PeakID (cmd=annotatePeaks.pl /analysisdata/dbtss_seq/data_integration/mm10/reftss.mm10.v2.new.ids.bed mm10 -size -100,100 -m ./homer/data/knownTFs/motifs/tata.motif -multi -CpG -noann)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type	CpG%	GC%	TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation)
mm_159857.1	chr5	138280372	138280572	+	1	NA	NA	NA	-37	NM_016964	50878	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	0.125000	0.631841	
mm_45638.1	chr5	76858474	76858674	-	1	NA	NA	NA	17975	NM_001163793	320827	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.040000	0.567164	
mm_37237.1	chr4	118091675	118091875	-	1	NA	NA	NA	43171	NM_001285520	20441	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.005000	0.497512	
mm_4068.1	chr1	166130349	166130549	+	1	NA	NA	NA	-11	NM_021610	59290	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197	glycoprotein A33 (transmembrane)	protein-coding	0.010000	0.626866	
mm_154549.1	chrM	14830	15030	-	1	NA	NA	NA	NA	NA									0.015000	0.398010	
mm_42590.1	chr5	117357215	117357415	+	1	NA	NA	NA	10	NM_021539	59043	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	0.160000	0.815920	
mm_25508.1	chr3	109573923	109574123	+	1	NA	NA	NA	16	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.025000	0.482587	
mm_130312.1	chr15	97055853	97056053	-	1	NA	NA	NA	3	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.030000	0.542289	
mm_34499.1	chr4	148602455	148602655	+	1	NA	NA	NA	11	NM_001003893	17175	Mm.378962	NM_010767	ENSMUSG00000028979	Masp2	MASP-2|MAp19	mannan-binding lectin serine peptidase 2	protein-coding	0.010000	0.582090	
mm_140290.1	chr17	85613132	85613332	+	1	NA	NA	NA	5164	NR_038084	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.035000	0.562189	
mm_73571.1	chr8	109705507	109705707	+	1	NA	NA	NA	61	NM_001167946	75871	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	0.165000	0.741294	
mm_123921.1	chr14	73364586	73364786	-	1	NA	NA	NA	20585	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.040000	0.502488	-93(CTGTTTTAAAAG,-,0.00),-92(TGTTTTAAAAGC,-,0.00),-91(GTTTTAAAAGCA,+,0.00)
mm_170516.1	chr19	29464659	29464859	-	1	NA	NA	NA	53840	NM_021396	58205	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.025000	0.522388	-38(CCCCTTATAAGC,-,0.00),-36(CCTTATAAGCAC,+,0.00)
mm_143736.1	chr17	81473448	81473648	-	1	NA	NA	NA	264839	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.015000	0.412935	
mm_120578.1	chr14	69244258	69244458	+	1	NA	NA	NA	40745	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.000000	0.298507	
mm_75109.1	chr8	34146942	34147142	-	1	NA	NA	NA	-303	NM_026609	68192	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	0.065000	0.597015	
mm_50099.1	chr6	41533023	41533223	+	1	NA	NA	NA	11347	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.015000	0.542289	
mm_96574.1	chr11	69058422	69058622	+	1	NA	NA	NA	-1253	NM_028005	71923	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.005000	0.472637	
mm_92870.1	chr10	82241181	82241381	-	1	NA	NA	NA	-6	NM_001105557	237411		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding	0.035000	0.567164	
mm_86635.1	chr10	14048169	14048369	+	1	NA	NA	NA	81890	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.015000	0.422886	
mm_121459.1	chr14	120494503	120494703	+	1	NA	NA	NA	16142	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.035000	0.557214	
mm_15987.1	chr2	166906368	166906568	+	1	NA	NA	NA	372	NM_023565	110750	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0.145000	0.711443	61(GGTTCTAAAAGA,-,0.00)
mm_58482.1	chr7	3617273	3617473	+	1	NA	NA	NA	0	NM_025348	66091	Mm.17851	NM_025348	ENSMUSG00000035674	Ndufa3	1010001M12Rik|1700022J01Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3	protein-coding	0.060000	0.597015	
mm_38994.1	chr4	151129344	151129544	-	1	NA	NA	NA	39874	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	0.055000	0.641791	
mm_159198.1	chr2	119618003	119618203	+	1	NA	NA	NA	-195	NM_133851	108907	Mm.290015	NM_133851	ENSMUSG00000027306	Nusap1	2610201A12Rik|AI481307|ANKT|AW547774|BB165529|BM037|LNP|NuSAP|Q0310|SAPL	nucleolar and spindle associated protein 1	protein-coding	0.050000	0.616915	
mm_55050.1	chr6	49042806	49043006	-	1	NA	NA	NA	6388	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.035000	0.582090	
mm_115329.1	chr13	112466771	112466971	+	1	NA	NA	NA	2801	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.015000	0.527363	
mm_98017.1	chr11	84880284	84880484	+	1	NA	NA	NA	-99	NM_001077636	70325	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	0.110000	0.756219	
mm_42170.1	chr5	112261577	112261777	+	1	NA	NA	NA	5857	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.020000	0.482587	
mm_133298.1	chr16	77501185	77501385	+	1	NA	NA	NA	-97651	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.010000	0.363184	
mm_86566.1	chr10	11286136	11286336	+	1	NA	NA	NA	4649	NM_001168297	71865	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0.015000	0.358209	
mm_2076.1	chr1	87646528	87646728	+	1	NA	NA	NA	26316	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.005000	0.467662	
mm_6909.1	chr1	84839185	84839385	-	1	NA	NA	NA	19	NM_133975	14897	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.135000	0.711443	
mm_139572.1	chr17	57062188	57062388	+	1	NA	NA	NA	11	NM_177638	224912	Mm.284447	NM_177638	ENSMUSG00000044279	Crb3	5730439B18|AU015179|AU041752	crumbs family member 3	protein-coding	0.070000	0.651741	
mm_5072.1	chr1	3377688	3377888	-	1	NA	NA	NA	293710	NM_001011874	497097	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.005000	0.368159	
mm_127681.1	chr15	102936725	102936925	+	1	NA	NA	NA	-28	NM_010463	15421	Mm.221179	NM_010463	ENSMUSG00000050328	Hoxc12	Hox-3.8	homeobox C12	protein-coding	0.050000	0.572139	
mm_145208.1	chr18	50026196	50026396	+	1	NA	NA	NA	-26986	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.005000	0.358209	
mm_135808.1	chr16	57353089	57353289	-	1	NA	NA	NA	-88	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.025000	0.522388	
mm_39511.1	chr5	21251615	21251815	+	1	NA	NA	NA	65448	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.005000	0.388060	
mm_164404.1	chr16	35281375	35281575	-	1	NA	NA	NA	82443	NM_133704	317717	Mm.259164	NM_133704	ENSMUSG00000034473	Sec22a	1810005C06Rik|Sec22l2	SEC22 homolog A, vesicle trafficking protein	protein-coding	0.025000	0.472637	
mm_169203.1	chr13	66401775	66401975	-	1	NA	NA	NA	39243	NM_183119	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.020000	0.517413	
mm_20216.1	chr2	125723615	125723815	-	1	NA	NA	NA	433	NM_199022	271849	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding	0.040000	0.552239	
mm_128439.1	chr15	50715118	50715318	-	1	NA	NA	NA	173831	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.343284	
mm_154215.1	chr19	59313856	59314056	-	1	NA	NA	NA	31824	NM_001033222	107368	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0.005000	0.432836	
mm_68474.1	chr7	110844314	110844514	-	1	NA	NA	NA	-33	NM_025999	67150	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	0.095000	0.681592	
mm_57680.1	chr6	128503433	128503633	-	1	NA	NA	NA	23187	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.015000	0.537313	
mm_94.1	chr1	7177575	7177775	+	1	NA	NA	NA	88755	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.050000	0.467662	
mm_104458.1	chr11	95065812	95066012	-	1	NA	NA	NA	3286	NM_001306071	16400	Mm.57035	NM_013565	ENSMUSG00000001507	Itga3	AA407068|CD49C|GAPB3	integrin alpha 3	protein-coding	0.055000	0.597015	
mm_33225.1	chr4	126753775	126753975	+	1	NA	NA	NA	105	NM_001035526	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.080000	0.706468	
mm_90359.1	chr10	127165403	127165603	+	1	NA	NA	NA	-328	NM_027739	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.130000	0.741294	
mm_81975.1	chr9	121298652	121298852	+	1	NA	NA	NA	-21580	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.025000	0.626866	
mm_80180.1	chr9	72279061	72279261	+	1	NA	NA	NA	4273	NM_001311105	235469	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	0.005000	0.393035	-4(TTTTAAATAGGC,+,0.00)
mm_157371.1	chrX	37878392	37878592	-	1	NA	NA	NA	452	NM_001004193	434768	Mm.336025	NM_001004193	ENSMUSG00000064137	Rhox8	Tox	reproductive homeobox 8	protein-coding	0.015000	0.492537	
mm_82033.1	chr9	121950967	121951167	+	1	NA	NA	NA	47	NM_001199927	245050	Mm.71062	NM_177743	ENSMUSG00000038233	Fam198a	C730027P07Rik	family with sequence similarity 198, member A	protein-coding	0.025000	0.611940	
mm_19146.1	chr2	80524595	80524795	-	1	NA	NA	NA	56487	NM_001290745	50884	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0.025000	0.482587	
mm_79664.1	chr9	59658375	59658575	+	1	NA	NA	NA	2107	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.010000	0.452736	
mm_57868.1	chr6	129623875	129624075	-	1	NA	NA	NA	-111	NM_001286018	27007	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	0.020000	0.447761	
mm_50944.1	chr6	58017382	58017582	+	1	NA	NA	NA	-8280	NM_134172	171190	Mm.377170	NM_134172	ENSMUSG00000048697	Vmn1r26	V1rc17	vomeronasal 1 receptor 26	protein-coding	0.035000	0.417910	
mm_153190.1	chr19	34509740	34509940	-	1	NA	NA	NA	17634	NM_001111100	16889	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.005000	0.532338	61(CCTTTTATAGGA,+,0.00)
mm_10233.1	chr2	6471940	6472140	+	1	NA	NA	NA	119304	NM_181399	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.005000	0.467662	-76(CCTTTTAAAAAG,+,0.00),-76(CCTTTTAAAAAG,-,0.00)
mm_12240.1	chr2	68861032	68861232	+	1	NA	NA	NA	-309	NM_172856	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.035000	0.582090	
mm_134263.1	chr16	13750763	13750963	-	1	NA	NA	NA	-20379	NM_011987	26565	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	0.065000	0.597015	36(TTCTATAAGAGC,-,0.00)
mm_128691.1	chr15	61989451	61989651	-	1	NA	NA	NA	4210	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.035000	0.601990	
mm_20117.1	chr2	121170985	121171185	-	1	NA	NA	NA	40	NM_001290819	99334	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	0.075000	0.666667	
mm_13521.1	chr2	110013068	110013268	+	1	NA	NA	NA	-4649	NM_026613	68201	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	0.005000	0.358209	
mm_88990.1	chr10	81565652	81565852	+	1	NA	NA	NA	6308	NM_001276288	14797	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.020000	0.621891	
mm_134924.1	chr16	30550439	30550639	-	1	NA	NA	NA	39	NM_172614	224090	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0.110000	0.736318	
mm_25248.1	chr3	103988262	103988462	+	1	NA	NA	NA	-20046	NR_030676	100125931	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	0.010000	0.447761	
mm_147456.1	chr18	46574379	46574579	-	1	NA	NA	NA	54	NM_173394	225471	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.045000	0.651741	
mm_81079.1	chr9	106223828	106224028	+	1	NA	NA	NA	1330	NM_031178	81897	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	0.030000	0.552239	
mm_80647.1	chr9	89869734	89869934	+	1	NA	NA	NA	-39941	NM_011245	19417	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	0.005000	0.517413	
mm_124287.1	chr14	103051386	103051586	-	1	NA	NA	NA	4474	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.030000	0.537313	
mm_145403.1	chr18	57405245	57405445	+	1	NA	NA	NA	50612	NM_028447	73137	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	0.025000	0.477612	
mm_98573.1	chr11	95569737	95569937	+	1	NA	NA	NA	17861	NM_033217	18053	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	0.005000	0.527363	
mm_101899.1	chr11	49186984	49187184	-	1	NA	NA	NA	5	NM_172793	237754	Mm.130787	NM_172793	ENSMUSG00000040283	Btnl9	B430208I01|Btn3|D330012D11Rik	butyrophilin-like 9	protein-coding	0.010000	0.492537	29(CCCCTTTAGAGG,-,0.00),30(CCCTTTAGAGGG,+,0.00)
mm_139061.1	chr17	46433735	46433935	+	1	NA	NA	NA	4642	NM_144856	108114	Mm.387538	NM_144856	ENSMUSG00000067144	Slc22a7	NLT|OAT2	solute carrier family 22 (organic anion transporter), member 7	protein-coding	0.055000	0.671642	
mm_47270.1	chr5	121859882	121860082	-	1	NA	NA	NA	10954	NM_175474	231717	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.010000	0.427861	77(GACTCTAAATGA,-,0.00)
mm_91643.1	chr10	42276654	42276854	-	1	NA	NA	NA	-12	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.100000	0.726368	
mm_113698.1	chr13	43125834	43126034	+	1	NA	NA	NA	3095	NM_001005748	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.015000	0.467662	
mm_86147.1	chr9	117252055	117252255	-	1	NA	NA	NA	328	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.035000	0.537313	-48(CCTTTACAAGCG,+,0.00)
mm_43507.1	chr5	136987513	136987713	+	1	NA	NA	NA	346	NM_027318	70103	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	0.090000	0.666667	
mm_153717.1	chr19	44403188	44403388	-	1	NA	NA	NA	4421	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.030000	0.542289	
mm_69229.1	chr7	127686733	127686933	-	1	NA	NA	NA	-21654	NR_030428	791073		NR_030428	ENSMUSG00000076454	Mir762	Mirn762|mir-762|mmu-mir-762	microRNA 762	ncRNA	0.000000	0.502488	-31(CACTTTAAGAGG,-,0.00),-30(ACTTTAAGAGGG,+,0.00)
mm_164869.1	chr18	56588239	56588439	+	1	NA	NA	NA	-9	NM_026099	67343	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	0.025000	0.487562	
mm_101833.1	chr11	47985064	47985264	-	1	NA	NA	NA	89419	NR_105801	102466638		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	0.015000	0.432836	
mm_138216.1	chr17	34307449	34307649	+	1	NA	NA	NA	1682	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.000000	0.407960	
mm_74625.1	chr8	13105397	13105597	-	1	NA	NA	NA	-154	NM_178708	234069	Mm.103427	NM_178708	ENSMUSG00000038542	Pcid2	A730042J05Rik	PCI domain containing 2	protein-coding	0.150000	0.716418	
mm_49161.1	chr6	13682529	13682729	+	1	NA	NA	NA	-4663	NM_175312	101148	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	0.000000	0.542289	
mm_19858.1	chr2	113829526	113829726	-	1	NA	NA	NA	-535	NM_009162	20394	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	0.005000	0.417910	9(ACTTTTAGGGCC,+,0.00)
mm_121659.1	chr14	12343640	12343840	-	1	NA	NA	NA	2125	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	0.060000	0.557214	
mm_135850.1	chr16	59557267	59557467	-	1	NA	NA	NA	-1615	NM_174848	224273	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	0.025000	0.477612	
mm_28207.1	chr3	88334347	88334547	-	1	NA	NA	NA	-14	NM_024246	71913	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	0.020000	0.567164	
mm_69498.1	chr7	134225101	134225301	-	1	NA	NA	NA	-104	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.110000	0.661692	
mm_147495.1	chr18	47368979	47369179	-	1	NA	NA	NA	-209	NM_001311097	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.060000	0.636816	
mm_61011.1	chr7	49364844	49365044	+	1	NA	NA	NA	118755	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.020000	0.487562	
mm_116395.1	chr13	41220085	41220285	-	1	NA	NA	NA	-23	NM_001311121	54326	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0.120000	0.751244	
mm_50686.1	chr6	51584397	51584597	+	1	NA	NA	NA	39974	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.010000	0.462687	
mm_96708.1	chr11	69655622	69655822	+	1	NA	NA	NA	685	NM_009235	20670	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0.070000	0.616915	
mm_79590.1	chr9	58276400	58276600	+	1	NA	NA	NA	23336	NM_026942	69106	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.020000	0.507463	
mm_33116.1	chr4	124742823	124743023	+	1	NA	NA	NA	-858	NR_030480	735263		NR_030480	ENSMUSG00000076119	Mir698	Mirn698|mir-698|mmu-mir-698	microRNA 698	ncRNA	0.045000	0.606965	
mm_115274.1	chr13	111686105	111686305	+	1	NA	NA	NA	27	NM_172593	218613	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0.185000	0.845771	-7(TGCCCTATAAGG,-,0.00),-5(CCCTATAAGGGG,+,0.00),-5(CCCTATAAGGGG,-,0.00)
mm_112458.1	chr13	5864756	5864956	+	1	NA	NA	NA	3367	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.015000	0.492537	
mm_79753.1	chr9	62373419	62373619	+	1	NA	NA	NA	32176	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.035000	0.532338	
mm_64193.1	chr7	141463959	141464159	+	1	NA	NA	NA	2965	NM_001025103	213573	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.005000	0.552239	
mm_108738.1	chr12	88360745	88360945	+	1	NA	NA	NA	63	NM_028105	72113	Mm.181387	NM_028105	ENSMUSG00000021044	Adck1	2610005A10Rik	aarF domain containing kinase 1	protein-coding	0.050000	0.631841	
mm_60040.1	chr7	31037773	31037973	+	1	NA	NA	NA	2444	NR_106017	102465635		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.010000	0.537313	
mm_151084.1	chr19	47622558	47622758	+	1	NA	NA	NA	42639	NM_001164639	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0.050000	0.601990	
mm_117366.1	chr13	70841673	70841873	-	1	NA	NA	NA	38	NM_172053	271127	Mm.115970	NM_172053	ENSMUSG00000049538	Adamts16	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	protein-coding	0.035000	0.616915	
mm_129658.1	chr15	81066930	81067130	-	1	NA	NA	NA	38017	NM_153049	223701	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.010000	0.482587	
mm_29242.1	chr3	107215989	107216189	-	1	NA	NA	NA	5643	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.432836	
mm_165711.1	chr3	98857815	98858015	-	1	NA	NA	NA	1879	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.005000	0.512438	
mm_31514.1	chr4	53826074	53826274	+	1	NA	NA	NA	129	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.105000	0.646766	
mm_158862.1	chrY	2053172	2053372	+	1	NA	NA	NA	117137	NM_009571	22768	Mm.411381	NM_009571	ENSMUSG00000000103	Zfy2	Zfy-2	zinc finger protein 2, Y-linked	protein-coding	0.000000	0.482587	-80(CTGCATAAAGGG,-,0.00)
mm_122307.1	chr14	35811909	35812109	-	1	NA	NA	NA	-31	NM_001033766	239036	Mm.239970	NM_001033766	ENSMUSG00000041068	4930596D02Rik	-	RIKEN cDNA 4930596D02 gene	protein-coding	0.010000	0.497512	
mm_166125.1	chr4	153697474	153697674	+	1	NA	NA	NA	-214744	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	0.005000	0.462687	
mm_118610.1	chr14	20929334	20929534	+	1	NA	NA	NA	1	NM_009502	22330	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0.140000	0.691542	
mm_117704.1	chr13	95049310	95049510	-	1	NA	NA	NA	73066	NM_172590	218460	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.010000	0.577114	
mm_40065.1	chr5	34187988	34188188	+	1	NA	NA	NA	-378	NM_010753	17122	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.090000	0.666667	
mm_119158.1	chr14	31640924	31641124	+	1	NA	NA	NA	-33	NM_025295	26363	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0.060000	0.587065	
mm_77752.1	chr8	128488377	128488577	-	1	NA	NA	NA	129236	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.025000	0.522388	
mm_35825.1	chr4	47302416	47302616	-	1	NA	NA	NA	-50706	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.010000	0.507463	72(ATCCTTAAATGG,-,0.00),74(CCTTAAATGGTC,+,0.00)
mm_116819.1	chr13	54565277	54565477	-	1	NA	NA	NA	5	NM_001252647	97820	Mm.24593	NM_133797	ENSMUSG00000025871	4833439L19Rik	4930558H15Rik|C81457|Kiaa1191|P33monox	RIKEN cDNA 4833439L19 gene	protein-coding	0.110000	0.641791	
mm_110375.1	chr12	40201007	40201207	-	1	NA	NA	NA	-1792	NM_001033437	380755	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	0.005000	0.328358	
mm_130682.1	chr15	100678743	100678943	-	1	NA	NA	NA	9077	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.030000	0.537313	
mm_151014.1	chr19	46761498	46761698	+	1	NA	NA	NA	-11	NM_033569	94219	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0.070000	0.666667	
mm_84356.1	chr9	64704490	64704690	-	1	NA	NA	NA	33166	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.020000	0.497512	
mm_41716.1	chr5	102069984	102070184	+	1	NA	NA	NA	-163	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.120000	0.761194	
mm_121662.1	chr14	12345552	12345752	-	1	NA	NA	NA	213	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	0.060000	0.527363	
mm_134974.1	chr16	32026991	32027191	-	1	NA	NA	NA	-23804	NM_177103	320213	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	0.005000	0.343284	78(TTTTTTATAAGG,-,0.00)
mm_168965.1	chr12	80945452	80945652	+	1	NA	NA	NA	53	NM_001347415	20384	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0.075000	0.592040	
mm_45820.1	chr5	87692640	87692840	-	1	NA	NA	NA	6685	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.273632	-60(GACTCTATATGC,-,0.00)
mm_23586.1	chr3	63976074	63976274	+	1	NA	NA	NA	31	NM_001033300	229363	Mm.331051	NM_001033300	ENSMUSG00000027823	Gmps	670032|AA591640|AI047208|Gm9479	guanine monophosphate synthetase	protein-coding	0.090000	0.676617	-81(GCCTCTAAGAGG,-,0.00),-80(CCTCTAAGAGGC,+,0.00)
mm_125358.1	chr15	39391842	39392042	+	1	NA	NA	NA	193656	NM_053271	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.020000	0.417910	
mm_118708.1	chr14	22178836	22179036	+	1	NA	NA	NA	159224	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.000000	0.363184	
mm_75749.1	chr8	69901035	69901235	-	1	NA	NA	NA	-1049	NM_032004	83984	Mm.432504	NM_032004	ENSMUSG00000047654	Tssk6	Sstk|TSK-6|TSSK-6	testis-specific serine kinase 6	protein-coding	0.025000	0.388060	
mm_71474.1	chr8	46535550	46535750	+	1	NA	NA	NA	-16419	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.000000	0.328358	
mm_8197.1	chr1	138121353	138121553	-	1	NA	NA	NA	53673	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.467662	
mm_126083.1	chr15	77822378	77822578	+	1	NA	NA	NA	19697	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.010000	0.542289	
mm_5285.1	chr1	20784169	20784369	-	1	NA	NA	NA	1	NM_145856	257630	Mm.222807	NM_145856	ENSMUSG00000041872	Il17f	C87042|IL-17F	interleukin 17F	protein-coding	0.010000	0.457711	
mm_93456.1	chr10	110152171	110152371	-	1	NA	NA	NA	-152052	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.000000	0.437811	3(TTCCCTATAAGG,-,0.00),5(CCCTATAAGGCA,+,0.00)
mm_118690.1	chr14	22123211	22123411	+	1	NA	NA	NA	103599	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.000000	0.432836	
mm_39836.1	chr5	30869509	30869709	+	1	NA	NA	NA	-38	NM_144525	68796	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	0.125000	0.721393	
mm_124429.1	chr14	118236866	118237066	-	1	NA	NA	NA	64	NM_177753	223227	Mm.70950	NM_177753	ENSMUSG00000061517	Sox21	Sox25	SRY (sex determining region Y)-box 21	protein-coding	0.090000	0.696517	
mm_132624.1	chr16	38901165	38901365	+	1	NA	NA	NA	-1080	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.010000	0.477612	
mm_80208.1	chr9	72438745	72438945	+	1	NA	NA	NA	316	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.020000	0.422886	
mm_17239.1	chr2	25607831	25608031	-	1	NA	NA	NA	515	NM_001024616	227624	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	0.080000	0.636816	
mm_44424.1	chr5	20881942	20882142	-	1	NA	NA	NA	82	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.180000	0.791045	
mm_144281.1	chr18	11839407	11839607	+	1	NA	NA	NA	-130	NR_045421	621998	Mm.353277	NR_045421		Gm6277	-	predicted gene 6277	ncRNA	0.145000	0.686567	
mm_96187.1	chr11	61684339	61684539	+	1	NA	NA	NA	29	NM_178618	69640	Mm.458559	NM_178618	ENSMUSG00000042377	Fam83g	2310040C09Rik|AI506990|wly	family with sequence similarity 83, member G	protein-coding	0.120000	0.726368	
mm_25692.1	chr3	122259395	122259595	+	1	NA	NA	NA	13938	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.005000	0.492537	
mm_33214.1	chr4	126609805	126610005	+	1	NA	NA	NA	51	NM_001145950	230757	Mm.296838	NM_001013755	ENSMUSG00000073755	5730409E04Rik	7530403E16Rik|AI849033	RIKEN cDNA 5730409E04Rik gene	protein-coding	0.115000	0.741294	
mm_64519.1	chr7	143836527	143836727	+	1	NA	NA	NA	13460	NM_007856	13360	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	0.020000	0.547264	
mm_99038.1	chr11	98960548	98960748	+	1	NA	NA	NA	177	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.090000	0.701493	
mm_31741.1	chr4	63215313	63215513	+	1	NA	NA	NA	1	NM_025685	373864	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0.095000	0.686567	
mm_101489.1	chr11	31407769	31407969	-	1	NA	NA	NA	-37808	NM_011491	20856	Mm.32506	NM_011491	ENSMUSG00000020303	Stc2	AW125853|Stc2l|mustc2	stanniocalcin 2	protein-coding	0.005000	0.437811	
mm_121698.1	chr14	14120834	14121034	-	1	NA	NA	NA	-30	NM_025550	66413	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0.065000	0.641791	
mm_28217.1	chr3	88410223	88410423	-	1	NA	NA	NA	74	NM_001310605	67037	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0.075000	0.646766	
mm_128536.1	chr15	54893047	54893247	-	1	NA	NA	NA	26999	NM_015744	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.010000	0.422886	
mm_106906.1	chr12	8015407	8015607	+	1	NA	NA	NA	37830	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.422886	
mm_48218.1	chr5	137611336	137611536	-	1	NA	NA	NA	-32	NM_008788	18542	Mm.262345	NM_008788	ENSMUSG00000029718	Pcolce	Astt-2|Astt2|P14|PCPE-1	procollagen C-endopeptidase enhancer protein	protein-coding	0.025000	0.641791	
mm_88630.1	chr10	79886792	79886992	+	1	NA	NA	NA	580	NM_015779	50701	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0.025000	0.557214	
mm_15675.1	chr2	163506741	163506941	+	1	NA	NA	NA	-16	NM_001312906	15378	Mm.202383	NM_008261	ENSMUSG00000017950	Hnf4a	HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14	hepatic nuclear factor 4, alpha	protein-coding	0.020000	0.582090	
mm_140981.1	chr17	24717957	24718157	-	1	NA	NA	NA	0	NM_026205	67504	Mm.46159	NM_026205	ENSMUSG00000008482	Rnf151	1700010O16Rik|AV047371	ring finger protein 151	protein-coding	0.015000	0.552239	
mm_48675.1	chr5	146184206	146184406	-	1	NA	NA	NA	998	NM_001008547	69282	Mm.373573	NM_001008547	ENSMUSG00000095040	1700001J03Rik	-	RIKEN cDNA 1700001J03 gene	protein-coding	0.005000	0.507463	
mm_44789.1	chr5	32195860	32196060	-	1	NA	NA	NA	-36748	NM_030072	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0.025000	0.527363	
mm_4636.1	chr1	179803376	179803576	+	1	NA	NA	NA	539	NM_026375	226747	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.160000	0.756219	
mm_92036.1	chr10	62494639	62494839	-	1	NA	NA	NA	-7934	NM_133672	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.010000	0.358209	47(GCTTTAATGCTG,+,0.00)
mm_168771.1	chr12	17233498	17233698	+	1	NA	NA	NA	-32997	NM_027959	71853	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	0.050000	0.398010	
mm_137190.1	chr17	23822055	23822255	+	1	NA	NA	NA	6954	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.010000	0.567164	
mm_15574.1	chr2	158666615	158666815	+	1	NA	NA	NA	-18	NM_153089	228852	Mm.150540	NM_153089	ENSMUSG00000037754	Ppp1r16b	ANKRD4|C130078N17Rik|TIMAP|Wdt4	protein phosphatase 1, regulatory (inhibitor) subunit 16B	protein-coding	0.025000	0.502488	-1(CTCTAGATAAGG,-,0.00)
mm_99892.1	chr11	109613320	109613520	+	1	NA	NA	NA	-2031	NM_145940	52639	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0.010000	0.452736	
mm_165496.1	chr2	166274398	166274598	+	1	NA	NA	NA	590	NR_033467	670775	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	OTTMUSG00000001131	predicted gene 11468	ncRNA	0.010000	0.517413	
mm_65192.1	chr7	19696592	19696792	-	1	NA	NA	NA	1706	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.105000	0.721393	
mm_148978.1	chr19	7579039	7579239	+	1	NA	NA	NA	21680	NM_139269	225845	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.035000	0.557214	
mm_12271.1	chr2	68979405	68979605	+	1	NA	NA	NA	118064	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.005000	0.417910	
mm_79371.1	chr9	54698772	54698972	+	1	NA	NA	NA	-687	NM_021422	58233	Mm.489676	NM_021422	ENSMUSG00000032285	Dnaja4	1110021L12Rik|AV358213|Dj4|Hsj4|mmDjA4	DnaJ heat shock protein family (Hsp40) member A4	protein-coding	0.015000	0.537313	
mm_104632.1	chr11	97439972	97440172	-	1	NA	NA	NA	-10088	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.065000	0.636816	
mm_31812.1	chr4	66827588	66827788	+	1	NA	NA	NA	137	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.025000	0.517413	
mm_1987.1	chr1	87124853	87125053	+	1	NA	NA	NA	-55	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.015000	0.597015	-33(CCCTATTTAAGT,-,0.00)
mm_103879.1	chr11	83529134	83529334	-	1	NA	NA	NA	1284	NM_013653	20304	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.035000	0.532338	
mm_169566.1	chr15	16915024	16915224	-	1	NA	NA	NA	137023	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.010000	0.507463	-33(CCCCTTATAAGC,-,0.00),-31(CCTTATAAGCAC,+,0.00)
mm_158744.1	chrX	164258723	164258923	-	1	NA	NA	NA	-630	NM_009759	12169	Mm.504	NM_009759	ENSMUSG00000031377	Bmx	Etk|Etk/Bmx|Tyro8	BMX non-receptor tyrosine kinase	protein-coding	0.020000	0.457711	
mm_24821.1	chr3	95650776	95650976	+	1	NA	NA	NA	-7845	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.010000	0.512438	
mm_14812.1	chr2	146101551	146101751	+	1	NA	NA	NA	-120346	NM_016889	53626	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	0.020000	0.512438	
mm_167871.1	chrX	36151970	36152170	+	1	NA	NA	NA	39962	NM_133990	16164	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	0.020000	0.462687	
mm_31181.1	chr4	43508775	43508975	+	1	NA	NA	NA	1849	NM_139305	230099	Mm.283682	NM_139305	ENSMUSG00000028463	Car9	CAIX|Ca9|MN/CA9	carbonic anhydrase 9	protein-coding	0.035000	0.601990	
mm_119177.1	chr14	32165691	32165891	+	1	NA	NA	NA	2	NM_019744	27057	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.090000	0.641791	
mm_35879.1	chr4	49538083	49538283	-	1	NA	NA	NA	11363	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.010000	0.497512	
mm_29677.1	chr3	122899403	122899603	-	1	NA	NA	NA	4431	NM_007980	14079	Mm.28398	NM_007980	ENSMUSG00000023057	Fabp2	Fabpi|I-FABP	fatty acid binding protein 2, intestinal	protein-coding	0.005000	0.298507	-30(TTTTTTAAAGGA,+,0.00),18(TTCTTTTAAAAG,-,0.00),20(CTTTTAAAAGAC,+,0.00)
mm_8156.1	chr1	136946102	136946302	-	1	NA	NA	NA	7428	NM_001159769	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	0.035000	0.567164	
mm_121464.1	chr14	120896765	120896965	+	1	NA	NA	NA	-14329	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	0.020000	0.512438	
mm_16252.1	chr2	173158931	173159131	+	1	NA	NA	NA	5958	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.005000	0.417910	
mm_71803.1	chr8	68317614	68317814	+	1	NA	NA	NA	41186	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.000000	0.417910	
mm_48167.1	chr5	137152975	137153175	-	1	NA	NA	NA	-36868	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.010000	0.507463	
mm_162970.1	chr11	11685807	11686007	+	1	NA	NA	NA	-18	NM_009578	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.140000	0.746269	
mm_1172.1	chr1	60921134	60921334	+	1	NA	NA	NA	12209	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.095000	0.557214	
mm_108507.1	chr12	83987605	83987805	+	1	NA	NA	NA	-156	NM_134188	171210	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	0.030000	0.492537	-77(GGCTTTTAAGAG,-,0.00),-76(GCTTTTAAGAGC,+,0.00),-75(CTTTTAAGAGCG,+,0.00)
mm_73326.1	chr8	105276360	105276560	+	1	NA	NA	NA	13	NM_030152	78688	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0.075000	0.666667	
mm_51646.1	chr6	86028629	86028829	+	1	NA	NA	NA	48	NM_001271860	11519	Mm.104155	NM_013458	ENSMUSG00000030000	Add2	2900072M03Rik|add97	adducin 2 (beta)	protein-coding	0.095000	0.701493	
mm_816.1	chr1	46066771	46066971	+	1	NA	NA	NA	133	NM_001160386	227058	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	0.060000	0.542289	
mm_166190.1	chr5	33996687	33996887	+	1	NA	NA	NA	803	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.175000	0.805970	
mm_165371.1	chr2	128159167	128159367	+	1	NA	NA	NA	31692	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.045000	0.597015	
mm_46783.1	chr5	112577095	112577295	-	1	NA	NA	NA	3	NM_001253917	56747	Mm.143742	NM_019982	ENSMUSG00000058153	Sez6l	AI843918|AIG1|AW539724|Acig1|BSRP-B|mKIAA0927	seizure related 6 homolog like	protein-coding	0.125000	0.736318	
mm_78100.1	chr9	19622010	19622210	+	1	NA	NA	NA	19	NM_172918	244713	Mm.67366	NM_172918	ENSMUSG00000057551	Zfp317	4932416G03|D230022C05Rik|KRAB9|Zfp67|Zfp75|mszf40	zinc finger protein 317	protein-coding	0.065000	0.497512	-60(CGTTATAAAAGG,-,0.00)
mm_38193.1	chr4	135353527	135353727	-	1	NA	NA	NA	-413	NM_001130477	51796	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.065000	0.572139	
mm_25983.1	chr3	133320846	133321046	+	1	NA	NA	NA	10836	NM_146141	74776	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0.045000	0.472637	
mm_1820.1	chr1	82534286	82534486	+	1	NA	NA	NA	52463	NM_007735	12829	Mm.40253	NM_007735	ENSMUSG00000067158	Col4a4	E130010M05Rik|[a]4(IV)	collagen, type IV, alpha 4	protein-coding	0.005000	0.492537	
mm_93344.1	chr10	100444890	100445090	-	1	NA	NA	NA	42357	NM_001033332	237500	Mm.296805	NM_001033332	ENSMUSG00000036676	Tmtc3	9130014E20Rik|B130008E12Rik|mSmile	transmembrane and tetratricopeptide repeat containing 3	protein-coding	0.005000	0.278607	
mm_144205.1	chr18	9494572	9494772	+	1	NA	NA	NA	-44522	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.005000	0.442786	
mm_98185.1	chr11	87793339	87793539	+	1	NA	NA	NA	-345	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.010000	0.507463	
mm_169826.1	chr16	24393357	24393557	+	1	NA	NA	NA	107	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.060000	0.641791	
mm_84634.1	chr9	70952050	70952250	-	1	NA	NA	NA	71	NM_001324473	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.010000	0.507463	-33(CTCCCTAAATGC,-,0.00)
mm_73824.1	chr8	117459252	117459452	+	1	NA	NA	NA	87	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.020000	0.472637	
mm_133227.1	chr16	76500157	76500357	+	1	NA	NA	NA	-127208	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.015000	0.442786	
mm_129243.1	chr15	76656820	76657020	-	1	NA	NA	NA	-19	NM_001276321	54151	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0.130000	0.766169	
mm_97138.1	chr11	75193773	75193973	+	1	NA	NA	NA	-120	NM_177708	237847	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0.120000	0.731343	
mm_152422.1	chr19	10674977	10675177	-	1	NA	NA	NA	2994	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.020000	0.567164	
mm_170053.1	chr17	29319070	29319270	+	1	NA	NA	NA	288	NM_023734	74116	Mm.30950	NM_023734	ENSMUSG00000024011	Pi16	1200009H11Rik|Cripi|PI-16	peptidase inhibitor 16	protein-coding	0.025000	0.651741	
mm_116988.1	chr13	56472323	56472523	-	1	NA	NA	NA	9823	NM_008373	16198	Mm.3006	NM_008373	ENSMUSG00000021538	Il9	Il-9|P40	interleukin 9	protein-coding	0.000000	0.616915	
mm_106936.1	chr12	8674264	8674464	+	1	NA	NA	NA	105	NM_001160220	80913	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.095000	0.696517	
mm_90933.1	chr10	12869083	12869283	-	1	NA	NA	NA	-7448	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.105000	0.746269	
mm_169835.1	chr16	25644720	25644920	-	1	NA	NA	NA	-38945	NM_001127259	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.020000	0.472637	-28(CTTTAAATACCC,+,0.00)
mm_77293.1	chr8	116944279	116944479	-	1	NA	NA	NA	986	NM_177700	234776	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	0.015000	0.512438	
mm_34482.1	chr4	148473017	148473217	+	1	NA	NA	NA	24535	NM_020009	56717	Mm.21158	NM_020009	ENSMUSG00000028991	Mtor	2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat	mechanistic target of rapamycin (serine/threonine kinase)	protein-coding	0.020000	0.482587	
mm_150529.1	chr19	39286996	39287196	+	1	NA	NA	NA	11	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.015000	0.422886	
mm_3253.1	chr1	136146450	136146650	+	1	NA	NA	NA	15149	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.010000	0.477612	
mm_108105.1	chr12	75308213	75308413	+	1	NA	NA	NA	0	NM_023275	80837	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	0.040000	0.577114	79(CCGTTTAAAAGC,-,0.00)
mm_43829.1	chr5	142972024	142972224	+	1	NA	NA	NA	11769	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.045000	0.616915	
mm_100289.1	chr11	117813569	117813769	+	1	NA	NA	NA	4002	NM_009304	20973	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0.020000	0.537313	
mm_23085.1	chr3	36863056	36863256	+	1	NA	NA	NA	50	NM_172679	229227	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0.100000	0.686567	
mm_62679.1	chr7	109703616	109703816	+	1	NA	NA	NA	-21	NM_020616	57373	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	0.120000	0.716418	
mm_6692.1	chr1	80715386	80715586	-	1	NA	NA	NA	43067	NM_175291	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.000000	0.412935	
mm_17230.1	chr2	25574762	25574962	-	1	NA	NA	NA	9	NM_029293	75454	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	0.070000	0.597015	
mm_61515.1	chr7	78913315	78913515	+	1	NA	NA	NA	-9	NM_001291221	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.000000	0.512438	
mm_88657.1	chr10	79996392	79996592	+	1	NA	NA	NA	-1116	NM_001347081	27403	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.080000	0.631841	22(CCACTTAAAGGG,+,0.00)
mm_161830.1	chr17	80347255	80347455	+	1	NA	NA	NA	26187	NR_028385	791338	Mm.204722	NR_028385		Gm10190	ENSMUSG00000066938	predicted gene 10190	ncRNA	0.015000	0.442786	
mm_80362.1	chr9	75231967	75232167	+	1	NA	NA	NA	53	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.065000	0.681592	
mm_59076.1	chr7	19517805	19518005	+	1	NA	NA	NA	-826	NM_027116	69547	Mm.77325	NM_027116	ENSMUSG00000060621	Nkpd1	2310015G09Rik	NTPase, KAP family P-loop domain containing 1	protein-coding	0.080000	0.726368	
mm_104839.1	chr11	99200003	99200203	-	1	NA	NA	NA	30914	NM_020618	57376	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	0.035000	0.497512	
mm_21983.1	chr2	167492759	167492959	-	1	NA	NA	NA	15	NM_170756	263876	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	0.115000	0.701493	
mm_132918.1	chr16	49757267	49757467	+	1	NA	NA	NA	58073	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.015000	0.412935	
mm_51434.1	chr6	78911068	78911268	+	1	NA	NA	NA	-120874	NR_040302	100504701	Mm.400420	NR_040301	ENSMUSG00000108072	Gm20362	-	predicted gene, 20362	ncRNA	0.000000	0.378109	
mm_42915.1	chr5	122682801	122683001	+	1	NA	NA	NA	-24643	NM_001310720	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.005000	0.502488	
mm_162686.1	chr10	17919930	17920130	-	1	NA	NA	NA	28037	NM_001033432	380629	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.020000	0.407960	
mm_83677.1	chr9	50344883	50345083	-	1	NA	NA	NA	-111801	NR_131161	71873		NR_131161	ENSMUSG00000110916	2310003N18Rik	-	RIKEN cDNA 2310003N18 gene	ncRNA	0.050000	0.472637	
mm_66345.1	chr7	43489892	43490092	-	1	NA	NA	NA	31	NM_001164518	210094	Mm.228087	NM_001164518	ENSMUSG00000013367	Iglon5	A230106M20Rik|Gm1431	IgLON family member 5	protein-coding	0.130000	0.830846	
mm_115340.1	chr13	112504003	112504203	+	1	NA	NA	NA	40033	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.035000	0.547264	
mm_33651.1	chr4	133055002	133055202	+	1	NA	NA	NA	43596	NM_146155	230793	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.020000	0.616915	
mm_52362.1	chr6	112696242	112696442	+	1	NA	NA	NA	328	NM_021385	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.090000	0.572139	
mm_88605.1	chr10	79807201	79807401	+	1	NA	NA	NA	-13720	NM_030218	78906	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.015000	0.587065	
mm_95485.1	chr11	51384084	51384284	+	1	NA	NA	NA	94264	NM_153393	237759	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	0.005000	0.532338	
mm_125630.1	chr15	61989462	61989662	+	1	NA	NA	NA	4221	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.035000	0.601990	
mm_84294.1	chr9	63322702	63322902	-	1	NA	NA	NA	55050	NM_011840	23938	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	0.000000	0.378109	
mm_41654.1	chr5	98483947	98484147	+	1	NA	NA	NA	-8383	NR_030484	735265		NR_030484	ENSMUSG00000105814	Mir703	Mirn703|mir-703|mmu-mir-703	microRNA 703	ncRNA	0.010000	0.233831	
mm_129603.1	chr15	79892259	79892459	-	1	NA	NA	NA	-49	NM_001160415	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.035000	0.597015	
mm_64340.1	chr7	142376945	142377145	+	1	NA	NA	NA	-3299	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.010000	0.577114	
mm_104448.1	chr11	95032891	95033091	-	1	NA	NA	NA	8380	NM_133667	18604	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	0.015000	0.552239	-33(CCTTTTAAACCG,+,0.00)
mm_56712.1	chr6	115252181	115252381	-	1	NA	NA	NA	-432	NM_080639	110595	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	TIMP-4	tissue inhibitor of metalloproteinase 4	protein-coding	0.005000	0.497512	
mm_35117.1	chr4	10989018	10989218	-	1	NA	NA	NA	18501	NM_175175	71801	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.000000	0.338308	
mm_64020.1	chr7	140272402	140272602	+	1	NA	NA	NA	25121	NM_001128145	244234	Mm.85125	NM_175533	ENSMUSG00000054672	5830411N06Rik	Scart2	RIKEN cDNA 5830411N06 gene	protein-coding	0.010000	0.517413	
mm_91995.1	chr10	62110967	62111167	-	1	NA	NA	NA	-54	NM_027251	69894	Mm.294126	NM_027251	ENSMUSG00000020083	2010107G23Rik	AA545165	RIKEN cDNA 2010107G23 gene	protein-coding	0.085000	0.701493	
mm_162520.1	chr1	157071927	157072127	+	1	NA	NA	NA	36623	NM_001305059	73435	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	0.015000	0.442786	
mm_39711.1	chr5	27791638	27791838	+	1	NA	NA	NA	-188	NM_018878	55982	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	0.090000	0.681592	
mm_22322.1	chr2	180642211	180642411	-	1	NA	NA	NA	380	NM_178254	277353	Mm.473700	NM_178254	ENSMUSG00000038932	Tcfl5	AV260129|Figlb|Sosf1	transcription factor-like 5 (basic helix-loop-helix)	protein-coding	0.170000	0.781095	
mm_29252.1	chr3	107219125	107219325	-	1	NA	NA	NA	2507	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.537313	
mm_152376.1	chr19	10228682	10228882	-	1	NA	NA	NA	11966	NM_001033481	225908	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.050000	0.701493	
mm_13366.1	chr2	103456792	103456992	+	1	NA	NA	NA	28261	NM_009804	12359	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0.030000	0.492537	
mm_84772.1	chr9	75642218	75642418	-	1	NA	NA	NA	16586	NM_027309	70082	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	0.010000	0.447761	
mm_9806.1	chr1	181927660	181927860	-	1	NA	NA	NA	-85359	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.010000	0.402985	-11(CCCTTTATAGCA,+,0.00)
mm_28672.1	chr3	95293599	95293799	-	1	NA	NA	NA	10764	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.040000	0.557214	
mm_23033.1	chr3	34650977	34651177	+	1	NA	NA	NA	1082	NM_011443	20674	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0.080000	0.646766	
mm_129561.1	chr15	79546172	79546372	-	1	NA	NA	NA	287	NM_199079	67040	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.120000	0.711443	
mm_69092.1	chr7	127018398	127018598	-	1	NA	NA	NA	-1146	NM_030240	67278	Mm.345385	NM_030240	ENSMUSG00000030680	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0.005000	0.557214	
mm_58645.1	chr7	6252693	6252893	+	1	NA	NA	NA	83	NM_001177416	627821	Mm.99441	NM_001177416	ENSMUSG00000053367	Gm6792	EG627821	predicted gene 6792	protein-coding	0.020000	0.572139	
mm_58250.1	chr6	145048715	145048915	-	1	NA	NA	NA	-3	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.070000	0.631841	
mm_80869.1	chr9	98563621	98563821	+	1	NA	NA	NA	-10	NM_015827	50797	Mm.400464	NM_015827	ENSMUSG00000032458	Copb2	AI256832	coatomer protein complex, subunit beta 2 (beta prime)	protein-coding	0.100000	0.671642	
mm_117468.1	chr13	76018626	76018826	-	1	NA	NA	NA	-14	NM_001131069	218341	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	0.075000	0.641791	
mm_87726.1	chr10	60106348	60106548	+	1	NA	NA	NA	191	NM_052994	94214	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.080000	0.681592	
mm_66545.1	chr7	45204386	45204586	-	1	NA	NA	NA	406	NM_201374	384619	Mm.214931	NM_201374	ENSMUSG00000038292	Ccdc155	Gm1434|KASH5	coiled-coil domain containing 155	protein-coding	0.080000	0.606965	
mm_38747.1	chr4	145272723	145272923	-	1	NA	NA	NA	-25953	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.000000	0.537313	-44(GGCCTTAAGAGG,-,0.00)
mm_29015.1	chr3	101836096	101836296	-	1	NA	NA	NA	27	NM_172295	242125	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0.030000	0.542289	
mm_24990.1	chr3	97158694	97158894	+	1	NA	NA	NA	17	NM_019800	66659	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	0.055000	0.532338	
mm_75616.1	chr8	63828151	63828351	-	1	NA	NA	NA	123919	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding	0.000000	0.383085	
mm_21902.1	chr2	166158103	166158303	-	1	NA	NA	NA	-2520	NM_028072	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.025000	0.467662	-61(TCTTTTATAACC,+,0.00)
mm_133658.1	chr16	91820444	91820644	+	1	NA	NA	NA	91173	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.035000	0.572139	
mm_19623.1	chr2	102812739	102812939	-	1	NA	NA	NA	88826	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.005000	0.477612	4(CCTCAAAAAGCC,+,0.00)
mm_45037.1	chr5	39643745	39643945	-	1	NA	NA	NA	786	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.050000	0.452736	
mm_47739.1	chr5	130250791	130250991	-	1	NA	NA	NA	4639	NM_023248	66711	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	Shwachman-Bodian-Diamond syndrome homolog (human)	protein-coding	0.030000	0.487562	
mm_78944.1	chr9	45138433	45138633	+	1	NA	NA	NA	-509	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.070000	0.616915	
mm_148203.1	chr18	79109899	79110099	-	1	NA	NA	NA	-608	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.140000	0.766169	
mm_157233.1	chrX	16911372	16911572	-	1	NA	NA	NA	302	NM_010883	17986	Mm.5014	NM_010883	ENSMUSG00000040138	Ndp	ND|Ndph	Norrie disease (pseudoglioma) (human)	protein-coding	0.010000	0.472637	-34(AAATATAAAAGG,-,0.00)
mm_92785.1	chr10	81291155	81291355	-	1	NA	NA	NA	12	NM_013769	27375	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.055000	0.621891	
mm_112437.1	chr13	5785968	5786168	+	1	NA	NA	NA	72024	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.005000	0.393035	-35(GACCTTTAAAAG,-,0.00),-34(ACCTTTAAAAGA,-,0.00),-33(CCTTTAAAAGAG,+,0.00)
mm_66542.1	chr7	45189549	45189749	-	1	NA	NA	NA	8654	NM_053256	114640	Mm.207078	NM_053256	ENSMUSG00000038300	Pth2	Tifp39|Tip39	parathyroid hormone 2	protein-coding	0.030000	0.621891	
mm_108528.1	chr12	84132447	84132647	+	1	NA	NA	NA	15942	NM_027438	70481	Mm.444348	NM_027438	ENSMUSG00000054383	Pnma1	5730402C15Rik	paraneoplastic antigen MA1	protein-coding	0.010000	0.482587	-11(TCCTTTTTAAAG,-,0.00),-9(CTTTTTAAAGTC,+,0.00)
mm_6416.1	chr1	73354284	73354484	-	1	NA	NA	NA	-44584	NR_040605	78718	Mm.244075	NR_040605	ENSMUSG00000101812	D530049I02Rik	-	RIKEN cDNA D530049I02 gene	ncRNA	0.000000	0.447761	
mm_59197.1	chr7	24506919	24507119	+	1	NA	NA	NA	-68	NM_001290461	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.060000	0.567164	80(CTATTTATAAGG,-,0.00)
mm_159981.1	chr6	113600608	113600808	-	1	NA	NA	NA	7	NM_027633	70979	Mm.72959	NM_027633	ENSMUSG00000033963	Fancd2os	4931417G12Rik	Fancd2 opposite strand	protein-coding	0.055000	0.621891	
mm_166149.1	chr5	5644695	5644895	+	1	NA	NA	NA	19437	NM_172447	207686	Mm.319007	NM_172447	ENSMUSG00000040473	Cfap69	4921525K03|A330021E22Rik|AI427898	cilia and flagella associated protein 69	protein-coding	0.005000	0.388060	
mm_86571.1	chr10	11609163	11609363	+	1	NA	NA	NA	39	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.075000	0.547264	
mm_42419.1	chr5	115312910	115313110	+	1	NA	NA	NA	11890	NR_131932	102639268	Mm.319998	NR_131932		Gm13830	OTTMUSG00000014646	predicted gene 13830	ncRNA	0.015000	0.502488	-87(ACATTTAAAGCC,+,0.00)
mm_85021.1	chr9	88436512	88436712	-	1	NA	NA	NA	2339	NM_172926	244962	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0.010000	0.358209	
mm_55733.1	chr6	77349535	77349735	-	1	NA	NA	NA	32840	NR_045141	70753	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	0.005000	0.407960	
mm_8835.1	chr1	162571440	162571640	-	1	NA	NA	NA	712	NM_001347125	53330	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e	vesicle-associated membrane protein 4	protein-coding	0.070000	0.457711	
mm_158574.1	chrX	150589776	150589976	-	1	NA	NA	NA	-45	NM_008824	18639	Mm.249131	NM_008824	ENSMUSG00000025271	Pfkfb1	PFK/FBPase 1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	protein-coding	0.010000	0.472637	
mm_133561.1	chr16	91393704	91393904	+	1	NA	NA	NA	-12431	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.020000	0.407960	
mm_169239.1	chr13	72455259	72455459	-	1	NA	NA	NA	173205	NR_030701	328287	Mm.235072	NR_030701		Gm20554	D430050G20	predicted gene, 20554	ncRNA	0.030000	0.517413	
mm_8443.1	chr1	152837410	152837610	-	1	NA	NA	NA	37357	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.000000	0.333333	
mm_82401.1	chr9	14770870	14771070	-	1	NA	NA	NA	60	NM_029306	69325	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	0.080000	0.706468	
mm_83293.1	chr9	43200159	43200359	-	1	NA	NA	NA	5496	NM_011139	18988	Mm.436650	NM_011139	ENSMUSG00000032015	Pou2f3	Epoc-1|Oct-11a|Oct11|Otf-11|Otf11|Skin|Skin-1a|Skn-1a|Skn-li	POU domain, class 2, transcription factor 3	protein-coding	0.020000	0.512438	
mm_48247.1	chr5	137786560	137786760	-	1	NA	NA	NA	41	NM_144913	231803	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0.070000	0.646766	
mm_133740.1	chr16	93973680	93973880	+	1	NA	NA	NA	35057	NM_019500	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.015000	0.512438	
mm_161617.1	chr16	55838774	55838974	-	1	NA	NA	NA	-233	NM_001159395	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.095000	0.656716	
mm_58165.1	chr6	142571228	142571428	-	1	NA	NA	NA	286	NM_001330363	16523	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding	0.055000	0.651741	
mm_35673.1	chr4	43578767	43578967	-	1	NA	NA	NA	-3	NM_172692	230101	Mm.229444	NM_172692	ENSMUSG00000028467	Gba2	F630034E04	glucosidase beta 2	protein-coding	0.100000	0.701493	
mm_37446.1	chr4	123350891	123351091	-	1	NA	NA	NA	-7739	NM_007558	12163	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0.055000	0.611940	
mm_101391.1	chr11	24925953	24926153	-	1	NA	NA	NA	-195331	NR_033491	100038617	Mm.387376	NR_033491	ENSMUSG00000073103	Gm10466	ENSMUSG00000073103	predicted gene 10466	ncRNA	0.000000	0.482587	
mm_69012.1	chr7	126704608	126704808	-	1	NA	NA	NA	108	NM_009898	12721	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.060000	0.671642	
mm_4382.1	chr1	172198128	172198328	+	1	NA	NA	NA	8576	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.000000	0.482587	
mm_18861.1	chr2	75704402	75704602	-	1	NA	NA	NA	161	NR_132727	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.075000	0.671642	
mm_137055.1	chr17	17928260	17928460	+	1	NA	NA	NA	40536	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.005000	0.383085	-14(TTCCATAAAAGA,-,0.00)
mm_112625.1	chr13	15848230	15848430	+	1	NA	NA	NA	41087	NR_046131	328190	Mm.446957	NR_046131		A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0.015000	0.452736	
mm_69006.1	chr7	126702378	126702578	-	1	NA	NA	NA	1742	NM_001301374	12721	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.010000	0.537313	
mm_135369.1	chr16	44061400	44061600	-	1	NA	NA	NA	-33555	NM_001172107	207798	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.035000	0.542289	
mm_163408.1	chr12	76795451	76795651	-	1	NA	NA	NA	3	NM_030677	14776	Mm.441856	NM_030677	ENSMUSG00000042808	Gpx2	GI-GPx|GPx-GI|GSHPx-2|GSHPx-GI	glutathione peroxidase 2	protein-coding	0.015000	0.507463	
mm_70412.1	chr8	11448061	11448261	+	1	NA	NA	NA	-29768	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.065000	0.597015	
mm_155857.1	chrX	101320077	101320277	+	1	NA	NA	NA	20998	NM_172932	245537	Mm.121508	NM_172932	ENSMUSG00000031302	Nlgn3	A230085M13Rik|HNL3|NL3	neuroligin 3	protein-coding	0.030000	0.562189	
mm_6015.1	chr1	59014011	59014211	-	1	NA	NA	NA	40540	NM_172656	227154	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	0.005000	0.323383	
mm_26859.1	chr3	14871675	14871875	-	1	NA	NA	NA	8237	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.015000	0.477612	
mm_11472.1	chr2	32374304	32374504	+	1	NA	NA	NA	7511	NM_198001	73737	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0.020000	0.582090	
mm_140817.1	chr17	23193059	23193259	-	1	NA	NA	NA	69	NM_009555	22700	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	0.065000	0.606965	
mm_91231.1	chr10	22302343	22302543	-	1	NA	NA	NA	-4277	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.015000	0.492537	
mm_141783.1	chr17	34301054	34301254	-	1	NA	NA	NA	-4713	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.015000	0.437811	48(TTTTTTAAAGCT,+,0.00)
mm_74058.1	chr8	122342355	122342555	+	1	NA	NA	NA	18291	NM_133202	170732	Mm.154808	NM_133202	ENSMUSG00000039079	Trhr2	TRH-R2	thyrotropin releasing hormone receptor 2	protein-coding	0.010000	0.402985	
mm_58305.1	chr6	146212705	146212905	-	1	NA	NA	NA	278658	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.010000	0.427861	
mm_116213.1	chr13	32783866	32784066	-	1	NA	NA	NA	-2187	NM_001166030	238564	Mm.60041	NM_001166030	ENSMUSG00000044951	Mylk4	EG238564	myosin light chain kinase family, member 4	protein-coding	0.010000	0.487562	
mm_129601.1	chr15	79834240	79834440	-	1	NA	NA	NA	-7	NM_001013362	504193	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	0.160000	0.786070	
mm_166414.1	chr5	137151392	137151592	-	1	NA	NA	NA	-35285	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.492537	
mm_137440.1	chr17	26508662	26508862	+	1	NA	NA	NA	-290	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.100000	0.736318	
mm_31231.1	chr4	44337724	44337924	+	1	NA	NA	NA	36907	NM_010790	17279	Mm.268668	NM_010790	ENSMUSG00000035683	Melk	AI327312|MPK38|mKIAA0175	maternal embryonic leucine zipper kinase	protein-coding	0.015000	0.303483	80(GACTTTAAAAAA,-,0.00)
mm_155633.1	chrX	84772705	84772905	+	1	NA	NA	NA	-275490	NM_001314038	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.010000	0.407960	-19(GCATTTTAAAGC,-,0.00)
mm_143715.1	chr17	80800925	80801125	-	1	NA	NA	NA	-73000	NM_001290345	225028	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.040000	0.522388	
mm_44863.1	chr5	34336048	34336248	-	1	NA	NA	NA	-102	NM_011278	19822	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0.100000	0.597015	
mm_147446.1	chr18	46525925	46526125	-	1	NA	NA	NA	-54	NM_173423	240263	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.115000	0.741294	
mm_162268.1	chr1	10038118	10038318	+	1	NA	NA	NA	0	NM_026493	211660	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	0.060000	0.512438	
mm_116522.1	chr13	45789108	45789308	-	1	NA	NA	NA	175783	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.005000	0.378109	
mm_82675.1	chr9	22131738	22131938	-	1	NA	NA	NA	27	NM_001102404	11433	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.080000	0.681592	
mm_115076.1	chr13	101773401	101773601	+	1	NA	NA	NA	-5284	NM_001077495	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.000000	0.373134	
mm_66923.1	chr7	61311548	61311748	-	1	NA	NA	NA	303679	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.015000	0.388060	
mm_108525.1	chr12	84114205	84114405	+	1	NA	NA	NA	-23	NM_028821	105000	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	0.075000	0.701493	
mm_90166.1	chr10	119413365	119413565	+	1	NA	NA	NA	21	NR_040578	67081	Mm.72644	NR_040578	ENSMUSG00000100558	1700025F24Rik	-	RIKEN cDNA 1700025F24 gene	ncRNA	0.035000	0.547264	
mm_141547.1	chr17	32034435	32034635	-	1	NA	NA	NA	-27	NM_028902	74377	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	0.095000	0.592040	
mm_50764.1	chr6	53592879	53593079	+	1	NA	NA	NA	19605	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.000000	0.373134	
mm_145991.1	chr18	68318911	68319111	+	1	NA	NA	NA	-18592	NM_013596	17203	Mm.8003	NM_013596	ENSMUSG00000007480	Mc5r	-	melanocortin 5 receptor	protein-coding	0.025000	0.487562	
mm_137042.1	chr17	17903943	17904143	+	1	NA	NA	NA	16219	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.000000	0.398010	
mm_108611.1	chr12	85476521	85476721	+	1	NA	NA	NA	2720	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.030000	0.497512	
mm_61699.1	chr7	81141813	81142013	+	1	NA	NA	NA	27114	NM_001004184	434203	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	0.005000	0.492537	-90(CTCTTTTAAAAC,-,0.00),-88(CTTTTAAAACTG,+,0.00)
mm_116072.1	chr13	27642392	27642592	-	1	NA	NA	NA	1	NM_001164058	19113	Mm.196424	NM_008930	ENSMUSG00000006488	Prl7a1	AA407021|AA409971|AA410116|PLP-E|PLP-G|Prlpe|Prlpg	prolactin family 7, subfamily a, member 1	protein-coding	0.015000	0.442786	-33(GACTATATAGGA,-,0.00)
mm_172136.1	chr6	35395478	35395678	+	1	NA	NA	NA	64732	NR_040526	73409	Mm.69443	NR_040526	ENSMUSG00000107341	1700065J11Rik	-	RIKEN cDNA 1700065J11 gene	ncRNA	0.070000	0.641791	
mm_164820.1	chr18	35438159	35438359	+	1	NA	NA	NA	60666	NM_030749	81500	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	0.005000	0.517413	
mm_59430.1	chr7	27129693	27129893	+	1	NA	NA	NA	9838	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.040000	0.547264	
mm_111293.1	chr12	85472096	85472296	-	1	NA	NA	NA	-1705	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.090000	0.706468	
mm_17223.1	chr2	25501621	25501821	-	1	NA	NA	NA	-2	NM_001271777	69379	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	0.015000	0.547264	
mm_143943.1	chr17	86444784	86444984	-	1	NA	NA	NA	-157706	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.020000	0.502488	
mm_35400.1	chr4	34687227	34687427	-	1	NA	NA	NA	111	NM_011895	24060	Mm.281885	NM_011895	ENSMUSG00000028293	Slc35a1	AA408150|AI314851	solute carrier family 35 (CMP-sialic acid transporter), member 1	protein-coding	0.135000	0.716418	
mm_142767.1	chr17	49528959	49529159	-	1	NA	NA	NA	35278	NM_001008231	76441	Mm.211275	NM_001008231	ENSMUSG00000040260	Daam2	2310016D11Rik|AI843643|AW557870	dishevelled associated activator of morphogenesis 2	protein-coding	0.015000	0.527363	
mm_37847.1	chr4	132186492	132186692	-	1	NA	NA	NA	25664	NM_145393	213541	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0.010000	0.293532	
mm_28309.1	chr3	89239361	89239561	-	1	NA	NA	NA	5552	NR_121683	360213	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.025000	0.557214	
mm_117992.1	chr13	100437401	100437601	-	1	NA	NA	NA	15363	NM_008670	17940	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.000000	0.338308	79(CTATTTATAGGG,+,0.00)
mm_37979.1	chr4	133601754	133601954	-	1	NA	NA	NA	314	NM_018754	55948	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	0.050000	0.631841	
mm_90451.1	chr10	127703438	127703638	+	1	NA	NA	NA	-1718	NM_001081219	432516	Mm.90450	NM_001081219	ENSMUSG00000025401	Myo1a	BBM-I|Myhl	myosin IA	protein-coding	0.010000	0.562189	
mm_44514.1	chr5	24344459	24344659	-	1	NA	NA	NA	7045	NM_013569	16511	Mm.6539	NM_013569	ENSMUSG00000038319	Kcnh2	AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding	0.010000	0.577114	
mm_40304.1	chr5	43803531	43803731	+	1	NA	NA	NA	-15262	NM_009763	12182	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	0.000000	0.407960	
mm_81620.1	chr9	110813908	110814108	+	1	NA	NA	NA	14	NM_148940	73336	Mm.200587	NM_148940	ENSMUSG00000032493	Prss44	1700036D21Rik|79H19A|AU043574|AU043597|TESSP-4|Tessp4	protease, serine 44	protein-coding	0.050000	0.592040	
mm_164331.1	chr16	10192780	10192980	+	1	NA	NA	NA	-26	NM_153123	75329	Mm.108729	NM_029253	ENSMUSG00000039200	Atf7ip2	4930558K11Rik|BC018510|Get-1|PSM2	activating transcription factor 7 interacting protein 2	protein-coding	0.060000	0.636816	
mm_16735.1	chr2	9177784	9177984	-	1	NA	NA	NA	-11631	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.010000	0.417910	
mm_91546.1	chr10	39731742	39731942	-	1	NA	NA	NA	165	NR_038037	327744	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	0.105000	0.626866	
mm_54593.1	chr6	38253998	38254198	-	1	NA	NA	NA	-89	NM_194061	330286	Mm.277163	NM_194061	ENSMUSG00000063455	D630045J12Rik	Kiaa1549|mKIAA1549	RIKEN cDNA D630045J12 gene	protein-coding	0.185000	0.840796	
mm_126378.1	chr15	80173096	80173296	+	1	NA	NA	NA	-525	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.035000	0.577114	
mm_102501.1	chr11	60537222	60537422	-	1	NA	NA	NA	-361	NM_172943	268420	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.105000	0.641791	
mm_90575.1	chr10	128244730	128244930	+	1	NA	NA	NA	6764	NM_011589	21853	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0.040000	0.572139	
mm_63228.1	chr7	126445954	126446154	+	1	NA	NA	NA	17019	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.020000	0.537313	
mm_24408.1	chr3	90450860	90451060	+	1	NA	NA	NA	14906	NM_008727	18160	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.025000	0.597015	
mm_90921.1	chr10	12614594	12614794	-	1	NA	NA	NA	247041	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.015000	0.422886	
mm_76648.1	chr8	93130788	93130988	-	1	NA	NA	NA	395	NM_007954	13884	Mm.88078	NM_007954	ENSMUSG00000057400	Ces1c	Ces-N|Ee-1|Ee1|Es-4|Es-N|Es1|Es4|EsN|PESN	carboxylesterase 1C	protein-coding	0.010000	0.482587	
mm_100242.1	chr11	117266141	117266341	+	1	NA	NA	NA	-5	NM_001113487	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.070000	0.711443	
mm_126351.1	chr15	79912910	79913110	+	1	NA	NA	NA	17987	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.015000	0.383085	
mm_157227.1	chrX	13846658	13846858	-	1	NA	NA	NA	-202	NM_009806	12361	Mm.327591	NM_009806	ENSMUSG00000031012	Cask	DXPri1|DXRib1|LIN-2|Pals3|mLin-2	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding	0.115000	0.751244	
mm_143626.1	chr17	78882431	78882631	-	1	NA	NA	NA	41	NM_011163	19106	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	0.080000	0.631841	
mm_121382.1	chr14	118952247	118952447	+	1	NA	NA	NA	14415	NM_008929	100037258	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.020000	0.402985	
mm_117477.1	chr13	76385143	76385343	-	1	NA	NA	NA	282	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.075000	0.691542	
mm_1181.1	chr1	61662172	61662372	+	1	NA	NA	NA	23448	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0.000000	0.333333	
mm_78198.1	chr9	21367954	21368154	+	1	NA	NA	NA	183	NM_001042709	16201	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.085000	0.626866	
mm_38808.1	chr4	148214644	148214844	-	1	NA	NA	NA	54076	NM_176848	230904	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0.000000	0.592040	
mm_144690.1	chr18	34840562	34840762	+	1	NA	NA	NA	73	NM_144865	225362	Mm.293588	NM_144865	ENSMUSG00000038555	Reep2	-	receptor accessory protein 2	protein-coding	0.105000	0.721393	-87(CCCTTTAAGAGG,-,0.00),-86(CCTTTAAGAGGC,+,0.00)
mm_98974.1	chr11	98685911	98686111	+	1	NA	NA	NA	3457	NM_009439	22123	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0.035000	0.567164	
mm_77266.1	chr8	115707732	115707932	-	1	NA	NA	NA	-938	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.060000	0.542289	14(GGCTTTAAAATC,-,0.00)
mm_152444.1	chr19	10783884	10784084	-	1	NA	NA	NA	43037	NR_027805	403202	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0.015000	0.492537	
mm_142999.1	chr17	56413000	56413200	-	1	NA	NA	NA	5809	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0.015000	0.447761	
mm_73670.1	chr8	111431173	111431373	+	1	NA	NA	NA	-18927	NR_105819	102466970		NR_105819	ENSMUSG00000098410	Mir1957b	Gm27725|mmu-mir-1957b	microRNA 1957b	ncRNA	0.000000	0.393035	
mm_125652.1	chr15	62893785	62893985	+	1	NA	NA	NA	585723	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA	0.000000	0.412935	
mm_124089.1	chr14	78966475	78966675	-	1	NA	NA	NA	117397	NM_173758	219189	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	0.050000	0.527363	
mm_84484.1	chr9	66845535	66845735	-	1	NA	NA	NA	-10929	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.010000	0.348259	35(GCCTATAAATGT,-,0.00)
mm_41844.1	chr5	104434622	104434822	+	1	NA	NA	NA	-389	NM_001204201	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.015000	0.402985	
mm_163451.1	chr12	89397894	89398094	+	1	NA	NA	NA	-414489	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.005000	0.368159	
mm_51773.1	chr6	88084414	88084614	+	1	NA	NA	NA	41	NM_133933	103963	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	0.110000	0.711443	
mm_26745.1	chr3	7606412	7606612	-	1	NA	NA	NA	6381	NM_001313890	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.015000	0.522388	
mm_97196.1	chr11	75577033	75577233	+	1	NA	NA	NA	-10946	NM_008850	18738	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.015000	0.487562	
mm_69611.1	chr7	137196267	137196467	-	1	NA	NA	NA	-38316	NR_045885	100038555	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	ENSMUSG00000073800	predicted gene 10578	ncRNA	0.035000	0.542289	
mm_9212.1	chr1	171229840	171230040	-	1	NA	NA	NA	4409	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.020000	0.547264	
mm_69924.1	chr7	141884351	141884551	-	1	NA	NA	NA	17955	NM_023764	54473	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	0.020000	0.552239	
mm_108252.1	chr12	78227461	78227661	+	1	NA	NA	NA	906	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.035000	0.587065	
mm_80338.1	chr9	75071199	75071399	+	1	NA	NA	NA	93	NM_010864	17918	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	0.100000	0.691542	
mm_19652.1	chr2	102897878	102898078	-	1	NA	NA	NA	3687	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.035000	0.383085	
mm_93709.1	chr10	118796565	118796765	-	1	NA	NA	NA	72238	NM_001014390	69181	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.030000	0.497512	
mm_8662.1	chr1	156654264	156654464	-	1	NA	NA	NA	19975	NM_023141	30935	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.015000	0.467662	
mm_158948.1	chr1	85795263	85795463	+	1	NA	NA	NA	1916	NM_133781	12283	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0.015000	0.462687	-64(GCTTATATGTAC,+,0.00)
mm_5308.1	chr1	22315777	22315977	-	1	NA	NA	NA	116966	NM_053270	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.000000	0.482587	
mm_47142.1	chr5	120559655	120559855	-	1	NA	NA	NA	28858	NM_145853	252972	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.005000	0.477612	
mm_119366.1	chr14	41121703	41121903	+	1	NA	NA	NA	-9985	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.015000	0.522388	-74(CTCTTTAAAGTC,+,0.00)
mm_132402.1	chr16	35001336	35001536	+	1	NA	NA	NA	-20985	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.015000	0.467662	
mm_17143.1	chr2	25095061	25095261	-	1	NA	NA	NA	44	NM_001163626	241275	Mm.218774	NM_172204	ENSMUSG00000036805	Noxa1	NY-CO-31|SDCCAG31	NADPH oxidase activator 1	protein-coding	0.025000	0.542289	
mm_5743.1	chr1	45873300	45873500	-	1	NA	NA	NA	52194	NM_016917	53945	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.000000	0.333333	
mm_154752.1	chrX	10595917	10596117	+	1	NA	NA	NA	110901	NM_019634	21912	Mm.18590	NM_019634	ENSMUSG00000058254	Tspan7	1200014P11Rik|A15|AI323365|Cd231|Mxs1|PE31|R74651|TALLA|Tm4sf2	tetraspanin 7	protein-coding	0.020000	0.502488	
mm_11602.1	chr2	33794650	33794850	+	1	NA	NA	NA	-11066	NR_045729	320482	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0.030000	0.557214	
mm_99132.1	chr11	100319836	100320036	+	1	NA	NA	NA	-13	NM_011508	20918	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.105000	0.696517	17(GGCTATATAAGT,-,0.00)
mm_37361.1	chr4	120747300	120747500	-	1	NA	NA	NA	-224	NM_001081142	60613	Mm.249977	NM_001081142	ENSMUSG00000028631	Kcnq4	-	potassium voltage-gated channel, subfamily Q, member 4	protein-coding	0.140000	0.736318	
mm_4109.1	chr1	167598504	167598704	+	1	NA	NA	NA	242	NM_009107	20183	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0.035000	0.582090	
mm_74767.1	chr8	20921973	20922173	-	1	NA	NA	NA	-2	NM_001025353	100503992	Mm.490240	NM_001025353	ENSMUSG00000071165	Gm6040	Defb51|EG574083	predicted gene 6040	protein-coding	0.000000	0.338308	-93(GGCTTTTTATGG,-,0.00),-91(CTTTTTATGGAA,+,0.00)
mm_44906.1	chr5	35663132	35663332	-	1	NA	NA	NA	16548	NM_001042615	78558	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.005000	0.402985	
mm_100463.1	chr11	119875911	119876111	+	1	NA	NA	NA	-6278	NR_039557	100628577		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.030000	0.527363	
mm_160104.1	chr7	22871181	22871381	+	1	NA	NA	NA	57	NM_001166724	620758	Mm.480272	NM_001166724	ENSMUSG00000094931	Vmn1r160	Gm6178	vomeronasal 1 receptor 160	protein-coding	0.005000	0.477612	
mm_132373.1	chr16	34883436	34883636	+	1	NA	NA	NA	55793	NR_040536	76649	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.000000	0.343284	
mm_164346.1	chr16	16869171	16869371	-	1	NA	NA	NA	-16	NM_016982	22362	Mm.57574	NM_016982	ENSMUSG00000059305	Vpreb1	CD179a|Vpreb-1	pre-B lymphocyte gene 1	protein-coding	0.005000	0.582090	
mm_114543.1	chr13	73772806	73773006	+	1	NA	NA	NA	9209	NM_011390	20499	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.005000	0.522388	
mm_42636.1	chr5	118556397	118556597	+	1	NA	NA	NA	-4222	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.025000	0.512438	
mm_95793.1	chr11	55097874	55098074	+	1	NA	NA	NA	-11	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.070000	0.641791	
mm_35216.1	chr4	19650290	19650490	-	1	NA	NA	NA	58614	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.005000	0.427861	
mm_21437.1	chr2	158610503	158610703	-	1	NA	NA	NA	120	NR_040358	100045469	Mm.143404	NR_040358	ENSMUSG00000086496	Gm14204	OTTMUSG00000015935	predicted gene 14204	ncRNA	0.050000	0.621891	
mm_79673.1	chr9	59680078	59680278	+	1	NA	NA	NA	23810	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.105000	0.721393	
mm_133379.1	chr16	84714104	84714304	+	1	NA	NA	NA	64	NR_029565	387173		NR_029565	ENSMUSG00000065397	Mir155	Mirn155|mir-155|mmu-mir-155	microRNA 155	ncRNA	0.010000	0.502488	
mm_15232.1	chr2	154551741	154551941	+	1	NA	NA	NA	65	NM_001171640	70362	Mm.479620	NM_001171640	ENSMUSG00000078129	Actl10	1700007I08Rik	actin-like 10	protein-coding	0.005000	0.467662	
mm_144717.1	chr18	35118848	35119048	+	1	NA	NA	NA	36	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.135000	0.771144	
mm_137647.1	chr17	28549394	28549594	+	1	NA	NA	NA	7	NM_001034871	328788	Mm.99400	NM_001034871	ENSMUSG00000024224	Clpsl2	Gm749	colipase-like 2	protein-coding	0.030000	0.616915	
mm_107593.1	chr12	49377677	49377877	+	1	NA	NA	NA	-5106	NM_001160112	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.030000	0.547264	
mm_127323.1	chr15	100304104	100304304	+	1	NA	NA	NA	-613	NM_027334	70152	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	0.010000	0.388060	-100(TACTTTAAATGG,-,0.00),-98(CTTTAAATGGGC,+,0.00)
mm_51628.1	chr6	85459112	85459312	+	1	NA	NA	NA	-7242	NR_028081	73327	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	0.015000	0.532338	
mm_9738.1	chr1	180256148	180256348	-	1	NA	NA	NA	52	NM_001128605	19165	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.135000	0.761194	
mm_6621.1	chr1	75606417	75606617	-	1	NA	NA	NA	60251	NM_009208	20536	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	0.010000	0.502488	
mm_33687.1	chr4	133412071	133412271	+	1	NA	NA	NA	42395	NR_039582	100628620		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	0.050000	0.592040	
mm_104655.1	chr11	97575174	97575374	-	1	NA	NA	NA	-148	NM_018873	56013	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.165000	0.746269	
mm_51171.1	chr6	70726515	70726715	+	1	NA	NA	NA	65560	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.025000	0.472637	
mm_121271.1	chr14	103438580	103438780	+	1	NA	NA	NA	-74661	NM_022886	64929	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.000000	0.432836	
mm_12107.1	chr2	61587622	61587822	+	1	NA	NA	NA	-5375	NM_001164072	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.000000	0.373134	
mm_103795.1	chr11	82871058	82871258	-	1	NA	NA	NA	52	NM_001007465	67338	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.125000	0.791045	
mm_96992.1	chr11	70683741	70683941	+	1	NA	NA	NA	4264	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.010000	0.577114	
mm_36989.1	chr4	109674151	109674351	-	1	NA	NA	NA	-2376	NM_007983	14084	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	0.005000	0.452736	
mm_150979.1	chr19	46502208	46502408	+	1	NA	NA	NA	660	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.125000	0.756219	
mm_138773.1	chr17	37193830	37194030	+	1	NA	NA	NA	38	NM_023137	24108	Mm.140210	NM_023137	ENSMUSG00000035186	Ubd	FAT10	ubiquitin D	protein-coding	0.010000	0.432836	
mm_97854.1	chr11	83069723	83069923	+	1	NA	NA	NA	4711	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.010000	0.487562	
mm_31920.1	chr4	85388001	85388201	+	1	NA	NA	NA	182645	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.000000	0.457711	
mm_163990.1	chr14	62761017	62761217	-	1	NA	NA	NA	-5	NM_008715	18130	Mm.319684	NM_008715	ENSMUSG00000035161	Ints6	2900075H24Rik|AI480962|DICE1|Ddx26|HDB|Notch2l	integrator complex subunit 6	protein-coding	0.055000	0.601990	
mm_81091.1	chr9	106368462	106368662	+	1	NA	NA	NA	-70	NM_153459	235584	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.170000	0.810945	-36(GCCTTTAAGCCC,+,0.00)
mm_55331.1	chr6	56311056	56311256	-	1	NA	NA	NA	51236	NM_001159952	18575	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0.000000	0.402985	79(TTCCCTTTAAGG,-,0.00),81(CCCTTTAAGGTG,+,0.00)
mm_161103.1	chr12	102283648	102283848	+	1	NA	NA	NA	107	NM_001161365	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.040000	0.631841	
mm_155234.1	chrX	57200523	57200723	+	1	NA	NA	NA	-14	NR_038463	100502842	Mm.164733	NR_038463	ENSMUSG00000085808	Gm14718	OTTMUSG00000017790	predicted gene 14718	ncRNA	0.010000	0.527363	
mm_73728.1	chr8	113635474	113635674	+	1	NA	NA	NA	-12	NM_001048143	270096	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	0.070000	0.641791	
mm_29316.1	chr3	108012590	108012790	-	1	NA	NA	NA	5283	NM_010358	14862	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	0.015000	0.567164	
mm_19412.1	chr2	91710278	91710478	-	1	NA	NA	NA	214	NM_145528	51897	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	0.070000	0.616915	
mm_142936.1	chr17	56005482	56005682	-	1	NA	NA	NA	24	NM_145934	106766	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	0.020000	0.611940	
mm_132833.1	chr16	45535197	45535397	+	1	NA	NA	NA	31	NM_198106	208169	Mm.277437	NM_198106	ENSMUSG00000033210	Slc9c1	Gm610|NHE-10|Slc9a10|sNHE|spermNHE	solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1	protein-coding	0.015000	0.487562	-95(GTTTCTATAAGC,-,0.00)
mm_15556.1	chr2	158502445	158502645	+	1	NA	NA	NA	-67	NM_145635	246747	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	0.005000	0.537313	
mm_97769.1	chr11	82045613	82045813	+	1	NA	NA	NA	1	NM_013654	20306	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	0.010000	0.527363	-34(GCCTATAAAAGA,-,0.00)
mm_83966.1	chr9	57148344	57148544	-	1	NA	NA	NA	-1410	NM_028347	72774	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0.050000	0.537313	
mm_170337.1	chr18	46597670	46597870	+	1	NA	NA	NA	66	NM_010120	13664	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.090000	0.661692	
mm_107460.1	chr12	37241576	37241776	+	1	NA	NA	NA	37	NM_178767	319660	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	0.010000	0.358209	
mm_145745.1	chr18	64340133	64340333	+	1	NA	NA	NA	-131	NM_194268	225631	Mm.234723	NM_194268	ENSMUSG00000045991	Onecut2	C730009D12|OC-2|Oc2	one cut domain, family member 2	protein-coding	0.115000	0.791045	
mm_5618.1	chr1	39805228	39805428	-	1	NA	NA	NA	4	NM_001177348	100042065	Mm.209678	NM_001177348	ENSMUSG00000091937	Gm3646	-	predicted gene 3646	protein-coding	0.000000	0.402985	44(GGATTTAAAAAG,-,0.00)
mm_13461.1	chr2	105675339	105675539	+	1	NA	NA	NA	-305	NM_001244200	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.065000	0.572139	
mm_63197.1	chr7	125630520	125630720	+	1	NA	NA	NA	27191	NM_021887	60504	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.005000	0.532338	
mm_84954.1	chr9	83254348	83254548	-	1	NA	NA	NA	-107841	NM_026122	94353	Mm.244426	NM_026122	ENSMUSG00000066456	Hmgn3	1110002A15Rik|6330514M13Rik|BB071015|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding	0.030000	0.452736	
mm_134725.1	chr16	22898792	22898992	-	1	NA	NA	NA	-4506	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.060000	0.621891	
mm_100307.1	chr11	117976194	117976394	+	1	NA	NA	NA	-6928	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.025000	0.631841	
mm_51306.1	chr6	72312792	72312992	+	1	NA	NA	NA	8282	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.030000	0.572139	
mm_12623.1	chr2	74697876	74698076	+	1	NA	NA	NA	213	NM_013555	15438	Mm.26544	NM_013555	ENSMUSG00000043342	Hoxd9	Hox-4.4|Hox-5.2	homeobox D9	protein-coding	0.100000	0.656716	
mm_43076.1	chr5	124446806	124447006	+	1	NA	NA	NA	202	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.010000	0.537313	17(TTCCTTAAATGG,-,0.00),19(CCTTAAATGGAC,+,0.00),38(TCCTTTAAGGTC,+,0.00)
mm_13334.1	chr2	102785904	102786104	+	1	NA	NA	NA	79566	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.005000	0.412935	
mm_112993.1	chr13	21734963	21735163	+	1	NA	NA	NA	29	NM_178210	319159		NM_178210	ENSMUSG00000067455	Hist1h4j	-	histone cluster 1, H4j	protein-coding	0.080000	0.621891	-34(CAGTATAAAAAG,-,0.00)
mm_113013.1	chr13	21936089	21936289	+	1	NA	NA	NA	-8905	NM_183014	193452	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	0.010000	0.358209	36(TGCTTTTAAAGA,-,0.00),37(GCTTTTAAAGAT,+,0.00)
mm_76313.1	chr8	84662750	84662950	-	1	NA	NA	NA	2	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.065000	0.557214	
mm_56228.1	chr6	90599841	90600041	-	1	NA	NA	NA	-4939	NM_027868	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.030000	0.462687	
mm_143142.1	chr17	57220966	57221166	-	1	NA	NA	NA	-3838	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.040000	0.562189	5(CTGCATAAAGGC,-,0.00)
mm_49694.1	chr6	33650031	33650231	+	1	NA	NA	NA	-379317	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.000000	0.378109	
mm_26281.1	chr3	142505564	142505764	+	1	NA	NA	NA	8730	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.015000	0.407960	
mm_74856.1	chr8	24746669	24746869	-	1	NA	NA	NA	-20917	NM_001324489	11497	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	0.005000	0.363184	
mm_87605.1	chr10	57782188	57782388	+	1	NA	NA	NA	-2635	NM_021272	12140	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.040000	0.577114	
mm_149303.1	chr19	10712936	10713136	+	1	NA	NA	NA	24221	NM_181403	107305	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.025000	0.616915	
mm_128991.1	chr15	74836179	74836379	-	1	NA	NA	NA	5364	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.025000	0.616915	
mm_5326.1	chr1	23383038	23383238	-	1	NA	NA	NA	37	NM_001081079	70155	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0.180000	0.825871	
mm_19012.1	chr2	76905559	76905759	-	1	NA	NA	NA	76888	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.015000	0.348259	
mm_52389.1	chr6	113282262	113282462	+	1	NA	NA	NA	55	NM_170673	211232	Mm.65597	NM_170673	ENSMUSG00000030270	Cpne9	A730016F12Rik|mKIAA4217	copine family member IX	protein-coding	0.095000	0.741294	
mm_6964.1	chr1	86111914	86112114	-	1	NA	NA	NA	-44	NM_008311	15559	Mm.439747	NM_008311	ENSMUSG00000026228	Htr2b	5-HT2B|AJ012488|AV377389	5-hydroxytryptamine (serotonin) receptor 2B	protein-coding	0.015000	0.452736	
mm_60852.1	chr7	45833213	45833413	+	1	NA	NA	NA	-2524	NM_153419	101612	Mm.274847	NM_153419	ENSMUSG00000053801	Grwd1	A301|AI504353|Grwd|Wdr28	glutamate-rich WD repeat containing 1	protein-coding	0.120000	0.746269	
mm_151987.1	chr19	5846522	5846722	-	1	NA	NA	NA	-1142	NR_003513	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.020000	0.547264	
mm_76116.1	chr8	80800269	80800469	-	1	NA	NA	NA	-60910	NM_053124	93762	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.030000	0.442786	
mm_46239.1	chr5	99223453	99223653	-	1	NA	NA	NA	29374	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.015000	0.412935	
mm_29548.1	chr3	116807609	116807809	-	1	NA	NA	NA	457	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.015000	0.462687	
mm_147428.1	chr18	46311723	46311923	-	1	NA	NA	NA	105	NM_001160399	240261	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.155000	0.746269	
mm_101104.1	chr11	11931789	11931989	-	1	NA	NA	NA	-33745	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.010000	0.502488	
mm_112284.1	chr12	114435212	114435412	-	1	NA	NA	NA	34154	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.010000	0.407960	
mm_38906.1	chr4	149954958	149955158	-	1	NA	NA	NA	-52	NM_029035	74646	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	0.105000	0.671642	
mm_3674.1	chr1	153665573	153665773	+	1	NA	NA	NA	0	NM_001347115	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding	0.035000	0.567164	
mm_24389.1	chr3	90260868	90261068	+	1	NA	NA	NA	-5546	NM_201407	229541	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0.050000	0.641791	
mm_50681.1	chr6	51575695	51575895	+	1	NA	NA	NA	31272	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.035000	0.482587	
mm_94103.1	chr10	128566133	128566333	-	1	NA	NA	NA	-299	NM_011119	18813	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	0.095000	0.671642	
mm_126242.1	chr15	79002207	79002407	+	1	NA	NA	NA	84	NR_105921	102465577		NR_105921	ENSMUSG00000099180	Mir6956	Gm27880|mmu-mir-6956	microRNA 6956	ncRNA	0.055000	0.646766	
mm_106358.1	chr11	118393625	118393825	-	1	NA	NA	NA	8206	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.020000	0.557214	
mm_157688.1	chrX	60178160	60178360	-	1	NA	NA	NA	829	NM_001289731	109904	Mm.93796	NM_133197	ENSMUSG00000031139	Mcf2	B230117G22Rik|Dbl|Mcf-2	mcf.2 transforming sequence	protein-coding	0.015000	0.606965	
mm_38364.1	chr4	138250116	138250316	-	1	NA	NA	NA	-195	NM_001099631	230863	Mm.482408	NM_001099631	ENSMUSG00000045349	Sh2d5	BC036961	SH2 domain containing 5	protein-coding	0.080000	0.651741	
mm_17621.1	chr2	30981802	30982002	-	1	NA	NA	NA	39	NM_144885	227707	Mm.235238	NM_144885	ENSMUSG00000026851	BC005624	-	cDNA sequence BC005624	protein-coding	0.105000	0.651741	
mm_52682.1	chr6	117996989	117997189	+	1	NA	NA	NA	-14448	NM_001316749	70727	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	0.065000	0.597015	
mm_87872.1	chr10	61475708	61475908	+	1	NA	NA	NA	-25	NM_153542	216011	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0.110000	0.706468	
mm_53965.1	chr6	5819731	5819931	-	1	NA	NA	NA	94192	NM_001191026	13426	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0.010000	0.522388	
mm_11028.1	chr2	26910708	26910908	+	1	NA	NA	NA	1	NM_013721	27176	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	0.105000	0.621891	
mm_7819.1	chr1	132007392	132007592	-	1	NA	NA	NA	-113	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.095000	0.661692	
mm_45419.1	chr5	66524551	66524751	-	1	NA	NA	NA	94166	NM_009686	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.020000	0.432836	
mm_132906.1	chr16	48872649	48872849	+	1	NA	NA	NA	141	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.000000	0.432836	
mm_63620.1	chr7	128252703	128252903	+	1	NA	NA	NA	5991	NM_001289552	21804	Mm.3248	NM_009365	ENSMUSG00000030782	Tgfb1i1	ARA55|Hic5|TSC-5|hic-5	transforming growth factor beta 1 induced transcript 1	protein-coding	0.075000	0.626866	
mm_115167.1	chr13	107955508	107955708	+	1	NA	NA	NA	-65544	NM_145456	67263	Mm.490418	NM_145456	ENSMUSG00000032846	Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.035000	0.661692	
mm_30043.1	chr3	135696775	135696975	-	1	NA	NA	NA	-5328	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.010000	0.442786	
mm_114336.1	chr13	60733734	60733934	+	1	NA	NA	NA	52530	NM_199148	218275	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.010000	0.422886	
mm_10391.1	chr2	13410917	13411117	+	1	NA	NA	NA	80859	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.000000	0.447761	
mm_37867.1	chr4	132345617	132345817	-	1	NA	NA	NA	33	NM_001197082	100088	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	0.125000	0.721393	
mm_1988.1	chr1	87125300	87125500	+	1	NA	NA	NA	392	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.015000	0.582090	85(TCCCATATATGG,-,0.00),87(CCATATATGGCT,+,0.00)
mm_39073.1	chr4	154288952	154289152	-	1	NA	NA	NA	10843	NM_001112744	230972	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.005000	0.492537	
mm_3827.1	chr1	159341888	159342088	+	1	NA	NA	NA	1630	NR_039543	100628622		NR_039543	ENSMUSG00000105399	Mir1843b	mir-1843b|mmu-mir-1843b	microRNA 1843b	ncRNA	0.005000	0.363184	-42(CCTCTTAAACTC,+,0.00)
mm_99688.1	chr11	106054801	106055001	+	1	NA	NA	NA	-11206	NM_027346	70207	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	0.025000	0.542289	
mm_132629.1	chr16	38902350	38902550	+	1	NA	NA	NA	105	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.165000	0.810945	
mm_109467.1	chr12	111417359	111417559	+	1	NA	NA	NA	14	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.010000	0.592040	
mm_160513.1	chr9	21831622	21831822	-	1	NA	NA	NA	-3788	NM_001080940	624219	Mm.440264	NM_001080940	ENSMUSG00000047822	Angptl8	EG624219|Gm6484|Rifl	angiopoietin-like 8	protein-coding	0.005000	0.572139	
mm_109893.1	chr12	7380276	7380476	-	1	NA	NA	NA	-46	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA	0.005000	0.432836	-68(CTTTTTATGTGG,+,0.00)
mm_96807.1	chr11	69990968	69991168	+	1	NA	NA	NA	-302	NM_019749	56486	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0.030000	0.517413	
mm_7042.1	chr1	87101617	87101817	-	1	NA	NA	NA	-111	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.000000	0.562189	75(CCCTTTATAGCC,+,0.00)
mm_139488.1	chr17	56081345	56081545	+	1	NA	NA	NA	1814	NM_001304785	15193	Mm.12966	NM_008233	ENSMUSG00000002833	Hdgfrp2	HRP-2	hepatoma-derived growth factor, related protein 2	protein-coding	0.005000	0.572139	
mm_94082.1	chr10	128493381	128493581	-	1	NA	NA	NA	405	NM_001317218	17904	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.035000	0.547264	
mm_59452.1	chr7	27179646	27179846	+	1	NA	NA	NA	-863	NM_029391	19342	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	0.020000	0.452736	
mm_161555.1	chr16	13265100	13265300	+	1	NA	NA	NA	121	NM_181860	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.010000	0.383085	-46(GACTTTAAAAGT,-,0.00)
mm_33217.1	chr4	126612955	126613155	+	1	NA	NA	NA	3201	NM_001145950	230757	Mm.296838	NM_001013755	ENSMUSG00000073755	5730409E04Rik	7530403E16Rik|AI849033	RIKEN cDNA 5730409E04Rik gene	protein-coding	0.005000	0.447761	
mm_98990.1	chr11	98763417	98763617	+	1	NA	NA	NA	11860	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.025000	0.606965	
mm_105161.1	chr11	101599142	101599342	-	1	NA	NA	NA	-11458	NM_001256318	666331	Mm.303457	NM_001256318		LOC666331	-	uncharacterized LOC666331	protein-coding	0.035000	0.592040	
mm_79472.1	chr9	56864997	56865197	+	1	NA	NA	NA	-7	NM_139001	121021	Mm.41329	NM_139001	ENSMUSG00000032911	Cspg4	4732461B14Rik|AN2|NG2	chondroitin sulfate proteoglycan 4	protein-coding	0.090000	0.636816	
mm_116684.1	chr13	49287638	49287838	-	1	NA	NA	NA	21470	NM_015759	30938	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.005000	0.447761	
mm_67165.1	chr7	73550281	73550481	-	1	NA	NA	NA	8014	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.055000	0.467662	
mm_20525.1	chr2	130840021	130840221	-	1	NA	NA	NA	24	NM_029432	228602	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	0.150000	0.805970	
mm_65626.1	chr7	27541718	27541918	-	1	NA	NA	NA	11400	NM_011116	18807	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.025000	0.532338	
mm_89630.1	chr10	96371223	96371423	+	1	NA	NA	NA	145116	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.045000	0.532338	33(CCCTTTCTAGAC,+,0.00)
mm_144554.1	chr18	31634240	31634440	+	1	NA	NA	NA	-43	NM_172965	269003	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0.085000	0.661692	
mm_141389.1	chr17	29099531	29099731	-	1	NA	NA	NA	5862	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.010000	0.373134	
mm_10448.1	chr2	14273419	14273619	+	1	NA	NA	NA	12516	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.005000	0.348259	
mm_5395.1	chr1	33637912	33638112	-	1	NA	NA	NA	31782	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	0.035000	0.577114	
mm_146611.1	chr18	10029890	10030090	-	1	NA	NA	NA	159	NM_021522	59025	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0.090000	0.661692	
mm_444.1	chr1	34850238	34850438	+	1	NA	NA	NA	379	NM_145516	226971	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.020000	0.592040	
mm_170861.1	chr2	181917354	181917554	+	1	NA	NA	NA	53094	NM_025901	67005	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	0.005000	0.502488	
mm_163194.1	chr11	95076504	95076704	-	1	NA	NA	NA	110	NM_013565	16400	Mm.57035	NM_013565	ENSMUSG00000001507	Itga3	AA407068|CD49C|GAPB3	integrin alpha 3	protein-coding	0.075000	0.606965	
mm_38200.1	chr4	135494522	135494722	-	1	NA	NA	NA	-44	NM_001347220	74552	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	0.055000	0.577114	
mm_143700.1	chr17	80564615	80564815	-	1	NA	NA	NA	-881	NM_001033443	381113	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.005000	0.417910	
mm_7698.1	chr1	129680599	129680799	-	1	NA	NA	NA	407395	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	0.005000	0.368159	
mm_75462.1	chr8	47818082	47818282	-	1	NA	NA	NA	-3961	NM_001111318	100039801	Mm.471595	NM_001111318	ENSMUSG00000061974	Cldn24	ENSMUSG00000061974|Gm10107	claudin 24	protein-coding	0.000000	0.532338	
mm_53962.1	chr6	5496188	5496388	-	1	NA	NA	NA	-10	NM_013743	27273	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.055000	0.631841	
mm_114636.1	chr13	76420472	76420672	+	1	NA	NA	NA	35611	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.005000	0.378109	
mm_74855.1	chr8	24725925	24726125	-	1	NA	NA	NA	-173	NM_001324489	11497	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	0.025000	0.467662	
mm_117062.1	chr13	58668597	58668797	-	1	NA	NA	NA	-57820	NM_022317	114304	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.020000	0.522388	
mm_75368.1	chr8	45306078	45306278	-	1	NA	NA	NA	-11343	NM_008455	16621	Mm.482691	NM_008455	ENSMUSG00000109764	Klkb1	APS|Kal-3|Kal3|Klk3|PSA	kallikrein B, plasma 1	protein-coding	0.005000	0.412935	
mm_143885.1	chr17	84313566	84313766	-	1	NA	NA	NA	-125719	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.015000	0.482587	
mm_142613.1	chr17	46857606	46857806	-	1	NA	NA	NA	-26293	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.090000	0.651741	-61(GCCTTTTAATGA,-,0.00)
mm_94430.1	chr11	6291942	6292142	+	1	NA	NA	NA	445	NM_001252283	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.130000	0.731343	
mm_47773.1	chr5	131616465	131616665	-	1	NA	NA	NA	-263704	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.080000	0.621891	
mm_97672.1	chr11	79711200	79711400	+	1	NA	NA	NA	-669	NR_029579	387188		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	0.140000	0.776119	
mm_68823.1	chr7	126160903	126161103	-	1	NA	NA	NA	39405	NM_028816	74204	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|mKIAA0370	exportin 6	protein-coding	0.025000	0.477612	
mm_33656.1	chr4	133104431	133104631	+	1	NA	NA	NA	-26102	NM_153423	242687	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.015000	0.532338	-34(TCCTTAAAGGCC,+,0.00),-33(CCTTAAAGGCCG,+,0.00)
mm_63637.1	chr7	128523672	128523872	+	1	NA	NA	NA	189	NM_013863	29810	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0.085000	0.646766	
mm_105483.1	chr11	105940122	105940322	-	1	NA	NA	NA	3925	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.030000	0.532338	-88(GGCTCTAAAGAG,-,0.00),49(GCCTTTAAGGAG,+,0.00),50(CCTTTAAGGAGC,+,0.00)
mm_40272.1	chr5	40328565	40328765	+	1	NA	NA	NA	-684034	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.040000	0.502488	
mm_149845.1	chr19	25052339	25052539	+	1	NA	NA	NA	52910	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.005000	0.482587	
mm_95424.1	chr11	50147816	50148016	+	1	NA	NA	NA	16556	NM_029745	76795	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.005000	0.482587	-32(GTGTATAAAAGC,-,0.00)
mm_116403.1	chr13	41424886	41425086	-	1	NA	NA	NA	62374	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.005000	0.447761	
mm_89389.1	chr10	89872866	89873066	+	1	NA	NA	NA	-543	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.160000	0.830846	
mm_112086.1	chr12	112674255	112674455	-	1	NA	NA	NA	-79	NM_009652	11651	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.170000	0.840796	
mm_31730.1	chr4	62970749	62970949	+	1	NA	NA	NA	5275	NM_028326	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.005000	0.417910	
mm_67319.1	chr7	79617457	79617657	-	1	NA	NA	NA	100	NM_019799	56315	Mm.10909	NM_019799	ENSMUSG00000030549	Rhcg	BB065800	Rhesus blood group-associated C glycoprotein	protein-coding	0.080000	0.671642	
mm_126337.1	chr15	79898249	79898449	+	1	NA	NA	NA	3326	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.015000	0.532338	59(CCCCATAAAGGC,+,0.00),59(CCCCATAAAGGC,-,0.00)
mm_94873.1	chr11	24098380	24098580	+	1	NA	NA	NA	17785	NM_001159290	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.000000	0.402985	
mm_61672.1	chr7	80803416	80803616	+	1	NA	NA	NA	-185	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.070000	0.597015	70(GTTTTTAGGCGC,+,0.00)
mm_141722.1	chr17	34115142	34115342	-	1	NA	NA	NA	4658	NR_037970	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.015000	0.502488	
mm_81748.1	chr9	113931213	113931413	+	1	NA	NA	NA	379	NM_013699	22221	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0.170000	0.885572	
mm_65249.1	chr7	19861135	19861335	-	1	NA	NA	NA	64	NM_001033419	330483	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0.030000	0.552239	
mm_136908.1	chr17	13016537	13016737	+	1	NA	NA	NA	8798	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.020000	0.383085	
mm_57789.1	chr6	129271359	129271559	-	1	NA	NA	NA	3910	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.005000	0.407960	
mm_9635.1	chr1	176836056	176836256	-	1	NA	NA	NA	-23	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0.045000	0.537313	
mm_141036.1	chr17	25273449	25273649	-	1	NA	NA	NA	-118	NM_001177610	22196	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|F830028O17Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	0.125000	0.711443	-94(GCCCCTTTAAGA,-,0.00),-91(CCTTTAAGAGTG,+,0.00)
mm_92968.1	chr10	86123114	86123314	-	1	NA	NA	NA	27360	NR_038024	78170	Mm.444790	NR_038024		4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0.010000	0.487562	
mm_83879.1	chr9	55283506	55283706	-	1	NA	NA	NA	19	NM_032002	83961	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.035000	0.452736	
mm_170556.1	chr19	41525264	41525464	+	1	NA	NA	NA	112	NM_001326287	627352	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0.040000	0.537313	74(TGCCATAAAGGA,-,0.00)
mm_39828.1	chr5	30814494	30814694	+	1	NA	NA	NA	-47	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.090000	0.616915	
mm_129391.1	chr15	78204340	78204540	-	1	NA	NA	NA	-203	NM_001330686	19293	Mm.2766	NM_013645	ENSMUSG00000005716	Pvalb	PV|Parv|Pva	parvalbumin	protein-coding	0.055000	0.636816	
mm_114549.1	chr13	73963746	73963946	+	1	NA	NA	NA	-16	NM_027704	71164	Mm.66995	NM_027704	ENSMUSG00000069189	Zdhhc11	4933421L13Rik|DHHC-11|Zdhhc20	zinc finger, DHHC domain containing 11	protein-coding	0.020000	0.477612	-41(GGCTTTATGAGC,-,0.00)
mm_7217.1	chr1	93160745	93160945	-	1	NA	NA	NA	25	NM_001159940	71874	Mm.158766	NM_172411	ENSMUSG00000034159	2310007B03Rik	-	RIKEN cDNA 2310007B03 gene	protein-coding	0.015000	0.621891	
mm_76728.1	chr8	95020127	95020327	-	1	NA	NA	NA	2535	NM_173036	54672	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.005000	0.393035	
mm_33381.1	chr4	129570185	129570385	+	1	NA	NA	NA	3356	NM_001162433	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.015000	0.462687	
mm_41038.1	chr5	86085720	86085920	+	1	NA	NA	NA	14074	NM_001310639	56792	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.010000	0.398010	-76(GGCTAGAAATGG,-,0.00)
mm_4678.1	chr1	180432060	180432260	+	1	NA	NA	NA	51344	NM_001081227	381310	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|ENSMUSG00000056615|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.020000	0.532338	
mm_36059.1	chr4	57496474	57496674	-	1	NA	NA	NA	-71674	NM_001304544	677884	Mm.331630	NM_001304544	ENSMUSG00000089945	Pakap	AF064781|Gm20459|Palm2-Akap2|Palm2Akap2|Palm2akap2	paralemmin A kinase anchor protein	protein-coding	0.025000	0.512438	
mm_115958.1	chr13	23762263	23762463	-	1	NA	NA	NA	23	NM_013550	360198	Mm.221301	NM_013550	ENSMUSG00000069265	Hist1h3a	-	histone cluster 1, H3a	protein-coding	0.050000	0.517413	
mm_50765.1	chr6	53604439	53604639	+	1	NA	NA	NA	31165	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.010000	0.542289	
mm_141831.1	chr17	34628065	34628265	-	1	NA	NA	NA	114	NM_001302393	54397	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	0.060000	0.641791	77(GCCCATATAAGG,-,0.00),79(CCATATAAGGTG,+,0.00)
mm_68372.1	chr7	107952597	107952797	-	1	NA	NA	NA	-1946	NM_146495	258488	Mm.377530	NM_146495	ENSMUSG00000094197	Olfr474	MOR204-20	olfactory receptor 474	protein-coding	0.060000	0.547264	
mm_155800.1	chrX	99003234	99003434	+	1	NA	NA	NA	-39247	NM_199018	236920	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	0.015000	0.597015	
mm_132561.1	chr16	38089240	38089440	+	1	NA	NA	NA	-80	NR_033221	414072	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.115000	0.666667	
mm_29258.1	chr3	107220312	107220512	-	1	NA	NA	NA	1320	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.467662	
mm_116073.1	chr13	27642474	27642674	-	1	NA	NA	NA	-81	NM_008930	19113	Mm.196424	NM_008930	ENSMUSG00000006488	Prl7a1	AA407021|AA409971|AA410116|PLP-E|PLP-G|Prlpe|Prlpg	prolactin family 7, subfamily a, member 1	protein-coding	0.010000	0.432836	49(GACTATATAGGA,-,0.00)
mm_162914.1	chr10	119827799	119827999	+	1	NA	NA	NA	8510	NM_028736	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding	0.015000	0.477612	
mm_149129.1	chr19	9000592	9000792	+	1	NA	NA	NA	11408	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.005000	0.492537	
mm_55501.1	chr6	69764930	69765130	-	1	NA	NA	NA	-437856	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.497512	
mm_34977.1	chr4	156013742	156013942	+	1	NA	NA	NA	147	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.010000	0.517413	-33(GTTCTTATAGCC,+,0.00)
mm_54588.1	chr6	38147294	38147494	-	1	NA	NA	NA	-22808	NM_080467	140494	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	0.015000	0.512438	
mm_122695.1	chr14	52079435	52079635	-	1	NA	NA	NA	10220	NR_028552	100217457		NR_028552	ENSMUSG00000064871	Snord58b	MBII-199	small nucleolar RNA, C/D box 58B	snoRNA	0.005000	0.432836	
mm_50827.1	chr6	54679249	54679449	+	1	NA	NA	NA	-2275	NM_001289741	68235	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.005000	0.477612	-32(GAATATAAAGGG,-,0.00)
mm_124767.1	chr15	6669436	6669636	+	1	NA	NA	NA	-38845	NM_030168	78757	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.015000	0.497512	
mm_38306.1	chr4	136898717	136898917	-	1	NA	NA	NA	27	NM_007572	12259	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	0.030000	0.572139	
mm_66633.1	chr7	45523844	45524044	-	1	NA	NA	NA	2324	NM_008654	17872	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	0.015000	0.557214	
mm_134351.1	chr16	16599946	16600146	-	1	NA	NA	NA	-68	NM_001301817	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.145000	0.771144	
mm_163024.1	chr11	48808362	48808562	-	1	NA	NA	NA	5323	NR_028564	100216540		NR_028564	ENSMUSG00000064780	Snord95	-	small nucleolar RNA, C/D box 95	snoRNA	0.000000	0.482587	
mm_37265.1	chr4	118489669	118489869	-	1	NA	NA	NA	80	NM_011587	21846	Mm.4345	NM_011587	ENSMUSG00000033191	Tie1	D430008P04Rik|TIE|tie-1	tyrosine kinase with immunoglobulin-like and EGF-like domains 1	protein-coding	0.010000	0.621891	
mm_8416.1	chr1	152090183	152090383	-	1	NA	NA	NA	37	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik|ENSMUSG00000073540	RIKEN cDNA 1700025G04 gene	protein-coding	0.120000	0.766169	
mm_44459.1	chr5	22533187	22533387	-	1	NA	NA	NA	-4257	NR_004442	100042049	Mm.21724	NR_004442		Gm15421	OTTMUSG00000021442	ribosomal protein L22 like 1 pseudogene	pseudo	0.000000	0.343284	
mm_25551.1	chr3	116007399	116007599	+	1	NA	NA	NA	50	NM_001163515	58193	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	0.065000	0.646766	
mm_166996.1	chr7	46715547	46715747	-	1	NA	NA	NA	29	NM_011315	20210	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	0.020000	0.477612	
mm_98675.1	chr11	96284070	96284270	+	1	NA	NA	NA	2265	NM_010461	15416	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	0.055000	0.601990	
mm_20121.1	chr2	121235979	121236179	-	1	NA	NA	NA	35328	NM_001290830	27223	Mm.215389	NM_013735	ENSMUSG00000043909	Trp53bp1	53BP1|Tp53bp1|m53BP1|p53BP1	transformation related protein 53 binding protein 1	protein-coding	0.005000	0.482587	
mm_143416.1	chr17	70840772	70840972	-	1	NA	NA	NA	5905	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.005000	0.358209	-94(TGCTATTAAAGG,-,0.00)
mm_92777.1	chr10	81179663	81179863	-	1	NA	NA	NA	802	NR_028549	100217454		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.050000	0.616915	
mm_118107.1	chr13	103920933	103921133	-	1	NA	NA	NA	-447	NM_001005868	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.155000	0.771144	
mm_142118.1	chr17	35866402	35866602	-	1	NA	NA	NA	-113	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.085000	0.651741	
mm_138215.1	chr17	34306654	34306854	+	1	NA	NA	NA	887	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.010000	0.517413	
mm_124651.1	chr15	5185436	5185636	+	1	NA	NA	NA	-24	NM_026213	67515	Mm.254979	NM_026213	ENSMUSG00000022151	Ttc33	2410099M07Rik|2900001O04Rik|AI507072|AW538342|Osrf	tetratricopeptide repeat domain 33	protein-coding	0.050000	0.527363	
mm_109481.1	chr12	111429038	111429238	+	1	NA	NA	NA	11693	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.015000	0.527363	-4(CCTTATCTGGGC,+,0.00)
mm_119120.1	chr14	31118686	31118886	+	1	NA	NA	NA	10144	NM_001308466	66487	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0.040000	0.472637	
mm_85136.1	chr9	95754022	95754222	-	1	NA	NA	NA	-3764	NM_011643	22063	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0.005000	0.283582	
mm_11048.1	chr2	27165563	27165763	+	1	NA	NA	NA	156	NM_138942	13166	Mm.167781	NM_138942	ENSMUSG00000000889	Dbh	-	dopamine beta hydroxylase	protein-coding	0.035000	0.611940	
mm_156746.1	chrX	159973448	159973648	+	1	NA	NA	NA	-14885	NM_001163085	270672	Mm.386889	NM_001163085	ENSMUSG00000031303	Map3k15	BC031147|MEKK15	mitogen-activated protein kinase kinase kinase 15	protein-coding	0.015000	0.348259	
mm_76657.1	chr8	93197704	93197904	-	1	NA	NA	NA	0	NM_053200	104158	Mm.292803	NM_053200	ENSMUSG00000056973	Ces1d	Ces3|TGH	carboxylesterase 1D	protein-coding	0.005000	0.437811	
mm_51719.1	chr6	86850828	86851028	+	1	NA	NA	NA	1411	NM_001040106	269774	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	0.020000	0.447761	
mm_19522.1	chr2	94109156	94109356	-	1	NA	NA	NA	48653	NM_019657	56348	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0.010000	0.328358	
mm_81833.1	chr9	118478091	118478291	+	1	NA	NA	NA	2	NM_010136	13813	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	0.025000	0.527363	
mm_78851.1	chr9	44335231	44335431	+	1	NA	NA	NA	616	NM_010436	15270	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	0.090000	0.686567	-90(GCCCTTTTAAGG,-,0.00),-89(CCCTTTTAAGGG,-,0.00),-88(CCTTTTAAGGGC,+,0.00),-87(CTTTTAAGGGCC,+,0.00)
mm_23354.1	chr3	55112265	55112465	+	1	NA	NA	NA	199	NM_001144987	229285	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0.070000	0.661692	
mm_91695.1	chr10	44003482	44003682	-	1	NA	NA	NA	1264	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.125000	0.701493	
mm_8394.1	chr1	151428309	151428509	-	1	NA	NA	NA	26	NM_025819	66875	Mm.290905	NM_025819	ENSMUSG00000052748	Swt1	1200016B10Rik|C1orf26	SWT1 RNA endoribonuclease homolog (S. cerevisiae)	protein-coding	0.070000	0.621891	
mm_84744.1	chr9	75387896	75388096	-	1	NA	NA	NA	21363	NM_027418	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.005000	0.318408	
mm_98607.1	chr11	95842159	95842359	+	1	NA	NA	NA	-36	NM_023121	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.015000	0.616915	
mm_76192.1	chr8	82402890	82403090	-	1	NA	NA	NA	-404	NM_008357	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.020000	0.616915	
mm_15489.1	chr2	157562207	157562407	+	1	NA	NA	NA	2229	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.025000	0.452736	
mm_129019.1	chr15	74930733	74930933	-	1	NA	NA	NA	-24218	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.015000	0.487562	
mm_41391.1	chr5	90769599	90769799	+	1	NA	NA	NA	1181	NM_023785	57349	Mm.293614	NM_023785	ENSMUSG00000029372	Ppbp	2400003M24Rik|AI854500|CTAP3|CTAPIII|Cxcl7|LA-PF4|LDGF|MDGF|NAP-2|NAP-2-L1|Scyb7|TGB|TGB1|THBGB1|b-TG1|beta-TG	pro-platelet basic protein	protein-coding	0.000000	0.343284	
mm_44363.1	chr5	17806162	17806362	-	1	NA	NA	NA	29634	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.393035	46(TTCTTTAAAAGC,-,0.00),47(TCTTTAAAAGCT,+,0.00)
mm_75479.1	chr8	48555839	48556039	-	1	NA	NA	NA	118751	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.140000	0.766169	
mm_31672.1	chr4	60006086	60006286	+	1	NA	NA	NA	2637	NM_001081285	620807	Mm.464562	NM_001081285	ENSMUSG00000078689	Mup6	Gm12544|Mup2|OTTMUSG00000007423	major urinary protein 6	protein-coding	0.010000	0.517413	
mm_140585.1	chr17	10215129	10215329	-	1	NA	NA	NA	104132	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.000000	0.363184	-6(ATCTTTTAAAGG,-,0.00),-5(TCTTTTAAAGGT,+,0.00)
mm_65251.1	chr7	19871209	19871409	-	1	NA	NA	NA	-10010	NM_001033419	330483	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0.025000	0.587065	
mm_117424.1	chr13	74363879	74364079	-	1	NA	NA	NA	21	NM_001033042	432779	Mm.324679	NM_001033042	ENSMUSG00000021579	Lrrc14b	AI595366	leucine rich repeat containing 14B	protein-coding	0.035000	0.537313	-54(AGCTATAAATAG,-,0.00),-52(CTATAAATAGCC,+,0.00)
mm_116764.1	chr13	52584050	52584250	-	1	NA	NA	NA	713	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.035000	0.417910	-21(CGATTTTAAAGC,-,0.00),-20(GATTTTAAAGCC,+,0.00)
mm_156916.1	chrX	169091558	169091758	+	1	NA	NA	NA	-21220	NM_001287530	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.000000	0.298507	38(CTTTTTAAATGG,+,0.00)
mm_154953.1	chrX	36743580	36743780	+	1	NA	NA	NA	48	NR_075096	194744	Mm.336014	NM_001085497	ENSMUSG00000037636	Slc25a43	Gm8	solute carrier family 25, member 43	protein-coding	0.080000	0.696517	
mm_34277.1	chr4	141424445	141424645	+	1	NA	NA	NA	3766	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.005000	0.502488	
mm_16903.1	chr2	13424677	13424877	-	1	NA	NA	NA	67099	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.020000	0.427861	
mm_113407.1	chr13	33964629	33964829	+	1	NA	NA	NA	70	NM_001163241	18105	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	NAD(P)H dehydrogenase, quinone 2	protein-coding	0.045000	0.621891	
mm_128695.1	chr15	62219349	62219549	-	1	NA	NA	NA	2	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.070000	0.636816	
mm_22584.1	chr3	13471585	13471785	+	1	NA	NA	NA	30	NM_001163328	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.160000	0.786070	
mm_140883.1	chr17	23829069	23829269	-	1	NA	NA	NA	-60	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.145000	0.756219	
mm_133892.1	chr16	97489896	97490096	+	1	NA	NA	NA	14940	NM_020622	52793	Mm.327932	NM_020622	ENSMUSG00000022938	Fam3b	2-21|9030624C24Rik|D16Jhu19e|ORF9|Pander	family with sequence similarity 3, member B	protein-coding	0.015000	0.432836	
mm_15551.1	chr2	158416617	158416817	+	1	NA	NA	NA	6864	NM_001291138	228850	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0.000000	0.303483	
mm_143691.1	chr17	80289712	80289912	-	1	NA	NA	NA	-400	NM_194269	378462	Mm.45208	NM_194269	ENSMUSG00000045257	Morn2	Mopt	MORN repeat containing 2	protein-coding	0.045000	0.587065	
mm_98469.1	chr11	94950197	94950397	+	1	NA	NA	NA	14073	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.010000	0.592040	
mm_15682.1	chr2	163602245	163602445	+	1	NA	NA	NA	31	NR_131225	76080	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.160000	0.756219	
mm_148629.1	chr19	5454326	5454526	+	1	NA	NA	NA	3137	NM_198616	240514	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	0.035000	0.572139	
mm_145586.1	chr18	60985648	60985848	+	1	NA	NA	NA	22194	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.005000	0.542289	
mm_72804.1	chr8	87472744	87472944	+	1	NA	NA	NA	32	NR_033430	100040294	Mm.213632	NR_033430	ENSMUSG00000097248	Gm2694	C230036H16Rik|linc1582	predicted gene 2694	ncRNA	0.140000	0.736318	
mm_23672.1	chr3	68572412	68572612	+	1	NA	NA	NA	144	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.065000	0.636816	
mm_173135.1	chrX	20239310	20239510	+	1	NA	NA	NA	52354	NM_177353	236727	Mm.132983	NM_177353	ENSMUSG00000037341	Slc9a7	A530087D17Rik|NHE7	solute carrier family 9 (sodium/hydrogen exchanger), member 7	protein-coding	0.030000	0.437811	
mm_16803.1	chr2	10119489	10119689	-	1	NA	NA	NA	11094	NM_010582	16425	Mm.182043	NM_010582	ENSMUSG00000037254	Itih2	AI747202|Intin2|Itih-2	inter-alpha trypsin inhibitor, heavy chain 2	protein-coding	0.020000	0.502488	
mm_122022.1	chr14	28674717	28674917	-	1	NA	NA	NA	163412	NM_001256224	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.000000	0.462687	
mm_103811.1	chr11	83002459	83002659	-	1	NA	NA	NA	-10729	NM_172796	237886	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.025000	0.547264	
mm_85562.1	chr9	106891320	106891520	-	1	NA	NA	NA	518	NM_029103	74840	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	0.005000	0.472637	
mm_104180.1	chr11	87751595	87751795	-	1	NA	NA	NA	-5169	NR_029555	387160		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.010000	0.517413	
mm_101550.1	chr11	33578876	33579076	-	1	NA	NA	NA	-19	NM_146017	216643	Mm.99989	NM_146017	ENSMUSG00000020159	Gabrp	-	gamma-aminobutyric acid (GABA) A receptor, pi	protein-coding	0.015000	0.552239	
mm_78796.1	chr9	44046744	44046944	+	1	NA	NA	NA	3460	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.055000	0.552239	
mm_172323.1	chr7	106567829	106568029	-	1	NA	NA	NA	76716	NM_001277179	434223	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	0.025000	0.482587	-34(GTGTATATAAGC,-,0.00)
mm_97348.1	chr11	77469785	77469985	+	1	NA	NA	NA	5972	NM_139130	216961	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.010000	0.507463	
mm_92840.1	chr10	81499600	81499800	-	1	NA	NA	NA	437	NM_010102	13611	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0.015000	0.616915	
mm_59534.1	chr7	27731351	27731551	+	1	NA	NA	NA	42	NM_009560	22718	Mm.66913	NM_009560	ENSMUSG00000037640	Zfp60	6330516O17Rik|AI426106|AI449354|Mfg-3|Mfg3	zinc finger protein 60	protein-coding	0.075000	0.601990	
mm_30110.1	chr3	139002274	139002474	-	1	NA	NA	NA	72827	NM_145544	229877	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.020000	0.497512	
mm_88129.1	chr10	69328169	69328369	+	1	NA	NA	NA	24643	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.020000	0.427861	-92(GTCTTTTTATGG,-,0.00),-90(CTTTTTATGGCC,+,0.00)
mm_141657.1	chr17	33718564	33718764	-	1	NA	NA	NA	13	NM_145486	224703	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	0.110000	0.721393	
mm_117978.1	chr13	100103973	100104173	-	1	NA	NA	NA	-3	NM_001081061	544971	Mm.288546	NM_001081061	ENSMUSG00000049658	Bdp1	AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding	0.115000	0.636816	
mm_57230.1	chr6	123282660	123282860	-	1	NA	NA	NA	7111	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.313433	
mm_161550.1	chr16	10395398	10395598	-	1	NA	NA	NA	-33	NM_001291001	70426	Mm.142181	NM_001099275	ENSMUSG00000039179	Tekt5	3300001K11Rik	tektin 5	protein-coding	0.015000	0.532338	
mm_2783.1	chr1	130841598	130841798	+	1	NA	NA	NA	15014	NM_011082	18703	Mm.276414	NM_011082	ENSMUSG00000026417	Pigr	-	polymeric immunoglobulin receptor	protein-coding	0.030000	0.532338	
mm_74989.1	chr8	27166988	27167188	-	1	NA	NA	NA	7558	NM_029423	75767	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.010000	0.447761	
mm_85850.1	chr9	110654091	110654291	-	1	NA	NA	NA	-30	NM_183276	235627	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0.060000	0.681592	
mm_12024.1	chr2	58159810	58160010	+	1	NA	NA	NA	212	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.050000	0.562189	
mm_22013.1	chr2	167777804	167778004	-	1	NA	NA	NA	86727	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.035000	0.597015	
mm_96799.1	chr11	69981158	69981358	+	1	NA	NA	NA	-23	NM_018740	54351	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.070000	0.671642	
mm_79342.1	chr9	53383961	53384161	+	1	NA	NA	NA	38	NM_212445	68304	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0.135000	0.810945	
mm_159358.1	chr3	84815271	84815471	+	1	NA	NA	NA	-206	NM_001177773	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.065000	0.761194	
mm_139026.1	chr17	46159488	46159688	+	1	NA	NA	NA	-1444	NM_019581	56055	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.005000	0.442786	
mm_112605.1	chr13	14236841	14237041	+	1	NA	NA	NA	173157	NM_198122	94246	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.025000	0.467662	
mm_153895.1	chr19	46987715	46987915	-	1	NA	NA	NA	-18248	NM_001164365	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.020000	0.567164	
mm_9612.1	chr1	176213839	176214039	-	1	NA	NA	NA	3	NM_001195816	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	0.040000	0.532338	
mm_19127.1	chr2	80129088	80129288	-	1	NA	NA	NA	-217	NM_016744	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.035000	0.472637	
mm_170158.1	chr17	47196202	47196402	+	1	NA	NA	NA	-33928	NM_172622	224829	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.020000	0.537313	
mm_29765.1	chr3	127225220	127225420	-	1	NA	NA	NA	64015	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.000000	0.373134	
mm_131723.1	chr16	21692929	21693129	+	1	NA	NA	NA	1636	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.030000	0.442786	
mm_60687.1	chr7	45155728	45155928	+	1	NA	NA	NA	-118	NM_001285904	68845	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	0.030000	0.512438	
mm_64029.1	chr7	140769077	140769277	+	1	NA	NA	NA	5345	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.025000	0.502488	
mm_52409.1	chr6	113389011	113389211	+	1	NA	NA	NA	-149	NM_001142732	101100	Mm.388573	NM_133923	ENSMUSG00000030276	Ttll3	4833441J24Rik|AI450050	tubulin tyrosine ligase-like family, member 3	protein-coding	0.020000	0.447761	
mm_62910.1	chr7	117485436	117485636	+	1	NA	NA	NA	104557	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.005000	0.412935	
mm_145918.1	chr18	67066485	67066685	+	1	NA	NA	NA	-21713	NM_177137	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.015000	0.547264	
mm_96102.1	chr11	60536506	60536706	+	1	NA	NA	NA	-1077	NM_172943	268420	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.015000	0.512438	
mm_13977.1	chr2	121449278	121449478	+	1	NA	NA	NA	180	NR_110986	378702	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	0.110000	0.666667	
mm_80980.1	chr9	103215733	103215933	+	1	NA	NA	NA	-13768	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.020000	0.442786	
mm_120783.1	chr14	74641886	74642086	+	1	NA	NA	NA	1146	NM_172812	15558	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	0.030000	0.457711	
mm_114169.1	chr13	55471667	55471867	+	1	NA	NA	NA	6009	NR_105909	102465569		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0.115000	0.761194	
mm_94845.1	chr11	23754442	23754642	+	1	NA	NA	NA	16428	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.000000	0.437811	
mm_131717.1	chr16	21339857	21340057	+	1	NA	NA	NA	-6601	NR_131983	76222	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0.015000	0.601990	
mm_116115.1	chr13	28950186	28950386	-	1	NA	NA	NA	3396	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.020000	0.363184	
mm_83340.1	chr9	44287960	44288160	-	1	NA	NA	NA	184	NM_138955	192663	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP-binding cassette, sub-family G (WHITE), member 4	protein-coding	0.100000	0.681592	
mm_131941.1	chr16	23988900	23989100	+	1	NA	NA	NA	-388	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.075000	0.542289	
mm_69101.1	chr7	127020035	127020235	-	1	NA	NA	NA	1076	NM_001102563	69017	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.005000	0.592040	
mm_130194.1	chr15	94565931	94566131	-	1	NA	NA	NA	22371	NM_029926	266632	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	0.025000	0.557214	
mm_57671.1	chr6	128488896	128489096	-	1	NA	NA	NA	37724	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.035000	0.542289	
mm_126762.1	chr15	85859617	85859817	+	1	NA	NA	NA	10	NM_001168672	29870	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding	0.080000	0.606965	
mm_27336.1	chr3	50406270	50406470	-	1	NA	NA	NA	37243	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.333333	5(GTTTATAAAGAA,+,0.00)
mm_295.1	chr1	23271711	23271911	+	1	NA	NA	NA	-458	NR_029533	387225		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0.005000	0.417910	
mm_26470.1	chr3	144570207	144570407	+	1	NA	NA	NA	-91	NM_011828	23908	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.105000	0.666667	
mm_10112.1	chr2	3713362	3713562	+	1	NA	NA	NA	4	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.150000	0.736318	
mm_109998.1	chr12	15815945	15816145	-	1	NA	NA	NA	740	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.090000	0.597015	
mm_158099.1	chrX	101734063	101734263	-	1	NA	NA	NA	-16	NM_009910	12766	Mm.12876	NM_009910	ENSMUSG00000050232	Cxcr3	Cd183|Cmkar3	chemokine (C-X-C motif) receptor 3	protein-coding	0.025000	0.567164	
mm_154811.1	chrX	13632689	13632889	+	1	NA	NA	NA	20	NM_011823	23890	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	0.010000	0.447761	
mm_46961.1	chr5	115134838	115135038	-	1	NA	NA	NA	37	NM_175352	106840	Mm.29241	NM_175352	ENSMUSG00000046562	Unc119b	AA407659|AI414892	unc-119 lipid binding chaperone B	protein-coding	0.095000	0.761194	
mm_125604.1	chr15	60141983	60142183	+	1	NA	NA	NA	-125465	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.020000	0.492537	
mm_3957.1	chr1	164115208	164115408	+	1	NA	NA	NA	44	NM_011347	20344	Mm.3337	NM_011347	ENSMUSG00000026580	Selp	CD62P|GMP-140|Grmp|LECAM3|PADGEM	selectin, platelet	protein-coding	0.020000	0.457711	
mm_127797.1	chr15	3583403	3583603	-	1	NA	NA	NA	-151	NM_010284	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.070000	0.631841	
mm_123442.1	chr14	64949641	64949841	-	1	NA	NA	NA	116	NM_177338	219150	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.040000	0.666667	
mm_142611.1	chr17	46857414	46857614	-	1	NA	NA	NA	-26101	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.120000	0.716418	
mm_69499.1	chr7	134225299	134225499	-	1	NA	NA	NA	-302	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.090000	0.686567	
mm_158537.1	chrX	143932939	143933139	-	1	NA	NA	NA	85	NM_001110222	13193	Mm.12871	NM_010025	ENSMUSG00000031285	Dcx	Dbct	doublecortin	protein-coding	0.025000	0.442786	
mm_154869.1	chrX	20680705	20680905	+	1	NA	NA	NA	-7149	NM_001310456	18555	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	0.015000	0.492537	-56(GCATCTAAAGGG,-,0.00)
mm_54889.1	chr6	44083212	44083412	-	1	NA	NA	NA	-417034	NM_013861	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.010000	0.487562	
mm_9055.1	chr1	167331218	167331418	-	1	NA	NA	NA	-18673	NM_019993	56752	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.030000	0.537313	
mm_85327.1	chr9	101862562	101862762	-	1	NA	NA	NA	442313	NR_106163	102466241		NR_106163	ENSMUSG00000098521	Mir7243	Gm27363|mmu-mir-7243	microRNA 7243	ncRNA	0.030000	0.522388	
mm_64858.1	chr7	13037563	13037763	-	1	NA	NA	NA	-36	NM_001243968	22192	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0.115000	0.691542	
mm_124507.1	chr14	121915643	121915843	-	1	NA	NA	NA	31	NM_182806	110168	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	0.020000	0.517413	
mm_74903.1	chr8	25202343	25202543	-	1	NA	NA	NA	-901	NM_177089	320165	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.015000	0.447761	
mm_108598.1	chr12	85447478	85447678	+	1	NA	NA	NA	-26323	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.020000	0.472637	
mm_50125.1	chr6	41538975	41539175	+	1	NA	NA	NA	17299	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.417910	
mm_19415.1	chr2	91710492	91710692	-	1	NA	NA	NA	0	NM_145528	51897	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	0.055000	0.502488	
mm_14174.1	chr2	126707318	126707518	+	1	NA	NA	NA	90	NM_019729	84092	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	0.145000	0.701493	
mm_43342.1	chr5	135121665	135121865	+	1	NA	NA	NA	14874	NM_021455	58805	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	0.035000	0.552239	
mm_158528.1	chrX	143861077	143861277	-	1	NA	NA	NA	-33765	NM_007603	12338	Mm.30290	NM_007603	ENSMUSG00000067276	Capn6	-	calpain 6	protein-coding	0.005000	0.288557	35(CTTTATATACAG,+,0.00)
mm_88238.1	chr10	71478507	71478707	+	1	NA	NA	NA	130844	NM_027184	69718	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.015000	0.457711	
mm_162633.1	chr1	188654566	188654766	+	1	NA	NA	NA	353174	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.055000	0.522388	
mm_156863.1	chrX	164436811	164437011	+	1	NA	NA	NA	-83	NM_026853	68854	Mm.33225	NM_026853	ENSMUSG00000031382	Asb11	1110067L12Rik|1600009D24Rik	ankyrin repeat and SOCS box-containing 11	protein-coding	0.025000	0.412935	
mm_166850.1	chr7	19696748	19696948	+	1	NA	NA	NA	1550	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.100000	0.656716	
mm_63790.1	chr7	132610593	132610793	+	1	NA	NA	NA	50	NM_029609	76429	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.120000	0.661692	
mm_74679.1	chr8	14029458	14029658	-	1	NA	NA	NA	30618	NR_131136	546036	Mm.31785	NR_131136	ENSMUSG00000110058	Gm5907	EG546036|Gm845	predicted gene 5907	ncRNA	0.010000	0.462687	-35(AGCTTTTAAAGA,-,0.00),-34(GCTTTTAAAGAG,+,0.00)
mm_47545.1	chr5	124329851	124330051	-	1	NA	NA	NA	1862	NM_001134717	72650	Mm.121658	NM_028310	ENSMUSG00000047635	2810006K23Rik	-	RIKEN cDNA 2810006K23 gene	protein-coding	0.000000	0.417910	
mm_51992.1	chr6	92092294	92092494	+	1	NA	NA	NA	-39	NM_001347342	22026	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.070000	0.691542	
mm_82920.1	chr9	35098970	35099170	-	1	NA	NA	NA	-17658	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.005000	0.492537	
mm_160391.1	chr8	55940791	55940991	+	1	NA	NA	NA	66	NM_080438	110304	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	0.035000	0.487562	
mm_77028.1	chr8	109251301	109251501	-	1	NA	NA	NA	89507	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo	0.045000	0.587065	
mm_87314.1	chr10	42806527	42806727	+	1	NA	NA	NA	45131	NM_153055	140740	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0.015000	0.402985	-74(TAGTTTAAAAGA,-,0.00)
mm_5933.1	chr1	55363252	55363452	-	1	NA	NA	NA	117	NM_029267	75388	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	bol, boule-like (Drosophila)	protein-coding	0.150000	0.711443	
mm_5428.1	chr1	34485858	34486058	-	1	NA	NA	NA	-12472	NM_009355	21755	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0.035000	0.487562	
mm_82943.1	chr9	35305373	35305573	-	1	NA	NA	NA	24368	NR_040715	71133	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.025000	0.353234	
mm_62394.1	chr7	101092779	101092979	+	1	NA	NA	NA	-15896	NM_001146010	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.025000	0.572139	
mm_129925.1	chr15	84446459	84446659	-	1	NA	NA	NA	51	NM_001347543	72301	Mm.275387	NM_001163145	ENSMUSG00000062760	1810041L15Rik	Kiaa1644	RIKEN cDNA 1810041L15 gene	protein-coding	0.135000	0.716418	
mm_129578.1	chr15	79739393	79739593	-	1	NA	NA	NA	3043	NM_194342	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.025000	0.577114	
mm_115895.1	chr13	22041260	22041460	-	1	NA	NA	NA	2	NM_175656	319158	Mm.14775	NM_175656	ENSMUSG00000060639	Hist1h4i	-	histone cluster 1, H4i	protein-coding	0.070000	0.587065	-36(CCCTATAAGAGG,-,0.00)
mm_94871.1	chr11	24078266	24078466	+	1	NA	NA	NA	310	NM_001159289	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.100000	0.582090	
mm_44562.1	chr5	24622570	24622770	-	1	NA	NA	NA	-20668	NM_025891	66993	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.000000	0.611940	-100(CCTTTAAAGGAA,+,0.00)
mm_7440.1	chr1	120073929	120074129	-	1	NA	NA	NA	-249	NM_019432	170706	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0.035000	0.527363	
mm_27090.1	chr3	30048113	30048313	-	1	NA	NA	NA	-35009	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.005000	0.457711	
mm_149936.1	chr19	27216927	27217127	+	1	NA	NA	NA	7	NM_001161420	22359	Mm.4141	NM_013703	ENSMUSG00000024924	Vldlr	AA408956|AI451093|AW047288	very low density lipoprotein receptor	protein-coding	0.120000	0.756219	
mm_137952.1	chr17	32902335	32902535	+	1	NA	NA	NA	-10832	NM_207245	240066	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0.000000	0.527363	
mm_123371.1	chr14	63191835	63192035	-	1	NA	NA	NA	1590	NM_201610	382913	Mm.239490	NM_201610	ENSMUSG00000035121	Neil2	Gm1212|NEH2	nei like 2 (E. coli)	protein-coding	0.005000	0.537313	
mm_123125.1	chr14	56174508	56174708	-	1	NA	NA	NA	-9	NM_153052	245839	Mm.207063	NM_153052	ENSMUSG00000015443	Gzmn	GrN	granzyme N	protein-coding	0.015000	0.388060	83(CTCTCTTAAAGA,-,0.00)
mm_115826.1	chr13	21286370	21286570	-	1	NA	NA	NA	6216	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.005000	0.422886	
mm_164791.1	chr18	12744475	12744675	+	1	NA	NA	NA	3220	NM_027687	71132	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.005000	0.402985	
mm_134417.1	chr16	17722848	17723048	-	1	NA	NA	NA	-1	NM_001040683	94112	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.085000	0.626866	
mm_59083.1	chr7	19689463	19689663	+	1	NA	NA	NA	3096	NM_001110009	11812	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0.040000	0.532338	
mm_78970.1	chr9	45318979	45319179	+	1	NA	NA	NA	-21	NM_001013373	214531	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.055000	0.641791	
mm_150477.1	chr19	38930815	38931015	+	1	NA	NA	NA	-75	NM_008234	15201	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	0.135000	0.651741	
mm_56477.1	chr6	99087421	99087621	-	1	NA	NA	NA	-59223	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.020000	0.507463	
mm_81707.1	chr9	111311445	111311645	+	1	NA	NA	NA	-194	NM_001164659	320429	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	0.090000	0.721393	
mm_113920.1	chr13	49582460	49582660	+	1	NA	NA	NA	-187	NM_012050	27047	Mm.390589	NM_012050	ENSMUSG00000048368	Omd	OSAD|SLRR2C	osteomodulin	protein-coding	0.000000	0.313433	
mm_110013.1	chr12	16604037	16604237	-	1	NA	NA	NA	-14367	NM_172950	14245	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188	lipin 1	protein-coding	0.010000	0.542289	
mm_167853.1	chrX	9747699	9747899	+	1	NA	NA	NA	-84816	NM_025975	67117	Mm.29150	NM_025975	ENSMUSG00000031176	Dynlt3	2310075M16Rik|AU042796|Tcte1l	dynein light chain Tctex-type 3	protein-coding	0.055000	0.592040	
mm_85867.1	chr9	110879361	110879561	-	1	NA	NA	NA	622	NM_146260	20776	Mm.390229	NM_146260	ENSMUSG00000049555	Tmie	5131400L21Rik|Mm.87012|sr	transmembrane inner ear	protein-coding	0.010000	0.587065	
mm_69944.1	chr7	142175904	142176104	-	1	NA	NA	NA	1	NM_027844	71623	Mm.293700	NM_027844	ENSMUSG00000054759	Krtap5-2	4833428E21Rik	keratin associated protein 5-2	protein-coding	0.000000	0.552239	-35(GGGTATAAAAGC,-,0.00)
mm_47371.1	chr5	122952097	122952297	-	1	NA	NA	NA	36902	NM_001003953	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.080000	0.646766	
mm_27528.1	chr3	57387645	57387845	-	1	NA	NA	NA	-37665	NM_145539	229302	Mm.26618	NM_145539	ENSMUSG00000027801	Tm4sf4	Iltmp	transmembrane 4 superfamily member 4	protein-coding	0.005000	0.388060	
mm_120790.1	chr14	74733331	74733531	+	1	NA	NA	NA	1134	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.005000	0.467662	
mm_5193.1	chr1	13259428	13259628	-	1	NA	NA	NA	112901	NM_001302702	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.045000	0.606965	
mm_143507.1	chr17	71752809	71753009	-	1	NA	NA	NA	-24	NM_146082	225004	Mm.134151	NM_146082	ENSMUSG00000044375	BC027072	-	cDNA sequence BC027072	protein-coding	0.015000	0.507463	
mm_78972.1	chr9	45346706	45346906	+	1	NA	NA	NA	-23379	NM_022004	59095	Mm.208287	NM_022004	ENSMUSG00000066705	Fxyd6	0610030I18Rik|Php	FXYD domain-containing ion transport regulator 6	protein-coding	0.005000	0.313433	
mm_6254.1	chr1	68978622	68978822	-	1	NA	NA	NA	129337	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	0.015000	0.363184	
mm_42598.1	chr5	117414715	117414915	+	1	NA	NA	NA	813	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.025000	0.562189	
mm_46934.1	chr5	114772558	114772758	-	1	NA	NA	NA	833	NM_019834	26431	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0.040000	0.497512	
mm_107087.1	chr12	17370961	17371161	+	1	NA	NA	NA	15669	NR_037226	100526470		NR_037226	ENSMUSG00000093037	Mir3066	mir-3066|mmu-mir-3066	microRNA 3066	ncRNA	0.015000	0.398010	
mm_41592.1	chr5	93270404	93270604	+	1	NA	NA	NA	2931	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0.000000	0.318408	70(GCTTTTAAACCA,+,0.00)
mm_80583.1	chr9	84239207	84239407	+	1	NA	NA	NA	290526	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.000000	0.407960	
mm_95803.1	chr11	55109611	55109811	+	1	NA	NA	NA	11726	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.010000	0.482587	
mm_23966.1	chr3	84952431	84952631	+	1	NA	NA	NA	320	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.035000	0.472637	-68(CCTTTTCTGGCG,+,0.00)
mm_64104.1	chr7	141025065	141025265	+	1	NA	NA	NA	-8273	NM_001033632	213002	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.005000	0.552239	-39(CATTATAAAAGG,-,0.00)
mm_144377.1	chr18	20558179	20558379	+	1	NA	NA	NA	205	NM_007883	13511	Mm.345891	NM_007883	ENSMUSG00000044393	Dsg2	AA408168|D18Ertd293e	desmoglein 2	protein-coding	0.115000	0.756219	
mm_70450.1	chr8	11779119	11779319	+	1	NA	NA	NA	20889	NM_001113518	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.010000	0.482587	
mm_64836.1	chr7	12997335	12997535	-	1	NA	NA	NA	757	NM_009512	26459	Mm.10984	NM_009512	ENSMUSG00000030382	Slc27a5	FACVL3|FATP5|VLCS-H2|VLCSH2|Vlacsr	solute carrier family 27 (fatty acid transporter), member 5	protein-coding	0.015000	0.552239	
mm_139417.1	chr17	53479125	53479325	+	1	NA	NA	NA	-9	NM_025887	271457	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0.115000	0.686567	
mm_80316.1	chr9	74861802	74862002	+	1	NA	NA	NA	-19	NM_008262	15379	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	0.130000	0.751244	
mm_42195.1	chr5	112277369	112277569	+	1	NA	NA	NA	778	NM_009419	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.030000	0.402985	
mm_41067.1	chr5	87666109	87666309	+	1	NA	NA	NA	1	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.343284	-33(GTTTAAATAGTC,+,0.00)
mm_29092.1	chr3	104776150	104776350	-	1	NA	NA	NA	1297	NM_183224	329731	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	0.010000	0.532338	
mm_116480.1	chr13	43615977	43616177	-	1	NA	NA	NA	280	NM_183204	328234	Mm.40588	NM_183204	ENSMUSG00000044164	Rnf182	C630023L15Rik	ring finger protein 182	protein-coding	0.115000	0.741294	
mm_163450.1	chr12	88381626	88381826	+	1	NA	NA	NA	-4403	NR_045888	71818	Mm.490789	NR_045888		3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0.005000	0.487562	
mm_55160.1	chr6	51848579	51848779	-	1	NA	NA	NA	163870	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.015000	0.378109	
mm_130061.1	chr15	89187308	89187508	-	1	NA	NA	NA	-1871	NR_105923	102465578		NR_105923	ENSMUSG00000098663	Mir6958	Gm27581|mmu-mir-6958	microRNA 6958	ncRNA	0.040000	0.601990	
mm_74766.1	chr8	20921946	20922146	-	1	NA	NA	NA	25	NM_001025353	100503992	Mm.490240	NM_001025353	ENSMUSG00000071165	Gm6040	Defb51|EG574083	predicted gene 6040	protein-coding	0.000000	0.358209	
mm_157067.1	chrX	8192755	8192955	-	1	NA	NA	NA	657	NM_007898	13595	Mm.27183	NM_007898	ENSMUSG00000031168	Ebp	AI255399|Pabp|SI|Td|mSI	phenylalkylamine Ca2+ antagonist (emopamil) binding protein	protein-coding	0.065000	0.636816	
mm_82963.1	chr9	35620706	35620906	-	1	NA	NA	NA	-8921	NM_020264	56872	Mm.390143	NM_020264	ENSMUSG00000032099	Pate4	9530004K16Rik|Pate-B|Svs7	prostate and testis expressed 4	protein-coding	0.010000	0.378109	-33(ACCTATAAAAGA,-,0.00)
mm_44859.1	chr5	34288196	34288396	-	1	NA	NA	NA	28	NM_001015039	231125	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.155000	0.766169	
mm_67654.1	chr7	84689837	84690037	-	1	NA	NA	NA	297	NR_038175	72495	Mm.382914	NR_038175	ENSMUSG00000085236	2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA	0.150000	0.736318	
mm_70101.1	chr7	142661132	142661332	-	1	NA	NA	NA	39	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.075000	0.592040	
mm_67725.1	chr7	90107983	90108183	-	1	NA	NA	NA	21391	NR_046006	78329	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	0.030000	0.532338	
mm_68687.1	chr7	119472404	119472604	-	1	NA	NA	NA	6758	NM_009470	22242	Mm.10826	NM_009470	ENSMUSG00000030963	Umod	THP|Urehd1|urehr4	uromodulin	protein-coding	0.005000	0.507463	
mm_107251.1	chr12	27342817	27343017	+	1	NA	NA	NA	-199	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.090000	0.631841	
mm_151789.1	chr19	5389833	5390033	-	1	NA	NA	NA	-1230	NM_016882	20227	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	0.035000	0.577114	
mm_13801.1	chr2	118996946	118997146	+	1	NA	NA	NA	32347	NM_199310	269336	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	0.005000	0.497512	-32(GCTTAAAGAGAG,+,0.00)
mm_155821.1	chrX	100626015	100626215	+	1	NA	NA	NA	50	NM_008446	16571	Mm.383091	NM_008446	ENSMUSG00000034311	Kif4	AI323435|D330050K22Rik|Kns4	kinesin family member 4	protein-coding	0.080000	0.572139	
mm_86101.1	chr9	115310029	115310229	-	1	NA	NA	NA	292	NM_024222	68292	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0.125000	0.756219	
mm_108062.1	chr12	73936112	73936312	+	1	NA	NA	NA	-28318	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.010000	0.313433	
mm_78083.1	chr9	16114499	16114699	+	1	NA	NA	NA	-240043	NM_145712	244701	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0.000000	0.368159	
mm_54236.1	chr6	28242239	28242439	-	1	NA	NA	NA	19262	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.010000	0.288557	
mm_138561.1	chr17	35335770	35335970	+	1	NA	NA	NA	-6463	NM_010392	15013	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|ENSMUSG00000079507|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	0.050000	0.462687	
mm_136545.1	chr16	97962141	97962341	-	1	NA	NA	NA	381	NM_001081685	114565	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0.090000	0.676617	
mm_56637.1	chr6	113195244	113195444	-	1	NA	NA	NA	40	NM_177763	269788	Mm.37943	NM_177763	ENSMUSG00000042873	Lhfpl4	1190004M23Rik|AI604880|B230384L07|mKIAA4027	lipoma HMGIC fusion partner-like protein 4	protein-coding	0.150000	0.741294	
mm_169338.1	chr14	123671172	123671372	+	1	NA	NA	NA	11132	NM_145467	223272	Mm.383176	NM_145467	ENSMUSG00000032925	Itgbl1	B930011D01Rik	integrin, beta-like 1	protein-coding	0.050000	0.567164	
mm_26177.1	chr3	138289708	138289908	+	1	NA	NA	NA	12163	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.020000	0.497512	
mm_92001.1	chr10	62231151	62231351	-	1	NA	NA	NA	-33	NM_197996	70423	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0.125000	0.726368	
mm_54123.1	chr6	18388062	18388262	-	1	NA	NA	NA	126663	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding	0.020000	0.487562	
mm_127708.1	chr15	103009394	103009594	+	1	NA	NA	NA	-68	NM_010465	15425	Mm.4444	NM_010465	ENSMUSG00000001661	Hoxc6	Hox-3.3|Hox-6.1	homeobox C6	protein-coding	0.025000	0.442786	
mm_19117.1	chr2	80005882	80006082	-	1	NA	NA	NA	-97583	NM_001009978	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.005000	0.467662	
mm_100757.1	chr11	4427185	4427385	-	1	NA	NA	NA	13797	NM_029458	75828	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0.025000	0.442786	78(CCTTTTCTACTC,+,0.00)
mm_168049.1	chrY	90811696	90811896	+	1	NA	NA	NA	26354	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.000000	0.467662	
mm_137703.1	chr17	29093672	29093872	+	1	NA	NA	NA	3	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.070000	0.636816	
mm_120045.1	chr14	56575518	56575718	+	1	NA	NA	NA	-1	NM_001145978	328417	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	0.090000	0.711443	-62(CCTCTAAGGGGC,+,0.00)
mm_110550.1	chr12	55489853	55490053	-	1	NA	NA	NA	2694	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.005000	0.373134	
mm_68310.1	chr7	105752114	105752314	-	1	NA	NA	NA	21	NM_009906	12751	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	0.010000	0.512438	
mm_150230.1	chr19	33972943	33973143	+	1	NA	NA	NA	11795	NM_026334	67717	Mm.329816	NM_026334	ENSMUSG00000024768	Lipf	2310051B21Rik|AV082900	lipase, gastric	protein-coding	0.005000	0.393035	
mm_5983.1	chr1	58420223	58420423	-	1	NA	NA	NA	3765	NR_027853	12747	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	0.030000	0.472637	
mm_67664.1	chr7	86775766	86775966	-	1	NA	NA	NA	-2	NM_001159706	53320	Mm.269137	NM_016770	ENSMUSG00000001773	Folh1	GCP2|mopsm	folate hydrolase 1	protein-coding	0.015000	0.472637	
mm_99072.1	chr11	99171019	99171219	+	1	NA	NA	NA	-16042	NM_007719	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.015000	0.532338	
mm_122629.1	chr14	51145673	51145873	-	1	NA	NA	NA	994	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.025000	0.532338	
mm_84368.1	chr9	64841698	64841898	-	1	NA	NA	NA	30787	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.005000	0.273632	
mm_41728.1	chr5	102481602	102481802	+	1	NA	NA	NA	311	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.040000	0.636816	
mm_157015.1	chrX	7680940	7681140	-	1	NA	NA	NA	49	NM_018832	54634	Mm.67912	NM_018832	ENSMUSG00000031147	Magix	Pdzx|Sfc18	MAGI family member, X-linked	protein-coding	0.050000	0.646766	
mm_97640.1	chr11	79087017	79087217	+	1	NA	NA	NA	59237	NM_013571	16706	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb	kinase suppressor of ras 1	protein-coding	0.035000	0.567164	-86(CGCTTTATAAGG,-,0.00),-84(CTTTATAAGGCA,+,0.00)
mm_146805.1	chr18	20745797	20745997	-	1	NA	NA	NA	507	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.165000	0.771144	
mm_134124.1	chr16	10347491	10347691	-	1	NA	NA	NA	-16306	NR_126064	381033	Mm.263108	NR_126064		Gm1600	Gm1776	predicted gene 1600	ncRNA	0.035000	0.557214	
mm_157179.1	chrX	9655931	9656131	-	1	NA	NA	NA	6952	NM_025975	67117	Mm.29150	NM_025975	ENSMUSG00000031176	Dynlt3	2310075M16Rik|AU042796|Tcte1l	dynein light chain Tctex-type 3	protein-coding	0.015000	0.407960	
mm_50980.1	chr6	62108999	62109199	+	1	NA	NA	NA	-928289	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA	0.005000	0.368159	
mm_68406.1	chr7	109616482	109616682	-	1	NA	NA	NA	-14	NR_037617	76954	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.070000	0.587065	
mm_37049.1	chr4	116017759	116017959	-	1	NA	NA	NA	43	NM_010173	14073	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	0.105000	0.701493	-34(GCCTTAAAACGC,+,0.00)
mm_74511.1	chr8	8667032	8667232	-	1	NA	NA	NA	-6359	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.005000	0.293532	
mm_15490.1	chr2	157566531	157566731	+	1	NA	NA	NA	-270	NM_016916	53619	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0.055000	0.512438	
mm_77776.1	chr9	3017434	3017634	+	1	NA	NA	NA	21209	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.015000	0.358209	
mm_165694.1	chr3	93445025	93445225	+	1	NA	NA	NA	2795	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.035000	0.552239	
mm_152841.1	chr19	23448241	23448441	-	1	NA	NA	NA	-19	NM_174857	71738	Mm.50841	NM_174857	ENSMUSG00000033207	Mamdc2	1200015L10Rik|AI591564|mamcan	MAM domain containing 2	protein-coding	0.025000	0.597015	-31(GCTTTAAAATTC,+,0.00)
mm_161370.1	chr14	64455862	64456062	-	1	NA	NA	NA	-59	NM_026322	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.030000	0.507463	
mm_161071.1	chr12	76710445	76710645	-	1	NA	NA	NA	2	NM_013675	20741	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0.075000	0.611940	
mm_74231.1	chr8	124271803	124272003	+	1	NA	NA	NA	40509	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0.015000	0.532338	
mm_100489.1	chr11	120366383	120366583	+	1	NA	NA	NA	4949	NM_172802	238021	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.005000	0.547264	
mm_29206.1	chr3	106788474	106788674	-	1	NA	NA	NA	1575	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.000000	0.452736	
mm_73739.1	chr8	114133549	114133749	+	1	NA	NA	NA	75	NM_024437	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	0.055000	0.592040	
mm_53853.1	chr6	149167810	149168010	+	1	NA	NA	NA	20802	NM_001113424	232566	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0.000000	0.323383	-62(GTCTTTAAAAAT,-,0.00),-22(GTCTCTATGAGG,-,0.00),23(GACTTTAAAAAA,-,0.00),57(CTTTTTATAGCA,+,0.00)
mm_24357.1	chr3	90062709	90062909	+	1	NA	NA	NA	13	NM_028567	73545	Mm.482512	NM_028567	ENSMUSG00000027942	1700094D03Rik	-	RIKEN cDNA 1700094D03 gene	protein-coding	0.010000	0.447761	
mm_91285.1	chr10	24787672	24787872	-	1	NA	NA	NA	48423	NM_134005	209558	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	0.020000	0.462687	
mm_93605.1	chr10	117233957	117234157	-	1	NA	NA	NA	4624	NM_029906	77397	Mm.118350	NM_029906	ENSMUSG00000020177	9530003J23Rik	Lyzf1	RIKEN cDNA 9530003J23 gene	protein-coding	0.010000	0.402985	
mm_82428.1	chr9	14904629	14904829	-	1	NA	NA	NA	-778	NM_022888	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.005000	0.452736	
mm_70194.1	chr7	144449676	144449876	-	1	NA	NA	NA	-6343	NR_037302	100499519		NR_037302	ENSMUSG00000093912	Mir3470b	mmu-mir-3470b	microRNA 3470b	ncRNA	0.035000	0.641791	
mm_13891.1	chr2	120404631	120404831	+	1	NA	NA	NA	-615	NM_001110496	211499	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0.020000	0.422886	
mm_27186.1	chr3	34650617	34650817	-	1	NA	NA	NA	722	NM_011443	20674	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0.105000	0.587065	
mm_161856.1	chr18	20376692	20376892	+	1	NA	NA	NA	63	NM_181682	225256	Mm.269128	NM_181682	ENSMUSG00000061928	Dsg1b	Dsg5|dsg1-beta	desmoglein 1 beta	protein-coding	0.005000	0.442786	-61(GTTTTTAGGGTG,+,0.00)
mm_122644.1	chr14	51773487	51773687	-	1	NA	NA	NA	3	NM_177544	219033	Mm.343899	NM_177544	ENSMUSG00000060615	Ang4	Raa4|Rnase5d	angiogenin, ribonuclease A family, member 4	protein-coding	0.020000	0.512438	
mm_60878.1	chr7	46098958	46099158	+	1	NA	NA	NA	1179	NM_010602	16514	Mm.333863	NM_010602	ENSMUSG00000096146	Kcnj11	Kir6.2|mBIR	potassium inwardly rectifying channel, subfamily J, member 11	protein-coding	0.045000	0.592040	
mm_165235.1	chr2	60284131	60284331	-	1	NA	NA	NA	253	NM_025422	66205	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.085000	0.616915	
mm_59570.1	chr7	28103841	28104041	+	1	NA	NA	NA	-25525	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.015000	0.592040	
mm_124883.1	chr15	10249499	10249699	+	1	NA	NA	NA	25693	NM_001253781	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.015000	0.537313	
mm_82374.1	chr9	14615322	14615522	-	1	NA	NA	NA	-422	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.005000	0.482587	
mm_33671.1	chr4	133192003	133192203	+	1	NA	NA	NA	-3552	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.025000	0.487562	-34(GTCTTTAAAAGA,-,0.00),-33(TCTTTAAAAGAC,+,0.00)
mm_116428.1	chr13	41847454	41847654	-	1	NA	NA	NA	62	NM_001145875	109254	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.035000	0.517413	
mm_156279.1	chrX	136836957	136837157	+	1	NA	NA	NA	14311	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.010000	0.457711	
mm_122345.1	chr14	37581739	37581939	-	1	NA	NA	NA	-446517	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.000000	0.457711	31(TTTTTTATAGTG,+,0.00)
mm_70201.1	chr7	144582366	144582566	-	1	NA	NA	NA	-30	NM_010175	14082	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	0.075000	0.606965	
mm_32177.1	chr4	100776613	100776813	+	1	NA	NA	NA	34	NM_198037	320508	Mm.151962	NM_198037	ENSMUSG00000028532	Cachd1	1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573	cache domain containing 1	protein-coding	0.095000	0.636816	56(TCTTTTAAACCT,+,0.00)
mm_61659.1	chr7	80628831	80629031	+	1	NA	NA	NA	-7086	NR_040343	100504375	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	OTTMUSG00000027171	predicted gene 15880	ncRNA	0.015000	0.601990	
mm_98393.1	chr11	94214733	94214933	+	1	NA	NA	NA	3379	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.015000	0.333333	-5(TTTTTTAAAGCT,+,0.00)
mm_81502.1	chr9	110034489	110034689	+	1	NA	NA	NA	-17432	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.020000	0.492537	
mm_160063.1	chr7	5013137	5013337	-	1	NA	NA	NA	5	NM_001110330	23877	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	0.030000	0.517413	
mm_145253.1	chr18	52528555	52528755	+	1	NA	NA	NA	1066	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.090000	0.681592	
mm_9591.1	chr1	174921623	174921823	-	1	NA	NA	NA	96	NM_011825	23893	Mm.25760	NM_011825	ENSMUSG00000050069	Grem2	Gremlin2|Prdc	gremlin 2, DAN family BMP antagonist	protein-coding	0.080000	0.676617	
mm_128057.1	chr15	26402194	26402394	-	1	NA	NA	NA	93246	NM_001310774	211147	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0.005000	0.512438	
mm_41345.1	chr5	90501311	90501511	+	1	NA	NA	NA	10697	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.000000	0.288557	
mm_99634.1	chr11	105181472	105181672	+	1	NA	NA	NA	45	NM_001294329	24086	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	0.090000	0.661692	
mm_171133.1	chr3	148901421	148901621	+	1	NA	NA	NA	53114	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.000000	0.383085	-54(AACCTTAAAAGA,-,0.00),-52(CCTTAAAAGAGC,+,0.00)
mm_127536.1	chr15	102104267	102104467	+	1	NA	NA	NA	1379	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.020000	0.557214	
mm_171562.1	chr4	147230268	147230468	+	1	NA	NA	NA	54502	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.015000	0.542289	
mm_112045.1	chr12	111671986	111672186	-	1	NA	NA	NA	252	NM_021273	12709	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.095000	0.671642	
mm_88665.1	chr10	80016665	80016865	+	1	NA	NA	NA	93	NM_001142701	70719	Mm.243954	NM_027521	ENSMUSG00000035697	Hmha1	6330406L22Rik|AW539505|Ha-1	histocompatibility (minor) HA-1	protein-coding	0.025000	0.616915	
mm_82629.1	chr9	21927261	21927461	-	1	NA	NA	NA	-73	NM_001253869	235043	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0.045000	0.621891	
mm_14333.1	chr2	129592576	129592776	+	1	NA	NA	NA	-163	NM_001291020	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.040000	0.562189	
mm_149803.1	chr19	23687616	23687816	+	1	NA	NA	NA	316	NM_028208	72351	Mm.474795	NM_028208	ENSMUSG00000074925	Ptar1	1700084D09Rik|2010013L17Rik|4930428J16Rik|AI449677	protein prenyltransferase alpha subunit repeat containing 1	protein-coding	0.155000	0.746269	
mm_97587.1	chr11	78945635	78945835	+	1	NA	NA	NA	20444	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.020000	0.542289	
mm_163143.1	chr11	80504589	80504789	+	1	NA	NA	NA	4417	NR_126552	77417	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	0.005000	0.507463	-34(GAGTTTAAAAGG,-,0.00)
mm_1920.1	chr1	86026337	86026537	+	1	NA	NA	NA	4495	NM_027029	70060	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0.025000	0.522388	
mm_159982.1	chr6	113669921	113670121	+	1	NA	NA	NA	-27029	NM_001347356	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.015000	0.601990	39(AGGCTTAAAAGG,-,0.00)
mm_27163.1	chr3	33143079	33143279	-	1	NA	NA	NA	12	NM_001163516	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.185000	0.815920	
mm_164871.1	chr18	57405212	57405412	+	1	NA	NA	NA	50579	NM_028447	73137	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	0.025000	0.522388	
mm_7426.1	chr1	119837014	119837214	-	1	NA	NA	NA	-43	NM_019933	19258	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	0.175000	0.771144	
mm_50987.1	chr6	63255845	63256045	+	1	NA	NA	NA	-912	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.045000	0.557214	
mm_101782.1	chr11	45887420	45887620	-	1	NA	NA	NA	35556	NM_001045520	216705	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.035000	0.492537	
mm_144165.1	chr18	6136324	6136524	+	1	NA	NA	NA	-326	NM_001039692	75415	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0.055000	0.567164	
mm_74664.1	chr8	13594869	13595069	-	1	NA	NA	NA	-32508	NM_001080781	66501	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.035000	0.592040	
mm_35208.1	chr4	19569995	19570195	-	1	NA	NA	NA	9	NM_027769	70568	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	0.090000	0.661692	
mm_167313.1	chr8	61902657	61902857	-	1	NA	NA	NA	-63	NM_001293772	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.005000	0.477612	
mm_101077.1	chr11	11686621	11686821	-	1	NA	NA	NA	796	NM_001025597	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.035000	0.487562	55(GCCTAAAAAGGC,+,0.00)
mm_165325.1	chr2	110422006	110422206	+	1	NA	NA	NA	-59113	NM_026271	67606	Mm.291809	NM_026271	ENSMUSG00000074971	Fibin	1110018M03Rik	fin bud initiation factor homolog (zebrafish)	protein-coding	0.000000	0.378109	
mm_122114.1	chr14	31000924	31001124	-	1	NA	NA	NA	-369	NM_001165930	76485	Mm.8766	NM_029626	ENSMUSG00000021916	Glt8d1	2410004H05Rik|5430414N14Rik|AI450005	glycosyltransferase 8 domain containing 1	protein-coding	0.025000	0.502488	
mm_164330.1	chr16	9967395	9967595	-	1	NA	NA	NA	25038	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.000000	0.432836	-40(CCCCTTTAAAGT,-,0.00),-39(CCCTTTAAAGTG,+,0.00),-38(CCTTTAAAGTGC,+,0.00)
mm_15241.1	chr2	154657024	154657224	+	1	NA	NA	NA	98	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.135000	0.781095	
mm_80052.1	chr9	69314027	69314227	+	1	NA	NA	NA	24286	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.015000	0.442786	
mm_125840.1	chr15	74958571	74958771	+	1	NA	NA	NA	3565	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.025000	0.582090	
mm_105653.1	chr11	107212177	107212377	-	1	NA	NA	NA	-22896	NM_001161329	68979	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.020000	0.398010	
mm_172403.1	chr7	144939699	144939899	-	1	NA	NA	NA	126	NM_007631	12443	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.090000	0.636816	
mm_94663.1	chr11	17200163	17200363	+	1	NA	NA	NA	11326	NM_025443	66249	Mm.27831	NM_025443	ENSMUSG00000020116	Pno1	1810003N24Rik|AA407421|AU015468|AU019495|AU042323|Emi3|Imi3	partner of NOB1 homolog	protein-coding	0.005000	0.353234	
mm_47457.1	chr5	123637743	123637943	-	1	NA	NA	NA	46518	NM_019765	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.015000	0.512438	-24(CCTTCTATAAGG,-,0.00)
mm_116550.1	chr13	46696775	46696975	-	1	NA	NA	NA	27353	NM_001033192	97863	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	0.005000	0.363184	
mm_1235.1	chr1	62795459	62795659	+	1	NA	NA	NA	-827	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.020000	0.378109	
mm_113363.1	chr13	32965210	32965410	+	1	NA	NA	NA	-203	NM_011454	20708	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	0.030000	0.482587	
mm_160808.1	chr11	16508357	16508557	-	1	NA	NA	NA	27	NM_011343	20335	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0.050000	0.487562	
mm_76115.1	chr8	80788841	80789041	-	1	NA	NA	NA	-49482	NM_053124	93762	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.045000	0.562189	
mm_154139.1	chr19	57360715	57360915	-	1	NA	NA	NA	84	NR_040316	320879	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	0.105000	0.721393	
mm_87839.1	chr10	60399661	60399861	+	1	NA	NA	NA	35	NM_001164374	100302688	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.015000	0.562189	
mm_88343.1	chr10	75834953	75835153	+	1	NA	NA	NA	-172	NM_010361	14872	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.010000	0.402985	
mm_42839.1	chr5	122105790	122105990	+	1	NA	NA	NA	4910	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.000000	0.562189	
mm_9872.1	chr1	185085836	185086036	-	1	NA	NA	NA	-86387	NM_145515	226778	Mm.7445	NM_145515	ENSMUSG00000026620	Mark1	AW491150|B930025N23Rik|Emk3|Par-1c|mKIAA1477|mPar-1c	MAP/microtubule affinity regulating kinase 1	protein-coding	0.010000	0.432836	
mm_23958.1	chr3	84952077	84952277	+	1	NA	NA	NA	-34	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.025000	0.562189	
mm_105417.1	chr11	103686665	103686865	-	1	NA	NA	NA	10945	NM_019650	56494	Mm.195451	NM_019650	ENSMUSG00000020946	Gosr2	2310032N09Rik|C76855|Gs27|SNARE|membrin	golgi SNAP receptor complex member 2	protein-coding	0.020000	0.552239	
mm_160031.1	chr6	132210440	132210640	-	1	NA	NA	NA	-19	NM_198669	381833	Mm.7982	NM_198669	ENSMUSG00000067543	Prb1	BC011176|Prpg2	proline-rich protein BstNI subfamily 1	protein-coding	0.000000	0.487562	-34(CCTTATAAAGAC,+,0.00)
mm_30090.1	chr3	138186645	138186845	-	1	NA	NA	NA	-32	NM_001163386	67741	Mm.383221	NM_001163385	ENSMUSG00000012042	4930579F01Rik	-	RIKEN cDNA 4930579F01 gene	protein-coding	0.005000	0.467662	
mm_145524.1	chr18	60560716	60560916	+	1	NA	NA	NA	30	NM_025776	66810	Mm.275106	NM_025776	ENSMUSG00000024604	Rbm22	8430430L24Rik	RNA binding motif protein 22	protein-coding	0.110000	0.646766	
mm_161965.1	chr19	8819448	8819648	+	1	NA	NA	NA	147	NM_001081196	68693	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0.040000	0.537313	
mm_151880.1	chr19	5798411	5798611	-	1	NA	NA	NA	-2530	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.005000	0.278607	
mm_88515.1	chr10	78049788	78049988	+	1	NA	NA	NA	46	NM_019448	54427	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.030000	0.597015	
mm_171605.1	chr4	149142496	149142696	-	1	NA	NA	NA	-4996	NM_027263	69928	Mm.260893	NM_027263	ENSMUSG00000073705	Apitd1	2610040C18Rik|2810407L01Rik|CENP-S	apoptosis-inducing, TAF9-like domain 1	protein-coding	0.015000	0.611940	
mm_33566.1	chr4	131923329	131923529	+	1	NA	NA	NA	1658	NM_001201367	623230	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.010000	0.378109	-49(ACTTTAAAAGTG,+,0.00)
mm_165538.1	chr2	180589677	180589877	+	1	NA	NA	NA	370	NM_031373	72075	Mm.250418	NM_031373	ENSMUSG00000049401	Ogfr	2010013E17Rik	opioid growth factor receptor	protein-coding	0.070000	0.701493	
mm_157458.1	chrX	43428939	43429139	-	1	NA	NA	NA	-154255	NM_011855	23963	Mm.327698	NM_011855	ENSMUSG00000016150	Tenm1	Odz1|Odz2|TCAP-1|Ten-m1|ten-1	teneurin transmembrane protein 1	protein-coding	0.055000	0.537313	
mm_16058.1	chr2	167778063	167778263	+	1	NA	NA	NA	86986	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.040000	0.527363	
mm_148519.1	chr19	4295526	4295726	+	1	NA	NA	NA	10596	NM_130863	110355	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.010000	0.517413	
mm_122025.1	chr14	28969371	28969571	-	1	NA	NA	NA	-48737	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding	0.005000	0.437811	
mm_24068.1	chr3	87919394	87919594	+	1	NA	NA	NA	-50	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.060000	0.502488	
mm_161274.1	chr14	11125577	11125777	-	1	NA	NA	NA	36358	NM_010210	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.005000	0.432836	
mm_120284.1	chr14	63133207	63133407	+	1	NA	NA	NA	10845	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.532338	
mm_108699.1	chr12	86948782	86948982	+	1	NA	NA	NA	1539	NM_001289432	217732	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.020000	0.472637	-33(AGCTATAAAAGG,-,0.00)
mm_159497.1	chr4	43584230	43584430	-	1	NA	NA	NA	164	NM_001099314	100039672	Mm.415110	NM_001099314	ENSMUSG00000078719	Msmp	OTTMUSG00000007017|Psmp	microseminoprotein, prostate associated	protein-coding	0.015000	0.567164	-93(CACTTTATAAAC,-,0.00)
mm_70548.1	chr8	13055883	13056083	+	1	NA	NA	NA	-4925	NM_025834	66901	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.015000	0.532338	
mm_36242.1	chr4	63172029	63172229	-	1	NA	NA	NA	2	NM_010616	16552	Mm.216057	NM_010616	ENSMUSG00000028357	Kif12	-	kinesin family member 12	protein-coding	0.000000	0.517413	
mm_105407.1	chr11	103504861	103505061	-	1	NA	NA	NA	-92297	NM_183034	353047	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.040000	0.522388	
mm_110488.1	chr12	51993993	51994193	-	1	NA	NA	NA	12414	NM_029545	328092	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	0.000000	0.552239	
mm_44764.1	chr5	31647115	31647315	-	1	NA	NA	NA	20125	NR_105859	102466677		NR_105859	ENSMUSG00000099301	Mir3473e	Gm27422|mmu-mir-3473e	microRNA 3473e	ncRNA	0.015000	0.502488	
mm_82243.1	chr9	4472119	4472319	-	1	NA	NA	NA	88682	NM_145609	78100	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	0.015000	0.343284	
mm_51581.1	chr6	83775545	83775745	+	1	NA	NA	NA	167	NM_009357	21766	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	0.105000	0.691542	
mm_50015.1	chr6	41113432	41113632	+	1	NA	NA	NA	-78023	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.507463	
mm_95022.1	chr11	32001688	32001888	+	1	NA	NA	NA	511	NM_001290681	18197	Mm.3304	NM_008741	ENSMUSG00000020297	Nsg2	-	neuron specific gene family member 2	protein-coding	0.030000	0.552239	
mm_53520.1	chr6	136500974	136501174	+	1	NA	NA	NA	-17777	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.010000	0.417910	
mm_70083.1	chr7	142653948	142654148	-	1	NA	NA	NA	948	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.045000	0.611940	
mm_36475.1	chr4	82850602	82850802	-	1	NA	NA	NA	8959	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0.015000	0.522388	
mm_130127.1	chr15	89841830	89842030	-	1	NA	NA	NA	-70	NM_018803	54526	Mm.261601	NM_018803	ENSMUSG00000063260	Syt10	-	synaptotagmin X	protein-coding	0.165000	0.796020	
mm_76959.1	chr8	106059138	106059338	-	1	NA	NA	NA	-365	NM_010901	18021	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.040000	0.507463	
mm_45299.1	chr5	65335487	65335687	-	1	NA	NA	NA	52	NM_011258	19687	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0.140000	0.696517	
mm_98073.1	chr11	86212006	86212206	+	1	NA	NA	NA	10746	NR_130958	74038	Mm.171304	NR_130958	ENSMUSG00000085208	Brip1os	4632419I22Rik	BRCA1 interacting protein C-terminal helicase 1, opposite strand	ncRNA	0.000000	0.398010	-6(TTTTTTAAAGCC,+,0.00)
mm_149917.1	chr19	26606673	26606873	+	1	NA	NA	NA	1613	NM_011416	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.075000	0.691542	
mm_143399.1	chr17	70753182	70753382	-	1	NA	NA	NA	93495	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.005000	0.507463	
mm_155013.1	chrX	41414854	41415054	+	1	NA	NA	NA	13425	NM_001290451	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding	0.005000	0.358209	
mm_4911.1	chr1	190170986	190171186	+	1	NA	NA	NA	-406	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding	0.070000	0.537313	
mm_166944.1	chr7	43544328	43544528	-	1	NA	NA	NA	-11257	NM_021293	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.020000	0.542289	
mm_66454.1	chr7	44869678	44869878	-	1	NA	NA	NA	10	NM_133949	84113	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0.065000	0.651741	
mm_122128.1	chr14	31159955	31160155	-	1	NA	NA	NA	8586	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.020000	0.522388	
mm_100637.1	chr11	121718489	121718689	+	1	NA	NA	NA	16162	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.000000	0.522388	
mm_93833.1	chr10	121586667	121586867	-	1	NA	NA	NA	27	NM_019786	56480	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.160000	0.776119	
mm_171027.1	chr2	87906281	87906481	+	1	NA	NA	NA	-2707	NM_146647	258641	Mm.377608	NM_146647	ENSMUSG00000075146	Olfr1154	MOR173-2	olfactory receptor 1154	protein-coding	0.040000	0.402985	
mm_144106.1	chr18	4165744	4165944	+	1	NA	NA	NA	12	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.010000	0.472637	
mm_66639.1	chr7	45575058	45575258	-	1	NA	NA	NA	18	NR_038166	71661	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0.030000	0.552239	
mm_47084.1	chr5	117115891	117116091	-	1	NA	NA	NA	2	NM_001122666	71954	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	0.140000	0.751244	
mm_46340.1	chr5	101851447	101851647	-	1	NA	NA	NA	86417	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.000000	0.487562	
mm_135493.1	chr16	46120101	46120301	-	1	NA	NA	NA	47	NM_032465	84544	Mm.29204	NM_032465	ENSMUSG00000022657	Cd96	1700109I12Rik|Tactile	CD96 antigen	protein-coding	0.025000	0.482587	
mm_152973.1	chr19	29386856	29387056	-	1	NA	NA	NA	19518	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.313433	
mm_81187.1	chr9	107539449	107539649	+	1	NA	NA	NA	2316	NM_019720	56368	Mm.24833	NM_019720	ENSMUSG00000037190	Cyb561d2	AW049681|Tsp10	cytochrome b-561 domain containing 2	protein-coding	0.010000	0.452736	
mm_52748.1	chr6	120605622	120605822	+	1	NA	NA	NA	50926	NR_045733	73505	Mm.416867	NR_045733		1700072O05Rik	-	RIKEN cDNA 1700072O05 gene	ncRNA	0.010000	0.477612	
mm_995.1	chr1	58713111	58713311	+	1	NA	NA	NA	-75	NM_009805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.025000	0.462687	
mm_139536.1	chr17	56709856	56710056	+	1	NA	NA	NA	6965	NM_178926	106639	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0.010000	0.606965	
mm_55255.1	chr6	52961631	52961831	-	1	NA	NA	NA	-52111	NM_001168277	231986	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.010000	0.512438	
mm_62065.1	chr7	92561411	92561611	+	1	NA	NA	NA	362	NM_001162918	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.075000	0.582090	
mm_47502.1	chr5	124034524	124034724	-	1	NA	NA	NA	-2364	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.030000	0.487562	-71(GTTTTTAGAGTA,+,0.00)
mm_28163.1	chr3	87832216	87832416	-	1	NA	NA	NA	-14439	NM_001025571	27371	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	0.005000	0.442786	
mm_25305.1	chr3	105986059	105986259	+	1	NA	NA	NA	12357	NM_007696	12659	Mm.431947	NM_007696	ENSMUSG00000074340	Ovgp1	120kDa|AU016433|AU019448|Chit5|MOGP|OGP|muc9	oviductal glycoprotein 1	protein-coding	0.010000	0.457711	
mm_115115.1	chr13	104157078	104157278	+	1	NA	NA	NA	21288	NM_025879	66975	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	0.025000	0.467662	
mm_22788.1	chr3	22081668	22081868	+	1	NA	NA	NA	5116	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.030000	0.497512	
mm_19600.1	chr2	102400817	102401017	-	1	NA	NA	NA	-17	NM_020267	80985	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	0.190000	0.815920	
mm_170208.1	chr17	70625859	70626059	-	1	NA	NA	NA	64212	NM_001128181	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.010000	0.477612	51(CACCCTAAAAAC,-,0.00)
mm_29925.1	chr3	131490901	131491101	-	1	NA	NA	NA	-73767	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.025000	0.502488	
mm_112016.1	chr12	111377370	111377570	-	1	NA	NA	NA	248	NM_183016	217866	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0.165000	0.786070	
mm_88885.1	chr10	81135378	81135578	+	1	NA	NA	NA	-793	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.085000	0.656716	
mm_21296.1	chr2	157017433	157017633	-	1	NA	NA	NA	-10458	NM_025853	66934	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0.015000	0.512438	
mm_39703.1	chr5	27261956	27262156	+	1	NA	NA	NA	121	NM_001136060	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.035000	0.557214	63(GCATTTAAAGAG,+,0.00)
mm_9782.1	chr1	181211856	181212056	-	1	NA	NA	NA	22	NM_145514	226757	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.105000	0.701493	
mm_4513.1	chr1	174215330	174215530	+	1	NA	NA	NA	35546	NM_146715	258710	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding	0.025000	0.512438	
mm_39937.1	chr5	31699090	31699290	+	1	NA	NA	NA	1140	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.015000	0.383085	
mm_163563.1	chr13	25688306	25688506	+	1	NA	NA	NA	277910	NR_045062	100503530	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	OTTMUSG00000000620	predicted gene 11351	ncRNA	0.005000	0.373134	
mm_10510.1	chr2	16356205	16356405	+	1	NA	NA	NA	1	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.075000	0.686567	
mm_154025.1	chr19	53390506	53390706	-	1	NA	NA	NA	-33	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	0.110000	0.651741	
mm_118285.1	chr13	112800483	112800683	-	1	NA	NA	NA	-194	NM_008903	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.020000	0.542289	-33(TTCCTTTAAAGG,-,0.00),-32(TCCTTTAAAGGA,+,0.00),-32(TCCTTTAAAGGA,-,0.00),-31(CCTTTAAAGGAG,+,0.00)
mm_127279.1	chr15	99875493	99875693	+	1	NA	NA	NA	-137	NM_001113545	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.085000	0.626866	
mm_75276.1	chr8	40904384	40904584	-	1	NA	NA	NA	-21749	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.030000	0.497512	-65(AGGCATAAAAGC,-,0.00)
mm_119161.1	chr14	31671779	31671979	+	1	NA	NA	NA	30822	NM_025295	26363	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0.005000	0.462687	
mm_109113.1	chr12	105475806	105476006	+	1	NA	NA	NA	22050	NM_001252508	268595	Mm.2388	NM_001252508	ENSMUSG00000094910	D430019H16Rik	AI852661	RIKEN cDNA D430019H16 gene	protein-coding	0.015000	0.432836	87(GTCTTTAAAGAG,+,0.00),87(GTCTTTAAAGAG,-,0.00)
mm_149098.1	chr19	8941749	8941949	+	1	NA	NA	NA	-71	NM_011842	23942	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	0.105000	0.651741	
mm_108512.1	chr12	83993159	83993359	+	1	NA	NA	NA	5398	NM_134188	171210	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	0.015000	0.373134	
mm_17988.1	chr2	37914567	37914767	-	1	NA	NA	NA	138418	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.005000	0.422886	
mm_172338.1	chr7	110134155	110134355	+	1	NA	NA	NA	12196	NM_009516	22390	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.005000	0.462687	
mm_62053.1	chr7	92447337	92447537	+	1	NA	NA	NA	-113712	NM_025515	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.005000	0.452736	
mm_59046.1	chr7	19359649	19359849	+	1	NA	NA	NA	-266	NM_145822	70333	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	0.035000	0.467662	-34(CCGTCTTAAAGG,-,0.00),-31(TCTTAAAGGGGC,+,0.00),0(GGCTTTTAAAGA,-,0.00),1(GCTTTTAAAGAG,+,0.00),75(TACTTTTAAAGC,-,0.00),76(ACTTTTAAAGCT,+,0.00)
mm_161797.1	chr17	50292850	50293050	-	1	NA	NA	NA	670	NM_010021	13164	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	0.140000	0.786070	
mm_9128.1	chr1	170644234	170644434	-	1	NA	NA	NA	-198	NM_177068	320078	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.090000	0.651741	
mm_169532.1	chr14	92602965	92603165	-	1	NA	NA	NA	1285823	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.015000	0.517413	
mm_156932.1	chrX	169685121	169685321	+	1	NA	NA	NA	22	NM_001290512	17318	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	0.025000	0.512438	
mm_17356.1	chr2	26617355	26617555	-	1	NA	NA	NA	-11002	NM_019833	56279	Mm.279863	NM_019833	ENSMUSG00000036186	Fam69b	AB030186|AW209000|B230317C12Rik|PIP49	family with sequence similarity 69, member B	protein-coding	0.015000	0.487562	
mm_4196.1	chr1	171225660	171225860	+	1	NA	NA	NA	706	NM_013474	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.010000	0.507463	
mm_142000.1	chr17	35199298	35199498	-	1	NA	NA	NA	2609	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.040000	0.487562	
mm_66850.1	chr7	50575839	50576039	-	1	NA	NA	NA	-55	NR_045928	73515	Mm.437440	NR_045928	ENSMUSG00000085265	Nell1os	1700081H22Rik	NEL-like 1, opposite strand	ncRNA	0.015000	0.522388	
mm_75888.1	chr8	70863657	70863857	-	1	NA	NA	NA	-6749	NM_032397	84036	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	0.010000	0.582090	
mm_146676.1	chr18	12819671	12819871	-	1	NA	NA	NA	136	NR_045524	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.030000	0.497512	
mm_106524.1	chr11	120563219	120563419	-	1	NA	NA	NA	9617	NM_011032	18453	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.035000	0.477612	
mm_77231.1	chr8	115704201	115704401	-	1	NA	NA	NA	2593	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.005000	0.273632	
mm_78141.1	chr9	20944930	20945130	+	1	NA	NA	NA	7593	NM_001199433	13433	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0.005000	0.522388	
mm_121171.1	chr14	103017259	103017459	+	1	NA	NA	NA	16444	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.005000	0.457711	73(GGCTCTTTGAGG,-,0.00)
mm_149935.1	chr19	27216786	27216986	+	1	NA	NA	NA	-134	NM_013703	22359	Mm.4141	NM_013703	ENSMUSG00000024924	Vldlr	AA408956|AI451093|AW047288	very low density lipoprotein receptor	protein-coding	0.065000	0.641791	
mm_94777.1	chr11	21283308	21283508	+	1	NA	NA	NA	44376	NM_001290628	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.000000	0.393035	
mm_162890.1	chr10	109642354	109642554	+	1	NA	NA	NA	357765	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.005000	0.343284	
mm_150930.1	chr19	46304735	46304935	+	1	NA	NA	NA	98	NM_001177369	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.060000	0.636816	
mm_106945.1	chr12	8771223	8771423	+	1	NA	NA	NA	-73	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.060000	0.696517	
mm_15219.1	chr2	154426980	154427180	+	1	NA	NA	NA	-9404	NM_172860	12396	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	0.015000	0.368159	
mm_170095.1	chr17	38759292	38759492	-	1	NA	NA	NA	119945	NM_001177586	100126768	Mm.471528	NM_001177586	ENSMUSG00000092342	Esp31	Gm20516	exocrine gland secreted peptide 31	protein-coding	0.010000	0.388060	58(GTTTTAAAAGTC,+,0.00)
mm_64230.1	chr7	141692523	141692723	+	1	NA	NA	NA	2283	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.020000	0.577114	
mm_154252.1	chr19	60766643	60766843	-	1	NA	NA	NA	7642	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.050000	0.542289	
mm_168439.1	chr1	136698533	136698733	+	1	NA	NA	NA	2422	NR_037986	100503474	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0.025000	0.517413	
mm_33123.1	chr4	124802466	124802666	+	1	NA	NA	NA	17	NM_008636	17764	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	0.065000	0.656716	
mm_87181.1	chr10	39133958	39134158	+	1	NA	NA	NA	35	NM_028006	71924	Mm.297956	NM_028006	ENSMUSG00000019845	Tube1	2310061K05Rik|AI551343|Tube	epsilon-tubulin 1	protein-coding	0.105000	0.656716	
mm_121323.1	chr14	113314940	113315140	+	1	NA	NA	NA	1293610	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA	0.040000	0.477612	-74(GGCTCTAAAAGA,-,0.00)
mm_58663.1	chr7	6734030	6734230	+	1	NA	NA	NA	3547	NM_001290994	57775	Mm.40752	NM_021323	ENSMUSG00000051527	Usp29	Ocat	ubiquitin specific peptidase 29	protein-coding	0.015000	0.417910	
mm_161547.1	chr16	8738361	8738561	-	1	NA	NA	NA	-119	NM_001003918	252870	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.225000	0.850746	
mm_57202.1	chr6	122850707	122850907	-	1	NA	NA	NA	5350	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.040000	0.447761	
mm_167172.1	chr7	139224755	139224955	-	1	NA	NA	NA	-11548	NM_001162540	57740	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	0.030000	0.502488	
mm_164013.1	chr14	70599464	70599664	-	1	NA	NA	NA	271	NM_194345	239170	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	0.105000	0.676617	
mm_11463.1	chr2	32237219	32237419	+	1	NA	NA	NA	636	NM_145145	99011	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0.045000	0.497512	
mm_10894.1	chr2	25264180	25264380	+	1	NA	NA	NA	1682	NM_175286	97031	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0.005000	0.552239	
mm_52660.1	chr6	117900230	117900430	+	1	NA	NA	NA	-10	NM_001166432	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.025000	0.517413	
mm_14245.1	chr2	128055097	128055297	+	1	NA	NA	NA	-70841	NM_207681	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.015000	0.497512	
mm_118797.1	chr14	24490617	24490817	+	1	NA	NA	NA	36	NM_011297	20088	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	0.080000	0.611940	
mm_71813.1	chr8	68884319	68884519	+	1	NA	NA	NA	3864	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.393035	
mm_125671.1	chr15	66152606	66152806	+	1	NA	NA	NA	133518	NM_152923	110862	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	0.005000	0.512438	
mm_33658.1	chr4	133130462	133130662	+	1	NA	NA	NA	-71	NM_153423	242687	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.100000	0.696517	
mm_103148.1	chr11	70322408	70322608	-	1	NA	NA	NA	10	NM_145684	11685	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	0.025000	0.547264	
mm_154877.1	chrX	20692786	20692986	+	1	NA	NA	NA	4460	NM_011049	18555	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	0.005000	0.567164	
mm_151517.1	chr19	58738177	58738377	+	1	NA	NA	NA	9390	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.015000	0.497512	
mm_13027.1	chr2	91053932	91054132	+	1	NA	NA	NA	16	NM_008948	19182	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	0.115000	0.696517	
mm_168866.1	chr12	33147584	33147784	+	1	NA	NA	NA	-2	NM_028139	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.130000	0.721393	
mm_4965.1	chr1	191275856	191276056	+	1	NA	NA	NA	42162	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.020000	0.482587	
mm_130594.1	chr15	99706747	99706947	-	1	NA	NA	NA	4560	NM_031842	83797	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.035000	0.402985	
mm_60676.1	chr7	45077415	45077615	+	1	NA	NA	NA	14698	NM_026555	52377	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0.035000	0.611940	
mm_59307.1	chr7	25268347	25268547	+	1	NA	NA	NA	748	NM_001302811	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.080000	0.651741	
mm_162795.1	chr10	76442160	76442360	-	1	NA	NA	NA	652	NM_008787	18541	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	0.040000	0.517413	39(GGCTTTTTAAAG,-,0.00),41(CTTTTTAAAGAC,+,0.00)
mm_150685.1	chr19	42090424	42090624	+	1	NA	NA	NA	89	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	0.150000	0.751244	
mm_83372.1	chr9	44510086	44510286	-	1	NA	NA	NA	11050	NM_030256	80288	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.050000	0.592040	
mm_2850.1	chr1	131672170	131672370	+	1	NA	NA	NA	-16425	NM_145509	226421	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0.015000	0.557214	
mm_74842.1	chr8	24438845	24439045	-	1	NA	NA	NA	1	NM_026931	69068	Mm.25775	NM_026931	ENSMUSG00000056313	1810011O10Rik	1110065B09Rik|AW121743|AW321058	RIKEN cDNA 1810011O10 gene	protein-coding	0.040000	0.517413	-34(CCCTTTAAATAG,+,0.00),-34(CCCTTTAAATAG,-,0.00),-32(CTTTAAATAGCC,+,0.00)
mm_95911.1	chr11	58206844	58207044	+	1	NA	NA	NA	7388	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.015000	0.552239	
mm_1345.1	chr1	66290001	66290201	+	1	NA	NA	NA	-31623	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.000000	0.318408	-91(CCATTAATAGTA,+,0.00),-59(GCCTATAAATAC,-,0.00)
mm_166680.1	chr6	98697596	98697796	-	1	NA	NA	NA	330602	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.005000	0.482587	
mm_20037.1	chr2	119897039	119897239	-	1	NA	NA	NA	-89	NM_001164274	29808	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	0.095000	0.641791	
mm_148556.1	chr19	4721013	4721213	+	1	NA	NA	NA	9890	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	0.020000	0.616915	
mm_2199.1	chr1	89463808	89464008	+	1	NA	NA	NA	9097	NM_001037136	347722	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.005000	0.412935	
mm_80972.1	chr9	103111983	103112183	+	1	NA	NA	NA	9	NM_173781	270192	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.080000	0.746269	
mm_148301.1	chr18	82787508	82787708	-	1	NA	NA	NA	-28569	NR_045389	76961	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.015000	0.587065	
mm_126220.1	chr15	78914288	78914488	+	1	NA	NA	NA	469	NM_020271	57028	Mm.263169	NM_020271	ENSMUSG00000022436	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	0.160000	0.741294	
mm_120466.1	chr14	65971659	65971859	+	1	NA	NA	NA	3276	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.010000	0.562189	
mm_140051.1	chr17	74528350	74528550	+	1	NA	NA	NA	155	NM_007566	12211	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.090000	0.691542	
mm_34863.1	chr4	155555069	155555269	+	1	NA	NA	NA	-7223	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.010000	0.517413	
mm_122504.1	chr14	46822097	46822297	-	1	NA	NA	NA	45	NM_022023	63985	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	0.115000	0.651741	38(TCTTAAAGGGGC,+,0.00)
mm_104921.1	chr11	99851530	99851730	-	1	NA	NA	NA	-25	NM_001013823	435285	Mm.351895	NM_001013823	ENSMUSG00000046474	Krtap4-16	OTTMUSG00000002196	keratin associated protein 4-16	protein-coding	0.000000	0.412935	-33(GGGTATAAAAGA,-,0.00)
mm_2844.1	chr1	131638296	131638496	+	1	NA	NA	NA	82	NM_007799	13034	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	0.030000	0.492537	
mm_39738.1	chr5	29378506	29378706	+	1	NA	NA	NA	-216	NM_020295	56873	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0.050000	0.601990	-83(GGGTTTTTAGGG,-,0.00),-81(GTTTTTAGGGTC,+,0.00)
mm_166278.1	chr5	91770088	91770288	+	1	NA	NA	NA	-2888	NR_045383	73452	Mm.396233	NR_045383	ENSMUSG00000101978	1700063O14Rik	-	RIKEN cDNA 1700063O14 gene	ncRNA	0.005000	0.547264	
mm_98613.1	chr11	95843050	95843250	+	1	NA	NA	NA	-95	NM_001284397	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.005000	0.517413	
mm_110002.1	chr12	15816642	15816842	-	1	NA	NA	NA	43	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.105000	0.582090	
mm_169349.1	chr14	20640693	20640893	-	1	NA	NA	NA	15747	NM_021508	59011	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0.105000	0.736318	
mm_147425.1	chr18	46212717	46212917	-	1	NA	NA	NA	-210	NM_178872	28105	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.040000	0.522388	4(GGCTCTTAGAGC,-,0.00),5(GCTCTTAGAGCC,+,0.00)
mm_121968.1	chr14	25517257	25517457	-	1	NA	NA	NA	-17082	NR_037236	100526533		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.015000	0.582090	
mm_36806.1	chr4	103173405	103173605	-	1	NA	NA	NA	41379	NM_177732	242585	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.000000	0.383085	
mm_32979.1	chr4	120134559	120134759	+	1	NA	NA	NA	-26547	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.005000	0.497512	
mm_19971.1	chr2	118012280	118012480	-	1	NA	NA	NA	98822	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA	0.015000	0.492537	
mm_136317.1	chr16	91729287	91729487	-	1	NA	NA	NA	16	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.115000	0.736318	
mm_32536.1	chr4	109000896	109001096	+	1	NA	NA	NA	191	NM_146150	230598	Mm.274950	NM_146150	ENSMUSG00000053510	Nrd1	2600011I06Rik|AI875733|NRD-C|Nrdc	nardilysin, N-arginine dibasic convertase, NRD convertase 1	protein-coding	0.075000	0.611940	
mm_4762.1	chr1	182452613	182452813	+	1	NA	NA	NA	43546	NM_173378	209456	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.020000	0.462687	-67(CCTTTACAGGGC,+,0.00)
mm_57466.1	chr6	125217237	125217437	-	1	NA	NA	NA	1756	NM_001080557	22317	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	0.020000	0.407960	78(CCACTTAAAGGG,+,0.00)
mm_42076.1	chr5	110135755	110135955	+	1	NA	NA	NA	25	NM_001289580	231600	Mm.30264	NM_172717	ENSMUSG00000014668	Chfr	5730484M20Rik|C230082M18|RNF116	checkpoint with forkhead and ring finger domains	protein-coding	0.105000	0.696517	
mm_12334.1	chr2	69669751	69669951	+	1	NA	NA	NA	-269	NM_001081087	228003	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	0.010000	0.417910	
mm_17300.1	chr2	26294512	26294712	-	1	NA	NA	NA	-55	NM_177841	329366	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding	0.005000	0.522388	
mm_100448.1	chr11	119602908	119603108	+	1	NA	NA	NA	103	NM_028898	74370	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	0.055000	0.562189	
mm_99213.1	chr11	101024538	101024738	+	1	NA	NA	NA	-5702	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.020000	0.502488	
mm_162373.1	chr1	67226475	67226675	+	1	NA	NA	NA	103548	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.000000	0.388060	
mm_147331.1	chr18	42867877	42868077	-	1	NA	NA	NA	31529	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.010000	0.323383	
mm_96408.1	chr11	67253902	67254102	+	1	NA	NA	NA	16190	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.015000	0.502488	
mm_171151.1	chr3	16059173	16059373	+	1	NA	NA	NA	-52941	NM_001081687	381484	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0.025000	0.487562	
mm_101172.1	chr11	16983955	16984155	-	1	NA	NA	NA	24663	NM_019549	56193	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.015000	0.497512	1(CCCTTTAGGGTC,+,0.00)
mm_124003.1	chr14	76010524	76010724	-	1	NA	NA	NA	241	NM_026816	68705	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	0.095000	0.616915	
mm_111608.1	chr12	102399888	102400088	-	1	NA	NA	NA	39825	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.005000	0.532338	
mm_102349.1	chr11	58171901	58172101	-	1	NA	NA	NA	347	NM_175001	216767	Mm.259907	NM_175001	ENSMUSG00000020514	Mrpl22	E030011D16Rik|HSPC158|MRP-L25|Rpml25	mitochondrial ribosomal protein L22	protein-coding	0.050000	0.542289	
mm_158637.1	chrX	155214781	155214981	-	1	NA	NA	NA	1568	NM_009121	20229	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	0.010000	0.348259	
mm_113276.1	chr13	29756938	29757138	+	1	NA	NA	NA	98635	NR_131896	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0.015000	0.477612	
mm_75094.1	chr8	34097232	34097432	-	1	NA	NA	NA	10482	NM_001293758	22428	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.050000	0.611940	
mm_120657.1	chr14	70534315	70534515	+	1	NA	NA	NA	3594	NM_145219	213469	Mm.41708	NM_145219	ENSMUSG00000033595	Lgi3	AI841179|AW049851	leucine-rich repeat LGI family, member 3	protein-coding	0.045000	0.621891	
mm_34517.1	chr4	148940974	148941174	+	1	NA	NA	NA	136682	NM_027195	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.035000	0.611940	
mm_22047.1	chr2	168230997	168231197	-	1	NA	NA	NA	475	NM_001160330	69372	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	0.165000	0.751244	
mm_40379.1	chr5	52368463	52368663	+	1	NA	NA	NA	4759	NM_011435	20657	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	0.105000	0.711443	
mm_2018.1	chr1	87127910	87128110	+	1	NA	NA	NA	3002	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.010000	0.577114	
mm_2868.1	chr1	131750284	131750484	+	1	NA	NA	NA	6362	NM_177243	320718	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	0.035000	0.562189	
mm_68821.1	chr7	126108414	126108614	-	1	NA	NA	NA	-26103	NM_001101488	269994	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.025000	0.592040	
mm_16382.1	chr2	178327508	178327708	+	1	NA	NA	NA	80050	NM_177191	320558	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding	0.005000	0.606965	
mm_101010.1	chr11	8503798	8503998	-	1	NA	NA	NA	160637	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.030000	0.552239	
mm_165798.1	chr3	141465165	141465365	+	1	NA	NA	NA	-299	NM_009472	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.120000	0.746269	
mm_161234.1	chr13	93304241	93304441	+	1	NA	NA	NA	584	NM_011982	26556	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0.135000	0.746269	
mm_6380.1	chr1	72700471	72700671	-	1	NA	NA	NA	-7	NM_176980	319695	Mm.249056	NM_176980	ENSMUSG00000039342	Ankar	4932422E22Rik	ankyrin and armadillo repeat containing	protein-coding	0.040000	0.547264	
mm_45068.1	chr5	43782015	43782215	-	1	NA	NA	NA	34	NM_001159963	242960	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0.185000	0.800995	
mm_171769.1	chr5	108087846	108088046	+	1	NA	NA	NA	9781	NM_001253878	17765	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0.005000	0.353234	
mm_152558.1	chr19	11485623	11485823	-	1	NA	NA	NA	-6315	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.005000	0.353234	
mm_163817.1	chr14	19416392	19416592	-	1	NA	NA	NA	186095	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.015000	0.328358	
mm_96198.1	chr11	62005690	62005890	+	1	NA	NA	NA	49027	NM_001310526	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.005000	0.452736	
mm_92287.1	chr10	71344738	71344938	-	1	NA	NA	NA	11	NM_134007	52637	Mm.254114	NM_134007	ENSMUSG00000037710	Cisd1	AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding	0.135000	0.736318	
mm_160446.1	chr8	104541274	104541474	+	1	NA	NA	NA	65	NM_001301165	12354	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	0.080000	0.636816	
mm_19302.1	chr2	90479052	90479252	-	1	NA	NA	NA	22	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.020000	0.447761	
mm_18912.1	chr2	76736048	76736248	-	1	NA	NA	NA	60833	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.467662	
mm_10837.1	chr2	24925254	24925454	+	1	NA	NA	NA	-5745	NM_001109686	77683	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	0.015000	0.542289	
mm_5389.1	chr1	31222512	31222712	-	1	NA	NA	NA	44	NR_033445	70988	Mm.161414	NM_027637	ENSMUSG00000086727	4931428L18Rik	4930563O14Rik	RIKEN cDNA 4931428L18 gene	ncRNA	0.030000	0.542289	
mm_94282.1	chr11	3983568	3983768	+	1	NA	NA	NA	32	NM_016922	53897	Mm.103414	NM_016922	ENSMUSG00000049721	Gal3st1	Cst|Gcst	galactose-3-O-sulfotransferase 1	protein-coding	0.105000	0.796020	
mm_7844.1	chr1	132360228	132360428	-	1	NA	NA	NA	7620	NM_001311108	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.010000	0.582090	
mm_139430.1	chr17	53567199	53567399	+	1	NA	NA	NA	328	NM_020005	18519	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.135000	0.830846	
mm_156924.1	chrX	169258567	169258767	+	1	NA	NA	NA	61705	NM_001331050	15159	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	0.010000	0.343284	-100(GCTTTTAAATGG,+,0.00),-100(GCTTTTAAATGG,-,0.00)
mm_156631.1	chrX	155622589	155622789	+	1	NA	NA	NA	638	NM_001093750	211612	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	0.065000	0.616915	
mm_147713.1	chr18	60812381	60812581	-	1	NA	NA	NA	405	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.005000	0.562189	
mm_57179.1	chr6	122848335	122848535	-	1	NA	NA	NA	7722	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.000000	0.412935	
mm_36750.1	chr4	101182679	101182879	-	1	NA	NA	NA	82503	NM_146145	16451	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.025000	0.472637	
mm_57105.1	chr6	122591379	122591579	-	1	NA	NA	NA	10965	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.010000	0.442786	
mm_38053.1	chr4	134004029	134004229	-	1	NA	NA	NA	-3265	NM_026144	67422	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	0.010000	0.477612	
mm_15336.1	chr2	155974201	155974401	+	1	NA	NA	NA	17743	NM_177217	16328	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	0.025000	0.567164	
mm_86755.1	chr10	19607172	19607372	+	1	NA	NA	NA	-14756	NM_178258	237310	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	0.015000	0.388060	
mm_152258.1	chr19	8786158	8786358	-	1	NA	NA	NA	58	NM_146092	225895	Mm.220886	NM_146092	ENSMUSG00000003680	Taf6l	2810417N14Rik|BB223262|C530024J06Rik|Paf65a	TATA-box binding protein associated factor 6 like	protein-coding	0.080000	0.671642	
mm_52205.1	chr6	100834007	100834207	+	1	NA	NA	NA	469	NM_182939	232314	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	0.115000	0.721393	
mm_77435.1	chr8	121570364	121570564	-	1	NA	NA	NA	8342	NM_133765	76454	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0.045000	0.577114	
mm_114224.1	chr13	56441373	56441573	+	1	NA	NA	NA	3118	NM_177809	328258	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	0.000000	0.343284	
mm_77608.1	chr8	123893198	123893398	-	1	NA	NA	NA	1477	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.030000	0.552239	
mm_142032.1	chr17	35235686	35235886	-	1	NA	NA	NA	29	NM_010909	18038	Mm.300795	NM_010909	ENSMUSG00000042419	Nfkbil1	Def-7|IKBL	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1	protein-coding	0.070000	0.641791	
mm_107381.1	chr12	33146875	33147075	+	1	NA	NA	NA	611	NR_015602	320046	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	0.045000	0.582090	
mm_92673.1	chr10	80546565	80546765	-	1	NA	NA	NA	-7541	NM_026094	67331	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0.060000	0.681592	
mm_122580.1	chr14	50835574	50835774	-	1	NA	NA	NA	27728	NM_009632	11546	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0.000000	0.303483	
mm_10576.1	chr2	18073841	18074041	+	1	NA	NA	NA	9356	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.015000	0.422886	7(TCTTTTATATAC,+,0.00)
mm_79696.1	chr9	60837490	60837690	+	1	NA	NA	NA	43042	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.020000	0.487562	
mm_147561.1	chr18	54988746	54988946	-	1	NA	NA	NA	1334	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.010000	0.442786	-33(GCTTTTCAAGTC,+,0.00),70(CAGTATTAATGG,-,0.00)
mm_85975.1	chr9	112164203	112164403	-	1	NA	NA	NA	21646	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.000000	0.363184	-32(CCTTTTAAATTT,+,0.00)
mm_15437.1	chr2	157279198	157279398	+	1	NA	NA	NA	200	NM_019642	20014	Mm.22130	NM_019642	ENSMUSG00000027642	Rpn2	1300012C06Rik|AV261018|Rpn-2	ribophorin II	protein-coding	0.115000	0.726368	
mm_67986.1	chr7	100855322	100855522	-	1	NA	NA	NA	7991	NM_177073	320100	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.015000	0.557214	
mm_102531.1	chr11	61153040	61153240	-	1	NA	NA	NA	12305	NM_021349	57916	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	0.025000	0.348259	31(GGCTATAAAAGA,-,0.00)
mm_61561.1	chr7	79535929	79536129	+	1	NA	NA	NA	20594	NR_040312	101694	Mm.41661	NR_040311	ENSMUSG00000097023	Mir9-3hg	AI854517	Mir9-3 host gene	ncRNA	0.120000	0.776119	
mm_13530.1	chr2	110597207	110597407	+	1	NA	NA	NA	8	NM_001177624	241612	Mm.277148	NM_001003915	ENSMUSG00000041644	Slc5a12	AI315119|D630015G19|SMCT2	solute carrier family 5 (sodium/glucose cotransporter), member 12	protein-coding	0.010000	0.412935	
mm_57244.1	chr6	123283107	123283307	-	1	NA	NA	NA	6664	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.373134	9(CTGTATAAAGAG,-,0.00)
mm_153446.1	chr19	41011578	41011778	-	1	NA	NA	NA	-17143	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.005000	0.407960	39(CCTTTTAGAGAG,+,0.00)
mm_92143.1	chr10	67011175	67011375	-	1	NA	NA	NA	6200	NR_110511	102634101	Mm.445258	NR_110511		Gm31763	-	predicted gene, 31763	ncRNA	0.005000	0.537313	
mm_170393.1	chr1	86357189	86357389	-	1	NA	NA	NA	-962	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.010000	0.502488	
mm_155849.1	chrX	101273976	101274176	+	1	NA	NA	NA	-15	NM_021521	59024	Mm.20873	NM_021521	ENSMUSG00000079487	Med12	230kDa|Mopa|OPA-1|Tnrc11|Trap230	mediator complex subunit 12	protein-coding	0.110000	0.701493	
mm_27296.1	chr3	45776115	45776315	-	1	NA	NA	NA	-336906	NR_040594	72274	Mm.396202	NR_040594	ENSMUSG00000100799	1700027H10Rik	-	RIKEN cDNA 1700027H10 gene	ncRNA	0.045000	0.502488	-54(TGATATAAAAAG,-,0.00),36(CCTTTAAAATCA,+,0.00)
mm_116210.1	chr13	32783809	32784009	-	1	NA	NA	NA	-2130	NM_001166030	238564	Mm.60041	NM_001166030	ENSMUSG00000044951	Mylk4	EG238564	myosin light chain kinase family, member 4	protein-coding	0.025000	0.517413	
mm_58914.1	chr7	17672211	17672411	+	1	NA	NA	NA	-2	NR_002857	232919	Mm.153893	NR_002857	ENSMUSG00000108558	Psg-ps1	AV036018|Cea-6|Cea6	pregnancy specific glycoprotein pseudogene 1	pseudo	0.005000	0.472637	
mm_27602.1	chr3	59153470	59153670	-	1	NA	NA	NA	58	NR_045641	320463	Mm.484506	NR_045641	ENSMUSG00000036381	F630111L10Rik	-	RIKEN cDNA F630111L10 gene	ncRNA	0.015000	0.482587	
mm_2584.1	chr1	118627953	118628153	+	1	NA	NA	NA	108	NM_023755	81879	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.085000	0.646766	
mm_143617.1	chr17	78768989	78769189	-	1	NA	NA	NA	-32529	NM_011500	268980	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	0.010000	0.492537	
mm_25599.1	chr3	116903606	116903806	+	1	NA	NA	NA	42026	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.005000	0.353234	-11(TGGTTTTAAGGG,-,0.00)
mm_49223.1	chr6	15793467	15793667	+	1	NA	NA	NA	72906	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.010000	0.388060	
mm_131055.1	chr16	4212716	4212916	+	1	NA	NA	NA	588	NM_001025432	12914	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0.045000	0.447761	
mm_126131.1	chr15	78336245	78336445	+	1	NA	NA	NA	10355	NM_007780	12983	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.010000	0.562189	
mm_117022.1	chr13	58183147	58183347	-	1	NA	NA	NA	25598	NM_198004	75731	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	0.020000	0.507463	
mm_26289.1	chr3	142506690	142506890	+	1	NA	NA	NA	9856	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.015000	0.472637	
mm_151432.1	chr19	57131617	57131817	+	1	NA	NA	NA	-12693	NM_001103178	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.015000	0.537313	
mm_52077.1	chr6	97827372	97827572	+	1	NA	NA	NA	20414	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.015000	0.467662	
mm_12449.1	chr2	71211654	71211854	+	1	NA	NA	NA	48	NM_001198876	13427	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0.055000	0.582090	
mm_92964.1	chr10	86011765	86011965	-	1	NA	NA	NA	-5	NM_177772	270757	Mm.107214	NM_177772	ENSMUSG00000050108	Bpifc	4732454E24|Bpil2	BPI fold containing family C	protein-coding	0.010000	0.412935	
mm_78032.1	chr9	13827645	13827845	+	1	NA	NA	NA	18	NM_176836	72826	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0.120000	0.686567	
mm_80523.1	chr9	80067359	80067559	+	1	NA	NA	NA	556	NM_146003	215351	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.125000	0.751244	
mm_10706.1	chr2	22774190	22774390	+	1	NA	NA	NA	-37	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.065000	0.621891	-66(CCCTTTAGGCGG,+,0.00)
mm_51550.1	chr6	83277296	83277496	+	1	NA	NA	NA	40021	NM_001166067	232156	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	0.045000	0.592040	
mm_44813.1	chr5	33535527	33535727	-	1	NA	NA	NA	94008	NM_178390	74504	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	0.010000	0.492537	
mm_114884.1	chr13	94224821	94225021	+	1	NA	NA	NA	60360	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.080000	0.562189	
mm_166912.1	chr7	29281802	29282002	-	1	NA	NA	NA	75	NM_001082548	20733	Mm.295230	NM_011464	ENSMUSG00000074227	Spint2	AL024025|C76321|HAI-2	serine protease inhibitor, Kunitz type 2	protein-coding	0.090000	0.661692	
mm_41268.1	chr5	89085410	89085610	+	1	NA	NA	NA	198250	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.000000	0.477612	
mm_18112.1	chr2	44996007	44996207	-	1	NA	NA	NA	27070	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.025000	0.522388	
mm_99184.1	chr11	100860323	100860523	+	1	NA	NA	NA	-61	NM_001164062	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.100000	0.671642	
mm_30456.1	chr3	153912878	153913078	-	1	NA	NA	NA	-12	NR_028094	19352	Mm.277831	NM_011231	ENSMUSG00000038975	Rabggtb	-	Rab geranylgeranyl transferase, b subunit	protein-coding	0.155000	0.751244	
mm_14884.1	chr2	148835234	148835434	+	1	NA	NA	NA	187	NM_009979	13013	Mm.21005	NM_009979	ENSMUSG00000027445	Cst9	M12|cresp|testatin	cystatin 9	protein-coding	0.010000	0.452736	
mm_94634.1	chr11	16870359	16870559	+	1	NA	NA	NA	80823	NR_110421	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.010000	0.437811	
mm_93378.1	chr10	105558854	105559054	-	1	NA	NA	NA	15525	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.000000	0.457711	
mm_86824.1	chr10	21026984	21027184	+	1	NA	NA	NA	-13736	NM_001177776	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.005000	0.462687	-33(GCTTAAATAGAC,+,0.00)
mm_171204.1	chr3	54538598	54538798	+	1	NA	NA	NA	-154407	NM_019995	56790	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0.000000	0.507463	
mm_74853.1	chr8	24674655	24674855	-	1	NA	NA	NA	0	NR_136908	13524	Mm.89943	NM_010084	ENSMUSG00000031552	Adam18	Adam27|Dtgn3|Tmdc3|tMDCIII	a disintegrin and metallopeptidase domain 18	protein-coding	0.045000	0.641791	
mm_40843.1	chr5	73292734	73292934	+	1	NA	NA	NA	40	NM_001159888	68095	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	0.080000	0.636816	
mm_126229.1	chr15	78947794	78947994	+	1	NA	NA	NA	170	NM_001039155	110253	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.055000	0.577114	
mm_104301.1	chr11	90549342	90549542	-	1	NA	NA	NA	88666	NM_011505	20913	Mm.207203	NM_011505	ENSMUSG00000020546	Stxbp4	6030470M02Rik|Synip	syntaxin binding protein 4	protein-coding	0.010000	0.457711	
mm_22887.1	chr3	30647829	30648029	+	1	NA	NA	NA	43	NM_001290510	68307	Mm.389425	NM_026668	ENSMUSG00000027703	Lrriq4	4930558O21Rik	leucine-rich repeats and IQ motif containing 4	protein-coding	0.040000	0.537313	
mm_135378.1	chr16	44138966	44139166	-	1	NA	NA	NA	-47	NM_007508	11964	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.070000	0.611940	
mm_9647.1	chr1	177258743	177258943	-	1	NA	NA	NA	-10076	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.145000	0.791045	
mm_19703.1	chr2	103775863	103776063	-	1	NA	NA	NA	-14713	NM_153126	98956	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.000000	0.417910	
mm_54979.1	chr6	48740523	48740723	-	1	NA	NA	NA	1576	NM_008376	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.000000	0.492537	
mm_85420.1	chr9	103480242	103480442	-	1	NA	NA	NA	-14	NM_001002896	107993	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding	0.015000	0.592040	
mm_28082.1	chr3	84582649	84582849	-	1	NA	NA	NA	-124	NM_001293801	99889	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	0.120000	0.711443	
mm_153828.1	chr19	46317864	46318064	-	1	NA	NA	NA	8902	NM_001347454	73728	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.185000	0.855721	
mm_136594.1	chr17	5012747	5012947	+	1	NA	NA	NA	17773	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.015000	0.522388	
mm_132806.1	chr16	45158795	45158995	+	1	NA	NA	NA	66	NM_026402	67841	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	0.100000	0.741294	
mm_28759.1	chr3	95881939	95882139	-	1	NA	NA	NA	189	NM_001033302	229599	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	0.075000	0.636816	
mm_68449.1	chr7	110059644	110059844	-	1	NA	NA	NA	-1958	NM_009281	20841	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0.045000	0.482587	
mm_39585.1	chr5	23482372	23482572	+	1	NA	NA	NA	48043	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.005000	0.338308	
mm_16835.1	chr2	11498308	11498508	-	1	NA	NA	NA	3682	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.000000	0.467662	
mm_168873.1	chr12	38074909	38075109	+	1	NA	NA	NA	194304	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	0.050000	0.646766	
mm_70953.1	chr8	26977223	26977423	+	1	NA	NA	NA	-13	NM_001101502	353310	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.115000	0.731343	
mm_141664.1	chr17	33781443	33781643	-	1	NA	NA	NA	32	NM_020581	57875	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	0.045000	0.587065	-33(CGCTTTATAAAG,-,0.00),-31(CTTTATAAAGTG,+,0.00)
mm_25962.1	chr3	132684026	132684226	+	1	NA	NA	NA	-18	NM_001163455	271981	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0.095000	0.671642	
mm_124300.1	chr14	103055620	103055820	-	1	NA	NA	NA	8708	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.005000	0.398010	
mm_100835.1	chr11	5542055	5542255	-	1	NA	NA	NA	62	NM_134033	104479	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	0.090000	0.626866	
mm_75597.1	chr8	61703080	61703280	-	1	NA	NA	NA	56918	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.030000	0.552239	
mm_76980.1	chr8	106886302	106886502	-	1	NA	NA	NA	7191	NM_145412	214987	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	0.020000	0.487562	
mm_40229.1	chr5	37286336	37286536	+	1	NA	NA	NA	40672	NM_007765	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.020000	0.532338	
mm_147742.1	chr18	61109668	61109868	-	1	NA	NA	NA	4196	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.035000	0.557214	
mm_158176.1	chrX	103958181	103958381	-	1	NA	NA	NA	23003	NM_011276	19820	Mm.427762	NM_011276	ENSMUSG00000056537	Rlim	AL022832|AW743871|Ha1r|Rlim1|Rnf12	ring finger protein, LIM domain interacting	protein-coding	0.010000	0.348259	-68(GTATCTAAAAGC,-,0.00)
mm_133132.1	chr16	65839289	65839489	+	1	NA	NA	NA	23756	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.025000	0.592040	
mm_124481.1	chr14	121623950	121624150	-	1	NA	NA	NA	74367	NM_001347596	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.015000	0.522388	-33(GAGCATAAAAGA,-,0.00)
mm_172894.1	chr9	56223615	56223815	-	1	NA	NA	NA	-62645	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.145000	0.701493	
mm_107963.1	chr12	72735778	72735978	+	1	NA	NA	NA	-25333	NM_008910	19042	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.020000	0.477612	
mm_160620.1	chr9	96478495	96478695	-	1	NA	NA	NA	80	NM_011279	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.145000	0.726368	
mm_112192.1	chr12	113425327	113425527	-	1	NA	NA	NA	-64138	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.577114	
mm_164951.1	chr19	5050357	5050557	+	1	NA	NA	NA	-351	NM_145495	225870	Mm.271922	NM_145495	ENSMUSG00000024883	Rin1	-	Ras and Rab interactor 1	protein-coding	0.010000	0.577114	
mm_82072.1	chr9	122903201	122903401	+	1	NA	NA	NA	14830	NM_001177505	382118	Mm.86999	NM_001177505	ENSMUSG00000063488	Zkscan7	BC042569|Zfp167	zinc finger with KRAB and SCAN domains 7	protein-coding	0.065000	0.636816	
mm_103234.1	chr11	70683529	70683729	-	1	NA	NA	NA	4476	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.000000	0.517413	
mm_67657.1	chr7	84834937	84835137	-	1	NA	NA	NA	-18534	NM_146415	258410	Mm.484702	NM_146415	ENSMUSG00000070460	Olfr291	MOR254-2	olfactory receptor 291	protein-coding	0.025000	0.517413	
mm_68312.1	chr7	105787415	105787615	-	1	NA	NA	NA	35	NM_001162943	233651	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous 1 (Drosophila)	protein-coding	0.150000	0.771144	
mm_31078.1	chr4	41517312	41517512	+	1	NA	NA	NA	-25	NR_045726	76992	Mm.440546	NR_045726	ENSMUSG00000036162	Fam219aos	1700066J24Rik	family with sequence similarity 219, member A, opposite strand	ncRNA	0.000000	0.512438	
mm_71076.1	chr8	34216735	34216935	+	1	NA	NA	NA	-50123	NR_105820	102465211		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	0.025000	0.567164	
mm_47659.1	chr5	125393232	125393432	-	1	NA	NA	NA	-3315	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.025000	0.606965	
mm_79072.1	chr9	46240960	46241160	+	1	NA	NA	NA	216	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.025000	0.587065	-32(GGCTTTAAATGA,-,0.00)
mm_161433.1	chr15	57985884	57986084	+	1	NA	NA	NA	81	NM_173862	239463	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.040000	0.572139	
mm_58441.1	chr7	3298118	3298318	+	1	NA	NA	NA	5190	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.005000	0.487562	
mm_28375.1	chr3	89959051	89959251	-	1	NA	NA	NA	4181	NM_001081182	54667	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	0.020000	0.512438	
mm_137772.1	chr17	29491250	29491450	+	1	NA	NA	NA	305	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.120000	0.696517	
mm_137178.1	chr17	23816103	23816303	+	1	NA	NA	NA	12906	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.060000	0.517413	
mm_135698.1	chr16	52452545	52452745	-	1	NA	NA	NA	436	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.070000	0.641791	
mm_42206.1	chr5	112344619	112344819	+	1	NA	NA	NA	1624	NM_138646	192232	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	Hermansky-Pudlak syndrome 4	protein-coding	0.000000	0.527363	
mm_90648.1	chr10	128745114	128745314	+	1	NA	NA	NA	-1158	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.015000	0.378109	
mm_76827.1	chr8	104624186	104624386	-	1	NA	NA	NA	110	NM_007663	12556	Mm.19423	NM_007663	ENSMUSG00000031881	Cdh16	-	cadherin 16	protein-coding	0.025000	0.587065	
mm_31108.1	chr4	42917184	42917384	+	1	NA	NA	NA	33	NM_172690	230085	Mm.240965	NM_172690	ENSMUSG00000036062	Phf24	GINIP|N28178	PHD finger protein 24	protein-coding	0.195000	0.835821	
mm_158011.1	chrX	95658227	95658427	-	1	NA	NA	NA	182	NM_001289696	245522	Mm.336158	NM_001003916	ENSMUSG00000035062	Zc4h2	Gm372|mKIAA1166	zinc finger, C4H2 domain containing	protein-coding	0.010000	0.412935	
mm_94052.1	chr10	128180142	128180342	-	1	NA	NA	NA	55	NM_001039080	56516	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.025000	0.512438	
mm_20342.1	chr2	127656151	127656351	-	1	NA	NA	NA	444	NM_010762	17153	Mm.39040	NM_010762	ENSMUSG00000027375	Mal	Mpv17|Vip17	myelin and lymphocyte protein, T cell differentiation protein	protein-coding	0.100000	0.711443	
mm_18450.1	chr2	60962711	60962911	-	1	NA	NA	NA	393	NM_020296	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.060000	0.616915	
mm_171474.1	chr4	145781479	145781679	+	1	NA	NA	NA	36	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.030000	0.527363	
mm_43014.1	chr5	123907105	123907305	+	1	NA	NA	NA	-70	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.115000	0.696517	
mm_152510.1	chr19	11266083	11266283	-	1	NA	NA	NA	-32	NM_007641	12482	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	0.015000	0.467662	
mm_164354.1	chr16	20716043	20716243	-	1	NA	NA	NA	493	NM_009900	12724	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	0.135000	0.796020	
mm_61535.1	chr7	79084432	79084632	+	1	NA	NA	NA	31049	NM_007424	11595	Mm.358571	NM_007424	ENSMUSG00000030607	Acan	Agc|Agc1|Cspg1|b2b183Clo|cmd	aggrecan	protein-coding	0.020000	0.562189	
mm_65126.1	chr7	19458662	19458862	-	1	NA	NA	NA	-268	NM_172279	232944	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.110000	0.800995	
mm_172931.1	chr9	7722975	7723175	+	1	NA	NA	NA	-27444	NR_126562	102722	Mm.334941	NR_126562	ENSMUSG00000086381	AV064505	-	expressed sequence AV064505	ncRNA	0.045000	0.487562	
mm_62203.1	chr7	97830825	97831025	+	1	NA	NA	NA	-12014	NM_011035	18479	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding	0.005000	0.497512	
mm_35502.1	chr4	41048057	41048257	-	1	NA	NA	NA	-21	NM_007473	11832	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	0.000000	0.527363	
mm_11800.1	chr2	43659553	43659753	+	1	NA	NA	NA	-89171	NM_001301832	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.010000	0.348259	
mm_167323.1	chr8	68533283	68533483	-	1	NA	NA	NA	164924	NR_038181	73609	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0.000000	0.487562	
mm_52504.1	chr6	115360801	115361001	+	1	NA	NA	NA	-50	NM_001127330	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.135000	0.791045	
mm_136638.1	chr17	5726437	5726637	+	1	NA	NA	NA	-72120	NR_045081	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.005000	0.323383	60(TCCTATAAATGC,-,0.00)
mm_6489.1	chr1	74124389	74124589	-	1	NA	NA	NA	-40	NM_001289895	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.140000	0.796020	
mm_16933.1	chr2	14055804	14056004	-	1	NA	NA	NA	131	NM_001012396	30963	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	0.155000	0.761194	
mm_41896.1	chr5	105518989	105519189	+	1	NA	NA	NA	-382	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.055000	0.621891	
mm_84080.1	chr9	58202076	58202276	-	1	NA	NA	NA	109	NM_177193	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.045000	0.572139	71(GTGTTTAAAGGC,-,0.00)
mm_166155.1	chr5	13587388	13587588	+	1	NA	NA	NA	188179	NM_009152	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.000000	0.333333	
mm_96810.1	chr11	69991558	69991758	+	1	NA	NA	NA	288	NM_019749	56486	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0.105000	0.656716	
mm_30248.1	chr3	146586283	146586483	-	1	NA	NA	NA	-10766	NM_009474	22262	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.005000	0.338308	50(CACTATAAAAAC,-,0.00)
mm_157037.1	chrX	7947753	7947953	-	1	NA	NA	NA	36	NM_001130416	15185	Mm.29854	NM_010413	ENSMUSG00000031161	Hdac6	Hd6|Hdac5|Sfc6|mHDA2	histone deacetylase 6	protein-coding	0.065000	0.646766	
mm_137368.1	chr17	25471581	25471781	+	1	NA	NA	NA	91	NM_027951	71840	Mm.282330	NM_027951	ENSMUSG00000024175	Tekt4	1700010L19Rik	tektin 4	protein-coding	0.025000	0.557214	
mm_102398.1	chr11	59002280	59002480	-	1	NA	NA	NA	24287	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.010000	0.537313	
mm_172196.1	chr6	51466239	51466439	-	1	NA	NA	NA	3555	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.000000	0.348259	-52(CACCATAAATGG,-,0.00),-50(CCATAAATGGTC,+,0.00)
mm_137600.1	chr17	28207705	28207905	+	1	NA	NA	NA	27	NM_027185	23853	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0.060000	0.641791	
mm_140575.1	chr17	9775757	9775957	-	1	NA	NA	NA	9	NR_045433	71092	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	0.020000	0.472637	
mm_76209.1	chr8	83442393	83442593	-	1	NA	NA	NA	169	NM_001285992	56367	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	0.115000	0.701493	
mm_89877.1	chr10	108332036	108332236	+	1	NA	NA	NA	-53	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.110000	0.736318	
mm_165312.1	chr2	102968439	102968639	-	1	NA	NA	NA	-66874	NM_001039150	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.005000	0.402985	
mm_117263.1	chr13	64369015	64369215	-	1	NA	NA	NA	1405	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.010000	0.437811	
mm_85620.1	chr9	107614797	107614997	-	1	NA	NA	NA	-5656	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.035000	0.601990	
mm_63654.1	chr7	128748860	128749060	+	1	NA	NA	NA	4090	NM_001029982	207352	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	0.005000	0.562189	
mm_78387.1	chr9	28403425	28403625	+	1	NA	NA	NA	612256	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.135000	0.776119	
mm_23579.1	chr3	63381239	63381439	+	1	NA	NA	NA	85244	NM_001289463	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.010000	0.402985	
mm_34776.1	chr4	153975105	153975305	+	1	NA	NA	NA	-124	NM_007859	13368	Mm.388918	NM_007859	ENSMUSG00000029027	Dffb	40kDa|5730477D02Rik|CAD|CPAN|DFF40|Didff	DNA fragmentation factor, beta subunit	protein-coding	0.105000	0.761194	
mm_128773.1	chr15	66560995	66561195	-	1	NA	NA	NA	-49	NM_172514	213068	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	0.020000	0.467662	
mm_149643.1	chr19	17400444	17400644	+	1	NA	NA	NA	6501	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.005000	0.363184	-79(GCATTTATAGAC,+,0.00),-6(TTTTTTAAAGTG,+,0.00)
mm_124110.1	chr14	79467318	79467518	-	1	NA	NA	NA	-13776	NM_007920	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.025000	0.442786	
mm_69973.1	chr7	142376988	142377188	-	1	NA	NA	NA	-3342	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.005000	0.577114	
mm_23838.1	chr3	82358076	82358276	+	1	NA	NA	NA	104	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0.060000	0.641791	
mm_82259.1	chr9	5311375	5311575	-	1	NA	NA	NA	2626	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.005000	0.487562	
mm_612.1	chr1	40009819	40010019	+	1	NA	NA	NA	-74849	NM_010555	16178	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.015000	0.527363	38(GCTTTTATACAC,+,0.00)
mm_168648.1	chr11	8605233	8605433	-	1	NA	NA	NA	59202	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.015000	0.482587	
mm_97305.1	chr11	76679545	76679745	+	1	NA	NA	NA	-228	NM_177709	237858	Mm.127006	NM_177709	ENSMUSG00000046275	Tusc5	C130069F04Rik|DSPB1|Lost1	tumor suppressor candidate 5	protein-coding	0.010000	0.557214	
mm_79915.1	chr9	65541789	65541989	+	1	NA	NA	NA	38198	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.020000	0.562189	
mm_80638.1	chr9	89248418	89248618	+	1	NA	NA	NA	37328	NM_026829	107885	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.000000	0.512438	
mm_108795.1	chr12	91403938	91404138	+	1	NA	NA	NA	3045	NM_011648	22095	Mm.173847	NM_011648	ENSMUSG00000020963	Tshr	AI481368|hypothroid|hyt|pet	thyroid stimulating hormone receptor	protein-coding	0.005000	0.542289	
mm_125070.1	chr15	25941050	25941250	+	1	NA	NA	NA	324	NM_025459	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.020000	0.527363	-32(CTTCTTAGAGCC,+,0.00)
mm_30247.1	chr3	146571784	146571984	-	1	NA	NA	NA	-25265	NM_009474	22262	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.000000	0.482587	
mm_26469.1	chr3	144570182	144570382	+	1	NA	NA	NA	-66	NM_011828	23908	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.110000	0.686567	
mm_2599.1	chr1	120006921	120007121	+	1	NA	NA	NA	41	NM_001311077	319229	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	0.025000	0.601990	
mm_136494.1	chr16	96127924	96128124	-	1	NA	NA	NA	-299	NM_008251	15312	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	0.115000	0.691542	
mm_142453.1	chr17	45592832	45593032	-	1	NA	NA	NA	-539	NM_022880	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.010000	0.562189	
mm_40361.1	chr5	48022793	48022993	+	1	NA	NA	NA	39738	NM_001291228	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding	0.000000	0.298507	
mm_56236.1	chr6	90662644	90662844	-	1	NA	NA	NA	43498	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.010000	0.661692	
mm_35461.1	chr4	40722220	40722420	-	1	NA	NA	NA	-3	NR_077221	622208	Mm.471544	NR_077221		Gm6297	-	predicted gene 6297	ncRNA	0.065000	0.606965	
mm_116071.1	chr13	27642380	27642580	-	1	NA	NA	NA	13	NM_001164058	19113	Mm.196424	NM_008930	ENSMUSG00000006488	Prl7a1	AA407021|AA409971|AA410116|PLP-E|PLP-G|Prlpe|Prlpg	prolactin family 7, subfamily a, member 1	protein-coding	0.015000	0.442786	-45(GACTATATAGGA,-,0.00)
mm_130011.1	chr15	86706318	86706518	-	1	NA	NA	NA	491959	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.030000	0.532338	
mm_60575.1	chr7	44481554	44481754	+	1	NA	NA	NA	-2863	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.497512	
mm_24502.1	chr3	92432482	92432682	+	1	NA	NA	NA	0	NM_011477	20765	Mm.57085	NM_011477	ENSMUSG00000054215	Sprr2k	-	small proline-rich protein 2K	protein-coding	0.000000	0.407960	66(GTATTTATGGCC,+,0.00)
mm_170352.1	chr1	85109552	85109752	-	1	NA	NA	NA	201	NM_213615	381287	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.020000	0.552239	
mm_20195.1	chr2	122738255	122738455	-	1	NA	NA	NA	-150	NM_019788	18457	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	0.095000	0.631841	
mm_62591.1	chr7	105640912	105641112	+	1	NA	NA	NA	472	NM_019502	14356	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0.035000	0.597015	
mm_67463.1	chr7	80403960	80404160	-	1	NA	NA	NA	-1248	NM_011046	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.015000	0.447761	-31(ACTTTTAGAGAC,+,0.00)
mm_20823.1	chr2	146099112	146099312	-	1	NA	NA	NA	-122785	NM_016889	53626	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	0.020000	0.507463	
mm_139357.1	chr17	50525206	50525406	+	1	NA	NA	NA	15759	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.020000	0.452736	
mm_171848.1	chr5	16904155	16904355	+	1	NA	NA	NA	350354	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.070000	0.656716	
mm_108936.1	chr12	101975638	101975838	+	1	NA	NA	NA	-236	NM_016856	51786	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.095000	0.671642	
mm_91687.1	chr10	43971925	43972125	-	1	NA	NA	NA	32821	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.015000	0.398010	-3(GCTTTTATATCT,+,0.00)
mm_90862.1	chr10	8885821	8886021	-	1	NA	NA	NA	149	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.170000	0.786070	
mm_114934.1	chr13	95893385	95893585	+	1	NA	NA	NA	-1563	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.005000	0.492537	
mm_33693.1	chr4	133518644	133518844	+	1	NA	NA	NA	-219	NM_001083916	69073	Mm.299081	NM_133707	ENSMUSG00000037600	Kdf1	1810019J16Rik	keratinocyte differentiation factor 1	protein-coding	0.030000	0.557214	
mm_4369.1	chr1	172102005	172102205	+	1	NA	NA	NA	-19356	NM_021607	59287	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	0.005000	0.502488	
mm_84362.1	chr9	64737624	64737824	-	1	NA	NA	NA	32	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.115000	0.716418	
mm_41722.1	chr5	102481278	102481478	+	1	NA	NA	NA	-13	NM_146161	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.050000	0.621891	
mm_16249.1	chr2	173158677	173158877	+	1	NA	NA	NA	5704	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.015000	0.487562	-6(CTTTTAATAGTC,+,0.00)
mm_119878.1	chr14	54883360	54883560	+	1	NA	NA	NA	35	NM_007537	12050	Mm.6967	NM_007537	ENSMUSG00000089682	Bcl2l2	AW048834|Bcl-w|Gtrgal2|Gtrosa41|bclw|c98	BCL2-like 2	protein-coding	0.050000	0.681592	
mm_49863.1	chr6	38551444	38551644	+	1	NA	NA	NA	210	NM_001170848	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.105000	0.691542	
mm_164855.1	chr18	49402339	49402539	-	1	NA	NA	NA	-120850	NR_033785	67321	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0.005000	0.402985	
mm_40584.1	chr5	64159336	64159536	+	1	NA	NA	NA	-824	NM_019636	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.085000	0.621891	
mm_124325.1	chr14	103842965	103843165	-	1	NA	NA	NA	636	NM_007904	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.050000	0.482587	
mm_76417.1	chr8	84969347	84969547	-	1	NA	NA	NA	-175	NM_001317385	21672	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0.070000	0.636816	
mm_45024.1	chr5	38561690	38561890	-	1	NA	NA	NA	-195	NM_011715	22388	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0.145000	0.731343	36(GACTATATATGG,-,0.00)
mm_114431.1	chr13	65240844	65241044	+	1	NA	NA	NA	-35228	NM_175290	97895	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	0.075000	0.616915	
mm_154214.1	chr19	59301335	59301535	-	1	NA	NA	NA	40557	NM_172523	214084	Mm.268797	NM_172523	ENSMUSG00000025094	Slc18a2	1110037L13Rik|9330105E13|Vmat2	solute carrier family 18 (vesicular monoamine), member 2	protein-coding	0.040000	0.452736	
mm_125026.1	chr15	25749867	25750067	+	1	NA	NA	NA	-93331	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.000000	0.482587	
mm_72326.1	chr8	78733433	78733633	+	1	NA	NA	NA	87619	NM_001191004	78651	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.000000	0.283582	-79(GCTTTAAAACTG,+,0.00)
mm_127032.1	chr15	96370158	96370358	+	1	NA	NA	NA	82736	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.010000	0.522388	
mm_67469.1	chr7	80419296	80419496	-	1	NA	NA	NA	-13960	NM_001081454	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.015000	0.552239	
mm_39693.1	chr5	27049297	27049497	+	1	NA	NA	NA	198	NM_207282	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.085000	0.577114	
mm_20829.1	chr2	146511955	146512155	-	1	NA	NA	NA	-51	NM_001033348	241694	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	0.130000	0.761194	
mm_93970.1	chr10	127290249	127290449	-	1	NA	NA	NA	-444	NM_007837	13198	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	0.035000	0.626866	
mm_113843.1	chr13	47193943	47194143	+	1	NA	NA	NA	40	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.040000	0.626866	
mm_17.1	chr1	5083033	5083233	+	1	NA	NA	NA	47	NM_001310442	108664	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	0.100000	0.646766	
mm_29732.1	chr3	126831326	126831526	-	1	NA	NA	NA	111960	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.005000	0.537313	
mm_158223.1	chrX	106011733	106011933	-	1	NA	NA	NA	66	NM_001190409	67075	Mm.275943	NM_025952	ENSMUSG00000031232	Magt1	2410001C15Rik|2610529C04Rik|2810482I07Rik|IAG2|IAP	magnesium transporter 1	protein-coding	0.095000	0.631841	-100(TTTTTTAAAAGC,-,0.00),-99(TTTTTAAAAGCG,+,0.00)
mm_34245.1	chr4	141239546	141239746	+	1	NA	NA	NA	-3238	NM_172520	213649	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	0.040000	0.601990	
mm_97095.1	chr11	73177149	73177349	+	1	NA	NA	NA	166	NM_029564	76281	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	0.070000	0.616915	
mm_152915.1	chr19	27429739	27429939	-	1	NA	NA	NA	69	NM_177474	52874	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e|Kiaa0020	pumilio RNA-binding family member 3	protein-coding	0.100000	0.646766	
mm_50780.1	chr6	53697908	53698108	+	1	NA	NA	NA	122817	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.020000	0.402985	
mm_86483.1	chr10	4863351	4863551	+	1	NA	NA	NA	153293	NM_001302533	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.000000	0.393035	
mm_30877.1	chr4	32238859	32239059	+	1	NA	NA	NA	-178476	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.135000	0.791045	
mm_11368.1	chr2	30982263	30982463	+	1	NA	NA	NA	84	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.095000	0.686567	
mm_85414.1	chr9	103449061	103449261	-	1	NA	NA	NA	25583	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.015000	0.472637	
mm_148808.1	chr19	6276771	6276971	+	1	NA	NA	NA	-25	NM_010119	13660	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.150000	0.796020	
mm_76431.1	chr8	84978617	84978817	-	1	NA	NA	NA	31	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.075000	0.651741	-34(CAGTATAAAAGC,-,0.00)
mm_141839.1	chr17	34722315	34722515	-	1	NA	NA	NA	21482	NM_009780	12268	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	0.005000	0.487562	
mm_172689.1	chr8	59741584	59741784	+	1	NA	NA	NA	-83965	NR_126087	75017	Mm.60775	NR_126087	ENSMUSG00000110406	4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA	0.010000	0.422886	
mm_93258.1	chr10	95563925	95564125	-	1	NA	NA	NA	142	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.165000	0.761194	
mm_65705.1	chr7	28377925	28378125	-	1	NA	NA	NA	1203	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.045000	0.621891	88(GCTTTTCTGGCC,+,0.00)
mm_53277.1	chr6	128657883	128658083	+	1	NA	NA	NA	-4402	NM_053165	94071	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	0.000000	0.447761	
mm_22551.1	chr3	9403021	9403221	+	1	NA	NA	NA	43	NR_015499	320088	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.015000	0.512438	
mm_20303.1	chr2	127141484	127141684	-	1	NA	NA	NA	1006	NM_001163528	73338	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	0.030000	0.611940	
mm_164033.1	chr14	79301089	79301289	+	1	NA	NA	NA	446	NM_025427	66214	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	0.090000	0.631841	
mm_94909.1	chr11	29374265	29374465	+	1	NA	NA	NA	193	NM_176841	108686	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0.020000	0.467662	
mm_119443.1	chr14	46832039	46832239	+	1	NA	NA	NA	-105	NM_026832	68755	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	0.075000	0.651741	
mm_158143.1	chrX	103438140	103438340	-	1	NA	NA	NA	6723	NR_002844	22097	Mm.472939	NR_002844	ENSMUSG00000085715	Tsix	-	X (inactive)-specific transcript, opposite strand	ncRNA	0.025000	0.497512	
mm_27836.1	chr3	79142865	79143065	-	1	NA	NA	NA	1922	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.437811	
mm_80442.1	chr9	77960786	77960986	+	1	NA	NA	NA	43521	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.020000	0.432836	
mm_81387.1	chr9	108982858	108983058	+	1	NA	NA	NA	-3205	NM_145077	171530	Mm.388865	NM_145077	ENSMUSG00000049699	Ucn2	Ucn II|Ucn-2|ucn-II	urocortin 2	protein-coding	0.010000	0.557214	
mm_131463.1	chr16	17026262	17026462	+	1	NA	NA	NA	42980	NM_001038663	26413	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	0.010000	0.353234	
mm_132066.1	chr16	30055618	30055818	+	1	NA	NA	NA	-9639	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hairy and enhancer of split 1 (Drosophila)	protein-coding	0.020000	0.507463	-34(CTCTATAAAAAC,-,0.00)
mm_24189.1	chr3	88607353	88607553	+	1	NA	NA	NA	-8754	NM_001198911	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.030000	0.507463	
mm_63658.1	chr7	129432369	129432569	+	1	NA	NA	NA	-159394	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.010000	0.447761	
mm_93863.1	chr10	122985957	122986157	-	1	NA	NA	NA	-333	NR_029527	387251		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.135000	0.761194	-35(GCCTCTTTAAGG,-,0.00)
mm_144669.1	chr18	34542125	34542325	+	1	NA	NA	NA	-103	NM_009290	20890	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	0.020000	0.562189	
mm_127547.1	chr15	102144405	102144605	+	1	NA	NA	NA	319	NM_008344	16012	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	0.025000	0.582090	-63(TGGCTTTTAAGG,-,0.00),-62(GGCTTTTAAGGG,-,0.00),-61(GCTTTTAAGGGG,+,0.00),-60(CTTTTAAGGGGC,+,0.00)
mm_129470.1	chr15	78670449	78670649	-	1	NA	NA	NA	47564	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0.020000	0.621891	
mm_7567.1	chr1	124783710	124783910	-	1	NA	NA	NA	651917	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.015000	0.412935	
mm_146220.1	chr18	77038787	77038987	+	1	NA	NA	NA	8409	NM_027721	71206	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	0.010000	0.532338	
mm_80846.1	chr9	98296469	98296669	+	1	NA	NA	NA	-14	NM_144533	74080	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	0.075000	0.661692	
mm_87377.1	chr10	44475892	44476092	+	1	NA	NA	NA	-17244	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.005000	0.402985	
mm_144940.1	chr18	37755643	37755843	+	1	NA	NA	NA	-30	NM_033594	93723	Mm.247203	NM_033594	ENSMUSG00000102742	Pcdhga11	-	protocadherin gamma subfamily A, 11	protein-coding	0.055000	0.467662	
mm_39901.1	chr5	31240854	31241054	+	1	NA	NA	NA	36	NM_147201	192292	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	0.120000	0.736318	
mm_119756.1	chr14	54166463	54166663	+	1	NA	NA	NA	87366	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.477612	
mm_71247.1	chr8	40914853	40915053	+	1	NA	NA	NA	-11280	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.045000	0.502488	
mm_12784.1	chr2	79330857	79331057	+	1	NA	NA	NA	75531	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.005000	0.368159	71(GCCTATTTAGGC,-,0.00)
mm_160518.1	chr9	24097980	24098180	+	1	NA	NA	NA	62	NM_175678	319239	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	0.025000	0.577114	
mm_48643.1	chr5	145584625	145584825	-	1	NA	NA	NA	5	NM_017396	53973	Mm.379071	NM_017396	ENSMUSG00000075551	Cyp3a41a	Cyp3a41	cytochrome P450, family 3, subfamily a, polypeptide 41A	protein-coding	0.000000	0.482587	
mm_134643.1	chr16	21766461	21766661	-	1	NA	NA	NA	21273	NM_023737	74147	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0.030000	0.477612	
mm_144739.1	chr18	35564292	35564492	+	1	NA	NA	NA	2234	NM_010771	17184	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0.010000	0.353234	
mm_72862.1	chr8	88577447	88577647	+	1	NA	NA	NA	49914	NM_001163660	93960	Mm.30219	NM_027280	ENSMUSG00000031661	Nkd1	2810434J10Rik|9030215G15Rik|Nkd	naked cuticle 1 homolog (Drosophila)	protein-coding	0.000000	0.402985	
mm_117227.1	chr13	64153101	64153301	-	1	NA	NA	NA	-2	NM_175494	238673	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	0.135000	0.666667	
mm_58560.1	chr7	4741728	4741928	+	1	NA	NA	NA	1701	NM_001115018	232811	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	0.030000	0.557214	29(GGTTTTTAAAGC,-,0.00),30(GTTTTTAAAGCA,+,0.00)
mm_47133.1	chr5	120486011	120486211	-	1	NA	NA	NA	9564	NM_145565	231691	Mm.28685	NM_145565	ENSMUSG00000029597	Sds	4432411H13Rik|SDH	serine dehydratase	protein-coding	0.030000	0.562189	
mm_110240.1	chr12	30911504	30911704	-	1	NA	NA	NA	8	NM_021330	11431	Mm.359831	NM_021330	ENSMUSG00000044573	Acp1	4632432E04Rik|AI427468|Acp-1|LMW-PTP|Lmptp	acid phosphatase 1, soluble	protein-coding	0.110000	0.681592	
mm_37264.1	chr4	118457412	118457612	-	1	NA	NA	NA	1	NM_001285496	17480	Mm.4864	NM_010823	ENSMUSG00000006389	Mpl	CD110|TPO-R|c-mpl|hlb219	myeloproliferative leukemia virus oncogene	protein-coding	0.015000	0.646766	
mm_42842.1	chr5	122131846	122132046	+	1	NA	NA	NA	2947	NM_001289811	330188	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0.090000	0.661692	
mm_27838.1	chr3	79145821	79146021	-	1	NA	NA	NA	-46	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.020000	0.447761	
mm_87740.1	chr10	60261139	60261339	+	1	NA	NA	NA	-16389	NM_001146123	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.010000	0.502488	
mm_20584.1	chr2	131158421	131158621	-	1	NA	NA	NA	1499	NM_026091	67326	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	0.010000	0.487562	
mm_58690.1	chr7	12897743	12897943	+	1	NA	NA	NA	34	NM_001290441	232878	Mm.40706	NM_001001447	ENSMUSG00000054715	Zscan22	AW227621|D530006B18Rik|Hkr2	zinc finger and SCAN domain containing 22	protein-coding	0.070000	0.631841	
mm_111618.1	chr12	102404608	102404808	-	1	NA	NA	NA	35105	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.000000	0.452736	-71(TGGTCTATAAGG,-,0.00)
mm_126852.1	chr15	89196084	89196284	+	1	NA	NA	NA	290	NM_027081	69440	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	0.045000	0.641791	
mm_59573.1	chr7	28115502	28115702	+	1	NA	NA	NA	-13864	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.547264	
mm_124783.1	chr15	7497277	7497477	+	1	NA	NA	NA	-98982	NM_001289498	268780	Mm.203208	NM_178748	ENSMUSG00000042961	Egflam	5930412K08|AU040377	EGF-like, fibronectin type III and laminin G domains	protein-coding	0.010000	0.437811	
mm_97269.1	chr11	75765244	75765444	+	1	NA	NA	NA	-30465	NR_136933	102641247	Mm.411386	NR_136932		Gm12339	OTTMUSG00000006218	predicted gene 12339	ncRNA	0.035000	0.542289	
mm_102865.1	chr11	69405352	69405552	-	1	NA	NA	NA	-7218	NM_025915	67020	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.030000	0.656716	
mm_150836.1	chr19	44837243	44837443	+	1	NA	NA	NA	-1405	NR_045315	73322	Mm.250457	NR_045315	ENSMUSG00000092369	1700039E22Rik	-	RIKEN cDNA 1700039E22 gene	ncRNA	0.040000	0.562189	
mm_112788.1	chr13	20185194	20185394	+	1	NA	NA	NA	94787	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.050000	0.527363	
mm_82600.1	chr9	21320521	21320721	-	1	NA	NA	NA	-98	NM_001199186	68682	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0.040000	0.552239	88(GTTTTTAGACAG,+,0.00)
mm_127980.1	chr15	12424697	12424897	-	1	NA	NA	NA	103301	NM_025673	66629	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.010000	0.388060	
mm_152993.1	chr19	29806310	29806510	-	1	NA	NA	NA	-401	NM_172836	240613	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	ENSMUSG00000048936|Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	0.090000	0.761194	
mm_143502.1	chr17	71598573	71598773	-	1	NA	NA	NA	88	NR_015549	68789	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	0.085000	0.611940	
mm_98500.1	chr11	94951859	94952059	+	1	NA	NA	NA	-15634	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.000000	0.432836	
mm_31011.1	chr4	40269836	40270036	+	1	NA	NA	NA	-95	NM_134097	106021	Mm.251548	NM_134097	ENSMUSG00000036822	Topors	AW105885|LUN|TP53BPL|p53BP3/LUN	topoisomerase I binding, arginine/serine-rich	protein-coding	0.040000	0.577114	
mm_1187.1	chr1	62660714	62660914	+	1	NA	NA	NA	-42503	NM_001077406	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.040000	0.542289	
mm_145758.1	chr18	64887746	64887946	+	1	NA	NA	NA	90	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.155000	0.796020	
mm_147229.1	chr18	38209640	38209840	-	1	NA	NA	NA	22	NM_029357	75599	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.060000	0.621891	
mm_90449.1	chr10	127676982	127677182	+	1	NA	NA	NA	17	NM_001113211	210035	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0.105000	0.736318	
mm_87343.1	chr10	43518474	43518674	+	1	NA	NA	NA	22420	NM_026411	67851	Mm.209953	NM_026411	ENSMUSG00000019797	1700021F05Rik	-	RIKEN cDNA 1700021F05 gene	protein-coding	0.035000	0.557214	
mm_57944.1	chr6	134792539	134792739	-	1	NA	NA	NA	-11	NM_001048054	70686	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	0.050000	0.557214	
mm_119640.1	chr14	51907994	51908194	+	1	NA	NA	NA	5394	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.010000	0.467662	
mm_67823.1	chr7	98271973	98272173	-	1	NA	NA	NA	37454	NM_025408	66190	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca	alkaline ceramidase 3	protein-coding	0.005000	0.308458	
mm_145674.1	chr18	61555629	61555829	+	1	NA	NA	NA	147	NM_146087	93687	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0.090000	0.621891	
mm_146871.1	chr18	25168931	25169131	-	1	NA	NA	NA	11	NM_001033532	225289	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	0.125000	0.766169	
mm_122757.1	chr14	54222393	54222593	-	1	NA	NA	NA	31436	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.467662	
mm_63708.1	chr7	130674545	130674745	+	1	NA	NA	NA	-17911	NM_001347637	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.035000	0.577114	
mm_62596.1	chr7	105650684	105650884	+	1	NA	NA	NA	10244	NM_019502	14356	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0.025000	0.616915	
mm_15899.1	chr2	164952329	164952529	+	1	NA	NA	NA	4210	NM_013599	17395	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.015000	0.542289	
mm_3366.1	chr1	138304374	138304574	+	1	NA	NA	NA	30736	NM_177397	338375	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.005000	0.432836	
mm_27851.1	chr3	79156637	79156837	-	1	NA	NA	NA	-10862	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.005000	0.318408	
mm_141148.1	chr17	26506080	26506280	-	1	NA	NA	NA	2292	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.015000	0.537313	
mm_93660.1	chr10	117690445	117690645	-	1	NA	NA	NA	20213	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.030000	0.517413	
mm_15881.1	chr2	164839141	164839341	+	1	NA	NA	NA	5468	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.040000	0.577114	
mm_128453.1	chr15	50772698	50772898	-	1	NA	NA	NA	116251	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.015000	0.457711	
mm_26120.1	chr3	137864482	137864682	+	1	NA	NA	NA	95	NM_016750	51788	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0.125000	0.661692	-27(CAGTATAAAGGG,-,0.00)
mm_6614.1	chr1	75505597	75505797	-	1	NA	NA	NA	755	NM_178884	98733	Mm.236454	NM_178884	ENSMUSG00000026211	Obsl1	AW822216	obscurin-like 1	protein-coding	0.090000	0.666667	
mm_81520.1	chr9	110052031	110052231	+	1	NA	NA	NA	110	NM_001311164	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.050000	0.562189	2(CTCTCTAAAGGC,-,0.00)
mm_57899.1	chr6	131385742	131385942	-	1	NA	NA	NA	2608	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.015000	0.417910	
mm_132382.1	chr16	34921999	34922199	+	1	NA	NA	NA	17230	NR_040536	76649	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.040000	0.601990	
mm_140204.1	chr17	83775389	83775589	+	1	NA	NA	NA	69326	NM_001171052	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.030000	0.502488	
mm_93869.1	chr10	123147271	123147471	-	1	NA	NA	NA	49648	NM_027604	14479	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	0.015000	0.512438	-44(AGCTATAAATAG,-,0.00)
mm_154845.1	chrX	20385074	20385274	+	1	NA	NA	NA	20693	NR_110967	19889	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	0.000000	0.383085	
mm_38538.1	chr4	141576720	141576920	-	1	NA	NA	NA	23104	NM_001163256	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.005000	0.417910	
mm_3250.1	chr1	136131369	136131569	+	1	NA	NA	NA	68	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.125000	0.751244	
mm_2044.1	chr1	87326902	87327102	+	1	NA	NA	NA	4	NM_001110212	227331	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	0.105000	0.666667	
mm_139611.1	chr17	57358482	57358682	+	1	NA	NA	NA	-104	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.552239	
mm_85253.1	chr9	99304611	99304811	-	1	NA	NA	NA	53819	NM_177775	272636	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0.000000	0.497512	
mm_152937.1	chr19	28680074	28680274	-	1	NA	NA	NA	-97	NM_175459	226075	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	0.110000	0.751244	
mm_144491.1	chr18	24205520	24205720	+	1	NA	NA	NA	276	NM_013814	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.155000	0.800995	
mm_165964.1	chr4	94739920	94740120	+	1	NA	NA	NA	731	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	0.000000	0.288557	
mm_135572.1	chr16	50330902	50331102	-	1	NA	NA	NA	101387	NM_027444	70508	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.010000	0.457711	
mm_141927.1	chr17	35027569	35027769	-	1	NA	NA	NA	347	NR_028258	78376	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	0.005000	0.487562	9(GCCCTTTAGAGG,-,0.00),10(CCCTTTAGAGGA,+,0.00)
mm_126770.1	chr15	86058724	86058924	+	1	NA	NA	NA	97	NM_001205353	223752	Mm.24442	NM_172611	ENSMUSG00000035900	Gramd4	9930016O13	GRAM domain containing 4	protein-coding	0.195000	0.855721	
mm_120245.1	chr14	62992285	62992485	+	1	NA	NA	NA	-5692	NM_001039125	654465	Mm.424929	NM_001039125	ENSMUSG00000075573	Defb47	Defb41|EG654465	defensin beta 47	protein-coding	0.010000	0.492537	
mm_103771.1	chr11	82006752	82006952	-	1	NA	NA	NA	-28725	NM_011333	20296	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.015000	0.507463	
mm_172346.1	chr7	11345481	11345681	+	1	NA	NA	NA	-52334	NM_001110316	665902	Mm.425380	NM_001110316	ENSMUSG00000070828	Zscan4f	C330039H09Rik	zinc finger and SCAN domain containing 4F	protein-coding	0.050000	0.532338	-31(GTCTATTTAAGG,-,0.00),-29(CTATTTAAGGAC,+,0.00)
mm_167693.1	chr9	87739918	87740118	-	1	NA	NA	NA	-8758	NM_023814	76365	Mm.158789	NM_023814	ENSMUSG00000032419	Tbx18	2810012F10Rik|2810404D13Rik	T-box18	protein-coding	0.070000	0.572139	
mm_125747.1	chr15	73727602	73727802	+	1	NA	NA	NA	2772	NM_001166388	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.005000	0.482587	16(CCCTTGAAAGGG,-,0.00)
mm_107566.1	chr12	44269086	44269286	+	1	NA	NA	NA	32	NM_026164	67452	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	0.110000	0.706468	
mm_82688.1	chr9	22307568	22307768	-	1	NA	NA	NA	-30	NM_145612	235050	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0.110000	0.656716	
mm_90814.1	chr10	7906231	7906431	-	1	NA	NA	NA	49792	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.020000	0.457711	
mm_74438.1	chr8	3754657	3754857	-	1	NA	NA	NA	-5773	NM_133238	170786	Mm.32510	NM_133238	ENSMUSG00000031494	Cd209a	CD209|CDSIGN|CIRE|DC-SIGN|DC-SIGN1|Dcsign|SIGN-R1|SIGNR5	CD209a antigen	protein-coding	0.025000	0.442786	
mm_494.1	chr1	36781004	36781204	+	1	NA	NA	NA	2120	NM_001289612	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.045000	0.621891	
mm_84071.1	chr9	58201533	58201733	-	1	NA	NA	NA	82	NM_001161535	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.035000	0.527363	
mm_49032.1	chr6	4759713	4759913	+	1	NA	NA	NA	12507	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.005000	0.308458	
mm_172095.1	chr6	24196487	24196687	-	1	NA	NA	NA	-28495	NM_019481	55961	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0.015000	0.477612	
mm_142037.1	chr17	35262750	35262950	-	1	NA	NA	NA	-244	NM_010380	14964	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	0.025000	0.582090	
mm_143911.1	chr17	85612254	85612454	-	1	NA	NA	NA	6042	NR_038084	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.030000	0.577114	
mm_140692.1	chr17	13760315	13760515	-	1	NA	NA	NA	-126	NM_010806	17356	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.220000	0.820896	
mm_97893.1	chr11	83302720	83302920	+	1	NA	NA	NA	123	NM_001035854	71770	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979	adaptor-related protein complex 2, beta 1 subunit	protein-coding	0.080000	0.651741	
mm_110996.1	chr12	78298981	78299181	-	1	NA	NA	NA	72426	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.005000	0.437811	-42(GCCCCTAAAAAG,-,0.00)
mm_160355.1	chr8	21528930	21529130	+	1	NA	NA	NA	0	NM_001177521	100041890	Mm.423382	NM_001177521	ENSMUSG00000094818	Defa32	ENSMUSG00000065957|Gm15308|OTTMUSG00000019860	defensin, alpha, 32	protein-coding	0.005000	0.512438	-32(CCCTATAAATGT,-,0.00)
mm_156868.1	chrX	164442071	164442271	+	1	NA	NA	NA	5177	NM_001313737	68854	Mm.33225	NM_026853	ENSMUSG00000031382	Asb11	1110067L12Rik|1600009D24Rik	ankyrin repeat and SOCS box-containing 11	protein-coding	0.020000	0.532338	-32(CATTTTAAAGAC,+,0.00)
mm_88739.1	chr10	80265021	80265221	+	1	NA	NA	NA	130	NM_133188	70248	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	0.155000	0.771144	
mm_135380.1	chr16	44139543	44139743	-	1	NA	NA	NA	-148	NM_001347239	72117	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	0.055000	0.621891	
mm_121771.1	chr14	19875134	19875334	-	1	NA	NA	NA	36309	NR_105025	52512	Mm.483998	NR_105025		D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.010000	0.427861	-100(CTCTTTTAGAGG,-,0.00),-99(TCTTTTAGAGGG,+,0.00)
mm_81228.1	chr9	107674768	107674968	+	1	NA	NA	NA	4724	NM_008140	14685	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.000000	0.527363	
mm_81825.1	chr9	118049980	118050180	+	1	NA	NA	NA	9558	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.010000	0.402985	
mm_108072.1	chr12	73941957	73942157	+	1	NA	NA	NA	-22473	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.005000	0.472637	
mm_69696.1	chr7	140036242	140036442	-	1	NA	NA	NA	8	NM_133755	74237	Mm.40888	NM_133755	ENSMUSG00000025474	Tubgcp2	1700022B05Rik	tubulin, gamma complex associated protein 2	protein-coding	0.125000	0.726368	
mm_34538.1	chr4	149497276	149497476	+	1	NA	NA	NA	12043	NM_026963	69151	Mm.464434	NM_026963	ENSMUSG00000028990	Lzic	1810030J04Rik|AW047580	leucine zipper and CTNNBIP1 domain containing	protein-coding	0.005000	0.388060	
mm_152458.1	chr19	10871532	10871732	-	1	NA	NA	NA	-1853	NM_133804	98170	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.025000	0.616915	
mm_161082.1	chr12	84396868	84397068	-	1	NA	NA	NA	3966	NM_001286058	12499	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0.020000	0.477612	
mm_92339.1	chr10	75834317	75834517	-	1	NA	NA	NA	464	NM_010361	14872	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.050000	0.562189	
mm_115524.1	chr13	5861172	5861372	-	1	NA	NA	NA	-217	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.090000	0.592040	-40(CTTCATTAAAGG,-,0.00),42(GGGTATATAAGG,-,0.00)
mm_36321.1	chr4	70307254	70307454	-	1	NA	NA	NA	103081	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.005000	0.497512	
mm_114253.1	chr13	56703296	56703496	+	1	NA	NA	NA	-272	NM_001164042	17129	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.190000	0.786070	
mm_4801.1	chr1	185210619	185210819	+	1	NA	NA	NA	6551	NM_001163754	98732	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	0.000000	0.308458	-49(GGATTTTTAAGC,-,0.00)
mm_158491.1	chrX	142327960	142328160	-	1	NA	NA	NA	-21862	NM_021487	66240	Mm.58507	NM_021487	ENSMUSG00000090122	Kcne1l	1500015C14Rik|Kcne5|Mink	potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	protein-coding	0.010000	0.388060	
mm_53357.1	chr6	129351367	129351567	+	1	NA	NA	NA	1223	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.000000	0.412935	
mm_138272.1	chr17	34604803	34605003	+	1	NA	NA	NA	-958	NM_001163379	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.035000	0.492537	
mm_168112.1	chr10	14802199	14802399	+	1	NA	NA	NA	42010	NM_008703	18101	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.000000	0.383085	
mm_84525.1	chr9	67043877	67044077	-	1	NA	NA	NA	-106	NM_001164253	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.110000	0.731343	
mm_134217.1	chr16	11253914	11254114	-	1	NA	NA	NA	311	NM_001130008	14852	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	0.110000	0.736318	
mm_90159.1	chr10	118866028	118866228	+	1	NA	NA	NA	2775	NM_001014390	69181	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.000000	0.452736	
mm_107036.1	chr12	13501145	13501345	+	1	NA	NA	NA	126401	NR_136761	102639399	Mm.122052	NR_136761		Gm35725	-	predicted gene, 35725	ncRNA	0.020000	0.497512	
mm_63752.1	chr7	131085280	131085480	+	1	NA	NA	NA	53304	NM_007769	12945	Mm.4138	NM_007769	ENSMUSG00000047517	Dmbt1	CRP|CRP-[a]|CRP-[b]|Crpd|DBMT1|gp300|p80	deleted in malignant brain tumors 1	protein-coding	0.000000	0.427861	
mm_65730.1	chr7	28381789	28381989	-	1	NA	NA	NA	-2661	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.025000	0.572139	
mm_43980.1	chr5	146261175	146261375	+	1	NA	NA	NA	29600	NM_153599	264064	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.095000	0.562189	
mm_16405.1	chr2	180034733	180034933	+	1	NA	NA	NA	7631	NM_001289476	26444	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	0.020000	0.611940	
mm_136177.1	chr16	88826045	88826245	-	1	NA	NA	NA	0	NM_013707	23927	Mm.3502	NM_013707	ENSMUSG00000074928	Krtap14	AA589630|Pmg1|mKAP13	keratin associated protein 14	protein-coding	0.020000	0.482587	-33(GGGTATATAAGT,-,0.00)
mm_30835.1	chr4	22035514	22035714	+	1	NA	NA	NA	104288	NM_175234	76132	Mm.159689	NM_175234	ENSMUSG00000028246	Faxc	6230409E13Rik|AW742931	failed axon connections homolog	protein-coding	0.010000	0.452736	
mm_92788.1	chr10	81302831	81303031	-	1	NA	NA	NA	9968	NM_001146687	18717	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.045000	0.606965	
mm_83669.1	chr9	49718643	49718843	-	1	NA	NA	NA	80326	NM_001081445	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding	0.000000	0.368159	-96(GAATATATAAGC,-,0.00)
mm_48156.1	chr5	137152213	137152413	-	1	NA	NA	NA	-36106	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.482587	
mm_10615.1	chr2	19300489	19300689	+	1	NA	NA	NA	-43728	NR_126563	108871	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.010000	0.522388	
mm_169821.1	chr16	22294899	22295099	+	1	NA	NA	NA	-28994	NM_001330555	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding	0.060000	0.616915	
mm_123649.1	chr14	69171712	69171912	-	1	NA	NA	NA	10	NM_010920	18092	Mm.390691	NM_010920	ENSMUSG00000044186	Nkx2-6	AV044928|Nkx-2.6|Nkx2.6|Tix|tinman	NK2 homeobox 6	protein-coding	0.035000	0.572139	
mm_57367.1	chr6	124769459	124769659	-	1	NA	NA	NA	114	NM_001302642	13807	Mm.3913	NM_013509	ENSMUSG00000004267	Eno2	AI837106|D6Ertd375e|Eno-2|NSE	enolase 2, gamma neuronal	protein-coding	0.125000	0.756219	-28(GGCTCTATAGGC,-,0.00)
mm_41344.1	chr5	90500302	90500502	+	1	NA	NA	NA	9688	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.005000	0.368159	
mm_80898.1	chr9	99855993	99856193	+	1	NA	NA	NA	20077	NM_011440	20669	Mm.261595	NM_011440	ENSMUSG00000053747	Sox14	-	SRY (sex determining region Y)-box 14	protein-coding	0.005000	0.512438	
mm_67985.1	chr7	100706179	100706379	-	1	NA	NA	NA	-423	NM_178764	319604	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0.025000	0.512438	
mm_142518.1	chr17	46270719	46270919	-	1	NA	NA	NA	12207	NM_001252475	74094	Mm.284594	NM_028751	ENSMUSG00000012296	Tjap1	0610041D19Rik|AI415281|AW121008|Pilt|Tjp4	tight junction associated protein 1	protein-coding	0.040000	0.601990	
mm_81971.1	chr9	120970645	120970845	+	1	NA	NA	NA	15659	NR_106058	102465661		NR_106058	ENSMUSG00000106193	Mir7090	mmu-mir-7090	microRNA 7090	ncRNA	0.000000	0.407960	
mm_154305.1	chr19	61226195	61226395	-	1	NA	NA	NA	2123	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.100000	0.651741	
mm_15322.1	chr2	155750712	155750912	+	1	NA	NA	NA	-405	NM_011171	19124	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	0.015000	0.378109	
mm_77161.1	chr8	111687122	111687322	-	1	NA	NA	NA	2452	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.030000	0.616915	
mm_116450.1	chr13	43171347	43171547	-	1	NA	NA	NA	54	NM_001252639	67046	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	0.130000	0.716418	
mm_78907.1	chr9	44772947	44773147	+	1	NA	NA	NA	38	NM_023831	76568	Mm.278597	NM_023831	ENSMUSG00000002031	Ift46	1500035H01Rik|AA408110|AI663846|R75047|c11orf2	intraflagellar transport 46	protein-coding	0.070000	0.572139	
mm_59423.1	chr7	27124560	27124760	+	1	NA	NA	NA	4705	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.015000	0.482587	
mm_26675.1	chr3	154796186	154796386	+	1	NA	NA	NA	85153	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.020000	0.487562	
mm_679.1	chr1	40490954	40491154	+	1	NA	NA	NA	-24308	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.005000	0.407960	
mm_21270.1	chr2	156862743	156862943	-	1	NA	NA	NA	102	NR_015591	74487	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA	0.090000	0.676617	
mm_56842.1	chr6	117612471	117612671	-	1	NA	NA	NA	139198	NR_045731	72263	Mm.443289	NR_045731	ENSMUSG00000099869	1700030F04Rik	-	RIKEN cDNA 1700030F04 gene	ncRNA	0.020000	0.587065	
mm_42473.1	chr5	115455249	115455449	+	1	NA	NA	NA	-10917	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.020000	0.318408	
mm_161067.1	chr12	76031546	76031746	+	1	NA	NA	NA	122543	NR_039560	100628610		NR_039560	ENSMUSG00000092922	Mir5101	mmu-mir-5101|mu-mir-5101	microRNA 5101	ncRNA	0.020000	0.542289	
mm_17270.1	chr2	26091684	26091884	-	1	NA	NA	NA	612	NM_001037098	67991	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.055000	0.676617	
mm_165981.1	chr4	103290802	103291002	-	1	NA	NA	NA	-39	NM_001163494	70941	Mm.158501	NM_027612	ENSMUSG00000028520	4921539E11Rik	-	RIKEN cDNA 4921539E11 gene	protein-coding	0.010000	0.467662	
mm_128895.1	chr15	73242922	73243122	-	1	NA	NA	NA	11860	NR_029561	387169		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA	0.035000	0.467662	
mm_136092.1	chr16	85034300	85034500	-	1	NA	NA	NA	62189	NR_045889	100038614	Mm.441351	NR_045889		Gm10791	ENSMUSG00000074933	predicted gene 10791	ncRNA	0.005000	0.457711	
mm_87603.1	chr10	57650900	57651100	+	1	NA	NA	NA	19	NM_001190402	18768	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.005000	0.437811	
mm_51354.1	chr6	72558580	72558780	+	1	NA	NA	NA	9033	NM_001271395	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.000000	0.502488	
mm_24656.1	chr3	94443230	94443430	+	1	NA	NA	NA	-6	NM_030116	78523	Mm.218515	NM_030116	ENSMUSG00000028140	Mrpl9	8030480E20Rik|AA409733|C330013D18Rik|L9mt	mitochondrial ribosomal protein L9	protein-coding	0.080000	0.676617	
mm_34151.1	chr4	139376609	139376809	+	1	NA	NA	NA	-3950	NM_001160319	69116	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0.010000	0.492537	-7(TTTTTTAAAGAC,+,0.00)
mm_110010.1	chr12	16583897	16584097	-	1	NA	NA	NA	5773	NM_015763	14245	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188	lipin 1	protein-coding	0.005000	0.442786	
mm_77473.1	chr8	122432809	122433009	-	1	NA	NA	NA	31	NM_001301284	13057	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.065000	0.681592	
mm_64759.1	chr7	4844903	4845103	-	1	NA	NA	NA	-307	NM_172737	232813	Mm.44666	NM_172737	ENSMUSG00000053550	Shisa7	ckamp59	shisa family member 7	protein-coding	0.030000	0.542289	
mm_99680.1	chr11	105994557	105994757	+	1	NA	NA	NA	-18	NM_001101453	217246	Mm.296699	NM_001101453	ENSMUSG00000101605	Ace3	EG217246	angiotensin I converting enzyme (peptidyl-dipeptidase A) 3	protein-coding	0.005000	0.502488	
mm_104691.1	chr11	97782315	97782515	-	1	NA	NA	NA	24	NM_022891	65019	Mm.140380	NM_022891	ENSMUSG00000071415	Rpl23	2810009A01Rik	ribosomal protein L23	protein-coding	0.080000	0.611940	
mm_49326.1	chr6	21214740	21214940	+	1	NA	NA	NA	-1269	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.100000	0.666667	
mm_62105.1	chr7	96295845	96296045	+	1	NA	NA	NA	-9722	NR_105818	102465210		NR_105818	ENSMUSG00000099030	Mir6394	Gm27929|mmu-mir-6394	microRNA 6394	ncRNA	0.000000	0.407960	
mm_21060.1	chr2	152728192	152728392	-	1	NA	NA	NA	-7959	NM_010495	15901	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	0.015000	0.572139	
mm_101975.1	chr11	50325982	50326182	-	1	NA	NA	NA	-409	NM_001110500	12330	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	0.040000	0.562189	
mm_156690.1	chrX	159414585	159414785	+	1	NA	NA	NA	113	NM_001313751	78283	Mm.160079	NM_001081124	ENSMUSG00000041020	Map7d2	1600028E09Rik|2900002G04Rik|5330432J06Rik|C030036K04Rik|Mtap7d2	MAP7 domain containing 2	protein-coding	0.185000	0.815920	
mm_27850.1	chr3	79156619	79156819	-	1	NA	NA	NA	-10844	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.318408	
mm_166866.1	chr7	24593758	24593958	+	1	NA	NA	NA	-6217	NM_001033205	101544	Mm.20117	NM_001033205	ENSMUSG00000066721	Zfp575	AI326876|Znf575	zinc finger protein 575	protein-coding	0.090000	0.691542	-32(CCTTTAAGGCAG,+,0.00)
mm_12174.1	chr2	62686053	62686253	+	1	NA	NA	NA	21826	NM_145523	227960	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0.015000	0.348259	
mm_107998.1	chr12	73336704	73336904	+	1	NA	NA	NA	49956	NM_001037717	625098	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0.000000	0.363184	
mm_134889.1	chr16	29541297	29541497	-	1	NA	NA	NA	86	NM_172613	224079	Mm.54954	NM_172613	ENSMUSG00000038094	Atp13a4	4631413J11Rik|4832416L12|9330174J19Rik	ATPase type 13A4	protein-coding	0.035000	0.537313	
mm_162484.1	chr1	135155357	135155557	+	1	NA	NA	NA	8623	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.005000	0.567164	
mm_117947.1	chr13	99435168	99435368	-	1	NA	NA	NA	-22442	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.025000	0.537313	
mm_82892.1	chr9	32541573	32541773	-	1	NA	NA	NA	-221	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.050000	0.557214	
mm_163154.1	chr11	83604871	83605071	+	1	NA	NA	NA	-11884	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.010000	0.497512	
mm_71299.1	chr8	41240901	41241101	+	1	NA	NA	NA	1242	NM_023662	18536	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	0.055000	0.527363	
mm_100364.1	chr11	118988083	118988283	+	1	NA	NA	NA	-5	NM_001030291	238011	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	0.025000	0.582090	
mm_154166.1	chr19	58673077	58673277	-	1	NA	NA	NA	2812	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.020000	0.432836	
mm_89076.1	chr10	83097989	83098189	+	1	NA	NA	NA	112592	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.010000	0.427861	
mm_157939.1	chrX	85738626	85738826	-	1	NA	NA	NA	38093	NM_001294140	14933	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	0.005000	0.378109	-16(CGCTTTATATGC,-,0.00)
mm_54528.1	chr6	36714949	36715149	-	1	NA	NA	NA	96312	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.005000	0.303483	
mm_27631.1	chr3	61363022	61363222	-	1	NA	NA	NA	-1385	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.040000	0.567164	
mm_168729.1	chr12	113381560	113381760	-	1	NA	NA	NA	-107905	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.055000	0.527363	
mm_14774.1	chr2	145819904	145820104	+	1	NA	NA	NA	33888	NM_028724	74030	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.000000	0.373134	
mm_168301.1	chr11	106252142	106252342	-	1	NA	NA	NA	3560	NM_025310	56095	Mm.29795	NM_025310	ENSMUSG00000020706	Ftsj3	AA537063|AU045295|C79843|D11Ertd400e|Epcs3	FtsJ RNA methyltransferase homolog 3 (E. coli)	protein-coding	0.045000	0.567164	
mm_13292.1	chr2	101991849	101992049	+	1	NA	NA	NA	105687	NM_029635	76501	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0.000000	0.477612	
mm_57292.1	chr6	124433664	124433864	-	1	NA	NA	NA	-18697	NM_001277805	19305	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1R|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0.020000	0.572139	
mm_62426.1	chr7	101345873	101346073	+	1	NA	NA	NA	-2096	NM_001040111	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.030000	0.542289	
mm_151211.1	chr19	53621744	53621944	+	1	NA	NA	NA	21448	NM_007790	13006	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.050000	0.542289	
mm_3628.1	chr1	152791800	152792000	+	1	NA	NA	NA	-8253	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.015000	0.432836	
mm_155557.1	chrX	75127025	75127225	+	1	NA	NA	NA	3891	NM_008621	17524	Mm.391267	NM_008621	ENSMUSG00000031402	Mpp1	55kDa|C130070C03Rik|p55	membrane protein, palmitoylated	protein-coding	0.000000	0.368159	
mm_70038.1	chr7	142577390	142577590	-	1	NA	NA	NA	-343	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.010000	0.552239	-71(GCTCTTAGAGAG,+,0.00)
mm_41204.1	chr5	88520498	88520698	+	1	NA	NA	NA	7299	NM_152839	16069	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	0.010000	0.293532	
mm_36857.1	chr4	106859283	106859483	-	1	NA	NA	NA	-52087	NM_198438	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.010000	0.472637	80(CCTTTTAAATAA,+,0.00)
mm_121370.1	chr14	117826795	117826995	+	1	NA	NA	NA	126952	NR_105747	102465148		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0.020000	0.437811	
mm_102791.1	chr11	68468176	68468376	-	1	NA	NA	NA	-34743	NM_001004435	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.010000	0.512438	43(CCCTTTATAAAA,-,0.00)
mm_78334.1	chr9	25253662	25253862	+	1	NA	NA	NA	1323	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.000000	0.313433	-35(CTTTTTATAGTA,+,0.00)
mm_5363.1	chr1	25829934	25830134	-	1	NA	NA	NA	-327	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.090000	0.696517	
mm_49935.1	chr6	39527443	39527643	+	1	NA	NA	NA	30291	NM_172477	209773	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.020000	0.562189	
mm_150368.1	chr19	34649799	34649999	+	1	NA	NA	NA	9010	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.005000	0.432836	-51(GCCTATATATGA,-,0.00)
mm_107423.1	chr12	35050896	35051096	+	1	NA	NA	NA	3807	NM_001014973	217463	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0.005000	0.318408	
mm_37422.1	chr4	122885766	122885966	-	1	NA	NA	NA	191	NM_007598	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.080000	0.641791	
mm_13524.1	chr2	110017785	110017985	+	1	NA	NA	NA	68	NM_026613	68201	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	0.130000	0.691542	
mm_72807.1	chr8	87472803	87473003	+	1	NA	NA	NA	91	NR_033430	100040294	Mm.213632	NR_033430	ENSMUSG00000097248	Gm2694	C230036H16Rik|linc1582	predicted gene 2694	ncRNA	0.140000	0.741294	
mm_131830.1	chr16	22957376	22957576	+	1	NA	NA	NA	6404	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.005000	0.432836	-50(GCTTTTATGCTC,+,0.00)
mm_155333.1	chrX	66649285	66649485	+	1	NA	NA	NA	67	NM_001161431	245450	Mm.336081	NM_198863	ENSMUSG00000036790	Slitrk2	A930040J07	SLIT and NTRK-like family, member 2	protein-coding	0.065000	0.666667	
mm_139010.1	chr17	45570422	45570622	+	1	NA	NA	NA	2739	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.015000	0.462687	
mm_54939.1	chr6	48448575	48448775	-	1	NA	NA	NA	446	NM_173428	243369	Mm.25039	NM_173428	ENSMUSG00000029797	Sspo	C79529|Scospondin	SCO-spondin	protein-coding	0.020000	0.592040	
mm_159732.1	chr5	54105248	54105448	+	1	NA	NA	NA	106825	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.030000	0.577114	
mm_16545.1	chr2	181693684	181693884	+	1	NA	NA	NA	26	NM_001291206	56470	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0.080000	0.626866	
mm_123803.1	chr14	70520569	70520769	-	1	NA	NA	NA	-409	NR_033241	12153	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.050000	0.567164	82(GTGTCTAAGAGG,-,0.00)
mm_151663.1	chr19	4139528	4139728	-	1	NA	NA	NA	-19	NM_144532	73660	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	0.005000	0.547264	
mm_42415.1	chr5	115237946	115238146	+	1	NA	NA	NA	2195	NM_026398	117109	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	0.140000	0.716418	
mm_149362.1	chr19	11292315	11292515	+	1	NA	NA	NA	-8602	NM_183190	269063	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	0.010000	0.542289	
mm_8575.1	chr1	155751629	155751829	-	1	NA	NA	NA	-9702	NM_010712	16872	Mm.103624	NM_010712	ENSMUSG00000026468	Lhx4	A330062J17Rik|Gsh-4|Gsh4	LIM homeobox protein 4	protein-coding	0.010000	0.582090	
mm_37225.1	chr4	117929402	117929602	-	1	NA	NA	NA	261	NM_001284191	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.085000	0.736318	
mm_1178.1	chr1	61638780	61638980	+	1	NA	NA	NA	56	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0.130000	0.786070	-94(GCCCCTTTAAGA,-,0.00),-92(CCCTTTAAGAGC,+,0.00),-92(CCCTTTAAGAGC,-,0.00),-91(CCTTTAAGAGCC,+,0.00)
mm_74666.1	chr8	13677416	13677616	-	1	NA	NA	NA	71	NM_009025	19414	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.125000	0.721393	
mm_2917.1	chr1	132014429	132014629	+	1	NA	NA	NA	6924	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.040000	0.507463	
mm_161195.1	chr13	54783866	54784066	+	1	NA	NA	NA	-32	NM_001286179	218268	Mm.425821	NM_001033269	ENSMUSG00000074895	Eif4e1b	Eif4eloo|Gm273	eukaryotic translation initiation factor 4E family member 1B	protein-coding	0.010000	0.562189	
mm_155036.1	chrX	42075510	42075710	+	1	NA	NA	NA	4368	NM_001301641	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.010000	0.338308	
mm_97071.1	chr11	72992544	72992744	+	1	NA	NA	NA	-6501	NM_008771	18436	Mm.25722	NM_008771	ENSMUSG00000020787	P2rx1	AI323649|BB122383|P2x|Pdcd3|RP-2	purinergic receptor P2X, ligand-gated ion channel, 1	protein-coding	0.015000	0.432836	
mm_78251.1	chr9	21723541	21723741	+	1	NA	NA	NA	65	NM_010700	16835	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.075000	0.601990	
mm_97414.1	chr11	77982546	77982746	+	1	NA	NA	NA	-170	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0.145000	0.751244	
mm_93101.1	chr10	89745716	89745916	-	1	NA	NA	NA	825	NM_029166	75089	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0.065000	0.492537	
mm_124865.1	chr15	10177449	10177649	+	1	NA	NA	NA	311	NM_011169	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.015000	0.472637	-49(CCTTATAAAACT,+,0.00)
mm_73399.1	chr8	105855018	105855218	+	1	NA	NA	NA	15	NM_021513	59016	Mm.286598	NM_021513	ENSMUSG00000036442	Thap11	2810036E22Rik|AB041579|CTG-B43a|CTG-B45d|Ronin	THAP domain containing 11	protein-coding	0.125000	0.711443	
mm_121258.1	chr14	103062172	103062372	+	1	NA	NA	NA	-7944	NM_001033242	211286	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0.015000	0.402985	
mm_104133.1	chr11	86838624	86838824	-	1	NA	NA	NA	-31064	NM_026191	67487	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.005000	0.412935	
mm_33452.1	chr4	130681146	130681346	+	1	NA	NA	NA	17887	NM_001159605	80912	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0.010000	0.348259	
mm_6676.1	chr1	80385279	80385479	-	1	NA	NA	NA	-44689	NM_016716	26554	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.010000	0.512438	
mm_49842.1	chr6	38352428	38352628	+	1	NA	NA	NA	2075	NM_028864	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.025000	0.442786	
mm_19592.1	chr2	102076329	102076529	-	1	NA	NA	NA	110031	NM_178886	241576	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.005000	0.532338	
mm_84182.1	chr9	60134620	60134820	-	1	NA	NA	NA	6500	NM_172444	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.005000	0.358209	
mm_82092.1	chr9	123052642	123052842	+	1	NA	NA	NA	18001	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.010000	0.537313	
mm_19847.1	chr2	113708450	113708650	-	1	NA	NA	NA	0	NR_040614	75166	Mm.410811	NR_040614	ENSMUSG00000084798	4930533B01Rik	-	RIKEN cDNA 4930533B01 gene	ncRNA	0.005000	0.398010	
mm_97884.1	chr11	83291596	83291796	+	1	NA	NA	NA	-3	NR_028363	613254	Mm.383758	NR_028363	ENSMUSG00000093483	AA465934	-	expressed sequence AA465934	ncRNA	0.080000	0.636816	
mm_116196.1	chr13	31674338	31674538	-	1	NA	NA	NA	48622	NM_010225	14238	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	0.000000	0.293532	
mm_142633.1	chr17	47414588	47414788	-	1	NA	NA	NA	23	NM_001172091	75462	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.010000	0.462687	3(CTCTCTAAATGC,-,0.00)
mm_171039.1	chr2	93819044	93819244	+	1	NA	NA	NA	3424	NM_010163	14043	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	0.025000	0.492537	
mm_76990.1	chr8	107063018	107063218	-	1	NA	NA	NA	2526	NM_025458	66269	Mm.23032	NM_025458	ENSMUSG00000031919	Tmed6	1810015P03Rik|1810018I24Rik	transmembrane p24 trafficking protein 6	protein-coding	0.000000	0.427861	
mm_76142.1	chr8	81854573	81854773	-	1	NA	NA	NA	512111	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.015000	0.472637	
mm_50329.1	chr6	48411493	48411693	+	1	NA	NA	NA	16007	NM_001347153	77827	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	0.000000	0.487562	
mm_143261.1	chr17	65613435	65613635	-	1	NA	NA	NA	20	NM_013933	30960	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.125000	0.761194	
mm_164100.1	chr15	18820651	18820851	+	1	NA	NA	NA	422	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0.005000	0.358209	6(GTTTTTAAAGTC,+,0.00)
mm_6566.1	chr1	75180168	75180368	-	1	NA	NA	NA	124	NM_023732	74104	Mm.28663	NM_023732	ENSMUSG00000026198	Abcb6	1200005B17Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 6	protein-coding	0.090000	0.656716	
mm_83147.1	chr9	40456026	40456226	-	1	NA	NA	NA	-362	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.060000	0.616915	
mm_172871.1	chr9	4259492	4259692	+	1	NA	NA	NA	49902	NR_136941	67618	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0.035000	0.452736	-33(GGGTATTTAAGC,-,0.00)
mm_57540.1	chr6	126644697	126644897	-	1	NA	NA	NA	1004	NM_010595	16485	Mm.40424	NM_010595	ENSMUSG00000047976	Kcna1	AI840627|Kca1-1|Kv1.1|MBK1|Mk-1|Shak|mceph	potassium voltage-gated channel, shaker-related subfamily, member 1	protein-coding	0.100000	0.691542	
mm_3600.1	chr1	151571356	151571556	+	1	NA	NA	NA	83	NM_022018	63913	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.070000	0.661692	
mm_6316.1	chr1	71600336	71600536	-	1	NA	NA	NA	43280	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.025000	0.492537	
mm_161551.1	chr16	10788480	10788680	-	1	NA	NA	NA	75	NM_013694	21959	Mm.206798	NM_013694	ENSMUSG00000043050	Tnp2	TP2|Tp-2	transition protein 2	protein-coding	0.025000	0.646766	
mm_119885.1	chr14	54898305	54898505	+	1	NA	NA	NA	4262	NM_019402	54196	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	0.015000	0.592040	
mm_150491.1	chr19	39011041	39011241	+	1	NA	NA	NA	4122	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.000000	0.407960	
mm_82032.1	chr9	121950926	121951126	+	1	NA	NA	NA	6	NM_001199927	245050	Mm.71062	NM_177743	ENSMUSG00000038233	Fam198a	C730027P07Rik	family with sequence similarity 198, member A	protein-coding	0.020000	0.597015	
mm_143814.1	chr17	83831607	83831807	-	1	NA	NA	NA	15083	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.015000	0.577114	
mm_160041.1	chr6	137648242	137648442	-	1	NA	NA	NA	943	NM_001271588	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.025000	0.507463	
mm_29032.1	chr3	102167460	102167660	-	1	NA	NA	NA	37133	NM_177545	229658	Mm.118004	NM_177545	ENSMUSG00000027860	Vangl1	Kitenin|Lpp2|Stb2|Stbm	vang-like 1 (van gogh, Drosophila)	protein-coding	0.010000	0.492537	1(TCATTTAAAGGA,+,0.00)
mm_172705.1	chr8	65591496	65591696	+	1	NA	NA	NA	-26444	NM_001293784	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.005000	0.492537	
mm_18409.1	chr2	60553157	60553357	-	1	NA	NA	NA	51	NM_008867	18779	Mm.5092	NM_008867	ENSMUSG00000054580	Pla2r1	Pla2-r|Pla2g1br|Pla2r	phospholipase A2 receptor 1	protein-coding	0.055000	0.601990	
mm_8491.1	chr1	153844044	153844244	-	1	NA	NA	NA	-3	NM_001243223	240816	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	0.040000	0.532338	
mm_10611.1	chr2	19049963	19050163	+	1	NA	NA	NA	51744	NR_024323	74629	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0.030000	0.497512	-95(TCATTTTAAAGG,-,0.00),-94(CATTTTAAAGGG,+,0.00)
mm_112418.1	chr13	4048916	4049116	+	1	NA	NA	NA	-10575	NM_134072	105387	Mm.26838	NM_134072	ENSMUSG00000033715	Akr1c14	9030611N15Rik|AW557061	aldo-keto reductase family 1, member C14	protein-coding	0.005000	0.368159	
mm_2101.1	chr1	87803772	87803972	+	1	NA	NA	NA	192	NM_009118	20215	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	0.020000	0.567164	-70(GTTTTTAGACAC,+,0.00)
mm_147068.1	chr18	35214856	35215056	-	1	NA	NA	NA	68	NM_178005	107065	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0.040000	0.497512	
mm_128894.1	chr15	73185236	73185436	-	1	NA	NA	NA	-389	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.125000	0.686567	
mm_49646.1	chr6	30805649	30805849	+	1	NA	NA	NA	64450	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.477612	
mm_84811.1	chr9	77347798	77347998	-	1	NA	NA	NA	-28	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.030000	0.462687	-52(ATCTATAAATGG,-,0.00)
mm_122833.1	chr14	54723175	54723375	-	1	NA	NA	NA	-11101	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.010000	0.577114	-12(CTCTCTTAAGGG,-,0.00)
mm_4823.1	chr1	185454822	185455022	+	1	NA	NA	NA	74	NM_001033286	226781	Mm.227117	NM_001033286	ENSMUSG00000026614	Slc30a10	E130106K10Rik|Gm212	solute carrier family 30, member 10	protein-coding	0.060000	0.701493	31(AAGCATAAAAGG,-,0.00)
mm_100482.1	chr11	120232869	120233069	+	1	NA	NA	NA	22	NM_198423	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.060000	0.537313	
mm_66592.1	chr7	45422380	45422580	-	1	NA	NA	NA	1534	NM_008497	16866	Mm.57061	NM_008497	ENSMUSG00000100916	Lhb	Gm29035|LH|LH-B|LSH-B|LSH-beta	luteinizing hormone beta	protein-coding	0.040000	0.592040	
mm_87295.1	chr10	42533055	42533255	+	1	NA	NA	NA	31101	NM_017472	54198	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.015000	0.502488	38(TCCTTTTAGAGG,-,0.00),39(CCTTTTAGAGGA,+,0.00)
mm_140251.1	chr17	84187004	84187204	+	1	NA	NA	NA	843	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.070000	0.631841	
mm_108573.1	chr12	84970827	84971027	+	1	NA	NA	NA	-3	NM_028632	73736	Mm.341848	NM_028632	ENSMUSG00000021243	Fcf1	1110008B24Rik	FCF1 rRNA processing protein	protein-coding	0.085000	0.572139	
mm_167403.1	chr8	103802026	103802226	-	1	NA	NA	NA	198327	NR_045730	71058	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0.030000	0.537313	
mm_80816.1	chr9	96619088	96619288	+	1	NA	NA	NA	12315	NM_053268	114713	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.005000	0.457711	
mm_111998.1	chr12	110696341	110696541	-	1	NA	NA	NA	-46	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.140000	0.736318	
mm_79470.1	chr9	56864962	56865162	+	1	NA	NA	NA	-42	NM_139001	121021	Mm.41329	NM_139001	ENSMUSG00000032911	Cspg4	4732461B14Rik|AN2|NG2	chondroitin sulfate proteoglycan 4	protein-coding	0.085000	0.631841	
mm_108193.1	chr12	76773677	76773877	+	1	NA	NA	NA	8204	NM_206534	211151	Mm.80970	NM_206534	ENSMUSG00000090258	Churc1	1700030P15Rik|My015|chch	churchill domain containing 1	protein-coding	0.005000	0.353234	
mm_96122.1	chr11	60775093	60775293	+	1	NA	NA	NA	2172	NM_009410	21975	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0.000000	0.442786	
mm_21268.1	chr2	156857030	156857230	-	1	NA	NA	NA	5815	NR_015591	74487	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA	0.000000	0.393035	
mm_171383.1	chr4	119695295	119695495	+	1	NA	NA	NA	-36450	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.000000	0.507463	
mm_24072.1	chr3	87919569	87919769	+	1	NA	NA	NA	125	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.070000	0.542289	
mm_58777.1	chr7	16061715	16061915	+	1	NA	NA	NA	-10030	NM_001347559	666528	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.165000	0.800995	
mm_158076.1	chrX	101264821	101265021	-	1	NA	NA	NA	-929	NM_001317221	245536	Mm.212463	NM_001033362	ENSMUSG00000090141	Gm614	-	predicted gene 614	protein-coding	0.020000	0.562189	
mm_48283.1	chr5	138171715	138171915	-	1	NA	NA	NA	47	NM_008568	17220	Mm.378965	NM_008568	ENSMUSG00000029730	Mcm7	AI747533|Mcmd7|mCDC47	minichromosome maintenance complex component 7	protein-coding	0.110000	0.577114	
mm_86812.1	chr10	20348271	20348471	+	1	NA	NA	NA	552	NM_027930	71804	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0.025000	0.343284	
mm_82611.1	chr9	21616361	21616561	-	1	NA	NA	NA	292	NM_001174078	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.115000	0.711443	
mm_30295.1	chr3	148990440	148990640	-	1	NA	NA	NA	-35905	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.115000	0.646766	
mm_135165.1	chr16	35872492	35872692	-	1	NA	NA	NA	-1210	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.025000	0.547264	
mm_113775.1	chr13	44896332	44896532	+	1	NA	NA	NA	105664	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.045000	0.631841	
mm_91513.1	chr10	37138449	37138649	-	1	NA	NA	NA	377	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.075000	0.621891	
mm_87084.1	chr10	29535022	29535222	+	1	NA	NA	NA	745	NM_028351	72780	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0.005000	0.487562	
mm_31415.1	chr4	48049846	48050046	+	1	NA	NA	NA	-1300	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.010000	0.482587	
mm_105472.1	chr11	105936210	105936410	-	1	NA	NA	NA	7837	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.010000	0.582090	
mm_68685.1	chr7	119184509	119184709	-	1	NA	NA	NA	-235	NM_001024138	209776	Mm.300632	NM_001024138	ENSMUSG00000066197	Gpr139	GPRg1|Gm495|PGR3	G protein-coupled receptor 139	protein-coding	0.040000	0.626866	
mm_147362.1	chr18	43393102	43393302	-	1	NA	NA	NA	175	NM_009468	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.100000	0.696517	
mm_94915.1	chr11	29463584	29463784	+	1	NA	NA	NA	51349	NM_026465	67939	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0.015000	0.497512	
mm_132291.1	chr16	33251336	33251536	+	1	NA	NA	NA	-20	NM_080557	69150	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	0.075000	0.696517	
mm_121256.1	chr14	103058179	103058379	+	1	NA	NA	NA	11267	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.005000	0.507463	
mm_95313.1	chr11	46389625	46389825	+	1	NA	NA	NA	-210	NM_001281965	16428	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	0.005000	0.417910	
mm_88931.1	chr10	81257391	81257591	+	1	NA	NA	NA	192	NM_001285853	17179	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0.090000	0.681592	
mm_82411.1	chr9	14780397	14780597	-	1	NA	NA	NA	2467	NM_019683	56503	Mm.395005	NM_019683	ENSMUSG00000031931	Ankrd49	AW060934|C86108|Gbif	ankyrin repeat domain 49	protein-coding	0.000000	0.462687	
mm_10825.1	chr2	24385049	24385249	+	1	NA	NA	NA	-248	NM_177611	215632	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.010000	0.507463	
mm_90046.1	chr10	115846223	115846423	+	1	NA	NA	NA	29039	NM_001168679	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	0.015000	0.422886	-93(GAGCATATATGG,-,0.00)
mm_117052.1	chr13	58392697	58392897	-	1	NA	NA	NA	89	NR_029825	723902		NR_029825	ENSMUSG00000065434	Mir7-1	Mir7a1|Mirn7-1|miR-7a1|mir-7a-1|mmu-miR-7a1|mmu-mir-7-1	microRNA 7-1	ncRNA	0.010000	0.417910	
mm_67997.1	chr7	100930833	100931033	-	1	NA	NA	NA	1228	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.075000	0.656716	
mm_119635.1	chr14	51884888	51885088	+	1	NA	NA	NA	146	NM_001029990	52535	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding	0.050000	0.592040	
mm_25366.1	chr3	107101482	107101682	+	1	NA	NA	NA	15	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.180000	0.796020	
mm_69662.1	chr7	139979916	139980116	-	1	NA	NA	NA	-1261	NM_001347613	381933	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0.020000	0.611940	
mm_22256.1	chr2	177329753	177329953	-	1	NA	NA	NA	-134889	NM_001177568	628308	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420|OTTMUSG00000016588	zinc finger protein 970	protein-coding	0.010000	0.497512	
mm_3644.1	chr1	152902810	152903010	+	1	NA	NA	NA	-264	NM_001005507	226517	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.120000	0.691542	
mm_2852.1	chr1	131674768	131674968	+	1	NA	NA	NA	-13827	NM_145509	226421	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0.015000	0.522388	72(CCCTAAAGAGGG,+,0.00)
mm_44161.1	chr5	150673685	150673885	+	1	NA	NA	NA	-42	NM_175310	100710	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	0.130000	0.741294	
mm_155674.1	chrX	90744837	90745037	+	1	NA	NA	NA	-147205	NM_001101450	212952	Mm.477436	NM_001101450	ENSMUSG00000091497	Gm44	-	predicted gene 44	protein-coding	0.005000	0.452736	
mm_161731.1	chr17	30005026	30005226	+	1	NA	NA	NA	39	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.160000	0.830846	
mm_99431.1	chr11	102429263	102429463	+	1	NA	NA	NA	-959	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.010000	0.522388	
mm_40610.1	chr5	64576076	64576276	+	1	NA	NA	NA	34523	NR_045078	100042198	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0.010000	0.527363	
mm_110852.1	chr12	73284883	73285083	-	1	NA	NA	NA	1728	NM_029580	76357	Mm.311344	NM_029580	ENSMUSG00000034442	Trmt5	2610027O18Rik|mKIAA1393	TRM5 tRNA methyltransferase 5	protein-coding	0.035000	0.492537	-54(GCTTTTAAGAAG,+,0.00)
mm_47267.1	chr5	121837551	121837751	-	1	NA	NA	NA	-792	NM_008507	16923	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.045000	0.631841	
mm_54834.1	chr6	42586059	42586259	-	1	NA	NA	NA	11213	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.010000	0.427861	
mm_142195.1	chr17	36951577	36951777	-	1	NA	NA	NA	115	NM_029632	76497	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	0.045000	0.587065	
mm_91559.1	chr10	39986519	39986719	-	1	NA	NA	NA	27	NM_001113385	215928	Mm.31744	NM_001001489	ENSMUSG00000038528	Mfsd4b5	Naglt1c	major facilitator superfamily domain containing 4B5	protein-coding	0.030000	0.572139	
mm_92385.1	chr10	76570344	76570544	-	1	NA	NA	NA	-5204	NM_080845	14317	Mm.36278	NM_080845	ENSMUSG00000001155	Ftcd	-	formiminotransferase cyclodeaminase	protein-coding	0.025000	0.527363	47(GCATTTAGGGAC,+,0.00)
mm_72023.1	chr8	70754615	70754815	+	1	NA	NA	NA	36	NM_001166399	19339	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0.085000	0.701493	
mm_45151.1	chr5	49291645	49291845	-	1	NA	NA	NA	-6086	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.000000	0.343284	
mm_12917.1	chr2	84937279	84937479	+	1	NA	NA	NA	733	NM_021398	58207	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	0.040000	0.462687	
mm_137668.1	chr17	28747345	28747545	+	1	NA	NA	NA	-21872	NM_011950	26415	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.020000	0.497512	
mm_144630.1	chr18	32939134	32939334	+	1	NA	NA	NA	193	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.140000	0.761194	
mm_89828.1	chr10	105842709	105842909	+	1	NA	NA	NA	1330	NM_025602	52713	Mm.339224	NM_025602	ENSMUSG00000019897	Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding	0.020000	0.507463	
mm_103550.1	chr11	77718647	77718847	-	1	NA	NA	NA	6546	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.020000	0.457711	
mm_114701.1	chr13	83524180	83524380	+	1	NA	NA	NA	-463	NM_001347567	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.030000	0.502488	
mm_147560.1	chr18	54988004	54988204	-	1	NA	NA	NA	2076	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.035000	0.537313	
mm_22947.1	chr3	32292243	32292443	+	1	NA	NA	NA	-73146	NR_027966	67576	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	0.010000	0.472637	52(GCCCTTTTAAGG,-,0.00),54(CCTTTTAAGGTT,+,0.00)
mm_16005.1	chr2	167363486	167363686	+	1	NA	NA	NA	-14408	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.000000	0.582090	
mm_127611.1	chr15	102459962	102460162	+	1	NA	NA	NA	892	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.015000	0.512438	
mm_65177.1	chr7	19692539	19692739	-	1	NA	NA	NA	20	NM_001110009	11812	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0.020000	0.606965	
mm_110269.1	chr12	31996782	31996982	-	1	NA	NA	NA	-46347	NM_153198	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.010000	0.462687	59(CTATTTATGCCC,+,0.00)
mm_45637.1	chr5	76658278	76658478	-	1	NA	NA	NA	66664	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.060000	0.592040	
mm_95667.1	chr11	53786719	53786919	+	1	NA	NA	NA	16346	NM_001159396	16362	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.020000	0.587065	
mm_158642.1	chrX	155338282	155338482	-	1	NA	NA	NA	78	NM_016764	53381	Mm.247542	NM_016764	ENSMUSG00000025289	Prdx4	AOE372|Prx-iv|Prx4|TRANK	peroxiredoxin 4	protein-coding	0.120000	0.676617	
mm_62967.1	chr7	119794181	119794381	+	1	NA	NA	NA	94	NM_001004187	434234	Mm.38237	NM_028129	ENSMUSG00000030924	2610020H08Rik	-	RIKEN cDNA 2610020H08 gene	protein-coding	0.065000	0.567164	
mm_154467.1	chrM	3574	3774	-	1	NA	NA	NA	NA	NA									0.020000	0.328358	
mm_167848.1	chrX	7412646	7412846	-	1	NA	NA	NA	8301	NR_027925	68355	Mm.45111	NR_027924		2010204K13Rik	0610010M13Rik|Cip7	RIKEN cDNA 2010204K13 gene	ncRNA	0.015000	0.482587	
mm_34595.1	chr4	150231043	150231243	+	1	NA	NA	NA	-6054	NM_023119	13806	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	0.025000	0.477612	
mm_58179.1	chr6	142858407	142858607	-	1	NA	NA	NA	44276	NR_045707	665037	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037|ENSMUSG00000072683	predicted gene 7457	ncRNA	0.005000	0.437811	
mm_3623.1	chr1	152750459	152750659	+	1	NA	NA	NA	8	NM_001081197	71281	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0.020000	0.422886	
mm_111988.1	chr12	110591497	110591697	-	1	NA	NA	NA	223	NR_033340	319786	Mm.129691	NR_033340		B930059L03Rik	-	RIKEN cDNA B930059L03 gene	ncRNA	0.085000	0.597015	
mm_130374.1	chr15	97823596	97823796	-	1	NA	NA	NA	8071	NM_019572	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.020000	0.497512	
mm_48055.1	chr5	136563223	136563423	-	1	NA	NA	NA	2658	NM_001291239	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.010000	0.402985	
mm_146703.1	chr18	13849734	13849934	-	1	NA	NA	NA	122899	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.010000	0.402985	67(CCTTTTAGAGAA,+,0.00)
mm_127750.1	chr15	103479021	103479221	+	1	NA	NA	NA	-23913	NM_008800	18574	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.000000	0.502488	29(GACCTTAAAAAA,-,0.00),31(CCTTAAAAAAGG,+,0.00)
mm_150700.1	chr19	42255741	42255941	+	1	NA	NA	NA	102	NM_027694	71146	Mm.329851	NM_027694	ENSMUSG00000042532	Golga7b	4933417O08Rik|AI839934	golgi autoantigen, golgin subfamily a, 7B	protein-coding	0.110000	0.761194	
mm_49110.1	chr6	8364500	8364700	+	1	NA	NA	NA	105312	NM_001302353	100036521	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039|OTTMUSG00000029336	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0.010000	0.482587	
mm_101166.1	chr11	16973910	16974110	-	1	NA	NA	NA	22600	NM_176982	319701	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.005000	0.388060	
mm_47801.1	chr5	132542103	132542303	-	1	NA	NA	NA	140	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.050000	0.552239	
mm_77613.1	chr8	123893612	123893812	-	1	NA	NA	NA	1063	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.035000	0.547264	
mm_25965.1	chr3	132737323	132737523	+	1	NA	NA	NA	53279	NM_001163455	271981	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0.005000	0.383085	
mm_152475.1	chr19	11017857	11018057	-	1	NA	NA	NA	6	NM_001251849	76002	Mm.139320	NM_001251849	ENSMUSG00000094584	Ms4a18	5033428B15Rik	membrane-spanning 4-domains, subfamily A, member 18	protein-coding	0.005000	0.442786	
mm_111716.1	chr12	103729281	103729481	-	1	NA	NA	NA	8808	NM_009244	20701	Mm.439692	NM_009244	ENSMUSG00000071178	Serpina1b	D12Ucla2|Dom2|PI2|Spi1-2	serine (or cysteine) preptidase inhibitor, clade A, member 1B	protein-coding	0.005000	0.467662	
mm_140593.1	chr17	10273937	10274137	-	1	NA	NA	NA	45324	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.020000	0.368159	
mm_124846.1	chr15	9463406	9463606	+	1	NA	NA	NA	27478	NM_029341	75568	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	0.015000	0.507463	
mm_2952.1	chr1	132417482	132417682	+	1	NA	NA	NA	129	NM_172516	213452	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	0.140000	0.761194	
mm_116709.1	chr13	51101420	51101620	-	1	NA	NA	NA	-27	NM_001283029	20729	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0.100000	0.606965	
mm_70954.1	chr8	26977284	26977484	+	1	NA	NA	NA	48	NM_001110508	353310	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.110000	0.751244	
mm_133428.1	chr16	87553228	87553428	+	1	NA	NA	NA	-2	NM_144854	224419	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	0.030000	0.512438	
mm_131794.1	chr16	22898929	22899129	+	1	NA	NA	NA	-4643	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.035000	0.577114	
mm_138791.1	chr17	37480708	37480908	+	1	NA	NA	NA	2721	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.005000	0.407960	
mm_71260.1	chr8	40917773	40917973	+	1	NA	NA	NA	-8360	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.005000	0.427861	40(TGCTTTTAAAGG,-,0.00),41(GCTTTTAAAGGA,+,0.00),42(CTTTTAAAGGAC,+,0.00)
mm_63440.1	chr7	127480521	127480721	+	1	NA	NA	NA	-4600	NM_010183	14123	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.010000	0.462687	
mm_118615.1	chr14	21032415	21032615	+	1	NA	NA	NA	19927	NM_018829	55946	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.005000	0.462687	
mm_102702.1	chr11	66168412	66168612	-	1	NA	NA	NA	39	NM_001099633	237806	Mm.264210	NM_001099633	ENSMUSG00000056752	Dnah9	9030022M04|A230091C01|C230051G16|D11Ertd686e|Dnahc9|mKIAA0357	dynein, axonemal, heavy chain 9	protein-coding	0.060000	0.646766	
mm_73955.1	chr8	120343774	120343974	+	1	NA	NA	NA	-115644	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.025000	0.517413	
mm_120708.1	chr14	71420912	71421112	+	1	NA	NA	NA	169739	NR_046076	100043132	Mm.399336	NR_046075		Gm4251	-	predicted gene 4251	ncRNA	0.005000	0.462687	
mm_125420.1	chr15	41835020	41835220	+	1	NA	NA	NA	4162	NM_001130164	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.015000	0.462687	
mm_102337.1	chr11	57831913	57832113	-	1	NA	NA	NA	134	NM_008213	15110	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed transcript 1	protein-coding	0.045000	0.572139	-33(CCTTATATAAGC,+,0.00),-33(CCTTATATAAGC,-,0.00)
mm_35970.1	chr4	53153630	53153830	-	1	NA	NA	NA	6165	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.010000	0.393035	-50(CTTTTTAAATGG,+,0.00)
mm_132020.1	chr16	26463054	26463254	+	1	NA	NA	NA	19	NM_053241	114141	Mm.275205	NM_053241	ENSMUSG00000038148	Cldn16	PCLN1|claudin-16	claudin 16	protein-coding	0.025000	0.592040	
mm_72693.1	chr8	84969743	84969943	+	1	NA	NA	NA	221	NM_011563	21672	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0.045000	0.582090	
mm_61540.1	chr7	79296932	79297132	+	1	NA	NA	NA	23766	NM_018811	54608	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.045000	0.562189	
mm_54060.1	chr6	13871072	13871272	-	1	NA	NA	NA	311	NR_024619	66520	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	ncRNA	0.025000	0.402985	
mm_15928.1	chr2	165068002	165068202	+	1	NA	NA	NA	12466	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.005000	0.462687	
mm_102911.1	chr11	69579032	69579232	-	1	NA	NA	NA	192	NM_144824	216853	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	0.070000	0.577114	
mm_167246.1	chr8	22625422	22625622	+	1	NA	NA	NA	1479	NM_145592	234130	Mm.157322	NM_145592	ENSMUSG00000031535	Dkk4	Dkk-4	dickkopf WNT signaling pathway inhibitor 4	protein-coding	0.000000	0.417910	
mm_63111.1	chr7	122671093	122671293	+	1	NA	NA	NA	-551	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.075000	0.616915	
mm_64097.1	chr7	141008603	141008803	+	1	NA	NA	NA	2041	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.015000	0.502488	
mm_38215.1	chr4	135969981	135970181	-	1	NA	NA	NA	2513	NM_011942	26394	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	0.010000	0.587065	
mm_54986.1	chr6	48747410	48747610	-	1	NA	NA	NA	1313	NM_175035	317757	Mm.455917	NM_175035	ENSMUSG00000043505	Gimap5	D630024P16|E230026N22Rik	GTPase, IMAP family member 5	protein-coding	0.010000	0.472637	
mm_65784.1	chr7	28803761	28803961	-	1	NA	NA	NA	-7029	NM_177301	15388	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.010000	0.393035	-33(GCTTAAATAGGC,+,0.00)
mm_163919.1	chr14	37360471	37360671	+	1	NA	NA	NA	-225249	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.000000	0.398010	
mm_124918.1	chr15	12117689	12117889	+	1	NA	NA	NA	-62	NM_011767	22763	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.095000	0.711443	
mm_149315.1	chr19	10784331	10784531	+	1	NA	NA	NA	43484	NR_027805	403202	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0.010000	0.527363	
mm_94690.1	chr11	19925872	19926072	+	1	NA	NA	NA	1530	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.025000	0.447761	
mm_156862.1	chrX	164419760	164419960	+	1	NA	NA	NA	73	NM_011081	18700	Mm.3781	NM_011081	ENSMUSG00000031381	Piga	AI194334|Pig-a	phosphatidylinositol glycan anchor biosynthesis, class A	protein-coding	0.065000	0.606965	
mm_110745.1	chr12	69893043	69893243	-	1	NA	NA	NA	20	NM_201519	399510	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	0.160000	0.776119	
mm_97999.1	chr11	84173256	84173456	+	1	NA	NA	NA	-5880	NM_001037932	628813	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690|OTTMUSG00000000997	predicted gene 11437	protein-coding	0.010000	0.457711	-91(TCTTATAAAGAG,+,0.00)
mm_27848.1	chr3	79156546	79156746	-	1	NA	NA	NA	-10771	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.328358	
mm_106041.1	chr11	116079228	116079428	-	1	NA	NA	NA	-1367	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.030000	0.582090	
mm_63328.1	chr7	126945108	126945308	+	1	NA	NA	NA	4373	NM_001347657	233879	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0.020000	0.557214	
mm_28136.1	chr3	87174568	87174768	-	1	NA	NA	NA	79	NM_001170985	170643	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kin of IRRE like (Drosophila)	protein-coding	0.075000	0.681592	
mm_149318.1	chr19	10839761	10839961	+	1	NA	NA	NA	-2683	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.010000	0.477612	
mm_85293.1	chr9	100466775	100466975	-	1	NA	NA	NA	19598	NM_001033543	213208	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.005000	0.562189	
mm_127362.1	chr15	100684516	100684716	+	1	NA	NA	NA	3304	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.030000	0.572139	
mm_107951.1	chr12	72434582	72434782	+	1	NA	NA	NA	-7184	NM_001142728	78257	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	0.010000	0.432836	
mm_89464.1	chr10	93336130	93336330	+	1	NA	NA	NA	-2	NR_038014	432488	Mm.32833	NR_038014		Gm17745	-	predicted gene, 17745	ncRNA	0.040000	0.512438	
mm_66326.1	chr7	42548488	42548688	-	1	NA	NA	NA	-42835	NM_001309388	434178	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	0.005000	0.388060	
mm_161520.1	chr15	100280794	100280994	+	1	NA	NA	NA	57	NM_183109	75002	Mm.261400	NM_183109	ENSMUSG00000045631	Tmprss12	4930478A21Rik	transmembrane (C-terminal) protease, serine 12	protein-coding	0.060000	0.671642	
mm_113854.1	chr13	47225463	47225663	+	1	NA	NA	NA	31560	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.010000	0.427861	-7(TTTTTTAAAGCA,+,0.00)
mm_150760.1	chr19	44229531	44229731	+	1	NA	NA	NA	26343	NM_024450	30049	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	0.000000	0.243781	
mm_127399.1	chr15	101134550	101134750	+	1	NA	NA	NA	6128	NM_001277257	11482	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	0.010000	0.542289	
mm_15643.1	chr2	163059307	163059507	+	1	NA	NA	NA	4772	NM_008652	17865	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	0.030000	0.567164	
mm_42906.1	chr5	122501696	122501896	+	1	NA	NA	NA	429	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.150000	0.776119	
mm_144249.1	chr18	10815627	10815827	+	1	NA	NA	NA	-30175	NR_029781	723959		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	0.015000	0.343284	-47(TTCTATAAAAAC,-,0.00)
mm_116010.1	chr13	24634338	24634538	-	1	NA	NA	NA	-4210	NM_001080381	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.025000	0.422886	
mm_143615.1	chr17	78768947	78769147	-	1	NA	NA	NA	-32487	NM_011500	268980	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	0.005000	0.447761	
mm_18771.1	chr2	73486343	73486543	-	1	NA	NA	NA	-690	NM_001289723	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.025000	0.522388	
mm_16733.1	chr2	9176729	9176929	-	1	NA	NA	NA	-12686	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.020000	0.467662	
mm_88251.1	chr10	73099066	73099266	+	1	NA	NA	NA	-12461	NR_040646	327768	Mm.417745	NR_040646		A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0.095000	0.661692	
mm_102930.1	chr11	69600738	69600938	-	1	NA	NA	NA	5122	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.010000	0.482587	
mm_10757.1	chr2	23207382	23207582	+	1	NA	NA	NA	6	NM_027635	70981	Mm.314026	NM_027635	ENSMUSG00000026774	4931423N10Rik	-	RIKEN cDNA 4931423N10 gene	protein-coding	0.035000	0.517413	
mm_147027.1	chr18	34652400	34652600	-	1	NA	NA	NA	-764	NM_178347	52563	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	0.025000	0.452736	
mm_113879.1	chr13	48968299	48968499	+	1	NA	NA	NA	287	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.160000	0.776119	
mm_74745.1	chr8	18990897	18991097	-	1	NA	NA	NA	58	NM_181683	353320	Mm.270483	NM_181683	ENSMUSG00000053695	Defb37	BD-37	defensin beta 37	protein-coding	0.000000	0.437811	
mm_112362.1	chr12	119159773	119159973	-	1	NA	NA	NA	78403	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.005000	0.338308	
mm_8403.1	chr1	151500891	151501091	-	1	NA	NA	NA	-168	NM_011277	19821	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0.145000	0.796020	
mm_52306.1	chr6	108828434	108828634	+	1	NA	NA	NA	-107	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.130000	0.791045	-56(GCCTATAGAGCC,+,0.00)
mm_143769.1	chr17	81670029	81670229	-	1	NA	NA	NA	68258	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.140000	0.741294	
mm_124004.1	chr14	76010749	76010949	-	1	NA	NA	NA	16	NM_026816	68705	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	0.110000	0.621891	
mm_20159.1	chr2	122146856	122147056	-	1	NA	NA	NA	-731	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.020000	0.437811	
mm_167198.1	chr7	142661004	142661204	-	1	NA	NA	NA	167	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.065000	0.631841	
mm_48071.1	chr5	136581662	136581862	-	1	NA	NA	NA	-14272	NM_001291238	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.025000	0.477612	
mm_85191.1	chr9	96719749	96719949	-	1	NA	NA	NA	11826	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.170000	0.781095	
mm_117981.1	chr13	100108997	100109197	-	1	NA	NA	NA	1078	NM_011353	20365	Mm.286177	NM_011353	ENSMUSG00000021643	Serf1	4F5|Msmac1|m4F5	small EDRK-rich factor 1	protein-coding	0.015000	0.407960	
mm_133219.1	chr16	76122518	76122718	+	1	NA	NA	NA	5	NR_040575	78215	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.010000	0.462687	
mm_133701.1	chr16	92995387	92995587	+	1	NA	NA	NA	-169413	NM_001111022	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.025000	0.497512	
mm_106803.1	chr12	5642900	5643100	+	1	NA	NA	NA	266498	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	0.020000	0.487562	
mm_160517.1	chr9	23222990	23223190	+	1	NA	NA	NA	14	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.140000	0.761194	
mm_43831.1	chr5	142972202	142972402	+	1	NA	NA	NA	11947	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.010000	0.572139	
mm_141359.1	chr17	28770175	28770375	-	1	NA	NA	NA	958	NM_011950	26415	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.025000	0.606965	
mm_74484.1	chr8	4325224	4325424	-	1	NA	NA	NA	114	NR_033527	20300	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0.105000	0.636816	-35(TTCTATAAAGAG,-,0.00)
mm_60911.1	chr7	46754169	46754369	+	1	NA	NA	NA	2436	NM_011314	20209	Mm.200941	NM_011314	ENSMUSG00000057465	Saa2	AW111173|Saa-2|Saa1	serum amyloid A 2	protein-coding	0.025000	0.487562	
mm_26312.1	chr3	142519253	142519453	+	1	NA	NA	NA	-10983	NM_001083312	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.010000	0.447761	
mm_118601.1	chr14	20707452	20707652	+	1	NA	NA	NA	0	NM_001252081	268721	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	0.125000	0.711443	
mm_110283.1	chr12	32080748	32080948	-	1	NA	NA	NA	-19569	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.030000	0.527363	
mm_29877.1	chr3	130978355	130978555	-	1	NA	NA	NA	-131842	NM_010703	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.030000	0.487562	
mm_60884.1	chr7	46396153	46396353	+	1	NA	NA	NA	-215	NM_008421	16502	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.090000	0.696517	
mm_140017.1	chr17	73804763	73804963	+	1	NA	NA	NA	22	NM_020578	57440	Mm.18526	NM_020578	ENSMUSG00000024065	Ehd3	Ehd2	EH-domain containing 3	protein-coding	0.110000	0.691542	-2(GCATTTAAACGC,+,0.00)
mm_157416.1	chrX	38456333	38456533	-	1	NA	NA	NA	27	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.070000	0.592040	
mm_127631.1	chr15	102470440	102470640	+	1	NA	NA	NA	-92	NM_011042	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.145000	0.796020	
mm_105414.1	chr11	103638778	103638978	-	1	NA	NA	NA	-4	NM_027083	69444	Mm.275677	NM_027083	ENSMUSG00000020945	Lyzl6	1700023H08Rik|Lyc1|Lyzb	lysozyme-like 6	protein-coding	0.010000	0.497512	
mm_6.1	chr1	4785687	4785887	+	1	NA	NA	NA	-61	NM_025300	27395	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	0.100000	0.621891	
mm_78642.1	chr9	40269336	40269536	+	1	NA	NA	NA	220	NM_178227	235281	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.060000	0.666667	
mm_31579.1	chr4	57741948	57742148	+	1	NA	NA	NA	-103200	NM_009649	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.015000	0.472637	
mm_91055.1	chr10	18831720	18831920	-	1	NA	NA	NA	110	NR_038035	73968	Mm.55591	NR_038034		4930444F02Rik	1700010L24Rik|mpiR	RIKEN cDNA 4930444F02 gene	ncRNA	0.015000	0.562189	
mm_5756.1	chr1	46853966	46854166	-	1	NA	NA	NA	-557	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.065000	0.532338	
mm_35340.1	chr4	32167194	32167394	-	1	NA	NA	NA	203187	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.025000	0.422886	
mm_140022.1	chr17	73830575	73830775	+	1	NA	NA	NA	25834	NM_020578	57440	Mm.18526	NM_020578	ENSMUSG00000024065	Ehd3	Ehd2	EH-domain containing 3	protein-coding	0.005000	0.537313	
mm_103447.1	chr11	76161386	76161586	-	1	NA	NA	NA	18144	NM_026664	68299	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	0.020000	0.487562	
mm_71707.1	chr8	61933865	61934065	+	1	NA	NA	NA	5878	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.015000	0.512438	
mm_27818.1	chr3	78888358	78888558	-	1	NA	NA	NA	256429	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.005000	0.422886	-94(TTTTTTAAACAC,+,0.00)
mm_18199.1	chr2	45117431	45117631	-	1	NA	NA	NA	-4252	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.040000	0.537313	32(CCCTTAATGCCC,+,0.00)
mm_75885.1	chr8	70804906	70805106	-	1	NA	NA	NA	-3443	NM_008353	16161	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	0.095000	0.756219	
mm_8498.1	chr1	153874929	153875129	-	1	NA	NA	NA	684	NM_001008426	433365	Mm.229362	NM_001008426	ENSMUSG00000043282	Teddm1b	EG433365|Gm5531	transmembrane epididymal protein 1B	protein-coding	0.010000	0.517413	
mm_6918.1	chr1	84840098	84840298	-	1	NA	NA	NA	357	NM_025386	66153	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.105000	0.681592	
mm_144695.1	chr18	34862376	34862576	+	1	NA	NA	NA	1269	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.055000	0.567164	
mm_48130.1	chr5	137149812	137150012	-	1	NA	NA	NA	-33705	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.010000	0.507463	
mm_125648.1	chr15	62328618	62328818	+	1	NA	NA	NA	-109267	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.025000	0.427861	
mm_79092.1	chr9	46242681	46242881	+	1	NA	NA	NA	1937	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.055000	0.601990	
mm_15991.1	chr2	167058786	167058986	+	1	NA	NA	NA	-4048	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.010000	0.482587	
mm_75157.1	chr8	36249230	36249430	-	1	NA	NA	NA	186	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.160000	0.815920	
mm_152160.1	chr19	7275752	7275952	-	1	NA	NA	NA	7573	NM_001320554	104383	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.000000	0.368159	
mm_47123.1	chr5	119806312	119806512	-	1	NA	NA	NA	-28251	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.010000	0.477612	-43(CCCCATAAATGA,-,0.00)
mm_33435.1	chr4	130104795	130104995	+	1	NA	NA	NA	-2661	NM_026441	67898	Mm.20818	NM_026441	ENSMUSG00000028779	Pef1	2600002E23Rik|Peflin	penta-EF hand domain containing 1	protein-coding	0.015000	0.482587	
mm_67729.1	chr7	90129803	90130003	-	1	NA	NA	NA	33	NR_046007	78329	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	0.100000	0.726368	
mm_4257.1	chr1	171418867	171419067	+	1	NA	NA	NA	-66	NM_001164525	226654	Mm.46366	NM_001164525	ENSMUSG00000103711	Tstd1	AV065366|EG226654|Gm4848|KAT	thiosulfate sulfurtransferase (rhodanese)-like domain containing 1	protein-coding	0.025000	0.542289	-34(GTCTATAAAGGT,-,0.00)
mm_39277.1	chr5	3909195	3909395	+	1	NA	NA	NA	-15362	NM_172135	545725	Mm.99593	NM_172135	ENSMUSG00000040429	Mterf1a	4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b	mitochondrial transcription termination factor 1a	protein-coding	0.005000	0.348259	
mm_112361.1	chr12	119107676	119107876	-	1	NA	NA	NA	130500	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.000000	0.402985	-34(TTCTTTTAAAGA,-,0.00),-33(TCTTTTAAAGAA,+,0.00)
mm_98879.1	chr11	97806646	97806846	+	1	NA	NA	NA	7074	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.025000	0.542289	
mm_100728.1	chr11	3931458	3931658	-	1	NA	NA	NA	403	NM_001130459	21452	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	0.010000	0.537313	
mm_31793.1	chr4	63979766	63979966	+	1	NA	NA	NA	67149	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding	0.005000	0.477612	
mm_121854.1	chr14	20664416	20664616	-	1	NA	NA	NA	58	NM_001310432	68760	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	0.005000	0.592040	-31(GGGCTTTAAAGG,-,0.00),-30(GGCTTTAAAGGG,-,0.00),-29(GCTTTAAAGGGC,+,0.00),-28(CTTTAAAGGGCC,+,0.00)
mm_159686.1	chr5	13791532	13791732	+	1	NA	NA	NA	13	NM_027650	71026	Mm.158536	NM_027650	ENSMUSG00000067855	Speer3	4933405P08Rik|SPEER-3	spermatogenesis associated glutamate (E)-rich protein 3	protein-coding	0.005000	0.477612	
mm_97734.1	chr11	80403247	80403447	+	1	NA	NA	NA	20068	NM_001130171	22680	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0.015000	0.363184	
mm_48395.1	chr5	139826764	139826964	-	1	NA	NA	NA	-21	NM_025604	66506	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	0.060000	0.606965	
mm_36355.1	chr4	74586275	74586475	-	1	NA	NA	NA	334496	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.005000	0.487562	-45(TCCCATAAATGC,-,0.00)
mm_162537.1	chr1	167308288	167308488	+	1	NA	NA	NA	-282	NM_001039483	68944	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	0.100000	0.676617	
mm_75381.1	chr8	45382070	45382270	-	1	NA	NA	NA	121	NM_153535	212326	Mm.51259	NM_153535	ENSMUSG00000070044	Fam149a	AW213256|mKIAA4166	family with sequence similarity 149, member A	protein-coding	0.015000	0.547264	
mm_117556.1	chr13	85126898	85127098	-	1	NA	NA	NA	-62387	NM_001347587	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0.025000	0.388060	
mm_83365.1	chr9	44432831	44433031	-	1	NA	NA	NA	7937	NM_001033469	382074	Mm.335103	NM_001033469	ENSMUSG00000074397	Foxr1	Foxn5|Gm1115	forkhead box R1	protein-coding	0.005000	0.452736	29(GGGCTTAAAGGC,-,0.00),73(GCCCATATAAGG,-,0.00),75(CCATATAAGGTG,+,0.00)
mm_132472.1	chr16	36708197	36708397	+	1	NA	NA	NA	14319	NM_001285791	106347	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.020000	0.522388	
mm_25113.1	chr3	101586158	101586358	+	1	NA	NA	NA	18449	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.025000	0.507463	
mm_164075.1	chr14	121063110	121063310	+	1	NA	NA	NA	27636	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.040000	0.427861	
mm_127011.1	chr15	95836844	95837044	+	1	NA	NA	NA	46101	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.020000	0.393035	
mm_7241.1	chr1	93635012	93635212	-	1	NA	NA	NA	615	NM_021537	59041	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.070000	0.686567	
mm_93240.1	chr10	95415404	95415604	-	1	NA	NA	NA	-20	NM_001168656	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.025000	0.562189	
mm_53842.1	chr6	148831432	148831632	+	1	NA	NA	NA	-65	NM_001081113	320727	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	0.060000	0.587065	
mm_150906.1	chr19	45782794	45782994	+	1	NA	NA	NA	397	NM_023799	76055	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	2810009A20Rik|4833427O07Rik|5830447M11Rik|AA408215|Hy5|Ncoat|OGA|mKIAA0679	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0.100000	0.706468	
mm_107386.1	chr12	33207571	33207771	+	1	NA	NA	NA	59985	NM_028139	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.015000	0.467662	
mm_89849.1	chr10	107271557	107271757	+	1	NA	NA	NA	-174	NM_001039354	108030	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding	0.065000	0.616915	
mm_4918.1	chr1	190911718	190911918	+	1	NA	NA	NA	-48	NM_178775	320119	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.090000	0.626866	
mm_166362.1	chr5	123713945	123714145	+	1	NA	NA	NA	6999	NM_027494	70650	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0.015000	0.422886	
mm_118766.1	chr14	22466252	22466452	+	1	NA	NA	NA	76446	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.000000	0.462687	
mm_87395.1	chr10	45335670	45335870	+	1	NA	NA	NA	8	NM_024285	23828	Mm.332793	NM_024285	ENSMUSG00000071317	Bves	Pop1|Popdc1|mBVES	blood vessel epicardial substance	protein-coding	0.200000	0.815920	
mm_75005.1	chr8	27234341	27234541	-	1	NA	NA	NA	-4853	NM_013462	11556	Mm.278475	NM_013462	ENSMUSG00000031489	Adrb3	Adrb-3	adrenergic receptor, beta 3	protein-coding	0.020000	0.537313	
mm_63542.1	chr7	128062572	128062772	+	1	NA	NA	NA	32	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.005000	0.487562	73(GACTCTTAAAGC,-,0.00)
mm_129246.1	chr15	76659993	76660193	-	1	NA	NA	NA	115	NM_001276322	54151	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0.060000	0.601990	
mm_41059.1	chr5	86804413	86804613	+	1	NA	NA	NA	23	NM_177680	231386	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.165000	0.756219	
mm_26152.1	chr3	138143733	138143933	+	1	NA	NA	NA	295	NM_175389	108943	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	0.130000	0.666667	
mm_83208.1	chr9	41985694	41985894	-	1	NA	NA	NA	138495	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.010000	0.497512	
mm_136774.1	chr17	10079153	10079353	+	1	NA	NA	NA	240108	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.010000	0.547264	-31(CCTCTTATGCAC,+,0.00)
mm_146016.1	chr18	69403987	69404187	+	1	NA	NA	NA	58366	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.005000	0.353234	3(TTCTATAAAAAA,-,0.00)
mm_111214.1	chr12	84400868	84401068	-	1	NA	NA	NA	-34	NM_001286049	12499	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0.000000	0.402985	
mm_88721.1	chr10	80168071	80168271	+	1	NA	NA	NA	330	NM_007705	12696	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.120000	0.606965	
mm_16858.1	chr2	11646483	11646683	-	1	NA	NA	NA	3791	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.000000	0.492537	
mm_128320.1	chr15	38004592	38004792	-	1	NA	NA	NA	-43637	NM_199476	382985	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.005000	0.303483	
mm_147693.1	chr18	60748272	60748472	-	1	NA	NA	NA	-26224	NM_020600	20044	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.175000	0.840796	
mm_15543.1	chr2	158385038	158385238	+	1	NA	NA	NA	9500	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.005000	0.288557	-50(CACTTTAAAAGA,-,0.00),-49(ACTTTAAAAGAG,+,0.00)
mm_14384.1	chr2	129631405	129631605	+	1	NA	NA	NA	38336	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.010000	0.557214	8(CCCTTTAAACTG,+,0.00)
mm_54495.1	chr6	35510136	35510336	-	1	NA	NA	NA	29652	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.343284	-52(CTATTTTAAAGG,-,0.00)
mm_155374.1	chrX	71556226	71556426	+	1	NA	NA	NA	409	NM_001293625	15354	Mm.336087	NM_008253	ENSMUSG00000015217	Hmgb3	Hmg2a|Hmg4	high mobility group box 3	protein-coding	0.140000	0.781095	
mm_154998.1	chrX	38601142	38601342	+	1	NA	NA	NA	584	NM_026902	68995	Mm.262453	NM_026902	ENSMUSG00000000355	Mcts1	1500019M23Rik|MCT-1	malignant T cell amplified sequence 1	protein-coding	0.010000	0.477612	
mm_131215.1	chr16	8830029	8830229	+	1	NA	NA	NA	29	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.160000	0.766169	
mm_142680.1	chr17	47732402	47732602	-	1	NA	NA	NA	-4535	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.040000	0.587065	
mm_42689.1	chr5	119835027	119835227	+	1	NA	NA	NA	464	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.025000	0.577114	
mm_156178.1	chrX	130395305	130395505	+	1	NA	NA	NA	645663	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.010000	0.353234	
mm_17880.1	chr2	34961670	34961870	-	1	NA	NA	NA	2	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.010000	0.512438	
mm_51549.1	chr6	83277260	83277460	+	1	NA	NA	NA	39985	NM_001166067	232156	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	0.045000	0.592040	
mm_2786.1	chr1	130847379	130847579	+	1	NA	NA	NA	-18298	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.020000	0.562189	
mm_141494.1	chr17	31512189	31512389	-	1	NA	NA	NA	198	NM_021322	57773	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik	WD repeat domain 4	protein-coding	0.135000	0.706468	
mm_58343.1	chr6	147243689	147243889	-	1	NA	NA	NA	20224	NM_008970	19227	Mm.28440	NM_008970	ENSMUSG00000048776	Pthlh	PLP|PTH-like|Pthrp	parathyroid hormone-like peptide	protein-coding	0.025000	0.477612	36(CCCTTTCAAGGC,+,0.00)
mm_88539.1	chr10	78465108	78465308	+	1	NA	NA	NA	-260	NM_172134	216134	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.040000	0.572139	
mm_23537.1	chr3	61002681	61002881	+	1	NA	NA	NA	-4	NM_008772	18441	Mm.281452	NM_008772	ENSMUSG00000027765	P2ry1	P2Y1	purinergic receptor P2Y, G-protein coupled 1	protein-coding	0.090000	0.696517	
mm_58978.1	chr7	19054568	19054768	+	1	NA	NA	NA	-19	NM_031255	83434	Mm.84435	NM_031255	ENSMUSG00000040866	Rsph6a	RSP4|Rshl1	radial spoke head 6 homolog A (Chlamydomonas)	protein-coding	0.055000	0.577114	
mm_164829.1	chr18	37806371	37806571	+	1	NA	NA	NA	61	NM_033581	93706	Mm.247203	NM_033581	ENSMUSG00000102918	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding	0.085000	0.651741	
mm_111959.1	chr12	109561658	109561858	-	1	NA	NA	NA	-1934	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.015000	0.333333	-57(ATCTATTTAAGG,-,0.00),-55(CTATTTAAGGAC,+,0.00)
mm_36690.1	chr4	96591390	96591590	-	1	NA	NA	NA	-5	NM_028979	74519	Mm.458387	NM_028979	ENSMUSG00000015224	Cyp2j9	8430417E17Rik	cytochrome P450, family 2, subfamily j, polypeptide 9	protein-coding	0.015000	0.527363	
mm_38222.1	chr4	135973561	135973761	-	1	NA	NA	NA	-1067	NM_011942	26394	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	0.000000	0.447761	
mm_45708.1	chr5	84066955	84067155	-	1	NA	NA	NA	350327	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.000000	0.303483	
mm_130264.1	chr15	96643179	96643379	-	1	NA	NA	NA	-366	NM_001166458	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.030000	0.557214	
mm_153396.1	chr19	40450094	40450294	-	1	NA	NA	NA	1204	NM_001034962	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.005000	0.363184	55(GCATTTAAAAAG,-,0.00)
mm_140732.1	chr17	15564206	15564406	-	1	NA	NA	NA	-983	NM_144809	213389	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	0.060000	0.592040	
mm_5880.1	chr1	53850842	53851042	-	1	NA	NA	NA	1518	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.005000	0.502488	
mm_31950.1	chr4	86748491	86748691	+	1	NA	NA	NA	36	NM_184088	329877	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	0.070000	0.626866	
mm_87759.1	chr10	60284330	60284530	+	1	NA	NA	NA	-31	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.497512	
mm_58861.1	chr7	16906929	16907129	+	1	NA	NA	NA	539	NM_008967	19222	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0.060000	0.631841	
mm_19961.1	chr2	117925349	117925549	-	1	NA	NA	NA	103521	NR_040631	73938	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0.005000	0.318408	
mm_54204.1	chr6	24956019	24956219	-	1	NA	NA	NA	6	NM_177013	319832	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0.110000	0.766169	
mm_91765.1	chr10	51496397	51496597	-	1	NA	NA	NA	5599	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.278607	
mm_123679.1	chr14	69503132	69503332	-	1	NA	NA	NA	9317	NM_173420	239167	Mm.259889	NM_173420	ENSMUSG00000047977	Synb	D930020E02Rik|syncytin-B	syncytin b	protein-coding	0.100000	0.736318	
mm_107861.1	chr12	69843582	69843782	+	1	NA	NA	NA	-4	NR_038173	70934	Mm.440427	NR_038172		4931403G20Rik	-	RIKEN cDNA 4931403G20 gene	ncRNA	0.030000	0.477612	
mm_52856.1	chr6	122078606	122078806	+	1	NA	NA	NA	-57922	NR_003624	381806	Mm.482418	NM_001013775	ENSMUSG00000071204	Gm10319	EG381806|ENSMUSG00000071204	murinoglobulin pseudogene	pseudo	0.015000	0.462687	
mm_4766.1	chr1	182472085	182472285	+	1	NA	NA	NA	45298	NM_009794	12334	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.000000	0.502488	
mm_84896.1	chr9	79793458	79793658	-	1	NA	NA	NA	-83	NR_040734	74633	Mm.262175	NR_040734	ENSMUSG00000086918	4930429F24Rik	-	RIKEN cDNA 4930429F24 gene	ncRNA	0.105000	0.651741	
mm_31815.1	chr4	66827683	66827883	+	1	NA	NA	NA	232	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.010000	0.547264	
mm_60038.1	chr7	31037313	31037513	+	1	NA	NA	NA	2904	NR_106017	102465635		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.005000	0.368159	-6(TTTTTTAAAGGT,+,0.00)
mm_128698.1	chr15	63270359	63270559	-	1	NA	NA	NA	209149	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA	0.000000	0.517413	
mm_79971.1	chr9	66512519	66512719	+	1	NA	NA	NA	1974	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.025000	0.582090	
mm_130286.1	chr15	96996987	96997187	-	1	NA	NA	NA	58869	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.025000	0.502488	
mm_19285.1	chr2	90395082	90395282	-	1	NA	NA	NA	-5458	NM_146263	258330	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	0.070000	0.601990	
mm_149436.1	chr19	11477654	11477854	+	1	NA	NA	NA	8386	NM_028595	73656	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.000000	0.358209	-36(TTCCATTAAAAG,-,0.00),-34(CCATTAAAAGTC,+,0.00)
mm_52447.1	chr6	113660580	113660780	+	1	NA	NA	NA	22213	NM_001113553	108960	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.040000	0.482587	
mm_29118.1	chr3	105019866	105020066	-	1	NA	NA	NA	32987	NM_001163333	80281	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.015000	0.502488	
mm_11466.1	chr2	32288186	32288386	+	1	NA	NA	NA	33	NM_001080968	99412	Mm.106376	NM_133852	ENSMUSG00000002546	Golga2	AW555139|GM130|mKIAA4150	golgi autoantigen, golgin subfamily a, 2	protein-coding	0.080000	0.651741	
mm_60433.1	chr7	44476782	44476982	+	1	NA	NA	NA	6535	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.412935	
mm_58991.1	chr7	19119783	19119983	+	1	NA	NA	NA	24	NM_175530	243867	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0.065000	0.631841	
mm_21252.1	chr2	156312195	156312395	-	1	NA	NA	NA	-178	NM_027585	70873	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	0.140000	0.751244	
mm_89529.1	chr10	94493118	94493318	+	1	NA	NA	NA	-21639	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.000000	0.388060	
mm_73465.1	chr8	106663792	106663992	+	1	NA	NA	NA	-19176	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.035000	0.532338	
mm_113226.1	chr13	27065045	27065245	+	1	NA	NA	NA	7575	NM_011164	19109	Mm.1270	NM_011164	ENSMUSG00000021342	Prl	AV290867|Gha1|Prl1a1	prolactin	protein-coding	0.000000	0.318408	-61(CCTTAAAAGTCC,+,0.00)
mm_123062.1	chr14	55671796	55671996	-	1	NA	NA	NA	10	NM_008683	18002	Mm.296566	NM_008683	ENSMUSG00000010376	Nedd8	Rub1	neural precursor cell expressed, developmentally down-regulated gene 8	protein-coding	0.055000	0.597015	
mm_38206.1	chr4	135873476	135873676	-	1	NA	NA	NA	270	NM_026383	52830	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.085000	0.666667	
mm_150734.1	chr19	43731899	43732099	+	1	NA	NA	NA	21001	NM_144874	226139	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	0.005000	0.527363	
mm_10971.1	chr2	25706770	25706970	+	1	NA	NA	NA	-9	NM_023326	107771	Mm.330057	NM_023326	ENSMUSG00000049086	Bmyc	2900002K07Rik|AW060705|Mycb	brain expressed myelocytomatosis oncogene	protein-coding	0.100000	0.686567	
mm_162642.1	chr1	191957808	191958008	+	1	NA	NA	NA	-19462	NM_001177900	74023	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	0.015000	0.402985	
mm_9389.1	chr1	172215885	172216085	-	1	NA	NA	NA	3910	NM_009813	12372	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.010000	0.452736	
mm_161209.1	chr13	62383090	62383290	-	1	NA	NA	NA	-16	NM_001162910	100041979	Mm.445930	NM_001162910	ENSMUSG00000094942	Gm3604	-	predicted gene 3604	protein-coding	0.035000	0.527363	
mm_66392.1	chr7	44236031	44236231	-	1	NA	NA	NA	-9	NR_029436	70004	Mm.158317	NR_029436	ENSMUSG00000038782	1700028J19Rik	-	RIKEN cDNA 1700028J19 gene	ncRNA	0.015000	0.587065	
mm_104097.1	chr11	86694898	86695098	-	1	NA	NA	NA	10917	NM_001098810	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.000000	0.358209	1(GAGTATAAAAGG,-,0.00)
mm_66086.1	chr7	30966263	30966463	-	1	NA	NA	NA	7106	NM_001164185	54135	Mm.4067	NM_017405	ENSMUSG00000001247	Lsr	ILDR3|Lisch7	lipolysis stimulated lipoprotein receptor	protein-coding	0.010000	0.482587	
mm_34529.1	chr4	149323888	149324088	+	1	NA	NA	NA	-10651	NR_131918	74310	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0.040000	0.542289	
mm_106277.1	chr11	118130562	118130762	-	1	NA	NA	NA	-1443	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.015000	0.542289	
mm_88617.1	chr10	79854529	79854729	+	1	NA	NA	NA	197	NM_001283013	19205	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0.115000	0.671642	
mm_18314.1	chr2	57106510	57106710	-	1	NA	NA	NA	8428	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.000000	0.313433	
mm_3493.1	chr1	150106381	150106581	+	1	NA	NA	NA	6450	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.388060	
mm_146255.1	chr18	77790429	77790629	+	1	NA	NA	NA	-4021	NM_013831	19201	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.010000	0.278607	-85(TCCCTTTAAAGG,-,0.00),-84(CCCTTTAAAGGG,+,0.00),-84(CCCTTTAAAGGG,-,0.00),-83(CCTTTAAAGGGA,+,0.00)
mm_89018.1	chr10	82102090	82102290	+	1	NA	NA	NA	-25823	NM_001163064	216177	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding	0.000000	0.477612	
mm_157762.1	chrX	73659756	73659956	-	1	NA	NA	NA	-2	NM_001199351	93843	Mm.89564	NM_012040	ENSMUSG00000002012	Pnck	Bstk3|CaMKIbeta2|CaMKlb2|Camk1b|Punc|caMKlb1	pregnancy upregulated non-ubiquitously expressed CaM kinase	protein-coding	0.095000	0.706468	
mm_83676.1	chr9	50233082	50233282	-	1	NA	NA	NA	0	NR_131161	71873		NR_131161	ENSMUSG00000110916	2310003N18Rik	-	RIKEN cDNA 2310003N18 gene	ncRNA	0.010000	0.497512	
mm_78501.1	chr9	32739936	32740136	+	1	NA	NA	NA	43994	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.000000	0.353234	
mm_66250.1	chr7	35585460	35585660	-	1	NA	NA	NA	22	NM_145840	243923	Mm.222680	NM_145840	ENSMUSG00000056043	Rgs9bp	R9AP|Rgs9-1bp	regulator of G-protein signalling 9 binding protein	protein-coding	0.065000	0.656716	
mm_125915.1	chr15	76080552	76080752	+	1	NA	NA	NA	218	NM_001164600	67959	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	0.140000	0.761194	
mm_86612.1	chr10	13964929	13965129	+	1	NA	NA	NA	-1350	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.055000	0.701493	
mm_162241.1	chrX	155033207	155033407	-	1	NA	NA	NA	-15	NM_020016	17138	Mm.326653	NM_020016	ENSMUSG00000055746	Magea2	Mage-a2	melanoma antigen, family A, 2	protein-coding	0.040000	0.512438	
mm_42765.1	chr5	121220161	121220361	+	1	NA	NA	NA	42	NM_181421	269700	Mm.184589	NM_181421	ENSMUSG00000042744	Gm15800	A130010L24|AU042671|BC019639|EG545802|OTTMUSG00000026283|mKIAA0614	predicted gene 15800	protein-coding	0.130000	0.756219	
mm_42368.1	chr5	114923249	114923449	+	1	NA	NA	NA	109	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.040000	0.601990	-35(CGCCTTAAAAAA,-,0.00),-33(CCTTAAAAAAGG,+,0.00)
mm_117608.1	chr13	90905231	90905431	-	1	NA	NA	NA	24	NM_001145879	435376	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	0.005000	0.417910	
mm_119402.1	chr14	43925241	43925441	+	1	NA	NA	NA	-1973	NM_053112	93725	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	0.025000	0.492537	14(CAGTATTTAAGC,-,0.00)
mm_55225.1	chr6	52234132	52234332	-	1	NA	NA	NA	707	NM_008263	15395	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0.140000	0.756219	
mm_68194.1	chr7	104369790	104369990	-	1	NA	NA	NA	-11244	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.000000	0.462687	
mm_36528.1	chr4	86558221	86558421	-	1	NA	NA	NA	-18	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0.015000	0.597015	
mm_132367.1	chr16	34784826	34785026	+	1	NA	NA	NA	-24	NM_139300	107589	Mm.33360	NM_139300	ENSMUSG00000022836	Mylk	9530072E15Rik|A930019C19Rik|AW489456|KRP|MLCK108|MLCK210|Mlck|nmMlck|smMLCK	myosin, light polypeptide kinase	protein-coding	0.010000	0.557214	
mm_127948.1	chr15	10720153	10720353	-	1	NA	NA	NA	5353	NR_045065	75259	Mm.33928	NR_045063	ENSMUSG00000097058	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	0.025000	0.527363	
mm_18984.1	chr2	76854328	76854528	-	1	NA	NA	NA	128119	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.010000	0.328358	
mm_167179.1	chr7	141016020	141016220	-	1	NA	NA	NA	772	NM_001033632	213002	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.020000	0.477612	
mm_21483.1	chr2	163054314	163054514	-	1	NA	NA	NA	-221	NM_008652	17865	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	0.035000	0.562189	
mm_141216.1	chr17	27167668	27167868	-	1	NA	NA	NA	-4	NM_173027	271424	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	0.015000	0.601990	
mm_53733.1	chr6	145121679	145121879	+	1	NA	NA	NA	40	NM_008511	16970	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.035000	0.577114	
mm_56699.1	chr6	114875001	114875201	-	1	NA	NA	NA	46651	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.045000	0.577114	
mm_32601.1	chr4	111972834	111973034	+	1	NA	NA	NA	7	NM_001142775	328505	Mm.226771	NM_177818	ENSMUSG00000049214	Skint7	C130057D23Rik	selection and upkeep of intraepithelial T cells 7	protein-coding	0.000000	0.422886	-41(CTTTTTATAGAA,+,0.00)
mm_32319.1	chr4	103619404	103619604	+	1	NA	NA	NA	237004	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA	0.040000	0.572139	
mm_116485.1	chr13	44197364	44197564	-	1	NA	NA	NA	19023	NR_045088	100503592	Mm.184925	NR_045088		A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	0.020000	0.492537	
mm_37424.1	chr4	122885864	122886064	-	1	NA	NA	NA	93	NM_007598	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.100000	0.656716	
mm_23652.1	chr3	67582653	67582853	+	1	NA	NA	NA	-15	NM_025813	66868	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.090000	0.641791	
mm_151166.1	chr19	53195377	53195577	+	1	NA	NA	NA	51480	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.005000	0.398010	
mm_63607.1	chr7	128173863	128174063	+	1	NA	NA	NA	17	NM_001029872	381924	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	0.010000	0.562189	
mm_78455.1	chr9	32372341	32372541	+	1	NA	NA	NA	23	NM_019659	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.015000	0.452736	-90(TCATTTAAGGCC,+,0.00)
mm_3344.1	chr1	137974535	137974735	+	1	NA	NA	NA	7996	NR_029820	723890		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA	0.000000	0.388060	
mm_77979.1	chr9	7870874	7871074	+	1	NA	NA	NA	2196	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.015000	0.497512	
mm_15447.1	chr2	157389198	157389398	+	1	NA	NA	NA	21704	NM_026968	69161	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	0.010000	0.472637	
mm_11500.1	chr2	32535231	32535431	+	1	NA	NA	NA	-28	NM_153560	98952	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.155000	0.746269	
mm_33849.1	chr4	135857788	135857988	+	1	NA	NA	NA	1817	NM_010178	14105	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0.020000	0.457711	
mm_31178.1	chr4	43506926	43507126	+	1	NA	NA	NA	0	NM_139305	230099	Mm.283682	NM_139305	ENSMUSG00000028463	Car9	CAIX|Ca9|MN/CA9	carbonic anhydrase 9	protein-coding	0.020000	0.626866	
mm_54366.1	chr6	31126425	31126625	-	1	NA	NA	NA	-63432	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.025000	0.547264	
mm_40721.1	chr5	65966850	65967050	+	1	NA	NA	NA	-174	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.025000	0.477612	-95(GCTTTTAAATCA,+,0.00),-32(GCTTTTAAATCA,+,0.00)
mm_158298.1	chrX	116287045	116287245	-	1	NA	NA	NA	-161799	NM_001033471	382239	Mm.336224	NM_001033471	ENSMUSG00000072995	Cpxcr1	Gm1143	CPX chromosome region, candidate 1	protein-coding	0.025000	0.462687	
mm_166396.1	chr5	135013091	135013291	-	1	NA	NA	NA	-34	NR_026688	69812	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0.005000	0.557214	
mm_63248.1	chr7	126595061	126595261	+	1	NA	NA	NA	-251	NM_145636	246779	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	0.010000	0.621891	
mm_47311.1	chr5	122458392	122458592	-	1	NA	NA	NA	36048	NM_019805	56317	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0.030000	0.512438	59(TTTTTTAAAGCC,+,0.00)
mm_97384.1	chr11	77746906	77747106	+	1	NA	NA	NA	-21713	NM_009965	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.025000	0.482587	
mm_107350.1	chr12	32820408	32820608	+	1	NA	NA	NA	173	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.125000	0.701493	
mm_117787.1	chr13	97034286	97034486	-	1	NA	NA	NA	-24	NM_001080777	66479	Mm.390629	NM_025585	ENSMUSG00000052075	1700029F12Rik	-	RIKEN cDNA 1700029F12 gene	protein-coding	0.005000	0.422886	43(TGATTTAAAAGG,-,0.00)
mm_169969.1	chr17	13163353	13163553	+	1	NA	NA	NA	-31662	NM_199252	381058	Mm.390935	NM_199252	ENSMUSG00000067049	Unc93a	Unc93l|unc-93A	unc-93 homolog A (C. elegans)	protein-coding	0.030000	0.517413	
mm_26834.1	chr3	11211149	11211349	-	1	NA	NA	NA	633110	NR_040751	100038545	Mm.388494	NR_040751	ENSMUSG00000104015	Gm10745	ENSMUSG00000074696	predicted gene 10745	ncRNA	0.015000	0.567164	
mm_52904.1	chr6	122761339	122761539	+	1	NA	NA	NA	-18694	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.010000	0.353234	
mm_25057.1	chr3	98684828	98685028	+	1	NA	NA	NA	-39394	NM_008295	15496	Mm.17910	NM_008295	ENSMUSG00000038092	Hsd3b5	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 5	protein-coding	0.005000	0.308458	
mm_110755.1	chr12	70084060	70084260	-	1	NA	NA	NA	18694	NM_001081453	18080	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0.005000	0.373134	
mm_64791.1	chr7	6286209	6286409	-	1	NA	NA	NA	-271	NM_001024928	384763	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0.095000	0.597015	
mm_53740.1	chr6	145126537	145126737	+	1	NA	NA	NA	4898	NM_008511	16970	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.010000	0.358209	
mm_68056.1	chr7	101837652	101837852	-	1	NA	NA	NA	72	NM_001122739	16332	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0.105000	0.686567	
mm_100460.1	chr11	119856145	119856345	+	1	NA	NA	NA	-21880	NR_045312	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	0.025000	0.537313	
mm_58565.1	chr7	4782864	4783064	+	1	NA	NA	NA	24	NM_030028	78052	Mm.160043	NM_030028	ENSMUSG00000013091	Tmem190	4930572D21Rik	transmembrane protein 190	protein-coding	0.005000	0.562189	
mm_44810.1	chr5	33518876	33519076	-	1	NA	NA	NA	-84886	NM_011320	672284		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 transcription factor related, locus 1 (Drosophila)	protein-coding	0.010000	0.532338	
mm_15584.1	chr2	158767991	158768191	+	1	NA	NA	NA	-8	NM_027975	71878	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	0.075000	0.606965	-33(GCCTATAAAAAC,-,0.00)
mm_126349.1	chr15	79907543	79907743	+	1	NA	NA	NA	12620	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.010000	0.462687	
mm_157824.1	chrX	74085564	74085764	-	1	NA	NA	NA	26	NM_010788	17257	Mm.131408	NM_010788	ENSMUSG00000031393	Mecp2	1500041B07Rik|D630021H01Rik|Mbd5|WBP10	methyl CpG binding protein 2	protein-coding	0.125000	0.696517	
mm_19483.1	chr2	93046180	93046380	-	1	NA	NA	NA	-136	NM_001177536	100042784	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	0.140000	0.746269	
mm_154711.1	chrX	8892300	8892500	+	1	NA	NA	NA	47	NR_045448	102941	Mm.41588	NM_175327	ENSMUSG00000052364	B630019K06Rik	AI843180	novel protein similar to F-box and leucine-rich repeat protein 17 (Fbxl17)	pseudo	0.085000	0.711443	
mm_151437.1	chr19	57360846	57361046	+	1	NA	NA	NA	-47	NR_040316	320879	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	0.140000	0.820896	
mm_79188.1	chr9	48418472	48418672	+	1	NA	NA	NA	-35772	NR_026561	667933	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.005000	0.467662	
mm_38426.1	chr4	139291003	139291203	-	1	NA	NA	NA	19597	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.045000	0.497512	
mm_13300.1	chr2	102549963	102550163	+	1	NA	NA	NA	42	NM_173749	210622	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	0.050000	0.641791	
mm_153704.1	chr19	44397679	44397879	-	1	NA	NA	NA	9930	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.015000	0.308458	
mm_44549.1	chr5	24598644	24598844	-	1	NA	NA	NA	3258	NM_025891	66993	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.110000	0.791045	
mm_51791.1	chr6	88220691	88220891	+	1	NA	NA	NA	-1477	NM_019964	56691	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	0.000000	0.582090	
mm_123839.1	chr14	70642072	70642272	-	1	NA	NA	NA	96	NM_008004	14171	Mm.12814	NM_008004	ENSMUSG00000022101	Fgf17	-	fibroblast growth factor 17	protein-coding	0.055000	0.616915	
mm_65308.1	chr7	24760219	24760419	-	1	NA	NA	NA	-8	NM_026862	68891	Mm.292848	NM_026862	ENSMUSG00000052212	Cd177	1190003K14Rik|Pdp3	CD177 antigen	protein-coding	0.020000	0.507463	-35(GTGTATAAAAAG,-,0.00)
mm_136593.1	chr17	5012720	5012920	+	1	NA	NA	NA	17746	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.010000	0.487562	
mm_157810.1	chrX	73950341	73950541	-	1	NA	NA	NA	15916	NM_008224	15161	Mm.491126	NM_008224	ENSMUSG00000031386	Hcfc1	AW060991|HCF|HCF1	host cell factor C1	protein-coding	0.005000	0.532338	
mm_59352.1	chr7	25659335	25659535	+	1	NA	NA	NA	282	NR_104358	27998	Mm.27853	NM_138586	ENSMUSG00000061286	Exosc5	D7Wsu180e	exosome component 5	protein-coding	0.060000	0.507463	
mm_121998.1	chr14	26591545	26591745	-	1	NA	NA	NA	12095	NM_145969	211922	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	0.000000	0.537313	
mm_125721.1	chr15	73090767	73090967	+	1	NA	NA	NA	455	NM_053068	93696	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0.110000	0.666667	
mm_2719.1	chr1	128155532	128155732	+	1	NA	NA	NA	-46729	NR_029543	387147		NR_029543	ENSMUSG00000065520	Mir128-1	Mirn128|Mirn128-1|Mirn128a|mir-128-1	microRNA 128-1	ncRNA	0.010000	0.348259	-11(TCCTTTAAGGGG,+,0.00),-10(CCTTTAAGGGGC,+,0.00)
mm_168930.1	chr12	65742793	65742993	+	1	NA	NA	NA	517376	NM_027614	70948	Mm.219475	NM_027614	ENSMUSG00000035560	Wdr20rt	4921538B03Rik|4930427E19Rik|Wdr20|Wdr20b	WD repeat domain 20, retrogene	protein-coding	0.020000	0.517413	-21(CCCTTTATAAGT,-,0.00)
mm_101787.1	chr11	45955378	45955578	-	1	NA	NA	NA	25	NM_001080969	66628	Mm.269083	NM_001080969	ENSMUSG00000011254	Thg1l	-	tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	protein-coding	0.055000	0.557214	
mm_126421.1	chr15	80572330	80572530	+	1	NA	NA	NA	-167	NM_001289442	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.030000	0.537313	
mm_120598.1	chr14	70077280	70077480	+	1	NA	NA	NA	-65	NM_018781	13655	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.115000	0.681592	
mm_109938.1	chr12	11265692	11265892	-	1	NA	NA	NA	-5	NM_177331	209334	Mm.215295	NM_177331	ENSMUSG00000051235	Gen1	5830483C08Rik	GEN1, Holliday junction 5' flap endonuclease	protein-coding	0.060000	0.592040	
mm_114598.1	chr13	75766068	75766268	+	1	NA	NA	NA	58684	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.000000	0.393035	
mm_118072.1	chr13	102958201	102958401	-	1	NA	NA	NA	198046	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.030000	0.457711	
mm_90175.1	chr10	119691918	119692118	+	1	NA	NA	NA	69681	NR_045359	75321	Mm.402041	NR_045359	ENSMUSG00000084764	Grip1os2	4930564G21Rik	glutamate receptor interacting protein 1, opposite strand 2	ncRNA	0.020000	0.517413	
mm_155986.1	chrX	106136992	106137192	+	1	NA	NA	NA	-6183	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.000000	0.243781	
mm_164125.1	chr15	38634617	38634817	+	1	NA	NA	NA	-27187	NM_025494	66335	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.005000	0.462687	
mm_157224.1	chrX	13846384	13846584	-	1	NA	NA	NA	72	NM_001284505	12361	Mm.327591	NM_009806	ENSMUSG00000031012	Cask	DXPri1|DXRib1|LIN-2|Pals3|mLin-2	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding	0.155000	0.776119	
mm_57555.1	chr6	126877214	126877414	-	1	NA	NA	NA	24216	NM_009650	11642	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	0.030000	0.507463	-98(TGGTTTAAAAAG,-,0.00)
mm_65161.1	chr7	19671740	19671940	-	1	NA	NA	NA	2080	NM_001309795	11813	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0.015000	0.582090	
mm_91516.1	chr10	37138486	37138686	-	1	NA	NA	NA	340	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.065000	0.611940	
mm_108987.1	chr12	102757845	102758045	+	1	NA	NA	NA	-30	NM_025666	66622	Mm.34261	NM_025666	ENSMUSG00000041712	Ubr7	5730410I19Rik|AA589405|AW557761	ubiquitin protein ligase E3 component n-recognin 7 (putative)	protein-coding	0.095000	0.661692	
mm_97463.1	chr11	78262379	78262579	+	1	NA	NA	NA	725	NM_001002004	72503	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0.010000	0.328358	3(CTCTTTTAGAGG,-,0.00),4(TCTTTTAGAGGG,+,0.00)
mm_62526.1	chr7	102232980	102233180	+	1	NA	NA	NA	10052	NR_111937	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.015000	0.462687	
mm_13607.1	chr2	113327669	113327869	+	1	NA	NA	NA	33	NM_010230	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.070000	0.651741	
mm_118373.1	chr13	116968605	116968805	-	1	NA	NA	NA	56811	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.010000	0.492537	
mm_82626.1	chr9	21852524	21852724	-	1	NA	NA	NA	11	NM_177030	319899	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	0.135000	0.751244	
mm_111853.1	chr12	107939050	107939250	-	1	NA	NA	NA	64264	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.015000	0.412935	
mm_117034.1	chr13	58274378	58274578	-	1	NA	NA	NA	-290	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.150000	0.771144	
mm_95170.1	chr11	40733804	40734004	+	1	NA	NA	NA	243	NM_001290697	52653	Mm.276504	NM_026023	ENSMUSG00000020328	Nudcd2	-	NudC domain containing 2	protein-coding	0.075000	0.616915	-99(TCTTAAATGGGC,+,0.00)
mm_32003.1	chr4	94614442	94614642	+	1	NA	NA	NA	51	NM_026319	67694	Mm.240619	NM_026319	ENSMUSG00000028576	Ift74	1700029H06Rik|Ccdc2|Cmg1|b2b796Clo	intraflagellar transport 74	protein-coding	0.115000	0.661692	
mm_124449.1	chr14	118922988	118923188	-	1	NA	NA	NA	79	NR_130725	66573	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	0.110000	0.721393	
mm_82291.1	chr9	7763669	7763869	-	1	NA	NA	NA	-308	NM_133739	71929	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0.065000	0.557214	
mm_43373.1	chr5	135640710	135640910	+	1	NA	NA	NA	8156	NM_146002	215160	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0.000000	0.407960	
mm_162705.1	chr10	22731928	22732128	+	1	NA	NA	NA	-581	NM_011603	237336	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.065000	0.601990	
mm_67335.1	chr7	79743009	79743209	-	1	NA	NA	NA	-54	NM_001037927	626359	Mm.387216	NM_001037927	ENSMUSG00000039099	Wdr93	EG626359	WD repeat domain 93	protein-coding	0.075000	0.597015	
mm_80636.1	chr9	89211537	89211737	+	1	NA	NA	NA	447	NM_026829	107885	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.015000	0.393035	
mm_92259.1	chr10	70655853	70656053	-	1	NA	NA	NA	10	NR_045292	319646	Mm.483039	NR_045291	ENSMUSG00000037747	D630013N20Rik	-	RIKEN cDNA D630013N20 gene	ncRNA	0.010000	0.432836	
mm_160566.1	chr9	55921250	55921450	-	1	NA	NA	NA	16765	NM_001081341	244891	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	0.015000	0.353234	
mm_5382.1	chr1	30949928	30950128	-	1	NA	NA	NA	-273	NM_011200	19243	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	0.110000	0.651741	
mm_168197.1	chr10	65389771	65389971	-	1	NA	NA	NA	734193	NR_038039	69433	Mm.23366	NR_038039	ENSMUSG00000100000	1700023F02Rik	AV205046	RIKEN cDNA 1700023F02 gene	ncRNA	0.025000	0.492537	
mm_136293.1	chr16	91464722	91464922	-	1	NA	NA	NA	-282	NR_077219	100503120	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.040000	0.522388	
mm_112296.1	chr12	114583949	114584149	-	1	NA	NA	NA	-70355	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.422886	
mm_69598.1	chr7	135716280	135716480	-	1	NA	NA	NA	-1	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.155000	0.771144	
mm_14024.1	chr2	122150960	122151160	+	1	NA	NA	NA	3373	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.025000	0.477612	
mm_123142.1	chr14	56778227	56778427	-	1	NA	NA	NA	-11	NM_025682	66645	Mm.20129	NM_025682	ENSMUSG00000021938	Pspc1	5730470C09Rik|AI327109|AI449052|PSP1	paraspeckle protein 1	protein-coding	0.110000	0.626866	
mm_22542.1	chr3	8881048	8881248	+	1	NA	NA	NA	42709	NM_025434	66230	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.050000	0.437811	-32(CCTTTTAAAGTA,+,0.00)
mm_63859.1	chr7	135675135	135675335	+	1	NA	NA	NA	-22921	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.015000	0.378109	
mm_152749.1	chr19	19111092	19111292	-	1	NA	NA	NA	4	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.060000	0.562189	
mm_142027.1	chr17	35219504	35219704	-	1	NA	NA	NA	-14253	NM_010735	16992	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0.010000	0.512438	
mm_137861.1	chr17	31212014	31212214	+	1	NA	NA	NA	4048	NM_177823	328795	Mm.387930	NM_177823	ENSMUSG00000042345	Ubash3a	5830413C03Rik|C330001M22|Sts-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing, A	protein-coding	0.010000	0.552239	
mm_82793.1	chr9	29411696	29411896	-	1	NA	NA	NA	551333	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.080000	0.631841	
mm_29962.1	chr3	133463809	133464009	-	1	NA	NA	NA	80481	NM_001346736	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.005000	0.293532	
mm_77346.1	chr8	119574746	119574946	-	1	NA	NA	NA	354	NM_175185	72552	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	0.070000	0.611940	
mm_106776.1	chr12	4629812	4630012	+	1	NA	NA	NA	36904	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.000000	0.422886	
mm_101147.1	chr11	16591571	16591771	-	1	NA	NA	NA	-83187	NM_001109971	20335	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0.020000	0.552239	
mm_49905.1	chr6	38980900	38981100	+	1	NA	NA	NA	62014	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.010000	0.407960	
mm_114654.1	chr13	77961227	77961427	+	1	NA	NA	NA	-63575	NM_029315	75507	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding	0.000000	0.283582	
mm_153713.1	chr19	44400111	44400311	-	1	NA	NA	NA	7498	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.060000	0.547264	
mm_5439.1	chr1	34842881	34843081	-	1	NA	NA	NA	69	NM_001160235	214469	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.195000	0.820896	
mm_38188.1	chr4	135334116	135334316	-	1	NA	NA	NA	18998	NM_016799	51796	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.005000	0.338308	
mm_156310.1	chrX	136838036	136838236	+	1	NA	NA	NA	15390	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.338308	
mm_78442.1	chr9	32115945	32116145	+	1	NA	NA	NA	-91	NM_001195632	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.005000	0.537313	
mm_86627.1	chr10	13967067	13967267	+	1	NA	NA	NA	788	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.155000	0.776119	
mm_159730.1	chr5	45639623	45639823	-	1	NA	NA	NA	-222	NM_021416	58227	Mm.266466	NM_021416	ENSMUSG00000015879	Fam184b	9630031F12Rik|AB041544	family with sequence similarity 184, member B	protein-coding	0.020000	0.482587	
mm_151821.1	chr19	5560476	5560676	-	1	NA	NA	NA	-1	NM_019935	18426	Mm.280225	NM_019935	ENSMUSG00000024922	Ovol1	BB147136|Ovo1|movo1	ovo like zinc finger 1	protein-coding	0.120000	0.651741	
mm_52844.1	chr6	121838421	121838621	+	1	NA	NA	NA	-20	NM_008645	17836	Mm.1311	NM_008645	ENSMUSG00000059908	Mug1	-	murinoglobulin 1	protein-coding	0.010000	0.417910	
mm_62622.1	chr7	107567332	107567532	+	1	NA	NA	NA	-1	NM_172907	244198	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	0.015000	0.567164	-84(GTCTATTAAGGA,-,0.00)
mm_57343.1	chr6	124747315	124747515	-	1	NA	NA	NA	-6336	NM_013535	14790	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.000000	0.592040	
mm_82512.1	chr9	20521266	20521466	-	1	NA	NA	NA	53	NM_001135019	77519	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	0.110000	0.686567	
mm_70081.1	chr7	142653840	142654040	-	1	NA	NA	NA	1056	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.075000	0.626866	
mm_64459.1	chr7	142660536	142660736	+	1	NA	NA	NA	635	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.085000	0.676617	-88(GCCTCTAAAGGG,-,0.00),-87(CCTCTAAAGGGC,+,0.00)
mm_33304.1	chr4	129033341	129033541	+	1	NA	NA	NA	-24830	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.020000	0.537313	
mm_148805.1	chr19	6275825	6276025	+	1	NA	NA	NA	-971	NM_010119	13660	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.005000	0.517413	
mm_31331.1	chr4	46451052	46451252	+	1	NA	NA	NA	226	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.135000	0.771144	
mm_30937.1	chr4	32983429	32983629	+	1	NA	NA	NA	531	NM_027491	52187	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	0.105000	0.721393	
mm_134439.1	chr16	18247277	18247477	-	1	NA	NA	NA	1317	NM_011239	19385	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	0.030000	0.467662	
mm_105222.1	chr11	102224697	102224897	-	1	NA	NA	NA	5353	NR_106179	102465892		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0.055000	0.636816	
mm_57968.1	chr6	135319461	135319661	-	1	NA	NA	NA	-9177	NM_029595	76400	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	0.015000	0.492537	-84(CCTTTTCAACGG,+,0.00),-33(GGCCATAAATGA,-,0.00)
mm_151416.1	chr19	56722047	56722247	+	1	NA	NA	NA	-225	NM_007419	11554	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.120000	0.756219	
mm_33482.1	chr4	130818848	130819048	+	1	NA	NA	NA	26411	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.030000	0.656716	
mm_26260.1	chr3	142500513	142500713	+	1	NA	NA	NA	3679	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.010000	0.517413	
mm_148792.1	chr19	6165645	6165845	+	1	NA	NA	NA	1287	NM_028967	74481	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	4933430F08Rik	basic leucine zipper transcription factor, ATF-like 2	protein-coding	0.010000	0.487562	
mm_122260.1	chr14	34274140	34274340	-	1	NA	NA	NA	36263	NM_029389	75698	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	0.010000	0.437811	
mm_157848.1	chrX	74393139	74393339	-	1	NA	NA	NA	35	NM_025473	66294	Mm.166485	NM_025473	ENSMUSG00000031399	Fam3a	1810037C20Rik	family with sequence similarity 3, member A	protein-coding	0.055000	0.641791	
mm_144107.1	chr18	4165762	4165962	+	1	NA	NA	NA	30	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.010000	0.467662	
mm_11733.1	chr2	37516499	37516699	+	1	NA	NA	NA	-27	NM_177383	338346	Mm.445325	NM_177383	ENSMUSG00000053164	Gpr21	C230004C13Rik	G protein-coupled receptor 21	protein-coding	0.010000	0.532338	
mm_6008.1	chr1	58973356	58973556	-	1	NA	NA	NA	26	NM_172406	70827	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	0.055000	0.621891	
mm_18170.1	chr2	45106802	45107002	-	1	NA	NA	NA	3375	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.025000	0.452736	-5(TTTTAAAAAGCC,+,0.00)
mm_156021.1	chrX	107148896	107149096	+	1	NA	NA	NA	69	NM_001122596	213438	Mm.265244	NM_175442	ENSMUSG00000054293	A630033H20Rik	AI662791|P2ry10	RIKEN cDNA A630033H20 gene	protein-coding	0.010000	0.393035	
mm_57422.1	chr6	124913882	124914082	-	1	NA	NA	NA	-2277	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.015000	0.592040	
mm_87763.1	chr10	60292407	60292607	+	1	NA	NA	NA	8046	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.502488	
mm_156125.1	chrX	116658974	116659174	+	1	NA	NA	NA	-22104	NM_001281530	624153		NM_001281530	ENSMUSG00000082482	H2afb2	EG624153|H2A.Bbd4|H2afb2-ps	H2A histone family, member B2	protein-coding	0.010000	0.437811	
mm_43121.1	chr5	124862115	124862315	+	1	NA	NA	NA	6	NM_144819	215707	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.150000	0.726368	
mm_41127.1	chr5	87786544	87786744	+	1	NA	NA	NA	12194	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.005000	0.383085	
mm_162673.1	chr10	7473476	7473676	-	1	NA	NA	NA	-99	NM_029975	77777	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	0.040000	0.567164	
mm_135506.1	chr16	46498464	46498664	-	1	NA	NA	NA	-1597	NM_021497	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.020000	0.527363	
mm_82274.1	chr9	7352944	7353144	-	1	NA	NA	NA	5670	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.402985	
mm_56224.1	chr6	90232726	90232926	-	1	NA	NA	NA	-8388	NM_053226	113853	Mm.434332	NM_053226	ENSMUSG00000057697	Vmn1r53	V1rb3|VN5	vomeronasal 1 receptor 53	protein-coding	0.080000	0.606965	80(GCTCATAAAGGC,+,0.00)
mm_49934.1	chr6	39446810	39447010	+	1	NA	NA	NA	-26541	NM_018810	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.000000	0.308458	
mm_14215.1	chr2	127337456	127337656	+	1	NA	NA	NA	-1083	NM_172539	215095	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	0.020000	0.567164	
mm_162538.1	chr1	168432476	168432676	+	1	NA	NA	NA	-407	NM_008783	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.045000	0.527363	-31(GTTCTTAAAGGC,+,0.00)
mm_94341.1	chr11	4729792	4729992	+	1	NA	NA	NA	16886	NM_138948	192650	Mm.207056	NM_138948	ENSMUSG00000009075	Cabp7	-	calcium binding protein 7	protein-coding	0.045000	0.597015	
mm_21164.1	chr2	154613115	154613315	-	1	NA	NA	NA	-153	NM_199304	228807	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	0.115000	0.691542	
mm_32685.1	chr4	115834872	115835072	+	1	NA	NA	NA	-4226	NM_001285488	17346	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0.010000	0.502488	
mm_58926.1	chr7	17972066	17972266	+	1	NA	NA	NA	-1	NM_023289	66996	Mm.36666	NM_023289	ENSMUSG00000030368	Ceacam11	1600015D01Rik	carcinoembryonic antigen-related cell adhesion molecule 11	protein-coding	0.015000	0.487562	
mm_170875.1	chr2	20899838	20900038	+	1	NA	NA	NA	67783	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.075000	0.562189	
mm_144853.1	chr18	36664015	36664215	+	1	NA	NA	NA	55	NM_201256	108112	Mm.24790	NM_201256	ENSMUSG00000090264	Eif4ebp3	4e-bp3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding	0.040000	0.577114	
mm_60779.1	chr7	45564930	45565130	+	1	NA	NA	NA	-5123	NM_009737	12036	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.000000	0.492537	
mm_125081.1	chr15	26308923	26309123	+	1	NA	NA	NA	-25	NM_177597	211147	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0.110000	0.746269	
mm_137223.1	chr17	24251570	24251770	+	1	NA	NA	NA	-261	NM_007634	12449	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	0.085000	0.651741	-40(TCCTAAAAAGCC,+,0.00)
mm_97917.1	chr11	83525915	83526115	+	1	NA	NA	NA	-3916	NM_001045543	629303	Mm.390417	NM_001045543	ENSMUSG00000018925	Heatr9	Gm11435|OTTMUSG00000000990	HEAT repeat containing 9	protein-coding	0.020000	0.497512	
mm_163497.1	chr12	111713233	111713433	+	1	NA	NA	NA	64	NM_026511	68020	Mm.425762	NM_026511	ENSMUSG00000037787	Apopt1	1700081D05Rik|2810002N01Rik|Apop-1|Apop1	apoptogenic, mitochondrial 1	protein-coding	0.160000	0.706468	
mm_157051.1	chrX	8038912	8039112	-	1	NA	NA	NA	-20520	NM_027227	69824	Mm.279756	NM_027227	ENSMUSG00000031163	Glod5	2010001H14Rik|AV061890	glyoxalase domain containing 5	protein-coding	0.020000	0.462687	-34(CCTTATAGATAC,+,0.00)
mm_133667.1	chr16	92060052	92060252	+	1	NA	NA	NA	1816	NM_080456	121022	Mm.217354	NM_080456	ENSMUSG00000039680	Mrps6	AW046321	mitochondrial ribosomal protein S6	protein-coding	0.010000	0.338308	
mm_168319.1	chr11	114668442	114668642	+	1	NA	NA	NA	-1	NM_023372	67671	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.055000	0.547264	
mm_136978.1	chr17	15777470	15777670	+	1	NA	NA	NA	49016	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.020000	0.447761	
mm_126816.1	chr15	88708374	88708574	+	1	NA	NA	NA	25745	NM_001033274	223770	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	0.015000	0.537313	
mm_87142.1	chr10	34483365	34483565	+	1	NA	NA	NA	65	NM_010237	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.020000	0.492537	-39(CCTTTTAGATCA,+,0.00)
mm_43808.1	chr5	142904081	142904281	+	1	NA	NA	NA	2573	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.010000	0.462687	
mm_11120.1	chr2	28208061	28208261	+	1	NA	NA	NA	2472	NM_019498	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.030000	0.606965	
mm_150641.1	chr19	41831174	41831374	+	1	NA	NA	NA	1304	NM_008043	14296	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	0.045000	0.502488	
mm_132896.1	chr16	48844135	48844335	+	1	NA	NA	NA	1683	NM_020509	57262	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0.010000	0.527363	
mm_42829.1	chr5	122101053	122101253	+	1	NA	NA	NA	173	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.010000	0.611940	
mm_118298.1	chr13	113079079	113079279	-	1	NA	NA	NA	21802	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.025000	0.487562	
mm_117345.1	chr13	69611224	69611424	-	1	NA	NA	NA	139	NM_175283	78925	Mm.451912	NM_175283	ENSMUSG00000021594	Srd5a1	0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1	steroid 5 alpha-reductase 1	protein-coding	0.045000	0.636816	19(GCTTATATGTGG,+,0.00)
mm_109571.1	chr12	112106764	112106964	+	1	NA	NA	NA	181	NM_001081169	104816	Mm.77133	NM_001081169	ENSMUSG00000037686	Aspg	A530050D06Rik|AI429460|Gm690	asparaginase	protein-coding	0.050000	0.631841	
mm_115779.1	chr13	19311352	19311552	-	1	NA	NA	NA	84361	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.363184	
mm_78758.1	chr9	43303120	43303320	+	1	NA	NA	NA	-7543	NM_023655	72169	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	0.005000	0.442786	
mm_58317.1	chr6	146442929	146443129	-	1	NA	NA	NA	59194	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.005000	0.402985	
mm_24564.1	chr3	93443798	93443998	+	1	NA	NA	NA	1568	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.065000	0.582090	
mm_13305.1	chr2	102658196	102658396	+	1	NA	NA	NA	-387	NM_001077514	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.045000	0.582090	
mm_153183.1	chr19	34498914	34499114	-	1	NA	NA	NA	-23879	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.015000	0.437811	
mm_171795.1	chr5	118052509	118052709	+	1	NA	NA	NA	24785	NM_021344	57816	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	0.015000	0.517413	
mm_52766.1	chr6	120932782	120932982	+	1	NA	NA	NA	-16062	NM_007544	12122	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	0.035000	0.517413	
mm_25418.1	chr3	107600337	107600537	+	1	NA	NA	NA	5406	NM_007441	11694	Mm.10112	NM_007441	ENSMUSG00000014603	Alx3	-	aristaless-like homeobox 3	protein-coding	0.020000	0.597015	
mm_139904.1	chr17	70865600	70865800	+	1	NA	NA	NA	-12168	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.010000	0.537313	-29(CTCTATTTAAAC,-,0.00)
mm_13197.1	chr2	93315288	93315488	+	1	NA	NA	NA	19099	NM_183180	241556	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	0.020000	0.537313	
mm_70523.1	chr8	12949423	12949623	+	1	NA	NA	NA	105	NM_001159485	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.015000	0.611940	
mm_36332.1	chr4	72169448	72169648	-	1	NA	NA	NA	31345	NM_011599	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.000000	0.263682	
mm_103210.1	chr11	70652940	70653140	-	1	NA	NA	NA	1610	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.010000	0.477612	
mm_68636.1	chr7	118243503	118243703	-	1	NA	NA	NA	34	NM_001031814	233789	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	0.160000	0.796020	
mm_113947.1	chr13	50417793	50417993	+	1	NA	NA	NA	16	NM_175401	109082	Mm.18638	NM_175401	ENSMUSG00000037816	Fbxw17	1110064L07Rik|C85886	F-box and WD-40 domain protein 17	protein-coding	0.085000	0.646766	
mm_108966.1	chr12	102439541	102439741	+	1	NA	NA	NA	172	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.090000	0.641791	
mm_58014.1	chr6	136555520	136555720	-	1	NA	NA	NA	36769	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.015000	0.442786	
mm_97012.1	chr11	71019475	71019675	+	1	NA	NA	NA	-36	NM_025993	67139	Mm.28227	NM_025993	ENSMUSG00000040599	Mis12	2510025F08Rik|AU044651|Misc12	MIS12 kinetochore complex component	protein-coding	0.070000	0.592040	
mm_101226.1	chr11	20249297	20249497	-	1	NA	NA	NA	27	NM_172260	216543	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.125000	0.726368	
mm_66234.1	chr7	35275437	35275637	-	1	NA	NA	NA	42903	NM_026181	67471	Mm.358705	NM_026181	ENSMUSG00000063808	Gpatch1	1300003A17Rik|ECGP|Gpatc1	G patch domain containing 1	protein-coding	0.055000	0.656716	
mm_54409.1	chr6	31563884	31564084	-	1	NA	NA	NA	-47	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	0.130000	0.781095	
mm_122425.1	chr14	44859256	44859456	-	1	NA	NA	NA	19	NM_008962	19214	Mm.5105	NM_008962	ENSMUSG00000071489	Ptgdr	DP|PGD	prostaglandin D receptor	protein-coding	0.015000	0.606965	
mm_160455.1	chr8	106870142	106870342	+	1	NA	NA	NA	0	NM_008217	15118	Mm.56986	NM_008217	ENSMUSG00000031910	Has3	-	hyaluronan synthase 3	protein-coding	0.030000	0.467662	-92(GCTTTAAGACCG,+,0.00)
mm_138268.1	chr17	34604195	34604395	+	1	NA	NA	NA	-734	NM_019403	54197	Mm.274542	NM_019403	ENSMUSG00000015478	Rnf5	2410131O05Rik|AA407576|NG2	ring finger protein 5	protein-coding	0.070000	0.646766	
mm_119099.1	chr14	30896830	30897030	+	1	NA	NA	NA	10454	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.005000	0.542289	
mm_115737.1	chr13	17797279	17797479	-	1	NA	NA	NA	7718	NM_001081058	69562	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.000000	0.293532	
mm_104735.1	chr11	98329548	98329748	-	1	NA	NA	NA	-3	NM_010895	18013	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0.090000	0.671642	
mm_90562.1	chr10	128194638	128194838	+	1	NA	NA	NA	103	NM_001285779	216456	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	0.145000	0.776119	
mm_71019.1	chr8	33414509	33414709	+	1	NA	NA	NA	28284	NM_001098233	75029	Mm.159402	NM_152821	ENSMUSG00000049184	Purg	4930486B15Rik	purine-rich element binding protein G	protein-coding	0.005000	0.308458	
mm_47427.1	chr5	123172156	123172356	-	1	NA	NA	NA	10430	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.025000	0.537313	
mm_103150.1	chr11	70345613	70345813	-	1	NA	NA	NA	6318	NM_009660	11687	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	0.030000	0.567164	
mm_928.1	chr1	55405824	55406024	+	1	NA	NA	NA	-22	NM_001114663	227120	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.115000	0.736318	
mm_25086.1	chr3	100685469	100685669	+	1	NA	NA	NA	-96	NM_010763	17156	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0.115000	0.746269	
mm_120972.1	chr14	78384675	78384875	+	1	NA	NA	NA	-76732	NM_011613	21943	Mm.249221	NM_011613	ENSMUSG00000022015	Tnfsf11	Ly109l|ODF|OPGL|RANKL|Trance	tumor necrosis factor (ligand) superfamily, member 11	protein-coding	0.000000	0.383085	
mm_81659.1	chr9	110992683	110992883	+	1	NA	NA	NA	-3070	NM_153100	235636	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	0.010000	0.482587	
mm_157730.1	chrX	70477031	70477231	-	1	NA	NA	NA	-88	NM_001033328	236848	Mm.24569	NM_001033328	ENSMUSG00000073139	Tmem185a	-	transmembrane protein 185A	protein-coding	0.095000	0.676617	
mm_165017.1	chr19	29806094	29806294	+	1	NA	NA	NA	-185	NM_172836	240613	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	ENSMUSG00000048936|Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	0.140000	0.820896	
mm_84426.1	chr9	65827582	65827782	-	1	NA	NA	NA	-118	NM_172536	214812	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	0.160000	0.791045	
mm_56129.1	chr6	87590628	87590828	-	1	NA	NA	NA	-27	NM_021381	58182	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pkr1	prokineticin receptor 1	protein-coding	0.060000	0.646766	
mm_32858.1	chr4	118359977	118360177	+	1	NA	NA	NA	78	NR_003946	68180	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	0.125000	0.736318	
mm_146704.1	chr18	13903350	13903550	-	1	NA	NA	NA	69283	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.015000	0.338308	
mm_63352.1	chr7	126976434	126976634	+	1	NA	NA	NA	620	NM_001347656	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.080000	0.666667	
mm_15330.1	chr2	155754962	155755162	+	1	NA	NA	NA	3845	NM_011171	19124	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	0.005000	0.482587	
mm_164896.1	chr18	65459705	65459905	+	1	NA	NA	NA	28808	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.388060	
mm_137617.1	chr17	28272098	28272298	+	1	NA	NA	NA	490	NR_045427	69050	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0.035000	0.621891	
mm_130438.1	chr15	98296036	98296236	-	1	NA	NA	NA	-53	NM_173769	239652	Mm.207453	NM_173769	ENSMUSG00000022987	Zfp641	9930016F01Rik|Znf641	zinc finger protein 641	protein-coding	0.130000	0.771144	
mm_59116.1	chr7	19824389	19824589	+	1	NA	NA	NA	-1734	NM_033601	12051	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.020000	0.547264	
mm_136446.1	chr16	94918287	94918487	-	1	NA	NA	NA	-61697	NM_001025590	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.005000	0.537313	
mm_977.1	chr1	58393390	58393590	+	1	NA	NA	NA	354	NM_025824	66882	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.175000	0.800995	
mm_80796.1	chr9	96258620	96258820	+	1	NA	NA	NA	15	NM_001184709	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.010000	0.517413	
mm_58798.1	chr7	16175357	16175557	+	1	NA	NA	NA	62	NR_102730	17537	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0.125000	0.726368	
mm_58390.1	chr7	3206826	3207026	+	1	NA	NA	NA	-11700	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.000000	0.472637	
mm_46399.1	chr5	104092795	104092995	-	1	NA	NA	NA	-15287	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.010000	0.502488	
mm_824.1	chr1	47917341	47917541	+	1	NA	NA	NA	-450316	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA	0.000000	0.358209	-73(CCTTTTCTACAG,+,0.00)
mm_59907.1	chr7	30360503	30360703	+	1	NA	NA	NA	2169	NM_175478	233067	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	0.080000	0.621891	
mm_52572.1	chr6	116337948	116338148	+	1	NA	NA	NA	26	NM_027920	71779	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	0.145000	0.736318	
mm_10412.1	chr2	13579363	13579563	+	1	NA	NA	NA	5152	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.030000	0.517413	68(TGCCCTTAAAGG,-,0.00),69(GCCCTTAAAGGC,+,0.00),69(GCCCTTAAAGGC,-,0.00),70(CCCTTAAAGGCA,+,0.00),71(CCTTAAAGGCAC,+,0.00)
mm_106290.1	chr11	118211760	118211960	-	1	NA	NA	NA	882	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.005000	0.522388	
mm_163976.1	chr14	55758358	55758558	-	1	NA	NA	NA	-34	NM_009894	12684	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	0.020000	0.462687	
mm_147095.1	chr18	35649262	35649462	-	1	NA	NA	NA	5	NM_027222	69816	Mm.27252	NM_027222	ENSMUSG00000024353	Mzb1	2010001M09Rik|AV064572|PACAP|pERp1	marginal zone B and B1 cell-specific protein 1	protein-coding	0.040000	0.582090	
mm_127188.1	chr15	99029839	99030039	+	1	NA	NA	NA	48	NM_009448	22146	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.065000	0.691542	
mm_99531.1	chr11	103192316	103192516	+	1	NA	NA	NA	16132	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.030000	0.507463	
mm_84748.1	chr9	75409517	75409717	-	1	NA	NA	NA	-258	NM_027418	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.180000	0.845771	
mm_79231.1	chr9	50494425	50494625	+	1	NA	NA	NA	0	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.015000	0.577114	
mm_70211.1	chr7	144914516	144914716	-	1	NA	NA	NA	-484	NM_001347536	72284	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	0.015000	0.383085	
mm_13762.1	chr2	118388560	118388760	+	1	NA	NA	NA	43	NM_013719	27103	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	0.100000	0.741294	
mm_123923.1	chr14	73365431	73365631	-	1	NA	NA	NA	19740	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.020000	0.442786	
mm_93086.1	chr10	89600606	89600806	-	1	NA	NA	NA	-891	NM_001310710	216227	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	0.005000	0.303483	-77(GCTCTTAAAAAG,-,0.00)
mm_104993.1	chr11	100322946	100323146	-	1	NA	NA	NA	3097	NM_011508	20918	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.005000	0.432836	-34(AAGTATAAAAGA,-,0.00)
mm_58075.1	chr6	136924226	136924426	-	1	NA	NA	NA	-2146	NM_026983	69187	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding	0.020000	0.517413	
mm_149100.1	chr19	8942067	8942267	+	1	NA	NA	NA	247	NM_011842	23942	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	0.125000	0.676617	
mm_114159.1	chr13	55411944	55412144	+	1	NA	NA	NA	3188	NM_029303	75477	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	0.015000	0.577114	
mm_117072.1	chr13	59242515	59242715	-	1	NA	NA	NA	301836	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.005000	0.388060	
mm_3917.1	chr1	162217805	162218005	+	1	NA	NA	NA	91	NR_029810	723821		NR_029810	ENSMUSG00000070126	Mir199a-2	Mirn199a-2|mir-199a-2	microRNA 199a-2	ncRNA	0.030000	0.547264	
mm_161536.1	chr15	102921161	102921361	+	1	NA	NA	NA	130	NM_010464	15422	Mm.207062	NM_010464	ENSMUSG00000001655	Hoxc13	-	homeobox C13	protein-coding	0.130000	0.701493	
mm_129124.1	chr15	76126444	76126644	-	1	NA	NA	NA	12	NM_001142968	271278	Mm.205253	NM_198172	ENSMUSG00000044361	BC024139	6230424I18Rik	cDNA sequence BC024139	protein-coding	0.005000	0.577114	
mm_163561.1	chr13	24634562	24634762	+	1	NA	NA	NA	-3986	NM_001080381	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.015000	0.512438	
mm_147400.1	chr18	44555830	44556030	-	1	NA	NA	NA	-105735	NR_026853	626275	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	0.000000	0.467662	
mm_35602.1	chr4	43040160	43040360	-	1	NA	NA	NA	41	NM_001253353	230088	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0.090000	0.756219	
mm_100545.1	chr11	120703895	120704095	+	1	NA	NA	NA	9772	NM_016665	20892	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0.010000	0.577114	
mm_172937.1	chr9	78809468	78809668	-	1	NA	NA	NA	194022	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.020000	0.522388	-31(GCCTATATAAGC,-,0.00)
mm_54130.1	chr6	18848395	18848595	-	1	NA	NA	NA	-140	NM_133939	76522	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	0.080000	0.646766	
mm_76975.1	chr8	106337892	106338092	-	1	NA	NA	NA	-4	NM_021491	58994	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0.110000	0.686567	
mm_6540.1	chr1	74968189	74968389	-	1	NA	NA	NA	-16617	NM_010544	16147	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	0.015000	0.492537	
mm_32158.1	chr4	99969585	99969785	+	1	NA	NA	NA	40234	NM_028132	72157	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.000000	0.407960	-32(CTCTTTATAGAA,+,0.00)
mm_122989.1	chr14	54989006	54989206	-	1	NA	NA	NA	5443	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.025000	0.532338	
mm_46863.1	chr5	113820010	113820210	-	1	NA	NA	NA	10391	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.030000	0.582090	
mm_45718.1	chr5	84417298	84417498	-	1	NA	NA	NA	-16	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.135000	0.731343	
mm_52391.1	chr6	113301462	113301662	+	1	NA	NA	NA	-5575	NM_030178	78783	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.005000	0.507463	
mm_155296.1	chrX	61185317	61185517	+	1	NA	NA	NA	141	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.030000	0.447761	
mm_159834.1	chr5	129548940	129549140	+	1	NA	NA	NA	-35129	NM_011846	23948	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	0.020000	0.417910	
mm_133096.1	chr16	64851894	64852094	+	1	NA	NA	NA	-91	NM_178647	106143	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.135000	0.731343	
mm_81127.1	chr9	106477216	106477416	+	1	NA	NA	NA	7	NM_145620	27966	Mm.239997	NM_145620	ENSMUSG00000041506	Rrp9	55kDa|D19435|D9Wsu10e|Rnu3ip2|U3-55k	RRP9, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0.085000	0.671642	
mm_73897.1	chr8	119425847	119426047	+	1	NA	NA	NA	-11215	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.015000	0.537313	
mm_149902.1	chr19	25551995	25552195	+	1	NA	NA	NA	46389	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.010000	0.522388	
mm_43040.1	chr5	124032458	124032658	+	1	NA	NA	NA	-298	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.005000	0.427861	
mm_117146.1	chr13	61040526	61040726	-	1	NA	NA	NA	-29	NM_029636	104002	Mm.46088	NM_029636	ENSMUSG00000021439	Ctsq	1600010J02Rik	cathepsin Q	protein-coding	0.015000	0.492537	
mm_18560.1	chr2	65238501	65238701	-	1	NA	NA	NA	25	NM_177025	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.155000	0.830846	
mm_96496.1	chr11	67980394	67980594	+	1	NA	NA	NA	14011	NM_018768	55943	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	0.010000	0.393035	4(GCTTATAAAGTA,+,0.00)
mm_24588.1	chr3	93444946	93445146	+	1	NA	NA	NA	2716	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.045000	0.616915	
mm_85411.1	chr9	103424883	103425083	-	1	NA	NA	NA	1405	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.025000	0.542289	
mm_130254.1	chr15	96642119	96642319	-	1	NA	NA	NA	124	NM_001166456	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.065000	0.587065	
mm_32452.1	chr4	107367685	107367885	+	1	NA	NA	NA	1	NM_028355	72787	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0.055000	0.572139	
mm_165409.1	chr2	144116113	144116313	+	1	NA	NA	NA	73077	NR_136884	433481	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.010000	0.517413	
mm_122754.1	chr14	54206530	54206730	-	1	NA	NA	NA	47299	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.497512	
mm_97114.1	chr11	74770749	74770949	+	1	NA	NA	NA	-14	NM_026197	67493	Mm.45748	NM_026197	ENSMUSG00000010554	Mettl16	2610100D03Rik|2810013M15Rik|A830095F14Rik|AI846133|Mett10d	methyltransferase like 16	protein-coding	0.080000	0.567164	
mm_42193.1	chr5	112276625	112276825	+	1	NA	NA	NA	34	NM_009419	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.135000	0.746269	
mm_42223.1	chr5	113445614	113445814	+	1	NA	NA	NA	88420	NM_001012726	503692	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	0.000000	0.517413	
mm_160207.1	chr7	84963860	84964060	-	1	NA	NA	NA	49	NM_001105180	100009609	Mm.389926	NM_001105180	ENSMUSG00000066372	Vmn2r65	ENSMUSG00000070600|V2ro	vomeronasal 2, receptor 65	protein-coding	0.000000	0.373134	
mm_108400.1	chr12	81152388	81152588	+	1	NA	NA	NA	-13663	NR_037227	100526532		NR_037227	ENSMUSG00000092673	Mir3067	mir-3067|mmu-mir-3067	microRNA 3067	ncRNA	0.020000	0.512438	71(GCTTTAATGCCC,+,0.00),85(GCTTCTAAAAAG,-,0.00)
mm_167694.1	chr9	88273492	88273692	+	1	NA	NA	NA	-54017	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	0.005000	0.482587	
mm_76157.1	chr8	82358449	82358649	-	1	NA	NA	NA	44037	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.005000	0.447761	
mm_52131.1	chr6	97944450	97944650	+	1	NA	NA	NA	14733	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.010000	0.452736	
mm_5245.1	chr1	16519210	16519410	-	1	NA	NA	NA	-8	NM_001111272	29819	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen (RNA binding protein) homolog 2 (Drosophila)	protein-coding	0.185000	0.830846	
mm_82713.1	chr9	24503238	24503438	-	1	NA	NA	NA	-198	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.205000	0.815920	
mm_19625.1	chr2	102813427	102813627	-	1	NA	NA	NA	88138	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.000000	0.308458	
mm_110056.1	chr12	20921127	20921327	-	1	NA	NA	NA	-105448	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.110000	0.736318	
mm_33705.1	chr4	133632996	133633196	+	1	NA	NA	NA	333	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.120000	0.716418	
mm_170093.1	chr17	36231461	36231661	-	1	NA	NA	NA	26285	NM_026308	67676	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0.105000	0.666667	
mm_58245.1	chr6	145048582	145048782	-	1	NA	NA	NA	130	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.115000	0.681592	
mm_123204.1	chr14	59341242	59341442	-	1	NA	NA	NA	-12	NM_001164327	236451	Mm.247736	NM_001164327	ENSMUSG00000091649	Phf11b	EG236451|Gm4902	PHD finger protein 11B	protein-coding	0.005000	0.497512	
mm_82537.1	chr9	20746293	20746493	-	1	NA	NA	NA	-18179	NM_173777	244723	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.110000	0.796020	
mm_81082.1	chr9	106224219	106224419	+	1	NA	NA	NA	1721	NM_031178	81897	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	0.015000	0.557214	
mm_127481.1	chr15	101274343	101274543	+	1	NA	NA	NA	7597	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.015000	0.482587	
mm_146794.1	chr18	20549262	20549462	-	1	NA	NA	NA	-8712	NM_007883	13511	Mm.345891	NM_007883	ENSMUSG00000044393	Dsg2	AA408168|D18Ertd293e	desmoglein 2	protein-coding	0.010000	0.447761	
mm_6992.1	chr1	86358122	86358322	-	1	NA	NA	NA	1233	NM_010880	17975	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	0.015000	0.447761	
mm_19381.1	chr2	91202569	91202769	-	1	NA	NA	NA	-243	NM_007387	11432	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.045000	0.562189	-25(GGGCAGAAAAGG,-,0.00)
mm_48347.1	chr5	139325429	139325629	-	1	NA	NA	NA	-65	NM_172723	231821	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.195000	0.820896	
mm_150910.1	chr19	46056470	46056670	+	1	NA	NA	NA	31	NM_001081214	226169	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	0.105000	0.676617	
mm_11328.1	chr2	30441734	30441934	+	1	NA	NA	NA	25784	NM_138748	110854	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.010000	0.522388	-83(GCCTTTAAGAGC,-,0.00),-82(CCTTTAAGAGCC,+,0.00)
mm_79246.1	chr9	50565257	50565457	+	1	NA	NA	NA	-11	NM_008360	16173	Mm.1410	NM_008360	ENSMUSG00000039217	Il18	Igif|Il-18	interleukin 18	protein-coding	0.010000	0.592040	
mm_104841.1	chr11	99209896	99210096	-	1	NA	NA	NA	21021	NM_020618	57376	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	0.015000	0.353234	-7(GTTTTAATGGTG,+,0.00)
mm_48198.1	chr5	137531120	137531320	-	1	NA	NA	NA	-1626	NR_105846	102465227		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0.055000	0.626866	
mm_40081.1	chr5	34462078	34462278	+	1	NA	NA	NA	51801	NM_139064	231130	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0.025000	0.567164	
mm_8046.1	chr1	135371786	135371986	-	1	NA	NA	NA	3177	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.015000	0.547264	
mm_118311.1	chr13	113101843	113102043	-	1	NA	NA	NA	-962	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.030000	0.527363	
mm_137521.1	chr17	27325096	27325296	+	1	NA	NA	NA	-3189	NR_106075	102466818		NR_106075	ENSMUSG00000099237	Mir7216	Gm27555|mmu-mir-7216	microRNA 7216	ncRNA	0.040000	0.606965	
mm_86255.1	chr9	121495584	121495784	-	1	NA	NA	NA	10	NM_001284508	12424	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.035000	0.587065	-14(AGCTATTTAAGA,-,0.00)
mm_43615.1	chr5	138085078	138085278	+	1	NA	NA	NA	94	NM_029869	74570	Mm.213114	NM_029869	ENSMUSG00000029729	Zkscan1	5930429A01Rik|9130423L19Rik|9230118B16Rik|AI646829|AI788588|C87323|KOX18|PHZ-37|ZNF139	zinc finger with KRAB and SCAN domains 1	protein-coding	0.080000	0.646766	
mm_145729.1	chr18	64264525	64264725	+	1	NA	NA	NA	10266	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.025000	0.432836	-92(AAGTATATAAGG,-,0.00),73(GCTTTTAAACGT,+,0.00)
mm_170548.1	chr19	4064176	4064376	-	1	NA	NA	NA	-4982	NM_144869	225884	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.000000	0.422886	
mm_136660.1	chr17	6007509	6007709	+	1	NA	NA	NA	29	NM_001290698	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.015000	0.577114	
mm_146596.1	chr18	9449895	9450095	-	1	NA	NA	NA	155	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.165000	0.741294	
mm_143685.1	chr17	80062248	80062448	-	1	NA	NA	NA	-80	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.085000	0.651741	
mm_134146.1	chr16	10784743	10784943	-	1	NA	NA	NA	693	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.095000	0.711443	
mm_166280.1	chr5	92817730	92817930	+	1	NA	NA	NA	8448	NM_001077595	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.000000	0.293532	47(CACCAGAAAAGG,-,0.00)
mm_69693.1	chr7	139992445	139992645	-	1	NA	NA	NA	17	NM_007403	11501	Mm.15969	NM_007403	ENSMUSG00000025473	Adam8	ADAM 8|CD156|CD156a|E430039A18Rik|MS2	a disintegrin and metallopeptidase domain 8	protein-coding	0.030000	0.562189	
mm_11025.1	chr2	26731621	26731821	+	1	NA	NA	NA	-60439	NM_010695	16821	Mm.123925	NM_010695	ENSMUSG00000026919	Lcn4	A630045M08Rik|Vnsp2	lipocalin 4	protein-coding	0.020000	0.497512	
mm_104842.1	chr11	99230347	99230547	-	1	NA	NA	NA	570	NM_020618	57376	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	0.145000	0.746269	
mm_143639.1	chr17	79020743	79020943	-	1	NA	NA	NA	-27	NM_029239	75292	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	0.165000	0.820896	
mm_128100.1	chr15	27876402	27876602	-	1	NA	NA	NA	149346	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.030000	0.557214	
mm_50940.1	chr6	57823618	57823818	+	1	NA	NA	NA	1407	NM_146168	232023	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.010000	0.368159	
mm_95939.1	chr11	58382705	58382905	+	1	NA	NA	NA	2159	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.010000	0.497512	
mm_48769.1	chr5	148399807	148400007	-	1	NA	NA	NA	-3	NM_007513	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.160000	0.776119	
mm_76367.1	chr8	84793208	84793408	-	1	NA	NA	NA	7030	NM_010906	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.025000	0.562189	
mm_79085.1	chr9	46242433	46242633	+	1	NA	NA	NA	1689	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.030000	0.547264	
mm_77419.1	chr8	120715993	120716193	-	1	NA	NA	NA	-20265	NM_008320	15900	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.040000	0.567164	
mm_43156.1	chr5	125849905	125850105	+	1	NA	NA	NA	317587	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0.015000	0.497512	
mm_92269.1	chr10	71159564	71159764	-	1	NA	NA	NA	26	NM_031397	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	BicC family RNA binding protein 1	protein-coding	0.190000	0.840796	
mm_109532.1	chr12	111539341	111539541	+	1	NA	NA	NA	1340	NM_173363	217869	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.025000	0.462687	
mm_76794.1	chr8	102785270	102785470	-	1	NA	NA	NA	-259	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.045000	0.651741	
mm_38674.1	chr4	144892381	144892581	-	1	NA	NA	NA	-346	NM_001172424	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.075000	0.557214	
mm_63394.1	chr7	127296131	127296331	+	1	NA	NA	NA	-29	NM_001253873	16408	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.020000	0.527363	
mm_129050.1	chr15	75431660	75431860	-	1	NA	NA	NA	69	NR_108041	105892	Mm.38909	NM_001039720	ENSMUSG00000053168	9030619P08Rik	-	lymphocyte antigen 6 complex pseudogene	pseudo	0.000000	0.492537	
mm_109758.1	chr12	117843617	117843817	+	1	NA	NA	NA	-144	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.165000	0.756219	
mm_171391.1	chr4	122259945	122260145	+	1	NA	NA	NA	-429214	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	0.000000	0.288557	
mm_63054.1	chr7	121905555	121905755	+	1	NA	NA	NA	40617	NR_073548	20277	Mm.7709	NM_011325	ENSMUSG00000030873	Scnn1b	-	sodium channel, nonvoltage-gated 1 beta	protein-coding	0.020000	0.517413	
mm_73730.1	chr8	113635715	113635915	+	1	NA	NA	NA	16	NM_173015	270096	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	0.065000	0.592040	
mm_118968.1	chr14	27768462	27768662	+	1	NA	NA	NA	146155	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	0.005000	0.348259	86(TCTTTTAGACTC,+,0.00)
mm_117815.1	chr13	97820425	97820625	-	1	NA	NA	NA	260525	NR_046157	328314	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.020000	0.477612	
mm_144512.1	chr18	24709342	24709542	+	1	NA	NA	NA	819	NM_001289655	225288	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0.125000	0.781095	
mm_103224.1	chr11	70668565	70668765	-	1	NA	NA	NA	751	NM_172561	216873	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0.020000	0.497512	
mm_104428.1	chr11	94950770	94950970	-	1	NA	NA	NA	14646	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.030000	0.532338	
mm_44826.1	chr5	33782718	33782918	-	1	NA	NA	NA	-114	NM_019694	56384	Mm.260538	NM_019694	ENSMUSG00000005299	Letm1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding	0.085000	0.661692	
mm_135790.1	chr16	57167237	57167437	-	1	NA	NA	NA	-5	NM_023175	52633	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.085000	0.661692	
mm_56968.1	chr6	120187560	120187760	-	1	NA	NA	NA	-6163	NM_001347432	29862	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.025000	0.532338	
mm_48393.1	chr5	139819819	139820019	-	1	NA	NA	NA	-5636	NM_001161548	231832	Mm.482655	NM_144914	ENSMUSG00000036687	Tmem184a	Sdmg1	transmembrane protein 184a	protein-coding	0.005000	0.616915	
mm_58911.1	chr7	17672147	17672347	+	1	NA	NA	NA	-66	NR_002857	232919	Mm.153893	NR_002857	ENSMUSG00000108558	Psg-ps1	AV036018|Cea-6|Cea6	pregnancy specific glycoprotein pseudogene 1	pseudo	0.000000	0.462687	
mm_61198.1	chr7	63937691	63937891	+	1	NA	NA	NA	1124	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.130000	0.786070	
mm_71130.1	chr8	36549284	36549484	+	1	NA	NA	NA	60193	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding	0.050000	0.587065	
mm_40970.1	chr5	77001367	77001567	+	1	NA	NA	NA	-2588	NM_206935	384185	Mm.451858	NM_206935	ENSMUSG00000063820	Arl9	1700110A09Rik	ADP-ribosylation factor-like 9	protein-coding	0.065000	0.656716	
mm_65438.1	chr7	25388312	25388512	-	1	NA	NA	NA	1700	NM_001039507	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.030000	0.557214	
mm_100764.1	chr11	4593707	4593907	-	1	NA	NA	NA	1008	NM_028860	74302	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0.020000	0.363184	
mm_36317.1	chr4	70252057	70252257	-	1	NA	NA	NA	158278	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.005000	0.482587	
mm_72745.1	chr8	85087146	85087346	+	1	NA	NA	NA	3977	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.025000	0.502488	
mm_149225.1	chr19	10028371	10028571	+	1	NA	NA	NA	10243	NM_144538	74760	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	0.015000	0.582090	
mm_12897.1	chr2	84799332	84799532	+	1	NA	NA	NA	604	NM_019949	56791	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.025000	0.452736	
mm_86620.1	chr10	13966002	13966202	+	1	NA	NA	NA	-277	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.045000	0.681592	
mm_165557.1	chr3	14808315	14808515	-	1	NA	NA	NA	-50	NM_009799	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.005000	0.502488	16(TTGTATATAAGC,-,0.00)
mm_28572.1	chr3	93445054	93445254	-	1	NA	NA	NA	2824	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.040000	0.552239	
mm_128740.1	chr15	64312426	64312626	-	1	NA	NA	NA	147	NM_001276462	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.165000	0.761194	
mm_12434.1	chr2	70661427	70661627	+	1	NA	NA	NA	18	NM_027352	70231	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|ENSMUSG00000075299|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.145000	0.731343	
mm_151812.1	chr19	5488846	5489046	-	1	NA	NA	NA	-610	NM_027877	71711	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	0.035000	0.542289	
mm_25388.1	chr3	107218024	107218224	+	1	NA	NA	NA	3608	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.537313	
mm_85167.1	chr9	96394863	96395063	-	1	NA	NA	NA	-30664	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.015000	0.542289	
mm_58752.1	chr7	13324478	13324678	+	1	NA	NA	NA	-1089	NM_001168504	232889	Mm.223639	NM_001004762	ENSMUSG00000033847	Pla2g4c	D7Ertd445e	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding	0.005000	0.482587	-17(TCCTTTAAATGC,-,0.00)
mm_40116.1	chr5	34949370	34949570	+	1	NA	NA	NA	22	NM_173402	71729	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.130000	0.776119	
mm_69880.1	chr7	141636703	141636903	-	1	NA	NA	NA	16102	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.000000	0.527363	
mm_88777.1	chr10	80399735	80399935	+	1	NA	NA	NA	-304	NM_001306143	17192	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.060000	0.587065	
mm_54248.1	chr6	28260665	28260865	-	1	NA	NA	NA	836	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.035000	0.487562	
mm_158033.1	chrX	97377093	97377293	-	1	NA	NA	NA	16	NM_001161432	245527	Mm.189270	NM_175540	ENSMUSG00000034457	Eda2r	9430060M22Rik|TNFRSF27|Xedar	ectodysplasin A2 receptor	protein-coding	0.020000	0.452736	
mm_140462.1	chr17	91088114	91088314	+	1	NA	NA	NA	1391	NM_001346957	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.120000	0.696517	
mm_136670.1	chr17	6106763	6106963	+	1	NA	NA	NA	33	NM_001103181	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.140000	0.800995	
mm_3518.1	chr1	150107398	150107598	+	1	NA	NA	NA	7467	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.288557	
mm_155273.1	chrX	60050820	60051020	+	1	NA	NA	NA	51456	NM_001305797	14071	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	0.045000	0.487562	
mm_71734.1	chr8	62002005	62002205	+	1	NA	NA	NA	74018	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.015000	0.412935	
mm_75764.1	chr8	69974146	69974346	-	1	NA	NA	NA	137	NM_001113346	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.185000	0.830846	
mm_91046.1	chr10	18653634	18653834	-	1	NA	NA	NA	90024	NM_001033258	215821	Mm.40491	NM_001033258	ENSMUSG00000019852	Arfgef3	9630004D11|B930094H20Rik|BIG3|D10Bwg1379e|mKIAA1244	ARFGEF family member 3	protein-coding	0.000000	0.427861	
mm_159302.1	chr2	178078362	178078562	-	1	NA	NA	NA	-37	NM_001162922	353208	Mm.381194	NM_001162922	ENSMUSG00000078861	Zfp931	2810021G02Rik	zinc finger protein 931	protein-coding	0.015000	0.492537	
mm_18594.1	chr2	66730092	66730292	-	1	NA	NA	NA	54718	NM_009135	20272	Mm.38127	NM_009135	ENSMUSG00000034810	Scn7a	1110034K09Rik|AI642000|NaG|Nav2|Nav2.3|Nax|Scn6a	sodium channel, voltage-gated, type VII, alpha	protein-coding	0.010000	0.318408	
mm_115227.1	chr13	109837719	109837919	+	1	NA	NA	NA	-65990	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.020000	0.492537	
mm_148039.1	chr18	70244496	70244696	-	1	NA	NA	NA	-12	NM_029346	75577	Mm.58214	NM_029346	ENSMUSG00000024512	Dynap	2310002L13Rik	dynactin associated protein	protein-coding	0.010000	0.378109	-3(TACTTTAAAAGG,-,0.00),-2(ACTTTAAAAGGC,+,0.00)
mm_157743.1	chrX	73082323	73082523	-	1	NA	NA	NA	84	NM_001081642	434794	Mm.104764	NM_001081642	ENSMUSG00000079845	Xlr4a	-	X-linked lymphocyte-regulated 4A	protein-coding	0.035000	0.522388	
mm_113586.1	chr13	40887090	40887290	+	1	NA	NA	NA	432	NM_008105	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.030000	0.547264	
mm_106870.1	chr12	8010219	8010419	+	1	NA	NA	NA	32642	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.427861	
mm_141559.1	chr17	32214644	32214844	-	1	NA	NA	NA	-25195	NM_001347341	71932	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9	epoxide hydrolase 3	protein-coding	0.035000	0.567164	
mm_128218.1	chr15	36283028	36283228	-	1	NA	NA	NA	19	NM_013923	30945	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0.095000	0.716418	
mm_119133.1	chr14	31160662	31160862	+	1	NA	NA	NA	7879	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.020000	0.527363	
mm_75499.1	chr8	52197039	52197239	-	1	NA	NA	NA	-1314563	NM_001205054	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.070000	0.507463	
mm_75485.1	chr8	48843192	48843392	-	1	NA	NA	NA	-168602	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.140000	0.756219	
mm_66522.1	chr7	45125803	45126003	-	1	NA	NA	NA	532	NR_000003	27211		NR_000003	ENSMUSG00000065818	Snord35a	Rnu35a|U35|U35A	small nucleolar RNA, C/D box 35A	snoRNA	0.020000	0.557214	
mm_163181.1	chr11	91577408	91577608	-	1	NA	NA	NA	47	NM_028547	73470	Mm.67677	NM_028547	ENSMUSG00000046755	Kif2b	1700063D03Rik	kinesin family member 2B	protein-coding	0.025000	0.587065	
mm_71674.1	chr8	60842248	60842448	+	1	NA	NA	NA	-48103	NM_028299	72612	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.005000	0.517413	
mm_92352.1	chr10	75904354	75904554	-	1	NA	NA	NA	11056	NM_024440	70377	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	0.015000	0.547264	
mm_155585.1	chrX	78737699	78737899	+	1	NA	NA	NA	36	NM_001164739	70864	Mm.66681	NM_001164739	ENSMUSG00000078315	Fam47c	4921509A18Rik|Fam47a|Fam47a-ps	family with sequence similarity 47, member C	protein-coding	0.015000	0.517413	
mm_145507.1	chr18	60391499	60391699	+	1	NA	NA	NA	15570	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.000000	0.323383	-20(GTTTTTAAACTG,+,0.00)
mm_130973.1	chr15	103333723	103333923	-	1	NA	NA	NA	6263	NM_013866	29813	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.010000	0.577114	
mm_60120.1	chr7	36171222	36171422	+	1	NA	NA	NA	-368333	NM_177739	668501	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	0.005000	0.482587	
mm_17197.1	chr2	25468054	25468254	-	1	NA	NA	NA	1595	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.030000	0.582090	
mm_15095.1	chr2	153308530	153308730	+	1	NA	NA	NA	17214	NM_008444	16569	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0.010000	0.477612	
mm_114002.1	chr13	52585856	52586056	+	1	NA	NA	NA	2519	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.000000	0.452736	
mm_95678.1	chr11	54124318	54124518	+	1	NA	NA	NA	23494	NM_011031	18452	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.005000	0.542289	
mm_93027.1	chr10	88135683	88135883	-	1	NA	NA	NA	11158	NM_029249	75317	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	0.040000	0.537313	-15(TGCTTTAAAAAA,-,0.00)
mm_149927.1	chr19	26749758	26749958	+	1	NA	NA	NA	1455	NM_026003	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.020000	0.398010	
mm_38572.1	chr4	141814928	141815128	-	1	NA	NA	NA	10977	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.005000	0.452736	
mm_126476.1	chr15	81523272	81523472	+	1	NA	NA	NA	57056	NM_019712	56438	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.085000	0.721393	
mm_165016.1	chr19	29101050	29101250	-	1	NA	NA	NA	-225	NM_021525	59028	Mm.28630	NM_021525	ENSMUSG00000024785	Rcl1	2310040A02Rik|AI789745|C76567|RPCL1|Rnac	RNA terminal phosphate cyclase-like 1	protein-coding	0.080000	0.661692	
mm_94030.1	chr10	127884249	127884449	-	1	NA	NA	NA	4350	NM_017473	54150	Mm.6696	NM_017473	ENSMUSG00000040134	Rdh7	AI194929|CRAD2	retinol dehydrogenase 7	protein-coding	0.000000	0.502488	
mm_84014.1	chr9	57646620	57646820	-	1	NA	NA	NA	-1067	NM_007783	12988	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.015000	0.482587	
mm_40402.1	chr5	53002914	53003114	+	1	NA	NA	NA	-10722	NR_040413	75954	Mm.258937	NR_040413	ENSMUSG00000106352	5033403H07Rik	-	RIKEN cDNA 5033403H07 gene	ncRNA	0.015000	0.452736	
mm_4884.1	chr1	188054908	188055108	+	1	NA	NA	NA	-46018	NR_038007	320272	Mm.446274	NR_038007	ENSMUSG00000103577	9330162B11Rik	-	RIKEN cDNA 9330162B11 gene	ncRNA	0.010000	0.308458	
mm_81003.1	chr9	103426542	103426742	+	1	NA	NA	NA	3064	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.025000	0.597015	
mm_83327.1	chr9	44233401	44233601	-	1	NA	NA	NA	545	NM_007619	12402	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.065000	0.696517	
mm_39796.1	chr5	30595915	30596115	+	1	NA	NA	NA	-7396	NR_040427	100502829	Mm.39944	NR_040427	ENSMUSG00000053214	Gm9899	ENSMUSG00000053214	predicted gene 9899	ncRNA	0.010000	0.517413	
mm_154250.1	chr19	60766571	60766771	-	1	NA	NA	NA	7714	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.045000	0.567164	
mm_92827.1	chr10	81472764	81472964	-	1	NA	NA	NA	267	NM_001311127	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.035000	0.661692	
mm_166415.1	chr5	137151481	137151681	-	1	NA	NA	NA	-35374	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.502488	
mm_42028.1	chr5	108279415	108279615	+	1	NA	NA	NA	10618	NM_026106	13486	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0.010000	0.348259	
mm_124684.1	chr15	6435076	6435276	+	1	NA	NA	NA	-10157	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.015000	0.462687	
mm_39926.1	chr5	31596885	31597085	+	1	NA	NA	NA	-16966	NM_025796	66845	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0.040000	0.567164	
mm_158053.1	chrX	100625792	100625992	-	1	NA	NA	NA	15	NM_028303	72621	Mm.291607	NM_028303	ENSMUSG00000015668	Pdzd11	1810012H22Rik|2310079D11Rik|2700099C19Rik|AI854765|Pdzk11	PDZ domain containing 11	protein-coding	0.100000	0.646766	
mm_119286.1	chr14	34378689	34378889	+	1	NA	NA	NA	3285	NM_153127	105450	Mm.272673	NM_153127	ENSMUSG00000041445	Mmrn2	AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1	multimerin 2	protein-coding	0.005000	0.582090	
mm_28452.1	chr3	90614313	90614513	-	1	NA	NA	NA	1519	NM_011313	20200	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0.020000	0.462687	
mm_125699.1	chr15	66909164	66909364	+	1	NA	NA	NA	17871	NM_018865	22402	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0.020000	0.557214	
mm_77594.1	chr8	123892052	123892252	-	1	NA	NA	NA	2623	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.040000	0.606965	
mm_116761.1	chr13	52567994	52568194	-	1	NA	NA	NA	5131	NR_046069	100040572	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0.010000	0.527363	
mm_42936.1	chr5	122989147	122989347	+	1	NA	NA	NA	-107	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.110000	0.696517	
mm_133967.1	chr16	4213952	4214152	-	1	NA	NA	NA	-648	NM_001025432	12914	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0.110000	0.641791	
mm_6283.1	chr1	69685704	69685904	-	1	NA	NA	NA	156	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.020000	0.527363	
mm_11829.1	chr2	45075337	45075537	+	1	NA	NA	NA	34840	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.000000	0.487562	
mm_12122.1	chr2	61617082	61617282	+	1	NA	NA	NA	24085	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.000000	0.363184	4(CTTTATATAGTG,+,0.00)
mm_98933.1	chr11	98356633	98356833	+	1	NA	NA	NA	1550	NR_045477	69338	Mm.398308	NR_045477	ENSMUSG00000085944	1700003D09Rik	-	RIKEN cDNA 1700003D09 gene	ncRNA	0.015000	0.482587	
mm_147242.1	chr18	38338902	38339102	-	1	NA	NA	NA	-9	NM_011937	26384	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.105000	0.706468	
mm_71235.1	chr8	40906779	40906979	+	1	NA	NA	NA	-19354	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.005000	0.407960	
mm_64796.1	chr7	6685384	6685584	-	1	NA	NA	NA	10948	NM_011769	22776	Mm.89976	NM_011769	ENSMUSG00000002266	Zim1	-	zinc finger, imprinted 1	protein-coding	0.015000	0.432836	
mm_12673.1	chr2	75773707	75773907	+	1	NA	NA	NA	-58370	NM_172666	228061	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.010000	0.452736	
mm_69366.1	chr7	130547300	130547500	-	1	NA	NA	NA	-19	NM_001162855	67872	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0.095000	0.641791	
mm_16823.1	chr2	11473891	11474091	-	1	NA	NA	NA	28099	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.000000	0.522388	-29(GCTTTTATGCAT,+,0.00)
mm_97354.1	chr11	77493348	77493548	+	1	NA	NA	NA	36	NM_001004144	216963	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0.215000	0.910448	
mm_24853.1	chr3	95871450	95871650	+	1	NA	NA	NA	28	NR_040446	100042889	Mm.440109	NR_040446	ENSMUSG00000080727	C920021L13Rik	-	RIKEN cDNA C920021L13 gene	ncRNA	0.095000	0.636816	
mm_92760.1	chr10	81089238	81089438	-	1	NA	NA	NA	9534	NM_145365	208677	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	0.005000	0.577114	
mm_78997.1	chr9	45405988	45406188	+	1	NA	NA	NA	11	NM_007503	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.025000	0.552239	
mm_20403.1	chr2	129297111	129297311	-	1	NA	NA	NA	1	NM_181589	70466	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	0.090000	0.592040	
mm_115192.1	chr13	108775192	108775392	+	1	NA	NA	NA	121115	NM_011056	238871	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	0.000000	0.547264	
mm_116015.1	chr13	24761813	24762013	-	1	NA	NA	NA	24	NM_020567	57441	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.130000	0.681592	
mm_90889.1	chr10	10234778	10234978	-	1	NA	NA	NA	237436	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.040000	0.477612	
mm_137326.1	chr17	25016283	25016483	+	1	NA	NA	NA	297	NM_134126	106633	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	0.065000	0.611940	
mm_107890.1	chr12	70459730	70459930	+	1	NA	NA	NA	6676	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0.000000	0.452736	
mm_20497.1	chr2	130393150	130393350	-	1	NA	NA	NA	4379	NM_019696	56264	Mm.112701	NM_019696	ENSMUSG00000027408	Cpxm1	AA986902|Cpx-1|Cpx1|Cpxm	carboxypeptidase X 1 (M14 family)	protein-coding	0.005000	0.477612	
mm_125347.1	chr15	39197968	39198168	+	1	NA	NA	NA	-218	NM_001256382	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.125000	0.741294	
mm_131955.1	chr16	24486652	24486852	+	1	NA	NA	NA	38661	NM_001145952	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.005000	0.452736	
mm_75560.1	chr8	58700891	58701091	-	1	NA	NA	NA	-195	NM_001177534	100271928	Mm.484123	NM_001177534		Gm15881	OTTMUSG00000027193	predicted gene 15881	protein-coding	0.020000	0.368159	61(CACTTTAAAAAG,-,0.00),63(CTTTAAAAAGCC,+,0.00)
mm_164756.1	chr17	84117745	84117945	-	1	NA	NA	NA	39185	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.005000	0.562189	
mm_91892.1	chr10	59951637	59951837	-	1	NA	NA	NA	33	NM_029083	74747	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.080000	0.656716	
mm_102540.1	chr11	61267018	61267218	-	1	NA	NA	NA	68	NM_001331114	11671	Mm.398221	NM_007437	ENSMUSG00000010025	Aldh3a2	AI194803|Ahd-3|Ahd-3r|Ahd3|Ahd3-r|Aldh4|Aldh4-r|FALDH	aldehyde dehydrogenase family 3, subfamily A2	protein-coding	0.050000	0.611940	
mm_36890.1	chr4	107679288	107679488	-	1	NA	NA	NA	4774	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.045000	0.666667	
mm_65337.1	chr7	24978449	24978649	-	1	NA	NA	NA	-5821	NM_010261	14470	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.025000	0.577114	
mm_62970.1	chr7	119896287	119896487	+	1	NA	NA	NA	95	NM_029610	73919	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0.050000	0.611940	84(GATTATAAATGG,-,0.00)
mm_78258.1	chr9	21835541	21835741	+	1	NA	NA	NA	131	NM_001080940	624219	Mm.440264	NM_001080940	ENSMUSG00000047822	Angptl8	EG624219|Gm6484|Rifl	angiopoietin-like 8	protein-coding	0.025000	0.621891	
mm_87970.1	chr10	63457422	63457622	+	1	NA	NA	NA	11	NM_001164376	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.015000	0.497512	
mm_115878.1	chr13	21753580	21753780	-	1	NA	NA	NA	232	NM_178183	319169	Mm.370338	NM_178183	ENSMUSG00000063021	Hist1h2ak	-	histone cluster 1, H2ak	protein-coding	0.135000	0.716418	
mm_49834.1	chr6	37870868	37871068	+	1	NA	NA	NA	157	NM_145076	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.175000	0.751244	
mm_11410.1	chr2	31572573	31572773	+	1	NA	NA	NA	22	NM_001290548	320267	Mm.207261	NM_001033389	ENSMUSG00000026843	Fubp3	A330051M14Rik|AV006371|FBP3|Marta2	far upstream element (FUSE) binding protein 3	protein-coding	0.070000	0.651741	
mm_15645.1	chr2	163062345	163062545	+	1	NA	NA	NA	-5645	NR_105970	102465607		NR_105970	ENSMUSG00000099091	Mir7003	Gm27340|mmu-mir-7003	microRNA 7003	ncRNA	0.025000	0.537313	
mm_167310.1	chr8	61700226	61700426	-	1	NA	NA	NA	59772	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.000000	0.278607	
mm_63257.1	chr7	126649321	126649521	+	1	NA	NA	NA	112	NM_029339	75565	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	0.110000	0.606965	
mm_115881.1	chr13	21780524	21780724	-	1	NA	NA	NA	1	NM_020034	56702	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	0.070000	0.537313	-34(GCTTATATAAAC,+,0.00)
mm_143176.1	chr17	57247210	57247410	-	1	NA	NA	NA	160	NM_001308074	78308	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0.025000	0.552239	
mm_160563.1	chr9	54193241	54193441	-	1	NA	NA	NA	101	NM_007810	13075	Mm.5199	NM_007810	ENSMUSG00000032274	Cyp19a1	Ar|ArKO|Cyp19|Int-5|Int5|p450arom	cytochrome P450, family 19, subfamily a, polypeptide 1	protein-coding	0.015000	0.447761	
mm_44507.1	chr5	24030536	24030736	-	1	NA	NA	NA	54	NM_053090	84652	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.085000	0.696517	
mm_68715.1	chr7	119896195	119896395	-	1	NA	NA	NA	3	NM_029610	73919	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0.070000	0.656716	
mm_128172.1	chr15	34443064	34443264	-	1	NA	NA	NA	61	NM_009083	19946	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	0.050000	0.572139	
mm_124131.1	chr14	84443287	84443487	-	1	NA	NA	NA	-176	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0.080000	0.671642	-29(CTCTTTAGAGTC,+,0.00)
mm_79045.1	chr9	46228261	46228461	+	1	NA	NA	NA	-269	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.005000	0.542289	
mm_109453.1	chr12	111076409	111076609	+	1	NA	NA	NA	36711	NM_198023	217864	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0.015000	0.522388	
mm_17258.1	chr2	25945729	25945929	-	1	NA	NA	NA	37453	NM_001276360	227634	Mm.36834	NM_001115076	ENSMUSG00000026933	Camsap1	9530003A05Rik|C77823|PRO2405	calmodulin regulated spectrin-associated protein 1	protein-coding	0.000000	0.417910	
mm_45089.1	chr5	44101451	44101651	-	1	NA	NA	NA	185	NM_008935	19126	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.055000	0.651741	
mm_105375.1	chr11	103239772	103239972	-	1	NA	NA	NA	-21440	NM_177801	328019	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0.045000	0.542289	
mm_7849.1	chr1	132384678	132384878	-	1	NA	NA	NA	5540	NM_001311107	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.015000	0.477612	-67(CCCTATAAATAG,-,0.00),-35(GCTTATAAAGGC,+,0.00),-35(GCTTATAAAGGC,-,0.00)
mm_81148.1	chr9	106890096	106890296	+	1	NA	NA	NA	1742	NM_029103	74840	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	0.015000	0.482587	
mm_131401.1	chr16	14370885	14371085	+	1	NA	NA	NA	9427	NM_008576	17250	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.000000	0.402985	
mm_5542.1	chr1	38472352	38472552	-	1	NA	NA	NA	154792	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.015000	0.457711	-88(CTATATATAAGC,-,0.00)
mm_7521.1	chr1	124045944	124046144	-	1	NA	NA	NA	-485	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.075000	0.671642	
mm_54659.1	chr6	39118095	39118295	-	1	NA	NA	NA	154	NM_172893	243771	Mm.268462	NM_172893	ENSMUSG00000038507	Parp12	9930021O16|AA409132|AA536654|ARTD12|PARP-12|Zc3hdc1	poly (ADP-ribose) polymerase family, member 12	protein-coding	0.115000	0.711443	
mm_32012.1	chr4	94739403	94739603	+	1	NA	NA	NA	214	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	0.030000	0.497512	
mm_133505.1	chr16	90738130	90738330	+	1	NA	NA	NA	-94	NM_029844	77037	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.045000	0.537313	
mm_82979.1	chr9	35849885	35850085	-	1	NA	NA	NA	-105	NR_030730	100041605	Mm.99350	NR_030730	ENSMUSG00000098705	Gm3428	-	predicted gene 3428	ncRNA	0.000000	0.492537	
mm_127746.1	chr15	103462662	103462862	+	1	NA	NA	NA	8937	NM_153505	105855	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	0.025000	0.547264	
mm_42296.1	chr5	114444362	114444562	+	1	NA	NA	NA	193	NM_023556	17855	Mm.28088	NM_023556	ENSMUSG00000041939	Mvk	2310010A05Rik|AI256848|AI414037|MK	mevalonate kinase	protein-coding	0.090000	0.666667	
mm_88321.1	chr10	75564108	75564308	+	1	NA	NA	NA	-3878	NM_198860	192734	Mm.259320	NM_198860	ENSMUSG00000046807	Lrrc75b	AI646023|Fam211b	leucine rich repeat containing 75B	protein-coding	0.015000	0.502488	
mm_83932.1	chr9	56635870	56636070	-	1	NA	NA	NA	-322	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.100000	0.681592	
mm_70036.1	chr7	142577300	142577500	-	1	NA	NA	NA	-253	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.010000	0.542289	
mm_118412.1	chr14	7791331	7791531	+	1	NA	NA	NA	-26526	NM_001081427	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.075000	0.572139	-98(TCATTTAGAGCG,+,0.00)
mm_121679.1	chr14	12822903	12823103	-	1	NA	NA	NA	76	NM_001042617	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	0.090000	0.656716	
mm_142280.1	chr17	40208503	40208703	-	1	NA	NA	NA	6	NM_031190	18663	Mm.717	NM_031190	ENSMUSG00000031233	Pgk2	Pgk-2|Tcp-2	phosphoglycerate kinase 2	protein-coding	0.010000	0.457711	
mm_58764.1	chr7	15881557	15881757	+	1	NA	NA	NA	-960	NR_038092	546024	Mm.259041	NM_001033638	ENSMUSG00000074365	Crxos	AA606869|AY590891|Crxos1|Egam1	cone-rod homeobox, opposite strand	protein-coding	0.015000	0.527363	-62(GGCCAGAAAGGG,-,0.00)
mm_138330.1	chr17	34894444	34894644	+	1	NA	NA	NA	-15	NM_198886	193736	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	0.105000	0.731343	
mm_47179.1	chr5	120749728	120749928	-	1	NA	NA	NA	20	NM_145227	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.020000	0.522388	
mm_117489.1	chr13	78183090	78183290	-	1	NA	NA	NA	13259	NM_001347538	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.010000	0.467662	
mm_38607.1	chr4	141861912	141862112	-	1	NA	NA	NA	12908	NM_025994	27984	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	0.025000	0.582090	
mm_152203.1	chr19	7607072	7607272	-	1	NA	NA	NA	4	NM_019516	56072	Mm.298242	NM_019516	ENSMUSG00000024972	Lgals12	AW987437|Grip1	lectin, galactose binding, soluble 12	protein-coding	0.030000	0.606965	-28(GCCTCTTAAGGA,-,0.00)
mm_20170.1	chr2	122305611	122305811	-	1	NA	NA	NA	6811	NM_025777	66811	Mm.171333	NM_025777	ENSMUSG00000027225	Duoxa2	9030623N16Rik|Nip2	dual oxidase maturation factor 2	protein-coding	0.015000	0.512438	
mm_50599.1	chr6	49218193	49218393	+	1	NA	NA	NA	-3339	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.080000	0.582090	
mm_22802.1	chr3	25731099	25731299	+	1	NA	NA	NA	422108	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.055000	0.517413	-94(GCCTATATAGCA,+,0.00),-35(CCATTTAAACCA,+,0.00)
mm_61496.1	chr7	75752634	75752834	+	1	NA	NA	NA	-95604	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.020000	0.567164	
mm_52574.1	chr6	116338283	116338483	+	1	NA	NA	NA	361	NM_027920	71779	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	0.085000	0.666667	
mm_90560.1	chr10	128194549	128194749	+	1	NA	NA	NA	14	NM_001285779	216456	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	0.100000	0.771144	
mm_108518.1	chr12	84052030	84052230	+	1	NA	NA	NA	-14	NM_001346701	171281	Mm.202331	NM_134246	ENSMUSG00000021228	Acot3	AW108394|PTE-Ia|Pte2a	acyl-CoA thioesterase 3	protein-coding	0.010000	0.502488	
mm_156505.1	chrX	146962381	146962581	+	1	NA	NA	NA	-32	NM_008312	15560	Mm.439670	NM_008312	ENSMUSG00000041380	Htr2c	5-HT2C|5-HT2cR|5-HTR2C|5HT1c|Htr1c|SR1	5-hydroxytryptamine (serotonin) receptor 2C	protein-coding	0.010000	0.562189	
mm_58508.1	chr7	4119440	4119640	+	1	NA	NA	NA	10	NM_001001454	57776	Mm.29729	NM_021324	ENSMUSG00000030428	Ttyh1	4930459B04Rik|6330408P11Rik|TTY1|mTTY1|tty	tweety family member 1	protein-coding	0.110000	0.771144	
mm_31668.1	chr4	60004681	60004881	+	1	NA	NA	NA	1232	NM_001081285	620807	Mm.464562	NM_001081285	ENSMUSG00000078689	Mup6	Gm12544|Mup2|OTTMUSG00000007423	major urinary protein 6	protein-coding	0.010000	0.368159	
mm_113415.1	chr13	34021358	34021558	+	1	NA	NA	NA	-16183	NM_026512	68021	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0.005000	0.358209	
mm_55035.1	chr6	48987331	48987531	-	1	NA	NA	NA	570	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.030000	0.552239	
mm_155624.1	chrX	83593794	83593994	+	1	NA	NA	NA	-105970	NM_021898	100502723	Mm.383210	NM_021898	ENSMUSG00000035522	Tsga8	Halap-X|Halapx	testis specific gene A8	protein-coding	0.005000	0.417910	
mm_121926.1	chr14	23641624	23641824	-	1	NA	NA	NA	362481	NM_001253375	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.005000	0.472637	
mm_52618.1	chr6	117173887	117174087	+	1	NA	NA	NA	5452	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.025000	0.532338	
mm_156343.1	chrX	139010032	139010232	+	1	NA	NA	NA	75104	NM_177920	331535	Mm.211704	NM_177920	ENSMUSG00000031271	Serpina7	C730040N12Rik|Tbg	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7	protein-coding	0.005000	0.507463	
mm_95826.1	chr11	55406452	55406652	+	1	NA	NA	NA	13528	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.025000	0.562189	
mm_80513.1	chr9	79793549	79793749	+	1	NA	NA	NA	8	NR_040734	74633	Mm.262175	NR_040734	ENSMUSG00000086918	4930429F24Rik	-	RIKEN cDNA 4930429F24 gene	ncRNA	0.115000	0.616915	
mm_27357.1	chr3	50417886	50418086	-	1	NA	NA	NA	25627	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.288557	
mm_12934.1	chr2	85060849	85061049	+	1	NA	NA	NA	10489	NM_001081260	228140	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	0.030000	0.661692	
mm_61170.1	chr7	59276819	59277019	+	1	NA	NA	NA	47230	NR_015479	330544	Mm.9002	NR_015479	ENSMUSG00000100826	C230091D08Rik	-	RIKEN cDNA C230091D08 gene	ncRNA	0.020000	0.378109	-81(CCCTTTATATTG,+,0.00)
mm_40312.1	chr5	43856036	43856236	+	1	NA	NA	NA	-12673	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.000000	0.502488	
mm_4914.1	chr1	190596445	190596645	+	1	NA	NA	NA	315225	NM_178775	320119	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.000000	0.373134	
mm_81386.1	chr9	108953503	108953703	+	1	NA	NA	NA	-142	NM_007738	12836	Mm.6200	NM_007738	ENSMUSG00000025650	Col7a1	AW209154	collagen, type VII, alpha 1	protein-coding	0.065000	0.681592	
mm_171832.1	chr5	146661931	146662131	+	1	NA	NA	NA	-76792	NM_001010941	14738	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	0.015000	0.487562	
mm_9980.1	chr1	191230310	191230510	-	1	NA	NA	NA	-47077	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.010000	0.512438	
mm_588.1	chr1	39493252	39493452	+	1	NA	NA	NA	-14605	NM_018775	54610	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.015000	0.447761	
mm_140459.1	chr17	90047982	90048182	+	1	NA	NA	NA	40286	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.010000	0.422886	
mm_73683.1	chr8	111550249	111550449	+	1	NA	NA	NA	12006	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.010000	0.378109	
mm_76109.1	chr8	80395139	80395339	-	1	NA	NA	NA	-98806	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.015000	0.398010	
mm_95245.1	chr11	44617777	44617977	+	1	NA	NA	NA	-223	NM_001290711	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.010000	0.303483	
mm_11157.1	chr2	28544985	28545185	+	1	NA	NA	NA	11621	NM_001145836	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.045000	0.587065	
mm_145271.1	chr18	52768262	52768462	+	1	NA	NA	NA	218	NM_001199154	67847	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0.185000	0.820896	
mm_46361.1	chr5	103309621	103309821	-	1	NA	NA	NA	-10692	NR_040699	74624	Mm.389662	NR_040699	ENSMUSG00000104956	4930429D17Rik	-	RIKEN cDNA 4930429D17 gene	ncRNA	0.005000	0.477612	-14(TCTTATAAAGCA,+,0.00)
mm_50687.1	chr6	51584434	51584634	+	1	NA	NA	NA	40011	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.020000	0.472637	
mm_109885.1	chr12	5334539	5334739	-	1	NA	NA	NA	41043	NM_001164493	208439	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.000000	0.447761	
mm_42626.1	chr5	118245313	118245513	+	1	NA	NA	NA	186	NM_001081236	76792	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0.085000	0.636816	
mm_161947.1	chr19	4398206	4398406	-	1	NA	NA	NA	-1229	NM_001001984	225876	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0.110000	0.781095	
mm_14895.1	chr2	149405224	149405424	+	1	NA	NA	NA	75	NM_021405	58214	Mm.117117	NM_021405	ENSMUSG00000033156	Cst10	DD72	cystatin 10 (chondrocytes)	protein-coding	0.005000	0.532338	
mm_82780.1	chr9	27186908	27187108	-	1	NA	NA	NA	-31587	NM_023277	83964	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	0.005000	0.542289	-36(CACTATAAAAGG,-,0.00)
mm_99269.1	chr11	101246871	101247071	+	1	NA	NA	NA	637	NM_019444	54409	Mm.260698	NM_019444	ENSMUSG00000001240	Ramp2	-	receptor (calcitonin) activity modifying protein 2	protein-coding	0.015000	0.517413	
mm_146288.1	chr18	78476778	78476978	+	1	NA	NA	NA	120072	NM_207651	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.005000	0.388060	
mm_2353.1	chr1	92911954	92912154	+	1	NA	NA	NA	1229	NM_181405	108657	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	0.015000	0.557214	
mm_95729.1	chr11	54626293	54626493	+	1	NA	NA	NA	30247	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.005000	0.358209	-7(CCTTTTAGAGCA,+,0.00)
mm_120115.1	chr14	59491156	59491356	+	1	NA	NA	NA	50275	NM_026908	69008	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding	0.000000	0.462687	
mm_313.1	chr1	24230719	24230919	+	1	NA	NA	NA	35616	NM_001290691	12839	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding	0.025000	0.552239	
mm_145747.1	chr18	64386497	64386697	+	1	NA	NA	NA	46233	NM_194268	225631	Mm.234723	NM_194268	ENSMUSG00000045991	Onecut2	C730009D12|OC-2|Oc2	one cut domain, family member 2	protein-coding	0.015000	0.512438	
mm_150083.1	chr19	29387347	29387547	+	1	NA	NA	NA	20009	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.015000	0.502488	
mm_7694.1	chr1	128766793	128766993	-	1	NA	NA	NA	-174594	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.025000	0.482587	
mm_70150.1	chr7	143460151	143460351	-	1	NA	NA	NA	799	NM_009876	12577	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.125000	0.751244	
mm_96205.1	chr11	62248894	62249094	+	1	NA	NA	NA	10	NM_007413	11541	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0.100000	0.746269	
mm_30779.1	chr4	19280815	19281015	+	1	NA	NA	NA	65	NM_013927	30952	Mm.445778	NM_013927	ENSMUSG00000056494	Cngb3	CCNC2|CNG6|Cngbeta2	cyclic nucleotide gated channel beta 3	protein-coding	0.015000	0.412935	
mm_145684.1	chr18	61632861	61633061	+	1	NA	NA	NA	-6692	NR_045420	545261	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0.015000	0.547264	
mm_105366.1	chr11	103199391	103199591	-	1	NA	NA	NA	9057	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.070000	0.711443	
mm_147926.1	chr18	65938968	65939168	-	1	NA	NA	NA	21	NM_013833	19434	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	0.050000	0.641791	-97(CCCTCTATAGGG,-,0.00)
mm_47568.1	chr5	124478177	124478377	-	1	NA	NA	NA	-42	NM_030259	80291	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.080000	0.646766	
mm_1318.1	chr1	65100296	65100496	+	1	NA	NA	NA	2967	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.010000	0.422886	25(GCATATATGGGC,+,0.00)
mm_117937.1	chr13	99434466	99434666	-	1	NA	NA	NA	-21740	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.527363	
mm_160593.1	chr9	71162766	71162966	-	1	NA	NA	NA	-233	NM_001271843	64008	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.035000	0.477612	
mm_141861.1	chr17	34804022	34804222	-	1	NA	NA	NA	304	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.010000	0.512438	
mm_138360.1	chr17	34982061	34982261	+	1	NA	NA	NA	31	NM_030597	27756	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.125000	0.711443	
mm_144031.1	chr17	90037120	90037320	-	1	NA	NA	NA	51148	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.035000	0.547264	
mm_161598.1	chr16	36561844	36562044	-	1	NA	NA	NA	190	NM_013803	12374	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.035000	0.601990	
mm_45154.1	chr5	49341389	49341589	-	1	NA	NA	NA	-55830	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.005000	0.208955	
mm_120861.1	chr14	75229327	75229527	+	1	NA	NA	NA	-12860	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.010000	0.457711	
mm_29979.1	chr3	133791419	133791619	-	1	NA	NA	NA	-247129	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.000000	0.383085	
mm_88208.1	chr10	70191095	70191295	+	1	NA	NA	NA	-13469	NM_001304739	69563	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Mln	myoregulin	protein-coding	0.015000	0.398010	
mm_6250.1	chr1	68780734	68780934	-	1	NA	NA	NA	327225	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	0.005000	0.393035	
mm_161806.1	chr17	57769259	57769459	+	1	NA	NA	NA	-211	NM_001081653	620292	Mm.391030	NM_001081653	ENSMUSG00000038048	Cntnap5c	Caspr5-3|EG620292|Gm325	contactin associated protein-like 5C	protein-coding	0.050000	0.532338	-66(TACCCTTAAAGG,-,0.00)
mm_103816.1	chr11	83003438	83003638	-	1	NA	NA	NA	-11708	NM_172796	237886	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.010000	0.407960	
mm_26350.1	chr3	142548118	142548318	+	1	NA	NA	NA	-11834	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.015000	0.437811	
mm_64870.1	chr7	14122974	14123174	-	1	NA	NA	NA	-81	NM_001101586	629203	Mm.482066	NM_001101586	ENSMUSG00000074375	Sult2a3	EG629203|Gm6955	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 3	protein-coding	0.005000	0.328358	
mm_56536.1	chr6	99666674	99666874	-	1	NA	NA	NA	-3	NM_025829	66892	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.140000	0.791045	
mm_145433.1	chr18	58836230	58836430	+	1	NA	NA	NA	-33	NM_175506	240322	Mm.71963	NM_175506	ENSMUSG00000053441	Adamts19	4831407I23Rik|AU015154|D230034E10Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	protein-coding	0.110000	0.711443	
mm_129595.1	chr15	79804625	79804825	-	1	NA	NA	NA	-16	NM_030689	73340	Mm.38438	NM_030689	ENSMUSG00000022421	Nptxr	1200009K17Rik|1700036C17Rik|5730406O18Rik|AI452369|AI785356|D15Bwg0580e|NPR|Npcd	neuronal pentraxin receptor	protein-coding	0.165000	0.825871	
mm_52395.1	chr6	113306864	113307064	+	1	NA	NA	NA	-173	NM_030178	78783	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.080000	0.646766	
mm_17874.1	chr2	34958008	34958208	-	1	NA	NA	NA	3664	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.010000	0.562189	
mm_135618.1	chr16	52271424	52271624	-	1	NA	NA	NA	181557	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.328358	
mm_62842.1	chr7	114181291	114181491	+	1	NA	NA	NA	-63610	NM_025846	66922	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.005000	0.417910	-28(GCTTTTAAGTGG,+,0.00)
mm_160289.1	chr7	127051911	127052111	-	1	NA	NA	NA	-34	NM_026918	69036	Mm.21835	NM_026918	ENSMUSG00000049350	Zg16	1810010M01Rik|AI593689|ZG16p	zymogen granule protein 16	protein-coding	0.030000	0.497512	
mm_11109.1	chr2	28192973	28193173	+	1	NA	NA	NA	-20	NM_001038613	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.145000	0.791045	
mm_172408.1	chr7	17026850	17027050	-	1	NA	NA	NA	964	NM_011155	19060	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	0.030000	0.472637	47(GGCTTTTTGAGG,-,0.00)
mm_9125.1	chr1	170540716	170540916	-	1	NA	NA	NA	16294	NM_027528	70729	Mm.487078	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.000000	0.278607	
mm_38995.1	chr4	151139449	151139649	-	1	NA	NA	NA	49979	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	0.030000	0.631841	
mm_170774.1	chr2	164769950	164770150	+	1	NA	NA	NA	121	NM_026785	68612	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	0.080000	0.661692	
mm_96136.1	chr11	60931055	60931255	+	1	NA	NA	NA	712	NR_027800	24082	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	0.030000	0.547264	
mm_163871.1	chr14	19419067	19419267	-	1	NA	NA	NA	183420	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.358209	
mm_110907.1	chr12	75818103	75818303	-	1	NA	NA	NA	-115	NM_001005510	319565	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0.120000	0.721393	
mm_163509.1	chr12	113145368	113145568	+	1	NA	NA	NA	4863	NM_001347443	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.015000	0.522388	
mm_105411.1	chr11	103627563	103627763	-	1	NA	NA	NA	11211	NM_027083	69444	Mm.275677	NM_027083	ENSMUSG00000020945	Lyzl6	1700023H08Rik|Lyc1|Lyzb	lysozyme-like 6	protein-coding	0.075000	0.611940	
mm_50930.1	chr6	57663165	57663365	+	1	NA	NA	NA	28813	NM_025574	66459	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	0.005000	0.437811	
mm_55814.1	chr6	83033304	83033504	-	1	NA	NA	NA	67	NM_010070	13448	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.070000	0.651741	
mm_14889.1	chr2	148875140	148875340	+	1	NA	NA	NA	272	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.095000	0.641791	
mm_39494.1	chr5	20951876	20952076	+	1	NA	NA	NA	-154	NM_001080977	242860	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0.110000	0.626866	
mm_116564.1	chr13	46930112	46930312	-	1	NA	NA	NA	-494	NM_010617	16553	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	0.070000	0.696517	
mm_26658.1	chr3	154597132	154597332	+	1	NA	NA	NA	-134	NM_172474	209584	Mm.347513	NM_172474	ENSMUSG00000047583	Tyw3	5230400J09Rik	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	protein-coding	0.050000	0.582090	
mm_100208.1	chr11	116853163	116853363	+	1	NA	NA	NA	-169	NM_011358	20382	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0.145000	0.711443	
mm_91432.1	chr10	33256253	33256453	-	1	NA	NA	NA	4	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.005000	0.412935	
mm_165625.1	chr3	65390884	65391084	-	1	NA	NA	NA	1569	NM_026155	67437	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.010000	0.278607	
mm_161301.1	chr14	30715060	30715260	+	1	NA	NA	NA	-7	NM_001166531	54650	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.090000	0.656716	
mm_68510.1	chr7	111122589	111122789	-	1	NA	NA	NA	-14	NR_015573	75479	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0.090000	0.631841	
mm_120855.1	chr14	75226887	75227087	+	1	NA	NA	NA	-15300	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.010000	0.447761	
mm_123502.1	chr14	66232163	66232363	-	1	NA	NA	NA	-18711	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.005000	0.482587	
mm_17615.1	chr2	30929801	30930001	-	1	NA	NA	NA	-23100	NM_133673	30934	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.055000	0.616915	
mm_118294.1	chr13	113071068	113071268	-	1	NA	NA	NA	-24780	NM_027127	69590	Mm.12715	NM_027127	ENSMUSG00000021760	Gpx8	2310016C16Rik|AU017063	glutathione peroxidase 8 (putative)	protein-coding	0.000000	0.412935	
mm_81995.1	chr9	121586900	121587100	+	1	NA	NA	NA	-20	NR_040740	75384	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	0.025000	0.512438	
mm_117922.1	chr13	99433502	99433702	-	1	NA	NA	NA	-20776	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.035000	0.547264	
mm_27803.1	chr3	75956322	75956522	-	1	NA	NA	NA	527	NM_175193	73124	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.125000	0.701493	
mm_113385.1	chr13	33027440	33027640	+	1	NA	NA	NA	126	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	0.000000	0.507463	
mm_32811.1	chr4	117126709	117126909	+	1	NA	NA	NA	-4	NM_175030	242646	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	0.015000	0.601990	
mm_121231.1	chr14	103055700	103055900	+	1	NA	NA	NA	8788	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.005000	0.452736	
mm_95906.1	chr11	58204979	58205179	+	1	NA	NA	NA	5523	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.005000	0.452736	
mm_143557.1	chr17	74173810	74174010	-	1	NA	NA	NA	120953	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.000000	0.467662	
mm_52835.1	chr6	121636128	121636328	+	1	NA	NA	NA	55	NM_175628	232345	Mm.30151	NM_175628	ENSMUSG00000030111	A2m	A2mp	alpha-2-macroglobulin	protein-coding	0.030000	0.587065	
mm_35344.1	chr4	32241148	32241348	-	1	NA	NA	NA	-176187	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.020000	0.492537	
mm_118148.1	chr13	105054801	105055001	-	1	NA	NA	NA	29	NM_029879	52882	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.050000	0.502488	
mm_132035.1	chr16	27417083	27417283	+	1	NA	NA	NA	28227	NM_001289436	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.020000	0.427861	
mm_79113.1	chr9	46270220	46270420	+	1	NA	NA	NA	1712	NM_080434	66113	Mm.29738	NM_080434	ENSMUSG00000032079	Apoa5	1300007O05Rik|Apoav|RAP3	apolipoprotein A-V	protein-coding	0.085000	0.641791	
mm_61543.1	chr7	79307919	79308119	+	1	NA	NA	NA	34753	NM_018811	54608	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.005000	0.343284	68(TTCTCTATAAAG,-,0.00)
mm_37823.1	chr4	131920921	131921121	-	1	NA	NA	NA	-750	NM_001201367	623230	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.075000	0.676617	
mm_136806.1	chr17	12382023	12382223	+	1	NA	NA	NA	3514	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.020000	0.497512	
mm_48125.1	chr5	137149543	137149743	-	1	NA	NA	NA	-33436	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.487562	
mm_33762.1	chr4	134343913	134344113	+	1	NA	NA	NA	547	NM_001346578	230810	Mm.358876	NM_001039677	ENSMUSG00000028836	Slc30a2	ZnT-2|Znt2	solute carrier family 30 (zinc transporter), member 2	protein-coding	0.030000	0.597015	
mm_38147.1	chr4	134896235	134896435	-	1	NA	NA	NA	18581	NM_027935	71817	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0.035000	0.582090	
mm_104810.1	chr11	98939517	98939717	-	1	NA	NA	NA	-94	NM_001177303	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.010000	0.601990	
mm_26585.1	chr3	150588717	150588917	+	1	NA	NA	NA	-849065	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.000000	0.333333	
mm_141925.1	chr17	35027541	35027741	-	1	NA	NA	NA	375	NR_028258	78376	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	0.005000	0.482587	-19(GCCCTTTAGAGG,-,0.00),-18(CCCTTTAGAGGA,+,0.00)
mm_113092.1	chr13	24104269	24104469	+	1	NA	NA	NA	-113155	NM_145399	214189	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.010000	0.383085	-33(ATCTTTATAAGC,-,0.00)
mm_6256.1	chr1	69096906	69097106	-	1	NA	NA	NA	11053	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	0.010000	0.288557	
mm_158687.1	chrX	160751169	160751369	-	1	NA	NA	NA	-16744	NM_011302	20147	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	0.000000	0.422886	
mm_125127.1	chr15	30172999	30173199	+	1	NA	NA	NA	506	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.120000	0.691542	
mm_163660.1	chr13	75690011	75690211	+	1	NA	NA	NA	-17373	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.005000	0.417910	
mm_33782.1	chr4	134873545	134873745	+	1	NA	NA	NA	9109	NM_011270	19746	Mm.195461	NM_011270	ENSMUSG00000028825	Rhd	Rh|Rhced|Rhl1	Rh blood group, D antigen	protein-coding	0.015000	0.388060	-7(TTTTTTATGGTG,+,0.00)
mm_38338.1	chr4	137742330	137742530	-	1	NA	NA	NA	17969	NR_138592	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.025000	0.666667	
mm_45305.1	chr5	65422790	65422990	-	1	NA	NA	NA	12952	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.030000	0.512438	
mm_4377.1	chr1	172147976	172148176	+	1	NA	NA	NA	61	NM_153555	98193	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	0.120000	0.721393	
mm_110737.1	chr12	69790598	69790798	-	1	NA	NA	NA	9	NM_183294	71091	Mm.132325	NM_183294	ENSMUSG00000020990	Cdkl1	4933411O17Rik	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding	0.075000	0.726368	
mm_145328.1	chr18	55539660	55539860	+	1	NA	NA	NA	-549580	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.015000	0.427861	
mm_124372.1	chr14	105897655	105897855	-	1	NA	NA	NA	-936	NM_011897	24064	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty homolog 2 (Drosophila)	protein-coding	0.085000	0.621891	
mm_71872.1	chr8	69209001	69209201	+	1	NA	NA	NA	55	NM_001013379	234358	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	0.070000	0.611940	
mm_4123.1	chr1	169693737	169693937	+	1	NA	NA	NA	38336	NM_009063	19737	Mm.20954	NM_009063	ENSMUSG00000026678	Rgs5	1110070A02Rik	regulator of G-protein signaling 5	protein-coding	0.005000	0.497512	
mm_35191.1	chr4	16013746	16013946	-	1	NA	NA	NA	31	NM_145950	209212	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.175000	0.810945	
mm_155089.1	chrX	48138077	48138277	+	1	NA	NA	NA	-8259	NM_001313749	74131	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	0.015000	0.547264	
mm_78119.1	chr9	20643308	20643508	+	1	NA	NA	NA	90	NM_025401	66177	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.035000	0.542289	
mm_47886.1	chr5	134703330	134703530	-	1	NA	NA	NA	-14840	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.000000	0.597015	
mm_38442.1	chr4	139868552	139868752	-	1	NA	NA	NA	-35684	NM_011039	18509	Mm.218760	NM_011039	ENSMUSG00000028736	Pax7	Pax-7	paired box 7	protein-coding	0.030000	0.552239	
mm_40942.1	chr5	76809887	76810087	+	1	NA	NA	NA	-30612	NM_001163793	320827	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.025000	0.497512	
mm_148280.1	chr18	82477013	82477213	-	1	NA	NA	NA	1990	NM_001025245	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.015000	0.358209	
mm_152887.1	chr19	24678665	24678865	-	1	NA	NA	NA	4757	NM_183160	226040	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	0.010000	0.477612	
mm_66899.1	chr7	59961907	59962107	-	1	NA	NA	NA	12424	NR_015456	52480	Mm.482346	NR_015456	ENSMUSG00000100826	Snhg14	AU018661|D7Ertd715e|Lncat	small nucleolar RNA host gene 14	ncRNA	0.000000	0.293532	
mm_40613.1	chr5	64797847	64798047	+	1	NA	NA	NA	-5576	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.015000	0.522388	-34(GCTTTAAGACCC,+,0.00)
mm_164409.1	chr16	36367645	36367845	-	1	NA	NA	NA	-175	NM_001082546	100034684	Mm.383561	NM_001082546	ENSMUSG00000071561	BC100530	-	cDNA sequence BC100530	protein-coding	0.010000	0.502488	
mm_49020.1	chr6	4759373	4759573	+	1	NA	NA	NA	12167	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.025000	0.487562	
mm_116398.1	chr13	41220304	41220504	-	1	NA	NA	NA	-1	NM_019423	54326	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0.190000	0.820896	
mm_13331.1	chr2	102785718	102785918	+	1	NA	NA	NA	79380	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.015000	0.447761	
mm_94036.1	chr10	128007509	128007709	-	1	NA	NA	NA	-101	NM_013786	27400	Mm.26719	NM_013786	ENSMUSG00000025396	Hsd17b6	17betaHSD9|Hsd17b9|Rdh8	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding	0.000000	0.482587	
mm_65775.1	chr7	28766108	28766308	-	1	NA	NA	NA	436	NM_001306222	18036	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	0.045000	0.527363	
mm_139211.1	chr17	47728662	47728862	+	1	NA	NA	NA	1920	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.015000	0.512438	
mm_72966.1	chr8	92840345	92840545	+	1	NA	NA	NA	13148	NM_008610	17390	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	0.025000	0.557214	
mm_48847.1	chr5	149618696	149618896	-	1	NA	NA	NA	17519	NM_013559	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.025000	0.512438	
mm_153159.1	chr19	34492626	34492826	-	1	NA	NA	NA	-17591	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.025000	0.432836	
mm_107649.1	chr12	52529344	52529544	+	1	NA	NA	NA	13367	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0.005000	0.398010	
mm_164602.1	chr17	29327005	29327205	+	1	NA	NA	NA	8223	NM_023734	74116	Mm.30950	NM_023734	ENSMUSG00000024011	Pi16	1200009H11Rik|Cripi|PI-16	peptidase inhibitor 16	protein-coding	0.015000	0.542289	
mm_161994.1	chr19	36057365	36057565	-	1	NA	NA	NA	-105	NM_008315	15566	Mm.254266	NM_008315	ENSMUSG00000024798	Htr7	5-HT7	5-hydroxytryptamine (serotonin) receptor 7	protein-coding	0.165000	0.825871	
mm_83856.1	chr9	54642611	54642811	-	1	NA	NA	NA	19174	NM_053178	94180	Mm.20592	NM_053178	ENSMUSG00000032281	Acsbg1	BG1|Bgm|E230019G03Rik|GR-LACS|Lpd|R75185	acyl-CoA synthetase bubblegum family member 1	protein-coding	0.020000	0.532338	77(CTCCAGAAAAGG,-,0.00)
mm_19960.1	chr2	117418624	117418824	-	1	NA	NA	NA	-75847	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.005000	0.477612	
mm_143017.1	chr17	56476390	56476590	-	1	NA	NA	NA	-10	NM_011218	19280	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.120000	0.741294	
mm_168641.1	chr11	85072346	85072546	+	1	NA	NA	NA	67509	NM_001029934	237898	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0.020000	0.527363	
mm_107860.1	chr12	69724896	69725096	+	1	NA	NA	NA	34	NM_026536	68055	Mm.27844	NM_026536	ENSMUSG00000054894	Atp5s	1110015E18Rik|ATPW	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit S	protein-coding	0.110000	0.676617	
mm_99669.1	chr11	105967847	105968047	+	1	NA	NA	NA	2	NM_207624	11421	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0.135000	0.731343	
mm_2011.1	chr1	87127595	87127795	+	1	NA	NA	NA	2687	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.075000	0.656716	
mm_75999.1	chr8	72474998	72475198	-	1	NA	NA	NA	135	NM_138585	27967	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	0.120000	0.691542	
mm_131417.1	chr16	14705745	14705945	+	1	NA	NA	NA	-14	NM_011415	20583	Mm.4272	NM_011415	ENSMUSG00000022676	Snai2	Slug|Slugh|Snail2	snail family zinc finger 2	protein-coding	0.065000	0.611940	
mm_53309.1	chr6	129181758	129181958	+	1	NA	NA	NA	1243	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.000000	0.417910	-97(CTTTTTAAAATC,+,0.00)
mm_108927.1	chr12	100992872	100993072	+	1	NA	NA	NA	28796	NR_035421	100316805		NR_035421	ENSMUSG00000080575	Mir1190	Mirn1190|mmu-mir-1190	microRNA 1190	ncRNA	0.010000	0.517413	27(CCTCTTATAAGC,+,0.00),88(GGCTCTAAGAGG,-,0.00)
mm_77790.1	chr9	3026653	3026853	+	1	NA	NA	NA	11990	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.318408	
mm_84590.1	chr9	70036608	70036808	-	1	NA	NA	NA	1380	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.015000	0.487562	
mm_41950.1	chr5	105741494	105741694	+	1	NA	NA	NA	40784	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.000000	0.363184	
mm_151593.1	chr19	3389116	3389316	-	1	NA	NA	NA	-162	NM_001286557	17771	Mm.209941	NM_010841	ENSMUSG00000024905	Mtl5	tesmin	metallothionein-like 5, testis-specific (tesmin)	protein-coding	0.150000	0.746269	
mm_7568.1	chr1	124791468	124791668	-	1	NA	NA	NA	644159	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.005000	0.417910	
mm_147629.1	chr18	58210314	58210514	-	1	NA	NA	NA	-488	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.145000	0.805970	-67(CCTCTAAAACCC,+,0.00)
mm_122019.1	chr14	27429224	27429424	-	1	NA	NA	NA	477	NM_001114879	218850	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0.080000	0.646766	-23(CCGCCTAAAAGG,-,0.00),-21(GCCTAAAAGGCC,+,0.00)
mm_98825.1	chr11	97362330	97362530	+	1	NA	NA	NA	-121	NM_138657	192157	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.140000	0.810945	
mm_13226.1	chr2	97467593	97467793	+	1	NA	NA	NA	36	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.020000	0.388060	
mm_83648.1	chr9	49505399	49505599	-	1	NA	NA	NA	-12789	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.020000	0.477612	
mm_25549.1	chr3	115888146	115888346	+	1	NA	NA	NA	63	NM_027193	69740	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	0.055000	0.487562	
mm_59681.1	chr7	28436267	28436467	+	1	NA	NA	NA	-176	NM_175021	233033	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0.135000	0.736318	
mm_21534.1	chr2	163690503	163690703	-	1	NA	NA	NA	-3434	NM_011106	18769	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.010000	0.601990	
mm_109829.1	chr12	3960361	3960561	-	1	NA	NA	NA	5516	NM_001278583	18976	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	0.045000	0.552239	
mm_87484.1	chr10	51493884	51494084	+	1	NA	NA	NA	3086	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.383085	
mm_64174.1	chr7	141456949	141457149	+	1	NA	NA	NA	1861	NM_001163689	66853	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0.015000	0.562189	
mm_167948.1	chrX	138920238	138920438	+	1	NA	NA	NA	5908	NM_013724	27206	Mm.482319	NM_013724	ENSMUSG00000052854	Nrk	AA407323|AA409510|AI225895|AV168563|AW538185|Nesk	Nik related kinase	protein-coding	0.020000	0.343284	
mm_165331.1	chr2	114013610	114013810	+	1	NA	NA	NA	-91	NM_010290	14617	Mm.389394	NM_010290	ENSMUSG00000068615	Gjd2	Gja9|connexin36|cx36	gap junction protein, delta 2	protein-coding	0.155000	0.761194	
mm_75605.1	chr8	61869555	61869755	-	1	NA	NA	NA	33035	NM_001081390	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.000000	0.248756	-72(GTTTTTATGGGT,+,0.00)
mm_38004.1	chr4	133720773	133720973	-	1	NA	NA	NA	-3765	NR_106086	102465707		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	0.020000	0.592040	
mm_104875.1	chr11	99428795	99428995	-	1	NA	NA	NA	-6636	NM_010661	268482	Mm.436651	NM_010661	ENSMUSG00000020912	Krt12	AI835216|K12|Krt-12|Krt1-12	keratin 12	protein-coding	0.010000	0.487562	
mm_105558.1	chr11	106487757	106487957	-	1	NA	NA	NA	-61	NM_023913	78943	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.095000	0.681592	
mm_100954.1	chr11	6625691	6625891	-	1	NA	NA	NA	276	NM_001130457	21379	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	0.100000	0.626866	
mm_83316.1	chr9	44134423	44134623	-	1	NA	NA	NA	-135	NM_023061	84004	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.095000	0.741294	
mm_129221.1	chr15	76576711	76576911	-	1	NA	NA	NA	452	NR_073123	268822	Mm.181624	NM_172960	ENSMUSG00000022550	Adck5	A230108P17	aarF domain containing kinase 5	protein-coding	0.020000	0.592040	
mm_128249.1	chr15	36609494	36609694	-	1	NA	NA	NA	-621	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.135000	0.731343	
mm_44330.1	chr5	14723573	14723773	-	1	NA	NA	NA	191216	NM_198666	381714	Mm.368256	NM_198666	ENSMUSG00000033219	Gm9758	ENSMUSG00000033219	predicted gene 9758	protein-coding	0.005000	0.452736	
mm_27053.1	chr3	27258623	27258823	-	1	NA	NA	NA	-58354	NM_009425	22035	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.030000	0.597015	
mm_85755.1	chr9	108649199	108649399	-	1	NA	NA	NA	81	NM_011790	23807	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.130000	0.736318	
mm_475.1	chr1	36492623	36492823	+	1	NA	NA	NA	-19144	NM_001331209	94218	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	0.020000	0.557214	-83(CTATTAATAGCC,+,0.00)
mm_13436.1	chr2	105126411	105126611	+	1	NA	NA	NA	-1	NR_015462	329480	Mm.246679	NR_015462	ENSMUSG00000074987	Wt1os	6030498F17|AI314831|Wt1-as	Wilms tumor 1 homolog, opposite strand	ncRNA	0.070000	0.661692	
mm_115639.1	chr13	12258060	12258260	-	1	NA	NA	NA	-47	NM_001081128	238505	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.100000	0.646766	
mm_106300.1	chr11	118248439	118248639	-	1	NA	NA	NA	53	NM_001112699	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.140000	0.771144	
mm_48232.1	chr5	137706950	137707150	-	1	NA	NA	NA	-22297	NM_001303266	231801	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	0.030000	0.582090	
mm_661.1	chr1	40439678	40439878	+	1	NA	NA	NA	149	NM_010743	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.030000	0.447761	-35(GTATTTAAAAAG,-,0.00)
mm_49945.1	chr6	39876766	39876966	+	1	NA	NA	NA	-65930	NM_001010930	14548	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.005000	0.298507	
mm_41513.1	chr5	92386787	92386987	+	1	NA	NA	NA	-1247	NM_181728	109979	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0.020000	0.492537	-33(TGTTATAAAAAG,-,0.00)
mm_11177.1	chr2	28700071	28700271	+	1	NA	NA	NA	10	NM_001033874	68870	Mm.273318	NM_001033874	ENSMUSG00000026807	Ak8	1190002A17Rik|AK 8	adenylate kinase 8	protein-coding	0.080000	0.587065	
mm_42492.1	chr5	115474480	115474680	+	1	NA	NA	NA	8314	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.045000	0.502488	
mm_70525.1	chr8	12984188	12984388	+	1	NA	NA	NA	34870	NM_001159485	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.020000	0.572139	
mm_100725.1	chr11	3923421	3923621	-	1	NA	NA	NA	8440	NM_001130459	21452	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	0.010000	0.552239	
mm_137154.1	chr17	23681703	23681903	+	1	NA	NA	NA	2223	NM_020293	56863	Mm.491368	NM_020293	ENSMUSG00000066720	Cldn9	nmf329	claudin 9	protein-coding	0.010000	0.507463	
mm_101471.1	chr11	30649362	30649562	-	1	NA	NA	NA	-66	NM_029344	75572	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	0.080000	0.636816	
mm_127471.1	chr15	101272933	101273133	+	1	NA	NA	NA	6187	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.025000	0.616915	
mm_114383.1	chr13	63240939	63241139	+	1	NA	NA	NA	1010	NR_110521	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.020000	0.497512	
mm_74189.1	chr8	123653729	123653929	+	1	NA	NA	NA	-100	NM_133955	69581	Mm.168257	NM_133955	ENSMUSG00000039960	Rhou	2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K	ras homolog family member U	protein-coding	0.150000	0.741294	
mm_110624.1	chr12	57197079	57197279	-	1	NA	NA	NA	293	NM_172577	217593	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0.065000	0.621891	
mm_3837.1	chr1	160044313	160044513	+	1	NA	NA	NA	33	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.065000	0.636816	
mm_144927.1	chr18	37694315	37694515	+	1	NA	NA	NA	-86	NM_033588	93713	Mm.247203	NM_033588	ENSMUSG00000103567	Pcdhga5	-	protocadherin gamma subfamily A, 5	protein-coding	0.035000	0.502488	
mm_27843.1	chr3	79156096	79156296	-	1	NA	NA	NA	-10321	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.020000	0.417910	16(CACTCTAAAGGC,-,0.00)
mm_65060.1	chr7	18798423	18798623	-	1	NA	NA	NA	-13	NM_011964	26439	Mm.36878	NM_011964	ENSMUSG00000004542	Psg19	CGM7|Cea-4|Cea4	pregnancy specific glycoprotein 19	protein-coding	0.005000	0.487562	
mm_130868.1	chr15	102204182	102204382	-	1	NA	NA	NA	-289	NM_001289690	68744	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0.050000	0.611940	
mm_20979.1	chr2	151973990	151974190	-	1	NA	NA	NA	-109	NM_028666	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.060000	0.646766	
mm_40800.1	chr5	67639788	67639988	+	1	NA	NA	NA	32005	NM_001033415	330096	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.025000	0.472637	
mm_14354.1	chr2	129608928	129609128	+	1	NA	NA	NA	15859	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.035000	0.482587	
mm_93568.1	chr10	116559177	116559377	-	1	NA	NA	NA	22234	NM_001037848	72068	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.005000	0.373134	
mm_55954.1	chr6	85374477	85374677	-	1	NA	NA	NA	57	NM_177466	52055	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0.120000	0.786070	
mm_21647.1	chr2	164333455	164333655	-	1	NA	NA	NA	790	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.040000	0.502488	-17(TGGTTTTAAAGG,-,0.00)
mm_69238.1	chr7	127745983	127746183	-	1	NA	NA	NA	-692	NM_172748	233902	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.070000	0.542289	
mm_88549.1	chr10	78591604	78591804	+	1	NA	NA	NA	260	NM_027875	71709	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	0.060000	0.641791	
mm_106510.1	chr11	120467347	120467547	-	1	NA	NA	NA	153	NM_197995	70317	Mm.485046	NM_197995	ENSMUSG00000057594	Arl16	2600005N12Rik	ADP-ribosylation factor-like 16	protein-coding	0.075000	0.587065	
mm_62290.1	chr7	99906434	99906634	+	1	NA	NA	NA	47316	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.005000	0.502488	
mm_73588.1	chr8	109991463	109991663	+	1	NA	NA	NA	1127	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.040000	0.527363	
mm_59472.1	chr7	27447921	27448121	+	1	NA	NA	NA	43	NM_144923	233016	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0.090000	0.666667	
mm_124589.1	chr15	3274563	3274763	+	1	NA	NA	NA	3686	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.005000	0.427861	
mm_64620.1	chr7	3629799	3629999	-	1	NA	NA	NA	30	NM_023524	69714	Mm.358730	NM_023524	ENSMUSG00000006335	Tfpt	2400004F01Rik|AI450389|Amida|FB1	TCF3 (E2A) fusion partner	protein-coding	0.095000	0.532338	
mm_6005.1	chr1	58973268	58973468	-	1	NA	NA	NA	114	NM_172406	70827	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	0.070000	0.646766	
mm_92280.1	chr10	71285118	71285318	-	1	NA	NA	NA	44	NM_145420	216080	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	0.145000	0.771144	
mm_91690.1	chr10	43997218	43997418	-	1	NA	NA	NA	7528	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.005000	0.482587	
mm_80401.1	chr9	77636411	77636611	+	1	NA	NA	NA	-221	NM_172925	244923	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0.025000	0.601990	
mm_12313.1	chr2	69135775	69135975	+	1	NA	NA	NA	75	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.040000	0.507463	
mm_124601.1	chr15	3277074	3277274	+	1	NA	NA	NA	6197	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.020000	0.462687	-25(CCTTTTAGATGT,+,0.00)
mm_161140.1	chr13	21440503	21440703	-	1	NA	NA	NA	107	NM_001162919	319207	Mm.434384	NM_001012311	ENSMUSG00000055313	Pgbd1	4921509E05Rik	piggyBac transposable element derived 1	protein-coding	0.025000	0.477612	
mm_36935.1	chr4	108579030	108579230	-	1	NA	NA	NA	206	NM_172697	230596	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	0.045000	0.432836	
mm_8071.1	chr1	135510282	135510482	-	1	NA	NA	NA	-55699	NR_049188	100885827		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0.085000	0.592040	
mm_102944.1	chr11	69605862	69606062	-	1	NA	NA	NA	-2	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.055000	0.656716	-33(GACTATAAAGAC,-,0.00)
mm_40735.1	chr5	66259775	66259975	+	1	NA	NA	NA	-23	NM_001302833	70918	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	0.050000	0.641791	
mm_148697.1	chr19	5741887	5742087	+	1	NA	NA	NA	1083	NM_008520	16998	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0.105000	0.741294	
mm_56187.1	chr6	88515317	88515517	-	1	NA	NA	NA	3383	NM_016906	53421	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0.040000	0.562189	
mm_13636.1	chr2	114047293	114047493	+	1	NA	NA	NA	5482	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.010000	0.422886	
mm_140243.1	chr17	84180867	84181067	+	1	NA	NA	NA	6980	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.020000	0.587065	
mm_35484.1	chr4	40875923	40876123	-	1	NA	NA	NA	-21486	NM_022305	14595	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0.025000	0.527363	
mm_145394.1	chr18	57142647	57142847	+	1	NA	NA	NA	9657	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.010000	0.477612	
mm_143822.1	chr17	83846797	83846997	-	1	NA	NA	NA	-107	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.020000	0.582090	
mm_91507.1	chr10	37136702	37136902	-	1	NA	NA	NA	2124	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.165000	0.796020	
mm_136825.1	chr17	12584126	12584326	+	1	NA	NA	NA	37	NM_013667	20518	Mm.17322	NM_013667	ENSMUSG00000040966	Slc22a2	Oct2|Orct2	solute carrier family 22 (organic cation transporter), member 2	protein-coding	0.025000	0.527363	
mm_111189.1	chr12	84174839	84175039	-	1	NA	NA	NA	19076	NM_001163502	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.010000	0.572139	-35(CGGCATAAAAGG,-,0.00)
mm_145031.1	chr18	39291349	39291549	+	1	NA	NA	NA	195796	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.000000	0.447761	-48(TCCCATAAAAAC,-,0.00),15(CCTTTTAAATTG,+,0.00)
mm_134782.1	chr16	23988134	23988334	-	1	NA	NA	NA	378	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.075000	0.522388	
mm_42498.1	chr5	115489216	115489416	+	1	NA	NA	NA	-4832	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.040000	0.457711	
mm_51290.1	chr6	72305552	72305752	+	1	NA	NA	NA	1042	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.010000	0.512438	
mm_166426.1	chr5	137152158	137152358	-	1	NA	NA	NA	-36051	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.487562	
mm_108712.1	chr12	87147075	87147275	+	1	NA	NA	NA	10	NM_001252555	14874	Mm.29652	NM_010363	ENSMUSG00000021033	Gstz1	MAAI	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	protein-coding	0.070000	0.646766	
mm_29027.1	chr3	102165832	102166032	-	1	NA	NA	NA	38761	NM_177545	229658	Mm.118004	NM_177545	ENSMUSG00000027860	Vangl1	Kitenin|Lpp2|Stb2|Stbm	vang-like 1 (van gogh, Drosophila)	protein-coding	0.030000	0.542289	
mm_32566.1	chr4	109676689	109676889	+	1	NA	NA	NA	162	NM_007983	14084	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	0.130000	0.751244	
mm_35157.1	chr4	12171732	12171932	-	1	NA	NA	NA	183	NM_001310743	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.160000	0.781095	
mm_11314.1	chr2	30322396	30322596	+	1	NA	NA	NA	36063	NM_198304	227699	Mm.330119	NM_198304	ENSMUSG00000052533	Nup188	BC025526|U89435|mKIAA0169	nucleoporin 188	protein-coding	0.030000	0.527363	
mm_9985.1	chr1	191269217	191269417	-	1	NA	NA	NA	48801	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.010000	0.517413	
mm_29854.1	chr3	130040947	130041147	-	1	NA	NA	NA	19860	NM_207209	99683	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.020000	0.492537	
mm_99542.1	chr11	103266101	103266301	+	1	NA	NA	NA	1200	NM_016896	53859	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.010000	0.492537	
mm_131486.1	chr16	17222214	17222414	+	1	NA	NA	NA	-11273	NM_178922	58180	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0.100000	0.666667	
mm_158287.1	chrX	112406963	112407163	-	1	NA	NA	NA	-284	NM_028655	73809	Mm.50508	NM_028655	ENSMUSG00000025527	Satl1	4930404K22Rik	spermidine/spermine N1-acetyl transferase-like 1	protein-coding	0.005000	0.482587	
mm_49372.1	chr6	24528093	24528293	+	1	NA	NA	NA	49	NM_080847	78910	Mm.160150	NM_080847	ENSMUSG00000029685	Asb15	4930400E23Rik|Asb-15	ankyrin repeat and SOCS box-containing 15	protein-coding	0.015000	0.417910	-34(GGCTTTATAAAA,-,0.00),-32(CTTTATAAAAGA,-,0.00)
mm_169901.1	chr16	52083694	52083894	+	1	NA	NA	NA	52245	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.000000	0.517413	
mm_97359.1	chr11	77503763	77503963	+	1	NA	NA	NA	9410	NM_001024920	216964	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	0.020000	0.606965	
mm_109883.1	chr12	5201022	5201222	-	1	NA	NA	NA	174560	NM_001164493	208439	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.000000	0.427861	
mm_76186.1	chr8	82402399	82402599	-	1	NA	NA	NA	87	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.025000	0.557214	
mm_127366.1	chr15	100747307	100747507	+	1	NA	NA	NA	-14340	NM_021530	59033	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0.060000	0.587065	
mm_93190.1	chr10	93891068	93891268	-	1	NA	NA	NA	34	NM_019648	56307	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	0.005000	0.472637	
mm_108891.1	chr12	100010662	100010862	+	1	NA	NA	NA	46263	NM_001164427	217826	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.005000	0.393035	
mm_115521.1	chr13	5860707	5860907	-	1	NA	NA	NA	-682	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.040000	0.572139	
mm_89242.1	chr10	87858511	87858711	+	1	NA	NA	NA	346	NM_001314010	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.005000	0.532338	
mm_3842.1	chr1	160044513	160044713	+	1	NA	NA	NA	233	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.040000	0.656716	
mm_98615.1	chr11	95843511	95843711	+	1	NA	NA	NA	366	NM_001284397	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.020000	0.582090	
mm_33047.1	chr4	122998741	122998941	+	1	NA	NA	NA	2910	NM_008506	16918	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	0.020000	0.492537	
mm_166587.1	chr6	55335966	55336166	+	1	NA	NA	NA	-233	NM_007472	11826	Mm.18625	NM_007472	ENSMUSG00000004655	Aqp1	CHIP28	aquaporin 1	protein-coding	0.010000	0.601990	
mm_142203.1	chr17	36972825	36973025	-	1	NA	NA	NA	8312	NM_029747	76797	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding	0.010000	0.527363	
mm_138716.1	chr17	36271358	36271558	+	1	NA	NA	NA	-25	NM_178281	79263	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0.155000	0.776119	
mm_7286.1	chr1	97761502	97761702	-	1	NA	NA	NA	8490	NM_173760	227399	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	0.010000	0.437811	27(GACTATTTAAAC,-,0.00)
mm_84418.1	chr9	65579952	65580152	-	1	NA	NA	NA	35	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.120000	0.741294	
mm_77209.1	chr8	114013710	114013910	-	1	NA	NA	NA	-119764	NM_024446	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	0.005000	0.467662	
mm_160753.1	chr10	81771061	81771261	-	1	NA	NA	NA	13	NM_001346707	100040944		NM_001346707		Gm3055	-	predicted gene 3055	protein-coding	0.080000	0.587065	
mm_10987.1	chr2	26278607	26278807	+	1	NA	NA	NA	15850	NM_177841	329366	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding	0.005000	0.497512	
mm_141794.1	chr17	34342922	34343122	-	1	NA	NA	NA	1623	NM_010381	100504404	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	0.025000	0.467662	
mm_115550.1	chr13	8871623	8871823	-	1	NA	NA	NA	13	NM_001039388	207615	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.000000	0.462687	
mm_94941.1	chr11	29712716	29712916	+	1	NA	NA	NA	-5747	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.005000	0.358209	
mm_166134.1	chr4	155630454	155630654	+	1	NA	NA	NA	5685	NM_007661	12537	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	0.010000	0.407960	
mm_69623.1	chr7	137314182	137314382	-	1	NA	NA	NA	163	NM_001113415	13593	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.140000	0.711443	
mm_87989.1	chr10	64314425	64314625	+	1	NA	NA	NA	-224270	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.005000	0.373134	
mm_103686.1	chr11	79483364	79483564	-	1	NA	NA	NA	567	NR_045305	104522	Mm.436987	NR_045305	ENSMUSG00000091523	AU040972	AU040954	expressed sequence AU040972	ncRNA	0.030000	0.437811	
mm_46943.1	chr5	114826236	114826436	-	1	NA	NA	NA	-2868	NM_181075	330173	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	0.040000	0.651741	
mm_124034.1	chr14	77032359	77032559	-	1	NA	NA	NA	4158	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding	0.020000	0.407960	-32(GTATTTAAAAAG,-,0.00)
mm_70494.1	chr8	12589099	12589299	+	1	NA	NA	NA	16150	NM_024279	78634	Mm.116871	NM_024279	ENSMUSG00000010435	Spaca7	1700094C09Rik	sperm acrosome associated 7	protein-coding	0.015000	0.422886	
mm_143099.1	chr17	57081076	57081276	-	1	NA	NA	NA	-2666	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.050000	0.582090	
mm_132681.1	chr16	42947807	42948007	+	1	NA	NA	NA	-7673	NR_002445	170658	Mm.375824	NR_002445		BC002163	-	NADH dehydrogenase Fe-S protein 5 pseudogene	pseudo	0.005000	0.308458	
mm_14097.1	chr2	125229347	125229547	+	1	NA	NA	NA	-17801	NM_001159646	110074	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0.005000	0.373134	
mm_135588.1	chr16	50590996	50591196	-	1	NA	NA	NA	58	NM_027046	69339	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	0.005000	0.457711	
mm_158693.1	chrX	160994551	160994751	-	1	NA	NA	NA	30	NM_001024624	382253	Mm.443717	NM_001024624	ENSMUSG00000031292	Cdkl5	BC038161|Stk9	cyclin-dependent kinase-like 5	protein-coding	0.120000	0.651741	
mm_25634.1	chr3	119987433	119987633	+	1	NA	NA	NA	-204145	NM_019550	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.000000	0.373134	
mm_163309.1	chr12	4593715	4593915	+	1	NA	NA	NA	807	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.040000	0.477612	14(GGGTATATATAG,-,0.00),63(GCTTATTTAAGG,-,0.00)
mm_55095.1	chr6	49338592	49338792	-	1	NA	NA	NA	19418	NM_001311112	57895	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	0.025000	0.492537	
mm_42326.1	chr5	114901316	114901516	+	1	NA	NA	NA	4482	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.025000	0.517413	
mm_29773.1	chr3	127282251	127282451	-	1	NA	NA	NA	121046	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.020000	0.477612	
mm_128326.1	chr15	38078729	38078929	-	1	NA	NA	NA	25	NM_001112721	70790	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.175000	0.805970	
mm_165800.1	chr3	141495102	141495302	+	1	NA	NA	NA	29638	NM_001293561	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.000000	0.263682	
mm_101616.1	chr11	35835928	35836128	-	1	NA	NA	NA	-1500	NM_025936	104458	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.005000	0.388060	
mm_146233.1	chr18	77144216	77144416	+	1	NA	NA	NA	-41531	NM_153124	225742	Mm.365178	NM_013666	ENSMUSG00000025425	St8sia5	ST8SiaV|Siat8e	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding	0.000000	0.323383	
mm_129990.1	chr15	86160332	86160532	-	1	NA	NA	NA	25709	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.005000	0.447761	
mm_129315.1	chr15	77760857	77761057	-	1	NA	NA	NA	-5728	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.010000	0.442786	
mm_147781.1	chr18	61575384	61575584	-	1	NA	NA	NA	19902	NM_146087	93687	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0.010000	0.393035	73(AACTTTAAAAGA,-,0.00),74(ACTTTAAAAGAG,+,0.00)
mm_120153.1	chr14	60635780	60635980	+	1	NA	NA	NA	1175	NM_001033272	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.015000	0.407960	-73(CACTTTTAAAGC,-,0.00),-72(ACTTTTAAAGCA,+,0.00),-71(CTTTTAAAGCAC,+,0.00)
mm_125873.1	chr15	75615063	75615263	+	1	NA	NA	NA	-1521	NM_001044718	22701	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0.015000	0.492537	
mm_141017.1	chr17	25115658	25115858	-	1	NA	NA	NA	147	NM_027880	71718	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	0.065000	0.626866	
mm_76638.1	chr8	92356011	92356211	-	1	NA	NA	NA	9	NR_110452	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	0.095000	0.656716	
mm_23226.1	chr3	49113859	49114059	+	1	NA	NA	NA	-504859	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo	0.005000	0.293532	
mm_12816.1	chr2	80315624	80315824	+	1	NA	NA	NA	258	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.140000	0.761194	
mm_49671.1	chr6	31327165	31327365	+	1	NA	NA	NA	71508	NR_040300	100503869	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845|OTTMUSG00000014733	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0.000000	0.308458	
mm_136981.1	chr17	16951438	16951638	+	1	NA	NA	NA	-112565	NM_001005358	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	0.025000	0.517413	
mm_95191.1	chr11	42630337	42630537	+	1	NA	NA	NA	209087	NM_001347314	14401	Mm.338723	NM_008070	ENSMUSG00000007653	Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding	0.000000	0.343284	
mm_107117.1	chr12	18390809	18391009	+	1	NA	NA	NA	-123601	NM_001033157	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.075000	0.582090	-33(TCATATAAAGGG,+,0.00)
mm_117520.1	chr13	81252997	81253197	-	1	NA	NA	NA	289023	NR_015587	319983	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.000000	0.442786	
mm_124182.1	chr14	93890582	93890782	-	1	NA	NA	NA	-3	NM_001346722	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.040000	0.552239	
mm_103746.1	chr11	80142906	80143106	-	1	NA	NA	NA	-853	NM_183275	68550	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0.030000	0.542289	-35(TGCTCTAAAAGG,-,0.00)
mm_129813.1	chr15	82998842	82999042	-	1	NA	NA	NA	24196	NM_028728	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.010000	0.512438	
mm_169527.1	chr1	49150148	49150348	+	1	NA	NA	NA	-1683123	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA	0.010000	0.482587	-24(CCCTTTATAAGT,-,0.00)
mm_172178.1	chr6	48686274	48686474	+	1	NA	NA	NA	1796	NM_174990	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.000000	0.452736	
mm_102515.1	chr11	60810926	60811126	-	1	NA	NA	NA	239	NM_009171	20425	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	0.065000	0.567164	
mm_123874.1	chr14	72602916	72603116	-	1	NA	NA	NA	106987	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.050000	0.447761	
mm_61283.1	chr7	67222505	67222705	+	1	NA	NA	NA	-11	NM_001191051	75099	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.055000	0.671642	
mm_25567.1	chr3	116598096	116598296	+	1	NA	NA	NA	3238	NM_001289571	72776	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	0.025000	0.482587	
mm_85561.1	chr9	106891296	106891496	-	1	NA	NA	NA	542	NM_029103	74840	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	0.010000	0.482587	
mm_48394.1	chr5	139819853	139820053	-	1	NA	NA	NA	-5670	NM_001161548	231832	Mm.482655	NM_144914	ENSMUSG00000036687	Tmem184a	Sdmg1	transmembrane protein 184a	protein-coding	0.005000	0.611940	
mm_171839.1	chr5	149661173	149661373	-	1	NA	NA	NA	-16984	NM_001081204	381694	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	0.025000	0.482587	
mm_150838.1	chr19	44918446	44918646	+	1	NA	NA	NA	-12573	NM_001081225	226151	Mm.212609	NM_172638	ENSMUSG00000036097	Fam178a	3632432H19|6030443O07Rik|AU014917|Slf2	family with sequence similarity 178, member A	protein-coding	0.030000	0.437811	
mm_135057.1	chr16	33966903	33967103	-	1	NA	NA	NA	0	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.090000	0.651741	
mm_143271.1	chr17	65643852	65644052	-	1	NA	NA	NA	-1748	NM_001146002	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.020000	0.477612	
mm_128985.1	chr15	74834444	74834644	-	1	NA	NA	NA	7099	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.000000	0.378109	
mm_42442.1	chr5	115429868	115430068	+	1	NA	NA	NA	283	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.105000	0.751244	
mm_18546.1	chr2	64975642	64975842	-	1	NA	NA	NA	47024	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0.015000	0.522388	
mm_172362.1	chr7	120326182	120326382	+	1	NA	NA	NA	-2402	NM_177213	320631	Mm.78330	NM_177213	ENSMUSG00000054746	Abca15	4930500I12Rik	ATP-binding cassette, sub-family A (ABC1), member 15	protein-coding	0.010000	0.522388	-27(CCTTTTATAAGC,+,0.00),-27(CCTTTTATAAGC,-,0.00)
mm_82434.1	chr9	15112010	15112210	-	1	NA	NA	NA	-2	NM_001164797	244698	Mm.325134	NM_001164797	ENSMUSG00000031936	Hephl1	Gm509|Zp|zyklopen	hephaestin-like 1	protein-coding	0.015000	0.522388	
mm_69926.1	chr7	141902305	141902505	-	1	NA	NA	NA	1	NM_023764	54473	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	0.095000	0.691542	
mm_40857.1	chr5	73557185	73557385	+	1	NA	NA	NA	66259	NM_178896	100737	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.030000	0.472637	
mm_169463.1	chr14	65666273	65666473	+	1	NA	NA	NA	-30	NM_028903	71145	Mm.83840	NM_028903	ENSMUSG00000022032	Scara5	4932433F15Rik|4933425F03Rik|AV278087|Tesr	scavenger receptor class A, member 5	protein-coding	0.025000	0.492537	
mm_84186.1	chr9	60141135	60141335	-	1	NA	NA	NA	-15	NM_172444	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.020000	0.577114	
mm_48669.1	chr5	145997178	145997378	-	1	NA	NA	NA	12339	NM_019792	56388	Mm.301900	NM_019792	ENSMUSG00000029630	Cyp3a25	AI327008	cytochrome P450, family 3, subfamily a, polypeptide 25	protein-coding	0.000000	0.388060	
mm_133872.1	chr16	96372746	96372946	+	1	NA	NA	NA	11082	NM_028078	72058	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.020000	0.452736	
mm_85121.1	chr9	95472006	95472206	-	1	NA	NA	NA	39890	NM_026476	67958	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0.020000	0.412935	
mm_162708.1	chr10	24223344	24223544	+	1	NA	NA	NA	-73	NM_021509	59012	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	0.050000	0.651741	
mm_35147.1	chr4	11958845	11959045	-	1	NA	NA	NA	6768	NM_001098231	381511	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	0.005000	0.333333	
mm_154140.1	chr19	57418493	57418693	-	1	NA	NA	NA	-34313	NM_029839	72133	Mm.258404	NM_028115	ENSMUSG00000025086	Trub1	2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870	TruB pseudouridine (psi) synthase family member 1	protein-coding	0.020000	0.527363	56(GGCTCTTTGAGG,-,0.00)
mm_44690.1	chr5	30155407	30155607	-	1	NA	NA	NA	254	NM_001289798	231086	Mm.291463	NM_145558	ENSMUSG00000059447	Hadhb	4930479F15Rik|Mtpb|TP-beta	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit	protein-coding	0.105000	0.621891	
mm_8373.1	chr1	150993048	150993248	-	1	NA	NA	NA	287	NM_001024720	545370	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.020000	0.487562	
mm_168097.1	chr10	128909774	128909974	+	1	NA	NA	NA	8	NM_007653	12512	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.110000	0.766169	
mm_8992.1	chr1	165707994	165708194	-	1	NA	NA	NA	0	NM_178593	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.080000	0.711443	
mm_39397.1	chr5	14025381	14025581	+	1	NA	NA	NA	205	NM_011348	20349	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	0.050000	0.601990	
mm_123445.1	chr14	65097966	65098166	-	1	NA	NA	NA	40	NM_018788	54616	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.125000	0.731343	
mm_20579.1	chr2	131146476	131146676	-	1	NA	NA	NA	13444	NM_026091	67326	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	0.010000	0.582090	
mm_152848.1	chr19	24030917	24031117	-	1	NA	NA	NA	2	NM_001114174	381217	Mm.426078	NM_001114174	ENSMUSG00000071604	Fam189a2	AI414343|AI666772|Gm967	family with sequence similarity 189, member A2	protein-coding	0.185000	0.830846	
mm_142629.1	chr17	47400460	47400660	-	1	NA	NA	NA	46	NM_008189	14913	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	0.030000	0.497512	-63(CTTTTAATACCG,+,0.00)
mm_138822.1	chr17	39847651	39847851	+	1	NA	NA	NA	4754	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.075000	0.532338	
mm_121830.1	chr14	20496617	20496817	-	1	NA	NA	NA	184	NM_029104	74843	Mm.295241	NM_029104	ENSMUSG00000021815	Mss51	4833444M15Rik|Zmynd17	MSS51 mitochondrial translational activator	protein-coding	0.005000	0.462687	
mm_107850.1	chr12	69374509	69374709	+	1	NA	NA	NA	2459	NM_007481	11845	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.015000	0.432836	
mm_75137.1	chr8	35250596	35250796	-	1	NA	NA	NA	-125045	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.010000	0.487562	
mm_62162.1	chr7	97210116	97210316	+	1	NA	NA	NA	115748	NM_001177412	244144	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.000000	0.393035	
mm_64591.1	chr7	3169003	3169203	-	1	NA	NA	NA	100	NM_001004153	245128	Mm.268551	NM_001004153	ENSMUSG00000054753	AU018091	-	expressed sequence AU018091	protein-coding	0.010000	0.542289	
mm_76333.1	chr8	84708411	84708611	-	1	NA	NA	NA	7054	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.040000	0.577114	
mm_110422.1	chr12	46818249	46818449	-	1	NA	NA	NA	426	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.055000	0.562189	
mm_57623.1	chr6	128243391	128243591	-	1	NA	NA	NA	57322	NM_001080979	21679	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	0.030000	0.587065	
mm_104253.1	chr11	88924172	88924372	-	1	NA	NA	NA	18344	NR_045955	73921	Mm.439148	NR_045955	ENSMUSG00000087338	Scpep1os	4930405P13Rik	serine carboxypeptidase 1, opposite strand	ncRNA	0.015000	0.472637	
mm_7891.1	chr1	133258447	133258647	-	1	NA	NA	NA	11261	NR_037984	100502933	Mm.487491	NR_037984	ENSMUSG00000101693	Gm19461	-	predicted gene, 19461	ncRNA	0.015000	0.502488	58(CCCTTTAAGAGG,-,0.00),59(CCTTTAAGAGGA,+,0.00)
mm_165417.1	chr2	148021954	148022154	-	1	NA	NA	NA	23410	NM_001291067	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.010000	0.522388	
mm_110658.1	chr12	59070116	59070316	-	1	NA	NA	NA	3297	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.035000	0.467662	
mm_124815.1	chr15	8968291	8968491	+	1	NA	NA	NA	442	NM_198024	223332	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0.055000	0.502488	
mm_108061.1	chr12	73931466	73931666	+	1	NA	NA	NA	23699	NM_001313919	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.015000	0.412935	
mm_61024.1	chr7	49516775	49516975	+	1	NA	NA	NA	119960	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.005000	0.402985	
mm_34345.1	chr4	144520128	144520328	+	1	NA	NA	NA	406	NM_198662	381572	Mm.184290	NM_198662	ENSMUSG00000028593	9430007A20Rik	Aadacl4|Gm1034	RIKEN cDNA 9430007A20 gene	protein-coding	0.005000	0.412935	
mm_115272.1	chr13	111685994	111686194	+	1	NA	NA	NA	-84	NM_172593	218613	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0.160000	0.815920	
mm_166325.1	chr5	112292013	112292213	+	1	NA	NA	NA	15422	NM_009419	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.020000	0.592040	
mm_50134.1	chr6	41542554	41542754	+	1	NA	NA	NA	20878	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.015000	0.467662	
mm_54992.1	chr6	48770714	48770914	-	1	NA	NA	NA	37	NM_031247	83408	Mm.333050	NM_031247	ENSMUSG00000039264	Gimap3	2010110D23Rik|Gimap5|Ian4	GTPase, IMAP family member 3	protein-coding	0.010000	0.487562	
mm_148078.1	chr18	72350999	72351199	-	1	NA	NA	NA	-30	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.060000	0.572139	
mm_161326.1	chr14	50084422	50084622	-	1	NA	NA	NA	157	NM_146316	258313	Mm.463727	NM_146316	ENSMUSG00000060523	Olfr726	MOR246-4	olfactory receptor 726	protein-coding	0.005000	0.437811	41(TCTTTTATAGAT,+,0.00)
mm_6720.1	chr1	82482635	82482835	-	1	NA	NA	NA	104114	NM_007735	12829	Mm.40253	NM_007735	ENSMUSG00000067158	Col4a4	E130010M05Rik|[a]4(IV)	collagen, type IV, alpha 4	protein-coding	0.005000	0.363184	
mm_105140.1	chr11	101459642	101459842	-	1	NA	NA	NA	6457	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.035000	0.606965	
mm_172203.1	chr6	54098511	54098711	+	1	NA	NA	NA	58679	NM_001163640	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.015000	0.452736	
mm_70015.1	chr7	142511991	142512191	-	1	NA	NA	NA	-5320	NR_033261	677289	Mm.350054	NR_033261	ENSMUSG00000043795	Prr33	ENSMUSG00000043795|Gm14492|OTTMUSG00000016823	proline rich 33	ncRNA	0.005000	0.557214	
mm_27106.1	chr3	30647681	30647881	-	1	NA	NA	NA	37	NM_027941	71827	Mm.45373	NM_027941	ENSMUSG00000027702	Lrrc34	1700007J06Rik|SPATA34	leucine rich repeat containing 34	protein-coding	0.060000	0.621891	
mm_53059.1	chr6	124829485	124829685	+	1	NA	NA	NA	-101	NM_013700	22225	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	0.065000	0.616915	
mm_21097.1	chr2	153231571	153231771	-	1	NA	NA	NA	-6230	NM_198617	241732	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.020000	0.587065	
mm_78205.1	chr9	21424903	21425103	+	1	NA	NA	NA	95	NM_001039520	13430	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0.130000	0.701493	
mm_19774.1	chr2	105959467	105959667	-	1	NA	NA	NA	43982	NM_026992	99349	Mm.25661	NM_026992	ENSMUSG00000027166	Dnajc24	1700030A21Rik|2610027M02Rik|AV066965|AW240712|Dph4|MmDjC7|Zcsl3	DnaJ heat shock protein family (Hsp40) member C24	protein-coding	0.005000	0.298507	
mm_135297.1	chr16	38622255	38622455	-	1	NA	NA	NA	59541	NM_026407	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.000000	0.412935	
mm_87773.1	chr10	60294499	60294699	+	1	NA	NA	NA	10138	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.020000	0.562189	
mm_155057.1	chrX	42374523	42374723	+	1	NA	NA	NA	-127942	NM_011364	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	0.005000	0.333333	
mm_10094.1	chr2	3333061	3333261	+	1	NA	NA	NA	-533	NM_001013376	227522	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0.030000	0.487562	
mm_102815.1	chr11	68973185	68973385	-	1	NA	NA	NA	570	NM_021329	57785	Mm.143774	NM_021329	ENSMUSG00000032892	Rangrf	2400006H24Rik|Mog1|Rangnrf	RAN guanine nucleotide release factor	protein-coding	0.030000	0.567164	
mm_170064.1	chr17	30626889	30627089	+	1	NA	NA	NA	53	NM_013811	13417	Mm.426017	NM_013811	ENSMUSG00000033826	Dnah8	ATPase|Dnahc8|Hst6.7b|P1-Loop	dynein, axonemal, heavy chain 8	protein-coding	0.040000	0.587065	
mm_157599.1	chrX	53269722	53269922	-	1	NA	NA	NA	-17	NM_001166583	78755	Mm.28559	NM_030167	ENSMUSG00000036022	Fam122b	4632404H22Rik|AI256344|SPACIA2	family with sequence similarity 122, member B	protein-coding	0.065000	0.601990	
mm_22833.1	chr3	27317012	27317212	+	1	NA	NA	NA	35	NM_009425	22035	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.005000	0.512438	
mm_131903.1	chr16	23268371	23268571	+	1	NA	NA	NA	-21999	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.025000	0.567164	
mm_10943.1	chr2	25501747	25501947	+	1	NA	NA	NA	-128	NM_001271777	69379	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	0.025000	0.597015	
mm_88004.1	chr10	67096273	67096473	+	1	NA	NA	NA	615	NM_001204915	28193	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.155000	0.746269	
mm_84667.1	chr9	71996539	71996739	-	1	NA	NA	NA	33198	NR_029879	723889		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.010000	0.393035	
mm_111252.1	chr12	84946822	84947022	-	1	NA	NA	NA	23964	NM_178065	68497	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	0.005000	0.537313	
mm_116572.1	chr13	47100111	47100311	-	1	NA	NA	NA	6010	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.020000	0.348259	6(CAGTATAAAAAG,-,0.00)
mm_169096.1	chr1	34109662	34109862	+	1	NA	NA	NA	-7597	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.010000	0.497512	
mm_58644.1	chr7	6252644	6252844	+	1	NA	NA	NA	34	NM_001177416	627821	Mm.99441	NM_001177416	ENSMUSG00000053367	Gm6792	EG627821	predicted gene 6792	protein-coding	0.015000	0.562189	
mm_86396.1	chr9	123968519	123968719	-	1	NA	NA	NA	73	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.005000	0.482587	
mm_43756.1	chr5	140505543	140505743	+	1	NA	NA	NA	34	NM_021528	59031	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0.105000	0.696517	
mm_38688.1	chr4	145194880	145195080	-	1	NA	NA	NA	25	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.085000	0.646766	
mm_137242.1	chr17	24470728	24470928	+	1	NA	NA	NA	355	NM_025954	67078	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	0.115000	0.701493	
mm_40036.1	chr5	33721685	33721885	+	1	NA	NA	NA	61	NM_001163215	14184	Mm.6904	NM_008010	ENSMUSG00000054252	Fgfr3	CD333|FR3|Fgfr-3|Flg-2|HBGFR|Mfr3|sam3	fibroblast growth factor receptor 3	protein-coding	0.105000	0.776119	
mm_118461.1	chr14	9885878	9886078	+	1	NA	NA	NA	1883	NR_030680	100042415	Mm.235938	NR_030680		Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.030000	0.547264	
mm_148790.1	chr19	6164356	6164556	+	1	NA	NA	NA	-2	NM_028967	74481	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	4933430F08Rik	basic leucine zipper transcription factor, ATF-like 2	protein-coding	0.010000	0.562189	
mm_105314.1	chr11	102880887	102881087	-	1	NA	NA	NA	-12	NM_001109995	20624	Mm.873	NM_011431	ENSMUSG00000020929	Eftud2	116kDa|Snrp116|U5-116kD	elongation factor Tu GTP binding domain containing 2	protein-coding	0.140000	0.706468	
mm_94900.1	chr11	29178320	29178520	+	1	NA	NA	NA	5513	NM_134034	104570	Mm.276386	NM_134034	ENSMUSG00000020463	Smek2	AW011752|AW557776|Ppp4r3b|mKIAA1387	SMEK homolog 2, suppressor of mek1 (Dictyostelium)	protein-coding	0.000000	0.333333	
mm_9186.1	chr1	171113850	171114050	-	1	NA	NA	NA	-7711	NM_001081275	75472	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.065000	0.592040	
mm_91.1	chr1	7098029	7098229	+	1	NA	NA	NA	9209	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.005000	0.353234	
mm_68378.1	chr7	109170443	109170643	-	1	NA	NA	NA	-24	NM_057173	109594	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0.055000	0.542289	
mm_11093.1	chr2	27911791	27911991	+	1	NA	NA	NA	25466	NM_015734	12831	Mm.7281	NM_015734	ENSMUSG00000026837	Col5a1	AI413331	collagen, type V, alpha 1	protein-coding	0.000000	0.437811	
mm_72644.1	chr8	84701809	84702009	+	1	NA	NA	NA	452	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.045000	0.592040	
mm_127033.1	chr15	96402908	96403108	+	1	NA	NA	NA	57835	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.000000	0.348259	
mm_114839.1	chr13	92610998	92611198	+	1	NA	NA	NA	-40	NM_172588	218442	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.105000	0.696517	
mm_70528.1	chr8	13012313	13012513	+	1	NA	NA	NA	-13621	NM_010172	14068	Mm.4827	NM_010172	ENSMUSG00000031443	F7	AI132620|Cf7|FVII	coagulation factor VII	protein-coding	0.005000	0.502488	
mm_29574.1	chr3	116968833	116969033	-	1	NA	NA	NA	19	NM_023245	114301	Mm.253736	NM_023245	ENSMUSG00000033377	Palmd	4631423C22Rik|PALML	palmdelphin	protein-coding	0.040000	0.512438	
mm_108263.1	chr12	78691428	78691628	+	1	NA	NA	NA	-7	NM_027597	70897	Mm.56514	NM_027597	ENSMUSG00000056987	Fam71d	4921509E07Rik|4930516C23Rik|GARI-L2	family with sequence similarity 71, member D	protein-coding	0.000000	0.427861	
mm_142093.1	chr17	35834385	35834585	-	1	NA	NA	NA	3816	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.005000	0.417910	
mm_152482.1	chr19	11048241	11048441	-	1	NA	NA	NA	2225	NR_102366	107350	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.020000	0.442786	
mm_93896.1	chr10	125389267	125389467	-	1	NA	NA	NA	-60832	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.090000	0.676617	
mm_88859.1	chr10	80930760	80930960	+	1	NA	NA	NA	769	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.035000	0.552239	24(TCTTATATACAC,+,0.00)
mm_48333.1	chr5	139039054	139039254	-	1	NA	NA	NA	-44201	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.005000	0.407960	-73(GTGTTTATAAGC,-,0.00),-63(GCATTTAAAGGT,+,0.00)
mm_114834.1	chr13	92425894	92426094	+	1	NA	NA	NA	25	NM_175455	218440	Mm.213623	NM_175455	ENSMUSG00000045034	Ankrd34b	6430502M16Rik|DP58	ankyrin repeat domain 34B	protein-coding	0.135000	0.776119	
mm_111497.1	chr12	99376851	99377051	-	1	NA	NA	NA	73123	NM_183186	71375	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.025000	0.512438	
mm_10677.1	chr2	21367508	21367708	+	1	NA	NA	NA	41	NM_001004761	241263	Mm.166647	NM_175706	ENSMUSG00000045967	Gpr158	5330427M13Rik|mKIAA1136	G protein-coupled receptor 158	protein-coding	0.040000	0.522388	
mm_149391.1	chr19	11386728	11386928	+	1	NA	NA	NA	11340	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.000000	0.318408	
mm_91561.1	chr10	40025063	40025263	-	1	NA	NA	NA	105	NM_144821	215929	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.050000	0.656716	
mm_2872.1	chr1	131761460	131761660	+	1	NA	NA	NA	17538	NM_177243	320718	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	0.010000	0.492537	
mm_58687.1	chr7	12835155	12835355	+	1	NA	NA	NA	445	NM_022981	65020	Mm.292297	NM_022981	ENSMUSG00000058638	Zfp110	2900024E01Rik|N28112|NRIF|Nrif1	zinc finger protein 110	protein-coding	0.040000	0.492537	
mm_171785.1	chr5	110118626	110118826	-	1	NA	NA	NA	8634	NM_001163996	675812	Mm.442122	NM_001163996	ENSMUSG00000023284	Zfp605	A830023I12Rik	zinc finger protein 605	protein-coding	0.015000	0.417910	
mm_36456.1	chr4	82505216	82505416	-	1	NA	NA	NA	463	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.125000	0.681592	
mm_80191.1	chr9	72394250	72394450	+	1	NA	NA	NA	-44179	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.005000	0.442786	-96(AGCTATAAATAG,-,0.00),-94(CTATAAATAGCC,+,0.00)
mm_79280.1	chr9	50803415	50803615	+	1	NA	NA	NA	28290	NR_045601	102580	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	0.005000	0.562189	
mm_102608.1	chr11	62456425	62456625	-	1	NA	NA	NA	807	NM_177229	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.030000	0.427861	
mm_7944.1	chr1	133914822	133915022	-	1	NA	NA	NA	6479	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.025000	0.582090	
mm_73285.1	chr8	104846970	104847170	+	1	NA	NA	NA	2	NM_145603	234671	Mm.28191	NM_145603	ENSMUSG00000061825	Ces2c	ACH M1|CES 2|Ces2|ces2A3	carboxylesterase 2C	protein-coding	0.010000	0.462687	
mm_25385.1	chr3	107215886	107216086	+	1	NA	NA	NA	5746	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.512438	
mm_115088.1	chr13	102705985	102706185	+	1	NA	NA	NA	12527	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.010000	0.482587	
mm_92425.1	chr10	77085294	77085494	-	1	NA	NA	NA	28311	NM_001109991	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.015000	0.567164	
mm_127885.1	chr15	8710371	8710571	-	1	NA	NA	NA	336	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.040000	0.577114	
mm_14507.1	chr2	132253313	132253513	+	1	NA	NA	NA	-233	NM_011045	18538	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0.080000	0.601990	
mm_49554.1	chr6	30543926	30544126	+	1	NA	NA	NA	2384	NM_001024698	232680	Mm.268855	NM_001024698	ENSMUSG00000071553	Cpa2	-	carboxypeptidase A2, pancreatic	protein-coding	0.020000	0.477612	
mm_141303.1	chr17	28177562	28177762	-	1	NA	NA	NA	244	NM_172617	224656	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	0.075000	0.761194	
mm_124947.1	chr15	12350085	12350285	+	1	NA	NA	NA	28689	NM_025673	66629	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.010000	0.427861	
mm_155082.1	chrX	47912375	47912575	+	1	NA	NA	NA	19	NM_177215	320634	Mm.210343	NM_177215	ENSMUSG00000001173	Ocrl	9530014D17Rik|BB143339|OCRL1	oculocerebrorenal syndrome of Lowe	protein-coding	0.090000	0.741294	
mm_25960.1	chr3	132629829	132630029	+	1	NA	NA	NA	-262	NM_001270430	433653		NM_001270430	ENSMUSG00000091721	Gimd1	EG433653|Gm5549	GIMAP family P-loop NTPase domain containing 1	protein-coding	0.020000	0.373134	
mm_52486.1	chr6	114643082	114643282	+	1	NA	NA	NA	85	NM_001253717	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.080000	0.611940	
mm_25473.1	chr3	108774826	108775026	+	1	NA	NA	NA	35268	NM_177859	329738	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	0.025000	0.547264	
mm_21084.1	chr2	152951569	152951769	-	1	NA	NA	NA	-87	NM_001159376	252864	Mm.330671	NM_145744	ENSMUSG00000042662	Dusp15	AI851682|LMW-DSP10|T-DSP10	dual specificity phosphatase-like 15	protein-coding	0.110000	0.771144	
mm_115425.1	chr13	117220646	117220846	+	1	NA	NA	NA	173	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.090000	0.681592	
mm_19727.1	chr2	104493481	104493681	-	1	NA	NA	NA	908	NM_010434	15259	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.125000	0.681592	
mm_69424.1	chr7	132776783	132776983	-	1	NA	NA	NA	33	NM_001347630	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.005000	0.577114	
mm_172644.1	chr8	26054109	26054309	+	1	NA	NA	NA	-28400	NR_110583	76604	Mm.437190	NR_110583	ENSMUSG00000085437	1700047A11Rik	4930554C15Rik	RIKEN cDNA 1700047A11 gene	ncRNA	0.025000	0.467662	-27(CTTTAAATACCC,+,0.00)
mm_170647.1	chr19	9861228	9861428	+	1	NA	NA	NA	38205	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.010000	0.402985	-79(CTTTATATGCCC,+,0.00)
mm_166319.1	chr5	110808480	110808680	+	1	NA	NA	NA	1501	NM_009469	22241	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	0.030000	0.577114	
mm_152320.1	chr19	9931081	9931281	-	1	NA	NA	NA	-31648	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.010000	0.542289	
mm_28971.1	chr3	101012055	101012255	-	1	NA	NA	NA	17340	NM_001167906	630146	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0.035000	0.527363	
mm_88308.1	chr10	75406871	75407071	+	1	NA	NA	NA	60	NM_133995	103149	Mm.441195	NM_133995	ENSMUSG00000033427	Upb1	AI195023	ureidopropionase, beta	protein-coding	0.030000	0.616915	
mm_18534.1	chr2	64097799	64097999	-	1	NA	NA	NA	139	NM_001267846	60344	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.045000	0.447761	
mm_168595.1	chr1	173942178	173942378	-	1	NA	NA	NA	214	NM_001302649	15950	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Mndal	interferon activated gene 203	protein-coding	0.000000	0.358209	61(CCTTTTATATAT,+,0.00)
mm_15547.1	chr2	158409787	158409987	+	1	NA	NA	NA	34	NM_001291138	228850	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0.105000	0.676617	
mm_116153.1	chr13	29985954	29986154	-	1	NA	NA	NA	9	NM_010093	13557	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.075000	0.587065	
mm_50542.1	chr6	49046113	49046313	+	1	NA	NA	NA	9695	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.005000	0.388060	
mm_80329.1	chr9	75037650	75037850	+	1	NA	NA	NA	18	NM_021548	59046	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	0.140000	0.766169	
mm_157397.1	chrX	38420296	38420496	-	1	NA	NA	NA	36064	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.000000	0.383085	-31(CCATATATAGAA,+,0.00)
mm_153376.1	chr19	40364952	40365152	-	1	NA	NA	NA	37258	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.040000	0.592040	
mm_96435.1	chr11	67301622	67301822	+	1	NA	NA	NA	24598	NM_177369	17885	Mm.340163	NM_177369	ENSMUSG00000055775	Myh8	4832426G23Rik|AI327267|MHCp|MyHC-pn|Myhs-p|Myhsp	myosin, heavy polypeptide 8, skeletal muscle, perinatal	protein-coding	0.025000	0.527363	
mm_83631.1	chr9	49148034	49148234	-	1	NA	NA	NA	45355	NM_030709	80893	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	0.010000	0.532338	
mm_13631.1	chr2	113684990	113685190	+	1	NA	NA	NA	0	NM_001287818	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.005000	0.462687	
mm_109073.1	chr12	104345436	104345636	+	1	NA	NA	NA	7050	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.005000	0.467662	
mm_122764.1	chr14	54253665	54253865	-	1	NA	NA	NA	164	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.070000	0.582090	16(CTTTATATACTG,+,0.00)
mm_150324.1	chr19	34574100	34574300	+	1	NA	NA	NA	-9329	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.020000	0.412935	
mm_44146.1	chr5	150259805	150260005	+	1	NA	NA	NA	-25	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.030000	0.666667	
mm_130865.1	chr15	102203781	102203981	-	1	NA	NA	NA	236	NM_001289691	68744	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0.185000	0.870647	
mm_137394.1	chr17	25820564	25820764	+	1	NA	NA	NA	-2963	NM_173741	268933	Mm.95512	NM_173741	ENSMUSG00000025737	Wdr24	BC037651	WD repeat domain 24	protein-coding	0.005000	0.517413	
mm_7742.1	chr1	131021551	131021751	-	1	NA	NA	NA	1806	NM_010548	16153	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.030000	0.507463	
mm_65162.1	chr7	19673494	19673694	-	1	NA	NA	NA	326	NM_001309795	11813	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0.030000	0.577114	
mm_172612.1	chr8	19179914	19180114	-	1	NA	NA	NA	-14314	NM_183026	244332	Mm.358923	NM_183026	ENSMUSG00000046354	Defb14	BD-14	defensin beta 14	protein-coding	0.055000	0.651741	
mm_40144.1	chr5	35200230	35200430	+	1	NA	NA	NA	-78236	NM_007418	11553	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding	0.010000	0.437811	
mm_164201.1	chr15	79935522	79935722	+	1	NA	NA	NA	-2976	NM_144811	52609	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	0.005000	0.398010	
mm_28471.1	chr3	92080224	92080424	-	1	NA	NA	NA	2818	NM_008508	16939	Mm.1121	NM_008508	ENSMUSG00000043165	Lor	AI036317|S77319	loricrin	protein-coding	0.010000	0.417910	
mm_90849.1	chr10	8762260	8762460	-	1	NA	NA	NA	123710	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.010000	0.482587	
mm_113853.1	chr13	47211252	47211452	+	1	NA	NA	NA	17349	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.010000	0.398010	32(GTGTTTAAAAAG,-,0.00)
mm_42016.1	chr5	108161013	108161213	+	1	NA	NA	NA	28199	NM_028481	73254	Mm.441231	NM_028481	ENSMUSG00000056531	Ccdc18	1700021E15Rik|4932411G06Rik|NY-SAR-41	coiled-coil domain containing 18	protein-coding	0.005000	0.467662	
mm_161828.1	chr17	80206616	80206816	-	1	NA	NA	NA	589	NM_001195486	225027	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0.105000	0.597015	
mm_112158.1	chr12	113329196	113329396	-	1	NA	NA	NA	143393	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.005000	0.507463	
mm_118158.1	chr13	105291826	105292026	-	1	NA	NA	NA	1088	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.010000	0.577114	
mm_124616.1	chr15	3279500	3279700	+	1	NA	NA	NA	8623	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.015000	0.507463	
mm_49513.1	chr6	29870167	29870367	+	1	NA	NA	NA	10671	NM_001171001	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.005000	0.482587	
mm_78482.1	chr9	32696771	32696971	+	1	NA	NA	NA	829	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.025000	0.562189	
mm_23284.1	chr3	51765455	51765655	+	1	NA	NA	NA	104376	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.025000	0.472637	
mm_18214.1	chr2	49452768	49452968	-	1	NA	NA	NA	1382	NM_172663	227867	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2 (Drosophila)	protein-coding	0.030000	0.462687	
mm_170071.1	chr17	33255036	33255236	-	1	NA	NA	NA	9	NM_029952	77652	Mm.460572	NM_029952	ENSMUSG00000094441	Zfp955a	AI842447|Zfp883a	zinc finger protein 955A	protein-coding	0.040000	0.527363	
mm_126883.1	chr15	89453957	89454157	+	1	NA	NA	NA	146	NM_021921	60597	Mm.173337	NM_021921	ENSMUSG00000022619	Mapk8ip2	3230402N03Rik|AI847694|AW049958|IB2|Jip2|R75148	mitogen-activated protein kinase 8 interacting protein 2	protein-coding	0.105000	0.726368	
mm_115334.1	chr13	112479984	112480184	+	1	NA	NA	NA	16014	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.040000	0.522388	
mm_101499.1	chr11	31871526	31871726	-	1	NA	NA	NA	686	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.015000	0.502488	
mm_71037.1	chr8	33654045	33654245	+	1	NA	NA	NA	907	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.040000	0.557214	
mm_167473.1	chr8	127379010	127379210	+	1	NA	NA	NA	79458	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.015000	0.442786	
mm_120874.1	chr14	75260615	75260815	+	1	NA	NA	NA	18428	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.040000	0.502488	
mm_67334.1	chr7	79742961	79743161	-	1	NA	NA	NA	-36	NM_011068	18631	Mm.20615	NM_011068	ENSMUSG00000030545	Pex11a	PEX11alpha	peroxisomal biogenesis factor 11 alpha	protein-coding	0.090000	0.646766	
mm_166706.1	chr6	115935414	115935614	+	1	NA	NA	NA	3587	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.020000	0.527363	
mm_21704.1	chr2	164573231	164573431	-	1	NA	NA	NA	125	NM_001177401	629747	Mm.234248	NM_001177401	ENSMUSG00000074596	Spint3	Gm14315|OTTMUSG00000016288	serine peptidase inhibitor, Kunitz type, 3	protein-coding	0.015000	0.562189	
mm_7857.1	chr1	132465812	132466012	-	1	NA	NA	NA	-11455	NM_172517	213464	Mm.132868	NM_172517	ENSMUSG00000026439	Rbbp5	4933411J24Rik|C330016J05	retinoblastoma binding protein 5	protein-coding	0.000000	0.457711	
mm_46205.1	chr5	98031316	98031516	-	1	NA	NA	NA	-454	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.045000	0.542289	
mm_16338.1	chr2	174330092	174330292	+	1	NA	NA	NA	103	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.180000	0.835821	
mm_23637.1	chr3	66985620	66985820	+	1	NA	NA	NA	48	NM_025822	66880	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	0.080000	0.621891	
mm_147113.1	chr18	35722219	35722419	-	1	NA	NA	NA	-828	NM_001033141	68545	Mm.329362	NM_001033141	ENSMUSG00000073599	Ecscr	1110006O17Rik|ARIA	endothelial cell surface expressed chemotaxis and apoptosis regulator	protein-coding	0.030000	0.592040	
mm_105477.1	chr11	105936824	105937024	-	1	NA	NA	NA	7223	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.010000	0.527363	
mm_125697.1	chr15	66891386	66891586	+	1	NA	NA	NA	93	NM_018865	22402	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0.040000	0.636816	
mm_101335.1	chr11	23497935	23498135	-	1	NA	NA	NA	4	NM_001290655	268390	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	0.080000	0.736318	
mm_84885.1	chr9	79759611	79759811	-	1	NA	NA	NA	142	NM_009945	12866	Mm.152627	NM_009945	ENSMUSG00000032330	Cox7a2	COX7AL|Cox7a3|CoxVIIa-L	cytochrome c oxidase subunit VIIa 2	protein-coding	0.095000	0.601990	
mm_47911.1	chr5	134946831	134947031	-	1	NA	NA	NA	3	NM_009903	12740	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	0.040000	0.597015	
mm_120181.1	chr14	61309710	61309910	+	1	NA	NA	NA	57	NM_177337	219144	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	0.020000	0.527363	
mm_59282.1	chr7	24907601	24907801	+	1	NA	NA	NA	3355	NM_001130152	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.045000	0.656716	
mm_55430.1	chr6	65779602	65779802	-	1	NA	NA	NA	740	NM_029549	70779	Mm.263355	NM_027547	ENSMUSG00000029913	Prdm5	4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2	PR domain containing 5	protein-coding	0.005000	0.432836	
mm_82999.1	chr9	36693061	36693261	-	1	NA	NA	NA	28	NR_040741	75567	Mm.426883	NR_040741	ENSMUSG00000098304	1700027I24Rik	-	RIKEN cDNA 1700027I24 gene	ncRNA	0.005000	0.457711	
mm_166566.1	chr6	48987978	48988178	+	1	NA	NA	NA	1217	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.015000	0.562189	
mm_86237.1	chr9	120789708	120789908	-	1	NA	NA	NA	125442	NR_040742	76402	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0.015000	0.557214	
mm_85672.1	chr9	107679532	107679732	-	1	NA	NA	NA	-40	NM_008140	14685	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.020000	0.631841	
mm_35836.1	chr4	48043115	48043315	-	1	NA	NA	NA	-2090	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.155000	0.696517	
mm_29220.1	chr3	107211264	107211464	-	1	NA	NA	NA	10368	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.467662	
mm_23029.1	chr3	34649937	34650137	+	1	NA	NA	NA	42	NM_011443	20674	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0.025000	0.467662	48(GCCTCTTTAAGA,-,0.00)
mm_117575.1	chr13	86046686	86046886	-	1	NA	NA	NA	9	NM_007749	12867	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	0.075000	0.547264	
mm_103237.1	chr11	70686044	70686244	-	1	NA	NA	NA	1961	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.020000	0.517413	
mm_27409.1	chr3	51340555	51340755	-	1	NA	NA	NA	-11	NM_023502	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.135000	0.781095	
mm_133542.1	chr16	91220979	91221179	+	1	NA	NA	NA	-4471	NM_016967	50913	Mm.37289	NM_016967	ENSMUSG00000039830	Olig2	AI604895|Bhlhb1|Olg-2|Oligo2|RK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding	0.025000	0.572139	
mm_103607.1	chr11	78497612	78497812	-	1	NA	NA	NA	42	NM_001168521	237868	Mm.210332	NM_172795	ENSMUSG00000050132	Sarm1	A830091I15Rik|C78606|MyD885|Sarm	sterile alpha and HEAT/Armadillo motif containing 1	protein-coding	0.065000	0.597015	
mm_94738.1	chr11	21091286	21091486	+	1	NA	NA	NA	62	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.105000	0.716418	
mm_44340.1	chr5	17571575	17571775	-	1	NA	NA	NA	-3141	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.005000	0.432836	
mm_164065.1	chr14	118253866	118254066	+	1	NA	NA	NA	-4668	NR_105749	102465149		NR_105749	ENSMUSG00000098612	Mir6241	Gm27302|mmu-mir-6241	microRNA 6241	ncRNA	0.005000	0.502488	
mm_135997.1	chr16	75304290	75304490	-	1	NA	NA	NA	281671	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.000000	0.328358	
mm_128577.1	chr15	57892242	57892442	-	1	NA	NA	NA	76	NM_024207	67819	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.140000	0.721393	
mm_43399.1	chr5	135783287	135783487	+	1	NA	NA	NA	4738	NM_008617	17448	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	0.020000	0.542289	
mm_27269.1	chr3	39533816	39534016	-	1	NA	NA	NA	646976	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.000000	0.417910	
mm_79507.1	chr9	57428085	57428285	+	1	NA	NA	NA	11929	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.010000	0.507463	-64(TGGTTTTAAAGA,-,0.00)
mm_39733.1	chr5	29195948	29196148	+	1	NA	NA	NA	55	NR_110371	56874	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	0.080000	0.676617	
mm_109680.1	chr12	113133375	113133575	+	1	NA	NA	NA	-6761	NM_024223	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.015000	0.587065	
mm_6826.1	chr1	84200382	84200582	-	1	NA	NA	NA	18479	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.363184	
mm_50728.1	chr6	52313536	52313736	+	1	NA	NA	NA	138	NM_007966	14028	Mm.389754	NM_007966	ENSMUSG00000005503	Evx1	Evx-1	even-skipped homeobox 1	protein-coding	0.090000	0.636816	
mm_49371.1	chr6	24125568	24125768	+	1	NA	NA	NA	42424	NM_019481	55961	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0.000000	0.378109	
mm_89607.1	chr10	96012025	96012225	+	1	NA	NA	NA	71462	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.030000	0.542289	
mm_127671.1	chr15	102671837	102672037	+	1	NA	NA	NA	-71	NR_030460	751542		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	0.075000	0.651741	
mm_28144.1	chr3	87263609	87263809	-	1	NA	NA	NA	-185	NM_030707	80891	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	0.025000	0.462687	-35(ATCTATAAAAGG,-,0.00)
mm_48615.1	chr5	144736448	144736648	-	1	NA	NA	NA	25030	NM_177735	243339	Mm.126793	NM_177735	ENSMUSG00000043388	Tmem130	BC067004|C130036G08	transmembrane protein 130	protein-coding	0.010000	0.447761	
mm_105919.1	chr11	115003999	115004199	-	1	NA	NA	NA	-2219	NM_134158	140497	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0.020000	0.517413	
mm_10454.1	chr2	14282066	14282266	+	1	NA	NA	NA	21163	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.010000	0.273632	
mm_169260.1	chr13	81699739	81699939	-	1	NA	NA	NA	11174	NM_001081176	67486	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	0.020000	0.477612	16(CCTTTAATATCG,+,0.00)
mm_7092.1	chr1	88698600	88698800	-	1	NA	NA	NA	3491	NM_177305	320982	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.005000	0.467662	
mm_160918.1	chr11	83488906	83489106	+	1	NA	NA	NA	15898	NM_027427	70439	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	0.020000	0.402985	
mm_41058.1	chr5	86804288	86804488	+	1	NA	NA	NA	-102	NM_177680	231386	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.100000	0.676617	
mm_117974.1	chr13	100065922	100066122	-	1	NA	NA	NA	38048	NM_001081061	544971	Mm.288546	NM_001081061	ENSMUSG00000049658	Bdp1	AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding	0.005000	0.383085	
mm_123953.1	chr14	74689590	74689790	-	1	NA	NA	NA	-42607	NM_001285423	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.015000	0.447761	
mm_100290.1	chr11	117813619	117813819	+	1	NA	NA	NA	4052	NM_009304	20973	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0.020000	0.542289	
mm_27085.1	chr3	30013154	30013354	-	1	NA	NA	NA	-50	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.040000	0.527363	76(CCCCTTTAAAGA,-,0.00),77(CCCTTTAAAGAG,+,0.00),77(CCCTTTAAAGAG,-,0.00),79(CTTTAAAGAGAC,+,0.00)
mm_34091.1	chr4	138832906	138833106	+	1	NA	NA	NA	1130	NM_001082531	18780	Mm.4675	NM_011108	ENSMUSG00000058908	Pla2g2a	EF|Mom1|Pla2|sPLA2|sPla2-IIA	phospholipase A2, group IIA (platelets, synovial fluid)	protein-coding	0.010000	0.542289	
mm_53108.1	chr6	125083079	125083279	+	1	NA	NA	NA	11902	NM_001163268	381810	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0.015000	0.527363	78(CCTTATATAGTA,+,0.00)
mm_144757.1	chr18	35771263	35771463	+	1	NA	NA	NA	-196	NM_019912	56550	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0.105000	0.701493	
mm_139444.1	chr17	55445392	55445592	+	1	NA	NA	NA	110	NM_001347403	240119	Mm.311687	NM_172829	ENSMUSG00000024172	St6gal2	C230064G14Rik|St6galII|mKIAA1877	beta galactoside alpha 2,6 sialyltransferase 2	protein-coding	0.055000	0.646766	
mm_78464.1	chr9	32508317	32508517	+	1	NA	NA	NA	33035	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.020000	0.497512	
mm_50278.1	chr6	47044507	47044707	+	1	NA	NA	NA	-199789	NM_025771	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.035000	0.482587	
mm_168375.1	chr11	21370729	21370929	-	1	NA	NA	NA	-200	NM_139297	216558	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0.100000	0.786070	
mm_23335.1	chr3	54383319	54383519	+	1	NA	NA	NA	22312	NM_015784	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0.025000	0.432836	
mm_110778.1	chr12	70968594	70968794	-	1	NA	NA	NA	-5929	NM_001310595	19167	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0.055000	0.562189	
mm_42313.1	chr5	114865414	114865614	+	1	NA	NA	NA	11800	NM_026263	67593	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	0.045000	0.567164	
mm_14840.1	chr2	147373942	147374142	+	1	NA	NA	NA	9048	NM_008780	18503	Mm.315502	NM_008780	ENSMUSG00000037034	Pax1	Pax-1|hbs|hunchback|un|undulated|wt	paired box 1	protein-coding	0.030000	0.477612	
mm_73261.1	chr8	104340640	104340840	+	1	NA	NA	NA	146	NM_024217	68119	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.080000	0.661692	
mm_30929.1	chr4	32964693	32964893	+	1	NA	NA	NA	-13967	NM_001012451	140577	Mm.214766	NM_080471	ENSMUSG00000040183	Ankrd6	-	ankyrin repeat domain 6	protein-coding	0.050000	0.522388	
mm_156433.1	chrX	141475506	141475706	+	1	NA	NA	NA	187	NM_001163155	12830	Mm.286892	NM_007736	ENSMUSG00000031274	Col4a5	-	collagen, type IV, alpha 5	protein-coding	0.020000	0.482587	
mm_88341.1	chr10	75589372	75589572	+	1	NA	NA	NA	91	NM_011820	23887	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	0.015000	0.562189	
mm_152279.1	chr19	8839056	8839256	-	1	NA	NA	NA	90	NM_010316	14704	Mm.329700	NM_010316	ENSMUSG00000071658	Gng3	-	guanine nucleotide binding protein (G protein), gamma 3	protein-coding	0.015000	0.522388	
mm_48246.1	chr5	137786325	137786525	-	1	NA	NA	NA	276	NM_144913	231803	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0.130000	0.701493	
mm_144231.1	chr18	10326027	10326227	+	1	NA	NA	NA	948	NM_001083628	381157	Mm.261535	NM_001083628	ENSMUSG00000042942	Greb1l	mKIAA4095	growth regulation by estrogen in breast cancer-like	protein-coding	0.000000	0.363184	
mm_67151.1	chr7	73519441	73519641	-	1	NA	NA	NA	22205	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.035000	0.507463	29(GCCTCTAAGAAG,-,0.00)
mm_20511.1	chr2	130638233	130638433	-	1	NA	NA	NA	4511	NM_197945	241638	Mm.440130	NM_197945	ENSMUSG00000037703	Lzts3	Prosapip1	leucine zipper, putative tumor suppressor family member 3	protein-coding	0.020000	0.611940	
mm_126151.1	chr15	78406687	78406887	+	1	NA	NA	NA	-14	NM_001162492	246221	Mm.294215	NM_138670	ENSMUSG00000071711	Mpst	Mst	mercaptopyruvate sulfurtransferase	protein-coding	0.050000	0.631841	
mm_156402.1	chrX	139953753	139953953	+	1	NA	NA	NA	44742	NM_153586	237073	Mm.256670	NM_153586	ENSMUSG00000031433	Rbm41	BB131279|D330023I21Rik	RNA binding motif protein 41	protein-coding	0.030000	0.522388	
mm_82636.1	chr9	21963500	21963700	-	1	NA	NA	NA	-24	NM_010149	13857	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	0.010000	0.621891	
mm_30957.1	chr4	33350616	33350816	+	1	NA	NA	NA	40405	NM_001305273	24018	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.000000	0.333333	
mm_123369.1	chr14	63177747	63177947	-	1	NA	NA	NA	1731	NM_010191	14137	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	0.110000	0.721393	
mm_122225.1	chr14	32685363	32685563	-	1	NA	NA	NA	-191	NM_001195097	100504518	Mm.318319	NM_001195097	ENSMUSG00000071540	3425401B19Rik	-	RIKEN cDNA 3425401B19 gene	protein-coding	0.025000	0.412935	
mm_94597.1	chr11	11809707	11809907	+	1	NA	NA	NA	-845	NM_001163360	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.010000	0.452736	
mm_6700.1	chr1	80758571	80758771	-	1	NA	NA	NA	-118	NM_175291	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.125000	0.711443	
mm_47405.1	chr5	123132210	123132410	-	1	NA	NA	NA	319	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.095000	0.681592	
mm_19048.1	chr2	77184386	77184586	-	1	NA	NA	NA	-13851	NM_001025576	545428	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI|ENSMUSG00000075261	coiled-coil domain containing 141	protein-coding	0.020000	0.422886	
mm_77067.1	chr8	109962005	109962205	-	1	NA	NA	NA	100	NM_212447	73608	Mm.86833	NM_028584	ENSMUSG00000001672	Marveld3	1810006A16Rik|AI642133|Marvd3|Mrvldc3	MARVEL (membrane-associating) domain containing 3	protein-coding	0.110000	0.656716	
mm_103000.1	chr11	69687218	69687418	-	1	NA	NA	NA	-1764	NM_023517	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.015000	0.542289	
mm_21216.1	chr2	155818781	155818981	-	1	NA	NA	NA	322	NR_015528	613262	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	0.045000	0.597015	
mm_139110.1	chr17	47369092	47369292	+	1	NA	NA	NA	-5	NM_183086	64657	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	0.065000	0.552239	
mm_35448.1	chr4	40261586	40261786	-	1	NA	NA	NA	-7893	NR_045265	100504309	Mm.392019	NR_045265		Toporsos	2010003O02Rik	topoisomerase I binding, arginine/serine-rich, opposite strand	ncRNA	0.025000	0.452736	
mm_100505.1	chr11	120491808	120492008	+	1	NA	NA	NA	71	NM_013770	27376	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0.110000	0.721393	
mm_103463.1	chr11	76422162	76422362	-	1	NA	NA	NA	15119	NM_019818	56322	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	0.005000	0.597015	
mm_91477.1	chr10	34208208	34208408	-	1	NA	NA	NA	-757	NM_172508	212898	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.020000	0.383085	
mm_162639.1	chr1	191397121	191397321	-	1	NA	NA	NA	-180	NM_144880	226849	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0.080000	0.681592	
mm_124392.1	chr14	111513742	111513942	-	1	NA	NA	NA	-161273	NM_198865	75409	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0.005000	0.417910	
mm_96859.1	chr11	70092549	70092749	+	1	NA	NA	NA	5	NM_001313927	11890	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	0.010000	0.557214	
mm_11637.1	chr2	34826189	34826389	+	1	NA	NA	NA	-54	NM_001164772	30050	Mm.4465	NM_013890	ENSMUSG00000035949	Fbxw2	2700071L08Rik|FBW2|Fwd2|MD6	F-box and WD-40 domain protein 2	protein-coding	0.090000	0.636816	
mm_93064.1	chr10	88826705	88826905	-	1	NA	NA	NA	9	NM_175158	70683	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	0.075000	0.587065	
mm_65012.1	chr7	17090405	17090605	-	1	NA	NA	NA	16465	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.005000	0.442786	
mm_42564.1	chr5	117142067	117142267	+	1	NA	NA	NA	8579	NM_183306	330177	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.010000	0.437811	-14(CTCTTTAGGGCC,+,0.00)
mm_151751.1	chr19	5093157	5093357	-	1	NA	NA	NA	4719	NM_026553	68090	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	0.025000	0.626866	
mm_144769.1	chr18	35780689	35780889	+	1	NA	NA	NA	9230	NM_019912	56550	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0.000000	0.328358	
mm_29112.1	chr3	104864905	104865105	-	1	NA	NA	NA	499	NM_153091	229681	Mm.206379	NM_153091	ENSMUSG00000045576	St7l	St7r	suppression of tumorigenicity 7-like	protein-coding	0.070000	0.671642	
mm_34753.1	chr4	152325754	152325954	+	1	NA	NA	NA	128	NR_102291	19934	Mm.307846	NM_009079	ENSMUSG00000028936	Rpl22	2700038K18Rik	ribosomal protein L22	protein-coding	0.095000	0.676617	
mm_160099.1	chr7	18532093	18532293	-	1	NA	NA	NA	34	NM_054060	114868	Mm.389809	NM_054060	ENSMUSG00000070798	Psg25	cea13	pregnancy-specific glycoprotein 25	protein-coding	0.005000	0.462687	
mm_16113.1	chr2	169699300	169699500	+	1	NA	NA	NA	65754	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.005000	0.502488	
mm_112336.1	chr12	116000411	116000611	-	1	NA	NA	NA	-47213	NM_001004066	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0.000000	0.462687	
mm_150211.1	chr19	32817875	32818075	+	1	NA	NA	NA	60398	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.020000	0.398010	
mm_130568.1	chr15	99457628	99457828	-	1	NA	NA	NA	20	NM_001001884	380969	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	0.060000	0.656716	-36(GCCCCTTTAAAG,-,0.00),-35(CCCCTTTAAAGC,-,0.00),-34(CCCTTTAAAGCC,+,0.00),-33(CCTTTAAAGCCT,+,0.00)
mm_65578.1	chr7	27196056	27196256	-	1	NA	NA	NA	115	NM_015782	53607	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0.070000	0.597015	
mm_85341.1	chr9	103197505	103197705	-	1	NA	NA	NA	4460	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.020000	0.507463	
mm_80033.1	chr9	68803007	68803207	+	1	NA	NA	NA	37761	NR_033299	320440	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.000000	0.268657	-73(TACTATTAAAAC,-,0.00)
mm_35590.1	chr4	43000368	43000568	-	1	NA	NA	NA	39	NM_009503	269523	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	0.090000	0.582090	
mm_104978.1	chr11	100247546	100247746	-	1	NA	NA	NA	1256	NM_001313958	16666	Mm.422799	NM_008470	ENSMUSG00000053797	Krt16	AI324768|CK-16|K16|Krt1-16	keratin 16	protein-coding	0.020000	0.537313	
mm_83502.1	chr9	45955104	45955304	-	1	NA	NA	NA	45	NM_172257	214597	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	0.145000	0.751244	-10(CGCCCTTAAAGG,-,0.00),-9(GCCCTTAAAGGG,-,0.00),-8(CCCTTAAAGGGC,+,0.00),-7(CCTTAAAGGGCC,+,0.00)
mm_116408.1	chr13	41425273	41425473	-	1	NA	NA	NA	61987	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.000000	0.437811	
mm_3584.1	chr1	151344353	151344553	+	1	NA	NA	NA	-45	NM_001039512	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.140000	0.726368	
mm_121575.1	chr14	122912900	122913100	+	1	NA	NA	NA	165	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.105000	0.721393	
mm_123975.1	chr14	75176492	75176692	-	1	NA	NA	NA	40167	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.005000	0.502488	
mm_136267.1	chr16	91043982	91044182	-	1	NA	NA	NA	297	NM_026110	67367	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.130000	0.766169	
mm_98599.1	chr11	95825131	95825331	+	1	NA	NA	NA	731	NM_153104	237928	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.025000	0.582090	
mm_166323.1	chr5	111630360	111630560	+	1	NA	NA	NA	48899	NR_015546	330164	Mm.193276	NM_177875	ENSMUSG00000052848	C130026L21Rik	-	RIKEN cDNA C130026L21 gene	ncRNA	0.010000	0.517413	
mm_146557.1	chr18	6225253	6225453	-	1	NA	NA	NA	16171	NM_008448	16573	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.005000	0.348259	
mm_120014.1	chr14	55745785	55745985	+	1	NA	NA	NA	192	NM_026403	67842	Mm.180338	NM_026403	ENSMUSG00000019297	Nop9	2610027L16Rik	NOP9 nucleolar protein	protein-coding	0.155000	0.746269	
mm_115235.1	chr13	109903297	109903497	+	1	NA	NA	NA	-412	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.080000	0.691542	
mm_100066.1	chr11	115394539	115394739	+	1	NA	NA	NA	-9113	NM_001347645	68572	Mm.271062	NM_026729	ENSMUSG00000018858	Mrpl58	1110001A02Rik|1110002E03Rik|Ict1|MRP-L58	mitochondrial ribosomal protein L58	protein-coding	0.000000	0.462687	
mm_144313.1	chr18	12643319	12643519	+	1	NA	NA	NA	-114	NM_028341	72747	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.050000	0.631841	
mm_38791.1	chr4	148130544	148130744	-	1	NA	NA	NA	54	NM_027426	70433	Mm.275288	NM_027426	ENSMUSG00000029005	Draxin	2610109H07Rik|neucrin	dorsal inhibitory axon guidance protein	protein-coding	0.110000	0.766169	
mm_90312.1	chr10	127041852	127042052	+	1	NA	NA	NA	20	NM_010792	17299	Mm.251593	NM_010792	ENSMUSG00000006732	Mettl1	2810012D02Rik	methyltransferase like 1	protein-coding	0.110000	0.671642	-61(CTCTTTAAAAGG,-,0.00),-60(TCTTTAAAAGGC,+,0.00),-59(CTTTAAAAGGCG,+,0.00)
mm_144932.1	chr18	37720287	37720487	+	1	NA	NA	NA	-167	NM_033576	93701	Mm.247203	NM_033576	ENSMUSG00000103585	Pcdhgb4	-	protocadherin gamma subfamily B, 4	protein-coding	0.050000	0.512438	
mm_170246.1	chr17	93321606	93321806	+	1	NA	NA	NA	122538	NM_009625	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.015000	0.477612	
mm_151896.1	chr19	5798906	5799106	-	1	NA	NA	NA	-3025	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.025000	0.407960	
mm_150954.1	chr19	46356820	46357020	+	1	NA	NA	NA	40	NM_029186	75146	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	0.080000	0.691542	
mm_89548.1	chr10	94688530	94688730	+	1	NA	NA	NA	-17	NR_015524	67723	Mm.116284	NR_015524	ENSMUSG00000097164	Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	0.165000	0.761194	
mm_158428.1	chrX	139834641	139834841	-	1	NA	NA	NA	33933	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.035000	0.447761	
mm_155329.1	chrX	65047577	65047777	+	1	NA	NA	NA	33	NM_027302	70062	Mm.45791	NM_027302	ENSMUSG00000031181	Ctag2	1700030B21Rik	cancer/testis antigen 2	protein-coding	0.010000	0.507463	
mm_68999.1	chr7	126676334	126676534	-	1	NA	NA	NA	-77	NM_133670	20887	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|Stp|Stp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	0.000000	0.487562	
mm_143440.1	chr17	70853080	70853280	-	1	NA	NA	NA	352	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.095000	0.626866	
mm_147364.1	chr18	43393188	43393388	-	1	NA	NA	NA	89	NM_009468	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.050000	0.562189	
mm_129761.1	chr15	82404440	82404640	-	1	NA	NA	NA	2654	NM_010005	13101	Mm.174372	NM_010005	ENSMUSG00000094806	Cyp2d10	AI303445|Cyp2d|P450-2D	cytochrome P450, family 2, subfamily d, polypeptide 10	protein-coding	0.010000	0.502488	
mm_172271.1	chr6	81333547	81333747	+	1	NA	NA	NA	562016	NR_106091	102465711		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0.000000	0.368159	
mm_12196.1	chr2	65668661	65668861	+	1	NA	NA	NA	75	NM_001346680	110876	Mm.220329	NM_001099298	ENSMUSG00000075318	Scn2a	6430408L10|A230052E19Rik|Nav1.2|Scn2a1	sodium channel, voltage-gated, type II, alpha	protein-coding	0.005000	0.378109	-70(GGTCTTTAAAGG,-,0.00),-69(GTCTTTAAAGGA,-,0.00),-68(TCTTTAAAGGAG,+,0.00),-30(TTTTTTAAAGCC,+,0.00)
mm_164197.1	chr15	79414744	79414944	+	1	NA	NA	NA	-11541	NM_172608	223693	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	0.010000	0.517413	
mm_146182.1	chr18	75488330	75488530	+	1	NA	NA	NA	-26215	NR_045879	100038353	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	ENSMUSG00000073534	predicted gene 10532	ncRNA	0.005000	0.522388	
mm_49389.1	chr6	24863795	24863995	+	1	NA	NA	NA	5898	NM_028957	74468	Mm.251601	NM_028957	ENSMUSG00000029678	Hyal5	4933439A12Rik	hyaluronoglucosaminidase 5	protein-coding	0.000000	0.368159	
mm_122413.1	chr14	41030890	41031090	-	1	NA	NA	NA	-17157	NM_001316737	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.025000	0.333333	
mm_103395.1	chr11	75432433	75432633	-	1	NA	NA	NA	6968	NM_008878	18816	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	0.025000	0.562189	
mm_78159.1	chr9	21027857	21028057	+	1	NA	NA	NA	-1416	NM_023892	78369	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.005000	0.532338	
mm_154316.1	chrM	2038	2238	+	1	NA	NA	NA	NA	NA									0.015000	0.328358	
mm_26645.1	chr3	153944759	153944959	+	1	NA	NA	NA	-216	NM_007382	11364	Mm.10530	NM_007382	ENSMUSG00000062908	Acadm	AU018656|MCAD	acyl-Coenzyme A dehydrogenase, medium chain	protein-coding	0.060000	0.641791	
mm_124897.1	chr15	10470601	10470801	+	1	NA	NA	NA	-185	NM_030046	78244	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	0.065000	0.671642	59(GGCTTGATAAGG,-,0.00)
mm_80631.1	chr9	89211079	89211279	+	1	NA	NA	NA	-11	NM_026829	107885	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.070000	0.656716	
mm_59368.1	chr7	25688039	25688239	+	1	NA	NA	NA	1137	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.105000	0.686567	
mm_157027.1	chrX	7899101	7899301	-	1	NA	NA	NA	68	NM_001252529	54633	Mm.14616	NM_019478	ENSMUSG00000031157	Pqbp1	PQBP-1|Sfc2|npw38	polyglutamine binding protein 1	protein-coding	0.050000	0.527363	
mm_127831.1	chr15	6580987	6581187	-	1	NA	NA	NA	1240	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.010000	0.452736	
mm_62304.1	chr7	100176607	100176807	+	1	NA	NA	NA	37	NM_001190869	57442	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	0.005000	0.442786	
mm_96147.1	chr11	61065707	61065907	+	1	NA	NA	NA	3	NM_010603	16515	Mm.4970	NM_010603	ENSMUSG00000042529	Kcnj12	IRK-2|IRK2|Kir2.2|MB-IRK2	potassium inwardly-rectifying channel, subfamily J, member 12	protein-coding	0.010000	0.582090	
mm_57208.1	chr6	122852758	122852958	-	1	NA	NA	NA	3299	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.005000	0.477612	
mm_125816.1	chr15	74954093	74954293	+	1	NA	NA	NA	-858	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.005000	0.537313	
mm_123706.1	chr14	69805351	69805551	-	1	NA	NA	NA	94	NM_153514	246710	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0.165000	0.721393	-32(GCGTCTTAAGGC,-,0.00)
mm_102195.1	chr11	54353368	54353568	-	1	NA	NA	NA	-17184	NM_029105	74847	Mm.486538	NM_029105	ENSMUSG00000020332	Meikin	4930404A10Rik	meiotic kinetochore factor	protein-coding	0.000000	0.492537	81(GCCCATAAAAGT,-,0.00)
mm_119552.1	chr14	48654739	48654939	+	1	NA	NA	NA	8033	NM_144841	18424	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	0.055000	0.552239	
mm_133196.1	chr16	72982845	72983045	+	1	NA	NA	NA	319796	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.020000	0.393035	
mm_99058.1	chr11	99052225	99052425	+	1	NA	NA	NA	11065	NM_010517	16010	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.015000	0.537313	
mm_36130.1	chr4	59254180	59254380	-	1	NA	NA	NA	-5771	NR_105031	101055769	Mm.421401	NR_105031		Gm12596	OTTMUSG00000007649	predicted gene 12596	ncRNA	0.015000	0.452736	-31(GTCTTTTAAAAG,-,0.00),-30(TCTTTTAAAAGC,+,0.00),-30(TCTTTTAAAAGC,-,0.00),-29(CTTTTAAAAGCC,+,0.00)
mm_142950.1	chr17	56109685	56109885	-	1	NA	NA	NA	17	NM_020568	57435	Mm.12966	NM_020568	ENSMUSG00000002831	Plin4	S3-12|mKIAA1881	perilipin 4	protein-coding	0.025000	0.671642	-34(GACCCTATAAGG,-,0.00),-32(CCCTATAAGGCT,+,0.00)
mm_158416.1	chrX	137119712	137119912	-	1	NA	NA	NA	514	NM_007957	13984	Mm.8017	NM_007957	ENSMUSG00000023443	Esx1	Spx1	extraembryonic, spermatogenesis, homeobox 1	protein-coding	0.090000	0.527363	
mm_75704.1	chr8	68887406	68887606	-	1	NA	NA	NA	6951	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.020000	0.467662	
mm_137270.1	chr17	24698260	24698460	+	1	NA	NA	NA	2126	NM_027988	71893	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	0.025000	0.552239	
mm_47219.1	chr5	121156981	121157181	-	1	NA	NA	NA	34316	NM_001109992	19247	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0.005000	0.407960	
mm_34117.1	chr4	139207356	139207556	+	1	NA	NA	NA	13345	NM_001271405	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.010000	0.437811	-29(TTGTTTTAAAGG,-,0.00)
mm_40212.1	chr5	37047376	37047576	+	1	NA	NA	NA	-3381	NM_178394	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0.010000	0.601990	
mm_118068.1	chr13	102905927	102906127	-	1	NA	NA	NA	145772	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.015000	0.457711	
mm_148627.1	chr19	5447796	5447996	+	1	NA	NA	NA	198	NM_010235	14283	Mm.6215	NM_010235	ENSMUSG00000024912	Fosl1	AW538199|Fra1|fra-1	fos-like antigen 1	protein-coding	0.085000	0.621891	
mm_129983.1	chr15	86033975	86034175	-	1	NA	NA	NA	-298	NM_009886	12614	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	0.100000	0.716418	
mm_92440.1	chr10	77418118	77418318	-	1	NA	NA	NA	55	NM_130895	110532	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0.140000	0.800995	
mm_15142.1	chr2	153974750	153974950	+	1	NA	NA	NA	-95	NM_001080811	545477	Mm.379973	NM_001080811	ENSMUSG00000078998	Bpifa6	EG545477|Gm5840|Splunc6	BPI fold containing family A, member 6	protein-coding	0.010000	0.532338	
mm_36050.1	chr4	57300695	57300895	-	1	NA	NA	NA	1042	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.050000	0.646766	-12(GGCCCTATAGGC,-,0.00)
mm_55443.1	chr6	67186485	67186685	-	1	NA	NA	NA	-80394	NM_001113564	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.005000	0.497512	
mm_74846.1	chr8	24576233	24576433	-	1	NA	NA	NA	0	NM_145949	209176	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0.025000	0.512438	
mm_111795.1	chr12	104865057	104865257	-	1	NA	NA	NA	-81	NR_104435	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.135000	0.756219	
mm_88585.1	chr10	79710161	79710361	+	1	NA	NA	NA	5903	NM_009768	12215	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	0.030000	0.582090	
mm_168336.1	chr1	111881225	111881425	-	1	NA	NA	NA	-16407	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0.020000	0.373134	
mm_61783.1	chr7	83755834	83756034	+	1	NA	NA	NA	-20444	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.070000	0.507463	62(AGCCTTTAAAAG,-,0.00),63(GCCTTTAAAAGA,-,0.00),64(CCTTTAAAAGAT,+,0.00)
mm_87587.1	chr10	57486284	57486484	+	1	NA	NA	NA	-1	NM_008297	15500	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	0.180000	0.766169	
mm_80957.1	chr9	103008388	103008588	+	1	NA	NA	NA	-1	NM_033314	24059	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	0.070000	0.611940	
mm_116357.1	chr13	40725729	40725929	-	1	NA	NA	NA	-1979	NR_125899	102633805		NR_125899	ENSMUSG00000097752	Gm26688	Tfap2a-as1	predicted gene, 26688	ncRNA	0.000000	0.487562	
mm_60237.1	chr7	43712416	43712616	+	1	NA	NA	NA	-51	NM_001039042	626834	Mm.389891	NM_001039042	ENSMUSG00000054046	Klk13	Egfbp-2|mGk-13	kallikrein related-peptidase 13	protein-coding	0.005000	0.587065	
mm_85522.1	chr9	106452954	106453154	-	1	NA	NA	NA	-784	NM_021567	59092	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	0.010000	0.611940	
mm_37919.1	chr4	132785374	132785574	-	1	NA	NA	NA	10890	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.020000	0.616915	
mm_75263.1	chr8	40634637	40634837	-	1	NA	NA	NA	55	NM_001040699	54384	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.140000	0.776119	
mm_30286.1	chr3	148989284	148989484	-	1	NA	NA	NA	-34749	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.100000	0.651741	
mm_19432.1	chr2	91950224	91950424	-	1	NA	NA	NA	24	NM_001166597	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.030000	0.601990	
mm_32266.1	chr4	102605335	102605535	+	1	NA	NA	NA	15592	NM_001177981	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.015000	0.542289	
mm_109502.1	chr12	111451999	111452199	+	1	NA	NA	NA	9438	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.000000	0.482587	
mm_39032.1	chr4	152291557	152291757	-	1	NA	NA	NA	5	NM_008237	15207	Mm.3516	NM_008237	ENSMUSG00000028946	Hes3	Hes-3|bHLHb43	hairy and enhancer of split 3 (Drosophila)	protein-coding	0.020000	0.517413	
mm_142033.1	chr17	35236413	35236613	-	1	NA	NA	NA	-83	NM_023179	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.035000	0.611940	
mm_22110.1	chr2	170131070	170131270	-	1	NA	NA	NA	50	NM_001033299	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.160000	0.810945	
mm_67666.1	chr7	86775858	86776058	-	1	NA	NA	NA	-94	NM_001159706	53320	Mm.269137	NM_016770	ENSMUSG00000001773	Folh1	GCP2|mopsm	folate hydrolase 1	protein-coding	0.010000	0.427861	
mm_142920.1	chr17	53823694	53823894	-	1	NA	NA	NA	22164	NM_026935	69083	Mm.19320	NM_026935	ENSMUSG00000023122	Sult1c2	1810008N17Rik|ST1C1|ST1C2|Sult1c1	sulfotransferase family, cytosolic, 1C, member 2	protein-coding	0.000000	0.462687	
mm_64166.1	chr7	141401775	141401975	+	1	NA	NA	NA	9715	NM_011528	21351	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0.030000	0.567164	
mm_39141.1	chr4	155328568	155328768	-	1	NA	NA	NA	17121	NM_001039079	18762	Mm.28561	NM_008860	ENSMUSG00000029053	Prkcz	AI098070|C80388|Pkcz|R74924|aPKCzeta|nPKC-zeta|zetaPKC	protein kinase C, zeta	protein-coding	0.025000	0.507463	
mm_167418.1	chr8	110738468	110738668	+	1	NA	NA	NA	12842	NM_001310591	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.070000	0.701493	
mm_70891.1	chr8	25573968	25574168	+	1	NA	NA	NA	-17985	NR_110510	102633315	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	OTTMUSG00000031030	predicted gene 16159	ncRNA	0.020000	0.611940	
mm_49125.1	chr6	8527164	8527364	+	1	NA	NA	NA	7206	NM_001286729	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.005000	0.363184	
mm_6564.1	chr1	75142292	75142492	-	1	NA	NA	NA	-24	NM_026977	69171	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0.045000	0.517413	
mm_108804.1	chr12	91757171	91757371	+	1	NA	NA	NA	29165	NM_175367	108800	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.010000	0.402985	
mm_104742.1	chr11	98438642	98438842	-	1	NA	NA	NA	246	NM_025559	103742	Mm.259614	NM_025559	ENSMUSG00000002580	Mien1	1810046J19Rik|AI463380|Rdx12	migration and invasion enhancer 1	protein-coding	0.065000	0.631841	
mm_3413.1	chr1	144317793	144317993	+	1	NA	NA	NA	-68789	NM_015811	50778	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.005000	0.398010	
mm_49399.1	chr6	28426149	28426349	+	1	NA	NA	NA	-1652	NM_019569	56223	Mm.31708	NM_019569	ENSMUSG00000029707	Fscn3	-	fascin actin-bundling protein 3	protein-coding	0.040000	0.666667	
mm_83802.1	chr9	53247957	53248157	-	1	NA	NA	NA	55	NM_029936	77591	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	0.095000	0.686567	
mm_16698.1	chr2	6885162	6885362	-	1	NA	NA	NA	-266	NM_001160293	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.000000	0.402985	
mm_14992.1	chr2	152293774	152293974	+	1	NA	NA	NA	2	NM_024196	67231	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	0.125000	0.751244	
mm_126171.1	chr15	78561324	78561524	+	1	NA	NA	NA	11359	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.030000	0.606965	
mm_138111.1	chr17	34122749	34122949	+	1	NA	NA	NA	17	NM_010386	14998	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	0.080000	0.731343	
mm_97260.1	chr11	75759268	75759468	+	1	NA	NA	NA	26481	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.025000	0.482587	
mm_135800.1	chr16	57231285	57231485	-	1	NA	NA	NA	81	NM_026254	67581	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.055000	0.537313	
mm_56954.1	chr6	120002218	120002418	-	1	NA	NA	NA	31993	NR_030487	735290		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	0.010000	0.343284	-55(CCTTTTAGGATC,+,0.00)
mm_34833.1	chr4	155249885	155250085	+	1	NA	NA	NA	19	NR_033802	67513	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	0.105000	0.726368	
mm_149248.1	chr19	10388976	10389176	+	1	NA	NA	NA	-14	NM_018801	54525	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0.105000	0.656716	
mm_76872.1	chr8	105549531	105549731	-	1	NA	NA	NA	16409	NM_013477	11972	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0.000000	0.517413	
mm_25604.1	chr3	117575134	117575334	+	1	NA	NA	NA	7	NM_001305451	75769	Mm.72187	NM_029425	ENSMUSG00000033342	Plppr5	4833424O15Rik|Lppr5|PRG-5|Pap2d	phospholipid phosphatase related 5	protein-coding	0.055000	0.616915	
mm_168060.1	chr10	100212505	100212705	+	1	NA	NA	NA	-123071	NM_001166636	100043247	Mm.478257	NM_001166636	ENSMUSG00000096640	Gm4312	-	predicted gene 4312	protein-coding	0.020000	0.497512	
mm_86596.1	chr10	13130516	13130716	+	1	NA	NA	NA	39771	NR_131912	338438		NR_131912		Hymai	-	hydatidiform mole associated and imprinted transcript	ncRNA	0.005000	0.358209	
mm_122584.1	chr14	50851049	50851249	-	1	NA	NA	NA	19405	NM_009351	21745	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	0.000000	0.442786	
mm_168029.1	chrY	90738380	90738580	+	1	NA	NA	NA	16570	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.467662	
mm_164508.1	chr16	93730030	93730230	+	1	NA	NA	NA	18223	NM_027293	70028	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0.045000	0.542289	
mm_111539.1	chr12	100887831	100888031	-	1	NA	NA	NA	11593	NM_001177674	238377	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.020000	0.587065	
mm_164258.1	chr15	100084130	100084330	+	1	NA	NA	NA	45566	NM_001159361	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.010000	0.472637	
mm_32863.1	chr4	118426797	118426997	+	1	NA	NA	NA	-1196	NM_001039175	54325	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	0.000000	0.358209	
mm_81191.1	chr9	107551330	107551530	+	1	NA	NA	NA	-125	NM_001243748	56289	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0.090000	0.681592	
mm_169112.1	chr13	44869901	44870101	-	1	NA	NA	NA	132095	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.105000	0.621891	
mm_152349.1	chr19	9984846	9985046	-	1	NA	NA	NA	2300	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.020000	0.502488	
mm_161931.1	chr18	80986571	80986771	-	1	NA	NA	NA	-93	NM_178280	20689	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	sal-like 3 (Drosophila)	protein-coding	0.155000	0.781095	
mm_42853.1	chr5	122210001	122210201	+	1	NA	NA	NA	-186	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.040000	0.656716	
mm_128629.1	chr15	59075876	59076076	-	1	NA	NA	NA	6050	NM_001146180	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.010000	0.432836	
mm_128834.1	chr15	68337330	68337530	-	1	NA	NA	NA	80	NR_029534	387226		NR_029534	ENSMUSG00000065476	Mir30b	Mirn30b|mir-30b|mmu-mir-30b	microRNA 30b	ncRNA	0.010000	0.412935	
mm_119294.1	chr14	34674079	34674279	+	1	NA	NA	NA	251	NM_001301330	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.120000	0.756219	
mm_38003.1	chr4	133720706	133720906	-	1	NA	NA	NA	-3698	NR_106086	102465707		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	0.015000	0.606965	
mm_23859.1	chr3	83011255	83011455	+	1	NA	NA	NA	3631	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.010000	0.417910	-68(TTCTTTATAAGC,-,0.00),-66(CTTTATAAGCAC,+,0.00)
mm_80772.1	chr9	95560341	95560541	+	1	NA	NA	NA	624	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.080000	0.636816	
mm_160695.1	chr10	31414101	31414301	-	1	NA	NA	NA	234	NM_011509	100041294	Mm.7821	NM_011509		Supt4b	Gm3258|Supt4h1b|Supt4h2	suppressor of Ty 4B	protein-coding	0.040000	0.437811	
mm_72215.1	chr8	72646655	72646855	+	1	NA	NA	NA	44	NM_176940	319555	Mm.212927	NM_176940	ENSMUSG00000048148	Nwd1	A230063L24Rik	NACHT and WD repeat domain containing 1	protein-coding	0.025000	0.537313	
mm_35765.1	chr4	46138599	46138799	-	1	NA	NA	NA	188	NM_001033201	433702	Mm.389536	NM_001033201	ENSMUSG00000028330	Ncbp1	AU014645|AW538051|CBP80	nuclear cap binding protein subunit 1	protein-coding	0.150000	0.746269	
mm_165124.1	chr2	5063522	5063722	+	1	NA	NA	NA	316	NM_181848	71648	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0.040000	0.587065	
mm_120494.1	chr14	65980816	65981016	+	1	NA	NA	NA	12433	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.020000	0.532338	
mm_16935.1	chr2	14055893	14056093	-	1	NA	NA	NA	42	NM_001012396	30963	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	0.180000	0.835821	
mm_105583.1	chr11	106714966	106715166	-	1	NA	NA	NA	215	NM_001305158	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.020000	0.527363	
mm_17297.1	chr2	26294430	26294630	-	1	NA	NA	NA	27	NM_177841	329366	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding	0.000000	0.512438	
mm_58572.1	chr7	4793079	4793279	+	1	NA	NA	NA	214	NM_009081	19943	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	0.065000	0.611940	
mm_36038.1	chr4	57241031	57241231	-	1	NA	NA	NA	60706	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.025000	0.572139	48(TTATTTAAAAGC,-,0.00)
mm_28861.1	chr3	97242431	97242631	-	1	NA	NA	NA	-15167	NM_029933	77578	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.005000	0.388060	-87(TCTTAAAAACCC,+,0.00)
mm_69751.1	chr7	140955909	140956109	-	1	NA	NA	NA	-48	NM_030694	80876	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.020000	0.517413	
mm_1142.1	chr1	60705191	60705391	+	1	NA	NA	NA	-41097	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.005000	0.422886	
mm_78935.1	chr9	45117745	45117945	+	1	NA	NA	NA	-31	NM_001014761	72821	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	0.010000	0.402985	
mm_135879.1	chr16	63863968	63864168	-	1	NA	NA	NA	89	NM_010140	13837	Mm.1977	NM_010140	ENSMUSG00000052504	Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding	0.050000	0.582090	
mm_125789.1	chr15	74721149	74721349	+	1	NA	NA	NA	15	NM_198607	223626	Mm.268603	NM_198607	ENSMUSG00000056665	Them6	4930572J05Rik	thioesterase superfamily member 6	protein-coding	0.080000	0.681592	
mm_95326.1	chr11	46727687	46727887	+	1	NA	NA	NA	-12436	NM_001166632	171283	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	0.025000	0.517413	
mm_34792.1	chr4	154506814	154507014	+	1	NA	NA	NA	129453	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	0.045000	0.577114	-76(GCTTAACTAGCC,+,0.00)
mm_125965.1	chr15	76274037	76274237	+	1	NA	NA	NA	-4298	NR_045747	100038659	Mm.448549	NR_045747		Mirt2	ENSMUSG00000075583|Gm10872|Gm24562	myocardial infraction associated transcript 2	ncRNA	0.000000	0.477612	
mm_76482.1	chr8	85555188	85555388	-	1	NA	NA	NA	-17	NM_019794	56445	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0.150000	0.741294	
mm_155935.1	chrX	103630486	103630686	+	1	NA	NA	NA	0	NM_029158	75064	Mm.159414	NM_029158	ENSMUSG00000031330	Zcchc13	4930513O09Rik|Cnbp2	zinc finger, CCHC domain containing 13	protein-coding	0.040000	0.532338	
mm_126037.1	chr15	76899868	76900068	+	1	NA	NA	NA	27	NM_025536	66398	Mm.291716	NM_025536	ENSMUSG00000055041	Commd5	2310065H03Rik|AI854466|D15Ertd81e|Hcarg	COMM domain containing 5	protein-coding	0.040000	0.542289	
mm_162828.1	chr10	81378258	81378458	-	1	NA	NA	NA	12	NM_019757	56371	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy/cell division cycle 20 related 1 (Drosophila)	protein-coding	0.130000	0.726368	
mm_92050.1	chr10	62497819	62498019	-	1	NA	NA	NA	9836	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.040000	0.477612	
mm_45661.1	chr5	77134432	77134632	-	1	NA	NA	NA	-19409	NM_175606	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.005000	0.437811	-35(GATTTTATAAGC,-,0.00)
mm_70243.1	chr8	3354563	3354763	+	1	NA	NA	NA	1248	NM_001033378	319493	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0.020000	0.527363	
mm_148589.1	chr19	5068020	5068220	+	1	NA	NA	NA	42	NM_054042	70445	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.115000	0.786070	
mm_11603.1	chr2	33805713	33805913	+	1	NA	NA	NA	-3	NR_045729	320482	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0.040000	0.522388	-34(CGGCTTATAAAG,-,0.00),-32(GCTTATAAAGCC,+,0.00)
mm_152864.1	chr19	24224857	24225057	-	1	NA	NA	NA	69	NM_011597	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.110000	0.691542	
mm_45526.1	chr5	72642637	72642837	-	1	NA	NA	NA	15	NM_007723	12788	Mm.436652	NM_007723	ENSMUSG00000067220	Cnga1	Cncg	cyclic nucleotide gated channel alpha 1	protein-coding	0.015000	0.437811	
mm_149438.1	chr19	11478152	11478352	+	1	NA	NA	NA	8884	NM_028595	73656	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.005000	0.462687	
mm_45410.1	chr5	66323638	66323838	-	1	NA	NA	NA	13927	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.040000	0.507463	-1(GGCTATTAATGG,-,0.00)
mm_126553.1	chr15	82146179	82146379	+	1	NA	NA	NA	-990	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.000000	0.472637	
mm_158148.1	chrX	103468820	103469020	-	1	NA	NA	NA	14313	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.010000	0.422886	
mm_141279.1	chr17	27826841	27827041	-	1	NA	NA	NA	-6399	NM_001271511	224647	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0.020000	0.567164	
mm_5514.1	chr1	37540886	37541086	-	1	NA	NA	NA	30	NM_173870	269181	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.145000	0.825871	
mm_80057.1	chr9	69364281	69364481	+	1	NA	NA	NA	-134	NR_136934	102642202	Mm.415363	NR_136934	ENSMUSG00000086648	Gm15511	OTTMUSG00000023029	predicted gene 15511	ncRNA	0.040000	0.582090	
mm_68069.1	chr7	101868586	101868786	-	1	NA	NA	NA	2102	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.020000	0.482587	
mm_60361.1	chr7	44428859	44429059	+	1	NA	NA	NA	-13528	NM_198250	272381	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	0.175000	0.890547	
mm_92855.1	chr10	81524309	81524509	-	1	NA	NA	NA	-184	NM_010304	14676	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.015000	0.592040	
mm_86113.1	chr9	115458195	115458395	-	1	NA	NA	NA	76476	NR_130329	100316675		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	0.030000	0.507463	
mm_95523.1	chr11	52224236	52224436	+	1	NA	NA	NA	-7659	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.015000	0.457711	
mm_140245.1	chr17	84181535	84181735	+	1	NA	NA	NA	6312	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.020000	0.532338	
mm_143744.1	chr17	81512965	81513165	-	1	NA	NA	NA	225322	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.015000	0.412935	
mm_118671.1	chr14	22019721	22019921	+	1	NA	NA	NA	109	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.075000	0.666667	
mm_145802.1	chr18	65375590	65375790	+	1	NA	NA	NA	18198	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.010000	0.437811	
mm_96547.1	chr11	68853299	68853499	+	1	NA	NA	NA	-268	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.015000	0.447761	
mm_36593.1	chr4	88522745	88522945	-	1	NA	NA	NA	-51	NM_010510	15977	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	0.015000	0.502488	-34(CCTTATAAATAG,+,0.00)
mm_15028.1	chr2	152687089	152687289	+	1	NA	NA	NA	41	NM_025543	66405	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	0.100000	0.567164	
mm_126514.1	chr15	81815018	81815218	+	1	NA	NA	NA	3704	NM_017376	21685	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.030000	0.601990	
mm_92268.1	chr10	71159478	71159678	-	1	NA	NA	NA	112	NM_031397	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	BicC family RNA binding protein 1	protein-coding	0.165000	0.791045	
mm_79869.1	chr9	65101223	65101423	+	1	NA	NA	NA	-163	NM_001290315	56741	Mm.209041	NM_020043	ENSMUSG00000032816	Igdcc4	DDM36|Nope	immunoglobulin superfamily, DCC subclass, member 4	protein-coding	0.135000	0.820896	
mm_162126.1	chrX	72916764	72916964	-	1	NA	NA	NA	1480	NM_019405	26370	Mm.24643	NM_019405	ENSMUSG00000031347	Cetn2	1110034A02Rik|AI326150|Calt|caltractin	centrin 2	protein-coding	0.005000	0.373134	
mm_33708.1	chr4	133751743	133751943	+	1	NA	NA	NA	1768	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.030000	0.532338	
mm_126180.1	chr15	78602679	78602879	+	1	NA	NA	NA	5732	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.000000	0.517413	
mm_85770.1	chr9	109039064	109039264	-	1	NA	NA	NA	597	NM_001284332	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.015000	0.592040	
mm_85352.1	chr9	103211767	103211967	-	1	NA	NA	NA	-9802	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.020000	0.547264	
mm_121457.1	chr14	120480759	120480959	+	1	NA	NA	NA	2398	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.000000	0.383085	
mm_60818.1	chr7	45705139	45705339	+	1	NA	NA	NA	-8	NM_016974	13170	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.045000	0.572139	
mm_29861.1	chr3	130060718	130060918	-	1	NA	NA	NA	89	NM_207209	99683	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.140000	0.771144	
mm_129575.1	chr15	79734283	79734483	-	1	NA	NA	NA	8153	NM_194342	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.015000	0.542289	
mm_2591.1	chr1	119305509	119305709	+	1	NA	NA	NA	116639	NM_008381	16324	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	0.035000	0.582090	
mm_155914.1	chrX	102004774	102004974	+	1	NA	NA	NA	66433	NM_001278534	331474	Mm.23297	NM_183318	ENSMUSG00000049191	Rgag4	6430402L03Rik|Mar5|Mart5|mKIAA2001	retrotransposon gag domain containing 4	protein-coding	0.010000	0.542289	
mm_125917.1	chr15	76150179	76150379	+	1	NA	NA	NA	-23723	NM_001142968	271278	Mm.205253	NM_198172	ENSMUSG00000044361	BC024139	6230424I18Rik	cDNA sequence BC024139	protein-coding	0.075000	0.572139	
mm_172360.1	chr7	11805420	11805620	-	1	NA	NA	NA	-41255	NM_134206	171240	Mm.377196	NM_134206	ENSMUSG00000047655	Vmn1r74	V1rg5	vomeronasal 1 receptor 74	protein-coding	0.025000	0.527363	
mm_51242.1	chr6	71545137	71545337	+	1	NA	NA	NA	1383	NM_025783	66700	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	0.025000	0.333333	
mm_41985.1	chr5	107597672	107597872	+	1	NA	NA	NA	76	NM_001289569	231571	Mm.482420	NM_144911	ENSMUSG00000033773	Rpap2	AW060207	RNA polymerase II associated protein 2	protein-coding	0.085000	0.681592	
mm_30629.1	chr4	8785447	8785647	+	1	NA	NA	NA	95141	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.020000	0.447761	
mm_854.1	chr1	52119816	52120016	+	1	NA	NA	NA	294	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.055000	0.542289	
mm_151354.1	chr19	55898501	55898701	+	1	NA	NA	NA	3280	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.010000	0.542289	
mm_35219.1	chr4	19656102	19656302	-	1	NA	NA	NA	52802	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.005000	0.383085	
mm_146984.1	chr18	33891547	33891747	-	1	NA	NA	NA	96755	NR_038151	69749	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.030000	0.527363	
mm_162262.1	chrY	2720628	2720828	-	1	NA	NA	NA	-54	NM_001177569	547210	Mm.472681	NM_001177569	ENSMUSG00000094881	H2al2c	Gm6026|H2al2y	H2A histone family member L2C	protein-coding	0.010000	0.477612	
mm_31746.1	chr4	63344426	63344626	+	1	NA	NA	NA	-30	NM_008768	18405	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding	0.020000	0.517413	
mm_60254.1	chr7	43791845	43792045	+	1	NA	NA	NA	54	NM_028660	101533	Mm.19942	NM_028660	ENSMUSG00000047884	Klk9	1200016C12Rik|AI324041	kallikrein related-peptidase 9	protein-coding	0.020000	0.567164	
mm_171823.1	chr5	142693969	142694169	+	1	NA	NA	NA	-8032	NM_146257	243328	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.005000	0.303483	
mm_117143.1	chr13	61005824	61006024	-	1	NA	NA	NA	-13	NM_012007	26898	Mm.31948	NM_012007	ENSMUSG00000055298	Ctsj	CATP|CatRLP|Ctsp	cathepsin J	protein-coding	0.005000	0.547264	
mm_165125.1	chr2	5137638	5137838	+	1	NA	NA	NA	-38	NM_028804	74186	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	0.130000	0.716418	-8(CCCTTTTTAAGC,-,0.00)
mm_137951.1	chr17	32891689	32891889	+	1	NA	NA	NA	-186	NM_207245	240066	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0.030000	0.502488	
mm_80340.1	chr9	75071448	75071648	+	1	NA	NA	NA	342	NM_010864	17918	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	0.175000	0.855721	
mm_149774.1	chr19	23090842	23091042	+	1	NA	NA	NA	-50284	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.010000	0.452736	
mm_7901.1	chr1	133655064	133655264	-	1	NA	NA	NA	5721	NM_001166552	667118	Mm.245357	NM_001166552	ENSMUSG00000094410	Zbed6	Gm8466|MGR	zinc finger, BED type containing 6	protein-coding	0.000000	0.298507	
mm_83598.1	chr9	48494346	48494546	-	1	NA	NA	NA	884	NM_001326355	67010	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	0.015000	0.388060	-47(CTTCCTAAAAGG,-,0.00)
mm_14647.1	chr2	136910083	136910283	+	1	NA	NA	NA	10832	NM_001038641	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.000000	0.368159	
mm_100419.1	chr11	119436639	119436839	+	1	NA	NA	NA	46267	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.035000	0.592040	
mm_64848.1	chr7	13033859	13034059	-	1	NA	NA	NA	818	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.040000	0.547264	
mm_81562.1	chr9	110415421	110415621	+	1	NA	NA	NA	-4287	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.015000	0.527363	
mm_123852.1	chr14	70777757	70777957	-	1	NA	NA	NA	3476	NM_010071	13449	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip	docking protein 2	protein-coding	0.015000	0.597015	
mm_89337.1	chr10	87933926	87934126	+	1	NA	NA	NA	-32645	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.020000	0.407960	
mm_53993.1	chr6	6881839	6882039	-	1	NA	NA	NA	129	NM_198854	13395	Mm.4873	NM_010056	ENSMUSG00000029755	Dlx5	AI385752	distal-less homeobox 5	protein-coding	0.070000	0.646766	
mm_101021.1	chr11	8575561	8575761	-	1	NA	NA	NA	88874	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.010000	0.457711	
mm_168619.1	chr11	78094566	78094766	+	1	NA	NA	NA	-1	NM_001346762	216971	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0.100000	0.691542	
mm_33633.1	chr4	132918049	132918249	+	1	NA	NA	NA	4402	NM_145553	230789	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0.005000	0.388060	
mm_154976.1	chrX	37826859	37827059	+	1	NA	NA	NA	-96	NM_008955	19202	Mm.10105	NM_008955	ENSMUSG00000006200	Rhox6	AV213605|AW548842|Psx1	reproductive homeobox 6	protein-coding	0.050000	0.562189	
mm_84632.1	chr9	70934511	70934711	-	1	NA	NA	NA	197	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.005000	0.437811	
mm_78130.1	chr9	20867024	20867224	+	1	NA	NA	NA	-1518	NM_175687	319278	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	0.005000	0.457711	
mm_118898.1	chr14	26638143	26638343	+	1	NA	NA	NA	46	NM_007479	11843	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.140000	0.706468	
mm_14876.1	chr2	148799858	148800058	+	1	NA	NA	NA	1119	NM_009978	13012	Mm.20435	NM_009978	ENSMUSG00000027442	Cst8	Cres|Cst-rs1	cystatin 8 (cystatin-related epididymal spermatogenic)	protein-coding	0.010000	0.492537	
mm_153812.1	chr19	46045295	46045495	-	1	NA	NA	NA	-184	NM_001113408	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.170000	0.736318	
mm_106252.1	chr11	117825728	117825928	-	1	NA	NA	NA	-91	NM_027827	71562	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	0.060000	0.562189	
mm_53650.1	chr6	140776768	140776968	+	1	NA	NA	NA	149983	NM_001309436	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.000000	0.457711	
mm_100588.1	chr11	120949418	120949618	+	1	NA	NA	NA	451	NM_001038654	80879	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0.070000	0.646766	-33(GAGTATAAATAG,-,0.00)
mm_114053.1	chr13	54346543	54346743	+	1	NA	NA	NA	-24706	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.010000	0.373134	
mm_76698.1	chr8	94194708	94194908	-	1	NA	NA	NA	15719	NM_013602	17748	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.015000	0.472637	-35(ATCTTTATAAAG,-,0.00),-33(CTTTATAAAGCA,+,0.00)
mm_98860.1	chr11	97685835	97686035	+	1	NA	NA	NA	-17	NM_001085500	217149	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	0.080000	0.646766	
mm_98147.1	chr11	87592087	87592287	+	1	NA	NA	NA	-30	NM_133215	170749	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0.090000	0.671642	
mm_39760.1	chr5	29936291	29936491	+	1	NA	NA	NA	-76723	NM_001314054	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.010000	0.462687	-33(AGGTATAAAAAG,-,0.00)
mm_74980.1	chr8	27141515	27141715	-	1	NA	NA	NA	-1295	NR_045840	71082	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.020000	0.502488	
mm_141692.1	chr17	33975427	33975627	-	1	NA	NA	NA	3264	NR_004446	630499	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	0.015000	0.527363	
mm_100715.1	chr11	3863778	3863978	-	1	NA	NA	NA	25	NM_152818	74309	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	0.125000	0.756219	
mm_168624.1	chr1	179971650	179971850	+	1	NA	NA	NA	10661	NM_001033285	226751	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	0.020000	0.497512	
mm_166523.1	chr6	24597810	24598010	+	1	NA	NA	NA	139	NM_053098	93677	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	0.010000	0.507463	
mm_15736.1	chr2	164237116	164237316	+	1	NA	NA	NA	1125	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.000000	0.398010	
mm_126896.1	chr15	89499989	89500189	+	1	NA	NA	NA	232	NM_021423	58234	Mm.146855	NM_021423	ENSMUSG00000022623	Shank3	AI841104|SHANK3c-3|SHANK3c-4|Shank3b	SH3/ankyrin domain gene 3	protein-coding	0.125000	0.825871	
mm_169232.1	chr13	68235723	68235923	-	1	NA	NA	NA	346281	NM_001308475	210009	Mm.205514	NM_172480	ENSMUSG00000034617	Mtrr	4732420G08|MSR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding	0.000000	0.378109	
mm_70974.1	chr8	27143053	27143253	+	1	NA	NA	NA	243	NR_045840	71082	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.045000	0.547264	
mm_131624.1	chr16	20097509	20097709	+	1	NA	NA	NA	55	NM_029436	75785	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	0.100000	0.671642	
mm_87508.1	chr10	52417456	52417656	+	1	NA	NA	NA	9	NM_030250	52014	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.105000	0.711443	
mm_125497.1	chr15	55208629	55208829	+	1	NA	NA	NA	75293	NM_001037937	97998	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	0.030000	0.537313	
mm_73050.1	chr8	94358046	94358246	+	1	NA	NA	NA	-28354	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.000000	0.407960	
mm_54247.1	chr6	28259933	28260133	-	1	NA	NA	NA	1568	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.010000	0.298507	4(TCTTAAAAGGAC,+,0.00)
mm_17257.1	chr2	25847232	25847432	-	1	NA	NA	NA	-84	NM_001001714	227631	Mm.301632	NM_001001714	ENSMUSG00000059625	Sohlh1	Gm110|Nohlh	spermatogenesis and oogenesis specific basic helix-loop-helix 1	protein-coding	0.045000	0.676617	
mm_90739.1	chr10	5367615	5367815	-	1	NA	NA	NA	120599	NM_001347711	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.025000	0.452736	
mm_42140.1	chr5	111417185	111417385	+	1	NA	NA	NA	-881	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.145000	0.721393	
mm_132435.1	chr16	35919303	35919503	+	1	NA	NA	NA	-19067	NM_030253	80285	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.020000	0.442786	
mm_15023.1	chr2	152685233	152685433	+	1	NA	NA	NA	-1815	NM_025543	66405	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	0.005000	0.477612	
mm_61342.1	chr7	68282819	68283019	+	1	NA	NA	NA	-6325	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.030000	0.432836	3(CCATATATAGTC,+,0.00)
mm_22315.1	chr2	180439787	180439987	-	1	NA	NA	NA	-21091	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.015000	0.517413	
mm_15524.1	chr2	158382072	158382272	+	1	NA	NA	NA	6534	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.000000	0.417910	
mm_33747.1	chr4	134244098	134244298	+	1	NA	NA	NA	435	NR_040436	77490	Mm.426238	NR_040435	ENSMUSG00000086322	E130218I03Rik	E130106C14Rik	RIKEN cDNA E130218I03 gene	ncRNA	0.020000	0.582090	
mm_1825.1	chr1	82587132	82587332	+	1	NA	NA	NA	311	NM_007734	12828	Mm.389135	NM_007734	ENSMUSG00000079465	Col4a3	[a]3(IV)|alpha3(IV)	collagen, type IV, alpha 3	protein-coding	0.055000	0.597015	
mm_137691.1	chr17	28905139	28905339	+	1	NA	NA	NA	-26	NR_045457	74179	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	0.010000	0.572139	
mm_29556.1	chr3	116807847	116808047	-	1	NA	NA	NA	219	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.085000	0.587065	
mm_173186.1	chrX	60183623	60183823	-	1	NA	NA	NA	-4634	NM_001289731	109904	Mm.93796	NM_133197	ENSMUSG00000031139	Mcf2	B230117G22Rik|Dbl|Mcf-2	mcf.2 transforming sequence	protein-coding	0.010000	0.542289	
mm_140165.1	chr17	80254600	80254800	+	1	NA	NA	NA	30211	NM_026053	67242	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem (nuclear organelle) associated protein 6	protein-coding	0.005000	0.472637	
mm_117919.1	chr13	99433364	99433564	-	1	NA	NA	NA	-20638	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.040000	0.557214	
mm_92483.1	chr10	78297758	78297958	-	1	NA	NA	NA	42349	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.010000	0.626866	
mm_111188.1	chr12	84173364	84173564	-	1	NA	NA	NA	20551	NM_001163502	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.020000	0.601990	
mm_160221.1	chr7	101372819	101373019	+	1	NA	NA	NA	-5203	NM_001040112	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.030000	0.532338	
mm_87182.1	chr10	39136850	39137050	+	1	NA	NA	NA	2927	NM_028006	71924	Mm.297956	NM_028006	ENSMUSG00000019845	Tube1	2310061K05Rik|AI551343|Tube	epsilon-tubulin 1	protein-coding	0.005000	0.447761	
mm_35325.1	chr4	25800350	25800550	-	1	NA	NA	NA	-447	NM_010243	14348	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.020000	0.522388	
mm_30259.1	chr3	146731153	146731353	-	1	NA	NA	NA	38985	NM_001164198	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.005000	0.313433	58(CCTTAAATAGTC,+,0.00)
mm_83408.1	chr9	44801711	44801911	-	1	NA	NA	NA	1140	NM_138951	192653	Mm.325487	NM_138951	ENSMUSG00000039438	Ttc36	-	tetratricopeptide repeat domain 36	protein-coding	0.010000	0.552239	
mm_121372.1	chr14	118098358	118098558	+	1	NA	NA	NA	34307	NM_029578	76355	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	0.000000	0.492537	
mm_84358.1	chr9	64704516	64704716	-	1	NA	NA	NA	33140	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.015000	0.472637	
mm_61107.1	chr7	52015729	52015929	+	1	NA	NA	NA	-113	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	0.005000	0.487562	
mm_41718.1	chr5	102175214	102175414	+	1	NA	NA	NA	-105393	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.005000	0.517413	
mm_87416.1	chr10	50356496	50356696	+	1	NA	NA	NA	-236073	NM_198007	77987	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.000000	0.363184	
mm_129441.1	chr15	78529511	78529711	-	1	NA	NA	NA	40	NM_001204153	72709	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	0.035000	0.641791	
mm_80715.1	chr9	92275659	92275859	+	1	NA	NA	NA	157	NM_001195084	18828	Mm.10306	NM_008880	ENSMUSG00000032372	Plscr2	-	phospholipid scramblase 2	protein-coding	0.010000	0.437811	
mm_78766.1	chr9	43310697	43310897	+	1	NA	NA	NA	34	NM_023655	72169	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	0.035000	0.631841	
mm_49350.1	chr6	21986257	21986457	+	1	NA	NA	NA	447	NM_001081351	214642	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.060000	0.522388	-60(CAACATAAAAGG,-,0.00),-34(GCTTTAAAACCG,+,0.00)
mm_80650.1	chr9	89909808	89910008	+	1	NA	NA	NA	133	NM_001039655	19417	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	0.090000	0.631841	
mm_51806.1	chr6	88733465	88733665	+	1	NA	NA	NA	8861	NM_001166251	23945	Mm.272197	NM_011844	ENSMUSG00000033174	Mgll	AA589436|Magl|Mgl	monoglyceride lipase	protein-coding	0.030000	0.592040	
mm_160005.1	chr6	124636099	124636299	-	1	NA	NA	NA	-114	NM_173864	317677	Mm.483270	NM_173864	ENSMUSG00000079343	C1s2	C1sb|EG317677|Gm5077	complement component 1, s subcomponent 2	protein-coding	0.000000	0.482587	
mm_74341.1	chr8	127178937	127179137	+	1	NA	NA	NA	114981	NM_001309391	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.010000	0.447761	
mm_112037.1	chr12	111574295	111574495	-	1	NA	NA	NA	7	NR_045295	100504687	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	0.085000	0.656716	
mm_55127.1	chr6	50596469	50596669	-	1	NA	NA	NA	21	NM_027564	70821	Mm.157323	NM_027564	ENSMUSG00000029828	4921507P07Rik	TISP74	RIKEN cDNA 4921507P07 gene	protein-coding	0.110000	0.701493	
mm_159477.1	chr4	33209095	33209295	+	1	NA	NA	NA	204	NM_177774	272009	Mm.156636	NM_177774	ENSMUSG00000054679	Srsf12	B830039L16|Sfrs13b|Srrp|Srsf13b	serine/arginine-rich splicing factor 12	protein-coding	0.110000	0.761194	
mm_173213.1	chrX	73214289	73214489	+	1	NA	NA	NA	56	NM_001293679	27083	Mm.104764	NM_021365	ENSMUSG00000067768	Xlr4b	Xlr4	X-linked lymphocyte-regulated 4B	protein-coding	0.040000	0.547264	
mm_97481.1	chr11	78324249	78324449	+	1	NA	NA	NA	151	NM_009657	11676	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0.010000	0.527363	
mm_1175.1	chr1	60998090	60998290	+	1	NA	NA	NA	20276	NM_017480	54167	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0.015000	0.417910	
mm_167116.1	chr7	118761360	118761560	-	1	NA	NA	NA	21189	NM_027815	71517	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	0.030000	0.522388	
mm_57430.1	chr6	124914110	124914310	-	1	NA	NA	NA	-2505	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.030000	0.611940	
mm_93449.1	chr10	109986457	109986657	-	1	NA	NA	NA	13662	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.025000	0.462687	-5(CATTTTAGAGGC,+,0.00)
mm_62338.1	chr7	100496662	100496862	+	1	NA	NA	NA	3404	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.020000	0.547264	
mm_126362.1	chr15	80091103	80091303	+	1	NA	NA	NA	-131	NM_009303	20972	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0.090000	0.676617	
mm_142261.1	chr17	39844293	39844493	-	1	NA	NA	NA	1396	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.135000	0.706468	
mm_25543.1	chr3	115815768	115815968	+	1	NA	NA	NA	72191	NR_027894	68161	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.025000	0.452736	
mm_113177.1	chr13	24831611	24831811	+	1	NA	NA	NA	52	NM_019551	56196	Mm.427162	NM_019551	ENSMUSG00000035958	Tdp2	D13Ertd656e|Ttrap	tyrosyl-DNA phosphodiesterase 2	protein-coding	0.160000	0.721393	
mm_104539.1	chr11	96467021	96467221	-	1	NA	NA	NA	2530	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.015000	0.472637	-34(GACTATATAGAG,-,0.00)
mm_23336.1	chr3	54569807	54570007	+	1	NA	NA	NA	-123198	NM_019995	56790	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0.010000	0.472637	
mm_96941.1	chr11	70540188	70540388	+	1	NA	NA	NA	16	NM_001302476	18806	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	0.110000	0.766169	
mm_159218.1	chr2	127338675	127338875	+	1	NA	NA	NA	136	NM_172539	215095	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	0.005000	0.487562	
mm_65712.1	chr7	28378110	28378310	-	1	NA	NA	NA	1018	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.065000	0.606965	
mm_86948.1	chr10	24869886	24870086	+	1	NA	NA	NA	0	NM_001166416	70208	Mm.28020	NM_027347	ENSMUSG00000019984	Med23	130kDa|3000002A17Rik|Crsp3|ESTM7|Sur2|X83317|mKIAA1216	mediator complex subunit 23	protein-coding	0.080000	0.631841	
mm_139224.1	chr17	47730511	47730711	+	1	NA	NA	NA	3769	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.020000	0.562189	
mm_123569.1	chr14	66910961	66911161	-	1	NA	NA	NA	-147	NM_175498	239157	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	0.090000	0.721393	
mm_14867.1	chr2	148799393	148799593	+	1	NA	NA	NA	654	NM_009978	13012	Mm.20435	NM_009978	ENSMUSG00000027442	Cst8	Cres|Cst-rs1	cystatin 8 (cystatin-related epididymal spermatogenic)	protein-coding	0.005000	0.358209	
mm_81955.1	chr9	120571382	120571582	+	1	NA	NA	NA	-35	NM_025974	67115	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	0.125000	0.661692	
mm_133921.1	chr16	97734829	97735029	+	1	NA	NA	NA	28826	NM_023663	72388	Mm.35290	NM_023663	ENSMUSG00000005251	Ripk4	2310069J12Rik|AI552420|ANKK2|Ankrd3|DIk|PKK|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding	0.015000	0.567164	
mm_704.1	chr1	40681526	40681726	+	1	NA	NA	NA	-86	NM_001033289	226999	Mm.256414	NM_001033289	ENSMUSG00000026062	Slc9a2	2210416H12Rik|4932415O19Rik|AV333884|NHE2	solute carrier family 9 (sodium/hydrogen exchanger), member 2	protein-coding	0.130000	0.805970	
mm_157441.1	chrX	40137488	40137688	-	1	NA	NA	NA	-273984	NM_001191032	100504400	Mm.373409	NM_001191032	ENSMUSG00000095240	Cypt14	-	cysteine-rich perinuclear theca 14	protein-coding	0.020000	0.492537	
mm_97377.1	chr11	77710870	77711070	+	1	NA	NA	NA	14323	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.005000	0.303483	
mm_119400.1	chr14	43713633	43713833	+	1	NA	NA	NA	-105720	NM_001098269	100042342	Mm.429750	NM_001098269	ENSMUSG00000095528	Gm10375	ENSMUSG00000072602	predicted gene 10375	protein-coding	0.050000	0.542289	
mm_77859.1	chr9	5312791	5312991	+	1	NA	NA	NA	4042	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.000000	0.263682	
mm_52194.1	chr6	99877870	99878070	+	1	NA	NA	NA	-151578	NM_001170419	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.005000	0.388060	17(AGTCATAAAAGG,-,0.00)
mm_115556.1	chr13	8995963	8996163	-	1	NA	NA	NA	-51	NM_027000	69237	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0.115000	0.621891	
mm_72595.1	chr8	84414329	84414529	+	1	NA	NA	NA	-935	NM_001252060	12286	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.105000	0.731343	
mm_35330.1	chr4	26346758	26346958	-	1	NA	NA	NA	-206	NM_172865	242362	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.075000	0.656716	
mm_20397.1	chr2	129198456	129198656	-	1	NA	NA	NA	-217	NM_015747	20515	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.100000	0.731343	
mm_166269.1	chr5	90460689	90460889	+	1	NA	NA	NA	-81	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.417910	
mm_153025.1	chr19	31624403	31624603	-	1	NA	NA	NA	39867	NM_011160	19091	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0.005000	0.333333	
mm_45117.1	chr5	45639420	45639620	-	1	NA	NA	NA	-19	NM_021416	58227	Mm.266466	NM_021416	ENSMUSG00000015879	Fam184b	9630031F12Rik|AB041544	family with sequence similarity 184, member B	protein-coding	0.070000	0.636816	
mm_84167.1	chr9	59750530	59750730	-	1	NA	NA	NA	19	NM_001172069	71599	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0.035000	0.492537	
mm_106210.1	chr11	116851360	116851560	-	1	NA	NA	NA	1634	NM_011358	20382	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0.015000	0.393035	37(TCTTTTTAAAGG,-,0.00),38(CTTTTTAAAGGA,+,0.00)
mm_96822.1	chr11	69994600	69994800	+	1	NA	NA	NA	-1066	NM_001291125	78246	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.010000	0.467662	
mm_94302.1	chr11	4160276	4160476	+	1	NA	NA	NA	22	NM_026175	67465	Mm.156914	NM_026175	ENSMUSG00000002129	Sf3a1	1200014H24Rik|5930416L09Rik|AI159724	splicing factor 3a, subunit 1	protein-coding	0.110000	0.636816	
mm_113151.1	chr13	24773002	24773202	+	1	NA	NA	NA	-11165	NM_020567	57441	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.025000	0.487562	
mm_99063.1	chr11	99155177	99155377	+	1	NA	NA	NA	-200	NM_007719	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.020000	0.532338	
mm_168756.1	chr12	116047978	116048178	+	1	NA	NA	NA	354	NM_019565	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0.060000	0.641791	
mm_53767.1	chr6	145862657	145862857	+	1	NA	NA	NA	2663	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.040000	0.547264	
mm_86276.1	chr9	121792384	121792584	-	1	NA	NA	NA	23	NM_029095	74770	Mm.44195	NM_029095	ENSMUSG00000032523	Hhatl	1110011D13Rik|Gup1|Mg56	hedgehog acyltransferase-like	protein-coding	0.025000	0.671642	
mm_43636.1	chr5	138229691	138229891	+	1	NA	NA	NA	3887	NM_001013773	381680	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0.005000	0.388060	
mm_139593.1	chr17	57226175	57226375	+	1	NA	NA	NA	1861	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.020000	0.527363	
mm_61225.1	chr7	64501633	64501833	+	1	NA	NA	NA	27	NM_007461	11784	Mm.4657	NM_007461	ENSMUSG00000030519	Apba2	X11-like|X11L|XllL|mXllL	amyloid beta (A4) precursor protein-binding, family A, member 2	protein-coding	0.055000	0.666667	
mm_160067.1	chr7	5116621	5116821	-	1	NA	NA	NA	190	NM_001145013	192658	Mm.28764	NM_138954	ENSMUSG00000035191	Rfpl4	D7Ertd486e|Rfpl4a	ret finger protein-like 4	protein-coding	0.000000	0.457711	
mm_57672.1	chr6	128491459	128491659	-	1	NA	NA	NA	35161	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.010000	0.457711	
mm_65382.1	chr7	25091083	25091283	-	1	NA	NA	NA	5992	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.005000	0.412935	
mm_38078.1	chr4	134127940	134128140	-	1	NA	NA	NA	713	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.025000	0.557214	
mm_134850.1	chr16	27444493	27444693	-	1	NA	NA	NA	55637	NM_001289436	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.005000	0.477612	
mm_102534.1	chr11	61174873	61175073	-	1	NA	NA	NA	86	NM_001004143	216825	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	0.115000	0.736318	
mm_45675.1	chr5	77246132	77246332	-	1	NA	NA	NA	-19262	NM_011263	19712	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.025000	0.542289	
mm_17348.1	chr2	26607720	26607920	-	1	NA	NA	NA	-3403	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.010000	0.542289	
mm_64572.1	chr7	144914353	144914553	+	1	NA	NA	NA	-647	NM_001347536	72284	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	0.040000	0.527363	
mm_147841.1	chr18	62615645	62615845	-	1	NA	NA	NA	-19481	NM_001001803	408198	Mm.478742	NM_001001803	ENSMUSG00000060201	Spink7	EG408198|Ecg2	serine peptidase inhibitor, Kazal type 7 (putative)	protein-coding	0.010000	0.527363	
mm_82070.1	chr9	122886731	122886931	+	1	NA	NA	NA	-1640	NM_001177505	382118	Mm.86999	NM_001177505	ENSMUSG00000063488	Zkscan7	BC042569|Zfp167	zinc finger with KRAB and SCAN domains 7	protein-coding	0.085000	0.567164	
mm_124137.1	chr14	86748978	86749178	-	1	NA	NA	NA	392036	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding	0.030000	0.492537	
mm_85517.1	chr9	106438117	106438317	-	1	NA	NA	NA	19	NM_025371	109652	Mm.7165	NM_025371	ENSMUSG00000023262	Acy1	1110014J22Rik|Acy-1	aminoacylase 1	protein-coding	0.070000	0.651741	
mm_105899.1	chr11	114982674	114982874	-	1	NA	NA	NA	7112	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.000000	0.472637	
mm_125100.1	chr15	27641377	27641577	+	1	NA	NA	NA	-10784	NM_001013792	432940	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.030000	0.457711	-51(CACCTTTAAAGA,-,0.00),-49(CCTTTAAAGATC,+,0.00)
mm_9491.1	chr1	173729416	173729616	-	1	NA	NA	NA	12293	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.005000	0.512438	
mm_74101.1	chr8	122709416	122709616	+	1	NA	NA	NA	-10407	NM_009824	12398	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0.050000	0.681592	
mm_57577.1	chr6	127149520	127149720	-	1	NA	NA	NA	-6	NR_040275	77558	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.040000	0.626866	
mm_46933.1	chr5	114761860	114762060	-	1	NA	NA	NA	11531	NM_019834	26431	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0.015000	0.502488	
mm_149279.1	chr19	10606181	10606381	+	1	NA	NA	NA	656	NM_015735	13194	Mm.289915	NM_015735	ENSMUSG00000024740	Ddb1	127kDa|AA408517|p127-Ddb1	damage specific DNA binding protein 1	protein-coding	0.030000	0.532338	
mm_80701.1	chr9	92249584	92249784	+	1	NA	NA	NA	-510	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.025000	0.398010	
mm_95080.1	chr11	32696753	32696953	+	1	NA	NA	NA	54298	NM_001271347	103583	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.000000	0.293532	
mm_41889.1	chr5	105495504	105495704	+	1	NA	NA	NA	-23867	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.020000	0.472637	-94(CACCTTAAAAGA,-,0.00)
mm_123682.1	chr14	69515390	69515590	-	1	NA	NA	NA	-2941	NM_173420	239167	Mm.259889	NM_173420	ENSMUSG00000047977	Synb	D930020E02Rik|syncytin-B	syncytin b	protein-coding	0.015000	0.552239	
mm_84760.1	chr9	75597628	75597828	-	1	NA	NA	NA	1405	NM_001038710	50876	Mm.291880	NM_016711	ENSMUSG00000032186	Tmod2	N-Tmod|NTMOD	tropomodulin 2	protein-coding	0.015000	0.462687	
mm_35835.1	chr4	48042762	48042962	-	1	NA	NA	NA	-2443	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.065000	0.621891	
mm_80761.1	chr9	95559055	95559255	+	1	NA	NA	NA	-662	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.040000	0.562189	
mm_59985.1	chr7	30552448	30552648	+	1	NA	NA	NA	-276	NM_183321	333193	Mm.34885	NM_183321	ENSMUSG00000036864	Proser3	-	proline and serine rich 3	protein-coding	0.035000	0.502488	
mm_93728.1	chr10	119240413	119240613	-	1	NA	NA	NA	-458	NM_027994	71902	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	0.050000	0.517413	
mm_171476.1	chr4	145798009	145798209	+	1	NA	NA	NA	8594	NR_040355	70005	Mm.276881	NM_027285		Znf41-ps	1700029I01Rik	ZNF41, pseudogene	pseudo	0.010000	0.467662	
mm_115275.1	chr13	111686133	111686333	+	1	NA	NA	NA	55	NM_172593	218613	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0.175000	0.820896	-35(TGCCCTATAAGG,-,0.00),-33(CCCTATAAGGGG,+,0.00),-33(CCCTATAAGGGG,-,0.00)
mm_111532.1	chr12	100724898	100725098	-	1	NA	NA	NA	122	NM_001330702	73086	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0.100000	0.691542	
mm_120066.1	chr14	56924816	56925016	+	1	NA	NA	NA	37121	NM_029498	76007	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.015000	0.427861	
mm_54443.1	chr6	34422929	34423129	-	1	NA	NA	NA	10667	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.020000	0.412935	
mm_132766.1	chr16	44748209	44748409	+	1	NA	NA	NA	-1946	NM_025332	66067	Mm.34520	NM_025332	ENSMUSG00000022668	Gtpbp8	0610037H22Rik	GTP-binding protein 8 (putative)	protein-coding	0.010000	0.393035	
mm_73589.1	chr8	109991584	109991784	+	1	NA	NA	NA	1248	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.035000	0.532338	
mm_115405.1	chr13	114111075	114111275	+	1	NA	NA	NA	40417	NR_045836	319803	Mm.386896	NM_177004		A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	0.015000	0.328358	
mm_146799.1	chr18	20694643	20694843	-	1	NA	NA	NA	29493	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.000000	0.452736	
mm_143340.1	chr17	66517951	66518151	-	1	NA	NA	NA	1619	NM_024448	19328	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0.010000	0.318408	
mm_63494.1	chr7	127777024	127777224	+	1	NA	NA	NA	-265	NM_178029	233904	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	0.095000	0.681592	
mm_45302.1	chr5	65391330	65391530	-	1	NA	NA	NA	1	NM_011292	20005	Mm.300271	NM_011292	ENSMUSG00000047215	Rpl9	-	ribosomal protein L9	protein-coding	0.125000	0.606965	-51(CCGCCTTAAAGC,-,0.00)
mm_158400.1	chrX	136743584	136743784	-	1	NA	NA	NA	2	NM_001168230	56397	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	0.045000	0.547264	-35(GAGTATATAAGG,-,0.00)
mm_803.1	chr1	45348636	45348836	+	1	NA	NA	NA	37198	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.010000	0.417910	2(CTTTTTATAAGC,+,0.00),2(CTTTTTATAAGC,-,0.00)
mm_32552.1	chr4	109407007	109407207	+	1	NA	NA	NA	7	NM_153392	230603	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.180000	0.835821	
mm_112757.1	chr13	19344117	19344317	+	1	NA	NA	NA	51596	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.467662	
mm_140835.1	chr17	23669887	23670087	-	1	NA	NA	NA	-3621	NM_181821	353502	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	0.025000	0.631841	
mm_162322.1	chr1	39482337	39482537	-	1	NA	NA	NA	-3690	NM_018775	54610	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.010000	0.492537	
mm_116967.1	chr13	56178488	56178688	-	1	NA	NA	NA	297	NM_145976	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.045000	0.631841	
mm_52730.1	chr6	120364321	120364521	+	1	NA	NA	NA	-52	NR_045558	67200	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	0.090000	0.601990	
mm_131122.1	chr16	5431381	5431581	+	1	NA	NA	NA	-175525	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.010000	0.542289	
mm_141183.1	chr17	26939106	26939306	-	1	NA	NA	NA	252	NR_104458	67675	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	0.030000	0.547264	
mm_104637.1	chr11	97523810	97524010	-	1	NA	NA	NA	-23570	NM_001289118	100141474	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.000000	0.606965	
mm_39253.1	chr5	3515114	3515314	+	1	NA	NA	NA	-28619	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.020000	0.532338	
mm_61704.1	chr7	81213395	81213595	+	1	NA	NA	NA	-309	NM_008803	18584	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.155000	0.741294	
mm_13978.1	chr2	121450210	121450410	+	1	NA	NA	NA	1112	NR_110986	378702	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	0.015000	0.517413	
mm_172255.1	chr6	70341374	70341574	-	1	NA	NA	NA	450701	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.437811	
mm_165265.1	chr2	74715875	74716075	-	1	NA	NA	NA	155	NR_027899	73429	Mm.443313	NR_027899		Hoxd3os1	1700064D17Rik|1700109F18Rik	homeobox D3, opposite strand 1	ncRNA	0.065000	0.626866	
mm_93208.1	chr10	94943780	94943980	-	1	NA	NA	NA	698	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.100000	0.646766	
mm_167433.1	chr8	119415889	119416089	+	1	NA	NA	NA	21097	NM_019966	56690	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	0.000000	0.587065	
mm_104283.1	chr11	89841173	89841373	-	1	NA	NA	NA	-144337	NM_001327810	382543	Mm.60997	NM_172534	ENSMUSG00000047773	Ankfn1	4932411E22Rik|Gm1175|nmf9	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding	0.010000	0.482587	
mm_58538.1	chr7	4480684	4480884	+	1	NA	NA	NA	-9900	NR_028416	320749	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	0.005000	0.452736	
mm_74653.1	chr8	13471423	13471623	-	1	NA	NA	NA	23012	NM_019521	14456	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0.050000	0.567164	
mm_39417.1	chr5	15934591	15934791	+	1	NA	NA	NA	0	NM_001110843	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.150000	0.800995	
mm_54359.1	chr6	31088447	31088647	-	1	NA	NA	NA	-25454	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.010000	0.388060	35(GTCTTTAAAAAG,-,0.00)
mm_54003.1	chr6	7693061	7693261	-	1	NA	NA	NA	21	NM_012055	27053	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0.085000	0.661692	
mm_165618.1	chr3	58525635	58525835	-	1	NA	NA	NA	-86	NM_001005509	229317	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	0.115000	0.711443	
mm_148317.1	chr18	83768069	83768269	-	1	NA	NA	NA	318393	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.010000	0.537313	
mm_44933.1	chr5	36321542	36321742	-	1	NA	NA	NA	20072	NR_106162	102465792		NR_106162	ENSMUSG00000098884	Mir7689	Gm27434|mmu-mir-7689	microRNA 7689	ncRNA	0.025000	0.567164	
mm_125685.1	chr15	66798648	66798848	+	1	NA	NA	NA	33081	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.005000	0.477612	
mm_141784.1	chr17	34301099	34301299	-	1	NA	NA	NA	-4668	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.030000	0.472637	
mm_9997.1	chr1	191396953	191397153	-	1	NA	NA	NA	-12	NM_144880	226849	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0.110000	0.716418	
mm_115165.1	chr13	107890993	107891193	+	1	NA	NA	NA	-1029	NM_145456	67263	Mm.490418	NM_145456	ENSMUSG00000032846	Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.120000	0.726368	
mm_88799.1	chr10	80696307	80696507	+	1	NA	NA	NA	5413	NM_172457	208228	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.015000	0.537313	
mm_148099.1	chr18	73970756	73970956	-	1	NA	NA	NA	-47051	NR_045390	77855	Mm.410760	NR_045390	ENSMUSG00000090263	D730045A05Rik	-	RIKEN cDNA D730045A05 gene	ncRNA	0.035000	0.487562	45(CTTTTTATACTC,+,0.00)
mm_123357.1	chr14	63142598	63142798	-	1	NA	NA	NA	20236	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.020000	0.567164	
mm_84913.1	chr9	79977750	79977950	-	1	NA	NA	NA	32	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.035000	0.562189	
mm_89760.1	chr10	100019187	100019387	+	1	NA	NA	NA	3466	NM_013598	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.010000	0.298507	
mm_74112.1	chr8	123042325	123042525	+	1	NA	NA	NA	-141	NM_001081379	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.120000	0.671642	
mm_66769.1	chr7	46732496	46732696	-	1	NA	NA	NA	7	NM_011316	20211	Mm.3489	NM_011316	ENSMUSG00000040017	Saa4	Saa-4|Saa-5	serum amyloid A 4	protein-coding	0.010000	0.482587	-28(GGATTTAAAAGC,-,0.00)
mm_141219.1	chr17	27204302	27204502	-	1	NA	NA	NA	36	NM_146075	224640	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	0.135000	0.766169	
mm_48899.1	chr6	3201185	3201385	+	1	NA	NA	NA	-87234	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.065000	0.557214	
mm_104329.1	chr11	93988739	93988939	-	1	NA	NA	NA	-7252	NM_001199203	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.025000	0.487562	
mm_48227.1	chr5	137650464	137650664	-	1	NA	NA	NA	-4850	NM_010571	16369	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	0.020000	0.378109	
mm_45257.1	chr5	63827720	63827920	-	1	NA	NA	NA	15325	NM_029554	76261	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.010000	0.547264	-36(TACTATAAAAGG,-,0.00)
mm_39779.1	chr5	30155226	30155426	+	1	NA	NA	NA	73	NM_001289798	231086	Mm.291463	NM_145558	ENSMUSG00000059447	Hadhb	4930479F15Rik|Mtpb|TP-beta	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit	protein-coding	0.110000	0.656716	
mm_71589.1	chr8	54954842	54955042	+	1	NA	NA	NA	214	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.015000	0.467662	
mm_44799.1	chr5	32820599	32820799	-	1	NA	NA	NA	33531	NM_194340	215476	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	0.015000	0.567164	
mm_150771.1	chr19	44294046	44294246	+	1	NA	NA	NA	470	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.040000	0.487562	
mm_114653.1	chr13	77876330	77876530	+	1	NA	NA	NA	-148472	NM_029315	75507	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding	0.010000	0.422886	40(GGCTTTATATGG,-,0.00),42(CTTTATATGGCT,+,0.00)
mm_49158.1	chr6	13069787	13069987	+	1	NA	NA	NA	128	NM_027992	71900	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	0.120000	0.746269	
mm_144791.1	chr18	35942289	35942489	+	1	NA	NA	NA	-22441	NM_028707	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.020000	0.572139	
mm_70984.1	chr8	27260307	27260507	+	1	NA	NA	NA	80	NM_007918	13685	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0.110000	0.756219	
mm_50828.1	chr6	54679305	54679505	+	1	NA	NA	NA	-2219	NM_001289741	68235	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.015000	0.517413	-88(GAATATAAAGGG,-,0.00)
mm_88526.1	chr10	78069261	78069461	+	1	NA	NA	NA	-7	NM_015790	50723	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.085000	0.686567	
mm_72440.1	chr8	83155707	83155907	+	1	NA	NA	NA	-9545	NM_001111304	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.010000	0.452736	
mm_43571.1	chr5	137705267	137705467	+	1	NA	NA	NA	-20614	NM_001303266	231801	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	0.020000	0.492537	
mm_138405.1	chr17	35065253	35065453	+	1	NA	NA	NA	831	NM_001033221	106722	Mm.390956	NM_001033221	ENSMUSG00000073414	G6b	AU023871|C6orf25|Ng31	immunoreceptor tyrosine-based inhibitory motif (ITIM) containing platelet receptor	protein-coding	0.070000	0.656716	
mm_127042.1	chr15	96641535	96641735	+	1	NA	NA	NA	327	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.045000	0.621891	
mm_129274.1	chr15	77022540	77022740	-	1	NA	NA	NA	87	NM_001164048	17189	Mm.404074	NM_013593	ENSMUSG00000018893	Mb	AI325109	myoglobin	protein-coding	0.005000	0.562189	-33(AGGTATAAAAGC,-,0.00)
mm_37110.1	chr4	116640947	116641147	-	1	NA	NA	NA	10627	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.015000	0.512438	
mm_147906.1	chr18	65393783	65393983	-	1	NA	NA	NA	5	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.015000	0.462687	
mm_143371.1	chr17	67632406	67632606	-	1	NA	NA	NA	217	NM_001033340	240131	Mm.295736	NM_001033340	ENSMUSG00000073375	Lrrc30	Gm326	leucine rich repeat containing 30	protein-coding	0.035000	0.552239	
mm_114875.1	chr13	94167092	94167292	+	1	NA	NA	NA	109396	NM_172589	218454	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.000000	0.477612	58(GAGTTTAAATGG,-,0.00),60(GTTTAAATGGGC,+,0.00)
mm_9960.1	chr1	191096154	191096354	-	1	NA	NA	NA	-2160	NM_030060	381319	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.005000	0.492537	
mm_9227.1	chr1	171240012	171240212	-	1	NA	NA	NA	-5763	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.015000	0.502488	
mm_73276.1	chr8	104624415	104624615	+	1	NA	NA	NA	-119	NM_001252628	12556	Mm.19423	NM_007663	ENSMUSG00000031881	Cdh16	-	cadherin 16	protein-coding	0.000000	0.532338	
mm_121388.1	chr14	118971799	118971999	+	1	NA	NA	NA	33967	NM_008929	100037258	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.015000	0.517413	
mm_143912.1	chr17	85612959	85613159	-	1	NA	NA	NA	5337	NR_038084	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.040000	0.557214	
mm_78735.1	chr9	41584313	41584513	+	1	NA	NA	NA	2487	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA	0.005000	0.378109	-38(CTTTTTAAAAAG,+,0.00),-38(CTTTTTAAAAAG,-,0.00)
mm_50579.1	chr6	49052961	49053161	+	1	NA	NA	NA	16543	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.000000	0.442786	
mm_78649.1	chr9	40327157	40327357	+	1	NA	NA	NA	-6215	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.010000	0.512438	
mm_50617.1	chr6	49827442	49827642	+	1	NA	NA	NA	4832	NM_023456	109648	Mm.154796	NM_023456	ENSMUSG00000029819	Npy	0710005A05Rik	neuropeptide Y	protein-coding	0.005000	0.437811	
mm_256.1	chr1	20669782	20669982	+	1	NA	NA	NA	0	NR_131249	105661730	Mm.137893	NR_131249		Linc-md1	-	long intergenic non-coding RNA muscle differentiation 1	ncRNA	0.010000	0.402985	-65(CTCTATAAATAG,-,0.00),-35(GCCTATTTAAAA,-,0.00),-33(CTATTTAAAAGG,-,0.00)
mm_45771.1	chr5	87091064	87091264	-	1	NA	NA	NA	1391	NM_001029867	231396	Mm.439851	NM_001029867	ENSMUSG00000070704	Ugt2b36	-	UDP glucuronosyltransferase 2 family, polypeptide B36	protein-coding	0.000000	0.243781	-25(TCCTTTAAAAAC,-,0.00),-24(CCTTTAAAAACA,+,0.00)
mm_7469.1	chr1	120485801	120486001	-	1	NA	NA	NA	19183	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.005000	0.532338	
mm_107534.1	chr12	40556149	40556349	+	1	NA	NA	NA	110196	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.020000	0.393035	
mm_52095.1	chr6	97850586	97850786	+	1	NA	NA	NA	43628	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.412935	
mm_144983.1	chr18	38228455	38228655	+	1	NA	NA	NA	-18793	NM_029357	75599	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.015000	0.472637	-35(GAGTATAAATAG,-,0.00)
mm_62536.1	chr7	102250138	102250338	+	1	NA	NA	NA	-120	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.085000	0.741294	
mm_21491.1	chr2	163375320	163375520	-	1	NA	NA	NA	22553	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	0.015000	0.512438	
mm_82205.1	chr9	124102360	124102560	+	1	NA	NA	NA	277	NM_009915	12772	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.005000	0.442786	
mm_482.1	chr1	36761664	36761864	+	1	NA	NA	NA	-34	NM_009539	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.040000	0.527363	
mm_85976.1	chr9	112164258	112164458	-	1	NA	NA	NA	21591	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.000000	0.353234	23(CCTTTTAAATTT,+,0.00)
mm_33240.1	chr4	127023394	127023594	+	1	NA	NA	NA	2193	NM_023603	71514	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|OTTMUSG00000009329|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.020000	0.427861	
mm_30030.1	chr3	135689680	135689880	-	1	NA	NA	NA	1767	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.015000	0.402985	-33(GAATTTAAAAAG,-,0.00)
mm_170105.1	chr17	39844623	39844823	+	1	NA	NA	NA	1726	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.110000	0.701493	
mm_100164.1	chr11	116434143	116434343	+	1	NA	NA	NA	30	NR_003376	664849	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	0.175000	0.761194	
mm_114551.1	chr13	74009342	74009542	+	1	NA	NA	NA	23	NM_182839	72948	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0.120000	0.731343	
mm_47282.1	chr5	122103787	122103987	-	1	NA	NA	NA	2907	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.035000	0.487562	
mm_128441.1	chr15	50722470	50722670	-	1	NA	NA	NA	166479	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.005000	0.283582	-33(GCTTTTATATAA,+,0.00)
mm_137556.1	chr17	27655457	27655657	+	1	NA	NA	NA	-34	NM_011861	23969	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.150000	0.741294	
mm_69568.1	chr7	135700661	135700861	-	1	NA	NA	NA	15618	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.412935	
mm_65236.1	chr7	19759998	19760198	-	1	NA	NA	NA	10434	NM_020486	57278	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	0.020000	0.522388	
mm_170670.1	chr2	119802965	119803165	+	1	NA	NA	NA	3551	NM_019392	22174	Mm.2901	NM_019392	ENSMUSG00000027298	Tyro3	AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1	TYRO3 protein tyrosine kinase 3	protein-coding	0.005000	0.616915	
mm_140466.1	chr17	93198921	93199121	+	1	NA	NA	NA	4	NM_001315503	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.035000	0.393035	
mm_45100.1	chr5	44648283	44648483	-	1	NA	NA	NA	151363	NM_001347349	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0.005000	0.422886	
mm_26815.1	chr3	10301086	10301286	-	1	NA	NA	NA	-3	NM_029310	75497	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.020000	0.537313	
mm_4147.1	chr1	170998480	170998680	+	1	NA	NA	NA	-20346	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.030000	0.507463	
mm_63743.1	chr7	130936113	130936313	+	1	NA	NA	NA	10	NM_019564	56213	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	0.120000	0.676617	
mm_129582.1	chr15	79741257	79741457	-	1	NA	NA	NA	1179	NM_194342	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.005000	0.542289	-35(TACCTTATAAGG,-,0.00),-33(CCTTATAAGGAC,+,0.00)
mm_50751.1	chr6	53287202	53287402	+	1	NA	NA	NA	-1	NM_001327821	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.055000	0.512438	
mm_166928.1	chr7	33605969	33606169	-	1	NA	NA	NA	47212	NR_045685	353109	Mm.63867	NR_045685	ENSMUSG00000083896	Scgb2b23-ps	1700028O08Rik|Abpbg23-ps|C2y|Scgb2b1|Scgb2b1-ps	secretoglobin, family 2B, member 23, pseudogene	pseudo	0.000000	0.492537	
mm_166776.1	chr6	136828369	136828569	+	1	NA	NA	NA	-253	NM_021714	60321	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	0.040000	0.452736	
mm_46328.1	chr5	100845640	100845840	-	1	NA	NA	NA	-489	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|Gpat3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding	0.050000	0.522388	35(TCCTTTATAGAC,+,0.00),49(TGCTTTAAAAGG,-,0.00),50(GCTTTAAAAGGG,+,0.00),51(CTTTAAAAGGGC,+,0.00)
mm_33597.1	chr4	132568321	132568521	+	1	NA	NA	NA	4354	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.015000	0.452736	
mm_99281.1	chr11	101316138	101316338	+	1	NA	NA	NA	-13	NM_011192	19192	Mm.288477	NM_011192	ENSMUSG00000078652	Psme3	AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	protein-coding	0.115000	0.701493	
mm_83649.1	chr9	49505424	49505624	-	1	NA	NA	NA	-12764	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.020000	0.497512	
mm_62530.1	chr7	102239347	102239547	+	1	NA	NA	NA	10671	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.010000	0.512438	
mm_137808.1	chr17	30004712	30004912	+	1	NA	NA	NA	-275	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.135000	0.781095	
mm_5603.1	chr1	39571061	39571261	-	1	NA	NA	NA	6186	NM_001033135	67702	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4|OTTMUSG00000026591	ring finger protein 149	protein-coding	0.005000	0.278607	
mm_66580.1	chr7	45340627	45340827	-	1	NA	NA	NA	5458	NM_010473	15464	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.050000	0.572139	
mm_34611.1	chr4	150286414	150286614	+	1	NA	NA	NA	4598	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.005000	0.407960	
mm_119710.1	chr14	53845214	53845414	+	1	NA	NA	NA	408615	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.452736	
mm_162632.1	chr1	188262801	188263001	+	1	NA	NA	NA	63	NM_021408	22283	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Usherin|Ushrn	Usher syndrome 2A	protein-coding	0.015000	0.482587	
mm_78544.1	chr9	35305283	35305483	+	1	NA	NA	NA	24278	NR_040715	71133	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.020000	0.363184	
mm_98831.1	chr11	97415487	97415687	+	1	NA	NA	NA	-34573	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.080000	0.726368	
mm_90271.1	chr10	122681066	122681266	+	1	NA	NA	NA	1851	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.015000	0.641791	
mm_47425.1	chr5	123171923	123172123	-	1	NA	NA	NA	10663	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.040000	0.577114	
mm_156161.1	chrX	129994380	129994580	+	1	NA	NA	NA	244738	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.005000	0.378109	
mm_108023.1	chr12	73618544	73618744	+	1	NA	NA	NA	33848	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.015000	0.328358	
mm_64890.1	chr7	15922270	15922470	-	1	NA	NA	NA	1	NM_009156	20364	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0.090000	0.666667	
mm_127504.1	chr15	101447683	101447883	+	1	NA	NA	NA	38	NM_025487	66322	Mm.158111	NM_025487	ENSMUSG00000063971	Krt88	1700011A15Rik	keratin 88	protein-coding	0.005000	0.517413	
mm_32636.1	chr4	115000139	115000339	+	1	NA	NA	NA	121	NM_001304555	20460	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	0.105000	0.666667	
mm_15106.1	chr2	153368712	153368912	+	1	NA	NA	NA	22673	NM_001039939	228790	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0.010000	0.412935	
mm_62794.1	chr7	112687124	112687324	+	1	NA	NA	NA	7904	NM_009346	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.010000	0.407960	
mm_161077.1	chr12	81421810	81422010	-	1	NA	NA	NA	129	NM_009620	11498	Mm.408462	NM_009620	ENSMUSG00000072972	Adam4	AV274654|tMDCV	a disintegrin and metallopeptidase domain 4	protein-coding	0.000000	0.492537	
mm_46253.1	chr5	99252717	99252917	-	1	NA	NA	NA	110	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.085000	0.656716	
mm_20130.1	chr2	121314633	121314833	-	1	NA	NA	NA	19279	NM_001173506	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.000000	0.358209	
mm_103053.1	chr11	69817651	69817851	-	1	NA	NA	NA	689	NM_175368	108803	Mm.73263	NM_175368	ENSMUSG00000044084	4933402P03Rik	-	RIKEN cDNA 4933402P03 gene	protein-coding	0.035000	0.577114	
mm_104987.1	chr11	100265841	100266041	-	1	NA	NA	NA	3930	NM_212483	68239	Mm.158190	NM_212483	ENSMUSG00000053654	Krt42	2410039E07Rik|K17n|Ka22|ecat6	keratin 42	protein-coding	0.030000	0.537313	
mm_45311.1	chr5	65434787	65434987	-	1	NA	NA	NA	955	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.005000	0.442786	
mm_34840.1	chr4	155396987	155397187	+	1	NA	NA	NA	982	NM_008072	14403	Mm.388925	NM_008072	ENSMUSG00000029054	Gabrd	AI853201	gamma-aminobutyric acid (GABA) A receptor, subunit delta	protein-coding	0.015000	0.517413	-23(CCTCTAAAGGAC,+,0.00)
mm_25805.1	chr3	127789706	127789906	+	1	NA	NA	NA	-107	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.045000	0.621891	
mm_53338.1	chr6	129237203	129237403	+	1	NA	NA	NA	742	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.005000	0.422886	
mm_81840.1	chr9	118485058	118485258	+	1	NA	NA	NA	6969	NM_010136	13813	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	0.025000	0.437811	
mm_88088.1	chr10	68277389	68277589	+	1	NA	NA	NA	1237	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.020000	0.303483	84(GTATATTAAAGC,-,0.00)
mm_52640.1	chr6	117175078	117175278	+	1	NA	NA	NA	6643	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.005000	0.457711	
mm_172974.1	chr9	9299024	9299224	-	1	NA	NA	NA	-60111	NM_027823	71544	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0.025000	0.467662	
mm_1458.1	chr1	67230800	67231000	+	1	NA	NA	NA	107873	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.000000	0.318408	-70(ACTTATATAGTC,+,0.00)
mm_171106.1	chr3	133544984	133545184	+	1	NA	NA	NA	-694	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.075000	0.621891	
mm_77900.1	chr9	7348624	7348824	+	1	NA	NA	NA	1350	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.015000	0.457711	
mm_137738.1	chr17	29360832	29361032	+	1	NA	NA	NA	18	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.010000	0.582090	
mm_43848.1	chr5	143269964	143270164	+	1	NA	NA	NA	-42	NM_017467	54201	Mm.6666	NM_017467	ENSMUSG00000046658	Zfp316	Emzf1|Mzf3|Znf316	zinc finger protein 316	protein-coding	0.105000	0.686567	
mm_29537.1	chr3	116711680	116711880	-	1	NA	NA	NA	500	NM_144902	229782	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	0.055000	0.646766	
mm_157200.1	chrX	12160408	12160608	-	1	NA	NA	NA	-153	NM_001168321	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.065000	0.606965	
mm_44620.1	chr5	25533191	25533391	-	1	NA	NA	NA	3273	NR_027388	73571	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0.010000	0.512438	
mm_76516.1	chr8	87470199	87470399	-	1	NA	NA	NA	2293	NM_019626	12404	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0.060000	0.592040	
mm_74934.1	chr8	25785085	25785285	-	1	NA	NA	NA	24	NM_026121	67384	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	0.130000	0.726368	
mm_54165.1	chr6	23132810	23133010	-	1	NA	NA	NA	76	NM_013930	30956	Mm.18651	NM_013930	ENSMUSG00000029695	Aass	LKR|LKR/SDH|LOR|LOR/SDH|Lorsdh|SDH	aminoadipate-semialdehyde synthase	protein-coding	0.030000	0.587065	
mm_71419.1	chr8	46490825	46491025	+	1	NA	NA	NA	-41	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.015000	0.547264	
mm_31835.1	chr4	70625114	70625314	+	1	NA	NA	NA	-90286	NM_172694	230316	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.010000	0.467662	
mm_33499.1	chr4	130825772	130825972	+	1	NA	NA	NA	33335	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.015000	0.597015	
mm_132529.1	chr16	37834502	37834702	+	1	NA	NA	NA	-33798	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.010000	0.253731	
mm_131270.1	chr16	10960761	10960961	+	1	NA	NA	NA	32260	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.020000	0.537313	-43(CCCCCTAAAAGA,-,0.00)
mm_84082.1	chr9	58202188	58202388	-	1	NA	NA	NA	-3	NM_001161536	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.040000	0.552239	
mm_137059.1	chr17	17939493	17939693	+	1	NA	NA	NA	-30865	NM_008042	14294	Mm.378918	NM_008042	ENSMUSG00000079700	Fpr3	ALX|Fpr-rs1|Fpr-s1|Fprl1|LXA4-R|Lxa4r	formyl peptide receptor 3	protein-coding	0.005000	0.442786	
mm_82098.1	chr9	123060469	123060669	+	1	NA	NA	NA	25828	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.000000	0.393035	
mm_19341.1	chr2	90745128	90745328	-	1	NA	NA	NA	-142	NM_018828	55935	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0.040000	0.487562	
mm_40079.1	chr5	34369800	34370000	+	1	NA	NA	NA	-33	NM_001243123	231128	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	0.120000	0.756219	
mm_46012.1	chr5	90890375	90890575	-	1	NA	NA	NA	-770	NM_008176	14825	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.005000	0.398010	-35(AGATATAAAAGG,-,0.00)
mm_18533.1	chr2	64096617	64096817	-	1	NA	NA	NA	1321	NM_001267846	60344	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.005000	0.313433	-63(CTTTTTAAACAT,+,0.00)
mm_22826.1	chr3	27241456	27241656	+	1	NA	NA	NA	58552	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.060000	0.577114	
mm_11049.1	chr2	27170438	27170638	+	1	NA	NA	NA	5031	NM_138942	13166	Mm.167781	NM_138942	ENSMUSG00000000889	Dbh	-	dopamine beta hydroxylase	protein-coding	0.035000	0.562189	
mm_172106.1	chr6	3200676	3200876	+	1	NA	NA	NA	-87743	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.055000	0.537313	
mm_104044.1	chr11	86352018	86352218	-	1	NA	NA	NA	5407	NM_001080931	327987	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0.015000	0.388060	
mm_115206.1	chr13	109142686	109142886	+	1	NA	NA	NA	-181958	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.005000	0.333333	
mm_1377.1	chr1	66700769	66700969	+	1	NA	NA	NA	38	NM_001310644	66646	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0.090000	0.701493	
mm_111282.1	chr12	85351041	85351241	-	1	NA	NA	NA	-11779	NM_145138	217718	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.010000	0.522388	
mm_61679.1	chr7	80993578	80993778	+	1	NA	NA	NA	-6	NM_178707	233410	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	8430405N24|A730014M16Rik|Znf592|mKIAA0211	zinc finger protein 592	protein-coding	0.170000	0.845771	
mm_118572.1	chr14	19277882	19278082	+	1	NA	NA	NA	324605	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.005000	0.422886	-29(TCCTATAAAGGG,+,0.00),-29(TCCTATAAAGGG,-,0.00)
mm_43989.1	chr5	146706541	146706741	+	1	NA	NA	NA	88315	NM_011669	22217	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.035000	0.502488	
mm_103187.1	chr11	70615482	70615682	-	1	NA	NA	NA	-312	NM_001145537	668433	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.060000	0.636816	
mm_121868.1	chr14	20734432	20734632	-	1	NA	NA	NA	30	NM_010811	17423	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0.095000	0.761194	
mm_140497.1	chr17	3557719	3557919	-	1	NA	NA	NA	-5	NR_045303	68230	Mm.431352	NR_045302		1700102H20Rik	-	RIKEN cDNA 1700102H20 gene	ncRNA	0.065000	0.616915	
mm_126274.1	chr15	79144529	79144729	+	1	NA	NA	NA	3304	NM_027231	69833	Mm.279861	NM_027231	ENSMUSG00000033020	Polr2f	1810060D16Rik|RPB6	polymerase (RNA) II (DNA directed) polypeptide F	protein-coding	0.060000	0.582090	
mm_13750.1	chr2	118125634	118125834	+	1	NA	NA	NA	13858	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.005000	0.522388	
mm_86754.1	chr10	19606152	19606352	+	1	NA	NA	NA	14303	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.025000	0.402985	-26(CCATTTAGATCC,+,0.00)
mm_164471.1	chr16	67620553	67620753	-	1	NA	NA	NA	255	NM_001347247	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.065000	0.686567	
mm_130018.1	chr15	88708254	88708454	-	1	NA	NA	NA	25865	NM_001033274	223770	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	0.010000	0.542289	
mm_117111.1	chr13	60177296	60177496	-	1	NA	NA	NA	139	NM_008086	14451	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	0.100000	0.606965	0(GTATTTAAAGCC,+,0.00)
mm_158466.1	chrX	140956551	140956751	-	1	NA	NA	NA	60	NM_016883	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	0.035000	0.487562	
mm_162030.1	chr19	53389900	53390100	-	1	NA	NA	NA	573	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	0.115000	0.696517	
mm_14730.1	chr2	144270483	144270683	+	1	NA	NA	NA	-11	NM_024225	69178	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	0.140000	0.796020	
mm_172693.1	chr8	60736417	60736617	-	1	NA	NA	NA	80960	NM_001177882	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	0.040000	0.492537	
mm_35010.1	chr4	3454259	3454459	-	1	NA	NA	NA	-82731	NR_037306	100499523		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0.005000	0.373134	
mm_35946.1	chr4	53113274	53113474	-	1	NA	NA	NA	46521	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.010000	0.452736	
mm_70025.1	chr7	142576142	142576342	-	1	NA	NA	NA	905	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.020000	0.562189	
mm_76925.1	chr8	105936742	105936942	-	1	NA	NA	NA	1550	NM_013640	19171	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0.030000	0.557214	
mm_35530.1	chr4	41313333	41313533	-	1	NA	NA	NA	1468	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.025000	0.487562	
mm_157103.1	chrX	9437586	9437786	-	1	NA	NA	NA	31638	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.343284	-37(CTTTTTAAATAG,+,0.00)
mm_78985.1	chr9	45390701	45390901	+	1	NA	NA	NA	-8908	NR_028499	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.025000	0.577114	
mm_60148.1	chr7	38186158	38186358	+	1	NA	NA	NA	2471	NM_028166	72244	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0.000000	0.417910	
mm_48020.1	chr5	136171513	136171713	-	1	NA	NA	NA	-957	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.030000	0.517413	
mm_56133.1	chr6	87690736	87690936	-	1	NA	NA	NA	11	NR_045482	613264	Mm.480195	NR_045482	ENSMUSG00000089997	1810020O05Rik	-	Riken cDNA 1810020O05 gene	ncRNA	0.010000	0.492537	
mm_3432.1	chr1	150101090	150101290	+	1	NA	NA	NA	1159	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.477612	
mm_57652.1	chr6	128438553	128438753	-	1	NA	NA	NA	-22	NM_010219	14228	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	59kDa|AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	0.175000	0.800995	
mm_101827.1	chr11	47240612	47240812	-	1	NA	NA	NA	138590	NM_011891	24052	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.000000	0.373134	
mm_67493.1	chr7	80748782	80748982	-	1	NA	NA	NA	54449	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.025000	0.577114	
mm_20853.1	chr2	148396929	148397129	-	1	NA	NA	NA	1652	NM_009219	20608	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0.020000	0.507463	
mm_26046.1	chr3	135607290	135607490	+	1	NA	NA	NA	84157	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.030000	0.477612	
mm_140379.1	chr17	87078161	87078361	+	1	NA	NA	NA	-29418	NM_019654	56468	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0.030000	0.467662	
mm_106239.1	chr11	117779518	117779718	-	1	NA	NA	NA	1003	NM_181321	217353	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.045000	0.592040	
mm_110049.1	chr12	17737151	17737351	-	1	NA	NA	NA	46437	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.010000	0.567164	
mm_76139.1	chr8	81491784	81491984	-	1	NA	NA	NA	149322	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.010000	0.358209	60(GTGTCTAAAAGT,-,0.00)
mm_15300.1	chr2	155385837	155386037	+	1	NA	NA	NA	4081	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.045000	0.651741	-64(CCCTATAGACAG,+,0.00)
mm_12206.1	chr2	66440781	66440981	+	1	NA	NA	NA	1	NR_033495	100038743	Mm.330264	NR_033495		Gm13629	OTTMUSG00000013098	predicted gene 13629	ncRNA	0.025000	0.477612	
mm_35870.1	chr4	49536514	49536714	-	1	NA	NA	NA	12932	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.005000	0.402985	
mm_123344.1	chr14	63138391	63138591	-	1	NA	NA	NA	16029	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.537313	
mm_153176.1	chr19	34493779	34493979	-	1	NA	NA	NA	-18744	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.015000	0.383085	
mm_125322.1	chr15	38301106	38301306	+	1	NA	NA	NA	-495	NM_001289471	21847	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.090000	0.656716	
mm_64158.1	chr7	141356022	141356222	+	1	NA	NA	NA	8988	NR_033532	320871	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0.020000	0.636816	
mm_53626.1	chr6	140490969	140491169	+	1	NA	NA	NA	66970	NM_144920	109135	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.035000	0.527363	
mm_32939.1	chr4	119294083	119294283	+	1	NA	NA	NA	330	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.170000	0.791045	
mm_165706.1	chr3	97651805	97652005	+	1	NA	NA	NA	-6307	NM_182997	108097	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.015000	0.507463	
mm_22981.1	chr3	32818246	32818446	+	1	NA	NA	NA	720	NM_001013024	72607	Mm.316153	NM_001013024	ENSMUSG00000056900	Usp13	2700071E21Rik|AI848077|ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding	0.015000	0.472637	
mm_46672.1	chr5	109015595	109015795	-	1	NA	NA	NA	-9259	NM_009491	22307	Mm.261598	NM_009491	ENSMUSG00000067010	Vmn2r10	V2r16|VR16	vomeronasal 2, receptor 10	protein-coding	0.005000	0.308458	
mm_106886.1	chr12	8011998	8012198	+	1	NA	NA	NA	34421	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.442786	
mm_36412.1	chr4	78078344	78078544	-	1	NA	NA	NA	133451	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.333333	
mm_89424.1	chr10	90918064	90918264	+	1	NA	NA	NA	88321	NM_001347053	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.015000	0.308458	
mm_76018.1	chr8	74994174	74994374	-	1	NA	NA	NA	624	NM_178017	70823	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0.100000	0.646766	
mm_125151.1	chr15	30646779	30646979	+	1	NA	NA	NA	-392247	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.165000	0.805970	
mm_56530.1	chr6	99523231	99523431	-	1	NA	NA	NA	-2338	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.040000	0.532338	
mm_27561.1	chr3	58576467	58576667	-	1	NA	NA	NA	-91	NM_001040396	69227	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	0.060000	0.582090	87(AGATATAAAAGG,-,0.00)
mm_117832.1	chr13	98316889	98317089	-	1	NA	NA	NA	17	NM_001170540	218490	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	0.115000	0.656716	
mm_163397.1	chr12	70219345	70219545	+	1	NA	NA	NA	8238	NM_133198	110095	Mm.256926	NM_133198	ENSMUSG00000021069	Pygl	-	liver glycogen phosphorylase	protein-coding	0.010000	0.472637	
mm_152080.1	chr19	6858076	6858276	-	1	NA	NA	NA	35	NM_001081291	78317	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.015000	0.636816	
mm_9280.1	chr1	171634400	171634600	-	1	NA	NA	NA	7400	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.005000	0.363184	8(CCTTTTATATTT,+,0.00),27(GCCTTTATAGAC,+,0.00),27(GCCTTTATAGAC,-,0.00)
mm_10088.1	chr2	3118433	3118633	+	1	NA	NA	NA	145	NM_001081161	269233	Mm.23044	NM_001081161	ENSMUSG00000050530	Fam171a1	9630050M13Rik|AA409679	family with sequence similarity 171, member A1	protein-coding	0.145000	0.756219	
mm_139112.1	chr17	47385291	47385491	+	1	NA	NA	NA	-2	NM_146079	107477	Mm.59151	NM_146079	ENSMUSG00000023979	Guca1b	BC018258|GCAP2	guanylate cyclase activator 1B	protein-coding	0.030000	0.562189	83(CTTTCTAAAAGC,-,0.00)
mm_9846.1	chr1	184732039	184732239	-	1	NA	NA	NA	354	NM_008250	15284	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.080000	0.686567	
mm_45201.1	chr5	52566188	52566388	-	1	NA	NA	NA	18	NM_001310604	246316	Mm.44721	NM_144945	ENSMUSG00000039252	Lgi2	mKIAA1916	leucine-rich repeat LGI family, member 2	protein-coding	0.150000	0.805970	
mm_42846.1	chr5	122171418	122171618	+	1	NA	NA	NA	13239	NM_013636	19047	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	0.015000	0.567164	
mm_108333.1	chr12	80113300	80113500	+	1	NA	NA	NA	-387	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.065000	0.611940	
mm_135230.1	chr16	36874734	36874934	-	1	NA	NA	NA	-8	NM_134111	106389	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0.040000	0.512438	
mm_92017.1	chr10	62342644	62342844	-	1	NA	NA	NA	2137	NR_038038	70162	Mm.441212	NR_038038		Hk1os	2210417K05Rik	hexokinase 1, opposite strand	ncRNA	0.015000	0.582090	1(GCTTATCTGGCC,+,0.00)
mm_150229.1	chr19	33970724	33970924	+	1	NA	NA	NA	9576	NM_026334	67717	Mm.329816	NM_026334	ENSMUSG00000024768	Lipf	2310051B21Rik|AV082900	lipase, gastric	protein-coding	0.015000	0.383085	
mm_146680.1	chr18	12819772	12819972	-	1	NA	NA	NA	35	NR_045524	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.010000	0.407960	
mm_21514.1	chr2	163627861	163628061	-	1	NA	NA	NA	-16889	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.015000	0.432836	75(CCTTATATATTC,+,0.00)
mm_37448.1	chr4	123387257	123387457	-	1	NA	NA	NA	24554	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.010000	0.393035	
mm_6762.1	chr1	84105512	84105712	-	1	NA	NA	NA	113349	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.457711	
mm_39415.1	chr5	15934285	15934485	+	1	NA	NA	NA	-306	NM_001110843	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.125000	0.701493	
mm_32763.1	chr4	116690585	116690785	+	1	NA	NA	NA	-4663	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.025000	0.398010	
mm_48521.1	chr5	142903199	142903399	-	1	NA	NA	NA	3455	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.020000	0.447761	
mm_24875.1	chr3	95982712	95982912	+	1	NA	NA	NA	-2698	NR_045872	668224	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0.020000	0.497512	
mm_44005.1	chr5	146948658	146948858	+	1	NA	NA	NA	101	NM_025652	66596	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0.150000	0.721393	
mm_9110.1	chr1	170111096	170111296	-	1	NA	NA	NA	-22252	NM_022563	18214	Mm.229249	NM_022563	ENSMUSG00000026674	Ddr2	AW495251|Ntrkr3|tyro10	discoidin domain receptor family, member 2	protein-coding	0.025000	0.487562	
mm_138180.1	chr17	34267377	34267577	+	1	NA	NA	NA	4250	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.030000	0.572139	
mm_160734.1	chr10	78847862	78848062	-	1	NA	NA	NA	-49	NM_146308	258305	Mm.377425	NM_146308	ENSMUSG00000051190	Olfr1356	MOR142-1|MOR142-2_p	olfactory receptor 1356	protein-coding	0.000000	0.388060	-93(TGGTATTAAAGG,-,0.00)
mm_8852.1	chr1	162710370	162710570	-	1	NA	NA	NA	30086	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.015000	0.477612	
mm_75956.1	chr8	71701673	71701873	-	1	NA	NA	NA	27	NM_028189	72297	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	0.060000	0.646766	
mm_38964.1	chr4	150879495	150879695	-	1	NA	NA	NA	24504	NM_133753	74155	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.050000	0.527363	39(GTGTCTAAAAAG,-,0.00)
mm_138596.1	chr17	35517166	35517366	+	1	NA	NA	NA	150	NM_146248	240084	Mm.49544	NM_146248	ENSMUSG00000040312	Cchcr1	Hcr	coiled-coil alpha-helical rod protein 1	protein-coding	0.050000	0.646766	
mm_93337.1	chr10	99759384	99759584	-	1	NA	NA	NA	174	NM_027945	71832	Mm.483162	NM_027945	ENSMUSG00000046934	Csl	1700007H16Rik	citrate synthase like	protein-coding	0.035000	0.472637	
mm_172876.1	chr9	44407631	44407831	+	1	NA	NA	NA	17	NM_024266	75617	Mm.292027	NM_024266	ENSMUSG00000009927	Rps25	2810009D21Rik	ribosomal protein S25	protein-coding	0.060000	0.606965	
mm_105825.1	chr11	113171765	113171965	-	1	NA	NA	NA	29973	NR_015556	72386	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.005000	0.427861	
mm_9774.1	chr1	181093647	181093847	-	1	NA	NA	NA	42510	NM_001033819	619326	Mm.355174	NM_001033819	ENSMUSG00000038768	9130409I23Rik	-	RIKEN cDNA 9130409I23 gene	protein-coding	0.005000	0.407960	
mm_147327.1	chr18	42275091	42275291	-	1	NA	NA	NA	6	NR_033452	100042757	Mm.100172	NR_033452		Gm4013	-	predicted gene 4013	ncRNA	0.080000	0.606965	45(GTCTCTTAAAGG,-,0.00),46(TCTCTTAAAGGG,+,0.00)
mm_127401.1	chr15	101186283	101186483	+	1	NA	NA	NA	-7486	NR_105927	102466774		NR_105927	ENSMUSG00000106563	Mir6962	mmu-mir-6962	microRNA 6962	ncRNA	0.000000	0.417910	
mm_13496.1	chr2	107010789	107010989	+	1	NA	NA	NA	-36492	NM_001025102	212772	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	0.040000	0.507463	
mm_94294.1	chr11	4064818	4065018	+	1	NA	NA	NA	65	NM_001029937	380683	Mm.296806	NM_001029937	ENSMUSG00000054986	Sec14l3	1110069O07Rik	SEC14-like lipid binding 3	protein-coding	0.010000	0.616915	
mm_78057.1	chr9	14900433	14900633	+	1	NA	NA	NA	3418	NM_176807	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.035000	0.577114	
mm_80966.1	chr9	103111784	103111984	+	1	NA	NA	NA	-190	NM_173781	270192	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.175000	0.800995	
mm_126464.1	chr15	81039543	81039743	+	1	NA	NA	NA	61878	NM_134091	105835	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.020000	0.398010	
mm_157247.1	chrX	19146205	19146405	-	1	NA	NA	NA	83	NR_029806	723827		NR_029806	ENSMUSG00000065422	Mir221	Mirn221|mir-221|mmu-mir-221	microRNA 221	ncRNA	0.000000	0.402985	
mm_125601.1	chr15	59695719	59695919	+	1	NA	NA	NA	47165	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.000000	0.432836	
mm_70364.1	chr8	8666476	8666676	+	1	NA	NA	NA	-5803	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.005000	0.323383	-61(GCTTCTAAAAGG,-,0.00)
mm_171833.1	chr5	146666521	146666721	+	1	NA	NA	NA	-81382	NM_001010941	14738	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	0.000000	0.378109	
mm_90205.1	chr10	120461903	120462103	+	1	NA	NA	NA	-13893	NR_030434	791076		NR_030434	ENSMUSG00000076448	Mir763	Mirn763|mir-763|mmu-mir-763	microRNA 763	ncRNA	0.015000	0.577114	
mm_4799.1	chr1	185204138	185204338	+	1	NA	NA	NA	70	NM_001163754	98732	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	0.085000	0.696517	
mm_162738.1	chr10	56388419	56388619	+	1	NA	NA	NA	11219	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.050000	0.522388	
mm_46167.1	chr5	96164074	96164274	-	1	NA	NA	NA	-2184	NM_144910	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.015000	0.472637	
mm_132298.1	chr16	33518098	33518298	+	1	NA	NA	NA	-131	NM_134251	171286	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.010000	0.557214	
mm_134071.1	chr16	8666412	8666612	-	1	NA	NA	NA	5641	NM_025821	52502	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.000000	0.582090	
mm_84685.1	chr9	72111607	72111807	-	1	NA	NA	NA	112	NM_011544	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.120000	0.706468	
mm_17100.1	chr2	23521893	23522093	-	1	NA	NA	NA	50111	NM_029773	76857	Mm.276415	NM_029773	ENSMUSG00000026771	Spopl	4921517N04Rik|AU014935|BB233739|E430033K04Rik	speckle-type POZ protein-like	protein-coding	0.010000	0.218905	
mm_42613.1	chr5	117976682	117976882	+	1	NA	NA	NA	12	NM_001346588	231670	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	0.130000	0.746269	
mm_68911.1	chr7	126458797	126458997	-	1	NA	NA	NA	4176	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.010000	0.517413	
mm_149152.1	chr19	9013323	9013523	+	1	NA	NA	NA	-4481	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.000000	0.452736	
mm_47170.1	chr5	120744057	120744257	-	1	NA	NA	NA	5691	NM_145227	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.000000	0.412935	
mm_46726.1	chr5	110770107	110770307	-	1	NA	NA	NA	510	NM_029337	75560	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	0.140000	0.696517	
mm_104509.1	chr11	95982515	95982715	-	1	NA	NA	NA	-19232	NR_037223	100526468		NR_037223	ENSMUSG00000093358	Mir3063	mmu-mir-3063	microRNA 3063	ncRNA	0.005000	0.512438	
mm_127697.1	chr15	102990773	102990973	+	1	NA	NA	NA	334	NM_010466	15426	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.090000	0.631841	
mm_140784.1	chr17	17910107	17910307	-	1	NA	NA	NA	22383	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.090000	0.646766	
mm_111372.1	chr12	87238664	87238864	-	1	NA	NA	NA	-163	NM_027744	71275	Mm.79198	NM_027744	ENSMUSG00000072919	Noxred1	4933437F05Rik	NADP+ dependent oxidoreductase domain containing 1	protein-coding	0.000000	0.457711	
mm_75744.1	chr8	69882069	69882269	-	1	NA	NA	NA	5223	NM_026818	68709	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	0.170000	0.696517	
mm_56101.1	chr6	87459236	87459436	-	1	NA	NA	NA	30342	NM_009756	12154	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	-	bone morphogenetic protein 10	protein-coding	0.005000	0.373134	
mm_124126.1	chr14	79662061	79662261	-	1	NA	NA	NA	22	NM_001310655	16840	Mm.46561	NM_010701	ENSMUSG00000022025	Cnmd	Bricd3|ChM-I|Chmd|Lect1	chondromodulin	protein-coding	0.010000	0.587065	
mm_11885.1	chr2	49698781	49698981	+	1	NA	NA	NA	79567	NM_008449	16574	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding	0.005000	0.457711	
mm_99018.1	chr11	98907717	98907917	+	1	NA	NA	NA	-72	NM_001025779	23834	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0.075000	0.582090	
mm_156410.1	chrX	140664211	140664411	+	1	NA	NA	NA	-13717	NM_011845	23947	Mm.131097	NM_011845	ENSMUSG00000000266	Mid2	FXY2|Trim1	midline 2	protein-coding	0.005000	0.447761	
mm_47745.1	chr5	130255297	130255497	-	1	NA	NA	NA	133	NM_023248	66711	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	Shwachman-Bodian-Diamond syndrome homolog (human)	protein-coding	0.095000	0.616915	
mm_66038.1	chr7	30650053	30650253	-	1	NA	NA	NA	75	NM_133693	68035	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	0.090000	0.621891	
mm_77088.1	chr8	110790285	110790485	-	1	NA	NA	NA	15539	NM_029646	76527	Mm.77697	NM_029646	ENSMUSG00000031750	Il34	2010004A03Rik|AI593503	interleukin 34	protein-coding	0.015000	0.567164	
mm_14209.1	chr2	127270140	127270340	+	1	NA	NA	NA	11	NM_139308	99138	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0.110000	0.691542	
mm_23.1	chr1	5105230	5105430	+	1	NA	NA	NA	22244	NM_001310442	108664	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	0.000000	0.328358	
mm_15488.1	chr2	157562186	157562386	+	1	NA	NA	NA	2208	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.030000	0.462687	
mm_169433.1	chr14	54314608	54314808	-	1	NA	NA	NA	-31783	NM_010991	18348	Mm.436623	NM_010991	ENSMUSG00000048153	Olfr49	IC6|MOR1181	olfactory receptor 49	protein-coding	0.065000	0.527363	-31(GGCTATAAAAGC,-,0.00)
mm_25582.1	chr3	116866084	116866284	+	1	NA	NA	NA	4504	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.005000	0.442786	
mm_161755.1	chr17	35126984	35127184	+	1	NA	NA	NA	682	NM_033477	114585	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	0.040000	0.507463	
mm_118749.1	chr14	22349667	22349867	+	1	NA	NA	NA	193031	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.000000	0.273632	
mm_71442.1	chr8	46513226	46513426	+	1	NA	NA	NA	22360	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.025000	0.502488	
mm_6606.1	chr1	75370367	75370567	-	1	NA	NA	NA	4548	NR_037976	100503248	Mm.403916	NR_037976	ENSMUSG00000085653	Gm15179	OTTMUSG00000019417	predicted gene 15179	ncRNA	0.015000	0.547264	
mm_24919.1	chr3	96402003	96402203	+	1	NA	NA	NA	12730	NR_001579	21748		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	0.105000	0.651741	
mm_149445.1	chr19	11484271	11484471	+	1	NA	NA	NA	-7667	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.010000	0.398010	
mm_163773.1	chr13	120018138	120018338	+	1	NA	NA	NA	33966	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.010000	0.343284	
mm_5833.1	chr1	52817616	52817816	-	1	NA	NA	NA	-28	NM_008384	16329	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	0.080000	0.716418	
mm_142762.1	chr17	49113430	49113630	-	1	NA	NA	NA	3	NR_038141	69311	Mm.46140	NR_038141	ENSMUSG00000101012	1700008K24Rik	-	RIKEN cDNA 1700008K24 gene	ncRNA	0.015000	0.542289	
mm_127420.1	chr15	101266749	101266949	+	1	NA	NA	NA	3	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.100000	0.701493	
mm_7239.1	chr1	93478765	93478965	-	1	NA	NA	NA	52	NM_133808	110611	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0.085000	0.656716	18(GGCCATATAGAG,-,0.00),20(CCATATAGAGGC,+,0.00)
mm_129581.1	chr15	79741235	79741435	-	1	NA	NA	NA	1201	NM_194342	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.005000	0.547264	-57(TACCTTATAAGG,-,0.00),-55(CCTTATAAGGAC,+,0.00)
mm_64510.1	chr7	143628125	143628325	+	1	NA	NA	NA	-380	NM_175649	244237	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	0.025000	0.502488	
mm_62247.1	chr7	99202314	99202514	+	1	NA	NA	NA	-19701	NM_026384	67800	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	0.020000	0.497512	
mm_64005.1	chr7	140193333	140193533	+	1	NA	NA	NA	9335	NM_001011814	258055	Mm.377339	NM_001011814	ENSMUSG00000050366	Olfr524	MOR103-14P	olfactory receptor 524	protein-coding	0.015000	0.462687	
mm_55940.1	chr6	85000903	85001103	-	1	NA	NA	NA	68510	NM_177077	75914	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	0.005000	0.427861	
mm_57101.1	chr6	122590976	122591176	-	1	NA	NA	NA	11368	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.030000	0.542289	
mm_131050.1	chr16	4036998	4037198	+	1	NA	NA	NA	-47	NM_010061	13419	Mm.291048	NM_010061	ENSMUSG00000005980	Dnase1	AI788650|DNaseI|Dnl1	deoxyribonuclease I	protein-coding	0.015000	0.557214	13(CCTTTAAAACTG,+,0.00)
mm_110905.1	chr12	75735730	75735930	-	1	NA	NA	NA	-101	NM_030750	81535	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.110000	0.656716	
mm_161295.1	chr14	27460823	27461023	+	1	NA	NA	NA	32076	NM_001114879	218850	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0.030000	0.457711	
mm_33086.1	chr4	124657554	124657754	+	1	NA	NA	NA	8	NM_011141	18991	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0.180000	0.835821	
mm_157395.1	chrX	38406752	38406952	-	1	NA	NA	NA	49608	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.000000	0.373134	
mm_29921.1	chr3	131490421	131490621	-	1	NA	NA	NA	-74247	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.120000	0.711443	
mm_76622.1	chr8	91800188	91800388	-	1	NA	NA	NA	1366	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.095000	0.651741	
mm_133449.1	chr16	88608620	88608820	+	1	NA	NA	NA	3559	NM_001163141	239932	Mm.120273	NM_001163141	ENSMUSG00000050239	Krtap24-1	Gm312	keratin associated protein 24-1	protein-coding	0.015000	0.462687	
mm_155509.1	chrX	73966396	73966596	+	1	NA	NA	NA	-139	NM_008224	15161	Mm.491126	NM_008224	ENSMUSG00000031386	Hcfc1	AW060991|HCF|HCF1	host cell factor C1	protein-coding	0.070000	0.601990	
mm_52830.1	chr6	121363132	121363332	+	1	NA	NA	NA	16535	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.020000	0.557214	
mm_143726.1	chr17	81378848	81379048	-	1	NA	NA	NA	-313863	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.005000	0.358209	-82(GTCTTTTAAAGA,-,0.00),-81(TCTTTTAAAGAG,+,0.00)
mm_58313.1	chr6	146289964	146290164	-	1	NA	NA	NA	212159	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.030000	0.447761	-56(TCATTTAAAGGG,+,0.00)
mm_151994.1	chr19	5875137	5875337	-	1	NA	NA	NA	-29	NM_026169	67457	Mm.202092	NM_026169	ENSMUSG00000024816	Frmd8	1200004M23Rik|2310035N23Rik|4931429L16Rik|AU018809	FERM domain containing 8	protein-coding	0.105000	0.666667	
mm_121843.1	chr14	20615417	20615617	-	1	NA	NA	NA	2837	NM_030180	78787	Mm.301173	NM_030180	ENSMUSG00000034235	Usp54	4930429G18Rik|AI115571|C030002J06Rik	ubiquitin specific peptidase 54	protein-coding	0.005000	0.467662	-34(CTGTTTATAAGA,-,0.00)
mm_60661.1	chr7	44986813	44987013	+	1	NA	NA	NA	13	NR_045266	100502630	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	OTTMUSG00000023473	predicted gene 15545	ncRNA	0.025000	0.552239	
mm_127548.1	chr15	102144594	102144794	+	1	NA	NA	NA	508	NM_008344	16012	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	0.090000	0.681592	
mm_157579.1	chrX	52744491	52744691	-	1	NA	NA	NA	2	NR_003188	751866	Mm.381916	NR_003188		Kis2	Kis2-T1|Kis2-T2|Kis2-T3|Kis2-T4|Kis2-T5|Platr24|Xpcl1	Kaplan integration site 2	ncRNA	0.070000	0.641791	-34(GGCTATTAAAGG,-,0.00)
mm_100806.1	chr11	5065203	5065403	-	1	NA	NA	NA	24	NM_144560	78926	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0.130000	0.756219	-81(GCCCCTTTAAGA,-,0.00),-79(CCCTTTAAGAGC,+,0.00),-79(CCCTTTAAGAGC,-,0.00),-78(CCTTTAAGAGCG,+,0.00)
mm_173027.1	chrX	104413662	104413862	-	1	NA	NA	NA	84	NM_009592	11306	Mm.426128	NM_009592	ENSMUSG00000031333	Abcb7	AA517758|AU019072|Abc7	ATP-binding cassette, sub-family B (MDR/TAP), member 7	protein-coding	0.115000	0.626866	
mm_96212.1	chr11	62456506	62456706	+	1	NA	NA	NA	726	NM_177229	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.030000	0.472637	
mm_8278.1	chr1	139982035	139982235	-	1	NA	NA	NA	-123436	NM_001025575	545366	Mm.439660	NM_001025575	ENSMUSG00000033898	Cfhr2	Cfhrb_4/2	complement factor H-related 2	protein-coding	0.000000	0.293532	
mm_114730.1	chr13	83721271	83721471	+	1	NA	NA	NA	-6735	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.020000	0.547264	
mm_18090.1	chr2	44984512	44984712	-	1	NA	NA	NA	38565	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.353234	
mm_144827.1	chr18	36348699	36348899	+	1	NA	NA	NA	175	NM_001081365	66060	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.110000	0.706468	
mm_169360.1	chr14	29968382	29968582	+	1	NA	NA	NA	102	NM_019979	80795	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	0.070000	0.626866	
mm_28208.1	chr3	88334389	88334589	-	1	NA	NA	NA	-56	NM_024246	71913	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	0.025000	0.567164	
mm_155506.1	chrX	73787117	73787317	+	1	NA	NA	NA	74	NM_009279	20832	Mm.831	NM_009279	ENSMUSG00000002014	Ssr4	AW743063|C78062|Trap	signal sequence receptor, delta	protein-coding	0.095000	0.646766	
mm_122522.1	chr14	47277100	47277300	-	1	NA	NA	NA	57	NM_080843	67296	Mm.23957	NM_080843	ENSMUSG00000048379	Socs4	3110032M18Rik|A730004F22Rik|AI427843|AU015727|AU015859|Socs7	suppressor of cytokine signaling 4	protein-coding	0.100000	0.701493	
mm_57494.1	chr6	125313611	125313811	-	1	NA	NA	NA	159	NM_010736	17000	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|CD18|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	0.080000	0.726368	
mm_44284.1	chr5	8162057	8162257	-	1	NA	NA	NA	105615	NM_001080974	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.005000	0.427861	
mm_69610.1	chr7	137195701	137195901	-	1	NA	NA	NA	-38882	NR_045885	100038555	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	ENSMUSG00000073800	predicted gene 10578	ncRNA	0.010000	0.407960	
mm_136941.1	chr17	14260954	14261154	+	1	NA	NA	NA	-18452	NM_022315	64074	Mm.30162	NM_022315	ENSMUSG00000023886	Smoc2	1700056C05Rik|5430426J21Rik|Smoc2l	SPARC related modular calcium binding 2	protein-coding	0.010000	0.532338	
mm_22883.1	chr3	29890920	29891120	+	1	NA	NA	NA	3	NR_110437	102636083		NR_110437	ENSMUSG00000102590	Mannr	Manr	Mecom adjacent non-protein coding RNA	ncRNA	0.020000	0.462687	41(CCCCCTTAAAAG,-,0.00),42(CCCCTTAAAAGC,-,0.00),43(CCCTTAAAAGCT,+,0.00)
mm_47299.1	chr5	122323816	122324016	-	1	NA	NA	NA	30279	NM_144912	231724	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	0.000000	0.263682	
mm_77895.1	chr9	7348480	7348680	+	1	NA	NA	NA	1206	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.373134	
mm_138537.1	chr17	35249005	35249205	+	1	NA	NA	NA	-2184	NR_106169	102465886		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	0.030000	0.562189	
mm_50703.1	chr6	52103869	52104069	+	1	NA	NA	NA	1020	NR_110440	102635415	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|OTTMUSG00000018881|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA	0.030000	0.532338	
mm_7364.1	chr1	106712343	106712543	-	1	NA	NA	NA	1847	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.040000	0.597015	
mm_2180.1	chr1	88551436	88551636	+	1	NA	NA	NA	19	NR_037971	100503197	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.000000	0.512438	
mm_104737.1	chr11	98359371	98359571	-	1	NA	NA	NA	1103	NM_021547	59045	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	0.015000	0.467662	
mm_122401.1	chr14	41004279	41004479	-	1	NA	NA	NA	2541	NM_001316739	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.040000	0.626866	
mm_17345.1	chr2	26604188	26604388	-	1	NA	NA	NA	129	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.120000	0.791045	
mm_55813.1	chr6	83033273	83033473	-	1	NA	NA	NA	98	NM_010070	13448	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.060000	0.606965	
mm_22173.1	chr2	173158978	173159178	-	1	NA	NA	NA	6005	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.005000	0.398010	
mm_12197.1	chr2	65765186	65765386	+	1	NA	NA	NA	-80481	NM_001290666	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding	0.015000	0.358209	
mm_68874.1	chr7	126447085	126447285	-	1	NA	NA	NA	15888	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.020000	0.601990	
mm_143367.1	chr17	67354431	67354631	-	1	NA	NA	NA	-72	NM_008984	19274	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.165000	0.815920	
mm_19135.1	chr2	80304519	80304719	-	1	NA	NA	NA	-10847	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.010000	0.388060	-46(GCCCATAAAAGT,-,0.00),-24(TTTTTAATAGCC,+,0.00)
mm_89608.1	chr10	96019767	96019967	+	1	NA	NA	NA	79204	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.025000	0.442786	
mm_40399.1	chr5	52834076	52834276	+	1	NA	NA	NA	41	NM_024213	52206	Mm.272568	NM_024213	ENSMUSG00000029176	Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding	0.115000	0.701493	
mm_137299.1	chr17	24850390	24850590	+	1	NA	NA	NA	0	NM_024284	14651	Mm.43784	NM_024284	ENSMUSG00000024158	Hagh	BC019817|Glo-2|Glo2|Rsp29	hydroxyacyl glutathione hydrolase	protein-coding	0.065000	0.597015	
mm_7942.1	chr1	133914734	133914934	-	1	NA	NA	NA	6567	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.040000	0.582090	
mm_68716.1	chr7	119896231	119896431	-	1	NA	NA	NA	39	NM_029610	73919	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0.065000	0.656716	
mm_172818.1	chr9	124480641	124480841	-	1	NA	NA	NA	-3879	NR_102716	19054	Mm.271249	NM_011154	ENSMUSG00000093803	Ppp2r3d	PP2A B''-PR59|PP2A PR59|PR59|Ppp2r3|Ppp2r3a	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	protein-coding	0.025000	0.537313	
mm_23663.1	chr3	68493158	68493358	+	1	NA	NA	NA	-923	NM_001282044	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.015000	0.527363	
mm_126322.1	chr15	79739449	79739649	+	1	NA	NA	NA	2987	NM_194342	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.025000	0.562189	
mm_7573.1	chr1	124845914	124846114	-	1	NA	NA	NA	589713	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.020000	0.452736	
mm_145193.1	chr18	49840645	49840845	+	1	NA	NA	NA	7748	NM_001081371	240283	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0.000000	0.472637	
mm_45933.1	chr5	89883203	89883403	-	1	NA	NA	NA	31	NM_177872	330119	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	0.115000	0.731343	
mm_59328.1	chr7	25316999	25317199	+	1	NA	NA	NA	-65	NM_001160400	269878	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	0.060000	0.646766	
mm_118954.1	chr14	27379529	27379729	+	1	NA	NA	NA	18240	NM_001289688	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.045000	0.557214	
mm_173216.1	chrX	73716584	73716784	+	1	NA	NA	NA	87	NM_007435	11666	Mm.365	NM_007435	ENSMUSG00000031378	Abcd1	ALDP|Ald|Aldgh	ATP-binding cassette, sub-family D (ALD), member 1	protein-coding	0.050000	0.636816	
mm_18567.1	chr2	65363831	65364031	-	1	NA	NA	NA	95	NM_177074	320106	Mm.227703	NM_177074	ENSMUSG00000061171	Slc38a11	9330158F14Rik	solute carrier family 38, member 11	protein-coding	0.030000	0.567164	
mm_133717.1	chr16	93676323	93676523	+	1	NA	NA	NA	-6796	NM_173047	109857	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	0.010000	0.512438	
mm_25952.1	chr3	132007386	132007586	+	1	NA	NA	NA	-77806	NM_020265	56811	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.015000	0.467662	
mm_79608.1	chr9	58607383	58607583	+	1	NA	NA	NA	25243	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.005000	0.393035	
mm_136869.1	chr17	12916337	12916537	+	1	NA	NA	NA	108	NM_013686	21454	Mm.229342	NM_013686	ENSMUSG00000068039	Tcp1	AI528772|CCT|Cct1|Ccta|TRic|Tcp-1|Tp63|c-cpn|p63	t-complex protein 1	protein-coding	0.115000	0.671642	
mm_51933.1	chr6	91683519	91683719	+	1	NA	NA	NA	-448	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.040000	0.646766	
mm_79543.1	chr9	57910945	57911145	+	1	NA	NA	NA	59	NM_001122873	69459	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0.095000	0.666667	
mm_30745.1	chr4	14864021	14864221	+	1	NA	NA	NA	-98	NM_028264	72519	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360	transmembrane protein 55A	protein-coding	0.040000	0.661692	
mm_14082.1	chr2	125018794	125018994	+	1	NA	NA	NA	-49233	NM_175034	317750	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0.000000	0.412935	
mm_32515.1	chr4	108632990	108633190	+	1	NA	NA	NA	13134	NM_177045	319965	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	0.015000	0.492537	
mm_138500.1	chr17	35210358	35210558	+	1	NA	NA	NA	-5107	NM_010735	16992	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0.015000	0.512438	
mm_141886.1	chr17	34860791	34860991	-	1	NA	NA	NA	1623	NM_001142706	14962	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0.025000	0.532338	
mm_68032.1	chr7	101301564	101301764	-	1	NA	NA	NA	424	NM_001111111	73683	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.020000	0.562189	
mm_167446.1	chr8	121796573	121796773	+	1	NA	NA	NA	32896	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.030000	0.547264	
mm_22476.1	chr3	5218725	5218925	+	1	NA	NA	NA	271	NM_030708	80892	Mm.41522	NM_030708	ENSMUSG00000025255	Zfhx4	A930021B15|C130041O22Rik|Zfh-4|Zfh4	zinc finger homeodomain 4	protein-coding	0.045000	0.398010	
mm_140138.1	chr17	79737314	79737514	+	1	NA	NA	NA	-22373	NM_009994	13078	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0.025000	0.517413	
mm_1555.1	chr1	73001466	73001666	+	1	NA	NA	NA	14333	NM_009407	21958	Mm.425024	NM_009407	ENSMUSG00000026182	Tnp1	Stp-1|TP1|Tp-1	transition protein 1	protein-coding	0.010000	0.343284	
mm_73215.1	chr8	96105004	96105204	+	1	NA	NA	NA	-216739	NM_010325	14719	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	0.010000	0.378109	
mm_50466.1	chr6	48977045	48977245	+	1	NA	NA	NA	2002	NM_001029987	243376	Mm.244112	NM_001029987	ENSMUSG00000068536	Doxl2	-	diamine oxidase-like protein 2	protein-coding	0.000000	0.432836	-15(GTTTTTATGGCC,+,0.00)
mm_47947.1	chr5	135404748	135404948	-	1	NA	NA	NA	-10302	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.055000	0.587065	
mm_4629.1	chr1	179667929	179668129	+	1	NA	NA	NA	-202	NM_178653	109232	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	0.120000	0.686567	
mm_66210.1	chr7	34313418	34313618	-	1	NA	NA	NA	-27909	NM_172741	233103	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	0.155000	0.791045	
mm_24545.1	chr3	93293230	93293430	+	1	NA	NA	NA	-26419	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.005000	0.268657	
mm_66187.1	chr7	34196048	34196248	-	1	NA	NA	NA	499	NM_026549	68079	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.060000	0.631841	
mm_29638.1	chr3	121815045	121815245	-	1	NA	NA	NA	70	NM_008991	19299	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.130000	0.721393	
mm_99971.1	chr11	113700103	113700303	+	1	NA	NA	NA	9323	NM_026682	52670	Mm.229207	NM_026682	ENSMUSG00000018727	Cpsf4l	0610010C04Rik|1500000C01Rik|D11Ertd636e	cleavage and polyadenylation specific factor 4-like	protein-coding	0.010000	0.318408	
mm_82536.1	chr9	20746258	20746458	-	1	NA	NA	NA	-18144	NM_173777	244723	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.125000	0.810945	
mm_76405.1	chr8	84846766	84846966	-	1	NA	NA	NA	65	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.090000	0.621891	27(CGTCTTAAAAGG,-,0.00),28(GTCTTAAAAGGC,+,0.00),29(TCTTAAAAGGCC,+,0.00)
mm_150023.1	chr19	29372378	29372578	+	1	NA	NA	NA	5040	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.010000	0.383085	
mm_77830.1	chr9	4309670	4309870	+	1	NA	NA	NA	27	NM_001164574	69149	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	0.080000	0.592040	
mm_18920.1	chr2	76742161	76742361	-	1	NA	NA	NA	66946	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.020000	0.457711	
mm_172476.1	chr7	45459970	45460170	+	1	NA	NA	NA	-184	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.055000	0.656716	
mm_9127.1	chr1	170589723	170589923	-	1	NA	NA	NA	26	NM_001109985	70729	Mm.487078	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.165000	0.800995	
mm_6108.1	chr1	64035655	64035855	-	1	NA	NA	NA	6746	NR_105864	102466760		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.015000	0.358209	-69(TCTTTAAAACTG,+,0.00)
mm_71510.1	chr8	46844727	46844927	+	1	NA	NA	NA	105082	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.015000	0.437811	
mm_79289.1	chr9	51213590	51213790	+	1	NA	NA	NA	0	NM_011136	18985	Mm.897	NM_011136	ENSMUSG00000032053	Pou2af1	BOB.1|Bob-1|Bob1|OBF-1|OBF.1|OCA-B|OCAB	POU domain, class 2, associating factor 1	protein-coding	0.030000	0.497512	-33(GGCCTTTAAAAA,-,0.00),-32(GCCTTTAAAAAG,-,0.00),-31(CCTTTAAAAAGC,+,0.00),-30(CTTTAAAAAGCT,+,0.00)
mm_50039.1	chr6	41141188	41141388	+	1	NA	NA	NA	-105779	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.010000	0.412935	
mm_59566.1	chr7	28091707	28091907	+	1	NA	NA	NA	20571	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.035000	0.597015	
mm_48690.1	chr5	146790394	146790594	-	1	NA	NA	NA	4462	NM_011669	22217	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.000000	0.328358	
mm_141355.1	chr17	28689707	28689907	-	1	NA	NA	NA	180	NM_001290320	224661		NM_146076	ENSMUSG00000036196	Slc26a8	-	solute carrier family 26, member 8	protein-coding	0.105000	0.726368	
mm_75908.1	chr8	71381842	71382042	-	1	NA	NA	NA	10	NM_010150	13864	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	0.190000	0.845771	-89(GCCCTTATAAGG,-,0.00),-87(CCTTATAAGGGC,+,0.00)
mm_52986.1	chr6	123264056	123264256	+	1	NA	NA	NA	2049	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.020000	0.542289	
mm_82193.1	chr9	123964956	123965156	+	1	NA	NA	NA	3636	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.005000	0.457711	76(CTCCATAAATGC,-,0.00)
mm_30022.1	chr3	135665321	135665521	-	1	NA	NA	NA	26126	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.020000	0.398010	4(GCTTTTAAGGAT,+,0.00)
mm_43262.1	chr5	130256951	130257151	+	1	NA	NA	NA	14	NM_001015876	100929	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0.040000	0.527363	
mm_146494.1	chr18	3280719	3280919	-	1	NA	NA	NA	313	NM_001311066	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.015000	0.452736	
mm_124218.1	chr14	100284121	100284321	-	1	NA	NA	NA	-134425	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.010000	0.373134	
mm_44317.1	chr5	9480839	9481039	-	1	NA	NA	NA	105235	NR_030537	100124492		NR_030537	ENSMUSG00000077896	Mir879	Mirn879|mir-879|mmu-mir-879	microRNA 879	ncRNA	0.000000	0.318408	
mm_36019.1	chr4	56960338	56960538	-	1	NA	NA	NA	-13009	NM_175518	242474	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	0.015000	0.422886	21(GCTTAAAAAGAA,+,0.00)
mm_138072.1	chr17	33949175	33949375	+	1	NA	NA	NA	2213	NM_019420	54218	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	0.030000	0.572139	
mm_94930.1	chr11	29692867	29693067	+	1	NA	NA	NA	69	NM_194052	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.070000	0.661692	
mm_17455.1	chr2	28556193	28556393	-	1	NA	NA	NA	7110	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.015000	0.527363	
mm_29332.1	chr3	108121085	108121285	-	1	NA	NA	NA	24967	NM_010306	14679	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	0.010000	0.447761	
mm_146094.1	chr18	73863105	73863305	+	1	NA	NA	NA	3820	NM_001305882	71263	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	0.035000	0.472637	
mm_76468.1	chr8	85386133	85386333	-	1	NA	NA	NA	-5192	NM_001297612	213435	Mm.32804	NM_175441	ENSMUSG00000031698	Mylk3	D830007F02Rik|MLCK	myosin light chain kinase 3	protein-coding	0.015000	0.497512	
mm_171508.1	chr4	146270433	146270633	+	1	NA	NA	NA	148	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.025000	0.552239	11(CCTTTTCTGCCG,+,0.00)
mm_18836.1	chr2	74753359	74753559	-	1	NA	NA	NA	775	NR_110447	102634401	Mm.235021	NR_110447	ENSMUSG00000085015	LOC102634401	-	uncharacterized LOC102634401	ncRNA	0.055000	0.592040	
mm_136699.1	chr17	7170050	7170250	+	1	NA	NA	NA	35	NM_011299	20112	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.120000	0.736318	
mm_9861.1	chr1	184811209	184811409	-	1	NA	NA	NA	-9	NM_001290273	66112	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	0.030000	0.626866	
mm_6151.1	chr1	64956618	64956818	-	1	NA	NA	NA	106	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.100000	0.711443	
mm_67149.1	chr7	73515678	73515878	-	1	NA	NA	NA	25968	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.020000	0.393035	
mm_20509.1	chr2	130629913	130630113	-	1	NA	NA	NA	14	NM_198176	380601	Mm.27090	NM_198176	ENSMUSG00000079043	Fastkd5	C78212|mKIAA1792	FAST kinase domains 5	protein-coding	0.070000	0.582090	
mm_66787.1	chr7	47015683	47015883	-	1	NA	NA	NA	-7369	NM_175318	101685	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.010000	0.582090	
mm_103417.1	chr11	75532973	75533173	-	1	NA	NA	NA	961	NM_001199283	215113	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.015000	0.467662	
mm_79372.1	chr9	54698793	54698993	+	1	NA	NA	NA	-666	NM_021422	58233	Mm.489676	NM_021422	ENSMUSG00000032285	Dnaja4	1110021L12Rik|AV358213|Dj4|Hsj4|mmDjA4	DnaJ heat shock protein family (Hsp40) member A4	protein-coding	0.020000	0.552239	
mm_172843.1	chr9	33118654	33118854	-	1	NA	NA	NA	-189788	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.000000	0.233831	
mm_81051.1	chr9	105658289	105658489	+	1	NA	NA	NA	15394	NM_001081309	75669	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 4, p150	protein-coding	0.040000	0.587065	
mm_87347.1	chr10	43579070	43579270	+	1	NA	NA	NA	1	NM_009846	12484	Mm.29742	NM_009846	ENSMUSG00000047139	Cd24a	Cd24|HSA|Ly-52|nectadrin	CD24a antigen	protein-coding	0.140000	0.701493	-35(CGGTATATAAGG,-,0.00)
mm_119980.1	chr14	55575540	55575740	+	1	NA	NA	NA	-34	NM_026808	68680	Mm.36758	NM_026808	ENSMUSG00000022215	Fitm1	1110028A07Rik|AV010547|Cg10671|Fit1	fat storage-inducing transmembrane protein 1	protein-coding	0.035000	0.666667	
mm_126312.1	chr15	79670772	79670972	+	1	NA	NA	NA	4	NM_172609	223696	Mm.246435	NM_172609	ENSMUSG00000022427	Tomm22	2310047D01|Tom22	translocase of outer mitochondrial membrane 22 homolog (yeast)	protein-coding	0.100000	0.671642	
mm_148719.1	chr19	5845026	5845226	+	1	NA	NA	NA	352	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.025000	0.587065	
mm_65050.1	chr7	18647001	18647201	-	1	NA	NA	NA	9624	NM_027403	72242	Mm.326858	NM_027403	ENSMUSG00000070796	Psg21	1600019C01Rik|1600025N01Rik|1600026N13Rik|cea8	pregnancy-specific glycoprotein 21	protein-coding	0.000000	0.512438	
mm_58804.1	chr7	16308653	16308853	+	1	NA	NA	NA	-830	NM_133234	170770	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.025000	0.547264	
mm_21300.1	chr2	157057837	157058037	-	1	NA	NA	NA	21328	NM_001164663	320706	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.010000	0.557214	28(CCTTCTATAAGG,-,0.00)
mm_60608.1	chr7	44584952	44585152	+	1	NA	NA	NA	-5834	NM_008422	16504	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.015000	0.582090	
mm_41152.1	chr5	87929702	87929902	+	1	NA	NA	NA	4169	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.020000	0.457711	
mm_55790.1	chr6	82705233	82705433	-	1	NA	NA	NA	-52468	NM_025882	66979	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	0.025000	0.542289	
mm_31594.1	chr4	57877385	57877585	+	1	NA	NA	NA	22923	NM_001035533	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.025000	0.328358	
mm_79694.1	chr9	60794423	60794623	+	1	NA	NA	NA	-25	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.090000	0.736318	
mm_92623.1	chr10	80260867	80261067	-	1	NA	NA	NA	45	NM_001347119	14431	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0.075000	0.686567	
mm_56791.1	chr6	116645136	116645336	-	1	NA	NA	NA	811	NR_106010	102466793		NR_106010	ENSMUSG00000098334	Mir7043	Gm27776|mmu-mir-7043	microRNA 7043	ncRNA	0.030000	0.592040	
mm_154199.1	chr19	58987892	58988092	-	1	NA	NA	NA	-44320	NM_001327998	73442	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0.005000	0.457711	-60(GGCTATTTGAGG,-,0.00)
mm_167679.1	chr9	78378482	78378682	-	1	NA	NA	NA	6	NM_026480	67968	Mm.26883	NM_026480	ENSMUSG00000032346	Ooep	2410146L05Rik|Floped|Moep19|Sddr	oocyte expressed protein	protein-coding	0.075000	0.686567	
mm_79407.1	chr9	55149341	55149541	+	1	NA	NA	NA	72	NM_001346657	109161	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0.170000	0.756219	-96(GCCCTTTTAAGC,-,0.00),-94(CCTTTTAAGCCG,+,0.00)
mm_123392.1	chr14	63416731	63416931	-	1	NA	NA	NA	356	NM_007549	12143	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.005000	0.527363	
mm_79281.1	chr9	50835216	50835416	+	1	NA	NA	NA	-21608	NM_001034085	73699	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0.015000	0.522388	
mm_13488.1	chr2	106693132	106693332	+	1	NA	NA	NA	-227	NM_001143683	77015	Mm.45628	NM_029837	ENSMUSG00000016386	Mpped2	239Fb|2700082O15Rik|AV354767|AW060960	metallophosphoesterase domain containing 2	protein-coding	0.050000	0.621891	
mm_13412.1	chr2	104096842	104097042	+	1	NA	NA	NA	1141	NM_001111060	12509	Mm.247265	NM_007652	ENSMUSG00000032679	Cd59a	AA987121|Cd59|protectin	CD59a antigen	protein-coding	0.005000	0.477612	
mm_11535.1	chr2	32629688	32629888	+	1	NA	NA	NA	288	NM_021515	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.015000	0.547264	
mm_128083.1	chr15	27681479	27681679	-	1	NA	NA	NA	-37	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.125000	0.706468	
mm_97383.1	chr11	77722525	77722725	+	1	NA	NA	NA	2668	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.025000	0.457711	
mm_54447.1	chr6	34741730	34741930	-	1	NA	NA	NA	32386	NM_145575	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.040000	0.557214	
mm_5566.1	chr1	38897886	38898086	-	1	NA	NA	NA	174	NM_145142	98388	Mm.260054	NM_145142	ENSMUSG00000026080	Chst10	AI507003|AU041319|Hnk-1st|ST	carbohydrate sulfotransferase 10	protein-coding	0.120000	0.756219	
mm_118646.1	chr14	21555902	21556102	+	1	NA	NA	NA	56217	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.020000	0.472637	
mm_115879.1	chr13	21753760	21753960	-	1	NA	NA	NA	52	NM_178183	319169	Mm.370338	NM_178183	ENSMUSG00000063021	Hist1h2ak	-	histone cluster 1, H2ak	protein-coding	0.025000	0.492537	-34(GACTATAAATAC,-,0.00)
mm_56823.1	chr6	117173466	117173666	-	1	NA	NA	NA	5031	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.025000	0.517413	
mm_43560.1	chr5	137629055	137629255	+	1	NA	NA	NA	32	NR_033148	100316903	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0.100000	0.691542	
mm_37312.1	chr4	119294649	119294849	-	1	NA	NA	NA	-236	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.110000	0.641791	
mm_153512.1	chr19	41371815	41372015	-	1	NA	NA	NA	13155	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.000000	0.393035	
mm_118689.1	chr14	22123134	22123334	+	1	NA	NA	NA	103522	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.457711	
mm_105760.1	chr11	109549732	109549932	-	1	NA	NA	NA	6121	NM_001166177	74008	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872	arylsulfatase G	protein-coding	0.015000	0.567164	-33(ATCTATAAAAGC,-,0.00)
mm_94234.1	chr11	3291652	3291852	+	1	NA	NA	NA	1295	NM_019574	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.060000	0.542289	
mm_69989.1	chr7	142382568	142382768	-	1	NA	NA	NA	5202	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.025000	0.592040	
mm_170649.1	chr2	10064129	10064329	-	1	NA	NA	NA	-15620	NM_027748	209361	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0.000000	0.442786	
mm_28267.1	chr3	88748784	88748984	-	1	NA	NA	NA	23715	NM_018804	229521	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0.020000	0.547264	
mm_23569.1	chr3	63295904	63296104	+	1	NA	NA	NA	-91	NM_001289463	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.115000	0.766169	
mm_118131.1	chr13	104623244	104623444	-	1	NA	NA	NA	193609	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.010000	0.542289	
mm_58038.1	chr6	136807963	136808163	-	1	NA	NA	NA	-185	NM_177688	232440	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	0.020000	0.477612	
mm_66267.1	chr7	35855170	35855370	-	1	NA	NA	NA	-52281	NM_177739	668501	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	0.015000	0.527363	
mm_47224.1	chr5	121330213	121330413	-	1	NA	NA	NA	55302	NM_001163470	231712	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.065000	0.611940	-32(CTCCTTAAAGGG,-,0.00),-30(CCTTAAAGGGGA,+,0.00)
mm_11232.1	chr2	29802713	29802913	+	1	NA	NA	NA	133	NM_011989	26569	Mm.330113	NM_011989	ENSMUSG00000059316	Slc27a4	BB144259|FATP4	solute carrier family 27 (fatty acid transporter), member 4	protein-coding	0.105000	0.741294	
mm_127961.1	chr15	11906093	11906293	-	1	NA	NA	NA	-332	NR_131059	381002	Mm.441967	NR_131059		Gm5144	-	predicted gene 5144	ncRNA	0.080000	0.656716	52(CGCTATTTAAAC,-,0.00),54(CTATTTAAACCC,+,0.00)
mm_5572.1	chr1	39455636	39455836	-	1	NA	NA	NA	23011	NM_018775	54610	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.055000	0.497512	
mm_102259.1	chr11	55312067	55312267	-	1	NA	NA	NA	90	NM_001029988	245827	Mm.339363	NM_001029988	ENSMUSG00000055333	Fat2	EMI2|Fath2|Gm523|mKIAA0811	FAT atypical cadherin 2	protein-coding	0.015000	0.532338	
mm_61462.1	chr7	75609573	75609773	+	1	NA	NA	NA	154139	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.015000	0.547264	
mm_42595.1	chr5	117413676	117413876	+	1	NA	NA	NA	-226	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.090000	0.781095	
mm_123138.1	chr14	56620416	56620616	-	1	NA	NA	NA	44897	NM_001145978	328417	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	0.030000	0.527363	
mm_144189.1	chr18	7869120	7869320	+	1	NA	NA	NA	23	NM_153085	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.130000	0.731343	
mm_65537.1	chr7	25816522	25816722	-	1	NA	NA	NA	-92	NM_028775	74134	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0.070000	0.616915	
mm_21253.1	chr2	156312217	156312417	-	1	NA	NA	NA	-156	NM_027585	70873	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	0.135000	0.751244	
mm_6413.1	chr1	72874784	72874984	-	1	NA	NA	NA	-19	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.025000	0.522388	-33(CTATTTAAAAGC,-,0.00)
mm_84499.1	chr9	66916506	66916706	-	1	NA	NA	NA	3099	NM_173413	235442	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.015000	0.457711	
mm_41859.1	chr5	104440474	104440674	+	1	NA	NA	NA	4382	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.005000	0.398010	
mm_169640.1	chr15	5023806	5024006	+	1	NA	NA	NA	39867	NM_001243837	109828	Mm.208034	NM_001243837	ENSMUSG00000079105	C7	A530026G17|Gm1238	complement component 7	protein-coding	0.010000	0.492537	-36(CCCTTTATAAGC,+,0.00),-36(CCCTTTATAAGC,-,0.00),-34(CTTTATAAGCGC,+,0.00)
mm_29320.1	chr3	108017365	108017565	-	1	NA	NA	NA	508	NM_010358	14862	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	0.040000	0.522388	
mm_11215.1	chr2	29643605	29643805	+	1	NA	NA	NA	23985	NM_001039086	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.000000	0.512438	
mm_81923.1	chr9	120168290	120168490	+	1	NA	NA	NA	18648	NM_001039364	17433	Mm.486167	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.040000	0.676617	
mm_26971.1	chr3	24783515	24783715	-	1	NA	NA	NA	391	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.020000	0.477612	
mm_114239.1	chr13	56613735	56613935	+	1	NA	NA	NA	4232	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.010000	0.601990	
mm_155283.1	chrX	61183151	61183351	+	1	NA	NA	NA	2307	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.005000	0.427861	
mm_72442.1	chr8	83165280	83165480	+	1	NA	NA	NA	28	NM_027758	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.050000	0.567164	
mm_156345.1	chrX	139086138	139086338	+	1	NA	NA	NA	-5	NM_029174	75125	Mm.179221	NM_029174	ENSMUSG00000031270	4930513O06Rik	-	RIKEN cDNA 4930513O06 gene	protein-coding	0.005000	0.398010	-89(GGGTTTTAAAGC,-,0.00)
mm_98710.1	chr11	96307023	96307223	+	1	NA	NA	NA	-213	NR_131758	75395	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	0.030000	0.502488	
mm_127513.1	chr15	101850029	101850229	+	1	NA	NA	NA	657	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.015000	0.497512	
mm_126709.1	chr15	85238415	85238615	+	1	NA	NA	NA	32507	NM_010180	14114	Mm.297992	NM_010180	ENSMUSG00000006369	Fbln1	-	fibulin 1	protein-coding	0.025000	0.547264	
mm_115676.1	chr13	12912897	12913097	-	1	NA	NA	NA	92333	NM_031191	18811	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0.000000	0.398010	
mm_109778.1	chr12	119238211	119238411	+	1	NA	NA	NA	-35	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.040000	0.606965	
mm_5742.1	chr1	45502964	45503164	-	1	NA	NA	NA	218	NM_007737	12832	Mm.10299	NM_007737	ENSMUSG00000026042	Col5a2	1110014L14Rik	collagen, type V, alpha 2	protein-coding	0.030000	0.522388	-35(TCCTATTTAAAG,-,0.00)
mm_25.1	chr1	5139286	5139486	+	1	NA	NA	NA	56300	NM_001310442	108664	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	0.005000	0.308458	
mm_109055.1	chr12	104340416	104340616	+	1	NA	NA	NA	2030	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.000000	0.457711	
mm_48299.1	chr5	138263937	138264137	-	1	NA	NA	NA	-8	NR_045821	69004	Mm.439868	NR_045821	ENSMUSG00000085227	6330418K02Rik	-	RIKEN cDNA 6330418K02 gene	ncRNA	0.065000	0.636816	
mm_39452.1	chr5	17574495	17574695	+	1	NA	NA	NA	-221	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.130000	0.786070	
mm_15830.1	chr2	164653798	164653998	+	1	NA	NA	NA	1068	NM_001160414	629754	Mm.190489	NM_001160414	ENSMUSG00000074594	Wfdc9	OTTMUSG00000001088	WAP four-disulfide core domain 9	protein-coding	0.015000	0.502488	
mm_144035.1	chr17	90088232	90088432	-	1	NA	NA	NA	36	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.015000	0.467662	
mm_54514.1	chr6	35511923	35512123	-	1	NA	NA	NA	27865	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.407960	
mm_82962.1	chr9	35611891	35612091	-	1	NA	NA	NA	-106	NM_020264	56872	Mm.390143	NM_020264	ENSMUSG00000032099	Pate4	9530004K16Rik|Pate-B|Svs7	prostate and testis expressed 4	protein-coding	0.000000	0.412935	88(CTTTATATAGAG,+,0.00)
mm_150007.1	chr19	29289526	29289726	+	1	NA	NA	NA	35692	NM_013754	27356	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding	0.010000	0.427861	10(GACTATATGAGG,-,0.00)
mm_168352.1	chr1	113904051	113904251	-	1	NA	NA	NA	-1780986	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.040000	0.482587	
mm_100791.1	chr11	4939587	4939787	-	1	NA	NA	NA	-7834	NM_001243043	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.010000	0.507463	
mm_36607.1	chr4	88982508	88982708	-	1	NA	NA	NA	-40566	NR_132735	106557447	Mm.484668	NR_132734		LOC106557447	-	uncharacterized LOC106557447	ncRNA	0.010000	0.452736	-55(GGGCCTATAGGG,-,0.00),-22(AACCATAAAAGA,-,0.00)
mm_18988.1	chr2	76863231	76863431	-	1	NA	NA	NA	119216	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.015000	0.467662	
mm_160737.1	chr10	79613765	79613965	-	1	NA	NA	NA	153	NM_198614	237397	Mm.334207	NM_198614	ENSMUSG00000045912	C2cd4c	4932409I22Rik|Fam148c|Gm238	C2 calcium-dependent domain containing 4C	protein-coding	0.130000	0.741294	
mm_158391.1	chrX	136203771	136203971	-	1	NA	NA	NA	-20	NM_177919	331532	Mm.41605	NM_177919	ENSMUSG00000054034	Tceal5	6430401A05Rik	transcription elongation factor A (SII)-like 5	protein-coding	0.035000	0.567164	
mm_21100.1	chr2	153237826	153238026	-	1	NA	NA	NA	3432	NM_018807	54711	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	0.015000	0.447761	
mm_137508.1	chr17	27037719	27037919	+	1	NA	NA	NA	8560	NM_027544	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.005000	0.577114	
mm_67258.1	chr7	75772810	75773010	-	1	NA	NA	NA	-75428	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.005000	0.517413	
mm_27935.1	chr3	79572327	79572527	-	1	NA	NA	NA	-4748	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.005000	0.477612	
mm_20618.1	chr2	131855438	131855638	-	1	NA	NA	NA	4209	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	0.015000	0.462687	
mm_170005.1	chr1	71653099	71653299	-	1	NA	NA	NA	35	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.090000	0.706468	-6(TCCCATATAAGC,-,0.00)
mm_97724.1	chr11	80383307	80383507	+	1	NA	NA	NA	128	NM_001130171	22680	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0.050000	0.522388	
mm_81598.1	chr9	110532451	110532651	+	1	NA	NA	NA	-46	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.130000	0.796020	
mm_56005.1	chr6	86488100	86488300	-	1	NA	NA	NA	27	NR_040293	381792	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.015000	0.517413	
mm_128624.1	chr15	59019174	59019374	-	1	NA	NA	NA	62752	NM_001146180	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.025000	0.512438	
mm_163714.1	chr13	110415068	110415268	+	1	NA	NA	NA	20124	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.000000	0.278607	
mm_57142.1	chr6	122609964	122610164	-	1	NA	NA	NA	23	NM_008108	14562	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0.025000	0.542289	
mm_63706.1	chr7	130646208	130646408	+	1	NA	NA	NA	-46248	NM_001347637	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.090000	0.656716	
mm_140728.1	chr17	15499802	15500002	-	1	NA	NA	NA	14	NM_013684	21374	Mm.244820	NM_013684	ENSMUSG00000014767	Tbp	GTF2D1|Gtf2d|SCA17|TFIID	TATA box binding protein	protein-coding	0.100000	0.621891	
mm_100590.1	chr11	120956441	120956641	+	1	NA	NA	NA	7474	NM_001038654	80879	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0.045000	0.666667	
mm_23787.1	chr3	79418374	79418574	+	1	NA	NA	NA	73098	NM_001142953	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.040000	0.517413	
mm_77782.1	chr9	3022785	3022985	+	1	NA	NA	NA	15858	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.015000	0.348259	
mm_173215.1	chrX	73483561	73483761	+	1	NA	NA	NA	60	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.055000	0.666667	
mm_74567.1	chr8	11008857	11009057	-	1	NA	NA	NA	-527	NM_001081212	384783	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.130000	0.661692	
mm_171641.1	chr4	29095975	29096175	-	1	NA	NA	NA	282930	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.000000	0.517413	
mm_77834.1	chr9	4313003	4313203	+	1	NA	NA	NA	3287	NM_026962	69149	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	0.005000	0.298507	
mm_139449.1	chr17	55510164	55510364	+	1	NA	NA	NA	64547	NM_172829	240119	Mm.311687	NM_172829	ENSMUSG00000024172	St6gal2	C230064G14Rik|St6galII|mKIAA1877	beta galactoside alpha 2,6 sialyltransferase 2	protein-coding	0.025000	0.542289	
mm_17553.1	chr2	30093561	30093761	-	1	NA	NA	NA	-26	NM_001037762	66220	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	0.085000	0.711443	
mm_165882.1	chr4	42705873	42706073	+	1	NA	NA	NA	-40210	NM_001100596	100038993	Mm.458019	NM_001100596	ENSMUSG00000095623	Gm2002	-	predicted gene 2002	protein-coding	0.005000	0.442786	
mm_19743.1	chr2	104785645	104785845	-	1	NA	NA	NA	30951	NM_001123327	99003	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	0.010000	0.348259	
mm_122153.1	chr14	31323807	31324007	-	1	NA	NA	NA	-11	NM_001033668	110084	Mm.101811	NM_001033668	ENSMUSG00000019027	Dnah1	B230373P09Rik|Dnahc1|E030034C22Rik|MDHC7	dynein, axonemal, heavy chain 1	protein-coding	0.065000	0.597015	
mm_50378.1	chr6	48684494	48684694	+	1	NA	NA	NA	16	NM_174990	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.010000	0.472637	
mm_139225.1	chr17	47730542	47730742	+	1	NA	NA	NA	3800	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.030000	0.582090	
mm_7787.1	chr1	131427071	131427271	-	1	NA	NA	NA	100190	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.010000	0.412935	-43(GCTTTTCTGGGC,+,0.00)
mm_63427.1	chr7	127478132	127478332	+	1	NA	NA	NA	6618	NM_145589	233895	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.055000	0.592040	
mm_29850.1	chr3	129970043	129970243	-	1	NA	NA	NA	63	NM_025779	66815	Mm.31056	NM_025779	ENSMUSG00000027994	Ccdc109b	9030408N13Rik|MCUb	coiled-coil domain containing 109B	protein-coding	0.070000	0.606965	
mm_110338.1	chr12	36020479	36020679	-	1	NA	NA	NA	21899	NM_025359	66109	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0.035000	0.472637	
mm_28287.1	chr3	89089608	89089808	-	1	NA	NA	NA	323	NM_001083808	72296	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.050000	0.567164	
mm_86044.1	chr9	114496501	114496701	-	1	NA	NA	NA	-57	NM_009916	12773	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	0.005000	0.442786	
mm_43404.1	chr5	135862926	135863126	+	1	NA	NA	NA	-24893	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.000000	0.517413	
mm_164349.1	chr16	19883728	19883928	-	1	NA	NA	NA	446	NR_027896	68162	Mm.35159	NR_015488		A930003A15Rik	AI853191	RIKEN cDNA A930003A15 gene	ncRNA	0.020000	0.527363	
mm_24510.1	chr3	92584311	92584511	+	1	NA	NA	NA	4613	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.010000	0.611940	
mm_133866.1	chr16	96361675	96361875	+	1	NA	NA	NA	11	NM_028078	72058	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.020000	0.552239	
mm_15536.1	chr2	158383046	158383246	+	1	NA	NA	NA	7508	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.020000	0.402985	
mm_19442.1	chr2	91965630	91965830	-	1	NA	NA	NA	-2167	NM_138306	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.040000	0.656716	
mm_162145.1	chrX	74481416	74481616	-	1	NA	NA	NA	-117	NM_001099305	628456	Mm.455664	NM_001099305	ENSMUSG00000079536	Gm6880	EG628456	predicted gene 6880	protein-coding	0.045000	0.522388	
mm_169194.1	chr13	66108745	66108945	+	1	NA	NA	NA	-4608	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.020000	0.532338	
mm_115193.1	chr13	108775226	108775426	+	1	NA	NA	NA	121149	NM_011056	238871	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	0.005000	0.562189	
mm_18877.1	chr2	76360283	76360483	-	1	NA	NA	NA	70	NM_009989	13067	Mm.4872	NM_009989	ENSMUSG00000056436	Cyct	T-Cc	cytochrome c, testis	protein-coding	0.025000	0.606965	-31(GCCTTTAAGAGG,-,0.00),-30(CCTTTAAGAGGA,+,0.00)
mm_81590.1	chr9	110476940	110477140	+	1	NA	NA	NA	46	NM_001163569	16578	Mm.42170	NM_010628	ENSMUSG00000032489	Kif9	-	kinesin family member 9	protein-coding	0.065000	0.592040	
mm_27912.1	chr3	79531583	79531783	-	1	NA	NA	NA	35996	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.005000	0.502488	
mm_57229.1	chr6	123282559	123282759	-	1	NA	NA	NA	7212	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.005000	0.298507	
mm_111253.1	chr12	84951044	84951244	-	1	NA	NA	NA	19742	NM_178065	68497	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	0.005000	0.388060	
mm_19290.1	chr2	90453225	90453425	-	1	NA	NA	NA	25849	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.020000	0.492537	
mm_56516.1	chr6	99435277	99435477	-	1	NA	NA	NA	-32	NM_053202	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.030000	0.477612	
mm_148914.1	chr19	6975015	6975215	+	1	NA	NA	NA	67	NM_008889	18938	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.155000	0.825871	
mm_132610.1	chr16	38585286	38585486	+	1	NA	NA	NA	22572	NM_026407	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.010000	0.467662	-54(GTCTCTAAAAGA,-,0.00)
mm_131845.1	chr16	23058239	23058439	+	1	NA	NA	NA	39	NM_001102412	16644	Mm.2160	NM_023125	ENSMUSG00000022875	Kng1	Kng	kininogen 1	protein-coding	0.005000	0.527363	
mm_73707.1	chr8	111687059	111687259	+	1	NA	NA	NA	2515	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.035000	0.616915	
mm_109656.1	chr12	112976649	112976849	+	1	NA	NA	NA	186	NM_201646	399566	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	0.130000	0.716418	
mm_24641.1	chr3	94377368	94377568	+	1	NA	NA	NA	36	NR_121656	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.005000	0.616915	
mm_163763.1	chr13	120012151	120012351	+	1	NA	NA	NA	39953	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.010000	0.353234	
mm_58132.1	chr6	140625314	140625514	-	1	NA	NA	NA	505	NM_001309437	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.015000	0.407960	
mm_2791.1	chr1	130850638	130850838	+	1	NA	NA	NA	-15039	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.020000	0.502488	
mm_28650.1	chr3	95228578	95228778	-	1	NA	NA	NA	-1	NM_019914	56772	Mm.331208	NM_019914	ENSMUSG00000053192	Mllt11	AI839562|Af1q|Zfp692	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11	protein-coding	0.130000	0.736318	
mm_32652.1	chr4	115088652	115088852	+	1	NA	NA	NA	44	NM_001164557	67182	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	0.010000	0.557214	
mm_7927.1	chr1	133899133	133899333	-	1	NA	NA	NA	7940	NM_054076	269120	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	0.025000	0.522388	
mm_125116.1	chr15	28325752	28325952	+	1	NA	NA	NA	122086	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.005000	0.472637	
mm_29170.1	chr3	106511365	106511565	-	1	NA	NA	NA	25425	NM_028110	72121	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.000000	0.303483	62(TCCTTTAAAAAA,-,0.00),82(CCTTTTAGGAAG,+,0.00)
mm_124442.1	chr14	118735052	118735252	-	1	NA	NA	NA	-28933	NM_001033336	239273	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.005000	0.432836	
mm_48621.1	chr5	144965735	144965935	-	1	NA	NA	NA	-5	NM_029438	75788	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	0.205000	0.835821	
mm_135844.1	chr16	58638301	58638501	-	1	NA	NA	NA	2	NM_175011	224247	Mm.26145	NM_175011	ENSMUSG00000055789	E330017A01Rik	-	RIKEN cDNA E330017A01 gene	protein-coding	0.030000	0.452736	
mm_73387.1	chr8	105693753	105693953	+	1	NA	NA	NA	2947	NM_001033320	234695	Mm.471640	NM_001033320	ENSMUSG00000050357	Carmil2	CG1399-PB|D130029J02Rik|Gm585|Rltpr	capping protein regulator and myosin 1 linker 2	protein-coding	0.105000	0.711443	
mm_83298.1	chr9	43239788	43239988	-	1	NA	NA	NA	-72	NM_178644	102644	Mm.246479	NM_178644	ENSMUSG00000032014	Oaf	AL024221|D130038B21Rik|D9Ucla1	out at first homolog	protein-coding	0.055000	0.606965	-35(GTCCCTTTAAGG,-,0.00),-34(TCCCTTTAAGGG,-,0.00),-33(CCCTTTAAGGGC,+,0.00),-32(CCTTTAAGGGCC,+,0.00),-8(GTCTCTTTAAGG,-,0.00)
mm_99252.1	chr11	101120032	101120232	+	1	NA	NA	NA	1	NM_134024	103733	Mm.479145	NM_134024	ENSMUSG00000035198	Tubg1	1500010O08Rik|AI451582|AI503389|Tubg	tubulin, gamma 1	protein-coding	0.090000	0.606965	
mm_4615.1	chr1	178636800	178637000	+	1	NA	NA	NA	107775	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.010000	0.383085	-16(GCCTTTAAAACG,-,0.00),-15(CCTTTAAAACGT,+,0.00)
mm_132897.1	chr16	48844180	48844380	+	1	NA	NA	NA	1728	NM_020509	57262	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0.010000	0.482587	
mm_46864.1	chr5	113820065	113820265	-	1	NA	NA	NA	10336	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.025000	0.587065	
mm_26500.1	chr3	145757163	145757363	+	1	NA	NA	NA	-1429	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.025000	0.442786	
mm_53681.1	chr6	142313986	142314186	+	1	NA	NA	NA	8895	NM_130861	108096	Mm.206599	NM_130861	ENSMUSG00000063975	Slco1a5	Oatp-3|Oatp3|Slc21a7	solute carrier organic anion transporter family, member 1a5	protein-coding	0.005000	0.427861	
mm_117939.1	chr13	99434513	99434713	-	1	NA	NA	NA	-21787	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.532338	
mm_165429.1	chr2	153345404	153345604	+	1	NA	NA	NA	306	NR_040318	72326	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0.080000	0.616915	
mm_5695.1	chr1	43186369	43186569	-	1	NA	NA	NA	10292	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.025000	0.527363	
mm_48171.1	chr5	137153098	137153298	-	1	NA	NA	NA	-36991	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.015000	0.482587	
mm_81337.1	chr9	108517618	108517818	+	1	NA	NA	NA	631	NM_175143	69232	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik	glutamine-rich 1	protein-coding	0.145000	0.751244	
mm_20261.1	chr2	126618563	126618763	-	1	NA	NA	NA	15	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.010000	0.547264	
mm_111688.1	chr12	103457133	103457333	-	1	NA	NA	NA	-10	NM_145449	217845	Mm.298416	NM_145449	ENSMUSG00000021208	Ifi27l2b	1810023F06Rik|ISG12(b2)	interferon, alpha-inducible protein 27 like 2B	protein-coding	0.005000	0.467662	-63(TCATTTAAAGGA,+,0.00)
mm_63587.1	chr7	128132881	128133081	+	1	NA	NA	NA	3413	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.020000	0.492537	
mm_158674.1	chrX	157598575	157598775	-	1	NA	NA	NA	40	NM_172307	270669	Mm.37577	NM_172307	ENSMUSG00000046873	Mbtps2	9630032G22Rik|AI662535	membrane-bound transcription factor peptidase, site 2	protein-coding	0.090000	0.592040	
mm_85333.1	chr9	102603472	102603672	-	1	NA	NA	NA	22552	NM_001301689	28135	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	0.005000	0.328358	
mm_36794.1	chr4	103114262	103114462	-	1	NA	NA	NA	-28	NM_027696	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.100000	0.736318	
mm_27428.1	chr3	51553978	51554178	-	1	NA	NA	NA	-5679	NR_033624	100039684	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	0.025000	0.482587	
mm_92232.1	chr10	69124990	69125190	-	1	NA	NA	NA	-83462	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.010000	0.427861	
mm_154937.1	chrX	36111722	36111922	+	1	NA	NA	NA	-286	NM_133990	16164	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	0.010000	0.552239	
mm_122941.1	chr14	54965281	54965481	-	1	NA	NA	NA	1226	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.055000	0.577114	
mm_72041.1	chr8	70905894	70906094	+	1	NA	NA	NA	20	NM_173013	270058	Mm.248559	NM_173013	ENSMUSG00000019261	Map1s	6430517J16Rik|Bpy2ip1|Map8|Mtap1s|VCY2IP1	microtubule-associated protein 1S	protein-coding	0.100000	0.741294	
mm_94053.1	chr10	128180186	128180386	-	1	NA	NA	NA	11	NM_001039080	56516	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.025000	0.507463	
mm_109260.1	chr12	109460456	109460656	+	1	NA	NA	NA	7101	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.020000	0.358209	16(CCCTATTAATGC,-,0.00)
mm_106352.1	chr11	118393466	118393666	-	1	NA	NA	NA	8365	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.015000	0.557214	
mm_45704.1	chr5	83354982	83355182	-	1	NA	NA	NA	113	NM_153801	243078	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding	0.015000	0.447761	
mm_172544.1	chr7	98119367	98119567	-	1	NA	NA	NA	26	NM_001256081	17921	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.015000	0.592040	
mm_3271.1	chr1	136466294	136466494	+	1	NA	NA	NA	-1454	NM_001287179	381293	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	0.105000	0.656716	
mm_152511.1	chr19	11277849	11278049	-	1	NA	NA	NA	5864	NM_183190	269063	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	0.005000	0.427861	
mm_85810.1	chr9	110387551	110387751	-	1	NA	NA	NA	20559	NM_001081043	104831	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.005000	0.597015	
mm_113318.1	chr13	30764735	30764935	+	1	NA	NA	NA	15602	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.010000	0.368159	
mm_127846.1	chr15	7398009	7398209	-	1	NA	NA	NA	281	NM_001289496	268780	Mm.203208	NM_178748	ENSMUSG00000042961	Egflam	5930412K08|AU040377	EGF-like, fibronectin type III and laminin G domains	protein-coding	0.070000	0.626866	
mm_99099.1	chr11	99948325	99948525	+	1	NA	NA	NA	-50	NM_001085527	435286	Mm.457964	NM_001085527	ENSMUSG00000078255	Krtap9-5	-	keratin associated protein 9-5	protein-coding	0.000000	0.452736	
mm_62327.1	chr7	100472892	100473092	+	1	NA	NA	NA	1	NM_009464	22229	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.020000	0.572139	
mm_83957.1	chr9	56950694	56950894	-	1	NA	NA	NA	-130	NM_178374	66069	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	0.085000	0.582090	
mm_172539.1	chr7	96203542	96203742	-	1	NA	NA	NA	-6995	NM_011858	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.050000	0.472637	
mm_129437.1	chr15	78511511	78511711	-	1	NA	NA	NA	-16545	NM_008368	16185	Mm.35287	NM_008368	ENSMUSG00000068227	Il2rb	CD122|IL-15Rbeta|IL15Rbeta|Il-2/15Rbeta|Il-2Rbeta|p70	interleukin 2 receptor, beta chain	protein-coding	0.015000	0.542289	
mm_83651.1	chr9	49506816	49507016	-	1	NA	NA	NA	-11372	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.030000	0.562189	
mm_138953.1	chr17	44172445	44172645	+	1	NA	NA	NA	-16027	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	0.000000	0.348259	
mm_130482.1	chr15	98741281	98741481	-	1	NA	NA	NA	-13183	NM_024169	66120	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.010000	0.507463	
mm_70396.1	chr8	11098874	11099074	+	1	NA	NA	NA	-90544	NM_001081212	384783	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.005000	0.417910	-28(CCACATAAAAAG,-,0.00)
mm_42903.1	chr5	122500631	122500831	+	1	NA	NA	NA	1494	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.015000	0.328358	-39(ACTTTTATGGGG,+,0.00)
mm_79169.1	chr9	47852312	47852512	+	1	NA	NA	NA	-34204	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.015000	0.398010	
mm_111144.1	chr12	81790821	81791021	-	1	NA	NA	NA	-9751	NM_001174107	338372	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.020000	0.517413	
mm_12903.1	chr2	84809411	84809611	+	1	NA	NA	NA	10683	NM_019949	56791	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.000000	0.492537	
mm_10546.1	chr2	16568435	16568635	+	1	NA	NA	NA	212231	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.010000	0.363184	
mm_37563.1	chr4	126202268	126202468	-	1	NA	NA	NA	342	NM_146153	230753	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0.095000	0.691542	
mm_17981.1	chr2	37703765	37703965	-	1	NA	NA	NA	-56580	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding	0.075000	0.651741	
mm_56258.1	chr6	90809949	90810149	-	1	NA	NA	NA	74	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.050000	0.631841	
mm_167387.1	chr8	94802372	94802572	-	1	NA	NA	NA	-7981	NM_011332	20295	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	0.010000	0.512438	
mm_77952.1	chr9	7560516	7560716	+	1	NA	NA	NA	2187	NM_008611	17394	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	0.010000	0.502488	
mm_118281.1	chr13	112745979	112746179	-	1	NA	NA	NA	-54698	NM_008903	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.000000	0.437811	-33(TAATATAAAAGG,-,0.00)
mm_135981.1	chr16	75092329	75092529	-	1	NA	NA	NA	493632	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.025000	0.402985	
mm_74136.1	chr8	123212819	123213019	+	1	NA	NA	NA	61	NM_177279	320869	Mm.258354	NM_177279	ENSMUSG00000048478	Spata33	4732415M23Rik|AI847264	spermatogenesis associated 33	protein-coding	0.105000	0.686567	
mm_166036.1	chr4	129033691	129033891	-	1	NA	NA	NA	-24480	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.030000	0.577114	
mm_15182.1	chr2	154191171	154191371	+	1	NA	NA	NA	453	NM_001012392	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.015000	0.527363	52(GCTTAAAAAGCC,+,0.00)
mm_113856.1	chr13	47239891	47240091	+	1	NA	NA	NA	45988	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.005000	0.497512	
mm_41054.1	chr5	86804189	86804389	+	1	NA	NA	NA	23	NM_001347376	231386	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.090000	0.636816	
mm_148855.1	chr19	6396455	6396655	+	1	NA	NA	NA	-4028	NM_011242	19395	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.010000	0.462687	
mm_1193.1	chr1	62703585	62703785	+	1	NA	NA	NA	368	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.070000	0.651741	
mm_10628.1	chr2	19659962	19660162	+	1	NA	NA	NA	2000	NM_027715	71198	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	0.010000	0.358209	
mm_137731.1	chr17	29293950	29294150	+	1	NA	NA	NA	-24832	NM_023734	74116	Mm.30950	NM_023734	ENSMUSG00000024011	Pi16	1200009H11Rik|Cripi|PI-16	peptidase inhibitor 16	protein-coding	0.020000	0.522388	
mm_122005.1	chr14	26939822	26940022	-	1	NA	NA	NA	30629	NM_145221	72993	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	0.010000	0.437811	
mm_10979.1	chr2	25823389	25823589	+	1	NA	NA	NA	336	NM_029959	77704	Mm.159974	NM_029959	ENSMUSG00000023210	Lcn9	9230102I19Rik	lipocalin 9	protein-coding	0.010000	0.542289	-57(GGGCAGAAAAGG,-,0.00)
mm_58226.1	chr6	144270801	144271001	-	1	NA	NA	NA	-61333	NM_001243163	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.000000	0.358209	
mm_32551.1	chr4	109406655	109406855	+	1	NA	NA	NA	-345	NM_153392	230603	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.065000	0.606965	
mm_18363.1	chr2	59154615	59154815	-	1	NA	NA	NA	-6135	NM_026361	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.015000	0.358209	
mm_116546.1	chr13	45964883	45965083	-	1	NA	NA	NA	8	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.050000	0.631841	
mm_106425.1	chr11	119299952	119300152	-	1	NA	NA	NA	-9	NM_138669	192170	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	0.165000	0.691542	
mm_173363.1	chrY	90819655	90819855	+	1	NA	NA	NA	19651	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.492537	
mm_107966.1	chr12	72760425	72760625	+	1	NA	NA	NA	-686	NM_008910	19042	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.050000	0.507463	
mm_1902.1	chr1	85801795	85801995	+	1	NA	NA	NA	8448	NM_133781	12283	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0.015000	0.432836	
mm_8275.1	chr1	139781168	139781368	-	1	NA	NA	NA	-29	NM_001160303	214403	Mm.337613	NM_001029977	ENSMUSG00000070594	Gm4788	Cfhrc|EG214403	predicted gene 4788	protein-coding	0.000000	0.358209	
mm_112412.1	chr13	3633971	3634171	+	1	NA	NA	NA	39	NM_001267724	142688	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	0.085000	0.676617	
mm_103902.1	chr11	83576851	83577051	-	1	NA	NA	NA	1685	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.015000	0.393035	
mm_160260.1	chr7	109493605	109493805	-	1	NA	NA	NA	33	NM_001170913	330627	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	0.020000	0.502488	
mm_24603.1	chr3	93445374	93445574	+	1	NA	NA	NA	3144	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.050000	0.557214	
mm_41546.1	chr5	92897964	92898164	+	1	NA	NA	NA	71	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.195000	0.815920	
mm_29013.1	chr3	101605079	101605279	-	1	NA	NA	NA	-472	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.060000	0.492537	-72(TTTTATATAGTC,+,0.00)
mm_121872.1	chr14	21011247	21011447	-	1	NA	NA	NA	41095	NM_018829	55946	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.000000	0.378109	
mm_163360.1	chr12	31536461	31536661	-	1	NA	NA	NA	23408	NM_011867	23985	Mm.100187	NM_011867	ENSMUSG00000020651	Slc26a4	Pds|pendrin	solute carrier family 26, member 4	protein-coding	0.005000	0.502488	
mm_28872.1	chr3	97702785	97702985	-	1	NA	NA	NA	-12323	NR_106084	102466229		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	0.015000	0.487562	
mm_151745.1	chr19	5023853	5024053	-	1	NA	NA	NA	-53	NM_007854	13340	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	0.080000	0.631841	
mm_19969.1	chr2	118011692	118011892	-	1	NA	NA	NA	99410	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA	0.015000	0.522388	
mm_2870.1	chr1	131750413	131750613	+	1	NA	NA	NA	6491	NM_177243	320718	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	0.020000	0.567164	
mm_48738.1	chr5	147637364	147637564	-	1	NA	NA	NA	88524	NM_010228	14254	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.010000	0.442786	
mm_127213.1	chr15	99249386	99249586	+	1	NA	NA	NA	-2302	NR_045627	73600	Mm.475134	NR_045627	ENSMUSG00000100599	1700120C14Rik	-	RIKEN cDNA 1700120C14 gene	ncRNA	0.040000	0.601990	
mm_109994.1	chr12	15815478	15815678	-	1	NA	NA	NA	1207	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.055000	0.557214	-31(CCTTTTAAGTCG,+,0.00)
mm_77127.1	chr8	111337694	111337894	-	1	NA	NA	NA	411	NM_001310613	74568	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0.025000	0.502488	
mm_36063.1	chr4	57916068	57916268	-	1	NA	NA	NA	96	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.040000	0.567164	
mm_122566.1	chr14	50781117	50781317	-	1	NA	NA	NA	4303	NM_177625	219022	Mm.276362	NM_177625	ENSMUSG00000006288	Ttc5	-	tetratricopeptide repeat domain 5	protein-coding	0.010000	0.383085	
mm_106862.1	chr12	8009229	8009429	+	1	NA	NA	NA	31652	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.383085	18(GTCTTTATAGTC,+,0.00)
mm_896.1	chr1	53313529	53313729	+	1	NA	NA	NA	5	NR_104360	72085	Mm.482256	NM_028091	ENSMUSG00000026096	Osgepl1	2610001M19Rik|AA416452	O-sialoglycoprotein endopeptidase-like 1	protein-coding	0.070000	0.567164	-71(GGCTATAAGAAG,-,0.00)
mm_6301.1	chr1	71414709	71414909	-	1	NA	NA	NA	101	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding	0.010000	0.447761	
mm_95956.1	chr11	58782863	58783063	+	1	NA	NA	NA	-3176	NM_001011760	257917	Mm.377302	NM_001011760	ENSMUSG00000059504	Olfr314	MOR278-2	olfactory receptor 314	protein-coding	0.010000	0.547264	
mm_140932.1	chr17	24350990	24351190	-	1	NA	NA	NA	-933	NM_013855	27410	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	0.105000	0.701493	
mm_76994.1	chr8	107080566	107080766	-	1	NA	NA	NA	-15022	NM_025458	66269	Mm.23032	NM_025458	ENSMUSG00000031919	Tmed6	1810015P03Rik|1810018I24Rik	transmembrane p24 trafficking protein 6	protein-coding	0.015000	0.532338	34(GCTCATAGAGGC,+,0.00)
mm_58681.1	chr7	12512417	12512617	+	1	NA	NA	NA	-34	NM_028434	73090	Mm.84622	NM_028434	ENSMUSG00000030385	2900092C05Rik	-	RIKEN cDNA 2900092C05 gene	protein-coding	0.005000	0.447761	
mm_43016.1	chr5	123907205	123907405	+	1	NA	NA	NA	30	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.130000	0.686567	
mm_100082.1	chr11	115466651	115466851	+	1	NA	NA	NA	4278	NM_001080934	217316	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	0.000000	0.437811	
mm_156759.1	chrX	160502416	160502616	+	1	NA	NA	NA	82	NM_001177878	110094	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	0.060000	0.646766	-89(GCCTAGTAAAGC,-,0.00)
mm_131613.1	chr16	19760140	19760340	+	1	NA	NA	NA	6	NM_001159407	108105	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	0.055000	0.656716	
mm_102017.1	chr11	51635754	51635954	-	1	NA	NA	NA	42	NM_025346	66089	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	0.135000	0.686567	
mm_32839.1	chr4	117835219	117835419	+	1	NA	NA	NA	61	NM_008135	14664	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	0.050000	0.592040	
mm_21889.1	chr2	166155278	166155478	-	1	NA	NA	NA	-93	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.080000	0.597015	
mm_6603.1	chr1	75317501	75317701	-	1	NA	NA	NA	36	NM_001110831	13437	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	0.110000	0.706468	
mm_1269.1	chr1	63273117	63273317	+	1	NA	NA	NA	-52	NM_028673	73884	Mm.86986	NM_028673	ENSMUSG00000027520	Zdbf2	4930431J08Rik|9330107J05Rik	zinc finger, DBF-type containing 2	protein-coding	0.140000	0.771144	
mm_56590.1	chr6	108185470	108185670	-	1	NA	NA	NA	13	NM_145937	58911	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	0.065000	0.567164	
mm_25303.1	chr3	105977689	105977889	+	1	NA	NA	NA	3987	NM_007696	12659	Mm.431947	NM_007696	ENSMUSG00000074340	Ovgp1	120kDa|AU016433|AU019448|Chit5|MOGP|OGP|muc9	oviductal glycoprotein 1	protein-coding	0.020000	0.457711	
mm_53337.1	chr6	129237165	129237365	+	1	NA	NA	NA	780	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.005000	0.422886	
mm_141032.1	chr17	25273195	25273395	-	1	NA	NA	NA	136	NM_001177610	22196	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|F830028O17Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	0.165000	0.761194	
mm_4258.1	chr1	171418940	171419140	+	1	NA	NA	NA	7	NM_001164525	226654	Mm.46366	NM_001164525	ENSMUSG00000103711	Tstd1	AV065366|EG226654|Gm4848|KAT	thiosulfate sulfurtransferase (rhodanese)-like domain containing 1	protein-coding	0.035000	0.567164	
mm_5456.1	chr1	36274383	36274583	-	1	NA	NA	NA	-1058	NM_153408	214854	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.010000	0.517413	
mm_165246.1	chr2	69766043	69766243	+	1	NA	NA	NA	23343	NM_001077684	75051	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding	0.015000	0.432836	
mm_93392.1	chr10	107485984	107486184	-	1	NA	NA	NA	50	NM_008656	17877	Mm.4984	NM_008656	ENSMUSG00000000435	Myf5	B130010J22Rik|Myf-5|bHLHc2	myogenic factor 5	protein-coding	0.020000	0.567164	
mm_30410.1	chr3	152255264	152255464	-	1	NA	NA	NA	10956	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.010000	0.398010	
mm_148423.1	chr19	3938081	3938281	+	1	NA	NA	NA	2995	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.000000	0.323383	
mm_29820.1	chr3	129225432	129225632	-	1	NA	NA	NA	11600	NM_001287048	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.030000	0.527363	
mm_11221.1	chr2	29761461	29761661	+	1	NA	NA	NA	33	NM_001177392	433416	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	OTTMUSG00000012686	predicted gene 13547	protein-coding	0.035000	0.547264	
mm_100501.1	chr11	120484574	120484774	+	1	NA	NA	NA	5	NM_027204	56282	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	0.100000	0.681592	
mm_164682.1	chr17	47509384	47509584	+	1	NA	NA	NA	4433	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.437811	
mm_17477.1	chr2	28561086	28561286	-	1	NA	NA	NA	2217	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.020000	0.587065	
mm_85546.1	chr9	106685244	106685444	-	1	NA	NA	NA	472	NM_011573	21767	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.075000	0.661692	-62(GTCCCTTTAAGG,-,0.00),-61(TCCCTTTAAGGG,-,0.00),-60(CCCTTTAAGGGC,+,0.00),-59(CCTTTAAGGGCC,+,0.00)
mm_106320.1	chr11	118303407	118303607	-	1	NA	NA	NA	-13263	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.010000	0.547264	
mm_91991.1	chr10	62071544	62071744	-	1	NA	NA	NA	39369	NM_027251	69894	Mm.294126	NM_027251	ENSMUSG00000020083	2010107G23Rik	AA545165	RIKEN cDNA 2010107G23 gene	protein-coding	0.025000	0.532338	
mm_150373.1	chr19	34922278	34922478	+	1	NA	NA	NA	20	NM_183046	240641	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|B130024C23|C330014J10Rik|Mphosph1|magoo	kinesin family member 20B	protein-coding	0.085000	0.651741	
mm_105690.1	chr11	107763060	107763260	-	1	NA	NA	NA	31304	NM_019431	54377	Mm.103724	NM_019431	ENSMUSG00000020723	Cacng4	AI413107|AW491861	calcium channel, voltage-dependent, gamma subunit 4	protein-coding	0.005000	0.527363	-90(CCCCATAAATGG,-,0.00),-88(CCATAAATGGCC,+,0.00)
mm_11927.1	chr2	52120885	52121085	+	1	NA	NA	NA	48148	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.000000	0.323383	-3(CCTCTTATAGAT,+,0.00)
mm_165070.1	chr19	44407446	44407646	-	1	NA	NA	NA	163	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.060000	0.582090	-48(CCCTTTAAAATC,+,0.00),-47(CCTTTAAAATCC,+,0.00)
mm_76258.1	chr8	83741082	83741282	-	1	NA	NA	NA	129	NM_001163029	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.085000	0.681592	-33(CTGCATAAAAGC,-,0.00)
mm_133817.1	chr16	95718889	95719089	+	1	NA	NA	NA	16582	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.055000	0.512438	
mm_155766.1	chrX	96168364	96168564	+	1	NA	NA	NA	-71462	NR_030718	100038363	Mm.30815	NR_030718	ENSMUSG00000078122	F630028O10Rik	ENSMUSG00000065522|Gm14924|OTTMUSG00000018496|mir-223	RIKEN cDNA F630028O10 gene	ncRNA	0.000000	0.388060	
mm_166979.1	chr7	45212003	45212203	-	1	NA	NA	NA	-220	NM_015789	50722	Mm.27287	NM_015789	ENSMUSG00000030792	Dkkl1	AI414495|SGY|SGY-1|SGY1|Soggy|mSgy	dickkopf-like 1	protein-coding	0.035000	0.487562	
mm_164872.1	chr18	57468606	57468806	+	1	NA	NA	NA	220	NM_001134697	629147	Mm.57415	NM_001134697	ENSMUSG00000069372	Ctxn3	ENSMUSG00000069372	cortexin 3	protein-coding	0.025000	0.517413	-63(GGGTTTTAATGG,-,0.00)
mm_117744.1	chr13	95891624	95891824	-	1	NA	NA	NA	198	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.125000	0.746269	
mm_159608.1	chr4	131921638	131921838	+	1	NA	NA	NA	-33	NM_001201367	623230	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.160000	0.791045	
mm_55198.1	chr6	52204157	52204357	-	1	NA	NA	NA	330	NM_010453	15402	Mm.173	NM_010453	ENSMUSG00000038253	Hoxa5	Hox-1.3	homeobox A5	protein-coding	0.075000	0.512438	
mm_160984.1	chr11	103774284	103774484	+	1	NA	NA	NA	209	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding	0.065000	0.681592	
mm_141058.1	chr17	25754133	25754333	-	1	NA	NA	NA	94	NM_018857	56047	Mm.17510	NM_018857	ENSMUSG00000063011	Msln	MPF	mesothelin	protein-coding	0.015000	0.562189	
mm_85721.1	chr9	108305850	108306050	-	1	NA	NA	NA	209	NM_133986	102791	Mm.24670	NM_133986	ENSMUSG00000039461	Tcta	9130410M22Rik|AW553637|C85065|Tctal	T cell leukemia translocation altered gene	protein-coding	0.085000	0.636816	
mm_120010.1	chr14	55672212	55672412	+	1	NA	NA	NA	77	NM_177992	105446	Mm.390685	NM_177992	ENSMUSG00000002326	Gmpr2	1810008P16Rik|5730544D12Rik|AA959850|GMPR 2	guanosine monophosphate reductase 2	protein-coding	0.055000	0.532338	
mm_122420.1	chr14	41185109	41185309	-	1	NA	NA	NA	-11	NM_009160	20390	Mm.1321	NM_009160	ENSMUSG00000021795	Sftpd	AI573415|SP-D|Sfpd|Sftp4	surfactant associated protein D	protein-coding	0.005000	0.492537	13(GCATAAATAGCC,+,0.00)
mm_81297.1	chr9	108338986	108339186	+	1	NA	NA	NA	6	NM_001329528	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.045000	0.587065	
mm_40657.1	chr5	65135120	65135320	+	1	NA	NA	NA	3989	NM_175174	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.000000	0.398010	-27(GTCCTTAAAGGA,-,0.00)
mm_39813.1	chr5	30674066	30674266	+	1	NA	NA	NA	7280	NR_126074	12615	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	0.025000	0.522388	-36(CCCTTAAAACTG,+,0.00)
mm_122506.1	chr14	46831921	46832121	-	1	NA	NA	NA	-223	NM_026832	68755	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	0.045000	0.562189	
mm_75881.1	chr8	70776626	70776826	-	1	NA	NA	NA	-14	NM_008841	18709	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)	protein-coding	0.150000	0.751244	
mm_90564.1	chr10	128225852	128226052	+	1	NA	NA	NA	142	NM_008600	17339	Mm.31625	NM_008600	ENSMUSG00000025389	Mip	Aqp0|Cat|Cts|Hfi|Lop|MIP26|MP26|Svl|shrivelled	major intrinsic protein of lens fiber	protein-coding	0.015000	0.572139	
mm_85380.1	chr9	103225987	103226187	-	1	NA	NA	NA	4199	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.010000	0.547264	
mm_19576.1	chr2	101643816	101644016	-	1	NA	NA	NA	5616	NM_009019	19373	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0.015000	0.482587	
mm_47533.1	chr5	124204136	124204336	-	1	NA	NA	NA	-17054	NM_001289472	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.030000	0.567164	
mm_115864.1	chr13	21453585	21453785	-	1	NA	NA	NA	42	NM_001013786	432731	Mm.390557	NM_001013786	ENSMUSG00000022228	Zscan26	BC068174|Zfp187|Znf187	zinc finger and SCAN domain containing 26	protein-coding	0.075000	0.601990	
mm_100344.1	chr11	118401955	118402155	+	1	NA	NA	NA	-124	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.010000	0.542289	
mm_47481.1	chr5	123749306	123749506	-	1	NA	NA	NA	8	NM_001005525	208606	Mm.276341	NM_025438	ENSMUSG00000029422	Rsrc2	1500011J06Rik	arginine/serine-rich coiled-coil 2	protein-coding	0.075000	0.557214	
mm_77225.1	chr8	115703455	115703655	-	1	NA	NA	NA	3339	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.000000	0.308458	-17(CAGTTTTAAAGG,-,0.00)
mm_71670.1	chr8	60674407	60674607	+	1	NA	NA	NA	18950	NM_001177882	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	0.000000	0.383085	16(TCCTCTTTAAGG,-,0.00),57(TACTTTAAAAGG,-,0.00)
mm_101145.1	chr11	16508397	16508597	-	1	NA	NA	NA	-13	NM_001109971	20335	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0.040000	0.407960	
mm_49265.1	chr6	17464073	17464273	+	1	NA	NA	NA	216	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.085000	0.676617	
mm_83668.1	chr9	49715969	49716169	-	1	NA	NA	NA	83000	NM_001081445	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding	0.015000	0.383085	
mm_70692.1	chr8	15027072	15027272	+	1	NA	NA	NA	16147	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.025000	0.517413	
mm_2499.1	chr1	106171726	106171926	+	1	NA	NA	NA	-43	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.175000	0.756219	
mm_107024.1	chr12	12909322	12909522	+	1	NA	NA	NA	32414	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.000000	0.452736	
mm_64111.1	chr7	141061223	141061423	+	1	NA	NA	NA	49	NM_177897	330671	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.125000	0.726368	
mm_15233.1	chr2	154603866	154604066	+	1	NA	NA	NA	-293	NM_021534	59038	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	0.025000	0.457711	
mm_610.1	chr1	39986529	39986729	+	1	NA	NA	NA	85716	NM_008696	26921	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.010000	0.398010	69(CTTTTAAAACAC,+,0.00)
mm_72185.1	chr8	72351403	72351603	+	1	NA	NA	NA	32441	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.010000	0.522388	-33(ACATATATAAGG,-,0.00)
mm_120464.1	chr14	65971033	65971233	+	1	NA	NA	NA	2650	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.010000	0.507463	
mm_8665.1	chr1	156655646	156655846	-	1	NA	NA	NA	18593	NM_023141	30935	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.015000	0.517413	
mm_93278.1	chr10	96077644	96077844	-	1	NA	NA	NA	137081	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.005000	0.318408	-100(CCTTTAATAGTG,+,0.00),-57(AGGCCTAAAAGC,-,0.00)
mm_78321.1	chr9	24541984	24542184	+	1	NA	NA	NA	-38944	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.010000	0.373134	
mm_22745.1	chr3	19957075	19957275	+	1	NA	NA	NA	121	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.015000	0.398010	
mm_80758.1	chr9	95557146	95557346	+	1	NA	NA	NA	-2571	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.020000	0.472637	
mm_56080.1	chr6	87255770	87255970	-	1	NA	NA	NA	79905	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.040000	0.522388	
mm_93732.1	chr10	120092620	120092820	-	1	NA	NA	NA	20245	NM_080446	117599	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.030000	0.462687	
mm_139082.1	chr17	46681938	46682138	+	1	NA	NA	NA	858	NM_001277312	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.015000	0.532338	
mm_27898.1	chr3	79458289	79458489	-	1	NA	NA	NA	109290	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.025000	0.552239	
mm_147490.1	chr18	47368384	47368584	-	1	NA	NA	NA	384	NM_018744	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.020000	0.373134	
mm_139438.1	chr17	53769739	53769939	+	1	NA	NA	NA	53330	NR_073205	211496	Mm.251553	NM_177599	ENSMUSG00000062036	4932415M13Rik	-	RIKEN cDNA 4932415M13 gene	ncRNA	0.010000	0.462687	
mm_56752.1	chr6	115994842	115995042	-	1	NA	NA	NA	63	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.145000	0.840796	
mm_2003.1	chr1	87126960	87127160	+	1	NA	NA	NA	2052	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.040000	0.547264	
mm_87655.1	chr10	58476230	58476430	+	1	NA	NA	NA	-21607	NM_001162956	76138	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.010000	0.437811	
mm_48745.1	chr5	147875529	147875729	-	1	NA	NA	NA	15001	NM_025624	66537	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.020000	0.492537	
mm_36895.1	chr4	107680823	107681023	-	1	NA	NA	NA	3239	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.010000	0.437811	
mm_155468.1	chrX	73639304	73639504	+	1	NA	NA	NA	-37	NM_029352	75590	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	0.075000	0.661692	
mm_91077.1	chr10	19011718	19011918	-	1	NA	NA	NA	145	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.015000	0.457711	
mm_60468.1	chr7	44477950	44478150	+	1	NA	NA	NA	-6467	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.477612	
mm_18184.1	chr2	45111615	45111815	-	1	NA	NA	NA	-545	NR_110571	433424	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|OTTMUSG00000012358|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0.010000	0.422886	
mm_155056.1	chrX	42360627	42360827	+	1	NA	NA	NA	-141838	NM_011364	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	0.030000	0.502488	
mm_116019.1	chr13	24831243	24831443	-	1	NA	NA	NA	146	NM_025790	66834	Mm.2125	NM_025790	ENSMUSG00000006717	Acot13	0610006O17Rik|Them2	acyl-CoA thioesterase 13	protein-coding	0.075000	0.547264	
mm_26082.1	chr3	136670771	136670971	+	1	NA	NA	NA	805	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.125000	0.716418	
mm_34295.1	chr4	141614489	141614689	+	1	NA	NA	NA	219	NR_033566	100165	Mm.439819	NR_033566	ENSMUSG00000073731	AI507597	-	expressed sequence AI507597	ncRNA	0.040000	0.601990	
mm_27031.1	chr3	26153876	26154076	-	1	NA	NA	NA	-669	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.030000	0.437811	
mm_154884.1	chrX	20703837	20704037	+	1	NA	NA	NA	28	NM_145628	236733	Mm.34489	NM_145628	ENSMUSG00000031066	Usp11	6230415D12Rik|mKIAA4085	ubiquitin specific peptidase 11	protein-coding	0.070000	0.626866	
mm_137172.1	chr17	23815117	23815317	+	1	NA	NA	NA	12030	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.035000	0.587065	
mm_3276.1	chr1	136570544	136570744	+	1	NA	NA	NA	-54257	NM_177643	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.030000	0.507463	
mm_173146.1	chrX	22534373	22534573	-	1	NA	NA	NA	72877	NR_033731	76705	Mm.399727	NM_029707		Ppp1r2-ps7	1700023I07Rik	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 7	pseudo	0.030000	0.517413	-14(GGATTTAAAAAG,-,0.00)
mm_19182.1	chr2	84393253	84393453	-	1	NA	NA	NA	31913	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.005000	0.388060	
mm_26630.1	chr3	152912274	152912474	+	1	NA	NA	NA	69833	NM_012028	26938	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.025000	0.567164	
mm_114424.1	chr13	64432418	64432618	+	1	NA	NA	NA	-35	NM_053180	105278	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	0.060000	0.587065	
mm_155778.1	chrX	96455397	96455597	+	1	NA	NA	NA	61	NM_010417	15203	Mm.277092	NM_010417	ENSMUSG00000031209	Heph	C130006F04Rik|Cpl|mKIAA0698|sla	hephaestin	protein-coding	0.010000	0.497512	
mm_77381.1	chr8	119840482	119840682	-	1	NA	NA	NA	-3	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.115000	0.696517	
mm_88432.1	chr10	77530277	77530477	+	1	NA	NA	NA	29	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.020000	0.577114	
mm_4975.1	chr1	191325892	191326092	+	1	NA	NA	NA	27	NM_025864	66950	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0.100000	0.646766	
mm_98496.1	chr11	94951617	94951817	+	1	NA	NA	NA	15493	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.010000	0.427861	
mm_16796.1	chr2	10097914	10098114	-	1	NA	NA	NA	17402	NM_025280	16588	Mm.35498	NM_025280	ENSMUSG00000037262	Kin	Kin17	Kin17 DNA and RNA binding protein	protein-coding	0.030000	0.487562	
mm_65330.1	chr7	24978229	24978429	-	1	NA	NA	NA	-5601	NM_010261	14470	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.015000	0.601990	
mm_26540.1	chr3	146149736	146149936	+	1	NA	NA	NA	3	NM_026656	68279	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.080000	0.676617	-5(CCCTTTATAAGG,+,0.00),-5(CCCTTTATAAGG,-,0.00),-3(CTTTATAAGGGC,+,0.00)
mm_45440.1	chr5	67394257	67394457	-	1	NA	NA	NA	33442	NM_001164806	666938	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.010000	0.373134	
mm_34012.1	chr4	137993391	137993591	+	1	NA	NA	NA	35	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.105000	0.671642	
mm_1241.1	chr1	62796192	62796392	+	1	NA	NA	NA	-1560	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.015000	0.393035	
mm_156388.1	chrX	139800636	139800836	+	1	NA	NA	NA	-72	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.015000	0.497512	
mm_155069.1	chrX	43590830	43591030	+	1	NA	NA	NA	-59	NM_001195271	637093	Mm.368463	NM_001195271	ENSMUSG00000078320	Tex13c1	Gm362|Tex13c	TEX13 family member C1	protein-coding	0.010000	0.447761	
mm_46907.1	chr5	114274157	114274357	-	1	NA	NA	NA	-496	NM_148935	116810	Mm.17709	NM_148935	ENSMUSG00000042002	Foxn4	-	forkhead box N4	protein-coding	0.115000	0.716418	
mm_54620.1	chr6	38533555	38533755	-	1	NA	NA	NA	-1206	NM_025363	66117	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	0.075000	0.567164	
mm_105104.1	chr11	100957888	100958088	-	1	NA	NA	NA	12629	NM_008986	19285	Mm.21864	NM_008986	ENSMUSG00000004044	Ptrf	2310075E07Rik|AW546441|Cav-p60|Cavin	polymerase I and transcript release factor	protein-coding	0.005000	0.492537	
mm_156401.1	chrX	139809015	139809215	+	1	NA	NA	NA	8307	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.025000	0.512438	
mm_140705.1	chr17	14690055	14690255	-	1	NA	NA	NA	4107	NM_011581	21826	Mm.26688	NM_011581	ENSMUSG00000023885	Thbs2	TSP2|Thbs-2	thrombospondin 2	protein-coding	0.040000	0.547264	
mm_69323.1	chr7	128499733	128499933	-	1	NA	NA	NA	-23750	NM_013863	29810	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0.020000	0.507463	
mm_39402.1	chr5	14144348	14144548	+	1	NA	NA	NA	119172	NM_011348	20349	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	0.010000	0.308458	
mm_20447.1	chr2	129364660	129364860	-	1	NA	NA	NA	-5142	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.010000	0.407960	
mm_121257.1	chr14	103059240	103059440	+	1	NA	NA	NA	-10876	NM_001033242	211286	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0.010000	0.502488	
mm_53594.1	chr6	138140209	138140409	+	1	NA	NA	NA	-228	NM_019946	56615	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.020000	0.442786	
mm_127370.1	chr15	100761757	100761957	+	1	NA	NA	NA	110	NM_021530	59033	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0.115000	0.681592	
mm_161328.1	chr14	50320516	50320716	-	1	NA	NA	NA	217	NM_146664	258658	Mm.377621	NM_146664	ENSMUSG00000045306	Olfr734	MOR242-1	olfactory receptor 734	protein-coding	0.005000	0.407960	
mm_148542.1	chr19	4621042	4621242	+	1	NA	NA	NA	2813	NR_105952	102466780		NR_105952	ENSMUSG00000098346	Mir6986	Gm27709|mmu-mir-6986	microRNA 6986	ncRNA	0.020000	0.562189	
mm_31418.1	chr4	48051187	48051387	+	1	NA	NA	NA	41	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.040000	0.562189	
mm_134101.1	chr16	9994966	9995166	-	1	NA	NA	NA	-2533	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.095000	0.686567	
mm_57346.1	chr6	124753916	124754116	-	1	NA	NA	NA	2471	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.005000	0.487562	-34(TGTTTTATAAGG,-,0.00)
mm_149694.1	chr19	21272429	21272629	+	1	NA	NA	NA	251	NM_009551	22682	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.150000	0.781095	
mm_36123.1	chr4	58912627	58912827	-	1	NA	NA	NA	-2	NM_172381	230249	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|mKIAA0368	expressed sequence AI314180	protein-coding	0.125000	0.691542	
mm_169046.1	chr1	3155952	3156152	+	1	NA	NA	NA	515446	NM_001011874	497097	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.035000	0.497512	
mm_93316.1	chr10	98914062	98914262	-	1	NA	NA	NA	-990	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.145000	0.786070	
mm_71902.1	chr8	70064731	70064931	+	1	NA	NA	NA	-8093	NM_001293795	107770	Mm.37974	NM_181540	ENSMUSG00000036151	Tm6sf2	-	transmembrane 6 superfamily member 2	protein-coding	0.010000	0.477612	
mm_78836.1	chr9	44240638	44240838	+	1	NA	NA	NA	61	NM_001081369	270150	Mm.347681	NM_001081369	ENSMUSG00000070306	Ccdc153	-	coiled-coil domain containing 153	protein-coding	0.000000	0.492537	
mm_82155.1	chr9	123780251	123780451	+	1	NA	NA	NA	13140	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.005000	0.447761	
mm_113379.1	chr13	33015831	33016031	+	1	NA	NA	NA	11390	NM_009256	20723	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0.000000	0.442786	
mm_100074.1	chr11	115462277	115462477	+	1	NA	NA	NA	-96	NM_001080934	217316	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	0.015000	0.567164	
mm_101519.1	chr11	32542644	32542844	-	1	NA	NA	NA	9478	NM_009288	20868	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.005000	0.542289	
mm_172659.1	chr8	40883536	40883736	+	1	NA	NA	NA	21269	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.055000	0.527363	-45(GAGTATAAAAGG,-,0.00)
mm_64944.1	chr7	16313958	16314158	-	1	NA	NA	NA	4475	NM_133234	170770	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.140000	0.736318	-33(GGCTATAAATAG,-,0.00),-31(CTATAAATAGCC,+,0.00)
mm_114394.1	chr13	63274301	63274501	+	1	NA	NA	NA	22746	NR_045794	100504114	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	0.015000	0.398010	
mm_9975.1	chr1	191217846	191218046	-	1	NA	NA	NA	-34613	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.005000	0.502488	
mm_162083.1	chrX	33702258	33702458	-	1	NA	NA	NA	-9	NM_001145038	100040732	Mm.465135	NM_001145038	ENSMUSG00000078324	Btbd35f14	Gm2933	BTB domain containing 35, family member 14	protein-coding	0.010000	0.487562	
mm_39935.1	chr5	31698642	31698842	+	1	NA	NA	NA	692	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.010000	0.368159	
mm_126707.1	chr15	85231387	85231587	+	1	NA	NA	NA	25479	NM_010180	14114	Mm.297992	NM_010180	ENSMUSG00000006369	Fbln1	-	fibulin 1	protein-coding	0.020000	0.502488	
mm_112282.1	chr12	114392139	114392339	-	1	NA	NA	NA	77227	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.005000	0.447761	
mm_106981.1	chr12	9580704	9580904	+	1	NA	NA	NA	6362	NM_011859	23967	Mm.45055	NM_011859	ENSMUSG00000048387	Osr1	Odd1|Osr	odd-skipped related 1 (Drosophila)	protein-coding	0.070000	0.597015	
mm_109731.1	chr12	116485649	116485849	+	1	NA	NA	NA	29	NM_011215	19276	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	0.135000	0.741294	
mm_104439.1	chr11	94976078	94976278	-	1	NA	NA	NA	149	NM_009161	20391	Mm.18709	NM_009161	ENSMUSG00000001508	Sgca	50DAG|Asg	sarcoglycan, alpha (dystrophin-associated glycoprotein)	protein-coding	0.010000	0.537313	
mm_112200.1	chr12	113426596	113426796	-	1	NA	NA	NA	-62869	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.015000	0.552239	73(TGCTCTTAAAGC,-,0.00),74(GCTCTTAAAGCT,+,0.00)
mm_86312.1	chr9	122843921	122844121	-	1	NA	NA	NA	21985	NM_173364	235682	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	0.000000	0.537313	
mm_52380.1	chr6	113124239	113124439	+	1	NA	NA	NA	19404	NM_173005	72895	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0.010000	0.417910	
mm_96867.1	chr11	70166675	70166875	+	1	NA	NA	NA	152	NM_010796	17312	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	0.015000	0.562189	
mm_45579.1	chr5	73651718	73651918	-	1	NA	NA	NA	438	NM_178387	73472	Mm.87067	NM_178387	ENSMUSG00000029155	Spata18	1700067I02Rik	spermatogenesis associated 18	protein-coding	0.035000	0.572139	
mm_114277.1	chr13	58263883	58264083	+	1	NA	NA	NA	10205	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.035000	0.522388	
mm_135260.1	chr16	37856328	37856528	-	1	NA	NA	NA	-11972	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.005000	0.527363	
mm_162173.1	chrX	101420766	101420966	-	1	NA	NA	NA	-181	NM_001177987	56364	Mm.23458	NM_019831	ENSMUSG00000031310	Zmym3	9030216B10Rik|AW122925|DXS6673El|Zfp261	zinc finger, MYM-type 3	protein-coding	0.015000	0.502488	
mm_166371.1	chr5	125532435	125532635	+	1	NA	NA	NA	117	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0.185000	0.830846	
mm_136042.1	chr16	78357216	78357416	-	1	NA	NA	NA	19441	NR_002700	654432	Mm.458574	NR_002700	ENSMUSG00000044645	Gm7334	EG654432	B-cell translocation gene 3 pseudogene	pseudo	0.000000	0.268657	
mm_106477.1	chr11	120139396	120139596	-	1	NA	NA	NA	11855	NM_001164799	72055	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0.035000	0.522388	
mm_125103.1	chr15	27770874	27771074	+	1	NA	NA	NA	-89432	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.030000	0.621891	
mm_25921.1	chr3	131159623	131159823	+	1	NA	NA	NA	46932	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.005000	0.402985	
mm_52201.1	chr6	100704652	100704852	+	1	NA	NA	NA	18	NM_198612	232313	Mm.272037	NM_198612	ENSMUSG00000030074	Gxylt2	Glt8d4|Gm152	glucoside xylosyltransferase 2	protein-coding	0.120000	0.726368	
mm_58321.1	chr6	146475923	146476123	-	1	NA	NA	NA	26200	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.010000	0.348259	
mm_138005.1	chr17	33824480	33824680	+	1	NA	NA	NA	8	NR_103516	66416	Mm.29513	NM_023202	ENSMUSG00000041881	Ndufa7	14.5kDa|2400007M02Rik|CI-B14.5a	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	protein-coding	0.110000	0.611940	-63(CCTTTTATAGTC,+,0.00)
mm_132426.1	chr16	35612281	35612481	+	1	NA	NA	NA	71019	NM_013661	20357	Mm.42015	NM_013661	ENSMUSG00000052133	Sema5b	AI893641|SemG|Semag|mKIAA1445	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	protein-coding	0.005000	0.383085	
mm_11474.1	chr2	32381886	32382086	+	1	NA	NA	NA	-71	NM_198001	73737	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0.110000	0.736318	
mm_149145.1	chr19	9005606	9005806	+	1	NA	NA	NA	-12198	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.005000	0.497512	87(GGACATTAAAGG,-,0.00)
mm_163262.1	chr11	113094204	113094404	+	1	NA	NA	NA	107534	NR_015556	72386	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.035000	0.542289	
mm_133106.1	chr16	65473628	65473828	+	1	NA	NA	NA	-46901	NM_008849	18736	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.005000	0.616915	
mm_74680.1	chr8	14090192	14090392	-	1	NA	NA	NA	35	NM_001034862	234086	Mm.268896	NM_001034862	ENSMUSG00000051978	Erich1	-	glutamate rich 1	protein-coding	0.100000	0.631841	
mm_12317.1	chr2	69380373	69380573	+	1	NA	NA	NA	11	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.025000	0.557214	
mm_83717.1	chr9	50756377	50756577	-	1	NA	NA	NA	3506	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.020000	0.482587	
mm_82753.1	chr9	26860531	26860731	-	1	NA	NA	NA	192	NM_001113323	70893	Mm.78118	NM_001113323	ENSMUSG00000031966	Glb1l3	4921509F24Rik	galactosidase, beta 1 like 3	protein-coding	0.020000	0.542289	
mm_49114.1	chr6	8509347	8509547	+	1	NA	NA	NA	-153	NM_133236	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.155000	0.736318	
mm_171794.1	chr5	117287466	117287666	-	1	NA	NA	NA	-2	NM_018858	23980	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	0.115000	0.691542	
mm_47013.1	chr5	115484269	115484469	-	1	NA	NA	NA	-72	NM_001167691	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.045000	0.497512	
mm_138206.1	chr17	34301373	34301573	+	1	NA	NA	NA	-4394	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.015000	0.507463	
mm_134537.1	chr16	19706195	19706395	-	1	NA	NA	NA	70	NM_177356	239739	Mm.258059	NM_177356	ENSMUSG00000041247	Lamp3	1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403	lysosomal-associated membrane protein 3	protein-coding	0.000000	0.487562	
mm_81074.1	chr9	106222514	106222714	+	1	NA	NA	NA	16	NM_031178	81897	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	0.010000	0.497512	
mm_29768.1	chr3	127225919	127226119	-	1	NA	NA	NA	64714	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.040000	0.527363	
mm_123276.1	chr14	61370665	61370865	-	1	NA	NA	NA	-10320	NM_026598	68177	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0.010000	0.298507	
mm_121825.1	chr14	20479811	20480011	-	1	NA	NA	NA	222	NM_001110794	11750	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	0.080000	0.646766	
mm_12881.1	chr2	84678493	84678693	+	1	NA	NA	NA	191	NM_025885	381379	Mm.219643	NM_025885	ENSMUSG00000027080	Med19	2410018M14Rik|3110040A13Rik|LCMR1	mediator complex subunit 19	protein-coding	0.065000	0.666667	
mm_22914.1	chr3	31094577	31094777	+	1	NA	NA	NA	-381	NM_011386	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.150000	0.791045	
mm_131191.1	chr16	7224313	7224513	+	1	NA	NA	NA	154578	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.050000	0.592040	
mm_98678.1	chr11	96285129	96285329	+	1	NA	NA	NA	-1417	NM_010460	15415	Mm.390366	NM_010460	ENSMUSG00000038721	Hoxb7	AI325018|Hox-2.3	homeobox B7	protein-coding	0.030000	0.422886	45(CGCCTGAAAAGG,-,0.00)
mm_155158.1	chrX	52926928	52927128	+	1	NA	NA	NA	14814	NM_001290546	70998	Mm.26870	NM_027642	ENSMUSG00000025626	Phf6	2700007B13Rik|4931428F02Rik|mKIAA1823	PHD finger protein 6	protein-coding	0.020000	0.552239	
mm_8268.1	chr1	139377002	139377202	-	1	NA	NA	NA	-26	NM_133239	170788	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	0.015000	0.537313	
mm_69316.1	chr7	128461073	128461273	-	1	NA	NA	NA	340	NM_009383	21843	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.075000	0.716418	
mm_144480.1	chr18	23954612	23954812	+	1	NA	NA	NA	24	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.125000	0.731343	
mm_123523.1	chr14	66713541	66713741	-	1	NA	NA	NA	78390	NM_001271760	11549	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	0.015000	0.398010	
mm_8412.1	chr1	152055192	152055392	-	1	NA	NA	NA	35028	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik|ENSMUSG00000073540	RIKEN cDNA 1700025G04 gene	protein-coding	0.010000	0.507463	
mm_141883.1	chr17	34860480	34860680	-	1	NA	NA	NA	1934	NM_001142706	14962	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0.020000	0.542289	
mm_58955.1	chr7	18839880	18840080	+	1	NA	NA	NA	14	NM_153760	243864	Mm.233503	NM_153760	ENSMUSG00000040987	Mill2	Micb	MHC I like leukocyte 2	protein-coding	0.010000	0.482587	
mm_151021.1	chr19	46846754	46846954	+	1	NA	NA	NA	85245	NM_001102471	94219	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0.010000	0.512438	
mm_144980.1	chr18	37955590	37955790	+	1	NA	NA	NA	131	NM_153793	225392	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	0.100000	0.691542	
mm_101400.1	chr11	26593628	26593828	-	1	NA	NA	NA	192	NM_027260	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.065000	0.731343	
mm_127853.1	chr15	7923494	7923694	-	1	NA	NA	NA	108044	NM_001301357	14573	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0.010000	0.402985	
mm_158249.1	chrX	107816188	107816388	-	1	NA	NA	NA	46	NM_025921	67028	Mm.37274	NM_025921	ENSMUSG00000031242	2610002M06Rik	8430408J07Rik|AI876413|Chmp1b2	RIKEN cDNA 2610002M06 gene	protein-coding	0.095000	0.641791	
mm_48879.1	chr5	151127460	151127660	-	1	NA	NA	NA	62633	NM_001163493	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.015000	0.477612	-64(CCTCTTAGAGCT,+,0.00)
mm_121553.1	chr14	122477125	122477325	+	1	NA	NA	NA	1841	NM_009574	22772	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0.020000	0.402985	89(GTGTTTTTAAAG,-,0.00)
mm_19675.1	chr2	103454358	103454558	-	1	NA	NA	NA	30390	NM_010125	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.005000	0.313433	
mm_3144.1	chr1	135144536	135144736	+	1	NA	NA	NA	-2198	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.025000	0.532338	
mm_156899.1	chrX	167207399	167207599	+	1	NA	NA	NA	1719	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.030000	0.378109	
mm_75229.1	chr8	39619138	39619338	-	1	NA	NA	NA	23440	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.278607	38(TCTTTTATATAG,+,0.00)
mm_52685.1	chr6	118054735	118054935	+	1	NA	NA	NA	-11550	NM_027526	70727	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	0.005000	0.432836	
mm_70614.1	chr8	13435080	13435280	+	1	NA	NA	NA	-279	NM_001143671	272465	Mm.250502	NM_001143671	ENSMUSG00000038457	Tmem255b	Fam70b|Gm687	transmembrane protein 255B	protein-coding	0.030000	0.587065	
mm_103852.1	chr11	83126528	83126728	-	1	NA	NA	NA	9783	NM_011407	20555	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0.025000	0.477612	
mm_10577.1	chr2	18086174	18086374	+	1	NA	NA	NA	21689	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.025000	0.388060	
mm_159238.1	chr2	146863560	146863760	+	1	NA	NA	NA	7771	NM_001033298	228730	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	0.005000	0.268657	37(TTTTTTAAAGAG,+,0.00)
mm_55668.1	chr6	72521600	72521800	-	1	NA	NA	NA	-22691	NM_007599	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.010000	0.532338	
mm_109987.1	chr12	14148499	14148699	-	1	NA	NA	NA	3439	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	0.000000	0.348259	
mm_139320.1	chr17	48410134	48410334	+	1	NA	NA	NA	234	NM_207219	106821	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	0.075000	0.582090	
mm_82239.1	chr9	3259139	3259339	-	1	NA	NA	NA	-59426	NR_027988	114673	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0.010000	0.447761	
mm_140368.1	chr17	86963191	86963391	+	1	NA	NA	NA	180	NM_145491	104215	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.135000	0.810945	
mm_10473.1	chr2	14331407	14331607	+	1	NA	NA	NA	-56891	NM_001012305	277468	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0.015000	0.398010	
mm_97116.1	chr11	74770814	74771014	+	1	NA	NA	NA	51	NM_026197	67493	Mm.45748	NM_026197	ENSMUSG00000010554	Mettl16	2610100D03Rik|2810013M15Rik|A830095F14Rik|AI846133|Mett10d	methyltransferase like 16	protein-coding	0.090000	0.601990	
mm_102230.1	chr11	54916859	54917059	-	1	NA	NA	NA	14105	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.035000	0.592040	
mm_147955.1	chr18	67048091	67048291	-	1	NA	NA	NA	-40107	NM_177137	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.005000	0.417910	-52(ACGTTTTAAAGC,-,0.00)
mm_156507.1	chrX	147702921	147703121	+	1	NA	NA	NA	-148940	NM_001081173	210297	Mm.30506	NM_001081173	ENSMUSG00000031290	Lrch2	AI316885|mKIAA1495	leucine-rich repeats and calponin homology (CH) domain containing 2	protein-coding	0.000000	0.557214	
mm_125753.1	chr15	73750681	73750881	+	1	NA	NA	NA	2755	NM_008975	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.015000	0.537313	
mm_37417.1	chr4	122862884	122863084	-	1	NA	NA	NA	23073	NM_007598	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.005000	0.517413	
mm_15277.1	chr2	155247778	155247978	+	1	NA	NA	NA	11270	NM_001291108	67068	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	0.030000	0.467662	
mm_87522.1	chr10	53280168	53280368	+	1	NA	NA	NA	-2	NR_038015	100502820	Mm.55827	NR_038015		Gm19395	-	predicted gene, 19395	ncRNA	0.015000	0.393035	-40(TGTCATAAAAGC,-,0.00)
mm_52592.1	chr6	116671716	116671916	+	1	NA	NA	NA	2020	NM_178045	213391	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.010000	0.502488	
mm_83702.1	chr9	50659696	50659896	-	1	NA	NA	NA	-16	NM_145614	235339	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	0.075000	0.636816	
mm_160483.1	chr8	124433797	124433997	-	1	NA	NA	NA	39	NM_171824	209966	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	0.135000	0.721393	
mm_149583.1	chr19	15984978	15985178	+	1	NA	NA	NA	3	NR_045355	100502653	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0.130000	0.676617	
mm_79172.1	chr9	47852504	47852704	+	1	NA	NA	NA	-34396	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.010000	0.323383	
mm_145044.1	chr18	39773486	39773686	+	1	NA	NA	NA	89	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.060000	0.676617	
mm_116528.1	chr13	45819365	45819565	-	1	NA	NA	NA	145526	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.005000	0.427861	
mm_104773.1	chr11	98545802	98546002	-	1	NA	NA	NA	129	NM_011771	22780	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.150000	0.736318	-61(GTGCTTTAAAGC,-,0.00),-59(GCTTTAAAGCGG,+,0.00)
mm_53294.1	chr6	129036577	129036777	+	1	NA	NA	NA	-9224	NR_024262	232408	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.000000	0.507463	
mm_47063.1	chr5	116422565	116422765	-	1	NA	NA	NA	199	NM_030704	80888	Mm.21549	NM_030704	ENSMUSG00000041548	Hspb8	AU018630|AW413033|Cryac|D5Ucla4|E2IG1|H11|H11K|HSP20-like|HSP22	heat shock protein 8	protein-coding	0.025000	0.557214	
mm_122133.1	chr14	31160558	31160758	-	1	NA	NA	NA	7983	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.030000	0.601990	
mm_105419.1	chr11	103692349	103692549	-	1	NA	NA	NA	5261	NM_019650	56494	Mm.195451	NM_019650	ENSMUSG00000020946	Gosr2	2310032N09Rik|C76855|Gs27|SNARE|membrin	golgi SNAP receptor complex member 2	protein-coding	0.005000	0.328358	
mm_148414.1	chr19	3935377	3935577	+	1	NA	NA	NA	291	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.035000	0.676617	
mm_76968.1	chr8	106280922	106281122	-	1	NA	NA	NA	-1207	NR_126091	75044	Mm.445896	NR_126090		4930506A18Rik	-	RIKEN cDNA 4930506A18 gene	ncRNA	0.020000	0.572139	
mm_16119.1	chr2	169970696	169970896	+	1	NA	NA	NA	-7609	NR_131974	446211	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0.005000	0.487562	
mm_110555.1	chr12	55491357	55491557	-	1	NA	NA	NA	1190	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.010000	0.482587	
mm_100858.1	chr11	5866879	5867079	-	1	NA	NA	NA	5113	NM_001291857	11568	Mm.3317	NM_009636	ENSMUSG00000020473	Aebp1	ACLP	AE binding protein 1	protein-coding	0.010000	0.502488	
mm_99744.1	chr11	106516274	106516474	+	1	NA	NA	NA	15383	NR_030703	100216537		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.035000	0.482587	
mm_45185.1	chr5	52015383	52015583	-	1	NA	NA	NA	120534	NR_105845	102466648		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0.005000	0.353234	
mm_73699.1	chr8	111651489	111651689	+	1	NA	NA	NA	8146	NM_011742	22640	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0.010000	0.502488	
mm_16399.1	chr2	179976781	179976981	+	1	NA	NA	NA	28	NR_033782	66730	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	0.130000	0.746269	-35(GGCTCTTAAAAG,-,0.00),-34(GCTCTTAAAAGA,-,0.00),-33(CTCTTAAAAGAC,+,0.00)
mm_108277.1	chr12	78887624	78887824	+	1	NA	NA	NA	19214	NM_013738	27260	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	0.005000	0.422886	
mm_1492.1	chr1	71887889	71888089	+	1	NA	NA	NA	-123	NR_027658	667931	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	0.000000	0.577114	
mm_135229.1	chr16	36873332	36873532	-	1	NA	NA	NA	1394	NM_134111	106389	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0.000000	0.353234	
mm_154843.1	chrX	20364554	20364754	+	1	NA	NA	NA	173	NR_110967	19889	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	0.050000	0.671642	
mm_79551.1	chr9	57959897	57960097	+	1	NA	NA	NA	19862	NM_011352	20361	Mm.335187	NM_011352	ENSMUSG00000038264	Sema7a	2900057C09Rik|CDw108|H-Sema-L|M-Sema-L|Semal	sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A	protein-coding	0.010000	0.532338	
mm_155238.1	chrX	57212026	57212226	+	1	NA	NA	NA	-17	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.030000	0.492537	
mm_37983.1	chr4	133620649	133620849	-	1	NA	NA	NA	12680	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.025000	0.527363	
mm_13387.1	chr2	103969457	103969657	+	1	NA	NA	NA	0	NM_001142336	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.065000	0.651741	
mm_172020.1	chr6	115002946	115003146	+	1	NA	NA	NA	34828	NM_026894	68971	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	0.030000	0.482587	
mm_49047.1	chr6	4902963	4903163	+	1	NA	NA	NA	-257	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.085000	0.706468	
mm_138192.1	chr17	34269159	34269359	+	1	NA	NA	NA	6032	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.020000	0.532338	
mm_5908.1	chr1	55001009	55001209	-	1	NA	NA	NA	26369	NM_031179	81898	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	0.010000	0.283582	
mm_38274.1	chr4	136886033	136886233	-	1	NA	NA	NA	44	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.010000	0.582090	
mm_19249.1	chr2	84773162	84773362	-	1	NA	NA	NA	2167	NM_009776	12258	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.015000	0.542289	
mm_151832.1	chr19	5688465	5688665	-	1	NA	NA	NA	343	NM_144868	104401	Mm.329650	NM_144868	ENSMUSG00000054874	Pcnx3	Pcnxl3|mKIAA4073	pecanex homolog 3	protein-coding	0.085000	0.666667	
mm_61613.1	chr7	80082221	80082421	+	1	NA	NA	NA	-7064	NR_045695	100859962	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.045000	0.626866	
mm_42212.1	chr5	112793235	112793435	+	1	NA	NA	NA	43	NR_040676	67360	Mm.59218	NR_040675	ENSMUSG00000098230	1700095B10Rik	-	RIKEN cDNA 1700095B10 gene	ncRNA	0.020000	0.507463	
mm_134653.1	chr16	21995444	21995644	-	1	NA	NA	NA	-2	NM_001289581	239759	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	0.035000	0.517413	
mm_69795.1	chr7	141167790	141167990	-	1	NA	NA	NA	796	NM_001172101	107702	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.010000	0.522388	
mm_153578.1	chr19	43388244	43388444	-	1	NA	NA	NA	11	NM_001081257	545291	Mm.442200	NM_001081257	ENSMUSG00000074852	Hpse2	Gm968|Hpa2	heparanase 2	protein-coding	0.030000	0.557214	
mm_20056.1	chr2	120314057	120314257	-	1	NA	NA	NA	8	NM_001024145	271844	Mm.24880	NM_001024145	ENSMUSG00000046971	Pla2g4f	4732472I07Rik|Gm647|Pla2zeta	phospholipase A2, group IVF	protein-coding	0.010000	0.587065	
mm_3083.1	chr1	134405680	134405880	+	1	NA	NA	NA	-210	NM_028057	72017	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	0.030000	0.507463	
mm_76359.1	chr8	84772243	84772443	-	1	NA	NA	NA	2026	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.065000	0.616915	
mm_163441.1	chr12	85476644	85476844	-	1	NA	NA	NA	2843	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.005000	0.407960	
mm_169154.1	chr13	63240055	63240255	+	1	NA	NA	NA	126	NR_110521	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.070000	0.631841	
mm_94674.1	chr11	17324978	17325178	+	1	NA	NA	NA	67390	NM_001330649	57316	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.010000	0.437811	-48(CTGTTTAAAGGG,-,0.00)
mm_162721.1	chr10	37135544	37135744	-	1	NA	NA	NA	3282	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.000000	0.373134	
mm_120737.1	chr14	73172801	73173001	+	1	NA	NA	NA	30116	NR_033185	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.005000	0.537313	
mm_65070.1	chr7	19001112	19001312	-	1	NA	NA	NA	-2853	NM_178757	272359	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0.040000	0.601990	
mm_162175.1	chrX	102119412	102119612	+	1	NA	NA	NA	47	NM_027181	69713	Mm.371635	NM_027181	ENSMUSG00000079480	Pin4	2410002I22Rik|EPVH|Par14	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	protein-coding	0.050000	0.572139	
mm_94207.1	chr11	3105075	3105275	+	1	NA	NA	NA	-18846	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.035000	0.507463	
mm_4935.1	chr1	191120942	191121142	+	1	NA	NA	NA	22628	NM_030060	381319	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.045000	0.482587	
mm_2187.1	chr1	89016041	89016241	+	1	NA	NA	NA	28	NR_040471	73475	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA	0.035000	0.507463	
mm_32630.1	chr4	114987183	114987383	+	1	NA	NA	NA	-55	NM_025647	66588	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	0.100000	0.681592	
mm_25105.1	chr3	101297430	101297630	+	1	NA	NA	NA	-9591	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.015000	0.552239	
mm_48367.1	chr5	139473060	139473260	-	1	NA	NA	NA	11331	NM_133349	100494	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.010000	0.527363	
mm_11464.1	chr2	32278716	32278916	+	1	NA	NA	NA	9253	NR_110965	72931	Mm.27344	NM_175190	ENSMUSG00000044627	Swi5	1500019F05Rik|2900010J23Rik|AI046671	SWI5 recombination repair homolog (yeast)	protein-coding	0.010000	0.442786	
mm_142694.1	chr17	47833168	47833368	-	1	NA	NA	NA	23	NM_001276391	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.085000	0.721393	
mm_89574.1	chr10	95523088	95523288	+	1	NA	NA	NA	8026	NM_080560	93765	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.005000	0.373134	
mm_92169.1	chr10	67571841	67572041	-	1	NA	NA	NA	-22986	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.005000	0.472637	
mm_151260.1	chr19	53950313	53950513	+	1	NA	NA	NA	5537	NM_019658	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.005000	0.407960	
mm_131718.1	chr16	21423080	21423280	+	1	NA	NA	NA	62	NM_001285894	209018	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.140000	0.741294	
mm_16997.1	chr2	18390747	18390947	-	1	NA	NA	NA	1983	NM_001190817	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.000000	0.363184	
mm_73517.1	chr8	107454047	107454247	+	1	NA	NA	NA	17749	NM_025830	66894	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.000000	0.457711	
mm_69030.1	chr7	126797392	126797592	-	1	NA	NA	NA	1686	NM_001177307	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.040000	0.587065	
mm_44983.1	chr5	37336785	37336985	-	1	NA	NA	NA	-4	NM_021292	59056	Mm.479678	NM_021292	ENSMUSG00000029122	Evc	-	Ellis van Creveld gene syndrome	protein-coding	0.090000	0.701493	
mm_34409.1	chr4	145245617	145245817	+	1	NA	NA	NA	1153	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.005000	0.562189	
mm_18939.1	chr2	76755861	76756061	-	1	NA	NA	NA	80646	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.020000	0.452736	-46(CCCCATAAAAGG,-,0.00)
mm_78942.1	chr9	45138297	45138497	+	1	NA	NA	NA	-645	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.125000	0.691542	-97(CAGCCTAAAAGC,-,0.00)
mm_25632.1	chr3	119782770	119782970	+	1	NA	NA	NA	518	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.165000	0.825871	
mm_115782.1	chr13	19311459	19311659	-	1	NA	NA	NA	84254	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.343284	
mm_82583.1	chr9	21168249	21168449	-	1	NA	NA	NA	2635	NM_183408	18577	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.035000	0.567164	
mm_125179.1	chr15	31602019	31602219	+	1	NA	NA	NA	3	NM_026546	68073	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.095000	0.567164	
mm_144709.1	chr18	34932070	34932270	+	1	NA	NA	NA	-167	NM_144866	225363	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.065000	0.646766	
mm_102243.1	chr11	55033330	55033530	-	1	NA	NA	NA	41	NR_138556	11749	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0.110000	0.706468	
mm_64660.1	chr7	4164568	4164768	-	1	NA	NA	NA	31	NM_021454	58804	Mm.34268	NM_021454	ENSMUSG00000063838	Cdc42ep5	1700027J19Rik|2010007O02Rik|Borg3|C85526|CEP5	CDC42 effector protein (Rho GTPase binding) 5	protein-coding	0.020000	0.547264	56(ACTTTTAGGGAC,+,0.00)
mm_19224.1	chr2	84670495	84670695	-	1	NA	NA	NA	113	NM_001033166	72657	Mm.259293	NM_001033166	ENSMUSG00000076437	Selenoh	2700094K13Rik|Selh	selenoprotein H	protein-coding	0.100000	0.611940	
mm_154847.1	chrX	20425653	20425853	+	1	NA	NA	NA	65	NM_001289684	382207	Mm.281517	NM_199317	ENSMUSG00000037315	Jade3	5730598B06|AI851988|AW544806|Phf16|mKIAA0215	jade family PHD finger 3	protein-coding	0.090000	0.701493	
mm_159910.1	chr6	48047843	48048043	-	1	NA	NA	NA	-149	NM_001347139	72306	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	0.170000	0.835821	
mm_80610.1	chr9	87144201	87144401	+	1	NA	NA	NA	-5	NM_001177731	244958	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	0.120000	0.696517	
mm_42534.1	chr5	115866386	115866586	+	1	NA	NA	NA	20830	NM_007708	12704	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0.030000	0.517413	-33(GAGTTTAAAAGG,-,0.00),-31(GTTTAAAAGGCC,+,0.00)
mm_78828.1	chr9	44107595	44107795	+	1	NA	NA	NA	386	NM_001190319	235312	Mm.227110	NM_145613	ENSMUSG00000079592	C1qtnf5	Ctrp5	C1q and tumor necrosis factor related protein 5	protein-coding	0.020000	0.592040	
mm_42558.1	chr5	117126193	117126393	+	1	NA	NA	NA	6164	NM_001199685	330177	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.025000	0.616915	
mm_52196.1	chr6	100450952	100451152	+	1	NA	NA	NA	-76348	NR_040525	73395	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0.020000	0.497512	
mm_69970.1	chr7	142376834	142377034	-	1	NA	NA	NA	-3188	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.010000	0.492537	
mm_147762.1	chr18	61375015	61375215	-	1	NA	NA	NA	25316	NM_133249	170826	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0.005000	0.383085	
mm_68379.1	chr7	109175021	109175221	-	1	NA	NA	NA	86	NM_001302205	109594	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0.195000	0.825871	
mm_28187.1	chr3	88071941	88072141	-	1	NA	NA	NA	6263	NM_172526	214191	Mm.229191	NM_172526	ENSMUSG00000051036	Ttc24	A430025D11Rik	tetratricopeptide repeat domain 24	protein-coding	0.010000	0.532338	21(CCCTAAATGGCC,+,0.00)
mm_86902.1	chr10	22306682	22306882	+	1	NA	NA	NA	62	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.010000	0.537313	61(GACTCTAAAGGC,-,0.00)
mm_113102.1	chr13	24395168	24395368	+	1	NA	NA	NA	-19854	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.000000	0.417910	
mm_39784.1	chr5	30166002	30166202	+	1	NA	NA	NA	-4637	NR_035486	100316709		NR_035486	ENSMUSG00000088113	Mir1960	mir-1960|mmu-mir-1960	microRNA 1960	ncRNA	0.000000	0.338308	
mm_21292.1	chr2	156991970	156992170	-	1	NA	NA	NA	41	NM_013865	29812	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0.095000	0.661692	
mm_10390.1	chr2	13271505	13271705	+	1	NA	NA	NA	-190	NM_009105	20163	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.025000	0.492537	
mm_113210.1	chr13	25074652	25074852	+	1	NA	NA	NA	18748	NM_177577	195208	Mm.284719	NM_177577	ENSMUSG00000035910	Dcdc2a	AW492955|Dcdc2|RU2	doublecortin domain containing 2a	protein-coding	0.000000	0.462687	
mm_55948.1	chr6	85137703	85137903	-	1	NA	NA	NA	-39	NM_011467	20751	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|ENSMUSG00000071345|Gm10328	sepiapterin reductase	protein-coding	0.065000	0.621891	
mm_26067.1	chr3	135886983	135887183	+	1	NA	NA	NA	-46814	NR_040540	71038	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	0.005000	0.273632	71(TTCCTTAAAAGG,-,0.00),73(CCTTAAAAGGTT,+,0.00)
mm_83847.1	chr9	54501505	54501705	-	1	NA	NA	NA	21	NM_172771	235380	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.170000	0.791045	
mm_87510.1	chr10	52417607	52417807	+	1	NA	NA	NA	160	NM_030250	52014	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.130000	0.756219	
mm_162490.1	chr1	135847908	135848108	-	1	NA	NA	NA	7147	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.035000	0.552239	
mm_151046.1	chr19	47024633	47024833	+	1	NA	NA	NA	-9544	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.015000	0.427861	
mm_68185.1	chr7	104143182	104143382	-	1	NA	NA	NA	-10	NM_198623	244178	Mm.334092	NM_198623	ENSMUSG00000051618	Ubqln3	4933400K24Rik	ubiquilin 3	protein-coding	0.010000	0.547264	
mm_66918.1	chr7	60047879	60048079	-	1	NA	NA	NA	-42823	NM_033174	84704	Mm.274995	NM_033174	ENSMUSG00000000948	Snurf	2410045I01Rik|Snrpn	SNRPN upstream reading frame	protein-coding	0.015000	0.537313	
mm_166619.1	chr6	72355679	72355879	+	1	NA	NA	NA	296	NM_144916	232086	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	0.085000	0.671642	
mm_42969.1	chr5	123138583	123138783	+	1	NA	NA	NA	-3510	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.055000	0.661692	
mm_24354.1	chr3	90051533	90051733	+	1	NA	NA	NA	-3	NM_001287087	99650	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	0.025000	0.472637	
mm_23167.1	chr3	40745223	40745423	+	1	NA	NA	NA	-290	NM_011020	18415	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0.140000	0.786070	
mm_33061.1	chr4	123201416	123201616	+	1	NA	NA	NA	-37	NM_001085502	230718	Mm.354635	NM_001085502	ENSMUSG00000054958	Nt5c1a	Cn1a|Gm49	5'-nucleotidase, cytosolic IA	protein-coding	0.105000	0.741294	
mm_76800.1	chr8	104239526	104239726	-	1	NA	NA	NA	8932	NR_045642	57813	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.025000	0.502488	
mm_33743.1	chr4	134127837	134128037	+	1	NA	NA	NA	816	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.020000	0.577114	
mm_78357.1	chr9	25515170	25515370	+	1	NA	NA	NA	33673	NM_026189	67484	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.005000	0.303483	
mm_87426.1	chr10	50792176	50792376	+	1	NA	NA	NA	-103375	NM_011376	20464	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded homolog 1 (Drosophila)	protein-coding	0.005000	0.432836	-48(CTCTTTAAAGAA,+,0.00)
mm_65327.1	chr7	24972571	24972771	-	1	NA	NA	NA	57	NM_010261	14470	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.055000	0.601990	
mm_33746.1	chr4	134244028	134244228	+	1	NA	NA	NA	365	NR_040436	77490	Mm.426238	NR_040435	ENSMUSG00000086322	E130218I03Rik	E130106C14Rik	RIKEN cDNA E130218I03 gene	ncRNA	0.030000	0.582090	
mm_80283.1	chr9	73044749	73044949	+	1	NA	NA	NA	39	NM_001301230	11891	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	0.080000	0.651741	
mm_39690.1	chr5	26904596	26904796	+	1	NA	NA	NA	-82	NM_001198886	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.040000	0.562189	
mm_21144.1	chr2	154354162	154354362	-	1	NA	NA	NA	18457	NM_025876	66971	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	0.045000	0.507463	
mm_48364.1	chr5	139460395	139460595	-	1	NA	NA	NA	39	NM_028469	73212	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.090000	0.686567	
mm_28261.1	chr3	88571794	88571994	-	1	NA	NA	NA	-7777	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.005000	0.517413	
mm_139882.1	chr17	70755948	70756148	+	1	NA	NA	NA	90729	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.020000	0.592040	
mm_115584.1	chr13	11789987	11790187	-	1	NA	NA	NA	268035	NR_027813	664793	Mm.410565	NR_027813		Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo	0.000000	0.308458	21(CTTTTTAAAAGC,+,0.00),21(CTTTTTAAAAGC,-,0.00),22(TTTTTAAAAGCC,+,0.00)
mm_99241.1	chr11	101078318	101078518	+	1	NA	NA	NA	7	NM_010475	15485	Mm.188939	NM_010475	ENSMUSG00000019301	Hsd17b1	17HSDB1|17beta-HSD|E2DH|Hsd17ba	hydroxysteroid (17-beta) dehydrogenase 1	protein-coding	0.030000	0.547264	
mm_68804.1	chr7	125491381	125491581	-	1	NA	NA	NA	61	NM_026330	67711	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.090000	0.631841	
mm_79427.1	chr9	55541100	55541300	+	1	NA	NA	NA	51	NM_027397	104360	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0.085000	0.626866	
mm_124436.1	chr14	118594786	118594986	-	1	NA	NA	NA	-2414	NR_105815	102465208		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0.030000	0.452736	
mm_54354.1	chr6	31087535	31087735	-	1	NA	NA	NA	-24542	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.015000	0.502488	
mm_112480.1	chr13	5868954	5869154	+	1	NA	NA	NA	7565	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.000000	0.273632	
mm_44683.1	chr5	30119702	30119902	-	1	NA	NA	NA	-13716	NM_001256263	433868	Mm.450696	NM_001256263	ENSMUSG00000086815	3110082J24Rik	ENSMUSG00000073106	RIKEN cDNA 3110082J24 gene	protein-coding	0.020000	0.547264	
mm_58395.1	chr7	3210688	3210888	+	1	NA	NA	NA	-7838	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.015000	0.497512	
mm_51730.1	chr6	87022903	87023103	+	1	NA	NA	NA	13167	NM_020045	56748	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	0.000000	0.402985	41(GCTTTTATGTCA,+,0.00)
mm_19057.1	chr2	77280707	77280907	-	1	NA	NA	NA	-215	NM_175465	228071	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.145000	0.786070	
mm_54931.1	chr6	48396654	48396854	-	1	NA	NA	NA	1168	NM_001347153	77827	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	0.005000	0.467662	
mm_3145.1	chr1	135144595	135144795	+	1	NA	NA	NA	-2139	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.030000	0.512438	
mm_73292.1	chr8	104961650	104961850	+	1	NA	NA	NA	32	NM_197999	72361	Mm.26580	NM_197999	ENSMUSG00000031877	Ces2g	2210023G05Rik|Ces2l	carboxylesterase 2G	protein-coding	0.015000	0.507463	
mm_38834.1	chr4	149153865	149154065	-	1	NA	NA	NA	12742	NM_001081274	110208	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.015000	0.542289	
mm_16785.1	chr2	9951723	9951923	-	1	NA	NA	NA	-62283	NR_040511	77682	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA	0.010000	0.467662	
mm_146001.1	chr18	68398833	68399033	+	1	NA	NA	NA	28907	NM_001271717	17200	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	0.010000	0.393035	
mm_135537.1	chr16	49770727	49770927	-	1	NA	NA	NA	71533	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.015000	0.472637	
mm_118092.1	chr13	103845455	103845655	-	1	NA	NA	NA	75031	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.005000	0.393035	
mm_141346.1	chr17	28558789	28558989	-	1	NA	NA	NA	-388	NR_105935	102465585		NR_105935	ENSMUSG00000099152	Mir6969	Gm27305|mmu-mir-6969	microRNA 6969	ncRNA	0.010000	0.557214	
mm_123407.1	chr14	63543861	63544061	-	1	NA	NA	NA	-8	NM_177594	210376	Mm.441613	NM_177594	ENSMUSG00000035078	Mtmr9	9430075G12Rik|AA516943|AF073881|LIP-STYX|MTMR8|mMTMH3	myotubularin related protein 9	protein-coding	0.095000	0.651741	
mm_106739.1	chr12	3905253	3905453	+	1	NA	NA	NA	13609	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.020000	0.393035	
mm_46114.1	chr5	92363157	92363357	-	1	NA	NA	NA	20	NM_019494	56066	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0.010000	0.552239	-65(GTCTATAAATGC,-,0.00)
mm_54995.1	chr6	48770789	48770989	-	1	NA	NA	NA	-38	NM_031247	83408	Mm.333050	NM_031247	ENSMUSG00000039264	Gimap3	2010110D23Rik|Gimap5|Ian4	GTPase, IMAP family member 3	protein-coding	0.010000	0.482587	
mm_4070.1	chr1	166130423	166130623	+	1	NA	NA	NA	63	NM_021610	59290	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197	glycoprotein A33 (transmembrane)	protein-coding	0.010000	0.592040	
mm_155685.1	chrX	93700997	93701197	+	1	NA	NA	NA	25985	NM_211138	236899	Mm.166467	NM_177546	ENSMUSG00000035246	Pcyt1b	AW045697|CTTbeta	phosphate cytidylyltransferase 1, choline, beta isoform	protein-coding	0.020000	0.567164	11(GCTTTTAGGCTC,+,0.00)
mm_140313.1	chr17	86168332	86168532	+	1	NA	NA	NA	647	NM_011104	18754	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0.075000	0.646766	
mm_166015.1	chr4	121055219	121055419	-	1	NA	NA	NA	15753	NM_007741	12840	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	0.000000	0.502488	
mm_78515.1	chr9	32926310	32926510	+	1	NA	NA	NA	2556	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.015000	0.442786	
mm_76371.1	chr8	84800261	84800461	-	1	NA	NA	NA	-23	NM_001081982	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.185000	0.791045	
mm_97371.1	chr11	77686039	77686239	+	1	NA	NA	NA	0	NM_001024205	68564	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0.090000	0.641791	
mm_770.1	chr1	44147804	44148004	+	1	NA	NA	NA	160	NM_011729	22592	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	0.090000	0.646766	
mm_1092.1	chr1	59689446	59689646	+	1	NA	NA	NA	-2412	NR_028554	100217459		NR_028554		Snord70	MBII-234|snoRNA234	small nucleolar RNA, C/D box 70	snoRNA	0.005000	0.447761	
mm_67314.1	chr7	79504659	79504859	-	1	NA	NA	NA	-505	NR_029818	723968		NR_029818	ENSMUSG00000093238	Mir9-3	Mirn9-3|mir-9-3|mmu-mir-9-3	microRNA 9-3	ncRNA	0.060000	0.636816	
mm_93787.1	chr10	120624204	120624404	-	1	NA	NA	NA	-141428	NR_038000	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.015000	0.477612	
mm_39945.1	chr5	31876579	31876779	+	1	NA	NA	NA	178629	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.005000	0.437811	-41(GTCTTTAAGAGC,-,0.00),-40(TCTTTAAGAGCA,+,0.00)
mm_158503.1	chrX	142390406	142390606	-	1	NA	NA	NA	29	NM_001033600	50790	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	0.130000	0.726368	
mm_137100.1	chr17	21567322	21567522	+	1	NA	NA	NA	376	NM_001002008	381066	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	0.015000	0.313433	
mm_75105.1	chr8	34146642	34146842	-	1	NA	NA	NA	-3	NM_026609	68192	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	0.155000	0.796020	
mm_39424.1	chr5	16008711	16008911	+	1	NA	NA	NA	74120	NM_001110844	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.010000	0.368159	
mm_108556.1	chr12	84569728	84569928	+	1	NA	NA	NA	0	NM_007701	12677	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	0.045000	0.631841	
mm_40817.1	chr5	72259404	72259604	+	1	NA	NA	NA	56161	NM_153389	231287	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.015000	0.477612	
mm_2502.1	chr1	106178441	106178641	+	1	NA	NA	NA	6672	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.005000	0.477612	
mm_154203.1	chr19	59041827	59042027	-	1	NA	NA	NA	34142	NM_175172	71653	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Kiaa1598|Shootin1|mKIAA1598	shootin 1	protein-coding	0.015000	0.472637	
mm_119639.1	chr14	51907972	51908172	+	1	NA	NA	NA	5416	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.015000	0.492537	
mm_108913.1	chr12	100206639	100206839	+	1	NA	NA	NA	6595	NM_001313934	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.005000	0.358209	-75(TACCTTATAAGG,-,0.00),-73(CCTTATAAGGAA,+,0.00)
mm_26485.1	chr3	144947697	144947897	+	1	NA	NA	NA	-15268	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding	0.030000	0.547264	-6(CCCCTTATAAGC,-,0.00),-4(CCTTATAAGCAC,+,0.00)
mm_161434.1	chr15	59040308	59040508	-	1	NA	NA	NA	41618	NM_001146180	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.015000	0.507463	
mm_78322.1	chr9	24583889	24584089	+	1	NA	NA	NA	-41196	NM_173412	235067	Mm.437189	NM_173412	ENSMUSG00000047995	Cypt4	1700009B20Rik|Ckt1r2	cysteine-rich perinuclear theca 4	protein-coding	0.000000	0.243781	
mm_21289.1	chr2	156991721	156991921	-	1	NA	NA	NA	290	NM_013865	29812	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0.115000	0.721393	
mm_170480.1	chr19	12273278	12273478	+	1	NA	NA	NA	5146	NM_146686	258681	Mm.271522	NM_146686	ENSMUSG00000060049	Olfr235	MOR214-3|Olfr232|Olfr232-ps1|Olfr235-ps1|Olfr245|Olfr245-ps1	olfactory receptor 235	protein-coding	0.030000	0.487562	
mm_110930.1	chr12	76369648	76369848	-	1	NA	NA	NA	-188	NM_028356	109929	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0.115000	0.656716	
mm_94961.1	chr11	30771738	30771938	+	1	NA	NA	NA	63	NM_134013	103554	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	0.155000	0.805970	
mm_108086.1	chr12	74093121	74093321	+	1	NA	NA	NA	95460	NM_172804	238266	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding	0.020000	0.477612	
mm_133922.1	chr16	97745703	97745903	+	1	NA	NA	NA	17952	NM_023663	72388	Mm.35290	NM_023663	ENSMUSG00000005251	Ripk4	2310069J12Rik|AI552420|ANKK2|Ankrd3|DIk|PKK|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding	0.020000	0.497512	
mm_44154.1	chr5	150457641	150457841	+	1	NA	NA	NA	44478	NR_024513	194292	Mm.300184	NR_024513		Gm5	Gm1812	predicted gene 5	ncRNA	0.040000	0.542289	
mm_140658.1	chr17	12769615	12769815	-	1	NA	NA	NA	-9	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.115000	0.706468	
mm_44882.1	chr5	34637110	34637310	-	1	NA	NA	NA	-96	NM_026660	68294	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	0.045000	0.611940	
mm_106978.1	chr12	9574366	9574566	+	1	NA	NA	NA	24	NM_011859	23967	Mm.45055	NM_011859	ENSMUSG00000048387	Osr1	Odd1|Osr	odd-skipped related 1 (Drosophila)	protein-coding	0.055000	0.626866	
mm_8311.1	chr1	144200466	144200666	-	1	NA	NA	NA	-23194	NM_153171	246709	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	0.005000	0.378109	
mm_95066.1	chr11	32535890	32536090	+	1	NA	NA	NA	2724	NM_009288	20868	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.005000	0.412935	
mm_82087.1	chr9	123044945	123045145	+	1	NA	NA	NA	10304	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.025000	0.497512	
mm_122583.1	chr14	50840424	50840624	-	1	NA	NA	NA	30030	NM_009351	21745	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	0.005000	0.412935	
mm_138637.1	chr17	35865715	35865915	+	1	NA	NA	NA	220	NM_001146711	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.070000	0.661692	
mm_45325.1	chr5	65492317	65492517	-	1	NA	NA	NA	418	NM_133697	68552	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.060000	0.587065	
mm_37242.1	chr4	118138915	118139115	-	1	NA	NA	NA	-4069	NM_001161774	20441	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.010000	0.567164	
mm_46354.1	chr5	102978382	102978582	-	1	NA	NA	NA	79910	NM_001310686	26414	Mm.39253	NM_009158	ENSMUSG00000046709	Mapk10	C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding	0.005000	0.432836	
mm_139382.1	chr17	51882599	51882799	+	1	NA	NA	NA	-28	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.055000	0.512438	
mm_25754.1	chr3	123355470	123355670	+	1	NA	NA	NA	30420	NM_201638	210529	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	0.010000	0.402985	
mm_53706.1	chr6	143167186	143167386	+	1	NA	NA	NA	56	NM_029250	75320	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0.165000	0.786070	
mm_52747.1	chr6	120554689	120554889	+	1	NA	NA	NA	-7	NR_045733	73505	Mm.416867	NR_045733		1700072O05Rik	-	RIKEN cDNA 1700072O05 gene	ncRNA	0.020000	0.522388	
mm_22326.1	chr2	180642558	180642758	-	1	NA	NA	NA	33	NM_178254	277353	Mm.473700	NM_178254	ENSMUSG00000038932	Tcfl5	AV260129|Figlb|Sosf1	transcription factor-like 5 (basic helix-loop-helix)	protein-coding	0.205000	0.835821	
mm_113055.1	chr13	23695704	23695904	+	1	NA	NA	NA	-7	NM_010377	107970	Mm.8048	NM_010377	ENSMUSG00000036211	Hist1h1t	H1.6|H1ft|H1t	histone cluster 1, H1t	protein-coding	0.050000	0.611940	-39(CTCTATATAAGC,-,0.00)
mm_55022.1	chr6	48841293	48841493	-	1	NA	NA	NA	-19	NM_001164208	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.005000	0.592040	-22(GCCCCTTTAGGG,-,0.00),-20(CCCTTTAGGGGT,+,0.00)
mm_9954.1	chr1	191020299	191020499	-	1	NA	NA	NA	-4952	NR_027298	100125339	Mm.472263	NR_027298	ENSMUSG00000097845	A230020J21Rik	ENSMUSG00000066596	RIKEN cDNA A230020J21 gene	ncRNA	0.000000	0.378109	
mm_24097.1	chr3	88043041	88043241	+	1	NA	NA	NA	35	NM_025663	66614	Mm.46029	NM_025663	ENSMUSG00000028069	Gpatch4	2610029K21Rik|Gpatc4	G patch domain containing 4	protein-coding	0.045000	0.572139	
mm_22208.1	chr2	174047266	174047466	-	1	NA	NA	NA	-29685	NM_172675	228960	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.020000	0.427861	
mm_42574.1	chr5	117240398	117240598	+	1	NA	NA	NA	47066	NM_018858	23980	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	0.025000	0.477612	
mm_79799.1	chr9	64117161	64117361	+	1	NA	NA	NA	114	NM_145835	235435	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	0.005000	0.547264	
mm_172157.1	chr6	42966187	42966387	+	1	NA	NA	NA	10787	NM_146656	258650	Mm.377613	NM_146656	ENSMUSG00000073110	Olfr444	MOR261-2	olfactory receptor 444	protein-coding	0.000000	0.447761	
mm_141507.1	chr17	31637060	31637260	-	1	NA	NA	NA	45	NM_144855	12411	Mm.206417	NM_144855	ENSMUSG00000024039	Cbs	AI047524|AI303044|HIP4	cystathionine beta-synthase	protein-coding	0.090000	0.671642	
mm_129926.1	chr15	84446927	84447127	-	1	NA	NA	NA	70	NM_001163145	72301	Mm.275387	NM_001163145	ENSMUSG00000062760	1810041L15Rik	Kiaa1644	RIKEN cDNA 1810041L15 gene	protein-coding	0.030000	0.641791	
mm_145284.1	chr18	53210239	53210439	+	1	NA	NA	NA	33974	NM_026386	67804	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.030000	0.457711	
mm_163963.1	chr14	54966319	54966519	-	1	NA	NA	NA	188	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.015000	0.567164	
mm_10608.1	chr2	18998292	18998492	+	1	NA	NA	NA	73	NR_024323	74629	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0.125000	0.701493	
mm_32499.1	chr4	108459320	108459520	+	1	NA	NA	NA	-6	NM_175472	230594	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.125000	0.731343	
mm_25950.1	chr3	131638266	131638466	+	1	NA	NA	NA	72334	NM_001289477	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.025000	0.512438	
mm_19177.1	chr2	84387091	84387291	-	1	NA	NA	NA	38075	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.015000	0.348259	
mm_94480.1	chr11	6561080	6561280	+	1	NA	NA	NA	997	NM_001190344	216527	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0.015000	0.487562	-98(TTTTTTAGAGGG,+,0.00)
mm_132108.1	chr16	31450134	31450334	+	1	NA	NA	NA	21481	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.005000	0.507463	
mm_19761.1	chr2	105399162	105399362	-	1	NA	NA	NA	57	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0.120000	0.786070	
mm_163252.1	chr11	108936595	108936795	+	1	NA	NA	NA	16346	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.030000	0.532338	-55(CAGCTTAAATGG,-,0.00),-53(GCTTAAATGGCA,+,0.00)
mm_64076.1	chr7	140920824	140921024	+	1	NA	NA	NA	22	NM_133946	101613	Mm.386833	NM_133946	ENSMUSG00000038745	Nlrp6	AI504961|Avr|Nalp6|Navr|Navr/Avr|Non-AVR|Pypaf5	NLR family, pyrin domain containing 6	protein-coding	0.010000	0.457711	
mm_113297.1	chr13	30659980	30660180	+	1	NA	NA	NA	21	NM_134068	105352	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.165000	0.786070	
mm_55149.1	chr6	51466837	51467037	-	1	NA	NA	NA	2957	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.015000	0.422886	
mm_133202.1	chr16	73072276	73072476	+	1	NA	NA	NA	409227	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.010000	0.497512	
mm_166710.1	chr6	116650537	116650737	+	1	NA	NA	NA	-47	NM_145980	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.020000	0.532338	
mm_125373.1	chr15	39964034	39964234	+	1	NA	NA	NA	1485	NR_045719	105976	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0.015000	0.497512	
mm_157509.1	chrX	49273561	49273761	-	1	NA	NA	NA	14581	NM_001271449	209224	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	0.030000	0.532338	
mm_168150.1	chr10	39198589	39198789	+	1	NA	NA	NA	-34895	NM_001127376	327743	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|ENSMUSG00000062074|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0.020000	0.407960	
mm_150851.1	chr19	44992235	44992435	+	1	NA	NA	NA	2991	NM_011976	26456	Mm.34404	NM_011976	ENSMUSG00000025207	Sema4g	AI507908|AW554132	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	protein-coding	0.010000	0.547264	
mm_1086.1	chr1	59550934	59551134	+	1	NA	NA	NA	34770	NM_001013771	381260	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0.030000	0.472637	
mm_38047.1	chr4	133968020	133968220	-	1	NA	NA	NA	-129	NM_016957	15331	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	0.080000	0.646766	
mm_124053.1	chr14	77874772	77874972	-	1	NA	NA	NA	45	NM_025384	66148	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	0.105000	0.656716	
mm_32023.1	chr4	95093431	95093631	+	1	NA	NA	NA	-41309	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.010000	0.507463	
mm_11677.1	chr2	35444611	35444811	+	1	NA	NA	NA	16738	NM_001308299	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.015000	0.527363	
mm_23952.1	chr3	84905802	84906002	+	1	NA	NA	NA	41757	NM_001177774	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.005000	0.358209	-55(CTCTTTATAAGA,-,0.00)
mm_104731.1	chr11	98326888	98327088	-	1	NA	NA	NA	2657	NM_010895	18013	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0.070000	0.671642	
mm_171308.1	chr3	94178091	94178291	-	1	NA	NA	NA	2	NM_001146107	100043188	Mm.304029	NM_001146107	ENSMUSG00000074424	Gm10696	ENSMUSG00000074424	predicted gene 10696	protein-coding	0.005000	0.442786	-36(GCCTATATAAGC,-,0.00)
mm_36420.1	chr4	81348629	81348829	-	1	NA	NA	NA	94086	NM_010820	17475	Mm.153039	NM_010820	ENSMUSG00000028402	Mpdz	AI225843|B930003D11Rik|MUPP1	multiple PDZ domain protein	protein-coding	0.005000	0.447761	
mm_70794.1	chr8	22623921	22624121	+	1	NA	NA	NA	-22	NM_145592	234130	Mm.157322	NM_145592	ENSMUSG00000031535	Dkk4	Dkk-4	dickkopf WNT signaling pathway inhibitor 4	protein-coding	0.015000	0.512438	
mm_50997.1	chr6	63336636	63336836	+	1	NA	NA	NA	79879	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.005000	0.184080	
mm_125160.1	chr15	31225028	31225228	+	1	NA	NA	NA	743	NM_146057	223453	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.005000	0.517413	
mm_18375.1	chr2	59953646	59953846	-	1	NA	NA	NA	-71140	NM_028118	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.030000	0.363184	70(CCTTTTATCCGC,+,0.00)
mm_30741.1	chr4	14433745	14433945	+	1	NA	NA	NA	-142536	NR_131155	100040030	Mm.366499	NR_131155		Gm2560	-	predicted gene 2560	ncRNA	0.025000	0.492537	
mm_113576.1	chr13	40717042	40717242	+	1	NA	NA	NA	-10666	NR_125899	102633805		NR_125899	ENSMUSG00000097752	Gm26688	Tfap2a-as1	predicted gene, 26688	ncRNA	0.065000	0.641791	
mm_107287.1	chr12	29840129	29840329	+	1	NA	NA	NA	-97807	NM_181395	69675	Mm.251774	NM_181395	ENSMUSG00000020674	Pxdn	2310075M15Rik|C85409|E330004E07|VPO1|mKIAA0230	peroxidasin	protein-coding	0.055000	0.636816	
mm_68913.1	chr7	126459623	126459823	-	1	NA	NA	NA	3350	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.040000	0.522388	
mm_115290.1	chr13	111977875	111978075	+	1	NA	NA	NA	110039	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.070000	0.631841	
mm_164388.1	chr16	32487499	32487699	-	1	NA	NA	NA	280	NM_145932	106407	Mm.476915	NM_145932	ENSMUSG00000035699	Slc51a	AV001382|AW261577|D630035O19Rik|OSTalpha|Osta	solute carrier family 51, alpha subunit	protein-coding	0.030000	0.572139	
mm_66911.1	chr7	60003075	60003275	-	1	NA	NA	NA	1981	NM_013670	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding	0.025000	0.512438	
mm_59717.1	chr7	28767139	28767339	+	1	NA	NA	NA	487	NM_001122766	64383	Mm.272443	NM_022432	ENSMUSG00000015149	Sirt2	5730427M03Rik|SIR2L2|Sir2l	sirtuin 2	protein-coding	0.015000	0.482587	
mm_92094.1	chr10	62865355	62865555	-	1	NA	NA	NA	14559	NM_027384	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.025000	0.547264	
mm_90468.1	chr10	127801067	127801267	+	1	NA	NA	NA	14	NM_009040	19683	Mm.100276	NM_009040	ENSMUSG00000069456	Rdh16	CRAD|CRAD1|Rdh6	retinol dehydrogenase 16	protein-coding	0.015000	0.532338	
mm_95476.1	chr11	51059169	51059369	+	1	NA	NA	NA	12	NM_001347495	21408	Mm.4792	NM_009329	ENSMUSG00000020364	Zfp354a	AW488485|Tcf17|Znf354a|kid1	zinc finger protein 354A	protein-coding	0.075000	0.636816	
mm_64344.1	chr7	142380739	142380939	+	1	NA	NA	NA	7031	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.020000	0.502488	
mm_149515.1	chr19	12435105	12435305	+	1	NA	NA	NA	7300	NM_019540	56093	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.005000	0.427861	
mm_170466.1	chr18	9707494	9707694	+	1	NA	NA	NA	-54	NM_130449	140792	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.135000	0.781095	
mm_141053.1	chr17	25727295	25727495	-	1	NA	NA	NA	20	NM_145409	214901	Mm.102540	NM_145409	ENSMUSG00000019214	Chtf18	6030457M03Rik|CTF18|Chl12	CTF18, chromosome transmission fidelity factor 18	protein-coding	0.085000	0.631841	
mm_89275.1	chr10	87860993	87861193	+	1	NA	NA	NA	-18	NM_001111274	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.015000	0.492537	88(TTGTTTAAATGG,-,0.00)
mm_172070.1	chr6	136875661	136875861	-	1	NA	NA	NA	62	NM_008597	17313	Mm.243085	NM_008597	ENSMUSG00000030218	Mgp	Mglap	matrix Gla protein	protein-coding	0.025000	0.606965	-77(TCCTATAAAAAC,-,0.00)
mm_109088.1	chr12	104413991	104414191	+	1	NA	NA	NA	7383	NM_009252	20716	Mm.482074	NM_009252	ENSMUSG00000021091	Serpina3n	Spi2-2|Spi2.2|Spi2/eb.4	serine (or cysteine) peptidase inhibitor, clade A, member 3N	protein-coding	0.005000	0.572139	
mm_50860.1	chr6	55335988	55336188	+	1	NA	NA	NA	-211	NM_007472	11826	Mm.18625	NM_007472	ENSMUSG00000004655	Aqp1	CHIP28	aquaporin 1	protein-coding	0.015000	0.587065	84(GCCTATTAGAGC,-,0.00)
mm_102346.1	chr11	58139427	58139627	-	1	NA	NA	NA	29012	NM_172558	216766	Mm.275349	NM_172558	ENSMUSG00000037275	Gemin5	AA407055|AA407208|AI451603|BB194447|C330013N08	gem (nuclear organelle) associated protein 5	protein-coding	0.005000	0.432836	
mm_155699.1	chrX	94635976	94636176	+	1	NA	NA	NA	7	NM_008179	14853	Mm.20826	NM_008179	ENSMUSG00000071723	Gspt2	-	G1 to S phase transition 2	protein-coding	0.085000	0.631841	
mm_81695.1	chr9	111182228	111182428	+	1	NA	NA	NA	64217	NM_001164838	71268	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.015000	0.472637	18(GCCCTGTAAAGG,-,0.00)
mm_57536.1	chr6	126641623	126641823	-	1	NA	NA	NA	4078	NM_010595	16485	Mm.40424	NM_010595	ENSMUSG00000047976	Kcna1	AI840627|Kca1-1|Kv1.1|MBK1|Mk-1|Shak|mceph	potassium voltage-gated channel, shaker-related subfamily, member 1	protein-coding	0.015000	0.358209	
mm_158447.1	chrX	140542975	140543175	-	1	NA	NA	NA	112	NM_010286	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.025000	0.577114	
mm_65887.1	chr7	29906446	29906646	-	1	NA	NA	NA	-14	NM_001285798	22689	Mm.86747	NM_011754	ENSMUSG00000062040	Zfp27	Zfp-27|mkr-4|mszf76	zinc finger protein 27	protein-coding	0.010000	0.452736	
mm_120136.1	chr14	60277056	60277256	+	1	NA	NA	NA	11951	NM_144843	219135	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	0.015000	0.353234	
mm_147809.1	chr18	61707521	61707721	-	1	NA	NA	NA	14	NM_172832	240334	Mm.234457	NM_172832	ENSMUSG00000024579	Pcyox1l	BC060677|C630049M13	prenylcysteine oxidase 1 like	protein-coding	0.105000	0.716418	
mm_87156.1	chr10	36506919	36507119	+	1	NA	NA	NA	212	NM_001253356	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0.110000	0.696517	
mm_117312.1	chr13	67526058	67526258	-	1	NA	NA	NA	73	NM_133228	170763	Mm.491205	NM_133228	ENSMUSG00000097333	Zfp87	2210039O17Rik|4631412O18Rik|KRAB4|Mzf22|Zfp72	zinc finger protein 87	protein-coding	0.065000	0.582090	
mm_121173.1	chr14	103033658	103033858	+	1	NA	NA	NA	45	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.015000	0.507463	
mm_106146.1	chr11	116549289	116549489	-	1	NA	NA	NA	14649	NM_011451	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.000000	0.527363	
mm_12147.1	chr2	61804797	61804997	+	1	NA	NA	NA	444	NM_009322	21375	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.025000	0.472637	
mm_63070.1	chr7	122159362	122159562	+	1	NA	NA	NA	27	NM_011121	18817	Mm.16525	NM_011121	ENSMUSG00000030867	Plk1	Plk|STPK13	polo-like kinase 1	protein-coding	0.095000	0.616915	
mm_96431.1	chr11	67292838	67293038	+	1	NA	NA	NA	15814	NM_177369	17885	Mm.340163	NM_177369	ENSMUSG00000055775	Myh8	4832426G23Rik|AI327267|MHCp|MyHC-pn|Myhs-p|Myhsp	myosin, heavy polypeptide 8, skeletal muscle, perinatal	protein-coding	0.010000	0.497512	
mm_132287.1	chr16	33179035	33179235	+	1	NA	NA	NA	-5936	NM_176840	106326	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.035000	0.487562	
mm_158047.1	chrX	99030485	99030685	-	1	NA	NA	NA	-11996	NM_199018	236920	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	0.020000	0.542289	
mm_76511.1	chr8	86887988	86888188	-	1	NA	NA	NA	-2830	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.015000	0.527363	
mm_142119.1	chr17	35866854	35867054	-	1	NA	NA	NA	339	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.025000	0.547264	
mm_79841.1	chr9	64811225	64811425	+	1	NA	NA	NA	314	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.095000	0.681592	
mm_55231.1	chr6	52240576	52240776	-	1	NA	NA	NA	178	NM_001122950	15395	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0.045000	0.522388	73(CCTTTTCTGGGC,+,0.00)
mm_102325.1	chr11	57657722	57657922	-	1	NA	NA	NA	12380	NM_134189	171212	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	0.015000	0.552239	
mm_149841.1	chr19	25027897	25028097	+	1	NA	NA	NA	28468	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.000000	0.537313	
mm_6017.1	chr1	59042467	59042667	-	1	NA	NA	NA	52333	NM_175200	73463	Mm.252811	NM_175200	ENSMUSG00000072295	Als2cr11	1700052H20Rik|4930408G06Rik	amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 (human)	protein-coding	0.000000	0.308458	47(CCTTTTAAACTG,+,0.00)
mm_156378.1	chrX	139671941	139672141	+	1	NA	NA	NA	-12955	NM_001081499	245638	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	0.020000	0.353234	
mm_161954.1	chr19	6245406	6245606	+	1	NA	NA	NA	3838	NM_194348	329015	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0.025000	0.646766	
mm_125593.1	chr15	59648420	59648620	+	1	NA	NA	NA	-134	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.065000	0.646766	
mm_24190.1	chr3	88607376	88607576	+	1	NA	NA	NA	-8731	NM_001198911	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.035000	0.527363	
mm_6081.1	chr1	62798515	62798715	-	1	NA	NA	NA	-3883	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.010000	0.447761	4(CCTTTTAGATAA,+,0.00)
mm_60526.1	chr7	44480023	44480223	+	1	NA	NA	NA	-4394	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.447761	
mm_88874.1	chr10	81070141	81070341	+	1	NA	NA	NA	158	NM_022653	50492	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	0.090000	0.686567	
mm_169607.1	chr15	36793471	36793671	-	1	NA	NA	NA	967	NM_011740	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.100000	0.691542	
mm_148986.1	chr19	8593960	8594160	+	1	NA	NA	NA	878	NM_001164635	19879	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	0.040000	0.606965	
mm_8695.1	chr1	157412180	157412380	-	1	NA	NA	NA	-72	NR_027984	69953	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	0.145000	0.810945	
mm_21464.1	chr2	160912218	160912418	-	1	NA	NA	NA	21	NM_001291145	280635	Mm.330747	NM_182840	ENSMUSG00000050700	Emilin3	1110013O17Rik|EMILIN-3|EMILIN-5|EMILIN-T|Emilin5	elastin microfibril interfacer 3	protein-coding	0.155000	0.776119	
mm_3487.1	chr1	150105710	150105910	+	1	NA	NA	NA	5779	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.298507	
mm_152912.1	chr19	27262223	27262423	-	1	NA	NA	NA	45303	NM_001161420	22359	Mm.4141	NM_013703	ENSMUSG00000024924	Vldlr	AA408956|AI451093|AW047288	very low density lipoprotein receptor	protein-coding	0.010000	0.517413	
mm_122986.1	chr14	54984709	54984909	-	1	NA	NA	NA	-9033	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.015000	0.507463	
mm_111871.1	chr12	108003107	108003307	-	1	NA	NA	NA	207	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.085000	0.646766	
mm_58423.1	chr7	3293060	3293260	+	1	NA	NA	NA	132	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.040000	0.606965	
mm_166751.1	chr6	125337764	125337964	+	1	NA	NA	NA	-11859	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.010000	0.497512	
mm_52251.1	chr6	106791701	106791901	+	1	NA	NA	NA	8286	NM_021449	58799	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.015000	0.338308	-34(GGTTATAAAAGC,-,0.00)
mm_26111.1	chr3	137623679	137623879	+	1	NA	NA	NA	107	NM_030143	73284	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	0.085000	0.671642	
mm_4522.1	chr1	175631951	175632151	+	1	NA	NA	NA	-142	NM_133809	98256	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	0.020000	0.432836	-87(TGCTATTTAAAC,-,0.00)
mm_38526.1	chr4	141445335	141445535	-	1	NA	NA	NA	762	NM_009541	22642	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0.035000	0.502488	
mm_123404.1	chr14	63543616	63543816	-	1	NA	NA	NA	237	NM_177594	210376	Mm.441613	NM_177594	ENSMUSG00000035078	Mtmr9	9430075G12Rik|AA516943|AF073881|LIP-STYX|MTMR8|mMTMH3	myotubularin related protein 9	protein-coding	0.105000	0.731343	
mm_171007.1	chr2	81990241	81990441	+	1	NA	NA	NA	-63317	NM_175513	241514	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding	0.030000	0.601990	
mm_48223.1	chr5	137644608	137644808	-	1	NA	NA	NA	1006	NM_010571	16369	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	0.035000	0.631841	
mm_125426.1	chr15	43184331	43184531	+	1	NA	NA	NA	-13613	NM_172815	239405	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.010000	0.368159	62(GTCTATTAATAG,-,0.00)
mm_166865.1	chr7	24530839	24531039	+	1	NA	NA	NA	291	NM_153134	210146	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	0.030000	0.477612	
mm_147778.1	chr18	61536477	61536677	-	1	NA	NA	NA	-41	NM_177828	328967	Mm.488098	NM_177828	ENSMUSG00000045094	Arhgef37	4933429F08Rik	Rho guanine nucleotide exchange factor (GEF) 37	protein-coding	0.095000	0.686567	
mm_122749.1	chr14	54176560	54176760	-	1	NA	NA	NA	77269	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.050000	0.502488	
mm_57141.1	chr6	122609926	122610126	-	1	NA	NA	NA	61	NM_008108	14562	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0.025000	0.547264	
mm_90830.1	chr10	7956370	7956570	-	1	NA	NA	NA	-347	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.160000	0.791045	
mm_151916.1	chr19	5799668	5799868	-	1	NA	NA	NA	2904	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.020000	0.462687	
mm_19334.1	chr2	90580221	90580421	-	1	NA	NA	NA	326	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.165000	0.791045	
mm_167110.1	chr7	114152170	114152370	+	1	NA	NA	NA	-34489	NM_025846	66922	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.010000	0.477612	
mm_119883.1	chr14	54894503	54894703	+	1	NA	NA	NA	460	NM_019402	54196	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	0.070000	0.636816	
mm_35756.1	chr4	45816215	45816415	-	1	NA	NA	NA	10512	NM_018741	75426	Mm.3919	NM_018741	ENSMUSG00000035551	Igfbpl1	2810011G06Rik|2810453O06Rik|IGFBPL	insulin-like growth factor binding protein-like 1	protein-coding	0.015000	0.502488	
mm_94481.1	chr11	6564255	6564455	+	1	NA	NA	NA	4172	NM_001190344	216527	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0.010000	0.482587	
mm_70175.1	chr7	143649543	143649743	-	1	NA	NA	NA	21	NM_001311145	79202	Mm.261384	NM_023680	ENSMUSG00000010751	Tnfrsf22	2810028K06Rik|C130035G06Rik|SOBa|Tnfrh2|Tnfrsf1al2|mDcTrailr2	tumor necrosis factor receptor superfamily, member 22	protein-coding	0.050000	0.626866	
mm_116849.1	chr13	54759209	54759409	-	1	NA	NA	NA	7131	NM_033610	104069	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	0.045000	0.626866	
mm_67946.1	chr7	100467060	100467260	-	1	NA	NA	NA	-5831	NM_009464	22229	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.020000	0.572139	
mm_92073.1	chr10	62616315	62616515	-	1	NA	NA	NA	-14117	NM_019553	56200	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0.040000	0.522388	
mm_41549.1	chr5	92925324	92925524	+	1	NA	NA	NA	27431	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.030000	0.547264	
mm_129191.1	chr15	76350970	76351170	-	1	NA	NA	NA	40	NM_025340	106025	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	0.045000	0.552239	
mm_99037.1	chr11	98960512	98960712	+	1	NA	NA	NA	141	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.095000	0.711443	
mm_135549.1	chr16	49839737	49839937	-	1	NA	NA	NA	-15817	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.020000	0.497512	
mm_88986.1	chr10	81564574	81564774	+	1	NA	NA	NA	5230	NM_001276288	14797	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.020000	0.547264	
mm_36294.1	chr4	66159682	66159882	-	1	NA	NA	NA	244701	NM_019514	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding	0.005000	0.343284	
mm_45762.1	chr5	86906254	86906454	-	1	NA	NA	NA	583	NM_153598	100727	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding	0.010000	0.492537	
mm_163692.1	chr13	99434138	99434338	+	1	NA	NA	NA	-21412	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.010000	0.402985	
mm_158228.1	chrX	106219588	106219788	-	1	NA	NA	NA	154	NM_001001176	407786	Mm.19440	NM_001001176	ENSMUSG00000047242	Taf9b	BC066223|Taf9l	TATA-box binding protein associated factor 9B	protein-coding	0.065000	0.651741	
mm_29615.1	chr3	121282924	121283124	-	1	NA	NA	NA	-8793	NM_024178	66789	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0.005000	0.527363	-37(GGCCTTATAGAG,-,0.00),-35(CCTTATAGAGTC,+,0.00)
mm_62043.1	chr7	92236071	92236271	+	1	NA	NA	NA	1201	NM_001243047	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.020000	0.373134	
mm_52570.1	chr6	116337806	116338006	+	1	NA	NA	NA	-116	NM_001302385	71779	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	0.100000	0.661692	
mm_126490.1	chr15	81626340	81626540	+	1	NA	NA	NA	-37449	NM_001289712	214669	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	l(3)mbt-like 2 (Drosophila)	protein-coding	0.015000	0.452736	
mm_128595.1	chr15	58134907	58135107	-	1	NA	NA	NA	75	NM_027435	70472	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0.095000	0.686567	
mm_145446.1	chr18	60211902	60212102	+	1	NA	NA	NA	-75	NM_001033767	240327	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.000000	0.427861	-84(CCCTTTAGAGGA,+,0.00)
mm_134409.1	chr16	17673224	17673424	-	1	NA	NA	NA	26854	NM_001166164	72315	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.000000	0.547264	
mm_94292.1	chr11	4048527	4048727	+	1	NA	NA	NA	-16226	NM_001029937	380683	Mm.296806	NM_001029937	ENSMUSG00000054986	Sec14l3	1110069O07Rik	SEC14-like lipid binding 3	protein-coding	0.010000	0.522388	
mm_35198.1	chr4	16163518	16163718	-	1	NA	NA	NA	25	NM_138952	192656	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.090000	0.761194	
mm_3329.1	chr1	137931691	137931891	+	1	NA	NA	NA	-34664	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.015000	0.388060	
mm_8817.1	chr1	161985603	161985803	-	1	NA	NA	NA	-6067	NM_001204904	75368	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	0.010000	0.343284	
mm_147780.1	chr18	61554959	61555159	-	1	NA	NA	NA	-523	NM_146087	93687	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0.085000	0.661692	
mm_164826.1	chr18	36997716	36997916	+	1	NA	NA	NA	-64	NM_138661	192161	Mm.308500	NM_138661	ENSMUSG00000103770	Pcdha9	-	protocadherin alpha 9	protein-coding	0.045000	0.378109	-21(GCTTTTAAGAAC,+,0.00)
mm_153877.1	chr19	46901369	46901569	-	1	NA	NA	NA	60882	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.015000	0.477612	
mm_135498.1	chr16	46481242	46481442	-	1	NA	NA	NA	15625	NM_021496	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.005000	0.398010	
mm_146528.1	chr18	5273189	5273389	-	1	NA	NA	NA	61150	NM_178722	240186	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.000000	0.412935	
mm_55653.1	chr6	72374582	72374782	-	1	NA	NA	NA	5786	NM_016872	53620	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0.000000	0.348259	
mm_63899.1	chr7	139085916	139086116	+	1	NA	NA	NA	15	NM_011993	26757	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	0.100000	0.651741	
mm_19049.1	chr2	77259440	77259640	-	1	NA	NA	NA	21052	NM_175465	228071	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.000000	0.398010	
mm_89598.1	chr10	95973896	95974096	+	1	NA	NA	NA	33333	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.010000	0.313433	
mm_54492.1	chr6	35509950	35510150	-	1	NA	NA	NA	29838	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.348259	
mm_119863.1	chr14	54469240	54469440	+	1	NA	NA	NA	5193	NM_022993	65107	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	0.080000	0.611940	
mm_155208.1	chrX	56779554	56779754	+	1	NA	NA	NA	-29	NM_001077362	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.010000	0.472637	
mm_3463.1	chr1	150104211	150104411	+	1	NA	NA	NA	4280	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.020000	0.432836	
mm_143356.1	chr17	67176252	67176452	-	1	NA	NA	NA	-150117	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.000000	0.353234	
mm_83442.1	chr9	45001017	45001217	-	1	NA	NA	NA	8473	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.000000	0.482587	
mm_155071.1	chrX	43590854	43591054	+	1	NA	NA	NA	-35	NM_001195271	637093	Mm.368463	NM_001195271	ENSMUSG00000078320	Tex13c1	Gm362|Tex13c	TEX13 family member C1	protein-coding	0.005000	0.447761	
mm_75170.1	chr8	36732008	36732208	-	1	NA	NA	NA	946	NM_001194941	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.030000	0.587065	
mm_94503.1	chr11	7197736	7197936	+	1	NA	NA	NA	49	NM_008341	16006	Mm.21300	NM_008341	ENSMUSG00000020429	Igfbp1	-	insulin-like growth factor binding protein 1	protein-coding	0.040000	0.592040	
mm_8885.1	chr1	162875288	162875488	-	1	NA	NA	NA	-8778	NM_010231	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.005000	0.422886	
mm_9342.1	chr1	172052578	172052778	-	1	NA	NA	NA	4918	NM_010916	18071	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	0.010000	0.407960	
mm_26226.1	chr3	138903081	138903281	+	1	NA	NA	NA	160973	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.010000	0.353234	
mm_93384.1	chr10	105574368	105574568	-	1	NA	NA	NA	11	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.065000	0.671642	
mm_60324.1	chr7	44227527	44227727	+	1	NA	NA	NA	2267	NM_001320331	16612	Mm.142722	NM_010639	ENSMUSG00000063903	Klk1	0610007D04Rik|KAL-B|Kal|Klk1b6|Klk6|mGk-6	kallikrein 1	protein-coding	0.015000	0.517413	
mm_138274.1	chr17	34605360	34605560	+	1	NA	NA	NA	-401	NM_001163379	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.015000	0.482587	
mm_81262.1	chr9	108002548	108002748	+	1	NA	NA	NA	0	NM_013785	27399	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0.075000	0.676617	
mm_55404.1	chr6	60829629	60829829	-	1	NA	NA	NA	126	NM_009221	20617	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alphaSYN	synuclein, alpha	protein-coding	0.030000	0.467662	
mm_127281.1	chr15	99931587	99931787	+	1	NA	NA	NA	-29	NM_028180	72277	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	0.040000	0.557214	
mm_51898.1	chr6	90619257	90619457	+	1	NA	NA	NA	111	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.020000	0.597015	
mm_48158.1	chr5	137152353	137152553	-	1	NA	NA	NA	-36246	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.472637	
mm_100210.1	chr11	116853694	116853894	+	1	NA	NA	NA	-221	NM_178620	69900	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	0.095000	0.686567	
mm_152730.1	chr19	18936281	18936481	-	1	NA	NA	NA	64736	NM_146095	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.015000	0.467662	
mm_52950.1	chr6	122990202	122990402	+	1	NA	NA	NA	-65	NM_001005860	474145	Mm.263483	NM_001005860	ENSMUSG00000059639	Clec4a4	Dcir2	C-type lectin domain family 4, member a4	protein-coding	0.000000	0.427861	
mm_9007.1	chr1	165934927	165935127	-	1	NA	NA	NA	-79	NM_198934	18986	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0.005000	0.388060	
mm_97169.1	chr11	75513436	75513636	+	1	NA	NA	NA	-5	NM_001004157	380713	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	0.020000	0.621891	
mm_120971.1	chr14	77940282	77940482	+	1	NA	NA	NA	36143	NM_029495	108670	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.000000	0.253731	
mm_44720.1	chr5	30960104	30960304	-	1	NA	NA	NA	123	NM_001294302	50907	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0.115000	0.661692	
mm_113748.1	chr13	44730928	44731128	+	1	NA	NA	NA	-243	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.090000	0.701493	
mm_1546.1	chr1	72852210	72852410	+	1	NA	NA	NA	22555	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.015000	0.552239	
mm_139743.1	chr17	63044687	63044887	+	1	NA	NA	NA	-163470	NM_010109	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.005000	0.457711	
mm_137212.1	chr17	24162733	24162933	+	1	NA	NA	NA	900	NM_172935	245847	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	0.045000	0.606965	
mm_127599.1	chr15	102401267	102401467	+	1	NA	NA	NA	-4949	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.010000	0.487562	
mm_24938.1	chr3	96560232	96560432	+	1	NA	NA	NA	2375	NM_023719	56338	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.015000	0.507463	
mm_1927.1	chr1	86064565	86064765	+	1	NA	NA	NA	46	NM_027357	70247	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	0.075000	0.686567	
mm_35536.1	chr4	41314737	41314937	-	1	NA	NA	NA	64	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.085000	0.636816	
mm_54080.1	chr6	15728048	15728248	-	1	NA	NA	NA	7487	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.005000	0.492537	-89(AGCTCTATAAAG,-,0.00)
mm_156951.1	chrX	169986591	169986791	+	1	NA	NA	NA	-7774	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.030000	0.587065	
mm_22435.1	chr2	181689196	181689396	-	1	NA	NA	NA	2521	NM_001291205	56470	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0.020000	0.606965	
mm_128137.1	chr15	31467845	31468045	-	1	NA	NA	NA	-14256	NM_145852	252967	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.005000	0.472637	-3(AGCTCTTAAAGA,-,0.00),-2(GCTCTTAAAGAG,+,0.00)
mm_165073.1	chr19	45017553	45017753	+	1	NA	NA	NA	-482	NM_001130526	226154	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.065000	0.646766	
mm_113437.1	chr13	34883138	34883338	+	1	NA	NA	NA	7744	NM_013830	19134	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	0.005000	0.318408	
mm_145847.1	chr18	65449816	65450016	+	1	NA	NA	NA	18919	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.015000	0.437811	
mm_86249.1	chr9	121454569	121454769	-	1	NA	NA	NA	41025	NM_001284508	12424	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.035000	0.572139	
mm_43609.1	chr5	137981434	137981634	+	1	NA	NA	NA	13	NM_013478	12007	Mm.30061	NM_013478	ENSMUSG00000037053	Azgp1	Zag	alpha-2-glycoprotein 1, zinc	protein-coding	0.015000	0.562189	
mm_13942.1	chr2	121187356	121187556	+	1	NA	NA	NA	16288	NM_001290824	51885	Mm.383499	NM_153387	ENSMUSG00000027263	Tubgcp4	4932441P04Rik|76p|D2Ertd435e|GCP-4	tubulin, gamma complex associated protein 4	protein-coding	0.005000	0.398010	
mm_152454.1	chr19	10842804	10843004	-	1	NA	NA	NA	360	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.020000	0.532338	
mm_167288.1	chr8	44629666	44629866	+	1	NA	NA	NA	-320442	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.000000	0.442786	
mm_29328.1	chr3	108082308	108082508	-	1	NA	NA	NA	2994	NM_001346665	109674	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0.005000	0.562189	-10(GCTTTACAAGGC,+,0.00)
mm_64200.1	chr7	141468727	141468927	+	1	NA	NA	NA	38	NM_001111050	12476	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0.015000	0.562189	
mm_126781.1	chr15	86194786	86194986	+	1	NA	NA	NA	-8745	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.095000	0.701493	
mm_40619.1	chr5	64803476	64803676	+	1	NA	NA	NA	53	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.140000	0.766169	
mm_24155.1	chr3	88441021	88441221	+	1	NA	NA	NA	-170	NR_105978	102465611		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	0.065000	0.616915	
mm_17165.1	chr2	25272301	25272501	-	1	NA	NA	NA	17	NM_023464	68475	Mm.21444	NM_023464	ENSMUSG00000026966	Ssna1	1110003H09Rik|1190004J23Rik|AA934184|N14|NA14	SS nuclear autoantigen 1	protein-coding	0.115000	0.661692	
mm_87511.1	chr10	52417795	52417995	+	1	NA	NA	NA	348	NM_030250	52014	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.155000	0.756219	
mm_112483.1	chr13	5869417	5869617	+	1	NA	NA	NA	8028	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.010000	0.407960	71(CTTTTTATGCAG,+,0.00)
mm_104659.1	chr11	97628541	97628741	-	1	NA	NA	NA	1075	NM_175332	103551	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0.120000	0.726368	
mm_67432.1	chr7	80371311	80371511	-	1	NA	NA	NA	-36	NM_172903	140481	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	0.160000	0.815920	
mm_36534.1	chr4	86648109	86648309	-	1	NA	NA	NA	21850	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.010000	0.388060	
mm_153670.1	chr19	44396003	44396203	-	1	NA	NA	NA	11606	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.015000	0.487562	
mm_156655.1	chrX	157702801	157703001	+	1	NA	NA	NA	3928	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.020000	0.417910	
mm_38240.1	chr4	136180460	136180660	-	1	NA	NA	NA	-222	NM_001305399	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.035000	0.582090	
mm_166240.1	chr5	73292770	73292970	+	1	NA	NA	NA	76	NM_001159888	68095	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	0.080000	0.656716	
mm_152184.1	chr19	7427587	7427787	-	1	NA	NA	NA	5114	NR_105957	102466781		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	0.005000	0.368159	
mm_66798.1	chr7	47132638	47132838	-	1	NA	NA	NA	-140	NM_001163565	19259	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0.050000	0.621891	
mm_41254.1	chr5	88815736	88815936	+	1	NA	NA	NA	50823	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.015000	0.487562	
mm_100368.1	chr11	119081634	119081834	+	1	NA	NA	NA	4503	NM_007625	12418	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.080000	0.577114	
mm_44827.1	chr5	33933133	33933333	-	1	NA	NA	NA	3025	NM_011914	24116	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	0.015000	0.333333	
mm_149008.1	chr19	8724028	8724228	+	1	NA	NA	NA	641	NR_002896	83673	Mm.292489	NR_002896	ENSMUSG00000108414	Snhg1	-	small nucleolar RNA host gene 1	ncRNA	0.010000	0.422886	
mm_47129.1	chr5	120431664	120431864	-	1	NA	NA	NA	-122	NM_008499	16873	Mm.5151	NM_008499	ENSMUSG00000029595	Lhx5	Lim2	LIM homeobox protein 5	protein-coding	0.055000	0.487562	
mm_119233.1	chr14	33319643	33319843	+	1	NA	NA	NA	91281	NM_001310452	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.160000	0.766169	-32(GAGCATAAAAGC,-,0.00)
mm_16052.1	chr2	167760250	167760450	+	1	NA	NA	NA	69173	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.015000	0.517413	
mm_121755.1	chr14	19627093	19627293	-	1	NA	NA	NA	-24606	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.005000	0.373134	
mm_90152.1	chr10	118156010	118156210	+	1	NA	NA	NA	14323	NM_010785	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.000000	0.273632	14(GCATTTAGAGAA,+,0.00)
mm_92164.1	chr10	67548873	67549073	-	1	NA	NA	NA	-18	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.175000	0.786070	
mm_133536.1	chr16	91056478	91056678	+	1	NA	NA	NA	-12199	NM_026110	67367	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.020000	0.537313	
mm_128020.1	chr15	24724723	24724923	-	1	NA	NA	NA	688941	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.015000	0.512438	
mm_92857.1	chr10	81530435	81530635	-	1	NA	NA	NA	-6310	NM_010304	14676	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.000000	0.437811	
mm_5679.1	chr1	43161907	43162107	-	1	NA	NA	NA	1954	NM_010212	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.000000	0.427861	
mm_35865.1	chr4	49481191	49481391	-	1	NA	NA	NA	25267	NM_007519	12012	Mm.2859	NM_007519	ENSMUSG00000039653	Baat	AI118337|AI158864|BAT	bile acid-Coenzyme A: amino acid N-acyltransferase	protein-coding	0.005000	0.527363	
mm_157353.1	chrX	37048554	37048754	-	1	NA	NA	NA	-191	NM_173779	245381	Mm.123697	NM_173779	ENSMUSG00000044400	Sowahd	A630014H24Rik|Ankrd58	sosondowah ankyrin repeat domain family member D	protein-coding	0.075000	0.676617	
mm_108671.1	chr12	86519945	86520145	+	1	NA	NA	NA	98401	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.015000	0.567164	-83(CCTCATAAAAAG,-,0.00)
mm_96811.1	chr11	69991580	69991780	+	1	NA	NA	NA	310	NM_019749	56486	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0.105000	0.636816	
mm_87387.1	chr10	45067123	45067323	+	1	NA	NA	NA	9	NM_011156	19072	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.150000	0.781095	
mm_141262.1	chr17	27623304	27623504	-	1	NA	NA	NA	48	NM_019837	56409	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0.180000	0.771144	
mm_95756.1	chr11	54903904	54904104	+	1	NA	NA	NA	1150	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.005000	0.562189	
mm_71818.1	chr8	68886852	68887052	+	1	NA	NA	NA	6397	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.015000	0.422886	
mm_157683.1	chrX	60045066	60045266	-	1	NA	NA	NA	45702	NM_001305797	14071	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	0.020000	0.552239	
mm_38737.1	chr4	145245623	145245823	-	1	NA	NA	NA	1147	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.005000	0.542289	
mm_21670.1	chr2	164425511	164425711	-	1	NA	NA	NA	17577	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.020000	0.547264	
mm_3096.1	chr1	134423911	134424111	+	1	NA	NA	NA	8347	NM_001306069	72674	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.025000	0.562189	
mm_77571.1	chr8	123432336	123432536	-	1	NA	NA	NA	-10520	NM_001253784	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.035000	0.517413	
mm_78951.1	chr9	45138666	45138866	+	1	NA	NA	NA	-276	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.125000	0.741294	
mm_68978.1	chr7	126589144	126589344	-	1	NA	NA	NA	-3427	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.020000	0.597015	
mm_135363.1	chr16	44016293	44016493	-	1	NA	NA	NA	43	NM_153528	207798	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.030000	0.527363	
mm_87396.1	chr10	45335792	45335992	+	1	NA	NA	NA	130	NM_024285	23828	Mm.332793	NM_024285	ENSMUSG00000071317	Bves	Pop1|Popdc1|mBVES	blood vessel epicardial substance	protein-coding	0.195000	0.771144	
mm_103843.1	chr11	83045536	83045736	-	1	NA	NA	NA	-5103	NR_073524	237887	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	pseudo	0.005000	0.398010	-14(GGCTATTTGAGC,-,0.00)
mm_149644.1	chr19	17401020	17401220	+	1	NA	NA	NA	7077	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.005000	0.278607	
mm_107637.1	chr12	52265647	52265847	+	1	NA	NA	NA	168001	NM_029760	76826	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	0.010000	0.552239	
mm_6221.1	chr1	66863226	66863426	-	1	NA	NA	NA	-17	NM_007381	11363	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.155000	0.815920	
mm_10101.1	chr2	3461526	3461726	+	1	NA	NA	NA	13360	NM_022724	64707	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 homolog 2 (Drosophila)	protein-coding	0.000000	0.368159	
mm_128023.1	chr15	24857473	24857673	-	1	NA	NA	NA	556191	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.015000	0.402985	
mm_82404.1	chr9	14771046	14771246	-	1	NA	NA	NA	-116	NM_029306	69325	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	0.020000	0.557214	
mm_87757.1	chr10	60278575	60278775	+	1	NA	NA	NA	1047	NM_001146121	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.427861	
mm_5292.1	chr1	20997509	20997709	-	1	NA	NA	NA	45983	NM_027974	71877	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	0.005000	0.452736	
mm_104622.1	chr11	97301634	97301834	-	1	NA	NA	NA	-13982	NM_025927	67036	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.020000	0.457711	
mm_58398.1	chr7	3217699	3217899	+	1	NA	NA	NA	-827	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.030000	0.582090	0(GACTATATAAGA,-,0.00)
mm_52261.1	chr6	108213217	108213417	+	1	NA	NA	NA	221	NM_010585	16438	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|ENSMUSG00000072853|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0.075000	0.656716	
mm_141884.1	chr17	34860739	34860939	-	1	NA	NA	NA	1675	NM_001142706	14962	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0.025000	0.562189	
mm_122249.1	chr14	33978707	33978907	-	1	NA	NA	NA	-43	NM_001013777	382867	Mm.343728	NM_001013777	ENSMUSG00000044519	Zfp488	Gm1206|Znf488	zinc finger protein 488	protein-coding	0.065000	0.646766	
mm_63439.1	chr7	127479975	127480175	+	1	NA	NA	NA	-5146	NM_010183	14123	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.035000	0.567164	
mm_29245.1	chr3	107218068	107218268	-	1	NA	NA	NA	3564	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.517413	
mm_38005.1	chr4	133720831	133721031	-	1	NA	NA	NA	-3823	NR_106086	102465707		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	0.020000	0.552239	-98(CACTTTAAAAGG,-,0.00)
mm_21964.1	chr2	167252030	167252230	-	1	NA	NA	NA	-11593	NM_008968	19223	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.000000	0.522388	-60(GCTTTTAGACCT,+,0.00)
mm_72859.1	chr8	88428789	88428989	+	1	NA	NA	NA	-66698	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.005000	0.482587	
mm_123480.1	chr14	65980905	65981105	-	1	NA	NA	NA	12522	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.025000	0.537313	
mm_153965.1	chr19	47837301	47837501	-	1	NA	NA	NA	-40	NM_027559	100048534	Mm.29457	NM_027559	ENSMUSG00000044948	Cfap43	4632415N18Rik|4930428C11Rik|4930463G05Rik|AI429486|D19Ertd652e|Wdr96	cilia and flagella associated protein 43	protein-coding	0.130000	0.701493	
mm_124927.1	chr15	12149214	12149414	+	1	NA	NA	NA	-22178	NR_035443	100316684		NR_035443	ENSMUSG00000084592	Mir1898	Mirn1898|mmu-mir-1898	microRNA 1898	ncRNA	0.005000	0.348259	
mm_111007.1	chr12	78980478	78980678	-	1	NA	NA	NA	2900	NM_001170401	268567	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.010000	0.572139	
mm_48542.1	chr5	142905290	142905490	-	1	NA	NA	NA	1364	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.015000	0.557214	
mm_8871.1	chr1	162859737	162859937	-	1	NA	NA	NA	163	NM_001330291	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.020000	0.562189	
mm_33537.1	chr4	130932531	130932731	+	1	NA	NA	NA	-11754	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.005000	0.437811	
mm_172564.1	chr8	110606898	110607098	-	1	NA	NA	NA	-11640	NM_146216	234729	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0.000000	0.512438	-36(CCTTTAAGACCC,+,0.00)
mm_123095.1	chr14	55788643	55788843	-	1	NA	NA	NA	114	NM_001164107	56532	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0.060000	0.577114	
mm_56266.1	chr6	90988327	90988527	-	1	NA	NA	NA	128399	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.205000	0.850746	
mm_112342.1	chr12	116405071	116405271	-	1	NA	NA	NA	-10	NR_028421	319545	Mm.390543	NR_028421		D430020J02Rik	-	RIKEN cDNA D430020J02 gene	ncRNA	0.075000	0.636816	
mm_10804.1	chr2	24349673	24349873	+	1	NA	NA	NA	4402	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.000000	0.472637	
mm_169508.1	chr14	8088323	8088523	-	1	NA	NA	NA	8110	NM_025938	67053	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	0.040000	0.532338	
mm_94012.1	chr10	127621567	127621767	-	1	NA	NA	NA	-519	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.045000	0.631841	
mm_4687.1	chr1	180640599	180640799	+	1	NA	NA	NA	-451	NM_001103182	72568	Mm.275044	NM_175186	ENSMUSG00000058729	Lin9	2700022J23Rik|Bara|Lin-9|TGS|TGS1|mLin-9	lin-9 homolog (C. elegans)	protein-coding	0.045000	0.562189	
mm_134075.1	chr16	8672053	8672253	-	1	NA	NA	NA	0	NM_025821	52502	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.085000	0.676617	
mm_84721.1	chr9	73968965	73969165	-	1	NA	NA	NA	-35498	NM_001081153	208898	Mm.41035	NM_001081153	ENSMUSG00000062151	Unc13c	1500037O19Rik|AU019458|D9Ertd414e|Munc13-3|Unc13h3	unc-13 homolog C (C. elegans)	protein-coding	0.030000	0.606965	
mm_51608.1	chr6	84154654	84154854	+	1	NA	NA	NA	135368	NM_021469	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.000000	0.537313	
mm_39710.1	chr5	27709333	27709533	+	1	NA	NA	NA	82117	NM_018878	55982	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	0.035000	0.522388	
mm_172314.1	chr7	105953893	105954093	-	1	NA	NA	NA	-23	NM_029000	74558	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0.005000	0.502488	9(CCTCATAGAGCC,+,0.00)
mm_14526.1	chr2	132691935	132692135	+	1	NA	NA	NA	1752	NM_028637	73747	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0.015000	0.532338	
mm_4769.1	chr1	182489928	182490128	+	1	NA	NA	NA	27455	NM_009794	12334	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.055000	0.597015	
mm_71968.1	chr8	70534180	70534380	+	1	NA	NA	NA	-5395	NM_007924	13716	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0.015000	0.552239	
mm_77038.1	chr8	109575093	109575293	-	1	NA	NA	NA	3979	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.000000	0.517413	
mm_67237.1	chr7	75308279	75308479	-	1	NA	NA	NA	7	NM_001109753	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.050000	0.507463	
mm_9285.1	chr1	171634624	171634824	-	1	NA	NA	NA	7176	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.477612	
mm_48080.1	chr5	136883042	136883242	-	1	NA	NA	NA	-35	NM_024474	140709	Mm.295020	NM_024474	ENSMUSG00000004415	Col26a1	9430032K24Rik|BC002218|Col26a|Emid2|Emu2	collagen, type XXVI, alpha 1	protein-coding	0.080000	0.696517	
mm_17737.1	chr2	32694048	32694248	-	1	NA	NA	NA	27	NM_010236	14287	Mm.3830	NM_010236	ENSMUSG00000009566	Fpgs	AA408187	folylpolyglutamyl synthetase	protein-coding	0.100000	0.646766	
mm_75636.1	chr8	64838216	64838416	-	1	NA	NA	NA	11608	NM_178633	77113	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0.015000	0.472637	-62(CCATTTCTAGGG,+,0.00)
mm_87595.1	chr10	57631982	57632182	+	1	NA	NA	NA	101	NM_001039051	18768	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.090000	0.726368	
mm_14244.1	chr2	128055078	128055278	+	1	NA	NA	NA	-70860	NM_207681	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.015000	0.507463	
mm_40757.1	chr5	66898386	66898586	+	1	NA	NA	NA	-69930	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.000000	0.572139	
mm_152903.1	chr19	25672134	25672334	-	1	NA	NA	NA	5	NR_045347	100503074	Mm.140012	NR_045347	ENSMUSG00000101089	2610016A17Rik	2610317C19Rik	RIKEN cDNA 2610016A17 gene	ncRNA	0.080000	0.626866	
mm_13622.1	chr2	113440950	113441150	+	1	NA	NA	NA	-14	NM_001285459	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.030000	0.537313	
mm_137930.1	chr17	32538261	32538461	+	1	NA	NA	NA	1732	NM_024442	70101	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0.000000	0.427861	
mm_114129.1	chr13	55211604	55211804	+	1	NA	NA	NA	1922	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.170000	0.820896	
mm_46219.1	chr5	98936557	98936757	-	1	NA	NA	NA	82242	NM_001310677	110075	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0.000000	0.353234	
mm_126136.1	chr15	78344794	78344994	+	1	NA	NA	NA	-3705	NR_106137	102465776		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0.005000	0.552239	
mm_129334.1	chr15	77829357	77829557	-	1	NA	NA	NA	12718	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.005000	0.432836	
mm_40341.1	chr5	45493311	45493511	+	1	NA	NA	NA	37	NM_024434	66988	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0.155000	0.771144	
mm_18522.1	chr2	63088162	63088362	-	1	NA	NA	NA	96025	NM_133207	170738	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.000000	0.393035	
mm_157432.1	chrX	38576097	38576297	-	1	NA	NA	NA	-1	NM_001110142	72584	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	0.035000	0.487562	
mm_50748.1	chr6	52825750	52825950	+	1	NA	NA	NA	83770	NM_001168277	231986	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.010000	0.527363	
mm_10599.1	chr2	18677074	18677274	+	1	NA	NA	NA	156	NM_007552	12151	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	0.155000	0.791045	
mm_124550.1	chr14	122905014	122905214	-	1	NA	NA	NA	8051	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.000000	0.462687	
mm_7536.1	chr1	124423581	124423781	-	1	NA	NA	NA	-378122	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.373134	-14(AGCCTTTAAAGG,-,0.00),-13(GCCTTTAAAGGG,+,0.00),-13(GCCTTTAAAGGG,-,0.00),-12(CCTTTAAAGGGG,+,0.00),-11(CTTTAAAGGGGC,+,0.00)
mm_152589.1	chr19	11604681	11604881	-	1	NA	NA	NA	23	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.010000	0.482587	
mm_128438.1	chr15	50709121	50709321	-	1	NA	NA	NA	179828	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.010000	0.363184	
mm_117516.1	chr13	80885921	80886121	-	1	NA	NA	NA	2599	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.110000	0.736318	
mm_106482.1	chr11	120216537	120216737	-	1	NA	NA	NA	-16310	NM_001347621	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.015000	0.532338	
mm_35696.1	chr4	44148995	44149195	-	1	NA	NA	NA	18443	NM_175201	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.020000	0.482587	
mm_126610.1	chr15	82898971	82899171	+	1	NA	NA	NA	-9	NR_045068	100504637	Mm.440928	NR_045068	ENSMUSG00000100199	Gm20324	-	predicted gene, 20324	ncRNA	0.115000	0.771144	
mm_50038.1	chr6	41141093	41141293	+	1	NA	NA	NA	-105684	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.417910	
mm_51037.1	chr6	65596036	65596236	+	1	NA	NA	NA	5738	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.005000	0.313433	
mm_128481.1	chr15	50889905	50890105	-	1	NA	NA	NA	36	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.075000	0.517413	
mm_16432.1	chr2	180394224	180394424	+	1	NA	NA	NA	-4055	NR_029901	723954		NR_029901	ENSMUSG00000065460	Mir133a-2	Mirn133a-2|mir-133a-2	microRNA 133a-2	ncRNA	0.005000	0.487562	
mm_37373.1	chr4	120968741	120968941	-	1	NA	NA	NA	4481	NR_105982	102465614		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.025000	0.527363	
mm_38095.1	chr4	134245407	134245607	-	1	NA	NA	NA	84	NM_024215	68040	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	0.090000	0.626866	
mm_136964.1	chr17	15704918	15705118	+	1	NA	NA	NA	51	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.205000	0.776119	
mm_91259.1	chr10	23203733	23203933	-	1	NA	NA	NA	146057	NM_001347372	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.015000	0.407960	
mm_53145.1	chr6	125236007	125236207	+	1	NA	NA	NA	920	NM_001033126	21940	Mm.367714	NM_001033126	ENSMUSG00000030336	Cd27	S152|Tnfrsf7|Tp55	CD27 antigen	protein-coding	0.010000	0.462687	
mm_39844.1	chr5	30889267	30889467	+	1	NA	NA	NA	33	NM_001294262	231093	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0.070000	0.646766	
mm_170714.1	chr2	144158290	144158490	-	1	NA	NA	NA	30900	NR_136884	433481	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.020000	0.507463	-76(GCGTATTAATGG,-,0.00)
mm_145378.1	chr18	56925643	56925843	+	1	NA	NA	NA	-195	NM_177115	320253	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0.075000	0.626866	
mm_126095.1	chr15	77966585	77966785	+	1	NA	NA	NA	4139	NM_018749	55944	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	0.020000	0.532338	
mm_119647.1	chr14	51984783	51984983	+	1	NA	NA	NA	50	NM_198249	268739	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	0.145000	0.800995	
mm_83725.1	chr9	50775142	50775342	-	1	NA	NA	NA	17	NR_045601	102580	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	0.070000	0.507463	
mm_13080.1	chr2	91206366	91206566	+	1	NA	NA	NA	3554	NM_007387	11432	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.015000	0.502488	
mm_35949.1	chr4	53113403	53113603	-	1	NA	NA	NA	46392	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.020000	0.502488	
mm_30446.1	chr3	153725042	153725242	-	1	NA	NA	NA	-9	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.095000	0.726368	
mm_10238.1	chr2	6871435	6871635	+	1	NA	NA	NA	500	NM_001347094	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.010000	0.412935	60(TTCTATTTAGGG,-,0.00)
mm_22030.1	chr2	168051849	168052049	-	1	NA	NA	NA	-29055	NM_021409	58220	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0.000000	0.497512	
mm_132997.1	chr16	55818456	55818656	+	1	NA	NA	NA	3582	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.025000	0.517413	22(TTCTTTTAAAAG,-,0.00),24(CTTTTAAAAGAA,+,0.00)
mm_84657.1	chr9	71663296	71663496	-	1	NA	NA	NA	-71036	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	0.025000	0.512438	-35(CCCTTTAAATAC,+,0.00),-35(CCCTTTAAATAC,-,0.00)
mm_83834.1	chr9	54217946	54218146	-	1	NA	NA	NA	-24604	NM_007810	13075	Mm.5199	NM_007810	ENSMUSG00000032274	Cyp19a1	Ar|ArKO|Cyp19|Int-5|Int5|p450arom	cytochrome P450, family 19, subfamily a, polypeptide 1	protein-coding	0.030000	0.398010	
mm_83599.1	chr9	48494886	48495086	-	1	NA	NA	NA	344	NM_001326355	67010	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	0.075000	0.552239	
mm_22539.1	chr3	8743567	8743767	+	1	NA	NA	NA	-76629	NM_010423	15213	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.020000	0.417910	
mm_84823.1	chr9	77917054	77917254	-	1	NA	NA	NA	-211	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.040000	0.547264	
mm_117547.1	chr13	83729596	83729796	-	1	NA	NA	NA	1590	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.050000	0.472637	
mm_91876.1	chr10	59583188	59583388	-	1	NA	NA	NA	33404	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.005000	0.378109	
mm_112524.1	chr13	9276449	9276649	+	1	NA	NA	NA	24	NM_001081426	208440	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.195000	0.825871	
mm_162078.1	chrX	24775064	24775264	-	1	NA	NA	NA	0	NM_001081657	546282	Mm.391219	NM_001081657	ENSMUSG00000093923	Gm5935	EG546282	predicted gene 5935	protein-coding	0.010000	0.462687	
mm_85594.1	chr9	107337897	107338097	-	1	NA	NA	NA	353	NM_133984	69536	Mm.259467	NM_133984	ENSMUSG00000032579	Hemk1	2310008M14Rik|AW049265	HemK methyltransferase family member 1	protein-coding	0.025000	0.507463	
mm_33431.1	chr4	130056096	130056296	+	1	NA	NA	NA	8356	NM_028266	107581	Mm.41860	NM_028266	ENSMUSG00000040690	Col16a1	2700007F12Rik|A530052M23Rik|AI838662|CA1F	collagen, type XVI, alpha 1	protein-coding	0.010000	0.592040	
mm_14596.1	chr2	136058131	136058331	+	1	NA	NA	NA	304	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.070000	0.626866	
mm_149999.1	chr19	29274971	29275171	+	1	NA	NA	NA	23268	NM_008413	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.015000	0.422886	
mm_30116.1	chr3	139075214	139075414	-	1	NA	NA	NA	-113	NM_001040690	229877	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.220000	0.875622	
mm_60980.1	chr7	48975718	48975918	+	1	NA	NA	NA	16745	NM_001111016	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.000000	0.427861	
mm_126126.1	chr15	78331779	78331979	+	1	NA	NA	NA	5889	NM_007780	12983	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.005000	0.462687	
mm_82190.1	chr9	123940470	123940670	+	1	NA	NA	NA	28122	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.000000	0.432836	
mm_40276.1	chr5	41707074	41707274	+	1	NA	NA	NA	517	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.055000	0.597015	
mm_99599.1	chr11	104526978	104527178	+	1	NA	NA	NA	23542	NM_001285990	217232	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	0.000000	0.462687	-26(AGGTCTAAAAGG,-,0.00)
mm_12762.1	chr2	79255845	79256045	+	1	NA	NA	NA	519	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.030000	0.592040	
mm_145133.1	chr18	44828361	44828561	+	1	NA	NA	NA	-204	NM_001163013	240255	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	0.155000	0.741294	
mm_89491.1	chr10	93819881	93820081	+	1	NA	NA	NA	-11574	NM_183199	327799	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.020000	0.542289	
mm_130549.1	chr15	98957059	98957259	-	1	NA	NA	NA	-3658	NM_011653	22142	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	0.000000	0.492537	
mm_129227.1	chr15	76612869	76613069	-	1	NA	NA	NA	3883	NM_028064	72027	Mm.276829	NM_028064	ENSMUSG00000063354	Slc39a4	1600025H15Rik|AU041686|AWMS2|ZIP4	solute carrier family 39 (zinc transporter), member 4	protein-coding	0.045000	0.587065	
mm_114485.1	chr13	69612170	69612370	+	1	NA	NA	NA	254	NM_145354	28114	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	0.095000	0.636816	
mm_131789.1	chr16	22898773	22898973	+	1	NA	NA	NA	-4487	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.055000	0.631841	
mm_157669.1	chrX	59134268	59134468	-	1	NA	NA	NA	68	NM_010200	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding	0.115000	0.716418	
mm_160012.1	chr6	125603663	125603863	+	1	NA	NA	NA	50815	NM_011708	22371	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.030000	0.487562	
mm_38697.1	chr4	145214280	145214480	-	1	NA	NA	NA	-19375	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.000000	0.522388	-49(GCTTATAAATGC,+,0.00),-49(GCTTATAAATGC,-,0.00)
mm_103438.1	chr11	75926395	75926595	-	1	NA	NA	NA	-604	NM_001291159	380714	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	0.000000	0.522388	
mm_147382.1	chr18	43737220	43737420	-	1	NA	NA	NA	-83	NM_009258	20730	Mm.272	NM_009258	ENSMUSG00000024503	Spink1	Spink3|p12	serine peptidase inhibitor, Kazal type 1	protein-coding	0.000000	0.447761	
mm_70190.1	chr7	143780414	143780614	-	1	NA	NA	NA	3986	NM_175534	244238	Mm.183561	NM_175534	ENSMUSG00000048965	Mrgpre	C130069N09Rik|Ebrt3|Mgrf|MrgE	MAS-related GPR, member E	protein-coding	0.005000	0.537313	
mm_126078.1	chr15	77775108	77775308	+	1	NA	NA	NA	-19979	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.035000	0.616915	
mm_114039.1	chr13	53393588	53393788	+	1	NA	NA	NA	-1	NR_037991	100040421	Mm.83967	NR_037991	ENSMUSG00000107008	Gm2762	1700025I17Rik	predicted gene 2762	ncRNA	0.020000	0.532338	
mm_129128.1	chr15	76190078	76190278	-	1	NA	NA	NA	5532	NM_201394	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.035000	0.636816	
mm_97425.1	chr11	78069868	78070068	+	1	NA	NA	NA	-3037	NR_029556	387162		NR_029556	ENSMUSG00000065401	Mir144	Mirn144|mir-144|mmu-mir-144	microRNA 144	ncRNA	0.010000	0.597015	
mm_95852.1	chr11	57831588	57831788	+	1	NA	NA	NA	459	NM_008213	15110	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed transcript 1	protein-coding	0.065000	0.646766	
mm_86729.1	chr10	19065398	19065598	+	1	NA	NA	NA	-50088	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.000000	0.422886	19(CCTTATAGGCAG,+,0.00)
mm_76308.1	chr8	84638792	84638992	-	1	NA	NA	NA	23960	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.095000	0.766169	
mm_25719.1	chr3	122729116	122729316	+	1	NA	NA	NA	58	NM_153422	242202	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	0.085000	0.641791	
mm_117269.1	chr13	64432379	64432579	-	1	NA	NA	NA	-74	NM_053180	105278	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	0.055000	0.557214	
mm_78656.1	chr9	40455801	40456001	+	1	NA	NA	NA	-137	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.095000	0.646766	
mm_78871.1	chr9	44419231	44419431	+	1	NA	NA	NA	-1324	NM_201372	382073	Mm.259573	NM_201372	ENSMUSG00000043923	Ccdc84	D630044F24Rik|Gm1114	coiled-coil domain containing 84	protein-coding	0.030000	0.472637	
mm_87154.1	chr10	36506814	36507014	+	1	NA	NA	NA	107	NM_001253356	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0.100000	0.701493	
mm_85097.1	chr9	94533026	94533226	-	1	NA	NA	NA	4955	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0.010000	0.388060	
mm_144425.1	chr18	21001214	21001414	+	1	NA	NA	NA	14	NM_001303005	56515	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	0.105000	0.726368	
mm_36236.1	chr4	63154189	63154389	-	1	NA	NA	NA	-117	NM_007443	11699	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.010000	0.532338	
mm_65983.1	chr7	30456950	30457150	-	1	NA	NA	NA	465	NM_172898	243911	Mm.113908	NM_172898	ENSMUSG00000036915	Kirrel2	C330019F22Rik|NEPH3|NLG1	kin of IRRE like 2 (Drosophila)	protein-coding	0.060000	0.587065	
mm_24834.1	chr3	95658966	95659166	+	1	NA	NA	NA	345	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.185000	0.805970	
mm_36680.1	chr4	96507349	96507549	-	1	NA	NA	NA	-63	NM_001104927	665095	Mm.331717	NM_001104927	ENSMUSG00000082932	Cyp2j8	Cyp2j8-ps|OTTMUSG00000007938	cytochrome P450, family 2, subfamily j, polypeptide 8	protein-coding	0.000000	0.467662	
mm_63736.1	chr7	130894952	130895152	+	1	NA	NA	NA	-13216	NR_106028	102466219		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0.015000	0.388060	-55(GTCTTTTAAAGT,-,0.00),-54(TCTTTTAAAGTT,+,0.00)
mm_81670.1	chr9	111027265	111027465	+	1	NA	NA	NA	8073	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.015000	0.522388	
mm_26293.1	chr3	142507593	142507793	+	1	NA	NA	NA	10759	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.015000	0.432836	
mm_82613.1	chr9	21760185	21760385	-	1	NA	NA	NA	1	NM_026282	67629	Mm.295642	NM_026282	ENSMUSG00000074476	Spc24	2410030K01Rik|AV109292|Spbc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	0.115000	0.666667	
mm_27597.1	chr3	59131133	59131333	-	1	NA	NA	NA	95	NM_001287121	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.010000	0.442786	
mm_123702.1	chr14	69732446	69732646	-	1	NA	NA	NA	24	NM_134078	105513	Mm.159637	NM_134078	ENSMUSG00000034190	Chmp7	4930596K11Rik|6330407G04Rik|AI450338|AW550775	charged multivesicular body protein 7	protein-coding	0.090000	0.686567	
mm_7931.1	chr1	133910942	133911142	-	1	NA	NA	NA	-3043	NM_001160420	269120	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	0.000000	0.482587	75(CCATTTATATTC,+,0.00)
mm_145905.1	chr18	65800513	65800713	+	1	NA	NA	NA	35	NM_025468	66286	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0.085000	0.691542	
mm_15544.1	chr2	158385608	158385808	+	1	NA	NA	NA	10070	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.005000	0.358209	
mm_126152.1	chr15	78409621	78409821	+	1	NA	NA	NA	2617	NM_138670	246221	Mm.294215	NM_138670	ENSMUSG00000071711	Mpst	Mst	mercaptopyruvate sulfurtransferase	protein-coding	0.020000	0.527363	
mm_38789.1	chr4	148089114	148089314	-	1	NA	NA	NA	-1150	NM_001301281	11610	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.005000	0.487562	
mm_102918.1	chr11	69599913	69600113	-	1	NA	NA	NA	5947	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.020000	0.472637	-82(GCCTTTAAAAAA,-,0.00),-81(CCTTTAAAAAAC,+,0.00)
mm_10294.1	chr2	10372362	10372562	+	1	NA	NA	NA	26	NM_177386	353282	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0.080000	0.592040	
mm_60327.1	chr7	44236066	44236266	+	1	NA	NA	NA	-44	NR_029436	70004	Mm.158317	NR_029436	ENSMUSG00000038782	1700028J19Rik	-	RIKEN cDNA 1700028J19 gene	ncRNA	0.015000	0.562189	
mm_130190.1	chr15	93926948	93927148	-	1	NA	NA	NA	63	NR_045737	77248	Mm.410768	NR_045737		9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	0.010000	0.497512	
mm_96666.1	chr11	69409636	69409836	+	1	NA	NA	NA	3939	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.035000	0.537313	
mm_87403.1	chr10	45634485	45634685	+	1	NA	NA	NA	56756	NM_172473	209462	Mm.458633	NM_172473	ENSMUSG00000038822	Hace1	1700042J16Rik|A730034A22Rik|BC025474	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	protein-coding	0.005000	0.268657	
mm_65099.1	chr7	19279944	19280144	-	1	NA	NA	NA	5	NM_177691	232941	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	0.045000	0.572139	
mm_14264.1	chr2	128591114	128591314	+	1	NA	NA	NA	-1127	NM_001310641	241634	Mm.297682	NM_001310641	ENSMUSG00000074812	Spdye4c	Gm355|SpeedyB3|SpyB3	speedy/RINGO cell cycle regulator family, member E4C	protein-coding	0.015000	0.512438	
mm_13537.1	chr2	110654825	110655025	+	1	NA	NA	NA	57626	NM_001177624	241612	Mm.277148	NM_001003915	ENSMUSG00000041644	Slc5a12	AI315119|D630015G19|SMCT2	solute carrier family 5 (sodium/glucose cotransporter), member 12	protein-coding	0.005000	0.432836	
mm_173224.1	chrX	75104342	75104542	+	1	NA	NA	NA	8588	NM_001030307	245474	Mm.291062	NM_001030307	ENSMUSG00000031403	Dkc1	BC068171	dyskeratosis congenita 1, dyskerin	protein-coding	0.005000	0.467662	
mm_30464.1	chr3	154093995	154094195	-	1	NA	NA	NA	120659	NM_001081263	242259	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0.010000	0.487562	
mm_19481.1	chr2	93037148	93037348	-	1	NA	NA	NA	7900	NR_110333	433456	Mm.235231	NM_001002794	ENSMUSG00000075027	4631405J19Rik	-	RIKEN cDNA 4631405J19 gene	ncRNA	0.015000	0.562189	
mm_102440.1	chr11	59526601	59526801	-	1	NA	NA	NA	-15985	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.020000	0.601990	
mm_75547.1	chr8	57529020	57529220	-	1	NA	NA	NA	17277	NM_008252	97165	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.015000	0.457711	
mm_93242.1	chr10	95415921	95416121	-	1	NA	NA	NA	191	NM_001168655	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.075000	0.671642	
mm_23882.1	chr3	83030935	83031135	+	1	NA	NA	NA	4882	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.030000	0.512438	-6(GTTTTAAGAGCC,+,0.00)
mm_144258.1	chr18	11047530	11047730	+	1	NA	NA	NA	-4880	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.025000	0.467662	
mm_122608.1	chr14	51057384	51057584	-	1	NA	NA	NA	-242	NM_001011875	497106	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	0.025000	0.542289	
mm_131544.1	chr16	17807212	17807412	+	1	NA	NA	NA	10030	NM_153790	224024	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0.170000	0.776119	
mm_87410.1	chr10	45868654	45868854	+	1	NA	NA	NA	61050	NR_040624	320363	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	0.000000	0.412935	
mm_112260.1	chr12	113932328	113932528	-	1	NA	NA	NA	388520	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.000000	0.432836	
mm_27878.1	chr3	79172954	79173154	-	1	NA	NA	NA	-27179	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.030000	0.393035	
mm_146273.1	chr18	77882126	77882326	+	1	NA	NA	NA	-56241	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.025000	0.542289	
mm_139298.1	chr17	48324119	48324319	+	1	NA	NA	NA	8057	NM_177083	320148	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.005000	0.532338	
mm_114140.1	chr13	55272846	55273046	+	1	NA	NA	NA	49034	NM_009000	19336	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	0.005000	0.368159	
mm_159411.1	chr3	103576116	103576316	+	1	NA	NA	NA	90	NM_001276681	54524	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	0.100000	0.706468	
mm_134991.1	chr16	32145588	32145788	-	1	NA	NA	NA	19788	NM_146069	224109	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.000000	0.398010	11(TCTTATATAGTC,+,0.00)
mm_112270.1	chr12	114176814	114177014	-	1	NA	NA	NA	292552	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.005000	0.393035	
mm_85593.1	chr9	107334512	107334712	-	1	NA	NA	NA	3738	NM_133984	69536	Mm.259467	NM_133984	ENSMUSG00000032579	Hemk1	2310008M14Rik|AW049265	HemK methyltransferase family member 1	protein-coding	0.015000	0.582090	
mm_91225.1	chr10	22067564	22067764	-	1	NA	NA	NA	415	NM_053264	114671	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	0.040000	0.517413	
mm_166583.1	chr6	53452820	53453020	-	1	NA	NA	NA	-120454	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.020000	0.527363	
mm_126021.1	chr15	76690497	76690697	+	1	NA	NA	NA	-6129	NM_182805	76282	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	0.020000	0.641791	
mm_78991.1	chr9	45403050	45403250	+	1	NA	NA	NA	12	NM_052823	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.005000	0.616915	
mm_169842.1	chr16	3115416	3115616	-	1	NA	NA	NA	-476882	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.010000	0.368159	
mm_160779.1	chr10	127341370	127341570	-	1	NA	NA	NA	109	NM_010296	14632	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	0.025000	0.582090	
mm_138541.1	chr17	35262713	35262913	+	1	NA	NA	NA	-281	NM_010380	14964	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	0.025000	0.557214	
mm_98402.1	chr11	94328061	94328261	+	1	NA	NA	NA	160	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.160000	0.855721	
mm_18178.1	chr2	45110182	45110382	-	1	NA	NA	NA	-5	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.105000	0.706468	
mm_119328.1	chr14	38626649	38626849	+	1	NA	NA	NA	-271553	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA	0.000000	0.353234	
mm_70410.1	chr8	11406723	11406923	+	1	NA	NA	NA	-71106	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.025000	0.462687	
mm_173078.1	chrX	137427613	137427813	+	1	NA	NA	NA	-143041	NM_030688	60367	Mm.328321	NM_030688	ENSMUSG00000059203	Il1rapl2	-	interleukin 1 receptor accessory protein-like 2	protein-coding	0.010000	0.497512	
mm_6263.1	chr1	69537105	69537305	-	1	NA	NA	NA	148755	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.010000	0.363184	
mm_22648.1	chr3	14869120	14869320	+	1	NA	NA	NA	5682	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.015000	0.388060	
mm_96058.1	chr11	59566285	59566485	+	1	NA	NA	NA	5353	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.025000	0.552239	
mm_44305.1	chr5	8996918	8997118	-	1	NA	NA	NA	128	NM_023733	74114	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.075000	0.706468	
mm_172590.1	chr8	126421991	126422191	-	1	NA	NA	NA	-410	NM_174987	67892	Mm.31946	NM_174987	ENSMUSG00000051671	Coa6	1810063B05Rik|AI447995	cytochrome c oxidase assembly factor 6	protein-coding	0.030000	0.502488	
mm_35018.1	chr4	3875074	3875274	-	1	NA	NA	NA	-3069	NM_020021	17451	Mm.459300	NM_020021	ENSMUSG00000078365	Mos	c-mos	Moloney sarcoma oncogene	protein-coding	0.115000	0.666667	-4(GCCTTTTTAAAA,-,0.00)
mm_151015.1	chr19	46761533	46761733	+	1	NA	NA	NA	24	NM_001102471	94219	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0.095000	0.686567	
mm_151976.1	chr19	5826824	5827024	-	1	NA	NA	NA	18554	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.015000	0.417910	
mm_121138.1	chr14	101887375	101887575	+	1	NA	NA	NA	46852	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.035000	0.537313	
mm_117565.1	chr13	85285362	85285562	-	1	NA	NA	NA	4024	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.000000	0.318408	
mm_87066.1	chr10	29143585	29143785	+	1	NA	NA	NA	-311	NM_026138	67412	Mm.390264	NM_026138	ENSMUSG00000038916	Soga3	6330407J23Rik	SOGA family member 3	protein-coding	0.060000	0.587065	7(GCCTCTAAGAGC,-,0.00)
mm_122449.1	chr14	45299863	45300063	-	1	NA	NA	NA	18609	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.020000	0.467662	
mm_111830.1	chr12	107146689	107146889	-	1	NA	NA	NA	-430465	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.005000	0.477612	
mm_114842.1	chr13	92642132	92642332	+	1	NA	NA	NA	31094	NM_172588	218442	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.000000	0.532338	
mm_72552.1	chr8	84026059	84026259	+	1	NA	NA	NA	4685	NM_028877	74337	Mm.250943	NM_028877	ENSMUSG00000047986	Palm3	4432412L15Rik|AL024300	paralemmin 3	protein-coding	0.130000	0.756219	
mm_161181.1	chr13	47014502	47014702	-	1	NA	NA	NA	248	NM_175340	105193	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	0.105000	0.711443	
mm_130255.1	chr15	96642154	96642354	-	1	NA	NA	NA	89	NM_001166456	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.060000	0.611940	
mm_107481.1	chr12	37880819	37881019	+	1	NA	NA	NA	214	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	0.045000	0.572139	
mm_33545.1	chr4	130934556	130934756	+	1	NA	NA	NA	-9729	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.010000	0.597015	
mm_50624.1	chr6	50144638	50144838	+	1	NA	NA	NA	34497	NM_001164733	56524	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.005000	0.477612	
mm_151457.1	chr19	58143950	58144150	+	1	NA	NA	NA	92883	NR_049196	100885835		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0.015000	0.492537	
mm_156085.1	chrX	110814170	110814370	+	1	NA	NA	NA	-109	NM_008901	18994	Mm.56946	NM_008901	ENSMUSG00000056854	Pou3f4	Brn-4|Brn4|OTF-9|Otf9|Slf|oct-9	POU domain, class 3, transcription factor 4	protein-coding	0.050000	0.582090	
mm_116303.1	chr13	36734171	36734371	-	1	NA	NA	NA	206	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.070000	0.507463	
mm_13253.1	chr2	98663788	98663988	+	1	NA	NA	NA	1196231	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.015000	0.348259	
mm_106447.1	chr11	119937336	119937536	-	1	NA	NA	NA	-5656	NM_001037754	108100	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0.025000	0.552239	
mm_45584.1	chr5	74065647	74065847	-	1	NA	NA	NA	2664	NM_177561	69727	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.015000	0.532338	
mm_96065.1	chr11	59662629	59662829	+	1	NA	NA	NA	234	NM_012027	26936	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	0.195000	0.830846	
mm_3999.1	chr1	164569652	164569852	+	1	NA	NA	NA	-111397	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.000000	0.452736	
mm_87039.1	chr10	28730716	28730916	+	1	NA	NA	NA	62456	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.010000	0.313433	46(CTTTTTAAAAAG,+,0.00),46(CTTTTTAAAAAG,-,0.00)
mm_6106.1	chr1	64033442	64033642	-	1	NA	NA	NA	8959	NR_105864	102466760		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.020000	0.363184	
mm_78396.1	chr9	28920337	28920537	+	1	NA	NA	NA	1042692	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.005000	0.353234	
mm_104275.1	chr11	89403415	89403615	-	1	NA	NA	NA	15433	NM_172534	382543	Mm.60997	NM_172534	ENSMUSG00000047773	Ankfn1	4932411E22Rik|Gm1175|nmf9	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding	0.030000	0.482587	
mm_107206.1	chr12	26443816	26444016	+	1	NA	NA	NA	12536	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.005000	0.422886	
mm_106525.1	chr11	120567911	120568111	-	1	NA	NA	NA	4925	NM_011032	18453	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.010000	0.492537	
mm_97154.1	chr11	75463835	75464035	+	1	NA	NA	NA	219	NR_029739	387141		NR_029739	ENSMUSG00000065529	Mir22	Mirn22|mmu-mir-22	microRNA 22	ncRNA	0.005000	0.527363	
mm_47946.1	chr5	135404691	135404891	-	1	NA	NA	NA	-10245	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.070000	0.611940	
mm_139638.1	chr17	57377027	57377227	+	1	NA	NA	NA	18441	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.328358	46(TTCCCTTAAAGC,-,0.00)
mm_115399.1	chr13	113818074	113818274	+	1	NA	NA	NA	23666	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.000000	0.373134	
mm_112914.1	chr13	20922975	20923175	+	1	NA	NA	NA	128962	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.452736	
mm_101593.1	chr11	34682139	34682339	-	1	NA	NA	NA	101666	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.020000	0.353234	
mm_12634.1	chr2	74705084	74705284	+	1	NA	NA	NA	-305	NM_001290730	15437	Mm.280673	NM_008276	ENSMUSG00000027102	Hoxd8	4921540P06Rik|AI047735|Hox-4.3|Hox-5.4	homeobox D8	protein-coding	0.130000	0.731343	
mm_68088.1	chr7	101903663	101903863	-	1	NA	NA	NA	22	NM_001282088	791260	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0.005000	0.487562	
mm_125197.1	chr15	32920704	32920904	+	1	NA	NA	NA	81	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0.080000	0.656716	
mm_78142.1	chr9	20972867	20973067	+	1	NA	NA	NA	3826	NM_010333	14739	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0.025000	0.582090	
mm_157253.1	chrX	19150682	19150882	-	1	NA	NA	NA	-3811	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.015000	0.407960	79(GTATTTAAAAGG,-,0.00)
mm_131082.1	chr16	4741512	4741712	+	1	NA	NA	NA	-1	NM_010443	15369	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.000000	0.477612	
mm_126575.1	chr15	82256230	82256430	+	1	NA	NA	NA	307	NR_037698	76505	Mm.23023	NR_037697	ENSMUSG00000068099	1500009C09Rik	-	RIKEN cDNA 1500009C09 gene	ncRNA	0.030000	0.582090	
mm_83791.1	chr9	52172528	52172728	-	1	NA	NA	NA	-4517	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.015000	0.432836	
mm_41015.1	chr5	81043147	81043347	+	1	NA	NA	NA	21654	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.015000	0.507463	
mm_158925.1	chr1	59764387	59764587	+	1	NA	NA	NA	208	NM_007561	12168	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0.045000	0.532338	
mm_43674.1	chr5	138789200	138789400	+	1	NA	NA	NA	-30780	NM_001195128	384244	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0.005000	0.427861	
mm_72609.1	chr8	84597032	84597232	+	1	NA	NA	NA	65720	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.035000	0.507463	
mm_4014.1	chr1	165461241	165461441	+	1	NA	NA	NA	133	NM_027430	70456	Mm.195625	NM_027430	ENSMUSG00000026568	Mpc2	0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43	mitochondrial pyruvate carrier 2	protein-coding	0.100000	0.711443	
mm_143628.1	chr17	78894999	78895199	-	1	NA	NA	NA	11893	NM_001163625	73671	Mm.45514	NM_001163625	ENSMUSG00000038045	Sult6b1	2410078J06Rik|AV101767|ST6B1	sulfotransferase family, cytosolic, 6B, member 1	protein-coding	0.020000	0.542289	
mm_98290.1	chr11	89066284	89066484	+	1	NA	NA	NA	5633	NR_110336	414094	Mm.124287	NM_001001497		Dgkeos	A930013B10Rik	diacylglycerol kinase, epsilon, opposite strand	ncRNA	0.015000	0.512438	
mm_123288.1	chr14	61439983	61440183	-	1	NA	NA	NA	-136	NM_008466	16648	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0.095000	0.656716	
mm_71347.1	chr8	45627987	45628187	+	1	NA	NA	NA	336	NM_001310707	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.035000	0.597015	-55(GGTTCTAAAGGG,-,0.00)
mm_133103.1	chr16	65219296	65219496	+	1	NA	NA	NA	-113612	NM_008310	15557	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	0.005000	0.353234	
mm_154248.1	chr19	60766501	60766701	-	1	NA	NA	NA	7784	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.045000	0.587065	
mm_156287.1	chrX	136837328	136837528	+	1	NA	NA	NA	14682	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.000000	0.308458	
mm_148483.1	chr19	4140206	4140406	+	1	NA	NA	NA	507	NM_206973	269053	Mm.131677	NM_206973	ENSMUSG00000044724	Gpr152	A930009H15Rik|Gm673	G protein-coupled receptor 152	protein-coding	0.025000	0.601990	
mm_117087.1	chr13	59746835	59747035	-	1	NA	NA	NA	13285	NR_045977	75223	Mm.444771	NR_045977	ENSMUSG00000097502	4930528D03Rik	-	RIKEN cDNA 4930528D03 gene	ncRNA	0.020000	0.562189	
mm_129111.1	chr15	76069669	76069869	-	1	NA	NA	NA	15	NM_134089	105782	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	0.140000	0.721393	
mm_24036.1	chr3	87796792	87796992	+	1	NA	NA	NA	-59	NM_011832	23920	Mm.42041	NM_011832	ENSMUSG00000005640	Insrr	Irr	insulin receptor-related receptor	protein-coding	0.070000	0.626866	
mm_130432.1	chr15	98165508	98165708	-	1	NA	NA	NA	-30	NM_001170711	78541	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0.005000	0.542289	
mm_11557.1	chr2	32751475	32751675	+	1	NA	NA	NA	-5659	NR_045485	30933	Mm.200695	NM_152800	ENSMUSG00000009563	Tor2a	Prosalusin	torsin family 2, member A	protein-coding	0.060000	0.626866	
mm_91221.1	chr10	22048434	22048634	-	1	NA	NA	NA	19545	NM_053264	114671	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	0.005000	0.487562	
mm_4555.1	chr1	177444561	177444761	+	1	NA	NA	NA	0	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.010000	0.477612	
mm_155188.1	chrX	56374484	56374684	+	1	NA	NA	NA	-2	NR_028086	320237	Mm.233168	NM_183030		Smim10l2a	6330419J24Rik|Ncrna00086	small integral membrane protein 10 like 2A	ncRNA	0.080000	0.706468	
mm_8531.1	chr1	155050183	155050383	-	1	NA	NA	NA	49353	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.015000	0.512438	
mm_161758.1	chr17	35425191	35425391	+	1	NA	NA	NA	414	NM_207648	110557	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	0.085000	0.621891	
mm_5521.1	chr1	37755325	37755525	-	1	NA	NA	NA	-35614	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.005000	0.338308	
mm_157187.1	chrX	10717354	10717554	-	1	NA	NA	NA	89	NM_001166635	68041	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	0.070000	0.681592	
mm_92564.1	chr10	79874236	79874436	-	1	NA	NA	NA	298	NM_181681	216152	Mm.29678	NM_181681	ENSMUSG00000035835	Plppr3	Lppr3|Prg2	phospholipid phosphatase related 3	protein-coding	0.130000	0.731343	
mm_119347.1	chr14	41105269	41105469	+	1	NA	NA	NA	336	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.010000	0.502488	-32(CCATATATAGGA,+,0.00)
mm_108630.1	chr12	85639451	85639651	+	1	NA	NA	NA	39533	NM_001205053	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.030000	0.368159	
mm_13691.1	chr2	117120827	117121027	+	1	NA	NA	NA	-144	NM_001277256	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.110000	0.676617	
mm_82335.1	chr9	9239016	9239216	-	1	NA	NA	NA	-103	NM_027823	71544	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0.125000	0.776119	
mm_158128.1	chrX	102644132	102644332	-	1	NA	NA	NA	14	NM_008832	18679	Mm.212889	NM_008832	ENSMUSG00000034055	Phka1	5330411D17|9830108K24Rik|Phka	phosphorylase kinase alpha 1	protein-coding	0.120000	0.751244	
mm_38035.1	chr4	133887653	133887853	-	1	NA	NA	NA	44	NM_001285505	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.150000	0.791045	
mm_157928.1	chrX	79671336	79671536	-	1	NA	NA	NA	-1	NM_028025	71967	Mm.379207	NM_028025	ENSMUSG00000046942	Mageb16	2410003J06Rik	melanoma antigen family B, 16	protein-coding	0.030000	0.547264	
mm_82548.1	chr9	20938007	20938207	-	1	NA	NA	NA	14516	NM_001199433	13433	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0.030000	0.577114	
mm_49598.1	chr6	30723397	30723597	+	1	NA	NA	NA	-10009	NM_001252293	17294	Mm.335639	NM_008590	ENSMUSG00000051855	Mest	AA408879|AI256745|Peg1	mesoderm specific transcript	protein-coding	0.015000	0.547264	
mm_104442.1	chr11	94976284	94976484	-	1	NA	NA	NA	-57	NM_009161	20391	Mm.18709	NM_009161	ENSMUSG00000001508	Sgca	50DAG|Asg	sarcoglycan, alpha (dystrophin-associated glycoprotein)	protein-coding	0.015000	0.542289	
mm_70337.1	chr8	4524623	4524823	+	1	NA	NA	NA	31318	NM_026058	67260	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0.000000	0.452736	
mm_111938.1	chr12	108893353	108893553	-	1	NA	NA	NA	-242	NM_011710	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.020000	0.532338	
mm_64854.1	chr7	13034652	13034852	-	1	NA	NA	NA	25	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.100000	0.636816	
mm_50685.1	chr6	51584228	51584428	+	1	NA	NA	NA	39805	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.035000	0.412935	
mm_103907.1	chr11	83578432	83578632	-	1	NA	NA	NA	104	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.005000	0.497512	
mm_91613.1	chr10	41518990	41519190	-	1	NA	NA	NA	-410	NM_016898	53599	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.090000	0.597015	
mm_36556.1	chr4	86857290	86857490	-	1	NA	NA	NA	-23	NM_009096	20104	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	0.090000	0.601990	
mm_145563.1	chr18	60812313	60812513	+	1	NA	NA	NA	337	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.015000	0.527363	
mm_11182.1	chr2	28840617	28840817	+	1	NA	NA	NA	311	NM_001033294	227674	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	0.105000	0.686567	
mm_171607.1	chr4	149436731	149436931	-	1	NA	NA	NA	-10200	NM_022022	63958	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0.015000	0.577114	
mm_17283.1	chr2	26138805	26139005	-	1	NA	NA	NA	638	NM_001256522	109299	Mm.389259	NM_001256521		C330006A16Rik	AI551216	RIKEN cDNA C330006A16 gene	protein-coding	0.020000	0.577114	
mm_41969.1	chr5	107359465	107359665	+	1	NA	NA	NA	28371	NM_054054	114642	Mm.182836	NM_054054	ENSMUSG00000029279	Brdt	7420412D09Rik|Brd6|Fsrg3	bromodomain, testis-specific	protein-coding	0.030000	0.611940	
mm_149388.1	chr19	11386517	11386717	+	1	NA	NA	NA	11129	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.005000	0.308458	
mm_129527.1	chr15	79265688	79265888	-	1	NA	NA	NA	-11040	NM_020516	57274	Mm.441697	NM_020516	ENSMUSG00000032988	Slc16a8	Mct3	solute carrier family 16 (monocarboxylic acid transporters), member 8	protein-coding	0.020000	0.557214	
mm_60118.1	chr7	35754473	35754673	+	1	NA	NA	NA	-119	NM_178704	233115	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0.085000	0.641791	
mm_152782.1	chr19	21383947	21384147	-	1	NA	NA	NA	88614	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.020000	0.482587	
mm_25441.1	chr3	108186270	108186470	+	1	NA	NA	NA	81	NM_001287093	229715	Mm.275752	NM_146137	ENSMUSG00000050947	Amigo1	Amigo|ali2	adhesion molecule with Ig like domain 1	protein-coding	0.200000	0.840796	
mm_75293.1	chr8	41054526	41054726	-	1	NA	NA	NA	170	NM_001005864	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.030000	0.427861	
mm_37117.1	chr4	116651341	116651541	-	1	NA	NA	NA	233	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.055000	0.621891	
mm_4550.1	chr1	177442289	177442489	+	1	NA	NA	NA	-2272	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.170000	0.865672	
mm_130024.1	chr15	88861921	88862121	-	1	NA	NA	NA	-173	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.095000	0.641791	
mm_34197.1	chr4	140714200	140714400	+	1	NA	NA	NA	12827	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.040000	0.611940	
mm_171702.1	chr4	72354485	72354685	+	1	NA	NA	NA	153341	NR_027923	68285	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.040000	0.457711	
mm_153222.1	chr19	34856032	34856232	-	1	NA	NA	NA	21785	NM_023792	75735	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	0.010000	0.482587	-33(CTATTTATACCG,+,0.00)
mm_69322.1	chr7	128461546	128461746	-	1	NA	NA	NA	27	NM_001347641	21843	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.060000	0.582090	
mm_122190.1	chr14	31653176	31653376	-	1	NA	NA	NA	12219	NM_025295	26363	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0.030000	0.517413	-35(TGCCTTTAAAAG,-,0.00),-34(GCCTTTAAAAGC,+,0.00),-34(GCCTTTAAAAGC,-,0.00),-33(CCTTTAAAAGCC,+,0.00)
mm_62863.1	chr7	114717339	114717539	+	1	NA	NA	NA	-1204	NM_054084	116903	Mm.273838	NM_054084	ENSMUSG00000030666	Calcb	CGRP2|Calc2	calcitonin-related polypeptide, beta	protein-coding	0.025000	0.522388	
mm_46113.1	chr5	92363136	92363336	-	1	NA	NA	NA	41	NM_019494	56066	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0.015000	0.552239	-86(GTCTATAAATGC,-,0.00)
mm_34462.1	chr4	148140590	148140790	+	1	NA	NA	NA	200	NM_027985	71890	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding	0.110000	0.696517	
mm_11893.1	chr2	49787618	49787818	+	1	NA	NA	NA	32	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.160000	0.810945	
mm_168348.1	chr1	112440125	112440325	-	1	NA	NA	NA	-575307	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0.075000	0.517413	-31(GGTTATAAAAGC,-,0.00)
mm_169539.1	chr15	100334802	100335002	+	1	NA	NA	NA	-27	NM_001081471	668178	Mm.425943	NM_001081471	ENSMUSG00000058057	Mettl7a3	ENSMUSG00000058057|Gm10035|Ubie3	methyltransferase like 7A3	protein-coding	0.035000	0.532338	
mm_128000.1	chr15	12739855	12740055	-	1	NA	NA	NA	84702	NM_029998	77877	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	0.075000	0.681592	
mm_88969.1	chr10	81409420	81409620	+	1	NA	NA	NA	6777	NR_106141	102465778		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.025000	0.592040	
mm_137108.1	chr17	21963493	21963693	+	1	NA	NA	NA	1034	NM_001025373	74670	Mm.26540	NM_001025373	ENSMUSG00000053347	Zfp943	4930432O21Rik	zinc finger prtoein 943	protein-coding	0.005000	0.373134	
mm_133837.1	chr16	96145320	96145520	+	1	NA	NA	NA	1	NM_207301	71446	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	0.120000	0.696517	
mm_5092.1	chr1	4608902	4609102	-	1	NA	NA	NA	-111648	NM_001289465	20671	Mm.279103	NM_011441	ENSMUSG00000025902	Sox17	-	SRY (sex determining region Y)-box 17	protein-coding	0.010000	0.482587	
mm_88645.1	chr10	79952208	79952408	+	1	NA	NA	NA	-7844	NM_175450	216156	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.035000	0.462687	
mm_81377.1	chr9	108855531	108855731	+	1	NA	NA	NA	1588	NM_134420	171429	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.010000	0.547264	
mm_167364.1	chr8	85060329	85060529	-	1	NA	NA	NA	31	NR_110582	320466	Mm.401371	NR_110581	ENSMUSG00000087026	A230103J11Rik	-	RIKEN cDNA A230103J11 gene	ncRNA	0.110000	0.666667	
mm_39304.1	chr5	7304040	7304240	+	1	NA	NA	NA	-24	NM_027603	70920	Mm.158494	NM_027603	ENSMUSG00000040514	4921511H03Rik	-	RIKEN cDNA 4921511H03 gene	protein-coding	0.000000	0.492537	
mm_21444.1	chr2	160364507	160364707	-	1	NA	NA	NA	2458	NM_010658	16658	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.020000	0.472637	
mm_60806.1	chr7	45639791	45639991	+	1	NA	NA	NA	-86	NM_172418	74490	Mm.107442	NM_172418	ENSMUSG00000042918	Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding	0.055000	0.626866	18(CCCTAGAAAGGG,-,0.00)
mm_64991.1	chr7	16917098	16917298	-	1	NA	NA	NA	6834	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.035000	0.587065	
mm_146942.1	chr18	32405363	32405563	-	1	NA	NA	NA	-27179	NR_045403	402767	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.010000	0.492537	
mm_19949.1	chr2	117305675	117305875	-	1	NA	NA	NA	37102	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.020000	0.422886	
mm_140866.1	chr17	23771469	23771669	-	1	NA	NA	NA	22	NM_153791	224613	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	0.130000	0.731343	
mm_82395.1	chr9	14740521	14740721	-	1	NA	NA	NA	112	NM_177905	330890	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	0.040000	0.572139	
mm_159051.1	chr1	189343676	189343876	-	1	NA	NA	NA	-69	NM_010607	16526	Mm.33304	NM_010607	ENSMUSG00000037624	Kcnk2	A430027H14Rik|AI848635|TREK-1	potassium channel, subfamily K, member 2	protein-coding	0.090000	0.731343	
mm_113761.1	chr13	44757830	44758030	+	1	NA	NA	NA	26659	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.005000	0.313433	
mm_7430.1	chr1	119837411	119837611	-	1	NA	NA	NA	-440	NM_019933	19258	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	0.090000	0.691542	
mm_172542.1	chr7	97595370	97595570	-	1	NA	NA	NA	15574	NM_001081267	233532	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	0.020000	0.398010	
mm_134542.1	chr16	19758110	19758310	-	1	NA	NA	NA	-2024	NM_001159408	108105	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	0.005000	0.422886	
mm_148328.1	chr18	84086291	84086491	-	1	NA	NA	NA	171	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.045000	0.537313	
mm_110022.1	chr12	16753215	16753415	-	1	NA	NA	NA	3924	NM_001252071	268527	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	0.030000	0.611940	81(CCCTTAATGGGG,+,0.00)
mm_94856.1	chr11	24076520	24076720	+	1	NA	NA	NA	-1436	NM_016707	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.085000	0.601990	-35(GTGCATTAAAGA,-,0.00)
mm_139892.1	chr17	70850608	70850808	+	1	NA	NA	NA	502	NM_009372	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.050000	0.572139	
mm_60168.1	chr7	40898838	40899038	+	1	NA	NA	NA	-340	NM_021387	58188	Mm.150675	NM_021387	ENSMUSG00000039257	Vstm2b	2900093B09Rik|AB030198	V-set and transmembrane domain containing 2B	protein-coding	0.080000	0.676617	
mm_146737.1	chr18	15403418	15403618	-	1	NA	NA	NA	240	NM_001317729	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.025000	0.477612	45(TCTTTTAAACCT,+,0.00)
mm_169075.1	chr13	30947644	30947844	-	1	NA	NA	NA	17	NM_153072	210554	Mm.450571	NM_153072	ENSMUSG00000076430	Hus1b	-	HUS1 checkpoint clamp component B	protein-coding	0.030000	0.616915	
mm_165540.1	chr2	180710187	180710387	+	1	NA	NA	NA	-41	NM_001289651	76425	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	0.155000	0.786070	
mm_157755.1	chrX	73494708	73494908	-	1	NA	NA	NA	-8278	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.015000	0.527363	
mm_36791.1	chr4	103114168	103114368	-	1	NA	NA	NA	31	NM_146254	242584	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	0.095000	0.701493	
mm_150330.1	chr19	34574878	34575078	+	1	NA	NA	NA	-8551	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.000000	0.412935	
mm_134198.1	chr16	11021436	11021636	-	1	NA	NA	NA	12638	NR_040518	100043147	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.000000	0.388060	69(CCTTTTAGATCA,+,0.00)
mm_84189.1	chr9	60449580	60449780	-	1	NA	NA	NA	61355	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.010000	0.577114	
mm_63680.1	chr7	130552839	130553039	+	1	NA	NA	NA	-5558	NM_001162855	67872	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0.020000	0.562189	
mm_18724.1	chr2	72948097	72948297	-	1	NA	NA	NA	31084	NM_001098425	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.000000	0.343284	
mm_75694.1	chr8	68211960	68212160	-	1	NA	NA	NA	-64468	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.005000	0.393035	
mm_107169.1	chr12	24708459	24708659	+	1	NA	NA	NA	305	NM_009104	20135	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0.070000	0.681592	
mm_84105.1	chr9	58312867	58313067	-	1	NA	NA	NA	245	NM_010729	16949	Mm.250492	NM_010729	ENSMUSG00000032334	Loxl1	Loxl	lysyl oxidase-like 1	protein-coding	0.065000	0.661692	
mm_14662.1	chr2	138256547	138256747	+	1	NA	NA	NA	63	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.120000	0.746269	
mm_88498.1	chr10	77837521	77837721	+	1	NA	NA	NA	1674	NM_001024709	544710	Mm.441890	NM_001024709		Krtap10-10	EG544710	keratin associated protein 10-10	protein-coding	0.020000	0.527363	
mm_116926.1	chr13	55570998	55571198	-	1	NA	NA	NA	22	NM_145382	212483	Mm.35661	NM_145382	ENSMUSG00000021495	Fam193b	IRIZIO|Kiaa1931	family with sequence similarity 193, member B	protein-coding	0.165000	0.791045	
mm_162379.1	chr1	72284191	72284391	-	1	NA	NA	NA	23	NM_023523	111175	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding	0.060000	0.601990	
mm_136573.1	chr17	3454146	3454346	+	1	NA	NA	NA	-28069	NM_001286758	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.030000	0.552239	
mm_3470.1	chr1	150104441	150104641	+	1	NA	NA	NA	4510	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.452736	
mm_84440.1	chr9	66124683	66124883	-	1	NA	NA	NA	103	NM_019727	56440	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	0.085000	0.646766	-28(CTGTCTATAAAG,-,0.00)
mm_41800.1	chr5	103753816	103754016	+	1	NA	NA	NA	-246	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.150000	0.761194	-50(GCCCTTAAAAGG,-,0.00),-49(CCCTTAAAAGGA,+,0.00),-48(CCTTAAAAGGAG,+,0.00)
mm_124682.1	chr15	6429704	6429904	+	1	NA	NA	NA	-15529	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.030000	0.492537	
mm_2465.1	chr1	105455872	105456072	+	1	NA	NA	NA	-99262	NM_001160368	320311	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	0.050000	0.472637	
mm_104171.1	chr11	87591458	87591658	-	1	NA	NA	NA	-659	NM_133215	170749	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0.050000	0.497512	
mm_136376.1	chr16	92825677	92825877	-	1	NA	NA	NA	297	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.010000	0.452736	
mm_150227.1	chr19	33970659	33970859	+	1	NA	NA	NA	9511	NM_026334	67717	Mm.329816	NM_026334	ENSMUSG00000024768	Lipf	2310051B21Rik|AV082900	lipase, gastric	protein-coding	0.020000	0.437811	
mm_152779.1	chr19	21174778	21174978	-	1	NA	NA	NA	70168	NR_126458	75354	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.015000	0.512438	
mm_157360.1	chrX	37102009	37102209	-	1	NA	NA	NA	8213	NM_026573	68134	Mm.271160	NM_026573	ENSMUSG00000036572	Upf3b	5730594O13Rik|AI317193|AW541158|RENT3B|UPF3X	UPF3 regulator of nonsense transcripts homolog B (yeast)	protein-coding	0.005000	0.338308	
mm_165871.1	chr4	40260366	40260566	+	1	NA	NA	NA	-9113	NR_045265	100504309	Mm.392019	NR_045265		Toporsos	2010003O02Rik	topoisomerase I binding, arginine/serine-rich, opposite strand	ncRNA	0.025000	0.472637	
mm_50182.1	chr6	41605433	41605633	+	1	NA	NA	NA	51	NM_007680	13848	Mm.271976	NM_007680	ENSMUSG00000029869	Ephb6	Cekl|Mep	Eph receptor B6	protein-coding	0.100000	0.726368	
mm_89992.1	chr10	112060120	112060320	+	1	NA	NA	NA	31	NM_027018	69286	Mm.47058	NM_027018	ENSMUSG00000020213	Glipr1l1	1700011E04Rik	GLI pathogenesis-related 1 like 1	protein-coding	0.015000	0.507463	
mm_18048.1	chr2	39132989	39133189	-	1	NA	NA	NA	29146	NR_033526	100042584	Mm.451696	NR_033526	ENSMUSG00000082315	Gm16523	A130054J05Rik	mitochondrial ribosomal protein L40 pseudogene	pseudo	0.000000	0.303483	
mm_66819.1	chr7	48456205	48456405	-	1	NA	NA	NA	37	NM_205810	233231	Mm.297430	NM_205810	ENSMUSG00000070547	Mrgprb1	MrgB1	MAS-related GPR, member B1	protein-coding	0.010000	0.417910	
mm_27265.1	chr3	38484748	38484948	-	1	NA	NA	NA	-32	NM_001167883	99696	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.115000	0.786070	
mm_164740.1	chr17	72912925	72913125	-	1	NA	NA	NA	-5280	NM_029999	77889	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.005000	0.517413	
mm_150706.1	chr19	42518713	42518913	+	1	NA	NA	NA	8	NM_177464	52013	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	0.110000	0.676617	
mm_82935.1	chr9	35210830	35211030	-	1	NA	NA	NA	125	NM_172291	235169	Mm.138512	NM_172291	ENSMUSG00000039048	Foxred1	BC024806|TEG-23|Tex23	FAD-dependent oxidoreductase domain containing 1	protein-coding	0.085000	0.641791	
mm_33717.1	chr4	134052591	134052791	+	1	NA	NA	NA	-15761	NM_001162970	230806	Mm.240080	NM_001162970	ENSMUSG00000012123	Aim1l	-	absent in melanoma 1-like	protein-coding	0.030000	0.587065	-65(GTCTATTTAAGG,-,0.00)
mm_165780.1	chr3	130647432	130647632	+	1	NA	NA	NA	29957	NM_027907	71760	Mm.29125	NM_027907	ENSMUSG00000019232	Etnppl	1300019H02Rik|AI195447|Agxt2l1	ethanolamine phosphate phospholyase	protein-coding	0.000000	0.442786	
mm_95547.1	chr11	52307533	52307733	+	1	NA	NA	NA	-24619	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.005000	0.582090	
mm_50839.1	chr6	54816779	54816979	+	1	NA	NA	NA	-37	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.180000	0.796020	
mm_49926.1	chr6	39381010	39381210	+	1	NA	NA	NA	-318	NM_011226	19331	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	0.030000	0.482587	
mm_13126.1	chr2	91710835	91711035	+	1	NA	NA	NA	-15	NM_178724	241547	Mm.130331	NM_178724	ENSMUSG00000027243	Harbi1	D230010M03Rik	harbinger transposase derived 1	protein-coding	0.105000	0.636816	
mm_113371.1	chr13	33003140	33003340	+	1	NA	NA	NA	-1301	NM_009256	20723	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0.010000	0.512438	
mm_25206.1	chr3	103809558	103809758	+	1	NA	NA	NA	141	NM_001163553	67489	Mm.197568	NM_026193	ENSMUSG00000032952	Ap4b1	1810038H16Rik|AV004952|Ap4b4	adaptor-related protein complex AP-4, beta 1	protein-coding	0.045000	0.601990	
mm_82983.1	chr9	36493202	36493402	-	1	NA	NA	NA	17664	NM_001128510	671003	Mm.475847	NM_001128510	ENSMUSG00000090710	Gm9513	Pate-P|Pate11	predicted gene 9513	protein-coding	0.000000	0.383085	
mm_81871.1	chr9	119063348	119063548	+	1	NA	NA	NA	10670	NM_001164567	22351	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	0.045000	0.597015	
mm_138893.1	chr17	43568055	43568255	+	1	NA	NA	NA	-296	NM_013737	27226	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.020000	0.447761	-54(TCATTAATAGCC,+,0.00)
mm_1666.1	chr1	74771799	74771999	+	1	NA	NA	NA	7	NM_009526	22420	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	0.100000	0.761194	
mm_69892.1	chr7	141637287	141637487	-	1	NA	NA	NA	16686	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.005000	0.472637	
mm_61832.1	chr7	88280487	88280687	+	1	NA	NA	NA	2502	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.010000	0.353234	
mm_60782.1	chr7	45565231	45565431	+	1	NA	NA	NA	-4822	NM_009737	12036	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.005000	0.378109	
mm_83785.1	chr9	52167281	52167481	-	1	NA	NA	NA	730	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.015000	0.417910	13(CCATTTAAAAAG,-,0.00)
mm_137523.1	chr17	27325284	27325484	+	1	NA	NA	NA	-3001	NR_106075	102466818		NR_106075	ENSMUSG00000099237	Mir7216	Gm27555|mmu-mir-7216	microRNA 7216	ncRNA	0.055000	0.582090	
mm_122792.1	chr14	54417724	54417924	-	1	NA	NA	NA	-122	NM_011405	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.045000	0.626866	
mm_21577.1	chr2	164237075	164237275	-	1	NA	NA	NA	1166	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.398010	
mm_170372.1	chr18	54699161	54699361	-	1	NA	NA	NA	87517	NR_045400	328957	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	0.050000	0.472637	
mm_23866.1	chr3	83026055	83026255	+	1	NA	NA	NA	2	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.020000	0.557214	
mm_140046.1	chr17	74499205	74499405	+	1	NA	NA	NA	9812	NM_026417	67864	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	0.015000	0.308458	
mm_105466.1	chr11	105291390	105291590	-	1	NA	NA	NA	-1156	NM_008626	17534	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0.000000	0.368159	
mm_97765.1	chr11	82035477	82035677	+	1	NA	NA	NA	0	NM_011333	20296	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.005000	0.587065	
mm_66782.1	chr7	46975808	46976008	-	1	NA	NA	NA	3	NR_015609	97402	Mm.22314	NR_015609	ENSMUSG00000110001	C86187	-	expressed sequence C86187	ncRNA	0.015000	0.432836	-79(ACCCTTTAAAGG,-,0.00),-78(CCCTTTAAAGGG,+,0.00),-78(CCCTTTAAAGGG,-,0.00),-77(CCTTTAAAGGGC,+,0.00),-76(CTTTAAAGGGCC,+,0.00)
mm_29727.1	chr3	125978545	125978745	-	1	NA	NA	NA	-40095	NM_011674	22239	Mm.306021	NM_011674	ENSMUSG00000032854	Ugt8a	AI850488|AW455908|Cgt|Ugt8|mCerGT	UDP galactosyltransferase 8A	protein-coding	0.010000	0.487562	-67(GCCTTTAAGGTG,+,0.00)
mm_92693.1	chr10	80668571	80668771	-	1	NA	NA	NA	7622	NM_021462	17347	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.030000	0.611940	
mm_78076.1	chr9	15627848	15628048	+	1	NA	NA	NA	-15	NM_181816	234964	Mm.32237	NM_181816	ENSMUSG00000039977	Ccdc67	4933401K09Rik|Deup1	coiled-coil domain containing 67	protein-coding	0.095000	0.736318	
mm_36316.1	chr4	70249343	70249543	-	1	NA	NA	NA	160992	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.070000	0.527363	
mm_132881.1	chr16	48790147	48790347	+	1	NA	NA	NA	-18291	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.010000	0.492537	
mm_44868.1	chr5	34500734	34500934	-	1	NA	NA	NA	13145	NM_139064	231130	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0.005000	0.412935	-7(TTTTTTAAAGCT,+,0.00)
mm_67429.1	chr7	80370722	80370922	-	1	NA	NA	NA	553	NM_172903	140481	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	0.065000	0.611940	
mm_15924.1	chr2	165066800	165067000	+	1	NA	NA	NA	11264	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.000000	0.457711	
mm_126005.1	chr15	76538790	76538990	+	1	NA	NA	NA	-53	NM_029643	52710	Mm.28597	NM_029643	ENSMUSG00000022560	Slc52a2	2010003P03Rik|D15Ertd747e|GPCR42|Gpr172b|PAR2|mRFT1	solute carrier protein 52, member 2	protein-coding	0.075000	0.636816	
mm_138259.1	chr17	34592121	34592321	+	1	NA	NA	NA	-250	NM_017463	18515	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	0.090000	0.751244	
mm_154567.1	chrX	6416848	6417048	+	1	NA	NA	NA	1206	NM_001313764	208431	Mm.23208	NM_001040459	ENSMUSG00000068270	Shroom4	D430043L16Rik|Gm724|Shrm4	shroom family member 4	protein-coding	0.000000	0.383085	
mm_86123.1	chr9	116175047	116175247	-	1	NA	NA	NA	216	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.115000	0.741294	
mm_120177.1	chr14	61172952	61173152	+	1	NA	NA	NA	34595	NM_172809	50720	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik|mKIAA0730	sacsin	protein-coding	0.115000	0.731343	
mm_98498.1	chr11	94951696	94951896	+	1	NA	NA	NA	15572	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.005000	0.293532	
mm_96955.1	chr11	70615739	70615939	+	1	NA	NA	NA	-55	NM_001145537	668433	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.030000	0.502488	
mm_134627.1	chr16	21650071	21650271	-	1	NA	NA	NA	44494	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.000000	0.338308	
mm_61887.1	chr7	89670935	89671135	+	1	NA	NA	NA	38217	NM_181407	109264	Mm.334011	NM_181407	ENSMUSG00000030621	Me3	1700020C08Rik|B230207H15Rik	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding	0.005000	0.398010	
mm_131562.1	chr16	18127559	18127759	+	1	NA	NA	NA	-47	NM_022982	65079	Mm.40149	NM_022982	ENSMUSG00000043811	Rtn4r	NOGOR|NgR|NgR1	reticulon 4 receptor	protein-coding	0.155000	0.766169	
mm_169664.1	chr15	60397996	60398196	+	1	NA	NA	NA	-381478	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.025000	0.492537	
mm_53426.1	chr6	134035929	134036129	+	1	NA	NA	NA	329	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.075000	0.592040	
mm_40975.1	chr5	77015939	77016139	+	1	NA	NA	NA	16	NM_027970	71868	Mm.151092	NM_027970	ENSMUSG00000029248	Thegl	1700023E05Rik	theg spermatid protein like	protein-coding	0.115000	0.716418	
mm_123991.1	chr14	75761055	75761255	-	1	NA	NA	NA	-6662	NM_177381	338337	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0.010000	0.373134	
mm_154968.1	chrX	37126720	37126920	+	1	NA	NA	NA	57	NM_025937	67050	Mm.55422	NM_025937	ENSMUSG00000016409	Nkap	2610020O08Rik|AA987160|AI849147|AL024236	NFKB activating protein	protein-coding	0.040000	0.502488	
mm_51365.1	chr6	72636230	72636430	+	1	NA	NA	NA	6499	NR_040421	100038714	Mm.321330	NR_040421		Gm15401	ENSMUSG00000072999|OTTMUSG00000021199	predicted gene 15401	ncRNA	0.020000	0.572139	
mm_35229.1	chr4	19705061	19705261	-	1	NA	NA	NA	3843	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.005000	0.363184	
mm_159562.1	chr4	109016686	109016886	+	1	NA	NA	NA	-869	NR_030432	791075		NR_030432	ENSMUSG00000076444	Mir761	Mirn761|mir-761|mmu-mir-761	microRNA 761	ncRNA	0.005000	0.383085	
mm_24619.1	chr3	93511186	93511386	+	1	NA	NA	NA	-9210	NM_016740	20195	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0.000000	0.482587	
mm_22709.1	chr3	19187270	19187470	+	1	NA	NA	NA	41	NM_001253391	67472	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.020000	0.517413	
mm_130738.1	chr15	101253692	101253892	-	1	NA	NA	NA	-13054	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.010000	0.552239	
mm_112038.1	chr12	111670396	111670596	-	1	NA	NA	NA	1842	NM_021273	12709	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.040000	0.611940	
mm_101762.1	chr11	43598615	43598815	-	1	NA	NA	NA	2847	NM_008375	16204	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0.015000	0.507463	
mm_1844.1	chr1	82913226	82913426	+	1	NA	NA	NA	73866	NM_001347077	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.010000	0.532338	
mm_53118.1	chr6	125096993	125097193	+	1	NA	NA	NA	69	NR_106012	102466272		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	0.060000	0.721393	
mm_150471.1	chr19	38481082	38481282	+	1	NA	NA	NA	-43015	NM_019588	74055	Mm.34031	NM_019588	ENSMUSG00000024998	Plce1	4933403A21Rik|PLCepsilon|Plce|mKIAA1516	phospholipase C, epsilon 1	protein-coding	0.150000	0.791045	
mm_130202.1	chr15	95527866	95528066	-	1	NA	NA	NA	286	NM_001289653	54003	Mm.3959	NM_016743	ENSMUSG00000022454	Nell2	A330108N19Rik|R75516|mel91	NEL-like 2	protein-coding	0.115000	0.661692	
mm_85296.1	chr9	100481145	100481345	-	1	NA	NA	NA	5228	NM_001033543	213208	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.010000	0.343284	
mm_136078.1	chr16	84834897	84835097	-	1	NA	NA	NA	1	NM_001302216	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.070000	0.582090	
mm_168524.1	chr11	59505590	59505790	+	1	NA	NA	NA	37	NR_015585	74476	Mm.440257	NR_015585	ENSMUSG00000072893	4933439C10Rik	2610028M21Rik	RIKEN cDNA 4933439C10 gene	ncRNA	0.030000	0.552239	
mm_151068.1	chr19	47510538	47510738	+	1	NA	NA	NA	-2344	NR_045322	100503104	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0.025000	0.577114	
mm_106060.1	chr11	116130958	116131158	-	1	NA	NA	NA	70	NM_178802	338364	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0.055000	0.606965	13(GCCCCTTTAAGA,-,0.00),15(CCCTTTAAGAGA,-,0.00),16(CCTTTAAGAGAT,+,0.00)
mm_147247.1	chr18	38381086	38381286	-	1	NA	NA	NA	-37789	NM_022996	65113	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.010000	0.477612	
mm_71569.1	chr8	54077121	54077321	+	1	NA	NA	NA	-311	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding	0.155000	0.800995	
mm_20424.1	chr2	129304620	129304820	-	1	NA	NA	NA	5252	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.020000	0.472637	
mm_157035.1	chrX	7947697	7947897	-	1	NA	NA	NA	92	NM_001130416	15185	Mm.29854	NM_010413	ENSMUSG00000031161	Hdac6	Hd6|Hdac5|Sfc6|mHDA2	histone deacetylase 6	protein-coding	0.070000	0.641791	
mm_109610.1	chr12	112722708	112722908	+	1	NA	NA	NA	634	NM_001024602	217882	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0.060000	0.696517	
mm_166853.1	chr7	19696838	19697038	+	1	NA	NA	NA	1460	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.085000	0.656716	
mm_151733.1	chr19	4879128	4879328	-	1	NA	NA	NA	538	NM_001168517	70605	Mm.36885	NM_027476	ENSMUSG00000006463	Zdhhc24	5730496N17Rik|Leng4	zinc finger, DHHC domain containing 24	protein-coding	0.030000	0.432836	54(GGCTCTAAAGGA,-,0.00)
mm_23695.1	chr3	68693599	68693799	+	1	NA	NA	NA	2275	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.010000	0.393035	
mm_143362.1	chr17	67346380	67346580	-	1	NA	NA	NA	7979	NM_008984	19274	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.015000	0.412935	-89(TCCTTTAAAAGA,-,0.00),-88(CCTTTAAAAGAA,+,0.00),-40(TCTTTTAAACAC,+,0.00),82(GTGTTTTTAAGC,-,0.00)
mm_158504.1	chrX	142390478	142390678	-	1	NA	NA	NA	-43	NM_019477	50790	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	0.145000	0.751244	
mm_79596.1	chr9	58455071	58455271	+	1	NA	NA	NA	-2	NR_040736	74879	Mm.416924	NR_040736	ENSMUSG00000097651	4930461G14Rik	-	RIKEN cDNA 4930461G14 gene	ncRNA	0.005000	0.527363	
mm_31016.1	chr4	40722436	40722636	+	1	NA	NA	NA	68	NM_008298	15502	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0.130000	0.721393	
mm_149017.1	chr19	8741388	8741588	+	1	NA	NA	NA	64	NM_001167799	56389	Mm.153061	NM_019829	ENSMUSG00000010110	Stx5a	0610031F24Rik|D19Ertd627e|Stx5	syntaxin 5A	protein-coding	0.070000	0.567164	
mm_146981.1	chr18	33832757	33832957	-	1	NA	NA	NA	37965	NR_038151	69749	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.020000	0.542289	
mm_96718.1	chr11	69665519	69665719	+	1	NA	NA	NA	551	NM_001291058	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.020000	0.552239	
mm_88423.1	chr10	77225613	77225813	+	1	NA	NA	NA	33510	NR_026944	100169878	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	ENSMUSG00000078444	predicted gene 10941	ncRNA	0.020000	0.507463	
mm_33993.1	chr4	137903161	137903361	+	1	NA	NA	NA	41024	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.015000	0.542289	
mm_112378.1	chr12	119236772	119236972	-	1	NA	NA	NA	1404	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.005000	0.268657	
mm_94298.1	chr11	4096779	4096979	+	1	NA	NA	NA	-1448	NM_026443	67900	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0.065000	0.522388	
mm_141407.1	chr17	29368748	29368948	-	1	NA	NA	NA	7934	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.020000	0.587065	-35(CACTATAAAAGG,-,0.00)
mm_144743.1	chr18	35584653	35584853	+	1	NA	NA	NA	-13914	NM_026420	67869	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	0.010000	0.452736	
mm_53028.1	chr6	124480426	124480626	+	1	NA	NA	NA	-12587	NM_181344	232371	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0.010000	0.393035	
mm_138787.1	chr17	37270955	37271155	+	1	NA	NA	NA	821	NM_013819	14991	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	0.015000	0.552239	
mm_122739.1	chr14	54123507	54123707	-	1	NA	NA	NA	130322	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.497512	
mm_24561.1	chr3	93443572	93443772	+	1	NA	NA	NA	1342	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.070000	0.592040	
mm_63259.1	chr7	126663820	126664020	+	1	NA	NA	NA	12437	NM_133670	20887	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|Stp|Stp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	0.025000	0.512438	
mm_43251.1	chr5	130188324	130188524	+	1	NA	NA	NA	1244	NM_019983	56715	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.035000	0.462687	
mm_168158.1	chr10	4253839	4254039	+	1	NA	NA	NA	-12390	NM_031185	83397	Mm.27481	NM_031185	ENSMUSG00000038587	Akap12	AI317366|SSeCKS|Srcs5|Tsga12	A kinase (PRKA) anchor protein (gravin) 12	protein-coding	0.010000	0.626866	
mm_86815.1	chr10	20534063	20534263	+	1	NA	NA	NA	14165	NM_001347366	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.005000	0.422886	
mm_12047.1	chr2	59160790	59160990	+	1	NA	NA	NA	40	NM_175464	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.135000	0.786070	
mm_170339.1	chr18	46914321	46914521	-	1	NA	NA	NA	-7394	NM_001033446	381142	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	0.020000	0.388060	
mm_78817.1	chr9	44084851	44085051	+	1	NA	NA	NA	31	NM_198091	53376	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.145000	0.766169	
mm_53021.1	chr6	124272433	124272633	+	1	NA	NA	NA	-32118	NM_001170395	93671	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.010000	0.393035	-35(TGGTATAAAAGG,-,0.00)
mm_132107.1	chr16	31450104	31450304	+	1	NA	NA	NA	21451	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.005000	0.512438	
mm_54824.1	chr6	42373146	42373346	-	1	NA	NA	NA	22	NM_023580	13835	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	0.085000	0.766169	
mm_128259.1	chr15	36771219	36771419	-	1	NA	NA	NA	19613	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.005000	0.442786	
mm_53558.1	chr6	136943548	136943748	+	1	NA	NA	NA	-1749	NM_001301309	11857	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	0.000000	0.542289	
mm_94356.1	chr11	4947392	4947592	+	1	NA	NA	NA	-29	NM_001243043	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.160000	0.766169	
mm_20406.1	chr2	129299758	129299958	-	1	NA	NA	NA	2488	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.010000	0.417910	
mm_171831.1	chr5	146231099	146231299	+	1	NA	NA	NA	-476	NM_153599	264064	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.105000	0.671642	
mm_168750.1	chr12	115803028	115803228	-	1	NA	NA	NA	-107334	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.000000	0.417910	
mm_53417.1	chr6	133699869	133700069	+	1	NA	NA	NA	67439	NM_001177652	545886	Mm.449716	NM_001177652	ENSMUSG00000108106	Gm5886	EG545886|smarp	predicted gene 5886	protein-coding	0.005000	0.457711	-34(GCTTTTATAAAG,+,0.00),-34(GCTTTTATAAAG,-,0.00),-32(TTTTATAAAGAG,+,0.00)
mm_37479.1	chr4	123565531	123565731	-	1	NA	NA	NA	-50789	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.025000	0.522388	-43(TTCTATTTAGGG,-,0.00)
mm_75281.1	chr8	41016499	41016699	-	1	NA	NA	NA	-869	NR_015457	78849	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	0.030000	0.567164	
mm_2878.1	chr1	131827962	131828162	+	1	NA	NA	NA	50	NM_173865	98396	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	0.060000	0.631841	
mm_76502.1	chr8	86786641	86786841	-	1	NA	NA	NA	-40735	NM_009172	20437	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	seven in absentia 1A	protein-coding	0.015000	0.537313	-35(GCCTATAAATAA,-,0.00)
mm_65224.1	chr7	19700352	19700552	-	1	NA	NA	NA	-1264	NM_009696	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.015000	0.562189	
mm_181.1	chr1	14864903	14865103	+	1	NA	NA	NA	53859	NM_177781	277328	Mm.186329	NM_177781	ENSMUSG00000032769	Trpa1	Anktm1|TRPA1b	transient receptor potential cation channel, subfamily A, member 1	protein-coding	0.045000	0.507463	
mm_153834.1	chr19	46326100	46326300	-	1	NA	NA	NA	666	NM_001347454	73728	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.050000	0.661692	
mm_80960.1	chr9	103050149	103050349	+	1	NA	NA	NA	41760	NM_033314	24059	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	0.055000	0.606965	
mm_140648.1	chr17	12691884	12692084	-	1	NA	NA	NA	-16146	NM_009202	20517	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.020000	0.472637	
mm_105707.1	chr11	108273687	108273887	-	1	NA	NA	NA	70101	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.025000	0.462687	
mm_162249.1	chrX	162902071	162902271	+	1	NA	NA	NA	0	NR_033143	55936	Mm.2065	NM_018737	ENSMUSG00000031360	Ctps2	A830031M15Rik|AI326475|Ctpsh	cytidine 5'-triphosphate synthase 2	protein-coding	0.045000	0.601990	
mm_139936.1	chr17	71101453	71101653	+	1	NA	NA	NA	81996	NM_001083934	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.005000	0.388060	
mm_78059.1	chr9	14903100	14903300	+	1	NA	NA	NA	751	NM_176807	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.005000	0.532338	
mm_130814.1	chr15	101742824	101743024	-	1	NA	NA	NA	173	NM_019956	56735	Mm.358677	NM_019956	ENSMUSG00000051879	Krt71	AA589543|Ca|Cal4|Cu|Krt2-6g|mK6irs|mK6irs1	keratin 71	protein-coding	0.035000	0.606965	
mm_145841.1	chr18	65447521	65447721	+	1	NA	NA	NA	16624	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.427861	
mm_84324.1	chr9	64014934	64015134	-	1	NA	NA	NA	7025	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.005000	0.447761	
mm_128166.1	chr15	34082484	34082684	-	1	NA	NA	NA	-135	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.070000	0.636816	
mm_83560.1	chr9	46243229	46243429	-	1	NA	NA	NA	2485	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.005000	0.611940	
mm_24319.1	chr3	89430440	89430640	+	1	NA	NA	NA	-200	NM_001293767	68911	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	0.105000	0.736318	
mm_92244.1	chr10	70288061	70288261	-	1	NA	NA	NA	42885	NM_025807	66859	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.025000	0.527363	
mm_164421.1	chr16	43973856	43974056	-	1	NA	NA	NA	5094	NM_001007460	332175	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	0.025000	0.542289	
mm_105034.1	chr11	100527806	100528006	-	1	NA	NA	NA	94	NM_134037	104112	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	0.060000	0.651741	
mm_61739.1	chr7	82175093	82175293	+	1	NA	NA	NA	-84715	NM_001277955	20408	Mm.736	NM_017400	ENSMUSG00000030638	Sh3gl3	EEN-B2|SH3P13|Sh3d2c|Sh3d2c2	SH3-domain GRB2-like 3	protein-coding	0.105000	0.686567	
mm_152702.1	chr19	17339452	17339652	-	1	NA	NA	NA	-47	NM_001136484	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.010000	0.532338	
mm_97445.1	chr11	78188662	78188862	+	1	NA	NA	NA	14	NM_033475	19376	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	0.115000	0.716418	
mm_5610.1	chr1	39629353	39629553	-	1	NA	NA	NA	21729	NM_170597	263764	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0.000000	0.313433	
mm_51567.1	chr6	83711160	83711360	+	1	NA	NA	NA	-4	NM_011912	24113	Mm.307165	NM_011912	ENSMUSG00000034777	Vax2	Dres93	ventral anterior homeobox 2	protein-coding	0.090000	0.756219	
mm_159919.1	chr6	52212803	52213003	-	1	NA	NA	NA	164	NM_010452	15400	Mm.71533	NM_010452	ENSMUSG00000079560	Hoxa3	Hox-1.5|Mo-10	homeobox A3	protein-coding	0.025000	0.507463	
mm_21516.1	chr2	163627931	163628131	-	1	NA	NA	NA	-16819	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.015000	0.432836	
mm_43187.1	chr5	128600739	128600939	+	1	NA	NA	NA	-152	NR_015517	319616	Mm.387738	NR_015517	ENSMUSG00000072591	5930412G12Rik	-	RIKEN cDNA 5930412G12 gene	ncRNA	0.085000	0.651741	
mm_66125.1	chr7	31053754	31053954	-	1	NA	NA	NA	999	NM_052991	56188	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	0.020000	0.512438	
mm_29843.1	chr3	129831215	129831415	-	1	NA	NA	NA	81	NM_026578	68147	Mm.24873	NM_026578	ENSMUSG00000028010	Gar1	AA409823|AI326794|C430047J18Rik|Nola1	GAR1 ribonucleoprotein	protein-coding	0.085000	0.626866	
mm_70673.1	chr8	14911573	14911773	+	1	NA	NA	NA	10	NM_001037736	234094	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	0.150000	0.761194	
mm_142814.1	chr17	51739587	51739787	-	1	NA	NA	NA	72367	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.015000	0.457711	
mm_152179.1	chr19	7382946	7383146	-	1	NA	NA	NA	-20	NM_001167831	68229	Mm.34766	NM_001033139	ENSMUSG00000024970	AI846148	1700105P06Rik	expressed sequence AI846148	protein-coding	0.095000	0.706468	19(CTCCATAAAAGG,-,0.00)
mm_53533.1	chr6	136587472	136587672	+	1	NA	NA	NA	68721	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.035000	0.522388	
mm_115213.1	chr13	109441022	109441222	+	1	NA	NA	NA	116378	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.040000	0.611940	
mm_45748.1	chr5	86676215	86676415	-	1	NA	NA	NA	-17	NM_177024	319875	Mm.253994	NM_177024	ENSMUSG00000035861	Tmprss11b	9930019B18Rik|Tmprss11bnl	transmembrane protease, serine 11B	protein-coding	0.015000	0.407960	
mm_156751.1	chrX	160390488	160390688	+	1	NA	NA	NA	-102	NM_001079847	237175	Mm.213016	NM_178712	ENSMUSG00000031298	Adgrg2	AW212196|B830041D06Rik|Gpr64|Me6	adhesion G protein-coupled receptor G2	protein-coding	0.115000	0.771144	
mm_132537.1	chr16	37868649	37868849	+	1	NA	NA	NA	349	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.130000	0.751244	
mm_48700.1	chr5	146963674	146963874	-	1	NA	NA	NA	23	NM_001256101	76366	Mm.486234	NM_029581	ENSMUSG00000016510	Mtif3	2810012L14Rik|AI414549	mitochondrial translational initiation factor 3	protein-coding	0.075000	0.626866	-59(CTCCCTTTAAGG,-,0.00),-58(TCCCTTTAAGGG,-,0.00),-57(CCCTTTAAGGGA,+,0.00),-56(CCTTTAAGGGAC,+,0.00)
mm_46417.1	chr5	104113328	104113528	-	1	NA	NA	NA	660	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding	0.020000	0.517413	
mm_144198.1	chr18	7916022	7916222	+	1	NA	NA	NA	46925	NM_153085	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.015000	0.442786	
mm_308.1	chr1	24099956	24100156	+	1	NA	NA	NA	285	NM_026604	68187	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	0.125000	0.741294	
mm_127596.1	chr15	102394000	102394200	+	1	NA	NA	NA	-12216	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.005000	0.457711	-92(CCCTTTTAATGA,-,0.00)
mm_142082.1	chr17	35703946	35704146	-	1	NA	NA	NA	93	NM_007584	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.035000	0.666667	
mm_54380.1	chr6	31211057	31211257	-	1	NA	NA	NA	7317	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.005000	0.452736	
mm_24673.1	chr3	94787559	94787759	+	1	NA	NA	NA	-1144	NM_001037711	70737	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	0.015000	0.577114	
mm_14787.1	chr2	145860261	145860461	+	1	NA	NA	NA	-42880	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.040000	0.582090	-34(CGCTATTAATAG,-,0.00),-32(CTATTAATAGTC,+,0.00)
mm_153963.1	chr19	47837169	47837369	-	1	NA	NA	NA	92	NM_027559	100048534	Mm.29457	NM_027559	ENSMUSG00000044948	Cfap43	4632415N18Rik|4930428C11Rik|4930463G05Rik|AI429486|D19Ertd652e|Wdr96	cilia and flagella associated protein 43	protein-coding	0.085000	0.696517	
mm_173200.1	chrX	67474385	67474585	+	1	NA	NA	NA	219077	NM_001126317	382217	Mm.422933	NM_001126317	ENSMUSG00000079578	Gm1140	-	predicted gene 1140	protein-coding	0.015000	0.472637	
mm_113234.1	chr13	27247762	27247962	+	1	NA	NA	NA	5432	NM_008865	18776	Mm.37203	NM_008865	ENSMUSG00000038891	Prl3b1	Csh2|Ghd8|PL|Pl-2|Pl2|mPL-II|mplII	prolactin family 3, subfamily b, member 1	protein-coding	0.005000	0.437811	
mm_134732.1	chr16	22899016	22899216	-	1	NA	NA	NA	-4730	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.015000	0.547264	
mm_106267.1	chr11	117969191	117969391	-	1	NA	NA	NA	75	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.100000	0.676617	
mm_131239.1	chr16	10488133	10488333	+	1	NA	NA	NA	55	NM_007575	12265	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.020000	0.522388	
mm_58502.1	chr7	3712504	3712704	+	1	NA	NA	NA	7778	NM_011095	18733	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	0.015000	0.477612	
mm_73630.1	chr8	110721354	110721554	+	1	NA	NA	NA	-22	NM_198625	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.160000	0.805970	
mm_156500.1	chrX	144455820	144456020	+	1	NA	NA	NA	-662	NM_001195579	100503240	Mm.387258	NM_001195579	ENSMUSG00000072934	Trpc5os	ENSMUSG00000072934|Gm15070|OTTMUSG00000018931	transient receptor potential cation channel, subfamily C, member 5, opposite strand	protein-coding	0.005000	0.427861	
mm_19123.1	chr2	80128868	80129068	-	1	NA	NA	NA	3	NM_016744	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.035000	0.512438	
mm_88173.1	chr10	69787297	69787497	+	1	NA	NA	NA	-138135	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.015000	0.472637	
mm_123056.1	chr14	55643711	55643911	-	1	NA	NA	NA	-5	NM_028780	74140	Mm.132857	NM_028780	ENSMUSG00000002320	Tm9sf1	1200014D02Rik|AI893436|MP70	transmembrane 9 superfamily member 1	protein-coding	0.090000	0.691542	
mm_133532.1	chr16	91043392	91043592	+	1	NA	NA	NA	887	NM_026110	67367	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.035000	0.467662	
mm_29940.1	chr3	132791132	132791332	-	1	NA	NA	NA	87364	NR_102297	101243624	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	0.005000	0.412935	
mm_173262.1	chrX	94882701	94882901	+	1	NA	NA	NA	-84512	NR_003292	668171	Mm.426134	NR_003292		Zxda	4933406P09Rik|AW413531	zinc finger, X-linked, duplicated A	pseudo	0.010000	0.338308	-70(GTTTTTAAAAAG,-,0.00),23(GTTTTTTAAAGG,-,0.00),24(TTTTTTAAAGGA,+,0.00)
mm_106608.1	chr11	120784157	120784357	-	1	NA	NA	NA	-15	NM_001346709	209318	Mm.30195	NM_145370	ENSMUSG00000025156	Gps1	Cops1|Csn1|R75577|Sgn1	G protein pathway suppressor 1	protein-coding	0.135000	0.726368	33(CACTCTTAAAGG,-,0.00),36(TCTTAAAGGGGC,+,0.00)
mm_165508.1	chr2	169949370	169949570	+	1	NA	NA	NA	13717	NR_131974	446211	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0.040000	0.552239	
mm_79335.1	chr9	53341176	53341376	+	1	NA	NA	NA	39606	NM_176846	320051	Mm.277540	NM_176846	ENSMUSG00000034584	Exph5	AC079869.22gm5|B130009M24Rik|E030050P12|Kiaa0624|Slac2b|slac2-b	exophilin 5	protein-coding	0.035000	0.562189	-94(CCTCTTAAGGTG,+,0.00)
mm_43877.1	chr5	143732538	143732738	+	1	NA	NA	NA	-358	NM_029749	76800	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0.075000	0.686567	
mm_73076.1	chr8	94460373	94460573	+	1	NA	NA	NA	-12290	NM_001033207	434341	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	0.005000	0.417910	
mm_135449.1	chr16	45693635	45693835	-	1	NA	NA	NA	-77	NM_172455	208171	Mm.186306	NM_172455	ENSMUSG00000033177	Tmprss7	B230219I23Rik|Gm1748	transmembrane serine protease 7	protein-coding	0.035000	0.497512	
mm_42617.1	chr5	118027745	118027945	+	1	NA	NA	NA	21	NM_021344	57816	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	0.160000	0.796020	-50(CGCTATAAGAGG,-,0.00)
mm_111659.1	chr12	103242046	103242246	-	1	NA	NA	NA	0	NM_133364	170952	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	0.085000	0.711443	-34(GGCTTTAAATGG,-,0.00),-32(CTTTAAATGGGG,+,0.00)
mm_27673.1	chr3	65639191	65639391	-	1	NA	NA	NA	-19997	NR_106200	102465905		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	0.030000	0.427861	
mm_2858.1	chr1	131688649	131688849	+	1	NA	NA	NA	54	NM_001311096	226421	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0.020000	0.522388	
mm_42578.1	chr5	117256707	117256907	+	1	NA	NA	NA	30757	NM_018858	23980	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	0.025000	0.532338	
mm_85130.1	chr9	95606565	95606765	-	1	NA	NA	NA	-30963	NM_029620	76477	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.010000	0.512438	
mm_53873.1	chr6	149408906	149409106	+	1	NA	NA	NA	22	NM_009753	12121	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	bicaudal D homolog 1 (Drosophila)	protein-coding	0.050000	0.646766	
mm_82775.1	chr9	27029896	27030096	-	1	NA	NA	NA	98	NM_178027	69091	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	0.130000	0.716418	
mm_82673.1	chr9	22131550	22131750	-	1	NA	NA	NA	215	NM_001102404	11433	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.045000	0.631841	
mm_106765.1	chr12	4592715	4592915	+	1	NA	NA	NA	-193	NM_001198969	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.065000	0.656716	
mm_31726.1	chr4	62879599	62879799	+	1	NA	NA	NA	-85875	NM_028326	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.015000	0.482587	
mm_80368.1	chr9	75338049	75338249	+	1	NA	NA	NA	-9609	NM_013479	12049	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	0.020000	0.462687	
mm_164841.1	chr18	42196645	42196845	-	1	NA	NA	NA	-36	NM_027072	69401	Mm.34841	NM_027072	ENSMUSG00000059455	Plac8l1	1700009N18Rik|1700015M15Rik	PLAC8-like 1	protein-coding	0.000000	0.422886	-51(GTCTTTAAAAAA,-,0.00),17(CTGTTTAAAGGC,-,0.00)
mm_39977.1	chr5	32353506	32353706	+	1	NA	NA	NA	26	NM_172147	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0.010000	0.492537	
mm_143813.1	chr17	83777887	83778087	-	1	NA	NA	NA	68803	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.025000	0.517413	
mm_89075.1	chr10	83094528	83094728	+	1	NA	NA	NA	109131	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.015000	0.343284	
mm_19900.1	chr2	114146884	114147084	-	1	NA	NA	NA	3586	NR_105968	102465982		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	0.030000	0.537313	
mm_27184.1	chr3	34649663	34649863	-	1	NA	NA	NA	-232	NM_011443	20674	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0.090000	0.661692	
mm_9022.1	chr1	166238603	166238803	-	1	NA	NA	NA	41	NM_175296	98558	Mm.26189	NM_175296	ENSMUSG00000040629	Mael	4933405K18Rik|AU019877	maelstrom spermatogenic transposon silencer	protein-coding	0.110000	0.666667	
mm_59119.1	chr7	19851935	19852135	+	1	NA	NA	NA	32	NM_001270489	100502736	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0.030000	0.606965	
mm_52371.1	chr6	113065319	113065519	+	1	NA	NA	NA	11825	NR_027010	14910	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	0.010000	0.457711	
mm_31018.1	chr4	40722924	40723124	+	1	NA	NA	NA	94	NM_001164672	15502	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0.075000	0.691542	
mm_113538.1	chr13	37856774	37856974	+	1	NA	NA	NA	29481	NM_001039188	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.015000	0.393035	
mm_28930.1	chr3	98859687	98859887	-	1	NA	NA	NA	7	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.010000	0.417910	
mm_103181.1	chr11	70489761	70489961	-	1	NA	NA	NA	-15413	NM_029360	75604	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.025000	0.487562	
mm_90649.1	chr10	128746366	128746566	+	1	NA	NA	NA	-1413	NM_030100	78428	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	0.005000	0.527363	
mm_133798.1	chr16	95293006	95293206	+	1	NA	NA	NA	35548	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.045000	0.567164	
mm_39232.1	chr4	156254421	156254621	-	1	NA	NA	NA	817	NM_001110516	231004	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	0.050000	0.587065	
mm_100692.1	chr11	3529474	3529674	-	1	NA	NA	NA	9718	NM_013870	29856	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.015000	0.592040	
mm_139738.1	chr17	59424620	59424820	+	1	NA	NA	NA	-411398	NM_026497	67993	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.000000	0.378109	
mm_50096.1	chr6	41532927	41533127	+	1	NA	NA	NA	11251	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.015000	0.507463	
mm_47580.1	chr5	124556990	124557190	-	1	NA	NA	NA	4226	NM_026409	67848	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	0.020000	0.626866	
mm_118718.1	chr14	22202117	22202317	+	1	NA	NA	NA	182505	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.000000	0.447761	
mm_141034.1	chr17	25273317	25273517	-	1	NA	NA	NA	14	NM_001177610	22196	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|F830028O17Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	0.150000	0.756219	
mm_44344.1	chr5	17782558	17782758	-	1	NA	NA	NA	53238	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.338308	56(CTCTTTAAAAAA,-,0.00)
mm_125534.1	chr15	58002013	58002213	+	1	NA	NA	NA	16210	NM_173862	239463	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.030000	0.587065	
mm_80522.1	chr9	80067059	80067259	+	1	NA	NA	NA	256	NM_146003	215351	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.140000	0.741294	
mm_51624.1	chr6	85451395	85451595	+	1	NA	NA	NA	-10	NM_007638	12468	Mm.289900	NM_007638	ENSMUSG00000030007	Cct7	AA408524|AL022769|Ccth|Cctz	chaperonin containing Tcp1, subunit 7 (eta)	protein-coding	0.130000	0.701493	-30(CCTTATAGACGC,+,0.00)
mm_35937.1	chr4	53033024	53033224	-	1	NA	NA	NA	21244	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.010000	0.497512	
mm_103421.1	chr11	75594652	75594852	-	1	NA	NA	NA	5479	NR_110477	654359	Mm.439961	NR_110477		Gm12338	OTTMUSG00000006216	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.020000	0.527363	
mm_84061.1	chr9	58199645	58199845	-	1	NA	NA	NA	1970	NM_001161535	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.055000	0.572139	
mm_129689.1	chr15	81514171	81514371	-	1	NA	NA	NA	47955	NM_019712	56438	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.045000	0.587065	
mm_115791.1	chr13	19338650	19338850	-	1	NA	NA	NA	57063	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.368159	
mm_72002.1	chr8	70673296	70673496	+	1	NA	NA	NA	165	NM_015816	50783	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.110000	0.651741	
mm_3280.1	chr1	136624841	136625041	+	1	NA	NA	NA	40	NM_001160251	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.125000	0.661692	
mm_143442.1	chr17	70853410	70853610	-	1	NA	NA	NA	22	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.065000	0.577114	
mm_49775.1	chr6	34907431	34907631	+	1	NA	NA	NA	3300	NM_001013366	101240	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.000000	0.532338	
mm_45694.1	chr5	82123270	82123470	-	1	NA	NA	NA	1343	NR_138557	67327	Mm.87058	NR_138557		1700031L13Rik	-	RIKEN cDNA 1700031L13 gene	ncRNA	0.000000	0.427861	
mm_5699.1	chr1	43187237	43187437	-	1	NA	NA	NA	9424	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.000000	0.577114	
mm_148392.1	chr19	3708241	3708441	+	1	NA	NA	NA	8	NM_028077	72056	Mm.23780	NM_028077	ENSMUSG00000035372	1810055G02Rik	AI256204	RIKEN cDNA 1810055G02 gene	protein-coding	0.130000	0.701493	
mm_98918.1	chr11	98294159	98294359	+	1	NA	NA	NA	31653	NR_039579	100628613		NR_039579	ENSMUSG00000093176	Mir5119	mmu-mir-5119|mu-mir-5119	microRNA 5119	ncRNA	0.015000	0.462687	
mm_13071.1	chr2	91119109	91119309	+	1	NA	NA	NA	1065	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.060000	0.611940	
mm_104478.1	chr11	95569774	95569974	-	1	NA	NA	NA	17824	NM_033217	18053	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	0.005000	0.527363	
mm_91429.1	chr10	33206534	33206734	-	1	NA	NA	NA	49723	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.005000	0.487562	
mm_61419.1	chr7	73617886	73618086	+	1	NA	NA	NA	-59591	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.050000	0.631841	
mm_36725.1	chr4	99030721	99030921	-	1	NA	NA	NA	-133	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.010000	0.373134	
mm_23463.1	chr3	60472730	60472930	+	1	NA	NA	NA	0	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.015000	0.383085	
mm_50650.1	chr6	51470100	51470300	+	1	NA	NA	NA	-306	NM_016806	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.100000	0.606965	
mm_120097.1	chr14	58036567	58036767	+	1	NA	NA	NA	-36019	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.005000	0.507463	
mm_61713.1	chr7	81523443	81523643	+	1	NA	NA	NA	-7	NR_045299	100504421	Mm.217071	NR_045299	ENSMUSG00000097277	2900076A07Rik	WI1-1616M8.2	RIKEN cDNA 2900076A07 gene	ncRNA	0.070000	0.587065	
mm_140824.1	chr17	23620339	23620539	-	1	NA	NA	NA	19613	NM_001289482	332221	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	0.030000	0.467662	
mm_42347.1	chr5	114911164	114911364	+	1	NA	NA	NA	-11976	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.020000	0.477612	43(CCTTAAAGAGCT,+,0.00)
mm_167195.1	chr7	142653749	142653949	-	1	NA	NA	NA	1147	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.040000	0.532338	
mm_64787.1	chr7	6155855	6156055	-	1	NA	NA	NA	16	NM_001013012	67109	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.110000	0.741294	
mm_70772.1	chr8	22060622	22060822	+	1	NA	NA	NA	1	NM_183142	207958	Mm.267439	NM_183142	ENSMUSG00000063362	Alg11	AI849156|AW492253|B230397C21|Mmat-4(5)	asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)	protein-coding	0.075000	0.636816	
mm_108505.1	chr12	83950729	83950929	+	1	NA	NA	NA	221	NM_023633	71952	Mm.251483	NM_023633	ENSMUSG00000046791	2410016O06Rik	MAPJD|NO66	RIKEN cDNA 2410016O06 gene	protein-coding	0.170000	0.756219	
mm_121417.1	chr14	119722269	119722469	+	1	NA	NA	NA	-26858	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA	0.005000	0.442786	
mm_154794.1	chrX	13202444	13202644	+	1	NA	NA	NA	33739	NR_045430	72122	Mm.75434	NR_045429	ENSMUSG00000100714	2010308F09Rik	-	RIKEN cDNA 2010308F09 gene	ncRNA	0.035000	0.492537	-18(CACTATAAAGAC,-,0.00)
mm_116452.1	chr13	43226808	43227008	-	1	NA	NA	NA	-55407	NM_001252640	67046	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	0.000000	0.268657	
mm_97768.1	chr11	82045448	82045648	+	1	NA	NA	NA	-164	NM_013654	20306	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	0.000000	0.373134	
mm_13350.1	chr2	102998499	102998699	+	1	NA	NA	NA	74914	NM_175094	27402	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0.020000	0.427861	
mm_148734.1	chr19	5878533	5878733	+	1	NA	NA	NA	167	NM_134154	107375	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0.020000	0.522388	
mm_73873.1	chr8	119086462	119086662	+	1	NA	NA	NA	-257976	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.005000	0.447761	
mm_28419.1	chr3	90433429	90433629	-	1	NA	NA	NA	107	NM_145540	229543	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	0.115000	0.701493	
mm_117182.1	chr13	63431616	63431816	-	1	NA	NA	NA	29	NM_001347515	14088	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	0.105000	0.621891	
mm_46380.1	chr5	103970745	103970945	-	1	NA	NA	NA	6543	NM_198030	243168	Mm.284944	NM_198030	ENSMUSG00000034528	Hsd17b13	AI047820|PAN1B-like|Pan1b	hydroxysteroid (17-beta) dehydrogenase 13	protein-coding	0.040000	0.447761	-59(CATTTTAAAAGG,-,0.00)
mm_125239.1	chr15	34238641	34238841	+	1	NA	NA	NA	715	NM_033521	114128	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	0.080000	0.577114	
mm_146338.1	chr18	82475064	82475264	+	1	NA	NA	NA	41	NM_001025245	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.110000	0.756219	
mm_154098.1	chr19	57008105	57008305	-	1	NA	NA	NA	370	NM_146102	226250	Mm.226284	NM_146102	ENSMUSG00000025083	Afap1l2	AU041783|C86904|mKIAA1914	actin filament associated protein 1-like 2	protein-coding	0.125000	0.721393	
mm_116618.1	chr13	48872379	48872579	-	1	NA	NA	NA	-1594	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.005000	0.562189	
mm_77351.1	chr8	119575074	119575274	-	1	NA	NA	NA	26	NM_175185	72552	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	0.165000	0.776119	
mm_53466.1	chr6	134920563	134920763	+	1	NA	NA	NA	262	NM_009875	12576	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	0.100000	0.701493	
mm_129611.1	chr15	79958299	79958499	-	1	NA	NA	NA	-25753	NM_144811	52609	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	0.005000	0.517413	
mm_51396.1	chr6	78371125	78371325	+	1	NA	NA	NA	340	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.010000	0.502488	
mm_134728.1	chr16	22898873	22899073	-	1	NA	NA	NA	-4587	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.040000	0.592040	
mm_131685.1	chr16	20678133	20678333	+	1	NA	NA	NA	5506	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.020000	0.592040	
mm_77807.1	chr9	3036229	3036429	+	1	NA	NA	NA	2414	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.030000	0.358209	
mm_47828.1	chr5	134269119	134269319	-	1	NA	NA	NA	-39594	NR_104383	17969	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.025000	0.532338	
mm_16127.1	chr2	170201888	170202088	+	1	NA	NA	NA	-59313	NM_001159683	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.030000	0.611940	
mm_18905.1	chr2	76719866	76720066	-	1	NA	NA	NA	44651	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.015000	0.402985	-22(CCTTTTAGACAA,+,0.00)
mm_107148.1	chr12	23163327	23163527	+	1	NA	NA	NA	-153184	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA	0.035000	0.492537	
mm_124093.1	chr14	79199052	79199252	-	1	NA	NA	NA	48215	NM_001033215	105590	Mm.486536	NM_001033215	ENSMUSG00000071262	Zfp957	AU017455	zinc finger protein 957	protein-coding	0.010000	0.547264	77(TTCTTTATAAGA,-,0.00)
mm_64330.1	chr7	142283111	142283311	+	1	NA	NA	NA	-8848	NM_001199309	100043627	Mm.388589	NM_001199309	ENSMUSG00000056885	Gm4559	-	predicted gene 4559	protein-coding	0.010000	0.507463	
mm_46878.1	chr5	113843929	113844129	-	1	NA	NA	NA	-13528	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.025000	0.462687	
mm_100230.1	chr11	117199585	117199785	+	1	NA	NA	NA	24	NM_001113486	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.135000	0.766169	
mm_151903.1	chr19	5799259	5799459	-	1	NA	NA	NA	3313	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.393035	-54(GTCTTTTAGAGG,-,0.00),-53(TCTTTTAGAGGG,+,0.00)
mm_56370.1	chr6	93913553	93913753	-	1	NA	NA	NA	37	NM_001286788	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.040000	0.537313	18(GCTTAAATACAG,+,0.00),66(TGATATAAAAGG,-,0.00)
mm_64506.1	chr7	143479633	143479833	+	1	NA	NA	NA	4617	NM_001042760	18400	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0.020000	0.661692	
mm_105540.1	chr11	106301709	106301909	-	1	NA	NA	NA	87	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.020000	0.532338	-34(GGGTATAAAAAG,-,0.00)
mm_16831.1	chr2	11492558	11492758	-	1	NA	NA	NA	9432	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.025000	0.502488	
mm_88130.1	chr10	69398632	69398832	+	1	NA	NA	NA	-45820	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.065000	0.681592	
mm_120845.1	chr14	75199313	75199513	+	1	NA	NA	NA	-42874	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.010000	0.462687	
mm_167986.1	chrX	170009171	170009371	+	1	NA	NA	NA	-30354	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.195000	0.830846	
mm_140266.1	chr17	84682997	84683197	+	1	NA	NA	NA	-24	NM_001347418	67470	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP-binding cassette, sub-family G (WHITE), member 8	protein-coding	0.015000	0.507463	
mm_90195.1	chr10	120208728	120208928	+	1	NA	NA	NA	2	NM_026617	68212	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	0.100000	0.666667	
mm_170929.1	chr2	40522941	40523141	-	1	NA	NA	NA	-1296703	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding	0.010000	0.432836	
mm_138032.1	chr17	33919507	33919707	+	1	NA	NA	NA	129	NM_009318	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.040000	0.552239	
mm_150104.1	chr19	29499241	29499441	+	1	NA	NA	NA	22646	NR_015567	77779	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.015000	0.407960	
mm_7613.1	chr1	126626204	126626404	-	1	NA	NA	NA	-133377	NM_172484	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.005000	0.437811	7(TCTTATATAGTC,+,0.00)
mm_46989.1	chr5	115333947	115334147	-	1	NA	NA	NA	6870	NR_036616	108014	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0.015000	0.457711	
mm_36300.1	chr4	68761978	68762178	-	1	NA	NA	NA	192319	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.010000	0.537313	
mm_52108.1	chr6	97888164	97888364	+	1	NA	NA	NA	-41553	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.010000	0.482587	
mm_32381.1	chr4	106464130	106464330	+	1	NA	NA	NA	95	NM_153565	100102	Mm.133268	NM_153565	ENSMUSG00000044254	Pcsk9	AI415265|AI747682|FH3|HCHOLA3|Narc1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding	0.055000	0.557214	
mm_34461.1	chr4	148140432	148140632	+	1	NA	NA	NA	42	NM_027985	71890	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding	0.080000	0.626866	
mm_169470.1	chr14	67893815	67894015	-	1	NA	NA	NA	-34170	NR_105857	102465310		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	0.000000	0.527363	
mm_46694.1	chr5	110094322	110094522	-	1	NA	NA	NA	-5547	NM_207279	403178	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0.045000	0.547264	
mm_3274.1	chr1	136570506	136570706	+	1	NA	NA	NA	-54295	NM_177643	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.035000	0.527363	
mm_76566.1	chr8	88636058	88636258	-	1	NA	NA	NA	-30	NM_027840	71607	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	0.010000	0.477612	
mm_70935.1	chr8	25849544	25849744	+	1	NA	NA	NA	21	NM_008432	16532	Mm.289679	NM_008432	ENSMUSG00000031576	Kcnu1	Kcnma3|Slo3|mSlo3	potassium channel, subfamily U, member 1	protein-coding	0.025000	0.447761	
mm_61548.1	chr7	79364030	79364230	+	1	NA	NA	NA	22897	NM_020599	19771	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	0.010000	0.482587	-26(GCATTTAGAGAC,+,0.00)
mm_137276.1	chr17	24720010	24720210	+	1	NA	NA	NA	47	NM_008503	16898	Mm.157452	NM_008503	ENSMUSG00000044533	Rps2	Llrep3|S4	ribosomal protein S2	protein-coding	0.075000	0.587065	
mm_159047.1	chr1	184999692	184999892	-	1	NA	NA	NA	-243	NM_145515	226778	Mm.7445	NM_145515	ENSMUSG00000026620	Mark1	AW491150|B930025N23Rik|Emk3|Par-1c|mKIAA1477|mPar-1c	MAP/microtubule affinity regulating kinase 1	protein-coding	0.225000	0.865672	
mm_52954.1	chr6	123049910	123050110	+	1	NA	NA	NA	48	NM_001190310	69810	Mm.333374	NM_027218	ENSMUSG00000030147	Clec4b1	1810046I24Rik|Aplra2|Clec4b|DCAR|DCARbeta|Dcar2	C-type lectin domain family 4, member b1	protein-coding	0.000000	0.412935	
mm_62360.1	chr7	100523891	100524091	+	1	NA	NA	NA	-9176	NM_153527	69387	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	0.015000	0.502488	
mm_106175.1	chr11	116680499	116680699	-	1	NA	NA	NA	6002	NR_028570	100216538		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0.030000	0.621891	
mm_86880.1	chr10	21997075	21997275	+	1	NA	NA	NA	2509	NM_011361	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.030000	0.527363	
mm_80950.1	chr9	102900107	102900307	+	1	NA	NA	NA	65287	NM_001042607	20187	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0.015000	0.527363	
mm_100248.1	chr11	117308073	117308273	+	1	NA	NA	NA	-23542	NM_017380	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.020000	0.606965	
mm_67122.1	chr7	70361636	70361836	-	1	NA	NA	NA	-1143	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.080000	0.542289	-99(CCTTATAAGGCG,+,0.00),-37(CACTATATAGAG,-,0.00)
mm_167394.1	chr8	95293988	95294188	-	1	NA	NA	NA	12497	NM_145601	333329	Mm.484049	NM_145601	ENSMUSG00000031789	Cngb1	Cngb1b|Garp2|Gm1959	cyclic nucleotide gated channel beta 1	protein-coding	0.030000	0.577114	
mm_57427.1	chr6	124913999	124914199	-	1	NA	NA	NA	-2394	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.025000	0.636816	
mm_12899.1	chr2	84809124	84809324	+	1	NA	NA	NA	10396	NM_019949	56791	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.025000	0.502488	
mm_67742.1	chr7	90353812	90354012	-	1	NA	NA	NA	-33069	NM_001040087	83671	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	0.015000	0.447761	
mm_168305.1	chr11	106786950	106787150	-	1	NA	NA	NA	1444	NM_007840	13207	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0.005000	0.432836	
mm_77523.1	chr8	122946423	122946623	-	1	NA	NA	NA	95761	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.010000	0.343284	
mm_36557.1	chr4	86984103	86984303	-	1	NA	NA	NA	109789	NM_139306	230379	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0.010000	0.452736	
mm_126290.1	chr15	79347445	79347645	+	1	NA	NA	NA	25	NM_010755	17133	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.100000	0.641791	
mm_109083.1	chr12	104413588	104413788	+	1	NA	NA	NA	6980	NM_009252	20716	Mm.482074	NM_009252	ENSMUSG00000021091	Serpina3n	Spi2-2|Spi2.2|Spi2/eb.4	serine (or cysteine) peptidase inhibitor, clade A, member 3N	protein-coding	0.010000	0.517413	
mm_100976.1	chr11	7152299	7152499	-	1	NA	NA	NA	36170	NR_045101	100041347	Mm.300962	NR_045101	ENSMUSG00000087512	Gm11985	OTTMUSG00000005133	predicted gene 11985	ncRNA	0.010000	0.562189	
mm_40961.1	chr5	76951705	76951905	+	1	NA	NA	NA	-227	NM_172146	231327	Mm.202337	NM_172146	ENSMUSG00000029246	Ppat	5730454C12Rik|AA408689|AA675351|AI507113|C79945	phosphoribosyl pyrophosphate amidotransferase	protein-coding	0.060000	0.572139	
mm_7050.1	chr1	87127487	87127687	-	1	NA	NA	NA	2579	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.090000	0.636816	
mm_7252.1	chr1	93731867	93732067	-	1	NA	NA	NA	-41	NM_001310761	67026	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	0.020000	0.447761	-51(TCTTTTATAGTA,+,0.00)
mm_54138.1	chr6	21856239	21856439	-	1	NA	NA	NA	-3824	NM_173007	269831	Mm.21950	NM_173007	ENSMUSG00000029669	Tspan12	9030619E17|AI426782|AI663988|AW111457|Tm4sf12	tetraspanin 12	protein-coding	0.015000	0.313433	
mm_152489.1	chr19	11051915	11052115	-	1	NA	NA	NA	-1449	NR_102366	107350	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.005000	0.328358	
mm_90078.1	chr10	116473927	116474127	+	1	NA	NA	NA	-504	NM_021452	58802	Mm.440652	NM_021452	ENSMUSG00000054934	Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding	0.130000	0.676617	
mm_46439.1	chr5	105030605	105030805	-	1	NA	NA	NA	22856	NM_029509	76074	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0.000000	0.492537	
mm_67120.1	chr7	70361559	70361759	-	1	NA	NA	NA	-1066	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.080000	0.582090	
mm_152401.1	chr19	10576974	10577174	-	1	NA	NA	NA	12	NM_001302218	72982	Mm.391194	NM_028411	ENSMUSG00000024666	Tmem138	1700113I01Rik|2900055D14Rik	transmembrane protein 138	protein-coding	0.060000	0.512438	
mm_105473.1	chr11	105936235	105936435	-	1	NA	NA	NA	7812	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.010000	0.592040	
mm_93649.1	chr10	117376812	117377012	-	1	NA	NA	NA	61	NM_001013391	432508	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.125000	0.716418	
mm_22506.1	chr3	7501429	7501629	+	1	NA	NA	NA	-1897	NM_173181	67306	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	0.015000	0.502488	
mm_119472.1	chr14	47298533	47298733	+	1	NA	NA	NA	319	NM_178684	218975	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	0.100000	0.686567	
mm_75523.1	chr8	56550736	56550936	-	1	NA	NA	NA	-270	NM_001009951	382010	Mm.425534	NM_001009951	ENSMUSG00000038215	Cep44	4933440G23Rik|mKIAA1712	centrosomal protein 44	protein-coding	0.085000	0.582090	
mm_97701.1	chr11	80177346	80177546	+	1	NA	NA	NA	-6426	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.000000	0.417910	
mm_8162.1	chr1	136949482	136949682	-	1	NA	NA	NA	4048	NM_001159769	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	0.035000	0.606965	-96(GCATTTATATCC,+,0.00)
mm_140548.1	chr17	6948633	6948833	-	1	NA	NA	NA	-377	NM_001083945	100037282	Mm.29830	NM_001083945	ENSMUSG00000023806	Rsph3b	Rshl2b	radial spoke 3B homolog (Chlamydomonas)	protein-coding	0.090000	0.696517	
mm_121753.1	chr14	19626776	19626976	-	1	NA	NA	NA	-24289	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.035000	0.462687	
mm_85838.1	chr9	110532691	110532891	-	1	NA	NA	NA	194	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.145000	0.726368	
mm_70196.1	chr7	144520580	144520780	-	1	NA	NA	NA	33049	NM_001033319	233977	Mm.490347	NM_001033319	ENSMUSG00000037519	Ppfia1	C030014K08Rik|C87158|LIP.1|LIP1	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	protein-coding	0.020000	0.557214	
mm_26185.1	chr3	138342702	138342902	+	1	NA	NA	NA	29516	NM_026945	69117	Mm.46265	NM_026945	ENSMUSG00000053054	Adh6a	1810009C16Rik|Adh5a	alcohol dehydrogenase 6A (class V)	protein-coding	0.020000	0.482587	
mm_81681.1	chr9	111058136	111058336	+	1	NA	NA	NA	-718	NM_001302376	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.010000	0.557214	
mm_95785.1	chr11	54955728	54955928	+	1	NA	NA	NA	7112	NM_021327	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.085000	0.577114	
mm_54586.1	chr6	38128138	38128338	-	1	NA	NA	NA	-3652	NM_080467	140494	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	0.020000	0.502488	
mm_60642.1	chr7	44849156	44849356	+	1	NA	NA	NA	32	NM_026270	67605	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	0.075000	0.547264	
mm_73926.1	chr8	119830678	119830878	+	1	NA	NA	NA	9801	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.025000	0.547264	
mm_47231.1	chr5	121385321	121385521	-	1	NA	NA	NA	194	NM_001163470	231712	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.155000	0.820896	
mm_35014.1	chr4	3574747	3574947	-	1	NA	NA	NA	-32	NM_054089	116940	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	0.115000	0.691542	
mm_27446.1	chr3	51929931	51930131	-	1	NA	NA	NA	174975	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.005000	0.407960	
mm_40888.1	chr5	75075494	75075694	+	1	NA	NA	NA	-7	NM_133256	14843	Mm.218752	NM_133256	ENSMUSG00000035946	Gsx2	Gsh-2|Gsh2	GS homeobox 2	protein-coding	0.080000	0.671642	-34(GGCTATAAAATC,-,0.00)
mm_74201.1	chr8	123891947	123892147	+	1	NA	NA	NA	2728	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.080000	0.611940	
mm_147197.1	chr18	37829996	37830196	-	1	NA	NA	NA	10550	NM_033583	93708	Mm.247203	NM_033583	ENSMUSG00000102543	Pcdhgc5	-	protocadherin gamma subfamily C, 5	protein-coding	0.005000	0.492537	
mm_170231.1	chr17	83064360	83064560	-	1	NA	NA	NA	13765	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0.055000	0.507463	
mm_169530.1	chr14	91832315	91832515	-	1	NA	NA	NA	1705524	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA	0.030000	0.502488	
mm_132982.1	chr16	52146487	52146687	+	1	NA	NA	NA	115038	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.020000	0.368159	-33(CCTTATAAAAAG,+,0.00),-33(CCTTATAAAAAG,-,0.00),-17(GCTTTTAAGGTC,+,0.00)
mm_110632.1	chr12	57544018	57544218	-	1	NA	NA	NA	2003	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.020000	0.293532	
mm_103813.1	chr11	83002564	83002764	-	1	NA	NA	NA	-10834	NM_172796	237886	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.010000	0.437811	
mm_13928.1	chr2	120976994	120977194	+	1	NA	NA	NA	32	NM_175285	96957	Mm.315212	NM_175285	ENSMUSG00000054484	Tmem62	B830009D23Rik|C77355	transmembrane protein 62	protein-coding	0.055000	0.601990	
mm_147748.1	chr18	61196115	61196315	-	1	NA	NA	NA	15381	NM_007885	13521	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	0.005000	0.492537	
mm_106560.1	chr11	120630427	120630627	-	1	NA	NA	NA	3020	NM_010756	17134	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.015000	0.587065	
mm_95540.1	chr11	52279917	52280117	+	1	NA	NA	NA	2578	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.025000	0.477612	
mm_62481.1	chr7	101879499	101879699	+	1	NA	NA	NA	-1726	NM_001291353	75430	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.010000	0.487562	
mm_94894.1	chr11	28921380	28921580	+	1	NA	NA	NA	68275	NM_146015	216616	Mm.44176	NM_146015	ENSMUSG00000020467	Efemp1	-	epidermal growth factor-containing fibulin-like extracellular matrix protein 1	protein-coding	0.015000	0.398010	
mm_83076.1	chr9	37669098	37669298	-	1	NA	NA	NA	24	NM_172454	208098	Mm.217159	NM_172454	ENSMUSG00000011118	Panx3	3230401P04|4833413G11Rik	pannexin 3	protein-coding	0.015000	0.532338	
mm_82660.1	chr9	22085317	22085517	-	1	NA	NA	NA	10	NM_001253897	26940	Mm.425568	NM_012029	ENSMUSG00000066839	Ecsit	Sitpec	ECSIT signalling integrator	protein-coding	0.075000	0.611940	
mm_141469.1	chr17	30604077	30604277	-	1	NA	NA	NA	8482	NM_025374	109801	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding	0.035000	0.487562	
mm_30123.1	chr3	141814606	141814806	-	1	NA	NA	NA	116882	NM_001277218	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.000000	0.353234	26(TTGTTTATAAGC,-,0.00)
mm_117376.1	chr13	72628395	72628595	-	1	NA	NA	NA	69	NR_030701	328287	Mm.235072	NR_030701		Gm20554	D430050G20	predicted gene, 20554	ncRNA	0.100000	0.741294	
mm_129900.1	chr15	83919276	83919476	-	1	NA	NA	NA	-3	NM_001161629	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	0.030000	0.597015	
mm_155553.1	chrX	74448415	74448615	+	1	NA	NA	NA	18834	NM_010547	16151	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	0.000000	0.512438	-44(CCCCATTTAGGG,-,0.00)
mm_35600.1	chr4	43038555	43038755	-	1	NA	NA	NA	1646	NM_001253353	230088	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0.010000	0.427861	
mm_24851.1	chr3	95736076	95736276	+	1	NA	NA	NA	-1203	NR_105981	102466787		NR_105981	ENSMUSG00000098737	Mir7014	Gm27837|mmu-mir-7014	microRNA 7014	ncRNA	0.030000	0.572139	
mm_132657.1	chr16	41639907	41640107	+	1	NA	NA	NA	106665	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.000000	0.412935	
mm_117511.1	chr13	78954756	78954956	-	1	NA	NA	NA	-755983	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.025000	0.467662	
mm_152473.1	chr19	10993081	10993281	-	1	NA	NA	NA	69	NM_001034898	545279	Mm.329729	NM_001034898	ENSMUSG00000067571	Ms4a15	E530011F12Rik|Gm1286	membrane-spanning 4-domains, subfamily A, member 15	protein-coding	0.030000	0.577114	
mm_115427.1	chr13	117234523	117234723	+	1	NA	NA	NA	14050	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.010000	0.363184	
mm_77580.1	chr8	123655472	123655672	-	1	NA	NA	NA	1643	NM_133955	69581	Mm.168257	NM_133955	ENSMUSG00000039960	Rhou	2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K	ras homolog family member U	protein-coding	0.025000	0.477612	-34(ACCTTTAAAAGG,-,0.00),-33(CCTTTAAAAGGC,+,0.00)
mm_23764.1	chr3	73121766	73121966	+	1	NA	NA	NA	55515	NR_040557	626082	Mm.428099	NR_040557	ENSMUSG00000103428	Gm20754	-	predicted gene, 20754	ncRNA	0.005000	0.402985	
mm_9631.1	chr1	176813953	176814153	-	1	NA	NA	NA	-607	NM_029756	76816	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	0.115000	0.691542	
mm_139696.1	chr17	57444968	57445168	+	1	NA	NA	NA	86382	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.015000	0.522388	
mm_131680.1	chr16	20675267	20675467	+	1	NA	NA	NA	2640	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.015000	0.547264	
mm_67770.1	chr7	95596033	95596233	-	1	NA	NA	NA	-575111	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.010000	0.412935	-23(CCATTTAAAAGA,-,0.00)
mm_120037.1	chr14	56364762	56364962	+	1	NA	NA	NA	-206	NM_138652	192113	Mm.273271	NM_138652	ENSMUSG00000022229	Atp12a	Atp1al1|HKalpha2|cHKA	ATPase, H+/K+ transporting, nongastric, alpha polypeptide	protein-coding	0.050000	0.641791	
mm_75710.1	chr8	68904465	68904665	-	1	NA	NA	NA	24010	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.000000	0.328358	
mm_125867.1	chr15	75498622	75498822	+	1	NA	NA	NA	49270	NM_001347049	102637705		NM_001347049	ENSMUSG00000093626	Ly6l	Gm20654	lymphocyte antigen 6 complex, locus L	protein-coding	0.000000	0.582090	
mm_10730.1	chr2	22895506	22895706	+	1	NA	NA	NA	84	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.120000	0.716418	
mm_85585.1	chr9	107306077	107306277	-	1	NA	NA	NA	9518	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.025000	0.567164	
mm_155308.1	chrX	61186038	61186238	+	1	NA	NA	NA	-580	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.020000	0.432836	
mm_76441.1	chr8	85019782	85019982	-	1	NA	NA	NA	-5351	NR_052011	212989	Mm.215154	NM_001130194	ENSMUSG00000052819	Best2	Vmd2l1	bestrophin 2	protein-coding	0.045000	0.616915	
mm_123692.1	chr14	69654369	69654569	-	1	NA	NA	NA	-37779	NR_105915	102465573		NR_105915	ENSMUSG00000098666	Mir6950	Gm27586|mmu-mir-6950	microRNA 6950	ncRNA	0.005000	0.412935	
mm_168114.1	chr10	15263149	15263349	-	1	NA	NA	NA	502960	NM_008703	18101	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.020000	0.417910	-21(CTGTATAAAAAG,-,0.00)
mm_37317.1	chr4	119359790	119359990	-	1	NA	NA	NA	4	NM_001270446	73332	Mm.425204	NM_028506	ENSMUSG00000028637	Ccdc30	1700001O02Rik|1700041C02Rik|1700111D19Rik|4930445I03Rik	coiled-coil domain containing 30	protein-coding	0.045000	0.497512	
mm_93804.1	chr10	120898957	120899157	-	1	NA	NA	NA	-86	NM_177092	320183	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	0.150000	0.766169	
mm_163671.1	chr13	80941019	80941219	+	1	NA	NA	NA	716	NR_103550	71416	Mm.415500	NR_103550		5430425K12Rik	-	RIKEN cDNA 5430425K12 gene	ncRNA	0.015000	0.502488	
mm_82026.1	chr9	121857665	121857865	+	1	NA	NA	NA	235	NM_019814	56295	Mm.347915	NM_019814	ENSMUSG00000038412	Higd1a	2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1	HIG1 domain family, member 1A	protein-coding	0.150000	0.741294	
mm_96434.1	chr11	67299246	67299446	+	1	NA	NA	NA	22222	NM_177369	17885	Mm.340163	NM_177369	ENSMUSG00000055775	Myh8	4832426G23Rik|AI327267|MHCp|MyHC-pn|Myhs-p|Myhsp	myosin, heavy polypeptide 8, skeletal muscle, perinatal	protein-coding	0.025000	0.572139	
mm_74199.1	chr8	123853693	123853893	+	1	NA	NA	NA	6416	NM_028536	73420	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	0.025000	0.452736	
mm_5964.1	chr1	56974410	56974610	-	1	NA	NA	NA	3041	NR_024325	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0.035000	0.323383	
mm_65557.1	chr7	27166288	27166488	-	1	NA	NA	NA	414	NM_053208	112406	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0.085000	0.726368	
mm_130570.1	chr15	99457668	99457868	-	1	NA	NA	NA	-20	NM_001001884	380969	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	0.050000	0.676617	4(GCCCCTTTAAAG,-,0.00),5(CCCCTTTAAAGC,-,0.00),6(CCCTTTAAAGCC,+,0.00),7(CCTTTAAAGCCT,+,0.00)
mm_67630.1	chr7	84151992	84152192	-	1	NA	NA	NA	-199	NM_133722	70178	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.165000	0.791045	
mm_35324.1	chr4	25800323	25800523	-	1	NA	NA	NA	-420	NM_010243	14348	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.020000	0.542289	
mm_77090.1	chr8	110793491	110793691	-	1	NA	NA	NA	12333	NM_029646	76527	Mm.77697	NM_029646	ENSMUSG00000031750	Il34	2010004A03Rik|AI593503	interleukin 34	protein-coding	0.010000	0.572139	
mm_166674.1	chr6	96978172	96978372	+	1	NA	NA	NA	82139	NM_177233	320701	Mm.131700	NM_177233	ENSMUSG00000046500	Fam19a4	C130034I18Rik|Fam19a4 Tafa-4|Tafa-4	family with sequence similarity 19, member A4	protein-coding	0.000000	0.427861	
mm_33896.1	chr4	136206333	136206533	+	1	NA	NA	NA	68	NM_001008232	230837	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	0.085000	0.666667	
mm_111597.1	chr12	101976192	101976392	-	1	NA	NA	NA	318	NM_016856	51786	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.090000	0.631841	
mm_100283.1	chr11	117798307	117798507	+	1	NA	NA	NA	747	NM_029964	77727	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	-	RIKEN cDNA 6030468B19 gene	protein-coding	0.000000	0.592040	
mm_37680.1	chr4	129189572	129189772	-	1	NA	NA	NA	55	NM_001347203	74648	Mm.172064	NM_029036	ENSMUSG00000040928	S100pbp	4930429A08Rik|AI851343|S100pbpr	S100P binding protein	protein-coding	0.060000	0.661692	
mm_70095.1	chr7	142659390	142659590	-	1	NA	NA	NA	-190	NR_002855	111975	Mm.440180	NR_002855	ENSMUSG00000086266	Igf2os	Igf2as|Peg8	insulin-like growth factor 2, opposite strand	ncRNA	0.165000	0.815920	-33(GGCTATAAGAAC,-,0.00)
mm_152291.1	chr19	9001691	9001891	-	1	NA	NA	NA	12507	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.040000	0.572139	
mm_137522.1	chr17	27325258	27325458	+	1	NA	NA	NA	-3027	NR_106075	102466818		NR_106075	ENSMUSG00000099237	Mir7216	Gm27555|mmu-mir-7216	microRNA 7216	ncRNA	0.050000	0.582090	
mm_12523.1	chr2	72173141	72173341	+	1	NA	NA	NA	-112396	NM_023057	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.015000	0.497512	
mm_148967.1	chr19	7536765	7536965	+	1	NA	NA	NA	-20594	NM_139269	225845	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.005000	0.407960	
mm_56985.1	chr6	120493830	120494030	-	1	NA	NA	NA	-123	NM_033567	94047	Mm.23088	NM_033567	ENSMUSG00000094626	Cecr6	AW048664	cat eye syndrome chromosome region, candidate 6	protein-coding	0.110000	0.761194	
mm_71207.1	chr8	40890370	40890570	+	1	NA	NA	NA	28103	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.000000	0.452736	
mm_132908.1	chr16	48872743	48872943	+	1	NA	NA	NA	235	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.000000	0.462687	
mm_125272.1	chr15	36176076	36176276	+	1	NA	NA	NA	2166	NM_001039368	17749	Mm.27375	NM_023127	ENSMUSG00000045996	Polr2k	ABC10-alpha|MafY|Mt1a|RPABC4|RPB10alpha|RPB12|RPB7.0	polymerase (RNA) II (DNA directed) polypeptide K	protein-coding	0.000000	0.333333	
mm_95408.1	chr11	49901749	49901949	+	1	NA	NA	NA	14	NM_029004	74563	Mm.258798	NM_029004	ENSMUSG00000020374	Rasgef1c	9130006A14Rik	RasGEF domain family, member 1C	protein-coding	0.175000	0.830846	
mm_84401.1	chr9	65554681	65554881	-	1	NA	NA	NA	25306	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.010000	0.572139	
mm_151326.1	chr19	55893229	55893429	+	1	NA	NA	NA	-1992	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.020000	0.412935	
mm_162008.1	chr19	41549683	41549883	+	1	NA	NA	NA	144	NM_172154	212391	Mm.422910	NM_172154	ENSMUSG00000025019	Lcor	3110023F06Rik|A630025C20Rik|Mlr2|mKIAA1795	ligand dependent nuclear receptor corepressor	protein-coding	0.005000	0.343284	
mm_111885.1	chr12	108211483	108211683	-	1	NA	NA	NA	31845	NM_009832	12454	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	0.040000	0.601990	
mm_38354.1	chr4	137785573	137785773	-	1	NA	NA	NA	10711	NM_007431	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.020000	0.462687	
mm_102287.1	chr11	55404421	55404621	-	1	NA	NA	NA	15559	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.000000	0.487562	
mm_126189.1	chr15	78616289	78616489	+	1	NA	NA	NA	19342	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.005000	0.512438	
mm_80848.1	chr9	98296764	98296964	+	1	NA	NA	NA	281	NM_144533	74080	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	0.125000	0.671642	
mm_47560.1	chr5	124425457	124425657	-	1	NA	NA	NA	357	NM_001081203	243272	Mm.23879	NM_001081203	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch homolog 1 (Drosophila)	protein-coding	0.140000	0.771144	
mm_172823.1	chr9	15434527	15434727	+	1	NA	NA	NA	-70868	NM_133214	170748	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	0.045000	0.457711	-41(GGGTATTTAAGC,-,0.00)
mm_114476.1	chr13	68597315	68597515	+	1	NA	NA	NA	-24	NM_027035	69315	Mm.272795	NM_027035	ENSMUSG00000021534	1700001L19Rik	-	RIKEN cDNA 1700001L19 gene	protein-coding	0.040000	0.567164	
mm_114280.1	chr13	58281091	58281291	+	1	NA	NA	NA	-7003	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.010000	0.462687	
mm_75902.1	chr8	71272327	71272527	-	1	NA	NA	NA	163	NM_001163042	76478	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding	0.080000	0.656716	
mm_9122.1	chr1	170255641	170255841	-	1	NA	NA	NA	-21583	NM_012009	26904	Mm.57009	NM_012009	ENSMUSG00000102418	Sh2d1b1	EAT-2|EAT-2A|Eat2|Eat2a|Sh2d1b	SH2 domain containing 1B1	protein-coding	0.075000	0.676617	
mm_148438.1	chr19	3946981	3947181	+	1	NA	NA	NA	-11727	NM_028545	73458	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	0.005000	0.517413	
mm_711.1	chr1	41743635	41743835	+	1	NA	NA	NA	-562483	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA	0.020000	0.447761	
mm_88826.1	chr10	80804009	80804209	+	1	NA	NA	NA	-1139	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.020000	0.711443	
mm_45873.1	chr5	88008208	88008408	-	1	NA	NA	NA	5783	NM_011422	20599	Mm.261199	NM_011422	ENSMUSG00000029280	Smr3a	AA589601|MSG1|MSG3|Smr1|Smr3	submaxillary gland androgen regulated protein 3A	protein-coding	0.010000	0.467662	
mm_30044.1	chr3	135719144	135719344	-	1	NA	NA	NA	-27697	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.015000	0.477612	
mm_111407.1	chr12	91215670	91215870	-	1	NA	NA	NA	105541	NR_030473	735273		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	0.005000	0.338308	
mm_127136.1	chr15	98168149	98168349	+	1	NA	NA	NA	443	NM_177716	239650	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	0.045000	0.686567	
mm_102335.1	chr11	57829353	57829553	-	1	NA	NA	NA	2694	NM_008213	15110	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed transcript 1	protein-coding	0.095000	0.552239	
mm_27004.1	chr3	25847239	25847439	-	1	NA	NA	NA	305968	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.437811	
mm_135556.1	chr16	49855738	49855938	-	1	NA	NA	NA	184	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.115000	0.776119	
mm_136087.1	chr16	84955231	84955431	-	1	NA	NA	NA	-16880	NR_045889	100038614	Mm.441351	NR_045889		Gm10791	ENSMUSG00000074933	predicted gene 10791	ncRNA	0.060000	0.507463	
mm_125301.1	chr15	37232987	37233187	+	1	NA	NA	NA	51	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	0.100000	0.671642	
mm_171293.1	chr3	90293302	90293502	+	1	NA	NA	NA	23253	NR_105979	102465612		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.105000	0.741294	
mm_48339.1	chr5	139129978	139130178	-	1	NA	NA	NA	308	NM_001253890	19085	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	0.035000	0.567164	
mm_8829.1	chr1	162571257	162571457	-	1	NA	NA	NA	529	NM_001347125	53330	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e	vesicle-associated membrane protein 4	protein-coding	0.045000	0.467662	
mm_45479.1	chr5	69592215	69592415	-	1	NA	NA	NA	-11	NM_001347363	67980	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	0.055000	0.606965	
mm_141348.1	chr17	28603460	28603660	-	1	NA	NA	NA	18894	NM_016795	20815	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	0.005000	0.398010	
mm_135933.1	chr16	73958310	73958510	-	1	NA	NA	NA	383657	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.005000	0.447761	
mm_74179.1	chr8	123477753	123477953	+	1	NA	NA	NA	-9	NM_054070	114896	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	0.135000	0.741294	
mm_19662.1	chr2	103263511	103263711	-	1	NA	NA	NA	39585	NM_007914	13661	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding	0.005000	0.333333	
mm_59505.1	chr7	27560383	27560583	+	1	NA	NA	NA	7	NM_001122767	66367	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	0.015000	0.626866	
mm_137879.1	chr17	31564764	31564964	+	1	NA	NA	NA	91	NM_016670	18771	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.135000	0.691542	
mm_76862.1	chr8	105471353	105471553	-	1	NA	NA	NA	-31	NM_026481	67971	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0.070000	0.671642	
mm_169594.1	chr15	30754014	30754214	-	1	NA	NA	NA	-285012	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.055000	0.656716	
mm_149003.1	chr19	8702732	8702932	+	1	NA	NA	NA	11065	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.005000	0.407960	69(CCCTATAGACAG,+,0.00)
mm_41558.1	chr5	93093378	93093578	+	1	NA	NA	NA	62	NM_001347377	52398	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.130000	0.741294	
mm_20978.1	chr2	151973749	151973949	-	1	NA	NA	NA	132	NM_001289150	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.055000	0.646766	
mm_151161.1	chr19	53194241	53194441	+	1	NA	NA	NA	50344	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.015000	0.462687	
mm_93999.1	chr10	127589510	127589710	-	1	NA	NA	NA	31538	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.030000	0.527363	
mm_54371.1	chr6	31131735	31131935	-	1	NA	NA	NA	-68742	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.035000	0.432836	
mm_108718.1	chr12	87157783	87157983	+	1	NA	NA	NA	-2398	NR_136901	625237	Mm.390529	NR_136901		Gm6566	EG625237	predicted gene 6566	ncRNA	0.025000	0.532338	
mm_28399.1	chr3	90213553	90213753	-	1	NA	NA	NA	-5	NM_027015	57294	Mm.270283	NM_027015	ENSMUSG00000090733	Rps27	3200001M24Rik	ribosomal protein S27	protein-coding	0.075000	0.537313	
mm_21091.1	chr2	153191392	153191592	-	1	NA	NA	NA	30191	NM_133847	99237	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.005000	0.512438	-94(GCTTTTAGACTC,+,0.00)
mm_169170.1	chr13	65613807	65614007	+	1	NA	NA	NA	335053	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.000000	0.338308	
mm_119804.1	chr14	54218935	54219135	+	1	NA	NA	NA	34894	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.030000	0.492537	
mm_129210.1	chr15	76522177	76522377	-	1	NA	NA	NA	-148	NM_130893	170729	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.120000	0.781095	
mm_71360.1	chr8	45689891	45690091	+	1	NA	NA	NA	27998	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.005000	0.427861	
mm_133816.1	chr16	95715044	95715244	+	1	NA	NA	NA	12737	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.035000	0.512438	
mm_134192.1	chr16	10992067	10992267	-	1	NA	NA	NA	954	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.020000	0.517413	
mm_146098.1	chr18	73878138	73878338	+	1	NA	NA	NA	18853	NM_001305882	71263	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	0.010000	0.427861	
mm_159223.1	chr2	129199403	129199603	+	1	NA	NA	NA	730	NM_001159593	20515	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.060000	0.522388	
mm_59949.1	chr7	30425674	30425874	+	1	NA	NA	NA	2470	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.040000	0.606965	
mm_132636.1	chr16	39777614	39777814	+	1	NA	NA	NA	875369	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.005000	0.398010	
mm_4062.1	chr1	165864551	165864751	+	1	NA	NA	NA	70297	NM_198933	18986	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0.005000	0.487562	
mm_155232.1	chrX	57200439	57200639	+	1	NA	NA	NA	-98	NR_038463	100502842	Mm.164733	NR_038463	ENSMUSG00000085808	Gm14718	OTTMUSG00000017790	predicted gene 14718	ncRNA	0.000000	0.452736	
mm_85381.1	chr9	103226034	103226234	-	1	NA	NA	NA	4152	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.010000	0.547264	
mm_68653.1	chr7	118533216	118533416	-	1	NA	NA	NA	40	NM_001304758	12850	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0.095000	0.592040	
mm_139749.1	chr17	63862961	63863161	+	1	NA	NA	NA	-920	NM_001037997	14158	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.040000	0.497512	-37(TGCCTTAAAAAG,-,0.00),-35(CCTTAAAAAGCG,+,0.00)
mm_71739.1	chr8	62951345	62951545	+	1	NA	NA	NA	100	NM_023689	72902	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding	0.090000	0.691542	
mm_25506.1	chr3	109573880	109574080	+	1	NA	NA	NA	-27	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.025000	0.492537	
mm_139586.1	chr17	57223139	57223339	+	1	NA	NA	NA	4897	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.025000	0.557214	
mm_115618.1	chr13	12068263	12068463	-	1	NA	NA	NA	38582	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.005000	0.452736	
mm_86744.1	chr10	19356290	19356490	+	1	NA	NA	NA	-149	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20|oligo3	oligodendrocyte transcription factor 3	protein-coding	0.020000	0.527363	-34(CGCTATAAAAGC,-,0.00)
mm_92149.1	chr10	67096815	67097015	-	1	NA	NA	NA	73	NM_001204915	28193	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.180000	0.845771	
mm_4403.1	chr1	172435206	172435406	+	1	NA	NA	NA	-40054	NM_029612	98365	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	0.020000	0.552239	
mm_83456.1	chr9	45246076	45246276	-	1	NA	NA	NA	20531	NR_106054	102466803		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.015000	0.532338	
mm_79397.1	chr9	54917235	54917435	+	1	NA	NA	NA	45	NM_177351	235386	Mm.259334	NM_177351	ENSMUSG00000035878	Hykk	Agphd1|C630028N24Rik	hydroxylysine kinase 1	protein-coding	0.090000	0.681592	
mm_141514.1	chr17	31678419	31678619	-	1	NA	NA	NA	588	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.030000	0.557214	
mm_79554.1	chr9	57997981	57998181	+	1	NA	NA	NA	57	NM_001346787	13070	Mm.302865	NM_019779	ENSMUSG00000032323	Cyp11a1	Cyp11a|Cypxia1|D9Ertd411e|P450scc|Scc|cscc	cytochrome P450, family 11, subfamily a, polypeptide 1	protein-coding	0.045000	0.582090	
mm_118225.1	chr13	110601809	110602009	-	1	NA	NA	NA	206865	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.020000	0.457711	-25(GCTTATATGGGT,+,0.00)
mm_72242.1	chr8	75016203	75016403	+	1	NA	NA	NA	81	NM_001316754	70823	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0.020000	0.482587	
mm_116894.1	chr13	55362716	55362916	-	1	NA	NA	NA	-33	NM_025828	66890	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding	0.055000	0.606965	
mm_18871.1	chr2	75981668	75981868	-	1	NA	NA	NA	199	NM_030188	78802	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0.075000	0.537313	
mm_50710.1	chr6	52172718	52172918	+	1	NA	NA	NA	7144	NR_131182	105242657	Mm.490651	NR_131182	ENSMUSG00000056445	Hoxaas2	2810043O09Rik|5730446D14Rik	Hoxa cluster antisense RNA 2	ncRNA	0.095000	0.606965	31(AGCCATAAAAGA,-,0.00)
mm_73154.1	chr8	94994667	94994867	+	1	NA	NA	NA	10368	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.005000	0.532338	
mm_12458.1	chr2	71319637	71319837	+	1	NA	NA	NA	47817	NM_172436	78830	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.030000	0.417910	
mm_66339.1	chr7	43443829	43444029	-	1	NA	NA	NA	-143	NM_026695	110826	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	0.035000	0.532338	
mm_135861.1	chr16	60605128	60605328	-	1	NA	NA	NA	303	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0.095000	0.701493	
mm_173129.1	chrX	170009843	170010043	+	1	NA	NA	NA	-31026	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.065000	0.606965	
mm_87899.1	chr10	62071573	62071773	+	1	NA	NA	NA	39340	NM_027251	69894	Mm.294126	NM_027251	ENSMUSG00000020083	2010107G23Rik	AA545165	RIKEN cDNA 2010107G23 gene	protein-coding	0.020000	0.527363	
mm_47855.1	chr5	134552329	134552529	-	1	NA	NA	NA	5	NM_001039162	269713	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.100000	0.731343	
mm_60581.1	chr7	44482542	44482742	+	1	NA	NA	NA	-1875	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.557214	
mm_31783.1	chr4	63580464	63580664	+	1	NA	NA	NA	20200	NR_028584	670833	Mm.32213	NR_028583	ENSMUSG00000084782	Gm11213	OTTMUSG00000000252	predicted gene 11213	ncRNA	0.035000	0.547264	
mm_117344.1	chr13	69611202	69611402	-	1	NA	NA	NA	161	NM_175283	78925	Mm.451912	NM_175283	ENSMUSG00000021594	Srd5a1	0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1	steroid 5 alpha-reductase 1	protein-coding	0.050000	0.636816	-3(GCTTATATGTGG,+,0.00)
mm_18810.1	chr2	74307610	74307810	-	1	NA	NA	NA	7	NR_040501	73962	Mm.50289	NR_040501	ENSMUSG00000085405	4930441J16Rik	Astx1a|Astx1b|Astx1c	RIKEN cDNA 4930441J16 gene	ncRNA	0.010000	0.467662	
mm_9454.1	chr1	172632742	172632942	-	1	NA	NA	NA	132	NM_026725	68440	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	0.075000	0.686567	
mm_142183.1	chr17	36642563	36642763	-	1	NA	NA	NA	-19	NM_008205	14997	Mm.57004	NM_008205	ENSMUSG00000067201	H2-M9	M9	histocompatibility 2, M region locus 9	protein-coding	0.005000	0.422886	
mm_71336.1	chr8	45507688	45507888	+	1	NA	NA	NA	0	NM_172752	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.045000	0.537313	
mm_2165.1	chr1	88259039	88259239	+	1	NA	NA	NA	10269	NR_040291	78605	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.010000	0.452736	-20(GCCCAGAAAAAG,-,0.00)
mm_153555.1	chr19	42128912	42129112	-	1	NA	NA	NA	-19	NM_027106	69534	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0.075000	0.636816	
mm_108056.1	chr12	73923145	73923345	+	1	NA	NA	NA	15378	NM_001313919	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.000000	0.358209	71(CCCCTTTTAAAG,-,0.00),72(CCCTTTTAAAGT,-,0.00),73(CCTTTTAAAGTG,+,0.00)
mm_125292.1	chr15	36771319	36771519	+	1	NA	NA	NA	19513	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.005000	0.417910	55(CCCCATAAAAGT,-,0.00)
mm_44946.1	chr5	36566465	36566665	-	1	NA	NA	NA	15832	NM_133910	100855	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.000000	0.308458	
mm_110882.1	chr12	75176692	75176892	-	1	NA	NA	NA	540	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0.085000	0.706468	
mm_136286.1	chr16	91367041	91367241	-	1	NA	NA	NA	-5642	NM_010509	15976	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.005000	0.497512	
mm_100895.1	chr11	6066015	6066215	-	1	NA	NA	NA	-367	NM_007595	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	0.040000	0.626866	-41(GCCTTTAGGGGA,+,0.00)
mm_2195.1	chr1	89454727	89454927	+	1	NA	NA	NA	16	NM_001037136	347722	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.155000	0.825871	
mm_9506.1	chr1	173737847	173738047	-	1	NA	NA	NA	3862	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.015000	0.368159	
mm_65076.1	chr7	19118281	19118481	-	1	NA	NA	NA	-1478	NM_175530	243867	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0.135000	0.726368	
mm_4929.1	chr1	191069096	191069296	+	1	NA	NA	NA	6175	NM_198654	381318	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	0.010000	0.437811	
mm_172792.1	chr9	110281175	110281375	+	1	NA	NA	NA	-12	NR_105744	102465959		NR_105744	ENSMUSG00000098973	Mir6236	Gm27547|mmu-mir-6236	microRNA 6236	ncRNA	0.030000	0.477612	
mm_70419.1	chr8	11461136	11461336	+	1	NA	NA	NA	-16693	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.010000	0.502488	
mm_98353.1	chr11	93597090	93597290	+	1	NA	NA	NA	288576	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.015000	0.432836	
mm_163205.1	chr11	97780700	97780900	+	1	NA	NA	NA	966	NR_028078	100302498	Mm.453536	NR_028078	ENSMUSG00000064901	Snora21	MBI-3	small nucleolar RNA, H/ACA box 21	snoRNA	0.010000	0.442786	
mm_129339.1	chr15	77836732	77836932	-	1	NA	NA	NA	5343	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.000000	0.368159	
mm_108526.1	chr12	84114252	84114452	+	1	NA	NA	NA	24	NM_001346528	105000	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	0.070000	0.626866	
mm_165245.1	chr2	69381816	69382016	-	1	NA	NA	NA	1454	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.020000	0.502488	
mm_64965.1	chr7	16614786	16614986	-	1	NA	NA	NA	107	NM_172739	232906	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.150000	0.741294	
mm_85858.1	chr9	110743563	110743763	-	1	NA	NA	NA	23	NM_001083935	19228	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.105000	0.805970	
mm_165099.1	chr19	55196208	55196408	-	1	NA	NA	NA	3630	NR_106146	102465990		NR_106146	ENSMUSG00000098289	Mir6715	Gm27474|mmu-mir-6715	microRNA 6715	ncRNA	0.005000	0.407960	
mm_168574.1	chr1	171252248	171252448	-	1	NA	NA	NA	2219	NM_172845	240913	Mm.491147	NM_172845	ENSMUSG00000006403	Adamts4	ADAM-TS4|ADAMTS-2|ADMP-1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	protein-coding	0.015000	0.542289	
mm_34518.1	chr4	148941049	148941249	+	1	NA	NA	NA	136757	NM_027195	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.045000	0.547264	
mm_155923.1	chrX	103356376	103356576	+	1	NA	NA	NA	0	NM_009767	12212	Mm.42223	NM_009767	ENSMUSG00000031327	Chic1	Brx|ENSMUSG00000073019|Gm10454	cysteine-rich hydrophobic domain 1	protein-coding	0.085000	0.641791	
mm_136465.1	chr16	95458979	95459179	-	1	NA	NA	NA	269	NM_001302154	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	0.020000	0.442786	
mm_106954.1	chr12	8792085	8792285	+	1	NA	NA	NA	20789	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.025000	0.587065	
mm_8232.1	chr1	138175580	138175780	-	1	NA	NA	NA	-375	NM_001268286	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.020000	0.442786	
mm_112843.1	chr13	20831029	20831229	+	1	NA	NA	NA	37016	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.402985	
mm_78782.1	chr9	43869304	43869504	+	1	NA	NA	NA	124828	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	0.010000	0.457711	
mm_28212.1	chr3	88372643	88372843	-	1	NA	NA	NA	-2	NM_001305448	12095	Mm.482191	NM_031368	ENSMUSG00000074489	Bglap3	AI461847|Bglap-rs1|OC-X|ORG|mOC-X	bone gamma-carboxyglutamate protein 3	protein-coding	0.010000	0.467662	-34(GGTTATATAAGG,-,0.00)
mm_12845.1	chr2	83293100	83293300	+	1	NA	NA	NA	-351378	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.005000	0.358209	
mm_66383.1	chr7	43979331	43979531	-	1	NA	NA	NA	3370	NM_010116	13648	Mm.440884	NM_010116	ENSMUSG00000059042	Klk1b9	EGF-BP C|Egfbp-3|Egfbp3|KAL|Klk9|kallikrein|mGk-9	kallikrein 1-related peptidase b9	protein-coding	0.020000	0.552239	
mm_58042.1	chr6	136827629	136827829	-	1	NA	NA	NA	487	NM_021714	60321	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	0.110000	0.651741	
mm_161151.1	chr13	23488733	23488933	-	1	NA	NA	NA	24	NM_001289615	238555	Mm.129668	NM_175938	ENSMUSG00000053216	Btn2a2	Btn2|D030063K05	butyrophilin, subfamily 2, member A2	protein-coding	0.030000	0.492537	
mm_115904.1	chr13	23423703	23423903	-	1	NA	NA	NA	63	NM_013924	30946	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0.060000	0.592040	
mm_129485.1	chr15	78773300	78773500	-	1	NA	NA	NA	45	NM_008595	17305	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.035000	0.681592	
mm_62698.1	chr7	110164218	110164418	+	1	NA	NA	NA	42259	NM_009516	22390	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.045000	0.537313	-34(GGGGTTAAAAGG,-,0.00)
mm_118227.1	chr13	111449148	111449348	-	1	NA	NA	NA	40793	NM_028487	73274	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.000000	0.417910	
mm_110735.1	chr12	69790190	69790390	-	1	NA	NA	NA	-54	NR_033573	74724	Mm.399254	NR_033573		4930512B01Rik	4930472D12Rik	RIKEN cDNA 4930512B01 gene	ncRNA	0.045000	0.502488	81(ACCTTTAAAAAC,-,0.00)
mm_67100.1	chr7	69909460	69909660	-	1	NA	NA	NA	413466	NR_045940	73796	Mm.410832	NR_045940	ENSMUSG00000108885	4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA	0.000000	0.497512	
mm_164776.1	chr17	94774382	94774582	+	1	NA	NA	NA	24382	NR_024720	77022	Mm.440259	NR_024720	ENSMUSG00000098090	2700099C18Rik	9430041D22Rik	NDC80 homolog, kinetochore complex component pseudogene	pseudo	0.020000	0.467662	
mm_151293.1	chr19	55412414	55412614	+	1	NA	NA	NA	96457	NM_001293686	53611	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.020000	0.447761	
mm_156348.1	chrX	139209939	139210139	+	1	NA	NA	NA	-5	NM_175541	245631	Mm.131001	NM_175541	ENSMUSG00000042515	Mum1l1	9430086K21Rik	melanoma associated antigen (mutated) 1-like 1	protein-coding	0.115000	0.711443	
mm_56479.1	chr6	99095508	99095708	-	1	NA	NA	NA	-67310	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.045000	0.467662	
mm_102539.1	chr11	61266994	61267194	-	1	NA	NA	NA	92	NM_001331114	11671	Mm.398221	NM_007437	ENSMUSG00000010025	Aldh3a2	AI194803|Ahd-3|Ahd-3r|Ahd3|Ahd3-r|Aldh4|Aldh4-r|FALDH	aldehyde dehydrogenase family 3, subfamily A2	protein-coding	0.055000	0.636816	
mm_23402.1	chr3	58062002	58062202	+	1	NA	NA	NA	101705	NR_040538	67850	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	0.015000	0.512438	
mm_39606.1	chr5	24100597	24100797	+	1	NA	NA	NA	107	NM_001161800	52323	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	0.105000	0.631841	
mm_107176.1	chr12	24864052	24864252	+	1	NA	NA	NA	32553	NM_001083341	67216	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	0.015000	0.373134	
mm_51603.1	chr6	84008841	84009041	+	1	NA	NA	NA	343	NM_001077694	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.080000	0.641791	
mm_84862.1	chr9	78585030	78585230	-	1	NA	NA	NA	2915	NM_172773	235504	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.040000	0.477612	
mm_128860.1	chr15	72806620	72806820	-	1	NA	NA	NA	3604	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.030000	0.601990	
mm_64885.1	chr7	15920007	15920207	-	1	NA	NA	NA	2264	NM_009156	20364	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0.030000	0.542289	
mm_29951.1	chr3	133091674	133091874	-	1	NA	NA	NA	-34	NM_026231	67553	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0.085000	0.626866	
mm_92190.1	chr10	68106640	68106840	-	1	NA	NA	NA	127142	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.015000	0.482587	
mm_62052.1	chr7	92447285	92447485	+	1	NA	NA	NA	-113764	NM_025515	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.015000	0.457711	
mm_140588.1	chr17	10216299	10216499	-	1	NA	NA	NA	102962	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.020000	0.517413	
mm_128898.1	chr15	73284666	73284866	-	1	NA	NA	NA	-29884	NR_029561	387169		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA	0.005000	0.343284	
mm_45565.1	chr5	73212514	73212714	-	1	NA	NA	NA	44004	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.025000	0.452736	
mm_65187.1	chr7	19696424	19696624	-	1	NA	NA	NA	1874	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.045000	0.601990	
mm_19138.1	chr2	80446989	80447189	-	1	NA	NA	NA	307	NM_011356	20378	Mm.427436	NM_011356	ENSMUSG00000027004	Frzb	Frp|Sfrp3|frezzled|fritz|frzb-1	frizzled-related protein	protein-coding	0.045000	0.547264	
mm_14569.1	chr2	135262325	135262525	+	1	NA	NA	NA	-46809	NR_040517	78805	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA	0.005000	0.318408	
mm_27013.1	chr3	26026993	26027193	-	1	NA	NA	NA	126214	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.363184	
mm_147325.1	chr18	42262048	42262248	-	1	NA	NA	NA	-77	NM_134137	107045	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	0.045000	0.492537	
mm_43210.1	chr5	129234936	129235136	+	1	NA	NA	NA	138286	NM_001347486	243277	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding	0.000000	0.452736	
mm_142218.1	chr17	37185360	37185560	-	1	NA	NA	NA	-8432	NM_023137	24108	Mm.140210	NM_023137	ENSMUSG00000035186	Ubd	FAT10	ubiquitin D	protein-coding	0.010000	0.417910	
mm_108356.1	chr12	80644414	80644614	+	1	NA	NA	NA	299	NM_026244	328133	Mm.238279	NM_026244	ENSMUSG00000048833	Slc39a9	2010002A02Rik|2610511I23Rik|4833420E20Rik|AW209151	solute carrier family 39 (zinc transporter), member 9	protein-coding	0.045000	0.567164	
mm_44836.1	chr5	34164932	34165132	-	1	NA	NA	NA	4392	NM_146159	231123	Mm.319286	NM_146159	ENSMUSG00000079555	Haus3	D4S43h|D5H4S43|D5H4S43E	HAUS augmin-like complex, subunit 3	protein-coding	0.000000	0.457711	
mm_34727.1	chr4	152178046	152178246	+	1	NA	NA	NA	46	NM_133348	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.100000	0.751244	
mm_62142.1	chr7	97101165	97101365	+	1	NA	NA	NA	19514	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.010000	0.323383	
mm_169735.1	chr15	83406105	83406305	-	1	NA	NA	NA	26645	NM_011862	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.100000	0.577114	
mm_40355.1	chr5	47983055	47983255	+	1	NA	NA	NA	0	NR_111900	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding	0.110000	0.656716	-33(TGCTATATAAAG,-,0.00),-31(CTATATAAAGAC,+,0.00)
mm_143248.1	chr17	64331871	64332071	-	1	NA	NA	NA	-88	NM_001025309	224938	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja 2, RING-H2 motif containing	protein-coding	0.150000	0.756219	
mm_46123.1	chr5	92470773	92470973	-	1	NA	NA	NA	12316	NR_105843	102466159		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0.020000	0.427861	
mm_84917.1	chr9	80067586	80067786	-	1	NA	NA	NA	783	NM_146003	215351	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.135000	0.771144	
mm_49753.1	chr6	34746451	34746651	+	1	NA	NA	NA	-33881	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.020000	0.532338	
mm_45210.1	chr5	52992237	52992437	-	1	NA	NA	NA	-45	NR_040413	75954	Mm.258937	NR_040413	ENSMUSG00000106352	5033403H07Rik	-	RIKEN cDNA 5033403H07 gene	ncRNA	0.005000	0.467662	
mm_109493.1	chr12	111445929	111446129	+	1	NA	NA	NA	3368	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.065000	0.601990	
mm_88764.1	chr10	80335009	80335209	+	1	NA	NA	NA	4964	NM_139292	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.025000	0.567164	
mm_9135.1	chr1	170857358	170857558	-	1	NA	NA	NA	10313	NM_001081304	226641	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.005000	0.487562	
mm_69020.1	chr7	126792058	126792258	-	1	NA	NA	NA	313	NM_019674	56420	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|Ppx	protein phosphatase 4, catalytic subunit	protein-coding	0.095000	0.696517	
mm_102.1	chr1	9545392	9545592	+	1	NA	NA	NA	84	NM_021511	59014	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	0.100000	0.656716	
mm_7919.1	chr1	133800869	133801069	-	1	NA	NA	NA	-47222	NM_213616	381290	Mm.188617	NM_213616	ENSMUSG00000026463	Atp2b4	Pmca4	ATPase, Ca++ transporting, plasma membrane 4	protein-coding	0.025000	0.616915	
mm_469.1	chr1	36372115	36372315	+	1	NA	NA	NA	-76	NM_001277076	100534273	Mm.389112	NM_001277076	ENSMUSG00000037432	Fer1l5	4930533C12Rik	fer-1-like 5 (C. elegans)	protein-coding	0.025000	0.552239	
mm_95747.1	chr11	54866283	54866483	+	1	NA	NA	NA	-55	NM_008248	15254	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0.130000	0.676617	
mm_61572.1	chr7	79761275	79761475	+	1	NA	NA	NA	18212	NM_001037927	626359	Mm.387216	NM_001037927	ENSMUSG00000039099	Wdr93	EG626359	WD repeat domain 93	protein-coding	0.005000	0.442786	
mm_28019.1	chr3	83044932	83045132	-	1	NA	NA	NA	4831	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.010000	0.398010	
mm_159269.1	chr2	163853686	163853886	+	1	NA	NA	NA	36	NM_001030292	241769	Mm.295337	NM_001030292	ENSMUSG00000035238	Kcnk15	KCNK11|KCNK14|KT3.3|TASK5	potassium channel, subfamily K, member 15	protein-coding	0.125000	0.696517	
mm_47847.1	chr5	134434268	134434468	-	1	NA	NA	NA	21894	NM_001081465	57080	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.020000	0.427861	
mm_50604.1	chr6	49319229	49319429	+	1	NA	NA	NA	55	NM_001311112	57895	Mm.32416	NM_175098	ENSMUSG00000050786	Ccdc126	6330407D12Rik|AA675040|AI465320|AL022711	coiled-coil domain containing 126	protein-coding	0.110000	0.701493	
mm_147901.1	chr18	65375309	65375509	-	1	NA	NA	NA	18479	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.000000	0.422886	
mm_54918.1	chr6	47800904	47801104	-	1	NA	NA	NA	2648	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.015000	0.507463	
mm_136037.1	chr16	77421692	77421892	-	1	NA	NA	NA	92464	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.025000	0.497512	
mm_126665.1	chr15	84324352	84324552	+	1	NA	NA	NA	-268	NM_022321	64099	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0.005000	0.512438	
mm_34811.1	chr4	154936045	154936245	+	1	NA	NA	NA	-8068	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.010000	0.487562	-36(CACCATAAAGGC,-,0.00)
mm_112732.1	chr13	19213562	19213762	+	1	NA	NA	NA	182151	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.020000	0.363184	
mm_60797.1	chr7	45620723	45620923	+	1	NA	NA	NA	-988	NM_001018013	73456	Mm.380445	NM_001018013	ENSMUSG00000064158	Izumo1	1700058F15Rik|Izumo	izumo sperm-egg fusion 1	protein-coding	0.015000	0.532338	72(CCTTTTCAAGAA,+,0.00)
mm_49185.1	chr6	15185282	15185482	+	1	NA	NA	NA	-124	NM_212435	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.005000	0.472637	
mm_9714.1	chr1	179803067	179803267	-	1	NA	NA	NA	848	NM_026375	226747	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.165000	0.746269	
mm_168517.1	chr11	58199495	58199695	+	1	NA	NA	NA	39	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.025000	0.562189	
mm_5299.1	chr1	21291581	21291781	-	1	NA	NA	NA	6631	NR_002858	241041	Mm.290634	NR_002858	ENSMUSG00000025936	Gm4956	EG241041	predicted gene 4956	pseudo	0.010000	0.452736	
mm_132910.1	chr16	48872856	48873056	+	1	NA	NA	NA	348	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.005000	0.432836	
mm_150101.1	chr19	29485646	29485846	+	1	NA	NA	NA	36241	NR_015567	77779	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.005000	0.482587	
mm_74620.1	chr8	13090033	13090233	-	1	NA	NA	NA	15210	NM_178708	234069	Mm.103427	NM_178708	ENSMUSG00000038542	Pcid2	A730042J05Rik	PCI domain containing 2	protein-coding	0.000000	0.388060	
mm_62763.1	chr7	112225779	112225979	+	1	NA	NA	NA	43	NM_001193305	320878	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0.105000	0.696517	
mm_44438.1	chr5	21424550	21424750	-	1	NA	NA	NA	27	NM_029195	75172	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	0.020000	0.422886	
mm_42901.1	chr5	122491637	122491837	+	1	NA	NA	NA	10488	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.025000	0.437811	
mm_171487.1	chr4	146097216	146097416	+	1	NA	NA	NA	4	NM_001037926	626316	Mm.270762	NM_001037926	ENSMUSG00000066009	Zfp987	Gm13051|OTTMUSG00000010104|OTTMUSG00000010173	zinc finger protein 987	protein-coding	0.015000	0.512438	
mm_55587.1	chr6	71440394	71440594	-	1	NA	NA	NA	143	NM_024288	68477	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.145000	0.736318	
mm_129310.1	chr15	77659747	77659947	-	1	NA	NA	NA	-16561	NM_001143686	328563	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	0.000000	0.452736	
mm_70017.1	chr7	142512193	142512393	-	1	NA	NA	NA	-5522	NR_033261	677289	Mm.350054	NR_033261	ENSMUSG00000043795	Prr33	ENSMUSG00000043795|Gm14492|OTTMUSG00000016823	proline rich 33	ncRNA	0.030000	0.557214	
mm_112455.1	chr13	5864597	5864797	+	1	NA	NA	NA	3208	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.020000	0.393035	
mm_86166.1	chr9	118887123	118887323	-	1	NA	NA	NA	-39313	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.025000	0.582090	
mm_43526.1	chr5	137152772	137152972	+	1	NA	NA	NA	-36665	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.477612	
mm_168470.1	chr1	14865181	14865381	+	1	NA	NA	NA	53581	NM_177781	277328	Mm.186329	NM_177781	ENSMUSG00000032769	Trpa1	Anktm1|TRPA1b	transient receptor potential cation channel, subfamily A, member 1	protein-coding	0.015000	0.427861	
mm_106497.1	chr11	120348436	120348636	-	1	NA	NA	NA	-41	NM_009609	11465	Mm.196173	NM_009609	ENSMUSG00000062825	Actg1	AL023024|Actg|Actl|E51	actin, gamma, cytoplasmic 1	protein-coding	0.160000	0.721393	-51(CGCCATATATGG,-,0.00),-49(CCATATATGGAC,+,0.00),11(GCTTAAATAGCG,+,0.00)
mm_155777.1	chrX	96455331	96455531	+	1	NA	NA	NA	-5	NM_001159628	15203	Mm.277092	NM_010417	ENSMUSG00000031209	Heph	C130006F04Rik|Cpl|mKIAA0698|sla	hephaestin	protein-coding	0.010000	0.502488	
mm_148416.1	chr19	3935716	3935916	+	1	NA	NA	NA	630	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.085000	0.616915	
mm_23334.1	chr3	54367509	54367709	+	1	NA	NA	NA	6502	NM_015784	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0.045000	0.507463	
mm_581.1	chr1	39367732	39367932	+	1	NA	NA	NA	-19	NM_053257	114641	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.100000	0.676617	
mm_45315.1	chr5	65435718	65435918	-	1	NA	NA	NA	24	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.095000	0.721393	
mm_156013.1	chrX	107089263	107089463	+	1	NA	NA	NA	28	NM_172435	78826	Mm.74639	NM_172435	ENSMUSG00000050921	P2ry10	5830408N17Rik|Lypsr2|P2Y10	purinergic receptor P2Y, G-protein coupled 10	protein-coding	0.000000	0.417910	
mm_60576.1	chr7	44481596	44481796	+	1	NA	NA	NA	-2821	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.492537	
mm_114674.1	chr13	80883313	80883513	+	1	NA	NA	NA	-9	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.055000	0.552239	-35(GCTCTTAAAGTG,+,0.00),61(GACTTTTTAAGA,-,0.00)
mm_91754.1	chr10	50589512	50589712	-	1	NA	NA	NA	-3057	NM_198007	77987	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.000000	0.437811	
mm_70363.1	chr8	8661723	8661923	+	1	NA	NA	NA	-1050	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.075000	0.651741	
mm_60810.1	chr7	45643860	45644060	+	1	NA	NA	NA	3983	NM_172418	74490	Mm.107442	NM_172418	ENSMUSG00000042918	Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding	0.015000	0.437811	
mm_143853.1	chr17	84161137	84161337	-	1	NA	NA	NA	26710	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.015000	0.577114	
mm_108521.1	chr12	84053266	84053466	+	1	NA	NA	NA	1215	NM_134246	171281	Mm.202331	NM_134246	ENSMUSG00000021228	Acot3	AW108394|PTE-Ia|Pte2a	acyl-CoA thioesterase 3	protein-coding	0.030000	0.437811	46(AGGCCTAAAAGC,-,0.00)
mm_9080.1	chr1	168431556	168431756	-	1	NA	NA	NA	513	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.020000	0.502488	
mm_71149.1	chr8	39298697	39298897	+	1	NA	NA	NA	817	NR_044988	621335	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	0.010000	0.318408	
mm_160910.1	chr11	82897464	82897664	+	1	NA	NA	NA	5419	NM_030224	78919	Mm.286733	NM_030224	ENSMUSG00000018844	Fndc8	4930466G16Rik	fibronectin type III domain containing 8	protein-coding	0.040000	0.552239	
mm_62204.1	chr7	97830855	97831055	+	1	NA	NA	NA	-11984	NM_011035	18479	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding	0.005000	0.532338	
mm_64048.1	chr7	140835210	140835410	+	1	NA	NA	NA	172	NM_001347605	76974	Mm.272359	NM_029821	ENSMUSG00000025481	Urah	1190003J15Rik|2810420C16Rik	urate (5-hydroxyiso-) hydrolase	protein-coding	0.040000	0.572139	
mm_89936.1	chr10	111254115	111254315	+	1	NA	NA	NA	-44464	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.000000	0.343284	
mm_136497.1	chr16	96220444	96220644	-	1	NA	NA	NA	-15257	NM_001122993	93961	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	0.005000	0.452736	
mm_143333.1	chr17	66481381	66481581	-	1	NA	NA	NA	-31731	NM_001114098	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.015000	0.542289	-35(CACTATAAAAGG,-,0.00)
mm_132823.1	chr16	45224236	45224436	+	1	NA	NA	NA	-1	NM_001037719	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.015000	0.457711	
mm_149482.1	chr19	11770329	11770529	+	1	NA	NA	NA	14	NM_025606	94063	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	0.075000	0.587065	-85(CTCTATAAAAGG,-,0.00)
mm_172246.1	chr6	69305317	69305517	-	1	NA	NA	NA	21757	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.348259	-92(GTGTTTATAAGC,-,0.00),-12(TTGTTTTAAAGC,-,0.00)
mm_63069.1	chr7	122148192	122148392	+	1	NA	NA	NA	-11143	NM_011121	18817	Mm.16525	NM_011121	ENSMUSG00000030867	Plk1	Plk|STPK13	polo-like kinase 1	protein-coding	0.015000	0.437811	
mm_15709.1	chr2	164017496	164017696	+	1	NA	NA	NA	-7628	NM_001114079	381404	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	0.020000	0.437811	
mm_125397.1	chr15	41447299	41447499	+	1	NA	NA	NA	-83	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.150000	0.761194	
mm_89566.1	chr10	95417151	95417351	+	1	NA	NA	NA	-124	NR_045339	70523	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	0.060000	0.656716	
mm_46524.1	chr5	105346434	105346634	-	1	NA	NA	NA	-58	NR_132129	634650	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	0.000000	0.497512	13(TCACATAAAAGG,-,0.00)
mm_137008.1	chr17	17827049	17827249	+	1	NA	NA	NA	-3039	NR_029536	387230		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	0.110000	0.820896	
mm_36923.1	chr4	108144903	108145103	-	1	NA	NA	NA	-20434	NM_026728	52430	Mm.270783	NM_026728	ENSMUSG00000028601	Echdc2	1300017C12Rik|2610009M20Rik|D4Ertd765e	enoyl Coenzyme A hydratase domain containing 2	protein-coding	0.005000	0.452736	
mm_30129.1	chr3	141982114	141982314	-	1	NA	NA	NA	50	NM_007560	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.035000	0.532338	
mm_103635.1	chr11	78950034	78950234	-	1	NA	NA	NA	24843	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.020000	0.572139	
mm_8543.1	chr1	155099376	155099576	-	1	NA	NA	NA	160	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.060000	0.577114	
mm_60652.1	chr7	44859647	44859847	+	1	NA	NA	NA	2344	NM_001290767	59047	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0.010000	0.562189	-100(GACTTGAAAAGG,-,0.00)
mm_30115.1	chr3	139075116	139075316	-	1	NA	NA	NA	-15	NM_001040690	229877	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.195000	0.855721	
mm_86877.1	chr10	21997005	21997205	+	1	NA	NA	NA	2439	NM_011361	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.025000	0.502488	
mm_70312.1	chr8	4238751	4238951	+	1	NA	NA	NA	111	NM_001164172	26400	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	0.130000	0.731343	
mm_59005.1	chr7	19181209	19181409	+	1	NA	NA	NA	139	NM_028153	72205	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0.030000	0.572139	
mm_18776.1	chr2	73529615	73529815	-	1	NA	NA	NA	-228	NM_153138	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.075000	0.676617	
mm_128782.1	chr15	66801529	66801729	-	1	NA	NA	NA	30200	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.005000	0.472637	-18(CCCCTTTTAAGA,-,0.00),-16(CCTTTTAAGAAG,+,0.00)
mm_82774.1	chr9	26999424	26999624	-	1	NA	NA	NA	25	NM_025862	66948	Mm.289244	NM_025862	ENSMUSG00000031969	Acad8	2310016C19Rik|AI786953	acyl-Coenzyme A dehydrogenase family, member 8	protein-coding	0.065000	0.601990	
mm_107610.1	chr12	49384867	49385067	+	1	NA	NA	NA	1960	NM_008241	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.110000	0.686567	
mm_65893.1	chr7	30090317	30090517	-	1	NA	NA	NA	93	NM_152814	72556	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	0.060000	0.601990	
mm_53153.1	chr6	125265493	125265693	+	1	NA	NA	NA	68	NR_015527	73870	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.015000	0.527363	
mm_36154.1	chr4	59581333	59581533	-	1	NA	NA	NA	-130	NM_001301367	72479	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0.065000	0.601990	
mm_96372.1	chr11	67237670	67237870	+	1	NA	NA	NA	-42	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.005000	0.487562	6(GCCTCTATAAAA,-,0.00),8(CTCTATAAAAGT,-,0.00),53(AACCCTTAAAGG,-,0.00)
mm_52915.1	chr6	122847873	122848073	+	1	NA	NA	NA	8184	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.005000	0.378109	-5(TTTTTTAAAGTC,+,0.00)
mm_150422.1	chr19	37388030	37388230	+	1	NA	NA	NA	11727	NM_010615	16551	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	0.005000	0.263682	
mm_47140.1	chr5	120548235	120548435	-	1	NA	NA	NA	37143	NM_001177594	170756	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.030000	0.562189	
mm_104874.1	chr11	99422156	99422356	-	1	NA	NA	NA	3	NM_010661	268482	Mm.436651	NM_010661	ENSMUSG00000020912	Krt12	AI835216|K12|Krt-12|Krt1-12	keratin 12	protein-coding	0.035000	0.582090	-35(GCCTATAAAGGC,+,0.00),-35(GCCTATAAAGGC,-,0.00)
mm_79046.1	chr9	46228608	46228808	+	1	NA	NA	NA	78	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.020000	0.587065	
mm_125037.1	chr15	25773914	25774114	+	1	NA	NA	NA	-69284	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.045000	0.582090	
mm_163949.1	chr14	52610260	52610460	+	1	NA	NA	NA	-114665	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.005000	0.482587	-73(GCTTTAAGACCC,+,0.00)
mm_4310.1	chr1	171844881	171845081	+	1	NA	NA	NA	5284	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.427861	
mm_25603.1	chr3	117574794	117574994	+	1	NA	NA	NA	-333	NM_029425	75769	Mm.72187	NM_029425	ENSMUSG00000033342	Plppr5	4833424O15Rik|Lppr5|PRG-5|Pap2d	phospholipid phosphatase related 5	protein-coding	0.015000	0.462687	
mm_57100.1	chr6	122590732	122590932	-	1	NA	NA	NA	11612	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.015000	0.417910	
mm_138726.1	chr17	36942817	36943017	+	1	NA	NA	NA	-134	NM_001099632	386454	Mm.105324	NM_001099632	ENSMUSG00000036492	Rnf39	BC038661|Gm1786|Gm1787|Gm320|LIRF	ring finger protein 39	protein-coding	0.065000	0.606965	-33(CCCTATAAAACC,+,0.00)
mm_168770.1	chr12	14675844	14676044	+	1	NA	NA	NA	374445	NR_045960	73972	Mm.107680	NR_045960		4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA	0.040000	0.492537	
mm_36239.1	chr4	63171921	63172121	-	1	NA	NA	NA	110	NM_010616	16552	Mm.216057	NM_010616	ENSMUSG00000028357	Kif12	-	kinesin family member 12	protein-coding	0.020000	0.502488	
mm_73645.1	chr8	110847047	110847247	+	1	NA	NA	NA	123	NM_133973	102339	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	0.055000	0.601990	
mm_31981.1	chr4	89123220	89123420	+	1	NA	NA	NA	-14050	NM_024433	66902	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	0.025000	0.532338	
mm_17334.1	chr2	26556264	26556464	-	1	NA	NA	NA	-24692	NM_178444	353156	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0.000000	0.517413	
mm_154699.1	chrX	8271319	8271519	+	1	NA	NA	NA	38	NM_172479	209837	Mm.6055	NM_172479	ENSMUSG00000031170	Slc38a5	C81234|E330031E14|JM24|SN2	solute carrier family 38, member 5	protein-coding	0.040000	0.592040	
mm_161913.1	chr18	67392593	67392793	+	1	NA	NA	NA	1962	NM_026473	67951	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	0.015000	0.487562	
mm_75129.1	chr8	34918465	34918665	-	1	NA	NA	NA	47125	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.015000	0.407960	
mm_66773.1	chr7	46827499	46827699	-	1	NA	NA	NA	-18205	NM_010699	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.015000	0.492537	
mm_58263.1	chr6	145288152	145288352	-	1	NA	NA	NA	37700	NR_045598	100039495	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	OTTMUSG00000025463	predicted gene 15706	ncRNA	0.005000	0.502488	
mm_167703.1	chr9	90245226	90245426	-	1	NA	NA	NA	25443	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.020000	0.487562	71(CCTTAAATACAC,+,0.00)
mm_32578.1	chr4	110397686	110397886	+	1	NA	NA	NA	88	NM_030231	78933	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	0.095000	0.681592	
mm_83091.1	chr9	40321032	40321232	-	1	NA	NA	NA	-12340	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.035000	0.572139	
mm_10121.1	chr2	3749155	3749355	+	1	NA	NA	NA	35797	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.010000	0.537313	
mm_140386.1	chr17	87240846	87241046	+	1	NA	NA	NA	25001	NM_176808	193813	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	0.015000	0.502488	
mm_168452.1	chr1	141189596	141189796	+	1	NA	NA	NA	-533294	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0.025000	0.512438	
mm_5089.1	chr1	4497279	4497479	-	1	NA	NA	NA	-25	NM_001289465	20671	Mm.279103	NM_011441	ENSMUSG00000025902	Sox17	-	SRY (sex determining region Y)-box 17	protein-coding	0.070000	0.601990	
mm_115498.1	chr13	3893473	3893673	-	1	NA	NA	NA	8	NM_001047159	56349	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0.090000	0.696517	
mm_111057.1	chr12	80110222	80110422	-	1	NA	NA	NA	2691	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.080000	0.641791	
mm_125238.1	chr15	34238084	34238284	+	1	NA	NA	NA	158	NM_033521	114128	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	0.110000	0.711443	
mm_132080.1	chr16	30190626	30190826	+	1	NA	NA	NA	76806	NM_027904	71756	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.020000	0.477612	-34(GGTTATAAATGG,-,0.00)
mm_29386.1	chr3	108889704	108889904	-	1	NA	NA	NA	204	NM_177091	320181	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0.025000	0.537313	
mm_163629.1	chr13	58263136	58263336	+	1	NA	NA	NA	10952	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.025000	0.492537	
mm_102832.1	chr11	69099822	69100022	-	1	NA	NA	NA	-236	NM_001159367	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.025000	0.577114	
mm_166210.1	chr5	48766332	48766532	-	1	NA	NA	NA	123125	NM_030265	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.005000	0.373134	32(GATTTTAAAGCC,+,0.00)
mm_95327.1	chr11	46739691	46739891	+	1	NA	NA	NA	-432	NM_001166632	171283	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	0.015000	0.422886	
mm_46198.1	chr5	98030709	98030909	-	1	NA	NA	NA	153	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.055000	0.621891	
mm_37341.1	chr4	119657998	119658198	-	1	NA	NA	NA	847	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.000000	0.552239	
mm_98606.1	chr11	95842136	95842336	+	1	NA	NA	NA	-59	NM_023121	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.025000	0.621891	
mm_36444.1	chr4	82386668	82386868	-	1	NA	NA	NA	119011	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.010000	0.422886	
mm_86368.1	chr9	123794734	123794934	-	1	NA	NA	NA	-11643	NM_030712	80901	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.020000	0.537313	
mm_43728.1	chr5	139547900	139548100	+	1	NA	NA	NA	4102	NM_013702	22255	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	0.030000	0.502488	-88(ATTTTTAAAGGC,+,0.00)
mm_58164.1	chr6	142571194	142571394	-	1	NA	NA	NA	320	NM_001330363	16523	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding	0.060000	0.636816	
mm_71983.1	chr8	70610301	70610501	+	1	NA	NA	NA	-2087	NM_133772	76900	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	0.045000	0.587065	
mm_59652.1	chr7	28169676	28169876	+	1	NA	NA	NA	28	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.145000	0.691542	
mm_45515.1	chr5	72504410	72504610	-	1	NA	NA	NA	30	NM_001122756	53419	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.045000	0.552239	
mm_53945.1	chr6	5193683	5193883	-	1	NA	NA	NA	163	NM_011134	18979	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.025000	0.592040	
mm_102833.1	chr11	69197368	69197568	-	1	NA	NA	NA	375	NM_009661	11688	Mm.289672	NM_009661	ENSMUSG00000020891	Alox8	15-LOX-2|15-LOX-B|8-LOX|8S-LOX|Alox15b	arachidonate 8-lipoxygenase	protein-coding	0.050000	0.616915	
mm_149323.1	chr19	10842484	10842684	+	1	NA	NA	NA	40	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.005000	0.502488	
mm_17588.1	chr2	30473398	30473598	-	1	NA	NA	NA	701	NM_030244	72500	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.200000	0.865672	
mm_146884.1	chr18	25684695	25684895	-	1	NA	NA	NA	69188	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.005000	0.402985	
mm_86710.1	chr10	18845032	18845232	+	1	NA	NA	NA	61	NM_022032	64058	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	0.135000	0.746269	
mm_104626.1	chr11	97310199	97310399	-	1	NA	NA	NA	-5417	NM_025927	67036	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.035000	0.522388	
mm_9059.1	chr1	167373423	167373623	-	1	NA	NA	NA	20274	NM_025569	66447	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	0.010000	0.393035	32(CCTTATAGACCA,+,0.00)
mm_152563.1	chr19	11586690	11586890	-	1	NA	NA	NA	18014	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.005000	0.412935	
mm_64418.1	chr7	142575432	142575632	+	1	NA	NA	NA	1615	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.010000	0.502488	
mm_128049.1	chr15	25753911	25754111	-	1	NA	NA	NA	-89287	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.000000	0.442786	
mm_147162.1	chr18	36725012	36725212	-	1	NA	NA	NA	1703	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.005000	0.383085	
mm_70728.1	chr8	18606799	18606999	+	1	NA	NA	NA	11726	NM_173189	244329	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT	microcephaly, primary autosomal recessive 1	protein-coding	0.000000	0.517413	
mm_110278.1	chr12	32058315	32058515	-	1	NA	NA	NA	2864	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.000000	0.432836	
mm_152990.1	chr19	29648290	29648490	-	1	NA	NA	NA	30	NM_001081213	226090	Mm.267131	NM_146098	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	0.110000	0.691542	
mm_140321.1	chr17	86438924	86439124	+	1	NA	NA	NA	-151846	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.015000	0.462687	
mm_10585.1	chr2	18186439	18186639	+	1	NA	NA	NA	121954	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.000000	0.298507	
mm_58081.1	chr6	136941738	136941938	-	1	NA	NA	NA	61	NM_001301301	11857	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	0.015000	0.462687	
mm_49622.1	chr6	30803282	30803482	+	1	NA	NA	NA	62083	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.457711	
mm_47517.1	chr5	124083375	124083575	-	1	NA	NA	NA	12323	NM_019875	56325	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.010000	0.567164	
mm_151702.1	chr19	4477480	4477680	-	1	NA	NA	NA	-437	NM_134164	171180	Mm.262270	NM_134164	ENSMUSG00000049303	Syt12	-	synaptotagmin XII	protein-coding	0.030000	0.432836	
mm_112229.1	chr12	113430691	113430891	-	1	NA	NA	NA	-58774	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.482587	
mm_73526.1	chr8	107544995	107545195	+	1	NA	NA	NA	-6149	NR_029553	387158		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0.030000	0.606965	
mm_171849.1	chr5	16904367	16904567	+	1	NA	NA	NA	350566	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.045000	0.631841	
mm_150745.1	chr19	43786857	43787057	+	1	NA	NA	NA	4649	NM_013806	12780	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0.025000	0.472637	
mm_10874.1	chr2	25225324	25225524	+	1	NA	NA	NA	-722	NM_146116	227613	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	0.025000	0.577114	
mm_88414.1	chr10	77033196	77033396	+	1	NA	NA	NA	84	NM_031196	20509	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.075000	0.587065	
mm_116985.1	chr13	56296286	56296486	-	1	NA	NA	NA	165	NM_019568	57266	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding	0.090000	0.631841	-38(GAATTTAAAAGA,-,0.00)
mm_163056.1	chr11	60704011	60704211	+	1	NA	NA	NA	4421	NM_008502	16897	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	lethal giant larvae homolog 1 (Drosophila)	protein-coding	0.010000	0.537313	
mm_90099.1	chr10	116964737	116964937	+	1	NA	NA	NA	97	NR_027847	103175	Mm.27138	NR_027846	ENSMUSG00000031294	D630029K05Rik	AI314111|AI875589	RIKEN cDNA D630029K05 gene	ncRNA	0.015000	0.487562	
mm_34605.1	chr4	150237630	150237830	+	1	NA	NA	NA	406	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.030000	0.552239	
mm_6729.1	chr1	82768357	82768557	-	1	NA	NA	NA	-1	NM_025453	66261	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.015000	0.492537	
mm_2065.1	chr1	87607716	87607916	+	1	NA	NA	NA	-12496	NM_001110192	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.030000	0.547264	
mm_11267.1	chr2	30020960	30021160	+	1	NA	NA	NA	25110	NR_105963	102465603		NR_105963	ENSMUSG00000098453	Mir6997	Gm27310|mmu-mir-6997	microRNA 6997	ncRNA	0.010000	0.318408	
mm_143231.1	chr17	63472636	63472836	-	1	NA	NA	NA	27844	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.020000	0.432836	
mm_136996.1	chr17	17402819	17403019	+	1	NA	NA	NA	233	NM_025681	66643	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.010000	0.497512	
mm_16213.1	chr2	173073112	173073312	+	1	NA	NA	NA	46313	NM_001081387	664799	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris|OTTMUSG00000016680	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.015000	0.507463	
mm_145343.1	chr18	56469433	56469633	+	1	NA	NA	NA	37401	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.030000	0.537313	
mm_107034.1	chr12	13487026	13487226	+	1	NA	NA	NA	140520	NR_136761	102639399	Mm.122052	NR_136761		Gm35725	-	predicted gene, 35725	ncRNA	0.015000	0.497512	
mm_153020.1	chr19	31119838	31120038	-	1	NA	NA	NA	37097	NM_031249	83410	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	0.000000	0.462687	
mm_130134.1	chr15	90898302	90898502	-	1	NA	NA	NA	74	NR_033583	20738	Mm.431547	NR_033583		Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.020000	0.497512	
mm_17992.1	chr2	38078278	38078478	-	1	NA	NA	NA	209006	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.005000	0.363184	
mm_90311.1	chr10	127000640	127000840	+	1	NA	NA	NA	31	NM_009635	11567	Mm.10739	NM_009635	ENSMUSG00000025432	Avil	Advil|DOC6	advillin	protein-coding	0.020000	0.527363	
mm_122096.1	chr14	30890611	30890811	-	1	NA	NA	NA	4235	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.045000	0.542289	
mm_159861.1	chr5	140723998	140724198	+	1	NA	NA	NA	-29	NM_173405	231842	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.045000	0.606965	
mm_164352.1	chr16	20174642	20174842	+	1	NA	NA	NA	1492	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.000000	0.398010	
mm_86946.1	chr10	24842200	24842400	+	1	NA	NA	NA	-6105	NM_134005	209558	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	0.000000	0.462687	
mm_165093.1	chr19	53874722	53874922	-	1	NA	NA	NA	-17409	NM_011050	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.000000	0.507463	
mm_142469.1	chr17	45602002	45602202	-	1	NA	NA	NA	0	NM_001177469	653016	Mm.45676	NM_001177468	ENSMUSG00000079471	Gm7325	EG653016|Esgp	predicted gene 7325	protein-coding	0.020000	0.592040	
mm_39396.1	chr5	14025344	14025544	+	1	NA	NA	NA	168	NM_011348	20349	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	0.055000	0.611940	
mm_33581.1	chr4	132532617	132532817	+	1	NA	NA	NA	2697	NM_007512	11983	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0.015000	0.482587	
mm_162514.1	chr1	156036366	156036566	-	1	NA	NA	NA	14	NM_144791	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.055000	0.676617	
mm_145560.1	chr18	60812247	60812447	+	1	NA	NA	NA	271	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.030000	0.557214	
mm_31031.1	chr4	40919955	40920155	+	1	NA	NA	NA	-1	NM_011463	20731	Mm.25246	NM_011463	ENSMUSG00000028415	Spink4	MPGC60	serine peptidase inhibitor, Kazal type 4	protein-coding	0.010000	0.527363	
mm_125926.1	chr15	76246677	76246877	+	1	NA	NA	NA	-30	NM_023168	66168	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	0.100000	0.731343	
mm_53419.1	chr6	134034927	134035127	+	1	NA	NA	NA	-673	NM_001303102	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.085000	0.666667	37(GGCTTTAAATGG,-,0.00),39(CTTTAAATGGCC,+,0.00)
mm_161629.1	chr16	87472027	87472227	+	1	NA	NA	NA	17142	NM_024258	74112	Mm.152941	NM_024258	ENSMUSG00000025616	Usp16	1200004E02Rik|2810483I07Rik|6330514E22Rik|UBPM	ubiquitin specific peptidase 16	protein-coding	0.030000	0.457711	-40(ACGTTTTAAAGG,-,0.00),-39(CGTTTTAAAGGG,-,0.00)
mm_55576.1	chr6	71396137	71396337	-	1	NA	NA	NA	22810	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.000000	0.502488	
mm_75019.1	chr8	31149868	31150068	-	1	NA	NA	NA	-348	NM_144927	234138	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	0.055000	0.462687	
mm_110892.1	chr12	75596011	75596211	-	1	NA	NA	NA	89	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.120000	0.701493	
mm_102159.1	chr11	53724419	53724619	-	1	NA	NA	NA	3725	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.010000	0.492537	
mm_83948.1	chr9	56925690	56925890	-	1	NA	NA	NA	2581	NM_175483	235406	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	0.035000	0.572139	
mm_57159.1	chr6	122758742	122758942	-	1	NA	NA	NA	-16097	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.020000	0.477612	
mm_46127.1	chr5	92501694	92501894	-	1	NA	NA	NA	3863	NM_007644	12492	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.010000	0.348259	
mm_101849.1	chr11	48838435	48838635	-	1	NA	NA	NA	530	NM_001347436	94089	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.035000	0.557214	
mm_145121.1	chr18	44380468	44380668	+	1	NA	NA	NA	68	NM_027490	70640	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0.125000	0.741294	
mm_135820.1	chr16	58479080	58479280	-	1	NA	NA	NA	44132	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.015000	0.502488	
mm_118192.1	chr13	107794716	107794916	-	1	NA	NA	NA	-33729	NR_029759	723929		NR_029759	ENSMUSG00000065425	Mir325	Mirn325|mmu-mir-325	microRNA 325	ncRNA	0.005000	0.407960	-59(GGGTTTAAAGGC,-,0.00),-6(TTTTTAATGGCC,+,0.00)
mm_29381.1	chr3	108840393	108840593	-	1	NA	NA	NA	9	NM_011504	20912	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.105000	0.721393	
mm_131527.1	chr16	17646352	17646552	+	1	NA	NA	NA	-18	NM_001166164	72315	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.130000	0.716418	
mm_120612.1	chr14	70205150	70205350	+	1	NA	NA	NA	-627	NM_001271408	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.010000	0.557214	
mm_83038.1	chr9	37348217	37348417	-	1	NA	NA	NA	75	NM_001081429	245902	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	0.065000	0.636816	
mm_2441.1	chr1	98131385	98131585	+	1	NA	NA	NA	18	NR_040439	69030	Mm.402692	NR_040439	ENSMUSG00000100182	1810006J02Rik	-	RIKEN cDNA 1810006J02 gene	ncRNA	0.010000	0.427861	-67(TGCTATATAAGG,-,0.00)
mm_104865.1	chr11	99387030	99387230	-	1	NA	NA	NA	2234	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.010000	0.407960	
mm_50727.1	chr6	52313338	52313538	+	1	NA	NA	NA	-60	NM_007966	14028	Mm.389754	NM_007966	ENSMUSG00000005503	Evx1	Evx-1	even-skipped homeobox 1	protein-coding	0.040000	0.532338	
mm_159866.1	chr5	145032651	145032851	-	1	NA	NA	NA	13	NM_001101463	231885	Mm.443311	NM_001101463	ENSMUSG00000061707	Gm4871	EG231885	predicted gene 4871	protein-coding	0.010000	0.507463	
mm_13286.1	chr2	101649613	101649813	+	1	NA	NA	NA	-181	NM_009019	19373	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0.010000	0.492537	
mm_152188.1	chr19	7439563	7439763	-	1	NA	NA	NA	17090	NR_105957	102466781		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	0.010000	0.398010	
mm_138384.1	chr17	35048477	35048677	+	1	NA	NA	NA	-1666	NM_033444	114584	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.015000	0.567164	
mm_150441.1	chr19	37697767	37697967	+	1	NA	NA	NA	59	NM_007811	13082	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0.090000	0.636816	-35(GGCCTTATAAAG,-,0.00),-33(CCTTATAAAGAG,+,0.00)
mm_79370.1	chr9	54595019	54595219	+	1	NA	NA	NA	8608	NM_029573	67834	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	0.010000	0.482587	
mm_136429.1	chr16	94313467	94313667	-	1	NA	NA	NA	-14855	NM_133229	170765	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	0.150000	0.756219	
mm_161121.1	chr12	108675996	108676196	+	1	NA	NA	NA	17476	NR_029771	723909		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.015000	0.537313	
mm_171312.1	chr3	95042442	95042642	-	1	NA	NA	NA	72	NM_001282017	19185	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	0.070000	0.611940	
mm_11950.1	chr2	52952587	52952787	+	1	NA	NA	NA	94819	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.015000	0.407960	-16(GTTCTTATAGGG,+,0.00),-14(TCTTATAGGGGC,+,0.00)
mm_84512.1	chr9	67032757	67032957	-	1	NA	NA	NA	11014	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.040000	0.562189	
mm_64581.1	chr7	145300551	145300751	+	1	NA	NA	NA	-258	NM_145379	211577	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	0.015000	0.582090	
mm_105010.1	chr11	100397666	100397866	-	1	NA	NA	NA	24	NM_010593	16480	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0.080000	0.676617	
mm_139114.1	chr17	47410150	47410350	+	1	NA	NA	NA	4461	NM_001172091	75462	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.080000	0.542289	
mm_28307.1	chr3	89237834	89238034	-	1	NA	NA	NA	7079	NR_121683	360213	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.040000	0.606965	
mm_5624.1	chr1	40380984	40381184	-	1	NA	NA	NA	-48486	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.020000	0.502488	
mm_108921.1	chr12	100779021	100779221	+	1	NA	NA	NA	-2	NM_145448	217830	Mm.218590	NM_145448	ENSMUSG00000021185	9030617O03Rik	-	RIKEN cDNA 9030617O03 gene	protein-coding	0.015000	0.606965	
mm_71187.1	chr8	40864202	40864402	+	1	NA	NA	NA	1935	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.005000	0.432836	
mm_125506.1	chr15	55457631	55457831	+	1	NA	NA	NA	99581	NM_026759	68537	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	0.005000	0.407960	
mm_91887.1	chr10	59908085	59908285	-	1	NA	NA	NA	28594	NM_019965	56709	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.030000	0.641791	
mm_154903.1	chrX	20961753	20961953	+	1	NA	NA	NA	125	NM_013840	22294	Mm.34779	NM_013840	ENSMUSG00000001134	Uxt	0910002B17Rik	ubiquitously expressed transcript	protein-coding	0.085000	0.572139	-34(CTCTATTTAAAC,-,0.00)
mm_12961.1	chr2	90487645	90487845	+	1	NA	NA	NA	-8571	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.005000	0.417910	
mm_101098.1	chr11	11897971	11898171	-	1	NA	NA	NA	73	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.020000	0.442786	
mm_131466.1	chr16	17043617	17043817	+	1	NA	NA	NA	-26422	NM_023249	106369	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee-like 1 (Drosophila)	protein-coding	0.015000	0.492537	
mm_90978.1	chr10	13552930	13553130	-	1	NA	NA	NA	112	NM_019961	56535	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	0.085000	0.661692	
mm_25558.1	chr3	116513019	116513219	+	1	NA	NA	NA	40	NM_010022	13171	Mm.3636	NM_010022	ENSMUSG00000000340	Dbt	D3Wsu60e	dihydrolipoamide branched chain transacylase E2	protein-coding	0.050000	0.592040	
mm_153319.1	chr19	38116792	38116992	-	1	NA	NA	NA	7919	NM_011255	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.020000	0.393035	
mm_81705.1	chr9	111275660	111275860	+	1	NA	NA	NA	3915	NM_175266	77781	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	0.010000	0.343284	
mm_161044.1	chr12	36218201	36218401	-	1	NA	NA	NA	-99	NM_027699	71156	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	0.010000	0.437811	
mm_112126.1	chr12	112929317	112929517	-	1	NA	NA	NA	78	NM_010588	16450	Mm.186146	NM_010588	ENSMUSG00000002799	Jag2	D12Ggc2e|Serh|mJagged2-1|sm	jagged 2	protein-coding	0.175000	0.810945	
mm_91265.1	chr10	23786962	23787162	-	1	NA	NA	NA	147	NM_011295	20042	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	0.095000	0.597015	
mm_128167.1	chr15	34082523	34082723	-	1	NA	NA	NA	-96	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.110000	0.691542	
mm_38044.1	chr4	133967202	133967402	-	1	NA	NA	NA	689	NM_016957	15331	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	0.125000	0.736318	
mm_33020.1	chr4	121039607	121039807	+	1	NA	NA	NA	141	NM_007741	12840	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	0.100000	0.676617	
mm_41019.1	chr5	81419969	81420169	+	1	NA	NA	NA	398476	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.000000	0.303483	
mm_11214.1	chr2	29643573	29643773	+	1	NA	NA	NA	23953	NM_001039086	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.010000	0.547264	
mm_34049.1	chr4	138239509	138239709	+	1	NA	NA	NA	-10802	NM_001099631	230863	Mm.482408	NM_001099631	ENSMUSG00000045349	Sh2d5	BC036961	SH2 domain containing 5	protein-coding	0.030000	0.527363	
mm_28270.1	chr3	88762046	88762246	-	1	NA	NA	NA	10453	NM_018804	229521	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0.015000	0.532338	
mm_140536.1	chr17	6756847	6757047	-	1	NA	NA	NA	25833	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.035000	0.567164	
mm_106570.1	chr11	120660444	120660644	-	1	NA	NA	NA	293	NM_175263	77583	Mm.32839	NM_175263	ENSMUSG00000042988	Notum	5730593N15Rik	notum pectinacetylesterase homolog (Drosophila)	protein-coding	0.140000	0.756219	
mm_170822.1	chr2	176670419	176670619	+	1	NA	NA	NA	-3	NM_001242943	545490	Mm.484023	NM_001242943	ENSMUSG00000078879	Zfp973	6230416C02Rik|Gm14306|Gm14436|OTTMUSG00000016614	zinc finger protein 973	protein-coding	0.015000	0.492537	
mm_89866.1	chr10	108162283	108162483	+	1	NA	NA	NA	-17	NM_027892	17931	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.145000	0.716418	
mm_45836.1	chr5	87694849	87695049	-	1	NA	NA	NA	4476	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.015000	0.512438	
mm_59719.1	chr7	28769678	28769878	+	1	NA	NA	NA	3026	NM_001122766	64383	Mm.272443	NM_022432	ENSMUSG00000015149	Sirt2	5730427M03Rik|SIR2L2|Sir2l	sirtuin 2	protein-coding	0.010000	0.398010	-53(CTCTTTTTAAAG,-,0.00),-51(CTTTTTAAAGCT,+,0.00)
mm_111834.1	chr12	107911941	107912141	-	1	NA	NA	NA	91373	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.025000	0.592040	
mm_150827.1	chr19	44746507	44746707	+	1	NA	NA	NA	-10787	NM_011037	18504	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0.060000	0.651741	
mm_85349.1	chr9	103210470	103210670	-	1	NA	NA	NA	-8505	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.025000	0.472637	
mm_37664.1	chr4	129111746	129111946	-	1	NA	NA	NA	6298	NM_001290706	66260	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.015000	0.492537	
mm_56276.1	chr6	91116668	91116868	-	1	NA	NA	NA	58	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.135000	0.751244	
mm_5201.1	chr1	13374142	13374342	-	1	NA	NA	NA	-159	NM_008678	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.135000	0.771144	
mm_10691.1	chr2	22622291	22622491	+	1	NA	NA	NA	64	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.065000	0.582090	
mm_138712.1	chr17	36121660	36121860	+	1	NA	NA	NA	-316	NR_046286	15024	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	0.000000	0.537313	
mm_171461.1	chr4	145670602	145670802	+	1	NA	NA	NA	5	NM_001103158	100041379	Mm.276881	NM_001103158	ENSMUSG00000058186	Zfp980	Gm13242|OTTMUSG00000011070	zinc finger protein 980	protein-coding	0.015000	0.527363	
mm_100596.1	chr11	120991326	120991526	+	1	NA	NA	NA	-93	NM_027874	104318	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0.050000	0.597015	
mm_79368.1	chr9	54586939	54587139	+	1	NA	NA	NA	528	NM_029573	67834	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	0.040000	0.537313	
mm_4806.1	chr1	185312093	185312293	+	1	NA	NA	NA	-1126	NR_029580	387189		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	0.025000	0.552239	46(CTCTTTATAAGC,-,0.00)
mm_153257.1	chr19	36918168	36918368	-	1	NA	NA	NA	1331	NM_028263	72514	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0.010000	0.358209	12(TTTTTTAAAGCA,+,0.00)
mm_161752.1	chr17	34972677	34972877	+	1	NA	NA	NA	74	NM_013558	15482	Mm.14287	NM_013558	ENSMUSG00000007033	Hspa1l	Hsc70t|Msh5	heat shock protein 1-like	protein-coding	0.035000	0.597015	
mm_118366.1	chr13	115101847	115102047	-	1	NA	NA	NA	17	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.045000	0.557214	30(GTCCCTTTAAGG,-,0.00),32(CCCTTTAAGGTT,+,0.00)
mm_53304.1	chr6	129180828	129181028	+	1	NA	NA	NA	313	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.035000	0.472637	
mm_31604.1	chr4	58285853	58286053	+	1	NA	NA	NA	-9	NM_001165996	18198	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	0.030000	0.472637	
mm_39051.1	chr4	153482856	153483056	-	1	NA	NA	NA	-126	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	0.155000	0.796020	
mm_62620.1	chr7	107370697	107370897	+	1	NA	NA	NA	7	NM_021889	60510	Mm.302793	NM_021889	ENSMUSG00000062542	Syt9	-	synaptotagmin IX	protein-coding	0.165000	0.800995	
mm_95595.1	chr11	53332400	53332600	+	1	NA	NA	NA	7811	NM_026479	67966	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0.025000	0.542289	
mm_59469.1	chr7	27308833	27309033	+	1	NA	NA	NA	24715	NM_001113549	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.065000	0.636816	
mm_172683.1	chr8	55566963	55567163	-	1	NA	NA	NA	339901	NM_175939	244486	Mm.67684	NM_175939	ENSMUSG00000046258	Adam29	-	a disintegrin and metallopeptidase domain 29	protein-coding	0.025000	0.562189	
mm_54937.1	chr6	48445683	48445883	-	1	NA	NA	NA	42	NM_020589	68910	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	0.030000	0.601990	
mm_81464.1	chr9	109861551	109861751	+	1	NA	NA	NA	-12195	NM_009921	12796	Mm.3834	NM_009921	ENSMUSG00000038357	Camp	CAP18|Cnlp|Cramp|FALL39|MCLP	cathelicidin antimicrobial peptide	protein-coding	0.025000	0.597015	
mm_57861.1	chr6	129533184	129533384	-	1	NA	NA	NA	0	NR_045270	100504641	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0.065000	0.577114	
mm_132300.1	chr16	33518435	33518635	+	1	NA	NA	NA	-60	NM_001083902	171286	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.025000	0.507463	
mm_163558.1	chr13	24375956	24376156	+	1	NA	NA	NA	-39066	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.015000	0.502488	
mm_1229.1	chr1	62764495	62764695	+	1	NA	NA	NA	30137	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.005000	0.388060	
mm_43660.1	chr5	138707509	138707709	+	1	NA	NA	NA	-47472	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.000000	0.487562	
mm_117865.1	chr13	98842903	98843103	-	1	NA	NA	NA	-27554	NM_172591	218503	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.000000	0.383085	
mm_131344.1	chr16	13447883	13448083	+	1	NA	NA	NA	-1540	NR_030549	100124432		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0.090000	0.701493	
mm_144572.1	chr18	31856945	31857145	+	1	NA	NA	NA	52988	NM_001170966	74320	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	0.025000	0.502488	
mm_61803.1	chr7	84528873	84529073	+	1	NA	NA	NA	19	NR_045098	100039239	Mm.44882	NR_045098		Gm2115	C77713	predicted gene 2115	ncRNA	0.120000	0.711443	-33(GCCTTTAAAATG,-,0.00),-32(CCTTTAAAATGC,+,0.00)
mm_110156.1	chr12	26455632	26455832	-	1	NA	NA	NA	720	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.432836	49(CTCTTTAAAAAA,-,0.00)
mm_19990.1	chr2	118709623	118709823	-	1	NA	NA	NA	-5760	NM_001081971	383787	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	0.005000	0.512438	
mm_146248.1	chr18	77775697	77775897	+	1	NA	NA	NA	2029	NM_007505	11946	Mm.276137	NM_007505	ENSMUSG00000025428	Atp5a1	AI035633|AL022851|AL023067|Atpm|D18Ertd206e|Mom2	ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	protein-coding	0.015000	0.437811	
mm_142360.1	chr17	43744464	43744664	-	1	NA	NA	NA	-57287	NM_207649	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.015000	0.457711	
mm_129763.1	chr15	82456292	82456492	-	1	NA	NA	NA	4015	NM_010006	13105	Mm.226708	NM_010006	ENSMUSG00000068086	Cyp2d9	Cyp2d|P450-2D	cytochrome P450, family 2, subfamily d, polypeptide 9	protein-coding	0.010000	0.582090	
mm_101951.1	chr11	50278582	50278782	-	1	NA	NA	NA	13654	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.005000	0.383085	
mm_44584.1	chr5	24908356	24908556	-	1	NA	NA	NA	53	NM_001170556	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.150000	0.810945	
mm_10165.1	chr2	4401448	4401648	+	1	NA	NA	NA	572	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.080000	0.597015	
mm_84223.1	chr9	61946596	61946796	-	1	NA	NA	NA	103	NM_024245	71819	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.120000	0.671642	
mm_58708.1	chr7	12966146	12966346	+	1	NA	NA	NA	382	NM_178732	243834	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	0.085000	0.671642	
mm_51338.1	chr6	72414238	72414438	+	1	NA	NA	NA	30	NM_019802	56316	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	0.090000	0.666667	
mm_26215.1	chr3	138758347	138758547	+	1	NA	NA	NA	16239	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.000000	0.467662	
mm_26922.1	chr3	20249469	20249669	-	1	NA	NA	NA	-7388	NM_007753	12873	Mm.1135	NM_007753	ENSMUSG00000001865	Cpa3	MC-CPA	carboxypeptidase A3, mast cell	protein-coding	0.005000	0.343284	
mm_73239.1	chr8	104143142	104143342	+	1	NA	NA	NA	-27271	NM_001141924	65115	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	0.015000	0.502488	-100(CCTTAAATATCC,+,0.00),19(CCTCATATACAC,+,0.00)
mm_26000.1	chr3	135212471	135212671	+	1	NA	NA	NA	8	NM_173762	229841	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0.100000	0.646766	
mm_140160.1	chr17	80224370	80224570	+	1	NA	NA	NA	-19	NM_026053	67242	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem (nuclear organelle) associated protein 6	protein-coding	0.060000	0.587065	
mm_97754.1	chr11	80505222	80505422	+	1	NA	NA	NA	3784	NR_126552	77417	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	0.015000	0.522388	
mm_67198.1	chr7	74284174	74284374	-	1	NA	NA	NA	270506	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.005000	0.348259	
mm_20558.1	chr2	131074210	131074410	-	1	NA	NA	NA	-10496	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.010000	0.577114	
mm_56162.1	chr6	87981517	87981717	-	1	NA	NA	NA	-66	NR_026990	434064	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	0.130000	0.751244	
mm_112811.1	chr13	20794203	20794403	+	1	NA	NA	NA	190	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.497512	
mm_45677.1	chr5	77309972	77310172	-	1	NA	NA	NA	14	NM_019836	56412	Mm.129136	NM_019836	ENSMUSG00000036285	Noa1	2610024G14Rik|AU022345|AtNOS1|mAtNOS1	nitric oxide associated 1	protein-coding	0.155000	0.746269	
mm_113527.1	chr13	37826562	37826762	+	1	NA	NA	NA	-250	NM_001177868	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.110000	0.731343	
mm_104269.1	chr11	89060458	89060658	-	1	NA	NA	NA	190	NM_019505	56077	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	0.140000	0.736318	
mm_93481.1	chr10	111995773	111995973	-	1	NA	NA	NA	1391	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.005000	0.427861	43(CCTTTTAGGGTT,+,0.00)
mm_155383.1	chrX	71816025	71816225	+	1	NA	NA	NA	45	NM_001290781	67048	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding	0.015000	0.507463	-78(GACCATTTAAGG,-,0.00),-76(CCATTTAAGGGC,+,0.00)
mm_24241.1	chr3	89116609	89116809	+	1	NA	NA	NA	-14742	NM_001253751	110196	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	0.015000	0.527363	
mm_125342.1	chr15	39112792	39112992	+	1	NA	NA	NA	18	NM_198606	223499	Mm.321937	NM_198606	ENSMUSG00000022300	Dcaf13	Gm83|Wdsof1	DDB1 and CUL4 associated factor 13	protein-coding	0.095000	0.651741	48(CGGTTTAAAGGC,-,0.00)
mm_99602.1	chr11	104550594	104550794	+	1	NA	NA	NA	31	NM_010858	17896	Mm.390355	NM_010858	ENSMUSG00000061086	Myl4	ALC1|AMLC|ELC|ELC1a|GT1|MLC1a|Myla	myosin, light polypeptide 4	protein-coding	0.065000	0.606965	
mm_172610.1	chr8	18607264	18607464	+	1	NA	NA	NA	12191	NM_173189	244329	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT	microcephaly, primary autosomal recessive 1	protein-coding	0.025000	0.482587	
mm_15012.1	chr2	152604237	152604437	+	1	NA	NA	NA	10	NM_001037247	266620	Mm.330669	NM_001037247	ENSMUSG00000044863	Defb36	BD-36|Defb123|mBD-36	defensin beta 36	protein-coding	0.040000	0.577114	
mm_140652.1	chr17	12691957	12692157	-	1	NA	NA	NA	-16219	NM_009202	20517	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.025000	0.482587	
mm_168665.1	chr1	191120852	191121052	+	1	NA	NA	NA	22538	NM_030060	381319	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.040000	0.437811	
mm_118506.1	chr14	13976052	13976252	+	1	NA	NA	NA	-14839	NM_025435	66231	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.000000	0.378109	
mm_92713.1	chr10	80797776	80797976	-	1	NA	NA	NA	750	NM_023900	78670	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.110000	0.716418	
mm_113202.1	chr13	24990288	24990488	+	1	NA	NA	NA	29929	NM_001013389	380836	Mm.387097	NM_001013389	ENSMUSG00000021339	Mrs2	Gm902|HPT|Mrs2l|RPT	MRS2 magnesium transporter	protein-coding	0.005000	0.447761	-5(GCCTAGAAAGGG,-,0.00),41(TCCTATAAAAAA,-,0.00)
mm_14449.1	chr2	131103369	131103569	+	1	NA	NA	NA	-16704	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.010000	0.487562	
mm_14352.1	chr2	129603637	129603837	+	1	NA	NA	NA	10568	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.000000	0.606965	
mm_150332.1	chr19	34574994	34575194	+	1	NA	NA	NA	-8435	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.000000	0.323383	
mm_41398.1	chr5	90773094	90773294	+	1	NA	NA	NA	759	NM_019932	56744	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	0.005000	0.457711	26(CCCTATATAAGA,-,0.00)
mm_21367.1	chr2	157135023	157135223	-	1	NA	NA	NA	99	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.090000	0.666667	
mm_71439.1	chr8	46511665	46511865	+	1	NA	NA	NA	20799	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.005000	0.318408	
mm_154782.1	chrX	13041745	13041945	+	1	NA	NA	NA	-170	NR_038158	70489	Mm.383563	NR_038158	ENSMUSG00000087424	5730405O15Rik	-	RIKEN cDNA 5730405O15 gene	ncRNA	0.070000	0.661692	
mm_142584.1	chr17	46726235	46726435	-	1	NA	NA	NA	2830	NM_010321	14711	Mm.29395	NM_010321	ENSMUSG00000002769	Gnmt	-	glycine N-methyltransferase	protein-coding	0.055000	0.626866	
mm_79661.1	chr9	59657126	59657326	+	1	NA	NA	NA	858	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.085000	0.611940	
mm_83961.1	chr9	57148026	57148226	-	1	NA	NA	NA	-1092	NM_028347	72774	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0.030000	0.517413	54(ACTTTAATGGGG,+,0.00)
mm_116595.1	chr13	48545651	48545851	-	1	NA	NA	NA	-7479	NR_029725	387244		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.070000	0.741294	
mm_103125.1	chr11	70220683	70220883	-	1	NA	NA	NA	211	NM_172371	69309	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	0.035000	0.577114	-81(CGGTTTATAGGG,-,0.00),-79(GTTTATAGGGCC,+,0.00)
mm_94588.1	chr11	11741751	11741951	+	1	NA	NA	NA	51674	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.025000	0.477612	
mm_27942.1	chr3	79628658	79628858	-	1	NA	NA	NA	9	NM_025794	66841	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	0.065000	0.611940	
mm_57011.1	chr6	121130975	121131175	-	1	NA	NA	NA	-53	NM_001270475	194401	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0.050000	0.616915	
mm_121434.1	chr14	120412962	120413162	+	1	NA	NA	NA	-65399	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.025000	0.557214	
mm_66323.1	chr7	42447996	42448196	-	1	NA	NA	NA	-16	NM_027702	71162	Mm.158598	NM_027702	ENSMUSG00000030463	4933421I07Rik	-	RIKEN cDNA 4933421I07 gene	protein-coding	0.005000	0.512438	
mm_2459.1	chr1	104780825	104781025	+	1	NA	NA	NA	12106	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding	0.000000	0.373134	
mm_151127.1	chr19	47937572	47937772	+	1	NA	NA	NA	-40	NM_001163267	381229	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	0.105000	0.671642	54(CCTTTTAGACAC,+,0.00)
mm_124794.1	chr15	8168949	8169149	+	1	NA	NA	NA	-57	NM_001162906	73692	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0.125000	0.766169	
mm_135178.1	chr16	35939620	35939820	-	1	NA	NA	NA	-693	NM_001013371	209200	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0.025000	0.432836	
mm_111101.1	chr12	80791088	80791288	-	1	NA	NA	NA	656	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.090000	0.587065	
mm_3568.1	chr1	150448730	150448930	+	1	NA	NA	NA	17335	NM_021400	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.005000	0.412935	
mm_30348.1	chr3	151745864	151746064	-	1	NA	NA	NA	3995	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.015000	0.472637	
mm_84592.1	chr9	70036699	70036899	-	1	NA	NA	NA	1289	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.005000	0.497512	
mm_41952.1	chr5	105763804	105764004	+	1	NA	NA	NA	63094	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.015000	0.383085	82(TTACATAAAAGG,-,0.00)
mm_15090.1	chr2	153241513	153241713	+	1	NA	NA	NA	81	NM_080463	140484	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	0.100000	0.721393	
mm_4186.1	chr1	171160329	171160529	+	1	NA	NA	NA	4911	NM_001315500	17528	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0.020000	0.537313	
mm_15565.1	chr2	158610868	158611068	+	1	NA	NA	NA	210	NM_009508	22348	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	0.140000	0.761194	
mm_168776.1	chr12	17547892	17548092	+	1	NA	NA	NA	3119	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.005000	0.437811	
mm_152596.1	chr19	11640673	11640873	-	1	NA	NA	NA	78	NM_133246	170813	Mm.240438	NM_133246	ENSMUSG00000024681	Ms4a3	HTm4	membrane-spanning 4-domains, subfamily A, member 3	protein-coding	0.005000	0.477612	
mm_13738.1	chr2	118112998	118113198	+	1	NA	NA	NA	1222	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.050000	0.572139	
mm_27751.1	chr3	69587975	69588175	-	1	NA	NA	NA	10885	NM_020026	26879	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0.010000	0.502488	
mm_85514.1	chr9	106314240	106314440	-	1	NA	NA	NA	33279	NM_027354	70235	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	0.010000	0.467662	-37(GCCCTTATAAAA,-,0.00),-35(CCTTATAAAAGG,+,0.00),-35(CCTTATAAAAGG,-,0.00)
mm_66716.1	chr7	46098336	46098536	-	1	NA	NA	NA	1801	NM_010602	16514	Mm.333863	NM_010602	ENSMUSG00000096146	Kcnj11	Kir6.2|mBIR	potassium inwardly rectifying channel, subfamily J, member 11	protein-coding	0.020000	0.567164	
mm_96151.1	chr11	61142592	61142792	+	1	NA	NA	NA	1857	NM_021349	57916	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	0.015000	0.447761	
mm_100229.1	chr11	117199552	117199752	+	1	NA	NA	NA	-9	NM_001113486	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.135000	0.781095	
mm_150601.1	chr19	40739310	40739510	+	1	NA	NA	NA	79640	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.005000	0.507463	
mm_164463.1	chr16	59471769	59471969	+	1	NA	NA	NA	94	NM_025910	67014	Mm.289150	NM_025910	ENSMUSG00000022724	Mina	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204	myc induced nuclear antigen	protein-coding	0.105000	0.706468	
mm_76007.1	chr8	72548250	72548450	-	1	NA	NA	NA	-40	NM_027485	70625	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	0.120000	0.701493	
mm_150993.1	chr19	46599065	46599265	+	1	NA	NA	NA	59	NM_146099	226178	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.055000	0.691542	
mm_72121.1	chr8	71687132	71687332	+	1	NA	NA	NA	-2020	NM_013564	16336	Mm.476857	NM_013564	ENSMUSG00000079019	Insl3	Rlf|Rlnl	insulin-like 3	protein-coding	0.030000	0.651741	
mm_46919.1	chr5	114658298	114658498	-	1	NA	NA	NA	23	NM_022017	63873	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.150000	0.796020	
mm_137534.1	chr17	27555758	27555958	+	1	NA	NA	NA	-716	NM_001166536	15361	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0.080000	0.681592	
mm_154510.1	chrM	12094	12294	-	1	NA	NA	NA	NA	NA									0.030000	0.407960	
mm_1766.1	chr1	75549640	75549840	+	1	NA	NA	NA	3474	NM_009208	20536	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	0.020000	0.582090	
mm_50108.1	chr6	41533640	41533840	+	1	NA	NA	NA	11964	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.417910	
mm_128110.1	chr15	28025809	28026009	-	1	NA	NA	NA	-61	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.090000	0.651741	
mm_50311.1	chr6	47835711	47835911	+	1	NA	NA	NA	150	NM_027477	272347	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	0.125000	0.716418	
mm_153658.1	chr19	44395139	44395339	-	1	NA	NA	NA	12470	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.030000	0.393035	
mm_28549.1	chr3	93100572	93100772	-	1	NA	NA	NA	27151	NM_001177694	229571	Mm.331194	NM_001034860	ENSMUSG00000096879	Gm4858	EG229571	predicted gene 4858	protein-coding	0.030000	0.467662	
mm_15114.1	chr2	153649564	153649764	+	1	NA	NA	NA	215	NM_001271747	13436	Mm.89772	NM_010068	ENSMUSG00000027478	Dnmt3b	MmuIIIB	DNA methyltransferase 3B	protein-coding	0.195000	0.761194	
mm_146084.1	chr18	72032954	72033154	+	1	NA	NA	NA	318015	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.015000	0.522388	
mm_90240.1	chr10	121395754	121395954	+	1	NA	NA	NA	30764	NM_029364	75612	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.020000	0.552239	
mm_23326.1	chr3	53488596	53488796	+	1	NA	NA	NA	-97	NM_153156	229277	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	0.020000	0.537313	
mm_121183.1	chr14	103049214	103049414	+	1	NA	NA	NA	2302	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.025000	0.502488	
mm_91927.1	chr10	60357974	60358174	-	1	NA	NA	NA	11223	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.040000	0.577114	
mm_75965.1	chr8	71725567	71725767	-	1	NA	NA	NA	14	NR_131256	74015	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.145000	0.781095	
mm_71887.1	chr8	69822516	69822716	+	1	NA	NA	NA	51	NM_020028	53978	Mm.23253	NM_020028	ENSMUSG00000031861	Lpar2	Edg4|IPA2|LPA2	lysophosphatidic acid receptor 2	protein-coding	0.070000	0.681592	
mm_57958.1	chr6	135237546	135237746	-	1	NA	NA	NA	10238	NM_001080552	14840	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	0.045000	0.592040	
mm_172287.1	chr6	93648327	93648527	-	1	NA	NA	NA	264536	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.000000	0.512438	
mm_52600.1	chr6	117171427	117171627	+	1	NA	NA	NA	2992	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.030000	0.542289	
mm_128944.1	chr15	74734668	74734868	-	1	NA	NA	NA	-455	NM_026671	68311	Mm.306880	NM_026671	ENSMUSG00000022595	Lypd2	0610005K03Rik|Lypdc2|VLL	Ly6/Plaur domain containing 2	protein-coding	0.000000	0.532338	
mm_121354.1	chr14	116925465	116925665	+	1	NA	NA	NA	268	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.095000	0.597015	46(GTGTTTAAAAAA,-,0.00)
mm_98270.1	chr11	89004677	89004877	+	1	NA	NA	NA	5374	NM_009546	217069	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.000000	0.497512	
mm_64524.1	chr7	143977570	143977770	+	1	NA	NA	NA	-31584	NR_037292	100526562		NR_037292	ENSMUSG00000093221	Mir3105	mmu-mir-3105	microRNA 3105	ncRNA	0.015000	0.492537	
mm_116132.1	chr13	28953315	28953515	-	1	NA	NA	NA	267	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.060000	0.557214	
mm_130196.1	chr15	94586421	94586621	-	1	NA	NA	NA	3303	NM_008971	19230	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0.030000	0.477612	
mm_122243.1	chr14	33447027	33447227	-	1	NA	NA	NA	31	NM_001310453	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.190000	0.746269	
mm_7068.1	chr1	87659702	87659902	-	1	NA	NA	NA	39490	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.005000	0.497512	-40(GGCCATATAAAA,-,0.00)
mm_101527.1	chr11	33151189	33151389	-	1	NA	NA	NA	-3889	NR_102395	14172	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	0.005000	0.402985	
mm_20457.1	chr2	129365134	129365334	-	1	NA	NA	NA	-4668	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.020000	0.417910	
mm_89355.1	chr10	88201088	88201288	+	1	NA	NA	NA	91	NM_027487	67282	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	0.035000	0.611940	
mm_148926.1	chr19	6996075	6996275	+	1	NA	NA	NA	44	NR_027351	107328	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	0.070000	0.631841	
mm_125286.1	chr15	36726270	36726470	+	1	NA	NA	NA	64562	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.000000	0.427861	74(CACTCTAAAAGG,-,0.00)
mm_110233.1	chr12	29915058	29915258	-	1	NA	NA	NA	-22878	NM_181395	69675	Mm.251774	NM_181395	ENSMUSG00000020674	Pxdn	2310075M15Rik|C85409|E330004E07|VPO1|mKIAA0230	peroxidasin	protein-coding	0.015000	0.522388	
mm_159247.1	chr2	151668486	151668686	-	1	NA	NA	NA	-53	NM_001276400	668929	Mm.473683	NM_001114677	ENSMUSG00000074704	Rad21l	Gm14160|MeiRAD21L|Rad21l1	RAD21-like (S. pombe)	protein-coding	0.005000	0.308458	23(CCTTAAATACAA,+,0.00)
mm_116068.1	chr13	27640651	27640851	-	1	NA	NA	NA	1742	NM_001164058	19113	Mm.196424	NM_008930	ENSMUSG00000006488	Prl7a1	AA407021|AA409971|AA410116|PLP-E|PLP-G|Prlpe|Prlpg	prolactin family 7, subfamily a, member 1	protein-coding	0.005000	0.442786	-34(CCTTTTATGGGA,+,0.00)
mm_79314.1	chr9	52068130	52068330	+	1	NA	NA	NA	-19525	NR_023357	629557	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.010000	0.422886	
mm_124742.1	chr15	6599290	6599490	+	1	NA	NA	NA	19543	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.010000	0.422886	
mm_131905.1	chr16	23269219	23269419	+	1	NA	NA	NA	-21151	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.030000	0.547264	
mm_10162.1	chr2	4401212	4401412	+	1	NA	NA	NA	336	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.165000	0.820896	
mm_156769.1	chrX	160768028	160768228	+	1	NA	NA	NA	115	NM_011302	20147	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	0.005000	0.442786	
mm_25340.1	chr3	106721716	106721916	+	1	NA	NA	NA	134	NM_001286685	321000	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	0.060000	0.601990	
mm_63012.1	chr7	120982405	120982605	+	1	NA	NA	NA	-4	NM_028955	74466	Mm.189707	NM_028955	ENSMUSG00000030877	Mfsd13b	4933427G17Rik	major facilitator superfamily domain containing 13B	protein-coding	0.070000	0.577114	
mm_159997.1	chr6	119052663	119052863	-	1	NA	NA	NA	55732	NM_001159534	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.010000	0.318408	
mm_42355.1	chr5	114911576	114911776	+	1	NA	NA	NA	-11564	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.010000	0.417910	
mm_132012.1	chr16	25865681	25865881	+	1	NA	NA	NA	63865	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.005000	0.422886	
mm_93670.1	chr10	117710016	117710216	-	1	NA	NA	NA	642	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.080000	0.651741	
mm_37723.1	chr4	129558267	129558467	-	1	NA	NA	NA	5	NM_001162432	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.030000	0.577114	
mm_2128.1	chr1	88055313	88055513	+	1	NA	NA	NA	2	NM_201641	394430	Mm.300095	NM_201641	ENSMUSG00000090165	Ugt1a10	A13|Ugt1a13	UDP glycosyltransferase 1 family, polypeptide A10	protein-coding	0.005000	0.378109	
mm_82172.1	chr9	123850227	123850427	+	1	NA	NA	NA	1334	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.000000	0.437811	
mm_82399.1	chr9	14751866	14752066	-	1	NA	NA	NA	156	NM_010242	14345	Mm.63450	NM_010242	ENSMUSG00000049307	Fut4	AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1	fucosyltransferase 4	protein-coding	0.130000	0.736318	
mm_58635.1	chr7	5097166	5097366	+	1	NA	NA	NA	17031	NM_001252454	13854	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0.035000	0.641791	
mm_103977.1	chr11	84823499	84823699	-	1	NA	NA	NA	-4084	NM_145433	217038	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik|ENSMUSG00000054212	mitochondrial rRNA methyltransferase 1	protein-coding	0.030000	0.616915	
mm_76043.1	chr8	77517818	77518018	-	1	NA	NA	NA	-11	NM_030113	78514	Mm.165974	NM_030113	ENSMUSG00000037148	Arhgap10	A930033B01Rik|PSGAP-m|PSGAP-s	Rho GTPase activating protein 10	protein-coding	0.145000	0.815920	
mm_67501.1	chr7	80778750	80778950	-	1	NA	NA	NA	24481	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.015000	0.497512	
mm_45321.1	chr5	65479730	65479930	-	1	NA	NA	NA	13005	NM_133697	68552	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.010000	0.502488	
mm_63304.1	chr7	126824024	126824224	+	1	NA	NA	NA	-529	NM_001146347	68952	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0.035000	0.616915	
mm_23916.1	chr3	83046551	83046751	+	1	NA	NA	NA	3212	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.025000	0.477612	
mm_87195.1	chr10	39531765	39531965	+	1	NA	NA	NA	-81069	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.005000	0.303483	-89(AGCCATAAAAAG,-,0.00),-87(CCATAAAAAGAG,+,0.00)
mm_15401.1	chr2	156730569	156730769	+	1	NA	NA	NA	9390	NM_001042487	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.015000	0.497512	-78(CCCTTAAGGGAC,+,0.00)
mm_171482.1	chr4	145868784	145868984	+	1	NA	NA	NA	31665	NR_033612	236069	Mm.276881	NR_033612	ENSMUSG00000096233	Gm13238	OTTMUSG00000011065	carnitine deficiency-associated gene expressed in ventricle 3 pseudogene	pseudo	0.010000	0.552239	
mm_170622.1	chr19	6855190	6855390	-	1	NA	NA	NA	2921	NM_001081291	78317	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.030000	0.592040	
mm_170108.1	chr17	39844700	39844900	+	1	NA	NA	NA	1803	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.120000	0.711443	
mm_94358.1	chr11	4986824	4987024	+	1	NA	NA	NA	100	NM_007454	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.110000	0.716418	
mm_122112.1	chr14	30951172	30951372	-	1	NA	NA	NA	-105	NM_001308328	23955	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	0.085000	0.552239	
mm_145123.1	chr18	44380719	44380919	+	1	NA	NA	NA	319	NM_027490	70640	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0.060000	0.646766	
mm_76309.1	chr8	84642744	84642944	-	1	NA	NA	NA	20008	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.005000	0.542289	87(GTCTTTAAAGAG,+,0.00),87(GTCTTTAAAGAG,-,0.00),89(CTTTAAAGAGAG,+,0.00)
mm_80106.1	chr9	70398762	70398962	+	1	NA	NA	NA	6891	NR_049200	100885839		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0.035000	0.562189	
mm_98014.1	chr11	84870791	84870991	+	1	NA	NA	NA	-32	NR_131197	102635561	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	0.115000	0.716418	
mm_136420.1	chr16	93971015	93971215	-	1	NA	NA	NA	37722	NM_019500	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.035000	0.577114	
mm_143881.1	chr17	84273024	84273224	-	1	NA	NA	NA	-85177	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.005000	0.447761	
mm_29491.1	chr3	115887785	115887985	-	1	NA	NA	NA	174	NR_027894	68161	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.070000	0.592040	
mm_26878.1	chr3	17785211	17785411	-	1	NA	NA	NA	-4610	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.020000	0.507463	
mm_18502.1	chr2	62610509	62610709	-	1	NA	NA	NA	35646	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.010000	0.417910	
mm_77153.1	chr8	111686509	111686709	-	1	NA	NA	NA	3065	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.020000	0.532338	
mm_32702.1	chr4	116075349	116075549	+	1	NA	NA	NA	180	NM_153521	230654	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	0.115000	0.721393	
mm_115430.1	chr13	117249340	117249540	+	1	NA	NA	NA	28867	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.025000	0.417910	
mm_8192.1	chr1	138102746	138102946	-	1	NA	NA	NA	72280	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.303483	
mm_25254.1	chr3	104656992	104657192	+	1	NA	NA	NA	18428	NM_009196	20501	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.000000	0.333333	
mm_30442.1	chr3	153650161	153650361	-	1	NA	NA	NA	74872	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.005000	0.432836	
mm_50502.1	chr6	49036406	49036606	+	1	NA	NA	NA	-12	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.020000	0.477612	-98(CTCCCTTTAAGC,-,0.00)
mm_127753.1	chr15	103502891	103503091	+	1	NA	NA	NA	-43	NM_008800	18574	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.115000	0.711443	
mm_102483.1	chr11	60199336	60199536	-	1	NA	NA	NA	1181	NR_105886	102465555		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	0.010000	0.512438	
mm_77187.1	chr8	111854217	111854417	-	1	NA	NA	NA	-7	NM_011801	23837	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	0.065000	0.621891	
mm_45494.1	chr5	72159694	72159894	-	1	NA	NA	NA	8389	NM_178599	27784	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.015000	0.507463	
mm_45619.1	chr5	75933565	75933765	-	1	NA	NA	NA	44763	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.035000	0.547264	
mm_144732.1	chr18	35562071	35562271	+	1	NA	NA	NA	13	NM_010771	17184	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0.120000	0.691542	
mm_52170.1	chr6	99095626	99095826	+	1	NA	NA	NA	-67428	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.050000	0.512438	
mm_112933.1	chr13	20966570	20966770	+	1	NA	NA	NA	106629	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.005000	0.412935	20(CCTCATATAGGA,+,0.00)
mm_129410.1	chr15	78305554	78305754	-	1	NA	NA	NA	67	NM_007781	12984	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	0.015000	0.537313	
mm_29710.1	chr3	123672290	123672490	-	1	NA	NA	NA	87	NM_031186	83398	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	0.005000	0.412935	
mm_162522.1	chr1	157363000	157363200	+	1	NA	NA	NA	-49252	NR_027984	69953	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	0.015000	0.323383	
mm_84587.1	chr9	70032536	70032736	-	1	NA	NA	NA	5452	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.005000	0.432836	
mm_41947.1	chr5	105731997	105732197	+	1	NA	NA	NA	31287	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.105000	0.741294	
mm_84785.1	chr9	76567029	76567229	-	1	NA	NA	NA	-21325	NM_001045518	208994	Mm.256929	NM_001045518	ENSMUSG00000032358	Fam83b	C530008M07Rik|Gm516	family with sequence similarity 83, member B	protein-coding	0.125000	0.761194	
mm_102744.1	chr11	67254472	67254672	-	1	NA	NA	NA	16760	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.010000	0.457711	
mm_149484.1	chr19	11809918	11810118	+	1	NA	NA	NA	9385	NM_001286543	20908	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.000000	0.402985	-8(TCCTTTAGAGTC,+,0.00)
mm_164689.1	chr17	47728651	47728851	+	1	NA	NA	NA	1909	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.015000	0.517413	
mm_112714.1	chr13	19184914	19185114	+	1	NA	NA	NA	210799	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.487562	
mm_15801.1	chr2	164460969	164461169	+	1	NA	NA	NA	98	NM_025575	66460	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0.120000	0.716418	
mm_51516.1	chr6	83142308	83142508	+	1	NA	NA	NA	5324	NM_009106	20166	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0.140000	0.731343	
mm_5075.1	chr1	3667736	3667936	-	1	NA	NA	NA	3662	NM_001011874	497097	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.000000	0.328358	-82(GTGTTTTAAAGC,-,0.00),-54(ATGTTTTAAAGG,-,0.00),-52(GTTTTAAAGGGC,+,0.00)
mm_43590.1	chr5	137758015	137758215	+	1	NA	NA	NA	12146	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.020000	0.611940	
mm_71759.1	chr8	66386200	66386400	+	1	NA	NA	NA	-1	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.000000	0.407960	
mm_34157.1	chr4	139430997	139431197	+	1	NA	NA	NA	50438	NM_001160319	69116	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0.010000	0.467662	
mm_155109.1	chrX	48519163	48519363	+	1	NA	NA	NA	-22	NM_011228	19337	Mm.2015	NM_011228	ENSMUSG00000031104	Rab33a	Rabs10	RAB33A, member RAS oncogene family	protein-coding	0.015000	0.577114	
mm_86139.1	chr9	116860015	116860215	-	1	NA	NA	NA	392368	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.010000	0.402985	
mm_85686.1	chr9	107985816	107986016	-	1	NA	NA	NA	0	NM_026597	68176	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0.080000	0.711443	
mm_91572.1	chr10	40128141	40128341	-	1	NA	NA	NA	14013	NM_028247	72472	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.000000	0.432836	
mm_136000.1	chr16	75399642	75399842	-	1	NA	NA	NA	186319	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.010000	0.318408	
mm_113268.1	chr13	28953817	28954017	+	1	NA	NA	NA	-235	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.080000	0.542289	-34(CTTTTTAAAAGG,+,0.00),-34(CTTTTTAAAAGG,-,0.00),-33(TTTTTAAAAGGG,+,0.00)
mm_142163.1	chr17	36145665	36145865	-	1	NA	NA	NA	747	NR_033517	675325	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	0.135000	0.756219	
mm_83377.1	chr9	44526410	44526610	-	1	NA	NA	NA	-89	NM_007551	12145	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	0.020000	0.497512	
mm_101381.1	chr11	23818774	23818974	-	1	NA	NA	NA	-47904	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.005000	0.502488	
mm_9838.1	chr1	184034163	184034363	-	1	NA	NA	NA	-198	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.075000	0.606965	
mm_145511.1	chr18	60392167	60392367	+	1	NA	NA	NA	16238	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.000000	0.417910	
mm_148728.1	chr19	5877717	5877917	+	1	NA	NA	NA	-649	NM_134154	107375	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0.020000	0.497512	12(GTTTTTAAAGAA,+,0.00)
mm_4789.1	chr1	184372146	184372346	+	1	NA	NA	NA	185445	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.005000	0.318408	
mm_37721.1	chr4	129558156	129558356	-	1	NA	NA	NA	116	NM_001162432	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.030000	0.552239	
mm_29421.1	chr3	108976477	108976677	-	1	NA	NA	NA	36020	NM_001078646	66715	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0.000000	0.363184	
mm_10736.1	chr2	23068173	23068373	+	1	NA	NA	NA	72	NM_001102436	74159	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.070000	0.542289	
mm_1384.1	chr1	66944721	66944921	+	1	NA	NA	NA	235	NM_021285	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.045000	0.487562	
mm_119706.1	chr14	53800725	53800925	+	1	NA	NA	NA	453104	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.427861	
mm_67670.1	chr7	88299376	88299576	-	1	NA	NA	NA	21391	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.010000	0.407960	-57(CCTTATATGCAG,+,0.00)
mm_78181.1	chr9	21200633	21200833	+	1	NA	NA	NA	4028	NM_019798	18577	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.005000	0.542289	
mm_87630.1	chr10	58323430	58323630	+	1	NA	NA	NA	64	NM_026148	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.125000	0.736318	
mm_173017.1	chrX	100865816	100866016	-	1	NA	NA	NA	88645	NM_001177780	53310	Mm.4615	NM_016747	ENSMUSG00000000881	Dlg3	Dlgh3|SAP102|mKIAA1232	discs, large homolog 3 (Drosophila)	protein-coding	0.025000	0.457711	
mm_120427.1	chr14	65666337	65666537	+	1	NA	NA	NA	34	NM_001168318	71145	Mm.83840	NM_028903	ENSMUSG00000022032	Scara5	4932433F15Rik|4933425F03Rik|AV278087|Tesr	scavenger receptor class A, member 5	protein-coding	0.030000	0.477612	
mm_42132.1	chr5	111116283	111116483	+	1	NA	NA	NA	112239	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.000000	0.378109	
mm_38249.1	chr4	136676039	136676239	-	1	NA	NA	NA	53518	NM_001243262	242707	Mm.448979	NM_001243262	ENSMUSG00000070683	Lactbl1	-	lactamase, beta-like 1	protein-coding	0.015000	0.452736	
mm_82055.1	chr9	122681795	122681995	+	1	NA	NA	NA	-981	NR_029819	387156		NR_029819	ENSMUSG00000065414	Mir138-1	Mirn138|Mirn138-1|mir-138-1	microRNA 138-1	ncRNA	0.005000	0.507463	
mm_136600.1	chr17	5134836	5135036	+	1	NA	NA	NA	139862	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.010000	0.378109	
mm_33709.1	chr4	133813304	133813504	+	1	NA	NA	NA	-59793	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.115000	0.726368	
mm_11964.1	chr2	53191984	53192184	+	1	NA	NA	NA	0	NM_022989	65103	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	0.125000	0.681592	
mm_164962.1	chr19	5800084	5800284	-	1	NA	NA	NA	2488	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.020000	0.522388	
mm_43084.1	chr5	124450069	124450269	+	1	NA	NA	NA	3465	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.020000	0.442786	-62(TACTTTAAAAAG,-,0.00)
mm_137264.1	chr17	24669606	24669806	+	1	NA	NA	NA	-46	NM_183149	213753	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	0.155000	0.796020	
mm_100756.1	chr11	4346818	4347018	-	1	NA	NA	NA	80122	NM_001039537	16878	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.005000	0.502488	
mm_78061.1	chr9	14903414	14903614	+	1	NA	NA	NA	437	NM_176807	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.010000	0.537313	
mm_112660.1	chr13	16026891	16027091	+	1	NA	NA	NA	15140	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.015000	0.512438	
mm_134840.1	chr16	26371713	26371913	-	1	NA	NA	NA	26	NM_016674	12737	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding	0.060000	0.621891	
mm_98923.1	chr11	98348602	98348802	+	1	NA	NA	NA	296	NM_144828	19049	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0.050000	0.646766	
mm_9124.1	chr1	170434177	170434377	-	1	NA	NA	NA	122833	NM_027528	70729	Mm.487078	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.010000	0.427861	
mm_104649.1	chr11	97573932	97574132	-	1	NA	NA	NA	1094	NM_018873	56013	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.060000	0.746269	
mm_46029.1	chr5	91402913	91403113	-	1	NA	NA	NA	-19	NM_007568	12223	Mm.2024	NM_007568	ENSMUSG00000082361	Btc	Bcn	betacellulin, epidermal growth factor family member	protein-coding	0.025000	0.631841	
mm_9225.1	chr1	171237502	171237702	-	1	NA	NA	NA	-3253	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.020000	0.487562	
mm_170457.1	chr18	89952148	89952348	-	1	NA	NA	NA	-183112	NM_001039173	623279	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0.035000	0.502488	
mm_62839.1	chr7	114040946	114041146	+	1	NA	NA	NA	76735	NM_025846	66922	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.005000	0.482587	
mm_26439.1	chr3	142623665	142623865	+	1	NA	NA	NA	181	NR_105802	102465200		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.015000	0.527363	
mm_112647.1	chr13	16017293	16017493	+	1	NA	NA	NA	5542	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.030000	0.572139	
mm_143964.1	chr17	87203267	87203467	-	1	NA	NA	NA	-8425	NR_046016	399626	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	0.010000	0.547264	-32(CTTTAAATAGGA,+,0.00)
mm_137237.1	chr17	24426589	24426789	+	1	NA	NA	NA	6	NM_010023	13177	Mm.291743	NM_010023	ENSMUSG00000024132	Eci1	Dci|eci	enoyl-Coenzyme A delta isomerase 1	protein-coding	0.085000	0.701493	
mm_18008.1	chr2	38281894	38282094	-	1	NA	NA	NA	5390	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.005000	0.328358	-45(TCTTTTAAACTA,+,0.00)
mm_119703.1	chr14	53776844	53777044	+	1	NA	NA	NA	476985	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.537313	
mm_162394.1	chr1	80412681	80412881	+	1	NA	NA	NA	-33151	NR_040460	72208	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	Jr3	RIKEN cDNA 1700016L21 gene	ncRNA	0.005000	0.502488	
mm_26840.1	chr3	14611107	14611307	-	1	NA	NA	NA	14	NM_001347206	69126	Mm.389020	NM_001099674	ENSMUSG00000078784	1810022K09Rik	AI746582|AL023036	RIKEN cDNA 1810022K09 gene	protein-coding	0.055000	0.587065	
mm_153756.1	chr19	45338219	45338419	-	1	NA	NA	NA	-25415	NM_001286466	12234	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.020000	0.497512	
mm_42058.1	chr5	108694165	108694365	+	1	NA	NA	NA	36	NM_054071	116701	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0.150000	0.771144	
mm_111975.1	chr12	110023761	110023961	-	1	NA	NA	NA	134212	NR_045466	67280	Mm.390495	NR_045466		3110009F21Rik	-	RIKEN cDNA 3110009F21 gene	ncRNA	0.010000	0.557214	
mm_23451.1	chr3	60031688	60031888	+	1	NA	NA	NA	0	NM_023383	67758	Mm.24547	NM_023383	ENSMUSG00000027761	Aadac	5033417E09Rik|AI265437|Aada	arylacetamide deacetylase (esterase)	protein-coding	0.010000	0.378109	70(CTTTATATACCG,+,0.00)
mm_119966.1	chr14	55478833	55479033	+	1	NA	NA	NA	175	NM_030686	28200	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	0.050000	0.601990	
mm_75555.1	chr8	57778253	57778453	-	1	NA	NA	NA	-125298	NM_144731	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0.020000	0.422886	50(CACTTTTTAAGA,-,0.00)
mm_168491.1	chr1	150232704	150232904	+	1	NA	NA	NA	-67856	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.050000	0.646766	
mm_144818.1	chr18	36289929	36290129	+	1	NA	NA	NA	8867	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.005000	0.402985	
mm_41089.1	chr5	87694406	87694606	+	1	NA	NA	NA	4919	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.010000	0.422886	
mm_93580.1	chr10	116918828	116919028	-	1	NA	NA	NA	-22049	NM_001033333	237558	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	0.045000	0.537313	61(CCCCTTTAAAAG,-,0.00),62(CCCTTTAAAAGG,+,0.00),62(CCCTTTAAAAGG,-,0.00),63(CCTTTAAAAGGG,+,0.00),64(CTTTAAAAGGGG,+,0.00)
mm_3601.1	chr1	151571387	151571587	+	1	NA	NA	NA	114	NM_022018	63913	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.070000	0.646766	
mm_2936.1	chr1	132298951	132299151	+	1	NA	NA	NA	425	NM_144810	213417	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0.115000	0.731343	
mm_85277.1	chr9	99499398	99499598	-	1	NA	NA	NA	29077	NR_028123	69797	Mm.307159	NR_028123	ENSMUSG00000046242	1600029I14Rik	-	RIKEN cDNA 1600029I14 gene	ncRNA	0.015000	0.432836	
mm_117241.1	chr13	64320289	64320489	-	1	NA	NA	NA	-7679	NM_025370	66129	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	0.020000	0.487562	
mm_71886.1	chr8	69822477	69822677	+	1	NA	NA	NA	12	NM_020028	53978	Mm.23253	NM_020028	ENSMUSG00000031861	Lpar2	Edg4|IPA2|LPA2	lysophosphatidic acid receptor 2	protein-coding	0.075000	0.686567	
mm_138369.1	chr17	35001030	35001230	+	1	NA	NA	NA	223	NM_011690	22321	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.135000	0.761194	
mm_72435.1	chr8	83085066	83085266	+	1	NA	NA	NA	-80186	NM_001111304	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.010000	0.487562	
mm_84872.1	chr9	79698630	79698830	-	1	NA	NA	NA	19992	NM_001290308	12816	Mm.3819	NM_007730	ENSMUSG00000032332	Col12a1	-	collagen, type XII, alpha 1	protein-coding	0.000000	0.278607	
mm_107249.1	chr12	27336271	27336471	+	1	NA	NA	NA	6347	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.005000	0.402985	
mm_84730.1	chr9	75038553	75038753	-	1	NA	NA	NA	921	NM_021548	59046	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	0.020000	0.417910	
mm_56301.1	chr6	91758239	91758439	-	1	NA	NA	NA	49054	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.010000	0.547264	
mm_128517.1	chr15	53346091	53346291	-	1	NA	NA	NA	-8	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.130000	0.661692	
mm_5473.1	chr1	36565512	36565712	-	1	NA	NA	NA	-7231	NM_001126047	20353	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.015000	0.343284	
mm_160477.1	chr8	120566335	120566535	+	1	NA	NA	NA	22640	NM_178856	272551	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.050000	0.636816	
mm_41046.1	chr5	86093150	86093350	+	1	NA	NA	NA	21504	NM_001310639	56792	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.005000	0.328358	
mm_25728.1	chr3	122730157	122730357	+	1	NA	NA	NA	1099	NM_153422	242202	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	0.125000	0.716418	
mm_25291.1	chr3	105870790	105870990	+	1	NA	NA	NA	32	NM_001174169	69296	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik	transmembrane and immunoglobulin domain containing 3	protein-coding	0.015000	0.482587	
mm_76045.1	chr8	77596937	77597137	-	1	NA	NA	NA	13616	NM_145599	234463	Mm.273578	NM_145599	ENSMUSG00000031617	Tmem184c	8430433H16Rik|AI645453|AL033298|BC004056|Tmem34	transmembrane protein 184C	protein-coding	0.005000	0.437811	
mm_165063.1	chr19	42307030	42307230	-	1	NA	NA	NA	-26960	NR_037246	100526549		NR_037246	ENSMUSG00000093234	Mir3085	mir-3085|mmu-mir-3085	microRNA 3085	ncRNA	0.030000	0.606965	
mm_102212.1	chr11	54907159	54907359	-	1	NA	NA	NA	4405	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.015000	0.462687	46(CTGCTTAAAAGG,-,0.00),48(GCTTAAAAGGAA,+,0.00)
mm_47766.1	chr5	131538096	131538296	-	1	NA	NA	NA	-230674	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.110000	0.736318	
mm_114601.1	chr13	75770899	75771099	+	1	NA	NA	NA	63515	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.000000	0.378109	
mm_130311.1	chr15	97055797	97055997	-	1	NA	NA	NA	59	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.040000	0.487562	
mm_103077.1	chr11	69895409	69895609	-	1	NA	NA	NA	30	NM_153788	216859	Mm.288671	NM_153788	ENSMUSG00000001588	Acap1	Centb1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein-coding	0.010000	0.601990	72(CCATTAATACCC,+,0.00)
mm_121347.1	chr14	116925112	116925312	+	1	NA	NA	NA	-85	NM_001079844	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.030000	0.532338	
mm_165661.1	chr3	87906064	87906264	+	1	NA	NA	NA	-157	NM_008231	15191	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0.080000	0.736318	
mm_84698.1	chr9	72491870	72492070	-	1	NA	NA	NA	-11	NM_009359	21778	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	0.080000	0.636816	
mm_169262.1	chr13	83524789	83524989	+	1	NA	NA	NA	146	NM_001347580	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.070000	0.577114	
mm_135136.1	chr16	35845304	35845504	-	1	NA	NA	NA	25978	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.000000	0.402985	
mm_18948.1	chr2	76778424	76778624	-	1	NA	NA	NA	103209	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.487562	
mm_150901.1	chr19	45575015	45575215	+	1	NA	NA	NA	14500	NM_172639	226162	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	5330431N19Rik|Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.035000	0.601990	
mm_96556.1	chr11	68901550	68901750	+	1	NA	NA	NA	61	NR_003373	100034726	Mm.3229	NR_003373	ENSMUSG00000062353	Gm15772	ENSMUSG00000062353|OTTMUSG00000026108	ribosomal protein L26 pseudogene	pseudo	0.110000	0.646766	
mm_31743.1	chr4	63215463	63215663	+	1	NA	NA	NA	151	NM_025685	373864	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0.100000	0.666667	
mm_58937.1	chr7	18067081	18067281	+	1	NA	NA	NA	1252	NM_001162523	67315	Mm.46089	NM_026087	ENSMUSG00000030366	Ceacam12	1600031J20Rik|Ceacam12-C1|Ceacam12-C3|Ceacam12C1|Ceacam12C3	carcinoembryonic antigen-related cell adhesion molecule 12	protein-coding	0.000000	0.427861	
mm_100887.1	chr11	6029133	6029333	-	1	NA	NA	NA	36515	NM_001174054	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	0.015000	0.522388	39(CCCTCTTAAAGC,-,0.00),40(CCTCTTAAAGCT,+,0.00)
mm_148486.1	chr19	4150404	4150604	+	1	NA	NA	NA	1841	NM_011778	23789	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0.035000	0.547264	
mm_143296.1	chr17	65923414	65923614	-	1	NA	NA	NA	27673	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.020000	0.368159	
mm_67720.1	chr7	90046895	90047095	-	1	NA	NA	NA	17836	NR_110364	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	0.010000	0.407960	-7(CTCTTTATGGTG,+,0.00)
mm_172260.1	chr6	73641891	73642091	-	1	NA	NA	NA	-170970	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.010000	0.402985	-37(CTCTTTATAAGC,-,0.00),-35(CTTTATAAGCGC,+,0.00)
mm_171277.1	chr3	88832386	88832586	-	1	NA	NA	NA	1	NR_015498	319830	Mm.400394	NR_015498		1500004A13Rik	5430404N14Rik|BB132176	RIKEN cDNA 1500004A13 gene	ncRNA	0.030000	0.577114	
mm_47089.1	chr5	117388900	117389100	-	1	NA	NA	NA	23	NM_028128	72151	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	0.135000	0.756219	
mm_100607.1	chr11	121287883	121288083	+	1	NA	NA	NA	27996	NM_001080932	68837	Mm.209750	NM_001080932	ENSMUSG00000039275	Foxk2	1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1	forkhead box K2	protein-coding	0.025000	0.522388	-83(TTCCTTTAAAGG,-,0.00),-82(TCCTTTAAAGGG,+,0.00),-82(TCCTTTAAAGGG,-,0.00),-81(CCTTTAAAGGGC,+,0.00)
mm_140169.1	chr17	80307289	80307489	+	1	NA	NA	NA	-18	NM_001145452	381112	Mm.360004	NM_001145452	ENSMUSG00000054901	Arhgef33	Gm941	Rho guanine nucleotide exchange factor (GEF) 33	protein-coding	0.000000	0.447761	-17(TCATTTAAAAGC,-,0.00)
mm_159902.1	chr6	39489042	39489242	-	1	NA	NA	NA	68692	NM_172477	209773	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.030000	0.512438	
mm_151853.1	chr19	5796458	5796658	-	1	NA	NA	NA	-577	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.015000	0.502488	-71(GTTTTTATAGCA,+,0.00)
mm_76069.1	chr8	78508793	78508993	-	1	NA	NA	NA	35	NM_001252089	19656	Mm.24718	NM_009033	ENSMUSG00000037070	Rbmxl1	Hnrpg|Rbmx|Rbmxrt	RNA binding motif protein, X-linked like-1	protein-coding	0.155000	0.666667	
mm_69769.1	chr7	141011264	141011464	-	1	NA	NA	NA	-620	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.005000	0.567164	
mm_118914.1	chr14	26693158	26693358	+	1	NA	NA	NA	-23412	NM_178668	211948	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	0.015000	0.402985	
mm_96081.1	chr11	60104925	60105125	+	1	NA	NA	NA	12	NM_009021	19377	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.120000	0.731343	
mm_91601.1	chr10	41072200	41072400	-	1	NA	NA	NA	-716	NM_199058	140741	Mm.290693	NM_199058	ENSMUSG00000046922	Gpr6	AI852874|Gm233	G protein-coupled receptor 6	protein-coding	0.075000	0.636816	
mm_28851.1	chr3	96831965	96832165	-	1	NA	NA	NA	5	NR_015596	67583	Mm.444284	NR_015596	ENSMUSG00000087223	4930442L01Rik	-	RIKEN cDNA 4930442L01 gene	ncRNA	0.020000	0.492537	-19(CCTTTAAGACGT,+,0.00)
mm_27208.1	chr3	35754641	35754841	-	1	NA	NA	NA	603	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.060000	0.562189	
mm_129517.1	chr15	79108515	79108715	-	1	NA	NA	NA	-368	NM_177461	27008	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	0.015000	0.582090	
mm_35648.1	chr4	43523678	43523878	-	1	NA	NA	NA	-224	NM_001277875	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.055000	0.671642	
mm_132022.1	chr16	26581644	26581844	+	1	NA	NA	NA	39	NM_008364	16180	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	0.075000	0.641791	
mm_147945.1	chr18	66291990	66292190	-	1	NA	NA	NA	-252	NM_178793	320924	Mm.442049	NM_178793	ENSMUSG00000046318	Ccbe1	4933426F18Rik|9430093N24Rik|mKIAA1983	collagen and calcium binding EGF domains 1	protein-coding	0.025000	0.582090	
mm_6858.1	chr1	84262671	84262871	-	1	NA	NA	NA	21874	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.010000	0.368159	
mm_103414.1	chr11	75470676	75470876	-	1	NA	NA	NA	2726	NM_027249	380712	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	0.010000	0.452736	
mm_33640.1	chr4	132974110	132974310	+	1	NA	NA	NA	115	NM_010208	14191	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.045000	0.626866	
mm_172089.1	chr6	18157098	18157298	-	1	NA	NA	NA	-13489	NM_021050	12638	Mm.15621	NM_021050	ENSMUSG00000041301	Cftr	AW495489|Abcc7	cystic fibrosis transmembrane conductance regulator	protein-coding	0.045000	0.462687	
mm_143535.1	chr17	73950081	73950281	-	1	NA	NA	NA	15	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.040000	0.507463	
mm_157627.1	chrX	56597920	56598120	-	1	NA	NA	NA	-101	NM_146234	236792	Mm.291824	NM_146234	ENSMUSG00000061273	Mmgt1	9630048L06Rik|BC032271|Emc5|Mir5116|Tmem32|mir-5116	membrane magnesium transporter 1	protein-coding	0.105000	0.666667	
mm_73072.1	chr8	94446233	94446433	+	1	NA	NA	NA	-11230	NR_015514	320377	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0.005000	0.368159	
mm_79492.1	chr9	57076265	57076465	+	1	NA	NA	NA	-11	NM_001110350	20466	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	0.080000	0.631841	
mm_49929.1	chr6	39419732	39419932	+	1	NA	NA	NA	-56	NM_001311109	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.140000	0.746269	
mm_137624.1	chr17	28313447	28313647	+	1	NA	NA	NA	17	NM_001163820	72775	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	0.110000	0.681592	
mm_68763.1	chr7	121707322	121707522	-	1	NA	NA	NA	-169	NM_001033173	76179	Mm.122538	NM_001033173	ENSMUSG00000063317	Usp31	6330567E21Rik|mKIAA1203	ubiquitin specific peptidase 31	protein-coding	0.140000	0.736318	
mm_120842.1	chr14	75195793	75195993	+	1	NA	NA	NA	-46394	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.010000	0.492537	
mm_129559.1	chr15	79534273	79534473	-	1	NA	NA	NA	-1456	NM_152806	67040	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.005000	0.462687	
mm_93363.1	chr10	103236204	103236404	-	1	NA	NA	NA	18	NM_001163559	74978	Mm.483817	NM_029134	ENSMUSG00000019892	Lrriq1	4930503E15Rik|Gm1557	leucine-rich repeats and IQ motif containing 1	protein-coding	0.040000	0.567164	
mm_71177.1	chr8	40752136	40752336	+	1	NA	NA	NA	28	NM_011781	23793	Mm.483208	NM_011781	ENSMUSG00000071937	Adam25	-	a disintegrin and metallopeptidase domain 25 (testase 2)	protein-coding	0.000000	0.348259	-78(CCCTATAAGAGA,-,0.00)
mm_33365.1	chr4	129512459	129512659	+	1	NA	NA	NA	-1022	NM_010807	17357	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0.010000	0.487562	
mm_125093.1	chr15	27570275	27570475	+	1	NA	NA	NA	-1119	NR_106065	102466808		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0.005000	0.373134	
mm_122599.1	chr14	50987555	50987755	-	1	NA	NA	NA	-20096	NM_001162863	75019	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	0.010000	0.507463	
mm_170678.1	chr2	121956321	121956521	+	1	NA	NA	NA	-329	NM_008545	17147	Mm.389349	NM_008545	ENSMUSG00000074881	Mageb3	Mage-b3|Mage-ps1|Mage-rs3|Smage3	melanoma antigen, family B, 3	protein-coding	0.085000	0.691542	
mm_49102.1	chr6	8209140	8209340	+	1	NA	NA	NA	13	NM_145374	252875	Mm.257151	NM_145374	ENSMUSG00000042447	Mios	C81488	missing oocyte, meiosis regulator, homolog (Drosophila)	protein-coding	0.145000	0.781095	
mm_33878.1	chr4	136172312	136172512	+	1	NA	NA	NA	138	NM_177733	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.065000	0.492537	
mm_91419.1	chr10	32552416	32552616	-	1	NA	NA	NA	337399	NM_001013411	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding	0.000000	0.268657	
mm_120142.1	chr14	60378167	60378367	+	1	NA	NA	NA	-19	NM_028113	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.145000	0.731343	
mm_106904.1	chr12	8015277	8015477	+	1	NA	NA	NA	37700	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.442786	
mm_63965.1	chr7	139944450	139944650	+	1	NA	NA	NA	694	NM_009482	22286	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	0.085000	0.611940	
mm_138925.1	chr17	43801208	43801408	+	1	NA	NA	NA	-543	NM_207649	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.025000	0.562189	
mm_71063.1	chr8	33990168	33990368	+	1	NA	NA	NA	-60405	NM_001042675	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.040000	0.577114	
mm_43662.1	chr5	138754391	138754591	+	1	NA	NA	NA	-590	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.110000	0.716418	
mm_99432.1	chr11	102430284	102430484	+	1	NA	NA	NA	62	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.030000	0.507463	-79(CCCTAGAAATGG,-,0.00)
mm_145935.1	chr18	67289115	67289315	+	1	NA	NA	NA	-8	NM_053261	114663	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0.090000	0.691542	
mm_81168.1	chr9	107299850	107300050	+	1	NA	NA	NA	3291	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.015000	0.577114	
mm_115959.1	chr13	23762285	23762485	-	1	NA	NA	NA	1	NM_013550	360198	Mm.221301	NM_013550	ENSMUSG00000069265	Hist1h3a	-	histone cluster 1, H3a	protein-coding	0.040000	0.472637	
mm_22718.1	chr3	19311357	19311557	+	1	NA	NA	NA	-135	NM_001122759	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.200000	0.815920	
mm_12783.1	chr2	79330754	79330954	+	1	NA	NA	NA	75428	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.000000	0.328358	
mm_120648.1	chr14	70530576	70530776	+	1	NA	NA	NA	-145	NM_145219	213469	Mm.41708	NM_145219	ENSMUSG00000033595	Lgi3	AI841179|AW049851	leucine-rich repeat LGI family, member 3	protein-coding	0.040000	0.577114	
mm_168673.1	chr1	19372185	19372385	+	1	NA	NA	NA	160231	NM_001025305	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.025000	0.437811	
mm_68004.1	chr7	100938338	100938538	-	1	NA	NA	NA	-6277	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.055000	0.616915	
mm_133086.1	chr16	62814626	62814826	+	1	NA	NA	NA	50	NM_026588	68159	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	0.020000	0.447761	
mm_98977.1	chr11	98700251	98700451	+	1	NA	NA	NA	-962	NM_009971	12985	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.010000	0.537313	-40(CCCTTTCTGGCC,+,0.00)
mm_109751.1	chr12	117688622	117688822	+	1	NA	NA	NA	-155139	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.055000	0.641791	
mm_122426.1	chr14	44859276	44859476	-	1	NA	NA	NA	-1	NM_008962	19214	Mm.5105	NM_008962	ENSMUSG00000071489	Ptgdr	DP|PGD	prostaglandin D receptor	protein-coding	0.020000	0.601990	
mm_153638.1	chr19	44069662	44069862	-	1	NA	NA	NA	13	NM_001164359	226144	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	0.155000	0.771144	
mm_140232.1	chr17	84100750	84100950	+	1	NA	NA	NA	22190	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.030000	0.557214	
mm_168496.1	chr1	151571318	151571518	+	1	NA	NA	NA	45	NM_022018	63913	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.075000	0.666667	
mm_6358.1	chr1	71938517	71938717	-	1	NA	NA	NA	50505	NR_027659	667931	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	0.005000	0.447761	
mm_168951.1	chr12	77553650	77553850	+	1	NA	NA	NA	143609	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.035000	0.487562	
mm_34589.1	chr4	150187363	150187563	+	1	NA	NA	NA	13672	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.025000	0.447761	
mm_52499.1	chr6	115138416	115138616	+	1	NA	NA	NA	3614	NM_001111015	20965	Mm.441431	NM_013681	ENSMUSG00000009394	Syn2	2900074L19Rik|AI836018|AI841723	synapsin II	protein-coding	0.010000	0.368159	
mm_30166.1	chr3	144193913	144194113	-	1	NA	NA	NA	8319	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.020000	0.452736	
mm_112107.1	chr12	112785790	112785990	-	1	NA	NA	NA	-23085	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.005000	0.452736	
mm_111700.1	chr12	103659800	103660000	-	1	NA	NA	NA	-2682	NM_007618	12401	Mm.290079	NM_007618	ENSMUSG00000060807	Serpina6	Cbg	serine (or cysteine) peptidase inhibitor, clade A, member 6	protein-coding	0.005000	0.487562	
mm_127015.1	chr15	95959057	95959257	+	1	NA	NA	NA	120396	NR_126493	402773	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0.030000	0.482587	
mm_152242.1	chr19	8713772	8713972	-	1	NA	NA	NA	25	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.070000	0.631841	-66(CTCTTTAAGAGG,-,0.00),-65(TCTTTAAGAGGC,+,0.00)
mm_64577.1	chr7	144934013	144934213	+	1	NA	NA	NA	-1978	NR_039539	100628615		NR_039539	ENSMUSG00000092633	Mir3962	mmu-mir-3962|mu-mir-3962	microRNA 3962	ncRNA	0.030000	0.557214	
mm_171045.1	chr2	99909628	99909828	-	1	NA	NA	NA	-1715020	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.010000	0.512438	
mm_33610.1	chr4	132588690	132588890	+	1	NA	NA	NA	24723	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.005000	0.442786	
mm_127972.1	chr15	12136574	12136774	-	1	NA	NA	NA	18823	NM_011767	22763	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.015000	0.482587	
mm_115048.1	chr13	100108062	100108262	+	1	NA	NA	NA	143	NM_011353	20365	Mm.286177	NM_011353	ENSMUSG00000021643	Serf1	4F5|Msmac1|m4F5	small EDRK-rich factor 1	protein-coding	0.115000	0.701493	
mm_11038.1	chr2	27006498	27006698	+	1	NA	NA	NA	-3328	NM_001243240	381356	Mm.150270	NM_029862	ENSMUSG00000015488	Cacfd1	5930434B04Rik|mFwe	calcium channel flower domain containing 1	protein-coding	0.010000	0.552239	
mm_117592.1	chr13	89742253	89742453	-	1	NA	NA	NA	159	NM_001081249	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.060000	0.592040	
mm_40922.1	chr5	75830469	75830669	+	1	NA	NA	NA	147859	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.010000	0.562189	
mm_20019.1	chr2	119325477	119325677	-	1	NA	NA	NA	-207	NM_019454	54485	Mm.143719	NM_019454	ENSMUSG00000027314	Dll4	Delta4	delta-like 4 (Drosophila)	protein-coding	0.070000	0.661692	
mm_162986.1	chr11	22990284	22990484	+	1	NA	NA	NA	-209	NM_009837	12464	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	0.030000	0.482587	
mm_68660.1	chr7	118740492	118740692	-	1	NA	NA	NA	321	NM_027815	71517	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	0.065000	0.522388	
mm_112844.1	chr13	20835590	20835790	+	1	NA	NA	NA	41577	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.313433	
mm_70048.1	chr7	142577982	142578182	-	1	NA	NA	NA	64	NR_130974	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.035000	0.641791	
mm_148062.1	chr18	72227841	72228041	-	1	NA	NA	NA	123128	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.015000	0.417910	
mm_116538.1	chr13	45922450	45922650	-	1	NA	NA	NA	42441	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.035000	0.407960	
mm_106394.1	chr11	118797619	118797819	-	1	NA	NA	NA	-36678	NM_001285438	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.000000	0.398010	
mm_173244.1	chrX	89338771	89338971	+	1	NA	NA	NA	70818	NM_008821	18630	Mm.3086	NM_008821	ENSMUSG00000035395	Pet2	PC231|PC326|Pex3	plasmacytoma expressed transcript 2	protein-coding	0.030000	0.507463	-30(GAGTATATAAGA,-,0.00)
mm_124631.1	chr15	4026554	4026754	+	1	NA	NA	NA	226	NM_024188	67041	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	0.125000	0.711443	
mm_145837.1	chr18	65442497	65442697	+	1	NA	NA	NA	11600	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.005000	0.417910	
mm_107896.1	chr12	70649982	70650182	+	1	NA	NA	NA	-175432	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.000000	0.432836	
mm_15866.1	chr2	164833697	164833897	+	1	NA	NA	NA	24	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.040000	0.557214	
mm_154302.1	chr19	61225327	61225527	-	1	NA	NA	NA	2991	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.100000	0.691542	
mm_135134.1	chr16	35844290	35844490	-	1	NA	NA	NA	26992	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.010000	0.378109	
mm_90999.1	chr10	14545086	14545286	-	1	NA	NA	NA	-150	NM_001002268	215798	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.140000	0.721393	
mm_56664.1	chr6	113531521	113531721	-	1	NA	NA	NA	17	NM_175101	66087	Mm.275989	NM_175101	ENSMUSG00000030286	Emc3	0610039A15Rik|AI225901|AW260416|Pob|Tmem111	ER membrane protein complex subunit 3	protein-coding	0.110000	0.651741	
mm_78524.1	chr9	34488728	34488928	+	1	NA	NA	NA	97	NM_001190911	67703	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kin of IRRE like 3 (Drosophila)	protein-coding	0.085000	0.611940	
mm_29668.1	chr3	122619618	122619818	-	1	NA	NA	NA	-4	NM_153118	214459	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	0.105000	0.766169	
mm_121046.1	chr14	80022464	80022664	+	1	NA	NA	NA	22262	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding	0.000000	0.383085	
mm_82729.1	chr9	25151596	25151796	-	1	NA	NA	NA	85	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.140000	0.781095	
mm_44965.1	chr5	36720716	36720916	-	1	NA	NA	NA	-24795	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.005000	0.412935	-33(CTATATATAGCC,+,0.00)
mm_3614.1	chr1	152399706	152399906	+	1	NA	NA	NA	-61	NM_177756	269132	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0.020000	0.502488	
mm_170162.1	chr1	75209387	75209587	-	1	NA	NA	NA	1291	NM_029010	74577	Mm.458319	NM_029010	ENSMUSG00000026200	Glb1l	4833408P15Rik	galactosidase, beta 1-like	protein-coding	0.045000	0.562189	
mm_138025.1	chr17	33912624	33912824	+	1	NA	NA	NA	3123	NM_001199733	13163	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0.040000	0.487562	
mm_137814.1	chr17	30011072	30011272	+	1	NA	NA	NA	6085	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.005000	0.273632	
mm_167053.1	chr7	84409916	84410116	-	1	NA	NA	NA	22	NM_007488	11864	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding	0.175000	0.825871	
mm_145533.1	chr18	60803763	60803963	+	1	NA	NA	NA	14	NM_010545	16149	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	0.025000	0.567164	-49(AGCTTTAAGAGG,-,0.00),-48(GCTTTAAGAGGT,+,0.00)
mm_105327.1	chr11	102897031	102897231	-	1	NA	NA	NA	69	NM_001131020	14580	Mm.1239	NM_010277	ENSMUSG00000020932	Gfap	AI836096	glial fibrillary acidic protein	protein-coding	0.050000	0.621891	-33(CTCCATAAAGGC,-,0.00)
mm_79730.1	chr9	62341971	62342171	+	1	NA	NA	NA	728	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.070000	0.552239	
mm_120031.1	chr14	55853915	55854115	+	1	NA	NA	NA	-100	NM_001040072	277154	Mm.319347	NM_001040072	ENSMUSG00000075592	Nynrin	AA409373|C80530|mKIAA1305	NYN domain and retroviral integrase containing	protein-coding	0.090000	0.706468	
mm_148236.1	chr18	80502398	80502598	-	1	NA	NA	NA	-32831	NM_026295	67655	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.005000	0.432836	50(TTCTTTAAAAAC,-,0.00),52(CTTTAAAAACCC,+,0.00)
mm_74268.1	chr8	124898414	124898614	+	1	NA	NA	NA	628	NM_001111141	244666	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	0.070000	0.592040	
mm_51497.1	chr6	83087203	83087403	+	1	NA	NA	NA	938	NM_010692	16815	Mm.20359	NM_010692	ENSMUSG00000034968	Lbx2	Lbx2h	ladybird homeobox homolog 2 (Drosophila)	protein-coding	0.025000	0.552239	
mm_36753.1	chr4	101264767	101264967	-	1	NA	NA	NA	415	NM_146145	16451	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.150000	0.781095	
mm_174.1	chr1	13593503	13593703	+	1	NA	NA	NA	-3693	NM_028173	72265	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	0.000000	0.452736	-30(GCATTTATGGCT,+,0.00)
mm_73077.1	chr8	94460430	94460630	+	1	NA	NA	NA	-12233	NM_001033207	434341	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	0.010000	0.462687	
mm_16726.1	chr2	7395890	7396090	-	1	NA	NA	NA	10	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.010000	0.378109	
mm_2875.1	chr1	131827429	131827629	+	1	NA	NA	NA	-483	NM_173865	98396	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	0.025000	0.542289	
mm_119851.1	chr14	54440902	54441102	+	1	NA	NA	NA	9404	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.010000	0.497512	-28(GACCTTATAGGC,-,0.00)
mm_35474.1	chr4	40839186	40839386	-	1	NA	NA	NA	10852	NR_039584	100628614		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.030000	0.492537	
mm_25910.1	chr3	131113758	131113958	+	1	NA	NA	NA	1067	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.015000	0.477612	
mm_168066.1	chr10	104545563	104545763	-	1	NA	NA	NA	258394	NR_105838	102465222		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA	0.035000	0.621891	
mm_172238.1	chr6	68270380	68270580	+	1	NA	NA	NA	-704781	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.000000	0.497512	
mm_164118.1	chr15	34609795	34609995	+	1	NA	NA	NA	-65178	NR_045883	71637	Mm.410827	NR_045883		4930413F20Rik	-	RIKEN cDNA 4930413F20 gene	ncRNA	0.015000	0.502488	
mm_8583.1	chr1	155973089	155973289	-	1	NA	NA	NA	66	NM_001039184	74081	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	0.115000	0.751244	
mm_34076.1	chr4	138457842	138458042	+	1	NA	NA	NA	2794	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.010000	0.422886	
mm_89893.1	chr10	110878001	110878201	+	1	NA	NA	NA	18406	NR_045979	75630	Mm.392786	NR_045979	ENSMUSG00000101801	1700020G17Rik	4930480D05Rik	RIKEN cDNA 1700020G17 gene	ncRNA	0.020000	0.537313	
mm_47426.1	chr5	123171986	123172186	-	1	NA	NA	NA	10600	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.050000	0.582090	
mm_165395.1	chr2	132599415	132599615	+	1	NA	NA	NA	1319	NR_033469	767814	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.020000	0.492537	
mm_22185.1	chr2	173218805	173219005	-	1	NA	NA	NA	17	NM_021394	58203	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.015000	0.547264	
mm_38262.1	chr4	136880288	136880488	-	1	NA	NA	NA	5789	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.005000	0.527363	
mm_40427.1	chr5	53532225	53532425	+	1	NA	NA	NA	-23454	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.025000	0.502488	
mm_113400.1	chr13	33661304	33661504	+	1	NA	NA	NA	-1	NM_001076790	238568	Mm.249698	NM_001076790	ENSMUSG00000047889	Serpinb6d	Gm11390|OTTMUSG00000000712|SPI3D	serine (or cysteine) peptidase inhibitor, clade B, member 6d	protein-coding	0.000000	0.567164	
mm_110559.1	chr12	55491691	55491891	-	1	NA	NA	NA	856	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.040000	0.636816	
mm_98449.1	chr11	94944664	94944864	+	1	NA	NA	NA	8540	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.010000	0.557214	
mm_58692.1	chr7	12922863	12923063	+	1	NA	NA	NA	652	NM_009095	20103	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	0.020000	0.537313	
mm_57349.1	chr6	124756634	124756834	-	1	NA	NA	NA	-247	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.135000	0.761194	
mm_66718.1	chr7	46100475	46100675	-	1	NA	NA	NA	189	NM_001204411	16514	Mm.333863	NM_010602	ENSMUSG00000096146	Kcnj11	Kir6.2|mBIR	potassium inwardly rectifying channel, subfamily J, member 11	protein-coding	0.120000	0.766169	
mm_40228.1	chr5	37286299	37286499	+	1	NA	NA	NA	40635	NM_007765	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.015000	0.542289	
mm_131279.1	chr16	11066237	11066437	+	1	NA	NA	NA	39	NM_009223	20621	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0.125000	0.761194	
mm_50148.1	chr6	41543587	41543787	+	1	NA	NA	NA	21911	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.045000	0.587065	
mm_41670.1	chr5	99508283	99508483	+	1	NA	NA	NA	220677	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.005000	0.477612	
mm_93233.1	chr10	95323993	95324193	-	1	NA	NA	NA	44	NM_001330141	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.030000	0.422886	82(TTTTTTAAACGG,+,0.00)
mm_86131.1	chr9	116218875	116219075	-	1	NA	NA	NA	-43612	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.015000	0.537313	
mm_46402.1	chr5	104092923	104093123	-	1	NA	NA	NA	-15415	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.025000	0.472637	
mm_84980.1	chr9	85350286	85350486	-	1	NA	NA	NA	-23236	NM_001160379	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.000000	0.467662	-34(GAGTATATAAGC,-,0.00)
mm_53914.1	chr6	3988877	3989077	-	1	NA	NA	NA	-119	NR_138566	21789	Mm.25612	NM_009364	ENSMUSG00000029664	Tfpi2	AV000670|PP5/TFPI-2	tissue factor pathway inhibitor 2	protein-coding	0.005000	0.452736	
mm_168785.1	chr12	18853468	18853668	+	1	NA	NA	NA	339058	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.125000	0.731343	
mm_105319.1	chr11	102887895	102888095	-	1	NA	NA	NA	2826	NM_025766	66784	Mm.483216	NM_025766	ENSMUSG00000075510	Fam187a	4933439F11Rik	family with sequence similarity 187, member A	protein-coding	0.010000	0.547264	
mm_111059.1	chr12	80110348	80110548	-	1	NA	NA	NA	2565	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.045000	0.641791	
mm_126531.1	chr15	82016340	82016540	+	1	NA	NA	NA	71	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.085000	0.626866	
mm_162644.1	chr1	193359941	193360141	+	1	NA	NA	NA	10241	NM_144817	215303	Mm.40329	NM_144817	ENSMUSG00000016179	Camk1g	CLICK-III|CaMKIgamma	calcium/calmodulin-dependent protein kinase I gamma	protein-coding	0.025000	0.572139	
mm_5604.1	chr1	39577200	39577400	-	1	NA	NA	NA	47	NM_001033135	67702	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4|OTTMUSG00000026591	ring finger protein 149	protein-coding	0.160000	0.761194	
mm_35299.1	chr4	22488052	22488252	-	1	NA	NA	NA	214	NM_008899	18992	Mm.129387	NM_008899	ENSMUSG00000095139	Pou3f2	9430075J19Rik|A230098E07Rik|Brn-2|Brn2|OTF-7|Otf7|oct-7	POU domain, class 3, transcription factor 2	protein-coding	0.080000	0.611940	
mm_57361.1	chr6	124762629	124762829	-	1	NA	NA	NA	-6242	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.045000	0.606965	
mm_43369.1	chr5	135463581	135463781	+	1	NA	NA	NA	-69135	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.010000	0.527363	
mm_65597.1	chr7	27339601	27339801	-	1	NA	NA	NA	-2089	NM_175641	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.020000	0.587065	
mm_165178.1	chr2	27950543	27950743	+	1	NA	NA	NA	64218	NM_015734	12831	Mm.7281	NM_015734	ENSMUSG00000026837	Col5a1	AI413331	collagen, type V, alpha 1	protein-coding	0.005000	0.492537	
mm_153187.1	chr19	34506966	34507166	-	1	NA	NA	NA	20408	NM_001111100	16889	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.020000	0.457711	
mm_139216.1	chr17	47729153	47729353	+	1	NA	NA	NA	2411	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.015000	0.542289	
mm_133450.1	chr16	88728737	88728937	+	1	NA	NA	NA	-25	NM_183189	268905	Mm.206668	NM_183189	ENSMUSG00000056350	Krtap13-1	AA589563|KAP13.1	keratin associated protein 13-1	protein-coding	0.010000	0.457711	-32(GAGTATATAAAG,-,0.00)
mm_168689.1	chr11	96248512	96248712	+	1	NA	NA	NA	-3048	NR_037977	193022	Mm.169508	NR_037977		Gm53	-	predicted gene 53	ncRNA	0.040000	0.542289	
mm_114638.1	chr13	76456463	76456663	+	1	NA	NA	NA	71602	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.000000	0.318408	
mm_108255.1	chr12	78303550	78303750	+	1	NA	NA	NA	76995	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.000000	0.298507	
mm_169459.1	chr1	46415899	46416099	+	1	NA	NA	NA	-9519	NM_001310335	100101919	Mm.383402	NM_001310335	ENSMUSG00000101337	Dnah7c	Dnahc7c	dynein, axonemal, heavy chain 7C	protein-coding	0.005000	0.462687	
mm_126335.1	chr15	79896608	79896808	+	1	NA	NA	NA	1685	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.015000	0.527363	
mm_154528.1	chrM	13450	13650	-	1	NA	NA	NA	NA	NA									0.020000	0.303483	
mm_16011.1	chr2	167383990	167384190	+	1	NA	NA	NA	-34912	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.030000	0.422886	
mm_154368.1	chrM	8866	9066	+	1	NA	NA	NA	NA	NA									0.020000	0.422886	
mm_75160.1	chr8	36547734	36547934	-	1	NA	NA	NA	58643	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding	0.005000	0.472637	
mm_75095.1	chr8	34107676	34107876	-	1	NA	NA	NA	38	NM_001293758	22428	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.030000	0.467662	
mm_15404.1	chr2	156735228	156735428	+	1	NA	NA	NA	14049	NM_001042487	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.015000	0.577114	
mm_156566.1	chrX	151902008	151902208	+	1	NA	NA	NA	-10238	NR_029732	387253		NR_029732	ENSMUSG00000065602	Mirlet7f-2	Mirlet7f2|Mirnlet7f2|let-7f-2	microRNA let7f-2	ncRNA	0.010000	0.442786	
mm_38358.1	chr4	137881300	137881500	-	1	NA	NA	NA	19163	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.005000	0.467662	
mm_97171.1	chr11	75516275	75516475	+	1	NA	NA	NA	2834	NM_001004157	380713	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	0.030000	0.472637	
mm_102776.1	chr11	68386780	68386980	-	1	NA	NA	NA	-54	NM_008744	18208	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0.170000	0.786070	
mm_133677.1	chr16	92292305	92292505	+	1	NA	NA	NA	16	NM_134110	246133	Mm.156736	NM_134110	ENSMUSG00000039672	Kcne2	2200002I16Rik|AW048273|MiRP1	potassium voltage-gated channel, Isk-related subfamily, gene 2	protein-coding	0.015000	0.497512	
mm_45871.1	chr5	88008165	88008365	-	1	NA	NA	NA	5740	NM_011422	20599	Mm.261199	NM_011422	ENSMUSG00000029280	Smr3a	AA589601|MSG1|MSG3|Smr1|Smr3	submaxillary gland androgen regulated protein 3A	protein-coding	0.015000	0.537313	
mm_152091.1	chr19	6908011	6908211	-	1	NA	NA	NA	1534	NM_012021	54683	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.005000	0.502488	
mm_25913.1	chr3	131133165	131133365	+	1	NA	NA	NA	20474	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.020000	0.472637	
mm_47389.1	chr5	123014752	123014952	-	1	NA	NA	NA	-222	NM_175423	109305	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.085000	0.676617	
mm_118654.1	chr14	21750519	21750719	+	1	NA	NA	NA	88	NM_026283	67630	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	0.140000	0.766169	
mm_128394.1	chr15	43171090	43171290	-	1	NA	NA	NA	-372	NM_172815	239405	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.005000	0.417910	-41(TTTTTTAAAGGC,+,0.00)
mm_145200.1	chr18	49979392	49979592	+	1	NA	NA	NA	65	NM_001177759	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.075000	0.711443	
mm_164355.1	chr16	20841541	20841741	+	1	NA	NA	NA	-107130	NM_009379	21832	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.000000	0.293532	
mm_79871.1	chr9	65136905	65137105	+	1	NA	NA	NA	-4184	NM_008988	19289	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0.005000	0.378109	
mm_53046.1	chr6	124713008	124713208	+	1	NA	NA	NA	819	NM_007531	12034	Mm.36241	NM_007531	ENSMUSG00000004264	Phb2	AU044498|BAP|Bap37|Bcap37|REA	prohibitin 2	protein-coding	0.020000	0.527363	
mm_122790.1	chr14	54417645	54417845	-	1	NA	NA	NA	-43	NM_011405	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.040000	0.616915	
mm_100018.1	chr11	114890221	114890421	+	1	NA	NA	NA	280	NM_170758	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.045000	0.597015	
mm_36293.1	chr4	65381252	65381452	-	1	NA	NA	NA	-223634	NM_053084	69807	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0.025000	0.542289	
mm_50752.1	chr6	53287218	53287418	+	1	NA	NA	NA	15	NM_001327821	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.055000	0.507463	
mm_27470.1	chr3	52856279	52856479	-	1	NA	NA	NA	71287	NR_040555	622124	Mm.389434	NR_040555	ENSMUSG00000104401	Gm20750	-	predicted gene, 20750	ncRNA	0.020000	0.467662	
mm_130512.1	chr15	98846202	98846402	-	1	NA	NA	NA	-14794	NM_016781	19082	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.015000	0.606965	
mm_125180.1	chr15	31602048	31602248	+	1	NA	NA	NA	32	NM_026546	68073	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.120000	0.606965	
mm_53132.1	chr6	125145307	125145507	+	1	NA	NA	NA	183	NM_001302779	320678	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	0.080000	0.691542	
mm_164297.1	chr15	103895920	103896120	+	1	NA	NA	NA	3280	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.010000	0.313433	
mm_33552.1	chr4	130934853	130935053	+	1	NA	NA	NA	-9432	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.015000	0.462687	59(GCTTAAATAGCG,+,0.00)
mm_170275.1	chr18	25303931	25304131	+	1	NA	NA	NA	135011	NM_001033532	225289	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	0.025000	0.522388	
mm_98594.1	chr11	95824391	95824591	+	1	NA	NA	NA	-9	NM_153104	237928	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.135000	0.771144	62(GCATTTAAAGGG,+,0.00),62(GCATTTAAAGGG,-,0.00)
mm_114177.1	chr13	55609833	55610033	+	1	NA	NA	NA	10037	NM_001311137	218271	Mm.139825	NM_146045	ENSMUSG00000021504	B4galt7	-	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)	protein-coding	0.010000	0.393035	
mm_94956.1	chr11	30221543	30221743	+	1	NA	NA	NA	-1871	NM_175836	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.010000	0.507463	
mm_144448.1	chr18	23217024	23217224	+	1	NA	NA	NA	-472	NR_110491	665797	Mm.328158	NR_110491		Gm7788	EG665797	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.000000	0.512438	
mm_117726.1	chr13	95525189	95525389	-	1	NA	NA	NA	-49	NM_007974	14063	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	0.065000	0.666667	
mm_19064.1	chr2	77519506	77519706	-	1	NA	NA	NA	60	NM_001113400	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.025000	0.477612	
mm_135831.1	chr16	58523399	58523599	-	1	NA	NA	NA	-187	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.090000	0.701493	
mm_95132.1	chr11	34506879	34507079	+	1	NA	NA	NA	192157	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.000000	0.402985	
mm_55305.1	chr6	54967131	54967331	-	1	NA	NA	NA	4430	NM_001171007	107607	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.010000	0.482587	
mm_144112.1	chr18	4353487	4353687	+	1	NA	NA	NA	40	NR_040328	73915	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0.050000	0.621891	
mm_134254.1	chr16	13730364	13730564	-	1	NA	NA	NA	20	NR_110990	26565	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	0.030000	0.606965	
mm_15231.1	chr2	154551693	154551893	+	1	NA	NA	NA	17	NM_001171640	70362	Mm.479620	NM_001171640	ENSMUSG00000078129	Actl10	1700007I08Rik	actin-like 10	protein-coding	0.005000	0.512438	
mm_153399.1	chr19	40496902	40497102	-	1	NA	NA	NA	16734	NM_178362	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.000000	0.512438	
mm_97039.1	chr11	72305367	72305567	+	1	NA	NA	NA	3838	NM_001037713	327959	Mm.291131	NM_001037713	ENSMUSG00000040483	Xaf1	Fbox39	XIAP associated factor 1	protein-coding	0.000000	0.502488	
mm_105057.1	chr11	100712251	100712451	-	1	NA	NA	NA	116	NM_001038010	14534	Mm.218837	NM_020004	ENSMUSG00000020918	Kat2a	1110051E14Rik|AW212720|Gcn5|Gcn5l2|mmGCN5	K(lysine) acetyltransferase 2A	protein-coding	0.090000	0.756219	
mm_61379.1	chr7	70871042	70871242	+	1	NA	NA	NA	-504396	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.020000	0.502488	
mm_15620.1	chr2	161004528	161004728	+	1	NA	NA	NA	-92289	NM_182840	280635	Mm.330747	NM_182840	ENSMUSG00000050700	Emilin3	1110013O17Rik|EMILIN-3|EMILIN-5|EMILIN-T|Emilin5	elastin microfibril interfacer 3	protein-coding	0.010000	0.432836	
mm_112380.1	chr12	119237912	119238112	-	1	NA	NA	NA	264	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.065000	0.641791	12(GCCTTAAGGGCC,+,0.00)
mm_138973.1	chr17	45298483	45298683	+	1	NA	NA	NA	135124	NM_152810	71702	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0.015000	0.626866	
mm_97561.1	chr11	78935307	78935507	+	1	NA	NA	NA	10116	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.512438	
mm_172298.1	chr7	101155031	101155231	-	1	NA	NA	NA	46356	NM_199012	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.025000	0.522388	
mm_60674.1	chr7	45062382	45062582	+	1	NA	NA	NA	53	NM_025533	66394	Mm.272139	NM_025533	ENSMUSG00000003421	Nosip	2310061K06Rik|CGI-25	nitric oxide synthase interacting protein	protein-coding	0.085000	0.557214	-25(GAGTTTAAAAAC,-,0.00)
mm_78974.1	chr9	45370001	45370201	+	1	NA	NA	NA	-84	NM_022004	59095	Mm.208287	NM_022004	ENSMUSG00000066705	Fxyd6	0610030I18Rik|Php	FXYD domain-containing ion transport regulator 6	protein-coding	0.030000	0.497512	
mm_40711.1	chr5	65868163	65868363	+	1	NA	NA	NA	4694	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.005000	0.437811	
mm_77128.1	chr8	111337799	111337999	-	1	NA	NA	NA	306	NM_001310613	74568	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0.075000	0.577114	
mm_165939.1	chr4	76864083	76864283	-	1	NA	NA	NA	1347712	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.333333	
mm_35261.1	chr4	19892247	19892447	-	1	NA	NA	NA	30219	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.000000	0.517413	
mm_19086.1	chr2	79132275	79132475	-	1	NA	NA	NA	-123051	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.000000	0.407960	-33(GTATTTAAAAGC,-,0.00)
mm_134212.1	chr16	11176218	11176418	-	1	NA	NA	NA	75	NR_027502	106205	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	0.135000	0.746269	
mm_14121.1	chr2	125912575	125912775	+	1	NA	NA	NA	46452	NM_001291002	69976	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	0.000000	0.343284	-74(CACTATATAAAA,-,0.00)
mm_10808.1	chr2	24349803	24350003	+	1	NA	NA	NA	4532	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.000000	0.467662	
mm_143473.1	chr17	71127530	71127730	-	1	NA	NA	NA	-56348	NM_022882	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.020000	0.562189	
mm_127438.1	chr15	101270227	101270427	+	1	NA	NA	NA	3481	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.055000	0.606965	
mm_64355.1	chr7	142388133	142388333	+	1	NA	NA	NA	-363	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.005000	0.507463	
mm_105858.1	chr11	113751731	113751931	-	1	NA	NA	NA	-16	NM_001163346	56699	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.070000	0.661692	
mm_145055.1	chr18	40271576	40271776	+	1	NA	NA	NA	13315	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.000000	0.422886	
mm_53703.1	chr6	142917723	142917923	+	1	NA	NA	NA	46629	NM_011374	20449	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0.045000	0.487562	-34(CCTCATAAAGGA,+,0.00)
mm_131113.1	chr16	5233534	5233734	+	1	NA	NA	NA	13	NM_145362	208211	Mm.34581	NM_145362	ENSMUSG00000039427	Alg1	HMAT1|HMT1	asparagine-linked glycosylation 1 (beta-1,4-mannosyltransferase)	protein-coding	0.090000	0.661692	
mm_128935.1	chr15	74651740	74651940	-	1	NA	NA	NA	-15522	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.010000	0.472637	
mm_81084.1	chr9	106270866	106271066	+	1	NA	NA	NA	-10095	NM_027354	70235	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	0.010000	0.472637	
mm_16539.1	chr2	181628604	181628804	+	1	NA	NA	NA	27385	NM_133701	68879	Mm.292001	NM_133701	ENSMUSG00000002455	Prpf6	1190003A07Rik|2610031L17Rik|ANT-1|U5-102K	pre-mRNA splicing factor 6	protein-coding	0.000000	0.358209	
mm_67062.1	chr7	67619922	67620122	-	1	NA	NA	NA	25214	NM_175124	67867	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	0.010000	0.437811	-4(GTCTTTTTAAAG,-,0.00),-2(CTTTTTAAAGAA,+,0.00)
mm_54786.1	chr6	41554317	41554517	-	1	NA	NA	NA	32641	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.517413	
mm_86052.1	chr9	114563195	114563395	-	1	NA	NA	NA	1074	NM_001042503	636931	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	0.080000	0.587065	
mm_43412.1	chr5	135958005	135958205	+	1	NA	NA	NA	16371	NM_001160366	109267	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0.015000	0.462687	
mm_146890.1	chr18	25754046	25754246	-	1	NA	NA	NA	-163	NM_001174074	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.070000	0.582090	
mm_94032.1	chr10	127888553	127888753	-	1	NA	NA	NA	46	NM_017473	54150	Mm.6696	NM_017473	ENSMUSG00000040134	Rdh7	AI194929|CRAD2	retinol dehydrogenase 7	protein-coding	0.010000	0.482587	
mm_77478.1	chr8	122460581	122460781	-	1	NA	NA	NA	11	NM_013914	30927	Mm.103673	NM_013914	ENSMUSG00000006587	Snai3	AI643946|Smuc|Zfp293	snail family zinc finger 3	protein-coding	0.105000	0.691542	
mm_140086.1	chr17	75442354	75442554	+	1	NA	NA	NA	6549	NM_001166493	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding	0.005000	0.497512	-75(CCATATAAAAGC,-,0.00)
mm_130224.1	chr15	96210770	96210970	-	1	NA	NA	NA	-12896	NR_040423	70040	Mm.437832	NR_040423		2610037D02Rik	AU024679	RIKEN cDNA 2610037D02 gene	ncRNA	0.015000	0.502488	
mm_62348.1	chr7	100498637	100498837	+	1	NA	NA	NA	5379	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.035000	0.567164	
mm_61997.1	chr7	91156754	91156954	+	1	NA	NA	NA	66068	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.343284	
mm_110592.1	chr12	56532902	56533102	-	1	NA	NA	NA	-3582	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.075000	0.537313	
mm_168812.1	chr12	21778780	21778980	-	1	NA	NA	NA	-361444	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.100000	0.731343	
mm_8537.1	chr1	155059440	155059640	-	1	NA	NA	NA	40096	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.010000	0.562189	
mm_45323.1	chr5	65483957	65484157	-	1	NA	NA	NA	8778	NM_133697	68552	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.015000	0.507463	
mm_51118.1	chr6	67896052	67896252	+	1	NA	NA	NA	-330453	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.005000	0.462687	
mm_100751.1	chr11	4232529	4232729	-	1	NA	NA	NA	-4156	NM_001013365	18413	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.015000	0.572139	
mm_158475.1	chrX	141473787	141473987	-	1	NA	NA	NA	189	NM_053185	94216	Mm.155586	NM_053185	ENSMUSG00000031273	Col4a6	BB116301	collagen, type IV, alpha 6	protein-coding	0.040000	0.567164	
mm_133661.1	chr16	91848773	91848973	+	1	NA	NA	NA	82757	NM_138597	28080	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.020000	0.552239	
mm_66101.1	chr7	31037807	31038007	-	1	NA	NA	NA	2410	NR_106017	102465635		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.010000	0.572139	
mm_68402.1	chr7	109609127	109609327	-	1	NA	NA	NA	7341	NR_037617	76954	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.005000	0.378109	27(CTCTAGAAAAGG,-,0.00)
mm_145575.1	chr18	60925550	60925750	+	1	NA	NA	NA	18	NM_177407	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.055000	0.641791	
mm_160011.1	chr6	124998577	124998777	+	1	NA	NA	NA	67	NM_001145926	319352	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.010000	0.547264	
mm_5717.1	chr1	44101543	44101743	-	1	NA	NA	NA	745	NM_029368	75623	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0.060000	0.582090	
mm_28469.1	chr3	90695692	90695892	-	1	NA	NA	NA	-71	NM_009114	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.005000	0.507463	68(GCCTATAAATAC,-,0.00)
mm_67325.1	chr7	79732070	79732270	-	1	NA	NA	NA	606	NM_175640	103968	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	0.015000	0.577114	
mm_146734.1	chr18	15346098	15346298	-	1	NA	NA	NA	56801	NM_001308647	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.035000	0.477612	-33(CCATATAAAAAC,-,0.00)
mm_139383.1	chr17	51904114	51904314	+	1	NA	NA	NA	21487	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.010000	0.407960	79(TTTTATAAACCC,+,0.00)
mm_51740.1	chr6	87277644	87277844	+	1	NA	NA	NA	58031	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.010000	0.537313	
mm_120620.1	chr14	70456903	70457103	+	1	NA	NA	NA	-514	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.010000	0.492537	
mm_118459.1	chr14	8666291	8666491	+	1	NA	NA	NA	1	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	0.030000	0.587065	
mm_97191.1	chr11	75576679	75576879	+	1	NA	NA	NA	-11300	NM_008850	18738	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.015000	0.522388	
mm_151783.1	chr19	5366232	5366432	-	1	NA	NA	NA	31	NM_001038231	23825	Mm.358649	NM_011793	ENSMUSG00000024844	Banf1	Baf|Bcrp1|L2bp1/Baf	barrier to autointegration factor 1	protein-coding	0.115000	0.736318	
mm_41193.1	chr5	88327935	88328135	+	1	NA	NA	NA	10723	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.015000	0.427861	
mm_115660.1	chr13	12461314	12461514	-	1	NA	NA	NA	324	NM_001291060	56048	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.105000	0.671642	
mm_122742.1	chr14	54149131	54149331	-	1	NA	NA	NA	104698	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.030000	0.577114	
mm_47324.1	chr5	122479468	122479668	-	1	NA	NA	NA	22657	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.000000	0.373134	
mm_13679.1	chr2	116899648	116899848	+	1	NA	NA	NA	-404	NR_040336	320975	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.020000	0.467662	
mm_167517.1	chr9	14903685	14903885	-	1	NA	NA	NA	166	NM_176807	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.015000	0.567164	
mm_113122.1	chr13	24562842	24563042	+	1	NA	NA	NA	-19247	NM_001286100	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.005000	0.452736	
mm_46630.1	chr5	108449021	108449221	-	1	NA	NA	NA	-230	NM_172883	243197	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7	major facilitator superfamily domain containing 7A	protein-coding	0.020000	0.487562	71(ACCTCTAAAAGG,-,0.00),72(CCTCTAAAAGGG,+,0.00)
mm_157110.1	chrX	9438039	9438239	-	1	NA	NA	NA	31185	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.427861	24(CCCCCTAAAAGG,-,0.00)
mm_80357.1	chr9	75193295	75193495	+	1	NA	NA	NA	-38619	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.000000	0.353234	
mm_56666.1	chr6	113600549	113600749	-	1	NA	NA	NA	66	NM_027633	70979	Mm.72959	NM_027633	ENSMUSG00000033963	Fancd2os	4931417G12Rik	Fancd2 opposite strand	protein-coding	0.065000	0.651741	
mm_99731.1	chr11	106301296	106301496	+	1	NA	NA	NA	500	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.020000	0.567164	
mm_107569.1	chr12	44328467	44328667	+	1	NA	NA	NA	-318	NM_176930	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.025000	0.532338	
mm_107773.1	chr12	59133733	59133933	+	1	NA	NA	NA	2380	NM_001165253	338320	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.025000	0.507463	
mm_7284.1	chr1	97706871	97707071	-	1	NA	NA	NA	-44953	NM_133825	52392	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.005000	0.258706	
mm_110265.1	chr12	31948672	31948872	-	1	NA	NA	NA	1763	NM_177993	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.010000	0.353234	
mm_80041.1	chr9	69094481	69094681	+	1	NA	NA	NA	-195260	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.030000	0.517413	
mm_17251.1	chr2	25712676	25712876	-	1	NA	NA	NA	5897	NM_023326	107771	Mm.330057	NM_023326	ENSMUSG00000049086	Bmyc	2900002K07Rik|AW060705|Mycb	brain expressed myelocytomatosis oncogene	protein-coding	0.005000	0.487562	-33(GCTTATAAAGGA,+,0.00)
mm_117381.1	chr13	73328355	73328555	-	1	NA	NA	NA	27	NR_033306	407785	Mm.29897	NM_010888	ENSMUSG00000021606	Ndufs6	BC059730|IP13	NADH dehydrogenase (ubiquinone) Fe-S protein 6	protein-coding	0.100000	0.641791	
mm_91197.1	chr10	21157196	21157396	-	1	NA	NA	NA	3688	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.005000	0.368159	
mm_108825.1	chr12	95728236	95728436	+	1	NA	NA	NA	36110	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.010000	0.393035	
mm_69763.1	chr7	141009675	141009875	-	1	NA	NA	NA	969	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.030000	0.512438	
mm_48442.1	chr5	140635963	140636163	-	1	NA	NA	NA	12968	NM_001308040	78339	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.020000	0.587065	
mm_107359.1	chr12	32834273	32834473	+	1	NA	NA	NA	10257	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.005000	0.427861	22(TGGTTTTAAAAG,-,0.00),24(GTTTTAAAAGTC,+,0.00)
mm_141642.1	chr17	33358759	33358959	-	1	NA	NA	NA	19	NM_207541	224694	Mm.170029	NM_207541	ENSMUSG00000003929	Zfp81	AA409460|AA409461|C330034P10Rik|D330034E10Rik|Hszfp36|KRAB13|Zfp78	zinc finger protein 81	protein-coding	0.035000	0.557214	
mm_171485.1	chr4	146097177	146097377	+	1	NA	NA	NA	-35	NM_001037926	626316	Mm.270762	NM_001037926	ENSMUSG00000066009	Zfp987	Gm13051|OTTMUSG00000010104|OTTMUSG00000010173	zinc finger protein 987	protein-coding	0.015000	0.492537	
mm_19999.1	chr2	118762537	118762737	-	1	NA	NA	NA	24	NM_001001982	214239	Mm.379342	NM_001001982	ENSMUSG00000045838	A430105I19Rik	Gm353	RIKEN cDNA A430105I19 gene	protein-coding	0.050000	0.621891	
mm_84099.1	chr9	58273952	58274152	-	1	NA	NA	NA	20888	NM_026942	69106	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.010000	0.482587	
mm_71640.1	chr8	57511812	57512012	+	1	NA	NA	NA	69	NM_008252	97165	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.065000	0.587065	
mm_71251.1	chr8	40915771	40915971	+	1	NA	NA	NA	-10362	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.010000	0.268657	27(TCCTTTTTAAAG,-,0.00),29(CTTTTTAAAGAT,+,0.00)
mm_59660.1	chr7	28267703	28267903	+	1	NA	NA	NA	-78	NM_198425	386655	Mm.258201	NM_198425	ENSMUSG00000046058	Eid2	Cri2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding	0.135000	0.671642	
mm_4497.1	chr1	173647736	173647936	+	1	NA	NA	NA	16977	NM_175026	236312	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	0.020000	0.393035	
mm_4731.1	chr1	181428038	181428238	+	1	NA	NA	NA	75510	NM_001160211	72978	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	0.010000	0.373134	
mm_70911.1	chr8	25716478	25716678	+	1	NA	NA	NA	-3470	NR_121642	71910	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	0.020000	0.487562	-64(ATCTATAAAAGG,-,0.00)
mm_46759.1	chr5	112251057	112251257	-	1	NA	NA	NA	1361	NM_001312884	12959	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0.015000	0.542289	
mm_53398.1	chr6	129591618	129591818	+	1	NA	NA	NA	-93	NM_010654	16643	Mm.391515	NM_010654	ENSMUSG00000030165	Klrd1	CD94	killer cell lectin-like receptor, subfamily D, member 1	protein-coding	0.015000	0.472637	1(CTCTTTTAATGC,-,0.00),60(TTCTTTAAAAAG,-,0.00),62(CTTTAAAAAGCA,+,0.00)
mm_41436.1	chr5	90904074	90904274	+	1	NA	NA	NA	275	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.015000	0.587065	
mm_6169.1	chr1	65071513	65071713	-	1	NA	NA	NA	1919	NM_007775	12966	Mm.491115	NM_007775	ENSMUSG00000025952	Crygc	Cryg-5	crystallin, gamma C	protein-coding	0.035000	0.462687	
mm_42209.1	chr5	112576339	112576539	+	1	NA	NA	NA	759	NM_001253917	56747	Mm.143742	NM_019982	ENSMUSG00000058153	Sez6l	AI843918|AIG1|AW539724|Acig1|BSRP-B|mKIAA0927	seizure related 6 homolog like	protein-coding	0.030000	0.592040	
mm_89414.1	chr10	90829742	90829942	+	1	NA	NA	NA	-1	NM_001347053	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.095000	0.701493	
mm_996.1	chr1	58713178	58713378	+	1	NA	NA	NA	-8	NM_009805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.030000	0.447761	
mm_41681.1	chr5	100039930	100040130	+	1	NA	NA	NA	36	NR_027990	67870	Mm.11311	NM_026421	ENSMUSG00000029326	Enoph1	2310057D15Rik|BB183658|C81437	enolase-phosphatase 1	protein-coding	0.095000	0.696517	
mm_85803.1	chr9	110132281	110132481	-	1	NA	NA	NA	357	NM_009211	20588	Mm.85410	NM_009211	ENSMUSG00000032481	Smarcc1	AI115498|BAF155|Rsc8|SRG3|msp3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	protein-coding	0.130000	0.746269	
mm_1355.1	chr1	66321902	66322102	+	1	NA	NA	NA	278	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.030000	0.542289	
mm_167097.1	chr7	109457895	109458095	+	1	NA	NA	NA	-18942	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	0.015000	0.532338	
mm_48598.1	chr5	144050538	144050738	-	1	NA	NA	NA	-29	NM_033039	18261	Mm.270533	NM_033039	ENSMUSG00000029618	Ocm	-	oncomodulin	protein-coding	0.010000	0.472637	
mm_171295.1	chr3	91126716	91126916	+	1	NA	NA	NA	-36011	NM_001101461	229550	Mm.98335	NM_001101461	ENSMUSG00000091175	9130204L05Rik	Gm127	RIKEN cDNA 9130204L05 gene	protein-coding	0.070000	0.651741	
mm_127054.1	chr15	96709922	96710122	+	1	NA	NA	NA	-10324	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.090000	0.671642	
mm_65899.1	chr7	30187397	30187597	-	1	NA	NA	NA	3326	NM_009944	12865	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	0.010000	0.542289	
mm_170693.1	chr2	132284987	132285187	+	1	NA	NA	NA	-852	NM_001291039	110911	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.035000	0.597015	
mm_118640.1	chr14	21481334	21481534	+	1	NA	NA	NA	-18336	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.025000	0.522388	
mm_18761.1	chr2	73453794	73453994	-	1	NA	NA	NA	-5	NM_001289722	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.010000	0.457711	
mm_23518.1	chr3	60595544	60595744	+	1	NA	NA	NA	94465	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.020000	0.422886	-58(TCTTTTAGGGTC,+,0.00)
mm_86551.1	chr10	10234911	10235111	+	1	NA	NA	NA	237303	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.040000	0.482587	
mm_11575.1	chr2	32916435	32916635	+	1	NA	NA	NA	40401	NM_146119	227737	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.005000	0.427861	
mm_129286.1	chr15	77162978	77163178	-	1	NA	NA	NA	-9266	NM_001286418	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.005000	0.487562	
mm_148827.1	chr19	6335003	6335203	+	1	NA	NA	NA	64	NM_008583	17283	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0.075000	0.666667	
mm_24448.1	chr3	90612184	90612384	+	1	NA	NA	NA	-610	NM_011313	20200	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0.010000	0.507463	
mm_132753.1	chr16	44161276	44161476	+	1	NA	NA	NA	-12021	NM_001029889	207806	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.005000	0.417910	
mm_9345.1	chr1	172066458	172066658	-	1	NA	NA	NA	-8962	NM_010916	18071	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	0.010000	0.522388	
mm_63873.1	chr7	136047968	136048168	+	1	NA	NA	NA	-220256	NR_102277	77383	Mm.227745	NR_102277	ENSMUSG00000110027	C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA	0.005000	0.422886	
mm_56765.1	chr6	116133802	116134002	-	1	NA	NA	NA	59472	NM_177412	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.010000	0.522388	
mm_119507.1	chr14	47381529	47381729	+	1	NA	NA	NA	7769	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.015000	0.512438	
mm_43812.1	chr5	142904625	142904825	+	1	NA	NA	NA	2029	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.030000	0.522388	
mm_54240.1	chr6	28244142	28244342	-	1	NA	NA	NA	17359	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.030000	0.407960	
mm_95218.1	chr11	44013959	44014159	+	1	NA	NA	NA	-112822	NM_001284381	11548	Mm.39086	NM_007416	ENSMUSG00000050541	Adra1b	[a]1b	adrenergic receptor, alpha 1b	protein-coding	0.005000	0.527363	
mm_60805.1	chr7	45632251	45632451	+	1	NA	NA	NA	4814	NM_028544	69903	Mm.181396	NM_028544	ENSMUSG00000044562	Rasip1	1110025D03Rik|2610025P08Rik|AI853551|Rain	Ras interacting protein 1	protein-coding	0.090000	0.686567	
mm_48371.1	chr5	139478841	139479041	-	1	NA	NA	NA	5550	NM_133349	100494	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.020000	0.587065	
mm_9934.1	chr1	189922311	189922511	-	1	NA	NA	NA	-123	NM_026796	226830	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.145000	0.786070	
mm_150379.1	chr19	36115147	36115347	+	1	NA	NA	NA	4597	NM_013468	107765	Mm.10279	NM_013468	ENSMUSG00000024803	Ankrd1	Alrp|CARP|Crap|MARP1	ankyrin repeat domain 1 (cardiac muscle)	protein-coding	0.040000	0.517413	
mm_149952.1	chr19	27906236	27906436	+	1	NA	NA	NA	76612	NM_001166414	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.030000	0.482587	-31(GCTTTAAAACTC,+,0.00)
mm_152847.1	chr19	24030856	24031056	-	1	NA	NA	NA	63	NM_001114174	381217	Mm.426078	NM_001114174	ENSMUSG00000071604	Fam189a2	AI414343|AI666772|Gm967	family with sequence similarity 189, member A2	protein-coding	0.165000	0.820896	
mm_109948.1	chr12	11331944	11332144	-	1	NA	NA	NA	32157	NR_106136	102465775		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.030000	0.512438	
mm_96281.1	chr11	62951093	62951293	+	1	NA	NA	NA	0	NM_025496	66338	Mm.46166	NM_025496	ENSMUSG00000042200	Cdrt4	1700019I23Rik	CMT1A duplicated region transcript 4	protein-coding	0.010000	0.552239	
mm_17231.1	chr2	25574794	25574994	-	1	NA	NA	NA	-23	NM_029293	75454	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	0.060000	0.611940	
mm_58837.1	chr7	16830767	16830967	+	1	NA	NA	NA	-12035	NM_001252458	101540	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.020000	0.597015	
mm_74841.1	chr8	23648430	23648630	-	1	NA	NA	NA	-21131	NM_001277239	320158	Mm.121274	NM_177086	ENSMUSG00000037492	Zmat4	9630048M01Rik	zinc finger, matrin type 4	protein-coding	0.015000	0.492537	-91(CAATATAAAAGG,-,0.00)
mm_59647.1	chr7	28162770	28162970	+	1	NA	NA	NA	-6878	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.020000	0.532338	
mm_78356.1	chr9	25504341	25504541	+	1	NA	NA	NA	22844	NM_026189	67484	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.015000	0.432836	
mm_106166.1	chr11	116654185	116654385	-	1	NA	NA	NA	28	NM_030206	114886	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0.065000	0.646766	
mm_48829.1	chr5	149127629	149127829	-	1	NA	NA	NA	-16534	NR_137278	105242579	Mm.445929	NR_137278	ENSMUSG00000107388	Gm42788	-	predicted gene 42788	ncRNA	0.025000	0.497512	
mm_4752.1	chr1	182287847	182288047	+	1	NA	NA	NA	-5188	NM_007853	13244	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.015000	0.537313	
mm_157133.1	chrX	9453549	9453749	-	1	NA	NA	NA	15675	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.015000	0.427861	
mm_3904.1	chr1	161864362	161864562	+	1	NA	NA	NA	12199	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.005000	0.412935	
mm_115211.1	chr13	109260400	109260600	+	1	NA	NA	NA	-64244	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.055000	0.626866	
mm_107699.1	chr12	55410329	55410529	+	1	NA	NA	NA	11604	NM_011968	26443	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.010000	0.308458	
mm_23691.1	chr3	68691830	68692030	+	1	NA	NA	NA	506	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.005000	0.517413	
mm_151194.1	chr19	53533732	53533932	+	1	NA	NA	NA	4514	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.015000	0.502488	
mm_66057.1	chr7	30743671	30743871	-	1	NA	NA	NA	-90	NM_001290631	14447	Mm.436562	NM_008085	ENSMUSG00000061099	Gapdhs	Gapd-s|Gapds	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein-coding	0.005000	0.577114	
mm_5633.1	chr1	40431990	40432190	-	1	NA	NA	NA	2520	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.005000	0.393035	
mm_52124.1	chr6	97941128	97941328	+	1	NA	NA	NA	11411	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.030000	0.587065	
mm_34521.1	chr4	148960260	148960460	+	1	NA	NA	NA	139452	NM_019781	56273	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	0.030000	0.597015	-69(ATCCATTTAAGG,-,0.00),-67(CCATTTAAGGAA,+,0.00)
mm_2150.1	chr1	88165888	88166088	+	1	NA	NA	NA	-24	NM_201643	394433	Mm.300095	NM_201643	ENSMUSG00000089943	Ugt1a5	-	UDP glucuronosyltransferase 1 family, polypeptide A5	protein-coding	0.025000	0.502488	
mm_62221.1	chr7	98489892	98490092	+	1	NA	NA	NA	-4230	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.150000	0.776119	-31(CTATTTAAAAGG,-,0.00)
mm_116028.1	chr13	25269803	25270003	-	1	NA	NA	NA	93	NM_009513	22360	Mm.4766	NM_009513	ENSMUSG00000048978	Nrsn1	Neurensin-1|Neuro-p24|Vmp	neurensin 1	protein-coding	0.095000	0.691542	
mm_1561.1	chr1	74153923	74154123	+	1	NA	NA	NA	29	NM_009909	12765	Mm.234466	NM_009909	ENSMUSG00000026180	Cxcr2	CD128|CDw128|Cmkar2|Gpcr16|IL-8Rh|IL-8rb|IL8RA|Il8rb|mIL-8RH	chemokine (C-X-C motif) receptor 2	protein-coding	0.020000	0.572139	
mm_34000.1	chr4	137920653	137920853	+	1	NA	NA	NA	58516	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.030000	0.517413	
mm_31255.1	chr4	45012720	45012920	+	1	NA	NA	NA	-408	NM_173399	230119	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0.040000	0.507463	
mm_63759.1	chr7	131110989	131111189	+	1	NA	NA	NA	35194	NM_173409	233918	Mm.78341	NM_173409	ENSMUSG00000013668	4933402N03Rik	4930412O05	RIKEN cDNA 4933402N03 gene	protein-coding	0.025000	0.482587	
mm_52925.1	chr6	122922465	122922665	+	1	NA	NA	NA	717	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.005000	0.398010	
mm_145708.1	chr18	62922228	62922428	+	1	NA	NA	NA	1	NM_133237	494504	Mm.391102	NM_133237	ENSMUSG00000071847	Apcdd1	AB023957|AU041258|Drapc1|EIG180	adenomatosis polyposis coli down-regulated 1	protein-coding	0.110000	0.756219	
mm_20370.1	chr2	128429044	128429244	-	1	NA	NA	NA	207	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.020000	0.517413	
mm_24437.1	chr3	90588443	90588643	+	1	NA	NA	NA	-1704	NM_001195760	628324	Mm.33816	NM_001195760	ENSMUSG00000094018	S100a2	CaN19|EG628324|S100L	S100 calcium binding protein A2	protein-coding	0.005000	0.457711	
mm_1765.1	chr1	75549504	75549704	+	1	NA	NA	NA	3338	NM_009208	20536	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	0.030000	0.587065	
mm_33338.1	chr4	129231737	129231937	+	1	NA	NA	NA	-3926	NM_001285866	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.015000	0.606965	-3(GGCTCTAAGAAG,-,0.00)
mm_138066.1	chr17	33935106	33935306	+	1	NA	NA	NA	5124	NM_001185182	14976	Mm.2948	NM_010385	ENSMUSG00000024309	Pfdn6	H-2Ke2|H2-Ke2|Ke-2	prefoldin subunit 6	protein-coding	0.035000	0.567164	
mm_13861.1	chr2	119733348	119733548	+	1	NA	NA	NA	-8889	NM_146125	228550	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	0.000000	0.422886	
mm_135279.1	chr16	38445855	38446055	-	1	NA	NA	NA	6734	NM_007414	11544	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.070000	0.616915	
mm_31494.1	chr4	53128727	53128927	+	1	NA	NA	NA	31068	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.040000	0.492537	
mm_100530.1	chr11	120598587	120598787	+	1	NA	NA	NA	155	NM_001038230	66156	Mm.21645	NM_025389	ENSMUSG00000025135	Anapc11	1110011I19Rik|R75218	anaphase promoting complex subunit 11	protein-coding	0.130000	0.721393	
mm_33853.1	chr4	135868532	135868732	+	1	NA	NA	NA	5214	NM_026383	52830	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.005000	0.293532	
mm_29648.1	chr3	122239698	122239898	-	1	NA	NA	NA	-5759	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.010000	0.577114	
mm_91122.1	chr10	19583002	19583202	-	1	NA	NA	NA	-8847	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.005000	0.402985	
mm_22891.1	chr3	30746123	30746323	+	1	NA	NA	NA	-70	NM_029489	75953	Mm.308084	NM_029489	ENSMUSG00000051860	Samd7	4930597A01Rik	sterile alpha motif domain containing 7	protein-coding	0.010000	0.447761	-89(GCATCTTAAAGG,-,0.00),77(TCGTATTTAAGG,-,0.00)
mm_86479.1	chr10	4710099	4710299	+	1	NA	NA	NA	41	NM_001302533	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.040000	0.537313	
mm_141906.1	chr17	34959032	34959232	-	1	NA	NA	NA	106	NM_010478	15511	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	0.100000	0.641791	
mm_38402.1	chr4	138968921	138969121	-	1	NA	NA	NA	1909	NM_025786	66825	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	0.040000	0.547264	
mm_121566.1	chr14	122557629	122557829	+	1	NA	NA	NA	23401	NM_144844	110821	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.005000	0.358209	
mm_61751.1	chr7	82770936	82771136	+	1	NA	NA	NA	-15392	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.005000	0.467662	
mm_161470.1	chr15	79124927	79125127	+	1	NA	NA	NA	16044	NM_177461	27008	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	0.005000	0.492537	
mm_100551.1	chr11	120721454	120721654	+	1	NA	NA	NA	86	NM_133223	170758	Mm.34008	NM_133223	ENSMUSG00000018012	Rac3	Rac1B	RAS-related C3 botulinum substrate 3	protein-coding	0.175000	0.761194	
mm_66423.1	chr7	44548692	44548892	-	1	NA	NA	NA	23	NM_011131	18971	Mm.16549	NM_011131	ENSMUSG00000038644	Pold1	125kDa	polymerase (DNA directed), delta 1, catalytic subunit	protein-coding	0.105000	0.661692	
mm_30131.1	chr3	142108358	142108558	-	1	NA	NA	NA	60770	NM_001277217	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.020000	0.432836	-27(TGCTTTAAAAAC,-,0.00)
mm_163535.1	chr13	10947320	10947520	-	1	NA	NA	NA	-574632	NR_027813	664793	Mm.410565	NR_027813		Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo	0.000000	0.407960	
mm_85706.1	chr9	108135303	108135503	-	1	NA	NA	NA	-1452	NR_126077	76873	Mm.436935	NR_126077	ENSMUSG00000102224	4930447F24Rik	-	RIKEN cDNA 4930447F24 gene	ncRNA	0.000000	0.467662	
mm_167942.1	chrX	118798997	118799197	+	1	NA	NA	NA	-318360	NM_001142750	100039551	Mm.272850	NM_001142750	ENSMUSG00000100194	Tgif2lx2	-	TGFB-induced factor homeobox 2-like, X-linked 2	protein-coding	0.010000	0.457711	-50(CAGCTTTAAAGC,-,0.00),-48(GCTTTAAAGCCC,+,0.00)
mm_16540.1	chr2	181650364	181650564	+	1	NA	NA	NA	21176	NM_009236	20672	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	0.010000	0.442786	-34(GACTATAAAAGA,-,0.00)
mm_88497.1	chr10	77837489	77837689	+	1	NA	NA	NA	1642	NM_001024709	544710	Mm.441890	NM_001024709		Krtap10-10	EG544710	keratin associated protein 10-10	protein-coding	0.025000	0.542289	
mm_134959.1	chr16	31314443	31314643	-	1	NA	NA	NA	265	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.010000	0.492537	-88(GCCTATAAAGTG,+,0.00)
mm_91683.1	chr10	43901586	43901786	-	1	NA	NA	NA	50	NM_001081054	76563	Mm.5904	NM_001081054	ENSMUSG00000019863	Qrsl1	2700038P16Rik|C80053|GatA	glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	protein-coding	0.075000	0.611940	
mm_5263.1	chr1	17015354	17015554	-	1	NA	NA	NA	82435	NM_020604	57339	Mm.143761	NM_020604	ENSMUSG00000042686	Jph1	ENSMUSG00000054314|JP-1|Jp1	junctophilin 1	protein-coding	0.005000	0.323383	
mm_116896.1	chr13	55375691	55375891	-	1	NA	NA	NA	6059	NM_016758	51791	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	0.025000	0.537313	
mm_137962.1	chr17	33432126	33432326	+	1	NA	NA	NA	-673	NM_183282	69481	Mm.154333	NM_183282	ENSMUSG00000092519	Actl9	1700029I08Rik|AV259599	actin-like 9	protein-coding	0.005000	0.472637	
mm_161314.1	chr14	43607965	43608165	-	1	NA	NA	NA	-52	NM_001098269	100042342	Mm.429750	NM_001098269	ENSMUSG00000095528	Gm10375	ENSMUSG00000072602	predicted gene 10375	protein-coding	0.000000	0.472637	
mm_105807.1	chr11	110251645	110251845	-	1	NA	NA	NA	31	NM_147218	76184	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	0.020000	0.467662	
mm_95548.1	chr11	52307683	52307883	+	1	NA	NA	NA	-24769	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.010000	0.606965	
mm_58025.1	chr6	136661783	136661983	-	1	NA	NA	NA	10	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.055000	0.611940	
mm_33939.1	chr4	136945553	136945753	+	1	NA	NA	NA	11163	NM_007939	13842	Mm.1390	NM_007939	ENSMUSG00000028661	Epha8	AW047546|Eek|Hek3|mKIAA1459	Eph receptor A8	protein-coding	0.040000	0.621891	
mm_122496.1	chr14	46673715	46673915	-	1	NA	NA	NA	-40	NR_131909	328385	Mm.271545	NR_131909		D330046F09Rik	Gm808	RIKEN cDNA D330046F09 gene	ncRNA	0.010000	0.437811	
mm_127124.1	chr15	98108391	98108591	+	1	NA	NA	NA	20	NM_001163487	18642	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	0.040000	0.621891	
mm_60647.1	chr7	44852700	44852900	+	1	NA	NA	NA	2793	NM_001253920	67605	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	0.060000	0.706468	
mm_26386.1	chr3	142570391	142570591	+	1	NA	NA	NA	9995	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.005000	0.388060	
mm_136212.1	chr16	89888616	89888816	-	1	NA	NA	NA	-70364	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.010000	0.522388	
mm_74204.1	chr8	123892777	123892977	+	1	NA	NA	NA	1898	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.065000	0.626866	
mm_108869.1	chr12	99562717	99562917	+	1	NA	NA	NA	-1024	NR_136760	102639404	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.025000	0.358209	
mm_103567.1	chr11	77884455	77884655	-	1	NA	NA	NA	9317	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding	0.010000	0.577114	
mm_44569.1	chr5	24730545	24730745	-	1	NA	NA	NA	35	NM_001081441	269633	Mm.392539	NM_026621	ENSMUSG00000055235	Wdr86	2810046M22Rik|BC059069	WD repeat domain 86	protein-coding	0.060000	0.641791	
mm_143916.1	chr17	85615044	85615244	-	1	NA	NA	NA	3252	NR_038084	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.080000	0.691542	-35(GGCTCTTTAAGA,-,0.00),-33(CTCTTTAAGAGC,-,0.00),-32(TCTTTAAGAGCC,+,0.00)
mm_172315.1	chr7	105953904	105954104	-	1	NA	NA	NA	-34	NM_029000	74558	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0.005000	0.492537	20(CCTCATAGAGCC,+,0.00)
mm_76624.1	chr8	91801345	91801545	-	1	NA	NA	NA	209	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.125000	0.696517	
mm_40668.1	chr5	65391494	65391694	+	1	NA	NA	NA	97	NM_001310612	79464	Mm.195776	NM_024471	ENSMUSG00000029199	Lias	2900022L22Rik|4933425M12Rik|7a5ex|C77512|LS|lip-syn	lipoic acid synthetase	protein-coding	0.120000	0.646766	
mm_150147.1	chr19	31910666	31910866	+	1	NA	NA	NA	42005	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.010000	0.388060	
mm_117309.1	chr13	67484147	67484347	-	1	NA	NA	NA	6	NM_001076791	408067	Mm.315879	NM_001076791	ENSMUSG00000059839	Zfp874b	9630025I21Rik|Rslcan16	zinc finger protein 874b	protein-coding	0.035000	0.502488	
mm_57816.1	chr6	129462564	129462764	-	1	NA	NA	NA	10115	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.393035	7(GACTTTAAAAGC,-,0.00),8(ACTTTAAAAGCC,+,0.00)
mm_38360.1	chr4	137993194	137993394	-	1	NA	NA	NA	-162	NM_001256198	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.130000	0.666667	
mm_146269.1	chr18	77875304	77875504	+	1	NA	NA	NA	-63063	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.010000	0.467662	
mm_99418.1	chr11	102309199	102309399	+	1	NA	NA	NA	7988	NM_001044383	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.060000	0.616915	
mm_81066.1	chr9	106178825	106179025	+	1	NA	NA	NA	85	NR_029526	387249		NR_029526	ENSMUSG00000065440	Mirlet7g	Mirnlet7g|let-7g|mmu-let-7g	microRNA let7g	ncRNA	0.005000	0.517413	
mm_46498.1	chr5	105133313	105133513	-	1	NA	NA	NA	6139	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.343284	21(GCCTATATAAAA,-,0.00)
mm_98452.1	chr11	94945469	94945669	+	1	NA	NA	NA	9345	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.035000	0.577114	
mm_11244.1	chr2	29889974	29890174	+	1	NA	NA	NA	11	NM_013615	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.135000	0.766169	
mm_58394.1	chr7	3206993	3207193	+	1	NA	NA	NA	-11533	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.025000	0.482587	
mm_164658.1	chr17	37410444	37410644	+	1	NA	NA	NA	5067	NM_146511	258504	Mm.377541	NM_146511	ENSMUSG00000063188	Olfr107	MOR156-3	olfactory receptor 107	protein-coding	0.000000	0.482587	
mm_122671.1	chr14	51923059	51923259	-	1	NA	NA	NA	-386	NM_001011687	497071	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	0.005000	0.527363	
mm_166421.1	chr5	137151642	137151842	+	1	NA	NA	NA	-35535	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.482587	
mm_84878.1	chr9	79718660	79718860	-	1	NA	NA	NA	-38	NM_001290308	12816	Mm.3819	NM_007730	ENSMUSG00000032332	Col12a1	-	collagen, type XII, alpha 1	protein-coding	0.080000	0.587065	
mm_88081.1	chr10	68042144	68042344	+	1	NA	NA	NA	62646	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.005000	0.308458	
mm_94022.1	chr10	127666816	127667016	-	1	NA	NA	NA	-207	NR_045171	72243	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0.085000	0.721393	
mm_804.1	chr1	45348707	45348907	+	1	NA	NA	NA	37269	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.000000	0.333333	-69(CTTTTTATAAGC,+,0.00),-69(CTTTTTATAAGC,-,0.00)
mm_167028.1	chr7	68282601	68282801	-	1	NA	NA	NA	-6107	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.030000	0.442786	
mm_162313.1	chr1	37997891	37998091	+	1	NA	NA	NA	-19	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.135000	0.691542	
mm_73529.1	chr8	108612122	108612322	+	1	NA	NA	NA	-27545	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.020000	0.517413	
mm_40516.1	chr5	57821816	57822016	+	1	NA	NA	NA	103835	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.005000	0.343284	
mm_141481.1	chr17	31198867	31199067	-	1	NA	NA	NA	7	NM_001163776	140765	Mm.214638	NM_080727	ENSMUSG00000024034	Tmprss3	-	transmembrane protease, serine 3	protein-coding	0.035000	0.532338	
mm_123924.1	chr14	73365574	73365774	-	1	NA	NA	NA	19597	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.010000	0.328358	
mm_105988.1	chr11	115627651	115627851	-	1	NA	NA	NA	544	NM_001252394	67283	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.055000	0.621891	
mm_53968.1	chr6	6056149	6056349	-	1	NA	NA	NA	-78856	NR_040255	72249	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA	0.020000	0.388060	
mm_51156.1	chr6	70722418	70722618	+	1	NA	NA	NA	69657	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.030000	0.517413	
mm_159441.1	chr3	126363772	126363972	+	1	NA	NA	NA	20	NM_173451	271970	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	0.065000	0.656716	
mm_24678.1	chr3	94837588	94837788	+	1	NA	NA	NA	121	NM_172683	229584	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	0.100000	0.701493	-8(GTCCCTTTAAGG,-,0.00),-6(CCCTTTAAGGCG,+,0.00),-5(CCTTTAAGGCGA,+,0.00)
mm_142402.1	chr17	45433628	45433828	-	1	NA	NA	NA	-21	NM_152810	71702	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0.085000	0.611940	
mm_98664.1	chr11	96282137	96282337	+	1	NA	NA	NA	332	NM_010461	15416	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	0.020000	0.477612	
mm_136783.1	chr17	10496321	10496521	+	1	NA	NA	NA	40205	NR_077238	319750	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.035000	0.557214	
mm_159553.1	chr4	103115449	103115649	+	1	NA	NA	NA	-11	NM_001286221	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.030000	0.497512	
mm_19060.1	chr2	77316792	77316992	-	1	NA	NA	NA	-36300	NM_175465	228071	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.020000	0.442786	
mm_78574.1	chr9	36693152	36693352	+	1	NA	NA	NA	32	NM_007391	11451	Mm.4776	NM_007391	ENSMUSG00000032110	Acrv1	Msa63|SP-10	acrosomal vesicle protein 1	protein-coding	0.005000	0.407960	
mm_104556.1	chr11	96823906	96824106	-	1	NA	NA	NA	7	NM_001130453	18023	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	0.045000	0.661692	
mm_61534.1	chr7	79053195	79053395	+	1	NA	NA	NA	28	NR_132432	102633600	Mm.382916	NR_132432	ENSMUSG00000097441	Gm26633	-	predicted gene, 26633	ncRNA	0.085000	0.641791	
mm_86979.1	chr10	25436825	25437025	+	1	NA	NA	NA	28557	NM_013511	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.010000	0.487562	
mm_116577.1	chr13	47105515	47105715	-	1	NA	NA	NA	606	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.070000	0.601990	
mm_153731.1	chr19	44408646	44408846	-	1	NA	NA	NA	-1037	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.447761	-40(CTTTTTAAAAAG,+,0.00),-40(CTTTTTAAAAAG,-,0.00)
mm_103826.1	chr11	83012357	83012557	-	1	NA	NA	NA	8265	NM_001167743	276950	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0.000000	0.303483	
mm_99067.1	chr11	99168216	99168416	+	1	NA	NA	NA	-13239	NM_007719	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.015000	0.532338	
mm_156398.1	chrX	139808447	139808647	+	1	NA	NA	NA	7739	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.010000	0.417910	
mm_73301.1	chr8	105131727	105131927	+	1	NA	NA	NA	27	NM_146213	234677	Mm.120297	NM_146213	ENSMUSG00000060560	Ces4a	Ces8	carboxylesterase 4A	protein-coding	0.015000	0.542289	
mm_110576.1	chr12	56497455	56497655	-	1	NA	NA	NA	31865	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.000000	0.313433	
mm_98104.1	chr11	86757823	86758023	+	1	NA	NA	NA	-431	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.080000	0.676617	
mm_162690.1	chr10	19589592	19589792	+	1	NA	NA	NA	-2257	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.025000	0.487562	
mm_49737.1	chr6	34745662	34745862	+	1	NA	NA	NA	-34670	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.050000	0.522388	
mm_164763.1	chr17	85620936	85621136	+	1	NA	NA	NA	202	NM_011381	20473	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0.045000	0.611940	
mm_62765.1	chr7	112238408	112238608	+	1	NA	NA	NA	12672	NM_001193305	320878	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0.005000	0.492537	
mm_90798.1	chr10	7212553	7212753	-	1	NA	NA	NA	-416	NM_172546	215748	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.030000	0.422886	
mm_131058.1	chr16	4276305	4276505	+	1	NA	NA	NA	47176	NR_003628	436332	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	0.010000	0.452736	
mm_139825.1	chr17	68187840	68188040	+	1	NA	NA	NA	-85857	NM_177278	320858	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	l(3)mbt-like 4 (Drosophila)	protein-coding	0.000000	0.477612	
mm_22836.1	chr3	27482431	27482631	+	1	NA	NA	NA	102464	NR_037275	100526525		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.010000	0.492537	
mm_10725.1	chr2	22860645	22860845	+	1	NA	NA	NA	-34777	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.005000	0.333333	
mm_76983.1	chr8	106928351	106928551	-	1	NA	NA	NA	-7299	NM_009229	20650	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0.035000	0.432836	
mm_13658.1	chr2	114055123	114055323	+	1	NA	NA	NA	827	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.025000	0.497512	
mm_21618.1	chr2	164275977	164276177	-	1	NA	NA	NA	2230	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.020000	0.487562	
mm_117722.1	chr13	95444792	95444992	-	1	NA	NA	NA	-61	NM_198408	12919	Mm.316614	NM_198408	ENSMUSG00000021680	Crhbp	CRH-BP	corticotropin releasing hormone binding protein	protein-coding	0.030000	0.502488	88(CTCTATAAAAGA,-,0.00)
mm_97008.1	chr11	70929699	70929899	+	1	NA	NA	NA	40174	NM_172394	19069	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	0.000000	0.432836	
mm_9353.1	chr1	172082664	172082864	-	1	NA	NA	NA	-15	NM_021607	59287	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	0.085000	0.656716	
mm_38099.1	chr4	134254002	134254202	-	1	NA	NA	NA	4	NM_001099296	72690	Mm.100168	NM_001099296	ENSMUSG00000050105	Grrp1	2810043G13Rik|Fam110d	glycine/arginine rich protein 1	protein-coding	0.040000	0.587065	
mm_21535.1	chr2	163690588	163690788	-	1	NA	NA	NA	-3349	NM_011106	18769	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.015000	0.601990	
mm_53220.1	chr6	126921839	126922039	+	1	NA	NA	NA	-100	NM_207210	101320	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	0.025000	0.517413	
mm_129891.1	chr15	83518847	83519047	-	1	NA	NA	NA	-7915	NM_007546	12124	Mm.267006	NM_007546	ENSMUSG00000016758	Bik	Biklk|Blk|Nbk	BCL2-interacting killer	protein-coding	0.025000	0.562189	-34(TGCCATAAAGAG,-,0.00)
mm_135417.1	chr16	45158502	45158702	-	1	NA	NA	NA	71	NM_028756	74102	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	0.065000	0.552239	
mm_125382.1	chr15	40655163	40655363	+	1	NA	NA	NA	221	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding	0.035000	0.611940	
mm_148485.1	chr19	4148591	4148791	+	1	NA	NA	NA	28	NM_011778	23789	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0.110000	0.746269	
mm_105445.1	chr11	104441737	104441937	-	1	NA	NA	NA	454	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.135000	0.796020	
mm_135694.1	chr16	52438230	52438430	-	1	NA	NA	NA	14751	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.368159	
mm_81207.1	chr9	107576846	107577046	+	1	NA	NA	NA	19	NM_001331161	15586	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	0.035000	0.601990	
mm_140510.1	chr17	5493886	5494086	-	1	NA	NA	NA	1386	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.010000	0.537313	
mm_67289.1	chr7	78737916	78738116	-	1	NA	NA	NA	-19796	NR_015542	414121	Mm.482537	NR_015542	ENSMUSG00000059146	E430016F16Rik	-	RIKEN cDNA E430016F16 gene	ncRNA	0.020000	0.432836	
mm_20649.1	chr2	132053196	132053396	-	1	NA	NA	NA	-23308	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.020000	0.552239	
mm_46250.1	chr5	99249721	99249921	-	1	NA	NA	NA	3106	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.005000	0.388060	
mm_33468.1	chr4	130812496	130812696	+	1	NA	NA	NA	20059	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.010000	0.582090	
mm_86337.1	chr9	123113221	123113421	-	1	NA	NA	NA	90	NM_001081188	66446	Mm.41562	NM_001081188	ENSMUSG00000025785	Exosc7	2610002K22Rik|AV212732|mKIAA0116	exosome component 7	protein-coding	0.125000	0.686567	
mm_173204.1	chrX	69606010	69606210	-	1	NA	NA	NA	245779	NM_008032	14266	Mm.466576	NM_008032	ENSMUSG00000031189	Aff2	FMR2P|Fmr2|Ox19|Oxh	AF4/FMR2 family, member 2	protein-coding	0.050000	0.547264	
mm_23957.1	chr3	84925382	84925582	+	1	NA	NA	NA	-26729	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.010000	0.462687	68(GCCTTTTAAAAC,-,0.00),69(CCTTTTAAAACT,+,0.00)
mm_100044.1	chr11	115154067	115154267	+	1	NA	NA	NA	-11	NM_021411	58222	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.065000	0.686567	
mm_80794.1	chr9	96196221	96196421	+	1	NA	NA	NA	46	NM_001184706	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.185000	0.771144	
mm_42596.1	chr5	117413716	117413916	+	1	NA	NA	NA	-186	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.115000	0.800995	
mm_27118.1	chr3	31207971	31208171	-	1	NA	NA	NA	58151	NM_008770	18417	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.010000	0.412935	
mm_25015.1	chr3	97992367	97992567	+	1	NA	NA	NA	-21071	NM_010928	18129	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.010000	0.383085	
mm_77512.1	chr8	122893856	122894056	-	1	NA	NA	NA	45582	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.020000	0.447761	49(TGCTTTAAAGAG,-,0.00)
mm_54903.1	chr6	47563173	47563373	-	1	NA	NA	NA	31757	NM_007971	14056	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.000000	0.383085	
mm_54894.1	chr6	47044482	47044682	-	1	NA	NA	NA	-199814	NM_025771	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.040000	0.482587	
mm_93271.1	chr10	95778864	95779064	-	1	NA	NA	NA	-161699	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.020000	0.482587	
mm_78688.1	chr9	40801809	40802009	+	1	NA	NA	NA	636	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.030000	0.522388	
mm_130296.1	chr15	97013497	97013697	-	1	NA	NA	NA	42359	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.025000	0.412935	
mm_134460.1	chr16	18426281	18426481	-	1	NA	NA	NA	-36	NM_013711	26462	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0.105000	0.701493	
mm_35050.1	chr4	6352785	6352985	-	1	NA	NA	NA	-12795	NM_016807	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.000000	0.412935	
mm_74694.1	chr8	15027542	15027742	-	1	NA	NA	NA	16617	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.130000	0.726368	
mm_13796.1	chr2	118901503	118901703	+	1	NA	NA	NA	-12	NM_001045523	228536	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0.155000	0.840796	
mm_131409.1	chr16	14458519	14458719	+	1	NA	NA	NA	97061	NM_008576	17250	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.010000	0.333333	
mm_110504.1	chr12	54649774	54649974	-	1	NA	NA	NA	-3862	NR_035439	100316682		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	0.005000	0.378109	
mm_39235.1	chr4	156254730	156254930	-	1	NA	NA	NA	508	NM_001110516	231004	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	0.025000	0.562189	
mm_101189.1	chr11	17211483	17211683	-	1	NA	NA	NA	6	NM_025443	66249	Mm.27831	NM_025443	ENSMUSG00000020116	Pno1	1810003N24Rik|AA407421|AU015468|AU019495|AU042323|Emi3|Imi3	partner of NOB1 homolog	protein-coding	0.075000	0.577114	
mm_60056.1	chr7	31149972	31150172	+	1	NA	NA	NA	978	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.025000	0.457711	
mm_45423.1	chr5	66618574	66618774	-	1	NA	NA	NA	143	NM_009686	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.115000	0.696517	
mm_42320.1	chr5	114897510	114897710	+	1	NA	NA	NA	676	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.025000	0.557214	
mm_165986.1	chr4	107981590	107981790	+	1	NA	NA	NA	13356	NM_146255	242607	Mm.192040	NM_146255	ENSMUSG00000008932	Slc1a7	A930031E15Rik|Eaat5	solute carrier family 1 (glutamate transporter), member 7	protein-coding	0.020000	0.507463	
mm_10889.1	chr2	25263116	25263316	+	1	NA	NA	NA	618	NM_175286	97031	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0.115000	0.726368	
mm_113509.1	chr13	37700900	37701100	+	1	NA	NA	NA	-125038	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.040000	0.542289	
mm_169505.1	chr14	78997304	78997504	+	1	NA	NA	NA	148226	NM_173758	219189	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	0.075000	0.641791	
mm_6783.1	chr1	84139233	84139433	-	1	NA	NA	NA	79628	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.338308	
mm_18950.1	chr2	76784418	76784618	-	1	NA	NA	NA	109203	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.025000	0.467662	
mm_12171.1	chr2	62664190	62664390	+	1	NA	NA	NA	-37	NM_145523	227960	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0.085000	0.686567	
mm_159852.1	chr5	137485534	137485734	-	1	NA	NA	NA	182	NM_007942	13856	Mm.349116	NM_007942	ENSMUSG00000029711	Epo	-	erythropoietin	protein-coding	0.030000	0.552239	
mm_51614.1	chr6	85105344	85105544	+	1	NA	NA	NA	20650	NM_001034902	545861	Mm.321419	NM_001034902	ENSMUSG00000072952	Gm5878	EG545861	predicted gene 5878	protein-coding	0.020000	0.467662	50(GCTTATATGGCA,+,0.00)
mm_98253.1	chr11	88619606	88619806	+	1	NA	NA	NA	455	NR_131025	68397	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	0.015000	0.562189	
mm_132172.1	chr16	32324226	32324426	+	1	NA	NA	NA	-7926	NM_177633	224111	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	0.020000	0.547264	-35(CACTATAAAAGG,-,0.00)
mm_145274.1	chr18	52800984	52801184	+	1	NA	NA	NA	32940	NM_001199154	67847	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0.010000	0.343284	
mm_129639.1	chr15	80255755	80255955	-	1	NA	NA	NA	671	NM_009716	11911	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	0.115000	0.651741	
mm_43178.1	chr5	127700525	127700725	+	1	NA	NA	NA	68363	NM_177005	319804	Mm.237888	NM_177005	ENSMUSG00000049971	Glt1d1	5730455A04Rik	glycosyltransferase 1 domain containing 1	protein-coding	0.000000	0.323383	
mm_61373.1	chr7	70364992	70365192	+	1	NA	NA	NA	-291	NR_045850	434198	Mm.389911	NR_045850	ENSMUSG00000100005	B130024G19Rik	-	RIKEN cDNA B130024G19 gene	ncRNA	0.010000	0.402985	-32(AACTTTAAAAGA,-,0.00),-15(AGCCCTTAAAGG,-,0.00),-14(GCCCTTAAAGGG,-,0.00),-13(CCCTTAAAGGGA,+,0.00),-12(CCTTAAAGGGAA,+,0.00)
mm_144587.1	chr18	31957927	31958127	+	1	NA	NA	NA	-8391	NM_001025381	574402	Mm.391108	NM_001025381	ENSMUSG00000052229	Gpr17	AI853548	G protein-coupled receptor 17	protein-coding	0.035000	0.626866	
mm_140105.1	chr17	78560915	78561115	+	1	NA	NA	NA	52952	NM_028813	74199	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik	vitrin	protein-coding	0.030000	0.527363	
mm_51061.1	chr6	65789909	65790109	+	1	NA	NA	NA	11047	NM_029549	70779	Mm.263355	NM_027547	ENSMUSG00000029913	Prdm5	4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2	PR domain containing 5	protein-coding	0.000000	0.417910	
mm_27012.1	chr3	25936642	25936842	-	1	NA	NA	NA	216565	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.010000	0.373134	
mm_1887.1	chr1	85680990	85681190	+	1	NA	NA	NA	31102	NM_001313714	20684	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.015000	0.353234	
mm_32296.1	chr4	103119287	103119487	+	1	NA	NA	NA	-3	NM_001039081	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.185000	0.815920	
mm_123468.1	chr14	65973306	65973506	-	1	NA	NA	NA	4923	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.020000	0.482587	
mm_53571.1	chr6	137376461	137376661	+	1	NA	NA	NA	-34160	NM_001164402	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.010000	0.388060	
mm_100451.1	chr11	119671199	119671399	+	1	NA	NA	NA	68394	NM_028898	74370	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	0.015000	0.517413	
mm_170000.1	chr1	71651453	71651653	-	1	NA	NA	NA	1681	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.025000	0.522388	
mm_155694.1	chrX	94274681	94274881	+	1	NA	NA	NA	207	NR_106133	102466238		NR_106133	ENSMUSG00000099072	Mir7673	Gm27569|mmu-mir-7673	microRNA 7673	ncRNA	0.000000	0.278607	60(TTGTTTTAAAGG,-,0.00)
mm_51816.1	chr6	88902395	88902595	+	1	NA	NA	NA	244	NM_011906	24100	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.115000	0.701493	
mm_22810.1	chr3	27182906	27183106	+	1	NA	NA	NA	2	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.090000	0.656716	
mm_80287.1	chr9	73064073	73064273	+	1	NA	NA	NA	25	NM_001301232	11891	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	0.025000	0.472637	
mm_58403.1	chr7	3218614	3218814	+	1	NA	NA	NA	-19	NR_106158	102465789		NR_106158	ENSMUSG00000106340	Mir290b	mmu-mir-290b	microRNA 290b	ncRNA	0.065000	0.502488	-48(TTCTTTAAAAAG,-,0.00),-46(CTTTAAAAAGTG,+,0.00)
mm_172786.1	chr9	103849241	103849441	+	1	NA	NA	NA	-87504	NM_178638	81907	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding	0.010000	0.298507	
mm_134010.1	chr16	4875737	4875937	-	1	NA	NA	NA	4014	NM_145359	207740	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.035000	0.621891	
mm_40772.1	chr5	67260582	67260782	+	1	NA	NA	NA	117	NM_030108	67878	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	0.090000	0.567164	41(GGCCCTTTAAGG,-,0.00),42(GCCCTTTAAGGC,-,0.00),43(CCCTTTAAGGCC,+,0.00)
mm_89702.1	chr10	97646999	97647199	+	1	NA	NA	NA	3031	NM_007884	13516	Mm.148886	NM_007884	ENSMUSG00000019936	Epyc	Dspg3|PG-Lb|SLRR3B	epiphycan	protein-coding	0.010000	0.318408	
mm_140181.1	chr17	80944528	80944728	+	1	NA	NA	NA	-4	NM_026516	68027	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0.130000	0.776119	
mm_126508.1	chr15	81802647	81802847	+	1	NA	NA	NA	74	NM_153484	21685	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.020000	0.661692	
mm_74440.1	chr8	3803257	3803457	-	1	NA	NA	NA	4	NR_024198	19785		NR_024198		Rprl3	RPRH4|Rmrp4	ribonuclease P RNA-like 3	ncRNA	0.035000	0.527363	
mm_150360.1	chr19	34649075	34649275	+	1	NA	NA	NA	8286	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.005000	0.383085	
mm_119458.1	chr14	47068843	47069043	+	1	NA	NA	NA	-34	NM_001310544	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.025000	0.517413	
mm_98958.1	chr11	98551035	98551235	+	1	NA	NA	NA	38	NM_001166494	69376	Mm.55996	NM_027061	ENSMUSG00000017195	Zpbp2	1700017D11Rik|2610022C02Rik|ZPBPL	zona pellucida binding protein 2	protein-coding	0.100000	0.696517	
mm_165480.1	chr2	164333320	164333520	+	1	NA	NA	NA	655	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.045000	0.497512	
mm_75468.1	chr8	47990281	47990481	-	1	NA	NA	NA	170	NM_133791	52357	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.110000	0.736318	
mm_38838.1	chr4	149165074	149165274	-	1	NA	NA	NA	1533	NM_001081274	110208	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.030000	0.547264	28(GTCCTTAAAGGA,-,0.00)
mm_67450.1	chr7	80398679	80398879	-	1	NA	NA	NA	4033	NM_011046	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.025000	0.656716	
mm_20810.1	chr2	144365584	144365784	-	1	NA	NA	NA	-3299	NM_001164813	100048644	Mm.227925	NM_001164813	ENSMUSG00000098387	Pet117	Gm20571	PET117 homolog	protein-coding	0.010000	0.487562	
mm_37354.1	chr4	120287577	120287777	-	1	NA	NA	NA	-416	NM_194060	329934	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	0.170000	0.820896	
mm_113837.1	chr13	47193736	47193936	+	1	NA	NA	NA	-167	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.060000	0.597015	
mm_115497.1	chr13	3893430	3893630	-	1	NA	NA	NA	51	NM_001047159	56349	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0.095000	0.696517	
mm_1228.1	chr1	62762856	62763056	+	1	NA	NA	NA	31776	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.020000	0.542289	
mm_103610.1	chr11	78536061	78536261	-	1	NA	NA	NA	99	NM_001159392	21927	Mm.386774	NM_009395	ENSMUSG00000017615	Tnfaip1	Bacurd2|Edp-1|Edp1|Tnfip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	protein-coding	0.080000	0.641791	
mm_18045.1	chr2	39007901	39008101	-	1	NA	NA	NA	-138	NM_028809	74192	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	0.115000	0.681592	
mm_157264.1	chrX	19168211	19168411	-	1	NA	NA	NA	-21340	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.000000	0.467662	
mm_28426.1	chr3	90464476	90464676	-	1	NA	NA	NA	1290	NM_008727	18160	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.040000	0.547264	
mm_3608.1	chr1	151755266	151755466	+	1	NA	NA	NA	-8	NM_001311165	66967	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0.095000	0.671642	
mm_142494.1	chr17	46018576	46018776	-	1	NA	NA	NA	6487	NM_001110267	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.070000	0.562189	
mm_12844.1	chr2	82943534	82943734	+	1	NA	NA	NA	-700944	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.055000	0.601990	
mm_22428.1	chr2	181599082	181599282	-	1	NA	NA	NA	-35	NM_172676	229011	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	0.140000	0.741294	
mm_41481.1	chr5	91963222	91963422	+	1	NA	NA	NA	-254	NM_001271797	68098	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0.045000	0.557214	
mm_18419.1	chr2	60722547	60722747	-	1	NA	NA	NA	-44	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.050000	0.502488	
mm_120567.1	chr14	68765507	68765707	+	1	NA	NA	NA	-109765	NM_183366	13522	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	0.000000	0.487562	
mm_156565.1	chrX	151883388	151883588	+	1	NA	NA	NA	23926	NR_130340	100526542		NR_130340	ENSMUSG00000093219	Mir3113	mmu-mir-3113	microRNA 3113	ncRNA	0.000000	0.343284	
mm_118200.1	chr13	107889980	107890180	-	1	NA	NA	NA	-16	NM_145456	67263	Mm.490418	NM_145456	ENSMUSG00000032846	Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.155000	0.726368	-20(CCGTTTATAGGG,-,0.00)
mm_164367.1	chr16	23981090	23981290	-	1	NA	NA	NA	7422	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.060000	0.567164	
mm_53253.1	chr6	127796348	127796548	+	1	NA	NA	NA	-8305	NR_106092	102466996		NR_106092	ENSMUSG00000104804	Mir7233	mmu-mir-7233	microRNA 7233	ncRNA	0.010000	0.497512	
mm_46214.1	chr5	98185973	98186173	-	1	NA	NA	NA	5204	NM_029947	77630	Mm.332511	NM_029947	ENSMUSG00000035456	Prdm8	4930565F05Rik|PFM5	PR domain containing 8	protein-coding	0.150000	0.761194	
mm_340.1	chr1	30721987	30722187	+	1	NA	NA	NA	141169	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding	0.000000	0.447761	
mm_27458.1	chr3	52104908	52105108	-	1	NA	NA	NA	-2	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.115000	0.706468	
mm_45530.1	chr5	72736458	72736658	-	1	NA	NA	NA	44	NM_013698	22165	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.025000	0.517413	
mm_31585.1	chr4	57813161	57813361	+	1	NA	NA	NA	-31987	NM_009649	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.005000	0.388060	
mm_1247.1	chr1	62809752	62809952	+	1	NA	NA	NA	-15120	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.015000	0.492537	
mm_29047.1	chr3	103384882	103385082	-	1	NA	NA	NA	105689	NM_001079830	94093	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.015000	0.427861	
mm_98874.1	chr11	97799666	97799866	+	1	NA	NA	NA	94	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.090000	0.636816	
mm_56381.1	chr6	94283710	94283910	-	1	NA	NA	NA	107	NM_001286786	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.125000	0.686567	-27(CTGCTTAAAGGG,-,0.00),-25(GCTTAAAGGGGC,+,0.00)
mm_41118.1	chr5	87781693	87781893	+	1	NA	NA	NA	7343	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.005000	0.442786	
mm_160873.1	chr11	68556073	68556273	+	1	NA	NA	NA	-13	NM_146004	215723	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	0.080000	0.666667	
mm_156734.1	chrX	159942757	159942957	+	1	NA	NA	NA	164	NM_001290664	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.000000	0.482587	-25(TTCCTTAAAAGG,-,0.00),-24(TCCTTAAAAGGG,+,0.00),-23(CCTTAAAAGGGA,+,0.00)
mm_98539.1	chr11	95009898	95010098	+	1	NA	NA	NA	119	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.115000	0.731343	
mm_96417.1	chr11	67255562	67255762	+	1	NA	NA	NA	17850	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.025000	0.507463	
mm_126797.1	chr15	86468900	86469100	+	1	NA	NA	NA	254541	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.000000	0.442786	-50(TCTTTTATAGGA,+,0.00)
mm_115605.1	chr13	11991365	11991565	-	1	NA	NA	NA	115480	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.000000	0.278607	
mm_158177.1	chrX	103960762	103960962	-	1	NA	NA	NA	20422	NM_011276	19820	Mm.427762	NM_011276	ENSMUSG00000056537	Rlim	AL022832|AW743871|Ha1r|Rlim1|Rnf12	ring finger protein, LIM domain interacting	protein-coding	0.005000	0.407960	
mm_65475.1	chr7	25539710	25539910	-	1	NA	NA	NA	194	NM_001113368	26367	Mm.439731	NM_007543	ENSMUSG00000054385	Ceacam2	AI267129|Bgp2|Ceacam2-L	carcinoembryonic antigen-related cell adhesion molecule 2	protein-coding	0.005000	0.552239	
mm_8569.1	chr1	155526987	155527187	-	1	NA	NA	NA	24	NR_132128	433367	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0.025000	0.502488	
mm_171727.1	chr4	89617786	89617986	+	1	NA	NA	NA	-70312	NM_175647	242523	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	0.040000	0.606965	
mm_75009.1	chr8	27296207	27296407	-	1	NA	NA	NA	262	NR_003107	732482	Mm.463248	NR_003107		Gm9731	-	Fam58a pseudogene	pseudo	0.035000	0.502488	
mm_173218.1	chrX	74242957	74243157	-	1	NA	NA	NA	3477	NM_010227	192176	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	0.005000	0.502488	
mm_100099.1	chr11	115699518	115699718	+	1	NA	NA	NA	-84	NM_001313937	14784	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.025000	0.557214	87(CCACTTAAAGAC,+,0.00)
mm_4086.1	chr1	167001325	167001525	+	1	NA	NA	NA	8	NM_001160261	226610	Mm.389217	NM_175461	ENSMUSG00000060568	Fam78b	C030014K22Rik|C030020L09Rik	family with sequence similarity 78, member B	protein-coding	0.165000	0.796020	
mm_26434.1	chr3	142620556	142620756	+	1	NA	NA	NA	-7	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.010000	0.487562	
mm_163895.1	chr14	27351598	27351798	-	1	NA	NA	NA	-9691	NM_001289688	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.010000	0.457711	
mm_103642.1	chr11	78965622	78965822	-	1	NA	NA	NA	19202	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.025000	0.547264	
mm_9425.1	chr1	172475083	172475283	-	1	NA	NA	NA	-177	NM_029612	98365	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	0.025000	0.502488	
mm_27585.1	chr3	59116371	59116571	-	1	NA	NA	NA	14291	NM_001008497	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.000000	0.432836	
mm_169748.1	chr15	88333827	88334027	+	1	NA	NA	NA	19053	NR_045281	328579	Mm.146839	NR_045281		B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	0.015000	0.492537	
mm_126629.1	chr15	83464716	83464916	+	1	NA	NA	NA	-210	NM_001159509	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.035000	0.532338	41(TTTTTTAAAGTG,+,0.00)
mm_12747.1	chr2	79231166	79231366	+	1	NA	NA	NA	-24160	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.000000	0.432836	
mm_171706.1	chr4	74675514	74675714	+	1	NA	NA	NA	423735	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.040000	0.527363	
mm_72272.1	chr8	75099911	75100111	+	1	NA	NA	NA	6393	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.005000	0.547264	
mm_4928.1	chr1	191062920	191063120	+	1	NA	NA	NA	-1	NM_198654	381318	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	0.105000	0.656716	
mm_81237.1	chr9	107928339	107928539	+	1	NA	NA	NA	-30	NM_026338	67722	Mm.390222	NM_026338	ENSMUSG00000066368	Actl11	4921517D21Rik	actin-like 11	protein-coding	0.005000	0.611940	
mm_78199.1	chr9	21368400	21368600	+	1	NA	NA	NA	-32	NM_001277322	16201	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.075000	0.611940	
mm_77080.1	chr8	110502958	110503158	-	1	NA	NA	NA	-702	NR_105058	100861869	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.050000	0.577114	
mm_115740.1	chr13	17805041	17805241	-	1	NA	NA	NA	-44	NM_027118	69562	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.200000	0.830846	
mm_100532.1	chr11	120608378	120608578	+	1	NA	NA	NA	1	NM_001347616	208990	Mm.29444	NM_153288	ENSMUSG00000044034	Npb	-	neuropeptide B	protein-coding	0.060000	0.641791	
mm_7650.1	chr1	128319129	128319329	-	1	NA	NA	NA	9089	NM_001081078	226413	Mm.26930	NM_001081078	ENSMUSG00000026354	Lct	Gm100|LAC|LPH|Lphl	lactase	protein-coding	0.000000	0.368159	-45(GTCTCTTAAAGA,-,0.00),-42(TCTTAAAGAGAC,+,0.00)
mm_61716.1	chr7	81588780	81588980	+	1	NA	NA	NA	17588	NM_001004185	434204	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	0.010000	0.452736	
mm_8761.1	chr1	160784006	160784206	-	1	NA	NA	NA	8832	NM_013862	29809	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0.000000	0.422886	
mm_28363.1	chr3	89870136	89870336	-	1	NA	NA	NA	38866	NM_172530	214547	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.020000	0.452736	-46(GTTTTTAGAGAA,+,0.00)
mm_151823.1	chr19	5609952	5610152	-	1	NA	NA	NA	42	NM_001199249	81601	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	0.055000	0.656716	
mm_140473.1	chr17	94750008	94750208	+	1	NA	NA	NA	8	NR_024720	77022	Mm.440259	NR_024720	ENSMUSG00000098090	2700099C18Rik	9430041D22Rik	NDC80 homolog, kinetochore complex component pseudogene	pseudo	0.125000	0.606965	
mm_35443.1	chr4	40220492	40220692	-	1	NA	NA	NA	19233	NM_172689	230073	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.020000	0.532338	-7(TGGCTTTAAAGG,-,0.00),-6(GGCTTTAAAGGA,-,0.00),-5(GCTTTAAAGGAC,+,0.00)
mm_34199.1	chr4	140720454	140720654	+	1	NA	NA	NA	19081	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.030000	0.572139	
mm_65791.1	chr7	28894064	28894264	-	1	NA	NA	NA	12508	NM_001110807	60594	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	0.010000	0.611940	
mm_144894.1	chr18	36967535	36967735	+	1	NA	NA	NA	4	NM_001301256	103611158		NM_001301256		Gm38666	Pcdha6-g	predicted gene, 38666	protein-coding	0.035000	0.422886	
mm_90617.1	chr10	128411550	128411750	+	1	NA	NA	NA	34	NM_026259	67588	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	0.080000	0.626866	
mm_44527.1	chr5	24423427	24423627	-	1	NA	NA	NA	3	NM_007668	12568	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding	0.060000	0.616915	
mm_120297.1	chr14	63138357	63138557	+	1	NA	NA	NA	15995	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.542289	
mm_71331.1	chr8	45051425	45051625	+	1	NA	NA	NA	13893	NR_033588	434310	Mm.334512	NR_033588	ENSMUSG00000066158	AY512931	-	cDNA sequence AY512931	ncRNA	0.065000	0.552239	
mm_36940.1	chr4	108638530	108638730	-	1	NA	NA	NA	18674	NM_177045	319965	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	0.005000	0.398010	
mm_617.1	chr1	40084641	40084841	+	1	NA	NA	NA	-27	NM_010555	16178	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.000000	0.532338	
mm_19.1	chr1	5083112	5083312	+	1	NA	NA	NA	126	NM_001310442	108664	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	0.100000	0.691542	
mm_162973.1	chr11	14703391	14703591	+	1	NA	NA	NA	104251	NM_001164166	432536	Mm.33646	NM_001164166	ENSMUSG00000084135	Pom121l12	1700054H16Rik	POM121 membrane glycoprotein-like 12	protein-coding	0.015000	0.462687	
mm_6580.1	chr1	75219154	75219354	-	1	NA	NA	NA	40	NM_001313723	22145	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	0.080000	0.621891	-32(GCCTATAAGAGC,-,0.00)
mm_64547.1	chr7	144321310	144321510	+	1	NA	NA	NA	37025	NM_001081370	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.005000	0.383085	22(ACTTATATACAC,+,0.00)
mm_51943.1	chr6	91721629	91721829	+	1	NA	NA	NA	37662	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.030000	0.562189	
mm_49801.1	chr6	35996923	35997123	+	1	NA	NA	NA	-391061	NM_203491	243764	Mm.448632	NM_203491	ENSMUSG00000045613	Chrm2	AChR-M2|Chrm-2|M2	cholinergic receptor, muscarinic 2, cardiac	protein-coding	0.000000	0.507463	
mm_83406.1	chr9	44799117	44799317	-	1	NA	NA	NA	-1	NM_027865	71687	Mm.41409	NM_027865	ENSMUSG00000002032	Tmem25	0610039J01Rik|AI429491	transmembrane protein 25	protein-coding	0.075000	0.681592	
mm_159936.1	chr6	72306411	72306611	+	1	NA	NA	NA	1901	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.005000	0.502488	
mm_118236.1	chr13	111509254	111509454	-	1	NA	NA	NA	-19313	NM_001122963	73274	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.015000	0.497512	
mm_88393.1	chr10	76531547	76531747	+	1	NA	NA	NA	42	NM_146006	16987	Mm.55075	NM_146006	ENSMUSG00000033105	Lss	2810025N20Rik|D10Ertd116e|Osc	lanosterol synthase	protein-coding	0.095000	0.681592	
mm_70948.1	chr8	26846956	26847156	+	1	NA	NA	NA	-22633	NR_045904	72316	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.030000	0.467662	
mm_71018.1	chr8	33385760	33385960	+	1	NA	NA	NA	-333	NM_011721	22427	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome homolog (human)	protein-coding	0.150000	0.820896	
mm_60082.1	chr7	34168542	34168742	+	1	NA	NA	NA	-113	NM_016682	50995	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	0.060000	0.631841	
mm_108312.1	chr12	79558948	79559148	+	1	NA	NA	NA	261697	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.015000	0.507463	
mm_5394.1	chr1	33621320	33621520	-	1	NA	NA	NA	48374	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	0.005000	0.427861	
mm_117158.1	chr13	61570023	61570223	-	1	NA	NA	NA	4	NM_026906	117066	Mm.485905	NM_026906	ENSMUSG00000074870	Cts3	1600000I23Rik	cathepsin 3	protein-coding	0.000000	0.472637	-34(GGCTTTATAAAG,-,0.00),-32(CTTTATAAAGAG,+,0.00)
mm_34541.1	chr4	149518102	149518302	+	1	NA	NA	NA	-39	NM_023465	67087	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0.140000	0.796020	
mm_79350.1	chr9	53771417	53771617	+	1	NA	NA	NA	-18	NM_028060	72022	Mm.26159	NM_028060	ENSMUSG00000042195	Slc35f2	1500009K05Rik|AU019213	solute carrier family 35, member F2	protein-coding	0.020000	0.497512	
mm_54542.1	chr6	36743312	36743512	-	1	NA	NA	NA	67949	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.035000	0.547264	
mm_147782.1	chr18	61623977	61624177	-	1	NA	NA	NA	-15576	NR_045420	545261	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0.010000	0.517413	
mm_155706.1	chrX	95711599	95711799	+	1	NA	NA	NA	21	NM_001034907	547176	Mm.302708	NM_001034907	ENSMUSG00000035045	Zc3h12b	A130028J20Rik|CXorf32|Gm373	zinc finger CCCH-type containing 12B	protein-coding	0.100000	0.686567	
mm_49942.1	chr6	39871415	39871615	+	1	NA	NA	NA	-60579	NM_001010930	14548	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.090000	0.646766	
mm_148777.1	chr19	6108353	6108553	+	1	NA	NA	NA	2655	NM_001009546	381204	Mm.359041	NM_001009546	ENSMUSG00000054999	Naaladl1	Gm964|Naaladasel	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding	0.015000	0.467662	4(GGCCATTAATGC,-,0.00)
mm_128090.1	chr15	27788153	27788353	-	1	NA	NA	NA	-106711	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.055000	0.597015	
mm_7878.1	chr1	133019315	133019515	-	1	NA	NA	NA	6001	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	0.000000	0.398010	
mm_4484.1	chr1	173630765	173630965	+	1	NA	NA	NA	6	NM_175026	236312	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	0.010000	0.427861	
mm_40016.1	chr5	33112010	33112210	+	1	NA	NA	NA	7891	NM_019810	20537	Mm.25237	NM_019810	ENSMUSG00000011034	Slc5a1	Sglt1	solute carrier family 5 (sodium/glucose cotransporter), member 1	protein-coding	0.005000	0.358209	
mm_38731.1	chr4	145240684	145240884	-	1	NA	NA	NA	6086	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.000000	0.532338	
mm_93707.1	chr10	118633397	118633597	-	1	NA	NA	NA	-76972	NR_104123	103214	Mm.30529	NR_104123		Tmevpg1	AI447422	Theiler's murine encephalomyelitis virus persistence candidate gene 1	ncRNA	0.015000	0.417910	
mm_76259.1	chr8	83748078	83748278	-	1	NA	NA	NA	-6867	NM_001163031	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.040000	0.542289	-34(GACTATAAATAC,-,0.00)
mm_89595.1	chr10	95943341	95943541	+	1	NA	NA	NA	2778	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.005000	0.333333	
mm_102836.1	chr11	69323651	69323851	-	1	NA	NA	NA	122	NM_172560	216846	Mm.28774	NM_172560	ENSMUSG00000032782	Cntrob	9830165K03Rik|Lip8|Nip2	centrobin, centrosomal BRCA2 interacting protein	protein-coding	0.060000	0.606965	
mm_127078.1	chr15	97424464	97424664	+	1	NA	NA	NA	-177277	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.025000	0.497512	
mm_124357.1	chr14	105138279	105138479	-	1	NA	NA	NA	-23703	NR_040628	100502987	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0.010000	0.308458	
mm_123593.1	chr14	67708442	67708642	-	1	NA	NA	NA	7068	NM_001110162	108912	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	0.000000	0.328358	
mm_85419.1	chr9	103480210	103480410	-	1	NA	NA	NA	18	NM_001002896	107993	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding	0.015000	0.587065	
mm_153402.1	chr19	40508953	40509153	-	1	NA	NA	NA	4683	NM_178362	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.010000	0.517413	
mm_136546.1	chr16	97962509	97962709	-	1	NA	NA	NA	13	NM_001081685	114565	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0.095000	0.666667	
mm_78298.1	chr9	22421864	22422064	+	1	NA	NA	NA	10387	NM_026739	68283	Mm.280669	NM_026739	ENSMUSG00000036411	9530077C05Rik	1110003N12Rik|Kiaa0895|mKIAA0895	RIKEN cDNA 9530077C05 gene	protein-coding	0.005000	0.328358	-81(TCTTTTAGACAC,+,0.00)
mm_149639.1	chr19	17394933	17395133	+	1	NA	NA	NA	990	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.020000	0.412935	
mm_20683.1	chr2	132578041	132578241	-	1	NA	NA	NA	107	NM_001291050	74182	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	0.120000	0.746269	
mm_30816.1	chr4	21767078	21767278	+	1	NA	NA	NA	33	NM_029840	77032	Mm.87238	NM_029840	ENSMUSG00000028251	Tstd3	2610029I01Rik	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding	0.035000	0.606965	
mm_119459.1	chr14	47068873	47069073	+	1	NA	NA	NA	-4	NM_001310544	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.030000	0.507463	
mm_74733.1	chr8	18741251	18741451	-	1	NA	NA	NA	211	NM_007426	11601	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	0.020000	0.507463	
mm_87975.1	chr10	63528286	63528486	+	1	NA	NA	NA	70875	NM_001164376	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.000000	0.412935	81(CCACTTATGGGC,+,0.00)
mm_167782.1	chr9	119119563	119119763	+	1	NA	NA	NA	17185	NM_177117	320256	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	0.045000	0.577114	
mm_36785.1	chr4	103012059	103012259	-	1	NA	NA	NA	-194	NR_028391	100473	Mm.393171	NR_028391	ENSMUSG00000085041	BB031773	-	expressed sequence BB031773	ncRNA	0.020000	0.427861	
mm_30611.1	chr4	6702042	6702242	+	1	NA	NA	NA	-247871	NM_010945	18201	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.010000	0.482587	
mm_37792.1	chr4	130519739	130519939	-	1	NA	NA	NA	54197	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.025000	0.477612	
mm_33290.1	chr4	128884006	128884206	+	1	NA	NA	NA	-34	NM_178110	67525	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0.155000	0.800995	
mm_22269.1	chr2	178416534	178416734	-	1	NA	NA	NA	2100	NM_001081289	71532	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	0.040000	0.502488	
mm_56738.1	chr6	115762233	115762433	-	1	NA	NA	NA	133	NM_001168256	94346	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0.025000	0.542289	
mm_56755.1	chr6	116073035	116073235	-	1	NA	NA	NA	-78130	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.005000	0.492537	
mm_93388.1	chr10	107123529	107123729	-	1	NA	NA	NA	35	NM_001142804	380660	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding	0.040000	0.587065	
mm_89534.1	chr10	94514857	94515057	+	1	NA	NA	NA	100	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.145000	0.771144	
mm_108304.1	chr12	79327145	79327345	+	1	NA	NA	NA	29894	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.015000	0.373134	
mm_96768.1	chr11	69921901	69922101	+	1	NA	NA	NA	-43	NM_001166593	276770	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.040000	0.452736	
mm_9084.1	chr1	168431846	168432046	-	1	NA	NA	NA	223	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.030000	0.562189	
mm_66723.1	chr7	46115890	46116090	-	1	NA	NA	NA	-15226	NM_001204411	16514	Mm.333863	NM_010602	ENSMUSG00000096146	Kcnj11	Kir6.2|mBIR	potassium inwardly rectifying channel, subfamily J, member 11	protein-coding	0.015000	0.462687	
mm_11247.1	chr2	29890426	29890626	+	1	NA	NA	NA	463	NM_013615	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.050000	0.641791	
mm_95746.1	chr11	54860921	54861121	+	1	NA	NA	NA	-430	NM_029327	75530	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	0.030000	0.452736	
mm_25939.1	chr3	131472969	131473169	+	1	NA	NA	NA	-91699	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.005000	0.422886	
mm_45949.1	chr5	90365142	90365342	-	1	NA	NA	NA	943	NM_030886	81702	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0.050000	0.577114	
mm_94422.1	chr11	5878273	5878473	+	1	NA	NA	NA	-117	NM_008894	18972	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	0.095000	0.661692	
mm_65410.1	chr7	25244908	25245108	-	1	NA	NA	NA	5750	NM_010155	13875	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.025000	0.621891	
mm_26195.1	chr3	138526076	138526276	+	1	NA	NA	NA	-15	NM_007917	13684	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.040000	0.532338	
mm_171557.1	chr4	147132029	147132229	+	1	NA	NA	NA	-43737	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.030000	0.527363	
mm_28738.1	chr3	95737569	95737769	-	1	NA	NA	NA	1900	NM_007899	13601	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	0.005000	0.597015	
mm_91853.1	chr10	59221394	59221594	-	1	NA	NA	NA	353	NM_001024911	103080	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	0.095000	0.711443	
mm_99293.1	chr11	101330745	101330945	+	1	NA	NA	NA	239	NM_009675	11754	Mm.67281	NM_009675	ENSMUSG00000019326	Aoc3	SSAO|VAP1	amine oxidase, copper containing 3	protein-coding	0.015000	0.552239	
mm_157539.1	chrX	51205527	51205727	-	1	NA	NA	NA	363	NM_001310515	171170	Mm.295324	NM_134163	ENSMUSG00000036109	Mbnl3	A530038J18Rik|AI661274|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL	muscleblind-like 3 (Drosophila)	protein-coding	0.120000	0.711443	
mm_3868.1	chr1	160989403	160989603	+	1	NA	NA	NA	10897	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.050000	0.592040	
mm_159194.1	chr2	119167623	119167823	+	1	NA	NA	NA	-65	NM_177157	320415	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	0.120000	0.706468	
mm_154609.1	chrX	7651792	7651992	+	1	NA	NA	NA	-5487	NM_001290624	54630	Mm.232232	NM_175097	ENSMUSG00000031145	Prickle3	Lmo6|Sfc16	prickle planar cell polarity protein 3	protein-coding	0.010000	0.487562	
mm_81057.1	chr9	106147875	106148075	+	1	NA	NA	NA	-6149	NR_029549	387153		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	0.025000	0.636816	
mm_85234.1	chr9	98033120	98033320	-	1	NA	NA	NA	-53	NM_022319	64085	Mm.440903	NM_022319	ENSMUSG00000032452	Clstn2	2900042C18Rik|AI448973|CSTN2|Cs2|Cst-2|mKIAA4134	calsyntenin 2	protein-coding	0.150000	0.736318	
mm_50559.1	chr6	49047794	49047994	+	1	NA	NA	NA	11376	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.020000	0.487562	
mm_128400.1	chr15	44422571	44422771	-	1	NA	NA	NA	-5440	NM_175009	223527	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	enhancer of yellow 2 homolog (Drosophila)	protein-coding	0.010000	0.263682	
mm_34669.1	chr4	150920076	150920276	+	1	NA	NA	NA	21	NM_001077508	21942	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.010000	0.547264	
mm_130120.1	chr15	89523600	89523800	-	1	NA	NA	NA	23843	NM_021423	58234	Mm.146855	NM_021423	ENSMUSG00000022623	Shank3	AI841104|SHANK3c-3|SHANK3c-4|Shank3b	SH3/ankyrin domain gene 3	protein-coding	0.165000	0.820896	
mm_102278.1	chr11	55395462	55395662	-	1	NA	NA	NA	24518	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.015000	0.492537	
mm_58528.1	chr7	4149240	4149440	+	1	NA	NA	NA	532	NM_175529	243813	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.095000	0.656716	
mm_131272.1	chr16	11008379	11008579	+	1	NA	NA	NA	-419	NR_040518	100043147	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.020000	0.557214	
mm_168813.1	chr12	21778798	21778998	-	1	NA	NA	NA	-361462	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.120000	0.746269	
mm_74258.1	chr8	124892235	124892435	+	1	NA	NA	NA	5370	NM_198103	102058	Mm.347360	NM_198103	ENSMUSG00000074030	Exoc8	AI414418|EXO84|Exo84p|R74783|SEC84	exocyst complex component 8	protein-coding	0.000000	0.402985	
mm_164685.1	chr17	47580625	47580825	+	1	NA	NA	NA	-12742	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.412935	
mm_121496.1	chr14	121878646	121878846	+	1	NA	NA	NA	140	NM_026861	68889	Mm.441151	NM_026861	ENSMUSG00000041765	Ubac2	1190008A14Rik|AW554959|Phgdhl1	ubiquitin associated domain containing 2	protein-coding	0.095000	0.716418	
mm_165426.1	chr2	152518140	152518340	+	1	NA	NA	NA	-15	NM_001037502	545475	Mm.389378	NM_001037502	ENSMUSG00000074679	Defb28	Gm1635|OTTMUSG00000015852	defensin beta 28	protein-coding	0.015000	0.507463	
mm_105266.1	chr11	102361351	102361551	-	1	NA	NA	NA	3830	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.020000	0.552239	
mm_86717.1	chr10	19009567	19009767	+	1	NA	NA	NA	2296	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.025000	0.532338	
mm_52648.1	chr6	117179558	117179758	+	1	NA	NA	NA	11123	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.020000	0.492537	
mm_13146.1	chr2	92189696	92189896	+	1	NA	NA	NA	-2181	NR_035480	100316756		NR_035480	ENSMUSG00000088639	Mir1955	mir-1955|mmu-mir-1955	microRNA 1955	ncRNA	0.005000	0.378109	
mm_96448.1	chr11	67532362	67532562	+	1	NA	NA	NA	-536	NM_008088	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.000000	0.587065	
mm_78905.1	chr9	44772878	44773078	+	1	NA	NA	NA	-31	NM_023831	76568	Mm.278597	NM_023831	ENSMUSG00000002031	Ift46	1500035H01Rik|AA408110|AI663846|R75047|c11orf2	intraflagellar transport 46	protein-coding	0.105000	0.626866	
mm_82126.1	chr9	123509174	123509374	+	1	NA	NA	NA	-20608	NM_030692	83493	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.005000	0.422886	
mm_47318.1	chr5	122460030	122460230	-	1	NA	NA	NA	37686	NM_019805	56317	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0.010000	0.512438	
mm_110899.1	chr12	75631276	75631476	-	1	NA	NA	NA	373	NR_038063	665931	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo	0.080000	0.522388	
mm_41582.1	chr5	93175254	93175454	+	1	NA	NA	NA	31141	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.015000	0.427861	89(CTCTCTTAATGG,-,0.00)
mm_171905.1	chr5	45658544	45658744	+	1	NA	NA	NA	11064	NR_073433	69788	Mm.381492	NR_073433	ENSMUSG00000104986	1600023N17Rik	AV119442	RIKEN cDNA 1600023N17 gene	ncRNA	0.015000	0.497512	-26(GGGTATTTAAGG,-,0.00),-24(GTATTTAAGGCC,+,0.00)
mm_90866.1	chr10	8886021	8886221	-	1	NA	NA	NA	-51	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.090000	0.666667	
mm_33533.1	chr4	130932303	130932503	+	1	NA	NA	NA	-11982	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.000000	0.447761	
mm_127473.1	chr15	101272996	101273196	+	1	NA	NA	NA	6250	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.025000	0.572139	
mm_76652.1	chr8	93191776	93191976	-	1	NA	NA	NA	5928	NM_053200	104158	Mm.292803	NM_053200	ENSMUSG00000056973	Ces1d	Ces3|TGH	carboxylesterase 1D	protein-coding	0.005000	0.417910	
mm_111661.1	chr12	103326828	103327028	-	1	NA	NA	NA	11969	NM_001195726	100504156	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	0.015000	0.482587	
mm_38965.1	chr4	150901980	150902180	-	1	NA	NA	NA	7841	NM_020569	57320	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.030000	0.527363	
mm_137638.1	chr17	28412376	28412576	+	1	NA	NA	NA	-47333	NM_021478	22157	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.005000	0.333333	
mm_34579.1	chr4	150119244	150119444	+	1	NA	NA	NA	0	NM_019741	56485	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	0.030000	0.532338	
mm_127757.1	chr15	103503155	103503355	+	1	NA	NA	NA	221	NM_008800	18574	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.105000	0.731343	
mm_88264.1	chr10	73946949	73947149	+	1	NA	NA	NA	125182	NM_001142735	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0.005000	0.437811	
mm_77557.1	chr8	123318466	123318666	-	1	NA	NA	NA	10	NM_016925	14087	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	0.085000	0.686567	
mm_3958.1	chr1	164115225	164115425	+	1	NA	NA	NA	61	NM_011347	20344	Mm.3337	NM_011347	ENSMUSG00000026580	Selp	CD62P|GMP-140|Grmp|LECAM3|PADGEM	selectin, platelet	protein-coding	0.020000	0.457711	79(CTCTTTATGGGA,+,0.00)
mm_143136.1	chr17	57218095	57218295	-	1	NA	NA	NA	-967	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.010000	0.502488	28(CTTTTTAAAAAG,+,0.00),28(CTTTTTAAAAAG,-,0.00)
mm_155900.1	chrX	101655455	101655655	+	1	NA	NA	NA	15337	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.020000	0.437811	
mm_64542.1	chr7	144264009	144264209	+	1	NA	NA	NA	-20276	NM_001081370	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.005000	0.492537	
mm_161062.1	chr12	70871401	70871601	+	1	NA	NA	NA	45987	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.010000	0.477612	-63(AGTCATAAAAGG,-,0.00)
mm_131554.1	chr16	18028582	18028782	+	1	NA	NA	NA	-24178	NM_010047	13353	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0.020000	0.547264	
mm_108747.1	chr12	88794901	88795101	+	1	NA	NA	NA	497	NM_001198587	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.020000	0.487562	-41(CCCTCTTTATGG,-,0.00),-39(CTCTTTATGGGA,+,0.00)
mm_5555.1	chr1	38664909	38665109	-	1	NA	NA	NA	-37765	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.035000	0.577114	
mm_116382.1	chr13	41079452	41079652	-	1	NA	NA	NA	154	NM_001145803	17152	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	0.100000	0.671642	
mm_18705.1	chr2	71867468	71867668	-	1	NA	NA	NA	-5656	NM_172665	228026	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.010000	0.427861	
mm_78999.1	chr9	45407024	45407224	+	1	NA	NA	NA	1047	NM_007503	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.010000	0.537313	
mm_68880.1	chr7	126447575	126447775	-	1	NA	NA	NA	15398	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.005000	0.582090	
mm_74586.1	chr8	11354212	11354412	-	1	NA	NA	NA	-41486	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.010000	0.457711	
mm_92982.1	chr10	86693917	86694117	-	1	NA	NA	NA	8490	NR_015572	66263	Mm.392261	NR_015572		1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	0.010000	0.442786	
mm_160510.1	chr9	20727867	20728067	-	1	NA	NA	NA	247	NM_173777	244723	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.155000	0.746269	
mm_100388.1	chr11	119375776	119375976	+	1	NA	NA	NA	-14596	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.005000	0.522388	
mm_12869.1	chr2	83848659	83848859	+	1	NA	NA	NA	36031	NM_175514	241520	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	0.005000	0.427861	
mm_137464.1	chr17	26624083	26624283	+	1	NA	NA	NA	-52213	NM_025272	11974	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.015000	0.537313	-34(GACTTTATAAGG,-,0.00),-32(CTTTATAAGGAG,+,0.00)
mm_144611.1	chr18	32558373	32558573	+	1	NA	NA	NA	1561	NM_001347610	71683	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	0.035000	0.487562	
mm_38724.1	chr4	145234821	145235021	-	1	NA	NA	NA	11949	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.000000	0.393035	
mm_78488.1	chr9	32699794	32699994	+	1	NA	NA	NA	3852	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.010000	0.472637	
mm_117188.1	chr13	63562976	63563176	-	1	NA	NA	NA	2659	NM_008957	19206	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes	patched 1	protein-coding	0.065000	0.616915	
mm_15752.1	chr2	164237708	164237908	+	1	NA	NA	NA	533	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.030000	0.507463	
mm_112487.1	chr13	6009519	6009719	+	1	NA	NA	NA	148130	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.005000	0.383085	-11(GTTTTTATAAGC,+,0.00),-11(GTTTTTATAAGC,-,0.00)
mm_23902.1	chr3	83031746	83031946	+	1	NA	NA	NA	5693	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.025000	0.452736	
mm_13813.1	chr2	119174458	119174658	+	1	NA	NA	NA	49	NM_001039223	623781	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	OTTMUSG00000015762	predicted gene 14137	protein-coding	0.015000	0.567164	
mm_144036.1	chr17	90088258	90088458	-	1	NA	NA	NA	10	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.025000	0.517413	
mm_54103.1	chr6	16898214	16898414	-	1	NA	NA	NA	127	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.020000	0.427861	
mm_68192.1	chr7	104369732	104369932	-	1	NA	NA	NA	-11186	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.005000	0.447761	
mm_173046.1	chrX	118584252	118584452	-	1	NA	NA	NA	-103615	NM_001142750	100039551	Mm.272850	NM_001142750	ENSMUSG00000100194	Tgif2lx2	-	TGFB-induced factor homeobox 2-like, X-linked 2	protein-coding	0.015000	0.517413	-32(CCCCTTATAAGC,-,0.00),-30(CCTTATAAGCAC,+,0.00)
mm_144061.1	chr17	90789820	90790020	-	1	NA	NA	NA	3556	NR_136930	102634634		NR_136930		Gm20491	-	enolase 1, alpha non-neuron pseudogene	pseudo	0.005000	0.313433	
mm_110774.1	chr12	70347406	70347606	-	1	NA	NA	NA	108	NM_001286386	94090	Mm.184012	NM_053167	ENSMUSG00000021071	Trim9	-	tripartite motif-containing 9	protein-coding	0.070000	0.631841	
mm_88248.1	chr10	72671281	72671481	+	1	NA	NA	NA	16535	NM_001293683	52696	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	0.000000	0.432836	
mm_9835.1	chr1	184033909	184034109	-	1	NA	NA	NA	-11	NM_028516	73363	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.075000	0.641791	
mm_71397.1	chr8	46163692	46163892	+	1	NA	NA	NA	-5764	NM_025747	66756	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430|mKIAA1430	cilia and flagella associated protein 97	protein-coding	0.145000	0.736318	
mm_63217.1	chr7	126272753	126272953	+	1	NA	NA	NA	234	NM_145587	104175	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.070000	0.636816	
mm_17861.1	chr2	34821524	34821724	-	1	NA	NA	NA	1557	NM_001164768	30050	Mm.4465	NM_013890	ENSMUSG00000035949	Fbxw2	2700071L08Rik|FBW2|Fwd2|MD6	F-box and WD-40 domain protein 2	protein-coding	0.010000	0.368159	
mm_90953.1	chr10	13192973	13193173	-	1	NA	NA	NA	64	NM_181470	353258	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	0.100000	0.701493	
mm_86508.1	chr10	7629228	7629428	+	1	NA	NA	NA	-34043	NR_030698	320642	Mm.398806	NR_030698		A630066F11Rik	-	RIKEN cDNA A630066F11 gene	ncRNA	0.020000	0.457711	
mm_73809.1	chr8	117340443	117340643	+	1	NA	NA	NA	-8627	NM_028941	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.015000	0.522388	
mm_8409.1	chr1	151947223	151947423	-	1	NA	NA	NA	142997	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik|ENSMUSG00000073540	RIKEN cDNA 1700025G04 gene	protein-coding	0.000000	0.308458	
mm_151981.1	chr19	5831237	5831437	-	1	NA	NA	NA	14141	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.015000	0.492537	
mm_28765.1	chr3	95892737	95892937	-	1	NA	NA	NA	-832	NM_153513	229600	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	0.010000	0.507463	
mm_107027.1	chr12	12993225	12993425	+	1	NA	NA	NA	-51489	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.020000	0.512438	
mm_126044.1	chr15	76904766	76904966	+	1	NA	NA	NA	795	NM_012053	26961	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0.045000	0.582090	
mm_48175.1	chr5	137299917	137300117	-	1	NA	NA	NA	-3329	NR_106003	102465627		NR_106003	ENSMUSG00000098624	Mir7036	Gm27973|mmu-mir-7036|mmu-mir-7036a	microRNA 7036	ncRNA	0.020000	0.587065	
mm_52071.1	chr6	97807806	97808006	+	1	NA	NA	NA	848	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.010000	0.537313	
mm_58048.1	chr6	136828092	136828292	-	1	NA	NA	NA	24	NM_021714	60321	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	0.075000	0.592040	
mm_151710.1	chr19	4615429	4615629	-	1	NA	NA	NA	138	NM_153388	225875	Mm.329675	NM_153388	ENSMUSG00000045045	Lrfn4	BC023156|Salm3	leucine rich repeat and fibronectin type III domain containing 4	protein-coding	0.065000	0.641791	
mm_12029.1	chr2	58163874	58164074	+	1	NA	NA	NA	0	NR_045896	100042926	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	OTTMUSG00000012675	predicted gene 13546	ncRNA	0.000000	0.542289	-59(GACCTTATAAGG,-,0.00),-57(CCTTATAAGGGT,+,0.00)
mm_101900.1	chr11	49186999	49187199	-	1	NA	NA	NA	-10	NM_172793	237754	Mm.130787	NM_172793	ENSMUSG00000040283	Btnl9	B430208I01|Btn3|D330012D11Rik	butyrophilin-like 9	protein-coding	0.010000	0.497512	44(CCCCTTTAGAGG,-,0.00),45(CCCTTTAGAGGG,+,0.00)
mm_79622.1	chr9	59288234	59288434	+	1	NA	NA	NA	-3238	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.020000	0.517413	
mm_28628.1	chr3	95139754	95139954	-	1	NA	NA	NA	-668	NR_106175	102465890		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	0.020000	0.547264	
mm_122224.1	chr14	32685179	32685379	-	1	NA	NA	NA	-7	NM_001195097	100504518	Mm.318319	NM_001195097	ENSMUSG00000071540	3425401B19Rik	-	RIKEN cDNA 3425401B19 gene	protein-coding	0.025000	0.517413	
mm_155996.1	chrX	106156763	106156963	+	1	NA	NA	NA	13588	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.005000	0.457711	
mm_42902.1	chr5	122491652	122491852	+	1	NA	NA	NA	10473	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.025000	0.432836	
mm_45727.1	chr5	86172670	86172870	-	1	NA	NA	NA	-27	NM_172712	231380	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	0.085000	0.696517	
mm_105997.1	chr11	115686086	115686286	-	1	NA	NA	NA	13348	NM_001313937	14784	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.010000	0.402985	83(CTTTTAAGAGAA,+,0.00)
mm_139162.1	chr17	47557422	47557622	+	1	NA	NA	NA	-35945	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.010000	0.482587	
mm_3219.1	chr1	135845799	135845999	+	1	NA	NA	NA	5038	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.000000	0.482587	
mm_35999.1	chr4	56432961	56433161	-	1	NA	NA	NA	308364	NM_025271	11471	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Tact1	actin-like 7b	protein-coding	0.005000	0.547264	
mm_21150.1	chr2	154407997	154408197	-	1	NA	NA	NA	-13	NM_009228	20648	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	0.115000	0.741294	
mm_73705.1	chr8	111687008	111687208	+	1	NA	NA	NA	2566	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.045000	0.621891	-92(CCTTTTCTGGGC,+,0.00)
mm_143595.1	chr17	74819833	74820033	-	1	NA	NA	NA	102183	NM_152817	74196	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0.005000	0.378109	
mm_83387.1	chr9	44603405	44603605	-	1	NA	NA	NA	-1387	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.010000	0.472637	-41(CCTTTTAAACCG,+,0.00)
mm_66791.1	chr7	47091620	47091820	-	1	NA	NA	NA	-8496	NR_106023	102465639		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.020000	0.487562	
mm_116815.1	chr13	54468734	54468934	-	1	NA	NA	NA	6	NM_028597	73666	Mm.292487	NM_028597	ENSMUSG00000025872	Thoc3	2410044K02Rik|AL033344	THO complex 3	protein-coding	0.145000	0.726368	
mm_138138.1	chr17	34198263	34198463	+	1	NA	NA	NA	168	NM_010724	16913	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	0.060000	0.631841	
mm_6776.1	chr1	84134218	84134418	-	1	NA	NA	NA	84643	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.487562	
mm_66130.1	chr7	31055282	31055482	-	1	NA	NA	NA	274	NM_052992	56188	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	0.015000	0.597015	
mm_98426.1	chr11	94645171	94645371	+	1	NA	NA	NA	8483	NM_177752	268465	Mm.358937	NM_177752	ENSMUSG00000039055	Eme1	6820428D13	essential meiotic structure-specific endonuclease 1	protein-coding	0.010000	0.492537	
mm_49025.1	chr6	4759502	4759702	+	1	NA	NA	NA	12296	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.005000	0.333333	
mm_116111.1	chr13	28950030	28950230	-	1	NA	NA	NA	3552	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.025000	0.323383	
mm_87437.1	chr10	51459832	51460032	+	1	NA	NA	NA	-20680	NM_008147	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.000000	0.393035	
mm_86071.1	chr9	114775395	114775595	-	1	NA	NA	NA	6498	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.010000	0.636816	
mm_43431.1	chr5	136083816	136084016	+	1	NA	NA	NA	0	NM_133914	54153	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.070000	0.706468	
mm_153191.1	chr19	34510690	34510890	-	1	NA	NA	NA	16684	NM_001111100	16889	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.015000	0.427861	
mm_132487.1	chr16	36916325	36916525	+	1	NA	NA	NA	-18558	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.055000	0.537313	
mm_99396.1	chr11	102163754	102163954	+	1	NA	NA	NA	-7447	NM_029649	76547	Mm.46529	NM_029649	ENSMUSG00000020921	Tmem101	2610511E22Rik	transmembrane protein 101	protein-coding	0.005000	0.378109	
mm_76286.1	chr8	84198281	84198481	-	1	NA	NA	NA	-10137	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.035000	0.631841	
mm_25726.1	chr3	122730045	122730245	+	1	NA	NA	NA	987	NM_153422	242202	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	0.105000	0.686567	
mm_63957.1	chr7	139914560	139914760	+	1	NA	NA	NA	19964	NM_177261	76484	Mm.44442	NM_177261	ENSMUSG00000066129	Kndc1	2410012C07Rik|B830014K08Rik|VKIND|very-kind	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding	0.030000	0.587065	
mm_21297.1	chr2	157025935	157026135	-	1	NA	NA	NA	-18960	NM_025853	66934	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0.005000	0.417910	
mm_11688.1	chr2	35661179	35661379	+	1	NA	NA	NA	-30715	NM_001001602	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.185000	0.855721	
mm_122414.1	chr14	41030917	41031117	-	1	NA	NA	NA	-17184	NM_001316737	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.020000	0.323383	
mm_70186.1	chr7	143780128	143780328	-	1	NA	NA	NA	4272	NM_175534	244238	Mm.183561	NM_175534	ENSMUSG00000048965	Mrgpre	C130069N09Rik|Ebrt3|Mgrf|MrgE	MAS-related GPR, member E	protein-coding	0.005000	0.497512	
mm_126697.1	chr15	85037106	85037306	+	1	NA	NA	NA	144	NM_133750	73225	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0.145000	0.771144	
mm_121929.1	chr14	23835751	23835951	-	1	NA	NA	NA	168354	NM_001253375	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.020000	0.527363	
mm_112007.1	chr12	110889032	110889232	-	1	NA	NA	NA	13	NM_027223	67236	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	0.060000	0.601990	
mm_147719.1	chr18	60822857	60823057	-	1	NA	NA	NA	10881	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.015000	0.532338	
mm_33097.1	chr4	124700278	124700478	+	1	NA	NA	NA	-321	NM_010213	14201	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	0.015000	0.507463	
mm_116135.1	chr13	28953360	28953560	-	1	NA	NA	NA	222	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.050000	0.532338	
mm_77724.1	chr8	126844811	126845011	-	1	NA	NA	NA	101010	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.015000	0.497512	
mm_116421.1	chr13	41828220	41828420	-	1	NA	NA	NA	19168	NM_175417	109254	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.030000	0.527363	
mm_127232.1	chr15	99406052	99406252	+	1	NA	NA	NA	12933	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.005000	0.477612	
mm_67140.1	chr7	73238554	73238754	-	1	NA	NA	NA	-71726	NR_105062	100505025	Mm.445959	NR_105062	ENSMUSG00000108530	LOC100505025	-	uncharacterized LOC100505025	ncRNA	0.015000	0.497512	
mm_20500.1	chr2	130423680	130423880	-	1	NA	NA	NA	508	NM_178762	319513	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	0.115000	0.641791	
mm_126072.1	chr15	77508169	77508369	+	1	NA	NA	NA	-2	NM_001177533	626615	Mm.390820	NM_001177533	ENSMUSG00000091650	Apol11a	EG626615	apolipoprotein L 11a	protein-coding	0.000000	0.472637	
mm_102612.1	chr11	62457704	62457904	-	1	NA	NA	NA	-472	NM_177229	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.065000	0.547264	
mm_93688.1	chr10	117815882	117816082	-	1	NA	NA	NA	-23277	NM_134010	103468	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.005000	0.432836	
mm_162186.1	chrX	103630557	103630757	+	1	NA	NA	NA	71	NM_029158	75064	Mm.159414	NM_029158	ENSMUSG00000031330	Zcchc13	4930513O09Rik|Cnbp2	zinc finger, CCHC domain containing 13	protein-coding	0.040000	0.601990	
mm_103097.1	chr11	69935661	69935861	-	1	NA	NA	NA	-138	NM_016875	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.135000	0.756219	
mm_88179.1	chr10	69925712	69925912	+	1	NA	NA	NA	280	NM_009670	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.025000	0.442786	-42(GCTTTTATGTCA,+,0.00)
mm_87381.1	chr10	44611907	44612107	+	1	NA	NA	NA	-153259	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.000000	0.393035	
mm_82761.1	chr9	26888986	26889186	-	1	NA	NA	NA	-28263	NM_001113323	70893	Mm.78118	NM_001113323	ENSMUSG00000031966	Glb1l3	4921509F24Rik	galactosidase, beta 1 like 3	protein-coding	0.000000	0.383085	
mm_50149.1	chr6	41543715	41543915	+	1	NA	NA	NA	22039	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.035000	0.542289	
mm_32394.1	chr4	106651004	106651204	+	1	NA	NA	NA	35	NM_001083887	230577	Mm.134029	NM_172272	ENSMUSG00000043572	Pars2	BC027073	prolyl-tRNA synthetase (mitochondrial)(putative)	protein-coding	0.080000	0.651741	
mm_123458.1	chr14	65592945	65593145	-	1	NA	NA	NA	67	NM_001253812	74195	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	0.080000	0.567164	
mm_82658.1	chr9	22084971	22085171	-	1	NA	NA	NA	356	NM_001253897	26940	Mm.425568	NM_012029	ENSMUSG00000066839	Ecsit	Sitpec	ECSIT signalling integrator	protein-coding	0.060000	0.547264	-19(CCTCTTAGAGAC,+,0.00)
mm_122776.1	chr14	54409876	54410076	-	1	NA	NA	NA	-504	NM_001253680	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.010000	0.497512	
mm_159712.1	chr5	32146592	32146792	+	1	NA	NA	NA	10220	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.010000	0.522388	
mm_132572.1	chr16	38143236	38143436	+	1	NA	NA	NA	-54076	NR_033221	414072	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.025000	0.477612	
mm_170273.1	chr18	24869707	24869907	+	1	NA	NA	NA	161184	NM_001289655	225288	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0.015000	0.567164	
mm_81101.1	chr9	106429443	106429643	+	1	NA	NA	NA	132	NM_009082	19944	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	0.110000	0.631841	
mm_116658.1	chr13	49190698	49190898	-	1	NA	NA	NA	3251	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.015000	0.542289	
mm_100244.1	chr11	117266341	117266541	+	1	NA	NA	NA	195	NM_001113487	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.110000	0.781095	
mm_97484.1	chr11	78324542	78324742	+	1	NA	NA	NA	444	NM_009657	11676	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0.020000	0.532338	
mm_164136.1	chr15	51040823	51041023	+	1	NA	NA	NA	-150882	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.005000	0.363184	
mm_49881.1	chr6	38608919	38609119	+	1	NA	NA	NA	28220	NM_001033171	74253	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0.000000	0.338308	
mm_86771.1	chr10	20010260	20010460	+	1	NA	NA	NA	75834	NM_008580	26408	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.000000	0.333333	21(TTCTATATATGG,-,0.00)
mm_31733.1	chr4	63086871	63087071	+	1	NA	NA	NA	67201	NM_007443	11699	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.015000	0.537313	
mm_62003.1	chr7	91250658	91250858	+	1	NA	NA	NA	159972	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.388060	21(CCTTTTAGATTG,+,0.00)
mm_26360.1	chr3	142549381	142549581	+	1	NA	NA	NA	-10571	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.000000	0.268657	
mm_19997.1	chr2	118728435	118728635	-	1	NA	NA	NA	-97	NM_001290790	18796	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	0.020000	0.626866	63(GGCTATAAGAGC,-,0.00)
mm_32692.1	chr4	115884271	115884471	+	1	NA	NA	NA	-29	NM_001039124	654462	Mm.388913	NM_001039124	ENSMUSG00000073774	Kncn	Kino|L5	kinocilin	protein-coding	0.015000	0.562189	-67(ACTTTAATAGGC,+,0.00)
mm_9097.1	chr1	169531290	169531490	-	1	NA	NA	NA	74	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0.100000	0.592040	
mm_172184.1	chr6	4923999	4924199	-	1	NA	NA	NA	20779	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.000000	0.507463	
mm_156728.1	chrX	159913894	159914094	+	1	NA	NA	NA	-28699	NM_001290661	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.020000	0.412935	
mm_103519.1	chr11	76808942	76809142	-	1	NA	NA	NA	37966	NM_007754	12874	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0.000000	0.398010	
mm_45741.1	chr5	86518494	86518694	-	1	NA	NA	NA	6	NM_177162	320454	Mm.184522	NM_177162	ENSMUSG00000079451	Tmprss11g	9930032O22Rik|Desc4	transmembrane protease, serine 11g	protein-coding	0.030000	0.442786	
mm_73776.1	chr8	116873612	116873812	+	1	NA	NA	NA	47724	NM_026844	66531	Mm.4011	NM_026844	ENSMUSG00000014633	Cmc2	1110046L09Rik|2310061C15Rik|DC13	COX assembly mitochondrial protein 2	protein-coding	0.025000	0.552239	
mm_12193.1	chr2	65620840	65621040	+	1	NA	NA	NA	171	NM_001346679	110876	Mm.220329	NM_001099298	ENSMUSG00000075318	Scn2a	6430408L10|A230052E19Rik|Nav1.2|Scn2a1	sodium channel, voltage-gated, type II, alpha	protein-coding	0.020000	0.398010	
mm_112698.1	chr13	17695346	17695546	+	1	NA	NA	NA	33	NM_025479	66308	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	0.085000	0.582090	-59(GTGTATAAATAG,-,0.00)
mm_7708.1	chr1	130449173	130449373	-	1	NA	NA	NA	13471	NM_010016	13136	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0.000000	0.442786	
mm_159930.1	chr6	66896905	66897105	+	1	NA	NA	NA	114	NM_001177558	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.050000	0.482587	60(GGGTTTAAAAAA,-,0.00)
mm_46357.1	chr5	103210988	103211188	-	1	NA	NA	NA	246	NM_001081567	26414	Mm.39253	NM_009158	ENSMUSG00000046709	Mapk10	C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding	0.005000	0.373134	
mm_47320.1	chr5	122460846	122461046	-	1	NA	NA	NA	38502	NM_019805	56317	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0.030000	0.557214	
mm_74584.1	chr8	11312645	11312845	-	1	NA	NA	NA	-60	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.110000	0.731343	
mm_21715.1	chr2	164608750	164608950	-	1	NA	NA	NA	4536	NM_001276432	277343	Mm.383292	NM_001080550	ENSMUSG00000070533	Wfdc8	Gm706	WAP four-disulfide core domain 8	protein-coding	0.025000	0.597015	
mm_164200.1	chr15	79768257	79768457	+	1	NA	NA	NA	6110	NM_017470	54152	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	0.010000	0.517413	-70(CCTTTTAGAGTG,+,0.00)
mm_19944.1	chr2	116397253	116397453	-	1	NA	NA	NA	-321257	NR_033447	69974	Mm.440293	NR_033447		2810405F15Rik	-	RIKEN cDNA 2810405F15 gene	ncRNA	0.005000	0.462687	30(CCTTATAGACAC,+,0.00)
mm_48648.1	chr5	145854988	145855188	-	1	NA	NA	NA	24766	NM_007818	13112	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	0.010000	0.417910	
mm_65940.1	chr7	30394437	30394637	-	1	NA	NA	NA	-19251	NM_011662	22177	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0.030000	0.502488	
mm_49832.1	chr6	37870810	37871010	+	1	NA	NA	NA	99	NM_145076	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.155000	0.736318	
mm_50047.1	chr6	41151619	41151819	+	1	NA	NA	NA	-116210	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.522388	
mm_159709.1	chr5	31048462	31048662	-	1	NA	NA	NA	0	NM_001177621	330064	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	0.110000	0.666667	
mm_41253.1	chr5	88793844	88794044	+	1	NA	NA	NA	28931	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.015000	0.457711	
mm_139332.1	chr17	49292645	49292845	+	1	NA	NA	NA	20215	NR_033486	100415784	Mm.400421	NR_033486		Gm17830	-	predicted gene, 17830	ncRNA	0.010000	0.467662	
mm_78126.1	chr9	20651997	20652197	+	1	NA	NA	NA	-33	NM_023371	23988	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	0.105000	0.641791	
mm_39853.1	chr5	30913640	30913840	+	1	NA	NA	NA	-46	NM_133918	100952	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	0.025000	0.621891	
mm_161116.1	chr12	105191188	105191388	+	1	NA	NA	NA	243	NM_013772	27378	Mm.485527	NM_013772	ENSMUSG00000068940	Tcl1b3	-	T cell leukemia/lymphoma 1B, 3	protein-coding	0.005000	0.472637	
mm_94602.1	chr11	12314419	12314619	+	1	NA	NA	NA	97621	NM_001282994	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.010000	0.477612	
mm_75994.1	chr8	72434950	72435150	-	1	NA	NA	NA	106	NM_029782	73316	Mm.196315	NM_028500	ENSMUSG00000019732	Calr3	1700031L01Rik|6330586I20Rik|Crt2|cspn	calreticulin 3	protein-coding	0.005000	0.477612	
mm_58905.1	chr7	17163859	17164059	+	1	NA	NA	NA	13559	NM_054059	384557	Mm.486145	NM_054059	ENSMUSG00000053228	Ceacam3	EG384557|Psg24|cea12	carcinoembryonic antigen-related cell adhesion molecule 3	protein-coding	0.000000	0.427861	5(GCATATATAGGA,+,0.00)
mm_90815.1	chr10	7906880	7907080	-	1	NA	NA	NA	49143	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.010000	0.472637	
mm_76194.1	chr8	82403058	82403258	-	1	NA	NA	NA	-572	NM_008357	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.015000	0.552239	
mm_109717.1	chr12	116047939	116048139	+	1	NA	NA	NA	315	NM_019565	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0.060000	0.641791	
mm_57.1	chr1	6539697	6539897	+	1	NA	NA	NA	52566	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.333333	
mm_104074.1	chr11	86586580	86586780	-	1	NA	NA	NA	-2522	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.393035	
mm_25798.1	chr3	127633105	127633305	+	1	NA	NA	NA	60	NM_009718	11924	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	0.080000	0.597015	
mm_1543.1	chr1	72852082	72852282	+	1	NA	NA	NA	22683	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.035000	0.562189	
mm_48108.1	chr5	137108992	137109192	-	1	NA	NA	NA	7115	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.015000	0.537313	
mm_42516.1	chr5	115544260	115544460	+	1	NA	NA	NA	-15107	NM_007475	11837	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.015000	0.567164	
mm_148940.1	chr19	7056695	7056895	+	1	NA	NA	NA	27	NM_134147	107227	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0.125000	0.686567	
mm_140962.1	chr17	24644924	24645124	-	1	NA	NA	NA	-67	NM_023449	65962	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0.015000	0.597015	
mm_148354.1	chr18	84720612	84720812	-	1	NA	NA	NA	470	NM_173770	240479	Mm.472378	NM_173770	ENSMUSG00000047992	Fam69c	B230399E16Rik	family with sequence similarity 69, member C	protein-coding	0.030000	0.512438	
mm_14588.1	chr2	136052090	136052290	+	1	NA	NA	NA	-5737	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.010000	0.472637	
mm_14719.1	chr2	143936155	143936355	+	1	NA	NA	NA	20924	NM_019771	56431	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.000000	0.303483	
mm_100655.1	chr11	3173224	3173424	-	1	NA	NA	NA	20139	NM_030207	78887	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.010000	0.383085	
mm_78280.1	chr9	22101098	22101298	+	1	NA	NA	NA	1945	NM_009922	12797	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	0.035000	0.582090	
mm_121543.1	chr14	122474380	122474580	+	1	NA	NA	NA	719	NR_045046	69248	Mm.235369	NR_045046	ENSMUSG00000085555	2610035F20Rik	-	RIKEN cDNA 2610035F20 gene	ncRNA	0.065000	0.567164	
mm_55260.1	chr6	53592224	53592424	-	1	NA	NA	NA	18950	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.015000	0.447761	
mm_139460.1	chr17	55952730	55952930	+	1	NA	NA	NA	207	NM_015766	50498	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	0.010000	0.587065	
mm_173274.1	chrX	98583549	98583749	+	1	NA	NA	NA	307376	NM_052976	94190	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	0.060000	0.567164	
mm_127307.1	chr15	100227812	100228012	+	1	NA	NA	NA	53	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.145000	0.781095	
mm_5991.1	chr1	58581876	58582076	-	1	NA	NA	NA	4178	NM_001310599	213056	Mm.26272	NM_172513	ENSMUSG00000038174	Fam126b	C130065N10Rik|D1Ertd53e|D630010C10	family with sequence similarity 126, member B	protein-coding	0.000000	0.348259	
mm_66510.1	chr7	45102569	45102769	-	1	NA	NA	NA	1153	NM_010189	14132	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0.035000	0.572139	
mm_157927.1	chrX	79643504	79643704	-	1	NA	NA	NA	-8022	NM_001113734	71967	Mm.379207	NM_028025	ENSMUSG00000046942	Mageb16	2410003J06Rik	melanoma antigen family B, 16	protein-coding	0.005000	0.363184	
mm_67828.1	chr7	98321094	98321294	-	1	NA	NA	NA	-11667	NM_025408	66190	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca	alkaline ceramidase 3	protein-coding	0.000000	0.407960	
mm_149764.1	chr19	22913529	22913729	+	1	NA	NA	NA	163024	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.005000	0.338308	
mm_21107.1	chr2	153345994	153346194	-	1	NA	NA	NA	-45	NM_001039939	228790	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0.150000	0.771144	
mm_10859.1	chr2	25054413	25054613	+	1	NA	NA	NA	134	NM_001177655	56876	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.130000	0.746269	
mm_157119.1	chrX	9444360	9444560	-	1	NA	NA	NA	24864	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.402985	
mm_107075.1	chr12	16958596	16958796	+	1	NA	NA	NA	41422	NM_172574	217430	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	0.005000	0.393035	
mm_167961.1	chrX	143684996	143685196	+	1	NA	NA	NA	-8191	NM_001195047	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding	0.020000	0.462687	
mm_83272.1	chr9	43051256	43051456	-	1	NA	NA	NA	54362	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0.005000	0.328358	
mm_117928.1	chr13	99434188	99434388	-	1	NA	NA	NA	-21462	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.020000	0.457711	
mm_60189.1	chr7	43351337	43351537	+	1	NA	NA	NA	96	NM_145581	233186	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0.005000	0.507463	
mm_18078.1	chr2	42653223	42653423	-	1	NA	NA	NA	275	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding	0.020000	0.522388	
mm_100011.1	chr11	114872286	114872486	+	1	NA	NA	NA	-17655	NM_001347654	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.000000	0.398010	
mm_80185.1	chr9	72352268	72352468	+	1	NA	NA	NA	77480	NM_001311105	235469	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	0.020000	0.417910	-43(TTTTTTAAACAC,+,0.00)
mm_10240.1	chr2	8796953	8797153	+	1	NA	NA	NA	-392462	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.000000	0.373134	
mm_81422.1	chr9	109056230	109056430	+	1	NA	NA	NA	1464	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.015000	0.562189	
mm_136237.1	chr16	90749563	90749763	-	1	NA	NA	NA	11339	NM_029844	77037	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.015000	0.467662	84(GGCCCTAAAAAA,-,0.00)
mm_158460.1	chrX	140599411	140599611	-	1	NA	NA	NA	1011	NM_001077364	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.135000	0.761194	
mm_53652.1	chr6	141249068	141249268	+	1	NA	NA	NA	-101	NM_018779	54611	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0.025000	0.597015	
mm_137243.1	chr17	24473809	24474009	+	1	NA	NA	NA	25	NM_175682	319259	Mm.258355	NM_175682	ENSMUSG00000045744	Bricd5	9930021D14Rik	BRICHOS domain containing 5	protein-coding	0.005000	0.562189	
mm_77370.1	chr8	119822614	119822814	-	1	NA	NA	NA	17865	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.070000	0.592040	
mm_26313.1	chr3	142519324	142519524	+	1	NA	NA	NA	-10912	NM_001083312	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.005000	0.432836	
mm_125224.1	chr15	34123584	34123784	+	1	NA	NA	NA	40965	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.015000	0.343284	89(CCTTTTAAATTT,+,0.00)
mm_10504.1	chr2	16355547	16355747	+	1	NA	NA	NA	-657	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.020000	0.537313	-76(CCCTTTAAACCC,+,0.00)
mm_41124.1	chr5	87785182	87785382	+	1	NA	NA	NA	10832	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.005000	0.273632	
mm_77221.1	chr8	115695866	115696066	-	1	NA	NA	NA	10928	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.000000	0.273632	
mm_69263.1	chr7	127894550	127894750	-	1	NA	NA	NA	967	NM_178600	27973	Mm.29703	NM_178600	ENSMUSG00000096145	Vkorc1	D7Wsu86e	vitamin K epoxide reductase complex, subunit 1	protein-coding	0.015000	0.542289	
mm_84691.1	chr9	72393775	72393975	-	1	NA	NA	NA	-44654	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.015000	0.383085	
mm_155730.1	chrX	96163673	96163873	+	1	NA	NA	NA	67728	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.025000	0.537313	
mm_142599.1	chr17	46763634	46763834	-	1	NA	NA	NA	-22	NM_011195	19208	Mm.215173	NM_011195	ENSMUSG00000036858	Ptcra	gp33|pT-alpha|pT-alpha-TCR|pT[a]|pTa|pTalpha	pre T cell antigen receptor alpha	protein-coding	0.000000	0.626866	
mm_75972.1	chr8	72009527	72009727	-	1	NA	NA	NA	-1	NM_024444	72054	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	0.000000	0.601990	
mm_27698.1	chr3	66981168	66981368	-	1	NA	NA	NA	-127	NM_001302359	20429	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0.105000	0.756219	
mm_166242.1	chr5	74029116	74029316	-	1	NA	NA	NA	39195	NM_177561	69727	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.045000	0.467662	
mm_64298.1	chr7	141861471	141861671	+	1	NA	NA	NA	22499	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.020000	0.477612	
mm_80889.1	chr9	99451345	99451545	+	1	NA	NA	NA	-4798	NM_001165957	623534	Mm.484967	NM_001165957		Nme9	Txndc6	NME/NM23 family member 9	protein-coding	0.045000	0.552239	
mm_18589.1	chr2	66441056	66441256	-	1	NA	NA	NA	276	NR_033495	100038743	Mm.330264	NR_033495		Gm13629	OTTMUSG00000013098	predicted gene 13629	ncRNA	0.010000	0.517413	
mm_62520.1	chr7	102230037	102230237	+	1	NA	NA	NA	7109	NR_111937	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.030000	0.626866	
mm_94530.1	chr11	9117981	9118181	+	1	NA	NA	NA	-22	NM_009477	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.030000	0.497512	
mm_42575.1	chr5	117240782	117240982	+	1	NA	NA	NA	46682	NM_018858	23980	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	0.055000	0.542289	
mm_125815.1	chr15	74932200	74932400	+	1	NA	NA	NA	-22751	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.030000	0.517413	
mm_4419.1	chr1	172500154	172500354	+	1	NA	NA	NA	8	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.085000	0.676617	-72(GCCTTTAAACCC,+,0.00)
mm_7339.1	chr1	105880766	105880966	-	1	NA	NA	NA	100143	NM_009399	21934	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.025000	0.532338	
mm_64673.1	chr7	4500705	4500905	-	1	NA	NA	NA	875	NM_029834	232807	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.020000	0.422886	-56(TCCTTGAAAAGG,-,0.00),82(CCTCTTATAGAA,+,0.00)
mm_76327.1	chr8	84705721	84705921	-	1	NA	NA	NA	4364	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.095000	0.736318	
mm_16241.1	chr2	173156344	173156544	+	1	NA	NA	NA	3371	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.005000	0.482587	
mm_108140.1	chr12	76255124	76255324	+	1	NA	NA	NA	-8	NM_138745	108156	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0.060000	0.641791	
mm_27271.1	chr3	40509660	40509860	-	1	NA	NA	NA	13152	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.050000	0.462687	
mm_97002.1	chr11	70844843	70845043	+	1	NA	NA	NA	182	NM_001291142	54189	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0.135000	0.786070	
mm_163128.1	chr11	78149373	78149573	-	1	NA	NA	NA	16077	NM_009423	22032	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0.050000	0.502488	
mm_129824.1	chr15	83122640	83122840	-	1	NA	NA	NA	61	NM_029101	74778	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.100000	0.676617	
mm_10471.1	chr2	14331340	14331540	+	1	NA	NA	NA	-56958	NM_001012305	277468	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0.010000	0.407960	
mm_72101.1	chr8	71592470	71592670	+	1	NA	NA	NA	386	NM_001294269	66171	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	0.145000	0.726368	
mm_113511.1	chr13	37778318	37778518	+	1	NA	NA	NA	-47620	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.090000	0.696517	
mm_163229.1	chr11	102916087	102916287	-	1	NA	NA	NA	8937	NM_197959	70218	Mm.32084	NM_197959	ENSMUSG00000051378	Kif18b	3000004C01Rik	kinesin family member 18B	protein-coding	0.010000	0.527363	
mm_90237.1	chr10	121395089	121395289	+	1	NA	NA	NA	30099	NM_029364	75612	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.050000	0.552239	
mm_55681.1	chr6	72610496	72610696	-	1	NA	NA	NA	6152	NM_009444	22135	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	0.005000	0.447761	
mm_16314.1	chr2	174304011	174304211	+	1	NA	NA	NA	6252	NM_001310085	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.010000	0.442786	
mm_110436.1	chr12	47833986	47834186	-	1	NA	NA	NA	467376	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0.010000	0.358209	
mm_68627.1	chr7	118128567	118128767	-	1	NA	NA	NA	958	NM_019419	54208	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0.015000	0.398010	11(CCCCAGAAAAGG,-,0.00)
mm_17226.1	chr2	25546794	25546994	-	1	NA	NA	NA	46	NM_001290413	22030	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	0.145000	0.731343	
mm_117252.1	chr13	64366452	64366652	-	1	NA	NA	NA	3968	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.035000	0.497512	
mm_164074.1	chr14	120636924	120637124	+	1	NA	NA	NA	158563	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.005000	0.447761	
mm_169534.1	chr14	92603435	92603635	-	1	NA	NA	NA	1285353	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.050000	0.557214	-10(CTCTCTATGAGG,-,0.00)
mm_166394.1	chr5	135012632	135012832	-	1	NA	NA	NA	425	NR_026688	69812	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0.015000	0.611940	
mm_166425.1	chr5	137152115	137152315	+	1	NA	NA	NA	-36008	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.492537	
mm_37122.1	chr4	116651580	116651780	-	1	NA	NA	NA	-6	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.060000	0.597015	
mm_10722.1	chr2	22834222	22834422	+	1	NA	NA	NA	59995	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.015000	0.447761	
mm_127839.1	chr15	6874173	6874373	-	1	NA	NA	NA	40	NM_011019	18414	Mm.10760	NM_011019	ENSMUSG00000022146	Osmr	OSMRB	oncostatin M receptor	protein-coding	0.115000	0.726368	
mm_14383.1	chr2	129631174	129631374	+	1	NA	NA	NA	38105	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.005000	0.552239	
mm_153350.1	chr19	39886581	39886781	-	1	NA	NA	NA	88	NM_001104525	100043108	Mm.482331	NM_001104525	ENSMUSG00000092008	Cyp2c69	AI098658	cytochrome P450, family 2, subfamily c, polypeptide 69	protein-coding	0.010000	0.442786	
mm_153946.1	chr19	47545736	47545936	-	1	NA	NA	NA	-8816	NM_175360	108689	Mm.218048	NM_175360	ENSMUSG00000042694	Obfc1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|RPA-32	oligonucleotide/oligosaccharide-binding fold containing 1	protein-coding	0.000000	0.517413	
mm_148930.1	chr19	7017867	7018067	+	1	NA	NA	NA	1502	NM_153795	108101	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.010000	0.542289	
mm_162666.1	chr10	6986442	6986642	+	1	NA	NA	NA	-6077	NM_001170801	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.015000	0.472637	
mm_170272.1	chr18	24576731	24576931	-	1	NA	NA	NA	26986	NM_139143	106957	Mm.21688	NM_139143	ENSMUSG00000024270	Slc39a6	Ermelin	solute carrier family 39 (metal ion transporter), member 6	protein-coding	0.045000	0.562189	
mm_61876.1	chr7	89509969	89510169	+	1	NA	NA	NA	7517	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.030000	0.522388	
mm_36517.1	chr4	84518467	84518667	-	1	NA	NA	NA	156519	NM_172870	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.000000	0.303483	
mm_88216.1	chr10	70245189	70245389	+	1	NA	NA	NA	13	NM_025807	66859	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.110000	0.746269	
mm_89717.1	chr10	98880296	98880496	+	1	NA	NA	NA	-34756	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.015000	0.492537	
mm_47710.1	chr5	129995399	129995599	-	1	NA	NA	NA	7329	NM_010368	110006	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.035000	0.592040	
mm_104274.1	chr11	89302456	89302656	-	1	NA	NA	NA	3	NM_008711	18121	Mm.135266	NM_008711	ENSMUSG00000048616	Nog	-	noggin	protein-coding	0.100000	0.666667	
mm_92124.1	chr10	64037818	64038018	-	1	NA	NA	NA	52337	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.025000	0.457711	
mm_116138.1	chr13	29357585	29357785	-	1	NA	NA	NA	341430	NR_045075	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0.010000	0.368159	
mm_65711.1	chr7	28378093	28378293	-	1	NA	NA	NA	1035	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.060000	0.582090	
mm_9629.1	chr1	176813852	176814052	-	1	NA	NA	NA	-708	NM_029756	76816	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	0.135000	0.721393	
mm_124046.1	chr14	77252228	77252428	-	1	NA	NA	NA	95565	NM_172813	239188	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	0.035000	0.447761	
mm_97373.1	chr11	77686135	77686335	+	1	NA	NA	NA	96	NM_001024205	68564	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0.050000	0.636816	
mm_93674.1	chr10	117710605	117710805	-	1	NA	NA	NA	53	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.140000	0.721393	
mm_162442.1	chr1	115684856	115685056	+	1	NA	NA	NA	-181	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.015000	0.527363	
mm_139195.1	chr17	47629693	47629893	+	1	NA	NA	NA	-897	NM_198421	224836	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	0.130000	0.706468	-39(CCCCTTTTAAAG,-,0.00),-38(CCCTTTTAAAGG,-,0.00),-37(CCTTTTAAAGGA,+,0.00)
mm_94444.1	chr11	6346446	6346646	+	1	NA	NA	NA	-48579	NM_001005867	52915	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.015000	0.532338	
mm_92019.1	chr10	62379809	62380009	-	1	NA	NA	NA	-1	NM_010438	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.000000	0.497512	
mm_48846.1	chr5	149368076	149368276	-	1	NA	NA	NA	-43630	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.015000	0.537313	
mm_93491.1	chr10	112002524	112002724	-	1	NA	NA	NA	-5360	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.010000	0.407960	-7(CCTTTTAGAAGA,+,0.00)
mm_66154.1	chr7	31149611	31149811	-	1	NA	NA	NA	1339	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.000000	0.507463	
mm_70750.1	chr8	19535345	19535545	+	1	NA	NA	NA	40348	NM_139220	246080	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	0.155000	0.800995	
mm_47254.1	chr5	121618795	121618995	-	1	NA	NA	NA	43	NM_178799	338350	Mm.482918	NM_178799	ENSMUSG00000042647	Acad12	9330129D05Rik	acyl-Coenzyme A dehydrogenase family, member 12	protein-coding	0.075000	0.611940	
mm_64913.1	chr7	16221932	16222132	-	1	NA	NA	NA	0	NM_027883	71723	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	0.095000	0.621891	
mm_9178.1	chr1	171057979	171058179	-	1	NA	NA	NA	1324	NM_010188	14131	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	0.020000	0.462687	
mm_138858.1	chr17	42435706	42435906	+	1	NA	NA	NA	119859	NM_028474	627626	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	0.020000	0.333333	
mm_172776.1	chr8	95271891	95272091	-	1	NA	NA	NA	34594	NM_145601	333329	Mm.484049	NM_145601	ENSMUSG00000031789	Cngb1	Cngb1b|Garp2|Gm1959	cyclic nucleotide gated channel beta 1	protein-coding	0.015000	0.582090	
mm_14524.1	chr2	132691903	132692103	+	1	NA	NA	NA	1720	NM_028637	73747	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0.010000	0.552239	
mm_78744.1	chr9	42094914	42095114	+	1	NA	NA	NA	29275	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.050000	0.547264	
mm_58935.1	chr7	18065880	18066080	+	1	NA	NA	NA	51	NM_001162523	67315	Mm.46089	NM_026087	ENSMUSG00000030366	Ceacam12	1600031J20Rik|Ceacam12-C1|Ceacam12-C3|Ceacam12C1|Ceacam12C3	carcinoembryonic antigen-related cell adhesion molecule 12	protein-coding	0.005000	0.462687	
mm_50172.1	chr6	41558412	41558612	+	1	NA	NA	NA	36736	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.527363	
mm_6228.1	chr1	66937400	66937600	-	1	NA	NA	NA	-2134	NM_001113387	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.010000	0.402985	
mm_159964.1	chr6	90301294	90301494	+	1	NA	NA	NA	124	NM_177738	243535	Mm.233854	NM_177738	ENSMUSG00000049694	BC048671	-	cDNA sequence BC048671	protein-coding	0.000000	0.402985	
mm_18453.1	chr2	60963027	60963227	-	1	NA	NA	NA	77	NM_020296	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.095000	0.691542	
mm_53436.1	chr6	134115142	134115342	+	1	NA	NA	NA	79542	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.010000	0.502488	
mm_37085.1	chr4	116406014	116406214	-	1	NA	NA	NA	58067	NM_001042743	17776	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0.030000	0.487562	-31(GGACATAAAAGA,-,0.00)
mm_30677.1	chr4	11169828	11170028	+	1	NA	NA	NA	13487	NM_021897	60599	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.020000	0.462687	
mm_85481.1	chr9	106066407	106066607	-	1	NA	NA	NA	30184	NM_026763	68553	Mm.28854	NM_026763	ENSMUSG00000032572	Col6a4	1110001D15Rik|AI413310|AU023415|Dvwa|EG235580|Vwa6	collagen, type VI, alpha 4	protein-coding	0.010000	0.432836	
mm_66729.1	chr7	46238453	46238653	-	1	NA	NA	NA	-63	NM_153677	72088	Mm.119709	NM_023649	ENSMUSG00000030838	Ush1c	2010016F01Rik|harmonin	Usher syndrome 1C	protein-coding	0.030000	0.651741	
mm_83329.1	chr9	44233847	44234047	-	1	NA	NA	NA	99	NM_007619	12402	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.155000	0.786070	
mm_119972.1	chr14	55540373	55540573	+	1	NA	NA	NA	207	NM_028994	74551	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding	0.070000	0.666667	
mm_81203.1	chr9	107569024	107569224	+	1	NA	NA	NA	-39	NM_010489	15587	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	0.075000	0.661692	-34(GATTCTTAAAGG,-,0.00),-31(TCTTAAAGGGCC,+,0.00)
mm_48319.1	chr5	138977044	138977244	-	1	NA	NA	NA	17809	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.055000	0.532338	
mm_40889.1	chr5	75110228	75110428	+	1	NA	NA	NA	7	NR_045792	100503184	Mm.386273	NR_045792	ENSMUSG00000107192	Gm19583	-	predicted gene, 19583	ncRNA	0.045000	0.492537	66(GTTTTAAAAGAC,+,0.00)
mm_104160.1	chr11	87293954	87294154	-	1	NA	NA	NA	64940	NM_177167	320472	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	0.000000	0.393035	
mm_67768.1	chr7	93179574	93179774	-	1	NA	NA	NA	99795	NM_021427	58238	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.045000	0.482587	-65(ATTTTTATGGGC,+,0.00)
mm_42615.1	chr5	118027697	118027897	+	1	NA	NA	NA	-27	NM_021344	57816	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	0.150000	0.776119	-2(CGCTATAAGAGG,-,0.00)
mm_156902.1	chrX	168874666	168874866	+	1	NA	NA	NA	79667	NM_009707	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.000000	0.358209	
mm_161989.1	chr19	32349201	32349401	-	1	NA	NA	NA	15	NM_001168525	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.005000	0.373134	15(GCTTTTATAGCT,+,0.00)
mm_9925.1	chr1	189729564	189729764	-	1	NA	NA	NA	1396	NM_008976	19250	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|OTTMUSG00000022087|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	0.040000	0.592040	
mm_101695.1	chr11	40750618	40750818	-	1	NA	NA	NA	4568	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.010000	0.328358	
mm_35637.1	chr4	43515694	43515894	-	1	NA	NA	NA	7760	NM_009416	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.010000	0.572139	
mm_138873.1	chr17	43087896	43088096	+	1	NA	NA	NA	70295	NR_045155	545207	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0.015000	0.472637	
mm_152585.1	chr19	11603782	11603982	-	1	NA	NA	NA	922	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.000000	0.323383	
mm_11145.1	chr2	28513016	28513216	+	1	NA	NA	NA	-51	NM_009058	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.160000	0.756219	
mm_124170.1	chr14	93765962	93766162	-	1	NA	NA	NA	122826	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.278607	28(CCTTATAAACTT,+,0.00),49(TGCTTTAAAAAA,-,0.00)
mm_148349.1	chr18	84679002	84679202	-	1	NA	NA	NA	2957	NM_001289531	66054	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.005000	0.343284	
mm_27845.1	chr3	79156253	79156453	-	1	NA	NA	NA	-10478	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.005000	0.348259	
mm_140378.1	chr17	87025496	87025696	+	1	NA	NA	NA	35	NM_019936	56724	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	0.065000	0.606965	
mm_320.1	chr1	24678520	24678720	+	1	NA	NA	NA	76	NM_026719	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.135000	0.731343	
mm_2904.1	chr1	131970464	131970664	+	1	NA	NA	NA	-45	NM_145977	212980	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.010000	0.512438	-16(ACCCCTAAAAGC,-,0.00)
mm_39158.1	chr4	155491126	155491326	-	1	NA	NA	NA	-135	NM_001160017	14688	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.100000	0.686567	
mm_134088.1	chr16	8792240	8792440	-	1	NA	NA	NA	-37760	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.045000	0.542289	
mm_68203.1	chr7	104381049	104381249	-	1	NA	NA	NA	-22503	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.005000	0.402985	
mm_150088.1	chr19	29414683	29414883	+	1	NA	NA	NA	3864	NM_021396	58205	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.005000	0.437811	
mm_13400.1	chr2	103970236	103970436	+	1	NA	NA	NA	49	NM_001142335	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.145000	0.786070	
mm_145627.1	chr18	61109648	61109848	+	1	NA	NA	NA	4176	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.040000	0.567164	
mm_142207.1	chr17	36988637	36988837	-	1	NA	NA	NA	767	NM_001115075	240095	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	0.080000	0.616915	
mm_126358.1	chr15	80012235	80012435	+	1	NA	NA	NA	2473	NM_011057	18591	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.160000	0.756219	
mm_168701.1	chr11	97781769	97781969	-	1	NA	NA	NA	-103	NR_028078	100302498	Mm.453536	NR_028078	ENSMUSG00000064901	Snora21	MBI-3	small nucleolar RNA, H/ACA box 21	snoRNA	0.080000	0.611940	
mm_94366.1	chr11	5012590	5012790	+	1	NA	NA	NA	25866	NM_007454	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.005000	0.502488	
mm_70928.1	chr8	25812994	25813194	+	1	NA	NA	NA	4620	NM_011485	20845	Mm.293314	NM_011485	ENSMUSG00000031574	Star	AV363654|D8Ertd419e|stARD1	steroidogenic acute regulatory protein	protein-coding	0.010000	0.427861	
mm_49452.1	chr6	29366026	29366226	+	1	NA	NA	NA	14387	NM_007538	12057	Mm.56987	NM_007538	ENSMUSG00000058831	Opn1sw	AW551857|Bcp	opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)	protein-coding	0.020000	0.447761	
mm_25787.1	chr3	126780312	126780512	+	1	NA	NA	NA	162974	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.015000	0.517413	
mm_25477.1	chr3	108912318	108912518	+	1	NA	NA	NA	-714	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.015000	0.378109	
mm_142477.1	chr17	45686140	45686340	-	1	NA	NA	NA	-22	NM_198167	224807	Mm.157904	NM_198167	ENSMUSG00000036026	Tmem63b	BC026370	transmembrane protein 63b	protein-coding	0.120000	0.791045	
mm_4213.1	chr1	171281213	171281413	+	1	NA	NA	NA	-127	NM_008911	19044	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	0.045000	0.517413	
mm_103023.1	chr11	69734949	69735149	-	1	NA	NA	NA	23584	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.005000	0.517413	
mm_152332.1	chr19	9964534	9964734	-	1	NA	NA	NA	-15966	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.015000	0.467662	-91(GGCTCTTTAAGA,-,0.00)
mm_112426.1	chr13	4228605	4228805	+	1	NA	NA	NA	-5035	NM_001013785	432720	Mm.22832	NM_001013785	ENSMUSG00000071551	Akr1c19	1810010N06Rik	aldo-keto reductase family 1, member C19	protein-coding	0.005000	0.422886	
mm_141997.1	chr17	35190146	35190346	-	1	NA	NA	NA	-1806	NM_010734	16988	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	0.010000	0.522388	
mm_166544.1	chr6	34438509	34438709	+	1	NA	NA	NA	26247	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.000000	0.512438	
mm_24980.1	chr3	96829992	96830192	+	1	NA	NA	NA	27	NM_021517	59020	Mm.489677	NM_021517	ENSMUSG00000038298	Pdzk1	1700023D20Rik|2610507N21Rik|4921513F16Rik|AI267131|AI314638|AL022680|D3Ertd537e|Pdzd1|mPDZK1	PDZ domain containing 1	protein-coding	0.040000	0.532338	-34(GCTTTTAAATCA,+,0.00)
mm_137183.1	chr17	23816267	23816467	+	1	NA	NA	NA	12742	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.025000	0.457711	
mm_97441.1	chr11	78178872	78179072	+	1	NA	NA	NA	145	NR_106113	102465761		NR_106113	ENSMUSG00000099101	Mir7653	Gm27900|mmu-mir-7653	microRNA 7653	ncRNA	0.075000	0.656716	
mm_131321.1	chr16	11984306	11984506	+	1	NA	NA	NA	293	NM_001174086	72555	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	0.160000	0.815920	
mm_114172.1	chr13	55478558	55478758	+	1	NA	NA	NA	-882	NR_105909	102465569		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0.000000	0.402985	
mm_89290.1	chr10	87892500	87892700	+	1	NA	NA	NA	31489	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.000000	0.412935	-13(AGCCATTAAAGA,-,0.00)
mm_107915.1	chr12	71015915	71016115	+	1	NA	NA	NA	48	NM_001081195	238247	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|MmRBBP1|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.090000	0.611940	
mm_50016.1	chr6	41113467	41113667	+	1	NA	NA	NA	-78058	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.010000	0.507463	
mm_130489.1	chr15	98778435	98778635	-	1	NA	NA	NA	-385	NM_011718	22410	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	0.050000	0.611940	
mm_101522.1	chr11	32824450	32824650	-	1	NA	NA	NA	44	NM_027050	69351	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	0.015000	0.527363	
mm_75466.1	chr8	47948296	47948496	-	1	NA	NA	NA	42155	NM_133791	52357	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.015000	0.422886	
mm_157624.1	chrX	56553062	56553262	-	1	NA	NA	NA	-3556	NM_001033372	270599	Mm.424438	NM_001033372	ENSMUSG00000064016	Gm648	-	predicted gene 648	protein-coding	0.035000	0.472637	
mm_153229.1	chr19	34879201	34879401	-	1	NA	NA	NA	154	NM_001114339	75735	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	0.040000	0.567164	43(CCCTTTAGGCTC,+,0.00)
mm_104992.1	chr11	100320281	100320481	-	1	NA	NA	NA	432	NM_011508	20918	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.095000	0.686567	
mm_87458.1	chr10	51484362	51484562	+	1	NA	NA	NA	3850	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.000000	0.442786	
mm_53664.1	chr6	141524509	141524709	+	1	NA	NA	NA	223	NM_021471	58807	Mm.284495	NM_021471	ENSMUSG00000030235	Slco1c1	OATP-14|OATP-F|Oatp2|Oatpf|Slc21a14	solute carrier organic anion transporter family, member 1c1	protein-coding	0.010000	0.507463	
mm_103557.1	chr11	77720899	77721099	-	1	NA	NA	NA	4294	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.020000	0.477612	
mm_60039.1	chr7	31037731	31037931	+	1	NA	NA	NA	2486	NR_106017	102465635		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.010000	0.542289	
mm_169026.1	chr13	113794406	113794606	+	1	NA	NA	NA	-2	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.080000	0.606965	-76(CCTTTTATAGAC,+,0.00)
mm_117066.1	chr13	58826913	58827113	-	1	NA	NA	NA	19316	NM_001025074	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.035000	0.577114	
mm_112159.1	chr12	113329371	113329571	-	1	NA	NA	NA	143568	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.015000	0.512438	
mm_9570.1	chr1	173979736	173979936	-	1	NA	NA	NA	3008	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.005000	0.383085	
mm_97690.1	chr11	80153977	80154177	+	1	NA	NA	NA	-85	NM_172133	216991	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.080000	0.671642	
mm_71753.1	chr8	65820497	65820697	+	1	NA	NA	NA	202072	NM_175188	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.000000	0.283582	
mm_125328.1	chr15	38644308	38644508	+	1	NA	NA	NA	-17496	NM_025494	66335	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.005000	0.472637	
mm_9691.1	chr1	178337066	178337266	-	1	NA	NA	NA	618	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.145000	0.731343	
mm_148761.1	chr19	6061290	6061490	+	1	NA	NA	NA	183	NM_013859	29805	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	0.150000	0.711443	
mm_93216.1	chr10	94950686	94950886	-	1	NA	NA	NA	-6208	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.055000	0.562189	
mm_71532.1	chr8	46921767	46921967	+	1	NA	NA	NA	-65020	NM_177304	320981	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.035000	0.502488	-82(TCGCATAAAAGA,-,0.00)
mm_16900.1	chr2	13410703	13410903	-	1	NA	NA	NA	81073	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.020000	0.562189	
mm_157553.1	chrX	51840516	51840716	-	1	NA	NA	NA	-39383	NM_031388	83563	Mm.242827	NM_031388	ENSMUSG00000055780	Usp26	-	ubiquitin specific peptidase 26	protein-coding	0.020000	0.407960	
mm_165822.1	chr3	147064332	147064532	+	1	NA	NA	NA	212065	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.015000	0.512438	
mm_127102.1	chr15	97791459	97791659	+	1	NA	NA	NA	7194	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.015000	0.587065	
mm_7907.1	chr1	133670355	133670555	-	1	NA	NA	NA	-9056	NM_144530	70579	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	0.030000	0.522388	
mm_18658.1	chr2	70089625	70089825	-	1	NA	NA	NA	50599	NM_177376	329421	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0.000000	0.368159	-39(CTCTATATAAAA,-,0.00)
mm_12860.1	chr2	83765398	83765598	+	1	NA	NA	NA	41101	NM_008402	16410	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.005000	0.358209	
mm_156446.1	chrX	142681761	142681961	+	1	NA	NA	NA	135	NM_001199360	209497	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	0.075000	0.731343	
mm_95347.1	chr11	48800766	48800966	+	1	NA	NA	NA	506	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.030000	0.497512	
mm_160230.1	chr7	102604327	102604527	+	1	NA	NA	NA	71	NM_147102	259106	Mm.377848	NM_147102	ENSMUSG00000073973	Olfr552	MOR28-1	olfactory receptor 552	protein-coding	0.005000	0.482587	
mm_100119.1	chr11	115887531	115887731	+	1	NA	NA	NA	-12508	NM_183259	66528	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	0.025000	0.567164	
mm_45982.1	chr5	90476399	90476599	-	1	NA	NA	NA	-14215	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.005000	0.343284	
mm_106328.1	chr11	118318627	118318827	-	1	NA	NA	NA	23807	NM_021440	58251	Mm.439815	NM_021440	ENSMUSG00000076433	BC100451	Cep295nl|Ddc8|FS39|Kiaa1731nl	cDNA sequence BC100451	protein-coding	0.010000	0.492537	63(CCTTTAAAACTC,+,0.00)
mm_131548.1	chr16	17894115	17894315	+	1	NA	NA	NA	12	NM_009435	22114	Mm.439725	NM_009435	ENSMUSG00000041566	Tssk1	Stk22a|TSK-1|Tsk1|Tssk|Tssk1b	testis-specific serine kinase 1	protein-coding	0.000000	0.542289	
mm_150381.1	chr19	36347707	36347907	+	1	NA	NA	NA	-31260	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.025000	0.472637	
mm_20456.1	chr2	129365090	129365290	-	1	NA	NA	NA	-4712	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.015000	0.442786	
mm_138115.1	chr17	34137913	34138113	+	1	NA	NA	NA	-7403	NM_010388	15000	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0.030000	0.557214	
mm_69033.1	chr7	126798154	126798354	-	1	NA	NA	NA	924	NM_001177307	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.020000	0.512438	
mm_49587.1	chr6	30642891	30643091	+	1	NA	NA	NA	3773	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.025000	0.542289	
mm_96573.1	chr11	69045809	69046009	+	1	NA	NA	NA	272	NM_011496	20877	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.060000	0.636816	
mm_163035.1	chr11	52253778	52253978	+	1	NA	NA	NA	21883	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.035000	0.572139	
mm_9610.1	chr1	176213644	176213844	-	1	NA	NA	NA	198	NM_001195816	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	0.035000	0.567164	
mm_25156.1	chr3	103028926	103029126	+	1	NA	NA	NA	8480	NM_144901	229663	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0.015000	0.363184	
mm_5831.1	chr1	52817443	52817643	-	1	NA	NA	NA	145	NM_008384	16329	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	0.070000	0.636816	
mm_159516.1	chr4	60222563	60222763	-	1	NA	NA	NA	-64	NM_001134676	100041687	Mm.457982	NM_001134676	ENSMUSG00000078687	Mup8	Gm12809|Mup5|OTTMUSG00000008509	major urinary protein 8	protein-coding	0.005000	0.343284	
mm_97355.1	chr11	77496237	77496437	+	1	NA	NA	NA	2925	NM_001004144	216963	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0.005000	0.452736	
mm_144531.1	chr18	25168522	25168722	+	1	NA	NA	NA	255	NM_001142698	66648	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.130000	0.741294	
mm_115255.1	chr13	110399703	110399903	+	1	NA	NA	NA	4759	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.030000	0.492537	
mm_66964.1	chr7	62464391	62464591	-	1	NA	NA	NA	19	NM_013788	27412	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	0.095000	0.631841	
mm_33965.1	chr4	137563853	137564053	+	1	NA	NA	NA	11227	NM_001033979	435811	Mm.359646	NM_001033979	ENSMUSG00000094035	Ldlrad2	-	low density lipoprotein receptor A domain containing 2	protein-coding	0.040000	0.636816	-63(GGCCCTAAGAGC,-,0.00)
mm_147741.1	chr18	61109620	61109820	-	1	NA	NA	NA	4148	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.040000	0.582090	
mm_46667.1	chr5	108750876	108751076	-	1	NA	NA	NA	-12866	NR_040691	73295	Mm.416858	NR_040691	ENSMUSG00000101762	1700047L14Rik	-	RIKEN cDNA 1700047L14 gene	ncRNA	0.005000	0.427861	
mm_15648.1	chr2	163074543	163074743	+	1	NA	NA	NA	6553	NR_105970	102465607		NR_105970	ENSMUSG00000099091	Mir7003	Gm27340|mmu-mir-7003	microRNA 7003	ncRNA	0.035000	0.592040	
mm_89853.1	chr10	107271796	107271996	+	1	NA	NA	NA	65	NM_001033223	108030	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding	0.075000	0.621891	
mm_38785.1	chr4	148087894	148088094	-	1	NA	NA	NA	70	NM_009642	11610	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.135000	0.726368	
mm_60409.1	chr7	44475946	44476146	+	1	NA	NA	NA	5699	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.507463	
mm_14616.1	chr2	136756007	136756207	+	1	NA	NA	NA	42657	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.025000	0.552239	
mm_47182.1	chr5	120753797	120753997	-	1	NA	NA	NA	-4049	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.005000	0.313433	
mm_32148.1	chr4	99715561	99715761	+	1	NA	NA	NA	31	NM_001081264	320438	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding	0.115000	0.711443	
mm_138045.1	chr17	33925380	33925580	+	1	NA	NA	NA	-4414	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.055000	0.646766	
mm_133197.1	chr16	73011499	73011699	+	1	NA	NA	NA	348450	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.015000	0.467662	
mm_106382.1	chr11	118495178	118495378	-	1	NA	NA	NA	18318	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.020000	0.577114	
mm_94275.1	chr11	3895224	3895424	+	1	NA	NA	NA	84	NM_173745	75219	Mm.32588	NM_173745	ENSMUSG00000047205	Dusp18	4930527G07Rik|AI430870|BB028064|DSP18|DUSP20|LMWDSP20	dual specificity phosphatase 18	protein-coding	0.065000	0.606965	
mm_105813.1	chr11	111427909	111428109	-	1	NA	NA	NA	361845	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.005000	0.422886	
mm_41316.1	chr5	90470671	90470871	+	1	NA	NA	NA	9901	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.398010	
mm_41560.1	chr5	93104734	93104934	+	1	NA	NA	NA	11418	NM_001347377	52398	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.010000	0.368159	
mm_22673.1	chr3	14886737	14886937	+	1	NA	NA	NA	411	NM_009801	12349	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0.110000	0.686567	
mm_122784.1	chr14	54410563	54410763	-	1	NA	NA	NA	-1191	NM_001253680	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.035000	0.542289	
mm_105916.1	chr11	114999171	114999371	-	1	NA	NA	NA	2609	NM_134158	140497	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0.000000	0.462687	-40(ATCTCTTTAAGG,-,0.00)
mm_61176.1	chr7	60036915	60037115	+	1	NA	NA	NA	-31859	NM_033174	84704	Mm.274995	NM_033174	ENSMUSG00000000948	Snurf	2410045I01Rik|Snrpn	SNRPN upstream reading frame	protein-coding	0.005000	0.373134	
mm_55389.1	chr6	59024391	59024591	-	1	NA	NA	NA	11	NM_153574	58909	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0.025000	0.557214	
mm_104429.1	chr11	94951134	94951334	-	1	NA	NA	NA	15010	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.040000	0.572139	
mm_28502.1	chr3	92485794	92485994	-	1	NA	NA	NA	-13	NM_009264	20753	Mm.331191	NM_009264	ENSMUSG00000050359	Sprr1a	AI528815|SPR1a|mSPRR1A	small proline-rich protein 1A	protein-coding	0.000000	0.417910	-33(TCTTATAAAAAG,-,0.00)
mm_82594.1	chr9	21248316	21248516	-	1	NA	NA	NA	27	NM_053190	94226	Mm.190619	NM_053190	ENSMUSG00000045087	S1pr5	Edg8|S1P5|lpB4	sphingosine-1-phosphate receptor 5	protein-coding	0.080000	0.656716	
mm_1823.1	chr1	82587050	82587250	+	1	NA	NA	NA	229	NM_007734	12828	Mm.389135	NM_007734	ENSMUSG00000079465	Col4a3	[a]3(IV)|alpha3(IV)	collagen, type IV, alpha 3	protein-coding	0.045000	0.611940	
mm_79555.1	chr9	58014390	58014590	+	1	NA	NA	NA	-462	NM_019779	13070	Mm.302865	NM_019779	ENSMUSG00000032323	Cyp11a1	Cyp11a|Cypxia1|D9Ertd411e|P450scc|Scc|cscc	cytochrome P450, family 11, subfamily a, polypeptide 1	protein-coding	0.010000	0.442786	
mm_12539.1	chr2	72297748	72297948	+	1	NA	NA	NA	12147	NM_178084	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.030000	0.597015	
mm_66181.1	chr7	34133156	34133356	-	1	NA	NA	NA	12	NM_207212	101543	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	0.175000	0.825871	
mm_14292.1	chr2	128845480	128845680	+	1	NA	NA	NA	-18352	NM_024237	70370	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	0.010000	0.308458	
mm_119845.1	chr14	54439802	54440002	+	1	NA	NA	NA	8304	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.015000	0.562189	
mm_45247.1	chr5	59948176	59948376	-	1	NA	NA	NA	37726	NR_040683	71057	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.010000	0.383085	
mm_116570.1	chr13	47099280	47099480	-	1	NA	NA	NA	6841	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.025000	0.457711	
mm_36466.1	chr4	82561591	82561791	-	1	NA	NA	NA	53702	NR_137202	102635783	Mm.41666	NR_137202		Gm11266	OTTMUSG00000000396	predicted gene 11266	ncRNA	0.010000	0.472637	
mm_93272.1	chr10	95779610	95779810	-	1	NA	NA	NA	-160953	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.010000	0.457711	
mm_62489.1	chr7	101905851	101906051	+	1	NA	NA	NA	114	NM_025605	66508	Mm.30003	NM_025605	ENSMUSG00000030842	Lamtor1	2400001E08Rik|Pdro|p18	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding	0.115000	0.696517	
mm_11465.1	chr2	32288150	32288350	+	1	NA	NA	NA	-3	NM_133852	99412	Mm.106376	NM_133852	ENSMUSG00000002546	Golga2	AW555139|GM130|mKIAA4150	golgi autoantigen, golgin subfamily a, 2	protein-coding	0.080000	0.646766	
mm_171030.1	chr2	88711483	88711683	-	1	NA	NA	NA	-10256	NM_146464	258456	Mm.377510	NM_146464	ENSMUSG00000075120	Olfr1196	MOR225-5	olfactory receptor 1196	protein-coding	0.055000	0.522388	
mm_144854.1	chr18	36664045	36664245	+	1	NA	NA	NA	85	NM_201256	108112	Mm.24790	NM_201256	ENSMUSG00000090264	Eif4ebp3	4e-bp3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding	0.040000	0.592040	
mm_80591.1	chr9	85842771	85842971	+	1	NA	NA	NA	19	NM_001164792	21983	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	0.085000	0.726368	
mm_72453.1	chr8	83168559	83168759	+	1	NA	NA	NA	3307	NM_027758	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.005000	0.393035	42(TGCCCTTAAAGC,-,0.00)
mm_84953.1	chr9	83250130	83250330	-	1	NA	NA	NA	-103623	NM_026122	94353	Mm.244426	NM_026122	ENSMUSG00000066456	Hmgn3	1110002A15Rik|6330514M13Rik|BB071015|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding	0.015000	0.477612	
mm_69943.1	chr7	142165651	142165851	-	1	NA	NA	NA	10254	NM_027844	71623	Mm.293700	NM_027844	ENSMUSG00000054759	Krtap5-2	4833428E21Rik	keratin associated protein 5-2	protein-coding	0.000000	0.542289	-36(GGGTATAAAAGC,-,0.00)
mm_138903.1	chr17	43569315	43569515	+	1	NA	NA	NA	964	NM_013737	27226	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.035000	0.532338	21(ACCTCTAAAAGG,-,0.00),22(CCTCTAAAAGGC,+,0.00)
mm_25951.1	chr3	131638335	131638535	+	1	NA	NA	NA	72403	NM_001289477	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.035000	0.577114	
mm_130869.1	chr15	102215684	102215884	-	1	NA	NA	NA	11213	NM_001289695	68744	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0.025000	0.487562	
mm_4723.1	chr1	181210729	181210929	+	1	NA	NA	NA	1149	NM_145514	226757	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.055000	0.601990	
mm_144772.1	chr18	35828707	35828907	+	1	NA	NA	NA	-1011	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.005000	0.517413	
mm_117980.1	chr13	100108081	100108281	-	1	NA	NA	NA	162	NM_011353	20365	Mm.286177	NM_011353	ENSMUSG00000021643	Serf1	4F5|Msmac1|m4F5	small EDRK-rich factor 1	protein-coding	0.115000	0.701493	
mm_24335.1	chr3	89662599	89662799	+	1	NA	NA	NA	-52323	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.020000	0.532338	
mm_155670.1	chrX	90744625	90744825	+	1	NA	NA	NA	-147417	NM_001101450	212952	Mm.477436	NM_001101450	ENSMUSG00000091497	Gm44	-	predicted gene 44	protein-coding	0.005000	0.442786	
mm_124596.1	chr15	3275117	3275317	+	1	NA	NA	NA	4240	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.000000	0.383085	-22(TCTTTAAGAGCA,+,0.00)
mm_148198.1	chr18	79109365	79109565	-	1	NA	NA	NA	-74	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.150000	0.701493	
mm_106638.1	chr11	120990987	120991187	-	1	NA	NA	NA	246	NM_139059	104318	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0.135000	0.731343	
mm_155473.1	chrX	73640082	73640282	+	1	NA	NA	NA	741	NM_029352	75590	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	0.065000	0.636816	
mm_157457.1	chrX	43428900	43429100	-	1	NA	NA	NA	-154216	NM_011855	23963	Mm.327698	NM_011855	ENSMUSG00000016150	Tenm1	Odz1|Odz2|TCAP-1|Ten-m1|ten-1	teneurin transmembrane protein 1	protein-coding	0.090000	0.597015	
mm_63034.1	chr7	121074599	121074799	+	1	NA	NA	NA	-169	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.010000	0.432836	-62(CCATTTAGAGTT,+,0.00)
mm_23818.1	chr3	79936367	79936567	+	1	NA	NA	NA	50537	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.015000	0.487562	
mm_132564.1	chr16	38089700	38089900	+	1	NA	NA	NA	-540	NR_033221	414072	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.095000	0.746269	
mm_64077.1	chr7	140920841	140921041	+	1	NA	NA	NA	39	NM_133946	101613	Mm.386833	NM_133946	ENSMUSG00000038745	Nlrp6	AI504961|Avr|Nalp6|Navr|Navr/Avr|Non-AVR|Pypaf5	NLR family, pyrin domain containing 6	protein-coding	0.010000	0.477612	
mm_106487.1	chr11	120234977	120235177	-	1	NA	NA	NA	2130	NM_198423	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.085000	0.636816	
mm_74677.1	chr8	13974861	13975061	-	1	NA	NA	NA	-184	NM_173744	72148	Mm.5727	NM_173744	ENSMUSG00000050052	Tdrp	2610019F03Rik	testis development related protein	protein-coding	0.060000	0.631841	
mm_96248.1	chr11	62575784	62575984	+	1	NA	NA	NA	1398	NM_011706	22368	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0.040000	0.606965	
mm_90479.1	chr10	127879219	127879419	+	1	NA	NA	NA	9380	NM_017473	54150	Mm.6696	NM_017473	ENSMUSG00000040134	Rdh7	AI194929|CRAD2	retinol dehydrogenase 7	protein-coding	0.005000	0.601990	
mm_82914.1	chr9	35053642	35053842	-	1	NA	NA	NA	-62986	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.000000	0.422886	3(CCTTTTAAGACA,+,0.00)
mm_64740.1	chr7	4752669	4752869	-	1	NA	NA	NA	133	NM_183406	333182	Mm.29625	NM_183405	ENSMUSG00000051811	Cox6b2	1700067P11Rik|BC048670|COXVIB2	cytochrome c oxidase subunit VIb polypeptide 2	protein-coding	0.045000	0.587065	
mm_9956.1	chr1	191026089	191026289	-	1	NA	NA	NA	1	NM_001081259	226844	Mm.134053	NM_198025	ENSMUSG00000066595	Mfsd7b	9630055N22Rik|FLVCR|Flvcr1	major facilitator superfamily domain containing 7B	protein-coding	0.105000	0.686567	
mm_59979.1	chr7	30465245	30465445	+	1	NA	NA	NA	246	NR_004443	445267	Mm.398140	NR_004443	ENSMUSG00000087009	Nphs1os	Nphs1as	nephrosis 1 homolog, nephrin, opposite strand	ncRNA	0.020000	0.582090	
mm_10858.1	chr2	25054378	25054578	+	1	NA	NA	NA	99	NM_001177655	56876	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.120000	0.741294	
mm_163952.1	chr14	54463821	54464021	+	1	NA	NA	NA	-226	NM_022993	65107	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	0.045000	0.462687	
mm_238.1	chr1	19208905	19209105	+	1	NA	NA	NA	91	NM_001286340	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.060000	0.497512	
mm_81392.1	chr9	108987796	108987996	+	1	NA	NA	NA	1733	NM_145077	171530	Mm.388865	NM_145077	ENSMUSG00000049699	Ucn2	Ucn II|Ucn-2|ucn-II	urocortin 2	protein-coding	0.015000	0.592040	
mm_154293.1	chr19	61140698	61140898	-	1	NA	NA	NA	42	NR_131956	414758	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0.030000	0.527363	
mm_118921.1	chr14	26894517	26894717	+	1	NA	NA	NA	13	NM_080856	142687	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	0.010000	0.393035	
mm_158514.1	chrX	143393756	143393956	-	1	NA	NA	NA	406	NM_031258	83453	Mm.157697	NM_031258	ENSMUSG00000031283	Chrdl1	CHL|CHL1|Nrln1|VOPT	chordin-like 1	protein-coding	0.040000	0.616915	
mm_71062.1	chr8	33964134	33964334	+	1	NA	NA	NA	-34371	NM_001042675	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.010000	0.487562	
mm_151869.1	chr19	5797809	5798009	-	1	NA	NA	NA	-1928	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.015000	0.447761	-87(GAGTTTAAATGC,-,0.00),-8(GGGTTTAAAGAG,-,0.00),53(TTGCATATAAGC,-,0.00)
mm_61768.1	chr7	82867242	82867442	+	1	NA	NA	NA	9	NM_175366	108797	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0.095000	0.716418	
mm_104029.1	chr11	86201518	86201718	-	1	NA	NA	NA	258	NR_130958	74038	Mm.171304	NR_130958	ENSMUSG00000085208	Brip1os	4632419I22Rik	BRCA1 interacting protein C-terminal helicase 1, opposite strand	ncRNA	0.085000	0.562189	
mm_2542.1	chr1	107511366	107511566	+	1	NA	NA	NA	43	NM_001174170	18788	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0.020000	0.467662	-75(TCTTATAAAACC,+,0.00)
mm_170635.1	chr1	98594683	98594883	+	1	NA	NA	NA	173659	NM_027584	70866	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding	0.010000	0.492537	
mm_66529.1	chr7	45135991	45136191	-	1	NA	NA	NA	341	NM_013520	14256	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	0.045000	0.656716	
mm_36350.1	chr4	73950685	73950885	-	1	NA	NA	NA	61	NM_027981	71886	Mm.158769	NM_027104	ENSMUSG00000028396	2310002L09Rik	2310003M01Rik|AV083437	RIKEN cDNA 2310002L09 gene	protein-coding	0.000000	0.398010	
mm_13822.1	chr2	119237540	119237740	+	1	NA	NA	NA	280	NM_016907	20732	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	0.100000	0.671642	
mm_143875.1	chr17	84187128	84187328	-	1	NA	NA	NA	719	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.055000	0.587065	
mm_51249.1	chr6	71809322	71809522	+	1	NA	NA	NA	14362	NM_025430	66223	Mm.28579	NM_025430	ENSMUSG00000052962	Mrpl35	1110066C01Rik	mitochondrial ribosomal protein L35	protein-coding	0.015000	0.447761	
mm_132326.1	chr16	33794389	33794589	+	1	NA	NA	NA	452	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.020000	0.472637	
mm_144841.1	chr18	36560544	36560744	+	1	NA	NA	NA	41	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.085000	0.651741	
mm_69215.1	chr7	127512312	127512512	-	1	NA	NA	NA	429	NM_001304266	100043597	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	0.130000	0.756219	
mm_16890.1	chr2	13156611	13156811	-	1	NA	NA	NA	114704	NM_009105	20163	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.000000	0.437811	-99(TGCTATATAAGT,-,0.00)
mm_159986.1	chr6	114403720	114403920	+	1	NA	NA	NA	154	NM_001252643	15465	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.020000	0.592040	
mm_41084.1	chr5	87679935	87680135	+	1	NA	NA	NA	13827	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.293532	
mm_170496.1	chr19	23140836	23141036	+	1	NA	NA	NA	-290	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.110000	0.681592	57(CCTTTTAAATGT,+,0.00)
mm_123632.1	chr14	68525157	68525357	-	1	NA	NA	NA	8432	NM_007402	11500	Mm.261495	NM_007402	ENSMUSG00000022056	Adam7	ADAM 7|EAP1|EAPI	a disintegrin and metallopeptidase domain 7	protein-coding	0.015000	0.398010	
mm_51490.1	chr6	83056676	83056876	+	1	NA	NA	NA	-1068	NM_033606	93838	Mm.140332	NM_033606	ENSMUSG00000009145	Dqx1	2310066E11Rik	DEAQ RNA-dependent ATPase	protein-coding	0.020000	0.492537	-29(TCTTTTAAACAG,+,0.00)
mm_41293.1	chr5	90463983	90464183	+	1	NA	NA	NA	3213	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.482587	
mm_109234.1	chr12	108853393	108853593	+	1	NA	NA	NA	2364	NM_001012310	104910	Mm.202653	NM_001012310	ENSMUSG00000048856	Slc25a47	AI132487|AI876593|HDMCP	solute carrier family 25, member 47	protein-coding	0.010000	0.542289	
mm_97770.1	chr11	82046424	82046624	+	1	NA	NA	NA	812	NM_013654	20306	Mm.341574	NM_013654	ENSMUSG00000035373	Ccl7	MCP-3|Scya7|fic|marc|mcp3	chemokine (C-C motif) ligand 7	protein-coding	0.005000	0.447761	
mm_114761.1	chr13	85197148	85197348	+	1	NA	NA	NA	7863	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0.005000	0.283582	
mm_122488.1	chr14	46390415	46390615	-	1	NA	NA	NA	154	NM_001316360	12159	Mm.6813	NM_007554	ENSMUSG00000021835	Bmp4	Bmp-4|Bmp2b|Bmp2b-1|Bmp2b1	bone morphogenetic protein 4	protein-coding	0.050000	0.597015	
mm_169450.1	chr1	46076011	46076211	-	1	NA	NA	NA	9373	NM_001160386	227058	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	0.030000	0.407960	
mm_148561.1	chr19	4756340	4756540	+	1	NA	NA	NA	-85	NM_025717	66704	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	0.105000	0.736318	
mm_55140.1	chr6	51346663	51346863	-	1	NA	NA	NA	-32947	NR_110455	625167	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	0.010000	0.432836	
mm_159510.1	chr4	56802195	56802395	+	1	NA	NA	NA	-34	NM_001081420	230234	Mm.268148	NM_001081420	ENSMUSG00000038827	Fam206a	simiate	family with sequence similarity 206, member A	protein-coding	0.110000	0.661692	
mm_137348.1	chr17	25184483	25184683	+	1	NA	NA	NA	22	NM_183150	214489	Mm.274433	NM_183150	ENSMUSG00000067722	BC003965	Ccsmst1	cDNA sequence BC003965	protein-coding	0.110000	0.616915	
mm_31124.1	chr4	42969859	42970059	+	1	NA	NA	NA	13	NM_026088	67317	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	0.015000	0.497512	
mm_21863.1	chr2	165885463	165885663	-	1	NA	NA	NA	-725	NM_001252587	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.015000	0.532338	
mm_140253.1	chr17	84226479	84226679	+	1	NA	NA	NA	-38632	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.010000	0.492537	
mm_106253.1	chr11	117827302	117827502	-	1	NA	NA	NA	-1388	NM_009387	21877	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.005000	0.462687	
mm_39917.1	chr5	31485786	31485986	+	1	NA	NA	NA	27	NM_026296	67656	Mm.23355	NM_026296	ENSMUSG00000029138	4930548H24Rik	AI427865	RIKEN cDNA 4930548H24 gene	protein-coding	0.000000	0.497512	
mm_112276.1	chr12	114300336	114300536	-	1	NA	NA	NA	169030	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.010000	0.422886	
mm_38884.1	chr4	149702748	149702948	-	1	NA	NA	NA	-1219	NM_001029837	18707	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol 3-kinase catalytic delta polypeptide	protein-coding	0.035000	0.592040	
mm_121853.1	chr14	20663592	20663792	-	1	NA	NA	NA	882	NM_001310432	68760	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	0.005000	0.547264	
mm_167096.1	chr7	109384768	109384968	+	1	NA	NA	NA	54185	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	0.005000	0.621891	
mm_16396.1	chr2	179442335	179442535	+	1	NA	NA	NA	4	NM_009867	12561	Mm.184711	NM_009867	ENSMUSG00000000305	Cdh4	AW120700|R-CAD|R-Cadh|Rcad	cadherin 4	protein-coding	0.155000	0.796020	-92(CTCCTTTAAGGC,-,0.00),-91(TCCTTTAAGGCC,+,0.00),-90(CCTTTAAGGCCC,+,0.00)
mm_145538.1	chr18	60806911	60807111	+	1	NA	NA	NA	3162	NM_010545	16149	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	0.015000	0.547264	
mm_169439.1	chr14	56415456	56415656	+	1	NA	NA	NA	12859	NM_001033043	30054	Mm.287783	NM_001033043	ENSMUSG00000000365	Rnf17	MMIP-2|Mmip2|TDRD4	ring finger protein 17	protein-coding	0.040000	0.472637	
mm_24446.1	chr3	90608399	90608599	+	1	NA	NA	NA	-23	NM_011312	20199	Mm.19946	NM_011312	ENSMUSG00000001023	S100a5	S100D9	S100 calcium binding protein A5	protein-coding	0.005000	0.517413	
mm_54210.1	chr6	25689454	25689654	-	1	NA	NA	NA	426	NM_010338	14763	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	0.020000	0.537313	
mm_114618.1	chr13	75943165	75943365	+	1	NA	NA	NA	559	NM_028493	73296	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	0.090000	0.646766	
mm_16719.1	chr2	7301768	7301968	-	1	NA	NA	NA	94132	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.005000	0.373134	
mm_166689.1	chr6	108688433	108688633	+	1	NA	NA	NA	-27599	NR_104577	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.010000	0.582090	
mm_68280.1	chr7	105599267	105599467	-	1	NA	NA	NA	749	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.020000	0.497512	
mm_68111.1	chr7	102065043	102065243	-	1	NA	NA	NA	-11	NM_029211	75212	Mm.101141	NM_029211	ENSMUSG00000070426	Rnf121	4930544L10Rik	ring finger protein 121	protein-coding	0.080000	0.656716	
mm_57085.1	chr6	122583840	122584040	-	1	NA	NA	NA	18504	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.010000	0.412935	
mm_49567.1	chr6	30640345	30640545	+	1	NA	NA	NA	1227	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.035000	0.626866	
mm_98654.1	chr11	96264176	96264376	+	1	NA	NA	NA	-888	NR_029721	387191		NR_029721	ENSMUSG00000065546	Mir196a-1	Mirn196|Mirn196a-1|miR-196|mir-196a-1	microRNA 196a-1	ncRNA	0.055000	0.552239	-40(GTCCCTAAAAGA,-,0.00)
mm_86896.1	chr10	22302907	22303107	+	1	NA	NA	NA	-3713	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.000000	0.412935	
mm_59416.1	chr7	27121571	27121771	+	1	NA	NA	NA	1716	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.010000	0.592040	
mm_114362.1	chr13	61827404	61827604	+	1	NA	NA	NA	55924	NR_028430	432812	Mm.317358	NR_028430		BC052688	-	cDNA sequence BC052688	pseudo	0.000000	0.268657	
mm_114101.1	chr13	54730145	54730345	+	1	NA	NA	NA	19629	NM_001316710	26913	Mm.41812	NM_012014	ENSMUSG00000069227	Gprin1	GRIN1|Z16	G protein-regulated inducer of neurite outgrowth 1	protein-coding	0.000000	0.402985	
mm_66711.1	chr7	46015814	46016014	-	1	NA	NA	NA	14372	NM_018795	27421	Mm.63514	NM_018795	ENSMUSG00000030834	Abcc6	Abcc1b|DCC|Dyscalc1|Mrp6|dyscalc	ATP-binding cassette, sub-family C (CFTR/MRP), member 6	protein-coding	0.000000	0.532338	
mm_7591.1	chr1	125435575	125435775	-	1	NA	NA	NA	52	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.125000	0.741294	
mm_70179.1	chr7	143740242	143740442	-	1	NA	NA	NA	18	NM_001199227	79196	Mm.21199	NM_024289	ENSMUSG00000037606	Osbpl5	1110006M06Rik|AI462538|ORP5|Obph1|Osbp2	oxysterol binding protein-like 5	protein-coding	0.090000	0.716418	
mm_128736.1	chr15	64303085	64303285	-	1	NA	NA	NA	9488	NM_001276462	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.005000	0.417910	
mm_103212.1	chr11	70653902	70654102	-	1	NA	NA	NA	648	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.105000	0.716418	
mm_84471.1	chr9	66782181	66782381	-	1	NA	NA	NA	13142	NM_177583	208117	Mm.41291	NM_177583	ENSMUSG00000032375	Aph1b	2310057K14Rik|Aph1c	aph1 homolog B, gamma secretase subunit	protein-coding	0.000000	0.318408	
mm_41831.1	chr5	104170588	104170788	+	1	NA	NA	NA	-15	NM_010080	666279	Mm.319832	NM_010080	ENSMUSG00000053268	Dspp	Dmp2|Dmp3|Dpp|Dsp	dentin sialophosphoprotein	protein-coding	0.010000	0.437811	
mm_165305.1	chr2	98474829	98475029	+	1	NA	NA	NA	1007272	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.010000	0.348259	-83(GTCTAGAAAGGG,-,0.00)
mm_48782.1	chr5	148552553	148552753	-	1	NA	NA	NA	135	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.110000	0.736318	
mm_68689.1	chr7	119476715	119476915	-	1	NA	NA	NA	2447	NM_009470	22242	Mm.10826	NM_009470	ENSMUSG00000030963	Umod	THP|Urehd1|urehr4	uromodulin	protein-coding	0.055000	0.597015	
mm_126343.1	chr15	79900280	79900480	+	1	NA	NA	NA	5357	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.015000	0.611940	
mm_62274.1	chr7	99579536	99579736	+	1	NA	NA	NA	27367	NR_029760	723840		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	0.030000	0.542289	
mm_38105.1	chr4	134517483	134517683	-	1	NA	NA	NA	6584	NM_001081099	69885	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	0.040000	0.592040	
mm_24887.1	chr3	96108426	96108626	+	1	NA	NA	NA	3999	NM_001025614	229603	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0.010000	0.502488	
mm_23075.1	chr3	36467668	36467868	+	1	NA	NA	NA	7756	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.010000	0.477612	
mm_123312.1	chr14	62411715	62411915	-	1	NA	NA	NA	44474	NM_001204340	239134	Mm.236557	NM_172810	ENSMUSG00000021933	Gucy1b2	B930025B03|GC-SB2	guanylate cyclase 1, soluble, beta 2	protein-coding	0.015000	0.522388	
mm_172347.1	chr7	113484587	113484787	-	1	NA	NA	NA	-29147	NM_001285831	67420	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.015000	0.452736	
mm_144589.1	chr18	32067893	32068093	+	1	NA	NA	NA	259	NM_173441	73473	Mm.66853	NM_173441	ENSMUSG00000024384	Iws1	1700069O15Rik|3000008H23|AL117927|AW214353	IWS1, SUPT6 interacting protein	protein-coding	0.140000	0.731343	
mm_73878.1	chr8	119344378	119344578	+	1	NA	NA	NA	-60	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.100000	0.611940	
mm_160381.1	chr8	43528035	43528235	-	1	NA	NA	NA	2	NM_001009547	382007	Mm.55952	NM_001009547	ENSMUSG00000063900	Adam26b	-	a disintegrin and metallopeptidase domain 26B	protein-coding	0.000000	0.407960	
mm_69220.1	chr7	127588106	127588306	-	1	NA	NA	NA	389	NM_001033040	233899	Mm.25220	NM_001033040	ENSMUSG00000057176	Ccdc189	Gm166	coiled-coil domain containing 189	protein-coding	0.040000	0.577114	
mm_127593.1	chr15	102392709	102392909	+	1	NA	NA	NA	-13507	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.005000	0.492537	
mm_106213.1	chr11	116852130	116852330	-	1	NA	NA	NA	864	NM_011358	20382	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0.125000	0.661692	
mm_94846.1	chr11	23769699	23769899	+	1	NA	NA	NA	1171	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.015000	0.457711	
mm_92933.1	chr10	84527612	84527812	-	1	NA	NA	NA	6176	NM_175451	216197	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.015000	0.582090	
mm_139185.1	chr17	47594537	47594737	+	1	NA	NA	NA	1170	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.040000	0.557214	
mm_49750.1	chr6	34746281	34746481	+	1	NA	NA	NA	-34051	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.035000	0.616915	
mm_10761.1	chr2	24186218	24186418	+	1	NA	NA	NA	-158	NM_153511	215257	Mm.249379	NM_153511	ENSMUSG00000044103	Il1f9	Il36g	interleukin 1 family, member 9	protein-coding	0.000000	0.477612	
mm_145582.1	chr18	60984221	60984421	+	1	NA	NA	NA	20767	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.035000	0.656716	
mm_62137.1	chr7	97090506	97090706	+	1	NA	NA	NA	8855	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.005000	0.288557	
mm_3050.1	chr1	134040835	134041035	+	1	NA	NA	NA	3420	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.030000	0.557214	
mm_96219.1	chr11	62508996	62509196	+	1	NA	NA	NA	30165	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.010000	0.407960	
mm_104333.1	chr11	93996678	93996878	-	1	NA	NA	NA	687	NM_027569	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.055000	0.671642	
mm_76229.1	chr8	83573147	83573347	-	1	NA	NA	NA	6489	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.020000	0.567164	
mm_162837.1	chr10	84517679	84517879	+	1	NA	NA	NA	16109	NM_175451	216197	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.010000	0.492537	
mm_55180.1	chr6	52158208	52158408	-	1	NA	NA	NA	9	NM_010449	15394	Mm.197	NM_010449	ENSMUSG00000029844	Hoxa1	ERA1|Hox-1.6	homeobox A1	protein-coding	0.050000	0.562189	
mm_24525.1	chr3	93188491	93188691	+	1	NA	NA	NA	-8682	NM_001013804	229574	Mm.10755	NM_001013804		Flg2	EG229574	filaggrin family member 2	protein-coding	0.005000	0.472637	
mm_18305.1	chr2	53190729	53190929	-	1	NA	NA	NA	358	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.020000	0.562189	
mm_66749.1	chr7	46712095	46712295	-	1	NA	NA	NA	-1544	NM_030233	78935	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.020000	0.502488	
mm_142547.1	chr17	46586985	46587185	-	1	NA	NA	NA	-30923	NM_020493	20807	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0.005000	0.383085	
mm_87276.1	chr10	41887378	41887578	+	1	NA	NA	NA	39	NM_001013370	140742	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.150000	0.741294	
mm_50289.1	chr6	47454282	47454482	+	1	NA	NA	NA	58	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.160000	0.805970	
mm_49629.1	chr6	30804722	30804922	+	1	NA	NA	NA	63523	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.005000	0.567164	
mm_172993.1	chrM	13888	14088	-	1	NA	NA	NA	NA	NA									0.005000	0.293532	-9(CTATTTATGGAG,+,0.00)
mm_102169.1	chr11	53891547	53891747	-	1	NA	NA	NA	56	NM_011396	20520	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0.105000	0.716418	
mm_4464.1	chr1	173333468	173333668	+	1	NA	NA	NA	-65	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	0.010000	0.487562	
mm_65048.1	chr7	18646927	18647127	-	1	NA	NA	NA	9698	NM_027403	72242	Mm.326858	NM_027403	ENSMUSG00000070796	Psg21	1600019C01Rik|1600025N01Rik|1600026N13Rik|cea8	pregnancy-specific glycoprotein 21	protein-coding	0.000000	0.467662	
mm_34608.1	chr4	150279124	150279324	+	1	NA	NA	NA	-2692	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.000000	0.194030	
mm_68767.1	chr7	121946263	121946463	-	1	NA	NA	NA	35330	NM_001033318	233824	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0.010000	0.582090	
mm_121192.1	chr14	103050942	103051142	+	1	NA	NA	NA	4030	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.000000	0.388060	-92(CTTTTTAAATTC,+,0.00)
mm_115935.1	chr13	23621810	23622010	-	1	NA	NA	NA	648	NM_015787	50709	Mm.170587	NM_015787	ENSMUSG00000051627	Hist1h1e	H1-4|H1.4|H1e|H1f4|H1s-4|H1var2	histone cluster 1, H1e	protein-coding	0.030000	0.497512	
mm_15443.1	chr2	157367058	157367258	+	1	NA	NA	NA	-436	NM_026968	69161	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	0.015000	0.422886	
mm_104883.1	chr11	99521505	99521705	-	1	NA	NA	NA	-347	NM_213730	237934	Mm.484091	NM_213730	ENSMUSG00000064165	Krt39	4732494G06Rik|Ka35	keratin 39	protein-coding	0.040000	0.477612	
mm_166200.1	chr5	37983614	37983814	+	1	NA	NA	NA	-55516	NM_001289536	71116	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0.005000	0.467662	
mm_13289.1	chr2	101678336	101678536	+	1	NA	NA	NA	16	NM_001303273	22034	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	0.120000	0.746269	
mm_151027.1	chr19	46987841	46988041	+	1	NA	NA	NA	-18374	NM_001164365	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.015000	0.512438	
mm_120000.1	chr14	55618032	55618232	+	1	NA	NA	NA	-34	NM_020002	56739	Mm.23149	NM_020002	ENSMUSG00000002324	Rec8	Rec8L1|mrec	REC8 meiotic recombination protein	protein-coding	0.070000	0.626866	
mm_135716.1	chr16	55812142	55812342	-	1	NA	NA	NA	9896	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.005000	0.393035	83(CCTTTTAAAATG,+,0.00)
mm_119226.1	chr14	33250356	33250556	+	1	NA	NA	NA	33633	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.045000	0.512438	22(GCTTTAATGGTC,+,0.00)
mm_19032.1	chr2	76969615	76969815	-	1	NA	NA	NA	12832	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.055000	0.597015	
mm_60799.1	chr7	45621715	45621915	+	1	NA	NA	NA	4	NM_001018013	73456	Mm.380445	NM_001018013	ENSMUSG00000064158	Izumo1	1700058F15Rik|Izumo	izumo sperm-egg fusion 1	protein-coding	0.030000	0.457711	
mm_75148.1	chr8	35826360	35826560	-	1	NA	NA	NA	99	NM_027998	71908	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	0.095000	0.661692	
mm_67968.1	chr7	100608149	100608349	-	1	NA	NA	NA	-253	NR_003559	52443	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e	mitochondrial ribosomal protein L48	protein-coding	0.105000	0.696517	
mm_908.1	chr1	54250729	54250929	+	1	NA	NA	NA	146	NM_030025	78016	Mm.67455	NM_030025	ENSMUSG00000025983	Ccdc150	4930511H11Rik	coiled-coil domain containing 150	protein-coding	0.055000	0.597015	
mm_21076.1	chr2	152830548	152830748	-	1	NA	NA	NA	69	NM_001289716	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.055000	0.641791	
mm_18535.1	chr2	64097828	64098028	-	1	NA	NA	NA	110	NM_001267846	60344	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.040000	0.487562	
mm_147405.1	chr18	44652067	44652267	-	1	NA	NA	NA	-9498	NR_026853	626275	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	0.015000	0.378109	
mm_96294.1	chr11	63132972	63133172	+	1	NA	NA	NA	269	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.070000	0.681592	
mm_55583.1	chr6	71399243	71399443	-	1	NA	NA	NA	25916	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.005000	0.427861	-11(GTTTTTAAAGCA,+,0.00)
mm_99158.1	chr11	100619645	100619845	+	1	NA	NA	NA	423	NM_019795	56354	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0.110000	0.701493	
mm_11572.1	chr2	32912398	32912598	+	1	NA	NA	NA	36364	NM_146119	227737	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.045000	0.542289	
mm_126112.1	chr15	78254779	78254979	+	1	NA	NA	NA	10068	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.070000	0.606965	
mm_112744.1	chr13	19340463	19340663	+	1	NA	NA	NA	55250	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.502488	
mm_36091.1	chr4	58483532	58483732	-	1	NA	NA	NA	15771	NM_001290486	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.035000	0.452736	
mm_96761.1	chr11	69914151	69914351	+	1	NA	NA	NA	59	NM_019726	56310	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953	G protein pathway suppressor 2	protein-coding	0.095000	0.681592	
mm_76749.1	chr8	95434549	95434749	-	1	NA	NA	NA	220	NM_008187	14894	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.130000	0.691542	
mm_74722.1	chr8	17459433	17459633	-	1	NA	NA	NA	75852	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.005000	0.378109	
mm_115000.1	chr13	98263041	98263241	+	1	NA	NA	NA	65	NM_001271388	68558	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	0.090000	0.641791	
mm_161812.1	chr17	63938048	63938248	+	1	NA	NA	NA	176	NM_008000	14158	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.030000	0.577114	
mm_50595.1	chr6	49071163	49071363	+	1	NA	NA	NA	-2532	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.000000	0.417910	
mm_162770.1	chr10	67548916	67549116	-	1	NA	NA	NA	-61	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.175000	0.761194	
mm_130754.1	chr15	101270415	101270615	-	1	NA	NA	NA	3669	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.040000	0.611940	
mm_118537.1	chr14	16253781	16253981	+	1	NA	NA	NA	-4073	NM_027695	71147	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	0.005000	0.532338	
mm_126760.1	chr15	85832235	85832435	+	1	NA	NA	NA	31	NM_001033337	239570	Mm.151748	NM_001033337	ENSMUSG00000035944	Ttc38	9030019H09	tetratricopeptide repeat domain 38	protein-coding	0.075000	0.597015	
mm_68048.1	chr7	101538158	101538358	-	1	NA	NA	NA	17544	NM_007490	11871	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0.030000	0.482587	42(TCCCTTAAAAAC,-,0.00),44(CCTTAAAAACAC,+,0.00)
mm_43890.1	chr5	143932968	143933168	+	1	NA	NA	NA	23067	NM_008886	18861	Mm.2950	NM_008886	ENSMUSG00000075569	Pms2	AW555130|Pmsl2	postmeiotic segregation increased 2 (S. cerevisiae)	protein-coding	0.025000	0.527363	-68(GCCCCTTTAAGA,-,0.00),-66(CCCTTTAAGAGG,-,0.00),-65(CCTTTAAGAGGA,+,0.00)
mm_64341.1	chr7	142377011	142377211	+	1	NA	NA	NA	-3365	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.005000	0.552239	
mm_173342.1	chrY	90812164	90812364	+	1	NA	NA	NA	26822	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.030000	0.502488	
mm_62001.1	chr7	91176820	91177020	+	1	NA	NA	NA	86134	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.005000	0.308458	
mm_88461.1	chr10	77560980	77561180	+	1	NA	NA	NA	-20687	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.020000	0.522388	
mm_35416.1	chr4	35019921	35020121	-	1	NA	NA	NA	-108540	NR_040652	73696	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0.000000	0.472637	38(CTGTCTAAAGGC,-,0.00)
mm_44260.1	chr5	5514747	5514947	-	1	NA	NA	NA	2	NM_001193661	64945	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding	0.085000	0.676617	
mm_118769.1	chr14	22616286	22616486	+	1	NA	NA	NA	-73588	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.000000	0.378109	
mm_10277.1	chr2	9884366	9884566	+	1	NA	NA	NA	3220	NR_024257	381347	Mm.441450	NR_024257		4930412O13Rik	ENSMUSG00000075535|Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.035000	0.492537	-89(TTTTTTAAAGGG,+,0.00)
mm_37489.1	chr4	123613626	123613826	-	1	NA	NA	NA	-2694	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.030000	0.522388	
mm_106555.1	chr11	120617814	120618014	-	1	NA	NA	NA	-24	NM_024229	68671	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	0.120000	0.746269	
mm_29758.1	chr3	127162127	127162327	-	1	NA	NA	NA	922	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.030000	0.582090	
mm_108767.1	chr12	89601893	89602093	+	1	NA	NA	NA	-210490	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.005000	0.283582	
mm_34037.1	chr4	138172886	138173086	+	1	NA	NA	NA	9777	NR_105825	102466907		NR_105825	ENSMUSG00000098513	Mir6399	Gm27667|mir-6399|mmu-mir-6399	microRNA 6399	ncRNA	0.020000	0.462687	
mm_24662.1	chr3	94484289	94484489	+	1	NA	NA	NA	1667	NR_110353	78784	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.020000	0.582090	
mm_78233.1	chr9	21616058	21616258	+	1	NA	NA	NA	-11	NM_011417	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.145000	0.761194	
mm_88994.1	chr10	81574619	81574819	+	1	NA	NA	NA	-568	NM_019725	21886	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0.010000	0.532338	
mm_44373.1	chr5	17814127	17814327	-	1	NA	NA	NA	21669	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.348259	
mm_160719.1	chr10	63382318	63382518	+	1	NA	NA	NA	-25	NM_001253685	30045	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.070000	0.527363	32(GAATCTTAAAGG,-,0.00)
mm_86470.1	chr10	4611718	4611918	+	1	NA	NA	NA	-171	NM_001302532	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.015000	0.442786	
mm_171657.1	chr4	43000300	43000500	-	1	NA	NA	NA	107	NM_009503	269523	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	0.095000	0.641791	
mm_130679.1	chr15	100677989	100678189	-	1	NA	NA	NA	-8589	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.000000	0.522388	
mm_67835.1	chr7	98361297	98361497	-	1	NA	NA	NA	-69	NM_001168539	244152	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.110000	0.721393	
mm_150417.1	chr19	37212344	37212544	+	1	NA	NA	NA	4899	NM_001164336	69104	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	0.010000	0.477612	
mm_21170.1	chr2	154657946	154658146	-	1	NA	NA	NA	1020	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.025000	0.507463	
mm_122070.1	chr14	30595618	30595818	-	1	NA	NA	NA	14592	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.015000	0.517413	
mm_62587.1	chr7	105596192	105596392	+	1	NA	NA	NA	3824	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.025000	0.522388	
mm_8193.1	chr1	138107736	138107936	-	1	NA	NA	NA	67290	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.378109	
mm_58658.1	chr7	6415116	6415316	+	1	NA	NA	NA	41	NM_001134752	100042450	Mm.416919	NM_001134752	ENSMUSG00000093536	Smim17	Gm16532	small integral membrane protein 17	protein-coding	0.055000	0.691542	
mm_69729.1	chr7	140822059	140822259	-	1	NA	NA	NA	19	NM_001001180	407812	Mm.359154	NM_001001180	ENSMUSG00000060314	Zfp941	-	zinc finger protein 941	protein-coding	0.045000	0.567164	
mm_124932.1	chr15	12204994	12205194	+	1	NA	NA	NA	0	NM_172958	268783	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.160000	0.776119	
mm_111033.1	chr12	79185622	79185822	-	1	NA	NA	NA	6097	NM_021557	17252	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c	retinol dehydrogenase 11	protein-coding	0.015000	0.427861	
mm_78581.1	chr9	37208226	37208426	+	1	NA	NA	NA	10	NM_001310096	66279	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	0.050000	0.577114	
mm_59607.1	chr7	28142166	28142366	+	1	NA	NA	NA	12800	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.562189	-19(CCCTTTCAAGCC,+,0.00)
mm_9810.1	chr1	181956440	181956640	-	1	NA	NA	NA	63440	NM_008680	13800	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	enabled homolog (Drosophila)	protein-coding	0.005000	0.398010	-60(GGCTTTATAATG,-,0.00)
mm_158721.1	chrX	162888318	162888518	-	1	NA	NA	NA	44	NM_025932	67043	Mm.44207	NM_025932	ENSMUSG00000031357	Syap1	2010110O17Rik|AW011796	synapse associated protein 1	protein-coding	0.085000	0.691542	
mm_72754.1	chr8	85299810	85300010	+	1	NA	NA	NA	278	NR_028268	56452	Mm.29709	NM_019716	ENSMUSG00000031697	Orc6	6720420I10Rik|Orc6l	origin recognition complex, subunit 6	protein-coding	0.105000	0.626866	
mm_18945.1	chr2	76768884	76769084	-	1	NA	NA	NA	93669	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.020000	0.457711	
mm_112736.1	chr13	19256896	19257096	+	1	NA	NA	NA	138817	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.343284	
mm_129129.1	chr15	76190207	76190407	-	1	NA	NA	NA	5403	NM_201394	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.035000	0.671642	
mm_74573.1	chr8	11201695	11201895	-	1	NA	NA	NA	-111010	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.050000	0.542289	
mm_45964.1	chr5	90465803	90466003	-	1	NA	NA	NA	5033	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.373134	-66(TGCTTTAAAAGC,-,0.00),-65(GCTTTAAAAGCT,+,0.00)
mm_57120.1	chr6	122596770	122596970	-	1	NA	NA	NA	5574	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.020000	0.457711	
mm_28315.1	chr3	89270420	89270620	-	1	NA	NA	NA	50	NM_009057	19729	Mm.17958	NM_009057	ENSMUSG00000027953	Slc50a1	MmSWEET1|Rag1ap1|Rga	solute carrier family 50 (sugar transporter), member 1	protein-coding	0.110000	0.691542	
mm_154149.1	chr19	58454401	58454601	-	1	NA	NA	NA	897	NM_001285457	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.090000	0.666667	-77(ACCCCTAAAAGC,-,0.00)
mm_47218.1	chr5	121122078	121122278	-	1	NA	NA	NA	69219	NM_001109992	19247	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0.010000	0.497512	
mm_42136.1	chr5	111287271	111287471	+	1	NA	NA	NA	-43326	NM_001301644	56305	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0.000000	0.248756	-96(GCATTTATAGCC,+,0.00)
mm_9027.1	chr1	166464817	166465017	-	1	NA	NA	NA	32671	NM_001164306	226601	Mm.475593	NM_001164306	ENSMUSG00000086056	Gm4846	EG226601|Fmo13	predicted gene 4846	protein-coding	0.005000	0.512438	
mm_36071.1	chr4	57953427	57953627	-	1	NA	NA	NA	2884	NM_011660	22166	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.005000	0.452736	
mm_124724.1	chr15	6580062	6580262	+	1	NA	NA	NA	315	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.025000	0.522388	28(GTTTTTAAAACC,+,0.00)
mm_123868.1	chr14	72584509	72584709	-	1	NA	NA	NA	125394	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.020000	0.452736	-66(ACTCATAAAAGG,-,0.00)
mm_155099.1	chrX	48274836	48275036	+	1	NA	NA	NA	10490	NR_045916	100500713	Mm.396609	NR_045916	ENSMUSG00000097197	9530027J09Rik	-	RIKEN cDNA 9530027J09 gene	ncRNA	0.025000	0.522388	
mm_3232.1	chr1	135849851	135850051	+	1	NA	NA	NA	9090	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.005000	0.427861	-64(CCCTTTCAAGGC,+,0.00)
mm_30406.1	chr3	152253635	152253835	-	1	NA	NA	NA	12585	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.010000	0.402985	
mm_164038.1	chr14	86749012	86749212	-	1	NA	NA	NA	392002	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding	0.020000	0.492537	
mm_109866.1	chr12	4907475	4907675	-	1	NA	NA	NA	-55	NM_145441	217379	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding	0.190000	0.800995	
mm_50412.1	chr6	48739918	48740118	+	1	NA	NA	NA	971	NM_008376	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.000000	0.343284	
mm_124277.1	chr14	103036973	103037173	-	1	NA	NA	NA	-3270	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.005000	0.398010	
mm_149693.1	chr19	21272186	21272386	+	1	NA	NA	NA	8	NM_009551	22682	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.155000	0.706468	
mm_105136.1	chr11	101459193	101459393	-	1	NA	NA	NA	6906	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.010000	0.582090	
mm_5830.1	chr1	52817359	52817559	-	1	NA	NA	NA	229	NM_008384	16329	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	0.090000	0.661692	
mm_58453.1	chr7	3330460	3330660	+	1	NA	NA	NA	-6025	NM_133189	81904	Mm.214994	NM_133189	ENSMUSG00000069806	Cacng7	-	calcium channel, voltage-dependent, gamma subunit 7	protein-coding	0.015000	0.487562	
mm_89562.1	chr10	95411669	95411869	+	1	NA	NA	NA	3514	NM_001168657	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.005000	0.368159	
mm_148535.1	chr19	4594310	4594510	+	1	NA	NA	NA	91	NM_008797	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.010000	0.507463	
mm_125507.1	chr15	55557318	55557518	+	1	NA	NA	NA	10	NM_001168250	105837	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0.095000	0.616915	
mm_3963.1	chr1	164151479	164151679	+	1	NA	NA	NA	-256	NM_007976	14067	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	0.020000	0.557214	
mm_134197.1	chr16	11005990	11006190	-	1	NA	NA	NA	-2808	NR_040518	100043147	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.000000	0.507463	-52(TCATATATAAGC,-,0.00)
mm_89047.1	chr10	82860420	82860620	+	1	NA	NA	NA	179	NM_001042514	50493	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	0.125000	0.741294	
mm_39934.1	chr5	31697959	31698159	+	1	NA	NA	NA	9	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.120000	0.666667	
mm_44917.1	chr5	35728912	35729112	-	1	NA	NA	NA	264	NM_194344	231147	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.025000	0.616915	
mm_145285.1	chr18	53213791	53213991	+	1	NA	NA	NA	-31771	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.005000	0.552239	
mm_13780.1	chr2	118779596	118779796	+	1	NA	NA	NA	-23	NM_170593	214240	Mm.221499	NM_170593	ENSMUSG00000040035	Disp2	AI840597|B230210L08Rik|DispB|mKIAA1742	dispatched RND tramsporter family member 2	protein-coding	0.085000	0.686567	
mm_109622.1	chr12	112764972	112765172	+	1	NA	NA	NA	4417	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.020000	0.557214	
mm_85779.1	chr9	109058299	109058499	-	1	NA	NA	NA	852	NM_001012236	22040	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	0.020000	0.557214	-52(TGCCCTAAAGGC,-,0.00)
mm_56139.1	chr6	87744942	87745142	-	1	NA	NA	NA	14173	NM_001159697	58229	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.015000	0.383085	
mm_119269.1	chr14	34085891	34086091	+	1	NA	NA	NA	12	NM_013473	11752	Mm.3267	NM_013473	ENSMUSG00000021950	Anxa8	AI466995|Anx8	annexin A8	protein-coding	0.010000	0.587065	
mm_25245.1	chr3	103967859	103968059	+	1	NA	NA	NA	-151	NM_001163467	18685	Mm.385178	NM_013629	ENSMUSG00000058388	Phtf1	AU041898|AW049785|Phft|Phtf	putative homeodomain transcription factor 1	protein-coding	0.040000	0.552239	
mm_167836.1	chr9	124424467	124424667	-	1	NA	NA	NA	780	NR_015516	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.100000	0.601990	
mm_112611.1	chr13	15463121	15463321	+	1	NA	NA	NA	-502	NM_008130	14634	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0.120000	0.781095	
mm_151860.1	chr19	5797132	5797332	-	1	NA	NA	NA	-1251	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.010000	0.402985	
mm_129056.1	chr15	75566754	75566954	-	1	NA	NA	NA	2	NM_001135688	23934	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	0.155000	0.766169	
mm_137983.1	chr17	33594445	33594645	+	1	NA	NA	NA	-34547	NR_034153	328801	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	0.015000	0.542289	
mm_29799.1	chr3	127780132	127780332	-	1	NA	NA	NA	295	NM_027808	71481	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	0.040000	0.467662	
mm_114437.1	chr13	65897064	65897264	+	1	NA	NA	NA	-216289	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.015000	0.537313	
mm_41376.1	chr5	90719086	90719286	+	1	NA	NA	NA	-40112	NM_009141	20311	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0.005000	0.432836	56(TCCCTGAAAAGG,-,0.00)
mm_161936.1	chr19	3323188	3323388	+	1	NA	NA	NA	-13	NM_013495	12894	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0.130000	0.736318	
mm_89924.1	chr10	111229301	111229501	+	1	NA	NA	NA	64599	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.000000	0.393035	
mm_155596.1	chrX	82310868	82311068	+	1	NA	NA	NA	-637902	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.020000	0.542289	
mm_71737.1	chr8	62024952	62025152	+	1	NA	NA	NA	96965	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.005000	0.313433	
mm_14141.1	chr2	126499886	126500086	+	1	NA	NA	NA	-8433	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	0.010000	0.557214	
mm_166614.1	chr6	71360857	71361057	+	1	NA	NA	NA	-12470	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.010000	0.522388	
mm_55705.1	chr6	72957984	72958184	-	1	NA	NA	NA	148	NM_001039392	19240	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.075000	0.616915	
mm_84790.1	chr9	77045635	77045835	-	1	NA	NA	NA	46	NR_136923	26944	Mm.23199	NM_012033	ENSMUSG00000032357	Tinag	AI452335|TIN-ag	tubulointerstitial nephritis antigen	protein-coding	0.010000	0.422886	
mm_156975.1	chrX	6320622	6320822	-	1	NA	NA	NA	2	NM_009757	12155	Mm.42160	NM_009757	ENSMUSG00000023279	Bmp15	AU015375|AU018861|AU021453|Bmp-15|C86824|C87336|GDF-9B	bone morphogenetic protein 15	protein-coding	0.005000	0.492537	-59(CCCTTTAAGGCC,+,0.00)
mm_116610.1	chr13	48863567	48863767	-	1	NA	NA	NA	7218	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.035000	0.537313	
mm_103994.1	chr11	84860516	84860716	-	1	NA	NA	NA	-9389	NR_131201	102635561	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	0.020000	0.427861	
mm_81746.1	chr9	113930928	113931128	+	1	NA	NA	NA	94	NM_013699	22221	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0.145000	0.766169	
mm_137514.1	chr17	27057331	27057531	+	1	NA	NA	NA	127	NM_080553	16440	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0.135000	0.766169	
mm_32823.1	chr4	117550268	117550468	+	1	NA	NA	NA	3	NM_080469	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.090000	0.691542	
mm_94875.1	chr11	24102489	24102689	+	1	NA	NA	NA	21894	NM_001159290	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.005000	0.482587	
mm_161609.1	chr16	44867013	44867213	+	1	NA	NA	NA	16	NM_206535	271375	Mm.441535	NM_206535	ENSMUSG00000090176	Cd200r2	AY230198|Cd200r1l	Cd200 receptor 2	protein-coding	0.010000	0.427861	41(GCATTTATGGAC,+,0.00)
mm_108613.1	chr12	85486181	85486381	+	1	NA	NA	NA	12380	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.085000	0.681592	
mm_37426.1	chr4	122885935	122886135	-	1	NA	NA	NA	22	NM_007598	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.075000	0.631841	
mm_103498.1	chr11	76571512	76571712	-	1	NA	NA	NA	-228	NM_198895	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.060000	0.641791	
mm_112541.1	chr13	11345501	11345701	+	1	NA	NA	NA	-176451	NR_027813	664793	Mm.410565	NR_027813		Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo	0.000000	0.358209	
mm_76159.1	chr8	82367628	82367828	-	1	NA	NA	NA	34858	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.000000	0.407960	
mm_108532.1	chr12	84206874	84207074	+	1	NA	NA	NA	11907	NM_001163501	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.030000	0.472637	
mm_6504.1	chr1	74303858	74304058	-	1	NA	NA	NA	378	NM_027154	69660	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.120000	0.676617	
mm_93519.1	chr10	115287990	115288190	-	1	NA	NA	NA	27501	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.005000	0.283582	
mm_164203.1	chr15	80742924	80743124	-	1	NA	NA	NA	31711	NM_144812	213988	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.015000	0.502488	
mm_59951.1	chr7	30426019	30426219	+	1	NA	NA	NA	2815	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.025000	0.597015	
mm_156091.1	chrX	111110318	111110518	+	1	NA	NA	NA	0	NM_026134	67407	Mm.426142	NM_026134	ENSMUSG00000073001	Cylc1	4930401M13Rik	cylicin, basic protein of sperm head cytoskeleton 1	protein-coding	0.000000	0.343284	
mm_162852.1	chr10	88459530	88459730	+	1	NA	NA	NA	43	NM_011517	20962	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	0.060000	0.606965	
mm_94443.1	chr11	6334350	6334550	+	1	NA	NA	NA	41892	NM_001252288	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.010000	0.383085	
mm_129107.1	chr15	76050686	76050886	-	1	NA	NA	NA	14102	NR_105917	102466772		NR_105917	ENSMUSG00000098451	Mir6952	Gm27948|mmu-mir-6952	microRNA 6952	ncRNA	0.010000	0.572139	
mm_39361.1	chr5	9113173	9113373	+	1	NA	NA	NA	12536	NM_001081029	652925	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.000000	0.432836	
mm_132163.1	chr16	32271398	32271598	+	1	NA	NA	NA	-111	NM_183283	69576	Mm.432545	NM_183283	ENSMUSG00000046345	Smco1	2310010M20Rik	single-pass membrane protein with coiled-coil domains 1	protein-coding	0.035000	0.497512	-53(GGCTATTAAAAG,-,0.00)
mm_158546.1	chrX	145480569	145480769	-	1	NA	NA	NA	6970	NM_001290274	27494	Mm.100068	NM_153319	ENSMUSG00000041688	Amot	CAG-2|D0Kist1|Sii6	angiomotin	protein-coding	0.015000	0.398010	
mm_146576.1	chr18	7296968	7297168	-	1	NA	NA	NA	833	NM_001081393	74934	Mm.107918	NM_001081393	ENSMUSG00000061802	Armc4	4930463I21Rik|b2b227.1Clo|b2b643Clo	armadillo repeat containing 4	protein-coding	0.020000	0.442786	
mm_61110.1	chr7	52887501	52887701	+	1	NA	NA	NA	-871885	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	0.000000	0.442786	
mm_134539.1	chr16	19706246	19706446	-	1	NA	NA	NA	19	NM_177356	239739	Mm.258059	NM_177356	ENSMUSG00000041247	Lamp3	1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403	lysosomal-associated membrane protein 3	protein-coding	0.000000	0.462687	
mm_26321.1	chr3	142522168	142522368	+	1	NA	NA	NA	-8068	NM_001083312	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.025000	0.502488	
mm_18374.1	chr2	59952761	59952961	-	1	NA	NA	NA	-70255	NM_028118	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.020000	0.447761	
mm_144385.1	chr18	20667304	20667504	+	1	NA	NA	NA	2154	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.010000	0.492537	
mm_104285.1	chr11	90002790	90002990	-	1	NA	NA	NA	4	NM_008796	18559	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	0.075000	0.666667	
mm_12298.1	chr2	69092550	69092750	+	1	NA	NA	NA	-43150	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.020000	0.378109	47(GTATTTTAAAGC,-,0.00),86(ATCTATTAAAGA,-,0.00)
mm_81149.1	chr9	106892019	106892219	+	1	NA	NA	NA	-181	NM_029103	74840	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	0.045000	0.621891	
mm_127100.1	chr15	97791216	97791416	+	1	NA	NA	NA	6951	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.035000	0.547264	
mm_21802.1	chr2	164911472	164911672	-	1	NA	NA	NA	178	NM_199027	329559	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0.115000	0.691542	
mm_37683.1	chr4	129223046	129223246	-	1	NA	NA	NA	4765	NM_001285866	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.015000	0.572139	
mm_92015.1	chr10	62342596	62342796	-	1	NA	NA	NA	2089	NR_038038	70162	Mm.441212	NR_038038		Hk1os	2210417K05Rik	hexokinase 1, opposite strand	ncRNA	0.020000	0.597015	-47(GCTTATCTGGCC,+,0.00)
mm_59373.1	chr7	25704721	25704921	+	1	NA	NA	NA	14232	NM_028771	52132	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.060000	0.636816	
mm_115797.1	chr13	19345110	19345310	-	1	NA	NA	NA	50603	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.358209	
mm_110046.1	chr12	17507121	17507321	-	1	NA	NA	NA	-37652	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.020000	0.502488	
mm_90103.1	chr10	116986529	116986729	+	1	NA	NA	NA	315	NM_001007583	382427	Mm.339322	NM_001007583	ENSMUSG00000020169	Best3	Vmd2l3|mBest4	bestrophin 3	protein-coding	0.010000	0.492537	
mm_1036.1	chr1	58756273	58756473	+	1	NA	NA	NA	25821	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.005000	0.407960	
mm_74344.1	chr8	127268882	127269082	+	1	NA	NA	NA	-30630	NM_001013581	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.005000	0.348259	
mm_51002.1	chr6	63599321	63599521	+	1	NA	NA	NA	342564	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.015000	0.368159	
mm_56747.1	chr6	115967386	115967586	-	1	NA	NA	NA	22555	NM_138311	171506	Mm.21899	NM_138311	ENSMUSG00000042279	H1foo	C86609|H1.8|H1fo|H1oo	H1 histone family, member O, oocyte-specific	protein-coding	0.030000	0.616915	
mm_20699.1	chr2	132945420	132945620	-	1	NA	NA	NA	516	NM_198029	241639	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0.075000	0.681592	
mm_156886.1	chrX	166357556	166357756	+	1	NA	NA	NA	13103	NM_001177960	14758	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	0.005000	0.422886	
mm_90042.1	chr10	115817375	115817575	+	1	NA	NA	NA	191	NM_001168679	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	0.025000	0.412935	
mm_80405.1	chr9	77636528	77636728	+	1	NA	NA	NA	-104	NM_172925	244923	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0.015000	0.547264	
mm_155946.1	chrX	104508810	104509010	+	1	NA	NA	NA	26128	NM_001081189	331487	Mm.438275	NM_001081189	ENSMUSG00000073016	Uprt	Gm774	uracil phosphoribosyltransferase	protein-coding	0.005000	0.353234	48(GACTATTAAAAG,-,0.00)
mm_87997.1	chr10	66865184	66865384	+	1	NA	NA	NA	55100	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.020000	0.552239	
mm_16742.1	chr2	9593718	9593918	-	1	NA	NA	NA	284782	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.015000	0.492537	
mm_164492.1	chr16	89488139	89488339	+	1	NA	NA	NA	-287	NM_010675	16703	Mm.13979	NM_010675	ENSMUSG00000059632	Krtap8-1	AI326176	keratin associated protein 8-1	protein-coding	0.010000	0.373134	25(GCTTTAATGCAG,+,0.00)
mm_56092.1	chr6	87350813	87351013	-	1	NA	NA	NA	2	NM_025466	66283	Mm.46414	NM_025466	ENSMUSG00000030050	Gkn1	2200002K21Rik|AMP-18|BRICD1|Fov	gastrokine 1	protein-coding	0.020000	0.512438	
mm_85998.1	chr9	112227111	112227311	-	1	NA	NA	NA	-245	NR_131053	70194	Mm.452769	NR_131053		2310075C17Rik	-	RIKEN cDNA 2310075C17 gene	ncRNA	0.010000	0.512438	
mm_111933.1	chr12	108889208	108889408	-	1	NA	NA	NA	3890	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.005000	0.407960	
mm_171845.1	chr5	16903541	16903741	+	1	NA	NA	NA	349740	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.060000	0.641791	
mm_134671.1	chr16	22265856	22266056	-	1	NA	NA	NA	49	NM_001330554	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding	0.105000	0.656716	
mm_4698.1	chr1	180848221	180848421	+	1	NA	NA	NA	-2830	NM_145943	208768	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.025000	0.492537	
mm_58795.1	chr7	16174995	16175195	+	1	NA	NA	NA	-300	NM_001277988	17537	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0.030000	0.592040	
mm_104212.1	chr11	88341817	88342017	-	1	NA	NA	NA	-10856	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	0.005000	0.323383	
mm_165297.1	chr2	91526737	91526937	+	1	NA	NA	NA	-19485	NM_001165989	75786	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0.110000	0.696517	
mm_116164.1	chr13	30753386	30753586	-	1	NA	NA	NA	4253	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.015000	0.522388	
mm_62671.1	chr7	109010790	109010990	+	1	NA	NA	NA	10	NM_021885	22141	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby candidate gene	protein-coding	0.150000	0.796020	
mm_110074.1	chr12	21417498	21417698	-	1	NA	NA	NA	-162	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.090000	0.641791	
mm_140124.1	chr17	79611748	79611948	+	1	NA	NA	NA	-3052	NM_201361	381110	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.010000	0.407960	
mm_43968.1	chr5	145404871	145405071	+	1	NA	NA	NA	59701	NM_001100180	622127	Mm.359379	NM_001100180	ENSMUSG00000070419	Cyp3a57	EG622127	cytochrome P450, family 3, subfamily a, polypeptide 57	protein-coding	0.015000	0.502488	
mm_21032.1	chr2	152464526	152464726	-	1	NA	NA	NA	-6	NM_001037933	629114	Mm.389372	NM_001037933	ENSMUSG00000074681	Defb23	EG629114	defensin beta 23	protein-coding	0.005000	0.522388	
mm_85376.1	chr9	103225018	103225218	-	1	NA	NA	NA	5168	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.020000	0.507463	
mm_73437.1	chr8	106150376	106150576	+	1	NA	NA	NA	77	NM_133792	192654	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.055000	0.592040	
mm_46342.1	chr5	102018291	102018491	-	1	NA	NA	NA	51530	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.010000	0.437811	
mm_137900.1	chr17	31808365	31808565	+	1	NA	NA	NA	47327	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.020000	0.477612	
mm_105922.1	chr11	115048286	115048486	-	1	NA	NA	NA	-91	NM_199201	382551	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	0.000000	0.452736	
mm_150719.1	chr19	43528229	43528429	+	1	NA	NA	NA	-3724	NM_010324	14718	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.015000	0.442786	
mm_107116.1	chr12	18387391	18387591	+	1	NA	NA	NA	-127019	NM_001033157	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.095000	0.736318	
mm_90423.1	chr10	127487721	127487921	+	1	NA	NA	NA	-13896	NM_177707	237611	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0.010000	0.582090	
mm_17943.1	chr2	36104713	36104913	-	1	NA	NA	NA	595	NM_001083125	16874	Mm.12881	NM_008500	ENSMUSG00000026890	Lhx6	Lhx6.1	LIM homeobox protein 6	protein-coding	0.070000	0.562189	
mm_68746.1	chr7	121064389	121064589	-	1	NA	NA	NA	10041	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.005000	0.502488	
mm_144254.1	chr18	10920979	10921179	+	1	NA	NA	NA	-131431	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.005000	0.457711	
mm_57528.1	chr6	126534916	126535116	-	1	NA	NA	NA	539	NM_145983	16493	Mm.222831	NM_145983	ENSMUSG00000045534	Kcna5	Kv1.5	potassium voltage-gated channel, shaker-related subfamily, member 5	protein-coding	0.035000	0.636816	
mm_119307.1	chr14	34820024	34820224	+	1	NA	NA	NA	-12	NM_008166	14803	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	0.155000	0.840796	
mm_94067.1	chr10	128400417	128400617	-	1	NA	NA	NA	0	NM_028092	72002	Mm.22983	NM_028051	ENSMUSG00000039878	Slc39a5	1810013D05Rik|2010205A06Rik|Zip5	solute carrier family 39 (metal ion transporter), member 5	protein-coding	0.015000	0.567164	
mm_97840.1	chr11	83065112	83065312	+	1	NA	NA	NA	100	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.010000	0.512438	-100(GCTTTAATGCAG,+,0.00)
mm_134199.1	chr16	11065993	11066193	-	1	NA	NA	NA	-205	NM_009223	20621	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0.055000	0.626866	
mm_25845.1	chr3	129221439	129221639	+	1	NA	NA	NA	7607	NM_001287048	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.030000	0.577114	
mm_20452.1	chr2	129364885	129365085	-	1	NA	NA	NA	-4917	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.020000	0.507463	
mm_163174.1	chr11	87795165	87795365	+	1	NA	NA	NA	1481	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.030000	0.597015	
mm_153285.1	chr19	37263987	37264187	-	1	NA	NA	NA	8	NR_040299	77059	Mm.251476	NR_040298		4931408D14Rik	-	RIKEN cDNA 4931408D14 gene	ncRNA	0.025000	0.502488	
mm_95573.1	chr11	52402822	52403022	+	1	NA	NA	NA	6494	NM_153117	213673	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.000000	0.348259	81(CTCTTGTAAAGG,-,0.00)
mm_82438.1	chr9	15279752	15279952	-	1	NA	NA	NA	15	NM_144933	234959	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0.125000	0.676617	
mm_17408.1	chr2	27246694	27246894	-	1	NA	NA	NA	509	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.010000	0.557214	
mm_129596.1	chr15	79834114	79834314	-	1	NA	NA	NA	119	NM_001013360	504193	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	0.120000	0.701493	
mm_86825.1	chr10	21054916	21055116	+	1	NA	NA	NA	14196	NM_001177776	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.025000	0.467662	
mm_78911.1	chr9	44981689	44981889	+	1	NA	NA	NA	3	NM_013487	12500	Mm.4527	NM_013487	ENSMUSG00000032094	Cd3d	T3d	CD3 antigen, delta polypeptide	protein-coding	0.005000	0.492537	
mm_49821.1	chr6	37530091	37530291	+	1	NA	NA	NA	18	NM_145364	208665	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0.010000	0.452736	
mm_15475.1	chr2	157560489	157560689	+	1	NA	NA	NA	511	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.075000	0.492537	74(TCTTTTAAATAC,+,0.00)
mm_164438.1	chr16	48874295	48874495	-	1	NA	NA	NA	1787	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.015000	0.432836	
mm_37147.1	chr4	116994280	116994480	-	1	NA	NA	NA	33	NM_009478	22275	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	0.080000	0.582090	
mm_62070.1	chr7	92698817	92699017	+	1	NA	NA	NA	-29005	NM_029078	74737	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	0.010000	0.517413	
mm_46750.1	chr5	112120801	112121001	-	1	NA	NA	NA	-85862	NR_045377	75569	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	0.010000	0.557214	
mm_145942.1	chr18	67343693	67343893	+	1	NA	NA	NA	229	NM_007702	12683	Mm.449	NM_007702	ENSMUSG00000024526	Cidea	AW212747	cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	protein-coding	0.095000	0.641791	
mm_110809.1	chr12	72219192	72219392	-	1	NA	NA	NA	16454	NR_104446	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.010000	0.507463	
mm_148047.1	chr18	70530220	70530420	-	1	NA	NA	NA	1	NM_001136090	26447	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	0.085000	0.661692	
mm_63958.1	chr7	139937975	139938175	+	1	NA	NA	NA	-5781	NM_009482	22286	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	0.015000	0.567164	
mm_4740.1	chr1	181853672	181853872	+	1	NA	NA	NA	-11371	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.035000	0.552239	
mm_17023.1	chr2	19388816	19389016	-	1	NA	NA	NA	17280	NM_029619	76467	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	0.035000	0.547264	
mm_125387.1	chr15	40735277	40735477	+	1	NA	NA	NA	80335	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding	0.000000	0.373134	
mm_150712.1	chr19	43034851	43035051	+	1	NA	NA	NA	-254975	NM_019424	192236	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	Hermansky-Pudlak syndrome 1	protein-coding	0.010000	0.497512	
mm_23295.1	chr3	52268281	52268481	+	1	NA	NA	NA	44	NM_019739	56458	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.160000	0.736318	
mm_97733.1	chr11	80399531	80399731	+	1	NA	NA	NA	16352	NM_001130171	22680	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0.005000	0.338308	
mm_152121.1	chr19	6987505	6987705	-	1	NA	NA	NA	46	NM_001185164	22340	Mm.15607	NM_011697	ENSMUSG00000024962	Vegfb	VEGF-B|Vrf	vascular endothelial growth factor B	protein-coding	0.130000	0.815920	
mm_141798.1	chr17	34347569	34347769	-	1	NA	NA	NA	-3024	NM_010381	100504404	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	0.005000	0.432836	
mm_20282.1	chr2	126892296	126892496	-	1	NA	NA	NA	9989	NR_106202	102466258		NR_106202	ENSMUSG00000098896	Mir3473g	Gm27751|mmu-mir-3473g	microRNA 3473g	ncRNA	0.015000	0.373134	
mm_130170.1	chr15	93275066	93275266	-	1	NA	NA	NA	13	NM_001346785	223827	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.170000	0.781095	
mm_69196.1	chr7	127345311	127345511	-	1	NA	NA	NA	-97	NM_146202	233890	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0.135000	0.771144	
mm_127115.1	chr15	97969724	97969924	+	1	NA	NA	NA	5595	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.015000	0.482587	
mm_130914.1	chr15	102624880	102625080	-	1	NA	NA	NA	484	NM_001310070	223922	Mm.208714	NM_146065	ENSMUSG00000052414	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	0.025000	0.547264	
mm_168003.1	chrY	903752	903952	+	1	NA	NA	NA	6064	NM_011419	20592	Mm.262676	NM_011419	ENSMUSG00000056673	Kdm5d	HY|Jarid1d|Smcy	lysine (K)-specific demethylase 5D	protein-coding	0.010000	0.318408	-26(GTTTTAATAGCA,+,0.00)
mm_140416.1	chr17	87650473	87650673	+	1	NA	NA	NA	14594	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.045000	0.472637	
mm_8848.1	chr1	162706084	162706284	-	1	NA	NA	NA	34372	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.010000	0.427861	
mm_49163.1	chr6	13838635	13838835	+	1	NA	NA	NA	1207	NM_001330666	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.130000	0.751244	
mm_29484.1	chr3	115714689	115714889	-	1	NA	NA	NA	266	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.090000	0.671642	
mm_39668.1	chr5	25247276	25247476	+	1	NA	NA	NA	24483	NM_144908	231050	Mm.21814	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.005000	0.383085	
mm_146743.1	chr18	15760016	15760216	-	1	NA	NA	NA	-42070	NM_199055	71367	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0.135000	0.716418	
mm_96162.1	chr11	61487858	61488058	+	1	NA	NA	NA	2514	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.035000	0.547264	
mm_22082.1	chr2	168765306	168765506	-	1	NA	NA	NA	1795	NM_201395	99377	Mm.434054	NM_175303	ENSMUSG00000027547	Sall4	5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20	sal-like 4 (Drosophila)	protein-coding	0.030000	0.582090	
mm_72794.1	chr8	86915097	86915297	+	1	NA	NA	NA	-29939	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.020000	0.467662	
mm_131797.1	chr16	22899044	22899244	+	1	NA	NA	NA	-4758	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.015000	0.522388	
mm_88641.1	chr10	79930302	79930502	+	1	NA	NA	NA	3061	NM_001288625	13496	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.010000	0.567164	
mm_48113.1	chr5	137116131	137116331	-	1	NA	NA	NA	-24	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.055000	0.621891	
mm_115729.1	chr13	17742659	17742859	-	1	NA	NA	NA	-4714	NR_035412	100316665		NR_035412	ENSMUSG00000080574	Mir466i	Mirn466i|mmu-mir-466i	microRNA 466i	ncRNA	0.005000	0.333333	
mm_74150.1	chr8	123332656	123332856	+	1	NA	NA	NA	43	NM_172287	234857	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire homolog 2 (Drosophila)	protein-coding	0.180000	0.791045	
mm_108789.1	chr12	90969799	90969999	+	1	NA	NA	NA	-75949	NR_045858	71349	Mm.442093	NR_045858		5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	0.000000	0.472637	18(TACTATAAAGGG,-,0.00)
mm_79162.1	chr9	47813813	47814013	+	1	NA	NA	NA	4295	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.035000	0.497512	
mm_32836.1	chr4	117787196	117787396	+	1	NA	NA	NA	-21630	NM_029416	75753	Mm.3848	NM_029416	ENSMUSG00000048626	Klf17	7420700M05Rik|AA420409|AU043468|C85123|D4Ertd561e|Gzf|Zfp393	Kruppel-like factor 17	protein-coding	0.015000	0.502488	
mm_102829.1	chr11	69098088	69098288	-	1	NA	NA	NA	-768	NM_011065	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.000000	0.522388	
mm_49346.1	chr6	21985885	21986085	+	1	NA	NA	NA	75	NM_001081351	214642	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.085000	0.621891	
mm_127539.1	chr15	102104413	102104613	+	1	NA	NA	NA	1525	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.025000	0.537313	
mm_168690.1	chr11	97062495	97062695	+	1	NA	NA	NA	-1173	NR_106181	102465893		NR_106181	ENSMUSG00000098769	Mir8103	Gm27841|mmu-mir-8103	microRNA 8103	ncRNA	0.005000	0.417910	-50(TTTTTTAAAGTG,+,0.00)
mm_41499.1	chr5	92326671	92326871	+	1	NA	NA	NA	1308	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.020000	0.477612	
mm_21082.1	chr2	152951434	152951634	-	1	NA	NA	NA	48	NM_001159376	252864	Mm.330671	NM_145744	ENSMUSG00000042662	Dusp15	AI851682|LMW-DSP10|T-DSP10	dual specificity phosphatase-like 15	protein-coding	0.090000	0.741294	
mm_99452.1	chr11	102434085	102434285	+	1	NA	NA	NA	3863	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.015000	0.552239	
mm_69980.1	chr7	142380700	142380900	-	1	NA	NA	NA	-7054	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.015000	0.507463	
mm_59973.1	chr7	30458149	30458349	+	1	NA	NA	NA	-734	NM_172898	243911	Mm.113908	NM_172898	ENSMUSG00000036915	Kirrel2	C330019F22Rik|NEPH3|NLG1	kin of IRRE like 2 (Drosophila)	protein-coding	0.010000	0.512438	
mm_4527.1	chr1	175632046	175632246	+	1	NA	NA	NA	-47	NM_133809	98256	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	0.015000	0.447761	
mm_136608.1	chr17	5278405	5278605	+	1	NA	NA	NA	140262	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.030000	0.522388	
mm_144135.1	chr18	4980514	4980714	+	1	NA	NA	NA	-65975	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.025000	0.542289	
mm_117633.1	chr13	92131782	92131982	-	1	NA	NA	NA	-143840	NM_009027	19418	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0.120000	0.656716	-33(CCCTTTAAATCG,+,0.00)
mm_151160.1	chr19	53194214	53194414	+	1	NA	NA	NA	50317	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.015000	0.467662	
mm_57262.1	chr6	123285440	123285640	-	1	NA	NA	NA	4331	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.005000	0.368159	
mm_39354.1	chr5	9100630	9100830	+	1	NA	NA	NA	-7	NM_001081029	652925	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.140000	0.746269	
mm_154314.1	chrM	498	698	+	1	NA	NA	NA	NA	NA									0.020000	0.393035	77(GCCTATATACCG,+,0.00)
mm_24839.1	chr3	95660926	95661126	+	1	NA	NA	NA	2305	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.000000	0.432836	
mm_112937.1	chr13	20986109	20986309	+	1	NA	NA	NA	87090	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.000000	0.447761	
mm_122904.1	chr14	54953270	54953470	-	1	NA	NA	NA	-4228	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.040000	0.562189	
mm_97538.1	chr11	78826497	78826697	+	1	NA	NA	NA	2	NM_001076681	66274	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0.135000	0.771144	
mm_151835.1	chr19	5720204	5720404	-	1	NA	NA	NA	6013	NM_001114595	114601	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0.015000	0.631841	
mm_142421.1	chr17	45568869	45569069	-	1	NA	NA	NA	4292	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.020000	0.502488	
mm_19962.1	chr2	117931143	117931343	-	1	NA	NA	NA	109315	NR_040631	73938	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0.010000	0.472637	
mm_36820.1	chr4	104876335	104876535	-	1	NA	NA	NA	-37	NM_001316667	230558	Mm.197638	NM_146148	ENSMUSG00000035031	C8a	-	complement component 8, alpha polypeptide	protein-coding	0.015000	0.417910	
mm_22241.1	chr2	174472807	174473007	-	1	NA	NA	NA	34	NM_025531	66390	Mm.182294	NM_025531	ENSMUSG00000016257	Slmo2	2310042G06Rik|AA407013|Prelid3b	slowmo homolog 2 (Drosophila)	protein-coding	0.115000	0.711443	
mm_80066.1	chr9	69460045	69460245	+	1	NA	NA	NA	3201	NR_037296	100526560		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0.025000	0.522388	
mm_98187.1	chr11	87793664	87793864	+	1	NA	NA	NA	-20	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.005000	0.532338	
mm_170553.1	chr1	94151402	94151602	+	1	NA	NA	NA	-98949	NM_008798	18566	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0.045000	0.621891	
mm_26644.1	chr3	153849779	153849979	+	1	NA	NA	NA	2545	NR_040373	72317	Mm.440147	NR_040373	ENSMUSG00000086438	Asb17os	2510003D18Rik	ankyrin repeat and SOCS box-containing 17, opposite strand	ncRNA	0.025000	0.522388	
mm_81636.1	chr9	110880201	110880401	+	1	NA	NA	NA	-21	NM_001146060	235633	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0.120000	0.716418	
mm_50605.1	chr6	49367728	49367928	+	1	NA	NA	NA	89	NM_172727	231946	Mm.35199	NM_172727	ENSMUSG00000047115	Fam221a	D330028D13Rik	family with sequence similarity 221, member A	protein-coding	0.080000	0.681592	
mm_148903.1	chr19	6941783	6941983	+	1	NA	NA	NA	22	NM_007522	12015	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.080000	0.696517	
mm_141868.1	chr17	34810593	34810793	-	1	NA	NA	NA	-6267	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.000000	0.567164	
mm_161111.1	chr12	104314620	104314820	+	1	NA	NA	NA	150	NM_001101472	238395	Mm.436975	NM_001101472	ENSMUSG00000079013	Serpina3j	AI506554|EG238395|Gm4931	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3J	protein-coding	0.000000	0.462687	
mm_156582.1	chrX	152027624	152027824	+	1	NA	NA	NA	11296	NM_019710	24061	Mm.482095	NM_019710	ENSMUSG00000041133	Smc1a	5830426I24Rik|SMC-1A|Sb1.8|Smc1|Smc1alpha|Smc1l1|Smcb|mKIAA0178	structural maintenance of chromosomes 1A	protein-coding	0.015000	0.422886	
mm_167156.1	chr7	132088670	132088870	+	1	NA	NA	NA	65971	NM_018867	55987	Mm.471654	NM_018867	ENSMUSG00000030862	Cpxm2	4632435C11Rik|CPX-2|Cpx2	carboxypeptidase X 2 (M14 family)	protein-coding	0.015000	0.497512	
mm_170216.1	chr17	74717699	74717899	+	1	NA	NA	NA	49	NM_152817	74196	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0.055000	0.522388	
mm_49560.1	chr6	30564307	30564507	+	1	NA	NA	NA	-3962	NM_027926	71791	Mm.105759	NM_027926	ENSMUSG00000039070	Cpa4	1110019K20Rik|AV009555	carboxypeptidase A4	protein-coding	0.010000	0.487562	87(CCTTTTCTATCC,+,0.00)
mm_82297.1	chr9	7836868	7837068	-	1	NA	NA	NA	89	NM_007465	11797	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.095000	0.706468	
mm_23467.1	chr3	60475840	60476040	+	1	NA	NA	NA	3110	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.318408	
mm_162360.1	chr1	62931070	62931270	+	1	NA	NA	NA	-136438	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.010000	0.427861	-3(GCATATAAAGTG,+,0.00)
mm_47591.1	chr5	124862082	124862282	-	1	NA	NA	NA	39	NM_144819	215707	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.160000	0.751244	
mm_29673.1	chr3	122801915	122802115	-	1	NA	NA	NA	-35	NR_045168	71647	Mm.449992	NR_045168	ENSMUSG00000106583	4930447N08Rik	-	RIKEN cDNA 4930447N08 gene	ncRNA	0.040000	0.577114	
mm_134250.1	chr16	13668052	13668252	-	1	NA	NA	NA	18	NM_028761	74108	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	0.105000	0.666667	
mm_13989.1	chr2	121793537	121793737	+	1	NA	NA	NA	13420	NM_172673	228564	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|5830442F04|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	0.020000	0.482587	
mm_152664.1	chr19	14494098	14494298	-	1	NA	NA	NA	-55692	NR_003027	19862		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	0.000000	0.303483	
mm_89408.1	chr10	90828812	90829012	+	1	NA	NA	NA	-742	NM_001347054	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.055000	0.661692	
mm_149963.1	chr19	28990387	28990587	+	1	NA	NA	NA	135	NM_025950	67072	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	0.095000	0.741294	
mm_24342.1	chr3	89773502	89773702	+	1	NA	NA	NA	-7	NM_027315	70093	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0.165000	0.840796	
mm_53266.1	chr6	128362889	128363089	+	1	NA	NA	NA	-5	NM_008021	14235	Mm.42148	NM_008021	ENSMUSG00000001517	Foxm1	AA408308|AW554517|BB238854|Fkh16|Foxm1b|HFH-11B|MPHOSPH2|Mpm2|WIN	forkhead box M1	protein-coding	0.155000	0.766169	
mm_15753.1	chr2	164240876	164241076	+	1	NA	NA	NA	-2635	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.527363	
mm_169853.1	chr16	32408324	32408524	+	1	NA	NA	NA	7918	NM_001160402	277203	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0.005000	0.407960	
mm_59268.1	chr7	24899059	24899259	+	1	NA	NA	NA	1648	NM_007655	12518	Mm.1355	NM_007655	ENSMUSG00000003379	Cd79a	Ig-alpha|Iga|Igalpha|Ly-54|Ly54|mb-1	CD79A antigen (immunoglobulin-associated alpha)	protein-coding	0.025000	0.597015	
mm_102210.1	chr11	54850431	54850631	-	1	NA	NA	NA	10060	NM_029327	75530	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	0.010000	0.462687	-90(CACCATATAGGC,-,0.00)
mm_56963.1	chr6	120038451	120038651	-	1	NA	NA	NA	104	NM_001199083	232341	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0.075000	0.646766	
mm_91171.1	chr10	20721208	20721408	-	1	NA	NA	NA	3770	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.015000	0.442786	25(CTTCATAAAAGG,-,0.00)
mm_41446.1	chr5	90905240	90905440	+	1	NA	NA	NA	1441	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.025000	0.338308	
mm_126995.1	chr15	94996785	94996985	+	1	NA	NA	NA	152433	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA	0.020000	0.293532	
mm_136371.1	chr16	92824392	92824592	-	1	NA	NA	NA	1582	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.015000	0.422886	
mm_29497.1	chr3	115974234	115974434	-	1	NA	NA	NA	-5568	NR_130332	100316705		NR_130332	ENSMUSG00000089261	Mir669n	mmu-mir-669n	microRNA 669n	ncRNA	0.010000	0.432836	
mm_165728.1	chr3	105635592	105635792	+	1	NA	NA	NA	51879	NM_017397	53975	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	0.010000	0.412935	
mm_103263.1	chr11	71144672	71144872	-	1	NA	NA	NA	-68	NM_001004142	195046	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	0.005000	0.497512	
mm_71821.1	chr8	68895593	68895793	+	1	NA	NA	NA	15138	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.015000	0.457711	
mm_102090.1	chr11	52282715	52282915	-	1	NA	NA	NA	199	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.080000	0.676617	
mm_113875.1	chr13	48869958	48870158	+	1	NA	NA	NA	827	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.060000	0.671642	
mm_82331.1	chr9	9238857	9239057	-	1	NA	NA	NA	56	NM_027823	71544	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0.130000	0.731343	
mm_67564.1	chr7	81885243	81885443	-	1	NA	NA	NA	22656	NM_001291282	107769	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.015000	0.388060	
mm_20924.1	chr2	150842304	150842504	-	1	NA	NA	NA	55608	NM_153781	110078	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.015000	0.522388	
mm_80929.1	chr9	102505982	102506182	+	1	NA	NA	NA	-56	NM_024291	16716	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	0.125000	0.736318	
mm_109258.1	chr12	109459874	109460074	+	1	NA	NA	NA	6519	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.065000	0.661692	
mm_26520.1	chr3	145924286	145924486	+	1	NA	NA	NA	124	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.100000	0.716418	
mm_10641.1	chr2	20547406	20547606	+	1	NA	NA	NA	27993	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.010000	0.447761	
mm_110595.1	chr12	56534974	56535174	-	1	NA	NA	NA	1834	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.040000	0.497512	
mm_15807.1	chr2	164488015	164488215	+	1	NA	NA	NA	4	NM_001048229	52840	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	0.035000	0.601990	
mm_138324.1	chr17	34850335	34850535	+	1	NA	NA	NA	44	NM_001045864	27632	Mm.653	NM_138580	ENSMUSG00000024369	Nelfe	D17H6S45|NELF-E|RD|Rdbp	negative elongation factor complex member E, Rdbp	protein-coding	0.150000	0.716418	
mm_40462.1	chr5	53629871	53630071	+	1	NA	NA	NA	39485	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.010000	0.363184	
mm_26664.1	chr3	154710991	154711191	+	1	NA	NA	NA	-42	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.005000	0.507463	
mm_27273.1	chr3	40682465	40682665	-	1	NA	NA	NA	-26306	NM_178386	73333	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	0.035000	0.512438	
mm_52802.1	chr6	121341900	121342100	+	1	NA	NA	NA	-1076	NM_001347433	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.010000	0.487562	
mm_20685.1	chr2	132578150	132578350	-	1	NA	NA	NA	-2	NM_028802	74182	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	0.110000	0.726368	
mm_13741.1	chr2	118118582	118118782	+	1	NA	NA	NA	6806	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.020000	0.522388	
mm_114011.1	chr13	52607180	52607380	+	1	NA	NA	NA	10398	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.000000	0.472637	
mm_164242.1	chr15	94715248	94715448	+	1	NA	NA	NA	86163	NM_178789	320709	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0.000000	0.323383	
mm_169918.1	chr16	57391091	57391291	-	1	NA	NA	NA	37914	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.075000	0.537313	-31(AACTTTAAATGG,-,0.00)
mm_47319.1	chr5	122460605	122460805	-	1	NA	NA	NA	38261	NM_019805	56317	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0.020000	0.447761	-27(GCTTAAATGCCC,+,0.00)
mm_139116.1	chr17	47410768	47410968	+	1	NA	NA	NA	3843	NM_001172091	75462	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.025000	0.412935	
mm_69001.1	chr7	126695660	126695860	-	1	NA	NA	NA	23	NM_029420	75764	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	0.050000	0.606965	
mm_12707.1	chr2	76675176	76675376	+	1	NA	NA	NA	-39	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.130000	0.736318	
mm_152572.1	chr19	11590080	11590280	-	1	NA	NA	NA	14624	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.005000	0.482587	
mm_127928.1	chr15	10461894	10462094	-	1	NA	NA	NA	8522	NM_030046	78244	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	0.020000	0.467662	
mm_94126.1	chr10	128672204	128672404	-	1	NA	NA	NA	1614	NM_173733	211389	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	0.010000	0.487562	
mm_137113.1	chr17	22424154	22424354	+	1	NA	NA	NA	52	NM_001331198	74149	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	0.035000	0.512438	
mm_129702.1	chr15	81712465	81712665	-	1	NA	NA	NA	-15278	NM_001164320	214685	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0.005000	0.497512	
mm_120727.1	chr14	73142497	73142697	+	1	NA	NA	NA	87	NM_134083	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.020000	0.467662	
mm_109031.1	chr12	104084126	104084326	+	1	NA	NA	NA	6267	NR_002861	321018	Mm.297023	NR_002861		Serpina4-ps1	KALps|Klst	serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1	pseudo	0.000000	0.462687	
mm_171412.1	chr4	129898855	129899055	+	1	NA	NA	NA	-7271	NR_045190	319894	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	0.035000	0.552239	
mm_88773.1	chr10	80336052	80336252	+	1	NA	NA	NA	6007	NM_139292	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.025000	0.547264	
mm_62625.1	chr7	107567632	107567832	+	1	NA	NA	NA	299	NM_172907	244198	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	0.020000	0.527363	
mm_153775.1	chr19	45749298	45749498	-	1	NA	NA	NA	165	NM_008723	18150	Mm.1406	NM_008723	ENSMUSG00000056209	Npm3	Nub1	nucleoplasmin 3	protein-coding	0.115000	0.716418	
mm_158512.1	chrX	142966686	142966886	-	1	NA	NA	NA	-58	NM_019496	56068	Mm.143724	NM_019496	ENSMUSG00000042225	Ammecr1	6230420G18Rik	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	protein-coding	0.145000	0.771144	
mm_111125.1	chr12	81373193	81373393	-	1	NA	NA	NA	6193	NM_001038995	214321	Mm.444671	NM_001038995	ENSMUSG00000072974	Gm4787	Adam4b|EG214321	predicted gene 4787	protein-coding	0.030000	0.482587	
mm_104981.1	chr11	100258015	100258215	-	1	NA	NA	NA	2914	NM_010663	16667	Mm.14046	NM_010663	ENSMUSG00000035557	Krt17	K17|Krt1-17	keratin 17	protein-coding	0.005000	0.462687	
mm_89107.1	chr10	84608468	84608668	+	1	NA	NA	NA	-13869	NM_027423	70428	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	0.010000	0.462687	-16(CACTTTAAATGC,-,0.00)
mm_30397.1	chr3	152249601	152249801	-	1	NA	NA	NA	16619	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.030000	0.368159	-63(ATGTTTAAAAGC,-,0.00),55(CCTTTAATGAAC,+,0.00)
mm_73621.1	chr8	110266871	110267071	+	1	NA	NA	NA	-6	NM_172916	244653	Mm.444803	NM_172916	ENSMUSG00000059854	Hydin	1700034M11Rik|4930545D19Rik|4932703P14|A830061H17|AC069308.21gm4|hy-3|hy3|hyrh	HYDIN, axonemal central pair apparatus protein	protein-coding	0.055000	0.547264	
mm_87859.1	chr10	61175496	61175696	+	1	NA	NA	NA	334	NM_023064	65971	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.005000	0.592040	
mm_41433.1	chr5	90903972	90904172	+	1	NA	NA	NA	173	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.020000	0.606965	
mm_98995.1	chr11	98795090	98795290	+	1	NA	NA	NA	-579	NM_028722	74026	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male-specific lethal 1 homolog (Drosophila)	protein-coding	0.140000	0.726368	48(TTTTTTAAAGGG,+,0.00)
mm_112360.1	chr12	119101447	119101647	-	1	NA	NA	NA	-135126	NM_029961	77706	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0.010000	0.437811	
mm_48606.1	chr5	144255831	144256031	-	1	NA	NA	NA	706	NM_018772	55950	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.070000	0.646766	
mm_85823.1	chr9	110420788	110420988	-	1	NA	NA	NA	1080	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.005000	0.497512	
mm_135324.1	chr16	38784173	38784373	-	1	NA	NA	NA	15930	NM_178924	22268	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0.025000	0.532338	
mm_80926.1	chr9	102051617	102051817	+	1	NA	NA	NA	253258	NR_106163	102466241		NR_106163	ENSMUSG00000098521	Mir7243	Gm27363|mmu-mir-7243	microRNA 7243	ncRNA	0.000000	0.462687	
mm_11626.1	chr2	34775026	34775226	+	1	NA	NA	NA	3036	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.010000	0.432836	
mm_147671.1	chr18	60648177	60648377	-	1	NA	NA	NA	-15133	NR_045401	328963	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.045000	0.711443	
mm_103008.1	chr11	69695900	69696100	-	1	NA	NA	NA	98	NM_011614	21944	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0.055000	0.636816	
mm_99443.1	chr11	102433177	102433377	+	1	NA	NA	NA	2955	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.010000	0.532338	
mm_65077.1	chr7	19140079	19140279	-	1	NA	NA	NA	9017	NM_026111	67369	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	0.015000	0.402985	50(TGGCATTAAAGC,-,0.00)
mm_57812.1	chr6	129462336	129462536	-	1	NA	NA	NA	10343	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.363184	
mm_43196.1	chr5	129020123	129020323	+	1	NA	NA	NA	67	NM_009391	19384	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	0.170000	0.746269	
mm_3159.1	chr1	135155471	135155671	+	1	NA	NA	NA	8737	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.005000	0.462687	
mm_141527.1	chr17	31819209	31819409	-	1	NA	NA	NA	36483	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.030000	0.587065	-36(GGGTCTATAAGA,-,0.00),-34(GTCTATAAGAGA,-,0.00)
mm_14546.1	chr2	132846828	132847028	+	1	NA	NA	NA	262	NM_001024385	66586	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	0.170000	0.840796	
mm_17614.1	chr2	30929762	30929962	-	1	NA	NA	NA	-23139	NM_133673	30934	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.055000	0.587065	
mm_165502.1	chr2	167773031	167773231	+	1	NA	NA	NA	81954	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.015000	0.462687	
mm_136211.1	chr16	89888576	89888776	-	1	NA	NA	NA	-70324	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.010000	0.517413	
mm_58927.1	chr7	17972127	17972327	+	1	NA	NA	NA	60	NM_023289	66996	Mm.36666	NM_023289	ENSMUSG00000030368	Ceacam11	1600015D01Rik	carcinoembryonic antigen-related cell adhesion molecule 11	protein-coding	0.015000	0.537313	
mm_170829.1	chr2	176871586	176871786	+	1	NA	NA	NA	-7249	NR_040256	626877	Mm.490744	NR_040256		Gm14405	OTTMUSG00000016573	predicted gene 14405	pseudo	0.010000	0.482587	
mm_115151.1	chr13	105444166	105444366	+	1	NA	NA	NA	573	NM_008308	15550	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0.035000	0.601990	
mm_93188.1	chr10	93889878	93890078	-	1	NA	NA	NA	1224	NM_019648	56307	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	0.025000	0.472637	
mm_67567.1	chr7	81934072	81934272	-	1	NA	NA	NA	287	NM_013886	29877	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfrp3	2700022B06Rik|HRP-3	hepatoma-derived growth factor, related protein 3	protein-coding	0.185000	0.820896	
mm_52942.1	chr6	122952378	122952578	+	1	NA	NA	NA	-37	NM_001204241	73149	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.020000	0.527363	
mm_20927.1	chr2	150855651	150855851	-	1	NA	NA	NA	48980	NM_024465	76192	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.010000	0.383085	
mm_39346.1	chr5	8893815	8894015	+	1	NA	NA	NA	194	NM_008830	18670	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.130000	0.741294	
mm_32827.1	chr4	117563732	117563932	+	1	NA	NA	NA	13467	NM_080469	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.000000	0.313433	-53(GAATTTAAAGGG,-,0.00),83(CTATTTAAAAGG,-,0.00)
mm_15515.1	chr2	158306539	158306739	+	1	NA	NA	NA	146	NM_008489	16803	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	0.015000	0.606965	
mm_80262.1	chr9	72872333	72872533	+	1	NA	NA	NA	-53217	NM_028116	72135	Mm.273605	NM_028116	ENSMUSG00000034910	Pygo1	2600014C22Rik	pygopus 1	protein-coding	0.000000	0.338308	
mm_145106.1	chr18	44104454	44104654	+	1	NA	NA	NA	31	NM_030061	78242	Mm.99782	NM_030061	ENSMUSG00000061144	Spink12	9230117E20Rik	serine peptidase inhibitor, Kazal type 12	protein-coding	0.000000	0.358209	
mm_153152.1	chr19	34252382	34252582	-	1	NA	NA	NA	2891	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.040000	0.557214	
mm_165473.1	chr2	164289658	164289858	+	1	NA	NA	NA	490	NM_021363	64335	Mm.389393	NM_021363	ENSMUSG00000017003	Svs3a	9530026M05Rik|BB121242|Semg2|Svp-3|Svp3|Svs3	seminal vesicle secretory protein 3A	protein-coding	0.000000	0.467662	
mm_109347.1	chr12	109603818	109604018	+	1	NA	NA	NA	-27	NR_028261	75745	Mm.293263	NR_028261		Rian	5530401N18Rik|C130089L09Rik|Meg8	RNA imprinted and accumulated in nucleus	ncRNA	0.000000	0.462687	
mm_94696.1	chr11	20112392	20112592	+	1	NA	NA	NA	459	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.085000	0.616915	
mm_100730.1	chr11	3931704	3931904	-	1	NA	NA	NA	157	NM_001130459	21452	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	0.060000	0.656716	51(GGGTCTTTAAAG,-,0.00),52(GGTCTTTAAAGC,-,0.00),53(GTCTTTAAAGCG,+,0.00)
mm_11458.1	chr2	32193853	32194053	+	1	NA	NA	NA	-42730	NM_145145	99011	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0.040000	0.601990	
mm_128207.1	chr15	36055021	36055221	-	1	NA	NA	NA	85279	NM_001195748	626596	Mm.321798	NM_001195748	ENSMUSG00000037627	Rgs22	-	regulator of G-protein signalling 22	protein-coding	0.000000	0.467662	-42(TACTTTTAAAGC,-,0.00),-41(ACTTTTAAAGCA,+,0.00)
mm_155307.1	chrX	61185962	61186162	+	1	NA	NA	NA	-504	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.020000	0.472637	
mm_146137.1	chr18	74733598	74733798	+	1	NA	NA	NA	44757	NR_028560	100217466		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	0.020000	0.606965	
mm_160304.1	chr7	140202694	140202894	-	1	NA	NA	NA	-26	NM_001011814	258055	Mm.377339	NM_001011814	ENSMUSG00000050366	Olfr524	MOR103-14P	olfactory receptor 524	protein-coding	0.005000	0.542289	
mm_67502.1	chr7	80779147	80779347	-	1	NA	NA	NA	24084	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.025000	0.467662	
mm_125204.1	chr15	33083060	33083260	+	1	NA	NA	NA	31	NM_176073	54381	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0.050000	0.691542	
mm_112792.1	chr13	20204329	20204529	+	1	NA	NA	NA	113922	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.000000	0.522388	
mm_41511.1	chr5	92375497	92375697	+	1	NA	NA	NA	-12301	NR_038116	56066	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0.060000	0.567164	
mm_96560.1	chr11	68968083	68968283	+	1	NA	NA	NA	52	NM_028048	71998	Mm.298622	NM_028048	ENSMUSG00000018740	Slc25a35	1810012H11Rik	solute carrier family 25, member 35	protein-coding	0.070000	0.597015	
mm_91072.1	chr10	19009142	19009342	-	1	NA	NA	NA	2721	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.010000	0.398010	
mm_131650.1	chr16	20535411	20535611	+	1	NA	NA	NA	31	NM_009679	11773	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.090000	0.706468	
mm_118553.1	chr14	17660873	17661073	+	1	NA	NA	NA	13	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.105000	0.711443	
mm_47508.1	chr5	124051960	124052160	-	1	NA	NA	NA	-19800	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.025000	0.522388	
mm_83998.1	chr9	57467930	57468130	-	1	NA	NA	NA	30	NM_020270	56807	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	0.165000	0.766169	
mm_38907.1	chr4	149974887	149975087	-	1	NA	NA	NA	-19981	NM_029035	74646	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	0.005000	0.393035	-51(GACCATTTATGG,-,0.00),-49(CCATTTATGGTT,+,0.00),-7(TTTTTTAAAGCA,+,0.00)
mm_49269.1	chr6	17492783	17492983	+	1	NA	NA	NA	28926	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.015000	0.467662	
mm_74565.1	chr8	11008800	11009000	-	1	NA	NA	NA	-470	NM_001081212	384783	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.115000	0.651741	
mm_47200.1	chr5	120887505	120887705	-	1	NA	NA	NA	8	NM_011852	23960	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	0.025000	0.547264	
mm_68641.1	chr7	118443460	118443660	-	1	NA	NA	NA	-8	NM_138649	110058	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk	synaptotagmin XVII	protein-coding	0.025000	0.547264	
mm_16676.1	chr2	6872168	6872368	-	1	NA	NA	NA	-233	NM_001347094	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.135000	0.761194	
mm_150989.1	chr19	46573292	46573492	+	1	NA	NA	NA	27	NM_053196	94279	Mm.296837	NM_053196	ENSMUSG00000025036	Sfxn2	C79732|F630107H02Rik	sideroflexin 2	protein-coding	0.065000	0.651741	
mm_24830.1	chr3	95656076	95656276	+	1	NA	NA	NA	-2545	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.000000	0.517413	-33(GCATTAAAAGGG,+,0.00)
mm_90032.1	chr10	115430842	115431042	+	1	NA	NA	NA	45983	NM_001033261	216345	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0.000000	0.323383	
mm_106650.1	chr11	121063459	121063659	-	1	NA	NA	NA	10	NM_026907	58210	Mm.116986	NM_026907	ENSMUSG00000039364	Sectm1b	1810003C24Rik|K12|Sectm1	secreted and transmembrane 1B	protein-coding	0.015000	0.572139	
mm_151920.1	chr19	5799804	5800004	-	1	NA	NA	NA	2768	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.015000	0.407960	
mm_50392.1	chr6	48708219	48708419	+	1	NA	NA	NA	-75	NM_153175	231931	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	0.015000	0.452736	
mm_61661.1	chr7	80766343	80766543	+	1	NA	NA	NA	36888	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.015000	0.472637	
mm_61111.1	chr7	54660909	54661109	+	1	NA	NA	NA	-174236	NM_178705	233271	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	0.000000	0.283582	
mm_96935.1	chr11	70525820	70526020	+	1	NA	NA	NA	563	NM_008946	19175	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	0.035000	0.487562	
mm_151850.1	chr19	5771529	5771729	-	1	NA	NA	NA	-228	NM_023912	78891	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0.010000	0.487562	
mm_106082.1	chr11	116175064	116175264	-	1	NA	NA	NA	-6986	NM_172571	217335	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.020000	0.542289	
mm_5527.1	chr1	37916319	37916519	-	1	NA	NA	NA	74	NM_001033427	332427	Mm.332981	NM_001033427	ENSMUSG00000061584	Lyg2	Gm776	lysozyme G-like 2	protein-coding	0.015000	0.477612	
mm_164171.1	chr15	74785314	74785514	+	1	NA	NA	NA	-6555	NR_027837	78725	Mm.171357	NM_172433	ENSMUSG00000101026	D730001G18Rik	Ly6g6g	RIKEN cDNA D730001G18 gene	ncRNA	0.015000	0.472637	
mm_97363.1	chr11	77507065	77507265	+	1	NA	NA	NA	6108	NM_001024920	216964	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	0.020000	0.572139	
mm_33525.1	chr4	130932069	130932269	+	1	NA	NA	NA	-12216	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.005000	0.462687	
mm_71447.1	chr8	46521399	46521599	+	1	NA	NA	NA	30533	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.015000	0.527363	
mm_33356.1	chr4	129464444	129464644	+	1	NA	NA	NA	2865	NM_133889	100383	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	0.015000	0.512438	
mm_102115.1	chr11	53300093	53300293	-	1	NA	NA	NA	286	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.140000	0.751244	
mm_41498.1	chr5	92325022	92325222	+	1	NA	NA	NA	2957	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.015000	0.467662	
mm_33542.1	chr4	130934463	130934663	+	1	NA	NA	NA	-9822	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.010000	0.601990	
mm_167410.1	chr8	105877297	105877497	+	1	NA	NA	NA	-3484	NM_001301100	234699	Mm.28979	NM_181594	ENSMUSG00000036270	Edc4	BC022641	enhancer of mRNA decapping 4	protein-coding	0.000000	0.388060	
mm_103342.1	chr11	74723960	74724160	-	1	NA	NA	NA	-202	NR_037610	18472	Mm.397111	NM_013625	ENSMUSG00000020745	Pafah1b1	LIS-1|Lis1|MMS10-U|Mdsh|Ms10u|Pafaha	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	protein-coding	0.075000	0.736318	
mm_163554.1	chr13	23839628	23839828	+	1	NA	NA	NA	294	NM_134069	105355	Mm.27038	NM_134069	ENSMUSG00000036083	Slc17a3	AW261723|Npt4	solute carrier family 17 (sodium phosphate), member 3	protein-coding	0.000000	0.422886	
mm_168842.1	chr12	23634616	23634816	-	1	NA	NA	NA	462553	NM_001256489	66808	Mm.379124	NM_001256489	ENSMUSG00000073158	9030624G23Rik	-	RIKEN cDNA 9030624G23 gene	protein-coding	0.105000	0.726368	
mm_75222.1	chr8	39608058	39608258	-	1	NA	NA	NA	34520	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.005000	0.378109	
mm_52200.1	chr6	100704626	100704826	+	1	NA	NA	NA	-8	NM_198612	232313	Mm.272037	NM_198612	ENSMUSG00000030074	Gxylt2	Glt8d4|Gm152	glucoside xylosyltransferase 2	protein-coding	0.110000	0.706468	
mm_168252.1	chr10	8551566	8551766	-	1	NA	NA	NA	-32841	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.020000	0.492537	-37(CCCTTTATAAGC,+,0.00),-37(CCCTTTATAAGC,-,0.00),-35(CTTTATAAGCGC,+,0.00)
mm_14138.1	chr2	126152089	126152289	+	1	NA	NA	NA	48	NM_026981	69185	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	0.120000	0.741294	
mm_169807.1	chr16	18533192	18533392	-	1	NA	NA	NA	34421	NR_104347	13972	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|OTTMUSG00000033458|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	0.030000	0.393035	
mm_172645.1	chr8	26118886	26119086	-	1	NA	NA	NA	238	NM_207659	320191	Mm.334464	NM_207659	ENSMUSG00000037234	Hook3	5830454D03Rik|AI317159|E330005F07Rik	hook microtubule tethering protein 3	protein-coding	0.095000	0.666667	
mm_160687.1	chr10	21295914	21296114	+	1	NA	NA	NA	35	NM_001145209	56422	Mm.25527	NM_019702	ENSMUSG00000019977	Hbs1l	2810035F15Rik|AI326327|eRFS	Hbs1-like (S. cerevisiae)	protein-coding	0.160000	0.696517	
mm_23245.1	chr3	51223806	51224006	+	1	NA	NA	NA	-541	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.025000	0.427861	
mm_60511.1	chr7	44479522	44479722	+	1	NA	NA	NA	-4895	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.010000	0.492537	
mm_74003.1	chr8	121083235	121083435	+	1	NA	NA	NA	-225	NR_130109	68790	Mm.246916	NR_045471	ENSMUSG00000097336	Fendrr	1110050K14Rik|LL66|linc-Foxf1a|lincFoxf1	Foxf1 adjacent non-coding developmental regulatory RNA	ncRNA	0.050000	0.577114	
mm_135471.1	chr16	45880613	45880813	-	1	NA	NA	NA	-36335	NM_001252442	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology like domain, family B, member 2	protein-coding	0.015000	0.402985	13(CCATTTAAAGTC,+,0.00)
mm_123003.1	chr14	54993270	54993470	-	1	NA	NA	NA	1179	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.020000	0.537313	
mm_20220.1	chr2	125773341	125773541	-	1	NA	NA	NA	9429	NM_177608	70354	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.015000	0.467662	
mm_137654.1	chr17	28575634	28575834	+	1	NA	NA	NA	15	NM_026571	328789	Mm.284760	NM_026571	ENSMUSG00000062252	Lhfpl5	9330179O15Rik|Tmhs|hscy	lipoma HMGIC fusion partner-like 5	protein-coding	0.085000	0.661692	
mm_1791.1	chr1	78738042	78738242	+	1	NA	NA	NA	-78807	NM_021342	57814	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	0.010000	0.447761	
mm_84192.1	chr9	60521897	60522097	-	1	NA	NA	NA	-10962	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.175000	0.815920	
mm_127342.1	chr15	100599683	100599883	+	1	NA	NA	NA	201	NM_001304965	19009	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0.100000	0.751244	
mm_2678.1	chr1	127299909	127300109	+	1	NA	NA	NA	95023	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.005000	0.487562	
mm_54054.1	chr6	13839331	13839531	-	1	NA	NA	NA	511	NM_001330666	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.035000	0.472637	
mm_151262.1	chr19	54044974	54045174	+	1	NA	NA	NA	-108	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	0.075000	0.671642	
mm_62240.1	chr7	98703166	98703366	+	1	NA	NA	NA	-97	NM_028410	72981	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0.145000	0.825871	
mm_112507.1	chr13	8885569	8885769	+	1	NA	NA	NA	63	NM_145360	319554	Mm.29847	NM_145360	ENSMUSG00000058258	Idi1	4832416K17Rik	isopentenyl-diphosphate delta isomerase	protein-coding	0.070000	0.651741	
mm_137715.1	chr17	29099990	29100190	+	1	NA	NA	NA	6321	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.005000	0.577114	
mm_108350.1	chr12	80507106	80507306	+	1	NA	NA	NA	0	NR_045490	69522	Mm.390530	NR_045490		2310002D06Rik	-	RIKEN cDNA 2310002D06 gene	ncRNA	0.010000	0.512438	-53(CCTTTTCTGGGC,+,0.00)
mm_120952.1	chr14	76780753	76780953	+	1	NA	NA	NA	103285	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.020000	0.457711	
mm_32167.1	chr4	100227631	100227831	+	1	NA	NA	NA	131940	NM_001312690	26563	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding	0.010000	0.358209	
mm_75505.1	chr8	54077912	54078112	-	1	NA	NA	NA	480	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding	0.035000	0.532338	
mm_65268.1	chr7	19950639	19950839	-	1	NA	NA	NA	4	NM_027308	70080	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	0.040000	0.562189	
mm_7089.1	chr1	88584555	88584755	-	1	NA	NA	NA	33138	NR_037971	100503197	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.010000	0.522388	
mm_61293.1	chr7	67655064	67655264	+	1	NA	NA	NA	7754	NM_025905	67009	Mm.249356	NM_025905	ENSMUSG00000030555	Ttc23	1600012K10Rik	tetratricopeptide repeat domain 23	protein-coding	0.000000	0.487562	
mm_87958.1	chr10	63243826	63244026	+	1	NA	NA	NA	129	NM_026101	67345	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0.095000	0.696517	
mm_116055.1	chr13	27438521	27438721	-	1	NA	NA	NA	67	NM_001271379	19112	Mm.142728	NM_011167	ENSMUSG00000021345	Prl8a6	Ghd13|PLP-C1|PLP-Ca|PLP-calpha|Prlpc|Prlpc1	prolactin family 8, subfamily a, member 6	protein-coding	0.010000	0.417910	
mm_38422.1	chr4	139192550	139192750	-	1	NA	NA	NA	-249	NM_009798	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.080000	0.686567	
mm_10816.1	chr2	24350280	24350480	+	1	NA	NA	NA	5009	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.000000	0.358209	
mm_83822.1	chr9	53935994	53936194	-	1	NA	NA	NA	39207	NM_177769	270162	Mm.259791	NM_177769	ENSMUSG00000041986	Elmod1	4831417L10|AI428506|AI834991	ELMO/CED-12 domain containing 1	protein-coding	0.025000	0.502488	
mm_112680.1	chr13	16028459	16028659	+	1	NA	NA	NA	16708	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.000000	0.388060	
mm_138410.1	chr17	35068603	35068803	+	1	NA	NA	NA	1378	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.025000	0.507463	
mm_116381.1	chr13	41077956	41078156	-	1	NA	NA	NA	1650	NM_001145803	17152	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	0.020000	0.402985	-6(GTGCATTTAAGC,-,0.00),-4(GCATTTAAGCAC,+,0.00),87(TCCTTTTTAAGG,-,0.00),89(CTTTTTAAGGTC,+,0.00)
mm_110621.1	chr12	57151030	57151230	-	1	NA	NA	NA	9513	NM_001167976	217593	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0.000000	0.303483	
mm_119917.1	chr14	54953388	54953588	+	1	NA	NA	NA	-4346	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.035000	0.532338	
mm_122820.1	chr14	54641261	54641461	-	1	NA	NA	NA	3	NM_199470	239096	Mm.386871	NM_199470	ENSMUSG00000059674	Cdh24	1700040A22Rik|ENSMUSG00000022188	cadherin-like 24	protein-coding	0.115000	0.766169	
mm_34329.1	chr4	142078184	142078384	+	1	NA	NA	NA	-6014	NR_027137	100038693	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	ENSMUSG00000073728|Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.015000	0.477612	-37(TTCTTTAAAAGG,-,0.00),-36(TCTTTAAAAGGG,+,0.00)
mm_168214.1	chr10	75860144	75860344	-	1	NA	NA	NA	6	NM_010798	17319	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor	protein-coding	0.095000	0.651741	
mm_74707.1	chr8	17106563	17106763	-	1	NA	NA	NA	428722	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.005000	0.402985	
mm_56741.1	chr6	115808672	115808872	-	1	NA	NA	NA	-29	NM_172086	19951	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	0.070000	0.557214	
mm_15639.1	chr2	163054564	163054764	+	1	NA	NA	NA	29	NM_008652	17865	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	0.110000	0.701493	
mm_102852.1	chr11	69395355	69395555	-	1	NA	NA	NA	-109	NM_001045525	327951	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	0.060000	0.507463	
mm_93309.1	chr10	98744210	98744410	-	1	NA	NA	NA	-170842	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.020000	0.447761	-47(CACTTTATAAAC,-,0.00),-45(CTTTATAAACAG,+,0.00)
mm_162727.1	chr10	41239766	41239966	+	1	NA	NA	NA	63375	NM_133999	103199	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0.005000	0.437811	
mm_3519.1	chr1	150107412	150107612	+	1	NA	NA	NA	7481	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.283582	
mm_22568.1	chr3	10014412	10014612	+	1	NA	NA	NA	1927	NM_001272098	16592	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0.005000	0.333333	
mm_1837.1	chr1	82824849	82825049	+	1	NA	NA	NA	-14511	NM_001310713	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.005000	0.383085	50(TCCTTTTAGAGG,-,0.00),51(CCTTTTAGAGGT,+,0.00)
mm_112464.1	chr13	5867647	5867847	+	1	NA	NA	NA	6258	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.000000	0.313433	
mm_44886.1	chr5	34660003	34660203	-	1	NA	NA	NA	45	NM_029278	75416	Mm.40292	NM_029278	ENSMUSG00000036693	Nop14	2610033H07Rik|Nol14	NOP14 nucleolar protein	protein-coding	0.075000	0.552239	
mm_56960.1	chr6	120037937	120038137	-	1	NA	NA	NA	618	NM_001199083	232341	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0.130000	0.731343	
mm_99965.1	chr11	113684412	113684612	+	1	NA	NA	NA	100	NM_177777	276852	Mm.239566	NM_177777	ENSMUSG00000041623	D11Wsu47e	-	DNA segment, Chr 11, Wayne State University 47, expressed	protein-coding	0.085000	0.606965	
mm_37665.1	chr4	129111773	129111973	-	1	NA	NA	NA	6325	NM_001290706	66260	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.015000	0.497512	
mm_160247.1	chr7	105337755	105337955	-	1	NA	NA	NA	-141	NM_147061	259063	Mm.377817	NM_147061	ENSMUSG00000043948	Olfr691	MOR31-6	olfactory receptor 691	protein-coding	0.000000	0.442786	-56(GGTTCTTAAAGC,-,0.00)
mm_144486.1	chr18	24121530	24121730	+	1	NA	NA	NA	189	NM_172625	225280	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0.080000	0.631841	
mm_137770.1	chr17	29490754	29490954	+	1	NA	NA	NA	-191	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.105000	0.746269	
mm_118802.1	chr14	25178705	25178905	+	1	NA	NA	NA	-35564	NR_045718	75862	Mm.109191	NR_045718		4930572O13Rik	-	RIKEN cDNA 4930572O13 gene	ncRNA	0.000000	0.542289	
mm_65902.1	chr7	30192818	30193018	-	1	NA	NA	NA	2130	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.045000	0.636816	
mm_161982.1	chr19	22915885	22916085	+	1	NA	NA	NA	165380	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.035000	0.562189	-83(GCTTCTAAAAGC,-,0.00)
mm_139812.1	chr17	66485177	66485377	+	1	NA	NA	NA	34393	NM_024448	19328	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0.005000	0.462687	
mm_86701.1	chr10	18526238	18526438	+	1	NA	NA	NA	19738	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	0.025000	0.577114	
mm_22553.1	chr3	9608734	9608934	+	1	NA	NA	NA	1251	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.025000	0.532338	
mm_29116.1	chr3	104961612	104961812	-	1	NA	NA	NA	-3	NM_009520	22414	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.135000	0.771144	
mm_159419.1	chr3	107183064	107183264	+	1	NA	NA	NA	21	NM_001081140	242151	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	0.010000	0.577114	
mm_110732.1	chr12	69769638	69769838	-	1	NA	NA	NA	-5794	NR_030450	751538		NR_030450	ENSMUSG00000076065	Mir681	Mirn681|mmu-mir-681	microRNA 681	ncRNA	0.020000	0.512438	
mm_6048.1	chr1	60042853	60043053	-	1	NA	NA	NA	169	NM_001316694	70375	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15	islet cell autoantigen 1-like	protein-coding	0.155000	0.810945	
mm_101935.1	chr11	50207156	50207356	-	1	NA	NA	NA	3564	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.030000	0.616915	
mm_133125.1	chr16	65815754	65815954	+	1	NA	NA	NA	221	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.060000	0.621891	
mm_70514.1	chr8	12947798	12947998	+	1	NA	NA	NA	-43	NR_128567	104797311		NR_128567	ENSMUSG00000105030	Gm38671	Mir9768|mmu-mir-9768	predicted gene, 38671	ncRNA	0.055000	0.597015	
mm_124587.1	chr15	3271300	3271500	+	1	NA	NA	NA	423	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.025000	0.497512	
mm_5273.1	chr1	18223506	18223706	-	1	NA	NA	NA	-42	NR_002879	654454	Mm.383637	NR_002879	ENSMUSG00000070977	Defb44-ps	Defb44|Defb49|Defb49-ps|EG574082	defensin beta 44, pseudogene	pseudo	0.000000	0.417910	-2(TCATATAAAGAC,+,0.00)
mm_35533.1	chr4	41314643	41314843	-	1	NA	NA	NA	158	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.100000	0.626866	
mm_142800.1	chr17	50293499	50293699	-	1	NA	NA	NA	21	NM_010021	13164	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	0.105000	0.686567	
mm_91398.1	chr10	30802760	30802960	-	1	NA	NA	NA	247	NM_172495	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.100000	0.731343	
mm_149532.1	chr19	12464713	12464913	+	1	NA	NA	NA	4034	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.005000	0.462687	
mm_100761.1	chr11	4497471	4497671	-	1	NA	NA	NA	-56489	NM_029458	75828	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0.020000	0.467662	
mm_3357.1	chr1	138172210	138172410	+	1	NA	NA	NA	2816	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.477612	
mm_89062.1	chr10	82896774	82896974	+	1	NA	NA	NA	30248	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.005000	0.422886	
mm_127869.1	chr15	8436558	8436758	-	1	NA	NA	NA	7805	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.000000	0.353234	
mm_168195.1	chr10	64399922	64400122	-	1	NA	NA	NA	-309767	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.005000	0.293532	
mm_81390.1	chr9	108984791	108984991	+	1	NA	NA	NA	-1272	NM_145077	171530	Mm.388865	NM_145077	ENSMUSG00000049699	Ucn2	Ucn II|Ucn-2|ucn-II	urocortin 2	protein-coding	0.015000	0.542289	-43(GGGCATTAAAGC,-,0.00),-29(CTGTTTTAAAAG,-,0.00),-28(TGTTTTAAAAGG,-,0.00),-27(GTTTTAAAAGGC,+,0.00)
mm_143693.1	chr17	80373127	80373327	-	1	NA	NA	NA	315	NR_028385	791338	Mm.204722	NR_028385		Gm10190	ENSMUSG00000066938	predicted gene 10190	ncRNA	0.170000	0.721393	
mm_20578.1	chr2	131141620	131141820	-	1	NA	NA	NA	14308	NM_028306	72630	Mm.277465	NM_028306	ENSMUSG00000074793	Hspa12b	2700081N06Rik	heat shock protein 12B	protein-coding	0.005000	0.522388	
mm_85071.1	chr9	91350838	91351038	-	1	NA	NA	NA	14861	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.060000	0.587065	
mm_71773.1	chr8	66469079	66469279	+	1	NA	NA	NA	17328	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.000000	0.313433	-90(GTTTTTAAATGG,-,0.00)
mm_23727.1	chr3	69019157	69019357	+	1	NA	NA	NA	9355	NR_029735	723949		NR_029735	ENSMUSG00000065606	Mir16-2	Mirn16-2|mir-16-2	microRNA 16-2	ncRNA	0.005000	0.293532	
mm_22567.1	chr3	10013139	10013339	+	1	NA	NA	NA	654	NM_001272098	16592	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0.080000	0.601990	-49(CTCTTTAGAGGC,+,0.00)
mm_59592.1	chr7	28137008	28137208	+	1	NA	NA	NA	7642	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.572139	
mm_16179.1	chr2	172588664	172588864	+	1	NA	NA	NA	37773	NM_001159696	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding	0.000000	0.512438	
mm_144307.1	chr18	12504093	12504293	+	1	NA	NA	NA	-6	NM_001347461	16774	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0.020000	0.606965	
mm_122199.1	chr14	31781395	31781595	-	1	NA	NA	NA	48920	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.030000	0.462687	
mm_159148.1	chr2	87711587	87711787	-	1	NA	NA	NA	217	NM_001011833	258101	Mm.377350	NM_001011833	ENSMUSG00000075150	Olfr1137	MOR177-20|MOR40-9P	olfactory receptor 1137	protein-coding	0.015000	0.462687	
mm_47579.1	chr5	124552719	124552919	-	1	NA	NA	NA	-45	NM_001190795	67848	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	0.120000	0.646766	
mm_63523.1	chr7	127904261	127904461	+	1	NA	NA	NA	288	NM_009739	12041	Mm.425495	NM_009739	ENSMUSG00000030802	Bckdk	AI327402	branched chain ketoacid dehydrogenase kinase	protein-coding	0.030000	0.582090	
mm_28687.1	chr3	95511638	95511838	-	1	NA	NA	NA	12528	NM_007802	13038	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.010000	0.358209	
mm_60656.1	chr7	44929622	44929822	+	1	NA	NA	NA	-232	NM_001077264	11771	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	0.080000	0.616915	
mm_37335.1	chr4	119656651	119656851	-	1	NA	NA	NA	2194	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.025000	0.502488	54(CAGCATAAATGG,-,0.00)
mm_56623.1	chr6	112721672	112721872	-	1	NA	NA	NA	-25102	NM_001167730	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.010000	0.398010	
mm_137496.1	chr17	26970891	26971091	+	1	NA	NA	NA	-2188	NM_001005916	474156	Mm.328890	NM_001005916	ENSMUSG00000079605	Zbtb9	3930402F13Rik	zinc finger and BTB domain containing 9	protein-coding	0.000000	0.562189	
mm_57321.1	chr6	124732994	124733194	-	1	NA	NA	NA	60	NM_013545	15170	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.030000	0.606965	
mm_20224.1	chr2	125782653	125782853	-	1	NA	NA	NA	117	NM_177608	70354	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.140000	0.771144	
mm_102106.1	chr11	53257611	53257811	-	1	NA	NA	NA	42768	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.010000	0.522388	
mm_169596.1	chr15	32856638	32856838	+	1	NA	NA	NA	-63985	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0.025000	0.497512	
mm_80224.1	chr9	72661897	72662097	+	1	NA	NA	NA	-350	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.070000	0.606965	
mm_49701.1	chr6	34179205	34179405	+	1	NA	NA	NA	-2251	NM_021435	58246	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0.005000	0.527363	
mm_13899.1	chr2	120463480	120463680	+	1	NA	NA	NA	-13	NM_001177799	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.015000	0.467662	
mm_109403.1	chr12	110444592	110444792	+	1	NA	NA	NA	-2487	NM_001135001	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.015000	0.502488	
mm_154475.1	chrM	4007	4207	-	1	NA	NA	NA	NA	NA									0.020000	0.383085	
mm_98523.1	chr11	94967531	94967731	+	1	NA	NA	NA	38	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.015000	0.577114	
mm_52639.1	chr6	117174636	117174836	+	1	NA	NA	NA	6201	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.005000	0.318408	
mm_49359.1	chr6	22440035	22440235	+	1	NA	NA	NA	-84054	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.035000	0.482587	
mm_162387.1	chr1	75210624	75210824	-	1	NA	NA	NA	54	NM_029010	74577	Mm.458319	NM_029010	ENSMUSG00000026200	Glb1l	4833408P15Rik	galactosidase, beta 1-like	protein-coding	0.060000	0.606965	
mm_165120.1	chr2	3779802	3780002	+	1	NA	NA	NA	66444	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.025000	0.467662	
mm_129080.1	chr15	75841846	75842046	-	1	NA	NA	NA	-38	NM_172121	223642	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0.115000	0.671642	
mm_83485.1	chr9	45935795	45935995	-	1	NA	NA	NA	163	NM_011526	21345	Mm.283283	NM_011526	ENSMUSG00000032085	Tagln	Sm22|Sm22a|Ws310	transgelin	protein-coding	0.050000	0.646766	-34(GCCTTTAAACCC,+,0.00)
mm_51872.1	chr6	90552156	90552356	+	1	NA	NA	NA	1408	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.000000	0.467662	
mm_85616.1	chr9	107614547	107614747	-	1	NA	NA	NA	-5406	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.025000	0.477612	
mm_144117.1	chr18	4484622	4484822	+	1	NA	NA	NA	109130	NM_026157	67440	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0.005000	0.462687	
mm_138943.1	chr17	44038881	44039081	+	1	NA	NA	NA	-39821	NM_001168620	83965	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	0.015000	0.437811	
mm_121644.1	chr14	8666158	8666358	-	1	NA	NA	NA	32	NM_028934	74430	Mm.271901	NM_028934	ENSMUSG00000021747	4930452B06Rik	4933406L09Rik|AI854000	RIKEN cDNA 4930452B06 gene	protein-coding	0.125000	0.736318	
mm_116508.1	chr13	45553023	45553223	-	1	NA	NA	NA	45679	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.010000	0.492537	
mm_86135.1	chr9	116618397	116618597	-	1	NA	NA	NA	-443134	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.000000	0.402985	
mm_129460.1	chr15	78572672	78572872	-	1	NA	NA	NA	11	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.025000	0.626866	
mm_31572.1	chr4	57594990	57595190	+	1	NA	NA	NA	26842	NM_172868	242481	Mm.331630	NM_172868	ENSMUSG00000090053	Palm2	53-H12|B130066I24|R75368|pEN70	paralemmin 2	protein-coding	0.000000	0.383085	
mm_83874.1	chr9	55048477	55048677	-	1	NA	NA	NA	-33	NM_148944	108015	Mm.32694	NM_148944	ENSMUSG00000035200	Chrnb4	Acrb-4|Acrb4	cholinergic receptor, nicotinic, beta polypeptide 4	protein-coding	0.050000	0.661692	
mm_57823.1	chr6	129462789	129462989	-	1	NA	NA	NA	9890	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.398010	
mm_31774.1	chr4	63558704	63558904	+	1	NA	NA	NA	-1556	NM_144905	230279	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.155000	0.761194	
mm_11847.1	chr2	45197685	45197885	+	1	NA	NA	NA	-84506	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.020000	0.373134	
mm_165190.1	chr2	30469121	30469321	-	1	NA	NA	NA	4978	NM_030244	72500	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.015000	0.557214	
mm_75656.1	chr8	65129490	65129690	-	1	NA	NA	NA	-53	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA	0.025000	0.437811	
mm_34042.1	chr4	138216338	138216538	+	1	NA	NA	NA	-174	NM_001122896	15441	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	0.090000	0.676617	
mm_38019.1	chr4	133754250	133754450	-	1	NA	NA	NA	-739	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.090000	0.681592	
mm_138393.1	chr17	35050537	35050737	+	1	NA	NA	NA	394	NM_033444	114584	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.025000	0.582090	
mm_124870.1	chr15	10177642	10177842	+	1	NA	NA	NA	504	NM_011169	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.050000	0.557214	
mm_82735.1	chr9	25251953	25252153	-	1	NA	NA	NA	-386	NM_009859	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.090000	0.671642	
mm_74683.1	chr8	14095565	14095765	-	1	NA	NA	NA	-210	NM_001145965	244310	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	discs, large (Drosophila) homolog-associated protein 2	protein-coding	0.095000	0.681592	
mm_105153.1	chr11	101465843	101466043	-	1	NA	NA	NA	256	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.130000	0.721393	
mm_31220.1	chr4	44012578	44012778	+	1	NA	NA	NA	28	NM_001290470	12757	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.085000	0.606965	
mm_153378.1	chr19	40371351	40371551	-	1	NA	NA	NA	30859	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.005000	0.378109	
mm_92029.1	chr10	62468232	62468432	-	1	NA	NA	NA	18266	NM_001113355	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.005000	0.417910	
mm_166341.1	chr5	114897530	114897730	+	1	NA	NA	NA	696	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.025000	0.552239	
mm_37323.1	chr4	119415351	119415551	-	1	NA	NA	NA	70	NM_001270435	73332	Mm.425204	NM_028506	ENSMUSG00000028637	Ccdc30	1700001O02Rik|1700041C02Rik|1700111D19Rik|4930445I03Rik	coiled-coil domain containing 30	protein-coding	0.100000	0.691542	
mm_65647.1	chr7	28055105	28055305	-	1	NA	NA	NA	-5113	NM_011874	23996	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	0.030000	0.497512	
mm_140435.1	chr17	88440665	88440865	+	1	NA	NA	NA	53	NM_180974	14236	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.085000	0.761194	
mm_4930.1	chr1	191085767	191085967	+	1	NA	NA	NA	-12547	NM_030060	381319	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.030000	0.601990	
mm_43266.1	chr5	130369347	130369547	+	1	NA	NA	NA	-11	NM_181045	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.045000	0.606965	
mm_118902.1	chr14	26652139	26652339	+	1	NA	NA	NA	14042	NM_007479	11843	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.000000	0.398010	
mm_33844.1	chr4	135855626	135855826	+	1	NA	NA	NA	-345	NM_001284196	14105	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0.065000	0.597015	
mm_19491.1	chr2	93334391	93334591	-	1	NA	NA	NA	-4	NM_183180	241556	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	0.125000	0.796020	
mm_167035.1	chr7	73558826	73559026	+	1	NA	NA	NA	-531	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.055000	0.467662	-35(AGCCATTAAAAG,-,0.00),-33(CCATTAAAAGCT,+,0.00)
mm_5551.1	chr1	38638532	38638732	-	1	NA	NA	NA	-11388	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.015000	0.417910	38(GCCTCTATAAGT,-,0.00)
mm_43228.1	chr5	129895673	129895873	+	1	NA	NA	NA	50	NM_183088	71970	Mm.422716	NM_183088	ENSMUSG00000034173	Zbed5	2410018M08Rik|Scand3	zinc finger, BED type containing 5	protein-coding	0.080000	0.631841	
mm_45747.1	chr5	86632366	86632566	-	1	NA	NA	NA	-42	NM_178730	243083	Mm.106867	NM_178730	ENSMUSG00000048764	Tmprss11f	4631408C20|4732406D01Rik	transmembrane protease, serine 11f	protein-coding	0.010000	0.417910	
mm_107218.1	chr12	26456022	26456222	+	1	NA	NA	NA	330	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.020000	0.562189	
mm_156749.1	chrX	160125921	160126121	+	1	NA	NA	NA	12409	NM_008810	18597	Mm.34775	NM_008810	ENSMUSG00000031299	Pdha1	Pdha-1	pyruvate dehydrogenase E1 alpha 1	protein-coding	0.015000	0.388060	
mm_81409.1	chr9	109051901	109052101	+	1	NA	NA	NA	-2865	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.025000	0.547264	
mm_95311.1	chr11	46386647	46386847	+	1	NA	NA	NA	2768	NM_001281968	16428	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	0.010000	0.472637	
mm_80557.1	chr9	83431427	83431627	+	1	NA	NA	NA	-20	NR_102437	100039186	Mm.212721	NR_102437	ENSMUSG00000099718	Gm2087	-	predicted gene 2087	ncRNA	0.030000	0.492537	
mm_114722.1	chr13	83715150	83715350	+	1	NA	NA	NA	-12856	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.050000	0.547264	55(GCTTATATAGAC,+,0.00)
mm_280.1	chr1	21257048	21257248	+	1	NA	NA	NA	16563	NM_010356	14859	Mm.394593	NM_010356	ENSMUSG00000025934	Gsta3	Gst2-3	glutathione S-transferase, alpha 3	protein-coding	0.015000	0.427861	
mm_88013.1	chr10	67145072	67145272	+	1	NA	NA	NA	17914	NM_207221	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.000000	0.348259	
mm_78467.1	chr9	32616176	32616376	+	1	NA	NA	NA	-74824	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.015000	0.512438	
mm_121932.1	chr14	23967054	23967254	-	1	NA	NA	NA	37051	NM_001253375	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.015000	0.507463	
mm_3053.1	chr1	134061001	134061201	+	1	NA	NA	NA	18054	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.045000	0.597015	
mm_355.1	chr1	33669771	33669971	+	1	NA	NA	NA	47	NR_033199	67503	Mm.87069	NM_026204	ENSMUSG00000103746	1700001G17Rik	-	RIKEN cDNA 1700001G17 gene	ncRNA	0.090000	0.572139	
mm_171911.1	chr5	53555671	53555871	+	1	NA	NA	NA	-8	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.020000	0.497512	
mm_140147.1	chr17	80062444	80062644	+	1	NA	NA	NA	-276	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.120000	0.671642	
mm_150920.1	chr19	46083016	46083216	+	1	NA	NA	NA	7269	NM_001039351	70769	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	0.010000	0.552239	
mm_46744.1	chr5	111178564	111178764	-	1	NA	NA	NA	-152033	NM_001301644	56305	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0.035000	0.572139	
mm_19888.1	chr2	114050388	114050588	-	1	NA	NA	NA	2387	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.020000	0.537313	
mm_151338.1	chr19	55895066	55895266	+	1	NA	NA	NA	-155	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.030000	0.417910	20(AGCTATTAAAGC,-,0.00)
mm_95376.1	chr11	49090096	49090296	+	1	NA	NA	NA	3179	NM_008330	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.005000	0.487562	10(TTTTTTAAAGGC,+,0.00)
mm_170006.1	chr1	71653120	71653320	-	1	NA	NA	NA	14	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.100000	0.721393	15(TCCCATATAAGC,-,0.00)
mm_162942.1	chr10	128704083	128704283	+	1	NA	NA	NA	868	NM_183417	12566	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	0.005000	0.477612	-41(GCTTTTAGACAT,+,0.00)
mm_14542.1	chr2	132816058	132816258	+	1	NA	NA	NA	17	NM_001291054	66634	Mm.157070	NM_025676	ENSMUSG00000027353	Mcm8	5730432L01Rik	minichromosome maintenance 8 homologous recombination repair factor	protein-coding	0.095000	0.601990	
mm_168585.1	chr1	173491191	173491391	-	1	NA	NA	NA	44666	NM_001024721	545384	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	0.005000	0.457711	
mm_118391.1	chr13	118658602	118658802	-	1	NA	NA	NA	41	NR_131153	100038690	Mm.384983	NR_131153		Gm10732	ENSMUSG00000074638	predicted gene 10732	ncRNA	0.010000	0.432836	
mm_58389.1	chr7	3206773	3206973	+	1	NA	NA	NA	-11753	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.005000	0.547264	
mm_3331.1	chr1	137936928	137937128	+	1	NA	NA	NA	-29427	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.020000	0.432836	
mm_13716.1	chr2	117179400	117179600	+	1	NA	NA	NA	-5627	NR_030440	732489		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.005000	0.328358	
mm_165003.1	chr19	22448465	22448665	-	1	NA	NA	NA	357	NM_177341	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.025000	0.562189	
mm_152202.1	chr19	7606860	7607060	-	1	NA	NA	NA	216	NM_019516	56072	Mm.298242	NM_019516	ENSMUSG00000024972	Lgals12	AW987437|Grip1	lectin, galactose binding, soluble 12	protein-coding	0.030000	0.577114	
mm_80047.1	chr9	69289780	69289980	+	1	NA	NA	NA	39	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.115000	0.741294	3(CCTCTTATGGCT,+,0.00)
mm_26338.1	chr3	142547060	142547260	+	1	NA	NA	NA	-12892	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.000000	0.472637	
mm_157315.1	chrX	21061922	21062122	-	1	NA	NA	NA	16	NM_001013387	319535	Mm.170163	NM_001013387	ENSMUSG00000054737	Zfp182	6330583I20Rik|Znf182	zinc finger protein 182	protein-coding	0.055000	0.507463	
mm_119452.1	chr14	46899336	46899536	+	1	NA	NA	NA	16471	NM_001037221	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.020000	0.407960	-5(GCTTAAAGACGC,+,0.00)
mm_31229.1	chr4	44300820	44301020	+	1	NA	NA	NA	3	NM_010790	17279	Mm.268668	NM_010790	ENSMUSG00000035683	Melk	AI327312|MPK38|mKIAA0175	maternal embryonic leucine zipper kinase	protein-coding	0.075000	0.656716	
mm_121269.1	chr14	103346810	103347010	+	1	NA	NA	NA	-110	NM_207215	105689	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.090000	0.676617	
mm_20231.1	chr2	125839380	125839580	-	1	NA	NA	NA	19602	NM_009939	12848	Mm.3596	NM_009939	ENSMUSG00000027206	Cops2	AI315723|C85265|Csn2|Sgn2|TRIP-15|Trip15	COP9 signalosome subunit 2	protein-coding	0.015000	0.388060	
mm_99391.1	chr11	102097747	102097947	+	1	NA	NA	NA	3453	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.010000	0.547264	
mm_143660.1	chr17	79714630	79714830	-	1	NA	NA	NA	311	NM_009994	13078	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0.040000	0.597015	
mm_67286.1	chr7	78721234	78721434	-	1	NA	NA	NA	-3114	NR_015542	414121	Mm.482537	NR_015542	ENSMUSG00000059146	E430016F16Rik	-	RIKEN cDNA E430016F16 gene	ncRNA	0.005000	0.457711	
mm_20646.1	chr2	132029719	132029919	-	1	NA	NA	NA	169	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.115000	0.746269	
mm_146696.1	chr18	12941592	12941792	-	1	NA	NA	NA	149	NM_207530	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.110000	0.736318	
mm_86301.1	chr9	122310850	122311050	-	1	NA	NA	NA	-16527	NM_133979	102566	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	0.050000	0.646766	
mm_118846.1	chr14	25663804	25664004	+	1	NA	NA	NA	-30266	NM_134084	105675	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.020000	0.572139	24(GCTTTTAAATGA,+,0.00)
mm_125275.1	chr15	36210379	36210579	+	1	NA	NA	NA	29685	NR_106173	102465888		NR_106173	ENSMUSG00000098457	Mir8097	Gm27497|mmu-mir-8097	microRNA 8097	ncRNA	0.075000	0.676617	
mm_116728.1	chr13	51717723	51717923	-	1	NA	NA	NA	66115	NM_029279	75420	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.025000	0.522388	
mm_69987.1	chr7	142380863	142381063	-	1	NA	NA	NA	6907	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.005000	0.472637	
mm_135292.1	chr16	38550055	38550255	-	1	NA	NA	NA	101	NM_172380	224143	Mm.284366	NM_172380	ENSMUSG00000034064	Poglut1	9630046K23Rik|Clp46|Ktelc1|Rumi	protein O-glucosyltransferase 1	protein-coding	0.110000	0.716418	
mm_123508.1	chr14	66235498	66235698	-	1	NA	NA	NA	-22046	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.005000	0.477612	
mm_157912.1	chrX	78545181	78545381	-	1	NA	NA	NA	38524	NM_001164275	546336	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	0.005000	0.442786	
mm_130795.1	chr15	101690401	101690601	-	1	NA	NA	NA	3804	NM_008476	16687	Mm.302399	NM_008476	ENSMUSG00000058354	Krt6a	2310016L08Rik|Krt2-6a|Krt2-6c|MK6a|mK6[a]	keratin 6A	protein-coding	0.010000	0.567164	
mm_3328.1	chr1	137931656	137931856	+	1	NA	NA	NA	-34699	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.020000	0.393035	
mm_81166.1	chr9	107299318	107299518	+	1	NA	NA	NA	2759	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.005000	0.492537	
mm_3371.1	chr1	138963345	138963545	+	1	NA	NA	NA	-264	NM_001166501	329260	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.050000	0.597015	
mm_132638.1	chr16	39984265	39984465	+	1	NA	NA	NA	1082020	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.050000	0.592040	-35(GGTCCTATAAGG,-,0.00)
mm_124368.1	chr14	105892738	105892938	-	1	NA	NA	NA	3981	NM_011897	24064	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty homolog 2 (Drosophila)	protein-coding	0.025000	0.497512	
mm_104380.1	chr11	94473848	94474048	-	1	NA	NA	NA	250	NM_001177888	12291	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0.090000	0.711443	
mm_124386.1	chr14	108913999	108914199	-	1	NA	NA	NA	140	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.045000	0.552239	
mm_11200.1	chr2	29125149	29125349	+	1	NA	NA	NA	257	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.150000	0.736318	
mm_153146.1	chr19	34249245	34249445	-	1	NA	NA	NA	6028	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.005000	0.472637	
mm_158147.1	chrX	103467924	103468124	-	1	NA	NA	NA	15209	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.000000	0.353234	
mm_109429.1	chr12	110609253	110609453	+	1	NA	NA	NA	7958	NM_030238	13424	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0.020000	0.422886	
mm_41367.1	chr5	90508716	90508916	+	1	NA	NA	NA	-10133	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.000000	0.313433	
mm_36883.1	chr4	107253242	107253442	-	1	NA	NA	NA	191	NM_029985	77809	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	0.100000	0.746269	
mm_145276.1	chr18	53109207	53109407	+	1	NA	NA	NA	-67058	NM_026386	67804	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.005000	0.497512	
mm_157575.1	chrX	52613858	52614058	-	1	NA	NA	NA	16	NM_016697	14734	Mm.22515	NM_016697	ENSMUSG00000055653	Gpc3	OCI-5	glypican 3	protein-coding	0.115000	0.726368	
mm_43581.1	chr5	137746596	137746796	+	1	NA	NA	NA	727	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.025000	0.537313	
mm_170282.1	chr18	27599172	27599372	+	1	NA	NA	NA	-960892	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.035000	0.557214	
mm_124597.1	chr15	3275474	3275674	+	1	NA	NA	NA	4597	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.015000	0.353234	
mm_88555.1	chr10	78780270	78780470	+	1	NA	NA	NA	-126	NM_009200	20513	Mm.6257	NM_009200	ENSMUSG00000005357	Slc1a6	EAAT4	solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6	protein-coding	0.130000	0.825871	
mm_107039.1	chr12	13566062	13566262	+	1	NA	NA	NA	61484	NR_136761	102639399	Mm.122052	NR_136761		Gm35725	-	predicted gene, 35725	ncRNA	0.015000	0.572139	
mm_52416.1	chr6	113392972	113393172	+	1	NA	NA	NA	575	NM_133923	101100	Mm.388573	NM_133923	ENSMUSG00000030276	Ttll3	4833441J24Rik|AI450050	tubulin tyrosine ligase-like family, member 3	protein-coding	0.025000	0.562189	
mm_133243.1	chr16	77093521	77093721	+	1	NA	NA	NA	79552	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.025000	0.442786	
mm_108459.1	chr12	83028119	83028319	+	1	NA	NA	NA	-89064	NR_046045	74283	Mm.398247	NR_046045	ENSMUSG00000100890	1700085C21Rik	-	RIKEN cDNA 1700085C21 gene	ncRNA	0.000000	0.373134	21(CTCTTTATGGTC,+,0.00)
mm_120357.1	chr14	64093597	64093797	+	1	NA	NA	NA	1	NM_001193631	100504162	Mm.72752	NM_001193631	ENSMUSG00000052099	Prss51	1700007N14Rik	protease, serine 51	protein-coding	0.000000	0.532338	
mm_64672.1	chr7	4471159	4471359	-	1	NA	NA	NA	-375	NR_028416	320749	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	0.100000	0.681592	
mm_162794.1	chr10	76253720	76253920	+	1	NA	NA	NA	-16	NM_009115	20203	Mm.235998	NM_009115	ENSMUSG00000033208	S100b	AI850290|Bpb	S100 protein, beta polypeptide, neural	protein-coding	0.010000	0.582090	
mm_34659.1	chr4	150866463	150866663	+	1	NA	NA	NA	11472	NM_133753	74155	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.030000	0.557214	-57(ACCCATTAAAAG,-,0.00),-55(CCATTAAAAGCT,+,0.00)
mm_160155.1	chr7	43975955	43976155	+	1	NA	NA	NA	-6	NM_010116	13648	Mm.440884	NM_010116	ENSMUSG00000059042	Klk1b9	EGF-BP C|Egfbp-3|Egfbp3|KAL|Klk9|kallikrein|mGk-9	kallikrein 1-related peptidase b9	protein-coding	0.000000	0.572139	-32(GGGTTTTTAAAG,-,0.00),-30(GTTTTTAAAGTC,+,0.00)
mm_32271.1	chr4	102625236	102625436	+	1	NA	NA	NA	35493	NM_001177981	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.010000	0.512438	
mm_44812.1	chr5	33535371	33535571	-	1	NA	NA	NA	94164	NM_178390	74504	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	0.025000	0.537313	
mm_163597.1	chr13	41569470	41569670	+	1	NA	NA	NA	-36646	NM_001163572	621976	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.015000	0.457711	58(GCTTTTATGTGA,+,0.00)
mm_42188.1	chr5	112269378	112269578	+	1	NA	NA	NA	-7213	NM_001326590	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.065000	0.646766	89(GTTCTTATAGCC,+,0.00)
mm_46640.1	chr5	108548464	108548664	-	1	NA	NA	NA	1463	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.015000	0.572139	
mm_39868.1	chr5	31056434	31056634	+	1	NA	NA	NA	1754	NM_001289522	69719	Mm.305535	NM_023525	ENSMUSG00000013629	Cad	2410008J01Rik|AU018859|Cpad	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding	0.020000	0.373134	
mm_135750.1	chr16	55934757	55934957	-	1	NA	NA	NA	-9	NM_001159365	74201	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	0.055000	0.582090	
mm_28926.1	chr3	98858211	98858411	-	1	NA	NA	NA	1483	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.010000	0.407960	
mm_94307.1	chr11	4186736	4186936	+	1	NA	NA	NA	3	NM_134023	103724	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.115000	0.731343	
mm_4836.1	chr1	186587409	186587609	+	1	NA	NA	NA	-28828	NR_131158	320449	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.000000	0.512438	
mm_84700.1	chr9	72510863	72511063	-	1	NA	NA	NA	-19004	NM_009359	21778	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	0.010000	0.353234	
mm_164087.1	chr15	7406492	7406692	+	1	NA	NA	NA	-8197	NM_001289498	268780	Mm.203208	NM_178748	ENSMUSG00000042961	Egflam	5930412K08|AU040377	EGF-like, fibronectin type III and laminin G domains	protein-coding	0.005000	0.427861	
mm_171110.1	chr3	135774864	135775064	-	1	NA	NA	NA	-50315	NM_026228	67547	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.050000	0.477612	
mm_150117.1	chr19	29925015	29925215	+	1	NA	NA	NA	1	NM_133775	77125	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	0.030000	0.502488	
mm_143740.1	chr17	81498687	81498887	-	1	NA	NA	NA	239600	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.378109	
mm_132568.1	chr16	38128444	38128644	+	1	NA	NA	NA	-39284	NR_033221	414072	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.005000	0.348259	
mm_94590.1	chr11	11764980	11765180	+	1	NA	NA	NA	43882	NM_021891	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.000000	0.238806	
mm_143483.1	chr17	71268526	71268726	-	1	NA	NA	NA	42339	NM_145158	246707	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.005000	0.492537	
mm_58166.1	chr6	142571413	142571613	-	1	NA	NA	NA	101	NM_001330363	16523	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding	0.065000	0.726368	
mm_10076.1	chr1	195131275	195131475	-	1	NA	NA	NA	195	NM_013499	12946	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	0.040000	0.512438	
mm_65845.1	chr7	29248300	29248500	-	1	NA	NA	NA	67	NM_028179	72275	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0.040000	0.611940	
mm_122291.1	chr14	34555380	34555580	-	1	NA	NA	NA	-32679	NM_030062	78243	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	0.030000	0.646766	
mm_150307.1	chr19	34570587	34570787	+	1	NA	NA	NA	-12842	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.000000	0.358209	
mm_12840.1	chr2	82053285	82053485	+	1	NA	NA	NA	-273	NM_175513	241514	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding	0.120000	0.711443	
mm_26843.1	chr3	14766400	14766600	-	1	NA	NA	NA	11960	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.010000	0.467662	
mm_161432.1	chr15	57477462	57477662	-	1	NA	NA	NA	63	NM_172378	210463	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding	0.010000	0.378109	
mm_125516.1	chr15	57694569	57694769	+	1	NA	NA	NA	2	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.045000	0.407960	
mm_87789.1	chr10	60297597	60297797	+	1	NA	NA	NA	13236	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.020000	0.323383	
mm_14112.1	chr2	125838353	125838553	+	1	NA	NA	NA	20629	NM_009939	12848	Mm.3596	NM_009939	ENSMUSG00000027206	Cops2	AI315723|C85265|Csn2|Sgn2|TRIP-15|Trip15	COP9 signalosome subunit 2	protein-coding	0.005000	0.303483	
mm_158384.1	chrX	136085100	136085300	-	1	NA	NA	NA	55	NM_001024141	245610	Mm.336244	NM_001024141	ENSMUSG00000057000	Nxf3	Gm384	nuclear RNA export factor 3	protein-coding	0.025000	0.497512	
mm_44430.1	chr5	20991891	20992091	-	1	NA	NA	NA	-40169	NM_001080977	242860	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0.010000	0.502488	
mm_154209.1	chr19	59076173	59076373	-	1	NA	NA	NA	-204	NM_001114312	71653	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Kiaa1598|Shootin1|mKIAA1598	shootin 1	protein-coding	0.020000	0.572139	
mm_102936.1	chr11	69601043	69601243	-	1	NA	NA	NA	4817	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.005000	0.517413	
mm_119326.1	chr14	38117597	38117797	+	1	NA	NA	NA	-780605	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA	0.030000	0.502488	-31(GCATTTAAAAAG,-,0.00)
mm_97702.1	chr11	80177838	80178038	+	1	NA	NA	NA	-5934	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.010000	0.567164	
mm_68080.1	chr7	101870539	101870739	-	1	NA	NA	NA	149	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.010000	0.547264	
mm_11171.1	chr2	28562418	28562618	+	1	NA	NA	NA	885	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.010000	0.502488	
mm_59805.1	chr7	29155556	29155756	+	1	NA	NA	NA	554	NM_001146023	73833	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	0.110000	0.711443	
mm_41082.1	chr5	87677755	87677955	+	1	NA	NA	NA	11647	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.238806	
mm_140740.1	chr17	15826456	15826656	-	1	NA	NA	NA	30	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.080000	0.686567	
mm_164753.1	chr17	81738339	81738539	-	1	NA	NA	NA	-52	NM_011406	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.030000	0.522388	
mm_115664.1	chr13	12464837	12465037	-	1	NA	NA	NA	-3199	NM_001291057	56048	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.005000	0.373134	
mm_76688.1	chr8	94098412	94098612	-	1	NA	NA	NA	299	NM_026116	67378	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	0.115000	0.666667	
mm_60743.1	chr7	45448804	45449004	+	1	NA	NA	NA	10982	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.015000	0.502488	
mm_165842.1	chr3	159495383	159495583	+	1	NA	NA	NA	50	NM_001172093	76131	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	0.070000	0.592040	
mm_110923.1	chr12	76369076	76369276	-	1	NA	NA	NA	288	NM_001172104	109929	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0.145000	0.746269	
mm_103214.1	chr11	70654533	70654733	-	1	NA	NA	NA	17	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.090000	0.726368	
mm_116005.1	chr13	24603798	24603998	-	1	NA	NA	NA	869	NR_024599	76024	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347|OTTMUSG00000000601|OTTMUSG00000000602	X-linked lymphocyte-regulated 5 pseudogene	pseudo	0.025000	0.552239	
mm_10220.1	chr2	5951479	5951679	+	1	NA	NA	NA	110	NM_001081132	326622	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	0.075000	0.676617	
mm_109740.1	chr12	117250785	117250985	+	1	NA	NA	NA	68	NR_029563	387171		NR_029563	ENSMUSG00000065538	Mir153	Mirn153|mir-153|mmu-mir-153	microRNA 153	ncRNA	0.030000	0.507463	
mm_59941.1	chr7	30425122	30425322	+	1	NA	NA	NA	1918	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.010000	0.557214	
mm_164525.1	chr17	4196824	4197024	-	1	NA	NA	NA	-74822	NR_045462	78043	Mm.398313	NR_045462		4930548J01Rik	1700113K09Rik	RIKEN cDNA 4930548J01 gene	ncRNA	0.015000	0.477612	
mm_110047.1	chr12	17544496	17544696	-	1	NA	NA	NA	-277	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.055000	0.626866	
mm_129048.1	chr15	75315159	75315359	-	1	NA	NA	NA	46838	NM_008530	17071	Mm.377095	NM_008530	ENSMUSG00000022583	Ly6f	-	lymphocyte antigen 6 complex, locus F	protein-coding	0.000000	0.517413	
mm_128772.1	chr15	66560976	66561176	-	1	NA	NA	NA	-30	NM_172514	213068	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	0.020000	0.457711	
mm_105758.1	chr11	109473641	109473841	-	1	NA	NA	NA	-145	NM_001029842	104681	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.080000	0.661692	
mm_131104.1	chr16	5007442	5007642	+	1	NA	NA	NA	226	NR_045596	432995	Mm.271618	NM_001253796	ENSMUSG00000096215	Smim22	EG432995|Gm5480	small integral membrane protein 22	protein-coding	0.010000	0.616915	
mm_130092.1	chr15	89416561	89416761	-	1	NA	NA	NA	-6158	NM_001162880	75459	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	0.010000	0.457711	
mm_4262.1	chr1	171437500	171437700	+	1	NA	NA	NA	39	NM_172647	16456	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	0.080000	0.621891	
mm_56625.1	chr6	112737290	112737490	-	1	NA	NA	NA	-40720	NM_001167730	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.010000	0.402985	
mm_56977.1	chr6	120294796	120294996	-	1	NA	NA	NA	-337	NM_198884	330406	Mm.321840	NM_198884	ENSMUSG00000041372	B4galnt3	AB114826|B4GalNAcT3|C330047A21	beta-1,4-N-acetyl-galactosaminyl transferase 3	protein-coding	0.055000	0.671642	
mm_11090.1	chr2	27886353	27886553	+	1	NA	NA	NA	28	NM_015734	12831	Mm.7281	NM_015734	ENSMUSG00000026837	Col5a1	AI413331	collagen, type V, alpha 1	protein-coding	0.095000	0.721393	
mm_47681.1	chr5	128952957	128953157	-	1	NA	NA	NA	429	NM_001081388	231760	Mm.233996	NM_001081388	ENSMUSG00000029420	Rimbp2	A930033C01Rik|mKIAA0318	RIMS binding protein 2	protein-coding	0.015000	0.567164	
mm_170596.1	chr19	5802139	5802339	-	1	NA	NA	NA	433	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.035000	0.363184	
mm_171822.1	chr5	142401373	142401573	+	1	NA	NA	NA	-24	NM_199068	17425	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf	forkhead box K1	protein-coding	0.185000	0.796020	
mm_45574.1	chr5	73630223	73630423	-	1	NA	NA	NA	2098	NM_153568	231296	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	0.005000	0.492537	
mm_92622.1	chr10	80260824	80261024	-	1	NA	NA	NA	88	NM_001347119	14431	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0.105000	0.731343	
mm_132394.1	chr16	35000626	35000826	+	1	NA	NA	NA	-21695	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.025000	0.442786	-100(AGCTAGAAAAGG,-,0.00)
mm_124832.1	chr15	9186168	9186368	+	1	NA	NA	NA	-30843	NM_001285980	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.000000	0.318408	76(TCTTTTATATGG,+,0.00)
mm_105508.1	chr11	106199649	106199849	-	1	NA	NA	NA	-6146	NM_001252449	72149	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	0.010000	0.452736	
mm_25523.1	chr3	114094469	114094669	+	1	NA	NA	NA	64029	NM_007729	12814	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding	0.005000	0.398010	-4(GACTATAAAGAG,-,0.00)
mm_23427.1	chr3	59005373	59005573	+	1	NA	NA	NA	-1505	NM_177855	329650	Mm.240059	NM_177855	ENSMUSG00000056476	Med12l	A130035F20|A630079M02|AU044581|TRALPUSH	mediator complex subunit 12-like	protein-coding	0.080000	0.676617	
mm_83266.1	chr9	42472131	42472331	-	1	NA	NA	NA	-5	NM_173038	272589	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0.095000	0.686567	
mm_78956.1	chr9	45138809	45139009	+	1	NA	NA	NA	-133	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.095000	0.726368	
mm_34103.1	chr4	139130246	139130446	+	1	NA	NA	NA	691	NR_033745	433771	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	0.080000	0.616915	
mm_53972.1	chr6	6216974	6217174	-	1	NA	NA	NA	99	NM_015829	50799	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	0.110000	0.716418	
mm_25017.1	chr3	98013425	98013625	+	1	NA	NA	NA	-13	NM_010928	18129	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.150000	0.776119	
mm_146870.1	chr18	25168804	25169004	-	1	NA	NA	NA	-27	NM_001004361	66648	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.140000	0.791045	
mm_53128.1	chr6	125145122	125145322	+	1	NA	NA	NA	-2	NR_126495	320678	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	0.035000	0.582090	
mm_92373.1	chr10	76237745	76237945	-	1	NA	NA	NA	20	NR_126571	15468	Mm.32020	NM_133182	ENSMUSG00000020230	Prmt2	AI504737|Hrmt1l1	protein arginine N-methyltransferase 2	protein-coding	0.080000	0.621891	
mm_151657.1	chr19	4125726	4125926	-	1	NA	NA	NA	32	NM_016666	11632	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.080000	0.646766	
mm_171539.1	chr4	146971857	146972057	+	1	NA	NA	NA	-49893	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.020000	0.522388	
mm_65918.1	chr7	30198765	30198965	-	1	NA	NA	NA	-3817	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.010000	0.507463	
mm_16353.1	chr2	174415743	174415943	+	1	NA	NA	NA	39	NM_020580	57314	Mm.271709	NM_020580	ENSMUSG00000016253	Nelfcd	2410003I03Rik|C77797|Th1|Th1l	negative elongation factor complex member C/D, Th1l	protein-coding	0.095000	0.626866	
mm_126642.1	chr15	83779916	83780116	+	1	NA	NA	NA	-7	NM_172610	223726	Mm.36395	NM_172610	ENSMUSG00000041708	Mpped1	6230403M19|AW456965|D15Bwg0669e	metallophosphoesterase domain containing 1	protein-coding	0.155000	0.845771	
mm_111626.1	chr12	102435752	102435952	-	1	NA	NA	NA	3961	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.000000	0.437811	
mm_69691.1	chr7	139992411	139992611	-	1	NA	NA	NA	51	NM_007403	11501	Mm.15969	NM_007403	ENSMUSG00000025473	Adam8	ADAM 8|CD156|CD156a|E430039A18Rik|MS2	a disintegrin and metallopeptidase domain 8	protein-coding	0.030000	0.552239	
mm_77767.1	chr9	3004706	3004906	+	1	NA	NA	NA	33937	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.020000	0.348259	
mm_133188.1	chr16	72663483	72663683	+	1	NA	NA	NA	434	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.080000	0.691542	
mm_163864.1	chr14	19418826	19419026	+	1	NA	NA	NA	183661	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.353234	
mm_132865.1	chr16	48598785	48598985	+	1	NA	NA	NA	167648	NM_010816	17450	Mm.250060	NM_010816	ENSMUSG00000022652	Morc1	Morc	microrchidia 1	protein-coding	0.005000	0.358209	
mm_142988.1	chr17	56287879	56288079	-	1	NA	NA	NA	2532	NM_025836	66905	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	0.010000	0.601990	
mm_4112.1	chr1	167688527	167688727	+	1	NA	NA	NA	-931	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding	0.110000	0.746269	
mm_26196.1	chr3	138526327	138526527	+	1	NA	NA	NA	6	NR_035481	100316706		NR_035481	ENSMUSG00000088373	Mir1956	mir-1956|mmu-mir-1956	microRNA 1956	ncRNA	0.055000	0.532338	
mm_65995.1	chr7	30554577	30554777	-	1	NA	NA	NA	1375	NM_001012401	243912	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	0.040000	0.587065	-18(GGCTTTTAAAAG,-,0.00),-17(GCTTTTAAAAGA,+,0.00),-17(GCTTTTAAAAGA,-,0.00),-16(CTTTTAAAAGAG,+,0.00),-3(GCCTAAAGAGGC,+,0.00)
mm_13295.1	chr2	102039496	102039696	+	1	NA	NA	NA	146864	NM_178886	241576	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.005000	0.497512	
mm_79228.1	chr9	50479026	50479226	+	1	NA	NA	NA	-15399	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.020000	0.517413	
mm_73723.1	chr8	112569742	112569942	+	1	NA	NA	NA	-201	NM_130457	170571	Mm.209232	NM_130457	ENSMUSG00000031772	Cntnap4	Caspr4|E130114F09Rik	contactin associated protein-like 4	protein-coding	0.020000	0.542289	
mm_123187.1	chr14	57848992	57849192	-	1	NA	NA	NA	22853	NM_026401	67840	Mm.319530	NM_026401	ENSMUSG00000021967	Mrpl57	2610025P17Rik|AV005697|Mrp63	mitochondrial ribosomal protein L57	protein-coding	0.005000	0.398010	
mm_117391.1	chr13	73603818	73604018	-	1	NA	NA	NA	-84	NM_146047	218335	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	0.110000	0.646766	75(CTTCTTAAGGCC,+,0.00)
mm_94315.1	chr11	4232906	4233106	+	1	NA	NA	NA	-3779	NM_001013365	18413	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.015000	0.562189	
mm_19620.1	chr2	102812522	102812722	-	1	NA	NA	NA	89043	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.000000	0.318408	
mm_5890.1	chr1	54250497	54250697	-	1	NA	NA	NA	-86	NM_030025	78016	Mm.67455	NM_030025	ENSMUSG00000025983	Ccdc150	4930511H11Rik	coiled-coil domain containing 150	protein-coding	0.060000	0.567164	
mm_155684.1	chrX	93675319	93675519	+	1	NA	NA	NA	307	NM_211138	236899	Mm.166467	NM_177546	ENSMUSG00000035246	Pcyt1b	AW045697|CTTbeta	phosphate cytidylyltransferase 1, choline, beta isoform	protein-coding	0.010000	0.502488	
mm_76101.1	chr8	80394960	80395160	-	1	NA	NA	NA	-98985	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.015000	0.467662	
mm_4909.1	chr1	190170227	190170427	+	1	NA	NA	NA	353	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding	0.060000	0.577114	
mm_50145.1	chr6	41543475	41543675	+	1	NA	NA	NA	21799	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.060000	0.641791	
mm_33215.1	chr4	126609838	126610038	+	1	NA	NA	NA	84	NM_001145950	230757	Mm.296838	NM_001013755	ENSMUSG00000073755	5730409E04Rik	7530403E16Rik|AI849033	RIKEN cDNA 5730409E04Rik gene	protein-coding	0.100000	0.731343	
mm_54435.1	chr6	34176960	34177160	-	1	NA	NA	NA	-6	NM_021435	58246	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0.075000	0.587065	
mm_101019.1	chr11	8575491	8575691	-	1	NA	NA	NA	88944	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.005000	0.482587	
mm_37202.1	chr4	117871230	117871430	-	1	NA	NA	NA	1140	NM_001034876	381546	Mm.440118	NM_001034876	ENSMUSG00000078588	Ccdc24	Gm1028	coiled-coil domain containing 24	protein-coding	0.000000	0.487562	
mm_128446.1	chr15	50763306	50763506	-	1	NA	NA	NA	125643	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.010000	0.507463	
mm_120067.1	chr14	56929066	56929266	+	1	NA	NA	NA	41371	NM_029498	76007	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.000000	0.328358	
mm_170877.1	chr2	20899951	20900151	+	1	NA	NA	NA	67670	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.080000	0.527363	46(AACTTTAAATGG,-,0.00)
mm_93984.1	chr10	127370439	127370639	-	1	NA	NA	NA	9	NM_010565	16325	Mm.2594	NM_010565	ENSMUSG00000025405	Inhbc	-	inhibin beta-C	protein-coding	0.020000	0.532338	
mm_65651.1	chr7	28129224	28129424	-	1	NA	NA	NA	-142	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.005000	0.537313	
mm_75102.1	chr8	34146054	34146254	-	1	NA	NA	NA	585	NM_026609	68192	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	0.015000	0.417910	
mm_124196.1	chr14	98169136	98169336	-	1	NA	NA	NA	529	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.075000	0.646766	-87(CCTTATATGTGA,+,0.00)
mm_94887.1	chr11	27572883	27573083	+	1	NA	NA	NA	787875	NR_002890	654472	Mm.347777	NR_002890		Gm12070	OTTMUSG00000005300	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.000000	0.248756	
mm_90578.1	chr10	128254091	128254291	+	1	NA	NA	NA	60	NM_133996	28194	Mm.439846	NM_133996	ENSMUSG00000051716	Apon	AI195275|D10Ucla2	apolipoprotein N	protein-coding	0.005000	0.492537	
mm_103865.1	chr11	83462910	83463110	-	1	NA	NA	NA	30	NM_172797	118453	Mm.264648	NM_080453	ENSMUSG00000020682	Mmp28	D130023P12	matrix metallopeptidase 28 (epilysin)	protein-coding	0.110000	0.751244	
mm_99528.1	chr11	103170901	103171101	+	1	NA	NA	NA	-137	NM_001077698	57778	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.130000	0.781095	
mm_127840.1	chr15	6874192	6874392	-	1	NA	NA	NA	21	NM_011019	18414	Mm.10760	NM_011019	ENSMUSG00000022146	Osmr	OSMRB	oncostatin M receptor	protein-coding	0.100000	0.686567	
mm_40076.1	chr5	34336890	34337090	+	1	NA	NA	NA	58	NM_001304270	19822	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0.090000	0.626866	
mm_159977.1	chr6	113127689	113127889	+	1	NA	NA	NA	22854	NM_173005	72895	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0.000000	0.368159	
mm_89198.1	chr10	86348049	86348249	+	1	NA	NA	NA	47737	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.020000	0.452736	
mm_86943.1	chr10	24596348	24596548	+	1	NA	NA	NA	1006	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.050000	0.626866	
mm_169712.1	chr15	76199632	76199832	-	1	NA	NA	NA	103	NM_201391	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.035000	0.646766	
mm_77964.1	chr9	7764085	7764285	+	1	NA	NA	NA	108	NM_133739	71929	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0.125000	0.751244	
mm_7976.1	chr1	134079017	134079217	-	1	NA	NA	NA	38	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.095000	0.661692	
mm_75356.1	chr8	45261906	45262106	-	1	NA	NA	NA	25	NM_028066	109821	Mm.33326	NM_028066	ENSMUSG00000031645	F11	1600027G01Rik|AI503996|Cf11|FXI|PTA	coagulation factor XI	protein-coding	0.030000	0.437811	
mm_121302.1	chr14	105681883	105682083	+	1	NA	NA	NA	-58213	NR_105814	102465207		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	0.060000	0.582090	
mm_163548.1	chr13	21780351	21780551	-	1	NA	NA	NA	174	NM_020034	56702	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	0.080000	0.626866	77(GCCCTTAAGAAG,-,0.00)
mm_125318.1	chr15	38237800	38238000	+	1	NA	NA	NA	18697	NM_008757	18285	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0.030000	0.537313	
mm_19713.1	chr2	104006647	104006847	-	1	NA	NA	NA	-21052	NM_020593	57443	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	0.005000	0.417910	
mm_136226.1	chr16	90259439	90259639	-	1	NA	NA	NA	24964	NM_178923	224432	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.000000	0.422886	
mm_102932.1	chr11	69600859	69601059	-	1	NA	NA	NA	5001	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.025000	0.492537	
mm_2145.1	chr1	88095485	88095685	+	1	NA	NA	NA	584	NM_201642	394432	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	0.020000	0.437811	
mm_72188.1	chr8	72491729	72491929	+	1	NA	NA	NA	785	NM_177766	270066	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	0.020000	0.552239	
mm_5851.1	chr1	53187516	53187716	-	1	NA	NA	NA	1	NM_027070	69397	Mm.307084	NM_027070	ENSMUSG00000060715	1700019A02Rik	-	RIKEN cDNA 1700019A02 gene	protein-coding	0.035000	0.616915	
mm_81252.1	chr9	107982879	107983079	+	1	NA	NA	NA	2937	NM_026597	68176	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0.020000	0.636816	
mm_67377.1	chr7	79841989	79842189	-	1	NA	NA	NA	263	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.035000	0.557214	
mm_20737.1	chr2	137116347	137116547	-	1	NA	NA	NA	73	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.080000	0.552239	
mm_56362.1	chr6	93912409	93912609	-	1	NA	NA	NA	454	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.025000	0.537313	56(CACTTTTAAAGG,-,0.00),57(ACTTTTAAAGGG,+,0.00),58(CTTTTAAAGGGG,+,0.00)
mm_32470.1	chr4	107706978	107707178	+	1	NA	NA	NA	-22916	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.015000	0.542289	
mm_16092.1	chr2	168962054	168962254	+	1	NA	NA	NA	-6567	NM_009564	22722	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	0.005000	0.537313	
mm_85400.1	chr9	103364852	103365052	-	1	NA	NA	NA	27	NM_001134427	321022	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.170000	0.840796	
mm_48486.1	chr5	142509559	142509759	-	1	NA	NA	NA	20417	NM_019943	56522	Mm.441372	NM_019943	ENSMUSG00000074817	Papolb	PAP|Paplob|Papola-ps|Papt|Plap-ps|Tpap	poly (A) polymerase beta (testis specific)	protein-coding	0.020000	0.661692	
mm_104988.1	chr11	100265882	100266082	-	1	NA	NA	NA	3889	NM_212483	68239	Mm.158190	NM_212483	ENSMUSG00000053654	Krt42	2410039E07Rik|K17n|Ka22|ecat6	keratin 42	protein-coding	0.025000	0.512438	
mm_156134.1	chrX	123103459	123103659	+	1	NA	NA	NA	36	NM_028426	73061	Mm.292979	NM_028426	ENSMUSG00000079450	Cldn34c1	3110007F17Rik	claudin 34C1	protein-coding	0.090000	0.671642	
mm_152085.1	chr19	6906786	6906986	-	1	NA	NA	NA	2759	NM_012021	54683	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.020000	0.601990	
mm_148258.1	chr18	80860844	80861044	-	1	NA	NA	NA	73114	NM_001201569	50771	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	0.010000	0.472637	
mm_129336.1	chr15	77836068	77836268	-	1	NA	NA	NA	6007	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.010000	0.577114	-33(CTCTTTAAAAGG,-,0.00),-32(TCTTTAAAAGGG,+,0.00)
mm_43231.1	chr5	129918459	129918659	+	1	NA	NA	NA	10019	NM_026916	69034	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	0.055000	0.597015	
mm_139018.1	chr17	46030542	46030742	+	1	NA	NA	NA	1735	NM_001287058	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.140000	0.776119	
mm_3763.1	chr1	156067733	156067933	+	1	NA	NA	NA	26972	NM_022329	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.000000	0.358209	69(ACCTCTTAAAAG,-,0.00),71(CTCTTAAAAGTC,+,0.00)
mm_16830.1	chr2	11492530	11492730	-	1	NA	NA	NA	9460	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.025000	0.512438	
mm_6535.1	chr1	74900878	74901078	-	1	NA	NA	NA	-257	NR_029876	723900		NR_029876	ENSMUSG00000065616	Mir375	Mirn375|mir-375|mmu-mir-375	microRNA 375	ncRNA	0.050000	0.651741	
mm_55326.1	chr6	55679524	55679724	-	1	NA	NA	NA	1639	NM_009717	11922	Mm.5106	NM_009717	ENSMUSG00000037984	Neurod6	Atoh2|Math-2|Math2|Nex|Nex1m|bHLHa2	neurogenic differentiation 6	protein-coding	0.020000	0.378109	
mm_24868.1	chr3	95937812	95938012	+	1	NA	NA	NA	8655	NM_023210	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.025000	0.527363	
mm_124243.1	chr14	101572932	101573132	-	1	NA	NA	NA	36159	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.010000	0.472637	
mm_69735.1	chr7	140882162	140882362	-	1	NA	NA	NA	47	NM_022433	64384	Mm.29760	NM_022433	ENSMUSG00000025486	Sirt3	2310003L23Rik|AI848213|Sir2l3	sirtuin 3	protein-coding	0.060000	0.587065	
mm_2639.1	chr1	124305051	124305251	+	1	NA	NA	NA	-259592	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.278607	
mm_66036.1	chr7	30649904	30650104	-	1	NA	NA	NA	224	NM_133693	68035	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	0.080000	0.656716	
mm_903.1	chr1	53823618	53823818	+	1	NA	NA	NA	-25706	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.015000	0.462687	
mm_54000.1	chr6	7692760	7692960	-	1	NA	NA	NA	322	NM_012055	27053	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0.070000	0.547264	
mm_3843.1	chr1	160044577	160044777	+	1	NA	NA	NA	297	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.050000	0.631841	
mm_13458.1	chr2	105674314	105674514	+	1	NA	NA	NA	-1330	NM_001244200	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.035000	0.552239	
mm_9922.1	chr1	189679483	189679683	-	1	NA	NA	NA	8503	NM_001081363	108000	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0.005000	0.482587	
mm_123007.1	chr14	54993682	54993882	-	1	NA	NA	NA	767	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.025000	0.522388	
mm_168211.1	chr10	75860100	75860300	-	1	NA	NA	NA	50	NM_010798	17319	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor	protein-coding	0.095000	0.651741	
mm_7036.1	chr1	87100467	87100667	-	1	NA	NA	NA	1039	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.035000	0.577114	
mm_162293.1	chr1	31142348	31142548	+	1	NA	NA	NA	-33987	NM_153601	266744	Mm.389093	NM_153601	ENSMUSG00000050217	Lgsn	Gluld1|Lgs|lengsin	lengsin, lens protein with glutamine synthetase domain	protein-coding	0.020000	0.452736	
mm_103742.1	chr11	80139856	80140056	-	1	NA	NA	NA	2197	NM_183275	68550	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0.020000	0.447761	
mm_121035.1	chr14	79890998	79891198	+	1	NA	NA	NA	-21922	NR_033535	100038734	Mm.387484	NR_033535		Gm10845	ENSMUSG00000075496	predicted gene 10845	ncRNA	0.015000	0.467662	
mm_148509.1	chr19	4214324	4214524	+	1	NA	NA	NA	35	NM_001310039	56708	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	0.100000	0.661692	-33(GATTATTAAAGC,-,0.00)
mm_173112.1	chrX	158870511	158870711	+	1	NA	NA	NA	-385171	NM_148945	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	0.010000	0.507463	
mm_52662.1	chr6	117900310	117900510	+	1	NA	NA	NA	70	NM_001166432	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.020000	0.507463	
mm_83805.1	chr9	53404437	53404637	-	1	NA	NA	NA	-749	NM_029247	75311	Mm.26078	NM_029247	ENSMUSG00000005131	4930550C14Rik	AU017961	RIKEN cDNA 4930550C14 gene	protein-coding	0.010000	0.477612	
mm_64734.1	chr7	4724367	4724567	-	1	NA	NA	NA	615	NM_001142792	330460	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	0.015000	0.472637	
mm_140763.1	chr17	17624377	17624577	-	1	NA	NA	NA	12	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.105000	0.681592	
mm_80204.1	chr9	72438426	72438626	+	1	NA	NA	NA	-3	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.075000	0.601990	
mm_168284.1	chr11	100493356	100493556	-	1	NA	NA	NA	-14976	NR_130343	102465671		NR_130343	ENSMUSG00000104854	Mir7116	mmu-mir-7116	microRNA 7116	ncRNA	0.025000	0.467662	
mm_172405.1	chr7	145340851	145341051	-	1	NA	NA	NA	26116	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	0.010000	0.472637	
mm_41281.1	chr5	90367480	90367680	+	1	NA	NA	NA	583	NR_045618	791294	Mm.30508	NR_045618	ENSMUSG00000054945	Gm9958	ENSMUSG00000054945	predicted gene 9958	ncRNA	0.010000	0.333333	
mm_105713.1	chr11	108343788	108343988	-	1	NA	NA	NA	0	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.135000	0.751244	
mm_69607.1	chr7	137194600	137194800	-	1	NA	NA	NA	-39983	NR_045885	100038555	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	ENSMUSG00000073800	predicted gene 10578	ncRNA	0.010000	0.348259	32(TGCCTTAAAAGT,-,0.00),33(GCCTTAAAAGTG,+,0.00)
mm_133825.1	chr16	95831747	95831947	+	1	NA	NA	NA	66866	NR_040485	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.020000	0.502488	
mm_72251.1	chr8	75094080	75094280	+	1	NA	NA	NA	562	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.010000	0.492537	
mm_11111.1	chr2	28193056	28193256	+	1	NA	NA	NA	63	NM_001038614	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.155000	0.781095	
mm_165430.1	chr2	153413709	153413909	+	1	NA	NA	NA	30670	NM_001001986	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.010000	0.442786	54(TGCTCTAAAAAC,-,0.00)
mm_133445.1	chr16	87732555	87732755	+	1	NA	NA	NA	33701	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.010000	0.348259	-7(TTTTTTAAAGCT,+,0.00)
mm_121593.1	chr14	7967620	7967820	-	1	NA	NA	NA	26462	NM_007870	13421	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.010000	0.388060	
mm_75494.1	chr8	50916016	50916216	-	1	NA	NA	NA	548004	NR_046067	100039954	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.085000	0.641791	
mm_61039.1	chr7	49687564	49687764	+	1	NA	NA	NA	-50829	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.005000	0.378109	
mm_70327.1	chr8	4354050	4354250	+	1	NA	NA	NA	4562	NM_009138	20300	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0.020000	0.497512	
mm_44552.1	chr5	24598844	24599044	-	1	NA	NA	NA	3058	NM_025891	66993	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.065000	0.656716	
mm_108358.1	chr12	80721608	80721808	+	1	NA	NA	NA	29107	NM_001177503	217682	Mm.154541	NM_001177503	ENSMUSG00000066438	Plekhd1	3830431G21Rik	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1	protein-coding	0.025000	0.557214	77(CCTTTTAAAAAG,+,0.00),77(CCTTTTAAAAAG,-,0.00)
mm_168436.1	chr1	135729089	135729289	+	1	NA	NA	NA	-8	NM_007791	13007	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.080000	0.651741	
mm_115562.1	chr13	9764353	9764553	-	1	NA	NA	NA	17	NM_001347470	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.160000	0.840796	
mm_115990.1	chr13	24375851	24376051	-	1	NA	NA	NA	-39171	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.010000	0.447761	
mm_63255.1	chr7	126649259	126649459	+	1	NA	NA	NA	50	NM_029339	75565	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	0.115000	0.601990	
mm_112778.1	chr13	20090409	20090609	+	1	NA	NA	NA	2	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.125000	0.686567	
mm_59673.1	chr7	28381189	28381389	+	1	NA	NA	NA	-2061	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.050000	0.577114	
mm_51905.1	chr6	91156700	91156900	+	1	NA	NA	NA	-15	NM_144919	232232	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	0.070000	0.691542	
mm_11956.1	chr2	53015398	53015598	+	1	NA	NA	NA	157630	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.005000	0.323383	
mm_31836.1	chr4	72201212	72201412	+	1	NA	NA	NA	68	NR_027923	68285	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.095000	0.601990	
mm_92706.1	chr10	80754569	80754769	-	1	NA	NA	NA	-537	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.005000	0.378109	
mm_58702.1	chr7	12928184	12928384	+	1	NA	NA	NA	868	NM_029809	381845	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0.130000	0.736318	
mm_151883.1	chr19	5798462	5798662	-	1	NA	NA	NA	-2581	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.010000	0.348259	
mm_148703.1	chr19	5801072	5801272	+	1	NA	NA	NA	1500	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.045000	0.582090	
mm_159651.1	chr4	146251945	146252145	+	1	NA	NA	NA	-18340	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.005000	0.507463	
mm_24436.1	chr3	90587163	90587363	+	1	NA	NA	NA	-2984	NM_001195760	628324	Mm.33816	NM_001195760	ENSMUSG00000094018	S100a2	CaN19|EG628324|S100L	S100 calcium binding protein A2	protein-coding	0.025000	0.606965	
mm_59680.1	chr7	28436029	28436229	+	1	NA	NA	NA	62	NM_175021	233033	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0.205000	0.875622	
mm_94521.1	chr11	9010592	9010792	+	1	NA	NA	NA	499	NM_001303610	15574	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	0.015000	0.477612	
mm_53886.1	chr6	3373482	3373682	-	1	NA	NA	NA	25989	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.000000	0.368159	
mm_55598.1	chr6	71632889	71633089	-	1	NA	NA	NA	-72	NM_001038695	104263	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0.065000	0.582090	
mm_66720.1	chr7	46100613	46100813	-	1	NA	NA	NA	51	NM_001204411	16514	Mm.333863	NM_010602	ENSMUSG00000096146	Kcnj11	Kir6.2|mBIR	potassium inwardly rectifying channel, subfamily J, member 11	protein-coding	0.100000	0.751244	
mm_37834.1	chr4	132048900	132049100	-	1	NA	NA	NA	78	NM_001128606	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.140000	0.761194	
mm_145203.1	chr18	49982680	49982880	+	1	NA	NA	NA	3353	NM_001177759	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.005000	0.532338	
mm_134892.1	chr16	29788098	29788298	-	1	NA	NA	NA	190926	NR_037689	328657	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.000000	0.557214	
mm_80226.1	chr9	72662344	72662544	+	1	NA	NA	NA	97	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.115000	0.731343	
mm_79268.1	chr9	50753218	50753418	+	1	NA	NA	NA	347	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.035000	0.592040	
mm_156466.1	chrX	143518448	143518648	+	1	NA	NA	NA	-43	NM_001195048	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding	0.045000	0.626866	
mm_152654.1	chr19	12792062	12792262	-	1	NA	NA	NA	3961	NR_024093	664779	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0.005000	0.338308	
mm_22373.1	chr2	181155331	181155531	-	1	NA	NA	NA	1584	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.015000	0.577114	
mm_23069.1	chr3	36075814	36076014	+	1	NA	NA	NA	9914	NM_172678	229211	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	0.010000	0.447761	-34(TGGTATTTAAGG,-,0.00),-32(GTATTTAAGGGC,+,0.00)
mm_99473.1	chr11	102436380	102436580	+	1	NA	NA	NA	6158	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.040000	0.567164	
mm_91945.1	chr10	60831510	60831710	-	1	NA	NA	NA	-29	NM_029770	107449	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0.135000	0.786070	
mm_118101.1	chr13	103920254	103920454	-	1	NA	NA	NA	232	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.090000	0.716418	
mm_168870.1	chr12	36157049	36157249	+	1	NA	NA	NA	25	NM_146033	217473	Mm.130422	NM_146033	ENSMUSG00000036188	Ankmy2	AI035571|ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding	0.075000	0.661692	
mm_149332.1	chr19	10845649	10845849	+	1	NA	NA	NA	3205	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.005000	0.417910	
mm_56055.1	chr6	86765326	86765526	-	1	NA	NA	NA	9688	NM_001331120	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.000000	0.412935	
mm_167753.1	chr9	110421193	110421393	-	1	NA	NA	NA	1485	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.000000	0.278607	
mm_77063.1	chr8	109737650	109737850	-	1	NA	NA	NA	-11	NM_001080930	52335	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e|ENSMUSG00000069895	ataxin 1-like	protein-coding	0.125000	0.766169	
mm_140325.1	chr17	86753715	86753915	+	1	NA	NA	NA	-49	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.060000	0.497512	
mm_135872.1	chr16	62811889	62812089	-	1	NA	NA	NA	-2687	NM_026588	68159	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	0.010000	0.388060	
mm_156598.1	chrX	152432591	152432791	+	1	NA	NA	NA	63663	NR_045452	75693	Mm.287381	NR_045451	ENSMUSG00000084885	3010001F23Rik	-	RIKEN cDNA 3010001F23 gene	ncRNA	0.035000	0.452736	
mm_67203.1	chr7	74302496	74302696	-	1	NA	NA	NA	252184	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.020000	0.462687	
mm_74114.1	chr8	123042568	123042768	+	1	NA	NA	NA	93	NR_045268	100503178	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	0.080000	0.626866	
mm_68478.1	chr7	110862867	110863067	-	1	NA	NA	NA	-14	NM_053247	114332	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	0.015000	0.502488	
mm_154924.1	chrX	23705869	23706069	+	1	NA	NA	NA	12918	NM_001305675	72404	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	0.005000	0.333333	-7(ACCTTTAAAAGC,-,0.00),-6(CCTTTAAAAGCC,+,0.00)
mm_31076.1	chr4	41387933	41388133	+	1	NA	NA	NA	39037	NM_023305	67123	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.025000	0.502488	
mm_148374.1	chr19	3134105	3134305	+	1	NA	NA	NA	63498	NR_045304	70011	Mm.393871	NR_045304	ENSMUSG00000100969	1700030N03Rik	1700087C08Rik	RIKEN cDNA 1700030N03 gene	ncRNA	0.000000	0.462687	
mm_111535.1	chr12	100837324	100837524	-	1	NA	NA	NA	58301	NM_145448	217830	Mm.218590	NM_145448	ENSMUSG00000021185	9030617O03Rik	-	RIKEN cDNA 9030617O03 gene	protein-coding	0.015000	0.492537	-85(ACCTTTAAGAGG,-,0.00),-84(CCTTTAAGAGGT,+,0.00)
mm_28696.1	chr3	95538730	95538930	-	1	NA	NA	NA	12044	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.030000	0.452736	
mm_112969.1	chr13	21286805	21287005	+	1	NA	NA	NA	5781	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.005000	0.442786	
mm_64110.1	chr7	141061207	141061407	+	1	NA	NA	NA	33	NM_177897	330671	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.125000	0.731343	
mm_20884.1	chr2	148850872	148851072	-	1	NA	NA	NA	-38	NM_029960	77705	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	0.015000	0.502488	
mm_107621.1	chr12	51377474	51377674	+	1	NA	NA	NA	61	NM_029825	76983	Mm.216511	NM_029825	ENSMUSG00000020952	Scfd1	3110021P21Rik|RA410|STXBP1L2	Sec1 family domain containing 1	protein-coding	0.075000	0.671642	
mm_45532.1	chr5	72752647	72752847	-	1	NA	NA	NA	30	NM_001289494	22165	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.015000	0.462687	
mm_64013.1	chr7	140218231	140218431	+	1	NA	NA	NA	64	NM_172909	244233	Mm.19283	NM_172909	ENSMUSG00000025461	Cd163l1	B430307C05|E430002D04Rik|Scart1	CD163 molecule-like 1	protein-coding	0.010000	0.557214	
mm_2157.1	chr1	88205748	88205948	+	1	NA	NA	NA	-100	NM_008299	15504	Mm.439983	NM_008299	ENSMUSG00000081984	Dnajb3	Hsj3|MSJ-1|Msj1	DnaJ heat shock protein family (Hsp40) member B3	protein-coding	0.060000	0.577114	
mm_158505.1	chrX	142390509	142390709	-	1	NA	NA	NA	-74	NM_019477	50790	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	0.120000	0.726368	
mm_64241.1	chr7	141701331	141701531	+	1	NA	NA	NA	11091	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.011696	0.505814	
mm_56073.1	chr6	86796477	86796677	-	1	NA	NA	NA	-2993	NM_013471	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.020000	0.492537	
mm_114705.1	chr13	83524725	83524925	+	1	NA	NA	NA	82	NM_001347580	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.115000	0.641791	
mm_5142.1	chr1	9746403	9746603	-	1	NA	NA	NA	-1145	NR_040462	73331	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	0.005000	0.412935	
mm_4630.1	chr1	179668093	179668293	+	1	NA	NA	NA	-38	NM_178653	109232	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	0.165000	0.786070	
mm_131798.1	chr16	22899068	22899268	+	1	NA	NA	NA	-4782	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.015000	0.507463	
mm_147747.1	chr18	61176926	61177126	-	1	NA	NA	NA	23	NM_178277	106894	Mm.22574	NM_134134	ENSMUSG00000024622	Hmgxb3	2510002C16Rik|A630042L21Rik|AI413166|mKIAA0194	HMG box domain containing 3	protein-coding	0.140000	0.706468	
mm_104224.1	chr11	88541541	88541741	-	1	NA	NA	NA	-77610	NR_131025	68397	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	0.010000	0.567164	
mm_142471.1	chr17	45612949	45613149	-	1	NA	NA	NA	-10947	NM_001177469	653016	Mm.45676	NM_001177468	ENSMUSG00000079471	Gm7325	EG653016|Esgp	predicted gene 7325	protein-coding	0.020000	0.552239	
mm_90040.1	chr10	115817263	115817463	+	1	NA	NA	NA	79	NM_001168679	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	0.015000	0.363184	
mm_56176.1	chr6	88045068	88045268	-	1	NA	NA	NA	102	NM_001293652	19349	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.110000	0.676617	
mm_132846.1	chr16	46010467	46010667	+	1	NA	NA	NA	-154	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.070000	0.631841	
mm_95238.1	chr11	44617286	44617486	+	1	NA	NA	NA	-714	NM_001290711	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.000000	0.512438	
mm_168417.1	chr1	132291686	132291886	-	1	NA	NA	NA	-6840	NM_144810	213417	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0.010000	0.522388	
mm_74312.1	chr8	126594740	126594940	+	1	NA	NA	NA	-1404	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.100000	0.696517	
mm_113982.1	chr13	52582480	52582680	+	1	NA	NA	NA	-857	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.010000	0.492537	
mm_44956.1	chr5	36696489	36696689	-	1	NA	NA	NA	-568	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.010000	0.467662	
mm_140140.1	chr17	79955419	79955619	+	1	NA	NA	NA	-59396	NM_001286647	56298	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.005000	0.477612	
mm_153300.1	chr19	37957313	37957513	-	1	NA	NA	NA	86164	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.020000	0.492537	49(CCTTTAATAGGA,+,0.00)
mm_33233.1	chr4	127021189	127021389	+	1	NA	NA	NA	-12	NR_045010	71514	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|OTTMUSG00000009329|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.055000	0.532338	-1(TCCTATTTAAGA,-,0.00)
mm_139774.1	chr17	64755472	64755672	+	1	NA	NA	NA	-11539	NR_105051	101202683	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.020000	0.487562	
mm_34710.1	chr4	152116225	152116425	+	1	NA	NA	NA	-18	NM_033042	85030	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0.040000	0.631841	
mm_111739.1	chr12	103865665	103865865	-	1	NA	NA	NA	-2146	NM_009243	20700	Mm.439692	NM_009243	ENSMUSG00000066366	Serpina1a	Aat-2|Aat2|Dom1|PI1|Spi1-1|Spi1-3	serine (or cysteine) peptidase inhibitor, clade A, member 1A	protein-coding	0.005000	0.512438	
mm_105701.1	chr11	108261148	108261348	-	1	NA	NA	NA	82640	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.020000	0.388060	
mm_14701.1	chr2	142570366	142570566	+	1	NA	NA	NA	330998	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.010000	0.407960	-58(TACTCTAAAAAC,-,0.00)
mm_163533.1	chr13	10581458	10581658	+	1	NA	NA	NA	-220755	NM_033269	12671	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.005000	0.363184	
mm_73203.1	chr8	95678145	95678345	+	1	NA	NA	NA	-24792	NM_001195006	234593	Mm.29846	NM_145602	ENSMUSG00000036564	Ndrg4	D8Bwg1337e|Ndr1-rs|Ndr4|R74996|SMAP-8	N-myc downstream regulated gene 4	protein-coding	0.125000	0.716418	-40(TTTTTTAAACCC,+,0.00)
mm_21878.1	chr2	166132592	166132792	-	1	NA	NA	NA	22593	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.040000	0.626866	
mm_36433.1	chr4	82294619	82294819	-	1	NA	NA	NA	211060	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.000000	0.393035	
mm_82324.1	chr9	8042734	8042934	-	1	NA	NA	NA	-11	NM_199017	234912	Mm.172430	NM_199017	ENSMUSG00000053070	9230110C19Rik	-	RIKEN cDNA 9230110C19 gene	protein-coding	0.055000	0.616915	
mm_48221.1	chr5	137624963	137625163	-	1	NA	NA	NA	15	NM_027708	71176	Mm.474695	NM_027708	ENSMUSG00000089984	Fbxo24	4933422D21Rik|Fbx24	F-box protein 24	protein-coding	0.015000	0.626866	
mm_130139.1	chr15	90898368	90898568	-	1	NA	NA	NA	8	NR_033583	20738	Mm.431547	NR_033583		Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.010000	0.527363	
mm_109642.1	chr12	112809178	112809378	+	1	NA	NA	NA	303	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.065000	0.636816	
mm_98090.1	chr11	86593193	86593393	+	1	NA	NA	NA	-9135	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.467662	
mm_142450.1	chr17	45592742	45592942	-	1	NA	NA	NA	-449	NM_022880	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.015000	0.646766	
mm_57377.1	chr6	124812979	124813179	-	1	NA	NA	NA	1217	NM_009415	21991	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.015000	0.507463	
mm_59989.1	chr7	30554754	30554954	+	1	NA	NA	NA	1552	NM_001012401	243912	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	0.025000	0.582090	
mm_165675.1	chr3	90230978	90231178	+	1	NA	NA	NA	-519	NM_206924	23922	Mm.13912	NM_206924	ENSMUSG00000027937	Jtb	Gm622	jumping translocation breakpoint	protein-coding	0.005000	0.343284	
mm_161351.1	chr14	55094685	55094885	+	1	NA	NA	NA	1	NM_153083	105663	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding	0.030000	0.532338	
mm_108688.1	chr12	86891516	86891716	+	1	NA	NA	NA	-6802	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.030000	0.472637	
mm_136427.1	chr16	94290169	94290369	-	1	NA	NA	NA	-2413	NM_139145	110948	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.145000	0.781095	
mm_144253.1	chr18	10920951	10921151	+	1	NA	NA	NA	-131459	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.010000	0.482587	
mm_74274.1	chr8	125013003	125013203	+	1	NA	NA	NA	106	NM_016909	53424	Mm.5248	NM_016909	ENSMUSG00000056820	Tsnax	R74833|Trax	translin-associated factor X	protein-coding	0.150000	0.751244	
mm_93865.1	chr10	123076279	123076479	-	1	NA	NA	NA	126	NM_001163024	67074	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	0.130000	0.761194	
mm_141278.1	chr17	27825941	27826141	-	1	NA	NA	NA	-5499	NM_001271511	224647	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0.010000	0.507463	
mm_73199.1	chr8	95633443	95633643	+	1	NA	NA	NA	-16	NM_030198	78833	Mm.35546	NM_030198	ENSMUSG00000031669	Gins3	2700085M18Rik|AI616142	GINS complex subunit 3 (Psf3 homolog)	protein-coding	0.105000	0.646766	
mm_61809.1	chr7	87246698	87246898	+	1	NA	NA	NA	149	NM_001285833	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	0.080000	0.696517	
mm_17870.1	chr2	34940052	34940252	-	1	NA	NA	NA	21620	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.010000	0.522388	
mm_171840.1	chr5	150491683	150491883	-	1	NA	NA	NA	10436	NR_024513	194292	Mm.300184	NR_024513		Gm5	Gm1812	predicted gene 5	ncRNA	0.020000	0.497512	
mm_31245.1	chr4	44884841	44885041	+	1	NA	NA	NA	-96453	NM_080289	76238	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0.000000	0.283582	
mm_170701.1	chr2	135659565	135659765	+	1	NA	NA	NA	-76445	NR_015544	320684	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.120000	0.686567	
mm_33340.1	chr4	129287556	129287756	+	1	NA	NA	NA	35	NM_023485	68828	Mm.132243	NM_023485	ENSMUSG00000001333	Sync	1110057H03Rik|SNIP4	syncoilin	protein-coding	0.150000	0.756219	
mm_108627.1	chr12	85608198	85608398	+	1	NA	NA	NA	8280	NM_001205053	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.045000	0.597015	
mm_69154.1	chr7	127144434	127144634	-	1	NA	NA	NA	-6711	NM_001037810	20737	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	0.010000	0.507463	
mm_31840.1	chr4	74242375	74242575	+	1	NA	NA	NA	-22	NM_001172095	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.005000	0.422886	
mm_3713.1	chr1	153909083	153909283	+	1	NA	NA	NA	9254	NM_008131	14645	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.015000	0.398010	66(TTTTTTAAAAGC,-,0.00)
mm_133358.1	chr16	84701949	84702149	+	1	NA	NA	NA	-10974	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.025000	0.402985	-34(GGCTTTATAAAT,-,0.00)
mm_62479.1	chr7	101871501	101871701	+	1	NA	NA	NA	-813	NM_001252552	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.015000	0.527363	
mm_38017.1	chr4	133754179	133754379	-	1	NA	NA	NA	-668	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.130000	0.726368	
mm_155536.1	chrX	74303931	74304131	+	1	NA	NA	NA	-981	NM_010273	14567	Mm.205830	NM_010273	ENSMUSG00000015291	Gdi1	GDIA|GDIalpha	guanosine diphosphate (GDP) dissociation inhibitor 1	protein-coding	0.010000	0.472637	
mm_168815.1	chr12	21899101	21899301	-	1	NA	NA	NA	257445	NR_136920	100043416		NM_001004167	ENSMUSG00000093846	Gm4425	EG432637|Gm5433	KRAB-domain protein pseudogene	pseudo	0.110000	0.721393	
mm_5534.1	chr1	38060488	38060688	-	1	NA	NA	NA	62578	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.005000	0.308458	
mm_154685.1	chrX	7922236	7922436	+	1	NA	NA	NA	2514	NM_013892	30052	Mm.4881	NM_013892	ENSMUSG00000039278	Pcsk1n	AI848336|KEP|PEN|PEN19|PEN20|Pan3|SAAS|SAASCT|bLEN|lLEN|proSAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding	0.125000	0.766169	
mm_57055.1	chr6	122486052	122486252	-	1	NA	NA	NA	153	NM_027664	108653	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	0.150000	0.820896	
mm_129042.1	chr15	75111870	75112070	-	1	NA	NA	NA	-21	NM_001099217	100041546	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0.000000	0.507463	
mm_76560.1	chr8	88388662	88388862	-	1	NA	NA	NA	-26571	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.030000	0.582090	
mm_77418.1	chr8	120668029	120668229	-	1	NA	NA	NA	13	NM_001308449	105734727	Mm.473736	NM_001308449	ENSMUSG00000097919	Emc8-1190005i06rik	-	Emc8-1190005I06Rik readthrough	protein-coding	0.160000	0.781095	
mm_10147.1	chr2	4300511	4300711	+	1	NA	NA	NA	-100365	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.025000	0.572139	
mm_49307.1	chr6	18109069	18109269	+	1	NA	NA	NA	-108	NM_023729	74068	Mm.73091	NM_023729	ENSMUSG00000010796	Asz1	4933400N19Rik|Gasz|ORF3	ankyrin repeat, SAM and basic leucine zipper domain containing 1	protein-coding	0.070000	0.592040	77(CCTTTAAGAGAC,+,0.00)
mm_13659.1	chr2	114055179	114055379	+	1	NA	NA	NA	883	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.035000	0.522388	
mm_113570.1	chr13	38345055	38345255	+	1	NA	NA	NA	-561	NM_007556	12161	Mm.385759	NM_007556	ENSMUSG00000039004	Bmp6	D13Wsu115e|Vgr1	bone morphogenetic protein 6	protein-coding	0.130000	0.681592	
mm_163702.1	chr13	104228910	104229110	+	1	NA	NA	NA	-166	NM_172807	238831	Mm.98910	NM_172807	ENSMUSG00000021713	Ppwd1	4632422M10Rik|A330090G21Rik	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding	0.080000	0.626866	
mm_97863.1	chr11	83116860	83117060	+	1	NA	NA	NA	115	NM_011407	20555	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0.015000	0.547264	
mm_106072.1	chr11	116172994	116173194	-	1	NA	NA	NA	-4916	NM_172571	217335	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.000000	0.452736	
mm_109902.1	chr12	7950035	7950235	-	1	NA	NA	NA	-27542	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.393035	
mm_91415.1	chr10	31609744	31609944	-	1	NA	NA	NA	-119	NM_001146349	268291	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.065000	0.582090	
mm_137170.1	chr17	23813343	23813543	+	1	NA	NA	NA	10256	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.005000	0.388060	
mm_122162.1	chr14	31398007	31398207	-	1	NA	NA	NA	19570	NM_001347585	24056	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.015000	0.542289	
mm_109474.1	chr12	111421398	111421598	+	1	NA	NA	NA	4053	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.020000	0.597015	
mm_56794.1	chr6	116647742	116647942	-	1	NA	NA	NA	-1795	NR_106010	102466793		NR_106010	ENSMUSG00000098334	Mir7043	Gm27776|mmu-mir-7043	microRNA 7043	ncRNA	0.035000	0.601990	
mm_33294.1	chr4	128962499	128962699	+	1	NA	NA	NA	-144	NM_001301841	242669	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.085000	0.641791	
mm_78282.1	chr9	22108007	22108207	+	1	NA	NA	NA	5906	NR_106052	102466221		NR_106052	ENSMUSG00000098646	Mir7084	Gm27978|mmu-mir-7084	microRNA 7084	ncRNA	0.035000	0.597015	
mm_102252.1	chr11	55151585	55151785	-	1	NA	NA	NA	21	NM_172258	215332	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0.010000	0.557214	
mm_104554.1	chr11	96800737	96800937	-	1	NA	NA	NA	-2681	NR_033523	629750	Mm.390396	NR_033523		Gm11517	OTTMUSG00000001634	ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene	pseudo	0.015000	0.437811	
mm_94938.1	chr11	29707307	29707507	+	1	NA	NA	NA	-11156	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.015000	0.417910	
mm_117212.1	chr13	64089129	64089329	-	1	NA	NA	NA	-28	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.015000	0.527363	
mm_36929.1	chr4	108301020	108301220	-	1	NA	NA	NA	-30	NM_001033634	414872	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	0.105000	0.726368	
mm_157049.1	chrX	8018370	8018570	-	1	NA	NA	NA	22	NM_027227	69824	Mm.279756	NM_027227	ENSMUSG00000031163	Glod5	2010001H14Rik|AV061890	glyoxalase domain containing 5	protein-coding	0.005000	0.557214	
mm_172602.1	chr8	15519834	15520034	+	1	NA	NA	NA	462281	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.070000	0.492537	79(AACTTTAAATGG,-,0.00)
mm_60547.1	chr7	44480639	44480839	+	1	NA	NA	NA	-3778	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.417910	
mm_153608.1	chr19	43940118	43940318	-	1	NA	NA	NA	-20	NM_028029	71972	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.165000	0.800995	
mm_6710.1	chr1	82287280	82287480	-	1	NA	NA	NA	4059	NM_010570	16367	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.015000	0.592040	
mm_153414.1	chr19	40588359	40588559	-	1	NA	NA	NA	4	NM_019698	56454	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	0.130000	0.681592	
mm_160865.1	chr11	61140751	61140951	+	1	NA	NA	NA	16	NM_021349	57916	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	0.005000	0.537313	
mm_31627.1	chr4	59259945	59260145	+	1	NA	NA	NA	-6	NR_105031	101055769	Mm.421401	NR_105031		Gm12596	OTTMUSG00000007649	predicted gene 12596	ncRNA	0.005000	0.457711	
mm_97713.1	chr11	80179229	80179429	+	1	NA	NA	NA	-4543	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.010000	0.417910	
mm_19405.1	chr2	91649668	91649868	-	1	NA	NA	NA	10	NM_001347175	381410	Mm.330401	NM_001033451	ENSMUSG00000075040	Zfp408	Gm1011	zinc finger protein 408	protein-coding	0.055000	0.542289	
mm_100496.1	chr11	120467714	120467914	+	1	NA	NA	NA	179	NM_001159328	15239	Mm.7919	NM_008244	ENSMUSG00000025793	Hgs	Hgr|Hrs|ZFYVE8|tn	HGF-regulated tyrosine kinase substrate	protein-coding	0.115000	0.721393	
mm_133846.1	chr16	96205723	96205923	+	1	NA	NA	NA	5353	NM_015825	50795	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0.015000	0.497512	-3(GTCTTTTAAGGG,-,0.00),-2(TCTTTTAAGGGA,+,0.00)
mm_17351.1	chr2	26608058	26608258	-	1	NA	NA	NA	-3741	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.020000	0.557214	
mm_135243.1	chr16	37112476	37112676	-	1	NA	NA	NA	100790	NM_001159369	77782	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	0.005000	0.288557	
mm_29008.1	chr3	101604446	101604646	-	1	NA	NA	NA	161	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.125000	0.751244	
mm_55422.1	chr6	65130844	65131044	-	1	NA	NA	NA	13786	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.015000	0.417910	-71(TCTTATAAACTC,+,0.00),-60(CCTTATAGAAGC,+,0.00)
mm_48399.1	chr5	140174707	140174907	-	1	NA	NA	NA	146745	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.000000	0.527363	
mm_40529.1	chr5	57920131	57920331	+	1	NA	NA	NA	202150	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.005000	0.487562	
mm_55826.1	chr6	83115344	83115544	-	1	NA	NA	NA	-62	NM_020619	57377	Mm.28188	NM_020619	ENSMUSG00000030036	Mogs	1810017N02Rik|AI181835|Gcs1	mannosyl-oligosaccharide glucosidase	protein-coding	0.100000	0.656716	
mm_23042.1	chr3	34764093	34764293	+	1	NA	NA	NA	-7882	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA	0.015000	0.557214	
mm_140637.1	chr17	12652575	12652775	-	1	NA	NA	NA	23163	NM_009202	20517	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.045000	0.552239	
mm_114572.1	chr13	75089579	75089779	+	1	NA	NA	NA	-308	NM_013628	18548	Mm.1333	NM_013628	ENSMUSG00000021587	Pcsk1	Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	0.020000	0.447761	
mm_61824.1	chr7	87828384	87828584	+	1	NA	NA	NA	244316	NM_001143834	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0.010000	0.308458	
mm_43200.1	chr5	129020601	129020801	+	1	NA	NA	NA	545	NM_009391	19384	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	0.125000	0.671642	
mm_159156.1	chr2	89609819	89610019	-	1	NA	NA	NA	234	NM_146966	258968	Mm.330384	NM_146966	ENSMUSG00000075081	Olfr1247	MOR231-6	olfactory receptor 1247	protein-coding	0.005000	0.442786	
mm_136953.1	chr17	14945055	14945255	+	1	NA	NA	NA	1971	NM_026451	67912	Mm.390949	NM_026451	ENSMUSG00000050088	1600012H06Rik	-	RIKEN cDNA 1600012H06 gene	protein-coding	0.010000	0.412935	
mm_138771.1	chr17	37175614	37175814	+	1	NA	NA	NA	-18178	NM_023137	24108	Mm.140210	NM_023137	ENSMUSG00000035186	Ubd	FAT10	ubiquitin D	protein-coding	0.015000	0.512438	
mm_115928.1	chr13	23571061	23571261	-	1	NA	NA	NA	59	NM_178187	319166	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	0.040000	0.447761	
mm_137806.1	chr17	30004275	30004475	+	1	NA	NA	NA	-712	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.065000	0.641791	
mm_111816.1	chr12	105685065	105685265	-	1	NA	NA	NA	76	NM_029654	76559	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	0.120000	0.666667	
mm_142331.1	chr17	43504191	43504391	-	1	NA	NA	NA	-1518	NM_008585	17287	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	0.005000	0.417910	
mm_65406.1	chr7	25237625	25237825	-	1	NA	NA	NA	126	NM_001031667	606496	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	0.140000	0.820896	
mm_124764.1	chr15	6664966	6665166	+	1	NA	NA	NA	-43315	NM_030168	78757	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.005000	0.462687	
mm_27404.1	chr3	51334189	51334389	-	1	NA	NA	NA	6355	NM_001291059	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.020000	0.487562	
mm_92660.1	chr10	80417383	80417583	-	1	NA	NA	NA	-10662	NM_025650	66594	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0.030000	0.661692	
mm_134860.1	chr16	28446432	28446632	-	1	NA	NA	NA	-457	NM_001276420	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.170000	0.791045	
mm_40939.1	chr5	76677177	76677377	+	1	NA	NA	NA	85563	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.020000	0.542289	
mm_105877.1	chr11	114924193	114924393	-	1	NA	NA	NA	10093	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.015000	0.547264	16(CCTTAAATAGAT,+,0.00)
mm_50795.1	chr6	54264719	54264919	+	1	NA	NA	NA	-39	NM_001311133	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.025000	0.462687	-33(GCCTTTAAGAAG,-,0.00),-32(CCTTTAAGAAGC,+,0.00),72(TCCTTTAAGGAC,+,0.00)
mm_156897.1	chrX	167207143	167207343	+	1	NA	NA	NA	1975	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.000000	0.427861	
mm_167639.1	chr9	64173299	64173499	+	1	NA	NA	NA	12	NM_024212	67891	Mm.280083	NM_024212	ENSMUSG00000032399	Rpl4	2010004J23Rik	ribosomal protein L4	protein-coding	0.035000	0.547264	
mm_84265.1	chr9	62665936	62666136	-	1	NA	NA	NA	-11819	NM_176922	319480	Mm.34883	NM_176922	ENSMUSG00000032243	Itga11	4732459H24Rik	integrin alpha 11	protein-coding	0.015000	0.497512	
mm_41625.1	chr5	96918258	96918458	+	1	NA	NA	NA	-2914	NR_131152	666266	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0.000000	0.308458	
mm_9481.1	chr1	173437124	173437324	-	1	NA	NA	NA	16620	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.005000	0.467662	
mm_4214.1	chr1	171287946	171288146	+	1	NA	NA	NA	-85	NM_013919	30941	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	0.065000	0.621891	
mm_57128.1	chr6	122600735	122600935	-	1	NA	NA	NA	1609	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.010000	0.462687	
mm_159062.1	chr2	14739608	14739808	+	1	NA	NA	NA	19066	NR_028497	625342	Mm.484784	NR_028497		Gm13315	OTTMUSG00000011384	lactate dehydrogenase A pseudogene	pseudo	0.060000	0.562189	
mm_69007.1	chr7	126702407	126702607	-	1	NA	NA	NA	1713	NM_001301374	12721	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.015000	0.532338	-88(TACCTTAAAAGG,-,0.00),-86(CCTTAAAAGGGC,+,0.00)
mm_24985.1	chr3	96833171	96833371	+	1	NA	NA	NA	597	NM_001146001	59020	Mm.489677	NM_021517	ENSMUSG00000038298	Pdzk1	1700023D20Rik|2610507N21Rik|4921513F16Rik|AI267131|AI314638|AL022680|D3Ertd537e|Pdzd1|mPDZK1	PDZ domain containing 1	protein-coding	0.010000	0.582090	
mm_106717.1	chr12	3834776	3834976	+	1	NA	NA	NA	27368	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.000000	0.572139	-7(GGCTCTTAGAGG,-,0.00)
mm_46955.1	chr5	114970968	114971168	-	1	NA	NA	NA	-6	NM_009327	21405	Mm.332607	NM_009327	ENSMUSG00000029556	Hnf1a	AI323641|HNF1|HNF1-alpha|HNF1[a]|Hnf-1|Hnf1alpha|LFB1|Tcf-1|Tcf1	HNF1 homeobox A	protein-coding	0.025000	0.587065	
mm_80308.1	chr9	74110292	74110492	+	1	NA	NA	NA	58	NM_001033500	546144	Mm.335289	NM_177908	ENSMUSG00000044976	Wdr72	AW558070|D230040E23	WD repeat domain 72	protein-coding	0.045000	0.656716	
mm_88915.1	chr10	81180159	81180359	+	1	NA	NA	NA	1298	NR_028549	100217454		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.060000	0.587065	
mm_101842.1	chr11	48805501	48805701	-	1	NA	NA	NA	2462	NR_028564	100216540		NR_028564	ENSMUSG00000064780	Snord95	-	small nucleolar RNA, C/D box 95	snoRNA	0.005000	0.467662	
mm_148684.1	chr19	5692763	5692963	+	1	NA	NA	NA	3732	NM_022012	26403	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	0.015000	0.592040	
mm_101000.1	chr11	8468458	8468658	-	1	NA	NA	NA	195977	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.035000	0.661692	
mm_18592.1	chr2	66682603	66682803	-	1	NA	NA	NA	-47741	NM_001290675	20274	Mm.440889	NM_018852	ENSMUSG00000075316	Scn9a	Nav1.7|PN1|mKIAA4197	sodium channel, voltage-gated, type IX, alpha	protein-coding	0.005000	0.278607	
mm_94076.1	chr10	128409714	128409914	-	1	NA	NA	NA	-18	NM_027257	69917	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	0.080000	0.696517	
mm_102838.1	chr11	69331996	69332196	-	1	NA	NA	NA	5838	NM_010599	16499	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0.055000	0.562189	
mm_108317.1	chr12	79645723	79645923	+	1	NA	NA	NA	278910	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.015000	0.502488	
mm_153823.1	chr19	46305197	46305397	-	1	NA	NA	NA	-398	NM_019408	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.070000	0.626866	
mm_29679.1	chr3	122984184	122984384	-	1	NA	NA	NA	163	NM_133857	99526	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	0.120000	0.736318	
mm_168902.1	chr12	55080472	55080672	+	1	NA	NA	NA	76	NM_011899	24067	Mm.471968	NM_011899	ENSMUSG00000073079	Srp54a	54kDa|Srp54	signal recognition particle 54A	protein-coding	0.075000	0.616915	
mm_5592.1	chr1	39555910	39556110	-	1	NA	NA	NA	-7170	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.015000	0.502488	-22(CTATTTAGAGCC,+,0.00)
mm_131307.1	chr16	11461736	11461936	+	1	NA	NA	NA	56188	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.020000	0.487562	
mm_151244.1	chr19	53893717	53893917	+	1	NA	NA	NA	1586	NM_011050	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.015000	0.542289	
mm_39808.1	chr5	30627960	30628160	+	1	NA	NA	NA	-19876	NR_049199	100885838		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.000000	0.447761	
mm_141370.1	chr17	29007745	29007945	-	1	NA	NA	NA	92	NM_134115	106504	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0.130000	0.701493	
mm_13042.1	chr2	91089717	91089917	+	1	NA	NA	NA	-6861	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.020000	0.432836	
mm_101319.1	chr11	22858668	22858868	-	1	NA	NA	NA	967	NM_016888	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.040000	0.601990	
mm_121842.1	chr14	20610192	20610392	-	1	NA	NA	NA	8062	NM_030180	78787	Mm.301173	NM_030180	ENSMUSG00000034235	Usp54	4930429G18Rik|AI115571|C030002J06Rik	ubiquitin specific peptidase 54	protein-coding	0.005000	0.502488	
mm_82211.1	chr9	124142216	124142416	+	1	NA	NA	NA	20773	NM_009917	12774	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0.005000	0.472637	-26(GACCATAAAAGG,-,0.00),-24(CCATAAAAGGGG,+,0.00)
mm_68669.1	chr7	118856267	118856467	-	1	NA	NA	NA	-369	NM_023197	66356	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0.025000	0.472637	
mm_63935.1	chr7	139552928	139553128	+	1	NA	NA	NA	29769	NM_183248	14912	Mm.28308	NM_183248	ENSMUSG00000041309	Nkx6-2	Gtx|Nkx6.2	NK6 homeobox 2	protein-coding	0.000000	0.437811	
mm_92003.1	chr10	62327529	62327729	-	1	NA	NA	NA	12792	NM_001146100	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.030000	0.611940	
mm_82290.1	chr9	7763655	7763855	-	1	NA	NA	NA	-322	NM_133739	71929	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0.060000	0.557214	
mm_104933.1	chr11	100085346	100085546	-	1	NA	NA	NA	2780	NM_001159374	16670	Mm.4161	NM_010665	ENSMUSG00000046095	Krt32	Ha3|Hka2|K32|Krt1-2|Krtha2	keratin 32	protein-coding	0.000000	0.492537	
mm_49258.1	chr6	17463679	17463879	+	1	NA	NA	NA	-178	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.085000	0.706468	
mm_153231.1	chr19	34879359	34879559	-	1	NA	NA	NA	-4	NM_001114339	75735	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	0.030000	0.522388	
mm_46210.1	chr5	98034980	98035180	-	1	NA	NA	NA	-4118	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.005000	0.393035	74(CTTTTTAGACCT,+,0.00)
mm_68692.1	chr7	119523368	119523568	-	1	NA	NA	NA	14	NM_027943	71830	Mm.84631	NM_027943	ENSMUSG00000030968	Pdilt	1700007B13Rik	protein disulfide isomerase-like, testis expressed	protein-coding	0.000000	0.532338	
mm_95325.1	chr11	46561905	46562105	+	1	NA	NA	NA	-9508	NM_001025435	407814	Mm.271088	NM_001025435	ENSMUSG00000046974	BC053393	-	cDNA sequence BC053393	protein-coding	0.030000	0.412935	
mm_158367.1	chrX	134973042	134973242	-	1	NA	NA	NA	-8388	NM_031259	83454	Mm.103155	NM_031259	ENSMUSG00000009941	Nxf2	4930455N06Rik|Nxf-b	nuclear RNA export factor 2	protein-coding	0.010000	0.437811	
mm_157742.1	chrX	73039595	73039795	-	1	NA	NA	NA	-2592	NM_001100461	385377	Mm.327861	NM_001100461	ENSMUSG00000050424	Pnma5	mKIAA1934	paraneoplastic antigen family 5	protein-coding	0.040000	0.567164	-35(GCATATATAAGA,-,0.00)
mm_114341.1	chr13	60762375	60762575	+	1	NA	NA	NA	23889	NM_199148	218275	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.015000	0.442786	
mm_103431.1	chr11	75764597	75764797	-	1	NA	NA	NA	-31112	NR_136933	102641247	Mm.411386	NR_136932		Gm12339	OTTMUSG00000006218	predicted gene 12339	ncRNA	0.010000	0.447761	
mm_10528.1	chr2	16401652	16401852	+	1	NA	NA	NA	45448	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.000000	0.407960	
mm_85215.1	chr9	96892577	96892777	-	1	NA	NA	NA	-3203	NM_001289645	235534	Mm.233031	NM_153420	ENSMUSG00000043587	Pxylp1	9430094M07Rik|Acpl2|BB177120|C130099A20Rik	2-phosphoxylose phosphatase 1	protein-coding	0.010000	0.542289	
mm_42960.1	chr5	123076319	123076519	+	1	NA	NA	NA	144	NM_001039723	330189	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0.120000	0.716418	
mm_11440.1	chr2	32034314	32034514	+	1	NA	NA	NA	-16532	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	0.015000	0.567164	
mm_391.1	chr1	34097180	34097380	+	1	NA	NA	NA	-20079	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.000000	0.472637	
mm_61346.1	chr7	68286094	68286294	+	1	NA	NA	NA	-9600	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.020000	0.477612	
mm_163624.1	chr13	56128219	56128419	+	1	NA	NA	NA	7231	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.035000	0.597015	
mm_119545.1	chr14	48227028	48227228	+	1	NA	NA	NA	28412	NR_003630	624367	Mm.445185	NM_001037921	ENSMUSG00000063885	Gm6498	EG624367	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.010000	0.507463	
mm_87669.1	chr10	58812284	58812484	+	1	NA	NA	NA	-975	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding	0.065000	0.611940	
mm_81176.1	chr9	107313428	107313628	+	1	NA	NA	NA	16869	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.020000	0.462687	
mm_111872.1	chr12	108003445	108003645	-	1	NA	NA	NA	-131	NM_021399	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.035000	0.452736	
mm_32237.1	chr4	102255050	102255250	+	1	NA	NA	NA	211	NM_019840	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.020000	0.477612	
mm_13376.1	chr2	103761320	103761520	+	1	NA	NA	NA	-170	NM_153126	98956	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.055000	0.487562	
mm_100089.1	chr11	115536394	115536594	+	1	NA	NA	NA	-264	NM_133354	170930	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	0.105000	0.676617	
mm_59855.1	chr7	29944477	29944677	+	1	NA	NA	NA	7316	NM_178384	72723	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77	zinc finger protein 74	protein-coding	0.005000	0.462687	
mm_14186.1	chr2	127080157	127080357	+	1	NA	NA	NA	9600	NM_026678	109778	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0.010000	0.422886	
mm_14021.1	chr2	122150877	122151077	+	1	NA	NA	NA	3290	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.030000	0.452736	
mm_61231.1	chr7	64502098	64502298	+	1	NA	NA	NA	60	NM_001291167	11784	Mm.4657	NM_007461	ENSMUSG00000030519	Apba2	X11-like|X11L|XllL|mXllL	amyloid beta (A4) precursor protein-binding, family A, member 2	protein-coding	0.155000	0.766169	
mm_97746.1	chr11	80472568	80472768	+	1	NA	NA	NA	-4378	NM_009871	12569	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0.005000	0.358209	-55(CTTTTTAAATAG,+,0.00)
mm_108259.1	chr12	78356681	78356881	+	1	NA	NA	NA	130126	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.015000	0.412935	-75(CTGTTTATAAGC,-,0.00),-51(TGCTTTTAAAAC,-,0.00),-50(GCTTTTAAAACT,+,0.00),-49(CTTTTAAAACTG,+,0.00)
mm_24604.1	chr3	93445450	93445650	+	1	NA	NA	NA	3220	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.065000	0.567164	
mm_169910.1	chr16	54868122	54868322	-	1	NA	NA	NA	415015	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0.050000	0.646766	
mm_84566.1	chr9	68771360	68771560	-	1	NA	NA	NA	6114	NR_033299	320440	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.005000	0.527363	
mm_41926.1	chr5	105684254	105684454	+	1	NA	NA	NA	-15615	NM_001122768	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.000000	0.477612	
mm_164873.1	chr18	57615470	57615670	+	1	NA	NA	NA	23015	NR_045360	70157	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0.005000	0.308458	
mm_94874.1	chr11	24098466	24098666	+	1	NA	NA	NA	17871	NM_001159290	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.000000	0.308458	
mm_121953.1	chr14	24369705	24369905	-	1	NA	NA	NA	76441	NM_001033214	105418	Mm.2077	NM_001033214	ENSMUSG00000038925	E330034G19Rik	AA415275|Zpac	RIKEN cDNA E330034G19 gene	protein-coding	0.020000	0.487562	-77(CCCTTTAAATGA,-,0.00),-15(GGGTCTAAAAGC,-,0.00)
mm_42899.1	chr5	122422408	122422608	+	1	NA	NA	NA	64	NM_019805	56317	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0.115000	0.686567	
mm_147565.1	chr18	54990244	54990444	-	1	NA	NA	NA	-164	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.030000	0.412935	
mm_153528.1	chr19	41847961	41848161	-	1	NA	NA	NA	71	NM_177603	212398	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	0.135000	0.736318	
mm_122041.1	chr14	30009188	30009388	-	1	NA	NA	NA	288	NM_001136240	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.030000	0.562189	
mm_153045.1	chr19	32068675	32068875	-	1	NA	NA	NA	34365	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.005000	0.502488	
mm_169516.1	chr14	8666191	8666391	-	1	NA	NA	NA	-1	NM_028934	74430	Mm.271901	NM_028934	ENSMUSG00000021747	4930452B06Rik	4933406L09Rik|AI854000	RIKEN cDNA 4930452B06 gene	protein-coding	0.105000	0.696517	
mm_145113.1	chr18	44270019	44270219	+	1	NA	NA	NA	-8	NM_010935	18169	Mm.57234	NM_010935	ENSMUSG00000038071	Npy6r	-	neuropeptide Y receptor Y6	protein-coding	0.010000	0.487562	
mm_155244.1	chrX	57223390	57223590	+	1	NA	NA	NA	11347	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.020000	0.487562	
mm_120183.1	chr14	61309766	61309966	+	1	NA	NA	NA	113	NM_177337	219144	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	0.015000	0.512438	
mm_17661.1	chr2	32083146	32083346	-	1	NA	NA	NA	459	NM_175511	241303	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.080000	0.621891	
mm_126442.1	chr15	80671591	80671791	+	1	NA	NA	NA	-156	NM_145986	213956	Mm.132439	NM_145986	ENSMUSG00000022408	Fam83f	AW544981	family with sequence similarity 83, member F	protein-coding	0.125000	0.736318	
mm_169598.1	chr15	34008513	34008713	-	1	NA	NA	NA	-74106	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.010000	0.462687	-30(CCTTTTAAAATT,+,0.00)
mm_131325.1	chr16	12811297	12811497	+	1	NA	NA	NA	7	NR_040507	75493	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.010000	0.417910	
mm_44570.1	chr5	24752066	24752266	-	1	NA	NA	NA	5677	NM_153076	214301	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0.015000	0.552239	
mm_141666.1	chr17	33824352	33824552	-	1	NA	NA	NA	46	NM_016844	54127	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	0.065000	0.542289	-76(GACTATAAAAGG,-,0.00)
mm_110325.1	chr12	34906788	34906988	-	1	NA	NA	NA	10207	NM_001271386	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.165000	0.786070	
mm_145830.1	chr18	65438725	65438925	+	1	NA	NA	NA	7828	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.005000	0.417910	44(GCTTATATACAG,+,0.00)
mm_10273.1	chr2	9882102	9882302	+	1	NA	NA	NA	956	NR_024257	381347	Mm.441450	NR_024257		4930412O13Rik	ENSMUSG00000075535|Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.045000	0.557214	
mm_108908.1	chr12	100206027	100206227	+	1	NA	NA	NA	5983	NM_001313934	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.035000	0.452736	-82(CCTCTTAAAACC,+,0.00)
mm_74223.1	chr8	124047511	124047711	+	1	NA	NA	NA	24138	NM_001029876	382038	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	0.010000	0.427861	
mm_126440.1	chr15	80671541	80671741	+	1	NA	NA	NA	-206	NM_145986	213956	Mm.132439	NM_145986	ENSMUSG00000022408	Fam83f	AW544981	family with sequence similarity 83, member F	protein-coding	0.090000	0.696517	
mm_115741.1	chr13	17805237	17805437	-	1	NA	NA	NA	-240	NM_027118	69562	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.165000	0.731343	
mm_26974.1	chr3	24955045	24955245	-	1	NA	NA	NA	-171139	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.000000	0.323383	
mm_79974.1	chr9	66713613	66713813	+	1	NA	NA	NA	27	NM_001306148	76459	Mm.277921	NM_178396	ENSMUSG00000032373	Car12	2310047E01Rik|AI314958|CA-XII|Ca12	carbonic anhydrase 12	protein-coding	0.055000	0.621891	
mm_154841.1	chrX	20059487	20059687	+	1	NA	NA	NA	17	NM_021715	60322	Mm.44827	NM_021715	ENSMUSG00000037347	Chst7	2600013M07Rik|C6ST-2|GST5|Gn6st-4|glcNAc6ST-4	carbohydrate (N-acetylglucosamino) sulfotransferase 7	protein-coding	0.045000	0.611940	
mm_72345.1	chr8	79639349	79639549	+	1	NA	NA	NA	-227	NM_001256033	73945	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.130000	0.686567	
mm_173314.1	chrY	90735163	90735363	+	1	NA	NA	NA	19787	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.000000	0.482587	
mm_54078.1	chr6	14757506	14757706	-	1	NA	NA	NA	-2332	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	0.015000	0.343284	
mm_72457.1	chr8	83235976	83236176	+	1	NA	NA	NA	-54272	NM_009463	22227	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	0.000000	0.402985	
mm_3874.1	chr1	160997542	160997742	+	1	NA	NA	NA	19036	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.015000	0.582090	
mm_50723.1	chr6	52244908	52245108	+	1	NA	NA	NA	-235	NR_015348	15397	Mm.469918	NR_015348	ENSMUSG00000086427	Hoxa11os	Hoxa11as|Hoxa11s	homeobox A11, opposite strand	ncRNA	0.090000	0.582090	-99(CCTTATATGCTT,+,0.00),-11(GCCTTTATACGC,+,0.00)
mm_139988.1	chr17	72871584	72871784	+	1	NA	NA	NA	34980	NM_027166	383295	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee-like 5 (Drosophila)	protein-coding	0.010000	0.447761	
mm_132930.1	chr16	49854253	49854453	+	1	NA	NA	NA	-1301	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.015000	0.467662	
mm_63881.1	chr7	137370578	137370778	+	1	NA	NA	NA	40078	NM_029886	77252	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.020000	0.532338	-26(CCTTTTAAGATG,+,0.00)
mm_171913.1	chr5	54453305	54453505	+	1	NA	NA	NA	103413	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA	0.015000	0.507463	
mm_33702.1	chr4	133629445	133629645	+	1	NA	NA	NA	3884	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.015000	0.437811	
mm_6241.1	chr1	67038625	67038825	-	1	NA	NA	NA	109	NM_001190984	14768	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	0.110000	0.721393	
mm_96298.1	chr11	63134361	63134561	+	1	NA	NA	NA	1658	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.030000	0.547264	
mm_32055.1	chr4	97777238	97777438	+	1	NA	NA	NA	-288	NM_001122953	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.120000	0.691542	
mm_20267.1	chr2	126675425	126675625	-	1	NA	NA	NA	67	NM_001271469	14391	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.140000	0.716418	
mm_151844.1	chr19	5731396	5731596	-	1	NA	NA	NA	236	NM_020491	56390	Mm.455818	NM_020491	ENSMUSG00000079478	Sssca1	1500016H19Rik|C184L	Sjogren's syndrome/scleroderma autoantigen 1 homolog (human)	protein-coding	0.120000	0.671642	
mm_125865.1	chr15	75474391	75474591	+	1	NA	NA	NA	25039	NM_001347049	102637705		NM_001347049	ENSMUSG00000093626	Ly6l	Gm20654	lymphocyte antigen 6 complex, locus L	protein-coding	0.015000	0.597015	
mm_145861.1	chr18	65456354	65456554	+	1	NA	NA	NA	25457	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.005000	0.338308	
mm_152924.1	chr19	28011104	28011304	-	1	NA	NA	NA	-38	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.095000	0.666667	
mm_169616.1	chr1	5380596	5380796	-	1	NA	NA	NA	-207797	NM_011011	18387	Mm.7977	NM_011011	ENSMUSG00000025905	Oprk1	K-OR-1|KOR|KOR-1|MSL-1|Oprk2|R21	opioid receptor, kappa 1	protein-coding	0.015000	0.497512	
mm_49616.1	chr6	30747724	30747924	+	1	NA	NA	NA	6525	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.010000	0.462687	
mm_147159.1	chr18	36700458	36700658	-	1	NA	NA	NA	-4633	NM_172831	240216	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0.015000	0.502488	
mm_61940.1	chr7	90182649	90182849	+	1	NA	NA	NA	52517	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.293532	
mm_154744.1	chrX	10416579	10416779	+	1	NA	NA	NA	-68437	NM_019634	21912	Mm.18590	NM_019634	ENSMUSG00000058254	Tspan7	1200014P11Rik|A15|AI323365|Cd231|Mxs1|PE31|R74651|TALLA|Tm4sf2	tetraspanin 7	protein-coding	0.040000	0.517413	
mm_102644.1	chr11	62760447	62760647	-	1	NA	NA	NA	28870	NM_138949	192651	Mm.168530	NM_138949	ENSMUSG00000047342	Zfp286	BC027023	zinc finger protein 286	protein-coding	0.010000	0.363184	
mm_42123.1	chr5	110895187	110895387	+	1	NA	NA	NA	15484	NM_001267622	209683	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	0.015000	0.507463	
mm_93157.1	chr10	93160427	93160627	-	1	NA	NA	NA	-349	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.065000	0.631841	
mm_85828.1	chr9	110422461	110422661	-	1	NA	NA	NA	2753	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.000000	0.522388	
mm_143279.1	chr17	65748386	65748586	-	1	NA	NA	NA	24266	NM_133685	106572	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.005000	0.343284	
mm_163025.1	chr11	49177000	49177200	+	1	NA	NA	NA	9989	NM_172793	237754	Mm.130787	NM_172793	ENSMUSG00000040283	Btnl9	B430208I01|Btn3|D330012D11Rik	butyrophilin-like 9	protein-coding	0.005000	0.462687	
mm_124551.1	chr14	122912838	122913038	-	1	NA	NA	NA	227	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.095000	0.661692	
mm_106115.1	chr11	116335308	116335508	-	1	NA	NA	NA	-54	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.110000	0.691542	
mm_4133.1	chr1	170642746	170642946	+	1	NA	NA	NA	-1686	NM_177068	320078	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.005000	0.293532	89(CTCTTTTTAAGA,-,0.00)
mm_130789.1	chr15	101676184	101676384	-	1	NA	NA	NA	4005	NM_010669	16688	Mm.441891	NM_010669	ENSMUSG00000023041	Krt6b	BB144589|Krt2-6b|mK6[b]	keratin 6B	protein-coding	0.005000	0.462687	
mm_41512.1	chr5	92376862	92377062	+	1	NA	NA	NA	-11172	NM_181728	109979	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0.040000	0.517413	-45(AGCTTTAAAAGT,-,0.00),-44(GCTTTAAAAGTT,+,0.00)
mm_100622.1	chr11	121673356	121673556	+	1	NA	NA	NA	-305	NM_178664	210004	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0.060000	0.597015	
mm_48827.1	chr5	149052966	149053166	-	1	NA	NA	NA	-9	NM_010439	15289	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.070000	0.616915	
mm_7002.1	chr1	86442386	86442586	-	1	NA	NA	NA	16157	NM_027966	71863	Mm.179627	NM_027966	ENSMUSG00000036574	1700019O17Rik	-	RIKEN cDNA 1700019O17 gene	protein-coding	0.115000	0.676617	
mm_164637.1	chr17	34460214	34460414	+	1	NA	NA	NA	15623	NM_030746	632126	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	0.025000	0.472637	
mm_69390.1	chr7	131362645	131362845	-	1	NA	NA	NA	-47	NM_026655	68277	Mm.121122	NM_026655	ENSMUSG00000040177	2310057M21Rik	3110040E10Rik|AI429544	RIKEN cDNA 2310057M21 gene	protein-coding	0.080000	0.631841	
mm_67467.1	chr7	80410112	80410312	-	1	NA	NA	NA	-4776	NM_001081454	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.035000	0.522388	
mm_20827.1	chr2	146511863	146512063	-	1	NA	NA	NA	41	NM_001033348	241694	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	0.125000	0.731343	
mm_28710.1	chr3	95651912	95652112	-	1	NA	NA	NA	-6709	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.005000	0.398010	
mm_48482.1	chr5	141268381	141268581	-	1	NA	NA	NA	26947	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	0.050000	0.517413	-12(GACTTTAAAAGA,-,0.00),-11(ACTTTAAAAGAG,+,0.00)
mm_29989.1	chr3	135438520	135438720	-	1	NA	NA	NA	45	NR_030689	319587	Mm.358971	NR_030689	ENSMUSG00000097032	4930539J05Rik	8030475D13Rik	RIKEN cDNA 4930539J05 gene	ncRNA	0.150000	0.736318	
mm_95023.1	chr11	32001748	32001948	+	1	NA	NA	NA	571	NM_001290681	18197	Mm.3304	NM_008741	ENSMUSG00000020297	Nsg2	-	neuron specific gene family member 2	protein-coding	0.030000	0.567164	
mm_62198.1	chr7	97788436	97788636	+	1	NA	NA	NA	-50289	NM_175105	66333	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.115000	0.751244	
mm_66030.1	chr7	30626001	30626201	-	1	NA	NA	NA	50	NM_025628	110323	Mm.400	NM_025628	ENSMUSG00000036751	Cox6b1	2010000G05Rik|Cox6b	cytochrome c oxidase, subunit VIb polypeptide 1	protein-coding	0.070000	0.582090	
mm_109232.1	chr12	108838475	108838675	+	1	NA	NA	NA	1602	NR_029773	723946		NR_029773	ENSMUSG00000065429	Mir345	Mirn345|mir-345|mmu-mir-345	microRNA 345	ncRNA	0.035000	0.547264	
mm_98542.1	chr11	95010081	95010281	+	1	NA	NA	NA	302	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.085000	0.631841	
mm_6284.1	chr1	69685852	69686052	-	1	NA	NA	NA	8	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.020000	0.572139	
mm_34293.1	chr4	141614214	141614414	+	1	NA	NA	NA	-56	NR_033566	100165	Mm.439819	NR_033566	ENSMUSG00000073731	AI507597	-	expressed sequence AI507597	ncRNA	0.020000	0.557214	
mm_145658.1	chr18	61130571	61130771	+	1	NA	NA	NA	13203	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.015000	0.537313	
mm_102793.1	chr11	68824973	68825173	-	1	NA	NA	NA	28058	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.010000	0.398010	
mm_89836.1	chr10	106638303	106638503	+	1	NA	NA	NA	-35923	NR_131026	75833	Mm.159596	NR_131026		4930532I03Rik	-	RIKEN cDNA 4930532I03 gene	ncRNA	0.000000	0.283582	-31(CTCTTTTAAAGA,-,0.00),-30(TCTTTTAAAGAA,+,0.00),7(CCCTTTAGAACC,+,0.00),59(CAGTCTAAAAAG,-,0.00)
mm_100815.1	chr11	5110020	5110220	-	1	NA	NA	NA	9955	NM_001290493	279766	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0.000000	0.467662	
mm_16120.1	chr2	169970713	169970913	+	1	NA	NA	NA	-7626	NR_131974	446211	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0.005000	0.482587	
mm_15365.1	chr2	156420959	156421159	+	1	NA	NA	NA	150	NM_001291123	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.110000	0.736318	
mm_78580.1	chr9	37208086	37208286	+	1	NA	NA	NA	-37	NM_025464	66279	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	0.035000	0.492537	
mm_47904.1	chr5	134932580	134932780	-	1	NA	NA	NA	307	NM_001347490	79565	Mm.34235	NM_024479	ENSMUSG00000040557	Wbscr27	AW492986|BC002286	Williams Beuren syndrome chromosome region 27 (human)	protein-coding	0.045000	0.626866	
mm_38936.1	chr4	150196013	150196213	-	1	NA	NA	NA	5022	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.030000	0.442786	
mm_83909.1	chr9	56266320	56266520	-	1	NA	NA	NA	-105350	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.010000	0.412935	41(GTCCTTAAAAGC,-,0.00),42(TCCTTAAAAGCC,+,0.00)
mm_148771.1	chr19	6095721	6095921	+	1	NA	NA	NA	-9977	NM_001009546	381204	Mm.359041	NM_001009546	ENSMUSG00000054999	Naaladl1	Gm964|Naaladasel	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding	0.005000	0.487562	
mm_15092.1	chr2	153278623	153278823	+	1	NA	NA	NA	-12693	NM_008444	16569	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0.015000	0.601990	
mm_25482.1	chr3	109122930	109123130	+	1	NA	NA	NA	-119	NM_172685	229731	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	0.055000	0.711443	
mm_89069.1	chr10	82958112	82958312	+	1	NA	NA	NA	-27285	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.010000	0.487562	
mm_162634.1	chr1	190116686	190116886	+	1	NA	NA	NA	53894	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding	0.015000	0.407960	
mm_34269.1	chr4	141423903	141424103	+	1	NA	NA	NA	3224	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.040000	0.597015	
mm_145460.1	chr18	60242797	60242997	+	1	NA	NA	NA	30370	NM_001034859	225594	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	0.010000	0.388060	
mm_72102.1	chr8	71597574	71597774	+	1	NA	NA	NA	28	NM_001166213	100037278	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	0.000000	0.606965	
mm_90128.1	chr10	117710073	117710273	+	1	NA	NA	NA	585	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.100000	0.711443	
mm_172049.1	chr6	128653318	128653518	-	1	NA	NA	NA	-8967	NM_053165	94071	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	0.025000	0.502488	
mm_122920.1	chr14	54960383	54960583	-	1	NA	NA	NA	6124	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.015000	0.527363	
mm_127361.1	chr15	100684491	100684691	+	1	NA	NA	NA	3329	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.025000	0.606965	
mm_97048.1	chr11	72435472	72435672	+	1	NA	NA	NA	46	NM_027819	71522	Mm.23336	NM_027819	ENSMUSG00000040471	Ggt6	9030405D14Rik|AI427679|AW490214	gamma-glutamyltransferase 6	protein-coding	0.015000	0.601990	
mm_100520.1	chr11	120534640	120534840	+	1	NA	NA	NA	4013	NM_008101	14527	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.010000	0.597015	
mm_116966.1	chr13	56176275	56176475	-	1	NA	NA	NA	2510	NM_145976	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.020000	0.577114	
mm_101624.1	chr11	35980349	35980549	-	1	NA	NA	NA	-360	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.160000	0.805970	
mm_25030.1	chr3	98149704	98149904	+	1	NA	NA	NA	-10830	NM_027665	71078	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.015000	0.343284	
mm_139294.1	chr17	48316062	48316262	+	1	NA	NA	NA	0	NM_177083	320148	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.010000	0.532338	
mm_113112.1	chr13	24416879	24417079	+	1	NA	NA	NA	1857	NM_001284520	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.025000	0.497512	83(GGATTTTAAAAG,-,0.00),84(GATTTTAAAAGG,-,0.00)
mm_100093.1	chr11	115603885	115604085	+	1	NA	NA	NA	-69	NM_173048	260302	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	0.135000	0.736318	
mm_126277.1	chr15	79209123	79209323	+	1	NA	NA	NA	-19950	NM_008837	18693	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	0.055000	0.616915	
mm_150537.1	chr19	39307516	39307716	+	1	NA	NA	NA	20531	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.005000	0.353234	
mm_5667.1	chr1	42695098	42695298	-	1	NA	NA	NA	-373	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.065000	0.542289	
mm_95295.1	chr11	46055993	46056193	+	1	NA	NA	NA	109	NM_001291891	11492	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.100000	0.671642	-83(GCTTTTAGGCCG,+,0.00)
mm_116243.1	chr13	33928296	33928496	-	1	NA	NA	NA	-7636	NR_040707	68808	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0.005000	0.338308	
mm_128939.1	chr15	74716587	74716787	-	1	NA	NA	NA	1848	NM_028216	72373	Mm.46395	NM_028216	ENSMUSG00000022598	Psca	2210408B04Rik	prostate stem cell antigen	protein-coding	0.015000	0.616915	
mm_170801.1	chr2	175606079	175606279	-	1	NA	NA	NA	-34212	NM_001177543	100039060	Mm.289463	NM_001177543	ENSMUSG00000078886	0610010B08Rik	Gm2026	RIKEN cDNA 0610010B08 gene	protein-coding	0.015000	0.492537	
mm_73556.1	chr8	108959475	108959675	+	1	NA	NA	NA	22715	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.005000	0.278607	
mm_58571.1	chr7	4793065	4793265	+	1	NA	NA	NA	200	NM_009081	19943	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	0.060000	0.611940	
mm_5763.1	chr1	46925664	46925864	-	1	NA	NA	NA	-72255	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.005000	0.422886	
mm_147475.1	chr18	46958941	46959141	-	1	NA	NA	NA	165	NM_178377	69456	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2	COMM domain containing 10	protein-coding	0.095000	0.721393	
mm_155599.1	chrX	82814652	82814852	+	1	NA	NA	NA	-134118	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.040000	0.467662	
mm_43820.1	chr5	142960385	142960585	+	1	NA	NA	NA	130	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.075000	0.606965	
mm_159150.1	chr2	87950378	87950578	-	1	NA	NA	NA	-213	NM_146817	258814	Mm.377703	NM_146817	ENSMUSG00000075144	Olfr1156	MOR174-3	olfactory receptor 1156	protein-coding	0.005000	0.348259	-78(GCTTTAATAAAG,+,0.00)
mm_21719.1	chr2	164638654	164638854	-	1	NA	NA	NA	48	NM_001012723	277345	Mm.247244	NM_001012723	ENSMUSG00000070530	Wfdc16	BC043944|WAP16	WAP four-disulfide core domain 16	protein-coding	0.010000	0.502488	
mm_61747.1	chr7	82649286	82649486	+	1	NA	NA	NA	772	NM_175317	101592	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	0.010000	0.507463	
mm_13269.1	chr2	98666894	98667094	+	1	NA	NA	NA	1199337	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.030000	0.363184	
mm_19269.1	chr2	85035399	85035599	-	1	NA	NA	NA	335	NM_145526	228139	Mm.440375	NM_145526	ENSMUSG00000027071	P2rx3	4930513E20Rik|P2X3	purinergic receptor P2X, ligand-gated ion channel, 3	protein-coding	0.015000	0.557214	
mm_123086.1	chr14	55754368	55754568	-	1	NA	NA	NA	3956	NM_009894	12684	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	0.025000	0.587065	85(GGGTAGTAAAGG,-,0.00)
mm_15222.1	chr2	154449395	154449595	+	1	NA	NA	NA	13011	NM_009823	12396	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	0.005000	0.462687	
mm_96916.1	chr11	70463809	70464009	+	1	NA	NA	NA	-3925	NM_023158	66102	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.025000	0.611940	
mm_135049.1	chr16	33251250	33251450	-	1	NA	NA	NA	-106	NM_080557	69150	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	0.080000	0.681592	
mm_3172.1	chr1	135711284	135711484	+	1	NA	NA	NA	-17813	NM_007791	13007	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.015000	0.522388	
mm_47495.1	chr5	124010697	124010897	-	1	NA	NA	NA	13945	NR_105999	102465625		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.030000	0.542289	
mm_87565.1	chr10	56377231	56377431	+	1	NA	NA	NA	31	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.020000	0.472637	-33(ACTTTTAAAAGC,-,0.00),-32(CTTTTAAAAGCT,+,0.00)
mm_36479.1	chr4	82859707	82859907	-	1	NA	NA	NA	-146	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0.065000	0.666667	
mm_84614.1	chr9	70455571	70455771	-	1	NA	NA	NA	-34117	NM_007630	12442	Mm.22592	NM_007630	ENSMUSG00000032218	Ccnb2	CycB2	cyclin B2	protein-coding	0.000000	0.373134	-52(CTCCATAAATGC,-,0.00)
mm_161440.1	chr15	66286027	66286227	-	1	NA	NA	NA	97	NM_152923	110862	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	0.130000	0.761194	
mm_54023.1	chr6	8778122	8778322	-	1	NA	NA	NA	262	NM_010492	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.150000	0.776119	
mm_109339.1	chr12	109590425	109590625	+	1	NA	NA	NA	78	NR_029951	723866		NR_029951	ENSMUSG00000070080	Mir431	Mirn431|mir-431|mmu-mir-431	microRNA 431	ncRNA	0.075000	0.577114	
mm_156216.1	chrX	134686998	134687198	+	1	NA	NA	NA	579	NM_001202500	100503043	Mm.31961	NM_001202500	ENSMUSG00000049804	Armcx4	AI448196|Gm195	armadillo repeat containing, X-linked 4	protein-coding	0.035000	0.522388	
mm_100334.1	chr11	118319011	118319211	+	1	NA	NA	NA	23423	NM_021440	58251	Mm.439815	NM_021440	ENSMUSG00000076433	BC100451	Cep295nl|Ddc8|FS39|Kiaa1731nl	cDNA sequence BC100451	protein-coding	0.005000	0.507463	
mm_82839.1	chr9	31164571	31164771	-	1	NA	NA	NA	-32872	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.020000	0.497512	
mm_56917.1	chr6	119388662	119388862	-	1	NA	NA	NA	28721	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.190000	0.766169	
mm_61592.1	chr7	80025721	80025921	+	1	NA	NA	NA	-407	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.035000	0.537313	
mm_32864.1	chr4	118428036	118428236	+	1	NA	NA	NA	43	NM_019422	54325	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	0.055000	0.686567	
mm_123236.1	chr14	60121661	60121861	-	1	NA	NA	NA	-34927	NM_015803	50769	Mm.319599	NM_015803	ENSMUSG00000021983	Atp8a2	AI415030|Atpc1b|agil|wl	ATPase, aminophospholipid transporter-like, class I, type 8A, member 2	protein-coding	0.035000	0.552239	
mm_118975.1	chr14	28029220	28029420	+	1	NA	NA	NA	406913	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	0.010000	0.373134	
mm_57912.1	chr6	133380955	133381155	-	1	NA	NA	NA	88839	NM_027784	232426	Mm.158689	NM_027784	ENSMUSG00000055594	5530400C23Rik	GRP	RIKEN cDNA 5530400C23 gene	protein-coding	0.005000	0.497512	-34(CCTTTTATAAAG,+,0.00)
mm_142097.1	chr17	35834847	35835047	-	1	NA	NA	NA	3354	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.015000	0.517413	
mm_86757.1	chr10	19609914	19610114	+	1	NA	NA	NA	-12014	NM_178258	237310	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	0.020000	0.437811	
mm_43988.1	chr5	146472567	146472767	+	1	NA	NA	NA	-9276	NM_001243104	623198	Mm.489582	NM_001243104	ENSMUSG00000096344	Gm6408	-	predicted gene 6408	protein-coding	0.010000	0.353234	
mm_113826.1	chr13	47043459	47043659	+	1	NA	NA	NA	60	NM_172262	218214	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	0.105000	0.736318	
mm_155347.1	chrX	68678584	68678784	+	1	NA	NA	NA	143	NM_001290424	14265	Mm.3451	NM_008031	ENSMUSG00000000838	Fmr1	FMRP|Fmr-1	fragile X mental retardation syndrome 1	protein-coding	0.160000	0.761194	
mm_29858.1	chr3	130052132	130052332	-	1	NA	NA	NA	8675	NM_207209	99683	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.030000	0.487562	
mm_7506.1	chr1	122357135	122357335	-	1	NA	NA	NA	-789255	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	0.070000	0.597015	
mm_69578.1	chr7	135701834	135702034	-	1	NA	NA	NA	14445	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.407960	
mm_161174.1	chr13	38528727	38528927	-	1	NA	NA	NA	-3	NM_001289598	105245	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	0.010000	0.497512	
mm_86763.1	chr10	19933520	19933720	+	1	NA	NA	NA	-906	NM_008580	26408	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.100000	0.616915	
mm_65113.1	chr7	19319919	19320119	-	1	NA	NA	NA	-9974	NM_001347586	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.095000	0.661692	
mm_133059.1	chr16	58458244	58458444	+	1	NA	NA	NA	49809	NM_028523	73379	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.020000	0.398010	49(AGCCATAAAAGC,-,0.00)
mm_102925.1	chr11	69600555	69600755	-	1	NA	NA	NA	5305	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.005000	0.507463	
mm_100883.1	chr11	6003110	6003310	-	1	NA	NA	NA	47452	NM_019661	56418	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0.005000	0.601990	
mm_56704.1	chr6	114969896	114970096	-	1	NA	NA	NA	-48244	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.080000	0.631841	
mm_16984.1	chr2	18047784	18047984	-	1	NA	NA	NA	565	NM_028317	72668	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113	SKI/DACH domain containing 1	protein-coding	0.135000	0.711443	
mm_103654.1	chr11	78973039	78973239	-	1	NA	NA	NA	11785	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.025000	0.507463	
mm_81170.1	chr9	107299910	107300110	+	1	NA	NA	NA	3351	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.020000	0.621891	
mm_106296.1	chr11	118218940	118219140	-	1	NA	NA	NA	-6298	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.020000	0.447761	
mm_155579.1	chrX	78125368	78125568	+	1	NA	NA	NA	1	NM_001085534	546335	Mm.476683	NM_001085534	ENSMUSG00000079521	Gm5938	EG546335|OBP6	predicted gene 5938	protein-coding	0.000000	0.383085	
mm_151646.1	chr19	4058949	4059149	-	1	NA	NA	NA	245	NM_144869	225884	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.020000	0.572139	
mm_157292.1	chrX	20862079	20862279	-	1	NA	NA	NA	1003	NR_049190	100885829		NR_049190	ENSMUSG00000093408	Mir5617	Gm25192|mir-5617|mmu-mir-5617	microRNA 5617	ncRNA	0.000000	0.507463	
mm_154417.1	chrM	15934	16134	+	1	NA	NA	NA	NA	NA									0.020000	0.432836	
mm_29688.1	chr3	123040952	123041152	-	1	NA	NA	NA	-6065	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.025000	0.497512	
mm_80642.1	chr9	89335277	89335477	+	1	NA	NA	NA	124187	NM_026829	107885	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.000000	0.417910	
mm_77456.1	chr8	121907533	121907733	-	1	NA	NA	NA	53	NM_011404	20539	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	0.185000	0.761194	
mm_149394.1	chr19	11387537	11387737	+	1	NA	NA	NA	12149	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.005000	0.308458	
mm_135909.1	chr16	67545744	67545944	-	1	NA	NA	NA	75064	NM_001347247	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.000000	0.432836	
mm_167380.1	chr8	94340426	94340626	+	1	NA	NA	NA	11318	NM_001205311	20497	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.020000	0.572139	
mm_137658.1	chr17	28691231	28691431	+	1	NA	NA	NA	-11	NM_001168508	26416	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.105000	0.676617	
mm_165896.1	chr4	45972059	45972259	+	1	NA	NA	NA	-138	NM_146142	100121	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.115000	0.597015	
mm_116051.1	chr13	27435320	27435520	-	1	NA	NA	NA	3268	NM_001271379	19112	Mm.142728	NM_011167	ENSMUSG00000021345	Prl8a6	Ghd13|PLP-C1|PLP-Ca|PLP-calpha|Prlpc|Prlpc1	prolactin family 8, subfamily a, member 6	protein-coding	0.005000	0.378109	
mm_42939.1	chr5	122989257	122989457	+	1	NA	NA	NA	3	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.085000	0.681592	
mm_151597.1	chr19	3441195	3441395	-	1	NA	NA	NA	-26751	NM_010253	14419	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	0.035000	0.527363	
mm_128591.1	chr15	58119232	58119432	-	1	NA	NA	NA	15750	NM_027435	70472	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0.005000	0.427861	
mm_153412.1	chr19	40588300	40588500	-	1	NA	NA	NA	63	NM_019698	56454	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	0.120000	0.676617	
mm_30435.1	chr3	153474549	153474749	-	1	NA	NA	NA	-176000	NR_126464	75489	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0.000000	0.482587	
mm_86590.1	chr10	13124858	13125058	+	1	NA	NA	NA	34113	NR_131912	338438		NR_131912		Hymai	-	hydatidiform mole associated and imprinted transcript	ncRNA	0.015000	0.522388	-4(GGGCTTAAATGG,-,0.00),-2(GCTTAAATGGCA,+,0.00)
mm_14599.1	chr2	136059690	136059890	+	1	NA	NA	NA	1863	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.010000	0.502488	
mm_139283.1	chr17	48299394	48299594	+	1	NA	NA	NA	-544	NM_001033405	328833	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0.010000	0.567164	
mm_93460.1	chr10	110456129	110456329	-	1	NA	NA	NA	-144421	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA	0.030000	0.522388	
mm_60079.1	chr7	34022714	34022914	+	1	NA	NA	NA	1247	NM_009596	11354	Mm.8025	NM_009596	ENSMUSG00000066583	Scgb1b27	Abp|Abpa|Abpa27|Sal-1|Tcp	secretoglobin, family 1B, member 27	protein-coding	0.015000	0.472637	
mm_149711.1	chr19	21653189	21653389	+	1	NA	NA	NA	-20	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.160000	0.805970	
mm_107740.1	chr12	58212178	58212378	+	1	NA	NA	NA	474	NM_009216	20605	Mm.278336	NM_009216	ENSMUSG00000035431	Sstr1	SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1	somatostatin receptor 1	protein-coding	0.050000	0.597015	
mm_21256.1	chr2	156312423	156312623	-	1	NA	NA	NA	50	NM_001316755	70873	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	0.090000	0.641791	
mm_109920.1	chr12	8498574	8498774	-	1	NA	NA	NA	1311	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.030000	0.621891	
mm_64273.1	chr7	141808414	141808614	+	1	NA	NA	NA	19503	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.010000	0.577114	
mm_155313.1	chrX	61709509	61709709	+	1	NA	NA	NA	-7	NM_001018087	434784	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Sirh7	leucine zipper, down-regulated in cancer 1	protein-coding	0.065000	0.616915	
mm_74978.1	chr8	27141445	27141645	-	1	NA	NA	NA	-1365	NR_045840	71082	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.005000	0.412935	
mm_101835.1	chr11	47989298	47989498	-	1	NA	NA	NA	85185	NR_105801	102466638		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	0.025000	0.547264	
mm_111018.1	chr12	79007253	79007453	-	1	NA	NA	NA	-76	NM_178745	268567	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.110000	0.711443	
mm_10870.1	chr2	25218646	25218846	+	1	NA	NA	NA	1	NM_026624	68222	Mm.227260	NM_026624	ENSMUSG00000026969	Fam166a	4931415M17	family with sequence similarity 166, member A	protein-coding	0.000000	0.517413	
mm_156681.1	chrX	159364201	159364401	+	1	NA	NA	NA	-7894	NM_025437	66235	Mm.294623	NM_025437	ENSMUSG00000067194	Eif1ax	1500010B24Rik|AI426898|Eif1ay	eukaryotic translation initiation factor 1A, X-linked	protein-coding	0.005000	0.378109	82(GACCTTTAAAAG,-,0.00),83(ACCTTTAAAAGA,-,0.00),84(CCTTTAAAAGAA,+,0.00)
mm_152004.1	chr19	5918347	5918547	-	1	NA	NA	NA	-5576	NM_001291078	19708	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	0.035000	0.572139	
mm_141828.1	chr17	34627308	34627508	-	1	NA	NA	NA	27	NM_001302396	54397	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	0.080000	0.646766	
mm_113035.1	chr13	23535319	23535519	+	1	NA	NA	NA	1	NM_145073	97908	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	0.095000	0.597015	
mm_21339.1	chr2	157107413	157107613	-	1	NA	NA	NA	20458	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.020000	0.393035	
mm_103193.1	chr11	70646776	70646976	-	1	NA	NA	NA	163	NM_024211	67863	Mm.296082	NM_024211	ENSMUSG00000014606	Slc25a11	2310022P18Rik|2oxoc	solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	protein-coding	0.115000	0.701493	
mm_160428.1	chr8	88288885	88289085	+	1	NA	NA	NA	-81	NM_001037723	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.020000	0.611940	
mm_134373.1	chr16	17132246	17132446	-	1	NA	NA	NA	37	NM_022324	64136	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	0.095000	0.696517	
mm_119542.1	chr14	48120815	48121015	+	1	NA	NA	NA	46	NM_033602	93834	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	0.185000	0.796020	
mm_112889.1	chr13	20884000	20884200	+	1	NA	NA	NA	89987	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.015000	0.328358	
mm_49450.1	chr6	29348080	29348280	+	1	NA	NA	NA	74	NM_184053	12321	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	0.080000	0.641791	
mm_7087.1	chr1	88559247	88559447	-	1	NA	NA	NA	7830	NR_037971	100503197	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.010000	0.542289	
mm_112891.1	chr13	20885022	20885222	+	1	NA	NA	NA	91009	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.402985	7(GCCTCTATATGC,-,0.00)
mm_35635.1	chr4	43515212	43515412	-	1	NA	NA	NA	8242	NM_009416	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.005000	0.512438	
mm_10919.1	chr2	25403064	25403264	+	1	NA	NA	NA	114	NM_008721	18146	Mm.1131	NM_008721	ENSMUSG00000015094	Npdc1	AI314472|NPDC-1	neural proliferation, differentiation and control 1	protein-coding	0.105000	0.686567	
mm_161157.1	chr13	24831893	24832093	+	1	NA	NA	NA	334	NM_019551	56196	Mm.427162	NM_019551	ENSMUSG00000035958	Tdp2	D13Ertd656e|Ttrap	tyrosyl-DNA phosphodiesterase 2	protein-coding	0.100000	0.676617	
mm_127209.1	chr15	99228437	99228637	+	1	NA	NA	NA	3561	NM_010601	16512	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0.020000	0.542289	
mm_22293.1	chr2	180257041	180257241	-	1	NA	NA	NA	-238	NM_025587	66481	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0.055000	0.666667	
mm_71170.1	chr8	40546592	40546792	+	1	NA	NA	NA	-30845	NM_001271542	18983	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0.005000	0.422886	
mm_63682.1	chr7	130552901	130553101	+	1	NA	NA	NA	-5620	NM_001162855	67872	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0.020000	0.527363	
mm_68175.1	chr7	103827827	103828027	-	1	NA	NA	NA	1	NM_001201391	100503605	Mm.288567	NM_001201391	ENSMUSG00000052305	Hbb-bs	Beta-s|Hbbt1|Hbbt2	hemoglobin, beta adult s chain	protein-coding	0.000000	0.532338	-35(GAGCATATAAGG,-,0.00)
mm_27511.1	chr3	56045711	56045911	-	1	NA	NA	NA	137890	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.000000	0.348259	
mm_158386.1	chrX	136085295	136085495	-	1	NA	NA	NA	-140	NM_001024141	245610	Mm.336244	NM_001024141	ENSMUSG00000057000	Nxf3	Gm384	nuclear RNA export factor 3	protein-coding	0.025000	0.457711	
mm_54087.1	chr6	15845896	15846096	-	1	NA	NA	NA	125335	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.000000	0.432836	45(GACCATAAAAAG,-,0.00)
mm_25636.1	chr3	120595415	120595615	+	1	NA	NA	NA	291217	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA	0.015000	0.393035	
mm_146086.1	chr18	73551601	73551801	+	1	NA	NA	NA	-21004	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.020000	0.487562	
mm_19071.1	chr2	77816511	77816711	-	1	NA	NA	NA	205	NM_178723	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.170000	0.830846	
mm_137096.1	chr17	21535548	21535748	+	1	NA	NA	NA	109	NM_144515	22710	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	0.010000	0.512438	
mm_168827.1	chr12	22623245	22623445	-	1	NA	NA	NA	386898	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA	0.125000	0.766169	
mm_105599.1	chr11	106752116	106752316	-	1	NA	NA	NA	990	NM_001033435	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.015000	0.512438	
mm_48424.1	chr5	140418641	140418841	-	1	NA	NA	NA	-564	NM_133916	27979	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	0.065000	0.547264	
mm_157342.1	chrX	36902791	36902991	-	1	NA	NA	NA	8	NM_029891	77286	Mm.21649	NM_029891	ENSMUSG00000044149	Nkrf	9430034D17Rik|AW124770|C80287	NF-kappaB repressing factor	protein-coding	0.100000	0.736318	
mm_31216.1	chr4	43983382	43983582	+	1	NA	NA	NA	-22	NM_001002787	442829	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	0.030000	0.567164	
mm_323.1	chr1	24678589	24678789	+	1	NA	NA	NA	145	NM_026719	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.115000	0.701493	
mm_47784.1	chr5	131997340	131997540	-	1	NA	NA	NA	117171	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.025000	0.517413	-57(GCCTATATGCCC,+,0.00),-49(GCCCTTTTAAGG,-,0.00),-48(CCCTTTTAAGGG,-,0.00),-47(CCTTTTAAGGGT,+,0.00),-11(CCCTTGAAAGGG,-,0.00)
mm_172868.1	chr9	41905528	41905728	-	1	NA	NA	NA	218661	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.070000	0.552239	-32(CCCTATAAAAAG,-,0.00)
mm_3803.1	chr1	157526071	157526271	+	1	NA	NA	NA	1	NM_001159986	89867	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	0.020000	0.552239	-23(GTCTCTAAGAGG,-,0.00)
mm_143550.1	chr17	74021371	74021571	-	1	NA	NA	NA	26445	NM_053188	94224	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.015000	0.447761	
mm_79301.1	chr9	51914328	51914528	+	1	NA	NA	NA	-1	NR_040731	74072	Mm.84915	NR_040731	ENSMUSG00000111836	4933407I05Rik	-	RIKEN cDNA 4933407I05 gene	ncRNA	0.030000	0.537313	
mm_80602.1	chr9	86545163	86545363	+	1	NA	NA	NA	26579	NM_001163746	109785	Mm.390201	NM_028352	ENSMUSG00000056131	Pgm3	2810473H05Rik|Agm1|BB187688|C77933|PAGM|Pgm-3	phosphoglucomutase 3	protein-coding	0.030000	0.477612	
mm_120121.1	chr14	59625210	59625410	+	1	NA	NA	NA	29	NM_145463	219134	Mm.275409	NM_145463	ENSMUSG00000044461	Shisa2	9430059P22Rik|MAd2|Tmem46|mShisa|shisa	shisa family member 2	protein-coding	0.100000	0.701493	
mm_64120.1	chr7	141079754	141079954	+	1	NA	NA	NA	85	NM_019762	56460	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0.040000	0.636816	
mm_26628.1	chr3	152884256	152884456	+	1	NA	NA	NA	97851	NM_012028	26938	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.035000	0.487562	
mm_81861.1	chr9	118835440	118835640	+	1	NA	NA	NA	-90996	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.000000	0.447761	5(CCTCTTATAGCT,+,0.00)
mm_78084.1	chr9	17047142	17047342	+	1	NA	NA	NA	-669011	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.005000	0.417910	
mm_60291.1	chr7	43998815	43999015	+	1	NA	NA	NA	3038	NM_010640	16613	Mm.443378	NM_010640	ENSMUSG00000044485	Klk1b11	Klk11|mGK-11	kallikrein 1-related peptidase b11	protein-coding	0.030000	0.557214	
mm_135241.1	chr16	36990358	36990558	-	1	NA	NA	NA	-11322	NM_001037321	207215	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0.015000	0.582090	
mm_9601.1	chr1	175607888	175608088	-	1	NA	NA	NA	17647	NM_010209	14194	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	0.035000	0.507463	
mm_33694.1	chr4	133518896	133519096	+	1	NA	NA	NA	33	NM_133707	69073	Mm.299081	NM_133707	ENSMUSG00000037600	Kdf1	1810019J16Rik	keratinocyte differentiation factor 1	protein-coding	0.120000	0.771144	
mm_67191.1	chr7	73941489	73941689	-	1	NA	NA	NA	72093	NM_009181	20450	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0.015000	0.323383	
mm_20551.1	chr2	131071054	131071254	-	1	NA	NA	NA	-7340	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.015000	0.572139	
mm_61080.1	chr7	51621993	51622193	+	1	NA	NA	NA	263	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.030000	0.517413	
mm_92472.1	chr10	78043509	78043709	-	1	NA	NA	NA	1	NM_001271552	11634	Mm.35300	NM_009646	ENSMUSG00000000731	Aire	-	autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	protein-coding	0.075000	0.592040	
mm_41212.1	chr5	88565226	88565426	+	1	NA	NA	NA	286	NM_001289775	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.165000	0.791045	
mm_102246.1	chr11	55109331	55109531	-	1	NA	NA	NA	11446	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.025000	0.572139	
mm_38319.1	chr4	137325455	137325655	-	1	NA	NA	NA	32204	NM_009861	12540	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.030000	0.427861	25(GTGTTTTTAAGG,-,0.00),27(GTTTTTAAGGGT,+,0.00),45(TCCTTTATGGAG,+,0.00)
mm_172723.1	chr8	72445225	72445425	+	1	NA	NA	NA	1445	NM_028170	72254	Mm.30136	NM_028170	ENSMUSG00000052794	1700030K09Rik	-	RIKEN cDNA 1700030K09 gene	protein-coding	0.015000	0.512438	
mm_55155.1	chr6	51470949	51471149	-	1	NA	NA	NA	433	NM_007624	12417	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	0.130000	0.766169	
mm_77404.1	chr8	120537550	120537750	-	1	NA	NA	NA	241	NM_001145896	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.135000	0.741294	
mm_81554.1	chr9	110343974	110344174	+	1	NA	NA	NA	10718	NM_001001144	235623	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0.020000	0.447761	
mm_46481.1	chr5	105131827	105132027	-	1	NA	NA	NA	7625	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.422886	
mm_134323.1	chr16	16291936	16292136	-	1	NA	NA	NA	-10929	NR_038046	70120	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	0.040000	0.477612	-36(GGGTATTTAAGC,-,0.00)
mm_58632.1	chr7	5093762	5093962	+	1	NA	NA	NA	13627	NM_001252454	13854	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0.025000	0.552239	
mm_75284.1	chr8	41020443	41020643	-	1	NA	NA	NA	3075	NR_015457	78849	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	0.005000	0.388060	
mm_104702.1	chr11	97995964	97996164	-	1	NA	NA	NA	109	NM_207231	217151	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.040000	0.527363	
mm_166459.1	chr5	139372150	139372350	-	1	NA	NA	NA	-2505	NR_029768	723898		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0.105000	0.661692	
mm_71145.1	chr8	39159257	39159457	+	1	NA	NA	NA	-138623	NR_044988	621335	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	0.005000	0.328358	
mm_98196.1	chr11	87795120	87795320	+	1	NA	NA	NA	1436	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.035000	0.597015	
mm_91651.1	chr10	42502737	42502937	-	1	NA	NA	NA	783	NM_017472	54198	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.035000	0.497512	
mm_171789.1	chr5	114356744	114356944	+	1	NA	NA	NA	23661	NM_001159941	330171	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	0.020000	0.562189	
mm_14484.1	chr2	131561545	131561745	+	1	NA	NA	NA	640	NM_013460	11550	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	0.065000	0.601990	
mm_45270.1	chr5	64610600	64610800	-	1	NA	NA	NA	-1	NR_045078	100042198	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0.025000	0.666667	
mm_136186.1	chr16	88962848	88963048	-	1	NA	NA	NA	-75	NM_183296	71369	Mm.251757	NM_130872	ENSMUSG00000096534	Krtap16-3	5430404J20Rik|Krtap16-10	keratin associated protein 16-3	protein-coding	0.010000	0.338308	42(GGGTATAAAAGC,-,0.00)
mm_118167.1	chr13	105294724	105294924	-	1	NA	NA	NA	-1810	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.020000	0.437811	
mm_125268.1	chr15	35591752	35591952	+	1	NA	NA	NA	69066	NR_035527	100316736		NR_035527	ENSMUSG00000076333	Mir599	mmu-mir-599	microRNA 599	ncRNA	0.000000	0.353234	
mm_106876.1	chr12	8010719	8010919	+	1	NA	NA	NA	33142	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.383085	
mm_147788.1	chr18	61639780	61639980	-	1	NA	NA	NA	227	NR_045420	545261	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0.020000	0.572139	
mm_5640.1	chr1	40444629	40444829	-	1	NA	NA	NA	5100	NM_010743	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.005000	0.437811	
mm_169622.1	chr15	39403314	39403514	-	1	NA	NA	NA	205128	NM_053271	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.005000	0.452736	
mm_97970.1	chr11	83852052	83852252	+	1	NA	NA	NA	-808	NM_001291269	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.070000	0.601990	
mm_146071.1	chr18	70474871	70475071	+	1	NA	NA	NA	2305	NM_001289650	170461	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	0.000000	0.437811	57(TGGTTTATAAAG,-,0.00),59(GTTTATAAAGAG,+,0.00)
mm_69627.1	chr7	137314738	137314938	-	1	NA	NA	NA	-393	NM_010096	13593	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.055000	0.601990	
mm_119208.1	chr14	32878281	32878481	+	1	NA	NA	NA	21625	NM_178791	320736	Mm.187910	NM_178791	ENSMUSG00000050666	Vstm4	E130203B14Rik	V-set and transmembrane domain containing 4	protein-coding	0.025000	0.537313	
mm_21481.1	chr2	162932345	162932545	-	1	NA	NA	NA	937	NM_026499	67996	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	0.025000	0.557214	
mm_133378.1	chr16	84711755	84711955	+	1	NA	NA	NA	-1168	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.000000	0.333333	
mm_107215.1	chr12	26445111	26445311	+	1	NA	NA	NA	11241	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.010000	0.368159	
mm_60641.1	chr7	44849004	44849204	+	1	NA	NA	NA	-25	NM_001042655	233204	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	0.075000	0.552239	
mm_129494.1	chr15	78804271	78804471	-	1	NA	NA	NA	-1329	NM_130859	105844	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	0.005000	0.487562	
mm_64394.1	chr7	142489308	142489508	+	1	NA	NA	NA	-9428	NM_001347549	21957	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	0.005000	0.452736	
mm_68352.1	chr7	106509964	106510164	-	1	NA	NA	NA	-68991	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.005000	0.393035	
mm_134181.1	chr16	10960813	10961013	-	1	NA	NA	NA	32208	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.030000	0.567164	84(TCTTTTAGGGGG,+,0.00)
mm_64722.1	chr7	4658871	4659071	-	1	NA	NA	NA	-21	NM_172894	243819	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.110000	0.691542	
mm_123522.1	chr14	66561463	66561663	-	1	NA	NA	NA	-73688	NM_001271759	11549	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	0.010000	0.383085	-31(CTTTAAATAGGC,+,0.00)
mm_48271.1	chr5	137962880	137963080	-	1	NA	NA	NA	-21	NM_080450	118446	Mm.332771	NM_080450	ENSMUSG00000056966	Gjc3	Cx29|Gje1	gap junction protein, gamma 3	protein-coding	0.020000	0.547264	-61(TCTTTTATGCTG,+,0.00)
mm_134226.1	chr16	11254340	11254540	-	1	NA	NA	NA	5	NR_035466	100316833		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	0.110000	0.656716	
mm_35112.1	chr4	9668991	9669191	-	1	NA	NA	NA	71	NM_023066	65973	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.115000	0.701493	
mm_135851.1	chr16	59557277	59557477	-	1	NA	NA	NA	-1625	NM_174848	224273	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	0.025000	0.467662	
mm_49261.1	chr6	17463804	17464004	+	1	NA	NA	NA	-53	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.140000	0.756219	
mm_139614.1	chr17	57360950	57361150	+	1	NA	NA	NA	2364	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.477612	28(CTCTTTAAAAAC,-,0.00)
mm_20015.1	chr2	119271119	119271319	-	1	NA	NA	NA	7	NM_145530	228543	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	0.070000	0.671642	
mm_145244.1	chr18	51117613	51117813	+	1	NA	NA	NA	-185	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0.180000	0.815920	
mm_78595.1	chr9	37401925	37402125	+	1	NA	NA	NA	128	NM_001309390	74144	Mm.485070	NM_028783	ENSMUSG00000032125	Robo4	1200012D01Rik|AI593217	roundabout guidance receptor 4	protein-coding	0.025000	0.572139	
mm_39503.1	chr5	21194379	21194579	+	1	NA	NA	NA	8212	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.010000	0.273632	
mm_90398.1	chr10	127324685	127324885	+	1	NA	NA	NA	1058	NM_146011	216445	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.025000	0.527363	
mm_32363.1	chr4	105193018	105193218	+	1	NA	NA	NA	35771	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.020000	0.323383	
mm_166137.1	chr4	156192463	156192663	-	1	NA	NA	NA	4925	NM_021604	11603	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0.015000	0.592040	
mm_62506.1	chr7	102072428	102072628	+	1	NA	NA	NA	1309	NM_011644	102443351	Mm.292904	NM_011644	ENSMUSG00000070425	Xntrpc	Xndr-trpc2	Xndc1-transient receptor potential cation channel, subfamily C, member 2 readthrough	protein-coding	0.010000	0.422886	
mm_100158.1	chr11	116274074	116274274	+	1	NA	NA	NA	43	NM_146032	217337	Mm.29655	NM_146032	ENSMUSG00000020780	Srp68	2610024I03Rik	signal recognition particle 68	protein-coding	0.085000	0.656716	
mm_602.1	chr1	39900952	39901152	+	1	NA	NA	NA	139	NM_008696	26921	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.185000	0.840796	
mm_63193.1	chr7	125603494	125603694	+	1	NA	NA	NA	165	NM_021887	60504	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.025000	0.641791	
mm_26989.1	chr3	25704969	25705169	-	1	NA	NA	NA	448238	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.378109	
mm_41079.1	chr5	87674916	87675116	+	1	NA	NA	NA	8808	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.293532	
mm_92408.1	chr10	76719056	76719256	-	1	NA	NA	NA	6888	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.015000	0.542289	
mm_79751.1	chr9	62373093	62373293	+	1	NA	NA	NA	31850	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.005000	0.447761	
mm_82431.1	chr9	15045021	15045221	-	1	NA	NA	NA	357	NM_019482	55991	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.145000	0.756219	
mm_79567.1	chr9	58134116	58134316	+	1	NA	NA	NA	141	NM_001162476	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.020000	0.482587	
mm_53807.1	chr6	146888499	146888699	+	1	NA	NA	NA	105	NM_026221	67533	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	0.130000	0.761194	
mm_29069.1	chr3	103792511	103792711	-	1	NA	NA	NA	-1048	NM_001301304	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.005000	0.393035	-6(TTCCTTAAAAGG,-,0.00),-4(CCTTAAAAGGTA,+,0.00)
mm_87373.1	chr10	44268388	44268588	+	1	NA	NA	NA	149	NM_053069	11793	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0.115000	0.691542	
mm_14066.1	chr2	122738448	122738648	+	1	NA	NA	NA	43	NM_019788	18457	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	0.105000	0.611940	
mm_76384.1	chr8	84842438	84842638	-	1	NA	NA	NA	-1873	NM_009010	19358	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.005000	0.497512	
mm_159634.1	chr4	138777794	138777994	+	1	NA	NA	NA	2159	NM_011109	18782	Mm.71913	NM_011109	ENSMUSG00000041202	Pla2g2d	Splash|mGIID	phospholipase A2, group IID	protein-coding	0.035000	0.592040	
mm_137502.1	chr17	26997946	26998146	+	1	NA	NA	NA	-19989	NM_001251881	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.025000	0.487562	
mm_25407.1	chr3	107278943	107279143	+	1	NA	NA	NA	185	NM_026774	68576	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	0.105000	0.656716	
mm_12030.1	chr2	58194647	58194847	+	1	NA	NA	NA	30773	NR_045895	100042926	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	OTTMUSG00000012675	predicted gene 13546	ncRNA	0.025000	0.402985	-34(TACCTTTAAAGC,-,0.00),-32(CCTTTAAAGCAA,+,0.00)
mm_159783.1	chr5	106695875	106696075	-	1	NA	NA	NA	855	NM_026856	52397	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.085000	0.701493	
mm_109960.1	chr12	12492667	12492867	-	1	NA	NA	NA	-100292	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	0.005000	0.517413	-33(GGATATAAATGG,-,0.00)
mm_137838.1	chr17	30938456	30938656	+	1	NA	NA	NA	-16127	NM_177465	52020	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0.015000	0.422886	
mm_40914.1	chr5	75632538	75632738	+	1	NA	NA	NA	57647	NM_021099	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	KIT proto-oncogene receptor tyrosine kinase	protein-coding	0.005000	0.333333	-6(TTTTTTAAAGTC,+,0.00)
mm_162621.1	chr1	183418392	183418592	+	1	NA	NA	NA	22	NM_030175	78772	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0.020000	0.616915	
mm_159308.1	chr2	180499826	180500026	+	1	NA	NA	NA	-50	NM_018766	18216	Mm.301712	NM_018766	ENSMUSG00000027568	Ntsr1	NT-1R|NTR-1|NTR1	neurotensin receptor 1	protein-coding	0.095000	0.696517	
mm_167362.1	chr8	84945966	84946166	-	1	NA	NA	NA	-925	NM_144929	234542	Mm.461701	NM_144929	ENSMUSG00000048617	Rtbdn	A330096I21Rik|BC022744|Rtbnd	retbindin	protein-coding	0.115000	0.761194	
mm_22543.1	chr3	8923460	8923660	+	1	NA	NA	NA	297	NM_025434	66230	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.140000	0.751244	
mm_87.1	chr1	7088938	7089138	+	1	NA	NA	NA	118	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.150000	0.791045	
mm_47236.1	chr5	121451209	121451409	-	1	NA	NA	NA	1165	NM_026129	67397	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	0.015000	0.422886	-56(GACTCTAAAGGC,-,0.00)
mm_31066.1	chr4	41316758	41316958	+	1	NA	NA	NA	-1957	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.010000	0.527363	
mm_126578.1	chr15	82274960	82275160	+	1	NA	NA	NA	125	NM_011889	24050	Mm.309707	NM_011889	ENSMUSG00000022456	Sept3	3110018K01Rik|AV154067|B530002E20Rik|Sep3	septin 3	protein-coding	0.095000	0.671642	
mm_154888.1	chrX	20798303	20798503	+	1	NA	NA	NA	-50140	NM_009703	11836	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	0.040000	0.562189	56(TCCTTAATAGGG,+,0.00)
mm_110441.1	chr12	50411327	50411527	-	1	NA	NA	NA	237796	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding	0.015000	0.288557	
mm_46563.1	chr5	107089927	107090127	-	1	NA	NA	NA	125466	NM_001271566	12545	Mm.20842	NM_009863	ENSMUSG00000029283	Cdc7	AI597260|Cdc7l1|muCdc7	cell division cycle 7 (S. cerevisiae)	protein-coding	0.015000	0.527363	
mm_104079.1	chr11	86586932	86587132	-	1	NA	NA	NA	-2874	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.432836	
mm_89549.1	chr10	94688565	94688765	+	1	NA	NA	NA	-52	NR_015524	67723	Mm.116284	NR_015524	ENSMUSG00000097164	Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	0.165000	0.786070	
mm_167397.1	chr8	95311485	95311685	+	1	NA	NA	NA	-13	NM_028532	73407	Mm.472783	NM_028532	ENSMUSG00000090206	Tepp	1700055M20Rik	testis, prostate and placenta expressed	protein-coding	0.015000	0.577114	
mm_114762.1	chr13	86160030	86160230	+	1	NA	NA	NA	-113335	NM_007749	12867	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	0.000000	0.417910	
mm_113575.1	chr13	40553224	40553424	+	1	NA	NA	NA	-174484	NR_125899	102633805		NR_125899	ENSMUSG00000097752	Gm26688	Tfap2a-as1	predicted gene, 26688	ncRNA	0.005000	0.412935	
mm_82382.1	chr9	14643463	14643663	-	1	NA	NA	NA	-28563	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.015000	0.527363	
mm_151953.1	chr19	5801225	5801425	-	1	NA	NA	NA	1347	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.025000	0.527363	-86(GCTTTTAAAATC,+,0.00),-85(CTTTTAAAATCC,+,0.00)
mm_111191.1	chr12	84177287	84177487	-	1	NA	NA	NA	16628	NM_001163502	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.015000	0.577114	
mm_3703.1	chr1	153874245	153874445	+	1	NA	NA	NA	0	NM_001008426	433365	Mm.229362	NM_001008426	ENSMUSG00000043282	Teddm1b	EG433365|Gm5531	transmembrane epididymal protein 1B	protein-coding	0.015000	0.427861	63(CTTTTTATACAA,+,0.00)
mm_17090.1	chr2	23025990	23026190	-	1	NA	NA	NA	14151	NM_001077192	11308	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.005000	0.243781	
mm_113070.1	chr13	23756890	23757090	+	1	NA	NA	NA	53	NM_178193	326620	Mm.261642	NM_178193	ENSMUSG00000069266	Hist1h4b	-	histone cluster 1, H4b	protein-coding	0.040000	0.502488	
mm_84802.1	chr9	77251776	77251976	-	1	NA	NA	NA	95994	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.025000	0.502488	
mm_36360.1	chr4	76141981	76142181	-	1	NA	NA	NA	-863795	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.005000	0.457711	
mm_123152.1	chr14	57103198	57103398	-	1	NA	NA	NA	1404	NM_008125	14619	Mm.390683	NM_008125	ENSMUSG00000046352	Gjb2	AI325222|Cnx26|Cx26|Gjb-2	gap junction protein, beta 2	protein-coding	0.010000	0.487562	66(GGCCATTTAAGA,-,0.00)
mm_45587.1	chr5	74262596	74262796	-	1	NA	NA	NA	67370	NM_026878	68939	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	0.010000	0.557214	
mm_52914.1	chr6	122826600	122826800	+	1	NA	NA	NA	-4677	NR_106090	102465710		NR_106090	ENSMUSG00000106580	Mir7231	mmu-mir-7231	microRNA 7231	ncRNA	0.035000	0.532338	-32(GAGCTTTAAAGG,-,0.00),-30(GCTTTAAAGGTG,+,0.00)
mm_138762.1	chr17	37050877	37051077	+	1	NA	NA	NA	5011	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.075000	0.726368	
mm_117107.1	chr13	60176974	60177174	-	1	NA	NA	NA	461	NM_008086	14451	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	0.155000	0.756219	
mm_123590.1	chr14	67308099	67308299	-	1	NA	NA	NA	6512	NM_001037931	628416	Mm.390723	NM_001037931		Gm6878	EG628416	predicted gene 6878	protein-coding	0.025000	0.557214	
mm_5217.1	chr1	13669690	13669890	-	1	NA	NA	NA	1019	NM_001011873	381246	Mm.311142	NM_001011873	ENSMUSG00000067813	Xkr9	Gm1620|XRG9	X-linked Kx blood group related 9	protein-coding	0.025000	0.487562	37(TTCTCTATAAAG,-,0.00),57(GTCTCTAAAAGC,-,0.00)
mm_49024.1	chr6	4759459	4759659	+	1	NA	NA	NA	12253	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.005000	0.368159	
mm_95689.1	chr11	54304108	54304308	+	1	NA	NA	NA	4	NM_001033597	216739	Mm.267478	NM_144823	ENSMUSG00000020333	Acsl6	A330035H04Rik|AW050338|Facl6|LACS|Lacsl|mKIAA0837	acyl-CoA synthetase long-chain family member 6	protein-coding	0.130000	0.756219	
mm_18438.1	chr2	60881207	60881407	-	1	NA	NA	NA	131	NM_001141932	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.175000	0.786070	-2(ACTTTTAGGGCG,+,0.00)
mm_6271.1	chr1	69649347	69649547	-	1	NA	NA	NA	36513	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.005000	0.368159	
mm_26964.1	chr3	22076073	22076273	-	1	NA	NA	NA	-479	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.145000	0.786070	
mm_136101.1	chr16	85120487	85120687	-	1	NA	NA	NA	53120	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.025000	0.522388	
mm_129583.1	chr15	79742371	79742571	-	1	NA	NA	NA	65	NM_194342	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.160000	0.756219	
mm_104732.1	chr11	98328086	98328286	-	1	NA	NA	NA	1459	NM_010895	18013	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0.115000	0.706468	
mm_29203.1	chr3	106767290	106767490	-	1	NA	NA	NA	22759	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.005000	0.393035	
mm_144928.1	chr18	37707004	37707204	+	1	NA	NA	NA	-125	NM_033589	93714	Mm.247203	NM_033589	ENSMUSG00000103793	Pcdhga6	-	protocadherin gamma subfamily A, 6	protein-coding	0.015000	0.417910	
mm_118384.1	chr13	117033661	117033861	-	1	NA	NA	NA	-8245	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.015000	0.462687	
mm_124377.1	chr14	106486401	106486601	-	1	NA	NA	NA	19	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.005000	0.467662	
mm_65925.1	chr7	30243417	30243617	-	1	NA	NA	NA	-6752	NM_001289817	381867	Mm.483986	NM_001289817	ENSMUSG00000100512	Ovol3	Gm1903|movo3	ovo like zinc finger 3	protein-coding	0.015000	0.567164	
mm_45863.1	chr5	87929869	87930069	-	1	NA	NA	NA	4336	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.010000	0.472637	
mm_122294.1	chr14	34578535	34578735	-	1	NA	NA	NA	9972	NM_001039074	24131	Mm.29733	NM_011918	ENSMUSG00000021798	Ldb3	AW742271|PDLIM6|ZASP	LIM domain binding 3	protein-coding	0.035000	0.582090	
mm_126320.1	chr15	79693861	79694061	+	1	NA	NA	NA	3065	NM_013818	14904	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	0.045000	0.577114	
mm_48185.1	chr5	137476987	137477187	-	1	NA	NA	NA	-23	NM_011741	22635	Mm.7984	NM_011741	ENSMUSG00000079173	Zan	Zan-test	zonadhesin	protein-coding	0.010000	0.462687	78(CTGTCTAAAAGG,-,0.00)
mm_44505.1	chr5	23922822	23923022	-	1	NA	NA	NA	70689	NR_028536	100217436		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	0.010000	0.472637	
mm_40844.1	chr5	73293218	73293418	+	1	NA	NA	NA	524	NM_001159888	68095	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	0.010000	0.402985	
mm_31150.1	chr4	43401163	43401363	+	1	NA	NA	NA	-5239	NM_199057	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.030000	0.572139	
mm_127966.1	chr15	11996853	11997053	-	1	NA	NA	NA	-946	NM_011294	20024	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.020000	0.437811	
mm_79895.1	chr9	65332476	65332676	+	1	NA	NA	NA	-13492	NM_016688	50996	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	0.020000	0.427861	1(TCCTTTAAACGG,+,0.00),2(CCTTTAAACGGC,+,0.00)
mm_127542.1	chr15	102106057	102106257	+	1	NA	NA	NA	3169	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.005000	0.572139	-31(CCTTAAATAGAG,+,0.00)
mm_145591.1	chr18	60985911	60986111	+	1	NA	NA	NA	22457	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.010000	0.502488	
mm_20352.1	chr2	127811797	127811997	-	1	NA	NA	NA	-19409	NR_015476	67885	Mm.27359	NM_175125	ENSMUSG00000051319	1500011K16Rik	-	RIKEN cDNA 1500011K16 gene	ncRNA	0.015000	0.417910	
mm_30175.1	chr3	144204808	144205008	-	1	NA	NA	NA	347	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.065000	0.601990	
mm_105669.1	chr11	107454676	107454876	-	1	NA	NA	NA	15944	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.025000	0.497512	
mm_124174.1	chr14	93812275	93812475	-	1	NA	NA	NA	76513	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.005000	0.467662	
mm_119636.1	chr14	51885648	51885848	+	1	NA	NA	NA	906	NM_001029990	52535	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding	0.015000	0.437811	
mm_130406.1	chr15	97976651	97976851	-	1	NA	NA	NA	12522	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.035000	0.552239	
mm_172442.1	chr7	29965521	29965721	-	1	NA	NA	NA	-13728	NM_178384	72723	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77	zinc finger protein 74	protein-coding	0.055000	0.542289	
mm_71752.1	chr8	65639764	65639964	+	1	NA	NA	NA	21339	NM_175188	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.000000	0.283582	
mm_148508.1	chr19	4214290	4214490	+	1	NA	NA	NA	1	NM_001310039	56708	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	0.085000	0.592040	1(GATTATTAAAGC,-,0.00)
mm_44133.1	chr5	149847660	149847860	+	1	NA	NA	NA	13	NR_045758	70969	Mm.78499	NR_045758	ENSMUSG00000107214	4930500F04Rik	4931407C17Rik	RIKEN cDNA 4930500F04 gene	ncRNA	0.005000	0.447761	
mm_114148.1	chr13	55369651	55369851	+	1	NA	NA	NA	19	NM_016758	51791	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	0.020000	0.512438	
mm_167131.1	chr7	126800057	126800257	-	1	NA	NA	NA	290	NM_001177308	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.035000	0.606965	79(GCCTTAAAACCC,+,0.00)
mm_43944.1	chr5	145127906	145128106	+	1	NA	NA	NA	12083	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.005000	0.383085	9(GCCTTTTAAAGA,-,0.00),10(CCTTTTAAAGAA,+,0.00)
mm_53749.1	chr6	145240368	145240568	+	1	NA	NA	NA	9763	NM_021284	16653	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	0.015000	0.447761	-7(CTCTTAAGAGCC,+,0.00)
mm_134541.1	chr16	19708387	19708587	-	1	NA	NA	NA	-2122	NM_177356	239739	Mm.258059	NM_177356	ENSMUSG00000041247	Lamp3	1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403	lysosomal-associated membrane protein 3	protein-coding	0.005000	0.437811	
mm_122415.1	chr14	41069103	41069303	-	1	NA	NA	NA	-129	NM_027717	71200	Mm.443973	NM_027717	ENSMUSG00000021791	Dydc2	4933428D01Rik	DPY30 domain containing 2	protein-coding	0.000000	0.422886	
mm_23940.1	chr3	84479431	84479631	+	1	NA	NA	NA	-40	NM_001205355	229474	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0.095000	0.666667	-39(CCTTATCTGGGC,+,0.00)
mm_128702.1	chr15	63479566	63479766	-	1	NA	NA	NA	-58	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA	0.000000	0.452736	
mm_108657.1	chr12	86421514	86421714	+	1	NA	NA	NA	-30	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.040000	0.592040	
mm_64634.1	chr7	3706681	3706881	-	1	NA	NA	NA	2740	NM_029767	76846	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	0.040000	0.507463	
mm_50967.1	chr6	60177566	60177766	+	1	NA	NA	NA	226041	NR_015565	208079	Mm.131226	NM_177329	ENSMUSG00000046764	A530053G22Rik	-	RIKEN cDNA A530053G22 gene	ncRNA	0.005000	0.358209	
mm_150869.1	chr19	45047710	45047910	+	1	NA	NA	NA	234	NM_001178013	94280	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.070000	0.641791	
mm_112209.1	chr12	113427264	113427464	-	1	NA	NA	NA	-62201	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.338308	
mm_104571.1	chr11	96943725	96943925	-	1	NA	NA	NA	194	NM_134021	103711	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding	0.085000	0.631841	
mm_86509.1	chr10	7654364	7654564	+	1	NA	NA	NA	-8907	NR_030698	320642	Mm.398806	NR_030698		A630066F11Rik	-	RIKEN cDNA A630066F11 gene	ncRNA	0.010000	0.487562	
mm_46233.1	chr5	99217699	99217899	-	1	NA	NA	NA	35128	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.015000	0.412935	
mm_33432.1	chr4	130056671	130056871	+	1	NA	NA	NA	8931	NM_028266	107581	Mm.41860	NM_028266	ENSMUSG00000040690	Col16a1	2700007F12Rik|A530052M23Rik|AI838662|CA1F	collagen, type XVI, alpha 1	protein-coding	0.005000	0.512438	
mm_128306.1	chr15	37780235	37780435	-	1	NA	NA	NA	11665	NM_001170866	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.020000	0.507463	
mm_164040.1	chr14	87416294	87416494	+	1	NA	NA	NA	-189	NM_172605	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0.100000	0.706468	
mm_5119.1	chr1	7136515	7136715	-	1	NA	NA	NA	47695	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.015000	0.452736	
mm_40333.1	chr5	43910843	43911043	+	1	NA	NA	NA	42134	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.005000	0.353234	
mm_136244.1	chr16	90934730	90934930	-	1	NA	NA	NA	19	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.105000	0.671642	
mm_155693.1	chrX	94234890	94235090	+	1	NA	NA	NA	60	NM_001039061	236904	Mm.115533	NM_153165	ENSMUSG00000043929	Klhl15	6330500C13Rik	kelch-like 15	protein-coding	0.095000	0.691542	
mm_2687.1	chr1	127320047	127320247	+	1	NA	NA	NA	115161	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.025000	0.562189	
mm_84107.1	chr9	58313061	58313261	-	1	NA	NA	NA	51	NM_010729	16949	Mm.250492	NM_010729	ENSMUSG00000032334	Loxl1	Loxl	lysyl oxidase-like 1	protein-coding	0.040000	0.646766	
mm_75317.1	chr8	41374540	41374740	-	1	NA	NA	NA	57	NM_019734	11886	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	0.075000	0.681592	
mm_42019.1	chr5	108269196	108269396	+	1	NA	NA	NA	399	NM_026106	13486	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0.085000	0.641791	
mm_163595.1	chr13	41568931	41569131	-	1	NA	NA	NA	-37185	NM_001163572	621976	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.020000	0.477612	
mm_72240.1	chr8	75016138	75016338	+	1	NA	NA	NA	16	NM_001316754	70823	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0.010000	0.437811	
mm_6861.1	chr1	84278208	84278408	-	1	NA	NA	NA	6337	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.000000	0.412935	
mm_101524.1	chr11	33039678	33039878	-	1	NA	NA	NA	107622	NM_008005	14172	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	0.050000	0.472637	
mm_132822.1	chr16	45224082	45224282	+	1	NA	NA	NA	-155	NM_001037719	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.015000	0.467662	
mm_168844.1	chr12	23697985	23698185	+	1	NA	NA	NA	399184	NM_001256489	66808	Mm.379124	NM_001256489	ENSMUSG00000073158	9030624G23Rik	-	RIKEN cDNA 9030624G23 gene	protein-coding	0.025000	0.457711	
mm_116873.1	chr13	55020031	55020231	-	1	NA	NA	NA	688	NM_001206390	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.015000	0.507463	
mm_67096.1	chr7	69907951	69908151	-	1	NA	NA	NA	411957	NR_045940	73796	Mm.410832	NR_045940	ENSMUSG00000108885	4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA	0.000000	0.412935	
mm_72434.1	chr8	83084221	83084421	+	1	NA	NA	NA	-81031	NM_001111304	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.005000	0.452736	
mm_84126.1	chr9	58741462	58741662	-	1	NA	NA	NA	-3	NM_028598	73673	Mm.205196	NM_028598	ENSMUSG00000074269	Rec114	2410076I21Rik|4930527A11Rik	REC114 meiotic recombination protein	protein-coding	0.065000	0.577114	
mm_91218.1	chr10	21994433	21994633	-	1	NA	NA	NA	-133	NM_011361	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.075000	0.706468	
mm_83922.1	chr9	56620526	56620726	-	1	NA	NA	NA	15022	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.040000	0.567164	
mm_19489.1	chr2	93203348	93203548	-	1	NA	NA	NA	15864	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.020000	0.522388	
mm_130334.1	chr15	97730619	97730819	-	1	NA	NA	NA	686	NM_001168693	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.000000	0.532338	
mm_164911.1	chr18	73301450	73301650	+	1	NA	NA	NA	-271155	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.025000	0.507463	-34(CCCTATATAAAC,-,0.00)
mm_83453.1	chr9	45203972	45204172	-	1	NA	NA	NA	3	NM_145403	214523	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	0.015000	0.497512	
mm_21205.1	chr2	155640555	155640755	-	1	NA	NA	NA	17775	NR_030757	735275		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	0.025000	0.552239	
mm_78575.1	chr9	36726599	36726799	+	1	NA	NA	NA	-41	NM_007691	12649	Mm.16753	NM_007691	ENSMUSG00000032113	Chek1	C85740|Chk1|rad27	checkpoint kinase 1	protein-coding	0.075000	0.567164	
mm_152076.1	chr19	6851005	6851205	-	1	NA	NA	NA	7106	NM_001081291	78317	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.015000	0.592040	
mm_142500.1	chr17	46031777	46031977	-	1	NA	NA	NA	500	NM_001287058	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.125000	0.721393	
mm_115113.1	chr13	104109642	104109842	+	1	NA	NA	NA	-48	NM_144838	218544	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	0.110000	0.776119	
mm_95450.1	chr11	50325786	50325986	+	1	NA	NA	NA	-213	NM_001110500	12330	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	0.105000	0.636816	
mm_91418.1	chr10	32478664	32478864	-	1	NA	NA	NA	411151	NM_001013411	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding	0.000000	0.268657	
mm_44233.1	chr5	5265576	5265776	-	1	NA	NA	NA	392	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.020000	0.462687	
mm_110963.1	chr12	76822326	76822526	-	1	NA	NA	NA	98	NM_134050	104886	Mm.172847	NM_134050	ENSMUSG00000021062	Rab15	2310012G06Rik|AI840042	RAB15, member RAS oncogene family	protein-coding	0.155000	0.800995	
mm_74997.1	chr8	27223724	27223924	-	1	NA	NA	NA	5764	NM_013462	11556	Mm.278475	NM_013462	ENSMUSG00000031489	Adrb3	Adrb-3	adrenergic receptor, beta 3	protein-coding	0.020000	0.527363	
mm_152481.1	chr19	11047937	11048137	-	1	NA	NA	NA	2529	NR_102366	107350	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.010000	0.432836	
mm_128444.1	chr15	50763106	50763306	-	1	NA	NA	NA	125843	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.308458	
mm_77949.1	chr9	7464042	7464242	+	1	NA	NA	NA	1	NM_032006	83995	Mm.156952	NM_032006	ENSMUSG00000043089	Mmp1a	MMP-1a|Mcol-A|Mcola	matrix metallopeptidase 1a (interstitial collagenase)	protein-coding	0.000000	0.477612	-34(CTCTATATAAAG,-,0.00)
mm_165149.1	chr2	19388951	19389151	+	1	NA	NA	NA	17415	NM_029619	76467	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	0.035000	0.477612	
mm_85145.1	chr9	95845150	95845350	-	1	NA	NA	NA	29	NM_001033210	102502	Mm.11869	NM_001033210	ENSMUSG00000049493	Pls1	AI427122	plastin 1 (I-isoform)	protein-coding	0.110000	0.716418	
mm_160479.1	chr8	121651717	121651917	-	1	NA	NA	NA	116	NM_080855	142682	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0.090000	0.706468	
mm_10100.1	chr2	3453608	3453808	+	1	NA	NA	NA	21278	NM_022724	64707	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 homolog 2 (Drosophila)	protein-coding	0.025000	0.462687	
mm_143843.1	chr17	84127015	84127215	-	1	NA	NA	NA	48455	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.015000	0.582090	
mm_92666.1	chr10	80433508	80433708	-	1	NA	NA	NA	45	NM_001164150	21423	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.140000	0.766169	
mm_159307.1	chr2	180289771	180289971	-	1	NA	NA	NA	8	NM_173031	271887	Mm.246640	NM_173031	ENSMUSG00000038980	Rbbp8nl	4732416F18	RBBP8 N-terminal like	protein-coding	0.035000	0.592040	
mm_30497.1	chr3	157888825	157889025	-	1	NA	NA	NA	36138	NM_145953	107869	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	0.015000	0.427861	
mm_14699.1	chr2	142219548	142219748	+	1	NA	NA	NA	681816	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.000000	0.298507	
mm_97624.1	chr11	78957479	78957679	+	1	NA	NA	NA	27345	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.020000	0.562189	
mm_47160.1	chr5	120694497	120694697	-	1	NA	NA	NA	17072	NM_008052	14357	Mm.1645	NM_008052	ENSMUSG00000029603	Dtx1	Fxit1|mKIAA4160	deltex 1, E3 ubiquitin ligase	protein-coding	0.115000	0.771144	
mm_85707.1	chr9	108139271	108139471	-	1	NA	NA	NA	2516	NR_126077	76873	Mm.436935	NR_126077	ENSMUSG00000102224	4930447F24Rik	-	RIKEN cDNA 4930447F24 gene	ncRNA	0.040000	0.626866	
mm_21764.1	chr2	164840439	164840639	-	1	NA	NA	NA	6766	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.025000	0.542289	
mm_125325.1	chr15	38518411	38518611	+	1	NA	NA	NA	755	NM_001301688	54375	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.080000	0.716418	
mm_10055.1	chr1	193242257	193242457	-	1	NA	NA	NA	3	NM_001044751	15483	Mm.28328	NM_008288	ENSMUSG00000016194	Hsd11b1	-	hydroxysteroid 11-beta dehydrogenase 1	protein-coding	0.025000	0.577114	
mm_58994.1	chr7	19137430	19137630	+	1	NA	NA	NA	11666	NM_026111	67369	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	0.010000	0.472637	
mm_57218.1	chr6	122952309	122952509	-	1	NA	NA	NA	-106	NM_001204241	73149	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.020000	0.537313	
mm_95920.1	chr11	58221007	58221207	+	1	NA	NA	NA	6130	NM_019440	54396	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	0.010000	0.472637	
mm_76423.1	chr8	84977781	84977981	-	1	NA	NA	NA	867	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.075000	0.706468	
mm_167185.1	chr7	141997439	141997639	+	1	NA	NA	NA	5360	NR_037291	100526509		NR_037291	ENSMUSG00000092652	Mir3104	mir-3104|mmu-mir-3104	microRNA 3104	ncRNA	0.005000	0.522388	
mm_65688.1	chr7	28372415	28372615	-	1	NA	NA	NA	147	NM_138752	101497	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.090000	0.701493	38(GTTTTAAGAGAC,+,0.00)
mm_64902.1	chr7	15967377	15967577	-	1	NA	NA	NA	58	NM_153068	259300	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0.080000	0.726368	
mm_13317.1	chr2	102675420	102675620	+	1	NA	NA	NA	16837	NM_001077514	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.010000	0.532338	
mm_109217.1	chr12	108761430	108761630	+	1	NA	NA	NA	-31781	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.010000	0.462687	49(CTGTTTAAAAGA,-,0.00)
mm_120949.1	chr14	76735279	76735479	+	1	NA	NA	NA	57811	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.005000	0.512438	
mm_136095.1	chr16	85079769	85079969	-	1	NA	NA	NA	93838	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.055000	0.547264	
mm_86713.1	chr10	18917181	18917381	+	1	NA	NA	NA	72210	NM_022032	64058	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	0.000000	0.427861	
mm_38157.1	chr4	135211718	135211918	-	1	NA	NA	NA	60942	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.015000	0.412935	
mm_10494.1	chr2	14873603	14873803	+	1	NA	NA	NA	47	NM_001309519	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.000000	0.477612	
mm_9314.1	chr1	171645862	171646062	-	1	NA	NA	NA	3037	NM_001347184	75345	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	0.000000	0.393035	
mm_66342.1	chr7	43473428	43473628	-	1	NA	NA	NA	10295	NM_001290316	75690	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.005000	0.562189	
mm_90334.1	chr10	127079021	127079221	+	1	NA	NA	NA	214	NM_001033263	216439	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.045000	0.626866	
mm_136043.1	chr16	78374924	78375124	-	1	NA	NA	NA	1733	NR_002700	654432	Mm.458574	NR_002700	ENSMUSG00000044645	Gm7334	EG654432	B-cell translocation gene 3 pseudogene	pseudo	0.020000	0.328358	-57(ATCTTTAAAAAC,-,0.00),-55(CTTTAAAAACCG,+,0.00)
mm_137311.1	chr17	24878695	24878895	+	1	NA	NA	NA	25	NM_008340	16005	Mm.3135	NM_008340	ENSMUSG00000046070	Igfals	ALS|Albs|mKIAA4111	insulin-like growth factor binding protein, acid labile subunit	protein-coding	0.015000	0.621891	
mm_30433.1	chr3	153298565	153298765	-	1	NA	NA	NA	-16	NR_126464	75489	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0.015000	0.512438	
mm_161050.1	chr12	52028004	52028204	-	1	NA	NA	NA	-41	NM_008159	14762	Mm.12890	NM_008159	ENSMUSG00000035148	Gpr33	-	G protein-coupled receptor 33	protein-coding	0.010000	0.447761	
mm_133375.1	chr16	84710373	84710573	+	1	NA	NA	NA	-2550	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.025000	0.462687	
mm_91629.1	chr10	42018282	42018482	-	1	NA	NA	NA	0	NM_001034858	213402	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.105000	0.711443	
mm_98902.1	chr11	98022697	98022897	+	1	NA	NA	NA	-170	NM_001282978	12295	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	0.085000	0.691542	
mm_90813.1	chr10	7833183	7833383	-	1	NA	NA	NA	813	NM_172785	237256	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	0.000000	0.457711	
mm_50694.1	chr6	51597532	51597732	+	1	NA	NA	NA	53109	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.005000	0.462687	
mm_58076.1	chr6	136939494	136939694	-	1	NA	NA	NA	-67	NM_001301303	11857	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	0.035000	0.482587	
mm_52172.1	chr6	99172306	99172506	+	1	NA	NA	NA	94109	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.015000	0.462687	
mm_52762.1	chr6	120836176	120836376	+	1	NA	NA	NA	46	NM_153516	94044	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	0.105000	0.706468	
mm_165875.1	chr4	40766359	40766559	-	1	NA	NA	NA	-8574	NM_021535	74255	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.005000	0.537313	
mm_163005.1	chr11	35834367	35834567	-	1	NA	NA	NA	61	NM_025936	104458	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.095000	0.661692	
mm_116252.1	chr13	33967863	33968063	-	1	NA	NA	NA	810	NM_001163242	18105	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	NAD(P)H dehydrogenase, quinone 2	protein-coding	0.005000	0.373134	
mm_167349.1	chr8	83608120	83608320	+	1	NA	NA	NA	45	NM_018808	81489	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.130000	0.721393	45(GGGTATATAGAG,-,0.00)
mm_128222.1	chr15	36374248	36374448	-	1	NA	NA	NA	-91201	NM_013923	30945	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0.010000	0.577114	
mm_121686.1	chr14	13906404	13906604	-	1	NA	NA	NA	54809	NM_001285780	66231	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.000000	0.482587	
mm_50309.1	chr6	47835663	47835863	+	1	NA	NA	NA	102	NM_027477	272347	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	0.115000	0.701493	
mm_14482.1	chr2	131538407	131538607	+	1	NA	NA	NA	23778	NM_013460	11550	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	0.020000	0.532338	
mm_36358.1	chr4	76102747	76102947	-	1	NA	NA	NA	-824561	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.000000	0.378109	
mm_124239.1	chr14	101477346	101477546	-	1	NA	NA	NA	131745	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.015000	0.522388	
mm_160030.1	chr6	131316298	131316498	-	1	NA	NA	NA	-2571	NM_172891	243659	Mm.20114	NM_172891	ENSMUSG00000032899	Styk1	9130025L13|AI326477|Nok	serine/threonine/tyrosine kinase 1	protein-coding	0.000000	0.447761	
mm_132507.1	chr16	36961918	36962118	+	1	NA	NA	NA	17118	NM_001037321	207215	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0.020000	0.597015	
mm_122229.1	chr14	33162861	33163061	-	1	NA	NA	NA	22105	NM_001146022	545030	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.020000	0.462687	
mm_160354.1	chr8	21456399	21456599	-	1	NA	NA	NA	18	NM_001177518	665927	Mm.422762	NM_001177518	ENSMUSG00000079114	Gm7849	EG665927	predicted gene 7849	protein-coding	0.005000	0.522388	-95(CCGTATAAATGC,-,0.00)
mm_80790.1	chr9	95990906	95991106	+	1	NA	NA	NA	36246	NM_001311130	24127	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	0.015000	0.318408	
mm_33327.1	chr4	129106697	129106897	+	1	NA	NA	NA	1249	NM_001290706	66260	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.010000	0.572139	
mm_155544.1	chrX	74309862	74310062	+	1	NA	NA	NA	-3071	NM_138607	108160	Mm.4370	NM_138607	ENSMUSG00000001962	Fam50a	D0HXS9928E|XAP-5	family with sequence similarity 50, member A	protein-coding	0.015000	0.537313	
mm_93280.1	chr10	96077792	96077992	-	1	NA	NA	NA	137229	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.005000	0.328358	48(CCTTTAATAGTG,+,0.00)
mm_33761.1	chr4	134343796	134343996	+	1	NA	NA	NA	430	NM_001346578	230810	Mm.358876	NM_001039677	ENSMUSG00000028836	Slc30a2	ZnT-2|Znt2	solute carrier family 30 (zinc transporter), member 2	protein-coding	0.035000	0.587065	
mm_113872.1	chr13	48662863	48663063	+	1	NA	NA	NA	-73	NM_007526	12022	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	0.190000	0.865672	
mm_107567.1	chr12	44269145	44269345	+	1	NA	NA	NA	91	NM_026164	67452	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	0.125000	0.771144	
mm_101340.1	chr11	23520019	23520219	-	1	NA	NA	NA	-177	NM_001110133	67358	Mm.87328	NM_026105	ENSMUSG00000020286	1700093K21Rik	-	RIKEN cDNA 1700093K21 gene	protein-coding	0.010000	0.542289	
mm_45179.1	chr5	51567625	51567825	-	1	NA	NA	NA	0	NR_132764	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.010000	0.482587	
mm_31036.1	chr4	40964761	40964961	+	1	NA	NA	NA	-6045	NM_001290449	74164	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	0.005000	0.298507	
mm_143986.1	chr17	87628150	87628350	-	1	NA	NA	NA	-7729	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.020000	0.467662	
mm_173308.1	chrY	88061632	88061832	+	1	NA	NA	NA	-2532213	NM_001160131	100040911	Mm.457993	NM_001160131	ENSMUSG00000095650	Gm20854	-	predicted gene, 20854	protein-coding	0.005000	0.393035	
mm_167956.1	chrX	141437747	141437947	+	1	NA	NA	NA	36229	NM_053185	94216	Mm.155586	NM_053185	ENSMUSG00000031273	Col4a6	BB116301	collagen, type IV, alpha 6	protein-coding	0.020000	0.407960	
mm_61648.1	chr7	80401190	80401390	+	1	NA	NA	NA	1522	NM_011046	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.000000	0.492537	
mm_21507.1	chr2	163624455	163624655	-	1	NA	NA	NA	17343	NM_001305803	76080	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.000000	0.383085	
mm_160912.1	chr11	82954541	82954741	+	1	NA	NA	NA	2539	NM_183201	327978	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	0.005000	0.437811	
mm_83761.1	chr9	51963398	51963598	-	1	NA	NA	NA	104	NM_007996	14148	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	0.145000	0.731343	
mm_36716.1	chr4	98699006	98699206	-	1	NA	NA	NA	-27648	NM_001081202	381591	Mm.34340	NM_001081202	ENSMUSG00000087166	L1td1	AA546746|AB211064|D76865|ECAT11	LINE-1 type transposase domain containing 1	protein-coding	0.005000	0.552239	
mm_125209.1	chr15	34050331	34050531	+	1	NA	NA	NA	-32288	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.010000	0.467662	
mm_168954.1	chr12	78350839	78351039	+	1	NA	NA	NA	124284	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.035000	0.497512	
mm_46392.1	chr5	104022022	104022222	-	1	NA	NA	NA	-326	NM_053262	114664	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0.025000	0.527363	
mm_104545.1	chr11	96773249	96773449	-	1	NA	NA	NA	4206	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.010000	0.532338	
mm_58730.1	chr7	13029681	13029881	+	1	NA	NA	NA	4996	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.020000	0.597015	
mm_29233.1	chr3	107213427	107213627	-	1	NA	NA	NA	8205	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.532338	
mm_134220.1	chr16	11254104	11254304	-	1	NA	NA	NA	121	NM_001130008	14852	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	0.075000	0.621891	
mm_84125.1	chr9	58657793	58657993	-	1	NA	NA	NA	75653	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.005000	0.497512	
mm_51148.1	chr6	70663153	70663353	+	1	NA	NA	NA	128922	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.497512	-15(GCTTCTTTAAGG,-,0.00)
mm_47566.1	chr5	124476342	124476542	-	1	NA	NA	NA	1793	NM_030259	80291	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.005000	0.442786	
mm_107537.1	chr12	40560296	40560496	+	1	NA	NA	NA	114343	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.005000	0.368159	
mm_144003.1	chr17	88065763	88065963	-	1	NA	NA	NA	-578	NM_001081034	225055	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.075000	0.631841	
mm_126465.1	chr15	81044595	81044795	+	1	NA	NA	NA	60352	NM_153049	223701	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.030000	0.502488	
mm_47859.1	chr5	134565454	134565654	-	1	NA	NA	NA	-5383	NM_001013751	214292	Mm.425290	NM_001013751	ENSMUSG00000085957	Syna	Gm453|Gm52|syncytin-A	syncytin a	protein-coding	0.040000	0.472637	
mm_139621.1	chr17	57362583	57362783	+	1	NA	NA	NA	3997	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.417910	
mm_107833.1	chr12	69258077	69258277	+	1	NA	NA	NA	16345	NM_178253	271005	Mm.180969	NM_178253	ENSMUSG00000051890	Klhdc1	-	kelch domain containing 1	protein-coding	0.035000	0.452736	-31(GTTTATAAACGC,+,0.00)
mm_164702.1	chr17	51641953	51642153	+	1	NA	NA	NA	170001	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.015000	0.452736	
mm_133598.1	chr16	91464995	91465195	+	1	NA	NA	NA	-9	NR_077219	100503120	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.055000	0.601990	
mm_50256.1	chr6	42800550	42800750	+	1	NA	NA	NA	10609	NM_001011869	258207	Mm.377378	NM_001011869	ENSMUSG00000094192	Olfr452	MOR257-5P	olfactory receptor 452	protein-coding	0.000000	0.343284	
mm_50775.1	chr6	53680847	53681047	+	1	NA	NA	NA	107573	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.040000	0.547264	
mm_4921.1	chr1	190928426	190928626	+	1	NA	NA	NA	21	NR_037579	52477	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	0.090000	0.641791	
mm_22909.1	chr3	31038858	31039058	+	1	NA	NA	NA	-8	NR_105975	102465610		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0.025000	0.482587	
mm_101688.1	chr11	40694915	40695115	-	1	NA	NA	NA	188	NM_001199274	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.040000	0.487562	41(TAATTTAAAAGG,-,0.00)
mm_164732.1	chr17	66211431	66211631	+	1	NA	NA	NA	88011	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.010000	0.388060	
mm_152180.1	chr19	7418208	7418408	-	1	NA	NA	NA	683	NM_175381	108899	Mm.386838	NM_175381	ENSMUSG00000053080	2700081O15Rik	AI255177|AI848741|AW742297	RIKEN cDNA 2700081O15 gene	protein-coding	0.050000	0.547264	49(AGCCTTTAAAAG,-,0.00),50(GCCTTTAAAAGA,-,0.00),51(CCTTTAAAAGAC,+,0.00)
mm_63091.1	chr7	122365982	122366182	+	1	NA	NA	NA	76957	NM_008855	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.020000	0.547264	
mm_68224.1	chr7	104428440	104428640	-	1	NA	NA	NA	36653	NM_009099	20128	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.005000	0.288557	
mm_134338.1	chr16	16527292	16527492	-	1	NA	NA	NA	19	NM_001301818	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.015000	0.472637	
mm_165066.1	chr19	44396262	44396462	-	1	NA	NA	NA	11347	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.527363	
mm_123289.1	chr14	61556537	61556737	-	1	NA	NA	NA	249	NM_025697	66674	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0.120000	0.716418	
mm_55934.1	chr6	84588601	84588801	-	1	NA	NA	NA	5109	NM_175475	232174	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.120000	0.731343	
mm_98067.1	chr11	85885967	85886167	+	1	NA	NA	NA	-3996	NM_011536	21387	Mm.275336	NM_011536	ENSMUSG00000000094	Tbx4	3930401C23	T-box 4	protein-coding	0.040000	0.681592	
mm_100720.1	chr11	3913623	3913823	-	1	NA	NA	NA	941	NM_153142	103710	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0.115000	0.686567	
mm_17353.1	chr2	26608158	26608358	-	1	NA	NA	NA	-3841	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.015000	0.522388	
mm_116825.1	chr13	54607006	54607206	-	1	NA	NA	NA	4267	NM_028870	74325	Mm.290026	NM_028870	ENSMUSG00000047547	Cltb	2310046E19Rik|lcb	clathrin, light polypeptide (Lcb)	protein-coding	0.015000	0.572139	
mm_83679.1	chr9	50430263	50430463	-	1	NA	NA	NA	-64162	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.020000	0.562189	
mm_53939.1	chr6	4903821	4904021	-	1	NA	NA	NA	601	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.080000	0.656716	
mm_102187.1	chr11	54248458	54248658	-	1	NA	NA	NA	1341	NM_009969	12981	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	0.020000	0.492537	
mm_142474.1	chr17	45685984	45686184	-	1	NA	NA	NA	134	NM_198167	224807	Mm.157904	NM_198167	ENSMUSG00000036026	Tmem63b	BC026370	transmembrane protein 63b	protein-coding	0.070000	0.681592	
mm_130054.1	chr15	89173854	89174054	-	1	NA	NA	NA	-3	NM_001159521	140570	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.055000	0.592040	
mm_69564.1	chr7	135700452	135700652	-	1	NA	NA	NA	15827	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.005000	0.407960	
mm_82733.1	chr9	25210969	25211169	-	1	NA	NA	NA	-41370	NM_009859	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.000000	0.462687	
mm_48346.1	chr5	139325366	139325566	-	1	NA	NA	NA	-2	NM_172723	231821	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.230000	0.855721	
mm_60831.1	chr7	45708107	45708307	+	1	NA	NA	NA	2960	NM_016974	13170	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.035000	0.492537	
mm_147819.1	chr18	61786564	61786764	-	1	NA	NA	NA	-2	NM_178928	106877	Mm.26632	NM_178928	ENSMUSG00000033032	Afap1l1	AI173486	actin filament associated protein 1-like 1	protein-coding	0.100000	0.721393	
mm_10920.1	chr2	25423142	25423342	+	1	NA	NA	NA	0	NM_001289453	14347	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	0.020000	0.562189	
mm_23536.1	chr3	60876910	60877110	+	1	NA	NA	NA	-125775	NM_008772	18441	Mm.281452	NM_008772	ENSMUSG00000027765	P2ry1	P2Y1	purinergic receptor P2Y, G-protein coupled 1	protein-coding	0.035000	0.492537	
mm_14239.1	chr2	127695801	127696001	+	1	NA	NA	NA	33996	NM_145532	228576	Mm.133036	NM_145532	ENSMUSG00000027377	Mall	BC012256|BENE	mal, T cell differentiation protein-like	protein-coding	0.000000	0.517413	
mm_146270.1	chr18	77879410	77879610	+	1	NA	NA	NA	-58957	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.005000	0.517413	
mm_159713.1	chr5	32238966	32239166	+	1	NA	NA	NA	-18	NM_001081407	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0.000000	0.512438	
mm_79660.1	chr9	59657013	59657213	+	1	NA	NA	NA	745	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.080000	0.616915	
mm_10326.1	chr2	11339381	11339581	+	1	NA	NA	NA	-8	NR_040369	100503147	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	OTTMUSG00000011311	predicted gene 13293	ncRNA	0.030000	0.527363	
mm_115372.1	chr13	113037512	113037712	+	1	NA	NA	NA	78	NR_029961	723868		NR_029961	ENSMUSG00000065575	Mir449a	Mirn449|Mirn449a|mir-449a|mmu-mir-449	microRNA 449a	ncRNA	0.015000	0.477612	
mm_45198.1	chr5	52550795	52550995	-	1	NA	NA	NA	15411	NM_001310604	246316	Mm.44721	NM_144945	ENSMUSG00000039252	Lgi2	mKIAA1916	leucine-rich repeat LGI family, member 2	protein-coding	0.025000	0.407960	
mm_75373.1	chr8	45333006	45333206	-	1	NA	NA	NA	90	NM_133969	102294	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0.050000	0.616915	
mm_14058.1	chr2	122631111	122631311	+	1	NA	NA	NA	586	NM_001033256	214616	Mm.271306	NM_001033256		Spata5l1	AV141009|C130039A10Rik	spermatogenesis associated 5-like 1	protein-coding	0.095000	0.711443	
mm_87167.1	chr10	37135932	37136132	+	1	NA	NA	NA	2894	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.025000	0.407960	
mm_6966.1	chr1	86154503	86154703	-	1	NA	NA	NA	-177	NM_030184	78795	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.060000	0.507463	
mm_109941.1	chr12	11326188	11326388	-	1	NA	NA	NA	26401	NR_106136	102465775		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.010000	0.482587	
mm_119399.1	chr14	41172224	41172424	+	1	NA	NA	NA	12874	NM_009160	20390	Mm.1321	NM_009160	ENSMUSG00000021795	Sftpd	AI573415|SP-D|Sfpd|Sftp4	surfactant associated protein D	protein-coding	0.005000	0.417910	
mm_129258.1	chr15	76722080	76722280	-	1	NA	NA	NA	-7	NM_198119	378937	Mm.289666	NM_198119	ENSMUSG00000033707	Lrrc24	6430402H13Rik	leucine rich repeat containing 24	protein-coding	0.100000	0.736318	
mm_91295.1	chr10	24915553	24915753	-	1	NA	NA	NA	4989	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.020000	0.502488	
mm_157697.1	chrX	60446595	60446795	-	1	NA	NA	NA	9500	NM_001039240	631784	Mm.424878	NM_001039240	ENSMUSG00000079583	Gm7073	-	predicted gene 7073	protein-coding	0.000000	0.402985	
mm_156991.1	chrX	7421004	7421204	-	1	NA	NA	NA	-57	NR_027925	68355	Mm.45111	NR_027924		2010204K13Rik	0610010M13Rik|Cip7	RIKEN cDNA 2010204K13 gene	ncRNA	0.015000	0.437811	
mm_132416.1	chr16	35068493	35068693	+	1	NA	NA	NA	46172	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.005000	0.388060	
mm_50087.1	chr6	41523850	41524050	+	1	NA	NA	NA	2174	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.517413	
mm_117782.1	chr13	97022302	97022502	-	1	NA	NA	NA	11960	NM_025585	66479	Mm.390629	NM_025585	ENSMUSG00000052075	1700029F12Rik	-	RIKEN cDNA 1700029F12 gene	protein-coding	0.015000	0.517413	
mm_106806.1	chr12	5808097	5808297	+	1	NA	NA	NA	431695	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	0.015000	0.507463	41(GGCCAGAAAAGC,-,0.00)
mm_135526.1	chr16	49255663	49255863	-	1	NA	NA	NA	198277	NM_001166210	667772	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0.030000	0.512438	
mm_15312.1	chr2	155567225	155567425	+	1	NA	NA	NA	-10395	NR_040613	74945	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	0.015000	0.527363	
mm_35459.1	chr4	40703109	40703309	-	1	NA	NA	NA	-15	NM_001025445	66408	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0.080000	0.547264	
mm_438.1	chr1	34697448	34697648	+	1	NA	NA	NA	-61338	NR_033627	241051	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	0.010000	0.512438	
mm_33306.1	chr4	129035561	129035761	+	1	NA	NA	NA	-22610	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.015000	0.552239	-35(CACTATAAAAGG,-,0.00)
mm_151573.1	chr19	60890278	60890478	+	1	NA	NA	NA	629	NM_018869	14773	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	0.065000	0.661692	
mm_8938.1	chr1	164437650	164437850	-	1	NA	NA	NA	20605	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.015000	0.398010	
mm_145443.1	chr18	59175336	59175536	+	1	NA	NA	NA	96	NM_001081328	78923	Mm.84007	NM_001081328	ENSMUSG00000058152	Chsy3	4833446K15Rik|AI662215	chondroitin sulfate synthase 3	protein-coding	0.130000	0.741294	
mm_172580.1	chr8	120719897	120720097	-	1	NA	NA	NA	-16361	NM_008320	15900	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.040000	0.557214	
mm_125890.1	chr15	75863662	75863862	+	1	NA	NA	NA	1423	NM_026960	69146	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	0.005000	0.402985	
mm_63406.1	chr7	127332258	127332458	+	1	NA	NA	NA	12956	NM_146202	233890	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0.005000	0.472637	
mm_123607.1	chr14	68087297	68087497	-	1	NA	NA	NA	3513	NM_010910	18039	Mm.1956	NM_010910	ENSMUSG00000022055	Nefl	AI847934|CMT2E|NF-L|NF68|Nfl	neurofilament, light polypeptide	protein-coding	0.000000	0.462687	
mm_29653.1	chr3	122391752	122391952	-	1	NA	NA	NA	-27928	NM_013867	29815	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0.020000	0.507463	
mm_112989.1	chr13	21495269	21495469	+	1	NA	NA	NA	11155	NR_026798	100038371	Mm.133328	NR_026798		Zfp389	ENSMUSG00000075041|OTTMUSG00000018077	zinc finger protein 389	pseudo	0.090000	0.606965	48(CTTCTTAAAGAC,+,0.00)
mm_100796.1	chr11	4941300	4941500	-	1	NA	NA	NA	-6121	NM_001243043	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.025000	0.497512	
mm_121345.1	chr14	116394896	116395096	+	1	NA	NA	NA	-530301	NM_001079844	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.010000	0.233831	
mm_157777.1	chrX	73786510	73786710	-	1	NA	NA	NA	287	NM_008323	15929	Mm.14825	NM_008323	ENSMUSG00000002010	Idh3g	-	isocitrate dehydrogenase 3 (NAD+), gamma	protein-coding	0.060000	0.597015	
mm_51095.1	chr6	67266904	67267104	+	1	NA	NA	NA	25	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.100000	0.681592	
mm_54512.1	chr6	35511506	35511706	-	1	NA	NA	NA	28282	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.010000	0.348259	
mm_103980.1	chr11	84825499	84825699	-	1	NA	NA	NA	3404	NM_177564	192970	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	0.005000	0.572139	
mm_6822.1	chr1	84194365	84194565	-	1	NA	NA	NA	24496	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.388060	59(GGATTTAAAAGC,-,0.00)
mm_162444.1	chr1	118590868	118591068	-	1	NA	NA	NA	-36977	NM_023755	81879	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.005000	0.442786	
mm_141311.1	chr17	28357352	28357552	-	1	NA	NA	NA	-6647	NM_011566	21678	Mm.6655	NM_011566	ENSMUSG00000002249	Tead3	DTEF-1|ETFR-1|TEAD-3|TEF-5|Tcf13r2	TEA domain family member 3	protein-coding	0.015000	0.472637	
mm_162839.1	chr10	84599429	84599629	+	1	NA	NA	NA	22582	NM_146008	216198	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	0.005000	0.383085	
mm_159462.1	chr3	158026596	158026796	-	1	NA	NA	NA	5058	NM_001093753	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.010000	0.457711	
mm_96430.1	chr11	67292328	67292528	+	1	NA	NA	NA	15304	NM_177369	17885	Mm.340163	NM_177369	ENSMUSG00000055775	Myh8	4832426G23Rik|AI327267|MHCp|MyHC-pn|Myhs-p|Myhsp	myosin, heavy polypeptide 8, skeletal muscle, perinatal	protein-coding	0.025000	0.507463	
mm_98562.1	chr11	95339909	95340109	+	1	NA	NA	NA	2991	NM_172543	215512	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0.030000	0.437811	
mm_50553.1	chr6	49047306	49047506	+	1	NA	NA	NA	10888	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.050000	0.507463	
mm_30906.1	chr4	32415480	32415680	+	1	NA	NA	NA	-1855	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.000000	0.303483	
mm_144838.1	chr18	36530940	36531140	+	1	NA	NA	NA	2888	NM_001271544	240215	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	0.055000	0.592040	
mm_140278.1	chr17	84962888	84963088	+	1	NA	NA	NA	4987	NM_001159496	19043	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.000000	0.323383	
mm_131051.1	chr16	4037025	4037225	+	1	NA	NA	NA	-20	NM_010061	13419	Mm.291048	NM_010061	ENSMUSG00000005980	Dnase1	AI788650|DNaseI|Dnl1	deoxyribonuclease I	protein-coding	0.010000	0.497512	-14(CCTTTAAAACTG,+,0.00)
mm_111201.1	chr12	84219011	84219211	-	1	NA	NA	NA	-230	NM_001163501	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.060000	0.601990	-4(CCTTTTAGACTC,+,0.00)
mm_33428.1	chr4	130054935	130055135	+	1	NA	NA	NA	7195	NM_028266	107581	Mm.41860	NM_028266	ENSMUSG00000040690	Col16a1	2700007F12Rik|A530052M23Rik|AI838662|CA1F	collagen, type XVI, alpha 1	protein-coding	0.005000	0.572139	
mm_119937.1	chr14	54976574	54976774	+	1	NA	NA	NA	-898	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.005000	0.388060	
mm_103897.1	chr11	83575233	83575433	-	1	NA	NA	NA	3303	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.005000	0.388060	
mm_129591.1	chr15	79790848	79791048	-	1	NA	NA	NA	13761	NM_030689	73340	Mm.38438	NM_030689	ENSMUSG00000022421	Nptxr	1200009K17Rik|1700036C17Rik|5730406O18Rik|AI452369|AI785356|D15Bwg0580e|NPR|Npcd	neuronal pentraxin receptor	protein-coding	0.020000	0.472637	-81(CCATTTAAAGTC,+,0.00)
mm_12010.1	chr2	57359661	57359861	+	1	NA	NA	NA	121379	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.005000	0.348259	
mm_163747.1	chr13	119755777	119755977	-	1	NA	NA	NA	5	NM_175538	245269	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0.075000	0.676617	
mm_138431.1	chr17	35089168	35089368	+	1	NA	NA	NA	-23	NM_178592	193742	Mm.43745	NM_178592	ENSMUSG00000007036	Abhd16a	AI326074|Bat-5|Bat5|D17H6S82E|NG26	abhydrolase domain containing 16A	protein-coding	0.125000	0.721393	
mm_119292.1	chr14	34673905	34674105	+	1	NA	NA	NA	77	NM_001301330	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.120000	0.731343	
mm_22868.1	chr3	28892518	28892718	+	1	NA	NA	NA	1	NM_001033479	385263	Mm.60893	NM_001033479	ENSMUSG00000074655	Gm1527	Gm1136	predicted gene 1527	protein-coding	0.005000	0.437811	
mm_42849.1	chr5	122209729	122209929	+	1	NA	NA	NA	100	NM_001042489	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.020000	0.582090	
mm_171206.1	chr3	56016531	56016731	-	1	NA	NA	NA	167070	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.015000	0.522388	
mm_129780.1	chr15	82794112	82794312	-	1	NA	NA	NA	33	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.005000	0.502488	-67(CTCTTTATAAGG,-,0.00),-65(CTTTATAAGGGA,+,0.00)
mm_9151.1	chr1	170925558	170925758	-	1	NA	NA	NA	1925	NM_001160215	98752	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0.015000	0.402985	
mm_115138.1	chr13	104672340	104672540	+	1	NA	NA	NA	144513	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.010000	0.402985	-26(GTGTTTATATGC,-,0.00)
mm_101023.1	chr11	8579082	8579282	-	1	NA	NA	NA	85353	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.015000	0.502488	
mm_61174.1	chr7	60003594	60003794	+	1	NA	NA	NA	1462	NM_013670	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding	0.015000	0.507463	
mm_144547.1	chr18	29442095	29442295	+	1	NA	NA	NA	-5	NR_045395	78199	Mm.243850	NR_045395		4930527G23Rik	-	RIKEN cDNA 4930527G23 gene	ncRNA	0.010000	0.378109	
mm_25144.1	chr3	102734413	102734613	+	1	NA	NA	NA	-257	NM_027533	70747	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	0.050000	0.601990	
mm_58242.1	chr6	145048489	145048689	-	1	NA	NA	NA	223	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.105000	0.696517	
mm_138758.1	chr17	37050541	37050741	+	1	NA	NA	NA	4675	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.080000	0.686567	
mm_15494.1	chr2	157793415	157793615	+	1	NA	NA	NA	56114	NM_025680	66642	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	0.010000	0.512438	
mm_120465.1	chr14	65971073	65971273	+	1	NA	NA	NA	2690	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.010000	0.547264	
mm_96816.1	chr11	69994361	69994561	+	1	NA	NA	NA	-1305	NM_001291125	78246	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.015000	0.457711	
mm_103952.1	chr11	84068672	84068872	-	1	NA	NA	NA	-415	NM_019819	56405	Mm.240885	NM_019819	ENSMUSG00000018648	Dusp14	1110014C10Rik|2310042C07Rik|D11Ertd395e|MKP-L|Mkp6	dual specificity phosphatase 14	protein-coding	0.020000	0.517413	
mm_141223.1	chr17	27323088	27323288	-	1	NA	NA	NA	-5197	NR_106075	102466818		NR_106075	ENSMUSG00000099237	Mir7216	Gm27555|mmu-mir-7216	microRNA 7216	ncRNA	0.015000	0.472637	
mm_68340.1	chr7	106506185	106506385	-	1	NA	NA	NA	-65212	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.338308	
mm_36755.1	chr4	101265145	101265345	-	1	NA	NA	NA	37	NM_146145	16451	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.135000	0.701493	-10(GTTTTTAGAGCG,+,0.00)
mm_159446.1	chr3	133091924	133092124	-	1	NA	NA	NA	169	NM_027927	71793	Mm.246726	NM_027927	ENSMUSG00000028016	Ints12	1110020M19Rik|2810027J24Rik|4930529N21Rik|A230056J18Rik|AI666778|Phf22|int12	integrator complex subunit 12	protein-coding	0.110000	0.706468	
mm_43935.1	chr5	145104517	145104717	+	1	NA	NA	NA	-9639	NM_023142	11867	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.030000	0.577114	
mm_137263.1	chr17	24665889	24666089	+	1	NA	NA	NA	-3763	NM_183149	213753	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	0.030000	0.472637	
mm_153738.1	chr19	44555318	44555518	-	1	NA	NA	NA	-3	NM_026061	67264	Mm.2060	NM_026061	ENSMUSG00000025204	Ndufb8	2900010I05Rik|AI987932	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8	protein-coding	0.095000	0.676617	
mm_117253.1	chr13	64366526	64366726	-	1	NA	NA	NA	3894	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.025000	0.477612	
mm_25591.1	chr3	116890787	116890987	+	1	NA	NA	NA	29207	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.015000	0.398010	
mm_122573.1	chr14	50807648	50807848	-	1	NA	NA	NA	23	NR_002142	85029		NR_002142	ENSMUSG00000092837	Rpph1	Gm24821|H1RNA|Rmrp5|Rpr	ribonuclease P RNA component H1	ncRNA	0.070000	0.597015	
mm_126481.1	chr15	81586128	81586328	+	1	NA	NA	NA	14	NM_177821	328572	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.085000	0.696517	
mm_74331.1	chr8	127063569	127063769	+	1	NA	NA	NA	-387	NM_033620	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.060000	0.572139	49(GGCTCTAAAGGC,-,0.00)
mm_161259.1	chr13	119374565	119374765	-	1	NA	NA	NA	34346	NM_008710	18115	Mm.132584	NM_008710	ENSMUSG00000025453	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.025000	0.447761	
mm_77058.1	chr8	109608319	109608519	-	1	NA	NA	NA	254	NM_020046	56749	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	0.070000	0.636816	
mm_47648.1	chr5	125389885	125390085	-	1	NA	NA	NA	32	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.100000	0.641791	
mm_79950.1	chr9	66060134	66060334	+	1	NA	NA	NA	65	NM_011149	19035	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	0.145000	0.731343	
mm_75684.1	chr8	68121245	68121445	-	1	NA	NA	NA	-146771	NM_177698	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.040000	0.606965	
mm_18695.1	chr2	71546256	71546456	-	1	NA	NA	NA	398	NM_010054	13392	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0.075000	0.671642	
mm_145056.1	chr18	40305974	40306174	+	1	NA	NA	NA	47713	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.020000	0.552239	
mm_101916.1	chr11	50139635	50139835	-	1	NA	NA	NA	8375	NM_029745	76795	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.020000	0.552239	
mm_152386.1	chr19	10457475	10457675	-	1	NA	NA	NA	-128	NM_001111140	278795	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0.120000	0.746269	
mm_95914.1	chr11	58220085	58220285	+	1	NA	NA	NA	5208	NM_019440	54396	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	0.020000	0.452736	
mm_7782.1	chr1	131278662	131278862	-	1	NA	NA	NA	801	NM_019777	56489	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.015000	0.562189	
mm_114539.1	chr13	73732977	73733177	+	1	NA	NA	NA	-30620	NM_011390	20499	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.110000	0.721393	
mm_91209.1	chr10	21161525	21161725	-	1	NA	NA	NA	-641	NM_010848	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.035000	0.557214	
mm_94093.1	chr10	128525771	128525971	-	1	NA	NA	NA	-12	NM_011843	23943	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0.055000	0.706468	
mm_13558.1	chr2	112265503	112265703	+	1	NA	NA	NA	-711	NM_133649	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.120000	0.701493	
mm_148479.1	chr19	4113299	4113499	+	1	NA	NA	NA	8176	NM_001276284	11632	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.020000	0.611940	
mm_147031.1	chr18	34720190	34720390	-	1	NA	NA	NA	97	NM_010280	14587	Mm.16520	NM_010280	ENSMUSG00000024366	Gfra3	GFRalpha3|Y15110	glial cell line derived neurotrophic factor family receptor alpha 3	protein-coding	0.110000	0.751244	
mm_65400.1	chr7	25205350	25205550	-	1	NA	NA	NA	12275	NR_106015	102466794		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	0.030000	0.552239	
mm_64061.1	chr7	140856354	140856554	+	1	NA	NA	NA	-71	NM_018742	54399	Mm.155696	NM_018742	ENSMUSG00000025484	Bet1l	2610021K23Rik|Gs15	Bet1 golgi vesicular membrane trafficking protein like	protein-coding	0.045000	0.537313	
mm_69941.1	chr7	142120693	142120893	-	1	NA	NA	NA	107	NM_001347558	108167466	Mm.365101	NM_001347558	ENSMUSG00000109859	Gm45618	-	predicted gene 45618	protein-coding	0.005000	0.562189	-33(GGATATAAAGGC,-,0.00)
mm_118306.1	chr13	113101054	113101254	-	1	NA	NA	NA	-173	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.015000	0.487562	
mm_59927.1	chr7	30423267	30423467	+	1	NA	NA	NA	63	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.045000	0.562189	
mm_154707.1	chrX	8276491	8276691	+	1	NA	NA	NA	5210	NM_172479	209837	Mm.6055	NM_172479	ENSMUSG00000031170	Slc38a5	C81234|E330031E14|JM24|SN2	solute carrier family 38, member 5	protein-coding	0.015000	0.532338	
mm_118992.1	chr14	28505512	28505712	+	1	NA	NA	NA	139	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.025000	0.502488	
mm_101289.1	chr11	22001518	22001718	-	1	NA	NA	NA	33	NM_011023	18423	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.050000	0.522388	
mm_78478.1	chr9	32695617	32695817	+	1	NA	NA	NA	-325	NM_011808	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.060000	0.587065	
mm_15440.1	chr2	157317907	157318107	+	1	NA	NA	NA	19419	NM_001329683	14601	Mm.389327	NM_010285	ENSMUSG00000027643	Ghrh	GRF|Ghrf	growth hormone releasing hormone	protein-coding	0.035000	0.562189	
mm_117921.1	chr13	99433436	99433636	-	1	NA	NA	NA	-20710	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.040000	0.547264	
mm_160134.1	chr7	30649531	30649731	-	1	NA	NA	NA	597	NM_133693	68035	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	0.045000	0.572139	
mm_135645.1	chr16	52372600	52372800	-	1	NA	NA	NA	80381	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.437811	
mm_143579.1	chr17	74316310	74316510	-	1	NA	NA	NA	-16	NM_001146222	66310	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0.130000	0.706468	
mm_9695.1	chr1	178337584	178337784	-	1	NA	NA	NA	100	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.135000	0.716418	
mm_68096.1	chr7	101933813	101934013	-	1	NA	NA	NA	-56	NM_001162973	69358	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0.065000	0.552239	
mm_21570.1	chr2	164236905	164237105	-	1	NA	NA	NA	1336	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.035000	0.393035	22(TCCTATAAAGGA,-,0.00)
mm_10389.1	chr2	12938581	12938781	+	1	NA	NA	NA	14640	NM_001305437	19212	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0.005000	0.422886	
mm_57954.1	chr6	135168015	135168215	-	1	NA	NA	NA	100	NM_013546	15199	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	0.080000	0.636816	
mm_130849.1	chr15	101940162	101940362	-	1	NA	NA	NA	62	NM_146063	223917	Mm.162744	NM_146063	ENSMUSG00000061397	Krt79	BC031593	keratin 79	protein-coding	0.015000	0.552239	
mm_16641.1	chr2	6081060	6081260	-	1	NA	NA	NA	49025	NM_144883	227545	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0.020000	0.577114	
mm_37577.1	chr4	126300988	126301188	-	1	NA	NA	NA	14294	NM_199473	329941	Mm.296327	NM_199473	ENSMUSG00000056174	Col8a2	AI429819	collagen, type VIII, alpha 2	protein-coding	0.095000	0.716418	
mm_12211.1	chr2	67173805	67174005	+	1	NA	NA	NA	71	NM_001033477	383709	Mm.244520	NM_001033477		Gm1322	-	predicted gene 1322	protein-coding	0.015000	0.412935	
mm_100943.1	chr11	6528409	6528609	-	1	NA	NA	NA	251	NR_045893	100041286	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974|OTTMUSG00000005115	small nucleolar RNA host gene 15	ncRNA	0.045000	0.557214	
mm_12375.1	chr2	69822645	69822845	+	1	NA	NA	NA	375	NM_177784	277396	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	0.135000	0.766169	
mm_64136.1	chr7	141194070	141194270	+	1	NA	NA	NA	40	NM_001172064	70552	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	0.070000	0.616915	
mm_170198.1	chr17	6662917	6663117	+	1	NA	NA	NA	-7078	NM_001166627	100040531	Mm.457987	NM_001166627	ENSMUSG00000095677	Dynlt1f	100040631|Dynlt1e	dynein light chain Tctex-type 1F	protein-coding	0.010000	0.606965	
mm_59968.1	chr7	30428378	30428578	+	1	NA	NA	NA	5174	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.015000	0.497512	
mm_21736.1	chr2	164777713	164777913	-	1	NA	NA	NA	1921	NM_009394	21925	Mm.1716	NM_009394	ENSMUSG00000017300	Tnnc2	Tncs	troponin C2, fast	protein-coding	0.045000	0.587065	
mm_171439.1	chr4	141207756	141207956	-	1	NA	NA	NA	-6100	NM_001081174	76166	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723	REM2 and RAB-like small GTPase 1	protein-coding	0.090000	0.611940	-34(CTCCTTAAAGGG,-,0.00),-32(CCTTAAAGGGGA,+,0.00)
mm_40335.1	chr5	43911072	43911272	+	1	NA	NA	NA	42363	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.010000	0.313433	
mm_35766.1	chr4	46184215	46184415	-	1	NA	NA	NA	11996	NM_011728	22590	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	0.040000	0.527363	
mm_35415.1	chr4	34952360	34952560	-	1	NA	NA	NA	-40979	NR_040652	73696	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0.035000	0.477612	
mm_106956.1	chr12	8807706	8807906	+	1	NA	NA	NA	36410	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.010000	0.502488	
mm_8808.1	chr1	161876653	161876853	-	1	NA	NA	NA	-92	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.135000	0.746269	
mm_907.1	chr1	54250586	54250786	+	1	NA	NA	NA	3	NM_030025	78016	Mm.67455	NM_030025	ENSMUSG00000025983	Ccdc150	4930511H11Rik	coiled-coil domain containing 150	protein-coding	0.075000	0.641791	
mm_99939.1	chr11	111027151	111027351	+	1	NA	NA	NA	3391	NM_001252208	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.005000	0.343284	
mm_15184.1	chr2	154200214	154200414	+	1	NA	NA	NA	-66	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.000000	0.557214	
mm_151672.1	chr19	4190907	4191107	-	1	NA	NA	NA	40	NM_178650	108995	Mm.288312	NM_178650	ENSMUSG00000040247	Tbc1d10c	1810062O14Rik|AI428527	TBC1 domain family, member 10c	protein-coding	0.010000	0.646766	
mm_17046.1	chr2	20943319	20943519	-	1	NA	NA	NA	24302	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.020000	0.572139	
mm_42880.1	chr5	122354258	122354458	+	1	NA	NA	NA	-11	NM_001347453	56433	Mm.216528	NM_019780	ENSMUSG00000029462	Vps29	2010015D08Rik|AW049835|PEP11	VPS29 retromer complex component	protein-coding	0.095000	0.592040	
mm_83850.1	chr9	54501739	54501939	-	1	NA	NA	NA	-213	NM_172771	235380	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.210000	0.781095	
mm_101838.1	chr11	48753116	48753316	-	1	NA	NA	NA	-47144	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.010000	0.487562	
mm_152106.1	chr19	6933176	6933376	-	1	NA	NA	NA	1239	NM_008431	16528	Mm.12894	NM_008431	ENSMUSG00000024957	Kcnk4	MLZ-622|TRAAK|TRAAKt|Tex40	potassium channel, subfamily K, member 4	protein-coding	0.005000	0.532338	
mm_30484.1	chr3	155030235	155030435	-	1	NA	NA	NA	25072	NM_177066	435766	Mm.210428	NM_177066	ENSMUSG00000040086	Tnni3k	Cark|D830019J24Rik	TNNI3 interacting kinase	protein-coding	0.025000	0.517413	
mm_7308.1	chr1	98047622	98047822	-	1	NA	NA	NA	71	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA	0.010000	0.402985	
mm_102433.1	chr11	59506197	59506397	-	1	NA	NA	NA	343	NM_001291014	268417	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0.105000	0.736318	
mm_99261.1	chr11	101245953	101246153	+	1	NA	NA	NA	-281	NM_019444	54409	Mm.260698	NM_019444	ENSMUSG00000001240	Ramp2	-	receptor (calcitonin) activity modifying protein 2	protein-coding	0.050000	0.626866	
mm_89120.1	chr10	84838019	84838219	+	1	NA	NA	NA	-29	NM_027689	71137	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.020000	0.512438	
mm_154651.1	chrX	7841268	7841468	+	1	NA	NA	NA	-463	NM_001290536	54644	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	0.030000	0.512438	
mm_156561.1	chrX	151803302	151803502	+	1	NA	NA	NA	120	NM_021523	59026	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	0.110000	0.666667	
mm_127502.1	chr15	101427599	101427799	+	1	NA	NA	NA	11105	NM_001003668	406219	Mm.347934	NM_001003668	ENSMUSG00000047641	Krt87	K83|K87|Krt2-25|Krt83	keratin 87	protein-coding	0.015000	0.542289	68(GCTTTAATAAAG,+,0.00)
mm_149542.1	chr19	12564433	12564633	+	1	NA	NA	NA	-8977	NM_001346545	107373	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	0.000000	0.402985	
mm_18391.1	chr2	60209603	60209803	-	1	NA	NA	NA	-233	NM_020575	57438	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.190000	0.815920	
mm_39962.1	chr5	32136649	32136849	+	1	NA	NA	NA	277	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.105000	0.696517	
mm_99460.1	chr11	102435148	102435348	+	1	NA	NA	NA	4926	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.020000	0.547264	
mm_56317.1	chr6	92242798	92242998	-	1	NA	NA	NA	1752	NM_009426	22044	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	0.030000	0.587065	
mm_18669.1	chr2	70825600	70825800	-	1	NA	NA	NA	-220	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.175000	0.786070	
mm_107519.1	chr12	40450943	40451143	+	1	NA	NA	NA	4990	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.015000	0.343284	7(CGGCTTAAAGGC,-,0.00)
mm_37198.1	chr4	117765460	117765660	-	1	NA	NA	NA	106	NM_029416	75753	Mm.3848	NM_029416	ENSMUSG00000048626	Klf17	7420700M05Rik|AA420409|AU043468|C85123|D4Ertd561e|Gzf|Zfp393	Kruppel-like factor 17	protein-coding	0.040000	0.577114	
mm_127982.1	chr15	12493411	12493611	-	1	NA	NA	NA	99045	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.010000	0.492537	
mm_8747.1	chr1	160307213	160307413	-	1	NA	NA	NA	-11341	NR_035448	100316784		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	0.010000	0.537313	
mm_168780.1	chr12	17956597	17956797	+	1	NA	NA	NA	265883	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.025000	0.487562	
mm_161608.1	chr16	44820708	44820908	+	1	NA	NA	NA	80	NM_207244	239849	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0.010000	0.452736	
mm_173121.1	chrX	162909122	162909322	-	1	NA	NA	NA	7051	NR_033143	55936	Mm.2065	NM_018737	ENSMUSG00000031360	Ctps2	A830031M15Rik|AI326475|Ctpsh	cytidine 5'-triphosphate synthase 2	protein-coding	0.000000	0.402985	
mm_27497.1	chr3	55054903	55055103	-	1	NA	NA	NA	52	NM_007628	12427	Mm.4815	NM_007628	ENSMUSG00000027793	Ccna1	-	cyclin A1	protein-coding	0.065000	0.676617	
mm_168621.1	chr1	178336878	178337078	-	1	NA	NA	NA	806	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.100000	0.726368	
mm_106861.1	chr12	8009208	8009408	+	1	NA	NA	NA	31631	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.417910	-82(GAGTATAAAAGT,-,0.00),39(GTCTTTATAGTC,+,0.00)
mm_119726.1	chr14	54059185	54059385	+	1	NA	NA	NA	194644	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.557214	
mm_168243.1	chr10	81863852	81864052	+	1	NA	NA	NA	18	NM_001243067	73610	Mm.490466	NM_001243067	ENSMUSG00000096795	Zfp433	1700123A16Rik	zinc finger protein 433	protein-coding	0.085000	0.661692	
mm_78578.1	chr9	36832678	36832878	+	1	NA	NA	NA	-10881	NM_183171	235180	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	0.120000	0.736318	
mm_38587.1	chr4	141821625	141821825	-	1	NA	NA	NA	4280	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.030000	0.592040	
mm_137307.1	chr17	24877755	24877955	+	1	NA	NA	NA	-915	NM_008340	16005	Mm.3135	NM_008340	ENSMUSG00000046070	Igfals	ALS|Albs|mKIAA4111	insulin-like growth factor binding protein, acid labile subunit	protein-coding	0.020000	0.641791	
mm_64857.1	chr7	13036543	13036743	-	1	NA	NA	NA	984	NM_001243968	22192	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0.020000	0.487562	
mm_21035.1	chr2	152490088	152490288	-	1	NA	NA	NA	-50	NM_001002791	442835	Mm.99065	NM_001002791	ENSMUSG00000027468	Defb22	9230002F21Rik	defensin beta 22	protein-coding	0.000000	0.492537	
mm_54612.1	chr6	38354136	38354336	-	1	NA	NA	NA	367	NM_028864	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.120000	0.666667	
mm_58190.1	chr6	143057812	143058012	-	1	NA	NA	NA	42240	NM_001286578	74741	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.000000	0.432836	-34(TTTTATAAAAGG,-,0.00)
mm_125515.1	chr15	57694009	57694209	+	1	NA	NA	NA	-558	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.055000	0.477612	
mm_84755.1	chr9	75567238	75567438	-	1	NA	NA	NA	-7681	NM_016963	50875	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0.000000	0.437811	
mm_116794.1	chr13	53472705	53472905	-	1	NA	NA	NA	-25	NM_013601	17702	Mm.1763	NM_013601	ENSMUSG00000021469	Msx2	BB122635|Hox-8|Hox8|Hox8.1	msh homeobox 2	protein-coding	0.105000	0.681592	
mm_154381.1	chrM	11230	11430	+	1	NA	NA	NA	NA	NA									0.010000	0.323383	
mm_53391.1	chr6	129578113	129578313	+	1	NA	NA	NA	-73	NM_153590	243655	Mm.30968	NM_153590	ENSMUSG00000050241	Klre1	Klre-1|NKG2I	killer cell lectin-like receptor family E member 1	protein-coding	0.005000	0.452736	
mm_26191.1	chr3	138451362	138451562	+	1	NA	NA	NA	8369	NM_007410	11532	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	0.025000	0.462687	
mm_107088.1	chr12	17372839	17373039	+	1	NA	NA	NA	17547	NR_037226	100526470		NR_037226	ENSMUSG00000093037	Mir3066	mir-3066|mmu-mir-3066	microRNA 3066	ncRNA	0.010000	0.447761	
mm_45944.1	chr5	90260069	90260269	-	1	NA	NA	NA	-36173	NM_001163456	231430	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	0.010000	0.402985	-19(GCTTTTAGGGTC,+,0.00)
mm_88033.1	chr10	67285444	67285644	+	1	NA	NA	NA	-263	NM_001036293	641340	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.055000	0.512438	
mm_149829.1	chr19	24521337	24521537	+	1	NA	NA	NA	34390	NM_008846	18719	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	0.020000	0.442786	
mm_91654.1	chr10	42583510	42583710	-	1	NA	NA	NA	-22	NM_152229	21907	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	0.080000	0.641791	
mm_14832.1	chr2	147364859	147365059	+	1	NA	NA	NA	-35	NM_008780	18503	Mm.315502	NM_008780	ENSMUSG00000037034	Pax1	Pax-1|hbs|hunchback|un|undulated|wt	paired box 1	protein-coding	0.060000	0.567164	
mm_140691.1	chr17	13760278	13760478	-	1	NA	NA	NA	-163	NM_010806	17356	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.190000	0.791045	
mm_92432.1	chr10	77154233	77154433	-	1	NA	NA	NA	12197	NM_009929	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.000000	0.432836	
mm_139601.1	chr17	57279076	57279276	+	1	NA	NA	NA	76	NM_001163815	22324	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.050000	0.661692	
mm_6755.1	chr1	84037375	84037575	-	1	NA	NA	NA	181486	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.030000	0.452736	
mm_2091.1	chr1	87701059	87701259	+	1	NA	NA	NA	-54852	NM_029846	77040	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.025000	0.522388	
mm_165055.1	chr19	41339409	41339609	+	1	NA	NA	NA	45561	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.030000	0.597015	
mm_51399.1	chr6	78371757	78371957	+	1	NA	NA	NA	972	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.020000	0.517413	
mm_89008.1	chr10	81628486	81628686	+	1	NA	NA	NA	46	NM_027480	70615	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0.040000	0.651741	
mm_157613.1	chrX	53776297	53776497	-	1	NA	NA	NA	-3	NM_001009549	333473	Mm.327378	NM_001009549	ENSMUSG00000059334	Zfp36l3	AY661338	zinc finger protein 36, C3H type-like 3	protein-coding	0.030000	0.572139	
mm_26254.1	chr3	142496698	142496898	+	1	NA	NA	NA	-136	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.010000	0.422886	
mm_66067.1	chr7	30823670	30823870	-	1	NA	NA	NA	5	NM_146187	233079	Mm.97338	NM_146187	ENSMUSG00000051314	Ffar2	GPCR43|Gpr43	free fatty acid receptor 2	protein-coding	0.060000	0.562189	
mm_28126.1	chr3	86999170	86999370	-	1	NA	NA	NA	70	NM_007639	12479	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0.050000	0.567164	
mm_134060.1	chr16	7951571	7951771	-	1	NA	NA	NA	473465	NM_029070	74720	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding	0.005000	0.452736	
mm_99994.1	chr11	114765350	114765550	+	1	NA	NA	NA	61	NM_001102615	286942	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	0.080000	0.631841	
mm_160796.1	chr11	4440986	4441186	-	1	NA	NA	NA	-4	NM_029458	75828	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0.065000	0.616915	
mm_165647.1	chr3	82903857	82904057	-	1	NA	NA	NA	17	NM_023624	79235	Mm.33921	NM_023624	ENSMUSG00000028003	Lrat	1300010A18Rik|AI449251	lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)	protein-coding	0.060000	0.631841	-51(ACCTCTATAAGA,-,0.00),-49(CTCTATAAGAGC,-,0.00)
mm_161323.1	chr14	47663648	47663848	+	1	NA	NA	NA	-8	NM_008477	16709	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	0.020000	0.398010	
mm_71796.1	chr8	67685418	67685618	+	1	NA	NA	NA	132777	NM_027626	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.000000	0.502488	-34(CACCATAAAAGT,-,0.00)
mm_161524.1	chr15	100586855	100587055	-	1	NA	NA	NA	-590	NM_010127	19009	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0.020000	0.462687	
mm_24112.1	chr3	88143299	88143499	+	1	NA	NA	NA	1027	NM_001310593	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.045000	0.621891	
mm_168667.1	chr11	9118701	9118901	+	1	NA	NA	NA	294	NM_001159402	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.045000	0.587065	-100(GCCTATATAGGT,+,0.00),-100(GCCTATATAGGT,-,0.00)
mm_80807.1	chr9	96363831	96364031	+	1	NA	NA	NA	368	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.185000	0.830846	
mm_14640.1	chr2	136809247	136809447	+	1	NA	NA	NA	-81871	NM_028201	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.005000	0.398010	
mm_122003.1	chr14	26917022	26917222	-	1	NA	NA	NA	22518	NM_080856	142687	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	0.010000	0.393035	
mm_66031.1	chr7	30626025	30626225	-	1	NA	NA	NA	26	NM_025628	110323	Mm.400	NM_025628	ENSMUSG00000036751	Cox6b1	2010000G05Rik|Cox6b	cytochrome c oxidase, subunit VIb polypeptide 1	protein-coding	0.075000	0.597015	
mm_4765.1	chr1	182458551	182458751	+	1	NA	NA	NA	49484	NM_173378	209456	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.035000	0.472637	-87(TCATTTATGGTC,+,0.00)
mm_154966.1	chrX	37126669	37126869	+	1	NA	NA	NA	6	NM_025937	67050	Mm.55422	NM_025937	ENSMUSG00000016409	Nkap	2610020O08Rik|AA987160|AI849147|AL024236	NFKB activating protein	protein-coding	0.035000	0.497512	
mm_6986.1	chr1	86357102	86357302	-	1	NA	NA	NA	-875	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.020000	0.467662	
mm_167532.1	chr9	21291260	21291460	-	1	NA	NA	NA	-151	NM_009878	12581	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	protein-coding	0.065000	0.626866	
mm_97839.1	chr11	83065080	83065280	+	1	NA	NA	NA	68	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.010000	0.512438	-68(GCTTTAATGCAG,+,0.00)
mm_9077.1	chr1	168431453	168431653	-	1	NA	NA	NA	616	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.060000	0.562189	
mm_80763.1	chr9	95559258	95559458	+	1	NA	NA	NA	-459	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.110000	0.711443	
mm_140393.1	chr17	87447132	87447332	+	1	NA	NA	NA	-297	NM_007589	12314	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017	calmodulin 2	protein-coding	0.115000	0.646766	
mm_170169.1	chr17	55878841	55879041	-	1	NA	NA	NA	12	NM_144546	104349	Mm.460659	NM_144546	ENSMUSG00000057835	Zfp119a	AL024077|Mzf13|Zfp119	zinc finger protein 119a	protein-coding	0.080000	0.641791	
mm_77993.1	chr9	8544416	8544616	+	1	NA	NA	NA	374	NM_001282087	22068	Mm.325086	NM_013838	ENSMUSG00000031997	Trpc6	AV025995|LLHWJM002|LLHWJM003|LLHWJM004|TRP-6|Trrp6|mtrp6	transient receptor potential cation channel, subfamily C, member 6	protein-coding	0.075000	0.661692	-46(CTCTCTAAAGGC,-,0.00)
mm_142356.1	chr17	43649591	43649791	-	1	NA	NA	NA	17324	NM_028711	74011	Mm.288697	NM_028711	ENSMUSG00000023912	Slc25a27	3632410G24Rik|9430092A03Rik|D530043E16Rik|Ucp4	solute carrier family 25, member 27	protein-coding	0.030000	0.447761	
mm_80559.1	chr9	83548222	83548422	+	1	NA	NA	NA	-16	NM_172507	212531	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.130000	0.696517	
mm_67740.1	chr7	90265323	90265523	-	1	NA	NA	NA	9	NM_029256	75338	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.050000	0.577114	
mm_122304.1	chr14	34674991	34675191	-	1	NA	NA	NA	1163	NM_001301330	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.025000	0.373134	
mm_81294.1	chr9	108337366	108337566	+	1	NA	NA	NA	-1614	NM_008160	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.000000	0.258706	
mm_37548.1	chr4	125127730	125127930	-	1	NA	NA	NA	51	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.115000	0.701493	-40(TGCCCTTAAAGC,-,0.00),-38(CCCTTAAAGCAC,+,0.00)
mm_35577.1	chr4	41740752	41740952	-	1	NA	NA	NA	507	NM_001286540	18391	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0.085000	0.651741	
mm_43052.1	chr5	124116005	124116205	+	1	NA	NA	NA	-3	NM_144509	65105	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	0.090000	0.621891	
mm_6751.1	chr1	83408179	83408379	-	1	NA	NA	NA	-79	NM_172430	77629	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	0.025000	0.592040	
mm_157970.1	chrX	93632050	93632250	-	1	NA	NA	NA	5	NM_008892	18968	Mm.1923	NM_008892	ENSMUSG00000006678	Pola1	AW321876|Pola	polymerase (DNA directed), alpha 1	protein-coding	0.085000	0.621891	
mm_101752.1	chr11	43383359	43383559	-	1	NA	NA	NA	-8998	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.005000	0.278607	
mm_80985.1	chr9	103222924	103223124	+	1	NA	NA	NA	7262	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.025000	0.502488	
mm_90074.1	chr10	116387372	116387572	+	1	NA	NA	NA	-30649	NR_028107	67342	Mm.245800	NM_026098	ENSMUSG00000020164	Kcnmb4os1	1700058G18Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1	ncRNA	0.035000	0.512438	
mm_63461.1	chr7	127573257	127573457	+	1	NA	NA	NA	9	NM_026888	68961	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	0.035000	0.537313	
mm_78874.1	chr9	44482699	44482899	+	1	NA	NA	NA	-16337	NM_030256	80288	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.080000	0.686567	
mm_147507.1	chr18	50224601	50224801	-	1	NA	NA	NA	-53668	NM_001004061	225497	Mm.329435	NM_001004061	ENSMUSG00000035420	Fam170a	Gm93|Znfd	family with sequence similarity 170, member A	protein-coding	0.000000	0.333333	
mm_119343.1	chr14	41096854	41097054	+	1	NA	NA	NA	-8079	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.000000	0.283582	
mm_6438.1	chr1	73998294	73998494	-	1	NA	NA	NA	126053	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.010000	0.577114	
mm_18504.1	chr2	62611673	62611873	-	1	NA	NA	NA	34482	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.025000	0.388060	
mm_75667.1	chr8	67515474	67515674	-	1	NA	NA	NA	-8280	NM_008674	17962	Mm.57193	NM_008674	ENSMUSG00000056426	Nat3	-	N-acetyltransferase 3	protein-coding	0.100000	0.656716	
mm_136136.1	chr16	87049160	87049360	-	1	NA	NA	NA	-304925	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0.030000	0.437811	
mm_30972.1	chr4	34550525	34550725	+	1	NA	NA	NA	10	NM_001007589	433693	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.100000	0.651741	
mm_151101.1	chr19	47857771	47857971	+	1	NA	NA	NA	2898	NM_010362	14873	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0.035000	0.507463	
mm_27551.1	chr3	58153191	58153391	-	1	NA	NA	NA	10516	NR_040538	67850	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	0.010000	0.557214	
mm_68703.1	chr7	119642360	119642560	-	1	NA	NA	NA	24632	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.010000	0.462687	52(TGCTCTTAAAAG,-,0.00),53(GCTCTTAAAAGC,-,0.00)
mm_61471.1	chr7	75612171	75612371	+	1	NA	NA	NA	156737	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.030000	0.517413	
mm_51686.1	chr6	86525240	86525440	+	1	NA	NA	NA	825	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.080000	0.651741	
mm_156467.1	chrX	143518468	143518668	+	1	NA	NA	NA	-23	NM_001195048	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding	0.045000	0.621891	
mm_148410.1	chr19	3912950	3913150	+	1	NA	NA	NA	-276	NM_001271444	225887	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0.065000	0.572139	
mm_142778.1	chr17	50101084	50101284	-	1	NA	NA	NA	89313	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.010000	0.343284	
mm_11303.1	chr2	30237569	30237769	+	1	NA	NA	NA	-38	NR_028299	67350	Mm.402683	NR_028299		1700084E18Rik	-	RIKEN cDNA 1700084E18 gene	ncRNA	0.105000	0.701493	
mm_146201.1	chr18	76268120	76268320	+	1	NA	NA	NA	5775	NM_001311070	17126	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0.005000	0.417910	-20(GTCTTTAGAGGG,+,0.00),83(CTTTTTATACTT,+,0.00)
mm_133984.1	chr16	4559634	4559834	-	1	NA	NA	NA	-14	NM_031182	83383	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.055000	0.636816	
mm_6173.1	chr1	65082192	65082392	-	1	NA	NA	NA	-2	NM_144761	12965	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	0.015000	0.532338	
mm_121029.1	chr14	79704207	79704407	+	1	NA	NA	NA	1387	NR_045060	73989	Mm.107775	NR_045060		4930452G13Rik	-	RIKEN cDNA 4930452G13 gene	ncRNA	0.010000	0.502488	
mm_137205.1	chr17	23953196	23953396	+	1	NA	NA	NA	1977	NM_001077421	638345	Mm.46428	NM_001077421	ENSMUSG00000024125	Sbpl	2310068J22Rik	spermine binding protein-like	protein-coding	0.015000	0.447761	
mm_136210.1	chr16	89837779	89837979	-	1	NA	NA	NA	-19527	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.010000	0.432836	
mm_128813.1	chr15	67104859	67105059	-	1	NA	NA	NA	71923	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.015000	0.402985	-12(GGCTTTTAATGA,-,0.00)
mm_148726.1	chr19	5848409	5848609	+	1	NA	NA	NA	-3029	NR_003513	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.015000	0.507463	
mm_171176.1	chr3	34183134	34183334	+	1	NA	NA	NA	-101880	NM_026332	67713	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.010000	0.447761	
mm_170561.1	chr19	45649877	45650077	+	1	NA	NA	NA	10216	NM_013907	30838	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0.010000	0.407960	
mm_90238.1	chr10	121395162	121395362	+	1	NA	NA	NA	30172	NM_029364	75612	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.020000	0.542289	
mm_4421.1	chr1	172501121	172501321	+	1	NA	NA	NA	975	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.050000	0.611940	
mm_76601.1	chr8	90325832	90326032	-	1	NA	NA	NA	22320	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding	0.010000	0.452736	
mm_16967.1	chr2	17690081	17690281	-	1	NA	NA	NA	40887	NM_028757	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0.000000	0.427861	
mm_89390.1	chr10	89872888	89873088	+	1	NA	NA	NA	-521	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.170000	0.845771	
mm_19495.1	chr2	93452584	93452784	-	1	NA	NA	NA	-12	NM_001271462	12521	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.005000	0.527363	
mm_41263.1	chr5	89027966	89028166	+	1	NA	NA	NA	140806	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.010000	0.467662	
mm_9477.1	chr1	173367385	173367585	-	1	NA	NA	NA	210	NM_053199	94332	Mm.330524	NM_053199	ENSMUSG00000005338	Cadm3	BIgR|Igsf4b|Necl-1|Necl1|SynCAM3|Tsll1	cell adhesion molecule 3	protein-coding	0.085000	0.746269	
mm_37790.1	chr4	130359841	130360041	-	1	NA	NA	NA	2	NM_153160	619605	Mm.297196	NM_153160	ENSMUSG00000028772	Zcchc17	2810055E05Rik|HSPC251|LDC4|pNO40|pS1D	zinc finger, CCHC domain containing 17	protein-coding	0.100000	0.651741	
mm_158178.1	chrX	103980075	103980275	-	1	NA	NA	NA	1109	NM_011276	19820	Mm.427762	NM_011276	ENSMUSG00000056537	Rlim	AL022832|AW743871|Ha1r|Rlim1|Rnf12	ring finger protein, LIM domain interacting	protein-coding	0.040000	0.497512	
mm_44573.1	chr5	24829952	24830152	-	1	NA	NA	NA	12309	NM_053075	19744	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.000000	0.378109	
mm_102251.1	chr11	55147099	55147299	-	1	NA	NA	NA	4507	NM_172258	215332	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0.005000	0.452736	
mm_144740.1	chr18	35571383	35571583	+	1	NA	NA	NA	9325	NM_010771	17184	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0.010000	0.308458	
mm_89493.1	chr10	93833700	93833900	+	1	NA	NA	NA	2245	NM_001206851	327799	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.100000	0.711443	
mm_78590.1	chr9	37379759	37379959	+	1	NA	NA	NA	12253	NM_175189	72927	Mm.266133	NM_175189	ENSMUSG00000046240	Hepacam	2900042E01Rik|Glialcam|Hepn1	hepatocyte cell adhesion molecule	protein-coding	0.005000	0.427861	
mm_29720.1	chr3	124580987	124581187	-	1	NA	NA	NA	4	NR_015460	384775	Mm.489851	NR_015460	ENSMUSG00000039174	1700003H04Rik	4930538K10Rik|4933400D22Rik	RIKEN cDNA 1700003H04 gene	ncRNA	0.000000	0.437811	
mm_61230.1	chr7	64502067	64502267	+	1	NA	NA	NA	29	NM_001291167	11784	Mm.4657	NM_007461	ENSMUSG00000030519	Apba2	X11-like|X11L|XllL|mXllL	amyloid beta (A4) precursor protein-binding, family A, member 2	protein-coding	0.170000	0.766169	
mm_72015.1	chr8	70715656	70715856	+	1	NA	NA	NA	-2787	NM_001195253	100502950	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0.010000	0.567164	
mm_131185.1	chr16	7217598	7217798	+	1	NA	NA	NA	147863	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.015000	0.537313	
mm_118151.1	chr13	105242704	105242904	-	1	NA	NA	NA	50210	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.000000	0.437811	
mm_75165.1	chr8	36613774	36613974	-	1	NA	NA	NA	69	NM_015802	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.095000	0.701493	
mm_105759.1	chr11	109473673	109473873	-	1	NA	NA	NA	-177	NM_001029842	104681	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.095000	0.686567	
mm_28186.1	chr3	88058391	88058591	-	1	NA	NA	NA	4	NM_144897	246703	Mm.205996	NM_144897	ENSMUSG00000028070	Apoa1bp	AA087124|AI-BP|AIBP|Apoa1ip|ESTM37|Naxe	apolipoprotein A-I binding protein	protein-coding	0.100000	0.691542	
mm_4814.1	chr1	185363013	185363213	+	1	NA	NA	NA	18	NM_029735	107508	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	0.120000	0.681592	
mm_83636.1	chr9	49486120	49486320	-	1	NA	NA	NA	5	NM_172770	235330	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	0.065000	0.651741	
mm_125553.1	chr15	58823678	58823878	+	1	NA	NA	NA	-351	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.060000	0.626866	
mm_110782.1	chr12	71015488	71015688	-	1	NA	NA	NA	235	NR_045056	73204	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0.075000	0.616915	
mm_18004.1	chr2	38228116	38228316	-	1	NA	NA	NA	59168	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.000000	0.343284	
mm_154738.1	chrX	10252272	10252472	+	1	NA	NA	NA	67	NM_008769	18416	Mm.2611	NM_008769	ENSMUSG00000031173	Otc	AI265390|Sf|spf	ornithine transcarbamylase	protein-coding	0.000000	0.497512	
mm_146143.1	chr18	74779084	74779284	+	1	NA	NA	NA	-28	NM_177470	52538	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	0.065000	0.676617	
mm_74481.1	chr8	4324878	4325078	-	1	NA	NA	NA	122	NM_010485	15568	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	0.200000	0.791045	
mm_121651.1	chr14	10277908	10278108	-	1	NA	NA	NA	175450	NM_001308286	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.005000	0.353234	
mm_34338.1	chr4	143394313	143394513	+	1	NA	NA	NA	-28	NM_031377	83491	Mm.190607	NM_031377	ENSMUSG00000041805	Pramel1	-	preferentially expressed antigen in melanoma-like 1	protein-coding	0.090000	0.651741	
mm_122508.1	chr14	46901509	46901709	-	1	NA	NA	NA	18644	NM_001037221	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.020000	0.477612	
mm_51733.1	chr6	87069452	87069652	+	1	NA	NA	NA	26706	NM_013528	14583	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	0.005000	0.472637	
mm_2363.1	chr1	93006271	93006471	+	1	NA	NA	NA	37	NM_001159658	208760	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0.010000	0.537313	
mm_50314.1	chr6	47877483	47877683	+	1	NA	NA	NA	28	NM_146175	101095	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	0.085000	0.681592	
mm_93927.1	chr10	127165423	127165623	-	1	NA	NA	NA	-308	NM_027739	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.130000	0.741294	
mm_86889.1	chr10	22299503	22299703	+	1	NA	NA	NA	-7117	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.005000	0.378109	
mm_28886.1	chr3	97868098	97868298	-	1	NA	NA	NA	20509	NM_001289702	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.100000	0.671642	
mm_166628.1	chr6	78373334	78373534	+	1	NA	NA	NA	2549	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.000000	0.333333	
mm_50784.1	chr6	53978606	53978806	+	1	NA	NA	NA	15	NR_110484	320178	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	-	RIKEN cDNA 4921529L05 gene	ncRNA	0.020000	0.452736	
mm_106250.1	chr11	117819023	117819223	-	1	NA	NA	NA	-6796	NM_027827	71562	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	0.015000	0.537313	
mm_7037.1	chr1	87100486	87100686	-	1	NA	NA	NA	1020	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.030000	0.587065	
mm_24613.1	chr3	93447730	93447930	+	1	NA	NA	NA	5500	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.080000	0.532338	
mm_87402.1	chr10	45633736	45633936	+	1	NA	NA	NA	56007	NM_172473	209462	Mm.458633	NM_172473	ENSMUSG00000038822	Hace1	1700042J16Rik|A730034A22Rik|BC025474	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	protein-coding	0.005000	0.383085	
mm_113088.1	chr13	23892713	23892913	+	1	NA	NA	NA	22194	NM_177016	319848	Mm.97959	NM_177016	ENSMUSG00000021336	Slc17a4	9130214H05Rik	solute carrier family 17 (sodium phosphate), member 4	protein-coding	0.015000	0.507463	
mm_26300.1	chr3	142508140	142508340	+	1	NA	NA	NA	11306	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.010000	0.507463	
mm_55984.1	chr6	85945869	85946069	-	1	NA	NA	NA	15698	NM_028099	72102	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	0.010000	0.388060	
mm_152333.1	chr19	9974765	9974965	-	1	NA	NA	NA	-5735	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.000000	0.522388	
mm_161112.1	chr12	104387067	104387267	+	1	NA	NA	NA	3	NM_009253	20717	Mm.395085	NM_009253	ENSMUSG00000079012	Serpina3m	3e46|AI195004|MMCM7|MMSPi2.4|Spi-2l|Spi-2rs1|Spi2-rs1|Spi2.4|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3M	protein-coding	0.005000	0.517413	
mm_23264.1	chr3	51483853	51484053	+	1	NA	NA	NA	-13	NM_016858	19338	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.120000	0.731343	
mm_143023.1	chr17	56571149	56571349	-	1	NA	NA	NA	13334	NM_001029979	224902	Mm.214973	NM_001029979	ENSMUSG00000042625	Safb2	AA389433|AI255170|mKIAA0138	scaffold attachment factor B2	protein-coding	0.025000	0.557214	
mm_105174.1	chr11	101784571	101784771	-	1	NA	NA	NA	639	NM_008815	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.120000	0.746269	
mm_47958.1	chr5	135586025	135586225	-	1	NA	NA	NA	-13082	NM_019577	56221	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0.000000	0.532338	
mm_112837.1	chr13	20826393	20826593	+	1	NA	NA	NA	32380	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.522388	
mm_76494.1	chr8	86580554	86580754	-	1	NA	NA	NA	-14064	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	0.000000	0.587065	-82(CCTTTAATGTGG,+,0.00)
mm_128638.1	chr15	59270129	59270329	-	1	NA	NA	NA	-36719	NR_045613	100416830	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0.030000	0.577114	
mm_91586.1	chr10	40246918	40247118	-	1	NA	NA	NA	21	NM_023323	67239	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	0.100000	0.597015	
mm_31479.1	chr4	52240766	52240966	+	1	NA	NA	NA	-189756	NR_040668	329844	Mm.128934	NR_040668	ENSMUSG00000085515	C630028M04Rik	-	RIKEN cDNA C630028M04 gene	ncRNA	0.020000	0.427861	
mm_154722.1	chrX	9272731	9272931	+	1	NA	NA	NA	47	NM_023500	22439	Mm.56468	NM_023500	ENSMUSG00000015342	Xk	1810038K19Rik|XRG1|Xkh	X-linked Kx blood group	protein-coding	0.145000	0.771144	
mm_2985.1	chr1	133131323	133131523	+	1	NA	NA	NA	257	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.125000	0.676617	
mm_162791.1	chr10	75643895	75644095	-	1	NA	NA	NA	13	NM_001162913	71733	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0.025000	0.646766	
mm_36515.1	chr4	84383830	84384030	-	1	NA	NA	NA	291156	NM_172870	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.000000	0.393035	
mm_33210.1	chr4	126556882	126557082	+	1	NA	NA	NA	2	NM_175554	269582	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	0.090000	0.631841	
mm_141038.1	chr17	25273727	25273927	-	1	NA	NA	NA	87	NM_001177609	22196	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|F830028O17Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	0.055000	0.572139	
mm_1108.1	chr1	59764175	59764375	+	1	NA	NA	NA	-4	NM_007561	12168	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0.065000	0.606965	
mm_173063.1	chrX	13280680	13280880	+	1	NA	NA	NA	-242	NM_010028	13205	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	0.050000	0.502488	
mm_64082.1	chr7	140942975	140943175	+	1	NA	NA	NA	1494	NM_145387	212974	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0.040000	0.601990	
mm_60604.1	chr7	44572254	44572454	+	1	NA	NA	NA	-91	NM_008437	16541	Mm.383181	NM_008437	ENSMUSG00000002204	Napsa	KAP|Kdap|NAP1|SNAPA|pronapsin	napsin A aspartic peptidase	protein-coding	0.015000	0.477612	
mm_169358.1	chr14	27428596	27428796	-	1	NA	NA	NA	-151	NM_028945	218850	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0.095000	0.656716	
mm_34959.1	chr4	155996248	155996448	+	1	NA	NA	NA	3011	NM_001302468	20318	Mm.293517	NM_011341	ENSMUSG00000029076	Sdf4	Cab45	stromal cell derived factor 4	protein-coding	0.015000	0.542289	
mm_39233.1	chr4	156254453	156254653	-	1	NA	NA	NA	785	NM_001110516	231004	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	0.050000	0.592040	
mm_73599.1	chr8	109998792	109998992	+	1	NA	NA	NA	8456	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.020000	0.562189	
mm_59785.1	chr7	28895084	28895284	+	1	NA	NA	NA	13528	NM_001110807	60594	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	0.010000	0.597015	
mm_36939.1	chr4	108579241	108579441	-	1	NA	NA	NA	-5	NM_172697	230596	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	0.100000	0.592040	
mm_170512.1	chr19	29003763	29003963	-	1	NA	NA	NA	13511	NM_025950	67072	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	0.050000	0.388060	
mm_112489.1	chr13	6548064	6548264	+	1	NA	NA	NA	7	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.095000	0.646766	
mm_12163.1	chr2	62325838	62326038	+	1	NA	NA	NA	86293	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.000000	0.263682	-33(GCTTTAATACAA,+,0.00)
mm_170142.1	chr17	41367131	41367331	-	1	NA	NA	NA	432546	NM_008650	17850	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding	0.030000	0.567164	-38(CCCTTTATAAGC,+,0.00),-38(CCCTTTATAAGC,-,0.00),-36(CTTTATAAGCAC,+,0.00)
mm_132469.1	chr16	36693931	36694131	+	1	NA	NA	NA	53	NM_001285791	106347	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.085000	0.691542	
mm_1560.1	chr1	74153892	74154092	+	1	NA	NA	NA	-2	NM_009909	12765	Mm.234466	NM_009909	ENSMUSG00000026180	Cxcr2	CD128|CDw128|Cmkar2|Gpcr16|IL-8Rh|IL-8rb|IL8RA|Il8rb|mIL-8RH	chemokine (C-X-C motif) receptor 2	protein-coding	0.010000	0.572139	
mm_97426.1	chr11	78071815	78072015	+	1	NA	NA	NA	-1090	NR_029556	387162		NR_029556	ENSMUSG00000065401	Mir144	Mirn144|mir-144|mmu-mir-144	microRNA 144	ncRNA	0.010000	0.517413	
mm_146369.1	chr18	82584512	82584712	+	1	NA	NA	NA	30104	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.015000	0.557214	-24(CCCCCTAAAGAG,-,0.00)
mm_144467.1	chr18	23753647	23753847	+	1	NA	NA	NA	22	NM_001162941	212307	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.050000	0.552239	
mm_151995.1	chr19	5875174	5875374	-	1	NA	NA	NA	-66	NM_026169	67457	Mm.202092	NM_026169	ENSMUSG00000024816	Frmd8	1200004M23Rik|2310035N23Rik|4931429L16Rik|AU018809	FERM domain containing 8	protein-coding	0.100000	0.641791	
mm_33977.1	chr4	137681504	137681704	+	1	NA	NA	NA	-23	NM_001081155	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.125000	0.766169	
mm_148511.1	chr19	4231819	4232019	+	1	NA	NA	NA	26	NM_027196	69745	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0.035000	0.562189	
mm_108117.1	chr12	75669722	75669922	+	1	NA	NA	NA	-285	NM_028203	72338	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0.055000	0.542289	
mm_150037.1	chr19	29377245	29377445	+	1	NA	NA	NA	9907	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.015000	0.462687	
mm_64222.1	chr7	141613730	141613930	+	1	NA	NA	NA	-83	NR_040337	100036523	Mm.398994	NR_040337	ENSMUSG00000097170	Gm16982	-	predicted gene, 16982	ncRNA	0.010000	0.577114	
mm_22904.1	chr3	30855920	30856120	+	1	NA	NA	NA	70	NM_001286994	71862	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.115000	0.701493	
mm_67807.1	chr7	98117691	98117891	-	1	NA	NA	NA	1702	NM_001256081	17921	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.025000	0.587065	
mm_69959.1	chr7	142376250	142376450	-	1	NA	NA	NA	-2604	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.010000	0.577114	
mm_168793.1	chr12	19387728	19387928	+	1	NA	NA	NA	873318	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.110000	0.736318	
mm_18752.1	chr2	73394193	73394393	-	1	NA	NA	NA	-7813	NM_001276444	68526	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0.005000	0.512438	
mm_29715.1	chr3	123690767	123690967	-	1	NA	NA	NA	-15	NR_121616	83398	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	0.140000	0.786070	
mm_119940.1	chr14	54983248	54983448	+	1	NA	NA	NA	-7572	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.000000	0.512438	
mm_133498.1	chr16	90430423	90430623	+	1	NA	NA	NA	44126	NM_015755	26559	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.010000	0.527363	
mm_91657.1	chr10	42698985	42699185	-	1	NA	NA	NA	20169	NM_172416	14628	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0.015000	0.492537	
mm_98338.1	chr11	93014357	93014557	+	1	NA	NA	NA	-84833	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	0.010000	0.482587	
mm_1740.1	chr1	75442281	75442481	+	1	NA	NA	NA	6438	NM_133708	69080	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	0.005000	0.606965	
mm_61472.1	chr7	75612222	75612422	+	1	NA	NA	NA	156788	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.025000	0.477612	43(CTTCTTATGGCC,+,0.00)
mm_116697.1	chr13	49652802	49653002	-	1	NA	NA	NA	-171	NM_025495	66336	Mm.440323	NM_025495	ENSMUSG00000021391	Cenpp	1700022C02Rik|4921518G09Rik	centromere protein P	protein-coding	0.145000	0.696517	
mm_106226.1	chr11	117165630	117165830	-	1	NA	NA	NA	-33931	NM_001113486	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.025000	0.522388	
mm_108194.1	chr12	76775035	76775235	+	1	NA	NA	NA	9562	NM_206534	211151	Mm.80970	NM_206534	ENSMUSG00000090258	Churc1	1700030P15Rik|My015|chch	churchill domain containing 1	protein-coding	0.000000	0.477612	
mm_145442.1	chr18	59175270	59175470	+	1	NA	NA	NA	30	NM_001081328	78923	Mm.84007	NM_001081328	ENSMUSG00000058152	Chsy3	4833446K15Rik|AI662215	chondroitin sulfate synthase 3	protein-coding	0.130000	0.751244	
mm_12343.1	chr2	69741413	69741613	+	1	NA	NA	NA	18425	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.020000	0.398010	-37(GTTTTTAAAGTT,+,0.00)
mm_55199.1	chr6	52204227	52204427	-	1	NA	NA	NA	260	NM_010453	15402	Mm.173	NM_010453	ENSMUSG00000038253	Hoxa5	Hox-1.3	homeobox A5	protein-coding	0.055000	0.442786	
mm_9202.1	chr1	171229507	171229707	-	1	NA	NA	NA	4553	NM_013474	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.015000	0.427861	
mm_150145.1	chr19	31873437	31873637	+	1	NA	NA	NA	4776	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.005000	0.323383	
mm_168848.1	chr12	23969003	23969203	-	1	NA	NA	NA	128166	NM_001256489	66808	Mm.379124	NM_001256489	ENSMUSG00000073158	9030624G23Rik	-	RIKEN cDNA 9030624G23 gene	protein-coding	0.125000	0.761194	
mm_91779.1	chr10	52195222	52195422	-	1	NA	NA	NA	-78	NM_011282	19886	Mm.236163	NM_011282	ENSMUSG00000019893	Ros1	Ros-1|c-ros	Ros1 proto-oncogene	protein-coding	0.020000	0.462687	
mm_131269.1	chr16	10837891	10838091	+	1	NA	NA	NA	2932	NM_001162932	223970	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.005000	0.582090	
mm_93434.1	chr10	109010789	109010989	-	1	NA	NA	NA	86	NM_009306	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding	0.035000	0.641791	
mm_21293.1	chr2	157006769	157006969	-	1	NA	NA	NA	206	NM_025853	66934	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0.080000	0.701493	
mm_159926.1	chr6	57844185	57844385	-	1	NA	NA	NA	172	NM_134183	171201	Mm.377179	NM_134183	ENSMUSG00000058588	Vmn1r21	V1rc28	vomeronasal 1 receptor 21	protein-coding	0.000000	0.388060	
mm_48235.1	chr5	137720674	137720874	-	1	NA	NA	NA	19224	NM_175521	243300	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	0.010000	0.517413	
mm_160573.1	chr9	57834054	57834254	-	1	NA	NA	NA	80	NM_019689	56380	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0.005000	0.557214	
mm_153708.1	chr19	44397792	44397992	-	1	NA	NA	NA	9817	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.020000	0.407960	
mm_108554.1	chr12	84417214	84417414	+	1	NA	NA	NA	114	NM_025525	66381	Mm.24846	NM_025525	ENSMUSG00000098134	Rnf113a2	2310020H19Rik|AI426758|Rnf113a	ring finger protein 113A2	protein-coding	0.100000	0.626866	
mm_78567.1	chr9	35909496	35909696	+	1	NA	NA	NA	-59716	NR_030730	100041605	Mm.99350	NR_030730	ENSMUSG00000098705	Gm3428	-	predicted gene 3428	ncRNA	0.005000	0.328358	
mm_129933.1	chr15	84854977	84855177	-	1	NA	NA	NA	1052	NM_001081166	271305	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.105000	0.696517	
mm_6805.1	chr1	84155858	84156058	-	1	NA	NA	NA	63003	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.303483	
mm_117377.1	chr13	72628475	72628675	-	1	NA	NA	NA	-11	NR_030701	328287	Mm.235072	NR_030701		Gm20554	D430050G20	predicted gene, 20554	ncRNA	0.065000	0.701493	
mm_60557.1	chr7	44481094	44481294	+	1	NA	NA	NA	-3323	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.482587	
mm_60636.1	chr7	44816296	44816496	+	1	NA	NA	NA	26	NM_001171024	100328588	Mm.2565	NM_001171024	ENSMUSG00000074141	Gm21948	Nup62-il4i1	predicted gene, 21948	protein-coding	0.120000	0.686567	
mm_72159.1	chr8	72189539	72189739	+	1	NA	NA	NA	-29	NM_197944	209488	Mm.157431	NM_197944	ENSMUSG00000062007	Hsh2d	ALX|Hsh2	hematopoietic SH2 domain containing	protein-coding	0.015000	0.567164	
mm_144470.1	chr18	23803908	23804108	+	1	NA	NA	NA	38	NM_153058	212307	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.080000	0.706468	
mm_59708.1	chr7	28716754	28716954	+	1	NA	NA	NA	64	NM_015796	50760	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	0.065000	0.686567	
mm_64592.1	chr7	3169048	3169248	-	1	NA	NA	NA	55	NM_001004153	245128	Mm.268551	NM_001004153	ENSMUSG00000054753	AU018091	-	expressed sequence AU018091	protein-coding	0.010000	0.542289	
mm_20165.1	chr2	122152974	122153174	-	1	NA	NA	NA	5387	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.010000	0.383085	
mm_136862.1	chr17	12821987	12822187	+	1	NA	NA	NA	46056	NM_008552	17171	Mm.425994	NM_008552	ENSMUSG00000068037	Mas1	Mas-1|Mgra	MAS1 oncogene	protein-coding	0.000000	0.333333	
mm_25678.1	chr3	122077054	122077254	+	1	NA	NA	NA	32694	NM_007378	11304	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0.000000	0.383085	
mm_89755.1	chr10	99298991	99299191	+	1	NA	NA	NA	35860	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.020000	0.507463	-33(GCCTATAAAAAT,-,0.00)
mm_79288.1	chr9	51213450	51213650	+	1	NA	NA	NA	-140	NM_011136	18985	Mm.897	NM_011136	ENSMUSG00000032053	Pou2af1	BOB.1|Bob-1|Bob1|OBF-1|OBF.1|OCA-B|OCAB	POU domain, class 2, associating factor 1	protein-coding	0.015000	0.582090	
mm_107429.1	chr12	35579448	35579648	+	1	NA	NA	NA	-44559	NM_001314027	11622	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0.020000	0.467662	
mm_12740.1	chr2	78972633	78972833	+	1	NA	NA	NA	103686	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.015000	0.482587	
mm_86261.1	chr9	121597112	121597312	-	1	NA	NA	NA	10192	NR_040740	75384	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	0.015000	0.482587	
mm_43621.1	chr5	138161038	138161238	+	1	NA	NA	NA	36	NM_012002	26893	Mm.3981	NM_012002	ENSMUSG00000019494	Cops6	Sgn3|VIP/MOV34	COP9 signalosome subunit 6	protein-coding	0.095000	0.666667	
mm_55402.1	chr6	60828758	60828958	-	1	NA	NA	NA	146	NM_001042451	20617	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alphaSYN	synuclein, alpha	protein-coding	0.055000	0.646766	
mm_112939.1	chr13	20986200	20986400	+	1	NA	NA	NA	86999	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.005000	0.447761	5(GCTTTTCAGGGC,+,0.00)
mm_125715.1	chr15	68928373	68928573	+	1	NA	NA	NA	53	NM_010158	13992	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding	0.150000	0.771144	
mm_3566.1	chr1	150433669	150433869	+	1	NA	NA	NA	32396	NM_021400	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.025000	0.497512	
mm_49786.1	chr6	35177816	35178016	+	1	NA	NA	NA	300	NM_027513	70699	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	0.125000	0.706468	
mm_124566.1	chr14	124094993	124095193	-	1	NA	NA	NA	97453	NM_010201	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.005000	0.338308	
mm_78631.1	chr9	39073927	39074127	+	1	NA	NA	NA	4716	NM_146438	258430	Mm.271358	NM_146438	ENSMUSG00000048501	Olfr938	MOR171-25	olfactory receptor 938	protein-coding	0.045000	0.412935	
mm_75795.1	chr8	70108418	70108618	-	1	NA	NA	NA	-5932	NR_106033	102465646		NR_106033	ENSMUSG00000099042	Mir7066	Gm27290|mmu-mir-7066	microRNA 7066	ncRNA	0.040000	0.661692	
mm_124798.1	chr15	8444641	8444841	+	1	NA	NA	NA	-278	NM_201232	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.145000	0.751244	
mm_108620.1	chr12	85598198	85598398	+	1	NA	NA	NA	-807	NM_001205052	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.015000	0.497512	
mm_94355.1	chr11	4947274	4947474	+	1	NA	NA	NA	-147	NM_001243043	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.160000	0.776119	
mm_119593.1	chr14	50952154	50952354	+	1	NA	NA	NA	-3887	NM_001123371	667034	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	0.015000	0.398010	
mm_117356.1	chr13	69933150	69933350	-	1	NA	NA	NA	-26583	NR_138559	67550	Mm.158159	NR_138559		4933416O17Rik	-	RIKEN cDNA 4933416O17 gene	ncRNA	0.030000	0.427861	
mm_49400.1	chr6	28426207	28426407	+	1	NA	NA	NA	-1594	NM_019569	56223	Mm.31708	NM_019569	ENSMUSG00000029707	Fscn3	-	fascin actin-bundling protein 3	protein-coding	0.015000	0.646766	
mm_101628.1	chr11	36007767	36007967	-	1	NA	NA	NA	-27778	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.045000	0.467662	
mm_59520.1	chr7	27605721	27605921	+	1	NA	NA	NA	24	NM_007434	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.025000	0.601990	
mm_63946.1	chr7	139834236	139834436	+	1	NA	NA	NA	162	NM_177469	52389	Mm.39863	NM_177469	ENSMUSG00000025475	Adgra1	2900059M17Rik|D7Ertd680e|Gpr123	adhesion G protein-coupled receptor A1	protein-coding	0.040000	0.597015	
mm_87727.1	chr10	60106359	60106559	+	1	NA	NA	NA	202	NM_052994	94214	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.080000	0.686567	
mm_2484.1	chr1	105988262	105988462	+	1	NA	NA	NA	-2044	NM_001122676	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.010000	0.477612	
mm_12963.1	chr2	90599418	90599618	+	1	NA	NA	NA	-18871	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.005000	0.373134	-78(GTCTATATATGA,-,0.00)
mm_98803.1	chr11	97041486	97041686	+	1	NA	NA	NA	0	NM_026154	107732	Mm.208946	NM_026154	ENSMUSG00000001445	Mrpl10	0610040E02Rik|C78440|MRP-L8|Rpml8	mitochondrial ribosomal protein L10	protein-coding	0.080000	0.582090	
mm_150132.1	chr19	30042673	30042873	+	1	NA	NA	NA	12260	NM_144873	109113	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0.005000	0.333333	
mm_7616.1	chr1	126738099	126738299	-	1	NA	NA	NA	92433	NM_001081756	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.040000	0.557214	
mm_142485.1	chr17	45746711	45746911	-	1	NA	NA	NA	-12967	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0.040000	0.597015	
mm_89848.1	chr10	107271246	107271446	+	1	NA	NA	NA	-485	NM_001039354	108030	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding	0.025000	0.432836	
mm_89358.1	chr10	88357094	88357294	+	1	NA	NA	NA	-119	NM_027878	71712	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.135000	0.716418	
mm_167959.1	chrX	142297403	142297603	+	1	NA	NA	NA	-2	NR_002883	434858	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.025000	0.437811	
mm_19505.1	chr2	93822429	93822629	-	1	NA	NA	NA	39	NM_010163	14043	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	0.140000	0.746269	
mm_120973.1	chr14	78434904	78435104	+	1	NA	NA	NA	87698	NM_001346784	219181	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	0.020000	0.512438	
mm_5845.1	chr1	52963158	52963358	-	1	NA	NA	NA	-10418	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.005000	0.482587	
mm_94833.1	chr11	23497667	23497867	+	1	NA	NA	NA	272	NM_001290655	268390	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	0.125000	0.751244	
mm_101218.1	chr11	20140210	20140410	-	1	NA	NA	NA	-27359	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.010000	0.457711	
mm_47570.1	chr5	124478215	124478415	-	1	NA	NA	NA	-80	NM_030259	80291	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.075000	0.631841	
mm_102221.1	chr11	54909780	54909980	-	1	NA	NA	NA	7026	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.015000	0.477612	
mm_93152.1	chr10	93081414	93081614	-	1	NA	NA	NA	82	NM_001347060	380654	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	0.095000	0.621891	
mm_117085.1	chr13	59731646	59731846	-	1	NA	NA	NA	6	NM_177711	238663	Mm.444776	NM_177711	ENSMUSG00000043986	Spata31d1d	4932411G14Rik|Fam75d1d	spermatogenesis associated 31 subfamily D, member 1D	protein-coding	0.010000	0.527363	
mm_166373.1	chr5	128444242	128444442	+	1	NA	NA	NA	-11265	NM_172885	243274	Mm.447698	NM_172885	ENSMUSG00000034310	Tmem132d	C630028F04Rik	transmembrane protein 132D	protein-coding	0.070000	0.606965	43(GTTTTAAAACGG,+,0.00)
mm_140825.1	chr17	23641645	23641845	-	1	NA	NA	NA	3524	NM_001033339	240047	Mm.235343	NM_001033339	ENSMUSG00000023903	Mmp25	F730048C11Rik|Leukolysin|MMP20|MT6-MMP	matrix metallopeptidase 25	protein-coding	0.020000	0.432836	-32(TGCTAGAAAAGG,-,0.00)
mm_112180.1	chr12	113421993	113422193	-	1	NA	NA	NA	-67472	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.030000	0.502488	
mm_33208.1	chr4	126556857	126557057	+	1	NA	NA	NA	-23	NM_175554	269582	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	0.095000	0.631841	
mm_59988.1	chr7	30554683	30554883	+	1	NA	NA	NA	1481	NM_001012401	243912	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	0.035000	0.567164	-100(TCTTTTAAAAGC,+,0.00),-100(TCTTTTAAAAGC,-,0.00),-99(CTTTTAAAAGCC,+,0.00)
mm_171163.1	chr3	25212624	25212824	-	1	NA	NA	NA	-428718	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.040000	0.447761	
mm_110351.1	chr12	37474897	37475097	-	1	NA	NA	NA	233358	NM_178767	319660	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	0.015000	0.467662	
mm_168121.1	chr10	19288832	19289032	-	1	NA	NA	NA	-67607	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20|oligo3	oligodendrocyte transcription factor 3	protein-coding	0.030000	0.572139	
mm_29261.1	chr3	107310268	107310468	-	1	NA	NA	NA	19076	NM_146136	229699	Mm.38384	NM_146136	ENSMUSG00000027896	Slc16a4	AW146050|MCT 5	solute carrier family 16 (monocarboxylic acid transporters), member 4	protein-coding	0.000000	0.298507	
mm_108083.1	chr12	73964454	73964654	+	1	NA	NA	NA	24	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.095000	0.671642	
mm_60057.1	chr7	31151425	31151625	+	1	NA	NA	NA	-475	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.055000	0.611940	
mm_61934.1	chr7	90168206	90168406	+	1	NA	NA	NA	38074	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.303483	
mm_75085.1	chr8	33917212	33917412	-	1	NA	NA	NA	12551	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.015000	0.442786	-87(GGCCATTTGAGG,-,0.00)
mm_16923.1	chr2	13581570	13581770	-	1	NA	NA	NA	7359	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.005000	0.328358	
mm_17194.1	chr2	25467818	25468018	-	1	NA	NA	NA	1831	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.020000	0.542289	
mm_3209.1	chr1	135827188	135827388	+	1	NA	NA	NA	8690	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding	0.020000	0.592040	
mm_11567.1	chr2	32887302	32887502	+	1	NA	NA	NA	11268	NM_146119	227737	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.000000	0.457711	
mm_143.1	chr1	10998603	10998803	+	1	NA	NA	NA	5238	NM_029525	109294	Mm.123247	NM_029525	ENSMUSG00000048960	Prex2	6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	protein-coding	0.000000	0.338308	
mm_40930.1	chr5	76529245	76529445	+	1	NA	NA	NA	34	NM_001289770	69940	Mm.403233	NM_027270	ENSMUSG00000036435	Exoc1	2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p	exocyst complex component 1	protein-coding	0.055000	0.562189	
mm_102294.1	chr11	55419749	55419949	-	1	NA	NA	NA	231	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.025000	0.636816	
mm_63697.1	chr7	130627736	130627936	+	1	NA	NA	NA	50352	NM_206856	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.010000	0.482587	
mm_169310.1	chr14	104715848	104716048	-	1	NA	NA	NA	76801	NR_015593	320249	Mm.320725	NR_015593		D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0.080000	0.532338	38(AACTTTAAATGG,-,0.00)
mm_71671.1	chr8	60674452	60674652	+	1	NA	NA	NA	18995	NM_001177882	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	0.000000	0.393035	-29(TCCTCTTTAAGG,-,0.00),12(TACTTTAAAAGG,-,0.00)
mm_73174.1	chr8	95055010	95055210	+	1	NA	NA	NA	7	NM_001042715	330830	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.005000	0.542289	
mm_87087.1	chr10	31313337	31313537	+	1	NA	NA	NA	32	NM_027168	69692	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	0.060000	0.656716	
mm_132198.1	chr16	32520702	32520902	+	1	NA	NA	NA	24521	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.010000	0.412935	
mm_33670.1	chr4	133189048	133189248	+	1	NA	NA	NA	-6507	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.015000	0.472637	
mm_15873.1	chr2	164835154	164835354	+	1	NA	NA	NA	1481	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.015000	0.522388	-77(GCCCTTAAAGAC,-,0.00)
mm_12823.1	chr2	80317259	80317459	+	1	NA	NA	NA	1893	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.015000	0.412935	
mm_16914.1	chr2	13493600	13493800	-	1	NA	NA	NA	-1824	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.005000	0.477612	
mm_161369.1	chr14	64086178	64086378	+	1	NA	NA	NA	-2	NM_001347631	100504162	Mm.72752	NM_001193631	ENSMUSG00000052099	Prss51	1700007N14Rik	protease, serine 51	protein-coding	0.000000	0.398010	
mm_50518.1	chr6	49040776	49040976	+	1	NA	NA	NA	4358	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.000000	0.442786	
mm_32583.1	chr4	110817748	110817948	+	1	NA	NA	NA	420150	NM_030231	78933	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	0.005000	0.363184	-88(GGGCATATAAAG,-,0.00)
mm_14116.1	chr2	125866225	125866425	+	1	NA	NA	NA	102	NM_001291002	69976	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	0.045000	0.577114	
mm_28247.1	chr3	88503241	88503441	-	1	NA	NA	NA	11	NM_001111102	16905	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.035000	0.626866	-39(TCCTTTAAGAGC,-,0.00),-38(CCTTTAAGAGCA,+,0.00),-1(GCCTATTAGAGC,-,0.00)
mm_2285.1	chr1	91338582	91338782	+	1	NA	NA	NA	-12391	NM_027551	70788	Mm.68617	NM_027551	ENSMUSG00000026308	Klhl30	4631423F02Rik	kelch-like 30	protein-coding	0.055000	0.641791	18(GCCTCTAAGAGC,-,0.00),19(CCTCTAAGAGCC,+,0.00)
mm_151061.1	chr19	47228934	47229134	+	1	NA	NA	NA	191	NM_001163480	18011	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.040000	0.676617	
mm_75312.1	chr8	41215057	41215257	-	1	NA	NA	NA	-1	NM_145594	234199	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding	0.005000	0.417910	
mm_125036.1	chr15	25758686	25758886	+	1	NA	NA	NA	-84512	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.025000	0.587065	
mm_52813.1	chr6	121343721	121343921	+	1	NA	NA	NA	745	NM_001347433	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.010000	0.537313	
mm_41504.1	chr5	92346544	92346744	+	1	NA	NA	NA	2245	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.005000	0.358209	
mm_104595.1	chr11	97114435	97114635	-	1	NA	NA	NA	796	NM_019507	57765	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0.080000	0.552239	
mm_13267.1	chr2	98666754	98666954	+	1	NA	NA	NA	1199197	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.035000	0.363184	
mm_124231.1	chr14	101200219	101200419	-	1	NA	NA	NA	-250	NM_029680	76627	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	0.025000	0.582090	
mm_104906.1	chr11	99643988	99644188	-	1	NA	NA	NA	1	NM_029613	76444	Mm.348022	NM_029613	ENSMUSG00000045109	Krtap4-7	2310037K05Rik|KAP4.7|KRTAP4.7	keratin associated protein 4-7	protein-coding	0.005000	0.497512	-35(GAGTATAAAAGG,-,0.00)
mm_29479.1	chr3	115712447	115712647	-	1	NA	NA	NA	2508	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.035000	0.547264	
mm_143156.1	chr17	57223774	57223974	-	1	NA	NA	NA	4262	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.030000	0.582090	
mm_108517.1	chr12	84042421	84042621	+	1	NA	NA	NA	4142	NM_134247	171282	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	0.020000	0.447761	75(TGCCATAAAAGA,-,0.00)
mm_25434.1	chr3	107897198	107897398	+	1	NA	NA	NA	-1085	NR_015459	329735	Mm.270500	NM_177858	ENSMUSG00000086968	4933431E20Rik	-	RIKEN cDNA 4933431E20 gene	ncRNA	0.025000	0.522388	
mm_122360.1	chr14	39240090	39240290	-	1	NA	NA	NA	-232239	NR_131973	432842	Mm.352566	NR_131973		LOC432842	-	uncharacterized LOC432842	ncRNA	0.000000	0.348259	
mm_99355.1	chr11	101587840	101588040	+	1	NA	NA	NA	5698	NM_144830	217203	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.030000	0.542289	
mm_96606.1	chr11	69091393	69091593	+	1	NA	NA	NA	2965	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.010000	0.552239	
mm_78552.1	chr9	35423486	35423686	+	1	NA	NA	NA	-28490	NM_021339	57810	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	0.005000	0.482587	-35(GCATATATAAAG,-,0.00)
mm_73817.1	chr8	117401468	117401668	+	1	NA	NA	NA	-51455	NR_106045	102466801		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.000000	0.398010	
mm_157272.1	chrX	20171339	20171539	-	1	NA	NA	NA	111869	NM_021715	60322	Mm.44827	NM_021715	ENSMUSG00000037347	Chst7	2600013M07Rik|C6ST-2|GST5|Gn6st-4|glcNAc6ST-4	carbohydrate (N-acetylglucosamino) sulfotransferase 7	protein-coding	0.000000	0.437811	
mm_12352.1	chr2	69749387	69749587	+	1	NA	NA	NA	26399	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.015000	0.402985	
mm_147623.1	chr18	58072748	58072948	-	1	NA	NA	NA	137078	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.015000	0.522388	
mm_114565.1	chr13	74609131	74609331	+	1	NA	NA	NA	-30641	NM_030711	80898	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0.010000	0.398010	
mm_111488.1	chr12	98901217	98901417	-	1	NA	NA	NA	167	NM_001081191	319670	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	0.135000	0.746269	
mm_144784.1	chr18	35854625	35854825	+	1	NA	NA	NA	24907	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.005000	0.552239	
mm_4660.1	chr1	180364553	180364753	+	1	NA	NA	NA	-34104	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.015000	0.407960	
mm_126609.1	chr15	82898949	82899149	+	1	NA	NA	NA	-31	NR_045068	100504637	Mm.440928	NR_045068	ENSMUSG00000100199	Gm20324	-	predicted gene, 20324	ncRNA	0.110000	0.776119	
mm_63308.1	chr7	126861867	126862067	+	1	NA	NA	NA	-5	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	0.075000	0.567164	79(CTGTTTATAAAG,-,0.00)
mm_95103.1	chr11	34047552	34047752	+	1	NA	NA	NA	451	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.015000	0.487562	
mm_157532.1	chrX	51018632	51018832	-	1	NA	NA	NA	-714	NM_172413	72065	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	0.080000	0.706468	
mm_8453.1	chr1	153127044	153127244	-	1	NA	NA	NA	59303	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.010000	0.532338	
mm_74483.1	chr8	4325003	4325203	-	1	NA	NA	NA	-3	NM_010485	15568	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	0.175000	0.721393	
mm_152154.1	chr19	7241054	7241254	-	1	NA	NA	NA	68	NM_027643	70999	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	0.175000	0.736318	
mm_16440.1	chr2	180397248	180397448	+	1	NA	NA	NA	-1031	NR_029901	723954		NR_029901	ENSMUSG00000065460	Mir133a-2	Mirn133a-2|mir-133a-2	microRNA 133a-2	ncRNA	0.020000	0.562189	
mm_5362.1	chr1	25829696	25829896	-	1	NA	NA	NA	-89	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.040000	0.547264	
mm_71851.1	chr8	68905982	68906182	+	1	NA	NA	NA	25527	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.000000	0.338308	
mm_137025.1	chr17	17873642	17873842	+	1	NA	NA	NA	10197	NM_013521	14293	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0.005000	0.398010	
mm_49784.1	chr6	35177720	35177920	+	1	NA	NA	NA	204	NM_027513	70699	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	0.170000	0.786070	
mm_143861.1	chr17	84186206	84186406	-	1	NA	NA	NA	1641	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.155000	0.781095	
mm_82173.1	chr9	123850956	123851156	+	1	NA	NA	NA	605	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.005000	0.477612	
mm_77501.1	chr8	122678056	122678256	-	1	NA	NA	NA	19	NM_001109873	12398	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0.185000	0.820896	
mm_150465.1	chr19	38395709	38395909	+	1	NA	NA	NA	-171	NM_175507	240660	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	0.040000	0.636816	
mm_6383.1	chr1	72805984	72806184	-	1	NA	NA	NA	-18396	NM_008342	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.000000	0.542289	
mm_81029.1	chr9	104569549	104569749	+	1	NA	NA	NA	-139	NM_028719	74020	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	0.050000	0.631841	
mm_19326.1	chr2	90572109	90572309	-	1	NA	NA	NA	8438	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.010000	0.492537	
mm_122060.1	chr14	30353489	30353689	-	1	NA	NA	NA	-103	NM_001083616	12289	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.210000	0.875622	
mm_37440.1	chr4	123139845	123140045	-	1	NA	NA	NA	-4	NM_019489	56031	Mm.126873	NM_019489	ENSMUSG00000028651	Ppie	2010010D16Rik|Cyp33	peptidylprolyl isomerase E (cyclophilin E)	protein-coding	0.095000	0.676617	
mm_16444.1	chr2	180442954	180443154	+	1	NA	NA	NA	-17924	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.015000	0.537313	
mm_141792.1	chr17	34342864	34343064	-	1	NA	NA	NA	1681	NM_010381	100504404	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	0.030000	0.477612	
mm_93600.1	chr10	117215748	117215948	-	1	NA	NA	NA	8659	NM_026570	64050	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0.010000	0.462687	
mm_90712.1	chr10	4387358	4387558	-	1	NA	NA	NA	650	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.155000	0.800995	
mm_25690.1	chr3	122245816	122246016	+	1	NA	NA	NA	359	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.155000	0.810945	
mm_105770.1	chr11	109676039	109676239	-	1	NA	NA	NA	25218	NM_001313976	19084	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.020000	0.577114	
mm_153090.1	chr19	32389806	32390006	-	1	NA	NA	NA	690	NR_033198	67188	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	0.050000	0.537313	
mm_41407.1	chr5	90786573	90786773	+	1	NA	NA	NA	572	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.010000	0.447761	
mm_12291.1	chr2	69035798	69035998	+	1	NA	NA	NA	-99902	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.000000	0.373134	
mm_124071.1	chr14	78583863	78584063	-	1	NA	NA	NA	45327	NM_001253766	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.000000	0.457711	
mm_15391.1	chr2	156720990	156721190	+	1	NA	NA	NA	125	NM_001042488	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.160000	0.771144	
mm_171876.1	chr5	31206056	31206256	-	1	NA	NA	NA	-3853	NM_175311	101023	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	0.020000	0.537313	
mm_120280.1	chr14	63130837	63131037	+	1	NA	NA	NA	8475	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.015000	0.512438	
mm_112563.1	chr13	13490017	13490217	+	1	NA	NA	NA	52515	NM_010917	18073	Mm.4691	NM_010917	ENSMUSG00000005397	Nid1	A630025O17|Nid|entactin|entactin-1|nidogen-1	nidogen 1	protein-coding	0.025000	0.542289	
mm_63024.1	chr7	121034688	121034888	+	1	NA	NA	NA	343	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.130000	0.751244	
mm_142304.1	chr17	42741969	42742169	-	1	NA	NA	NA	110	NM_001033493	435529	Mm.136350	NM_001033493	ENSMUSG00000057899	Adgrf2	Gpr111|PGR20	adhesion G protein-coupled receptor F2	protein-coding	0.025000	0.592040	
mm_65115.1	chr7	19327150	19327350	-	1	NA	NA	NA	-17205	NM_001347586	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.060000	0.621891	
mm_37770.1	chr4	129810814	129811014	-	1	NA	NA	NA	-9565	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.075000	0.621891	
mm_124561.1	chr14	123626765	123626965	-	1	NA	NA	NA	279	NM_177393	338370	Mm.255348	NM_177393	ENSMUSG00000000197	Nalcn	A530023G15Rik|AI849508|Vgcnl1	sodium leak channel, non-selective	protein-coding	0.115000	0.721393	
mm_138067.1	chr17	33936516	33936716	+	1	NA	NA	NA	3714	NM_001185182	14976	Mm.2948	NM_010385	ENSMUSG00000024309	Pfdn6	H-2Ke2|H2-Ke2|Ke-2	prefoldin subunit 6	protein-coding	0.035000	0.462687	
mm_154055.1	chr19	55103245	55103445	-	1	NA	NA	NA	-3898	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.010000	0.522388	
mm_142300.1	chr17	42692125	42692325	-	1	NA	NA	NA	59	NM_001289501	78249	Mm.66217	NM_030067	ENSMUSG00000023918	Adgrf4	4632435A09Rik|AV239010|Gpr115	adhesion G protein-coupled receptor F4	protein-coding	0.040000	0.542289	
mm_85039.1	chr9	88731639	88731839	-	1	NA	NA	NA	111	NM_007536	12047	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	0.010000	0.512438	
mm_75981.1	chr8	72284841	72285041	-	1	NA	NA	NA	-34121	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.010000	0.497512	
mm_137222.1	chr17	24171961	24172161	+	1	NA	NA	NA	-2632	NM_009729	11984	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0.010000	0.507463	
mm_90051.1	chr10	116143816	116144016	+	1	NA	NA	NA	18	NM_001161837	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	0.035000	0.552239	
mm_75606.1	chr8	61877476	61877676	-	1	NA	NA	NA	25114	NM_001081390	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.025000	0.497512	
mm_31534.1	chr4	55356417	55356617	+	1	NA	NA	NA	6475	NM_009011	19359	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	0.005000	0.477612	-65(CTCTTTAAGCCC,+,0.00)
mm_3806.1	chr1	158362179	158362379	+	1	NA	NA	NA	-25	NM_007495	11899	Mm.329586	NM_007495	ENSMUSG00000026587	Astn1	Astn|GC14|mKIAA0289	astrotactin 1	protein-coding	0.005000	0.542289	
mm_37159.1	chr4	117131396	117131596	-	1	NA	NA	NA	2467	NM_013807	12795	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo-like kinase 3	protein-coding	0.015000	0.562189	
mm_158549.1	chrX	145505069	145505269	-	1	NA	NA	NA	-17530	NM_153319	27494	Mm.100068	NM_153319	ENSMUSG00000041688	Amot	CAG-2|D0Kist1|Sii6	angiomotin	protein-coding	0.055000	0.651741	
mm_75363.1	chr8	45294688	45294888	-	1	NA	NA	NA	47	NM_008455	16621	Mm.482691	NM_008455	ENSMUSG00000109764	Klkb1	APS|Kal-3|Kal3|Klk3|PSA	kallikrein B, plasma 1	protein-coding	0.020000	0.472637	
mm_147190.1	chr18	37642081	37642281	-	1	NA	NA	NA	2023	NM_175770	24074	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TATA-box binding protein associated factor 7	protein-coding	0.000000	0.278607	46(TTCTTTTAAAAG,-,0.00),48(CTTTTAAAAGAA,+,0.00)
mm_30647.1	chr4	8838896	8839096	+	1	NA	NA	NA	148590	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.010000	0.467662	
mm_151385.1	chr19	56362723	56362923	+	1	NA	NA	NA	27215	NM_198059	18175	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	0.020000	0.512438	-79(GTGTCTAAATGC,-,0.00)
mm_134528.1	chr16	19236803	19237003	-	1	NA	NA	NA	49838	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.005000	0.587065	-81(CCCTCTAAAGAG,-,0.00)
mm_37737.1	chr4	129575295	129575495	-	1	NA	NA	NA	-1754	NM_001162433	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.005000	0.557214	
mm_157979.1	chrX	94123023	94123223	-	1	NA	NA	NA	284	NM_011768	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	0.130000	0.771144	
mm_15988.1	chr2	166937282	166937482	+	1	NA	NA	NA	27335	NR_111895	20853	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen (RNA binding protein) homolog 1 (Drosophila)	protein-coding	0.015000	0.452736	
mm_63806.1	chr7	133637454	133637654	+	1	NA	NA	NA	-121	NM_178115	214764	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	0.095000	0.626866	
mm_100036.1	chr11	114982935	114983135	+	1	NA	NA	NA	6851	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.000000	0.437811	
mm_157340.1	chrX	36902730	36902930	-	1	NA	NA	NA	69	NM_029891	77286	Mm.21649	NM_029891	ENSMUSG00000044149	Nkrf	9430034D17Rik|AW124770|C80287	NF-kappaB repressing factor	protein-coding	0.080000	0.696517	
mm_26643.1	chr3	153844153	153844353	+	1	NA	NA	NA	6	NM_025758	66772	Mm.116960	NM_025758	ENSMUSG00000038997	Asb17	4933436O18Rik	ankyrin repeat and SOCS box-containing 17	protein-coding	0.025000	0.537313	
mm_149417.1	chr19	11426333	11426533	+	1	NA	NA	NA	-17125	NM_021718	60361	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	0.000000	0.383085	
mm_118768.1	chr14	22547256	22547456	+	1	NA	NA	NA	-4558	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.000000	0.388060	
mm_39104.1	chr4	154921585	154921785	-	1	NA	NA	NA	6392	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.005000	0.517413	
mm_154254.1	chr19	60766741	60766941	-	1	NA	NA	NA	7544	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.060000	0.542289	
mm_37146.1	chr4	116994263	116994463	-	1	NA	NA	NA	50	NM_009478	22275	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	0.075000	0.567164	
mm_133705.1	chr16	93144234	93144434	+	1	NA	NA	NA	208855	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.005000	0.437811	
mm_105245.1	chr11	102349309	102349509	-	1	NA	NA	NA	15872	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.000000	0.507463	
mm_66931.1	chr7	61530084	61530284	-	1	NA	NA	NA	85143	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.010000	0.512438	
mm_136668.1	chr17	6106714	6106914	+	1	NA	NA	NA	-16	NM_001103181	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.150000	0.810945	
mm_2235.1	chr1	91044392	91044592	+	1	NA	NA	NA	-8952	NM_001310732	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.025000	0.522388	
mm_70231.1	chr7	145288921	145289121	-	1	NA	NA	NA	-5010	NR_132642	233979	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.000000	0.552239	
mm_82207.1	chr9	124103517	124103717	+	1	NA	NA	NA	1434	NM_009915	12772	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.000000	0.467662	
mm_63443.1	chr7	127483023	127483223	+	1	NA	NA	NA	-2098	NM_010183	14123	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.030000	0.651741	
mm_115185.1	chr13	108449840	108450040	+	1	NA	NA	NA	133603	NM_178683	218581	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.010000	0.527363	
mm_59746.1	chr7	28818657	28818857	+	1	NA	NA	NA	-6581	NM_016772	51798	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.035000	0.656716	
mm_42445.1	chr5	115431271	115431471	+	1	NA	NA	NA	1686	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.015000	0.502488	
mm_140420.1	chr17	87825821	87826021	+	1	NA	NA	NA	-27927	NM_199251	210741	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	0.010000	0.582090	-32(CACTATAAAAGG,-,0.00)
mm_169750.1	chr15	89355538	89355738	-	1	NA	NA	NA	21	NM_178919	105847	Mm.34511	NM_178919	ENSMUSG00000022614	Lmf2	AI451006|Tmem112b|Tmem153	lipase maturation factor 2	protein-coding	0.085000	0.651741	
mm_107602.1	chr12	49384041	49384241	+	1	NA	NA	NA	1134	NM_008241	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.075000	0.671642	
mm_103858.1	chr11	83286648	83286848	-	1	NA	NA	NA	-22	NM_001166028	237890	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0.000000	0.507463	
mm_15478.1	chr2	157560720	157560920	+	1	NA	NA	NA	742	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.020000	0.343284	
mm_145624.1	chr18	61109539	61109739	+	1	NA	NA	NA	4067	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.020000	0.601990	
mm_13420.1	chr2	104493676	104493876	+	1	NA	NA	NA	713	NM_010434	15259	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.155000	0.771144	
mm_1138.1	chr1	60703817	60704017	+	1	NA	NA	NA	-42471	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.040000	0.442786	
mm_88835.1	chr10	80826274	80826474	+	1	NA	NA	NA	-282	NM_001301034	18245	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	0.080000	0.587065	
mm_145530.1	chr18	60774545	60774745	+	1	NA	NA	NA	49	NM_020600	20044	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.075000	0.616915	
mm_113334.1	chr13	31625636	31625836	+	1	NA	NA	NA	-80	NM_010225	14238	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	0.080000	0.671642	
mm_31446.1	chr4	48585202	48585402	+	1	NA	NA	NA	109	NM_021436	230157	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0.165000	0.820896	
mm_154006.1	chr19	53038561	53038761	-	1	NA	NA	NA	-7	NM_133216	170750	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	0.080000	0.671642	
mm_169900.1	chr16	52083634	52083834	+	1	NA	NA	NA	52185	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.000000	0.502488	
mm_128720.1	chr15	64022891	64023091	-	1	NA	NA	NA	37457	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.005000	0.358209	
mm_47520.1	chr5	124111690	124111890	-	1	NA	NA	NA	-510	NM_001347478	66627	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	0.060000	0.572139	
mm_54739.1	chr6	40999389	40999589	-	1	NA	NA	NA	-10	NM_001102660	100040208	Mm.333011	NM_001102660	ENSMUSG00000096525	Gm2663	-	predicted gene 2663	protein-coding	0.000000	0.358209	-25(AGCTATAAAGGA,-,0.00)
mm_46101.1	chr5	92347416	92347616	-	1	NA	NA	NA	1373	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.010000	0.507463	
mm_49445.1	chr6	29323211	29323411	+	1	NA	NA	NA	4171	NM_001289664	330277	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	0.020000	0.472637	
mm_159757.1	chr5	88887097	88887297	+	1	NA	NA	NA	-63	NM_001197147	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.175000	0.815920	
mm_166254.1	chr5	86926414	86926614	-	1	NA	NA	NA	-11	NM_152811	71773	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0.000000	0.353234	
mm_26682.1	chr3	156561731	156561931	+	1	NA	NA	NA	37	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.155000	0.776119	
mm_85495.1	chr9	106136269	106136469	-	1	NA	NA	NA	-17755	NR_029549	387153		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	0.000000	0.432836	
mm_126008.1	chr15	76538948	76539148	+	1	NA	NA	NA	105	NM_029643	52710	Mm.28597	NM_029643	ENSMUSG00000022560	Slc52a2	2010003P03Rik|D15Ertd747e|GPCR42|Gpr172b|PAR2|mRFT1	solute carrier protein 52, member 2	protein-coding	0.060000	0.582090	
mm_116275.1	chr13	34874323	34874523	-	1	NA	NA	NA	-1071	NM_013830	19134	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	0.070000	0.641791	
mm_110405.1	chr12	45074231	45074431	-	1	NA	NA	NA	152	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.130000	0.741294	
mm_15000.1	chr2	152459314	152459514	+	1	NA	NA	NA	5206	NM_001037933	629114	Mm.389372	NM_001037933	ENSMUSG00000074681	Defb23	EG629114	defensin beta 23	protein-coding	0.025000	0.447761	-66(TGCCATTAAGGC,-,0.00)
mm_137628.1	chr17	28328510	28328710	+	1	NA	NA	NA	139	NM_011287	19896	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.150000	0.671642	
mm_87040.1	chr10	28736037	28736237	+	1	NA	NA	NA	67777	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.005000	0.348259	
mm_168026.1	chrY	90738211	90738411	+	1	NA	NA	NA	16739	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.457711	
mm_19099.1	chr2	79453838	79454038	-	1	NA	NA	NA	2698	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.040000	0.452736	
mm_68049.1	chr7	101538247	101538447	-	1	NA	NA	NA	17455	NM_007490	11871	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0.030000	0.507463	
mm_129369.1	chr15	77994977	77995177	-	1	NA	NA	NA	-24253	NM_018749	55944	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	0.060000	0.522388	
mm_166953.1	chr7	44473904	44474104	+	1	NA	NA	NA	3657	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.427861	
mm_4019.1	chr1	165689662	165689862	+	1	NA	NA	NA	18332	NM_178593	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.015000	0.487562	
mm_3509.1	chr1	150107225	150107425	+	1	NA	NA	NA	7294	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.000000	0.328358	
mm_173098.1	chrX	152524358	152524558	+	1	NA	NA	NA	-38876	NM_001199311	635396	Mm.485766	NM_001199311	ENSMUSG00000091863	Cldn34a	Gm7157	claudin 34A	protein-coding	0.030000	0.611940	
mm_34425.1	chr4	145410199	145410399	+	1	NA	NA	NA	-53911	NR_002888	545700	Mm.389595	NR_002888	ENSMUSG00000052912	Smarca5-ps	9230115A19Rik|OTTMUSG00000011029	SWI/SNF related, matrix associated, actin depenent ragulator of chromatin, subfamily a, member 5, pseudogene	pseudo	0.020000	0.462687	
mm_146650.1	chr18	11051323	11051523	-	1	NA	NA	NA	-1087	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.040000	0.492537	
mm_137143.1	chr17	23642105	23642305	+	1	NA	NA	NA	3064	NM_001033339	240047	Mm.235343	NM_001033339	ENSMUSG00000023903	Mmp25	F730048C11Rik|Leukolysin|MMP20|MT6-MMP	matrix metallopeptidase 25	protein-coding	0.020000	0.537313	
mm_105584.1	chr11	106714988	106715188	-	1	NA	NA	NA	193	NM_001305158	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.015000	0.552239	
mm_99408.1	chr11	102262146	102262346	+	1	NA	NA	NA	-6577	NM_148953	217217	Mm.216432	NM_148953	ENSMUSG00000034768	Asb16	-	ankyrin repeat and SOCS box-containing 16	protein-coding	0.030000	0.587065	
mm_97774.1	chr11	82101724	82101924	+	1	NA	NA	NA	-21	NM_011331	20293	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	0.005000	0.477612	
mm_19842.1	chr2	113216933	113217133	-	1	NA	NA	NA	50	NM_001319156	20192	Mm.436657	NM_177652	ENSMUSG00000057378	Ryr3	AI851294|C230090H21|RYR-3	ryanodine receptor 3	protein-coding	0.065000	0.671642	
mm_162879.1	chr10	99467187	99467387	-	1	NA	NA	NA	-141884	NR_038019	100504202	Mm.403801	NR_038019		Gm20110	-	predicted gene, 20110	ncRNA	0.010000	0.482587	
mm_47593.1	chr5	124862145	124862345	-	1	NA	NA	NA	-24	NM_144819	215707	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.140000	0.706468	
mm_18806.1	chr2	73911197	73911397	-	1	NA	NA	NA	29	NM_175015	228033	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	0.125000	0.691542	
mm_49375.1	chr6	24543259	24543459	+	1	NA	NA	NA	15215	NM_080847	78910	Mm.160150	NM_080847	ENSMUSG00000029685	Asb15	4930400E23Rik|Asb-15	ankyrin repeat and SOCS box-containing 15	protein-coding	0.025000	0.432836	
mm_106750.1	chr12	4082517	4082717	+	1	NA	NA	NA	43	NM_153082	217378	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	0.135000	0.731343	
mm_74373.1	chr8	128504018	128504218	+	1	NA	NA	NA	144877	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.005000	0.383085	
mm_115228.1	chr13	109902569	109902769	+	1	NA	NA	NA	-1140	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.075000	0.636816	
mm_66402.1	chr7	44374921	44375121	-	1	NA	NA	NA	9	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.020000	0.577114	
mm_56300.1	chr6	91755134	91755334	-	1	NA	NA	NA	52159	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.010000	0.338308	
mm_13001.1	chr2	90889903	90890103	+	1	NA	NA	NA	4217	NM_026161	67445	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0.155000	0.726368	
mm_90469.1	chr10	127849795	127849995	+	1	NA	NA	NA	-33	NM_147222	216453	Mm.222953	NM_147222	ENSMUSG00000054052	Rdh19	RDH-S|RDH-S2|Rdhs	retinol dehydrogenase 19	protein-coding	0.005000	0.457711	
mm_73355.1	chr8	105503100	105503300	+	1	NA	NA	NA	-6330	NM_175160	70796	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik	zinc finger, DHHC domain containing 1	protein-coding	0.005000	0.457711	-52(TCATTTAAAGGG,+,0.00)
mm_79447.1	chr9	56101438	56101638	+	1	NA	NA	NA	11562	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.000000	0.487562	
mm_42894.1	chr5	122401540	122401740	+	1	NA	NA	NA	9762	NM_019824	56378	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.025000	0.487562	
mm_57548.1	chr6	126740206	126740406	-	1	NA	NA	NA	368	NM_013568	16494	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	0.055000	0.646766	
mm_91380.1	chr10	30618323	30618523	-	1	NA	NA	NA	-57	NM_025798	66847	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	0.090000	0.661692	-99(CCCTTTTAGAGG,-,0.00),-98(CCTTTTAGAGGC,+,0.00)
mm_157507.1	chrX	48877613	48877813	-	1	NA	NA	NA	0	NM_001085499	209005	Mm.336054	NM_001085499	ENSMUSG00000079606	Gm595	-	predicted gene 595	protein-coding	0.030000	0.631841	
mm_145270.1	chr18	52768158	52768358	+	1	NA	NA	NA	114	NM_001199154	67847	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0.135000	0.791045	
mm_170018.1	chr17	18607491	18607691	-	1	NA	NA	NA	25864	NM_001104547	433070	Mm.215962	NM_001104547	ENSMUSG00000091679	Vmn2r96	EG433070	vomeronasal 2, receptor 96	protein-coding	0.025000	0.542289	
mm_58133.1	chr6	140720095	140720295	-	1	NA	NA	NA	93310	NM_001309436	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.030000	0.547264	
mm_157335.1	chrX	36492529	36492729	-	1	NA	NA	NA	89152	NR_044989	621901	Mm.491051	NR_044989		Gm6268	EG621901	predicted gene 6268	ncRNA	0.035000	0.507463	-36(TTTTTTAAAAGG,-,0.00),-35(TTTTTAAAAGGG,+,0.00)
mm_24146.1	chr3	88326071	88326271	+	1	NA	NA	NA	1148	NM_020003	56700	Mm.439922	NM_020003	ENSMUSG00000001418	Glmp	0610031J06Rik|AB027141|NCU-G1	glycosylated lysosomal membrane protein	protein-coding	0.025000	0.557214	
mm_153494.1	chr19	41331535	41331735	-	1	NA	NA	NA	53435	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.020000	0.467662	
mm_19538.1	chr2	94438067	94438267	-	1	NA	NA	NA	19	NM_007466	11800	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0.155000	0.711443	
mm_118280.1	chr13	112673157	112673357	-	1	NA	NA	NA	12491	NM_178746	268706	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0.010000	0.358209	
mm_34626.1	chr4	150569390	150569590	+	1	NA	NA	NA	82684	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.170000	0.810945	
mm_155266.1	chrX	58030911	58031111	+	1	NA	NA	NA	383	NM_009575	22773	Mm.255890	NM_009575	ENSMUSG00000067860	Zic3	Bn|Ka	zinc finger protein of the cerebellum 3	protein-coding	0.045000	0.606965	
mm_143411.1	chr17	70834397	70834597	-	1	NA	NA	NA	12280	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.055000	0.616915	
mm_119272.1	chr14	34092431	34092631	+	1	NA	NA	NA	6552	NM_013473	11752	Mm.3267	NM_013473	ENSMUSG00000021950	Anxa8	AI466995|Anx8	annexin A8	protein-coding	0.010000	0.527363	
mm_112399.1	chr13	3298770	3298970	+	1	NA	NA	NA	149395	NR_001581	73266	Mm.335891	NR_001581		Speer6-ps1	1700039A02Rik|SPEER-6	spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1	pseudo	0.025000	0.447761	
mm_99186.1	chr11	100860551	100860751	+	1	NA	NA	NA	167	NM_001164062	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.085000	0.686567	
mm_22457.1	chr3	3188003	3188203	+	1	NA	NA	NA	-319927	NM_013920	30942	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.000000	0.393035	
mm_155424.1	chrX	73491969	73492169	+	1	NA	NA	NA	8468	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.035000	0.532338	
mm_120721.1	chr14	73111675	73111875	+	1	NA	NA	NA	-30735	NM_001170694	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.010000	0.363184	-38(CTGTATTAAAGA,-,0.00)
mm_44243.1	chr5	5328063	5328263	-	1	NA	NA	NA	52088	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.000000	0.452736	77(GTTTTTATACAC,+,0.00)
mm_84653.1	chr9	71592284	71592484	-	1	NA	NA	NA	-24	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	0.065000	0.676617	
mm_108184.1	chr12	76533539	76533739	+	1	NA	NA	NA	79	NM_153804	263406	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0.115000	0.731343	
mm_14809.1	chr2	145934687	145934887	+	1	NA	NA	NA	3	NM_175280	78774	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	0.095000	0.621891	
mm_105878.1	chr11	114924723	114924923	-	1	NA	NA	NA	9563	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.010000	0.502488	
mm_75559.1	chr8	58257721	58257921	-	1	NA	NA	NA	442975	NM_001177534	100271928	Mm.484123	NM_001177534		Gm15881	OTTMUSG00000027193	predicted gene 15881	protein-coding	0.010000	0.353234	
mm_33755.1	chr4	134343105	134343305	+	1	NA	NA	NA	159	NM_001039677	230810	Mm.358876	NM_001039677	ENSMUSG00000028836	Slc30a2	ZnT-2|Znt2	solute carrier family 30 (zinc transporter), member 2	protein-coding	0.135000	0.721393	
mm_398.1	chr1	34121377	34121577	+	1	NA	NA	NA	4118	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.025000	0.542289	
mm_130467.1	chr15	98609990	98610190	-	1	NA	NA	NA	-2457	NM_007405	11512	Mm.157091	NM_007405	ENSMUSG00000022994	Adcy6	AC6|mKIAA0422	adenylate cyclase 6	protein-coding	0.070000	0.681592	
mm_172471.1	chr7	44205005	44205205	+	1	NA	NA	NA	-2328	NM_010915	18048	Mm.440886	NM_010915	ENSMUSG00000066513	Klk1b4	Ngfa|alpha-NGF|mGk-4	kallikrein 1-related pepidase b4	protein-coding	0.045000	0.517413	-22(GTGTATATAAGC,-,0.00)
mm_123025.1	chr14	55116545	55116745	-	1	NA	NA	NA	290	NM_177049	319984	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.030000	0.651741	
mm_154436.1	chrM	751	951	-	1	NA	NA	NA	NA	NA									0.015000	0.338308	
mm_58920.1	chr7	17812582	17812782	+	1	NA	NA	NA	0	NM_025957	67084	Mm.33709	NM_025957	ENSMUSG00000023185	Ceacam14	1600021E03Rik|1600025E09Rik|AV033953	carcinoembryonic antigen-related cell adhesion molecule 14	protein-coding	0.010000	0.492537	
mm_114208.1	chr13	56150281	56150481	+	1	NA	NA	NA	-14831	NM_001159513	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.005000	0.437811	
mm_26463.1	chr3	144135811	144136011	+	1	NA	NA	NA	66421	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.015000	0.542289	
mm_121547.1	chr14	122475042	122475242	+	1	NA	NA	NA	57	NR_045046	69248	Mm.235369	NR_045046	ENSMUSG00000085555	2610035F20Rik	-	RIKEN cDNA 2610035F20 gene	ncRNA	0.100000	0.696517	
mm_83751.1	chr9	51215923	51216123	-	1	NA	NA	NA	2333	NM_011136	18985	Mm.897	NM_011136	ENSMUSG00000032053	Pou2af1	BOB.1|Bob-1|Bob1|OBF-1|OBF.1|OCA-B|OCAB	POU domain, class 2, associating factor 1	protein-coding	0.015000	0.452736	
mm_54534.1	chr6	36715528	36715728	-	1	NA	NA	NA	95733	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.010000	0.353234	-18(CCATTTATACCT,+,0.00)
mm_162743.1	chr10	56389147	56389347	+	1	NA	NA	NA	11947	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.020000	0.437811	-67(GTGTTTAAAAAC,-,0.00)
mm_51252.1	chr6	71831347	71831547	+	1	NA	NA	NA	127	NM_001253688	76614	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	0.145000	0.706468	
mm_49781.1	chr6	35177306	35177506	+	1	NA	NA	NA	-210	NM_027513	70699	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	0.055000	0.522388	
mm_77549.1	chr8	123254005	123254205	-	1	NA	NA	NA	-90	NM_020497	57247	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	0.140000	0.766169	
mm_170331.1	chr18	44724477	44724677	-	1	NA	NA	NA	-62311	NM_001085374	328949	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0.030000	0.597015	
mm_24358.1	chr3	90068064	90068264	+	1	NA	NA	NA	-1856	NR_030543	100124481		NR_030543	ENSMUSG00000077996	Mir190b	Mirn190b|mir-190b	microRNA 190b	ncRNA	0.005000	0.482587	69(CCTCATAAAGGA,+,0.00)
mm_97101.1	chr11	73329638	73329838	+	1	NA	NA	NA	-3	NM_001045531	380709	Mm.340910	NM_001045531	ENSMUSG00000069825	Spata22	Gm882	spermatogenesis associated 22	protein-coding	0.070000	0.597015	
mm_77987.1	chr9	7873105	7873305	+	1	NA	NA	NA	-35	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.025000	0.502488	3(CGCCTTAAGAGG,-,0.00),4(GCCTTAAGAGGC,+,0.00)
mm_22662.1	chr3	14871670	14871870	+	1	NA	NA	NA	8232	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.015000	0.492537	
mm_131283.1	chr16	11143962	11144162	+	1	NA	NA	NA	-9530	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.160000	0.736318	
mm_87834.1	chr10	60372390	60372590	+	1	NA	NA	NA	25639	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.020000	0.383085	
mm_41327.1	chr5	90475188	90475388	+	1	NA	NA	NA	14418	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.005000	0.373134	
mm_49752.1	chr6	34746367	34746567	+	1	NA	NA	NA	-33965	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.020000	0.567164	
mm_29691.1	chr3	123112797	123112997	-	1	NA	NA	NA	-77910	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.040000	0.572139	
mm_90859.1	chr10	8861344	8861544	-	1	NA	NA	NA	24626	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.020000	0.487562	
mm_73300.1	chr8	105104745	105104945	+	1	NA	NA	NA	21090	NM_001159415	13909	Mm.482444	NM_144511	ENSMUSG00000062181	Ces3b	Ces31L|Ces3L|EG13909|ES31L|Es31|Gm4738	carboxylesterase 3B	protein-coding	0.000000	0.358209	-33(GCATATAAAAGC,-,0.00)
mm_67554.1	chr7	81688380	81688580	-	1	NA	NA	NA	4485	NM_001164087	26557	Mm.228	NM_011983	ENSMUSG00000025813	Homer2	9330120H11Rik|AW539445|CPD|Vesl-2	homer scaffolding protein 2	protein-coding	0.035000	0.567164	
mm_34797.1	chr4	154637045	154637245	+	1	NA	NA	NA	-272	NM_027504	70673	Mm.257785	NM_027504	ENSMUSG00000039410	Prdm16	5730557K01Rik|csp1|mel1	PR domain containing 16	protein-coding	0.090000	0.671642	-91(GGCCCTTTAAGA,-,0.00),-34(CACTTTAAAAGG,-,0.00),-32(CTTTAAAAGGAC,+,0.00)
mm_20914.1	chr2	150608396	150608596	-	1	NA	NA	NA	27	NM_027977	71881	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	0.105000	0.641791	
mm_11525.1	chr2	32621690	32621890	+	1	NA	NA	NA	32	NM_001198790	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.015000	0.547264	
mm_50310.1	chr6	47835692	47835892	+	1	NA	NA	NA	131	NM_027477	272347	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	0.125000	0.721393	
mm_152209.1	chr19	7802556	7802756	-	1	NA	NA	NA	11	NM_146232	236149	Mm.207060	NM_146232	ENSMUSG00000053303	Slc22a26	-	solute carrier family 22 (organic cation transporter), member 26	protein-coding	0.000000	0.343284	
mm_75351.1	chr8	43703319	43703519	-	1	NA	NA	NA	-3928	NM_001079931	384814	Mm.491652	NM_001079931		Gm5347	EG384814	predicted gene 5347	protein-coding	0.000000	0.407960	
mm_172460.1	chr7	42107157	42107357	-	1	NA	NA	NA	-9214	NM_001105057	637898	Mm.469900	NM_001105057	ENSMUSG00000090619	Vmn2r60	Casr-rs3|EG637898|Gprc2a-rs3	vomeronasal 2, receptor 60	protein-coding	0.045000	0.487562	
mm_140028.1	chr17	74016609	74016809	+	1	NA	NA	NA	31207	NM_053188	94224	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.005000	0.422886	
mm_135386.1	chr16	44262757	44262957	-	1	NA	NA	NA	69981	NM_198034	320007	Mm.242144	NM_198034	ENSMUSG00000022696	Sidt1	AW045928|B830021E24Rik	SID1 transmembrane family, member 1	protein-coding	0.025000	0.492537	
mm_4991.1	chr1	191779579	191779779	+	1	NA	NA	NA	-41794	NM_010892	18005	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0.010000	0.442786	
mm_85332.1	chr9	102354592	102354792	-	1	NA	NA	NA	1	NM_001168296	270190	Mm.22897	NM_173447	ENSMUSG00000032537	Ephb1	9330129L11|AW488255|C130099E04Rik|Cek6|ENSMUSG00000074119|Elk|Elkh|Hek6|Net	Eph receptor B1	protein-coding	0.060000	0.611940	
mm_138983.1	chr17	45487293	45487493	+	1	NA	NA	NA	-12455	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.015000	0.542289	
mm_150267.1	chr19	34217496	34217696	+	1	NA	NA	NA	25326	NM_029682	76630	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.010000	0.398010	
mm_156428.1	chrX	140979742	140979942	+	1	NA	NA	NA	-23131	NM_001164177	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	0.005000	0.452736	
mm_139238.1	chr17	47732918	47733118	+	1	NA	NA	NA	-4019	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.005000	0.547264	
mm_23686.1	chr3	68691269	68691469	+	1	NA	NA	NA	-55	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.070000	0.567164	
mm_34971.1	chr4	156009089	156009289	+	1	NA	NA	NA	-4506	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.005000	0.462687	
mm_146161.1	chr18	75047204	75047404	+	1	NA	NA	NA	28532	NM_027727	69190	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	0.050000	0.557214	
mm_102801.1	chr11	68859911	68860111	-	1	NA	NA	NA	-6880	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.015000	0.537313	
mm_24719.1	chr3	95232238	95232438	+	1	NA	NA	NA	3395	NM_001038708	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.005000	0.492537	
mm_145751.1	chr18	64554568	64554768	+	1	NA	NA	NA	-38111	NM_001142950	70223	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0.000000	0.393035	-37(AGCTCTATAGGG,-,0.00)
mm_105218.1	chr11	102185178	102185378	-	1	NA	NA	NA	-22	NM_172947	268490	Mm.259079	NM_172947	ENSMUSG00000020922	Lsm12	1110032E16Rik|1110059P07|2600001B17Rik	LSM12 homolog	protein-coding	0.135000	0.711443	
mm_19282.1	chr2	89921865	89922065	-	1	NA	NA	NA	-7846	NM_146978	258980	Mm.223370	NM_146978	ENSMUSG00000049149	Olfr1258	MOR232-3	olfactory receptor 1258	protein-coding	0.005000	0.402985	58(TCATTTAAAGAG,+,0.00)
mm_53905.1	chr6	3570477	3570677	-	1	NA	NA	NA	72184	NM_001167750	73288	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	0.000000	0.442786	
mm_60032.1	chr7	30981768	30981968	+	1	NA	NA	NA	-53	NM_001242647	76415	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.005000	0.527363	
mm_23591.1	chr3	64949136	64949336	+	1	NA	NA	NA	-104493	NR_003962	319210	Mm.246646	NM_175670	ENSMUSG00000097538	Vmn2r-ps11	4930518C23Rik	vomeronasal 2, receptor, pseudogene 11	pseudo	0.030000	0.527363	
mm_18687.1	chr2	71388999	71389199	-	1	NA	NA	NA	-161	NM_026115	107435	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0.090000	0.641791	
mm_153919.1	chr19	47272379	47272579	-	1	NA	NA	NA	1110	NR_105961	102466782		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.005000	0.393035	
mm_136931.1	chr17	13874807	13875007	+	1	NA	NA	NA	-73466	NM_001122977	635895	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.005000	0.502488	
mm_99180.1	chr11	100860172	100860372	+	1	NA	NA	NA	-212	NM_001164062	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.080000	0.721393	
mm_135804.1	chr16	57265432	57265632	-	1	NA	NA	NA	27319	NM_027651	71027	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	0.030000	0.527363	
mm_75131.1	chr8	34965495	34965695	-	1	NA	NA	NA	95	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.105000	0.736318	
mm_59836.1	chr7	29309346	29309546	+	1	NA	NA	NA	5441	NM_013874	29861	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.090000	0.681592	
mm_33823.1	chr4	135495856	135496056	+	1	NA	NA	NA	-31	NM_030189	78806	Mm.374844	NM_030189	ENSMUSG00000028801	Stpg1	4930403G18Rik|4930555I21Rik|Mapo2	sperm tail PG rich repeat containing 1	protein-coding	0.040000	0.547264	
mm_29099.1	chr3	104805369	104805569	-	1	NA	NA	NA	12836	NM_008619	17454	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0.010000	0.457711	
mm_40600.1	chr5	64264243	64264443	+	1	NA	NA	NA	33986	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.050000	0.621891	
mm_95286.1	chr11	45904116	45904316	+	1	NA	NA	NA	40719	NM_028185	72290	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	0.000000	0.348259	
mm_28702.1	chr3	95545371	95545571	-	1	NA	NA	NA	-14206	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.030000	0.517413	
mm_111707.1	chr12	103694616	103694816	-	1	NA	NA	NA	-27	NM_001164742	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding	0.010000	0.507463	
mm_163206.1	chr11	98927719	98927919	+	1	NA	NA	NA	-9877	NM_009024	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.030000	0.611940	
mm_104047.1	chr11	86357492	86357692	-	1	NA	NA	NA	-67	NM_001080931	327987	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0.135000	0.771144	
mm_2159.1	chr1	88212459	88212659	+	1	NA	NA	NA	600	NM_201645	394436	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0.030000	0.527363	
mm_140946.1	chr17	24527722	24527922	-	1	NA	NA	NA	116	NM_153792	224619	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	0.080000	0.636816	
mm_83309.1	chr9	44046647	44046847	-	1	NA	NA	NA	3363	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.045000	0.572139	
mm_66156.1	chr7	31151058	31151258	-	1	NA	NA	NA	-108	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.090000	0.651741	
mm_45080.1	chr5	43981665	43981865	-	1	NA	NA	NA	34	NM_008009	14181	Mm.46053	NM_008009	ENSMUSG00000048373	Fgfbp1	FGF-BP|FGF-BP1|FGFBP-1	fibroblast growth factor binding protein 1	protein-coding	0.015000	0.497512	
mm_30073.1	chr3	137981414	137981614	-	1	NA	NA	NA	35	NM_011932	26377	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.035000	0.606965	
mm_21118.1	chr2	153529863	153530063	-	1	NA	NA	NA	8	NM_001134300	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.165000	0.815920	
mm_13578.1	chr2	112367997	112368197	+	1	NA	NA	NA	-70	NM_026519	68032	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	0.075000	0.522388	
mm_157399.1	chrX	38420897	38421097	-	1	NA	NA	NA	35463	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.000000	0.407960	
mm_153875.1	chr19	46863547	46863747	-	1	NA	NA	NA	98704	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.040000	0.567164	
mm_112006.1	chr12	110889003	110889203	-	1	NA	NA	NA	42	NM_027223	67236	Mm.287157	NM_026048	ENSMUSG00000021276	Cinp	1810047K05Rik|2810452K22Rik	cyclin-dependent kinase 2 interacting protein	protein-coding	0.065000	0.616915	
mm_75059.1	chr8	33660550	33660750	-	1	NA	NA	NA	7412	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.015000	0.517413	
mm_156190.1	chrX	133908588	133908788	+	1	NA	NA	NA	263	NM_001083895	68792	Mm.263553	NM_026838	ENSMUSG00000031253	Srpx2	1110039C07Rik|SRP|SRPUL	sushi-repeat-containing protein, X-linked 2	protein-coding	0.015000	0.452736	
mm_43075.1	chr5	124446772	124446972	+	1	NA	NA	NA	168	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.010000	0.537313	51(TTCCTTAAATGG,-,0.00),53(CCTTAAATGGAC,+,0.00),72(TCCTTTAAGGTC,+,0.00)
mm_45301.1	chr5	65391295	65391495	-	1	NA	NA	NA	36	NM_011292	20005	Mm.300271	NM_011292	ENSMUSG00000047215	Rpl9	-	ribosomal protein L9	protein-coding	0.095000	0.606965	-86(CCGCCTTAAAGC,-,0.00)
mm_120116.1	chr14	59501795	59501995	+	1	NA	NA	NA	60914	NM_026908	69008	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding	0.015000	0.462687	
mm_126913.1	chr15	90986133	90986333	+	1	NA	NA	NA	63718	NM_001109041	16564	Mm.41379	NM_016705	ENSMUSG00000022629	Kif21a	-	kinesin family member 21A	protein-coding	0.005000	0.283582	
mm_57831.1	chr6	129464533	129464733	-	1	NA	NA	NA	8146	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.353234	
mm_136868.1	chr17	12916294	12916494	+	1	NA	NA	NA	65	NM_013686	21454	Mm.229342	NM_013686	ENSMUSG00000068039	Tcp1	AI528772|CCT|Cct1|Ccta|TRic|Tcp-1|Tp63|c-cpn|p63	t-complex protein 1	protein-coding	0.110000	0.676617	
mm_75446.1	chr8	47673378	47673578	-	1	NA	NA	NA	1681	NM_023503	69260	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.045000	0.547264	
mm_15472.1	chr2	157471184	157471384	+	1	NA	NA	NA	46991	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.005000	0.522388	
mm_47420.1	chr5	123140987	123141187	-	1	NA	NA	NA	-1106	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.030000	0.497512	
mm_63642.1	chr7	128611290	128611490	+	1	NA	NA	NA	25	NM_178641	101490	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0.055000	0.666667	
mm_77691.1	chr8	126588551	126588751	-	1	NA	NA	NA	4785	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.010000	0.402985	
mm_72380.1	chr8	81498566	81498766	+	1	NA	NA	NA	156104	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.000000	0.328358	-24(CACTTTATGAGG,-,0.00)
mm_96182.1	chr11	61656231	61656431	+	1	NA	NA	NA	3010	NM_027817	71520	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.010000	0.398010	
mm_160927.1	chr11	87422767	87422967	+	1	NA	NA	NA	-4724	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.040000	0.482587	
mm_80027.1	chr9	68653623	68653823	+	1	NA	NA	NA	-63	NM_001289917	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.085000	0.537313	
mm_172766.1	chr8	93603334	93603534	-	1	NA	NA	NA	-67727	NM_001003951	67935	Mm.65457	NM_001003951	ENSMUSG00000058019	Ces5a	1700081L16Rik|1700122C07Rik|BB081581|Ces7|Gm503|cauxin	carboxylesterase 5A	protein-coding	0.025000	0.482587	
mm_95520.1	chr11	52121830	52122030	+	1	NA	NA	NA	-4816	NR_037221	100526467		NR_037221	ENSMUSG00000092870	Mir3061	mir-3061|mmu-mir-3061	microRNA 3061	ncRNA	0.025000	0.417910	
mm_21469.1	chr2	160982604	160982804	-	1	NA	NA	NA	-70365	NM_182840	280635	Mm.330747	NM_182840	ENSMUSG00000050700	Emilin3	1110013O17Rik|EMILIN-3|EMILIN-5|EMILIN-T|Emilin5	elastin microfibril interfacer 3	protein-coding	0.010000	0.412935	
mm_171363.1	chr4	117210744	117210944	+	1	NA	NA	NA	-28220	NM_134471	73804	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.025000	0.398010	
mm_77292.1	chr8	116944227	116944427	-	1	NA	NA	NA	934	NM_177700	234776	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	0.015000	0.512438	
mm_162340.1	chr1	46892982	46893182	-	1	NA	NA	NA	-39573	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.010000	0.358209	-11(CAGCATAAAAAG,-,0.00),20(AGGTTTAAAAAG,-,0.00)
mm_67577.1	chr7	82359564	82359764	-	1	NA	NA	NA	23970	NM_001190374	269959	Mm.65306	NM_001190374	ENSMUSG00000070469	Adamtsl3	9230119C12Rik|C130057K09|mKIAA1233	ADAMTS-like 3	protein-coding	0.015000	0.482587	
mm_20937.1	chr2	150904584	150904784	-	1	NA	NA	NA	47	NM_024465	76192	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.140000	0.771144	
mm_145309.1	chr18	53862174	53862374	+	1	NA	NA	NA	161	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.085000	0.537313	
mm_65854.1	chr7	29281885	29282085	-	1	NA	NA	NA	-8	NM_011464	20733	Mm.295230	NM_011464	ENSMUSG00000074227	Spint2	AL024025|C76321|HAI-2	serine protease inhibitor, Kunitz type 2	protein-coding	0.090000	0.721393	
mm_63601.1	chr7	128145979	128146179	+	1	NA	NA	NA	16511	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.000000	0.368159	
mm_156191.1	chrX	134059010	134059210	+	1	NA	NA	NA	-66	NM_001290398	108062	Mm.67938	NM_133196	ENSMUSG00000031256	Cstf2	C630034J23Rik|Cstf64|mir-3112	cleavage stimulation factor, 3' pre-RNA subunit 2	protein-coding	0.095000	0.686567	
mm_118729.1	chr14	22240883	22241083	+	1	NA	NA	NA	221271	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.025000	0.373134	
mm_89573.1	chr10	95515075	95515275	+	1	NA	NA	NA	13	NM_080560	93765	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.105000	0.691542	
mm_1851.1	chr1	83314361	83314561	+	1	NA	NA	NA	93739	NM_172430	77629	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	0.020000	0.507463	
mm_158542.1	chrX	145348811	145349011	-	1	NA	NA	NA	-17	NM_178358	237091	Mm.135547	NM_178358	ENSMUSG00000041700	Lhfpl1	Lhfp	lipoma HMGIC fusion partner-like 1	protein-coding	0.010000	0.467662	
mm_70158.1	chr7	143547930	143548130	-	1	NA	NA	NA	798	NM_001285490	17955	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	0.020000	0.343284	
mm_58537.1	chr7	4480602	4480802	+	1	NA	NA	NA	-9818	NR_028416	320749	Mm.396688	NR_028416		D630041G03Rik	-	RIKEN cDNA D630041G03 gene	ncRNA	0.000000	0.497512	
mm_161891.1	chr18	42298791	42298991	+	1	NA	NA	NA	23538	NM_172626	225432	Mm.329400	NM_172626	ENSMUSG00000024491	Rbm27	A730010I06|AI043120|Psc1|mKIAA1311	RNA binding motif protein 27	protein-coding	0.000000	0.373134	
mm_156465.1	chrX	143518421	143518621	+	1	NA	NA	NA	-70	NM_001195048	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding	0.045000	0.606965	
mm_111790.1	chr12	104856533	104856733	-	1	NA	NA	NA	8443	NR_104436	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.015000	0.527363	
mm_152007.1	chr19	5924710	5924910	-	1	NA	NA	NA	6	NM_026772	104252	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.040000	0.636816	
mm_27667.1	chr3	65380949	65381149	-	1	NA	NA	NA	11504	NM_026155	67437	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.010000	0.398010	
mm_15258.1	chr2	154892923	154893123	+	1	NA	NA	NA	-117	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.085000	0.532338	-39(GGCTAGAAAAGA,-,0.00)
mm_33863.1	chr4	135929666	135929866	+	1	NA	NA	NA	9040	NM_024243	71665	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	0.005000	0.398010	
mm_104215.1	chr11	88343316	88343516	-	1	NA	NA	NA	-9357	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	0.010000	0.353234	-95(TTTTTTAAAAGG,-,0.00)
mm_68121.1	chr7	102116669	102116869	-	1	NA	NA	NA	-56	NM_001081424	504186	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	0.005000	0.512438	
mm_81156.1	chr9	107295805	107296005	+	1	NA	NA	NA	-754	NM_001317354	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.015000	0.492537	
mm_104088.1	chr11	86624314	86624514	-	1	NA	NA	NA	-31657	NR_106195	102465902		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	0.015000	0.457711	
mm_168554.1	chr11	65158415	65158615	-	1	NA	NA	NA	4446	NM_001099288	216831	Mm.134338	NM_175003	ENSMUSG00000033389	Arhgap44	6330543G20|AI840762|AU040829|AW493732|Rich2	Rho GTPase activating protein 44	protein-coding	0.030000	0.522388	
mm_75792.1	chr8	70095709	70095909	-	1	NA	NA	NA	6777	NR_106033	102465646		NR_106033	ENSMUSG00000099042	Mir7066	Gm27290|mmu-mir-7066	microRNA 7066	ncRNA	0.005000	0.497512	
mm_86146.1	chr9	117252018	117252218	-	1	NA	NA	NA	365	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.030000	0.512438	-85(CCTTTACAAGCG,+,0.00)
mm_43506.1	chr5	136987377	136987577	+	1	NA	NA	NA	458	NM_011962	26433	Mm.251003	NM_011962	ENSMUSG00000004846	Plod3	AI414586|LH3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	protein-coding	0.085000	0.671642	
mm_63169.1	chr7	124186636	124186836	+	1	NA	NA	NA	203555	NM_001252072	628779	Mm.40210	NM_001252072	ENSMUSG00000078591	Hs3st4	EG628779|Gm6915	heparan sulfate (glucosamine) 3-O-sulfotransferase 4	protein-coding	0.025000	0.487562	
mm_72295.1	chr8	75219191	75219391	+	1	NA	NA	NA	5347	NM_029182	75141	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.005000	0.512438	
mm_11396.1	chr2	31470144	31470344	+	1	NA	NA	NA	-26	NM_007494	11898	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.085000	0.736318	
mm_10316.1	chr2	11175768	11175968	+	1	NA	NA	NA	3486	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.020000	0.477612	39(AACTTTAAAAAG,-,0.00),41(CTTTAAAAAGCT,+,0.00)
mm_42537.1	chr5	115908418	115908618	+	1	NA	NA	NA	62862	NM_007708	12704	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0.035000	0.567164	
mm_123355.1	chr14	63142537	63142737	-	1	NA	NA	NA	20175	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.025000	0.567164	
mm_169003.1	chr13	102421707	102421907	+	1	NA	NA	NA	-271751	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.055000	0.641791	
mm_168140.1	chr10	31672497	31672697	-	1	NA	NA	NA	-62872	NM_001146349	268291	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.030000	0.557214	
mm_18473.1	chr2	62411907	62412107	-	1	NA	NA	NA	224	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.060000	0.572139	
mm_28003.1	chr3	83010030	83010230	-	1	NA	NA	NA	2406	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.010000	0.442786	
mm_155066.1	chrX	42502524	42502724	+	1	NA	NA	NA	59	NM_001313689	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	0.005000	0.482587	
mm_70824.1	chr8	23139063	23139263	+	1	NA	NA	NA	133	NM_001310437	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.035000	0.562189	
mm_30093.1	chr3	138239536	138239736	-	1	NA	NA	NA	27	NR_045760	68369	Mm.441136	NR_045760	ENSMUSG00000099146	0610031O16Rik	-	RIKEN cDNA 0610031O16 gene	ncRNA	0.025000	0.462687	
mm_126110.1	chr15	78253127	78253327	+	1	NA	NA	NA	8416	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.010000	0.587065	
mm_116695.1	chr13	49652634	49652834	-	1	NA	NA	NA	-3	NM_025495	66336	Mm.440323	NM_025495	ENSMUSG00000021391	Cenpp	1700022C02Rik|4921518G09Rik	centromere protein P	protein-coding	0.110000	0.681592	
mm_19045.1	chr2	77170455	77170655	-	1	NA	NA	NA	80	NM_001025576	545428	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI|ENSMUSG00000075261	coiled-coil domain containing 141	protein-coding	0.030000	0.527363	
mm_2543.1	chr1	107511396	107511596	+	1	NA	NA	NA	-14	NM_011111	18788	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0.020000	0.447761	
mm_120119.1	chr14	59597948	59598148	+	1	NA	NA	NA	-89	NM_001168536	71891	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0.055000	0.547264	
mm_119255.1	chr14	33934773	33934973	+	1	NA	NA	NA	-6166	NM_019506	12165	Mm.422844	NM_019506	ENSMUSG00000072625	Gdf2	Bmp9	growth differentiation factor 2	protein-coding	0.015000	0.447761	12(CAGTTTAAATGC,-,0.00),25(GTTTTAAAACCC,+,0.00)
mm_135450.1	chr16	45708095	45708295	-	1	NA	NA	NA	-14537	NM_172455	208171	Mm.186306	NM_172455	ENSMUSG00000033177	Tmprss7	B230219I23Rik|Gm1748	transmembrane serine protease 7	protein-coding	0.000000	0.427861	
mm_126251.1	chr15	79029218	79029418	+	1	NA	NA	NA	1106	NM_008197	14958	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	0.010000	0.472637	
mm_53833.1	chr6	148109390	148109590	+	1	NA	NA	NA	62074	NM_178797	330450	Mm.447274	NM_178797	ENSMUSG00000030303	Far2	A230046P18|AW048109|BC055759|Mlstd1	fatty acyl CoA reductase 2	protein-coding	0.020000	0.507463	
mm_49803.1	chr6	36364905	36365105	+	1	NA	NA	NA	-23079	NM_203491	243764	Mm.448632	NM_203491	ENSMUSG00000045613	Chrm2	AChR-M2|Chrm-2|M2	cholinergic receptor, muscarinic 2, cardiac	protein-coding	0.005000	0.308458	
mm_152055.1	chr19	6296562	6296762	-	1	NA	NA	NA	-9795	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.005000	0.527363	
mm_80691.1	chr9	91378541	91378741	+	1	NA	NA	NA	9669	NM_009576	22774	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.070000	0.636816	
mm_163253.1	chr11	109230869	109231069	-	1	NA	NA	NA	67212	NM_001165934	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0.005000	0.422886	
mm_168809.1	chr12	20990398	20990598	+	1	NA	NA	NA	-121258	NM_001004364	211914	Mm.358946	NM_001004364	ENSMUSG00000052632	Asap2	6530401G17Rik|Ddef2|Gm1523|Gm592|PAG3|PAP	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding	0.120000	0.756219	
mm_37203.1	chr4	117871932	117872132	-	1	NA	NA	NA	438	NM_001034876	381546	Mm.440118	NM_001034876	ENSMUSG00000078588	Ccdc24	Gm1028	coiled-coil domain containing 24	protein-coding	0.020000	0.582090	
mm_147757.1	chr18	61224250	61224450	-	1	NA	NA	NA	3851	NM_146086	225600	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	0.005000	0.482587	
mm_90269.1	chr10	122679143	122679343	+	1	NA	NA	NA	-72	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.110000	0.686567	
mm_134485.1	chr16	18626576	18626776	-	1	NA	NA	NA	3262	NM_213614	18951	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.170000	0.766169	
mm_43477.1	chr5	136695143	136695343	+	1	NA	NA	NA	1066	NM_001085387	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.020000	0.606965	
mm_118082.1	chr13	103335848	103336048	-	1	NA	NA	NA	-1456	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.015000	0.512438	89(TAGCATAAAAGG,-,0.00)
mm_100288.1	chr11	117813356	117813556	+	1	NA	NA	NA	3789	NM_009304	20973	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0.020000	0.606965	
mm_72758.1	chr8	85492545	85492745	+	1	NA	NA	NA	28	NM_173866	108682	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.105000	0.686567	
mm_163795.1	chr14	15130485	15130685	-	1	NA	NA	NA	308402	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding	0.000000	0.398010	
mm_80299.1	chr9	73125292	73125492	+	1	NA	NA	NA	11923	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0.005000	0.477612	
mm_47363.1	chr5	122900222	122900422	-	1	NA	NA	NA	28	NM_013910	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.155000	0.791045	
mm_35048.1	chr4	4793229	4793429	-	1	NA	NA	NA	-23	NM_177730	242291	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	0.080000	0.701493	
mm_100970.1	chr11	6717061	6717261	-	1	NA	NA	NA	2876	NR_046025	626419	Mm.390334	NR_046025	ENSMUSG00000086808	Gm11981	OTTMUSG00000005129	predicted gene 11981	ncRNA	0.010000	0.452736	
mm_102023.1	chr11	51650659	51650859	-	1	NA	NA	NA	-195	NR_027958	97775	Mm.220299	NM_175289	ENSMUSG00000052563	D930048N14Rik	AI315703|R75254	RIKEN cDNA D930048N14 gene	ncRNA	0.115000	0.681592	
mm_39440.1	chr5	16870131	16870331	+	1	NA	NA	NA	316330	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.010000	0.393035	
mm_110948.1	chr12	76643727	76643927	-	1	NA	NA	NA	66720	NM_013675	20741	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0.020000	0.492537	
mm_79149.1	chr9	47721923	47722123	+	1	NA	NA	NA	96185	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.015000	0.447761	
mm_101308.1	chr11	22610310	22610510	-	1	NA	NA	NA	98127	NM_153596	103765	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.015000	0.497512	
mm_20477.1	chr2	129593845	129594045	-	1	NA	NA	NA	776	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.030000	0.537313	
mm_150013.1	chr19	29367052	29367252	+	1	NA	NA	NA	-286	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.025000	0.437811	
mm_146811.1	chr18	20746312	20746512	-	1	NA	NA	NA	-8	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.095000	0.711443	
mm_47775.1	chr5	131616654	131616854	-	1	NA	NA	NA	-263515	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.050000	0.621891	-28(GCCTATATACCC,+,0.00)
mm_122848.1	chr14	54752088	54752288	-	1	NA	NA	NA	29698	NM_016972	50934	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	0.005000	0.492537	
mm_106459.1	chr11	120041659	120041859	-	1	NA	NA	NA	22	NM_001198787	11302	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0.020000	0.616915	
mm_93106.1	chr10	91082467	91082667	-	1	NA	NA	NA	176	NM_001042558	11783	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	0.105000	0.696517	
mm_49787.1	chr6	35178009	35178209	+	1	NA	NA	NA	493	NM_027513	70699	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	0.070000	0.661692	
mm_45658.1	chr5	77114816	77115016	-	1	NA	NA	NA	207	NM_175606	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.055000	0.582090	4(GGCTATTTAAGC,-,0.00)
mm_12998.1	chr2	90889799	90889999	+	1	NA	NA	NA	4113	NM_026161	67445	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0.210000	0.810945	
mm_61845.1	chr7	88290860	88291060	+	1	NA	NA	NA	12875	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.005000	0.393035	4(GCCCTTAAAGAG,-,0.00),6(CCTTAAAGAGTT,+,0.00)
mm_35528.1	chr4	41275254	41275454	-	1	NA	NA	NA	-219	NM_026872	68926	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0.075000	0.537313	18(GCTTTAATAGTG,+,0.00)
mm_112261.1	chr12	113964770	113964970	-	1	NA	NA	NA	420962	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.010000	0.467662	
mm_6020.1	chr1	59094817	59095017	-	1	NA	NA	NA	-17	NM_175200	73463	Mm.252811	NM_175200	ENSMUSG00000072295	Als2cr11	1700052H20Rik|4930408G06Rik	amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 (human)	protein-coding	0.070000	0.597015	
mm_33218.1	chr4	126665127	126665327	+	1	NA	NA	NA	-12416	NM_011970	26445	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	0.050000	0.497512	
mm_70806.1	chr8	22974828	22975028	+	1	NA	NA	NA	92	NM_001277280	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.195000	0.875622	
mm_33713.1	chr4	133816382	133816582	+	1	NA	NA	NA	58249	NM_001285506	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.020000	0.482587	
mm_131305.1	chr16	11447191	11447391	+	1	NA	NA	NA	41643	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.015000	0.542289	
mm_81601.1	chr9	110547032	110547232	+	1	NA	NA	NA	14535	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.005000	0.253731	67(TCTTTTATAGGC,+,0.00)
mm_44947.1	chr5	36581701	36581901	-	1	NA	NA	NA	596	NM_133910	100855	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.095000	0.731343	
mm_100466.1	chr11	119916220	119916420	+	1	NA	NA	NA	2510	NM_001085498	208092	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.015000	0.601990	
mm_94619.1	chr11	16759498	16759698	+	1	NA	NA	NA	7395	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.010000	0.422886	
mm_99017.1	chr11	98903108	98903308	+	1	NA	NA	NA	-4681	NM_001025779	23834	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0.000000	0.457711	
mm_156611.1	chrX	153498069	153498269	+	1	NA	NA	NA	-63	NM_018798	54609	Mm.430772	NM_018798	ENSMUSG00000050148	Ubqln2	Chap1|Dsk2|HRIHFB2157|Plic-2|Plic2	ubiquilin 2	protein-coding	0.150000	0.791045	
mm_172311.1	chr7	105374301	105374501	-	1	NA	NA	NA	-637	NM_001195727	100503879	Mm.380109	NM_001195727	ENSMUSG00000078611	Gm5901	EG545989	predicted gene 5901	protein-coding	0.000000	0.432836	
mm_30871.1	chr4	32165056	32165256	+	1	NA	NA	NA	201049	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.005000	0.472637	-32(GACTATAAGAAG,-,0.00)
mm_29523.1	chr3	116594773	116594973	-	1	NA	NA	NA	-85	NM_001289568	72776	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	0.070000	0.606965	
mm_96268.1	chr11	62760515	62760715	+	1	NA	NA	NA	28802	NM_138949	192651	Mm.168530	NM_138949	ENSMUSG00000047342	Zfp286	BC027023	zinc finger protein 286	protein-coding	0.005000	0.288557	
mm_156933.1	chrX	169685167	169685367	+	1	NA	NA	NA	68	NM_001290512	17318	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	0.030000	0.577114	
mm_115679.1	chr13	13359558	13359758	-	1	NA	NA	NA	33966	NM_031999	83924	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	0.030000	0.492537	
mm_143714.1	chr17	80728051	80728251	-	1	NA	NA	NA	-126	NM_001290345	225028	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.160000	0.810945	
mm_16548.1	chr2	181763225	181763425	+	1	NA	NA	NA	-7	NM_001171615	17932	Mm.458718	NM_008665	ENSMUSG00000010505	Myt1	Nzf2|Nzf2a|Nzf2b|Nztf2	myelin transcription factor 1	protein-coding	0.020000	0.532338	
mm_65514.1	chr7	25754858	25755058	-	1	NA	NA	NA	-238	NM_144922	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.080000	0.572139	
mm_171323.1	chr3	96373921	96374121	+	1	NA	NA	NA	40812	NR_001579	21748		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	0.055000	0.601990	
mm_9106.1	chr1	170110412	170110612	-	1	NA	NA	NA	-21568	NM_022563	18214	Mm.229249	NM_022563	ENSMUSG00000026674	Ddr2	AW495251|Ntrkr3|tyro10	discoidin domain receptor family, member 2	protein-coding	0.030000	0.522388	
mm_2281.1	chr1	91320125	91320325	+	1	NA	NA	NA	-1850	NM_001033292	227357	Mm.318167	NM_001033292	ENSMUSG00000049515	Espnl	Gm556	espin-like	protein-coding	0.050000	0.592040	
mm_51511.1	chr6	83137284	83137484	+	1	NA	NA	NA	300	NM_009106	20166	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0.030000	0.666667	
mm_125861.1	chr15	75216584	75216784	+	1	NA	NA	NA	-51737	NM_008530	17071	Mm.377095	NM_008530	ENSMUSG00000022583	Ly6f	-	lymphocyte antigen 6 complex, locus F	protein-coding	0.000000	0.482587	
mm_132482.1	chr16	36875135	36875335	+	1	NA	NA	NA	-409	NM_134111	106389	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0.125000	0.731343	
mm_12421.1	chr2	70562078	70562278	+	1	NA	NA	NA	49	NM_008077	14415	Mm.272120	NM_008077	ENSMUSG00000070880	Gad1	EP10|Gad-1	glutamate decarboxylase 1	protein-coding	0.080000	0.716418	
mm_88876.1	chr10	81102586	81102786	+	1	NA	NA	NA	-1930	NR_049187	100885826		NR_049187	ENSMUSG00000093498	Mir5615-2	Gm23367|mir-5615-2|mmu-mir-5615-2	microRNA 5615-2	ncRNA	0.010000	0.542289	-36(CACTATAAATGG,-,0.00)
mm_141325.1	chr17	28441625	28441825	-	1	NA	NA	NA	44424	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.010000	0.497512	
mm_168504.1	chr1	153486642	153486842	-	1	NA	NA	NA	918	NM_007842	13211	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.025000	0.407960	
mm_120866.1	chr14	75229761	75229961	+	1	NA	NA	NA	-12426	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.000000	0.457711	-86(CCTTAAATAAAC,+,0.00)
mm_141145.1	chr17	26505861	26506061	-	1	NA	NA	NA	2511	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.025000	0.412935	
mm_6605.1	chr1	75366729	75366929	-	1	NA	NA	NA	6537	NM_010043	13346	Mm.6712	NM_010043	ENSMUSG00000026208	Des	-	desmin	protein-coding	0.020000	0.557214	
mm_171561.1	chr4	147230206	147230406	+	1	NA	NA	NA	54440	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.015000	0.507463	
mm_34080.1	chr4	138706788	138706988	+	1	NA	NA	NA	17968	NM_001285930	212190	Mm.292226	NM_178671	ENSMUSG00000043621	Ubxn10	5730509E04Rik|A830047D02|Ubxd3	UBX domain protein 10	protein-coding	0.030000	0.592040	
mm_111508.1	chr12	99563810	99564010	-	1	NA	NA	NA	69	NR_136760	102639404	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.055000	0.562189	
mm_64657.1	chr7	4151770	4151970	-	1	NA	NA	NA	-1998	NM_175529	243813	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.010000	0.492537	
mm_131498.1	chr16	17336377	17336577	+	1	NA	NA	NA	5106	NM_001331047	15160	Mm.6609	NM_008223	ENSMUSG00000022766	Serpind1	AA985900|AI303446|HC-II|HCII|Hcf2	serine (or cysteine) peptidase inhibitor, clade D, member 1	protein-coding	0.025000	0.492537	
mm_146209.1	chr18	76860408	76860608	+	1	NA	NA	NA	4103	NM_001109743	664805	Mm.329543	NM_001109743	ENSMUSG00000091519	Skor2	Corl2|EG664805|Fussel18|Gm7348	SKI family transcriptional corepressor 2	protein-coding	0.100000	0.701493	
mm_83524.1	chr9	46229975	46230175	-	1	NA	NA	NA	1445	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.075000	0.616915	
mm_101841.1	chr11	48799882	48800082	-	1	NA	NA	NA	-378	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.055000	0.502488	
mm_8862.1	chr1	162740412	162740612	-	1	NA	NA	NA	44	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.105000	0.636816	
mm_75295.1	chr8	41054738	41054938	-	1	NA	NA	NA	-42	NM_001005864	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.035000	0.542289	
mm_168623.1	chr1	179925347	179925547	-	1	NA	NA	NA	-35313	NM_001346804	226751	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	0.045000	0.482587	
mm_128623.1	chr15	59016126	59016326	-	1	NA	NA	NA	65800	NM_001146180	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.035000	0.427861	
mm_124804.1	chr15	8569872	8570072	+	1	NA	NA	NA	-125509	NM_201232	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.020000	0.482587	-56(CACTATATAAAC,-,0.00)
mm_103869.1	chr11	83525725	83525925	-	1	NA	NA	NA	-3726	NM_001045543	629303	Mm.390417	NM_001045543	ENSMUSG00000018925	Heatr9	Gm11435|OTTMUSG00000000990	HEAT repeat containing 9	protein-coding	0.010000	0.492537	
mm_30003.1	chr3	135608156	135608356	-	1	NA	NA	NA	83291	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.065000	0.601990	
mm_40214.1	chr5	37050781	37050981	+	1	NA	NA	NA	24	NM_178394	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0.010000	0.592040	
mm_48838.1	chr5	149244685	149244885	-	1	NA	NA	NA	-20219	NM_001308462	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.025000	0.487562	
mm_10732.1	chr2	22928460	22928660	+	1	NA	NA	NA	33038	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.005000	0.422886	-15(GAGCTTTAAAGG,-,0.00),-14(AGCTTTAAAGGC,-,0.00),-13(GCTTTAAAGGCT,+,0.00)
mm_24277.1	chr3	89215076	89215276	+	1	NA	NA	NA	-11	NM_013691	21827	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	0.040000	0.646766	
mm_28786.1	chr3	95995610	95995810	-	1	NA	NA	NA	129	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.120000	0.736318	
mm_117858.1	chr13	98815169	98815369	-	1	NA	NA	NA	180	NM_172591	218503	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.160000	0.751244	
mm_137632.1	chr17	28329242	28329442	+	1	NA	NA	NA	871	NM_011287	19896	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.050000	0.611940	
mm_69206.1	chr7	127421692	127421892	-	1	NA	NA	NA	242	NM_026999	69234	Mm.20301	NM_026999	ENSMUSG00000045251	Zfp688	2810407K09Rik|AI326029	zinc finger protein 688	protein-coding	0.075000	0.651741	
mm_3938.1	chr1	163779484	163779684	+	1	NA	NA	NA	1	NM_010629	16579	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	0.070000	0.656716	
mm_40604.1	chr5	64379125	64379325	+	1	NA	NA	NA	88717	NR_040681	69999	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.020000	0.532338	-38(CACCATATAAAG,-,0.00),-36(CCATATAAAGAG,+,0.00)
mm_86562.1	chr10	11281457	11281657	+	1	NA	NA	NA	-30	NM_001168297	71865	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0.170000	0.820896	
mm_2699.1	chr1	127797425	127797625	+	1	NA	NA	NA	23361	NM_028399	72949	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	0.005000	0.293532	
mm_108024.1	chr12	73636594	73636794	+	1	NA	NA	NA	51898	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.000000	0.383085	
mm_38113.1	chr4	134535191	134535391	-	1	NA	NA	NA	-23	NM_001256112	76824	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	0.090000	0.701493	
mm_136478.1	chr16	95990809	95991009	-	1	NA	NA	NA	-6	NM_019537	56088	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	0.095000	0.706468	
mm_8782.1	chr1	161243527	161243727	-	1	NA	NA	NA	7583	NR_130150	11758	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	0.010000	0.502488	
mm_56472.1	chr6	99028345	99028545	-	1	NA	NA	NA	-147	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.135000	0.731343	
mm_14917.1	chr2	150909504	150909704	+	1	NA	NA	NA	10	NM_001163476	69270	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0.060000	0.601990	
mm_76331.1	chr8	84706220	84706420	-	1	NA	NA	NA	4863	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.030000	0.393035	
mm_72204.1	chr8	72573588	72573788	+	1	NA	NA	NA	1585	NM_144534	74166	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	0.030000	0.457711	
mm_23145.1	chr3	39011691	39011891	+	1	NA	NA	NA	124851	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.015000	0.273632	
mm_118905.1	chr14	26655921	26656121	+	1	NA	NA	NA	13587	NR_106132	102465773		NR_106132	ENSMUSG00000098751	Mir7672	Gm27314|mmu-mir-7672	microRNA 7672	ncRNA	0.010000	0.368159	40(GGTTATTAAAGG,-,0.00)
mm_146192.1	chr18	76165023	76165223	+	1	NA	NA	NA	-5429	NR_105776	102465184		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	0.020000	0.562189	-93(GCTTTTATGATC,+,0.00)
mm_114553.1	chr13	74062309	74062509	+	1	NA	NA	NA	-124	NM_028959	74470	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	0.045000	0.606965	
mm_110880.1	chr12	74889887	74890087	-	1	NA	NA	NA	287345	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0.000000	0.283582	
mm_77702.1	chr8	126590657	126590857	-	1	NA	NA	NA	2679	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.005000	0.298507	0(GTTTTTAAAGAG,+,0.00)
mm_135350.1	chr16	43664284	43664484	-	1	NA	NA	NA	-200	NM_001146325	100043314	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	ENSMUSG00000071552|Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0.020000	0.388060	
mm_66263.1	chr7	35754261	35754461	-	1	NA	NA	NA	93	NM_178704	233115	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0.085000	0.711443	
mm_139356.1	chr17	50517983	50518183	+	1	NA	NA	NA	8536	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.010000	0.393035	-33(CAGTATAAAAGA,-,0.00)
mm_85096.1	chr9	93005644	93005844	-	1	NA	NA	NA	-11	NR_040756	78349	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA	0.005000	0.457711	
mm_139910.1	chr17	70900899	70901099	+	1	NA	NA	NA	-47467	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.025000	0.537313	
mm_69014.1	chr7	126704691	126704891	-	1	NA	NA	NA	25	NM_009898	12721	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.060000	0.661692	
mm_112964.1	chr13	21181064	21181264	+	1	NA	NA	NA	1233	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.070000	0.636816	
mm_107156.1	chr12	24572315	24572515	+	1	NA	NA	NA	128	NM_001161406	195733	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead-like 1 (Drosophila)	protein-coding	0.155000	0.766169	
mm_159020.1	chr1	171411529	171411729	+	1	NA	NA	NA	-52	NM_009480	22278	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	0.095000	0.716418	
mm_31095.1	chr4	41755449	41755649	+	1	NA	NA	NA	321	NM_016658	14430	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	0.080000	0.641791	
mm_33449.1	chr4	130663704	130663904	+	1	NA	NA	NA	445	NM_001159605	80912	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0.080000	0.587065	
mm_103372.1	chr11	75318806	75319006	-	1	NA	NA	NA	29477	NM_001164223	68275	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0.020000	0.442786	
mm_134509.1	chr16	19067007	19067207	-	1	NA	NA	NA	190357	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.005000	0.487562	
mm_143580.1	chr17	74323771	74323971	-	1	NA	NA	NA	73	NM_024428	66310	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0.005000	0.348259	-12(CCCTTTCTAGTC,+,0.00)
mm_97982.1	chr11	83885591	83885791	+	1	NA	NA	NA	32731	NM_001291269	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.015000	0.507463	
mm_19007.1	chr2	76890065	76890265	-	1	NA	NA	NA	92382	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.030000	0.437811	
mm_97824.1	chr11	82964493	82964693	+	1	NA	NA	NA	-3912	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.005000	0.363184	
mm_165406.1	chr2	143079917	143080117	-	1	NA	NA	NA	1525	NM_020595	57329	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	0.015000	0.467662	
mm_108108.1	chr12	75308325	75308525	+	1	NA	NA	NA	112	NM_023275	80837	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	0.035000	0.542289	-33(CCGTTTAAAAGC,-,0.00)
mm_18373.1	chr2	59948136	59948336	-	1	NA	NA	NA	-65630	NM_028118	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.030000	0.477612	
mm_4576.1	chr1	177840281	177840481	+	1	NA	NA	NA	-43872	NM_007422	11566	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.005000	0.432836	
mm_114663.1	chr13	78198925	78199125	+	1	NA	NA	NA	-152	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.100000	0.711443	
mm_131696.1	chr16	20694923	20695123	+	1	NA	NA	NA	-34	NM_133778	78408	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0.005000	0.512438	
mm_122880.1	chr14	54926657	54926857	-	1	NA	NA	NA	31	NM_010112	13644	Mm.236438	NM_010112	ENSMUSG00000022203	Efs	-	embryonal Fyn-associated substrate	protein-coding	0.100000	0.726368	
mm_160317.1	chr7	142303440	142303640	+	1	NA	NA	NA	38	NM_015809	50775	Mm.389990	NM_015809	ENSMUSG00000045236	Krtap5-4	-	keratin associated protein 5-4	protein-coding	0.000000	0.527363	
mm_18168.1	chr2	45103449	45103649	-	1	NA	NA	NA	6728	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.020000	0.353234	
mm_116940.1	chr13	56088567	56088767	-	1	NA	NA	NA	46883	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.025000	0.398010	
mm_164382.1	chr16	31297468	31297668	-	1	NA	NA	NA	17240	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.025000	0.517413	
mm_138956.1	chr17	44188529	44188729	+	1	NA	NA	NA	57	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	0.070000	0.606965	
mm_23968.1	chr3	84977854	84978054	+	1	NA	NA	NA	25743	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.020000	0.402985	
mm_151779.1	chr19	5364769	5364969	-	1	NA	NA	NA	1494	NM_001038231	23825	Mm.358649	NM_011793	ENSMUSG00000024844	Banf1	Baf|Bcrp1|L2bp1/Baf	barrier to autointegration factor 1	protein-coding	0.015000	0.552239	-65(CTCCATAAAGGA,-,0.00)
mm_42040.1	chr5	108404876	108405076	+	1	NA	NA	NA	16603	NM_008806	18587	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0.005000	0.447761	
mm_122823.1	chr14	54654121	54654321	-	1	NA	NA	NA	-520	NM_001085472	56215	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	0.010000	0.492537	
mm_88842.1	chr10	80874144	80874344	+	1	NA	NA	NA	-5572	NM_001081688	432478	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	0.030000	0.577114	
mm_75164.1	chr8	36612690	36612890	-	1	NA	NA	NA	1153	NM_015802	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.045000	0.537313	
mm_81957.1	chr9	120657916	120658116	+	1	NA	NA	NA	80685	NR_073359	76100	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.000000	0.542289	
mm_86972.1	chr10	25398499	25398699	+	1	NA	NA	NA	-9769	NM_013511	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.025000	0.467662	
mm_49658.1	chr6	31124105	31124305	+	1	NA	NA	NA	-61112	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.015000	0.497512	
mm_85660.1	chr9	107668910	107669110	-	1	NA	NA	NA	-42	NM_001199218	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.000000	0.562189	
mm_64220.1	chr7	141562135	141562335	+	1	NA	NA	NA	55	NM_007459	11772	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0.195000	0.781095	
mm_50574.1	chr6	49051791	49051991	+	1	NA	NA	NA	15373	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.020000	0.592040	
mm_165268.1	chr2	74886929	74887129	-	1	NA	NA	NA	61217	NM_016804	53375	Mm.292613	NM_016804	ENSMUSG00000027099	Mtx2	1500012G02Rik	metaxin 2	protein-coding	0.055000	0.522388	-73(GTGTTTATAAAG,-,0.00),-71(GTTTATAAAGCG,+,0.00)
mm_120501.1	chr14	66209815	66210015	+	1	NA	NA	NA	3637	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.010000	0.487562	
mm_149734.1	chr19	21992485	21992685	+	1	NA	NA	NA	-146532	NM_001035239	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.025000	0.547264	
mm_133520.1	chr16	90830315	90830515	+	1	NA	NA	NA	-444	NR_133572	70967	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	0.050000	0.527363	
mm_12344.1	chr2	69745929	69746129	+	1	NA	NA	NA	22941	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.015000	0.353234	-49(CTCTTTATAAAA,-,0.00)
mm_12766.1	chr2	79279005	79279205	+	1	NA	NA	NA	23679	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.015000	0.398010	
mm_142362.1	chr17	43816350	43816550	-	1	NA	NA	NA	12447	NM_001286653	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.015000	0.472637	
mm_9466.1	chr1	173333316	173333516	-	1	NA	NA	NA	87	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	0.010000	0.537313	
mm_30414.1	chr3	152265641	152265841	-	1	NA	NA	NA	579	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.150000	0.800995	
mm_105852.1	chr11	113710011	113710211	-	1	NA	NA	NA	-94	NM_029794	52670	Mm.229207	NM_026682	ENSMUSG00000018727	Cpsf4l	0610010C04Rik|1500000C01Rik|D11Ertd636e	cleavage and polyadenylation specific factor 4-like	protein-coding	0.030000	0.572139	60(GTCTAGAAAAGA,-,0.00)
mm_44916.1	chr5	35722511	35722711	-	1	NA	NA	NA	6665	NM_194344	231147	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.005000	0.492537	
mm_32546.1	chr4	109372235	109372435	+	1	NA	NA	NA	29279	NM_001159964	13858	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0.000000	0.323383	
mm_4525.1	chr1	175632008	175632208	+	1	NA	NA	NA	-85	NM_133809	98256	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	0.025000	0.447761	
mm_74672.1	chr8	13889892	13890092	-	1	NA	NA	NA	279	NM_025556	66423	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	0.115000	0.731343	
mm_101546.1	chr11	33544204	33544404	-	1	NA	NA	NA	-30558	NM_023146	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.035000	0.522388	
mm_99316.1	chr11	101442273	101442473	+	1	NA	NA	NA	128	NM_011289	19942	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	0.050000	0.606965	
mm_39610.1	chr5	24159747	24159947	+	1	NA	NA	NA	-5116	NM_153092	231042	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	0.010000	0.338308	
mm_76711.1	chr8	94601630	94601830	-	1	NA	NA	NA	-4	NM_028221	102122	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	0.070000	0.567164	
mm_26545.1	chr3	146182893	146183093	+	1	NA	NA	NA	32819	NM_001005846	68279	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.010000	0.412935	
mm_106800.1	chr12	4917307	4917507	+	1	NA	NA	NA	54	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.125000	0.716418	
mm_5033.1	chr1	193301941	193302141	+	1	NA	NA	NA	47	NM_008484	16780	Mm.435441	NM_008484	ENSMUSG00000026639	Lamb3	-	laminin, beta 3	protein-coding	0.015000	0.611940	
mm_65151.1	chr7	19604368	19604568	-	1	NA	NA	NA	18	NR_125832	53609	Mm.20913	NM_016680	ENSMUSG00000061028	Clasrp	Clasp|Sfrs16|Srsf16|Swap2	CLK4-associating serine/arginine rich protein	protein-coding	0.125000	0.691542	
mm_111794.1	chr12	104865010	104865210	-	1	NA	NA	NA	-34	NR_104435	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.160000	0.825871	
mm_29863.1	chr3	130060758	130060958	-	1	NA	NA	NA	49	NM_207209	99683	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.165000	0.791045	
mm_125929.1	chr15	76246918	76247118	+	1	NA	NA	NA	211	NM_023168	66168	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	0.085000	0.676617	
mm_62851.1	chr7	114415185	114415385	+	1	NA	NA	NA	31	NM_011055	18576	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0.145000	0.736318	
mm_81868.1	chr9	119037562	119037762	+	1	NA	NA	NA	5866	NR_029742	387218		NR_029742	ENSMUSG00000065513	Mir26a-1	Mirn26a|Mirn26a-1|miR-26a|mir-26a-1	microRNA 26a-1	ncRNA	0.005000	0.472637	
mm_51239.1	chr6	71543829	71544029	+	1	NA	NA	NA	75	NM_025783	66700	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	0.085000	0.651741	
mm_69643.1	chr7	138909327	138909527	-	1	NA	NA	NA	79	NM_009760	12176	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	0.080000	0.706468	
mm_23904.1	chr3	83031915	83032115	+	1	NA	NA	NA	5862	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.050000	0.537313	
mm_94122.1	chr10	128645877	128646077	-	1	NA	NA	NA	16	NM_011772	22781	Mm.358648	NM_011772	ENSMUSG00000002578	Ikzf4	A630026H08Rik|Eos|Zfpn1a4|Znfn1a4	IKAROS family zinc finger 4	protein-coding	0.045000	0.606965	
mm_36775.1	chr4	102859272	102859472	-	1	NA	NA	NA	99237	NM_001285859	73094	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0.020000	0.462687	
mm_129417.1	chr15	78390170	78390370	-	1	NA	NA	NA	-1501	NM_001163613	73376	Mm.73222	NM_028522	ENSMUSG00000062154	Tex33	1700061J05Rik|Ean57	testis expressed 33	protein-coding	0.020000	0.577114	
mm_170309.1	chr18	34954170	34954370	-	1	NA	NA	NA	81	NM_010481	15526	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.105000	0.716418	
mm_99750.1	chr11	106688562	106688762	+	1	NA	NA	NA	26619	NM_001305158	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.010000	0.497512	
mm_141195.1	chr17	27020751	27020951	-	1	NA	NA	NA	2816	NM_001251881	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.020000	0.616915	
mm_125080.1	chr15	26308768	26308968	+	1	NA	NA	NA	-180	NM_177597	211147	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0.080000	0.686567	
mm_100354.1	chr11	118428433	118428633	+	1	NA	NA	NA	76	NM_001204129	56745	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.035000	0.601990	
mm_95754.1	chr11	54902802	54903002	+	1	NA	NA	NA	48	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.070000	0.636816	
mm_113340.1	chr13	31785039	31785239	+	1	NA	NA	NA	-21507	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.020000	0.497512	
mm_56839.1	chr6	117214010	117214210	-	1	NA	NA	NA	45575	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.030000	0.482587	
mm_115655.1	chr13	12340631	12340831	-	1	NA	NA	NA	1	NM_033268	11472	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	0.105000	0.681592	
mm_42535.1	chr5	115907378	115907578	+	1	NA	NA	NA	61822	NM_007708	12704	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0.045000	0.601990	
mm_20045.1	chr2	120154451	120154651	-	1	NA	NA	NA	24	NM_133838	98878	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.125000	0.686567	
mm_124302.1	chr14	103058929	103059129	-	1	NA	NA	NA	-11187	NM_001033242	211286	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0.010000	0.442786	
mm_73782.1	chr8	117050942	117051142	+	1	NA	NA	NA	31407	NM_029686	76645	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.025000	0.542289	-38(GACTTTAAAGGA,-,0.00)
mm_171734.1	chr4	94705457	94705657	-	1	NA	NA	NA	-33732	NM_001290549	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	0.040000	0.557214	
mm_131060.1	chr16	4381640	4381840	+	1	NA	NA	NA	38758	NM_001291910	11515	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.015000	0.512438	
mm_13264.1	chr2	98666542	98666742	+	1	NA	NA	NA	1198985	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.030000	0.358209	
mm_103189.1	chr11	70615564	70615764	-	1	NA	NA	NA	-230	NM_001145537	668433	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.070000	0.572139	
mm_69613.1	chr7	137231454	137231654	-	1	NA	NA	NA	-3129	NR_045885	100038555	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	ENSMUSG00000073800	predicted gene 10578	ncRNA	0.000000	0.348259	
mm_40505.1	chr5	57731527	57731727	+	1	NA	NA	NA	13546	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.010000	0.328358	
mm_52571.1	chr6	116337905	116338105	+	1	NA	NA	NA	-17	NM_001302385	71779	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	0.135000	0.726368	
mm_157826.1	chrX	74229089	74229289	-	1	NA	NA	NA	17345	NM_010227	192176	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	0.000000	0.482587	
mm_51376.1	chr6	72993506	72993706	+	1	NA	NA	NA	-34858	NM_001190327	19240	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.025000	0.552239	
mm_148492.1	chr19	4154525	4154725	+	1	NA	NA	NA	-21	NM_016933	19265	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	0.015000	0.542289	
mm_114392.1	chr13	63272896	63273096	+	1	NA	NA	NA	24151	NR_045794	100504114	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	0.035000	0.567164	
mm_87412.1	chr10	46065200	46065400	+	1	NA	NA	NA	-179448	NR_028274	100302593		NR_028274	ENSMUSG00000095118	Snord14d	Gm23710	small nucleolar RNA, C/D box 14D	snoRNA	0.010000	0.442786	
mm_73652.1	chr8	110940863	110941063	+	1	NA	NA	NA	21098	NM_009179	20444	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	0.035000	0.507463	
mm_37042.1	chr4	115780955	115781155	-	1	NA	NA	NA	-21	NM_029196	75173	Mm.331798	NM_029196	ENSMUSG00000044556	Tex38	4930544O15Rik|Theg4	testis expressed 38	protein-coding	0.010000	0.532338	
mm_122097.1	chr14	30912591	30912791	-	1	NA	NA	NA	10896	NM_008407	16426	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	0.030000	0.562189	
mm_118157.1	chr13	105250395	105250595	-	1	NA	NA	NA	42519	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.015000	0.507463	
mm_91292.1	chr10	24915447	24915647	-	1	NA	NA	NA	4883	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.010000	0.417910	
mm_56759.1	chr6	116107428	116107628	-	1	NA	NA	NA	85846	NM_177412	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.040000	0.616915	
mm_82498.1	chr9	19928222	19928422	-	1	NA	NA	NA	11093	NM_146339	258336	Mm.261577	NM_146339	ENSMUSG00000051118	Olfr77	18A|MOR143-1	olfactory receptor 77	protein-coding	0.040000	0.492537	
mm_33081.1	chr4	123917365	123917565	+	1	NA	NA	NA	32	NM_017475	54170	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.100000	0.726368	
mm_163924.1	chr14	46883940	46884140	+	1	NA	NA	NA	1075	NM_001037221	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.045000	0.656716	
mm_24612.1	chr3	93447538	93447738	+	1	NA	NA	NA	5308	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.080000	0.582090	
mm_71243.1	chr8	40910938	40911138	+	1	NA	NA	NA	-15195	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.005000	0.497512	
mm_16081.1	chr2	168548954	168549154	+	1	NA	NA	NA	41311	NM_001291178	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.020000	0.552239	
mm_46069.1	chr5	92309910	92310110	-	1	NA	NA	NA	14	NM_172713	231452	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	0.100000	0.631841	
mm_34969.1	chr4	156008739	156008939	+	1	NA	NA	NA	-4856	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.030000	0.547264	
mm_67819.1	chr7	98178161	98178361	-	1	NA	NA	NA	13	NM_007602	12337	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0.065000	0.716418	
mm_159483.1	chr4	41569366	41569566	-	1	NA	NA	NA	61	NM_001159583	71901	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	0.100000	0.686567	
mm_21181.1	chr2	155050694	155050894	-	1	NA	NA	NA	23703	NM_016661	269378	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	0.100000	0.681592	
mm_111126.1	chr12	81421816	81422016	-	1	NA	NA	NA	123	NM_009620	11498	Mm.408462	NM_009620	ENSMUSG00000072972	Adam4	AV274654|tMDCV	a disintegrin and metallopeptidase domain 4	protein-coding	0.000000	0.492537	
mm_46203.1	chr5	98031241	98031441	-	1	NA	NA	NA	-379	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.065000	0.582090	
mm_83124.1	chr9	40414409	40414609	-	1	NA	NA	NA	41255	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.025000	0.482587	
mm_38001.1	chr4	133673991	133674191	-	1	NA	NA	NA	-1444	NM_001145956	230801	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.015000	0.477612	
mm_16850.1	chr2	11604937	11605137	-	1	NA	NA	NA	-1838	NM_152824	76938	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0.000000	0.452736	
mm_70319.1	chr8	4249358	4249558	+	1	NA	NA	NA	1244	NM_001195258	100044509	Mm.439193	NM_001195258	ENSMUSG00000089736	Tgfbr3l	Gm14378|OTTMUSG00000016477	transforming growth factor, beta receptor III-like	protein-coding	0.070000	0.656716	
mm_36439.1	chr4	82296542	82296742	-	1	NA	NA	NA	209137	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.010000	0.427861	
mm_31856.1	chr4	78211932	78212132	+	1	NA	NA	NA	-137	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.155000	0.771144	
mm_6637.1	chr1	78967992	78968192	-	1	NA	NA	NA	151143	NM_021342	57814	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	0.025000	0.472637	
mm_23881.1	chr3	83030923	83031123	+	1	NA	NA	NA	4870	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.020000	0.487562	6(GTTTTAAGAGCC,+,0.00)
mm_39498.1	chr5	21186143	21186343	+	1	NA	NA	NA	-24	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.070000	0.686567	
mm_69445.1	chr7	132991567	132991767	-	1	NA	NA	NA	23580	NM_001170744	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.035000	0.507463	
mm_19823.1	chr2	110950064	110950264	-	1	NA	NA	NA	80	NM_001128103	228432	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding	0.020000	0.527363	
mm_74070.1	chr8	122432926	122433126	+	1	NA	NA	NA	-86	NM_007806	13057	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.035000	0.646766	
mm_2236.1	chr1	91049431	91049631	+	1	NA	NA	NA	-3913	NM_001310732	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.015000	0.522388	
mm_11477.1	chr2	32384627	32384827	+	1	NA	NA	NA	-2812	NM_198001	73737	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0.010000	0.562189	
mm_138797.1	chr17	37532591	37532791	+	1	NA	NA	NA	2734	NM_001005485	545205	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	0.005000	0.258706	
mm_140680.1	chr17	12992492	12992692	-	1	NA	NA	NA	-53	NM_175394	60532	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.120000	0.721393	
mm_172033.1	chr6	125008876	125009076	+	1	NA	NA	NA	-262	NM_001252083	269800	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	0.085000	0.601990	
mm_162002.1	chr19	40089581	40089781	+	1	NA	NA	NA	2	NM_001167875	107141	Mm.474575	NM_134144	ENSMUSG00000054827	Cyp2c50	AI266900	cytochrome P450, family 2, subfamily c, polypeptide 50	protein-coding	0.000000	0.447761	
mm_122505.1	chr14	46822149	46822349	-	1	NA	NA	NA	-7	NM_022023	63985	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	0.105000	0.646766	
mm_167611.1	chr9	55242402	55242602	-	1	NA	NA	NA	33567	NM_028049	71999	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	0.010000	0.512438	
mm_32913.1	chr4	119133359	119133559	+	1	NA	NA	NA	24714	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.050000	0.601990	
mm_157920.1	chrX	78583718	78583918	-	1	NA	NA	NA	-13	NM_001164275	546336	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	0.070000	0.646766	
mm_20113.1	chr2	121159642	121159842	-	1	NA	NA	NA	11383	NM_001290819	99334	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	0.005000	0.432836	
mm_144077.1	chr17	91092741	91092941	-	1	NA	NA	NA	-39	NM_020252	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.050000	0.621891	
mm_86642.1	chr10	14134260	14134460	+	1	NA	NA	NA	167981	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.000000	0.303483	
mm_22626.1	chr3	14766363	14766563	+	1	NA	NA	NA	11997	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.005000	0.402985	
mm_149716.1	chr19	21653429	21653629	+	1	NA	NA	NA	220	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.170000	0.791045	
mm_112627.1	chr13	15850931	15851131	+	1	NA	NA	NA	43788	NR_046131	328190	Mm.446957	NR_046131		A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0.005000	0.388060	-38(CCTTTTATGCAT,+,0.00)
mm_59743.1	chr7	28818446	28818646	+	1	NA	NA	NA	-6792	NM_016772	51798	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.055000	0.626866	
mm_87965.1	chr10	63386553	63386753	+	1	NA	NA	NA	90	NM_013888	30045	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.065000	0.562189	
mm_150724.1	chr19	43647383	43647583	+	1	NA	NA	NA	27398	NM_145156	246696	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	2210403D18Rik|Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	0.020000	0.442786	
mm_98940.1	chr11	98377885	98378085	+	1	NA	NA	NA	-5826	NM_011540	21393	Mm.10762	NM_011540	ENSMUSG00000007877	Tcap	AI503981|AJ223855	titin-cap	protein-coding	0.040000	0.621891	
mm_66556.1	chr7	45235370	45235570	-	1	NA	NA	NA	3369	NM_007645	12493	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0.050000	0.577114	
mm_63653.1	chr7	128748836	128749036	+	1	NA	NA	NA	4066	NM_001029982	207352	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	0.005000	0.542289	
mm_158776.1	chrX	167091864	167092064	-	1	NA	NA	NA	-21594	NM_001101606	667794	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	0.005000	0.492537	
mm_171086.1	chr3	124385407	124385607	+	1	NA	NA	NA	40521	NM_027939	71824	Mm.331353	NM_027939	ENSMUSG00000027973	1700006A11Rik	-	RIKEN cDNA 1700006A11 gene	protein-coding	0.040000	0.427861	-40(GATTATAAATGG,-,0.00)
mm_143914.1	chr17	85614905	85615105	-	1	NA	NA	NA	3391	NR_038084	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.075000	0.626866	
mm_99217.1	chr11	101031288	101031488	+	1	NA	NA	NA	1048	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.010000	0.378109	
mm_184.1	chr1	15201749	15201949	+	1	NA	NA	NA	-110603	NM_001098528	98741	Mm.156081	NM_001033195	ENSMUSG00000092083	Kcnb2	9630047L19Rik|BB130875|Kv2.2	potassium voltage gated channel, Shab-related subfamily, member 2	protein-coding	0.000000	0.492537	
mm_96716.1	chr11	69664239	69664439	+	1	NA	NA	NA	1296	NR_035455	100316840		NR_035455	ENSMUSG00000088752	Mir1934	mir-1934|mmu-mir-1934	microRNA 1934	ncRNA	0.020000	0.522388	
mm_25165.1	chr3	103064950	103065150	+	1	NA	NA	NA	6765	NM_010937	18176	Mm.400954	NM_010937	ENSMUSG00000027852	Nras	AV095280|N-ras	neuroblastoma ras oncogene	protein-coding	0.000000	0.288557	
mm_108499.1	chr12	83763564	83763764	+	1	NA	NA	NA	30	NM_130887	170721	Mm.133443	NM_130887	ENSMUSG00000021223	Papln	E030033C16Rik	papilin, proteoglycan-like sulfated glycoprotein	protein-coding	0.055000	0.651741	
mm_109157.1	chr12	108179053	108179253	+	1	NA	NA	NA	131	NM_028262	52690	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0.155000	0.766169	
mm_54133.1	chr6	21783949	21784149	-	1	NA	NA	NA	68466	NM_173007	269831	Mm.21950	NM_173007	ENSMUSG00000029669	Tspan12	9030619E17|AI426782|AI663988|AW111457|Tm4sf12	tetraspanin 12	protein-coding	0.005000	0.313433	0(TCTTATAAATGC,+,0.00)
mm_152100.1	chr19	6910038	6910238	-	1	NA	NA	NA	440	NM_026306	67674	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.080000	0.611940	
mm_37657.1	chr4	128961782	128961982	-	1	NA	NA	NA	573	NM_172875	242669	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.015000	0.442786	-89(CCTTTTATAAAT,+,0.00)
mm_97798.1	chr11	82951327	82951527	+	1	NA	NA	NA	-675	NM_183201	327978	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	0.035000	0.597015	
mm_148608.1	chr19	5327955	5328155	+	1	NA	NA	NA	-7686	NM_139301	225865	Mm.87321	NM_139301	ENSMUSG00000038498	Catsper1	Catsper|KSper	cation channel, sperm associated 1	protein-coding	0.080000	0.661692	
mm_89374.1	chr10	88740050	88740250	+	1	NA	NA	NA	8736	NM_025859	104303	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0.005000	0.522388	
mm_85218.1	chr9	96984094	96984294	-	1	NA	NA	NA	34161	NM_145134	211949	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0.035000	0.577114	
mm_100363.1	chr11	118515686	118515886	+	1	NA	NA	NA	38826	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.015000	0.557214	
mm_43091.1	chr5	124450740	124450940	+	1	NA	NA	NA	4136	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.020000	0.527363	
mm_44223.1	chr5	4803536	4803736	-	1	NA	NA	NA	-45420	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.005000	0.308458	
mm_149579.1	chr19	14834615	14834815	+	1	NA	NA	NA	-236532	NM_001302947	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.010000	0.442786	
mm_149410.1	chr19	11407610	11407810	+	1	NA	NA	NA	49	NM_029499	64380	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	0.000000	0.412935	
mm_36678.1	chr4	96507238	96507438	-	1	NA	NA	NA	48	NM_001104927	665095	Mm.331717	NM_001104927	ENSMUSG00000082932	Cyp2j8	Cyp2j8-ps|OTTMUSG00000007938	cytochrome P450, family 2, subfamily j, polypeptide 8	protein-coding	0.005000	0.522388	
mm_39282.1	chr5	3928184	3928384	+	1	NA	NA	NA	98	NM_194462	100986	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	0.170000	0.786070	
mm_103400.1	chr11	75438337	75438537	-	1	NA	NA	NA	1064	NM_008878	18816	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	0.025000	0.567164	
mm_109734.1	chr12	117153726	117153926	+	1	NA	NA	NA	-2557	NR_033538	100038689	Mm.445351	NR_033538	ENSMUSG00000099907	Gm10421	ENSMUSG00000072792	predicted gene 10421	ncRNA	0.160000	0.756219	
mm_107857.1	chr12	69597664	69597864	+	1	NA	NA	NA	-14736	NM_001033236	207965	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0.015000	0.363184	
mm_4143.1	chr1	170978712	170978912	+	1	NA	NA	NA	-2741	NM_010187	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.015000	0.507463	
mm_123006.1	chr14	54993642	54993842	-	1	NA	NA	NA	807	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.030000	0.547264	
mm_64357.1	chr7	142390168	142390368	+	1	NA	NA	NA	-2398	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.005000	0.532338	
mm_153362.1	chr19	40187186	40187386	-	1	NA	NA	NA	0	NM_145499	226105	Mm.29119	NM_145499	ENSMUSG00000060613	Cyp2c70	-	cytochrome P450, family 2, subfamily c, polypeptide 70	protein-coding	0.010000	0.402985	-32(GCATTTATAGTC,+,0.00)
mm_3849.1	chr1	160246142	160246342	+	1	NA	NA	NA	-33350	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0.005000	0.462687	
mm_158692.1	chrX	160976405	160976605	-	1	NA	NA	NA	18176	NM_001024624	382253	Mm.443717	NM_001024624	ENSMUSG00000031292	Cdkl5	BC038161|Stk9	cyclin-dependent kinase-like 5	protein-coding	0.005000	0.567164	
mm_60075.1	chr7	33943116	33943316	+	1	NA	NA	NA	1769	NM_178308	110187	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	0.000000	0.363184	-13(TTCTTTAAGAGG,-,0.00)
mm_117530.1	chr13	82950451	82950651	-	1	NA	NA	NA	-252218	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0.010000	0.427861	
mm_110228.1	chr12	28808602	28808802	-	1	NA	NA	NA	56874	NM_201357	380752	Mm.273724	NM_201357	ENSMUSG00000036613	Tssc1	D12Ertd604e|Eipr1	tumor suppressing subtransferable candidate 1	protein-coding	0.010000	0.477612	
mm_100556.1	chr11	120729392	120729592	+	1	NA	NA	NA	-2208	NM_001347608	67880	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	0.040000	0.537313	
mm_130417.1	chr15	98004604	98004804	-	1	NA	NA	NA	20	NM_031163	12824	Mm.2423	NM_031163	ENSMUSG00000022483	Col2a1	Col2|Col2a|Col2a-1|Del1|Dmm|Lpk|Rgsc856	collagen, type II, alpha 1	protein-coding	0.085000	0.726368	
mm_98807.1	chr11	97050767	97050967	+	1	NA	NA	NA	47	NM_001081434	71240	Mm.190450	NM_001081434	ENSMUSG00000038534	Osbpl7	4933437E18Rik	oxysterol binding protein-like 7	protein-coding	0.045000	0.621891	
mm_69456.1	chr7	133123109	133123309	-	1	NA	NA	NA	274	NM_009980	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.115000	0.786070	
mm_124413.1	chr14	118012730	118012930	-	1	NA	NA	NA	39416	NM_010024	13190	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	0.005000	0.412935	
mm_66168.1	chr7	33854737	33854937	-	1	NA	NA	NA	90148	NM_178308	110187	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	0.005000	0.517413	-34(TGGTTTATATGG,-,0.00)
mm_165691.1	chr3	93279463	93279663	+	1	NA	NA	NA	-40186	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.010000	0.407960	
mm_12429.1	chr2	70563593	70563793	+	1	NA	NA	NA	-336	NR_040496	68986	Mm.437697	NR_040496	ENSMUSG00000087264	Gad1os	1500002O10Rik	glutamate decarboxylase 1, opposite strand	ncRNA	0.070000	0.691542	
mm_121509.1	chr14	121951448	121951648	+	1	NA	NA	NA	13645	NM_183031	321019	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.000000	0.452736	
mm_36261.1	chr4	63467363	63467563	-	1	NA	NA	NA	28528	NM_001008793	73750	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0.020000	0.582090	
mm_31691.1	chr4	62361485	62361685	+	1	NA	NA	NA	884	NM_175090	20529	Mm.248637	NM_175090	ENSMUSG00000066150	Slc31a1	4930445G01Rik|AI787263|AU016967|Ctr1	solute carrier family 31, member 1	protein-coding	0.015000	0.402985	
mm_22119.1	chr2	170155004	170155204	-	1	NA	NA	NA	-12429	NM_001159683	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.030000	0.467662	
mm_11196.1	chr2	29124910	29125110	+	1	NA	NA	NA	18	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.080000	0.651741	
mm_106628.1	chr11	120866511	120866711	-	1	NA	NA	NA	-42064	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.005000	0.537313	
mm_77408.1	chr8	120588935	120589135	-	1	NA	NA	NA	40	NM_178856	272551	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.095000	0.631841	
mm_28609.1	chr3	94757314	94757514	-	1	NA	NA	NA	29101	NM_001293727	70737	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	0.015000	0.442786	
mm_133043.1	chr16	57498073	57498273	+	1	NA	NA	NA	-51069	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.000000	0.407960	
mm_75004.1	chr8	27230726	27230926	-	1	NA	NA	NA	-1238	NM_013462	11556	Mm.278475	NM_013462	ENSMUSG00000031489	Adrb3	Adrb-3	adrenergic receptor, beta 3	protein-coding	0.015000	0.592040	
mm_139659.1	chr17	57404343	57404543	+	1	NA	NA	NA	45757	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.407960	
mm_166454.1	chr5	137981394	137981594	+	1	NA	NA	NA	-27	NM_013478	12007	Mm.30061	NM_013478	ENSMUSG00000037053	Azgp1	Zag	alpha-2-glycoprotein 1, zinc	protein-coding	0.015000	0.552239	
mm_15688.1	chr2	163658340	163658540	+	1	NA	NA	NA	-18	NM_001164053	18769	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.175000	0.766169	
mm_39472.1	chr5	19907693	19907893	+	1	NA	NA	NA	275	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.015000	0.477612	
mm_127604.1	chr15	102406872	102407072	+	1	NA	NA	NA	656	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.020000	0.472637	80(TCTCTTATAGTC,+,0.00)
mm_136749.1	chr17	8525150	8525350	+	1	NA	NA	NA	-1551	NM_001290707	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.060000	0.636816	
mm_130578.1	chr15	99527567	99527767	-	1	NA	NA	NA	498	NM_028224	72393	Mm.39760	NM_028224	ENSMUSG00000023011	Faim2	2900002L20Rik|Lfg|Lfg2|NMP25|Nmp35|Tmbim2	Fas apoptotic inhibitory molecule 2	protein-coding	0.060000	0.641791	
mm_56417.1	chr6	97252588	97252788	-	1	NA	NA	NA	92	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.000000	0.373134	
mm_164995.1	chr19	17145457	17145657	+	1	NA	NA	NA	189439	NM_181348	353211	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.015000	0.283582	
mm_49943.1	chr6	39871456	39871656	+	1	NA	NA	NA	-60620	NM_001010930	14548	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.090000	0.681592	
mm_150945.1	chr19	46308128	46308328	+	1	NA	NA	NA	2298	NM_001177370	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.025000	0.517413	
mm_65164.1	chr7	19676658	19676858	-	1	NA	NA	NA	1183	NM_001277944	11813	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0.000000	0.552239	
mm_112105.1	chr12	112785491	112785691	-	1	NA	NA	NA	-23384	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.015000	0.477612	
mm_88076.1	chr10	67979555	67979755	+	1	NA	NA	NA	57	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.085000	0.626866	-34(CTGTTTTAAAGA,-,0.00)
mm_100469.1	chr11	119942991	119943191	+	1	NA	NA	NA	-1	NM_001037754	108100	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0.105000	0.706468	-35(GGCTATAAAAGC,-,0.00)
mm_52910.1	chr6	122820690	122820890	+	1	NA	NA	NA	606	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.010000	0.661692	
mm_9969.1	chr1	191183152	191183352	-	1	NA	NA	NA	81	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.100000	0.636816	-36(GGGCTTTAAAAG,-,0.00),-35(GGCTTTAAAAGG,-,0.00),-34(GCTTTAAAAGGG,+,0.00),-33(CTTTAAAAGGGG,+,0.00)
mm_56662.1	chr6	113501857	113502057	-	1	NA	NA	NA	-26	NM_001289700	210673	Mm.133060	NM_172487	ENSMUSG00000045009	Prrt3	6330505P20|B230206N24Rik	proline-rich transmembrane protein 3	protein-coding	0.090000	0.651741	
mm_39358.1	chr5	9101232	9101432	+	1	NA	NA	NA	595	NM_001081029	652925	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.100000	0.651741	
mm_152466.1	chr19	10948459	10948659	-	1	NA	NA	NA	707	NM_023731	108673	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0.055000	0.656716	
mm_127875.1	chr15	8465191	8465391	-	1	NA	NA	NA	-20828	NM_201232	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.055000	0.447761	
mm_123383.1	chr14	63271768	63271968	-	1	NA	NA	NA	-26597	NM_001310610	14463	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0.025000	0.517413	-64(TGCTTTAAAGAG,-,0.00),-62(CTTTAAAGAGAG,+,0.00)
mm_12968.1	chr2	90738336	90738536	+	1	NA	NA	NA	-6934	NM_018828	55935	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0.005000	0.477612	
mm_137659.1	chr17	28691294	28691494	+	1	NA	NA	NA	52	NM_001168514	26416	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.115000	0.691542	
mm_8304.1	chr1	144003748	144003948	-	1	NA	NA	NA	301	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.020000	0.502488	
mm_14495.1	chr2	131950761	131950961	+	1	NA	NA	NA	0	NM_001278257	26434	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion protein dublet	protein-coding	0.030000	0.601990	-33(GCCTATATAGCT,+,0.00)
mm_13281.1	chr2	101624613	101624813	+	1	NA	NA	NA	-35	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.010000	0.542289	
mm_61511.1	chr7	78882527	78882727	+	1	NA	NA	NA	-5650	NR_029826	723884		NR_029826	ENSMUSG00000065609	Mir7-2	Mir7a2|Mirn7-2|mir-7a-2|mir-7a2|mmu-mir-7-2|mmu-mir-7a2	microRNA 7-2	ncRNA	0.080000	0.641791	-33(CGGCTTTAAAGC,-,0.00),-31(GCTTTAAAGCAG,+,0.00)
mm_127137.1	chr15	98168182	98168382	+	1	NA	NA	NA	476	NM_177716	239650	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	0.050000	0.681592	
mm_49036.1	chr6	4759819	4760019	+	1	NA	NA	NA	12613	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.402985	31(CCTTTAAGGCCG,+,0.00)
mm_139201.1	chr17	47668676	47668876	+	1	NA	NA	NA	-18834	NR_045945	100415787	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|OTTMUSG00000018355|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	0.010000	0.497512	
mm_123023.1	chr14	55116498	55116698	-	1	NA	NA	NA	337	NM_177049	319984	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.020000	0.621891	
mm_64361.1	chr7	142399394	142399594	+	1	NA	NA	NA	-11624	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.005000	0.452736	
mm_10018.1	chr1	192073925	192074125	-	1	NA	NA	NA	18574	NM_011633	22033	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.015000	0.547264	
mm_8121.1	chr1	136132957	136133157	-	1	NA	NA	NA	1656	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.010000	0.597015	
mm_89173.1	chr10	86331528	86331728	+	1	NA	NA	NA	31216	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.000000	0.542289	
mm_86797.1	chr10	20267155	20267355	+	1	NA	NA	NA	30433	NR_105840	102466647		NR_105840	ENSMUSG00000098887	Mir6413	Gm27432|mmu-mir-6413	microRNA 6413	ncRNA	0.030000	0.587065	
mm_59608.1	chr7	28142194	28142394	+	1	NA	NA	NA	12828	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.537313	-47(CCCTTTCAAGCC,+,0.00)
mm_107819.1	chr12	67059087	67059287	+	1	NA	NA	NA	163362	NM_001193266	320772	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	0.000000	0.333333	
mm_82880.1	chr9	32486242	32486442	-	1	NA	NA	NA	55110	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.010000	0.497512	
mm_86095.1	chr9	115243620	115243820	-	1	NA	NA	NA	38350	NR_029430	111186	Mm.484753	NR_029430		Stmn1-rs1	Lag-rs1|Lap18-rs1	stathmin 1, related sequence 1	pseudo	0.010000	0.378109	
mm_43455.1	chr5	136217465	136217665	+	1	NA	NA	NA	-18611	NM_025774	66801	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0.035000	0.547264	
mm_165946.1	chr4	82591122	82591322	+	1	NA	NA	NA	83233	NR_137202	102635783	Mm.41666	NR_137202		Gm11266	OTTMUSG00000000396	predicted gene 11266	ncRNA	0.010000	0.457711	
mm_142423.1	chr17	45568953	45569153	-	1	NA	NA	NA	4208	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.030000	0.542289	
mm_47090.1	chr5	117388940	117389140	-	1	NA	NA	NA	-17	NM_028128	72151	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	0.135000	0.721393	
mm_107466.1	chr12	37241832	37242032	+	1	NA	NA	NA	293	NM_178767	319660	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	0.005000	0.472637	
mm_63776.1	chr7	131560281	131560481	+	1	NA	NA	NA	11	NM_009774	12237	Mm.927	NM_009774	ENSMUSG00000066979	Bub3	AU019800|AU021329|AU043350|AW146323|C78067	BUB3 mitotic checkpoint protein	protein-coding	0.090000	0.601990	
mm_42914.1	chr5	122655493	122655693	+	1	NA	NA	NA	5169	NM_001284402	18439	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.005000	0.512438	
mm_109743.1	chr12	117533784	117533984	+	1	NA	NA	NA	17405	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.155000	0.805970	
mm_171873.1	chr5	29356379	29356579	-	1	NA	NA	NA	21911	NM_020295	56873	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0.075000	0.651741	
mm_13952.1	chr2	121303300	121303500	+	1	NA	NA	NA	7946	NM_001173506	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.040000	0.567164	
mm_61138.1	chr7	56239662	56239862	+	1	NA	NA	NA	-9	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p|p<cas>	oculocutaneous albinism II	protein-coding	0.010000	0.567164	
mm_127088.1	chr15	97782091	97782291	+	1	NA	NA	NA	-2174	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.035000	0.497512	
mm_116325.1	chr13	37993983	37994183	-	1	NA	NA	NA	107	NM_025965	107513	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0.110000	0.716418	
mm_168457.1	chr1	143683080	143683280	+	1	NA	NA	NA	19713	NM_145991	214498	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	0.020000	0.437811	
mm_142913.1	chr17	53539335	53539535	-	1	NA	NA	NA	16	NM_173449	110332	Mm.444633	NM_173449	ENSMUSG00000044957	Pp2d1	4921523A10Rik	protein phosphatase 2C-like domain containing 1	protein-coding	0.000000	0.477612	
mm_140589.1	chr17	10216677	10216877	-	1	NA	NA	NA	102584	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.015000	0.303483	
mm_78789.1	chr9	44043174	44043374	+	1	NA	NA	NA	-110	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.035000	0.606965	
mm_46200.1	chr5	98030916	98031116	-	1	NA	NA	NA	-54	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.115000	0.686567	
mm_154456.1	chrM	2324	2524	-	1	NA	NA	NA	NA	NA									0.045000	0.407960	-50(CCATTAATAGCT,+,0.00),25(TCTTAAATAGGA,+,0.00)
mm_74117.1	chr8	123102248	123102448	+	1	NA	NA	NA	-2	NM_016738	270106	Mm.319719	NM_016738	ENSMUSG00000000740	Rpl13	A52|L13	ribosomal protein L13	protein-coding	0.100000	0.597015	-61(GGCTAGAAAGGC,-,0.00)
mm_62124.1	chr7	96825430	96825630	+	1	NA	NA	NA	-23981	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA	0.000000	0.487562	-75(CCCCTTTAGAGG,-,0.00),-74(CCCTTTAGAGGT,+,0.00)
mm_19362.1	chr2	91098735	91098935	-	1	NA	NA	NA	2157	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.010000	0.542289	
mm_25765.1	chr3	125404233	125404433	+	1	NA	NA	NA	242	NM_022565	64580	Mm.444289	NM_022565	ENSMUSG00000027971	Ndst4	4930439H17Rik	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	protein-coding	0.030000	0.477612	
mm_18789.1	chr2	73775000	73775200	-	1	NA	NA	NA	246	NM_001166603	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	0.175000	0.805970	
mm_26044.1	chr3	135584557	135584757	+	1	NA	NA	NA	99046	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.005000	0.343284	77(TCTTTTAAAGTA,+,0.00)
mm_147290.1	chr18	39490318	39490518	-	1	NA	NA	NA	-3173	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.100000	0.721393	
mm_113505.1	chr13	37581030	37581230	+	1	NA	NA	NA	235785	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.010000	0.442786	51(CATTATATAAGG,-,0.00)
mm_105422.1	chr11	103697629	103697829	-	1	NA	NA	NA	5	NR_102396	399609	Mm.351922	NR_102388		C130046K22Rik	-	RIKEN cDNA C130046K22 gene	ncRNA	0.105000	0.666667	
mm_29247.1	chr3	107218104	107218304	-	1	NA	NA	NA	3528	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.507463	
mm_149054.1	chr19	8839181	8839381	+	1	NA	NA	NA	-35	NM_010316	14704	Mm.329700	NM_010316	ENSMUSG00000071658	Gng3	-	guanine nucleotide binding protein (G protein), gamma 3	protein-coding	0.005000	0.537313	
mm_100369.1	chr11	119086722	119086922	+	1	NA	NA	NA	-585	NM_007625	12418	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.050000	0.626866	
mm_95142.1	chr11	35121355	35121555	+	1	NA	NA	NA	-1	NM_011412	20564	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit homolog 3 (Drosophila)	protein-coding	0.165000	0.820896	
mm_74832.1	chr8	23193429	23193629	-	1	NA	NA	NA	14924	NM_018743	102247	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	0.010000	0.383085	-32(GTTTATAAAAAC,-,0.00)
mm_5857.1	chr1	53706708	53706908	-	1	NA	NA	NA	-24	NM_001252070	627872	Mm.184692	NM_001252070	ENSMUSG00000096141	Dnah7a	Dnahc7|Dnahc7a|Gm992	dynein, axonemal, heavy chain 7A	protein-coding	0.075000	0.577114	
mm_75196.1	chr8	39006120	39006320	-	1	NA	NA	NA	353	NM_030254	80286	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	0.085000	0.686567	
mm_149019.1	chr19	8741740	8741940	+	1	NA	NA	NA	37	NM_019829	56389	Mm.153061	NM_019829	ENSMUSG00000010110	Stx5a	0610031F24Rik|D19Ertd627e|Stx5	syntaxin 5A	protein-coding	0.035000	0.517413	-18(CTTTTAAGAGGG,+,0.00)
mm_40424.1	chr5	53471230	53471430	+	1	NA	NA	NA	-84449	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.010000	0.497512	
mm_54257.1	chr6	28262574	28262774	-	1	NA	NA	NA	-1073	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.020000	0.457711	
mm_60791.1	chr7	45570227	45570427	+	1	NA	NA	NA	174	NM_009737	12036	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.075000	0.696517	
mm_114880.1	chr13	94191977	94192177	+	1	NA	NA	NA	93204	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.020000	0.482587	
mm_39553.1	chr5	21790507	21790707	+	1	NA	NA	NA	5324	NM_011188	19181	Mm.2462	NM_011188	ENSMUSG00000028932	Psmc2	-	proteasome (prosome, macropain) 26S subunit, ATPase 2	protein-coding	0.010000	0.393035	
mm_147699.1	chr18	60807960	60808160	-	1	NA	NA	NA	-4016	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.035000	0.587065	
mm_101036.1	chr11	8600693	8600893	-	1	NA	NA	NA	63742	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.005000	0.517413	
mm_78870.1	chr9	44407556	44407756	+	1	NA	NA	NA	-58	NM_024266	75617	Mm.292027	NM_024266	ENSMUSG00000009927	Rps25	2810009D21Rik	ribosomal protein S25	protein-coding	0.050000	0.562189	
mm_51753.1	chr6	87657681	87657881	+	1	NA	NA	NA	14387	NM_024251	72103	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding	0.000000	0.417910	
mm_121814.1	chr14	20393523	20393723	-	1	NA	NA	NA	-68	NM_025440	66242	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16	mitochondrial ribosomal protein S16	protein-coding	0.130000	0.731343	
mm_2662.1	chr1	125779929	125780129	+	1	NA	NA	NA	103033	NM_027677	71111	Mm.32727	NM_027677	ENSMUSG00000026343	Gpr39	4933415E13Rik	G protein-coupled receptor 39	protein-coding	0.010000	0.477612	
mm_37288.1	chr4	119173775	119173975	-	1	NA	NA	NA	-19	NM_183140	195522	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	0.020000	0.562189	
mm_134562.1	chr16	20302280	20302480	-	1	NA	NA	NA	-18	NM_001005767	381038	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	0.075000	0.587065	
mm_141703.1	chr17	33999377	33999577	-	1	NA	NA	NA	856	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.105000	0.636816	
mm_135720.1	chr16	55818425	55818625	-	1	NA	NA	NA	3613	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.025000	0.502488	-66(TTCTTTTAAAAG,-,0.00),-64(CTTTTAAAAGAA,+,0.00)
mm_78521.1	chr9	33728310	33728510	+	1	NA	NA	NA	-313961	NR_040744	77119	Mm.367930	NR_040744	ENSMUSG00000098758	7630403G23Rik	-	RIKEN cDNA 7630403G23 gene	ncRNA	0.075000	0.577114	
mm_81595.1	chr9	110529096	110529296	+	1	NA	NA	NA	-3401	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.025000	0.532338	
mm_123827.1	chr14	70626782	70626982	-	1	NA	NA	NA	183	NM_001252662	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.045000	0.592040	
mm_167601.1	chr9	50659853	50660053	-	1	NA	NA	NA	-173	NM_145614	235339	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	0.055000	0.597015	
mm_159786.1	chr5	107403462	107403662	+	1	NA	NA	NA	49	NM_001001804	384214	Mm.489863	NM_001001804	ENSMUSG00000033805	Ephx4	Abhd7|Ephxrp|Gm1382	epoxide hydrolase 4	protein-coding	0.160000	0.791045	
mm_106428.1	chr11	119347811	119348011	-	1	NA	NA	NA	7599	NM_018822	27029	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	0.010000	0.567164	
mm_19571.1	chr2	101640131	101640331	-	1	NA	NA	NA	9301	NM_009019	19373	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0.000000	0.398010	
mm_170611.1	chr19	5845505	5845705	-	1	NA	NA	NA	-125	NR_003513	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.060000	0.552239	
mm_33572.1	chr4	132274350	132274550	+	1	NA	NA	NA	75	NM_025579	66464	Mm.331926	NM_025579	ENSMUSG00000028899	Taf12	20kDa|2810422D08Rik|AW557038|Taf2J	TATA-box binding protein associated factor 12	protein-coding	0.080000	0.661692	
mm_130519.1	chr15	98872071	98872271	-	1	NA	NA	NA	-966	NM_001033276	381022	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.070000	0.631841	
mm_150994.1	chr19	46612390	46612590	+	1	NA	NA	NA	-10911	NM_001177813	226178	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.015000	0.447761	
mm_166935.1	chr7	35466039	35466239	+	1	NA	NA	NA	16960	NM_021291	30962	Mm.45874	NM_021291	ENSMUSG00000030492	Slc7a9	CSNU3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	protein-coding	0.005000	0.442786	
mm_143832.1	chr17	84083498	84083698	-	1	NA	NA	NA	4938	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.015000	0.422886	
mm_116443.1	chr13	43154658	43154858	-	1	NA	NA	NA	16743	NM_001252639	67046	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	0.035000	0.532338	
mm_22001.1	chr2	167744064	167744264	-	1	NA	NA	NA	52987	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.010000	0.592040	
mm_13255.1	chr2	98664791	98664991	+	1	NA	NA	NA	1197234	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.010000	0.368159	
mm_76356.1	chr8	84772076	84772276	-	1	NA	NA	NA	2193	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.085000	0.606965	
mm_156196.1	chrX	134187409	134187609	+	1	NA	NA	NA	8	NM_028947	74448	Mm.159203	NM_028947	ENSMUSG00000052549	Arl13a	4933422M21Rik|Arl13	ADP-ribosylation factor-like 13A	protein-coding	0.005000	0.383085	8(CCCTTTAAGTGG,-,0.00),48(AGGCTTAAAAGC,-,0.00)
mm_148306.1	chr18	83325775	83325975	-	1	NA	NA	NA	9	NR_045361	70960	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0.075000	0.597015	
mm_162692.1	chr10	19851331	19851531	-	1	NA	NA	NA	28	NM_029529	76157	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	0.075000	0.711443	
mm_141143.1	chr17	26502997	26503197	-	1	NA	NA	NA	5375	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.010000	0.542289	
mm_108403.1	chr12	81630984	81631184	+	1	NA	NA	NA	-165	NM_001033149	69480	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	0.070000	0.656716	
mm_161069.1	chr12	76370098	76370298	+	1	NA	NA	NA	-68	NM_178744	268564	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.070000	0.711443	
mm_168739.1	chr12	115158787	115158987	-	1	NA	NA	NA	536907	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.005000	0.412935	
mm_5262.1	chr1	16996839	16997039	-	1	NA	NA	NA	100950	NM_020604	57339	Mm.143761	NM_020604	ENSMUSG00000042686	Jph1	ENSMUSG00000054314|JP-1|Jp1	junctophilin 1	protein-coding	0.025000	0.437811	
mm_144532.1	chr18	25168911	25169111	+	1	NA	NA	NA	-9	NM_001033532	225289	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	0.130000	0.766169	
mm_90643.1	chr10	128706158	128706358	+	1	NA	NA	NA	0	NM_021882	20431	Mm.16756	NM_021882	ENSMUSG00000025359	Pmel	D10H12S53E|D12S53Eh|Pmel17|Si|Silv|gp100|gp87	premelanosome protein	protein-coding	0.010000	0.577114	-32(TTCTATATAGGG,-,0.00)
mm_76125.1	chr8	80879691	80879891	-	1	NA	NA	NA	688	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.135000	0.711443	
mm_78719.1	chr9	41579603	41579803	+	1	NA	NA	NA	-1550	NR_015483	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.010000	0.532338	
mm_151770.1	chr19	5273178	5273378	-	1	NA	NA	NA	-159	NM_153129	107975	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	0.145000	0.766169	
mm_136883.1	chr17	13008191	13008391	+	1	NA	NA	NA	452	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.075000	0.641791	
mm_70034.1	chr7	142576788	142576988	-	1	NA	NA	NA	259	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.055000	0.631841	
mm_120435.1	chr14	65805955	65806155	+	1	NA	NA	NA	144	NM_023209	52033	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	0.095000	0.616915	
mm_112863.1	chr13	20847168	20847368	+	1	NA	NA	NA	53155	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.253731	
mm_125936.1	chr15	76247750	76247950	+	1	NA	NA	NA	-341	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.010000	0.502488	
mm_131825.1	chr16	22939290	22939490	+	1	NA	NA	NA	-11682	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.020000	0.582090	
mm_123968.1	chr14	75130515	75130715	-	1	NA	NA	NA	268	NM_027581	70859	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	0.070000	0.621891	
mm_113737.1	chr13	44467398	44467598	+	1	NA	NA	NA	27771	NR_045489	69491	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.020000	0.398010	
mm_91816.1	chr10	54075641	54075841	-	1	NA	NA	NA	55	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.145000	0.716418	
mm_5683.1	chr1	43163827	43164027	-	1	NA	NA	NA	34	NM_010212	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.120000	0.731343	-67(GTCCTTATATGG,-,0.00),-65(CCTTATATGGTC,+,0.00)
mm_128278.1	chr15	36866157	36866357	-	1	NA	NA	NA	-69328	NM_001253806	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.005000	0.537313	
mm_82247.1	chr9	4795503	4795703	-	1	NA	NA	NA	631	NM_001113180	14802	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.040000	0.587065	
mm_144111.1	chr18	4353446	4353646	+	1	NA	NA	NA	-1	NR_040328	73915	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0.065000	0.671642	
mm_137187.1	chr17	23820884	23821084	+	1	NA	NA	NA	8125	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.015000	0.582090	
mm_53992.1	chr6	6881025	6881225	-	1	NA	NA	NA	943	NM_198854	13395	Mm.4873	NM_010056	ENSMUSG00000029755	Dlx5	AI385752	distal-less homeobox 5	protein-coding	0.045000	0.601990	
mm_167173.1	chr7	139339159	139339359	+	1	NA	NA	NA	-49850	NM_183144	212111	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.015000	0.532338	-4(ACACTTAAAAGG,-,0.00)
mm_92000.1	chr10	62231120	62231320	-	1	NA	NA	NA	-2	NM_197996	70423	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0.135000	0.761194	
mm_61331.1	chr7	68274420	68274620	+	1	NA	NA	NA	578	NR_040341	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.010000	0.527363	
mm_53722.1	chr6	144672747	144672947	+	1	NA	NA	NA	-21	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA	0.015000	0.537313	-48(CCTCATAGGGGC,+,0.00)
mm_150063.1	chr19	29385979	29386179	+	1	NA	NA	NA	18641	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.010000	0.407960	
mm_1571.1	chr1	74259918	74260118	+	1	NA	NA	NA	-18582	NM_174985	227289	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.005000	0.373134	-6(TTTTTTAAAGGC,+,0.00)
mm_37552.1	chr4	125346891	125347091	-	1	NA	NA	NA	-143840	NM_001081097	14807	Mm.40896	NM_001081097	ENSMUSG00000001985	Grik3	9630027E11|GluK3|GluR7-3|Glur-7|Glur7	glutamate receptor, ionotropic, kainate 3	protein-coding	0.015000	0.462687	
mm_159440.1	chr3	125956577	125956777	-	1	NA	NA	NA	-18127	NM_011674	22239	Mm.306021	NM_011674	ENSMUSG00000032854	Ugt8a	AI850488|AW455908|Cgt|Ugt8|mCerGT	UDP galactosyltransferase 8A	protein-coding	0.005000	0.547264	
mm_102933.1	chr11	69600881	69601081	-	1	NA	NA	NA	4979	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.025000	0.482587	
mm_33692.1	chr4	133518627	133518827	+	1	NA	NA	NA	-236	NM_001083916	69073	Mm.299081	NM_133707	ENSMUSG00000037600	Kdf1	1810019J16Rik	keratinocyte differentiation factor 1	protein-coding	0.020000	0.532338	
mm_74441.1	chr8	3878459	3878659	-	1	NA	NA	NA	-60	NM_130904	170779	Mm.111026	NM_130904	ENSMUSG00000031495	Cd209d	SIGN-R3|SIGNR3|mSIGNR3	CD209d antigen	protein-coding	0.010000	0.482587	
mm_48579.1	chr5	143506104	143506304	-	1	NA	NA	NA	21789	NM_009007	19353	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	RAS-related C3 botulinum substrate 1	protein-coding	0.025000	0.412935	
mm_24898.1	chr3	96172449	96172649	+	1	NA	NA	NA	43	NM_153053	107701	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	0.075000	0.661692	
mm_111637.1	chr12	102631800	102632000	-	1	NA	NA	NA	53120	NR_035457	100316812		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.025000	0.512438	
mm_106031.1	chr11	116077426	116077626	-	1	NA	NA	NA	435	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.045000	0.651741	
mm_90647.1	chr10	128744880	128745080	+	1	NA	NA	NA	-924	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.015000	0.527363	
mm_42139.1	chr5	111416514	111416714	+	1	NA	NA	NA	-1552	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.105000	0.711443	
mm_152667.1	chr19	14597610	14597810	-	1	NA	NA	NA	473	NM_001302950	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.095000	0.557214	
mm_118990.1	chr14	28505402	28505602	+	1	NA	NA	NA	29	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.025000	0.552239	
mm_166929.1	chr7	33741741	33741941	+	1	NA	NA	NA	-1958	NM_001099329	100043860	Mm.389875	NM_001099329	ENSMUSG00000078753	Scgb1b24	Abpa24|Gm12769|OTTMUSG00000008385	secretoglobin, family 1B, member 24	protein-coding	0.000000	0.472637	
mm_18886.1	chr2	76709048	76709248	-	1	NA	NA	NA	33833	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.010000	0.472637	
mm_30722.1	chr4	13743351	13743551	+	1	NA	NA	NA	149	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.120000	0.726368	
mm_16256.1	chr2	173264954	173265154	+	1	NA	NA	NA	11479	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.025000	0.547264	-33(GGGTTTAAAAAG,-,0.00),-31(GTTTAAAAAGCC,+,0.00)
mm_160492.1	chr8	127405434	127405634	+	1	NA	NA	NA	105882	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.015000	0.512438	
mm_57413.1	chr6	124888073	124888273	-	1	NA	NA	NA	36	NM_013488	12504	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	0.030000	0.522388	40(CCTCATATACAC,+,0.00)
mm_131757.1	chr16	22871617	22871817	+	1	NA	NA	NA	13872	NM_001190804	67838	Mm.37516	NM_026400	ENSMUSG00000004460	Dnajb11	1810031F23Rik|ABBP-2|AL024055|Dj9|ERdj3|ERj3p	DnaJ heat shock protein family (Hsp40) member B11	protein-coding	0.035000	0.457711	
mm_146303.1	chr18	80255153	80255353	+	1	NA	NA	NA	8	NM_001164420	66943	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.010000	0.557214	
mm_90462.1	chr10	127759660	127759860	+	1	NA	NA	NA	-3	NM_080436	107605	Mm.484271	NM_080436	ENSMUSG00000089789	Rdh1	-	retinol dehydrogenase 1 (all trans)	protein-coding	0.000000	0.457711	
mm_34305.1	chr4	141793620	141793820	+	1	NA	NA	NA	108	NM_001277932	12371	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	0.120000	0.766169	
mm_105811.1	chr11	110951812	110952012	-	1	NA	NA	NA	-16121	NM_010604	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.015000	0.417910	
mm_136955.1	chr17	14945434	14945634	+	1	NA	NA	NA	2350	NM_026451	67912	Mm.390949	NM_026451	ENSMUSG00000050088	1600012H06Rik	-	RIKEN cDNA 1600012H06 gene	protein-coding	0.000000	0.393035	
mm_136845.1	chr17	12765262	12765462	+	1	NA	NA	NA	4344	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.010000	0.407960	
mm_19540.1	chr2	94730635	94730835	-	1	NA	NA	NA	-292549	NM_001305258	11800	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0.025000	0.482587	
mm_108258.1	chr12	78356640	78356840	+	1	NA	NA	NA	130085	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.010000	0.393035	-97(CTTTATATAGCT,+,0.00),-34(CTGTTTATAAGC,-,0.00),-10(TGCTTTTAAAAC,-,0.00),-9(GCTTTTAAAACT,+,0.00),-8(CTTTTAAAACTG,+,0.00)
mm_172113.1	chr6	3200892	3201092	+	1	NA	NA	NA	-87527	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.045000	0.517413	
mm_108158.1	chr12	76329179	76329379	+	1	NA	NA	NA	4388	NM_001101471	238276	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.005000	0.547264	
mm_52616.1	chr6	117173844	117174044	+	1	NA	NA	NA	5409	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.015000	0.492537	
mm_149187.1	chr19	9914457	9914657	+	1	NA	NA	NA	-15024	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.010000	0.452736	
mm_131252.1	chr16	10690148	10690348	+	1	NA	NA	NA	95288	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.015000	0.597015	
mm_151940.1	chr19	5800754	5800954	-	1	NA	NA	NA	1818	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.437811	
mm_111541.1	chr12	100887932	100888132	-	1	NA	NA	NA	11492	NM_001177674	238377	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.030000	0.522388	
mm_100040.1	chr11	114998272	114998472	+	1	NA	NA	NA	3508	NM_134158	140497	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0.005000	0.507463	
mm_1483.1	chr1	71615410	71615610	+	1	NA	NA	NA	37724	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.015000	0.477612	
mm_155851.1	chrX	101274125	101274325	+	1	NA	NA	NA	134	NM_021521	59024	Mm.20873	NM_021521	ENSMUSG00000079487	Med12	230kDa|Mopa|OPA-1|Tnrc11|Trap230	mediator complex subunit 12	protein-coding	0.095000	0.716418	
mm_11354.1	chr2	30913270	30913470	+	1	NA	NA	NA	-10073	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.015000	0.527363	
mm_140953.1	chr17	24608897	24609097	-	1	NA	NA	NA	23630	NM_011647	22084	Mm.30435	NM_011647	ENSMUSG00000002496	Tsc2	Nafld|Tcs2	tuberous sclerosis 2	protein-coding	0.030000	0.572139	
mm_135251.1	chr16	37621823	37622023	-	1	NA	NA	NA	32445	NM_026610	68194	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.020000	0.477612	
mm_168728.1	chr12	112795673	112795873	-	1	NA	NA	NA	-13202	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.065000	0.636816	
mm_141013.1	chr17	25015647	25015847	-	1	NA	NA	NA	-339	NM_134126	106633	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	0.135000	0.711443	
mm_103443.1	chr11	76027664	76027864	-	1	NA	NA	NA	18	NM_029658	76566	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	0.150000	0.805970	
mm_84577.1	chr9	69300303	69300503	-	1	NA	NA	NA	10562	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.020000	0.457711	
mm_41937.1	chr5	105702070	105702270	+	1	NA	NA	NA	1360	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.010000	0.477612	
mm_71101.1	chr8	35376557	35376757	+	1	NA	NA	NA	916	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.080000	0.666667	
mm_88266.1	chr10	74096060	74096260	+	1	NA	NA	NA	274293	NM_001142735	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0.005000	0.298507	
mm_126512.1	chr15	81811370	81811570	+	1	NA	NA	NA	56	NM_017376	21685	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.115000	0.711443	
mm_30591.1	chr4	6357577	6357777	+	1	NA	NA	NA	-8003	NM_016807	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.010000	0.388060	
mm_156555.1	chrX	151800948	151801148	+	1	NA	NA	NA	-2234	NM_021523	59026	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	0.045000	0.646766	
mm_96141.1	chr11	60945139	60945339	+	1	NA	NA	NA	13182	NM_008928	26397	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0.010000	0.437811	
mm_111213.1	chr12	84400838	84401038	-	1	NA	NA	NA	-4	NM_001286049	12499	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0.000000	0.447761	
mm_171157.1	chr3	22297790	22297990	-	1	NA	NA	NA	46520	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0.010000	0.502488	-32(CCTTTTATAAGC,+,0.00),-32(CCTTTTATAAGC,-,0.00)
mm_150958.1	chr19	46395284	46395484	+	1	NA	NA	NA	351	NM_016860	54130	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0.040000	0.542289	-37(GGCTCTAAGAGA,-,0.00)
mm_91074.1	chr10	19009381	19009581	-	1	NA	NA	NA	2482	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.015000	0.427861	
mm_46188.1	chr5	97925579	97925779	-	1	NA	NA	NA	105283	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.010000	0.402985	
mm_26155.1	chr3	138143830	138144030	+	1	NA	NA	NA	392	NM_175389	108943	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	0.105000	0.636816	
mm_141272.1	chr17	27797473	27797673	-	1	NA	NA	NA	22969	NM_001033279	224647	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0.025000	0.557214	
mm_163730.1	chr13	119623704	119623904	+	1	NA	NA	NA	-15	NM_020279	56838	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.015000	0.562189	
mm_119455.1	chr14	47001286	47001486	+	1	NA	NA	NA	46	NM_001163433	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.020000	0.492537	
mm_164883.1	chr18	60386096	60386296	+	1	NA	NA	NA	10167	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.000000	0.333333	
mm_85967.1	chr9	112155914	112156114	-	1	NA	NA	NA	29935	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.010000	0.462687	
mm_167408.1	chr8	104795137	104795337	+	1	NA	NA	NA	-36407	NM_198171	234669	Mm.443387	NM_198171	ENSMUSG00000050097	Ces2b	-	carboxyesterase 2B	protein-coding	0.035000	0.537313	
mm_103235.1	chr11	70683561	70683761	-	1	NA	NA	NA	4444	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.000000	0.502488	
mm_69241.1	chr7	127806532	127806732	-	1	NA	NA	NA	6023	NM_001040684	101502	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	0.015000	0.522388	
mm_129888.1	chr15	83489580	83489780	-	1	NA	NA	NA	21227	NM_178869	319953	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0.075000	0.562189	
mm_121497.1	chr14	121878675	121878875	+	1	NA	NA	NA	169	NM_026861	68889	Mm.441151	NM_026861	ENSMUSG00000041765	Ubac2	1190008A14Rik|AW554959|Phgdhl1	ubiquitin associated domain containing 2	protein-coding	0.080000	0.721393	
mm_172371.1	chr7	125418456	125418656	-	1	NA	NA	NA	-26064	NM_029842	77035	Mm.307239	NM_029842	ENSMUSG00000030752	Kdm8	3110005O21Rik|Jmjd5	lysine (K)-specific demethylase 8	protein-coding	0.005000	0.611940	
mm_87384.1	chr10	44852490	44852690	+	1	NA	NA	NA	-214624	NM_011156	19072	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.045000	0.507463	
mm_105038.1	chr11	100584600	100584800	-	1	NA	NA	NA	8809	NM_001146318	12799	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.000000	0.482587	
mm_22784.1	chr3	22076661	22076861	+	1	NA	NA	NA	109	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.135000	0.756219	
mm_158872.1	chrY	1286333	1286533	-	1	NA	NA	NA	180	NM_012008	26900	Mm.302938	NM_012008	ENSMUSG00000069045	Ddx3y	8030469F12Rik|D1Pas1-rs1|Dby	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	protein-coding	0.035000	0.437811	
mm_35728.1	chr4	44710870	44711070	-	1	NA	NA	NA	-530	NM_008782	18507	Mm.439659	NM_008782	ENSMUSG00000014030	Pax5	BSAP|EBB-1|KLP|Pax-5	paired box 5	protein-coding	0.075000	0.666667	-35(CCCTATAAAAGT,-,0.00)
mm_1219.1	chr1	62730236	62730436	+	1	NA	NA	NA	27019	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.005000	0.417910	
mm_169997.1	chr17	16394782	16394982	-	1	NA	NA	NA	-568296	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.030000	0.402985	-50(TTCTTTATAAAC,-,0.00),-48(CTTTATAAACCA,+,0.00)
mm_95258.1	chr11	44658817	44659017	+	1	NA	NA	NA	40817	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.005000	0.398010	
mm_7160.1	chr1	91650619	91650819	-	1	NA	NA	NA	109639	NM_023046	65247	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	0.015000	0.522388	
mm_15047.1	chr2	152847935	152848135	+	1	NA	NA	NA	71	NM_028109	72119	Mm.407737	NM_028109	ENSMUSG00000027469	Tpx2	2610005B21Rik|DIL2|REPP86|p100	TPX2, microtubule-associated	protein-coding	0.075000	0.567164	
mm_91155.1	chr10	20505510	20505710	-	1	NA	NA	NA	42718	NM_001347366	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.030000	0.547264	
mm_82603.1	chr9	21367298	21367498	-	1	NA	NA	NA	-473	NM_001042708	16201	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.045000	0.512438	
mm_98716.1	chr11	96318638	96318838	+	1	NA	NA	NA	471	NM_010459	15412	Mm.3546	NM_010459	ENSMUSG00000038692	Hoxb4	Hox-2.6	homeobox B4	protein-coding	0.040000	0.447761	
mm_126725.1	chr15	85462641	85462841	+	1	NA	NA	NA	40486	NM_001256072	328577	Mm.212960	NM_001256072	ENSMUSG00000096607	7530416G11Rik	-	RIKEN cDNA 7530416G11 gene	protein-coding	0.010000	0.457711	
mm_72037.1	chr8	70808289	70808489	+	1	NA	NA	NA	-60	NM_008353	16161	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	0.005000	0.487562	
mm_125132.1	chr15	30333740	30333940	+	1	NA	NA	NA	161247	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.000000	0.442786	
mm_69806.1	chr7	141215551	141215751	-	1	NA	NA	NA	-209	NM_025886	66985	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	0.065000	0.636816	
mm_109465.1	chr12	111274569	111274769	+	1	NA	NA	NA	3573	NM_033603	93835	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0.115000	0.731343	
mm_66841.1	chr7	48882253	48882453	-	1	NA	NA	NA	-1312	NM_001013368	108961	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.035000	0.472637	88(GCTCATAAAAGG,-,0.00)
mm_27231.1	chr3	36453466	36453666	-	1	NA	NA	NA	21958	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.015000	0.502488	
mm_17294.1	chr2	26237258	26237458	-	1	NA	NA	NA	41	NM_153559	227638	Mm.116769	NM_153559	ENSMUSG00000036327	Qsox2	BC030934|Qscn6l1|Soxn	quiescin Q6 sulfhydryl oxidase 2	protein-coding	0.140000	0.721393	
mm_167887.1	chrX	58884373	58884573	-	1	NA	NA	NA	-26988	NM_023774	75352	Mm.60906	NM_023774	ENSMUSG00000046180	4930550L24Rik	mage-k1	RIKEN cDNA 4930550L24 gene	protein-coding	0.000000	0.472637	
mm_97955.1	chr11	83709009	83709209	+	1	NA	NA	NA	105	NM_007969	14038	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	0.005000	0.437811	
mm_92194.1	chr10	68127386	68127586	-	1	NA	NA	NA	147888	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.010000	0.388060	
mm_121158.1	chr14	102981353	102981553	+	1	NA	NA	NA	1179	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.065000	0.626866	
mm_108729.1	chr12	87388554	87388754	+	1	NA	NA	NA	-299	NM_011479	20773	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.025000	0.547264	
mm_93070.1	chr10	89257719	89257919	-	1	NA	NA	NA	-29	NR_102339	320091	Mm.236464	NM_178773	ENSMUSG00000035189	Ano4	A330096O15Rik|Gm65|Tmem16d	anoctamin 4	protein-coding	0.020000	0.572139	
mm_45544.1	chr5	72868341	72868541	-	1	NA	NA	NA	7	NM_001113461	21682	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.115000	0.706468	
mm_128634.1	chr15	59081997	59082197	-	1	NA	NA	NA	-71	NM_144800	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.185000	0.781095	
mm_69398.1	chr7	132307048	132307248	-	1	NA	NA	NA	-8516	NR_028578	100043682	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	ENSMUSG00000073814	predicted gene 10584	ncRNA	0.010000	0.432836	
mm_165072.1	chr19	44918350	44918550	+	1	NA	NA	NA	-12669	NM_001081225	226151	Mm.212609	NM_172638	ENSMUSG00000036097	Fam178a	3632432H19|6030443O07Rik|AU014917|Slf2	family with sequence similarity 178, member A	protein-coding	0.015000	0.437811	
mm_70452.1	chr8	11782367	11782567	+	1	NA	NA	NA	24137	NM_001113518	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.020000	0.507463	
mm_110241.1	chr12	31075230	31075430	-	1	NA	NA	NA	1362	NM_027828	104943	Mm.248938	NM_027828	ENSMUSG00000036136	Fam110c	9030611O19Rik|AU019489	family with sequence similarity 110, member C	protein-coding	0.020000	0.517413	
mm_40860.1	chr5	73558240	73558440	+	1	NA	NA	NA	67314	NM_178896	100737	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.020000	0.383085	
mm_43047.1	chr5	124075993	124076193	+	1	NA	NA	NA	19705	NM_019875	56325	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.045000	0.601990	
mm_150305.1	chr19	34570272	34570472	+	1	NA	NA	NA	-13157	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.005000	0.492537	
mm_2221.1	chr1	90203904	90204104	+	1	NA	NA	NA	24	NM_007722	12778	Mm.6522	NM_007722	ENSMUSG00000044337	Ackr3	AW541270|CXC-R7|CXCR-7|Cmkor1|Cxcr7|RDC-1|Rdc1	atypical chemokine receptor 3	protein-coding	0.030000	0.562189	-35(GTATATAAAAGG,-,0.00)
mm_86994.1	chr10	26229653	26229853	+	1	NA	NA	NA	46	NM_001115154	268288	Mm.213322	NM_001013766	ENSMUSG00000051354	Samd3	Gm623	sterile alpha motif domain containing 3	protein-coding	0.015000	0.457711	
mm_62123.1	chr7	96797217	96797417	+	1	NA	NA	NA	4232	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA	0.040000	0.601990	
mm_41561.1	chr5	93105888	93106088	+	1	NA	NA	NA	12572	NM_001347377	52398	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.010000	0.393035	
mm_68855.1	chr7	126369413	126369613	-	1	NA	NA	NA	55	NM_010689	16797	Mm.10280	NM_010689	ENSMUSG00000030742	Lat	p36-38|pp36	linker for activation of T cells	protein-coding	0.040000	0.651741	
mm_139898.1	chr17	70852701	70852901	+	1	NA	NA	NA	731	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.060000	0.631841	
mm_150615.1	chr19	40945386	40945586	+	1	NA	NA	NA	49049	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.020000	0.547264	
mm_37854.1	chr4	132212159	132212359	-	1	NA	NA	NA	-3	NM_145393	213541	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0.175000	0.786070	
mm_148606.1	chr19	5308269	5308469	+	1	NA	NA	NA	10038	NM_001024717	545276	Mm.447174	NM_001024717	ENSMUSG00000047658	Gal3st3	-	galactose-3-O-sulfotransferase 3	protein-coding	0.005000	0.462687	
mm_133002.1	chr16	55966292	55966492	+	1	NA	NA	NA	117	NM_024218	68193	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0.060000	0.567164	-32(TGCCCTATAAGG,-,0.00)
mm_113257.1	chr13	28142383	28142583	+	1	NA	NA	NA	-1	NM_023746	28078	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0.015000	0.462687	
mm_52722.1	chr6	119922097	119922297	+	1	NA	NA	NA	19499	NM_001166381	19365	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.005000	0.522388	
mm_112459.1	chr13	5866319	5866519	+	1	NA	NA	NA	4930	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.005000	0.472637	
mm_165831.1	chr3	152147282	152147482	+	1	NA	NA	NA	18518	NM_016867	54120	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.020000	0.472637	
mm_66106.1	chr7	31041452	31041652	-	1	NA	NA	NA	287	NM_001111073	18301	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	0.020000	0.567164	
mm_87881.1	chr10	61689546	61689746	+	1	NA	NA	NA	-5868	NM_001272090	71767	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	0.020000	0.487562	-48(CTATTTATACCC,+,0.00)
mm_67627.1	chr7	84151894	84152094	-	1	NA	NA	NA	-101	NM_133722	70178	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.175000	0.830846	
mm_58974.1	chr7	19024275	19024475	+	1	NA	NA	NA	-2	NM_026605	68188	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	0.160000	0.771144	
mm_23924.1	chr3	83766080	83766280	+	1	NA	NA	NA	-141	NM_009144	20319	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0.070000	0.646766	
mm_93765.1	chr10	120201115	120201315	-	1	NA	NA	NA	322	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.040000	0.552239	
mm_8302.1	chr1	144002179	144002379	-	1	NA	NA	NA	1870	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.020000	0.422886	17(GCGTTTTTAAAG,-,0.00),19(GTTTTTAAAGTC,+,0.00)
mm_103010.1	chr11	69695980	69696180	-	1	NA	NA	NA	18	NM_011614	21944	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0.030000	0.611940	
mm_55016.1	chr6	48840665	48840865	-	1	NA	NA	NA	223	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.020000	0.562189	
mm_45666.1	chr5	77211067	77211267	-	1	NA	NA	NA	38	NM_001289767	69982	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0.035000	0.512438	
mm_70809.1	chr8	23035051	23035251	+	1	NA	NA	NA	52	NM_001277284	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.040000	0.631841	
mm_41162.1	chr5	87932296	87932496	+	1	NA	NA	NA	6763	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.015000	0.343284	
mm_63415.1	chr7	127470262	127470462	+	1	NA	NA	NA	-1252	NM_145589	233895	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.015000	0.517413	
mm_137531.1	chr17	27555481	27555681	+	1	NA	NA	NA	-993	NM_001166536	15361	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0.095000	0.731343	
mm_6469.1	chr1	74037030	74037230	-	1	NA	NA	NA	87317	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.105000	0.746269	
mm_154106.1	chr19	57118762	57118962	-	1	NA	NA	NA	162	NM_001347459	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.015000	0.587065	
mm_42824.1	chr5	122093758	122093958	+	1	NA	NA	NA	-7122	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.055000	0.577114	
mm_30580.1	chr4	5472343	5472543	+	1	NA	NA	NA	-159885	NR_038183	73872	Mm.427301	NR_038183	ENSMUSG00000086066	4930423M02Rik	-	RIKEN cDNA 4930423M02 gene	ncRNA	0.010000	0.407960	-28(TCCTATATAAAC,-,0.00)
mm_65955.1	chr7	30428462	30428662	-	1	NA	NA	NA	5258	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.010000	0.512438	
mm_39899.1	chr5	31220672	31220872	+	1	NA	NA	NA	-227	NM_008014	14208	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	0.080000	0.646766	
mm_153792.1	chr19	45998126	45998326	-	1	NA	NA	NA	262	NM_198296	71617	Mm.210949	NM_198296	ENSMUSG00000039901	9130011E15Rik	AI431055|AW050122	RIKEN cDNA 9130011E15 gene	protein-coding	0.105000	0.736318	
mm_147128.1	chr18	36067533	36067733	-	1	NA	NA	NA	-38570	NR_015571	74966	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA	0.000000	0.432836	
mm_9003.1	chr1	165836393	165836593	-	1	NA	NA	NA	47812	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.005000	0.432836	
mm_99268.1	chr11	101246830	101247030	+	1	NA	NA	NA	596	NM_019444	54409	Mm.260698	NM_019444	ENSMUSG00000001240	Ramp2	-	receptor (calcitonin) activity modifying protein 2	protein-coding	0.015000	0.552239	
mm_26651.1	chr3	154192929	154193129	+	1	NA	NA	NA	137531	NM_010713	16875	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.035000	0.592040	
mm_42201.1	chr5	112325346	112325546	+	1	NA	NA	NA	-923	NM_018783	54723	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	0.020000	0.537313	
mm_18367.1	chr2	59882405	59882605	-	1	NA	NA	NA	101	NM_001159636	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.085000	0.716418	
mm_50469.1	chr6	48986804	48987004	+	1	NA	NA	NA	43	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.015000	0.462687	
mm_11085.1	chr2	27744610	27744810	+	1	NA	NA	NA	34127	NM_001290482	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.035000	0.577114	
mm_117450.1	chr13	74808434	74808634	-	1	NA	NA	NA	226	NM_001301153	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.095000	0.691542	
mm_96215.1	chr11	62457377	62457577	+	1	NA	NA	NA	-145	NM_177229	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.135000	0.721393	
mm_93459.1	chr10	110456105	110456305	-	1	NA	NA	NA	-144445	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA	0.030000	0.557214	
mm_91652.1	chr10	42578208	42578408	-	1	NA	NA	NA	5280	NM_152229	21907	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	0.060000	0.601990	
mm_95005.1	chr11	31900692	31900892	+	1	NA	NA	NA	29852	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.000000	0.363184	
mm_63366.1	chr7	127090670	127090870	+	1	NA	NA	NA	-666	NM_178901	101602	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	0.030000	0.552239	
mm_34662.1	chr4	150866960	150867160	+	1	NA	NA	NA	11969	NM_133753	74155	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.025000	0.547264	
mm_151982.1	chr19	5834830	5835030	-	1	NA	NA	NA	10548	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.005000	0.383085	
mm_124171.1	chr14	93797855	93798055	-	1	NA	NA	NA	90933	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.010000	0.363184	
mm_102546.1	chr11	61331614	61331814	-	1	NA	NA	NA	11146	NM_001033542	380701	Mm.340166	NM_001033542	ENSMUSG00000069855	Slc47a2	4933429E10Rik	solute carrier family 47, member 2	protein-coding	0.005000	0.328358	
mm_35041.1	chr4	4138723	4138923	-	1	NA	NA	NA	-378	NM_001002927	18619	Mm.475097	NM_001002927	ENSMUSG00000045573	Penk	AI326464|ENK|PPA|Penk1	preproenkephalin	protein-coding	0.145000	0.736318	
mm_173143.1	chrX	21853417	21853617	-	1	NA	NA	NA	138617	NM_020049	56774	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	0.035000	0.502488	
mm_50951.1	chr6	58644115	58644315	+	1	NA	NA	NA	47543	NM_011920	26357	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP-binding cassette, sub-family G (WHITE), member 2	protein-coding	0.000000	0.363184	
mm_101108.1	chr11	11932795	11932995	-	1	NA	NA	NA	-34751	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.010000	0.388060	
mm_75861.1	chr8	70723456	70723656	-	1	NA	NA	NA	-508	NM_001310465	110385	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	0.015000	0.562189	
mm_61651.1	chr7	80406468	80406668	+	1	NA	NA	NA	-1132	NM_001081454	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.000000	0.338308	
mm_33567.1	chr4	132075507	132075707	+	1	NA	NA	NA	-294	NM_001128607	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.030000	0.477612	
mm_29947.1	chr3	132950094	132950294	-	1	NA	NA	NA	97	NM_001287102	114249	Mm.279310	NM_033525	ENSMUSG00000040998	Npnt	1110009H02Rik|AA682063|AI314031|Nctn|POEM	nephronectin	protein-coding	0.165000	0.830846	
mm_8077.1	chr1	135585274	135585474	-	1	NA	NA	NA	-19	NM_173437	215690	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.090000	0.706468	
mm_30424.1	chr3	152668041	152668241	-	1	NA	NA	NA	-1	NM_001081277	229949	Mm.207057	NM_001081277	ENSMUSG00000039058	Ak5	-	adenylate kinase 5	protein-coding	0.180000	0.830846	
mm_86091.1	chr9	114982641	114982841	-	1	NA	NA	NA	-48754	NM_175380	333433	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	0.035000	0.497512	
mm_43451.1	chr5	136136140	136136340	+	1	NA	NA	NA	95	NM_001347492	72041	Mm.486605	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	0.080000	0.562189	
mm_109905.1	chr12	7979275	7979475	-	1	NA	NA	NA	1698	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.030000	0.537313	
mm_90016.1	chr10	115358678	115358878	+	1	NA	NA	NA	3484	NM_133683	67226	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0.025000	0.512438	
mm_36838.1	chr4	106617120	106617320	-	1	NA	NA	NA	18	NM_183182	242602	Mm.235591	NM_183182	ENSMUSG00000054362	Lexm	-	lymphocyte expansion molecule	protein-coding	0.070000	0.656716	
mm_167267.1	chr8	30919962	30920162	+	1	NA	NA	NA	-169600	NM_025869	66959	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0.005000	0.412935	
mm_153774.1	chr19	45742791	45742991	-	1	NA	NA	NA	-7	NM_001166362	14179	Mm.4012	NM_010205	ENSMUSG00000025219	Fgf8	Aigf|Fgf-8	fibroblast growth factor 8	protein-coding	0.120000	0.771144	
mm_150144.1	chr19	31868713	31868913	+	1	NA	NA	NA	52	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.020000	0.417910	
mm_37914.1	chr4	132783346	132783546	-	1	NA	NA	NA	12918	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.020000	0.457711	
mm_51233.1	chr6	71377209	71377409	+	1	NA	NA	NA	3882	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.005000	0.482587	
mm_129680.1	chr15	81399686	81399886	-	1	NA	NA	NA	-92	NM_133726	70356	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	0.075000	0.626866	
mm_67220.1	chr7	74501013	74501213	-	1	NA	NA	NA	53667	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.005000	0.343284	
mm_165868.1	chr4	34950567	34950767	-	1	NA	NA	NA	-39186	NR_040652	73696	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0.000000	0.348259	
mm_82251.1	chr9	4795928	4796128	-	1	NA	NA	NA	206	NM_001113180	14802	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.050000	0.606965	14(GGGCATAAAAAG,-,0.00)
mm_141040.1	chr17	25274186	25274386	-	1	NA	NA	NA	24	NM_011665	22196	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|F830028O17Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	0.080000	0.631841	
mm_145875.1	chr18	65472940	65473140	+	1	NA	NA	NA	42043	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.030000	0.378109	
mm_5328.1	chr1	23397461	23397661	-	1	NA	NA	NA	-14386	NM_001081079	70155	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0.005000	0.412935	-47(TCCCTGAAAAGG,-,0.00)
mm_159887.1	chr6	28261431	28261631	-	1	NA	NA	NA	70	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.160000	0.776119	
mm_83242.1	chr9	42399681	42399881	-	1	NA	NA	NA	148	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.035000	0.427861	
mm_147431.1	chr18	46357038	46357238	-	1	NA	NA	NA	-45210	NM_001160399	240261	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.030000	0.422886	
mm_128229.1	chr15	36595197	36595397	-	1	NA	NA	NA	13676	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.000000	0.343284	
mm_39659.1	chr5	24995942	24996142	+	1	NA	NA	NA	-289	NM_001310480	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.025000	0.507463	
mm_16670.1	chr2	6722112	6722312	-	1	NA	NA	NA	-550	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.015000	0.517413	
mm_59813.1	chr7	29170756	29170956	+	1	NA	NA	NA	466	NM_182696	243897	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	0.025000	0.517413	
mm_103891.1	chr11	83575006	83575206	-	1	NA	NA	NA	3530	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.000000	0.437811	
mm_103859.1	chr11	83298758	83298958	-	1	NA	NA	NA	119	NM_134025	103737	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding	0.120000	0.676617	
mm_113678.1	chr13	42785081	42785281	+	1	NA	NA	NA	75600	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.005000	0.393035	
mm_15448.1	chr2	157392637	157392837	+	1	NA	NA	NA	25143	NM_026968	69161	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	0.000000	0.522388	
mm_39769.1	chr5	30013740	30013940	+	1	NA	NA	NA	726	NM_031168	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.000000	0.398010	
mm_133629.1	chr16	91647750	91647950	+	1	NA	NA	NA	26	NM_178880	20658	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	0.090000	0.616915	
mm_46485.1	chr5	105131970	105132170	-	1	NA	NA	NA	7482	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.333333	
mm_169276.1	chr13	92354530	92354730	-	1	NA	NA	NA	-153	NM_010049	13361	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0.090000	0.706468	
mm_83064.1	chr9	37552588	37552788	-	1	NA	NA	NA	57	NM_022029	64011	Mm.335065	NM_022029	ENSMUSG00000053310	Nrgn	0710001B06Rik|AI838505|NG|NG/RC3|Pss1|R75334|RC3	neurogranin	protein-coding	0.070000	0.641791	
mm_128779.1	chr15	66801455	66801655	-	1	NA	NA	NA	30274	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.015000	0.507463	-92(CCCCTTTTAAGA,-,0.00),-90(CCTTTTAAGAAG,+,0.00)
mm_47255.1	chr5	121660288	121660488	-	1	NA	NA	NA	122	NM_028037	71985	Mm.45423	NM_028037	ENSMUSG00000029456	Acad10	2410021P16Rik	acyl-Coenzyme A dehydrogenase family, member 10	protein-coding	0.060000	0.577114	
mm_165725.1	chr3	103914143	103914343	+	1	NA	NA	NA	123	NM_172684	229675	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0.090000	0.641791	
mm_104134.1	chr11	86859993	86860193	-	1	NA	NA	NA	-52433	NM_026191	67487	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.025000	0.557214	
mm_36105.1	chr4	58803657	58803857	-	1	NA	NA	NA	-18037	NM_146920	258922	Mm.223327	NM_146920	ENSMUSG00000043385	Olfr267	MOR262-1	olfactory receptor 267	protein-coding	0.020000	0.353234	
mm_158992.1	chr1	134846284	134846484	-	1	NA	NA	NA	-42663	NR_015606	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.025000	0.517413	
mm_105391.1	chr11	103373992	103374192	-	1	NA	NA	NA	-10400	NM_001205236	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.025000	0.507463	
mm_149717.1	chr19	21653461	21653661	+	1	NA	NA	NA	252	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.155000	0.815920	
mm_109111.1	chr12	105453918	105454118	+	1	NA	NA	NA	162	NM_001252508	268595	Mm.2388	NM_001252508	ENSMUSG00000094910	D430019H16Rik	AI852661	RIKEN cDNA D430019H16 gene	protein-coding	0.095000	0.701493	
mm_167165.1	chr7	135806711	135806911	-	1	NA	NA	NA	-90432	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.020000	0.437811	
mm_79515.1	chr9	57521238	57521438	+	1	NA	NA	NA	106	NM_007747	12858	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.140000	0.751244	
mm_76087.1	chr8	79399379	79399579	-	1	NA	NA	NA	-11	NM_008539	17125	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.130000	0.721393	
mm_169201.1	chr13	66312129	66312329	+	1	NA	NA	NA	128889	NM_183119	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.015000	0.512438	
mm_113681.1	chr13	42838637	42838837	+	1	NA	NA	NA	-27510	NM_001302636	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.030000	0.412935	
mm_87116.1	chr10	33256453	33256653	+	1	NA	NA	NA	-196	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.005000	0.323383	-4(CCTTTTATAGCA,+,0.00)
mm_74518.1	chr8	8969682	8969882	-	1	NA	NA	NA	162506	NR_045854	71249	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	0.035000	0.572139	
mm_49252.1	chr6	17339386	17339586	+	1	NA	NA	NA	31846	NM_001243064	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.015000	0.412935	
mm_134942.1	chr16	31201097	31201297	-	1	NA	NA	NA	41	NM_030138	78618	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.115000	0.751244	
mm_169331.1	chr14	118182036	118182236	-	1	NA	NA	NA	45009	NM_021434	58245	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0.040000	0.417910	
mm_167793.1	chr9	123924580	123924780	-	1	NA	NA	NA	44012	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.090000	0.706468	
mm_10211.1	chr2	5683617	5683817	+	1	NA	NA	NA	-7671	NM_001290376	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.005000	0.442786	-33(GGCTATAAATAC,-,0.00)
mm_1145.1	chr1	60746353	60746553	+	1	NA	NA	NA	65	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.000000	0.502488	
mm_21984.1	chr2	167543531	167543731	-	1	NA	NA	NA	5436	NM_011427	20613	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	0.015000	0.527363	
mm_20252.1	chr2	126500553	126500753	-	1	NA	NA	NA	-9100	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	0.015000	0.502488	
mm_66657.1	chr7	45714588	45714788	-	1	NA	NA	NA	519	NM_020011	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.020000	0.557214	
mm_70214.1	chr7	144931853	144932053	-	1	NA	NA	NA	182	NR_039539	100628615		NR_039539	ENSMUSG00000092633	Mir3962	mmu-mir-3962|mu-mir-3962	microRNA 3962	ncRNA	0.015000	0.557214	-49(CCTTATAGATGG,+,0.00)
mm_17466.1	chr2	28557978	28558178	-	1	NA	NA	NA	5325	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.020000	0.507463	
mm_50928.1	chr6	57654345	57654545	+	1	NA	NA	NA	37633	NM_025574	66459	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	0.005000	0.368159	
mm_106557.1	chr11	120627991	120628191	-	1	NA	NA	NA	-3089	NM_153056	209011	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	0.025000	0.517413	
mm_5730.1	chr1	45312879	45313079	-	1	NA	NA	NA	1441	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.000000	0.477612	
mm_151599.1	chr19	3521709	3521909	-	1	NA	NA	NA	53940	NM_001164159	52036	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.005000	0.417910	
mm_10640.1	chr2	20547364	20547564	+	1	NA	NA	NA	27951	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.015000	0.462687	
mm_97905.1	chr11	83437593	83437793	+	1	NA	NA	NA	-1	NM_025492	66330	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	0.000000	0.522388	73(GGCTAGAAAGGG,-,0.00)
mm_153379.1	chr19	40376592	40376792	-	1	NA	NA	NA	25618	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.035000	0.661692	
mm_57770.1	chr6	129236955	129237155	-	1	NA	NA	NA	990	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.000000	0.452736	
mm_30641.1	chr4	8821693	8821893	+	1	NA	NA	NA	131387	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.020000	0.487562	
mm_152325.1	chr19	9945770	9945970	-	1	NA	NA	NA	-34730	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.015000	0.452736	
mm_94145.1	chr10	128740004	128740204	-	1	NA	NA	NA	3952	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.010000	0.368159	
mm_7747.1	chr1	131066214	131066414	-	1	NA	NA	NA	31529	NM_008551	17164	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.015000	0.393035	
mm_18467.1	chr2	62411215	62411415	-	1	NA	NA	NA	916	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.025000	0.527363	
mm_85392.1	chr9	103259406	103259606	-	1	NA	NA	NA	28791	NM_027918	71775	Mm.18802	NM_027918	ENSMUSG00000033688	1300017J02Rik	Ica|mICA	RIKEN cDNA 1300017J02 gene	protein-coding	0.020000	0.572139	
mm_53236.1	chr6	127453535	127453735	+	1	NA	NA	NA	8	NM_001346512	101187	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.100000	0.646766	
mm_91216.1	chr10	21844761	21844961	-	1	NA	NA	NA	-37323	NM_001161845	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.025000	0.497512	
mm_80755.1	chr9	95554319	95554519	+	1	NA	NA	NA	-5398	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.010000	0.407960	
mm_146827.1	chr18	21651907	21652107	-	1	NA	NA	NA	361	NM_001081403	225266	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	0.045000	0.646766	
mm_56232.1	chr6	90661959	90662159	-	1	NA	NA	NA	42813	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.005000	0.278607	
mm_170645.1	chr19	9515660	9515860	-	1	NA	NA	NA	43488	NR_073559	619371	Mm.316894	NM_001030317		Stxbp3-ps	Munc18c(L)|Stxbp3-1|Stxbp3b	syntaxin-binding protein 3, pseudogene	pseudo	0.020000	0.562189	-33(CCCCTTATAAGC,-,0.00),-31(CCTTATAAGCAC,+,0.00)
mm_7319.1	chr1	99791732	99791932	-	1	NA	NA	NA	19067	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0.000000	0.442786	
mm_22485.1	chr3	5400949	5401149	+	1	NA	NA	NA	175199	NM_001163301	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.015000	0.512438	
mm_40156.1	chr5	35582964	35583164	+	1	NA	NA	NA	4	NM_030721	80911	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	0.065000	0.641791	
mm_62122.1	chr7	96754704	96754904	+	1	NA	NA	NA	46745	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA	0.015000	0.417910	
mm_40784.1	chr5	67360272	67360472	+	1	NA	NA	NA	53417	NM_001310629	109108	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	0.000000	0.472637	
mm_43071.1	chr5	124446603	124446803	+	1	NA	NA	NA	-1	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.030000	0.621891	-91(CGCCCTAAATGC,-,0.00),-89(CCCTAAATGCGC,+,0.00)
mm_130382.1	chr15	97856545	97856745	-	1	NA	NA	NA	-12143	NM_001204278	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.000000	0.537313	
mm_63117.1	chr7	122671309	122671509	+	1	NA	NA	NA	-335	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.050000	0.567164	
mm_30098.1	chr3	138460152	138460352	-	1	NA	NA	NA	17159	NM_007410	11532	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	0.015000	0.363184	
mm_46238.1	chr5	99218446	99218646	-	1	NA	NA	NA	34381	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.020000	0.452736	
mm_106196.1	chr11	116842739	116842939	-	1	NA	NA	NA	610	NM_033398	107817	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	0.080000	0.641791	
mm_114740.1	chr13	83738957	83739157	+	1	NA	NA	NA	243	NR_029545	723967		NR_029545	ENSMUSG00000065424	Mir9-2	Mirn9-2|mir-9-2|mmu-mir-9-2	microRNA 9-2	ncRNA	0.020000	0.363184	
mm_73917.1	chr8	119666405	119666605	+	1	NA	NA	NA	140	NM_023395	67866	Mm.87599	NM_023395	ENSMUSG00000023336	Wfdc1	2310058A03Rik|ps20	WAP four-disulfide core domain 1	protein-coding	0.030000	0.606965	
mm_30222.1	chr3	145032863	145033063	-	1	NA	NA	NA	-187	NM_017474	23844	Mm.33483	NM_017474	ENSMUSG00000028255	Clca1	Clca2|Clca3|gob-5|gob5	chloride channel accessory 1	protein-coding	0.000000	0.393035	35(CCATTTAGGGTC,+,0.00)
mm_82843.1	chr9	31168726	31168926	-	1	NA	NA	NA	-37027	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.020000	0.487562	24(CCCCTTTAAAGG,-,0.00),25(CCCTTTAAAGGA,+,0.00),25(CCCTTTAAAGGA,-,0.00),26(CCTTTAAAGGAG,+,0.00)
mm_3743.1	chr1	155558072	155558272	+	1	NA	NA	NA	52	NM_026683	72482	Mm.288249	NM_026683	ENSMUSG00000033701	Acbd6	0610010G04Rik|2610100E10Rik	acyl-Coenzyme A binding domain containing 6	protein-coding	0.090000	0.636816	
mm_109776.1	chr12	119030697	119030897	+	1	NA	NA	NA	-64376	NM_029961	77706	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0.000000	0.398010	
mm_7617.1	chr1	126830280	126830480	-	1	NA	NA	NA	252	NM_001081756	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.025000	0.512438	
mm_163980.1	chr14	55951248	55951448	-	1	NA	NA	NA	1023	NR_028284	17223	Mm.437339	NR_028284		Mcpt-ps1	MMCP-(Y)1|Mmcpy1	mast cell protease, pseudogene 1	pseudo	0.005000	0.522388	
mm_122445.1	chr14	45287754	45287954	-	1	NA	NA	NA	30718	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.040000	0.477612	
mm_24111.1	chr3	88142712	88142912	+	1	NA	NA	NA	440	NM_001310593	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.150000	0.766169	
mm_71268.1	chr8	40918938	40919138	+	1	NA	NA	NA	-7195	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.015000	0.467662	86(GTGTTTATAAAC,-,0.00),88(GTTTATAAACAC,+,0.00)
mm_170025.1	chr17	21650536	21650736	+	1	NA	NA	NA	25	NM_001166497	73229	Mm.296733	NM_001166497	ENSMUSG00000035868	Zfp983	3110052M02Rik|mszf57|mszf71	zinc finger protein 983	protein-coding	0.025000	0.557214	
mm_128831.1	chr15	67903002	67903202	-	1	NA	NA	NA	355754	NM_001145888	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.005000	0.487562	
mm_121060.1	chr14	87416670	87416870	+	1	NA	NA	NA	187	NM_001253755	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0.075000	0.562189	
mm_144678.1	chr18	34758766	34758966	+	1	NA	NA	NA	-40	NM_175104	66306	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	0.030000	0.522388	
mm_40176.1	chr5	36000257	36000457	+	1	NA	NA	NA	107038	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	0.005000	0.373134	-59(TGCTTTTAAAGA,-,0.00),-58(GCTTTTAAAGAA,+,0.00)
mm_117667.1	chr13	93598299	93598499	-	1	NA	NA	NA	39359	NM_016668	12116	Mm.329582	NM_016668	ENSMUSG00000074768	Bhmt	-	betaine-homocysteine methyltransferase	protein-coding	0.025000	0.472637	-82(GCGTCTATAGGG,-,0.00)
mm_64328.1	chr7	142211694	142211894	+	1	NA	NA	NA	-23	NM_001347555	105243090	Mm.440541	NM_001347555	ENSMUSG00000073786	LOC105243090	-	keratin-associated protein 5-5-like	protein-coding	0.005000	0.507463	-32(GGATATAAAAGC,-,0.00)
mm_63456.1	chr7	127530127	127530327	+	1	NA	NA	NA	2330	NR_034045	100217442	Mm.451113	NR_034045	ENSMUSG00000065259	Snora30	MBI-26	small nucleolar RNA, H/ACA box 30	snoRNA	0.005000	0.482587	
mm_66505.1	chr7	45092056	45092256	-	1	NA	NA	NA	57	NM_026555	52377	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0.035000	0.621891	
mm_49858.1	chr6	38513842	38514042	+	1	NA	NA	NA	6617	NR_106130	102466843		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	0.020000	0.427861	
mm_138190.1	chr17	34269071	34269271	+	1	NA	NA	NA	5944	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.010000	0.522388	
mm_81926.1	chr9	120174935	120175135	+	1	NA	NA	NA	25293	NM_001039364	17433	Mm.486167	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.015000	0.482587	
mm_11541.1	chr2	32646494	32646694	+	1	NA	NA	NA	-1	NM_007932	13805	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	0.030000	0.666667	
mm_167689.1	chr9	86743565	86743765	+	1	NA	NA	NA	32	NM_178738	244954	Mm.257629	NM_178738	ENSMUSG00000033491	Prss35	6030424L22Rik|P3D9	protease, serine 35	protein-coding	0.045000	0.656716	
mm_166584.1	chr6	53469439	53469639	+	1	NA	NA	NA	-103835	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.015000	0.393035	
mm_73015.1	chr8	93966944	93967144	+	1	NA	NA	NA	45596	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.045000	0.487562	
mm_43083.1	chr5	124447091	124447291	+	1	NA	NA	NA	487	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.020000	0.467662	
mm_86221.1	chr9	120110656	120110856	-	1	NA	NA	NA	357	NM_144793	208638	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0.090000	0.671642	
mm_170853.1	chr2	178170468	178170668	-	1	NA	NA	NA	-4781	NM_001177791	74189	Mm.44413	NM_028806	ENSMUSG00000027525	Phactr3	1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224	phosphatase and actin regulator 3	protein-coding	0.000000	0.462687	
mm_57803.1	chr6	129385381	129385581	-	1	NA	NA	NA	22	NM_027709	71183	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	0.015000	0.442786	-83(TCCTTGAAAAGG,-,0.00)
mm_66278.1	chr7	37769571	37769771	-	1	NA	NA	NA	81	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.060000	0.537313	
mm_117047.1	chr13	58365094	58365294	-	1	NA	NA	NA	-10332	NM_175214	75050	Mm.446094	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	0.010000	0.472637	
mm_27257.1	chr3	37312342	37312542	-	1	NA	NA	NA	4	NM_145825	207175	Mm.344708	NM_145825	ENSMUSG00000045031	Cetn4	-	centrin 4	protein-coding	0.105000	0.666667	
mm_52624.1	chr6	117174049	117174249	+	1	NA	NA	NA	5614	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.030000	0.557214	
mm_6427.1	chr1	73937228	73937428	-	1	NA	NA	NA	-72862	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.020000	0.592040	
mm_61514.1	chr7	78895847	78896047	+	1	NA	NA	NA	20	NM_001162939	68048	Mm.34109	NM_026531	ENSMUSG00000030609	Aen	2700083B06Rik|Isg20l1	apoptosis enhancing nuclease	protein-coding	0.070000	0.621891	
mm_19783.1	chr2	106974303	106974503	-	1	NA	NA	NA	-6	NM_001025102	212772	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	0.085000	0.681592	
mm_115823.1	chr13	20228338	20228538	-	1	NA	NA	NA	137931	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.010000	0.517413	
mm_17414.1	chr2	27247182	27247382	-	1	NA	NA	NA	21	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.025000	0.601990	
mm_106817.1	chr12	7980491	7980691	+	1	NA	NA	NA	2914	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.000000	0.467662	-35(CCTTAAAGAGGT,+,0.00)
mm_31.1	chr1	6214762	6214962	+	1	NA	NA	NA	200	NM_009826	12421	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	0.150000	0.766169	
mm_113049.1	chr13	23621762	23621962	+	1	NA	NA	NA	696	NM_015787	50709	Mm.170587	NM_015787	ENSMUSG00000051627	Hist1h1e	H1-4|H1.4|H1e|H1f4|H1s-4|H1var2	histone cluster 1, H1e	protein-coding	0.025000	0.482587	
mm_1443.1	chr1	67220465	67220665	+	1	NA	NA	NA	97538	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.025000	0.457711	
mm_108315.1	chr12	79574951	79575151	+	1	NA	NA	NA	277700	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.005000	0.368159	
mm_36163.1	chr4	60582053	60582253	-	1	NA	NA	NA	2	NM_001122647	100039008	Mm.335875	NM_001122647	ENSMUSG00000078680	Mup10	2610016E04Rik|Mup8	major urinary protein 10	protein-coding	0.005000	0.437811	-35(GATTATATAAGG,-,0.00)
mm_12323.1	chr2	69392891	69393091	+	1	NA	NA	NA	12529	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.015000	0.447761	
mm_37580.1	chr4	126323621	126323821	-	1	NA	NA	NA	1478	NM_011902	24084	Mm.23895	NM_011902	ENSMUSG00000028845	Tekt2	AU014974|tektin-t	tektin 2	protein-coding	0.020000	0.537313	
mm_152430.1	chr19	10677911	10678111	-	1	NA	NA	NA	60	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.005000	0.517413	
mm_156781.1	chrX	161716964	161717164	+	1	NA	NA	NA	28	NM_001103367	24004	Mm.328503	NM_198409	ENSMUSG00000043518	Rai2	3f8	retinoic acid induced 2	protein-coding	0.060000	0.651741	
mm_78930.1	chr9	45086540	45086740	+	1	NA	NA	NA	7457	NM_001005421	270152	Mm.190461	NM_001005421	ENSMUSG00000048534	Amica1	AMICA|Crea7|Gm638|Jaml	adhesion molecule, interacts with CXADR antigen 1	protein-coding	0.010000	0.472637	
mm_118710.1	chr14	22181596	22181796	+	1	NA	NA	NA	161984	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.010000	0.462687	-58(CACTCTTAAAGG,-,0.00)
mm_66043.1	chr7	30671443	30671643	-	1	NA	NA	NA	62	NR_027849	74927	Mm.87326	NM_183108	ENSMUSG00000049761	Pmis2	1700071L20Rik|4930479M11Rik	Pmis2, sperm specific protein	ncRNA	0.035000	0.497512	
mm_52101.1	chr6	97869282	97869482	+	1	NA	NA	NA	-60435	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.467662	
mm_172214.1	chr6	60504493	60504693	+	1	NA	NA	NA	-100886	NR_015565	208079	Mm.131226	NM_177329	ENSMUSG00000046764	A530053G22Rik	-	RIKEN cDNA A530053G22 gene	ncRNA	0.000000	0.472637	
mm_121874.1	chr14	21047851	21048051	-	1	NA	NA	NA	4491	NM_018829	55946	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.005000	0.388060	
mm_147656.1	chr18	60525995	60526195	-	1	NA	NA	NA	-126	NM_026302	67665	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	0.085000	0.616915	
mm_133941.1	chr16	3907641	3907841	-	1	NA	NA	NA	948	NM_028484	73261	Mm.486226	NM_028484	ENSMUSG00000005983	1700037C18Rik	2810022L20Rik	RIKEN cDNA 1700037C18 gene	protein-coding	0.000000	0.567164	
mm_167850.1	chrX	7923082	7923282	+	1	NA	NA	NA	3360	NM_013892	30052	Mm.4881	NM_013892	ENSMUSG00000039278	Pcsk1n	AI848336|KEP|PEN|PEN19|PEN20|Pan3|SAAS|SAASCT|bLEN|lLEN|proSAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding	0.040000	0.646766	
mm_139692.1	chr17	57425034	57425234	+	1	NA	NA	NA	66448	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.407960	
mm_111389.1	chr12	88021177	88021377	-	1	NA	NA	NA	66797	NM_001270792	100039087	Mm.458830	NM_001270792	ENSMUSG00000096276	Gm2042	-	predicted gene 2042	protein-coding	0.000000	0.477612	
mm_83991.1	chr9	57443000	57443200	-	1	NA	NA	NA	-2986	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.020000	0.512438	
mm_120274.1	chr14	63125387	63125587	+	1	NA	NA	NA	3025	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.462687	
mm_113980.1	chr13	52096636	52096836	+	1	NA	NA	NA	-5	NR_045061	74050	Mm.84860	NR_045061		4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.025000	0.577114	
mm_82132.1	chr9	123529707	123529907	+	1	NA	NA	NA	-75	NM_030692	83493	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.120000	0.751244	
mm_153906.1	chr19	47131963	47132163	-	1	NA	NA	NA	6231	NM_133746	72691	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	0.005000	0.497512	
mm_126801.1	chr15	87544195	87544395	+	1	NA	NA	NA	-4	NM_001252310	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.180000	0.835821	
mm_68335.1	chr7	106504850	106505050	-	1	NA	NA	NA	-63877	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.452736	
mm_134480.1	chr16	18621554	18621754	-	1	NA	NA	NA	749	NM_001001999	14724	Mm.475622	NM_010327	ENSMUSG00000050761	Gp1bb	-	glycoprotein Ib, beta polypeptide	protein-coding	0.080000	0.641791	
mm_129818.1	chr15	83031009	83031209	-	1	NA	NA	NA	-1159	NM_001271413	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.010000	0.427861	
mm_125615.1	chr15	61987274	61987474	+	1	NA	NA	NA	2033	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.040000	0.557214	
mm_15794.1	chr2	164426038	164426238	+	1	NA	NA	NA	17050	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.055000	0.547264	
mm_141236.1	chr17	27436851	27437051	-	1	NA	NA	NA	66582	NM_001013385	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.010000	0.527363	
mm_131766.1	chr16	22892699	22892899	+	1	NA	NA	NA	784	NM_001276449	11625	Mm.197554	NM_013465	ENSMUSG00000022868	Ahsg	-	alpha-2-HS-glycoprotein	protein-coding	0.005000	0.407960	
mm_62096.1	chr7	96210045	96210245	+	1	NA	NA	NA	-492	NM_011858	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.105000	0.731343	
mm_63403.1	chr7	127297514	127297714	+	1	NA	NA	NA	1354	NM_001253874	16408	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.015000	0.582090	
mm_27891.1	chr3	79287103	79287303	-	1	NA	NA	NA	-58173	NM_001142953	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.155000	0.756219	
mm_105735.1	chr11	109297976	109298176	-	1	NA	NA	NA	105	NM_001165934	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0.075000	0.631841	
mm_1324.1	chr1	65100575	65100775	+	1	NA	NA	NA	2688	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.035000	0.517413	20(TCTCATAAAGCC,+,0.00)
mm_155644.1	chrX	85269472	85269672	+	1	NA	NA	NA	19895	NM_028046	71996	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	0.040000	0.587065	
mm_4482.1	chr1	173444481	173444681	+	1	NA	NA	NA	23977	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.005000	0.412935	
mm_29255.1	chr3	107219654	107219854	-	1	NA	NA	NA	1978	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.020000	0.547264	
mm_99272.1	chr11	101255621	101255821	+	1	NA	NA	NA	2014	NM_026776	28084	Mm.301020	NM_026776	ENSMUSG00000078656	Vps25	1110020N13Rik|AW107467|D11Wsu68e	vacuolar protein sorting 25	protein-coding	0.000000	0.467662	
mm_118219.1	chr13	110280914	110281114	-	1	NA	NA	NA	-808	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding	0.030000	0.567164	
mm_129487.1	chr15	78773330	78773530	-	1	NA	NA	NA	15	NM_008595	17305	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.035000	0.691542	
mm_86262.1	chr9	121675007	121675207	-	1	NA	NA	NA	29922	NM_001164562	215474	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.015000	0.462687	
mm_43622.1	chr5	138161605	138161805	+	1	NA	NA	NA	603	NM_012002	26893	Mm.3981	NM_012002	ENSMUSG00000019494	Cops6	Sgn3|VIP/MOV34	COP9 signalosome subunit 6	protein-coding	0.040000	0.487562	
mm_35069.1	chr4	6763802	6764002	-	1	NA	NA	NA	226821	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.005000	0.218905	
mm_108774.1	chr12	89812528	89812728	+	1	NA	NA	NA	145	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.030000	0.567164	
mm_47370.1	chr5	122951742	122951942	-	1	NA	NA	NA	37257	NM_001003953	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.070000	0.646766	
mm_145251.1	chr18	52486059	52486259	+	1	NA	NA	NA	20466	NM_026040	67222	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	0.010000	0.467662	
mm_75400.1	chr8	46208354	46208554	-	1	NA	NA	NA	2555	NM_007450	11739	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	0.035000	0.547264	
mm_50245.1	chr6	42353430	42353630	+	1	NA	NA	NA	3702	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.015000	0.517413	
mm_171032.1	chr2	90804201	90804401	+	1	NA	NA	NA	21557	NM_178755	271813	Mm.61146	NM_178755	ENSMUSG00000040812	Agbl2	4930524K04|A430081C19Rik|CCP2	ATP/GTP binding protein-like 2	protein-coding	0.005000	0.388060	-29(GCCTTTTTAAGA,-,0.00)
mm_49620.1	chr6	30803119	30803319	+	1	NA	NA	NA	61920	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.005000	0.502488	
mm_55572.1	chr6	71394916	71395116	-	1	NA	NA	NA	21589	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.005000	0.472637	
mm_20564.1	chr2	131080498	131080698	-	1	NA	NA	NA	6167	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.020000	0.606965	
mm_163860.1	chr14	19418586	19418786	-	1	NA	NA	NA	183901	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.035000	0.358209	
mm_85337.1	chr9	102626120	102626320	-	1	NA	NA	NA	-76	NM_181394	69010	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	0.145000	0.741294	
mm_33058.1	chr4	123201148	123201348	+	1	NA	NA	NA	-305	NM_001085502	230718	Mm.354635	NM_001085502	ENSMUSG00000054958	Nt5c1a	Cn1a|Gm49	5'-nucleotidase, cytosolic IA	protein-coding	0.045000	0.562189	
mm_165033.1	chr19	34252487	34252687	-	1	NA	NA	NA	2786	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.030000	0.557214	
mm_79321.1	chr9	52584681	52584881	+	1	NA	NA	NA	94656	NM_178906	330941	Mm.335160	NM_177907	ENSMUSG00000078307	AI593442	E130102D23	expressed sequence AI593442	protein-coding	0.010000	0.502488	
mm_67167.1	chr7	73551976	73552176	-	1	NA	NA	NA	6319	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.005000	0.308458	1(CTTTTTAGAGAT,+,0.00)
mm_20527.1	chr2	130906226	130906426	-	1	NA	NA	NA	70	NR_015523	613258	Mm.271990	NR_015523		A730017L22Rik	-	RIKEN cDNA A730017L22 gene	ncRNA	0.090000	0.651741	
mm_128890.1	chr15	73184817	73185017	-	1	NA	NA	NA	30	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.175000	0.815920	
mm_165216.1	chr2	38351406	38351606	+	1	NA	NA	NA	198	NM_010710	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.110000	0.736318	
mm_62383.1	chr7	100831281	100831481	+	1	NA	NA	NA	32032	NM_177073	320100	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.020000	0.517413	
mm_33836.1	chr4	135686192	135686392	+	1	NA	NA	NA	-165	NM_174851	242700	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	0.035000	0.512438	
mm_19368.1	chr2	91182847	91183047	-	1	NA	NA	NA	100	NM_001177719	228355	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0.155000	0.771144	
mm_126129.1	chr15	78335157	78335357	+	1	NA	NA	NA	9267	NM_007780	12983	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.005000	0.552239	
mm_45674.1	chr5	77216163	77216363	-	1	NA	NA	NA	-4792	NM_001289768	69982	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0.015000	0.537313	
mm_106286.1	chr11	118202627	118202827	-	1	NA	NA	NA	10015	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.050000	0.646766	
mm_85259.1	chr9	99408118	99408318	-	1	NA	NA	NA	28494	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.010000	0.412935	
mm_136507.1	chr16	96980033	96980233	-	1	NA	NA	NA	190602	NM_031174	13508	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	Down syndrome cell adhesion molecule	protein-coding	0.035000	0.462687	
mm_30664.1	chr4	10874473	10874673	+	1	NA	NA	NA	75	NM_026005	67157	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	0.130000	0.651741	
mm_124845.1	chr15	9436017	9436217	+	1	NA	NA	NA	89	NM_029341	75568	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	0.015000	0.472637	
mm_17630.1	chr2	31036689	31036889	-	1	NA	NA	NA	54510	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.005000	0.492537	
mm_164459.1	chr16	57397626	57397826	+	1	NA	NA	NA	44449	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.020000	0.507463	
mm_87954.1	chr10	63099687	63099887	+	1	NA	NA	NA	-369	NM_016864	53404	Mm.228661	NM_016864	ENSMUSG00000036816	Atoh7	Math5|bHLHa13	atonal bHLH transcription factor 7	protein-coding	0.040000	0.572139	
mm_77721.1	chr8	126816997	126817197	-	1	NA	NA	NA	128824	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.010000	0.363184	-1(GCTTAAAAACTC,+,0.00)
mm_60211.1	chr7	43444023	43444223	+	1	NA	NA	NA	51	NR_075104	110826	Mm.30200	NM_026695	ENSMUSG00000004610	Etfb	0610009I16Rik|2810441H06Rik	electron transferring flavoprotein, beta polypeptide	protein-coding	0.090000	0.611940	
mm_124615.1	chr15	3279477	3279677	+	1	NA	NA	NA	8600	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.020000	0.512438	
mm_55980.1	chr6	85902161	85902361	-	1	NA	NA	NA	272	NM_001145895	75541	Mm.24454	NM_029331	ENSMUSG00000068299	Nat8f4	1700019G17Rik	N-acetyltransferase 8 (GCN5-related) family member 4	protein-coding	0.005000	0.487562	
mm_8620.1	chr1	156037344	156037544	-	1	NA	NA	NA	-964	NM_001160018	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.025000	0.442786	
mm_134933.1	chr16	31140440	31140640	-	1	NA	NA	NA	-59108	NM_198626	268880	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.015000	0.447761	
mm_112434.1	chr13	4614027	4614227	+	1	NA	NA	NA	-4963	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.025000	0.447761	
mm_131809.1	chr16	22918206	22918406	+	1	NA	NA	NA	-76	NM_001083905	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.015000	0.457711	42(AGATATAAAAGG,-,0.00)
mm_97006.1	chr11	70884676	70884876	+	1	NA	NA	NA	40015	NM_001291142	54189	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0.010000	0.402985	
mm_27596.1	chr3	59131032	59131232	-	1	NA	NA	NA	-14	NM_001287122	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.015000	0.437811	
mm_21776.1	chr2	164846767	164846967	-	1	NA	NA	NA	10841	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.045000	0.587065	
mm_67317.1	chr7	79596591	79596791	-	1	NA	NA	NA	20966	NM_019799	56315	Mm.10909	NM_019799	ENSMUSG00000030549	Rhcg	BB065800	Rhesus blood group-associated C glycoprotein	protein-coding	0.000000	0.407960	
mm_94125.1	chr10	128670654	128670854	-	1	NA	NA	NA	3164	NM_173733	211389	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	0.020000	0.577114	
mm_8109.1	chr1	135871788	135871988	-	1	NA	NA	NA	31027	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.010000	0.522388	
mm_47937.1	chr5	135349919	135350119	-	1	NA	NA	NA	25	NM_001277893	94244	Mm.26037	NM_033571	ENSMUSG00000040013	Fkbp6	1700008G22Rik|36kDa|AU017274|D5Ertd724e|FKBP-36|FKBP-6	FK506 binding protein 6	protein-coding	0.120000	0.631841	
mm_162661.1	chr10	5309908	5310108	+	1	NA	NA	NA	-115301	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.005000	0.318408	
mm_140239.1	chr17	84125012	84125212	+	1	NA	NA	NA	46452	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.015000	0.512438	
mm_6938.1	chr1	85726911	85727111	-	1	NA	NA	NA	9595	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.000000	0.358209	-92(AGCTTTTTAAAG,-,0.00),-91(GCTTTTTAAAGC,-,0.00),-90(CTTTTTAAAGCA,+,0.00)
mm_78184.1	chr9	21225314	21225514	+	1	NA	NA	NA	867	NR_106127	102465769		NR_106127	ENSMUSG00000098764	Mir7667	Gm27756|mmu-mir-7667	microRNA 7667	ncRNA	0.040000	0.527363	
mm_133863.1	chr16	96361560	96361760	+	1	NA	NA	NA	-97	NM_001177887	72058	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.015000	0.552239	
mm_96681.1	chr11	69573726	69573926	+	1	NA	NA	NA	5498	NM_144824	216853	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	0.035000	0.507463	
mm_117181.1	chr13	63431502	63431702	-	1	NA	NA	NA	143	NM_001347515	14088	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	0.095000	0.606965	
mm_32408.1	chr4	106949326	106949526	+	1	NA	NA	NA	37956	NM_023672	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.030000	0.557214	
mm_153111.1	chr19	32980145	32980345	-	1	NA	NA	NA	222668	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.015000	0.482587	
mm_61260.1	chr7	66079573	66079773	+	1	NA	NA	NA	24	NM_024439	109815	Mm.482127	NM_024439	ENSMUSG00000075701	Selenos	1500011E07Rik|C78786|H-4|H-47|H4|H47|Sels|Vimp	selenoprotein S	protein-coding	0.125000	0.671642	
mm_150510.1	chr19	39023967	39024167	+	1	NA	NA	NA	17048	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.000000	0.298507	
mm_46408.1	chr5	104093133	104093333	-	1	NA	NA	NA	-15625	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.040000	0.502488	
mm_6054.1	chr1	60098077	60098277	-	1	NA	NA	NA	-43	NM_001199061	57750	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	0.065000	0.582090	
mm_49139.1	chr6	9096292	9096492	+	1	NA	NA	NA	146373	NM_008751	18231	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.005000	0.258706	
mm_151249.1	chr19	53906435	53906635	+	1	NA	NA	NA	3184	NM_001168491	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.000000	0.477612	
mm_12321.1	chr2	69381954	69382154	+	1	NA	NA	NA	1592	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.025000	0.507463	
mm_120660.1	chr14	70545128	70545328	+	1	NA	NA	NA	-23	NM_180588	72549	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	0.090000	0.636816	-60(CGCTTTAAGAGA,-,0.00),-59(GCTTTAAGAGAC,+,0.00)
mm_163422.1	chr12	80816552	80816752	+	1	NA	NA	NA	26120	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.000000	0.457711	89(CTCTTTATGAGC,-,0.00)
mm_51979.1	chr6	91904179	91904379	+	1	NA	NA	NA	46	NM_198668	381798	Mm.444785	NM_198668	ENSMUSG00000034063	4930590J08Rik	Gm1071	RIKEN cDNA 4930590J08 gene	protein-coding	0.005000	0.422886	
mm_104719.1	chr11	98101414	98101614	-	1	NA	NA	NA	-48052	NM_146028	217154	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0.015000	0.437811	
mm_152392.1	chr19	10525027	10525227	-	1	NA	NA	NA	82	NM_025333	66072	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	0.105000	0.656716	
mm_91131.1	chr10	19594627	19594827	-	1	NA	NA	NA	2778	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.005000	0.537313	
mm_166065.1	chr4	134472715	134472915	+	1	NA	NA	NA	4495	NM_019641	16765	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	0.030000	0.467662	
mm_4092.1	chr1	167308560	167308760	+	1	NA	NA	NA	-10	NM_001039483	68944	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	0.130000	0.686567	
mm_163771.1	chr13	120018065	120018265	+	1	NA	NA	NA	34039	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.010000	0.358209	
mm_98268.1	chr11	88999310	88999510	+	1	NA	NA	NA	7	NM_009546	217069	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.095000	0.671642	
mm_26093.1	chr3	136805209	136805409	+	1	NA	NA	NA	135243	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.015000	0.318408	-55(CCCTTTTTAAAC,-,0.00),-53(CTTTTTAAACAA,+,0.00)
mm_53374.1	chr6	129462774	129462974	+	1	NA	NA	NA	9905	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.393035	
mm_143623.1	chr17	78858610	78858810	-	1	NA	NA	NA	-6166	NR_003363	625054	Mm.311918	NR_003363		Gm6548	EG625054	eukaryotic translation elongation factor 1 alpha 1 pseudogene	pseudo	0.010000	0.462687	
mm_21910.1	chr2	166579525	166579725	-	1	NA	NA	NA	-93093	NR_105783	102465188		NR_105783	ENSMUSG00000098675	Mir6364	Gm27327|mmu-mir-6364	microRNA 6364	ncRNA	0.040000	0.616915	
mm_23659.1	chr3	68064303	68064503	+	1	NA	NA	NA	-399	NM_001113421	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.020000	0.492537	
mm_82663.1	chr9	22116975	22117175	-	1	NA	NA	NA	-2906	NM_170777	66126	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	0.080000	0.671642	
mm_28828.1	chr3	96401900	96402100	-	1	NA	NA	NA	12833	NR_001579	21748		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	0.110000	0.656716	
mm_145140.1	chr18	45559441	45559641	+	1	NA	NA	NA	-613	NM_080465	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.070000	0.641791	
mm_91138.1	chr10	19718688	19718888	-	1	NA	NA	NA	6201	NM_172786	237313	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	0.010000	0.477612	
mm_110238.1	chr12	30373269	30373469	-	1	NA	NA	NA	6	NM_172951	268534	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	0.075000	0.706468	
mm_87205.1	chr10	39641062	39641262	+	1	NA	NA	NA	28228	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.015000	0.537313	
mm_162893.1	chr10	111473167	111473367	+	1	NA	NA	NA	75	NM_015781	53605	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.140000	0.716418	
mm_48868.1	chr5	150522453	150522653	-	1	NA	NA	NA	-68	NM_009765	12190	Mm.236256	NM_009765	ENSMUSG00000041147	Brca2	Fancd1|RAB163	breast cancer 2, early onset	protein-coding	0.115000	0.656716	
mm_92970.1	chr10	86186460	86186660	-	1	NA	NA	NA	90706	NR_038024	78170	Mm.444790	NR_038024		4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0.005000	0.497512	
mm_167541.1	chr9	24896754	24896954	+	1	NA	NA	NA	-122551	NM_001205085	57246	Mm.31452	NM_020496	ENSMUSG00000031965	Tbx20	9430010M06Rik|AL022859|Tbx12	T-box 20	protein-coding	0.010000	0.502488	
mm_64963.1	chr7	16614699	16614899	-	1	NA	NA	NA	194	NM_172739	232906	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.150000	0.761194	
mm_18484.1	chr2	62596365	62596565	-	1	NA	NA	NA	-22444	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.015000	0.447761	89(CATTTTATAGTC,+,0.00)
mm_75154.1	chr8	36218581	36218781	-	1	NA	NA	NA	30835	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.035000	0.597015	
mm_13396.1	chr2	103970085	103970285	+	1	NA	NA	NA	-102	NM_008505	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.095000	0.651741	
mm_137856.1	chr17	31110916	31111116	+	1	NA	NA	NA	18595	NM_011575	21786	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.015000	0.522388	
mm_47271.1	chr5	121860005	121860205	-	1	NA	NA	NA	11077	NM_175474	231717	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.015000	0.373134	
mm_27910.1	chr3	79525860	79526060	-	1	NA	NA	NA	41719	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.005000	0.437811	
mm_79063.1	chr9	46230291	46230491	+	1	NA	NA	NA	1761	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.035000	0.547264	
mm_58532.1	chr7	4337623	4337823	+	1	NA	NA	NA	-1	NM_010746	17086	Mm.240231	NM_010746	ENSMUSG00000062524	Ncr1	Ly94|NKp46	natural cytotoxicity triggering receptor 1	protein-coding	0.000000	0.492537	67(CTTCATTAAAGG,-,0.00)
mm_35739.1	chr4	45320368	45320568	-	1	NA	NA	NA	135	NM_025513	66362	Mm.275788	NM_025513	ENSMUSG00000028322	Exosc3	2310005D06Rik|AI593501|Rrp40	exosome component 3	protein-coding	0.125000	0.711443	
mm_141822.1	chr17	34615905	34616105	-	1	NA	NA	NA	-34	NM_152922	81701	Mm.231343	NM_152922	ENSMUSG00000015467	Egfl8	Ng3	EGF-like domain 8	protein-coding	0.015000	0.527363	
mm_120671.1	chr14	70554298	70554498	+	1	NA	NA	NA	342	NM_021877	15460	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	0.095000	0.766169	
mm_67213.1	chr7	74408407	74408607	-	1	NA	NA	NA	146273	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.010000	0.557214	
mm_123301.1	chr14	61648685	61648885	-	1	NA	NA	NA	-16675	NR_029733	387174		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0.095000	0.611940	
mm_51418.1	chr6	78382088	78382288	+	1	NA	NA	NA	1479	NM_011259	19694	Mm.2552	NM_011259	ENSMUSG00000079516	Reg3a	AV063448	regenerating islet-derived 3 alpha	protein-coding	0.015000	0.482587	
mm_127747.1	chr15	103464480	103464680	+	1	NA	NA	NA	10755	NM_153505	105855	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	0.015000	0.512438	
mm_99789.1	chr11	107428150	107428350	+	1	NA	NA	NA	42470	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.015000	0.472637	
mm_85949.1	chr9	112113768	112113968	-	1	NA	NA	NA	4843	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.000000	0.482587	
mm_112244.1	chr12	113482488	113482688	-	1	NA	NA	NA	-6977	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.497512	
mm_48516.1	chr5	142895095	142895295	-	1	NA	NA	NA	43	NM_001033312	231863	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0.105000	0.696517	
mm_105128.1	chr11	101302160	101302360	-	1	NA	NA	NA	7	NM_019584	56208	Mm.178947	NM_019584	ENSMUSG00000035086	Becn1	4921513J16Rik|5430417M23Rik|Atg6	beclin 1, autophagy related	protein-coding	0.100000	0.656716	
mm_84352.1	chr9	64340929	64341129	-	1	NA	NA	NA	228	NM_001001295	213550	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	0.100000	0.711443	
mm_41712.1	chr5	101888093	101888293	+	1	NA	NA	NA	123063	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.065000	0.537313	
mm_51016.1	chr6	65023306	65023506	+	1	NA	NA	NA	-19261	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.005000	0.447761	-34(AACCATAAAAGC,-,0.00)
mm_33854.1	chr4	135870303	135870503	+	1	NA	NA	NA	3443	NM_026383	52830	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.000000	0.378109	
mm_130542.1	chr15	98953451	98953651	-	1	NA	NA	NA	-50	NM_011653	22142	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	0.060000	0.606965	-33(CTGTATATAAGG,-,0.00)
mm_156176.1	chrX	130337414	130337614	+	1	NA	NA	NA	587772	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.005000	0.278607	50(CCCCTTATAAGA,-,0.00)
mm_102590.1	chr11	61915073	61915273	-	1	NA	NA	NA	15084	NM_019921	56697	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0.015000	0.542289	
mm_44131.1	chr5	149831629	149831829	+	1	NA	NA	NA	-16018	NR_045758	70969	Mm.78499	NR_045758	ENSMUSG00000107214	4930500F04Rik	4931407C17Rik	RIKEN cDNA 4930500F04 gene	ncRNA	0.060000	0.557214	
mm_96462.1	chr11	67596447	67596647	+	1	NA	NA	NA	-8	NM_001277080	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.010000	0.527363	
mm_161382.1	chr14	70682519	70682719	-	1	NA	NA	NA	-29535	NM_181345	328440	Mm.347749	NM_181345	ENSMUSG00000047911	Npm2	-	nucleophosmin/nucleoplasmin 2	protein-coding	0.000000	0.427861	25(AACTTTAAAAAG,-,0.00),27(CTTTAAAAAGAG,+,0.00)
mm_6833.1	chr1	84224993	84225193	-	1	NA	NA	NA	-6132	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.020000	0.422886	
mm_60007.1	chr7	30722508	30722708	+	1	NA	NA	NA	6926	NM_027215	69804	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	0.045000	0.592040	
mm_80871.1	chr9	98864673	98864873	+	1	NA	NA	NA	6	NM_028033	71979	Mm.140843	NM_028033	ENSMUSG00000090470	Prr23a3	2410012M07Rik	proline rich 23A, member 3	protein-coding	0.030000	0.512438	
mm_109897.1	chr12	7876332	7876532	-	1	NA	NA	NA	-101245	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.527363	
mm_158660.1	chrX	157414999	157415199	-	1	NA	NA	NA	187	NM_011077	18675	Mm.2529	NM_011077	ENSMUSG00000057457	Phex	Gy|HPDR|HPDR1|Hyp|PEX	phosphate regulating endopeptidase homolog, X-linked	protein-coding	0.010000	0.417910	
mm_120080.1	chr14	57702678	57702878	+	1	NA	NA	NA	31640	NM_153382	50523	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.010000	0.437811	
mm_126157.1	chr15	78410182	78410382	+	1	NA	NA	NA	3178	NM_138670	246221	Mm.294215	NM_138670	ENSMUSG00000071711	Mpst	Mst	mercaptopyruvate sulfurtransferase	protein-coding	0.135000	0.646766	
mm_118526.1	chr14	14804039	14804239	+	1	NA	NA	NA	-16676	NM_001195229	674895	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.020000	0.547264	
mm_65250.1	chr7	19861197	19861397	-	1	NA	NA	NA	2	NM_001033419	330483	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0.030000	0.636816	
mm_112850.1	chr13	20836027	20836227	+	1	NA	NA	NA	42014	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.338308	27(CTTTTTAAAAGC,+,0.00),27(CTTTTTAAAAGC,-,0.00)
mm_124417.1	chr14	118051926	118052126	-	1	NA	NA	NA	220	NM_010024	13190	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	0.025000	0.427861	
mm_49592.1	chr6	30645162	30645362	+	1	NA	NA	NA	6044	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.005000	0.512438	61(CCCCATTTAGGC,-,0.00)
mm_74667.1	chr8	13677445	13677645	-	1	NA	NA	NA	42	NM_009025	19414	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.135000	0.751244	
mm_62684.1	chr7	110018198	110018398	+	1	NA	NA	NA	-127	NM_181517	233726	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	0.100000	0.646766	
mm_145154.1	chr18	46474849	46475049	+	1	NA	NA	NA	-9133	NR_045438	72076	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.000000	0.457711	
mm_90692.1	chr10	128971123	128971323	+	1	NA	NA	NA	-10235	NM_027853	71664	Mm.337232	NM_027853	ENSMUSG00000025347	Mettl7b	0610006F02Rik|AI266817	methyltransferase like 7B	protein-coding	0.005000	0.402985	
mm_158962.1	chr1	92596404	92596604	+	1	NA	NA	NA	-17	NM_146490	258483	Mm.271573	NM_146490	ENSMUSG00000062497	Olfr1411	MOR208-3	olfactory receptor 1411	protein-coding	0.015000	0.577114	
mm_67777.1	chr7	97211068	97211268	-	1	NA	NA	NA	114796	NM_001177412	244144	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.010000	0.398010	
mm_46944.1	chr5	114859326	114859526	-	1	NA	NA	NA	5712	NM_026263	67593	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	0.060000	0.552239	
mm_38066.1	chr4	134093706	134093906	-	1	NA	NA	NA	1267	NM_013706	23833	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	0.025000	0.502488	-18(CCCCCTTAAAGA,-,0.00),-17(CCCCTTAAAGAG,-,0.00),-15(CCTTAAAGAGTG,+,0.00)
mm_171356.1	chr4	115453887	115454087	-	1	NA	NA	NA	1383	NM_001100185	435802	Mm.466611	NM_001100185	ENSMUSG00000084346	Cyp4a30b	Cyp4a30b-ps|OTTMUSG00000008626	cytochrome P450, family 4, subfamily a, polypeptide 30b	protein-coding	0.025000	0.507463	
mm_24424.1	chr3	90537156	90537356	+	1	NA	NA	NA	-3967	NM_026416	67860	Mm.331185	NM_026416	ENSMUSG00000074457	S100a16	2300002L21Rik|AI325039|AI663996|DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding	0.010000	0.572139	-80(GTGTTTAAAAAA,-,0.00)
mm_12177.1	chr2	62968080	62968280	+	1	NA	NA	NA	216107	NM_133207	170738	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.020000	0.442786	
mm_6950.1	chr1	85864508	85864708	-	1	NA	NA	NA	-29902	NM_022417	64294	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.030000	0.577114	
mm_75982.1	chr8	72284853	72285053	-	1	NA	NA	NA	-34109	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.010000	0.492537	
mm_171638.1	chr4	23288492	23288692	+	1	NA	NA	NA	798044	NR_131335	105500046		NR_131335	ENSMUSG00000107859	Gm30731	Pnky|lnc-pou3f2	predicted gene, 30731	ncRNA	0.030000	0.462687	
mm_129121.1	chr15	76119055	76119255	-	1	NA	NA	NA	1040	NM_144848	223650	Mm.259929	NM_144848		Eppk1	6230424I18Rik|EPIPL|EPIPL1|EPPK	epiplakin 1	protein-coding	0.060000	0.606965	
mm_147765.1	chr18	61375146	61375346	-	1	NA	NA	NA	25185	NM_133249	170826	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0.000000	0.378109	
mm_13608.1	chr2	113364458	113364658	+	1	NA	NA	NA	36822	NM_010230	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.050000	0.557214	
mm_127556.1	chr15	102150953	102151153	+	1	NA	NA	NA	478	NM_146064	223920	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	0.030000	0.532338	
mm_104852.1	chr11	99322850	99323050	-	1	NA	NA	NA	-9	NM_133730	70810	Mm.268173	NM_133730	ENSMUSG00000035831	Krt25	4631426H08Rik|Ka38|Krt25a|mIRSa1	keratin 25	protein-coding	0.025000	0.492537	-34(GTCTATAAAAGG,-,0.00)
mm_85084.1	chr9	91365665	91365865	-	1	NA	NA	NA	34	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.055000	0.527363	
mm_27832.1	chr3	79126434	79126634	-	1	NA	NA	NA	18353	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.015000	0.467662	
mm_89309.1	chr10	87916333	87916533	+	1	NA	NA	NA	-50238	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.000000	0.383085	
mm_84666.1	chr9	71996206	71996406	-	1	NA	NA	NA	32865	NR_029879	723889		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.010000	0.348259	
mm_51758.1	chr6	87777998	87778198	+	1	NA	NA	NA	-38	NM_018762	54368	Mm.12897	NM_018762	ENSMUSG00000030054	Gp9	Cd42|GPIX	glycoprotein 9 (platelet)	protein-coding	0.010000	0.562189	
mm_98698.1	chr11	96303498	96303698	+	1	NA	NA	NA	86	NM_008268	15413	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	0.045000	0.427861	
mm_5385.1	chr1	31016732	31016932	-	1	NA	NA	NA	-67077	NM_011200	19243	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	0.000000	0.447761	
mm_38374.1	chr4	138457043	138457243	-	1	NA	NA	NA	1995	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.000000	0.273632	
mm_160741.1	chr10	80547838	80548038	-	1	NA	NA	NA	-8814	NM_026094	67331	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0.055000	0.656716	
mm_57441.1	chr6	124965137	124965337	-	1	NA	NA	NA	160	NM_012003	26894	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e	COP9 signalosome subunit 7A	protein-coding	0.085000	0.646766	-92(GCCTCTTTAAGG,-,0.00)
mm_60948.1	chr7	47021116	47021316	+	1	NA	NA	NA	-12802	NM_175318	101685	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.030000	0.527363	
mm_14052.1	chr2	122382845	122383045	+	1	NA	NA	NA	-14027	NM_001013829	435684	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0.005000	0.497512	
mm_97539.1	chr11	78830301	78830501	+	1	NA	NA	NA	3806	NM_001076681	66274	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0.030000	0.557214	
mm_103291.1	chr11	72411607	72411807	-	1	NA	NA	NA	6	NM_177776	276829	Mm.46732	NM_177776	ENSMUSG00000045667	Smtnl2	D130058I21Rik	smoothelin-like 2	protein-coding	0.110000	0.741294	
mm_132363.1	chr16	34745109	34745309	+	1	NA	NA	NA	-39741	NM_139300	107589	Mm.33360	NM_139300	ENSMUSG00000022836	Mylk	9530072E15Rik|A930019C19Rik|AW489456|KRP|MLCK108|MLCK210|Mlck|nmMlck|smMLCK	myosin, light polypeptide kinase	protein-coding	0.115000	0.681592	
mm_116597.1	chr13	48546381	48546581	-	1	NA	NA	NA	-8209	NR_029725	387244		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.160000	0.761194	
mm_113274.1	chr13	29664108	29664308	+	1	NA	NA	NA	191465	NR_131896	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0.005000	0.417910	
mm_143073.1	chr17	57024186	57024386	-	1	NA	NA	NA	7221	NM_010613	16549	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0.020000	0.656716	
mm_82215.1	chr9	3002901	3003101	-	1	NA	NA	NA	35742	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.030000	0.343284	
mm_70237.1	chr8	3353245	3353445	+	1	NA	NA	NA	-70	NM_001033378	319493	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0.035000	0.582090	
mm_1720.1	chr1	75360230	75360430	+	1	NA	NA	NA	38	NM_010043	13346	Mm.6712	NM_010043	ENSMUSG00000026208	Des	-	desmin	protein-coding	0.055000	0.666667	
mm_3151.1	chr1	135152718	135152918	+	1	NA	NA	NA	5984	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.025000	0.582090	
mm_88113.1	chr10	69191995	69192195	+	1	NA	NA	NA	-16457	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.000000	0.318408	
mm_116499.1	chr13	44982698	44982898	-	1	NA	NA	NA	19298	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.020000	0.606965	
mm_141415.1	chr17	29430115	29430315	-	1	NA	NA	NA	-60830	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.010000	0.378109	
mm_86020.1	chr9	112235736	112235936	-	1	NA	NA	NA	-995	NM_001177619	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.025000	0.577114	
mm_9865.1	chr1	184845766	184845966	-	1	NA	NA	NA	-19	NM_133684	67247	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0.070000	0.666667	
mm_159000.1	chr1	153425293	153425493	+	1	NA	NA	NA	184	NM_001033162	71836	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	0.105000	0.711443	
mm_5143.1	chr1	9748135	9748335	-	1	NA	NA	NA	147	NM_173443	70675	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	0.095000	0.636816	
mm_62891.1	chr7	115995176	115995376	+	1	NA	NA	NA	-190	NM_011445	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.005000	0.402985	
mm_127426.1	chr15	101267888	101268088	+	1	NA	NA	NA	1142	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.015000	0.532338	
mm_1105.1	chr1	59763623	59763823	+	1	NA	NA	NA	-556	NM_007561	12168	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0.135000	0.726368	
mm_172263.1	chr6	75296843	75297043	-	1	NA	NA	NA	-1825922	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.005000	0.462687	
mm_111792.1	chr12	104864918	104865118	-	1	NA	NA	NA	58	NR_104436	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.195000	0.865672	
mm_37104.1	chr4	116627880	116628080	-	1	NA	NA	NA	-29	NM_016777	50927	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.055000	0.512438	
mm_91057.1	chr10	18831829	18832029	-	1	NA	NA	NA	1	NR_038035	73968	Mm.55591	NR_038034		4930444F02Rik	1700010L24Rik|mpiR	RIKEN cDNA 4930444F02 gene	ncRNA	0.030000	0.582090	
mm_18633.1	chr2	69342514	69342714	-	1	NA	NA	NA	2	NM_021022	27413	Mm.439855	NM_021022	ENSMUSG00000027048	Abcb11	ABC16|Bsep|Lith1|PFIC2|PGY4|SPGP	ATP-binding cassette, sub-family B (MDR/TAP), member 11	protein-coding	0.010000	0.422886	
mm_101487.1	chr11	31370004	31370204	-	1	NA	NA	NA	-43	NM_011491	20856	Mm.32506	NM_011491	ENSMUSG00000020303	Stc2	AW125853|Stc2l|mustc2	stanniocalcin 2	protein-coding	0.075000	0.621891	
mm_8175.1	chr1	138063977	138064177	-	1	NA	NA	NA	97438	NR_029820	723890		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA	0.005000	0.348259	
mm_90749.1	chr10	5488119	5488319	-	1	NA	NA	NA	95	NM_001347711	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.015000	0.452736	
mm_11366.1	chr2	30981887	30982087	+	1	NA	NA	NA	-46	NM_144885	227707	Mm.235238	NM_144885	ENSMUSG00000026851	BC005624	-	cDNA sequence BC005624	protein-coding	0.090000	0.661692	
mm_161279.1	chr14	19602495	19602695	-	1	NA	NA	NA	-8	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.000000	0.452736	
mm_147140.1	chr18	36454402	36454602	-	1	NA	NA	NA	-7	NM_026027	67199	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0.045000	0.532338	
mm_142247.1	chr17	37483087	37483287	-	1	NA	NA	NA	342	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.025000	0.507463	
mm_111906.1	chr12	108765784	108765984	-	1	NA	NA	NA	-27427	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.030000	0.567164	
mm_88283.1	chr10	75173694	75173894	+	1	NA	NA	NA	-38279	NM_153406	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.025000	0.467662	-35(CACTTGAAAAGG,-,0.00)
mm_11444.1	chr2	32051957	32052157	+	1	NA	NA	NA	1111	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	0.030000	0.597015	
mm_150619.1	chr19	41044778	41044978	+	1	NA	NA	NA	15603	NM_009345	21673	Mm.25620	NM_009345	ENSMUSG00000025014	Dntt	Tdt	deoxynucleotidyltransferase, terminal	protein-coding	0.010000	0.437811	-57(TCTTAAAAAGTC,+,0.00)
mm_120640.1	chr14	70520946	70521146	+	1	NA	NA	NA	-786	NR_033241	12153	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.030000	0.517413	
mm_109838.1	chr12	4233870	4234070	-	1	NA	NA	NA	-57	NM_001204912	69709	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.055000	0.542289	
mm_103465.1	chr11	76437113	76437313	-	1	NA	NA	NA	30070	NM_019818	56322	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	0.060000	0.666667	
mm_44375.1	chr5	17814192	17814392	-	1	NA	NA	NA	21604	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.263682	
mm_70006.1	chr7	142397968	142398168	-	1	NA	NA	NA	-10198	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.005000	0.557214	
mm_150012.1	chr19	29366462	29366662	+	1	NA	NA	NA	-876	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.020000	0.348259	
mm_121397.1	chr14	119137735	119137935	+	1	NA	NA	NA	-430	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.140000	0.741294	
mm_30071.1	chr3	137969538	137969738	-	1	NA	NA	NA	11911	NM_011932	26377	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.010000	0.243781	
mm_74009.1	chr8	121116769	121116969	+	1	NA	NA	NA	698	NM_013519	14234	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	0.075000	0.601990	
mm_121909.1	chr14	21987902	21988102	-	1	NA	NA	NA	1599	NM_145459	218820	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.085000	0.621891	-34(GCCCATTAAAAC,-,0.00)
mm_88107.1	chr10	69151158	69151358	+	1	NA	NA	NA	-57294	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.045000	0.592040	
mm_119465.1	chr14	47276900	47277100	+	1	NA	NA	NA	-143	NM_172598	218973	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	0.105000	0.721393	
mm_89895.1	chr10	110920079	110920279	+	1	NA	NA	NA	3	NM_007792	13008	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	0.105000	0.661692	-34(GTCTTTAAAAGC,-,0.00),-33(TCTTTAAAAGCG,+,0.00)
mm_24469.1	chr3	90654166	90654366	+	1	NA	NA	NA	-36	NM_199422	381493	Mm.291525	NM_199422	ENSMUSG00000063767	S100a7a	AY465109|Gm1020|S100A7L1|S100A7f|S100a15|S100a15a|S100a17l1	S100 calcium binding protein A7A	protein-coding	0.010000	0.527363	
mm_69146.1	chr7	127091088	127091288	-	1	NA	NA	NA	-248	NM_178901	101602	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	0.015000	0.577114	
mm_25908.1	chr3	131112467	131112667	+	1	NA	NA	NA	-224	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.075000	0.592040	
mm_86688.1	chr10	18431122	18431322	+	1	NA	NA	NA	23547	NM_173390	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.035000	0.636816	
mm_34593.1	chr4	150197216	150197416	+	1	NA	NA	NA	3819	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.020000	0.507463	
mm_107810.1	chr12	65061633	65061833	+	1	NA	NA	NA	12205	NM_013902	30795	Mm.28480	NM_013902	ENSMUSG00000020949	Fkbp3	25kDa|FKBP-3|FKBP25	FK506 binding protein 3	protein-coding	0.000000	0.253731	
mm_38540.1	chr4	141586705	141586905	-	1	NA	NA	NA	13119	NM_001163256	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.020000	0.452736	5(GTTTATAAACCC,+,0.00)
mm_172716.1	chr8	70685683	70685883	+	1	NA	NA	NA	-11956	NM_010592	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.010000	0.492537	
mm_165744.1	chr3	107291203	107291403	+	1	NA	NA	NA	11	NM_146136	229699	Mm.38384	NM_146136	ENSMUSG00000027896	Slc16a4	AW146050|MCT 5	solute carrier family 16 (monocarboxylic acid transporters), member 4	protein-coding	0.020000	0.477612	
mm_121924.1	chr14	23554718	23554918	-	1	NA	NA	NA	449387	NM_001253375	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.020000	0.487562	
mm_152463.1	chr19	10920532	10920732	-	1	NA	NA	NA	-31	NM_009580	22786	Mm.24767	NM_009580	ENSMUSG00000024734	Zp1	-	zona pellucida glycoprotein 1	protein-coding	0.005000	0.552239	
mm_129793.1	chr15	82852602	82852802	-	1	NA	NA	NA	45759	NR_027799	21378	Mm.417272	NR_027799		Tbrg3	TB-11	transforming growth factor beta regulated gene 3	ncRNA	0.005000	0.502488	
mm_38324.1	chr4	137345157	137345357	-	1	NA	NA	NA	12502	NM_009861	12540	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.005000	0.368159	
mm_94601.1	chr11	12053836	12054036	+	1	NA	NA	NA	-16516	NM_010345	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.005000	0.462687	
mm_52847.1	chr6	121846630	121846830	+	1	NA	NA	NA	8189	NM_008645	17836	Mm.1311	NM_008645	ENSMUSG00000059908	Mug1	-	murinoglobulin 1	protein-coding	0.000000	0.437811	57(TGGTATTAAAGC,-,0.00)
mm_149871.1	chr19	25155699	25155899	+	1	NA	NA	NA	-81403	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.030000	0.497512	
mm_8899.1	chr1	162984426	162984626	-	1	NA	NA	NA	2	NM_008030	14262	Mm.2900	NM_008030	ENSMUSG00000026691	Fmo3	AW111792	flavin containing monooxygenase 3	protein-coding	0.000000	0.412935	
mm_13856.1	chr2	119694956	119695156	+	1	NA	NA	NA	19988	NM_030112	76246	Mm.33437	NM_030112	ENSMUSG00000027304	Rtf1	2900005O08Rik|6530416A09Rik|AI853581|AU043144|AW553985|Gtl7|cbp82	RTF1, Paf1/RNA polymerase II complex component	protein-coding	0.000000	0.373134	35(TAATTTAAAAGG,-,0.00)
mm_168430.1	chr11	33754797	33754997	-	1	NA	NA	NA	88688	NM_027398	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.070000	0.527363	46(AACTTTAAATGG,-,0.00)
mm_2343.1	chr1	92859737	92859937	+	1	NA	NA	NA	9459	NR_029559	387167		NR_029559	ENSMUSG00000065470	Mir149	Mirn149|mir-149|mmu-mir-149	microRNA 149	ncRNA	0.005000	0.432836	
mm_16159.1	chr2	172440498	172440698	+	1	NA	NA	NA	20	NM_025542	66404	Mm.25157	NM_025542	ENSMUSG00000027502	Rtfdc1	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417	replication termination factor 2 domain containing 1	protein-coding	0.105000	0.616915	
mm_96596.1	chr11	69090816	69091016	+	1	NA	NA	NA	2388	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.005000	0.412935	
mm_120907.1	chr14	76084301	76084501	+	1	NA	NA	NA	26414	NM_026177	67467	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0.005000	0.462687	
mm_42651.1	chr5	118764985	118765185	+	1	NA	NA	NA	-187254	NR_040694	74627	Mm.410828	NR_040694	ENSMUSG00000107144	4930413E15Rik	-	RIKEN cDNA 4930413E15 gene	ncRNA	0.015000	0.363184	
mm_58033.1	chr6	136714013	136714213	-	1	NA	NA	NA	-52220	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.010000	0.517413	
mm_143230.1	chr17	63451706	63451906	-	1	NA	NA	NA	48774	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.010000	0.393035	
mm_122802.1	chr14	54554265	54554465	-	1	NA	NA	NA	-4	NM_145462	219072	Mm.202152	NM_145462	ENSMUSG00000022177	Haus4	9430093H08Rik|AU016300|D14Ertd500e	HAUS augmin-like complex, subunit 4	protein-coding	0.115000	0.681592	
mm_108950.1	chr12	102354650	102354850	+	1	NA	NA	NA	71109	NM_001161365	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.005000	0.572139	
mm_113902.1	chr13	49215568	49215768	+	1	NA	NA	NA	358	NM_026738	68480	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.075000	0.646766	
mm_31574.1	chr4	57637731	57637931	+	1	NA	NA	NA	69583	NM_172868	242481	Mm.331630	NM_172868	ENSMUSG00000090053	Palm2	53-H12|B130066I24|R75368|pEN70	paralemmin 2	protein-coding	0.040000	0.562189	
mm_97911.1	chr11	83490510	83490710	+	1	NA	NA	NA	17502	NM_027427	70439	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	0.000000	0.353234	
mm_43766.1	chr5	140735440	140735640	+	1	NA	NA	NA	11413	NM_173405	231842	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.060000	0.636816	
mm_89329.1	chr10	87932682	87932882	+	1	NA	NA	NA	-33889	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.000000	0.412935	
mm_112663.1	chr13	16026989	16027189	+	1	NA	NA	NA	15238	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.477612	
mm_8261.1	chr1	139255579	139255779	-	1	NA	NA	NA	121397	NM_133239	170788	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	0.015000	0.457711	
mm_166131.1	chr4	155563169	155563369	+	1	NA	NA	NA	-546	NM_001159637	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.020000	0.457711	
mm_90777.1	chr10	6916227	6916427	-	1	NA	NA	NA	63954	NM_001347225	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.005000	0.328358	
mm_159349.1	chr3	68869724	68869924	+	1	NA	NA	NA	238	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.140000	0.761194	
mm_101344.1	chr11	23633497	23633697	-	1	NA	NA	NA	34	NM_001347242	71675	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	0.170000	0.805970	
mm_147097.1	chr18	35649479	35649679	-	1	NA	NA	NA	-212	NM_027222	69816	Mm.27252	NM_027222	ENSMUSG00000024353	Mzb1	2010001M09Rik|AV064572|PACAP|pERp1	marginal zone B and B1 cell-specific protein 1	protein-coding	0.025000	0.532338	
mm_73412.1	chr8	106052919	106053119	+	1	NA	NA	NA	-6584	NM_010901	18021	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.020000	0.477612	
mm_98651.1	chr11	96251585	96251785	+	1	NA	NA	NA	25	NR_037977	193022	Mm.169508	NR_037977		Gm53	-	predicted gene 53	ncRNA	0.115000	0.681592	
mm_63741.1	chr7	130911311	130911511	+	1	NA	NA	NA	3143	NR_106028	102466219		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0.000000	0.273632	
mm_67018.1	chr7	65635887	65636087	-	1	NA	NA	NA	-8911	NM_172310	272396	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0.010000	0.527363	
mm_85227.1	chr9	97111038	97111238	-	1	NA	NA	NA	-97	NM_138756	192287	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.110000	0.651741	
mm_136891.1	chr17	13011109	13011309	+	1	NA	NA	NA	3370	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.010000	0.398010	
mm_87571.1	chr10	56387422	56387622	+	1	NA	NA	NA	10222	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.020000	0.467662	
mm_139563.1	chr17	56990164	56990364	+	1	NA	NA	NA	0	NM_017393	53895	Mm.287892	NM_017393	ENSMUSG00000002660	Clpp	AU019820|D17Wsu160e	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding	0.075000	0.592040	
mm_139795.1	chr17	66005537	66005737	+	1	NA	NA	NA	-54450	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.020000	0.482587	
mm_57172.1	chr6	122847669	122847869	-	1	NA	NA	NA	8388	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.015000	0.462687	
mm_45241.1	chr5	53999397	53999597	-	1	NA	NA	NA	974	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.035000	0.517413	
mm_43132.1	chr5	125389171	125389371	+	1	NA	NA	NA	746	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.100000	0.611940	
mm_151974.1	chr19	5826678	5826878	-	1	NA	NA	NA	18700	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.020000	0.442786	
mm_143761.1	chr17	81625052	81625252	-	1	NA	NA	NA	113235	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.000000	0.388060	
mm_120994.1	chr14	79426332	79426532	+	1	NA	NA	NA	-79	NM_001024135	211255	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	0.090000	0.616915	
mm_130746.1	chr15	101258321	101258521	-	1	NA	NA	NA	-8425	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.010000	0.611940	
mm_142249.1	chr17	37483451	37483651	-	1	NA	NA	NA	3	NM_001347387	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.005000	0.477612	
mm_100028.1	chr11	114911965	114912165	+	1	NA	NA	NA	22024	NM_170758	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.015000	0.512438	
mm_41690.1	chr5	100570141	100570341	+	1	NA	NA	NA	1964	NM_139198	231507	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.020000	0.398010	
mm_36207.1	chr4	62434539	62434739	-	1	NA	NA	NA	87	NM_153504	76072	Mm.169565	NM_153504	ENSMUSG00000063851	Rnf183	5830442J12Rik	ring finger protein 183	protein-coding	0.005000	0.507463	
mm_96734.1	chr11	69758763	69758963	+	1	NA	NA	NA	-230	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.050000	0.512438	
mm_170300.1	chr18	33394797	33394997	+	1	NA	NA	NA	68737	NM_001267717	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.045000	0.532338	
mm_160818.1	chr11	29547807	29548007	+	1	NA	NA	NA	-43	NM_028504	73324	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	0.115000	0.631841	
mm_132578.1	chr16	38244904	38245104	+	1	NA	NA	NA	49820	NM_010936	18171	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0.010000	0.368159	-91(CACCATATAAGC,-,0.00)
mm_90582.1	chr10	128268589	128268789	+	1	NA	NA	NA	692	NM_133997	103161	Mm.26513	NM_133997	ENSMUSG00000047631	Apof	AI255964	apolipoprotein F	protein-coding	0.010000	0.527363	
mm_160022.1	chr6	130129799	130129999	-	1	NA	NA	NA	-1	NM_001101620	16639	Mm.439698	NM_010650	ENSMUSG00000089727	Klra8	Cmv-1|Cmv1|Ly49h|Ly49u<129>	killer cell lectin-like receptor, subfamily A, member 8	protein-coding	0.015000	0.452736	
mm_130427.1	chr15	98145546	98145746	-	1	NA	NA	NA	56	NM_030121	78541	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0.120000	0.711443	
mm_29489.1	chr3	115714947	115715147	-	1	NA	NA	NA	8	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.020000	0.582090	
mm_148993.1	chr19	8618072	8618272	+	1	NA	NA	NA	176	NM_008766	18399	Mm.30090	NM_008766	ENSMUSG00000024650	Slc22a6	NKT|Oat1|Orctl1|mOat1	solute carrier family 22 (organic anion transporter), member 6	protein-coding	0.020000	0.631841	
mm_115335.1	chr13	112481370	112481570	+	1	NA	NA	NA	17400	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.005000	0.373134	-90(ATCTATATAAGA,-,0.00),-80(GACTTTTAAAAG,-,0.00)
mm_114097.1	chr13	54717513	54717713	+	1	NA	NA	NA	16150	NM_001033364	268663	Mm.315382	NM_001033364	ENSMUSG00000034918	Cdhr2	Gm624|PC-LKC|Pcdh24	cadherin-related family member 2	protein-coding	0.015000	0.512438	
mm_48383.1	chr5	139774334	139774534	-	1	NA	NA	NA	1244	NM_026748	68510	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	0.045000	0.611940	
mm_150819.1	chr19	44406607	44406807	+	1	NA	NA	NA	1002	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.040000	0.532338	
mm_151476.1	chr19	58673715	58673915	+	1	NA	NA	NA	3450	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.040000	0.507463	
mm_112763.1	chr13	19352257	19352457	+	1	NA	NA	NA	43456	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.020000	0.472637	
mm_159222.1	chr2	127854523	127854723	+	1	NA	NA	NA	-5	NM_028765	74121	Mm.244835	NM_028765	ENSMUSG00000027380	Acoxl	1200014P05Rik|AV025673	acyl-Coenzyme A oxidase-like	protein-coding	0.000000	0.547264	
mm_30055.1	chr3	136669815	136670015	-	1	NA	NA	NA	-151	NM_008913	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.055000	0.671642	
mm_138717.1	chr17	36837067	36837267	+	1	NA	NA	NA	21	NM_001286726	22670	Mm.34587	NM_030698	ENSMUSG00000024457	Trim26	AI462198|Zfp173|Zfp1736	tripartite motif-containing 26	protein-coding	0.065000	0.666667	
mm_123570.1	chr14	66910968	66911168	-	1	NA	NA	NA	-140	NM_175498	239157	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	0.090000	0.716418	
mm_80734.1	chr9	94669530	94669730	+	1	NA	NA	NA	-262	NM_177909	331004	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.005000	0.462687	
mm_12263.1	chr2	68959745	68959945	+	1	NA	NA	NA	98404	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.010000	0.442786	
mm_108796.1	chr12	91588386	91588586	+	1	NA	NA	NA	1163	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.055000	0.552239	-92(GTGTTTAAATGG,-,0.00),-65(GGCCTGAAAAGC,-,0.00),-10(CTCTATATAAAC,-,0.00)
mm_24536.1	chr3	93279452	93279652	+	1	NA	NA	NA	-40197	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.010000	0.402985	
mm_84930.1	chr9	82900723	82900923	-	1	NA	NA	NA	71017	NM_022986	65099	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	0.010000	0.383085	
mm_36986.1	chr4	109666647	109666847	-	1	NA	NA	NA	9	NM_001301368	12580	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	protein-coding	0.100000	0.611940	
mm_168877.1	chr12	40884410	40884610	-	1	NA	NA	NA	-139580	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.030000	0.477612	
mm_8895.1	chr1	162898392	162898592	-	1	NA	NA	NA	220	NM_018881	55990	Mm.10929	NM_018881	ENSMUSG00000040170	Fmo2	2310008D08Rik|2310042I22Rik|AW107733	flavin containing monooxygenase 2	protein-coding	0.015000	0.417910	
mm_28022.1	chr3	83046024	83046224	-	1	NA	NA	NA	3739	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.015000	0.417910	
mm_51407.1	chr6	78373319	78373519	+	1	NA	NA	NA	2534	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.000000	0.338308	
mm_64674.1	chr7	4500746	4500946	-	1	NA	NA	NA	834	NM_029834	232807	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.025000	0.432836	-15(TCCTTGAAAAGG,-,0.00)
mm_3740.1	chr1	155161441	155161641	+	1	NA	NA	NA	2838	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.005000	0.437811	
mm_159395.1	chr3	94658738	94658938	-	1	NA	NA	NA	34	NM_001293728	22156	Mm.10214	NM_011656	ENSMUSG00000005968	Tuft1	-	tuftelin 1	protein-coding	0.115000	0.656716	
mm_32834.1	chr4	117787157	117787357	+	1	NA	NA	NA	-21591	NM_029416	75753	Mm.3848	NM_029416	ENSMUSG00000048626	Klf17	7420700M05Rik|AA420409|AU043468|C85123|D4Ertd561e|Gzf|Zfp393	Kruppel-like factor 17	protein-coding	0.015000	0.547264	
mm_151801.1	chr19	5424690	5424890	-	1	NA	NA	NA	189	NM_024176	66556	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	0.110000	0.726368	
mm_144648.1	chr18	33889391	33889591	+	1	NA	NA	NA	94599	NR_038151	69749	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.025000	0.537313	
mm_60863.1	chr7	45897317	45897517	+	1	NA	NA	NA	348	NM_144801	70209	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	0.020000	0.577114	
mm_86810.1	chr10	20341128	20341328	+	1	NA	NA	NA	-6591	NM_027930	71804	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0.005000	0.283582	15(AGCTTTTAAAGG,-,0.00),16(GCTTTTAAAGGA,+,0.00),55(TTTTTTAAAGCT,+,0.00)
mm_51708.1	chr6	86668832	86669032	+	1	NA	NA	NA	227	NM_010751	17119	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.145000	0.786070	
mm_53719.1	chr6	143642722	143642922	+	1	NA	NA	NA	8466	NR_045732	73425	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA	0.030000	0.517413	
mm_17764.1	chr2	32788332	32788532	-	1	NA	NA	NA	-4027	NM_025619	227736	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	0.050000	0.587065	
mm_60074.1	chr7	33743685	33743885	+	1	NA	NA	NA	-14	NM_001099329	100043860	Mm.389875	NM_001099329	ENSMUSG00000078753	Scgb1b24	Abpa24|Gm12769|OTTMUSG00000008385	secretoglobin, family 1B, member 24	protein-coding	0.010000	0.557214	
mm_115730.1	chr13	17743954	17744154	-	1	NA	NA	NA	-3419	NR_035412	100316665		NR_035412	ENSMUSG00000080574	Mir466i	Mirn466i|mmu-mir-466i	microRNA 466i	ncRNA	0.005000	0.368159	
mm_41440.1	chr5	90904342	90904542	+	1	NA	NA	NA	543	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.020000	0.442786	
mm_148001.1	chr18	67724197	67724397	-	1	NA	NA	NA	324	NM_001127177	19255	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	0.140000	0.751244	
mm_157523.1	chrX	50942668	50942868	-	1	NA	NA	NA	-58	NM_001190332	385354	Mm.393050	NM_001190332	ENSMUSG00000036131	Frmd7	EG665849|Gm1533	FERM domain containing 7	protein-coding	0.030000	0.587065	
mm_148664.1	chr19	5601785	5601985	+	1	NA	NA	NA	12	NM_026616	68209	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	0.065000	0.582090	
mm_130276.1	chr15	96699581	96699781	-	1	NA	NA	NA	17	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.130000	0.592040	
mm_36911.1	chr4	108051798	108051998	-	1	NA	NA	NA	-19808	NM_172874	242608	Mm.74710	NM_172874	ENSMUSG00000028600	Podn	9430070G18|Pcan|SLRR5A	podocan	protein-coding	0.020000	0.532338	
mm_129892.1	chr15	83555612	83555812	-	1	NA	NA	NA	-1	NM_001030014	223722	Mm.37560	NM_001030014	ENSMUSG00000048755	Mcat	AI225907|BC025519	malonyl CoA:ACP acyltransferase (mitochondrial)	protein-coding	0.125000	0.681592	
mm_52162.1	chr6	98020316	98020516	+	1	NA	NA	NA	28633	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.010000	0.373134	
mm_38913.1	chr4	149996306	149996506	-	1	NA	NA	NA	6830	NM_001291004	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.015000	0.517413	
mm_37506.1	chr4	123841874	123842074	-	1	NA	NA	NA	54099	NM_183163	230726	Mm.37334	NM_183163	ENSMUSG00000043333	Rhbdl2	9130416B15|RRP2	rhomboid, veinlet-like 2 (Drosophila)	protein-coding	0.050000	0.601990	
mm_144024.1	chr17	90036599	90036799	-	1	NA	NA	NA	51669	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.035000	0.447761	
mm_30998.1	chr4	40143381	40143581	+	1	NA	NA	NA	216	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.110000	0.731343	
mm_14398.1	chr2	130038363	130038563	+	1	NA	NA	NA	-22055	NR_105757	102466628		NR_105757	ENSMUSG00000098347	Mir6339	Gm27848|mmu-mir-6339	microRNA 6339	ncRNA	0.035000	0.457711	
mm_161939.1	chr19	3992709	3992909	+	1	NA	NA	NA	57	NM_011533	109575	Mm.246555	NM_011533	ENSMUSG00000037477	Tbx10	Dc|Tbx13|Tbx7	T-box 10	protein-coding	0.010000	0.582090	
mm_108226.1	chr12	77238008	77238208	+	1	NA	NA	NA	4	NM_016893	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.105000	0.691542	
mm_151931.1	chr19	5800187	5800387	-	1	NA	NA	NA	2385	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.015000	0.432836	
mm_37535.1	chr4	124936788	124936988	-	1	NA	NA	NA	29	NM_026560	52276	Mm.28038	NM_026560	ENSMUSG00000028873	Cdca8	4831429J16Rik|AU044747|BOR|Borealin|D4Ertd421e|DasraB|MESRGP	cell division cycle associated 8	protein-coding	0.050000	0.537313	
mm_117609.1	chr13	91223875	91224075	-	1	NA	NA	NA	12	NM_025770	66795	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.140000	0.761194	
mm_157136.1	chrX	9456922	9457122	-	1	NA	NA	NA	12302	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.025000	0.412935	
mm_111901.1	chr12	108761236	108761436	-	1	NA	NA	NA	-31975	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.010000	0.527363	
mm_48532.1	chr5	142904092	142904292	-	1	NA	NA	NA	2562	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.010000	0.452736	
mm_73354.1	chr8	105455182	105455382	+	1	NA	NA	NA	16140	NM_026481	67971	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0.015000	0.547264	
mm_109562.1	chr12	111944509	111944709	+	1	NA	NA	NA	-127	NR_029464	77675	Mm.98331	NR_029464		5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0.025000	0.606965	
mm_33829.1	chr4	135626596	135626796	+	1	NA	NA	NA	41	NR_027909	73937	Mm.292326	NM_028688	ENSMUSG00000086788	1700029M20Rik	4930406E24Rik	RIKEN cDNA 1700029M20 gene	ncRNA	0.045000	0.542289	
mm_37458.1	chr4	123444793	123444993	-	1	NA	NA	NA	-32982	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.010000	0.437811	
mm_156089.1	chrX	110815587	110815787	+	1	NA	NA	NA	1308	NM_008901	18994	Mm.56946	NM_008901	ENSMUSG00000056854	Pou3f4	Brn-4|Brn4|OTF-9|Otf9|Slf|oct-9	POU domain, class 3, transcription factor 4	protein-coding	0.085000	0.492537	
mm_118483.1	chr14	12189851	12190051	+	1	NA	NA	NA	8	NM_001347593	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.020000	0.532338	
mm_159024.1	chr1	173215419	173215619	+	1	NA	NA	NA	-88	NM_146881	258881	Mm.377733	NM_146881	ENSMUSG00000049456	Olfr1404	MOR267-2	olfactory receptor 1404	protein-coding	0.020000	0.492537	
mm_40197.1	chr5	36868535	36868735	+	1	NA	NA	NA	65	NM_172994	269643	Mm.41694	NM_172994	ENSMUSG00000029120	Ppp2r2c	6330548O06Rik|IMYPNO|IMYPNO1|PR52	protein phosphatase 2, regulatory subunit B, gamma	protein-coding	0.185000	0.835821	
mm_161043.1	chr12	34528331	34528531	-	1	NA	NA	NA	458	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.015000	0.502488	
mm_171127.1	chr3	144947724	144947924	+	1	NA	NA	NA	-15295	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding	0.030000	0.542289	-33(CCCCTTATAAGC,-,0.00),-31(CCTTATAAGCAC,+,0.00)
mm_76013.1	chr8	73171631	73171831	-	1	NA	NA	NA	155219	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	0.005000	0.348259	
mm_114353.1	chr13	60939887	60940087	+	1	NA	NA	NA	1948	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding	0.005000	0.388060	
mm_23547.1	chr3	61366001	61366201	+	1	NA	NA	NA	1594	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.010000	0.452736	
mm_165154.1	chr2	21986095	21986295	+	1	NA	NA	NA	-241308	NM_148413	667663	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding	0.045000	0.462687	-34(TGCTTTAAAAAG,-,0.00)
mm_165113.1	chr19	58673024	58673224	+	1	NA	NA	NA	2759	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.030000	0.417910	
mm_45560.1	chr5	73191785	73191985	-	1	NA	NA	NA	64733	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.030000	0.502488	73(TTTTTTAAAGAG,+,0.00)
mm_89752.1	chr10	99266037	99266237	+	1	NA	NA	NA	2906	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.040000	0.542289	
mm_78068.1	chr9	15306160	15306360	+	1	NA	NA	NA	46	NM_027261	75316	Mm.354115	NM_026541	ENSMUSG00000031939	Taf1d	2810003M17Rik|4930553M18Rik|5930426I11Rik|Josd3|TAF(I)41|TAFI41	TATA-box binding protein associated factor, RNA polymerase I, D	protein-coding	0.120000	0.686567	
mm_153604.1	chr19	43890501	43890701	-	1	NA	NA	NA	-10833	NM_001306088	71972	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.015000	0.522388	
mm_148223.1	chr18	80340883	80341083	-	1	NA	NA	NA	23271	NM_001190373	240444	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.000000	0.318408	
mm_120955.1	chr14	77156737	77156937	+	1	NA	NA	NA	74	NM_172813	239188	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	0.130000	0.736318	
mm_172537.1	chr7	95187891	95188091	+	1	NA	NA	NA	-983253	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.015000	0.457711	
mm_88424.1	chr10	77225624	77225824	+	1	NA	NA	NA	33499	NR_026944	100169878	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	ENSMUSG00000078444	predicted gene 10941	ncRNA	0.020000	0.507463	
mm_111839.1	chr12	107914929	107915129	-	1	NA	NA	NA	88385	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.015000	0.343284	-49(TCCTTTAAAAGA,-,0.00),-48(CCTTTAAAAGAT,+,0.00)
mm_31480.1	chr4	52439128	52439328	+	1	NA	NA	NA	7	NM_001301412	14211	Mm.2999	NM_008017	ENSMUSG00000028312	Smc2	5730502P04Rik|AI255214|AW545314|CAP-E|CAPE|Fin16|SMC-2|Smc2l1	structural maintenance of chromosomes 2	protein-coding	0.090000	0.587065	
mm_72585.1	chr8	84237222	84237422	+	1	NA	NA	NA	-280	NM_172503	212168	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	0.075000	0.616915	
mm_89687.1	chr10	97565458	97565658	+	1	NA	NA	NA	57	NM_008524	17022	Mm.18888	NM_008524	ENSMUSG00000036446	Lum	Ldc|SLRR2D	lumican	protein-coding	0.025000	0.492537	
mm_162034.1	chr19	55240887	55241087	-	1	NA	NA	NA	249	NM_001081076	73707	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.015000	0.517413	
mm_162213.1	chrX	136741655	136741855	-	1	NA	NA	NA	-146	NM_019768	56397	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	0.085000	0.666667	
mm_33256.1	chr4	127168669	127168869	+	1	NA	NA	NA	-435	NM_198618	242667	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	discs, large (Drosophila) homolog-associated protein 3	protein-coding	0.060000	0.661692	
mm_11985.1	chr2	55435803	55436003	+	1	NA	NA	NA	-67	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.040000	0.601990	
mm_103456.1	chr11	76287273	76287473	-	1	NA	NA	NA	43637	NM_183263	67390	Mm.24886	NM_183263	ENSMUSG00000038046	Rnmtl1	4833420N02Rik|AI255153|HC90|Mrm3	RNA methyltransferase like 1	protein-coding	0.010000	0.532338	
mm_131877.1	chr16	23223606	23223806	+	1	NA	NA	NA	-1034	NM_145933	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.010000	0.452736	
mm_112454.1	chr13	5864392	5864592	+	1	NA	NA	NA	3003	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.010000	0.422886	
mm_30903.1	chr4	32363838	32364038	+	1	NA	NA	NA	-53497	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.030000	0.567164	
mm_10251.1	chr2	9189471	9189671	+	1	NA	NA	NA	56	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.005000	0.412935	
mm_3525.1	chr1	150165039	150165239	+	1	NA	NA	NA	-191	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.025000	0.542289	-41(CCCTCTTAGAGG,-,0.00),-40(CCTCTTAGAGGG,+,0.00)
mm_137883.1	chr17	31591639	31591839	+	1	NA	NA	NA	26966	NM_016670	18771	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.010000	0.462687	
mm_20474.1	chr2	129515009	129515209	-	1	NA	NA	NA	21493	NM_177653	228592	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	0.005000	0.517413	
mm_126718.1	chr15	85336309	85336509	+	1	NA	NA	NA	28	NM_016843	54138	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.085000	0.676617	
mm_129032.1	chr15	74959221	74959421	-	1	NA	NA	NA	4215	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.020000	0.572139	
mm_81134.1	chr9	106514509	106514709	+	1	NA	NA	NA	36	NM_029300	75470	Mm.63799	NM_029300	ENSMUSG00000066382	Iqcf5	1700007L12Rik	IQ motif containing F5	protein-coding	0.015000	0.512438	
mm_78163.1	chr9	21028122	21028322	+	1	NA	NA	NA	-1151	NM_023892	78369	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.025000	0.537313	
mm_136765.1	chr17	8849828	8850028	+	1	NA	NA	NA	-57	NM_001347321	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.020000	0.587065	
mm_119042.1	chr14	30593341	30593541	+	1	NA	NA	NA	16869	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.020000	0.567164	-32(GCATTTAAACCA,+,0.00)
mm_110081.1	chr12	24680817	24681017	-	1	NA	NA	NA	878	NM_138686	12879	Mm.52265	NM_138686	ENSMUSG00000062563	Cys1	2900006B19Rik|AV218859|Ccap|ck|cpk	cystin 1	protein-coding	0.110000	0.751244	
mm_16423.1	chr2	180257317	180257517	+	1	NA	NA	NA	38	NM_025587	66481	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0.085000	0.671642	
mm_98863.1	chr11	97766558	97766758	+	1	NA	NA	NA	-45	NM_026186	67480	Mm.33206	NM_026186	ENSMUSG00000018541	Cwc25	1300013D05Rik|AA473636|Ccdc49|R75228	CWC25 spliceosome-associated protein	protein-coding	0.070000	0.557214	
mm_166072.1	chr4	135873655	135873855	-	1	NA	NA	NA	91	NM_026383	52830	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.100000	0.636816	
mm_27735.1	chr3	69069543	69069743	-	1	NA	NA	NA	-24901	NM_025863	66949	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.010000	0.422886	-39(TTTTTTATAGAG,+,0.00)
mm_66846.1	chr7	49634621	49634821	-	1	NA	NA	NA	2114	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.025000	0.442786	
mm_162218.1	chrX	139217041	139217241	+	1	NA	NA	NA	-25	NM_001164631	245631	Mm.131001	NM_175541	ENSMUSG00000042515	Mum1l1	9430086K21Rik	melanoma associated antigen (mutated) 1-like 1	protein-coding	0.045000	0.626866	81(CTGTCTTAAAGC,-,0.00)
mm_28915.1	chr3	98853183	98853383	-	1	NA	NA	NA	6511	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.015000	0.482587	
mm_7652.1	chr1	128324400	128324600	-	1	NA	NA	NA	3818	NM_001081078	226413	Mm.26930	NM_001081078	ENSMUSG00000026354	Lct	Gm100|LAC|LPH|Lphl	lactase	protein-coding	0.005000	0.462687	
mm_83326.1	chr9	44233235	44233435	-	1	NA	NA	NA	711	NM_007619	12402	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.030000	0.512438	32(GGGTTTAAATGG,-,0.00),34(GTTTAAATGGGG,+,0.00)
mm_161133.1	chr12	113543852	113544052	+	1	NA	NA	NA	44	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.000000	0.512438	
mm_111341.1	chr12	86884633	86884833	-	1	NA	NA	NA	81	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.140000	0.721393	
mm_157671.1	chrX	59134307	59134507	-	1	NA	NA	NA	29	NM_010200	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding	0.120000	0.746269	
mm_85596.1	chr9	107490660	107490860	-	1	NA	NA	NA	-43185	NM_019704	56395	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	0.020000	0.532338	34(CCTTAAAGACTG,+,0.00)
mm_57042.1	chr6	122340405	122340605	-	1	NA	NA	NA	-278	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.040000	0.452736	
mm_64157.1	chr7	141341966	141342166	+	1	NA	NA	NA	3064	NM_133191	98845	Mm.27451	NM_133191	ENSMUSG00000025504	Eps8l2	AI042819|AW545405|Eps8r2	EPS8-like 2	protein-coding	0.035000	0.592040	
mm_2900.1	chr1	131935201	131935401	+	1	NA	NA	NA	24843	NM_001145804	98415	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.005000	0.388060	-13(TGCTTTTTATGG,-,0.00),-11(CTTTTTATGGAG,+,0.00)
mm_169221.1	chr13	66752790	66752990	-	1	NA	NA	NA	152460	NM_026219	67530	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	0.000000	0.467662	
mm_65101.1	chr7	19303281	19303481	-	1	NA	NA	NA	6664	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.020000	0.447761	
mm_50724.1	chr6	52244932	52245132	+	1	NA	NA	NA	-211	NR_015348	15397	Mm.469918	NR_015348	ENSMUSG00000086427	Hoxa11os	Hoxa11as|Hoxa11s	homeobox A11, opposite strand	ncRNA	0.110000	0.641791	-35(GCCTTTATACGC,+,0.00)
mm_47900.1	chr5	134906635	134906835	-	1	NA	NA	NA	-2	NM_194065	76629	Mm.159750	NM_029681	ENSMUSG00000040576	Wbscr28	1700111I05Rik	Williams-Beuren syndrome chromosome region 28 (human)	protein-coding	0.015000	0.611940	
mm_9412.1	chr1	172291239	172291439	-	1	NA	NA	NA	6725	NM_178405	98660	Mm.207432	NM_178405	ENSMUSG00000007097	Atp1a2	AW060654|Atpa-3|mKIAA0778	ATPase, Na+/K+ transporting, alpha 2 polypeptide	protein-coding	0.020000	0.562189	
mm_155913.1	chrX	101961612	101961812	+	1	NA	NA	NA	109595	NM_001278534	331474	Mm.23297	NM_183318	ENSMUSG00000049191	Rgag4	6430402L03Rik|Mar5|Mart5|mKIAA2001	retrotransposon gag domain containing 4	protein-coding	0.015000	0.532338	
mm_97904.1	chr11	83437563	83437763	+	1	NA	NA	NA	-31	NM_025492	66330	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	0.005000	0.502488	-89(TTCTAGAAAAGG,-,0.00)
mm_100476.1	chr11	120150448	120150648	+	1	NA	NA	NA	803	NM_001164799	72055	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0.045000	0.487562	
mm_159577.1	chr4	117582490	117582690	+	1	NA	NA	NA	32225	NM_080469	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.020000	0.432836	
mm_40328.1	chr5	43910472	43910672	+	1	NA	NA	NA	41763	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.000000	0.338308	
mm_156101.1	chrX	112600730	112600930	+	1	NA	NA	NA	304	NM_177747	245595	Mm.259846	NM_177747	ENSMUSG00000025529	Zfp711	2810409C01Rik|A230078I01Rik|Znf711	zinc finger protein 711	protein-coding	0.110000	0.696517	
mm_138776.1	chr17	37195619	37195819	+	1	NA	NA	NA	1827	NM_023137	24108	Mm.140210	NM_023137	ENSMUSG00000035186	Ubd	FAT10	ubiquitin D	protein-coding	0.025000	0.422886	
mm_138556.1	chr17	35266923	35267123	+	1	NA	NA	NA	3900	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.000000	0.547264	
mm_48001.1	chr5	136161163	136161363	-	1	NA	NA	NA	9393	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.015000	0.497512	
mm_11327.1	chr2	30439421	30439621	+	1	NA	NA	NA	23471	NM_138748	110854	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.015000	0.492537	
mm_90503.1	chr10	128035546	128035746	+	1	NA	NA	NA	300	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.105000	0.656716	
mm_127568.1	chr15	102270460	102270660	+	1	NA	NA	NA	-8896	NM_134100	106073	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0.030000	0.636816	
mm_73228.1	chr8	104101539	104101739	+	1	NA	NA	NA	14	NM_009868	12562	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.015000	0.592040	
mm_75217.1	chr8	39605629	39605829	-	1	NA	NA	NA	36949	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.487562	
mm_48962.1	chr6	4600245	4600445	+	1	NA	NA	NA	-721	NM_145398	213819	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1	CAS1 domain containing 1	protein-coding	0.005000	0.457711	
mm_67909.1	chr7	99700957	99701157	-	1	NA	NA	NA	-5248	NM_001252531	101488	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0.010000	0.552239	
mm_28139.1	chr3	87254243	87254443	-	1	NA	NA	NA	9181	NM_030707	80891	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	0.010000	0.402985	
mm_72009.1	chr8	70703328	70703528	+	1	NA	NA	NA	5689	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.010000	0.582090	
mm_61361.1	chr7	68748107	68748307	+	1	NA	NA	NA	1031	NM_001042592	66412	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.005000	0.462687	
mm_24074.1	chr3	87921808	87922008	+	1	NA	NA	NA	2364	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.025000	0.537313	
mm_139014.1	chr17	45695328	45695528	+	1	NA	NA	NA	9056	NM_026732	68463	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	0.020000	0.537313	
mm_161659.1	chr17	8101125	8101325	-	1	NA	NA	NA	3	NM_001033442	381059	Mm.490353	NM_001033442	ENSMUSG00000095720	Gm1604b	ENSMUSG00000073470|Gm1604	predicted gene 1604b	protein-coding	0.045000	0.577114	
mm_129239.1	chr15	76639697	76639897	-	1	NA	NA	NA	132	NM_183091	72749	Mm.358749	NM_183091	ENSMUSG00000059323	Tonsl	2810439M11Rik|Nfkbil2	tonsoku-like, DNA repair protein	protein-coding	0.055000	0.626866	
mm_96282.1	chr11	62951114	62951314	+	1	NA	NA	NA	21	NM_025496	66338	Mm.46166	NM_025496	ENSMUSG00000042200	Cdrt4	1700019I23Rik	CMT1A duplicated region transcript 4	protein-coding	0.005000	0.532338	
mm_135852.1	chr16	59557293	59557493	-	1	NA	NA	NA	-1641	NM_174848	224273	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	0.025000	0.472637	
mm_77053.1	chr8	109577454	109577654	-	1	NA	NA	NA	1618	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.000000	0.517413	
mm_118672.1	chr14	22019745	22019945	+	1	NA	NA	NA	133	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.065000	0.651741	
mm_36810.1	chr4	103214751	103214951	-	1	NA	NA	NA	33	NM_177732	242585	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.145000	0.721393	
mm_156736.1	chrX	159942812	159943012	+	1	NA	NA	NA	219	NM_001290664	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.000000	0.457711	-80(TTCCTTAAAAGG,-,0.00),-79(TCCTTAAAAGGG,+,0.00),-78(CCTTAAAAGGGA,+,0.00)
mm_39299.1	chr5	5754667	5754867	+	1	NA	NA	NA	-5450	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.005000	0.402985	
mm_59858.1	chr7	29983856	29984056	+	1	NA	NA	NA	1	NM_001167872	243905	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	0.100000	0.686567	
mm_13771.1	chr2	118663172	118663372	+	1	NA	NA	NA	-305	NM_001033254	214230	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 protein (Cdc42/Rac)-activated kinase 6	protein-coding	0.040000	0.552239	
mm_85724.1	chr9	108326617	108326817	-	1	NA	NA	NA	-12363	NM_008160	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.005000	0.427861	
mm_169781.1	chr16	11144087	11144287	+	1	NA	NA	NA	-9655	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.155000	0.701493	
mm_132922.1	chr16	49781938	49782138	+	1	NA	NA	NA	-73616	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.015000	0.427861	
mm_128126.1	chr15	31336647	31336847	-	1	NA	NA	NA	31012	NM_001164441	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.010000	0.502488	
mm_1621.1	chr1	74391759	74391959	+	1	NA	NA	NA	250	NM_153088	227292	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.120000	0.786070	
mm_91875.1	chr10	59582952	59583152	-	1	NA	NA	NA	33640	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.005000	0.393035	
mm_65600.1	chr7	27355897	27356097	-	1	NA	NA	NA	11	NM_138676	192192	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	0.090000	0.661692	
mm_28219.1	chr3	88410283	88410483	-	1	NA	NA	NA	14	NM_001310605	67037	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0.065000	0.616915	
mm_153706.1	chr19	44397743	44397943	-	1	NA	NA	NA	9866	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.025000	0.363184	
mm_142329.1	chr17	43503917	43504117	-	1	NA	NA	NA	-1244	NM_008585	17287	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	0.010000	0.467662	
mm_27059.1	chr3	27691451	27691651	-	1	NA	NA	NA	18888	NM_173182	72007	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.010000	0.472637	
mm_108422.1	chr12	82170060	82170260	+	1	NA	NA	NA	144	NM_001167983	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.080000	0.691542	
mm_60442.1	chr7	44476964	44477164	+	1	NA	NA	NA	6717	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.407960	
mm_105806.1	chr11	110251623	110251823	-	1	NA	NA	NA	53	NM_147218	76184	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	0.020000	0.467662	
mm_17755.1	chr2	32771867	32772067	-	1	NA	NA	NA	3372	NM_001290564	338348	Mm.475130	NM_177384	ENSMUSG00000039021	Ttc16	1200002K10Rik	tetratricopeptide repeat domain 16	protein-coding	0.035000	0.616915	
mm_53101.1	chr6	125067580	125067780	+	1	NA	NA	NA	-240	NM_001163269	381810	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0.020000	0.512438	58(GGCTTTTAGAGC,-,0.00),59(GCTTTTAGAGCT,+,0.00)
mm_163697.1	chr13	101845492	101845692	+	1	NA	NA	NA	-77375	NM_001077495	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.005000	0.393035	
mm_99871.1	chr11	109399255	109399455	+	1	NA	NA	NA	-26591	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.010000	0.417910	
mm_59081.1	chr7	19673138	19673338	+	1	NA	NA	NA	682	NM_001309795	11813	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0.020000	0.601990	
mm_118606.1	chr14	20838668	20838868	+	1	NA	NA	NA	2106	NM_008873	18792	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0.010000	0.522388	
mm_16473.1	chr2	180725257	180725457	+	1	NA	NA	NA	18	NM_183161	228993	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	0.045000	0.616915	
mm_87139.1	chr10	34389882	34390082	+	1	NA	NA	NA	1	NM_009925	12813	Mm.443177	NM_009925	ENSMUSG00000039462	Col10a1	Col10|Col10a-1	collagen, type X, alpha 1	protein-coding	0.025000	0.572139	
mm_111571.1	chr12	101818707	101818907	-	1	NA	NA	NA	312	NM_011812	23876	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	0.090000	0.686567	
mm_2045.1	chr1	87326925	87327125	+	1	NA	NA	NA	27	NM_001110212	227331	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	0.095000	0.671642	
mm_35231.1	chr4	19708863	19709063	-	1	NA	NA	NA	41	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.145000	0.776119	
mm_105087.1	chr11	100850442	100850642	-	1	NA	NA	NA	43	NM_001113563	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.190000	0.805970	
mm_74696.1	chr8	15046739	15046939	-	1	NA	NA	NA	-761	NR_037972	434285	Mm.334425	NM_001007591	ENSMUSG00000049008	BB014433	-	expressed sequence BB014433	ncRNA	0.010000	0.442786	
mm_133311.1	chr16	77626268	77626468	+	1	NA	NA	NA	-19905	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0.005000	0.378109	
mm_157648.1	chrX	57305061	57305261	-	1	NA	NA	NA	33568	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	0.010000	0.522388	
mm_111922.1	chr12	108875549	108875749	-	1	NA	NA	NA	17549	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.020000	0.517413	
mm_94629.1	chr11	16815305	16815505	+	1	NA	NA	NA	63202	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.015000	0.328358	
mm_162111.1	chrX	51680292	51680492	-	1	NA	NA	NA	85	NM_001290468	50786	Mm.252561	NM_015819	ENSMUSG00000062184	Hs6st2	6OST2	heparan sulfate 6-O-sulfotransferase 2	protein-coding	0.085000	0.616915	
mm_98676.1	chr11	96284133	96284333	+	1	NA	NA	NA	2328	NM_010461	15416	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	0.070000	0.582090	
mm_85373.1	chr9	103222105	103222305	-	1	NA	NA	NA	8081	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.000000	0.407960	-90(GTTTTTATAGTT,+,0.00)
mm_76756.1	chr8	95488713	95488913	-	1	NA	NA	NA	7	NM_009974	13000	Mm.51136	NM_009974	ENSMUSG00000046707	Csnk2a2	1110035J23Rik|C77789|CK2	casein kinase 2, alpha prime polypeptide	protein-coding	0.130000	0.800995	
mm_25329.1	chr3	106569330	106569530	+	1	NA	NA	NA	-21628	NM_133869	99712	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.000000	0.368159	
mm_8880.1	chr1	162866329	162866529	-	1	NA	NA	NA	181	NM_010231	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.015000	0.462687	
mm_33719.1	chr4	134060644	134060844	+	1	NA	NA	NA	-7708	NM_001162970	230806	Mm.240080	NM_001162970	ENSMUSG00000012123	Aim1l	-	absent in melanoma 1-like	protein-coding	0.055000	0.636816	
mm_76899.1	chr8	105817479	105817679	-	1	NA	NA	NA	9771	NM_145824	74334	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	0.000000	0.552239	
mm_159764.1	chr5	93268564	93268764	+	1	NA	NA	NA	1091	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0.045000	0.507463	
mm_163459.1	chr12	98770907	98771107	+	1	NA	NA	NA	-15	NM_001160108	75553	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.000000	0.393035	
mm_51797.1	chr6	88465389	88465589	+	1	NA	NA	NA	80	NM_019685	56505	Mm.42195	NM_019685	ENSMUSG00000030079	Ruvbl1	2510009G06Rik|Pontin52|Tip49a	RuvB-like protein 1	protein-coding	0.080000	0.597015	
mm_101929.1	chr11	50202883	50203083	-	1	NA	NA	NA	7837	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.015000	0.532338	
mm_101228.1	chr11	20290375	20290575	-	1	NA	NA	NA	-41051	NM_172260	216543	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.010000	0.472637	
mm_34265.1	chr4	141421715	141421915	+	1	NA	NA	NA	1036	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.045000	0.646766	
mm_72647.1	chr8	84721615	84721815	+	1	NA	NA	NA	20258	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.060000	0.636816	
mm_170695.1	chr2	133233679	133233879	-	1	NA	NA	NA	-287743	NM_198029	241639	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0.020000	0.666667	
mm_11658.1	chr2	35066738	35066938	+	1	NA	NA	NA	-5397	NM_010406	15139	Mm.2168	NM_010406	ENSMUSG00000026874	Hc	C5|C5a|He	hemolytic complement	protein-coding	0.030000	0.547264	
mm_101129.1	chr11	12353930	12354130	-	1	NA	NA	NA	58110	NM_001282994	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.015000	0.492537	
mm_17370.1	chr2	26915594	26915794	-	1	NA	NA	NA	-727	NM_013678	20931	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	0.020000	0.527363	
mm_110886.1	chr12	75483270	75483470	-	1	NA	NA	NA	-66589	NM_175644	217674	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	0.000000	0.318408	-42(GCTTTAAAGCCA,+,0.00)
mm_146548.1	chr18	6214511	6214711	-	1	NA	NA	NA	26913	NM_008448	16573	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.010000	0.407960	
mm_108059.1	chr12	73928104	73928304	+	1	NA	NA	NA	20337	NM_001313919	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.005000	0.358209	
mm_162438.1	chr1	106439412	106439612	+	1	NA	NA	NA	107119	NR_106164	102466254		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.040000	0.497512	-52(CCATAAATACAC,+,0.00)
mm_26426.1	chr3	142618222	142618422	+	1	NA	NA	NA	-2341	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.005000	0.393035	
mm_3510.1	chr1	150107247	150107447	+	1	NA	NA	NA	7316	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.000000	0.298507	
mm_94807.1	chr11	23008448	23008648	+	1	NA	NA	NA	-4839	NM_028672	73873	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0.070000	0.631841	
mm_66808.1	chr7	47252779	47252979	-	1	NA	NA	NA	-31	NM_001288801	668725	Mm.436563	NM_001177566	ENSMUSG00000074111	Mrgpra9	EG668725|MrgA9	MAS-related GPR, member A9	protein-coding	0.005000	0.417910	
mm_141711.1	chr17	34000233	34000433	-	1	NA	NA	NA	0	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.090000	0.597015	
mm_90973.1	chr10	13474301	13474501	-	1	NA	NA	NA	-5	NM_001195065	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.115000	0.741294	
mm_147358.1	chr18	43373193	43373393	-	1	NA	NA	NA	-21	NM_001136086	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.010000	0.447761	-34(TGTTATAAAAGG,-,0.00)
mm_150191.1	chr19	32665707	32665907	+	1	NA	NA	NA	45802	NM_011864	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.010000	0.393035	
mm_135486.1	chr16	46038479	46038679	-	1	NA	NA	NA	-28166	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.010000	0.412935	-63(GGGCCTAAAGGC,-,0.00)
mm_18092.1	chr2	44986383	44986583	-	1	NA	NA	NA	36694	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.283582	
mm_162532.1	chr1	165838826	165839026	+	1	NA	NA	NA	50245	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.010000	0.383085	-7(TTTTTTATAGAC,+,0.00)
mm_42562.1	chr5	117141895	117142095	+	1	NA	NA	NA	8407	NM_183306	330177	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.010000	0.353234	-24(GTTTTTAAAGTA,+,0.00)
mm_101553.1	chr11	33843311	33843511	-	1	NA	NA	NA	174	NM_027398	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.075000	0.711443	
mm_150303.1	chr19	34570188	34570388	+	1	NA	NA	NA	-13241	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.005000	0.487562	
mm_68368.1	chr7	107757816	107758016	-	1	NA	NA	NA	116	NM_001205227	320635	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	0.060000	0.616915	
mm_59963.1	chr7	30428086	30428286	+	1	NA	NA	NA	4882	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.040000	0.572139	
mm_47126.1	chr5	119831886	119832086	-	1	NA	NA	NA	-2677	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.055000	0.562189	
mm_111370.1	chr12	87236912	87237112	-	1	NA	NA	NA	1589	NM_027744	71275	Mm.79198	NM_027744	ENSMUSG00000072919	Noxred1	4933437F05Rik	NADP+ dependent oxidoreductase domain containing 1	protein-coding	0.010000	0.393035	
mm_144684.1	chr18	34776105	34776305	+	1	NA	NA	NA	-803	NM_001081256	277250	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	0.005000	0.378109	
mm_132549.1	chr16	37883371	37883571	+	1	NA	NA	NA	15071	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.010000	0.522388	
mm_113635.1	chr13	42051902	42052102	+	1	NA	NA	NA	-19	NM_007772	110521	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.140000	0.830846	
mm_85359.1	chr9	103215841	103216041	-	1	NA	NA	NA	-13876	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.015000	0.467662	
mm_29498.1	chr3	115989225	115989425	-	1	NA	NA	NA	9423	NR_130332	100316705		NR_130332	ENSMUSG00000089261	Mir669n	mmu-mir-669n	microRNA 669n	ncRNA	0.020000	0.422886	
mm_164944.1	chr19	4037958	4038158	-	1	NA	NA	NA	-146	NM_013541	14870	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	0.065000	0.616915	
mm_145137.1	chr18	45559313	45559513	+	1	NA	NA	NA	-741	NM_080465	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.085000	0.646766	
mm_158070.1	chrX	101263923	101264123	-	1	NA	NA	NA	-31	NM_001317221	245536	Mm.212463	NM_001033362	ENSMUSG00000090141	Gm614	-	predicted gene 614	protein-coding	0.000000	0.507463	
mm_164670.1	chr17	45545656	45545856	+	1	NA	NA	NA	3921	NM_001013749	210573	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0.125000	0.651741	
mm_127881.1	chr15	8639090	8639290	-	1	NA	NA	NA	71617	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.050000	0.567164	
mm_3058.1	chr1	134077748	134077948	+	1	NA	NA	NA	1307	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.005000	0.487562	
mm_76901.1	chr8	105827102	105827302	-	1	NA	NA	NA	148	NM_145824	74334	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	0.070000	0.676617	
mm_132118.1	chr16	31695414	31695614	+	1	NA	NA	NA	31579	NM_001252434	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.020000	0.383085	
mm_40885.1	chr5	74581470	74581670	+	1	NA	NA	NA	46088	NM_001159574	66899	Mm.272468	NM_024183	ENSMUSG00000029227	Fip1l1	1300019H17Rik|Rje	FIP1 like 1 (S. cerevisiae)	protein-coding	0.005000	0.398010	
mm_118573.1	chr14	19278064	19278264	+	1	NA	NA	NA	324423	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.010000	0.462687	-6(CCCCAGAAAAGG,-,0.00)
mm_76921.1	chr8	105933618	105933818	-	1	NA	NA	NA	144	NM_023182	109660	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.020000	0.587065	
mm_26596.1	chr3	151439309	151439509	+	1	NA	NA	NA	1527	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.020000	0.472637	
mm_126527.1	chr15	81980428	81980628	+	1	NA	NA	NA	-12	NM_025503	66346	Mm.54292	NM_025503	ENSMUSG00000061633	1700029P11Rik	-	RIKEN cDNA 1700029P11 gene	protein-coding	0.070000	0.597015	
mm_64737.1	chr7	4725163	4725363	-	1	NA	NA	NA	-12	NM_177887	330460	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	0.015000	0.502488	
mm_48585.1	chr5	143732195	143732395	-	1	NA	NA	NA	-15	NM_029749	76800	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0.190000	0.850746	
mm_63681.1	chr7	130552878	130553078	+	1	NA	NA	NA	-5597	NM_001162855	67872	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0.025000	0.552239	
mm_7439.1	chr1	120073670	120073870	-	1	NA	NA	NA	10	NM_019432	170706	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0.110000	0.726368	
mm_146822.1	chr18	21299986	21300186	-	1	NA	NA	NA	53	NM_001033445	381126	Mm.312276	NM_001033445	ENSMUSG00000042680	Garem1	C86169|Fam59a|Garem|Gm944|mKIAA4238	GRB2 associated regulator of MAPK1 subtype 1	protein-coding	0.110000	0.721393	
mm_100127.1	chr11	115912225	115912425	+	1	NA	NA	NA	308	NM_001162998	68528	Mm.441893	NM_001162998	ENSMUSG00000075420	Smim6	1110017F19Rik	small integral membrane protein 6	protein-coding	0.005000	0.567164	
mm_95499.1	chr11	51883911	51884111	+	1	NA	NA	NA	-26530	NM_199299	76901	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.015000	0.592040	
mm_168912.1	chr12	55230380	55230580	+	1	NA	NA	NA	2	NM_001100110	100101806	Mm.471968	NM_001100110	ENSMUSG00000079108	Srp54c	E330029E12Rik	signal recognition particle 54C	protein-coding	0.075000	0.616915	
mm_36291.1	chr4	64046835	64047035	-	1	NA	NA	NA	80	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding	0.055000	0.587065	-33(CCCTATATAAGC,+,0.00),-33(CCCTATATAAGC,-,0.00)
mm_35604.1	chr4	43045617	43045817	-	1	NA	NA	NA	503	NR_045567	230088	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0.040000	0.631841	
mm_120590.1	chr14	69840380	69840580	+	1	NA	NA	NA	73	NM_028526	73523	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0.015000	0.477612	
mm_41443.1	chr5	90905160	90905360	+	1	NA	NA	NA	1361	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.020000	0.432836	
mm_113545.1	chr13	37930128	37930328	+	1	NA	NA	NA	41357	NM_001177869	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.040000	0.626866	
mm_94841.1	chr11	23666304	23666504	+	1	NA	NA	NA	428	NM_028304	74467	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.055000	0.567164	
mm_90684.1	chr10	128911484	128911684	+	1	NA	NA	NA	1718	NM_007653	12512	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.015000	0.562189	
mm_126820.1	chr15	88752556	88752756	+	1	NA	NA	NA	945	NM_181412	223773	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0.015000	0.333333	-81(CCCTTTATATCG,+,0.00)
mm_58607.1	chr7	5056794	5056994	+	1	NA	NA	NA	168	NM_146178	232821	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	0.115000	0.716418	
mm_153696.1	chr19	44397335	44397535	-	1	NA	NA	NA	10274	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.005000	0.487562	
mm_38275.1	chr4	136886069	136886269	-	1	NA	NA	NA	8	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.010000	0.587065	
mm_5494.1	chr1	36939567	36939767	-	1	NA	NA	NA	-140	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.130000	0.766169	10(GCCCCTTAGAGG,-,0.00),11(CCCCTTAGAGGC,+,0.00)
mm_98821.1	chr11	97362130	97362330	+	1	NA	NA	NA	-321	NM_138657	192157	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.115000	0.741294	65(CCCTCTATGAGG,-,0.00)
mm_63326.1	chr7	126942049	126942249	+	1	NA	NA	NA	7432	NM_001347657	233879	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0.025000	0.557214	
mm_34826.1	chr4	155086494	155086694	+	1	NA	NA	NA	17	NM_001081100	76866	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0.105000	0.646766	
mm_110958.1	chr12	76795345	76795545	-	1	NA	NA	NA	109	NM_030677	14776	Mm.441856	NM_030677	ENSMUSG00000042808	Gpx2	GI-GPx|GPx-GI|GSHPx-2|GSHPx-GI	glutathione peroxidase 2	protein-coding	0.030000	0.512438	
mm_91276.1	chr10	24692285	24692485	-	1	NA	NA	NA	19774	NM_001308327	18605	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	0.010000	0.447761	
mm_173306.1	chrY	83039259	83039459	+	1	NA	NA	NA	814144	NM_001037748	380994	Mm.391354	NM_001037748	ENSMUSG00000093993	Gm20736	-	predicted gene, 20736	protein-coding	0.005000	0.398010	
mm_21117.1	chr2	153505218	153505418	-	1	NA	NA	NA	24653	NM_001134300	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.000000	0.412935	
mm_169823.1	chr16	22431007	22431207	-	1	NA	NA	NA	8463	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.020000	0.572139	
mm_4284.1	chr1	171681892	171682092	+	1	NA	NA	NA	-63	NM_007649	12506	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	0.020000	0.432836	
mm_121212.1	chr14	103054441	103054641	+	1	NA	NA	NA	7529	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.030000	0.552239	
mm_69415.1	chr7	132576282	132576482	-	1	NA	NA	NA	16	NM_016978	18242	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0.110000	0.626866	
mm_64803.1	chr7	6691119	6691319	-	1	NA	NA	NA	5213	NM_011769	22776	Mm.89976	NM_011769	ENSMUSG00000002266	Zim1	-	zinc finger, imprinted 1	protein-coding	0.000000	0.522388	
mm_46259.1	chr5	99617815	99618015	-	1	NA	NA	NA	111145	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.010000	0.407960	-7(TTTTTTAAAGCA,+,0.00)
mm_89378.1	chr10	88885903	88886103	+	1	NA	NA	NA	11	NM_145423	216225	Mm.77381	NM_145423	ENSMUSG00000020062	Slc5a8	Ait|SMCT	solute carrier family 5 (iodide transporter), member 8	protein-coding	0.090000	0.686567	
mm_40881.1	chr5	74535447	74535647	+	1	NA	NA	NA	65	NM_001159574	66899	Mm.272468	NM_024183	ENSMUSG00000029227	Fip1l1	1300019H17Rik|Rje	FIP1 like 1 (S. cerevisiae)	protein-coding	0.115000	0.656716	
mm_86245.1	chr9	121313603	121313803	-	1	NA	NA	NA	-36531	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.020000	0.606965	-35(CACTATAAAAGG,-,0.00)
mm_43605.1	chr5	137887863	137888063	+	1	NA	NA	NA	-16205	NM_001024932	545812	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.005000	0.527363	
mm_67340.1	chr7	79801446	79801646	-	1	NA	NA	NA	-7956	NM_008588	17292	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0.030000	0.582090	
mm_20700.1	chr2	132945516	132945716	-	1	NA	NA	NA	420	NM_198029	241639	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0.055000	0.651741	
mm_65553.1	chr7	27133230	27133430	-	1	NA	NA	NA	13375	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.035000	0.577114	
mm_118388.1	chr13	117272989	117273189	-	1	NA	NA	NA	52516	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.025000	0.412935	-57(GTCTTTTAAAAA,-,0.00)
mm_98514.1	chr11	94952365	94952565	+	1	NA	NA	NA	-15128	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.025000	0.542289	
mm_136491.1	chr16	96124863	96125063	-	1	NA	NA	NA	2762	NM_008251	15312	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	0.015000	0.432836	
mm_170316.1	chr18	37618822	37619022	+	1	NA	NA	NA	19801	NM_001159275	83885	Mm.193029	NM_001159275	ENSMUSG00000050304	Slc25a2	Ornt2	solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2	protein-coding	0.030000	0.497512	
mm_166612.1	chr6	70726751	70726951	+	1	NA	NA	NA	65324	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.507463	
mm_130769.1	chr15	101412199	101412399	-	1	NA	NA	NA	-104	NM_033073	110310	Mm.486285	NM_033073	ENSMUSG00000023039	Krt7	D15Wsu77e|K7|Krt2-7	keratin 7	protein-coding	0.080000	0.696517	
mm_152715.1	chr19	17394425	17394625	-	1	NA	NA	NA	482	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.080000	0.567164	
mm_51077.1	chr6	66918417	66918617	+	1	NA	NA	NA	21626	NM_001177558	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.000000	0.407960	
mm_72678.1	chr8	84913331	84913531	+	1	NA	NA	NA	96	NR_103491	100503676	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	0.080000	0.567164	
mm_30398.1	chr3	152250066	152250266	-	1	NA	NA	NA	16154	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.000000	0.378109	
mm_146894.1	chr18	29496416	29496616	-	1	NA	NA	NA	-100	NR_045391	78058	Mm.416952	NR_045391		4930578E11Rik	-	RIKEN cDNA 4930578E11 gene	ncRNA	0.015000	0.527363	
mm_110368.1	chr12	40134083	40134283	-	1	NA	NA	NA	45	NM_009132	20259	Mm.2416	NM_009132	ENSMUSG00000002565	Scin	AW545522|adseverin	scinderin	protein-coding	0.105000	0.686567	-33(CCGCTTTAAAGC,-,0.00),-31(GCTTTAAAGCCG,+,0.00)
mm_91360.1	chr10	28985282	28985482	-	1	NA	NA	NA	924	NM_026336	67719	Mm.440480	NM_026336	ENSMUSG00000015519	2310057J18Rik	2210414P04Rik|Leg1	RIKEN cDNA 2310057J18 gene	protein-coding	0.005000	0.432836	27(CTCTTTATAAAA,-,0.00)
mm_57974.1	chr6	135713357	135713557	-	1	NA	NA	NA	54544	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	0.010000	0.363184	
mm_69426.1	chr7	132808345	132808545	-	1	NA	NA	NA	4751	NM_212473	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.010000	0.338308	
mm_41256.1	chr5	88886717	88886917	+	1	NA	NA	NA	-443	NM_001197147	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.145000	0.761194	
mm_110801.1	chr12	72212132	72212332	-	1	NA	NA	NA	23514	NR_104446	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.025000	0.442786	
mm_53766.1	chr6	145816411	145816611	+	1	NA	NA	NA	8128	NM_027760	71323	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.030000	0.592040	
mm_18737.1	chr2	72997054	72997254	-	1	NA	NA	NA	-16708	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.020000	0.522388	
mm_60447.1	chr7	44477148	44477348	+	1	NA	NA	NA	6901	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.487562	
mm_101133.1	chr11	12464653	12464853	-	1	NA	NA	NA	207	NM_172496	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.135000	0.741294	
mm_69137.1	chr7	127042333	127042533	-	1	NA	NA	NA	-13	NM_145588	110033	Mm.286488	NM_145588	ENSMUSG00000030677	Kif22	AU021460|C81217|Kid|Kif22a	kinesin family member 22	protein-coding	0.110000	0.601990	
mm_41205.1	chr5	88521155	88521355	+	1	NA	NA	NA	6642	NM_152839	16069	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	0.010000	0.432836	
mm_166419.1	chr5	137151589	137151789	-	1	NA	NA	NA	-35482	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.487562	
mm_90231.1	chr10	121374320	121374520	+	1	NA	NA	NA	9330	NM_029364	75612	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.030000	0.572139	
mm_5841.1	chr1	52953036	52953236	-	1	NA	NA	NA	-296	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.045000	0.606965	
mm_169736.1	chr15	83432766	83432966	-	1	NA	NA	NA	-16	NM_001159510	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.015000	0.562189	
mm_122914.1	chr14	54958520	54958720	-	1	NA	NA	NA	7987	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.015000	0.532338	
mm_170978.1	chr2	69766197	69766397	+	1	NA	NA	NA	23189	NM_001077684	75051	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding	0.070000	0.616915	
mm_67625.1	chr7	84151680	84151880	-	1	NA	NA	NA	113	NM_133722	70178	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.140000	0.756219	
mm_86827.1	chr10	21159104	21159304	+	1	NA	NA	NA	1780	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.060000	0.636816	64(ACCTCTTAAAGG,-,0.00),65(CCTCTTAAAGGG,+,0.00)
mm_39793.1	chr5	30588080	30588280	+	1	NA	NA	NA	10	NM_010608	16527	Mm.439936	NM_010608	ENSMUSG00000049265	Kcnk3	TASK|Task-1|cTBAK-1	potassium channel, subfamily K, member 3	protein-coding	0.160000	0.845771	
mm_102896.1	chr11	69423788	69423988	-	1	NA	NA	NA	-10213	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.025000	0.447761	
mm_51498.1	chr6	83101487	83101687	+	1	NA	NA	NA	71	NM_001081266	243510	Mm.436553	NM_001081266	ENSMUSG00000079511	Ccdc142	A230058J24Rik	coiled-coil domain containing 142	protein-coding	0.090000	0.611940	
mm_2988.1	chr1	133132129	133132329	+	1	NA	NA	NA	1063	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.015000	0.552239	
mm_155161.1	chrX	52988034	52988234	+	1	NA	NA	NA	56	NM_013556	15452	Mm.299381	NM_013556	ENSMUSG00000025630	Hprt	C81579|HPGRT|Hprt1	hypoxanthine guanine phosphoribosyl transferase	protein-coding	0.120000	0.716418	
mm_21382.1	chr2	157450886	157451086	-	1	NA	NA	NA	26693	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.015000	0.562189	
mm_158362.1	chrX	134751297	134751497	-	1	NA	NA	NA	22	NM_001007578	278097	Mm.113272	NM_001007578	ENSMUSG00000050394	Armcx6	AW060994	armadillo repeat containing, X-linked 6	protein-coding	0.055000	0.587065	
mm_84206.1	chr9	60687867	60688067	-	1	NA	NA	NA	167	NM_145616	102747	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0.050000	0.572139	
mm_164207.1	chr15	82197316	82197516	+	1	NA	NA	NA	-706	NR_029804	723897		NR_029804	ENSMUSG00000065465	Mir33	Mirn33|mir-33|mmu-mir-33	microRNA 33	ncRNA	0.020000	0.562189	
mm_16760.1	chr2	9877351	9877551	-	1	NA	NA	NA	1149	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.090000	0.601990	
mm_41536.1	chr5	92843573	92843773	+	1	NA	NA	NA	34291	NM_001077595	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.000000	0.333333	
mm_128252.1	chr15	36770869	36771069	-	1	NA	NA	NA	19963	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.010000	0.447761	-85(TGCCCTAAATGG,-,0.00),-83(CCCTAAATGGTC,+,0.00),-60(CCCTTTAAAATC,+,0.00),-59(CCTTTAAAATCC,+,0.00)
mm_72532.1	chr8	83995322	83995522	+	1	NA	NA	NA	-2250	NM_001081415	666704	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.025000	0.497512	
mm_67444.1	chr7	80388625	80388825	-	1	NA	NA	NA	-779	NM_010194	14159	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.015000	0.522388	
mm_20804.1	chr2	144270742	144270942	-	1	NA	NA	NA	60	NM_001199188	69178	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	0.165000	0.711443	
mm_150106.1	chr19	29522202	29522402	+	1	NA	NA	NA	20	NM_001081319	226089	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0.170000	0.830846	
mm_9341.1	chr1	172028870	172029070	-	1	NA	NA	NA	-1675	NM_033509	93840	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	vang-like 2 (van gogh, Drosophila)	protein-coding	0.015000	0.452736	
mm_32211.1	chr4	101550257	101550457	+	1	NA	NA	NA	-237	NM_001164583	72685	Mm.76494	NM_198412	ENSMUSG00000028528	Dnajc6	2810027M23Rik|mKIAA0473	DnaJ heat shock protein family (Hsp40) member C6	protein-coding	0.070000	0.656716	
mm_11514.1	chr2	32587068	32587268	+	1	NA	NA	NA	90	NM_011373	20448	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0.090000	0.706468	
mm_75686.1	chr8	68158403	68158603	-	1	NA	NA	NA	-118025	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.015000	0.482587	
mm_59492.1	chr7	27523138	27523338	+	1	NA	NA	NA	-23	NM_001033315	233020	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.015000	0.626866	
mm_121462.1	chr14	120798615	120798815	+	1	NA	NA	NA	-112479	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	0.005000	0.577114	-35(CACTATAAAAGA,-,0.00)
mm_103618.1	chr11	78652584	78652784	-	1	NA	NA	NA	44741	NM_008702	18099	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0.005000	0.353234	
mm_60893.1	chr7	46397233	46397433	+	1	NA	NA	NA	865	NM_001112739	16502	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.050000	0.636816	-94(TCCCCTAAAAAG,-,0.00),-92(CCCTAAAAAGCT,+,0.00)
mm_65648.1	chr7	28115187	28115387	-	1	NA	NA	NA	-14179	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.020000	0.507463	
mm_43216.1	chr5	129725012	129725212	+	1	NA	NA	NA	37	NM_008095	14467	Mm.12468	NM_008095	ENSMUSG00000029432	Gbas	AV006093|Nipsnap2	glioblastoma amplified sequence	protein-coding	0.125000	0.766169	
mm_95861.1	chr11	58008985	58009185	+	1	NA	NA	NA	21	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.195000	0.870647	
mm_31368.1	chr4	47312111	47312311	+	1	NA	NA	NA	-41011	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.030000	0.492537	
mm_61600.1	chr7	80026545	80026745	+	1	NA	NA	NA	417	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.090000	0.691542	
mm_63244.1	chr7	126585817	126586017	+	1	NA	NA	NA	-100	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.015000	0.567164	
mm_101606.1	chr11	34833547	34833747	-	1	NA	NA	NA	-6	NM_027411	70385	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0.075000	0.562189	
mm_66123.1	chr7	31053354	31053554	-	1	NA	NA	NA	1399	NM_052991	56188	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	0.035000	0.572139	
mm_33110.1	chr4	124737554	124737754	+	1	NA	NA	NA	-4196	NM_008385	16330	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	0.000000	0.507463	
mm_97985.1	chr11	83941995	83942195	+	1	NA	NA	NA	5	NM_030096	78394	Mm.280544	NM_030096	ENSMUSG00000020677	Ddx52	2700029C06Rik|ROK1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	protein-coding	0.090000	0.582090	
mm_6811.1	chr1	84157242	84157442	-	1	NA	NA	NA	61619	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.363184	
mm_155018.1	chrX	42059534	42059734	+	1	NA	NA	NA	-8202	NM_009688	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.010000	0.467662	
mm_82967.1	chr9	35687289	35687489	-	1	NA	NA	NA	-18	NM_001199953	100312987	Mm.445254	NM_001167677	ENSMUSG00000091215	Pate1	Gm17252|Pate	prostate and testis expressed 1	protein-coding	0.005000	0.447761	
mm_13510.1	chr2	109896213	109896413	+	1	NA	NA	NA	5435	NM_011699	22343	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	0.015000	0.457711	
mm_138780.1	chr17	37270158	37270358	+	1	NA	NA	NA	24	NM_013819	14991	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	0.045000	0.522388	
mm_96790.1	chr11	69965781	69965981	+	1	NA	NA	NA	460	NM_016887	53624	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	0.035000	0.462687	
mm_28821.1	chr3	96285885	96286085	-	1	NA	NA	NA	7984	NM_010186	14129	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0.035000	0.547264	
mm_77712.1	chr8	126591996	126592196	-	1	NA	NA	NA	1340	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.025000	0.547264	
mm_87346.1	chr10	43524046	43524246	+	1	NA	NA	NA	16848	NM_026411	67851	Mm.209953	NM_026411	ENSMUSG00000019797	1700021F05Rik	-	RIKEN cDNA 1700021F05 gene	protein-coding	0.030000	0.597015	-81(TCCTTTATAAGA,-,0.00)
mm_35304.1	chr4	24430747	24430947	-	1	NA	NA	NA	-65615	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.000000	0.462687	
mm_169426.1	chr14	53460976	53461176	+	1	NA	NA	NA	792853	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.447761	
mm_25623.1	chr3	118712873	118713073	+	1	NA	NA	NA	150795	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.005000	0.368159	
mm_7641.1	chr1	128016071	128016271	-	1	NA	NA	NA	86300	NM_027678	226409	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0.010000	0.407960	
mm_3301.1	chr1	136699555	136699755	+	1	NA	NA	NA	3444	NR_037986	100503474	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0.030000	0.462687	
mm_125472.1	chr15	54410642	54410842	+	1	NA	NA	NA	-32	NM_173422	239447	Mm.82400	NM_173422	ENSMUSG00000038591	Colec10	CL-L1	collectin sub-family member 10	protein-coding	0.010000	0.402985	
mm_6622.1	chr1	77457168	77457368	-	1	NA	NA	NA	39500	NR_105770	102465180		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.005000	0.373134	
mm_38631.1	chr4	142239287	142239487	-	1	NA	NA	NA	14	NM_001109685	71529	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	0.105000	0.721393	
mm_115535.1	chr13	6604287	6604487	-	1	NA	NA	NA	44384	NM_019703	56421	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.005000	0.353234	
mm_76877.1	chr8	105567540	105567740	-	1	NA	NA	NA	661	NM_007427	11604	Mm.441696	NM_007427	ENSMUSG00000005705	Agrp	Agrt|Art	agouti related neuropeptide	protein-coding	0.010000	0.517413	-27(TGCCATATAAGC,-,0.00)
mm_96961.1	chr11	70647176	70647376	+	1	NA	NA	NA	-11	NM_001316728	70510	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0.065000	0.572139	
mm_33550.1	chr4	130934801	130935001	+	1	NA	NA	NA	-9484	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.020000	0.492537	
mm_6332.1	chr1	71626141	71626341	-	1	NA	NA	NA	26993	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.030000	0.502488	
mm_18075.1	chr2	42652940	42653140	-	1	NA	NA	NA	558	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding	0.070000	0.597015	
mm_91347.1	chr10	26772285	26772485	-	1	NA	NA	NA	-127	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.040000	0.606965	
mm_82011.1	chr9	121719031	121719231	+	1	NA	NA	NA	-50	NM_010918	18087	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0.135000	0.721393	
mm_54744.1	chr6	41031614	41031814	-	1	NA	NA	NA	3795	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.010000	0.467662	
mm_89467.1	chr10	93453378	93453578	+	1	NA	NA	NA	82	NM_008517	16993	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	0.085000	0.651741	
mm_73463.1	chr8	106660826	106661026	+	1	NA	NA	NA	-22142	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.050000	0.537313	
mm_522.1	chr1	37603494	37603694	+	1	NA	NA	NA	-62578	NM_173870	269181	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.020000	0.492537	
mm_129396.1	chr15	78246186	78246386	-	1	NA	NA	NA	1475	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.010000	0.562189	
mm_142136.1	chr17	35916276	35916476	-	1	NA	NA	NA	-7	NM_025878	66973	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik	mitochondrial ribosomal protein S18B	protein-coding	0.085000	0.606965	
mm_91261.1	chr10	23349806	23350006	-	1	NA	NA	NA	-16	NM_001347372	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.055000	0.582090	
mm_156823.1	chrX	164157827	164158027	+	1	NA	NA	NA	17447	NM_027286	70008	Mm.13451	NM_027286	ENSMUSG00000015405	Ace2	2010305L05Rik	angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	protein-coding	0.020000	0.502488	
mm_73552.1	chr8	108957765	108957965	+	1	NA	NA	NA	21005	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.015000	0.348259	
mm_137689.1	chr17	28872523	28872723	+	1	NA	NA	NA	14212	NM_001034885	433091	Mm.328925	NM_001034885	ENSMUSG00000043286	Pnpla1	-	patatin-like phospholipase domain containing 1	protein-coding	0.020000	0.532338	
mm_14871.1	chr2	148799565	148799765	+	1	NA	NA	NA	826	NM_009978	13012	Mm.20435	NM_009978	ENSMUSG00000027442	Cst8	Cres|Cst-rs1	cystatin 8 (cystatin-related epididymal spermatogenic)	protein-coding	0.015000	0.432836	
mm_164217.1	chr15	84923030	84923230	-	1	NA	NA	NA	-298	NM_016714	18141	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0.115000	0.656716	
mm_122036.1	chr14	30008688	30008888	-	1	NA	NA	NA	108	NM_019583	50905	Mm.269363	NM_019583	ENSMUSG00000015966	Il17rb	Evi27|IL-17ER|IL-17Rh1|IL17RH1|Il17br	interleukin 17 receptor B	protein-coding	0.070000	0.671642	
mm_103719.1	chr11	79530313	79530513	-	1	NA	NA	NA	196	NM_146023	101488212	Mm.439665	NM_146023	ENSMUSG00000070354	Gm21975	Evi2a-evi2b	predicted gene 21975	protein-coding	0.020000	0.427861	-68(CTCTTTAAAAAA,-,0.00)
mm_98747.1	chr11	96532782	96532982	+	1	NA	NA	NA	68291	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.010000	0.363184	
mm_50761.1	chr6	53573279	53573479	+	1	NA	NA	NA	5	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.015000	0.457711	
mm_50644.1	chr6	51463343	51463543	+	1	NA	NA	NA	6451	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.000000	0.378109	
mm_145087.1	chr18	42516121	42516321	+	1	NA	NA	NA	4734	NR_110344	56070	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	0.010000	0.412935	
mm_7099.1	chr1	88702051	88702251	-	1	NA	NA	NA	40	NM_177305	320982	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.140000	0.776119	
mm_86931.1	chr10	24188694	24188894	+	1	NA	NA	NA	-34723	NM_021509	59012	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	0.005000	0.333333	82(ACCTTTAAATGG,-,0.00)
mm_60383.1	chr7	44473708	44473908	+	1	NA	NA	NA	3461	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.437811	
mm_15495.1	chr2	157793450	157793650	+	1	NA	NA	NA	56149	NM_025680	66642	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	0.005000	0.492537	
mm_628.1	chr1	40240871	40241071	+	1	NA	NA	NA	15891	NM_008362	16177	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.005000	0.467662	
mm_161039.1	chr12	30911458	30911658	-	1	NA	NA	NA	54	NM_021330	11431	Mm.359831	NM_021330	ENSMUSG00000044573	Acp1	4632432E04Rik|AI427468|Acp-1|LMW-PTP|Lmptp	acid phosphatase 1, soluble	protein-coding	0.105000	0.636816	
mm_88184.1	chr10	69993010	69993210	+	1	NA	NA	NA	67578	NM_009670	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.030000	0.517413	18(TCCTATAAAGGC,+,0.00),18(TCCTATAAAGGC,-,0.00)
mm_128592.1	chr15	58119252	58119452	-	1	NA	NA	NA	15730	NM_027435	70472	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0.005000	0.432836	
mm_73454.1	chr8	106415306	106415506	+	1	NA	NA	NA	67	NM_011764	22751	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0.095000	0.656716	
mm_104613.1	chr11	97279524	97279724	-	1	NA	NA	NA	952	NM_008942	19155	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0.040000	0.592040	
mm_65876.1	chr7	29518493	29518693	-	1	NA	NA	NA	-13133	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.125000	0.681592	
mm_22306.1	chr2	180381137	180381337	-	1	NA	NA	NA	-4367	NR_045331	622283	Mm.447602	NR_045331		Mir1a-1hg	EG622283|Gm6307	Mir1a-1 and Mir133a-2 host gene	ncRNA	0.005000	0.537313	
mm_20149.1	chr2	121551170	121551370	-	1	NA	NA	NA	44547	NM_001290986	241627	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	0.025000	0.582090	
mm_38341.1	chr4	137766363	137766563	-	1	NA	NA	NA	12	NM_001287172	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.010000	0.552239	
mm_85581.1	chr9	107295660	107295860	-	1	NA	NA	NA	-899	NM_001317354	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.015000	0.522388	
mm_98672.1	chr11	96283176	96283376	+	1	NA	NA	NA	1371	NM_010461	15416	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	0.100000	0.686567	
mm_103611.1	chr11	78536122	78536322	-	1	NA	NA	NA	38	NM_001159392	21927	Mm.386774	NM_009395	ENSMUSG00000017615	Tnfaip1	Bacurd2|Edp-1|Edp1|Tnfip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	protein-coding	0.085000	0.606965	
mm_72441.1	chr8	83165254	83165454	+	1	NA	NA	NA	2	NM_027758	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.030000	0.527363	
mm_155054.1	chrX	42240981	42241181	+	1	NA	NA	NA	39226	NM_001290713	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.005000	0.273632	8(GTTTATATACAG,+,0.00)
mm_60933.1	chr7	46861137	46861337	+	1	NA	NA	NA	-26	NM_013580	16833	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	0.040000	0.562189	
mm_151574.1	chr19	60896111	60896311	+	1	NA	NA	NA	6462	NM_018869	14773	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	0.000000	0.358209	
mm_11262.1	chr2	29965964	29966164	+	1	NA	NA	NA	504	NM_001309460	20740	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	0.125000	0.731343	
mm_169652.1	chr15	54920069	54920269	-	1	NA	NA	NA	-23	NM_001285994	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.030000	0.522388	
mm_157663.1	chrX	58038519	58038719	-	1	NA	NA	NA	7991	NM_009575	22773	Mm.255890	NM_009575	ENSMUSG00000067860	Zic3	Bn|Ka	zinc finger protein of the cerebellum 3	protein-coding	0.075000	0.656716	-69(GGCTTGAAAAGG,-,0.00)
mm_144066.1	chr17	90958800	90959000	-	1	NA	NA	NA	97731	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA	0.010000	0.407960	17(TGGTTTAAAAAG,-,0.00),19(GTTTAAAAAGGC,+,0.00)
mm_50266.1	chr6	45059952	45060152	+	1	NA	NA	NA	-9	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.025000	0.567164	
mm_66239.1	chr7	35537598	35537798	-	1	NA	NA	NA	46	NM_028034	71981	Mm.47904	NM_028034	ENSMUSG00000030491	Tdrd12	2410004F06Rik|2410070K17Rik|ECAT8|EG434165|G1-476-14|repro23	tudor domain containing 12	protein-coding	0.065000	0.636816	
mm_98700.1	chr11	96303584	96303784	+	1	NA	NA	NA	172	NM_008268	15413	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	0.045000	0.512438	
mm_146364.1	chr18	82584381	82584581	+	1	NA	NA	NA	29973	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.045000	0.601990	
mm_92647.1	chr10	80395281	80395481	-	1	NA	NA	NA	4150	NM_013595	17192	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.065000	0.597015	
mm_112926.1	chr13	20944948	20945148	+	1	NA	NA	NA	128251	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.000000	0.412935	
mm_49846.1	chr6	38354660	38354860	+	1	NA	NA	NA	-157	NM_028421	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.070000	0.547264	
mm_34314.1	chr4	141818934	141819134	+	1	NA	NA	NA	6971	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.040000	0.606965	
mm_50060.1	chr6	41178889	41179089	+	1	NA	NA	NA	-123283	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.030000	0.447761	
mm_153442.1	chr19	40994163	40994363	-	1	NA	NA	NA	272	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.035000	0.522388	
mm_150000.1	chr19	29282445	29282645	+	1	NA	NA	NA	30742	NM_008413	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.005000	0.407960	
mm_110366.1	chr12	40114046	40114246	-	1	NA	NA	NA	20082	NM_009132	20259	Mm.2416	NM_009132	ENSMUSG00000002565	Scin	AW545522|adseverin	scinderin	protein-coding	0.015000	0.492537	
mm_96921.1	chr11	70505184	70505384	+	1	NA	NA	NA	10	NM_029360	75604	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.030000	0.582090	
mm_95859.1	chr11	58008848	58009048	+	1	NA	NA	NA	-116	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.210000	0.865672	
mm_65205.1	chr7	19696986	19697186	-	1	NA	NA	NA	1312	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.020000	0.577114	
mm_134133.1	chr16	10668485	10668685	-	1	NA	NA	NA	116951	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.025000	0.606965	
mm_31708.1	chr4	62619559	62619759	+	1	NA	NA	NA	-13	NM_001081650	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.035000	0.641791	
mm_55605.1	chr6	71830762	71830962	-	1	NA	NA	NA	-458	NM_001253681	76614	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	0.025000	0.373134	66(GTCTTTAAATAG,-,0.00)
mm_161698.1	chr17	23844020	23844220	-	1	NA	NA	NA	36	NM_027644	71003	Mm.328839	NM_027644	ENSMUSG00000024114	Prss41	4931440B09Rik|Tessp-1|Tessp1	protease, serine 41	protein-coding	0.030000	0.606965	
mm_95265.1	chr11	44962832	44963032	+	1	NA	NA	NA	153996	NR_045100	100504255	Mm.123608	NR_045100	ENSMUSG00000084773	Gm12159	OTTMUSG00000005475	predicted gene 12159	ncRNA	0.040000	0.537313	
mm_140193.1	chr17	83350935	83351135	+	1	NA	NA	NA	104	NM_001114362	78798	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0.170000	0.761194	
mm_113136.1	chr13	24634581	24634781	+	1	NA	NA	NA	-3967	NM_001080381	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.010000	0.527363	
mm_88052.1	chr10	67539968	67540168	+	1	NA	NA	NA	2138	NM_001347458	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.035000	0.606965	
mm_54567.1	chr6	37871236	37871436	-	1	NA	NA	NA	525	NM_145076	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.105000	0.726368	
mm_38241.1	chr4	136249842	136250042	-	1	NA	NA	NA	1985	NM_011542	21401	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	0.025000	0.557214	
mm_168807.1	chr12	20614988	20615188	+	1	NA	NA	NA	200691	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.105000	0.746269	
mm_115204.1	chr13	109116230	109116430	+	1	NA	NA	NA	-208414	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.040000	0.527363	
mm_67901.1	chr7	99626845	99627045	-	1	NA	NA	NA	158	NM_001195529	100503386	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	0.110000	0.776119	
mm_10850.1	chr2	24983581	24983781	+	1	NA	NA	NA	7648	NM_146251	241274	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0.015000	0.517413	
mm_84432.1	chr9	65908717	65908917	-	1	NA	NA	NA	-23	NM_019797	56404	Mm.208379	NM_019797	ENSMUSG00000032386	Trip4	4930558E03Rik|ASC-1|Asc1|BB191711	thyroid hormone receptor interactor 4	protein-coding	0.045000	0.517413	-4(GCCTTTAAATAC,-,0.00),-2(CTTTAAATACCC,+,0.00)
mm_135283.1	chr16	38447516	38447716	-	1	NA	NA	NA	5073	NM_007414	11544	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.050000	0.582090	
mm_44646.1	chr5	28209809	28210009	-	1	NA	NA	NA	259	NM_001310511	269637	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.115000	0.701493	
mm_100205.1	chr11	116843619	116843819	+	1	NA	NA	NA	204	NM_028865	74319	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	0.115000	0.741294	
mm_124717.1	chr15	6579762	6579962	+	1	NA	NA	NA	15	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.010000	0.432836	
mm_64773.1	chr7	4996006	4996206	-	1	NA	NA	NA	-5	NM_026741	68490	Mm.76400	NM_026741	ENSMUSG00000051550	Zfp579	1110003A17Rik|Znf579	zinc finger protein 579	protein-coding	0.065000	0.656716	
mm_149078.1	chr19	8888803	8889003	+	1	NA	NA	NA	20	NR_104416	66276	Mm.27503	NM_025463	ENSMUSG00000071653	1810009A15Rik	-	RIKEN cDNA 1810009A15 gene	protein-coding	0.080000	0.611940	
mm_90151.1	chr10	118141823	118142023	+	1	NA	NA	NA	136	NM_010785	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.135000	0.736318	
mm_76408.1	chr8	84893064	84893264	-	1	NA	NA	NA	757	NM_001044744	270076	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	0.035000	0.552239	
mm_159806.1	chr5	115186072	115186272	-	1	NA	NA	NA	-51	NM_001310715	29867	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	0.050000	0.661692	
mm_105090.1	chr11	100888479	100888679	-	1	NA	NA	NA	28095	NM_001164062	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.020000	0.437811	
mm_67511.1	chr7	80802874	80803074	-	1	NA	NA	NA	357	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.085000	0.686567	
mm_12021.1	chr2	58157068	58157268	+	1	NA	NA	NA	2954	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.010000	0.487562	
mm_144301.1	chr18	12333878	12334078	+	1	NA	NA	NA	-46	NM_010680	16774	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0.100000	0.726368	
mm_161260.1	chr13	119488078	119488278	+	1	NA	NA	NA	139	NM_001039244	633640	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	0.105000	0.661692	
mm_57788.1	chr6	129269955	129270155	-	1	NA	NA	NA	5314	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.005000	0.442786	
mm_154221.1	chr19	59458197	59458397	-	1	NA	NA	NA	338	NR_002863	329078	Mm.80382	NR_002863	ENSMUSG00000087095	Emx2os	-	Emx2 opposite strand/antisense transcript (non-protein coding)	ncRNA	0.050000	0.666667	
mm_116733.1	chr13	51734588	51734788	-	1	NA	NA	NA	59059	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.020000	0.587065	
mm_103772.1	chr11	82179712	82179912	-	1	NA	NA	NA	0	NM_011329	20290	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|Scya1|Tca-3	chemokine (C-C motif) ligand 1	protein-coding	0.015000	0.542289	
mm_95609.1	chr11	53457093	53457293	+	1	NA	NA	NA	-12	NM_001290789	71774	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	0.090000	0.711443	
mm_1508.1	chr1	72307427	72307627	+	1	NA	NA	NA	106	NM_009533	22596	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.060000	0.577114	
mm_143790.1	chr17	81738261	81738461	-	1	NA	NA	NA	26	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.025000	0.507463	
mm_151089.1	chr19	47705844	47706044	+	1	NA	NA	NA	-13902	NM_001290825	12821	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	0.025000	0.452736	
mm_19061.1	chr2	77316956	77317156	-	1	NA	NA	NA	-36464	NM_175465	228071	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.020000	0.482587	-34(TGCCTTAAAAGC,-,0.00),-33(GCCTTAAAAGCA,+,0.00),-32(CCTTAAAAGCAG,+,0.00)
mm_508.1	chr1	37219096	37219296	+	1	NA	NA	NA	-9	NM_009918	12790	Mm.214224	NM_009918	ENSMUSG00000026114	Cnga3	CNG3	cyclic nucleotide gated channel alpha 3	protein-coding	0.005000	0.527363	-52(CCCTTAAAATCC,+,0.00)
mm_60196.1	chr7	43408429	43408629	+	1	NA	NA	NA	249	NM_172900	243958	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0.015000	0.557214	
mm_104312.1	chr11	93884164	93884364	-	1	NA	NA	NA	1502	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.005000	0.417910	
mm_142420.1	chr17	45568442	45568642	-	1	NA	NA	NA	4390	NM_028662	73836	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.010000	0.472637	
mm_120914.1	chr14	76414663	76414863	+	1	NA	NA	NA	-198	NM_001310646	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.085000	0.676617	
mm_20209.1	chr2	125505935	125506135	-	1	NA	NA	NA	403	NM_007993	14118	Mm.271644	NM_007993	ENSMUSG00000027204	Fbn1	AI536462|B430209H23|Fib-1|Tsk	fibrillin 1	protein-coding	0.100000	0.666667	-27(CCATTAAGACCG,+,0.00)
mm_14513.1	chr2	132289304	132289504	+	1	NA	NA	NA	3465	NM_001291039	110911	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.020000	0.467662	
mm_145204.1	chr18	50001160	50001360	+	1	NA	NA	NA	21833	NM_001177759	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.025000	0.398010	
mm_65320.1	chr7	24954326	24954526	-	1	NA	NA	NA	15649	NR_106013	102465633		NR_106013	ENSMUSG00000098802	Mir7046	Gm27469|mmu-mir-7046	microRNA 7046	ncRNA	0.135000	0.776119	
mm_98167.1	chr11	87749790	87749990	+	1	NA	NA	NA	-6974	NR_029555	387160		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.010000	0.557214	
mm_42682.1	chr5	119796571	119796771	+	1	NA	NA	NA	-37992	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.050000	0.671642	
mm_23059.1	chr3	35822483	35822683	+	1	NA	NA	NA	68445	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.005000	0.368159	
mm_115742.1	chr13	17888480	17888680	-	1	NA	NA	NA	55637	NM_019491	56044	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0.030000	0.417910	
mm_71289.1	chr8	40926211	40926411	+	1	NA	NA	NA	78	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.045000	0.582090	
mm_54220.1	chr6	26766721	26766921	-	1	NA	NA	NA	835395	NR_040771	626904	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.015000	0.412935	
mm_159946.1	chr6	85187804	85188004	+	1	NA	NA	NA	-27	NM_010131	13796	Mm.391473	NM_010131	ENSMUSG00000033726	Emx1	-	empty spiracles homeobox 1	protein-coding	0.105000	0.706468	
mm_149740.1	chr19	22447924	22448124	+	1	NA	NA	NA	-184	NM_177341	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.040000	0.606965	
mm_54059.1	chr6	13871001	13871201	-	1	NA	NA	NA	382	NR_024619	66520	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	ncRNA	0.030000	0.393035	
mm_116771.1	chr13	52929524	52929724	-	1	NA	NA	NA	53	NM_016709	11992	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	0.155000	0.756219	
mm_49154.1	chr6	12128462	12128662	+	1	NA	NA	NA	-18982	NR_003631	625347	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo	0.030000	0.472637	
mm_59741.1	chr7	28815050	28815250	+	1	NA	NA	NA	4260	NM_177301	15388	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.030000	0.522388	
mm_102142.1	chr11	53617250	53617450	-	1	NA	NA	NA	-12	NR_027491	16189	Mm.276360	NM_021283	ENSMUSG00000000869	Il4	BSF-1|Il-4	interleukin 4	protein-coding	0.000000	0.452736	
mm_136661.1	chr17	6079757	6079957	+	1	NA	NA	NA	29	NM_181392	66467	Mm.303441	NM_181392	ENSMUSG00000034345	Gtf2h5	2700017P07Rik|2810432H05Rik|D17Wsu155e	general transcription factor IIH, polypeptide 5	protein-coding	0.105000	0.666667	43(GCCTAGAAAAAG,-,0.00)
mm_136270.1	chr16	91044581	91044781	-	1	NA	NA	NA	-302	NM_026110	67367	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.070000	0.587065	
mm_76822.1	chr8	104609270	104609470	-	1	NA	NA	NA	15026	NM_007663	12556	Mm.19423	NM_007663	ENSMUSG00000031881	Cdh16	-	cadherin 16	protein-coding	0.015000	0.587065	
mm_31646.1	chr4	59581627	59581827	+	1	NA	NA	NA	164	NM_024255	72479	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0.080000	0.671642	
mm_7.1	chr1	4807557	4807757	+	1	NA	NA	NA	-236	NM_008866	18777	Mm.299955	NM_008866	ENSMUSG00000025903	Lypla1	Pla1a	lysophospholipase 1	protein-coding	0.125000	0.701493	
mm_63137.1	chr7	123123786	123123986	+	1	NA	NA	NA	1	NM_144925	233833	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0.065000	0.567164	-49(TTTTTTAAAGGC,+,0.00)
mm_108031.1	chr12	73734705	73734905	+	1	NA	NA	NA	150009	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.025000	0.477612	45(CCCTTGATAAGG,-,0.00)
mm_166966.1	chr7	44480934	44481134	+	1	NA	NA	NA	-3483	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.457711	
mm_118491.1	chr14	12822768	12822968	+	1	NA	NA	NA	211	NM_001042617	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	0.100000	0.711443	
mm_115865.1	chr13	21453638	21453838	-	1	NA	NA	NA	-11	NM_001347491	432731	Mm.390557	NM_001013786	ENSMUSG00000022228	Zscan26	BC068174|Zfp187|Znf187	zinc finger and SCAN domain containing 26	protein-coding	0.075000	0.582090	
mm_157836.1	chrX	74281534	74281734	-	1	NA	NA	NA	102	NM_027109	69537	Mm.20169	NM_027109	ENSMUSG00000019088	Dnase1l1	2310005K03Rik|AI324885|Dnase1ll|Dnasex|Dnl1ll|G4.8	deoxyribonuclease 1-like 1	protein-coding	0.065000	0.611940	
mm_111647.1	chr12	102727243	102727443	-	1	NA	NA	NA	16318	NM_001142937	64113	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	0.020000	0.502488	
mm_77385.1	chr8	120113801	120114001	-	1	NA	NA	NA	-251	NM_001163762	234797	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.105000	0.661692	
mm_111194.1	chr12	84193745	84193945	-	1	NA	NA	NA	170	NM_001163502	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.075000	0.621891	
mm_93585.1	chr10	116950351	116950551	-	1	NA	NA	NA	-71	NM_001003950	216363	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	0.150000	0.796020	
mm_60527.1	chr7	44480044	44480244	+	1	NA	NA	NA	-4373	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.427861	
mm_96627.1	chr11	69156942	69157142	+	1	NA	NA	NA	-30	NM_009659	11686	Mm.340329	NM_009659	ENSMUSG00000032807	Alox12b	12R-LOX|Aloxe2|e-LOX2	arachidonate 12-lipoxygenase, 12R type	protein-coding	0.065000	0.671642	
mm_71682.1	chr8	60993461	60993661	+	1	NA	NA	NA	368	NM_175089	18004	Mm.486881	NM_175089	ENSMUSG00000031644	Nek1	D8Ertd790e|kat	NIMA (never in mitosis gene a)-related expressed kinase 1	protein-coding	0.075000	0.601990	
mm_70836.1	chr8	23236920	23237120	+	1	NA	NA	NA	648	NM_024240	109145	Mm.27945	NM_024240	ENSMUSG00000031546	Gins4	2810037C03Rik|4933405K01Rik|Sld5	GINS complex subunit 4 (Sld5 homolog)	protein-coding	0.025000	0.502488	
mm_78679.1	chr9	40784847	40785047	+	1	NA	NA	NA	-16326	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.020000	0.388060	
mm_17275.1	chr2	26091898	26092098	-	1	NA	NA	NA	398	NM_001037098	67991	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.065000	0.616915	-88(GTTTTTAAAGCT,+,0.00)
mm_42294.1	chr5	114444186	114444386	+	1	NA	NA	NA	17	NM_023556	17855	Mm.28088	NM_023556	ENSMUSG00000041939	Mvk	2310010A05Rik|AI256848|AI414037|MK	mevalonate kinase	protein-coding	0.035000	0.577114	
mm_26737.1	chr3	5950373	5950573	-	1	NA	NA	NA	-374225	NM_001163305	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.005000	0.452736	
mm_36213.1	chr4	62470828	62471028	-	1	NA	NA	NA	-33	NM_001290521	71354	Mm.155573	NM_023597	ENSMUSG00000028391	Wdr31	5430402I10Rik|spWD	WD repeat domain 31	protein-coding	0.105000	0.661692	
mm_13091.1	chr2	91237078	91237278	+	1	NA	NA	NA	32	NR_015464	606735	Mm.246808	NR_015464	ENSMUSG00000097868	A330069E16Rik	-	RIKEN cDNA A330069E16 gene	ncRNA	0.055000	0.611940	
mm_145100.1	chr18	43963143	43963343	+	1	NA	NA	NA	2	NM_001081180	72432	Mm.35369	NM_001081180	ENSMUSG00000055561	Spink5	2310065D10Rik|AV238912|LEKT1|LETK1|VAKT1	serine peptidase inhibitor, Kazal type 5	protein-coding	0.010000	0.477612	
mm_161906.1	chr18	60630004	60630204	-	1	NA	NA	NA	-5799	NM_177340	104027	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	0.010000	0.467662	
mm_106408.1	chr11	119040793	119040993	-	1	NA	NA	NA	20	NM_013926	30951	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.080000	0.681592	
mm_40117.1	chr5	34974720	34974920	+	1	NA	NA	NA	-24258	NM_001163512	71729	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.010000	0.492537	
mm_15906.1	chr2	164995885	164996085	+	1	NA	NA	NA	27997	NM_020333	57138	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	0.010000	0.517413	
mm_141125.1	chr17	26113471	26113671	-	1	NA	NA	NA	255	NM_021793	60455	Mm.304656	NM_021793	ENSMUSG00000024180	Tmem8	AW490096|M83|Tmem8a	transmembrane protein 8 (five membrane-spanning domains)	protein-coding	0.120000	0.761194	
mm_91498.1	chr10	37135958	37136158	-	1	NA	NA	NA	2868	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.045000	0.482587	
mm_149176.1	chr19	9170629	9170829	+	1	NA	NA	NA	-35163	NM_025610	66514	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	0.000000	0.343284	-37(GCACCTTAAAGG,-,0.00)
mm_141060.1	chr17	25754263	25754463	-	1	NA	NA	NA	-36	NM_018857	56047	Mm.17510	NM_018857	ENSMUSG00000063011	Msln	MPF	mesothelin	protein-coding	0.015000	0.592040	
mm_63828.1	chr7	135108657	135108857	+	1	NA	NA	NA	87245	NR_046050	74314	Mm.415339	NR_046050	ENSMUSG00000100717	1700120G07Rik	-	RIKEN cDNA 1700120G07 gene	ncRNA	0.035000	0.457711	
mm_171830.1	chr5	145280477	145280677	+	1	NA	NA	NA	-2766	NM_001081431	666311	Mm.260773	NM_001081431	ENSMUSG00000070420	Zscan25	EG666311|Zfp498	zinc finger and SCAN domain containing 25	protein-coding	0.100000	0.726368	
mm_39671.1	chr5	25249892	25250092	+	1	NA	NA	NA	27099	NM_144908	231050	Mm.21814	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.010000	0.338308	
mm_33411.1	chr4	129898945	129899145	+	1	NA	NA	NA	-7181	NR_045190	319894	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	0.060000	0.562189	
mm_109118.1	chr12	105684036	105684236	+	1	NA	NA	NA	1105	NM_029654	76559	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	0.050000	0.517413	
mm_125716.1	chr15	68928616	68928816	+	1	NA	NA	NA	296	NM_010158	13992	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding	0.165000	0.800995	
mm_112494.1	chr13	6563374	6563574	+	1	NA	NA	NA	15317	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.035000	0.472637	
mm_52410.1	chr6	113389106	113389306	+	1	NA	NA	NA	-54	NM_001142732	101100	Mm.388573	NM_133923	ENSMUSG00000030276	Ttll3	4833441J24Rik|AI450050	tubulin tyrosine ligase-like family, member 3	protein-coding	0.025000	0.512438	
mm_136161.1	chr16	88506883	88507083	-	1	NA	NA	NA	-5	NM_181490	239931	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	0.025000	0.437811	
mm_18542.1	chr2	64975536	64975736	-	1	NA	NA	NA	47130	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0.010000	0.457711	
mm_142186.1	chr17	36867128	36867328	-	1	NA	NA	NA	-18	NM_001177872	69097	Mm.307027	NM_001024134	ENSMUSG00000050747	Trim15	1810012B10Rik	tripartite motif-containing 15	protein-coding	0.035000	0.532338	
mm_98441.1	chr11	94939814	94940014	+	1	NA	NA	NA	3690	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.025000	0.552239	
mm_70294.1	chr8	3676379	3676579	+	1	NA	NA	NA	2	NM_025701	66682	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	0.120000	0.666667	
mm_172469.1	chr7	43253626	43253826	+	1	NA	NA	NA	39687	NM_001177525	100170401		NM_001177525		EU599041	TU7	expressed sequence EU599041	protein-coding	0.010000	0.522388	
mm_81963.1	chr9	120933750	120933950	+	1	NA	NA	NA	272	NM_001165902	12387	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	0.140000	0.761194	
mm_16569.1	chr2	3418970	3419170	-	1	NA	NA	NA	3578	NM_008579	104362	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	0.115000	0.676617	
mm_138582.1	chr17	35470897	35471097	+	1	NA	NA	NA	908	NM_010391	15007	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	0.095000	0.611940	
mm_106219.1	chr11	117040131	117040331	-	1	NA	NA	NA	-36552	NR_027059	76972	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0.010000	0.507463	
mm_91645.1	chr10	42277538	42277738	-	1	NA	NA	NA	-896	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.055000	0.577114	
mm_52955.1	chr6	123049945	123050145	+	1	NA	NA	NA	83	NM_001190310	69810	Mm.333374	NM_027218	ENSMUSG00000030147	Clec4b1	1810046I24Rik|Aplra2|Clec4b|DCAR|DCARbeta|Dcar2	C-type lectin domain family 4, member b1	protein-coding	0.000000	0.442786	
mm_78834.1	chr9	44240581	44240781	+	1	NA	NA	NA	4	NM_001081369	270150	Mm.347681	NM_001081369	ENSMUSG00000070306	Ccdc153	-	coiled-coil domain containing 153	protein-coding	0.000000	0.502488	
mm_99773.1	chr11	107025962	107026162	+	1	NA	NA	NA	-2161	NM_001163473	69066	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	OTTMUSG00000003581	RIKEN cDNA 1810010H24 gene	protein-coding	0.065000	0.601990	
mm_46917.1	chr5	114443945	114444145	-	1	NA	NA	NA	-18	NM_001347398	77697	Mm.105182	NM_029956	ENSMUSG00000029575	Mmab	9130222L19Rik|ATR	methylmalonic aciduria (cobalamin deficiency) cblB type homolog (human)	protein-coding	0.095000	0.686567	
mm_42768.1	chr5	121220323	121220523	+	1	NA	NA	NA	204	NM_181421	269700	Mm.184589	NM_181421	ENSMUSG00000042744	Gm15800	A130010L24|AU042671|BC019639|EG545802|OTTMUSG00000026283|mKIAA0614	predicted gene 15800	protein-coding	0.190000	0.815920	
mm_170764.1	chr2	160880664	160880864	+	1	NA	NA	NA	94	NM_022883	64899	Mm.292111	NM_022883	ENSMUSG00000027412	Lpin3	9130206L11Rik|AA438110|AV236139|mKIAA4023	lipin 3	protein-coding	0.025000	0.537313	
mm_110954.1	chr12	76709983	76710183	-	1	NA	NA	NA	464	NM_013675	20741	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0.090000	0.716418	
mm_4608.1	chr1	178528512	178528712	+	1	NA	NA	NA	-513	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.060000	0.621891	
mm_141171.1	chr17	26570632	26570832	-	1	NA	NA	NA	9220	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.025000	0.626866	-19(CCACATATAAGC,-,0.00)
mm_51578.1	chr6	83758829	83759029	+	1	NA	NA	NA	3579	NR_105027	67934	Mm.126190	NR_105027	ENSMUSG00000099354	1700124L16Rik	-	RIKEN cDNA 1700124L16 gene	ncRNA	0.015000	0.462687	
mm_139274.1	chr17	48232666	48232866	+	1	NA	NA	NA	27	NM_021406	58217	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	0.015000	0.557214	
mm_164416.1	chr16	38403871	38404071	+	1	NA	NA	NA	29174	NM_134102	85031	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.025000	0.467662	
mm_79336.1	chr9	53341247	53341447	+	1	NA	NA	NA	39677	NM_176846	320051	Mm.277540	NM_176846	ENSMUSG00000034584	Exph5	AC079869.22gm5|B130009M24Rik|E030050P12|Kiaa0624|Slac2b|slac2-b	exophilin 5	protein-coding	0.035000	0.547264	
mm_157396.1	chrX	38407469	38407669	-	1	NA	NA	NA	48891	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.005000	0.452736	
mm_41296.1	chr5	90464042	90464242	+	1	NA	NA	NA	3272	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.477612	
mm_149278.1	chr19	10605834	10606034	+	1	NA	NA	NA	309	NM_015735	13194	Mm.289915	NM_015735	ENSMUSG00000024740	Ddb1	127kDa|AA408517|p127-Ddb1	damage specific DNA binding protein 1	protein-coding	0.065000	0.587065	
mm_43006.1	chr5	123629923	123630123	+	1	NA	NA	NA	54338	NM_019765	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.020000	0.417910	-81(GCTTAAATAGGA,+,0.00)
mm_15062.1	chr2	152967844	152968044	+	1	NA	NA	NA	5459	NM_001083618	74711	Mm.44746	NM_029064	ENSMUSG00000074673	Ttll9	1700016F23Rik|4930509O20Rik|AW046572	tubulin tyrosine ligase-like family, member 9	protein-coding	0.000000	0.467662	0(TCTTTTAGAGGC,+,0.00)
mm_75893.1	chr8	70895616	70895816	-	1	NA	NA	NA	140	NR_002901	104370		NR_002901		Snora68	MBI-30|Rnu68	small nucleolar RNA, H/ACA box 68	snoRNA	0.040000	0.601990	
mm_65494.1	chr7	25712040	25712240	-	1	NA	NA	NA	6913	NM_028771	52132	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.010000	0.606965	
mm_19573.1	chr2	101641470	101641670	-	1	NA	NA	NA	7962	NM_009019	19373	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0.010000	0.502488	
mm_76224.1	chr8	83572835	83573035	-	1	NA	NA	NA	6177	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.040000	0.601990	
mm_142378.1	chr17	44736191	44736391	-	1	NA	NA	NA	-115	NM_001271631	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.125000	0.716418	
mm_107185.1	chr12	25095628	25095828	+	1	NA	NA	NA	364	NM_010496	15902	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.050000	0.577114	
mm_47515.1	chr5	124079989	124080189	-	1	NA	NA	NA	15709	NM_019875	56325	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.070000	0.616915	
mm_50303.1	chr6	47781523	47781723	+	1	NA	NA	NA	22029	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.015000	0.383085	-58(GACTTGTAAAGG,-,0.00),-32(CCTTATATATCT,+,0.00)
mm_110190.1	chr12	27340102	27340302	-	1	NA	NA	NA	2516	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.005000	0.298507	41(TGGTTTAAAAGG,-,0.00)
mm_67413.1	chr7	80115225	80115425	-	1	NA	NA	NA	25	NM_173011	269951	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.090000	0.721393	
mm_153777.1	chr19	45777367	45777567	-	1	NA	NA	NA	5824	NM_023799	76055	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	2810009A20Rik|4833427O07Rik|5830447M11Rik|AA408215|Hy5|Ncoat|OGA|mKIAA0679	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0.025000	0.502488	
mm_87658.1	chr10	58483947	58484147	+	1	NA	NA	NA	-13890	NM_001162956	76138	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.005000	0.378109	
mm_137845.1	chr17	31057627	31057827	+	1	NA	NA	NA	33	NM_009593	11307	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding	0.140000	0.776119	
mm_137825.1	chr17	30603099	30603299	+	1	NA	NA	NA	9460	NM_025374	109801	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding	0.035000	0.532338	
mm_32689.1	chr4	115878214	115878414	+	1	NA	NA	NA	-6086	NM_001039124	654462	Mm.388913	NM_001039124	ENSMUSG00000073774	Kncn	Kino|L5	kinocilin	protein-coding	0.010000	0.537313	
mm_145759.1	chr18	64888763	64888963	+	1	NA	NA	NA	1107	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.040000	0.487562	-34(GTTTTTAAAAGC,+,0.00),-34(GTTTTTAAAAGC,-,0.00),-33(TTTTTAAAAGCC,+,0.00)
mm_120800.1	chr14	74745451	74745651	+	1	NA	NA	NA	13254	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.030000	0.368159	
mm_74609.1	chr8	12466862	12467062	-	1	NA	NA	NA	71443	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.010000	0.402985	
mm_25310.1	chr3	106113270	106113470	+	1	NA	NA	NA	-12	NM_023186	81600	Mm.46418	NM_023186	ENSMUSG00000062778	Chia1	2200003E03Rik|AMCase|Chia|YNL	chitinase, acidic 1	protein-coding	0.020000	0.462687	-34(TGTTATAAAAAG,-,0.00)
mm_17904.1	chr2	35303169	35303369	-	1	NA	NA	NA	20889	NM_146120	227753	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.040000	0.616915	
mm_37831.1	chr4	132016045	132016245	-	1	NA	NA	NA	32933	NM_001128606	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.010000	0.398010	
mm_141856.1	chr17	34803391	34803591	-	1	NA	NA	NA	935	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.020000	0.601990	
mm_141549.1	chr17	32164909	32165109	-	1	NA	NA	NA	1843	NM_008716	18131	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0.000000	0.358209	
mm_156440.1	chrX	142228116	142228316	+	1	NA	NA	NA	39	NM_172782	237082	Mm.41899	NM_172782	ENSMUSG00000042271	Nxt2	6330587F24Rik|AI787442|P15-2	nuclear transport factor 2-like export factor 2	protein-coding	0.065000	0.517413	
mm_157466.1	chrX	46456244	46456444	-	1	NA	NA	NA	127337	NM_028514	73360	Mm.60929	NM_028514	ENSMUSG00000046615	Actrt1	1700061J02Rik|Arp-T1	actin-related protein T1	protein-coding	0.030000	0.427861	
mm_31718.1	chr4	62652389	62652589	+	1	NA	NA	NA	-21485	NM_001310706	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.015000	0.572139	
mm_110148.1	chr12	26450443	26450643	-	1	NA	NA	NA	5909	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.020000	0.457711	
mm_18827.1	chr2	74661148	74661348	-	1	NA	NA	NA	-1691	NM_007967	14029	Mm.25365	NM_007967	ENSMUSG00000001815	Evx2	Evx-2	even-skipped homeobox 2	protein-coding	0.030000	0.567164	
mm_136459.1	chr16	95259604	95259804	-	1	NA	NA	NA	2146	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.015000	0.517413	
mm_84527.1	chr9	67046015	67046215	-	1	NA	NA	NA	-2244	NM_001164253	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.010000	0.447761	-75(GGCTATTTAAAG,-,0.00),-73(CTATTTAAAGTC,+,0.00)
mm_170795.1	chr2	175372333	175372533	+	1	NA	NA	NA	-29	NM_001177405	667962	Mm.422667	NM_001177405	ENSMUSG00000089756	Zfp966	Gm8898|OTTMUSG00000016203	zinc finger protein 966	protein-coding	0.015000	0.492537	
mm_68565.1	chr7	115550488	115550688	-	1	NA	NA	NA	251021	NM_001277328	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.015000	0.477612	
mm_103606.1	chr11	78497432	78497632	-	1	NA	NA	NA	222	NM_001168521	237868	Mm.210332	NM_172795	ENSMUSG00000050132	Sarm1	A830091I15Rik|C78606|MyD885|Sarm	sterile alpha and HEAT/Armadillo motif containing 1	protein-coding	0.035000	0.577114	
mm_78659.1	chr9	40458327	40458527	+	1	NA	NA	NA	-2663	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.010000	0.447761	
mm_75660.1	chr8	66481239	66481439	-	1	NA	NA	NA	5168	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.000000	0.358209	
mm_150265.1	chr19	34217163	34217363	+	1	NA	NA	NA	24993	NM_029682	76630	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.020000	0.477612	
mm_146066.1	chr18	70472331	70472531	+	1	NA	NA	NA	-23	NM_029019	170461	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	0.135000	0.706468	
mm_75926.1	chr8	71507534	71507734	-	1	NA	NA	NA	4135	NM_032398	84094	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	0.100000	0.691542	
mm_36364.1	chr4	76344139	76344339	-	1	NA	NA	NA	-1065953	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.005000	0.472637	
mm_110519.1	chr12	54862582	54862782	-	1	NA	NA	NA	195	NM_007688	12632	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	0.150000	0.786070	
mm_101736.1	chr11	43311040	43311240	-	1	NA	NA	NA	63321	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.000000	0.477612	43(GCTTTAAAACAA,+,0.00)
mm_79646.1	chr9	59564769	59564969	+	1	NA	NA	NA	-13468	NM_175235	76183	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0.005000	0.532338	87(GGCCTTAAGAGA,-,0.00),88(GCCTTAAGAGAG,+,0.00)
mm_19286.1	chr2	90439573	90439773	-	1	NA	NA	NA	39033	NM_146263	258330	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	0.005000	0.328358	
mm_152762.1	chr19	20382836	20383036	-	1	NA	NA	NA	7735	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.005000	0.442786	
mm_46556.1	chr5	106696458	106696658	-	1	NA	NA	NA	272	NM_026856	52397	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.155000	0.706468	
mm_137214.1	chr17	24168669	24168869	+	1	NA	NA	NA	626	NR_037854	100039636	Mm.30155	NR_037854		Atp6v0c-ps2	Atp6l-ps2|Gm15487	ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2	pseudo	0.040000	0.651741	-34(CGCCATAAAAGC,-,0.00)
mm_84313.1	chr9	63714656	63714856	-	1	NA	NA	NA	43238	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.025000	0.457711	-24(GCTTAAAGAGGA,+,0.00)
mm_138642.1	chr17	35866541	35866741	+	1	NA	NA	NA	26	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.080000	0.706468	
mm_139385.1	chr17	52149222	52149422	+	1	NA	NA	NA	266595	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.010000	0.462687	
mm_98643.1	chr11	96203350	96203550	+	1	NA	NA	NA	-4	NR_108029	432593	Mm.342467	NR_108029		Gm11538	OTTMUSG00000001983	predicted gene 11538	ncRNA	0.045000	0.542289	
mm_8956.1	chr1	164460763	164460963	-	1	NA	NA	NA	-2508	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.010000	0.442786	
mm_32262.1	chr4	102589602	102589802	+	1	NA	NA	NA	-141	NM_001177981	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.010000	0.492537	
mm_125591.1	chr15	59648263	59648463	+	1	NA	NA	NA	-291	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.100000	0.756219	
mm_89206.1	chr10	86693878	86694078	+	1	NA	NA	NA	8451	NR_015572	66263	Mm.392261	NR_015572		1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	0.010000	0.452736	
mm_63996.1	chr7	140115745	140115945	+	1	NA	NA	NA	578	NM_053119	93747	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	0.015000	0.467662	-59(TTCTCTTAAAGC,-,0.00)
mm_26512.1	chr3	145891508	145891708	+	1	NA	NA	NA	-32654	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.010000	0.457711	
mm_77495.1	chr8	122576813	122577013	-	1	NA	NA	NA	-6	NM_009698	11821	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	0.080000	0.656716	
mm_42341.1	chr5	114904741	114904941	+	1	NA	NA	NA	7907	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.010000	0.502488	
mm_109722.1	chr12	116140888	116141088	+	1	NA	NA	NA	63262	NM_009511	22355	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding	0.005000	0.457711	
mm_112685.1	chr13	16030488	16030688	+	1	NA	NA	NA	18737	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.000000	0.348259	
mm_104998.1	chr11	100356022	100356222	-	1	NA	NA	NA	19	NM_177981	15114	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.085000	0.646766	
mm_98998.1	chr11	98795435	98795635	+	1	NA	NA	NA	-234	NM_028722	74026	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male-specific lethal 1 homolog (Drosophila)	protein-coding	0.125000	0.810945	
mm_77891.1	chr9	7347369	7347569	+	1	NA	NA	NA	95	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.462687	-96(GGTTATATAAAG,-,0.00),-82(GGGCTTTAAGGG,-,0.00),-80(GCTTTAAGGGAA,+,0.00)
mm_70945.1	chr8	26266776	26266976	+	1	NA	NA	NA	108707	NM_199042	73754	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0.015000	0.437811	
mm_58685.1	chr7	12834677	12834877	+	1	NA	NA	NA	-33	NM_022981	65020	Mm.292297	NM_022981	ENSMUSG00000058638	Zfp110	2900024E01Rik|N28112|NRIF|Nrif1	zinc finger protein 110	protein-coding	0.050000	0.542289	
mm_124647.1	chr15	5116556	5116756	+	1	NA	NA	NA	43	NM_026069	67281	Mm.10474	NM_026069	ENSMUSG00000041841	Rpl37	3110005M08Rik	ribosomal protein L37	protein-coding	0.050000	0.592040	
mm_76528.1	chr8	87501131	87501331	-	1	NA	NA	NA	28115	NR_125722	100040294	Mm.213632	NR_033430	ENSMUSG00000097248	Gm2694	C230036H16Rik|linc1582	predicted gene 2694	ncRNA	0.020000	0.542289	
mm_63349.1	chr7	126976269	126976469	+	1	NA	NA	NA	455	NM_001347656	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.050000	0.507463	11(CGGCCTTAAAGG,-,0.00),12(GGCCTTAAAGGG,-,0.00),14(CCTTAAAGGGAC,+,0.00)
mm_131154.1	chr16	6842286	6842486	+	1	NA	NA	NA	-227449	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.020000	0.427861	-42(GTGTTTATAAAG,-,0.00),-40(GTTTATAAAGAG,+,0.00),50(GCTTTTAGAGTG,+,0.00)
mm_114951.1	chr13	96748233	96748433	+	1	NA	NA	NA	-77397	NM_008255	15357	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0.080000	0.626866	
mm_76041.1	chr8	77477117	77477317	-	1	NA	NA	NA	-39839	NR_028125	70345	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.000000	0.358209	
mm_164247.1	chr15	96457139	96457339	+	1	NA	NA	NA	3604	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.005000	0.427861	
mm_73061.1	chr8	94386368	94386568	+	1	NA	NA	NA	-32	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.100000	0.651741	-5(GCCCATAAAAGG,-,0.00)
mm_143534.1	chr17	73950045	73950245	-	1	NA	NA	NA	51	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.040000	0.482587	
mm_127376.1	chr15	100810494	100810694	+	1	NA	NA	NA	29340	NM_001347102	59033	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0.050000	0.557214	
mm_112631.1	chr13	15931581	15931781	+	1	NA	NA	NA	-80170	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.015000	0.477612	
mm_43384.1	chr5	135728562	135728762	+	1	NA	NA	NA	7227	NR_106001	102466791		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.025000	0.547264	
mm_149939.1	chr19	27217315	27217515	+	1	NA	NA	NA	395	NM_001161420	22359	Mm.4141	NM_013703	ENSMUSG00000024924	Vldlr	AA408956|AI451093|AW047288	very low density lipoprotein receptor	protein-coding	0.095000	0.696517	
mm_167455.1	chr8	123193477	123193677	+	1	NA	NA	NA	7342	NM_007876	13479	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	0.010000	0.432836	
mm_17221.1	chr2	25500185	25500385	-	1	NA	NA	NA	221	NM_027062	69379	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	0.015000	0.577114	
mm_7825.1	chr1	132067836	132068036	-	1	NA	NA	NA	126	NM_172510	213006	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4a	A230072B04|A930031D07Rik|AI850289|Mfsd4	major facilitator superfamily domain containing 4A	protein-coding	0.135000	0.786070	
mm_7492.1	chr1	121332479	121332679	-	1	NA	NA	NA	10	NM_178082	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.000000	0.457711	
mm_27142.1	chr3	32616784	32616984	-	1	NA	NA	NA	-349	NM_013531	14696	Mm.139192	NM_013531	ENSMUSG00000027669	Gnb4	6720453A21Rik|G(beta)4	guanine nucleotide binding protein (G protein), beta 4	protein-coding	0.075000	0.681592	
mm_143901.1	chr17	84790720	84790920	-	1	NA	NA	NA	-34	NM_028233	72416	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0.070000	0.631841	
mm_21394.1	chr2	157566235	157566435	-	1	NA	NA	NA	26	NM_016916	53619	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0.090000	0.656716	
mm_95432.1	chr11	50207369	50207569	+	1	NA	NA	NA	3351	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.040000	0.616915	
mm_22033.1	chr2	168184017	168184217	-	1	NA	NA	NA	22995	NM_009628	11538	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0.010000	0.552239	
mm_125974.1	chr15	76294741	76294941	+	1	NA	NA	NA	407	NM_001195537	100503915	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	ENSMUSG00000071724|Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	0.065000	0.646766	
mm_28674.1	chr3	95307057	95307257	-	1	NA	NA	NA	19	NM_023628	71790	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	0.025000	0.547264	
mm_164168.1	chr15	74617368	74617568	+	1	NA	NA	NA	18850	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.010000	0.507463	
mm_163539.1	chr13	13845489	13845689	+	1	NA	NA	NA	61282	NM_010317	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0.005000	0.502488	
mm_83912.1	chr9	56382025	56382225	-	1	NA	NA	NA	35925	NM_172924	244895	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	0.000000	0.412935	
mm_133017.1	chr16	56282057	56282257	+	1	NA	NA	NA	77844	NM_174876	224224	Mm.151998	NM_174876	ENSMUSG00000035270	Impg2	IPM200|PG10.2|Rsbp|Spacrcan	interphotoreceptor matrix proteoglycan 2	protein-coding	0.005000	0.293532	62(GCATTTAGAGCT,+,0.00)
mm_50170.1	chr6	41554760	41554960	+	1	NA	NA	NA	33084	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.432836	
mm_150256.1	chr19	34192270	34192470	+	1	NA	NA	NA	100	NM_029682	76630	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.055000	0.621891	
mm_3181.1	chr1	135766108	135766308	+	1	NA	NA	NA	123	NM_013750	27280	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	0.135000	0.731343	
mm_172194.1	chr6	51466089	51466289	-	1	NA	NA	NA	3705	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.010000	0.402985	
mm_141374.1	chr17	29032304	29032504	-	1	NA	NA	NA	-256	NM_013663	20383	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0.145000	0.711443	
mm_163648.1	chr13	64065973	64066173	-	1	NA	NA	NA	23128	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.000000	0.422886	
mm_116677.1	chr13	49242770	49242970	-	1	NA	NA	NA	5293	NM_025491	66329	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.030000	0.547264	
mm_30747.1	chr4	14864167	14864367	+	1	NA	NA	NA	48	NM_028264	72519	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360	transmembrane protein 55A	protein-coding	0.115000	0.741294	
mm_152839.1	chr19	23448164	23448364	-	1	NA	NA	NA	58	NM_174857	71738	Mm.50841	NM_174857	ENSMUSG00000033207	Mamdc2	1200015L10Rik|AI591564|mamcan	MAM domain containing 2	protein-coding	0.060000	0.631841	
mm_2295.1	chr1	91482924	91483124	+	1	NA	NA	NA	-11644	NM_028718	74019	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	0.000000	0.497512	-34(CCCTTTATATTC,+,0.00)
mm_36304.1	chr4	68954274	68954474	-	1	NA	NA	NA	23	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.070000	0.661692	
mm_93812.1	chr10	121310943	121311143	-	1	NA	NA	NA	146	NM_029057	74694	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik	TBC1 domain family, member 30	protein-coding	0.110000	0.711443	
mm_95182.1	chr11	42419846	42420046	+	1	NA	NA	NA	189	NM_008070	14401	Mm.338723	NM_008070	ENSMUSG00000007653	Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding	0.035000	0.567164	
mm_121149.1	chr14	101910682	101910882	+	1	NA	NA	NA	70159	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.035000	0.467662	
mm_143220.1	chr17	63216850	63217050	-	1	NA	NA	NA	96023	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.005000	0.273632	
mm_32819.1	chr4	117445729	117445929	+	1	NA	NA	NA	51223	NM_025739	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.035000	0.552239	
mm_26873.1	chr3	17403074	17403274	-	1	NA	NA	NA	-386747	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.005000	0.358209	6(ACTTTTAAGGAC,+,0.00)
mm_33471.1	chr4	130818499	130818699	+	1	NA	NA	NA	26062	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.035000	0.641791	
mm_170778.1	chr2	169822997	169823197	-	1	NA	NA	NA	140090	NR_131974	446211	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0.025000	0.457711	-90(CCCTTTAAAAAT,-,0.00)
mm_4492.1	chr1	173641201	173641401	+	1	NA	NA	NA	10442	NM_175026	236312	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	0.000000	0.383085	
mm_28657.1	chr3	95240923	95241123	-	1	NA	NA	NA	86	NM_001024841	229588	Mm.387177	NM_001024841	ENSMUSG00000068860	Gm128	Ment|pmis1	predicted gene 128	protein-coding	0.055000	0.666667	
mm_14591.1	chr2	136057868	136058068	+	1	NA	NA	NA	41	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.010000	0.497512	
mm_171042.1	chr2	97949633	97949833	-	1	NA	NA	NA	482076	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.035000	0.457711	
mm_11682.1	chr2	35562665	35562865	+	1	NA	NA	NA	-4063	NR_045894	100042194	Mm.330165	NR_045894	ENSMUSG00000086555	Gm13446	OTTMUSG00000012261	predicted gene 13446	ncRNA	0.020000	0.472637	
mm_83469.1	chr9	45409987	45410187	-	1	NA	NA	NA	4010	NM_007503	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.020000	0.611940	
mm_37484.1	chr4	123572880	123573080	-	1	NA	NA	NA	-43440	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.015000	0.512438	
mm_139498.1	chr17	56256719	56256919	+	1	NA	NA	NA	26	NM_010192	14154	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0.080000	0.611940	
mm_69997.1	chr7	142385816	142386016	-	1	NA	NA	NA	1954	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.005000	0.547264	
mm_118958.1	chr14	27403242	27403442	+	1	NA	NA	NA	-25505	NM_028945	218850	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0.000000	0.318408	
mm_140242.1	chr17	84146008	84146208	+	1	NA	NA	NA	41839	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.030000	0.557214	
mm_116807.1	chr13	54190080	54190280	-	1	NA	NA	NA	-1949	NM_001010973	15466	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	-	histamine receptor H2	protein-coding	0.040000	0.537313	
mm_161394.1	chr14	99176472	99176672	+	1	NA	NA	NA	-76802	NM_028315	72662	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	0.000000	0.472637	
mm_97358.1	chr11	77503718	77503918	+	1	NA	NA	NA	9455	NM_001024920	216964	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	0.010000	0.621891	
mm_65175.1	chr7	19691928	19692128	-	1	NA	NA	NA	631	NM_001110009	11812	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0.050000	0.567164	
mm_96086.1	chr11	60175772	60175972	+	1	NA	NA	NA	24745	NR_105886	102465555		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	0.110000	0.721393	
mm_113764.1	chr13	44800686	44800886	+	1	NA	NA	NA	69515	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.000000	0.417910	70(CCCCAGAAAAGG,-,0.00)
mm_110434.1	chr12	46819408	46819608	-	1	NA	NA	NA	-733	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.115000	0.726368	
mm_90125.1	chr10	117629400	117629600	+	1	NA	NA	NA	0	NM_027468	70574	Mm.339332	NM_027468	ENSMUSG00000020183	Cpm	1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik	carboxypeptidase M	protein-coding	0.140000	0.756219	
mm_9139.1	chr1	170867673	170867873	-	1	NA	NA	NA	-2	NM_001081304	226641	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.095000	0.606965	
mm_76506.1	chr8	86884905	86885105	-	1	NA	NA	NA	253	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.155000	0.791045	
mm_168315.1	chr11	109011998	109012198	-	1	NA	NA	NA	91749	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.035000	0.492537	
mm_139415.1	chr17	53421825	53422025	+	1	NA	NA	NA	41396	NM_172497	211482	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	0.020000	0.492537	
mm_94301.1	chr11	4135140	4135340	+	1	NA	NA	NA	80	NM_027859	71673	Mm.240586	NM_027859	ENSMUSG00000003581	Rnf215	0610009J22Rik|AW557025|C77903	ring finger protein 215	protein-coding	0.130000	0.761194	
mm_148437.1	chr19	3946946	3947146	+	1	NA	NA	NA	-11762	NM_028545	73458	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	0.005000	0.527363	
mm_140580.1	chr17	10211938	10212138	-	1	NA	NA	NA	107323	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.005000	0.378109	
mm_133124.1	chr16	65815729	65815929	+	1	NA	NA	NA	196	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.065000	0.636816	
mm_58153.1	chr6	142338893	142339093	-	1	NA	NA	NA	-6704	NM_183165	232491	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	0.000000	0.437811	-34(CAGCTTAAAAGC,-,0.00)
mm_160284.1	chr7	123179796	123179996	+	1	NA	NA	NA	-34970	NM_146198	233836	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.010000	0.338308	22(CCCTTAATAGTA,+,0.00)
mm_154944.1	chrX	36195881	36196081	+	1	NA	NA	NA	77	NM_028325	72693	Mm.297698	NM_028325	ENSMUSG00000036699	Zcchc12	2810028A01Rik|AV136720|Sizn1	zinc finger, CCHC domain containing 12	protein-coding	0.055000	0.567164	
mm_84059.1	chr9	58199027	58199227	-	1	NA	NA	NA	2588	NM_001161535	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.055000	0.582090	
mm_125833.1	chr15	74957710	74957910	+	1	NA	NA	NA	2704	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.010000	0.537313	
mm_121901.1	chr14	21848831	21849031	-	1	NA	NA	NA	-21	NM_026965	69156	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0.070000	0.651741	
mm_117514.1	chr13	80885454	80885654	-	1	NA	NA	NA	2132	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.080000	0.626866	
mm_65786.1	chr7	28810120	28810320	-	1	NA	NA	NA	-670	NM_177301	15388	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.060000	0.537313	
mm_16939.1	chr2	14739842	14740042	-	1	NA	NA	NA	19300	NR_028497	625342	Mm.484784	NR_028497		Gm13315	OTTMUSG00000011384	lactate dehydrogenase A pseudogene	pseudo	0.010000	0.417910	
mm_7032.1	chr1	87099455	87099655	-	1	NA	NA	NA	2051	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.030000	0.582090	
mm_165686.1	chr3	90695897	90696097	+	1	NA	NA	NA	-276	NM_009114	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.010000	0.492537	
mm_12877.1	chr2	84670135	84670335	+	1	NA	NA	NA	473	NM_001033166	72657	Mm.259293	NM_001033166	ENSMUSG00000076437	Selenoh	2700094K13Rik|Selh	selenoprotein H	protein-coding	0.065000	0.641791	
mm_161362.1	chr14	57798117	57798317	+	1	NA	NA	NA	-1	NM_001142441	100041953	Mm.290178	NM_001142441	ENSMUSG00000061104	Sap18b	ENSMUSG00000061104|Gm10094	Sin3-associated polypeptide 18B	protein-coding	0.110000	0.621891	
mm_3093.1	chr1	134415359	134415559	+	1	NA	NA	NA	81	NM_028320	72674	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.160000	0.766169	
mm_70559.1	chr8	13074063	13074263	+	1	NA	NA	NA	13255	NM_025834	66901	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.000000	0.527363	
mm_109728.1	chr12	116405252	116405452	+	1	NA	NA	NA	-50	NM_133762	76044	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	0.095000	0.676617	
mm_129167.1	chr15	76247931	76248131	-	1	NA	NA	NA	-160	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.000000	0.641791	
mm_44448.1	chr5	21665195	21665395	-	1	NA	NA	NA	19311	NM_026034	67211	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	0.020000	0.398010	
mm_53041.1	chr6	124663034	124663234	+	1	NA	NA	NA	30	NM_145130	14792	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0.115000	0.726368	
mm_23072.1	chr3	36208045	36208245	+	1	NA	NA	NA	14130	NM_198192	229214	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	0.035000	0.512438	
mm_151938.1	chr19	5800700	5800900	-	1	NA	NA	NA	1872	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.010000	0.467662	
mm_27252.1	chr3	37125777	37125977	-	1	NA	NA	NA	77	NM_008366	16183	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	0.015000	0.557214	
mm_42635.1	chr5	118556352	118556552	+	1	NA	NA	NA	-4267	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.030000	0.542289	
mm_21463.1	chr2	160887939	160888139	-	1	NA	NA	NA	-129	NM_001199118	64899	Mm.292111	NM_022883	ENSMUSG00000027412	Lpin3	9130206L11Rik|AA438110|AV236139|mKIAA4023	lipin 3	protein-coding	0.060000	0.641791	
mm_163490.1	chr12	109453553	109453753	+	1	NA	NA	NA	198	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.100000	0.726368	
mm_99552.1	chr11	103638825	103639025	+	1	NA	NA	NA	-11	NR_131109	78629	Mm.398236	NR_131109		1700072I22Rik	-	RIKEN cDNA 1700072I22 gene	ncRNA	0.015000	0.502488	
mm_47244.1	chr5	121545631	121545831	-	1	NA	NA	NA	161	NM_010765	17165	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	0.175000	0.815920	
mm_100827.1	chr11	5390817	5391017	-	1	NA	NA	NA	-9177	NM_001290501	407821	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0.005000	0.363184	-74(CTTTATATACTG,+,0.00)
mm_113690.1	chr13	42916702	42916902	+	1	NA	NA	NA	50555	NM_001302636	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.075000	0.592040	
mm_47595.1	chr5	124862199	124862399	-	1	NA	NA	NA	-78	NM_144819	215707	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.100000	0.671642	
mm_159.1	chr1	12692477	12692677	+	1	NA	NA	NA	147	NM_001198566	240725	Mm.45563	NM_172294	ENSMUSG00000016918	Sulf1	AI467640|AW121680|mKIAA1077	sulfatase 1	protein-coding	0.015000	0.497512	
mm_111027.1	chr12	79132104	79132304	-	1	NA	NA	NA	1416	NM_009705	11847	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.010000	0.492537	
mm_124564.1	chr14	123627007	123627207	-	1	NA	NA	NA	37	NM_177393	338370	Mm.255348	NM_177393	ENSMUSG00000000197	Nalcn	A530023G15Rik|AI849508|Vgcnl1	sodium leak channel, non-selective	protein-coding	0.045000	0.616915	
mm_12659.1	chr2	75633889	75634089	+	1	NA	NA	NA	-25270	NM_146130	229279	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.015000	0.587065	
mm_127383.1	chr15	100870903	100871103	+	1	NA	NA	NA	358	NM_001077499	20273	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	0.180000	0.820896	
mm_63053.1	chr7	121905526	121905726	+	1	NA	NA	NA	40588	NR_073548	20277	Mm.7709	NM_011325	ENSMUSG00000030873	Scnn1b	-	sodium channel, nonvoltage-gated 1 beta	protein-coding	0.025000	0.547264	
mm_157098.1	chrX	9437335	9437535	-	1	NA	NA	NA	31889	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.373134	
mm_35462.1	chr4	40757720	40757920	-	1	NA	NA	NA	65	NM_021535	74255	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.155000	0.671642	-95(CCCTTTAGACCC,+,0.00)
mm_27289.1	chr3	41708661	41708861	-	1	NA	NA	NA	33753	NM_001081411	67161	Mm.331001	NM_026008	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik	sodium channel and clathrin linker 1	protein-coding	0.000000	0.303483	
mm_1801.1	chr1	80445818	80446018	+	1	NA	NA	NA	-14	NR_040460	72208	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	Jr3	RIKEN cDNA 1700016L21 gene	ncRNA	0.015000	0.457711	
mm_97647.1	chr11	79390251	79390451	+	1	NA	NA	NA	50459	NM_010897	18015	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0.020000	0.393035	
mm_36953.1	chr4	109109663	109109863	-	1	NA	NA	NA	8273	NM_173350	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.005000	0.323383	-81(TCCTTTAAAAAC,-,0.00),-80(CCTTTAAAAACA,+,0.00)
mm_118736.1	chr14	22308169	22308369	+	1	NA	NA	NA	234529	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.015000	0.338308	55(GGCTATATGAGC,-,0.00)
mm_36743.1	chr4	99929220	99929420	-	1	NA	NA	NA	-131	NM_028132	72157	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.045000	0.492537	-33(GTCTATATAAAG,-,0.00)
mm_14488.1	chr2	131909840	131910040	+	1	NA	NA	NA	12	NM_001278256	19122	Mm.648	NM_011170	ENSMUSG00000079037	Prnp	AA960666|AI325101|CD230|PrP|PrP<C>|PrPC|PrPSc|Prn-i|Prn-p|Sinc|prP27-30|prP33-35C	prion protein	protein-coding	0.110000	0.721393	
mm_79.1	chr1	6734751	6734951	+	1	NA	NA	NA	4800	NR_045188	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.020000	0.437811	
mm_74502.1	chr8	8226368	8226568	-	1	NA	NA	NA	434305	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.005000	0.368159	
mm_20772.1	chr2	143081138	143081338	-	1	NA	NA	NA	2746	NM_020595	57329	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	0.000000	0.378109	
mm_18365.1	chr2	59160554	59160754	-	1	NA	NA	NA	-196	NM_026361	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.050000	0.626866	
mm_115143.1	chr13	104817137	104817337	+	1	NA	NA	NA	67	NR_135272	67288	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	0.075000	0.606965	
mm_150093.1	chr19	29454353	29454553	+	1	NA	NA	NA	43534	NM_021396	58205	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.035000	0.527363	
mm_163308.1	chr12	4459541	4459741	+	1	NA	NA	NA	17541	NM_010881	17977	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0.040000	0.502488	
mm_63521.1	chr7	127903961	127904161	+	1	NA	NA	NA	-12	NM_009739	12041	Mm.425495	NM_009739	ENSMUSG00000030802	Bckdk	AI327402	branched chain ketoacid dehydrogenase kinase	protein-coding	0.080000	0.616915	
mm_162762.1	chr10	62055285	62055485	+	1	NA	NA	NA	55628	NM_027251	69894	Mm.294126	NM_027251	ENSMUSG00000020083	2010107G23Rik	AA545165	RIKEN cDNA 2010107G23 gene	protein-coding	0.020000	0.502488	
mm_136577.1	chr17	3482378	3482578	+	1	NA	NA	NA	163	NM_001286758	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.015000	0.527363	
mm_164062.1	chr14	117330998	117331198	+	1	NA	NA	NA	405801	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.010000	0.338308	83(CCTTAAATAGTT,+,0.00)
mm_92453.1	chr10	77795026	77795226	-	1	NA	NA	NA	4007	NM_001205034	100503388	Mm.482880	NM_001205034	ENSMUSG00000096380	Gm19668	-	predicted gene, 19668	protein-coding	0.005000	0.532338	
mm_159433.1	chr3	115080902	115081102	+	1	NA	NA	NA	37	NM_153157	229759	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding	0.025000	0.552239	
mm_68554.1	chr7	114416408	114416608	-	1	NA	NA	NA	1254	NM_011055	18576	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0.090000	0.646766	
mm_135893.1	chr16	65105575	65105775	-	1	NA	NA	NA	109	NM_008310	15557	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	0.125000	0.706468	
mm_144549.1	chr18	30283738	30283938	+	1	NA	NA	NA	10942	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding	0.005000	0.318408	
mm_80020.1	chr9	67935213	67935413	+	1	NA	NA	NA	90401	NR_045745	434412	Mm.490707	NR_045745	ENSMUSG00000111841	Gm20745	-	predicted gene, 20745	ncRNA	0.010000	0.472637	
mm_134154.1	chr16	10787893	10788093	-	1	NA	NA	NA	662	NM_013694	21959	Mm.206798	NM_013694	ENSMUSG00000043050	Tnp2	TP2|Tp-2	transition protein 2	protein-coding	0.010000	0.417910	
mm_92581.1	chr10	80018751	80018951	-	1	NA	NA	NA	-824	NM_027521	70719	Mm.243954	NM_027521	ENSMUSG00000035697	Hmha1	6330406L22Rik|AW539505|Ha-1	histocompatibility (minor) HA-1	protein-coding	0.030000	0.567164	
mm_148908.1	chr19	6950629	6950829	+	1	NA	NA	NA	8167	NM_001285453	12015	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.085000	0.626866	-3(CCTTTTCGAGGA,+,0.00)
mm_162480.1	chr1	134040205	134040405	+	1	NA	NA	NA	2790	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.015000	0.557214	
mm_136073.1	chr16	84783391	84783591	-	1	NA	NA	NA	9368	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.010000	0.482587	-34(CTCTTTAAATAG,-,0.00),-32(CTTTAAATAGCA,+,0.00)
mm_89111.1	chr10	84639657	84639857	+	1	NA	NA	NA	17320	NM_027423	70428	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	0.015000	0.472637	
mm_87228.1	chr10	40570242	40570442	+	1	NA	NA	NA	-20	NM_027572	70840	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.045000	0.656716	
mm_126758.1	chr15	85811251	85811451	+	1	NA	NA	NA	346	NM_001164626	72355	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	0.060000	0.601990	
mm_30490.1	chr3	155352726	155352926	-	1	NA	NA	NA	259392	NM_028938	74435	Mm.195711	NM_028938	ENSMUSG00000028182	Lrriq3	4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44	leucine-rich repeats and IQ motif containing 3	protein-coding	0.005000	0.393035	
mm_54658.1	chr6	39118071	39118271	-	1	NA	NA	NA	178	NM_172893	243771	Mm.268462	NM_172893	ENSMUSG00000038507	Parp12	9930021O16|AA409132|AA536654|ARTD12|PARP-12|Zc3hdc1	poly (ADP-ribose) polymerase family, member 12	protein-coding	0.120000	0.711443	
mm_125158.1	chr15	31224286	31224486	+	1	NA	NA	NA	1	NM_146057	223453	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.155000	0.756219	
mm_40001.1	chr5	32746435	32746635	+	1	NA	NA	NA	-193	NM_001347332	320951	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.005000	0.621891	
mm_49220.1	chr6	15781991	15782191	+	1	NA	NA	NA	61430	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.000000	0.363184	
mm_156056.1	chrX	109149944	109150144	+	1	NA	NA	NA	-46712	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.015000	0.378109	
mm_40858.1	chr5	73557215	73557415	+	1	NA	NA	NA	66289	NM_178896	100737	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.025000	0.487562	
mm_143523.1	chr17	73710328	73710528	-	1	NA	NA	NA	23	NM_027864	71685	Mm.271953	NM_027864	ENSMUSG00000024064	Galnt14	0610033M06Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14	protein-coding	0.125000	0.741294	
mm_141508.1	chr17	31644704	31644904	-	1	NA	NA	NA	-7599	NM_178224	12411	Mm.206417	NM_144855	ENSMUSG00000024039	Cbs	AI047524|AI303044|HIP4	cystathionine beta-synthase	protein-coding	0.055000	0.601990	
mm_93429.1	chr10	109008980	109009180	-	1	NA	NA	NA	1895	NM_009306	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding	0.040000	0.502488	
mm_81111.1	chr9	106453325	106453525	+	1	NA	NA	NA	-413	NM_021567	59092	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	0.050000	0.646766	
mm_48781.1	chr5	148552376	148552576	-	1	NA	NA	NA	312	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.155000	0.731343	
mm_85902.1	chr9	111056177	111056377	-	1	NA	NA	NA	967	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.045000	0.557214	
mm_142209.1	chr17	36989432	36989632	-	1	NA	NA	NA	-28	NM_001115075	240095	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	0.030000	0.502488	
mm_152531.1	chr19	11326706	11326906	-	1	NA	NA	NA	7889	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.000000	0.353234	
mm_81413.1	chr9	109054755	109054955	+	1	NA	NA	NA	-11	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.020000	0.517413	-44(GTCTTTAAGAGG,-,0.00),-43(TCTTTAAGAGGG,+,0.00)
mm_107487.1	chr12	38780158	38780358	+	1	NA	NA	NA	176	NM_007960	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.035000	0.552239	
mm_161088.1	chr12	87602744	87602944	+	1	NA	NA	NA	179	NM_001270793	100039087	Mm.458830	NM_001270792	ENSMUSG00000096276	Gm2042	-	predicted gene 2042	protein-coding	0.000000	0.328358	-3(GTTTATATACTG,+,0.00)
mm_129570.1	chr15	79658811	79659011	-	1	NA	NA	NA	45	NM_029407	75729	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	0.045000	0.527363	
mm_107433.1	chr12	35925594	35925794	+	1	NA	NA	NA	73	NM_207531	403205	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0.035000	0.447761	-40(GCTTATAAATCC,+,0.00)
mm_78201.1	chr9	21378011	21378211	+	1	NA	NA	NA	9579	NM_001277322	16201	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.005000	0.467662	-32(GCTTTTAGATTG,+,0.00)
mm_82465.1	chr9	15710161	15710361	-	1	NA	NA	NA	492	NM_172289	234967	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.040000	0.527363	
mm_76297.1	chr8	84204019	84204219	-	1	NA	NA	NA	-4399	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.020000	0.611940	
mm_151662.1	chr19	4139509	4139709	-	1	NA	NA	NA	0	NM_144532	73660	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	0.005000	0.527363	
mm_139180.1	chr17	47593463	47593663	+	1	NA	NA	NA	96	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.130000	0.721393	
mm_54226.1	chr6	28134270	28134470	-	1	NA	NA	NA	-1	NM_008174	14823	Mm.320732	NM_008174	ENSMUSG00000024211	Grm8	A230002O04|Gprc1h|mGluR8	glutamate receptor, metabotropic 8	protein-coding	0.040000	0.577114	
mm_34366.1	chr4	144892927	144893127	+	1	NA	NA	NA	-110	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.035000	0.437811	
mm_133303.1	chr16	77594691	77594891	+	1	NA	NA	NA	-4145	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.045000	0.552239	
mm_107511.1	chr12	40124674	40124874	+	1	NA	NA	NA	9454	NM_009132	20259	Mm.2416	NM_009132	ENSMUSG00000002565	Scin	AW545522|adseverin	scinderin	protein-coding	0.005000	0.502488	
mm_156137.1	chrX	128261180	128261380	+	1	NA	NA	NA	-524726	NM_001281537	73934	Mm.159093	NM_001281537	ENSMUSG00000043569	Cldn34c4	4930412D23Rik	claudin 34C4	protein-coding	0.015000	0.467662	
mm_14888.1	chr2	148875060	148875260	+	1	NA	NA	NA	352	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.085000	0.636816	
mm_77753.1	chr8	128488407	128488607	-	1	NA	NA	NA	129266	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.025000	0.497512	
mm_130001.1	chr15	86186823	86187023	-	1	NA	NA	NA	-782	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.005000	0.587065	
mm_117961.1	chr13	99470252	99470452	-	1	NA	NA	NA	46250	NM_008634	17755	Mm.4173	NM_008634	ENSMUSG00000052727	Map1b	A230055D22|AI843217|LC1|MAP5|Mtap-5|Mtap1b|Mtap5	microtubule-associated protein 1B	protein-coding	0.020000	0.472637	
mm_114709.1	chr13	83572278	83572478	+	1	NA	NA	NA	-1229	NM_001347577	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.015000	0.502488	
mm_85829.1	chr9	110422909	110423109	-	1	NA	NA	NA	3201	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.010000	0.507463	25(TCTCTTATAGGC,+,0.00),73(CCCCATTAAGGG,-,0.00)
mm_64590.1	chr7	3168989	3169189	-	1	NA	NA	NA	114	NM_001004153	245128	Mm.268551	NM_001004153	ENSMUSG00000054753	AU018091	-	expressed sequence AU018091	protein-coding	0.010000	0.532338	
mm_88267.1	chr10	74303030	74303230	+	1	NA	NA	NA	481263	NM_001142735	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0.010000	0.417910	
mm_84072.1	chr9	58201591	58201791	-	1	NA	NA	NA	24	NM_001161535	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.025000	0.532338	
mm_68723.1	chr7	120201387	120201587	-	1	NA	NA	NA	501	NM_016669	12971	Mm.9114	NM_016669	ENSMUSG00000030905	Crym	-	crystallin, mu	protein-coding	0.015000	0.547264	
mm_53679.1	chr6	142298327	142298527	+	1	NA	NA	NA	2	NM_010491	15874	Mm.415	NM_010491	ENSMUSG00000041681	Iapp	DAP	islet amyloid polypeptide	protein-coding	0.010000	0.457711	-34(GGATATATAAGA,-,0.00)
mm_148149.1	chr18	77531078	77531278	-	1	NA	NA	NA	33958	NM_001164504	225743	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0.010000	0.532338	
mm_42160.1	chr5	112255720	112255920	+	1	NA	NA	NA	0	NM_001312895	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.010000	0.577114	-33(GGCTATAAAATG,-,0.00)
mm_92782.1	chr10	81285681	81285881	-	1	NA	NA	NA	0	NM_001282096	27375	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.120000	0.731343	
mm_72107.1	chr8	71611108	71611308	+	1	NA	NA	NA	184	NM_146211	234407	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	0.140000	0.716418	-71(CTCCTTTAAGGC,-,0.00),-70(TCCTTTAAGGCG,+,0.00),-69(CCTTTAAGGCGC,+,0.00)
mm_120506.1	chr14	66296922	66297122	+	1	NA	NA	NA	-3	NM_029979	66854	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	0.085000	0.651741	
mm_36216.1	chr4	62502147	62502347	-	1	NA	NA	NA	-47	NM_024257	72748	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0.090000	0.641791	
mm_16196.1	chr2	173000020	173000220	+	1	NA	NA	NA	3	NM_175112	66679	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	0.110000	0.676617	
mm_169561.1	chr15	12574713	12574913	+	1	NA	NA	NA	17743	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.045000	0.502488	
mm_100516.1	chr11	120530597	120530797	+	1	NA	NA	NA	-30	NM_008101	14527	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.160000	0.766169	
mm_48743.1	chr5	147726242	147726442	-	1	NA	NA	NA	-354	NM_010228	14254	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.065000	0.661692	
mm_129305.1	chr15	77399123	77399323	-	1	NA	NA	NA	-113	NM_001164640	75761	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	0.010000	0.467662	
mm_18327.1	chr2	57124040	57124240	-	1	NA	NA	NA	-137	NM_001139509	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.185000	0.781095	
mm_5862.1	chr1	53773979	53774179	-	1	NA	NA	NA	11136	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.015000	0.427861	
mm_97346.1	chr11	77462529	77462729	+	1	NA	NA	NA	-1284	NM_139129	216961	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.115000	0.756219	
mm_82409.1	chr9	14780252	14780452	-	1	NA	NA	NA	2612	NM_019683	56503	Mm.395005	NM_019683	ENSMUSG00000031931	Ankrd49	AW060934|C86108|Gbif	ankyrin repeat domain 49	protein-coding	0.005000	0.427861	
mm_123878.1	chr14	72672946	72673146	-	1	NA	NA	NA	36957	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.000000	0.298507	10(GACTATATAAGC,-,0.00)
mm_54721.1	chr6	40435983	40436183	-	1	NA	NA	NA	50	NM_175528	243780	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0.130000	0.800995	
mm_124791.1	chr15	8109282	8109482	+	1	NA	NA	NA	69	NM_133227	170762	Mm.295168	NM_133227	ENSMUSG00000022142	Nup155	D930027M19Rik|mKIAA0791	nucleoporin 155	protein-coding	0.095000	0.582090	32(GTTTCTATAAGG,-,0.00)
mm_171033.1	chr2	90804568	90804768	-	1	NA	NA	NA	21924	NM_178755	271813	Mm.61146	NM_178755	ENSMUSG00000040812	Agbl2	4930524K04|A430081C19Rik|CCP2	ATP/GTP binding protein-like 2	protein-coding	0.070000	0.507463	
mm_1717.1	chr1	75236882	75237082	+	1	NA	NA	NA	280	NM_001159885	56812	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.045000	0.577114	33(GCCCTTTAGAGG,-,0.00),34(CCCTTTAGAGGT,+,0.00)
mm_36663.1	chr4	95051092	95051292	-	1	NA	NA	NA	1030	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.085000	0.572139	
mm_12593.1	chr2	74272413	74272613	+	1	NA	NA	NA	35204	NR_040501	73962	Mm.50289	NR_040501	ENSMUSG00000085405	4930441J16Rik	Astx1a|Astx1b|Astx1c	RIKEN cDNA 4930441J16 gene	ncRNA	0.010000	0.417910	
mm_169657.1	chr15	57314672	57314872	+	1	NA	NA	NA	162853	NM_172378	210463	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding	0.010000	0.502488	-28(CCATTTATAAGC,+,0.00),-28(CCATTTATAAGC,-,0.00)
mm_50360.1	chr6	48647225	48647425	+	1	NA	NA	NA	-36	NM_001286629	243374	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	0.005000	0.487562	
mm_42567.1	chr5	117155191	117155391	+	1	NA	NA	NA	21703	NM_183306	330177	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.000000	0.442786	
mm_116768.1	chr13	52820149	52820349	-	1	NA	NA	NA	-63044	NR_027893	105404	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0.010000	0.582090	
mm_113409.1	chr13	33964851	33965051	+	1	NA	NA	NA	292	NM_001163241	18105	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	NAD(P)H dehydrogenase, quinone 2	protein-coding	0.040000	0.527363	
mm_172087.1	chr6	149434488	149434688	-	1	NA	NA	NA	25604	NM_009753	12121	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	bicaudal D homolog 1 (Drosophila)	protein-coding	0.065000	0.502488	-33(TCCTTTTTAAGA,-,0.00)
mm_27745.1	chr3	69126976	69127176	-	1	NA	NA	NA	16	NM_008467	16649	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	0.120000	0.706468	
mm_105953.1	chr11	115297525	115297725	-	1	NA	NA	NA	-79	NM_178035	328035	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804|OTTMUSG00000021749	fatty acid desaturase domain family, member 6	protein-coding	0.080000	0.676617	
mm_84678.1	chr9	72090296	72090496	-	1	NA	NA	NA	20805	NM_001253862	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.005000	0.243781	-57(CATTTTAAAAGC,-,0.00)
mm_41501.1	chr5	92331705	92331905	+	1	NA	NA	NA	-22	NM_001310664	109979	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0.025000	0.517413	
mm_16744.1	chr2	9593974	9594174	-	1	NA	NA	NA	284526	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.025000	0.537313	
mm_122959.1	chr14	54968251	54968451	-	1	NA	NA	NA	-436	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.005000	0.552239	
mm_115736.1	chr13	17790521	17790721	-	1	NA	NA	NA	14476	NM_001081058	69562	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.005000	0.427861	
mm_1320.1	chr1	65100424	65100624	+	1	NA	NA	NA	2839	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.040000	0.567164	
mm_46971.1	chr5	115158278	115158478	-	1	NA	NA	NA	-202	NM_175403	109154	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0.120000	0.716418	
mm_106869.1	chr12	8010194	8010394	+	1	NA	NA	NA	32617	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.432836	
mm_170270.1	chr18	23521528	23521728	-	1	NA	NA	NA	24146	NM_001285810	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.035000	0.482587	
mm_91529.1	chr10	37141217	37141417	-	1	NA	NA	NA	-2391	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.045000	0.592040	
mm_46425.1	chr5	104309987	104310187	-	1	NA	NA	NA	10800	NM_008318	15891	Mm.4987	NM_008318	ENSMUSG00000029306	Ibsp	BSP|BSP II|BSPII|Bsp2	integrin binding sialoprotein	protein-coding	0.040000	0.482587	
mm_123705.1	chr14	69805155	69805355	-	1	NA	NA	NA	290	NM_153514	246710	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0.085000	0.671642	
mm_161065.1	chr12	72916787	72916987	-	1	NA	NA	NA	878	NM_029444	75801	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	0.000000	0.278607	
mm_91914.1	chr10	60294980	60295180	-	1	NA	NA	NA	10619	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.020000	0.532338	
mm_103440.1	chr11	75937639	75937839	-	1	NA	NA	NA	-11848	NM_001291159	380714	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	0.000000	0.557214	
mm_82285.1	chr9	7604014	7604214	-	1	NA	NA	NA	-24117	NM_013903	30800	Mm.390121	NM_013903	ENSMUSG00000018620	Mmp20	-	matrix metallopeptidase 20 (enamelysin)	protein-coding	0.025000	0.492537	
mm_122205.1	chr14	31781910	31782110	-	1	NA	NA	NA	48405	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.010000	0.398010	
mm_121802.1	chr14	20181682	20181882	-	1	NA	NA	NA	0	NM_021542	16529	Mm.68998	NM_021542	ENSMUSG00000023243	Kcnk5	KCNK5b|TASK-2	potassium channel, subfamily K, member 5	protein-coding	0.085000	0.676617	-31(GCTTAAAGAGCC,+,0.00)
mm_54771.1	chr6	41523872	41524072	-	1	NA	NA	NA	2196	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.532338	
mm_116425.1	chr13	41828993	41829193	-	1	NA	NA	NA	18395	NM_175417	109254	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.005000	0.477612	
mm_129507.1	chr15	79025766	79025966	-	1	NA	NA	NA	-2346	NM_008197	14958	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	0.035000	0.606965	48(GCCCTTTAAAAG,-,0.00),49(CCCTTTAAAAGC,+,0.00),49(CCCTTTAAAAGC,-,0.00),50(CCTTTAAAAGCC,+,0.00)
mm_55514.1	chr6	70074512	70074712	-	1	NA	NA	NA	717563	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.010000	0.437811	
mm_123176.1	chr14	57598517	57598717	-	1	NA	NA	NA	-27048	NM_026526	68043	Mm.45225	NM_026526	ENSMUSG00000021951	Eef1akmt1	2510005D08Rik|AW045965|Ayu21-96|Gt(pU21)96Imeg|GtAyu21-96|N6amt2	eukaryotic translation elongation factor 1 alpha lysine methyltransferase 1	protein-coding	0.000000	0.343284	
mm_86915.1	chr10	23796899	23797099	+	1	NA	NA	NA	13	NM_183116	76306	Mm.294271	NM_183116	ENSMUSG00000037455	Slc18b1	1110021L09Rik	solute carrier family 18, subfamily B, member 1	protein-coding	0.085000	0.631841	
mm_57501.1	chr6	125380381	125380581	-	1	NA	NA	NA	23	NM_198604	213522	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.070000	0.691542	
mm_135463.1	chr16	45795287	45795487	-	1	NA	NA	NA	48991	NM_153412	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology like domain, family B, member 2	protein-coding	0.010000	0.343284	
mm_153770.1	chr19	45660377	45660577	-	1	NA	NA	NA	-284	NM_013907	30838	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0.140000	0.766169	
mm_123732.1	chr14	70175218	70175418	-	1	NA	NA	NA	1497	NM_001253736	213019	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0.025000	0.606965	
mm_151038.1	chr19	47023407	47023607	+	1	NA	NA	NA	-8318	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.020000	0.492537	
mm_156908.1	chrX	169048857	169049057	+	1	NA	NA	NA	12346	NR_109847	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.000000	0.432836	
mm_117703.1	chr13	95038228	95038428	-	1	NA	NA	NA	61984	NM_172590	218460	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.010000	0.437811	
mm_81744.1	chr9	113919259	113919459	+	1	NA	NA	NA	-11575	NM_001083319	22221	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0.000000	0.313433	
mm_17112.1	chr2	24385105	24385305	-	1	NA	NA	NA	-192	NM_177611	215632	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.015000	0.552239	
mm_138401.1	chr17	35059051	35059251	+	1	NA	NA	NA	116	NM_016765	51793	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	0.070000	0.631841	
mm_144338.1	chr18	14706089	14706289	+	1	NA	NA	NA	38	NM_001163609	73677	Mm.87277	NM_001163609	ENSMUSG00000036743	Psma8	2410072D24Rik	proteasome (prosome, macropain) subunit, alpha type, 8	protein-coding	0.065000	0.616915	
mm_29433.1	chr3	109361879	109362079	-	1	NA	NA	NA	21296	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.020000	0.507463	40(CATTTTAAAAGC,-,0.00)
mm_105004.1	chr11	100376770	100376970	-	1	NA	NA	NA	-20729	NM_010404	15114	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.055000	0.666667	
mm_135729.1	chr16	55831051	55831251	-	1	NA	NA	NA	7490	NM_030612	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.000000	0.422886	
mm_93905.1	chr10	126905872	126906072	-	1	NA	NA	NA	-4601	NM_001159559	68876	Mm.276769	NM_026858	ENSMUSG00000025436	Xrcc6bp1	1110068E08Rik|2410012H02Rik|Atp23	XRCC6 binding protein 1	protein-coding	0.095000	0.606965	
mm_106.1	chr1	9601040	9601240	+	1	NA	NA	NA	-127	NM_178399	76982	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	0.030000	0.442786	
mm_172588.1	chr8	124211551	124211751	-	1	NA	NA	NA	-19743	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0.030000	0.482587	
mm_100778.1	chr11	4808226	4808426	-	1	NA	NA	NA	24809	NM_001252253	18016	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	0.020000	0.457711	
mm_50806.1	chr6	54292970	54293170	+	1	NA	NA	NA	20248	NM_023543	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.020000	0.532338	
mm_151345.1	chr19	55895462	55895662	+	1	NA	NA	NA	241	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.090000	0.706468	
mm_74798.1	chr8	22411201	22411401	-	1	NA	NA	NA	-39	NM_020560	57312	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	0.040000	0.497512	
mm_116600.1	chr13	48554618	48554818	-	1	NA	NA	NA	-16446	NR_029725	387244		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.005000	0.497512	-36(TCCTATATAAGT,-,0.00)
mm_165679.1	chr3	90669860	90670060	-	1	NA	NA	NA	889	NM_013650	20201	Mm.21567	NM_013650	ENSMUSG00000056054	S100a8	60B8Ag|AI323541|B8Ag|CFAg|CP-10|Caga|MRP8|p8	S100 calcium binding protein A8 (calgranulin A)	protein-coding	0.010000	0.457711	
mm_161355.1	chr14	55761810	55762010	+	1	NA	NA	NA	482	NM_020490	57260	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	0.040000	0.587065	
mm_108156.1	chr12	76328837	76329037	+	1	NA	NA	NA	4046	NM_001101471	238276	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.000000	0.517413	
mm_65671.1	chr7	28294488	28294688	-	1	NA	NA	NA	-3454	NM_175033	280621	Mm.212777	NM_175033	ENSMUSG00000046750	Selenov	Selv	selenoprotein V	protein-coding	0.130000	0.731343	
mm_155640.1	chrX	85249579	85249779	+	1	NA	NA	NA	2	NM_028046	71996	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	0.010000	0.487562	
mm_170728.1	chr2	151160662	151160862	+	1	NA	NA	NA	62517	NM_001097977	433486	Mm.422661	NM_001097977	ENSMUSG00000079006	Gm14151	OTTMUSG00000015806	predicted gene 14151	protein-coding	0.060000	0.636816	
mm_157194.1	chrX	12080453	12080653	-	1	NA	NA	NA	0	NM_175045	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.105000	0.731343	
mm_165770.1	chr3	122211069	122211269	-	1	NA	NA	NA	-34388	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.015000	0.442786	
mm_53809.1	chr6	146932804	146933004	+	1	NA	NA	NA	21517	NM_001164236	73344	Mm.391543	NM_028509	ENSMUSG00000040163	1700034J05Rik	-	RIKEN cDNA 1700034J05 gene	protein-coding	0.015000	0.407960	
mm_145789.1	chr18	65178235	65178435	+	1	NA	NA	NA	-70526	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.000000	0.318408	
mm_103396.1	chr11	75436709	75436909	-	1	NA	NA	NA	2692	NM_008878	18816	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	0.020000	0.557214	
mm_7225.1	chr1	93342669	93342869	-	1	NA	NA	NA	19	NM_080850	269224	Mm.379454	NM_080850	ENSMUSG00000026274	Pask	mKIAA0135	PAS domain containing serine/threonine kinase	protein-coding	0.080000	0.582090	
mm_67229.1	chr7	74555069	74555269	-	1	NA	NA	NA	-389	NM_001038643	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.030000	0.601990	
mm_41593.1	chr5	93270782	93270982	+	1	NA	NA	NA	3309	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0.050000	0.512438	
mm_49349.1	chr6	21986096	21986296	+	1	NA	NA	NA	286	NM_001081351	214642	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.020000	0.398010	
mm_56138.1	chr6	87731416	87731616	-	1	NA	NA	NA	647	NM_001159697	58229	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.085000	0.666667	
mm_28802.1	chr3	96219842	96220042	-	1	NA	NA	NA	26	NM_178213	621893		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	0.090000	0.597015	
mm_117906.1	chr13	99430251	99430451	-	1	NA	NA	NA	-17525	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.030000	0.497512	
mm_31023.1	chr4	40731189	40731389	+	1	NA	NA	NA	8359	NM_001164672	15502	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0.010000	0.323383	-94(GGCTCTTAAAGT,-,0.00)
mm_96641.1	chr11	69326606	69326806	+	1	NA	NA	NA	448	NM_010599	16499	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0.085000	0.706468	
mm_100395.1	chr11	119390551	119390751	+	1	NA	NA	NA	179	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.055000	0.606965	
mm_101511.1	chr11	32277669	32277869	-	1	NA	NA	NA	1169	NM_010405	15126	Mm.141758	NM_010405	ENSMUSG00000055609	Hba-x	AI450015|Hbz	hemoglobin X, alpha-like embryonic chain in Hba complex	protein-coding	0.035000	0.527363	
mm_32977.1	chr4	120134318	120134518	+	1	NA	NA	NA	-26788	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.015000	0.572139	
mm_116939.1	chr13	56088467	56088667	-	1	NA	NA	NA	46983	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.030000	0.368159	
mm_107090.1	chr12	17544614	17544814	+	1	NA	NA	NA	-159	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.135000	0.776119	
mm_101862.1	chr11	48871276	48871476	-	1	NA	NA	NA	-30	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding	0.050000	0.517413	
mm_159367.1	chr3	88378599	88378799	-	1	NA	NA	NA	2	NM_001032298	12097	Mm.425160	NM_001032298	ENSMUSG00000074486	Bglap2	BGP2|Bglap1|Bgp|Og2|mOC-B	bone gamma-carboxyglutamate protein 2	protein-coding	0.010000	0.562189	
mm_129835.1	chr15	83154193	83154393	-	1	NA	NA	NA	4648	NR_004432	104307	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.000000	0.532338	
mm_168547.1	chr11	62820130	62820330	+	1	NA	NA	NA	-23	NM_053169	94092	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	0.020000	0.537313	
mm_101427.1	chr11	29825565	29825765	-	1	NA	NA	NA	3	NM_176829	216622	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0.000000	0.467662	
mm_12979.1	chr2	90783100	90783300	+	1	NA	NA	NA	456	NM_178755	271813	Mm.61146	NM_178755	ENSMUSG00000040812	Agbl2	4930524K04|A430081C19Rik|CCP2	ATP/GTP binding protein-like 2	protein-coding	0.060000	0.592040	52(CCTTTTCTGCGG,+,0.00)
mm_13429.1	chr2	104820711	104820911	+	1	NA	NA	NA	-4115	NM_001123327	99003	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	0.010000	0.432836	50(GATCATTAAAGG,-,0.00)
mm_44446.1	chr5	21664973	21665173	-	1	NA	NA	NA	19089	NM_026034	67211	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	0.000000	0.278607	29(GACTTTAAAAAA,-,0.00)
mm_26182.1	chr3	138341854	138342054	+	1	NA	NA	NA	28668	NM_026945	69117	Mm.46265	NM_026945	ENSMUSG00000053054	Adh6a	1810009C16Rik|Adh5a	alcohol dehydrogenase 6A (class V)	protein-coding	0.020000	0.442786	
mm_152761.1	chr19	20379594	20379794	-	1	NA	NA	NA	10977	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.005000	0.363184	75(CTTTATATATGG,+,0.00)
mm_101783.1	chr11	45944835	45945035	-	1	NA	NA	NA	0	NM_028185	72290	Mm.249827	NM_028185	ENSMUSG00000044847	Lsm11	2210404M20Rik|AV079530	U7 snRNP-specific Sm-like protein LSM11	protein-coding	0.125000	0.756219	
mm_6124.1	chr1	64302958	64303158	-	1	NA	NA	NA	-181669	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.020000	0.532338	
mm_162498.1	chr1	138283451	138283651	+	1	NA	NA	NA	9813	NM_177397	338375	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.035000	0.507463	
mm_74554.1	chr8	10891959	10892159	-	1	NA	NA	NA	-7863	NR_102285	71624	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0.010000	0.462687	
mm_82347.1	chr9	13826828	13827028	-	1	NA	NA	NA	125	NR_037622	74360	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding	0.100000	0.651741	
mm_61492.1	chr7	75730424	75730624	+	1	NA	NA	NA	-117814	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.050000	0.502488	
mm_41164.1	chr5	87956162	87956362	+	1	NA	NA	NA	23089	NR_045924	73471	Mm.396240	NR_045924	ENSMUSG00000099605	1700066N21Rik	-	RIKEN cDNA 1700066N21 gene	ncRNA	0.015000	0.398010	
mm_148154.1	chr18	77565156	77565356	-	1	NA	NA	NA	-120	NM_001164504	225743	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0.145000	0.786070	
mm_129863.1	chr15	83366881	83367081	-	1	NA	NA	NA	316	NR_027980	69291	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0.100000	0.606965	
mm_41564.1	chr5	93133501	93133701	+	1	NA	NA	NA	40185	NM_001347377	52398	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.010000	0.452736	-96(CCCTTGATAAGG,-,0.00),-34(GGGTTTTAAAGT,-,0.00)
mm_158168.1	chrX	103616701	103616901	-	1	NA	NA	NA	6953	NR_028381	78878	Mm.259724	NR_028380	ENSMUSG00000086370	Ftx	B230206F22Rik|BB219131|NCRNA00182|Thcytx	Ftx transcript, Xist regulator (non-protein coding)	ncRNA	0.050000	0.582090	77(CTCCTTAAAGAG,-,0.00),79(CCTTAAAGAGAC,+,0.00)
mm_5441.1	chr1	34842961	34843161	-	1	NA	NA	NA	-11	NM_174997	214469	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.180000	0.766169	
mm_98976.1	chr11	98700086	98700286	+	1	NA	NA	NA	-1127	NM_009971	12985	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.015000	0.507463	
mm_86841.1	chr10	21400364	21400564	+	1	NA	NA	NA	23164	NM_178713	237320	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0.020000	0.457711	-34(TCCCATATAAAG,-,0.00),-32(CCATATAAAGGA,+,0.00)
mm_130245.1	chr15	96640022	96640222	-	1	NA	NA	NA	1840	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.010000	0.442786	
mm_9143.1	chr1	170885070	170885270	-	1	NA	NA	NA	370	NM_023173	80915	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ENSMUSG00000045460|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	0.105000	0.681592	
mm_51049.1	chr6	65627065	65627265	+	1	NA	NA	NA	36767	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.000000	0.253731	
mm_104263.1	chr11	88955307	88955507	-	1	NA	NA	NA	35	NM_029023	74617	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	0.085000	0.631841	
mm_55685.1	chr6	72626916	72627116	-	1	NA	NA	NA	-2272	NR_040422	100038714	Mm.321330	NR_040421		Gm15401	ENSMUSG00000072999|OTTMUSG00000021199	predicted gene 15401	ncRNA	0.030000	0.562189	
mm_141899.1	chr17	34895890	34896090	-	1	NA	NA	NA	1431	NM_198886	193736	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	0.030000	0.631841	
mm_144774.1	chr18	35829643	35829843	+	1	NA	NA	NA	-75	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.125000	0.751244	
mm_77815.1	chr9	3199835	3200035	+	1	NA	NA	NA	-122	NR_027988	114673	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0.060000	0.626866	
mm_19624.1	chr2	102813359	102813559	-	1	NA	NA	NA	88206	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.010000	0.308458	
mm_103903.1	chr11	83577042	83577242	-	1	NA	NA	NA	1494	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.010000	0.393035	
mm_86910.1	chr10	22814877	22815077	+	1	NA	NA	NA	5151	NM_011545	21412	Mm.16497	NM_011545	ENSMUSG00000045680	Tcf21	Pod-1|Pod1|bHLHa23|capsulin|epc|epicardin	transcription factor 21	protein-coding	0.005000	0.472637	-73(CTTTTTATAGCT,+,0.00)
mm_150298.1	chr19	34550814	34551014	+	1	NA	NA	NA	220	NM_008332	15958	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0.030000	0.502488	
mm_100097.1	chr11	115613393	115613593	+	1	NA	NA	NA	-524	NM_001243587	69674	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	0.020000	0.517413	11(GCCTAAAAAGGC,+,0.00)
mm_56550.1	chr6	100286225	100286425	-	1	NA	NA	NA	1033	NM_019743	56353	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.040000	0.427861	-7(TTTTTTAAAGCA,+,0.00)
mm_163584.1	chr13	35961291	35961491	+	1	NA	NA	NA	-6515	NM_029628	76487	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	0.000000	0.358209	
mm_162182.1	chrX	102866091	102866291	-	1	NA	NA	NA	162	NM_028496	73300	Mm.158984	NM_028496	ENSMUSG00000032894	1700031F05Rik	-	RIKEN cDNA 1700031F05 gene	protein-coding	0.010000	0.388060	45(GTTTTTATGGGT,+,0.00)
mm_42785.1	chr5	121463070	121463270	+	1	NA	NA	NA	-11	NM_001161626	77462	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	0.005000	0.592040	47(GTCTTTATGGCC,+,0.00)
mm_39728.1	chr5	28354751	28354951	+	1	NA	NA	NA	37662	NM_028234	381626	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	0.000000	0.308458	
mm_158209.1	chrX	105867816	105868016	-	1	NA	NA	NA	61456	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.020000	0.363184	
mm_47975.1	chr5	135910587	135910787	-	1	NA	NA	NA	22768	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.045000	0.512438	
mm_22500.1	chr3	7366584	7366784	+	1	NA	NA	NA	80	NM_008862	18767	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	0.090000	0.706468	
mm_130521.1	chr15	98881130	98881330	-	1	NA	NA	NA	184	NM_026967	69159	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding	0.095000	0.671642	
mm_98015.1	chr11	84879801	84880001	+	1	NA	NA	NA	294	NM_027388	70325	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	0.130000	0.721393	
mm_26808.1	chr3	10197122	10197322	-	1	NA	NA	NA	61	NM_011598	21884	Mm.26654	NM_011598	ENSMUSG00000027528	Fabp9	1700007P10Rik|Perf|Perf15|Tlbp	fatty acid binding protein 9, testis	protein-coding	0.035000	0.532338	-33(TTCTTTAAAAGA,-,0.00),-32(TCTTTAAAAGAA,+,0.00)
mm_32541.1	chr4	109280221	109280421	+	1	NA	NA	NA	46	NM_007943	13858	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0.135000	0.751244	
mm_1827.1	chr1	82603983	82604183	+	1	NA	NA	NA	17162	NM_007734	12828	Mm.389135	NM_007734	ENSMUSG00000079465	Col4a3	[a]3(IV)|alpha3(IV)	collagen, type IV, alpha 3	protein-coding	0.010000	0.497512	
mm_78435.1	chr9	32032302	32032502	+	1	NA	NA	NA	-83734	NM_001195632	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.170000	0.810945	
mm_149794.1	chr19	23141589	23141789	+	1	NA	NA	NA	463	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.150000	0.761194	
mm_161437.1	chr15	63847216	63847416	+	1	NA	NA	NA	7	NR_108051	74236	Mm.443274	NM_001167581	ENSMUSG00000062543	Gsdmcl1	1700022L20Rik|Gsdmdc2	gasdermin C-like 1	pseudo	0.055000	0.606965	
mm_23755.1	chr3	69963056	69963256	+	1	NA	NA	NA	-44457	NM_001018031	229389	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1	protein-coding	0.045000	0.626866	
mm_48321.1	chr5	138993003	138993203	-	1	NA	NA	NA	1850	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.090000	0.606965	
mm_22174.1	chr2	173211702	173211902	-	1	NA	NA	NA	7120	NM_021394	58203	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.005000	0.417910	
mm_57064.1	chr6	122570653	122570853	-	1	NA	NA	NA	16944	NM_009645	11628	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.010000	0.487562	
mm_10077.1	chr1	195131349	195131549	-	1	NA	NA	NA	121	NM_013499	12946	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	0.025000	0.497512	
mm_52111.1	chr6	97893950	97894150	+	1	NA	NA	NA	-35767	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.398010	
mm_38786.1	chr4	148087946	148088146	-	1	NA	NA	NA	18	NM_009642	11610	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.115000	0.696517	
mm_15634.1	chr2	162991493	162991693	+	1	NA	NA	NA	178	NM_001291152	27219	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	0.000000	0.616915	
mm_111495.1	chr12	99194618	99194818	-	1	NA	NA	NA	-31910	NR_038130	67639	Mm.87374	NR_038130		4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.000000	0.308458	
mm_53043.1	chr6	124701420	124701620	+	1	NA	NA	NA	10658	NM_013536	14791	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0.015000	0.552239	
mm_103060.1	chr11	69837086	69837286	-	1	NA	NA	NA	-1339	NM_026982	69186	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	0.090000	0.731343	
mm_83233.1	chr9	42398606	42398806	-	1	NA	NA	NA	1223	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.015000	0.462687	
mm_57782.1	chr6	129267925	129268125	-	1	NA	NA	NA	7344	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.010000	0.417910	
mm_27420.1	chr3	51517759	51517959	-	1	NA	NA	NA	33893	NM_016858	19338	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.015000	0.393035	
mm_132242.1	chr16	32750887	32751087	+	1	NA	NA	NA	15101	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.005000	0.422886	
mm_46306.1	chr5	100562747	100562947	-	1	NA	NA	NA	9358	NM_139198	231507	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.015000	0.512438	
mm_169715.1	chr15	77436439	77436639	-	1	NA	NA	NA	10921	NM_001024848	278679	Mm.440965	NM_001024848	ENSMUSG00000068252	Apol7b	-	apolipoprotein L 7b	protein-coding	0.015000	0.472637	
mm_77223.1	chr8	115703020	115703220	-	1	NA	NA	NA	3774	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.000000	0.353234	
mm_160042.1	chr6	138581938	138582138	-	1	NA	NA	NA	-70	NM_207222	109593	Mm.490545	NM_207222	ENSMUSG00000030226	Lmo3	AI854781|BB106490|Rbtn-3|Rbtn3	LIM domain only 3	protein-coding	0.030000	0.562189	
mm_170201.1	chr17	6941828	6942028	+	1	NA	NA	NA	6428	NM_001083945	100037282	Mm.29830	NM_001083945	ENSMUSG00000023806	Rsph3b	Rshl2b	radial spoke 3B homolog (Chlamydomonas)	protein-coding	0.030000	0.432836	
mm_113813.1	chr13	46669373	46669573	+	1	NA	NA	NA	-49	NM_001033192	97863	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	0.115000	0.726368	
mm_51127.1	chr6	68282224	68282424	+	1	NA	NA	NA	-716625	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.000000	0.288557	
mm_86553.1	chr10	10748870	10749070	+	1	NA	NA	NA	-2076	NR_046010	78056	Mm.271285	NR_046010		4930567K20Rik	1700038H22Rik	RIKEN cDNA 4930567K20 gene	ncRNA	0.015000	0.427861	
mm_156990.1	chrX	7420962	7421162	-	1	NA	NA	NA	-15	NR_027925	68355	Mm.45111	NR_027924		2010204K13Rik	0610010M13Rik|Cip7	RIKEN cDNA 2010204K13 gene	ncRNA	0.010000	0.388060	
mm_123367.1	chr14	63164874	63165074	-	1	NA	NA	NA	14604	NM_010191	14137	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	0.040000	0.636816	
mm_132618.1	chr16	38742194	38742394	+	1	NA	NA	NA	35	NM_001285793	56375	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0.140000	0.781095	
mm_104965.1	chr11	100145872	100146072	-	1	NA	NA	NA	-46	NM_008471	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.035000	0.562189	12(GGGCATAAAAAG,-,0.00),14(GCATAAAAAGCC,+,0.00)
mm_69929.1	chr7	142025860	142026060	-	1	NA	NA	NA	33781	NR_037291	100526509		NR_037291	ENSMUSG00000092652	Mir3104	mir-3104|mmu-mir-3104	microRNA 3104	ncRNA	0.025000	0.537313	
mm_136580.1	chr17	3557762	3557962	+	1	NA	NA	NA	38	NR_045302	68230	Mm.431352	NR_045302		1700102H20Rik	-	RIKEN cDNA 1700102H20 gene	ncRNA	0.055000	0.616915	
mm_121227.1	chr14	103055522	103055722	+	1	NA	NA	NA	8610	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.005000	0.398010	
mm_129212.1	chr15	76522274	76522474	-	1	NA	NA	NA	-245	NM_130893	170729	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.110000	0.766169	
mm_37365.1	chr4	120815632	120815832	-	1	NA	NA	NA	10009	NM_001277095	18046	Mm.435590	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0.010000	0.492537	
mm_111343.1	chr12	86884725	86884925	-	1	NA	NA	NA	-11	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.105000	0.676617	
mm_165202.1	chr2	32966888	32967088	+	1	NA	NA	NA	3687	NR_002898	104367	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0.080000	0.626866	
mm_144990.1	chr18	38296580	38296780	+	1	NA	NA	NA	45	NM_001164622	56736	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	0.080000	0.706468	
mm_93971.1	chr10	127302710	127302910	-	1	NA	NA	NA	8976	NM_001003913	216443	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	0.010000	0.487562	
mm_159140.1	chr2	85721161	85721361	+	1	NA	NA	NA	-146	NM_146572	258565	Mm.377570	NM_146572	ENSMUSG00000043226	Olfr1009	MOR175-3	olfactory receptor 1009	protein-coding	0.005000	0.318408	
mm_95875.1	chr11	58059229	58059429	+	1	NA	NA	NA	-44824	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.020000	0.552239	
mm_142499.1	chr17	46031738	46031938	-	1	NA	NA	NA	539	NM_001287058	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.145000	0.761194	
mm_125948.1	chr15	76248706	76248906	+	1	NA	NA	NA	615	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.030000	0.582090	
mm_6490.1	chr1	74124444	74124644	-	1	NA	NA	NA	-95	NM_001289895	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.145000	0.810945	
mm_167497.1	chr9	13296546	13296746	+	1	NA	NA	NA	49690	NM_025534	66396	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.045000	0.676617	
mm_69156.1	chr7	127144488	127144688	-	1	NA	NA	NA	-6765	NM_001037810	20737	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	0.010000	0.512438	
mm_368.1	chr1	33974561	33974761	+	1	NA	NA	NA	-37164	NM_133833	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.030000	0.522388	
mm_82972.1	chr9	35843977	35844177	-	1	NA	NA	NA	73	NM_029863	77080	Mm.159846	NM_029863	ENSMUSG00000047980	9230110F15Rik	Pate-A|Pate5|mANLP3	RIKEN cDNA 9230110F15 gene	protein-coding	0.005000	0.487562	
mm_30160.1	chr3	143936542	143936742	-	1	NA	NA	NA	-224499	NR_040405	621809	Mm.360134	NR_040405	ENSMUSG00000105279	Gm6260	EG621809	predicted gene 6260	ncRNA	0.005000	0.452736	-9(AGCTATTAAAGC,-,0.00)
mm_114407.1	chr13	64183766	64183966	+	1	NA	NA	NA	22000	NM_019986	56541	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	0.005000	0.457711	
mm_154554.1	chrM	15274	15474	-	1	NA	NA	NA	NA	NA									0.005000	0.333333	
mm_104436.1	chr11	94951596	94951796	-	1	NA	NA	NA	15472	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.010000	0.442786	
mm_23760.1	chr3	72868523	72868723	+	1	NA	NA	NA	98243	NM_001081137	69983	Mm.261054	NM_001081137	ENSMUSG00000027790	Sis	2010204N08Rik|SI|Si-s	sucrase isomaltase (alpha-glucosidase)	protein-coding	0.010000	0.388060	-35(CTGTATAAAAAG,-,0.00)
mm_163032.1	chr11	52224531	52224731	+	1	NA	NA	NA	-7364	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.035000	0.472637	
mm_162956.1	chr11	4236780	4236980	+	1	NA	NA	NA	95	NM_001013365	18413	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.030000	0.601990	
mm_34371.1	chr4	144893213	144893413	+	1	NA	NA	NA	176	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.025000	0.422886	
mm_66611.1	chr7	45466427	45466627	-	1	NA	NA	NA	371	NM_007527	12028	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.065000	0.701493	
mm_18807.1	chr2	73911214	73911414	-	1	NA	NA	NA	12	NM_175015	228033	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	0.115000	0.666667	
mm_112566.1	chr13	13529447	13529647	+	1	NA	NA	NA	-60862	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.025000	0.527363	
mm_22467.1	chr3	3657083	3657283	+	1	NA	NA	NA	149153	NM_013920	30942	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.005000	0.412935	
mm_13551.1	chr2	112239738	112239938	+	1	NA	NA	NA	-3	NM_207206	99010	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.170000	0.830846	
mm_118288.1	chr13	112927367	112927567	-	1	NA	NA	NA	-87	NM_028151	72198	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	0.070000	0.587065	
mm_31855.1	chr4	76995608	76995808	+	1	NA	NA	NA	1216187	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.020000	0.467662	-69(ACCCTTATAAGG,-,0.00),-67(CCTTATAAGGAA,+,0.00)
mm_45559.1	chr5	73191742	73191942	-	1	NA	NA	NA	64776	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.020000	0.462687	30(TTTTTTAAAGAG,+,0.00)
mm_126432.1	chr15	80578279	80578479	+	1	NA	NA	NA	5782	NM_001289442	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.015000	0.482587	
mm_156476.1	chrX	143684981	143685181	+	1	NA	NA	NA	-8206	NM_001195047	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding	0.020000	0.467662	
mm_35968.1	chr4	53144159	53144359	-	1	NA	NA	NA	15636	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.020000	0.567164	
mm_106417.1	chr11	119170892	119171092	-	1	NA	NA	NA	-16855	NR_105899	102465563		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA	0.005000	0.427861	
mm_91964.1	chr10	61273331	61273531	-	1	NA	NA	NA	7	NM_001081127	237360	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	0.160000	0.825871	
mm_29428.1	chr3	109021981	109022181	-	1	NA	NA	NA	5526	NM_001163567	329739	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.000000	0.447761	-74(CACTTTTAAAGC,-,0.00),-73(ACTTTTAAAGCT,+,0.00)
mm_118555.1	chr14	17784561	17784761	+	1	NA	NA	NA	123701	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.010000	0.502488	
mm_31576.1	chr4	57674511	57674711	+	1	NA	NA	NA	106363	NM_172868	242481	Mm.331630	NM_172868	ENSMUSG00000090053	Palm2	53-H12|B130066I24|R75368|pEN70	paralemmin 2	protein-coding	0.020000	0.502488	
mm_12640.1	chr2	74711825	74712025	+	1	NA	NA	NA	-68	NM_010468	15434	Mm.430708	NM_010468	ENSMUSG00000079277	Hoxd3	Hox-4.1|Hox-5.5	homeobox D3	protein-coding	0.075000	0.582090	-100(CTTTTTATGACC,+,0.00)
mm_50526.1	chr6	49045253	49045453	+	1	NA	NA	NA	8835	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.020000	0.542289	
mm_138531.1	chr17	35243022	35243222	+	1	NA	NA	NA	305	NM_001252457	53817	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	0.035000	0.517413	
mm_68699.1	chr7	119627670	119627870	-	1	NA	NA	NA	9942	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.005000	0.378109	
mm_50444.1	chr6	48874702	48874902	+	1	NA	NA	NA	-20453	NM_029638	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.010000	0.517413	
mm_101660.1	chr11	36677781	36677981	-	1	NA	NA	NA	266360	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.045000	0.522388	
mm_23262.1	chr3	51418293	51418493	+	1	NA	NA	NA	2377	NM_053089	74838	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0.000000	0.398010	
mm_5384.1	chr1	30950048	30950248	-	1	NA	NA	NA	-393	NM_011200	19243	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	0.065000	0.582090	
mm_125356.1	chr15	39391804	39392004	+	1	NA	NA	NA	193618	NM_053271	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.020000	0.452736	
mm_126675.1	chr15	84663111	84663311	+	1	NA	NA	NA	5	NM_001346662	109270	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0.120000	0.756219	
mm_89730.1	chr10	98986849	98987049	+	1	NA	NA	NA	71797	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.040000	0.477612	
mm_22672.1	chr3	14886592	14886792	+	1	NA	NA	NA	266	NM_009801	12349	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0.070000	0.631841	-33(GCCTATAAAAGC,-,0.00)
mm_144958.1	chr18	37815314	37815514	+	1	NA	NA	NA	335	NM_033582	93707	Mm.247203	NM_033582	ENSMUSG00000023036	Pcdhgc4	-	protocadherin gamma subfamily C, 4	protein-coding	0.075000	0.626866	
mm_134518.1	chr16	19218353	19218553	-	1	NA	NA	NA	68288	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.005000	0.388060	
mm_63734.1	chr7	130891143	130891343	+	1	NA	NA	NA	-17025	NR_106028	102466219		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0.000000	0.432836	-34(CACCATTTAAGG,-,0.00),-32(CCATTTAAGGCA,+,0.00)
mm_113683.1	chr13	42856762	42856962	+	1	NA	NA	NA	-9385	NM_001302636	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.005000	0.353234	-86(GCCTCTATATGC,-,0.00)
mm_63258.1	chr7	126655934	126656134	+	1	NA	NA	NA	6725	NM_029339	75565	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	0.010000	0.472637	
mm_81764.1	chr9	114401013	114401213	+	1	NA	NA	NA	18	NM_001200002	100504715	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	0.070000	0.681592	
mm_111902.1	chr12	108761292	108761492	-	1	NA	NA	NA	-31919	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.015000	0.532338	
mm_40535.1	chr5	57947907	57948107	+	1	NA	NA	NA	229926	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.010000	0.358209	
mm_53213.1	chr6	126761696	126761896	+	1	NA	NA	NA	-21122	NM_013568	16494	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	0.030000	0.457711	-70(ACGTCTAAAAAG,-,0.00)
mm_47428.1	chr5	123172185	123172385	-	1	NA	NA	NA	10401	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.015000	0.517413	
mm_27911.1	chr3	79531565	79531765	-	1	NA	NA	NA	36014	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.015000	0.512438	
mm_113874.1	chr13	48662968	48663168	+	1	NA	NA	NA	32	NM_007526	12022	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	0.185000	0.830846	
mm_31956.1	chr4	86844708	86844908	+	1	NA	NA	NA	12559	NM_009096	20104	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	0.020000	0.492537	
mm_27952.1	chr3	79825467	79825667	-	1	NA	NA	NA	17095	NM_027495	70652	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.025000	0.502488	
mm_138651.1	chr17	35867106	35867306	+	1	NA	NA	NA	591	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.040000	0.597015	
mm_133620.1	chr16	91561224	91561424	+	1	NA	NA	NA	14230	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.020000	0.497512	
mm_38908.1	chr4	149976396	149976596	-	1	NA	NA	NA	-21490	NM_029035	74646	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	0.005000	0.557214	
mm_153510.1	chr19	41370120	41370320	-	1	NA	NA	NA	14850	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.005000	0.527363	
mm_162616.1	chr1	183345448	183345648	+	1	NA	NA	NA	24017	NM_177389	338366	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	0.090000	0.661692	
mm_139172.1	chr17	47587487	47587687	+	1	NA	NA	NA	-5880	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.000000	0.323383	-7(TCTTTTTAAAGG,-,0.00),-6(CTTTTTAAAGGC,+,0.00)
mm_66684.1	chr7	45824609	45824809	-	1	NA	NA	NA	38	NM_145963	211480	Mm.68170	NM_145963	ENSMUSG00000058743	Kcnj14	A930026G01Rik|IRK4|Kir2.4	potassium inwardly-rectifying channel, subfamily J, member 14	protein-coding	0.020000	0.691542	
mm_1407.1	chr1	67152648	67152848	+	1	NA	NA	NA	29721	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.010000	0.452736	
mm_19359.1	chr2	91084240	91084440	-	1	NA	NA	NA	-12338	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.025000	0.592040	
mm_115268.1	chr13	111254914	111255114	+	1	NA	NA	NA	1	NM_175497	238880	Mm.107293	NM_175497	ENSMUSG00000055194	Actbl2	4732495G21Rik	actin, beta-like 2	protein-coding	0.020000	0.507463	
mm_74172.1	chr8	123442898	123443098	+	1	NA	NA	NA	42	NM_054046	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.075000	0.646766	
mm_51318.1	chr6	72314503	72314703	+	1	NA	NA	NA	9993	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.005000	0.407960	
mm_22936.1	chr3	31219964	31220164	+	1	NA	NA	NA	70144	NM_008770	18417	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.010000	0.388060	
mm_48145.1	chr5	137150511	137150711	-	1	NA	NA	NA	-34404	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.487562	
mm_48982.1	chr6	4755352	4755552	+	1	NA	NA	NA	8146	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.030000	0.507463	
mm_145373.1	chr18	56733923	56734123	+	1	NA	NA	NA	26210	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.015000	0.537313	
mm_56393.1	chr6	95718682	95718882	-	1	NA	NA	NA	64	NM_011507	20917	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding	0.100000	0.746269	
mm_67995.1	chr7	100894656	100894856	-	1	NA	NA	NA	-12347	NR_037289	100526508		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	0.125000	0.751244	
mm_128136.1	chr15	31467814	31468014	-	1	NA	NA	NA	-14225	NM_145852	252967	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.000000	0.447761	-34(AGCTCTTAAAGA,-,0.00),-33(GCTCTTAAAGAG,+,0.00)
mm_56633.1	chr6	113046070	113046270	-	1	NA	NA	NA	-157	NM_008188	14911	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0.075000	0.641791	
mm_99061.1	chr11	99155125	99155325	+	1	NA	NA	NA	-148	NM_007719	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.015000	0.552239	
mm_43005.1	chr5	123508384	123508584	+	1	NA	NA	NA	-1976	NM_198611	231727	Mm.484068	NM_198611	ENSMUSG00000029431	B3gnt4	1010001G17Rik|BGnT-4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding	0.090000	0.676617	
mm_21858.1	chr2	165884464	165884664	-	1	NA	NA	NA	274	NM_001252584	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.020000	0.482587	
mm_39097.1	chr4	154918892	154919092	-	1	NA	NA	NA	9085	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.005000	0.467662	
mm_112381.1	chr12	119237941	119238141	-	1	NA	NA	NA	235	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.055000	0.606965	41(GCCTTAAGGGCC,+,0.00)
mm_19850.1	chr2	113749001	113749201	-	1	NA	NA	NA	9547	NM_011824	23892	Mm.166318	NM_011824	ENSMUSG00000074934	Grem1	Cktsf1b1|Drm|Grem|ld	gremlin 1, DAN family BMP antagonist	protein-coding	0.040000	0.527363	
mm_35497.1	chr4	41047865	41048065	-	1	NA	NA	NA	171	NM_007473	11832	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	0.025000	0.572139	
mm_26944.1	chr3	20266370	20266570	-	1	NA	NA	NA	9263	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.015000	0.437811	
mm_18134.1	chr2	45017837	45018037	-	1	NA	NA	NA	5240	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.477612	
mm_144129.1	chr18	4920598	4920798	+	1	NA	NA	NA	108212	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA	0.105000	0.636816	
mm_117932.1	chr13	99434322	99434522	-	1	NA	NA	NA	-21596	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.010000	0.462687	
mm_130348.1	chr15	97749654	97749854	-	1	NA	NA	NA	17912	NM_001177810	223864	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.015000	0.542289	
mm_166768.1	chr6	134935053	134935253	+	1	NA	NA	NA	6061	NR_037955	381822	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	0.015000	0.432836	52(GACTCTTAAAAC,-,0.00)
mm_38086.1	chr4	134156810	134157010	-	1	NA	NA	NA	-28157	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.040000	0.567164	
mm_63987.1	chr7	140093310	140093510	+	1	NA	NA	NA	14	NM_009475	22264	Mm.439707	NM_009475	ENSMUSG00000025467	Prap1	Upa	proline-rich acidic protein 1	protein-coding	0.015000	0.527363	
mm_2731.1	chr1	128244142	128244342	+	1	NA	NA	NA	61	NM_026390	67812	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0.125000	0.686567	
mm_23041.1	chr3	34764071	34764271	+	1	NA	NA	NA	-7904	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA	0.015000	0.547264	
mm_140082.1	chr17	75182561	75182761	+	1	NA	NA	NA	3880	NM_001331235	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.020000	0.497512	-38(GACTTTAAAAGG,-,0.00),-37(ACTTTAAAAGGG,+,0.00)
mm_166740.1	chr6	124722027	124722227	-	1	NA	NA	NA	-3737	NR_029792	723944		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0.035000	0.572139	
mm_136558.1	chr17	3115139	3115339	+	1	NA	NA	NA	267	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.155000	0.786070	
mm_96917.1	chr11	70465261	70465461	+	1	NA	NA	NA	-5377	NM_023158	66102	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.050000	0.606965	
mm_78092.1	chr9	18312764	18312964	+	1	NA	NA	NA	20597	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.010000	0.363184	
mm_97712.1	chr11	80179066	80179266	+	1	NA	NA	NA	-4706	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.005000	0.422886	-30(GATTATAAAAGG,-,0.00)
mm_111178.1	chr12	83864208	83864408	-	1	NA	NA	NA	12504	NM_001272056	18222	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	numb homolog (Drosophila)	protein-coding	0.000000	0.199005	
mm_123653.1	chr14	69242338	69242538	-	1	NA	NA	NA	42665	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.010000	0.437811	
mm_146812.1	chr18	20771504	20771704	-	1	NA	NA	NA	-25200	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.005000	0.512438	-35(GCCCATATAAGA,-,0.00)
mm_158055.1	chrX	100626504	100626704	-	1	NA	NA	NA	539	NM_008446	16571	Mm.383091	NM_008446	ENSMUSG00000034311	Kif4	AI323435|D330050K22Rik|Kns4	kinesin family member 4	protein-coding	0.045000	0.572139	
mm_18978.1	chr2	76848856	76849056	-	1	NA	NA	NA	133591	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.015000	0.417910	40(GTCCATAAAGAG,-,0.00)
mm_77527.1	chr8	123013107	123013307	-	1	NA	NA	NA	29077	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.010000	0.432836	
mm_54942.1	chr6	48554624	48554824	-	1	NA	NA	NA	-75	NM_001110160	243371	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	0.070000	0.582090	-36(TTGTTTTTAAGG,-,0.00),-34(GTTTTTAAGGGA,+,0.00)
mm_170204.1	chr17	69541933	69542133	-	1	NA	NA	NA	102707	NM_001145192	320722	Mm.400254	NM_001145192	ENSMUSG00000091636	Akain1	A330050F15Rik	A kinase (PRKA) anchor inhibitor 1	protein-coding	0.040000	0.477612	-57(CTCCTTAAGAGG,-,0.00)
mm_166620.1	chr6	72356086	72356286	+	1	NA	NA	NA	703	NM_144916	232086	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	0.010000	0.582090	
mm_73503.1	chr8	107294308	107294508	+	1	NA	NA	NA	938	NM_133957	54446	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0.075000	0.651741	
mm_143926.1	chr17	85688145	85688345	-	1	NA	NA	NA	9	NM_011380	20472	Mm.5039	NM_011380	ENSMUSG00000024134	Six2	-	sine oculis-related homeobox 2	protein-coding	0.170000	0.731343	
mm_160630.1	chr9	106475017	106475217	-	1	NA	NA	NA	1832	NM_001311150	235587	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	0.040000	0.572139	
mm_48180.1	chr5	137333377	137333577	-	1	NA	NA	NA	105	NM_031406	83704	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	0.060000	0.676617	
mm_17649.1	chr2	31635807	31636007	-	1	NA	NA	NA	-4130	NM_001123362	381359	Mm.379512	NM_001123362	ENSMUSG00000079466	Prdm12	Gm998	PR domain containing 12	protein-coding	0.090000	0.621891	
mm_144104.1	chr18	3507908	3508108	+	1	NA	NA	NA	51	NM_026505	68010	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	0.125000	0.681592	
mm_89616.1	chr10	96094276	96094476	+	1	NA	NA	NA	-131831	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.005000	0.447761	
mm_145871.1	chr18	65466546	65466746	+	1	NA	NA	NA	35649	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.005000	0.412935	66(TCTTATATAGTT,+,0.00)
mm_25576.1	chr3	116859483	116859683	+	1	NA	NA	NA	16	NM_001113478	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.000000	0.452736	
mm_78158.1	chr9	21027830	21028030	+	1	NA	NA	NA	-1443	NM_023892	78369	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.010000	0.527363	
mm_115638.1	chr13	12258014	12258214	-	1	NA	NA	NA	-1	NM_001081128	238505	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.110000	0.666667	
mm_881.1	chr1	52500550	52500750	+	1	NA	NA	NA	-202	NM_008667	17936	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	0.155000	0.810945	
mm_152536.1	chr19	11327059	11327259	-	1	NA	NA	NA	7536	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.000000	0.477612	
mm_36333.1	chr4	72169483	72169683	-	1	NA	NA	NA	31310	NM_011599	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.000000	0.258706	
mm_78532.1	chr9	35116838	35117038	+	1	NA	NA	NA	-128	NM_009178	20443	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0.110000	0.746269	
mm_134079.1	chr16	8721578	8721778	-	1	NA	NA	NA	16664	NM_001003918	252870	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.020000	0.497512	
mm_109956.1	chr12	12177221	12177421	-	1	NA	NA	NA	-84818	NM_029758	76820	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.000000	0.517413	
mm_66102.1	chr7	31037837	31038037	-	1	NA	NA	NA	2380	NR_106017	102465635		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.010000	0.592040	
mm_112849.1	chr13	20836011	20836211	+	1	NA	NA	NA	41998	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.323383	43(CTTTTTAAAAGC,+,0.00),43(CTTTTTAAAAGC,-,0.00)
mm_75414.1	chr8	46534401	46534601	-	1	NA	NA	NA	-17568	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.055000	0.517413	
mm_4418.1	chr1	172500145	172500345	+	1	NA	NA	NA	-1	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.085000	0.671642	-63(GCCTTTAAACCC,+,0.00)
mm_65214.1	chr7	19698094	19698294	-	1	NA	NA	NA	204	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.025000	0.542289	
mm_168486.1	chr1	149506303	149506503	-	1	NA	NA	NA	416036	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.030000	0.477612	
mm_43150.1	chr5	125495954	125496154	+	1	NA	NA	NA	20181	NM_030210	78894	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0.010000	0.542289	
mm_125046.1	chr15	25828680	25828880	+	1	NA	NA	NA	-14518	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.030000	0.492537	
mm_115033.1	chr13	99247804	99248004	+	1	NA	NA	NA	63081	NM_001004149	238803	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.005000	0.457711	
mm_31560.1	chr4	57434394	57434594	+	1	NA	NA	NA	-70202	NR_038178	73349	Mm.393774	NR_038178		1700042G15Rik	-	RIKEN cDNA 1700042G15 gene	ncRNA	0.120000	0.751244	
mm_28350.1	chr3	89655055	89655255	-	1	NA	NA	NA	-59867	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.010000	0.537313	
mm_135518.1	chr16	48786310	48786510	-	1	NA	NA	NA	-14454	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.010000	0.437811	
mm_62607.1	chr7	106503521	106503721	+	1	NA	NA	NA	-62548	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.402985	
mm_8287.1	chr1	142367271	142367471	-	1	NA	NA	NA	-1273326	NM_020025	26878	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.010000	0.348259	11(GCATATAAAAAG,-,0.00)
mm_25120.1	chr3	102012258	102012458	+	1	NA	NA	NA	2213	NM_178777	18072	Mm.137286	NM_178777	ENSMUSG00000048540	Nhlh2	6230401I09Rik|Hen2|NSCL2|Nscl-2|bHLHa34	nescient helix loop helix 2	protein-coding	0.035000	0.597015	-96(CTCCATTAAAAC,-,0.00),-94(CCATTAAAACCC,+,0.00)
mm_105133.1	chr11	101425259	101425459	-	1	NA	NA	NA	-26	NM_026865	73635	Mm.472804	NM_026865	ENSMUSG00000097487	Ptges3l	1110069E20Rik|1700113I22Rik	prostaglandin E synthase 3 (cytosolic)-like	protein-coding	0.150000	0.736318	
mm_114227.1	chr13	56522372	56522572	+	1	NA	NA	NA	0	NM_001346732	213311	Mm.233904	NM_178674	ENSMUSG00000035509	Fbxl21	D630045D17Rik|FBL3B|FBXL3B|Psttm	F-box and leucine-rich repeat protein 21	protein-coding	0.085000	0.666667	
mm_24271.1	chr3	89202870	89203070	+	1	NA	NA	NA	45	NR_122037	14466	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	0.030000	0.492537	-50(GCCCCTTTAAGC,-,0.00),-48(CCCTTTAAGCCG,+,0.00)
mm_141525.1	chr17	31807955	31808155	-	1	NA	NA	NA	47737	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.005000	0.457711	
mm_165079.1	chr19	46356848	46357048	+	1	NA	NA	NA	68	NM_029186	75146	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	0.085000	0.721393	
mm_117322.1	chr13	67755051	67755251	-	1	NA	NA	NA	-17	NM_001001130	22746	Mm.288396	NM_001001130	ENSMUSG00000058331	Zfp85	KRAB19|Rslcan2|Zfp71|Zfp85-rs1	zinc finger protein 85	protein-coding	0.050000	0.502488	
mm_95778.1	chr11	54909699	54909899	+	1	NA	NA	NA	6945	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.015000	0.522388	
mm_119939.1	chr14	54982073	54982273	+	1	NA	NA	NA	-6397	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.030000	0.562189	
mm_33379.1	chr4	129556548	129556748	+	1	NA	NA	NA	1163	NR_106199	102465997		NR_106199	ENSMUSG00000099070	Mir8119	Gm27567|mmu-mir-8119	microRNA 8119	ncRNA	0.095000	0.676617	
mm_108485.1	chr12	83664113	83664313	+	1	NA	NA	NA	-24350	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.080000	0.452736	
mm_153754.1	chr19	45159207	45159407	-	1	NA	NA	NA	8592	NM_021901	21908	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	0.070000	0.626866	
mm_78283.1	chr9	22136169	22136369	+	1	NA	NA	NA	-523	NM_001102405	11433	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.005000	0.472637	
mm_119823.1	chr14	54232900	54233100	+	1	NA	NA	NA	20929	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.532338	
mm_158318.1	chrX	131850383	131850583	-	1	NA	NA	NA	1838510	NM_001105245	279653	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding	0.005000	0.447761	
mm_22154.1	chr2	172550838	172551038	-	1	NA	NA	NA	-53	NM_001159696	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding	0.110000	0.631841	-32(TCCCTTAAGAGG,-,0.00),-31(CCCTTAAGAGGC,+,0.00)
mm_83252.1	chr9	42401488	42401688	-	1	NA	NA	NA	-1659	NM_001324548	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.010000	0.527363	
mm_113935.1	chr13	49653017	49653217	+	1	NA	NA	NA	39	NR_073167	70930	Mm.258915	NM_001081350	ENSMUSG00000021392	Nol8	4921532D18Rik|5730412B09Rik	nucleolar protein 8	protein-coding	0.060000	0.457711	
mm_63592.1	chr7	128138302	128138502	+	1	NA	NA	NA	8834	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.005000	0.432836	
mm_171435.1	chr4	141053628	141053828	-	1	NA	NA	NA	-67	NM_172122	230872	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	0.035000	0.601990	
mm_33307.1	chr4	129057983	129058183	+	1	NA	NA	NA	-188	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.135000	0.756219	
mm_138183.1	chr17	34267825	34268025	+	1	NA	NA	NA	4698	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.025000	0.547264	
mm_124303.1	chr14	103070035	103070235	-	1	NA	NA	NA	-81	NM_001033242	211286	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0.080000	0.651741	
mm_126582.1	chr15	82292722	82292922	+	1	NA	NA	NA	-6162	NM_029066	74716	Mm.159315	NM_029066	ENSMUSG00000022455	Wbp2nl	4930521I23Rik|PAWP	WBP2 N-terminal like	protein-coding	0.005000	0.437811	
mm_6077.1	chr1	62703145	62703345	-	1	NA	NA	NA	-72	NM_001077406	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.145000	0.716418	
mm_53829.1	chr6	148047270	148047470	+	1	NA	NA	NA	-46	NM_001347516	330450	Mm.447274	NM_178797	ENSMUSG00000030303	Far2	A230046P18|AW048109|BC055759|Mlstd1	fatty acyl CoA reductase 2	protein-coding	0.080000	0.671642	
mm_135928.1	chr16	72264303	72264503	-	1	NA	NA	NA	-30076	NR_131115	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0.030000	0.412935	
mm_89934.1	chr10	111247774	111247974	+	1	NA	NA	NA	-50805	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.020000	0.393035	
mm_4090.1	chr1	167242316	167242516	+	1	NA	NA	NA	42711	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.005000	0.582090	
mm_92599.1	chr10	80102591	80102791	-	1	NA	NA	NA	11	NM_183426	216161	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch homolog 2 (Drosophila)	protein-coding	0.120000	0.711443	
mm_72742.1	chr8	85086802	85087002	+	1	NA	NA	NA	3633	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.025000	0.507463	
mm_50497.1	chr6	49032945	49033145	+	1	NA	NA	NA	-3473	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.005000	0.492537	
mm_51474.1	chr6	83005760	83005960	+	1	NA	NA	NA	27611	NM_010070	13448	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.010000	0.472637	
mm_90979.1	chr10	13552974	13553174	-	1	NA	NA	NA	68	NM_019961	56535	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	0.100000	0.646766	
mm_154815.1	chrX	13668985	13669185	+	1	NA	NA	NA	7722	NM_175669	319200	Mm.383294	NM_175669	ENSMUSG00000047678	Gpr82	-	G protein-coupled receptor 82	protein-coding	0.015000	0.447761	
mm_55987.1	chr6	85961515	85961715	-	1	NA	NA	NA	52	NM_028099	72102	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	0.125000	0.676617	
mm_158938.1	chr1	74885124	74885324	-	1	NA	NA	NA	184	NM_153111	260298	Mm.150496	NM_153111	ENSMUSG00000055197	Fev	Pet-1|Pet1|mPet-1	FEV (ETS oncogene family)	protein-coding	0.060000	0.691542	
mm_65849.1	chr7	29256443	29256643	-	1	NA	NA	NA	-8076	NM_028179	72275	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0.015000	0.522388	-90(CTGTTTAAAAAG,-,0.00),-88(GTTTAAAAAGAG,+,0.00)
mm_111652.1	chr12	102757689	102757889	-	1	NA	NA	NA	21	NM_001142939	100859931	Mm.291222	NM_001142939	ENSMUSG00000041716	Gm20604	AK010878-Moap1	predicted gene 20604	protein-coding	0.120000	0.656716	
mm_121594.1	chr14	7993913	7994113	-	1	NA	NA	NA	169	NM_007870	13421	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.005000	0.542289	-35(TGCTTTATAAGT,-,0.00)
mm_82995.1	chr9	36638502	36638702	-	1	NA	NA	NA	0	NM_001033325	235973	Mm.118804	NM_001033325	ENSMUSG00000070313	A630095E13Rik	Gm191|Pate14|Sslp-1|Sslp1	RIKEN cDNA A630095E13 gene	protein-coding	0.005000	0.482587	
mm_67389.1	chr7	79842521	79842721	-	1	NA	NA	NA	-269	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.015000	0.572139	
mm_20749.1	chr2	140066629	140066829	-	1	NA	NA	NA	76	NM_001159640	75812	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0.130000	0.686567	
mm_146582.1	chr18	7626685	7626885	-	1	NA	NA	NA	78	NM_001081287	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0.085000	0.656716	
mm_25988.1	chr3	133646552	133646752	+	1	NA	NA	NA	-102262	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.020000	0.447761	
mm_65914.1	chr7	30194968	30195168	-	1	NA	NA	NA	-20	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.095000	0.691542	
mm_53166.1	chr6	125322810	125323010	+	1	NA	NA	NA	1570	NM_011324	20276	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0.040000	0.532338	
mm_91745.1	chr10	49364338	49364538	-	1	NA	NA	NA	-268595	NR_046212	100418235	Mm.185993	NR_046212		C130030K03Rik	-	proteasome (prosome, macropain) subunit, alpha type 6 pseudogene	pseudo	0.000000	0.313433	-100(CACCATAAATGG,-,0.00)
mm_58796.1	chr7	16175249	16175449	+	1	NA	NA	NA	-46	NM_001277988	17537	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0.095000	0.696517	
mm_19752.1	chr2	104849846	104850046	-	1	NA	NA	NA	-96	NM_178695	228413	Mm.259609	NM_178695	ENSMUSG00000027171	Prrg4	9930111I18Rik|TMG4	proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	protein-coding	0.045000	0.457711	
mm_19110.1	chr2	79456203	79456403	-	1	NA	NA	NA	333	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.015000	0.393035	-24(GCTTTTAGAATG,+,0.00)
mm_143348.1	chr17	67047897	67048097	-	1	NA	NA	NA	-21762	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.010000	0.507463	
mm_23184.1	chr3	40949828	40950028	+	1	NA	NA	NA	-703	NM_001040399	214048	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0.190000	0.800995	
mm_94446.1	chr11	6366140	6366340	+	1	NA	NA	NA	-28885	NM_001005867	52915	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.025000	0.512438	33(GCATTTAGACAC,+,0.00)
mm_142295.1	chr17	40880251	40880451	-	1	NA	NA	NA	207	NM_027834	71583	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	0.035000	0.567164	
mm_58598.1	chr7	5038216	5038416	+	1	NA	NA	NA	130	NM_001039532	654801	Mm.333548	NM_001039532	ENSMUSG00000043290	Zfp784	C730049F21Rik|Znf784	zinc finger protein 784	protein-coding	0.115000	0.711443	
mm_153881.1	chr19	46932200	46932400	-	1	NA	NA	NA	30051	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.005000	0.288557	
mm_136826.1	chr17	12596252	12596452	+	1	NA	NA	NA	12163	NM_013667	20518	Mm.17322	NM_013667	ENSMUSG00000040966	Slc22a2	Oct2|Orct2	solute carrier family 22 (organic cation transporter), member 2	protein-coding	0.045000	0.706468	
mm_55832.1	chr6	83125004	83125204	-	1	NA	NA	NA	-75	NM_023547	70020	Mm.27814	NM_023547	ENSMUSG00000030034	Ino80b	2510009I23Rik|HMG1YL4|Hmga1l4|Papa1|Znhit4	INO80 complex subunit B	protein-coding	0.080000	0.616915	
mm_165431.1	chr2	153424599	153424799	-	1	NA	NA	NA	19780	NM_001001986	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.025000	0.567164	
mm_7219.1	chr1	93305768	93305968	-	1	NA	NA	NA	11	NM_178051	69821	Mm.52809	NM_178051	ENSMUSG00000026273	Mterf4	1810059A23Rik|4933412H03Rik|Mterfd2	mitochondrial transcription termination factor 4	protein-coding	0.085000	0.636816	
mm_59009.1	chr7	19212479	19212679	+	1	NA	NA	NA	41	NM_175668	319197	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	0.080000	0.726368	
mm_100974.1	chr11	6895016	6895216	-	1	NA	NA	NA	-168373	NM_009622	432530	Mm.259733	NM_009622	ENSMUSG00000020431	Adcy1	AC1|D11Bwg1392e|I-AC|brl|mKIAA4070	adenylate cyclase 1	protein-coding	0.005000	0.552239	
mm_75429.1	chr8	47288045	47288245	-	1	NA	NA	NA	1257	NM_001286376	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.095000	0.696517	
mm_107293.1	chr12	30478968	30479168	+	1	NA	NA	NA	-11710	NR_045491	69566	Mm.396405	NR_045491	ENSMUSG00000102098	2310016D03Rik	-	RIKEN cDNA 2310016D03 gene	ncRNA	0.005000	0.393035	
mm_70736.1	chr8	19062853	19063053	+	1	NA	NA	NA	1857	NM_183038	360214	Mm.271559	NM_183038	ENSMUSG00000061847	Defb39	BD-39	defensin beta 39	protein-coding	0.000000	0.462687	79(GGCTTTTTAAGA,-,0.00)
mm_32684.1	chr4	115828023	115828223	+	1	NA	NA	NA	31	NM_175308	100465	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	0.135000	0.761194	
mm_1211.1	chr1	62726654	62726854	+	1	NA	NA	NA	23437	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.005000	0.502488	-35(ATGTCTTAAAGG,-,0.00)
mm_82493.1	chr9	18674500	18674700	-	1	NA	NA	NA	81033	NM_146606	18322	Mm.246530	NM_146606	ENSMUSG00000054141	Olfr24	MOR132-1|MTPCR51	olfactory receptor 24	protein-coding	0.010000	0.577114	
mm_17788.1	chr2	33086135	33086335	-	1	NA	NA	NA	969	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.020000	0.472637	
mm_118002.1	chr13	100552572	100552772	-	1	NA	NA	NA	-174	NM_008756	18260	Mm.4807	NM_008756	ENSMUSG00000021638	Ocln	AI503564|Ocl	occludin	protein-coding	0.085000	0.691542	
mm_11119.1	chr2	28207981	28208181	+	1	NA	NA	NA	2392	NM_019498	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.015000	0.597015	
mm_42811.1	chr5	121835129	121835329	+	1	NA	NA	NA	875	NM_001306126	16923	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.010000	0.577114	
mm_143098.1	chr17	57080863	57081063	-	1	NA	NA	NA	-2453	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.040000	0.547264	
mm_146456.1	chr18	86395455	86395655	+	1	NA	NA	NA	603	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.150000	0.761194	
mm_92301.1	chr10	75032463	75032663	-	1	NA	NA	NA	-10	NM_001163534	71236	Mm.414817	NM_027730	ENSMUSG00000009070	Rsph14	4933431K05Rik|Rtdr1	radial spoke head homolog 14 (Chlamydomonas)	protein-coding	0.035000	0.616915	
mm_1359.1	chr1	66322014	66322214	+	1	NA	NA	NA	390	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.030000	0.472637	
mm_39691.1	chr5	26904750	26904950	+	1	NA	NA	NA	72	NM_001198886	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.050000	0.592040	
mm_151543.1	chr19	59260795	59260995	+	1	NA	NA	NA	17	NM_172523	214084	Mm.268797	NM_172523	ENSMUSG00000025094	Slc18a2	1110037L13Rik|9330105E13|Vmat2	solute carrier family 18 (vesicular monoamine), member 2	protein-coding	0.065000	0.676617	
mm_127363.1	chr15	100684531	100684731	+	1	NA	NA	NA	3289	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.030000	0.572139	
mm_92520.1	chr10	78578151	78578351	-	1	NA	NA	NA	3751	NM_173751	216136	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0.010000	0.442786	-43(TGGTTTAAAAAG,-,0.00)
mm_150768.1	chr19	44280867	44281067	+	1	NA	NA	NA	-12709	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.020000	0.522388	
mm_44845.1	chr5	34187557	34187757	-	1	NA	NA	NA	53	NM_010753	17122	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.135000	0.736318	
mm_87671.1	chr10	58812483	58812683	+	1	NA	NA	NA	-776	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding	0.115000	0.716418	
mm_69064.1	chr7	126898169	126898369	-	1	NA	NA	NA	9	NM_026827	68742	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0.120000	0.686567	
mm_142802.1	chr17	50420040	50420240	-	1	NA	NA	NA	-89407	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.040000	0.611940	
mm_81411.1	chr9	109052774	109052974	+	1	NA	NA	NA	-1992	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.010000	0.562189	
mm_73608.1	chr8	110079633	110079833	+	1	NA	NA	NA	-1	NM_175480	234725	Mm.87487	NM_175480	ENSMUSG00000044676	Zfp612	B230354B21Rik	zinc finger protein 612	protein-coding	0.115000	0.731343	
mm_146073.1	chr18	70568233	70568433	+	1	NA	NA	NA	41	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.145000	0.756219	
mm_32875.1	chr4	118527185	118527385	+	1	NA	NA	NA	10	NM_025572	66451	Mm.34431	NM_025572	ENSMUSG00000028536	2610528J11Rik	TEMP	RIKEN cDNA 2610528J11 gene	protein-coding	0.045000	0.651741	
mm_163377.1	chr12	44525574	44525774	+	1	NA	NA	NA	196789	NM_001146031	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.020000	0.492537	
mm_53826.1	chr6	147531275	147531475	+	1	NA	NA	NA	55504	NM_025911	67015	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding	0.005000	0.542289	
mm_95921.1	chr11	58274731	58274931	+	1	NA	NA	NA	-32238	NM_182996	103836	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	0.005000	0.522388	
mm_141463.1	chr17	30576312	30576512	-	1	NA	NA	NA	-125	NM_027060	224671	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0.080000	0.691542	
mm_58627.1	chr7	5080255	5080455	+	1	NA	NA	NA	120	NM_001252454	13854	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0.160000	0.791045	
mm_142852.1	chr17	51810770	51810970	-	1	NA	NA	NA	1184	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.005000	0.343284	
mm_78716.1	chr9	41531396	41531596	+	1	NA	NA	NA	71	NR_029790	723892		NR_029790	ENSMUSG00000093011	Mir100	Mirn100|mir-100|mmu-mir-100	microRNA 100	ncRNA	0.015000	0.512438	85(CCTTTTAGAGTG,+,0.00)
mm_86377.1	chr9	123844479	123844679	-	1	NA	NA	NA	7082	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.000000	0.462687	
mm_43737.1	chr5	139819997	139820197	+	1	NA	NA	NA	-5814	NM_001161548	231832	Mm.482655	NM_144914	ENSMUSG00000036687	Tmem184a	Sdmg1	transmembrane protein 184a	protein-coding	0.010000	0.542289	
mm_48289.1	chr5	138187107	138187307	-	1	NA	NA	NA	-21	NM_009315	21343	Mm.248517	NM_009315	ENSMUSG00000036980	Taf6	80kDa|AW549759|TAF(II)80|TAFII70|Taf2e|p80	TATA-box binding protein associated factor 6	protein-coding	0.060000	0.572139	
mm_35882.1	chr4	49538721	49538921	-	1	NA	NA	NA	10725	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.005000	0.492537	
mm_42224.1	chr5	113489015	113489215	+	1	NA	NA	NA	-61305	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.025000	0.542289	
mm_12046.1	chr2	59160760	59160960	+	1	NA	NA	NA	10	NM_175464	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.145000	0.791045	
mm_105547.1	chr11	106365426	106365626	-	1	NA	NA	NA	-9300	NM_029345	75573	Mm.159539	NM_029345	ENSMUSG00000009210	Prr29	2310007L24Rik	proline rich 29	protein-coding	0.035000	0.646766	
mm_152743.1	chr19	19067509	19067709	-	1	NA	NA	NA	43587	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.005000	0.383085	
mm_155004.1	chrX	41400594	41400794	+	1	NA	NA	NA	-607	NM_016886	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding	0.040000	0.482587	-90(GACTTTTAAAAA,-,0.00)
mm_114193.1	chr13	55784518	55784718	+	1	NA	NA	NA	39	NM_001252487	76856	Mm.159795	NM_029772	ENSMUSG00000021499	Catsper3	4921522D01Rik|CACRC	cation channel, sperm associated 3	protein-coding	0.020000	0.472637	-85(CCTCATAAAGCA,+,0.00)
mm_113392.1	chr13	33040266	33040466	+	1	NA	NA	NA	12952	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	0.000000	0.303483	
mm_54847.1	chr6	42589693	42589893	-	1	NA	NA	NA	7579	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.482587	
mm_94534.1	chr11	9119127	9119327	+	1	NA	NA	NA	720	NM_001159402	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.035000	0.432836	
mm_165286.1	chr2	84937162	84937362	+	1	NA	NA	NA	616	NM_021398	58207	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	0.030000	0.487562	
mm_158607.1	chrX	152342325	152342525	-	1	NA	NA	NA	59	NM_029836	52808	Mm.9997	NM_029836	ENSMUSG00000041096	Tspyl2	CDA1|CINAP|DENTT|DXBwg1396e|DXHXS1008E|E130307F10Rik	TSPY-like 2	protein-coding	0.070000	0.671642	
mm_171627.1	chr4	17217954	17218154	+	1	NA	NA	NA	-634839	NR_135158	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.010000	0.497512	
mm_10717.1	chr2	22804550	22804750	+	1	NA	NA	NA	30323	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.005000	0.432836	
mm_151769.1	chr19	5273005	5273205	-	1	NA	NA	NA	14	NM_153129	107975	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	0.175000	0.800995	
mm_115407.1	chr13	114334974	114335174	+	1	NA	NA	NA	53020	NM_010887	17993	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	0.000000	0.457711	
mm_88506.1	chr10	77892973	77893173	+	1	NA	NA	NA	-347	NR_015547	75188	Mm.348012	NM_029200	ENSMUSG00000096573	1700009J07Rik	4930535B06Rik	RIKEN cDNA 1700009J07 gene	ncRNA	0.015000	0.527363	
mm_4064.1	chr1	166126895	166127095	+	1	NA	NA	NA	903	NM_001033344	240892	Mm.35315	NM_001033344	ENSMUSG00000026564	Dusp27	C130085G02Rik|Gm209	dual specificity phosphatase 27 (putative)	protein-coding	0.020000	0.592040	
mm_147933.1	chr18	66002525	66002725	-	1	NA	NA	NA	10	NM_027400	70361	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	0.080000	0.676617	
mm_37075.1	chr4	116164311	116164511	-	1	NA	NA	NA	3187	NM_133681	66805	Mm.45994	NM_133681	ENSMUSG00000028699	Tspan1	9030418M05Rik	tetraspanin 1	protein-coding	0.030000	0.527363	
mm_131218.1	chr16	8837664	8837864	+	1	NA	NA	NA	7664	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.000000	0.422886	44(GTGTAGATAAGG,-,0.00)
mm_123877.1	chr14	72669301	72669501	-	1	NA	NA	NA	40602	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.005000	0.368159	
mm_89771.1	chr10	100099733	100099933	+	1	NA	NA	NA	84012	NM_013598	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.005000	0.368159	-51(GCCTCTATAAGG,-,0.00)
mm_6972.1	chr1	86308299	86308499	-	1	NA	NA	NA	5178	NM_145222	227327	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.000000	0.631841	
mm_130691.1	chr15	100681966	100682166	-	1	NA	NA	NA	5854	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.025000	0.492537	
mm_76610.1	chr8	91123926	91124126	-	1	NA	NA	NA	10001	NM_001302337	14339	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	0.010000	0.348259	68(GTATTTAAATGG,-,0.00)
mm_42707.1	chr5	120172724	120172924	+	1	NA	NA	NA	-33561	NR_045793	100503427	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	ENSMUSG00000072671	predicted gene 10390	ncRNA	0.020000	0.552239	
mm_18740.1	chr2	73012818	73013018	-	1	NA	NA	NA	-32472	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.060000	0.706468	
mm_147716.1	chr18	60812501	60812701	-	1	NA	NA	NA	525	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.000000	0.537313	
mm_85176.1	chr9	96525311	96525511	-	1	NA	NA	NA	-46736	NM_001311135	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.020000	0.512438	-55(TGCCCTATAAGG,-,0.00),-53(CCCTATAAGGTG,+,0.00)
mm_106995.1	chr12	11266404	11266604	+	1	NA	NA	NA	618	NM_025695	67241	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	0.165000	0.805970	
mm_55161.1	chr6	51864271	51864471	-	1	NA	NA	NA	148178	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.000000	0.472637	
mm_38823.1	chr4	148751728	148751928	-	1	NA	NA	NA	-52564	NM_001159344	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.030000	0.582090	
mm_125814.1	chr15	74932167	74932367	+	1	NA	NA	NA	-22784	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.025000	0.532338	
mm_121895.1	chr14	21751280	21751480	-	1	NA	NA	NA	849	NM_026283	67630	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	0.035000	0.497512	-33(GCTTCTTAAAGG,-,0.00),-32(CTTCTTAAAGGG,+,0.00)
mm_85110.1	chr9	95407014	95407214	-	1	NA	NA	NA	156	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.100000	0.716418	
mm_37425.1	chr4	122885913	122886113	-	1	NA	NA	NA	44	NM_007598	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.080000	0.646766	
mm_28880.1	chr3	97779164	97779364	-	1	NA	NA	NA	-11250	NM_178080	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.015000	0.398010	-65(GCCCATAAATAC,-,0.00)
mm_121294.1	chr14	105339782	105339982	+	1	NA	NA	NA	81209	NM_001190989	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.005000	0.398010	
mm_19097.1	chr2	79451843	79452043	-	1	NA	NA	NA	4693	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.000000	0.373134	
mm_153611.1	chr19	43968584	43968784	-	1	NA	NA	NA	17836	NM_030703	93721	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	0.020000	0.606965	
mm_159085.1	chr2	30002246	30002446	+	1	NA	NA	NA	6396	NR_105963	102465603		NR_105963	ENSMUSG00000098453	Mir6997	Gm27310|mmu-mir-6997	microRNA 6997	ncRNA	0.015000	0.492537	
mm_126802.1	chr15	87624175	87624375	+	1	NA	NA	NA	-955	NM_134096	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.125000	0.786070	
mm_126728.1	chr15	85634750	85634950	+	1	NA	NA	NA	-53029	NM_009528	22422	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	0.070000	0.611940	
mm_171573.1	chr4	147361410	147361610	+	1	NA	NA	NA	185644	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.010000	0.467662	
mm_17832.1	chr2	34262789	34262989	-	1	NA	NA	NA	109156	NM_001290576	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.000000	0.293532	
mm_136813.1	chr17	12393069	12393269	+	1	NA	NA	NA	14560	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.025000	0.537313	
mm_7871.1	chr1	132707245	132707445	-	1	NA	NA	NA	-19	NM_001160318	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	0.035000	0.512438	
mm_55521.1	chr6	70406921	70407121	-	1	NA	NA	NA	385154	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.412935	
mm_122905.1	chr14	54953427	54953627	-	1	NA	NA	NA	-4385	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.020000	0.522388	-76(CCTTTACAAGAC,+,0.00)
mm_131379.1	chr16	13986531	13986731	+	1	NA	NA	NA	-6	NM_144518	67254	Mm.216217	NM_144518	ENSMUSG00000044117	2900011O08Rik	MINP	RIKEN cDNA 2900011O08 gene	protein-coding	0.020000	0.567164	61(GCCCATTAAAAC,-,0.00),63(CCATTAAAACAC,+,0.00)
mm_58503.1	chr7	3712562	3712762	+	1	NA	NA	NA	7720	NM_011095	18733	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	0.015000	0.572139	
mm_128276.1	chr15	36794421	36794621	-	1	NA	NA	NA	17	NM_011740	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.050000	0.592040	49(GGACCTAAAAGG,-,0.00)
mm_8455.1	chr1	153140901	153141101	-	1	NA	NA	NA	45446	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.030000	0.527363	
mm_4191.1	chr1	171221680	171221880	+	1	NA	NA	NA	216	NM_001305585	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.020000	0.497512	
mm_84127.1	chr9	58869345	58869545	-	1	NA	NA	NA	45933	NM_001081192	330953	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0.015000	0.492537	
mm_97504.1	chr11	78465578	78465778	+	1	NA	NA	NA	-23	NM_026740	52466	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	0.060000	0.601990	
mm_164940.1	chr19	3377536	3377736	+	1	NA	NA	NA	-11221	NM_001039658	17771	Mm.209941	NM_010841	ENSMUSG00000024905	Mtl5	tesmin	metallothionein-like 5, testis-specific (tesmin)	protein-coding	0.010000	0.582090	
mm_79643.1	chr9	59559276	59559476	+	1	NA	NA	NA	-18961	NM_175235	76183	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0.020000	0.522388	
mm_114641.1	chr13	76579506	76579706	+	1	NA	NA	NA	194645	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.015000	0.497512	
mm_143375.1	chr17	67632639	67632839	-	1	NA	NA	NA	-16	NM_001033340	240131	Mm.295736	NM_001033340	ENSMUSG00000073375	Lrrc30	Gm326	leucine rich repeat containing 30	protein-coding	0.020000	0.557214	
mm_109859.1	chr12	4841459	4841659	-	1	NA	NA	NA	36	NM_016863	14226	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	0.120000	0.776119	
mm_110212.1	chr12	28582449	28582649	-	1	NA	NA	NA	-66	NM_053156	94041	Mm.84927	NM_053156	ENSMUSG00000020636	Allc	1700012B22Rik|Alc	allantoicase	protein-coding	0.015000	0.507463	
mm_26696.1	chr3	157534281	157534481	+	1	NA	NA	NA	-16	NM_017381	53861	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding	0.120000	0.706468	
mm_59579.1	chr7	28129062	28129262	+	1	NA	NA	NA	-304	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.010000	0.487562	38(CCCTCTAAAGAC,-,0.00)
mm_65517.1	chr7	25755166	25755366	-	1	NA	NA	NA	-546	NM_144922	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.075000	0.557214	
mm_86214.1	chr9	120012770	120012970	-	1	NA	NA	NA	10728	NM_011724	22437	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.015000	0.517413	
mm_39148.1	chr4	155397889	155398089	-	1	NA	NA	NA	80	NM_008072	14403	Mm.388925	NM_008072	ENSMUSG00000029054	Gabrd	AI853201	gamma-aminobutyric acid (GABA) A receptor, subunit delta	protein-coding	0.095000	0.706468	
mm_148687.1	chr19	5724721	5724921	+	1	NA	NA	NA	1496	NM_001114595	114601	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0.025000	0.611940	
mm_133143.1	chr16	70224918	70225118	+	1	NA	NA	NA	-88931	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.000000	0.492537	-35(GACCATAAAAAG,-,0.00),-33(CCATAAAAAGGG,+,0.00)
mm_170035.1	chr17	22739780	22739980	-	1	NA	NA	NA	77867	NR_030709	100042679	Mm.484007	NR_030709		Gm16386	EG545191|ENSMUSG00000073442|Gm21017	zinc finger protein 946 pseudogene	pseudo	0.045000	0.512438	
mm_9611.1	chr1	176213674	176213874	-	1	NA	NA	NA	168	NM_001195816	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	0.045000	0.572139	
mm_148523.1	chr19	4396391	4396591	+	1	NA	NA	NA	586	NM_001001984	225876	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0.065000	0.577114	
mm_32.1	chr1	6222605	6222805	+	1	NA	NA	NA	8043	NM_009826	12421	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	0.000000	0.353234	
mm_115137.1	chr13	104623359	104623559	+	1	NA	NA	NA	193494	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.015000	0.462687	
mm_158576.1	chrX	150654790	150654990	-	1	NA	NA	NA	2546	NM_019548	56191	Mm.3597	NM_019548	ENSMUSG00000025272	Tro	AA409408|Maged3|Maged3l|Tnn|Trol|magphinin	trophinin	protein-coding	0.005000	0.462687	
mm_157791.1	chrX	73854378	73854578	-	1	NA	NA	NA	26356	NM_008478	16728	Mm.260568	NM_008478	ENSMUSG00000031391	L1cam	CD171|L1|N-CAM-L1|NCAM-L1	L1 cell adhesion molecule	protein-coding	0.005000	0.537313	
mm_145086.1	chr18	42511409	42511609	+	1	NA	NA	NA	22	NR_110344	56070	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	0.085000	0.601990	
mm_23082.1	chr3	36861903	36862103	+	1	NA	NA	NA	-1103	NM_172679	229227	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0.005000	0.427861	
mm_47329.1	chr5	122491660	122491860	-	1	NA	NA	NA	10465	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.020000	0.417910	
mm_71409.1	chr8	46471652	46471852	+	1	NA	NA	NA	715	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.050000	0.497512	
mm_165884.1	chr4	42874901	42875101	-	1	NA	NA	NA	-798	NM_177785	277773	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	0.010000	0.427861	
mm_35629.1	chr4	43483613	43483813	-	1	NA	NA	NA	-4	NM_019436	54390	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	0.020000	0.547264	
mm_13296.1	chr2	102039526	102039726	+	1	NA	NA	NA	146834	NM_178886	241576	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.010000	0.487562	
mm_51121.1	chr6	68036701	68036901	+	1	NA	NA	NA	-471102	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.000000	0.437811	
mm_39042.1	chr4	152418656	152418856	-	1	NA	NA	NA	30099	NM_001252655	16498	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	0.015000	0.601990	
mm_61771.1	chr7	83408834	83409034	+	1	NA	NA	NA	-175997	NM_177695	233424	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.005000	0.447761	
mm_12492.1	chr2	71786930	71787130	+	1	NA	NA	NA	91	NM_001277970	16403	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	0.135000	0.786070	
mm_95322.1	chr11	46454871	46455071	+	1	NA	NA	NA	40	NM_134250	171285	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0.010000	0.507463	
mm_60045.1	chr7	31059550	31059750	+	1	NA	NA	NA	-285	NM_144556	243914	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	0.000000	0.527363	
mm_46699.1	chr5	110108182	110108382	-	1	NA	NA	NA	-85	NM_145147	107999	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	0.100000	0.671642	
mm_48304.1	chr5	138279888	138280088	-	1	NA	NA	NA	-51	NM_172412	71951	Mm.77066	NM_172412	ENSMUSG00000029510	Gpc2	2410016G05Rik	glypican 2 (cerebroglycan)	protein-coding	0.090000	0.651741	
mm_127699.1	chr15	102990820	102991020	+	1	NA	NA	NA	381	NM_010466	15426	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.100000	0.661692	
mm_64332.1	chr7	142283160	142283360	+	1	NA	NA	NA	-8897	NM_001199309	100043627	Mm.388589	NM_001199309	ENSMUSG00000056885	Gm4559	-	predicted gene 4559	protein-coding	0.025000	0.522388	
mm_167197.1	chr7	142660982	142661182	-	1	NA	NA	NA	189	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.060000	0.636816	
mm_49785.1	chr6	35177751	35177951	+	1	NA	NA	NA	235	NM_027513	70699	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	0.165000	0.761194	
mm_78330.1	chr9	25252490	25252690	+	1	NA	NA	NA	151	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.140000	0.721393	
mm_86984.1	chr10	25441703	25441903	+	1	NA	NA	NA	33435	NM_013511	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.040000	0.527363	
mm_73244.1	chr8	104250833	104251033	+	1	NA	NA	NA	72	NM_001286383	75458	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	0.085000	0.656716	
mm_945.1	chr1	56972472	56972672	+	1	NA	NA	NA	1103	NR_024325	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0.120000	0.701493	
mm_86520.1	chr10	7726588	7726788	+	1	NA	NA	NA	688	NM_011835	23924	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	0.025000	0.472637	
mm_97470.1	chr11	78301493	78301693	+	1	NA	NA	NA	2	NM_017407	54141	Mm.24250	NM_017407	ENSMUSG00000002055	Spag5	AI874642|D11Bhm180e|Deepest|MAP126|Mastrin|S17	sperm associated antigen 5	protein-coding	0.095000	0.582090	
mm_93223.1	chr10	95232608	95232808	-	1	NA	NA	NA	-86883	NR_131146	628062		NR_131146		Gm29684	-	predicted gene, 29684	ncRNA	0.005000	0.467662	
mm_158585.1	chrX	150813575	150813775	-	1	NA	NA	NA	28	NM_001199246	80884	Mm.22575	NM_030700	ENSMUSG00000025268	Maged2	4833439A22Rik|Mage-d2|ORF1	melanoma antigen, family D, 2	protein-coding	0.040000	0.631841	
mm_132408.1	chr16	35022365	35022565	+	1	NA	NA	NA	44	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.130000	0.761194	
mm_93141.1	chr10	92165044	92165244	-	1	NA	NA	NA	34	NR_028262	110333	Mm.429764	NR_028262		Rmst	100041799|AI853140|C230053E11Rik|D930049J19Rik|Dmt2|Gm3515|M2|Ncrms	rhabdomyosarcoma 2 associated transcript (non-coding RNA)	ncRNA	0.020000	0.527363	
mm_80158.1	chr9	70956592	70956792	+	1	NA	NA	NA	-4471	NM_001324472	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.005000	0.388060	
mm_154457.1	chrM	2385	2585	-	1	NA	NA	NA	NA	NA									0.050000	0.407960	11(CCATTAATAGCT,+,0.00),86(TCTTAAATAGGA,+,0.00)
mm_88815.1	chr10	80798536	80798736	+	1	NA	NA	NA	-10	NM_023900	78670	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.155000	0.671642	
mm_64840.1	chr7	12998091	12998291	-	1	NA	NA	NA	1	NM_009512	26459	Mm.10984	NM_009512	ENSMUSG00000030382	Slc27a5	FACVL3|FATP5|VLCS-H2|VLCSH2|Vlacsr	solute carrier family 27 (fatty acid transporter), member 5	protein-coding	0.015000	0.487562	38(TTCCTTAAAGGC,-,0.00)
mm_23977.1	chr3	85971129	85971329	+	1	NA	NA	NA	31262	NM_001001650	368202	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding	0.140000	0.796020	
mm_59161.1	chr7	24381568	24381768	+	1	NA	NA	NA	11405	NM_008433	16534	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0.025000	0.552239	
mm_57588.1	chr6	127768683	127768883	-	1	NA	NA	NA	376	NM_201371	381813	Mm.39750	NM_201371	ENSMUSG00000030350	Prmt8	Hrmt1l3|Hrmt1l4	protein arginine N-methyltransferase 8	protein-coding	0.050000	0.552239	-34(CTCTTTTAAAGC,-,0.00),-33(TCTTTTAAAGCC,+,0.00),30(GCTCTTATGGGC,+,0.00)
mm_14634.1	chr2	136781498	136781698	+	1	NA	NA	NA	68148	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.000000	0.378109	
mm_165769.1	chr3	121589284	121589484	-	1	NA	NA	NA	54101	NR_036456	100503044	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.020000	0.577114	-99(CCTTTTAAGCCT,+,0.00)
mm_161205.1	chr13	58610776	58610976	-	1	NA	NA	NA	1	NM_022317	114304	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.020000	0.562189	-35(TCATTTAAAAGG,-,0.00)
mm_112505.1	chr13	8885516	8885716	+	1	NA	NA	NA	10	NM_145360	319554	Mm.29847	NM_145360	ENSMUSG00000058258	Idi1	4832416K17Rik	isopentenyl-diphosphate delta isomerase	protein-coding	0.060000	0.646766	
mm_166723.1	chr6	120471851	120472051	+	1	NA	NA	NA	8754	NM_008359	16172	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.015000	0.572139	
mm_148839.1	chr19	6363853	6364053	+	1	NA	NA	NA	263	NR_122118	22668	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.140000	0.751244	
mm_168320.1	chr11	114668466	114668666	+	1	NA	NA	NA	23	NM_001048057	67671	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.075000	0.587065	
mm_100072.1	chr11	115440420	115440620	+	1	NA	NA	NA	-25	NM_001033775	432613	Mm.308822	NM_001033775	ENSMUSG00000070332	Trim80	4933422H20Rik|Trim47l	tripartite motif-containing 80	protein-coding	0.020000	0.532338	
mm_115238.1	chr13	109926800	109927000	+	1	NA	NA	NA	23091	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.020000	0.472637	
mm_116915.1	chr13	55512246	55512446	-	1	NA	NA	NA	1100	NM_026131	67399	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	0.015000	0.572139	
mm_172541.1	chr7	96817380	96817580	-	1	NA	NA	NA	-15931	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA	0.010000	0.562189	
mm_100834.1	chr11	5541671	5541871	-	1	NA	NA	NA	446	NM_134033	104479	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	0.105000	0.681592	
mm_1473.1	chr1	70217204	70217404	+	1	NA	NA	NA	265689	NM_025728	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	0.010000	0.328358	
mm_124698.1	chr15	6439239	6439439	+	1	NA	NA	NA	-5994	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.005000	0.383085	
mm_84925.1	chr9	81633345	81633545	-	1	NA	NA	NA	-893	NM_010482	15551	Mm.445308	NM_010482	ENSMUSG00000049511	Htr1b	-	5-hydroxytryptamine (serotonin) receptor 1B	protein-coding	0.070000	0.686567	-34(TAATATAAAAGG,-,0.00)
mm_14415.1	chr2	130406418	130406618	+	1	NA	NA	NA	-4	NM_025753	66766	Mm.174834	NM_025753	ENSMUSG00000049692	Tmem239	4933425O20Rik	transmembrane 239	protein-coding	0.010000	0.592040	
mm_113627.1	chr13	41677106	41677306	+	1	NA	NA	NA	26444	NM_001145878	328231	Mm.227476	NM_177808	ENSMUSG00000054258	Gm5082	A030008J09|EG328231	predicted gene 5082	protein-coding	0.005000	0.402985	
mm_63229.1	chr7	126447810	126448010	+	1	NA	NA	NA	15163	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.020000	0.582090	
mm_45715.1	chr5	84417204	84417404	-	1	NA	NA	NA	78	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.170000	0.766169	
mm_149634.1	chr19	17354883	17355083	+	1	NA	NA	NA	1684	NM_173442	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.015000	0.447761	
mm_5367.1	chr1	28780151	28780351	-	1	NA	NA	NA	1	NM_001013750	210962	Mm.214178	NM_001013750	ENSMUSG00000048411	Gm597	-	predicted gene 597	protein-coding	0.000000	0.502488	
mm_55151.1	chr6	51467720	51467920	-	1	NA	NA	NA	2074	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.000000	0.393035	
mm_141656.1	chr17	33713281	33713481	-	1	NA	NA	NA	5296	NM_145486	224703	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	0.010000	0.437811	
mm_72304.1	chr8	76902227	76902427	+	1	NA	NA	NA	-181	NM_001083906	110784	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0.060000	0.706468	
mm_111770.1	chr12	104035715	104035915	-	1	NA	NA	NA	8628	NM_026535	68054	Mm.20286	NM_026535	ENSMUSG00000041567	Serpina12	4632419J12Rik	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12	protein-coding	0.025000	0.532338	
mm_43498.1	chr5	136967817	136968017	+	1	NA	NA	NA	48	NM_021719	60363	Mm.87202	NM_021719	ENSMUSG00000001739	Cldn15	2210009B08Rik|BB107105	claudin 15	protein-coding	0.030000	0.572139	
mm_19595.1	chr2	102385480	102385680	-	1	NA	NA	NA	15320	NM_020267	80985	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	0.000000	0.238806	-41(TTTTTTAAGGTC,+,0.00),-5(TTTTTAATAGAG,+,0.00)
mm_44939.1	chr5	36398020	36398220	-	1	NA	NA	NA	19	NM_030889	81840	Mm.34113	NM_030889	ENSMUSG00000029093	Sorcs2	N28137|mKIAA1329	sortilin-related VPS10 domain containing receptor 2	protein-coding	0.130000	0.751244	
mm_116006.1	chr13	24604123	24604323	-	1	NA	NA	NA	544	NR_024599	76024	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347|OTTMUSG00000000601|OTTMUSG00000000602	X-linked lymphocyte-regulated 5 pseudogene	pseudo	0.015000	0.552239	
mm_94147.1	chr10	128743739	128743939	-	1	NA	NA	NA	217	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.075000	0.651741	
mm_131464.1	chr16	17026322	17026522	+	1	NA	NA	NA	43040	NM_001038663	26413	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	0.005000	0.353234	
mm_14463.1	chr2	131232660	131232860	+	1	NA	NA	NA	-1303	NM_001206383	228607	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0.005000	0.522388	
mm_38014.1	chr4	133753821	133754021	-	1	NA	NA	NA	-310	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.085000	0.746269	
mm_88851.1	chr10	80930544	80930744	+	1	NA	NA	NA	553	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.060000	0.597015	
mm_130670.1	chr15	100674558	100674758	-	1	NA	NA	NA	-5158	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.025000	0.507463	
mm_25171.1	chr3	103090136	103090336	+	1	NA	NA	NA	16222	NM_001033303	229665	Mm.331272	NM_001033303	ENSMUSG00000070385	Ampd1	AI553520|Ampd-1	adenosine monophosphate deaminase 1	protein-coding	0.015000	0.497512	
mm_42173.1	chr5	112261630	112261830	+	1	NA	NA	NA	5910	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.020000	0.462687	
mm_1640.1	chr1	74542769	74542969	+	1	NA	NA	NA	-20	NM_001081456	18802	Mm.290731	NM_148937	ENSMUSG00000026173	Plcd4	4921507K24Rik	phospholipase C, delta 4	protein-coding	0.010000	0.562189	-62(GGCCTTTAAGAG,-,0.00),-60(CCTTTAAGAGTT,+,0.00)
mm_18608.1	chr2	68366397	68366597	-	1	NA	NA	NA	105484	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.020000	0.467662	
mm_139876.1	chr17	70747910	70748110	+	1	NA	NA	NA	98767	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.045000	0.497512	
mm_48081.1	chr5	136883109	136883309	-	1	NA	NA	NA	6	NM_001346699	140709	Mm.295020	NM_024474	ENSMUSG00000004415	Col26a1	9430032K24Rik|BC002218|Col26a|Emid2|Emu2	collagen, type XXVI, alpha 1	protein-coding	0.070000	0.656716	
mm_141531.1	chr17	31848740	31848940	-	1	NA	NA	NA	6952	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.025000	0.597015	
mm_14627.1	chr2	136780976	136781176	+	1	NA	NA	NA	67626	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.015000	0.452736	-11(TCTTTTCTAGGC,+,0.00)
mm_108960.1	chr12	102383809	102384009	+	1	NA	NA	NA	55904	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.005000	0.472637	
mm_125703.1	chr15	67873684	67873884	+	1	NA	NA	NA	385072	NM_001145888	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.000000	0.368159	
mm_58921.1	chr7	17812605	17812805	+	1	NA	NA	NA	23	NM_025957	67084	Mm.33709	NM_025957	ENSMUSG00000023185	Ceacam14	1600021E03Rik|1600025E09Rik|AV033953	carcinoembryonic antigen-related cell adhesion molecule 14	protein-coding	0.010000	0.512438	
mm_19542.1	chr2	98662386	98662586	-	1	NA	NA	NA	1194829	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.030000	0.353234	
mm_77817.1	chr9	3258743	3258943	+	1	NA	NA	NA	-59030	NR_027988	114673	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0.015000	0.482587	65(CCTTTTCTGGGG,+,0.00)
mm_109427.1	chr12	110601368	110601568	+	1	NA	NA	NA	73	NM_030238	13424	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0.165000	0.771144	-29(GCCTTTAGGGCG,+,0.00)
mm_103910.1	chr11	83578531	83578731	-	1	NA	NA	NA	5	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.000000	0.427861	-100(TTTTATAAAAGG,-,0.00)
mm_170737.1	chr2	154285441	154285641	-	1	NA	NA	NA	-21703	NM_001025574	433492	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838|OTTMUSG00000015915	BPI fold containing family B, member 9B	protein-coding	0.010000	0.437811	
mm_11166.1	chr2	28557826	28558026	+	1	NA	NA	NA	5477	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.030000	0.547264	
mm_1967.1	chr1	86503484	86503684	+	1	NA	NA	NA	-23152	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.020000	0.577114	43(GGCTAGTAAAGG,-,0.00)
mm_20458.1	chr2	129365857	129366057	-	1	NA	NA	NA	-3945	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.020000	0.522388	
mm_49391.1	chr6	24890408	24890608	+	1	NA	NA	NA	32511	NM_028957	74468	Mm.251601	NM_028957	ENSMUSG00000029678	Hyal5	4933439A12Rik	hyaluronoglucosaminidase 5	protein-coding	0.000000	0.328358	
mm_16033.1	chr2	167656691	167656891	+	1	NA	NA	NA	4753	NM_145538	407243	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.015000	0.547264	
mm_125972.1	chr15	76294300	76294500	+	1	NA	NA	NA	-34	NM_001195537	100503915	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	ENSMUSG00000071724|Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	0.070000	0.641791	
mm_119775.1	chr14	54176155	54176355	+	1	NA	NA	NA	77674	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.457711	
mm_164266.1	chr15	101115727	101115927	+	1	NA	NA	NA	72	NM_144790	208258	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	0.000000	0.557214	
mm_123337.1	chr14	63130644	63130844	-	1	NA	NA	NA	8282	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.482587	
mm_123962.1	chr14	74939664	74939864	-	1	NA	NA	NA	8113	NM_001252132	380916	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.005000	0.293532	
mm_158722.1	chrX	162888350	162888550	-	1	NA	NA	NA	12	NM_025932	67043	Mm.44207	NM_025932	ENSMUSG00000031357	Syap1	2010110O17Rik|AW011796	synapse associated protein 1	protein-coding	0.100000	0.721393	
mm_135577.1	chr16	50430256	50430456	-	1	NA	NA	NA	2033	NM_027444	70508	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.060000	0.641791	
mm_9571.1	chr1	173979791	173979991	-	1	NA	NA	NA	2953	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.005000	0.398010	
mm_57369.1	chr6	124779614	124779814	-	1	NA	NA	NA	13	NM_001302555	16977	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	0.045000	0.512438	
mm_128946.1	chr15	74746693	74746893	-	1	NA	NA	NA	-106	NM_001081961	69462	Mm.64338	NM_001081961	ENSMUSG00000075605	Slurp2	2300005B03Rik|SLURP-2	secreted Ly6/Plaur domain containing 2	protein-coding	0.000000	0.562189	
mm_142726.1	chr17	48232533	48232733	-	1	NA	NA	NA	-106	NM_001347399	58217	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	0.005000	0.457711	
mm_53970.1	chr6	6169677	6169877	-	1	NA	NA	NA	47396	NM_015829	50799	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	0.010000	0.378109	
mm_63109.1	chr7	122671027	122671227	+	1	NA	NA	NA	-617	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.070000	0.646766	
mm_119433.1	chr14	46221046	46221246	+	1	NA	NA	NA	137119	NR_002875	218963	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	0.005000	0.343284	
mm_131488.1	chr16	17233475	17233675	+	1	NA	NA	NA	-12	NM_178922	58180	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0.105000	0.731343	
mm_63787.1	chr7	132405905	132406105	+	1	NA	NA	NA	-88850	NM_029935	77590	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.030000	0.557214	
mm_14792.1	chr2	145860662	145860862	+	1	NA	NA	NA	-42479	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.040000	0.592040	
mm_160458.1	chr8	108714645	108714845	+	1	NA	NA	NA	101	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.100000	0.691542	
mm_147076.1	chr18	35498791	35498991	-	1	NA	NA	NA	34	NM_030749	81500	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	0.080000	0.616915	
mm_62482.1	chr7	101879804	101880004	+	1	NA	NA	NA	-1421	NM_001291353	75430	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.005000	0.472637	
mm_58030.1	chr6	136662080	136662280	-	1	NA	NA	NA	-287	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.045000	0.582090	
mm_25850.1	chr3	129532540	129532740	+	1	NA	NA	NA	254	NM_130450	170439	Mm.314113	NM_130450	ENSMUSG00000041220	Elovl6	C77826|FAE|LCE	ELOVL family member 6, elongation of long chain fatty acids (yeast)	protein-coding	0.045000	0.467662	
mm_62861.1	chr7	114717199	114717399	+	1	NA	NA	NA	-1344	NM_054084	116903	Mm.273838	NM_054084	ENSMUSG00000030666	Calcb	CGRP2|Calc2	calcitonin-related polypeptide, beta	protein-coding	0.000000	0.512438	
mm_127174.1	chr15	98917575	98917775	+	1	NA	NA	NA	423	NM_029098	74775	Mm.385020	NM_029098	ENSMUSG00000022999	Lmbr1l	1110013E13Rik|AA415653|D15Ertd735e|Limr	limb region 1 like	protein-coding	0.110000	0.721393	
mm_155351.1	chrX	68761756	68761956	+	1	NA	NA	NA	17	NM_001166619	207854	Mm.284945	NM_174993	ENSMUSG00000062170	Fmr1nb	3830422N12Rik|NY-SAR-35|NYSAR35	fragile X mental retardation 1 neighbor	protein-coding	0.050000	0.527363	
mm_67655.1	chr7	84689856	84690056	-	1	NA	NA	NA	316	NR_038175	72495	Mm.382914	NR_038175	ENSMUSG00000085236	2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA	0.130000	0.686567	
mm_16779.1	chr2	9887685	9887885	-	1	NA	NA	NA	1755	NR_040511	77682	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA	0.020000	0.597015	
mm_129826.1	chr15	83127376	83127576	-	1	NA	NA	NA	-4675	NM_029101	74778	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.010000	0.412935	
mm_129020.1	chr15	74953962	74954162	-	1	NA	NA	NA	-989	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.010000	0.527363	-34(CACTATAAAAGG,-,0.00)
mm_130378.1	chr15	97844140	97844340	-	1	NA	NA	NA	262	NM_001204279	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.030000	0.572139	
mm_125821.1	chr15	74957031	74957231	+	1	NA	NA	NA	2025	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.015000	0.527363	
mm_130974.1	chr15	103334209	103334409	-	1	NA	NA	NA	5777	NM_013866	29813	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.005000	0.631841	
mm_66253.1	chr7	35646356	35646556	-	1	NA	NA	NA	1026	NM_019746	56330	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0.015000	0.298507	
mm_166308.1	chr5	106351470	106351670	+	1	NA	NA	NA	30230	NR_136913	102635633	Mm.383511	NR_136913	ENSMUSG00000105508	Gm32921	-	predicted gene, 32921	ncRNA	0.035000	0.552239	13(CTCTCTAAGAGG,-,0.00)
mm_21153.1	chr2	154421214	154421414	-	1	NA	NA	NA	-13230	NM_009228	20648	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	0.015000	0.542289	44(CCATTTATGGAG,+,0.00)
mm_29370.1	chr3	108711342	108711542	-	1	NA	NA	NA	10857	NM_029522	76123	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0.010000	0.427861	
mm_164916.1	chr18	75367322	75367522	+	1	NA	NA	NA	57	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.145000	0.761194	
mm_138700.1	chr17	35997918	35998118	+	1	NA	NA	NA	3514	NR_015618	77810	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0.015000	0.552239	
mm_40101.1	chr5	34584882	34585082	+	1	NA	NA	NA	10831	NR_106111	102466999		NR_106111	ENSMUSG00000099082	Mir7036b	Gm27625|mmu-mir-7036b	microRNA 7036b	ncRNA	0.000000	0.268657	24(GGGTATTAAAGT,-,0.00)
mm_34279.1	chr4	141424514	141424714	+	1	NA	NA	NA	3835	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.000000	0.547264	
mm_92940.1	chr10	84576050	84576250	-	1	NA	NA	NA	-797	NM_146008	216198	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	0.025000	0.497512	
mm_5251.1	chr1	16619174	16619374	-	1	NA	NA	NA	64	NM_025773	66799	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0.115000	0.726368	
mm_4924.1	chr1	190942312	190942512	+	1	NA	NA	NA	13907	NR_037579	52477	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	0.005000	0.383085	15(TCCTTTTTAAGA,-,0.00)
mm_46700.1	chr5	110118846	110119046	-	1	NA	NA	NA	8854	NM_001163996	675812	Mm.442122	NM_001163996	ENSMUSG00000023284	Zfp605	A830023I12Rik	zinc finger protein 605	protein-coding	0.050000	0.422886	
mm_91480.1	chr10	34388712	34388912	-	1	NA	NA	NA	-1169	NM_009925	12813	Mm.443177	NM_009925	ENSMUSG00000039462	Col10a1	Col10|Col10a-1	collagen, type X, alpha 1	protein-coding	0.005000	0.348259	
mm_130940.1	chr15	103239750	103239950	-	1	NA	NA	NA	-34	NM_001076789	12419	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0.095000	0.636816	
mm_81064.1	chr9	106171222	106171422	+	1	NA	NA	NA	393	NM_029896	77305	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	0.065000	0.562189	
mm_75039.1	chr8	32649546	32649746	-	1	NA	NA	NA	300380	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding	0.005000	0.293532	
mm_88531.1	chr10	78352465	78352665	+	1	NA	NA	NA	-865	NM_053014	28169	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.080000	0.691542	
mm_149897.1	chr19	25505654	25505854	+	1	NA	NA	NA	48	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.055000	0.557214	
mm_24099.1	chr3	88055388	88055588	+	1	NA	NA	NA	3007	NM_144897	246703	Mm.205996	NM_144897	ENSMUSG00000028070	Apoa1bp	AA087124|AI-BP|AIBP|Apoa1ip|ESTM37|Naxe	apolipoprotein A-I binding protein	protein-coding	0.015000	0.507463	
mm_133051.1	chr16	57572073	57572273	+	1	NA	NA	NA	22931	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.020000	0.482587	
mm_86089.1	chr9	114933751	114933951	-	1	NA	NA	NA	136	NM_175380	333433	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	0.080000	0.681592	
mm_43449.1	chr5	136136056	136136256	+	1	NA	NA	NA	11	NM_001347492	72041	Mm.486605	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	0.100000	0.616915	
mm_104849.1	chr11	99285162	99285362	-	1	NA	NA	NA	-24	NM_029393	75706	Mm.46378	NM_029393	ENSMUSG00000020913	Krt24	2310058N18Rik|2310075C18Rik	keratin 24	protein-coding	0.015000	0.482587	-33(GTGTATATAAGG,-,0.00)
mm_80628.1	chr9	89066949	89067149	+	1	NA	NA	NA	25786	NM_001170884	666747	Mm.425592	NM_001170884	ENSMUSG00000079162	Trim43b	EG666747|Gm8269	tripartite motif-containing 43B	protein-coding	0.045000	0.547264	-72(TCTTTTAGGCCG,+,0.00)
mm_61808.1	chr7	87246614	87246814	+	1	NA	NA	NA	65	NM_001285833	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	0.090000	0.746269	
mm_162725.1	chr10	40421814	40422014	+	1	NA	NA	NA	72606	NM_001291816	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.010000	0.552239	-93(GCCCTTTAAGAG,-,0.00),-92(CCCTTTAAGAGG,-,0.00),-91(CCTTTAAGAGGC,+,0.00)
mm_81702.1	chr9	111271773	111271973	+	1	NA	NA	NA	28	NM_175266	77781	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	0.070000	0.631841	
mm_46364.1	chr5	103377221	103377421	-	1	NA	NA	NA	-47871	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.000000	0.502488	
mm_58222.1	chr6	144209379	144209579	-	1	NA	NA	NA	89	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.015000	0.527363	
mm_70103.1	chr7	142661180	142661380	-	1	NA	NA	NA	-9	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.070000	0.567164	
mm_46096.1	chr5	92347194	92347394	-	1	NA	NA	NA	1595	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.020000	0.547264	-93(AGGTCTAAAAGG,-,0.00)
mm_29588.1	chr3	117868813	117869013	-	1	NA	NA	NA	23	NM_001190156	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.140000	0.805970	
mm_23320.1	chr3	53463574	53463774	+	1	NA	NA	NA	-143	NM_173382	212127	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	0.075000	0.626866	-7(GGGCATTTAGGG,-,0.00)
mm_138694.1	chr17	35979986	35980186	+	1	NA	NA	NA	131	NM_008136	14670	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	0.155000	0.825871	
mm_97984.1	chr11	83885997	83886197	+	1	NA	NA	NA	33137	NM_001291269	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.000000	0.442786	
mm_101299.1	chr11	22286743	22286943	-	1	NA	NA	NA	-48	NM_001252515	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0.135000	0.776119	
mm_145339.1	chr18	56469111	56469311	+	1	NA	NA	NA	37079	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.025000	0.631841	
mm_114055.1	chr13	54371246	54371446	+	1	NA	NA	NA	-3	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.040000	0.597015	
mm_168699.1	chr11	97781616	97781816	-	1	NA	NA	NA	50	NR_028078	100302498	Mm.453536	NR_028078	ENSMUSG00000064901	Snora21	MBI-3	small nucleolar RNA, H/ACA box 21	snoRNA	0.035000	0.487562	-58(CCCTTTTAAAAG,-,0.00),-57(CCTTTTAAAAGC,+,0.00),-57(CCTTTTAAAAGC,-,0.00),-56(CTTTTAAAAGCA,+,0.00)
mm_83484.1	chr9	45930365	45930565	-	1	NA	NA	NA	5593	NM_011526	21345	Mm.283283	NM_011526	ENSMUSG00000032085	Tagln	Sm22|Sm22a|Ws310	transgelin	protein-coding	0.020000	0.542289	-40(GAGCATAAGAGG,-,0.00)
mm_172009.1	chr6	109505212	109505412	-	1	NA	NA	NA	676671	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.060000	0.517413	38(AACTTTAAATGG,-,0.00)
mm_3348.1	chr1	138145318	138145518	+	1	NA	NA	NA	29708	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.005000	0.422886	
mm_154931.1	chrX	35888597	35888797	+	1	NA	NA	NA	-135	NM_001009947	75974	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	0.070000	0.691542	
mm_2103.1	chr1	87803822	87804022	+	1	NA	NA	NA	242	NM_009118	20215	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	0.020000	0.582090	
mm_88995.1	chr10	81575145	81575345	+	1	NA	NA	NA	-42	NM_019725	21886	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0.110000	0.736318	
mm_87695.1	chr10	59636841	59637041	+	1	NA	NA	NA	-20249	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.025000	0.522388	
mm_80121.1	chr9	70576625	70576825	+	1	NA	NA	NA	33855	NM_025690	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.000000	0.447761	
mm_111891.1	chr12	108275280	108275480	-	1	NA	NA	NA	37	NM_001159910	668158	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010	coiled-coil domain containing 85C	protein-coding	0.135000	0.820896	
mm_1466.1	chr1	69769286	69769486	+	1	NA	NA	NA	-57584	NM_029160	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	0.015000	0.373134	
mm_167761.1	chr9	110422610	110422810	-	1	NA	NA	NA	2902	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.010000	0.512438	
mm_132001.1	chr16	25423403	25423603	+	1	NA	NA	NA	136686	NM_175165	71338	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding	0.005000	0.278607	
mm_35478.1	chr4	40853550	40853750	-	1	NA	NA	NA	887	NM_022305	14595	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0.125000	0.731343	
mm_136179.1	chr16	88874211	88874411	-	1	NA	NA	NA	-42	NM_130870	170651	Mm.196827	NM_130870	ENSMUSG00000057650	Krtap19-2	Krtap16-1	keratin associated protein 19-2	protein-coding	0.015000	0.427861	-34(GAGTATATAAGC,-,0.00)
mm_6781.1	chr1	84137897	84138097	-	1	NA	NA	NA	80964	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.502488	
mm_110947.1	chr12	76643669	76643869	-	1	NA	NA	NA	66778	NM_013675	20741	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0.010000	0.482587	
mm_148613.1	chr19	5366855	5367055	+	1	NA	NA	NA	-79	NM_011793	23825	Mm.358649	NM_011793	ENSMUSG00000024844	Banf1	Baf|Bcrp1|L2bp1/Baf	barrier to autointegration factor 1	protein-coding	0.085000	0.611940	
mm_165050.1	chr19	40678698	40678898	+	1	NA	NA	NA	19028	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.020000	0.522388	
mm_142566.1	chr17	46674187	46674387	-	1	NA	NA	NA	-32	NM_144857	224823	Mm.45101	NM_144857	ENSMUSG00000023971	Rrp36	-	ribosomal RNA processing 36 homolog (S. cerevisiae)	protein-coding	0.070000	0.626866	
mm_24047.1	chr3	87857909	87858109	+	1	NA	NA	NA	11254	NM_021309	27371	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	0.030000	0.487562	
mm_81089.1	chr9	106329340	106329540	+	1	NA	NA	NA	-39192	NM_153459	235584	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.005000	0.547264	
mm_25856.1	chr3	129634605	129634805	+	1	NA	NA	NA	90381	NM_001310737	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.005000	0.482587	
mm_98953.1	chr11	98458202	98458402	+	1	NA	NA	NA	11468	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.060000	0.661692	
mm_92175.1	chr10	67647382	67647582	-	1	NA	NA	NA	-98527	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.010000	0.472637	
mm_27196.1	chr3	34861156	34861356	-	1	NA	NA	NA	61395	NR_105799	102466155		NR_105799	ENSMUSG00000098862	Mir6378	Gm27706|mmu-mir-6378	microRNA 6378	ncRNA	0.020000	0.482587	
mm_64649.1	chr7	4063072	4063272	-	1	NA	NA	NA	32	NM_001302677	52855	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.005000	0.532338	
mm_76945.1	chr8	105966032	105966232	-	1	NA	NA	NA	-17	NR_045594	20498	Mm.292447	NM_009195	ENSMUSG00000017765	Slc12a4	AW546649|KCC1|RBCKCC1	solute carrier family 12, member 4	protein-coding	0.125000	0.805970	
mm_35161.1	chr4	13483132	13483332	-	1	NA	NA	NA	-260070	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.035000	0.398010	
mm_32455.1	chr4	107367967	107368167	+	1	NA	NA	NA	283	NM_028355	72787	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0.110000	0.731343	
mm_10720.1	chr2	22823335	22823535	+	1	NA	NA	NA	49108	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.020000	0.502488	
mm_1029.1	chr1	58754987	58755187	+	1	NA	NA	NA	24535	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.005000	0.378109	-71(GCTTTTATGGAG,+,0.00)
mm_156385.1	chrX	139684931	139685131	+	1	NA	NA	NA	35	NM_001081499	245638	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	0.045000	0.616915	
mm_83626.1	chr9	48910833	48911033	-	1	NA	NA	NA	166	NM_013561	15561	Mm.4831	NM_013561	ENSMUSG00000032269	Htr3a	5-HT3	5-hydroxytryptamine (serotonin) receptor 3A	protein-coding	0.015000	0.597015	
mm_100346.1	chr11	118428028	118428228	+	1	NA	NA	NA	-329	NM_001204129	56745	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.030000	0.537313	
mm_138852.1	chr17	40816607	40816807	+	1	NA	NA	NA	5558	NM_011269	19743	Mm.12961	NM_011269	ENSMUSG00000023926	Rhag	CD241|Rh50|Rh50A	Rhesus blood group-associated A glycoprotein	protein-coding	0.005000	0.328358	
mm_167857.1	chrX	12156417	12156617	+	1	NA	NA	NA	3829	NR_045434	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.015000	0.532338	
mm_26070.1	chr3	136670098	136670298	+	1	NA	NA	NA	132	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.180000	0.781095	
mm_47445.1	chr5	123397874	123398074	-	1	NA	NA	NA	3176	NM_177582	208104	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.030000	0.507463	
mm_36812.1	chr4	103215074	103215274	-	1	NA	NA	NA	-290	NM_177732	242585	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.110000	0.756219	
mm_154200.1	chr19	58987964	58988164	-	1	NA	NA	NA	-44392	NM_001327998	73442	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0.010000	0.447761	12(GGCTATTTGAGG,-,0.00)
mm_154642.1	chrX	7767441	7767641	+	1	NA	NA	NA	3500	NM_001271491	209446	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	0.025000	0.611940	
mm_107765.1	chr12	59129645	59129845	+	1	NA	NA	NA	-1	NM_146034	338320	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.020000	0.442786	
mm_5690.1	chr1	43185985	43186185	-	1	NA	NA	NA	10676	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.010000	0.487562	
mm_130177.1	chr15	93387752	93387952	-	1	NA	NA	NA	10438	NM_026025	67197	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	0.025000	0.407960	
mm_28065.1	chr3	84259742	84259942	-	1	NA	NA	NA	-63	NM_001271727	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.080000	0.626866	
mm_64806.1	chr7	6706216	6706416	-	1	NA	NA	NA	-444	NR_023846	100169889	Mm.491213	NR_023846		Peg3os	Apeg3|Peg3as	Peg3 opposite strand	ncRNA	0.015000	0.482587	
mm_142512.1	chr17	46202401	46202601	-	1	NA	NA	NA	124	NM_030715	80905	Mm.311585	NM_030715	ENSMUSG00000023953	Polh	RAD30A|XPV	polymerase (DNA directed), eta (RAD 30 related)	protein-coding	0.065000	0.597015	
mm_18713.1	chr2	72398219	72398419	-	1	NA	NA	NA	-77900	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.035000	0.527363	-35(GCTCTTTAAAGC,-,0.00),-34(CTCTTTAAAGCT,+,0.00)
mm_140598.1	chr17	10319143	10319343	-	1	NA	NA	NA	118	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.205000	0.810945	
mm_19201.1	chr2	84476657	84476857	-	1	NA	NA	NA	2	NM_001177319	21788	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0.015000	0.482587	-41(GCCCCTATAAGG,-,0.00),-39(CCCTATAAGGGG,+,0.00),-39(CCCTATAAGGGG,-,0.00)
mm_139194.1	chr17	47611530	47611730	+	1	NA	NA	NA	34	NM_020048	56771	Mm.59393	NM_020048	ENSMUSG00000092558	Med20	1110011O05Rik|2410115I17Rik|AU018348|Trfp	mediator complex subunit 20	protein-coding	0.095000	0.582090	
mm_89539.1	chr10	94550854	94551054	+	1	NA	NA	NA	-24303	NM_001168684	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.035000	0.542289	
mm_147148.1	chr18	36606009	36606209	-	1	NA	NA	NA	45506	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.005000	0.482587	
mm_18572.1	chr2	65567201	65567401	-	1	NA	NA	NA	191	NM_018732	20269	Mm.330256	NM_018732	ENSMUSG00000057182	Scn3a	Gm1000|Nav1.3	sodium channel, voltage-gated, type III, alpha	protein-coding	0.010000	0.407960	
mm_45589.1	chr5	74395546	74395746	-	1	NA	NA	NA	136096	NM_178672	212986	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	0.000000	0.293532	
mm_162380.1	chr1	72284209	72284409	-	1	NA	NA	NA	5	NM_023523	111175	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding	0.065000	0.621891	
mm_64921.1	chr7	16248411	16248611	-	1	NA	NA	NA	-4357	NM_176912	319430	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	0.015000	0.512438	-56(AGGCATATAAGG,-,0.00),-54(GCATATAAGGAC,+,0.00)
mm_6865.1	chr1	84278380	84278580	-	1	NA	NA	NA	6165	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.010000	0.407960	
mm_62745.1	chr7	111083090	111083290	+	1	NA	NA	NA	-160	NM_013507	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.130000	0.716418	
mm_130002.1	chr15	86202609	86202809	-	1	NA	NA	NA	-11750	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.015000	0.592040	
mm_86258.1	chr9	121586857	121587057	-	1	NA	NA	NA	-63	NR_040740	75384	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	0.015000	0.457711	
mm_43618.1	chr5	138103637	138103837	+	1	NA	NA	NA	-13168	NM_001044703	22697	Mm.2760	NM_011757	ENSMUSG00000037017	Zscan21	AI326272|CTfin51|RU49|Zfp-38|Zfp38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding	0.005000	0.373134	-6(TTTTTTAAAGCA,+,0.00)
mm_125718.1	chr15	69040909	69041109	+	1	NA	NA	NA	112589	NM_010158	13992	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding	0.005000	0.328358	-98(GTCTTTAAATGA,-,0.00)
mm_66441.1	chr7	44848447	44848647	-	1	NA	NA	NA	532	NM_001042655	233204	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	0.075000	0.626866	
mm_74613.1	chr8	12573224	12573424	-	1	NA	NA	NA	275	NM_024279	78634	Mm.116871	NM_024279	ENSMUSG00000010435	Spaca7	1700094C09Rik	sperm acrosome associated 7	protein-coding	0.035000	0.477612	
mm_140410.1	chr17	87646207	87646407	+	1	NA	NA	NA	10328	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.045000	0.537313	
mm_64132.1	chr7	141172572	141172772	+	1	NA	NA	NA	179	NM_001172100	107702	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.090000	0.616915	
mm_18224.1	chr2	51139846	51140046	-	1	NA	NA	NA	9165	NM_028810	74194	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0.000000	0.407960	
mm_94733.1	chr11	21048064	21048264	+	1	NA	NA	NA	-43160	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.010000	0.462687	
mm_37449.1	chr4	123398922	123399122	-	1	NA	NA	NA	12889	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.010000	0.363184	
mm_3512.1	chr1	150107273	150107473	+	1	NA	NA	NA	7342	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.000000	0.283582	
mm_126623.1	chr15	83172258	83172458	+	1	NA	NA	NA	-150	NM_029787	109754	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.080000	0.651741	
mm_145671.1	chr18	61555132	61555332	+	1	NA	NA	NA	-350	NM_146087	93687	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0.100000	0.691542	
mm_63925.1	chr7	139389230	139389430	+	1	NA	NA	NA	221	NM_001127363	212111	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.140000	0.815920	
mm_101460.1	chr11	30268050	30268250	-	1	NA	NA	NA	-48378	NM_175836	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.120000	0.771144	
mm_56352.1	chr6	93678834	93679034	-	1	NA	NA	NA	234029	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.070000	0.572139	
mm_154217.1	chr19	59345448	59345648	-	1	NA	NA	NA	232	NM_001033222	107368	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0.145000	0.746269	
mm_91404.1	chr10	30842721	30842921	-	1	NA	NA	NA	-38	NM_013904	15214	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	0.100000	0.741294	
mm_165037.1	chr19	37561476	37561676	-	1	NA	NA	NA	11158	NM_175353	107371	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0.015000	0.407960	
mm_3666.1	chr1	153487700	153487900	+	1	NA	NA	NA	-140	NM_007842	13211	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.055000	0.582090	
mm_167652.1	chr9	66060083	66060283	+	1	NA	NA	NA	14	NM_011149	19035	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	0.150000	0.766169	
mm_29357.1	chr3	108536394	108536594	-	1	NA	NA	NA	28	NM_001033304	229722	Mm.316890	NM_001033304	ENSMUSG00000040412	5330417C22Rik	BB183350	RIKEN cDNA 5330417C22 gene	protein-coding	0.030000	0.552239	
mm_154689.1	chrX	7966253	7966453	+	1	NA	NA	NA	1557	NM_008089	14460	Mm.335973	NM_008089	ENSMUSG00000031162	Gata1	Gata-1|Gf-1|eryf1	GATA binding protein 1	protein-coding	0.010000	0.597015	
mm_171621.1	chr4	153153031	153153231	+	1	NA	NA	NA	329699	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	0.000000	0.507463	
mm_113603.1	chr13	41236241	41236441	+	1	NA	NA	NA	-13503	NM_001135577	108934	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.015000	0.562189	
mm_153056.1	chr19	32151190	32151390	-	1	NA	NA	NA	-48150	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.005000	0.447761	
mm_158511.1	chrX	142966654	142966854	-	1	NA	NA	NA	-26	NM_019496	56068	Mm.143724	NM_019496	ENSMUSG00000042225	Ammecr1	6230420G18Rik	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	protein-coding	0.140000	0.751244	
mm_79572.1	chr9	58134232	58134432	+	1	NA	NA	NA	257	NM_001162476	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.015000	0.567164	
mm_88291.1	chr10	75223452	75223652	+	1	NA	NA	NA	11162	NM_001145826	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.025000	0.388060	62(TCTTTTAAAAAC,+,0.00)
mm_164844.1	chr18	43687578	43687778	-	1	NA	NA	NA	95	NM_001163637	76217	Mm.134602	NM_001163637	ENSMUSG00000024502	Jakmip2	6430702L21Rik|AI850334|D930046L20Rik	janus kinase and microtubule interacting protein 2	protein-coding	0.015000	0.592040	
mm_57251.1	chr6	123283420	123283620	-	1	NA	NA	NA	6351	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.388060	
mm_82312.1	chr9	7872855	7873055	-	1	NA	NA	NA	215	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.045000	0.646766	
mm_53588.1	chr6	137745475	137745675	+	1	NA	NA	NA	-9002	NM_172733	232449	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0.020000	0.412935	
mm_164591.1	chr17	26535303	26535503	-	1	NA	NA	NA	-26109	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.010000	0.537313	
mm_4031.1	chr1	165770580	165770780	+	1	NA	NA	NA	6900	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.020000	0.437811	
mm_97803.1	chr11	82956800	82957000	+	1	NA	NA	NA	3781	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.020000	0.462687	
mm_130321.1	chr15	97469620	97469820	-	1	NA	NA	NA	-222433	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.015000	0.497512	
mm_98059.1	chr11	85831146	85831346	+	1	NA	NA	NA	1142	NR_077059	69909	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.045000	0.572139	-15(GCTTTTAAACGC,+,0.00)
mm_53112.1	chr6	125096037	125096237	+	1	NA	NA	NA	-26	NM_145979	107932	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	0.090000	0.681592	6(GGCCCTTTAAGA,-,0.00),7(GCCCTTTAAGAG,-,0.00),8(CCCTTTAAGAGG,-,0.00),9(CCTTTAAGAGGC,+,0.00)
mm_87096.1	chr10	33083154	33083354	+	1	NA	NA	NA	-229	NM_029726	76757	Mm.338508	NM_029726	ENSMUSG00000019787	Trdn	2310045H21Rik|EG432451|TDN	triadin	protein-coding	0.005000	0.338308	
mm_150874.1	chr19	45055619	45055819	+	1	NA	NA	NA	8143	NM_001178013	94280	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.010000	0.462687	
mm_37942.1	chr4	133095239	133095439	-	1	NA	NA	NA	-35294	NM_153423	242687	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.020000	0.651741	
mm_78892.1	chr9	44606845	44607045	+	1	NA	NA	NA	2053	NM_181324	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.005000	0.323383	7(GGTTTTTTAAGG,-,0.00)
mm_19425.1	chr2	91931684	91931884	-	1	NA	NA	NA	75	NM_001012336	17242	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.075000	0.706468	
mm_167978.1	chrX	159508754	159508954	-	1	NA	NA	NA	-23814	NM_001033472	382252	Mm.296254	NM_001033472	ENSMUSG00000044150	A830080D01Rik	2310067E24Rik|Gm1146	RIKEN cDNA A830080D01 gene	protein-coding	0.025000	0.542289	
mm_9347.1	chr1	172066676	172066876	-	1	NA	NA	NA	-9180	NM_010916	18071	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	0.050000	0.547264	
mm_56862.1	chr6	118197701	118197901	-	1	NA	NA	NA	-57	NM_001080780	19713	Mm.57199	NM_009050	ENSMUSG00000030110	Ret	PTC|RET51|RET9|c-Ret	ret proto-oncogene	protein-coding	0.040000	0.572139	
mm_84867.1	chr9	78630288	78630488	-	1	NA	NA	NA	14842	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.015000	0.447761	
mm_40582.1	chr5	64156424	64156624	+	1	NA	NA	NA	-3736	NM_019636	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.025000	0.452736	
mm_37620.1	chr4	127141397	127141597	-	1	NA	NA	NA	15454	NM_001099319	100039968	Mm.392655	NM_001099319	ENSMUSG00000070737	Tmem35b	Gm12942|OTTMUSG00000009332|Zmym6nb	transmembrane protein 35B	protein-coding	0.045000	0.577114	
mm_131891.1	chr16	23227754	23227954	+	1	NA	NA	NA	1833	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.015000	0.442786	
mm_135323.1	chr16	38783763	38783963	-	1	NA	NA	NA	16340	NM_178924	22268	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0.015000	0.447761	26(GCTTTAATGCTG,+,0.00)
mm_152492.1	chr19	11055724	11055924	-	1	NA	NA	NA	-5258	NR_102366	107350	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.005000	0.378109	
mm_146998.1	chr18	34371951	34372151	-	1	NA	NA	NA	1364	NM_007874	13476	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0.020000	0.432836	
mm_70257.1	chr8	3515310	3515510	+	1	NA	NA	NA	26	NM_015801	50767	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0.070000	0.606965	
mm_35121.1	chr4	11007545	11007745	-	1	NA	NA	NA	-26	NM_175175	71801	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.135000	0.756219	
mm_20081.1	chr2	120609412	120609612	-	1	NA	NA	NA	-4	NM_001159609	66606	Mm.428639	NM_025657	ENSMUSG00000027286	Lrrc57	2810002D13Rik|AA407405	leucine rich repeat containing 57	protein-coding	0.070000	0.626866	
mm_20999.1	chr2	152332559	152332759	-	1	NA	NA	NA	-20	NM_019705	24105	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0.050000	0.656716	
mm_57210.1	chr6	122855754	122855954	-	1	NA	NA	NA	303	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.005000	0.383085	
mm_125007.1	chr15	25364756	25364956	+	1	NA	NA	NA	48908	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.070000	0.616915	
mm_115136.1	chr13	104622610	104622810	+	1	NA	NA	NA	194243	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.005000	0.437811	
mm_14536.1	chr2	132781609	132781809	+	1	NA	NA	NA	431	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.085000	0.706468	
mm_28501.1	chr3	92484605	92484805	-	1	NA	NA	NA	1176	NM_009264	20753	Mm.331191	NM_009264	ENSMUSG00000050359	Sprr1a	AI528815|SPR1a|mSPRR1A	small proline-rich protein 1A	protein-coding	0.000000	0.477612	-95(TTCTCTAAAGGG,-,0.00)
mm_46150.1	chr5	93306343	93306543	-	1	NA	NA	NA	38870	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0.010000	0.502488	
mm_136259.1	chr16	91010999	91011199	-	1	NA	NA	NA	-4	NM_001045515	104015	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.110000	0.746269	
mm_93062.1	chr10	88826614	88826814	-	1	NA	NA	NA	100	NM_175158	70683	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	0.090000	0.621891	
mm_26229.1	chr3	139205550	139205750	+	1	NA	NA	NA	-243	NM_198659	381476	Mm.188334	NM_198659	ENSMUSG00000047940	Stpg2	B930007M17Rik|Gm1017	sperm tail PG rich repeat containing 2	protein-coding	0.090000	0.686567	
mm_102588.1	chr11	61878561	61878761	-	1	NA	NA	NA	-23569	NM_013881	29869	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.005000	0.348259	56(GGGTTTAAGAGG,-,0.00)
mm_59040.1	chr7	19344449	19344649	+	1	NA	NA	NA	-522	NM_001127324	13870	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.030000	0.597015	
mm_149592.1	chr19	16145993	16146193	+	1	NA	NA	NA	13262	NM_008139	14682	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.000000	0.298507	
mm_49551.1	chr6	30512228	30512428	+	1	NA	NA	NA	42	NM_029373	75647	Mm.46117	NM_027073	ENSMUSG00000029784	Ssmem1	1700016K02Rik|1700025E21Rik	serine-rich single-pass membrane protein 1	protein-coding	0.020000	0.472637	
mm_16403.1	chr2	180024879	180025079	+	1	NA	NA	NA	-8	NM_177727	241846	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	0.130000	0.741294	
mm_148673.1	chr19	5637678	5637878	+	1	NA	NA	NA	288	NM_009045	19697	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.145000	0.741294	
mm_108655.1	chr12	86361364	86361564	+	1	NA	NA	NA	347	NM_001159500	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.030000	0.532338	
mm_147423.1	chr18	46212480	46212680	-	1	NA	NA	NA	27	NM_178872	28105	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.060000	0.661692	
mm_107758.1	chr12	59071462	59071662	+	1	NA	NA	NA	4643	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.015000	0.462687	
mm_80732.1	chr9	94668774	94668974	+	1	NA	NA	NA	-1018	NM_177909	331004	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.015000	0.507463	
mm_118031.1	chr13	101659038	101659238	-	1	NA	NA	NA	33492	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.005000	0.507463	
mm_107548.1	chr12	40794191	40794391	+	1	NA	NA	NA	-229799	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.025000	0.442786	
mm_65043.1	chr7	18567285	18567485	-	1	NA	NA	NA	-80	NM_001037168	545925	Mm.440302	NM_001037168	ENSMUSG00000070797	Psg27	EG545925|cea15	pregnancy-specific glycoprotein 27	protein-coding	0.010000	0.452736	
mm_164953.1	chr19	5447627	5447827	+	1	NA	NA	NA	29	NM_010235	14283	Mm.6215	NM_010235	ENSMUSG00000024912	Fosl1	AW538199|Fra1|fra-1	fos-like antigen 1	protein-coding	0.090000	0.671642	
mm_69367.1	chr7	130573034	130573234	-	1	NA	NA	NA	-4350	NM_001004468	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.040000	0.592040	
mm_29058.1	chr3	103778067	103778267	-	1	NA	NA	NA	13108	NM_001301306	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.020000	0.517413	
mm_140867.1	chr17	23771522	23771722	-	1	NA	NA	NA	-31	NM_153791	224613	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	0.115000	0.686567	
mm_46410.1	chr5	104093188	104093388	-	1	NA	NA	NA	-15680	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.010000	0.437811	
mm_16948.1	chr2	16712039	16712239	-	1	NA	NA	NA	301587	NR_040632	75069	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	0.010000	0.502488	
mm_46421.1	chr5	104113614	104113814	-	1	NA	NA	NA	374	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding	0.015000	0.557214	
mm_7913.1	chr1	133690008	133690208	-	1	NA	NA	NA	0	NM_001159649	240754	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	0.025000	0.557214	
mm_79778.1	chr9	62851331	62851531	+	1	NA	NA	NA	-6673	NM_001102468	75600	Mm.440576	NM_138304	ENSMUSG00000032246	Calml4	2010002G05Rik	calmodulin-like 4	protein-coding	0.015000	0.562189	60(CCATTTATATGC,+,0.00)
mm_38191.1	chr4	135353042	135353242	-	1	NA	NA	NA	72	NM_016799	51796	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.155000	0.721393	
mm_4004.1	chr1	164796629	164796829	+	1	NA	NA	NA	-3	NM_019759	56429	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	0.015000	0.547264	
mm_166610.1	chr6	69869123	69869323	-	1	NA	NA	NA	-542049	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.393035	-97(TCTTATAAAGTC,+,0.00)
mm_8642.1	chr1	156429934	156430134	-	1	NA	NA	NA	-9119	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.010000	0.383085	
mm_28433.1	chr3	90465739	90465939	-	1	NA	NA	NA	27	NM_008727	18160	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.110000	0.716418	
mm_157259.1	chrX	19154116	19154316	-	1	NA	NA	NA	-7245	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.010000	0.393035	
mm_115900.1	chr13	23313307	23313507	-	1	NA	NA	NA	0	NR_126443	75322	Mm.108666	NR_126443	ENSMUSG00000085488	4930557F10Rik	-	RIKEN cDNA 4930557F10 gene	ncRNA	0.065000	0.537313	
mm_150677.1	chr19	42052652	42052852	+	1	NA	NA	NA	524	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	0.045000	0.562189	
mm_50653.1	chr6	51470326	51470526	+	1	NA	NA	NA	-190	NM_007624	12417	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	0.070000	0.671642	
mm_163468.1	chr12	102423633	102423833	-	1	NA	NA	NA	16080	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.040000	0.562189	
mm_102137.1	chr11	53480068	53480268	-	1	NA	NA	NA	27	NM_183173	237761	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	0.045000	0.626866	
mm_45144.1	chr5	49159274	49159474	-	1	NA	NA	NA	126285	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.005000	0.288557	
mm_121540.1	chr14	122464857	122465057	+	1	NA	NA	NA	701	NM_022987	65100	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	0.085000	0.776119	
mm_62561.1	chr7	103826559	103826759	+	1	NA	NA	NA	1269	NM_001201391	100503605	Mm.288567	NM_001201391	ENSMUSG00000052305	Hbb-bs	Beta-s|Hbbt1|Hbbt2	hemoglobin, beta adult s chain	protein-coding	0.010000	0.512438	
mm_139544.1	chr17	56764628	56764828	+	1	NA	NA	NA	-23	NM_144858	224907	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	0.085000	0.641791	
mm_59782.1	chr7	28866140	28866340	+	1	NA	NA	NA	1854	NM_008496	16858	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	0.035000	0.522388	
mm_46627.1	chr5	108447005	108447205	-	1	NA	NA	NA	1786	NM_172883	243197	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7	major facilitator superfamily domain containing 7A	protein-coding	0.005000	0.507463	
mm_62236.1	chr7	98656088	98656288	+	1	NA	NA	NA	381	NM_172280	233545	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0.130000	0.706468	
mm_100225.1	chr11	117115126	117115326	+	1	NA	NA	NA	54	NM_001166506	74136	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.155000	0.776119	
mm_76957.1	chr8	106052475	106052675	-	1	NA	NA	NA	-7028	NM_010901	18021	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.010000	0.497512	
mm_72508.1	chr8	83900003	83900203	+	1	NA	NA	NA	5	NM_181039	330814	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0.125000	0.761194	
mm_60271.1	chr7	43842185	43842385	+	1	NA	NA	NA	16	NM_026806	68668	Mm.458122	NM_026806	ENSMUSG00000074155	Klk5	1110030O19Rik	kallikrein related-peptidase 5	protein-coding	0.025000	0.562189	
mm_2631.1	chr1	121431040	121431240	+	1	NA	NA	NA	73	NM_001025156	70829	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	0.065000	0.621891	
mm_112392.1	chr12	119238495	119238695	-	1	NA	NA	NA	-319	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.040000	0.611940	
mm_75961.1	chr8	71721717	71721917	-	1	NA	NA	NA	3864	NR_131256	74015	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.005000	0.552239	
mm_62435.1	chr7	101362967	101363167	+	1	NA	NA	NA	14998	NM_001040111	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.015000	0.641791	
mm_54733.1	chr6	40929638	40929838	-	1	NA	NA	NA	10819	NM_028550	73481	Mm.333010	NM_028550	ENSMUSG00000029883	1700074P13Rik	AV047902|Tryx5	RIKEN cDNA 1700074P13 gene	protein-coding	0.005000	0.472637	
mm_150555.1	chr19	39329069	39329269	+	1	NA	NA	NA	42084	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.000000	0.402985	
mm_154118.1	chr19	57182236	57182436	-	1	NA	NA	NA	15295	NM_001103177	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.020000	0.532338	
mm_63939.1	chr7	139833997	139834197	+	1	NA	NA	NA	-77	NM_177469	52389	Mm.39863	NM_177469	ENSMUSG00000025475	Adgra1	2900059M17Rik|D7Ertd680e|Gpr123	adhesion G protein-coupled receptor A1	protein-coding	0.085000	0.651741	
mm_1334.1	chr1	65926421	65926621	+	1	NA	NA	NA	-1	NM_027010	12969	Mm.275362	NM_027010	ENSMUSG00000025945	Crygf	3110001K11Rik|Cryg-2|DGcry-2|Len-2	crystallin, gamma F	protein-coding	0.005000	0.587065	
mm_17099.1	chr2	23496298	23496498	-	1	NA	NA	NA	75706	NM_029773	76857	Mm.276415	NM_029773	ENSMUSG00000026771	Spopl	4921517N04Rik|AU014935|BB233739|E430033K04Rik	speckle-type POZ protein-like	protein-coding	0.000000	0.268657	
mm_111755.1	chr12	103956481	103956681	-	1	NA	NA	NA	316	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	0.010000	0.542289	
mm_503.1	chr1	37100513	37100713	+	1	NA	NA	NA	-117665	NM_001282010	12790	Mm.214224	NM_009918	ENSMUSG00000026114	Cnga3	CNG3	cyclic nucleotide gated channel alpha 3	protein-coding	0.010000	0.507463	
mm_92986.1	chr10	86701673	86701873	-	1	NA	NA	NA	3671	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.020000	0.412935	
mm_170961.1	chr2	57020237	57020437	+	1	NA	NA	NA	94701	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.000000	0.373134	
mm_85138.1	chr9	95795784	95795984	-	1	NA	NA	NA	-45526	NM_011643	22063	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0.015000	0.407960	
mm_130258.1	chr15	96642546	96642746	-	1	NA	NA	NA	267	NM_001166458	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.115000	0.686567	
mm_130031.1	chr15	88954465	88954665	-	1	NA	NA	NA	-147	NM_172818	239591	Mm.86807	NM_172818	ENSMUSG00000022388	Ttll8	1700019P01Rik|4933401B17	tubulin tyrosine ligase-like family, member 8	protein-coding	0.100000	0.716418	
mm_90268.1	chr10	122678947	122679147	+	1	NA	NA	NA	-268	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.155000	0.791045	
mm_65138.1	chr7	19562325	19562525	-	1	NA	NA	NA	-27	NM_199149	232947	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	0.095000	0.592040	
mm_24689.1	chr3	94974879	94975079	+	1	NA	NA	NA	248	NM_001293716	107650	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase, catalytic, beta polypeptide	protein-coding	0.125000	0.756219	
mm_37694.1	chr4	129261300	129261500	-	1	NA	NA	NA	4	NM_001285867	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.010000	0.527363	-32(CCTTTTCAGGGA,+,0.00)
mm_166431.1	chr5	137166073	137166273	-	1	NA	NA	NA	-49966	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.030000	0.552239	
mm_49520.1	chr6	29894693	29894893	+	1	NA	NA	NA	-22220	NM_001037740	320609	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0.025000	0.487562	
mm_142383.1	chr17	44737941	44738141	-	1	NA	NA	NA	-1393	NM_001145920	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.020000	0.562189	
mm_12443.1	chr2	71055674	71055874	+	1	NA	NA	NA	30	NM_001165980	75763	Mm.281668	NM_198005	ENSMUSG00000041966	Dcaf17	2810055O12Rik|4833418A01Rik|A030004A10Rik|A930009G19Rik|AI448937	DDB1 and CUL4 associated factor 17	protein-coding	0.065000	0.557214	
mm_127866.1	chr15	8386980	8387180	-	1	NA	NA	NA	57383	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.010000	0.358209	
mm_121386.1	chr14	118953395	118953595	+	1	NA	NA	NA	15563	NM_008929	100037258	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.015000	0.522388	
mm_167155.1	chr7	131334479	131334679	+	1	NA	NA	NA	-43	NM_183272	68223	Mm.233827	NM_183272	ENSMUSG00000030859	Fam24a	1700063I17Rik	family with sequence similarity 24, member A	protein-coding	0.005000	0.507463	
mm_68463.1	chr7	110372575	110372775	-	1	NA	NA	NA	150972	NM_009302	20947	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.010000	0.412935	
mm_56607.1	chr6	112475657	112475857	-	1	NA	NA	NA	14051	NM_001081147	18430	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding	0.000000	0.522388	
mm_157184.1	chrX	10216625	10216825	-	1	NA	NA	NA	70	NM_001177954	19893	Mm.247556	NM_011285	ENSMUSG00000031174	Rpgr	Rp3h	retinitis pigmentosa GTPase regulator	protein-coding	0.070000	0.641791	
mm_34001.1	chr4	137920672	137920872	+	1	NA	NA	NA	58535	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.020000	0.497512	
mm_29934.1	chr3	131613633	131613833	-	1	NA	NA	NA	47701	NM_001289477	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.005000	0.487562	
mm_97085.1	chr11	73126666	73126866	+	1	NA	NA	NA	11528	NM_010353	14841	Mm.42045	NM_010353	ENSMUSG00000050107	Gsg2	Haspin	germ cell associated 2, haspin	protein-coding	0.020000	0.522388	
mm_74968.1	chr8	27042893	27043093	-	1	NA	NA	NA	438	NM_054057	114863	Mm.277501	NM_054057	ENSMUSG00000031485	Prosc	1700024N20Rik|2200002F22Rik	proline synthetase co-transcribed	protein-coding	0.110000	0.626866	
mm_28608.1	chr3	94680766	94680966	-	1	NA	NA	NA	-12707	NM_019414	20342	Mm.225405	NM_019414	ENSMUSG00000068877	Selenbp2	AP56|Lpsb2	selenium binding protein 2	protein-coding	0.040000	0.497512	
mm_110038.1	chr12	17011437	17011637	-	1	NA	NA	NA	190	NM_001201332	73667	Mm.159048	NM_001201332	ENSMUSG00000071398	2410004P03Rik	-	RIKEN cDNA 2410004P03 gene	protein-coding	0.060000	0.616915	
mm_49419.1	chr6	29060120	29060320	+	1	NA	NA	NA	-1	NM_008493	16846	Mm.277072	NM_008493	ENSMUSG00000059201	Lep	ob|obese	leptin	protein-coding	0.045000	0.631841	
mm_41521.1	chr5	92504935	92505135	+	1	NA	NA	NA	622	NM_007644	12492	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.040000	0.517413	-34(TTATTTAAAAGG,-,0.00)
mm_111473.1	chr12	98578014	98578214	-	1	NA	NA	NA	99	NM_029911	72258	Mm.196158	NM_029911	ENSMUSG00000033854	Kcnk10	1700024D23Rik|3010005K24Rik|Trek2	potassium channel, subfamily K, member 10	protein-coding	0.045000	0.587065	
mm_20574.1	chr2	131085672	131085872	-	1	NA	NA	NA	993	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.015000	0.562189	
mm_20187.1	chr2	122606809	122607009	-	1	NA	NA	NA	4368	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.005000	0.452736	
mm_31926.1	chr4	85514188	85514388	+	1	NA	NA	NA	308832	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.090000	0.731343	
mm_383.1	chr1	34065665	34065865	+	1	NA	NA	NA	-51594	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.005000	0.412935	
mm_155527.1	chrX	74281809	74282009	+	1	NA	NA	NA	-173	NM_027109	69537	Mm.20169	NM_027109	ENSMUSG00000019088	Dnase1l1	2310005K03Rik|AI324885|Dnase1ll|Dnasex|Dnl1ll|G4.8	deoxyribonuclease 1-like 1	protein-coding	0.050000	0.567164	
mm_16184.1	chr2	172977456	172977656	+	1	NA	NA	NA	-2286	NM_012046	26972	Mm.23495	NM_012046	ENSMUSG00000005883	Spo11	AI449549|Spo11a|Spo11b	SPO11 meiotic protein covalently bound to DSB	protein-coding	0.035000	0.616915	
mm_56158.1	chr6	87850980	87851180	-	1	NA	NA	NA	26	NM_001109746	12785	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	0.115000	0.706468	
mm_4937.1	chr1	191171529	191171729	+	1	NA	NA	NA	-6812	NM_001109759	619288	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	0.030000	0.532338	
mm_168033.1	chrY	90739295	90739495	-	1	NA	NA	NA	15655	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.030000	0.507463	-33(CTTTTTAAACTC,+,0.00)
mm_131929.1	chr16	23609881	23610081	+	1	NA	NA	NA	62	NM_023386	67775	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.020000	0.522388	
mm_30057.1	chr3	136935678	136935878	-	1	NA	NA	NA	265712	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.000000	0.238806	
mm_117730.1	chr13	95604808	95605008	-	1	NA	NA	NA	13525	NM_010169	14062	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	0.020000	0.447761	
mm_17846.1	chr2	34372546	34372746	-	1	NA	NA	NA	-601	NM_016768	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.120000	0.756219	
mm_83820.1	chr9	53706131	53706331	-	1	NA	NA	NA	1	NM_175562	270160	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0.095000	0.711443	
mm_1783.1	chr1	78537840	78538040	+	1	NA	NA	NA	26880	NM_026713	68393	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	0.035000	0.587065	
mm_170896.1	chr2	29065986	29066186	+	1	NA	NA	NA	5823	NM_009442	22130	Mm.252195	NM_009442	ENSMUSG00000026803	Ttf1	AV245725|TTF-1|TTF-I	transcription termination factor, RNA polymerase I	protein-coding	0.010000	0.432836	
mm_111870.1	chr12	108002019	108002219	-	1	NA	NA	NA	1295	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.080000	0.661692	
mm_134125.1	chr16	10383978	10384178	-	1	NA	NA	NA	11370	NM_001099275	70426	Mm.142181	NM_001099275	ENSMUSG00000039179	Tekt5	3300001K11Rik	tektin 5	protein-coding	0.020000	0.482587	
mm_99047.1	chr11	99041165	99041365	+	1	NA	NA	NA	5	NM_010517	16010	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.095000	0.751244	
mm_123587.1	chr14	67072339	67072539	-	1	NA	NA	NA	32	NM_028032	71978	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0.130000	0.696517	
mm_9521.1	chr1	173760087	173760287	-	1	NA	NA	NA	6732	NM_008329	15951	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.020000	0.577114	
mm_131937.1	chr16	23613258	23613458	+	1	NA	NA	NA	3439	NM_023386	67775	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.020000	0.452736	
mm_169676.1	chr15	66453777	66453977	-	1	NA	NA	NA	47033	NM_019457	54562	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	0.015000	0.338308	-42(GATTCTAAAAGG,-,0.00)
mm_168742.1	chr12	115335465	115335665	-	1	NA	NA	NA	360229	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.005000	0.427861	
mm_2585.1	chr1	118653653	118653853	+	1	NA	NA	NA	25808	NM_023755	81879	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.020000	0.492537	
mm_158127.1	chrX	102644095	102644295	-	1	NA	NA	NA	51	NM_008832	18679	Mm.212889	NM_008832	ENSMUSG00000034055	Phka1	5330411D17|9830108K24Rik|Phka	phosphorylase kinase alpha 1	protein-coding	0.120000	0.741294	
mm_76351.1	chr8	84746221	84746421	-	1	NA	NA	NA	28048	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.005000	0.552239	
mm_149748.1	chr19	22641400	22641600	+	1	NA	NA	NA	-51119	NM_001035245	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.005000	0.388060	
mm_169920.1	chr16	57391160	57391360	-	1	NA	NA	NA	37983	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.080000	0.537313	38(AACTTTAAATGG,-,0.00)
mm_146536.1	chr18	5404482	5404682	-	1	NA	NA	NA	-70143	NM_178722	240186	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.015000	0.497512	
mm_89196.1	chr10	86347719	86347919	+	1	NA	NA	NA	47407	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.005000	0.502488	
mm_70504.1	chr8	12873816	12874016	+	1	NA	NA	NA	-41977	NM_178076	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.070000	0.681592	
mm_62398.1	chr7	101108521	101108721	+	1	NA	NA	NA	-154	NM_001146010	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.165000	0.850746	
mm_4910.1	chr1	190170250	190170450	+	1	NA	NA	NA	330	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding	0.075000	0.587065	
mm_80661.1	chr9	90055196	90055396	+	1	NA	NA	NA	1029	NM_001312649	13036	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.020000	0.383085	37(TCCTTTAAAAAA,-,0.00)
mm_48627.1	chr5	145135042	145135242	-	1	NA	NA	NA	4947	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.000000	0.432836	
mm_86822.1	chr10	20959519	20959719	+	1	NA	NA	NA	7072	NM_026203	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.010000	0.388060	
mm_150507.1	chr19	39023820	39024020	+	1	NA	NA	NA	16901	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.010000	0.417910	
mm_654.1	chr1	40430950	40431150	+	1	NA	NA	NA	1480	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.010000	0.407960	
mm_29683.1	chr3	123026045	123026245	-	1	NA	NA	NA	8842	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.020000	0.427861	
mm_135625.1	chr16	52278241	52278441	-	1	NA	NA	NA	174740	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.273632	-100(GCTTTTATATTC,+,0.00)
mm_110691.1	chr12	69184329	69184529	-	1	NA	NA	NA	271	NM_146035	217664	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	0.140000	0.736318	
mm_146820.1	chr18	21148820	21149020	-	1	NA	NA	NA	76576	NM_008586	17288	Mm.2682	NM_008586	ENSMUSG00000024313	Mep1b	Mep-1b	meprin 1 beta	protein-coding	0.045000	0.482587	
mm_1378.1	chr1	66700787	66700987	+	1	NA	NA	NA	56	NM_001310644	66646	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0.095000	0.696517	
mm_74065.1	chr8	122424679	122424879	+	1	NA	NA	NA	2694	NM_145834	234836	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.010000	0.532338	-29(CCTCATATGGAG,+,0.00)
mm_43176.1	chr5	127632155	127632355	+	1	NA	NA	NA	-7	NM_177005	319804	Mm.237888	NM_177005	ENSMUSG00000049971	Glt1d1	5730455A04Rik	glycosyltransferase 1 domain containing 1	protein-coding	0.070000	0.681592	
mm_143318.1	chr17	66206594	66206794	-	1	NA	NA	NA	83174	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.005000	0.482587	
mm_102359.1	chr11	58323226	58323426	-	1	NA	NA	NA	39	NM_001256517	319475	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	0.095000	0.716418	
mm_155416.1	chrX	73490725	73490925	+	1	NA	NA	NA	7224	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.000000	0.522388	
mm_129088.1	chr15	75909225	75909425	-	1	NA	NA	NA	19	NM_001285433	66656	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0.090000	0.661692	
mm_98004.1	chr11	84179534	84179734	+	1	NA	NA	NA	-12158	NM_001037932	628813	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690|OTTMUSG00000000997	predicted gene 11437	protein-coding	0.160000	0.781095	
mm_114968.1	chr13	97190456	97190656	+	1	NA	NA	NA	7801	NM_010422	15212	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.030000	0.457711	
mm_105544.1	chr11	106324848	106325048	-	1	NA	NA	NA	-10386	NM_001313939	15985	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	0.000000	0.512438	
mm_117824.1	chr13	98016173	98016373	-	1	NA	NA	NA	189892	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0.030000	0.532338	
mm_30451.1	chr3	153852384	153852584	-	1	NA	NA	NA	-60	NR_040373	72317	Mm.440147	NR_040373	ENSMUSG00000086438	Asb17os	2510003D18Rik	ankyrin repeat and SOCS box-containing 17, opposite strand	ncRNA	0.025000	0.507463	-35(GTGCTTAAAAGG,-,0.00),-33(GCTTAAAAGGGT,+,0.00)
mm_76094.1	chr8	79712645	79712845	-	1	NA	NA	NA	925	NM_026904	68999	Mm.257445	NM_026904	ENSMUSG00000036977	Anapc10	1500026N15Rik|A830003M23Rik|APC10	anaphase promoting complex subunit 10	protein-coding	0.020000	0.567164	-34(CCCTATATAAAC,-,0.00)
mm_97756.1	chr11	80509698	80509898	+	1	NA	NA	NA	-692	NR_126552	77417	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	0.025000	0.427861	
mm_28374.1	chr3	89959024	89959224	-	1	NA	NA	NA	4208	NM_001081182	54667	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	0.035000	0.547264	
mm_76477.1	chr8	85536816	85537016	-	1	NA	NA	NA	18355	NM_019794	56445	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0.015000	0.407960	
mm_10255.1	chr2	9352374	9352574	+	1	NA	NA	NA	162959	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.020000	0.442786	-77(GACTATAAAAGC,-,0.00)
mm_100049.1	chr11	115163318	115163518	+	1	NA	NA	NA	77	NM_012030	26941	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0.120000	0.706468	
mm_55123.1	chr6	50505637	50505837	-	1	NA	NA	NA	-49383	NM_001347213	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.010000	0.522388	
mm_87495.1	chr10	51495988	51496188	+	1	NA	NA	NA	5190	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.005000	0.487562	
mm_13133.1	chr2	91880441	91880641	+	1	NA	NA	NA	-41648	NM_007699	12672	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0.000000	0.393035	55(CCTTTTCTAGAA,+,0.00)
mm_119501.1	chr14	47380191	47380391	+	1	NA	NA	NA	6431	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.005000	0.666667	
mm_116968.1	chr13	56178519	56178719	-	1	NA	NA	NA	266	NM_145976	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.045000	0.582090	
mm_103387.1	chr11	75416157	75416357	-	1	NA	NA	NA	6366	NM_011340	20317	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.045000	0.601990	
mm_123602.1	chr14	67933449	67933649	-	1	NA	NA	NA	23	NM_177780	68813	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0.195000	0.870647	
mm_100980.1	chr11	7209409	7209609	-	1	NA	NA	NA	4414	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding	0.015000	0.517413	
mm_12470.1	chr2	71437023	71437223	+	1	NA	NA	NA	-16215	NM_025633	66559	Mm.152796	NM_025633	ENSMUSG00000041921	Metap1d	2310066F24Rik|3110033D18Rik|AV117938|MAP 1D|Map1d|MetAP 1D|Metapl1	methionyl aminopeptidase type 1D (mitochondrial)	protein-coding	0.010000	0.378109	
mm_17936.1	chr2	35979717	35979917	-	1	NA	NA	NA	-193	NM_029774	74410	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0.120000	0.706468	
mm_152171.1	chr19	7334118	7334318	-	1	NA	NA	NA	7642	NM_001080389	13728	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.005000	0.532338	
mm_61724.1	chr7	81858947	81859147	+	1	NA	NA	NA	46	NM_145375	107769	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.055000	0.681592	
mm_27941.1	chr3	79628603	79628803	-	1	NA	NA	NA	64	NM_025794	66841	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	0.085000	0.646766	
mm_30958.1	chr4	33923751	33923951	+	1	NA	NA	NA	-781	NM_007726	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding	0.090000	0.606965	
mm_158975.1	chr1	118388998	118389198	+	1	NA	NA	NA	40	NM_001293301	76707	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	0.030000	0.442786	50(CTCCTTTAAAGG,-,0.00),51(TCCTTTAAAGGC,+,0.00),51(TCCTTTAAAGGC,-,0.00),52(CCTTTAAAGGCT,+,0.00)
mm_18530.1	chr2	63184442	63184642	-	1	NA	NA	NA	-255	NM_133207	170738	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.025000	0.572139	
mm_115530.1	chr13	6108973	6109173	-	1	NA	NA	NA	247584	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.020000	0.492537	58(CCCTTTAGAGAA,+,0.00)
mm_6341.1	chr1	71637185	71637385	-	1	NA	NA	NA	15949	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.025000	0.522388	
mm_165991.1	chr4	109665189	109665389	-	1	NA	NA	NA	83	NM_007671	12580	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	protein-coding	0.025000	0.497512	
mm_132026.1	chr16	27388657	27388857	+	1	NA	NA	NA	-199	NM_001025615	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.030000	0.542289	
mm_63334.1	chr7	126950593	126950793	+	1	NA	NA	NA	158	NM_001252566	233878	Mm.283926	NM_144926	ENSMUSG00000030683	Sez6l2	AI835913|AW121566|BSRP-A|Psk1	seizure related 6 homolog like 2	protein-coding	0.050000	0.621891	-58(CCTCATAAGGGC,+,0.00)
mm_79293.1	chr9	51273708	51273908	+	1	NA	NA	NA	4746	NM_001195681	100502940	Mm.235705	NM_001195681	ENSMUSG00000079559	Gm684	-	predicted gene 684	protein-coding	0.005000	0.477612	
mm_168332.1	chr11	118304236	118304436	+	1	NA	NA	NA	-14092	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.010000	0.512438	-31(CCTTTTATAAGT,+,0.00)
mm_16468.1	chr2	180710109	180710309	+	1	NA	NA	NA	-17	NM_001289652	76425	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	0.145000	0.716418	
mm_102689.1	chr11	65648311	65648511	-	1	NA	NA	NA	86421	NR_030417	791070		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	0.020000	0.502488	
mm_11.1	chr1	4845499	4845699	+	1	NA	NA	NA	-12095	NM_001159750	21399	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.005000	0.313433	
mm_50810.1	chr6	54326770	54326970	+	1	NA	NA	NA	-142	NM_030024	78004	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	0.050000	0.646766	
mm_50680.1	chr6	51569871	51570071	+	1	NA	NA	NA	25448	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.020000	0.507463	
mm_17136.1	chr2	24975735	24975935	-	1	NA	NA	NA	-198	NM_146251	241274	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0.025000	0.552239	
mm_112447.1	chr13	5861532	5861732	+	1	NA	NA	NA	143	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.095000	0.601990	
mm_38134.1	chr4	134703699	134703899	-	1	NA	NA	NA	491	NM_207237	230815	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.135000	0.756219	
mm_7583.1	chr1	125414630	125414830	-	1	NA	NA	NA	20997	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.000000	0.383085	4(GAGTTTAAAGGG,-,0.00)
mm_37725.1	chr4	129558655	129558855	-	1	NA	NA	NA	-383	NM_010693	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.020000	0.557214	
mm_118657.1	chr14	21797700	21797900	+	1	NA	NA	NA	-33761	NM_011695	22334	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0.000000	0.378109	
mm_153807.1	chr19	46045134	46045334	-	1	NA	NA	NA	-23	NM_001113408	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.140000	0.696517	
mm_127722.1	chr15	103135738	103135938	+	1	NA	NA	NA	10990	NR_045743	432989	Mm.383979	NR_045743	ENSMUSG00000097003	D930007P13Rik	-	Riken cDNA D930007P13 gene	ncRNA	0.040000	0.522388	
mm_26756.1	chr3	8665691	8665891	-	1	NA	NA	NA	1247	NM_010423	15213	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.020000	0.552239	
mm_130755.1	chr15	101270445	101270645	-	1	NA	NA	NA	3699	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.030000	0.592040	
mm_88496.1	chr10	77837469	77837669	+	1	NA	NA	NA	1622	NM_001024709	544710	Mm.441890	NM_001024709		Krtap10-10	EG544710	keratin associated protein 10-10	protein-coding	0.030000	0.567164	
mm_154949.1	chrX	36350860	36351060	+	1	NA	NA	NA	22551	NM_028894	74365	Mm.327654	NM_028894	ENSMUSG00000016239	Lonrf3	4932412G04Rik|5730439E01Rik|A830039N02Rik|AU023707|Rnf127	LON peptidase N-terminal domain and ring finger 3	protein-coding	0.000000	0.383085	
mm_148894.1	chr19	6907885	6908085	+	1	NA	NA	NA	1660	NM_012021	54683	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.015000	0.487562	
mm_70679.1	chr8	14992901	14993101	+	1	NA	NA	NA	-18024	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.030000	0.621891	
mm_137518.1	chr17	27122176	27122376	+	1	NA	NA	NA	11615	NM_026063	67267	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	0.010000	0.522388	
mm_139945.1	chr17	71198551	71198751	+	1	NA	NA	NA	-6003	NM_001164885	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.000000	0.278607	-97(CCTTTTCTAGGT,+,0.00),44(GTTTTTATAGCT,+,0.00)
mm_21882.1	chr2	166155019	166155219	-	1	NA	NA	NA	166	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.160000	0.771144	
mm_103260.1	chr11	71019180	71019380	-	1	NA	NA	NA	23	NM_001291147	116891	Mm.28131	NM_033562	ENSMUSG00000018442	Derl2	CGI-101|Derlin-2|F-lana|Flana	Der1-like domain family, member 2	protein-coding	0.085000	0.686567	
mm_107719.1	chr12	56289070	56289270	+	1	NA	NA	NA	35927	NR_045048	100503961	Mm.136732	NR_045048		Gm19990	-	predicted gene, 19990	ncRNA	0.000000	0.412935	-35(AACCTTAAAAGA,-,0.00)
mm_62878.1	chr7	114753687	114753887	+	1	NA	NA	NA	8021	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	0.000000	0.457711	
mm_54601.1	chr6	38306659	38306859	-	1	NA	NA	NA	-7500	NM_172467	209032	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	0.030000	0.373134	
mm_43800.1	chr5	142821701	142821901	+	1	NA	NA	NA	-4414	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.050000	0.641791	
mm_170047.1	chr17	25273287	25273487	-	1	NA	NA	NA	44	NM_001177610	22196	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|F830028O17Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	0.150000	0.781095	
mm_167221.1	chr8	11758156	11758356	-	1	NA	NA	NA	-74	NM_017402	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.120000	0.746269	
mm_172235.1	chr6	68120944	68121144	+	1	NA	NA	NA	-555345	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.000000	0.497512	
mm_22027.1	chr2	168050258	168050458	-	1	NA	NA	NA	-30646	NM_021409	58220	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0.105000	0.706468	
mm_162103.1	chrX	38085044	38085244	-	1	NA	NA	NA	-5	NM_198598	194738	Mm.233621	NM_198598	ENSMUSG00000051038	Rhox11	BC049711|Gm39	reproductive homeobox 11	protein-coding	0.035000	0.472637	
mm_163565.1	chr13	27241724	27241924	+	1	NA	NA	NA	-606	NM_008865	18776	Mm.37203	NM_008865	ENSMUSG00000038891	Prl3b1	Csh2|Ghd8|PL|Pl-2|Pl2|mPL-II|mplII	prolactin family 3, subfamily b, member 1	protein-coding	0.005000	0.398010	
mm_155052.1	chrX	42237654	42237854	+	1	NA	NA	NA	35899	NM_001290713	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.005000	0.378109	
mm_68764.1	chr7	121707368	121707568	-	1	NA	NA	NA	-215	NM_001033173	76179	Mm.122538	NM_001033173	ENSMUSG00000063317	Usp31	6330567E21Rik|mKIAA1203	ubiquitin specific peptidase 31	protein-coding	0.115000	0.681592	
mm_12136.1	chr2	61711645	61711845	+	1	NA	NA	NA	51	NM_021526	59029	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0.075000	0.651741	
mm_59531.1	chr7	27689451	27689651	+	1	NA	NA	NA	211	NM_001112731	112415	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	0.035000	0.532338	
mm_46472.1	chr5	105126773	105126973	-	1	NA	NA	NA	12679	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.497512	75(CCATTTATGTCC,+,0.00)
mm_105397.1	chr11	103403801	103404001	-	1	NA	NA	NA	8763	NM_183034	353047	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.015000	0.577114	
mm_52198.1	chr6	100604560	100604760	+	1	NA	NA	NA	66497	NM_181590	72171	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	0.035000	0.457711	
mm_119496.1	chr14	47379966	47380166	+	1	NA	NA	NA	6206	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.010000	0.522388	
mm_151164.1	chr19	53194435	53194635	+	1	NA	NA	NA	50538	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.025000	0.497512	
mm_172185.1	chr6	50554137	50554337	-	1	NA	NA	NA	12237	NM_007808	13063	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0.000000	0.512438	
mm_166998.1	chr7	46838953	46839153	+	1	NA	NA	NA	-6751	NM_010699	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.010000	0.577114	-31(GCCTCTTTAAGA,-,0.00),63(GCCTTAATAGCT,+,0.00)
mm_59270.1	chr7	24899218	24899418	+	1	NA	NA	NA	1807	NM_007655	12518	Mm.1355	NM_007655	ENSMUSG00000003379	Cd79a	Ig-alpha|Iga|Igalpha|Ly-54|Ly54|mb-1	CD79A antigen (immunoglobulin-associated alpha)	protein-coding	0.035000	0.562189	
mm_147578.1	chr18	56431827	56432027	-	1	NA	NA	NA	-205	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.050000	0.582090	
mm_107437.1	chr12	36157103	36157303	+	1	NA	NA	NA	79	NM_146033	217473	Mm.130422	NM_146033	ENSMUSG00000036188	Ankmy2	AI035571|ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding	0.090000	0.676617	
mm_140688.1	chr17	13683404	13683604	-	1	NA	NA	NA	-77037	NM_010806	17356	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.015000	0.467662	
mm_81474.1	chr9	109931722	109931922	+	1	NA	NA	NA	48	NM_008633	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.105000	0.731343	
mm_170798.1	chr2	175469882	175470082	+	1	NA	NA	NA	-3	NM_001242943	545490	Mm.484023	NM_001242943	ENSMUSG00000078879	Zfp973	6230416C02Rik|Gm14306|Gm14436|OTTMUSG00000016614	zinc finger protein 973	protein-coding	0.015000	0.492537	
mm_86694.1	chr10	18469778	18469978	+	1	NA	NA	NA	-103	NM_001163592	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.035000	0.517413	
mm_75352.1	chr8	44316715	44316915	-	1	NA	NA	NA	-617324	NM_001079931	384814	Mm.491652	NM_001079931		Gm5347	EG384814	predicted gene 5347	protein-coding	0.005000	0.313433	-24(CCTTTTAGAATG,+,0.00)
mm_2968.1	chr1	133046076	133046276	+	1	NA	NA	NA	164	NM_001099276	240752	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphoinositide-3-kinase, class 2, beta polypeptide	protein-coding	0.135000	0.741294	
mm_19708.1	chr2	103797502	103797702	-	1	NA	NA	NA	38	NM_001111291	53872	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	0.090000	0.701493	
mm_148303.1	chr18	82920443	82920643	-	1	NA	NA	NA	17	NR_033307	75853	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.020000	0.452736	
mm_105751.1	chr11	109472882	109473082	-	1	NA	NA	NA	247	NM_134038	104681	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.030000	0.467662	-36(CGGTTTATAAGA,-,0.00)
mm_26692.1	chr3	156734646	156734846	+	1	NA	NA	NA	172952	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.005000	0.417910	
mm_21809.1	chr2	165065275	165065475	-	1	NA	NA	NA	9739	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.000000	0.462687	
mm_153073.1	chr19	32257122	32257322	-	1	NA	NA	NA	-46209	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.000000	0.472637	
mm_135958.1	chr16	74731280	74731480	-	1	NA	NA	NA	-320468	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.000000	0.373134	
mm_56734.1	chr6	115731007	115731207	-	1	NA	NA	NA	27892	NM_144805	94346	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0.035000	0.577114	
mm_166301.1	chr5	104440143	104440343	+	1	NA	NA	NA	4051	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.010000	0.442786	
mm_171600.1	chr4	147775727	147775927	-	1	NA	NA	NA	33961	NM_001127189	100041677	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157|OTTMUSG00000010679	zinc finger protein 984	protein-coding	0.010000	0.532338	
mm_22665.1	chr3	14871957	14872157	+	1	NA	NA	NA	8519	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.020000	0.388060	
mm_43397.1	chr5	135778606	135778806	+	1	NA	NA	NA	57	NM_008617	17448	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	0.100000	0.666667	
mm_139573.1	chr17	57062227	57062427	+	1	NA	NA	NA	50	NM_177638	224912	Mm.284447	NM_177638	ENSMUSG00000044279	Crb3	5730439B18|AU015179|AU041752	crumbs family member 3	protein-coding	0.070000	0.651741	
mm_87243.1	chr10	40936089	40936289	+	1	NA	NA	NA	52655	NM_031877	83767	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	0.015000	0.567164	
mm_167529.1	chr9	21290379	21290579	-	1	NA	NA	NA	730	NM_009878	12581	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	protein-coding	0.015000	0.407960	
mm_65188.1	chr7	19696446	19696646	-	1	NA	NA	NA	1852	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.055000	0.616915	
mm_89160.1	chr10	86095748	86095948	+	1	NA	NA	NA	-6	NR_038024	78170	Mm.444790	NR_038024		4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0.025000	0.517413	
mm_62705.1	chr7	110614241	110614441	+	1	NA	NA	NA	579	NM_177324	319934	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.095000	0.691542	
mm_138816.1	chr17	39847096	39847296	+	1	NA	NA	NA	4199	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.075000	0.567164	
mm_152906.1	chr19	26046365	26046565	-	1	NA	NA	NA	374054	NM_145831	226049	Mm.275572	NM_145831	ENSMUSG00000048138	Dmrt2	Terra	doublesex and mab-3 related transcription factor 2	protein-coding	0.005000	0.447761	
mm_148034.1	chr18	70244276	70244476	-	1	NA	NA	NA	208	NM_029346	75577	Mm.58214	NM_029346	ENSMUSG00000024512	Dynap	2310002L13Rik	dynactin associated protein	protein-coding	0.025000	0.462687	
mm_147069.1	chr18	35214886	35215086	-	1	NA	NA	NA	38	NM_178005	107065	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0.040000	0.492537	-75(GCCTATATACAG,+,0.00)
mm_121239.1	chr14	103056149	103056349	+	1	NA	NA	NA	9237	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.010000	0.383085	
mm_93687.1	chr10	117815593	117815793	-	1	NA	NA	NA	-22988	NM_134010	103468	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.015000	0.422886	
mm_71683.1	chr8	61224068	61224268	+	1	NA	NA	NA	-3	NM_021506	59009	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	0.165000	0.815920	
mm_77835.1	chr9	4376467	4376667	+	1	NA	NA	NA	-6970	NM_145609	78100	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	0.045000	0.611940	
mm_96648.1	chr11	69340701	69340901	+	1	NA	NA	NA	32	NR_027827	80515	Mm.5324	NM_020591	ENSMUSG00000043419	Chd3os	2310043C11Rik|A030009H04Rik|AA589459|AB041807|MNCb-2875|RNF21	chromodomain helicase DNA binding protein 3, opposite strand	ncRNA	0.165000	0.746269	
mm_158808.1	chrX	167304676	167304876	-	1	NA	NA	NA	25795	NM_001290757	170743	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	0.000000	0.393035	
mm_84649.1	chr9	71589103	71589303	-	1	NA	NA	NA	3157	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	0.000000	0.517413	-36(CTCTCTTAAAAC,-,0.00)
mm_133082.1	chr16	59636845	59637045	+	1	NA	NA	NA	0	NR_040564	75145	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	0.005000	0.383085	
mm_92130.1	chr10	64090181	64090381	-	1	NA	NA	NA	-26	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.040000	0.557214	
mm_89187.1	chr10	86346136	86346336	+	1	NA	NA	NA	45824	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.005000	0.358209	-5(GGGCATTTAAAG,-,0.00),-3(GCATTTAAAGCT,+,0.00)
mm_94102.1	chr10	128565912	128566112	-	1	NA	NA	NA	-78	NM_011119	18813	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	0.105000	0.686567	
mm_74682.1	chr8	14095548	14095748	-	1	NA	NA	NA	-227	NM_001145965	244310	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	discs, large (Drosophila) homolog-associated protein 2	protein-coding	0.080000	0.656716	
mm_114311.1	chr13	59769862	59770062	+	1	NA	NA	NA	-4	NR_015349	13996	Mm.490435	NR_015349	ENSMUSG00000089875	Etohd2	AW491659	ethanol decreased 2	ncRNA	0.085000	0.616915	
mm_51667.1	chr6	86365598	86365798	+	1	NA	NA	NA	15	NM_025591	66488	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	0.110000	0.731343	
mm_81532.1	chr9	110064313	110064513	+	1	NA	NA	NA	12392	NM_001311164	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.020000	0.572139	
mm_111147.1	chr12	82122702	82122902	-	1	NA	NA	NA	-47214	NM_001167983	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.010000	0.422886	-33(AGTTTTAAAAGC,-,0.00),-32(GTTTTAAAAGCT,+,0.00)
mm_104255.1	chr11	88924243	88924443	-	1	NA	NA	NA	18415	NR_045955	73921	Mm.439148	NR_045955	ENSMUSG00000087338	Scpep1os	4930405P13Rik	serine carboxypeptidase 1, opposite strand	ncRNA	0.020000	0.477612	
mm_126402.1	chr15	80235484	80235684	+	1	NA	NA	NA	1504	NM_178719	239555	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.005000	0.522388	
mm_9068.1	chr1	168215386	168215586	-	1	NA	NA	NA	216683	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.025000	0.452736	
mm_108020.1	chr12	73603800	73604000	+	1	NA	NA	NA	19104	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.025000	0.527363	
mm_29718.1	chr3	124425908	124426108	-	1	NA	NA	NA	20	NM_027939	71824	Mm.331353	NM_027939	ENSMUSG00000027973	1700006A11Rik	-	RIKEN cDNA 1700006A11 gene	protein-coding	0.005000	0.432836	
mm_49249.1	chr6	17307810	17308010	+	1	NA	NA	NA	270	NM_001243064	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.035000	0.552239	
mm_14725.1	chr2	144033017	144033217	+	1	NA	NA	NA	15	NM_207275	403171	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	0.020000	0.527363	
mm_25179.1	chr3	103279690	103279890	+	1	NA	NA	NA	497	NM_001079830	94093	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.205000	0.771144	
mm_136475.1	chr16	95808621	95808821	-	1	NA	NA	NA	89992	NR_040485	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.005000	0.507463	-33(GGCTATAAAAGA,-,0.00)
mm_132285.1	chr16	33062431	33062631	+	1	NA	NA	NA	10	NM_172823	239833	Mm.131951	NM_172823	ENSMUSG00000022802	Lmln	5330415H22Rik|AI465495	leishmanolysin-like (metallopeptidase M8 family)	protein-coding	0.155000	0.776119	
mm_97111.1	chr11	74653061	74653261	+	1	NA	NA	NA	3666	NM_001081158	74148	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.010000	0.606965	
mm_55767.1	chr6	78467410	78467610	-	1	NA	NA	NA	1364	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.010000	0.497512	
mm_116830.1	chr13	54683071	54683271	-	1	NA	NA	NA	4637	NM_001146025	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.025000	0.636816	
mm_130068.1	chr15	89309886	89310086	-	1	NA	NA	NA	-4254	NR_105924	102465981		NR_105924	ENSMUSG00000098442	Mir6959	Gm27807|mmu-mir-6959	microRNA 6959	ncRNA	0.005000	0.557214	83(GCTTTTAGGGGA,+,0.00)
mm_72964.1	chr8	92840069	92840269	+	1	NA	NA	NA	12872	NM_008610	17390	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	0.015000	0.512438	
mm_118897.1	chr14	26638091	26638291	+	1	NA	NA	NA	-6	NM_007479	11843	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.155000	0.746269	
mm_146447.1	chr18	85697831	85698031	+	1	NA	NA	NA	-697021	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.015000	0.567164	
mm_47450.1	chr5	123525308	123525508	-	1	NA	NA	NA	-1244	NM_023232	66593	Mm.46716	NM_023232	ENSMUSG00000029433	Diablo	0610041G12Rik|1700006L01Rik|AU040403|Smac	diablo, IAP-binding mitochondrial protein	protein-coding	0.025000	0.537313	
mm_135083.1	chr16	34513971	34514171	-	1	NA	NA	NA	-44	NM_177357	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.035000	0.597015	
mm_129313.1	chr15	77760694	77760894	-	1	NA	NA	NA	-5565	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.015000	0.407960	-8(TTTTTTAAAGGA,+,0.00)
mm_15259.1	chr2	155013348	155013548	+	1	NA	NA	NA	-122	NM_015770	50518	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	0.015000	0.507463	80(GTCTTTAAAAAT,-,0.00)
mm_11061.1	chr2	27515090	27515290	+	1	NA	NA	NA	43	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.160000	0.726368	-100(CCTTTAAGGCGC,+,0.00)
mm_28646.1	chr3	95228181	95228381	-	1	NA	NA	NA	-143	NM_172395	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.075000	0.621891	
mm_168361.1	chr1	115447968	115448168	+	1	NA	NA	NA	-237069	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.035000	0.631841	
mm_125423.1	chr15	41859838	41860038	+	1	NA	NA	NA	9782	NM_175456	223513	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0.010000	0.353234	
mm_79997.1	chr9	67041051	67041251	+	1	NA	NA	NA	2720	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.000000	0.482587	
mm_110301.1	chr12	32770887	32771087	-	1	NA	NA	NA	-49348	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.005000	0.422886	-69(TGTTCTAAAAGG,-,0.00)
mm_59375.1	chr7	25722791	25722991	+	1	NA	NA	NA	-3838	NM_028771	52132	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.005000	0.597015	
mm_166575.1	chr6	51465089	51465289	+	1	NA	NA	NA	4705	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.010000	0.308458	55(GTTTATAAAAAG,-,0.00)
mm_34569.1	chr4	150048118	150048318	+	1	NA	NA	NA	-20236	NR_029751	723848		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0.060000	0.606965	
mm_135863.1	chr16	60605181	60605381	-	1	NA	NA	NA	250	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0.090000	0.691542	
mm_120172.1	chr14	61037945	61038145	+	1	NA	NA	NA	-58	NM_001164155	29820	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.050000	0.631841	
mm_89783.1	chr10	101681766	101681966	+	1	NA	NA	NA	379	NM_001205098	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.030000	0.447761	
mm_80505.1	chr9	78615672	78615872	+	1	NA	NA	NA	226	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.050000	0.611940	-21(GCTTTTAGGCGC,+,0.00)
mm_170329.1	chr18	43477722	43477922	-	1	NA	NA	NA	-39536	NM_001291455	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.080000	0.582090	
mm_101163.1	chr11	16973179	16973379	-	1	NA	NA	NA	21869	NM_176982	319701	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.000000	0.437811	-93(TCTTATAAGGAA,+,0.00)
mm_25289.1	chr3	105803831	105804031	+	1	NA	NA	NA	-2550	NM_145541	109905	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein-1a	protein-coding	0.035000	0.547264	-23(CTCCATAAAGAG,-,0.00)
mm_63332.1	chr7	126950451	126950651	+	1	NA	NA	NA	16	NM_001252566	233878	Mm.283926	NM_144926	ENSMUSG00000030683	Sez6l2	AI835913|AW121566|BSRP-A|Psk1	seizure related 6 homolog like 2	protein-coding	0.040000	0.592040	84(CCTCATAAGGGC,+,0.00)
mm_111387.1	chr12	87477104	87477304	-	1	NA	NA	NA	-4905	NM_025507	66354	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	0.005000	0.502488	
mm_15921.1	chr2	165066612	165066812	+	1	NA	NA	NA	11076	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.015000	0.537313	
mm_161664.1	chr17	8801489	8801689	+	1	NA	NA	NA	-156	NM_011866	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.070000	0.706468	
mm_139109.1	chr17	47368796	47368996	+	1	NA	NA	NA	9	NM_001146211	64657	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	0.100000	0.631841	
mm_109075.1	chr12	104387565	104387765	+	1	NA	NA	NA	501	NM_009253	20717	Mm.395085	NM_009253	ENSMUSG00000079012	Serpina3m	3e46|AI195004|MMCM7|MMSPi2.4|Spi-2l|Spi-2rs1|Spi2-rs1|Spi2.4|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3M	protein-coding	0.010000	0.492537	-34(TCTTATATACCA,+,0.00)
mm_79735.1	chr9	62344691	62344891	+	1	NA	NA	NA	3448	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.050000	0.606965	
mm_87793.1	chr10	60299432	60299632	+	1	NA	NA	NA	15071	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.005000	0.522388	-100(GCCTTAAAACAC,+,0.00)
mm_118470.1	chr14	11553638	11553838	+	1	NA	NA	NA	185	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.105000	0.716418	
mm_89333.1	chr10	87933252	87933452	+	1	NA	NA	NA	-33319	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.000000	0.417910	
mm_99197.1	chr11	101011978	101012178	+	1	NA	NA	NA	2626	NM_001243051	11975	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0.010000	0.338308	
mm_96228.1	chr11	62550434	62550634	+	1	NA	NA	NA	-637	NM_011664	22187	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.030000	0.522388	
mm_138767.1	chr17	37062589	37062789	+	1	NA	NA	NA	16723	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.015000	0.537313	
mm_36222.1	chr4	62519928	62520128	-	1	NA	NA	NA	35	NM_008525	17025	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0.110000	0.721393	
mm_83947.1	chr9	56882912	56883112	-	1	NA	NA	NA	17908	NM_139001	121021	Mm.41329	NM_139001	ENSMUSG00000032911	Cspg4	4732461B14Rik|AN2|NG2	chondroitin sulfate proteoglycan 4	protein-coding	0.040000	0.592040	
mm_169814.1	chr16	20177021	20177221	-	1	NA	NA	NA	-887	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.065000	0.592040	
mm_6403.1	chr1	72862219	72862419	-	1	NA	NA	NA	12546	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.040000	0.537313	
mm_163672.1	chr13	81805393	81805593	+	1	NA	NA	NA	22201	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.005000	0.333333	
mm_158806.1	chrX	167264186	167264386	-	1	NA	NA	NA	43	NM_001313761	170744	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	0.005000	0.398010	
mm_62810.1	chr7	113207448	113207648	+	1	NA	NA	NA	83	NM_007489	11865	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0.135000	0.711443	
mm_62696.1	chr7	110122443	110122643	+	1	NA	NA	NA	484	NM_009516	22390	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.100000	0.721393	
mm_52521.1	chr6	115544592	115544792	+	1	NA	NA	NA	-12	NM_199033	381802	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.115000	0.656716	
mm_169389.1	chr14	42737487	42737687	+	1	NA	NA	NA	60348	NM_001244671	100042055	Mm.429109	NM_001244671	ENSMUSG00000095226	Gm10377	ENSMUSG00000072606	predicted gene 10377	protein-coding	0.040000	0.497512	
mm_82652.1	chr9	22024650	22024850	-	1	NA	NA	NA	21762	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.025000	0.631841	
mm_146437.1	chr18	84934506	84934706	+	1	NA	NA	NA	-419	NM_015798	50764	Mm.28369	NM_015798	ENSMUSG00000034391	Fbxo15	AU019763|Fbx15|ecat3	F-box protein 15	protein-coding	0.000000	0.462687	
mm_163323.1	chr12	7995574	7995774	+	1	NA	NA	NA	17997	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.507463	27(ATATTTAAAAGG,-,0.00)
mm_59604.1	chr7	28140086	28140286	+	1	NA	NA	NA	10720	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.050000	0.497512	
mm_59565.1	chr7	28089720	28089920	+	1	NA	NA	NA	18584	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.010000	0.532338	
mm_137126.1	chr17	22876258	22876458	+	1	NA	NA	NA	-9224	NM_001110254	240041	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	0.030000	0.537313	
mm_17780.1	chr2	32929692	32929892	-	1	NA	NA	NA	31463	NM_199302	227738	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0.010000	0.542289	
mm_49855.1	chr6	38434259	38434459	+	1	NA	NA	NA	434	NM_177185	320538	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	0.185000	0.840796	
mm_57386.1	chr6	124828228	124828428	-	1	NA	NA	NA	1156	NM_001326594	22225	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	0.015000	0.547264	
mm_56294.1	chr6	91515728	91515928	-	1	NA	NA	NA	60	NM_009531	22591	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	0.120000	0.721393	
mm_9399.1	chr1	172220368	172220568	-	1	NA	NA	NA	-573	NM_009813	12372	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.025000	0.442786	-35(GGTCTTTAAAGG,-,0.00),-34(GTCTTTAAAGGG,+,0.00),-34(GTCTTTAAAGGG,-,0.00),-33(TCTTTAAAGGGA,+,0.00)
mm_14490.1	chr2	131936606	131936806	+	1	NA	NA	NA	-14155	NM_001278257	26434	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion protein dublet	protein-coding	0.015000	0.636816	
mm_74551.1	chr8	10865222	10865422	-	1	NA	NA	NA	17132	NR_040705	320014	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.000000	0.452736	
mm_134056.1	chr16	6106581	6106781	-	1	NA	NA	NA	131094	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA	0.010000	0.393035	
mm_61269.1	chr7	66176424	66176624	+	1	NA	NA	NA	67009	NM_001081163	269941	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.010000	0.497512	
mm_143811.1	chr17	83690360	83690560	-	1	NA	NA	NA	-15703	NM_001171054	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.005000	0.427861	
mm_34417.1	chr4	145274030	145274230	+	1	NA	NA	NA	-27260	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.010000	0.527363	-76(TTCTCTTTAAGG,-,0.00)
mm_123169.1	chr14	57379293	57379493	-	1	NA	NA	NA	19090	NM_030004	68631	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.005000	0.467662	
mm_86779.1	chr10	20170679	20170879	+	1	NA	NA	NA	21859	NM_001198635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.020000	0.537313	
mm_129706.1	chr15	81729753	81729953	-	1	NA	NA	NA	66	NM_011241	19387	Mm.270975	NM_011241	ENSMUSG00000022391	Rangap1	C79654|Fug1|mKIAA1835	RAN GTPase activating protein 1	protein-coding	0.080000	0.601990	
mm_104257.1	chr11	88924489	88924689	-	1	NA	NA	NA	18661	NR_045955	73921	Mm.439148	NR_045955	ENSMUSG00000087338	Scpep1os	4930405P13Rik	serine carboxypeptidase 1, opposite strand	ncRNA	0.015000	0.562189	
mm_76390.1	chr8	84842929	84843129	-	1	NA	NA	NA	-2364	NM_009010	19358	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.015000	0.512438	
mm_89373.1	chr10	88739701	88739901	+	1	NA	NA	NA	8387	NM_025859	104303	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0.000000	0.268657	28(GCTTAAATACCA,+,0.00),73(CACTTTTTATGG,-,0.00),75(CTTTTTATGGCT,+,0.00)
mm_149435.1	chr19	11477559	11477759	+	1	NA	NA	NA	8291	NM_028595	73656	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.000000	0.363184	59(TTCCATTAAAAG,-,0.00),61(CCATTAAAAGTC,+,0.00)
mm_110136.1	chr12	26447387	26447587	-	1	NA	NA	NA	8965	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.015000	0.477612	
mm_36274.1	chr4	63729462	63729662	-	1	NA	NA	NA	15551	NM_177371	326623	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0.005000	0.417910	
mm_110902.1	chr12	75722622	75722822	-	1	NA	NA	NA	13007	NM_030750	81535	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.005000	0.422886	
mm_106782.1	chr12	4712240	4712440	+	1	NA	NA	NA	26043	NM_029107	74855	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	0.010000	0.562189	
mm_97146.1	chr11	75459350	75459550	+	1	NA	NA	NA	-2089	NR_030711	100042498	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0.005000	0.497512	
mm_124285.1	chr14	103048647	103048847	-	1	NA	NA	NA	1735	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.502488	
mm_124048.1	chr14	77856196	77856396	-	1	NA	NA	NA	18621	NM_025384	66148	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	0.000000	0.303483	
mm_162257.1	chrX	169112933	169113133	+	1	NA	NA	NA	155	NM_001287530	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.010000	0.492537	
mm_148151.1	chr18	77565037	77565237	-	1	NA	NA	NA	-1	NM_001164504	225743	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0.160000	0.776119	
mm_119548.1	chr14	48464083	48464283	+	1	NA	NA	NA	17831	NR_132324	218989	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	0.000000	0.318408	
mm_51421.1	chr6	78425945	78426145	+	1	NA	NA	NA	62	NM_009042	19692	Mm.142731	NM_009042	ENSMUSG00000059654	Reg1	-	regenerating islet-derived 1	protein-coding	0.005000	0.412935	-95(GTATATAAAAGG,-,0.00),-30(CTTTTTATAGAA,+,0.00),35(TTTTATATAGAC,+,0.00)
mm_136038.1	chr16	77421799	77421999	-	1	NA	NA	NA	92571	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.025000	0.507463	-28(CCCTTGAAAAGC,-,0.00)
mm_72663.1	chr8	84872114	84872314	+	1	NA	NA	NA	-44	NM_001168244	71846	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	0.140000	0.771144	
mm_50576.1	chr6	49052809	49053009	+	1	NA	NA	NA	16391	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.005000	0.472637	
mm_99323.1	chr11	101442581	101442781	+	1	NA	NA	NA	436	NM_011289	19942	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	0.095000	0.636816	
mm_136717.1	chr17	7945886	7946086	+	1	NA	NA	NA	372	NM_025789	66832	Mm.29830	NM_025789	ENSMUSG00000073471	Rsph3a	1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a	radial spoke 3A homolog (Chlamydomonas)	protein-coding	0.100000	0.691542	
mm_105876.1	chr11	114923875	114924075	-	1	NA	NA	NA	10411	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.015000	0.487562	
mm_47526.1	chr5	124171546	124171746	-	1	NA	NA	NA	15536	NM_001289472	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.010000	0.447761	
mm_75331.1	chr8	43180192	43180392	-	1	NA	NA	NA	-2830	NM_001160412	622117	Mm.390031	NM_001160412	ENSMUSG00000091490	Triml2	EG622117|Tu4	tripartite motif family-like 2	protein-coding	0.005000	0.437811	
mm_61077.1	chr7	51621786	51621986	+	1	NA	NA	NA	56	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.070000	0.587065	
mm_16624.1	chr2	5676862	5677062	-	1	NA	NA	NA	-916	NM_001290376	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.025000	0.492537	-33(TTCTTTATATGG,-,0.00),-31(CTTTATATGGGG,+,0.00)
mm_82740.1	chr9	26791806	26792006	-	1	NA	NA	NA	14511	NM_153803	244757	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0.010000	0.522388	
mm_37668.1	chr4	129118613	129118813	-	1	NA	NA	NA	1459	NM_001286083	15444	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	0.020000	0.582090	
mm_25997.1	chr3	134239197	134239397	+	1	NA	NA	NA	1286	NR_035435	100316832		NR_035435	ENSMUSG00000084564	Mir1895	Mirn1895|mmu-mir-1895	microRNA 1895	ncRNA	0.050000	0.532338	
mm_148765.1	chr19	6061446	6061646	+	1	NA	NA	NA	339	NM_013859	29805	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	0.135000	0.726368	
mm_64263.1	chr7	141746642	141746842	+	1	NA	NA	NA	-42269	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.025000	0.517413	
mm_22279.1	chr2	179976556	179976756	-	1	NA	NA	NA	-10	NM_001081092	228980	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	0.155000	0.751244	
mm_31939.1	chr4	86575702	86575902	+	1	NA	NA	NA	129	NM_178376	68441	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	0.115000	0.691542	
mm_695.1	chr1	40580269	40580469	+	1	NA	NA	NA	142	NM_177084	110895	Mm.108602	NM_177084	ENSMUSG00000026065	Slc9a4	AW990558|D730009J23Rik|NHE4	solute carrier family 9 (sodium/hydrogen exchanger), member 4	protein-coding	0.025000	0.462687	
mm_70510.1	chr8	12926208	12926408	+	1	NA	NA	NA	10415	NM_178076	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.025000	0.621891	
mm_14293.1	chr2	128862853	128863053	+	1	NA	NA	NA	-979	NM_024237	70370	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	0.015000	0.442786	
mm_160164.1	chr7	44665164	44665364	-	1	NA	NA	NA	239	NM_001271538	71960	Mm.158289	NM_028021	ENSMUSG00000030739	Myh14	2400004E04Rik|II-C|NHMCII|NMHC II-C	myosin, heavy polypeptide 14	protein-coding	0.050000	0.656716	
mm_165587.1	chr3	32547776	32547976	-	1	NA	NA	NA	18394	NM_024200	67414	Mm.290414	NM_024200	ENSMUSG00000027668	Mfn1	2310002F04Rik|6330416C07Rik|D3Ertd265e|HR2|mKIAA4032	mitofusin 1	protein-coding	0.000000	0.383085	
mm_134837.1	chr16	26359025	26359225	-	1	NA	NA	NA	12714	NM_016674	12737	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding	0.015000	0.537313	
mm_127500.1	chr15	101420412	101420612	+	1	NA	NA	NA	8109	NM_033073	110310	Mm.486285	NM_033073	ENSMUSG00000023039	Krt7	D15Wsu77e|K7|Krt2-7	keratin 7	protein-coding	0.040000	0.577114	
mm_104277.1	chr11	89696762	89696962	-	1	NA	NA	NA	74	NM_001327810	382543	Mm.60997	NM_172534	ENSMUSG00000047773	Ankfn1	4932411E22Rik|Gm1175|nmf9	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding	0.040000	0.537313	
mm_156526.1	chrX	150826827	150827027	+	1	NA	NA	NA	10	NM_001289875	634882		NM_001289875		Itih5l-ps	Gm386|Itih5l	inter-alpha (globulin) inhibitor H5-like, pseudogene	protein-coding	0.000000	0.522388	
mm_28992.1	chr3	101296461	101296661	-	1	NA	NA	NA	-8622	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.035000	0.542289	
mm_158600.1	chrX	151762593	151762793	-	1	NA	NA	NA	-40589	NM_021523	59026	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	0.015000	0.457711	
mm_61619.1	chr7	80186212	80186412	+	1	NA	NA	NA	-529	NM_013659	20352	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.035000	0.487562	
mm_106407.1	chr11	118909996	118910196	-	1	NA	NA	NA	-524	NM_001039167	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.040000	0.611940	-80(GCCTATTAAGGG,-,0.00)
mm_8408.1	chr1	151945186	151945386	-	1	NA	NA	NA	145034	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik|ENSMUSG00000073540	RIKEN cDNA 1700025G04 gene	protein-coding	0.015000	0.417910	
mm_67669.1	chr7	87493305	87493505	-	1	NA	NA	NA	107	NM_011661	22173	Mm.238127	NM_011661	ENSMUSG00000004651	Tyr	Oca1|albino|c|skc35	tyrosinase	protein-coding	0.000000	0.402985	
mm_20135.1	chr2	121380867	121381067	-	1	NA	NA	NA	-27	NM_080459	140476	Mm.467475	NM_080459	ENSMUSG00000033498	Strc	DFNB16	stereocilin	protein-coding	0.015000	0.562189	
mm_123372.1	chr14	63193398	63193598	-	1	NA	NA	NA	27	NM_201610	382913	Mm.239490	NM_201610	ENSMUSG00000035121	Neil2	Gm1212|NEH2	nei like 2 (E. coli)	protein-coding	0.045000	0.572139	
mm_143101.1	chr17	57081552	57081752	-	1	NA	NA	NA	-3142	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.065000	0.631841	
mm_76832.1	chr8	105171348	105171548	-	1	NA	NA	NA	774	NM_001161458	12400	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0.170000	0.771144	
mm_45466.1	chr5	67847352	67847552	-	1	NA	NA	NA	-21	NM_001038999	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.120000	0.786070	
mm_13595.1	chr2	112507092	112507292	+	1	NA	NA	NA	14228	NM_028844	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.010000	0.462687	
mm_67988.1	chr7	100856199	100856399	-	1	NA	NA	NA	7114	NM_177073	320100	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.005000	0.452736	
mm_33510.1	chr4	130914251	130914451	+	1	NA	NA	NA	1017	NM_010686	16792	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3	lysosomal-associated protein transmembrane 5	protein-coding	0.000000	0.497512	
mm_18219.1	chr2	50297055	50297255	-	1	NA	NA	NA	345	NR_040362	100502624	Mm.382825	NR_040361	ENSMUSG00000085862	Gm13483	OTTMUSG00000012382	predicted gene 13483	ncRNA	0.020000	0.487562	
mm_116834.1	chr13	54687533	54687733	-	1	NA	NA	NA	175	NM_001146025	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.125000	0.696517	-29(TCTTAAAGGGCC,+,0.00)
mm_48524.1	chr5	142903396	142903596	-	1	NA	NA	NA	3258	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.005000	0.422886	7(TTTTTAATAGTC,+,0.00)
mm_28817.1	chr3	96262239	96262439	-	1	NA	NA	NA	978	NM_033596	97122	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0.050000	0.562189	
mm_77558.1	chr8	123374221	123374421	-	1	NA	NA	NA	610	NM_001286363	66855	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0.085000	0.631841	
mm_135097.1	chr16	35000491	35000691	-	1	NA	NA	NA	-21830	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.010000	0.432836	-46(CCTTTTCTAGCT,+,0.00)
mm_11526.1	chr2	32625337	32625537	+	1	NA	NA	NA	0	NM_001198791	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.040000	0.631841	18(CCTTATAAATAG,+,0.00)
mm_127829.1	chr15	6565189	6565389	-	1	NA	NA	NA	-14558	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.030000	0.562189	
mm_118362.1	chr13	115101699	115101899	-	1	NA	NA	NA	165	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.045000	0.537313	
mm_125963.1	chr15	76270840	76271040	+	1	NA	NA	NA	-1101	NR_045747	100038659	Mm.448549	NR_045747		Mirt2	ENSMUSG00000075583|Gm10872|Gm24562	myocardial infraction associated transcript 2	ncRNA	0.010000	0.422886	
mm_19656.1	chr2	102923634	102923834	-	1	NA	NA	NA	-22069	NM_001039150	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.005000	0.437811	
mm_55113.1	chr6	50392826	50393026	-	1	NA	NA	NA	-10089	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.030000	0.517413	
mm_23752.1	chr3	69721934	69722134	+	1	NA	NA	NA	-21	NM_133787	97112	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0.095000	0.626866	
mm_120748.1	chr14	73238059	73238259	+	1	NA	NA	NA	268	NM_175116	67168	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.080000	0.502488	
mm_74329.1	chr8	126971101	126971301	+	1	NA	NA	NA	-122	NM_172762	52202	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	0.065000	0.601990	
mm_19789.1	chr2	108685736	108685936	-	1	NA	NA	NA	592454	NM_029790	76894	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.000000	0.402985	
mm_7537.1	chr1	124445585	124445785	-	1	NA	NA	NA	-400126	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.412935	
mm_72106.1	chr8	71611080	71611280	+	1	NA	NA	NA	156	NM_146211	234407	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	0.125000	0.701493	-99(TTCCCTTTAAGG,-,0.00),-97(CCCTTTAAGGAG,+,0.00),-96(CCTTTAAGGAGC,+,0.00),-43(CTCCTTTAAGGC,-,0.00),-42(TCCTTTAAGGCG,+,0.00),-41(CCTTTAAGGCGC,+,0.00)
mm_95460.1	chr11	50378280	50378480	+	1	NA	NA	NA	661	NM_001347487	59013	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.080000	0.676617	
mm_91669.1	chr10	43174445	43174645	-	1	NA	NA	NA	-15	NM_175407	109205	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis-binding protein homolog (Drosophila)	protein-coding	0.120000	0.751244	
mm_89411.1	chr10	90829447	90829647	+	1	NA	NA	NA	-107	NM_001347054	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.120000	0.731343	
mm_114387.1	chr13	63251637	63251837	+	1	NA	NA	NA	11708	NR_110521	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.000000	0.472637	
mm_34070.1	chr4	138456780	138456980	+	1	NA	NA	NA	1732	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.025000	0.482587	
mm_141873.1	chr17	34839249	34839449	-	1	NA	NA	NA	2330	NM_001163770	112403	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	0.025000	0.393035	65(CCCCCTAAAAAC,-,0.00),67(CCCTAAAAACCC,+,0.00)
mm_54708.1	chr6	39705647	39705847	-	1	NA	NA	NA	19716	NM_139294	109880	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	0.020000	0.512438	
mm_149393.1	chr19	11387405	11387605	+	1	NA	NA	NA	12017	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.000000	0.407960	
mm_20874.1	chr2	148701078	148701278	-	1	NA	NA	NA	20058	NM_028986	74533	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0.000000	0.502488	
mm_37874.1	chr4	132353629	132353829	-	1	NA	NA	NA	-43	NR_003270	399101	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0.075000	0.527363	
mm_48971.1	chr6	4752707	4752907	+	1	NA	NA	NA	5501	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.005000	0.393035	-6(GGCCATAAAGGC,-,0.00),19(CCTTTAATGCTG,+,0.00)
mm_22338.1	chr2	180709956	180710156	-	1	NA	NA	NA	-57	NM_001291432	23856	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.110000	0.592040	
mm_29593.1	chr3	119742604	119742804	-	1	NA	NA	NA	40684	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.000000	0.328358	
mm_125947.1	chr15	76248513	76248713	+	1	NA	NA	NA	422	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.020000	0.547264	
mm_159456.1	chr3	153879649	153879849	-	1	NA	NA	NA	25142	NM_001282054	55993	Mm.272226	NM_031870	ENSMUSG00000005493	Msh4	4930485C04Rik|AV144863|mMsh4	mutS homolog 4	protein-coding	0.000000	0.378109	
mm_88197.1	chr10	70097124	70097324	+	1	NA	NA	NA	103	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.220000	0.870647	
mm_42660.1	chr5	119670567	119670767	+	1	NA	NA	NA	-195	NM_198052	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.075000	0.691542	
mm_38811.1	chr4	148444377	148444577	-	1	NA	NA	NA	274	NM_027873	71707	Mm.292503	NM_027873	ENSMUSG00000047719	Ubiad1	1200002M06Rik|AI426463|AW320947|Tere1	UbiA prenyltransferase domain containing 1	protein-coding	0.050000	0.611940	
mm_114903.1	chr13	94788812	94789012	+	1	NA	NA	NA	-31	NM_009321	21371	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0.120000	0.691542	
mm_92604.1	chr10	80105586	80105786	-	1	NA	NA	NA	-2984	NM_183426	216161	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch homolog 2 (Drosophila)	protein-coding	0.010000	0.597015	
mm_149127.1	chr19	8993258	8993458	+	1	NA	NA	NA	4074	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.015000	0.527363	
mm_15816.1	chr2	164508153	164508353	+	1	NA	NA	NA	10728	NM_133779	78928	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	0.020000	0.562189	
mm_4612.1	chr1	178555776	178555976	+	1	NA	NA	NA	26751	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.010000	0.417910	
mm_166797.1	chr7	3330790	3330990	+	1	NA	NA	NA	-5695	NM_133189	81904	Mm.214994	NM_133189	ENSMUSG00000069806	Cacng7	-	calcium channel, voltage-dependent, gamma subunit 7	protein-coding	0.015000	0.532338	
mm_83101.1	chr9	40333181	40333381	-	1	NA	NA	NA	-191	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.035000	0.537313	
mm_91631.1	chr10	42182140	42182340	-	1	NA	NA	NA	94502	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.025000	0.368159	
mm_157389.1	chrX	38252435	38252635	-	1	NA	NA	NA	-54	NM_001289728	245386	Mm.72979	NM_172930	ENSMUSG00000036502	Tmem255a	4933417N17|6430550H21Rik|Fam70a	transmembrane protein 255A	protein-coding	0.035000	0.666667	
mm_165633.1	chr3	69004313	69004513	-	1	NA	NA	NA	157	NM_026641	68259	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	0.040000	0.487562	
mm_147779.1	chr18	61536696	61536896	-	1	NA	NA	NA	-260	NM_177828	328967	Mm.488098	NM_177828	ENSMUSG00000045094	Arhgef37	4933429F08Rik	Rho guanine nucleotide exchange factor (GEF) 37	protein-coding	0.030000	0.512438	
mm_119684.1	chr14	53418273	53418473	+	1	NA	NA	NA	835556	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.616915	
mm_48882.1	chr5	151176347	151176547	-	1	NA	NA	NA	13746	NM_001163493	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.010000	0.427861	
mm_83537.1	chr9	46233164	46233364	-	1	NA	NA	NA	2035	NM_001289833	11814	Mm.390161	NM_023114	ENSMUSG00000032081	Apoc3	apo-CIII|apoC-III	apolipoprotein C-III	protein-coding	0.010000	0.532338	
mm_152048.1	chr19	6232204	6232404	-	1	NA	NA	NA	3536	NM_198168	225849	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0.050000	0.601990	
mm_88139.1	chr10	69398907	69399107	+	1	NA	NA	NA	-46095	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.110000	0.711443	
mm_32193.1	chr4	101292230	101292430	+	1	NA	NA	NA	-27048	NM_146145	16451	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.085000	0.597015	
mm_141090.1	chr17	25979793	25979993	-	1	NA	NA	NA	5981	NM_001347334	50817	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	0.000000	0.502488	
mm_3952.1	chr1	164062018	164062218	+	1	NA	NA	NA	42	NM_001164059	20343	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.015000	0.572139	86(GCCTATAAGAGA,-,0.00)
mm_64973.1	chr7	16719833	16720033	-	1	NA	NA	NA	-1996	NM_011927	26368	Mm.27096	NM_011927	ENSMUSG00000007209	Ceacam9	AA410097|AW545709|Cea-5|Cea5|mmCGM8	carcinoembryonic antigen-related cell adhesion molecule 9	protein-coding	0.025000	0.502488	
mm_22344.1	chr2	180892835	180893035	-	1	NA	NA	NA	-1105	NR_029538	723951		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA	0.155000	0.686567	
mm_89442.1	chr10	92202914	92203114	+	1	NA	NA	NA	-37836	NR_028262	110333	Mm.429764	NR_028262		Rmst	100041799|AI853140|C230053E11Rik|D930049J19Rik|Dmt2|Gm3515|M2|Ncrms	rhabdomyosarcoma 2 associated transcript (non-coding RNA)	ncRNA	0.005000	0.517413	-74(GCTTTTAGAGAG,+,0.00)
mm_9318.1	chr1	171648408	171648608	-	1	NA	NA	NA	491	NM_001347184	75345	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	0.015000	0.298507	
mm_17662.1	chr2	32083217	32083417	-	1	NA	NA	NA	388	NM_175511	241303	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.110000	0.661692	
mm_42406.1	chr5	115011229	115011429	+	1	NA	NA	NA	-195	NM_029012	74585	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	0.205000	0.835821	
mm_155035.1	chrX	42069367	42069567	+	1	NA	NA	NA	1069	NR_125870	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.005000	0.333333	-80(TTTTTTAAAGAC,+,0.00)
mm_131598.1	chr16	18893676	18893876	+	1	NA	NA	NA	17026	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.005000	0.437811	
mm_148450.1	chr19	3979900	3980100	+	1	NA	NA	NA	-6570	NM_001302479	71670	Mm.29735	NM_027857	ENSMUSG00000024866	Acy3	0610006H10Rik|AA3|AAIII|AW107362|Acy-3|HCBP1	aspartoacylase (aminoacylase) 3	protein-coding	0.015000	0.572139	
mm_117440.1	chr13	74734124	74734324	-	1	NA	NA	NA	37	NM_001301158	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.010000	0.517413	
mm_76841.1	chr8	105288999	105289199	-	1	NA	NA	NA	429	NM_001166394	74356	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0.030000	0.542289	
mm_165829.1	chr3	152114821	152115021	-	1	NA	NA	NA	50979	NM_016867	54120	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.035000	0.562189	
mm_69621.1	chr7	137314127	137314327	-	1	NA	NA	NA	218	NM_001113415	13593	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.135000	0.681592	
mm_60569.1	chr7	44481404	44481604	+	1	NA	NA	NA	-3013	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.492537	
mm_81402.1	chr9	109040783	109040983	+	1	NA	NA	NA	2316	NM_001284332	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.015000	0.537313	
mm_5199.1	chr1	13373974	13374174	-	1	NA	NA	NA	9	NM_008678	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.095000	0.676617	
mm_39348.1	chr5	8893849	8894049	+	1	NA	NA	NA	228	NM_008830	18670	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.100000	0.721393	
mm_4227.1	chr1	171345596	171345796	+	1	NA	NA	NA	-3	NM_011070	18637	Mm.10756	NM_011070	ENSMUSG00000006412	Pfdn2	ESTM27|W48336	prefoldin 2	protein-coding	0.095000	0.696517	
mm_93159.1	chr10	93165857	93166057	-	1	NA	NA	NA	3172	NR_035452	100316689		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	0.020000	0.422886	
mm_87557.1	chr10	54579200	54579400	+	1	NA	NA	NA	503378	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.020000	0.388060	
mm_105342.1	chr11	102997325	102997525	-	1	NA	NA	NA	2496	NR_105896	102466988		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.025000	0.557214	
mm_10823.1	chr2	24367493	24367693	+	1	NA	NA	NA	-17804	NM_177611	215632	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.135000	0.761194	
mm_11840.1	chr2	45112175	45112375	+	1	NA	NA	NA	15	NR_110571	433424	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|OTTMUSG00000012358|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0.020000	0.398010	
mm_149962.1	chr19	28990360	28990560	+	1	NA	NA	NA	108	NM_025950	67072	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	0.105000	0.741294	
mm_158493.1	chrX	142338891	142339091	-	1	NA	NA	NA	-32793	NM_021487	66240	Mm.58507	NM_021487	ENSMUSG00000090122	Kcne1l	1500015C14Rik|Kcne5|Mink	potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	protein-coding	0.025000	0.517413	-61(CTGTTTAAAAAG,-,0.00)
mm_172335.1	chr7	10953463	10953663	+	1	NA	NA	NA	-48513	NM_001185173	665780	Mm.482067	NM_001185173	ENSMUSG00000095339	Zscan4b	EG665780	zinc finger and SCAN domain containing 4B	protein-coding	0.050000	0.532338	-31(GTCTATTTAAGG,-,0.00),-29(CTATTTAAGGAC,+,0.00)
mm_37851.1	chr4	132211950	132212150	-	1	NA	NA	NA	206	NM_145393	213541	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0.170000	0.731343	
mm_106259.1	chr11	117875673	117875873	-	1	NA	NA	NA	-2247	NM_027919	71776	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.020000	0.597015	
mm_1678.1	chr1	74816971	74817171	+	1	NA	NA	NA	25052	NM_009518	22409	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0.095000	0.671642	-8(TGCCTTTTAAGC,-,0.00),-6(CCTTTTAAGCTG,+,0.00)
mm_169195.1	chr13	66113320	66113520	+	1	NA	NA	NA	-33	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.020000	0.517413	
mm_140965.1	chr17	24658411	24658611	-	1	NA	NA	NA	-86	NM_001099664	381073	Mm.291772	NM_001099664	ENSMUSG00000071230	Npw	Gm935	neuropeptide W	protein-coding	0.075000	0.597015	
mm_56700.1	chr6	114921708	114921908	-	1	NA	NA	NA	-56	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.020000	0.532338	
mm_31206.1	chr4	43875441	43875641	+	1	NA	NA	NA	11	NM_016678	53614	Mm.331573	NM_016678	ENSMUSG00000028476	Reck	St15|mRECK	reversion-inducing-cysteine-rich protein with kazal motifs	protein-coding	0.115000	0.746269	
mm_159227.1	chr2	131042995	131043195	-	1	NA	NA	NA	-7	NM_001136063	14588	Mm.198399	NM_020014	ENSMUSG00000027316	Gfra4	AW060733|G630015H18Rik	glial cell line derived neurotrophic factor family receptor alpha 4	protein-coding	0.005000	0.606965	
mm_81771.1	chr9	114422030	114422230	+	1	NA	NA	NA	21035	NM_001200002	100504715	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	0.010000	0.353234	
mm_162751.1	chr10	59450767	59450967	-	1	NA	NA	NA	-9088	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.010000	0.557214	
mm_160504.1	chr9	18816220	18816420	-	1	NA	NA	NA	-28	NM_146605	258598	Mm.271453	NM_146605	ENSMUSG00000078116	Olfr828	MOR149-1	olfactory receptor 828	protein-coding	0.000000	0.303483	
mm_60398.1	chr7	44475434	44475634	+	1	NA	NA	NA	5187	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.552239	
mm_30314.1	chr3	151731300	151731500	-	1	NA	NA	NA	18559	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.000000	0.358209	-11(CCCTTTAGAGTG,+,0.00)
mm_29840.1	chr3	129822424	129822624	-	1	NA	NA	NA	-19	NM_009102	20132	Mm.278758	NM_009102	ENSMUSG00000028012	Rrh	-	retinal pigment epithelium derived rhodopsin homolog	protein-coding	0.025000	0.447761	
mm_154146.1	chr19	58454218	58454418	-	1	NA	NA	NA	1080	NM_001285457	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.065000	0.626866	
mm_30502.1	chr3	157924963	157925163	-	1	NA	NA	NA	0	NM_145953	107869	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	0.050000	0.587065	
mm_46938.1	chr5	114813820	114814020	-	1	NA	NA	NA	56	NR_027818	66236	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	0.115000	0.701493	
mm_33587.1	chr4	132563367	132563567	+	1	NA	NA	NA	-600	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.010000	0.522388	
mm_25377.1	chr3	107211339	107211539	+	1	NA	NA	NA	10293	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.532338	
mm_145848.1	chr18	65449846	65450046	+	1	NA	NA	NA	18949	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.412935	
mm_14371.1	chr2	129629996	129630196	+	1	NA	NA	NA	36927	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.010000	0.582090	
mm_21518.1	chr2	163630939	163631139	-	1	NA	NA	NA	-13811	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.020000	0.462687	-66(CCTTTTCTAGCC,+,0.00),-47(CCTTTACAAGCC,+,0.00)
mm_79079.1	chr9	46242232	46242432	+	1	NA	NA	NA	1488	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.020000	0.517413	
mm_89175.1	chr10	86338316	86338516	+	1	NA	NA	NA	38004	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.015000	0.562189	
mm_121247.1	chr14	103057179	103057379	+	1	NA	NA	NA	10267	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.035000	0.452736	
mm_151800.1	chr19	5424417	5424617	-	1	NA	NA	NA	462	NM_024176	66556	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	0.070000	0.651741	
mm_34188.1	chr4	140701435	140701635	+	1	NA	NA	NA	62	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.105000	0.606965	
mm_15598.1	chr2	160645948	160646148	+	1	NA	NA	NA	151	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.105000	0.641791	
mm_24088.1	chr3	87975855	87976055	+	1	NA	NA	NA	4862	NM_016701	18008	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46	nestin	protein-coding	0.000000	0.437811	
mm_33190.1	chr4	126227536	126227736	+	1	NA	NA	NA	-24926	NM_146153	230753	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0.025000	0.587065	
mm_136634.1	chr17	5700085	5700285	+	1	NA	NA	NA	-98472	NR_045081	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.015000	0.447761	
mm_62754.1	chr7	112023355	112023555	+	1	NA	NA	NA	-51	NM_133758	74996	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	0.180000	0.776119	
mm_54293.1	chr6	29280891	29281091	-	1	NA	NA	NA	-150	NM_001101486	245884	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	0.020000	0.542289	
mm_127554.1	chr15	102150440	102150640	+	1	NA	NA	NA	-35	NM_146064	223920	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	0.015000	0.512438	
mm_67058.1	chr7	67373011	67373211	-	1	NA	NA	NA	-253	NM_001291195	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.065000	0.616915	
mm_159189.1	chr2	117121323	117121523	+	1	NA	NA	NA	352	NM_033524	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.180000	0.815920	
mm_72387.1	chr8	81756804	81757004	+	1	NA	NA	NA	414342	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.010000	0.502488	
mm_77447.1	chr8	121792242	121792442	-	1	NA	NA	NA	37227	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.025000	0.517413	
mm_84284.1	chr9	62886511	62886711	-	1	NA	NA	NA	-24587	NR_003965	677044	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	ENSMUSG00000074250	ribsomal protein S2 pseudogene	pseudo	0.000000	0.283582	
mm_41644.1	chr5	98033206	98033406	+	1	NA	NA	NA	-2344	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.010000	0.437811	-72(GCTTTTAGAGCT,+,0.00)
mm_153327.1	chr19	38124274	38124474	-	1	NA	NA	NA	437	NM_011255	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.035000	0.552239	
mm_141368.1	chr17	28981223	28981423	-	1	NA	NA	NA	26614	NM_134115	106504	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0.010000	0.477612	
mm_38150.1	chr4	134914892	134915092	-	1	NA	NA	NA	-76	NM_027935	71817	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0.100000	0.626866	
mm_171013.1	chr2	83947420	83947620	-	1	NA	NA	NA	-6294	NM_027964	71861	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.020000	0.497512	
mm_124562.1	chr14	123626867	123627067	-	1	NA	NA	NA	177	NM_177393	338370	Mm.255348	NM_177393	ENSMUSG00000000197	Nalcn	A530023G15Rik|AI849508|Vgcnl1	sodium leak channel, non-selective	protein-coding	0.100000	0.671642	
mm_89625.1	chr10	96266536	96266736	+	1	NA	NA	NA	40429	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.020000	0.507463	
mm_25918.1	chr3	131156261	131156461	+	1	NA	NA	NA	43570	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.010000	0.353234	59(CAGTTTTAAAGA,-,0.00)
mm_163832.1	chr14	19417565	19417765	+	1	NA	NA	NA	184922	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.353234	
mm_151408.1	chr19	56548501	56548701	+	1	NA	NA	NA	340	NM_025811	66866	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.120000	0.706468	
mm_152338.1	chr19	9982345	9982545	-	1	NA	NA	NA	-201	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.055000	0.567164	
mm_96386.1	chr11	67245676	67245876	+	1	NA	NA	NA	7964	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.025000	0.532338	
mm_60309.1	chr7	44137154	44137354	+	1	NA	NA	NA	-36	NM_008454	16615	Mm.440887	NM_008454	ENSMUSG00000038968	Klk1b16	Klk16|mGk-16	kallikrein 1-related peptidase b16	protein-coding	0.000000	0.552239	
mm_59325.1	chr7	25316730	25316930	+	1	NA	NA	NA	-334	NM_001160400	269878	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	0.075000	0.676617	
mm_134636.1	chr16	21761774	21761974	-	1	NA	NA	NA	25960	NM_023737	74147	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0.010000	0.412935	
mm_109238.1	chr12	108893841	108894041	+	1	NA	NA	NA	233	NM_001164314	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.110000	0.716418	
mm_117875.1	chr13	98926235	98926435	-	1	NA	NA	NA	49	NM_178716	238799	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.135000	0.721393	
mm_55208.1	chr6	52217377	52217577	-	1	NA	NA	NA	1096	NM_010455	15404	Mm.294826	NM_010455	ENSMUSG00000038236	Hoxa7	AV118143|Hox-1.1|M6	homeobox A7	protein-coding	0.075000	0.502488	
mm_62900.1	chr7	116504345	116504545	+	1	NA	NA	NA	76	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.080000	0.661692	
mm_118210.1	chr13	110060844	110061044	-	1	NA	NA	NA	157135	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.015000	0.497512	
mm_4325.1	chr1	171851936	171852136	+	1	NA	NA	NA	12339	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.010000	0.398010	-99(GCTTTTATAAAA,+,0.00),-48(ACTTATAAAGGA,+,0.00)
mm_31310.1	chr4	46082082	46082282	+	1	NA	NA	NA	42960	NM_021883	21916	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0.015000	0.487562	
mm_117302.1	chr13	67332404	67332604	-	1	NA	NA	NA	56	NM_177622	218314	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding	0.035000	0.522388	
mm_61318.1	chr7	68148473	68148673	+	1	NA	NA	NA	115660	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.025000	0.522388	
mm_158654.1	chrX	155623992	155624192	-	1	NA	NA	NA	-765	NM_001093750	211612	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	0.075000	0.597015	
mm_23520.1	chr3	60603660	60603860	+	1	NA	NA	NA	102581	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.015000	0.527363	
mm_94283.1	chr11	3983621	3983821	+	1	NA	NA	NA	85	NM_016922	53897	Mm.103414	NM_016922	ENSMUSG00000049721	Gal3st1	Cst|Gcst	galactose-3-O-sulfotransferase 1	protein-coding	0.130000	0.815920	
mm_112987.1	chr13	21415922	21416122	+	1	NA	NA	NA	-13267	NM_023685	72739	Mm.296071	NM_023685	ENSMUSG00000021327	Zkscan3	2810435N07Rik|AA408594|AI132359|Skz1|Zf47|Zfp-47|Zfp306|Zfp307|mszf35	zinc finger with KRAB and SCAN domains 3	protein-coding	0.005000	0.338308	
mm_65506.1	chr7	25745136	25745336	-	1	NA	NA	NA	9465	NM_178089	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.020000	0.432836	
mm_33024.1	chr4	121134557	121134757	+	1	NA	NA	NA	-25431	NM_001081312	69469	Mm.481120	NM_001081312	ENSMUSG00000078577	Tmco2	1700028F16Rik	transmembrane and coiled-coil domains 2	protein-coding	0.010000	0.447761	
mm_132635.1	chr16	39119390	39119590	+	1	NA	NA	NA	217145	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.020000	0.343284	
mm_60548.1	chr7	44480685	44480885	+	1	NA	NA	NA	-3732	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.412935	
mm_147189.1	chr18	37638628	37638828	-	1	NA	NA	NA	-5	NM_001159275	83885	Mm.193029	NM_001159275	ENSMUSG00000050304	Slc25a2	Ornt2	solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2	protein-coding	0.055000	0.601990	
mm_128640.1	chr15	59275093	59275293	-	1	NA	NA	NA	-31755	NR_045613	100416830	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0.005000	0.462687	
mm_73704.1	chr8	111686605	111686805	+	1	NA	NA	NA	2969	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.025000	0.597015	
mm_92569.1	chr10	79881045	79881245	-	1	NA	NA	NA	1478	NM_011178	19152	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	0.030000	0.552239	
mm_127654.1	chr15	102498417	102498617	+	1	NA	NA	NA	18487	NM_001163643	26404	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0.010000	0.447761	
mm_168278.1	chr1	105764466	105764666	-	1	NA	NA	NA	-16157	NM_009399	21934	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.005000	0.467662	
mm_133695.1	chr16	92818709	92818909	+	1	NA	NA	NA	7265	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.015000	0.502488	
mm_108498.1	chr12	83763538	83763738	+	1	NA	NA	NA	4	NM_130887	170721	Mm.133443	NM_130887	ENSMUSG00000021223	Papln	E030033C16Rik	papilin, proteoglycan-like sulfated glycoprotein	protein-coding	0.050000	0.631841	
mm_137254.1	chr17	24549031	24549231	+	1	NA	NA	NA	-819	NM_013630	18763	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystic kidney disease 1 homolog	protein-coding	0.030000	0.467662	
mm_159429.1	chr3	108881771	108881971	-	1	NA	NA	NA	8137	NM_177091	320181	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0.020000	0.492537	
mm_173248.1	chrX	91845438	91845638	+	1	NA	NA	NA	-62562	NM_028847	74271	Mm.141337	NM_028847	ENSMUSG00000061392	Mageb5	1700056A17Rik|mMage-b5	melanoma antigen, family B, 5	protein-coding	0.060000	0.532338	-31(CTCCTTAAGAGG,-,0.00)
mm_10941.1	chr2	25500727	25500927	+	1	NA	NA	NA	49	NM_013908	30839	Mm.29170	NM_013908	ENSMUSG00000015095	Fbxw5	AI159739|Fbw5	F-box and WD-40 domain protein 5	protein-coding	0.110000	0.716418	
mm_53774.1	chr6	146115697	146115897	+	1	NA	NA	NA	181650	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.000000	0.467662	
mm_93873.1	chr10	123196874	123197074	-	1	NA	NA	NA	45	NM_027604	14479	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	0.145000	0.756219	
mm_133189.1	chr16	72663649	72663849	+	1	NA	NA	NA	600	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.070000	0.646766	
mm_10267.1	chr2	9876026	9876226	+	1	NA	NA	NA	2474	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.020000	0.417910	
mm_103713.1	chr11	79523635	79523835	-	1	NA	NA	NA	27	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.030000	0.462687	
mm_78366.1	chr9	26999616	26999816	+	1	NA	NA	NA	39	NM_001326361	77862	Mm.16925	NM_144543	ENSMUSG00000035443	Thyn1	D730042P09Rik|HSPC144|MDS012|MY105|Thy28	thymocyte nuclear protein 1	protein-coding	0.060000	0.572139	
mm_17474.1	chr2	28560448	28560648	-	1	NA	NA	NA	2855	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.040000	0.542289	
mm_123111.1	chr14	55884272	55884472	-	1	NA	NA	NA	-116	NM_019820	56410	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0.010000	0.592040	
mm_23394.1	chr3	57735992	57736192	+	1	NA	NA	NA	30	NR_130743	24017	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0.060000	0.587065	
mm_117501.1	chr13	78200040	78200240	-	1	NA	NA	NA	-1267	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.010000	0.427861	
mm_94130.1	chr10	128695897	128696097	-	1	NA	NA	NA	271	NM_177411	19344	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	0.070000	0.726368	
mm_49976.1	chr6	40891132	40891332	+	1	NA	NA	NA	-3738	NM_139296	194357	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0.005000	0.482587	
mm_128015.1	chr15	20666672	20666872	-	1	NA	NA	NA	-22	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.045000	0.542289	
mm_122771.1	chr14	54398541	54398741	-	1	NA	NA	NA	10831	NM_001253680	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.020000	0.472637	-45(CCTTTTAAGACA,+,0.00)
mm_169609.1	chr15	37007156	37007356	-	1	NA	NA	NA	146	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.150000	0.761194	
mm_162745.1	chr10	56389305	56389505	+	1	NA	NA	NA	12105	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.005000	0.368159	
mm_31955.1	chr4	86844685	86844885	+	1	NA	NA	NA	12582	NM_009096	20104	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	0.015000	0.462687	
mm_68428.1	chr7	109807889	109808089	-	1	NA	NA	NA	-26444	NM_020610	78593	Mm.275374	NM_020610	ENSMUSG00000034825	Nrip3	A330103B05Rik|D7H11orf14|ICRFP703B1614Q5.2	nuclear receptor interacting protein 3	protein-coding	0.010000	0.537313	
mm_153488.1	chr19	41310230	41310430	-	1	NA	NA	NA	-46326	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.005000	0.452736	
mm_147365.1	chr18	43393264	43393464	-	1	NA	NA	NA	13	NM_009468	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.020000	0.447761	
mm_26933.1	chr3	20262509	20262709	-	1	NA	NA	NA	13124	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.015000	0.412935	
mm_31780.1	chr4	63560557	63560757	+	1	NA	NA	NA	297	NM_144905	230279	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.025000	0.542289	
mm_90132.1	chr10	117719129	117719329	+	1	NA	NA	NA	-8471	NM_001288586	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.020000	0.522388	77(CTCTATTTAAAC,-,0.00)
mm_157454.1	chrX	43428754	43428954	-	1	NA	NA	NA	-154070	NM_011855	23963	Mm.327698	NM_011855	ENSMUSG00000016150	Tenm1	Odz1|Odz2|TCAP-1|Ten-m1|ten-1	teneurin transmembrane protein 1	protein-coding	0.050000	0.597015	
mm_35771.1	chr4	46389324	46389524	-	1	NA	NA	NA	-1	NM_029086	74753	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0.130000	0.681592	
mm_126522.1	chr15	81936760	81936960	+	1	NA	NA	NA	101	NM_145473	105859	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	0.040000	0.601990	
mm_134664.1	chr16	22251726	22251926	-	1	NA	NA	NA	14179	NM_001330554	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding	0.000000	0.278607	
mm_50320.1	chr6	47953363	47953563	+	1	NA	NA	NA	73	NM_178898	101197	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	0.075000	0.616915	
mm_46075.1	chr5	92323695	92323895	-	1	NA	NA	NA	4284	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.015000	0.388060	77(CCTTTAATACAT,+,0.00)
mm_143505.1	chr17	71680602	71680802	-	1	NA	NA	NA	7441	NM_177087	320159	Mm.187372	NM_177087	ENSMUSG00000045761	Fam179a	4632412N22Rik	family with sequence similarity 179, member A	protein-coding	0.010000	0.502488	
mm_111183.1	chr12	83984732	83984932	-	1	NA	NA	NA	-3029	NM_134188	171210	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	0.005000	0.497512	
mm_87775.1	chr10	60294573	60294773	+	1	NA	NA	NA	10212	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.020000	0.582090	
mm_38389.1	chr4	138819065	138819265	-	1	NA	NA	NA	92	NM_011110	18784	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	0.020000	0.597015	
mm_165507.1	chr2	167924907	167925107	-	1	NA	NA	NA	-7320	NM_011201	19246	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.045000	0.492537	
mm_164162.1	chr15	73148459	73148659	-	1	NA	NA	NA	36388	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.015000	0.527363	
mm_86040.1	chr9	114417521	114417721	-	1	NA	NA	NA	16526	NM_001200002	100504715	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	0.020000	0.462687	
mm_43400.1	chr5	135789114	135789314	+	1	NA	NA	NA	10565	NM_008617	17448	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	0.025000	0.621891	
mm_101619.1	chr11	35842154	35842354	-	1	NA	NA	NA	-7726	NM_025936	104458	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.030000	0.567164	
mm_45893.1	chr5	88565458	88565658	-	1	NA	NA	NA	518	NM_001289775	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.160000	0.800995	
mm_91408.1	chr10	31445725	31445925	-	1	NA	NA	NA	96	NM_009413	21987	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding	0.120000	0.701493	
mm_20407.1	chr2	129299851	129300051	-	1	NA	NA	NA	2581	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.015000	0.447761	
mm_133564.1	chr16	91398918	91399118	+	1	NA	NA	NA	-7217	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.015000	0.288557	
mm_57819.1	chr6	129462669	129462869	-	1	NA	NA	NA	10010	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.427861	
mm_29085.1	chr3	104476606	104476806	-	1	NA	NA	NA	35212	NM_001310698	269473	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0.005000	0.383085	
mm_80141.1	chr9	70768710	70768910	+	1	NA	NA	NA	89828	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.015000	0.487562	
mm_60886.1	chr7	46396449	46396649	+	1	NA	NA	NA	81	NM_001112739	16502	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.180000	0.800995	
mm_152330.1	chr19	9954415	9954615	-	1	NA	NA	NA	-26085	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.020000	0.587065	
mm_120276.1	chr14	63129231	63129431	+	1	NA	NA	NA	6869	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.472637	-74(GGCTATTTAAGG,-,0.00)
mm_170995.1	chr2	75659189	75659389	+	1	NA	NA	NA	-1	NR_033513	627828	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	0.120000	0.681592	
mm_122519.1	chr14	47275252	47275452	-	1	NA	NA	NA	1505	NM_172598	218973	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	0.005000	0.308458	
mm_83614.1	chr9	48656415	48656615	-	1	NA	NA	NA	-51392	NM_010924	18113	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0.005000	0.517413	
mm_124703.1	chr15	6540202	6540402	+	1	NA	NA	NA	-39545	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.015000	0.492537	
mm_128397.1	chr15	43783883	43784083	-	1	NA	NA	NA	86046	NM_175502	239408	Mm.41219	NM_175502	ENSMUSG00000054409	Tmem74	AA549547|B230382K22Rik	transmembrane protein 74	protein-coding	0.000000	0.383085	
mm_156403.1	chrX	140062782	140062982	+	1	NA	NA	NA	3	NM_177921	331537	Mm.328336	NM_177921	ENSMUSG00000042433	Pih1h3b	E230019M04Rik	PIH1 domain containing 3B	protein-coding	0.045000	0.507463	-94(TTGTTTTAAAGG,-,0.00),-92(GTTTTAAAGGAG,+,0.00)
mm_8968.1	chr1	165219000	165219200	-	1	NA	NA	NA	17858	NM_145513	226591	Mm.21520	NM_145513	ENSMUSG00000040843	Tiprl	1810011K17Rik	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	protein-coding	0.005000	0.467662	
mm_63373.1	chr7	127208766	127208966	+	1	NA	NA	NA	-33	NM_001347655	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.030000	0.502488	
mm_130195.1	chr15	94579119	94579319	-	1	NA	NA	NA	10605	NM_008971	19230	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0.035000	0.537313	
mm_54667.1	chr6	39206707	39206907	-	1	NA	NA	NA	-34	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.220000	0.835821	
mm_29338.1	chr3	108210370	108210570	-	1	NA	NA	NA	57	NM_001289545	72522	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	0.145000	0.761194	
mm_31593.1	chr4	57872713	57872913	+	1	NA	NA	NA	18251	NM_001035533	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.005000	0.378109	
mm_145697.1	chr18	62548834	62549034	+	1	NA	NA	NA	23	NM_177829	328971	Mm.312675	NM_177829	ENSMUSG00000044176	Spink10	A230091H23Rik	serine peptidase inhibitor, Kazal type 10	protein-coding	0.060000	0.537313	
mm_2784.1	chr1	130844596	130844796	+	1	NA	NA	NA	18012	NM_011082	18703	Mm.276414	NM_011082	ENSMUSG00000026417	Pigr	-	polymeric immunoglobulin receptor	protein-coding	0.015000	0.467662	-94(AGCTATATAGGC,-,0.00),81(TGCTTTATAAAG,-,0.00),83(CTTTATAAAGAC,+,0.00)
mm_22668.1	chr3	14872144	14872344	+	1	NA	NA	NA	8706	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.010000	0.333333	
mm_84297.1	chr9	63377775	63377975	-	1	NA	NA	NA	-23	NM_011840	23938	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	0.140000	0.716418	
mm_41657.1	chr5	98854380	98854580	+	1	NA	NA	NA	65	NM_001310677	110075	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0.040000	0.606965	
mm_74699.1	chr8	16296995	16297195	-	1	NA	NA	NA	-128257	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0.005000	0.303483	
mm_37598.1	chr4	126744137	126744337	-	1	NA	NA	NA	-7968	NM_198960	332937	Mm.331881	NM_198960	ENSMUSG00000042477	Tfap2e	AI505200|AP-2e|Tcfap2e	transcription factor AP-2, epsilon	protein-coding	0.015000	0.557214	
mm_57048.1	chr6	122345012	122345212	-	1	NA	NA	NA	-4885	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.005000	0.462687	
mm_170335.1	chr18	45071211	45071411	-	1	NA	NA	NA	-197549	NM_001312905	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.035000	0.517413	
mm_138128.1	chr17	34187458	34187658	+	1	NA	NA	NA	2	NM_013683	21354	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.020000	0.572139	
mm_95382.1	chr11	49203192	49203392	+	1	NA	NA	NA	-208	NM_001024846	22720	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0.035000	0.532338	
mm_173195.1	chrX	62616939	62617139	+	1	NA	NA	NA	-90028	NR_045442	75545	Mm.391270	NR_045442	ENSMUSG00000085757	1700019B21Rik	-	RIKEN cDNA 1700019B21 gene	ncRNA	0.030000	0.447761	
mm_153039.1	chr19	32061258	32061458	-	1	NA	NA	NA	41782	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.005000	0.393035	
mm_28768.1	chr3	95904539	95904739	-	1	NA	NA	NA	0	NM_011797	23831	Mm.489647	NM_011797	ENSMUSG00000038526	Car14	AW536446|Ca14	carbonic anhydrase 14	protein-coding	0.035000	0.542289	-33(CACCTTAAAAGC,-,0.00),-31(CCTTAAAAGCGG,+,0.00)
mm_84786.1	chr9	76581568	76581768	-	1	NA	NA	NA	-35864	NM_001045518	208994	Mm.256929	NM_001045518	ENSMUSG00000032358	Fam83b	C530008M07Rik|Gm516	family with sequence similarity 83, member B	protein-coding	0.010000	0.497512	-34(GACCATATAAGG,-,0.00),-32(CCATATAAGGAC,+,0.00)
mm_27150.1	chr3	33081917	33082117	-	1	NA	NA	NA	1043	NM_021483	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.015000	0.457711	
mm_137402.1	chr17	25875414	25875614	+	1	NA	NA	NA	14	NM_026686	68347	Mm.35098	NM_026686	ENSMUSG00000025731	Mettl26	0610011F06Rik	methyltransferase like 26	protein-coding	0.080000	0.661692	
mm_125899.1	chr15	75940958	75941158	+	1	NA	NA	NA	106	NM_030199	78834	Mm.273264	NM_030199	ENSMUSG00000050846	Zfp623	2610029D06Rik|AI847036	zinc finger protein 623	protein-coding	0.120000	0.716418	
mm_122834.1	chr14	54723279	54723479	-	1	NA	NA	NA	-11205	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.010000	0.547264	
mm_125911.1	chr15	76016587	76016787	+	1	NA	NA	NA	-2351	NM_134087	105732	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	0.010000	0.442786	
mm_18704.1	chr2	71810086	71810286	-	1	NA	NA	NA	23247	NM_001277970	16403	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	0.040000	0.487562	-34(GAGTATAAATGG,-,0.00)
mm_116714.1	chr13	51568996	51569196	-	1	NA	NA	NA	-2012	NM_009167	20418	Mm.131870	NM_009167	ENSMUSG00000021448	Shc3	N-Shc|Rai|ShcC	src homology 2 domain-containing transforming protein C3	protein-coding	0.085000	0.681592	
mm_80700.1	chr9	92249562	92249762	+	1	NA	NA	NA	-532	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.025000	0.388060	
mm_171569.1	chr4	147310531	147310731	+	1	NA	NA	NA	134765	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.010000	0.552239	
mm_107457.1	chr12	37108567	37108767	+	1	NA	NA	NA	121	NM_008584	17286	Mm.341398	NM_008584	ENSMUSG00000036144	Meox2	AI528662|Gax|Mox-2|Mox2	mesenchyme homeobox 2	protein-coding	0.040000	0.527363	
mm_100341.1	chr11	118393431	118393631	+	1	NA	NA	NA	8400	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.020000	0.522388	
mm_37201.1	chr4	117871209	117871409	-	1	NA	NA	NA	1161	NM_001034876	381546	Mm.440118	NM_001034876	ENSMUSG00000078588	Ccdc24	Gm1028	coiled-coil domain containing 24	protein-coding	0.000000	0.472637	
mm_129231.1	chr15	76615836	76616036	-	1	NA	NA	NA	916	NM_028064	72027	Mm.276829	NM_028064	ENSMUSG00000063354	Slc39a4	1600025H15Rik|AU041686|AWMS2|ZIP4	solute carrier family 39 (zinc transporter), member 4	protein-coding	0.010000	0.577114	
mm_166465.1	chr5	142733821	142734021	-	1	NA	NA	NA	31820	NM_146257	243328	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.005000	0.457711	
mm_140812.1	chr17	22739815	22740015	-	1	NA	NA	NA	77832	NR_030709	100042679	Mm.484007	NR_030709		Gm16386	EG545191|ENSMUSG00000073442|Gm21017	zinc finger protein 946 pseudogene	pseudo	0.040000	0.482587	
mm_77865.1	chr9	5327187	5327387	+	1	NA	NA	NA	-18189	NM_009808	12364	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0.010000	0.427861	77(CTTTATATAGCA,+,0.00)
mm_54743.1	chr6	41031534	41031734	-	1	NA	NA	NA	3875	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.437811	
mm_24444.1	chr3	90605659	90605859	+	1	NA	NA	NA	1989	NM_011311	20198	Mm.3925	NM_011311	ENSMUSG00000001020	S100a4	18A2|42a|Capl|FSp1|Mts1|PeL98|metastasin|pk9a	S100 calcium binding protein A4	protein-coding	0.000000	0.472637	-25(TGCCAGAAAAGG,-,0.00)
mm_47986.1	chr5	135934463	135934663	-	1	NA	NA	NA	78	NM_018871	22628	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.110000	0.671642	
mm_141616.1	chr17	32830124	32830324	-	1	NA	NA	NA	37	NM_001293229	240064	Mm.476307	NM_177359	ENSMUSG00000095253	Zfp799	6030490I01Rik	zinc finger protein 799	protein-coding	0.055000	0.547264	
mm_5671.1	chr1	42713592	42713792	-	1	NA	NA	NA	-238	NR_110495	66620	Mm.383631	NR_110495	ENSMUSG00000097063	Pantr2	2610207O16Rik|Pou3f3os2|linc-Brn1b	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2	ncRNA	0.070000	0.597015	
mm_49796.1	chr6	35261288	35261488	+	1	NA	NA	NA	8656	NR_027875	67705	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	0.045000	0.567164	
mm_170199.1	chr17	67827723	67827923	-	1	NA	NA	NA	123117	NM_001347410	268970	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0.015000	0.507463	
mm_116221.1	chr13	32932327	32932527	-	1	NA	NA	NA	-33086	NM_011454	20708	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	0.005000	0.368159	
mm_50842.1	chr6	54816970	54817170	+	1	NA	NA	NA	154	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.190000	0.815920	
mm_108524.1	chr12	84100706	84100906	+	1	NA	NA	NA	152	NM_172580	217700	Mm.49245	NM_172580	ENSMUSG00000043487	Acot6	4632408A20Rik|A330054B07|BE688602	acyl-CoA thioesterase 6	protein-coding	0.040000	0.542289	
mm_71061.1	chr8	33914273	33914473	+	1	NA	NA	NA	15490	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.030000	0.592040	
mm_157048.1	chrX	8015725	8015925	-	1	NA	NA	NA	2667	NM_027227	69824	Mm.279756	NM_027227	ENSMUSG00000031163	Glod5	2010001H14Rik|AV061890	glyoxalase domain containing 5	protein-coding	0.020000	0.522388	81(TTCTTTAAAAAG,-,0.00),83(CTTTAAAAAGAG,+,0.00)
mm_29335.1	chr3	108154790	108154990	-	1	NA	NA	NA	42	NM_001305461	229714	Mm.73666	NM_175470	ENSMUSG00000046793	Gpr61	-	G protein-coupled receptor 61	protein-coding	0.015000	0.587065	
mm_145348.1	chr18	56471007	56471207	+	1	NA	NA	NA	38975	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.020000	0.482587	
mm_68981.1	chr7	126589304	126589504	-	1	NA	NA	NA	-3587	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.015000	0.616915	
mm_150621.1	chr19	41263261	41263461	+	1	NA	NA	NA	643	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.090000	0.611940	
mm_109056.1	chr12	104340446	104340646	+	1	NA	NA	NA	2060	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.000000	0.452736	
mm_97410.1	chr11	77953416	77953616	+	1	NA	NA	NA	22677	NM_021286	20370	Mm.229330	NM_021286	ENSMUSG00000000632	Sez6	BSRP-C|D11Bhm177e|sez-6	seizure related gene 6	protein-coding	0.050000	0.606965	
mm_101697.1	chr11	40751245	40751445	-	1	NA	NA	NA	3941	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.015000	0.348259	
mm_87281.1	chr10	42018089	42018289	+	1	NA	NA	NA	193	NM_001034858	213402	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.085000	0.656716	
mm_42923.1	chr5	122721536	122721736	+	1	NA	NA	NA	14092	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.005000	0.407960	
mm_130327.1	chr15	97705715	97705915	-	1	NA	NA	NA	7	NM_028003	71919	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.125000	0.706468	
mm_118261.1	chr13	112463773	112463973	-	1	NA	NA	NA	-197	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.095000	0.646766	
mm_76147.1	chr8	82340633	82340833	-	1	NA	NA	NA	61853	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.000000	0.363184	
mm_65560.1	chr7	27166618	27166818	-	1	NA	NA	NA	84	NM_053208	112406	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0.150000	0.766169	
mm_109725.1	chr12	116281174	116281374	+	1	NA	NA	NA	52	NM_028731	52635	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	0.120000	0.751244	
mm_69029.1	chr7	126797333	126797533	-	1	NA	NA	NA	1745	NM_001177307	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.040000	0.567164	
mm_95742.1	chr11	54694531	54694731	+	1	NA	NA	NA	93072	NM_178626	72729	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.010000	0.373134	
mm_18579.1	chr2	66124749	66124949	-	1	NA	NA	NA	-56	NM_015736	14425	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.170000	0.820896	
mm_106639.1	chr11	120991005	120991205	-	1	NA	NA	NA	228	NM_139059	104318	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0.145000	0.741294	
mm_136733.1	chr17	8310988	8311188	+	1	NA	NA	NA	-15	NM_134114	106489	Mm.311080	NM_134114	ENSMUSG00000073468	Sft2d1	5630401J11Rik|AA409698	SFT2 domain containing 1	protein-coding	0.100000	0.646766	
mm_126523.1	chr15	81936790	81936990	+	1	NA	NA	NA	131	NM_145473	105859	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	0.040000	0.611940	
mm_52147.1	chr6	97978709	97978909	+	1	NA	NA	NA	-12974	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.417910	
mm_29892.1	chr3	131272730	131272930	-	1	NA	NA	NA	-729	NM_008212	15107	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.010000	0.437811	-34(CTTTTTATAGCT,+,0.00)
mm_51595.1	chr6	83978191	83978391	+	1	NA	NA	NA	-30307	NM_001077694	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.000000	0.368159	
mm_168206.1	chr10	70841323	70841523	+	1	NA	NA	NA	-185460	NR_045292	319646	Mm.483039	NR_045291	ENSMUSG00000037747	D630013N20Rik	-	RIKEN cDNA D630013N20 gene	ncRNA	0.005000	0.442786	
mm_125076.1	chr15	25984324	25984524	+	1	NA	NA	NA	58	NM_144523	52521	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.050000	0.582090	
mm_84049.1	chr9	58102215	58102415	-	1	NA	NA	NA	-18	NM_001311085	382077	Mm.335193	NM_029212	ENSMUSG00000037716	Ccdc33	4930535E21Rik|Gm1117|Tzip1	coiled-coil domain containing 33	protein-coding	0.015000	0.527363	
mm_132499.1	chr16	36949283	36949483	+	1	NA	NA	NA	14400	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.010000	0.482587	
mm_49617.1	chr6	30751600	30751800	+	1	NA	NA	NA	10401	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.363184	
mm_66832.1	chr7	48847932	48848132	-	1	NA	NA	NA	19	NM_001198841	13009	Mm.17235	NM_013808	ENSMUSG00000030470	Csrp3	CRP3|MLP|MMLP	cysteine and glycine-rich protein 3	protein-coding	0.015000	0.552239	
mm_158321.1	chrX	133688951	133689151	-	1	NA	NA	NA	-58	NM_001105246	279653	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding	0.085000	0.721393	
mm_27173.1	chr3	34005402	34005602	-	1	NA	NA	NA	-14577	NM_001113189	14359	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0.030000	0.492537	
mm_105376.1	chr11	103265194	103265394	-	1	NA	NA	NA	2107	NM_016896	53859	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.035000	0.542289	
mm_166807.1	chr7	6343646	6343846	+	1	NA	NA	NA	-13312	NM_001033249	213011	Mm.333558	NM_001033249	ENSMUSG00000030443	Zfp583	BC056221|Znf583	zinc finger protein 583	protein-coding	0.045000	0.577114	
mm_170317.1	chr18	37655844	37656044	+	1	NA	NA	NA	-6001	NM_033584	93709	Mm.247203	NM_033584	ENSMUSG00000103144	Pcdhga1	-	protocadherin gamma subfamily A, 1	protein-coding	0.055000	0.557214	
mm_162550.1	chr1	171219035	171219235	+	1	NA	NA	NA	-2429	NM_001305585	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.005000	0.417910	
mm_88135.1	chr10	69398811	69399011	+	1	NA	NA	NA	-45999	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.110000	0.761194	
mm_21086.1	chr2	153015265	153015465	-	1	NA	NA	NA	18	NM_178939	68559	Mm.12746	NM_178939	ENSMUSG00000027472	Pdrg1	1110004D19Rik|AU020945|AV006589|Pdrg	p53 and DNA damage regulated 1	protein-coding	0.085000	0.646766	
mm_150434.1	chr19	37536897	37537097	+	1	NA	NA	NA	-13421	NM_175353	107371	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0.010000	0.338308	
mm_95555.1	chr11	52310894	52311094	+	1	NA	NA	NA	-27980	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.030000	0.552239	
mm_25629.1	chr3	119084942	119085142	+	1	NA	NA	NA	522864	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.000000	0.253731	
mm_136155.1	chr16	87902178	87902378	-	1	NA	NA	NA	203324	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.005000	0.452736	
mm_43098.1	chr5	124475429	124475629	+	1	NA	NA	NA	2706	NM_030259	80291	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.020000	0.557214	
mm_149188.1	chr19	9914483	9914683	+	1	NA	NA	NA	-15050	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.005000	0.472637	
mm_96453.1	chr11	67571141	67571341	+	1	NA	NA	NA	-15259	NM_001109657	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.030000	0.447761	
mm_4708.1	chr1	180934939	180935139	+	1	NA	NA	NA	17	NM_010094	13590	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	0.020000	0.601990	
mm_40150.1	chr5	35388869	35389069	+	1	NA	NA	NA	-148	NM_010445	15371	Mm.358606	NM_010445	ENSMUSG00000067438	Hmx1	Nkx5-3	H6 homeobox 1	protein-coding	0.135000	0.766169	
mm_159359.1	chr3	85746120	85746320	-	1	NA	NA	NA	-11	NM_172682	229488	Mm.119926	NM_172682	ENSMUSG00000051000	Fam160a1	9930021J17Rik	family with sequence similarity 160, member A1	protein-coding	0.000000	0.422886	
mm_82516.1	chr9	20636275	20636475	-	1	NA	NA	NA	6431	NM_013911	30843	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding	0.005000	0.537313	
mm_37471.1	chr4	123564555	123564755	-	1	NA	NA	NA	-51765	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.010000	0.522388	
mm_167565.1	chr9	41876101	41876301	-	1	NA	NA	NA	248088	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.025000	0.497512	
mm_99140.1	chr11	100376217	100376417	+	1	NA	NA	NA	-20176	NM_010404	15114	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.015000	0.492537	
mm_96128.1	chr11	60786042	60786242	+	1	NA	NA	NA	8617	NM_175491	237782	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	0.000000	0.398010	
mm_27816.1	chr3	78647091	78647291	-	1	NA	NA	NA	497696	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.412935	
mm_134279.1	chr16	14195042	14195242	-	1	NA	NA	NA	31867	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.020000	0.427861	
mm_106591.1	chr11	120730358	120730558	-	1	NA	NA	NA	1563	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.020000	0.502488	
mm_84000.1	chr9	57552185	57552385	-	1	NA	NA	NA	467	NM_025837	110119	Mm.247218	NM_025837	ENSMUSG00000032306	Mpi	1110002E17Rik|AI315153|Mpi-1|Mpi1	mannose phosphate isomerase	protein-coding	0.005000	0.562189	
mm_158305.1	chrX	122397218	122397418	-	1	NA	NA	NA	67	NM_138742	54561	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	0.065000	0.656716	
mm_136170.1	chr16	88612176	88612376	-	1	NA	NA	NA	3	NM_001163141	239932	Mm.120273	NM_001163141	ENSMUSG00000050239	Krtap24-1	Gm312	keratin associated protein 24-1	protein-coding	0.025000	0.487562	
mm_79898.1	chr9	65360935	65361135	+	1	NA	NA	NA	-25	NM_001111145	208080	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	0.020000	0.422886	
mm_88656.1	chr10	79996365	79996565	+	1	NA	NA	NA	-1143	NM_001347081	27403	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.090000	0.651741	49(CCACTTAAAGGG,+,0.00)
mm_94758.1	chr11	21148971	21149171	+	1	NA	NA	NA	57747	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.000000	0.407960	78(TTGTCTAAAAGG,-,0.00)
mm_166412.1	chr5	137151356	137151556	+	1	NA	NA	NA	-35249	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.482587	
mm_130891.1	chr15	102366177	102366377	-	1	NA	NA	NA	-6	NM_130458	170574	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	0.020000	0.567164	
mm_59075.1	chr7	19517623	19517823	+	1	NA	NA	NA	-1008	NM_027116	69547	Mm.77325	NM_027116	ENSMUSG00000060621	Nkpd1	2310015G09Rik	NTPase, KAP family P-loop domain containing 1	protein-coding	0.015000	0.557214	
mm_25894.1	chr3	131110577	131110777	+	1	NA	NA	NA	380	NM_001276402	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.055000	0.562189	
mm_55081.1	chr6	49214610	49214810	-	1	NA	NA	NA	244	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.055000	0.552239	
mm_26116.1	chr3	137833822	137834022	+	1	NA	NA	NA	-30565	NM_001316995	51788	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0.010000	0.437811	-30(TAGTTTAAAAAG,-,0.00)
mm_44523.1	chr5	24391922	24392122	-	1	NA	NA	NA	121	NM_001002897	213948	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0.010000	0.577114	
mm_170377.1	chr1	85598654	85598854	-	1	NA	NA	NA	56	NM_030194	109032	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|ENSMUSG00000075603|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.025000	0.547264	
mm_25731.1	chr3	122834472	122834672	+	1	NA	NA	NA	-32592	NR_045168	71647	Mm.449992	NR_045168	ENSMUSG00000106583	4930447N08Rik	-	RIKEN cDNA 4930447N08 gene	ncRNA	0.025000	0.452736	-21(GTCTCTTAAAGA,-,0.00)
mm_71634.1	chr8	57487959	57488159	+	1	NA	NA	NA	96	NR_126555	78353	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	0.060000	0.522388	
mm_96600.1	chr11	69090961	69091161	+	1	NA	NA	NA	2533	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.005000	0.507463	
mm_142379.1	chr17	44736221	44736421	-	1	NA	NA	NA	-145	NM_001271631	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.100000	0.681592	
mm_5086.1	chr1	4496335	4496535	-	1	NA	NA	NA	919	NM_001289464	20671	Mm.279103	NM_011441	ENSMUSG00000025902	Sox17	-	SRY (sex determining region Y)-box 17	protein-coding	0.035000	0.522388	
mm_56050.1	chr6	86743090	86743290	-	1	NA	NA	NA	-9812	NM_011818	23885	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	0.030000	0.442786	55(CTTTATAAATCC,+,0.00)
mm_41459.1	chr5	90930666	90930866	+	1	NA	NA	NA	-430	NM_026788	665563	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	0.005000	0.442786	
mm_168799.1	chr12	20071529	20071729	+	1	NA	NA	NA	744150	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.105000	0.756219	
mm_71679.1	chr8	60890347	60890547	+	1	NA	NA	NA	-4	NM_028299	72612	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.125000	0.716418	
mm_85948.1	chr9	112113686	112113886	-	1	NA	NA	NA	4925	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.000000	0.427861	
mm_56375.1	chr6	94229012	94229212	-	1	NA	NA	NA	8330	NR_130996	78178	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0.005000	0.343284	
mm_59175.1	chr7	24450690	24450890	+	1	NA	NA	NA	-5108	NM_199013	210145	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.015000	0.512438	
mm_142580.1	chr17	46681819	46682019	-	1	NA	NA	NA	739	NM_001277312	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.010000	0.512438	
mm_94985.1	chr11	31832612	31832812	+	1	NA	NA	NA	-8165	NR_102312	414116	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.005000	0.497512	
mm_6668.1	chr1	80340249	80340449	-	1	NA	NA	NA	341	NM_001313728	26554	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.145000	0.761194	
mm_40194.1	chr5	36796407	36796607	+	1	NA	NA	NA	247	NM_026242	67568	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0.140000	0.706468	
mm_18655.1	chr2	69789476	69789676	-	1	NA	NA	NA	-90	NM_001077684	75051	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding	0.075000	0.587065	
mm_89226.1	chr10	87518834	87519034	+	1	NA	NA	NA	-2861	NM_008777	18478	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0.010000	0.462687	
mm_74050.1	chr8	122230161	122230361	+	1	NA	NA	NA	-51880	NM_009569	22761	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.180000	0.830846	
mm_92466.1	chr10	77990130	77990330	-	1	NA	NA	NA	11580	NM_026431	67884	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0.035000	0.562189	
mm_14557.1	chr2	134786062	134786262	+	1	NA	NA	NA	-2	NM_019677	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding	0.110000	0.726368	
mm_117225.1	chr13	64153037	64153237	-	1	NA	NA	NA	62	NM_175494	238673	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	0.140000	0.686567	
mm_99556.1	chr11	103649444	103649644	+	1	NA	NA	NA	35	NM_001033212	104582	Mm.44618	NM_001033212	ENSMUSG00000046215	Rprml	AW049332	reprimo-like	protein-coding	0.115000	0.731343	
mm_47914.1	chr5	134966409	134966609	-	1	NA	NA	NA	-19575	NM_009903	12740	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	0.030000	0.547264	-65(GTCTTTTAAGGG,-,0.00),-64(TCTTTTAAGGGG,+,0.00)
mm_169429.1	chr14	53709795	53709995	+	1	NA	NA	NA	544034	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.417910	
mm_1004.1	chr1	58717360	58717560	+	1	NA	NA	NA	4174	NM_207653	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.010000	0.417910	
mm_60166.1	chr7	40898663	40898863	+	1	NA	NA	NA	-439	NR_040329	320210	Mm.126237	NR_040329	ENSMUSG00000100600	A230077H06Rik	-	RIKEN cDNA A230077H06 gene	ncRNA	0.110000	0.741294	
mm_59602.1	chr7	28140065	28140265	+	1	NA	NA	NA	10699	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.045000	0.502488	
mm_151496.1	chr19	58707530	58707730	+	1	NA	NA	NA	8713	NR_038140	69166	Mm.491059	NR_038140	ENSMUSG00000101088	1810018F18Rik	1810031L05Rik|1810047O18Rik	RIKEN cDNA 1810018F18 gene	ncRNA	0.005000	0.353234	
mm_113725.1	chr13	43797509	43797709	+	1	NA	NA	NA	12497	NM_001289915	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.040000	0.606965	
mm_44100.1	chr5	149289231	149289431	+	1	NA	NA	NA	24327	NM_009663	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.000000	0.412935	
mm_110995.1	chr12	78256412	78256612	-	1	NA	NA	NA	29857	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.015000	0.393035	
mm_156814.1	chrX	164118234	164118434	+	1	NA	NA	NA	-21008	NM_001130513	70008	Mm.13451	NM_027286	ENSMUSG00000015405	Ace2	2010305L05Rik	angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	protein-coding	0.005000	0.402985	
mm_146969.1	chr18	33463523	33463723	-	1	NA	NA	NA	11	NM_001267717	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.030000	0.537313	
mm_147318.1	chr18	42196619	42196819	-	1	NA	NA	NA	-10	NM_027072	69401	Mm.34841	NM_027072	ENSMUSG00000059455	Plac8l1	1700009N18Rik|1700015M15Rik	PLAC8-like 1	protein-coding	0.000000	0.432836	-77(GTCTTTAAAAAA,-,0.00),-9(CTGTTTAAAGGC,-,0.00)
mm_76178.1	chr8	82401545	82401745	-	1	NA	NA	NA	941	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.015000	0.422886	
mm_161772.1	chr17	37093840	37094040	-	1	NA	NA	NA	-68	NM_182714	258470	Mm.377519	NM_182714	ENSMUSG00000095377	Olfr91	MOR256-20|bM573K1.3	olfactory receptor 91	protein-coding	0.020000	0.507463	
mm_90730.1	chr10	5289284	5289484	-	1	NA	NA	NA	-94677	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.030000	0.597015	
mm_147152.1	chr18	36679055	36679255	-	1	NA	NA	NA	-60	NM_001083317	67843	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	0.100000	0.691542	
mm_161015.1	chr11	120274440	120274640	+	1	NA	NA	NA	41593	NM_198423	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.020000	0.621891	
mm_10394.1	chr2	13573917	13574117	+	1	NA	NA	NA	-294	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.045000	0.601990	
mm_142863.1	chr17	51813811	51814011	-	1	NA	NA	NA	-1857	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.025000	0.427861	
mm_28901.1	chr3	98318935	98319135	-	1	NA	NA	NA	20934	NM_016966	236539	Mm.16898	NM_016966	ENSMUSG00000053398	Phgdh	3-PGDH|3PGDH|4930479N23|A10|PGAD|PGD|PGDH|SERA	3-phosphoglycerate dehydrogenase	protein-coding	0.000000	0.447761	
mm_46893.1	chr5	113993673	113993873	-	1	NA	NA	NA	-16	NM_198109	231637	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot homolog 1 (Drosophila)	protein-coding	0.120000	0.786070	
mm_38327.1	chr4	137357617	137357817	-	1	NA	NA	NA	42	NM_009861	12540	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.100000	0.726368	
mm_27782.1	chr3	73708311	73708511	-	1	NA	NA	NA	4	NM_009738	12038	Mm.250719	NM_009738	ENSMUSG00000027792	Bche	C730038G20Rik	butyrylcholinesterase	protein-coding	0.030000	0.522388	
mm_24461.1	chr3	90653988	90654188	+	1	NA	NA	NA	-214	NM_199422	381493	Mm.291525	NM_199422	ENSMUSG00000063767	S100a7a	AY465109|Gm1020|S100A7L1|S100A7f|S100a15|S100a15a|S100a17l1	S100 calcium binding protein A7A	protein-coding	0.010000	0.507463	
mm_121638.1	chr14	8378679	8378879	-	1	NA	NA	NA	-16	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.010000	0.597015	
mm_96888.1	chr11	70436084	70436284	+	1	NA	NA	NA	-2071	NR_106064	102465670		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.015000	0.557214	
mm_87774.1	chr10	60294514	60294714	+	1	NA	NA	NA	10153	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.572139	
mm_14196.1	chr2	127134984	127135184	+	1	NA	NA	NA	-1130	NM_144818	215387	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|HCAP-H|mKIAA0074	non-SMC condensin I complex, subunit H	protein-coding	0.005000	0.303483	
mm_100462.1	chr11	119856189	119856389	+	1	NA	NA	NA	-21924	NR_045312	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	0.015000	0.512438	
mm_44328.1	chr5	12355676	12355876	-	1	NA	NA	NA	-27390	NM_028882	108151	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.005000	0.462687	-35(GCCTATATAAGA,-,0.00)
mm_26722.1	chr3	159599084	159599284	+	1	NA	NA	NA	3	NM_029987	19892	Mm.131708	NM_029987	ENSMUSG00000028174	Rpe65	65kDa|A930029L06Rik|LCA2|Mord1|RP20|rd12	retinal pigment epithelium 65	protein-coding	0.005000	0.462687	
mm_16054.1	chr2	167773086	167773286	+	1	NA	NA	NA	82009	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.020000	0.487562	
mm_28097.1	chr3	86002425	86002625	-	1	NA	NA	NA	-34	NM_001001650	368202	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding	0.050000	0.631841	
mm_5444.1	chr1	36017164	36017364	-	1	NA	NA	NA	-51136	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.010000	0.517413	
mm_89875.1	chr10	108285133	108285333	+	1	NA	NA	NA	-46956	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.010000	0.432836	
mm_78172.1	chr9	21131410	21131610	+	1	NA	NA	NA	-235	NM_001205312	54721	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.065000	0.626866	
mm_50380.1	chr6	48685408	48685608	+	1	NA	NA	NA	930	NM_174990	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.000000	0.462687	-33(AGGCATAAAAAG,-,0.00),-31(GCATAAAAAGCC,+,0.00)
mm_106651.1	chr11	121081037	121081237	-	1	NA	NA	NA	2	NM_145373	209588	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	0.010000	0.577114	
mm_164080.1	chr15	3279159	3279359	+	1	NA	NA	NA	8282	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.010000	0.572139	
mm_85544.1	chr9	106682262	106682462	-	1	NA	NA	NA	3454	NM_011573	21767	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.000000	0.477612	
mm_85326.1	chr9	101862403	101862603	-	1	NA	NA	NA	442472	NR_106163	102466241		NR_106163	ENSMUSG00000098521	Mir7243	Gm27363|mmu-mir-7243	microRNA 7243	ncRNA	0.015000	0.522388	
mm_87552.1	chr10	54074455	54074655	+	1	NA	NA	NA	1241	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.050000	0.616915	
mm_47561.1	chr5	124425488	124425688	-	1	NA	NA	NA	326	NM_001081203	243272	Mm.23879	NM_001081203	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch homolog 1 (Drosophila)	protein-coding	0.155000	0.771144	
mm_172928.1	chr9	72293265	72293465	-	1	NA	NA	NA	18477	NM_001311105	235469	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	0.025000	0.502488	
mm_25240.1	chr3	103914288	103914488	+	1	NA	NA	NA	268	NM_172684	229675	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0.080000	0.611940	
mm_52483.1	chr6	114316555	114316755	+	1	NA	NA	NA	34020	NM_178703	232333	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.010000	0.427861	
mm_66412.1	chr7	44491901	44492101	-	1	NA	NA	NA	4512	NM_197991	69683	Mm.294759	NM_197991	ENSMUSG00000008140	Emc10	2310044H10Rik|5430410O10Rik|Inm02|Mirta22	ER membrane protein complex subunit 10	protein-coding	0.015000	0.606965	
mm_141634.1	chr17	32965612	32965812	-	1	NA	NA	NA	4	NR_033585	77875	Mm.245027	NR_033585		Cyp4f41-ps	6030422M01Rik	cytochrome P450, family 4, subfamily f, polypeptide 41 pseudogene	pseudo	0.035000	0.497512	
mm_70423.1	chr8	11476910	11477110	+	1	NA	NA	NA	-919	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.030000	0.507463	
mm_50324.1	chr6	48395525	48395725	+	1	NA	NA	NA	39	NM_001347153	77827	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	0.090000	0.681592	
mm_27763.1	chr3	69858772	69858972	-	1	NA	NA	NA	1022	NM_001164210	66183	Mm.45481	NM_133675	ENSMUSG00000043461	Sptssb	1110032A04Rik|ADMP|Sssptb	serine palmitoyltransferase, small subunit B	protein-coding	0.005000	0.502488	
mm_15870.1	chr2	164834023	164834223	+	1	NA	NA	NA	350	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.060000	0.616915	
mm_135672.1	chr16	52411669	52411869	-	1	NA	NA	NA	41312	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.368159	
mm_132801.1	chr16	45094546	45094746	+	1	NA	NA	NA	593	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.015000	0.507463	
mm_32775.1	chr4	116699321	116699521	+	1	NA	NA	NA	8964	NM_025962	67096	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0.005000	0.388060	
mm_95877.1	chr11	58060905	58061105	+	1	NA	NA	NA	-43148	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.000000	0.572139	
mm_110558.1	chr12	55491658	55491858	-	1	NA	NA	NA	889	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.035000	0.626866	
mm_46535.1	chr5	105700582	105700782	-	1	NA	NA	NA	-128	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.110000	0.771144	
mm_110036.1	chr12	17000015	17000215	-	1	NA	NA	NA	3	NM_172574	217430	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	0.095000	0.686567	
mm_45572.1	chr5	73338889	73339089	-	1	NA	NA	NA	-42	NM_001310636	433904	Mm.274892	NM_026950	ENSMUSG00000029153	Ociad2	1810027I20Rik	OCIA domain containing 2	protein-coding	0.055000	0.537313	-82(TCATTTATAGTC,+,0.00)
mm_134593.1	chr16	20454271	20454471	-	1	NA	NA	NA	-27977	NM_176839	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.005000	0.457711	
mm_128945.1	chr15	74746596	74746796	-	1	NA	NA	NA	-9	NM_001081961	69462	Mm.64338	NM_001081961	ENSMUSG00000075605	Slurp2	2300005B03Rik|SLURP-2	secreted Ly6/Plaur domain containing 2	protein-coding	0.020000	0.577114	
mm_74924.1	chr8	25597388	25597588	-	1	NA	NA	NA	-1	NM_173012	270035	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	0.065000	0.626866	
mm_15436.1	chr2	157278998	157279198	+	1	NA	NA	NA	0	NM_019642	20014	Mm.22130	NM_019642	ENSMUSG00000027642	Rpn2	1300012C06Rik|AV261018|Rpn-2	ribophorin II	protein-coding	0.120000	0.726368	
mm_750.1	chr1	43730513	43730713	+	1	NA	NA	NA	11	NM_024283	78896	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	0.040000	0.636816	
mm_13962.1	chr2	121413868	121414068	+	1	NA	NA	NA	66	NM_007952	14827	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	0.115000	0.726368	
mm_38361.1	chr4	137994636	137994836	-	1	NA	NA	NA	1280	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.020000	0.398010	
mm_112977.1	chr13	21295421	21295621	+	1	NA	NA	NA	-2835	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.015000	0.567164	
mm_22364.1	chr2	181043447	181043647	-	1	NA	NA	NA	-4370	NM_015730	11438	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	0.010000	0.562189	
mm_141826.1	chr17	34627018	34627218	-	1	NA	NA	NA	30	NM_019441	54397	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	0.040000	0.582090	
mm_30063.1	chr3	137878029	137878229	-	1	NA	NA	NA	10454	NM_001033155	70604	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	0.000000	0.398010	
mm_86007.1	chr9	112233180	112233380	-	1	NA	NA	NA	-779	NM_001177616	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.000000	0.388060	
mm_40395.1	chr5	52810118	52810318	+	1	NA	NA	NA	-23917	NM_024213	52206	Mm.272568	NM_024213	ENSMUSG00000029176	Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding	0.020000	0.412935	
mm_16689.1	chr2	6884804	6885004	-	1	NA	NA	NA	92	NM_010160	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.025000	0.437811	42(CTGCTTTTAAGG,-,0.00),44(GCTTTTAAGGTA,+,0.00)
mm_461.1	chr1	36307677	36307877	+	1	NA	NA	NA	44	NM_001172205	214855	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.130000	0.756219	
mm_130507.1	chr15	98845636	98845836	-	1	NA	NA	NA	-14228	NM_016781	19082	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.005000	0.601990	
mm_103059.1	chr11	69837001	69837201	-	1	NA	NA	NA	-1424	NM_026982	69186	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	0.090000	0.766169	
mm_113337.1	chr13	31625708	31625908	+	1	NA	NA	NA	-8	NM_010225	14238	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	0.120000	0.711443	
mm_144659.1	chr18	34313067	34313267	+	1	NA	NA	NA	-17978	NM_025527	66384	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	0.005000	0.402985	
mm_141645.1	chr17	33607656	33607856	-	1	NA	NA	NA	-21336	NR_034153	328801	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	0.010000	0.442786	
mm_71582.1	chr8	54600721	54600921	+	1	NA	NA	NA	40	NM_133711	69281	Mm.45833	NM_133711	ENSMUSG00000031518	Spata4	1700001N01Rik|Srg2|TSARG2	spermatogenesis associated 4	protein-coding	0.045000	0.552239	
mm_26572.1	chr3	146602555	146602755	+	1	NA	NA	NA	5506	NM_009474	22262	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.000000	0.383085	
mm_34191.1	chr4	140701809	140702009	+	1	NA	NA	NA	436	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.085000	0.567164	
mm_47576.1	chr5	124531199	124531399	-	1	NA	NA	NA	92	NM_021430	75695	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0.115000	0.716418	
mm_153075.1	chr19	32276833	32277033	-	1	NA	NA	NA	-65920	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.010000	0.482587	
mm_72314.1	chr8	78013901	78014101	+	1	NA	NA	NA	-199341	NM_183096	73301	Mm.61243	NM_183096	ENSMUSG00000037101	Ttc29	1700031F13Rik	tetratricopeptide repeat domain 29	protein-coding	0.005000	0.522388	
mm_100161.1	chr11	116433973	116434173	+	1	NA	NA	NA	-21	NM_176902	319370	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	0.130000	0.721393	
mm_133390.1	chr16	84774086	84774286	+	1	NA	NA	NA	63	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.070000	0.651741	
mm_15471.1	chr2	157471137	157471337	+	1	NA	NA	NA	46944	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.015000	0.562189	
mm_152618.1	chr19	12435953	12436153	-	1	NA	NA	NA	8148	NM_019540	56093	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.005000	0.477612	
mm_89706.1	chr10	97649722	97649922	+	1	NA	NA	NA	5754	NM_007884	13516	Mm.148886	NM_007884	ENSMUSG00000019936	Epyc	Dspg3|PG-Lb|SLRR3B	epiphycan	protein-coding	0.005000	0.402985	2(CCTTTTATAACT,+,0.00),65(GCTTTTAAATGC,+,0.00),65(GCTTTTAAATGC,-,0.00)
mm_65743.1	chr7	28543892	28544092	-	1	NA	NA	NA	3107	NM_026716	68416	Mm.25210	NM_026716	ENSMUSG00000084174	Sycn	0910001K16Rik|1810038B08Rik|SYL	syncollin	protein-coding	0.010000	0.547264	
mm_15065.1	chr2	153031900	153032100	+	1	NA	NA	NA	148	NM_001011732	228787	Mm.376111	NM_001011732	ENSMUSG00000042631	Xkr7	AY534253	X-linked Kx blood group related 7	protein-coding	0.145000	0.800995	
mm_139625.1	chr17	57363211	57363411	+	1	NA	NA	NA	4625	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.010000	0.378109	
mm_125053.1	chr15	25843258	25843458	+	1	NA	NA	NA	60	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.130000	0.766169	
mm_169084.1	chr13	35853421	35853621	+	1	NA	NA	NA	52826	NM_145938	208366	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	0.005000	0.462687	
mm_160613.1	chr9	87015458	87015658	+	1	NA	NA	NA	21	NM_001037907	382089	Mm.92244	NM_001037907	ENSMUSG00000047897	Ripply2	C030002E08Rik|Gm1122	ripply transcriptional repressor 2	protein-coding	0.135000	0.701493	-57(GGCTAGATAAAG,-,0.00)
mm_152255.1	chr19	8756806	8757006	-	1	NA	NA	NA	63	NR_132423	102640359	Mm.440831	NR_132423		LOC102640359	-	uncharacterized LOC102640359	ncRNA	0.085000	0.666667	
mm_73947.1	chr8	120120047	120120247	+	1	NA	NA	NA	5995	NM_001163761	234797	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.020000	0.442786	
mm_68779.1	chr7	122186082	122186282	-	1	NA	NA	NA	49	NM_012016	26918	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	0.050000	0.651741	
mm_65318.1	chr7	24902736	24902936	-	1	NA	NA	NA	-150	NM_001130150	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.090000	0.686567	
mm_48215.1	chr5	137610539	137610739	-	1	NA	NA	NA	765	NM_008788	18542	Mm.262345	NM_008788	ENSMUSG00000029718	Pcolce	Astt-2|Astt2|P14|PCPE-1	procollagen C-endopeptidase enhancer protein	protein-coding	0.035000	0.597015	
mm_89565.1	chr10	95416888	95417088	+	1	NA	NA	NA	-131	NM_007706	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.095000	0.696517	-35(GCGCTTTAAAGA,-,0.00),-34(CGCTTTAAAGAG,-,0.00),-32(CTTTAAAGAGGC,+,0.00)
mm_138664.1	chr17	35873791	35873991	+	1	NA	NA	NA	-5887	NM_026987	69192	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	0.045000	0.666667	
mm_129539.1	chr15	79357618	79357818	-	1	NA	NA	NA	9316	NM_001304832	17133	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.160000	0.736318	
mm_31499.1	chr4	53246122	53246322	+	1	NA	NA	NA	26	NR_040665	78180	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.030000	0.477612	
mm_128361.1	chr15	41329575	41329775	-	1	NA	NA	NA	-117807	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.005000	0.393035	-34(GAATATAAATGG,-,0.00)
mm_171431.1	chr4	136050218	136050418	-	1	NA	NA	NA	3053	NM_025919	67025	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	0.025000	0.577114	
mm_159896.1	chr6	30958740	30958940	-	1	NA	NA	NA	150	NM_001135093	619665	Mm.204671	NM_001135093	ENSMUSG00000073209	Klf14	5330411L03Rik|AL022736|BTEB5	Kruppel-like factor 14	protein-coding	0.155000	0.796020	
mm_17676.1	chr2	32259986	32260186	-	1	NA	NA	NA	19	NM_011675	22245	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	0.110000	0.641791	
mm_50401.1	chr6	48720378	48720578	+	1	NA	NA	NA	1857	NM_146167	231932	Mm.30479	NM_146167	ENSMUSG00000043931	Gimap7	IAN7|Ian3	GTPase, IMAP family member 7	protein-coding	0.010000	0.487562	
mm_80825.1	chr9	96786221	96786421	+	1	NA	NA	NA	20759	NR_102296	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	0.010000	0.537313	
mm_126114.1	chr15	78260815	78261015	+	1	NA	NA	NA	16104	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.020000	0.567164	
mm_27858.1	chr3	79157518	79157718	-	1	NA	NA	NA	-11743	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.348259	
mm_66863.1	chr7	56019482	56019682	-	1	NA	NA	NA	-9	NM_153578	233280	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	0.185000	0.825871	
mm_55328.1	chr6	55681164	55681364	-	1	NA	NA	NA	-1	NM_009717	11922	Mm.5106	NM_009717	ENSMUSG00000037984	Neurod6	Atoh2|Math-2|Math2|Nex|Nex1m|bHLHa2	neurogenic differentiation 6	protein-coding	0.005000	0.467662	
mm_94015.1	chr10	127661320	127661520	-	1	NA	NA	NA	5283	NM_001122895	17937	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0.015000	0.582090	
mm_118015.1	chr13	100775723	100775923	-	1	NA	NA	NA	76	NM_021886	26886	Mm.273502	NM_021886	ENSMUSG00000045273	Cenph	1700021I11Rik|2410018A12Rik|2610042E16Rik|2810046K12Rik|AU044255|CENP-H|ENP	centromere protein H	protein-coding	0.080000	0.636816	
mm_146179.1	chr18	75370477	75370677	+	1	NA	NA	NA	3212	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.100000	0.751244	
mm_74802.1	chr8	22585997	22586197	-	1	NA	NA	NA	7716	NM_001198998	22335	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	0.005000	0.402985	
mm_139682.1	chr17	57416516	57416716	+	1	NA	NA	NA	57930	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.298507	
mm_111683.1	chr12	103416133	103416333	-	1	NA	NA	NA	9547	NM_001159502	27225	Mm.3935	NM_020494	ENSMUSG00000041645	Ddx24	1700055J08Rik|2510027P10Rik|AI649272	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	protein-coding	0.015000	0.427861	
mm_45931.1	chr5	89457674	89457874	-	1	NA	NA	NA	124	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.020000	0.507463	
mm_75806.1	chr8	70212184	70212384	-	1	NA	NA	NA	-3	NM_001007570	73095	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	0.120000	0.736318	
mm_30468.1	chr3	154330233	154330433	-	1	NA	NA	NA	227	NM_010713	16875	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.065000	0.611940	
mm_132410.1	chr16	35025526	35025726	+	1	NA	NA	NA	3205	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.015000	0.517413	
mm_60999.1	chr7	49304000	49304200	+	1	NA	NA	NA	57911	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.040000	0.661692	
mm_58370.1	chr6	148944664	148944864	-	1	NA	NA	NA	-93	NR_144294	109163	Mm.440359	NM_175404		3010003L21Rik	-	RIKEN cDNA 3010003L21 gene	ncRNA	0.130000	0.736318	
mm_148190.1	chr18	79009540	79009740	-	1	NA	NA	NA	99751	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.010000	0.432836	
mm_122326.1	chr14	37048864	37049064	-	1	NA	NA	NA	50	NM_001301694	57811	Mm.20460	NM_021340	ENSMUSG00000021804	Rgr	-	retinal G protein coupled receptor	protein-coding	0.000000	0.492537	-34(CCATTTAAAAGG,+,0.00),-34(CCATTTAAAAGG,-,0.00)
mm_74043.1	chr8	122006779	122006979	+	1	NA	NA	NA	28855	NR_106096	102466915		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	0.020000	0.527363	
mm_172686.1	chr8	57397121	57397321	-	1	NA	NA	NA	-58702	NM_009136	20284	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.025000	0.512438	
mm_50562.1	chr6	49047851	49048051	+	1	NA	NA	NA	11433	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.035000	0.537313	
mm_62044.1	chr7	92258728	92258928	+	1	NA	NA	NA	23858	NM_001243047	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.005000	0.457711	
mm_67211.1	chr7	74382198	74382398	-	1	NA	NA	NA	172482	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.000000	0.492537	76(GCTTATCAAGAC,+,0.00)
mm_111674.1	chr12	103338425	103338625	-	1	NA	NA	NA	17476	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.025000	0.587065	
mm_29352.1	chr3	108445063	108445263	-	1	NA	NA	NA	96	NM_011319	20226	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0.075000	0.636816	
mm_75968.1	chr8	72002439	72002639	-	1	NA	NA	NA	7087	NM_024444	72054	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	0.010000	0.567164	
mm_155441.1	chrX	73494798	73494998	+	1	NA	NA	NA	-8188	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.000000	0.502488	
mm_47094.1	chr5	117900284	117900484	-	1	NA	NA	NA	33545	NM_008712	18125	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.020000	0.552239	
mm_12993.1	chr2	90885719	90885919	+	1	NA	NA	NA	33	NM_026161	67445	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0.090000	0.721393	
mm_83486.1	chr9	45935978	45936178	-	1	NA	NA	NA	-20	NM_011526	21345	Mm.283283	NM_011526	ENSMUSG00000032085	Tagln	Sm22|Sm22a|Ws310	transgelin	protein-coding	0.050000	0.631841	-94(GCCCATAAAAGG,-,0.00)
mm_58064.1	chr6	136872681	136872881	-	1	NA	NA	NA	3042	NM_008597	17313	Mm.243085	NM_008597	ENSMUSG00000030218	Mgp	Mglap	matrix Gla protein	protein-coding	0.035000	0.507463	
mm_17624.1	chr2	31031558	31031758	-	1	NA	NA	NA	49379	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.015000	0.402985	
mm_141081.1	chr17	25868648	25868848	-	1	NA	NA	NA	-10	NM_026633	68241	Mm.328870	NM_026633	ENSMUSG00000025732	Fam195a	9530058B02Rik|Mcrip2	family with sequence similarity 195, member A	protein-coding	0.060000	0.656716	-77(CTCCTTTAAGGG,-,0.00),-76(TCCTTTAAGGGC,+,0.00),-75(CCTTTAAGGGCA,+,0.00),-22(CTCCTTAAAGGG,-,0.00),-20(CCTTAAAGGGGC,+,0.00)
mm_76161.1	chr8	82372077	82372277	-	1	NA	NA	NA	30409	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.015000	0.393035	
mm_167495.1	chr9	13246874	13247074	+	1	NA	NA	NA	18	NM_025534	66396	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.080000	0.686567	
mm_159048.1	chr1	185247608	185247808	+	1	NA	NA	NA	4733	NR_035529	100316737		NR_035529	ENSMUSG00000105770	Mir664	mir-664|mmu-mir-664	microRNA 664	ncRNA	0.015000	0.492537	72(CTTTATTTAAGG,-,0.00)
mm_22008.1	chr2	167775084	167775284	-	1	NA	NA	NA	84007	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.010000	0.587065	-6(CCTCTTAAGGTG,+,0.00)
mm_101931.1	chr11	50205952	50206152	-	1	NA	NA	NA	4768	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.000000	0.482587	
mm_74886.1	chr8	25102038	25102238	-	1	NA	NA	NA	-327	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.070000	0.582090	
mm_52282.1	chr6	108660680	108660880	+	1	NA	NA	NA	151	NM_011498	20893	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0.040000	0.601990	
mm_27655.1	chr3	63964680	63964880	-	1	NA	NA	NA	-47	NM_015728	11416	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	0.115000	0.592040	
mm_157738.1	chrX	72656067	72656267	-	1	NA	NA	NA	79	NM_008067	14396	Mm.102286	NM_008067	ENSMUSG00000031343	Gabra3	Gabra-3	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 3	protein-coding	0.020000	0.507463	
mm_162627.1	chr1	185283039	185283239	+	1	NA	NA	NA	-30180	NR_029580	387189		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	0.025000	0.457711	
mm_108680.1	chr12	86734246	86734446	+	1	NA	NA	NA	-23	NM_001195767	627607	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0.030000	0.512438	
mm_50070.1	chr6	41271294	41271494	+	1	NA	NA	NA	-30878	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.000000	0.432836	
mm_66523.1	chr7	45126137	45126337	-	1	NA	NA	NA	198	NR_000003	27211		NR_000003	ENSMUSG00000065818	Snord35a	Rnu35a|U35|U35A	small nucleolar RNA, C/D box 35A	snoRNA	0.025000	0.577114	
mm_47331.1	chr5	122500270	122500470	-	1	NA	NA	NA	1855	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.015000	0.442786	
mm_165954.1	chr4	86796467	86796667	+	1	NA	NA	NA	48012	NM_184088	329877	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	0.005000	0.303483	
mm_135126.1	chr16	35843739	35843939	-	1	NA	NA	NA	27543	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.000000	0.383085	
mm_142815.1	chr17	51739831	51740031	-	1	NA	NA	NA	72123	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.030000	0.457711	
mm_169230.1	chr13	67239201	67239401	+	1	NA	NA	NA	29767	NM_001001152	238690	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	0.035000	0.497512	
mm_164604.1	chr17	29886723	29886923	+	1	NA	NA	NA	1059	NM_001081160	74762	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0.055000	0.611940	
mm_112962.1	chr13	21180477	21180677	+	1	NA	NA	NA	646	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.100000	0.691542	
mm_47397.1	chr5	123046877	123047077	-	1	NA	NA	NA	39	NM_001347456	74890	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0.000000	0.542289	
mm_100825.1	chr11	5277464	5277664	-	1	NA	NA	NA	-15954	NM_032396	84035	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	0.000000	0.353234	
mm_69008.1	chr7	126703055	126703255	-	1	NA	NA	NA	1065	NM_001301374	12721	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.035000	0.552239	
mm_115370.1	chr13	113032947	113033147	+	1	NA	NA	NA	-2332	NM_001281487	238896		NM_001281487	ENSMUSG00000078926	Cdc20b	EG238896|EG622422	cell division cycle 20B	protein-coding	0.000000	0.477612	
mm_164284.1	chr15	102954385	102954585	+	1	NA	NA	NA	-41	NM_001024842	109663	Mm.37692	NM_001024842	ENSMUSG00000001656	Hoxc11	Hox-3.7	homeobox C11	protein-coding	0.075000	0.542289	
mm_36727.1	chr4	99120745	99120945	-	1	NA	NA	NA	70	NM_001290636	67299	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0.180000	0.805970	
mm_156699.1	chrX	159489218	159489418	+	1	NA	NA	NA	30193	NM_001313753	78283	Mm.160079	NM_001081124	ENSMUSG00000041020	Map7d2	1600028E09Rik|2900002G04Rik|5330432J06Rik|C030036K04Rik|Mtap7d2	MAP7 domain containing 2	protein-coding	0.015000	0.427861	
mm_82743.1	chr9	26802477	26802677	-	1	NA	NA	NA	3840	NM_153803	244757	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0.005000	0.432836	
mm_136108.1	chr16	85455025	85455225	-	1	NA	NA	NA	95248	NM_144853	224405	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding	0.000000	0.388060	
mm_37602.1	chr4	126752496	126752696	-	1	NA	NA	NA	833	NM_011986	26562	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	0.030000	0.552239	
mm_31902.1	chr4	83773540	83773740	+	1	NA	NA	NA	248095	NM_001081012	320226	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	0.000000	0.263682	
mm_20180.1	chr2	122595033	122595233	-	1	NA	NA	NA	16144	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.010000	0.348259	
mm_82186.1	chr9	123936850	123937050	+	1	NA	NA	NA	31742	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.000000	0.442786	
mm_34222.1	chr4	140992272	140992472	+	1	NA	NA	NA	5499	NM_001164366	74772	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.055000	0.651741	
mm_107650.1	chr12	52575308	52575508	+	1	NA	NA	NA	26914	NR_045910	73278	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0.005000	0.353234	
mm_92117.1	chr10	63244053	63244253	-	1	NA	NA	NA	356	NM_026101	67345	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0.090000	0.686567	
mm_86665.1	chr10	17919217	17919417	+	1	NA	NA	NA	28750	NM_001033432	380629	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.000000	0.492537	
mm_42057.1	chr5	108694139	108694339	+	1	NA	NA	NA	10	NM_054071	116701	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0.140000	0.761194	
mm_6317.1	chr1	71601168	71601368	-	1	NA	NA	NA	44112	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.020000	0.477612	
mm_91317.1	chr10	24953903	24954103	-	1	NA	NA	NA	-26533	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.010000	0.472637	
mm_82400.1	chr9	14751902	14752102	-	1	NA	NA	NA	120	NM_010242	14345	Mm.63450	NM_010242	ENSMUSG00000049307	Fut4	AI451562|CD15|FAL|FucT-IV|LeX|SSEA-1|Ssea1	fucosyltransferase 4	protein-coding	0.115000	0.751244	
mm_79961.1	chr9	66350326	66350526	+	1	NA	NA	NA	-24	NM_145617	235439	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.120000	0.676617	
mm_136301.1	chr16	91548199	91548399	-	1	NA	NA	NA	1205	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.015000	0.422886	
mm_63298.1	chr7	126813908	126814108	+	1	NA	NA	NA	-2877	NM_026884	68952	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0.025000	0.522388	
mm_53657.1	chr6	141275000	141275200	+	1	NA	NA	NA	25831	NM_018779	54611	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0.010000	0.437811	
mm_170104.1	chr17	39844562	39844762	+	1	NA	NA	NA	1665	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.115000	0.686567	
mm_71660.1	chr8	60632711	60632911	+	1	NA	NA	NA	-14	NM_027756	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	0.110000	0.746269	
mm_160885.1	chr11	69801410	69801610	-	1	NA	NA	NA	206	NM_001291104	14166	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	0.110000	0.701493	
mm_112821.1	chr13	20801071	20801271	+	1	NA	NA	NA	7058	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.393035	
mm_131483.1	chr16	17208547	17208747	+	1	NA	NA	NA	512	NM_001033338	239731	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	0.080000	0.666667	
mm_164828.1	chr18	37477751	37477951	+	1	NA	NA	NA	83	NM_053141	93887	Mm.197441	NM_053141	ENSMUSG00000047910	Pcdhb16	Pcdhb8|PcdhbP	protocadherin beta 16	protein-coding	0.015000	0.462687	-70(CCATTAATAGGG,+,0.00)
mm_29134.1	chr3	105770908	105771108	-	1	NA	NA	NA	30373	NM_145541	109905	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein-1a	protein-coding	0.000000	0.303483	
mm_117810.1	chr13	97711126	97711326	-	1	NA	NA	NA	151226	NR_046157	328314	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.015000	0.492537	10(TGTTCTAAAAGG,-,0.00)
mm_161256.1	chr13	108653881	108654081	+	1	NA	NA	NA	-196	NM_011056	238871	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	0.000000	0.348259	
mm_89576.1	chr10	95563769	95563969	+	1	NA	NA	NA	298	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.185000	0.820896	
mm_97898.1	chr11	83409153	83409353	+	1	NA	NA	NA	-819	NM_001013386	276952	Mm.66275	NM_001013386	ENSMUSG00000020684	Rasl10b	B230331P10Rik|Gm729|VTS58635	RAS-like, family 10, member B	protein-coding	0.020000	0.597015	
mm_30911.1	chr4	32445431	32445631	+	1	NA	NA	NA	28096	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.005000	0.333333	
mm_119336.1	chr14	40448288	40448488	+	1	NA	NA	NA	444577	NM_177816	328381	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.010000	0.487562	
mm_70255.1	chr8	3509067	3509267	+	1	NA	NA	NA	-6217	NM_001122818	50767	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0.020000	0.537313	
mm_69492.1	chr7	134224868	134225068	-	1	NA	NA	NA	129	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.100000	0.666667	
mm_172003.1	chr6	107966601	107966801	+	1	NA	NA	NA	-98344	NM_001276356	74729	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	0.000000	0.457711	
mm_97422.1	chr11	78037816	78038016	+	1	NA	NA	NA	-25	NM_001040403	14252	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	0.105000	0.736318	
mm_82684.1	chr9	22213758	22213958	-	1	NA	NA	NA	2	NR_027981	69862	Mm.488068	NM_001033151	ENSMUSG00000090925	1810064F22Rik	-	RIKEN cDNA 1810064F22 gene	ncRNA	0.010000	0.522388	
mm_162565.1	chr1	172484172	172484372	+	1	NA	NA	NA	1955	NM_033608	93842	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	0.020000	0.497512	
mm_37058.1	chr4	116053294	116053494	-	1	NA	NA	NA	482	NM_028142	72181	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	0.020000	0.477612	
mm_13011.1	chr2	90917663	90917863	+	1	NA	NA	NA	287	NM_025576	66461	Mm.23926	NM_025576		Ptpmt1	1110001D10Rik|2810004N20Rik|PLIP	protein tyrosine phosphatase, mitochondrial 1	protein-coding	0.130000	0.791045	
mm_117383.1	chr13	73346193	73346393	-	1	NA	NA	NA	1091	NR_045293	432777	Mm.415319	NR_045293		D630045M09Rik	AU019512	RIKEN cDNA D630045M09 gene	ncRNA	0.010000	0.502488	
mm_59636.1	chr7	28157535	28157735	+	1	NA	NA	NA	-12113	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.040000	0.477612	
mm_34939.1	chr4	155841344	155841544	+	1	NA	NA	NA	1764	NM_024263	74761	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	0.035000	0.587065	
mm_132503.1	chr16	36954593	36954793	+	1	NA	NA	NA	19710	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.010000	0.457711	
mm_40608.1	chr5	64505414	64505614	+	1	NA	NA	NA	28506	NR_045413	77382	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	0.045000	0.542289	
mm_115538.1	chr13	6640571	6640771	-	1	NA	NA	NA	8100	NM_019703	56421	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.000000	0.368159	
mm_11645.1	chr2	34958762	34958962	+	1	NA	NA	NA	2910	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.015000	0.562189	
mm_98204.1	chr11	87796284	87796484	+	1	NA	NA	NA	2600	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.015000	0.572139	
mm_159229.1	chr2	133553216	133553416	+	1	NA	NA	NA	1157	NM_007553	12156	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.065000	0.616915	
mm_168360.1	chr1	115151959	115152159	+	1	NA	NA	NA	-533078	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.055000	0.542289	-29(CTCCATAAAAGG,-,0.00),-27(CCATAAAAGGGG,+,0.00)
mm_1939.1	chr1	86190943	86191143	+	1	NA	NA	NA	36263	NM_001310702	78795	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.010000	0.537313	-94(CACTTTTTAGGG,-,0.00),-92(CTTTTTAGGGCC,+,0.00)
mm_129861.1	chr15	83350107	83350307	-	1	NA	NA	NA	40	NM_025445	66251	Mm.258910	NM_025445	ENSMUSG00000054277	Arfgap3	0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1	ADP-ribosylation factor GTPase activating protein 3	protein-coding	0.095000	0.686567	
mm_21036.1	chr2	152490098	152490298	-	1	NA	NA	NA	-60	NM_001002791	442835	Mm.99065	NM_001002791	ENSMUSG00000027468	Defb22	9230002F21Rik	defensin beta 22	protein-coding	0.000000	0.497512	
mm_115643.1	chr13	12274046	12274246	-	1	NA	NA	NA	-16033	NM_001081128	238505	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.015000	0.512438	
mm_101124.1	chr11	12037255	12037455	-	1	NA	NA	NA	65	NM_010345	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.120000	0.691542	
mm_42620.1	chr5	118037881	118038081	+	1	NA	NA	NA	10157	NM_021344	57816	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	0.025000	0.656716	
mm_126788.1	chr15	86277559	86277759	+	1	NA	NA	NA	63200	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.025000	0.587065	
mm_7004.1	chr1	86467330	86467530	-	1	NA	NA	NA	41101	NM_027966	71863	Mm.179627	NM_027966	ENSMUSG00000036574	1700019O17Rik	-	RIKEN cDNA 1700019O17 gene	protein-coding	0.035000	0.477612	
mm_154863.1	chrX	20662804	20663004	+	1	NA	NA	NA	8	NM_001136085	22201	Mm.1104	NM_009457	ENSMUSG00000001924	Uba1	A1S9|Sbx|Ube-1|Ube1x	ubiquitin-like modifier activating enzyme 1	protein-coding	0.050000	0.597015	
mm_138577.1	chr17	35439094	35439294	+	1	NA	NA	NA	27	NM_001201460	110558	Mm.431282	NM_001201460		H2-Q9	H-2Q9|Ped|Qa-2|Qa-9|Qa9	histocompatibility 2, Q region locus 9	protein-coding	0.085000	0.626866	
mm_116067.1	chr13	27637534	27637734	-	1	NA	NA	NA	4859	NM_001164058	19113	Mm.196424	NM_008930	ENSMUSG00000006488	Prl7a1	AA407021|AA409971|AA410116|PLP-E|PLP-G|Prlpe|Prlpg	prolactin family 7, subfamily a, member 1	protein-coding	0.010000	0.373134	
mm_3102.1	chr1	134455416	134455616	+	1	NA	NA	NA	-15	NM_153128	240756	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	0.110000	0.666667	
mm_12035.1	chr2	58755582	58755782	+	1	NA	NA	NA	498	NM_029692	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.010000	0.477612	65(AACTTTATAAGA,-,0.00)
mm_101796.1	chr11	46221305	46221505	-	1	NA	NA	NA	-10730	NR_105955	102465598		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0.025000	0.562189	
mm_44122.1	chr5	149527355	149527555	+	1	NA	NA	NA	-1224	NM_029440	381693	Mm.136919	NM_029440	ENSMUSG00000029658	Wdr95	4930434E21Rik	WD40 repeat domain 95	protein-coding	0.020000	0.567164	-36(CACTATAAAAGG,-,0.00)
mm_147367.1	chr18	43438138	43438338	-	1	NA	NA	NA	48	NM_001291455	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.085000	0.681592	
mm_93430.1	chr10	109010514	109010714	-	1	NA	NA	NA	361	NM_009306	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding	0.080000	0.656716	
mm_96002.1	chr11	59449968	59450168	+	1	NA	NA	NA	23	NM_001205068	194952	Mm.295954	NM_178659	ENSMUSG00000036819	Jmjd4	6430559I23	jumonji domain containing 4	protein-coding	0.100000	0.661692	
mm_45566.1	chr5	73212542	73212742	-	1	NA	NA	NA	43976	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.020000	0.462687	
mm_8383.1	chr1	151252731	151252931	-	1	NA	NA	NA	-91667	NM_001039512	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.025000	0.492537	
mm_42292.1	chr5	114412450	114412650	+	1	NA	NA	NA	8082	NR_105994	102465621		NR_105994	ENSMUSG00000098731	Mir7027	Gm27831|mmu-mir-7027	microRNA 7027	ncRNA	0.030000	0.577114	
mm_28715.1	chr3	95658516	95658716	-	1	NA	NA	NA	-105	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.115000	0.681592	
mm_3016.1	chr1	133363697	133363897	+	1	NA	NA	NA	225	NM_175443	214253	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	0.070000	0.716418	
mm_95261.1	chr11	44682341	44682541	+	1	NA	NA	NA	64341	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.010000	0.313433	
mm_153233.1	chr19	35748706	35748906	-	1	NA	NA	NA	308554	NM_001347442	15566	Mm.254266	NM_008315	ENSMUSG00000024798	Htr7	5-HT7	5-hydroxytryptamine (serotonin) receptor 7	protein-coding	0.010000	0.407960	
mm_17692.1	chr2	32337710	32337910	-	1	NA	NA	NA	15519	NM_001301737	13429	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	0.040000	0.597015	
mm_72729.1	chr8	85080752	85080952	+	1	NA	NA	NA	-106	NM_026399	67836	Mm.334680	NM_026399	ENSMUSG00000005150	Wdr83	1500041N16Rik|Morg1	WD repeat domain containing 83	protein-coding	0.025000	0.437811	78(TACTCTAAAAGC,-,0.00)
mm_62672.1	chr7	109439032	109439232	+	1	NA	NA	NA	-79	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	0.120000	0.706468	
mm_165100.1	chr19	55251739	55251939	+	1	NA	NA	NA	-1530	NM_027976	433256	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.005000	0.442786	-54(CCTCTTAAATCC,+,0.00)
mm_106681.1	chr12	3109968	3110168	+	1	NA	NA	NA	-125723	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.015000	0.398010	
mm_123136.1	chr14	56571745	56571945	-	1	NA	NA	NA	1	NM_001014996	219103	Mm.212525	NM_001014996	ENSMUSG00000064128	Cenpj	4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4	centromere protein J	protein-coding	0.080000	0.621891	
mm_142959.1	chr17	56120517	56120717	-	1	NA	NA	NA	1329	NM_029796	76905	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0.090000	0.696517	
mm_91405.1	chr10	30843048	30843248	-	1	NA	NA	NA	-365	NM_013904	15214	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	0.105000	0.656716	
mm_110620.1	chr12	57117533	57117733	-	1	NA	NA	NA	43010	NM_001167976	217593	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0.005000	0.318408	
mm_89492.1	chr10	93831347	93831547	+	1	NA	NA	NA	-108	NM_183199	327799	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.035000	0.527363	
mm_122992.1	chr14	54989272	54989472	-	1	NA	NA	NA	5177	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.030000	0.527363	-59(CCTTTTCTGGGC,+,0.00)
mm_160964.1	chr11	99603227	99603427	-	1	NA	NA	NA	-19	NM_001127354	100041412	Mm.351891	NM_001127354	ENSMUSG00000057674	Gm11938	-	predicted gene 11938	protein-coding	0.005000	0.502488	-35(AGGTATATAAAG,-,0.00),-33(GTATATAAAGGG,-,0.00)
mm_100693.1	chr11	3529785	3529985	-	1	NA	NA	NA	9407	NM_013870	29856	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.035000	0.656716	
mm_69433.1	chr7	132813752	132813952	-	1	NA	NA	NA	-656	NM_212473	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.160000	0.781095	
mm_154633.1	chrX	7762725	7762925	+	1	NA	NA	NA	164	NM_172472	209446	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	0.085000	0.671642	
mm_133715.1	chr16	93607812	93608012	+	1	NA	NA	NA	75	NM_007620	12408	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	0.075000	0.597015	
mm_25024.1	chr3	98114268	98114468	+	1	NA	NA	NA	-46266	NM_027665	71078	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.005000	0.353234	
mm_14602.1	chr2	136501855	136502055	+	1	NA	NA	NA	-30366	NM_175667	319196	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0.000000	0.358209	
mm_127878.1	chr15	8634773	8634973	-	1	NA	NA	NA	75934	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.010000	0.343284	
mm_127793.1	chr15	3583067	3583267	-	1	NA	NA	NA	185	NM_001048178	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.095000	0.721393	
mm_106442.1	chr11	119834315	119834515	-	1	NA	NA	NA	-50	NR_045312	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	0.030000	0.552239	
mm_70755.1	chr8	19784541	19784741	+	1	NA	NA	NA	55065	NM_001039553	626415	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	ENSMUSG00000074453|OTTMUSG00000018948|TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	0.070000	0.641791	
mm_24123.1	chr3	88200202	88200402	+	1	NA	NA	NA	-14869	NR_037276	100526540		NR_037276	ENSMUSG00000092988	Mir3093	mir-3093|mmu-mir-3093	microRNA 3093	ncRNA	0.040000	0.567164	
mm_111032.1	chr12	79175789	79175989	-	1	NA	NA	NA	-3431	NM_016800	53612	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	0.015000	0.467662	
mm_139453.1	chr17	55952564	55952764	+	1	NA	NA	NA	41	NM_015766	50498	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	0.015000	0.587065	
mm_67396.1	chr7	79878211	79878411	-	1	NA	NA	NA	-35959	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.005000	0.452736	
mm_25645.1	chr3	121369553	121369753	+	1	NA	NA	NA	-56888	NM_028044	71994	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0.015000	0.527363	-30(CCTTATAAGTCC,+,0.00)
mm_20756.1	chr2	140671317	140671517	-	1	NA	NA	NA	59	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.065000	0.601990	
mm_61345.1	chr7	68286072	68286272	+	1	NA	NA	NA	-9578	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.015000	0.442786	
mm_140108.1	chr17	78573809	78574009	+	1	NA	NA	NA	65846	NM_028813	74199	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik	vitrin	protein-coding	0.025000	0.547264	
mm_88631.1	chr10	79887535	79887735	+	1	NA	NA	NA	1323	NM_015779	50701	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0.025000	0.616915	
mm_156595.1	chrX	152235856	152236056	+	1	NA	NA	NA	2729	NM_013668	20591	Mm.142655	NM_013668	ENSMUSG00000025332	Kdm5c	D930009K15Rik|Jarid1c|Smcx|mKIAA0234	lysine (K)-specific demethylase 5C	protein-coding	0.010000	0.407960	
mm_61486.1	chr7	75701890	75702090	+	1	NA	NA	NA	-146348	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.010000	0.482587	
mm_36824.1	chr4	105109771	105109971	-	1	NA	NA	NA	27	NM_178143	108079	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding	0.170000	0.805970	
mm_30250.1	chr3	146596426	146596626	-	1	NA	NA	NA	-623	NM_009474	22262	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.025000	0.527363	
mm_94636.1	chr11	16871708	16871908	+	1	NA	NA	NA	79474	NR_110421	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.035000	0.462687	88(GAGCATATATGG,-,0.00)
mm_170523.1	chr19	33187431	33187631	+	1	NA	NA	NA	204764	NM_001167818	67795	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	0.000000	0.422886	
mm_114282.1	chr13	58364509	58364709	+	1	NA	NA	NA	-9747	NM_175214	75050	Mm.446094	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	0.010000	0.467662	
mm_92316.1	chr10	75517191	75517391	-	1	NA	NA	NA	90	NM_175133	68778	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.110000	0.721393	
mm_49974.1	chr6	40812491	40812691	+	1	NA	NA	NA	74903	NM_139296	194357	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0.005000	0.497512	
mm_79464.1	chr9	56419387	56419587	+	1	NA	NA	NA	641	NM_025812	66867	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0.015000	0.422886	41(GCTCTTTTAAGG,-,0.00),43(TCTTTTAAGGAG,+,0.00)
mm_50095.1	chr6	41532912	41533112	+	1	NA	NA	NA	11236	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.020000	0.507463	
mm_114760.1	chr13	85196169	85196369	+	1	NA	NA	NA	6884	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0.010000	0.273632	
mm_129153.1	chr15	76231969	76232169	-	1	NA	NA	NA	-691	NM_011117	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.085000	0.661692	
mm_18908.1	chr2	76730076	76730276	-	1	NA	NA	NA	54861	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.010000	0.467662	
mm_88404.1	chr10	76717170	76717370	+	1	NA	NA	NA	8774	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.015000	0.537313	
mm_121754.1	chr14	19626904	19627104	-	1	NA	NA	NA	-24417	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.035000	0.363184	
mm_113227.1	chr13	27094090	27094290	+	1	NA	NA	NA	1	NM_008864	18775	Mm.233151	NM_008864	ENSMUSG00000057170	Prl3d1	AI325057|Csh1|Ghd4|PL-I|PL-I-alpha|PL-Ia|Pl-1|Pl1|mPL-I	prolactin family 3, subfamily d, member 1	protein-coding	0.015000	0.442786	
mm_42391.1	chr5	114937035	114937235	+	1	NA	NA	NA	-5067	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.060000	0.577114	
mm_35181.1	chr4	15945274	15945474	-	1	NA	NA	NA	133	NM_026172	67460	Mm.393293	NM_026172	ENSMUSG00000028223	Decr1	1200012F07Rik|Decr|Nadph	2,4-dienoyl CoA reductase 1, mitochondrial	protein-coding	0.075000	0.696517	
mm_63837.1	chr7	135605538	135605738	+	1	NA	NA	NA	-190	NM_001316679	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.000000	0.532338	
mm_121395.1	chr14	119137615	119137815	+	1	NA	NA	NA	-550	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.090000	0.671642	
mm_30788.1	chr4	19575477	19575677	+	1	NA	NA	NA	511	NM_025476	66302	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	0.045000	0.532338	
mm_41548.1	chr5	92919544	92919744	+	1	NA	NA	NA	21651	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.050000	0.582090	
mm_124234.1	chr14	101463084	101463284	-	1	NA	NA	NA	146007	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.040000	0.522388	
mm_152164.1	chr19	7294994	7295194	-	1	NA	NA	NA	353	NM_001080390	13728	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.040000	0.616915	
mm_83021.1	chr9	36923524	36923724	-	1	NA	NA	NA	79965	NM_183171	235180	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	0.015000	0.527363	
mm_35909.1	chr4	49844786	49844986	-	1	NA	NA	NA	883	NM_001033351	242443	Mm.440095	NM_001033351	ENSMUSG00000039579	Grin3a	6430537F04|A830097C19Rik|NMDAR-L|NR3A|mKIAA1973	glutamate receptor ionotropic, NMDA3A	protein-coding	0.120000	0.726368	
mm_26942.1	chr3	20266190	20266390	-	1	NA	NA	NA	9443	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.010000	0.373134	
mm_123131.1	chr14	56262123	56262323	-	1	NA	NA	NA	111	NM_013542	14939	Mm.14874	NM_013542	ENSMUSG00000015437	Gzmb	AI553453|CCP-1/C11|CCP1|Ctla-1|Ctla1|GZB	granzyme B	protein-coding	0.015000	0.537313	-51(CATCATAAAAGC,-,0.00)
mm_164078.1	chr14	122451097	122451297	-	1	NA	NA	NA	-51	NR_033326	328479	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.055000	0.646766	75(CGCTCTTAAAGA,-,0.00),76(GCTCTTAAAGAG,+,0.00),78(TCTTAAAGAGAC,+,0.00)
mm_106006.1	chr11	115807987	115808187	-	1	NA	NA	NA	5505	NM_080643	140721	Mm.383737	NM_080643	ENSMUSG00000034471	Caskin2	1600028L06Rik|mKIAA1139	CASK-interacting protein 2	protein-coding	0.035000	0.606965	-51(GGCTCTATAAAC,-,0.00)
mm_48797.1	chr5	148928723	148928923	-	1	NA	NA	NA	-176	NM_153572	231912	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	0.075000	0.676617	
mm_11337.1	chr2	30658611	30658811	+	1	NA	NA	NA	19300	NR_136917	665635	Mm.450149	NR_136917		Gm14486	OTTMUSG00000016802	predicted gene 14486	ncRNA	0.125000	0.726368	
mm_24095.1	chr3	88030779	88030979	+	1	NA	NA	NA	-3368	NM_022031	73940	Mm.294467	NM_022031	ENSMUSG00000004894	Hapln2	4930401E20Rik|Bral1	hyaluronan and proteoglycan link protein 2	protein-coding	0.045000	0.572139	
mm_86696.1	chr10	18469844	18470044	+	1	NA	NA	NA	-37	NM_001163592	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.015000	0.517413	
mm_8189.1	chr1	138099563	138099763	-	1	NA	NA	NA	75463	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.015000	0.363184	
mm_122283.1	chr14	34503128	34503328	-	1	NA	NA	NA	-682	NM_009758	12166	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK3|AU045487|BMPR-IA|Bmpr	bone morphogenetic protein receptor, type 1A	protein-coding	0.085000	0.641791	
mm_43888.1	chr5	143909910	143910110	+	1	NA	NA	NA	9	NM_008886	18861	Mm.2950	NM_008886	ENSMUSG00000075569	Pms2	AW555130|Pmsl2	postmeiotic segregation increased 2 (S. cerevisiae)	protein-coding	0.075000	0.606965	
mm_93365.1	chr10	103368966	103369166	-	1	NA	NA	NA	1258	NM_175328	103098	Mm.458408	NM_175328	ENSMUSG00000019894	Slc6a15	AA536730|AI326450|AI326451|v7-3	solute carrier family 6 (neurotransmitter transporter), member 15	protein-coding	0.045000	0.477612	-35(GACTTTAAAAGC,-,0.00),-34(ACTTTAAAAGCG,+,0.00)
mm_147184.1	chr18	36783027	36783227	-	1	NA	NA	NA	78	NM_008214	15115	Mm.10528	NM_008214	ENSMUSG00000001380	Hars	MMHRS	histidyl-tRNA synthetase	protein-coding	0.060000	0.606965	
mm_9866.1	chr1	184858314	184858514	-	1	NA	NA	NA	-12567	NM_133684	67247	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0.005000	0.502488	
mm_14363.1	chr2	129616414	129616614	+	1	NA	NA	NA	23345	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.040000	0.502488	
mm_76204.1	chr8	83332269	83332469	-	1	NA	NA	NA	117	NM_001170691	244548	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	0.095000	0.616915	
mm_59634.1	chr7	28157476	28157676	+	1	NA	NA	NA	-12172	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.025000	0.447761	-97(TTCCTTAAATGG,-,0.00),-95(CCTTAAATGGAT,+,0.00)
mm_148024.1	chr18	68590783	68590983	-	1	NA	NA	NA	-148517	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0.025000	0.482587	
mm_17195.1	chr2	25468000	25468200	-	1	NA	NA	NA	1649	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.030000	0.606965	
mm_55692.1	chr6	72789151	72789351	-	1	NA	NA	NA	-206	NM_009332	21415	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.110000	0.761194	
mm_35971.1	chr4	53157624	53157824	-	1	NA	NA	NA	2171	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.005000	0.303483	
mm_131438.1	chr16	16072647	16072847	+	1	NA	NA	NA	74104	NM_146068	224008	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0.010000	0.502488	
mm_67173.1	chr7	73558296	73558496	-	1	NA	NA	NA	-1	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.090000	0.711443	
mm_20533.1	chr2	131041237	131041437	-	1	NA	NA	NA	-939	NR_105969	102465606		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	0.150000	0.791045	
mm_135545.1	chr16	49792682	49792882	-	1	NA	NA	NA	-62872	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.035000	0.487562	
mm_45755.1	chr5	86795126	86795326	-	1	NA	NA	NA	-9040	NM_001347375	231386	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.005000	0.393035	-43(GCCCCTAAAAAG,-,0.00)
mm_85841.1	chr9	110532829	110533029	-	1	NA	NA	NA	332	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.150000	0.800995	
mm_32008.1	chr4	94735118	94735318	+	1	NA	NA	NA	-4071	NM_001290549	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	0.000000	0.467662	
mm_114319.1	chr13	60601600	60601800	+	1	NA	NA	NA	-247	NM_001285917	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.050000	0.442786	
mm_168632.1	chr1	182393510	182393710	-	1	NA	NA	NA	-15557	NM_173378	209456	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.010000	0.412935	
mm_33715.1	chr4	133968051	133968251	+	1	NA	NA	NA	-160	NM_016957	15331	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	0.090000	0.661692	
mm_27226.1	chr3	36222210	36222410	-	1	NA	NA	NA	-35	NM_198192	229214	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	0.040000	0.572139	
mm_86962.1	chr10	25128490	25128690	+	1	NA	NA	NA	71580	NM_001347460	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.025000	0.517413	
mm_74488.1	chr8	4779366	4779566	-	1	NA	NA	NA	68	NM_011369	20419	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	0.080000	0.582090	
mm_159141.1	chr2	85823114	85823314	+	1	NA	NA	NA	241	NM_146586	258579	Mm.223106	NM_146586	ENSMUSG00000043892	Olfr1018	MOR260-5	olfactory receptor 1018	protein-coding	0.015000	0.452736	
mm_79194.1	chr9	48494953	48495153	+	1	NA	NA	NA	277	NM_001326355	67010	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	0.095000	0.631841	
mm_126249.1	chr15	79028377	79028577	+	1	NA	NA	NA	265	NM_008197	14958	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	0.135000	0.751244	
mm_114908.1	chr13	94875557	94875757	+	1	NA	NA	NA	30	NM_011021	18420	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	0.030000	0.378109	-64(CTCTCTAAAGGA,-,0.00)
mm_54689.1	chr6	39420556	39420756	-	1	NA	NA	NA	-287	NM_018810	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.010000	0.527363	
mm_121997.1	chr14	26591528	26591728	-	1	NA	NA	NA	12078	NM_145969	211922	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	0.000000	0.552239	
mm_119046.1	chr14	30626247	30626447	+	1	NA	NA	NA	-139	NM_011103	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.075000	0.681592	
mm_159922.1	chr6	54603013	54603213	+	1	NA	NA	NA	-34	NM_001001335	231999	Mm.35416	NM_001001335	ENSMUSG00000005225	Plekha8	6330400G01|AA517676|BC052360|Fapp-2|Fapp2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	protein-coding	0.005000	0.492537	
mm_26563.1	chr3	146500100	146500300	+	1	NA	NA	NA	364	NM_010318	14707	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	0.120000	0.701493	
mm_148818.1	chr19	6298619	6298819	+	1	NA	NA	NA	-7738	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.015000	0.547264	13(GTCCATAAAGAC,-,0.00),68(TTCTTTTAAAGC,-,0.00),69(TCTTTTAAAGCT,+,0.00)
mm_91102.1	chr10	19065270	19065470	-	1	NA	NA	NA	-49960	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.005000	0.368159	35(TTTTATAAAGAG,+,0.00),71(GCCTTGATAAGG,-,0.00)
mm_1066.1	chr1	59150818	59151018	+	1	NA	NA	NA	10718	NM_145143	227157	Mm.474049	NM_145143	ENSMUSG00000079550	Mpp4	Dlg6	membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)	protein-coding	0.010000	0.497512	
mm_109837.1	chr12	4233839	4234039	-	1	NA	NA	NA	-88	NM_001204912	69709	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.045000	0.527363	
mm_152047.1	chr19	6141313	6141513	-	1	NA	NA	NA	-276	NM_019722	56327	Mm.21071	NM_019722	ENSMUSG00000024944	Arl2	2610009M23Rik|AI115441|AW553335	ADP-ribosylation factor-like 2	protein-coding	0.060000	0.542289	
mm_97694.1	chr11	80154506	80154706	+	1	NA	NA	NA	444	NM_172133	216991	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.075000	0.676617	
mm_113884.1	chr13	49187412	49187612	+	1	NA	NA	NA	-35	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.160000	0.820896	
mm_43945.1	chr5	145127926	145128126	+	1	NA	NA	NA	12063	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.000000	0.338308	-11(GCCTTTTAAAGA,-,0.00),-10(CCTTTTAAAGAA,+,0.00)
mm_6506.1	chr1	74304097	74304297	-	1	NA	NA	NA	139	NM_027154	69660	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.095000	0.761194	
mm_99436.1	chr11	102432734	102432934	+	1	NA	NA	NA	2512	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.030000	0.547264	
mm_65961.1	chr7	30435106	30435306	-	1	NA	NA	NA	10376	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.015000	0.532338	
mm_165467.1	chr2	164212477	164212677	+	1	NA	NA	NA	9086	NM_138685	192201	Mm.330764	NM_138685	ENSMUSG00000018211	Wfdc15b	9230106L14Rik|SWAM1|Wfdc15	WAP four-disulfide core domain 15B	protein-coding	0.015000	0.512438	
mm_113272.1	chr13	29172454	29172654	+	1	NA	NA	NA	156299	NR_045075	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0.010000	0.472637	
mm_21611.1	chr2	164254651	164254851	-	1	NA	NA	NA	1892	NM_173377	329557	Mm.118769	NM_173377	ENSMUSG00000050383	Svs3b	9530004A22Rik	seminal vesicle secretory protein 3B	protein-coding	0.005000	0.522388	
mm_5658.1	chr1	42654395	42654595	-	1	NA	NA	NA	40330	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.000000	0.363184	
mm_153908.1	chr19	47138085	47138285	-	1	NA	NA	NA	109	NM_133746	72691	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	0.040000	0.527363	
mm_144901.1	chr18	37307354	37307554	+	1	NA	NA	NA	-1	NM_053129	93875	Mm.196711	NM_053129	ENSMUSG00000045689	Pcdhb4	Pcdhb5A|PcdhbD	protocadherin beta 4	protein-coding	0.035000	0.482587	14(CTCCCTAAAAGA,-,0.00)
mm_5693.1	chr1	43186188	43186388	-	1	NA	NA	NA	10473	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.010000	0.467662	
mm_62663.1	chr7	108934423	108934623	+	1	NA	NA	NA	108	NM_025344	66085	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0.120000	0.731343	
mm_66676.1	chr7	45759404	45759604	-	1	NA	NA	NA	51	NM_017465	54200	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	0.095000	0.746269	
mm_76754.1	chr8	95452662	95452862	-	1	NA	NA	NA	-17893	NM_008187	14894	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.035000	0.472637	
mm_56386.1	chr6	94665236	94665436	-	1	NA	NA	NA	34809	NM_008377	16206	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.025000	0.482587	
mm_23282.1	chr3	51675052	51675252	+	1	NA	NA	NA	13973	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.005000	0.422886	
mm_39000.1	chr4	151861573	151861773	-	1	NA	NA	NA	95	NM_001081557	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.155000	0.786070	
mm_18694.1	chr2	71546042	71546242	-	1	NA	NA	NA	612	NM_010054	13392	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0.090000	0.681592	
mm_90573.1	chr10	128232233	128232433	+	1	NA	NA	NA	270	NM_001136082	21853	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0.145000	0.731343	
mm_92995.1	chr10	86705293	86705493	-	1	NA	NA	NA	51	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.085000	0.666667	
mm_78908.1	chr9	44773099	44773299	+	1	NA	NA	NA	190	NM_023831	76568	Mm.278597	NM_023831	ENSMUSG00000002031	Ift46	1500035H01Rik|AA408110|AI663846|R75047|c11orf2	intraflagellar transport 46	protein-coding	0.045000	0.572139	
mm_82787.1	chr9	28996184	28996384	-	1	NA	NA	NA	966845	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.010000	0.497512	
mm_60718.1	chr7	45325147	45325347	+	1	NA	NA	NA	289	NR_110499	100040970	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	ENSMUSG00000046721|Gm9811	ribosomal protein L14, pseudogene 1	pseudo	0.025000	0.447761	
mm_385.1	chr1	34077105	34077305	+	1	NA	NA	NA	-40154	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.015000	0.477612	-58(TTGTTTAAAAGG,-,0.00)
mm_32347.1	chr4	104856353	104856553	+	1	NA	NA	NA	19945	NM_001290645	230558	Mm.197638	NM_146148	ENSMUSG00000035031	C8a	-	complement component 8, alpha polypeptide	protein-coding	0.025000	0.492537	
mm_715.1	chr1	42694818	42695018	+	1	NA	NA	NA	-93	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.075000	0.636816	
mm_71302.1	chr8	41280252	41280452	+	1	NA	NA	NA	40593	NM_023662	18536	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	0.000000	0.238806	
mm_102285.1	chr11	55399223	55399423	-	1	NA	NA	NA	20757	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.030000	0.537313	
mm_91045.1	chr10	18604880	18605080	-	1	NA	NA	NA	-58904	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	0.005000	0.482587	-34(GACCATAAAAAG,-,0.00),-32(CCATAAAAAGGG,+,0.00)
mm_31537.1	chr4	55370166	55370366	+	1	NA	NA	NA	20224	NM_009011	19359	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	0.005000	0.597015	
mm_148175.1	chr18	78123285	78123485	-	1	NA	NA	NA	41	NM_001171010	108052	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0.025000	0.592040	21(GGGTATAAAAGG,-,0.00),77(CCGTTTAAAAGA,-,0.00)
mm_168885.1	chr12	4553703	4553903	-	1	NA	NA	NA	29690	NR_136891	102634330	Mm.402324	NR_136891		Gm31938	-	predicted gene, 31938	ncRNA	0.005000	0.512438	
mm_7503.1	chr1	121567592	121567792	-	1	NA	NA	NA	288	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	0.100000	0.696517	
mm_157255.1	chrX	19153393	19153593	-	1	NA	NA	NA	-6522	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.005000	0.417910	
mm_113784.1	chr13	45507470	45507670	+	1	NA	NA	NA	126	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.135000	0.721393	
mm_85670.1	chr9	107676340	107676540	-	1	NA	NA	NA	3152	NM_008140	14685	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.045000	0.661692	
mm_168593.1	chr1	17389674	17389874	-	1	NA	NA	NA	-212127	NM_053191	94227	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	0.065000	0.656716	
mm_142404.1	chr17	45458848	45459048	-	1	NA	NA	NA	15990	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.020000	0.522388	38(AGTTTTATAAGG,-,0.00)
mm_96656.1	chr11	69395651	69395851	+	1	NA	NA	NA	-40	NM_030083	78304	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	0.085000	0.522388	-98(GCGTTTAAAAGC,-,0.00)
mm_40321.1	chr5	43900297	43900497	+	1	NA	NA	NA	31588	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.010000	0.368159	-74(CATTTTATAGAG,+,0.00),85(CCTTTTAAAATT,+,0.00)
mm_159627.1	chr4	137336042	137336242	-	1	NA	NA	NA	21617	NM_009861	12540	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.005000	0.338308	
mm_101330.1	chr11	22982172	22982372	-	1	NA	NA	NA	12	NM_144514	17846	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	0.090000	0.671642	-54(GCTTTTATGGCC,+,0.00)
mm_71023.1	chr8	33517216	33517416	+	1	NA	NA	NA	33005	NR_033589	628431	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	0.160000	0.796020	
mm_19677.1	chr2	103454425	103454625	-	1	NA	NA	NA	30457	NM_010125	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.005000	0.343284	
mm_38954.1	chr4	150570020	150570220	-	1	NA	NA	NA	82054	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.020000	0.512438	
mm_153389.1	chr19	40382707	40382907	-	1	NA	NA	NA	19503	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.030000	0.517413	
mm_170509.1	chr19	27857928	27858128	+	1	NA	NA	NA	124920	NM_001166414	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.040000	0.502488	
mm_19756.1	chr2	105126309	105126509	-	1	NA	NA	NA	101	NR_015462	329480	Mm.246679	NR_015462	ENSMUSG00000074987	Wt1os	6030498F17|AI314831|Wt1-as	Wilms tumor 1 homolog, opposite strand	ncRNA	0.075000	0.656716	
mm_46995.1	chr5	115334424	115334624	-	1	NA	NA	NA	6637	NM_029645	384281	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	0.005000	0.407960	
mm_143930.1	chr17	85928473	85928673	-	1	NA	NA	NA	216602	NM_030133	78586	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	0.010000	0.537313	
mm_100600.1	chr11	121204668	121204868	+	1	NA	NA	NA	-120	NM_025402	66179	Mm.390403	NM_025402	ENSMUSG00000025169	Ogfod3	1110031I02Rik	2-oxoglutarate and iron-dependent oxygenase domain containing 3	protein-coding	0.100000	0.691542	
mm_48672.1	chr5	146009004	146009204	-	1	NA	NA	NA	513	NM_019792	56388	Mm.301900	NM_019792	ENSMUSG00000029630	Cyp3a25	AI327008	cytochrome P450, family 3, subfamily a, polypeptide 25	protein-coding	0.000000	0.422886	
mm_88523.1	chr10	78057183	78057383	+	1	NA	NA	NA	1948	NM_001284200	54427	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.025000	0.577114	
mm_49482.1	chr6	29533917	29534117	+	1	NA	NA	NA	4735	NM_001252382	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.025000	0.552239	
mm_147523.1	chr18	52529565	52529765	-	1	NA	NA	NA	56	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.055000	0.582090	
mm_107656.1	chr12	52783163	52783363	+	1	NA	NA	NA	83880	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.030000	0.577114	
mm_7943.1	chr1	133914781	133914981	-	1	NA	NA	NA	6520	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.035000	0.592040	
mm_36998.1	chr4	110290825	110291025	-	1	NA	NA	NA	-3398	NM_001347178	15572	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein-coding	0.000000	0.447761	-79(CCTTTTAAGCCA,+,0.00)
mm_80134.1	chr9	70678880	70679080	+	1	NA	NA	NA	-2	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.095000	0.711443	
mm_157017.1	chrX	7681143	7681343	-	1	NA	NA	NA	8	NR_037581	54634	Mm.67912	NM_018832	ENSMUSG00000031147	Magix	Pdzx|Sfc18	MAGI family member, X-linked	protein-coding	0.020000	0.472637	
mm_128949.1	chr15	74752896	74753096	-	1	NA	NA	NA	-17	NM_011838	23936	Mm.257067	NM_011838	ENSMUSG00000022594	Lynx1	AI838844|SLURP-2	Ly6/neurotoxin 1	protein-coding	0.075000	0.671642	
mm_87574.1	chr10	56388180	56388380	+	1	NA	NA	NA	10980	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.045000	0.527363	
mm_33260.1	chr4	127173127	127173327	+	1	NA	NA	NA	347	NM_001302081	242667	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	discs, large (Drosophila) homolog-associated protein 3	protein-coding	0.015000	0.582090	
mm_131986.1	chr16	25042109	25042309	+	1	NA	NA	NA	-17430	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.005000	0.482587	
mm_92161.1	chr10	67547396	67547596	-	1	NA	NA	NA	1459	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.010000	0.333333	
mm_148704.1	chr19	5801675	5801875	+	1	NA	NA	NA	897	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.358209	
mm_169488.1	chr14	73797230	73797430	-	1	NA	NA	NA	244544	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	0.040000	0.442786	
mm_43940.1	chr5	145126791	145126991	+	1	NA	NA	NA	12635	NM_023142	11867	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.025000	0.621891	
mm_39101.1	chr4	154921375	154921575	-	1	NA	NA	NA	6602	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.000000	0.398010	
mm_115758.1	chr13	19192748	19192948	-	1	NA	NA	NA	202965	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.532338	-66(GCTTTTCTGGGC,+,0.00)
mm_29841.1	chr3	129822440	129822640	-	1	NA	NA	NA	-35	NM_009102	20132	Mm.278758	NM_009102	ENSMUSG00000028012	Rrh	-	retinal pigment epithelium derived rhodopsin homolog	protein-coding	0.020000	0.432836	
mm_24881.1	chr3	95996016	95996216	+	1	NA	NA	NA	-277	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.165000	0.771144	
mm_49357.1	chr6	22288130	22288330	+	1	NA	NA	NA	3	NM_053116	93735	Mm.137403	NM_053116	ENSMUSG00000029671	Wnt16	E130309I19Rik	wingless-type MMTV integration site family, member 16	protein-coding	0.035000	0.582090	
mm_103752.1	chr11	80779824	80780024	-	1	NA	NA	NA	101	NM_177390	338367	Mm.151948	NM_177390	ENSMUSG00000035441	Myo1d	9930104H07Rik|AW544947|D11Ertd9e|myosin-1d	myosin ID	protein-coding	0.130000	0.756219	
mm_50696.1	chr6	51597665	51597865	+	1	NA	NA	NA	53242	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.005000	0.402985	22(CTTCTTAAAAGC,-,0.00)
mm_147827.1	chr18	62156573	62156773	-	1	NA	NA	NA	23308	NM_007420	11555	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.025000	0.517413	
mm_4917.1	chr1	190760862	190761062	+	1	NA	NA	NA	150808	NM_178775	320119	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.020000	0.517413	
mm_44677.1	chr5	30008741	30008941	-	1	NA	NA	NA	-4273	NM_001314054	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.015000	0.477612	
mm_95180.1	chr11	42419610	42419810	+	1	NA	NA	NA	-47	NM_008070	14401	Mm.338723	NM_008070	ENSMUSG00000007653	Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding	0.035000	0.592040	
mm_144655.1	chr18	34247551	34247751	+	1	NA	NA	NA	-25879	NR_040534	633395	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	ENSMUSG00000073607	ribosomal protein L29 pseudogene	pseudo	0.050000	0.611940	
mm_35066.1	chr4	6454139	6454339	-	1	NA	NA	NA	32	NM_010945	18201	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.135000	0.746269	
mm_104991.1	chr11	100274639	100274839	-	1	NA	NA	NA	-4868	NM_212483	68239	Mm.158190	NM_212483	ENSMUSG00000053654	Krt42	2410039E07Rik|K17n|Ka22|ecat6	keratin 42	protein-coding	0.010000	0.572139	
mm_12893.1	chr2	84798470	84798670	+	1	NA	NA	NA	-258	NM_019949	56791	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.040000	0.542289	
mm_123577.1	chr14	67000395	67000595	-	1	NA	NA	NA	8382	NM_009761	12177	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0.020000	0.422886	
mm_123568.1	chr14	66910941	66911141	-	1	NA	NA	NA	-167	NM_175498	239157	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	0.110000	0.741294	
mm_52503.1	chr6	115360768	115360968	+	1	NA	NA	NA	-83	NM_001127330	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.105000	0.721393	
mm_11616.1	chr2	34608386	34608586	+	1	NA	NA	NA	146746	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.010000	0.472637	
mm_105897.1	chr11	114982527	114982727	-	1	NA	NA	NA	7259	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.005000	0.482587	
mm_170170.1	chr17	55892003	55892203	+	1	NA	NA	NA	10	NM_145490	224893	Mm.294853	NM_145490	ENSMUSG00000003198	Zfp959	-	zinc finger protein 959	protein-coding	0.075000	0.641791	
mm_63419.1	chr7	127470993	127471193	+	1	NA	NA	NA	-521	NM_145589	233895	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.055000	0.626866	-31(GGCTTTAAAGAA,-,0.00)
mm_55226.1	chr6	52234721	52234921	-	1	NA	NA	NA	118	NM_008263	15395	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0.075000	0.636816	
mm_132987.1	chr16	52426071	52426271	+	1	NA	NA	NA	26910	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.383085	
mm_114926.1	chr13	95696760	95696960	+	1	NA	NA	NA	-60	NM_010170	14064	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	0.005000	0.517413	
mm_13705.1	chr2	117157385	117157585	+	1	NA	NA	NA	-27642	NR_030440	732489		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.000000	0.368159	83(GTTTATAGAGGA,+,0.00)
mm_1919.1	chr1	86026297	86026497	+	1	NA	NA	NA	4455	NM_027029	70060	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0.025000	0.527363	
mm_64585.1	chr7	145308243	145308443	+	1	NA	NA	NA	-6492	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	0.065000	0.601990	
mm_10083.1	chr1	195176678	195176878	-	1	NA	NA	NA	-63	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0.060000	0.636816	27(TGCTATTTAAGG,-,0.00)
mm_142977.1	chr17	56183813	56184013	-	1	NA	NA	NA	7	NM_080837	28106	Mm.294870	NM_080837	ENSMUSG00000019579	Mydgf	D17Wsu104e|Il25|Ly6elg	myeloid derived growth factor	protein-coding	0.135000	0.701493	
mm_87590.1	chr10	57486432	57486632	+	1	NA	NA	NA	147	NM_008297	15500	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	0.105000	0.641791	
mm_16347.1	chr2	174346225	174346425	+	1	NA	NA	NA	16236	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.050000	0.532338	
mm_49236.1	chr6	17281182	17281382	+	1	NA	NA	NA	97	NM_016900	12390	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	0.105000	0.746269	
mm_77977.1	chr9	7870628	7870828	+	1	NA	NA	NA	2442	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.010000	0.507463	-9(TCCTTTATAAGT,-,0.00)
mm_44902.1	chr5	35574965	35575165	-	1	NA	NA	NA	5	NM_030208	78890	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	0.090000	0.646766	
mm_84545.1	chr9	67327557	67327757	-	1	NA	NA	NA	-90931	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	0.010000	0.467662	
mm_79884.1	chr9	65265583	65265783	+	1	NA	NA	NA	503	NM_173385	214425	Mm.138455	NM_173385	ENSMUSG00000042254	Cilp	9830114D16|C130036G17Rik	cartilage intermediate layer protein, nucleotide pyrophosphohydrolase	protein-coding	0.010000	0.537313	
mm_41905.1	chr5	105579429	105579629	+	1	NA	NA	NA	60058	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.050000	0.522388	
mm_69301.1	chr7	128345982	128346182	-	1	NA	NA	NA	-47951	NM_145590	233913	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.005000	0.447761	
mm_44403.1	chr5	17842139	17842339	-	1	NA	NA	NA	-6343	NM_007643	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.010000	0.388060	
mm_28203.1	chr3	88296500	88296700	-	1	NA	NA	NA	238	NM_029801	76927	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	0.055000	0.482587	
mm_167632.1	chr9	62344806	62345006	-	1	NA	NA	NA	3563	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.060000	0.611940	
mm_32676.1	chr4	115775898	115776098	+	1	NA	NA	NA	5036	NM_029196	75173	Mm.331798	NM_029196	ENSMUSG00000044556	Tex38	4930544O15Rik|Theg4	testis expressed 38	protein-coding	0.000000	0.283582	
mm_87792.1	chr10	60299389	60299589	+	1	NA	NA	NA	15028	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.010000	0.497512	-57(GCCTTAAAACAC,+,0.00)
mm_63728.1	chr7	130865789	130865989	+	1	NA	NA	NA	-21	NM_133942	101476	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.140000	0.726368	
mm_96039.1	chr11	59556377	59556577	+	1	NA	NA	NA	13791	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.005000	0.447761	
mm_96753.1	chr11	69901771	69901971	+	1	NA	NA	NA	55	NM_001013414	216860	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	0.135000	0.786070	
mm_63242.1	chr7	126585512	126585712	+	1	NA	NA	NA	205	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.005000	0.577114	
mm_125851.1	chr15	74959128	74959328	+	1	NA	NA	NA	4122	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.015000	0.572139	
mm_45110.1	chr5	45450072	45450272	-	1	NA	NA	NA	57	NM_024236	110391	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	0.095000	0.671642	
mm_23673.1	chr3	68572438	68572638	+	1	NA	NA	NA	170	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.065000	0.621891	
mm_59427.1	chr7	27129139	27129339	+	1	NA	NA	NA	9284	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.040000	0.487562	
mm_150285.1	chr19	34309886	34310086	+	1	NA	NA	NA	19327	NM_001146708	14102	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	0.010000	0.393035	
mm_104573.1	chr11	96943884	96944084	-	1	NA	NA	NA	35	NM_134021	103711	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding	0.025000	0.532338	
mm_97570.1	chr11	78938087	78938287	+	1	NA	NA	NA	12896	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.000000	0.432836	
mm_42459.1	chr5	115436528	115436728	+	1	NA	NA	NA	6943	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.085000	0.666667	
mm_134174.1	chr16	10836412	10836612	-	1	NA	NA	NA	1453	NM_001162932	223970	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.015000	0.517413	
mm_80601.1	chr9	86545136	86545336	+	1	NA	NA	NA	26606	NM_001163746	109785	Mm.390201	NM_028352	ENSMUSG00000056131	Pgm3	2810473H05Rik|Agm1|BB187688|C77933|PAGM|Pgm-3	phosphoglucomutase 3	protein-coding	0.020000	0.477612	
mm_39628.1	chr5	24428158	24428358	+	1	NA	NA	NA	737	NM_001253892	20535	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0.045000	0.641791	
mm_68707.1	chr7	119793875	119794075	-	1	NA	NA	NA	83	NM_027698	71151	Mm.274160	NM_027698	ENSMUSG00000030929	Eri2	4933424N09Rik|Exod1|mKIAA1504	exoribonuclease 2	protein-coding	0.125000	0.676617	
mm_54861.1	chr6	42597294	42597494	-	1	NA	NA	NA	-22	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.015000	0.398010	
mm_130144.1	chr15	90940593	90940793	-	1	NA	NA	NA	-42217	NR_033583	20738	Mm.431547	NR_033583		Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.040000	0.472637	
mm_123113.1	chr14	55885903	55886103	-	1	NA	NA	NA	1061	NR_138134	219094	Mm.37592	NM_027143	ENSMUSG00000047153	Khnyn	6330555F21|9130227C08Rik|AI605259|Kiaa0323|mKIAA0323	KH and NYN domain containing	protein-coding	0.030000	0.557214	-34(CGTCCTAAAAGG,-,0.00),-13(AGCCCTAAAAGG,-,0.00)
mm_42988.1	chr5	123302403	123302603	+	1	NA	NA	NA	-41945	NM_029850	77045	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0.020000	0.482587	
mm_150921.1	chr19	46108838	46109038	+	1	NA	NA	NA	-22961	NM_007703	12686	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	0.020000	0.472637	
mm_106740.1	chr12	3906715	3906915	+	1	NA	NA	NA	15071	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.015000	0.497512	
mm_64190.1	chr7	141461021	141461221	+	1	NA	NA	NA	27	NM_001025103	213573	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.025000	0.651741	
mm_87297.1	chr10	42534556	42534756	+	1	NA	NA	NA	32602	NM_017472	54198	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.010000	0.353234	
mm_69188.1	chr7	127273045	127273245	-	1	NA	NA	NA	914	NM_009266	20768	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0.020000	0.467662	
mm_42244.1	chr5	113842049	113842249	+	1	NA	NA	NA	-11648	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.010000	0.517413	
mm_21254.1	chr2	156312252	156312452	-	1	NA	NA	NA	-121	NM_027585	70873	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	0.115000	0.721393	
mm_120431.1	chr14	65805772	65805972	+	1	NA	NA	NA	-39	NM_023209	52033	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	0.065000	0.547264	
mm_113199.1	chr13	24943486	24943686	+	1	NA	NA	NA	434	NM_008156	14756	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0.015000	0.522388	82(TGCTCTAAAAGC,-,0.00)
mm_110215.1	chr12	28623241	28623441	-	1	NA	NA	NA	-11	NM_027866	71693	Mm.30724	NM_027866	ENSMUSG00000036655	Colec11	CL-K1	collectin sub-family member 11	protein-coding	0.015000	0.567164	
mm_100502.1	chr11	120484941	120485141	+	1	NA	NA	NA	372	NM_027204	56282	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	0.050000	0.577114	
mm_42750.1	chr5	120754015	120754215	+	1	NA	NA	NA	-4267	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.005000	0.378109	
mm_127748.1	chr15	103470608	103470808	+	1	NA	NA	NA	16883	NM_153505	105855	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	0.005000	0.492537	
mm_78893.1	chr9	44607395	44607595	+	1	NA	NA	NA	2603	NM_181324	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.015000	0.577114	
mm_52206.1	chr6	100835184	100835384	+	1	NA	NA	NA	1646	NM_182939	232314	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	0.000000	0.328358	
mm_41169.1	chr5	87979345	87979545	+	1	NA	NA	NA	-6	NM_027631	70977	Mm.272787	NM_027631	ENSMUSG00000007907	Cabs1	4931407G18Rik|AI428159|Clph	calcium binding protein, spermatid specific 1	protein-coding	0.010000	0.507463	
mm_141896.1	chr17	34862404	34862604	-	1	NA	NA	NA	10	NM_001142706	14962	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0.000000	0.527363	
mm_144207.1	chr18	9505582	9505782	+	1	NA	NA	NA	-55532	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.000000	0.427861	
mm_3560.1	chr1	150424609	150424809	+	1	NA	NA	NA	-31654	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.025000	0.388060	-100(GTTTTAAAACAC,+,0.00)
mm_91530.1	chr10	37160400	37160600	-	1	NA	NA	NA	-21574	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.025000	0.388060	
mm_8966.1	chr1	165194197	165194397	-	1	NA	NA	NA	136	NM_145512	108735	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0.105000	0.681592	
mm_77722.1	chr8	126837201	126837401	-	1	NA	NA	NA	108620	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.010000	0.388060	
mm_3539.1	chr1	150393505	150393705	+	1	NA	NA	NA	-550	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.085000	0.601990	
mm_155388.1	chrX	71915497	71915697	+	1	NA	NA	NA	-16841	NR_027801	382221	Mm.295937	NM_001033470	ENSMUSG00000073130	Gm1141	Pasd1	predicted gene 1141	ncRNA	0.005000	0.393035	-80(CCTTTTAGGACC,+,0.00)
mm_29006.1	chr3	101592479	101592679	-	1	NA	NA	NA	12128	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.035000	0.572139	
mm_127821.1	chr15	5116258	5116458	-	1	NA	NA	NA	-255	NM_026069	67281	Mm.10474	NM_026069	ENSMUSG00000041841	Rpl37	3110005M08Rik	ribosomal protein L37	protein-coding	0.080000	0.676617	
mm_147976.1	chr18	67439350	67439550	-	1	NA	NA	NA	9686	NM_027130	69597	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	0.005000	0.333333	
mm_86534.1	chr10	7839600	7839800	+	1	NA	NA	NA	3319	NR_039563	100628581		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0.035000	0.557214	
mm_135968.1	chr16	74879351	74879551	-	1	NA	NA	NA	-468539	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.005000	0.343284	
mm_32039.1	chr4	95947051	95947251	+	1	NA	NA	NA	19884	NR_045777	319247	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0.005000	0.487562	
mm_101906.1	chr11	49243786	49243986	-	1	NA	NA	NA	-305	NM_010794	17308	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.105000	0.706468	
mm_90191.1	chr10	120201523	120201723	+	1	NA	NA	NA	-86	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.115000	0.691542	
mm_46731.1	chr5	110779840	110780040	-	1	NA	NA	NA	656	NM_019700	56361	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	0.025000	0.502488	-7(TTTTTTAAACCG,+,0.00)
mm_141083.1	chr17	25930420	25930620	-	1	NA	NA	NA	-10806	NM_139154	224624	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	0.010000	0.477612	
mm_75510.1	chr8	54525613	54525813	-	1	NA	NA	NA	4285	NM_029701	76687	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.005000	0.477612	
mm_85729.1	chr9	108340230	108340430	-	1	NA	NA	NA	1250	NM_001329528	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.015000	0.457711	
mm_107525.1	chr12	40465648	40465848	+	1	NA	NA	NA	19695	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.000000	0.422886	-44(CTCTTTAAAAAA,-,0.00)
mm_105967.1	chr11	115491078	115491278	-	1	NA	NA	NA	-351	NR_136931	102634812	Mm.390379	NR_136931		LOC102634812	-	ribosomal protein L39 pseudogene	pseudo	0.050000	0.592040	
mm_65722.1	chr7	28380183	28380383	-	1	NA	NA	NA	-1055	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.020000	0.407960	
mm_127436.1	chr15	101270175	101270375	+	1	NA	NA	NA	3429	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.045000	0.631841	
mm_149175.1	chr19	9135057	9135257	+	1	NA	NA	NA	409	NM_025610	66514	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	0.045000	0.616915	
mm_10462.1	chr2	14310802	14311002	+	1	NA	NA	NA	49899	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.000000	0.333333	
mm_102173.1	chr11	53980177	53980377	-	1	NA	NA	NA	-250	NM_019723	56517	Mm.154284	NM_019723	ENSMUSG00000063652	Slc22a21	Octn3|Slc22a9	solute carrier family 22 (organic cation transporter), member 21	protein-coding	0.075000	0.636816	
mm_48954.1	chr6	4540577	4540777	+	1	NA	NA	NA	35059	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.020000	0.402985	47(TCCTTTAAAAAA,-,0.00)
mm_157628.1	chrX	56597938	56598138	-	1	NA	NA	NA	-119	NM_146234	236792	Mm.291824	NM_146234	ENSMUSG00000061273	Mmgt1	9630048L06Rik|BC032271|Emc5|Mir5116|Tmem32|mir-5116	membrane magnesium transporter 1	protein-coding	0.095000	0.666667	
mm_41137.1	chr5	87825615	87825815	+	1	NA	NA	NA	18	NM_001163551	73779	Mm.263642	NM_028648	ENSMUSG00000002240	Prr27	4930432K09Rik	proline rich 27	protein-coding	0.010000	0.378109	
mm_19697.1	chr2	103760984	103761184	-	1	NA	NA	NA	166	NM_153126	98956	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.070000	0.601990	
mm_147345.1	chr18	43322367	43322567	-	1	NA	NA	NA	50805	NM_001136086	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.005000	0.383085	
mm_56669.1	chr6	113639270	113639470	-	1	NA	NA	NA	903	NM_001113553	108960	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.005000	0.492537	
mm_87910.1	chr10	62300460	62300660	+	1	NA	NA	NA	39861	NM_001146100	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.025000	0.557214	
mm_96452.1	chr11	67564382	67564582	+	1	NA	NA	NA	-22018	NM_001109657	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.015000	0.502488	
mm_88900.1	chr10	81173215	81173415	+	1	NA	NA	NA	-3316	NM_007907	13629	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0.090000	0.616915	
mm_16072.1	chr2	168125613	168125813	+	1	NA	NA	NA	28800	NR_040327	77017	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	0.005000	0.452736	
mm_126959.1	chr15	92321789	92321989	+	1	NA	NA	NA	-74921	NM_001164593	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding	0.010000	0.512438	
mm_100274.1	chr11	117762406	117762606	+	1	NA	NA	NA	18115	NM_181321	217353	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.030000	0.467662	
mm_55673.1	chr6	72552125	72552325	-	1	NA	NA	NA	2578	NM_001271395	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.020000	0.462687	
mm_44716.1	chr5	30945574	30945774	-	1	NA	NA	NA	-194	NM_026770	68567	Mm.45127	NM_026770	ENSMUSG00000029161	Cgref1	1110004G24Rik|AW045201|Cgr11	cell growth regulator with EF hand domain 1	protein-coding	0.025000	0.537313	
mm_55725.1	chr6	74025646	74025846	-	1	NA	NA	NA	-554725	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.005000	0.388060	
mm_127131.1	chr15	98165642	98165842	+	1	NA	NA	NA	-164	NM_001170711	78541	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0.020000	0.507463	
mm_128329.1	chr15	38294881	38295081	-	1	NA	NA	NA	5730	NM_013692	21847	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.010000	0.318408	
mm_156596.1	chrX	152251178	152251378	+	1	NA	NA	NA	18051	NM_013668	20591	Mm.142655	NM_013668	ENSMUSG00000025332	Kdm5c	D930009K15Rik|Jarid1c|Smcx|mKIAA0234	lysine (K)-specific demethylase 5C	protein-coding	0.000000	0.248756	
mm_76912.1	chr8	105932306	105932506	-	1	NA	NA	NA	1456	NM_023182	109660	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.025000	0.577114	
mm_94029.1	chr10	127751645	127751845	-	1	NA	NA	NA	53	NM_007412	11536	Mm.2857	NM_007412	ENSMUSG00000058396	Gpr182	AM-R|Admr|G10-D|Gpcr17|Gpcr22|MB10|NOW	G protein-coupled receptor 182	protein-coding	0.020000	0.592040	
mm_77098.1	chr8	110997702	110997902	-	1	NA	NA	NA	21	NM_007916	13680	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	0.130000	0.681592	
mm_109212.1	chr12	108677657	108677857	+	1	NA	NA	NA	19137	NR_029771	723909		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.005000	0.442786	
mm_60916.1	chr7	46830917	46831117	+	1	NA	NA	NA	-14787	NM_010699	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.025000	0.502488	
mm_47618.1	chr5	125179092	125179292	-	1	NA	NA	NA	22	NM_001253905	20602	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.180000	0.830846	-86(GGCCCTTTAAGG,-,0.00),-85(GCCCTTTAAGGC,-,0.00),-84(CCCTTTAAGGCG,+,0.00),-83(CCTTTAAGGCGG,+,0.00)
mm_81119.1	chr9	106460594	106460794	+	1	NA	NA	NA	5246	NM_001159652	436090	Mm.482905	NM_001159652	ENSMUSG00000091735	Gpr62	4933402E03Rik	G protein-coupled receptor 62	protein-coding	0.050000	0.636816	
mm_61498.1	chr7	75753421	75753621	+	1	NA	NA	NA	-94817	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.035000	0.512438	
mm_21622.1	chr2	164276980	164277180	-	1	NA	NA	NA	1227	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.020000	0.422886	
mm_63836.1	chr7	135537752	135537952	+	1	NA	NA	NA	28	NM_001316678	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.100000	0.736318	
mm_129664.1	chr15	81190644	81190844	-	1	NA	NA	NA	13	NM_001082536	223701	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.115000	0.716418	
mm_161580.1	chr16	31429335	31429535	+	1	NA	NA	NA	682	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.065000	0.601990	6(CCTTAACAAGGC,+,0.00)
mm_170657.1	chr2	105948896	105949096	-	1	NA	NA	NA	44358	NM_028260	66541	Mm.272253	NM_028260	ENSMUSG00000042670	Immp1l	1500034J20Rik|2610528O17Rik|AU042386	IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.045000	0.557214	-18(GGTCTTAAAAGG,-,0.00),-17(GTCTTAAAAGGC,+,0.00)
mm_18154.1	chr2	45090742	45090942	-	1	NA	NA	NA	19435	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.010000	0.407960	
mm_100473.1	chr11	120040969	120041169	+	1	NA	NA	NA	712	NM_001198787	11302	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0.015000	0.527363	
mm_52780.1	chr6	121249277	121249477	+	1	NA	NA	NA	3471	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.000000	0.383085	-54(CAGTTTAAAAGA,-,0.00)
mm_58433.1	chr7	3297502	3297702	+	1	NA	NA	NA	4574	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.045000	0.522388	
mm_170506.1	chr19	24875548	24875748	+	1	NA	NA	NA	-13806	NM_175013	226041	Mm.105222	NM_175013	ENSMUSG00000041731	Pgm5	4833423B07|9530034F03Rik|D830025G17|aciculin	phosphoglucomutase 5	protein-coding	0.075000	0.522388	
mm_35966.1	chr4	53144001	53144201	-	1	NA	NA	NA	15794	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.035000	0.552239	
mm_11521.1	chr2	32608966	32609166	+	1	NA	NA	NA	2081	NR_110347	50935	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.015000	0.522388	
mm_85404.1	chr9	103365506	103365706	-	1	NA	NA	NA	174	NM_175833	321022	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.135000	0.756219	
mm_56430.1	chr6	97312182	97312382	-	1	NA	NA	NA	-59502	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.030000	0.497512	
mm_142124.1	chr17	35897212	35897412	-	1	NA	NA	NA	66	NM_001033630	69662	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	0.135000	0.756219	
mm_75031.1	chr8	32009375	32009575	-	1	NA	NA	NA	-91272	NM_178591	211323	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding	0.095000	0.651741	
mm_3150.1	chr1	135147549	135147749	+	1	NA	NA	NA	815	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.045000	0.621891	31(CACCATAAAGGG,-,0.00)
mm_141627.1	chr17	32916983	32917183	-	1	NA	NA	NA	4	NM_022434	64385	Mm.486449	NM_022434	ENSMUSG00000024292	Cyp4f14	1300014O15Rik|cyp4f-14	cytochrome P450, family 4, subfamily f, polypeptide 14	protein-coding	0.000000	0.457711	
mm_103264.1	chr11	71144707	71144907	-	1	NA	NA	NA	-103	NM_001004142	195046	Mm.240227	NM_001004142	ENSMUSG00000069830	Nlrp1a	CARD7|DEFCAP|Gm14|Gm15|NAC|Nalp1|Nalp1a|Nlrp1|PP1044	NLR family, pyrin domain containing 1A	protein-coding	0.010000	0.507463	
mm_39283.1	chr5	3936420	3936620	+	1	NA	NA	NA	8334	NM_194462	100986	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	0.005000	0.303483	
mm_28238.1	chr3	88458776	88458976	-	1	NA	NA	NA	8	NM_001163491	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.030000	0.587065	
mm_124376.1	chr14	106267655	106267855	-	1	NA	NA	NA	161557	NR_073203	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0.010000	0.422886	-91(GACTCTAAATGG,-,0.00)
mm_66887.1	chr7	59244170	59244370	-	1	NA	NA	NA	15518	NM_011668	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|mKIAA4216	ubiquitin protein ligase E3A	protein-coding	0.000000	0.288557	
mm_113827.1	chr13	47043793	47043993	+	1	NA	NA	NA	394	NM_172262	218214	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	0.115000	0.741294	
mm_159362.1	chr3	87687807	87688007	+	1	NA	NA	NA	60716	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding	0.015000	0.542289	
mm_14429.1	chr2	130541209	130541409	+	1	NA	NA	NA	22440	NR_040348	321014	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	0.045000	0.587065	
mm_61691.1	chr7	81057496	81057696	+	1	NA	NA	NA	-4	NM_054085	116904	Mm.475768	NM_054085	ENSMUSG00000038763	Alpk3	AW319487|D330016D04|MAK|Midori|mKIAA1330	alpha-kinase 3	protein-coding	0.075000	0.706468	
mm_27687.1	chr3	65974594	65974794	-	1	NA	NA	NA	-16469	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.075000	0.626866	
mm_169100.1	chr1	34163550	34163750	+	1	NA	NA	NA	3320	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.010000	0.407960	
mm_36111.1	chr4	58878757	58878957	-	1	NA	NA	NA	33868	NM_172381	230249	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|mKIAA0368	expressed sequence AI314180	protein-coding	0.000000	0.298507	
mm_142618.1	chr17	46880430	46880630	-	1	NA	NA	NA	-10091	NM_178385	72726	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0.005000	0.318408	
mm_3309.1	chr1	137898620	137898820	+	1	NA	NA	NA	-67735	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.045000	0.517413	
mm_58676.1	chr7	11899835	11900035	+	1	NA	NA	NA	19592	NM_134207	171241	Mm.377197	NM_134207	ENSMUSG00000043308	Vmn1r75	V1rg6	vomeronasal 1 receptor 75	protein-coding	0.000000	0.383085	
mm_15612.1	chr2	160757061	160757261	+	1	NA	NA	NA	25851	NM_021280	18803	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.020000	0.532338	
mm_146972.1	chr18	33463739	33463939	-	1	NA	NA	NA	-140	NM_001109989	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.125000	0.706468	
mm_15562.1	chr2	158512709	158512909	+	1	NA	NA	NA	13	NM_001145015	545481	Mm.125371	NM_001145015	ENSMUSG00000074625	Arhgap40	C20orf95|Gm14203|OTTMUSG00000015933	Rho GTPase activating protein 40	protein-coding	0.025000	0.626866	
mm_84690.1	chr9	72271226	72271426	-	1	NA	NA	NA	-3562	NM_146224	235469	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	0.000000	0.417910	
mm_148390.1	chr19	3388827	3389027	+	1	NA	NA	NA	70	NM_001039657	17771	Mm.209941	NM_010841	ENSMUSG00000024905	Mtl5	tesmin	metallothionein-like 5, testis-specific (tesmin)	protein-coding	0.120000	0.686567	
mm_142241.1	chr17	37482373	37482573	-	1	NA	NA	NA	1056	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.010000	0.492537	
mm_65200.1	chr7	19696810	19697010	-	1	NA	NA	NA	1488	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.090000	0.646766	
mm_44714.1	chr5	30945509	30945709	-	1	NA	NA	NA	-129	NM_026770	68567	Mm.45127	NM_026770	ENSMUSG00000029161	Cgref1	1110004G24Rik|AW045201|Cgr11	cell growth regulator with EF hand domain 1	protein-coding	0.045000	0.616915	
mm_974.1	chr1	58393033	58393233	+	1	NA	NA	NA	-3	NM_025824	66882	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.110000	0.661692	
mm_110294.1	chr12	32208435	32208635	-	1	NA	NA	NA	-65	NM_020272	30955	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphoinositide-3-kinase, catalytic, gamma polypeptide	protein-coding	0.025000	0.452736	
mm_147575.1	chr18	56419013	56419213	-	1	NA	NA	NA	-13019	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.010000	0.402985	
mm_162143.1	chrX	74393190	74393390	+	1	NA	NA	NA	-1	NM_001161424	16151	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	0.040000	0.621891	
mm_100537.1	chr11	120633089	120633289	+	1	NA	NA	NA	358	NM_010756	17134	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.145000	0.756219	
mm_42187.1	chr5	112269361	112269561	+	1	NA	NA	NA	-7230	NM_001326590	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.070000	0.681592	
mm_171660.1	chr4	44065762	44065962	-	1	NA	NA	NA	6811	NM_001190414	50798	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	0.030000	0.592040	
mm_111244.1	chr12	84801710	84801910	-	1	NA	NA	NA	28540	NM_028863	74316	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0.010000	0.582090	
mm_106147.1	chr11	116579529	116579729	-	1	NA	NA	NA	1818	NM_173755	217342	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	0.005000	0.472637	
mm_57288.1	chr6	124433336	124433536	-	1	NA	NA	NA	-18369	NM_001277805	19305	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1R|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0.020000	0.542289	
mm_129021.1	chr15	74955402	74955602	-	1	NA	NA	NA	396	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.060000	0.671642	
mm_68301.1	chr7	105745673	105745873	-	1	NA	NA	NA	-1435	NM_020024	24075	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	0.000000	0.432836	
mm_102848.1	chr11	69369594	69369794	-	1	NA	NA	NA	-268	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.025000	0.398010	
mm_19907.1	chr2	114175208	114175408	-	1	NA	NA	NA	31	NM_009702	11834	Mm.2545	NM_009702	ENSMUSG00000040383	Aqr	AW495846|mKIAA0560	aquarius	protein-coding	0.075000	0.611940	
mm_28362.1	chr3	89870122	89870322	-	1	NA	NA	NA	38852	NM_172530	214547	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.020000	0.437811	-60(GTTTTTAGAGAA,+,0.00)
mm_55614.1	chr6	72042471	72042671	-	1	NA	NA	NA	-43	NR_046180	330350	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0.020000	0.467662	
mm_13664.1	chr2	114061090	114061290	+	1	NA	NA	NA	6794	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.000000	0.323383	
mm_21146.1	chr2	154363943	154364143	-	1	NA	NA	NA	8676	NM_025876	66971	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	0.010000	0.482587	
mm_52977.1	chr6	123260431	123260631	+	1	NA	NA	NA	-1576	NM_001163161	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.000000	0.437811	
mm_91132.1	chr10	19598076	19598276	-	1	NA	NA	NA	6227	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.030000	0.457711	
mm_41991.1	chr5	107726054	107726254	+	1	NA	NA	NA	-349	NM_001267621	14581	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.030000	0.597015	
mm_77655.1	chr8	124569605	124569805	-	1	NA	NA	NA	2	NM_007428	11606	Mm.301626	NM_007428	ENSMUSG00000031980	Agt	AI265500|AngI|AngII|Aogen|Serpina8	angiotensinogen (serpin peptidase inhibitor, clade A, member 8)	protein-coding	0.005000	0.547264	
mm_133902.1	chr16	97548532	97548732	+	1	NA	NA	NA	12549	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.005000	0.368159	
mm_79830.1	chr9	64790862	64791062	+	1	NA	NA	NA	-20049	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.020000	0.432836	
mm_81769.1	chr9	114410913	114411113	+	1	NA	NA	NA	9918	NM_001200002	100504715	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	0.015000	0.432836	
mm_88893.1	chr10	81139409	81139609	+	1	NA	NA	NA	3238	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.020000	0.592040	
mm_3991.1	chr1	164443143	164443343	+	1	NA	NA	NA	15112	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.030000	0.507463	
mm_84987.1	chr9	86464851	86465051	-	1	NA	NA	NA	-35	NM_027394	70348	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	0.100000	0.681592	
mm_133587.1	chr16	91421685	91421885	+	1	NA	NA	NA	15550	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.020000	0.527363	
mm_116934.1	chr13	55831287	55831487	-	1	NA	NA	NA	38	NM_011097	18740	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.115000	0.776119	
mm_93411.1	chr10	108442950	108443150	-	1	NA	NA	NA	110861	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.020000	0.512438	
mm_96786.1	chr11	69965402	69965602	+	1	NA	NA	NA	81	NM_016887	53624	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	0.105000	0.726368	
mm_21116.1	chr2	153492461	153492661	-	1	NA	NA	NA	37410	NM_001134300	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.125000	0.820896	
mm_18413.1	chr2	60673549	60673749	-	1	NA	NA	NA	44	NM_021359	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.005000	0.358209	-96(TTCCTTATAAGG,-,0.00),-94(CCTTATAAGGTG,+,0.00),-56(GCTTTTAAACAC,+,0.00)
mm_76439.1	chr8	84990819	84991019	-	1	NA	NA	NA	324	NM_001167991	170833	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	0.040000	0.606965	
mm_58282.1	chr6	145862557	145862757	-	1	NA	NA	NA	2763	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.025000	0.492537	
mm_135891.1	chr16	64873836	64874036	-	1	NA	NA	NA	21851	NM_178647	106143	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.030000	0.522388	
mm_71719.1	chr8	61951722	61951922	+	1	NA	NA	NA	23735	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.010000	0.442786	
mm_62948.1	chr7	119580832	119581032	+	1	NA	NA	NA	19224	NM_001177978	233799	Mm.268448	NM_146197	ENSMUSG00000030945	Acsm2	AI315615|BC031140	acyl-CoA synthetase medium-chain family member 2	protein-coding	0.005000	0.432836	
mm_1469.1	chr1	69826895	69827095	+	1	NA	NA	NA	25	NM_001271533	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	0.095000	0.711443	
mm_150108.1	chr19	29522318	29522518	+	1	NA	NA	NA	136	NM_001081319	226089	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0.180000	0.825871	
mm_76977.1	chr8	106573362	106573562	-	1	NA	NA	NA	-13681	NR_045470	68692	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0.050000	0.492537	
mm_122937.1	chr14	54963843	54964043	-	1	NA	NA	NA	2664	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.050000	0.562189	-91(GACCATAAAGGA,-,0.00)
mm_5711.1	chr1	43827633	43827833	-	1	NA	NA	NA	-25	NM_026430	67883	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.120000	0.731343	
mm_48093.1	chr5	137045956	137046156	-	1	NA	NA	NA	4	NM_007457	11769	Mm.833	NM_007457	ENSMUSG00000004849	Ap1s1	AP19	adaptor protein complex AP-1, sigma 1	protein-coding	0.075000	0.671642	
mm_126500.1	chr15	81745080	81745280	+	1	NA	NA	NA	332	NM_001081016	20286	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	0.095000	0.587065	
mm_17648.1	chr2	31492254	31492454	-	1	NA	NA	NA	22046	NR_002687	432466	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.010000	0.557214	
mm_44205.1	chr5	3803000	3803200	-	1	NA	NA	NA	24	NM_001289528	70797	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	0.145000	0.726368	
mm_173114.1	chrX	159510710	159510910	-	1	NA	NA	NA	-21858	NM_001033472	382252	Mm.296254	NM_001033472	ENSMUSG00000044150	A830080D01Rik	2310067E24Rik|Gm1146	RIKEN cDNA A830080D01 gene	protein-coding	0.030000	0.562189	
mm_130535.1	chr15	98934507	98934707	-	1	NA	NA	NA	-217	NM_011654	22143	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.150000	0.796020	
mm_67750.1	chr7	92618876	92619076	-	1	NA	NA	NA	18166	NM_028665	73845	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	0.005000	0.368159	-95(TTGTATATAAAG,-,0.00)
mm_51716.1	chr6	86849349	86849549	+	1	NA	NA	NA	-9	NR_028298	67170	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	0.120000	0.716418	
mm_157859.1	chrX	75111901	75112101	-	1	NA	NA	NA	16147	NM_001030307	245474	Mm.291062	NM_001030307	ENSMUSG00000031403	Dkc1	BC068171	dyskeratosis congenita 1, dyskerin	protein-coding	0.010000	0.447761	
mm_115375.1	chr13	113086142	113086342	+	1	NA	NA	NA	14739	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.010000	0.457711	
mm_58298.1	chr6	145865410	145865610	-	1	NA	NA	NA	-90	NM_024469	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.140000	0.731343	
mm_42471.1	chr5	115454396	115454596	+	1	NA	NA	NA	-11770	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.020000	0.626866	
mm_37738.1	chr4	129578415	129578615	-	1	NA	NA	NA	65	NM_182783	230766	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	0.020000	0.512438	
mm_25846.1	chr3	129461848	129462048	+	1	NA	NA	NA	28275	NR_033594	435755	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	0.025000	0.537313	
mm_13958.1	chr2	121359176	121359376	+	1	NA	NA	NA	635	NM_009897	12716	Mm.252145	NM_009897	ENSMUSG00000000308	Ckmt1	Mt-CK|ScCKmit|UbCKmit|mi-CK	creatine kinase, mitochondrial 1, ubiquitous	protein-coding	0.010000	0.427861	
mm_78813.1	chr9	44069370	44069570	+	1	NA	NA	NA	41	NM_016808	53376	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.025000	0.537313	
mm_121340.1	chr14	115201490	115201690	+	1	NA	NA	NA	109375	NM_175500	103978	Mm.320791	NM_175500	ENSMUSG00000022112	Gpc5	A230034F01Rik	glypican 5	protein-coding	0.000000	0.427861	
mm_90450.1	chr10	127703391	127703591	+	1	NA	NA	NA	-1765	NM_001081219	432516	Mm.90450	NM_001081219	ENSMUSG00000025401	Myo1a	BBM-I|Myhl	myosin IA	protein-coding	0.010000	0.567164	
mm_105774.1	chr11	109721610	109721810	-	1	NA	NA	NA	546	NM_153782	208659	Mm.208662	NM_153782	ENSMUSG00000020614	Fam20a	AI606893	family with sequence similarity 20, member A	protein-coding	0.065000	0.671642	
mm_167343.1	chr8	77955760	77955960	+	1	NA	NA	NA	-231408	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	0.035000	0.482587	
mm_48957.1	chr6	4540770	4540970	+	1	NA	NA	NA	35252	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.000000	0.407960	
mm_113783.1	chr13	45507438	45507638	+	1	NA	NA	NA	94	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.135000	0.751244	
mm_6150.1	chr1	64937730	64937930	-	1	NA	NA	NA	18994	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.035000	0.542289	
mm_155710.1	chrX	96095945	96096145	+	1	NA	NA	NA	0	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.105000	0.691542	
mm_138549.1	chr17	35263952	35264152	+	1	NA	NA	NA	929	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.090000	0.661692	
mm_72376.1	chr8	81342512	81342712	+	1	NA	NA	NA	50	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.115000	0.721393	65(CGCTATAAATAG,-,0.00)
mm_90382.1	chr10	127287983	127288183	+	1	NA	NA	NA	935	NM_001347171	110962	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.005000	0.527363	-34(TCATATAAAAAG,-,0.00)
mm_41094.1	chr5	87694578	87694778	+	1	NA	NA	NA	4747	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.502488	
mm_33560.1	chr4	131873591	131873791	+	1	NA	NA	NA	52	NM_020587	57317	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0.180000	0.791045	
mm_147013.1	chr18	34522939	34523139	-	1	NA	NA	NA	-16216	NM_146084	225358	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	0.015000	0.517413	
mm_137267.1	chr17	24696562	24696762	+	1	NA	NA	NA	428	NM_027988	71893	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	0.045000	0.527363	
mm_160095.1	chr7	18176526	18176726	+	1	NA	NA	NA	132	NM_001003393	232925	Mm.37237	NM_001003393	ENSMUSG00000066756	Igfl3	Gm580|Igfl|Rprc483	IGF-like family member 3	protein-coding	0.000000	0.383085	
mm_13087.1	chr2	91210732	91210932	+	1	NA	NA	NA	7920	NM_007387	11432	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.025000	0.582090	
mm_156358.1	chrX	139335819	139336019	+	1	NA	NA	NA	2236	NM_011635	22037	Mm.1297	NM_011635	ENSMUSG00000051257	Trap1a	Tra-P1A	tumor rejection antigen P1A	protein-coding	0.005000	0.552239	
mm_61066.1	chr7	50599111	50599311	+	1	NA	NA	NA	21	NM_172901	243996	Mm.443270	NM_172901	ENSMUSG00000084234	4933405O20Rik	-	RIKEN cDNA 4933405O20 gene	protein-coding	0.005000	0.422886	
mm_75760.1	chr8	69924697	69924897	-	1	NA	NA	NA	-22239	NM_023312	67184	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.000000	0.417910	75(GGGTTTAAAAGT,-,0.00)
mm_159585.1	chr4	121423001	121423201	-	1	NA	NA	NA	-2	NM_001144948	666921	Mm.477980	NM_001144948	ENSMUSG00000078576	Gm12886	OTTMUSG00000008908	predicted gene 12886	protein-coding	0.005000	0.537313	
mm_5852.1	chr1	53296878	53297078	-	1	NA	NA	NA	50	NM_153556	227099	Mm.60499	NM_153556	ENSMUSG00000026098	Pms1	-	postmeiotic segregation increased 1 (S. cerevisiae)	protein-coding	0.095000	0.646766	
mm_24033.1	chr3	87620820	87621020	+	1	NA	NA	NA	2169	NM_001003912	213498	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	B930073M02|E130307F09|PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	0.010000	0.393035	
mm_51204.1	chr6	71325409	71325609	+	1	NA	NA	NA	2697	NM_009858	12526	Mm.333148	NM_009858	ENSMUSG00000053044	Cd8b1	Cd8b|Ly-3|Ly-C|Lyt-3	CD8 antigen, beta chain 1	protein-coding	0.005000	0.552239	
mm_133945.1	chr16	3929122	3929322	-	1	NA	NA	NA	20213	NM_029738	76779	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	0.020000	0.527363	
mm_27797.1	chr3	75655638	75655838	-	1	NA	NA	NA	-7	NR_040539	69193	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	0.005000	0.522388	72(TCCTTTATAAAG,-,0.00),74(CTTTATAAAGTG,+,0.00)
mm_24464.1	chr3	90654038	90654238	+	1	NA	NA	NA	-164	NM_199422	381493	Mm.291525	NM_199422	ENSMUSG00000063767	S100a7a	AY465109|Gm1020|S100A7L1|S100A7f|S100a15|S100a15a|S100a17l1	S100 calcium binding protein A7A	protein-coding	0.010000	0.497512	
mm_77315.1	chr8	117714123	117714323	-	1	NA	NA	NA	12277	NM_008290	15486	Mm.276466	NM_008290	ENSMUSG00000031844	Hsd17b2	AI194836|AI194967|AI255511	hydroxysteroid (17-beta) dehydrogenase 2	protein-coding	0.015000	0.532338	
mm_116404.1	chr13	41424970	41425170	-	1	NA	NA	NA	62290	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.005000	0.462687	
mm_63397.1	chr7	127296206	127296406	+	1	NA	NA	NA	46	NM_001253874	16408	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.015000	0.557214	
mm_151524.1	chr19	58741001	58741201	+	1	NA	NA	NA	12214	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.020000	0.422886	
mm_114634.1	chr13	76384103	76384303	+	1	NA	NA	NA	-758	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.095000	0.716418	
mm_166838.1	chr7	19271688	19271888	-	1	NA	NA	NA	66	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.080000	0.606965	-99(GCCCCTTTAAGG,-,0.00),-98(CCCCTTTAAGGC,-,0.00),-97(CCCTTTAAGGCG,+,0.00),-96(CCTTTAAGGCGC,+,0.00)
mm_126191.1	chr15	78670575	78670775	+	1	NA	NA	NA	47438	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0.005000	0.572139	
mm_47298.1	chr5	122264317	122264517	-	1	NA	NA	NA	43	NR_104441	654470	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.080000	0.651741	
mm_8819.1	chr1	162134619	162134819	-	1	NA	NA	NA	-82904	NR_002870	474332	Mm.479755	NR_002870	ENSMUSG00000078190	Dnm3os	6030416H16Rik|Hag2|Npn1|P/L01	dynamin 3, opposite strand	ncRNA	0.010000	0.457711	
mm_17665.1	chr2	32083690	32083890	-	1	NA	NA	NA	-85	NM_175511	241303	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.120000	0.721393	
mm_61209.1	chr7	64185401	64185601	+	1	NA	NA	NA	42	NM_018752	17364	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.020000	0.616915	17(TCCTCTTAAAGA,-,0.00),18(CCTCTTAAAGAG,+,0.00)
mm_148409.1	chr19	3907354	3907554	+	1	NA	NA	NA	-321	NM_001136091	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.015000	0.592040	
mm_56057.1	chr6	86765794	86765994	-	1	NA	NA	NA	9220	NM_001331120	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.020000	0.477612	
mm_157263.1	chrX	19168170	19168370	-	1	NA	NA	NA	-21299	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.000000	0.452736	
mm_165437.1	chr2	153982829	153983029	+	1	NA	NA	NA	7984	NM_001080811	545477	Mm.379973	NM_001080811	ENSMUSG00000078998	Bpifa6	EG545477|Gm5840|Splunc6	BPI fold containing family A, member 6	protein-coding	0.020000	0.492537	
mm_58478.1	chr7	3423506	3423706	+	1	NA	NA	NA	-161	NR_126426	70230	Mm.458356	NR_126426	ENSMUSG00000107585	3300002P13Rik	-	RIKEN cDNA 3300002P13 gene	ncRNA	0.095000	0.666667	
mm_87481.1	chr10	51493731	51493931	+	1	NA	NA	NA	2933	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.383085	
mm_81803.1	chr9	116197869	116198069	+	1	NA	NA	NA	-22606	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.030000	0.467662	
mm_150936.1	chr19	46305852	46306052	+	1	NA	NA	NA	22	NM_001177370	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.040000	0.597015	
mm_111152.1	chr12	83122018	83122218	-	1	NA	NA	NA	-182963	NR_046045	74283	Mm.398247	NR_046045	ENSMUSG00000100890	1700085C21Rik	-	RIKEN cDNA 1700085C21 gene	ncRNA	0.000000	0.373134	
mm_25412.1	chr3	107342793	107342993	+	1	NA	NA	NA	-9604	NM_001045807	229700	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.030000	0.537313	-12(GTCTTGAAAGGG,-,0.00)
mm_24972.1	chr3	96750979	96751179	+	1	NA	NA	NA	23468	NM_026406	67845	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.000000	0.442786	
mm_235.1	chr1	19104591	19104791	+	1	NA	NA	NA	1669	NM_153154	226896	Mm.244858	NM_153154	ENSMUSG00000042596	Tfap2d	Tcfap2d	transcription factor AP-2, delta	protein-coding	0.055000	0.587065	
mm_140432.1	chr17	88130578	88130778	+	1	NA	NA	NA	5166	NM_001190356	225058	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.020000	0.477612	-26(TCCTTTTTAAGA,-,0.00)
mm_20229.1	chr2	125789380	125789580	-	1	NA	NA	NA	-6610	NM_177608	70354	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.005000	0.422886	
mm_146032.1	chr18	69521665	69521865	+	1	NA	NA	NA	176044	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.010000	0.492537	
mm_146281.1	chr18	77882508	77882708	+	1	NA	NA	NA	-55859	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.000000	0.447761	
mm_162327.1	chr1	40266448	40266648	+	1	NA	NA	NA	-38	NM_001123382	16177	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.065000	0.656716	
mm_103301.1	chr11	72550137	72550337	-	1	NA	NA	NA	9	NM_029932	77577	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	0.010000	0.562189	
mm_168638.1	chr1	184165759	184165959	+	1	NA	NA	NA	131398	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.000000	0.507463	
mm_67323.1	chr7	79721147	79721347	-	1	NA	NA	NA	-7061	NM_001291222	16576	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0.035000	0.457711	61(AACTATAAAAGC,-,0.00)
mm_65682.1	chr7	28338653	28338853	-	1	NA	NA	NA	-34	NM_013676	20924	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0.105000	0.681592	
mm_43017.1	chr5	123907282	123907482	+	1	NA	NA	NA	107	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.125000	0.751244	
mm_19441.1	chr2	91965481	91965681	-	1	NA	NA	NA	-2018	NM_138306	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.060000	0.696517	
mm_103915.1	chr11	83588702	83588902	-	1	NA	NA	NA	4285	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.015000	0.492537	46(GTTTTTATAGAT,+,0.00)
mm_35694.1	chr4	44129024	44129224	-	1	NA	NA	NA	7231	NR_040414	623796	Mm.490409	NR_040414	ENSMUSG00000084274	Gm12504	OTTMUSG00000007209	prothymosin alpha pseudogene	pseudo	0.005000	0.417910	
mm_4037.1	chr1	165774270	165774470	+	1	NA	NA	NA	10590	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.035000	0.532338	
mm_47052.1	chr5	116288861	116289061	-	1	NA	NA	NA	24	NM_177759	269693	Mm.10946	NM_177759	ENSMUSG00000043913	Ccdc60	AU018954|C130098D09	coiled-coil domain containing 60	protein-coding	0.065000	0.542289	
mm_56674.1	chr6	113696603	113696803	-	1	NA	NA	NA	-347	NM_001347356	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.025000	0.467662	
mm_157703.1	chrX	60893339	60893539	-	1	NA	NA	NA	-9	NM_009237	20675	Mm.35784	NM_009237	ENSMUSG00000045179	Sox3	Sox-3	SRY (sex determining region Y)-box 3	protein-coding	0.090000	0.661692	-33(AGGTATATAAGG,-,0.00)
mm_53612.1	chr6	139841555	139841755	+	1	NA	NA	NA	210	NM_011084	18705	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	protein-coding	0.015000	0.482587	-57(CATTTTATGGGC,+,0.00)
mm_17655.1	chr2	32064974	32065174	-	1	NA	NA	NA	14128	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	0.040000	0.621891	
mm_48384.1	chr5	139775556	139775756	-	1	NA	NA	NA	22	NM_026748	68510	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	0.080000	0.611940	
mm_88797.1	chr10	80692608	80692808	+	1	NA	NA	NA	9112	NM_172457	208228	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.015000	0.547264	
mm_15609.1	chr2	160740895	160741095	+	1	NA	NA	NA	9685	NM_021280	18803	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.025000	0.537313	
mm_34558.1	chr4	149635146	149635346	+	1	NA	NA	NA	20321	NR_105990	102465983		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.035000	0.512438	
mm_131267.1	chr16	10835397	10835597	+	1	NA	NA	NA	438	NM_001162932	223970	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.045000	0.651741	
mm_32304.1	chr4	103134746	103134946	+	1	NA	NA	NA	15456	NM_001039081	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.010000	0.398010	
mm_75905.1	chr8	71273048	71273248	-	1	NA	NA	NA	434	NM_001142323	17925	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0.055000	0.611940	
mm_114278.1	chr13	58274166	58274366	+	1	NA	NA	NA	-78	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.175000	0.805970	
mm_172015.1	chr6	111462594	111462794	+	1	NA	NA	NA	-748014	NR_027865	67336	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA	0.035000	0.487562	
mm_145943.1	chr18	67363675	67363875	+	1	NA	NA	NA	-19672	NR_033214	338360	Mm.441590	NR_033214	ENSMUSG00000046415	B430212C06Rik	-	RIKEN cDNA B430212C06 gene	ncRNA	0.010000	0.457711	
mm_24960.1	chr3	96696339	96696539	+	1	NA	NA	NA	64	NM_146135	229615	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	0.090000	0.726368	
mm_88100.1	chr10	68751161	68751361	+	1	NA	NA	NA	27515	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.025000	0.492537	
mm_147844.1	chr18	63386419	63386619	-	1	NA	NA	NA	664	NM_001039485	667742	Mm.158720	NM_172629	ENSMUSG00000041482	Piezo2	5930434P17|9030411M15Rik|9430028L06Rik|Fam38b|Fam38b2	piezo-type mechanosensitive ion channel component 2	protein-coding	0.080000	0.706468	
mm_163735.1	chr13	119690292	119690492	+	1	NA	NA	NA	41	NM_001291439	208715	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	0.095000	0.671642	
mm_63914.1	chr7	139235751	139235951	+	1	NA	NA	NA	-12631	NM_001033206	101631	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.010000	0.542289	
mm_46225.1	chr5	99021497	99021697	-	1	NA	NA	NA	15482	NM_008926	19092	Mm.263002	NM_008926	ENSMUSG00000029334	Prkg2	AW212535|CGKII|Prkgr2|cGK-II	protein kinase, cGMP-dependent, type II	protein-coding	0.000000	0.313433	
mm_9800.1	chr1	181853088	181853288	-	1	NA	NA	NA	-10787	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.025000	0.577114	
mm_124284.1	chr14	103048624	103048824	-	1	NA	NA	NA	1712	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.482587	
mm_163255.1	chr11	109650248	109650448	+	1	NA	NA	NA	-573	NM_021880	19084	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.060000	0.641791	
mm_55138.1	chr6	51320833	51321033	-	1	NA	NA	NA	-51023	NR_029719	387166		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.005000	0.492537	
mm_161427.1	chr15	44428160	44428360	-	1	NA	NA	NA	47	NM_001113554	67429	Mm.490404	NM_026149	ENSMUSG00000038736	Nudcd1	4921532K09Rik|AA407246|AW260430|AW556235|CML66-L|Cml66	NudC domain containing 1	protein-coding	0.120000	0.676617	
mm_77134.1	chr8	111366389	111366589	-	1	NA	NA	NA	27332	NM_178086	338521	Mm.41083	NM_178086	ENSMUSG00000033579	Fa2h	FAAH|Faxdc1|G630055L08Rik	fatty acid 2-hydroxylase	protein-coding	0.010000	0.557214	
mm_160313.1	chr7	141406415	141406615	+	1	NA	NA	NA	7610	NM_172116	213350	Mm.290953	NM_172116	ENSMUSG00000051007	Pddc1	BC023835|D230016J19Rik	Parkinson disease 7 domain containing 1	protein-coding	0.020000	0.467662	
mm_144004.1	chr17	88065888	88066088	-	1	NA	NA	NA	-703	NM_001081034	225055	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.105000	0.736318	
mm_55625.1	chr6	72235489	72235689	-	1	NA	NA	NA	-12	NM_153778	71093	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0.095000	0.671642	-21(TTCTTTAAAGGC,+,0.00),-21(TTCTTTAAAGGC,-,0.00),-20(TCTTTAAAGGCG,+,0.00)
mm_100001.1	chr11	114851430	114851630	+	1	NA	NA	NA	-2	NM_001110337	70355	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.080000	0.606965	
mm_93725.1	chr10	119239949	119240149	-	1	NA	NA	NA	6	NM_027994	71902	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	0.135000	0.756219	
mm_14976.1	chr2	152106159	152106359	+	1	NA	NA	NA	735	NM_029688	76650	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.005000	0.422886	
mm_51606.1	chr6	84088857	84089057	+	1	NA	NA	NA	69571	NM_021469	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.005000	0.338308	
mm_63656.1	chr7	129256942	129257142	+	1	NA	NA	NA	-52	NM_001080963	381925	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0.125000	0.786070	
mm_142751.1	chr17	48451420	48451620	-	1	NA	NA	NA	-19	NM_027292	70026	Mm.22613	NM_027292	ENSMUSG00000023995	Tspo2	2510027D20Rik|Bzrpl1	translocator protein 2	protein-coding	0.020000	0.562189	
mm_87345.1	chr10	43523987	43524187	+	1	NA	NA	NA	16907	NM_026411	67851	Mm.209953	NM_026411	ENSMUSG00000019797	1700021F05Rik	-	RIKEN cDNA 1700021F05 gene	protein-coding	0.030000	0.472637	-82(TCCTTTAAAAAA,-,0.00),-22(TCCTTTATAAGA,-,0.00)
mm_83254.1	chr9	42401553	42401753	-	1	NA	NA	NA	-1724	NM_001324548	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.020000	0.552239	
mm_166199.1	chr5	37469548	37469748	+	1	NA	NA	NA	131170	NM_145920	68525	Mm.25506	NM_145920	ENSMUSG00000050248	Evc2	1110017L09Rik|Lbn|limbin	Ellis van Creveld syndrome 2	protein-coding	0.000000	0.567164	
mm_134540.1	chr16	19706285	19706485	-	1	NA	NA	NA	-20	NM_177356	239739	Mm.258059	NM_177356	ENSMUSG00000041247	Lamp3	1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403	lysosomal-associated membrane protein 3	protein-coding	0.000000	0.442786	
mm_46436.1	chr5	104982585	104982785	-	1	NA	NA	NA	32	NM_030239	27405	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP-binding cassette, sub-family G (WHITE), member 3	protein-coding	0.030000	0.626866	
mm_81775.1	chr9	114688661	114688861	+	1	NA	NA	NA	-70	NM_146229	235661	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	0.125000	0.741294	
mm_65392.1	chr7	25092510	25092710	-	1	NA	NA	NA	4565	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.035000	0.562189	
mm_166029.1	chr4	126058533	126058733	+	1	NA	NA	NA	68	NM_172701	230751	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	0.060000	0.577114	
mm_138644.1	chr17	35866610	35866810	+	1	NA	NA	NA	95	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.085000	0.686567	
mm_32301.1	chr4	103120183	103120383	+	1	NA	NA	NA	893	NM_001039081	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.015000	0.437811	
mm_172433.1	chr7	29628233	29628433	+	1	NA	NA	NA	98682	NM_029714	76718	Mm.69030	NM_029714	ENSMUSG00000049123	Catsperg2	1700067C01Rik|CATSPERG	catsper channel auxiliary subunit gamma 2	protein-coding	0.020000	0.487562	62(TTCTTTATAAGG,-,0.00),64(CTTTATAAGGCG,+,0.00)
mm_143251.1	chr17	65509934	65510134	-	1	NA	NA	NA	30748	NM_001008973	381107	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	0.005000	0.457711	-59(CTCTCTATGAGG,-,0.00)
mm_84267.1	chr9	62665966	62666166	-	1	NA	NA	NA	-11789	NM_176922	319480	Mm.34883	NM_176922	ENSMUSG00000032243	Itga11	4732459H24Rik	integrin alpha 11	protein-coding	0.015000	0.522388	
mm_41627.1	chr5	96968729	96968929	+	1	NA	NA	NA	-28860	NM_080708	140780	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.020000	0.467662	-56(GGCCATAAAAAG,-,0.00),-54(CCATAAAAAGTG,+,0.00)
mm_103366.1	chr11	75169044	75169244	-	1	NA	NA	NA	-992	NM_001098203	15248	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.135000	0.741294	
mm_89691.1	chr10	97565665	97565865	+	1	NA	NA	NA	264	NM_008524	17022	Mm.18888	NM_008524	ENSMUSG00000036446	Lum	Ldc|SLRR2D	lumican	protein-coding	0.015000	0.542289	
mm_157729.1	chrX	70385726	70385926	-	1	NA	NA	NA	-87	NM_026787	68618	Mm.293255	NM_026787	ENSMUSG00000045237	1110012L19Rik	-	RIKEN cDNA 1110012L19 gene	protein-coding	0.065000	0.462687	
mm_50587.1	chr6	49059162	49059362	+	1	NA	NA	NA	-14533	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.015000	0.447761	
mm_139165.1	chr17	47557622	47557822	+	1	NA	NA	NA	-35745	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.487562	
mm_108154.1	chr12	76324779	76324979	+	1	NA	NA	NA	-12	NM_001101471	238276	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.115000	0.741294	
mm_13483.1	chr2	106226354	106226554	+	1	NA	NA	NA	-222905	NR_033993	99349	Mm.25661	NM_026992	ENSMUSG00000027166	Dnajc24	1700030A21Rik|2610027M02Rik|AV066965|AW240712|Dph4|MmDjC7|Zcsl3	DnaJ heat shock protein family (Hsp40) member C24	protein-coding	0.020000	0.552239	
mm_89961.1	chr10	111296341	111296541	+	1	NA	NA	NA	-2238	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.000000	0.288557	
mm_29692.1	chr3	123113473	123113673	-	1	NA	NA	NA	-78586	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.040000	0.512438	
mm_67952.1	chr7	100498742	100498942	-	1	NA	NA	NA	5484	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.045000	0.601990	
mm_113510.1	chr13	37778294	37778494	+	1	NA	NA	NA	-47644	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.085000	0.686567	
mm_87865.1	chr10	61297669	61297869	+	1	NA	NA	NA	-67	NM_011073	18646	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	0.020000	0.577114	16(CATTTTAAAAGC,-,0.00)
mm_31056.1	chr4	41190986	41191186	+	1	NA	NA	NA	55065	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.000000	0.407960	
mm_143682.1	chr17	80062082	80062282	-	1	NA	NA	NA	86	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.095000	0.711443	
mm_107097.1	chr12	17690743	17690943	+	1	NA	NA	NA	29	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.125000	0.731343	
mm_22290.1	chr2	180234891	180235091	-	1	NA	NA	NA	-9132	NM_001081171	16776	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0.020000	0.562189	-33(GTCCATAAATGG,-,0.00),-31(CCATAAATGGTC,+,0.00)
mm_16713.1	chr2	7125480	7125680	-	1	NA	NA	NA	-44278	NM_001160292	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.000000	0.383085	-50(TCTTTAAAGGTC,+,0.00)
mm_171631.1	chr4	19298790	19298990	+	1	NA	NA	NA	18040	NM_013927	30952	Mm.445778	NM_013927	ENSMUSG00000056494	Cngb3	CCNC2|CNG6|Cngbeta2	cyclic nucleotide gated channel beta 3	protein-coding	0.015000	0.452736	
mm_54644.1	chr6	38875812	38876012	-	1	NA	NA	NA	278	NM_010433	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.135000	0.756219	
mm_30054.1	chr3	136449383	136449583	-	1	NA	NA	NA	-134	NR_040592	70055	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	0.015000	0.452736	
mm_3418.1	chr1	145183724	145183924	+	1	NA	NA	NA	-408403	NM_022881	64214	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	0.020000	0.417910	
mm_7158.1	chr1	91459195	91459395	-	1	NA	NA	NA	33	NM_011066	18627	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.145000	0.711443	
mm_3745.1	chr1	155558316	155558516	+	1	NA	NA	NA	296	NM_026683	72482	Mm.288249	NM_026683	ENSMUSG00000033701	Acbd6	0610010G04Rik|2610100E10Rik	acyl-Coenzyme A binding domain containing 6	protein-coding	0.140000	0.756219	
mm_53654.1	chr6	141274863	141275063	+	1	NA	NA	NA	25694	NM_018779	54611	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0.000000	0.437811	
mm_4215.1	chr1	171287976	171288176	+	1	NA	NA	NA	-115	NM_013919	30941	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	0.045000	0.587065	
mm_62178.1	chr7	97451169	97451369	+	1	NA	NA	NA	-65	NM_001136235	233529	Mm.334033	NM_001010826	ENSMUSG00000051727	Kctd14	AI449310|D7Ertd760e	potassium channel tetramerisation domain containing 14	protein-coding	0.000000	0.502488	
mm_171985.1	chr5	93093369	93093569	+	1	NA	NA	NA	53	NM_001347377	52398	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.120000	0.731343	
mm_140594.1	chr17	10280512	10280712	-	1	NA	NA	NA	38749	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.000000	0.278607	-7(TTTTTTAAACAC,+,0.00)
mm_30099.1	chr3	138472164	138472364	-	1	NA	NA	NA	17118	NM_175224	75624	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	0.005000	0.373134	
mm_7385.1	chr1	110959713	110959913	-	1	NA	NA	NA	17559	NM_001081386	227485	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding	0.000000	0.308458	
mm_17635.1	chr2	31116205	31116405	-	1	NA	NA	NA	-19805	NM_001177650	14269	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.010000	0.502488	
mm_64859.1	chr7	13037588	13037788	-	1	NA	NA	NA	-61	NM_001243968	22192	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0.115000	0.726368	
mm_71371.1	chr8	45763845	45764045	+	1	NA	NA	NA	55352	NR_045739	319940	Mm.441720	NR_045739	ENSMUSG00000085440	Sorbs2os	D330022K07Rik	sorbin and SH3 domain containing 2, opposite strand	ncRNA	0.030000	0.626866	
mm_109355.1	chr12	109617837	109618037	+	1	NA	NA	NA	-321	NR_029918	723854		NR_029918	ENSMUSG00000065433	Mir370	Mirn370|mir-370|mmu-mir-370	microRNA 370	ncRNA	0.015000	0.407960	
mm_153489.1	chr19	41319561	41319761	-	1	NA	NA	NA	-55657	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.010000	0.472637	
mm_127537.1	chr15	102104282	102104482	+	1	NA	NA	NA	1394	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.010000	0.552239	
mm_55615.1	chr6	72123104	72123304	-	1	NA	NA	NA	-7	NR_045165	71265	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.005000	0.402985	
mm_46265.1	chr5	99963683	99963883	-	1	NA	NA	NA	15155	NM_001077266	11991	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.005000	0.378109	
mm_142174.1	chr17	36257746	36257946	-	1	NA	NA	NA	0	NM_026308	67676	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0.070000	0.686567	
mm_101918.1	chr11	50200529	50200729	-	1	NA	NA	NA	10191	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.010000	0.512438	-36(CCTTTTCAGGCA,+,0.00)
mm_140161.1	chr17	80224403	80224603	+	1	NA	NA	NA	14	NM_026053	67242	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem (nuclear organelle) associated protein 6	protein-coding	0.055000	0.587065	
mm_47085.1	chr5	117115991	117116191	-	1	NA	NA	NA	-98	NM_178622	71954	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	0.120000	0.686567	
mm_69298.1	chr7	128288989	128289189	-	1	NA	NA	NA	-654	NR_037290	100526559		NR_037290	ENSMUSG00000093215	Mir3103	mir-3103|mmu-mir-3103	microRNA 3103	ncRNA	0.015000	0.517413	
mm_116655.1	chr13	49187921	49188121	-	1	NA	NA	NA	474	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.060000	0.641791	
mm_145602.1	chr18	61045332	61045532	+	1	NA	NA	NA	282	NM_008809	18596	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.040000	0.601990	
mm_74300.1	chr8	126298460	126298660	+	1	NA	NA	NA	-19	NM_175434	210027	Mm.405238	NM_175434	ENSMUSG00000057060	Slc35f3	B230375D17Rik	solute carrier family 35, member F3	protein-coding	0.135000	0.746269	
mm_170939.1	chr2	4919820	4920020	+	1	NA	NA	NA	924	NM_010726	16922	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.040000	0.552239	
mm_170166.1	chr17	53866937	53867137	-	1	NA	NA	NA	-21079	NM_026935	69083	Mm.19320	NM_026935	ENSMUSG00000023122	Sult1c2	1810008N17Rik|ST1C1|ST1C2|Sult1c1	sulfotransferase family, cytosolic, 1C, member 2	protein-coding	0.025000	0.452736	-55(CCTTTTATGCTT,+,0.00)
mm_127926.1	chr15	10358594	10358794	-	1	NA	NA	NA	115	NM_001031851	268782	Mm.482244	NM_001031851	ENSMUSG00000089678	Agxt2	AI303810|AI663818	alanine-glyoxylate aminotransferase 2	protein-coding	0.010000	0.492537	
mm_48530.1	chr5	142903726	142903926	-	1	NA	NA	NA	2928	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.045000	0.517413	
mm_52439.1	chr6	113623913	113624113	+	1	NA	NA	NA	-8	NM_009507	22346	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0.150000	0.786070	
mm_110447.1	chr12	51134891	51135091	-	1	NA	NA	NA	129835	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA	0.035000	0.487562	-19(TGCTATTTAAGA,-,0.00)
mm_61931.1	chr7	90166003	90166203	+	1	NA	NA	NA	35871	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.373134	
mm_166040.1	chr4	130047473	130047673	+	1	NA	NA	NA	-267	NM_028266	107581	Mm.41860	NM_028266	ENSMUSG00000040690	Col16a1	2700007F12Rik|A530052M23Rik|AI838662|CA1F	collagen, type XVI, alpha 1	protein-coding	0.050000	0.691542	
mm_373.1	chr1	34005790	34005990	+	1	NA	NA	NA	-5935	NM_133833	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.015000	0.497512	
mm_87482.1	chr10	51493794	51493994	+	1	NA	NA	NA	2996	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.378109	
mm_172495.1	chr7	63023721	63023921	+	1	NA	NA	NA	188705	NM_007390	11441	Mm.113464	NM_007390	ENSMUSG00000030525	Chrna7	Acra7|alpha7|nAchR	cholinergic receptor, nicotinic, alpha polypeptide 7	protein-coding	0.035000	0.527363	
mm_18424.1	chr2	60751796	60751996	-	1	NA	NA	NA	-29293	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.045000	0.492537	
mm_148599.1	chr19	5286713	5286913	+	1	NA	NA	NA	8642	NM_030109	319322	Mm.196532	NM_030109	ENSMUSG00000024853	Sf3b2	145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150	splicing factor 3b, subunit 2	protein-coding	0.015000	0.562189	
mm_14958.1	chr2	152080827	152081027	+	1	NA	NA	NA	-602	NM_001160410	545474	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.065000	0.592040	
mm_14645.1	chr2	136892187	136892387	+	1	NA	NA	NA	24	NM_028834	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.065000	0.532338	
mm_25666.1	chr3	121823830	121824030	+	1	NA	NA	NA	-8715	NM_008991	19299	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.015000	0.407960	
mm_169564.1	chr15	15914610	15914810	+	1	NA	NA	NA	-863391	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.045000	0.641791	
mm_106450.1	chr11	119942569	119942769	-	1	NA	NA	NA	-423	NM_001037754	108100	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0.130000	0.756219	
mm_39620.1	chr5	24413313	24413513	+	1	NA	NA	NA	-38	NM_183000	171209	Mm.299636	NM_183000	ENSMUSG00000038276	Asic3	AW742291|Accn3|DRASIC|SLNAC1|TNAC1	acid-sensing (proton-gated) ion channel 3	protein-coding	0.030000	0.616915	
mm_95085.1	chr11	33512943	33513143	+	1	NA	NA	NA	703	NR_110973	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.070000	0.542289	38(CGCTCTAAAAGG,-,0.00)
mm_93161.1	chr10	93247184	93247384	-	1	NA	NA	NA	63875	NM_001322268	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.015000	0.467662	
mm_170203.1	chr17	69537055	69537255	-	1	NA	NA	NA	97829	NM_001145192	320722	Mm.400254	NM_001145192	ENSMUSG00000091636	Akain1	A330050F15Rik	A kinase (PRKA) anchor inhibitor 1	protein-coding	0.040000	0.477612	-57(CTCCTTAAGAGG,-,0.00)
mm_138971.1	chr17	45283105	45283305	+	1	NA	NA	NA	150502	NM_152810	71702	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0.015000	0.527363	-23(CTCCATAAGAGC,-,0.00)
mm_66089.1	chr7	30973091	30973291	-	1	NA	NA	NA	278	NM_001164185	54135	Mm.4067	NM_017405	ENSMUSG00000001247	Lsr	ILDR3|Lisch7	lipolysis stimulated lipoprotein receptor	protein-coding	0.120000	0.696517	
mm_10917.1	chr2	25400451	25400651	+	1	NA	NA	NA	-2499	NM_008721	18146	Mm.1131	NM_008721	ENSMUSG00000015094	Npdc1	AI314472|NPDC-1	neural proliferation, differentiation and control 1	protein-coding	0.040000	0.552239	
mm_139934.1	chr17	71086081	71086281	+	1	NA	NA	NA	66624	NM_001083934	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.020000	0.407960	
mm_4853.1	chr1	187607192	187607392	+	1	NA	NA	NA	-1714	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.060000	0.646766	
mm_63671.1	chr7	130252325	130252525	+	1	NA	NA	NA	14383	NM_010207	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	0.005000	0.542289	
mm_124637.1	chr15	4375387	4375587	+	1	NA	NA	NA	-4	NM_177355	239318	Mm.308996	NM_177355	ENSMUSG00000049148	Plcxd3	B130016O10Rik	phosphatidylinositol-specific phospholipase C, X domain containing 3	protein-coding	0.025000	0.547264	
mm_113891.1	chr13	49190856	49191056	+	1	NA	NA	NA	3409	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.020000	0.542289	22(GGGTTTTAGAGG,-,0.00)
mm_59501.1	chr7	27545217	27545417	+	1	NA	NA	NA	7901	NM_011116	18807	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.005000	0.482587	-24(GGGTTTAAAAAA,-,0.00)
mm_66490.1	chr7	45052960	45053160	-	1	NA	NA	NA	-179	NM_175022	233210	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	0.060000	0.686567	
mm_165049.1	chr19	40665864	40666064	-	1	NA	NA	NA	6194	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.015000	0.457711	
mm_44643.1	chr5	28209656	28209856	-	1	NA	NA	NA	412	NM_001310511	269637	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.100000	0.726368	
mm_5416.1	chr1	33907586	33907786	-	1	NA	NA	NA	-65	NM_177235	320705	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.155000	0.796020	
mm_30465.1	chr3	154094037	154094237	-	1	NA	NA	NA	120701	NM_001081263	242259	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0.005000	0.462687	
mm_25834.1	chr3	129199868	129200068	+	1	NA	NA	NA	90	NM_001042504	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.080000	0.651741	
mm_93148.1	chr10	92722283	92722483	-	1	NA	NA	NA	35	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	0.100000	0.706468	
mm_14601.1	chr2	136501811	136502011	+	1	NA	NA	NA	-30410	NM_175667	319196	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0.000000	0.343284	
mm_81491.1	chr9	110009462	110009662	+	1	NA	NA	NA	-42459	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.010000	0.542289	
mm_91064.1	chr10	19004868	19005068	-	1	NA	NA	NA	6995	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.020000	0.562189	
mm_75903.1	chr8	71272363	71272563	-	1	NA	NA	NA	127	NM_001163042	76478	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding	0.070000	0.626866	
mm_68555.1	chr7	114416512	114416712	-	1	NA	NA	NA	1358	NM_011055	18576	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0.075000	0.601990	
mm_55118.1	chr6	50394166	50394366	-	1	NA	NA	NA	-11429	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.020000	0.452736	
mm_143720.1	chr17	81375358	81375558	-	1	NA	NA	NA	-310373	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.000000	0.442786	
mm_110174.1	chr12	27336747	27336947	-	1	NA	NA	NA	5871	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.010000	0.383085	57(GAGTTTATAAGA,-,0.00)
mm_92085.1	chr10	62791906	62792106	-	1	NA	NA	NA	362	NM_026201	67500	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	0.145000	0.800995	
mm_1442.1	chr1	67220446	67220646	+	1	NA	NA	NA	97519	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.025000	0.437811	
mm_102808.1	chr11	68926981	68927181	-	1	NA	NA	NA	0	NM_145746	252868	Mm.76826	NM_145746	ENSMUSG00000032921	Odf4	Oppo1	outer dense fiber of sperm tails 4	protein-coding	0.015000	0.557214	
mm_54394.1	chr6	31318034	31318234	-	1	NA	NA	NA	80639	NR_040300	100503869	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845|OTTMUSG00000014733	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0.025000	0.517413	76(TCCTCTAAAAGC,-,0.00),77(CCTCTAAAAGCC,+,0.00)
mm_60729.1	chr7	45418244	45418444	+	1	NA	NA	NA	-2602	NM_008497	16866	Mm.57061	NM_008497	ENSMUSG00000100916	Lhb	Gm29035|LH|LH-B|LSH-B|LSH-beta	luteinizing hormone beta	protein-coding	0.025000	0.572139	
mm_70916.1	chr8	25720367	25720567	+	1	NA	NA	NA	419	NR_121643	71910	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	0.050000	0.611940	
mm_9541.1	chr1	173907354	173907554	-	1	NA	NA	NA	5592	NM_001301745	381308	Mm.490248	NM_001033450	ENSMUSG00000026536	Ifi211	A730048F03|Ifi205b|Mnda|ifi-205-B	interferon activated gene 211	protein-coding	0.020000	0.398010	48(TTTTTTAAAGAC,+,0.00)
mm_148117.1	chr18	74981446	74981646	-	1	NA	NA	NA	1	NR_110446	71545	Mm.488094	NR_110446		9030625G05Rik	-	RIKEN cDNA 9030625G05 gene	ncRNA	0.020000	0.482587	-94(TGCCTTAAAAAG,-,0.00),-92(CCTTAAAAAGGC,+,0.00)
mm_78247.1	chr9	21660515	21660715	+	1	NA	NA	NA	44446	NM_001174078	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.010000	0.487562	
mm_27220.1	chr3	36000555	36000755	-	1	NA	NA	NA	23	NM_023644	72039	Mm.249016	NM_023644	ENSMUSG00000027709	Mccc1	1810045E08Rik|2310058B18Rik|MCCalpha|Mcca|R75106	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	protein-coding	0.055000	0.562189	
mm_65019.1	chr7	17710878	17711078	-	1	NA	NA	NA	-2274	NM_028480	73250	Mm.244138	NM_028480	ENSMUSG00000008789	Ceacam5	1600029H12Rik|Psg30	carcinoembryonic antigen-related cell adhesion molecule 5	protein-coding	0.000000	0.432836	-35(CACTATAAGAGG,-,0.00)
mm_141225.1	chr17	27324929	27325129	-	1	NA	NA	NA	-3356	NR_106075	102466818		NR_106075	ENSMUSG00000099237	Mir7216	Gm27555|mmu-mir-7216	microRNA 7216	ncRNA	0.030000	0.562189	
mm_136617.1	chr17	5492502	5492702	+	1	NA	NA	NA	2	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.120000	0.721393	
mm_61788.1	chr7	83883558	83883758	+	1	NA	NA	NA	683	NM_030705	80889	Mm.272998	NM_030705	ENSMUSG00000070462	Mesdc1	AW061151	mesoderm development candidate 1	protein-coding	0.105000	0.691542	
mm_157000.1	chrX	7570746	7570946	-	1	NA	NA	NA	-2754	NR_029473	78185	Mm.160055	NR_029473	ENSMUSG00000039545	Ppp1r3fos	4930524L23Rik	protein phosphatase 1, regulatory subunit 3F, opposite strand	ncRNA	0.020000	0.482587	
mm_9519.1	chr1	173748842	173749042	-	1	NA	NA	NA	-7133	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.000000	0.412935	7(CTCTAGTAAAGG,-,0.00)
mm_108536.1	chr12	84235748	84235948	+	1	NA	NA	NA	-16967	NM_001163501	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.015000	0.462687	
mm_68587.1	chr7	116033779	116033979	-	1	NA	NA	NA	-2832	NM_001025560	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.095000	0.721393	
mm_62028.1	chr7	91672369	91672569	+	1	NA	NA	NA	-389925	NM_001243046	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.015000	0.477612	
mm_24235.1	chr3	88950720	88950920	+	1	NA	NA	NA	-538	NM_001164533	65111	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0.105000	0.656716	
mm_62522.1	chr7	102230723	102230923	+	1	NA	NA	NA	7795	NR_111937	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.005000	0.457711	
mm_39670.1	chr5	25248380	25248580	+	1	NA	NA	NA	25587	NM_144908	231050	Mm.21814	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.035000	0.507463	
mm_109428.1	chr12	110601393	110601593	+	1	NA	NA	NA	98	NM_030238	13424	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0.125000	0.726368	-54(GCCTTTAGGGCG,+,0.00)
mm_67160.1	chr7	73541648	73541848	-	1	NA	NA	NA	-2	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.030000	0.487562	
mm_159260.1	chr2	154892731	154892931	-	1	NA	NA	NA	75	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.090000	0.597015	
mm_20520.1	chr2	130771967	130772167	-	1	NA	NA	NA	32034	NR_024097	100043766	Mm.447040	NR_024097		Gm14057	OTTMUSG00000015563	Ppp1r14c pseudogene	pseudo	0.005000	0.348259	
mm_57568.1	chr6	127129078	127129278	-	1	NA	NA	NA	-19626	NM_177003	319801	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	0.015000	0.527363	
mm_95744.1	chr11	54848262	54848462	+	1	NA	NA	NA	12229	NM_029327	75530	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	0.040000	0.482587	-34(TTCTATAAAAGT,-,0.00)
mm_6995.1	chr1	86358932	86359132	-	1	NA	NA	NA	423	NM_010880	17975	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	0.120000	0.686567	
mm_3758.1	chr1	156051290	156051490	+	1	NA	NA	NA	10529	NM_022329	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.025000	0.527363	
mm_107115.1	chr12	18217094	18217294	+	1	NA	NA	NA	-297316	NM_001033157	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.015000	0.497512	
mm_22205.1	chr2	173578217	173578417	-	1	NA	NA	NA	24	NM_001199955	70065	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	0.145000	0.805970	
mm_144093.1	chr18	3337758	3337958	+	1	NA	NA	NA	-269	NM_001110852	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.055000	0.477612	
mm_83380.1	chr9	44567618	44567818	-	1	NA	NA	NA	-37174	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.015000	0.492537	
mm_101595.1	chr11	34696126	34696326	-	1	NA	NA	NA	87679	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.010000	0.492537	
mm_26258.1	chr3	142500451	142500651	+	1	NA	NA	NA	3617	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.005000	0.467662	
mm_160751.1	chr10	81532039	81532239	-	1	NA	NA	NA	-7914	NM_010304	14676	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.020000	0.537313	
mm_146965.1	chr18	33438651	33438851	-	1	NA	NA	NA	24883	NM_001267717	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.035000	0.517413	
mm_113459.1	chr13	35963473	35963673	+	1	NA	NA	NA	-4333	NM_029628	76487	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	0.010000	0.383085	
mm_72241.1	chr8	75016165	75016365	+	1	NA	NA	NA	43	NM_001316754	70823	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0.010000	0.472637	
mm_110584.1	chr12	56529297	56529497	-	1	NA	NA	NA	23	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.045000	0.631841	
mm_142701.1	chr17	47868328	47868528	-	1	NA	NA	NA	-33737	NM_001109973	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.015000	0.636816	
mm_54596.1	chr6	38254201	38254401	-	1	NA	NA	NA	-292	NM_194061	330286	Mm.277163	NM_194061	ENSMUSG00000063455	D630045J12Rik	Kiaa1549|mKIAA1549	RIKEN cDNA D630045J12 gene	protein-coding	0.155000	0.840796	
mm_118722.1	chr14	22214202	22214402	+	1	NA	NA	NA	194590	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.383085	
mm_67252.1	chr7	75508502	75508702	-	1	NA	NA	NA	53068	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.015000	0.412935	
mm_39750.1	chr5	29658901	29659101	+	1	NA	NA	NA	-76897	NM_001037940	23950	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0.000000	0.358209	
mm_20612.1	chr2	131854362	131854562	-	1	NA	NA	NA	5285	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	0.005000	0.452736	-70(AGCTAGAAAAGC,-,0.00)
mm_10207.1	chr2	5137759	5137959	+	1	NA	NA	NA	83	NM_028804	74186	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	0.150000	0.776119	
mm_149593.1	chr19	16148994	16149194	+	1	NA	NA	NA	-15004	NR_033228	595139	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0.000000	0.432836	
mm_77759.1	chr9	2999949	3000149	+	1	NA	NA	NA	38694	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.013514	0.362416	
mm_131539.1	chr16	17759593	17759793	+	1	NA	NA	NA	72	NM_145479	224023	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	0.105000	0.736318	
mm_125001.1	chr15	23489768	23489968	+	1	NA	NA	NA	453405	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding	0.025000	0.487562	
mm_108073.1	chr12	73942161	73942361	+	1	NA	NA	NA	-22269	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.015000	0.437811	
mm_63742.1	chr7	130936066	130936266	+	1	NA	NA	NA	-37	NM_019564	56213	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	0.135000	0.736318	
mm_105066.1	chr11	100721217	100721417	-	1	NA	NA	NA	7467	NM_029307	75482	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.010000	0.517413	
mm_41899.1	chr5	105519411	105519611	+	1	NA	NA	NA	40	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.140000	0.716418	
mm_168832.1	chr12	22906358	22906558	-	1	NA	NA	NA	103785	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA	0.125000	0.741294	
mm_117663.1	chr13	93499571	93499771	-	1	NA	NA	NA	137	NM_021310	57748	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	0.115000	0.691542	
mm_13477.1	chr2	105904557	105904757	+	1	NA	NA	NA	19	NM_028260	66541	Mm.272253	NM_028260	ENSMUSG00000042670	Immp1l	1500034J20Rik|2610528O17Rik|AU042386	IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.060000	0.572139	
mm_43864.1	chr5	143472840	143473040	+	1	NA	NA	NA	8447	NM_144915	231871	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.025000	0.512438	
mm_135180.1	chr16	35981263	35981463	-	1	NA	NA	NA	-2000	NM_008465	16646	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0.015000	0.507463	
mm_105413.1	chr11	103638757	103638957	-	1	NA	NA	NA	17	NM_027083	69444	Mm.275677	NM_027083	ENSMUSG00000020945	Lyzl6	1700023H08Rik|Lyc1|Lyzb	lysozyme-like 6	protein-coding	0.010000	0.522388	
mm_73505.1	chr8	107334804	107335004	+	1	NA	NA	NA	41434	NM_133957	54446	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0.020000	0.487562	
mm_121559.1	chr14	122484283	122484483	+	1	NA	NA	NA	8999	NM_009574	22772	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0.040000	0.587065	
mm_109846.1	chr12	4593645	4593845	-	1	NA	NA	NA	737	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.050000	0.507463	-95(CTATATATACCC,+,0.00)
mm_139056.1	chr17	46383659	46383859	+	1	NA	NA	NA	-7	NM_207671	57908	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	0.180000	0.810945	
mm_120339.1	chr14	63493595	63493795	+	1	NA	NA	NA	15397	NM_021480	58865	Mm.354229	NM_021480	ENSMUSG00000021953	Tdh	-	L-threonine dehydrogenase	protein-coding	0.060000	0.616915	
mm_213.1	chr1	16687953	16688153	+	1	NA	NA	NA	-403	NM_001159711	17087	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0.010000	0.487562	
mm_52632.1	chr6	117174278	117174478	+	1	NA	NA	NA	5843	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.005000	0.472637	
mm_21179.1	chr2	154892810	154893010	-	1	NA	NA	NA	-4	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.105000	0.611940	-85(TCTTTTCTAGCC,+,0.00)
mm_109277.1	chr12	109546972	109547172	+	1	NA	NA	NA	1674	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.000000	0.492537	
mm_50994.1	chr6	63257708	63257908	+	1	NA	NA	NA	951	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.030000	0.482587	
mm_28133.1	chr3	87174372	87174572	-	1	NA	NA	NA	275	NM_001170985	170643	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kin of IRRE like (Drosophila)	protein-coding	0.085000	0.686567	
mm_54155.1	chr6	22444333	22444533	-	1	NA	NA	NA	-88352	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.050000	0.517413	13(GCTTATAGACAG,+,0.00)
mm_3683.1	chr1	153740252	153740452	+	1	NA	NA	NA	-1	NM_011267	19734	Mm.181709	NM_011267	ENSMUSG00000026475	Rgs16	Rgs14|Rgsr	regulator of G-protein signaling 16	protein-coding	0.100000	0.661692	
mm_85458.1	chr9	105420352	105420552	-	1	NA	NA	NA	19664	NM_001164828	66595	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1 (Drosophila)	protein-coding	0.025000	0.552239	
mm_127264.1	chr15	99712713	99712913	+	1	NA	NA	NA	-4780	NM_010271	14555	Mm.252391	NM_010271	ENSMUSG00000023019	Gpd1	AI747587|Gdc-1|Gdc1|mKIAA4010	glycerol-3-phosphate dehydrogenase 1 (soluble)	protein-coding	0.010000	0.597015	
mm_70987.1	chr8	27261328	27261528	+	1	NA	NA	NA	1101	NM_007918	13685	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0.050000	0.611940	
mm_136872.1	chr17	12917174	12917374	+	1	NA	NA	NA	945	NM_013686	21454	Mm.229342	NM_013686	ENSMUSG00000068039	Tcp1	AI528772|CCT|Cct1|Ccta|TRic|Tcp-1|Tp63|c-cpn|p63	t-complex protein 1	protein-coding	0.015000	0.358209	
mm_137315.1	chr17	24885928	24886128	+	1	NA	NA	NA	322	NM_011956	26426	Mm.36718	NM_011956	ENSMUSG00000039183	Nubp2	D17Wsu11e	nucleotide binding protein 2	protein-coding	0.040000	0.512438	
mm_94767.1	chr11	21238821	21239021	+	1	NA	NA	NA	-111	NM_139061	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.170000	0.835821	
mm_78940.1	chr9	45138201	45138401	+	1	NA	NA	NA	-741	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.075000	0.611940	-1(CAGCCTAAAAGC,-,0.00)
mm_1580.1	chr1	74281127	74281327	+	1	NA	NA	NA	2627	NM_174985	227289	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.010000	0.537313	
mm_121879.1	chr14	21052334	21052534	-	1	NA	NA	NA	8	NM_018829	55946	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.055000	0.567164	
mm_45632.1	chr5	76331022	76331222	-	1	NA	NA	NA	34	NM_001310637	79455	Mm.143764	NM_023508	ENSMUSG00000029235	Pdcl2	1700010B22Rik|1700016K07Rik|Mgcphlp|Tphlp	phosducin-like 2	protein-coding	0.025000	0.587065	
mm_57098.1	chr6	122590425	122590625	-	1	NA	NA	NA	11919	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.005000	0.507463	
mm_54384.1	chr6	31217566	31217766	-	1	NA	NA	NA	808	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.045000	0.517413	
mm_14750.1	chr2	144556215	144556415	+	1	NA	NA	NA	86	NM_001252545	27054	Mm.248492	NM_019787	ENSMUSG00000027429	Sec23b	-	SEC23 homolog B, COPII coat complex component	protein-coding	0.080000	0.636816	
mm_140851.1	chr17	23680336	23680536	-	1	NA	NA	NA	1071	NM_018777	54419	Mm.86421	NM_018777	ENSMUSG00000023906	Cldn6	AL024037	claudin 6	protein-coding	0.025000	0.472637	
mm_52601.1	chr6	117173399	117173599	+	1	NA	NA	NA	4964	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.025000	0.502488	
mm_3859.1	chr1	160978541	160978741	+	1	NA	NA	NA	35	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.015000	0.398010	59(GACTTTAAGGGG,-,0.00)
mm_17989.1	chr2	37919897	37920097	-	1	NA	NA	NA	143748	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.005000	0.427861	
mm_69755.1	chr7	140997871	140998071	-	1	NA	NA	NA	12773	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.005000	0.467662	
mm_155832.1	chrX	100740806	100741006	+	1	NA	NA	NA	10720	NM_001305941	71584	Mm.283495	NM_023608	ENSMUSG00000019359	Gdpd2	9130017L10Rik|Gde3|Obdpf	glycerophosphodiester phosphodiesterase domain containing 2	protein-coding	0.015000	0.492537	
mm_53894.1	chr6	3381907	3382107	-	1	NA	NA	NA	17564	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.005000	0.388060	
mm_117481.1	chr13	77131221	77131421	-	1	NA	NA	NA	4147	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0.005000	0.398010	13(ATGTATAAAGGG,-,0.00)
mm_112564.1	chr13	13512055	13512255	+	1	NA	NA	NA	74553	NM_010917	18073	Mm.4691	NM_010917	ENSMUSG00000005397	Nid1	A630025O17|Nid|entactin|entactin-1|nidogen-1	nidogen 1	protein-coding	0.000000	0.273632	
mm_116515.1	chr13	45708922	45709122	-	1	NA	NA	NA	201578	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.005000	0.358209	
mm_75889.1	chr8	70873135	70873335	-	1	NA	NA	NA	255	NM_026964	234388	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	0.065000	0.606965	
mm_5974.1	chr1	57519332	57519532	-	1	NA	NA	NA	-112758	NM_001302963	68736	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0.015000	0.402985	
mm_46791.1	chr5	112767224	112767424	-	1	NA	NA	NA	-25968	NR_040675	67360	Mm.59218	NR_040675	ENSMUSG00000098230	1700095B10Rik	-	RIKEN cDNA 1700095B10 gene	ncRNA	0.000000	0.482587	
mm_157055.1	chrX	8090368	8090568	-	1	NA	NA	NA	23	NM_009515	22376	Mm.4735	NM_009515	ENSMUSG00000031165	Was	U42471|Wasp	Wiskott-Aldrich syndrome	protein-coding	0.015000	0.597015	
mm_29730.1	chr3	126668924	126669124	-	1	NA	NA	NA	72073	NM_023813	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.025000	0.527363	
mm_145307.1	chr18	53464084	53464284	+	1	NA	NA	NA	-362	NM_001033281	225518	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	0.095000	0.736318	
mm_123370.1	chr14	63177834	63178034	-	1	NA	NA	NA	1644	NM_010191	14137	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	0.125000	0.701493	
mm_114864.1	chr13	93771579	93771779	+	1	NA	NA	NA	0	NM_009712	11881	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	0.110000	0.736318	
mm_171670.1	chr4	48657942	48658142	+	1	NA	NA	NA	-5472	NM_026509	68016	Mm.133444	NM_026509	ENSMUSG00000028348	Murc	2310039E09Rik	muscle-related coiled-coil protein	protein-coding	0.015000	0.388060	
mm_61463.1	chr7	75609803	75610003	+	1	NA	NA	NA	154369	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.020000	0.467662	
mm_144988.1	chr18	38250986	38251186	+	1	NA	NA	NA	-521	NR_027904	73516	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0.025000	0.587065	
mm_105451.1	chr11	104469350	104469550	-	1	NA	NA	NA	-27159	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.085000	0.711443	
mm_102306.1	chr11	55608188	55608388	-	1	NA	NA	NA	-90	NM_020492	14654	Mm.89320	NM_020492	ENSMUSG00000000263	Glra1	nmf11|oscillator|ot|spasmodic|spd	glycine receptor, alpha 1 subunit	protein-coding	0.070000	0.641791	
mm_74401.1	chr8	3279447	3279647	-	1	NA	NA	NA	70	NM_010568	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.085000	0.676617	
mm_42199.1	chr5	112292206	112292406	+	1	NA	NA	NA	15615	NM_009419	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.030000	0.532338	
mm_68165.1	chr7	103812529	103812729	-	1	NA	NA	NA	1294	NM_016956	15130	Mm.288567	NM_016956		Hbb-b2	AI036344|Hbb2|Hbbt2|beta2	hemoglobin, beta adult minor chain	protein-coding	0.005000	0.467662	
mm_166002.1	chr4	115884252	115884452	+	1	NA	NA	NA	-48	NM_001039124	654462	Mm.388913	NM_001039124	ENSMUSG00000073774	Kncn	Kino|L5	kinocilin	protein-coding	0.015000	0.562189	-48(ACTTTAATAGGC,+,0.00)
mm_75513.1	chr8	54529841	54530041	-	1	NA	NA	NA	57	NM_029701	76687	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.145000	0.721393	
mm_94574.1	chr11	11690025	11690225	+	1	NA	NA	NA	-52	NM_001301865	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.010000	0.467662	
mm_83997.1	chr9	57449233	57449433	-	1	NA	NA	NA	-9219	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.015000	0.487562	-77(GGCTCTATAGAG,-,0.00)
mm_71090.1	chr8	34815293	34815493	+	1	NA	NA	NA	7783	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.025000	0.527363	-27(ACTTTTATATCC,+,0.00)
mm_97382.1	chr11	77718704	77718904	+	1	NA	NA	NA	6489	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.020000	0.477612	
mm_126590.1	chr15	82345965	82346165	+	1	NA	NA	NA	19	NM_026914	69029	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	0.100000	0.696517	
mm_56526.1	chr6	99521145	99521345	-	1	NA	NA	NA	-252	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.060000	0.661692	
mm_39199.1	chr4	156022181	156022381	-	1	NA	NA	NA	1543	NR_040563	100038526	Mm.191866	NR_040563		Gm10560	ENSMUSG00000073673	predicted gene 10560	ncRNA	0.030000	0.502488	
mm_120363.1	chr14	64440593	64440793	+	1	NA	NA	NA	333	NM_001253715	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.110000	0.651741	
mm_51650.1	chr6	86028737	86028937	+	1	NA	NA	NA	156	NM_001271860	11519	Mm.104155	NM_013458	ENSMUSG00000030000	Add2	2900072M03Rik|add97	adducin 2 (beta)	protein-coding	0.090000	0.666667	
mm_121361.1	chr14	117242010	117242210	+	1	NA	NA	NA	316813	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.010000	0.323383	
mm_31134.1	chr4	43249487	43249687	+	1	NA	NA	NA	-17572	NM_177195	320571	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	0.010000	0.457711	
mm_4920.1	chr1	190916637	190916837	+	1	NA	NA	NA	-4967	NM_178775	320119	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.005000	0.452736	
mm_145043.1	chr18	39773441	39773641	+	1	NA	NA	NA	44	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.060000	0.661692	
mm_115442.1	chr13	117708916	117709116	+	1	NA	NA	NA	10995	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA	0.000000	0.288557	
mm_77882.1	chr9	7280151	7280351	+	1	NA	NA	NA	7737	NM_008607	17386	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0.030000	0.517413	
mm_51969.1	chr6	91758374	91758574	+	1	NA	NA	NA	48919	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.005000	0.427861	
mm_108018.1	chr12	73598382	73598582	+	1	NA	NA	NA	13686	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.020000	0.522388	
mm_94361.1	chr11	5009400	5009600	+	1	NA	NA	NA	22676	NM_007454	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.005000	0.427861	
mm_70522.1	chr8	12949402	12949602	+	1	NA	NA	NA	84	NM_001159485	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.020000	0.587065	
mm_119085.1	chr14	30889799	30889999	+	1	NA	NA	NA	3423	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.015000	0.522388	
mm_75652.1	chr8	65129354	65129554	-	1	NA	NA	NA	83	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA	0.020000	0.442786	
mm_57603.1	chr6	127796256	127796456	-	1	NA	NA	NA	-8213	NR_106092	102466996		NR_106092	ENSMUSG00000104804	Mir7233	mmu-mir-7233	microRNA 7233	ncRNA	0.010000	0.517413	
mm_84671.1	chr9	72017113	72017313	-	1	NA	NA	NA	53772	NR_029879	723889		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.010000	0.343284	
mm_46792.1	chr5	112767241	112767441	-	1	NA	NA	NA	-25951	NR_040675	67360	Mm.59218	NR_040675	ENSMUSG00000098230	1700095B10Rik	-	RIKEN cDNA 1700095B10 gene	ncRNA	0.000000	0.512438	
mm_38777.1	chr4	148038738	148038938	-	1	NA	NA	NA	-25	NM_011929	26372	Mm.89987	NM_011929	ENSMUSG00000029016	Clcn6	AI850629|Clc6	chloride channel, voltage-sensitive 6	protein-coding	0.080000	0.706468	
mm_150179.1	chr19	32619914	32620114	+	1	NA	NA	NA	9	NM_011864	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.005000	0.497512	
mm_86427.1	chr10	3834820	3835020	+	1	NA	NA	NA	-37747	NM_001033253	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.015000	0.626866	
mm_27771.1	chr3	72942105	72942305	-	1	NA	NA	NA	24661	NM_001081137	69983	Mm.261054	NM_001081137	ENSMUSG00000027790	Sis	2010204N08Rik|SI|Si-s	sucrase isomaltase (alpha-glucosidase)	protein-coding	0.000000	0.393035	
mm_128585.1	chr15	58076118	58076318	-	1	NA	NA	NA	290	NM_001042438	22770	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	0.100000	0.701493	
mm_167159.1	chr7	134419849	134420049	-	1	NA	NA	NA	-43121	NM_001081331	71007	Mm.334285	NM_001081331	ENSMUSG00000030994	D7Ertd443e	4933400E14Rik|FATS|Gm497	DNA segment, Chr 7, ERATO Doi 443, expressed	protein-coding	0.015000	0.393035	
mm_48170.1	chr5	137153072	137153272	-	1	NA	NA	NA	-36965	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.020000	0.472637	
mm_58314.1	chr6	146401249	146401449	-	1	NA	NA	NA	100874	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.000000	0.368159	
mm_57932.1	chr6	134566856	134567056	-	1	NA	NA	NA	-43	NM_008514	16974	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	0.185000	0.825871	
mm_17802.1	chr2	33353498	33353698	-	1	NA	NA	NA	17896	NM_001290570	241308	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0.015000	0.497512	
mm_168851.1	chr12	24097125	24097325	-	1	NA	NA	NA	44	NM_001256489	66808	Mm.379124	NM_001256489	ENSMUSG00000073158	9030624G23Rik	-	RIKEN cDNA 9030624G23 gene	protein-coding	0.105000	0.726368	
mm_123605.1	chr14	68086702	68086902	-	1	NA	NA	NA	2918	NM_010910	18039	Mm.1956	NM_010910	ENSMUSG00000022055	Nefl	AI847934|CMT2E|NF-L|NF68|Nfl	neurofilament, light polypeptide	protein-coding	0.005000	0.472637	
mm_129771.1	chr15	82782082	82782282	-	1	NA	NA	NA	12063	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.000000	0.532338	-34(CCCTTTATAAGG,+,0.00),-34(CCCTTTATAAGG,-,0.00),-32(CTTTATAAGGTG,+,0.00)
mm_48740.1	chr5	147687940	147688140	-	1	NA	NA	NA	37948	NM_010228	14254	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.000000	0.313433	
mm_168027.1	chrY	90738257	90738457	+	1	NA	NA	NA	16693	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.467662	
mm_34362.1	chr4	144892693	144892893	+	1	NA	NA	NA	-34	NM_001172424	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.080000	0.606965	
mm_14113.1	chr2	125859094	125859294	+	1	NA	NA	NA	85	NM_175154	69976	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	0.065000	0.527363	
mm_143320.1	chr17	66319439	66319639	-	1	NA	NA	NA	130211	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.015000	0.368159	74(GCCTATATATAC,-,0.00)
mm_44747.1	chr5	31220459	31220659	-	1	NA	NA	NA	-14	NM_008014	14208	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	0.155000	0.776119	
mm_100523.1	chr11	120573829	120574029	+	1	NA	NA	NA	-993	NM_011032	18453	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.035000	0.532338	
mm_30767.1	chr4	15988951	15989151	+	1	NA	NA	NA	24826	NM_145950	209212	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.030000	0.492537	
mm_77035.1	chr8	109565610	109565810	-	1	NA	NA	NA	-109	NM_178380	64340	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|Prp16|mKIAA0224	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	0.075000	0.611940	
mm_75050.1	chr8	32884547	32884747	-	1	NA	NA	NA	65379	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding	0.100000	0.686567	
mm_94969.1	chr11	30885315	30885515	+	1	NA	NA	NA	57	NM_175490	237716	Mm.338361	NM_175490	ENSMUSG00000043999	Gpr75	-	G protein-coupled receptor 75	protein-coding	0.120000	0.741294	
mm_65253.1	chr7	19871268	19871468	-	1	NA	NA	NA	-10069	NM_001033419	330483	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0.030000	0.562189	
mm_58896.1	chr7	17150095	17150295	+	1	NA	NA	NA	-205	NM_054059	384557	Mm.486145	NM_054059	ENSMUSG00000053228	Ceacam3	EG384557|Psg24|cea12	carcinoembryonic antigen-related cell adhesion molecule 3	protein-coding	0.010000	0.562189	
mm_45005.1	chr5	38480156	38480356	-	1	NA	NA	NA	50	NM_001102414	117591	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.040000	0.557214	
mm_17319.1	chr2	26445788	26445988	-	1	NA	NA	NA	-672	NM_153125	227648	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	0.110000	0.646766	
mm_111540.1	chr12	100887855	100888055	-	1	NA	NA	NA	11569	NM_001177674	238377	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.040000	0.601990	
mm_112094.1	chr12	112721667	112721867	-	1	NA	NA	NA	-407	NM_001024602	217882	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0.045000	0.611940	
mm_72418.1	chr8	81872118	81872318	+	1	NA	NA	NA	529656	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.000000	0.338308	
mm_62776.1	chr7	112375136	112375336	+	1	NA	NA	NA	6928	NM_027587	100504195	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	0.030000	0.631841	
mm_36634.1	chr4	93335017	93335217	-	1	NA	NA	NA	394	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.170000	0.766169	
mm_125392.1	chr15	41347346	41347546	+	1	NA	NA	NA	-100036	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.015000	0.462687	
mm_22274.1	chr2	178627697	178627897	-	1	NA	NA	NA	197282	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.005000	0.497512	
mm_42721.1	chr5	120560959	120561159	+	1	NA	NA	NA	27554	NM_145853	252972	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.035000	0.606965	
mm_160288.1	chr7	126847281	126847481	+	1	NA	NA	NA	-172	NM_010069	13446	Mm.266301	NM_010069	ENSMUSG00000052301	Doc2a	-	double C2, alpha	protein-coding	0.030000	0.547264	
mm_127060.1	chr15	97247320	97247520	+	1	NA	NA	NA	-133	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.160000	0.835821	
mm_149686.1	chr19	20492948	20493148	+	1	NA	NA	NA	333	NR_015502	320092	Mm.482524	NR_015502		E030003E18Rik	1700127G21Rik	RIKEN cDNA E030003E18 gene	ncRNA	0.005000	0.487562	
mm_132851.1	chr16	47212248	47212448	+	1	NA	NA	NA	-715381	NM_021497	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.040000	0.462687	
mm_30364.1	chr3	152005403	152005603	-	1	NA	NA	NA	160397	NM_016867	54120	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.010000	0.432836	
mm_140790.1	chr17	19487277	19487477	-	1	NA	NA	NA	-17434	NM_001104562	627537	Mm.469858	NM_001104562	ENSMUSG00000091859	Vmn2r100	EG627537	vomeronasal 2, receptor 100	protein-coding	0.000000	0.537313	
mm_87585.1	chr10	56655832	56656032	+	1	NA	NA	NA	278632	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.025000	0.432836	
mm_109975.1	chr12	12939552	12939752	-	1	NA	NA	NA	2184	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.050000	0.631841	
mm_158358.1	chrX	134600847	134601047	-	1	NA	NA	NA	58	NM_013463	11605	Mm.1114	NM_013463	ENSMUSG00000031266	Gla	Ags	galactosidase, alpha	protein-coding	0.035000	0.492537	
mm_172482.1	chr7	50873398	50873598	+	1	NA	NA	NA	274308	NM_172901	243996	Mm.443270	NM_172901	ENSMUSG00000084234	4933405O20Rik	-	RIKEN cDNA 4933405O20 gene	protein-coding	0.050000	0.577114	
mm_21047.1	chr2	152580180	152580380	-	1	NA	NA	NA	32	NM_145157	246700	Mm.82820	NM_145157	ENSMUSG00000050645	Defb19	BD-19|Defb24|Tdl|mBD-19	defensin beta 19	protein-coding	0.015000	0.582090	
mm_161306.1	chr14	34040952	34041152	+	1	NA	NA	NA	-26	NM_001034880	432838	Mm.318383	NM_001034880	ENSMUSG00000072624	Gm5460	EG432838	predicted gene 5460	protein-coding	0.005000	0.462687	
mm_61996.1	chr7	91143579	91143779	+	1	NA	NA	NA	52893	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.353234	
mm_128863.1	chr15	72809889	72810089	-	1	NA	NA	NA	335	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.080000	0.597015	22(GTCTCTAAAGAC,-,0.00)
mm_102101.1	chr11	52389966	52390166	-	1	NA	NA	NA	-6362	NM_153117	213673	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.010000	0.492537	
mm_91042.1	chr10	18545806	18546006	-	1	NA	NA	NA	170	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	0.075000	0.666667	
mm_81133.1	chr9	106514487	106514687	+	1	NA	NA	NA	14	NM_029300	75470	Mm.63799	NM_029300	ENSMUSG00000066382	Iqcf5	1700007L12Rik	IQ motif containing F5	protein-coding	0.015000	0.502488	
mm_163959.1	chr14	54894073	54894273	+	1	NA	NA	NA	30	NM_019402	54196	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	0.135000	0.776119	
mm_101679.1	chr11	40570440	40570640	-	1	NA	NA	NA	122142	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.005000	0.457711	
mm_74663.1	chr8	13583941	13584141	-	1	NA	NA	NA	-21580	NM_001080781	66501	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.005000	0.457711	
mm_150412.1	chr19	36927909	36928109	+	1	NA	NA	NA	1930	NM_001080706	107182	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0.005000	0.353234	-83(GGGCTTTAAAGG,-,0.00),-82(GGCTTTAAAGGC,-,0.00),-81(GCTTTAAAGGCT,+,0.00)
mm_52145.1	chr6	97978544	97978744	+	1	NA	NA	NA	-13139	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.512438	
mm_103889.1	chr11	83574937	83575137	-	1	NA	NA	NA	3599	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.000000	0.407960	
mm_91140.1	chr10	19851115	19851315	-	1	NA	NA	NA	244	NM_029529	76157	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	0.110000	0.736318	
mm_114631.1	chr13	76340640	76340840	+	1	NA	NA	NA	-44221	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.005000	0.328358	
mm_18460.1	chr2	62343563	62343763	-	1	NA	NA	NA	68568	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.000000	0.407960	
mm_122844.1	chr14	54726677	54726877	-	1	NA	NA	NA	-14603	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.020000	0.537313	
mm_89931.1	chr10	111239318	111239518	+	1	NA	NA	NA	-59261	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.000000	0.477612	
mm_91973.1	chr10	61434951	61435151	-	1	NA	NA	NA	17079	NM_013611	18119	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0.030000	0.442786	
mm_71917.1	chr8	70139611	70139811	+	1	NA	NA	NA	212	NR_132133	72368	Mm.644	NM_001145552	ENSMUSG00000002345	Borcs8	2310045N01Rik|Mef2bnb	BLOC-1 related complex subunit 8	protein-coding	0.045000	0.547264	
mm_8118.1	chr1	135984214	135984414	-	1	NA	NA	NA	22028	NM_177642	226438	Mm.119675	NM_177642	ENSMUSG00000051985	Igfn1	9830123M21Rik	immunoglobulin-like and fibronectin type III domain containing 1	protein-coding	0.025000	0.636816	
mm_110723.1	chr12	69682060	69682260	-	1	NA	NA	NA	-308	NM_001135559	20663	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	son of sevenless homolog 2 (Drosophila)	protein-coding	0.185000	0.820896	
mm_34036.1	chr4	138147368	138147568	+	1	NA	NA	NA	-8950	NR_126429	73563	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	0.020000	0.487562	
mm_153911.1	chr19	47138190	47138390	-	1	NA	NA	NA	4	NM_133746	72691	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	0.050000	0.631841	
mm_22133.1	chr2	170463788	170463988	-	1	NA	NA	NA	-32540	NM_001013369	109054	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	0.030000	0.537313	
mm_47377.1	chr5	122988962	122989162	-	1	NA	NA	NA	37	NM_001003953	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.055000	0.462687	
mm_54804.1	chr6	41702991	41703191	-	1	NA	NA	NA	1234	NM_032540	23925	Mm.19958	NM_032540	ENSMUSG00000029866	Kel	CD238|Ece3	Kell blood group	protein-coding	0.005000	0.527363	
mm_107572.1	chr12	44328887	44329087	+	1	NA	NA	NA	102	NM_001146031	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.150000	0.726368	
mm_124185.1	chr14	94687209	94687409	-	1	NA	NA	NA	-796630	NM_001346722	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.248756	
mm_149291.1	chr19	10674988	10675188	+	1	NA	NA	NA	2983	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.020000	0.567164	
mm_27481.1	chr3	53657265	53657465	-	1	NA	NA	NA	-10	NM_172862	242022	Mm.38378	NM_172862	ENSMUSG00000037016	Frem2	6030440P17Rik|8430406N05Rik|Gm409|b2b1562Clo|my|ne|nv1	Fras1 related extracellular matrix protein 2	protein-coding	0.055000	0.587065	
mm_122117.1	chr14	31001504	31001704	-	1	NA	NA	NA	62	NM_026911	69019	Mm.28852	NM_026911	ENSMUSG00000021917	Spcs1	1810004F21Rik	signal peptidase complex subunit 1 homolog (S. cerevisiae)	protein-coding	0.110000	0.696517	
mm_57906.1	chr6	132439616	132439816	-	1	NA	NA	NA	-75581	NM_053251	114600	Mm.428480	NM_053251		Gm4736	EG114600|Mp4|Mp6	predicted gene 4736	protein-coding	0.005000	0.442786	
mm_89119.1	chr10	84762129	84762329	+	1	NA	NA	NA	6181	NM_001024918	71137	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.030000	0.547264	
mm_97962.1	chr11	83740656	83740856	+	1	NA	NA	NA	-6184	NM_183249	66107	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.010000	0.452736	
mm_26783.1	chr3	9443813	9444013	-	1	NA	NA	NA	40835	NR_015499	320088	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.000000	0.502488	
mm_27113.1	chr3	30950831	30951031	-	1	NA	NA	NA	18484	NM_001165954	241915	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic-like 3 (Drosophila)	protein-coding	0.030000	0.537313	
mm_144647.1	chr18	33794820	33795020	+	1	NA	NA	NA	28	NR_038151	69749	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.110000	0.696517	-62(CCGTAGAAAAGC,-,0.00)
mm_38116.1	chr4	134538526	134538726	-	1	NA	NA	NA	-3239	NM_029759	76824	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	0.020000	0.557214	
mm_37087.1	chr4	116406753	116406953	-	1	NA	NA	NA	57328	NM_001042743	17776	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0.000000	0.422886	
mm_143486.1	chr17	71310739	71310939	-	1	NA	NA	NA	126	NM_145158	246707	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.115000	0.771144	
mm_128711.1	chr15	63963572	63963772	-	1	NA	NA	NA	49211	NR_029414	74460	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0.005000	0.383085	
mm_97930.1	chr11	83648096	83648296	+	1	NA	NA	NA	1182	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.020000	0.542289	
mm_42376.1	chr5	114929123	114929323	+	1	NA	NA	NA	5983	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.000000	0.482587	
mm_85656.1	chr9	107664242	107664442	-	1	NA	NA	NA	3057	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.015000	0.512438	
mm_58401.1	chr7	3218220	3218420	+	1	NA	NA	NA	-306	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.020000	0.477612	
mm_96199.1	chr11	62006432	62006632	+	1	NA	NA	NA	49769	NM_001310526	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.020000	0.512438	
mm_11116.1	chr2	28193231	28193431	+	1	NA	NA	NA	238	NM_001038614	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.125000	0.771144	
mm_9976.1	chr1	191224840	191225040	-	1	NA	NA	NA	-41607	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.045000	0.621891	
mm_53984.1	chr6	6869267	6869467	-	1	NA	NA	NA	166	NR_015388	320038	Mm.94021	NR_015388		Dlx6os1	A230055N17Rik|Dlx6as1|Evf-1|Evf-2|Evf1|Evf1/2|Evf2|Shhrs|mEvf-1	distal-less homeobox 6, opposite strand 1	ncRNA	0.020000	0.378109	
mm_153675.1	chr19	44396418	44396618	-	1	NA	NA	NA	11191	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.522388	
mm_136775.1	chr17	10304375	10304575	+	1	NA	NA	NA	14886	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.000000	0.368159	-4(CTTTAAATAGCT,+,0.00)
mm_61347.1	chr7	68287026	68287226	+	1	NA	NA	NA	-10532	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.010000	0.462687	
mm_100657.1	chr11	3193319	3193519	-	1	NA	NA	NA	44	NM_030207	78887	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.085000	0.666667	
mm_125819.1	chr15	74955814	74956014	+	1	NA	NA	NA	808	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.040000	0.626866	
mm_97245.1	chr11	75734473	75734673	+	1	NA	NA	NA	1686	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.000000	0.323383	
mm_1263.1	chr1	63177032	63177232	+	1	NA	NA	NA	301	NM_018796	55949	Mm.2718	NM_018796	ENSMUSG00000025967	Eef1b2	2810017J07Rik|Eef1b	eukaryotic translation elongation factor 1 beta 2	protein-coding	0.095000	0.606965	-36(CTCTATATAAGG,-,0.00)
mm_132670.1	chr16	42875750	42875950	+	1	NA	NA	NA	-88	NR_040522	75722	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	ENSMUSG00000075070|Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	0.065000	0.547264	
mm_81403.1	chr9	109050781	109050981	+	1	NA	NA	NA	-3985	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.005000	0.472637	
mm_68896.1	chr7	126449144	126449344	-	1	NA	NA	NA	13829	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.005000	0.437811	
mm_170294.1	chr18	3005708	3005908	+	1	NA	NA	NA	117604	NM_001167539	100312476	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.005000	0.358209	7(AGCCTTAAAAAG,-,0.00),9(CCTTAAAAAGCA,+,0.00)
mm_12184.1	chr2	65238648	65238848	+	1	NA	NA	NA	-122	NM_027225	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.130000	0.746269	
mm_73488.1	chr8	107048148	107048348	+	1	NA	NA	NA	366	NM_026513	68023	Mm.482335	NM_026513	ENSMUSG00000078931	Pdf	2610019N19Rik	peptide deformylase (mitochondrial)	protein-coding	0.090000	0.646766	
mm_144537.1	chr18	25753165	25753365	+	1	NA	NA	NA	718	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.090000	0.671642	
mm_130831.1	chr15	101846760	101846960	-	1	NA	NA	NA	3926	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.010000	0.497512	
mm_32898.1	chr4	118987371	118987571	+	1	NA	NA	NA	25504	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.000000	0.502488	
mm_121348.1	chr14	116925170	116925370	+	1	NA	NA	NA	-27	NM_001079844	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.030000	0.542289	
mm_121726.1	chr14	16575449	16575649	-	1	NA	NA	NA	-73	NM_001289762	218772	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	0.040000	0.517413	-61(GAGTTTTTAAGC,-,0.00),-59(GTTTTTAAGCGC,+,0.00)
mm_167552.1	chr9	34948733	34948933	-	1	NA	NA	NA	-167895	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.015000	0.467662	
mm_145092.1	chr18	43207432	43207632	+	1	NA	NA	NA	-165	NM_178749	269019	Mm.150401	NM_178749	ENSMUSG00000039954	Stk32a	A930015B13Rik|YANK1	serine/threonine kinase 32A	protein-coding	0.080000	0.706468	
mm_110293.1	chr12	32208409	32208609	-	1	NA	NA	NA	-39	NM_020272	30955	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphoinositide-3-kinase, catalytic, gamma polypeptide	protein-coding	0.025000	0.452736	
mm_101469.1	chr11	30649294	30649494	-	1	NA	NA	NA	2	NM_029344	75572	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	0.075000	0.606965	
mm_50181.1	chr6	41605062	41605262	+	1	NA	NA	NA	-320	NM_001146351	13848	Mm.271976	NM_007680	ENSMUSG00000029869	Ephb6	Cekl|Mep	Eph receptor B6	protein-coding	0.075000	0.621891	
mm_28134.1	chr3	87174448	87174648	-	1	NA	NA	NA	199	NM_001170985	170643	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kin of IRRE like (Drosophila)	protein-coding	0.100000	0.706468	
mm_138950.1	chr17	44134681	44134881	+	1	NA	NA	NA	-28973	NM_199016	224794	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90|mKIAA0879	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	0.035000	0.512438	
mm_88922.1	chr10	81194504	81194704	+	1	NA	NA	NA	-87	NR_015477	69678	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0.080000	0.636816	54(GTGTCTATAAAG,-,0.00),56(GTCTATAAAGCC,+,0.00)
mm_140644.1	chr17	12675739	12675939	-	1	NA	NA	NA	-1	NM_009202	20517	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.020000	0.522388	
mm_133257.1	chr16	77329418	77329618	+	1	NA	NA	NA	190	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.035000	0.532338	
mm_128966.1	chr15	74832041	74832241	-	1	NA	NA	NA	9502	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.010000	0.457711	
mm_6659.1	chr1	80213747	80213947	-	1	NA	NA	NA	97	NM_173425	241128	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding	0.025000	0.507463	79(TTTTATAGAGGC,+,0.00)
mm_163299.1	chr11	120350179	120350379	+	1	NA	NA	NA	1601	NR_038126	66838	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0.120000	0.726368	
mm_53369.1	chr6	129408804	129409004	+	1	NA	NA	NA	42	NM_172732	232414	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0.010000	0.442786	
mm_72405.1	chr8	81770631	81770831	+	1	NA	NA	NA	428169	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.005000	0.442786	-50(CTTTTAATAGAA,+,0.00),-33(TCCTAGAAAAGC,-,0.00)
mm_57326.1	chr6	124738566	124738766	-	1	NA	NA	NA	43	NM_001077705	15170	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.035000	0.567164	
mm_128627.1	chr15	59051147	59051347	-	1	NA	NA	NA	30779	NM_001146180	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.005000	0.393035	-68(TGCTATAAATAG,-,0.00)
mm_80696.1	chr9	92192994	92193194	+	1	NA	NA	NA	158	NM_001195693	100504689	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	0.040000	0.487562	
mm_114652.1	chr13	77708612	77708812	+	1	NA	NA	NA	22	NM_001163419	68675	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding	0.095000	0.601990	
mm_163118.1	chr11	75560998	75561198	-	1	NA	NA	NA	9669	NR_039553	100628624		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0.020000	0.621891	
mm_96781.1	chr11	69940627	69940827	+	1	NA	NA	NA	4399	NM_001347634	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.045000	0.636816	
mm_28499.1	chr3	92484566	92484766	-	1	NA	NA	NA	1215	NM_009264	20753	Mm.331191	NM_009264	ENSMUSG00000050359	Sprr1a	AI528815|SPR1a|mSPRR1A	small proline-rich protein 1A	protein-coding	0.000000	0.527363	
mm_14432.1	chr2	130589317	130589517	+	1	NA	NA	NA	-6829	NM_009732	11998	Mm.6190	NM_009732	ENSMUSG00000037727	Avp	Vp|Vsp	arginine vasopressin	protein-coding	0.010000	0.547264	
mm_54241.1	chr6	28247040	28247240	-	1	NA	NA	NA	14461	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.005000	0.278607	
mm_159817.1	chr5	120914748	120914948	+	1	NA	NA	NA	30	NM_133893	100535	Mm.247620	NM_133893	ENSMUSG00000032623	Oas1d	AA536864|C85127|oasl8	2'-5' oligoadenylate synthetase 1D	protein-coding	0.010000	0.557214	
mm_135003.1	chr16	32179526	32179726	-	1	NA	NA	NA	-174	NM_001033539	328660	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.010000	0.507463	
mm_102672.1	chr11	65221709	65221909	-	1	NA	NA	NA	48180	NM_145136	214384	Mm.32257	NM_145136	ENSMUSG00000020542	Myocd	BSAC2A|Srfcp	myocardin	protein-coding	0.010000	0.517413	
mm_17242.1	chr2	25617547	25617747	-	1	NA	NA	NA	31	NM_029859	77058	Mm.478493	NM_029859	ENSMUSG00000026940	Ccdc183	4921530D09Rik|Cccd183|Kiaa1984	coiled-coil domain containing 183	protein-coding	0.010000	0.517413	
mm_117790.1	chr13	97137797	97137997	-	1	NA	NA	NA	29	NM_021552	59050	Mm.390634	NM_021552	ENSMUSG00000060739	Nsa2	5730427N09Rik|LNR42|Nsa2p|Tinp1|Yr29	NSA2 ribosome biogenesis homolog	protein-coding	0.065000	0.542289	13(CCTTCTTAAAGG,-,0.00)
mm_98388.1	chr11	94211339	94211539	+	1	NA	NA	NA	-15	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.150000	0.751244	-35(GGCTATAAAACG,-,0.00)
mm_125439.1	chr15	44619200	44619400	+	1	NA	NA	NA	-341	NM_019480	55960	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0.175000	0.786070	
mm_48707.1	chr5	147077304	147077504	-	1	NA	NA	NA	58	NM_009087	20018	Mm.317557	NM_009087	ENSMUSG00000029642	Polr1d	1110003G10Rik|AC19|RPA16|Rpo1-3	polymerase (RNA) I polypeptide D	protein-coding	0.070000	0.651741	72(CTATTTAAAAAG,-,0.00)
mm_81363.1	chr9	108692201	108692401	+	1	NA	NA	NA	158	NM_008924	19087	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0.175000	0.766169	
mm_95750.1	chr11	54902022	54902222	+	1	NA	NA	NA	-732	NM_001329860	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.000000	0.398010	
mm_116339.1	chr13	38183940	38184140	-	1	NA	NA	NA	-20899	NM_026382	67797	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	0.035000	0.492537	
mm_68275.1	chr7	105596320	105596520	-	1	NA	NA	NA	3696	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.010000	0.373134	
mm_45700.1	chr5	83354800	83355000	-	1	NA	NA	NA	295	NM_153801	243078	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding	0.025000	0.432836	
mm_39427.1	chr5	16553370	16553570	+	1	NA	NA	NA	-25	NM_001289460	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.025000	0.522388	
mm_140037.1	chr17	74339091	74339291	+	1	NA	NA	NA	204	NM_016962	50850	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	0.135000	0.776119	
mm_53710.1	chr6	143203868	143204068	+	1	NA	NA	NA	36738	NM_029250	75320	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0.000000	0.402985	
mm_94160.1	chr10	128745356	128745556	-	1	NA	NA	NA	-1400	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.030000	0.497512	
mm_48723.1	chr5	147338963	147339163	-	1	NA	NA	NA	-16623	NM_001039678	231903	Mm.291286	NM_001039678	ENSMUSG00000075543	Urad	EG231903|Prhoxnb	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase	protein-coding	0.035000	0.542289	
mm_63618.1	chr7	128246843	128247043	+	1	NA	NA	NA	131	NM_001289552	21804	Mm.3248	NM_009365	ENSMUSG00000030782	Tgfb1i1	ARA55|Hic5|TSC-5|hic-5	transforming growth factor beta 1 induced transcript 1	protein-coding	0.060000	0.691542	
mm_564.1	chr1	38035599	38035799	+	1	NA	NA	NA	37689	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.010000	0.567164	
mm_155310.1	chrX	61288121	61288321	+	1	NA	NA	NA	96928	NR_033502	320247	Mm.447372	NR_033502		C030023E24Rik	-	RIKEN cDNA C030023E24 gene	ncRNA	0.015000	0.517413	
mm_152234.1	chr19	8709299	8709499	-	1	NA	NA	NA	4498	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.015000	0.447761	
mm_141675.1	chr17	33910034	33910234	-	1	NA	NA	NA	533	NM_001199733	13163	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0.035000	0.537313	
mm_94241.1	chr11	3293137	3293337	+	1	NA	NA	NA	2780	NM_019574	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.005000	0.512438	13(GTTTTTAAAGTC,+,0.00)
mm_69588.1	chr7	135705575	135705775	-	1	NA	NA	NA	10704	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.015000	0.452736	
mm_100219.1	chr11	117077089	117077289	+	1	NA	NA	NA	-159	NR_105853	102465258		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.050000	0.587065	
mm_86157.1	chr9	118149959	118150159	-	1	NA	NA	NA	137	NM_026442	67899	Mm.9953	NM_026442	ENSMUSG00000039163	Cmc1	2010110K16Rik|2010312P05Rik|AI596001	COX assembly mitochondrial protein 1	protein-coding	0.135000	0.771144	
mm_43517.1	chr5	137150060	137150260	+	1	NA	NA	NA	-33953	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.517413	
mm_87053.1	chr10	28827019	28827219	+	1	NA	NA	NA	96388	NR_033601	114676	Mm.390292	NR_033601		4930519F09Rik	-	pyruvate dehydrogenase E1 alpha 1 pseudogene	pseudo	0.000000	0.268657	
mm_75678.1	chr8	67974482	67974682	-	1	NA	NA	NA	-8	NM_177698	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.015000	0.472637	
mm_73105.1	chr8	94666532	94666732	+	1	NA	NA	NA	32	NM_024191	107566	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0.115000	0.706468	
mm_120232.1	chr14	62881933	62882133	+	1	NA	NA	NA	16491	NR_105860	102465311		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.010000	0.492537	
mm_1730.1	chr1	75382034	75382234	+	1	NA	NA	NA	20	NM_001085371	11790	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0.110000	0.796020	
mm_261.1	chr1	20890454	20890654	+	1	NA	NA	NA	-68	NM_028829	74229	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	0.090000	0.736318	
mm_166694.1	chr6	113670081	113670281	+	1	NA	NA	NA	-26869	NM_001347356	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.050000	0.621891	
mm_142349.1	chr17	43624313	43624513	-	1	NA	NA	NA	5886	NM_001161366	210510	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	0.010000	0.572139	
mm_117097.1	chr13	59822864	59823064	-	1	NA	NA	NA	183	NM_153538	214290	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.140000	0.751244	
mm_96643.1	chr11	69331269	69331469	+	1	NA	NA	NA	5111	NM_010599	16499	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0.025000	0.587065	
mm_9897.1	chr1	186705890	186706090	-	1	NA	NA	NA	-1	NM_001329107	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.045000	0.537313	
mm_136596.1	chr17	5072891	5073091	+	1	NA	NA	NA	77917	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.000000	0.393035	
mm_11454.1	chr2	32151068	32151268	+	1	NA	NA	NA	20	NM_001159634	227723	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0.185000	0.840796	
mm_155229.1	chrX	57196299	57196499	+	1	NA	NA	NA	-4238	NR_038463	100502842	Mm.164733	NR_038463	ENSMUSG00000085808	Gm14718	OTTMUSG00000017790	predicted gene 14718	ncRNA	0.035000	0.432836	
mm_63765.1	chr7	131174302	131174502	+	1	NA	NA	NA	0	NM_175166	71395	Mm.118845	NM_175166	ENSMUSG00000006204	5430419D17Rik	-	RIKEN cDNA 5430419D17 gene	protein-coding	0.025000	0.542289	
mm_46929.1	chr5	114690922	114691122	-	1	NA	NA	NA	-87	NM_019821	56356	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0.165000	0.796020	
mm_137911.1	chr17	32113651	32113851	+	1	NA	NA	NA	-22328	NR_027316	435518	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	ENSMUSG00000002791|Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0.085000	0.651741	
mm_38550.1	chr4	141605892	141606092	-	1	NA	NA	NA	60	NM_133754	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.035000	0.567164	
mm_20242.1	chr2	126491446	126491646	-	1	NA	NA	NA	7	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	0.010000	0.477612	
mm_167432.1	chr8	119213804	119214004	+	1	NA	NA	NA	-130634	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.000000	0.542289	
mm_20007.1	chr2	119173072	119173272	-	1	NA	NA	NA	-1337	NM_001039223	623781	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	OTTMUSG00000015762	predicted gene 14137	protein-coding	0.025000	0.562189	-62(GTCTTTATGAGG,-,0.00)
mm_85639.1	chr9	107655026	107655226	-	1	NA	NA	NA	12273	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.030000	0.547264	
mm_136674.1	chr17	6128271	6128471	+	1	NA	NA	NA	-9777	NM_054040	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.005000	0.437811	
mm_127498.1	chr15	101415029	101415229	+	1	NA	NA	NA	2726	NM_033073	110310	Mm.486285	NM_033073	ENSMUSG00000023039	Krt7	D15Wsu77e|K7|Krt2-7	keratin 7	protein-coding	0.010000	0.587065	
mm_36971.1	chr4	109476365	109476565	-	1	NA	NA	NA	40	NM_013876	29864	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0.125000	0.805970	
mm_33882.1	chr4	136172755	136172955	+	1	NA	NA	NA	581	NM_177733	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.100000	0.691542	
mm_86106.1	chr9	115310336	115310536	-	1	NA	NA	NA	-15	NM_024222	68292	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0.115000	0.726368	
mm_138584.1	chr17	35473386	35473586	+	1	NA	NA	NA	3397	NM_010391	15007	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	0.000000	0.507463	
mm_88041.1	chr10	67537969	67538169	+	1	NA	NA	NA	139	NM_001347458	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.010000	0.402985	
mm_100138.1	chr11	115974976	115975176	+	1	NA	NA	NA	351	NM_133663	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.125000	0.716418	
mm_102289.1	chr11	55405205	55405405	-	1	NA	NA	NA	14775	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.010000	0.577114	
mm_126821.1	chr15	88819534	88819734	+	1	NA	NA	NA	-12	NM_029720	76737	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0.115000	0.716418	
mm_96839.1	chr11	70018741	70018941	+	1	NA	NA	NA	236	NM_007864	13385	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs, large homolog 4 (Drosophila)	protein-coding	0.035000	0.636816	
mm_104909.1	chr11	99663090	99663290	-	1	NA	NA	NA	2770	NM_026834	68768	Mm.416844	NM_026834	ENSMUSG00000075566	Krtap4-6	1110054P19Rik	keratin associated protein 4-6	protein-coding	0.025000	0.467662	
mm_163887.1	chr14	25857276	25857476	-	1	NA	NA	NA	15221	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.000000	0.517413	
mm_99681.1	chr11	106008052	106008252	+	1	NA	NA	NA	-51	NM_001037712	192775	Mm.343850	NM_001037712	ENSMUSG00000001901	Kcnh6	m-erg2	potassium voltage-gated channel, subfamily H (eag-related), member 6	protein-coding	0.075000	0.686567	
mm_35027.1	chr4	4019394	4019594	-	1	NA	NA	NA	169	NM_181989	242285	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	0.030000	0.587065	
mm_40411.1	chr5	53063751	53063951	+	1	NA	NA	NA	14498	NM_011402	20531	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	0.005000	0.507463	
mm_8015.1	chr1	134866524	134866724	-	1	NA	NA	NA	-62903	NR_015606	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.005000	0.383085	
mm_119745.1	chr14	54123041	54123241	+	1	NA	NA	NA	130788	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.462687	
mm_49298.1	chr6	17731137	17731337	+	1	NA	NA	NA	-12355	NM_001289629	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.000000	0.348259	
mm_105794.1	chr11	109995655	109995855	-	1	NA	NA	NA	61	NM_013851	27404	Mm.341004	NM_013851	ENSMUSG00000020620	Abca8b	Abca8	ATP-binding cassette, sub-family A (ABC1), member 8b	protein-coding	0.050000	0.522388	
mm_121915.1	chr14	22542746	22542946	-	1	NA	NA	NA	-48	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.015000	0.477612	
mm_144622.1	chr18	32938669	32938869	+	1	NA	NA	NA	-272	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.020000	0.572139	-4(ATCCATATAAGC,-,0.00)
mm_119345.1	chr14	41104917	41105117	+	1	NA	NA	NA	-16	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.015000	0.587065	
mm_72196.1	chr8	72548309	72548509	+	1	NA	NA	NA	-99	NM_027485	70625	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	0.100000	0.671642	
mm_114145.1	chr13	55322654	55322854	+	1	NA	NA	NA	699	NM_025596	66494	Mm.439805	NM_025596	ENSMUSG00000021486	Prelid1	2610524G07Rik|Preli	PRELI domain containing 1	protein-coding	0.025000	0.517413	
mm_149603.1	chr19	16349456	16349656	+	1	NA	NA	NA	-34552	NR_105832	102465218		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.010000	0.388060	
mm_94511.1	chr11	8545241	8545441	+	1	NA	NA	NA	119194	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.015000	0.532338	
mm_87267.1	chr10	41529453	41529653	+	1	NA	NA	NA	10053	NM_016898	53599	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.015000	0.363184	
mm_52743.1	chr6	120465817	120466017	+	1	NA	NA	NA	2720	NM_008359	16172	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.005000	0.353234	
mm_117948.1	chr13	99435303	99435503	-	1	NA	NA	NA	-22577	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.040000	0.557214	
mm_144070.1	chr17	90995473	90995673	-	1	NA	NA	NA	94032	NM_001346957	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.005000	0.462687	
mm_81824.1	chr9	118049897	118050097	+	1	NA	NA	NA	9475	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.010000	0.422886	
mm_97764.1	chr11	82022912	82023112	+	1	NA	NA	NA	-12565	NM_011333	20296	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.020000	0.537313	
mm_67884.1	chr7	99348991	99349191	-	1	NA	NA	NA	4148	NM_009825	12406	Mm.22708	NM_009825	ENSMUSG00000070436	Serpinh1	BERF-1|Cbp1|Cbp2|Hsp47|J6|Serpinh2|gp46	serine (or cysteine) peptidase inhibitor, clade H, member 1	protein-coding	0.080000	0.651741	
mm_110762.1	chr12	70136169	70136369	-	1	NA	NA	NA	-17902	NM_001195033	100504285	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	0.010000	0.532338	
mm_84386.1	chr9	65422889	65423089	-	1	NA	NA	NA	-216	NM_178933	330962	Mm.335247	NM_178933	ENSMUSG00000053862	Slc51b	Ostb	solute carrier family 51, beta subunit	protein-coding	0.020000	0.532338	
mm_41746.1	chr5	102840955	102841155	+	1	NA	NA	NA	-3952	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.015000	0.487562	41(TCCTTTTAAAGC,-,0.00),42(CCTTTTAAAGCA,+,0.00)
mm_166725.1	chr6	121630336	121630536	+	1	NA	NA	NA	-5737	NM_175628	232345	Mm.30151	NM_175628	ENSMUSG00000030111	A2m	A2mp	alpha-2-macroglobulin	protein-coding	0.010000	0.407960	
mm_7491.1	chr1	121332457	121332657	-	1	NA	NA	NA	32	NM_178082	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.000000	0.437811	
mm_25358.1	chr3	107090822	107091022	+	1	NA	NA	NA	-10645	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.005000	0.477612	-75(GCACATAAAAGA,-,0.00)
mm_9329.1	chr1	171849434	171849634	-	1	NA	NA	NA	9837	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.010000	0.422886	
mm_46209.1	chr5	98031418	98031618	-	1	NA	NA	NA	-556	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.035000	0.452736	
mm_102328.1	chr11	57801373	57801573	-	1	NA	NA	NA	-6	NR_131042	76516	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	0.065000	0.597015	
mm_14483.1	chr2	131561512	131561712	+	1	NA	NA	NA	673	NM_013460	11550	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	0.070000	0.621891	
mm_124169.1	chr14	93719141	93719341	-	1	NA	NA	NA	169647	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.393035	
mm_88798.1	chr10	80695480	80695680	+	1	NA	NA	NA	6240	NM_172457	208228	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.010000	0.542289	
mm_89497.1	chr10	93897059	93897259	+	1	NA	NA	NA	-5957	NM_019648	56307	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	0.005000	0.457711	
mm_89830.1	chr10	106470224	106470424	+	1	NA	NA	NA	14	NM_001205341	327814	Mm.391424	NM_177373	ENSMUSG00000053825	Ppfia2	5330438O12|B230207K17Rik|E130120L08Rik|mKIAA4112	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding	0.055000	0.562189	-69(GCTTTAAGAACC,+,0.00)
mm_33409.1	chr4	129848599	129848799	+	1	NA	NA	NA	27991	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.000000	0.402985	
mm_104804.1	chr11	98775131	98775331	-	1	NA	NA	NA	146	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.055000	0.587065	
mm_99177.1	chr11	100859777	100859977	+	1	NA	NA	NA	526	NM_011488	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.020000	0.492537	-87(CGGCTTTAAGGG,-,0.00),-86(GGCTTTAAGGGG,-,0.00),-85(GCTTTAAGGGGG,+,0.00)
mm_81977.1	chr9	121300612	121300812	+	1	NA	NA	NA	-23540	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.000000	0.398010	
mm_142435.1	chr17	45570696	45570896	-	1	NA	NA	NA	2465	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.025000	0.442786	
mm_125875.1	chr15	75616660	75616860	+	1	NA	NA	NA	76	NM_011759	22701	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0.120000	0.701493	-52(GCCTTTAGGCGC,+,0.00)
mm_145147.1	chr18	45593245	45593445	+	1	NA	NA	NA	33191	NM_080465	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.005000	0.338308	
mm_68842.1	chr7	126364747	126364947	-	1	NA	NA	NA	3198	NR_106025	102466797		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.005000	0.557214	
mm_60050.1	chr7	31059972	31060172	+	1	NA	NA	NA	137	NM_144556	243914	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	0.010000	0.651741	
mm_87224.1	chr10	40426708	40426908	+	1	NA	NA	NA	77500	NM_001291816	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.005000	0.378109	
mm_114181.1	chr13	55645296	55645496	+	1	NA	NA	NA	10397	NM_001282055	212880	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	0.025000	0.542289	
mm_108163.1	chr12	76370392	76370592	+	1	NA	NA	NA	226	NM_178744	268564	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.135000	0.761194	
mm_166366.1	chr5	124451220	124451420	+	1	NA	NA	NA	4616	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.030000	0.567164	
mm_123788.1	chr14	70428984	70429184	-	1	NA	NA	NA	10	NM_021308	57746	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	0.055000	0.646766	
mm_16802.1	chr2	10119468	10119668	-	1	NA	NA	NA	11115	NM_010582	16425	Mm.182043	NM_010582	ENSMUSG00000037254	Itih2	AI747202|Intin2|Itih-2	inter-alpha trypsin inhibitor, heavy chain 2	protein-coding	0.020000	0.512438	
mm_89801.1	chr10	102512402	102512602	+	1	NA	NA	NA	280	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding	0.010000	0.457711	-84(GAGTTGAAAAGG,-,0.00)
mm_137371.1	chr17	25570735	25570935	+	1	NA	NA	NA	24	NR_045176	72834	Mm.33042	NR_045176	ENSMUSG00000091475	2810468N07Rik	-	RIKEN cDNA 2810468N07 gene	ncRNA	0.070000	0.686567	
mm_77390.1	chr8	120227985	120228185	-	1	NA	NA	NA	145	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.025000	0.621891	
mm_149086.1	chr19	8920367	8920567	+	1	NA	NA	NA	74	NM_024256	72727	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	0.115000	0.781095	
mm_142425.1	chr17	45569208	45569408	-	1	NA	NA	NA	3953	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.030000	0.457711	-90(TTCTTTTAAAGC,-,0.00),-89(TCTTTTAAAGCT,+,0.00)
mm_116013.1	chr13	24703418	24703618	-	1	NA	NA	NA	58419	NM_020567	57441	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.015000	0.462687	
mm_157889.1	chrX	75875026	75875226	-	1	NA	NA	NA	44	NM_001166453	102866	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	0.040000	0.582090	
mm_34817.1	chr4	154942911	154943111	+	1	NA	NA	NA	-14934	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.020000	0.477612	
mm_122196.1	chr14	31781307	31781507	-	1	NA	NA	NA	49008	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.015000	0.422886	
mm_149011.1	chr19	8735700	8735900	+	1	NA	NA	NA	-39	NM_134139	107071	Mm.29627	NM_134139	ENSMUSG00000042729	Wdr74	5730436H21Rik|AA407588	WD repeat domain 74	protein-coding	0.075000	0.611940	
mm_75315.1	chr8	41346043	41346243	-	1	NA	NA	NA	28554	NM_019734	11886	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	0.010000	0.398010	
mm_100365.1	chr11	119022968	119023168	+	1	NA	NA	NA	47	NM_007623	12416	Mm.14547	NM_007623	ENSMUSG00000025577	Cbx2	M33|MOD2|pc	chromobox 2	protein-coding	0.165000	0.781095	
mm_148220.1	chr18	80255933	80256133	-	1	NA	NA	NA	-193	NM_001164424	66943	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.065000	0.592040	
mm_42008.1	chr5	108065575	108065775	+	1	NA	NA	NA	1	NM_013827	17765	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0.110000	0.676617	
mm_51500.1	chr6	83108993	83109193	+	1	NA	NA	NA	-15	NM_026744	68499	Mm.333183	NM_026744	ENSMUSG00000030037	Mrpl53	1110007K17Rik	mitochondrial ribosomal protein L53	protein-coding	0.115000	0.636816	
mm_161773.1	chr17	37492250	37492450	+	1	NA	NA	NA	-118	NM_146328	258325	Mm.484339	NM_146328	ENSMUSG00000090894	Olfr110	MOR249-2	olfactory receptor 110	protein-coding	0.000000	0.432836	
mm_42280.1	chr5	114175814	114176014	+	1	NA	NA	NA	10396	NM_133904	100705	Mm.81793	NM_133904	ENSMUSG00000042010	Acacb	AI597064|AW743042|Acc2|Accb	acetyl-Coenzyme A carboxylase beta	protein-coding	0.060000	0.686567	
mm_72032.1	chr8	70765966	70766166	+	1	NA	NA	NA	597	NM_023065	65972	Mm.30241	NM_023065	ENSMUSG00000031838	Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	0.060000	0.597015	
mm_159267.1	chr2	160327313	160327513	-	1	NA	NA	NA	81	NM_001033411	329554	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.015000	0.592040	
mm_9316.1	chr1	171648271	171648471	-	1	NA	NA	NA	628	NM_001347184	75345	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	0.010000	0.398010	
mm_54983.1	chr6	48741368	48741568	-	1	NA	NA	NA	2421	NM_008376	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.010000	0.547264	
mm_143147.1	chr17	57222238	57222438	-	1	NA	NA	NA	-5110	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.015000	0.537313	
mm_8797.1	chr1	161788403	161788603	-	1	NA	NA	NA	-8	NM_010177	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.025000	0.492537	
mm_52627.1	chr6	117174121	117174321	+	1	NA	NA	NA	5686	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.025000	0.552239	
mm_7530.1	chr1	124278773	124278973	-	1	NA	NA	NA	-233314	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.363184	
mm_99907.1	chr11	109754940	109755140	+	1	NA	NA	NA	-32784	NM_153782	208659	Mm.208662	NM_153782	ENSMUSG00000020614	Fam20a	AI606893	family with sequence similarity 20, member A	protein-coding	0.005000	0.393035	
mm_94424.1	chr11	6230234	6230434	+	1	NA	NA	NA	-89	NM_207242	237636	Mm.212492	NM_207242	ENSMUSG00000020447	Npc1l1	9130221N23Rik|Gm243	NPC1-like 1	protein-coding	0.030000	0.487562	
mm_165771.1	chr3	122245644	122245844	+	1	NA	NA	NA	187	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.140000	0.726368	
mm_168931.1	chr12	65916002	65916202	+	1	NA	NA	NA	368299	NM_001162933	238217	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding	0.040000	0.592040	
mm_29526.1	chr3	116645599	116645799	-	1	NA	NA	NA	16978	NM_008246	15247	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	0.005000	0.383085	
mm_155190.1	chrX	56454720	56454920	+	1	NA	NA	NA	-19	NM_172779	236790	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	0.025000	0.497512	
mm_158799.1	chrX	167244773	167244973	-	1	NA	NA	NA	19456	NM_001313761	170744	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	0.010000	0.328358	
mm_11311.1	chr2	30286289	30286489	+	1	NA	NA	NA	-35	NM_177648	227697	Mm.26690	NM_177648	ENSMUSG00000075419	Dolk	BC026973|Tmem15|mKIAA1094	dolichol kinase	protein-coding	0.105000	0.731343	
mm_155757.1	chrX	96167488	96167688	+	1	NA	NA	NA	71543	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.000000	0.422886	
mm_121667.1	chr14	12346005	12346205	-	1	NA	NA	NA	-240	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	0.080000	0.577114	
mm_105814.1	chr11	111512364	111512564	-	1	NA	NA	NA	446300	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.015000	0.447761	-25(GGGTATAAAAGG,-,0.00)
mm_64452.1	chr7	142659009	142659209	+	1	NA	NA	NA	-305	NM_010514	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.105000	0.721393	
mm_70918.1	chr8	25754403	25754603	+	1	NA	NA	NA	-223	NM_028102	72108	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	0.110000	0.686567	
mm_57949.1	chr6	134920192	134920392	-	1	NA	NA	NA	-109	NM_009875	12576	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	0.135000	0.701493	
mm_117473.1	chr13	76271217	76271417	-	1	NA	NA	NA	-113644	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.010000	0.432836	
mm_5686.1	chr1	43183545	43183745	-	1	NA	NA	NA	13116	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.000000	0.283582	
mm_165118.1	chr19	60890194	60890394	+	1	NA	NA	NA	545	NM_018869	14773	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	0.070000	0.676617	
mm_163231.1	chr11	103262308	103262508	-	1	NA	NA	NA	4993	NM_016896	53859	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.010000	0.522388	
mm_44525.1	chr5	24392589	24392789	-	1	NA	NA	NA	-546	NM_001002897	213948	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0.015000	0.537313	
mm_88857.1	chr10	80930688	80930888	+	1	NA	NA	NA	697	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.030000	0.512438	
mm_95335.1	chr11	46815437	46815637	+	1	NA	NA	NA	4738	NM_178759	276891	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.020000	0.482587	
mm_131232.1	chr16	10479831	10480031	+	1	NA	NA	NA	-141	NM_001302619	12265	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.010000	0.407960	-52(CTCTATAAAAAA,-,0.00)
mm_144748.1	chr18	35599144	35599344	+	1	NA	NA	NA	577	NM_026420	67869	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	0.075000	0.567164	
mm_114214.1	chr13	56173370	56173570	+	1	NA	NA	NA	5415	NM_145976	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.010000	0.572139	
mm_137635.1	chr17	28329532	28329732	+	1	NA	NA	NA	1161	NM_011287	19896	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.010000	0.527363	
mm_121678.1	chr14	12822819	12823019	-	1	NA	NA	NA	160	NM_001042617	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	0.110000	0.691542	
mm_73353.1	chr8	105453464	105453664	+	1	NA	NA	NA	17858	NM_026481	67971	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0.005000	0.348259	
mm_131668.1	chr16	20654338	20654538	+	1	NA	NA	NA	2786	NM_134101	21762	Mm.243234	NM_134101	ENSMUSG00000006998	Psmd2	9430095H01Rik|AA407121|TEG-190|Tex190	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	protein-coding	0.000000	0.338308	
mm_104102.1	chr11	86704867	86705067	-	1	NA	NA	NA	20886	NM_001098810	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.010000	0.402985	
mm_56578.1	chr6	106749089	106749289	-	1	NA	NA	NA	-152	NM_008370	16192	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	0.015000	0.462687	
mm_161973.1	chr19	11819260	11819460	-	1	NA	NA	NA	43	NM_001286543	20908	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.050000	0.512438	
mm_141099.1	chr17	26004798	26004998	-	1	NA	NA	NA	16962	NM_153140	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.030000	0.577114	
mm_161771.1	chr17	37002310	37002510	+	1	NA	NA	NA	-72	NM_001168501	22715	Mm.305561	NM_009559	ENSMUSG00000036036	Zfp57	G19|Zfp-57	zinc finger protein 57	protein-coding	0.030000	0.537313	
mm_56595.1	chr6	108552995	108553195	-	1	NA	NA	NA	63352	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.005000	0.402985	
mm_43398.1	chr5	135783246	135783446	+	1	NA	NA	NA	4697	NM_008617	17448	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	0.015000	0.537313	
mm_80843.1	chr9	98287335	98287535	+	1	NA	NA	NA	-9148	NM_144533	74080	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	0.005000	0.487562	
mm_84650.1	chr9	71592190	71592390	-	1	NA	NA	NA	70	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	0.090000	0.686567	
mm_68195.1	chr7	104379534	104379734	-	1	NA	NA	NA	-20988	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.000000	0.437811	-62(TCTTTTAGACAG,+,0.00)
mm_142725.1	chr17	48167176	48167376	-	1	NA	NA	NA	-19	NM_178796	328830	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0.005000	0.507463	
mm_108325.1	chr12	79769988	79770188	+	1	NA	NA	NA	154645	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.025000	0.442786	
mm_13535.1	chr2	110600693	110600893	+	1	NA	NA	NA	3494	NM_001177624	241612	Mm.277148	NM_001003915	ENSMUSG00000041644	Slc5a12	AI315119|D630015G19|SMCT2	solute carrier family 5 (sodium/glucose cotransporter), member 12	protein-coding	0.000000	0.442786	
mm_163986.1	chr14	61147418	61147618	+	1	NA	NA	NA	9061	NM_172809	50720	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik|mKIAA0730	sacsin	protein-coding	0.030000	0.472637	
mm_18961.1	chr2	76798287	76798487	-	1	NA	NA	NA	123072	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.015000	0.402985	
mm_42158.1	chr5	112206670	112206870	+	1	NA	NA	NA	7	NR_045378	75569	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	0.025000	0.577114	
mm_121850.1	chr14	20656398	20656598	-	1	NA	NA	NA	42	NM_021508	59011	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0.045000	0.577114	
mm_59360.1	chr7	25687209	25687409	+	1	NA	NA	NA	307	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.060000	0.601990	
mm_35717.1	chr4	44526330	44526530	-	1	NA	NA	NA	-176370	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0.020000	0.368159	
mm_16679.1	chr2	6872457	6872657	-	1	NA	NA	NA	-522	NM_001347094	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.195000	0.820896	
mm_135765.1	chr16	56717434	56717634	-	1	NA	NA	NA	-84	NM_019678	21787	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0.095000	0.661692	
mm_110876.1	chr12	73949742	73949942	-	1	NA	NA	NA	-14688	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.125000	0.736318	
mm_58947.1	chr7	18646894	18647094	+	1	NA	NA	NA	9731	NM_027403	72242	Mm.326858	NM_027403	ENSMUSG00000070796	Psg21	1600019C01Rik|1600025N01Rik|1600026N13Rik|cea8	pregnancy-specific glycoprotein 21	protein-coding	0.000000	0.452736	
mm_156966.1	chrX	169994487	169994687	+	1	NA	NA	NA	-15670	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.497512	
mm_62801.1	chr7	112856506	112856706	+	1	NA	NA	NA	97222	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.020000	0.477612	
mm_104107.1	chr11	86711299	86711499	-	1	NA	NA	NA	27318	NM_001098810	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.015000	0.457711	
mm_162946.1	chr10	130592810	130593010	-	1	NA	NA	NA	-95531	NM_001103366	625131	Mm.469844	NM_001103366	ENSMUSG00000091511	Vmn2r87	EG625131	vomeronasal 2, receptor 87	protein-coding	0.025000	0.527363	
mm_111440.1	chr12	95292622	95292822	-	1	NA	NA	NA	-399504	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.005000	0.432836	
mm_165141.1	chr2	15054942	15055142	-	1	NA	NA	NA	-170	NM_001165943	74455	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	0.100000	0.691542	
mm_168292.1	chr11	102455741	102455941	+	1	NA	NA	NA	-8178	NM_199200	217219	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0.060000	0.671642	
mm_127222.1	chr15	99393504	99393704	+	1	NA	NA	NA	385	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.030000	0.582090	
mm_139794.1	chr17	65954029	65954229	+	1	NA	NA	NA	-2942	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.010000	0.537313	
mm_81343.1	chr9	108559684	108559884	+	1	NA	NA	NA	-717	NM_011830	23918	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine 5'-phosphate dehydrogenase 2	protein-coding	0.015000	0.422886	
mm_95069.1	chr11	32554872	32555072	+	1	NA	NA	NA	21706	NM_009288	20868	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.020000	0.452736	
mm_163557.1	chr13	24327161	24327361	+	1	NA	NA	NA	-143	NM_001284519	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.015000	0.482587	
mm_107222.1	chr12	26470342	26470542	+	1	NA	NA	NA	1227	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.010000	0.412935	
mm_12425.1	chr2	70563348	70563548	+	1	NA	NA	NA	-91	NR_040496	68986	Mm.437697	NR_040496	ENSMUSG00000087264	Gad1os	1500002O10Rik	glutamate decarboxylase 1, opposite strand	ncRNA	0.065000	0.671642	
mm_90143.1	chr10	118112423	118112623	+	1	NA	NA	NA	-29264	NM_001162904	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.010000	0.512438	
mm_77534.1	chr8	123028888	123029088	-	1	NA	NA	NA	13296	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.000000	0.417910	
mm_159663.1	chr4	152038272	152038472	-	1	NA	NA	NA	118	NM_031867	110326	Mm.29232	NM_031867	ENSMUSG00000028950	Tas1r1	Gpr70|T1r1|TR1	taste receptor, type 1, member 1	protein-coding	0.015000	0.597015	-12(GCTTTTCTGGGC,+,0.00)
mm_108919.1	chr12	100778980	100779180	+	1	NA	NA	NA	-43	NM_145448	217830	Mm.218590	NM_145448	ENSMUSG00000021185	9030617O03Rik	-	RIKEN cDNA 9030617O03 gene	protein-coding	0.015000	0.601990	
mm_162295.1	chr1	33738685	33738885	-	1	NA	NA	NA	18366	NM_001159729	19335	Mm.86744	NM_008999	ENSMUSG00000004768	Rab23	AW545388|opb|opb2	RAB23, member RAS oncogene family	protein-coding	0.025000	0.522388	
mm_153591.1	chr19	43524659	43524859	-	1	NA	NA	NA	-154	NM_010324	14718	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.040000	0.547264	
mm_168967.1	chr12	81439075	81439275	+	1	NA	NA	NA	-17136	NM_009620	11498	Mm.408462	NM_009620	ENSMUSG00000072972	Adam4	AV274654|tMDCV	a disintegrin and metallopeptidase domain 4	protein-coding	0.045000	0.517413	-29(GCCTATAAAAGC,-,0.00)
mm_91144.1	chr10	19907536	19907736	-	1	NA	NA	NA	38	NM_008822	18634	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	0.130000	0.661692	
mm_64188.1	chr7	141460896	141461096	+	1	NA	NA	NA	-98	NM_001025103	213573	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.030000	0.606965	
mm_23469.1	chr3	60479742	60479942	+	1	NA	NA	NA	7012	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.000000	0.248756	
mm_28131.1	chr3	87112341	87112541	-	1	NA	NA	NA	62306	NM_001170985	170643	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kin of IRRE like (Drosophila)	protein-coding	0.005000	0.492537	
mm_80925.1	chr9	101991663	101991863	+	1	NA	NA	NA	313212	NR_106163	102466241		NR_106163	ENSMUSG00000098521	Mir7243	Gm27363|mmu-mir-7243	microRNA 7243	ncRNA	0.005000	0.462687	
mm_76465.1	chr8	85380640	85380840	-	1	NA	NA	NA	301	NM_001297612	213435	Mm.32804	NM_175441	ENSMUSG00000031698	Mylk3	D830007F02Rik|MLCK	myosin light chain kinase 3	protein-coding	0.010000	0.517413	
mm_35365.1	chr4	32441909	32442109	-	1	NA	NA	NA	24574	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.015000	0.467662	
mm_172673.1	chr8	46229392	46229592	+	1	NA	NA	NA	-18483	NM_007450	11739	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	0.040000	0.587065	
mm_35653.1	chr4	43534240	43534440	-	1	NA	NA	NA	-10786	NM_001277875	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.025000	0.601990	
mm_30077.1	chr3	138002615	138002815	-	1	NA	NA	NA	-21166	NM_001310753	26377	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.025000	0.487562	
mm_23715.1	chr3	69005206	69005406	+	1	NA	NA	NA	334	NM_133786	70099	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	0.080000	0.721393	
mm_100860.1	chr11	5878125	5878325	-	1	NA	NA	NA	31	NM_008894	18972	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	0.115000	0.701493	
mm_12616.1	chr2	74691871	74692071	+	1	NA	NA	NA	80	NM_013554	15430	Mm.24420	NM_013554	ENSMUSG00000050368	Hoxd10	AI385591|AI874987|Hox-4.5|Hox-5.3	homeobox D10	protein-coding	0.020000	0.452736	
mm_9790.1	chr1	181816493	181816693	-	1	NA	NA	NA	25808	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.005000	0.223881	
mm_159005.1	chr1	160351224	160351424	-	1	NA	NA	NA	247	NM_001038621	29809	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0.025000	0.552239	
mm_107665.1	chr12	52854630	52854830	+	1	NA	NA	NA	155347	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.015000	0.467662	
mm_68598.1	chr7	116202258	116202458	-	1	NA	NA	NA	-3797	NM_001305189	233765	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.025000	0.517413	
mm_36377.1	chr4	76800578	76800778	-	1	NA	NA	NA	1411217	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.288557	-94(GCTTATAAAGAA,+,0.00)
mm_83889.1	chr9	55589991	55590191	-	1	NA	NA	NA	48942	NM_027397	104360	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0.005000	0.348259	12(TCCTATAAAGCG,+,0.00)
mm_31704.1	chr4	62583433	62583633	+	1	NA	NA	NA	23686	NM_019492	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.095000	0.711443	
mm_117061.1	chr13	58610792	58610992	-	1	NA	NA	NA	-15	NM_022317	114304	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.015000	0.572139	-19(TCATTTAAAAGG,-,0.00)
mm_58984.1	chr7	19080561	19080761	+	1	NA	NA	NA	-3188	NR_126095	13400	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	0.030000	0.616915	
mm_165919.1	chr4	59134499	59134699	-	1	NA	NA	NA	-54951	NM_011673	22234	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.005000	0.358209	44(CCCTCTATAAGA,-,0.00),68(TTCTCTAAAAGG,-,0.00)
mm_44333.1	chr5	14723615	14723815	-	1	NA	NA	NA	191174	NM_198666	381714	Mm.368256	NM_198666	ENSMUSG00000033219	Gm9758	ENSMUSG00000033219	predicted gene 9758	protein-coding	0.005000	0.412935	
mm_143525.1	chr17	73883856	73884056	-	1	NA	NA	NA	66240	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.010000	0.442786	
mm_116868.1	chr13	55018103	55018303	-	1	NA	NA	NA	2616	NM_001206390	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.030000	0.407960	
mm_116158.1	chr13	30551286	30551486	-	1	NA	NA	NA	-6070	NM_025710	66694	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0.015000	0.507463	
mm_81857.1	chr9	118703404	118703604	+	1	NA	NA	NA	-8188	NM_001113514	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.005000	0.462687	
mm_8065.1	chr1	135441265	135441465	-	1	NA	NA	NA	-10874	NM_153774	226432	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9|mKIAA1192	importin 9	protein-coding	0.015000	0.422886	
mm_71008.1	chr8	31114998	31115198	+	1	NA	NA	NA	3252	NM_175136	68867	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	0.005000	0.477612	
mm_110114.1	chr12	26443640	26443840	-	1	NA	NA	NA	12712	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.005000	0.417910	
mm_25061.1	chr3	99140968	99141168	+	1	NA	NA	NA	-22	NM_027462	70560	Mm.316754	NM_027462	ENSMUSG00000004233	Wars2	5730427B17Rik|9430020O07Rik|AI413375|TrpRS	tryptophanyl tRNA synthetase 2 (mitochondrial)	protein-coding	0.090000	0.626866	
mm_66083.1	chr7	30956975	30957175	-	1	NA	NA	NA	-272	NM_011680	22282	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0.135000	0.736318	
mm_169197.1	chr13	66203609	66203809	+	1	NA	NA	NA	90256	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.010000	0.507463	
mm_102045.1	chr11	52000272	52000472	-	1	NA	NA	NA	94	NM_009458	22210	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	2610301N02Rik|E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0.095000	0.656716	
mm_121700.1	chr14	14423126	14423326	-	1	NA	NA	NA	76731	NM_008369	16188	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0.020000	0.452736	
mm_72160.1	chr8	72218928	72219128	+	1	NA	NA	NA	-702	NM_026455	67922	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	0.020000	0.457711	
mm_91620.1	chr10	41685894	41686094	-	1	NA	NA	NA	-79399	NM_001303469	75973	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0.000000	0.333333	
mm_37096.1	chr4	116611257	116611457	-	1	NA	NA	NA	-13727	NR_029450	654318	Mm.255685	NR_029450	ENSMUSG00000085408	C530005A16Rik	D930044c15rik	RIKEN cDNA C530005A16 gene	ncRNA	0.010000	0.373134	
mm_124492.1	chr14	121745702	121745902	-	1	NA	NA	NA	-6873	NM_001128307	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.000000	0.323383	
mm_55923.1	chr6	83892758	83892958	-	1	NA	NA	NA	-21495	NM_001166371	18139	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	0.000000	0.417910	
mm_147790.1	chr18	61646570	61646770	-	1	NA	NA	NA	1224	NR_029557	387163		NR_029557	ENSMUSG00000065592	Mir145a	Mir145|Mirn145|mir-145a|mmu-mir-145|mmu-mir-145a	microRNA 145a	ncRNA	0.010000	0.557214	
mm_55349.1	chr6	56797597	56797797	-	1	NA	NA	NA	116	NM_145958	210973	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0.125000	0.736318	
mm_103581.1	chr11	78176540	78176740	-	1	NA	NA	NA	26	NM_080849	140859	Mm.23788	NM_080849	ENSMUSG00000017405	Nek8	4632401F23Rik|b2b1449Clo|jck	NIMA (never in mitosis gene a)-related expressed kinase 8	protein-coding	0.095000	0.636816	
mm_88655.1	chr10	79995180	79995380	+	1	NA	NA	NA	-2328	NM_001347081	27403	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.010000	0.477612	
mm_164320.1	chr16	3907627	3907827	-	1	NA	NA	NA	962	NM_028484	73261	Mm.486226	NM_028484	ENSMUSG00000005983	1700037C18Rik	2810022L20Rik	RIKEN cDNA 1700037C18 gene	protein-coding	0.000000	0.552239	
mm_110343.1	chr12	36156662	36156862	-	1	NA	NA	NA	63	NM_025840	66912	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	0.085000	0.666667	
mm_132494.1	chr16	36935966	36936166	+	1	NA	NA	NA	1083	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.005000	0.472637	
mm_7129.1	chr1	91023980	91024180	-	1	NA	NA	NA	25353	NM_001111312	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.015000	0.477612	43(TCCTTTATGCGC,+,0.00)
mm_56782.1	chr6	116634851	116635051	-	1	NA	NA	NA	-5952	NM_026057	67255	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0.005000	0.417910	
mm_135133.1	chr16	35844232	35844432	-	1	NA	NA	NA	27050	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.010000	0.393035	
mm_116626.1	chr13	48935033	48935233	-	1	NA	NA	NA	32695	NM_001033268	218236	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0.015000	0.388060	
mm_113225.1	chr13	27064250	27064450	+	1	NA	NA	NA	6780	NM_011164	19109	Mm.1270	NM_011164	ENSMUSG00000021342	Prl	AV290867|Gha1|Prl1a1	prolactin	protein-coding	0.015000	0.452736	
mm_24942.1	chr3	96596501	96596701	+	1	NA	NA	NA	-35	NM_001024851	545554	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	0.070000	0.656716	-34(GGCTATAAATAG,-,0.00)
mm_26557.1	chr3	146499635	146499835	+	1	NA	NA	NA	18	NM_001316756	70951	Mm.383235	NM_027617	ENSMUSG00000028188	Spata1	4921536I21Rik|AV266943|SP-2	spermatogenesis associated 1	protein-coding	0.175000	0.830846	
mm_129797.1	chr15	82886605	82886805	-	1	NA	NA	NA	11756	NR_027799	21378	Mm.417272	NR_027799		Tbrg3	TB-11	transforming growth factor beta regulated gene 3	ncRNA	0.000000	0.298507	
mm_79566.1	chr9	58133955	58134155	+	1	NA	NA	NA	-20	NM_001162476	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.020000	0.601990	
mm_71179.1	chr8	40822946	40823146	+	1	NA	NA	NA	37	NM_001025380	546055	Mm.334503	NM_001025380	ENSMUSG00000054033	Adam39	1700056P18Rik	a disintegrin and metallopeptidase domain 39	protein-coding	0.000000	0.358209	-77(CCCTATAAGAGA,-,0.00)
mm_2311.1	chr1	91653312	91653512	+	1	NA	NA	NA	112332	NM_023046	65247	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	0.010000	0.517413	
mm_18104.1	chr2	44988681	44988881	-	1	NA	NA	NA	34396	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.070000	0.572139	
mm_164628.1	chr17	31681283	31681483	+	1	NA	NA	NA	3452	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.015000	0.527363	
mm_165347.1	chr2	119174234	119174434	+	1	NA	NA	NA	-175	NM_001039223	623781	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	OTTMUSG00000015762	predicted gene 14137	protein-coding	0.015000	0.582090	
mm_114090.1	chr13	54621721	54621921	+	1	NA	NA	NA	37	NM_178397	76577	Mm.194459	NM_178397	ENSMUSG00000025873	Faf2	2210404D11Rik|AI462440|Ubxd8|mKIAA0887	Fas associated factor family member 2	protein-coding	0.105000	0.636816	
mm_23089.1	chr3	37044141	37044341	+	1	NA	NA	NA	-19415	NM_009350	21744	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	0.000000	0.348259	
mm_90169.1	chr10	119481417	119481617	+	1	NA	NA	NA	27483	NM_001277293	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding	0.015000	0.348259	
mm_122110.1	chr14	30937979	30938179	-	1	NA	NA	NA	5210	NM_008406	16424	Mm.3227	NM_008406	ENSMUSG00000006529	Itih1	ITI-HC1|Intin1|Itih-1	inter-alpha trypsin inhibitor, heavy chain 1	protein-coding	0.020000	0.517413	
mm_74247.1	chr8	124831045	124831245	+	1	NA	NA	NA	31884	NM_025615	66523	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	0.000000	0.477612	
mm_150221.1	chr19	33961086	33961286	+	1	NA	NA	NA	-62	NM_026334	67717	Mm.329816	NM_026334	ENSMUSG00000024768	Lipf	2310051B21Rik|AV082900	lipase, gastric	protein-coding	0.000000	0.363184	27(TGGTATATAAGG,-,0.00)
mm_103245.1	chr11	70789348	70789548	-	1	NA	NA	NA	23113	NM_001045526	327957	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0.020000	0.492537	
mm_38384.1	chr4	138770815	138771015	-	1	NA	NA	NA	-4820	NM_001347230	18782	Mm.71913	NM_011109	ENSMUSG00000041202	Pla2g2d	Splash|mGIID	phospholipase A2, group IID	protein-coding	0.020000	0.567164	
mm_88579.1	chr10	79687492	79687692	+	1	NA	NA	NA	-1428	NM_001302485	16904	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	0.000000	0.472637	
mm_62929.1	chr7	118633639	118633839	+	1	NA	NA	NA	3	NM_028930	74424	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	0.000000	0.447761	-37(TCTTTAATGGAG,+,0.00)
mm_85980.1	chr9	112166538	112166738	-	1	NA	NA	NA	19311	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.015000	0.328358	
mm_114211.1	chr13	56159176	56159376	+	1	NA	NA	NA	19609	NM_145976	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.030000	0.532338	
mm_110983.1	chr12	77065668	77065868	-	1	NA	NA	NA	-103520	NM_001146176	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.005000	0.542289	
mm_44671.1	chr5	29609808	29610008	-	1	NA	NA	NA	40666	NM_133907	100763	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	0.010000	0.422886	
mm_10911.1	chr2	25372285	25372485	+	1	NA	NA	NA	350	NM_001081085	72080	Mm.250293	NM_001081085	ENSMUSG00000026955	Sapcd2	2010317E24Rik|6030458L21Rik|AL033337|ang	suppressor APC domain containing 2	protein-coding	0.120000	0.651741	
mm_119403.1	chr14	44102560	44102760	+	1	NA	NA	NA	6	NM_007895	13587	Mm.327386	NM_007895	ENSMUSG00000072596	Ear2	EAR-13|EAR-2|ECP|ECP 2|Raf3|Rnase2	eosinophil-associated, ribonuclease A family, member 2	protein-coding	0.005000	0.527363	
mm_60242.1	chr7	43726934	43727134	+	1	NA	NA	NA	14467	NM_001039042	626834	Mm.389891	NM_001039042	ENSMUSG00000054046	Klk13	Egfbp-2|mGk-13	kallikrein related-peptidase 13	protein-coding	0.005000	0.393035	
mm_18873.1	chr2	76215284	76215484	-	1	NA	NA	NA	123269	NM_001081033	241489	Mm.246613	NM_001081033	ENSMUSG00000075270	Pde11a	6330414F14Rik|A630086N24Rik|Gm350|PDE11A1	phosphodiesterase 11A	protein-coding	0.025000	0.472637	
mm_123664.1	chr14	69244480	69244680	-	1	NA	NA	NA	40523	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.015000	0.492537	
mm_90784.1	chr10	6982854	6983054	-	1	NA	NA	NA	-2489	NM_001170801	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.005000	0.462687	
mm_62119.1	chr7	96672580	96672780	+	1	NA	NA	NA	128869	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA	0.010000	0.417910	
mm_131467.1	chr16	17043872	17044072	+	1	NA	NA	NA	-26167	NM_023249	106369	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee-like 1 (Drosophila)	protein-coding	0.010000	0.472637	
mm_114110.1	chr13	54913127	54913327	+	1	NA	NA	NA	-36184	NM_001311128	107448	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	0.025000	0.606965	
mm_69251.1	chr7	127842377	127842577	-	1	NA	NA	NA	669	NM_009294	20909	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.045000	0.562189	
mm_95195.1	chr11	43155576	43155776	+	1	NA	NA	NA	5799	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding	0.010000	0.482587	
mm_170398.1	chr1	86359119	86359319	-	1	NA	NA	NA	236	NM_010880	17975	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	0.155000	0.696517	
mm_163102.1	chr11	69735323	69735523	-	1	NA	NA	NA	23210	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.015000	0.592040	
mm_81368.1	chr9	108808246	108808446	+	1	NA	NA	NA	-34	NM_030729	80987	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	0.165000	0.776119	
mm_45265.1	chr5	64389693	64389893	-	1	NA	NA	NA	78149	NR_040681	69999	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.015000	0.532338	
mm_50107.1	chr6	41533577	41533777	+	1	NA	NA	NA	11901	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.422886	
mm_61167.1	chr7	59229332	59229532	+	1	NA	NA	NA	680	NM_011668	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|mKIAA4216	ubiquitin protein ligase E3A	protein-coding	0.080000	0.711443	
mm_66785.1	chr7	47008309	47008509	-	1	NA	NA	NA	5	NM_175318	101685	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.085000	0.532338	
mm_16535.1	chr2	181579445	181579645	+	1	NA	NA	NA	13	NR_027290	100271841	Mm.438007	NR_027289	ENSMUSG00000010492	Uckl1os	Gm16119|OTTMUSG00000030649	uridine-cytidine kinase 1-like 1, opposite strand	ncRNA	0.015000	0.547264	
mm_45913.1	chr5	89435529	89435729	-	1	NA	NA	NA	22269	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.005000	0.447761	
mm_11081.1	chr2	27714351	27714551	+	1	NA	NA	NA	3868	NM_001290482	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.005000	0.552239	
mm_72287.1	chr8	75126157	75126357	+	1	NA	NA	NA	16748	NM_008566	17218	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0.015000	0.542289	
mm_32329.1	chr4	104343993	104344193	+	1	NA	NA	NA	-23445	NR_104385	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding	0.005000	0.402985	
mm_36639.1	chr4	93335743	93335943	-	1	NA	NA	NA	-332	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.035000	0.502488	
mm_75829.1	chr8	70506261	70506461	-	1	NA	NA	NA	378	NM_025577	66462	Mm.28242	NM_025577	ENSMUSG00000058833	2810428I15Rik	-	RIKEN cDNA 2810428I15 gene	protein-coding	0.030000	0.611940	
mm_21111.1	chr2	153444329	153444529	-	1	NA	NA	NA	50	NM_001001986	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.115000	0.766169	
mm_68273.1	chr7	105596265	105596465	-	1	NA	NA	NA	3751	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.020000	0.417910	
mm_51851.1	chr6	90384413	90384613	+	1	NA	NA	NA	15019	NM_030260	80292	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	0.015000	0.537313	
mm_29438.1	chr3	109812133	109812333	-	1	NA	NA	NA	238226	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.010000	0.383085	
mm_154432.1	chrM	637	837	-	1	NA	NA	NA	NA	NA									0.015000	0.363184	51(CGGTATATAGGC,-,0.00)
mm_101737.1	chr11	43374296	43374496	-	1	NA	NA	NA	65	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.005000	0.482587	
mm_158646.1	chrX	155340653	155340853	-	1	NA	NA	NA	-2293	NM_001313711	53381	Mm.247542	NM_016764	ENSMUSG00000025289	Prdx4	AOE372|Prx-iv|Prx4|TRANK	peroxiredoxin 4	protein-coding	0.000000	0.532338	
mm_127343.1	chr15	100601879	100602079	+	1	NA	NA	NA	-1995	NM_001304965	19009	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0.005000	0.417910	
mm_172035.1	chr6	125163313	125163513	-	1	NA	NA	NA	2360	NM_008084	14433	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0.015000	0.512438	
mm_44332.1	chr5	14723602	14723802	-	1	NA	NA	NA	191187	NM_198666	381714	Mm.368256	NM_198666	ENSMUSG00000033219	Gm9758	ENSMUSG00000033219	predicted gene 9758	protein-coding	0.000000	0.417910	
mm_66686.1	chr7	45824656	45824856	-	1	NA	NA	NA	-9	NM_145963	211480	Mm.68170	NM_145963	ENSMUSG00000058743	Kcnj14	A930026G01Rik|IRK4|Kir2.4	potassium inwardly-rectifying channel, subfamily J, member 14	protein-coding	0.020000	0.691542	
mm_149556.1	chr19	12633263	12633463	+	1	NA	NA	NA	55	NM_145935	107146	Mm.39974	NM_145935	ENSMUSG00000063683	Glyat	A330009E03Rik|ACGNAT|AI195249|AI315345|CAT|GAT	glycine-N-acyltransferase	protein-coding	0.010000	0.442786	
mm_120997.1	chr14	79426535	79426735	+	1	NA	NA	NA	124	NM_001024135	211255	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	0.125000	0.686567	
mm_169134.1	chr13	59468503	59468703	-	1	NA	NA	NA	75848	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.010000	0.452736	
mm_169212.1	chr13	66588833	66589033	-	1	NA	NA	NA	-147815	NM_001290196	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.000000	0.462687	
mm_115237.1	chr13	109926757	109926957	+	1	NA	NA	NA	23048	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.020000	0.472637	
mm_120860.1	chr14	75229249	75229449	+	1	NA	NA	NA	-12938	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.005000	0.537313	
mm_5783.1	chr1	51624306	51624506	-	1	NA	NA	NA	-146007	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.005000	0.427861	
mm_92265.1	chr10	71143528	71143728	-	1	NA	NA	NA	16062	NM_031397	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	BicC family RNA binding protein 1	protein-coding	0.005000	0.452736	
mm_31063.1	chr4	41316703	41316903	+	1	NA	NA	NA	-1902	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.010000	0.557214	
mm_108706.1	chr12	87021269	87021469	+	1	NA	NA	NA	-5195	NM_172583	217733	Mm.110032	NM_172583	ENSMUSG00000034145	Tmem63c	4932420N09|9330187M14Rik	transmembrane protein 63c	protein-coding	0.010000	0.507463	
mm_141805.1	chr17	34549212	34549412	-	1	NA	NA	NA	-14983	NM_010929	18132	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	0.010000	0.502488	
mm_102233.1	chr11	54952325	54952525	-	1	NA	NA	NA	10515	NM_021327	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.015000	0.452736	
mm_5660.1	chr1	42667556	42667756	-	1	NA	NA	NA	27169	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.005000	0.467662	
mm_64842.1	chr7	13009911	13010111	-	1	NA	NA	NA	-211	NM_001024699	232879	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	0.070000	0.611940	
mm_28193.1	chr3	88142084	88142284	-	1	NA	NA	NA	-188	NM_001310587	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.075000	0.686567	
mm_5152.1	chr1	9942444	9942644	-	1	NA	NA	NA	-1	NR_004410	266793		NR_004410	ENSMUSG00000093178	Snord87	MBII-276|Rnu87|U87	small nucleolar RNA, C/D box 87	snoRNA	0.005000	0.378109	-14(GCCTTAATAGCT,+,0.00)
mm_46372.1	chr5	103655626	103655826	-	1	NA	NA	NA	-2	NM_028824	74218	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.110000	0.691542	
mm_149969.1	chr19	29047490	29047690	+	1	NA	NA	NA	107	NR_028360	67329	Mm.394933	NR_028360		1700018L02Rik	-	RIKEN cDNA 1700018L02 gene	ncRNA	0.105000	0.711443	
mm_171037.1	chr2	91705754	91705954	-	1	NA	NA	NA	4738	NM_145528	51897	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	0.015000	0.427861	-42(GAGTTGAAAAGG,-,0.00)
mm_39723.1	chr5	28316782	28316982	+	1	NA	NA	NA	-307	NM_028234	381626	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	0.170000	0.671642	
mm_16186.1	chr2	172977565	172977765	+	1	NA	NA	NA	-2177	NM_012046	26972	Mm.23495	NM_012046	ENSMUSG00000005883	Spo11	AI449549|Spo11a|Spo11b	SPO11 meiotic protein covalently bound to DSB	protein-coding	0.015000	0.592040	
mm_89428.1	chr10	91081997	91082197	+	1	NA	NA	NA	646	NM_001042558	11783	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	0.015000	0.502488	
mm_140834.1	chr17	23669857	23670057	-	1	NA	NA	NA	-3651	NM_181821	353502	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	0.030000	0.631841	
mm_111048.1	chr12	79891034	79891234	-	1	NA	NA	NA	33599	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.005000	0.537313	
mm_158684.1	chrX	160338534	160338734	-	1	NA	NA	NA	-52056	NM_001079847	237175	Mm.213016	NM_178712	ENSMUSG00000031298	Adgrg2	AW212196|B830041D06Rik|Gpr64|Me6	adhesion G protein-coupled receptor G2	protein-coding	0.010000	0.417910	
mm_106731.1	chr12	3891677	3891877	+	1	NA	NA	NA	33	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.035000	0.661692	
mm_170765.1	chr2	161017564	161017764	-	1	NA	NA	NA	91422	NM_173368	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0.015000	0.467662	
mm_63766.1	chr7	131223208	131223408	+	1	NA	NA	NA	48906	NM_175166	71395	Mm.118845	NM_175166	ENSMUSG00000006204	5430419D17Rik	-	RIKEN cDNA 5430419D17 gene	protein-coding	0.000000	0.467662	
mm_12929.1	chr2	85040841	85041041	+	1	NA	NA	NA	3490	NM_001136081	20833	Mm.219793	NM_182990	ENSMUSG00000027067	Ssrp1	C81323|Hmg1-rs1|Hmgi-rs3|Hmgox|T160	structure specific recognition protein 1	protein-coding	0.030000	0.527363	
mm_3769.1	chr1	156365941	156366141	+	1	NA	NA	NA	33949	NM_001198597	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.035000	0.492537	
mm_171254.1	chr3	81616540	81616740	+	1	NA	NA	NA	-185385	NR_138586	320566	Mm.208417	NR_138586	ENSMUSG00000103695	A830029E22Rik	-	RIKEN cDNA A830029E22 gene	ncRNA	0.070000	0.666667	
mm_170895.1	chr2	29065328	29065528	+	1	NA	NA	NA	5165	NM_009442	22130	Mm.252195	NM_009442	ENSMUSG00000026803	Ttf1	AV245725|TTF-1|TTF-I	transcription termination factor, RNA polymerase I	protein-coding	0.020000	0.547264	
mm_163842.1	chr14	19417913	19418113	+	1	NA	NA	NA	184574	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.015000	0.348259	
mm_118089.1	chr13	103773825	103774025	-	1	NA	NA	NA	-9343	NM_172592	218543	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0.065000	0.532338	
mm_40994.1	chr5	77310412	77310612	+	1	NA	NA	NA	28	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.085000	0.597015	
mm_3185.1	chr1	135767720	135767920	+	1	NA	NA	NA	1735	NM_013750	27280	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	0.010000	0.497512	
mm_155620.1	chrX	83582909	83583109	+	1	NA	NA	NA	-95085	NM_021898	100502723	Mm.383210	NM_021898	ENSMUSG00000035522	Tsga8	Halap-X|Halapx	testis specific gene A8	protein-coding	0.005000	0.373134	54(ATCTTTAAAAAC,-,0.00),56(CTTTAAAAACAC,+,0.00)
mm_93915.1	chr10	127067428	127067628	-	1	NA	NA	NA	2733	NM_025982	67125	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	0.010000	0.447761	
mm_114821.1	chr13	91741419	91741619	+	1	NA	NA	NA	-2	NM_028790	74156	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0.090000	0.716418	
mm_51089.1	chr6	67115590	67115790	+	1	NA	NA	NA	-78283	NM_007836	13197	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.000000	0.552239	
mm_88168.1	chr10	69746949	69747149	+	1	NA	NA	NA	-178483	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.005000	0.517413	
mm_133928.1	chr16	3718028	3718228	-	1	NA	NA	NA	-4	NM_001161791	54483	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.030000	0.507463	
mm_163914.1	chr14	35097336	35097536	+	1	NA	NA	NA	202827	NR_029774	723847		NR_029774	ENSMUSG00000065481	Mir346	Mirn346|mir-346|mmu-mir-346	microRNA 346	ncRNA	0.005000	0.402985	
mm_47368.1	chr5	122949105	122949305	-	1	NA	NA	NA	39894	NM_001003953	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.020000	0.522388	-69(CTTCATAAAAGG,-,0.00)
mm_12742.1	chr2	79122616	79122816	+	1	NA	NA	NA	-132710	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.000000	0.432836	
mm_126461.1	chr15	80977514	80977714	+	1	NA	NA	NA	-151	NM_134091	105835	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.015000	0.527363	73(CCTCTAAAGGAC,+,0.00)
mm_3618.1	chr1	152540782	152540982	+	1	NA	NA	NA	84335	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.000000	0.462687	
mm_168758.1	chr12	117398270	117398470	-	1	NA	NA	NA	-61358	NR_044987	432713	Mm.459210	NR_044987	ENSMUSG00000101930	Gm5441	-	predicted gene 5441	ncRNA	0.025000	0.487562	
mm_151492.1	chr19	58680707	58680907	+	1	NA	NA	NA	10442	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.010000	0.422886	
mm_118641.1	chr14	21499130	21499330	+	1	NA	NA	NA	-540	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.055000	0.671642	
mm_118095.1	chr13	103870198	103870398	-	1	NA	NA	NA	50288	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.000000	0.328358	
mm_156450.1	chrX	142708716	142708916	+	1	NA	NA	NA	27090	NM_001199360	209497	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	0.010000	0.368159	
mm_69185.1	chr7	127260548	127260748	-	1	NA	NA	NA	19	NM_023203	66422	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	0.110000	0.671642	
mm_159576.1	chr4	117252278	117252478	+	1	NA	NA	NA	38	NM_029589	68777	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	0.010000	0.497512	
mm_120246.1	chr14	62992302	62992502	+	1	NA	NA	NA	-5675	NM_001039125	654465	Mm.424929	NM_001039125	ENSMUSG00000075573	Defb47	Defb41|EG654465	defensin beta 47	protein-coding	0.015000	0.507463	
mm_168125.1	chr10	22859517	22859717	+	1	NA	NA	NA	-39489	NM_011545	21412	Mm.16497	NM_011545	ENSMUSG00000045680	Tcf21	Pod-1|Pod1|bHLHa23|capsulin|epc|epicardin	transcription factor 21	protein-coding	0.025000	0.537313	
mm_163835.1	chr14	19417694	19417894	-	1	NA	NA	NA	184793	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.030000	0.373134	
mm_141377.1	chr17	29078737	29078937	-	1	NA	NA	NA	289	NR_036469	100504267	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|OTTMUSG00000031656|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0.025000	0.447761	
mm_146873.1	chr18	25477825	25478025	-	1	NA	NA	NA	276058	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.000000	0.383085	
mm_85732.1	chr9	108431728	108431928	-	1	NA	NA	NA	-3346	NM_001135198	434438	Mm.425598	NM_001135198	ENSMUSG00000047220	Ccdc36	-	coiled-coil domain containing 36	protein-coding	0.090000	0.651741	
mm_113591.1	chr13	40918585	40918785	+	1	NA	NA	NA	1051	NM_133219	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.025000	0.437811	
mm_52400.1	chr6	113326902	113327102	+	1	NA	NA	NA	26	NM_010957	18294	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0.085000	0.636816	
mm_88471.1	chr10	77605956	77606156	+	1	NA	NA	NA	-41	NM_001301672	20610	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.160000	0.751244	
mm_67732.1	chr7	90129997	90130197	-	1	NA	NA	NA	-135	NM_001252523	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.165000	0.791045	
mm_47601.1	chr5	125042725	125042925	-	1	NA	NA	NA	39350	NM_028443	73121	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.040000	0.661692	
mm_96285.1	chr11	63061538	63061738	+	1	NA	NA	NA	-21	NM_027660	71062	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0.050000	0.597015	
mm_22203.1	chr2	173578107	173578307	-	1	NA	NA	NA	134	NM_001199955	70065	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	0.110000	0.721393	
mm_49519.1	chr6	29894664	29894864	+	1	NA	NA	NA	-22249	NM_001037740	320609	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0.020000	0.477612	
mm_20382.1	chr2	128818987	128819187	-	1	NA	NA	NA	784	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.035000	0.442786	-13(CCCTTTAAACAC,+,0.00)
mm_75593.1	chr8	61663663	61663863	-	1	NA	NA	NA	-72594	NM_001293774	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.005000	0.437811	
mm_71497.1	chr8	46791836	46792036	+	1	NA	NA	NA	52191	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.005000	0.393035	
mm_104228.1	chr11	88610937	88611137	-	1	NA	NA	NA	-8214	NR_131025	68397	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	0.020000	0.422886	
mm_141903.1	chr17	34956579	34956779	-	1	NA	NA	NA	2559	NM_010478	15511	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	0.005000	0.378109	
mm_115168.1	chr13	107996238	107996438	+	1	NA	NA	NA	-48136	NM_001048250	75616	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	0.010000	0.437811	65(CTGTTTATAAAG,-,0.00),67(GTTTATAAAGAA,+,0.00)
mm_151647.1	chr19	4058988	4059188	-	1	NA	NA	NA	206	NM_144869	225884	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.025000	0.572139	
mm_135087.1	chr16	34518094	34518294	-	1	NA	NA	NA	-4167	NM_177357	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.005000	0.457711	-34(CTACATAAAAGC,-,0.00),42(ACATTTAAAGCC,+,0.00)
mm_58838.1	chr7	16830780	16830980	+	1	NA	NA	NA	-12022	NM_001252458	101540	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.015000	0.577114	
mm_164278.1	chr15	102102883	102103083	+	1	NA	NA	NA	-5	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.020000	0.676617	
mm_70906.1	chr8	25643843	25644043	+	1	NA	NA	NA	3366	NM_001081269	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.000000	0.412935	
mm_79727.1	chr9	62341305	62341505	+	1	NA	NA	NA	62	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.110000	0.626866	
mm_15462.1	chr2	157448656	157448856	+	1	NA	NA	NA	24463	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.010000	0.323383	
mm_74820.1	chr8	23028631	23028831	-	1	NA	NA	NA	-6368	NM_001277281	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.020000	0.527363	
mm_1182.1	chr1	61814000	61814200	+	1	NA	NA	NA	175276	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0.010000	0.383085	
mm_115786.1	chr13	19336961	19337161	-	1	NA	NA	NA	58752	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.547264	
mm_168978.1	chr12	91473787	91473987	-	1	NA	NA	NA	72894	NM_011648	22095	Mm.173847	NM_011648	ENSMUSG00000020963	Tshr	AI481368|hypothroid|hyt|pet	thyroid stimulating hormone receptor	protein-coding	0.075000	0.666667	
mm_54261.1	chr6	28397911	28398111	-	1	NA	NA	NA	23713	NM_028900	74375	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	0.060000	0.577114	
mm_89631.1	chr10	96398688	96398888	+	1	NA	NA	NA	172581	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.020000	0.537313	
mm_133419.1	chr16	86342971	86343171	+	1	NA	NA	NA	-441946	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0.005000	0.422886	-33(GAGTATAAATAG,-,0.00)
mm_167582.1	chr9	45944780	45944980	-	1	NA	NA	NA	-5290	NR_106055	102465659		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.015000	0.502488	
mm_167215.1	chr8	4477627	4477827	+	1	NA	NA	NA	-15678	NM_026058	67260	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0.000000	0.482587	
mm_86090.1	chr9	114933864	114934064	-	1	NA	NA	NA	23	NM_175380	333433	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	0.080000	0.726368	
mm_43450.1	chr5	136136107	136136307	+	1	NA	NA	NA	62	NM_001347492	72041	Mm.486605	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	0.090000	0.611940	
mm_157469.1	chrX	47892378	47892578	-	1	NA	NA	NA	74	NM_053123	93761	Mm.229151	NM_053123	ENSMUSG00000031099	Smarca1	5730494M04Rik|Snf2l	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding	0.060000	0.611940	
mm_74303.1	chr8	126422440	126422640	+	1	NA	NA	NA	39	NM_174987	67892	Mm.31946	NM_174987	ENSMUSG00000051671	Coa6	1810063B05Rik|AI447995	cytochrome c oxidase assembly factor 6	protein-coding	0.105000	0.656716	
mm_49250.1	chr6	17307851	17308051	+	1	NA	NA	NA	311	NM_001243064	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.050000	0.572139	
mm_101506.1	chr11	32200369	32200569	-	1	NA	NA	NA	-190	NM_008374	16199	Mm.384	NM_008374	ENSMUSG00000020279	Il9r	-	interleukin 9 receptor	protein-coding	0.030000	0.562189	
mm_127701.1	chr15	102990851	102991051	+	1	NA	NA	NA	412	NM_010466	15426	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.095000	0.651741	
mm_63757.1	chr7	131110864	131111064	+	1	NA	NA	NA	35319	NM_173409	233918	Mm.78341	NM_173409	ENSMUSG00000013668	4933402N03Rik	4930412O05	RIKEN cDNA 4933402N03 gene	protein-coding	0.015000	0.507463	
mm_94470.1	chr11	6520943	6521143	+	1	NA	NA	NA	-85	NM_178440	246177	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0.005000	0.547264	
mm_135912.1	chr16	67588564	67588764	-	1	NA	NA	NA	32244	NM_001347247	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.010000	0.278607	
mm_106665.1	chr11	121519188	121519388	-	1	NA	NA	NA	54	NM_178763	319530	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.030000	0.532338	
mm_51420.1	chr6	78425879	78426079	+	1	NA	NA	NA	-4	NM_009042	19692	Mm.142731	NM_009042	ENSMUSG00000059654	Reg1	-	regenerating islet-derived 1	protein-coding	0.000000	0.407960	-29(GTATATAAAAGG,-,0.00),36(CTTTTTATAGAA,+,0.00)
mm_91156.1	chr10	20540279	20540479	-	1	NA	NA	NA	7949	NM_001347366	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.000000	0.378109	
mm_112391.1	chr12	119238481	119238681	-	1	NA	NA	NA	-305	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.035000	0.601990	
mm_72558.1	chr8	84073788	84073988	+	1	NA	NA	NA	7052	NM_009055	19724	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	0.025000	0.681592	
mm_48041.1	chr5	136392295	136392495	-	1	NA	NA	NA	-16592	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	0.010000	0.398010	
mm_42954.1	chr5	123036126	123036326	+	1	NA	NA	NA	10594	NM_029112	74890	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0.000000	0.358209	
mm_117492.1	chr13	78197733	78197933	-	1	NA	NA	NA	-184	NR_045195	320174	Mm.393122	NR_045195		A830082K12Rik	-	RIKEN cDNA A830082K12 gene	ncRNA	0.045000	0.597015	-14(GCTTAAAAATCC,+,0.00)
mm_155920.1	chrX	102118389	102118589	+	1	NA	NA	NA	-976	NM_027181	69713	Mm.371635	NM_027181	ENSMUSG00000079480	Pin4	2410002I22Rik|EPVH|Par14	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	protein-coding	0.000000	0.472637	-79(GGGTTTTAAAGC,-,0.00)
mm_116258.1	chr13	34128339	34128539	-	1	NA	NA	NA	1915	NM_023716	73710	Mm.379227	NM_023716	ENSMUSG00000045136	Tubb2b	2410129E14Rik|brdp	tubulin, beta 2B class IIB	protein-coding	0.010000	0.587065	
mm_2226.1	chr1	90857894	90858094	+	1	NA	NA	NA	-14023	NM_001243008	12835	Mm.7562	NM_009935	ENSMUSG00000048126	Col6a3	AI507288|Col6a-3	collagen, type VI, alpha 3	protein-coding	0.010000	0.572139	-51(TCATTTATACCC,+,0.00)
mm_148378.1	chr19	3205747	3205947	+	1	NA	NA	NA	-8144	NR_045304	70011	Mm.393871	NR_045304	ENSMUSG00000100969	1700030N03Rik	1700087C08Rik	RIKEN cDNA 1700030N03 gene	ncRNA	0.095000	0.736318	
mm_4155.1	chr1	171023572	171023772	+	1	NA	NA	NA	4746	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.005000	0.348259	57(GCCTTTAAACTC,+,0.00)
mm_155265.1	chrX	58030802	58031002	+	1	NA	NA	NA	274	NM_009575	22773	Mm.255890	NM_009575	ENSMUSG00000067860	Zic3	Bn|Ka	zinc finger protein of the cerebellum 3	protein-coding	0.030000	0.522388	
mm_154751.1	chrX	10595645	10595845	+	1	NA	NA	NA	110629	NM_019634	21912	Mm.18590	NM_019634	ENSMUSG00000058254	Tspan7	1200014P11Rik|A15|AI323365|Cd231|Mxs1|PE31|R74651|TALLA|Tm4sf2	tetraspanin 7	protein-coding	0.025000	0.522388	-86(GTTTTTAAAAAG,-,0.00)
mm_19462.1	chr2	92392410	92392610	-	1	NA	NA	NA	173	NM_001202446	19099	Mm.2720	NM_011162	ENSMUSG00000027223	Mapk8ip1	IB1|JIP-1|Jip1|Prkm8ip|Skip|mjip-2a	mitogen-activated protein kinase 8 interacting protein 1	protein-coding	0.050000	0.646766	
mm_170959.1	chr2	55671289	55671489	+	1	NA	NA	NA	235419	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.025000	0.502488	
mm_136340.1	chr16	92603058	92603258	-	1	NA	NA	NA	94171	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.020000	0.427861	
mm_38960.1	chr4	150717840	150718040	-	1	NA	NA	NA	-65766	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.010000	0.587065	
mm_150008.1	chr19	29292733	29292933	+	1	NA	NA	NA	32485	NM_013754	27356	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding	0.005000	0.512438	
mm_148224.1	chr18	80345641	80345841	-	1	NA	NA	NA	18513	NM_001190373	240444	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.005000	0.383085	
mm_155060.1	chrX	42432455	42432655	+	1	NA	NA	NA	-70010	NM_011364	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	0.000000	0.467662	-39(GTCTTTTAAAAA,-,0.00),-36(TTTTAAAAAGGC,+,0.00)
mm_31831.1	chr4	70378124	70378324	+	1	NA	NA	NA	32211	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.020000	0.398010	
mm_156352.1	chrX	139333813	139334013	+	1	NA	NA	NA	230	NM_011635	22037	Mm.1297	NM_011635	ENSMUSG00000051257	Trap1a	Tra-P1A	tumor rejection antigen P1A	protein-coding	0.030000	0.547264	
mm_57211.1	chr6	122855940	122856140	-	1	NA	NA	NA	117	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.010000	0.467662	
mm_48099.1	chr5	137066494	137066694	-	1	NA	NA	NA	5678	NM_008871	18787	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.005000	0.407960	
mm_40319.1	chr5	43879829	43880029	+	1	NA	NA	NA	11120	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.010000	0.368159	
mm_8125.1	chr1	136139907	136140107	-	1	NA	NA	NA	8606	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.015000	0.467662	
mm_21445.1	chr2	160364642	160364842	-	1	NA	NA	NA	2323	NM_010658	16658	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.025000	0.427861	
mm_162382.1	chr1	73998420	73998620	-	1	NA	NA	NA	125927	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.010000	0.537313	
mm_78410.1	chr9	30426971	30427171	+	1	NA	NA	NA	-258	NM_028874	102607	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	0.110000	0.721393	
mm_166259.1	chr5	87680794	87680994	+	1	NA	NA	NA	14686	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.417910	
mm_58811.1	chr7	16399972	16400172	+	1	NA	NA	NA	-1124	NM_198631	330474	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.080000	0.611940	
mm_97313.1	chr11	76846420	76846620	+	1	NA	NA	NA	488	NM_007754	12874	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0.125000	0.721393	
mm_62736.1	chr7	111025012	111025212	+	1	NA	NA	NA	-3839	NM_009431	22083	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0.010000	0.532338	
mm_46692.1	chr5	110086221	110086421	-	1	NA	NA	NA	-13648	NM_207279	403178	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0.035000	0.542289	-13(GCTTAAATGGAC,+,0.00)
mm_127450.1	chr15	101270612	101270812	+	1	NA	NA	NA	3866	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.020000	0.621891	
mm_132927.1	chr16	49840268	49840468	+	1	NA	NA	NA	-15286	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.015000	0.492537	
mm_55272.1	chr6	53820850	53821050	-	1	NA	NA	NA	-125	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.080000	0.631841	
mm_141613.1	chr17	32810655	32810855	-	1	NA	NA	NA	-824	NM_183177	240063	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	0.005000	0.442786	-71(CTTCTTATAGAC,+,0.00)
mm_113964.1	chr13	51642586	51642786	+	1	NA	NA	NA	-2546	NM_025415	66197	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0.010000	0.462687	
mm_86432.1	chr10	3863730	3863930	+	1	NA	NA	NA	-8837	NM_001033253	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.025000	0.507463	
mm_119930.1	chr14	54969225	54969425	+	1	NA	NA	NA	538	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.015000	0.527363	-32(TCTTTTAGGCTC,+,0.00)
mm_65171.1	chr7	19681288	19681488	-	1	NA	NA	NA	72	NM_007385	11425	Mm.477720	NM_007385	ENSMUSG00000074336	Apoc4	Acl|apo-CIV|apoC-IV	apolipoprotein C-IV	protein-coding	0.010000	0.587065	
mm_19578.1	chr2	101644765	101644965	-	1	NA	NA	NA	4667	NM_009019	19373	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0.015000	0.412935	
mm_170.1	chr1	13360751	13360951	+	1	NA	NA	NA	11578	NM_001302702	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.010000	0.562189	
mm_92904.1	chr10	83337722	83337922	-	1	NA	NA	NA	-5	NM_177388	338365	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.120000	0.701493	
mm_30192.1	chr3	144700838	144701038	-	1	NA	NA	NA	19397	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.035000	0.572139	
mm_166458.1	chr5	138846948	138847148	+	1	NA	NA	NA	26968	NM_001195128	384244	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0.015000	0.517413	
mm_1294.1	chr1	64532483	64532683	+	1	NA	NA	NA	-221	NM_133828	12912	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.070000	0.646766	
mm_167546.1	chr9	27666323	27666523	+	1	NA	NA	NA	-124846	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.000000	0.502488	
mm_162938.1	chr10	127849956	127850156	+	1	NA	NA	NA	128	NM_147222	216453	Mm.222953	NM_147222	ENSMUSG00000054052	Rdh19	RDH-S|RDH-S2|Rdhs	retinol dehydrogenase 19	protein-coding	0.010000	0.532338	
mm_172805.1	chr9	120131057	120131257	+	1	NA	NA	NA	723	NR_002902	104433	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	0.025000	0.601990	
mm_18271.1	chr2	52335173	52335373	-	1	NA	NA	NA	3525	NM_010889	17996	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	0.020000	0.532338	
mm_101295.1	chr11	22171256	22171456	-	1	NA	NA	NA	115439	NM_153078	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0.015000	0.507463	
mm_4498.1	chr1	173673569	173673769	+	1	NA	NA	NA	-11	NM_001162938	100033459	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|Pydc3|Pyr-rv1	interferon activated gene 208	protein-coding	0.010000	0.452736	
mm_127874.1	chr15	8444539	8444739	-	1	NA	NA	NA	-176	NM_201232	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.070000	0.587065	
mm_22892.1	chr3	30746233	30746433	+	1	NA	NA	NA	40	NR_028060	75953	Mm.308084	NM_029489	ENSMUSG00000051860	Samd7	4930597A01Rik	sterile alpha motif domain containing 7	protein-coding	0.025000	0.512438	-33(TCGTATTTAAGG,-,0.00)
mm_108131.1	chr12	76072075	76072275	+	1	NA	NA	NA	105084	NM_010157	13983	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0.030000	0.507463	-61(GCATTTAAATGC,+,0.00),-61(GCATTTAAATGC,-,0.00)
mm_29559.1	chr3	116807956	116808156	-	1	NA	NA	NA	110	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.145000	0.716418	
mm_97749.1	chr11	80477260	80477460	+	1	NA	NA	NA	314	NM_009871	12569	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0.120000	0.701493	
mm_20241.1	chr2	126489936	126490136	-	1	NA	NA	NA	1517	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	0.005000	0.457711	
mm_153975.1	chr19	47864323	47864523	-	1	NA	NA	NA	-1122	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.020000	0.502488	
mm_171979.1	chr5	89690058	89690258	-	1	NA	NA	NA	73722	NR_037571	631105	Mm.7732	NR_037571		Gm7056	Gm149	predicted gene 7056	ncRNA	0.025000	0.388060	
mm_71489.1	chr8	46745351	46745551	+	1	NA	NA	NA	5706	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.005000	0.402985	
mm_131824.1	chr16	22939254	22939454	+	1	NA	NA	NA	-11718	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.020000	0.567164	
mm_86165.1	chr9	118837995	118838195	-	1	NA	NA	NA	-88441	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.035000	0.557214	
mm_43525.1	chr5	137152757	137152957	+	1	NA	NA	NA	-36650	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.472637	
mm_169350.1	chr14	20980607	20980807	+	1	NA	NA	NA	51274	NM_009502	22330	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0.015000	0.353234	
mm_87783.1	chr10	60296684	60296884	+	1	NA	NA	NA	12323	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.005000	0.328358	
mm_147672.1	chr18	60648208	60648408	-	1	NA	NA	NA	-15102	NR_045401	328963	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.045000	0.656716	
mm_93867.1	chr10	123147221	123147421	-	1	NA	NA	NA	49698	NM_027604	14479	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	0.010000	0.477612	-94(AGCTATAAATAG,-,0.00)
mm_133069.1	chr16	58670271	58670471	+	1	NA	NA	NA	163	NM_007757	12892	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0.070000	0.686567	
mm_141984.1	chr17	35164920	35165120	-	1	NA	NA	NA	-143	NM_020027	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.065000	0.592040	-42(CCCTTTATGCAA,+,0.00)
mm_82750.1	chr9	26829392	26829592	-	1	NA	NA	NA	-23024	NM_001310768	244757	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0.005000	0.333333	
mm_31989.1	chr4	89295202	89295402	+	1	NA	NA	NA	122	NR_132431	102633081	Mm.409388	NR_132431		Gm12610	Gm12609|OTTMUSG00000007716|OTTMUSG00000007717	predicted gene 12610	ncRNA	0.110000	0.706468	
mm_50708.1	chr6	52165609	52165809	+	1	NA	NA	NA	35	NR_131182	105242657	Mm.490651	NR_131182	ENSMUSG00000056445	Hoxaas2	2810043O09Rik|5730446D14Rik	Hoxa cluster antisense RNA 2	ncRNA	0.055000	0.626866	
mm_55104.1	chr6	50245265	50245465	-	1	NA	NA	NA	16404	NM_018769	54722	Mm.248361	NM_018769	ENSMUSG00000029821	Dfna5	2310037D07Rik|4932441K13Rik|Dfna5h|EG14210|Fin15	deafness, autosomal dominant 5 (human)	protein-coding	0.005000	0.412935	
mm_165443.1	chr2	155219593	155219793	+	1	NA	NA	NA	-16840	NR_111891	67068	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	0.010000	0.462687	
mm_54422.1	chr6	32994358	32994558	-	1	NA	NA	NA	65694	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0.000000	0.417910	-34(CACCATATATGG,-,0.00),-32(CCATATATGGCT,+,0.00)
mm_122972.1	chr14	54974663	54974863	-	1	NA	NA	NA	1013	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.015000	0.557214	
mm_95745.1	chr11	54860713	54860913	+	1	NA	NA	NA	-222	NM_029327	75530	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	0.080000	0.532338	
mm_165383.1	chr2	129315753	129315953	-	1	NA	NA	NA	-5881	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.015000	0.467662	
mm_94715.1	chr11	20542831	20543031	+	1	NA	NA	NA	-322	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.070000	0.641791	
mm_92002.1	chr10	62327491	62327691	-	1	NA	NA	NA	12830	NM_001146100	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.015000	0.582090	
mm_147696.1	chr18	60779351	60779551	-	1	NA	NA	NA	4855	NM_020600	20044	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.055000	0.547264	
mm_84034.1	chr9	57765484	57765684	-	1	NA	NA	NA	276	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.115000	0.671642	
mm_114981.1	chr13	97292076	97292276	+	1	NA	NA	NA	51071	NM_007930	13803	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.015000	0.547264	
mm_128354.1	chr15	39944381	39944581	-	1	NA	NA	NA	-487	NM_001347036	239393	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0.035000	0.582090	
mm_28321.1	chr3	89337871	89338071	-	1	NA	NA	NA	57	NM_007910	13639	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	0.080000	0.716418	
mm_63300.1	chr7	126823205	126823405	+	1	NA	NA	NA	2	NM_029978	68952	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0.025000	0.636816	-61(GTCTCTTTAAGG,-,0.00),-59(CTCTTTAAGGGC,+,0.00),-58(TCTTTAAGGGCC,+,0.00)
mm_52531.1	chr6	115774487	115774687	+	1	NA	NA	NA	30	NM_025958	67088	Mm.277683	NM_025958	ENSMUSG00000030319	Cand2	2210404G23Rik|Tp120b|mKIAA0667	cullin-associated and neddylation-dissociated 2 (putative)	protein-coding	0.080000	0.646766	
mm_39539.1	chr5	21424951	21425151	+	1	NA	NA	NA	148	NM_177869	330050	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	0.050000	0.557214	
mm_97625.1	chr11	78957972	78958172	+	1	NA	NA	NA	26852	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.015000	0.542289	
mm_41784.1	chr5	103722838	103723038	+	1	NA	NA	NA	-31224	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.015000	0.492537	
mm_102119.1	chr11	53300435	53300635	-	1	NA	NA	NA	-56	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.105000	0.631841	
mm_15243.1	chr2	154657073	154657273	+	1	NA	NA	NA	147	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.130000	0.771144	
mm_11285.1	chr2	30066601	30066801	+	1	NA	NA	NA	227	NM_001204875	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.135000	0.810945	
mm_138091.1	chr17	34032262	34032462	+	1	NA	NA	NA	12	NM_001205215	20182	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	0.135000	0.761194	
mm_171406.1	chr4	126222473	126222673	-	1	NA	NA	NA	-19863	NM_146153	230753	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0.025000	0.502488	
mm_166266.1	chr5	88328147	88328347	-	1	NA	NA	NA	10935	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.015000	0.507463	
mm_171059.1	chr3	107868575	107868775	-	1	NA	NA	NA	-8555	NM_133867	99662	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0.035000	0.577114	
mm_22471.1	chr3	5218430	5218630	+	1	NA	NA	NA	-24	NM_030708	80892	Mm.41522	NM_030708	ENSMUSG00000025255	Zfhx4	A930021B15|C130041O22Rik|Zfh-4|Zfh4	zinc finger homeodomain 4	protein-coding	0.030000	0.472637	
mm_103057.1	chr11	69822053	69822253	-	1	NA	NA	NA	12	NM_028855	74288	Mm.159159	NM_028855	ENSMUSG00000041165	Spem1	1700095G12Rik	sperm maturation 1	protein-coding	0.020000	0.592040	
mm_8522.1	chr1	154884075	154884275	-	1	NA	NA	NA	-158255	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.015000	0.422886	
mm_24583.1	chr3	93444747	93444947	+	1	NA	NA	NA	2517	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.065000	0.626866	
mm_134087.1	chr16	8792214	8792414	-	1	NA	NA	NA	-37786	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.045000	0.532338	
mm_158175.1	chrX	103888584	103888784	-	1	NA	NA	NA	-66696	NM_009197	20502	Mm.388973	NM_009197	ENSMUSG00000033965	Slc16a2	AW105741|Mct8|Xpct	solute carrier family 16 (monocarboxylic acid transporters), member 2	protein-coding	0.020000	0.447761	-98(CACTATTAAAAG,-,0.00)
mm_1314.1	chr1	65061906	65062106	+	1	NA	NA	NA	1434	NM_007776	12967	Mm.425031	NM_007776	ENSMUSG00000067299	Crygd	Aey4|Cryg-1|DGcry-1|Lop12	crystallin, gamma D	protein-coding	0.035000	0.562189	
mm_170605.1	chr19	5844114	5844314	-	1	NA	NA	NA	1264	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.035000	0.577114	
mm_19518.1	chr2	94010720	94010920	-	1	NA	NA	NA	-90	NM_026944	69113	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	protein-coding	0.075000	0.616915	
mm_50945.1	chr6	58596500	58596700	+	1	NA	NA	NA	-72	NM_011920	26357	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP-binding cassette, sub-family G (WHITE), member 2	protein-coding	0.040000	0.532338	
mm_124136.1	chr14	86721808	86722008	-	1	NA	NA	NA	419206	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding	0.010000	0.457711	
mm_114784.1	chr13	88920285	88920485	+	1	NA	NA	NA	98913	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.005000	0.373134	
mm_155780.1	chrX	96455464	96455664	+	1	NA	NA	NA	128	NM_010417	15203	Mm.277092	NM_010417	ENSMUSG00000031209	Heph	C130006F04Rik|Cpl|mKIAA0698|sla	hephaestin	protein-coding	0.005000	0.492537	
mm_6591.1	chr1	75264171	75264371	-	1	NA	NA	NA	-63	NM_008985	19275	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	0.055000	0.621891	
mm_14563.1	chr2	134991469	134991669	+	1	NA	NA	NA	205405	NM_001145830	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding	0.005000	0.328358	
mm_159103.1	chr2	37331652	37331852	+	1	NA	NA	NA	3	NM_146374	258371	Mm.223061	NM_146374	ENSMUSG00000049018	Olfr368	MOR178-1	olfactory receptor 368	protein-coding	0.015000	0.467662	
mm_139670.1	chr17	57412105	57412305	+	1	NA	NA	NA	53519	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.383085	
mm_18526.1	chr2	63184144	63184344	-	1	NA	NA	NA	43	NM_133207	170738	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.095000	0.671642	
mm_100917.1	chr11	6274758	6274958	-	1	NA	NA	NA	-21	NM_134020	103694	Mm.254495	NM_134020	ENSMUSG00000004394	Tmed4	1110014L17Rik|AI326346	transmembrane p24 trafficking protein 4	protein-coding	0.085000	0.621891	
mm_162786.1	chr10	71662623	71662823	+	1	NA	NA	NA	314960	NM_027184	69718	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.010000	0.427861	
mm_42363.1	chr5	114922159	114922359	+	1	NA	NA	NA	-981	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.020000	0.467662	81(GTGCTTAAATGC,-,0.00)
mm_104690.1	chr11	97782288	97782488	-	1	NA	NA	NA	51	NM_022891	65019	Mm.140380	NM_022891	ENSMUSG00000071415	Rpl23	2810009A01Rik	ribosomal protein L23	protein-coding	0.085000	0.626866	
mm_52741.1	chr6	120465635	120465835	+	1	NA	NA	NA	2538	NM_008359	16172	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.015000	0.492537	-81(TTTTTAAAAGAC,+,0.00)
mm_65366.1	chr7	25072227	25072427	-	1	NA	NA	NA	42	NM_008168	14809	Mm.2879	NM_008168	ENSMUSG00000003378	Grik5	GluK5|GluRgamma2|KA2	glutamate receptor, ionotropic, kainate 5 (gamma 2)	protein-coding	0.025000	0.636816	
mm_55423.1	chr6	65131349	65131549	-	1	NA	NA	NA	13281	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.020000	0.512438	
mm_516.1	chr1	37430088	37430288	+	1	NA	NA	NA	16	NM_026123	67387	Mm.27404	NM_026123	ENSMUSG00000026111	Unc50	1110002A21Rik|GMH1|UNCL|URP	unc-50 homolog (C. elegans)	protein-coding	0.110000	0.676617	
mm_133404.1	chr16	84834984	84835184	+	1	NA	NA	NA	-40	NM_008065	14390	Mm.18974	NM_008065	ENSMUSG00000008976	Gabpa	GABPalpha	GA repeat binding protein, alpha	protein-coding	0.035000	0.547264	
mm_78635.1	chr9	40148022	40148222	+	1	NA	NA	NA	0	NM_029379	75667	Mm.45821	NM_029379	ENSMUSG00000040541	Tmem225	1700030E15Rik|Tnen225	transmembrane protein 225	protein-coding	0.000000	0.427861	
mm_74710.1	chr8	17212874	17213074	-	1	NA	NA	NA	322411	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.005000	0.432836	
mm_70154.1	chr7	143502034	143502234	-	1	NA	NA	NA	390	NM_009434	22113	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	0.090000	0.597015	
mm_172090.1	chr6	18587356	18587556	-	1	NA	NA	NA	-72631	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding	0.035000	0.527363	
mm_37513.1	chr4	123904735	123904935	-	1	NA	NA	NA	-178	NM_019660	56309	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	0.095000	0.641791	
mm_15968.1	chr2	166068947	166069147	+	1	NA	NA	NA	76410	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.025000	0.447761	
mm_21122.1	chr2	153632684	153632884	-	1	NA	NA	NA	-3	NM_133850	99311	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	0.105000	0.641791	
mm_99224.1	chr11	101039783	101039983	+	1	NA	NA	NA	9543	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.030000	0.457711	
mm_83601.1	chr9	48495196	48495396	-	1	NA	NA	NA	34	NM_001326355	67010	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	0.120000	0.676617	
mm_507.1	chr1	37153785	37153985	+	1	NA	NA	NA	-64393	NM_001282010	12790	Mm.214224	NM_009918	ENSMUSG00000026114	Cnga3	CNG3	cyclic nucleotide gated channel alpha 3	protein-coding	0.010000	0.457711	
mm_131883.1	chr16	23224848	23225048	+	1	NA	NA	NA	208	NM_145933	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.055000	0.552239	
mm_40450.1	chr5	53601676	53601876	+	1	NA	NA	NA	11290	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.010000	0.432836	
mm_155810.1	chrX	99820065	99820265	+	1	NA	NA	NA	-904	NM_001081283	620592	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	0.070000	0.701493	
mm_73936.1	chr8	120042840	120043040	+	1	NA	NA	NA	50502	NM_001310635	78892	Mm.264680	NM_030209	ENSMUSG00000031825	Crispld2	1810049K24Rik|Lcrisp2|Lgl1|coffeecrisp	cysteine-rich secretory protein LCCL domain containing 2	protein-coding	0.010000	0.562189	
mm_8335.1	chr1	150099577	150099777	-	1	NA	NA	NA	197	NR_015466	320019	Mm.353072	NR_015466	ENSMUSG00000097028	Ptgs2os	7530420F21Rik	prostaglandin-endoperoxide synthase 2, opposite strand	ncRNA	0.035000	0.532338	-87(GGGCCTAAAAGC,-,0.00)
mm_9952.1	chr1	190979167	190979367	-	1	NA	NA	NA	29	NR_027352	226841	Mm.22856	NM_144879	ENSMUSG00000037568	Vash2	B130052G07Rik	vasohibin 2	protein-coding	0.080000	0.592040	
mm_151891.1	chr19	5798665	5798865	-	1	NA	NA	NA	-2784	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.005000	0.417910	87(GCCTCTTAAAAA,-,0.00)
mm_109963.1	chr12	12493010	12493210	-	1	NA	NA	NA	-100635	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	0.000000	0.412935	
mm_17318.1	chr2	26445745	26445945	-	1	NA	NA	NA	-629	NM_153125	227648	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	0.100000	0.656716	
mm_15178.1	chr2	154190666	154190866	+	1	NA	NA	NA	-52	NM_001012392	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.015000	0.562189	
mm_6599.1	chr1	75317070	75317270	-	1	NA	NA	NA	-153	NM_016878	13437	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	0.070000	0.597015	
mm_34978.1	chr4	156013765	156013965	+	1	NA	NA	NA	170	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.010000	0.522388	-56(GTTCTTATAGCC,+,0.00)
mm_109205.1	chr12	108675412	108675612	+	1	NA	NA	NA	16892	NR_029771	723909		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.015000	0.656716	
mm_136118.1	chr16	85803858	85804058	-	1	NA	NA	NA	-845	NM_009621	11504	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	0.010000	0.393035	
mm_170181.1	chr17	60784219	60784419	+	1	NA	NA	NA	-1770997	NM_026497	67993	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.050000	0.641791	
mm_166681.1	chr6	98785814	98786014	+	1	NA	NA	NA	242384	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.010000	0.467662	
mm_154072.1	chr19	56389906	56390106	-	1	NA	NA	NA	32	NM_198059	18175	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	0.030000	0.497512	-64(AGCTTTAAAAAC,-,0.00),-63(GCTTTAAAAACC,+,0.00)
mm_115774.1	chr13	19308458	19308658	-	1	NA	NA	NA	87255	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.447761	
mm_41482.1	chr5	91963253	91963453	+	1	NA	NA	NA	-285	NM_001271797	68098	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0.040000	0.557214	
mm_17895.1	chr2	35069173	35069373	-	1	NA	NA	NA	-7832	NM_010406	15139	Mm.2168	NM_010406	ENSMUSG00000026874	Hc	C5|C5a|He	hemolytic complement	protein-coding	0.000000	0.447761	
mm_90865.1	chr10	8885997	8886197	-	1	NA	NA	NA	-27	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.080000	0.656716	
mm_146735.1	chr18	15402610	15402810	-	1	NA	NA	NA	289	NM_001308647	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.000000	0.557214	
mm_112280.1	chr12	114366910	114367110	-	1	NA	NA	NA	102456	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.005000	0.492537	
mm_94473.1	chr11	6546820	6547020	+	1	NA	NA	NA	33	NM_001190343	216527	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0.140000	0.800995	
mm_22824.1	chr3	27231446	27231646	+	1	NA	NA	NA	48542	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.005000	0.472637	
mm_12339.1	chr2	69722768	69722968	+	1	NA	NA	NA	-220	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.105000	0.691542	
mm_3492.1	chr1	150105866	150106066	+	1	NA	NA	NA	5935	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.348259	
mm_60231.1	chr7	43671922	43672122	+	1	NA	NA	NA	-9	NM_145582	233189	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.045000	0.567164	
mm_172175.1	chr6	47835731	47835931	+	1	NA	NA	NA	170	NM_027477	272347	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	0.125000	0.716418	
mm_28229.1	chr3	88454743	88454943	-	1	NA	NA	NA	918	NM_013658	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.005000	0.557214	
mm_150790.1	chr19	44303110	44303310	+	1	NA	NA	NA	39	NR_039574	100628619		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.025000	0.522388	
mm_60722.1	chr7	45336067	45336267	+	1	NA	NA	NA	898	NM_010473	15464	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.025000	0.502488	
mm_129676.1	chr15	81398198	81398398	-	1	NA	NA	NA	1396	NM_133726	70356	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	0.000000	0.348259	
mm_33277.1	chr4	128722086	128722286	+	1	NA	NA	NA	-5385	NM_001195083	54383	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic-like 2 (Drosophila)	protein-coding	0.020000	0.452736	
mm_36187.1	chr4	62228428	62228628	-	1	NA	NA	NA	-19982	NM_001290350	22696	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0.030000	0.507463	
mm_17778.1	chr2	32875945	32876145	-	1	NA	NA	NA	-89	NM_146119	227737	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.060000	0.651741	
mm_68831.1	chr7	126200303	126200503	-	1	NA	NA	NA	5	NM_028816	74204	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|mKIAA0370	exportin 6	protein-coding	0.125000	0.761194	
mm_143454.1	chr17	70978433	70978633	-	1	NA	NA	NA	11983	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.005000	0.412935	
mm_92335.1	chr10	75798435	75798635	-	1	NA	NA	NA	49	NM_008185	14871	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	0.045000	0.572139	
mm_43954.1	chr5	145231632	145231832	+	1	NA	NA	NA	7	NM_001347533	72611	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	0.090000	0.691542	
mm_133574.1	chr16	91406273	91406473	+	1	NA	NA	NA	138	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.100000	0.761194	
mm_154352.1	chrM	5798	5998	+	1	NA	NA	NA	NA	NA									0.025000	0.402985	
mm_168296.1	chr11	105181871	105182071	+	1	NA	NA	NA	444	NM_001294329	24086	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	0.120000	0.805970	
mm_37887.1	chr4	132515331	132515531	-	1	NA	NA	NA	-4975	NM_144907	230784	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0.025000	0.487562	
mm_139953.1	chr17	71238399	71238599	+	1	NA	NA	NA	33845	NM_001164885	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.010000	0.427861	
mm_135888.1	chr16	64851604	64851804	-	1	NA	NA	NA	19	NM_001347245	72020	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	0.110000	0.731343	
mm_156731.1	chrX	159940340	159940540	+	1	NA	NA	NA	-2253	NM_001290661	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.005000	0.393035	
mm_143847.1	chr17	84137137	84137337	-	1	NA	NA	NA	50710	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.010000	0.532338	
mm_86038.1	chr9	114368133	114368333	-	1	NA	NA	NA	-91	NR_040383	75116	Mm.72675	NR_040383	ENSMUSG00000074039	4930520O04Rik	-	RIKEN cDNA 4930520O04 gene	ncRNA	0.105000	0.651741	
mm_49773.1	chr6	34873283	34873483	+	1	NA	NA	NA	4682	NM_199145	78412	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.005000	0.497512	
mm_44645.1	chr5	28209753	28209953	-	1	NA	NA	NA	315	NM_001310511	269637	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.105000	0.716418	
mm_67579.1	chr7	82648407	82648607	-	1	NA	NA	NA	21	NM_177894	330577	Mm.222812	NM_177894	ENSMUSG00000038570	Saxo2	1700129I04Rik|D030069K18|Fam154b	stabilizer of axonemal microtubules 2	protein-coding	0.085000	0.641791	
mm_20939.1	chr2	151009277	151009477	-	1	NA	NA	NA	21	NM_207204	78177	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	0.110000	0.776119	
mm_153425.1	chr19	40769446	40769646	-	1	NA	NA	NA	-61733	NM_172839	240665	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.015000	0.477612	
mm_92526.1	chr10	78752961	78753161	-	1	NA	NA	NA	6	NM_027630	70976	Mm.188505	NM_027630	ENSMUSG00000078442	Ccdc105	4931413A09Rik	coiled-coil domain containing 105	protein-coding	0.035000	0.567164	
mm_134884.1	chr16	29378490	29378690	-	1	NA	NA	NA	142	NM_001284375	268878	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	0.015000	0.497512	45(TGCTCTTAATGG,-,0.00)
mm_162540.1	chr1	169693943	169694143	+	1	NA	NA	NA	38542	NM_009063	19737	Mm.20954	NM_009063	ENSMUSG00000026678	Rgs5	1110070A02Rik	regulator of G-protein signaling 5	protein-coding	0.005000	0.442786	76(TCCTATATAGAG,+,0.00),76(TCCTATATAGAG,-,0.00)
mm_142382.1	chr17	44736562	44736762	-	1	NA	NA	NA	-14	NM_001145920	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.050000	0.552239	
mm_100540.1	chr11	120672904	120673104	+	1	NA	NA	NA	31	NM_026877	68938	Mm.294020	NM_026877	ENSMUSG00000025142	Aspscr1	1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG	alveolar soft part sarcoma chromosome region, candidate 1 (human)	protein-coding	0.135000	0.726368	
mm_133673.1	chr16	92291012	92291212	+	1	NA	NA	NA	-1277	NM_134110	246133	Mm.156736	NM_134110	ENSMUSG00000039672	Kcne2	2200002I16Rik|AW048273|MiRP1	potassium voltage-gated channel, Isk-related subfamily, gene 2	protein-coding	0.020000	0.532338	-34(GACTTTAAATGA,-,0.00)
mm_105356.1	chr11	103028234	103028434	-	1	NA	NA	NA	-228	NM_008707	18107	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.065000	0.562189	17(CGCCTTATAGGG,-,0.00),19(CCTTATAGGGTG,+,0.00)
mm_52279.1	chr6	108660389	108660589	+	1	NA	NA	NA	-140	NM_011498	20893	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0.075000	0.686567	
mm_53173.1	chr6	125345708	125345908	+	1	NA	NA	NA	-3915	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.000000	0.547264	
mm_44145.1	chr5	150259772	150259972	+	1	NA	NA	NA	-58	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.030000	0.676617	
mm_159089.1	chr2	31810392	31810592	-	1	NA	NA	NA	88	NM_183424	227717	Mm.185027	NM_183424	ENSMUSG00000043102	Qrfp	P518	pyroglutamylated RFamide peptide	protein-coding	0.015000	0.606965	-32(AGCTTTATAAAG,-,0.00),-30(CTTTATAAAGCG,+,0.00)
mm_33153.1	chr4	125490381	125490581	+	1	NA	NA	NA	-350	NM_001081097	14807	Mm.40896	NM_001081097	ENSMUSG00000001985	Grik3	9630027E11|GluK3|GluR7-3|Glur-7|Glur7	glutamate receptor, ionotropic, kainate 3	protein-coding	0.150000	0.761194	
mm_25840.1	chr3	129215386	129215586	+	1	NA	NA	NA	1554	NM_001287048	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.075000	0.621891	
mm_121545.1	chr14	122474689	122474889	+	1	NA	NA	NA	410	NR_045046	69248	Mm.235369	NR_045046	ENSMUSG00000085555	2610035F20Rik	-	RIKEN cDNA 2610035F20 gene	ncRNA	0.070000	0.631841	
mm_88917.1	chr10	81182924	81183124	+	1	NA	NA	NA	17	NM_001190474	13144	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.105000	0.616915	
mm_105196.1	chr11	102088401	102088601	-	1	NA	NA	NA	14	NM_016695	50997	Mm.36242	NM_016695	ENSMUSG00000017314	Mpp2	D11Bwg0652e|Dlg2|Dlgh2|Pals4	membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	protein-coding	0.090000	0.621891	-12(CGCTTTAAGAGC,-,0.00),-11(GCTTTAAGAGCG,+,0.00)
mm_112836.1	chr13	20826035	20826235	+	1	NA	NA	NA	32022	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.333333	-93(TCTTTTAAATAC,+,0.00)
mm_23872.1	chr3	83029067	83029267	+	1	NA	NA	NA	3014	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.015000	0.432836	
mm_138909.1	chr17	43594261	43594461	+	1	NA	NA	NA	-2852	NR_045444	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.030000	0.477612	
mm_75863.1	chr8	70760405	70760605	-	1	NA	NA	NA	416	NM_183170	234384	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0.055000	0.611940	
mm_103649.1	chr11	78971285	78971485	-	1	NA	NA	NA	13539	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.030000	0.577114	
mm_73371.1	chr8	105617713	105617913	+	1	NA	NA	NA	2347	NR_035492	100316712		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0.025000	0.537313	-35(ACATTTATAGAC,+,0.00)
mm_91768.1	chr10	51526129	51526329	-	1	NA	NA	NA	35331	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.010000	0.497512	
mm_77874.1	chr9	6168509	6168709	+	1	NA	NA	NA	-3	NM_027924	71785	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0.060000	0.582090	
mm_149620.1	chr19	16955594	16955794	+	1	NA	NA	NA	-424	NM_181348	353211	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.010000	0.636816	
mm_92856.1	chr10	81530368	81530568	-	1	NA	NA	NA	-6243	NM_010304	14676	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.010000	0.547264	
mm_58195.1	chr6	143099711	143099911	-	1	NA	NA	NA	341	NM_001286578	74741	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.135000	0.691542	
mm_89409.1	chr10	90828839	90829039	+	1	NA	NA	NA	-715	NM_001347054	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.070000	0.691542	
mm_56606.1	chr6	112387925	112388125	-	1	NA	NA	NA	-2	NM_175525	243612	Mm.122653	NM_175525	ENSMUSG00000034387	Ssu2	D630042P16Rik|Fls485|Ssuh2	ssu-2 homolog (C. elegans)	protein-coding	0.035000	0.587065	
mm_24340.1	chr3	89735697	89735897	+	1	NA	NA	NA	5079	NM_019655	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.020000	0.601990	
mm_169671.1	chr15	63334384	63334584	-	1	NA	NA	NA	145124	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA	0.010000	0.522388	
mm_74819.1	chr8	22859162	22859362	-	1	NA	NA	NA	-277	NM_001081149	244349	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0.100000	0.736318	
mm_10512.1	chr2	16356276	16356476	+	1	NA	NA	NA	72	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.070000	0.616915	
mm_98278.1	chr11	89019514	89019714	+	1	NA	NA	NA	20211	NM_009546	217069	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.020000	0.467662	
mm_6542.1	chr1	75125096	75125296	-	1	NA	NA	NA	8694	NM_194333	22626	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.065000	0.661692	
mm_696.1	chr1	40580376	40580576	+	1	NA	NA	NA	249	NM_177084	110895	Mm.108602	NM_177084	ENSMUSG00000026065	Slc9a4	AW990558|D730009J23Rik|NHE4	solute carrier family 9 (sodium/hydrogen exchanger), member 4	protein-coding	0.045000	0.527363	
mm_931.1	chr1	55450005	55450205	+	1	NA	NA	NA	44159	NM_001114663	227120	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.005000	0.462687	
mm_10074.1	chr1	195018146	195018346	-	1	NA	NA	NA	847	NR_015566	320977	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0.005000	0.467662	
mm_36825.1	chr4	105109979	105110179	-	1	NA	NA	NA	-181	NM_178143	108079	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding	0.070000	0.671642	
mm_992.1	chr1	58711406	58711606	+	1	NA	NA	NA	15	NM_001293804	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.075000	0.601990	
mm_165337.1	chr2	116989477	116989677	+	1	NA	NA	NA	89425	NR_040335	320975	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.015000	0.487562	
mm_136515.1	chr16	97450312	97450512	-	1	NA	NA	NA	12493	NM_010846	17857	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.010000	0.487562	
mm_80545.1	chr9	81632302	81632502	+	1	NA	NA	NA	44	NR_040396	319405	Mm.246494	NR_040393	ENSMUSG00000097466	D430036J16Rik	-	RIKEN cDNA D430036J16 gene	ncRNA	0.060000	0.582090	
mm_23688.1	chr3	68691334	68691534	+	1	NA	NA	NA	10	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.050000	0.542289	
mm_130602.1	chr15	99788772	99788972	-	1	NA	NA	NA	-16357	NM_028015	71949	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	0.040000	0.407960	
mm_99656.1	chr11	105655500	105655700	+	1	NA	NA	NA	65614	NM_181071	77097	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.015000	0.522388	
mm_127022.1	chr15	96286717	96286917	+	1	NA	NA	NA	-705	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.130000	0.716418	
mm_63367.1	chr7	127091244	127091444	+	1	NA	NA	NA	-92	NM_178901	101602	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	0.035000	0.606965	
mm_30840.1	chr4	24027705	24027905	+	1	NA	NA	NA	-468657	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.000000	0.373134	
mm_139947.1	chr17	71204482	71204682	+	1	NA	NA	NA	-72	NM_001164885	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.015000	0.457711	48(TTTTTTAAAGAC,+,0.00)
mm_142649.1	chr17	47509406	47509606	-	1	NA	NA	NA	4455	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.447761	
mm_94563.1	chr11	11685448	11685648	+	1	NA	NA	NA	-377	NM_009578	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.160000	0.796020	
mm_157763.1	chrX	73659970	73660170	-	1	NA	NA	NA	0	NM_001199352	93843	Mm.89564	NM_012040	ENSMUSG00000002012	Pnck	Bstk3|CaMKIbeta2|CaMKlb2|Camk1b|Punc|caMKlb1	pregnancy upregulated non-ubiquitously expressed CaM kinase	protein-coding	0.135000	0.786070	
mm_24140.1	chr3	88296887	88297087	+	1	NA	NA	NA	-148	NM_009836	12462	Mm.256034	NM_009836	ENSMUSG00000001416	Cct3	AL024092|Cctg|Tcp1-rs3|TriC-P5	chaperonin containing Tcp1, subunit 3 (gamma)	protein-coding	0.080000	0.582090	
mm_131561.1	chr16	18127528	18127728	+	1	NA	NA	NA	-78	NM_022982	65079	Mm.40149	NM_022982	ENSMUSG00000043811	Rtn4r	NOGOR|NgR|NgR1	reticulon 4 receptor	protein-coding	0.150000	0.781095	
mm_125388.1	chr15	40877384	40877584	+	1	NA	NA	NA	222442	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding	0.005000	0.378109	
mm_75128.1	chr8	34918430	34918630	-	1	NA	NA	NA	47160	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.035000	0.442786	
mm_4308.1	chr1	171840882	171841082	+	1	NA	NA	NA	1285	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.000000	0.398010	
mm_126206.1	chr15	78889666	78889866	+	1	NA	NA	NA	-2074	NR_105920	102466210		NR_105920	ENSMUSG00000099267	Mir6955	Gm27769|mmu-mir-6955	microRNA 6955	ncRNA	0.040000	0.676617	
mm_19498.1	chr2	93458722	93458922	-	1	NA	NA	NA	3029	NM_001271461	12521	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.015000	0.502488	
mm_61436.1	chr7	74411534	74411734	+	1	NA	NA	NA	143146	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.015000	0.557214	
mm_40906.1	chr5	75378859	75379059	+	1	NA	NA	NA	-196028	NM_001122733	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	KIT proto-oncogene receptor tyrosine kinase	protein-coding	0.010000	0.552239	-39(CACTATAAAAGG,-,0.00)
mm_27424.1	chr3	51518579	51518779	-	1	NA	NA	NA	34713	NM_016858	19338	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.010000	0.547264	
mm_131565.1	chr16	18213846	18214046	+	1	NA	NA	NA	-83	NR_015575	66779	Mm.387525	NR_015575		4933432I09Rik	-	RIKEN cDNA 4933432I09 gene	ncRNA	0.020000	0.597015	
mm_169146.1	chr13	62383123	62383323	-	1	NA	NA	NA	-49	NM_001162910	100041979	Mm.445930	NM_001162910	ENSMUSG00000094942	Gm3604	-	predicted gene 3604	protein-coding	0.030000	0.527363	
mm_101638.1	chr11	36432871	36433071	-	1	NA	NA	NA	-452882	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.030000	0.462687	-69(CCTTTAAAATCC,+,0.00),-59(CCTTTTATGGAG,+,0.00)
mm_6670.1	chr1	80340407	80340607	-	1	NA	NA	NA	183	NM_001313728	26554	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.195000	0.875622	
mm_62889.1	chr7	115171896	115172096	+	1	NA	NA	NA	220722	NR_040319	101786	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0.015000	0.512438	
mm_148241.1	chr18	80609617	80609817	-	1	NA	NA	NA	-65171	NR_028424	100039348	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.020000	0.522388	
mm_59300.1	chr7	25155868	25156068	+	1	NA	NA	NA	899	NR_045848	434147	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	0.030000	0.606965	
mm_13935.1	chr2	121140334	121140534	+	1	NA	NA	NA	6	NM_001290812	75894	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	0.165000	0.696517	
mm_44120.1	chr5	149441800	149442000	+	1	NA	NA	NA	2240	NM_001310765	75860	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	0.025000	0.537313	-96(GGCTTTATGAGG,-,0.00)
mm_44113.1	chr5	149427039	149427239	+	1	NA	NA	NA	-12521	NM_029464	75860	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	0.025000	0.527363	
mm_32664.1	chr4	115241944	115242144	+	1	NA	NA	NA	-40	NM_001100183	230639	Mm.466610	NM_001100183	ENSMUSG00000083138	Cyp4a29	Cyp4a29-ps|OTTMUSG00000008612	cytochrome P450, family 4, subfamily a, polypeptide 29	protein-coding	0.005000	0.467662	
mm_161294.1	chr14	26534368	26534568	-	1	NA	NA	NA	156	NM_032008	83997	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0.085000	0.731343	
mm_6984.1	chr1	86357011	86357211	-	1	NA	NA	NA	-784	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.010000	0.492537	
mm_22064.1	chr2	168670309	168670509	-	1	NA	NA	NA	-29650	NR_105971	102466784		NR_105971	ENSMUSG00000105496	Mir7004	mmu-mir-7004	microRNA 7004	ncRNA	0.045000	0.592040	
mm_16348.1	chr2	174346264	174346464	+	1	NA	NA	NA	16275	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.055000	0.487562	
mm_64593.1	chr7	3201054	3201254	-	1	NA	NA	NA	-17472	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.030000	0.477612	
mm_101265.1	chr11	21238075	21238275	-	1	NA	NA	NA	-857	NM_139061	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.000000	0.358209	
mm_142059.1	chr17	35669783	35669983	-	1	NA	NA	NA	-2291	NM_175137	68915	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	0.015000	0.542289	
mm_40539.1	chr5	57977944	57978144	+	1	NA	NA	NA	259963	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.000000	0.253731	
mm_98320.1	chr11	90249470	90249670	+	1	NA	NA	NA	94	NM_026178	67468	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.105000	0.771144	
mm_41894.1	chr5	105518893	105519093	+	1	NA	NA	NA	-478	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.030000	0.567164	
mm_40110.1	chr5	34821044	34821244	+	1	NA	NA	NA	59404	NM_010414	15194	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	0.000000	0.368159	
mm_125165.1	chr15	31268208	31268408	+	1	NA	NA	NA	43923	NM_146057	223453	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.020000	0.522388	
mm_81606.1	chr9	110661592	110661792	+	1	NA	NA	NA	5189	NM_028312	72654	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.025000	0.432836	
mm_158365.1	chrX	134964611	134964811	-	1	NA	NA	NA	43	NM_001289735	83454	Mm.103155	NM_031259	ENSMUSG00000009941	Nxf2	4930455N06Rik|Nxf-b	nuclear RNA export factor 2	protein-coding	0.065000	0.547264	
mm_128808.1	chr15	66969540	66969740	-	1	NA	NA	NA	1	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.080000	0.661692	-32(GCCTATAAAATC,-,0.00)
mm_2962.1	chr1	132880412	132880612	+	1	NA	NA	NA	157	NM_010732	16980	Mm.39640	NM_010732	ENSMUSG00000026443	Lrrn2	5730406J09Rik|NLRR-2	leucine rich repeat protein 2, neuronal	protein-coding	0.120000	0.731343	
mm_108821.1	chr12	95695420	95695620	+	1	NA	NA	NA	3294	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.130000	0.706468	
mm_144546.1	chr18	29333320	29333520	+	1	NA	NA	NA	-108780	NR_045395	78199	Mm.243850	NR_045395		4930527G23Rik	-	RIKEN cDNA 4930527G23 gene	ncRNA	0.005000	0.373134	
mm_153074.1	chr19	32259861	32260061	-	1	NA	NA	NA	-48948	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.000000	0.502488	
mm_104386.1	chr11	94474295	94474495	-	1	NA	NA	NA	-197	NM_001112813	12291	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0.100000	0.676617	
mm_101334.1	chr11	23497815	23498015	-	1	NA	NA	NA	124	NM_001290655	268390	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	0.120000	0.756219	
mm_7867.1	chr1	132634114	132634314	-	1	NA	NA	NA	8644	NM_001160316	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	0.030000	0.606965	
mm_115091.1	chr13	102706748	102706948	+	1	NA	NA	NA	13290	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.005000	0.592040	
mm_14132.1	chr2	126034874	126035074	+	1	NA	NA	NA	316	NM_008008	14178	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0.010000	0.417910	
mm_139745.1	chr17	63424597	63424797	+	1	NA	NA	NA	75883	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.000000	0.253731	
mm_105467.1	chr11	105406616	105406816	-	1	NA	NA	NA	50019	NM_172568	632687	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|OTTMUSG00000002847|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.005000	0.278607	
mm_36077.1	chr4	58206254	58206454	-	1	NA	NA	NA	242	NM_022814	64817	Mm.261024	NM_022814	ENSMUSG00000028369	Svep1	1110021D17Rik|4833413O10Rik|AA387071|D430029O09Rik|Polydom	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	protein-coding	0.080000	0.691542	
mm_145608.1	chr18	61096694	61096894	+	1	NA	NA	NA	-8778	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.045000	0.512438	
mm_125435.1	chr15	44457408	44457608	+	1	NA	NA	NA	-45	NM_138674	192190	Mm.211494	NM_138674	ENSMUSG00000038725	Pkhd1l1	AB055648|PKHDL1	polycystic kidney and hepatic disease 1-like 1	protein-coding	0.040000	0.636816	
mm_98509.1	chr11	94952198	94952398	+	1	NA	NA	NA	-15295	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.010000	0.597015	
mm_10287.1	chr2	10165587	10165787	+	1	NA	NA	NA	12144	NM_172471	209378	Mm.313876	NM_172471	ENSMUSG00000025780	Itih5	4631408O11Rik|5430408M01Rik|E130106B02	inter-alpha (globulin) inhibitor H5	protein-coding	0.000000	0.383085	
mm_159858.1	chr5	139215108	139215308	+	1	NA	NA	NA	50	NM_001256116	77053	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0.025000	0.542289	
mm_104423.1	chr11	94937883	94938083	-	1	NA	NA	NA	1759	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.035000	0.542289	
mm_158923.1	chr1	59256670	59256870	+	1	NA	NA	NA	-137	NM_001033373	271697	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	0.020000	0.522388	
mm_78148.1	chr9	21003193	21003393	+	1	NA	NA	NA	556	NM_023167	66163	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0.070000	0.616915	
mm_66870.1	chr7	57387065	57387265	-	1	NA	NA	NA	-107	NR_033504	791383	Mm.403104	NR_033504	ENSMUSG00000055048	Gm9962	ENSMUSG00000055048	predicted gene 9962	ncRNA	0.095000	0.686567	
mm_4299.1	chr1	171799521	171799721	+	1	NA	NA	NA	32489	NM_013730	27218	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	0.010000	0.482587	
mm_156133.1	chrX	123103395	123103595	+	1	NA	NA	NA	-28	NM_001310652	73061	Mm.292979	NM_028426	ENSMUSG00000079450	Cldn34c1	3110007F17Rik	claudin 34C1	protein-coding	0.090000	0.691542	
mm_75549.1	chr8	57619695	57619895	-	1	NA	NA	NA	-31958	NR_040698	100502619	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0.025000	0.343284	
mm_131302.1	chr16	11420492	11420692	+	1	NA	NA	NA	14944	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.015000	0.447761	
mm_106011.1	chr11	115843884	115844084	-	1	NA	NA	NA	19926	NM_001252532	217325	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	lethal giant larvae homolog 2 (Drosophila)	protein-coding	0.010000	0.542289	
mm_79910.1	chr9	65460889	65461089	+	1	NA	NA	NA	52	NM_138584	27965	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	spastic paraplegia 21 homolog (human)	protein-coding	0.125000	0.761194	
mm_127959.1	chr15	11906007	11906207	-	1	NA	NA	NA	-418	NR_131059	381002	Mm.441967	NR_131059		Gm5144	-	predicted gene 5144	ncRNA	0.085000	0.522388	-34(CGCTATTTAAAC,-,0.00),-32(CTATTTAAACCC,+,0.00)
mm_64793.1	chr7	6662242	6662442	-	1	NA	NA	NA	26	NR_131759	76637	Mm.159751	NR_131759	ENSMUSG00000108113	Zim2	1700116N21Rik	zinc finger, imprinted 2	ncRNA	0.020000	0.542289	
mm_42795.1	chr5	121660787	121660987	+	1	NA	NA	NA	18	NM_001289544	72399	Mm.153372	NM_028227	ENSMUSG00000029458	Brap	3010002G07Rik|BRAP2|IMP	BRCA1 associated protein	protein-coding	0.165000	0.771144	
mm_117170.1	chr13	62888038	62888238	-	1	NA	NA	NA	144	NM_019395	14121	Mm.423078	NM_019395	ENSMUSG00000069805	Fbp1	Fbp-2|Fbp2|Fbp3	fructose bisphosphatase 1	protein-coding	0.025000	0.592040	
mm_121835.1	chr14	20538079	20538279	-	1	NA	NA	NA	-8114	NR_033571	75602	Mm.437061	NR_033571	ENSMUSG00000084925	1810062O18Rik	-	RIKEN cDNA 1810062O18 gene	ncRNA	0.000000	0.298507	4(GCCTTTTAATGA,-,0.00)
mm_160972.1	chr11	100192930	100193130	-	1	NA	NA	NA	216	NM_201255	107656	Mm.445335	NM_201255	ENSMUSG00000051617	Krt9	EPPK|K9|Krt1-9	keratin 9	protein-coding	0.040000	0.577114	
mm_120606.1	chr14	70130027	70130227	+	1	NA	NA	NA	23664	NM_146055	219158	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	0.000000	0.497512	
mm_103483.1	chr11	76497683	76497883	-	1	NA	NA	NA	-3288	NM_001346670	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.005000	0.542289	
mm_117907.1	chr13	99430292	99430492	-	1	NA	NA	NA	-17566	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.030000	0.492537	
mm_152680.1	chr19	15962428	15962628	-	1	NA	NA	NA	22461	NM_198019	208518	Mm.105652	NM_198019	ENSMUSG00000041491	Cep78	5730599I05Rik|D030027P05	centrosomal protein 78	protein-coding	0.040000	0.517413	
mm_165527.1	chr2	178142111	178142311	+	1	NA	NA	NA	278	NM_028806	74189	Mm.44413	NM_028806	ENSMUSG00000027525	Phactr3	1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224	phosphatase and actin regulator 3	protein-coding	0.045000	0.527363	68(CCTTTTAAAAAA,+,0.00)
mm_137382.1	chr17	25773674	25773874	+	1	NA	NA	NA	-2	NM_026238	67563	Mm.24201	NM_026238	ENSMUSG00000002280	Narfl	9030612I22Rik|AI504405|PRN	nuclear prelamin A recognition factor-like	protein-coding	0.080000	0.562189	
mm_1638.1	chr1	74529150	74529350	+	1	NA	NA	NA	-13639	NM_001081456	18802	Mm.290731	NM_148937	ENSMUSG00000026173	Plcd4	4921507K24Rik	phospholipase C, delta 4	protein-coding	0.010000	0.398010	
mm_49106.1	chr6	8259235	8259435	+	1	NA	NA	NA	47	NM_001302353	100036521	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039|OTTMUSG00000029336	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0.105000	0.691542	
mm_45293.1	chr5	65046039	65046239	-	1	NA	NA	NA	-61429	NM_001347355	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.010000	0.472637	
mm_39593.1	chr5	23500355	23500555	+	1	NA	NA	NA	66026	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.020000	0.537313	
mm_39895.1	chr5	31196615	31196815	+	1	NA	NA	NA	3411	NM_153680	266781	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	0.005000	0.482587	-33(GACTCTATAAAC,-,0.00)
mm_33224.1	chr4	126753712	126753912	+	1	NA	NA	NA	42	NM_001035526	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.070000	0.661692	
mm_90263.1	chr10	122678560	122678760	+	1	NA	NA	NA	-102	NM_176919	319468	Mm.489703	NM_176919	ENSMUSG00000034613	Ppm1h	A430075L18Rik|ARHCL1|C030002B11Rik	protein phosphatase 1H (PP2C domain containing)	protein-coding	0.055000	0.676617	
mm_59052.1	chr7	19410994	19411194	+	1	NA	NA	NA	0	NM_007710	12715	Mm.2375	NM_007710	ENSMUSG00000030399	Ckm	Ckmm|M-CK|MCK	creatine kinase, muscle	protein-coding	0.010000	0.641791	
mm_46972.1	chr5	115194091	115194291	-	1	NA	NA	NA	190	NM_001310712	29867	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	0.155000	0.805970	-37(CCGCATTTAAGC,-,0.00),-35(GCATTTAAGCGG,+,0.00)
mm_99445.1	chr11	102433394	102433594	+	1	NA	NA	NA	3172	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.005000	0.527363	
mm_160531.1	chr9	38498351	38498551	+	1	NA	NA	NA	-220	NM_146805	258801	Mm.223228	NM_146805	ENSMUSG00000094810	Olfr907	MOR165-5	olfactory receptor 907	protein-coding	0.005000	0.348259	32(ATGTTTAAAGGG,-,0.00)
mm_90863.1	chr10	8885923	8886123	-	1	NA	NA	NA	47	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.115000	0.701493	
mm_143253.1	chr17	65509969	65510169	-	1	NA	NA	NA	30713	NM_001008973	381107	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	0.005000	0.452736	-24(CTCTCTATGAGG,-,0.00)
mm_129502.1	chr15	78877006	78877206	-	1	NA	NA	NA	-84	NM_145929	106039	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	0.045000	0.522388	-16(GTCCCTTAAAAG,-,0.00),-15(TCCCTTAAAAGG,-,0.00),-14(CCCTTAAAAGGG,+,0.00),-13(CCTTAAAAGGGC,+,0.00),52(AGCTCTTAAAGC,-,0.00),53(GCTCTTAAAGCC,+,0.00)
mm_107910.1	chr12	70989893	70990093	+	1	NA	NA	NA	15370	NM_011184	19167	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0.020000	0.398010	-67(TAATTTAAAAGG,-,0.00)
mm_171854.1	chr5	17608507	17608707	+	1	NA	NA	NA	33791	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.060000	0.651741	
mm_34784.1	chr4	154170637	154170837	+	1	NA	NA	NA	24	NM_001162977	230971	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	0.120000	0.741294	
mm_137323.1	chr17	24896519	24896719	+	1	NA	NA	NA	119	NM_019730	79059	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	0.105000	0.681592	
mm_11197.1	chr2	29125061	29125261	+	1	NA	NA	NA	169	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.125000	0.741294	
mm_50567.1	chr6	49049794	49049994	+	1	NA	NA	NA	13376	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.000000	0.412935	-96(CCATATAAATGG,-,0.00)
mm_89986.1	chr10	111993737	111993937	+	1	NA	NA	NA	3427	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.010000	0.422886	
mm_58750.1	chr7	13309493	13309693	+	1	NA	NA	NA	-16074	NM_001168504	232889	Mm.223639	NM_001004762	ENSMUSG00000033847	Pla2g4c	D7Ertd445e	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding	0.010000	0.407960	
mm_1346.1	chr1	66302000	66302200	+	1	NA	NA	NA	-19624	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.005000	0.348259	
mm_137339.1	chr17	25135849	25136049	+	1	NA	NA	NA	-682	NM_001317404	26373	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.025000	0.492537	
mm_48526.1	chr5	142903507	142903707	-	1	NA	NA	NA	3147	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.015000	0.298507	-7(GGATTTAAAAAC,-,0.00)
mm_21700.1	chr2	164549245	164549445	-	1	NA	NA	NA	-13371	NM_026323	67701	Mm.27289	NM_026323	ENSMUSG00000017723	Wfdc2	1600023A02Rik|HE4|WAP5	WAP four-disulfide core domain 2	protein-coding	0.015000	0.422886	
mm_139569.1	chr17	57011677	57011877	+	1	NA	NA	NA	-489	NM_133801	98053	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0.065000	0.646766	
mm_65704.1	chr7	28377832	28378032	-	1	NA	NA	NA	1296	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.035000	0.636816	-5(GCTTTTCTGGCC,+,0.00)
mm_39162.1	chr4	155624203	155624403	-	1	NA	NA	NA	452	NR_040441	100502734	Mm.306018	NR_040441	ENSMUSG00000086682	Gm16023	OTTMUSG00000029160	predicted gene 16023	ncRNA	0.010000	0.432836	
mm_90893.1	chr10	10339629	10339829	-	1	NA	NA	NA	132585	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.030000	0.363184	
mm_153218.1	chr19	34747361	34747561	-	1	NA	NA	NA	-350	NM_172838	240638	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0.035000	0.557214	
mm_40471.1	chr5	53998308	53998508	+	1	NA	NA	NA	-115	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.135000	0.761194	
mm_99221.1	chr11	101033833	101034033	+	1	NA	NA	NA	3593	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.040000	0.532338	
mm_104284.1	chr11	90002761	90002961	-	1	NA	NA	NA	33	NM_008796	18559	Mm.5062	NM_008796	ENSMUSG00000020553	Pctp	PC-TP|StarD2	phosphatidylcholine transfer protein	protein-coding	0.075000	0.656716	
mm_89285.1	chr10	87880720	87880920	+	1	NA	NA	NA	19709	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.005000	0.398010	
mm_86846.1	chr10	21592043	21592243	+	1	NA	NA	NA	-1002	NR_027968	67692	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.015000	0.512438	-27(GGGTTTAAAAAG,-,0.00),-25(GTTTAAAAAGTC,+,0.00)
mm_30279.1	chr3	148860905	148861105	-	1	NA	NA	NA	93630	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.000000	0.283582	
mm_118028.1	chr13	101538158	101538358	-	1	NA	NA	NA	-140678	NR_046187	78136	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	0.005000	0.477612	
mm_39956.1	chr5	32135748	32135948	+	1	NA	NA	NA	-624	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.070000	0.582090	
mm_25684.1	chr3	122245413	122245613	+	1	NA	NA	NA	-44	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.195000	0.845771	
mm_163427.1	chr12	82251485	82251685	+	1	NA	NA	NA	-59764	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.000000	0.452736	
mm_162838.1	chr10	84556124	84556324	-	1	NA	NA	NA	-2886	NR_040658	442847	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	0.000000	0.427861	
mm_132509.1	chr16	36962598	36962798	+	1	NA	NA	NA	16438	NM_001037321	207215	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0.030000	0.522388	
mm_4471.1	chr1	173419219	173419419	+	1	NA	NA	NA	-1285	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.000000	0.437811	
mm_52366.1	chr6	112963277	112963477	+	1	NA	NA	NA	-16111	NM_080448	259302	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	0.020000	0.621891	
mm_140720.1	chr17	15432115	15432315	-	1	NA	NA	NA	35969	NM_024203	67544	Mm.35039	NM_024203	ENSMUSG00000014763	Fam120b	4932442K08Rik|AW049283|AW413338|CCPG|Pgcc1|mKIAA1838	family with sequence similarity 120, member B	protein-coding	0.015000	0.537313	
mm_126696.1	chr15	85037070	85037270	+	1	NA	NA	NA	108	NM_133750	73225	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0.150000	0.771144	
mm_84489.1	chr9	66846188	66846388	-	1	NA	NA	NA	-11582	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.005000	0.442786	
mm_41849.1	chr5	104439174	104439374	+	1	NA	NA	NA	3082	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.040000	0.417910	
mm_151132.1	chr19	48332080	48332280	+	1	NA	NA	NA	126155	NM_025696	66673	Mm.70980	NM_025696	ENSMUSG00000063434	Sorcs3	6330404A12Rik|AW045579	sortilin-related VPS10 domain containing receptor 3	protein-coding	0.025000	0.457711	
mm_151231.1	chr19	53748927	53749127	+	1	NA	NA	NA	71721	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.005000	0.417910	
mm_28845.1	chr3	96708439	96708639	-	1	NA	NA	NA	21	NM_001162925	78373	Mm.423186	NM_030094	ENSMUSG00000028100	Nudt17	2410015C20Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 17	protein-coding	0.100000	0.711443	
mm_3718.1	chr1	154077925	154078125	+	1	NA	NA	NA	-123162	NM_001204908	100503355	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	ENSMUSG00000066797|Gm10178|Gm203	zinc finger protein 648	protein-coding	0.035000	0.497512	
mm_158073.1	chrX	101264669	101264869	-	1	NA	NA	NA	-777	NM_001317221	245536	Mm.212463	NM_001033362	ENSMUSG00000090141	Gm614	-	predicted gene 614	protein-coding	0.015000	0.492537	
mm_33738.1	chr4	134121727	134121927	+	1	NA	NA	NA	6926	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.005000	0.532338	
mm_46414.1	chr5	104094579	104094779	-	1	NA	NA	NA	-17071	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.025000	0.437811	
mm_92944.1	chr10	85102330	85102530	-	1	NA	NA	NA	65	NM_010214	14202	Mm.46163	NM_010214	ENSMUSG00000050035	Fhl4	-	four and a half LIM domains 4	protein-coding	0.080000	0.661692	
mm_14160.1	chr2	126602407	126602607	+	1	NA	NA	NA	16171	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.030000	0.477612	
mm_12091.1	chr2	60335344	60335544	+	1	NA	NA	NA	47787	NM_013825	17076	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	0.020000	0.442786	
mm_97778.1	chr11	82180034	82180234	+	1	NA	NA	NA	-322	NM_011329	20290	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|Scya1|Tca-3	chemokine (C-C motif) ligand 1	protein-coding	0.015000	0.487562	
mm_161821.1	chr17	71311377	71311577	-	1	NA	NA	NA	-512	NM_145158	246707	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.055000	0.542289	-75(CCTCATAAACAC,+,0.00)
mm_77796.1	chr9	3030066	3030266	+	1	NA	NA	NA	8577	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.020000	0.328358	
mm_111090.1	chr12	80436454	80436654	-	1	NA	NA	NA	47	NM_177267	320808	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	0.130000	0.741294	
mm_22295.1	chr2	180273294	180273494	-	1	NA	NA	NA	71	NM_145851	252966	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0.175000	0.810945	
mm_99820.1	chr11	108682527	108682727	+	1	NA	NA	NA	9	NM_029586	76380	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0.015000	0.512438	
mm_121499.1	chr14	121879822	121880022	+	1	NA	NA	NA	-514	NR_130999	78312	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0.015000	0.407960	
mm_28484.1	chr3	92457195	92457395	-	1	NA	NA	NA	1425	NM_001204427	20766	Mm.57092	NM_011478	ENSMUSG00000045539	Sprr3	SPR3	small proline-rich protein 3	protein-coding	0.005000	0.477612	
mm_21422.1	chr2	158146265	158146465	-	1	NA	NA	NA	27	NM_009373	21817	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.130000	0.761194	
mm_35319.1	chr4	25799994	25800194	-	1	NA	NA	NA	-91	NM_010243	14348	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.050000	0.616915	
mm_134328.1	chr16	16358928	16359128	-	1	NA	NA	NA	3	NM_152816	74006	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	0.080000	0.656716	
mm_126630.1	chr15	83474571	83474771	+	1	NA	NA	NA	-10065	NM_001159509	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.025000	0.557214	-33(GGTTTTATAAGC,-,0.00)
mm_44782.1	chr5	32133026	32133226	-	1	NA	NA	NA	-3346	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.090000	0.686567	
mm_10570.1	chr2	18064282	18064482	+	1	NA	NA	NA	-203	NM_001252560	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.160000	0.805970	
mm_169332.1	chr14	118925263	118925463	-	1	NA	NA	NA	107	NM_025943	66573	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	0.065000	0.666667	
mm_29271.1	chr3	107517248	107517448	-	1	NA	NA	NA	670	NM_001293689	229706	Mm.212867	NM_172271	ENSMUSG00000027894	Slc6a17	D130012J15Rik|Ntt4	solute carrier family 6 (neurotransmitter transporter), member 17	protein-coding	0.075000	0.646766	
mm_3158.1	chr1	135155374	135155574	+	1	NA	NA	NA	8640	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.005000	0.567164	
mm_27787.1	chr3	75164961	75165161	-	1	NA	NA	NA	-21289	NM_172515	213234	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding	0.045000	0.572139	
mm_88845.1	chr10	80929723	80929923	+	1	NA	NA	NA	-268	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.080000	0.557214	29(GCTTTTCTAGCT,+,0.00)
mm_132116.1	chr16	31664054	31664254	+	1	NA	NA	NA	219	NM_001252434	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.140000	0.786070	
mm_108662.1	chr12	86466492	86466692	+	1	NA	NA	NA	44948	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.010000	0.537313	
mm_30755.1	chr4	15265675	15265875	+	1	NA	NA	NA	-45	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.145000	0.776119	
mm_105334.1	chr11	102946646	102946846	-	1	NA	NA	NA	-285	NM_011795	23829	Mm.57154	NM_011795	ENSMUSG00000045532	C1ql1	C1qrf|CRF|CTRP14|gliacolin	complement component 1, q subcomponent-like 1	protein-coding	0.115000	0.781095	
mm_62484.1	chr7	101882650	101882850	+	1	NA	NA	NA	1425	NM_001291353	75430	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.005000	0.467662	
mm_701.1	chr1	40606225	40606425	+	1	NA	NA	NA	26098	NM_177084	110895	Mm.108602	NM_177084	ENSMUSG00000026065	Slc9a4	AW990558|D730009J23Rik|NHE4	solute carrier family 9 (sodium/hydrogen exchanger), member 4	protein-coding	0.000000	0.348259	-8(TGGTTTTAAAAG,-,0.00),-7(GGTTTTAAAAGG,-,0.00),-6(GTTTTAAAAGGT,+,0.00),70(TACTTTAAAAAC,-,0.00),72(CTTTAAAAACAC,+,0.00)
mm_22965.1	chr3	32529504	32529704	+	1	NA	NA	NA	122	NM_024200	67414	Mm.290414	NM_024200	ENSMUSG00000027668	Mfn1	2310002F04Rik|6330416C07Rik|D3Ertd265e|HR2|mKIAA4032	mitofusin 1	protein-coding	0.110000	0.746269	
mm_4154.1	chr1	171019876	171020076	+	1	NA	NA	NA	1050	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.015000	0.512438	
mm_56328.1	chr6	92534773	92534973	-	1	NA	NA	NA	-12	NM_001134459	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.015000	0.567164	-32(GTCCCTTTAAGC,-,0.00),-30(CCCTTTAAGCTG,+,0.00)
mm_71246.1	chr8	40913943	40914143	+	1	NA	NA	NA	-12190	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.025000	0.507463	
mm_76540.1	chr8	87960578	87960778	-	1	NA	NA	NA	-1083	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	0.115000	0.721393	
mm_15975.1	chr2	166194156	166194356	+	1	NA	NA	NA	-38573	NM_028072	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.040000	0.512438	
mm_90119.1	chr10	117278052	117278252	+	1	NA	NA	NA	4120	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.035000	0.492537	
mm_86313.1	chr9	122859298	122859498	-	1	NA	NA	NA	6608	NM_173364	235682	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	0.005000	0.358209	
mm_140552.1	chr17	7397204	7397404	-	1	NA	NA	NA	-11999	NM_001142539	667055	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	ENSMUSG00000056133	predicted gene 9992	protein-coding	0.020000	0.517413	
mm_164127.1	chr15	39910630	39910830	-	1	NA	NA	NA	33027	NM_172814	239393	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0.005000	0.328358	
mm_79363.1	chr9	54469541	54469741	+	1	NA	NA	NA	31985	NM_172771	235380	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.010000	0.467662	
mm_66579.1	chr7	45336455	45336655	-	1	NA	NA	NA	1286	NM_010473	15464	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.005000	0.492537	
mm_19309.1	chr2	90528797	90528997	-	1	NA	NA	NA	-49723	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.005000	0.412935	
mm_19345.1	chr2	90904588	90904788	-	1	NA	NA	NA	33	NM_026688	68349	Mm.30113	NM_026688	ENSMUSG00000005510	Ndufs3	0610010M09Rik|CI-30kD	NADH dehydrogenase (ubiquinone) Fe-S protein 3	protein-coding	0.085000	0.656716	
mm_38299.1	chr4	136896099	136896299	-	1	NA	NA	NA	2645	NM_007572	12259	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	0.055000	0.606965	
mm_104306.1	chr11	90673602	90673802	-	1	NA	NA	NA	13899	NM_028011	71943	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	0.010000	0.487562	
mm_11820.1	chr2	44310512	44310712	+	1	NA	NA	NA	-245288	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.005000	0.333333	
mm_100521.1	chr11	120573345	120573545	+	1	NA	NA	NA	-509	NM_011032	18453	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.100000	0.646766	
mm_92089.1	chr10	62839793	62839993	-	1	NA	NA	NA	40121	NM_027384	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.015000	0.517413	
mm_100926.1	chr11	6472136	6472336	-	1	NA	NA	NA	3840	NM_011221	19291	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0.000000	0.348259	6(CCATATATGGCA,+,0.00)
mm_153814.1	chr19	46045438	46045638	-	1	NA	NA	NA	-327	NM_001113408	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.095000	0.736318	
mm_129283.1	chr15	77153834	77154034	-	1	NA	NA	NA	-122	NM_001286418	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.030000	0.606965	
mm_61447.1	chr7	75585606	75585806	+	1	NA	NA	NA	130172	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.010000	0.333333	-34(TTCTTTAAAAAG,-,0.00)
mm_6128.1	chr1	64532307	64532507	-	1	NA	NA	NA	-397	NM_133828	12912	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.110000	0.686567	
mm_70000.1	chr7	142386737	142386937	-	1	NA	NA	NA	1033	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.000000	0.577114	
mm_133147.1	chr16	70313914	70314114	+	1	NA	NA	NA	65	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.110000	0.756219	17(CGCTATAAAGGG,-,0.00)
mm_41231.1	chr5	88720961	88721161	+	1	NA	NA	NA	190	NM_026735	68473	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	0.140000	0.706468	
mm_50195.1	chr6	41852769	41852969	+	1	NA	NA	NA	5320	NM_008843	18716	Mm.214755	NM_008843	ENSMUSG00000058499	Pip	GCDFP-15|GP17|mSMGP	prolactin induced protein	protein-coding	0.015000	0.417910	
mm_98311.1	chr11	90034685	90034885	+	1	NA	NA	NA	4437	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.025000	0.517413	1(CCATTTATGCAC,+,0.00)
mm_46006.1	chr5	90700108	90700308	-	1	NA	NA	NA	-59090	NM_009141	20311	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0.015000	0.402985	
mm_81321.1	chr9	108479847	108480047	+	1	NA	NA	NA	85	NM_008483	16779	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	0.025000	0.532338	
mm_103773.1	chr11	82179807	82180007	-	1	NA	NA	NA	-95	NM_011329	20290	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|Scya1|Tca-3	chemokine (C-C motif) ligand 1	protein-coding	0.015000	0.552239	
mm_172277.1	chr6	86525104	86525304	+	1	NA	NA	NA	961	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.055000	0.587065	
mm_128968.1	chr15	74832081	74832281	-	1	NA	NA	NA	9462	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.010000	0.487562	
mm_74269.1	chr8	124949464	124949664	+	1	NA	NA	NA	-310	NM_053207	112405	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	0.135000	0.781095	
mm_5759.1	chr1	46888047	46888247	-	1	NA	NA	NA	-34638	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.010000	0.437811	-34(CTCCTTTAAAGA,-,0.00),-33(TCCTTTAAAGAC,+,0.00)
mm_29825.1	chr3	129678340	129678540	-	1	NA	NA	NA	46646	NM_001310737	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.020000	0.562189	
mm_59795.1	chr7	29001424	29001624	+	1	NA	NA	NA	18670	NM_008279	26411	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.045000	0.601990	
mm_97372.1	chr11	77686070	77686270	+	1	NA	NA	NA	31	NM_001024205	68564	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0.075000	0.626866	
mm_157733.1	chrX	71215439	71215639	-	1	NA	NA	NA	457	NM_019926	17772	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	0.055000	0.606965	
mm_142121.1	chr17	35895896	35896096	-	1	NA	NA	NA	1382	NM_001033630	69662	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	0.020000	0.567164	
mm_77036.1	chr8	109565642	109565842	-	1	NA	NA	NA	-141	NM_178380	64340	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|Prp16|mKIAA0224	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	0.070000	0.606965	
mm_122605.1	chr14	51055589	51055789	-	1	NA	NA	NA	1553	NM_001011875	497106	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	0.000000	0.358209	77(CTCTATTAAAGA,-,0.00)
mm_144548.1	chr18	30272780	30272980	+	1	NA	NA	NA	-16	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding	0.075000	0.601990	
mm_51358.1	chr6	72616787	72616987	+	1	NA	NA	NA	113	NM_009443	22134	Mm.246563	NM_009443	ENSMUSG00000056429	Tgoln1	AU015504|D6Ertd384e|TGN38|TGN38A|Ttgn1	trans-golgi network protein	protein-coding	0.075000	0.621891	
mm_40790.1	chr5	67450529	67450729	+	1	NA	NA	NA	-13269	NR_110363	320479	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	0.035000	0.457711	
mm_63224.1	chr7	126367805	126368005	+	1	NA	NA	NA	140	NR_106025	102466797		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.010000	0.562189	
mm_141952.1	chr17	35111960	35112160	-	1	NA	NA	NA	3340	NM_148939	266614	Mm.104680	NM_148939	ENSMUSG00000043807	Ly6g5b	-	lymphocyte antigen 6 complex, locus G5B	protein-coding	0.020000	0.527363	
mm_49231.1	chr6	17105253	17105453	+	1	NA	NA	NA	40204	NM_207176	21753	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	0.030000	0.537313	
mm_129230.1	chr15	76614948	76615148	-	1	NA	NA	NA	1804	NM_028064	72027	Mm.276829	NM_028064	ENSMUSG00000063354	Slc39a4	1600025H15Rik|AU041686|AWMS2|ZIP4	solute carrier family 39 (zinc transporter), member 4	protein-coding	0.025000	0.527363	
mm_50277.1	chr6	46563206	46563406	+	1	NA	NA	NA	-681090	NM_025771	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.005000	0.348259	
mm_123424.1	chr14	64419429	64419629	-	1	NA	NA	NA	-2250	NM_001347639	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.010000	0.437811	
mm_66215.1	chr7	34389367	34389567	-	1	NA	NA	NA	73	NM_025948	67070	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral	LSM14A mRNA processing body assembly factor	protein-coding	0.135000	0.706468	
mm_129619.1	chr15	80014875	80015075	-	1	NA	NA	NA	-167	NM_011057	18591	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.045000	0.631841	-36(TCCTTTATAAAG,-,0.00),-34(CTTTATAAAGGC,+,0.00)
mm_38754.1	chr4	147809712	147809912	-	1	NA	NA	NA	-24	NM_001127189	100041677	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157|OTTMUSG00000010679	zinc finger protein 984	protein-coding	0.035000	0.502488	
mm_101600.1	chr11	34770605	34770805	-	1	NA	NA	NA	13200	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.000000	0.477612	
mm_66891.1	chr7	59284835	59285035	-	1	NA	NA	NA	39214	NR_015479	330544	Mm.9002	NR_015479	ENSMUSG00000100826	C230091D08Rik	-	RIKEN cDNA C230091D08 gene	ncRNA	0.000000	0.313433	63(TACTTTAAAAGA,-,0.00),64(ACTTTAAAAGAC,+,0.00)
mm_131943.1	chr16	24096259	24096459	+	1	NA	NA	NA	-107747	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.000000	0.437811	
mm_157480.1	chrX	48172922	48173122	-	1	NA	NA	NA	26586	NM_028773	74131	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	0.005000	0.512438	
mm_27879.1	chr3	79173043	79173243	-	1	NA	NA	NA	-27268	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.040000	0.427861	
mm_159876.1	chr5	150764700	150764900	+	1	NA	NA	NA	90973	NM_001346503	100710	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	0.010000	0.333333	
mm_38520.1	chr4	141422531	141422731	-	1	NA	NA	NA	1852	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.025000	0.592040	
mm_127865.1	chr15	8361660	8361860	-	1	NA	NA	NA	82703	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.020000	0.457711	
mm_172857.1	chr9	40488100	40488300	+	1	NA	NA	NA	-32436	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.015000	0.432836	
mm_66839.1	chr7	48881512	48881712	-	1	NA	NA	NA	-571	NM_001013368	108961	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.145000	0.815920	
mm_19101.1	chr2	79454212	79454412	-	1	NA	NA	NA	2324	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.065000	0.656716	
mm_127909.1	chr15	9529603	9529803	-	1	NA	NA	NA	173	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.005000	0.402985	61(CTTTTTTAAAGG,-,0.00),62(TTTTTTAAAGGA,+,0.00)
mm_69487.1	chr7	133958702	133958902	-	1	NA	NA	NA	-176017	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.000000	0.467662	
mm_138491.1	chr17	35200299	35200499	+	1	NA	NA	NA	1608	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.035000	0.567164	
mm_93697.1	chr10	117910414	117910614	-	1	NA	NA	NA	-14945	NR_045342	71067	Mm.410793	NR_045342		4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0.020000	0.452736	
mm_156928.1	chrX	169320301	169320501	+	1	NA	NA	NA	-29	NM_001331049	15159	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	0.140000	0.686567	
mm_22060.1	chr2	168601529	168601729	-	1	NA	NA	NA	28	NM_001291171	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.095000	0.736318	
mm_12827.1	chr2	80617138	80617338	+	1	NA	NA	NA	24	NM_024438	68082	Mm.306818	NM_024438	ENSMUSG00000027001	Dusp19	5930436K22Rik|C79103|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding	0.035000	0.532338	
mm_172969.1	chr9	90114450	90114650	-	1	NA	NA	NA	270	NM_001039147	21761	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.055000	0.621891	
mm_80826.1	chr9	96799691	96799891	+	1	NA	NA	NA	34229	NR_102296	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	0.005000	0.532338	-35(CACTATAAAGGG,-,0.00)
mm_82467.1	chr9	16033954	16034154	-	1	NA	NA	NA	-159498	NM_145712	244701	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0.005000	0.442786	
mm_151120.1	chr19	47865423	47865623	+	1	NA	NA	NA	-22	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.075000	0.661692	
mm_146610.1	chr18	10016784	10016984	-	1	NA	NA	NA	13265	NM_021522	59025	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0.000000	0.293532	
mm_157387.1	chrX	38252317	38252517	-	1	NA	NA	NA	64	NM_001289727	245386	Mm.72979	NM_172930	ENSMUSG00000036502	Tmem255a	4933417N17|6430550H21Rik|Fam70a	transmembrane protein 255A	protein-coding	0.045000	0.671642	
mm_11881.1	chr2	49562415	49562615	+	1	NA	NA	NA	-56799	NM_008449	16574	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding	0.005000	0.422886	
mm_147181.1	chr18	36772234	36772434	-	1	NA	NA	NA	-6120	NM_173383	213236	Mm.234464	NM_173383	ENSMUSG00000044595	Dnd1	BC034897|RBMS4|Ter	DND microRNA-mediated repression inhibitor 1	protein-coding	0.045000	0.467662	
mm_109699.1	chr12	113156323	113156523	+	1	NA	NA	NA	2	NM_134041	104732	Mm.87616	NM_134041	ENSMUSG00000037466	4930427A07Rik	AA536649|mFLJ00116	RIKEN cDNA 4930427A07 gene	protein-coding	0.090000	0.686567	
mm_170254.1	chr18	10274610	10274810	-	1	NA	NA	NA	-50469	NM_001083628	381157	Mm.261535	NM_001083628	ENSMUSG00000042942	Greb1l	mKIAA4095	growth regulation by estrogen in breast cancer-like	protein-coding	0.020000	0.407960	
mm_46761.1	chr5	112251114	112251314	-	1	NA	NA	NA	1304	NM_001312884	12959	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0.010000	0.542289	
mm_73272.1	chr8	104591347	104591547	+	1	NA	NA	NA	-21	NM_001024606	382051	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0.040000	0.567164	
mm_166411.1	chr5	137151332	137151532	-	1	NA	NA	NA	-35225	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.010000	0.482587	
mm_151879.1	chr19	5798390	5798590	-	1	NA	NA	NA	-2509	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.000000	0.283582	
mm_161962.1	chr19	8131848	8132048	-	1	NA	NA	NA	34	NM_001013820	434674	Mm.24053	NM_001013820	ENSMUSG00000063590	Slc22a28	EG434674|Gm5631	solute carrier family 22, member 28	protein-coding	0.005000	0.358209	-99(TTCCATTAAAAG,-,0.00),-97(CCATTAAAAGTA,+,0.00),-34(AACTTTAAAAGA,-,0.00)
mm_109806.1	chr12	3341260	3341460	-	1	NA	NA	NA	-23772	NM_008445	16570	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.000000	0.373134	
mm_96315.1	chr11	63965976	63966176	+	1	NA	NA	NA	1850	NR_131111	78883	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	0.010000	0.601990	
mm_142779.1	chr17	50101258	50101458	-	1	NA	NA	NA	89139	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.000000	0.348259	54(ATCTTTAAAAGA,-,0.00),55(TCTTTAAAAGAT,+,0.00)
mm_71002.1	chr8	31091514	31091714	+	1	NA	NA	NA	1952	NM_025869	66959	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0.010000	0.587065	
mm_87199.1	chr10	39550891	39551091	+	1	NA	NA	NA	-61943	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.000000	0.497512	
mm_20053.1	chr2	120288969	120289169	-	1	NA	NA	NA	0	NM_001024137	78390	Mm.330507	NM_001024137	ENSMUSG00000070719	Pla2g4d	2610311B01Rik|Pla2delta|cPLA2delta	phospholipase A2, group IVD	protein-coding	0.015000	0.512438	
mm_140735.1	chr17	15704701	15704901	-	1	NA	NA	NA	-166	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.135000	0.761194	
mm_100427.1	chr11	119453993	119454193	+	1	NA	NA	NA	-37254	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.010000	0.477612	
mm_56322.1	chr6	92449954	92450154	-	1	NA	NA	NA	31338	NM_001134460	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.000000	0.462687	-69(GGGCTTAAAAGA,-,0.00)
mm_19954.1	chr2	117338461	117338661	-	1	NA	NA	NA	4316	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.005000	0.542289	
mm_115518.1	chr13	5845676	5845876	-	1	NA	NA	NA	12316	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.005000	0.422886	
mm_87065.1	chr10	29030649	29030849	+	1	NA	NA	NA	-44443	NM_026336	67719	Mm.440480	NM_026336	ENSMUSG00000015519	2310057J18Rik	2210414P04Rik|Leg1	RIKEN cDNA 2310057J18 gene	protein-coding	0.020000	0.552239	
mm_112655.1	chr13	16026438	16026638	+	1	NA	NA	NA	14687	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.020000	0.542289	-99(GGGCTTAAAGGG,-,0.00),-97(GCTTAAAGGGGG,+,0.00)
mm_74340.1	chr8	127171299	127171499	+	1	NA	NA	NA	107343	NM_001309391	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.010000	0.522388	
mm_2134.1	chr1	88070657	88070857	+	1	NA	NA	NA	-22	NM_201644	394434	Mm.300095	NM_201644	ENSMUSG00000090175	Ugt1a9	UDPGT|UDPGT 1-9|UGT1-09|UGT1.9|UGTP4|Ugt1a12|mUGTBr/P	UDP glucuronosyltransferase 1 family, polypeptide A9	protein-coding	0.005000	0.398010	
mm_58400.1	chr7	3218073	3218273	+	1	NA	NA	NA	-453	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.035000	0.517413	-43(CTTTTTAAAAAC,+,0.00),-22(TTTTTTAAAAGG,-,0.00),-21(TTTTTAAAAGGC,+,0.00)
mm_58938.1	chr7	18067141	18067341	+	1	NA	NA	NA	1312	NM_001162523	67315	Mm.46089	NM_026087	ENSMUSG00000030366	Ceacam12	1600031J20Rik|Ceacam12-C1|Ceacam12-C3|Ceacam12C1|Ceacam12C3	carcinoembryonic antigen-related cell adhesion molecule 12	protein-coding	0.000000	0.417910	
mm_112520.1	chr13	9149142	9149342	+	1	NA	NA	NA	55361	NM_172585	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.000000	0.313433	-48(CTTTATATAGCT,+,0.00),60(CCTTTTAAATTA,+,0.00)
mm_74355.1	chr8	128166352	128166552	+	1	NA	NA	NA	111773	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.005000	0.422886	
mm_46614.1	chr5	108066118	108066318	-	1	NA	NA	NA	544	NM_013827	17765	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0.040000	0.577114	
mm_17581.1	chr2	30415383	30415583	-	1	NA	NA	NA	265	NM_007760	12908	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.105000	0.721393	
mm_117153.1	chr13	61358096	61358296	-	1	NA	NA	NA	-26	NM_019539	56092	Mm.3692	NM_019539	ENSMUSG00000021440	Cts7	AA408230|AA408952|CTS1|Epcs24|Epcs71	cathepsin 7	protein-coding	0.000000	0.492537	
mm_87419.1	chr10	50662458	50662658	+	1	NA	NA	NA	69889	NM_198007	77987	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.005000	0.338308	
mm_160228.1	chr7	102194733	102194933	-	1	NA	NA	NA	15034	NM_001287167	269966	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	0.000000	0.402985	
mm_173179.1	chrX	53723565	53723765	+	1	NA	NA	NA	-1166	NM_029142	75013	Mm.336332	NM_029142	ENSMUSG00000055555	4930502E18Rik	Ct55	RIKEN cDNA 4930502E18 gene	protein-coding	0.010000	0.492537	
mm_66860.1	chr7	55962343	55962543	-	1	NA	NA	NA	50	NM_001256133	93790	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	0.110000	0.706468	
mm_169890.1	chr16	4697739	4697939	-	1	NA	NA	NA	13769	NM_001135112	83945	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	0.010000	0.472637	
mm_39523.1	chr5	21258132	21258332	+	1	NA	NA	NA	71965	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.005000	0.373134	
mm_90614.1	chr10	128376390	128376590	+	1	NA	NA	NA	-634	NM_172790	237615	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	0.015000	0.517413	
mm_48906.1	chr6	3574176	3574376	+	1	NA	NA	NA	75883	NM_001167750	73288	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	0.015000	0.383085	
mm_74946.1	chr8	25847611	25847811	-	1	NA	NA	NA	-17	NM_001080793	23808	Mm.27706	NM_011791	ENSMUSG00000031575	Ash2l	-	ash2 (absent, small, or homeotic)-like (Drosophila)	protein-coding	0.025000	0.497512	
mm_136407.1	chr16	93721802	93722002	-	1	NA	NA	NA	9995	NM_027293	70028	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0.025000	0.547264	
mm_105848.1	chr11	113709572	113709772	-	1	NA	NA	NA	-146	NM_001164532	52670	Mm.229207	NM_026682	ENSMUSG00000018727	Cpsf4l	0610010C04Rik|1500000C01Rik|D11Ertd636e	cleavage and polyadenylation specific factor 4-like	protein-coding	0.015000	0.616915	
mm_2029.1	chr1	87186569	87186769	+	1	NA	NA	NA	3355	NM_027084	69453	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	0.095000	0.641791	
mm_10433.1	chr2	14074127	14074327	+	1	NA	NA	NA	115	NM_011484	20844	Mm.273174	NM_011484	ENSMUSG00000026718	Stam	STAM1	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	protein-coding	0.060000	0.681592	
mm_93990.1	chr10	127522294	127522494	-	1	NA	NA	NA	50	NM_001252316	108037	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0.070000	0.517413	
mm_73610.1	chr8	110089903	110090103	+	1	NA	NA	NA	10269	NM_175480	234725	Mm.87487	NM_175480	ENSMUSG00000044676	Zfp612	B230354B21Rik	zinc finger protein 612	protein-coding	0.015000	0.472637	
mm_20297.1	chr2	126941891	126942091	-	1	NA	NA	NA	-8756	NM_023220	66552	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	0.025000	0.482587	-33(TTCTATAAAAAC,-,0.00)
mm_94810.1	chr11	23020375	23020575	+	1	NA	NA	NA	7088	NM_028672	73873	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0.050000	0.562189	-29(CCCTTTATGAGG,+,0.00),-29(CCCTTTATGAGG,-,0.00)
mm_96157.1	chr11	61485932	61486132	+	1	NA	NA	NA	588	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.025000	0.537313	
mm_22757.1	chr3	19988962	19989162	+	1	NA	NA	NA	32008	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.005000	0.353234	
mm_28351.1	chr3	89667155	89667355	-	1	NA	NA	NA	-47767	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.035000	0.636816	
mm_149860.1	chr19	25097784	25097984	+	1	NA	NA	NA	98355	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.005000	0.422886	47(CTTTTTATACCA,+,0.00)
mm_85914.1	chr9	111057398	111057598	-	1	NA	NA	NA	20	NM_001302376	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.030000	0.552239	
mm_69405.1	chr7	132317210	132317410	-	1	NA	NA	NA	-155	NM_029935	77590	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.070000	0.597015	
mm_96970.1	chr11	70647840	70648040	+	1	NA	NA	NA	653	NM_027445	70510	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0.065000	0.616915	
mm_36722.1	chr4	98733428	98733628	-	1	NA	NA	NA	6774	NM_001081202	381591	Mm.34340	NM_001081202	ENSMUSG00000087166	L1td1	AA546746|AB211064|D76865|ECAT11	LINE-1 type transposase domain containing 1	protein-coding	0.015000	0.487562	
mm_6777.1	chr1	84136703	84136903	-	1	NA	NA	NA	82158	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.333333	
mm_138468.1	chr17	35186854	35187054	+	1	NA	NA	NA	1486	NM_010734	16988	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	0.010000	0.537313	-74(CCTTTTCTAGCA,+,0.00)
mm_110181.1	chr12	27337481	27337681	-	1	NA	NA	NA	5137	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.005000	0.358209	
mm_23453.1	chr3	60081769	60081969	+	1	NA	NA	NA	0	NM_032400	84112	Mm.125110	NM_032400	ENSMUSG00000027762	Sucnr1	Gpr91	succinate receptor 1	protein-coding	0.015000	0.467662	
mm_171244.1	chr3	75650479	75650679	-	1	NA	NA	NA	5152	NR_040539	69193	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	0.005000	0.532338	83(TCCTTTATAAAG,-,0.00),85(CTTTATAAAGTG,+,0.00)
mm_87292.1	chr10	42502031	42502231	+	1	NA	NA	NA	77	NM_017472	54198	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.140000	0.741294	
mm_80397.1	chr9	76312413	76312613	+	1	NA	NA	NA	11065	NM_198962	387285	Mm.335300	NM_198962	ENSMUSG00000032360	Hcrtr2	OX2R|mOX2aR|mOX2bR|mOXR2	hypocretin (orexin) receptor 2	protein-coding	0.005000	0.472637	81(TTCTTTATAAGA,-,0.00)
mm_48421.1	chr5	140389072	140389272	-	1	NA	NA	NA	136	NM_172277	231834	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.105000	0.706468	
mm_153405.1	chr19	40513653	40513853	-	1	NA	NA	NA	-17	NM_178362	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.115000	0.701493	
mm_31754.1	chr4	63350271	63350471	+	1	NA	NA	NA	-5791	NM_013623	18407	Mm.381399	NM_013623	ENSMUSG00000028359	Orm3	Agp-3|Orm-3	orosomucoid 3	protein-coding	0.000000	0.522388	-34(TGTTATAAAAGC,-,0.00)
mm_94540.1	chr11	9139201	9139401	+	1	NA	NA	NA	20794	NM_001159402	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.010000	0.447761	
mm_56019.1	chr6	86526464	86526664	-	1	NA	NA	NA	-399	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.145000	0.731343	
mm_12529.1	chr2	72180348	72180548	+	1	NA	NA	NA	-105189	NM_023057	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.005000	0.462687	
mm_88926.1	chr10	81233069	81233269	+	1	NA	NA	NA	6	NM_001034895	103406	Mm.158783	NM_001034895	ENSMUSG00000034949	Zfr2	2010013I23Rik|9130206N08Rik|AW045600|mKIAA1086	zinc finger RNA binding protein 2	protein-coding	0.110000	0.716418	
mm_105108.1	chr11	100970427	100970627	-	1	NA	NA	NA	90	NM_008986	19285	Mm.21864	NM_008986	ENSMUSG00000004044	Ptrf	2310075E07Rik|AW546441|Cav-p60|Cavin	polymerase I and transcript release factor	protein-coding	0.100000	0.661692	
mm_6041.1	chr1	59684717	59684917	-	1	NA	NA	NA	-189	NM_018868	55989	Mm.220367	NM_018868	ENSMUSG00000026020	Nop58	MSSP|Nol5|SIK|nop5	NOP58 ribonucleoprotein	protein-coding	0.030000	0.313433	
mm_86545.1	chr10	9732457	9732657	+	1	NA	NA	NA	47835	NR_038036	620417	Mm.378085	NR_038036		Gm6150	-	predicted gene 6150	ncRNA	0.020000	0.527363	
mm_40521.1	chr5	57913279	57913479	+	1	NA	NA	NA	195298	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.020000	0.462687	
mm_23300.1	chr3	52396448	52396648	+	1	NA	NA	NA	128211	NM_019739	56458	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.025000	0.547264	
mm_30549.1	chr4	3684798	3684998	+	1	NA	NA	NA	6777	NM_010747	17096	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.000000	0.457711	-99(TTCTTTAAAAGC,-,0.00),-98(TCTTTAAAAGCT,+,0.00)
mm_81587.1	chr9	110476866	110477066	+	1	NA	NA	NA	8	NM_010628	16578	Mm.42170	NM_010628	ENSMUSG00000032489	Kif9	-	kinesin family member 9	protein-coding	0.045000	0.532338	
mm_147691.1	chr18	60744578	60744778	-	1	NA	NA	NA	-29918	NM_020600	20044	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.005000	0.477612	
mm_26134.1	chr3	137908371	137908571	+	1	NA	NA	NA	-10084	NM_019920	56692	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0.025000	0.507463	
mm_19838.1	chr2	112493166	112493366	-	1	NA	NA	NA	302	NM_028844	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.125000	0.776119	
mm_37368.1	chr4	120825674	120825874	-	1	NA	NA	NA	-33	NM_008692	18046	Mm.435590	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0.105000	0.676617	
mm_153165.1	chr19	34493231	34493431	-	1	NA	NA	NA	-18196	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.010000	0.462687	-5(GCTTTTATATTC,+,0.00)
mm_69302.1	chr7	128376014	128376214	-	1	NA	NA	NA	42058	NM_026418	67865	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.000000	0.562189	
mm_56491.1	chr6	99194411	99194611	-	1	NA	NA	NA	72004	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.000000	0.303483	
mm_131911.1	chr16	23290399	23290599	+	1	NA	NA	NA	29	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.025000	0.507463	
mm_128389.1	chr15	43166698	43166898	-	1	NA	NA	NA	4020	NM_172815	239405	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.000000	0.407960	
mm_10820.1	chr2	24350951	24351151	+	1	NA	NA	NA	5680	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.005000	0.407960	
mm_24242.1	chr3	89136020	89136220	+	1	NA	NA	NA	-22	NM_013631	18770	Mm.383180	NM_013631	ENSMUSG00000041237	Pklr	Pk-1|Pk1|R-PK	pyruvate kinase liver and red blood cell	protein-coding	0.010000	0.562189	
mm_126612.1	chr15	83033343	83033543	+	1	NA	NA	NA	-46	NM_001271411	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.020000	0.557214	
mm_35195.1	chr4	16147060	16147260	-	1	NA	NA	NA	16483	NM_138952	192656	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.000000	0.333333	
mm_61292.1	chr7	67647477	67647677	+	1	NA	NA	NA	167	NM_025905	67009	Mm.249356	NM_025905	ENSMUSG00000030555	Ttc23	1600012K10Rik	tetratricopeptide repeat domain 23	protein-coding	0.015000	0.417910	
mm_48614.1	chr5	144479646	144479846	-	1	NA	NA	NA	-66141	NM_016789	53324	Mm.10099	NM_016789	ENSMUSG00000059991	Nptx2	Narp|np2	neuronal pentraxin 2	protein-coding	0.005000	0.477612	-31(GACTTTTAAGAG,-,0.00),-29(CTTTTAAGAGAA,+,0.00)
mm_157363.1	chrX	37168742	37168942	-	1	NA	NA	NA	0	NM_001033785	434756	Mm.471848	NM_001033785	ENSMUSG00000036551	Akap14	-	A kinase (PRKA) anchor protein 14	protein-coding	0.005000	0.477612	
mm_6480.1	chr1	74091202	74091402	-	1	NA	NA	NA	33145	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.020000	0.626866	
mm_105236.1	chr11	102317769	102317969	-	1	NA	NA	NA	-582	NM_001044383	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.115000	0.781095	
mm_138460.1	chr17	35140725	35140925	+	1	NA	NA	NA	5111	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.050000	0.631841	
mm_131649.1	chr16	20535366	20535566	+	1	NA	NA	NA	-14	NM_001302970	11773	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.090000	0.651741	
mm_158515.1	chrX	143393785	143393985	-	1	NA	NA	NA	377	NM_031258	83453	Mm.157697	NM_031258	ENSMUSG00000031283	Chrdl1	CHL|CHL1|Nrln1|VOPT	chordin-like 1	protein-coding	0.055000	0.636816	
mm_102972.1	chr11	69668894	69669094	-	1	NA	NA	NA	-2824	NR_110993	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.010000	0.467662	
mm_93890.1	chr10	125328466	125328666	-	1	NA	NA	NA	-31	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.025000	0.442786	
mm_138570.1	chr17	35381446	35381646	+	1	NA	NA	NA	1929	NM_001143689	15015	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	0.010000	0.437811	
mm_43378.1	chr5	135685652	135685852	+	1	NA	NA	NA	-3393	NM_008898	18984	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.005000	0.407960	
mm_85289.1	chr9	99876070	99876270	-	1	NA	NA	NA	0	NM_011440	20669	Mm.261595	NM_011440	ENSMUSG00000053747	Sox14	-	SRY (sex determining region Y)-box 14	protein-coding	0.080000	0.676617	
mm_140099.1	chr17	78308377	78308577	+	1	NA	NA	NA	108229	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.025000	0.502488	
mm_124557.1	chr14	122917493	122917693	-	1	NA	NA	NA	-4428	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.000000	0.358209	
mm_170011.1	chr17	17179184	17179384	+	1	NA	NA	NA	57901	NM_011765	22759	Mm.436633	NM_011765	ENSMUSG00000095990	Zfp97	NGD16-4	zinc finger protein 97	protein-coding	0.015000	0.462687	
mm_168677.1	chr11	94653681	94653881	+	1	NA	NA	NA	-10	NM_053161	94064	Mm.34951	NM_053161	ENSMUSG00000024414	Mrpl27	A630055F16Rik|D11Moh47|D18Ertd643e	mitochondrial ribosomal protein L27	protein-coding	0.075000	0.597015	
mm_141274.1	chr17	27820378	27820578	-	1	NA	NA	NA	64	NM_001033279	224647	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0.160000	0.810945	
mm_124143.1	chr14	87141123	87141323	-	1	NA	NA	NA	-109	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding	0.090000	0.651741	
mm_74776.1	chr8	21906332	21906532	-	1	NA	NA	NA	0	NM_139221	246081	Mm.221026	NM_139221	ENSMUSG00000045337	Defb11	BD-11|Defb8	defensin beta 11	protein-coding	0.000000	0.507463	
mm_124017.1	chr14	76515396	76515596	-	1	NA	NA	NA	5359	NR_045660	75789	Mm.159571	NR_045660	ENSMUSG00000097172	4930444M15Rik	-	RIKEN cDNA 4930444M15 gene	ncRNA	0.015000	0.532338	
mm_72416.1	chr8	81861582	81861782	+	1	NA	NA	NA	519120	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.030000	0.492537	
mm_95895.1	chr11	58183841	58184041	+	1	NA	NA	NA	98	NM_001135115	631323	Mm.394103	NM_001135115		Gm12250	Irgb10|OTTMUSG00000005723	predicted gene 12250	protein-coding	0.015000	0.507463	-32(CTCTTTATACAC,+,0.00)
mm_85047.1	chr9	89704943	89705143	-	1	NA	NA	NA	0	NM_025360	66111	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	0.095000	0.671642	
mm_26527.1	chr3	145988577	145988777	+	1	NA	NA	NA	807	NM_001166064	214804	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	0.120000	0.711443	
mm_74178.1	chr8	123454204	123454404	+	1	NA	NA	NA	11045	NM_001281803	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.030000	0.532338	88(TCCTATATAAGC,-,0.00)
mm_110965.1	chr12	76822434	76822634	-	1	NA	NA	NA	-10	NM_134050	104886	Mm.172847	NM_134050	ENSMUSG00000021062	Rab15	2310012G06Rik|AI840042	RAB15, member RAS oncogene family	protein-coding	0.160000	0.825871	
mm_34794.1	chr4	154531170	154531370	+	1	NA	NA	NA	105097	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	0.040000	0.522388	
mm_147298.1	chr18	39519127	39519327	-	1	NA	NA	NA	-31982	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.020000	0.512438	
mm_148346.1	chr18	84669781	84669981	-	1	NA	NA	NA	12178	NM_001289531	66054	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.050000	0.582090	
mm_117027.1	chr13	58264634	58264834	-	1	NA	NA	NA	9454	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.015000	0.338308	
mm_93504.1	chr10	112928894	112929094	-	1	NA	NA	NA	32	NM_001033474	382423	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132|ENSMUSG00000074747	ataxin 7-like 3B	protein-coding	0.120000	0.711443	
mm_123654.1	chr14	69242488	69242688	-	1	NA	NA	NA	42515	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.020000	0.437811	
mm_66287.1	chr7	37773887	37774087	-	1	NA	NA	NA	-4235	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.035000	0.437811	48(GCCTTTAAAAAA,-,0.00),49(CCTTTAAAAAAG,+,0.00)
mm_127219.1	chr15	99393140	99393340	+	1	NA	NA	NA	21	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.105000	0.671642	
mm_8301.1	chr1	144002157	144002357	-	1	NA	NA	NA	1892	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.020000	0.417910	-5(GCGTTTTTAAAG,-,0.00),-3(GTTTTTAAAGTC,+,0.00)
mm_108330.1	chr12	79963641	79963841	+	1	NA	NA	NA	-27477	NR_131074	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.015000	0.517413	
mm_70685.1	chr8	15011122	15011322	+	1	NA	NA	NA	197	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.130000	0.726368	
mm_15687.1	chr2	163645147	163645347	+	1	NA	NA	NA	-104	NM_012032	26943	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	0.060000	0.597015	
mm_61481.1	chr7	75669617	75669817	+	1	NA	NA	NA	-178621	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.020000	0.452736	
mm_167281.1	chr8	36732783	36732983	-	1	NA	NA	NA	171	NM_001194941	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.135000	0.711443	
mm_30394.1	chr3	152248234	152248434	-	1	NA	NA	NA	17986	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.000000	0.388060	
mm_58027.1	chr6	136661855	136662055	-	1	NA	NA	NA	-62	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.040000	0.621891	
mm_78792.1	chr9	44045850	44046050	+	1	NA	NA	NA	2566	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.020000	0.567164	
mm_139324.1	chr17	48450838	48451038	+	1	NA	NA	NA	563	NM_027292	70026	Mm.22613	NM_027292	ENSMUSG00000023995	Tspo2	2510027D20Rik|Bzrpl1	translocator protein 2	protein-coding	0.035000	0.592040	
mm_43475.1	chr5	136695109	136695309	+	1	NA	NA	NA	1032	NM_001085387	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.020000	0.582090	
mm_91700.1	chr10	44004271	44004471	-	1	NA	NA	NA	475	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.095000	0.706468	
mm_83673.1	chr9	49798738	49798938	-	1	NA	NA	NA	231	NM_001081445	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding	0.065000	0.582090	
mm_14302.1	chr2	129100886	129101086	+	1	NA	NA	NA	-10	NM_009086	20017	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	0.060000	0.587065	
mm_43183.1	chr5	128570643	128570843	+	1	NA	NA	NA	29944	NR_015517	319616	Mm.387738	NR_015517	ENSMUSG00000072591	5930412G12Rik	-	RIKEN cDNA 5930412G12 gene	ncRNA	0.020000	0.567164	
mm_146431.1	chr18	84871470	84871670	+	1	NA	NA	NA	20156	NM_025797	109672	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.030000	0.452736	
mm_125031.1	chr15	25754690	25754890	+	1	NA	NA	NA	-88508	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.020000	0.517413	
mm_103239.1	chr11	70687132	70687332	-	1	NA	NA	NA	873	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.025000	0.587065	
mm_45991.1	chr5	90504268	90504468	-	1	NA	NA	NA	13654	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.020000	0.348259	
mm_89171.1	chr10	86311226	86311426	+	1	NA	NA	NA	10914	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.005000	0.383085	
mm_47634.1	chr5	125303109	125303309	-	1	NA	NA	NA	37885	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.025000	0.522388	
mm_164356.1	chr16	20928789	20928989	+	1	NA	NA	NA	-194378	NM_009379	21832	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.010000	0.517413	
mm_21263.1	chr2	156780419	156780619	-	1	NA	NA	NA	5055	NM_172118	98932	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0.040000	0.562189	
mm_162070.1	chrX	16522819	16523019	+	1	NA	NA	NA	38	NM_001039943	664725	Mm.45302	NM_001039943		Cypt7	-	cysteine-rich perinuclear theca 7	protein-coding	0.020000	0.512438	
mm_33107.1	chr4	124709080	124709280	+	1	NA	NA	NA	-5681	NM_029157	75062	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	0.070000	0.691542	
mm_5714.1	chr1	44019835	44020035	-	1	NA	NA	NA	71	NM_001013799	433294	Mm.123621	NM_001013799	ENSMUSG00000047343	Mettl21c	A530098C11Rik	methyltransferase like 21C	protein-coding	0.005000	0.393035	
mm_132031.1	chr16	27388962	27389162	+	1	NA	NA	NA	106	NM_001289436	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.130000	0.721393	
mm_80510.1	chr9	79688691	79688891	+	1	NA	NA	NA	29931	NM_001290308	12816	Mm.3819	NM_007730	ENSMUSG00000032332	Col12a1	-	collagen, type XII, alpha 1	protein-coding	0.015000	0.482587	
mm_25424.1	chr3	107874695	107874895	+	1	NA	NA	NA	-2435	NM_133867	99662	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0.020000	0.482587	
mm_162546.1	chr1	170707629	170707829	+	1	NA	NA	NA	63197	NM_177068	320078	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.010000	0.467662	
mm_81660.1	chr9	110992718	110992918	+	1	NA	NA	NA	-3105	NM_153100	235636	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	0.010000	0.517413	
mm_161475.1	chr15	82015352	82015552	+	1	NA	NA	NA	688	NM_134095	28075	Mm.474453	NM_134095	ENSMUSG00000022472	Desi1	AI427858|AI850401|D15Wsu75e|DeSI-1|Fam152b|Pppde2	desumoylating isopeptidase 1	protein-coding	0.055000	0.577114	
mm_156200.1	chrX	134404753	134404953	+	1	NA	NA	NA	73	NM_010078	13497	Mm.121662	NM_010078	ENSMUSG00000000223	Drp2	AW495265|DRP-2	dystrophin related protein 2	protein-coding	0.015000	0.611940	
mm_108133.1	chr12	76081553	76081753	+	1	NA	NA	NA	95606	NM_010157	13983	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0.020000	0.432836	
mm_63127.1	chr7	123001504	123001704	+	1	NA	NA	NA	31040	NM_175023	19647	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6	protein-coding	0.045000	0.582090	
mm_14914.1	chr2	150770189	150770389	+	1	NA	NA	NA	-16507	NM_153781	110078	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.035000	0.567164	
mm_12527.1	chr2	72179959	72180159	+	1	NA	NA	NA	-105578	NM_023057	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.035000	0.547264	
mm_53297.1	chr6	129045726	129045926	+	1	NA	NA	NA	-75	NR_024262	232408	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.010000	0.402985	
mm_92936.1	chr10	84533845	84534045	-	1	NA	NA	NA	-57	NM_175451	216197	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.175000	0.810945	
mm_47786.1	chr5	132193284	132193484	-	1	NA	NA	NA	313115	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.010000	0.363184	66(CCTTTTAAACCT,+,0.00)
mm_150384.1	chr19	36348290	36348490	+	1	NA	NA	NA	-30677	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.180000	0.815920	
mm_82035.1	chr9	122117192	122117392	+	1	NA	NA	NA	26	NM_133741	20623	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0.145000	0.736318	
mm_101967.1	chr11	50308757	50308957	-	1	NA	NA	NA	-16521	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.005000	0.412935	
mm_101149.1	chr11	16636035	16636235	-	1	NA	NA	NA	-116068	NM_207655	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.040000	0.422886	
mm_8991.1	chr1	165707968	165708168	-	1	NA	NA	NA	26	NM_178593	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.080000	0.741294	
mm_140020.1	chr17	73804851	73805051	+	1	NA	NA	NA	110	NM_020578	57440	Mm.18526	NM_020578	ENSMUSG00000024065	Ehd3	Ehd2	EH-domain containing 3	protein-coding	0.085000	0.616915	-90(GCATTTAAACGC,+,0.00)
mm_83728.1	chr9	51008923	51009123	-	1	NA	NA	NA	50	NM_178710	235344	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0.145000	0.805970	
mm_71476.1	chr8	46535640	46535840	+	1	NA	NA	NA	-16329	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.010000	0.393035	
mm_75307.1	chr8	41133895	41134095	-	1	NA	NA	NA	-269	NM_001005863	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.095000	0.631841	
mm_4720.1	chr1	181144136	181144336	+	1	NA	NA	NA	-32	NM_026171	67459	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	0.100000	0.631841	
mm_13258.1	chr2	98665029	98665229	+	1	NA	NA	NA	1197472	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.020000	0.348259	
mm_71552.1	chr8	48110075	48110275	+	1	NA	NA	NA	162	NM_001161515	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	0.150000	0.746269	
mm_17513.1	chr2	29191430	29191630	-	1	NA	NA	NA	56569	NM_001305805	171171	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	0.005000	0.532338	
mm_36541.1	chr4	86668424	86668624	-	1	NA	NA	NA	1535	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.045000	0.507463	
mm_159114.1	chr2	57998146	57998346	+	1	NA	NA	NA	91	NM_172855	241391	Mm.484118	NM_172855	ENSMUSG00000026828	Galnt5	4832424J23	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5	protein-coding	0.020000	0.552239	
mm_109887.1	chr12	5375597	5375797	-	1	NA	NA	NA	-15	NM_001164493	208439	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.145000	0.731343	
mm_172274.1	chr6	85587765	85587965	+	1	NA	NA	NA	334	NM_145223	236266	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	Alstrom syndrome 1	protein-coding	0.065000	0.641791	
mm_4402.1	chr1	172430916	172431116	+	1	NA	NA	NA	-44344	NM_029612	98365	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	0.020000	0.567164	
mm_40059.1	chr5	33996565	33996765	+	1	NA	NA	NA	681	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.150000	0.751244	
mm_132828.1	chr16	45227188	45227388	+	1	NA	NA	NA	2951	NM_177584	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.000000	0.368159	
mm_172622.1	chr8	20148906	20149106	+	1	NA	NA	NA	148426	NR_030708	547150	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0.005000	0.467662	
mm_36721.1	chr4	98727872	98728072	-	1	NA	NA	NA	1218	NM_001081202	381591	Mm.34340	NM_001081202	ENSMUSG00000087166	L1td1	AA546746|AB211064|D76865|ECAT11	LINE-1 type transposase domain containing 1	protein-coding	0.025000	0.427861	24(GACTATATAGGA,-,0.00)
mm_99202.1	chr11	101022641	101022841	+	1	NA	NA	NA	-7599	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.020000	0.472637	
mm_27801.1	chr3	75956122	75956322	-	1	NA	NA	NA	727	NM_175193	73124	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.065000	0.606965	
mm_99222.1	chr11	101036635	101036835	+	1	NA	NA	NA	6395	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.020000	0.457711	
mm_86514.1	chr10	7680872	7681072	+	1	NA	NA	NA	186	NR_033219	407824	Mm.393120	NR_033219		BC020402	-	cDNA sequence BC020402	ncRNA	0.130000	0.656716	
mm_15788.1	chr2	164425317	164425517	+	1	NA	NA	NA	17771	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.015000	0.407960	-25(CCATTTAAAAAC,+,0.00)
mm_627.1	chr1	40237120	40237320	+	1	NA	NA	NA	12140	NM_008362	16177	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.020000	0.487562	
mm_97772.1	chr11	82057787	82057987	+	1	NA	NA	NA	55	NM_011330	20292	Mm.4686	NM_011330	ENSMUSG00000020676	Ccl11	Scya11|eotaxin	chemokine (C-C motif) ligand 11	protein-coding	0.010000	0.537313	-2(CTCCCTATAAAG,-,0.00),0(CCCTATAAAGCT,+,0.00)
mm_138961.1	chr17	44229679	44229879	+	1	NA	NA	NA	41207	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	0.005000	0.412935	
mm_88335.1	chr10	75573419	75573619	+	1	NA	NA	NA	24	NM_008116	14598	Mm.4559	NM_008116	ENSMUSG00000006345	Ggt1	CD224|GGT|GGT 1|GGT-1|Ggtp|dwg	gamma-glutamyltransferase 1	protein-coding	0.030000	0.557214	
mm_99572.1	chr11	103979514	103979714	+	1	NA	NA	NA	12743	NM_007477	11841	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.010000	0.537313	
mm_76446.1	chr8	85071981	85072181	-	1	NA	NA	NA	324	NM_001039514	330817	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	0.120000	0.666667	
mm_90258.1	chr10	122448463	122448663	+	1	NA	NA	NA	64	NM_016847	54140	Mm.4351	NM_016847	ENSMUSG00000020123	Avpr1a	AVPR|Avpr1|V1a|V1aR	arginine vasopressin receptor 1A	protein-coding	0.030000	0.567164	
mm_166878.1	chr7	25412885	25413085	-	1	NA	NA	NA	-99	NM_153576	232983	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0.010000	0.472637	
mm_65271.1	chr7	24133985	24134185	-	1	NA	NA	NA	-78	NM_019941	56525	Mm.295595	NM_019941	ENSMUSG00000047603	Zfp235	0610030O19Rik|AI428448	zinc finger protein 235	protein-coding	0.055000	0.537313	
mm_112032.1	chr12	111504961	111505161	-	1	NA	NA	NA	-19238	NM_001033248	212539	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0.025000	0.547264	
mm_89584.1	chr10	95778814	95779014	+	1	NA	NA	NA	-161749	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.020000	0.437811	
mm_158957.1	chr1	90967494	90967694	-	1	NA	NA	NA	73	NM_001159725	19329	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	0.030000	0.527363	
mm_82588.1	chr9	21238716	21238916	-	1	NA	NA	NA	516	NM_016679	50868	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.135000	0.756219	
mm_157775.1	chrX	73780171	73780371	-	1	NA	NA	NA	5866	NM_019684	56504	Mm.111904	NM_019684	ENSMUSG00000002007	Srpk3	Mssk1|Stk23	serine/arginine-rich protein specific kinase 3	protein-coding	0.005000	0.502488	
mm_31923.1	chr4	85388175	85388375	+	1	NA	NA	NA	182819	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.000000	0.353234	
mm_170820.1	chr2	176520921	176521121	+	1	NA	NA	NA	17	NM_001177406	100303732	Mm.484983	NM_001177404	ENSMUSG00000095199	Zfp967	Gm14431|OTTMUSG00000016608	zinc finger protein 967	protein-coding	0.015000	0.487562	
mm_28551.1	chr3	93279623	93279823	-	1	NA	NA	NA	-40026	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.010000	0.388060	
mm_39140.1	chr4	155223141	155223341	-	1	NA	NA	NA	-706	NM_011385	20481	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.135000	0.726368	
mm_33564.1	chr4	131921055	131921255	+	1	NA	NA	NA	-616	NM_001201367	623230	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.045000	0.631841	
mm_126662.1	chr15	84298044	84298244	+	1	NA	NA	NA	-26576	NM_022321	64099	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0.010000	0.542289	
mm_12815.1	chr2	80315574	80315774	+	1	NA	NA	NA	208	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.140000	0.756219	
mm_52617.1	chr6	117173867	117174067	+	1	NA	NA	NA	5432	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.020000	0.532338	
mm_131157.1	chr16	6914165	6914365	+	1	NA	NA	NA	-155570	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.000000	0.427861	
mm_44881.1	chr5	34637054	34637254	-	1	NA	NA	NA	-40	NM_026660	68294	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	0.060000	0.631841	
mm_29928.1	chr3	131491232	131491432	-	1	NA	NA	NA	-73436	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.010000	0.402985	
mm_4082.1	chr1	166762037	166762237	+	1	NA	NA	NA	-80292	NM_001347135	240894	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	0.010000	0.462687	
mm_59533.1	chr7	27731320	27731520	+	1	NA	NA	NA	11	NM_009560	22718	Mm.66913	NM_009560	ENSMUSG00000037640	Zfp60	6330516O17Rik|AI426106|AI449354|Mfg-3|Mfg3	zinc finger protein 60	protein-coding	0.075000	0.597015	
mm_113412.1	chr13	34002299	34002499	+	1	NA	NA	NA	395	NM_001243192	20719	Mm.252210	NM_009254	ENSMUSG00000060147	Serpinb6a	4930482L21Rik|D330015H01Rik|PI-6|Serpinb6|Spi3|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6a	protein-coding	0.110000	0.746269	
mm_79609.1	chr9	58611422	58611622	+	1	NA	NA	NA	29282	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.000000	0.383085	
mm_128827.1	chr15	67176627	67176827	-	1	NA	NA	NA	155	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.055000	0.606965	
mm_43977.1	chr5	146260968	146261168	+	1	NA	NA	NA	29393	NM_153599	264064	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.100000	0.661692	
mm_115952.1	chr13	23746461	23746661	-	1	NA	NA	NA	-173	NM_175664	319178	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding	0.020000	0.417910	
mm_56693.1	chr6	114411360	114411560	-	1	NA	NA	NA	7794	NM_001252643	15465	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.000000	0.517413	
mm_128396.1	chr15	43282612	43282812	-	1	NA	NA	NA	24	NM_008388	16341	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	0.085000	0.582090	
mm_4864.1	chr1	187662380	187662580	+	1	NA	NA	NA	53474	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.020000	0.527363	
mm_150828.1	chr19	44746565	44746765	+	1	NA	NA	NA	-10729	NM_011037	18504	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0.105000	0.696517	
mm_71185.1	chr8	40863033	40863233	+	1	NA	NA	NA	766	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.025000	0.442786	12(CTTTTAATACCG,+,0.00)
mm_46809.1	chr5	113077135	113077335	-	1	NA	NA	NA	4349	NM_001159650	12962	Mm.378899	NM_021352	ENSMUSG00000029352	Crybb3	AI852419	crystallin, beta B3	protein-coding	0.020000	0.547264	
mm_86217.1	chr9	120068177	120068377	-	1	NA	NA	NA	19	NM_009987	13051	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	0.015000	0.512438	-24(CCTCATAGAGAG,+,0.00)
mm_145173.1	chr18	46931678	46931878	+	1	NA	NA	NA	9963	NM_001033446	381142	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	0.010000	0.517413	
mm_170811.1	chr2	176153324	176153524	-	1	NA	NA	NA	-73141	NM_001305137	100504263	Mm.379980	NM_001305136	ENSMUSG00000078894	2210418O10Rik	Gm6182	predicted gene 2210418O10Rik	protein-coding	0.015000	0.497512	
mm_113688.1	chr13	42866773	42866973	+	1	NA	NA	NA	626	NM_001302636	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.035000	0.577114	72(CTGTCTTTAAGG,-,0.00)
mm_166671.1	chr6	91757020	91757220	+	1	NA	NA	NA	50273	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.030000	0.597015	
mm_51111.1	chr6	67555505	67555705	+	1	NA	NA	NA	10094	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.000000	0.487562	
mm_37473.1	chr4	123565221	123565421	-	1	NA	NA	NA	-51099	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.020000	0.507463	
mm_9882.1	chr1	186309214	186309414	-	1	NA	NA	NA	-192004	NM_146106	226791	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0.015000	0.457711	
mm_87009.1	chr10	26871647	26871847	+	1	NA	NA	NA	99235	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.000000	0.368159	
mm_23024.1	chr3	34638258	34638458	+	1	NA	NA	NA	-106	NR_035433	100316679		NR_035433	ENSMUSG00000104797	Mir1897	Mirn1897|mmu-mir-1897	microRNA 1897	ncRNA	0.025000	0.497512	
mm_49067.1	chr6	5398327	5398527	+	1	NA	NA	NA	15041	NM_023048	65255	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0.045000	0.552239	
mm_12430.1	chr2	70601643	70601843	+	1	NA	NA	NA	-38386	NR_040496	68986	Mm.437697	NR_040496	ENSMUSG00000087264	Gad1os	1500002O10Rik	glutamate decarboxylase 1, opposite strand	ncRNA	0.005000	0.368159	
mm_96401.1	chr11	67250732	67250932	+	1	NA	NA	NA	13020	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.030000	0.492537	
mm_158388.1	chrX	136172079	136172279	-	1	NA	NA	NA	72	NM_001168578	66684	Mm.182094	NM_025703	ENSMUSG00000051579	Tceal8	3930402F23Rik	transcription elongation factor A (SII)-like 8	protein-coding	0.030000	0.547264	50(ACTTTAATAGTG,+,0.00)
mm_122745.1	chr14	54149239	54149439	-	1	NA	NA	NA	104590	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.467662	
mm_2108.1	chr1	87828480	87828680	+	1	NA	NA	NA	-24707	NM_177646	227333	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0.010000	0.482587	88(GTCTTTATAAAC,-,0.00)
mm_64035.1	chr7	140770071	140770271	+	1	NA	NA	NA	6339	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.005000	0.467662	
mm_45513.1	chr5	72504207	72504407	-	1	NA	NA	NA	-99	NM_016869	53419	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.050000	0.592040	
mm_159164.1	chr2	91932197	91932397	-	1	NA	NA	NA	0	NM_001291483	17242	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.015000	0.502488	
mm_97993.1	chr11	84092685	84092885	+	1	NA	NA	NA	-24428	NM_019819	56405	Mm.240885	NM_019819	ENSMUSG00000018648	Dusp14	1110014C10Rik|2310042C07Rik|D11Ertd395e|MKP-L|Mkp6	dual specificity phosphatase 14	protein-coding	0.015000	0.452736	
mm_97577.1	chr11	78940540	78940740	+	1	NA	NA	NA	15349	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.005000	0.582090	
mm_56813.1	chr6	116672353	116672553	-	1	NA	NA	NA	1383	NM_178045	213391	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.010000	0.527363	
mm_47977.1	chr5	135910779	135910979	-	1	NA	NA	NA	22960	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.020000	0.532338	
mm_152280.1	chr19	8839123	8839323	-	1	NA	NA	NA	23	NM_010316	14704	Mm.329700	NM_010316	ENSMUSG00000071658	Gng3	-	guanine nucleotide binding protein (G protein), gamma 3	protein-coding	0.010000	0.552239	
mm_110716.1	chr12	69537746	69537946	-	1	NA	NA	NA	45182	NM_001033236	207965	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0.030000	0.497512	
mm_79667.1	chr9	59665076	59665276	+	1	NA	NA	NA	8808	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.010000	0.497512	
mm_32792.1	chr4	116877340	116877540	+	1	NA	NA	NA	38	NM_001029912	74464	Mm.218946	NM_001029912	ENSMUSG00000033948	Zswim5	4933426E21Rik|AI503093|mKIAA1511	zinc finger SWIM-type containing 5	protein-coding	0.105000	0.721393	
mm_63596.1	chr7	128141113	128141313	+	1	NA	NA	NA	11645	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.010000	0.472637	
mm_126907.1	chr15	89765222	89765422	+	1	NA	NA	NA	76538	NM_018803	54526	Mm.261601	NM_018803	ENSMUSG00000063260	Syt10	-	synaptotagmin X	protein-coding	0.060000	0.517413	
mm_31352.1	chr4	46854181	46854381	+	1	NA	NA	NA	137433	NM_001081141	242425	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	0.030000	0.502488	
mm_158016.1	chrX	95956834	95957034	-	1	NA	NA	NA	40	NM_152822	76130	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	0.060000	0.587065	
mm_164383.1	chr16	31300410	31300610	-	1	NA	NA	NA	14298	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.005000	0.412935	
mm_140520.1	chr17	6106382	6106582	-	1	NA	NA	NA	-348	NM_001103181	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.055000	0.582090	
mm_64675.1	chr7	4501524	4501724	-	1	NA	NA	NA	56	NM_029834	232807	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.185000	0.805970	
mm_31961.1	chr4	86914174	86914374	+	1	NA	NA	NA	39860	NM_139306	230379	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0.005000	0.388060	
mm_13280.1	chr2	101624586	101624786	+	1	NA	NA	NA	-62	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.005000	0.512438	
mm_154678.1	chrX	7919761	7919961	+	1	NA	NA	NA	39	NM_013892	30052	Mm.4881	NM_013892	ENSMUSG00000039278	Pcsk1n	AI848336|KEP|PEN|PEN19|PEN20|Pan3|SAAS|SAASCT|bLEN|lLEN|proSAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding	0.100000	0.726368	
mm_65910.1	chr7	30194017	30194217	-	1	NA	NA	NA	931	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.050000	0.542289	
mm_57342.1	chr6	124747106	124747306	-	1	NA	NA	NA	-6127	NM_013535	14790	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.010000	0.626866	
mm_10578.1	chr2	18105624	18105824	+	1	NA	NA	NA	41139	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.005000	0.338308	-59(CCTTATAAACTT,+,0.00),89(TGCTTTTTAAAG,-,0.00)
mm_74478.1	chr8	4289439	4289639	-	1	NA	NA	NA	-13634	NM_011592	21856	Mm.195249	NM_011592	ENSMUSG00000002949	Timm44	0710005E20Rik|D8Ertd118e|Mimt44|Tim44	translocase of inner mitochondrial membrane 44	protein-coding	0.015000	0.303483	
mm_166100.1	chr4	144895315	144895515	+	1	NA	NA	NA	2278	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.005000	0.492537	
mm_34634.1	chr4	150614092	150614292	+	1	NA	NA	NA	37982	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.015000	0.552239	
mm_161177.1	chr13	41605947	41606147	+	1	NA	NA	NA	-169	NM_001163572	621976	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.185000	0.825871	
mm_150608.1	chr19	40831891	40832091	+	1	NA	NA	NA	712	NM_172839	240665	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.085000	0.696517	
mm_122537.1	chr14	47418056	47418256	-	1	NA	NA	NA	251	NM_144553	218977	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	discs, large (Drosophila) homolog-associated protein 5	protein-coding	0.055000	0.537313	
mm_47310.1	chr5	122456937	122457137	-	1	NA	NA	NA	34593	NM_019805	56317	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0.005000	0.308458	57(TTTTTTATACAC,+,0.00)
mm_53473.1	chr6	134925036	134925236	+	1	NA	NA	NA	-3956	NR_037956	381822	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	0.005000	0.303483	
mm_94569.1	chr11	11687625	11687825	+	1	NA	NA	NA	1800	NM_001025597	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.015000	0.412935	
mm_82726.1	chr9	25151518	25151718	-	1	NA	NA	NA	163	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.140000	0.771144	
mm_130949.1	chr15	103255140	103255340	-	1	NA	NA	NA	199	NM_008685	18022	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.075000	0.681592	
mm_128071.1	chr15	27630579	27630779	-	1	NA	NA	NA	14	NM_001013792	432940	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.130000	0.751244	
mm_116980.1	chr13	56289102	56289302	-	1	NA	NA	NA	7349	NM_019568	57266	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding	0.010000	0.557214	
mm_113421.1	chr13	34037563	34037763	+	1	NA	NA	NA	22	NM_026512	68021	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0.100000	0.676617	
mm_145199.1	chr18	49979365	49979565	+	1	NA	NA	NA	38	NM_001177759	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.065000	0.711443	
mm_22502.1	chr3	7389994	7390194	+	1	NA	NA	NA	23490	NM_008862	18767	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	0.010000	0.323383	
mm_10411.1	chr2	13579054	13579254	+	1	NA	NA	NA	4843	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.005000	0.373134	
mm_100384.1	chr11	119316894	119317094	+	1	NA	NA	NA	2207	NM_130886	170720	Mm.130832	NM_130886	ENSMUSG00000013483	Card14	Bimp2|CARMA2	caspase recruitment domain family, member 14	protein-coding	0.015000	0.577114	
mm_100810.1	chr11	5098943	5099143	-	1	NA	NA	NA	45	NM_001283062	14030	Mm.142822	NM_007968	ENSMUSG00000009079	Ewsr1	Ews|Ewsh	Ewing sarcoma breakpoint region 1	protein-coding	0.130000	0.686567	
mm_30841.1	chr4	24278683	24278883	+	1	NA	NA	NA	-217679	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.020000	0.472637	
mm_156661.1	chrX	157711452	157711652	+	1	NA	NA	NA	12579	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.010000	0.328358	
mm_158662.1	chrX	157491941	157492141	-	1	NA	NA	NA	5	NM_009214	20603	Mm.18652	NM_009214	ENSMUSG00000071708	Sms	AI427066|Gy|SPMSY|SpmST|gyro	spermine synthase	protein-coding	0.110000	0.756219	-99(TCCTCTAAGAGG,-,0.00),-98(CCTCTAAGAGGC,+,0.00)
mm_20275.1	chr2	126876060	126876260	-	1	NA	NA	NA	101	NM_001164325	58800	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	0.115000	0.681592	
mm_153024.1	chr19	31510913	31511113	-	1	NA	NA	NA	153357	NM_011160	19091	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0.000000	0.338308	
mm_112268.1	chr12	114141028	114141228	-	1	NA	NA	NA	328338	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.000000	0.452736	
mm_51296.1	chr6	72306750	72306950	+	1	NA	NA	NA	2240	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.015000	0.592040	
mm_13406.1	chr2	104027669	104027869	+	1	NA	NA	NA	-30	NM_020593	57443	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	0.100000	0.746269	
mm_137958.1	chr17	33092372	33092572	+	1	NA	NA	NA	3105	NM_001024950	240068	Mm.121392	NM_001024950	ENSMUSG00000067424	Zfp563	D10628|D130054H01|NTfin7|Zfp413	zinc finger protein 563	protein-coding	0.045000	0.572139	
mm_150764.1	chr19	44241962	44242162	+	1	NA	NA	NA	38774	NM_024450	30049	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	0.015000	0.358209	
mm_21250.1	chr2	156180068	156180268	-	1	NA	NA	NA	70	NM_001291114	170791	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.090000	0.651741	
mm_76375.1	chr8	84832149	84832349	-	1	NA	NA	NA	16	NR_033145	23863	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	0.125000	0.706468	
mm_60336.1	chr7	44335636	44335836	+	1	NA	NA	NA	25472	NM_001034115	243961	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3/ankyrin domain gene 1	protein-coding	0.085000	0.751244	
mm_14375.1	chr2	129630317	129630517	+	1	NA	NA	NA	37248	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.035000	0.587065	
mm_71236.1	chr8	40907806	40908006	+	1	NA	NA	NA	-18327	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.020000	0.427861	
mm_104944.1	chr11	100119609	100119809	-	1	NA	NA	NA	868	NM_001313949	16663	Mm.4646	NM_010662	ENSMUSG00000044041	Krt13	CK13|K13|Krt-1.13|Krt1-13	keratin 13	protein-coding	0.035000	0.492537	
mm_15907.1	chr2	165055543	165055743	+	1	NA	NA	NA	7	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.050000	0.616915	
mm_126099.1	chr15	78244669	78244869	+	1	NA	NA	NA	-42	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.010000	0.587065	
mm_48249.1	chr5	137787412	137787612	-	1	NA	NA	NA	-290	NM_001005426	381678	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	0.025000	0.472637	
mm_112823.1	chr13	20801796	20801996	+	1	NA	NA	NA	7783	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.020000	0.373134	
mm_86652.1	chr10	17724087	17724287	+	1	NA	NA	NA	959	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.080000	0.686567	
mm_119257.1	chr14	33940937	33941137	+	1	NA	NA	NA	-2	NM_019506	12165	Mm.422844	NM_019506	ENSMUSG00000072625	Gdf2	Bmp9	growth differentiation factor 2	protein-coding	0.020000	0.552239	
mm_72211.1	chr8	72646485	72646685	+	1	NA	NA	NA	-126	NM_176940	319555	Mm.212927	NM_176940	ENSMUSG00000048148	Nwd1	A230063L24Rik	NACHT and WD repeat domain containing 1	protein-coding	0.020000	0.547264	
mm_22222.1	chr2	174427784	174427984	-	1	NA	NA	NA	11155	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.015000	0.517413	
mm_78309.1	chr9	22655222	22655422	+	1	NA	NA	NA	179607	NM_178415	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.010000	0.467662	
mm_150787.1	chr19	44301187	44301387	+	1	NA	NA	NA	-1884	NR_039574	100628619		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.060000	0.572139	
mm_141902.1	chr17	34952367	34952567	-	1	NA	NA	NA	1	NR_027943	68763	Mm.28895	NR_015536	ENSMUSG00000092203	1110038B12Rik	0610009C20Rik|0910001G04Rik	RIKEN cDNA 1110038B12 gene	ncRNA	0.075000	0.611940	-35(GGGTATAAATGG,-,0.00)
mm_110197.1	chr12	27340435	27340635	-	1	NA	NA	NA	2183	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.015000	0.358209	
mm_158036.1	chrX	98757404	98757604	-	1	NA	NA	NA	133521	NM_052976	94190	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	0.005000	0.452736	
mm_148080.1	chr18	72724952	72725152	-	1	NA	NA	NA	-373983	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.015000	0.402985	
mm_39413.1	chr5	14684856	14685056	+	1	NA	NA	NA	170038	NM_001110796	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.010000	0.328358	
mm_77850.1	chr9	5304229	5304429	+	1	NA	NA	NA	-4520	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.005000	0.323383	-47(GCCCATATAGAG,-,0.00),-45(CCATATAGAGAA,+,0.00),6(GTTTTTATACAG,+,0.00)
mm_133014.1	chr16	56193509	56193709	+	1	NA	NA	NA	-10704	NM_174876	224224	Mm.151998	NM_174876	ENSMUSG00000035270	Impg2	IPM200|PG10.2|Rsbp|Spacrcan	interphotoreceptor matrix proteoglycan 2	protein-coding	0.010000	0.258706	
mm_53552.1	chr6	136872643	136872843	+	1	NA	NA	NA	3080	NM_008597	17313	Mm.243085	NM_008597	ENSMUSG00000030218	Mgp	Mglap	matrix Gla protein	protein-coding	0.050000	0.512438	
mm_39989.1	chr5	32491311	32491511	+	1	NA	NA	NA	32441	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.000000	0.343284	-85(GTTTTTAAAGTT,+,0.00)
mm_107561.1	chr12	41825706	41825906	+	1	NA	NA	NA	-339749	NM_010733	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.000000	0.313433	
mm_56445.1	chr6	97487740	97487940	-	1	NA	NA	NA	-20	NM_001346637	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.075000	0.681592	
mm_28385.1	chr3	90002178	90002378	-	1	NA	NA	NA	3518	NR_045749	100503469	Mm.440636	NR_045749	ENSMUSG00000105552	Gm19710	-	predicted gene, 19710	ncRNA	0.000000	0.522388	
mm_85796.1	chr9	109892361	109892561	-	1	NA	NA	NA	2818	NR_106057	102465660		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	0.020000	0.557214	
mm_19874.1	chr2	114048129	114048329	-	1	NA	NA	NA	4646	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.020000	0.442786	-100(TACTTTAAAAAG,-,0.00)
mm_161835.1	chr17	84596125	84596325	+	1	NA	NA	NA	-30274	NM_172256	213575	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0.025000	0.587065	
mm_63907.1	chr7	139213403	139213603	+	1	NA	NA	NA	-196	NM_001162540	57740	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	0.055000	0.636816	
mm_130322.1	chr15	97595306	97595506	-	1	NA	NA	NA	110416	NM_028003	71919	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.010000	0.557214	-35(CACTATAAAAGA,-,0.00)
mm_17341.1	chr2	26602108	26602308	-	1	NA	NA	NA	2209	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.000000	0.472637	
mm_82703.1	chr9	22468188	22468388	-	1	NA	NA	NA	68	NM_018739	55934	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	0.125000	0.741294	
mm_27275.1	chr3	40846754	40846954	-	1	NA	NA	NA	0	NM_028140	72175	Mm.130610	NM_028140	ENSMUSG00000025759	Mfsd8	2810423E13Rik|AI836898|AV142426|Cln7	major facilitator superfamily domain containing 8	protein-coding	0.090000	0.671642	
mm_106927.1	chr12	8393186	8393386	+	1	NA	NA	NA	79853	NM_021429	58240	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.000000	0.462687	
mm_5853.1	chr1	53296912	53297112	-	1	NA	NA	NA	16	NM_153556	227099	Mm.60499	NM_153556	ENSMUSG00000026098	Pms1	-	postmeiotic segregation increased 1 (S. cerevisiae)	protein-coding	0.100000	0.676617	
mm_156733.1	chrX	159942594	159942794	+	1	NA	NA	NA	1	NM_001290664	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.005000	0.497512	
mm_30428.1	chr3	152982102	152982302	-	1	NA	NA	NA	5	NM_012028	26938	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.065000	0.646766	
mm_1390.1	chr1	67122942	67123142	+	1	NA	NA	NA	15	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.010000	0.437811	
mm_137286.1	chr17	24736566	24736766	+	1	NA	NA	NA	73	NM_001346668	27361	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	0.060000	0.562189	
mm_133950.1	chr16	3976454	3976654	-	1	NA	NA	NA	78	NM_175547	268857	Mm.215994	NM_175547	ENSMUSG00000049871	Nlrc3	CLR16.2|D230007K08Rik|mFLJ00348	NLR family, CARD domain containing 3	protein-coding	0.005000	0.557214	
mm_15148.1	chr2	153988202	153988402	+	1	NA	NA	NA	13357	NM_001080811	545477	Mm.379973	NM_001080811	ENSMUSG00000078998	Bpifa6	EG545477|Gm5840|Splunc6	BPI fold containing family A, member 6	protein-coding	0.010000	0.422886	
mm_49033.1	chr6	4759743	4759943	+	1	NA	NA	NA	12537	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.005000	0.333333	
mm_139462.1	chr17	55953800	55954000	+	1	NA	NA	NA	1277	NM_015766	50498	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	0.030000	0.562189	
mm_39052.1	chr4	153483873	153484073	-	1	NA	NA	NA	-1143	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	0.010000	0.601990	
mm_37015.1	chr4	113261230	113261430	-	1	NA	NA	NA	25643	NM_001103199	230622	Mm.291107	NM_001103199	ENSMUSG00000087194	Skint6	OTTMUSG00000008519	selection and upkeep of intraepithelial T cells 6	protein-coding	0.000000	0.263682	
mm_81006.1	chr9	103442430	103442630	+	1	NA	NA	NA	18952	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.010000	0.427861	
mm_6528.1	chr1	74601283	74601483	-	1	NA	NA	NA	14	NM_021313	57751	Mm.280920	NM_021313	ENSMUSG00000026171	Rnf25	0610009H16Rik|AO7	ring finger protein 25	protein-coding	0.060000	0.562189	
mm_96824.1	chr11	69995705	69995905	+	1	NA	NA	NA	39	NM_030064	78246	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.075000	0.711443	
mm_59424.1	chr7	27124752	27124952	+	1	NA	NA	NA	4897	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.035000	0.522388	
mm_69095.1	chr7	127018823	127019023	-	1	NA	NA	NA	-1571	NM_030240	67278	Mm.345385	NM_030240	ENSMUSG00000030680	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0.055000	0.621891	
mm_161268.1	chr14	7027146	7027346	-	1	NA	NA	NA	203	NM_001164727	100038847	Mm.443041	NM_001164727	ENSMUSG00000093985	Gm10406	ENSMUSG00000072735	predicted gene 10406	protein-coding	0.090000	0.701493	
mm_171119.1	chr3	141609595	141609795	-	1	NA	NA	NA	144131	NM_001293561	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.040000	0.621891	
mm_113269.1	chr13	29014215	29014415	+	1	NA	NA	NA	-99	NR_045077	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0.015000	0.457711	
mm_111538.1	chr12	100887796	100887996	-	1	NA	NA	NA	11628	NM_001177674	238377	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.020000	0.577114	
mm_14400.1	chr2	130044436	130044636	+	1	NA	NA	NA	-28128	NR_105757	102466628		NR_105757	ENSMUSG00000098347	Mir6339	Gm27848|mmu-mir-6339	microRNA 6339	ncRNA	0.030000	0.532338	
mm_68380.1	chr7	109175051	109175251	-	1	NA	NA	NA	56	NM_001302205	109594	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0.195000	0.845771	
mm_42711.1	chr5	120431854	120432054	+	1	NA	NA	NA	68	NM_008499	16873	Mm.5151	NM_008499	ENSMUSG00000029595	Lhx5	Lim2	LIM homeobox protein 5	protein-coding	0.115000	0.646766	
mm_115429.1	chr13	117245350	117245550	+	1	NA	NA	NA	24877	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.005000	0.328358	15(GTTTTTAAGGTA,+,0.00)
mm_143750.1	chr17	81580526	81580726	-	1	NA	NA	NA	157761	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.427861	11(GCTTATATGTGG,+,0.00)
mm_166357.1	chr5	122458462	122458662	-	1	NA	NA	NA	36118	NM_019805	56317	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0.030000	0.537313	-45(CTTTTTAGACCA,+,0.00)
mm_23349.1	chr3	54755538	54755738	+	1	NA	NA	NA	56	NM_019483	55994	Mm.244353	NM_019483	ENSMUSG00000027796	Smad9	MADH6|Madh8|Madh9|Smad8	SMAD family member 9	protein-coding	0.140000	0.756219	
mm_3572.1	chr1	150517722	150517922	+	1	NA	NA	NA	-51657	NM_001110146	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.000000	0.348259	
mm_46803.1	chr5	113076441	113076641	-	1	NA	NA	NA	5043	NM_001159650	12962	Mm.378899	NM_021352	ENSMUSG00000029352	Crybb3	AI852419	crystallin, beta B3	protein-coding	0.015000	0.487562	
mm_138396.1	chr17	35052520	35052720	+	1	NA	NA	NA	2377	NM_033444	114584	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.040000	0.522388	
mm_138080.1	chr17	33974908	33975108	+	1	NA	NA	NA	3783	NR_004446	630499	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	0.005000	0.502488	
mm_23506.1	chr3	60529139	60529339	+	1	NA	NA	NA	28060	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.015000	0.467662	
mm_53071.1	chr6	124931302	124931502	+	1	NA	NA	NA	14	NM_001170341	30853	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.145000	0.751244	
mm_6857.1	chr1	84262552	84262752	-	1	NA	NA	NA	21993	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.005000	0.373134	-20(AGCTATTAAAAG,-,0.00)
mm_67514.1	chr7	80815691	80815891	-	1	NA	NA	NA	-12460	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.005000	0.363184	
mm_36630.1	chr4	91399902	91400102	-	1	NA	NA	NA	-18	NM_207685	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding	0.040000	0.592040	
mm_123305.1	chr14	61683769	61683969	-	1	NA	NA	NA	-1496	NR_028264	668253	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.020000	0.407960	66(TCCTTTAAAAAA,-,0.00)
mm_70361.1	chr8	8661700	8661900	+	1	NA	NA	NA	-1027	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.080000	0.641791	
mm_123019.1	chr14	55116151	55116351	-	1	NA	NA	NA	684	NM_177049	319984	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.015000	0.502488	
mm_172769.1	chr8	94178981	94179181	+	1	NA	NA	NA	-8	NM_013602	17748	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.085000	0.636816	
mm_29356.1	chr3	108529961	108530161	-	1	NA	NA	NA	6461	NM_001033304	229722	Mm.316890	NM_001033304	ENSMUSG00000040412	5330417C22Rik	BB183350	RIKEN cDNA 5330417C22 gene	protein-coding	0.005000	0.353234	2(CCTTTTCGAGAC,+,0.00)
mm_87572.1	chr10	56387785	56387985	+	1	NA	NA	NA	10585	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.035000	0.472637	
mm_143552.1	chr17	74080184	74080384	-	1	NA	NA	NA	-32368	NM_053188	94224	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.015000	0.452736	71(TTTTTTAAGGTC,+,0.00)
mm_46074.1	chr5	92323651	92323851	-	1	NA	NA	NA	4328	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.015000	0.363184	33(CCTTTAATACAT,+,0.00)
mm_88707.1	chr10	80150399	80150599	+	1	NA	NA	NA	817	NM_001305799	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.085000	0.751244	
mm_99065.1	chr11	99155304	99155504	+	1	NA	NA	NA	-327	NM_007719	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.030000	0.557214	
mm_158624.1	chrX	152875457	152875657	-	1	NA	NA	NA	93636	NM_010951	18241	Mm.5157	NM_010951	ENSMUSG00000025333	Gpr143	Oa1	G protein-coupled receptor 143	protein-coding	0.010000	0.368159	
mm_75868.1	chr8	70762914	70763114	-	1	NA	NA	NA	-2093	NM_183170	234384	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0.015000	0.542289	
mm_106685.1	chr12	3345294	3345494	+	1	NA	NA	NA	-19738	NM_008445	16570	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.010000	0.512438	
mm_119643.1	chr14	51984401	51984601	+	1	NA	NA	NA	-332	NM_001145921	268739	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	0.045000	0.601990	
mm_122421.1	chr14	43121057	43121257	-	1	NA	NA	NA	-105581	NM_001244671	100042055	Mm.429109	NM_001244671	ENSMUSG00000095226	Gm10377	ENSMUSG00000072606	predicted gene 10377	protein-coding	0.005000	0.298507	
mm_113791.1	chr13	45965366	45965566	+	1	NA	NA	NA	-475	NM_009124	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.055000	0.626866	
mm_89104.1	chr10	84576794	84576994	+	1	NA	NA	NA	-53	NM_146008	216198	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	0.080000	0.656716	-33(CCCTTTAAATAC,+,0.00),-33(CCCTTTAAATAC,-,0.00),-31(CTTTAAATACCG,+,0.00)
mm_130243.1	chr15	96638114	96638314	-	1	NA	NA	NA	3748	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.010000	0.487562	
mm_41962.1	chr5	106458590	106458790	+	1	NA	NA	NA	-524	NM_001005477	104382	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH-like 2 (Drosophila)	protein-coding	0.110000	0.696517	
mm_29487.1	chr3	115714804	115715004	-	1	NA	NA	NA	151	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.050000	0.656716	
mm_99057.1	chr11	99052085	99052285	+	1	NA	NA	NA	10925	NM_010517	16010	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.025000	0.577114	
mm_44659.1	chr5	28458748	28458948	-	1	NA	NA	NA	-8136	NR_015562	654796	Mm.57202	NR_015562	ENSMUSG00000097726	9530036O11Rik	-	RIKEN cDNA 9530036O11Rik	ncRNA	0.050000	0.582090	
mm_55654.1	chr6	72380350	72380550	-	1	NA	NA	NA	18	NM_016872	53620	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0.115000	0.751244	
mm_67268.1	chr7	75780450	75780650	-	1	NA	NA	NA	-67788	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.005000	0.457711	
mm_20628.1	chr2	131992958	131993158	-	1	NA	NA	NA	36930	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.010000	0.393035	
mm_125247.1	chr15	34496147	34496347	+	1	NA	NA	NA	936	NM_152894	67724	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0.030000	0.437811	
mm_148157.1	chr18	77565277	77565477	-	1	NA	NA	NA	-241	NM_001164504	225743	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0.155000	0.786070	
mm_15545.1	chr2	158409696	158409896	+	1	NA	NA	NA	-57	NM_001291137	228850	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0.120000	0.661692	
mm_146994.1	chr18	34349669	34349869	-	1	NA	NA	NA	18624	NM_025527	66384	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	0.040000	0.597015	
mm_35597.1	chr4	43030343	43030543	-	1	NA	NA	NA	941	NM_023231	66592	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	0.040000	0.522388	
mm_2587.1	chr1	118679330	118679530	+	1	NA	NA	NA	51485	NM_023755	81879	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.025000	0.502488	
mm_43922.1	chr5	144768444	144768644	+	1	NA	NA	NA	-248	NM_001081362	100683	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0.125000	0.706468	
mm_21149.1	chr2	154407953	154408153	-	1	NA	NA	NA	31	NM_009228	20648	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	0.125000	0.771144	
mm_170073.1	chr17	33414233	33414433	+	1	NA	NA	NA	-18566	NM_183282	69481	Mm.154333	NM_183282	ENSMUSG00000092519	Actl9	1700029I08Rik|AV259599	actin-like 9	protein-coding	0.035000	0.601990	
mm_140340.1	chr17	86821057	86821257	+	1	NA	NA	NA	67293	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.015000	0.422886	
mm_145859.1	chr18	65456104	65456304	+	1	NA	NA	NA	25207	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.338308	-42(CTCTTTATAAAA,-,0.00),16(CCTTTTCTAGGT,+,0.00)
mm_81384.1	chr9	108945283	108945483	+	1	NA	NA	NA	-8362	NM_007738	12836	Mm.6200	NM_007738	ENSMUSG00000025650	Col7a1	AW209154	collagen, type VII, alpha 1	protein-coding	0.035000	0.587065	
mm_74262.1	chr8	124897819	124898019	+	1	NA	NA	NA	33	NM_001111141	244666	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	0.120000	0.681592	-66(GCGTCTTAAGGC,-,0.00)
mm_141233.1	chr17	27436620	27436820	-	1	NA	NA	NA	66813	NM_001013385	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.005000	0.442786	
mm_159279.1	chr2	165664487	165664687	+	1	NA	NA	NA	9289	NM_010165	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	0.010000	0.427861	-18(TCATTTTAAAGG,-,0.00)
mm_46681.1	chr5	109558851	109559051	-	1	NA	NA	NA	42	NM_016715	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.135000	0.711443	
mm_152300.1	chr19	9083708	9083908	-	1	NA	NA	NA	4148	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.000000	0.427861	
mm_168944.1	chr12	72917662	72917862	-	1	NA	NA	NA	3	NM_029444	75801	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	0.060000	0.696517	
mm_164111.1	chr15	29506346	29506546	-	1	NA	NA	NA	-666147	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.010000	0.348259	-46(GATTTTAAAAAG,-,0.00)
mm_60816.1	chr7	45699976	45700176	+	1	NA	NA	NA	109	NM_009800	12348	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	0.100000	0.706468	
mm_32708.1	chr4	116123732	116123932	+	1	NA	NA	NA	-8	NR_131048	76786	Mm.373813	NR_131048	ENSMUSG00000028700	2510003B16Rik	-	RIKEN cDNA 2510003B16 gene	ncRNA	0.040000	0.577114	
mm_164583.1	chr17	25827786	25827986	+	1	NA	NA	NA	-1157	NM_028101	72106	Mm.277599	NM_028101	ENSMUSG00000025736	Jmjd8	2610003J06Rik	jumonji domain containing 8	protein-coding	0.055000	0.567164	
mm_114096.1	chr13	54701368	54701568	+	1	NA	NA	NA	5	NM_001033364	268663	Mm.315382	NM_001033364	ENSMUSG00000034918	Cdhr2	Gm624|PC-LKC|Pcdh24	cadherin-related family member 2	protein-coding	0.025000	0.606965	
mm_19687.1	chr2	103460259	103460459	-	1	NA	NA	NA	24794	NM_009804	12359	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0.025000	0.522388	
mm_59701.1	chr7	28692763	28692963	+	1	NA	NA	NA	14	NM_207238	233040	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	0.025000	0.532338	
mm_83399.1	chr9	44734106	44734306	-	1	NA	NA	NA	992	NM_153537	102693	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.090000	0.676617	
mm_89592.1	chr10	95940638	95940838	+	1	NA	NA	NA	75	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.135000	0.796020	
mm_81621.1	chr9	110826914	110827114	+	1	NA	NA	NA	324	NM_199471	272643	Mm.458525	NM_199471	ENSMUSG00000058398	Prss43	Gm661|Tessp3	protease, serine 43	protein-coding	0.040000	0.611940	
mm_122882.1	chr14	54926918	54927118	-	1	NA	NA	NA	-230	NM_010112	13644	Mm.236438	NM_010112	ENSMUSG00000022203	Efs	-	embryonal Fyn-associated substrate	protein-coding	0.045000	0.626866	
mm_86108.1	chr9	115310416	115310616	-	1	NA	NA	NA	-95	NM_024222	68292	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0.095000	0.701493	
mm_80923.1	chr9	101251436	101251636	+	1	NA	NA	NA	296	NM_001161362	235542	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0.120000	0.800995	
mm_56558.1	chr6	101199098	101199298	-	1	NA	NA	NA	178699	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.025000	0.472637	-32(GTATATATAGCG,+,0.00)
mm_142123.1	chr17	35897010	35897210	-	1	NA	NA	NA	268	NM_001033630	69662	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	0.125000	0.800995	
mm_133553.1	chr16	91377443	91377643	+	1	NA	NA	NA	4760	NM_001110498	15976	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.005000	0.447761	
mm_118889.1	chr14	26590471	26590671	+	1	NA	NA	NA	11021	NM_145969	211922	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	0.000000	0.437811	
mm_107105.1	chr12	17765296	17765496	+	1	NA	NA	NA	74582	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.000000	0.507463	
mm_163932.1	chr14	47995100	47995300	+	1	NA	NA	NA	96336	NR_045959	73961	Mm.390702	NR_045959		4930447J18Rik	4930425M13Rik	RIKEN cDNA 4930447J18 gene	ncRNA	0.005000	0.383085	-76(AGGCTTATAAGC,-,0.00)
mm_118660.1	chr14	21831425	21831625	+	1	NA	NA	NA	-36	NM_011695	22334	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0.105000	0.721393	
mm_86679.1	chr10	18318510	18318710	+	1	NA	NA	NA	-83629	NM_144820	215814	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	0.115000	0.756219	
mm_65233.1	chr7	19733075	19733275	-	1	NA	NA	NA	16398	NM_008990	19294	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.030000	0.577114	
mm_118524.1	chr14	14743375	14743575	+	1	NA	NA	NA	40450	NM_001033270	218756	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.025000	0.492537	
mm_70621.1	chr8	13584069	13584269	+	1	NA	NA	NA	-21708	NM_001080781	66501	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.005000	0.512438	
mm_149602.1	chr19	16349430	16349630	+	1	NA	NA	NA	-34526	NR_105832	102465218		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.010000	0.393035	
mm_51588.1	chr6	83795151	83795351	+	1	NA	NA	NA	93	NM_001164187	56174	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	0.125000	0.691542	
mm_21108.1	chr2	153346303	153346503	-	1	NA	NA	NA	264	NM_001039939	228790	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0.130000	0.796020	
mm_111582.1	chr12	101819011	101819211	-	1	NA	NA	NA	8	NM_011812	23876	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	0.080000	0.696517	
mm_87996.1	chr10	66698189	66698389	+	1	NA	NA	NA	222095	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.015000	0.542289	
mm_49071.1	chr6	5725783	5725983	+	1	NA	NA	NA	244	NM_001191026	13426	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0.075000	0.646766	
mm_167293.1	chr8	46471614	46471814	+	1	NA	NA	NA	677	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.085000	0.601990	
mm_49172.1	chr6	14901287	14901487	+	1	NA	NA	NA	38	NM_053242	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.125000	0.636816	
mm_34030.1	chr4	138096664	138096864	+	1	NA	NA	NA	41754	NR_126429	73563	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	0.025000	0.492537	
mm_57967.1	chr6	135310280	135310480	-	1	NA	NA	NA	4	NM_029595	76400	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	0.050000	0.582090	
mm_35054.1	chr4	6355299	6355499	-	1	NA	NA	NA	-10281	NM_016807	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.005000	0.417910	
mm_95562.1	chr11	52360780	52360980	+	1	NA	NA	NA	18	NM_011694	22333	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.110000	0.686567	
mm_50736.1	chr6	52714326	52714526	+	1	NA	NA	NA	697	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.075000	0.562189	
mm_29111.1	chr3	104864335	104864535	-	1	NA	NA	NA	70	NM_009797	12340	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	0.095000	0.676617	
mm_65181.1	chr7	19696277	19696477	-	1	NA	NA	NA	2021	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.005000	0.537313	
mm_161546.1	chr16	5884821	5885021	+	1	NA	NA	NA	128	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.095000	0.656716	
mm_105555.1	chr11	106486793	106486993	-	1	NA	NA	NA	903	NM_023913	78943	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.040000	0.398010	
mm_68415.1	chr7	109671878	109672078	-	1	NA	NA	NA	-31759	NM_020616	57373	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	0.070000	0.696517	
mm_172984.1	chr9	98302028	98302228	+	1	NA	NA	NA	5545	NM_144533	74080	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	0.020000	0.447761	
mm_8473.1	chr1	153407687	153407887	-	1	NA	NA	NA	6446	NR_033736	626058	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0.030000	0.557214	-35(GAGTATATAAGC,-,0.00)
mm_40954.1	chr5	76858631	76858831	+	1	NA	NA	NA	18132	NM_001163793	320827	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.025000	0.601990	
mm_114719.1	chr13	83663734	83663934	+	1	NA	NA	NA	-64272	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.005000	0.328358	
mm_165077.1	chr19	46267737	46267937	+	1	NA	NA	NA	-36900	NM_001177369	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.010000	0.447761	
mm_124217.1	chr14	100242954	100243154	-	1	NA	NA	NA	-93258	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.000000	0.323383	
mm_40165.1	chr5	35757859	35758059	+	1	NA	NA	NA	79	NM_001177698	231148	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0.110000	0.751244	
mm_122702.1	chr14	52175183	52175383	-	1	NA	NA	NA	21956	NM_033618	114741	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	0.015000	0.457711	
mm_157334.1	chrX	36457028	36457228	-	1	NA	NA	NA	53651	NR_044989	621901	Mm.491051	NR_044989		Gm6268	EG621901	predicted gene 6268	ncRNA	0.010000	0.398010	
mm_151941.1	chr19	5800780	5800980	-	1	NA	NA	NA	1792	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.437811	
mm_18859.1	chr2	75690509	75690709	-	1	NA	NA	NA	14054	NR_132727	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.000000	0.258706	
mm_145229.1	chr18	50128139	50128339	+	1	NA	NA	NA	38	NM_008292	15488	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.075000	0.621891	
mm_51754.1	chr6	87732476	87732676	+	1	NA	NA	NA	1707	NM_001159697	58229	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.025000	0.557214	
mm_18169.1	chr2	45104142	45104342	-	1	NA	NA	NA	6035	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.005000	0.358209	47(GTTTTTAAAGAA,+,0.00)
mm_152418.1	chr19	10671765	10671965	-	1	NA	NA	NA	6206	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.005000	0.537313	
mm_21078.1	chr2	152831185	152831385	-	1	NA	NA	NA	443	NM_009743	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.105000	0.771144	
mm_147414.1	chr18	45934215	45934415	-	1	NA	NA	NA	110945	NR_040342	107003	Mm.395148	NR_040342		A330093E20Rik	AU043608	RIKEN cDNA A330093E20 gene	ncRNA	0.005000	0.348259	
mm_85150.1	chr9	95959276	95959476	-	1	NA	NA	NA	4616	NM_001311130	24127	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	0.025000	0.547264	
mm_99979.1	chr11	114251782	114251982	+	1	NA	NA	NA	53624	NR_045930	73536	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.015000	0.467662	
mm_101868.1	chr11	48891574	48891774	-	1	NA	NA	NA	10478	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.000000	0.437811	-21(CACTATAAAGGG,-,0.00)
mm_11181.1	chr2	28840529	28840729	+	1	NA	NA	NA	223	NM_001033294	227674	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	0.105000	0.681592	
mm_101030.1	chr11	8579754	8579954	-	1	NA	NA	NA	84681	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.020000	0.517413	
mm_145179.1	chr18	47154938	47155138	+	1	NA	NA	NA	196162	NM_178377	69456	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2	COMM domain containing 10	protein-coding	0.005000	0.398010	
mm_144294.1	chr18	12168651	12168851	+	1	NA	NA	NA	21	NM_029623	76482	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1	RIKEN cDNA 3110002H16 gene	protein-coding	0.120000	0.726368	
mm_121840.1	chr14	20571108	20571308	-	1	NA	NA	NA	-24635	NM_008914	19056	Mm.274432	NM_008914	ENSMUSG00000021816	Ppp3cb	1110063J16Rik|Calnb|CnAbeta|Cnab	protein phosphatase 3, catalytic subunit, beta isoform	protein-coding	0.005000	0.318408	
mm_118829.1	chr14	25607258	25607458	+	1	NA	NA	NA	3845	NM_001309430	100188919	Mm.473810	NM_001309430		Israa	-	immune system released activating agent	protein-coding	0.090000	0.681592	
mm_95601.1	chr11	53350939	53351139	+	1	NA	NA	NA	272	NM_033565	93736	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.150000	0.776119	
mm_38820.1	chr4	148626921	148627121	-	1	NA	NA	NA	-25	NM_001003899	230908	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	0.110000	0.631841	
mm_2762.1	chr1	130464010	130464210	+	1	NA	NA	NA	-1366	NM_010016	13136	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0.015000	0.437811	-33(CAGTATTTAAGG,-,0.00)
mm_80885.1	chr9	99243612	99243812	+	1	NA	NA	NA	244	NM_023873	68121	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	0.075000	0.631841	
mm_125602.1	chr15	60112053	60112253	+	1	NA	NA	NA	-95535	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.010000	0.447761	
mm_18221.1	chr2	50297113	50297313	-	1	NA	NA	NA	403	NR_040362	100502624	Mm.382825	NR_040361	ENSMUSG00000085862	Gm13483	OTTMUSG00000012382	predicted gene 13483	ncRNA	0.025000	0.517413	
mm_135393.1	chr16	44333046	44333246	-	1	NA	NA	NA	-308	NM_001159419	320007	Mm.242144	NM_198034	ENSMUSG00000022696	Sidt1	AW045928|B830021E24Rik	SID1 transmembrane family, member 1	protein-coding	0.035000	0.467662	
mm_144503.1	chr18	24603862	24604062	+	1	NA	NA	NA	1	NM_021448	58523	Mm.25298	NM_021448	ENSMUSG00000024271	Elp2	AU023723|Epl2|StIP1|Statip1	elongator acetyltransferase complex subunit 2	protein-coding	0.085000	0.611940	
mm_125842.1	chr15	74958719	74958919	+	1	NA	NA	NA	3713	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.005000	0.557214	-55(CCTTTTAGGTCC,+,0.00)
mm_166021.1	chr4	122995520	122995720	+	1	NA	NA	NA	-311	NM_001303121	16918	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	0.070000	0.651741	
mm_165362.1	chr2	124174332	124174532	+	1	NA	NA	NA	-44476	NR_040611	74702	Mm.410814	NR_040611	ENSMUSG00000085496	4930517E11Rik	-	RIKEN cDNA 4930517E11 gene	ncRNA	0.000000	0.338308	74(CTTTTTAAAAAG,+,0.00),74(CTTTTTAAAAAG,-,0.00)
mm_90438.1	chr10	127642995	127643195	+	1	NA	NA	NA	109	NM_009284	20852	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.070000	0.597015	54(GTTTTTAGGGCC,+,0.00)
mm_167991.1	chrX	170009630	170009830	+	1	NA	NA	NA	-30813	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.150000	0.766169	
mm_150056.1	chr19	29383206	29383406	+	1	NA	NA	NA	15868	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.333333	-51(CTGTCTAAAAAG,-,0.00)
mm_125944.1	chr15	76248359	76248559	+	1	NA	NA	NA	268	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.020000	0.577114	
mm_143838.1	chr17	84121464	84121664	-	1	NA	NA	NA	42904	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.025000	0.557214	
mm_20484.1	chr2	129801352	129801552	-	1	NA	NA	NA	7	NR_029452	654409	Mm.305555	NR_029452		4932416H05Rik	-	RIKEN cDNA 4932416H05 gene	ncRNA	0.075000	0.646766	
mm_16000.1	chr2	167349595	167349795	+	1	NA	NA	NA	-517	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.115000	0.711443	
mm_12366.1	chr2	69790871	69791071	+	1	NA	NA	NA	1234	NM_028521	73373	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	0.005000	0.298507	
mm_56267.1	chr6	90988561	90988761	-	1	NA	NA	NA	128165	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.130000	0.751244	
mm_31931.1	chr4	86053837	86054037	+	1	NA	NA	NA	22	NM_029967	77739	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	0.025000	0.587065	
mm_2600.1	chr1	120006952	120007152	+	1	NA	NA	NA	72	NM_001311077	319229	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	0.025000	0.606965	
mm_165354.1	chr2	121358783	121358983	+	1	NA	NA	NA	242	NM_009897	12716	Mm.252145	NM_009897	ENSMUSG00000000308	Ckmt1	Mt-CK|ScCKmit|UbCKmit|mi-CK	creatine kinase, mitochondrial 1, ubiquitous	protein-coding	0.050000	0.621891	
mm_45967.1	chr5	90468466	90468666	-	1	NA	NA	NA	7696	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.482587	
mm_129887.1	chr15	83489543	83489743	-	1	NA	NA	NA	21264	NM_178869	319953	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0.085000	0.552239	
mm_65290.1	chr7	24445599	24445799	-	1	NA	NA	NA	-17	NM_199013	210145	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.005000	0.587065	
mm_16842.1	chr2	11501975	11502175	-	1	NA	NA	NA	15	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.075000	0.646766	1(GATCTTAAAAGG,-,0.00),3(TCTTAAAAGGCC,+,0.00)
mm_152968.1	chr19	29384345	29384545	-	1	NA	NA	NA	17007	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.020000	0.487562	
mm_25648.1	chr3	121426472	121426672	+	1	NA	NA	NA	31	NM_028044	71994	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0.125000	0.741294	
mm_162254.1	chrX	167855036	167855236	-	1	NA	NA	NA	-59	NM_001290428	333605	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	0.015000	0.472637	
mm_62739.1	chr7	111028867	111029067	+	1	NA	NA	NA	16	NM_009431	22083	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0.090000	0.661692	
mm_29973.1	chr3	133544558	133544758	-	1	NA	NA	NA	-268	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.165000	0.810945	
mm_136900.1	chr17	13015072	13015272	+	1	NA	NA	NA	7333	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.015000	0.442786	-96(CAGTATAAAAAC,-,0.00)
mm_86687.1	chr10	18431082	18431282	+	1	NA	NA	NA	23507	NM_173390	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.040000	0.616915	
mm_64395.1	chr7	142494152	142494352	+	1	NA	NA	NA	-4584	NM_001347549	21957	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	0.015000	0.572139	
mm_50914.1	chr6	57582759	57582959	+	1	NA	NA	NA	1867	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.000000	0.328358	
mm_106332.1	chr11	118355226	118355426	-	1	NA	NA	NA	85	NM_011594	21858	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0.105000	0.716418	
mm_159538.1	chr4	88522639	88522839	-	1	NA	NA	NA	55	NM_010510	15977	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	0.025000	0.552239	
mm_8374.1	chr1	150993336	150993536	-	1	NA	NA	NA	-1	NM_001024720	545370	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.105000	0.726368	
mm_101180.1	chr11	16999624	16999824	-	1	NA	NA	NA	8994	NM_019549	56193	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.025000	0.442786	-7(TTTTTTAAAGTC,+,0.00)
mm_42686.1	chr5	119832609	119832809	+	1	NA	NA	NA	-1954	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.045000	0.487562	84(TCGTTTTAAAGG,-,0.00),85(CGTTTTAAAGGG,-,0.00),86(GTTTTAAAGGGG,+,0.00)
mm_60215.1	chr7	43463123	43463323	+	1	NA	NA	NA	-10	NM_001290316	75690	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.005000	0.582090	
mm_81157.1	chr9	107295832	107296032	+	1	NA	NA	NA	-727	NM_001317354	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.005000	0.472637	
mm_53244.1	chr6	127561258	127561458	+	1	NA	NA	NA	-16617	NM_001033464	381812	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0.080000	0.671642	
mm_142996.1	chr17	56388235	56388435	-	1	NA	NA	NA	30574	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0.010000	0.567164	
mm_113189.1	chr13	24942639	24942839	+	1	NA	NA	NA	-413	NM_008156	14756	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0.035000	0.512438	
mm_793.1	chr1	45345748	45345948	+	1	NA	NA	NA	34310	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.005000	0.502488	
mm_47312.1	chr5	122458427	122458627	-	1	NA	NA	NA	36083	NM_019805	56317	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0.030000	0.507463	-80(CTTTTTAGACCA,+,0.00)
mm_163028.1	chr11	50131337	50131537	+	1	NA	NA	NA	77	NM_029745	76795	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.155000	0.771144	
mm_129910.1	chr15	84105568	84105768	-	1	NA	NA	NA	86	NM_013873	29859	Mm.248796	NM_013873	ENSMUSG00000018865	Sult4a1	2400007A17Rik|AI853543|BR-STL-1|ST4A1|Sultx3	sulfotransferase family 4A, member 1	protein-coding	0.165000	0.771144	
mm_147309.1	chr18	40923673	40923873	-	1	NA	NA	NA	665412	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.000000	0.233831	
mm_159154.1	chr2	89002048	89002248	-	1	NA	NA	NA	142	NM_146459	258451	Mm.271379	NM_146459	ENSMUSG00000100016	Olfr1215	MOR233-13	olfactory receptor 1215	protein-coding	0.010000	0.417910	
mm_121010.1	chr14	79535456	79535656	+	1	NA	NA	NA	19882	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.045000	0.492537	
mm_36874.1	chr4	107177632	107177832	-	1	NA	NA	NA	634	NM_025617	66526	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0.030000	0.412935	
mm_136737.1	chr17	8340329	8340529	+	1	NA	NA	NA	23	NR_028280	320111	Mm.442510	NM_178774	ENSMUSG00000055945	Prr18	9630019K15Rik	proline rich 18	protein-coding	0.035000	0.527363	
mm_90828.1	chr10	7956147	7956347	-	1	NA	NA	NA	-124	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.135000	0.746269	
mm_15867.1	chr2	164833747	164833947	+	1	NA	NA	NA	74	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.060000	0.592040	
mm_151895.1	chr19	5798831	5799031	-	1	NA	NA	NA	-2950	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.030000	0.467662	
mm_139052.1	chr17	46297828	46298028	+	1	NA	NA	NA	0	NM_001286013	106565	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta-like 2 homolog (Drosophila)	protein-coding	0.130000	0.800995	
mm_77542.1	chr8	123158147	123158347	-	1	NA	NA	NA	33	NM_020564	57429	Mm.6562	NM_020564	ENSMUSG00000000739	Sult5a1	Sult-x1|Sultx1	sulfotransferase family 5A, member 1	protein-coding	0.025000	0.626866	
mm_172995.1	chrM	1328	1528	+	1	NA	NA	NA	NA	NA									0.020000	0.328358	
mm_155452.1	chrX	73495490	73495690	+	1	NA	NA	NA	-7496	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.005000	0.537313	
mm_78906.1	chr9	44772902	44773102	+	1	NA	NA	NA	-7	NM_023831	76568	Mm.278597	NM_023831	ENSMUSG00000002031	Ift46	1500035H01Rik|AA408110|AI663846|R75047|c11orf2	intraflagellar transport 46	protein-coding	0.095000	0.611940	
mm_76993.1	chr8	107065564	107065764	-	1	NA	NA	NA	-20	NM_025458	66269	Mm.23032	NM_025458	ENSMUSG00000031919	Tmed6	1810015P03Rik|1810018I24Rik	transmembrane p24 trafficking protein 6	protein-coding	0.020000	0.527363	
mm_61341.1	chr7	68279122	68279322	+	1	NA	NA	NA	-2628	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.015000	0.562189	
mm_12051.1	chr2	59162145	59162345	+	1	NA	NA	NA	1395	NM_175464	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.015000	0.383085	
mm_147865.1	chr18	64345713	64345913	-	1	NA	NA	NA	5449	NM_194268	225631	Mm.234723	NM_194268	ENSMUSG00000045991	Onecut2	C730009D12|OC-2|Oc2	one cut domain, family member 2	protein-coding	0.055000	0.527363	
mm_114438.1	chr13	65950475	65950675	+	1	NA	NA	NA	-162878	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.015000	0.532338	
mm_104318.1	chr11	93955568	93955768	-	1	NA	NA	NA	115	NM_001077529	18103	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	0.080000	0.651741	
mm_139143.1	chr17	47511800	47512000	+	1	NA	NA	NA	6849	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.020000	0.547264	
mm_160411.1	chr8	73352616	73352816	-	1	NA	NA	NA	824	NM_001317391	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.060000	0.641791	
mm_136705.1	chr17	7878075	7878275	+	1	NA	NA	NA	-47825	NM_145968	72536	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik	T cell activation Rho GTPase activating protein	protein-coding	0.005000	0.557214	
mm_23751.1	chr3	69553263	69553463	+	1	NA	NA	NA	45597	NM_020026	26879	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0.010000	0.517413	
mm_69427.1	chr7	132813048	132813248	-	1	NA	NA	NA	48	NM_212473	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.085000	0.631841	
mm_53064.1	chr6	124914016	124914216	+	1	NA	NA	NA	-2411	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.025000	0.626866	
mm_60133.1	chr7	37369123	37369323	+	1	NA	NA	NA	400529	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.010000	0.492537	
mm_41963.1	chr5	106964251	106964451	+	1	NA	NA	NA	29	NM_009863	12545	Mm.20842	NM_009863	ENSMUSG00000029283	Cdc7	AI597260|Cdc7l1|muCdc7	cell division cycle 7 (S. cerevisiae)	protein-coding	0.115000	0.626866	
mm_15403.1	chr2	156730869	156731069	+	1	NA	NA	NA	9690	NM_001042487	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.030000	0.572139	-19(CCTTTTAAACAC,+,0.00)
mm_64607.1	chr7	3249566	3249766	-	1	NA	NA	NA	74	NM_001033431	378425	Mm.277152	NM_001033431	ENSMUSG00000078817	Nlrp12	Nalp12|PYPAF7	NLR family, pyrin domain containing 12	protein-coding	0.010000	0.447761	80(CCTTTTAGAGAG,+,0.00)
mm_136109.1	chr16	85456681	85456881	-	1	NA	NA	NA	93592	NM_144853	224405	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding	0.000000	0.427861	
mm_173089.1	chrX	150529981	150530181	+	1	NA	NA	NA	-17336	NM_009653	11656	Mm.302724	NM_009653	ENSMUSG00000025270	Alas2	ALAS|ALAS-E|ALASE|Alas-2	aminolevulinic acid synthase 2, erythroid	protein-coding	0.095000	0.696517	
mm_54439.1	chr6	34415321	34415521	-	1	NA	NA	NA	3059	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.025000	0.497512	
mm_101699.1	chr11	40753805	40754005	-	1	NA	NA	NA	1381	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.020000	0.422886	
mm_53580.1	chr6	137410964	137411164	+	1	NA	NA	NA	343	NM_001164403	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.025000	0.477612	
mm_126633.1	chr15	83526764	83526964	+	1	NA	NA	NA	2	NM_007546	12124	Mm.267006	NM_007546	ENSMUSG00000016758	Bik	Biklk|Blk|Nbk	BCL2-interacting killer	protein-coding	0.100000	0.701493	
mm_85328.1	chr9	102304420	102304620	-	1	NA	NA	NA	455	NR_106163	102466241		NR_106163	ENSMUSG00000098521	Mir7243	Gm27363|mmu-mir-7243	microRNA 7243	ncRNA	0.030000	0.472637	
mm_116423.1	chr13	41828331	41828531	-	1	NA	NA	NA	19057	NM_175417	109254	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.015000	0.517413	
mm_169295.1	chr1	40458287	40458487	-	1	NA	NA	NA	-7165	NM_001161842	16182	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0.055000	0.567164	
mm_161276.1	chr14	14328063	14328263	+	1	NA	NA	NA	50	NM_147027	18330	Mm.484338	NM_147027	ENSMUSG00000072707	Olfr31	MOR274-1|MTPCR53	olfactory receptor 31	protein-coding	0.015000	0.432836	
mm_128659.1	chr15	60016506	60016706	-	1	NA	NA	NA	12	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.030000	0.517413	
mm_15535.1	chr2	158382991	158383191	+	1	NA	NA	NA	7453	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.025000	0.422886	
mm_18892.1	chr2	76710636	76710836	-	1	NA	NA	NA	35421	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.045000	0.562189	
mm_125743.1	chr15	73723027	73723227	+	1	NA	NA	NA	-18	NM_001166390	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.015000	0.537313	
mm_73180.1	chr8	95058943	95059143	+	1	NA	NA	NA	3940	NM_001042715	330830	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.030000	0.572139	
mm_114865.1	chr13	93771624	93771824	+	1	NA	NA	NA	45	NM_009712	11881	Mm.300178	NM_009712	ENSMUSG00000042082	Arsb	1110007C02Rik|AI480648|As-1|As-1r|As-1s|As-1t|As1|As1-r|As1-s|As1-t|Asr-1|Ast-1	arylsulfatase B	protein-coding	0.090000	0.736318	
mm_49575.1	chr6	30641449	30641649	+	1	NA	NA	NA	2331	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.015000	0.547264	
mm_156126.1	chrX	116727492	116727692	+	1	NA	NA	NA	46414	NM_001281530	624153		NM_001281530	ENSMUSG00000082482	H2afb2	EG624153|H2A.Bbd4|H2afb2-ps	H2A histone family, member B2	protein-coding	0.000000	0.373134	
mm_1634.1	chr1	74506242	74506442	+	1	NA	NA	NA	282	NM_021383	58184	Mm.291708	NM_021383	ENSMUSG00000026174	Cnot9	2610007F23Rik|AI593551|Fl10|Rqcd1	CCR4-NOT transcription complex, subunit 9	protein-coding	0.105000	0.706468	
mm_104922.1	chr11	99858632	99858832	-	1	NA	NA	NA	815	NM_001205030	432600	Mm.60039	NM_001205030	ENSMUSG00000069717	Gm11568	OTTMUSG00000002207	predicted gene 11568	protein-coding	0.010000	0.388060	
mm_167566.1	chr9	42120349	42120549	+	1	NA	NA	NA	3840	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.025000	0.502488	
mm_147856.1	chr18	63692326	63692526	-	1	NA	NA	NA	-67	NM_016792	53382	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.125000	0.731343	
mm_84825.1	chr9	78108472	78108672	-	1	NA	NA	NA	84	NM_023605	71538	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	0.160000	0.761194	
mm_83553.1	chr9	46242487	46242687	-	1	NA	NA	NA	1743	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.020000	0.512438	
mm_108896.1	chr12	100184138	100184338	+	1	NA	NA	NA	-3730	NR_045282	100038378	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	ENSMUSG00000072884	predicted gene 10433	ncRNA	0.015000	0.497512	-29(CCTTATAAAAGA,+,0.00),-29(CCTTATAAAAGA,-,0.00)
mm_170334.1	chr18	45071170	45071370	-	1	NA	NA	NA	-197590	NM_001312905	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.035000	0.527363	73(TGCCATAAAGGA,-,0.00)
mm_160706.1	chr10	52545609	52545809	-	1	NA	NA	NA	30	NR_037920	22639	Mm.490597	NM_009540	ENSMUSG00000049576	Zfa-ps	Zfa|Zfx	zinc finger protein, autosomal, pseudogene	pseudo	0.070000	0.671642	
mm_4338.1	chr1	171856053	171856253	+	1	NA	NA	NA	16456	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.015000	0.447761	
mm_51166.1	chr6	70726420	70726620	+	1	NA	NA	NA	65655	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.492537	
mm_119833.1	chr14	54367775	54367975	+	1	NA	NA	NA	7034	NM_026936	69089	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	0.035000	0.542289	
mm_87072.1	chr10	29147144	29147344	+	1	NA	NA	NA	3248	NM_026138	67412	Mm.390264	NM_026138	ENSMUSG00000038916	Soga3	6330407J23Rik	SOGA family member 3	protein-coding	0.100000	0.746269	
mm_1387.1	chr1	67109067	67109267	+	1	NA	NA	NA	-13860	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.000000	0.398010	
mm_126634.1	chr15	83526802	83527002	+	1	NA	NA	NA	40	NM_007546	12124	Mm.267006	NM_007546	ENSMUSG00000016758	Bik	Biklk|Blk|Nbk	BCL2-interacting killer	protein-coding	0.090000	0.676617	
mm_59254.1	chr7	24862129	24862329	+	1	NA	NA	NA	7462	NM_182785	232973	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	0.035000	0.482587	
mm_164997.1	chr19	18670845	18671045	+	1	NA	NA	NA	165	NM_026120	67383	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	0.185000	0.805970	
mm_104358.1	chr11	94303838	94304038	-	1	NA	NA	NA	17973	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.030000	0.373134	
mm_80060.1	chr9	69397855	69398055	+	1	NA	NA	NA	-43	NM_145618	93697	Mm.35911	NM_145618	ENSMUSG00000032235	Ice2	B230343B06Rik|Narg2	interactor of little elongation complex ELL subunit 2	protein-coding	0.120000	0.661692	-5(GCTTTTAAATGA,+,0.00)
mm_94932.1	chr11	29692940	29693140	+	1	NA	NA	NA	142	NM_194052	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.080000	0.671642	
mm_133668.1	chr16	92074902	92075102	+	1	NA	NA	NA	16666	NM_080456	121022	Mm.217354	NM_080456	ENSMUSG00000039680	Mrps6	AW046321	mitochondrial ribosomal protein S6	protein-coding	0.000000	0.303483	
mm_26137.1	chr3	137918390	137918590	+	1	NA	NA	NA	-65	NM_019920	56692	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0.105000	0.646766	
mm_115956.1	chr13	23761113	23761313	-	1	NA	NA	NA	36	NM_178192	326619	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	0.065000	0.557214	0(AGCTATATAAAG,-,0.00)
mm_46884.1	chr5	113951961	113952161	-	1	NA	NA	NA	41696	NM_198109	231637	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot homolog 1 (Drosophila)	protein-coding	0.015000	0.437811	
mm_38561.1	chr4	141663910	141664110	-	1	NA	NA	NA	105	NM_001347237	69582	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	0.215000	0.870647	
mm_7066.1	chr1	87626349	87626549	-	1	NA	NA	NA	6137	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.005000	0.472637	27(AGCTCTAAAAAC,-,0.00)
mm_61015.1	chr7	49372128	49372328	+	1	NA	NA	NA	126039	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.015000	0.497512	
mm_40481.1	chr5	54053838	54054038	+	1	NA	NA	NA	55415	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.030000	0.527363	
mm_27846.1	chr3	79156480	79156680	-	1	NA	NA	NA	-10705	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.015000	0.283582	
mm_50712.1	chr6	52172849	52173049	+	1	NA	NA	NA	7275	NR_131182	105242657	Mm.490651	NR_131182	ENSMUSG00000056445	Hoxaas2	2810043O09Rik|5730446D14Rik	Hoxa cluster antisense RNA 2	ncRNA	0.040000	0.512438	-100(AGCCATAAAAGA,-,0.00),-34(CACTATAAAAAG,-,0.00)
mm_45813.1	chr5	87674138	87674338	-	1	NA	NA	NA	8030	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.328358	
mm_74874.1	chr8	25038798	25038998	-	1	NA	NA	NA	64	NM_001081187	330723	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0.035000	0.547264	-56(ACCTTTATAAAG,-,0.00),-54(CTTTATAAAGTC,+,0.00)
mm_56452.1	chr6	97818129	97818329	-	1	NA	NA	NA	11171	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.020000	0.457711	62(TCCTCTTAAAAG,-,0.00)
mm_97023.1	chr11	71750958	71751158	+	1	NA	NA	NA	355	NM_177618	216881	Mm.48648	NM_177618	ENSMUSG00000020811	Wscd1	mKIAA0523	WSC domain containing 1	protein-coding	0.160000	0.776119	
mm_18408.1	chr2	60383211	60383411	-	1	NA	NA	NA	-80	NM_013825	17076	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	0.095000	0.726368	
mm_140653.1	chr17	12715925	12716125	-	1	NA	NA	NA	-25286	NR_002853	104103	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.020000	0.477612	
mm_109016.1	chr12	103434148	103434348	+	1	NA	NA	NA	59	NM_194069	52668	Mm.2121	NM_026790	ENSMUSG00000064215	Ifi27	1110013J02Rik|2900026P10Rik|D12Ertd647e|ISG12a|Ifi27l1	interferon, alpha-inducible protein 27	protein-coding	0.020000	0.477612	
mm_74830.1	chr8	23191475	23191675	-	1	NA	NA	NA	16878	NM_018743	102247	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	0.020000	0.577114	
mm_16377.1	chr2	178192987	178193187	+	1	NA	NA	NA	3	NM_001007154	74189	Mm.44413	NM_028806	ENSMUSG00000027525	Phactr3	1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224	phosphatase and actin regulator 3	protein-coding	0.025000	0.606965	
mm_151958.1	chr19	5801332	5801532	-	1	NA	NA	NA	1240	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.383085	21(GCTTTTAAAATC,+,0.00),22(CTTTTAAAATCC,+,0.00)
mm_32743.1	chr4	116637711	116637911	+	1	NA	NA	NA	-9860	NM_016777	50927	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.010000	0.432836	-75(GACTCTAAATGG,-,0.00)
mm_53960.1	chr6	5495778	5495978	-	1	NA	NA	NA	400	NM_013743	27273	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.020000	0.452736	
mm_111193.1	chr12	84193686	84193886	-	1	NA	NA	NA	229	NM_001163502	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.090000	0.646766	
mm_68130.1	chr7	102210078	102210278	-	1	NA	NA	NA	-12	NM_001287164	269966	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	0.145000	0.691542	
mm_127153.1	chr15	98570917	98571117	+	1	NA	NA	NA	13	NM_001201322	73863	Mm.66894	NM_001201322	ENSMUSG00000022993	4930415O20Rik	-	RIKEN cDNA 4930415O20 gene	protein-coding	0.010000	0.427861	
mm_169156.1	chr13	63793591	63793791	+	1	NA	NA	NA	-21629	NM_001013608	76251	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	0.015000	0.368159	
mm_21198.1	chr2	155473712	155473912	-	1	NA	NA	NA	-33029	NM_019825	56406	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	0.135000	0.830846	
mm_70631.1	chr8	13771278	13771478	+	1	NA	NA	NA	13688	NM_027276	69957	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	0.015000	0.457711	
mm_56059.1	chr6	86774985	86775185	-	1	NA	NA	NA	29	NM_001331120	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.020000	0.472637	
mm_16930.1	chr2	13793816	13794016	-	1	NA	NA	NA	-396	NM_145838	241230	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	0.065000	0.626866	
mm_86695.1	chr10	18469807	18470007	+	1	NA	NA	NA	-74	NM_001163592	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.025000	0.497512	
mm_6163.1	chr1	65061796	65061996	-	1	NA	NA	NA	1544	NM_007776	12967	Mm.425031	NM_007776	ENSMUSG00000067299	Crygd	Aey4|Cryg-1|DGcry-1|Lop12	crystallin, gamma D	protein-coding	0.025000	0.447761	
mm_60823.1	chr7	45705349	45705549	+	1	NA	NA	NA	202	NM_016974	13170	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.055000	0.577114	
mm_54101.1	chr6	16855875	16856075	-	1	NA	NA	NA	42466	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.010000	0.402985	
mm_169011.1	chr13	107121873	107122073	+	1	NA	NA	NA	99403	NR_015471	100040322	Mm.133867	NR_015471		3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.070000	0.537313	3(AACTTTAAATGG,-,0.00)
mm_96505.1	chr11	68447468	68447668	+	1	NA	NA	NA	15443	NM_177320	320207	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik	phosphoinositide-3-kinase, regulatory subunit 5, p101	protein-coding	0.000000	0.437811	
mm_140058.1	chr17	74665673	74665873	+	1	NA	NA	NA	-51977	NM_152817	74196	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0.000000	0.393035	30(GTATTAATAGCC,+,0.00),56(CCTTATAAGAAG,+,0.00)
mm_94796.1	chr11	22972883	22973083	+	1	NA	NA	NA	978	NM_011663	22183	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.050000	0.562189	
mm_145298.1	chr18	53297210	53297410	+	1	NA	NA	NA	51648	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.005000	0.343284	
mm_68347.1	chr7	106506911	106507111	-	1	NA	NA	NA	-65938	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.432836	
mm_164572.1	chr17	23669910	23670110	-	1	NA	NA	NA	-3598	NM_181821	353502	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	0.025000	0.616915	
mm_39535.1	chr5	21376394	21376594	+	1	NA	NA	NA	3821	NM_008013	14190	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.000000	0.353234	
mm_17604.1	chr2	30897408	30897608	-	1	NA	NA	NA	5789	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.010000	0.582090	
mm_33826.1	chr4	135495898	135496098	+	1	NA	NA	NA	11	NM_030189	78806	Mm.374844	NM_030189	ENSMUSG00000028801	Stpg1	4930403G18Rik|4930555I21Rik|Mapo2	sperm tail PG rich repeat containing 1	protein-coding	0.060000	0.587065	
mm_63045.1	chr7	121734361	121734561	+	1	NA	NA	NA	-18	NM_011326	20278	Mm.35247	NM_011326	ENSMUSG00000000216	Scnn1g	SCNEG	sodium channel, nonvoltage-gated 1 gamma	protein-coding	0.045000	0.606965	8(GGCTTTATGAGG,-,0.00)
mm_49030.1	chr6	4759675	4759875	+	1	NA	NA	NA	12469	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.000000	0.308458	
mm_127173.1	chr15	98870931	98871131	+	1	NA	NA	NA	174	NM_001033276	381022	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.060000	0.666667	-53(CCCTTTCTGGGC,+,0.00)
mm_84212.1	chr9	61372099	61372299	-	1	NA	NA	NA	-167	NM_001083928	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.060000	0.502488	
mm_39491.1	chr5	20950889	20951089	+	1	NA	NA	NA	0	NR_030699	320770	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.055000	0.497512	18(ATCTTTAAAAGA,-,0.00),19(TCTTTAAAAGAC,+,0.00)
mm_107663.1	chr12	52854556	52854756	+	1	NA	NA	NA	155273	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.015000	0.492537	
mm_7060.1	chr1	87510189	87510389	-	1	NA	NA	NA	73	NM_019867	53972	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	0.125000	0.771144	
mm_89102.1	chr10	84556362	84556562	+	1	NA	NA	NA	-3124	NR_040658	442847	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	0.005000	0.348259	-35(TTCTTTTAAAAG,-,0.00),-33(CTTTTAAAAGAA,+,0.00)
mm_124828.1	chr15	9092141	9092341	+	1	NA	NA	NA	20981	NM_001040395	68646	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.005000	0.343284	
mm_137033.1	chr17	17890250	17890450	+	1	NA	NA	NA	2526	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.000000	0.343284	
mm_85946.1	chr9	112107949	112108149	-	1	NA	NA	NA	10662	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.000000	0.442786	
mm_79319.1	chr9	52115044	52115244	+	1	NA	NA	NA	-479	NR_105750	102465150		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	0.005000	0.323383	-64(GCATATAAACCC,+,0.00),29(AGCTTTAAAAAG,-,0.00),30(GCTTTAAAAAGG,+,0.00),31(CTTTAAAAAGGA,+,0.00)
mm_157962.1	chrX	88760135	88760335	-	1	NA	NA	NA	-682	NR_037313	100499530		NR_037313	ENSMUSG00000084559	Mir1906-2	mmu-mir-1906-2	microRNA 1906-2	ncRNA	0.035000	0.537313	
mm_17395.1	chr2	27142316	27142516	-	1	NA	NA	NA	61	NM_175427	109349	Mm.314080	NM_175427	ENSMUSG00000009216	Fam163b	C630035N08Rik	family with sequence similarity 163, member B	protein-coding	0.115000	0.736318	
mm_122503.1	chr14	46822052	46822252	-	1	NA	NA	NA	90	NM_022023	63985	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	0.110000	0.666667	-7(TCTTAAAGGGGC,+,0.00)
mm_58227.1	chr6	144630430	144630630	-	1	NA	NA	NA	-42338	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA	0.010000	0.393035	
mm_115815.1	chr13	19732708	19732908	-	1	NA	NA	NA	143	NM_175688	319293	Mm.246657	NM_175688	ENSMUSG00000047462	A530099J19Rik	-	RIKEN cDNA A530099J19 gene	protein-coding	0.020000	0.497512	
mm_72263.1	chr8	75097101	75097301	+	1	NA	NA	NA	3583	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.030000	0.557214	
mm_81150.1	chr9	106892363	106892563	+	1	NA	NA	NA	-525	NM_029103	74840	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	0.080000	0.582090	13(CCTCTTAAACGA,+,0.00)
mm_57699.1	chr6	128525186	128525386	-	1	NA	NA	NA	1434	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.020000	0.457711	29(TCCCTGAAAAGG,-,0.00)
mm_41128.1	chr5	87786553	87786753	+	1	NA	NA	NA	12203	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.005000	0.383085	
mm_124796.1	chr15	8225164	8225364	+	1	NA	NA	NA	56158	NM_001162906	73692	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0.035000	0.462687	-33(CGCTATTAGAGG,-,0.00)
mm_106561.1	chr11	120630472	120630672	-	1	NA	NA	NA	2975	NM_010756	17134	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.015000	0.582090	
mm_73633.1	chr8	110721590	110721790	+	1	NA	NA	NA	214	NM_198625	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.145000	0.781095	
mm_64144.1	chr7	141228690	141228890	+	1	NA	NA	NA	2	NM_001081118	101471	Mm.248656	NM_207211	ENSMUSG00000038611	Phrf1	AA673488	PHD and ring finger domains 1	protein-coding	0.135000	0.671642	
mm_132344.1	chr16	33883558	33883758	+	1	NA	NA	NA	53993	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.005000	0.517413	
mm_60158.1	chr7	39544336	39544536	+	1	NA	NA	NA	26670	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.075000	0.646766	
mm_61218.1	chr7	64392626	64392826	+	1	NA	NA	NA	-45	NM_028626	73724	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	0.075000	0.661692	
mm_22363.1	chr2	181039203	181039403	-	1	NA	NA	NA	-126	NM_015730	11438	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	0.105000	0.766169	
mm_18731.1	chr2	72979535	72979735	-	1	NA	NA	NA	203	NR_045269	100503849	Mm.389285	NM_183265		Sp3os	1700011J10Rik	trans-acting transcription factor 3, opposite strand	ncRNA	0.095000	0.711443	
mm_79946.1	chr9	66004571	66004771	+	1	NA	NA	NA	-55498	NM_011149	19035	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	0.015000	0.462687	-47(AGATATAAAAGC,-,0.00)
mm_73619.1	chr8	110217876	110218076	+	1	NA	NA	NA	16	NM_146215	234728	Mm.275341	NM_146215	ENSMUSG00000046441	Cmtr2	AU022703|C730036L12Rik|Ftsjd1|MTr2	cap methyltransferase 2	protein-coding	0.090000	0.671642	
mm_88031.1	chr10	67285360	67285560	+	1	NA	NA	NA	-179	NM_001036293	641340	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.070000	0.636816	
mm_24003.1	chr3	87290246	87290446	+	1	NA	NA	NA	-26822	NM_030707	80891	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	0.015000	0.398010	
mm_17658.1	chr2	32065325	32065525	-	1	NA	NA	NA	14479	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	0.010000	0.512438	
mm_36244.1	chr4	63381134	63381334	-	1	NA	NA	NA	17006	NM_001305432	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.010000	0.517413	
mm_118886.1	chr14	26565646	26565846	+	1	NA	NA	NA	-8112	NM_001285467	211922	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	0.035000	0.487562	
mm_100996.1	chr11	8468355	8468555	-	1	NA	NA	NA	196080	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.025000	0.616915	
mm_50200.1	chr6	42039975	42040175	+	1	NA	NA	NA	1681	NM_009299	20939	Mm.4119	NM_009299	ENSMUSG00000023289	Sva	-	seminal vesicle antigen	protein-coding	0.015000	0.373134	
mm_118625.1	chr14	21182569	21182769	+	1	NA	NA	NA	106517	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.015000	0.452736	9(ATCTATAAAGGC,-,0.00)
mm_39221.1	chr4	156199497	156199697	-	1	NA	NA	NA	1221	NM_015783	100038882	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	0.005000	0.567164	37(GGTTATAAAAGA,-,0.00)
mm_156423.1	chrX	140923101	140923301	+	1	NA	NA	NA	12	NM_026103	78789	Mm.244932	NM_026103	ENSMUSG00000031430	Vsig1	1700062D20Rik|4930405J24Rik	V-set and immunoglobulin domain containing 1	protein-coding	0.000000	0.467662	
mm_67678.1	chr7	89328626	89328826	-	1	NA	NA	NA	10061	NM_028343	72759	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.000000	0.422886	
mm_163883.1	chr14	22019543	22019743	+	1	NA	NA	NA	-69	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.075000	0.661692	
mm_106653.1	chr11	121086397	121086597	-	1	NA	NA	NA	-5358	NM_145373	209588	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	0.020000	0.457711	
mm_50065.1	chr6	41188301	41188501	+	1	NA	NA	NA	-113871	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.010000	0.422886	
mm_111654.1	chr12	102855667	102855867	-	1	NA	NA	NA	22639	NM_172806	238386	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	0.015000	0.378109	
mm_45510.1	chr5	72504125	72504325	-	1	NA	NA	NA	-17	NM_016869	53419	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.045000	0.582090	
mm_25277.1	chr3	105452025	105452225	+	1	NA	NA	NA	-205	NM_001039347	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	0.090000	0.731343	
mm_110837.1	chr12	72917758	72917958	-	1	NA	NA	NA	-93	NM_029444	75801	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	0.065000	0.671642	
mm_147582.1	chr18	56498758	56498958	-	1	NA	NA	NA	-39281	NR_106160	102465790		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	0.040000	0.542289	
mm_4323.1	chr1	171851901	171852101	+	1	NA	NA	NA	12304	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.393035	-64(GCTTTTATAAAA,+,0.00),-13(ACTTATAAAGGA,+,0.00)
mm_63550.1	chr7	128070525	128070725	+	1	NA	NA	NA	7985	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.010000	0.552239	
mm_40764.1	chr5	66996950	66997150	+	1	NA	NA	NA	28634	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.070000	0.601990	
mm_32884.1	chr4	118961630	118961830	+	1	NA	NA	NA	-237	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.005000	0.542289	
mm_122926.1	chr14	54961168	54961368	-	1	NA	NA	NA	5339	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.020000	0.557214	
mm_60885.1	chr7	46396389	46396589	+	1	NA	NA	NA	21	NM_001112739	16502	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.165000	0.781095	-79(GGCTTTTTAGGA,-,0.00)
mm_137931.1	chr17	32658796	32658996	+	1	NA	NA	NA	-587	NM_001101588	631304	Mm.328950	NM_001101588	ENSMUSG00000090700	Cyp4f40	EG631304	cytochrome P450, family 4, subfamily f, polypeptide 40	protein-coding	0.005000	0.527363	
mm_30296.1	chr3	148990481	148990681	-	1	NA	NA	NA	-35946	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.100000	0.547264	
mm_152760.1	chr19	20378341	20378541	-	1	NA	NA	NA	12230	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.020000	0.422886	
mm_151274.1	chr19	55251801	55252001	+	1	NA	NA	NA	-1468	NM_027976	433256	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.025000	0.517413	
mm_92730.1	chr10	80855081	80855281	-	1	NA	NA	NA	28	NM_025349	66094	Mm.379101	NM_025349	ENSMUSG00000035215	Lsm7	0910001B06Rik|1110033F18Rik	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.120000	0.636816	
mm_90369.1	chr10	127167678	127167878	+	1	NA	NA	NA	1947	NM_001244618	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.025000	0.582090	
mm_76283.1	chr8	84197578	84197778	-	1	NA	NA	NA	-10840	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.065000	0.641791	
mm_112851.1	chr13	20836066	20836266	+	1	NA	NA	NA	42053	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.338308	-12(CTTTTTAAAAGC,+,0.00),-12(CTTTTTAAAAGC,-,0.00)
mm_56468.1	chr6	98978064	98978264	-	1	NA	NA	NA	50134	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.020000	0.537313	
mm_44176.1	chr5	150973498	150973698	+	1	NA	NA	NA	20991	NM_013823	16591	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.005000	0.457711	15(TGCCTTAAAAAC,-,0.00),17(CCTTAAAAACAA,+,0.00)
mm_30415.1	chr3	152265670	152265870	-	1	NA	NA	NA	550	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.145000	0.781095	
mm_160119.1	chr7	27507706	27507906	+	1	NA	NA	NA	8482	NM_019412	19153	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	0.070000	0.601990	
mm_103739.1	chr11	80080865	80081065	-	1	NA	NA	NA	26	NM_001277106	54394	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.140000	0.751244	
mm_173053.1	chrX	12265043	12265243	+	1	NA	NA	NA	89853	NR_045321	100043946	Mm.211985	NR_045321	ENSMUSG00000087591	Gm14635	OTTMUSG00000017536	predicted gene 14635	ncRNA	0.025000	0.547264	
mm_15224.1	chr2	154502601	154502801	+	1	NA	NA	NA	-46203	NM_029305	75480	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0.005000	0.388060	
mm_130034.1	chr15	88978453	88978653	-	1	NA	NA	NA	0	NM_133241	170790	Mm.32780	NM_133241	ENSMUSG00000035805	Mlc1	AW048630|BB074274|Kiaa0027-hp|LVM|MLC|VL|WKL1|mKIAA0027	megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	protein-coding	0.020000	0.472637	
mm_80649.1	chr9	89909470	89909670	+	1	NA	NA	NA	-205	NM_011245	19417	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	0.100000	0.661692	
mm_47169.1	chr5	120743791	120743991	-	1	NA	NA	NA	5957	NM_145227	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.005000	0.587065	
mm_44245.1	chr5	5353696	5353896	-	1	NA	NA	NA	26455	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.005000	0.348259	76(TCCCTTAAATGC,-,0.00),78(CCTTAAATGCTC,+,0.00)
mm_40861.1	chr5	73632235	73632435	+	1	NA	NA	NA	86	NM_153568	231296	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	0.030000	0.492537	
mm_57412.1	chr6	124870425	124870625	-	1	NA	NA	NA	-6608	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.015000	0.497512	
mm_28831.1	chr3	96417646	96417846	-	1	NA	NA	NA	-2913	NR_001579	21748		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	0.015000	0.492537	
mm_94779.1	chr11	21456695	21456895	+	1	NA	NA	NA	54385	NR_028259	237694	Mm.72926	NM_172792	ENSMUSG00000078962	4932414J04Rik	-	RIKEN cDNA 4932414J04 gene	ncRNA	0.015000	0.437811	
mm_71388.1	chr8	46151665	46151865	+	1	NA	NA	NA	-17791	NM_025747	66756	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430|mKIAA1430	cilia and flagella associated protein 97	protein-coding	0.160000	0.776119	
mm_6799.1	chr1	84150775	84150975	-	1	NA	NA	NA	68086	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.358209	
mm_53328.1	chr6	129230442	129230642	+	1	NA	NA	NA	7503	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.000000	0.412935	
mm_106416.1	chr11	119151176	119151376	-	1	NA	NA	NA	2861	NR_105899	102465563		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA	0.020000	0.577114	
mm_101549.1	chr11	33578850	33579050	-	1	NA	NA	NA	7	NM_146017	216643	Mm.99989	NM_146017	ENSMUSG00000020159	Gabrp	-	gamma-aminobutyric acid (GABA) A receptor, pi	protein-coding	0.015000	0.552239	
mm_159060.1	chr2	6352536	6352736	+	1	NA	NA	NA	-100	NM_181399	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.025000	0.507463	
mm_141424.1	chr17	29437005	29437205	-	1	NA	NA	NA	-53940	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.040000	0.636816	
mm_46729.1	chr5	110770791	110770991	-	1	NA	NA	NA	-174	NM_173066	75560	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	0.105000	0.706468	
mm_4858.1	chr1	187609556	187609756	+	1	NA	NA	NA	650	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.075000	0.616915	
mm_148979.1	chr19	7581241	7581441	+	1	NA	NA	NA	23882	NM_139269	225845	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.025000	0.582090	
mm_170407.1	chr1	86529069	86529269	+	1	NA	NA	NA	2433	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.010000	0.497512	
mm_90107.1	chr10	117247843	117248043	+	1	NA	NA	NA	-9262	NM_029906	77397	Mm.118350	NM_029906	ENSMUSG00000020177	9530003J23Rik	Lyzf1	RIKEN cDNA 9530003J23 gene	protein-coding	0.005000	0.477612	-85(GCTTAAAGAGGA,+,0.00)
mm_63647.1	chr7	128688390	128688590	+	1	NA	NA	NA	-380	NM_001346517	101490	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0.115000	0.666667	
mm_39708.1	chr5	27382666	27382866	+	1	NA	NA	NA	118626	NM_028561	73526	Mm.389608	NM_028561	ENSMUSG00000048703	Speer4b	1700081O22Rik|SPEER-4B	spermatogenesis associated glutamate (E)-rich protein 4B	protein-coding	0.015000	0.502488	
mm_54154.1	chr6	22391969	22392169	-	1	NA	NA	NA	-35988	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.015000	0.452736	
mm_119993.1	chr14	55591698	55591898	+	1	NA	NA	NA	8	NM_194346	268749	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0.065000	0.671642	
mm_115897.1	chr13	23310063	23310263	-	1	NA	NA	NA	3244	NR_126443	75322	Mm.108666	NR_126443	ENSMUSG00000085488	4930557F10Rik	-	RIKEN cDNA 4930557F10 gene	ncRNA	0.035000	0.487562	-37(CGCTTTTAAAGA,-,0.00),-36(GCTTTTAAAGAT,+,0.00)
mm_53050.1	chr6	124743424	124743624	+	1	NA	NA	NA	-2445	NM_013535	14790	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.025000	0.537313	
mm_35199.1	chr4	17636089	17636289	-	1	NA	NA	NA	-216704	NR_135158	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.005000	0.373134	
mm_42385.1	chr5	114935819	114936019	+	1	NA	NA	NA	-6283	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.005000	0.557214	
mm_133593.1	chr16	91458633	91458833	+	1	NA	NA	NA	-6371	NR_077219	100503120	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.020000	0.417910	31(GCCCATAAAAAG,-,0.00),33(CCATAAAAAGGA,+,0.00)
mm_12070.1	chr2	59634201	59634401	+	1	NA	NA	NA	-12468	NM_001290659	66860	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.010000	0.422886	
mm_135459.1	chr16	45724677	45724877	-	1	NA	NA	NA	-246	NM_019754	56370	Mm.24183	NM_019754	ENSMUSG00000022658	Tagln3	2700038H05Rik|2900005O10Rik|AI426007|Np25	transgelin 3	protein-coding	0.040000	0.547264	
mm_23488.1	chr3	60501283	60501483	+	1	NA	NA	NA	204	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.145000	0.761194	
mm_27488.1	chr3	54734940	54735140	-	1	NA	NA	NA	324	NM_027148	69639	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	0.120000	0.751244	
mm_81338.1	chr9	108517651	108517851	+	1	NA	NA	NA	664	NM_175143	69232	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik	glutamine-rich 1	protein-coding	0.145000	0.751244	
mm_29844.1	chr3	129831290	129831490	-	1	NA	NA	NA	6	NM_026578	68147	Mm.24873	NM_026578	ENSMUSG00000028010	Gar1	AA409823|AI326794|C430047J18Rik|Nola1	GAR1 ribonucleoprotein	protein-coding	0.110000	0.631841	
mm_88465.1	chr10	77565299	77565499	+	1	NA	NA	NA	-16368	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.030000	0.512438	
mm_120743.1	chr14	73178231	73178431	+	1	NA	NA	NA	28520	NR_030459	751541		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.035000	0.542289	
mm_164759.1	chr17	84793726	84793926	+	1	NA	NA	NA	-3040	NM_028233	72416	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0.010000	0.442786	-33(CTGTATATAAGC,-,0.00)
mm_161818.1	chr17	70657411	70657611	+	1	NA	NA	NA	95764	NM_001128181	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.045000	0.547264	
mm_49221.1	chr6	15785172	15785372	+	1	NA	NA	NA	64611	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.000000	0.437811	
mm_164418.1	chr16	42350287	42350487	+	1	NA	NA	NA	-9736	NM_008083	14432	Mm.1222	NM_008083	ENSMUSG00000047261	Gap43	B-50|Basp2|GAP-43	growth associated protein 43	protein-coding	0.010000	0.422886	
mm_20274.1	chr2	126863172	126863372	-	1	NA	NA	NA	12989	NM_001164325	58800	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	0.005000	0.323383	
mm_95968.1	chr11	58917888	58918088	+	1	NA	NA	NA	-69	NM_138678	192194	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	0.025000	0.462687	-91(TCTTATATGCTC,+,0.00)
mm_137784.1	chr17	29494829	29495029	+	1	NA	NA	NA	3884	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.025000	0.597015	
mm_84507.1	chr9	67026563	67026763	-	1	NA	NA	NA	17208	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.000000	0.407960	
mm_44173.1	chr5	150952846	150953046	+	1	NA	NA	NA	339	NM_013823	16591	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.120000	0.701493	
mm_37443.1	chr4	123323521	123323721	-	1	NA	NA	NA	58	NM_022033	64059	Mm.270287	NM_022033	ENSMUSG00000076436	Oxct2a	Oxct|Oxct2|Scot|Scot-t1	3-oxoacid CoA transferase 2A	protein-coding	0.060000	0.661692	
mm_55486.1	chr6	69198055	69198255	-	1	NA	NA	NA	129019	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.358209	-27(TTGTTTTAAAGC,-,0.00)
mm_81378.1	chr9	108914505	108914705	+	1	NA	NA	NA	-14	NM_027066	69384	Mm.158271	NM_027066	ENSMUSG00000025652	Tmem89	1700024B07Rik	transmembrane protein 89	protein-coding	0.020000	0.572139	
mm_160109.1	chr7	24908261	24908461	+	1	NA	NA	NA	4015	NM_001130152	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.020000	0.611940	
mm_149741.1	chr19	22447957	22448157	+	1	NA	NA	NA	-151	NM_177341	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.045000	0.606965	
mm_167325.1	chr8	69749885	69750085	-	1	NA	NA	NA	-23	NM_001200023	620419	Mm.460423	NM_001200023	ENSMUSG00000092260	Zfp963	-	zinc finger protein 963	protein-coding	0.045000	0.597015	
mm_53751.1	chr6	145340189	145340389	+	1	NA	NA	NA	-47336	NR_003625	381827	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	0.025000	0.512438	
mm_108079.1	chr12	73946192	73946392	+	1	NA	NA	NA	-18238	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.000000	0.288557	64(TTCTTTATATGG,-,0.00),66(CTTTATATGGGT,+,0.00)
mm_37379.1	chr4	120975354	120975554	-	1	NA	NA	NA	-2132	NR_105982	102465614		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.025000	0.462687	
mm_27181.1	chr3	34648387	34648587	-	1	NA	NA	NA	-1508	NM_011443	20674	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0.010000	0.402985	
mm_218.1	chr1	16709375	16709575	+	1	NA	NA	NA	21019	NM_016923	17087	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0.010000	0.407960	
mm_66281.1	chr7	37770229	37770429	-	1	NA	NA	NA	-577	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.075000	0.686567	
mm_52180.1	chr6	99334377	99334577	+	1	NA	NA	NA	-67962	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.015000	0.363184	
mm_3696.1	chr1	153752890	153753090	+	1	NA	NA	NA	3564	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.020000	0.363184	
mm_130780.1	chr15	101531034	101531234	-	1	NA	NA	NA	1686	NM_008474	16680	Mm.25292	NM_008474	ENSMUSG00000044294	Krt84	AV235125|HRb-1|Krt2-16|Krt2-3	keratin 84	protein-coding	0.015000	0.497512	
mm_76291.1	chr8	84201866	84202066	-	1	NA	NA	NA	-6552	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.005000	0.577114	
mm_169909.1	chr16	54867772	54867972	-	1	NA	NA	NA	415365	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0.070000	0.651741	
mm_15783.1	chr2	164334228	164334428	+	1	NA	NA	NA	1563	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.015000	0.417910	
mm_58024.1	chr6	136661738	136661938	-	1	NA	NA	NA	55	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.050000	0.606965	
mm_119304.1	chr14	34774468	34774668	+	1	NA	NA	NA	-45568	NM_008166	14803	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	0.015000	0.457711	-57(CCCTTAATACTG,+,0.00)
mm_3778.1	chr1	156615740	156615940	+	1	NA	NA	NA	57053	NM_001136104	11352	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0.020000	0.527363	
mm_74475.1	chr8	4259128	4259328	-	1	NA	NA	NA	46	NM_183315	330695	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	0.090000	0.736318	
mm_47953.1	chr5	135543170	135543370	-	1	NA	NA	NA	1852	NM_146001	215114	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.005000	0.343284	
mm_148864.1	chr19	6412979	6413179	+	1	NA	NA	NA	-5659	NM_001205235	18190	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0.045000	0.636816	
mm_51216.1	chr6	71353810	71354010	+	1	NA	NA	NA	-19517	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.010000	0.572139	-35(TGCTATATAAGG,-,0.00)
mm_121942.1	chr14	24081871	24082071	-	1	NA	NA	NA	-6906	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.015000	0.472637	
mm_38921.1	chr4	150003042	150003242	-	1	NA	NA	NA	94	NM_001291004	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.010000	0.497512	
mm_149781.1	chr19	23136631	23136831	+	1	NA	NA	NA	-4495	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.030000	0.502488	
mm_22747.1	chr3	19957152	19957352	+	1	NA	NA	NA	198	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.010000	0.348259	
mm_88142.1	chr10	69493506	69493706	+	1	NA	NA	NA	-40102	NM_170729	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.000000	0.378109	
mm_144213.1	chr18	9745100	9745300	+	1	NA	NA	NA	37552	NM_130449	140792	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.000000	0.388060	17(GCATTTATACAG,+,0.00)
mm_131223.1	chr16	9133083	9133283	+	1	NA	NA	NA	303083	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.015000	0.477612	-33(CTGTATAAAAAG,-,0.00)
mm_110552.1	chr12	55490455	55490655	-	1	NA	NA	NA	2092	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.030000	0.592040	
mm_99113.1	chr11	100140716	100140916	+	1	NA	NA	NA	2883	NM_001313963	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.015000	0.507463	
mm_50875.1	chr6	55452194	55452394	+	1	NA	NA	NA	316	NM_007407	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	0.110000	0.706468	
mm_16320.1	chr2	174304467	174304667	+	1	NA	NA	NA	6708	NM_001310085	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.000000	0.373134	
mm_90297.1	chr10	125549279	125549479	+	1	NA	NA	NA	-220844	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.000000	0.437811	
mm_29462.1	chr3	113574609	113574809	-	1	NA	NA	NA	53	NM_007446	11722	Mm.439727	NM_007446	ENSMUSG00000074264	Amy1	Amy-1|Amy1a|C030014B17Rik	amylase 1, salivary	protein-coding	0.015000	0.432836	
mm_113966.1	chr13	51645192	51645392	+	1	NA	NA	NA	60	NM_025415	66197	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0.100000	0.611940	
mm_59812.1	chr7	29170280	29170480	+	1	NA	NA	NA	-10	NM_182696	243897	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	0.085000	0.646766	
mm_3157.1	chr1	135155303	135155503	+	1	NA	NA	NA	8569	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.010000	0.552239	
mm_44630.1	chr5	27139044	27139244	-	1	NA	NA	NA	89945	NM_207282	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.015000	0.482587	63(CTGTTTATAAGA,-,0.00)
mm_108388.1	chr12	80946121	80946321	+	1	NA	NA	NA	722	NM_001347415	20384	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0.135000	0.736318	
mm_144458.1	chr18	23415327	23415527	+	1	NA	NA	NA	18	NM_001285811	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.015000	0.442786	29(GGGTTTTTAAAC,-,0.00),31(GTTTTTAAACTC,+,0.00)
mm_56482.1	chr6	99096152	99096352	-	1	NA	NA	NA	-67954	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.040000	0.532338	
mm_164406.1	chr16	36048004	36048204	-	1	NA	NA	NA	6914	NM_027113	69544	Mm.37802	NM_027113	ENSMUSG00000034379	Wdr5b	2310009C03Rik|AI606931	WD repeat domain 5B	protein-coding	0.005000	0.378109	
mm_19852.1	chr2	113791825	113792025	-	1	NA	NA	NA	-33277	NM_011824	23892	Mm.166318	NM_011824	ENSMUSG00000074934	Grem1	Cktsf1b1|Drm|Grem|ld	gremlin 1, DAN family BMP antagonist	protein-coding	0.010000	0.507463	
mm_21058.1	chr2	152654224	152654424	-	1	NA	NA	NA	-15137	NM_010376	14950	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	0.010000	0.492537	-99(GTTTTTATAGAG,+,0.00)
mm_138008.1	chr17	33829137	33829337	+	1	NA	NA	NA	4592	NR_103514	66416	Mm.29513	NM_023202	ENSMUSG00000041881	Ndufa7	14.5kDa|2400007M02Rik|CI-B14.5a	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	protein-coding	0.000000	0.472637	
mm_40595.1	chr5	64230374	64230574	+	1	NA	NA	NA	117	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.145000	0.781095	
mm_168309.1	chr11	108156834	108157034	-	1	NA	NA	NA	160086	NR_106082	102465705		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0.010000	0.477612	57(ATCCATAAAAGA,-,0.00)
mm_68876.1	chr7	126447358	126447558	-	1	NA	NA	NA	15615	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.015000	0.542289	
mm_165131.1	chr2	8730122	8730322	+	1	NA	NA	NA	-459293	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.005000	0.348259	
mm_131070.1	chr16	4679730	4679930	+	1	NA	NA	NA	-110	NM_030205	78885	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0.070000	0.626866	
mm_166864.1	chr7	24512322	24512522	-	1	NA	NA	NA	5335	NR_110958	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.045000	0.636816	
mm_165511.1	chr2	172399339	172399539	+	1	NA	NA	NA	5645	NM_001276423	320664	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.015000	0.532338	
mm_118062.1	chr13	102843866	102844066	-	1	NA	NA	NA	83711	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.005000	0.437811	
mm_42862.1	chr5	122226624	122226824	+	1	NA	NA	NA	16437	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.000000	0.412935	
mm_58870.1	chr7	16959657	16959857	+	1	NA	NA	NA	-38	NM_001007569	71691	Mm.275673	NM_001007569	ENSMUSG00000041141	Pnmal1	0710005I19Rik	PNMA-like 1	protein-coding	0.040000	0.587065	
mm_2056.1	chr1	87470170	87470370	+	1	NA	NA	NA	6	NM_028473	73234	Mm.7310	NM_028473	ENSMUSG00000026258	3110079O15Rik	Snorc	RIKEN cDNA 3110079O15 gene	protein-coding	0.045000	0.601990	
mm_119565.1	chr14	49066446	49066646	+	1	NA	NA	NA	51	NM_144535	74385	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	0.105000	0.611940	
mm_112557.1	chr13	12565859	12566059	+	1	NA	NA	NA	76	NM_026184	67475	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	0.120000	0.731343	
mm_60434.1	chr7	44476790	44476990	+	1	NA	NA	NA	6543	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.407960	
mm_147525.1	chr18	52529716	52529916	-	1	NA	NA	NA	7	NM_010728	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.040000	0.592040	
mm_87235.1	chr10	40683160	40683360	+	1	NA	NA	NA	-22	NM_177793	327747	Mm.80407	NM_177793	ENSMUSG00000045555	Mettl24	9030224M15Rik	methyltransferase like 24	protein-coding	0.080000	0.706468	
mm_145334.1	chr18	56419076	56419276	+	1	NA	NA	NA	-12956	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.010000	0.393035	
mm_116963.1	chr13	56173059	56173259	-	1	NA	NA	NA	5726	NM_145976	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.005000	0.442786	
mm_113190.1	chr13	24942813	24943013	+	1	NA	NA	NA	-239	NM_008156	14756	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0.015000	0.492537	
mm_12971.1	chr2	90745408	90745608	+	1	NA	NA	NA	138	NM_018828	55935	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0.125000	0.636816	
mm_154359.1	chrM	6215	6415	+	1	NA	NA	NA	NA	NA									0.025000	0.383085	
mm_3605.1	chr1	151677077	151677277	+	1	NA	NA	NA	-78197	NM_001311165	66967	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0.030000	0.542289	
mm_158339.1	chrX	134111731	134111931	-	1	NA	NA	NA	23	NM_172203	237038	Mm.67938	NM_172203	ENSMUSG00000031257	Nox1	GP91-2|MOX1|NOH-1|NOH1|NOX1a|NOX1alpha|Nox-1	NADPH oxidase 1	protein-coding	0.015000	0.437811	
mm_134045.1	chr16	5203856	5204056	-	1	NA	NA	NA	56	NM_013796	27426	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	0.080000	0.676617	
mm_16598.1	chr2	4993181	4993381	-	1	NA	NA	NA	17159	NM_026754	68527	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding	0.010000	0.492537	
mm_91525.1	chr10	37140647	37140847	-	1	NA	NA	NA	-1821	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.030000	0.517413	
mm_67184.1	chr7	73939906	73940106	-	1	NA	NA	NA	73676	NM_009181	20450	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0.005000	0.497512	-6(AGGCTTATAAGC,-,0.00),-4(GCTTATAAGCTG,+,0.00)
mm_65733.1	chr7	28382029	28382229	-	1	NA	NA	NA	-2901	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.040000	0.621891	
mm_20544.1	chr2	131068367	131068567	-	1	NA	NA	NA	-4653	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.010000	0.507463	
mm_126538.1	chr15	82022733	82022933	+	1	NA	NA	NA	6464	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.025000	0.562189	
mm_67984.1	chr7	100664208	100664408	-	1	NA	NA	NA	-1914	NM_001163182	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.005000	0.572139	
mm_75123.1	chr8	34807011	34807211	-	1	NA	NA	NA	-499	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.105000	0.661692	
mm_75837.1	chr8	70527864	70528064	-	1	NA	NA	NA	118	NM_001199631	14232	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|Fkbp38	FK506 binding protein 8	protein-coding	0.125000	0.800995	
mm_74843.1	chr8	24554227	24554427	-	1	NA	NA	NA	22006	NM_145949	209176	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0.025000	0.492537	
mm_17810.1	chr2	33640973	33641173	-	1	NA	NA	NA	-120	NR_046275	100504399	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	0.115000	0.746269	
mm_114340.1	chr13	60761835	60762035	+	1	NA	NA	NA	24429	NM_199148	218275	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.015000	0.577114	-45(GTCTTTATGGAC,+,0.00)
mm_49948.1	chr6	40221717	40221917	+	1	NA	NA	NA	-103661	NM_023538	69923	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding	0.000000	0.432836	
mm_54153.1	chr6	22391661	22391861	-	1	NA	NA	NA	-35680	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.030000	0.512438	
mm_49794.1	chr6	35252638	35252838	+	1	NA	NA	NA	6	NR_027875	67705	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	0.105000	0.736318	
mm_36542.1	chr4	86668623	86668823	-	1	NA	NA	NA	1336	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.015000	0.467662	
mm_132044.1	chr16	27849788	27849988	+	1	NA	NA	NA	-42	NR_033475	100038623	Mm.387135	NR_033475		Gm10823	ENSMUSG00000075290	predicted gene 10823	ncRNA	0.010000	0.393035	
mm_99394.1	chr11	102145436	102145636	+	1	NA	NA	NA	23	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	0.075000	0.666667	
mm_153118.1	chr19	33392007	33392207	-	1	NA	NA	NA	188	NM_001167818	67795	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	0.105000	0.691542	
mm_75975.1	chr8	72136682	72136882	-	1	NA	NA	NA	1490	NM_001001491	326618	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	0.015000	0.472637	-61(TCCCTTATAAGG,-,0.00),-59(CCTTATAAGGTA,+,0.00)
mm_76217.1	chr8	83458339	83458539	-	1	NA	NA	NA	-43	NM_001039137	56367	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	0.035000	0.572139	
mm_19826.1	chr2	110950248	110950448	-	1	NA	NA	NA	-104	NM_001128103	228432	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding	0.035000	0.562189	
mm_141051.1	chr17	25570586	25570786	-	1	NA	NA	NA	0	NM_011447	20681	Mm.258220	NM_011447	ENSMUSG00000024176	Sox8	-	SRY (sex determining region Y)-box 8	protein-coding	0.055000	0.621891	
mm_44923.1	chr5	35739941	35740141	-	1	NA	NA	NA	-10765	NM_194344	231147	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.025000	0.651741	
mm_18183.1	chr2	45111189	45111389	-	1	NA	NA	NA	151	NR_110572	433424	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|OTTMUSG00000012358|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0.030000	0.537313	
mm_38142.1	chr4	134767875	134768075	-	1	NA	NA	NA	29	NM_145554	100017	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.160000	0.766169	
mm_89951.1	chr10	111291434	111291634	+	1	NA	NA	NA	-7145	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.015000	0.398010	25(GAGTCTATAAAG,-,0.00)
mm_84216.1	chr9	61914296	61914496	-	1	NA	NA	NA	114	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.115000	0.666667	
mm_90056.1	chr10	116177633	116177833	+	1	NA	NA	NA	382	NM_001161840	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	0.030000	0.417910	
mm_116105.1	chr13	28949042	28949242	-	1	NA	NA	NA	4540	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.010000	0.288557	-97(GCCTTTTAAGAG,-,0.00),-96(CCTTTTAAGAGG,+,0.00),-95(CTTTTAAGAGGC,+,0.00)
mm_165851.1	chr4	10874417	10874617	+	1	NA	NA	NA	19	NM_026005	67157	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	0.165000	0.736318	
mm_38671.1	chr4	144721384	144721584	-	1	NA	NA	NA	-80	NM_001085536	546849	Mm.457885	NM_001085536	ENSMUSG00000041735	Gm13178	Gm437|OTTMUSG00000010750	predicted gene 13178	protein-coding	0.005000	0.507463	
mm_49790.1	chr6	35205338	35205538	+	1	NA	NA	NA	27822	NM_027513	70699	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	0.030000	0.537313	
mm_77300.1	chr8	117158411	117158611	-	1	NA	NA	NA	376	NM_001081151	209239	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0.115000	0.721393	
mm_20665.1	chr2	132127324	132127524	-	1	NA	NA	NA	17684	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.030000	0.582090	
mm_111119.1	chr12	80967945	80968145	-	1	NA	NA	NA	34	NM_011387	20493	Mm.486361	NM_011387	ENSMUSG00000021135	Slc10a1	Ntcp	solute carrier family 10 (sodium/bile acid cotransporter family), member 1	protein-coding	0.015000	0.512438	
mm_135558.1	chr16	49856264	49856464	-	1	NA	NA	NA	710	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.045000	0.482587	
mm_66593.1	chr7	45434188	45434388	-	1	NA	NA	NA	176	NM_011304	20174	Mm.34410	NM_011304	ENSMUSG00000003868	Ruvbl2	mp47|p47	RuvB-like protein 2	protein-coding	0.045000	0.517413	
mm_13245.1	chr2	98662795	98662995	+	1	NA	NA	NA	1195238	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.035000	0.348259	
mm_149509.1	chr19	11965816	11966016	+	1	NA	NA	NA	72	NM_001033174	76303	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.185000	0.810945	
mm_132546.1	chr16	37883007	37883207	+	1	NA	NA	NA	14707	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.045000	0.577114	
mm_3099.1	chr1	134431079	134431279	+	1	NA	NA	NA	15515	NM_001306069	72674	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.040000	0.552239	
mm_136729.1	chr17	8255954	8256154	+	1	NA	NA	NA	10996	NM_001190338	12458	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	0.005000	0.437811	
mm_49479.1	chr6	29529217	29529417	+	1	NA	NA	NA	35	NM_001252382	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.025000	0.582090	
mm_45682.1	chr5	77351158	77351358	-	1	NA	NA	NA	40774	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.030000	0.462687	48(CCATTTAAAAAC,+,0.00)
mm_5107.1	chr1	5170557	5170757	-	1	NA	NA	NA	87571	NM_001310442	108664	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	0.060000	0.671642	
mm_97407.1	chr11	77930803	77931003	+	1	NA	NA	NA	64	NM_021286	20370	Mm.229330	NM_021286	ENSMUSG00000000632	Sez6	BSRP-C|D11Bhm177e|sez-6	seizure related gene 6	protein-coding	0.140000	0.766169	
mm_147202.1	chr18	37890892	37891092	-	1	NA	NA	NA	-36332	NR_105945	102465592		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.000000	0.611940	
mm_94394.1	chr11	5542344	5542544	+	1	NA	NA	NA	-227	NM_134033	104479	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	0.025000	0.482587	
mm_91775.1	chr10	51970165	51970365	-	1	NA	NA	NA	-52237	NM_001300957	215031	Mm.87237	NM_153786	ENSMUSG00000049641	Vgll2	C130057C21Rik|VITO-1|Vito1|vgl-2	vestigial like family member 2	protein-coding	0.015000	0.497512	
mm_102056.1	chr11	52252562	52252762	-	1	NA	NA	NA	20667	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.005000	0.338308	
mm_102574.1	chr11	61647139	61647339	-	1	NA	NA	NA	-6082	NM_027817	71520	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.005000	0.432836	
mm_74635.1	chr8	13201321	13201521	-	1	NA	NA	NA	-797	NM_025768	66790	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	0.030000	0.532338	
mm_34067.1	chr4	138454841	138455041	+	1	NA	NA	NA	-207	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.170000	0.805970	
mm_34356.1	chr4	144891327	144891527	+	1	NA	NA	NA	-1400	NM_001172424	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.010000	0.567164	
mm_26780.1	chr3	9004530	9004730	-	1	NA	NA	NA	-115	NM_001025264	21985	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.105000	0.686567	
mm_115601.1	chr13	11892716	11892916	-	1	NA	NA	NA	214129	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.005000	0.432836	
mm_107440.1	chr12	36314066	36314266	+	1	NA	NA	NA	-3	NM_025312	66042	Mm.43375	NM_025312	ENSMUSG00000036169	Sostdc1	0610006G05Rik|Sostl|USAG-1|Wise|ectodin	sclerostin domain containing 1	protein-coding	0.020000	0.497512	25(GGCTATATAAAG,-,0.00),27(CTATATAAAGGG,+,0.00),27(CTATATAAAGGG,-,0.00)
mm_118109.1	chr13	103921009	103921209	-	1	NA	NA	NA	-523	NM_001005868	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.140000	0.776119	
mm_136624.1	chr17	5540017	5540217	+	1	NA	NA	NA	47517	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.000000	0.522388	
mm_165543.1	chr2	181680238	181680438	+	1	NA	NA	NA	28	NM_009326	21400	Mm.24245	NM_009326	ENSMUSG00000059540	Tcea2	AI326274|S-II-T1|SII-T1|Tceat	transcription elongation factor A (SII), 2	protein-coding	0.115000	0.626866	
mm_79785.1	chr9	63093337	63093537	+	1	NA	NA	NA	53543	NM_172446	207667	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.020000	0.532338	
mm_170770.1	chr2	162919722	162919922	-	1	NA	NA	NA	-11686	NM_026499	67996	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	0.030000	0.482587	
mm_153503.1	chr19	41339457	41339657	-	1	NA	NA	NA	45513	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.020000	0.587065	
mm_32903.1	chr4	119105962	119106162	+	1	NA	NA	NA	-2683	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.030000	0.572139	30(TCCTTTAAGGGC,+,0.00),31(CCTTTAAGGGCT,+,0.00)
mm_16066.1	chr2	168078654	168078854	+	1	NA	NA	NA	-2250	NM_021409	58220	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0.020000	0.567164	
mm_105859.1	chr11	113752232	113752432	-	1	NA	NA	NA	-517	NM_001163346	56699	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.035000	0.547264	
mm_166627.1	chr6	78372768	78372968	-	1	NA	NA	NA	1983	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.010000	0.472637	
mm_13709.1	chr2	117159221	117159421	+	1	NA	NA	NA	-25806	NR_030440	732489		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.000000	0.273632	
mm_168897.1	chr12	54363163	54363363	-	1	NA	NA	NA	28055	NR_033689	665239	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.035000	0.512438	-39(TTCTATAAAAAC,-,0.00)
mm_75742.1	chr8	69774800	69775000	-	1	NA	NA	NA	11	NM_177899	330788	Mm.41364	NM_177899	ENSMUSG00000043090	Zfp866	9830167H18Rik|AI875089|C85843|D330038O06Rik	zinc finger protein 866	protein-coding	0.075000	0.606965	
mm_101204.1	chr11	19018885	19019085	-	1	NA	NA	NA	-16	NM_010789	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.080000	0.601990	
mm_7201.1	chr1	93015985	93016185	-	1	NA	NA	NA	9751	NM_001159658	208760	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0.020000	0.502488	
mm_36588.1	chr4	88427983	88428183	-	1	NA	NA	NA	10843	NM_025760	66775	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.000000	0.323383	21(GCCCTTTTAAGC,-,0.00),23(CCTTTTAAGCAC,+,0.00)
mm_56098.1	chr6	87458153	87458353	-	1	NA	NA	NA	29259	NM_009756	12154	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	-	bone morphogenetic protein 10	protein-coding	0.010000	0.417910	64(AAGTATAAAAAG,-,0.00)
mm_14631.1	chr2	136781266	136781466	+	1	NA	NA	NA	67916	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.005000	0.412935	
mm_97786.1	chr11	82781143	82781343	+	1	NA	NA	NA	134	NM_010716	16882	Mm.277136	NM_010716	ENSMUSG00000020697	Lig3	D11Wsu78e	ligase III, DNA, ATP-dependent	protein-coding	0.135000	0.731343	-77(CCGTATTTAAAG,-,0.00)
mm_38773.1	chr4	147936665	147936865	-	1	NA	NA	NA	11	NM_011122	18822	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	0.110000	0.691542	
mm_141055.1	chr17	25751445	25751645	-	1	NA	NA	NA	2782	NM_018857	56047	Mm.17510	NM_018857	ENSMUSG00000063011	Msln	MPF	mesothelin	protein-coding	0.000000	0.552239	
mm_75399.1	chr8	46207510	46207710	-	1	NA	NA	NA	3399	NM_007450	11739	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	0.030000	0.487562	
mm_69021.1	chr7	126792091	126792291	-	1	NA	NA	NA	280	NM_019674	56420	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|Ppx	protein phosphatase 4, catalytic subunit	protein-coding	0.100000	0.701493	
mm_40492.1	chr5	57717243	57717443	+	1	NA	NA	NA	576	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	0.095000	0.646766	
mm_10902.1	chr2	25289817	25290017	+	1	NA	NA	NA	6	NM_146117	227618	Mm.275228	NM_146117	ENSMUSG00000026961	Lrrc26	-	leucine rich repeat containing 26	protein-coding	0.035000	0.577114	
mm_66340.1	chr7	43464149	43464349	-	1	NA	NA	NA	1016	NM_001290316	75690	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.020000	0.547264	
mm_172990.1	chrM	1119	1319	+	1	NA	NA	NA	NA	NA									0.010000	0.268657	
mm_52588.1	chr6	116666250	116666450	+	1	NA	NA	NA	7486	NM_178045	213391	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.010000	0.383085	
mm_114250.1	chr13	56639573	56639773	+	1	NA	NA	NA	30070	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.005000	0.398010	
mm_172585.1	chr8	123373637	123373837	+	1	NA	NA	NA	26	NM_001286363	66855	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0.125000	0.691542	
mm_65966.1	chr7	30435683	30435883	-	1	NA	NA	NA	9799	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.045000	0.592040	
mm_84204.1	chr9	60687372	60687572	-	1	NA	NA	NA	62	NM_001311095	102747	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0.015000	0.457711	
mm_150722.1	chr19	43612210	43612410	+	1	NA	NA	NA	-15	NM_008699	18089	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	0.065000	0.636816	
mm_93046.1	chr10	88503779	88503979	-	1	NA	NA	NA	91	NR_027477	212862	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	0.155000	0.810945	
mm_45547.1	chr5	72914035	72914235	-	1	NA	NA	NA	-227	NM_001113423	75991	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0.090000	0.721393	
mm_80257.1	chr9	72807152	72807352	+	1	NA	NA	NA	-22	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.140000	0.771144	
mm_16239.1	chr2	173156282	173156482	+	1	NA	NA	NA	3309	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.015000	0.497512	
mm_57554.1	chr6	126854159	126854359	-	1	NA	NA	NA	1161	NM_009650	11642	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	0.015000	0.462687	
mm_131147.1	chr16	6523482	6523682	+	1	NA	NA	NA	-546253	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.000000	0.442786	
mm_168187.1	chr10	61062985	61063185	-	1	NA	NA	NA	-26246	NM_025273	13180	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.005000	0.502488	
mm_78208.1	chr9	21490269	21490469	+	1	NA	NA	NA	6195	NR_029585	387194		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.010000	0.422886	
mm_158486.1	chrX	142318777	142318977	-	1	NA	NA	NA	-12679	NM_021487	66240	Mm.58507	NM_021487	ENSMUSG00000090122	Kcne1l	1500015C14Rik|Kcne5|Mink	potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	protein-coding	0.005000	0.348259	
mm_127312.1	chr15	100246132	100246332	+	1	NA	NA	NA	18373	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.025000	0.497512	
mm_60917.1	chr7	46832306	46832506	+	1	NA	NA	NA	-13398	NM_010699	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.015000	0.487562	
mm_170448.1	chr18	83707554	83707754	+	1	NA	NA	NA	378908	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.030000	0.482587	
mm_104007.1	chr11	85083381	85083581	-	1	NA	NA	NA	56474	NM_001029934	237898	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0.015000	0.318408	
mm_129798.1	chr15	82889102	82889302	-	1	NA	NA	NA	9259	NR_027799	21378	Mm.417272	NR_027799		Tbrg3	TB-11	transforming growth factor beta regulated gene 3	ncRNA	0.010000	0.343284	
mm_160539.1	chr9	40963972	40964172	-	1	NA	NA	NA	40	NM_001081121	70989	Mm.335087	NM_001081121	ENSMUSG00000032023	Jhy	4931429I11Rik|BB239335	juvenile hydrocephalus	protein-coding	0.145000	0.805970	
mm_98087.1	chr11	86587142	86587342	+	1	NA	NA	NA	-3084	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.005000	0.452736	
mm_167896.1	chrX	71962481	71962681	+	1	NA	NA	NA	-44	NM_001303028	208748	Mm.25626	NM_001081135	ENSMUSG00000033361	Prrg3	Gm368	proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)	protein-coding	0.100000	0.706468	
mm_103906.1	chr11	83578402	83578602	-	1	NA	NA	NA	134	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.005000	0.497512	
mm_169862.1	chr16	3352957	3353157	+	1	NA	NA	NA	-239341	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.015000	0.412935	
mm_94712.1	chr11	20542773	20542973	+	1	NA	NA	NA	-380	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.085000	0.681592	
mm_49630.1	chr6	30804738	30804938	+	1	NA	NA	NA	63539	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.005000	0.572139	
mm_34947.1	chr4	155892221	155892421	+	1	NA	NA	NA	446	NM_207223	140500	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	0.165000	0.771144	
mm_161796.1	chr17	49476275	49476475	-	1	NA	NA	NA	48011	NM_020042	56738	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.015000	0.462687	
mm_168800.1	chr12	20196519	20196719	+	1	NA	NA	NA	619160	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.125000	0.766169	
mm_82579.1	chr9	21149466	21149666	-	1	NA	NA	NA	340	NM_016742	12539	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0.010000	0.437811	
mm_83983.1	chr9	57421246	57421446	-	1	NA	NA	NA	18768	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.015000	0.542289	
mm_60006.1	chr7	30722396	30722596	+	1	NA	NA	NA	7038	NM_027215	69804	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	0.040000	0.616915	
mm_105639.1	chr11	106999393	106999593	-	1	NA	NA	NA	32	NM_010655	16647	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.095000	0.592040	
mm_119010.1	chr14	29968256	29968456	+	1	NA	NA	NA	-24	NM_019979	80795	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	0.045000	0.587065	
mm_2259.1	chr1	91116575	91116775	+	1	NA	NA	NA	-28428	NM_001033408	329207	Mm.295940	NM_001033408	ENSMUSG00000070732	Rbm44	Gm817	RNA binding motif protein 44	protein-coding	0.005000	0.383085	
mm_57200.1	chr6	122850523	122850723	-	1	NA	NA	NA	5534	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.005000	0.447761	
mm_149682.1	chr19	20492584	20492784	+	1	NA	NA	NA	-31	NR_015502	320092	Mm.482524	NR_015502		E030003E18Rik	1700127G21Rik	RIKEN cDNA E030003E18 gene	ncRNA	0.000000	0.502488	
mm_40100.1	chr5	34573779	34573979	+	1	NA	NA	NA	215	NM_001331086	11518	Mm.289106	NM_013457	ENSMUSG00000029106	Add1	AI256389	adducin 1 (alpha)	protein-coding	0.140000	0.800995	
mm_74468.1	chr8	4217385	4217585	-	1	NA	NA	NA	-173	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.025000	0.552239	
mm_113550.1	chr13	38149378	38149578	+	1	NA	NA	NA	-1816	NM_023842	109620	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding	0.010000	0.467662	
mm_105053.1	chr11	100701329	100701529	-	1	NA	NA	NA	2842	NM_030150	80861	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0.050000	0.592040	-85(GCCTTTAGGGGC,+,0.00),-70(GCCTTAAGGGGC,+,0.00)
mm_121130.1	chr14	101840806	101841006	+	1	NA	NA	NA	283	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.020000	0.398010	
mm_79003.1	chr9	45410015	45410215	+	1	NA	NA	NA	4038	NM_007503	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.010000	0.582090	
mm_129697.1	chr15	81586277	81586477	-	1	NA	NA	NA	163	NM_177821	328572	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.085000	0.666667	
mm_59923.1	chr7	30422339	30422539	+	1	NA	NA	NA	-865	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.080000	0.592040	
mm_15611.1	chr2	160747280	160747480	+	1	NA	NA	NA	16070	NM_021280	18803	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.035000	0.532338	
mm_152118.1	chr19	6987330	6987530	-	1	NA	NA	NA	221	NM_001185164	22340	Mm.15607	NM_011697	ENSMUSG00000024962	Vegfb	VEGF-B|Vrf	vascular endothelial growth factor B	protein-coding	0.125000	0.791045	
mm_141366.1	chr17	28942163	28942363	-	1	NA	NA	NA	-1	NM_153390	69307	Mm.107605	NM_153390	ENSMUSG00000045378	Pxt1	1700001G18Rik|Stepp	peroxisomal, testis specific 1	protein-coding	0.035000	0.601990	
mm_11094.1	chr2	27951197	27951397	+	1	NA	NA	NA	64872	NM_015734	12831	Mm.7281	NM_015734	ENSMUSG00000026837	Col5a1	AI413331	collagen, type V, alpha 1	protein-coding	0.020000	0.572139	
mm_80103.1	chr9	70321529	70321729	+	1	NA	NA	NA	84124	NR_049200	100885839		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0.005000	0.388060	
mm_144402.1	chr18	20774243	20774443	+	1	NA	NA	NA	-27939	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.000000	0.542289	
mm_137524.1	chr17	27325294	27325494	+	1	NA	NA	NA	-2991	NR_106075	102466818		NR_106075	ENSMUSG00000099237	Mir7216	Gm27555|mmu-mir-7216	microRNA 7216	ncRNA	0.060000	0.572139	
mm_164395.1	chr16	33794029	33794229	+	1	NA	NA	NA	92	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.015000	0.487562	
mm_23207.1	chr3	41561620	41561820	+	1	NA	NA	NA	-1663	NM_172303	269424	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.000000	0.343284	
mm_73439.1	chr8	106163007	106163207	+	1	NA	NA	NA	-5768	NM_178798	330836	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	0.060000	0.582090	
mm_91841.1	chr10	57531770	57531970	-	1	NA	NA	NA	659	NM_019760	56442	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	0.025000	0.358209	-48(TTCTAGAAAAGG,-,0.00)
mm_142215.1	chr17	37054080	37054280	-	1	NA	NA	NA	8214	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.025000	0.562189	
mm_155952.1	chrX	105082657	105082857	+	1	NA	NA	NA	3001	NM_026312	67683	Mm.273405	NM_026312	ENSMUSG00000031226	Pbdc1	2610029G23Rik	polysaccharide biosynthesis domain containing 1	protein-coding	0.020000	0.432836	-73(GCATTTATAGAA,+,0.00)
mm_133220.1	chr16	76294004	76294204	+	1	NA	NA	NA	78945	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.020000	0.467662	51(CACTTTTAAAGA,-,0.00),52(ACTTTTAAAGAC,+,0.00)
mm_8645.1	chr1	156430708	156430908	-	1	NA	NA	NA	-9893	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.005000	0.393035	
mm_2694.1	chr1	127756657	127756857	+	1	NA	NA	NA	17297	NR_045298	100502745	Mm.440061	NR_045298	ENSMUSG00000102014	2900009J06Rik	-	RIKEN cDNA 2900009J06 gene	ncRNA	0.010000	0.512438	-33(CAGTTTTAAAGG,-,0.00)
mm_148246.1	chr18	80698296	80698496	-	1	NA	NA	NA	9777	NM_001164111	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.060000	0.611940	
mm_117249.1	chr13	64365137	64365337	-	1	NA	NA	NA	5283	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.005000	0.388060	
mm_107209.1	chr12	26444402	26444602	+	1	NA	NA	NA	11950	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.323383	
mm_131139.1	chr16	6348612	6348812	+	1	NA	NA	NA	373125	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA	0.055000	0.616915	
mm_169374.1	chr14	3651954	3652154	+	1	NA	NA	NA	24	NR_033121	100041530	Mm.444311	NR_033121	ENSMUSG00000096488	Gm10409	EG666890|ENSMUSG00000072740|Gm8348	predicted pseudogene 8348	pseudo	0.115000	0.756219	
mm_3802.1	chr1	157526040	157526240	+	1	NA	NA	NA	-30	NM_001159986	89867	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	0.030000	0.567164	8(GTCTCTAAGAGG,-,0.00)
mm_140195.1	chr17	83421518	83421718	+	1	NA	NA	NA	70687	NM_001114362	78798	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0.005000	0.323383	
mm_100894.1	chr11	6065801	6066001	-	1	NA	NA	NA	-153	NM_007595	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	0.155000	0.756219	
mm_44518.1	chr5	24351580	24351780	-	1	NA	NA	NA	-76	NM_013569	16511	Mm.6539	NM_013569	ENSMUSG00000038319	Kcnh2	AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding	0.175000	0.830846	
mm_134635.1	chr16	21742964	21743164	-	1	NA	NA	NA	44770	NM_023737	74147	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0.005000	0.457711	
mm_30540.1	chr4	3656413	3656613	+	1	NA	NA	NA	7	NR_040643	70143	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0.015000	0.452736	
mm_95717.1	chr11	54522719	54522919	+	1	NA	NA	NA	-26	NM_001252494	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.130000	0.681592	
mm_19103.1	chr2	79454562	79454762	-	1	NA	NA	NA	1974	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.080000	0.567164	
mm_131894.1	chr16	23234040	23234240	+	1	NA	NA	NA	8119	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.000000	0.393035	
mm_48936.1	chr6	4538531	4538731	+	1	NA	NA	NA	33013	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.000000	0.338308	
mm_125919.1	chr15	76188121	76188321	+	1	NA	NA	NA	7489	NM_201394	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.025000	0.601990	
mm_15007.1	chr2	152477003	152477203	+	1	NA	NA	NA	40	NM_176950	319579	Mm.190454	NM_176950	ENSMUSG00000049560	Defb20	9230107O10Rik|BD-20|mBD-20	defensin beta 20	protein-coding	0.010000	0.517413	
mm_80412.1	chr9	77754484	77754684	+	1	NA	NA	NA	49	NM_010295	14629	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.160000	0.756219	-84(GCCTATAAAATC,-,0.00)
mm_109060.1	chr12	104340919	104341119	+	1	NA	NA	NA	2533	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.000000	0.482587	
mm_141966.1	chr17	35121304	35121504	-	1	NA	NA	NA	25	NM_001303445	13001	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	0.095000	0.656716	
mm_115502.1	chr13	3918088	3918288	-	1	NA	NA	NA	32	NM_019671	56349	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0.080000	0.631841	
mm_13276.1	chr2	101563226	101563426	+	1	NA	NA	NA	-61422	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.020000	0.487562	
mm_13066.1	chr2	91118043	91118243	+	1	NA	NA	NA	-1	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.010000	0.532338	
mm_168123.1	chr10	20166839	20167039	-	1	NA	NA	NA	18019	NM_001198635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.035000	0.552239	
mm_172978.1	chr9	96478485	96478685	-	1	NA	NA	NA	90	NM_011279	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.135000	0.696517	
mm_12053.1	chr2	59237746	59237946	+	1	NA	NA	NA	76996	NM_175464	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.005000	0.343284	-93(GTGCATATATGG,-,0.00)
mm_138866.1	chr17	43027023	43027223	+	1	NA	NA	NA	10568	NM_178589	94185	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0.000000	0.253731	
mm_120821.1	chr14	75136442	75136642	+	1	NA	NA	NA	117	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.020000	0.497512	
mm_102202.1	chr11	54764064	54764264	-	1	NA	NA	NA	23539	NM_178626	72729	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.015000	0.532338	
mm_92277.1	chr10	71237960	71238160	-	1	NA	NA	NA	-16	NM_009360	21780	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	0.115000	0.711443	
mm_160469.1	chr8	111538097	111538297	+	1	NA	NA	NA	-146	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.015000	0.472637	
mm_18657.1	chr2	69885494	69885694	-	1	NA	NA	NA	21	NM_029280	75422	Mm.10508	NM_029280	ENSMUSG00000051730	Mettl5	2810410A08Rik	methyltransferase like 5	protein-coding	0.110000	0.691542	
mm_46082.1	chr5	92327977	92328177	-	1	NA	NA	NA	2	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.015000	0.457711	
mm_115658.1	chr13	12459175	12459375	-	1	NA	NA	NA	41	NM_001291055	56048	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.010000	0.308458	67(CCTTAAATAACC,+,0.00)
mm_103362.1	chr11	74925855	74926055	-	1	NA	NA	NA	83	NM_001002764	103677	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.115000	0.731343	
mm_77887.1	chr9	7344230	7344430	+	1	NA	NA	NA	-67	NM_001320077	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.442786	
mm_83023.1	chr9	37147190	37147390	-	1	NA	NA	NA	32	NM_148950	208076	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.075000	0.646766	
mm_43374.1	chr5	135669881	135670081	+	1	NA	NA	NA	-19164	NM_008898	18984	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.015000	0.567164	
mm_39893.1	chr5	31193191	31193391	+	1	NA	NA	NA	-13	NM_153680	266781	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	0.080000	0.631841	
mm_57332.1	chr6	124741088	124741288	-	1	NA	NA	NA	-109	NM_013535	14790	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.045000	0.502488	
mm_128804.1	chr15	66943944	66944144	-	1	NA	NA	NA	25597	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.025000	0.502488	
mm_66915.1	chr7	60005056	60005256	-	1	NA	NA	NA	0	NM_013670	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding	0.060000	0.592040	
mm_121396.1	chr14	119137707	119137907	+	1	NA	NA	NA	-458	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.130000	0.736318	
mm_1957.1	chr1	86413849	86414049	+	1	NA	NA	NA	-12380	NM_027966	71863	Mm.179627	NM_027966	ENSMUSG00000036574	1700019O17Rik	-	RIKEN cDNA 1700019O17 gene	protein-coding	0.015000	0.457711	
mm_8220.1	chr1	138164662	138164862	-	1	NA	NA	NA	10364	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.005000	0.442786	
mm_42869.1	chr5	122233500	122233700	+	1	NA	NA	NA	23313	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.025000	0.587065	
mm_90206.1	chr10	120461918	120462118	+	1	NA	NA	NA	-13908	NR_030434	791076		NR_030434	ENSMUSG00000076448	Mir763	Mirn763|mir-763|mmu-mir-763	microRNA 763	ncRNA	0.020000	0.597015	
mm_61425.1	chr7	73620485	73620685	+	1	NA	NA	NA	-62190	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.025000	0.422886	
mm_116219.1	chr13	32851081	32851281	-	1	NA	NA	NA	4	NM_025429	66222	Mm.20144	NM_025429	ENSMUSG00000044734	Serpinb1a	1190005M04Rik|AI325983|EI|EIA|ELANH2|LEI|M/NEI|MNEI|PI2	serine (or cysteine) peptidase inhibitor, clade B, member 1a	protein-coding	0.010000	0.552239	-33(TGCTATAAAGGC,-,0.00)
mm_24221.1	chr3	88685691	88685891	+	1	NA	NA	NA	-3	NM_028814	74200	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	0.105000	0.651741	
mm_116958.1	chr13	56138515	56138715	-	1	NA	NA	NA	-3065	NM_001159513	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.015000	0.502488	
mm_77502.1	chr8	122678447	122678647	-	1	NA	NA	NA	-372	NM_177289	12398	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0.140000	0.776119	
mm_4611.1	chr1	178555607	178555807	+	1	NA	NA	NA	26582	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.015000	0.467662	
mm_9958.1	chr1	191062804	191063004	-	1	NA	NA	NA	28	NM_001163421	68972	Mm.237188	NM_026895	ENSMUSG00000026632	Tatdn3	1500010M24Rik	TatD DNase domain containing 3	protein-coding	0.095000	0.646766	
mm_25647.1	chr3	121426418	121426618	+	1	NA	NA	NA	-23	NM_028044	71994	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0.105000	0.746269	
mm_109536.1	chr12	111544913	111545113	+	1	NA	NA	NA	4067	NR_033168	100316932	Mm.484709	NR_033168	ENSMUSG00000064493	Snora28	MBI-13	small nucleolar RNA, H/ACA box 28	snoRNA	0.000000	0.343284	
mm_160799.1	chr11	4947544	4947744	+	1	NA	NA	NA	123	NM_001243043	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.135000	0.716418	
mm_27440.1	chr3	51788609	51788809	-	1	NA	NA	NA	127530	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.015000	0.442786	
mm_112636.1	chr13	16012149	16012349	+	1	NA	NA	NA	398	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.050000	0.537313	-17(GCTTTTAAACGA,+,0.00)
mm_91337.1	chr10	25707914	25708114	-	1	NA	NA	NA	129423	NR_045349	73803	Mm.258921	NR_045349		4930401C15Rik	-	RIKEN cDNA 4930401C15 gene	ncRNA	0.035000	0.567164	
mm_10535.1	chr2	16424420	16424620	+	1	NA	NA	NA	68216	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.000000	0.487562	
mm_78579.1	chr9	36850285	36850485	+	1	NA	NA	NA	6726	NM_183171	235180	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	0.005000	0.497512	
mm_24196.1	chr3	88609651	88609851	+	1	NA	NA	NA	-6456	NM_001198911	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.363184	
mm_157957.1	chrX	87854122	87854322	-	1	NA	NA	NA	261401	NM_001160403	331461	Mm.121680	NM_001160403	ENSMUSG00000052372	Il1rapl1	6330532G10Rik|C030039N24|IL1R8|IL1RAPL|MRX34|OPHN4|TIGIRR-2	interleukin 1 receptor accessory protein-like 1	protein-coding	0.005000	0.378109	
mm_29132.1	chr3	105687633	105687833	-	1	NA	NA	NA	-162	NM_017397	53975	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	0.140000	0.746269	
mm_49246.1	chr6	17307648	17307848	+	1	NA	NA	NA	108	NM_001243064	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.045000	0.542289	
mm_51119.1	chr6	67913454	67913654	+	1	NA	NA	NA	-347855	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.010000	0.447761	
mm_49576.1	chr6	30641674	30641874	+	1	NA	NA	NA	2556	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.015000	0.512438	
mm_41002.1	chr5	77465372	77465572	+	1	NA	NA	NA	-16	NR_131050	69370	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0.035000	0.487562	
mm_114473.1	chr13	67863286	67863486	+	1	NA	NA	NA	60	NM_001001185	408058	Mm.177840	NM_001001185	ENSMUSG00000064063	BC048507	-	cDNA sequence BC048507	protein-coding	0.050000	0.527363	
mm_106264.1	chr11	117968533	117968733	-	1	NA	NA	NA	733	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.065000	0.626866	
mm_106693.1	chr12	3426805	3427005	+	1	NA	NA	NA	48	NM_172421	75302	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2 (Drosophila)	protein-coding	0.120000	0.701493	
mm_84396.1	chr9	65551951	65552151	-	1	NA	NA	NA	28036	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.010000	0.452736	
mm_41756.1	chr5	102845860	102846060	+	1	NA	NA	NA	953	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.025000	0.502488	
mm_97017.1	chr11	71019817	71020017	+	1	NA	NA	NA	-76	NM_001291146	116891	Mm.28131	NM_033562	ENSMUSG00000018442	Derl2	CGI-101|Derlin-2|F-lana|Flana	Der1-like domain family, member 2	protein-coding	0.085000	0.601990	
mm_97010.1	chr11	70970392	70970592	+	1	NA	NA	NA	292	NM_001252415	69723	Mm.275691	NM_027186	ENSMUSG00000018449	Rpain	2400006N03Rik|Rip	RPA interacting protein	protein-coding	0.070000	0.597015	
mm_130109.1	chr15	89476015	89476215	-	1	NA	NA	NA	-137	NR_077233	100532730	Mm.461541	NR_077233		C230037L18Rik	-	RIKEN cDNA C230037L18 gene	ncRNA	0.060000	0.611940	
mm_44937.1	chr5	36397972	36398172	-	1	NA	NA	NA	67	NM_030889	81840	Mm.34113	NM_030889	ENSMUSG00000029093	Sorcs2	N28137|mKIAA1329	sortilin-related VPS10 domain containing receptor 2	protein-coding	0.120000	0.731343	
mm_98144.1	chr11	87582108	87582308	+	1	NA	NA	NA	1147	NM_001284392	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding	0.010000	0.547264	
mm_26934.1	chr3	20263466	20263666	-	1	NA	NA	NA	12167	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.015000	0.432836	
mm_75433.1	chr8	47289269	47289469	-	1	NA	NA	NA	33	NM_001286376	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.110000	0.726368	
mm_24308.1	chr3	89395616	89395816	+	1	NA	NA	NA	1426	NR_040404	545539	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	ENSMUSG00000074466|OTTMUSG00000021274	predicted gene 15417	ncRNA	0.030000	0.562189	
mm_14338.1	chr2	129592917	129593117	+	1	NA	NA	NA	-152	NM_001291019	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.110000	0.706468	-78(CACCTTAAGAGG,-,0.00)
mm_154065.1	chr19	55315806	55316006	-	1	NA	NA	NA	126	NM_025883	66980	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369	zinc finger, DHHC domain containing 6	protein-coding	0.120000	0.656716	
mm_16912.1	chr2	13493565	13493765	-	1	NA	NA	NA	-1789	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.005000	0.472637	
mm_148780.1	chr19	6112794	6112994	+	1	NA	NA	NA	5692	NM_133678	66406	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.025000	0.587065	
mm_139323.1	chr17	48411690	48411890	+	1	NA	NA	NA	1790	NM_207219	106821	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	0.020000	0.402985	
mm_71020.1	chr8	33484097	33484297	+	1	NA	NA	NA	-114	NR_033589	628431	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	0.000000	0.482587	
mm_134734.1	chr16	22899129	22899329	-	1	NA	NA	NA	-4843	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.010000	0.527363	
mm_12181.1	chr2	65189444	65189644	+	1	NA	NA	NA	49082	NM_177025	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.025000	0.572139	
mm_23312.1	chr3	53083513	53083713	+	1	NA	NA	NA	42066	NM_175386	108927	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968	lipoma HMGIC fusion partner	protein-coding	0.010000	0.432836	
mm_23204.1	chr3	41555602	41555802	+	1	NA	NA	NA	-32	NM_001130184	269424	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.050000	0.626866	
mm_61365.1	chr7	69579557	69579757	+	1	NA	NA	NA	83563	NR_045940	73796	Mm.410832	NR_045940	ENSMUSG00000108885	4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA	0.030000	0.522388	
mm_110915.1	chr12	76229357	76229557	-	1	NA	NA	NA	17289	NM_019784	80384	Mm.78551	NM_019784	ENSMUSG00000021056	Tex21	4931406F04Rik|4931412D23Rik|4931421K24Rik|tsec-2	testis expressed gene 21	protein-coding	0.045000	0.542289	
mm_50819.1	chr6	54431386	54431586	+	1	NA	NA	NA	-1265	NR_033635	100042056	Mm.448157	NM_198118	ENSMUSG00000073067	9130019P16Rik	6430501H15Rik|OTTMUSG00000023151	RIKEN cDNA 9130019P16 gene	ncRNA	0.005000	0.412935	
mm_157201.1	chrX	12354893	12355093	-	1	NA	NA	NA	3	NR_045321	100043946	Mm.211985	NR_045321	ENSMUSG00000087591	Gm14635	OTTMUSG00000017536	predicted gene 14635	ncRNA	0.010000	0.542289	-22(CCTCTTAGAGTC,+,0.00)
mm_132634.1	chr16	39026645	39026845	+	1	NA	NA	NA	124400	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.000000	0.447761	
mm_148100.1	chr18	73971210	73971410	-	1	NA	NA	NA	-46597	NR_045390	77855	Mm.410760	NR_045390	ENSMUSG00000090263	D730045A05Rik	-	RIKEN cDNA D730045A05 gene	ncRNA	0.030000	0.517413	
mm_18876.1	chr2	76338848	76339048	-	1	NA	NA	NA	-295	NM_001081033	241489	Mm.246613	NM_001081033	ENSMUSG00000075270	Pde11a	6330414F14Rik|A630086N24Rik|Gm350|PDE11A1	phosphodiesterase 11A	protein-coding	0.090000	0.726368	
mm_10769.1	chr2	24215248	24215448	+	1	NA	NA	NA	-69	NM_019450	54448	Mm.133095	NM_019450	ENSMUSG00000026984	Il1f6	Fil1|IL-1H1|IL1RP2|Il1f9|Il36a	interleukin 1 family, member 6	protein-coding	0.005000	0.452736	
mm_43090.1	chr5	124450716	124450916	+	1	NA	NA	NA	4112	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.020000	0.517413	
mm_148350.1	chr18	84680489	84680689	-	1	NA	NA	NA	1470	NM_001289531	66054	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.015000	0.452736	
mm_121285.1	chr14	105177281	105177481	+	1	NA	NA	NA	-54	NM_134077	74213	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0.080000	0.587065	
mm_9261.1	chr1	171616736	171616936	-	1	NA	NA	NA	-9426	NM_008534	17085	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	0.005000	0.427861	32(CTCTCTTAATGG,-,0.00)
mm_122707.1	chr14	52197095	52197295	-	1	NA	NA	NA	44	NM_033618	114741	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	0.115000	0.651741	
mm_97446.1	chr11	78188721	78188921	+	1	NA	NA	NA	73	NM_033475	19376	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	0.105000	0.716418	
mm_142283.1	chr17	40223822	40224022	-	1	NA	NA	NA	-15313	NM_031190	18663	Mm.717	NM_031190	ENSMUSG00000031233	Pgk2	Pgk-2|Tcp-2	phosphoglycerate kinase 2	protein-coding	0.000000	0.298507	
mm_122885.1	chr14	54946415	54946615	-	1	NA	NA	NA	2627	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.035000	0.557214	
mm_13494.1	chr2	106695501	106695701	+	1	NA	NA	NA	0	NM_029837	77015	Mm.45628	NM_029837	ENSMUSG00000016386	Mpped2	239Fb|2700082O15Rik|AV354767|AW060960	metallophosphoesterase domain containing 2	protein-coding	0.025000	0.527363	-33(CCATATATAGAC,+,0.00)
mm_109839.1	chr12	4248261	4248461	-	1	NA	NA	NA	-14067	NM_134046	52504	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.005000	0.447761	
mm_91911.1	chr10	60294521	60294721	-	1	NA	NA	NA	10160	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.587065	
mm_73681.1	chr8	111540129	111540329	+	1	NA	NA	NA	1886	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.000000	0.353234	
mm_93558.1	chr10	116473453	116473653	-	1	NA	NA	NA	-30	NM_021452	58802	Mm.440652	NM_021452	ENSMUSG00000054934	Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding	0.145000	0.751244	
mm_65585.1	chr7	27310527	27310727	-	1	NA	NA	NA	23021	NM_001113549	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.070000	0.646766	
mm_21956.1	chr2	167188701	167188901	-	1	NA	NA	NA	17	NM_008420	16500	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	0.100000	0.706468	
mm_105642.1	chr11	107080747	107080947	-	1	NA	NA	NA	51075	NM_176850	207165	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0.025000	0.477612	-55(CTCCTTAAGAGC,-,0.00)
mm_90695.1	chr10	130322751	130322951	+	1	NA	NA	NA	-1	NM_183264	67596	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	0.020000	0.482587	
mm_95721.1	chr11	54522834	54523034	+	1	NA	NA	NA	89	NM_001252496	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.095000	0.656716	
mm_85972.1	chr9	112160167	112160367	-	1	NA	NA	NA	25682	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.005000	0.368159	
mm_43060.1	chr5	124229652	124229852	+	1	NA	NA	NA	27	NR_045369	75927	Mm.410803	NR_045369	ENSMUSG00000090220	Pitpnm2os1	4930568K20Rik	phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 1	ncRNA	0.005000	0.492537	
mm_136130.1	chr16	86358094	86358294	-	1	NA	NA	NA	-457069	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0.010000	0.427861	
mm_63999.1	chr7	140132915	140133115	+	1	NA	NA	NA	-4549	NM_199301	212508	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	0.005000	0.437811	
mm_31284.1	chr4	45848887	45849087	+	1	NA	NA	NA	40	NM_028788	74152	Mm.63645	NM_028788	ENSMUSG00000028327	Stra6l	1300002K09Rik|Rbpr2	STRA6-like	protein-coding	0.035000	0.532338	
mm_6667.1	chr1	80329049	80329249	-	1	NA	NA	NA	11541	NM_001313728	26554	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.000000	0.258706	
mm_134501.1	chr16	18876536	18876736	-	1	NA	NA	NA	1	NM_010922	18100	Mm.20918	NM_010922	ENSMUSG00000022706	Mrpl40	Nlvcf	mitochondrial ribosomal protein L40	protein-coding	0.135000	0.776119	
mm_34639.1	chr4	150615145	150615345	+	1	NA	NA	NA	36929	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.015000	0.621891	
mm_10939.1	chr2	25500667	25500867	+	1	NA	NA	NA	-11	NM_013908	30839	Mm.29170	NM_013908	ENSMUSG00000015095	Fbxw5	AI159739|Fbw5	F-box and WD-40 domain protein 5	protein-coding	0.110000	0.666667	
mm_22411.1	chr2	181314214	181314414	-	1	NA	NA	NA	186	NM_009133	20262	Mm.2319	NM_009133	ENSMUSG00000027581	Stmn3	9330161A03Rik|AI604839|R75323|Sclip	stathmin-like 3	protein-coding	0.055000	0.671642	
mm_70675.1	chr8	14961718	14961918	+	1	NA	NA	NA	-49207	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.020000	0.507463	
mm_162311.1	chr1	37580052	37580252	+	1	NA	NA	NA	-39136	NM_173870	269181	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.010000	0.467662	
mm_23046.1	chr3	34826555	34826755	+	1	NA	NA	NA	54580	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA	0.005000	0.457711	
mm_169621.1	chr15	39248702	39248902	+	1	NA	NA	NA	50516	NM_053271	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.030000	0.447761	-33(TGGTATAAAAAG,-,0.00)
mm_109095.1	chr12	104861971	104862171	+	1	NA	NA	NA	3005	NR_104436	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.005000	0.507463	
mm_36030.1	chr4	57120065	57120265	-	1	NA	NA	NA	22991	NM_019427	54357	Mm.28217	NM_019427	ENSMUSG00000028434	Epb41l4b	6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2	erythrocyte membrane protein band 4.1 like 4b	protein-coding	0.020000	0.502488	
mm_92405.1	chr10	76709554	76709754	-	1	NA	NA	NA	16390	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.045000	0.592040	
mm_34317.1	chr4	141821238	141821438	+	1	NA	NA	NA	4667	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.010000	0.587065	
mm_28774.1	chr3	95928933	95929133	-	1	NA	NA	NA	-224	NM_001253758	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.050000	0.497512	
mm_142438.1	chr17	45571042	45571242	-	1	NA	NA	NA	2119	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.030000	0.502488	
mm_105973.1	chr11	115514047	115514247	-	1	NA	NA	NA	223	NM_008258	15374	Mm.1775	NM_008258	ENSMUSG00000020737	Hn1	-	hematological and neurological expressed sequence 1	protein-coding	0.095000	0.711443	
mm_81279.1	chr9	108296631	108296831	+	1	NA	NA	NA	-191	NM_001013814	434437	Mm.390225	NM_001013814	ENSMUSG00000032607	Amt	EG434437	aminomethyltransferase	protein-coding	0.010000	0.497512	
mm_147063.1	chr18	34954582	34954782	-	1	NA	NA	NA	-331	NM_010481	15526	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.090000	0.547264	
mm_132041.1	chr16	27439537	27439737	+	1	NA	NA	NA	50681	NM_001289436	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.000000	0.452736	
mm_146568.1	chr18	6510619	6510819	-	1	NA	NA	NA	5389	NM_007935	13831	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1 (Drosophila)	protein-coding	0.005000	0.378109	
mm_148819.1	chr19	6298754	6298954	+	1	NA	NA	NA	-7603	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.010000	0.452736	-67(TTCTTTTAAAGC,-,0.00),-66(TCTTTTAAAGCT,+,0.00)
mm_17412.1	chr2	27247101	27247301	-	1	NA	NA	NA	102	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.015000	0.601990	
mm_157623.1	chrX	56549614	56549814	-	1	NA	NA	NA	-108	NM_001033372	270599	Mm.424438	NM_001033372	ENSMUSG00000064016	Gm648	-	predicted gene 648	protein-coding	0.015000	0.527363	
mm_147303.1	chr18	39519288	39519488	-	1	NA	NA	NA	-32143	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.040000	0.512438	
mm_5050.1	chr1	194938742	194938942	+	1	NA	NA	NA	21	NM_001111059	12490	Mm.29798	NM_133654	ENSMUSG00000016494	Cd34	AU040960	CD34 antigen	protein-coding	0.070000	0.661692	
mm_167594.1	chr9	48495785	48495985	-	1	NA	NA	NA	542	NM_001004191	434402	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	0.060000	0.557214	
mm_75641.1	chr8	64849915	64850115	-	1	NA	NA	NA	-91	NM_178633	77113	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0.180000	0.820896	
mm_93986.1	chr10	127518829	127519029	-	1	NA	NA	NA	3515	NM_001252316	108037	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0.030000	0.532338	-62(CCTTTTAGAGCC,+,0.00)
mm_56218.1	chr6	89364402	89364602	-	1	NA	NA	NA	-1889	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.010000	0.522388	
mm_96754.1	chr11	69908912	69909112	+	1	NA	NA	NA	-5180	NM_019726	56310	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953	G protein pathway suppressor 2	protein-coding	0.025000	0.552239	
mm_92545.1	chr10	79711603	79711803	-	1	NA	NA	NA	-4931	NM_008226	15166	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	0.010000	0.482587	
mm_147349.1	chr18	43325711	43325911	-	1	NA	NA	NA	47461	NM_001136086	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.015000	0.587065	
mm_33961.1	chr4	137554331	137554531	+	1	NA	NA	NA	16145	NR_105985	102465616		NR_105985	ENSMUSG00000099134	Mir7018	Gm27606|mmu-mir-7018	microRNA 7018	ncRNA	0.005000	0.457711	
mm_2412.1	chr1	93831068	93831268	+	1	NA	NA	NA	5928	NM_001310767	98314	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	0.005000	0.363184	
mm_80098.1	chr9	70281250	70281450	+	1	NA	NA	NA	74000	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.015000	0.363184	
mm_159398.1	chr3	95559528	95559728	+	1	NA	NA	NA	-49	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.095000	0.666667	
mm_28369.1	chr3	89904322	89904522	-	1	NA	NA	NA	8774	NM_001310676	16194	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.000000	0.447761	
mm_21711.1	chr2	164593496	164593696	-	1	NA	NA	NA	-25	NM_029325	75526	Mm.159533	NM_029325	ENSMUSG00000017733	Eppin	1700024E17Rik|Spinlw1	epididymal peptidase inhibitor	protein-coding	0.020000	0.497512	
mm_4885.1	chr1	188154238	188154438	+	1	NA	NA	NA	-108500	NM_021408	22283	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Usherin|Ushrn	Usher syndrome 2A	protein-coding	0.000000	0.383085	
mm_5760.1	chr1	46892927	46893127	-	1	NA	NA	NA	-39518	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.015000	0.417910	-66(CAGCATAAAAAG,-,0.00),-35(AGGTTTAAAAAG,-,0.00)
mm_109425.1	chr12	110601292	110601492	+	1	NA	NA	NA	-3	NM_030238	13424	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0.165000	0.766169	47(GCCTTTAGGGCG,+,0.00)
mm_168268.1	chr10	93785556	93785756	+	1	NA	NA	NA	-45899	NM_183199	327799	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.025000	0.462687	
mm_1840.1	chr1	82839568	82839768	+	1	NA	NA	NA	208	NM_001347077	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.150000	0.791045	
mm_30886.1	chr4	32249325	32249525	+	1	NA	NA	NA	-168010	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.010000	0.338308	
mm_21829.1	chr2	165388180	165388380	-	1	NA	NA	NA	-21	NM_178411	228876	Mm.26316	NM_178411	ENSMUSG00000017667	Zfp334	D2Ertd535e	zinc finger protein 334	protein-coding	0.065000	0.592040	
mm_12142.1	chr2	61804420	61804620	+	1	NA	NA	NA	67	NM_009322	21375	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.010000	0.393035	
mm_116562.1	chr13	46929662	46929862	-	1	NA	NA	NA	-44	NM_010617	16553	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	0.220000	0.885572	
mm_105229.1	chr11	102305959	102306159	-	1	NA	NA	NA	-9430	NM_001098837	217218	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0.035000	0.522388	
mm_103683.1	chr11	79339197	79339397	-	1	NA	NA	NA	-595	NM_010897	18015	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0.070000	0.597015	
mm_74066.1	chr8	122424857	122425057	+	1	NA	NA	NA	2872	NM_145834	234836	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.030000	0.601990	
mm_32038.1	chr4	95850663	95850863	+	1	NA	NA	NA	116272	NR_045777	319247	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0.000000	0.308458	
mm_59062.1	chr7	19416647	19416847	+	1	NA	NA	NA	4670	NR_073014	100503495	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	0.030000	0.587065	
mm_7602.1	chr1	126092415	126092615	-	1	NA	NA	NA	-179587	NM_001311089	72585	Mm.490405	NM_145100	ENSMUSG00000026344	Lypd1	2700050C12Rik|AI853408|C530008O16Rik|Lynx2|Lypdc1	Ly6/Plaur domain containing 1	protein-coding	0.000000	0.402985	
mm_8037.1	chr1	135180790	135180990	-	1	NA	NA	NA	-13209	NM_134438	171469	Mm.272290	NM_134438	ENSMUSG00000026424	Gpr37l1	AW047233|CAG-18|D0Kist8	G protein-coupled receptor 37-like 1	protein-coding	0.015000	0.497512	
mm_71563.1	chr8	53511617	53511817	+	1	NA	NA	NA	15	NM_001005847	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.080000	0.582090	
mm_98265.1	chr11	88973822	88974022	+	1	NA	NA	NA	-13	NM_016706	12812	Mm.268004	NM_016706	ENSMUSG00000033983	Coil	C79982|Cln80|p80|p80-coilin	coilin	protein-coding	0.105000	0.671642	
mm_92507.1	chr10	78405016	78405216	-	1	NA	NA	NA	3429	NR_105872	102465547		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	0.025000	0.492537	
mm_80886.1	chr9	99246972	99247172	+	1	NA	NA	NA	3604	NM_023873	68121	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	0.025000	0.492537	
mm_53675.1	chr6	141866286	141866486	+	1	NA	NA	NA	-10215	NM_030687	28250	Mm.255586	NM_030687	ENSMUSG00000030237	Slco1a4	AI785519|Oatp1a4|Oatp2|Slc21a5	solute carrier organic anion transporter family, member 1a4	protein-coding	0.020000	0.422886	
mm_103861.1	chr11	83298847	83299047	-	1	NA	NA	NA	30	NM_134025	103737	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding	0.100000	0.621891	
mm_10740.1	chr2	23069098	23069298	+	1	NA	NA	NA	126	NM_001102438	74159	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.065000	0.651741	
mm_73141.1	chr8	94977285	94977485	+	1	NA	NA	NA	276	NM_001198894	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.035000	0.587065	
mm_31861.1	chr4	79768670	79768870	+	1	NA	NA	NA	-1065443	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.000000	0.318408	
mm_114876.1	chr13	94169535	94169735	+	1	NA	NA	NA	111839	NM_172589	218454	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.015000	0.532338	
mm_17758.1	chr2	32775309	32775509	-	1	NA	NA	NA	-70	NM_001290566	338348	Mm.475130	NM_177384	ENSMUSG00000039021	Ttc16	1200002K10Rik	tetratricopeptide repeat domain 16	protein-coding	0.025000	0.562189	
mm_142818.1	chr17	51747609	51747809	-	1	NA	NA	NA	64345	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.020000	0.427861	
mm_97581.1	chr11	78944691	78944891	+	1	NA	NA	NA	19500	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.020000	0.582090	
mm_110264.1	chr12	31944431	31944631	-	1	NA	NA	NA	6004	NM_177993	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.000000	0.293532	
mm_9383.1	chr1	172213024	172213224	-	1	NA	NA	NA	-6320	NM_011063	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.015000	0.497512	
mm_157113.1	chrX	9438200	9438400	-	1	NA	NA	NA	31024	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.030000	0.492537	
mm_163476.1	chr12	104956161	104956361	-	1	NA	NA	NA	42416	NM_001042699	212073	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.000000	0.348259	
mm_63959.1	chr7	139943665	139943865	+	1	NA	NA	NA	-91	NM_009482	22286	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	0.065000	0.651741	
mm_33417.1	chr4	129984686	129984886	+	1	NA	NA	NA	-84	NM_001290714	230775	Mm.262241	NM_173071	ENSMUSG00000028782	Adgrb2	Bai2	adhesion G protein-coupled receptor B2	protein-coding	0.175000	0.850746	
mm_30866.1	chr4	32015416	32015616	+	1	NA	NA	NA	51409	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.005000	0.462687	
mm_154577.1	chrX	7571088	7571288	+	1	NA	NA	NA	-2412	NR_029473	78185	Mm.160055	NR_029473	ENSMUSG00000039545	Ppp1r3fos	4930524L23Rik	protein phosphatase 1, regulatory subunit 3F, opposite strand	ncRNA	0.015000	0.452736	
mm_104563.1	chr11	96829866	96830066	-	1	NA	NA	NA	2	NM_008686	18023	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	0.095000	0.676617	
mm_129822.1	chr15	83052781	83052981	-	1	NA	NA	NA	-19484	NM_001271411	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.005000	0.552239	
mm_106435.1	chr11	119491147	119491347	-	1	NA	NA	NA	-100	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.095000	0.666667	
mm_106812.1	chr12	7597835	7598035	+	1	NA	NA	NA	-217605	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA	0.005000	0.373134	
mm_74286.1	chr8	125734160	125734360	+	1	NA	NA	NA	57	NM_001310688	66566	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.100000	0.716418	
mm_31472.1	chr4	49650001	49650201	+	1	NA	NA	NA	18041	NM_182999	109331	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0.040000	0.507463	
mm_88610.1	chr10	79824503	79824703	+	1	NA	NA	NA	3582	NM_030218	78906	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.015000	0.532338	
mm_55957.1	chr6	85374592	85374792	-	1	NA	NA	NA	-58	NM_001003955	52055	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0.130000	0.781095	
mm_66871.1	chr7	57387097	57387297	-	1	NA	NA	NA	-75	NR_033504	791383	Mm.403104	NR_033504	ENSMUSG00000055048	Gm9962	ENSMUSG00000055048	predicted gene 9962	ncRNA	0.085000	0.686567	
mm_15920.1	chr2	165066572	165066772	+	1	NA	NA	NA	11036	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.010000	0.542289	
mm_156725.1	chrX	159865242	159865442	+	1	NA	NA	NA	24874	NM_001135728	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.025000	0.412935	84(CCTTATATACCT,+,0.00)
mm_74998.1	chr8	27227439	27227639	-	1	NA	NA	NA	2049	NM_013462	11556	Mm.278475	NM_013462	ENSMUSG00000031489	Adrb3	Adrb-3	adrenergic receptor, beta 3	protein-coding	0.095000	0.686567	
mm_31029.1	chr4	40876102	40876302	+	1	NA	NA	NA	-21665	NM_022305	14595	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0.025000	0.477612	
mm_94337.1	chr11	4704524	4704724	+	1	NA	NA	NA	-54	NM_026015	67178	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	0.055000	0.527363	
mm_127815.1	chr15	5108271	5108471	-	1	NA	NA	NA	162	NM_001163138	239319	Mm.31252	NM_001163138	ENSMUSG00000041849	Card6	D730008L15	caspase recruitment domain family, member 6	protein-coding	0.025000	0.412935	
mm_72319.1	chr8	78390866	78391066	+	1	NA	NA	NA	45686	NM_138944	18997	Mm.234261	NM_138944	ENSMUSG00000031688	Pou4f2	Brn-3.2|Brn-3b|Brn3b|Pou4f-rs1|mBrn3-3R	POU domain, class 4, transcription factor 2	protein-coding	0.020000	0.547264	
mm_60819.1	chr7	45705200	45705400	+	1	NA	NA	NA	53	NM_016974	13170	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.035000	0.587065	
mm_27537.1	chr3	57575810	57576010	-	1	NA	NA	NA	0	NM_001168281	97064	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0.070000	0.666667	
mm_134388.1	chr16	17288465	17288665	-	1	NA	NA	NA	12265	NM_177473	224019	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	0.030000	0.467662	
mm_108875.1	chr12	99645456	99645656	+	1	NA	NA	NA	-17582	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.075000	0.542289	-40(AACTTTAAATGG,-,0.00)
mm_144264.1	chr18	11053167	11053367	+	1	NA	NA	NA	-700	NR_105023	68434	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0.050000	0.641791	
mm_104111.1	chr11	86719451	86719651	-	1	NA	NA	NA	35470	NM_001098810	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.040000	0.492537	
mm_142311.1	chr17	42876324	42876524	-	1	NA	NA	NA	0	NM_009847	12488	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.140000	0.796020	
mm_132100.1	chr16	31422198	31422398	+	1	NA	NA	NA	1	NM_175177	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.035000	0.447761	
mm_123033.1	chr14	55524880	55525080	-	1	NA	NA	NA	1	NM_001271916	18185	Mm.20422	NM_008736	ENSMUSG00000040632	Nrl	D14H14S46E	neural retina leucine zipper gene	protein-coding	0.035000	0.557214	-50(AGCTCTAAGAGG,-,0.00),-49(GCTCTAAGAGGC,+,0.00)
mm_28000.1	chr3	82903872	82904072	-	1	NA	NA	NA	2	NM_023624	79235	Mm.33921	NM_023624	ENSMUSG00000028003	Lrat	1300010A18Rik|AI449251	lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)	protein-coding	0.070000	0.631841	-36(ACCTCTATAAGA,-,0.00),-34(CTCTATAAGAGC,-,0.00)
mm_117059.1	chr13	58402434	58402634	-	1	NA	NA	NA	-22	NM_001301344	15387	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.100000	0.646766	
mm_76697.1	chr8	94180222	94180422	-	1	NA	NA	NA	1233	NM_013602	17748	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.035000	0.467662	
mm_153070.1	chr19	32238929	32239129	-	1	NA	NA	NA	-28016	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.005000	0.393035	
mm_100968.1	chr11	6660165	6660365	-	1	NA	NA	NA	-29	NR_028586	100041311	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	OTTMUSG00000005125|OTTMUSG00000005127	predicted gene 11978	pseudo	0.010000	0.502488	
mm_31400.1	chr4	48045873	48046073	+	1	NA	NA	NA	668	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.055000	0.552239	
mm_28062.1	chr3	84259579	84259779	-	1	NA	NA	NA	100	NM_001271727	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.090000	0.601990	
mm_165492.1	chr2	164777735	164777935	-	1	NA	NA	NA	1899	NM_009394	21925	Mm.1716	NM_009394	ENSMUSG00000017300	Tnnc2	Tncs	troponin C2, fast	protein-coding	0.040000	0.592040	
mm_159321.1	chr3	15574923	15575123	-	1	NA	NA	NA	42	NM_001173460	668101	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	0.005000	0.412935	
mm_166068.1	chr4	135069506	135069706	-	1	NA	NA	NA	-51039	NM_019732	12399	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.010000	0.527363	
mm_27509.1	chr3	55788647	55788847	-	1	NA	NA	NA	6237	NM_010750	17116	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.000000	0.432836	
mm_123170.1	chr14	57398398	57398598	-	1	NA	NA	NA	-15	NM_030004	68631	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.075000	0.656716	
mm_84998.1	chr9	86798781	86798981	-	1	NA	NA	NA	55248	NM_178738	244954	Mm.257629	NM_178738	ENSMUSG00000033491	Prss35	6030424L22Rik|P3D9	protease, serine 35	protein-coding	0.025000	0.547264	
mm_113275.1	chr13	29745572	29745772	+	1	NA	NA	NA	110001	NR_131896	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0.010000	0.477612	-33(GGCTTTAAGAGA,-,0.00),-32(GCTTTAAGAGAG,+,0.00)
mm_56399.1	chr6	96166135	96166335	-	1	NA	NA	NA	-30	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo	0.045000	0.527363	
mm_62433.1	chr7	101361921	101362121	+	1	NA	NA	NA	13952	NM_001040111	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.010000	0.562189	
mm_60549.1	chr7	44480714	44480914	+	1	NA	NA	NA	-3703	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.398010	
mm_143132.1	chr17	57215787	57215987	-	1	NA	NA	NA	1341	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.040000	0.572139	
mm_96143.1	chr11	61022190	61022390	+	1	NA	NA	NA	-274	NM_001267593	16515	Mm.4970	NM_010603	ENSMUSG00000042529	Kcnj12	IRK-2|IRK2|Kir2.2|MB-IRK2	potassium inwardly-rectifying channel, subfamily J, member 12	protein-coding	0.110000	0.726368	
mm_26003.1	chr3	135242148	135242348	+	1	NA	NA	NA	29685	NM_173762	229841	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0.005000	0.378109	
mm_28194.1	chr3	88143119	88143319	-	1	NA	NA	NA	847	NM_001310593	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.035000	0.631841	
mm_72126.1	chr8	71692816	71693016	+	1	NA	NA	NA	3664	NM_013564	16336	Mm.476857	NM_013564	ENSMUSG00000079019	Insl3	Rlf|Rlnl	insulin-like 3	protein-coding	0.105000	0.651741	
mm_34358.1	chr4	144892466	144892666	+	1	NA	NA	NA	-261	NM_001172424	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.060000	0.507463	
mm_55912.1	chr6	83775478	83775678	-	1	NA	NA	NA	234	NM_009357	21766	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	0.095000	0.681592	
mm_16335.1	chr2	174329954	174330154	+	1	NA	NA	NA	-16	NM_201616	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.155000	0.810945	
mm_115239.1	chr13	109951307	109951507	+	1	NA	NA	NA	47598	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.015000	0.398010	
mm_155962.1	chrX	106015665	106015865	+	1	NA	NA	NA	65	NM_025379	66142	Mm.197728	NM_025379	ENSMUSG00000031231	Cox7b	1100001F07Rik|1110004F07Rik|C80563	cytochrome c oxidase subunit VIIb	protein-coding	0.050000	0.497512	
mm_142926.1	chr17	53846252	53846452	-	1	NA	NA	NA	-394	NM_026935	69083	Mm.19320	NM_026935	ENSMUSG00000023122	Sult1c2	1810008N17Rik|ST1C1|ST1C2|Sult1c1	sulfotransferase family, cytosolic, 1C, member 2	protein-coding	0.015000	0.412935	
mm_63709.1	chr7	130692417	130692617	+	1	NA	NA	NA	-39	NM_001347637	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.035000	0.582090	69(GGCTTTAAGAGA,-,0.00),70(GCTTTAAGAGAA,+,0.00)
mm_54187.1	chr6	24104048	24104248	-	1	NA	NA	NA	63944	NM_019481	55961	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0.005000	0.432836	-23(CCTTCTATAAGG,-,0.00)
mm_102527.1	chr11	60931781	60931981	-	1	NA	NA	NA	-14	NR_027800	24082	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	0.060000	0.656716	
mm_68441.1	chr7	109986087	109986287	-	1	NA	NA	NA	43	NM_153525	233724	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	0.080000	0.626866	
mm_69510.1	chr7	134413777	134413977	-	1	NA	NA	NA	-37049	NM_001081331	71007	Mm.334285	NM_001081331	ENSMUSG00000030994	D7Ertd443e	4933400E14Rik|FATS|Gm497	DNA segment, Chr 7, ERATO Doi 443, expressed	protein-coding	0.010000	0.547264	
mm_108980.1	chr12	102743697	102743897	+	1	NA	NA	NA	37	NM_177140	320351	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	0.100000	0.731343	
mm_32960.1	chr4	119814228	119814428	+	1	NA	NA	NA	-350	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.015000	0.417910	-86(ATCTTTAAAAGG,-,0.00),-85(TCTTTAAAAGGT,+,0.00),-68(CCCCTTAAAAAA,-,0.00)
mm_83512.1	chr9	45985290	45985490	-	1	NA	NA	NA	-519	NM_008775	18475	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0.015000	0.472637	
mm_156520.1	chrX	150589942	150590142	+	1	NA	NA	NA	121	NM_008824	18639	Mm.249131	NM_008824	ENSMUSG00000025271	Pfkfb1	PFK/FBPase 1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	protein-coding	0.020000	0.477612	27(GCCTCTAAGAGA,-,0.00)
mm_51444.1	chr6	80173985	80174185	+	1	NA	NA	NA	154442	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.000000	0.462687	
mm_124654.1	chr15	5237388	5237588	+	1	NA	NA	NA	6699	NM_001136079	19219	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.030000	0.487562	
mm_45993.1	chr5	90506473	90506673	-	1	NA	NA	NA	-12376	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.010000	0.452736	
mm_163933.1	chr14	48250475	48250675	+	1	NA	NA	NA	51859	NR_003630	624367	Mm.445185	NM_001037921	ENSMUSG00000063885	Gm6498	EG624367	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.055000	0.532338	
mm_90121.1	chr10	117280622	117280822	+	1	NA	NA	NA	1550	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.020000	0.452736	
mm_40082.1	chr5	34462090	34462290	+	1	NA	NA	NA	51789	NM_139064	231130	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0.025000	0.557214	
mm_107448.1	chr12	36676654	36676854	+	1	NA	NA	NA	-139451	NR_039558	100628578		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA	0.005000	0.393035	
mm_168086.1	chr10	126141880	126142080	+	1	NA	NA	NA	175761	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0.030000	0.447761	
mm_152721.1	chr19	18567939	18568139	-	1	NA	NA	NA	63774	NM_017375	20409	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.005000	0.497512	0(CTCTCTTTAAGC,-,0.00)
mm_10550.1	chr2	16675149	16675349	+	1	NA	NA	NA	318945	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.000000	0.243781	
mm_60854.1	chr7	45833507	45833707	+	1	NA	NA	NA	-2818	NM_153419	101612	Mm.274847	NM_153419	ENSMUSG00000053801	Grwd1	A301|AI504353|Grwd|Wdr28	glutamate-rich WD repeat containing 1	protein-coding	0.165000	0.805970	
mm_35270.1	chr4	19901085	19901285	-	1	NA	NA	NA	21381	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.005000	0.353234	
mm_95722.1	chr11	54522864	54523064	+	1	NA	NA	NA	119	NM_001252496	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.085000	0.656716	
mm_19981.1	chr2	118479562	118479762	-	1	NA	NA	NA	34	NM_009273	20813	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	0.130000	0.676617	
mm_58118.1	chr6	138658353	138658553	-	1	NA	NA	NA	-9	NM_015777	50540	Mm.84043	NM_015777	ENSMUSG00000046717	Igbp1b	alpha4-b	immunoglobulin (CD79A) binding protein 1b	protein-coding	0.045000	0.577114	-34(GTCTCTATAAGC,-,0.00)
mm_91904.1	chr10	60219180	60219380	-	1	NA	NA	NA	-20	NM_016803	53374	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	0.080000	0.711443	
mm_40878.1	chr5	74386334	74386534	+	1	NA	NA	NA	145308	NM_178672	212986	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	0.025000	0.522388	
mm_37736.1	chr4	129575249	129575449	-	1	NA	NA	NA	-1708	NM_001162433	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.005000	0.562189	
mm_118444.1	chr14	8118117	8118317	+	1	NA	NA	NA	20004	NM_178279	218699	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|MONaKA	PX domain containing serine/threonine kinase	protein-coding	0.005000	0.492537	
mm_104.1	chr1	9547975	9548175	+	1	NA	NA	NA	29	NR_027664	76187	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8	alcohol dehydrogenase, iron containing, 1	protein-coding	0.040000	0.582090	
mm_91329.1	chr10	25246785	25246985	-	1	NA	NA	NA	-46715	NM_001347460	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.010000	0.358209	
mm_149209.1	chr19	9982603	9982803	+	1	NA	NA	NA	57	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.130000	0.701493	
mm_101583.1	chr11	34477796	34477996	-	1	NA	NA	NA	163074	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.005000	0.472637	
mm_1733.1	chr1	75385473	75385673	+	1	NA	NA	NA	-37	NM_001085370	11790	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0.025000	0.611940	
mm_87721.1	chr10	60106181	60106381	+	1	NA	NA	NA	24	NM_052994	94214	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.040000	0.577114	
mm_58509.1	chr7	4119476	4119676	+	1	NA	NA	NA	46	NM_001001454	57776	Mm.29729	NM_021324	ENSMUSG00000030428	Ttyh1	4930459B04Rik|6330408P11Rik|TTY1|mTTY1|tty	tweety family member 1	protein-coding	0.100000	0.796020	
mm_170551.1	chr19	40957405	40957605	+	1	NA	NA	NA	37030	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.035000	0.497512	
mm_2046.1	chr1	87326949	87327149	+	1	NA	NA	NA	51	NM_001110212	227331	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	0.110000	0.696517	
mm_138554.1	chr17	35265701	35265901	+	1	NA	NA	NA	2678	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.000000	0.467662	
mm_7715.1	chr1	130629520	130629720	-	1	NA	NA	NA	-14	NM_009581	22789	Mm.4644	NM_009581	ENSMUSG00000042554	Zp3r	AV264399|SP56	zona pellucida 3 receptor	protein-coding	0.010000	0.427861	
mm_144334.1	chr18	13972925	13973125	+	1	NA	NA	NA	-292	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.055000	0.457711	
mm_128141.1	chr15	31530728	31530928	-	1	NA	NA	NA	209	NM_172606	223455	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0.165000	0.791045	
mm_126683.1	chr15	84766778	84766978	+	1	NA	NA	NA	-46612	NR_040347	328576	Mm.400211	NR_040347		Gm20556	A430075N02	predicted gene, 20556	ncRNA	0.030000	0.592040	50(CACCCTAAAAGA,-,0.00)
mm_93664.1	chr10	117695331	117695531	-	1	NA	NA	NA	15327	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.005000	0.368159	
mm_44938.1	chr5	36397982	36398182	-	1	NA	NA	NA	57	NM_030889	81840	Mm.34113	NM_030889	ENSMUSG00000029093	Sorcs2	N28137|mKIAA1329	sortilin-related VPS10 domain containing receptor 2	protein-coding	0.130000	0.741294	
mm_94942.1	chr11	29715597	29715797	+	1	NA	NA	NA	-2866	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.000000	0.313433	
mm_96694.1	chr11	69601083	69601283	+	1	NA	NA	NA	4777	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.015000	0.537313	
mm_41350.1	chr5	90503575	90503775	+	1	NA	NA	NA	12961	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.005000	0.398010	
mm_115964.1	chr13	23914883	23915083	-	1	NA	NA	NA	24	NM_177016	319848	Mm.97959	NM_177016	ENSMUSG00000021336	Slc17a4	9130214H05Rik	solute carrier family 17 (sodium phosphate), member 4	protein-coding	0.020000	0.462687	
mm_107888.1	chr12	70455299	70455499	+	1	NA	NA	NA	2245	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0.030000	0.492537	
mm_161412.1	chr15	12592677	12592877	-	1	NA	NA	NA	-221	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.015000	0.497512	
mm_99632.1	chr11	105178629	105178829	+	1	NA	NA	NA	-78	NM_001294331	24086	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	0.005000	0.472637	-89(GGCCCTTTAAAG,-,0.00),-88(GCCCTTTAAAGG,-,0.00),-87(CCCTTTAAAGGA,+,0.00),-87(CCCTTTAAAGGA,-,0.00),-86(CCTTTAAAGGAT,+,0.00)
mm_113626.1	chr13	41677088	41677288	+	1	NA	NA	NA	26426	NM_001145878	328231	Mm.227476	NM_177808	ENSMUSG00000054258	Gm5082	A030008J09|EG328231	predicted gene 5082	protein-coding	0.010000	0.407960	
mm_76253.1	chr8	83699051	83699251	-	1	NA	NA	NA	28	NM_177262	320795	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	0.150000	0.845771	
mm_12433.1	chr2	70661391	70661591	+	1	NA	NA	NA	-18	NR_027343	70231	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|ENSMUSG00000075299|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.150000	0.731343	
mm_155687.1	chrX	93968562	93968762	+	1	NA	NA	NA	6	NR_028320	385493	Mm.328014	NM_001033480	ENSMUSG00000081044	AU015836	-	expressed sequence AU015836	ncRNA	0.045000	0.597015	
mm_163068.1	chr11	67250270	67250470	+	1	NA	NA	NA	12558	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.010000	0.447761	
mm_50236.1	chr6	42351204	42351404	+	1	NA	NA	NA	1476	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.015000	0.567164	
mm_79528.1	chr9	57697514	57697714	+	1	NA	NA	NA	1	NM_001136059	13076	Mm.14089	NM_009992	ENSMUSG00000032315	Cyp1a1	AHH|AHRR|CP11|Cyp1a2|P450-1	cytochrome P450, family 1, subfamily a, polypeptide 1	protein-coding	0.015000	0.572139	
mm_109965.1	chr12	12546530	12546730	-	1	NA	NA	NA	123287	NR_136889	102637952	Mm.421393	NR_136889		Gm34637	-	predicted gene, 34637	ncRNA	0.005000	0.432836	-35(GTCTTTAAAGGT,-,0.00)
mm_9420.1	chr1	172329222	172329422	-	1	NA	NA	NA	-59	NM_008429	16524	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	0.025000	0.562189	
mm_137623.1	chr17	28300125	28300325	+	1	NA	NA	NA	-13305	NR_028297	72775	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	0.015000	0.557214	-19(CAGCCTAAAAGC,-,0.00)
mm_2084.1	chr1	87676195	87676395	+	1	NA	NA	NA	55983	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.010000	0.517413	
mm_6748.1	chr1	83408005	83408205	-	1	NA	NA	NA	95	NM_172430	77629	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	0.060000	0.626866	
mm_117002.1	chr13	57455062	57455262	-	1	NA	NA	NA	453170	NM_009262	20745	Mm.379020	NM_009262	ENSMUSG00000056222	Spock1	Spock|Ticn1|testican	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	protein-coding	0.020000	0.562189	
mm_133060.1	chr16	58461713	58461913	+	1	NA	NA	NA	53278	NM_028523	73379	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.010000	0.383085	
mm_121017.1	chr14	79539786	79539986	+	1	NA	NA	NA	24212	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.015000	0.407960	
mm_126605.1	chr15	82554989	82555189	+	1	NA	NA	NA	-9	NM_201360	380997	Mm.482248	NM_201360	ENSMUSG00000096852	Cyp2d12	9030605E09Rik	cytochrome P450, family 2, subfamily d, polypeptide 12	protein-coding	0.005000	0.527363	-33(TCCTTTATAAGG,-,0.00),-31(CTTTATAAGGCA,+,0.00)
mm_35563.1	chr4	41639876	41640076	-	1	NA	NA	NA	326	NM_027147	69638	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.120000	0.761194	
mm_14964.1	chr2	152081513	152081713	+	1	NA	NA	NA	84	NM_001160410	545474	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.040000	0.587065	
mm_140282.1	chr17	85028276	85028476	+	1	NA	NA	NA	29	NM_009205	20532	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	0.010000	0.452736	
mm_121551.1	chr14	122475402	122475602	+	1	NA	NA	NA	118	NM_009574	22772	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0.130000	0.721393	
mm_105354.1	chr11	103028096	103028296	-	1	NA	NA	NA	-366	NM_008707	18107	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.040000	0.502488	
mm_44520.1	chr5	24383515	24383715	-	1	NA	NA	NA	8528	NM_001002897	213948	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0.065000	0.587065	
mm_94344.1	chr11	4848668	4848868	+	1	NA	NA	NA	776	NM_001252250	18016	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	0.070000	0.577114	
mm_28970.1	chr3	101012036	101012236	-	1	NA	NA	NA	17359	NM_001167906	630146	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0.035000	0.537313	
mm_116978.1	chr13	56252078	56252278	-	1	NA	NA	NA	-15	NM_010896	18014	Mm.266665	NM_010896	ENSMUSG00000048904	Neurog1	AKA|Math4C|Neurod3|bHLHa6|ngn1	neurogenin 1	protein-coding	0.100000	0.706468	
mm_153182.1	chr19	34498880	34499080	-	1	NA	NA	NA	-23845	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.015000	0.477612	
mm_121519.1	chr14	122104916	122105116	+	1	NA	NA	NA	1958	NR_015586	319727	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	0.080000	0.597015	
mm_73792.1	chr8	117256763	117256963	+	1	NA	NA	NA	-156	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.180000	0.810945	
mm_108592.1	chr12	85374009	85374209	+	1	NA	NA	NA	608	NM_026775	68581	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.045000	0.492537	
mm_25751.1	chr3	123269599	123269799	+	1	NA	NA	NA	2203	NM_027135	69608	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	0.015000	0.462687	
mm_155950.1	chrX	105079990	105080190	+	1	NA	NA	NA	334	NM_026312	67683	Mm.273405	NM_026312	ENSMUSG00000031226	Pbdc1	2610029G23Rik	polysaccharide biosynthesis domain containing 1	protein-coding	0.035000	0.432836	
mm_8972.1	chr1	165236886	165237086	-	1	NA	NA	NA	-28	NM_145513	226591	Mm.21520	NM_145513	ENSMUSG00000040843	Tiprl	1810011K17Rik	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	protein-coding	0.120000	0.701493	
mm_164414.1	chr16	38396420	38396620	+	1	NA	NA	NA	34330	NM_022318	64082	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.040000	0.537313	
mm_61095.1	chr7	51878886	51879086	+	1	NA	NA	NA	19	NM_001330607	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.015000	0.442786	
mm_173296.1	chrY	43038979	43039179	-	1	NA	NA	NA	108756	NR_038299	100041346	Mm.426191	NR_038299	ENSMUSG00000101005	Gm20871	-	Sycp3 like Y-linked pseudogene	pseudo	0.070000	0.547264	-32(CCCTATAAAAAG,-,0.00)
mm_71762.1	chr8	66397150	66397350	+	1	NA	NA	NA	10949	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.005000	0.358209	
mm_52374.1	chr6	113077361	113077561	+	1	NA	NA	NA	-178	NM_028385	72895	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0.125000	0.781095	
mm_104039.1	chr11	86304597	86304797	-	1	NA	NA	NA	-47129	NM_027421	70422	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0.005000	0.298507	-41(GAGCCTTAAAGC,-,0.00)
mm_78062.1	chr9	15045487	15045687	+	1	NA	NA	NA	-109	NM_019482	55991	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.065000	0.601990	
mm_133013.1	chr16	56127321	56127521	+	1	NA	NA	NA	51941	NM_001304503	66315	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0.010000	0.422886	
mm_171450.1	chr4	145432301	145432501	+	1	NA	NA	NA	-31809	NR_002888	545700	Mm.389595	NR_002888	ENSMUSG00000052912	Smarca5-ps	9230115A19Rik|OTTMUSG00000011029	SWI/SNF related, matrix associated, actin depenent ragulator of chromatin, subfamily a, member 5, pseudogene	pseudo	0.020000	0.482587	
mm_119374.1	chr14	41122804	41123004	+	1	NA	NA	NA	-8884	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.000000	0.462687	
mm_62557.1	chr7	103460866	103461066	+	1	NA	NA	NA	-9075	NM_146756	258751	Mm.377673	NM_146756	ENSMUSG00000073948	Olfr608	MOR26-3	olfactory receptor 608	protein-coding	0.005000	0.502488	
mm_19562.1	chr2	99573822	99574022	-	1	NA	NA	NA	-2050826	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.005000	0.273632	
mm_78460.1	chr9	32376884	32377084	+	1	NA	NA	NA	4566	NM_019659	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.010000	0.383085	
mm_137495.1	chr17	26952770	26952970	+	1	NA	NA	NA	-4751	NR_037244	100526534		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0.005000	0.537313	
mm_131258.1	chr16	10788227	10788427	+	1	NA	NA	NA	328	NM_013694	21959	Mm.206798	NM_013694	ENSMUSG00000043050	Tnp2	TP2|Tp-2	transition protein 2	protein-coding	0.045000	0.587065	
mm_19724.1	chr2	104491234	104491434	-	1	NA	NA	NA	3155	NM_010434	15259	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.000000	0.308458	
mm_57786.1	chr6	129269493	129269693	-	1	NA	NA	NA	5776	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.010000	0.373134	
mm_51188.1	chr6	70965829	70966029	+	1	NA	NA	NA	9323	NM_001101464	232077	Mm.297656	NM_001101464	ENSMUSG00000055874	Foxi3	-	forkhead box I3	protein-coding	0.020000	0.537313	
mm_58510.1	chr7	4119504	4119704	+	1	NA	NA	NA	74	NM_001001454	57776	Mm.29729	NM_021324	ENSMUSG00000030428	Ttyh1	4930459B04Rik|6330408P11Rik|TTY1|mTTY1|tty	tweety family member 1	protein-coding	0.095000	0.786070	
mm_60559.1	chr7	44481200	44481400	+	1	NA	NA	NA	-3217	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.462687	
mm_58354.1	chr6	147675608	147675808	-	1	NA	NA	NA	-14533	NR_033636	100039727	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761|OTTMUSG00000026044	RIKEN cDNA 1700049E15 gene	ncRNA	0.000000	0.477612	
mm_52667.1	chr6	117906810	117907010	+	1	NA	NA	NA	128	NM_133834	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.105000	0.721393	
mm_150854.1	chr19	45005570	45005770	+	1	NA	NA	NA	772	NM_053164	94067	Mm.44174	NM_053164	ENSMUSG00000025208	Mrpl43	4930442D21Rik|bMRP36a	mitochondrial ribosomal protein L43	protein-coding	0.050000	0.572139	
mm_90138.1	chr10	117982805	117983005	+	1	NA	NA	NA	57446	NR_045342	71067	Mm.410793	NR_045342		4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0.010000	0.432836	
mm_90432.1	chr10	127596129	127596329	+	1	NA	NA	NA	24919	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.025000	0.502488	
mm_44832.1	chr5	33997485	33997685	-	1	NA	NA	NA	1601	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.095000	0.641791	
mm_112351.1	chr12	118301344	118301544	-	1	NA	NA	NA	-4	NM_001166385	20688	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0.140000	0.766169	
mm_13002.1	chr2	90890157	90890357	+	1	NA	NA	NA	4471	NM_026161	67445	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0.120000	0.666667	
mm_94975.1	chr11	31545781	31545981	+	1	NA	NA	NA	125981	NM_001024919	69556	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.030000	0.557214	
mm_53123.1	chr6	125122387	125122587	+	1	NA	NA	NA	-9396	NM_138747	110109	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	0.020000	0.522388	
mm_98414.1	chr11	94507394	94507594	+	1	NA	NA	NA	-7520	NM_027984	71889	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	0.015000	0.472637	
mm_100792.1	chr11	4939617	4939817	-	1	NA	NA	NA	-7804	NM_001243043	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.010000	0.507463	
mm_10072.1	chr1	194774799	194774999	-	1	NA	NA	NA	155070	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	0.000000	0.517413	
mm_31316.1	chr4	46138444	46138644	+	1	NA	NA	NA	33	NM_001033201	433702	Mm.389536	NM_001033201	ENSMUSG00000028330	Ncbp1	AU014645|AW538051|CBP80	nuclear cap binding protein subunit 1	protein-coding	0.130000	0.696517	
mm_173156.1	chrX	35812715	35812915	+	1	NA	NA	NA	-76017	NM_001009947	75974	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	0.000000	0.432836	
mm_112475.1	chr13	5868547	5868747	+	1	NA	NA	NA	7158	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.015000	0.412935	
mm_106140.1	chr11	116494488	116494688	-	1	NA	NA	NA	-4242	NM_026364	67763	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	0.025000	0.557214	
mm_70941.1	chr8	26119265	26119465	+	1	NA	NA	NA	-15	NM_029965	77733	Mm.291906	NM_029965	ENSMUSG00000013878	Rnf170	6720407G21Rik|AI481227	ring finger protein 170	protein-coding	0.165000	0.796020	
mm_116458.1	chr13	43304039	43304239	-	1	NA	NA	NA	33	NM_001033399	328232	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	0.135000	0.736318	
mm_50585.1	chr6	49056630	49056830	+	1	NA	NA	NA	-17065	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.010000	0.437811	
mm_18875.1	chr2	76259123	76259323	-	1	NA	NA	NA	79430	NM_001081033	241489	Mm.246613	NM_001081033	ENSMUSG00000075270	Pde11a	6330414F14Rik|A630086N24Rik|Gm350|PDE11A1	phosphodiesterase 11A	protein-coding	0.000000	0.447761	
mm_162376.1	chr1	70220649	70220849	+	1	NA	NA	NA	269134	NM_025728	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	0.005000	0.313433	
mm_158246.1	chrX	107397221	107397421	-	1	NA	NA	NA	6039	NM_008409	16431	Mm.193	NM_008409	ENSMUSG00000031239	Itm2a	AW108051|Bricd2a|E25|Itm2	integral membrane protein 2A	protein-coding	0.005000	0.363184	
mm_172594.1	chr8	129279161	129279361	-	1	NA	NA	NA	15631	NR_144501	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	0.040000	0.547264	
mm_132488.1	chr16	36924560	36924760	+	1	NA	NA	NA	-10323	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.020000	0.507463	
mm_126847.1	chr15	89088992	89089192	+	1	NA	NA	NA	-15	NM_027905	223776	Mm.44763	NM_027905	ENSMUSG00000035757	Selenoo	1300018J18Rik|Selo	selenoprotein O	protein-coding	0.125000	0.691542	
mm_4524.1	chr1	175631999	175632199	+	1	NA	NA	NA	-94	NM_133809	98256	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	0.025000	0.437811	
mm_67283.1	chr7	78623233	78623433	-	1	NA	NA	NA	-45495	NM_182809	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	0.025000	0.512438	
mm_20643.1	chr2	132029097	132029297	-	1	NA	NA	NA	791	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.080000	0.606965	
mm_87469.1	chr10	51491419	51491619	+	1	NA	NA	NA	621	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.010000	0.477612	22(CTGTATAAAGAG,-,0.00)
mm_23615.1	chr3	65531580	65531780	+	1	NA	NA	NA	-2266	NR_027955	71004	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	0.005000	0.477612	
mm_144463.1	chr18	23497478	23497678	+	1	NA	NA	NA	96	NM_001285810	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.025000	0.477612	
mm_80400.1	chr9	77636375	77636575	+	1	NA	NA	NA	-257	NM_172925	244923	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0.020000	0.572139	
mm_56502.1	chr6	99338185	99338385	-	1	NA	NA	NA	-71770	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.010000	0.502488	-35(TGCTTTATAAGG,-,0.00)
mm_127087.1	chr15	97740921	97741121	+	1	NA	NA	NA	-9616	NM_001168693	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.025000	0.467662	-80(TCCCCTTTAAGG,-,0.00),-78(CCCTTTAAGGAA,+,0.00)
mm_157270.1	chrX	20146028	20146228	-	1	NA	NA	NA	86558	NM_021715	60322	Mm.44827	NM_021715	ENSMUSG00000037347	Chst7	2600013M07Rik|C6ST-2|GST5|Gn6st-4|glcNAc6ST-4	carbohydrate (N-acetylglucosamino) sulfotransferase 7	protein-coding	0.005000	0.532338	
mm_160341.1	chr8	18978049	18978249	-	1	NA	NA	NA	-33	NM_183039	360217	Mm.271560	NM_183039	ENSMUSG00000053678	Defb40	BD-40	defensin beta 40	protein-coding	0.010000	0.437811	
mm_7699.1	chr1	130422629	130422829	-	1	NA	NA	NA	314	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	0.025000	0.592040	
mm_148693.1	chr19	5741591	5741791	+	1	NA	NA	NA	787	NM_008520	16998	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0.075000	0.621891	
mm_133958.1	chr16	4077705	4077905	-	1	NA	NA	NA	5	NM_026508	68015	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0.095000	0.671642	
mm_130367.1	chr15	97803670	97803870	-	1	NA	NA	NA	11093	NM_001204281	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.005000	0.482587	
mm_41871.1	chr5	104508265	104508465	+	1	NA	NA	NA	13	NM_001166581	100042165	Mm.482189	NM_001166581	ENSMUSG00000079065	BC005561	-	cDNA sequence BC005561	protein-coding	0.145000	0.736318	
mm_125164.1	chr15	31268181	31268381	+	1	NA	NA	NA	43896	NM_146057	223453	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.010000	0.517413	
mm_4802.1	chr1	185247872	185248072	+	1	NA	NA	NA	4997	NR_035529	100316737		NR_035529	ENSMUSG00000105770	Mir664	mir-664|mmu-mir-664	microRNA 664	ncRNA	0.040000	0.552239	
mm_72317.1	chr8	78213232	78213432	+	1	NA	NA	NA	-10	NM_183096	73301	Mm.61243	NM_183096	ENSMUSG00000037101	Ttc29	1700031F13Rik	tetratricopeptide repeat domain 29	protein-coding	0.040000	0.587065	
mm_60613.1	chr7	44591099	44591299	+	1	NA	NA	NA	313	NM_001290682	16504	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.155000	0.731343	
mm_138830.1	chr17	39848070	39848270	+	1	NA	NA	NA	5173	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.080000	0.572139	
mm_99954.1	chr11	112825077	112825277	+	1	NA	NA	NA	-49	NR_130164	76393	Mm.86795	NR_130164		1700012H19Rik	-	RIKEN cDNA 1700012H19 gene	ncRNA	0.000000	0.462687	
mm_55265.1	chr6	53820418	53820618	-	1	NA	NA	NA	307	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.080000	0.601990	
mm_131502.1	chr16	17419185	17419385	+	1	NA	NA	NA	-12971	NM_001001983	224020	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase, catalytic, alpha polypeptide	protein-coding	0.010000	0.427861	
mm_88104.1	chr10	69096004	69096204	+	1	NA	NA	NA	-112448	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.015000	0.482587	
mm_54985.1	chr6	48745999	48746199	-	1	NA	NA	NA	-98	NM_175035	317757	Mm.455917	NM_175035	ENSMUSG00000043505	Gimap5	D630024P16|E230026N22Rik	GTPase, IMAP family member 5	protein-coding	0.015000	0.542289	35(CCTTTTCAAGAA,+,0.00)
mm_46206.1	chr5	98031340	98031540	-	1	NA	NA	NA	-478	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.050000	0.552239	
mm_145713.1	chr18	62951112	62951312	+	1	NA	NA	NA	-26704	NM_028017	108123	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0.000000	0.338308	
mm_17255.1	chr2	25822014	25822214	-	1	NA	NA	NA	-1039	NM_029959	77704	Mm.159974	NM_029959	ENSMUSG00000023210	Lcn9	9230102I19Rik	lipocalin 9	protein-coding	0.000000	0.427861	
mm_103506.1	chr11	76608445	76608645	-	1	NA	NA	NA	-30806	NM_198894	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.010000	0.417910	
mm_30453.1	chr3	153905759	153905959	-	1	NA	NA	NA	279	NM_031870	55993	Mm.272226	NM_031870	ENSMUSG00000005493	Msh4	4930485C04Rik|AV144863|mMsh4	mutS homolog 4	protein-coding	0.090000	0.661692	
mm_35285.1	chr4	21685694	21685894	-	1	NA	NA	NA	169	NM_001080771	230025	Mm.208541	NM_001080771	ENSMUSG00000040478	Prdm13	-	PR domain containing 13	protein-coding	0.100000	0.661692	
mm_54781.1	chr6	41543450	41543650	-	1	NA	NA	NA	21774	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.055000	0.621891	
mm_70070.1	chr7	142652959	142653159	-	1	NA	NA	NA	1937	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.000000	0.447761	18(TACCCTAAAAAG,-,0.00),20(CCCTAAAAAGCA,+,0.00)
mm_121299.1	chr14	105589473	105589673	+	1	NA	NA	NA	24	NR_102319	380930	Mm.427836	NR_102319		9330188P03Rik	Gm1589|mgt-6	RIKEN cDNA 9330188P03 gene	ncRNA	0.055000	0.487562	
mm_172158.1	chr6	43609113	43609313	+	1	NA	NA	NA	57065	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.020000	0.507463	
mm_98387.1	chr11	94210347	94210547	+	1	NA	NA	NA	-1007	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.065000	0.557214	
mm_70389.1	chr8	10899822	10900022	+	1	NA	NA	NA	0	NR_102285	71624	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0.035000	0.487562	
mm_95482.1	chr11	51263059	51263259	+	1	NA	NA	NA	45	NM_007714	12750	Mm.239354	NM_007714	ENSMUSG00000020385	Clk4	AI987988|C85119	CDC like kinase 4	protein-coding	0.120000	0.661692	
mm_102910.1	chr11	69560130	69560330	-	1	NA	NA	NA	7	NM_007911	13643	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	0.075000	0.686567	
mm_41014.1	chr5	81021661	81021861	+	1	NA	NA	NA	168	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.065000	0.611940	
mm_131557.1	chr16	18052812	18053012	+	1	NA	NA	NA	52	NM_010047	13353	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0.045000	0.626866	
mm_9554.1	chr1	173937748	173937948	-	1	NA	NA	NA	4644	NM_001302649	15950	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Mndal	interferon activated gene 203	protein-coding	0.005000	0.363184	51(GCACATAAAAGA,-,0.00)
mm_52125.1	chr6	97941875	97942075	+	1	NA	NA	NA	12158	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.020000	0.402985	
mm_115011.1	chr13	98354294	98354494	+	1	NA	NA	NA	149	NM_008242	15229	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	0.090000	0.706468	
mm_83467.1	chr9	45269046	45269246	-	1	NA	NA	NA	3	NM_008348	16154	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0.085000	0.651741	
mm_75993.1	chr8	72421361	72421561	-	1	NA	NA	NA	13	NM_001122832	13859	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	0.125000	0.711443	
mm_144027.1	chr17	90036681	90036881	-	1	NA	NA	NA	51587	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.030000	0.378109	
mm_68451.1	chr7	110061230	110061430	-	1	NA	NA	NA	-372	NM_009281	20841	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0.055000	0.592040	
mm_53120.1	chr6	125103334	125103534	+	1	NA	NA	NA	6410	NR_106012	102466272		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	0.010000	0.358209	-32(GCTTATAGATCC,+,0.00)
mm_106856.1	chr12	8009061	8009261	+	1	NA	NA	NA	31484	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.412935	65(GAGTATAAAAGT,-,0.00)
mm_37280.1	chr4	118954753	118954953	-	1	NA	NA	NA	66	NR_137285	100038571	Mm.426714	NR_137285	ENSMUSG00000073765	Gm12863	OTTMUSG00000008822	predicted gene 12863	ncRNA	0.015000	0.472637	
mm_93622.1	chr10	117277808	117278008	-	1	NA	NA	NA	4364	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.005000	0.487562	
mm_20440.1	chr2	129308996	129309196	-	1	NA	NA	NA	876	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.010000	0.437811	
mm_57742.1	chr6	129049114	129049314	-	1	NA	NA	NA	3313	NR_024263	232408	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.045000	0.606965	
mm_154900.1	chrX	20925620	20925820	+	1	NA	NA	NA	-4802	NM_013680	20964	Mm.439844	NM_013680	ENSMUSG00000037217	Syn1	Syn-1|Syn1-S	synapsin I	protein-coding	0.015000	0.517413	
mm_11220.1	chr2	29723928	29724128	+	1	NA	NA	NA	-37500	NM_001177392	433416	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	OTTMUSG00000012686	predicted gene 13547	protein-coding	0.015000	0.452736	
mm_101965.1	chr11	50307556	50307756	-	1	NA	NA	NA	-15320	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.010000	0.388060	
mm_108289.1	chr12	79141025	79141225	+	1	NA	NA	NA	10337	NM_009705	11847	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.000000	0.437811	-37(CCATTTAAATAC,+,0.00)
mm_155574.1	chrX	77511126	77511326	+	1	NA	NA	NA	-1	NM_020601	21372	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	0.135000	0.741294	
mm_83743.1	chr9	51102029	51102229	-	1	NA	NA	NA	-51	NM_177702	235345	Mm.72828	NM_177702	ENSMUSG00000032057	4833427G06Rik	-	RIKEN cDNA 4833427G06 gene	protein-coding	0.030000	0.532338	
mm_24153.1	chr3	88364477	88364677	+	1	NA	NA	NA	-12	NM_198410	68957	Mm.441486	NM_198410	ENSMUSG00000041423	Paqr6	1500001B10Rik	progestin and adipoQ receptor family member VI	protein-coding	0.075000	0.701493	
mm_30704.1	chr4	11810194	11810394	+	1	NA	NA	NA	52137	NM_019753	12557	Mm.33402	NM_019753	ENSMUSG00000028217	Cdh17	HPT-1|HPT-1/LI	cadherin 17	protein-coding	0.015000	0.497512	
mm_118507.1	chr14	13999895	14000095	+	1	NA	NA	NA	-12496	NM_139227	246103	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0.000000	0.338308	
mm_48370.1	chr5	139478463	139478663	-	1	NA	NA	NA	5928	NM_133349	100494	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.020000	0.537313	
mm_32615.1	chr4	114163343	114163543	+	1	NA	NA	NA	59	NM_001166027	230623	Mm.124482	NM_177669	ENSMUSG00000057977	Skint11	A630098G03Rik|Gm569	selection and upkeep of intraepithelial T cells 11	protein-coding	0.000000	0.412935	
mm_29594.1	chr3	119745710	119745910	-	1	NA	NA	NA	37578	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.005000	0.328358	-7(TTTTTTAAAGTC,+,0.00)
mm_69065.1	chr7	126922767	126922967	-	1	NA	NA	NA	-6012	NM_172747	233877	Mm.245897	NM_172747	ENSMUSG00000030685	Kctd13	1500003N18Rik|AV259508|PDIP1alpha|Pdip1|Poldip1	potassium channel tetramerisation domain containing 13	protein-coding	0.020000	0.547264	
mm_12242.1	chr2	68861470	68861670	+	1	NA	NA	NA	129	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.095000	0.686567	
mm_147114.1	chr18	35722256	35722456	-	1	NA	NA	NA	-865	NM_001033141	68545	Mm.329362	NM_001033141	ENSMUSG00000073599	Ecscr	1110006O17Rik|ARIA	endothelial cell surface expressed chemotaxis and apoptosis regulator	protein-coding	0.020000	0.572139	
mm_60600.1	chr7	44531456	44531656	+	1	NA	NA	NA	515	NM_019866	272382	Mm.8012	NM_019866	ENSMUSG00000008193	Spib	Spi-B	Spi-B transcription factor (Spi-1/PU.1 related)	protein-coding	0.005000	0.557214	
mm_22620.1	chr3	14641679	14641879	+	1	NA	NA	NA	52	NM_024495	71934	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	0.090000	0.731343	
mm_17929.1	chr2	35462620	35462820	-	1	NA	NA	NA	-1271	NM_001145821	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.020000	0.472637	
mm_146355.1	chr18	82575078	82575278	+	1	NA	NA	NA	20670	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.015000	0.497512	
mm_140152.1	chr17	80127563	80127763	+	1	NA	NA	NA	192	NM_176963	319625	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.025000	0.522388	
mm_80363.1	chr9	75306215	75306415	+	1	NA	NA	NA	27	NM_010313	14697	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0.020000	0.527363	
mm_106117.1	chr11	116359016	116359216	-	1	NA	NA	NA	-23762	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.030000	0.597015	
mm_60767.1	chr7	45554819	45555019	+	1	NA	NA	NA	-9	NM_025330	66065	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.010000	0.577114	
mm_40592.1	chr5	64230265	64230465	+	1	NA	NA	NA	8	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.150000	0.786070	
mm_83235.1	chr9	42399220	42399420	-	1	NA	NA	NA	609	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.020000	0.467662	
mm_8460.1	chr1	153186049	153186249	-	1	NA	NA	NA	298	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.070000	0.616915	
mm_160333.1	chr8	12573048	12573248	+	1	NA	NA	NA	99	NM_024279	78634	Mm.116871	NM_024279	ENSMUSG00000010435	Spaca7	1700094C09Rik	sperm acrosome associated 7	protein-coding	0.030000	0.567164	
mm_88562.1	chr10	79637215	79637415	+	1	NA	NA	NA	603	NM_001024539	216148	Mm.39424	NM_001024539	ENSMUSG00000020312	Shc2	6720466E06|SCK|ShcB|Sli	SHC (Src homology 2 domain containing) transforming protein 2	protein-coding	0.085000	0.691542	
mm_126156.1	chr15	78409896	78410096	+	1	NA	NA	NA	2892	NM_138670	246221	Mm.294215	NM_138670	ENSMUSG00000071711	Mpst	Mst	mercaptopyruvate sulfurtransferase	protein-coding	0.040000	0.572139	
mm_29141.1	chr3	105900736	105900936	-	1	NA	NA	NA	-3585	NM_009631	11542	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0.015000	0.507463	
mm_32707.1	chr4	116095508	116095708	+	1	NA	NA	NA	20339	NM_153521	230654	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	0.010000	0.398010	-43(GACTATATATAG,-,0.00),-41(CTATATATAGAG,+,0.00)
mm_24817.1	chr3	95625391	95625591	+	1	NA	NA	NA	511	NM_001026212	56205	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.025000	0.457711	
mm_24205.1	chr3	88621059	88621259	+	1	NA	NA	NA	53	NM_008487	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.100000	0.726368	
mm_10680.1	chr2	21650338	21650538	+	1	NA	NA	NA	282871	NM_001004761	241263	Mm.166647	NM_175706	ENSMUSG00000045967	Gpr158	5330427M13Rik|mKIAA1136	G protein-coupled receptor 158	protein-coding	0.000000	0.268657	
mm_17786.1	chr2	32982079	32982279	-	1	NA	NA	NA	-123	NM_019488	56017	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0.035000	0.582090	
mm_111831.1	chr12	107157064	107157264	-	1	NA	NA	NA	-440840	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.015000	0.532338	
mm_132941.1	chr16	49856508	49856708	+	1	NA	NA	NA	954	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.020000	0.393035	
mm_66998.1	chr7	64872873	64873073	-	1	NA	NA	NA	67	NM_023239	66647	Mm.19944	NM_023239	ENSMUSG00000070520	Ndnl2	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Nsmce3|mage-g1	necdin-like 2	protein-coding	0.165000	0.741294	
mm_63812.1	chr7	133747471	133747671	+	1	NA	NA	NA	12698	NM_001286030	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.025000	0.562189	
mm_56339.1	chr6	92816546	92816746	-	1	NA	NA	NA	84795	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	0.020000	0.552239	
mm_38810.1	chr4	148358767	148358967	-	1	NA	NA	NA	-70902	NM_001083342	242748	Mm.33873	NM_001083342	ENSMUSG00000041544	Ptchd2	Disp3|G630052C06Rik|RNDEu-2	patched domain containing 2	protein-coding	0.015000	0.547264	
mm_21917.1	chr2	166786673	166786873	-	1	NA	NA	NA	-6994	NM_023815	76367	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.090000	0.666667	
mm_60731.1	chr7	45420843	45421043	+	1	NA	NA	NA	-3	NM_008497	16866	Mm.57061	NM_008497	ENSMUSG00000100916	Lhb	Gm29035|LH|LH-B|LSH-B|LSH-beta	luteinizing hormone beta	protein-coding	0.005000	0.547264	
mm_103753.1	chr11	80779876	80780076	-	1	NA	NA	NA	49	NM_177390	338367	Mm.151948	NM_177390	ENSMUSG00000035441	Myo1d	9930104H07Rik|AW544947|D11Ertd9e|myosin-1d	myosin ID	protein-coding	0.140000	0.786070	
mm_169861.1	chr16	33517364	33517564	+	1	NA	NA	NA	-865	NM_134251	171286	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.075000	0.706468	
mm_75169.1	chr8	36730715	36730915	-	1	NA	NA	NA	2239	NM_001194941	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.005000	0.268657	
mm_86322.1	chr9	123021339	123021539	-	1	NA	NA	NA	113	NM_001164823	66079	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	0.145000	0.731343	
mm_61237.1	chr7	64754322	64754522	+	1	NA	NA	NA	118618	NM_023239	66647	Mm.19944	NM_023239	ENSMUSG00000070520	Ndnl2	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Nsmce3|mage-g1	necdin-like 2	protein-coding	0.020000	0.422886	
mm_18463.1	chr2	62343724	62343924	-	1	NA	NA	NA	68407	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.000000	0.368159	
mm_41228.1	chr5	88720767	88720967	+	1	NA	NA	NA	-4	NM_026735	68473	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	0.115000	0.711443	
mm_166555.1	chr6	42397266	42397466	+	1	NA	NA	NA	-2872	NM_001001452	387514	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0.005000	0.462687	
mm_153904.1	chr19	47090772	47090972	-	1	NA	NA	NA	106	NM_011053	18572	Mm.41166	NM_011053	ENSMUSG00000025047	Pdcd11	1110021I22Rik|ALG-4|Pdcd7|mKIAA0185	programmed cell death 11	protein-coding	0.095000	0.641791	
mm_142596.1	chr17	46763561	46763761	-	1	NA	NA	NA	51	NM_011195	19208	Mm.215173	NM_011195	ENSMUSG00000036858	Ptcra	gp33|pT-alpha|pT-alpha-TCR|pT[a]|pTa|pTalpha	pre T cell antigen receptor alpha	protein-coding	0.005000	0.626866	
mm_88698.1	chr10	80142316	80142516	+	1	NA	NA	NA	101	NM_025313	66043	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0.105000	0.656716	
mm_109974.1	chr12	12938646	12938846	-	1	NA	NA	NA	3090	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.015000	0.432836	
mm_25223.1	chr3	103857510	103857710	+	1	NA	NA	NA	-2185	NR_104070	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.025000	0.467662	
mm_110399.1	chr12	44210021	44210221	-	1	NA	NA	NA	-53	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.115000	0.656716	15(GGCTCTATAAGC,-,0.00)
mm_102145.1	chr11	53631775	53631975	-	1	NA	NA	NA	2827	NM_008355	16163	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	0.015000	0.641791	
mm_108888.1	chr12	99999058	99999258	+	1	NA	NA	NA	34659	NM_001164427	217826	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.005000	0.472637	-33(TCATATAAAGCG,+,0.00)
mm_57969.1	chr6	135346319	135346519	-	1	NA	NA	NA	-16512	NM_010128	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.005000	0.472637	
mm_103011.1	chr11	69734629	69734829	-	1	NA	NA	NA	23904	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.005000	0.512438	
mm_170028.1	chr17	21845636	21845836	-	1	NA	NA	NA	23	NM_029281	75424	Mm.271252	NM_029281	ENSMUSG00000069743	Zfp820	2610036F08Rik	zinc finger protein 820	protein-coding	0.070000	0.592040	
mm_96795.1	chr11	69980704	69980904	+	1	NA	NA	NA	-364	NM_026017	67181	Mm.41678	NM_026017	ENSMUSG00000018559	Ctdnep1	2610507E10Rik|Dullard	CTD nuclear envelope phosphatase 1	protein-coding	0.045000	0.582090	
mm_65110.1	chr7	19309913	19310113	-	1	NA	NA	NA	32	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.075000	0.517413	
mm_44997.1	chr5	38159472	38159672	-	1	NA	NA	NA	-105	NM_010942	18196	Mm.7414	NM_010942	ENSMUSG00000029126	Nsg1	Neep21|m234|p21	neuron specific gene family member 1	protein-coding	0.185000	0.791045	
mm_106069.1	chr11	116138768	116138968	-	1	NA	NA	NA	0	NM_024177	60441	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	0.105000	0.716418	
mm_67004.1	chr7	65213320	65213520	-	1	NA	NA	NA	-56892	NM_183087	70638	Mm.441986	NM_183087	ENSMUSG00000030518	Fam189a1	5730507A09Rik|AW047451	family with sequence similarity 189, member A1	protein-coding	0.030000	0.517413	
mm_108660.1	chr12	86421581	86421781	+	1	NA	NA	NA	37	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.100000	0.656716	
mm_12795.1	chr2	79635525	79635725	+	1	NA	NA	NA	200	NM_080558	70599	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0.105000	0.691542	
mm_162114.1	chrX	53670281	53670481	-	1	NA	NA	NA	27	NM_001018063	553127	Mm.328602	NM_001018063	ENSMUSG00000067924	Cxx1b	Mart8c	CAAX box 1B	protein-coding	0.050000	0.587065	
mm_149953.1	chr19	28011645	28011845	+	1	NA	NA	NA	-579	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.080000	0.601990	
mm_114533.1	chr13	73626812	73627012	+	1	NA	NA	NA	-89	NM_009354	21752	Mm.10109	NM_009354	ENSMUSG00000021611	Tert	EST2|TCS1|TP2|TR|TRT	telomerase reverse transcriptase	protein-coding	0.060000	0.582090	
mm_6610.1	chr1	75479054	75479254	-	1	NA	NA	NA	317	NM_001001565	74241	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0.135000	0.796020	
mm_77233.1	chr8	115704316	115704516	-	1	NA	NA	NA	2478	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.015000	0.388060	
mm_34096.1	chr4	138879222	138879422	+	1	NA	NA	NA	1380	NM_012044	26970	Mm.296007	NM_012044	ENSMUSG00000028751	Pla2g2e	-	phospholipase A2, group IIE	protein-coding	0.020000	0.567164	
mm_63306.1	chr7	126861100	126861300	+	1	NA	NA	NA	263	NM_153580	233875	Mm.486253	NM_153580	ENSMUSG00000030689	Ino80e	AI225782|AI854876|Ccdc85|Ccdc95	INO80 complex subunit E	protein-coding	0.020000	0.497512	
mm_33163.1	chr4	126018126	126018326	+	1	NA	NA	NA	-6433	NR_045561	12986	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.015000	0.452736	
mm_46704.1	chr5	110269755	110269955	-	1	NA	NA	NA	44	NM_028273	72542	Mm.61682	NM_028273	ENSMUSG00000029500	Pgam5	2610528A17Rik	phosphoglycerate mutase family member 5	protein-coding	0.125000	0.711443	
mm_97823.1	chr11	82964470	82964670	+	1	NA	NA	NA	-3889	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.010000	0.402985	
mm_140387.1	chr17	87282532	87282732	+	1	NA	NA	NA	182	NR_015506	74597	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	0.095000	0.711443	
mm_2352.1	chr1	92910922	92911122	+	1	NA	NA	NA	197	NM_181405	108657	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	0.145000	0.781095	
mm_40433.1	chr5	53590245	53590445	+	1	NA	NA	NA	-1	NM_009035	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.090000	0.676617	
mm_96169.1	chr11	61488303	61488503	+	1	NA	NA	NA	2959	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.010000	0.537313	
mm_45717.1	chr5	84417279	84417479	-	1	NA	NA	NA	3	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.155000	0.766169	
mm_86084.1	chr9	114818982	114819182	-	1	NA	NA	NA	25070	NM_027294	70031	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	0.015000	0.517413	
mm_43444.1	chr5	136103269	136103469	+	1	NA	NA	NA	-2153	NR_106002	102465626		NR_106002	ENSMUSG00000099003	Mir7035	Gm27661|mmu-mir-7035	microRNA 7035	ncRNA	0.040000	0.537313	
mm_53405.1	chr6	131837078	131837278	+	1	NA	NA	NA	-147115	NM_207019	387346	Mm.377908	NM_207019	ENSMUSG00000063478	Tas2r114	T2R14|Tas2r14|mGR14|mt2r46	taste receptor, type 2, member 114	protein-coding	0.005000	0.537313	
mm_117674.1	chr13	93637656	93637856	-	1	NA	NA	NA	2	NM_016668	12116	Mm.329582	NM_016668	ENSMUSG00000074768	Bhmt	-	betaine-homocysteine methyltransferase	protein-coding	0.025000	0.527363	
mm_146623.1	chr18	10151042	10151242	-	1	NA	NA	NA	30650	NM_009071	19877	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.020000	0.432836	
mm_36016.1	chr4	56916071	56916271	-	1	NA	NA	NA	-20873	NR_029789	723837		NR_029789	ENSMUSG00000065544	Mir32	Mirn32|mir-32|mmu-mir-32	microRNA 32	ncRNA	0.040000	0.542289	73(GTTTTAAAACGC,+,0.00)
mm_97857.1	chr11	83078262	83078462	+	1	NA	NA	NA	13250	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.005000	0.517413	
mm_155044.1	chrX	42150639	42150839	+	1	NA	NA	NA	38	NM_021465	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.050000	0.646766	
mm_47107.1	chr5	118477664	118477864	-	1	NA	NA	NA	-82955	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.025000	0.532338	
mm_25771.1	chr3	126520403	126520603	+	1	NA	NA	NA	-76448	NM_001293663	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.005000	0.378109	
mm_10067.1	chr1	193510073	193510273	-	1	NA	NA	NA	-2643	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.010000	0.502488	-68(GCATAAATAGAG,+,0.00)
mm_160456.1	chr8	107483298	107483498	+	1	NA	NA	NA	47000	NM_025830	66894	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.015000	0.522388	
mm_143197.1	chr17	62733618	62733818	-	1	NA	NA	NA	147599	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.020000	0.373134	-7(TTTTTTAAAGAC,+,0.00)
mm_6147.1	chr1	64928014	64928214	-	1	NA	NA	NA	28710	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.025000	0.527363	
mm_9333.1	chr1	172003997	172004197	-	1	NA	NA	NA	23198	NM_033509	93840	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	vang-like 2 (van gogh, Drosophila)	protein-coding	0.020000	0.532338	
mm_73311.1	chr8	105174159	105174359	+	1	NA	NA	NA	3585	NM_001161458	12400	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0.000000	0.477612	
mm_121757.1	chr14	19642807	19643007	-	1	NA	NA	NA	-40320	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.000000	0.482587	
mm_169567.1	chr15	17790754	17790954	+	1	NA	NA	NA	578773	NR_045711	70886	Mm.399021	NR_045711		4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0.020000	0.482587	-33(GTGTATATAAGC,-,0.00)
mm_38446.1	chr4	139967525	139967725	-	1	NA	NA	NA	-5	NR_035519	100316727		NR_035519	ENSMUSG00000089294	Mir2139	mmu-mir-2139	microRNA 2139	ncRNA	0.020000	0.587065	
mm_108008.1	chr12	73584699	73584899	+	1	NA	NA	NA	3	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.095000	0.716418	
mm_136776.1	chr17	10318229	10318429	+	1	NA	NA	NA	1032	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.055000	0.477612	
mm_132934.1	chr16	49855255	49855455	+	1	NA	NA	NA	-299	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.080000	0.666667	
mm_95806.1	chr11	55109994	55110194	+	1	NA	NA	NA	12109	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.010000	0.512438	
mm_172053.1	chr6	128798979	128799179	+	1	NA	NA	NA	-10438	NM_001159904	17059	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0.075000	0.517413	
mm_70952.1	chr8	26977050	26977250	+	1	NA	NA	NA	-186	NM_001101502	353310	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.150000	0.726368	
mm_68464.1	chr7	110372618	110372818	-	1	NA	NA	NA	151015	NM_009302	20947	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.005000	0.417910	
mm_66755.1	chr7	46714203	46714403	-	1	NA	NA	NA	1373	NM_011315	20210	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	0.010000	0.452736	
mm_109015.1	chr12	103393784	103393984	+	1	NA	NA	NA	5202	NM_001177841	68149	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	0.030000	0.487562	
mm_14796.1	chr2	145872389	145872589	+	1	NA	NA	NA	-30752	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.000000	0.283582	
mm_11534.1	chr2	32629429	32629629	+	1	NA	NA	NA	29	NM_021515	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.010000	0.577114	
mm_21010.1	chr2	152395974	152396174	-	1	NA	NA	NA	1972	NM_011438	20667	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.025000	0.507463	
mm_59772.1	chr7	28834036	28834236	+	1	NA	NA	NA	-34	NM_010707	16857	Mm.210336	NM_010707		Lgals6	galectin-6	lectin, galactose binding, soluble 6	protein-coding	0.010000	0.582090	
mm_80789.1	chr9	95955532	95955732	+	1	NA	NA	NA	872	NM_001311130	24127	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	0.015000	0.313433	-96(GTGCTTAAAGGC,-,0.00)
mm_92586.1	chr10	80039599	80039799	-	1	NA	NA	NA	-40	NM_025554	66420	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0.110000	0.686567	
mm_143311.1	chr17	66076957	66077157	-	1	NA	NA	NA	-11	NM_001025572	106585	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	0.125000	0.701493	
mm_51289.1	chr6	72304978	72305178	+	1	NA	NA	NA	468	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.015000	0.601990	
mm_148428.1	chr19	3941772	3941972	+	1	NA	NA	NA	6686	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.015000	0.547264	
mm_127077.1	chr15	97385352	97385552	+	1	NA	NA	NA	-138165	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.015000	0.462687	
mm_127913.1	chr15	9529775	9529975	-	1	NA	NA	NA	1	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.010000	0.472637	
mm_88265.1	chr10	74089665	74089865	+	1	NA	NA	NA	267898	NM_001142735	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0.000000	0.368159	
mm_61853.1	chr7	88302092	88302292	+	1	NA	NA	NA	24107	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.020000	0.402985	
mm_853.1	chr1	52119476	52119676	+	1	NA	NA	NA	-46	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.080000	0.651741	
mm_156146.1	chrX	129840509	129840709	+	1	NA	NA	NA	90867	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.000000	0.278607	
mm_28670.1	chr3	95283315	95283515	-	1	NA	NA	NA	480	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.090000	0.671642	
mm_29348.1	chr3	108382421	108382621	-	1	NA	NA	NA	1220	NR_040560	100038453	Mm.214328	NR_040560	ENSMUSG00000074281	Gm12522	OTTMUSG00000007300	predicted gene 12522	ncRNA	0.010000	0.497512	
mm_15412.1	chr2	156780428	156780628	+	1	NA	NA	NA	5064	NM_172118	98932	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0.035000	0.567164	
mm_117880.1	chr13	98984503	98984703	-	1	NA	NA	NA	-38	NM_027064	69382	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0.010000	0.482587	
mm_20344.1	chr2	127705574	127705774	-	1	NA	NA	NA	24223	NM_145532	228576	Mm.133036	NM_145532	ENSMUSG00000027377	Mall	BC012256|BENE	mal, T cell differentiation protein-like	protein-coding	0.015000	0.522388	
mm_47249.1	chr5	121575922	121576122	-	1	NA	NA	NA	17802	NM_009656	11669	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.040000	0.597015	
mm_160388.1	chr8	47219843	47220043	-	1	NA	NA	NA	69459	NM_001286376	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.000000	0.412935	
mm_11512.1	chr2	32576301	32576501	+	1	NA	NA	NA	683	NM_198191	227733	Mm.78923	NM_198191	ENSMUSG00000046854	Pip5kl1	BC028795	phosphatidylinositol-4-phosphate 5-kinase-like 1	protein-coding	0.005000	0.497512	
mm_75374.1	chr8	45333050	45333250	-	1	NA	NA	NA	46	NM_133969	102294	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0.045000	0.601990	
mm_113502.1	chr13	37542990	37543190	+	1	NA	NA	NA	197745	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.040000	0.587065	
mm_72587.1	chr8	84338524	84338724	+	1	NA	NA	NA	-68222	NM_026350	67736	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	0.040000	0.542289	
mm_122797.1	chr14	54463976	54464176	-	1	NA	NA	NA	-71	NM_022993	65107	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	0.095000	0.636816	
mm_158689.1	chrX	160806630	160806830	-	1	NA	NA	NA	38717	NM_011302	20147	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	0.005000	0.353234	
mm_60475.1	chr7	44478125	44478325	+	1	NA	NA	NA	-6292	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.452736	
mm_152070.1	chr19	6542970	6543170	-	1	NA	NA	NA	0	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.010000	0.462687	
mm_87961.1	chr10	63280870	63281070	+	1	NA	NA	NA	37173	NM_026101	67345	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0.005000	0.437811	
mm_101674.1	chr11	39218178	39218378	-	1	NA	NA	NA	171947	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA	0.005000	0.273632	
mm_51477.1	chr6	83014595	83014795	+	1	NA	NA	NA	18776	NM_010070	13448	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.025000	0.557214	42(CACCCTAAAAGG,-,0.00),44(CCCTAAAAGGTC,+,0.00)
mm_26262.1	chr3	142500582	142500782	+	1	NA	NA	NA	3748	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.010000	0.532338	
mm_1709.1	chr1	75236410	75236610	+	1	NA	NA	NA	87	NM_001159883	56812	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.100000	0.721393	
mm_67840.1	chr7	98492792	98492992	-	1	NA	NA	NA	-1330	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.010000	0.462687	
mm_39646.1	chr5	24645383	24645583	+	1	NA	NA	NA	30	NR_003953	72252	Mm.87446	NR_003953	ENSMUSG00000038165	1700022A21Rik	-	glycerol-3-phosphate dehydrogenase 1-like pseudogene	pseudo	0.005000	0.492537	-13(GACTTTAAAGGG,-,0.00)
mm_152756.1	chr19	20372816	20373016	-	1	NA	NA	NA	17755	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.010000	0.338308	-63(GTGCTTTTAAGG,-,0.00),-62(TGCTTTTAAGGC,-,0.00),-61(GCTTTTAAGGCT,+,0.00)
mm_148111.1	chr18	74215843	74216043	-	1	NA	NA	NA	-269	NM_028868	74322	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.040000	0.482587	
mm_133347.1	chr16	81285248	81285448	+	1	NA	NA	NA	84651	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.010000	0.348259	-83(TGCCATAAAAAG,-,0.00)
mm_70166.1	chr7	143608118	143608318	-	1	NA	NA	NA	-8128	NM_013742	27267	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	0.000000	0.412935	
mm_60.1	chr1	6575967	6576167	+	1	NA	NA	NA	88836	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.447761	
mm_82164.1	chr9	123805440	123805640	+	1	NA	NA	NA	-937	NM_030712	80901	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.005000	0.432836	-35(TTCTTTTAAAAG,-,0.00),-34(TCTTTTAAAAGG,+,0.00),-34(TCTTTTAAAAGG,-,0.00),-33(CTTTTAAAAGGA,+,0.00)
mm_172708.1	chr8	6940589	6940789	-	1	NA	NA	NA	1720084	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.015000	0.477612	
mm_69357.1	chr7	130480340	130480540	-	1	NA	NA	NA	39140	NM_001136054	11907	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0.010000	0.467662	
mm_52047.1	chr6	97210383	97210583	+	1	NA	NA	NA	-309	NM_022992	65106	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	0.010000	0.363184	32(GTGTTTAAAAAG,-,0.00),34(GTTTAAAAAGAG,+,0.00)
mm_27131.1	chr3	32365325	32365525	-	1	NA	NA	NA	-64	NR_027966	67576	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	0.155000	0.736318	
mm_100965.1	chr11	6638694	6638894	-	1	NA	NA	NA	-145	NM_011709	22373	Mm.268094	NM_011709	ENSMUSG00000000381	Wap	-	whey acidic protein	protein-coding	0.005000	0.492537	
mm_22700.1	chr3	18054163	18054363	+	1	NA	NA	NA	-62	NM_021560	59058	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0.045000	0.462687	-56(CCTTTTATAAAG,+,0.00)
mm_81009.1	chr9	104002651	104002851	+	1	NA	NA	NA	207	NM_028721	74025	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding	0.090000	0.706468	
mm_103332.1	chr11	74572643	74572843	-	1	NA	NA	NA	17415	NM_001015046	380711	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.005000	0.587065	
mm_95498.1	chr11	51875998	51876198	+	1	NA	NA	NA	-18617	NM_199299	76901	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.015000	0.552239	
mm_9291.1	chr1	171634890	171635090	-	1	NA	NA	NA	6910	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.015000	0.482587	
mm_76382.1	chr8	84842359	84842559	-	1	NA	NA	NA	-1794	NM_009010	19358	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.000000	0.427861	
mm_146461.1	chr18	86710788	86710988	+	1	NA	NA	NA	-222	NM_001302356	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.060000	0.532338	-68(GTCTTTAGAGCC,+,0.00)
mm_86714.1	chr10	18943760	18943960	+	1	NA	NA	NA	68103	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.000000	0.447761	
mm_47960.1	chr5	135623520	135623720	-	1	NA	NA	NA	-9034	NM_146002	215160	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0.025000	0.487562	
mm_135000.1	chr16	32176838	32177038	-	1	NA	NA	NA	-2862	NM_001033539	328660	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.030000	0.517413	54(AGCTCTAAAAGC,-,0.00),55(GCTCTAAAAGCC,+,0.00)
mm_66651.1	chr7	45711366	45711566	-	1	NA	NA	NA	3741	NM_020011	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.035000	0.661692	
mm_73958.1	chr8	120464388	120464588	+	1	NA	NA	NA	-24378	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.025000	0.482587	
mm_33141.1	chr4	125109516	125109716	+	1	NA	NA	NA	18265	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.020000	0.537313	
mm_122226.1	chr14	32707669	32707869	-	1	NA	NA	NA	-22497	NM_001195097	100504518	Mm.318319	NM_001195097	ENSMUSG00000071540	3425401B19Rik	-	RIKEN cDNA 3425401B19 gene	protein-coding	0.020000	0.582090	
mm_71084.1	chr8	34804963	34805163	+	1	NA	NA	NA	-2547	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.065000	0.616915	
mm_16611.1	chr2	5297234	5297434	-	1	NA	NA	NA	-82056	NR_030601	100124465		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.010000	0.512438	
mm_153603.1	chr19	43890481	43890681	-	1	NA	NA	NA	-10813	NM_001306088	71972	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.015000	0.537313	
mm_47657.1	chr5	125392958	125393158	-	1	NA	NA	NA	-3041	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.030000	0.542289	
mm_60846.1	chr7	45787308	45787508	+	1	NA	NA	NA	2028	NM_001290990	381983	Mm.44928	NM_001005511	ENSMUSG00000062044	Lmtk3	BC059845|aatyk3	lemur tyrosine kinase 3	protein-coding	0.015000	0.636816	
mm_156574.1	chrX	151928173	151928373	+	1	NA	NA	NA	15059	NR_029753	723947		NR_029753	ENSMUSG00000065536	Mir98	Mirn98|mir-98|mmu-mir-98	microRNA 98	ncRNA	0.025000	0.597015	
mm_17118.1	chr2	24475473	24475673	-	1	NA	NA	NA	26	NM_011040	18510	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0.035000	0.646766	
mm_141922.1	chr17	35000753	35000953	-	1	NA	NA	NA	-54	NM_011690	22321	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.120000	0.706468	
mm_75427.1	chr8	47254667	47254867	-	1	NA	NA	NA	34635	NM_001286376	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.020000	0.407960	-51(CCGTATTAAAGG,-,0.00)
mm_35894.1	chr4	49549149	49549349	-	1	NA	NA	NA	297	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.005000	0.442786	
mm_10743.1	chr2	23069348	23069548	+	1	NA	NA	NA	376	NM_001102438	74159	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.045000	0.597015	
mm_109729.1	chr12	116405332	116405532	+	1	NA	NA	NA	30	NM_133762	76044	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	0.140000	0.701493	
mm_126724.1	chr15	85462048	85462248	+	1	NA	NA	NA	41079	NM_001256072	328577	Mm.212960	NM_001256072	ENSMUSG00000096607	7530416G11Rik	-	RIKEN cDNA 7530416G11 gene	protein-coding	0.010000	0.482587	-29(CTTTTTAAATGG,+,0.00)
mm_1447.1	chr1	67230365	67230565	+	1	NA	NA	NA	107438	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.010000	0.417910	
mm_79532.1	chr9	57765073	57765273	+	1	NA	NA	NA	687	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.115000	0.761194	
mm_43383.1	chr5	135725661	135725861	+	1	NA	NA	NA	10128	NR_106001	102466791		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.020000	0.606965	
mm_24901.1	chr3	96181106	96181306	+	1	NA	NA	NA	-21	NM_022030	64051	Mm.491135	NM_022030	ENSMUSG00000038486	Sv2a	AI746429|mKIAA0736	synaptic vesicle glycoprotein 2 a	protein-coding	0.080000	0.741294	
mm_18420.1	chr2	60722571	60722771	-	1	NA	NA	NA	-68	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.050000	0.507463	
mm_17787.1	chr2	33086110	33086310	-	1	NA	NA	NA	994	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.020000	0.467662	
mm_117006.1	chr13	57908216	57908416	-	1	NA	NA	NA	16	NM_009262	20745	Mm.379020	NM_009262	ENSMUSG00000056222	Spock1	Spock|Ticn1|testican	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	protein-coding	0.135000	0.741294	
mm_134310.1	chr16	15863216	15863416	-	1	NA	NA	NA	6	NM_029354	72083	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	0.060000	0.522388	52(CCGTTTAAAAGC,-,0.00)
mm_32785.1	chr4	116709137	116709337	+	1	NA	NA	NA	307	NM_026714	68394	Mm.425201	NM_026714	ENSMUSG00000028689	Ccdc163	0610037D15Rik|4933430J04Rik	coiled-coil domain containing 163	protein-coding	0.005000	0.417910	
mm_168499.1	chr1	152717970	152718170	+	1	NA	NA	NA	-32481	NM_001081197	71281	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0.000000	0.427861	
mm_99103.1	chr11	100118979	100119179	+	1	NA	NA	NA	1498	NM_001313949	16663	Mm.4646	NM_010662	ENSMUSG00000044041	Krt13	CK13|K13|Krt-1.13|Krt1-13	keratin 13	protein-coding	0.010000	0.547264	87(CACTCTAAAAGT,-,0.00)
mm_169386.1	chr14	41939416	41939616	+	1	NA	NA	NA	155761	NR_073362	73553	Mm.243777	NM_028570	ENSMUSG00000090462	1700091H14Rik	100041930|Gm3578	RIKEN cDNA 1700091H14 gene	ncRNA	0.010000	0.467662	
mm_110990.1	chr12	77177308	77177508	-	1	NA	NA	NA	-60696	NM_001252614	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.005000	0.422886	
mm_12464.1	chr2	71387957	71388157	+	1	NA	NA	NA	-1203	NM_026115	107435	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0.020000	0.557214	
mm_142200.1	chr17	36958369	36958569	-	1	NA	NA	NA	-41	NM_023162	66136	Mm.486229	NM_023162	ENSMUSG00000036315	Znrd1	1110014N07Rik|Rpa12	zinc ribbon domain containing, 1	protein-coding	0.070000	0.597015	
mm_144850.1	chr18	36638096	36638296	+	1	NA	NA	NA	-25864	NM_201256	108112	Mm.24790	NM_201256	ENSMUSG00000090264	Eif4ebp3	4e-bp3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding	0.000000	0.313433	
mm_84889.1	chr9	79759774	79759974	-	1	NA	NA	NA	-21	NM_009945	12866	Mm.152627	NM_009945	ENSMUSG00000032330	Cox7a2	COX7AL|Cox7a3|CoxVIIa-L	cytochrome c oxidase subunit VIIa 2	protein-coding	0.100000	0.646766	
mm_62661.1	chr7	108804387	108804587	+	1	NA	NA	NA	21510	NM_146726	258721	Mm.377655	NM_146726	ENSMUSG00000066241	Olfr514	MOR268-1	olfactory receptor 514	protein-coding	0.015000	0.507463	-82(GCCTTTAAATAC,-,0.00)
mm_572.1	chr1	38907828	38908028	+	1	NA	NA	NA	-9768	NM_145142	98388	Mm.260054	NM_145142	ENSMUSG00000026080	Chst10	AI507003|AU041319|Hnk-1st|ST	carbohydrate sulfotransferase 10	protein-coding	0.010000	0.432836	
mm_95702.1	chr11	54438073	54438273	+	1	NA	NA	NA	-6	NM_173753	216742	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.120000	0.696517	
mm_29413.1	chr3	108972236	108972436	-	1	NA	NA	NA	31779	NM_001078646	66715	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0.005000	0.323383	
mm_70927.1	chr8	25812957	25813157	+	1	NA	NA	NA	4583	NM_011485	20845	Mm.293314	NM_011485	ENSMUSG00000031574	Star	AV363654|D8Ertd419e|stARD1	steroidogenic acute regulatory protein	protein-coding	0.005000	0.442786	
mm_150312.1	chr19	34573195	34573395	+	1	NA	NA	NA	-10234	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.000000	0.482587	
mm_69440.1	chr7	132910905	132911105	-	1	NA	NA	NA	-38617	NM_207302	360216	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0.010000	0.417910	
mm_98279.1	chr11	89024418	89024618	+	1	NA	NA	NA	25115	NM_009546	217069	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.025000	0.502488	
mm_2876.1	chr1	131827911	131828111	+	1	NA	NA	NA	-1	NM_173865	98396	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	0.055000	0.621891	
mm_119051.1	chr14	30635424	30635624	+	1	NA	NA	NA	-9316	NM_011103	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.020000	0.572139	
mm_110260.1	chr12	31713743	31713943	-	1	NA	NA	NA	83	NM_175191	73010	Mm.441517	NM_175191	ENSMUSG00000044067	Gpr22	2900068K05Rik|AW061316	G protein-coupled receptor 22	protein-coding	0.020000	0.477612	
mm_92719.1	chr10	80798426	80798626	-	1	NA	NA	NA	100	NM_023900	78670	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.110000	0.631841	
mm_27099.1	chr3	30386302	30386502	-	1	NA	NA	NA	123085	NM_021442	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.005000	0.412935	
mm_5614.1	chr1	39651202	39651402	-	1	NA	NA	NA	-120	NM_170597	263764	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0.035000	0.552239	
mm_6143.1	chr1	64924847	64925047	-	1	NA	NA	NA	31877	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.010000	0.507463	
mm_41051.1	chr5	86496033	86496233	+	1	NA	NA	NA	22467	NM_177162	320454	Mm.184522	NM_177162	ENSMUSG00000079451	Tmprss11g	9930032O22Rik|Desc4	transmembrane protease, serine 11g	protein-coding	0.020000	0.452736	
mm_10180.1	chr2	4717759	4717959	+	1	NA	NA	NA	28	NM_178663	209645	Mm.149539	NM_178663	ENSMUSG00000048186	Bend7	1110017O21Rik|E130319B15Rik	BEN domain containing 7	protein-coding	0.175000	0.835821	
mm_112258.1	chr12	113879456	113879656	-	1	NA	NA	NA	335648	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.000000	0.497512	
mm_113612.1	chr13	41469714	41469914	+	1	NA	NA	NA	17546	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.000000	0.412935	
mm_74309.1	chr8	126592345	126592545	+	1	NA	NA	NA	991	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.070000	0.651741	
mm_109437.1	chr12	110695834	110696034	+	1	NA	NA	NA	461	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.155000	0.721393	
mm_30842.1	chr4	24496367	24496567	+	1	NA	NA	NA	5	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.170000	0.736318	
mm_82429.1	chr9	15007754	15007954	-	1	NA	NA	NA	37624	NM_019482	55991	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.040000	0.467662	
mm_147950.1	chr18	66674406	66674606	-	1	NA	NA	NA	170328	NR_040528	100503565	Mm.98256	NR_040528		Gm9926	ENSMUSG00000053891	predicted gene 9926	ncRNA	0.040000	0.502488	
mm_132474.1	chr16	36708572	36708772	+	1	NA	NA	NA	14694	NM_001285791	106347	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.010000	0.502488	
mm_119714.1	chr14	53875899	53876099	+	1	NA	NA	NA	377930	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.502488	
mm_70827.1	chr8	23140060	23140260	+	1	NA	NA	NA	1130	NM_001310437	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.010000	0.497512	
mm_66675.1	chr7	45742362	45742562	-	1	NA	NA	NA	-16646	NM_027055	69363	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	0.040000	0.552239	
mm_45714.1	chr5	84417047	84417247	-	1	NA	NA	NA	235	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.085000	0.646766	
mm_34284.1	chr4	141426315	141426515	+	1	NA	NA	NA	5636	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.015000	0.502488	
mm_64474.1	chr7	143052658	143052858	+	1	NA	NA	NA	8	NM_133655	12520	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0.105000	0.701493	-5(GTCTATAAAGAG,-,0.00)
mm_55761.1	chr6	78466258	78466458	-	1	NA	NA	NA	2516	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.005000	0.402985	
mm_125020.1	chr15	25655168	25655368	+	1	NA	NA	NA	32718	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.020000	0.502488	
mm_47069.1	chr5	116441191	116441391	-	1	NA	NA	NA	2569	NR_015595	76798	Mm.444322	NR_015595	ENSMUSG00000086219	Srrm4os	2410137F16Rik	serine/arginine repetitive matrix 4, opposite strand	ncRNA	0.000000	0.502488	
mm_153594.1	chr19	43735843	43736043	-	1	NA	NA	NA	17057	NM_144874	226139	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	0.010000	0.353234	
mm_68579.1	chr7	115859733	115859933	-	1	NA	NA	NA	-13693	NM_001277326	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.010000	0.368159	64(GCTTTTATATTC,+,0.00)
mm_48133.1	chr5	137150028	137150228	-	1	NA	NA	NA	-33921	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.512438	
mm_124831.1	chr15	9186148	9186348	+	1	NA	NA	NA	-30823	NM_001285980	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.000000	0.328358	
mm_5748.1	chr1	46075937	46076137	-	1	NA	NA	NA	9299	NM_001160386	227058	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	0.040000	0.497512	
mm_14469.1	chr2	131352909	131353109	+	1	NA	NA	NA	-117	NM_178607	51902	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	0.090000	0.621891	
mm_6584.1	chr1	75236237	75236437	-	1	NA	NA	NA	-86	NM_020266	56812	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.075000	0.641791	
mm_24382.1	chr3	90248809	90249009	+	1	NA	NA	NA	717	NM_013901	30791	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0.015000	0.572139	
mm_124984.1	chr15	21097595	21097795	+	1	NA	NA	NA	-13757	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.005000	0.402985	
mm_26361.1	chr3	142549457	142549657	+	1	NA	NA	NA	-10495	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.000000	0.263682	
mm_154183.1	chr19	58793188	58793388	-	1	NA	NA	NA	1126	NM_026208	67507	Mm.27027	NM_026208	ENSMUSG00000026931	1700019N19Rik	-	RIKEN cDNA 1700019N19 gene	protein-coding	0.015000	0.467662	
mm_39336.1	chr5	8798581	8798781	+	1	NA	NA	NA	534	NM_011075	18669	Mm.146649	NM_011075	ENSMUSG00000028970	Abcb1b	Abcb1|Mdr1|Mdr1b|Pgy-1|Pgy1|mdr	ATP-binding cassette, sub-family B (MDR/TAP), member 1B	protein-coding	0.040000	0.616915	
mm_67425.1	chr7	80349456	80349656	-	1	NA	NA	NA	6419	NM_026812	68695	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	0.005000	0.388060	-38(CCTTTTCTAGAC,+,0.00)
mm_54342.1	chr6	30669360	30669560	-	1	NA	NA	NA	24289	NM_031998	83922	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	0.020000	0.522388	
mm_2411.1	chr1	93825522	93825722	+	1	NA	NA	NA	382	NM_001310767	98314	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	0.050000	0.512438	57(TCTTTTAAGCCA,+,0.00)
mm_9692.1	chr1	178337147	178337347	-	1	NA	NA	NA	537	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.145000	0.721393	
mm_68960.1	chr7	126579130	126579330	-	1	NA	NA	NA	302	NR_106026	102465641		NR_106026	ENSMUSG00000098540	Mir7059	Gm27534|mmu-mir-7059	microRNA 7059	ncRNA	0.020000	0.562189	
mm_124740.1	chr15	6592784	6592984	+	1	NA	NA	NA	13037	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.010000	0.358209	
mm_69881.1	chr7	141636773	141636973	-	1	NA	NA	NA	16172	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.005000	0.487562	
mm_123604.1	chr14	67933649	67933849	-	1	NA	NA	NA	-177	NM_177780	68813	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0.120000	0.701493	
mm_75389.1	chr8	45555641	45555841	-	1	NA	NA	NA	47953	NM_001205219	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.015000	0.517413	-94(GCCTTAATGGAG,+,0.00)
mm_152897.1	chr19	24900929	24901129	-	1	NA	NA	NA	280	NM_008022	14237	Mm.377080	NM_008022	ENSMUSG00000051490	Foxd4	FREAC5|Fkh2	forkhead box D4	protein-coding	0.035000	0.507463	
mm_6768.1	chr1	84128313	84128513	-	1	NA	NA	NA	90548	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.407960	
mm_123765.1	chr14	70207558	70207758	-	1	NA	NA	NA	13	NM_011366	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.015000	0.477612	
mm_25260.1	chr3	104782245	104782445	+	1	NA	NA	NA	1289	NM_027982	71887	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	0.020000	0.552239	
mm_47872.1	chr5	134670281	134670481	-	1	NA	NA	NA	7867	NM_001305875	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.045000	0.626866	
mm_131720.1	chr16	21558499	21558699	+	1	NA	NA	NA	135481	NM_001285894	209018	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.005000	0.487562	
mm_25211.1	chr3	103832772	103832972	+	1	NA	NA	NA	176	NM_001142960	229672	Mm.297245	NM_001142959	ENSMUSG00000044165	Bcl2l15	Bfk|Gm566	BCLl2-like 15	protein-coding	0.025000	0.477612	
mm_168012.1	chrY	37763200	37763400	-	1	NA	NA	NA	-194511	NM_001160143	100040031	Mm.463839	NM_001160143	ENSMUSG00000093950	Gm20823	-	predicted gene, 20823	protein-coding	0.015000	0.467662	-32(TACTATATAAGC,-,0.00)
mm_24075.1	chr3	87930119	87930319	+	1	NA	NA	NA	-24	NM_153562	229503	Mm.296008	NM_153562	ENSMUSG00000004896	Rrnad1	-	ribosomal RNA adenine dimethylase domain containing 1	protein-coding	0.085000	0.636816	
mm_69676.1	chr7	139985288	139985488	-	1	NA	NA	NA	1486	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.005000	0.577114	
mm_102856.1	chr11	69399085	69399285	-	1	NA	NA	NA	-951	NM_025915	67020	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.020000	0.442786	
mm_6445.1	chr1	74001441	74001641	-	1	NA	NA	NA	122906	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.030000	0.651741	
mm_9496.1	chr1	173729830	173730030	-	1	NA	NA	NA	11879	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.000000	0.417910	
mm_92714.1	chr10	80797835	80798035	-	1	NA	NA	NA	691	NM_023900	78670	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.115000	0.701493	
mm_159001.1	chr1	153851044	153851244	-	1	NA	NA	NA	51	NM_178243	240817	Mm.439405	NM_178243	ENSMUSG00000045968	Teddm2	5830403L16Rik|AJ554213|Me9|e92	transmembrane epididymal family member 2	protein-coding	0.015000	0.512438	
mm_82710.1	chr9	24503115	24503315	-	1	NA	NA	NA	-75	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.180000	0.796020	
mm_31905.1	chr4	84697917	84698117	+	1	NA	NA	NA	-22931	NM_172870	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.010000	0.467662	
mm_163782.1	chr13	120258397	120258597	+	1	NA	NA	NA	-4598	NM_001310627	236546	Mm.247428	NM_199060	ENSMUSG00000095071	AF067061	-	cDNA sequence AF067061	protein-coding	0.020000	0.447761	
mm_90473.1	chr10	127849936	127850136	+	1	NA	NA	NA	108	NM_147222	216453	Mm.222953	NM_147222	ENSMUSG00000054052	Rdh19	RDH-S|RDH-S2|Rdhs	retinol dehydrogenase 19	protein-coding	0.010000	0.522388	
mm_171819.1	chr5	138702248	138702448	-	1	NA	NA	NA	-52733	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.025000	0.457711	
mm_54205.1	chr6	24956260	24956460	-	1	NA	NA	NA	-235	NM_177013	319832	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0.040000	0.671642	
mm_40972.1	chr5	77001471	77001671	+	1	NA	NA	NA	-2484	NM_206935	384185	Mm.451858	NM_206935	ENSMUSG00000063820	Arl9	1700110A09Rik	ADP-ribosylation factor-like 9	protein-coding	0.060000	0.557214	
mm_19528.1	chr2	94262946	94263146	-	1	NA	NA	NA	-1647	NR_030431	735259		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.015000	0.393035	
mm_34028.1	chr4	138075058	138075258	+	1	NA	NA	NA	63360	NR_126429	73563	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	0.010000	0.472637	
mm_103788.1	chr11	82845746	82845946	-	1	NA	NA	NA	-16803	NM_026097	67338	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.035000	0.587065	
mm_112203.1	chr12	113426753	113426953	-	1	NA	NA	NA	-62712	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.562189	
mm_154339.1	chrM	4315	4515	+	1	NA	NA	NA	NA	NA									0.010000	0.343284	
mm_15749.1	chr2	164237521	164237721	+	1	NA	NA	NA	720	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.015000	0.447761	
mm_79142.1	chr9	47658285	47658485	+	1	NA	NA	NA	128033	NM_018770	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.000000	0.378109	
mm_128563.1	chr15	56172321	56172521	-	1	NA	NA	NA	-265472	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding	0.030000	0.542289	
mm_159864.1	chr5	143651162	143651362	+	1	NA	NA	NA	21	NM_001163548	19159	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0.010000	0.497512	
mm_24250.1	chr3	89166982	89167182	+	1	NA	NA	NA	2287	NM_001163432	12748	Mm.288098	NM_007712	ENSMUSG00000068917	Clk2	AU041688	CDC-like kinase 2	protein-coding	0.060000	0.557214	
mm_1716.1	chr1	75236868	75237068	+	1	NA	NA	NA	266	NM_001159885	56812	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.050000	0.577114	47(GCCCTTTAGAGG,-,0.00),48(CCCTTTAGAGGT,+,0.00)
mm_47103.1	chr5	118413445	118413645	-	1	NA	NA	NA	-147174	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.005000	0.507463	
mm_17897.1	chr2	35100585	35100785	-	1	NA	NA	NA	0	NM_001243102	98870	Mm.415380	NM_178885	ENSMUSG00000035875	AI182371	AI046667	expressed sequence AI182371	protein-coding	0.015000	0.402985	
mm_112331.1	chr12	115912695	115912895	-	1	NA	NA	NA	-134929	NM_001004066	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0.000000	0.472637	
mm_116650.1	chr13	49183872	49184072	-	1	NA	NA	NA	-3575	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.020000	0.532338	
mm_7874.1	chr1	133009541	133009741	-	1	NA	NA	NA	15775	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	0.005000	0.393035	
mm_82872.1	chr9	32424025	32424225	-	1	NA	NA	NA	30140	NM_001168354	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.030000	0.532338	
mm_98694.1	chr11	96299138	96299338	+	1	NA	NA	NA	67	NM_008269	15414	Mm.215	NM_008269	ENSMUSG00000000690	Hoxb6	Hox-2.2	homeobox B6	protein-coding	0.100000	0.691542	
mm_37326.1	chr4	119422287	119422487	-	1	NA	NA	NA	33	NM_026494	106564	Mm.27245	NM_026494	ENSMUSG00000028636	Ppcs	6330579B17Rik|AI413471|AI790434	phosphopantothenoylcysteine synthetase	protein-coding	0.100000	0.661692	
mm_90102.1	chr10	116966265	116966465	+	1	NA	NA	NA	91	NR_027846	103175	Mm.27138	NR_027846	ENSMUSG00000031294	D630029K05Rik	AI314111|AI875589	RIKEN cDNA D630029K05 gene	ncRNA	0.015000	0.527363	
mm_110608.1	chr12	56536668	56536868	-	1	NA	NA	NA	140	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.045000	0.587065	
mm_20087.1	chr2	120731645	120731845	-	1	NA	NA	NA	-228	NM_026891	68968	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	0.020000	0.562189	
mm_120399.1	chr14	64720221	64720421	+	1	NA	NA	NA	67790	NM_001081177	16554	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.020000	0.452736	
mm_102133.1	chr11	53430656	53430856	-	1	NA	NA	NA	75	NM_025352	22272	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	0.100000	0.641791	
mm_146511.1	chr18	3337422	3337622	-	1	NA	NA	NA	67	NM_001110851	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.145000	0.726368	
mm_46005.1	chr5	90696028	90696228	-	1	NA	NA	NA	-55601	NM_001310656	73246	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.015000	0.402985	
mm_28473.1	chr3	92080822	92081022	-	1	NA	NA	NA	2220	NM_008508	16939	Mm.1121	NM_008508	ENSMUSG00000043165	Lor	AI036317|S77319	loricrin	protein-coding	0.080000	0.706468	
mm_115116.1	chr13	104178735	104178935	+	1	NA	NA	NA	-263	NM_030731	81003	Mm.244190	NM_030731	ENSMUSG00000021712	Trim23	6330516O20Rik|AI450195|Arfd1	tripartite motif-containing 23	protein-coding	0.075000	0.631841	
mm_22307.1	chr2	180381228	180381428	-	1	NA	NA	NA	-4276	NR_045331	622283	Mm.447602	NR_045331		Mir1a-1hg	EG622283|Gm6307	Mir1a-1 and Mir133a-2 host gene	ncRNA	0.010000	0.502488	
mm_573.1	chr1	38987673	38987873	+	1	NA	NA	NA	-41	NM_026850	68833	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	0.080000	0.681592	
mm_70698.1	chr8	15028662	15028862	+	1	NA	NA	NA	17316	NR_037972	434285	Mm.334425	NM_001007591	ENSMUSG00000049008	BB014433	-	expressed sequence BB014433	ncRNA	0.115000	0.676617	
mm_29150.1	chr3	105959125	105959325	-	1	NA	NA	NA	-273	NM_027432	70465	Mm.5110	NM_027432	ENSMUSG00000000561	Wdr77	2610003I18Rik|2610312E17Rik|C79984|p44/MEP50	WD repeat domain 77	protein-coding	0.085000	0.616915	
mm_59405.1	chr7	27028981	27029181	+	1	NA	NA	NA	-9	NM_133657	13085	Mm.20770	NM_133657	ENSMUSG00000060407	Cyp2a12	-	cytochrome P450, family 2, subfamily a, polypeptide 12	protein-coding	0.000000	0.507463	
mm_66641.1	chr7	45615387	45615587	-	1	NA	NA	NA	3	NM_020013	56636	Mm.143736	NM_020013	ENSMUSG00000030827	Fgf21	-	fibroblast growth factor 21	protein-coding	0.030000	0.557214	
mm_134548.1	chr16	19884176	19884376	-	1	NA	NA	NA	-2	NR_015488	68162	Mm.35159	NR_015488		A930003A15Rik	AI853191	RIKEN cDNA A930003A15 gene	ncRNA	0.015000	0.502488	
mm_151218.1	chr19	53677189	53677389	+	1	NA	NA	NA	-17	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.100000	0.731343	
mm_146095.1	chr18	73863532	73863732	+	1	NA	NA	NA	4247	NM_001305882	71263	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	0.040000	0.547264	
mm_54496.1	chr6	35510175	35510375	-	1	NA	NA	NA	29613	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.353234	-13(CTATTTTAAAGG,-,0.00)
mm_142928.1	chr17	53990552	53990752	-	1	NA	NA	NA	-21	NM_018751	20888	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	0.020000	0.502488	
mm_110018.1	chr12	16657177	16657377	-	1	NA	NA	NA	3807	NM_008747	18217	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT2R|NTRL	neurotensin receptor 2	protein-coding	0.005000	0.497512	-33(CCCTTTAAAAAG,+,0.00),-33(CCCTTTAAAAAG,-,0.00),-31(CTTTAAAAAGTG,+,0.00)
mm_30799.1	chr4	20008322	20008522	+	1	NA	NA	NA	93	NM_015767	50500	Mm.24375	NM_015767	ENSMUSG00000073988	Ttpa	alpha-TTP	tocopherol (alpha) transfer protein	protein-coding	0.110000	0.746269	
mm_80598.1	chr9	86467096	86467296	+	1	NA	NA	NA	42	NM_177208	320615	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0.165000	0.786070	
mm_86414.1	chr10	3391165	3391365	+	1	NA	NA	NA	25115	NM_133485	76142	Mm.308126	NM_133485	ENSMUSG00000040653	Ppp1r14c	6330514J04Rik|KEPI	protein phosphatase 1, regulatory (inhibitor) subunit 14c	protein-coding	0.010000	0.378109	
mm_143214.1	chr17	62882343	62882543	-	1	NA	NA	NA	-1126	NM_010109	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.055000	0.611940	
mm_46052.1	chr5	92137570	92137770	-	1	NA	NA	NA	-268	NM_019490	56041	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0.070000	0.592040	
mm_131505.1	chr16	17451864	17452064	+	1	NA	NA	NA	-21	NM_001277231	12929	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	0.090000	0.661692	
mm_121534.1	chr14	122375121	122375321	+	1	NA	NA	NA	75894	NR_033325	328479	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.015000	0.447761	
mm_35579.1	chr4	41740850	41741050	-	1	NA	NA	NA	409	NM_001286540	18391	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0.075000	0.651741	
mm_67341.1	chr7	79822056	79822256	-	1	NA	NA	NA	11429	NM_008589	17293	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0.005000	0.527363	
mm_20701.1	chr2	132945583	132945783	-	1	NA	NA	NA	353	NM_198029	241639	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0.035000	0.606965	
mm_157892.1	chrX	76301588	76301788	-	1	NA	NA	NA	37382	NM_001013760	238829	Mm.292319	NM_001013760	ENSMUSG00000071738	Cldn34b3	EG238829|Gm4937	claudin 34B3	protein-coding	0.000000	0.417910	
mm_85202.1	chr9	96752594	96752794	-	1	NA	NA	NA	137	NR_015511	319859	Mm.259909	NM_177020		E030011O05Rik	-	RIKEN cDNA E030011O05 gene	ncRNA	0.035000	0.606965	
mm_96313.1	chr11	63271306	63271506	+	1	NA	NA	NA	114663	NR_105772	102466632		NR_105772	ENSMUSG00000098829	Mir6354	Gm27282|mmu-mir-6354	microRNA 6354	ncRNA	0.010000	0.477612	
mm_41997.1	chr5	107830187	107830387	+	1	NA	NA	NA	125	NM_001276397	73318	Mm.441500	NM_028502	ENSMUSG00000063447	Ube2d2b	1700013N18Rik	ubiquitin-conjugating enzyme E2D 2B	protein-coding	0.055000	0.626866	
mm_117347.1	chr13	69611334	69611534	-	1	NA	NA	NA	29	NM_175283	78925	Mm.451912	NM_175283	ENSMUSG00000021594	Srd5a1	0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1	steroid 5 alpha-reductase 1	protein-coding	0.070000	0.666667	
mm_19279.1	chr2	85536581	85536781	-	1	NA	NA	NA	-17746	NM_001081664	228151	Mm.17636	NM_001081664	ENSMUSG00000075217	4833423E24Rik	Fads2p1|Gm113	RIKEN cDNA 4833423E24 gene	protein-coding	0.000000	0.432836	
mm_53707.1	chr6	143169827	143170027	+	1	NA	NA	NA	2697	NM_029250	75320	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0.005000	0.447761	
mm_128522.1	chr15	54278514	54278714	-	1	NA	NA	NA	-130	NM_008764	18383	Mm.15383	NM_008764	ENSMUSG00000063727	Tnfrsf11b	OCIF|Opg|TR1	tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	protein-coding	0.025000	0.592040	
mm_67045.1	chr7	67280504	67280704	-	1	NA	NA	NA	57988	NM_001191051	75099	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.005000	0.353234	
mm_60928.1	chr7	46847431	46847631	+	1	NA	NA	NA	449	NM_001136069	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.010000	0.398010	
mm_53317.1	chr6	129187062	129187262	+	1	NA	NA	NA	6547	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.000000	0.343284	
mm_53119.1	chr6	125100775	125100975	+	1	NA	NA	NA	3851	NR_106012	102466272		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	0.030000	0.557214	
mm_168918.1	chr12	58769936	58770136	+	1	NA	NA	NA	241981	NM_009147	20334	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	0.080000	0.686567	
mm_156857.1	chrX	164401742	164401942	+	1	NA	NA	NA	-17945	NM_011081	18700	Mm.3781	NM_011081	ENSMUSG00000031381	Piga	AI194334|Pig-a	phosphatidylinositol glycan anchor biosynthesis, class A	protein-coding	0.005000	0.398010	
mm_5352.1	chr1	25228724	25228924	-	1	NA	NA	NA	49130	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding	0.075000	0.597015	
mm_29140.1	chr3	105894524	105894724	-	1	NA	NA	NA	-9797	NM_009631	11542	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0.025000	0.477612	-31(GGCTATAAAAAG,-,0.00)
mm_141623.1	chr17	32895348	32895548	-	1	NA	NA	NA	-3845	NM_207245	240066	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0.030000	0.432836	
mm_96066.1	chr11	59706270	59706470	+	1	NA	NA	NA	33784	NR_045476	69320	Mm.443242	NR_045476	ENSMUSG00000086330	1700007J10Rik	4930573L17Rik	RIKEN cDNA 1700007J10 gene	ncRNA	0.020000	0.398010	
mm_55817.1	chr6	83053585	83053785	-	1	NA	NA	NA	-836	NR_125891	11993	Mm.386752	NM_007517	ENSMUSG00000068328	Aup1	AA589454	ancient ubiquitous protein 1	protein-coding	0.055000	0.562189	
mm_105131.1	chr11	101417321	101417521	-	1	NA	NA	NA	12	NM_144829	69684	Mm.146283	NM_144829	ENSMUSG00000075528	Aarsd1	1110069E20Rik|2310044P18Rik|AA589600|AlaX|AlaXp-II	alanyl-tRNA synthetase domain containing 1	protein-coding	0.125000	0.621891	
mm_84438.1	chr9	66096081	66096281	-	1	NA	NA	NA	-26450	NM_001025612	382083	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	0.010000	0.338308	
mm_166822.1	chr7	18065856	18066056	+	1	NA	NA	NA	27	NM_001162523	67315	Mm.46089	NM_026087	ENSMUSG00000030366	Ceacam12	1600031J20Rik|Ceacam12-C1|Ceacam12-C3|Ceacam12C1|Ceacam12C3	carcinoembryonic antigen-related cell adhesion molecule 12	protein-coding	0.005000	0.467662	
mm_8299.1	chr1	143702740	143702940	-	1	NA	NA	NA	53	NM_145991	214498	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	0.150000	0.771144	-6(CCTTATATAGCG,+,0.00)
mm_151580.1	chr19	61224319	61224519	+	1	NA	NA	NA	3999	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.015000	0.427861	
mm_84381.1	chr9	65422686	65422886	-	1	NA	NA	NA	-13	NM_178933	330962	Mm.335247	NM_178933	ENSMUSG00000053862	Slc51b	Ostb	solute carrier family 51, beta subunit	protein-coding	0.015000	0.572139	
mm_41741.1	chr5	102768617	102768817	+	1	NA	NA	NA	-93	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.015000	0.527363	
mm_107134.1	chr12	21286219	21286419	+	1	NA	NA	NA	22	NM_018813	54451	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	0.080000	0.592040	
mm_166336.1	chr5	114600942	114601142	-	1	NA	NA	NA	32791	NM_001004180	433940	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0.010000	0.522388	
mm_44652.1	chr5	28209994	28210194	-	1	NA	NA	NA	74	NM_001310511	269637	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.060000	0.552239	
mm_37551.1	chr4	125346869	125347069	-	1	NA	NA	NA	-143862	NM_001081097	14807	Mm.40896	NM_001081097	ENSMUSG00000001985	Grik3	9630027E11|GluK3|GluR7-3|Glur-7|Glur7	glutamate receptor, ionotropic, kainate 3	protein-coding	0.015000	0.467662	
mm_82882.1	chr9	32502428	32502628	-	1	NA	NA	NA	38924	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.010000	0.467662	
mm_65894.1	chr7	30090404	30090604	-	1	NA	NA	NA	6	NM_152814	72556	Mm.441512	NM_152814	ENSMUSG00000078768	Zfp566	2700043M03Rik|mszf4	zinc finger protein 566	protein-coding	0.070000	0.631841	
mm_120029.1	chr14	55824890	55825090	+	1	NA	NA	NA	195	NM_023699	73181	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	0.070000	0.671642	
mm_164768.1	chr17	86652863	86653063	-	1	NA	NA	NA	-100901	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.005000	0.542289	
mm_32013.1	chr4	94739430	94739630	+	1	NA	NA	NA	241	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	0.035000	0.512438	
mm_139633.1	chr17	57367530	57367730	+	1	NA	NA	NA	8944	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.407960	
mm_167256.1	chr8	25101517	25101717	+	1	NA	NA	NA	194	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.045000	0.611940	
mm_171230.1	chr3	66902627	66902827	+	1	NA	NA	NA	76084	NM_001302358	20429	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0.015000	0.497512	
mm_98038.1	chr11	85341030	85341230	+	1	NA	NA	NA	-12034	NM_001166642	192197	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.005000	0.338308	
mm_80055.1	chr9	69340692	69340892	+	1	NA	NA	NA	23455	NR_136934	102642202	Mm.415363	NR_136934	ENSMUSG00000086648	Gm15511	OTTMUSG00000023029	predicted gene 15511	ncRNA	0.005000	0.427861	
mm_132480.1	chr16	36828299	36828499	+	1	NA	NA	NA	-1	NM_177128	320299	Mm.222934	NM_177128	ENSMUSG00000022837	Iqcb1	6820449I09Rik|AV128382|NPHP5	IQ calmodulin-binding motif containing 1	protein-coding	0.105000	0.721393	
mm_116151.1	chr13	29984338	29984538	-	1	NA	NA	NA	-47	NM_001289920	13557	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.120000	0.776119	
mm_42421.1	chr5	115327062	115327262	+	1	NA	NA	NA	-15	NM_025573	108014	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0.150000	0.751244	-75(CCTTTAAGATCG,+,0.00),-65(CGCTTTAAAAAT,-,0.00),-64(GCTTTAAAAATC,+,0.00)
mm_114091.1	chr13	54633199	54633399	+	1	NA	NA	NA	11515	NM_178397	76577	Mm.194459	NM_178397	ENSMUSG00000025873	Faf2	2210404D11Rik|AI462440|Ubxd8|mKIAA0887	Fas associated factor family member 2	protein-coding	0.010000	0.358209	
mm_87020.1	chr10	28074743	28074943	+	1	NA	NA	NA	23	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0.120000	0.706468	
mm_99983.1	chr11	114675385	114675585	+	1	NA	NA	NA	17	NM_053273	117160	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.095000	0.701493	
mm_32923.1	chr4	119136964	119137164	+	1	NA	NA	NA	28319	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.015000	0.552239	
mm_5832.1	chr1	52817568	52817768	-	1	NA	NA	NA	20	NM_008384	16329	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	0.075000	0.696517	
mm_160384.1	chr8	45069037	45069237	+	1	NA	NA	NA	-73	NM_008639	17773	Mm.5133	NM_008639	ENSMUSG00000054764	Mtnr1a	MR|MelR	melatonin receptor 1A	protein-coding	0.055000	0.631841	-34(GGCCATAAAAAG,-,0.00),-32(CCATAAAAAGTG,+,0.00)
mm_105060.1	chr11	100715688	100715888	-	1	NA	NA	NA	1938	NM_029307	75482	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.010000	0.472637	
mm_42963.1	chr5	123130922	123131122	+	1	NA	NA	NA	1607	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.010000	0.537313	
mm_121891.1	chr14	21742806	21743006	-	1	NA	NA	NA	-27	NM_013849	27389	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.005000	0.572139	
mm_100772.1	chr11	4789678	4789878	-	1	NA	NA	NA	-43000	NM_138948	192650	Mm.207056	NM_138948	ENSMUSG00000009075	Cabp7	-	calcium binding protein 7	protein-coding	0.020000	0.562189	
mm_1386.1	chr1	66944827	66945027	+	1	NA	NA	NA	129	NM_021285	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.040000	0.587065	
mm_99115.1	chr11	100140841	100141041	+	1	NA	NA	NA	2758	NM_001313963	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.020000	0.587065	
mm_5745.1	chr1	45926431	45926631	-	1	NA	NA	NA	-937	NM_016917	53945	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.020000	0.512438	
mm_21912.1	chr2	166603594	166603794	-	1	NA	NA	NA	-69024	NR_105783	102465188		NR_105783	ENSMUSG00000098675	Mir6364	Gm27327|mmu-mir-6364	microRNA 6364	ncRNA	0.020000	0.467662	
mm_6945.1	chr1	85731119	85731319	-	1	NA	NA	NA	5387	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.010000	0.442786	
mm_160229.1	chr7	102195803	102196003	-	1	NA	NA	NA	13964	NM_001287167	269966	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	0.005000	0.388060	
mm_54361.1	chr6	31114711	31114911	-	1	NA	NA	NA	-51718	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.025000	0.487562	-95(CATTATAAAAAG,-,0.00)
mm_109872.1	chr12	4916109	4916309	-	1	NA	NA	NA	-1144	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.005000	0.412935	
mm_13361.1	chr2	103424725	103424925	+	1	NA	NA	NA	757	NM_010125	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.020000	0.477612	
mm_121266.1	chr14	103075833	103076033	+	1	NA	NA	NA	5717	NM_001033242	211286	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0.045000	0.447761	
mm_148909.1	chr19	6950656	6950856	+	1	NA	NA	NA	8194	NM_001285453	12015	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.095000	0.626866	-30(CCTTTTCGAGGA,+,0.00)
mm_12440.1	chr2	70690569	70690769	+	1	NA	NA	NA	29160	NM_027352	70231	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|ENSMUSG00000075299|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.020000	0.572139	
mm_92033.1	chr10	62486490	62486690	-	1	NA	NA	NA	8	NM_001113355	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.155000	0.796020	
mm_90424.1	chr10	127493095	127493295	+	1	NA	NA	NA	-8522	NM_177707	237611	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0.045000	0.557214	
mm_26742.1	chr3	6800210	6800410	-	1	NA	NA	NA	-179867	NM_027048	69347	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	0.090000	0.532338	-36(GGTTATAAAAGC,-,0.00)
mm_160789.1	chr10	129670494	129670694	-	1	NA	NA	NA	-77	NM_146285	258282	Mm.222982	NM_146285	ENSMUSG00000058513	Olfr801	MOR110-10	olfactory receptor 801	protein-coding	0.000000	0.243781	
mm_159969.1	chr6	97312305	97312505	-	1	NA	NA	NA	-59625	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.035000	0.527363	
mm_91198.1	chr10	21160270	21160470	-	1	NA	NA	NA	614	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.050000	0.577114	
mm_59057.1	chr7	19414791	19414991	+	1	NA	NA	NA	3797	NM_007710	12715	Mm.2375	NM_007710	ENSMUSG00000030399	Ckm	Ckmm|M-CK|MCK	creatine kinase, muscle	protein-coding	0.025000	0.567164	
mm_1300.1	chr1	64532889	64533089	+	1	NA	NA	NA	185	NM_001037726	12912	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.090000	0.641791	
mm_5898.1	chr1	54585357	54585557	-	1	NA	NA	NA	-27773	NM_001163314	241062	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.030000	0.477612	
mm_26505.1	chr3	145758830	145759030	+	1	NA	NA	NA	238	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.145000	0.756219	
mm_81522.1	chr9	110055042	110055242	+	1	NA	NA	NA	3121	NM_001311164	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.010000	0.363184	
mm_44689.1	chr5	30155007	30155207	-	1	NA	NA	NA	-127	NM_178878	97212	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	0.055000	0.572139	
mm_47764.1	chr5	131537675	131537875	-	1	NA	NA	NA	-230253	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.050000	0.562189	
mm_37735.1	chr4	129575192	129575392	-	1	NA	NA	NA	-1651	NM_001162433	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.005000	0.517413	
mm_85848.1	chr9	110653881	110654081	-	1	NA	NA	NA	180	NM_183276	235627	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0.125000	0.761194	
mm_120781.1	chr14	74641411	74641611	+	1	NA	NA	NA	671	NM_172812	15558	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	0.030000	0.432836	
mm_84098.1	chr9	58249647	58249847	-	1	NA	NA	NA	39	NM_178087	18854	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	0.040000	0.567164	
mm_75320.1	chr8	41416915	41417115	-	1	NA	NA	NA	103	NM_013522	14300	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	0.060000	0.582090	
mm_53837.1	chr6	148354555	148354755	+	1	NA	NA	NA	-1	NR_003634	66184	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	0.085000	0.656716	
mm_93424.1	chr10	108799762	108799962	-	1	NA	NA	NA	-99702	NM_203660	368203	Mm.452758	NM_203660		Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding	0.000000	0.417910	-62(CACTTTAAAAGA,-,0.00),-61(ACTTTAAAAGAG,+,0.00)
mm_87967.1	chr10	63416266	63416466	+	1	NA	NA	NA	-13732	NM_177612	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.025000	0.437811	
mm_70434.1	chr8	11556793	11556993	+	1	NA	NA	NA	436	NM_011919	26356	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.070000	0.626866	
mm_161366.1	chr14	62744477	62744677	-	1	NA	NA	NA	-15924	NR_045503	71000	Mm.399410	NR_045503	ENSMUSG00000097775	4931440J10Rik	-	RIKEN cDNA 4931440J10 gene	ncRNA	0.000000	0.308458	
mm_167603.1	chr9	51433199	51433399	+	1	NA	NA	NA	-104382	NM_027217	69809	Mm.75315	NM_027217	ENSMUSG00000036027	1810046K07Rik	-	RIKEN cDNA 1810046K07 gene	protein-coding	0.005000	0.432836	
mm_166094.1	chr4	141546682	141546882	+	1	NA	NA	NA	620	NR_030695	320456	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.150000	0.820896	
mm_125958.1	chr15	76266426	76266626	+	1	NA	NA	NA	-1563	NM_028852	74281	Mm.159156	NM_028852	ENSMUSG00000049653	Spatc1	1700084J23Rik|speriolin	spermatogenesis and centriole associated 1	protein-coding	0.005000	0.393035	
mm_60622.1	chr7	44668123	44668323	+	1	NA	NA	NA	2620	NM_001271540	71960	Mm.158289	NM_028021	ENSMUSG00000030739	Myh14	2400004E04Rik|II-C|NHMCII|NMHC II-C	myosin, heavy polypeptide 14	protein-coding	0.010000	0.587065	
mm_59637.1	chr7	28157550	28157750	+	1	NA	NA	NA	-12098	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.040000	0.467662	
mm_21352.1	chr2	157121811	157122011	-	1	NA	NA	NA	13311	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.030000	0.492537	
mm_147448.1	chr18	46525952	46526152	-	1	NA	NA	NA	-81	NM_173423	240263	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.100000	0.726368	
mm_96309.1	chr11	63158572	63158772	+	1	NA	NA	NA	25869	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.015000	0.278607	
mm_69641.1	chr7	138849945	138850145	-	1	NA	NA	NA	3659	NM_026391	52432	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	0.010000	0.487562	
mm_94516.1	chr11	8655538	8655738	+	1	NA	NA	NA	8897	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.000000	0.437811	
mm_7396.1	chr1	118299492	118299692	-	1	NA	NA	NA	11540	NM_011650	22099	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	0.000000	0.393035	
mm_20454.1	chr2	129364963	129365163	-	1	NA	NA	NA	-4839	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.010000	0.487562	
mm_111868.1	chr12	108001613	108001813	-	1	NA	NA	NA	1701	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.025000	0.393035	
mm_148245.1	chr18	80698081	80698281	-	1	NA	NA	NA	9992	NM_001164111	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.040000	0.631841	
mm_74569.1	chr8	11016196	11016396	-	1	NA	NA	NA	-7866	NM_001081212	384783	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.010000	0.388060	-35(GCTTATAAAAAC,+,0.00),-35(GCTTATAAAAAC,-,0.00)
mm_88023.1	chr10	67193451	67193651	+	1	NA	NA	NA	7801	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.000000	0.363184	0(GCTTTAATAATC,+,0.00)
mm_43391.1	chr5	135734866	135735066	+	1	NA	NA	NA	923	NR_106001	102466791		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.035000	0.616915	
mm_15630.1	chr2	162987380	162987580	+	1	NA	NA	NA	-1	NM_001291154	27219	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	0.020000	0.557214	
mm_110032.1	chr12	16875746	16875946	-	1	NA	NA	NA	-19132	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0.035000	0.517413	
mm_164999.1	chr19	20520072	20520272	+	1	NA	NA	NA	27457	NR_015502	320092	Mm.482524	NR_015502		E030003E18Rik	1700127G21Rik	RIKEN cDNA E030003E18 gene	ncRNA	0.005000	0.452736	64(CCATTTAGGGCT,+,0.00)
mm_118141.1	chr13	105054276	105054476	-	1	NA	NA	NA	554	NM_029879	52882	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.110000	0.686567	
mm_100896.1	chr11	6066029	6066229	-	1	NA	NA	NA	-381	NM_007595	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	0.040000	0.626866	-27(GCCTTTAGGGGA,+,0.00)
mm_94150.1	chr10	128743890	128744090	-	1	NA	NA	NA	66	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.110000	0.736318	
mm_161571.1	chr16	21891884	21892084	+	1	NA	NA	NA	15	NM_172821	71751	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0.005000	0.532338	
mm_68208.1	chr7	104400675	104400875	-	1	NA	NA	NA	-42129	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.005000	0.407960	
mm_26521.1	chr3	145924309	145924509	+	1	NA	NA	NA	147	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.085000	0.676617	
mm_32131.1	chr4	99158675	99158875	+	1	NA	NA	NA	-35159	NM_175029	242557	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.010000	0.472637	
mm_96823.1	chr11	69994639	69994839	+	1	NA	NA	NA	-1027	NM_001291125	78246	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.015000	0.467662	
mm_76118.1	chr8	80859144	80859344	-	1	NA	NA	NA	21235	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.030000	0.492537	
mm_87689.1	chr10	59403317	59403517	+	1	NA	NA	NA	-268	NM_023530	69836	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	0.015000	0.592040	
mm_166324.1	chr5	112257385	112257585	+	1	NA	NA	NA	1665	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.010000	0.661692	
mm_116376.1	chr13	40968616	40968816	-	1	NA	NA	NA	-32294	NM_026550	68083	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0.005000	0.492537	
mm_160261.1	chr7	109617061	109617261	-	1	NA	NA	NA	-14	NM_029811	76954	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.000000	0.467662	
mm_161497.1	chr15	88982714	88982914	+	1	NA	NA	NA	-180	NM_031260	83456	Mm.358791	NM_031260	ENSMUSG00000015365	Mov10l1	CHAMP|Csm	Moloney leukemia virus 10-like 1	protein-coding	0.065000	0.601990	
mm_74721.1	chr8	17438867	17439067	-	1	NA	NA	NA	96418	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.000000	0.432836	
mm_114560.1	chr13	74350241	74350441	+	1	NA	NA	NA	24	NM_001168658	67433	Mm.101586	NM_024201	ENSMUSG00000021578	Ccdc127	0610011N22Rik|5430420E17Rik|A430066A18|AI256405|AW050060|C130002N06	coiled-coil domain containing 127	protein-coding	0.095000	0.641791	85(GTCTTTAAAGTG,+,0.00)
mm_24116.1	chr3	88159628	88159828	+	1	NA	NA	NA	17356	NM_001310593	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.000000	0.427861	
mm_168483.1	chr1	14918902	14919102	-	1	NA	NA	NA	-140	NM_177781	277328	Mm.186329	NM_177781	ENSMUSG00000032769	Trpa1	Anktm1|TRPA1b	transient receptor potential cation channel, subfamily A, member 1	protein-coding	0.020000	0.457711	
mm_120013.1	chr14	55745700	55745900	+	1	NA	NA	NA	107	NM_026403	67842	Mm.180338	NM_026403	ENSMUSG00000019297	Nop9	2610027L16Rik	NOP9 nucleolar protein	protein-coding	0.160000	0.746269	
mm_118213.1	chr13	110279970	110280170	-	1	NA	NA	NA	136	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding	0.070000	0.601990	
mm_113260.1	chr13	28575646	28575846	+	1	NA	NA	NA	135127	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.000000	0.432836	
mm_33113.1	chr4	124737702	124737902	+	1	NA	NA	NA	-4048	NM_008385	16330	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	0.010000	0.562189	
mm_131509.1	chr16	17489597	17489797	+	1	NA	NA	NA	20	NM_175178	72168	Mm.40038	NM_175178	ENSMUSG00000022763	Aifm3	2810401C16Rik|AI840249|Aifl	apoptosis-inducing factor, mitochondrion-associated 3	protein-coding	0.120000	0.766169	
mm_117783.1	chr13	97022357	97022557	-	1	NA	NA	NA	11905	NM_025585	66479	Mm.390629	NM_025585	ENSMUSG00000052075	1700029F12Rik	-	RIKEN cDNA 1700029F12 gene	protein-coding	0.010000	0.487562	
mm_160724.1	chr10	70266712	70266912	+	1	NA	NA	NA	21536	NM_025807	66859	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.010000	0.437811	
mm_53171.1	chr6	125342699	125342899	+	1	NA	NA	NA	-6924	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.020000	0.547264	
mm_86200.1	chr9	119978194	119978394	-	1	NA	NA	NA	6364	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.005000	0.542289	
mm_172128.1	chr6	3201520	3201720	+	1	NA	NA	NA	-86899	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.045000	0.532338	
mm_165323.1	chr2	110050392	110050592	-	1	NA	NA	NA	-13	NR_040508	75517	Mm.363927	NR_040508	ENSMUSG00000086186	Ccdc34os	1700024P03Rik	coiled-coil domain containing 34, opposite strand	ncRNA	0.005000	0.422886	-6(GCTTTTAGAATC,+,0.00)
mm_152744.1	chr19	19078984	19079184	-	1	NA	NA	NA	32112	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.025000	0.388060	
mm_102477.1	chr11	60046405	60046605	-	1	NA	NA	NA	-16	NM_001290011	18618	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	0.075000	0.631841	
mm_128019.1	chr15	24605424	24605624	-	1	NA	NA	NA	808240	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.040000	0.512438	
mm_24037.1	chr3	87796860	87797060	+	1	NA	NA	NA	9	NM_011832	23920	Mm.42041	NM_011832	ENSMUSG00000005640	Insrr	Irr	insulin receptor-related receptor	protein-coding	0.100000	0.686567	
mm_171014.1	chr2	83953370	83953570	-	1	NA	NA	NA	-12244	NM_027964	71861	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.020000	0.497512	
mm_64951.1	chr7	16387716	16387916	-	1	NA	NA	NA	80	NM_001285892	56459	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	0.130000	0.706468	
mm_45716.1	chr5	84417231	84417431	-	1	NA	NA	NA	51	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.155000	0.761194	
mm_39159.1	chr4	155561795	155561995	-	1	NA	NA	NA	-497	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.005000	0.462687	
mm_32705.1	chr4	116075444	116075644	+	1	NA	NA	NA	275	NM_153521	230654	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	0.105000	0.716418	
mm_123903.1	chr14	73217076	73217276	-	1	NA	NA	NA	-10325	NR_030459	751541		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.005000	0.467662	
mm_163045.1	chr11	54910016	54910216	+	1	NA	NA	NA	7262	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.025000	0.626866	
mm_59914.1	chr7	30417261	30417461	+	1	NA	NA	NA	2493	NM_011827	23900	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	0.015000	0.472637	-26(TTTTTTAAGGAG,+,0.00)
mm_111273.1	chr12	85339269	85339469	-	1	NA	NA	NA	-7	NM_145138	217718	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.090000	0.681592	
mm_79742.1	chr9	62351360	62351560	+	1	NA	NA	NA	10117	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.005000	0.442786	10(GTGCTTTAAAGG,-,0.00),11(TGCTTTAAAGGG,-,0.00),12(GCTTTAAAGGGA,+,0.00)
mm_5195.1	chr1	13372346	13372546	-	1	NA	NA	NA	-17	NM_001302702	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.065000	0.646766	
mm_123958.1	chr14	74811336	74811536	-	1	NA	NA	NA	79139	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.005000	0.427861	
mm_78273.1	chr9	22017511	22017711	+	1	NA	NA	NA	14623	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.020000	0.497512	
mm_76330.1	chr8	84706141	84706341	-	1	NA	NA	NA	4784	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.040000	0.343284	
mm_128837.1	chr15	68361997	68362197	-	1	NA	NA	NA	-20808	NR_029718	387228		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0.035000	0.537313	
mm_19065.1	chr2	77520611	77520811	-	1	NA	NA	NA	-1045	NM_001113400	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.010000	0.353234	-99(CTCCTTAAAAGA,-,0.00)
mm_927.1	chr1	55237123	55237323	+	1	NA	NA	NA	46	NM_175439	212679	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.145000	0.701493	
mm_9260.1	chr1	171607291	171607491	-	1	NA	NA	NA	19	NM_001277968	17085	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	0.030000	0.472637	
mm_126150.1	chr15	78406614	78406814	+	1	NA	NA	NA	2	NM_001162493	246221	Mm.294215	NM_138670	ENSMUSG00000071711	Mpst	Mst	mercaptopyruvate sulfurtransferase	protein-coding	0.070000	0.671642	
mm_163655.1	chr13	71106361	71106561	-	1	NA	NA	NA	-628	NR_130325	100316804		NR_130325	ENSMUSG00000080580	Mir466f-4	Mirn466f-4|mmu-mir-466f-4	microRNA 466f-4	ncRNA	0.015000	0.532338	
mm_22785.1	chr3	22076763	22076963	+	1	NA	NA	NA	211	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.130000	0.776119	
mm_13644.1	chr2	114050294	114050494	+	1	NA	NA	NA	2481	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.020000	0.537313	
mm_71969.1	chr8	70534853	70535053	+	1	NA	NA	NA	-4722	NM_007924	13716	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0.020000	0.621891	
mm_123779.1	chr14	70323691	70323891	-	1	NA	NA	NA	24642	NM_001135152	213053	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0.030000	0.592040	-31(TCTTTAATGGGC,+,0.00)
mm_7256.1	chr1	93754734	93754934	-	1	NA	NA	NA	4	NM_025920	67026	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	0.170000	0.766169	
mm_79902.1	chr9	65398444	65398644	+	1	NA	NA	NA	56	NM_001033158	70784	Mm.35827	NM_001033158	ENSMUSG00000041696	Rasl12	4631404I11Rik	RAS-like, family 12	protein-coding	0.090000	0.686567	
mm_36948.1	chr4	109071181	109071381	-	1	NA	NA	NA	46755	NM_173350	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.005000	0.358209	
mm_151430.1	chr19	57117313	57117513	+	1	NA	NA	NA	1611	NM_001347459	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.015000	0.492537	
mm_163679.1	chr13	92021620	92021820	-	1	NA	NA	NA	-33678	NM_009027	19418	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0.000000	0.248756	-85(GCTTAAAAAGTT,+,0.00)
mm_86360.1	chr9	123760123	123760323	-	1	NA	NA	NA	-6988	NM_009913	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.005000	0.368159	60(ATTTTTATAGTC,+,0.00)
mm_43720.1	chr5	139472938	139473138	+	1	NA	NA	NA	11453	NM_133349	100494	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.005000	0.517413	
mm_45948.1	chr5	90339663	90339863	-	1	NA	NA	NA	26422	NM_030886	81702	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0.015000	0.477612	
mm_156095.1	chrX	112311291	112311491	+	1	NA	NA	NA	39	NM_026565	68117	Mm.161014	NM_026565	ENSMUSG00000025525	Apool	6720473G16Rik|9430083G14Rik|E130106L15Rik	apolipoprotein O-like	protein-coding	0.055000	0.572139	
mm_62299.1	chr7	100159178	100159378	+	1	NA	NA	NA	1	NM_026010	67164	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	0.105000	0.696517	
mm_93373.1	chr10	105459367	105459567	-	1	NA	NA	NA	115012	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.005000	0.353234	
mm_171453.1	chr4	145510656	145510856	+	1	NA	NA	NA	-3	NM_001324553	101056073	Mm.276881	NM_001324553	ENSMUSG00000078503	LOC101056073	-	zinc finger protein 501-like	protein-coding	0.020000	0.507463	
mm_36455.1	chr4	82505150	82505350	-	1	NA	NA	NA	529	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.075000	0.592040	
mm_120162.1	chr14	60732934	60733134	+	1	NA	NA	NA	130	NM_001310594	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.050000	0.626866	
mm_52140.1	chr6	97971143	97971343	+	1	NA	NA	NA	-20540	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.010000	0.363184	
mm_172022.1	chr6	115808990	115809190	+	1	NA	NA	NA	-347	NM_172086	19951	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	0.020000	0.467662	
mm_141188.1	chr17	26939351	26939551	-	1	NA	NA	NA	7	NR_104458	67675	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	0.080000	0.626866	
mm_169342.1	chr14	13938167	13938367	-	1	NA	NA	NA	23046	NM_001285780	66231	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.025000	0.477612	-28(CTTTAAATACCC,+,0.00)
mm_9884.1	chr1	186623651	186623851	-	1	NA	NA	NA	-65070	NR_131158	320449	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.005000	0.368159	-46(GTGTATTAAAAG,-,0.00)
mm_65612.1	chr7	27508001	27508201	-	1	NA	NA	NA	8777	NM_019412	19153	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	0.070000	0.621891	
mm_77852.1	chr9	5308758	5308958	+	1	NA	NA	NA	9	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.015000	0.492537	
mm_70742.1	chr8	19142508	19142708	+	1	NA	NA	NA	1849	NM_001286493	546038	Mm.99206	NM_001034905	ENSMUSG00000059463	Spag11b	EG546038|Ep2c/h|Spag11c/h	sperm associated antigen 11B	protein-coding	0.000000	0.353234	
mm_65345.1	chr7	24988210	24988410	-	1	NA	NA	NA	-643	NR_106014	102465634		NR_106014	ENSMUSG00000099258	Mir7047	Gm27270|mmu-mir-7047	microRNA 7047	ncRNA	0.020000	0.502488	
mm_5455.1	chr1	36274356	36274556	-	1	NA	NA	NA	-1031	NM_153408	214854	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.005000	0.502488	
mm_44878.1	chr5	34636415	34636615	-	1	NA	NA	NA	599	NM_026660	68294	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	0.035000	0.572139	
mm_2946.1	chr1	132342201	132342401	+	1	NA	NA	NA	25647	NM_001311108	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.010000	0.527363	
mm_37403.1	chr4	121324820	121325020	-	1	NA	NA	NA	-3	NM_001033791	545677	Mm.372731	NM_001033791	ENSMUSG00000073764	Gm12888	OTTMUSG00000008911	predicted gene 12888	protein-coding	0.010000	0.557214	
mm_120250.1	chr14	63003292	63003492	+	1	NA	NA	NA	5315	NM_001039125	654465	Mm.424929	NM_001039125	ENSMUSG00000075573	Defb47	Defb41|EG654465	defensin beta 47	protein-coding	0.000000	0.462687	
mm_88406.1	chr10	76721823	76722023	+	1	NA	NA	NA	4121	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.025000	0.567164	
mm_83308.1	chr9	44041288	44041488	-	1	NA	NA	NA	-1996	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.010000	0.497512	
mm_94133.1	chr10	128696135	128696335	-	1	NA	NA	NA	33	NM_177411	19344	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	0.065000	0.656716	
mm_143083.1	chr17	57076955	57077155	-	1	NA	NA	NA	1455	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.015000	0.547264	
mm_127663.1	chr15	102520702	102520902	+	1	NA	NA	NA	2610	NM_009319	21357	Mm.291485	NM_009319	ENSMUSG00000023051	Tarbp2	Prbp|TRBP	TARBP2, RISC loading complex RNA binding subunit	protein-coding	0.000000	0.522388	
mm_2983.1	chr1	133131226	133131426	+	1	NA	NA	NA	160	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.125000	0.691542	
mm_143075.1	chr17	57031446	57031646	-	1	NA	NA	NA	-39	NM_010613	16549	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0.125000	0.711443	
mm_84583.1	chr9	69760752	69760952	-	1	NA	NA	NA	88	NM_022378	64290	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	0.060000	0.572139	
mm_41943.1	chr5	105731677	105731877	+	1	NA	NA	NA	30967	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.030000	0.547264	
mm_113403.1	chr13	33953109	33953309	+	1	NA	NA	NA	-11450	NM_001163239	18105	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	NAD(P)H dehydrogenase, quinone 2	protein-coding	0.005000	0.492537	
mm_84888.1	chr9	79759760	79759960	-	1	NA	NA	NA	-7	NM_009945	12866	Mm.152627	NM_009945	ENSMUSG00000032330	Cox7a2	COX7AL|Cox7a3|CoxVIIa-L	cytochrome c oxidase subunit VIIa 2	protein-coding	0.100000	0.656716	
mm_82439.1	chr9	15279769	15279969	-	1	NA	NA	NA	-2	NM_144933	234959	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0.125000	0.676617	
mm_127941.1	chr15	10713441	10713641	-	1	NA	NA	NA	-1	NM_030690	75646	Mm.212395	NM_030690	ENSMUSG00000022246	Rai14	1700008J19Rik|1700020L11Rik|Ankycorbin|Norpeg|mKIAA1334	retinoic acid induced 14	protein-coding	0.020000	0.487562	
mm_154732.1	chrX	9747628	9747828	+	1	NA	NA	NA	-84745	NM_025975	67117	Mm.29150	NM_025975	ENSMUSG00000031176	Dynlt3	2310075M16Rik|AU042796|Tcte1l	dynein light chain Tctex-type 3	protein-coding	0.065000	0.646766	
mm_68055.1	chr7	101836862	101837062	-	1	NA	NA	NA	862	NM_001122739	16332	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0.105000	0.701493	
mm_55758.1	chr6	78378903	78379103	-	1	NA	NA	NA	-138	NM_013893	30053	Mm.33691	NM_013893	ENSMUSG00000068341	Reg3d	INGAP|Ingaprp	regenerating islet-derived 3 delta	protein-coding	0.000000	0.482587	
mm_100924.1	chr11	6469880	6470080	-	1	NA	NA	NA	6096	NM_011221	19291	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0.005000	0.393035	
mm_88064.1	chr10	67647316	67647516	+	1	NA	NA	NA	-98461	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.015000	0.457711	
mm_33230.1	chr4	126830563	126830763	+	1	NA	NA	NA	76893	NM_001035526	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.010000	0.313433	
mm_135586.1	chr16	50578435	50578635	-	1	NA	NA	NA	-11968	NR_040566	75211	Mm.399337	NR_040566		4930542D17Rik	-	RIKEN cDNA 4930542D17 gene	ncRNA	0.015000	0.407960	-2(TTCTATTAAAAC,-,0.00)
mm_125752.1	chr15	73749489	73749689	+	1	NA	NA	NA	1563	NM_008975	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.005000	0.557214	
mm_128228.1	chr15	36555489	36555689	-	1	NA	NA	NA	-17	NM_025712	66696	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	0.065000	0.696517	
mm_118191.1	chr13	107782496	107782696	-	1	NA	NA	NA	-21509	NR_029759	723929		NR_029759	ENSMUSG00000065425	Mir325	Mirn325|mmu-mir-325	microRNA 325	ncRNA	0.005000	0.487562	
mm_9495.1	chr1	173729659	173729859	-	1	NA	NA	NA	12050	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.000000	0.442786	
mm_52265.1	chr6	108371642	108371842	+	1	NA	NA	NA	-118001	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.005000	0.407960	
mm_121715.1	chr14	16249068	16249268	-	1	NA	NA	NA	-146	NM_021504	59007	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	0.085000	0.636816	
mm_99940.1	chr11	111027379	111027579	+	1	NA	NA	NA	3619	NM_001252208	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.005000	0.422886	
mm_73279.1	chr8	104733911	104734111	+	1	NA	NA	NA	8	NM_133960	102022	Mm.212983	NM_133960	ENSMUSG00000055730	Ces2a	9130231C15Rik|AI266984|Ces6	carboxylesterase 2A	protein-coding	0.005000	0.462687	
mm_67225.1	chr7	74549353	74549553	-	1	NA	NA	NA	5327	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.005000	0.338308	
mm_41489.1	chr5	92127254	92127454	+	1	NA	NA	NA	-10584	NM_019490	56041	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0.030000	0.527363	
mm_123244.1	chr14	60251353	60251553	-	1	NA	NA	NA	-75	NM_170591	71844	Mm.258051	NM_170591	ENSMUSG00000063895	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	0.140000	0.711443	
mm_115179.1	chr13	108326429	108326629	+	1	NA	NA	NA	10192	NM_178683	218581	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.035000	0.542289	
mm_150243.1	chr19	34085357	34085557	+	1	NA	NA	NA	-15486	NM_023903	78753	Mm.195937	NM_023903	ENSMUSG00000056078	Lipm	4632427C23Rik|AW227514|Lipl3	lipase, family member M	protein-coding	0.000000	0.278607	
mm_159139.1	chr2	85353625	85353825	-	1	NA	NA	NA	199	NM_001011534	258166	Mm.389313	NM_001011534	ENSMUSG00000075222	Olfr988	MOR203-5P	olfactory receptor 988	protein-coding	0.005000	0.383085	
mm_65435.1	chr7	25369621	25369821	-	1	NA	NA	NA	3	NM_001081375	72383	Mm.34382	NM_028219	ENSMUSG00000063651	Cnfn	2210418J09Rik	cornifelin	protein-coding	0.015000	0.592040	-35(GCCCATATAAGC,-,0.00)
mm_31944.1	chr4	86670099	86670299	+	1	NA	NA	NA	-140	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.020000	0.611940	
mm_133005.1	chr16	55973693	55973893	+	1	NA	NA	NA	-11	NM_173026	271377	Mm.282814	NM_173026	ENSMUSG00000022601	Zbtb11	9230110G02Rik|ZNF-U69274	zinc finger and BTB domain containing 11	protein-coding	0.115000	0.691542	
mm_140979.1	chr17	24707539	24707739	-	1	NA	NA	NA	14	NM_145396	213773	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	0.085000	0.641791	
mm_156334.1	chrX	139008650	139008850	+	1	NA	NA	NA	76486	NM_177920	331535	Mm.211704	NM_177920	ENSMUSG00000031271	Serpina7	C730040N12Rik|Tbg	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7	protein-coding	0.005000	0.313433	
mm_22791.1	chr3	22155477	22155677	+	1	NA	NA	NA	78925	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.010000	0.313433	
mm_55566.1	chr6	71360825	71361025	-	1	NA	NA	NA	-12502	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.015000	0.517413	
mm_115476.1	chr13	119488599	119488799	+	1	NA	NA	NA	-161	NM_001177666	633640	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	0.070000	0.681592	
mm_117692.1	chr13	94294876	94295076	-	1	NA	NA	NA	-9145	NM_001346609	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.010000	0.522388	
mm_124756.1	chr15	6644673	6644873	+	1	NA	NA	NA	-63608	NM_030168	78757	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.025000	0.402985	
mm_77136.1	chr8	111393722	111393922	-	1	NA	NA	NA	-1	NM_178086	338521	Mm.41083	NM_178086	ENSMUSG00000033579	Fa2h	FAAH|Faxdc1|G630055L08Rik	fatty acid 2-hydroxylase	protein-coding	0.115000	0.741294	
mm_36277.1	chr4	63743927	63744127	-	1	NA	NA	NA	1086	NM_177371	326623	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0.005000	0.422886	
mm_119774.1	chr14	54176132	54176332	+	1	NA	NA	NA	77697	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.467662	
mm_118126.1	chr13	104228741	104228941	-	1	NA	NA	NA	3	NM_172807	238831	Mm.98910	NM_172807	ENSMUSG00000021713	Ppwd1	4632422M10Rik|A330090G21Rik	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding	0.115000	0.636816	
mm_94040.1	chr10	128082875	128083075	-	1	NA	NA	NA	-332	NM_016774	11947	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	-	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	0.055000	0.542289	
mm_126353.1	chr15	79928053	79928253	+	1	NA	NA	NA	4493	NM_144811	52609	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	0.030000	0.497512	
mm_124781.1	chr15	7442384	7442584	+	1	NA	NA	NA	-44089	NM_001289498	268780	Mm.203208	NM_178748	ENSMUSG00000042961	Egflam	5930412K08|AU040377	EGF-like, fibronectin type III and laminin G domains	protein-coding	0.025000	0.452736	
mm_52295.1	chr6	108782990	108783190	+	1	NA	NA	NA	31	NM_026011	67166	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0.135000	0.746269	
mm_40324.1	chr5	43908508	43908708	+	1	NA	NA	NA	39799	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.000000	0.388060	
mm_20100.1	chr2	121036662	121036862	-	1	NA	NA	NA	115	NM_013513	13828	Mm.240051	NM_013513	ENSMUSG00000023216	Epb42	Epb4.2	erythrocyte membrane protein band 4.2	protein-coding	0.010000	0.562189	
mm_2802.1	chr1	130851625	130851825	+	1	NA	NA	NA	-14052	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.000000	0.452736	
mm_166906.1	chr7	28838617	28838817	+	1	NA	NA	NA	4547	NM_010707	16857	Mm.210336	NM_010707		Lgals6	galectin-6	lectin, galactose binding, soluble 6	protein-coding	0.020000	0.497512	
mm_142519.1	chr17	46270758	46270958	-	1	NA	NA	NA	12168	NM_001252475	74094	Mm.284594	NM_028751	ENSMUSG00000012296	Tjap1	0610041D19Rik|AI415281|AW121008|Pilt|Tjp4	tight junction associated protein 1	protein-coding	0.045000	0.587065	
mm_142759.1	chr17	49033220	49033420	-	1	NA	NA	NA	80213	NR_038141	69311	Mm.46140	NR_038141	ENSMUSG00000101012	1700008K24Rik	-	RIKEN cDNA 1700008K24 gene	ncRNA	0.005000	0.522388	
mm_106143.1	chr11	116532996	116533196	-	1	NA	NA	NA	-142	NM_025367	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.095000	0.701493	
mm_75304.1	chr8	41118625	41118825	-	1	NA	NA	NA	-4058	NM_001286413	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.025000	0.452736	
mm_66587.1	chr7	45395122	45395322	-	1	NA	NA	NA	520	NM_009224	20637	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	0.035000	0.497512	
mm_135265.1	chr16	38294749	38294949	-	1	NA	NA	NA	-25	NM_001098404	18171	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0.010000	0.472637	
mm_14179.1	chr2	126910275	126910475	+	1	NA	NA	NA	-7990	NR_106202	102466258		NR_106202	ENSMUSG00000098896	Mir3473g	Gm27751|mmu-mir-3473g	microRNA 3473g	ncRNA	0.010000	0.487562	
mm_3813.1	chr1	158958234	158958434	+	1	NA	NA	NA	-896	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding	0.000000	0.467662	
mm_107839.1	chr12	69296841	69297041	+	1	NA	NA	NA	260	NM_027117	69554	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0.140000	0.731343	
mm_101622.1	chr11	35915478	35915678	-	1	NA	NA	NA	64511	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.020000	0.537313	
mm_2031.1	chr1	87190577	87190777	+	1	NA	NA	NA	80	NM_021600	11447	Mm.2811	NM_021600	ENSMUSG00000026251	Chrnd	Achr-4|Acrd|L10076	cholinergic receptor, nicotinic, delta polypeptide	protein-coding	0.005000	0.582090	
mm_12182.1	chr2	65189469	65189669	+	1	NA	NA	NA	49057	NM_177025	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.025000	0.577114	
mm_464.1	chr1	36308174	36308374	+	1	NA	NA	NA	541	NM_001172205	214855	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.045000	0.487562	
mm_68332.1	chr7	106504078	106504278	-	1	NA	NA	NA	-63105	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.333333	9(ACCTCTATAAGA,-,0.00)
mm_62996.1	chr7	120739433	120739633	+	1	NA	NA	NA	-24	NM_177697	233813	Mm.389939	NM_177697	ENSMUSG00000030889	Vwa3a	E030013G06Rik	von Willebrand factor A domain containing 3A	protein-coding	0.005000	0.522388	
mm_118684.1	chr14	22114229	22114429	+	1	NA	NA	NA	94617	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.010000	0.398010	23(CCCTTAAAACAC,+,0.00)
mm_55947.1	chr6	85137662	85137862	-	1	NA	NA	NA	2	NM_011467	20751	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|ENSMUSG00000071345|Gm10328	sepiapterin reductase	protein-coding	0.075000	0.656716	
mm_69684.1	chr7	139989177	139989377	-	1	NA	NA	NA	-2403	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.020000	0.552239	
mm_63546.1	chr7	128064690	128064890	+	1	NA	NA	NA	2150	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.005000	0.388060	
mm_77428.1	chr8	121108284	121108484	-	1	NA	NA	NA	-5	NM_001166482	234814	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	0.105000	0.656716	
mm_120990.1	chr14	79301060	79301260	+	1	NA	NA	NA	475	NM_025427	66214	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	0.095000	0.616915	
mm_72218.1	chr8	72688333	72688533	+	1	NA	NA	NA	-34837	NM_001113248	20467	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0.000000	0.477612	
mm_91205.1	chr10	21161312	21161512	-	1	NA	NA	NA	-428	NM_010848	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.040000	0.507463	
mm_42722.1	chr5	120587629	120587829	+	1	NA	NA	NA	884	NM_145853	252972	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.030000	0.562189	
mm_38125.1	chr4	134563279	134563479	-	1	NA	NA	NA	4472	NR_105829	102465216		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.020000	0.427861	
mm_108.1	chr1	9601187	9601387	+	1	NA	NA	NA	20	NM_178399	76982	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	0.030000	0.422886	
mm_58719.1	chr7	13023287	13023487	+	1	NA	NA	NA	-765	NM_011588	21849	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	0.055000	0.636816	
mm_103496.1	chr11	76571393	76571593	-	1	NA	NA	NA	-109	NM_198895	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.120000	0.800995	
mm_33810.1	chr4	135152909	135153109	+	1	NA	NA	NA	32364	NM_019732	12399	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.115000	0.716418	
mm_58101.1	chr6	137570697	137570897	-	1	NA	NA	NA	212	NM_001271595	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.030000	0.522388	
mm_144331.1	chr18	13006843	13007043	+	1	NA	NA	NA	-47	NM_153087	225192	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0.000000	0.402985	
mm_96223.1	chr11	62511647	62511847	+	1	NA	NA	NA	27514	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.010000	0.582090	
mm_106670.1	chr11	121547980	121548180	-	1	NA	NA	NA	-28738	NM_178763	319530	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.020000	0.477612	
mm_150563.1	chr19	39510784	39510984	+	1	NA	NA	NA	62	NM_010003	13098	Mm.42101	NM_010003	ENSMUSG00000025003	Cyp2c39	CYPIIC39	cytochrome P450, family 2, subfamily c, polypeptide 39	protein-coding	0.010000	0.472637	-68(TGCTATAAAAGG,-,0.00)
mm_76695.1	chr8	94180141	94180341	-	1	NA	NA	NA	1152	NM_013602	17748	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.060000	0.512438	
mm_147591.1	chr18	56572774	56572974	-	1	NA	NA	NA	3	NM_019996	56698	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	0.115000	0.716418	
mm_23665.1	chr3	68494189	68494389	+	1	NA	NA	NA	108	NM_001282044	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.060000	0.582090	
mm_61228.1	chr7	64501981	64502181	+	1	NA	NA	NA	-57	NM_001291166	11784	Mm.4657	NM_007461	ENSMUSG00000030519	Apba2	X11-like|X11L|XllL|mXllL	amyloid beta (A4) precursor protein-binding, family A, member 2	protein-coding	0.165000	0.766169	
mm_113773.1	chr13	44850849	44851049	+	1	NA	NA	NA	119678	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.005000	0.303483	
mm_108807.1	chr12	92809483	92809683	+	1	NA	NA	NA	635240	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0.005000	0.432836	60(TAGCTTAAAAGC,-,0.00)
mm_52670.1	chr6	117906982	117907182	+	1	NA	NA	NA	300	NM_133834	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.090000	0.676617	
mm_172953.1	chr9	87255191	87255391	-	1	NA	NA	NA	241	NM_199316	382090	Mm.335338	NM_199316	ENSMUSG00000056919	Cep162	4922501C03Rik|mKIAA1009	centrosomal protein 162	protein-coding	0.065000	0.651741	
mm_92606.1	chr10	80117021	80117221	-	1	NA	NA	NA	1318	NM_001301854	20869	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.045000	0.592040	57(GGGTAGATAAGG,-,0.00)
mm_25590.1	chr3	116890541	116890741	+	1	NA	NA	NA	28961	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.005000	0.407960	
mm_153087.1	chr19	32389560	32389760	-	1	NA	NA	NA	444	NR_033198	67188	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	0.070000	0.616915	
mm_83294.1	chr9	43205760	43205960	-	1	NA	NA	NA	-105	NM_011139	18988	Mm.436650	NM_011139	ENSMUSG00000032015	Pou2f3	Epoc-1|Oct-11a|Oct11|Otf-11|Otf11|Skin|Skin-1a|Skn-1a|Skn-li	POU domain, class 2, transcription factor 3	protein-coding	0.105000	0.771144	
mm_50527.1	chr6	49045268	49045468	+	1	NA	NA	NA	8850	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.025000	0.527363	
mm_9970.1	chr1	191184904	191185104	-	1	NA	NA	NA	-1671	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.065000	0.641791	
mm_143077.1	chr17	57044000	57044200	-	1	NA	NA	NA	-2446	NM_175333	103775	Mm.33647	NM_175333	ENSMUSG00000011486	Slc25a41	4933406J04Rik|AI507137	solute carrier family 25, member 41	protein-coding	0.000000	0.537313	
mm_128417.1	chr15	45114351	45114551	-	1	NA	NA	NA	483	NM_026200	67498	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding	0.075000	0.671642	
mm_36759.1	chr4	101355807	101356007	-	1	NA	NA	NA	341	NR_040708	77866	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0.030000	0.552239	
mm_3656.1	chr1	153115942	153116142	+	1	NA	NA	NA	70405	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.005000	0.452736	
mm_146400.1	chr18	82910828	82911028	+	1	NA	NA	NA	49	NM_183033	329003	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.160000	0.796020	
mm_21059.1	chr2	152686710	152686910	-	1	NA	NA	NA	-338	NM_025543	66405	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	0.080000	0.572139	
mm_103192.1	chr11	70619101	70619301	-	1	NA	NA	NA	-7	NM_009603	11448	Mm.4980	NM_009603	ENSMUSG00000014609	Chrne	AChrepsilon|Acre|nAChRE	cholinergic receptor, nicotinic, epsilon polypeptide	protein-coding	0.005000	0.567164	
mm_158077.1	chrX	101264839	101265039	-	1	NA	NA	NA	-947	NM_001317221	245536	Mm.212463	NM_001033362	ENSMUSG00000090141	Gm614	-	predicted gene 614	protein-coding	0.020000	0.572139	-86(GTGTCTAAAGGG,-,0.00)
mm_102861.1	chr11	69401253	69401453	-	1	NA	NA	NA	-3119	NM_025915	67020	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.055000	0.557214	
mm_83441.1	chr9	45000963	45001163	-	1	NA	NA	NA	8527	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.015000	0.517413	
mm_147605.1	chr18	56867501	56867701	-	1	NA	NA	NA	57947	NM_177115	320253	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0.000000	0.348259	
mm_67259.1	chr7	75773970	75774170	-	1	NA	NA	NA	-74268	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.000000	0.283582	34(TTCTTTAAGAGG,-,0.00),35(TCTTTAAGAGGA,+,0.00)
mm_165988.1	chr4	109114456	109114656	+	1	NA	NA	NA	3480	NM_173350	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.000000	0.452736	
mm_20619.1	chr2	131855526	131855726	-	1	NA	NA	NA	4121	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	0.025000	0.462687	
mm_123132.1	chr14	56262141	56262341	-	1	NA	NA	NA	93	NM_013542	14939	Mm.14874	NM_013542	ENSMUSG00000015437	Gzmb	AI553453|CCP-1/C11|CCP1|Ctla-1|Ctla1|GZB	granzyme B	protein-coding	0.020000	0.522388	-33(CATCATAAAAGC,-,0.00)
mm_109394.1	chr12	109748030	109748230	+	1	NA	NA	NA	252	NR_037233	100499517		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	0.030000	0.512438	
mm_33493.1	chr4	130823378	130823578	+	1	NA	NA	NA	30941	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.010000	0.542289	
mm_28463.1	chr3	90695114	90695314	-	1	NA	NA	NA	507	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.010000	0.477612	
mm_165145.1	chr2	18698942	18699142	+	1	NA	NA	NA	20	NM_001001334	381350	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	0.100000	0.671642	
mm_173347.1	chrY	90812998	90813198	+	1	NA	NA	NA	26308	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.000000	0.522388	
mm_116951.1	chr13	56135582	56135782	-	1	NA	NA	NA	-132	NM_001159513	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.115000	0.761194	
mm_151926.1	chr19	5800008	5800208	-	1	NA	NA	NA	2564	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.015000	0.477612	
mm_126063.1	chr15	77017544	77017744	+	1	NA	NA	NA	5083	NM_001164048	17189	Mm.404074	NM_013593	ENSMUSG00000018893	Mb	AI325109	myoglobin	protein-coding	0.025000	0.567164	
mm_45984.1	chr5	90476437	90476637	-	1	NA	NA	NA	-14177	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.010000	0.368159	
mm_117839.1	chr13	98692106	98692306	-	1	NA	NA	NA	2625	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.005000	0.507463	
mm_33157.1	chr4	125607532	125607732	+	1	NA	NA	NA	102883	NR_035409	100124641		NR_035409	ENSMUSG00000076033	Mir692-3	Mir692-2b|Mirn692-2b|mmu-mir-692-3	microRNA 692-3	ncRNA	0.020000	0.522388	
mm_25088.1	chr3	100785640	100785840	+	1	NA	NA	NA	-39719	NM_178594	242122	Mm.137467	NM_178594	ENSMUSG00000051076	Vtcn1	B7h4|B7s1|B7x|BC032925	V-set domain containing T cell activation inhibitor 1	protein-coding	0.015000	0.447761	
mm_124599.1	chr15	3275586	3275786	+	1	NA	NA	NA	4709	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.005000	0.383085	-17(TCTTAAAAAGCA,+,0.00)
mm_166498.1	chr6	3504143	3504343	+	1	NA	NA	NA	5850	NM_001167750	73288	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	0.015000	0.462687	-45(CTCTTTAAATAG,-,0.00),-43(CTTTAAATAGCA,+,0.00),-16(GGCTTTAAAATG,-,0.00)
mm_50714.1	chr6	52177054	52177254	+	1	NA	NA	NA	11480	NR_131182	105242657	Mm.490651	NR_131182	ENSMUSG00000056445	Hoxaas2	2810043O09Rik|5730446D14Rik	Hoxa cluster antisense RNA 2	ncRNA	0.050000	0.512438	
mm_157735.1	chrX	71492730	71492930	-	1	NA	NA	NA	19	NM_138309	171486	Mm.283879	NM_138309	ENSMUSG00000035776	Cd99l2	AW548191|Mic2l1|Xap89	CD99 antigen-like 2	protein-coding	0.055000	0.661692	
mm_158618.1	chrX	152657379	152657579	-	1	NA	NA	NA	-12931	NM_001290685	110380	Mm.40796	NM_172441	ENSMUSG00000045180	Shroom2	4832440C16|Apxl|C630003H05Rik|Shrm2	shroom family member 2	protein-coding	0.005000	0.477612	
mm_85203.1	chr9	96752746	96752946	-	1	NA	NA	NA	-15	NR_015511	319859	Mm.259909	NM_177020		E030011O05Rik	-	RIKEN cDNA E030011O05 gene	ncRNA	0.030000	0.616915	
mm_39797.1	chr5	30621948	30622148	+	1	NA	NA	NA	-25888	NR_049199	100885838		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.070000	0.616915	
mm_121023.1	chr14	79587662	79587862	+	1	NA	NA	NA	71	NM_026474	67955	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0.070000	0.601990	
mm_98481.1	chr11	94950763	94950963	+	1	NA	NA	NA	14639	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.030000	0.532338	
mm_11046.1	chr2	27165426	27165626	+	1	NA	NA	NA	19	NM_138942	13166	Mm.167781	NM_138942	ENSMUSG00000000889	Dbh	-	dopamine beta hydroxylase	protein-coding	0.015000	0.597015	
mm_105432.1	chr11	103953925	103954125	-	1	NA	NA	NA	31	NM_008740	18195	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	0.185000	0.815920	
mm_47627.1	chr5	125289615	125289815	-	1	NA	NA	NA	51379	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.050000	0.567164	
mm_1903.1	chr1	85831842	85832042	+	1	NA	NA	NA	38495	NM_133781	12283	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0.005000	0.373134	
mm_30941.1	chr4	33031657	33031857	+	1	NA	NA	NA	332	NM_019586	56228	Mm.259095	NM_019586	ENSMUSG00000028277	Ube2j1	0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p	ubiquitin-conjugating enzyme E2J 1	protein-coding	0.160000	0.776119	
mm_132689.1	chr16	43235766	43235966	+	1	NA	NA	NA	-11418	NM_181058	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.030000	0.432836	
mm_20082.1	chr2	120609442	120609642	-	1	NA	NA	NA	-34	NM_001159609	66606	Mm.428639	NM_025657	ENSMUSG00000027286	Lrrc57	2810002D13Rik|AA407405	leucine rich repeat containing 57	protein-coding	0.070000	0.616915	
mm_35387.1	chr4	33248638	33248838	-	1	NA	NA	NA	49	NM_001033225	108767	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.055000	0.616915	
mm_65964.1	chr7	30435238	30435438	-	1	NA	NA	NA	10244	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.020000	0.621891	
mm_145615.1	chr18	61105547	61105747	+	1	NA	NA	NA	75	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.000000	0.502488	
mm_110699.1	chr12	69198320	69198520	-	1	NA	NA	NA	9	NM_027269	109065	Mm.107180	NM_027269	ENSMUSG00000020973	Dnaaf2	Ktu|TU54|kintoun|mknt	dynein, axonemal assembly factor 2	protein-coding	0.035000	0.522388	
mm_139033.1	chr17	46163068	46163268	+	1	NA	NA	NA	2136	NM_001145979	56055	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.020000	0.507463	
mm_132751.1	chr16	44160216	44160416	+	1	NA	NA	NA	-13081	NM_001029889	207806	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.005000	0.368159	
mm_102971.1	chr11	69667278	69667478	-	1	NA	NA	NA	-1208	NR_110993	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.010000	0.472637	
mm_128984.1	chr15	74833716	74833916	-	1	NA	NA	NA	7827	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.010000	0.358209	34(GTTTATAAAAAG,-,0.00)
mm_150883.1	chr19	45086943	45087143	+	1	NA	NA	NA	10904	NM_178929	107250	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.005000	0.567164	
mm_137580.1	chr17	28007278	28007478	+	1	NA	NA	NA	73206	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.055000	0.567164	79(GCCTTTATGGGA,+,0.00)
mm_51344.1	chr6	72549321	72549521	+	1	NA	NA	NA	148	NM_001042534	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.025000	0.587065	
mm_19056.1	chr2	77280519	77280719	-	1	NA	NA	NA	-27	NM_175465	228071	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.180000	0.855721	
mm_108997.1	chr12	102953989	102954189	+	1	NA	NA	NA	5230	NM_001081017	217843	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	0.000000	0.343284	-6(TTTTTTAAGGAC,+,0.00),13(TGCTTTTAAAAC,-,0.00),14(GCTTTTAAAACA,+,0.00)
mm_53386.1	chr6	129533129	129533329	+	1	NA	NA	NA	37	NM_020590	57436	Mm.14638	NM_020590	ENSMUSG00000030161	Gabarapl1	3110025G09Rik|9130422N19Rik|AI196471|Apg8l|Atg8l|GECI|MNCb-0091	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1	protein-coding	0.075000	0.606965	
mm_160607.1	chr9	78328013	78328213	+	1	NA	NA	NA	83	NM_205822	382088	Mm.360477	NM_205822	ENSMUSG00000038750	Omt2b	AU018149|C86230|Mosg|OM2b	oocyte maturation, beta	protein-coding	0.000000	0.507463	
mm_12997.1	chr2	90885832	90886032	+	1	NA	NA	NA	146	NM_026161	67445	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0.110000	0.746269	
mm_12075.1	chr2	59775977	59776177	+	1	NA	NA	NA	106529	NM_001159636	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.015000	0.542289	
mm_126944.1	chr15	92051140	92051340	+	1	NA	NA	NA	75	NM_001159648	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.060000	0.666667	
mm_71050.1	chr8	33697070	33697270	+	1	NA	NA	NA	-34744	NM_001167921	68153	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	0.035000	0.532338	
mm_72392.1	chr8	81767579	81767779	+	1	NA	NA	NA	425117	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.010000	0.482587	
mm_24970.1	chr3	96729572	96729772	+	1	NA	NA	NA	2061	NM_026406	67845	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.010000	0.373134	
mm_131655.1	chr16	20540492	20540692	+	1	NA	NA	NA	5112	NM_009679	11773	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.005000	0.542289	
mm_140805.1	chr17	22081226	22081426	-	1	NA	NA	NA	84651	NM_177596	210853	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	0.110000	0.696517	
mm_121617.1	chr14	8259252	8259452	-	1	NA	NA	NA	-333	NM_053115	93732	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0.005000	0.497512	
mm_83729.1	chr9	51056352	51056552	-	1	NA	NA	NA	20642	NM_001033534	244864	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0.000000	0.422886	
mm_22642.1	chr3	14864150	14864350	+	1	NA	NA	NA	712	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.000000	0.427861	
mm_136863.1	chr17	12823310	12823510	+	1	NA	NA	NA	44733	NM_008552	17171	Mm.425994	NM_008552	ENSMUSG00000068037	Mas1	Mas-1|Mgra	MAS1 oncogene	protein-coding	0.000000	0.353234	
mm_168013.1	chrY	57896410	57896610	+	1	NA	NA	NA	-362784	NM_001017393	434935	Mm.426195	NM_001017393	ENSMUSG00000096122	Gm21943	-	predicted gene, 21943	protein-coding	0.000000	0.383085	70(CTTTTTATGGTT,+,0.00)
mm_169326.1	chr14	116641127	116641327	-	1	NA	NA	NA	-284070	NM_001079844	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.050000	0.656716	
mm_164578.1	chr17	24736274	24736474	-	1	NA	NA	NA	-219	NM_013759	27361	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	0.035000	0.522388	
mm_107122.1	chr12	19175805	19176005	+	1	NA	NA	NA	661395	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.120000	0.751244	
mm_70485.1	chr8	12396114	12396314	+	1	NA	NA	NA	695	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.045000	0.621891	
mm_127977.1	chr15	12419468	12419668	-	1	NA	NA	NA	98072	NM_025673	66629	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.015000	0.497512	-12(CCTTTTAGATGC,+,0.00)
mm_138884.1	chr17	43389433	43389633	+	1	NA	NA	NA	67	NM_001081178	224792	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	0.030000	0.562189	
mm_123068.1	chr14	55681649	55681849	-	1	NA	NA	NA	68	NM_145705	28113	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0.085000	0.611940	
mm_42489.1	chr5	115471951	115472151	+	1	NA	NA	NA	5785	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.020000	0.542289	
mm_161173.1	chr13	38527871	38528071	-	1	NA	NA	NA	-57	NM_001289599	105245	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	0.110000	0.741294	
mm_60633.1	chr7	44816199	44816399	+	1	NA	NA	NA	-71	NM_001171024	100328588	Mm.2565	NM_001171024	ENSMUSG00000074141	Gm21948	Nup62-il4i1	predicted gene, 21948	protein-coding	0.110000	0.696517	
mm_157127.1	chrX	9446688	9446888	-	1	NA	NA	NA	22536	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.477612	
mm_84004.1	chr9	57606147	57606347	-	1	NA	NA	NA	34	NM_146223	235415	Mm.35242	NM_146223	ENSMUSG00000039714	Cplx3	BC016632|CpxIII|ERGIC-53L|ERGL|Lamn1l|Lman1l	complexin 3	protein-coding	0.065000	0.646766	
mm_47736.1	chr5	130222125	130222325	-	1	NA	NA	NA	-110	NM_027854	71667	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0.120000	0.631841	
mm_139637.1	chr17	57376266	57376466	+	1	NA	NA	NA	17680	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.368159	
mm_41661.1	chr5	98879904	98880104	+	1	NA	NA	NA	25589	NM_001310677	110075	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0.020000	0.368159	
mm_19661.1	chr2	103172249	103172449	-	1	NA	NA	NA	98674	NM_019735	56369	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	0.010000	0.358209	
mm_26728.1	chr3	4891221	4891421	-	1	NA	NA	NA	92613	NR_045272	100503859	Mm.75172	NR_045272	ENSMUSG00000098659	1110015O18Rik	-	RIKEN cDNA 1110015O18 gene	ncRNA	0.000000	0.532338	
mm_120876.1	chr14	75284220	75284420	+	1	NA	NA	NA	-53	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0.100000	0.641791	50(GCTTTTAGATGC,+,0.00)
mm_84714.1	chr9	73113275	73113475	-	1	NA	NA	NA	-94	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0.075000	0.616915	
mm_52878.1	chr6	122491627	122491827	+	1	NA	NA	NA	-5422	NM_027664	108653	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	0.040000	0.562189	
mm_149995.1	chr19	29262143	29262343	+	1	NA	NA	NA	10440	NM_008413	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.000000	0.417910	
mm_26010.1	chr3	135307594	135307794	+	1	NA	NA	NA	-6	NM_178877	97086	Mm.441764	NM_178877	ENSMUSG00000037994	Slc9b2	C80638|NHA2|NHE10|Nhedc2|nha-oc|nhaoc	solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2	protein-coding	0.060000	0.681592	
mm_168489.1	chr1	149513127	149513327	-	1	NA	NA	NA	409212	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.030000	0.477612	
mm_2853.1	chr1	131674827	131675027	+	1	NA	NA	NA	-13768	NM_145509	226421	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0.020000	0.487562	13(CCCTAAAGAGGG,+,0.00)
mm_68573.1	chr7	115824626	115824826	-	1	NA	NA	NA	-16	NM_001277327	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.020000	0.482587	
mm_35021.1	chr4	3903228	3903428	-	1	NA	NA	NA	-31223	NM_020021	17451	Mm.459300	NM_020021	ENSMUSG00000078365	Mos	c-mos	Moloney sarcoma oncogene	protein-coding	0.000000	0.273632	
mm_8511.1	chr1	154726359	154726559	-	1	NA	NA	NA	-539	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.020000	0.467662	
mm_98563.1	chr11	95352639	95352839	+	1	NA	NA	NA	15721	NM_172543	215512	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0.010000	0.358209	
mm_29434.1	chr3	109361890	109362090	-	1	NA	NA	NA	21307	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.020000	0.497512	51(CATTTTAAAAGC,-,0.00)
mm_45633.1	chr5	76331056	76331256	-	1	NA	NA	NA	0	NM_001310637	79455	Mm.143764	NM_023508	ENSMUSG00000029235	Pdcl2	1700010B22Rik|1700016K07Rik|Mgcphlp|Tphlp	phosducin-like 2	protein-coding	0.025000	0.567164	
mm_20415.1	chr2	129300532	129300732	-	1	NA	NA	NA	3262	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.010000	0.457711	
mm_17639.1	chr2	31152159	31152359	-	1	NA	NA	NA	32	NR_040334	320973	Mm.384284	NR_040334		D330023K18Rik	-	RIKEN cDNA D330023K18 gene	ncRNA	0.070000	0.611940	
mm_163399.1	chr12	71111359	71111559	+	1	NA	NA	NA	31	NM_029227	75266	Mm.402075	NM_029227	ENSMUSG00000021078	Tomm20l	4930553D19Rik	translocase of outer mitochondrial membrane 20 homolog (yeast)-like	protein-coding	0.105000	0.686567	
mm_54410.1	chr6	32543725	32543925	-	1	NA	NA	NA	32684	NR_040277	319849	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.005000	0.388060	
mm_85451.1	chr9	104337617	104337817	-	1	NA	NA	NA	5	NM_019807	56318	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	0.030000	0.562189	
mm_6049.1	chr1	60043034	60043234	-	1	NA	NA	NA	-12	NM_001316695	70375	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15	islet cell autoantigen 1-like	protein-coding	0.195000	0.825871	
mm_31796.1	chr4	63979813	63980013	+	1	NA	NA	NA	67102	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding	0.005000	0.502488	
mm_112947.1	chr13	21003360	21003560	+	1	NA	NA	NA	69839	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.005000	0.368159	-42(ACCTTTATAAAG,-,0.00),-40(CTTTATAAAGAT,+,0.00)
mm_26770.1	chr3	8936272	8936472	-	1	NA	NA	NA	-12515	NM_025434	66230	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.010000	0.353234	45(CCTTTAATACCG,+,0.00)
mm_135119.1	chr16	35841362	35841562	-	1	NA	NA	NA	29920	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.010000	0.417910	
mm_105244.1	chr11	102349197	102349397	-	1	NA	NA	NA	15984	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.000000	0.388060	
mm_64648.1	chr7	4063033	4063233	-	1	NA	NA	NA	71	NM_001302677	52855	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.000000	0.547264	
mm_119335.1	chr14	40081699	40081899	+	1	NA	NA	NA	426136	NR_045936	73591	Mm.65499	NR_045936	ENSMUSG00000101261	1700109I08Rik	-	RIKEN cDNA 1700109I08 gene	ncRNA	0.005000	0.527363	
mm_106087.1	chr11	116186797	116186997	-	1	NA	NA	NA	-11958	NM_027107	69535	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	0.010000	0.358209	
mm_81341.1	chr9	108534119	108534319	+	1	NA	NA	NA	17132	NM_175143	69232	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik	glutamine-rich 1	protein-coding	0.020000	0.542289	
mm_7026.1	chr1	87098706	87098906	-	1	NA	NA	NA	2800	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.090000	0.681592	
mm_162190.1	chrX	107676344	107676544	+	1	NA	NA	NA	-68	NM_145224	245572	Mm.137011	NM_145224	ENSMUSG00000031241	Tbx22	D230020M15Rik	T-box 22	protein-coding	0.010000	0.477612	37(CTCCCTAAAAGG,-,0.00),39(CCCTAAAAGGCG,+,0.00)
mm_71162.1	chr8	40511678	40511878	+	1	NA	NA	NA	-5	NM_033560	52348	Mm.489696	NM_033560	ENSMUSG00000031600	Vps37a	2210018P21Rik|4930592A21Rik|AW261445|D8Ertd531e	vacuolar protein sorting 37A	protein-coding	0.140000	0.771144	
mm_121453.1	chr14	120478377	120478577	+	1	NA	NA	NA	16	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.160000	0.776119	
mm_4473.1	chr1	173419291	173419491	+	1	NA	NA	NA	-1213	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.005000	0.412935	
mm_137605.1	chr17	28222116	28222316	+	1	NA	NA	NA	-10538	NM_011145	19015	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.015000	0.527363	
mm_5818.1	chr1	52726747	52726947	-	1	NA	NA	NA	471	NM_178081	98682	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	0.120000	0.751244	
mm_2458.1	chr1	104768710	104768910	+	1	NA	NA	NA	-9	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding	0.065000	0.626866	
mm_30120.1	chr3	141211727	141211927	-	1	NA	NA	NA	528	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding	0.070000	0.572139	
mm_115008.1	chr13	98316979	98317179	+	1	NA	NA	NA	-37	NR_137279	105246056		NR_137279	ENSMUSG00000048603	LOC105246056	-	uncharacterized LOC105246056	ncRNA	0.140000	0.691542	
mm_167174.1	chr7	139799914	139800114	+	1	NA	NA	NA	20996	NR_105827	102465215		NR_105827	ENSMUSG00000098619	Mir6401	Gm27442|mmu-mir-6401	microRNA 6401	ncRNA	0.015000	0.477612	
mm_8234.1	chr1	138175629	138175829	-	1	NA	NA	NA	-424	NM_001268286	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.020000	0.452736	-92(GGCTCTTTAAAG,-,0.00),-91(GCTCTTTAAAGC,-,0.00),-90(CTCTTTAAAGCC,+,0.00)
mm_140175.1	chr17	80762751	80762951	+	1	NA	NA	NA	-34826	NM_001290345	225028	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.005000	0.373134	14(GTCCATAAAAGG,-,0.00)
mm_137765.1	chr17	29490546	29490746	+	1	NA	NA	NA	-399	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.155000	0.850746	
mm_26118.1	chr3	137864414	137864614	+	1	NA	NA	NA	27	NM_016750	51788	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0.125000	0.671642	41(CAGTATAAAGGG,-,0.00)
mm_37740.1	chr4	129578448	129578648	-	1	NA	NA	NA	32	NM_182783	230766	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	0.015000	0.512438	
mm_125106.1	chr15	27796119	27796319	+	1	NA	NA	NA	-114677	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.030000	0.482587	
mm_165281.1	chr2	82991567	82991767	+	1	NA	NA	NA	-652911	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.010000	0.363184	
mm_63402.1	chr7	127297324	127297524	+	1	NA	NA	NA	1164	NM_001253874	16408	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.005000	0.582090	
mm_44830.1	chr5	33976340	33976540	-	1	NA	NA	NA	-6993	NM_001033458	381633	Mm.4923	NM_001033458	ENSMUSG00000070858	Gm1673	-	predicted gene 1673	protein-coding	0.005000	0.348259	
mm_24069.1	chr3	87919421	87919621	+	1	NA	NA	NA	-23	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.060000	0.487562	
mm_39404.1	chr5	14514872	14515072	+	1	NA	NA	NA	54	NM_001110796	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.135000	0.766169	
mm_41883.1	chr5	105415610	105415810	+	1	NA	NA	NA	-65	NM_001033550	433926	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0.205000	0.800995	
mm_56731.1	chr6	115676533	115676733	-	1	NA	NA	NA	2	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.130000	0.706468	
mm_85165.1	chr9	96391876	96392076	-	1	NA	NA	NA	-27677	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.005000	0.412935	48(GCTTTTATGGTT,+,0.00)
mm_25400.1	chr3	107241817	107242017	+	1	NA	NA	NA	-2210	NM_001044382	246691	Mm.490697	NM_001044382	ENSMUSG00000070368	Prok1	EG-VEGF	prokineticin 1	protein-coding	0.020000	0.517413	
mm_70643.1	chr8	14095782	14095982	+	1	NA	NA	NA	7	NM_172910	244310	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	discs, large (Drosophila) homolog-associated protein 2	protein-coding	0.160000	0.791045	
mm_24769.1	chr3	95526687	95526887	+	1	NA	NA	NA	1	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.015000	0.472637	-32(GTCTTTAAATGA,-,0.00),38(CTTTTTAGAGTC,+,0.00)
mm_149216.1	chr19	9985005	9985205	+	1	NA	NA	NA	2459	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.010000	0.348259	
mm_115046.1	chr13	100107910	100108110	+	1	NA	NA	NA	-9	NM_011353	20365	Mm.286177	NM_011353	ENSMUSG00000021643	Serf1	4F5|Msmac1|m4F5	small EDRK-rich factor 1	protein-coding	0.145000	0.721393	
mm_59781.1	chr7	28864353	28864553	+	1	NA	NA	NA	67	NM_008496	16858	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	0.020000	0.577114	
mm_19925.1	chr2	116062438	116062638	-	1	NA	NA	NA	2081	NM_001346044	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.025000	0.507463	
mm_52930.1	chr6	122932097	122932297	+	1	NA	NA	NA	10349	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.010000	0.457711	
mm_95255.1	chr11	44643026	44643226	+	1	NA	NA	NA	25026	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.010000	0.502488	
mm_6095.1	chr1	63273004	63273204	-	1	NA	NA	NA	-165	NM_028673	73884	Mm.86986	NM_028673	ENSMUSG00000027520	Zdbf2	4930431J08Rik|9330107J05Rik	zinc finger, DBF-type containing 2	protein-coding	0.105000	0.731343	-12(CGCTCTTAAAGC,-,0.00),-11(GCTCTTAAAGCG,+,0.00)
mm_26429.1	chr3	142618352	142618552	+	1	NA	NA	NA	-2211	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.005000	0.343284	
mm_95268.1	chr11	45006027	45006227	+	1	NA	NA	NA	110801	NR_045100	100504255	Mm.123608	NR_045100	ENSMUSG00000084773	Gm12159	OTTMUSG00000005475	predicted gene 12159	ncRNA	0.005000	0.373134	
mm_165513.1	chr2	173073180	173073380	+	1	NA	NA	NA	46245	NM_001081387	664799	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris|OTTMUSG00000016680	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.015000	0.542289	
mm_104818.1	chr11	98993614	98993814	-	1	NA	NA	NA	-10698	NM_178596	353155	Mm.453253	NM_178596	ENSMUSG00000047197	Gjd3	Gja11|Gjc1|cx30.2	gap junction protein, delta 3	protein-coding	0.015000	0.417910	
mm_28016.1	chr3	83044180	83044380	-	1	NA	NA	NA	5583	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.015000	0.452736	
mm_88373.1	chr10	76147409	76147609	+	1	NA	NA	NA	58	NM_133184	64452	Mm.154797	NM_133184	ENSMUSG00000020229	Slc5a4a	SGLT3-a	solute carrier family 5, member 4a	protein-coding	0.015000	0.502488	
mm_144371.1	chr18	20510196	20510396	+	1	NA	NA	NA	22	NM_030596	13512	Mm.106811	NM_030596	ENSMUSG00000056632	Dsg3	bal	desmoglein 3	protein-coding	0.000000	0.547264	
mm_143240.1	chr17	63500511	63500711	-	1	NA	NA	NA	-31	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.075000	0.656716	
mm_108404.1	chr12	81631170	81631370	+	1	NA	NA	NA	21	NM_001033149	69480	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	0.130000	0.731343	85(CGCTTTTAAAGC,-,0.00),86(GCTTTTAAAGCC,+,0.00),87(CTTTTAAAGCCC,+,0.00)
mm_92529.1	chr10	79533644	79533844	-	1	NA	NA	NA	43	NM_001302442	50784	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	0.085000	0.711443	
mm_151980.1	chr19	5829676	5829876	-	1	NA	NA	NA	15702	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.025000	0.383085	-72(TTTTTAAAAGCC,+,0.00)
mm_4287.1	chr1	171695798	171695998	+	1	NA	NA	NA	13843	NM_007649	12506	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	0.020000	0.412935	
mm_68331.1	chr7	106504053	106504253	-	1	NA	NA	NA	-63080	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.338308	-16(ACCTCTATAAGA,-,0.00)
mm_83622.1	chr9	48835847	48836047	-	1	NA	NA	NA	-2	NM_001033324	235320	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0.090000	0.686567	
mm_110287.1	chr12	32123597	32123797	-	1	NA	NA	NA	-62418	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.020000	0.487562	
mm_129520.1	chr15	79141133	79141333	-	1	NA	NA	NA	18	NM_001310581	27660	Mm.390827	NM_138581	ENSMUSG00000033029	1700088E04Rik	ESTJ0827E04	RIKEN cDNA 1700088E04 gene	protein-coding	0.100000	0.621891	
mm_73790.1	chr8	117256701	117256901	+	1	NA	NA	NA	-218	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.200000	0.810945	
mm_69444.1	chr7	132989652	132989852	-	1	NA	NA	NA	25495	NM_001170744	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.005000	0.378109	
mm_130703.1	chr15	100687816	100688016	-	1	NA	NA	NA	4	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.015000	0.562189	-34(GCGTATAAAGAG,-,0.00)
mm_153794.1	chr19	45998400	45998600	-	1	NA	NA	NA	-12	NM_198296	71617	Mm.210949	NM_198296	ENSMUSG00000039901	9130011E15Rik	AI431055|AW050122	RIKEN cDNA 9130011E15 gene	protein-coding	0.120000	0.696517	
mm_125581.1	chr15	59494613	59494813	+	1	NA	NA	NA	120515	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.000000	0.223881	
mm_75711.1	chr8	68905040	68905240	-	1	NA	NA	NA	24585	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.363184	
mm_35135.1	chr4	11386433	11386633	-	1	NA	NA	NA	245	NM_001347052	207920	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	0.055000	0.641791	
mm_32511.1	chr4	108579358	108579558	+	1	NA	NA	NA	4	NM_011015	18392	Mm.294154	NM_011015	ENSMUSG00000028587	Orc1	AA545195|MmORC1|Orc1l	origin recognition complex, subunit 1	protein-coding	0.075000	0.606965	
mm_170497.1	chr19	23620117	23620317	+	1	NA	NA	NA	32595	NM_026188	67483	Mm.443287	NM_026188	ENSMUSG00000033053	1700028P14Rik	AV209940	RIKEN cDNA 1700028P14 gene	protein-coding	0.015000	0.442786	
mm_167580.1	chr9	45868793	45868993	+	1	NA	NA	NA	30348	NM_011792	23821	Mm.24044	NM_011792	ENSMUSG00000032086	Bace1	ASP2|Bace|C76936	beta-site APP cleaving enzyme 1	protein-coding	0.010000	0.378109	
mm_70276.1	chr8	3598504	3598704	+	1	NA	NA	NA	11154	NM_001347111	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.000000	0.567164	
mm_65199.1	chr7	19696782	19696982	-	1	NA	NA	NA	1516	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.095000	0.641791	
mm_67899.1	chr7	99626763	99626963	-	1	NA	NA	NA	240	NM_001195529	100503386	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	0.095000	0.706468	
mm_63789.1	chr7	132610541	132610741	+	1	NA	NA	NA	-2	NM_029609	76429	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.115000	0.646766	
mm_112118.1	chr12	112829289	112829489	-	1	NA	NA	NA	0	NM_028023	71963	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	0.135000	0.701493	
mm_75730.1	chr8	69387032	69387232	-	1	NA	NA	NA	8412	NR_038044	378466	Mm.37846	NM_194351	ENSMUSG00000110444	Gm10033	9330175B10Rik|ENSMUSG00000057924|Gm10311	predicted gene 10033	ncRNA	0.005000	0.373134	
mm_119329.1	chr14	38898202	38898402	+	1	NA	NA	NA	0	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA	0.000000	0.437811	-82(GCTTATATAATC,+,0.00)
mm_155356.1	chrX	69390330	69390530	+	1	NA	NA	NA	30099	NM_008032	14266	Mm.466576	NM_008032	ENSMUSG00000031189	Aff2	FMR2P|Fmr2|Ox19|Oxh	AF4/FMR2 family, member 2	protein-coding	0.010000	0.303483	
mm_154791.1	chrX	13071962	13072162	+	1	NA	NA	NA	564	NM_009481	22284	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	0.100000	0.731343	
mm_75822.1	chr8	70485629	70485829	-	1	NA	NA	NA	1629	NM_182991	67937	Mm.23002	NM_182991	ENSMUSG00000035964	Tmem59l	5330410G16Rik	transmembrane protein 59-like	protein-coding	0.035000	0.567164	
mm_172896.1	chr9	56223751	56223951	-	1	NA	NA	NA	-62781	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.115000	0.676617	
mm_164729.1	chr17	62780001	62780201	-	1	NA	NA	NA	101216	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.015000	0.462687	
mm_107544.1	chr12	40695403	40695603	+	1	NA	NA	NA	249450	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.005000	0.407960	
mm_167936.1	chrX	111167643	111167843	+	1	NA	NA	NA	57325	NM_026134	67407	Mm.426142	NM_026134	ENSMUSG00000073001	Cylc1	4930401M13Rik	cylicin, basic protein of sperm head cytoskeleton 1	protein-coding	0.005000	0.363184	
mm_108036.1	chr12	73779436	73779636	+	1	NA	NA	NA	-121788	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.020000	0.512438	-34(GTCCAGAAAAGG,-,0.00)
mm_14525.1	chr2	132691916	132692116	+	1	NA	NA	NA	1733	NM_028637	73747	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0.010000	0.537313	
mm_73059.1	chr8	94386071	94386271	+	1	NA	NA	NA	-329	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.070000	0.661692	
mm_52033.1	chr6	96113350	96113550	+	1	NA	NA	NA	296	NM_182808	320265	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.015000	0.358209	67(GATTTTAAAAAG,-,0.00)
mm_72516.1	chr8	83955561	83955761	+	1	NA	NA	NA	-33	NM_024184	66929	Mm.29680	NM_024184	ENSMUSG00000005470	Asf1b	1700003K02Rik|AA409591	anti-silencing function 1B histone chaperone	protein-coding	0.100000	0.641791	
mm_30633.1	chr4	8806149	8806349	+	1	NA	NA	NA	115843	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.020000	0.532338	
mm_117360.1	chr13	70637643	70637843	-	1	NA	NA	NA	-109	NM_144837	218333	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0.105000	0.761194	
mm_51765.1	chr6	87913893	87914093	+	1	NA	NA	NA	17	NM_173737	232210	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	0.145000	0.746269	
mm_165448.1	chr2	156369137	156369337	+	1	NA	NA	NA	23742	NR_024329	347740	Mm.324242	NR_024329		2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	0.025000	0.567164	-61(TGCTTTAAGAGC,-,0.00),-60(GCTTTAAGAGCT,+,0.00)
mm_1440.1	chr1	67220402	67220602	+	1	NA	NA	NA	97475	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.020000	0.412935	
mm_159394.1	chr3	94362298	94362498	+	1	NA	NA	NA	-46	NM_001136117	271944	Mm.271006	NM_001136117	ENSMUSG00000091648	C2cd4d	Gm659	C2 calcium-dependent domain containing 4D	protein-coding	0.020000	0.557214	
mm_131956.1	chr16	24486837	24487037	+	1	NA	NA	NA	38846	NM_001145952	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.000000	0.398010	-75(ACTTATATACAC,+,0.00)
mm_134770.1	chr16	23520755	23520955	-	1	NA	NA	NA	-265	NM_008555	17174	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0.005000	0.512438	
mm_111228.1	chr12	84756970	84757170	-	1	NA	NA	NA	16042	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.015000	0.477612	
mm_29907.1	chr3	131474324	131474524	-	1	NA	NA	NA	-90344	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.005000	0.487562	65(CCTTTTAAGATG,+,0.00)
mm_129577.1	chr15	79738912	79739112	-	1	NA	NA	NA	3524	NM_194342	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.025000	0.592040	
mm_112499.1	chr13	8202802	8203002	+	1	NA	NA	NA	36	NM_052977	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding	0.045000	0.527363	
mm_146488.1	chr18	90512775	90512975	+	1	NA	NA	NA	2721	NM_198295	67988	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.000000	0.363184	
mm_47010.1	chr5	115474556	115474756	-	1	NA	NA	NA	8390	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.040000	0.532338	
mm_12829.1	chr2	80631651	80631851	+	1	NA	NA	NA	-2961	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.010000	0.333333	
mm_150614.1	chr19	40940122	40940322	+	1	NA	NA	NA	45517	NM_028319	72672	Mm.313523	NM_028319	ENSMUSG00000049164	Zfp518a	2810401C22Rik|6330417C12Rik|AI426493|Zfp518|Znf518|Znf518a|mKIAA0335	zinc finger protein 518A	protein-coding	0.010000	0.417910	
mm_39319.1	chr5	8068332	8068532	+	1	NA	NA	NA	11890	NM_001080974	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.010000	0.462687	-43(GCTCTTATGGAG,+,0.00)
mm_16214.1	chr2	173073126	173073326	+	1	NA	NA	NA	46299	NM_001081387	664799	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris|OTTMUSG00000016680	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.015000	0.497512	
mm_30008.1	chr3	135650663	135650863	-	1	NA	NA	NA	40784	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.005000	0.407960	
mm_118529.1	chr14	15148693	15148893	+	1	NA	NA	NA	290194	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding	0.005000	0.402985	
mm_75897.1	chr8	71085628	71085828	-	1	NA	NA	NA	-54641	NM_001324526	665858	Mm.411658	NM_001324526		Gm7827	EG665858	predicted gene 7827	protein-coding	0.005000	0.512438	
mm_114788.1	chr13	89540408	89540608	+	1	NA	NA	NA	-128	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.005000	0.567164	
mm_74095.1	chr8	122574537	122574737	+	1	NA	NA	NA	2270	NM_009698	11821	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	0.010000	0.537313	
mm_50670.1	chr6	51544379	51544579	+	1	NA	NA	NA	-44	NM_028035	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.015000	0.452736	
mm_43272.1	chr5	130448723	130448923	+	1	NA	NA	NA	31	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.025000	0.631841	
mm_28404.1	chr3	90242967	90243167	-	1	NA	NA	NA	76	NM_001307934	78284	Mm.299952	NM_030080	ENSMUSG00000027938	Creb3l4	1700012K17Rik|5330432F22Rik|AIBZIP|AV040530|AV258827|CREB4|JAL|TISP40|acre1	cAMP responsive element binding protein 3-like 4	protein-coding	0.025000	0.507463	
mm_85600.1	chr9	107550736	107550936	-	1	NA	NA	NA	-719	NM_001243748	56289	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0.030000	0.601990	
mm_118551.1	chr14	17660811	17661011	+	1	NA	NA	NA	-49	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.125000	0.736318	
mm_44894.1	chr5	35102412	35102612	-	1	NA	NA	NA	3185	NM_013587	16976	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.020000	0.512438	
mm_36282.1	chr4	63860835	63861035	-	1	NA	NA	NA	349	NM_009403	21949	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.030000	0.592040	
mm_115310.1	chr13	112318327	112318527	+	1	NA	NA	NA	29909	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.030000	0.477612	
mm_68479.1	chr7	110863150	110863350	-	1	NA	NA	NA	-297	NM_053247	114332	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	0.020000	0.487562	
mm_110177.1	chr12	27336905	27337105	-	1	NA	NA	NA	5713	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.000000	0.427861	29(CAGTATAAAAGT,-,0.00)
mm_72371.1	chr8	81015070	81015270	+	1	NA	NA	NA	-264	NM_027554	74841	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	0.090000	0.636816	
mm_110193.1	chr12	27340202	27340402	-	1	NA	NA	NA	2416	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.005000	0.278607	
mm_122155.1	chr14	31369766	31369966	-	1	NA	NA	NA	33142	NM_009796	12339	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.015000	0.497512	
mm_56081.1	chr6	87287130	87287330	-	1	NA	NA	NA	48545	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.010000	0.502488	64(GCTCATAAAGAG,+,0.00)
mm_42654.1	chr5	119321916	119322116	+	1	NA	NA	NA	-121998	NR_046033	665194	Mm.491047	NR_046033	ENSMUSG00000107334	Gm7538	EG665194	predicted gene 7538	ncRNA	0.015000	0.552239	
mm_129073.1	chr15	75683584	75683784	-	1	NA	NA	NA	-4894	NM_028404	72960	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	0.020000	0.577114	
mm_17950.1	chr2	36808324	36808524	-	1	NA	NA	NA	4666	NM_206903	18328	Mm.377104	NM_206903	ENSMUSG00000075384	Olfr3	MOR136-14|Y71	olfactory receptor 3	protein-coding	0.035000	0.462687	
mm_10405.1	chr2	13578629	13578829	+	1	NA	NA	NA	4418	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.035000	0.532338	
mm_105718.1	chr11	108424890	108425090	-	1	NA	NA	NA	-276	NM_029606	76380	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0.045000	0.537313	
mm_141501.1	chr17	31633028	31633228	-	1	NA	NA	NA	4077	NM_144855	12411	Mm.206417	NM_144855	ENSMUSG00000024039	Cbs	AI047524|AI303044|HIP4	cystathionine beta-synthase	protein-coding	0.020000	0.492537	
mm_116209.1	chr13	32776451	32776651	-	1	NA	NA	NA	5228	NM_001166030	238564	Mm.60041	NM_001166030	ENSMUSG00000044951	Mylk4	EG238564	myosin light chain kinase family, member 4	protein-coding	0.040000	0.492537	45(TCCTTTTAAAGA,-,0.00),46(CCTTTTAAAGAA,+,0.00)
mm_157506.1	chrX	48868418	48868618	-	1	NA	NA	NA	9195	NM_001085499	209005	Mm.336054	NM_001085499	ENSMUSG00000079606	Gm595	-	predicted gene 595	protein-coding	0.010000	0.452736	74(ATTTTTAAAGGG,+,0.00)
mm_102988.1	chr11	69685243	69685443	-	1	NA	NA	NA	211	NM_001159505	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.010000	0.532338	
mm_90367.1	chr10	127167395	127167595	+	1	NA	NA	NA	1664	NM_001244618	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.010000	0.477612	
mm_1281.1	chr1	63595718	63595918	+	1	NA	NA	NA	91109	NM_001081658	241073	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	0.000000	0.263682	
mm_140750.1	chr17	16819834	16820034	-	1	NA	NA	NA	-244169	NM_001005358	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	0.040000	0.477612	
mm_48837.1	chr5	149244658	149244858	-	1	NA	NA	NA	-20246	NM_001308462	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.025000	0.477612	
mm_143981.1	chr17	87473678	87473878	-	1	NA	NA	NA	-26843	NM_007589	12314	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017	calmodulin 2	protein-coding	0.030000	0.631841	-58(GCCCCTATGAGG,-,0.00)
mm_50766.1	chr6	53610371	53610571	+	1	NA	NA	NA	37097	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.005000	0.487562	
mm_152127.1	chr19	7002169	7002369	-	1	NA	NA	NA	6138	NR_027351	107328	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	0.020000	0.601990	
mm_54874.1	chr6	42644822	42645022	-	1	NA	NA	NA	119	NM_146174	232748	Mm.279659	NM_146174	ENSMUSG00000029851	Tcaf2	Fam115c	TRPM8 channel-associated factor 2	protein-coding	0.030000	0.477612	
mm_7993.1	chr1	134304674	134304874	-	1	NA	NA	NA	14770	NM_031189	17928	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	0.025000	0.537313	
mm_4941.1	chr1	191183474	191183674	+	1	NA	NA	NA	-241	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.085000	0.681592	
mm_66543.1	chr7	45189592	45189792	-	1	NA	NA	NA	8697	NM_053256	114640	Mm.207078	NM_053256	ENSMUSG00000038300	Pth2	Tifp39|Tip39	parathyroid hormone 2	protein-coding	0.040000	0.616915	
mm_153747.1	chr19	44984437	44984637	-	1	NA	NA	NA	13	NR_040294	73894	Mm.491408	NR_040294		4930414N06Rik	-	RIKEN cDNA 4930414N06 gene	ncRNA	0.005000	0.482587	
mm_81605.1	chr9	110656419	110656619	+	1	NA	NA	NA	16	NM_028312	72654	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.055000	0.582090	
mm_163410.1	chr12	76910287	76910487	-	1	NA	NA	NA	51861	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.020000	0.592040	
mm_110468.1	chr12	51829439	51829639	-	1	NA	NA	NA	-3	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.160000	0.805970	
mm_100337.1	chr11	118342536	118342736	+	1	NA	NA	NA	-102	NM_021440	58251	Mm.439815	NM_021440	ENSMUSG00000076433	BC100451	Cep295nl|Ddc8|FS39|Kiaa1731nl	cDNA sequence BC100451	protein-coding	0.000000	0.507463	
mm_22691.1	chr3	17793817	17794017	+	1	NA	NA	NA	-1745	NR_029814	723950		NR_029814	ENSMUSG00000093073	Mir124a-2	Mirn124a-2|mir-124-2|mir-124a-2	microRNA 124a-2	ncRNA	0.050000	0.557214	85(CCTTATATCGCG,+,0.00)
mm_45541.1	chr5	72840400	72840600	-	1	NA	NA	NA	27948	NM_001113461	21682	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.015000	0.373134	
mm_26467.1	chr3	144283669	144283869	+	1	NA	NA	NA	-78514	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.010000	0.492537	
mm_25827.1	chr3	128610859	128611059	+	1	NA	NA	NA	-379354	NR_045704	402774	Mm.209170	NR_045704	ENSMUSG00000105816	D030025E07Rik	-	RIKEN cDNA D030025E07 gene	ncRNA	0.015000	0.537313	
mm_44463.1	chr5	22613128	22613328	-	1	NA	NA	NA	62815	NR_102315	320719	Mm.459265	NR_102315	ENSMUSG00000097207	6030443J06Rik	1700030G06Rik	RIKEN cDNA 6030443J06 gene	ncRNA	0.025000	0.452736	
mm_98574.1	chr11	95666897	95667097	+	1	NA	NA	NA	40	NM_008831	18673	Mm.263862	NM_008831	ENSMUSG00000038845	Phb	Bap32	prohibitin	protein-coding	0.065000	0.616915	
mm_154848.1	chrX	20425687	20425887	+	1	NA	NA	NA	99	NM_001289684	382207	Mm.281517	NM_199317	ENSMUSG00000037315	Jade3	5730598B06|AI851988|AW544806|Phf16|mKIAA0215	jade family PHD finger 3	protein-coding	0.095000	0.681592	
mm_158634.1	chrX	154890192	154890392	-	1	NA	NA	NA	-25	NM_001097980	100040937	Mm.359511	NM_001097980	ENSMUSG00000072100	Cldn34b1	EG546400|Gm16390	claudin 34B1	protein-coding	0.010000	0.437811	
mm_162825.1	chr10	81182345	81182545	+	1	NA	NA	NA	-562	NM_001190474	13144	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.020000	0.532338	
mm_13723.1	chr2	117417684	117417884	+	1	NA	NA	NA	-74907	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.020000	0.517413	
mm_134512.1	chr16	19085398	19085598	-	1	NA	NA	NA	201243	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.000000	0.412935	
mm_98294.1	chr11	89092188	89092388	+	1	NA	NA	NA	18447	NM_001033266	217071	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	0.005000	0.368159	
mm_34351.1	chr4	144529418	144529618	+	1	NA	NA	NA	9696	NM_198662	381572	Mm.184290	NM_198662	ENSMUSG00000028593	9430007A20Rik	Aadacl4|Gm1034	RIKEN cDNA 9430007A20 gene	protein-coding	0.005000	0.323383	
mm_78634.1	chr9	40050322	40050522	+	1	NA	NA	NA	-136	NR_033613	72224	Mm.235535	NR_033613	ENSMUSG00000101963	1700001J11Rik	-	ring finger protein 19A pseudogene	pseudo	0.055000	0.562189	
mm_115812.1	chr13	19619724	19619924	-	1	NA	NA	NA	6	NM_134065	105298	Mm.275054	NM_134065	ENSMUSG00000002808	Epdr1	AU040950|AV006210|Epdm2|Epdr2|MERP-1|MERP-2|MERP2|Ucc1	ependymin related protein 1 (zebrafish)	protein-coding	0.050000	0.567164	-63(CCCTTTAAGTGC,+,0.00)
mm_163439.1	chr12	85475693	85475893	+	1	NA	NA	NA	1892	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.020000	0.472637	
mm_11921.1	chr2	52072709	52072909	+	1	NA	NA	NA	-28	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.150000	0.791045	
mm_66320.1	chr7	41499308	41499508	-	1	NA	NA	NA	482	NM_001033530	101835	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	0.040000	0.557214	
mm_107200.1	chr12	25320718	25320918	+	1	NA	NA	NA	191644	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.000000	0.472637	
mm_19940.1	chr2	116067033	116067233	-	1	NA	NA	NA	311	NM_001346047	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.085000	0.616915	
mm_82907.1	chr9	32928242	32928442	-	1	NA	NA	NA	624	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.005000	0.432836	
mm_35349.1	chr4	32251764	32251964	-	1	NA	NA	NA	-165571	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.000000	0.412935	
mm_107603.1	chr12	49384170	49384370	+	1	NA	NA	NA	1263	NM_008241	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.030000	0.567164	
mm_17798.1	chr2	33260816	33261016	-	1	NA	NA	NA	44955	NM_011923	26360	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0.025000	0.532338	
mm_120234.1	chr14	62887127	62887327	+	1	NA	NA	NA	21685	NR_105860	102465311		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.015000	0.388060	
mm_54095.1	chr6	16836949	16837149	-	1	NA	NA	NA	61392	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.005000	0.333333	
mm_150708.1	chr19	42531210	42531410	+	1	NA	NA	NA	12505	NM_177464	52013	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	0.000000	0.378109	
mm_147825.1	chr18	61930139	61930339	-	1	NA	NA	NA	-18387	NM_001164491	319713	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	0.015000	0.512438	
mm_109335.1	chr12	109581624	109581824	+	1	NA	NA	NA	1491	NR_030573	100124466		NR_030573	ENSMUSG00000077025	Mir493	Mirn493|mmu-mir-493	microRNA 493	ncRNA	0.010000	0.417910	-46(CCTTTTATGTCC,+,0.00)
mm_31932.1	chr4	86053903	86054103	+	1	NA	NA	NA	88	NM_029967	77739	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	0.050000	0.597015	
mm_11910.1	chr2	52037913	52038113	+	1	NA	NA	NA	-100	NM_009398	21930	Mm.3509	NM_009398	ENSMUSG00000053475	Tnfaip6	TSG-6|Tnfip6|Tsg6	tumor necrosis factor alpha induced protein 6	protein-coding	0.035000	0.462687	
mm_120367.1	chr14	64580665	64580865	+	1	NA	NA	NA	-7350	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA	0.010000	0.477612	
mm_89683.1	chr10	97517586	97517786	+	1	NA	NA	NA	35355	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.010000	0.368159	
mm_170887.1	chr2	22410654	22410854	-	1	NA	NA	NA	183251	NM_148413	667663	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding	0.055000	0.487562	
mm_101359.1	chr11	23740817	23741017	-	1	NA	NA	NA	30053	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.010000	0.353234	
mm_57256.1	chr6	123283543	123283743	-	1	NA	NA	NA	6228	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.447761	
mm_145634.1	chr18	61111933	61112133	+	1	NA	NA	NA	-5435	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.045000	0.562189	
mm_153012.1	chr19	30574052	30574252	-	1	NA	NA	NA	-24656	NM_010051	13380	Mm.214717	NM_010051	ENSMUSG00000024868	Dkk1	mdkk-1	dickkopf WNT signaling pathway inhibitor 1	protein-coding	0.005000	0.492537	
mm_115216.1	chr13	109632460	109632660	+	1	NA	NA	NA	-271249	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.015000	0.547264	
mm_116033.1	chr13	25986116	25986316	-	1	NA	NA	NA	-19900	NR_045062	100503530	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	OTTMUSG00000000620	predicted gene 11351	ncRNA	0.000000	0.383085	
mm_66936.1	chr7	61604549	61604749	-	1	NA	NA	NA	10678	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.020000	0.437811	
mm_54053.1	chr6	13839229	13839429	-	1	NA	NA	NA	613	NM_001330666	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.035000	0.452736	
mm_51051.1	chr6	65631200	65631400	+	1	NA	NA	NA	-40311	NM_172399	68169	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding	0.005000	0.497512	
mm_75762.1	chr8	69958327	69958527	-	1	NA	NA	NA	15956	NM_001113346	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.000000	0.497512	
mm_6018.1	chr1	59084411	59084611	-	1	NA	NA	NA	10389	NM_175200	73463	Mm.252811	NM_175200	ENSMUSG00000072295	Als2cr11	1700052H20Rik|4930408G06Rik	amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 (human)	protein-coding	0.000000	0.427861	
mm_173073.1	chrX	136215293	136215493	-	1	NA	NA	NA	120	NM_009052	19716	Mm.422943	NM_009052	ENSMUSG00000050071	Bex1	AA407839|AU018692|Bex4|Rex3	brain expressed X-linked 1	protein-coding	0.110000	0.731343	
mm_86190.1	chr9	119510707	119510907	-	1	NA	NA	NA	51871	NM_001253860	20271	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding	0.000000	0.333333	
mm_43550.1	chr5	137570870	137571070	+	1	NA	NA	NA	165	NM_001289507	50765	Mm.21757	NM_015799	ENSMUSG00000029716	Tfr2	Trfr2	transferrin receptor 2	protein-coding	0.035000	0.567164	
mm_117859.1	chr13	98815284	98815484	-	1	NA	NA	NA	65	NM_172591	218503	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.130000	0.726368	
mm_5927.1	chr1	55226691	55226891	-	1	NA	NA	NA	-9	NM_028713	74013	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	0.020000	0.517413	
mm_75309.1	chr8	41209710	41209910	-	1	NA	NA	NA	5346	NM_145594	234199	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding	0.020000	0.527363	
mm_123740.1	chr14	70189468	70189668	-	1	NA	NA	NA	2678	NM_001271409	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.005000	0.393035	
mm_77537.1	chr8	123040950	123041150	-	1	NA	NA	NA	1234	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.050000	0.517413	
mm_60062.1	chr7	31208245	31208445	+	1	NA	NA	NA	45987	NR_046062	100038516	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322|ENSMUSG00000074193	predicted gene 10640	ncRNA	0.055000	0.537313	
mm_112913.1	chr13	20922901	20923101	+	1	NA	NA	NA	128888	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.442786	
mm_157993.1	chrX	94540128	94540328	-	1	NA	NA	NA	1846	NM_019791	94275	Mm.27578	NM_019791	ENSMUSG00000025151	Maged1	2810433C11Rik|5430405L04Rik|DXBwg1492e|Dlixin|Dlxin-1|Dlxin1|MAGE-D1|NRAGE|mFLJ00163	melanoma antigen, family D, 1	protein-coding	0.010000	0.492537	70(GGCCTTTAAGGG,-,0.00),71(GCCTTTAAGGGT,+,0.00),72(CCTTTAAGGGTC,+,0.00)
mm_47772.1	chr5	131616366	131616566	-	1	NA	NA	NA	-263803	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.075000	0.592040	
mm_119392.1	chr14	41137643	41137843	+	1	NA	NA	NA	5955	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.005000	0.368159	59(CTTCTTATGGGC,+,0.00)
mm_154398.1	chrM	13530	13730	+	1	NA	NA	NA	NA	NA									0.020000	0.353234	
mm_52214.1	chr6	103510550	103510750	+	1	NA	NA	NA	-226	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.020000	0.507463	
mm_28408.1	chr3	90265442	90265642	-	1	NA	NA	NA	-972	NM_201407	229541	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0.105000	0.781095	
mm_35300.1	chr4	22488228	22488428	-	1	NA	NA	NA	38	NM_008899	18992	Mm.129387	NM_008899	ENSMUSG00000095139	Pou3f2	9430075J19Rik|A230098E07Rik|Brn-2|Brn2|OTF-7|Otf7|oct-7	POU domain, class 3, transcription factor 2	protein-coding	0.080000	0.651741	
mm_4559.1	chr1	177447025	177447225	+	1	NA	NA	NA	1304	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.025000	0.512438	
mm_89095.1	chr10	84488193	84488393	+	1	NA	NA	NA	0	NR_108059	75804		NR_108059	ENSMUSG00000020033	4930463O16Rik	-	RIKEN cDNA 4930463O16 gene	ncRNA	0.005000	0.462687	
mm_150855.1	chr19	45006400	45006600	+	1	NA	NA	NA	-58	NM_053164	94067	Mm.44174	NM_053164	ENSMUSG00000025208	Mrpl43	4930442D21Rik|bMRP36a	mitochondrial ribosomal protein L43	protein-coding	0.115000	0.661692	
mm_167525.1	chr9	21287824	21288024	-	1	NA	NA	NA	45	NM_145416	215194	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	0.125000	0.691542	
mm_64741.1	chr7	4752922	4753122	-	1	NA	NA	NA	72	NR_110411	333182	Mm.29625	NM_183405	ENSMUSG00000051811	Cox6b2	1700067P11Rik|BC048670|COXVIB2	cytochrome c oxidase subunit VIb polypeptide 2	protein-coding	0.030000	0.562189	
mm_124519.1	chr14	121965093	121965293	-	1	NA	NA	NA	0	NM_183031	321019	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.020000	0.412935	27(CACCATAAAAGG,-,0.00),29(CCATAAAAGGAC,+,0.00),52(CACTCTTAAAGC,-,0.00)
mm_46608.1	chr5	107874954	107875154	-	1	NA	NA	NA	53	NM_007964	14020	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0.010000	0.427861	
mm_61797.1	chr7	83970196	83970396	+	1	NA	NA	NA	78296	NM_023403	67943	Mm.117365	NM_023403	ENSMUSG00000038503	Mesdc2	2210015O11Rik|AW537813|mKIAA0081|mesd|msd	mesoderm development candidate 2	protein-coding	0.005000	0.552239	
mm_162693.1	chr10	19933485	19933685	+	1	NA	NA	NA	-941	NM_008580	26408	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.075000	0.542289	
mm_157788.1	chrX	73824858	73825058	-	1	NA	NA	NA	11	NM_001029868	245469	Mm.103782	NM_001029868	ENSMUSG00000002006	Pdzd4	B230341P03|D130075J17Rik|Kiaa1444-hp|LU1|PDZRN4L|Pdzk4|Pdzrnk4l|Xlu	PDZ domain containing 4	protein-coding	0.120000	0.716418	
mm_142454.1	chr17	45593541	45593741	-	1	NA	NA	NA	-1	NM_001199113	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.025000	0.592040	
mm_49655.1	chr6	31123021	31123221	+	1	NA	NA	NA	-60028	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.015000	0.472637	
mm_139587.1	chr17	57223199	57223399	+	1	NA	NA	NA	4837	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.025000	0.562189	
mm_87969.1	chr10	63429999	63430199	+	1	NA	NA	NA	1	NM_177612	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.110000	0.666667	
mm_155217.1	chrX	56792495	56792695	+	1	NA	NA	NA	6068	NM_001287800	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.020000	0.407960	
mm_77588.1	chr8	123859875	123860075	-	1	NA	NA	NA	234	NM_028536	73420	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	0.135000	0.721393	
mm_172767.1	chr8	94178969	94179169	+	1	NA	NA	NA	-20	NM_013602	17748	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.095000	0.631841	
mm_119754.1	chr14	54158932	54159132	+	1	NA	NA	NA	94897	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.467662	-34(TCTTATAAAAGG,-,0.00)
mm_90757.1	chr10	5550482	5550682	-	1	NA	NA	NA	110	NM_153399	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.100000	0.696517	
mm_51659.1	chr6	86195128	86195328	+	1	NA	NA	NA	1	NM_031199	21802	Mm.137222	NM_031199	ENSMUSG00000029999	Tgfa	wa-1|wa1	transforming growth factor alpha	protein-coding	0.085000	0.721393	
mm_127345.1	chr15	100615976	100616176	+	1	NA	NA	NA	414	NM_011873	23994	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0.115000	0.706468	
mm_153753.1	chr19	45150420	45150620	-	1	NA	NA	NA	-195	NM_021901	21908	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	0.030000	0.577114	
mm_83108.1	chr9	40346119	40346319	-	1	NA	NA	NA	12747	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.020000	0.517413	
mm_69293.1	chr7	128220802	128221002	-	1	NA	NA	NA	-14536	NM_009943	12862	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	0.010000	0.447761	-6(GCCTATTTAAAC,-,0.00)
mm_45834.1	chr5	87694685	87694885	-	1	NA	NA	NA	4640	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.512438	
mm_91644.1	chr10	42277507	42277707	-	1	NA	NA	NA	-865	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.050000	0.537313	
mm_167001.1	chr7	47752512	47752712	-	1	NA	NA	NA	-151240	NM_153067	233222	Mm.240142	NM_153067	ENSMUSG00000078698	Mrgpra3	Mrga3	MAS-related GPR, member A3	protein-coding	0.015000	0.467662	-58(TGCTTTAAAAAG,-,0.00)
mm_57467.1	chr6	125230977	125231177	-	1	NA	NA	NA	-199	NR_015604	78668	Mm.10626	NR_015604	ENSMUSG00000030337	E130112N10Rik	5830448L21Rik|9530059J11Rik	RIKEN cDNA E130112N10 gene	ncRNA	0.000000	0.412935	
mm_32473.1	chr4	107802141	107802341	+	1	NA	NA	NA	-18	NR_033496	16975	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0.175000	0.835821	
mm_154358.1	chrM	6144	6344	+	1	NA	NA	NA	NA	NA									0.020000	0.383085	
mm_16659.1	chr2	6638038	6638238	-	1	NA	NA	NA	83524	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.000000	0.388060	
mm_56961.1	chr6	120038000	120038200	-	1	NA	NA	NA	555	NM_001199083	232341	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0.130000	0.751244	
mm_147378.1	chr18	43687565	43687765	-	1	NA	NA	NA	108	NM_001163637	76217	Mm.134602	NM_001163637	ENSMUSG00000024502	Jakmip2	6430702L21Rik|AI850334|D930046L20Rik	janus kinase and microtubule interacting protein 2	protein-coding	0.020000	0.587065	
mm_5849.1	chr1	52971940	52972140	-	1	NA	NA	NA	-19200	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.000000	0.462687	
mm_138555.1	chr17	35266116	35266316	+	1	NA	NA	NA	3093	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.010000	0.527363	
mm_92527.1	chr10	79093271	79093471	-	1	NA	NA	NA	4229	NM_001004362	72128	Mm.297854	NM_001004362	ENSMUSG00000060301	2610008E11Rik	-	RIKEN cDNA 2610008E11 gene	protein-coding	0.015000	0.343284	
mm_105180.1	chr11	101785171	101785371	-	1	NA	NA	NA	39	NM_008815	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.065000	0.631841	
mm_170766.1	chr2	161108904	161109104	-	1	NA	NA	NA	82	NM_173368	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0.040000	0.552239	
mm_38040.1	chr4	133910601	133910801	-	1	NA	NA	NA	-22904	NM_009097	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.085000	0.656716	
mm_159457.1	chr3	153905837	153906037	-	1	NA	NA	NA	201	NM_031870	55993	Mm.272226	NM_031870	ENSMUSG00000005493	Msh4	4930485C04Rik|AV144863|mMsh4	mutS homolog 4	protein-coding	0.080000	0.616915	
mm_116166.1	chr13	30787578	30787778	-	1	NA	NA	NA	38445	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.000000	0.582090	
mm_71040.1	chr8	33660704	33660904	+	1	NA	NA	NA	7566	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.015000	0.442786	57(CCCCTTAAAAAA,-,0.00)
mm_165651.1	chr3	83841449	83841649	-	1	NA	NA	NA	59	NM_011905	24088	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.065000	0.681592	
mm_115125.1	chr13	104287268	104287468	+	1	NA	NA	NA	-467	NR_136938	108154	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.005000	0.388060	
mm_123795.1	chr14	70443325	70443525	-	1	NA	NA	NA	46	NM_025945	67065	Mm.20420	NM_025945	ENSMUSG00000000776	Polr3d	2810426M17Rik|44kDa|AI326118|AW489084|BN51T|RPC4|TSBN51	polymerase (RNA) III (DNA directed) polypeptide D	protein-coding	0.100000	0.651741	
mm_69886.1	chr7	141637027	141637227	-	1	NA	NA	NA	16426	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.020000	0.472637	
mm_142828.1	chr17	51775104	51775304	-	1	NA	NA	NA	36850	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.025000	0.507463	
mm_131210.1	chr16	8682775	8682975	+	1	NA	NA	NA	2105	NM_001324517	436336	Mm.357666	NM_001324517		Gm5767	EG436336	predicted gene 5767	protein-coding	0.015000	0.542289	
mm_163337.1	chr12	13501127	13501327	+	1	NA	NA	NA	126419	NR_136761	102639399	Mm.122052	NR_136761		Gm35725	-	predicted gene, 35725	ncRNA	0.020000	0.492537	
mm_29547.1	chr3	116807591	116807791	-	1	NA	NA	NA	475	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.015000	0.437811	
mm_72920.1	chr8	91074115	91074315	+	1	NA	NA	NA	4158	NM_001282000	19651	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	retinoblastoma-like 2	protein-coding	0.020000	0.412935	-44(CCTTATATGTGG,+,0.00)
mm_39248.1	chr5	3494531	3494731	+	1	NA	NA	NA	-49202	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.000000	0.537313	
mm_33426.1	chr4	130050622	130050822	+	1	NA	NA	NA	2882	NM_028266	107581	Mm.41860	NM_028266	ENSMUSG00000040690	Col16a1	2700007F12Rik|A530052M23Rik|AI838662|CA1F	collagen, type XVI, alpha 1	protein-coding	0.005000	0.562189	
mm_123165.1	chr14	57251933	57252133	-	1	NA	NA	NA	-118422	NM_001010937	14623	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	0.010000	0.552239	
mm_48712.1	chr5	147306944	147307144	-	1	NA	NA	NA	205	NM_007673	12591	Mm.20358	NM_007673	ENSMUSG00000029646	Cdx2	Cdx-2	caudal type homeobox 2	protein-coding	0.055000	0.626866	
mm_57072.1	chr6	122578080	122578280	-	1	NA	NA	NA	24264	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.000000	0.407960	14(GGGCATTAAAAG,-,0.00)
mm_61330.1	chr7	68264751	68264951	+	1	NA	NA	NA	-618	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.045000	0.572139	
mm_16906.1	chr2	13491820	13492020	-	1	NA	NA	NA	-44	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.015000	0.467662	
mm_125976.1	chr15	76295207	76295407	+	1	NA	NA	NA	873	NM_001195537	100503915	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	ENSMUSG00000071724|Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	0.060000	0.577114	
mm_95425.1	chr11	50160152	50160352	+	1	NA	NA	NA	-14599	NM_026543	68067	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	0.015000	0.437811	
mm_127269.1	chr15	99723334	99723534	+	1	NA	NA	NA	-2184	NM_183256	66379	Mm.5265	NM_183256	ENSMUSG00000023020	Cox14	2310016M24Rik|AA959804	cytochrome c oxidase assembly protein 14	protein-coding	0.025000	0.587065	
mm_8160.1	chr1	136949414	136949614	-	1	NA	NA	NA	4116	NM_001159769	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	0.035000	0.631841	
mm_44639.1	chr5	28123612	28123812	-	1	NA	NA	NA	-41984	NM_010134	13799	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	0.030000	0.492537	
mm_54302.1	chr6	29507886	29508086	-	1	NA	NA	NA	-34	NM_001029985	333088	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	0.100000	0.696517	
mm_104256.1	chr11	88924449	88924649	-	1	NA	NA	NA	18621	NR_045955	73921	Mm.439148	NR_045955	ENSMUSG00000087338	Scpep1os	4930405P13Rik	serine carboxypeptidase 1, opposite strand	ncRNA	0.015000	0.507463	
mm_8790.1	chr1	161766628	161766828	-	1	NA	NA	NA	21767	NM_001205243	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.005000	0.393035	
mm_91593.1	chr10	40349906	40350106	-	1	NA	NA	NA	698	NM_001291816	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.100000	0.686567	
mm_167273.1	chr8	33657909	33658109	+	1	NA	NA	NA	4771	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.020000	0.482587	
mm_159489.1	chr4	42612021	42612221	+	1	NA	NA	NA	-2	NM_001270360	100862177	Mm.407493	NM_001270360	ENSMUSG00000094065	Gm21541	-	predicted gene, 21541	protein-coding	0.015000	0.527363	-31(GCATAAATAGGC,+,0.00)
mm_10236.1	chr2	6707456	6707656	+	1	NA	NA	NA	14106	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.005000	0.497512	
mm_133203.1	chr16	73072295	73072495	+	1	NA	NA	NA	409246	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.010000	0.502488	
mm_89669.1	chr10	97506441	97506641	+	1	NA	NA	NA	24210	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.015000	0.427861	
mm_34850.1	chr4	155490960	155491160	+	1	NA	NA	NA	-301	NM_001160017	14688	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.055000	0.626866	
mm_169690.1	chr15	74652684	74652884	-	1	NA	NA	NA	-16466	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.000000	0.452736	
mm_20114.1	chr2	121160064	121160264	-	1	NA	NA	NA	10961	NM_001290819	99334	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	0.005000	0.482587	
mm_100358.1	chr11	118449780	118449980	+	1	NA	NA	NA	5115	NR_045902	100126224	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	OTTMUSG00000003972	predicted gene 11747	ncRNA	0.020000	0.522388	
mm_97431.1	chr11	78094632	78094832	+	1	NA	NA	NA	59	NM_145430	216971	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0.085000	0.681592	
mm_46839.1	chr5	113333223	113333423	-	1	NA	NA	NA	4322	NR_106089	102466821		NR_106089	ENSMUSG00000104840	Mir7230	mmu-mir-7230	microRNA 7230	ncRNA	0.030000	0.497512	
mm_121011.1	chr14	79535484	79535684	+	1	NA	NA	NA	19910	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.040000	0.472637	64(CACTCTTAAAAG,-,0.00)
mm_118403.1	chr13	119408894	119409094	-	1	NA	NA	NA	17	NM_008710	18115	Mm.132584	NM_008710	ENSMUSG00000025453	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.110000	0.706468	
mm_71923.1	chr8	70234108	70234308	+	1	NA	NA	NA	-18	NM_001168290	234373	Mm.284505	NM_172755	ENSMUSG00000036054	Sugp2	Sfrs14|Srsf14|mKIAA0365	SURP and G patch domain containing 2	protein-coding	0.100000	0.656716	-21(CACCATATAAGC,-,0.00),-19(CCATATAAGCGC,+,0.00)
mm_36653.1	chr4	94603146	94603346	-	1	NA	NA	NA	1	NM_172695	18786	Mm.490101	NM_172695	ENSMUSG00000028577	Plaa	2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3	phospholipase A2, activating protein	protein-coding	0.120000	0.681592	
mm_82662.1	chr9	22113195	22113395	-	1	NA	NA	NA	718	NR_106052	102466221		NR_106052	ENSMUSG00000098646	Mir7084	Gm27978|mmu-mir-7084	microRNA 7084	ncRNA	0.010000	0.601990	
mm_39054.1	chr4	153950404	153950604	-	1	NA	NA	NA	-28	NR_040670	407793	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0.010000	0.472637	-9(ACCCTTATAAGA,-,0.00)
mm_109868.1	chr12	4907647	4907847	-	1	NA	NA	NA	-227	NM_145441	217379	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding	0.145000	0.731343	
mm_21315.1	chr2	157098841	157099041	-	1	NA	NA	NA	11886	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.020000	0.557214	44(TCCTTTATAAGA,-,0.00)
mm_65344.1	chr7	24988045	24988245	-	1	NA	NA	NA	-478	NR_106014	102465634		NR_106014	ENSMUSG00000099258	Mir7047	Gm27270|mmu-mir-7047	microRNA 7047	ncRNA	0.030000	0.567164	
mm_111718.1	chr12	103730261	103730461	-	1	NA	NA	NA	7828	NM_009244	20701	Mm.439692	NM_009244	ENSMUSG00000071178	Serpina1b	D12Ucla2|Dom2|PI2|Spi1-2	serine (or cysteine) preptidase inhibitor, clade A, member 1B	protein-coding	0.030000	0.542289	
mm_51458.1	chr6	82041696	82041896	+	1	NA	NA	NA	168	NM_145570	232146	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	0.075000	0.691542	
mm_55577.1	chr6	71396185	71396385	-	1	NA	NA	NA	22858	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.000000	0.437811	
mm_63825.1	chr7	134776546	134776746	+	1	NA	NA	NA	105959	NM_001033420	330662	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik	dedicator of cytokinesis 1	protein-coding	0.005000	0.487562	
mm_23206.1	chr3	41560589	41560789	+	1	NA	NA	NA	-2694	NM_172303	269424	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.010000	0.427861	
mm_117660.1	chr13	93192329	93192529	-	1	NA	NA	NA	-146	NM_133905	100715	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0.085000	0.597015	
mm_93750.1	chr10	120170318	120170518	-	1	NA	NA	NA	31119	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.005000	0.422886	
mm_73417.1	chr8	106059493	106059693	+	1	NA	NA	NA	-10	NM_010901	18021	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.140000	0.800995	
mm_152311.1	chr19	9895853	9896053	-	1	NA	NA	NA	3580	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.020000	0.507463	-34(TCTTAAAGAGGC,+,0.00)
mm_122991.1	chr14	54989221	54989421	-	1	NA	NA	NA	5228	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.040000	0.552239	
mm_83405.1	chr9	44767745	44767945	-	1	NA	NA	NA	-37	NM_145985	213827	Mm.371682	NM_145985	ENSMUSG00000032096	Arcn1	4632432M07Rik|nur17	archain 1	protein-coding	0.080000	0.661692	
mm_61360.1	chr7	68618358	68618558	+	1	NA	NA	NA	2	NR_003648	384639	Mm.261760	NM_001013781		Gm5334	EG384639	tetraspanin 7 pseudogene	pseudo	0.005000	0.487562	
mm_116814.1	chr13	54412278	54412478	-	1	NA	NA	NA	41029	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.025000	0.452736	
mm_90949.1	chr10	13060329	13060529	-	1	NA	NA	NA	-30359	NM_009538	22634	Mm.287857	NM_009538	ENSMUSG00000019817	Plagl1	Lot1|Zac1	pleiomorphic adenoma gene-like 1	protein-coding	0.025000	0.517413	
mm_166012.1	chr4	118449594	118449794	-	1	NA	NA	NA	7819	NM_001285496	17480	Mm.4864	NM_010823	ENSMUSG00000006389	Mpl	CD110|TPO-R|c-mpl|hlb219	myeloproliferative leukemia virus oncogene	protein-coding	0.000000	0.398010	
mm_168945.1	chr12	73062460	73062660	-	1	NA	NA	NA	-15848	NM_009189	20471	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0.005000	0.432836	
mm_171464.1	chr4	145730183	145730383	-	1	NA	NA	NA	-51260	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.070000	0.572139	
mm_15571.1	chr2	158624848	158625048	+	1	NA	NA	NA	35	NM_175419	109275	Mm.27747	NM_175419	ENSMUSG00000037761	Actr5	AA545173|B430109J19Rik	ARP5 actin-related protein 5	protein-coding	0.065000	0.616915	
mm_30328.1	chr3	151731976	151732176	-	1	NA	NA	NA	17883	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.000000	0.308458	-45(TCTTTTAAACTG,+,0.00)
mm_24442.1	chr3	90603669	90603869	+	1	NA	NA	NA	-1	NM_011311	20198	Mm.3925	NM_011311	ENSMUSG00000001020	S100a4	18A2|42a|Capl|FSp1|Mts1|PeL98|metastasin|pk9a	S100 calcium binding protein A4	protein-coding	0.005000	0.512438	-33(GGGTATAAATAG,-,0.00)
mm_117233.1	chr13	64274855	64275055	-	1	NA	NA	NA	33	NM_172587	218294	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	0.105000	0.696517	
mm_117264.1	chr13	64370207	64370407	-	1	NA	NA	NA	213	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.085000	0.656716	87(GGGTTTAAAGGC,-,0.00)
mm_128163.1	chr15	34068115	34068315	-	1	NA	NA	NA	-14504	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.010000	0.462687	
mm_117228.1	chr13	64153171	64153371	-	1	NA	NA	NA	-72	NM_175494	238673	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	0.135000	0.686567	
mm_22220.1	chr2	174345408	174345608	-	1	NA	NA	NA	15419	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.030000	0.557214	
mm_107367.1	chr12	32850494	32850694	+	1	NA	NA	NA	26478	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.035000	0.462687	
mm_123734.1	chr14	70175320	70175520	-	1	NA	NA	NA	1395	NM_001253736	213019	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0.010000	0.601990	
mm_59321.1	chr7	25301400	25301600	+	1	NA	NA	NA	141	NM_001081294	623131	Mm.172160	NM_001081294	ENSMUSG00000058741	Prr19	EG623131	proline rich 19	protein-coding	0.030000	0.626866	
mm_90285.1	chr10	123264017	123264217	+	1	NA	NA	NA	41	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	0.025000	0.577114	
mm_154808.1	chrX	13623462	13623662	+	1	NA	NA	NA	-9207	NM_011823	23890	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	0.005000	0.398010	
mm_14508.1	chr2	132263102	132263302	+	1	NA	NA	NA	54	NM_138651	110911	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.130000	0.781095	
mm_35153.1	chr4	12087862	12088062	-	1	NA	NA	NA	-5	NM_177861	329795	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	0.055000	0.537313	
mm_152086.1	chr19	6906826	6907026	-	1	NA	NA	NA	2719	NM_012021	54683	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.015000	0.621891	
mm_909.1	chr1	54329901	54330101	+	1	NA	NA	NA	79318	NM_030025	78016	Mm.67455	NM_030025	ENSMUSG00000025983	Ccdc150	4930511H11Rik	coiled-coil domain containing 150	protein-coding	0.015000	0.437811	-80(AGCTCTAAGAGG,-,0.00),-79(GCTCTAAGAGGC,+,0.00)
mm_150139.1	chr19	31082792	31082992	+	1	NA	NA	NA	51	NM_031249	83410	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	0.080000	0.542289	
mm_54973.1	chr6	48738825	48739025	-	1	NA	NA	NA	-122	NM_175860	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.010000	0.422886	-64(GCTTAAAGAGAC,+,0.00)
mm_162328.1	chr1	40359066	40359266	+	1	NA	NA	NA	34539	NM_133193	107527	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0.005000	0.522388	
mm_58613.1	chr7	5061658	5061858	+	1	NA	NA	NA	-385	NM_133671	22185	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.090000	0.606965	
mm_12026.1	chr2	58160121	58160321	+	1	NA	NA	NA	-99	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.015000	0.427861	-14(GCCTATAGAGGA,+,0.00)
mm_80100.1	chr9	70314134	70314334	+	1	NA	NA	NA	91519	NR_049200	100885839		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0.005000	0.447761	
mm_68318.1	chr7	106440989	106441189	-	1	NA	NA	NA	-16	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.005000	0.497512	
mm_6953.1	chr1	85959584	85959784	-	1	NA	NA	NA	1371	NM_001033290	227326	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0.010000	0.507463	
mm_71244.1	chr8	40912501	40912701	+	1	NA	NA	NA	-13632	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.025000	0.542289	
mm_132614.1	chr16	38712206	38712406	+	1	NA	NA	NA	729	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.035000	0.557214	
mm_26569.1	chr3	146602205	146602405	+	1	NA	NA	NA	5156	NM_009474	22262	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.010000	0.477612	
mm_55494.1	chr6	69607744	69607944	-	1	NA	NA	NA	-280670	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.348259	
mm_113715.1	chr13	43615678	43615878	+	1	NA	NA	NA	-19	NM_183204	328234	Mm.40588	NM_183204	ENSMUSG00000044164	Rnf182	C630023L15Rik	ring finger protein 182	protein-coding	0.045000	0.656716	
mm_50150.1	chr6	41543916	41544116	+	1	NA	NA	NA	22240	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.030000	0.497512	
mm_68026.1	chr7	100987132	100987332	-	1	NA	NA	NA	-22866	NM_183168	233571	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.005000	0.407960	
mm_46708.1	chr5	110286068	110286268	-	1	NA	NA	NA	0	NM_008993	19301	Mm.21853	NM_008993	ENSMUSG00000029499	Pxmp2	22kDa|PMP22	peroxisomal membrane protein 2	protein-coding	0.120000	0.761194	
mm_45555.1	chr5	73173362	73173562	-	1	NA	NA	NA	83156	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.015000	0.457711	
mm_139727.1	chr17	57476593	57476793	+	1	NA	NA	NA	68621	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.005000	0.373134	
mm_138708.1	chr17	36042927	36043127	+	1	NA	NA	NA	66	NM_001034909	547347	Mm.484641	NM_001034909	ENSMUSG00000073407	Gm6034	EG547347|H2-gs14-2	predicted gene 6034	protein-coding	0.015000	0.542289	
mm_84766.1	chr9	75611120	75611320	-	1	NA	NA	NA	105	NM_016711	50876	Mm.291880	NM_016711	ENSMUSG00000032186	Tmod2	N-Tmod|NTMOD	tropomodulin 2	protein-coding	0.140000	0.741294	
mm_42887.1	chr5	122372516	122372716	+	1	NA	NA	NA	108	NM_024216	68080	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	0.100000	0.681592	
mm_165470.1	chr2	164255656	164255856	+	1	NA	NA	NA	887	NM_173377	329557	Mm.118769	NM_173377	ENSMUSG00000050383	Svs3b	9530004A22Rik	seminal vesicle secretory protein 3B	protein-coding	0.025000	0.532338	
mm_120300.1	chr14	63138976	63139176	+	1	NA	NA	NA	16614	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.005000	0.477612	
mm_24622.1	chr3	93520387	93520587	+	1	NA	NA	NA	-9	NM_016740	20195	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0.070000	0.636816	
mm_1242.1	chr1	62797201	62797401	+	1	NA	NA	NA	-2569	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.010000	0.388060	
mm_107404.1	chr12	33394720	33394920	+	1	NA	NA	NA	-34	NM_029152	75040	Mm.156068	NM_029152	ENSMUSG00000020562	Efcab10	4930504H06Rik	EF-hand calcium binding domain 10	protein-coding	0.015000	0.467662	
mm_103195.1	chr11	70646910	70647110	-	1	NA	NA	NA	29	NM_024211	67863	Mm.296082	NM_024211	ENSMUSG00000014606	Slc25a11	2310022P18Rik|2oxoc	solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	protein-coding	0.105000	0.676617	
mm_66442.1	chr7	44848795	44848995	-	1	NA	NA	NA	184	NM_001042655	233204	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	0.050000	0.547264	
mm_25270.1	chr3	104863884	104864084	+	1	NA	NA	NA	521	NM_009797	12340	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	0.020000	0.457711	-34(ACCTATAAATGG,-,0.00)
mm_112832.1	chr13	20824060	20824260	+	1	NA	NA	NA	30047	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.407960	
mm_14690.1	chr2	140598391	140598591	+	1	NA	NA	NA	72985	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.005000	0.378109	
mm_17789.1	chr2	33086159	33086359	-	1	NA	NA	NA	945	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.020000	0.447761	
mm_108164.1	chr12	76370421	76370621	+	1	NA	NA	NA	255	NM_178744	268564	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.130000	0.751244	
mm_163290.1	chr11	118211950	118212150	-	1	NA	NA	NA	692	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.015000	0.592040	
mm_108225.1	chr12	77237800	77238000	+	1	NA	NA	NA	-204	NM_001252614	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.025000	0.492537	-98(GCATATAAAAGG,-,0.00)
mm_136963.1	chr17	15704879	15705079	+	1	NA	NA	NA	12	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.220000	0.796020	
mm_34756.1	chr4	152338640	152338840	+	1	NA	NA	NA	89	NM_001081376	269610	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding	0.150000	0.815920	
mm_110743.1	chr12	69892686	69892886	-	1	NA	NA	NA	-319	NM_178628	73991	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	0.135000	0.731343	
mm_22750.1	chr3	19966273	19966473	+	1	NA	NA	NA	9319	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.015000	0.467662	
mm_120828.1	chr14	75174901	75175101	+	1	NA	NA	NA	38576	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.005000	0.532338	
mm_122700.1	chr14	52103921	52104121	-	1	NA	NA	NA	7	NM_001170982	15381	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	0.110000	0.616915	
mm_10891.1	chr2	25263264	25263464	+	1	NA	NA	NA	766	NM_175286	97031	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0.110000	0.681592	
mm_59388.1	chr7	26307094	26307294	+	1	NA	NA	NA	2	NM_009997	13086	Mm.154643	NM_009997	ENSMUSG00000074254	Cyp2a4	AI893559|Cyp15a1|D7Ucla4	cytochrome P450, family 2, subfamily a, polypeptide 4	protein-coding	0.010000	0.502488	-33(ATGTATAAAAGC,-,0.00)
mm_11993.1	chr2	55597200	55597400	+	1	NA	NA	NA	161330	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.005000	0.393035	
mm_145405.1	chr18	57468374	57468574	+	1	NA	NA	NA	-12	NM_001134697	629147	Mm.57415	NM_001134697	ENSMUSG00000069372	Ctxn3	ENSMUSG00000069372	cortexin 3	protein-coding	0.030000	0.507463	
mm_49512.1	chr6	29859594	29859794	+	1	NA	NA	NA	98	NM_001171001	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.010000	0.497512	
mm_23084.1	chr3	36863025	36863225	+	1	NA	NA	NA	19	NM_172679	229227	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0.100000	0.701493	
mm_135666.1	chr16	52407644	52407844	-	1	NA	NA	NA	45337	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.402985	
mm_126327.1	chr15	79891547	79891747	+	1	NA	NA	NA	-761	NM_001160415	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.035000	0.517413	
mm_119079.1	chr14	30880993	30881193	+	1	NA	NA	NA	1836	NM_181390	66175	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0.015000	0.507463	
mm_29831.1	chr3	129754919	129755119	-	1	NA	NA	NA	303	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.030000	0.527363	
mm_97987.1	chr11	83942066	83942266	+	1	NA	NA	NA	76	NM_030096	78394	Mm.280544	NM_030096	ENSMUSG00000020677	Ddx52	2700029C06Rik|ROK1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	protein-coding	0.105000	0.626866	
mm_144312.1	chr18	12643262	12643462	+	1	NA	NA	NA	-171	NM_028341	72747	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.060000	0.641791	
mm_122391.1	chr14	40966731	40966931	-	1	NA	NA	NA	65	NM_145928	52588	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.155000	0.726368	
mm_40570.1	chr5	63649319	63649519	+	1	NA	NA	NA	316	NM_177006	319807	Mm.319487	NM_028470	ENSMUSG00000090061	Nwd2	3110047P20Rik|B830017A01Rik|Hn1-ps2|mKIAA1239	NACHT and WD repeat domain containing 2	protein-coding	0.075000	0.611940	-5(GCTTTAATGCTC,+,0.00)
mm_28842.1	chr3	96594052	96594252	-	1	NA	NA	NA	29	NM_001293701	69870	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	0.070000	0.641791	
mm_40796.1	chr5	67608435	67608635	+	1	NA	NA	NA	652	NM_001033415	330096	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.110000	0.701493	
mm_23831.1	chr3	81932521	81932721	+	1	NA	NA	NA	20	NM_177662	229445	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	0.050000	0.592040	
mm_138896.1	chr17	43568388	43568588	+	1	NA	NA	NA	37	NM_013737	27226	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.035000	0.611940	
mm_4511.1	chr1	174190959	174191159	+	1	NA	NA	NA	18283	NM_011465	20739	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding	0.020000	0.467662	
mm_54922.1	chr6	47813254	47813454	-	1	NA	NA	NA	158	NM_009787	12304	Mm.2442	NM_009787	ENSMUSG00000025823	Pdia4	AI987846|Cai|ERp-72|Erp72	protein disulfide isomerase associated 4	protein-coding	0.080000	0.646766	
mm_54700.1	chr6	39558006	39558206	-	1	NA	NA	NA	-272	NM_172477	209773	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.055000	0.572139	
mm_92046.1	chr10	62495003	62495203	-	1	NA	NA	NA	-8298	NM_133672	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.030000	0.398010	
mm_155494.1	chrX	73737698	73737898	+	1	NA	NA	NA	-19305	NM_019587	140571	Mm.275600	NM_019587	ENSMUSG00000031385	Plxnb3	AI451018|Plxn6	plexin B3	protein-coding	0.000000	0.547264	
mm_79968.1	chr9	66445533	66445733	+	1	NA	NA	NA	68960	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.015000	0.427861	-80(GGCTCTATAGGG,-,0.00)
mm_109044.1	chr12	104247795	104247995	+	1	NA	NA	NA	-1	NR_033450	546546	Mm.390522	NM_001034870		Serpina3h	6C28|Spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3H	pseudo	0.000000	0.527363	
mm_107695.1	chr12	55398754	55398954	+	1	NA	NA	NA	29	NM_011968	26443	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.075000	0.621891	
mm_36247.1	chr4	63403152	63403352	-	1	NA	NA	NA	193	NM_001045514	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.015000	0.626866	
mm_103307.1	chr11	72795951	72796151	-	1	NA	NA	NA	-175	NM_001045536	195018	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	0.065000	0.497512	
mm_9368.1	chr1	172200448	172200648	-	1	NA	NA	NA	6256	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.005000	0.527363	
mm_168959.1	chr12	80127083	80127283	-	1	NA	NA	NA	5661	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.000000	0.522388	
mm_103803.1	chr11	82960560	82960760	-	1	NA	NA	NA	21	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.010000	0.447761	
mm_80167.1	chr9	71485967	71486167	+	1	NA	NA	NA	-84	NM_178602	28015	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	0.055000	0.512438	
mm_149182.1	chr19	9899548	9899748	+	1	NA	NA	NA	-115	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.080000	0.562189	
mm_37715.1	chr4	129500719	129500919	-	1	NA	NA	NA	9629	NM_001085491	68233	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0.065000	0.666667	
mm_150703.1	chr19	42268590	42268790	+	1	NA	NA	NA	11480	NR_037246	100526549		NR_037246	ENSMUSG00000093234	Mir3085	mir-3085|mmu-mir-3085	microRNA 3085	ncRNA	0.010000	0.542289	
mm_7415.1	chr1	119504149	119504349	-	1	NA	NA	NA	533	NM_022327	64143	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0.015000	0.512438	-33(CCTTTTCGGGCC,+,0.00)
mm_18361.1	chr2	58567505	58567705	-	1	NA	NA	NA	271	NM_001289660	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.100000	0.721393	
mm_98555.1	chr11	95120018	95120218	+	1	NA	NA	NA	1	NM_010055	13393	Mm.5194	NM_010055	ENSMUSG00000001510	Dlx3	AV237891|Dlx-3	distal-less homeobox 3	protein-coding	0.095000	0.656716	
mm_14713.1	chr2	143855517	143855717	+	1	NA	NA	NA	7556	NM_009751	12075	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0.035000	0.527363	
mm_124159.1	chr14	93497989	93498189	-	1	NA	NA	NA	390799	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.005000	0.388060	
mm_11727.1	chr2	37430849	37431049	+	1	NA	NA	NA	-30	NM_146253	241322	Mm.330182	NM_146253	ENSMUSG00000066798	Zbtb6	A830092L04Rik|ZID|Zfp482	zinc finger and BTB domain containing 6	protein-coding	0.060000	0.522388	
mm_106498.1	chr11	120348671	120348871	-	1	NA	NA	NA	93	NR_038126	66838	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0.160000	0.805970	
mm_158970.1	chr1	106870053	106870253	+	1	NA	NA	NA	8973	NM_009257	20724	Mm.268618	NM_009257	ENSMUSG00000067006	Serpinb5	1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 5	protein-coding	0.000000	0.432836	
mm_77207.1	chr8	113854838	113855038	-	1	NA	NA	NA	-6099	NM_172466	208936	Mm.167471	NM_172466	ENSMUSG00000053399	Adamts18	9630038L21|ADAMTS21|E130314N14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	protein-coding	0.005000	0.437811	
mm_73908.1	chr8	119558876	119559076	+	1	NA	NA	NA	-215	NM_019709	56453	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	0.055000	0.587065	-35(GGGTATATATAG,-,0.00),-33(GTATATATAGGG,+,0.00)
mm_28660.1	chr3	95241070	95241270	-	1	NA	NA	NA	-61	NM_001024841	229588	Mm.387177	NM_001024841	ENSMUSG00000068860	Gm128	Ment|pmis1	predicted gene 128	protein-coding	0.030000	0.582090	
mm_56066.1	chr6	86785426	86785626	-	1	NA	NA	NA	8058	NM_013471	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.000000	0.467662	
mm_46962.1	chr5	115147764	115147964	-	1	NA	NA	NA	10312	NM_175403	109154	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0.020000	0.492537	
mm_150327.1	chr19	34574582	34574782	+	1	NA	NA	NA	-8847	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.005000	0.427861	
mm_118806.1	chr14	25458785	25458985	+	1	NA	NA	NA	-300	NM_001310666	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.055000	0.562189	
mm_165959.1	chr4	88165456	88165656	+	1	NA	NA	NA	43516	NR_030478	735282		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	0.010000	0.407960	
mm_129545.1	chr15	79403141	79403341	-	1	NA	NA	NA	-2	NM_001253820	223693	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	0.170000	0.800995	
mm_118442.1	chr14	8118066	8118266	+	1	NA	NA	NA	19953	NM_178279	218699	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|MONaKA	PX domain containing serine/threonine kinase	protein-coding	0.005000	0.457711	
mm_86656.1	chr10	17724561	17724761	+	1	NA	NA	NA	1433	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.055000	0.527363	
mm_49491.1	chr6	29694163	29694363	+	1	NA	NA	NA	49	NM_146173	232670	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	0.180000	0.815920	
mm_150775.1	chr19	44294158	44294358	+	1	NA	NA	NA	582	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.050000	0.527363	
mm_82510.1	chr9	20497776	20497976	-	1	NA	NA	NA	-5130	NM_001110309	235028	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	0.000000	0.402985	
mm_74849.1	chr8	24595514	24595714	-	1	NA	NA	NA	52	NM_001293690	15930	Mm.392	NM_008324	ENSMUSG00000031551	Ido1	Ido|Indo	indoleamine 2,3-dioxygenase 1	protein-coding	0.040000	0.562189	
mm_137451.1	chr17	26534049	26534249	+	1	NA	NA	NA	-25677	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.005000	0.407960	65(CTCCTTAAAAAG,-,0.00),67(CCTTAAAAAGCA,+,0.00)
mm_102452.1	chr11	59809711	59809911	-	1	NA	NA	NA	-210	NM_001271357	216805	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	0.100000	0.696517	
mm_17357.1	chr2	26617368	26617568	-	1	NA	NA	NA	-10989	NM_019833	56279	Mm.279863	NM_019833	ENSMUSG00000036186	Fam69b	AB030186|AW209000|B230317C12Rik|PIP49	family with sequence similarity 69, member B	protein-coding	0.020000	0.492537	
mm_52425.1	chr6	113472184	113472384	+	1	NA	NA	NA	829	NM_134159	171095	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	0.030000	0.616915	
mm_46881.1	chr5	113908570	113908770	-	1	NA	NA	NA	36	NM_011779	23790	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0.160000	0.800995	
mm_157501.1	chrX	48513442	48513642	-	1	NA	NA	NA	21	NM_001290364	26926	Mm.240434	NM_012019	ENSMUSG00000036932	Aifm1	AIF|AIFsh2|Hq|Pdcd8	apoptosis-inducing factor, mitochondrion-associated 1	protein-coding	0.085000	0.671642	
mm_51160.1	chr6	70723570	70723770	+	1	NA	NA	NA	68505	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.020000	0.402985	
mm_30719.1	chr4	13742693	13742893	+	1	NA	NA	NA	-509	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.015000	0.517413	
mm_52716.1	chr6	119481845	119482045	+	1	NA	NA	NA	2277	NM_133940	101358	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.010000	0.477612	
mm_1913.1	chr1	85957468	85957668	+	1	NA	NA	NA	3487	NM_001033290	227326	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0.015000	0.542289	
mm_70542.1	chr8	13042663	13042863	+	1	NA	NA	NA	5455	NM_001242368	14058	Mm.262589	NM_007972	ENSMUSG00000031444	F10	Cf10|fX	coagulation factor X	protein-coding	0.010000	0.427861	17(GCATTTATATCC,+,0.00)
mm_32333.1	chr4	104367531	104367731	+	1	NA	NA	NA	93	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding	0.115000	0.756219	
mm_145728.1	chr18	64254273	64254473	+	1	NA	NA	NA	14	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.010000	0.507463	
mm_102871.1	chr11	69408460	69408660	-	1	NA	NA	NA	5115	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.050000	0.572139	
mm_81637.1	chr9	110880234	110880434	+	1	NA	NA	NA	12	NM_001146060	235633	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0.115000	0.721393	
mm_152911.1	chr19	27262202	27262402	-	1	NA	NA	NA	45282	NM_001161420	22359	Mm.4141	NM_013703	ENSMUSG00000024924	Vldlr	AA408956|AI451093|AW047288	very low density lipoprotein receptor	protein-coding	0.010000	0.497512	
mm_101318.1	chr11	22856428	22856628	-	1	NA	NA	NA	3207	NM_016888	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.000000	0.368159	
mm_62249.1	chr7	99267333	99267533	+	1	NA	NA	NA	-14	NM_010837	17760	Mm.154087	NM_010837	ENSMUSG00000055407	Map6	2810411E12Rik|Map-6|Mtap6|STOP	microtubule-associated protein 6	protein-coding	0.060000	0.582090	
mm_148750.1	chr19	6051299	6051499	+	1	NA	NA	NA	65	NR_105954	102465597		NR_105954	ENSMUSG00000098928	Mir6988	Gm27593|mmu-mir-6988	microRNA 6988	ncRNA	0.020000	0.636816	
mm_156796.1	chrX	162901586	162901786	+	1	NA	NA	NA	91	NM_018737	55936	Mm.2065	NM_018737	ENSMUSG00000031360	Ctps2	A830031M15Rik|AI326475|Ctpsh	cytidine 5'-triphosphate synthase 2	protein-coding	0.040000	0.601990	-46(CTTTTTAGGCGC,+,0.00)
mm_62253.1	chr7	99268306	99268506	+	1	NA	NA	NA	60	NM_001043355	17760	Mm.154087	NM_010837	ENSMUSG00000055407	Map6	2810411E12Rik|Map-6|Mtap6|STOP	microtubule-associated protein 6	protein-coding	0.135000	0.731343	
mm_130201.1	chr15	94589776	94589976	-	1	NA	NA	NA	-52	NM_008971	19230	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0.110000	0.716418	
mm_12473.1	chr2	71528424	71528624	+	1	NA	NA	NA	-921	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.040000	0.467662	
mm_170769.1	chr2	162390711	162390911	+	1	NA	NA	NA	-2	NR_040617	77645	Mm.447752	NR_040617	ENSMUSG00000084919	Ptprtos	C330008G21Rik	protein tyrosine phosphatase, receptor type T, opposite strand	ncRNA	0.005000	0.487562	
mm_173152.1	chrX	32487859	32488059	+	1	NA	NA	NA	-72096	NM_001168334	100040482	Mm.479861	NM_001168334	ENSMUSG00000096194	Btbd35f2	Gm2799	BTB domain containing 35, family member 2	protein-coding	0.040000	0.512438	-27(TTCTATAAAAGT,-,0.00)
mm_108646.1	chr12	85960186	85960386	+	1	NA	NA	NA	118755	NM_009368	21809	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.010000	0.552239	
mm_168861.1	chr12	30062794	30062994	-	1	NA	NA	NA	69730	NM_009417	22018	Mm.4991	NM_009417	ENSMUSG00000020673	Tpo	-	thyroid peroxidase	protein-coding	0.015000	0.487562	
mm_98652.1	chr11	96251667	96251867	+	1	NA	NA	NA	107	NR_037977	193022	Mm.169508	NR_037977		Gm53	-	predicted gene 53	ncRNA	0.090000	0.636816	
mm_38723.1	chr4	145234771	145234971	-	1	NA	NA	NA	11999	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.000000	0.398010	
mm_129959.1	chr15	85332535	85332735	-	1	NA	NA	NA	-3746	NM_016843	54138	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.005000	0.437811	68(TCTTATAGAGCC,+,0.00)
mm_28122.1	chr3	86920412	86920612	-	1	NA	NA	NA	372	NM_001195496	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.130000	0.761194	
mm_119188.1	chr14	32326600	32326800	+	1	NA	NA	NA	4681	NM_001081130	239017	Mm.318302	NM_001081130	ENSMUSG00000021913	Ogdhl	-	oxoglutarate dehydrogenase-like	protein-coding	0.005000	0.437811	
mm_24030.1	chr3	87536103	87536303	+	1	NA	NA	NA	10625	NM_012051	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.065000	0.636816	
mm_122935.1	chr14	54962991	54963191	-	1	NA	NA	NA	3516	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.035000	0.522388	
mm_145176.1	chr18	47040496	47040696	+	1	NA	NA	NA	81720	NM_178377	69456	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2	COMM domain containing 10	protein-coding	0.035000	0.467662	-32(TTCTATAAAAAC,-,0.00)
mm_163525.1	chr12	116757098	116757298	-	1	NA	NA	NA	271478	NM_011215	19276	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	0.005000	0.442786	
mm_85733.1	chr9	108452296	108452496	-	1	NA	NA	NA	-8122	NM_133744	72454	Mm.46488	NM_133744	ENSMUSG00000049305	Ccdc71	2600016J21Rik	coiled-coil domain containing 71	protein-coding	0.095000	0.731343	
mm_124297.1	chr14	103055048	103055248	-	1	NA	NA	NA	8136	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.045000	0.547264	
mm_28107.1	chr3	86548345	86548545	-	1	NA	NA	NA	-162	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.020000	0.427861	
mm_146278.1	chr18	77882432	77882632	+	1	NA	NA	NA	-55935	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.005000	0.522388	
mm_100672.1	chr11	3371188	3371388	-	1	NA	NA	NA	104	NM_173053	16886	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.025000	0.606965	
mm_72296.1	chr8	75448625	75448825	+	1	NA	NA	NA	31	NM_001164235	71831	Mm.443238	NM_027944	ENSMUSG00000031620	1700007B14Rik	-	RIKEN cDNA 1700007B14 gene	protein-coding	0.025000	0.552239	
mm_124992.1	chr15	22548817	22549017	+	1	NA	NA	NA	166067	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding	0.000000	0.477612	
mm_172126.1	chr6	3201279	3201479	+	1	NA	NA	NA	-87140	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.065000	0.502488	
mm_16093.1	chr2	168970366	168970566	+	1	NA	NA	NA	-7803	NR_040326	75508	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.045000	0.522388	
mm_84617.1	chr9	70488019	70488219	-	1	NA	NA	NA	15606	NM_033604	93836	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	0.000000	0.363184	
mm_84609.1	chr9	70211633	70211833	-	1	NA	NA	NA	4383	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.035000	0.497512	
mm_65139.1	chr7	19573260	19573460	-	1	NA	NA	NA	-17	NM_027189	69731	Mm.24540	NM_027189	ENSMUSG00000044709	Gemin7	2400008I04Rik|AI120175|AI461688	gem (nuclear organelle) associated protein 7	protein-coding	0.110000	0.721393	
mm_52146.1	chr6	97978658	97978858	+	1	NA	NA	NA	-13025	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.452736	
mm_150640.1	chr19	41829938	41830138	+	1	NA	NA	NA	68	NM_008043	14296	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	0.140000	0.731343	
mm_101120.1	chr11	12026143	12026343	-	1	NA	NA	NA	1728	NM_001177629	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.115000	0.636816	
mm_137.1	chr1	10878514	10878714	+	1	NA	NA	NA	-12740	NR_030645	100124448		NR_030645	ENSMUSG00000076948	Mir467e	Mirn467e	microRNA 467e	ncRNA	0.010000	0.402985	
mm_48644.1	chr5	145720030	145720230	-	1	NA	NA	NA	6	NM_017396	53973	Mm.379071	NM_017396	ENSMUSG00000075551	Cyp3a41a	Cyp3a41	cytochrome P450, family 3, subfamily a, polypeptide 41A	protein-coding	0.000000	0.477612	
mm_76748.1	chr8	95434535	95434735	-	1	NA	NA	NA	234	NM_008187	14894	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.125000	0.676617	
mm_120522.1	chr14	66784443	66784643	+	1	NA	NA	NA	84057	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.010000	0.452736	
mm_69512.1	chr7	134501029	134501229	-	1	NA	NA	NA	-124301	NM_001081331	71007	Mm.334285	NM_001081331	ENSMUSG00000030994	D7Ertd443e	4933400E14Rik|FATS|Gm497	DNA segment, Chr 7, ERATO Doi 443, expressed	protein-coding	0.000000	0.467662	
mm_118135.1	chr13	104817039	104817239	-	1	NA	NA	NA	-31	NM_026075	67288	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	0.080000	0.606965	
mm_111583.1	chr12	101837429	101837629	-	1	NA	NA	NA	-18410	NM_011812	23876	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	0.005000	0.388060	
mm_157929.1	chrX	79671434	79671634	-	1	NA	NA	NA	-99	NM_028025	71967	Mm.379207	NM_028025	ENSMUSG00000046942	Mageb16	2410003J06Rik	melanoma antigen family B, 16	protein-coding	0.015000	0.467662	
mm_60144.1	chr7	38183654	38183854	+	1	NA	NA	NA	-33	NM_028166	72244	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0.075000	0.681592	
mm_31549.1	chr4	55711604	55711804	+	1	NA	NA	NA	-179229	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.000000	0.447761	-33(CCCTATAAAGCC,+,0.00)
mm_64262.1	chr7	141746610	141746810	+	1	NA	NA	NA	-42301	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.015000	0.542289	
mm_61872.1	chr7	89426212	89426412	+	1	NA	NA	NA	6	NR_102276	101521	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	0.015000	0.452736	
mm_149094.1	chr19	8929561	8929761	+	1	NA	NA	NA	-33	NM_144872	225898	Mm.31008	NM_144872	ENSMUSG00000071647	Eml3	BC022146	echinoderm microtubule associated protein like 3	protein-coding	0.110000	0.736318	
mm_73370.1	chr8	105617658	105617858	+	1	NA	NA	NA	2292	NR_035492	100316712		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0.035000	0.572139	20(ACATTTATAGAC,+,0.00)
mm_35640.1	chr4	43518595	43518795	-	1	NA	NA	NA	4859	NM_009416	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.040000	0.636816	
mm_75227.1	chr8	39618339	39618539	-	1	NA	NA	NA	24239	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.005000	0.353234	
mm_18113.1	chr2	44996054	44996254	-	1	NA	NA	NA	27023	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.025000	0.547264	-82(GCCTTTATACAC,+,0.00)
mm_98114.1	chr11	87109472	87109672	+	1	NA	NA	NA	311	NM_025377	66140	Mm.45008	NM_025377	ENSMUSG00000020492	Ska2	1110001A07Rik|C78640|Fam33a	spindle and kinetochore associated complex subunit 2	protein-coding	0.075000	0.587065	85(TCTTTAATAGCT,+,0.00)
mm_41518.1	chr5	92392619	92392819	+	1	NA	NA	NA	4585	NM_001310665	109979	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0.045000	0.522388	
mm_3059.1	chr1	134083165	134083365	+	1	NA	NA	NA	-4110	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.020000	0.522388	
mm_88689.1	chr10	80116173	80116373	+	1	NA	NA	NA	470	NM_001301854	20869	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.140000	0.686567	
mm_108786.1	chr12	90738121	90738321	+	1	NA	NA	NA	816	NM_010050	13371	Mm.21389	NM_010050	ENSMUSG00000007682	Dio2	5DII|AI324267|DIOII	deiodinase, iodothyronine, type II	protein-coding	0.050000	0.582090	
mm_91663.1	chr10	42888380	42888580	-	1	NA	NA	NA	27968	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.005000	0.472637	
mm_101035.1	chr11	8600661	8600861	-	1	NA	NA	NA	63774	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.005000	0.512438	
mm_118036.1	chr13	101692258	101692458	-	1	NA	NA	NA	272	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.030000	0.452736	
mm_13623.1	chr2	113440974	113441174	+	1	NA	NA	NA	10	NM_001285459	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.030000	0.562189	
mm_17458.1	chr2	28556749	28556949	-	1	NA	NA	NA	6554	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.020000	0.567164	
mm_122740.1	chr14	54125319	54125519	-	1	NA	NA	NA	128510	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.427861	
mm_147984.1	chr18	67610634	67610834	-	1	NA	NA	NA	30602	NM_001081073	225659	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0.205000	0.835821	
mm_112091.1	chr12	112693480	112693680	-	1	NA	NA	NA	14740	NM_001100460	382639	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0.140000	0.716418	
mm_58553.1	chr7	4740092	4740292	+	1	NA	NA	NA	65	NM_001115018	232811	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	0.105000	0.721393	
mm_3914.1	chr1	162217398	162217598	+	1	NA	NA	NA	-125	NR_002870	474332	Mm.479755	NR_002870	ENSMUSG00000078190	Dnm3os	6030416H16Rik|Hag2|Npn1|P/L01	dynamin 3, opposite strand	ncRNA	0.025000	0.497512	
mm_153847.1	chr19	46338289	46338489	-	1	NA	NA	NA	271	NM_001164294	67116	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	0.045000	0.577114	
mm_102866.1	chr11	69405792	69405992	-	1	NA	NA	NA	-7658	NM_025915	67020	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.035000	0.626866	
mm_137257.1	chr17	24549981	24550181	+	1	NA	NA	NA	131	NM_013630	18763	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystic kidney disease 1 homolog	protein-coding	0.110000	0.751244	
mm_157323.1	chrX	23284511	23284711	-	1	NA	NA	NA	948	NM_001290476	67455	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	0.015000	0.407960	
mm_79703.1	chr9	60885792	60885992	+	1	NA	NA	NA	91344	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.005000	0.432836	
mm_51254.1	chr6	71908961	71909161	+	1	NA	NA	NA	8	NM_009088	20019	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0.065000	0.517413	
mm_65456.1	chr7	25463624	25463824	-	1	NA	NA	NA	13901	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.035000	0.502488	
mm_52491.1	chr6	114648830	114649030	+	1	NA	NA	NA	5833	NM_001253717	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.005000	0.487562	
mm_46743.1	chr5	110839672	110839872	-	1	NA	NA	NA	5	NM_153571	100900	Mm.200231	NM_153571	ENSMUSG00000043510	Hscb	AI325508|AW049829|Hsc20	HscB iron-sulfur cluster co-chaperone	protein-coding	0.080000	0.621891	
mm_56812.1	chr6	116671319	116671519	-	1	NA	NA	NA	2417	NM_178045	213391	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.005000	0.597015	
mm_35086.1	chr4	7897910	7898110	-	1	NA	NA	NA	337322	NR_040645	71510	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0.000000	0.263682	
mm_146451.1	chr18	86394824	86395024	+	1	NA	NA	NA	-28	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.050000	0.666667	
mm_115839.1	chr13	21287150	21287350	-	1	NA	NA	NA	5436	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.000000	0.422886	-85(CCCCCTTAAAGA,-,0.00),-84(CCCCTTAAAGAC,+,0.00),-82(CCTTAAAGACTG,+,0.00)
mm_18665.1	chr2	70824592	70824792	-	1	NA	NA	NA	788	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.035000	0.457711	
mm_13134.1	chr2	91922086	91922286	+	1	NA	NA	NA	-3	NM_007699	12672	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0.120000	0.746269	
mm_150902.1	chr19	45575026	45575226	+	1	NA	NA	NA	14511	NM_172639	226162	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	5330431N19Rik|Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.040000	0.631841	
mm_33546.1	chr4	130934619	130934819	+	1	NA	NA	NA	-9666	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.025000	0.592040	
mm_168905.1	chr12	55155253	55155453	+	1	NA	NA	NA	249	NM_001100109	665155	Mm.12848	NM_001100109	ENSMUSG00000079108	Srp54b	-	signal recognition particle 54B	protein-coding	0.065000	0.597015	
mm_90380.1	chr10	127266283	127266483	+	1	NA	NA	NA	121	NM_001190453	69654	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	0.080000	0.711443	
mm_88722.1	chr10	80169623	80169823	+	1	NA	NA	NA	1882	NM_007705	12696	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.000000	0.363184	
mm_154868.1	chrX	20679958	20680158	+	1	NA	NA	NA	-7896	NM_001310456	18555	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	0.005000	0.417910	
mm_62531.1	chr7	102240113	102240313	+	1	NA	NA	NA	9905	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.030000	0.532338	
mm_94038.1	chr10	128058650	128058850	-	1	NA	NA	NA	-232	NM_019766	56351	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3 (cytosolic)	protein-coding	0.115000	0.676617	
mm_78288.1	chr9	22196681	22196881	+	1	NA	NA	NA	8615	NM_001033813	619310	Mm.335016	NM_001033813	ENSMUSG00000074472	Zfp872	9530015I07Rik	zinc finger protein 872	protein-coding	0.005000	0.552239	
mm_147266.1	chr18	38881416	38881616	-	1	NA	NA	NA	-10940	NM_001033789	545253	Mm.244585	NM_001033789	ENSMUSG00000036452	Gm5820	EG545253	predicted gene 5820	protein-coding	0.010000	0.552239	49(GCTTAAAGAGAG,+,0.00)
mm_102465.1	chr11	59948078	59948278	-	1	NA	NA	NA	-31	NR_045273	100504121	Mm.383770	NR_045273	ENSMUSG00000085260	Med9os	1700013G23Rik	mediator complex subunit 9, opposite strand	ncRNA	0.080000	0.621891	
mm_172779.1	chr8	97429094	97429294	-	1	NA	NA	NA	-883221	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.050000	0.482587	
mm_59765.1	chr7	28833876	28834076	+	1	NA	NA	NA	182	NM_010706	16855	Mm.210336	NM_010706	ENSMUSG00000053964	Lgals4	gal-4	lectin, galactose binding, soluble 4	protein-coding	0.000000	0.567164	17(GGCCCTAAGAGG,-,0.00)
mm_36108.1	chr4	58840659	58840859	-	1	NA	NA	NA	-55039	NM_146920	258922	Mm.223327	NM_146920	ENSMUSG00000043385	Olfr267	MOR262-1	olfactory receptor 267	protein-coding	0.000000	0.333333	
mm_10476.1	chr2	14388343	14388543	+	1	NA	NA	NA	45	NM_001012305	277468	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0.010000	0.402985	
mm_5270.1	chr1	18058695	18058895	-	1	NA	NA	NA	78256	NM_030033	78081	Mm.319913	NM_030033	ENSMUSG00000025774	Crisp4	9230112K08Rik	cysteine-rich secretory protein 4	protein-coding	0.090000	0.631841	
mm_86398.1	chr9	123968564	123968764	-	1	NA	NA	NA	28	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.005000	0.487562	
mm_43758.1	chr5	140607243	140607443	+	1	NA	NA	NA	2	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.095000	0.661692	
mm_151820.1	chr19	5512763	5512963	-	1	NA	NA	NA	-2374	NM_001024560	225861	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0.020000	0.502488	
mm_146937.1	chr18	32137924	32138124	-	1	NA	NA	NA	181	NM_008934	19123	Mm.2786	NM_008934	ENSMUSG00000024386	Proc	PC	protein C	protein-coding	0.020000	0.552239	
mm_123792.1	chr14	70443068	70443268	-	1	NA	NA	NA	59	NM_001164082	67065	Mm.20420	NM_025945	ENSMUSG00000000776	Polr3d	2810426M17Rik|44kDa|AI326118|AW489084|BN51T|RPC4|TSBN51	polymerase (RNA) III (DNA directed) polypeptide D	protein-coding	0.105000	0.686567	
mm_116304.1	chr13	36734201	36734401	-	1	NA	NA	NA	176	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.070000	0.497512	
mm_113027.1	chr13	23472891	23473091	+	1	NA	NA	NA	-7090	NM_013483	12231	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0.005000	0.432836	
mm_36040.1	chr4	57241097	57241297	-	1	NA	NA	NA	60640	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.020000	0.507463	
mm_9302.1	chr1	171638967	171639167	-	1	NA	NA	NA	2833	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.537313	
mm_73262.1	chr8	104340666	104340866	+	1	NA	NA	NA	172	NM_024217	68119	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.095000	0.696517	
mm_78341.1	chr9	25293622	25293822	+	1	NA	NA	NA	41283	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.005000	0.323383	66(CAGTTTAAAAAG,-,0.00)
mm_167127.1	chr7	126458527	126458727	-	1	NA	NA	NA	4446	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.010000	0.567164	
mm_37734.1	chr4	129575099	129575299	-	1	NA	NA	NA	-1558	NM_001162433	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.025000	0.547264	
mm_173364.1	chrY	90819743	90819943	+	1	NA	NA	NA	19563	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.497512	
mm_20690.1	chr2	132792540	132792740	-	1	NA	NA	NA	11362	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.020000	0.467662	
mm_100141.1	chr11	115982740	115982940	+	1	NA	NA	NA	8115	NM_133663	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.050000	0.572139	
mm_4415.1	chr1	172499824	172500024	+	1	NA	NA	NA	-322	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.025000	0.497512	
mm_28578.1	chr3	93446113	93446313	-	1	NA	NA	NA	3883	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.085000	0.606965	
mm_117098.1	chr13	59822899	59823099	-	1	NA	NA	NA	148	NM_153538	214290	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.150000	0.766169	
mm_103593.1	chr11	78298386	78298586	-	1	NA	NA	NA	-3105	NM_017407	54141	Mm.24250	NM_017407	ENSMUSG00000002055	Spag5	AI874642|D11Bhm180e|Deepest|MAP126|Mastrin|S17	sperm associated antigen 5	protein-coding	0.015000	0.422886	
mm_39377.1	chr5	12383413	12383613	+	1	NA	NA	NA	347	NM_028882	108151	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.100000	0.706468	
mm_167865.1	chrX	20708409	20708609	+	1	NA	NA	NA	4600	NM_145628	236733	Mm.34489	NM_145628	ENSMUSG00000031066	Usp11	6230415D12Rik|mKIAA4085	ubiquitin specific peptidase 11	protein-coding	0.005000	0.358209	
mm_151464.1	chr19	58670090	58670290	+	1	NA	NA	NA	-175	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.030000	0.457711	
mm_128822.1	chr15	67128858	67129058	-	1	NA	NA	NA	47924	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.005000	0.597015	
mm_89234.1	chr10	87573753	87573953	+	1	NA	NA	NA	52058	NM_008777	18478	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0.000000	0.353234	
mm_83576.1	chr9	48319274	48319474	-	1	NA	NA	NA	21524	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.025000	0.432836	
mm_143123.1	chr17	57211547	57211747	-	1	NA	NA	NA	5581	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.040000	0.597015	
mm_53482.1	chr6	134981900	134982100	+	1	NA	NA	NA	-1	NM_001109914	381823	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	0.030000	0.532338	
mm_55710.1	chr6	72958352	72958552	-	1	NA	NA	NA	31	NM_025284	19240	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.130000	0.741294	18(GTGTATATAAGA,-,0.00)
mm_47253.1	chr5	121618751	121618951	-	1	NA	NA	NA	87	NM_178799	338350	Mm.482918	NM_178799	ENSMUSG00000042647	Acad12	9330129D05Rik	acyl-Coenzyme A dehydrogenase family, member 12	protein-coding	0.050000	0.582090	
mm_120343.1	chr14	63606922	63607122	+	1	NA	NA	NA	492	NM_173393	219149	Mm.32071	NM_173393	ENSMUSG00000035067	Xkr6	2700008G24Rik|BC024502|Xrg6	X-linked Kx blood group related 6	protein-coding	0.095000	0.676617	
mm_35593.1	chr4	43010149	43010349	-	1	NA	NA	NA	52	NM_001163233	60534	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	0.075000	0.661692	
mm_138691.1	chr17	35979478	35979678	+	1	NA	NA	NA	-111	NM_001165892	75210	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	0.075000	0.621891	
mm_20133.1	chr2	121380835	121381035	-	1	NA	NA	NA	5	NM_080459	140476	Mm.467475	NM_080459	ENSMUSG00000033498	Strc	DFNB16	stereocilin	protein-coding	0.015000	0.572139	
mm_156521.1	chrX	150593843	150594043	+	1	NA	NA	NA	4022	NM_008824	18639	Mm.249131	NM_008824	ENSMUSG00000025271	Pfkfb1	PFK/FBPase 1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	protein-coding	0.010000	0.462687	-6(CTCTTTAGAGTG,+,0.00)
mm_147528.1	chr18	52529827	52530027	-	1	NA	NA	NA	-60	NM_001286182	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.020000	0.537313	
mm_92664.1	chr10	80433301	80433501	-	1	NA	NA	NA	252	NM_001164150	21423	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.145000	0.781095	
mm_63641.1	chr7	128542268	128542468	+	1	NA	NA	NA	18785	NM_013863	29810	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0.010000	0.517413	
mm_75477.1	chr8	48555187	48555387	-	1	NA	NA	NA	119403	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.140000	0.746269	
mm_52917.1	chr6	122850383	122850583	+	1	NA	NA	NA	5674	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.030000	0.487562	
mm_111802.1	chr12	105009913	105010113	-	1	NA	NA	NA	-204	NM_172500	212073	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.125000	0.771144	
mm_82634.1	chr9	21963453	21963653	-	1	NA	NA	NA	23	NM_010149	13857	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	0.020000	0.631841	
mm_22582.1	chr3	12855690	12855890	+	1	NA	NA	NA	-615865	NM_178631	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.005000	0.457711	-20(CTATATAAAAGA,-,0.00)
mm_13520.1	chr2	110011625	110011825	+	1	NA	NA	NA	-6092	NM_026613	68201	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	0.015000	0.492537	
mm_81254.1	chr9	107982953	107983153	+	1	NA	NA	NA	2863	NM_026597	68176	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0.030000	0.601990	
mm_67143.1	chr7	73422440	73422640	-	1	NA	NA	NA	-46766	NR_040324	319783	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.010000	0.437811	
mm_20503.1	chr2	130424601	130424801	-	1	NA	NA	NA	-60	NM_001114541	319513	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	0.060000	0.597015	
mm_83697.1	chr9	50617348	50617548	-	1	NA	NA	NA	16	NM_001134902	270156	Mm.335149	NM_212449	ENSMUSG00000059820	AU019823	Gm639	expressed sequence AU019823	protein-coding	0.090000	0.616915	
mm_69285.1	chr7	128203226	128203426	-	1	NA	NA	NA	2	NR_045183	70973	Mm.441564	NR_045183	ENSMUSG00000108354	4931431B13Rik	1700108I23Rik|AA536668	RIKEN cDNA 4931431B13 gene	ncRNA	0.020000	0.567164	14(CCTTATAGAGAG,+,0.00)
mm_64651.1	chr7	4119971	4120171	-	1	NA	NA	NA	541	NM_001001454	57776	Mm.29729	NM_021324	ENSMUSG00000030428	Ttyh1	4930459B04Rik|6330408P11Rik|TTY1|mTTY1|tty	tweety family member 1	protein-coding	0.020000	0.492537	
mm_43899.1	chr5	144220181	144220381	+	1	NA	NA	NA	3297	NM_027410	70381	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	0.000000	0.472637	
mm_24330.1	chr3	89459209	89459409	+	1	NA	NA	NA	191	NM_026784	68603	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0.050000	0.601990	
mm_52539.1	chr6	115931830	115932030	+	1	NA	NA	NA	3	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.050000	0.606965	-55(CACTTTATAAGG,-,0.00),-53(CTTTATAAGGGT,+,0.00)
mm_57811.1	chr6	129451812	129452012	-	1	NA	NA	NA	88	NM_175526	243653	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	0.025000	0.512438	
mm_18650.1	chr2	69713407	69713607	-	1	NA	NA	NA	-901	NM_177244	320720	Mm.289566	NM_177244	ENSMUSG00000027086	Fastkd1	5330408N05Rik|mKIAA1800	FAST kinase domains 1	protein-coding	0.055000	0.562189	
mm_153067.1	chr19	32210926	32211126	-	1	NA	NA	NA	-13	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.060000	0.606965	
mm_61143.1	chr7	57590413	57590613	+	1	NA	NA	NA	-5	NM_001038701	14402	Mm.8004	NM_008071	ENSMUSG00000033676	Gabrb3	A230092K12Rik|AW049585|Cp1|Gabrb-3|beta3	gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	protein-coding	0.055000	0.661692	
mm_78185.1	chr9	21233415	21233615	+	1	NA	NA	NA	5817	NM_016679	50868	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.070000	0.641791	-32(GCTCATAGAGGC,+,0.00)
mm_51850.1	chr6	90369472	90369672	+	1	NA	NA	NA	78	NM_030260	80292	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	0.105000	0.701493	
mm_27300.1	chr3	48608996	48609196	-	1	NA	NA	NA	4	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo	0.060000	0.587065	
mm_114411.1	chr13	64275026	64275226	+	1	NA	NA	NA	-138	NM_172587	218294	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	0.070000	0.582090	
mm_57541.1	chr6	126644717	126644917	-	1	NA	NA	NA	984	NM_010595	16485	Mm.40424	NM_010595	ENSMUSG00000047976	Kcna1	AI840627|Kca1-1|Kv1.1|MBK1|Mk-1|Shak|mceph	potassium voltage-gated channel, shaker-related subfamily, member 1	protein-coding	0.100000	0.676617	
mm_77003.1	chr8	107403105	107403305	-	1	NA	NA	NA	0	NM_008706	18104	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	0.035000	0.592040	
mm_22480.1	chr3	5220959	5221159	+	1	NA	NA	NA	-236	NR_045905	72608	Mm.384359	NR_045905		2700069I18Rik	-	RIKEN cDNA 2700069I18 gene	ncRNA	0.010000	0.502488	
mm_166594.1	chr6	60485916	60486116	+	1	NA	NA	NA	-82309	NR_015565	208079	Mm.131226	NM_177329	ENSMUSG00000046764	A530053G22Rik	-	RIKEN cDNA A530053G22 gene	ncRNA	0.020000	0.393035	
mm_136213.1	chr16	89897222	89897422	-	1	NA	NA	NA	63505	NM_009384	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.020000	0.557214	
mm_160710.1	chr10	59458045	59458245	-	1	NA	NA	NA	-16366	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.020000	0.412935	
mm_13983.1	chr2	121506670	121506870	+	1	NA	NA	NA	47	NM_001290986	241627	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	0.055000	0.512438	-34(TCGCTTAAAGGG,-,0.00)
mm_152962.1	chr19	29361762	29361962	-	1	NA	NA	NA	9	NM_026362	67759	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0.065000	0.611940	
mm_58934.1	chr7	18011199	18011399	+	1	NA	NA	NA	1410	NM_028171	69785	Mm.46086	NM_027210	ENSMUSG00000057195	Ceacam13	1600012K03Rik|1600025J19Rik	carcinoembryonic antigen-related cell adhesion molecule 13	protein-coding	0.015000	0.437811	
mm_51780.1	chr6	88193620	88193820	+	1	NA	NA	NA	-4944	NM_008090	14461	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.065000	0.656716	
mm_19633.1	chr2	102813929	102814129	-	1	NA	NA	NA	87636	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.015000	0.363184	47(TTTTTTAGAGTC,+,0.00)
mm_148026.1	chr18	69415551	69415751	-	1	NA	NA	NA	69930	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.025000	0.487562	
mm_85122.1	chr9	95474375	95474575	-	1	NA	NA	NA	37521	NM_026476	67958	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0.015000	0.407960	
mm_27736.1	chr3	69071449	69071649	-	1	NA	NA	NA	-26807	NM_025863	66949	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.000000	0.313433	53(CTTTTTAAAGAT,+,0.00)
mm_48147.1	chr5	137150729	137150929	-	1	NA	NA	NA	-34622	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.512438	
mm_119105.1	chr14	30951399	30951599	+	1	NA	NA	NA	122	NM_011849	23955	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	0.110000	0.666667	
mm_101995.1	chr11	50953657	50953857	-	1	NA	NA	NA	-125	NM_008936	19127	Mm.1386	NM_008936	ENSMUSG00000044542	Prop1	Prop-1|df	paired like homeodomain factor 1	protein-coding	0.015000	0.492537	
mm_67010.1	chr7	65370779	65370979	-	1	NA	NA	NA	365	NM_001163574	21872	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.150000	0.756219	
mm_121979.1	chr14	25855224	25855424	-	1	NA	NA	NA	13169	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.005000	0.407960	
mm_57364.1	chr6	124768255	124768455	-	1	NA	NA	NA	1318	NM_001302642	13807	Mm.3913	NM_013509	ENSMUSG00000004267	Eno2	AI837106|D6Ertd375e|Eno-2|NSE	enolase 2, gamma neuronal	protein-coding	0.015000	0.582090	
mm_41185.1	chr5	88327712	88327912	+	1	NA	NA	NA	10500	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.000000	0.308458	-41(GGATTTAAAAGA,-,0.00)
mm_141093.1	chr17	25985607	25985807	-	1	NA	NA	NA	167	NM_001347334	50817	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	0.155000	0.721393	
mm_103177.1	chr11	70459837	70460037	-	1	NA	NA	NA	47	NM_023158	66102	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.020000	0.542289	
mm_84020.1	chr9	57681704	57681904	-	1	NA	NA	NA	1851	NM_009993	13077	Mm.15537	NM_009993	ENSMUSG00000032310	Cyp1a2	CP12|Cyp1a1|P450-3	cytochrome P450, family 1, subfamily a, polypeptide 2	protein-coding	0.035000	0.512438	
mm_77649.1	chr8	124563834	124564034	-	1	NA	NA	NA	5773	NM_007428	11606	Mm.301626	NM_007428	ENSMUSG00000031980	Agt	AI265500|AngI|AngII|Aogen|Serpina8	angiotensinogen (serpin peptidase inhibitor, clade A, member 8)	protein-coding	0.015000	0.582090	
mm_54553.1	chr6	37138832	37139032	-	1	NA	NA	NA	161044	NM_001081206	320127	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.000000	0.507463	
mm_79987.1	chr9	67011824	67012024	+	1	NA	NA	NA	31947	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.010000	0.437811	
mm_172986.1	chrM	1015	1215	+	1	NA	NA	NA	NA	NA									0.010000	0.333333	
mm_108629.1	chr12	85614289	85614489	+	1	NA	NA	NA	14371	NM_001205053	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.000000	0.398010	
mm_48619.1	chr5	144890138	144890338	-	1	NA	NA	NA	6578	NR_106006	102465629		NR_106006	ENSMUSG00000098822	Mir7039	Gm27824|mmu-mir-7039	microRNA 7039	ncRNA	0.005000	0.522388	
mm_9776.1	chr1	181101483	181101683	-	1	NA	NA	NA	42621	NM_026171	67459	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	0.020000	0.378109	
mm_37685.1	chr4	129227768	129227968	-	1	NA	NA	NA	43	NM_001285866	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.030000	0.597015	
mm_34331.1	chr4	142164536	142164736	+	1	NA	NA	NA	45572	NM_144531	71529	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	0.005000	0.567164	-52(CACTATAAAAGA,-,0.00)
mm_5265.1	chr1	17097611	17097811	-	1	NA	NA	NA	178	NM_020604	57339	Mm.143761	NM_020604	ENSMUSG00000042686	Jph1	ENSMUSG00000054314|JP-1|Jp1	junctophilin 1	protein-coding	0.130000	0.751244	
mm_147311.1	chr18	40923754	40923954	-	1	NA	NA	NA	665493	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.000000	0.263682	
mm_124120.1	chr14	79526131	79526331	-	1	NA	NA	NA	10557	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.040000	0.492537	
mm_146125.1	chr18	74442559	74442759	+	1	NA	NA	NA	40	NM_201600	17919	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	0.135000	0.741294	
mm_161579.1	chr16	26991540	26991740	-	1	NA	NA	NA	12	NM_001013761	239789	Mm.326909	NM_001013761	ENSMUSG00000068428	Gmnc	Gemc1|Gm1778|Gm606	geminin coiled-coil domain containing	protein-coding	0.005000	0.442786	
mm_155331.1	chrX	65517030	65517230	+	1	NA	NA	NA	469486	NM_027302	70062	Mm.45791	NM_027302	ENSMUSG00000031181	Ctag2	1700030B21Rik	cancer/testis antigen 2	protein-coding	0.000000	0.283582	
mm_119618.1	chr14	51128816	51129016	+	1	NA	NA	NA	-152	NM_030098	78416	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	0.010000	0.447761	
mm_41365.1	chr5	90508645	90508845	+	1	NA	NA	NA	-10204	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.000000	0.333333	-43(CTTTTTATATTG,+,0.00)
mm_41506.1	chr5	92347746	92347946	+	1	NA	NA	NA	1043	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.025000	0.437811	
mm_161395.1	chr14	103650275	103650475	+	1	NA	NA	NA	132	NM_198014	105439	Mm.27548	NM_198014	ENSMUSG00000055717	Slain1	9630044O09Rik|AA675320|AW742596	SLAIN motif family, member 1	protein-coding	0.120000	0.731343	
mm_38140.1	chr4	134762398	134762598	-	1	NA	NA	NA	5506	NM_145554	100017	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.020000	0.621891	
mm_117881.1	chr13	99087814	99088014	-	1	NA	NA	NA	7	NR_045495	69603	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	0.010000	0.432836	
mm_68527.1	chr7	112535469	112535669	-	1	NA	NA	NA	107863	NM_020606	57342	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding	0.050000	0.601990	
mm_97332.1	chr11	77216130	77216330	+	1	NA	NA	NA	-195	NM_177710	237860	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot homolog 2 (Drosophila)	protein-coding	0.155000	0.746269	
mm_103615.1	chr11	78550665	78550865	-	1	NA	NA	NA	-30	NM_133706	69071	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0.085000	0.621891	
mm_24281.1	chr3	89228956	89229156	+	1	NA	NA	NA	0	NM_013605	17829	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	0.035000	0.606965	
mm_155570.1	chrX	77510787	77510987	+	1	NA	NA	NA	-340	NM_020601	21372	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	0.095000	0.741294	
mm_99317.1	chr11	101442287	101442487	+	1	NA	NA	NA	142	NM_011289	19942	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	0.045000	0.611940	
mm_120517.1	chr14	66728798	66728998	+	1	NA	NA	NA	93647	NM_001271760	11549	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	0.010000	0.452736	
mm_92740.1	chr10	80939707	80939907	-	1	NA	NA	NA	9716	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.045000	0.611940	
mm_90745.1	chr10	5368416	5368616	-	1	NA	NA	NA	119798	NM_001347711	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.020000	0.517413	-73(CACCTTTAAAAG,-,0.00),-72(ACCTTTAAAAGG,-,0.00),-71(CCTTTAAAAGGT,+,0.00),-70(CTTTAAAAGGTC,+,0.00)
mm_105646.1	chr11	107131849	107132049	-	1	NA	NA	NA	-27	NM_176850	207165	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0.135000	0.860697	
mm_161156.1	chr13	24801427	24801627	+	1	NA	NA	NA	-130	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.110000	0.736318	
mm_38412.1	chr4	139109194	139109394	-	1	NA	NA	NA	-16324	NM_008675	17965	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	0.025000	0.507463	
mm_76926.1	chr8	105936819	105937019	-	1	NA	NA	NA	1473	NM_013640	19171	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0.035000	0.572139	
mm_145954.1	chr18	67641537	67641737	+	1	NA	NA	NA	38	NM_134138	107047	Mm.150701	NM_134138	ENSMUSG00000024537	Psmg2	1700017I17Rik|AW545363|Clast3|Tnfsf5ip1	proteasome (prosome, macropain) assembly chaperone 2	protein-coding	0.110000	0.666667	
mm_115291.1	chr13	111977904	111978104	+	1	NA	NA	NA	110068	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.065000	0.606965	
mm_102244.1	chr11	55077997	55078197	-	1	NA	NA	NA	34	NM_177471	52570	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	0.125000	0.751244	-42(CGGCATTTAAGG,-,0.00),-40(GCATTTAAGGCG,+,0.00)
mm_142752.1	chr17	48451435	48451635	-	1	NA	NA	NA	-34	NM_027292	70026	Mm.22613	NM_027292	ENSMUSG00000023995	Tspo2	2510027D20Rik|Bzrpl1	translocator protein 2	protein-coding	0.020000	0.557214	
mm_170401.1	chr18	6387538	6387738	+	1	NA	NA	NA	103008	NR_035446	100316773		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	0.010000	0.482587	-15(TCCTTTATAAAG,-,0.00),-13(CTTTATAAAGCG,+,0.00)
mm_57154.1	chr6	122730026	122730226	-	1	NA	NA	NA	12619	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.025000	0.457711	
mm_103629.1	chr11	78935372	78935572	-	1	NA	NA	NA	10181	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.577114	
mm_91407.1	chr10	31390356	31390556	-	1	NA	NA	NA	23979	NM_011509	100041294	Mm.7821	NM_011509		Supt4b	Gm3258|Supt4h1b|Supt4h2	suppressor of Ty 4B	protein-coding	0.015000	0.477612	-35(AGGCATAAAAGC,-,0.00)
mm_42799.1	chr5	121711945	121712145	+	1	NA	NA	NA	436	NM_009125	20239	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.190000	0.835821	
mm_82064.1	chr9	122747163	122747363	+	1	NA	NA	NA	-83	NM_001199736	671232	Mm.296421	NM_001199736	ENSMUSG00000094985	Topaz1	Gm9524	testis and ovary specific PAZ domain containing 1	protein-coding	0.075000	0.706468	
mm_137815.1	chr17	30060251	30060451	+	1	NA	NA	NA	55264	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.005000	0.422886	
mm_35876.1	chr4	49536733	49536933	-	1	NA	NA	NA	12713	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.015000	0.497512	
mm_84689.1	chr9	72174896	72175096	-	1	NA	NA	NA	-63177	NM_001253865	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.045000	0.482587	-56(CCTTTTATAAAG,+,0.00)
mm_108256.1	chr12	78350818	78351018	+	1	NA	NA	NA	124263	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.025000	0.462687	
mm_62961.1	chr7	119760853	119761053	+	1	NA	NA	NA	30	NM_212442	20216	Mm.334199	NM_016870	ENSMUSG00000030935	Acsm3	Sa|Sah	acyl-CoA synthetase medium-chain family member 3	protein-coding	0.025000	0.492537	
mm_109482.1	chr12	111429065	111429265	+	1	NA	NA	NA	11720	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.020000	0.537313	-31(CCTTATCTGGGC,+,0.00)
mm_173032.1	chrX	105876793	105876993	-	1	NA	NA	NA	52479	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.000000	0.353234	-46(GACCTTAAAAGC,-,0.00),-44(CCTTAAAAGCAC,+,0.00),31(GTTTTTAAAGTT,+,0.00)
mm_142065.1	chr17	35680636	35680836	-	1	NA	NA	NA	-6993	NM_010364	14885	Mm.10182	NM_010364	ENSMUSG00000001524	Gtf2h4	AW545633|BTF2 p52|p52	general transcription factor II H, polypeptide 4	protein-coding	0.015000	0.557214	
mm_85677.1	chr9	107770879	107771079	-	1	NA	NA	NA	23	NM_148930	83486	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	0.075000	0.641791	
mm_40776.1	chr5	67260704	67260904	+	1	NA	NA	NA	239	NM_030108	67878	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	0.100000	0.661692	-81(GGCCCTTTAAGG,-,0.00),-80(GCCCTTTAAGGC,-,0.00),-79(CCCTTTAAGGCC,+,0.00)
mm_147706.1	chr18	60811800	60812000	-	1	NA	NA	NA	-176	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.000000	0.547264	
mm_70511.1	chr8	12931592	12931792	+	1	NA	NA	NA	15799	NM_178076	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.030000	0.557214	
mm_73489.1	chr8	107056792	107056992	+	1	NA	NA	NA	15	NR_028367	66164	Mm.334789	NM_025391	ENSMUSG00000031917	Nip7	1110017C15Rik|6330509M23Rik|AA408773|AA410017|PEachy	NIP7, nucleolar pre-rRNA processing protein	protein-coding	0.080000	0.592040	
mm_45484.1	chr5	70960424	70960624	-	1	NA	NA	NA	-117907	NM_010252	14405	Mm.255292	NM_010252	ENSMUSG00000001260	Gabrg1	GabaA|GabaA/BZ	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1	protein-coding	0.015000	0.383085	
mm_40719.1	chr5	65955577	65955777	+	1	NA	NA	NA	-11447	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.025000	0.442786	
mm_172520.1	chr7	81151214	81151414	-	1	NA	NA	NA	36515	NM_001004184	434203	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	0.015000	0.537313	-36(GCCCATAAAAGG,-,0.00)
mm_66507.1	chr7	45092104	45092304	-	1	NA	NA	NA	9	NM_026555	52377	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0.060000	0.636816	
mm_106882.1	chr12	8011681	8011881	+	1	NA	NA	NA	34104	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.000000	0.398010	
mm_23658.1	chr3	68046740	68046940	+	1	NA	NA	NA	-17962	NM_001113421	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.010000	0.497512	
mm_161453.1	chr15	75268321	75268521	+	1	NA	NA	NA	0	NM_008530	17071	Mm.377095	NM_008530	ENSMUSG00000022583	Ly6f	-	lymphocyte antigen 6 complex, locus F	protein-coding	0.000000	0.512438	
mm_111122.1	chr12	81287011	81287211	-	1	NA	NA	NA	46069	NM_001167920	110893	Mm.443748	NM_080440	ENSMUSG00000079055	Slc8a3	AW742262|Ncx3	solute carrier family 8 (sodium/calcium exchanger), member 3	protein-coding	0.015000	0.328358	
mm_160781.1	chr10	127454533	127454733	+	1	NA	NA	NA	33766	NM_001168293	71750	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.020000	0.442786	
mm_35690.1	chr4	44072622	44072822	-	1	NA	NA	NA	-49	NM_001190414	50798	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	0.135000	0.711443	
mm_151420.1	chr19	56758173	56758373	+	1	NA	NA	NA	35901	NM_007419	11554	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.010000	0.447761	
mm_146200.1	chr18	76242048	76242248	+	1	NA	NA	NA	447	NM_010754	17126	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0.165000	0.810945	
mm_25943.1	chr3	131491464	131491664	+	1	NA	NA	NA	-73204	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.005000	0.422886	
mm_132831.1	chr16	45411423	45411623	+	1	NA	NA	NA	-2470	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.025000	0.442786	
mm_118899.1	chr14	26645491	26645691	+	1	NA	NA	NA	7394	NM_007479	11843	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.000000	0.383085	12(CTCTATATAGCC,+,0.00),22(CCCTATATAGCC,+,0.00)
mm_110935.1	chr12	76371333	76371533	-	1	NA	NA	NA	1167	NM_178744	268564	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.055000	0.587065	
mm_107870.1	chr12	69907805	69908005	+	1	NA	NA	NA	-14742	NM_201519	399510	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	0.050000	0.606965	
mm_139406.1	chr17	52468683	52468883	+	1	NA	NA	NA	-133926	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.010000	0.422886	
mm_124294.1	chr14	103054891	103055091	-	1	NA	NA	NA	7979	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.050000	0.567164	
mm_66132.1	chr7	31070533	31070733	-	1	NA	NA	NA	6064	NM_008557	17178	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	0.015000	0.507463	
mm_164827.1	chr18	37010613	37010813	+	1	NA	NA	NA	-145	NM_009960	12942	Mm.308500	NM_009960	ENSMUSG00000102206	Pcdha11	A830022B16Rik|Cnr7|Crnr7	protocadherin alpha 11	protein-coding	0.040000	0.432836	31(GCTTATAAAGGG,+,0.00),31(GCTTATAAAGGG,-,0.00)
mm_86558.1	chr10	11149381	11149581	+	1	NA	NA	NA	51	NM_001284354	268281	Mm.133101	NM_172937	ENSMUSG00000090112	Shprh	2610103K11Rik|AA450458|AU024614|BC006883|D230017O13Rik|E130018M05	SNF2 histone linker PHD RING helicase	protein-coding	0.100000	0.731343	
mm_78969.1	chr9	45318942	45319142	+	1	NA	NA	NA	-58	NM_001013373	214531	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.040000	0.597015	
mm_164803.1	chr18	24257267	24257467	+	1	NA	NA	NA	51373	NM_001160404	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.060000	0.597015	
mm_1799.1	chr1	80428147	80428347	+	1	NA	NA	NA	-17685	NR_040460	72208	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	Jr3	RIKEN cDNA 1700016L21 gene	ncRNA	0.005000	0.393035	-32(GCTTTTAAGCAC,+,0.00)
mm_811.1	chr1	45795925	45796125	+	1	NA	NA	NA	524	NM_028599	73674	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0.015000	0.353234	
mm_11436.1	chr2	32004250	32004450	+	1	NA	NA	NA	29900	NM_172268	227720	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	0.020000	0.472637	77(CTTTATAAAAGA,-,0.00)
mm_47646.1	chr5	125389469	125389669	-	1	NA	NA	NA	448	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.115000	0.731343	
mm_16393.1	chr2	179414836	179415036	+	1	NA	NA	NA	0	NM_026596	68175	Mm.158187	NM_026596		4930591A17Rik	-	RIKEN cDNA 4930591A17 gene	protein-coding	0.025000	0.547264	
mm_48188.1	chr5	137528404	137528604	-	1	NA	NA	NA	1090	NR_105846	102465227		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0.020000	0.621891	
mm_43869.1	chr5	143503478	143503678	+	1	NA	NA	NA	24415	NM_009007	19353	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	RAS-related C3 botulinum substrate 1	protein-coding	0.015000	0.407960	
mm_39307.1	chr5	7960993	7961193	+	1	NA	NA	NA	621	NM_054098	117167	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0.020000	0.407960	
mm_48166.1	chr5	137152867	137153067	-	1	NA	NA	NA	-36760	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.482587	
mm_72182.1	chr8	72319983	72320183	+	1	NA	NA	NA	1021	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.140000	0.741294	
mm_120207.1	chr14	61959808	61960008	+	1	NA	NA	NA	-277535	NR_028264	668253	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.015000	0.477612	-34(TGCTTTTAAAGC,-,0.00),-33(GCTTTTAAAGCT,+,0.00)
mm_21931.1	chr2	167046842	167047042	-	1	NA	NA	NA	-3447	NM_001291162	98999	Mm.297074	NM_001033196	ENSMUSG00000039501	Znfx1	AI481105|Astx3	zinc finger, NFX1-type containing 1	protein-coding	0.010000	0.517413	
mm_44467.1	chr5	23386900	23387100	-	1	NA	NA	NA	47353	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.040000	0.512438	
mm_173130.1	chrX	17945888	17946088	+	1	NA	NA	NA	-199882	NM_028568	73547	Mm.159027	NM_028568	ENSMUSG00000025043	Dusp21	1700094E07Rik|DSP21	dual specificity phosphatase 21	protein-coding	0.000000	0.467662	
mm_142481.1	chr17	45686811	45687011	-	1	NA	NA	NA	539	NM_026732	68463	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	0.020000	0.487562	
mm_137877.1	chr17	31520091	31520291	+	1	NA	NA	NA	76	NM_001083891	78330	Mm.28349	NM_030087	ENSMUSG00000024038	Ndufv3	1500032D16Rik	NADH dehydrogenase (ubiquinone) flavoprotein 3	protein-coding	0.090000	0.631841	
mm_144961.1	chr18	37819457	37819657	+	1	NA	NA	NA	11	NM_033583	93708	Mm.247203	NM_033583	ENSMUSG00000102543	Pcdhgc5	-	protocadherin gamma subfamily C, 5	protein-coding	0.010000	0.532338	1(TTTTTTAAAGAG,+,0.00)
mm_110350.1	chr12	37106654	37106854	-	1	NA	NA	NA	-1792	NM_008584	17286	Mm.341398	NM_008584	ENSMUSG00000036144	Meox2	AI528662|Gax|Mox-2|Mox2	mesenchyme homeobox 2	protein-coding	0.025000	0.417910	
mm_2472.1	chr1	105678075	105678275	+	1	NA	NA	NA	14314	NM_173187	227446	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	0.010000	0.328358	
mm_89393.1	chr10	89873387	89873587	+	1	NA	NA	NA	-22	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.085000	0.701493	
mm_155781.1	chrX	96455524	96455724	+	1	NA	NA	NA	188	NM_010417	15203	Mm.277092	NM_010417	ENSMUSG00000031209	Heph	C130006F04Rik|Cpl|mKIAA0698|sla	hephaestin	protein-coding	0.015000	0.482587	
mm_32032.1	chr4	95579354	95579554	+	1	NA	NA	NA	33	NM_029347	75578	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.010000	0.432836	
mm_160181.1	chr7	46240956	46241156	+	1	NA	NA	NA	69	NM_013624	18419	Mm.8020	NM_013624	ENSMUSG00000009487	Otog	4932420K09|Otgn|twt	otogelin	protein-coding	0.020000	0.601990	
mm_163791.1	chr14	11317431	11317631	+	1	NA	NA	NA	35054	NR_105811	102466641		NR_105811	ENSMUSG00000099218	Mir5124b	Gm27681|mmu-mir-5124b	microRNA 5124b	ncRNA	0.000000	0.358209	
mm_91253.1	chr10	22731874	22732074	-	1	NA	NA	NA	-527	NM_011603	237336	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.085000	0.671642	
mm_62331.1	chr7	100493692	100493892	+	1	NA	NA	NA	434	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.015000	0.547264	
mm_152569.1	chr19	11589200	11589400	-	1	NA	NA	NA	15504	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.015000	0.497512	
mm_169794.1	chr16	15637733	15637933	+	1	NA	NA	NA	-33	NM_011159	19090	Mm.71	NM_011159	ENSMUSG00000022672	Prkdc	AI326420|AU019811|DNA-PKcs|DNAPDcs|DNAPK|DNPK1|DOXNPH|HYRC1|XRCC7|dxnph|p460|scid|slip	protein kinase, DNA activated, catalytic polypeptide	protein-coding	0.095000	0.636816	
mm_125255.1	chr15	35303492	35303692	+	1	NA	NA	NA	7480	NM_054049	107587	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0.000000	0.368159	
mm_58883.1	chr7	17087876	17088076	+	1	NA	NA	NA	13936	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.010000	0.502488	
mm_88298.1	chr10	75316800	75317000	+	1	NA	NA	NA	23	NM_009630	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.065000	0.676617	
mm_37083.1	chr4	116371710	116371910	-	1	NA	NA	NA	92371	NM_001042743	17776	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0.000000	0.527363	
mm_48562.1	chr5	143165653	143165853	-	1	NA	NA	NA	-2	NR_040425	100042605	Mm.332809	NR_040424	ENSMUSG00000104529	Rbakdn	Gm3925	RB-associated KRAB zinc finger downstream neighbor (non-protein coding)	ncRNA	0.040000	0.611940	
mm_29992.1	chr3	135543150	135543350	-	1	NA	NA	NA	57639	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.010000	0.562189	
mm_160342.1	chr8	19239789	19239989	+	1	NA	NA	NA	-27	NM_001025351	574081	Mm.390013	NM_001025351	ENSMUSG00000071169	Defb46	Defb53|EG574081	defensin beta 46	protein-coding	0.000000	0.492537	
mm_39684.1	chr5	25848218	25848418	+	1	NA	NA	NA	88345	NM_001004365	242894	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	0.035000	0.537313	
mm_126062.1	chr15	77015924	77016124	+	1	NA	NA	NA	6703	NM_001164048	17189	Mm.404074	NM_013593	ENSMUSG00000018893	Mb	AI325109	myoglobin	protein-coding	0.025000	0.532338	
mm_109455.1	chr12	111160096	111160296	+	1	NA	NA	NA	-6174	NM_001286122	22031	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.025000	0.522388	
mm_136586.1	chr17	4994411	4994611	+	1	NA	NA	NA	-563	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.095000	0.666667	
mm_131538.1	chr16	17759557	17759757	+	1	NA	NA	NA	36	NM_145479	224023	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	0.095000	0.726368	
mm_7813.1	chr1	131827728	131827928	-	1	NA	NA	NA	-184	NM_173865	98396	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	0.090000	0.671642	
mm_129181.1	chr15	76294638	76294838	-	1	NA	NA	NA	304	NM_001195537	100503915	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	ENSMUSG00000071724|Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	0.055000	0.666667	
mm_153740.1	chr19	44695371	44695571	-	1	NA	NA	NA	-61923	NM_011037	18504	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0.005000	0.666667	
mm_33639.1	chr4	132974084	132974284	+	1	NA	NA	NA	89	NM_010208	14191	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.045000	0.606965	
mm_149862.1	chr19	25111462	25111662	+	1	NA	NA	NA	112033	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.010000	0.328358	
mm_163407.1	chr12	76072140	76072340	+	1	NA	NA	NA	105019	NM_010157	13983	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0.040000	0.562189	
mm_125635.1	chr15	62039188	62039388	+	1	NA	NA	NA	31	NR_132746	19296	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	plasmacytoma variant translocation 1	ncRNA	0.010000	0.452736	
mm_52519.1	chr6	115422028	115422228	+	1	NA	NA	NA	62	NM_011146	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.005000	0.437811	
mm_59706.1	chr7	28709616	28709816	+	1	NA	NA	NA	-7066	NM_001310687	50760	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	0.000000	0.492537	
mm_73067.1	chr8	94394721	94394921	+	1	NA	NA	NA	8321	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.035000	0.557214	
mm_151686.1	chr19	4305927	4306127	-	1	NA	NA	NA	195	NM_130863	110355	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.160000	0.786070	
mm_129273.1	chr15	77022349	77022549	-	1	NA	NA	NA	278	NM_001164048	17189	Mm.404074	NM_013593	ENSMUSG00000018893	Mb	AI325109	myoglobin	protein-coding	0.015000	0.527363	
mm_168830.1	chr12	22745571	22745771	-	1	NA	NA	NA	264572	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA	0.110000	0.726368	
mm_74665.1	chr8	13676279	13676479	-	1	NA	NA	NA	1208	NM_009025	19414	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.045000	0.502488	
mm_104771.1	chr11	98545737	98545937	-	1	NA	NA	NA	194	NM_011771	22780	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.160000	0.776119	
mm_86895.1	chr10	22302888	22303088	+	1	NA	NA	NA	-3732	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.000000	0.422886	
mm_3930.1	chr1	162982955	162983155	+	1	NA	NA	NA	1473	NM_008030	14262	Mm.2900	NM_008030	ENSMUSG00000026691	Fmo3	AW111792	flavin containing monooxygenase 3	protein-coding	0.005000	0.567164	
mm_172014.1	chr6	111391248	111391448	+	1	NA	NA	NA	745750	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.040000	0.527363	
mm_16788.1	chr2	10048501	10048701	-	1	NA	NA	NA	8	NM_027748	209361	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0.115000	0.706468	
mm_36102.1	chr4	58553217	58553417	-	1	NA	NA	NA	-24	NM_172989	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.160000	0.766169	
mm_132104.1	chr16	31428701	31428901	+	1	NA	NA	NA	48	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.085000	0.671642	
mm_172435.1	chr7	29798966	29799166	-	1	NA	NA	NA	14276	NM_013705	22693	Mm.292690	NM_013705	ENSMUSG00000047473	Zfp30	2610306P15Rik|Zfp-30	zinc finger protein 30	protein-coding	0.020000	0.398010	
mm_156558.1	chrX	151803140	151803340	+	1	NA	NA	NA	-42	NM_021523	59026	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	0.120000	0.601990	
mm_98978.1	chr11	98701244	98701444	+	1	NA	NA	NA	31	NM_009971	12985	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.010000	0.577114	
mm_38273.1	chr4	136885991	136886191	-	1	NA	NA	NA	86	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.015000	0.587065	
mm_64411.1	chr7	142512173	142512373	+	1	NA	NA	NA	-5502	NR_033261	677289	Mm.350054	NR_033261	ENSMUSG00000043795	Prr33	ENSMUSG00000043795|Gm14492|OTTMUSG00000016823	proline rich 33	ncRNA	0.030000	0.542289	
mm_169663.1	chr15	59672009	59672209	-	1	NA	NA	NA	23455	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.035000	0.487562	
mm_73794.1	chr8	117257042	117257242	+	1	NA	NA	NA	123	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.150000	0.776119	
mm_18105.1	chr2	44988762	44988962	-	1	NA	NA	NA	34315	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.075000	0.636816	
mm_137507.1	chr17	27029321	27029521	+	1	NA	NA	NA	162	NM_027544	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.035000	0.606965	
mm_1357.1	chr1	66321960	66322160	+	1	NA	NA	NA	336	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.035000	0.527363	
mm_26032.1	chr3	135462499	135462699	+	1	NA	NA	NA	-23012	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.000000	0.383085	
mm_105731.1	chr11	109231070	109231270	-	1	NA	NA	NA	67011	NM_001165934	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0.005000	0.383085	
mm_166258.1	chr5	87678908	87679108	+	1	NA	NA	NA	12800	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.378109	
mm_122915.1	chr14	54958564	54958764	-	1	NA	NA	NA	7943	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.015000	0.542289	
mm_84546.1	chr9	67327578	67327778	-	1	NA	NA	NA	-90952	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	0.010000	0.467662	
mm_41906.1	chr5	105579448	105579648	+	1	NA	NA	NA	60077	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.060000	0.552239	
mm_125139.1	chr15	30498482	30498682	+	1	NA	NA	NA	325989	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.010000	0.348259	
mm_85766.1	chr9	108855204	108855404	-	1	NA	NA	NA	1261	NM_134420	171429	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.015000	0.532338	
mm_33073.1	chr4	123787772	123787972	+	1	NA	NA	NA	-3	NM_183163	230726	Mm.37334	NM_183163	ENSMUSG00000043333	Rhbdl2	9130416B15|RRP2	rhomboid, veinlet-like 2 (Drosophila)	protein-coding	0.035000	0.651741	
mm_145383.1	chr18	57132919	57133119	+	1	NA	NA	NA	-71	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.070000	0.671642	
mm_100260.1	chr11	117332242	117332442	+	1	NA	NA	NA	29	NM_001113488	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.065000	0.681592	
mm_65717.1	chr7	28378330	28378530	-	1	NA	NA	NA	798	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.055000	0.601990	
mm_159338.1	chr3	55055093	55055293	-	1	NA	NA	NA	-49	NR_040593	70970	Mm.251485	NR_040593	ENSMUSG00000106589	4931419H13Rik	-	RIKEN cDNA 4931419H13 gene	ncRNA	0.110000	0.711443	
mm_97922.1	chr11	83575258	83575458	+	1	NA	NA	NA	3278	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.010000	0.398010	
mm_64362.1	chr7	142399496	142399696	+	1	NA	NA	NA	-11726	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.005000	0.517413	
mm_132093.1	chr16	31235489	31235689	+	1	NA	NA	NA	-34351	NM_030138	78618	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.020000	0.552239	-77(GGCCATAAAGGG,-,0.00)
mm_71279.1	chr8	40919689	40919889	+	1	NA	NA	NA	-6444	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.005000	0.358209	-20(AGCTCTTTAAGG,-,0.00)
mm_54977.1	chr6	48739150	48739350	-	1	NA	NA	NA	203	NM_008376	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.035000	0.552239	
mm_9406.1	chr1	172274102	172274302	-	1	NA	NA	NA	-15778	NM_013734	27222	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	0.005000	0.567164	-28(GGCCAGAAAAGG,-,0.00)
mm_78890.1	chr9	44604783	44604983	+	1	NA	NA	NA	-9	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.155000	0.761194	
mm_131053.1	chr16	4037185	4037385	+	1	NA	NA	NA	140	NM_010061	13419	Mm.291048	NM_010061	ENSMUSG00000005980	Dnase1	AI788650|DNaseI|Dnl1	deoxyribonuclease I	protein-coding	0.005000	0.373134	-51(TCCTTTAAAAGC,-,0.00),-50(CCTTTAAAAGCA,+,0.00)
mm_147395.1	chr18	44253763	44253963	-	1	NA	NA	NA	-16264	NM_010935	18169	Mm.57234	NM_010935	ENSMUSG00000038071	Npy6r	-	neuropeptide Y receptor Y6	protein-coding	0.000000	0.527363	
mm_85757.1	chr9	108649278	108649478	-	1	NA	NA	NA	2	NM_011790	23807	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.125000	0.706468	
mm_94707.1	chr11	20249516	20249716	+	1	NA	NA	NA	-192	NM_172260	216543	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.120000	0.686567	
mm_8990.1	chr1	165707919	165708119	-	1	NA	NA	NA	75	NM_178593	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.100000	0.731343	
mm_56698.1	chr6	114864631	114864831	-	1	NA	NA	NA	57021	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.030000	0.562189	
mm_111199.1	chr12	84218763	84218963	-	1	NA	NA	NA	18	NM_001163501	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.135000	0.721393	
mm_63338.1	chr7	126952918	126953118	+	1	NA	NA	NA	2483	NM_001252566	233878	Mm.283926	NM_144926	ENSMUSG00000030683	Sez6l2	AI835913|AW121566|BSRP-A|Psk1	seizure related 6 homolog like 2	protein-coding	0.020000	0.646766	
mm_163023.1	chr11	47988332	47988532	-	1	NA	NA	NA	86151	NR_105801	102466638		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	0.090000	0.691542	
mm_69334.1	chr7	128745174	128745374	-	1	NA	NA	NA	404	NM_001029982	207352	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	0.045000	0.631841	
mm_118165.1	chr13	105294349	105294549	-	1	NA	NA	NA	-1435	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.150000	0.766169	
mm_89791.1	chr10	102201734	102201934	+	1	NA	NA	NA	42755	NM_001162369	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.005000	0.378109	
mm_64128.1	chr7	141148864	141149064	+	1	NA	NA	NA	17678	NM_013782	27388	Mm.293591	NM_013782	ENSMUSG00000025495	Ptdss2	AI481134|AI988017|PSS2	phosphatidylserine synthase 2	protein-coding	0.010000	0.437811	56(CCCCTTATAGCC,+,0.00)
mm_148405.1	chr19	3851860	3852060	+	1	NA	NA	NA	187	NR_073190	12660	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.135000	0.736318	
mm_14222.1	chr2	127363107	127363307	+	1	NA	NA	NA	-79	NM_009633	11552	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	0.100000	0.716418	
mm_135284.1	chr16	38447576	38447776	-	1	NA	NA	NA	5013	NM_007414	11544	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.030000	0.557214	
mm_169660.1	chr15	58134944	58135144	-	1	NA	NA	NA	38	NM_027435	70472	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0.115000	0.711443	
mm_114374.1	chr13	63116934	63117134	+	1	NA	NA	NA	-122995	NR_110520	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.010000	0.487562	
mm_167746.1	chr9	109094295	109094495	+	1	NA	NA	NA	-1041	NM_172775	235611	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.015000	0.547264	
mm_163659.1	chr13	75618451	75618651	+	1	NA	NA	NA	-26495	NR_030451	751556		NR_030451	ENSMUSG00000076236	Mir682	Mirn682|mir-682|mmu-mir-682	microRNA 682	ncRNA	0.005000	0.383085	
mm_157865.1	chrX	75130903	75131103	-	1	NA	NA	NA	13	NM_008621	17524	Mm.391267	NM_008621	ENSMUSG00000031402	Mpp1	55kDa|C130070C03Rik|p55	membrane protein, palmitoylated	protein-coding	0.060000	0.621891	
mm_126830.1	chr15	88864009	88864209	+	1	NA	NA	NA	1915	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.025000	0.572139	
mm_155931.1	chrX	103489337	103489537	+	1	NA	NA	NA	-4121	NR_015508	70252	Mm.380486	NR_015508	ENSMUSG00000097571	Jpx	2010000I03Rik|2510040I06Rik|Enox	Jpx transcript, Xist activator (non-protein coding)	ncRNA	0.050000	0.482587	
mm_138512.1	chr17	35236627	35236827	+	1	NA	NA	NA	131	NM_023179	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.055000	0.611940	
mm_156840.1	chrX	164373512	164373712	+	1	NA	NA	NA	90	NM_010216	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.005000	0.358209	
mm_10931.1	chr2	25467213	25467413	+	1	NA	NA	NA	2436	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.020000	0.517413	
mm_89786.1	chr10	102158805	102159005	+	1	NA	NA	NA	47	NM_001162368	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.025000	0.467662	
mm_137280.1	chr17	24727756	24727956	+	1	NA	NA	NA	27	NM_001163945	66211	Mm.46198	NM_025425	ENSMUSG00000002500	Rpl3l	1110057H16Rik	ribosomal protein L3-like	protein-coding	0.005000	0.601990	
mm_143991.1	chr17	87691510	87691710	-	1	NA	NA	NA	19053	NM_008628	17685	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	0.020000	0.432836	-81(GCTTTTAGAACC,+,0.00)
mm_146165.1	chr18	75183776	75183976	+	1	NA	NA	NA	113441	NR_045394	100503117	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.005000	0.402985	
mm_42407.1	chr5	115011275	115011475	+	1	NA	NA	NA	-149	NM_029012	74585	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	0.185000	0.820896	
mm_139632.1	chr17	57367483	57367683	+	1	NA	NA	NA	8897	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.333333	
mm_89053.1	chr10	82879169	82879369	+	1	NA	NA	NA	12643	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.050000	0.507463	
mm_149940.1	chr19	27217457	27217657	+	1	NA	NA	NA	537	NM_001161420	22359	Mm.4141	NM_013703	ENSMUSG00000024924	Vldlr	AA408956|AI451093|AW047288	very low density lipoprotein receptor	protein-coding	0.115000	0.701493	
mm_26024.1	chr3	135438940	135439140	+	1	NA	NA	NA	281	NM_025356	66105	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.180000	0.845771	
mm_97252.1	chr11	75756728	75756928	+	1	NA	NA	NA	23941	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.010000	0.422886	
mm_75030.1	chr8	32004743	32004943	-	1	NA	NA	NA	-86640	NM_178591	211323	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding	0.015000	0.348259	
mm_35272.1	chr4	19908530	19908730	-	1	NA	NA	NA	13936	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.005000	0.417910	-68(TTTCATAAAAGG,-,0.00)
mm_135957.1	chr16	74730861	74731061	-	1	NA	NA	NA	-320049	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.005000	0.308458	
mm_61158.1	chr7	58710417	58710617	+	1	NA	NA	NA	52315	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.000000	0.388060	
mm_53013.1	chr6	123277736	123277936	+	1	NA	NA	NA	12035	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.417910	
mm_140628.1	chr17	12395570	12395770	-	1	NA	NA	NA	17061	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.025000	0.512438	
mm_144603.1	chr18	32397458	32397658	+	1	NA	NA	NA	-19274	NR_045403	402767	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.020000	0.552239	
mm_63105.1	chr7	122630774	122630974	+	1	NA	NA	NA	-40870	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.025000	0.482587	
mm_36879.1	chr4	107178248	107178448	-	1	NA	NA	NA	18	NM_025617	66526	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0.080000	0.616915	
mm_71978.1	chr8	70594333	70594533	+	1	NA	NA	NA	-48	NM_023627	71780	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.100000	0.651741	
mm_74810.1	chr8	22653300	22653500	-	1	NA	NA	NA	37	NM_011130	18970	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	0.120000	0.706468	
mm_154542.1	chrM	14438	14638	-	1	NA	NA	NA	NA	NA									0.025000	0.402985	4(GCCTATAAATGC,-,0.00)
mm_61919.1	chr7	90153277	90153477	+	1	NA	NA	NA	23145	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.363184	
mm_150113.1	chr19	29697816	29698016	+	1	NA	NA	NA	-25	NM_029993	77836	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	0.020000	0.398010	
mm_100649.1	chr11	3146272	3146472	-	1	NA	NA	NA	22351	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.005000	0.447761	
mm_22644.1	chr3	14865374	14865574	+	1	NA	NA	NA	1936	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.005000	0.348259	
mm_106281.1	chr11	118145720	118145920	-	1	NA	NA	NA	-16601	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.025000	0.522388	
mm_33119.1	chr4	124751529	124751729	+	1	NA	NA	NA	7848	NR_030480	735263		NR_030480	ENSMUSG00000076119	Mir698	Mirn698|mir-698|mmu-mir-698	microRNA 698	ncRNA	0.115000	0.686567	
mm_34412.1	chr4	145245748	145245948	+	1	NA	NA	NA	1022	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.010000	0.547264	
mm_125381.1	chr15	40655117	40655317	+	1	NA	NA	NA	175	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding	0.055000	0.671642	
mm_171866.1	chr5	24256663	24256863	+	1	NA	NA	NA	-765	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.060000	0.611940	
mm_152348.1	chr19	9984783	9984983	-	1	NA	NA	NA	2237	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.025000	0.487562	
mm_62086.1	chr7	93079765	93079965	+	1	NA	NA	NA	-14	NM_021427	58238	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.065000	0.636816	-70(CCCTTTATACCC,+,0.00)
mm_83493.1	chr9	45945883	45946083	-	1	NA	NA	NA	-6393	NR_106055	102465659		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.030000	0.606965	
mm_135171.1	chr16	35932635	35932835	-	1	NA	NA	NA	-5735	NM_030253	80285	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.030000	0.492537	
mm_65763.1	chr7	28695164	28695364	-	1	NA	NA	NA	2120	NM_001163702	233040	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	0.005000	0.502488	
mm_109757.1	chr12	117843398	117843598	+	1	NA	NA	NA	-363	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.070000	0.606965	
mm_118839.1	chr14	25642432	25642632	+	1	NA	NA	NA	39019	NM_001309430	100188919	Mm.473810	NM_001309430		Israa	-	immune system released activating agent	protein-coding	0.020000	0.492537	
mm_39012.1	chr4	152120562	152120762	-	1	NA	NA	NA	4319	NM_033042	85030	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0.060000	0.626866	
mm_108633.1	chr12	85705882	85706082	+	1	NA	NA	NA	19262	NM_016767	53314	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.025000	0.587065	
mm_151704.1	chr19	4498438	4498638	-	1	NA	NA	NA	45	NM_027237	69861	Mm.282978	NM_027237	ENSMUSG00000042041	2010003K11Rik	-	RIKEN cDNA 2010003K11 gene	protein-coding	0.015000	0.567164	
mm_9757.1	chr1	180829787	180829987	-	1	NA	NA	NA	-16282	NM_008210	15078	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	H3.3A	H3 histone, family 3A	protein-coding	0.030000	0.547264	83(GGCTTTTAATAG,-,0.00),85(CTTTTAATAGTA,+,0.00)
mm_86269.1	chr9	121718775	121718975	-	1	NA	NA	NA	-306	NM_010918	18087	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0.075000	0.611940	
mm_43629.1	chr5	138187353	138187553	+	1	NA	NA	NA	-82	NM_178612	66455	Mm.24592	NM_178612	ENSMUSG00000036968	Cnpy4	2610019P18Rik	canopy FGF signaling regulator 4	protein-coding	0.040000	0.457711	47(TTTTTTAAAGCT,+,0.00)
mm_81762.1	chr9	114368372	114368572	+	1	NA	NA	NA	148	NR_040383	75116	Mm.72675	NR_040383	ENSMUSG00000074039	4930520O04Rik	-	RIKEN cDNA 4930520O04 gene	ncRNA	0.050000	0.532338	-33(AACTATAAAGGG,-,0.00)
mm_79157.1	chr9	47799385	47799585	+	1	NA	NA	NA	18723	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.035000	0.582090	
mm_143834.1	chr17	84103415	84103615	-	1	NA	NA	NA	24855	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.015000	0.537313	
mm_112420.1	chr13	4059476	4059676	+	1	NA	NA	NA	-15	NM_134072	105387	Mm.26838	NM_134072	ENSMUSG00000033715	Akr1c14	9030611N15Rik|AW557061	aldo-keto reductase family 1, member C14	protein-coding	0.020000	0.432836	
mm_19176.1	chr2	84361894	84362094	-	1	NA	NA	NA	63272	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.010000	0.298507	-7(TTTTTTAAAGTG,+,0.00)
mm_80014.1	chr9	67858736	67858936	+	1	NA	NA	NA	18440	NM_177184	320528	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.010000	0.358209	
mm_65022.1	chr7	18345706	18345906	-	1	NA	NA	NA	9187	NM_001163685	26438	Mm.89991	NM_011963	ENSMUSG00000003505	Psg18	Cea-3|Cea3|mmCGM6	pregnancy specific glycoprotein 18	protein-coding	0.000000	0.482587	
mm_72978.1	chr8	92901328	92901528	+	1	NA	NA	NA	33	NM_027112	69543	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	0.025000	0.527363	
mm_126891.1	chr15	89497907	89498107	+	1	NA	NA	NA	-1850	NM_021423	58234	Mm.146855	NM_021423	ENSMUSG00000022623	Shank3	AI841104|SHANK3c-3|SHANK3c-4|Shank3b	SH3/ankyrin domain gene 3	protein-coding	0.020000	0.597015	
mm_100782.1	chr11	4816560	4816760	-	1	NA	NA	NA	16475	NM_001252253	18016	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	0.015000	0.462687	
mm_124923.1	chr15	12129408	12129608	+	1	NA	NA	NA	11657	NM_011767	22763	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.005000	0.308458	
mm_75349.1	chr8	43320654	43320854	-	1	NA	NA	NA	-13745	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.020000	0.457711	
mm_87036.1	chr10	28668499	28668699	+	1	NA	NA	NA	239	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.015000	0.457711	
mm_112248.1	chr12	113597879	113598079	-	1	NA	NA	NA	54071	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.030000	0.532338	
mm_127477.1	chr15	101273928	101274128	+	1	NA	NA	NA	7182	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.050000	0.626866	
mm_161702.1	chr17	24199857	24200057	-	1	NA	NA	NA	0	NM_001163852	224617	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	0.010000	0.567164	
mm_67055.1	chr7	67372709	67372909	-	1	NA	NA	NA	49	NM_001291192	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.160000	0.746269	
mm_149487.1	chr19	11813316	11813516	+	1	NA	NA	NA	5987	NM_001286543	20908	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.015000	0.442786	
mm_72475.1	chr8	83608087	83608287	+	1	NA	NA	NA	12	NM_018808	81489	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.120000	0.701493	78(GGGTATATAGAG,-,0.00)
mm_151791.1	chr19	5394294	5394494	-	1	NA	NA	NA	-5691	NM_016882	20227	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	0.045000	0.641791	
mm_162829.1	chr10	81394734	81394934	-	1	NA	NA	NA	1770	NM_001099917	72273	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.015000	0.512438	
mm_30951.1	chr4	33209189	33209389	+	1	NA	NA	NA	298	NM_177774	272009	Mm.156636	NM_177774	ENSMUSG00000054679	Srsf12	B830039L16|Sfrs13b|Srrp|Srsf13b	serine/arginine-rich splicing factor 12	protein-coding	0.135000	0.771144	
mm_12162.1	chr2	62147875	62148075	+	1	NA	NA	NA	101460	NM_033552	94229	Mm.314497	NM_033552	ENSMUSG00000026904	Slc4a10	NCBE|mKIAA4136	solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	protein-coding	0.005000	0.383085	
mm_114859.1	chr13	93307918	93308118	+	1	NA	NA	NA	-16	NM_152134	26556	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0.035000	0.427861	
mm_109788.1	chr12	3248954	3249154	-	1	NA	NA	NA	13263	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.005000	0.437811	
mm_114210.1	chr13	56159151	56159351	+	1	NA	NA	NA	19634	NM_145976	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.035000	0.527363	
mm_54934.1	chr6	48445424	48445624	-	1	NA	NA	NA	301	NM_020589	68910	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	0.090000	0.681592	
mm_49728.1	chr6	34709342	34709542	+	1	NA	NA	NA	-2	NM_145575	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.020000	0.487562	
mm_131354.1	chr16	13702578	13702778	+	1	NA	NA	NA	-27158	NR_040574	76684	Mm.491043	NR_040574		Pla2g10os	1810007I06Rik	phospholipase A2, group X, opposite strand	ncRNA	0.000000	0.358209	18(GTCTCTAAAAAA,-,0.00)
mm_172385.1	chr7	13278392	13278592	-	1	NA	NA	NA	229	NM_177312	321008	Mm.458832	NM_177312	ENSMUSG00000070814	6330408A02Rik	-	RIKEN cDNA 6330408A02 gene	protein-coding	0.060000	0.656716	
mm_14208.1	chr2	127262017	127262217	+	1	NA	NA	NA	-8112	NM_139308	99138	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0.000000	0.373134	
mm_66094.1	chr7	30973538	30973738	-	1	NA	NA	NA	-166	NR_038860	76415	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.045000	0.636816	
mm_101453.1	chr11	30213505	30213705	-	1	NA	NA	NA	6167	NM_175836	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.000000	0.313433	
mm_36913.1	chr4	108071268	108071468	-	1	NA	NA	NA	-15989	NR_105823	102465213		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	0.070000	0.651741	
mm_49509.1	chr6	29853967	29854167	+	1	NA	NA	NA	326	NM_001347084	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.015000	0.557214	
mm_115858.1	chr13	21293358	21293558	-	1	NA	NA	NA	-772	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.000000	0.338308	
mm_35588.1	chr4	42874133	42874333	-	1	NA	NA	NA	-30	NM_177785	277773	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	0.010000	0.477612	
mm_171003.1	chr2	79329254	79329454	-	1	NA	NA	NA	73928	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.015000	0.472637	
mm_41207.1	chr5	88553677	88553877	+	1	NA	NA	NA	-706	NM_023054	65961	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	0.050000	0.447761	16(GTCTAGAAAAGC,-,0.00)
mm_76444.1	chr8	85036606	85036806	-	1	NA	NA	NA	-209	NM_145390	212999	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	0.050000	0.502488	
mm_168073.1	chr10	110688100	110688300	+	1	NA	NA	NA	-57265	NM_178609	52679	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e	E2F transcription factor 7	protein-coding	0.055000	0.661692	
mm_85509.1	chr9	106247626	106247826	-	1	NA	NA	NA	4	NM_001291835	11655	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	0.120000	0.721393	
mm_36485.1	chr4	83021032	83021232	-	1	NA	NA	NA	-30	NM_177863	329872	Mm.242337	NM_177863	ENSMUSG00000059049	Frem1	BC037594|D430009N09|D630008K06|crf11|eye<m02Jus>|eyes2|heb|qbrick	Fras1 related extracellular matrix protein 1	protein-coding	0.015000	0.402985	
mm_79677.1	chr9	59750797	59750997	+	1	NA	NA	NA	-248	NM_001172070	71599	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0.130000	0.776119	
mm_144701.1	chr18	34862901	34863101	+	1	NA	NA	NA	1794	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.020000	0.552239	29(CACTATTAAAGC,-,0.00)
mm_94999.1	chr11	31872615	31872815	+	1	NA	NA	NA	1775	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.030000	0.472637	
mm_2758.1	chr1	130163731	130163931	+	1	NA	NA	NA	259212	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	0.005000	0.417910	
mm_8110.1	chr1	135919030	135919230	-	1	NA	NA	NA	77	NM_001313701	18772	Mm.4494	NM_019645	ENSMUSG00000026413	Pkp1	-	plakophilin 1	protein-coding	0.105000	0.736318	
mm_4690.1	chr1	180725963	180726163	+	1	NA	NA	NA	20	NM_133225	170760	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.135000	0.706468	
mm_66508.1	chr7	45093130	45093330	-	1	NA	NA	NA	-1017	NM_026555	52377	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0.020000	0.606965	
mm_46801.1	chr5	113069658	113069858	-	1	NA	NA	NA	359	NM_007773	12961	Mm.1215	NM_007773	ENSMUSG00000042240	Crybb2	Cryb-2	crystallin, beta B2	protein-coding	0.040000	0.572139	
mm_126040.1	chr15	76904252	76904452	+	1	NA	NA	NA	281	NM_012053	26961	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0.110000	0.601990	77(CTACATTAAAGG,-,0.00)
mm_124523.1	chr14	122106822	122107022	-	1	NA	NA	NA	52	NR_015586	319727	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	0.095000	0.646766	
mm_111881.1	chr12	108118621	108118821	-	1	NA	NA	NA	60563	NM_028262	52690	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0.035000	0.557214	
mm_134808.1	chr16	24727351	24727551	-	1	NA	NA	NA	5596	NM_001145954	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.005000	0.432836	
mm_120554.1	chr14	68083762	68083962	+	1	NA	NA	NA	-22	NM_010910	18039	Mm.1956	NM_010910	ENSMUSG00000022055	Nefl	AI847934|CMT2E|NF-L|NF68|Nfl	neurofilament, light polypeptide	protein-coding	0.095000	0.676617	-34(GCGTATAAATAG,-,0.00)
mm_37140.1	chr4	116990075	116990275	-	1	NA	NA	NA	4238	NM_009478	22275	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	0.005000	0.492537	
mm_116149.1	chr13	29984139	29984339	-	1	NA	NA	NA	152	NM_001289920	13557	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.110000	0.791045	
mm_105396.1	chr11	103403761	103403961	-	1	NA	NA	NA	8803	NM_183034	353047	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.015000	0.552239	
mm_145698.1	chr18	62548860	62549060	+	1	NA	NA	NA	49	NM_177829	328971	Mm.312675	NM_177829	ENSMUSG00000044176	Spink10	A230091H23Rik	serine peptidase inhibitor, Kazal type 10	protein-coding	0.050000	0.492537	
mm_127917.1	chr15	9535256	9535456	-	1	NA	NA	NA	-5480	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.005000	0.467662	
mm_111077.1	chr12	80168069	80168269	-	1	NA	NA	NA	-35325	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.020000	0.457711	
mm_44779.1	chr5	32132858	32133058	-	1	NA	NA	NA	-3514	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.040000	0.601990	
mm_109611.1	chr12	112731021	112731221	+	1	NA	NA	NA	-2201	NR_105905	102466989		NR_105905	ENSMUSG00000099165	Mir6940	Gm27655|mmu-mir-6940	microRNA 6940	ncRNA	0.045000	0.636816	
mm_99412.1	chr11	102276573	102276773	+	1	NA	NA	NA	7850	NM_148953	217217	Mm.216432	NM_148953	ENSMUSG00000034768	Asb16	-	ankyrin repeat and SOCS box-containing 16	protein-coding	0.070000	0.686567	
mm_109875.1	chr12	4916911	4917111	-	1	NA	NA	NA	-342	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.045000	0.567164	
mm_65282.1	chr7	24431865	24432065	-	1	NA	NA	NA	13717	NM_199013	210145	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.040000	0.547264	16(CCCTTTAAAAAA,-,0.00)
mm_8407.1	chr1	151920871	151921071	-	1	NA	NA	NA	165597	NM_001311166	66967	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0.005000	0.333333	-44(TCTTTAAAACTC,+,0.00)
mm_152283.1	chr19	8888670	8888870	-	1	NA	NA	NA	0	NR_027866	67531	Mm.475113	NR_027866		5730408K05Rik	2610018C13Rik	RIKEN cDNA 5730408K05 gene	ncRNA	0.065000	0.552239	-33(GGGTATATAAGG,-,0.00),36(GTCTTTATATGC,-,0.00)
mm_8094.1	chr1	135843715	135843915	-	1	NA	NA	NA	2954	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.030000	0.587065	
mm_101418.1	chr11	29514929	29515129	-	1	NA	NA	NA	4	NM_026465	67939	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0.085000	0.661692	
mm_2527.1	chr1	106861123	106861323	+	1	NA	NA	NA	43	NM_009257	20724	Mm.268618	NM_009257	ENSMUSG00000067006	Serpinb5	1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 5	protein-coding	0.015000	0.542289	
mm_107900.1	chr12	70842623	70842823	+	1	NA	NA	NA	17209	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.020000	0.338308	
mm_20765.1	chr2	142766160	142766360	-	1	NA	NA	NA	135204	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.005000	0.368159	
mm_150291.1	chr19	34492794	34492994	+	1	NA	NA	NA	-17759	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.005000	0.368159	-51(GCTTTTCAAGAG,+,0.00)
mm_84103.1	chr9	58312223	58312423	-	1	NA	NA	NA	889	NM_010729	16949	Mm.250492	NM_010729	ENSMUSG00000032334	Loxl1	Loxl	lysyl oxidase-like 1	protein-coding	0.110000	0.656716	
mm_51796.1	chr6	88465350	88465550	+	1	NA	NA	NA	41	NM_019685	56505	Mm.42195	NM_019685	ENSMUSG00000030079	Ruvbl1	2510009G06Rik|Pontin52|Tip49a	RuvB-like protein 1	protein-coding	0.070000	0.567164	
mm_73314.1	chr8	105178403	105178603	+	1	NA	NA	NA	7829	NM_001161458	12400	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0.000000	0.318408	79(TTTTCTAAAAGG,-,0.00)
mm_49889.1	chr6	38874708	38874908	+	1	NA	NA	NA	1382	NM_010433	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.035000	0.422886	
mm_75204.1	chr8	39604889	39605089	-	1	NA	NA	NA	37689	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.005000	0.248756	33(CCTTTTATATTT,+,0.00)
mm_34061.1	chr4	138454024	138454224	+	1	NA	NA	NA	-1024	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.125000	0.751244	
mm_112764.1	chr13	19352314	19352514	+	1	NA	NA	NA	43399	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.442786	
mm_106392.1	chr11	118663422	118663622	-	1	NA	NA	NA	97519	NM_001285438	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.030000	0.502488	60(ACCTATTTAAAG,-,0.00),62(CTATTTAAAGAC,+,0.00)
mm_3562.1	chr1	150429612	150429812	+	1	NA	NA	NA	36453	NM_021400	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.005000	0.338308	
mm_160423.1	chr8	85151813	85152013	+	1	NA	NA	NA	-11	NM_001037922	624855	Mm.390061	NM_001037922	ENSMUSG00000062687	Cks1brt	EG624855|Gm6531	CDC28 protein kinase 1b, retrogene	protein-coding	0.010000	0.527363	
mm_31238.1	chr4	44710816	44711016	+	1	NA	NA	NA	-476	NM_008782	18507	Mm.439659	NM_008782	ENSMUSG00000014030	Pax5	BSAP|EBB-1|KLP|Pax-5	paired box 5	protein-coding	0.080000	0.686567	78(ACTTTTATAGGG,+,0.00)
mm_29644.1	chr3	121847062	121847262	-	1	NA	NA	NA	-31947	NM_008991	19299	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.000000	0.497512	
mm_24084.1	chr3	87952991	87953191	+	1	NA	NA	NA	4398	NM_007759	12904	Mm.4757	NM_007759	ENSMUSG00000004885	Crabp2	AI893628|Crabp-2|CrabpII	cellular retinoic acid binding protein II	protein-coding	0.040000	0.547264	
mm_101830.1	chr11	47379260	47379460	-	1	NA	NA	NA	-58	NM_011891	24052	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.045000	0.626866	
mm_49791.1	chr6	35236434	35236634	+	1	NA	NA	NA	-16165	NR_015608	67705	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	0.025000	0.437811	
mm_169728.1	chr15	8099065	8099265	-	1	NA	NA	NA	44	NM_001081402	545085	Mm.321312	NM_198413	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	0.110000	0.711443	
mm_73850.1	chr8	117701847	117702047	+	1	NA	NA	NA	1	NM_008290	15486	Mm.276466	NM_008290	ENSMUSG00000031844	Hsd17b2	AI194836|AI194967|AI255511	hydroxysteroid (17-beta) dehydrogenase 2	protein-coding	0.025000	0.582090	
mm_2613.1	chr1	120484533	120484733	+	1	NA	NA	NA	20451	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.005000	0.542289	
mm_114174.1	chr13	55597207	55597407	+	1	NA	NA	NA	-2589	NM_146045	218271	Mm.139825	NM_146045	ENSMUSG00000021504	B4galt7	-	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)	protein-coding	0.005000	0.497512	
mm_40593.1	chr5	64230283	64230483	+	1	NA	NA	NA	26	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.160000	0.786070	
mm_148384.1	chr19	3325588	3325788	+	1	NA	NA	NA	2387	NM_013495	12894	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0.035000	0.442786	61(GAGTCTTAAAGC,-,0.00)
mm_49831.1	chr6	37870734	37870934	+	1	NA	NA	NA	23	NM_145076	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.160000	0.756219	
mm_122412.1	chr14	41030869	41031069	-	1	NA	NA	NA	-17136	NM_001316737	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.025000	0.348259	
mm_142603.1	chr17	46782559	46782759	-	1	NA	NA	NA	-3	NM_025433	66229	Mm.218533	NM_025433	ENSMUSG00000063888	Rpl7l1	1500016H10Rik	ribosomal protein L7-like 1	protein-coding	0.070000	0.592040	
mm_122241.1	chr14	33382041	33382241	-	1	NA	NA	NA	28883	NM_001310452	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.010000	0.427861	25(TGCTTTAAAAAC,-,0.00)
mm_156587.1	chrX	152178851	152179051	+	1	NA	NA	NA	-58	NM_001005475	245666	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	0.005000	0.577114	
mm_16466.1	chr2	180709214	180709414	+	1	NA	NA	NA	685	NM_177852	23856	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.045000	0.507463	
mm_148763.1	chr19	6061373	6061573	+	1	NA	NA	NA	266	NM_013859	29805	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	0.155000	0.716418	
mm_94062.1	chr10	128368878	128369078	-	1	NA	NA	NA	1059	NM_001081040	210582	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.105000	0.681592	
mm_57943.1	chr6	134792425	134792625	-	1	NA	NA	NA	103	NM_130447	70686	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	0.050000	0.577114	
mm_17767.1	chr2	32789370	32789570	-	1	NA	NA	NA	-5065	NM_025619	227736	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	0.040000	0.567164	
mm_166403.1	chr5	136059931	136060131	+	1	NA	NA	NA	2764	NM_027158	69665	Mm.75713	NM_027158	ENSMUSG00000006143	Upk3bl	2310043J07Rik	uroplakin 3B-like	protein-coding	0.045000	0.597015	
mm_25622.1	chr3	118609056	118609256	+	1	NA	NA	NA	46978	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.005000	0.333333	
mm_123810.1	chr14	70522591	70522791	-	1	NA	NA	NA	1390	NM_011359	20389	Mm.24040	NM_011359	ENSMUSG00000022097	Sftpc	Bricd6|SP-C|SP5|SPC|Sftp-2|Sftp2|pro-SpC	surfactant associated protein C	protein-coding	0.035000	0.572139	
mm_8084.1	chr1	135607455	135607655	-	1	NA	NA	NA	-22200	NM_173437	215690	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.010000	0.601990	
mm_121920.1	chr14	23308781	23308981	-	1	NA	NA	NA	-214310	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA	0.010000	0.368159	
mm_92013.1	chr10	62342552	62342752	-	1	NA	NA	NA	2045	NR_038038	70162	Mm.441212	NR_038038		Hk1os	2210417K05Rik	hexokinase 1, opposite strand	ncRNA	0.020000	0.592040	-91(GCTTATCTGGCC,+,0.00)
mm_134903.1	chr16	30186149	30186349	-	1	NA	NA	NA	81283	NM_027904	71756	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.050000	0.487562	
mm_48331.1	chr5	139018306	139018506	-	1	NA	NA	NA	-23453	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.000000	0.547264	
mm_46337.1	chr5	101851403	101851603	-	1	NA	NA	NA	86373	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.000000	0.512438	
mm_152652.1	chr19	12765366	12765566	-	1	NA	NA	NA	166	NM_170786	12803	Mm.290924	NM_053007	ENSMUSG00000079415	Cntf	AI429687	ciliary neurotrophic factor	protein-coding	0.005000	0.502488	
mm_74228.1	chr8	124197047	124197247	+	1	NA	NA	NA	-34247	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0.015000	0.537313	
mm_92374.1	chr10	76345213	76345413	-	1	NA	NA	NA	-22	NM_001081419	64451	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	0.185000	0.845771	
mm_119749.1	chr14	54153095	54153295	+	1	NA	NA	NA	100734	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.437811	
mm_105192.1	chr11	102026843	102027043	-	1	NA	NA	NA	12	NM_007863	13384	Mm.20449	NM_007863	ENSMUSG00000052373	Mpp3	6430514B01|Dlgh3	membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)	protein-coding	0.155000	0.791045	
mm_65228.1	chr7	19715288	19715488	-	1	NA	NA	NA	41	NM_001109748	53333	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40 homolog (yeast)	protein-coding	0.115000	0.696517	
mm_161724.1	chr17	28042341	28042541	+	1	NA	NA	NA	38143	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.035000	0.567164	
mm_31053.1	chr4	41190549	41190749	+	1	NA	NA	NA	54628	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.020000	0.477612	
mm_120639.1	chr14	70520851	70521051	+	1	NA	NA	NA	-691	NR_033241	12153	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.030000	0.512438	
mm_71200.1	chr8	40886531	40886731	+	1	NA	NA	NA	24264	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.020000	0.482587	19(CTCCTTTAAGGG,-,0.00),21(CCTTTAAGGGTT,+,0.00)
mm_55436.1	chr6	66896416	66896616	-	1	NA	NA	NA	119	NM_001177556	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.150000	0.776119	
mm_37538.1	chr4	125066541	125066741	-	1	NA	NA	NA	-52	NM_175246	76793	Mm.22548	NM_175246	ENSMUSG00000050213	Snip1	2410133M08Rik	Smad nuclear interacting protein 1	protein-coding	0.095000	0.671642	
mm_114469.1	chr13	67810072	67810272	+	1	NA	NA	NA	-3644	NM_198322	212569	Mm.358842	NM_198322	ENSMUSG00000030446	Zfp273	6820416H06Rik|Rslcan1	zinc finger protein 273	protein-coding	0.045000	0.497512	33(GTCTTTAAACCC,+,0.00)
mm_69688.1	chr7	139990932	139991132	-	1	NA	NA	NA	1530	NM_007403	11501	Mm.15969	NM_007403	ENSMUSG00000025473	Adam8	ADAM 8|CD156|CD156a|E430039A18Rik|MS2	a disintegrin and metallopeptidase domain 8	protein-coding	0.000000	0.532338	
mm_13082.1	chr2	91206445	91206645	+	1	NA	NA	NA	3633	NM_007387	11432	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.005000	0.532338	
mm_33759.1	chr4	134343556	134343756	+	1	NA	NA	NA	190	NM_001346578	230810	Mm.358876	NM_001039677	ENSMUSG00000028836	Slc30a2	ZnT-2|Znt2	solute carrier family 30 (zinc transporter), member 2	protein-coding	0.050000	0.611940	
mm_94163.1	chr10	128746206	128746406	-	1	NA	NA	NA	-1573	NM_030100	78428	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	0.005000	0.447761	
mm_126504.1	chr15	81776208	81776408	+	1	NA	NA	NA	-26365	NM_153484	21685	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.030000	0.641791	
mm_74787.1	chr8	22166324	22166524	-	1	NA	NA	NA	11	NM_011848	23954	Mm.41413	NM_011848	ENSMUSG00000031478	Nek3	-	NIMA (never in mitosis gene a)-related expressed kinase 3	protein-coding	0.080000	0.681592	
mm_33032.1	chr4	122689250	122689450	+	1	NA	NA	NA	91	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	0.005000	0.502488	
mm_173106.1	chrX	155365698	155365898	+	1	NA	NA	NA	-27338	NM_001313711	53381	Mm.247542	NM_016764	ENSMUSG00000025289	Prdx4	AOE372|Prx-iv|Prx4|TRANK	peroxiredoxin 4	protein-coding	0.000000	0.527363	
mm_73934.1	chr8	120002605	120002805	+	1	NA	NA	NA	10267	NM_001310635	78892	Mm.264680	NM_030209	ENSMUSG00000031825	Crispld2	1810049K24Rik|Lcrisp2|Lgl1|coffeecrisp	cysteine-rich secretory protein LCCL domain containing 2	protein-coding	0.020000	0.577114	
mm_111260.1	chr12	85138658	85138858	-	1	NA	NA	NA	12506	NM_146244	238323	Mm.44829	NM_146244	ENSMUSG00000019235	Rps6kl1	A830084F09Rik|AW046440	ribosomal protein S6 kinase-like 1	protein-coding	0.035000	0.562189	
mm_40983.1	chr5	77260220	77260420	+	1	NA	NA	NA	-5174	NM_011263	19712	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.010000	0.597015	
mm_71890.1	chr8	69832573	69832773	+	1	NA	NA	NA	-31	NM_001024954	80720	Mm.210823	NM_030555	ENSMUSG00000031860	Pbx4	2410015M21Rik|AI429113|AW045266	pre B cell leukemia homeobox 4	protein-coding	0.105000	0.691542	
mm_171797.1	chr5	121204402	121204602	+	1	NA	NA	NA	1	NM_011290	19988	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	0.050000	0.547264	2(GCTTATAGACCG,+,0.00)
mm_144215.1	chr18	9745229	9745429	+	1	NA	NA	NA	37681	NM_130449	140792	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.000000	0.318408	
mm_124226.1	chr14	100482140	100482340	-	1	NA	NA	NA	-332444	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.015000	0.472637	
mm_71904.1	chr8	70072829	70073029	+	1	NA	NA	NA	5	NM_181540	107770	Mm.37974	NM_181540	ENSMUSG00000036151	Tm6sf2	-	transmembrane 6 superfamily member 2	protein-coding	0.085000	0.716418	
mm_127211.1	chr15	99235167	99235367	+	1	NA	NA	NA	10291	NM_010601	16512	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0.025000	0.417910	
mm_169775.1	chr1	60900791	60900991	+	1	NA	NA	NA	-8134	NM_009843	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.045000	0.517413	
mm_157644.1	chrX	57304794	57304994	-	1	NA	NA	NA	33835	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	0.005000	0.517413	
mm_70968.1	chr8	27042474	27042674	+	1	NA	NA	NA	19	NM_054057	114863	Mm.277501	NM_054057	ENSMUSG00000031485	Prosc	1700024N20Rik|2200002F22Rik	proline synthetase co-transcribed	protein-coding	0.090000	0.691542	
mm_120085.1	chr14	57798525	57798725	+	1	NA	NA	NA	201	NR_037238	100526476		NR_037238	ENSMUSG00000092784	Mir3077	mir-3077|mmu-mir-3077	microRNA 3077	ncRNA	0.130000	0.691542	
mm_59371.1	chr7	25704097	25704297	+	1	NA	NA	NA	14856	NM_028771	52132	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.010000	0.552239	
mm_90405.1	chr10	127380747	127380947	+	1	NA	NA	NA	-9464	NM_001168292	71750	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.140000	0.850746	
mm_56306.1	chr6	91807301	91807501	-	1	NA	NA	NA	-8	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.070000	0.681592	
mm_49893.1	chr6	38918882	38919082	+	1	NA	NA	NA	-4	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.000000	0.412935	-12(CTCTTTATAAAG,-,0.00),-10(CTTTATAAAGAA,+,0.00)
mm_99918.1	chr11	110399035	110399235	+	1	NA	NA	NA	13	NM_011943	26399	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.040000	0.532338	
mm_128216.1	chr15	36271270	36271470	-	1	NA	NA	NA	11777	NM_013923	30945	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0.010000	0.308458	
mm_74983.1	chr8	27141826	27142026	-	1	NA	NA	NA	-984	NR_045840	71082	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.030000	0.497512	-43(AAATTTAAAAGG,-,0.00)
mm_136185.1	chr16	88962771	88962971	-	1	NA	NA	NA	2	NM_183296	71369	Mm.251757	NM_130872	ENSMUSG00000096534	Krtap16-3	5430404J20Rik|Krtap16-10	keratin associated protein 16-3	protein-coding	0.025000	0.462687	-35(GGGTATAAAAGC,-,0.00)
mm_55185.1	chr6	52175875	52176075	-	1	NA	NA	NA	10301	NR_131182	105242657	Mm.490651	NR_131182	ENSMUSG00000056445	Hoxaas2	2810043O09Rik|5730446D14Rik	Hoxa cluster antisense RNA 2	ncRNA	0.120000	0.741294	
mm_104417.1	chr11	94692460	94692660	-	1	NA	NA	NA	11939	NM_001007584	432589	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	OTTMUSG00000002038	predicted gene 11541	protein-coding	0.005000	0.492537	
mm_37248.1	chr4	118228912	118229112	-	1	NA	NA	NA	-18448	NR_106085	102466820		NR_106085	ENSMUSG00000098596	Mir7226	Gm27630|mmu-mir-7226	microRNA 7226	ncRNA	0.010000	0.532338	
mm_139605.1	chr17	57303778	57303978	+	1	NA	NA	NA	24778	NM_001163815	22324	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.025000	0.492537	
mm_83498.1	chr9	45952772	45952972	-	1	NA	NA	NA	2377	NM_172257	214597	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	0.025000	0.497512	
mm_92534.1	chr10	79586999	79587199	-	1	NA	NA	NA	37	NM_199226	21830	Mm.89197	NM_011583	ENSMUSG00000020317	Theg	-	testicular haploid expressed gene	protein-coding	0.015000	0.552239	
mm_37662.1	chr4	129084423	129084623	-	1	NA	NA	NA	-21007	NM_025452	66260	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.005000	0.388060	
mm_8398.1	chr1	151497596	151497796	-	1	NA	NA	NA	3127	NM_011277	19821	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0.010000	0.412935	
mm_68557.1	chr7	114447309	114447509	-	1	NA	NA	NA	32155	NM_011055	18576	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0.005000	0.368159	
mm_25067.1	chr3	99253681	99253881	+	1	NA	NA	NA	21	NM_009323	21384	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0.155000	0.776119	
mm_98291.1	chr11	89066320	89066520	+	1	NA	NA	NA	5669	NR_110336	414094	Mm.124287	NM_001001497		Dgkeos	A930013B10Rik	diacylglycerol kinase, epsilon, opposite strand	ncRNA	0.020000	0.492537	
mm_26455.1	chr3	142712719	142712919	+	1	NA	NA	NA	11771	NM_001293560	229905	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0.010000	0.482587	
mm_12044.1	chr2	59160251	59160451	+	1	NA	NA	NA	-499	NM_026361	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.020000	0.477612	
mm_149090.1	chr19	8926825	8927025	+	1	NA	NA	NA	2431	NM_009073	19881	Mm.426094	NM_009073	ENSMUSG00000071648	Rom1	M101156|Rgsc1156|Rom-1|Rosp1|Tspan23	rod outer segment membrane protein 1	protein-coding	0.000000	0.562189	-7(TTTTTTAAAGAC,+,0.00)
mm_3649.1	chr1	153076324	153076524	+	1	NA	NA	NA	110023	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.010000	0.562189	
mm_55788.1	chr6	82688355	82688555	-	1	NA	NA	NA	-35590	NM_025882	66979	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	0.005000	0.512438	
mm_21334.1	chr2	157101678	157101878	-	1	NA	NA	NA	14723	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.045000	0.487562	
mm_76112.1	chr8	80739219	80739419	-	1	NA	NA	NA	140	NM_053124	93762	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.130000	0.726368	
mm_76257.1	chr8	83740330	83740530	-	1	NA	NA	NA	881	NM_001163029	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.025000	0.562189	
mm_160233.1	chr7	102714281	102714481	-	1	NA	NA	NA	30	NM_147073	18332	Mm.222837	NM_147073	ENSMUSG00000066273	Olfr33	MOR11-2|MTPCR33|ORL181	olfactory receptor 33	protein-coding	0.000000	0.452736	
mm_15394.1	chr2	156721223	156721423	+	1	NA	NA	NA	44	NM_001042487	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.135000	0.731343	
mm_149460.1	chr19	11519723	11519923	+	1	NA	NA	NA	1264	NM_027209	69774	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	0.000000	0.432836	
mm_5335.1	chr1	23922281	23922481	-	1	NA	NA	NA	0	NM_028534	98366	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	0.180000	0.825871	
mm_36202.1	chr4	62360374	62360574	-	1	NA	NA	NA	74	NM_001045528	338355	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.090000	0.626866	
mm_17109.1	chr2	24349497	24349697	-	1	NA	NA	NA	4226	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.020000	0.537313	-3(GACTATAAGGGG,-,0.00)
mm_56814.1	chr6	116673680	116673880	-	1	NA	NA	NA	56	NM_178045	213391	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.055000	0.616915	
mm_95121.1	chr11	34078836	34079036	+	1	NA	NA	NA	31735	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.015000	0.502488	
mm_106454.1	chr11	120017167	120017367	-	1	NA	NA	NA	-2405	NR_029767	723844		NR_029767	ENSMUSG00000065600	Mir338	Mirn338|mir-338|mmu-mir-338	microRNA 338	ncRNA	0.020000	0.601990	
mm_13652.1	chr2	114054540	114054740	+	1	NA	NA	NA	244	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.030000	0.477612	
mm_47792.1	chr5	132258943	132259143	-	1	NA	NA	NA	283300	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.040000	0.487562	
mm_150643.1	chr19	41848696	41848896	+	1	NA	NA	NA	-664	NM_177603	212398	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	0.040000	0.378109	
mm_129635.1	chr15	80239779	80239979	-	1	NA	NA	NA	5799	NM_178719	239555	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.000000	0.512438	
mm_112649.1	chr13	16018009	16018209	+	1	NA	NA	NA	6258	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.517413	
mm_96566.1	chr11	69027006	69027206	+	1	NA	NA	NA	11195	NM_001013256	68964	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	0.005000	0.427861	
mm_163850.1	chr14	19418162	19418362	-	1	NA	NA	NA	184325	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.373134	
mm_45875.1	chr5	88327944	88328144	-	1	NA	NA	NA	10732	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.015000	0.422886	
mm_107295.1	chr12	30584382	30584582	+	1	NA	NA	NA	39	NM_172049	211986	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	0.100000	0.597015	
mm_95101.1	chr11	34047195	34047395	+	1	NA	NA	NA	94	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.015000	0.542289	
mm_101069.1	chr11	11462161	11462361	-	1	NA	NA	NA	158	NM_015785	53604	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	0.135000	0.726368	
mm_169009.1	chr13	107121603	107121803	+	1	NA	NA	NA	99133	NR_015471	100040322	Mm.133867	NR_015471		3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.055000	0.557214	
mm_159773.1	chr5	101664855	101665055	-	1	NA	NA	NA	-244	NM_144955	18096	Mm.193072	NM_144955	ENSMUSG00000035187	Nkx6-1	NKX6A|Nkx6.1	NK6 homeobox 1	protein-coding	0.095000	0.621891	
mm_156361.1	chrX	139481731	139481931	+	1	NA	NA	NA	1464	NM_001346522	102871	Mm.26565	NM_175326	ENSMUSG00000042498	D330045A20Rik	AI132325	RIKEN cDNA D330045A20 gene	protein-coding	0.010000	0.343284	
mm_67938.1	chr7	100121337	100121537	-	1	NA	NA	NA	63	NM_133692	67967	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0.095000	0.636816	
mm_46518.1	chr5	105293983	105294183	-	1	NA	NA	NA	-384	NM_194336	100702	Mm.491210	NM_194336	ENSMUSG00000079362	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	0.005000	0.427861	
mm_76166.1	chr8	82380174	82380374	-	1	NA	NA	NA	22312	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.005000	0.333333	
mm_84571.1	chr9	68972244	68972444	-	1	NA	NA	NA	206998	NR_033299	320440	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.015000	0.482587	
mm_41931.1	chr5	105700646	105700846	+	1	NA	NA	NA	-64	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.105000	0.736318	
mm_26075.1	chr3	136670335	136670535	+	1	NA	NA	NA	369	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.125000	0.746269	
mm_125825.1	chr15	74957122	74957322	+	1	NA	NA	NA	2116	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.010000	0.422886	
mm_43307.1	chr5	134703460	134703660	+	1	NA	NA	NA	-14970	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.005000	0.577114	
mm_112750.1	chr13	19341852	19342052	+	1	NA	NA	NA	53861	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.393035	
mm_32876.1	chr4	118568943	118569143	+	1	NA	NA	NA	-25317	NM_172383	230678	Mm.23639	NM_172383	ENSMUSG00000050854	Tmem125	6330530A05Rik|AV223516	transmembrane protein 125	protein-coding	0.035000	0.572139	
mm_166331.1	chr5	114003616	114003816	+	1	NA	NA	NA	-19	NM_010018	13142	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	0.010000	0.601990	
mm_73622.1	chr8	110444386	110444586	+	1	NA	NA	NA	57870	NR_105058	100861869	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.010000	0.582090	
mm_27132.1	chr3	32365515	32365715	-	1	NA	NA	NA	50	NM_009517	22401	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0.145000	0.746269	
mm_105728.1	chr11	109102629	109102829	-	1	NA	NA	NA	41640	NR_037978	268498	Mm.227970	NM_001085512	ENSMUSG00000078605	E030025P04Rik	Gm664	RIKEN cDNA E030025P04 gene	ncRNA	0.015000	0.442786	
mm_128461.1	chr15	50804043	50804243	-	1	NA	NA	NA	84906	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.258706	-7(TTTTTTAAAGCA,+,0.00)
mm_87246.1	chr10	41100868	41101068	+	1	NA	NA	NA	-29384	NM_199058	140741	Mm.290693	NM_199058	ENSMUSG00000046922	Gpr6	AI852874|Gm233	G protein-coupled receptor 6	protein-coding	0.010000	0.462687	
mm_12134.1	chr2	61660876	61661076	+	1	NA	NA	NA	-50718	NM_021526	59029	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0.010000	0.482587	12(CCCCCTTAAAGC,-,0.00)
mm_79917.1	chr9	65546403	65546603	+	1	NA	NA	NA	33584	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.015000	0.502488	
mm_30988.1	chr4	35226111	35226311	+	1	NA	NA	NA	-331	NM_001081343	73205	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585	RIKEN cDNA 3110043O21 gene	protein-coding	0.070000	0.582090	
mm_44536.1	chr5	24540281	24540481	-	1	NA	NA	NA	76	NM_080444	117590	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	0.015000	0.572139	
mm_37119.1	chr4	116651469	116651669	-	1	NA	NA	NA	105	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.060000	0.621891	
mm_11365.1	chr2	30981860	30982060	+	1	NA	NA	NA	-19	NM_144885	227707	Mm.235238	NM_144885	ENSMUSG00000026851	BC005624	-	cDNA sequence BC005624	protein-coding	0.085000	0.646766	
mm_105191.1	chr11	102026790	102026990	-	1	NA	NA	NA	65	NM_007863	13384	Mm.20449	NM_007863	ENSMUSG00000052373	Mpp3	6430514B01|Dlgh3	membrane protein, palmitoylated 3 (MAGUK p55 subfamily member 3)	protein-coding	0.140000	0.771144	
mm_49068.1	chr6	5511062	5511262	+	1	NA	NA	NA	-14884	NM_013743	27273	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.020000	0.477612	52(ACCTAGAAAAGG,-,0.00)
mm_38476.1	chr4	140699547	140699747	-	1	NA	NA	NA	-1826	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.030000	0.527363	
mm_38715.1	chr4	145227455	145227655	-	1	NA	NA	NA	19315	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.020000	0.527363	
mm_36600.1	chr4	88910471	88910671	-	1	NA	NA	NA	91	NR_029747	723895		NR_029747	ENSMUSG00000065408	Mir31	Mirn31|miR-31|mmu-mir-31	microRNA 31	ncRNA	0.015000	0.517413	
mm_145419.1	chr18	58555968	58556168	+	1	NA	NA	NA	-172	NM_001081072	225579	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0.020000	0.572139	
mm_25956.1	chr3	132120025	132120225	+	1	NA	NA	NA	34833	NM_020265	56811	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.000000	0.358209	
mm_78495.1	chr9	32726648	32726848	+	1	NA	NA	NA	30706	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.010000	0.527363	
mm_52112.1	chr6	97904560	97904760	+	1	NA	NA	NA	-25157	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.452736	
mm_163000.1	chr11	32103012	32103212	-	1	NA	NA	NA	-1884	NR_130637	104692	Mm.414035	NR_130637	ENSMUSG00000086386	Gm12108	BB052462|OTTMUSG00000005365	predicted gene 12108	ncRNA	0.050000	0.537313	
mm_130518.1	chr15	98871885	98872085	-	1	NA	NA	NA	-780	NM_001033276	381022	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.085000	0.676617	
mm_51763.1	chr6	87887852	87888052	+	1	NA	NA	NA	12	NM_017477	54161	Mm.258785	NM_017477	ENSMUSG00000030058	Copg1	AU019265|BC056168|Copg|D6Ertd71e|D6Wsu16e	coatomer protein complex, subunit gamma 1	protein-coding	0.080000	0.601990	
mm_77032.1	chr8	109340766	109340966	-	1	NA	NA	NA	42	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo	0.075000	0.606965	
mm_86626.1	chr10	13966925	13967125	+	1	NA	NA	NA	646	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.125000	0.726368	
mm_15226.1	chr2	154548759	154548959	+	1	NA	NA	NA	-45	NM_029305	75480	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0.010000	0.587065	
mm_93966.1	chr10	127288785	127288985	-	1	NA	NA	NA	133	NM_001347171	110962	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.160000	0.781095	
mm_79012.1	chr9	45597493	45597693	+	1	NA	NA	NA	-166361	NR_040732	74602	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.000000	0.492537	
mm_39819.1	chr5	30778010	30778210	+	1	NA	NA	NA	-36531	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.035000	0.552239	
mm_173001.1	chrM	75	275	+	1	NA	NA	NA	NA	NA									0.015000	0.373134	
mm_146477.1	chr18	89197229	89197429	+	1	NA	NA	NA	-98	NM_178687	225825	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.015000	0.338308	
mm_95419.1	chr11	50130932	50131132	+	1	NA	NA	NA	-328	NM_001290759	76795	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.025000	0.512438	
mm_132843.1	chr16	46001938	46002138	+	1	NA	NA	NA	8375	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.010000	0.398010	
mm_4534.1	chr1	175766969	175767169	+	1	NA	NA	NA	68476	NM_029453	75820	Mm.50361	NM_029453	ENSMUSG00000026523	Wdr64	4930415O10Rik|4930511H01Rik	WD repeat domain 64	protein-coding	0.020000	0.462687	
mm_49524.1	chr6	29985231	29985431	+	1	NA	NA	NA	2	NR_040263	76419	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	0.090000	0.636816	
mm_139331.1	chr17	49087022	49087222	+	1	NA	NA	NA	26411	NR_038141	69311	Mm.46140	NR_038141	ENSMUSG00000101012	1700008K24Rik	-	RIKEN cDNA 1700008K24 gene	ncRNA	0.010000	0.402985	
mm_98669.1	chr11	96282644	96282844	+	1	NA	NA	NA	839	NM_010461	15416	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	0.045000	0.537313	
mm_159108.1	chr2	39005025	39005225	-	1	NA	NA	NA	6	NM_025592	66489	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0.120000	0.681592	
mm_89560.1	chr10	95319177	95319377	+	1	NA	NA	NA	4432	NM_001330138	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.040000	0.507463	-76(ATCTAGAAAAGG,-,0.00)
mm_2409.1	chr1	93825141	93825341	+	1	NA	NA	NA	1	NM_001310767	98314	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	0.060000	0.641791	
mm_7436.1	chr1	119997066	119997266	-	1	NA	NA	NA	-1956	NM_001115074	226356	Mm.297290	NM_001115074	ENSMUSG00000036962	Cfap221	Gm101|Pcdp1	cilia and flagella associated protein 221	protein-coding	0.075000	0.592040	
mm_58157.1	chr6	142472727	142472927	-	1	NA	NA	NA	282	NM_145572	232493	Mm.275975	NM_145572	ENSMUSG00000030244	Gys2	BC021322|LGS	glycogen synthase 2	protein-coding	0.015000	0.562189	
mm_171760.1	chr5	105139452	105139652	-	1	NA	NA	NA	0	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.487562	-33(GCACATAAAAGA,-,0.00)
mm_27062.1	chr3	27710281	27710481	-	1	NA	NA	NA	58	NM_173182	72007	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.140000	0.815920	
mm_124877.1	chr15	10223766	10223966	+	1	NA	NA	NA	-40	NM_001253781	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.000000	0.492537	
mm_142978.1	chr17	56218500	56218700	-	1	NA	NA	NA	289	NM_172624	224897	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	0.185000	0.791045	
mm_2537.1	chr1	107399554	107399754	+	1	NA	NA	NA	-23035	NM_027548	116872	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	0.010000	0.557214	
mm_62532.1	chr7	102242517	102242717	+	1	NA	NA	NA	7501	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.020000	0.467662	
mm_172971.1	chr9	90114523	90114723	-	1	NA	NA	NA	197	NM_001039147	21761	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.080000	0.636816	
mm_34925.1	chr4	155812412	155812612	+	1	NA	NA	NA	23	NM_207678	56036	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	0.155000	0.756219	
mm_136849.1	chr17	12789081	12789281	+	1	NA	NA	NA	-19475	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.005000	0.383085	-48(CTCTATATATGA,-,0.00)
mm_56192.1	chr6	88726690	88726890	-	1	NA	NA	NA	2086	NM_001166251	23945	Mm.272197	NM_011844	ENSMUSG00000033174	Mgll	AA589436|Magl|Mgl	monoglyceride lipase	protein-coding	0.020000	0.532338	
mm_98936.1	chr11	98358330	98358530	+	1	NA	NA	NA	62	NM_021547	59045	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	0.095000	0.726368	
mm_39647.1	chr5	24645397	24645597	+	1	NA	NA	NA	44	NR_003953	72252	Mm.87446	NR_003953	ENSMUSG00000038165	1700022A21Rik	-	glycerol-3-phosphate dehydrogenase 1-like pseudogene	pseudo	0.005000	0.487562	-27(GACTTTAAAGGG,-,0.00)
mm_140174.1	chr17	80479312	80479512	+	1	NA	NA	NA	1041	NM_009231	20662	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	son of sevenless homolog 1 (Drosophila)	protein-coding	0.035000	0.532338	
mm_44749.1	chr5	31254496	31254696	-	1	NA	NA	NA	2890	NM_027221	69815	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	0.015000	0.522388	-85(CCTTTTATGAAG,+,0.00)
mm_22083.1	chr2	168766551	168766751	-	1	NA	NA	NA	550	NM_201395	99377	Mm.434054	NM_175303	ENSMUSG00000027547	Sall4	5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20	sal-like 4 (Drosophila)	protein-coding	0.025000	0.537313	
mm_22455.1	chr3	3187962	3188162	+	1	NA	NA	NA	-319968	NM_013920	30942	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.000000	0.412935	
mm_66790.1	chr7	47091329	47091529	-	1	NA	NA	NA	-8205	NR_106023	102465639		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.025000	0.616915	
mm_47656.1	chr5	125392905	125393105	-	1	NA	NA	NA	-2988	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.015000	0.502488	
mm_107379.1	chr12	32954203	32954403	+	1	NA	NA	NA	117	NM_198710	19027	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	0.115000	0.676617	
mm_8255.1	chr1	138847293	138847493	-	1	NA	NA	NA	186	NM_010714	16876	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0.065000	0.621891	
mm_163739.1	chr13	119699841	119700041	+	1	NA	NA	NA	9590	NM_001291439	208715	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	0.025000	0.442786	
mm_166542.1	chr6	34289809	34290009	-	1	NA	NA	NA	27534	NR_037965	626009	Mm.451	NR_028277		Gm6644	Akr1b3p|EG626009	Akr1b3 pseudogene	pseudo	0.000000	0.393035	-53(CTATATAAAAAG,-,0.00)
mm_45583.1	chr5	74065569	74065769	-	1	NA	NA	NA	2742	NM_177561	69727	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.015000	0.507463	
mm_147492.1	chr18	47368768	47368968	-	1	NA	NA	NA	0	NM_018744	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.125000	0.716418	
mm_94617.1	chr11	16758814	16759014	+	1	NA	NA	NA	6711	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.005000	0.283582	53(ATGCTTAAAAGC,-,0.00)
mm_90338.1	chr10	127084636	127084836	+	1	NA	NA	NA	5829	NM_001033263	216439	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.010000	0.457711	
mm_66421.1	chr7	44534183	44534383	-	1	NA	NA	NA	-2212	NM_019866	272382	Mm.8012	NM_019866	ENSMUSG00000008193	Spib	Spi-B	Spi-B transcription factor (Spi-1/PU.1 related)	protein-coding	0.010000	0.606965	
mm_3261.1	chr1	136259573	136259773	+	1	NA	NA	NA	1200	NM_001101516	383563	Mm.40367	NM_001101516	ENSMUSG00000052759	Gpr25	Gm1300	G protein-coupled receptor 25	protein-coding	0.025000	0.532338	
mm_24589.1	chr3	93444957	93445157	+	1	NA	NA	NA	2727	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.040000	0.601990	
mm_159454.1	chr3	146893968	146894168	+	1	NA	NA	NA	41701	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.020000	0.447761	
mm_36868.1	chr4	107064624	107064824	-	1	NA	NA	NA	2142	NM_025500	56280	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0.010000	0.497512	
mm_12956.1	chr2	90239390	90239590	+	1	NA	NA	NA	13496	NM_146984	406186	Mm.377948	NM_146984	ENSMUSG00000075063	Olfr142	K20|MOR227-2	olfactory receptor 142	protein-coding	0.015000	0.402985	
mm_12769.1	chr2	79311674	79311874	+	1	NA	NA	NA	56348	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.000000	0.298507	-55(GCCTTTAAAAAT,-,0.00),-54(CCTTTAAAAATG,+,0.00)
mm_56988.1	chr6	120822570	120822770	-	1	NA	NA	NA	15	NM_007510	11973	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|E2|P31|Vma4	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	0.060000	0.587065	-63(GGGTTTATAAAG,-,0.00),-61(GTTTATAAAGTA,+,0.00)
mm_45846.1	chr5	87699299	87699499	-	1	NA	NA	NA	26	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.328358	
mm_96802.1	chr11	69981366	69981566	+	1	NA	NA	NA	-231	NM_018740	54351	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.105000	0.736318	
mm_126294.1	chr15	79347537	79347737	+	1	NA	NA	NA	117	NM_010755	17133	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.130000	0.681592	
mm_60717.1	chr7	45324948	45325148	+	1	NA	NA	NA	90	NR_110499	100040970	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	ENSMUSG00000046721|Gm9811	ribosomal protein L14, pseudogene 1	pseudo	0.045000	0.567164	
mm_151760.1	chr19	5118252	5118452	-	1	NA	NA	NA	56	NR_045528	16594	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	0.110000	0.731343	-35(GCCCCTTTAAGG,-,0.00),-34(CCCCTTTAAGGC,-,0.00),-33(CCCTTTAAGGCA,+,0.00),-32(CCTTTAAGGCAG,+,0.00),39(CCTTTAAGGCGG,+,0.00)
mm_147611.1	chr18	56975255	56975455	-	1	NA	NA	NA	24	NM_029909	77422	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	0.145000	0.761194	
mm_97209.1	chr11	75619430	75619630	+	1	NA	NA	NA	-11490	NM_008916	19062	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.000000	0.432836	
mm_163826.1	chr14	19417266	19417466	+	1	NA	NA	NA	185221	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.030000	0.328358	
mm_57564.1	chr6	127125710	127125910	-	1	NA	NA	NA	-16258	NM_177003	319801	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	0.015000	0.373134	
mm_18667.1	chr2	70825404	70825604	-	1	NA	NA	NA	-24	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.195000	0.865672	
mm_75815.1	chr8	70331842	70332042	-	1	NA	NA	NA	2177	NM_008107	14559	Mm.258280	NM_008107	ENSMUSG00000087408	Gdf1	AI385651|Gdf-1	growth differentiation factor 1	protein-coding	0.010000	0.338308	
mm_4586.1	chr1	178319057	178319257	+	1	NA	NA	NA	4	NM_025511	66359	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0.100000	0.721393	
mm_57057.1	chr6	122486292	122486492	-	1	NA	NA	NA	-87	NM_027664	108653	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	0.145000	0.731343	
mm_170668.1	chr2	118554895	118555095	+	1	NA	NA	NA	-5309	NM_138313	171543	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.085000	0.616915	-37(CTCCTTAAAGGG,-,0.00),-35(CCTTAAAGGGGA,+,0.00)
mm_76339.1	chr8	84721606	84721806	-	1	NA	NA	NA	20249	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.055000	0.611940	
mm_118650.1	chr14	21741486	21741686	+	1	NA	NA	NA	1293	NM_013849	27389	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.010000	0.517413	
mm_89671.1	chr10	97506565	97506765	+	1	NA	NA	NA	24334	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.020000	0.437811	
mm_138902.1	chr17	43568625	43568825	+	1	NA	NA	NA	274	NM_013737	27226	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.030000	0.552239	
mm_156107.1	chrX	114284553	114284753	+	1	NA	NA	NA	-189680	NM_001290478	237010	Mm.132583	NM_172781	ENSMUSG00000025597	Klhl4	B130014A11|C130018J01Rik	kelch-like 4	protein-coding	0.005000	0.447761	
mm_42568.1	chr5	117160365	117160565	+	1	NA	NA	NA	26877	NM_183306	330177	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.015000	0.427861	
mm_132888.1	chr16	48842520	48842720	+	1	NA	NA	NA	68	NM_020509	57262	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0.010000	0.472637	-44(GCGTATAAAAGC,-,0.00)
mm_87303.1	chr10	42535008	42535208	+	1	NA	NA	NA	33054	NM_017472	54198	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.025000	0.507463	
mm_166250.1	chr5	78703998	78704198	+	1	NA	NA	NA	811806	NR_035474	100316701		NR_035474	ENSMUSG00000089570	Mir669m-1	mmu-mir-669m-1	microRNA 669m-1	ncRNA	0.000000	0.378109	
mm_31879.1	chr4	81442335	81442535	+	1	NA	NA	NA	380	NM_010820	17475	Mm.153039	NM_010820	ENSMUSG00000028402	Mpdz	AI225843|B930003D11Rik|MUPP1	multiple PDZ domain protein	protein-coding	0.080000	0.716418	
mm_129101.1	chr15	76013525	76013725	-	1	NA	NA	NA	711	NM_134087	105732	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	0.035000	0.626866	-35(GTCTCTATAAAC,-,0.00)
mm_86568.1	chr10	11343347	11343547	+	1	NA	NA	NA	2	NM_010146	13853	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	0.175000	0.781095	
mm_27882.1	chr3	79173158	79173358	-	1	NA	NA	NA	-27383	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.045000	0.507463	
mm_122035.1	chr14	29968099	29968299	-	1	NA	NA	NA	-181	NM_019979	80795	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	0.065000	0.582090	
mm_19958.1	chr2	117342822	117343022	-	1	NA	NA	NA	-45	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.095000	0.626866	
mm_144152.1	chr18	5591785	5591985	+	1	NA	NA	NA	25	NM_011546	21417	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.070000	0.671642	0(GCATTTAGACAC,+,0.00)
mm_123207.1	chr14	59365376	59365576	-	1	NA	NA	NA	14	NM_199015	219132	Mm.479285	NM_199015	ENSMUSG00000068245	Phf11d	D14Ertd668e|Phf11|Phf11l	PHD finger protein 11D	protein-coding	0.030000	0.482587	
mm_17594.1	chr2	30719928	30720128	-	1	NA	NA	NA	-1182	NR_037272	100526499		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.015000	0.616915	
mm_132686.1	chr16	43072128	43072328	+	1	NA	NA	NA	116648	NR_002445	170658	Mm.375824	NR_002445		BC002163	-	NADH dehydrogenase Fe-S protein 5 pseudogene	pseudo	0.010000	0.427861	
mm_163743.1	chr13	119728317	119728517	-	1	NA	NA	NA	27465	NM_175538	245269	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0.015000	0.452736	
mm_17736.1	chr2	32694003	32694203	-	1	NA	NA	NA	72	NM_010236	14287	Mm.3830	NM_010236	ENSMUSG00000009566	Fpgs	AA408187	folylpolyglutamyl synthetase	protein-coding	0.130000	0.716418	
mm_136160.1	chr16	88506861	88507061	-	1	NA	NA	NA	17	NM_181490	239931	Mm.126860	NM_181490	ENSMUSG00000055811	Cldn17	-	claudin 17	protein-coding	0.025000	0.462687	
mm_47441.1	chr5	123182618	123182818	-	1	NA	NA	NA	-32	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.030000	0.611940	
mm_137344.1	chr17	25139833	25140033	+	1	NA	NA	NA	3302	NM_001317404	26373	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.005000	0.417910	
mm_108851.1	chr12	98420094	98420294	+	1	NA	NA	NA	-103650	NR_136759	105245437	Mm.446375	NR_136759		Gm40893	-	predicted gene, 40893	ncRNA	0.025000	0.507463	
mm_38948.1	chr4	150556410	150556610	-	1	NA	NA	NA	95664	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.015000	0.472637	
mm_55999.1	chr6	86472070	86472270	-	1	NA	NA	NA	8660	NR_131125	320486	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	0.075000	0.592040	
mm_104807.1	chr11	98775249	98775449	-	1	NA	NA	NA	28	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.075000	0.651741	
mm_34441.1	chr4	147940790	147940990	+	1	NA	NA	NA	-5	NM_029841	77034	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	0.105000	0.676617	
mm_170767.1	chr2	161108998	161109198	-	1	NA	NA	NA	-12	NR_126509	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0.040000	0.547264	
mm_23785.1	chr3	79345243	79345443	+	1	NA	NA	NA	-33	NM_001142953	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.030000	0.557214	
mm_32273.1	chr4	102698188	102698388	+	1	NA	NA	NA	-61847	NM_001285860	73094	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0.015000	0.467662	
mm_18709.1	chr2	72074983	72075183	-	1	NA	NA	NA	20466	NM_001204166	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.025000	0.542289	
mm_137857.1	chr17	31114431	31114631	+	1	NA	NA	NA	15080	NM_011575	21786	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.035000	0.472637	
mm_73365.1	chr8	105604931	105605131	+	1	NA	NA	NA	-198	NM_001081241	75687	Mm.41261	NM_001081241	ENSMUSG00000038604	Fam65a	2310066E14Rik|AI837433	family with sequence similarity 65, member A	protein-coding	0.030000	0.582090	
mm_48441.1	chr5	140635926	140636126	-	1	NA	NA	NA	13005	NM_001308040	78339	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.025000	0.601990	
mm_81974.1	chr9	121297468	121297668	+	1	NA	NA	NA	-20396	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.180000	0.850746	
mm_101889.1	chr11	48997022	48997222	-	1	NA	NA	NA	-4876	NM_011579	21822	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	0.005000	0.497512	
mm_57447.1	chr6	125009519	125009719	-	1	NA	NA	NA	-50	NM_175557	269800	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	0.080000	0.711443	
mm_33678.1	chr4	133251271	133251471	+	1	NA	NA	NA	10553	NM_016693	53608	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	0.080000	0.636816	
mm_148357.1	chr18	84951357	84951557	-	1	NA	NA	NA	67	NM_025969	67105	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	tranlocase of inner mitochondrial membrane 21	protein-coding	0.045000	0.427861	
mm_126305.1	chr15	79519711	79519911	+	1	NA	NA	NA	3403	NM_134090	105785	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	0.010000	0.492537	
mm_137420.1	chr17	26159573	26159773	+	1	NA	NA	NA	20987	NM_001159598	12005	Mm.23684	NM_009733	ENSMUSG00000024182	Axin1	AI316800|Axin|Fu|Kb|Ki|fused|kinky|knobbly	axin 1	protein-coding	0.000000	0.373134	
mm_99347.1	chr11	101582174	101582374	+	1	NA	NA	NA	32	NM_144830	217203	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.065000	0.606965	
mm_57941.1	chr6	134792375	134792575	-	1	NA	NA	NA	153	NM_130447	70686	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	0.065000	0.562189	
mm_23143.1	chr3	38901907	38902107	+	1	NA	NA	NA	15067	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.005000	0.358209	
mm_23890.1	chr3	83031301	83031501	+	1	NA	NA	NA	5248	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.015000	0.522388	
mm_50206.1	chr6	42247340	42247540	+	1	NA	NA	NA	1505	NM_029555	76263	Mm.267014	NM_029555	ENSMUSG00000029864	Gstk1	0610025I19Rik|AW260476|DsbA-L	glutathione S-transferase kappa 1	protein-coding	0.025000	0.532338	
mm_162463.1	chr1	130629480	130629680	-	1	NA	NA	NA	26	NM_009581	22789	Mm.4644	NM_009581	ENSMUSG00000042554	Zp3r	AV264399|SP56	zona pellucida 3 receptor	protein-coding	0.010000	0.432836	
mm_53049.1	chr6	124739108	124739308	+	1	NA	NA	NA	-499	NM_001077705	15170	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.020000	0.542289	
mm_99991.1	chr11	114727350	114727550	+	1	NA	NA	NA	38	NM_001034878	432611	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728	dynein, axonemal, intermediate chain 2	protein-coding	0.070000	0.636816	
mm_88361.1	chr10	75936311	75936511	+	1	NA	NA	NA	838	NM_175329	103172	Mm.333849	NM_175329	ENSMUSG00000049422	Chchd10	1620401E04Rik|AI267078|Ndg2	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding	0.040000	0.597015	
mm_30.1	chr1	6214733	6214933	+	1	NA	NA	NA	171	NM_009826	12421	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	0.150000	0.771144	
mm_129065.1	chr15	75616324	75616524	-	1	NA	NA	NA	-260	NM_001044718	22701	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0.085000	0.671642	
mm_15895.1	chr2	164947645	164947845	+	1	NA	NA	NA	-474	NM_013599	17395	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.005000	0.592040	-31(CCTCAAAGAGCC,+,0.00)
mm_128200.1	chr15	35913092	35913292	-	1	NA	NA	NA	25054	NM_053071	12864	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0.005000	0.507463	
mm_13127.1	chr2	91730062	91730262	+	1	NA	NA	NA	24	NM_001080754	228361	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	0.080000	0.606965	
mm_49333.1	chr6	21233346	21233546	+	1	NA	NA	NA	17337	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.005000	0.467662	
mm_4637.1	chr1	179845958	179846158	+	1	NA	NA	NA	-42043	NM_026375	226747	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.025000	0.582090	
mm_86544.1	chr10	9336569	9336769	+	1	NA	NA	NA	338539	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0.005000	0.437811	
mm_4136.1	chr1	170644447	170644647	+	1	NA	NA	NA	15	NM_177068	320078	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.080000	0.701493	
mm_113898.1	chr13	49196930	49197130	+	1	NA	NA	NA	9483	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.025000	0.577114	
mm_83034.1	chr9	37255556	37255756	-	1	NA	NA	NA	82	NM_020258	56857	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.015000	0.482587	
mm_29617.1	chr3	121283000	121283200	-	1	NA	NA	NA	-8717	NM_024178	66789	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0.005000	0.502488	39(GGCCTTATAGAG,-,0.00),41(CCTTATAGAGTC,+,0.00)
mm_10109.1	chr2	3686239	3686439	+	1	NA	NA	NA	-27119	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.040000	0.616915	-34(CTCCTTAAAAAA,-,0.00)
mm_37034.1	chr4	115486796	115486996	-	1	NA	NA	NA	9245	NM_007822	13119	Mm.250901	NM_007822	ENSMUSG00000028715	Cyp4a14	AI314743	cytochrome P450, family 4, subfamily a, polypeptide 14	protein-coding	0.005000	0.487562	
mm_24886.1	chr3	96104722	96104922	+	1	NA	NA	NA	295	NM_001025614	229603	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0.100000	0.721393	
mm_49894.1	chr6	38918913	38919113	+	1	NA	NA	NA	27	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.000000	0.452736	-43(CTCTTTATAAAG,-,0.00),-41(CTTTATAAAGAA,+,0.00),70(TCCTATAAGGGC,+,0.00)
mm_76105.1	chr8	80395059	80395259	-	1	NA	NA	NA	-98886	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.020000	0.432836	
mm_57594.1	chr6	127769342	127769542	-	1	NA	NA	NA	-283	NM_201371	381813	Mm.39750	NM_201371	ENSMUSG00000030350	Prmt8	Hrmt1l3|Hrmt1l4	protein arginine N-methyltransferase 8	protein-coding	0.080000	0.676617	
mm_167192.1	chr7	142577152	142577352	+	1	NA	NA	NA	-105	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.005000	0.532338	
mm_99786.1	chr11	107353041	107353241	+	1	NA	NA	NA	117579	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.010000	0.557214	
mm_69957.1	chr7	142375962	142376162	-	1	NA	NA	NA	-2316	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.005000	0.597015	
mm_17441.1	chr2	28325377	28325577	-	1	NA	NA	NA	119788	NM_019498	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.020000	0.547264	
mm_103899.1	chr11	83575376	83575576	-	1	NA	NA	NA	3160	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.010000	0.447761	
mm_7793.1	chr1	131514131	131514331	-	1	NA	NA	NA	13130	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.005000	0.472637	
mm_117649.1	chr13	92794891	92795091	-	1	NA	NA	NA	-173	NM_011582	21828	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	0.050000	0.656716	
mm_9699.1	chr1	178406327	178406527	-	1	NA	NA	NA	546	NM_026626	68226	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.080000	0.716418	
mm_152810.1	chr19	23058079	23058279	-	1	NA	NA	NA	-83047	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.015000	0.462687	-41(CCCCATAAGAGG,-,0.00)
mm_89065.1	chr10	82897150	82897350	+	1	NA	NA	NA	30624	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.015000	0.577114	
mm_26537.1	chr3	146122132	146122332	+	1	NA	NA	NA	441	NM_134160	171166	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	0.010000	0.383085	9(CACTATTTAGGC,-,0.00)
mm_135661.1	chr16	52406630	52406830	-	1	NA	NA	NA	46351	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.228856	
mm_106648.1	chr11	121063210	121063410	-	1	NA	NA	NA	259	NM_026907	58210	Mm.116986	NM_026907	ENSMUSG00000039364	Sectm1b	1810003C24Rik|K12|Sectm1	secreted and transmembrane 1B	protein-coding	0.005000	0.532338	
mm_97324.1	chr11	76945608	76945808	+	1	NA	NA	NA	52	NM_178645	104184	Mm.399785	NM_178645	ENSMUSG00000020840	Blmh	AI035728|Bh|Bmh	bleomycin hydrolase	protein-coding	0.095000	0.691542	
mm_86185.1	chr9	119322335	119322535	-	1	NA	NA	NA	-8	NM_133985	108737	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	0.100000	0.696517	
mm_43545.1	chr5	137553465	137553665	+	1	NA	NA	NA	10	NM_031404	83766	Mm.31646	NM_031404	ENSMUSG00000029712	Actl6b	Actl6|ArpNa|Baf53b	actin-like 6B	protein-coding	0.130000	0.711443	
mm_166916.1	chr7	30423246	30423446	+	1	NA	NA	NA	42	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.045000	0.557214	
mm_71644.1	chr8	57651668	57651868	+	1	NA	NA	NA	15	NR_040698	100502619	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0.085000	0.636816	
mm_30511.1	chr3	158036455	158036655	-	1	NA	NA	NA	84	NM_001093752	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.090000	0.651741	
mm_90701.1	chr10	130354371	130354571	+	1	NA	NA	NA	31619	NM_183264	67596	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	0.010000	0.313433	
mm_55006.1	chr6	48836214	48836414	-	1	NA	NA	NA	4674	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.015000	0.552239	
mm_121981.1	chr14	25857121	25857321	-	1	NA	NA	NA	15066	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.000000	0.527363	
mm_4106.1	chr1	167598300	167598500	+	1	NA	NA	NA	38	NM_009107	20183	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0.085000	0.641791	
mm_66789.1	chr7	47091315	47091515	-	1	NA	NA	NA	-8191	NR_106023	102465639		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.025000	0.611940	
mm_139681.1	chr17	57415061	57415261	+	1	NA	NA	NA	56475	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.388060	19(GCTTAAAAAACC,+,0.00)
mm_70832.1	chr8	23153170	23153370	+	1	NA	NA	NA	-1	NM_029002	74561	Mm.290028	NM_029002	ENSMUSG00000063672	Nkx6-3	9130417I07Rik|Nkx6.3	NK6 homeobox 3	protein-coding	0.020000	0.532338	
mm_120454.1	chr14	65969667	65969867	+	1	NA	NA	NA	1284	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.025000	0.547264	
mm_29650.1	chr3	122245217	122245417	-	1	NA	NA	NA	-240	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.085000	0.587065	
mm_152776.1	chr19	21170879	21171079	-	1	NA	NA	NA	66269	NR_126458	75354	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.005000	0.497512	
mm_92642.1	chr10	80348499	80348699	-	1	NA	NA	NA	-151	NR_104340	66548	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0.085000	0.696517	
mm_67874.1	chr7	99182605	99182805	-	1	NA	NA	NA	8	NM_026384	67800	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	0.120000	0.696517	
mm_143669.1	chr17	79895907	79896107	-	1	NA	NA	NA	116	NM_178050	56298	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.125000	0.646766	
mm_86324.1	chr9	123051334	123051534	-	1	NA	NA	NA	16693	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.015000	0.492537	
mm_133150.1	chr16	70314034	70314234	+	1	NA	NA	NA	185	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.135000	0.741294	
mm_109371.1	chr12	109646451	109646651	+	1	NA	NA	NA	-3066	NR_046304	100861570		NR_046304	ENSMUSG00000084549	DQ267100	-	snoRNA DQ267100	snoRNA	0.000000	0.233831	
mm_163759.1	chr13	119791141	119791341	+	1	NA	NA	NA	-119	NM_001302550	72465	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0.105000	0.686567	
mm_67456.1	chr7	80402620	80402820	-	1	NA	NA	NA	92	NM_011046	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.205000	0.860697	
mm_20816.1	chr2	144527407	144527607	-	1	NA	NA	NA	-109	NM_172859	241688	Mm.442156	NM_172859	ENSMUSG00000037259	Dzank1	2810039F03Rik|6330439K17Rik|6430408C01|AI851115|Ankrd64	double zinc ribbon and ankyrin repeat domains 1	protein-coding	0.070000	0.611940	
mm_6373.1	chr1	72537038	72537238	-	1	NA	NA	NA	-574	NM_001045533	381270	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	0.080000	0.671642	
mm_11680.1	chr2	35558370	35558570	+	1	NA	NA	NA	12	NM_001114125	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.045000	0.557214	
mm_105408.1	chr11	103567781	103567981	-	1	NA	NA	NA	46858	NM_001033434	380730	Mm.380214	NM_001033434	ENSMUSG00000034239	Gm884	LRRC37	predicted gene 884	protein-coding	0.000000	0.258706	
mm_117784.1	chr13	97030521	97030721	-	1	NA	NA	NA	3741	NM_025585	66479	Mm.390629	NM_025585	ENSMUSG00000052075	1700029F12Rik	-	RIKEN cDNA 1700029F12 gene	protein-coding	0.005000	0.512438	
mm_160084.1	chr7	13837310	13837510	-	1	NA	NA	NA	0	NM_001111296	20859	Mm.260026	NM_001111296	ENSMUSG00000078798	Sult2a1	ST2A1|Std|Sth1|mSTa1	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 1	protein-coding	0.005000	0.343284	
mm_15037.1	chr2	152756965	152757165	+	1	NA	NA	NA	2892	NM_053091	84682	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit IV isoform 2	protein-coding	0.030000	0.621891	
mm_85595.1	chr9	107338228	107338428	-	1	NA	NA	NA	22	NM_133984	69536	Mm.259467	NM_133984	ENSMUSG00000032579	Hemk1	2310008M14Rik|AW049265	HemK methyltransferase family member 1	protein-coding	0.065000	0.621891	
mm_22071.1	chr2	168741836	168742036	-	1	NA	NA	NA	-136	NM_015731	11981	Mm.330819	NM_015731	ENSMUSG00000027546	Atp9a	IIa	ATPase, class II, type 9A	protein-coding	0.225000	0.885572	
mm_19457.1	chr2	92370951	92371151	-	1	NA	NA	NA	6	NM_001290774	228366	Mm.31158	NM_172670	ENSMUSG00000040434	Large2	5730485C17Rik|AI891893|Gyltl1b|Largel|mKIAA4105	LARGE xylosyl- and glucuronyltransferase 2	protein-coding	0.065000	0.701493	
mm_114713.1	chr13	83575041	83575241	+	1	NA	NA	NA	1534	NM_001347569	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.015000	0.353234	33(AGGTATATAAAG,-,0.00)
mm_28328.1	chr3	89355472	89355672	-	1	NA	NA	NA	-5544	NM_009614	11490	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	0.010000	0.517413	
mm_65258.1	chr7	19887854	19888054	-	1	NA	NA	NA	11	NM_177036	319930	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.025000	0.601990	
mm_44984.1	chr5	37336840	37337040	-	1	NA	NA	NA	-59	NM_021292	59056	Mm.479678	NM_021292	ENSMUSG00000029122	Evc	-	Ellis van Creveld gene syndrome	protein-coding	0.070000	0.651741	
mm_91832.1	chr10	56982063	56982263	-	1	NA	NA	NA	504190	NR_045353	74928	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	0.005000	0.407960	29(GTGTTTTAAAAC,-,0.00)
mm_84463.1	chr9	66592857	66593057	-	1	NA	NA	NA	158	NM_144937	235441	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.105000	0.701493	
mm_41823.1	chr5	104046699	104046899	+	1	NA	NA	NA	-65	NM_028794	74167	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	0.125000	0.696517	
mm_84328.1	chr9	64021832	64022032	-	1	NA	NA	NA	127	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.090000	0.681592	
mm_40393.1	chr5	52787049	52787249	+	1	NA	NA	NA	4094	NM_030185	78796	Mm.266886	NM_030185	ENSMUSG00000029179	Zcchc4	4930449I23Rik	zinc finger, CCHC domain containing 4	protein-coding	0.010000	0.432836	
mm_36983.1	chr4	109665214	109665414	-	1	NA	NA	NA	58	NM_007671	12580	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	protein-coding	0.025000	0.487562	
mm_140813.1	chr17	22864063	22864263	-	1	NA	NA	NA	2971	NM_177358	240041	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	0.010000	0.373134	
mm_114974.1	chr13	97241160	97241360	+	1	NA	NA	NA	155	NM_007930	13803	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.145000	0.766169	
mm_114952.1	chr13	96924558	96924758	+	1	NA	NA	NA	-31	NM_001166065	218476	Mm.483490	NM_001166065	ENSMUSG00000091387	Gcnt4	C2gnt3|Gm279|Gm73	glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)	protein-coding	0.075000	0.616915	
mm_166954.1	chr7	44476252	44476452	+	1	NA	NA	NA	6005	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.457711	
mm_88161.1	chr10	69706148	69706348	+	1	NA	NA	NA	172540	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.030000	0.462687	
mm_87528.1	chr10	53343776	53343976	+	1	NA	NA	NA	6190	NM_001141927	18821	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0.015000	0.432836	
mm_143794.1	chr17	81838407	81838607	-	1	NA	NA	NA	-100120	NM_011406	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.020000	0.427861	
mm_94822.1	chr11	23257360	23257560	+	1	NA	NA	NA	1419	NM_134014	103573	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.055000	0.577114	46(GGGTCTAAATGC,-,0.00)
mm_47486.1	chr5	123879902	123880102	-	1	NA	NA	NA	18	NM_175520	243270	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	0.030000	0.537313	
mm_44890.1	chr5	35094813	35095013	-	1	NA	NA	NA	10784	NM_013587	16976	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.040000	0.567164	
mm_150402.1	chr19	36554684	36554884	+	1	NA	NA	NA	145	NM_172637	226098	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain containing 2	protein-coding	0.165000	0.781095	
mm_138947.1	chr17	44107741	44107941	+	1	NA	NA	NA	-2033	NM_199016	224794	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90|mKIAA0879	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	0.020000	0.432836	
mm_5012.1	chr1	192812939	192813139	+	1	NA	NA	NA	-28666	NR_040468	73455	Mm.414869	NR_040468		1700065J18Rik	-	RIKEN cDNA 1700065J18 gene	ncRNA	0.035000	0.402985	
mm_112834.1	chr13	20825172	20825372	+	1	NA	NA	NA	31159	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.447761	
mm_78027.1	chr9	13766691	13766891	+	1	NA	NA	NA	17610	NR_024025	77116	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.020000	0.532338	
mm_124096.1	chr14	79243520	79243720	-	1	NA	NA	NA	3747	NM_001033215	105590	Mm.486536	NM_001033215	ENSMUSG00000071262	Zfp957	AU017455	zinc finger protein 957	protein-coding	0.020000	0.517413	
mm_162123.1	chrX	70394670	70394870	-	1	NA	NA	NA	-30	NM_001033807	619303	Mm.388146	NM_001033807	ENSMUSG00000073141	4930567H17Rik	-	RIKEN cDNA 4930567H17 gene	protein-coding	0.005000	0.472637	
mm_33607.1	chr4	132581055	132581255	+	1	NA	NA	NA	17088	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.025000	0.537313	
mm_169265.1	chr13	8441617	8441817	-	1	NA	NA	NA	238851	NM_052977	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding	0.030000	0.502488	-28(CTTTAAATACCC,+,0.00)
mm_126541.1	chr15	82022860	82023060	+	1	NA	NA	NA	6591	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.045000	0.572139	
mm_103594.1	chr11	78301374	78301574	-	1	NA	NA	NA	-117	NM_017407	54141	Mm.24250	NM_017407	ENSMUSG00000002055	Spag5	AI874642|D11Bhm180e|Deepest|MAP126|Mastrin|S17	sperm associated antigen 5	protein-coding	0.085000	0.676617	
mm_96345.1	chr11	66956417	66956617	+	1	NA	NA	NA	-121	NR_130645	71576	Mm.340077	NR_130315	ENSMUSG00000085683	9130409J20Rik	-	RIKEN cDNA 9130409J20 gene	ncRNA	0.015000	0.532338	
mm_72417.1	chr8	81871469	81871669	+	1	NA	NA	NA	529007	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.000000	0.402985	
mm_134233.1	chr16	11633074	11633274	-	1	NA	NA	NA	-146528	NR_126430	73761	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.015000	0.487562	
mm_111537.1	chr12	100887779	100887979	-	1	NA	NA	NA	11645	NM_001177674	238377	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.015000	0.572139	
mm_99818.1	chr11	108606163	108606363	+	1	NA	NA	NA	-76346	NM_145688	76380	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0.040000	0.487562	
mm_33506.1	chr4	130913087	130913287	+	1	NA	NA	NA	-147	NM_010686	16792	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3	lysosomal-associated protein transmembrane 5	protein-coding	0.020000	0.621891	-92(GCATATAAATGC,-,0.00)
mm_68018.1	chr7	100959572	100959772	-	1	NA	NA	NA	4694	NM_183168	233571	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.015000	0.467662	
mm_105581.1	chr11	106674560	106674760	-	1	NA	NA	NA	40621	NM_001305158	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.010000	0.587065	
mm_173197.1	chrX	62776629	62776829	-	1	NA	NA	NA	-249718	NR_045442	75545	Mm.391270	NR_045442	ENSMUSG00000085757	1700019B21Rik	-	RIKEN cDNA 1700019B21 gene	ncRNA	0.040000	0.492537	
mm_140853.1	chr17	23684235	23684435	-	1	NA	NA	NA	-309	NM_020293	56863	Mm.491368	NM_020293	ENSMUSG00000066720	Cldn9	nmf329	claudin 9	protein-coding	0.000000	0.507463	
mm_135919.1	chr16	67620801	67621001	-	1	NA	NA	NA	7	NM_001347247	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.120000	0.756219	
mm_168249.1	chr10	82629760	82629960	+	1	NA	NA	NA	18	NR_037190	624784	Mm.284252	NR_037190		Gm9855	ENSMUSG00000051559	thymine DNA glycosylase pseudogene	pseudo	0.135000	0.741294	-86(GCCCCGAAAAGG,-,0.00)
mm_92076.1	chr10	62663959	62664159	-	1	NA	NA	NA	-12861	NM_053183	94213	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	0.010000	0.502488	
mm_166799.1	chr7	3497708	3497908	-	1	NA	NA	NA	4744	NM_177363	245126	Mm.245747	NM_177363	ENSMUSG00000053338	Tarm1	9930022N03Rik|ENSMUSG00000053338|Gm9904|OLT-2	T cell-interacting, activating receptor on myeloid cells 1	protein-coding	0.010000	0.383085	
mm_8257.1	chr1	138848496	138848696	-	1	NA	NA	NA	-1017	NM_010714	16876	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0.055000	0.641791	
mm_139336.1	chr17	49454687	49454887	+	1	NA	NA	NA	26423	NM_020042	56738	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.015000	0.512438	
mm_103302.1	chr11	72550160	72550360	-	1	NA	NA	NA	-14	NM_029932	77577	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	0.015000	0.547264	
mm_112173.1	chr12	113421067	113421267	-	1	NA	NA	NA	-68398	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.577114	
mm_87423.1	chr10	50773268	50773468	+	1	NA	NA	NA	-122283	NM_011376	20464	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded homolog 1 (Drosophila)	protein-coding	0.000000	0.253731	-81(GTATTAATAGCC,+,0.00)
mm_74183.1	chr8	123492610	123492810	+	1	NA	NA	NA	14848	NR_028260	114896	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	0.035000	0.542289	
mm_71448.1	chr8	46521472	46521672	+	1	NA	NA	NA	-30497	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.015000	0.477612	
mm_9267.1	chr1	171632751	171632951	-	1	NA	NA	NA	9049	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.532338	
mm_120437.1	chr14	65835053	65835253	+	1	NA	NA	NA	-1184	NM_028039	71988	Mm.249280	NM_028039	ENSMUSG00000022034	Esco2	2410004I17Rik|D030072L07Rik	establishment of sister chromatid cohesion N-acetyltransferase 2	protein-coding	0.030000	0.477612	-32(TTCTATAAAAAC,-,0.00)
mm_9523.1	chr1	173766862	173767062	-	1	NA	NA	NA	-43	NM_008329	15951	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.005000	0.482587	
mm_28897.1	chr3	97994851	97995051	-	1	NA	NA	NA	-18587	NM_010928	18129	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.010000	0.477612	
mm_142179.1	chr17	36271260	36271460	-	1	NA	NA	NA	73	NM_178281	79263	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0.140000	0.766169	
mm_145218.1	chr18	50053299	50053499	+	1	NA	NA	NA	117	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.095000	0.701493	
mm_35246.1	chr4	19877504	19877704	-	1	NA	NA	NA	44962	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.010000	0.373134	
mm_77436.1	chr8	121578577	121578777	-	1	NA	NA	NA	129	NM_133765	76454	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0.160000	0.781095	
mm_147607.1	chr18	56921190	56921390	-	1	NA	NA	NA	4258	NM_177115	320253	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0.005000	0.407960	
mm_159530.1	chr4	64020492	64020692	-	1	NA	NA	NA	26423	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding	0.015000	0.522388	
mm_115078.1	chr13	102295189	102295389	+	1	NA	NA	NA	-398269	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.030000	0.567164	
mm_34359.1	chr4	144892579	144892779	+	1	NA	NA	NA	-148	NM_001172424	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.070000	0.601990	
mm_98886.1	chr11	97830038	97830238	+	1	NA	NA	NA	-10642	NM_001080935	68127	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0.030000	0.577114	
mm_40567.1	chr5	62858653	62858853	+	1	NA	NA	NA	44930	NM_001170705	100322896	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0.010000	0.353234	
mm_88988.1	chr10	81565575	81565775	+	1	NA	NA	NA	6231	NM_001276288	14797	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.025000	0.606965	
mm_106244.1	chr11	117782093	117782293	-	1	NA	NA	NA	-104	NM_001195090	217356	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0.055000	0.681592	
mm_58930.1	chr7	17973466	17973666	+	1	NA	NA	NA	1399	NM_023289	66996	Mm.36666	NM_023289	ENSMUSG00000030368	Ceacam11	1600015D01Rik	carcinoembryonic antigen-related cell adhesion molecule 11	protein-coding	0.000000	0.422886	
mm_57425.1	chr6	124913955	124914155	-	1	NA	NA	NA	-2350	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.015000	0.636816	
mm_30422.1	chr3	152667870	152668070	-	1	NA	NA	NA	170	NM_001081277	229949	Mm.207057	NM_001081277	ENSMUSG00000039058	Ak5	-	adenylate kinase 5	protein-coding	0.125000	0.771144	
mm_108803.1	chr12	91756930	91757130	+	1	NA	NA	NA	29406	NM_175367	108800	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.010000	0.542289	
mm_3390.1	chr1	140571976	140572176	+	1	NA	NA	NA	84326	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0.010000	0.328358	
mm_70933.1	chr8	25849514	25849714	+	1	NA	NA	NA	-9	NM_008432	16532	Mm.289679	NM_008432	ENSMUSG00000031576	Kcnu1	Kcnma3|Slo3|mSlo3	potassium channel, subfamily U, member 1	protein-coding	0.015000	0.462687	
mm_31713.1	chr4	62634277	62634477	+	1	NA	NA	NA	14705	NM_134257	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.045000	0.611940	
mm_156994.1	chrX	7422862	7423062	-	1	NA	NA	NA	26	NR_027924	68355	Mm.45111	NR_027924		2010204K13Rik	0610010M13Rik|Cip7	RIKEN cDNA 2010204K13 gene	ncRNA	0.045000	0.477612	
mm_6178.1	chr1	65100578	65100778	-	1	NA	NA	NA	2685	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.040000	0.522388	-28(GGCTTTATGAGA,-,0.00)
mm_116749.1	chr13	51798446	51798646	-	1	NA	NA	NA	-4799	NM_013660	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.000000	0.452736	
mm_63101.1	chr7	122627521	122627721	+	1	NA	NA	NA	-44123	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.035000	0.447761	
mm_131430.1	chr16	15637764	15637964	+	1	NA	NA	NA	-2	NM_011159	19090	Mm.71	NM_011159	ENSMUSG00000022672	Prkdc	AI326420|AU019811|DNA-PKcs|DNAPDcs|DNAPK|DNPK1|DOXNPH|HYRC1|XRCC7|dxnph|p460|scid|slip	protein kinase, DNA activated, catalytic polypeptide	protein-coding	0.095000	0.671642	
mm_144550.1	chr18	30322322	30322522	+	1	NA	NA	NA	49526	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding	0.015000	0.378109	
mm_96518.1	chr11	68495301	68495501	+	1	NA	NA	NA	-7618	NM_001004435	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.020000	0.557214	
mm_6958.1	chr1	86021743	86021943	-	1	NA	NA	NA	-99	NM_001122732	70060	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0.010000	0.567164	
mm_48702.1	chr5	147042569	147042769	-	1	NA	NA	NA	33903	NM_080795	140887	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	0.025000	0.552239	
mm_8553.1	chr1	155232493	155232693	-	1	NA	NA	NA	73890	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.030000	0.567164	-72(TACCATTAAAGC,-,0.00)
mm_134140.1	chr16	10700183	10700383	-	1	NA	NA	NA	85253	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.010000	0.557214	-34(GGCTTTATATAG,-,0.00),-32(CTTTATATAGAG,+,0.00)
mm_59984.1	chr7	30515051	30515251	+	1	NA	NA	NA	29	NR_036630	100504207	Mm.297831	NM_001004161	ENSMUSG00000062132	Arhgap33os	Gm1082	Rho GTPase activating protein 33, opposite strand	ncRNA	0.050000	0.587065	
mm_56986.1	chr6	120493877	120494077	-	1	NA	NA	NA	-170	NM_033567	94047	Mm.23088	NM_033567	ENSMUSG00000094626	Cecr6	AW048664	cat eye syndrome chromosome region, candidate 6	protein-coding	0.095000	0.731343	
mm_16146.1	chr2	172100519	172100719	+	1	NA	NA	NA	-57153	NM_175631	228942	Mm.40555	NM_175631	ENSMUSG00000067578	Cbln4	AI848962	cerebellin 4 precursor protein	protein-coding	0.060000	0.517413	
mm_89742.1	chr10	99107001	99107201	+	1	NA	NA	NA	-70	NM_027740	382406	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.150000	0.761194	
mm_158712.1	chrX	162552649	162552849	-	1	NA	NA	NA	90909	NM_001290633	194590	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	0.015000	0.477612	
mm_101934.1	chr11	50207122	50207322	-	1	NA	NA	NA	3598	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.030000	0.577114	
mm_149760.1	chr19	22816646	22816846	+	1	NA	NA	NA	66141	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.005000	0.398010	
mm_126022.1	chr15	76691148	76691348	+	1	NA	NA	NA	-5478	NM_182805	76282	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	0.015000	0.557214	49(TCCTTAATAGGG,+,0.00)
mm_27532.1	chr3	57542662	57542862	-	1	NA	NA	NA	33114	NM_133784	97064	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0.000000	0.313433	
mm_81364.1	chr9	108739608	108739808	+	1	NA	NA	NA	47565	NM_008924	19087	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0.000000	0.402985	
mm_34550.1	chr4	149586431	149586631	+	1	NA	NA	NA	63	NM_023051	65945	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0.185000	0.820896	
mm_121601.1	chr14	8003941	8004141	-	1	NA	NA	NA	1075	NM_001331064	66082	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	0.030000	0.442786	
mm_156495.1	chrX	144336093	144336293	+	1	NA	NA	NA	18227	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.015000	0.522388	
mm_149298.1	chr19	10699243	10699443	+	1	NA	NA	NA	10528	NM_181403	107305	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.015000	0.537313	
mm_147129.1	chr18	36068516	36068716	-	1	NA	NA	NA	-37587	NR_015571	74966	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA	0.105000	0.741294	
mm_112300.1	chr12	114709033	114709233	-	1	NA	NA	NA	-195439	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.432836	
mm_38225.1	chr4	135987126	135987326	-	1	NA	NA	NA	18	NM_025411	66193	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	0.170000	0.761194	
mm_19300.1	chr2	90471061	90471261	-	1	NA	NA	NA	8013	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.015000	0.427861	
mm_115381.1	chr13	113098253	113098453	+	1	NA	NA	NA	2628	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.015000	0.462687	
mm_100713.1	chr11	3805131	3805331	-	1	NA	NA	NA	58672	NM_152818	74309	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	0.005000	0.557214	
mm_74477.1	chr8	4275801	4276001	-	1	NA	NA	NA	4	NM_011592	21856	Mm.195249	NM_011592	ENSMUSG00000002949	Timm44	0710005E20Rik|D8Ertd118e|Mimt44|Tim44	translocase of inner mitochondrial membrane 44	protein-coding	0.090000	0.671642	
mm_4640.1	chr1	179959932	179960132	+	1	NA	NA	NA	-728	NM_001346804	226751	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	0.125000	0.776119	
mm_137384.1	chr17	25786475	25786675	+	1	NA	NA	NA	-5	NM_001165929	381077	Mm.328867	NM_001165929	ENSMUSG00000071202	Ccdc78	Gm938|Gm950	coiled-coil domain containing 78	protein-coding	0.005000	0.502488	
mm_131755.1	chr16	22857781	22857981	+	1	NA	NA	NA	36	NM_001190804	67838	Mm.37516	NM_026400	ENSMUSG00000004460	Dnajb11	1810031F23Rik|ABBP-2|AL024055|Dj9|ERdj3|ERj3p	DnaJ heat shock protein family (Hsp40) member B11	protein-coding	0.120000	0.736318	
mm_171650.1	chr4	40596226	40596426	+	1	NA	NA	NA	-70778	NR_040644	71293	Mm.399556	NR_040644	ENSMUSG00000086355	4933428C19Rik	-	RIKEN cDNA 4933428C19 gene	ncRNA	0.045000	0.572139	
mm_13170.1	chr2	92848621	92848821	+	1	NA	NA	NA	-66380	NM_030725	80976	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	0.010000	0.472637	
mm_124315.1	chr14	103218938	103219138	-	1	NA	NA	NA	-119472	NM_001347600	50789	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.015000	0.422886	
mm_106694.1	chr12	3438257	3438457	+	1	NA	NA	NA	11500	NM_172421	75302	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2 (Drosophila)	protein-coding	0.040000	0.472637	
mm_52526.1	chr6	115675850	115676050	+	1	NA	NA	NA	685	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.040000	0.552239	-64(TTCCCTAAAAGG,-,0.00)
mm_49141.1	chr6	10789643	10789843	+	1	NA	NA	NA	184635	NR_033776	57866	Mm.4397	NR_033776		AA545190	-	EST AA545190	ncRNA	0.005000	0.427861	
mm_71516.1	chr8	46846468	46846668	+	1	NA	NA	NA	106823	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.035000	0.512438	
mm_131615.1	chr16	19760265	19760465	+	1	NA	NA	NA	131	NM_001159407	108105	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	0.040000	0.577114	87(GGACATTTAAGG,-,0.00)
mm_100407.1	chr11	119418147	119418347	+	1	NA	NA	NA	27775	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.015000	0.497512	
mm_85131.1	chr9	95614641	95614841	-	1	NA	NA	NA	-22887	NM_029620	76477	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.000000	0.323383	
mm_167596.1	chr9	49222074	49222274	+	1	NA	NA	NA	-28357	NM_177701	235327	Mm.246604	NM_177701	ENSMUSG00000054156	Gm4894	A430041E03|EG235327	predicted gene 4894	protein-coding	0.000000	0.552239	
mm_48593.1	chr5	143992512	143992712	-	1	NA	NA	NA	22241	NM_177682	231874	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0.030000	0.537313	
mm_32572.1	chr4	109977926	109978126	+	1	NA	NA	NA	1	NM_172296	242620	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0.095000	0.666667	
mm_13388.1	chr2	103969485	103969685	+	1	NA	NA	NA	28	NM_001142336	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.080000	0.656716	
mm_151076.1	chr19	47579601	47579801	+	1	NA	NA	NA	-318	NM_009289	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0.185000	0.781095	
mm_36887.1	chr4	107253419	107253619	-	1	NA	NA	NA	14	NM_029985	77809	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	0.100000	0.736318	
mm_53608.1	chr6	138727786	138727986	+	1	NA	NA	NA	-69442	NM_015777	50540	Mm.84043	NM_015777	ENSMUSG00000046717	Igbp1b	alpha4-b	immunoglobulin (CD79A) binding protein 1b	protein-coding	0.005000	0.432836	
mm_15369.1	chr2	156421036	156421236	+	1	NA	NA	NA	227	NM_001291123	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.120000	0.706468	
mm_100418.1	chr11	119434671	119434871	+	1	NA	NA	NA	44299	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.015000	0.517413	
mm_96280.1	chr11	62951082	62951282	+	1	NA	NA	NA	-11	NM_025496	66338	Mm.46166	NM_025496	ENSMUSG00000042200	Cdrt4	1700019I23Rik	CMT1A duplicated region transcript 4	protein-coding	0.010000	0.552239	
mm_69190.1	chr7	127273922	127274122	-	1	NA	NA	NA	37	NM_009266	20768	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0.100000	0.636816	
mm_6381.1	chr1	72769519	72769719	-	1	NA	NA	NA	-54861	NM_008342	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.020000	0.452736	
mm_96405.1	chr11	67251617	67251817	+	1	NA	NA	NA	13905	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.025000	0.447761	
mm_6733.1	chr1	82826909	82827109	-	1	NA	NA	NA	-12451	NM_001310713	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.020000	0.492537	-33(CTCTATTTAAAC,-,0.00)
mm_140431.1	chr17	88112529	88112729	+	1	NA	NA	NA	-12883	NM_001190356	225058	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.015000	0.507463	
mm_157680.1	chrX	59567981	59568181	-	1	NA	NA	NA	17491	NM_001290414	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding	0.075000	0.686567	-28(GTTTATATAGAA,+,0.00)
mm_152561.1	chr19	11586360	11586560	-	1	NA	NA	NA	18344	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.010000	0.358209	
mm_138003.1	chr17	33817720	33817920	+	1	NA	NA	NA	6678	NM_016844	54127	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	0.145000	0.726368	
mm_54040.1	chr6	13461896	13462096	-	1	NA	NA	NA	48659	NR_038149	69413	Mm.177847	NR_038149	ENSMUSG00000101894	1700016P04Rik	-	RIKEN cDNA 1700016P04 gene	ncRNA	0.010000	0.422886	
mm_12646.1	chr2	74727160	74727360	+	1	NA	NA	NA	1190	NR_029566	387144		NR_029566	ENSMUSG00000065500	Mir10b	Mirn10b|mir-10b|mmu-mir-10b	microRNA 10b	ncRNA	0.030000	0.462687	
mm_117245.1	chr13	64363757	64363957	-	1	NA	NA	NA	6663	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.005000	0.303483	
mm_95299.1	chr11	46086570	46086770	+	1	NA	NA	NA	-15600	NR_106177	102465996		NR_106177	ENSMUSG00000098942	Mir8100	Gm27638|mmu-mir-8100	microRNA 8100	ncRNA	0.010000	0.437811	
mm_11780.1	chr2	39005210	39005410	+	1	NA	NA	NA	-179	NM_025592	66489	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0.070000	0.621891	
mm_152845.1	chr19	23652700	23652900	-	1	NA	NA	NA	12	NM_026188	67483	Mm.443287	NM_026188	ENSMUSG00000033053	1700028P14Rik	AV209940	RIKEN cDNA 1700028P14 gene	protein-coding	0.045000	0.562189	
mm_94934.1	chr11	29704181	29704381	+	1	NA	NA	NA	10507	NM_194051	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.000000	0.293532	
mm_11884.1	chr2	49621773	49621973	+	1	NA	NA	NA	2559	NM_008449	16574	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding	0.005000	0.283582	
mm_122678.1	chr14	52009557	52009757	-	1	NA	NA	NA	4901	NM_001253695	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.050000	0.567164	
mm_46338.1	chr5	101851412	101851612	-	1	NA	NA	NA	86382	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.000000	0.522388	
mm_165767.1	chr3	121570900	121571100	+	1	NA	NA	NA	-38656	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.025000	0.427861	
mm_161203.1	chr13	58402529	58402729	+	1	NA	NA	NA	32	NM_001168248	74386	Mm.85289	NM_028904	ENSMUSG00000035367	Rmi1	4932432N11Rik|C79893	RecQ mediated genome instability 1	protein-coding	0.100000	0.656716	
mm_141637.1	chr17	33067905	33068105	-	1	NA	NA	NA	53	NM_001009544	74042	Mm.84774	NM_001009544	ENSMUSG00000023350	4921501E09Rik	PHF8	RIKEN cDNA 4921501E09 gene	protein-coding	0.005000	0.457711	
mm_87776.1	chr10	60294873	60295073	+	1	NA	NA	NA	10512	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.552239	
mm_105730.1	chr11	109230923	109231123	-	1	NA	NA	NA	67158	NM_001165934	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0.000000	0.412935	
mm_25564.1	chr3	116562957	116563157	+	1	NA	NA	NA	84	NM_175413	109245	Mm.216027	NM_027321	ENSMUSG00000027961	Lrrc39	2010005E21Rik|9430028I06Rik|Myomasp	leucine rich repeat containing 39	protein-coding	0.015000	0.467662	
mm_78627.1	chr9	38730603	38730803	+	1	NA	NA	NA	12435	NM_172767	67776	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0.005000	0.358209	
mm_164535.1	chr17	6658968	6659168	+	1	NA	NA	NA	-3129	NM_001166627	100040531	Mm.457987	NM_001166627	ENSMUSG00000095677	Dynlt1f	100040631|Dynlt1e	dynein light chain Tctex-type 1F	protein-coding	0.030000	0.532338	
mm_158604.1	chrX	152295378	152295578	-	1	NA	NA	NA	32015	NR_040269	72997	Mm.254833	NR_040269		Kantr	2810454L23Rik|2900056M20Rik|Spasm	Kdm5c adjacent non-coding transcript	ncRNA	0.000000	0.323383	
mm_124963.1	chr15	15099250	15099450	+	1	NA	NA	NA	-1678751	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.000000	0.283582	
mm_56231.1	chr6	90661661	90661861	-	1	NA	NA	NA	42515	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.005000	0.427861	
mm_22384.1	chr2	181156849	181157049	-	1	NA	NA	NA	66	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.110000	0.666667	
mm_145505.1	chr18	60391432	60391632	+	1	NA	NA	NA	15503	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.388060	47(GTTTTTAAACTG,+,0.00)
mm_135201.1	chr16	36532150	36532350	-	1	NA	NA	NA	29884	NM_013803	12374	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.015000	0.582090	
mm_169552.1	chr15	103242586	103242786	+	1	NA	NA	NA	2232	NR_002883	434858	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.005000	0.432836	
mm_137128.1	chr17	22878026	22878226	+	1	NA	NA	NA	-10992	NM_001110254	240041	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	0.015000	0.363184	-73(AACCATAAAAGC,-,0.00)
mm_4085.1	chr1	167000955	167001155	+	1	NA	NA	NA	-362	NM_175461	226610	Mm.389217	NM_175461	ENSMUSG00000060568	Fam78b	C030014K22Rik|C030020L09Rik	family with sequence similarity 78, member B	protein-coding	0.160000	0.796020	
mm_16212.1	chr2	173073096	173073296	+	1	NA	NA	NA	46329	NM_001081387	664799	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris|OTTMUSG00000016680	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.015000	0.502488	
mm_16447.1	chr2	180456140	180456340	+	1	NA	NA	NA	-4738	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.110000	0.731343	
mm_79948.1	chr9	66040386	66040586	+	1	NA	NA	NA	-19683	NM_011149	19035	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	0.000000	0.368159	-1(CTTTTTCAAGGG,+,0.00)
mm_19993.1	chr2	118723425	118723625	-	1	NA	NA	NA	4913	NM_177568	18796	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	0.035000	0.597015	
mm_11353.1	chr2	30901531	30901731	+	1	NA	NA	NA	1666	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.025000	0.522388	
mm_55489.1	chr6	69417349	69417549	-	1	NA	NA	NA	-90275	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.378109	
mm_136217.1	chr16	89960682	89960882	-	1	NA	NA	NA	45	NM_009384	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.065000	0.611940	
mm_120628.1	chr14	70462803	70463003	+	1	NA	NA	NA	5386	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.020000	0.532338	
mm_107392.1	chr12	33314251	33314451	+	1	NA	NA	NA	11836	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.025000	0.587065	-97(CTCTCTTAAAGG,-,0.00),-96(TCTCTTAAAGGG,+,0.00)
mm_157876.1	chrX	75764545	75764745	-	1	NA	NA	NA	54	NR_029443	74396	Mm.162493	NR_029443	ENSMUSG00000087396	4933407K13Rik	A130080L05Rik	RIKEN cDNA 4933407K13 gene	ncRNA	0.050000	0.532338	
mm_119521.1	chr14	47489691	47489891	+	1	NA	NA	NA	17230	NM_001146085	78938	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	0.015000	0.348259	
mm_71557.1	chr8	49370820	49371020	+	1	NA	NA	NA	-696230	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.005000	0.497512	
mm_148987.1	chr19	8593999	8594199	+	1	NA	NA	NA	917	NM_001164635	19879	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	0.040000	0.616915	
mm_150777.1	chr19	44294200	44294400	+	1	NA	NA	NA	624	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.055000	0.547264	
mm_37881.1	chr4	132422391	132422591	-	1	NA	NA	NA	-45	NM_175306	100169	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0.080000	0.706468	
mm_106103.1	chr11	116274020	116274220	-	1	NA	NA	NA	97	NM_146032	217337	Mm.29655	NM_146032	ENSMUSG00000020780	Srp68	2610024I03Rik	signal recognition particle 68	protein-coding	0.105000	0.681592	
mm_105711.1	chr11	108343459	108343659	-	1	NA	NA	NA	329	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.085000	0.621891	
mm_78391.1	chr9	28645752	28645952	+	1	NA	NA	NA	854583	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.005000	0.402985	
mm_7008.1	chr1	86487328	86487528	-	1	NA	NA	NA	-39308	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.105000	0.646766	
mm_30598.1	chr4	6382503	6382703	+	1	NA	NA	NA	16923	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.015000	0.407960	
mm_121744.1	chr14	18816806	18817006	-	1	NA	NA	NA	76721	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0.005000	0.258706	
mm_124270.1	chr14	103007668	103007868	-	1	NA	NA	NA	-25131	NM_177715	239217	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0.005000	0.492537	
mm_38581.1	chr4	141819246	141819446	-	1	NA	NA	NA	6659	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.030000	0.557214	
mm_18598.1	chr2	66784915	66785115	-	1	NA	NA	NA	-105	NM_009135	20272	Mm.38127	NM_009135	ENSMUSG00000034810	Scn7a	1110034K09Rik|AI642000|NaG|Nav2|Nav2.3|Nax|Scn6a	sodium channel, voltage-gated, type VII, alpha	protein-coding	0.010000	0.547264	
mm_60368.1	chr7	44462043	44462243	+	1	NA	NA	NA	-3292	NM_026690	68352	Mm.88478	NM_026690	ENSMUSG00000038704	Aspdh	0610012D14Rik	aspartate dehydrogenase domain containing	protein-coding	0.095000	0.736318	
mm_104096.1	chr11	86688683	86688883	-	1	NA	NA	NA	4702	NM_001098810	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.000000	0.383085	
mm_141803.1	chr17	34518556	34518756	-	1	NA	NA	NA	-1304	NM_030747	624681	Mm.471592	NM_030747	ENSMUSG00000092618	Btnl6	EG624681|Gm6519|NG13	butyrophilin-like 6	protein-coding	0.005000	0.512438	
mm_131953.1	chr16	24448018	24448218	+	1	NA	NA	NA	27	NM_001145952	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.015000	0.587065	
mm_102073.1	chr11	52263706	52263906	-	1	NA	NA	NA	18789	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.025000	0.492537	
mm_36211.1	chr4	62468815	62469015	-	1	NA	NA	NA	1980	NM_001290522	71354	Mm.155573	NM_023597	ENSMUSG00000028391	Wdr31	5430402I10Rik|spWD	WD repeat domain 31	protein-coding	0.015000	0.417910	
mm_95266.1	chr11	44962841	44963041	+	1	NA	NA	NA	153987	NR_045100	100504255	Mm.123608	NR_045100	ENSMUSG00000084773	Gm12159	OTTMUSG00000005475	predicted gene 12159	ncRNA	0.040000	0.527363	
mm_13714.1	chr2	117179213	117179413	+	1	NA	NA	NA	-5814	NR_030440	732489		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.000000	0.318408	-38(TTTTTTAAAGTG,+,0.00),-25(TACTATTAAAAC,-,0.00)
mm_33320.1	chr4	129082739	129082939	+	1	NA	NA	NA	-22691	NM_025452	66260	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.030000	0.507463	
mm_142504.1	chr17	46073632	46073832	-	1	NA	NA	NA	-37272	NM_026768	68565	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	0.020000	0.532338	
mm_122305.1	chr14	34936008	34936208	-	1	NA	NA	NA	41499	NR_029774	723847		NR_029774	ENSMUSG00000065481	Mir346	Mirn346|mir-346|mmu-mir-346	microRNA 346	ncRNA	0.010000	0.547264	
mm_113810.1	chr13	46609459	46609659	+	1	NA	NA	NA	-59963	NM_001033192	97863	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	0.040000	0.557214	
mm_35607.1	chr4	43046081	43046281	-	1	NA	NA	NA	39	NR_045567	230088	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0.070000	0.671642	
mm_10342.1	chr2	11653941	11654141	+	1	NA	NA	NA	11249	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.015000	0.502488	25(GTTTATAGAGTG,+,0.00)
mm_121717.1	chr14	16446997	16447197	-	1	NA	NA	NA	81891	NM_009409	21974	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.005000	0.417910	
mm_120543.1	chr14	67256422	67256622	+	1	NA	NA	NA	23230	NM_001276387	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.000000	0.328358	
mm_36465.1	chr4	82506353	82506553	-	1	NA	NA	NA	-674	NM_008687	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.145000	0.805970	
mm_98124.1	chr11	87216392	87216592	+	1	NA	NA	NA	89417	NM_197987	68729	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.045000	0.542289	
mm_102658.1	chr11	63922221	63922421	-	1	NA	NA	NA	-37	NM_018805	54710	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0.085000	0.656716	
mm_112623.1	chr13	15647995	15648195	+	1	NA	NA	NA	154535	NR_045507	71071	Mm.380845	NR_045507		4933412O06Rik	-	RIKEN cDNA 4933412O06 gene	ncRNA	0.000000	0.363184	
mm_18880.1	chr2	76360355	76360555	-	1	NA	NA	NA	-2	NM_009989	13067	Mm.4872	NM_009989	ENSMUSG00000056436	Cyct	T-Cc	cytochrome c, testis	protein-coding	0.035000	0.582090	41(GCCTTTAAGAGG,-,0.00),42(CCTTTAAGAGGA,+,0.00)
mm_141086.1	chr17	25942739	25942939	-	1	NA	NA	NA	-850	NM_011822	14755	Mm.362054	NM_011822	ENSMUSG00000025728	Pigq	Gpi1|Gpi1h|Gpi1p|Gpih	phosphatidylinositol glycan anchor biosynthesis, class Q	protein-coding	0.000000	0.572139	
mm_10805.1	chr2	24349727	24349927	+	1	NA	NA	NA	4456	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.000000	0.497512	
mm_9262.1	chr1	171630322	171630522	-	1	NA	NA	NA	11478	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.015000	0.462687	
mm_63849.1	chr7	135653841	135654041	+	1	NA	NA	NA	-1627	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.025000	0.567164	
mm_106785.1	chr12	4769033	4769233	+	1	NA	NA	NA	134	NM_175431	207921	Mm.184898	NM_175431	ENSMUSG00000050545	Fam228b	A830093I24Rik	family with sequence similarity 228, member B	protein-coding	0.140000	0.711443	
mm_152556.1	chr19	11484551	11484751	-	1	NA	NA	NA	-7387	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.005000	0.452736	
mm_141280.1	chr17	27904534	27904734	-	1	NA	NA	NA	3090	NM_026836	68776	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|28kDa|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	0.005000	0.402985	
mm_3283.1	chr1	136626017	136626217	+	1	NA	NA	NA	1216	NM_001160251	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.025000	0.517413	
mm_172973.1	chr9	90537740	90537940	-	1	NA	NA	NA	-267071	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.025000	0.572139	
mm_76857.1	chr8	105413362	105413562	-	1	NA	NA	NA	40	NM_177791	279499	Mm.67628	NM_177791	ENSMUSG00000051648	Kctd19	4922504H04Rik	potassium channel tetramerisation domain containing 19	protein-coding	0.070000	0.626866	
mm_11867.1	chr2	48949490	48949690	+	1	NA	NA	NA	82	NM_029924	109241	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630|OTTMUSG00000012483	methyl-CpG binding domain protein 5	protein-coding	0.030000	0.616915	83(ATTTTTAAAGGG,+,0.00)
mm_55722.1	chr6	73469512	73469712	-	1	NA	NA	NA	55	NM_025737	66740	Mm.440760	NM_025737	ENSMUSG00000056197	4931417E11Rik	-	RIKEN cDNA 4931417E11 gene	protein-coding	0.030000	0.522388	
mm_168589.1	chr1	173599188	173599388	-	1	NA	NA	NA	-14	NM_001177350	623121	Mm.138449	NM_001033384	ENSMUSG00000073491	Ifi213	E030037K03Rik|E430029J22Rik|Pydc4|Pyr-A	interferon activated gene 213	protein-coding	0.010000	0.437811	
mm_29991.1	chr3	135440274	135440474	-	1	NA	NA	NA	1615	NM_025356	66105	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.020000	0.527363	
mm_48435.1	chr5	140623225	140623425	-	1	NA	NA	NA	15984	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.030000	0.661692	
mm_22540.1	chr3	8746875	8747075	+	1	NA	NA	NA	-79937	NM_010423	15213	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.000000	0.417910	-22(GACTTTATAAGC,-,0.00)
mm_69199.1	chr7	127375909	127376109	-	1	NA	NA	NA	41	NM_175560	269997	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	0.055000	0.527363	
mm_58749.1	chr7	13303104	13303304	+	1	NA	NA	NA	-22463	NM_001168504	232889	Mm.223639	NM_001004762	ENSMUSG00000033847	Pla2g4c	D7Ertd445e	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding	0.025000	0.492537	
mm_123814.1	chr14	70523339	70523539	-	1	NA	NA	NA	642	NM_011359	20389	Mm.24040	NM_011359	ENSMUSG00000022097	Sftpc	Bricd6|SP-C|SP5|SPC|Sftp-2|Sftp2|pro-SpC	surfactant associated protein C	protein-coding	0.010000	0.412935	
mm_48790.1	chr5	148652645	148652845	-	1	NA	NA	NA	-89095	NR_028285	70138	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.005000	0.547264	-11(GCCTCTTTAAGA,-,0.00)
mm_38164.1	chr4	135216703	135216903	-	1	NA	NA	NA	55957	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.030000	0.567164	
mm_116331.1	chr13	38037021	38037221	-	1	NA	NA	NA	132	NM_024242	71340	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1 (yeast)	protein-coding	0.065000	0.557214	
mm_7523.1	chr1	124100150	124100350	-	1	NA	NA	NA	-54691	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.303483	
mm_22885.1	chr3	30601976	30602176	+	1	NA	NA	NA	-11	NM_001289623	80732	Mm.200378	NM_030557	ENSMUSG00000037730	Mynn	2810011C24Rik|AA415053|AI661031|AW049392|Mynr|SBBIZ1	myoneurin	protein-coding	0.030000	0.487562	
mm_99127.1	chr11	100317554	100317754	+	1	NA	NA	NA	-2295	NM_011508	20918	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.010000	0.507463	
mm_95473.1	chr11	50793857	50794057	+	1	NA	NA	NA	33774	NM_013922	30944	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding	0.010000	0.492537	
mm_156211.1	chrX	134685033	134685233	+	1	NA	NA	NA	1329	NR_045454	77983	Mm.153204	NR_045454	ENSMUSG00000087024	B230119M05Rik	-	RIKEN cDNA B230119M05 gene	ncRNA	0.010000	0.522388	
mm_60329.1	chr7	44246687	44246887	+	1	NA	NA	NA	65	NM_025880	668661	Mm.274492	NM_025880	ENSMUSG00000045411	2410002F23Rik	-	RIKEN cDNA 2410002F23 gene	protein-coding	0.115000	0.691542	-33(CGCTATAAATGG,-,0.00)
mm_152763.1	chr19	20384446	20384646	-	1	NA	NA	NA	6125	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.005000	0.393035	
mm_113417.1	chr13	34037484	34037684	+	1	NA	NA	NA	-57	NM_026512	68021	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0.065000	0.611940	
mm_8449.1	chr1	152902643	152902843	-	1	NA	NA	NA	-97	NM_001005507	226517	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.070000	0.716418	
mm_4185.1	chr1	171160258	171160458	+	1	NA	NA	NA	4840	NM_001315500	17528	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0.020000	0.562189	
mm_103931.1	chr11	83648502	83648702	-	1	NA	NA	NA	776	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.025000	0.492537	
mm_142987.1	chr17	56287840	56288040	-	1	NA	NA	NA	2571	NM_025836	66905	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	0.010000	0.577114	
mm_153035.1	chr19	31910347	31910547	-	1	NA	NA	NA	41686	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.010000	0.467662	
mm_69549.1	chr7	135697777	135697977	-	1	NA	NA	NA	18502	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.000000	0.472637	
mm_64739.1	chr7	4752071	4752271	-	1	NA	NA	NA	731	NM_183406	333182	Mm.29625	NM_183405	ENSMUSG00000051811	Cox6b2	1700067P11Rik|BC048670|COXVIB2	cytochrome c oxidase subunit VIb polypeptide 2	protein-coding	0.050000	0.587065	
mm_32142.1	chr4	99656042	99656242	+	1	NA	NA	NA	-157	NM_010425	15221	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	0.075000	0.636816	
mm_79704.1	chr9	61054544	61054744	+	1	NA	NA	NA	37575	NR_040767	330956	Mm.207985	NR_040767	ENSMUSG00000111290	Gm5122	A430102L10	predicted gene 5122	ncRNA	0.010000	0.577114	-72(GCCTAGAAAAGG,-,0.00)
mm_140351.1	chr17	86831196	86831396	+	1	NA	NA	NA	77432	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.010000	0.407960	
mm_8723.1	chr1	160047403	160047603	-	1	NA	NA	NA	3123	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.015000	0.492537	57(CCCTTTAAGCTG,+,0.00)
mm_68508.1	chr7	111082520	111082720	-	1	NA	NA	NA	410	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.115000	0.671642	
mm_103064.1	chr11	69837671	69837871	-	1	NA	NA	NA	-754	NM_026982	69186	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	0.130000	0.776119	
mm_16421.1	chr2	180235043	180235243	+	1	NA	NA	NA	-9284	NM_001081171	16776	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0.015000	0.606965	
mm_63284.1	chr7	126776872	126777072	+	1	NA	NA	NA	-3	NM_026875	66090	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee-like 3 (Drosophila)	protein-coding	0.105000	0.736318	
mm_161588.1	chr16	32735771	32735971	+	1	NA	NA	NA	-15	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.005000	0.437811	
mm_105613.1	chr11	106787460	106787660	-	1	NA	NA	NA	934	NM_007840	13207	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0.095000	0.606965	
mm_84918.1	chr9	80067639	80067839	-	1	NA	NA	NA	836	NM_146003	215351	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.150000	0.800995	
mm_13145.1	chr2	92185381	92185581	+	1	NA	NA	NA	-2	NM_001109691	192285	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0.075000	0.582090	
mm_120469.1	chr14	65973222	65973422	+	1	NA	NA	NA	4839	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.025000	0.502488	
mm_60690.1	chr7	45163847	45164047	+	1	NA	NA	NA	26	NM_182993	72961	Mm.255631	NM_182993	ENSMUSG00000070570	Slc17a7	2900052E22Rik|AI851913|Vglut1	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	protein-coding	0.130000	0.805970	
mm_84926.1	chr9	81633438	81633638	-	1	NA	NA	NA	-986	NM_010482	15551	Mm.445308	NM_010482	ENSMUSG00000049511	Htr1b	-	5-hydroxytryptamine (serotonin) receptor 1B	protein-coding	0.045000	0.631841	59(TAATATAAAAGG,-,0.00)
mm_78072.1	chr9	15432070	15432270	+	1	NA	NA	NA	-73325	NM_133214	170748	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	0.010000	0.497512	
mm_160383.1	chr8	44950120	44950320	+	1	NA	NA	NA	12	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.000000	0.437811	
mm_105575.1	chr11	106612919	106613119	-	1	NA	NA	NA	-89	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.140000	0.820896	
mm_36434.1	chr4	82294688	82294888	-	1	NA	NA	NA	210991	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.000000	0.283582	
mm_60128.1	chr7	36739758	36739958	+	1	NA	NA	NA	41740	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.020000	0.542289	
mm_59294.1	chr7	25077427	25077627	+	1	NA	NA	NA	281	NM_175477	232976	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	0.120000	0.751244	
mm_18152.1	chr2	45085345	45085545	-	1	NA	NA	NA	24832	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.010000	0.422886	
mm_23116.1	chr3	37639836	37640036	+	1	NA	NA	NA	-11	NM_001305441	24063	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty homolog 1 (Drosophila)	protein-coding	0.130000	0.706468	
mm_34981.1	chr4	156014602	156014802	+	1	NA	NA	NA	1007	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.005000	0.522388	
mm_53271.1	chr6	128438715	128438915	+	1	NA	NA	NA	58	NR_028592	791299	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	ENSMUSG00000059659	predicted gene 10069	ncRNA	0.060000	0.562189	
mm_123972.1	chr14	75131479	75131679	-	1	NA	NA	NA	456	NM_001247984	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.030000	0.487562	45(GTCCTTTTAAAG,-,0.00),46(TCCTTTTAAAGA,-,0.00),47(CCTTTTAAAGAG,+,0.00)
mm_111553.1	chr12	101039980	101040180	-	1	NA	NA	NA	-11097	NM_026681	68339	Mm.156217	NM_026681	ENSMUSG00000021182	Ccdc88c	0610010D24Rik|AV000935|AW324073|Daple|mKIAA1509	coiled-coil domain containing 88C	protein-coding	0.000000	0.323383	
mm_45027.1	chr5	38684678	38684878	-	1	NA	NA	NA	48	NM_001177902	100515	Mm.38277	NM_001081144	ENSMUSG00000046572	Zfp518b	6820424L24Rik|AA410078|AI661722|Znf518b	zinc finger protein 518B	protein-coding	0.170000	0.781095	
mm_168527.1	chr1	160206533	160206733	-	1	NA	NA	NA	6259	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0.015000	0.467662	
mm_50970.1	chr6	60944381	60944581	+	1	NA	NA	NA	164	NM_001163507	70945	Mm.389770	NM_027613	ENSMUSG00000054641	Mmrn1	4921530G03Rik|Emilin4|Mmrn	multimerin 1	protein-coding	0.025000	0.412935	
mm_63205.1	chr7	125872599	125872799	+	1	NA	NA	NA	164823	NM_001081022	233865	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	0.055000	0.671642	
mm_121125.1	chr14	101840662	101840862	+	1	NA	NA	NA	139	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.045000	0.422886	
mm_82223.1	chr9	3024682	3024882	-	1	NA	NA	NA	13961	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.020000	0.358209	
mm_125084.1	chr15	26974138	26974338	+	1	NA	NA	NA	-78674	NM_176959	448987	Mm.253378	NM_176959	ENSMUSG00000043556	Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding	0.010000	0.522388	
mm_18106.1	chr2	44988783	44988983	-	1	NA	NA	NA	34294	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.080000	0.646766	
mm_9010.1	chr1	166002530	166002730	-	1	NA	NA	NA	4	NM_198932	18986	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0.080000	0.572139	
mm_123616.1	chr14	68120729	68120929	-	1	NA	NA	NA	-2923	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.015000	0.467662	
mm_6854.1	chr1	84258127	84258327	-	1	NA	NA	NA	26418	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.000000	0.253731	-71(TTCTATAAAAGG,-,0.00)
mm_135095.1	chr16	34958754	34958954	-	1	NA	NA	NA	10	NR_045722	278725	Mm.436927	NR_045722		E130310I04Rik	A930019C19Rik	RIKEN cDNA E130310I04 gene	ncRNA	0.020000	0.542289	77(AACCATAAAAGG,-,0.00)
mm_81055.1	chr9	105658402	105658602	+	1	NA	NA	NA	15507	NM_001081309	75669	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 4, p150	protein-coding	0.030000	0.562189	
mm_112918.1	chr13	20923300	20923500	+	1	NA	NA	NA	129287	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.368159	
mm_147516.1	chr18	52518639	52518839	-	1	NA	NA	NA	10982	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.010000	0.328358	72(CCCTATATAAAA,-,0.00)
mm_143561.1	chr17	74191939	74192139	-	1	NA	NA	NA	102824	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.005000	0.353234	
mm_155566.1	chrX	76264197	76264397	+	1	NA	NA	NA	-9	NM_001013760	238829	Mm.292319	NM_001013760	ENSMUSG00000071738	Cldn34b3	EG238829|Gm4937	claudin 34B3	protein-coding	0.005000	0.402985	
mm_109454.1	chr12	111151919	111152119	+	1	NA	NA	NA	-14351	NM_001286122	22031	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.005000	0.547264	
mm_150866.1	chr19	45018076	45018276	+	1	NA	NA	NA	41	NM_001130526	226154	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.130000	0.805970	
mm_50063.1	chr6	41188129	41188329	+	1	NA	NA	NA	-114043	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.005000	0.477612	
mm_11032.1	chr2	26916278	26916478	+	1	NA	NA	NA	-43	NM_013678	20931	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	0.085000	0.611940	
mm_168385.1	chr1	123857106	123857306	+	1	NA	NA	NA	188353	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.070000	0.651741	
mm_86952.1	chr10	24915529	24915729	+	1	NA	NA	NA	4965	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.025000	0.512438	
mm_34440.1	chr4	147936733	147936933	+	1	NA	NA	NA	-57	NM_011122	18822	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	0.110000	0.726368	
mm_37905.1	chr4	132734731	132734931	-	1	NA	NA	NA	-2285	NM_201368	381560	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	0.005000	0.343284	
mm_20047.1	chr2	120207131	120207331	-	1	NA	NA	NA	38104	NM_177845	329502	Mm.330505	NM_177845	ENSMUSG00000050211	Pla2g4e	2310026J01Rik|C230096D22|Pla2epsilon	phospholipase A2, group IVE	protein-coding	0.025000	0.592040	
mm_8008.1	chr1	134803329	134803529	-	1	NA	NA	NA	292	NR_015606	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.015000	0.457711	
mm_84722.1	chr9	73969004	73969204	-	1	NA	NA	NA	-35537	NM_001081153	208898	Mm.41035	NM_001081153	ENSMUSG00000062151	Unc13c	1500037O19Rik|AU019458|D9Ertd414e|Munc13-3|Unc13h3	unc-13 homolog C (C. elegans)	protein-coding	0.020000	0.582090	
mm_168838.1	chr12	23189589	23189789	-	1	NA	NA	NA	-179446	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA	0.130000	0.746269	
mm_160764.1	chr10	94944240	94944440	-	1	NA	NA	NA	238	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.115000	0.711443	
mm_29290.1	chr3	107753725	107753925	-	1	NA	NA	NA	6644	NM_001113530	12977	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0.015000	0.477612	-12(GCGCTTTAAAGA,-,0.00),-11(CGCTTTAAAGAC,-,0.00)
mm_98272.1	chr11	89010801	89011001	+	1	NA	NA	NA	11498	NM_009546	217069	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.015000	0.462687	
mm_156405.1	chrX	140277649	140277849	+	1	NA	NA	NA	-33199	NR_037208	100499512		NR_037208	ENSMUSG00000093102	Mir3475	mir-3475|mmu-mir-3475	microRNA 3475	ncRNA	0.125000	0.761194	
mm_112731.1	chr13	19210222	19210422	+	1	NA	NA	NA	185491	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.388060	
mm_167274.1	chr8	33844693	33844893	-	1	NA	NA	NA	85070	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.055000	0.597015	
mm_97005.1	chr11	70879319	70879519	+	1	NA	NA	NA	34658	NM_001291142	54189	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0.045000	0.472637	
mm_48263.1	chr5	137871685	137871885	-	1	NA	NA	NA	-27	NM_001024932	545812	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.010000	0.527363	
mm_170802.1	chr2	175640262	175640462	+	1	NA	NA	NA	-29	NM_001177543	100039060	Mm.289463	NM_001177543	ENSMUSG00000078886	0610010B08Rik	Gm2026	RIKEN cDNA 0610010B08 gene	protein-coding	0.015000	0.497512	
mm_23485.1	chr3	60500676	60500876	+	1	NA	NA	NA	-403	NM_001253711	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.020000	0.492537	44(GCCTTTAAACTG,+,0.00)
mm_30581.1	chr4	5536723	5536923	+	1	NA	NA	NA	-95505	NR_038183	73872	Mm.427301	NR_038183	ENSMUSG00000086066	4930423M02Rik	-	RIKEN cDNA 4930423M02 gene	ncRNA	0.000000	0.398010	
mm_83072.1	chr9	37657060	37657260	-	1	NA	NA	NA	152	NM_025289	21376	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	0.085000	0.651741	
mm_84708.1	chr9	72985240	72985440	-	1	NA	NA	NA	36	NM_001198789	546143	Mm.260946	NM_001198789	ENSMUSG00000086158	Ccpg1os	EG546143|Gm5918	cell cycle progression 1, opposite strand	protein-coding	0.085000	0.616915	
mm_41243.1	chr5	88765118	88765318	+	1	NA	NA	NA	205	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.110000	0.696517	
mm_13287.1	chr2	101649640	101649840	+	1	NA	NA	NA	-208	NM_009019	19373	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0.015000	0.512438	
mm_64544.1	chr7	144284385	144284585	+	1	NA	NA	NA	100	NM_001081370	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.025000	0.582090	55(TCCTCTTTAAGC,-,0.00),57(CTCTTTAAGCCC,+,0.00)
mm_90672.1	chr10	128896153	128896353	+	1	NA	NA	NA	-4535	NM_010272	14561	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	0.015000	0.562189	
mm_8872.1	chr1	162859778	162859978	-	1	NA	NA	NA	122	NM_001330291	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.025000	0.572139	
mm_101253.1	chr11	20830967	20831167	-	1	NA	NA	NA	41	NM_173752	216551	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.185000	0.805970	
mm_63204.1	chr7	125829561	125829761	+	1	NA	NA	NA	121785	NM_001081022	233865	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	0.005000	0.537313	
mm_16101.1	chr2	169632405	169632605	+	1	NA	NA	NA	-1141	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.020000	0.616915	
mm_21635.1	chr2	164278231	164278431	-	1	NA	NA	NA	-24	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.000000	0.437811	-40(CCTTTTATAACT,+,0.00)
mm_3369.1	chr1	138960065	138960265	+	1	NA	NA	NA	-3544	NM_001166501	329260	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.010000	0.452736	
mm_10491.1	chr2	14824007	14824207	+	1	NA	NA	NA	15	NM_001252533	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.025000	0.487562	
mm_26346.1	chr3	142547371	142547571	+	1	NA	NA	NA	-12581	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.000000	0.407960	
mm_89693.1	chr10	97567976	97568176	+	1	NA	NA	NA	2575	NM_008524	17022	Mm.18888	NM_008524	ENSMUSG00000036446	Lum	Ldc|SLRR2D	lumican	protein-coding	0.015000	0.432836	
mm_63627.1	chr7	128344635	128344835	+	1	NA	NA	NA	-46604	NM_145590	233913	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.010000	0.502488	-34(GTGTATAAAAGG,-,0.00)
mm_25722.1	chr3	122729782	122729982	+	1	NA	NA	NA	724	NM_153422	242202	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	0.080000	0.691542	
mm_3293.1	chr1	136680366	136680566	+	1	NA	NA	NA	-2930	NR_045324	100503460	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.015000	0.482587	40(CCTTTTCAAGTC,+,0.00)
mm_155529.1	chrX	74282695	74282895	+	1	NA	NA	NA	77	NM_001242615	66826	Mm.268483	NM_181516	ENSMUSG00000009995	Taz	5031411C02Rik|9130012G04Rik|AW107266|AW552613|G4.5	tafazzin	protein-coding	0.060000	0.552239	
mm_166854.1	chr7	19697560	19697760	-	1	NA	NA	NA	738	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.020000	0.537313	
mm_44668.1	chr5	29378269	29378469	-	1	NA	NA	NA	21	NM_020295	56873	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0.095000	0.641791	
mm_82925.1	chr9	35116881	35117081	-	1	NA	NA	NA	-171	NM_009178	20443	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0.115000	0.721393	
mm_48778.1	chr5	148552116	148552316	-	1	NA	NA	NA	572	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.075000	0.562189	
mm_128111.1	chr15	28025838	28026038	-	1	NA	NA	NA	-90	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.075000	0.641791	
mm_75279.1	chr8	41015716	41015916	-	1	NA	NA	NA	-1652	NR_015457	78849	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	0.005000	0.383085	72(TTTTAAATAGCC,+,0.00)
mm_113867.1	chr13	48490963	48491163	+	1	NA	NA	NA	22347	NM_001164575	67911	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	0.025000	0.542289	
mm_82816.1	chr9	31004103	31004303	-	1	NA	NA	NA	-26441	NM_001115130	235132	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.020000	0.462687	
mm_146793.1	chr18	20114813	20115013	-	1	NA	NA	NA	-140	NM_013504	13505	Mm.33740	NM_013504	ENSMUSG00000044322	Dsc1	1110020A10Rik|AI507491	desmocollin 1	protein-coding	0.000000	0.537313	
mm_73564.1	chr8	109575689	109575889	+	1	NA	NA	NA	3383	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.045000	0.552239	
mm_111089.1	chr12	80436332	80436532	-	1	NA	NA	NA	169	NM_177267	320808	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	0.115000	0.741294	
mm_132483.1	chr16	36879966	36880166	+	1	NA	NA	NA	-4945	NM_030035	224139	Mm.244815	NM_030035	ENSMUSG00000034243	Golgb1	4930428L02Rik|628101|6330407A06Rik|AU042952|C130074L01Rik|F730017E11Rik|Gm6840|mKIAA4151	golgi autoantigen, golgin subfamily b, macrogolgin 1	protein-coding	0.015000	0.412935	-37(GGCTTTATAGGT,-,0.00)
mm_24299.1	chr3	89366185	89366385	+	1	NA	NA	NA	-1032	NM_029974	77772	Mm.164013	NM_029974	ENSMUSG00000042672	Dcst1	A330106H01Rik	DC-STAMP domain containing 1	protein-coding	0.030000	0.477612	
mm_112830.1	chr13	20818732	20818932	+	1	NA	NA	NA	24719	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.358209	
mm_108462.1	chr12	83520376	83520576	+	1	NA	NA	NA	10	NM_030246	73828	Mm.38238	NM_030246	ENSMUSG00000021222	Dcaf4	1110018E21Rik|Wdr21	DDB1 and CUL4 associated factor 4	protein-coding	0.065000	0.577114	
mm_156412.1	chrX	140664483	140664683	+	1	NA	NA	NA	-13445	NM_011845	23947	Mm.131097	NM_011845	ENSMUSG00000000266	Mid2	FXY2|Trim1	midline 2	protein-coding	0.040000	0.572139	
mm_103620.1	chr11	78689911	78690111	-	1	NA	NA	NA	7414	NM_008702	18099	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0.005000	0.328358	
mm_155663.1	chrX	87238274	87238474	+	1	NA	NA	NA	877249	NM_001160403	331461	Mm.121680	NM_001160403	ENSMUSG00000052372	Il1rapl1	6330532G10Rik|C030039N24|IL1R8|IL1RAPL|MRX34|OPHN4|TIGIRR-2	interleukin 1 receptor accessory protein-like 1	protein-coding	0.050000	0.601990	
mm_82477.1	chr9	16502336	16502536	-	1	NA	NA	NA	-124205	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.065000	0.592040	
mm_132194.1	chr16	32471413	32471613	+	1	NA	NA	NA	16366	NM_145932	106407	Mm.476915	NM_145932	ENSMUSG00000035699	Slc51a	AV001382|AW261577|D630035O19Rik|OSTalpha|Osta	solute carrier family 51, alpha subunit	protein-coding	0.010000	0.497512	
mm_60465.1	chr7	44477803	44478003	+	1	NA	NA	NA	-6614	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.467662	
mm_91617.1	chr10	41634047	41634247	-	1	NA	NA	NA	-27552	NM_001303469	75973	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0.045000	0.567164	
mm_62631.1	chr7	107603933	107604133	+	1	NA	NA	NA	-2811	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.015000	0.527363	
mm_59723.1	chr7	28787680	28787880	+	1	NA	NA	NA	-1189	NM_177158	320435	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0.025000	0.641791	
mm_35928.1	chr4	53032200	53032400	-	1	NA	NA	NA	20420	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.025000	0.393035	
mm_95363.1	chr11	48902193	48902393	+	1	NA	NA	NA	-141	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.005000	0.472637	
mm_105497.1	chr11	106159849	106160049	-	1	NA	NA	NA	193	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.155000	0.781095	
mm_67794.1	chr7	97737521	97737721	-	1	NA	NA	NA	626	NM_175105	66333	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.045000	0.582090	
mm_50946.1	chr6	58596604	58596804	+	1	NA	NA	NA	32	NM_011920	26357	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP-binding cassette, sub-family G (WHITE), member 2	protein-coding	0.005000	0.427861	
mm_134705.1	chr16	22857445	22857645	-	1	NA	NA	NA	124	NM_001081368	70573	Mm.68291	NM_001081368	ENSMUSG00000004462	Tbccd1	5730478M09Rik|AU015083|BB165076	TBCC domain containing 1	protein-coding	0.060000	0.547264	
mm_36406.1	chr4	77915936	77916136	-	1	NA	NA	NA	295859	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.323383	
mm_23792.1	chr3	79591293	79591493	+	1	NA	NA	NA	4	NM_026352	67738	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	0.100000	0.636816	
mm_95129.1	chr11	34299613	34299813	+	1	NA	NA	NA	-15109	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.000000	0.497512	
mm_130434.1	chr15	98170361	98170561	-	1	NA	NA	NA	2655	NM_177716	239650	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	0.015000	0.572139	
mm_36237.1	chr4	63154710	63154910	-	1	NA	NA	NA	-638	NM_007443	11699	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.015000	0.507463	1(TCTTTTCAAGCG,+,0.00)
mm_36275.1	chr4	63730354	63730554	-	1	NA	NA	NA	14659	NM_177371	326623	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0.020000	0.462687	-39(CCTCATAGAGTC,+,0.00)
mm_11011.1	chr2	26580968	26581168	+	1	NA	NA	NA	12	NM_178444	353156	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0.020000	0.606965	
mm_137199.1	chr17	23868002	23868202	+	1	NA	NA	NA	30	NM_020487	57256	Mm.386785	NM_020487	ENSMUSG00000024116	Prss21	1700023E12Rik|TESP5|mT4|testisin	protease, serine 21	protein-coding	0.060000	0.631841	
mm_98994.1	chr11	98775920	98776120	+	1	NA	NA	NA	-643	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.000000	0.477612	5(CCTCATAGAGAG,+,0.00)
mm_172294.1	chr6	96969523	96969723	+	1	NA	NA	NA	90788	NM_177233	320701	Mm.131700	NM_177233	ENSMUSG00000046500	Fam19a4	C130034I18Rik|Fam19a4 Tafa-4|Tafa-4	family with sequence similarity 19, member A4	protein-coding	0.030000	0.417910	
mm_101627.1	chr11	36007619	36007819	-	1	NA	NA	NA	-27630	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.035000	0.358209	
mm_112112.1	chr12	112797010	112797210	-	1	NA	NA	NA	-11865	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.020000	0.621891	
mm_52841.1	chr6	121732872	121733072	+	1	NA	NA	NA	96799	NM_175628	232345	Mm.30151	NM_175628	ENSMUSG00000030111	A2m	A2mp	alpha-2-macroglobulin	protein-coding	0.005000	0.427861	
mm_12356.1	chr2	69749544	69749744	+	1	NA	NA	NA	26556	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.015000	0.393035	
mm_129531.1	chr15	79285384	79285584	-	1	NA	NA	NA	25	NM_177580	207495	Mm.309647	NM_177580	ENSMUSG00000018126	Baiap2l2	BC048937	BAI1-associated protein 2-like 2	protein-coding	0.020000	0.631841	
mm_5407.1	chr1	33813166	33813366	-	1	NA	NA	NA	1329	NM_133817	98403	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	0.010000	0.482587	
mm_86882.1	chr10	22058774	22058974	+	1	NA	NA	NA	9205	NM_053264	114671	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	0.050000	0.572139	
mm_158669.1	chrX	157579679	157579879	-	1	NA	NA	NA	-10794	NM_001098723	100073351	Mm.491276	NM_001098723	ENSMUSG00000046873	Yy2	-	Yy2 transcription factor	protein-coding	0.000000	0.542289	-38(CCTTTAAGACTC,+,0.00)
mm_46450.1	chr5	105116686	105116886	-	1	NA	NA	NA	-6494	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.005000	0.383085	
mm_169381.1	chr14	40184333	40184533	+	1	NA	NA	NA	528770	NR_045936	73591	Mm.65499	NR_045936	ENSMUSG00000101261	1700109I08Rik	-	RIKEN cDNA 1700109I08 gene	ncRNA	0.010000	0.497512	
mm_20179.1	chr2	122594885	122595085	-	1	NA	NA	NA	16292	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.005000	0.208955	78(GCTTTTAAACAA,+,0.00)
mm_142109.1	chr17	35835885	35836085	-	1	NA	NA	NA	2316	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.010000	0.537313	
mm_63179.1	chr7	125487563	125487763	+	1	NA	NA	NA	3879	NM_026330	67711	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.005000	0.353234	
mm_143662.1	chr17	79714941	79715141	-	1	NA	NA	NA	0	NM_009994	13078	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0.050000	0.601990	
mm_134616.1	chr16	21063031	21063231	-	1	NA	NA	NA	90813	NM_025634	66561	Mm.422867	NM_025634	ENSMUSG00000090356	Teddm3	2310042E22Rik	transmembrane epididymal family member 3	protein-coding	0.000000	0.497512	
mm_84461.1	chr9	66590574	66590774	-	1	NA	NA	NA	2441	NM_144937	235441	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.000000	0.348259	-62(GCATTTATAGTA,+,0.00)
mm_41821.1	chr5	103982833	103983033	+	1	NA	NA	NA	-5545	NM_001163486	243168	Mm.284944	NM_198030	ENSMUSG00000034528	Hsd17b13	AI047820|PAN1B-like|Pan1b	hydroxysteroid (17-beta) dehydrogenase 13	protein-coding	0.025000	0.457711	27(GGCCATAAAAAA,-,0.00)
mm_123232.1	chr14	60087250	60087450	-	1	NA	NA	NA	-516	NM_015803	50769	Mm.319599	NM_015803	ENSMUSG00000021983	Atp8a2	AI415030|Atpc1b|agil|wl	ATPase, aminophospholipid transporter-like, class I, type 8A, member 2	protein-coding	0.030000	0.552239	
mm_78113.1	chr9	20642784	20642984	+	1	NA	NA	NA	-78	NM_013911	30843	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding	0.045000	0.592040	
mm_171006.1	chr2	80838195	80838395	+	1	NA	NA	NA	199031	NM_001190179	69482	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	0.035000	0.592040	
mm_149463.1	chr19	11530837	11531037	+	1	NA	NA	NA	-5912	NM_025658	66607	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	0.000000	0.283582	
mm_38615.1	chr4	141932988	141933188	-	1	NA	NA	NA	-49904	NR_040672	545691	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037|OTTMUSG00000010113	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.020000	0.606965	
mm_81470.1	chr9	109931404	109931604	+	1	NA	NA	NA	-270	NM_001205331	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.095000	0.696517	
mm_13681.1	chr2	116914174	116914374	+	1	NA	NA	NA	14122	NR_040335	320975	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.030000	0.527363	-34(GGGTATATAAAA,-,0.00),-32(GTATATAAAAGG,-,0.00),70(GCTCTTAAACCC,+,0.00)
mm_85159.1	chr9	96333456	96333656	-	1	NA	NA	NA	30743	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.025000	0.432836	
mm_20350.1	chr2	127788777	127788977	-	1	NA	NA	NA	14	NM_016902	53885	Mm.210766	NM_016902	ENSMUSG00000027378	Nphp1	-	nephronophthisis 1 (juvenile) homolog (human)	protein-coding	0.125000	0.701493	
mm_141010.1	chr17	25014220	25014420	-	1	NA	NA	NA	910	NM_020608	57354	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	Crm, cramped-like (Drosophila)	protein-coding	0.095000	0.701493	
mm_89736.1	chr10	99013184	99013384	+	1	NA	NA	NA	-93887	NM_027740	382406	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.000000	0.333333	
mm_27315.1	chr3	50366694	50366894	-	1	NA	NA	NA	76819	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.248756	
mm_128767.1	chr15	66286712	66286912	-	1	NA	NA	NA	-588	NM_152923	110862	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	0.100000	0.761194	
mm_60941.1	chr7	46919911	46920111	+	1	NA	NA	NA	-81	NM_021884	22088	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	0.140000	0.721393	
mm_65203.1	chr7	19696908	19697108	-	1	NA	NA	NA	1390	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.060000	0.611940	
mm_90797.1	chr10	7212135	7212335	-	1	NA	NA	NA	2	NM_172546	215748	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.135000	0.691542	
mm_49418.1	chr6	28981408	28981608	+	1	NA	NA	NA	-41111	NR_029567	387237		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	0.085000	0.681592	
mm_161991.1	chr19	34599251	34599451	-	1	NA	NA	NA	76	NM_001110517	667373	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c|OTTMUSG00000016644	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	0.000000	0.407960	
mm_110579.1	chr12	56521246	56521446	-	1	NA	NA	NA	8074	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.055000	0.562189	-34(CCTTTTAAATAC,+,0.00)
mm_158107.1	chrX	102071133	102071333	-	1	NA	NA	NA	74	NM_001278534	331474	Mm.23297	NM_183318	ENSMUSG00000049191	Rgag4	6430402L03Rik|Mar5|Mart5|mKIAA2001	retrotransposon gag domain containing 4	protein-coding	0.070000	0.636816	5(GAGCTTAAAAGG,-,0.00),7(GCTTAAAAGGCG,+,0.00)
mm_75043.1	chr8	32819677	32819877	-	1	NA	NA	NA	130249	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding	0.000000	0.348259	
mm_69447.1	chr7	133015221	133015421	-	1	NA	NA	NA	-74	NM_001170744	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.030000	0.467662	
mm_7457.1	chr1	120435625	120435825	-	1	NA	NA	NA	69359	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.010000	0.522388	
mm_37363.1	chr4	120810311	120810511	-	1	NA	NA	NA	15330	NM_001277095	18046	Mm.435590	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0.000000	0.353234	
mm_30369.1	chr3	152193629	152193829	-	1	NA	NA	NA	116	NM_025926	67035	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0.035000	0.507463	
mm_44575.1	chr5	24842305	24842505	-	1	NA	NA	NA	-44	NM_053075	19744	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.175000	0.756219	
mm_103451.1	chr11	76217441	76217641	-	1	NA	NA	NA	31	NM_177367	276919	Mm.482713	NM_177367	ENSMUSG00000049396	Gemin4	4932415L08Rik|AU015359	gem (nuclear organelle) associated protein 4	protein-coding	0.120000	0.711443	
mm_91321.1	chr10	24959856	24960056	-	1	NA	NA	NA	-32486	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.010000	0.507463	
mm_31885.1	chr4	82315852	82316052	+	1	NA	NA	NA	189827	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.010000	0.417910	
mm_62449.1	chr7	101384800	101385000	+	1	NA	NA	NA	-626	NM_027180	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.020000	0.631841	
mm_96174.1	chr11	61578914	61579114	+	1	NA	NA	NA	673	NM_010148	13855	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0.120000	0.721393	
mm_49085.1	chr6	6863461	6863661	+	1	NA	NA	NA	227	NM_010057	13396	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding	0.110000	0.726368	
mm_54672.1	chr6	39241582	39241782	-	1	NA	NA	NA	-34909	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.010000	0.447761	
mm_71763.1	chr8	66397580	66397780	+	1	NA	NA	NA	11379	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.000000	0.378109	
mm_20863.1	chr2	148438347	148438547	-	1	NA	NA	NA	5088	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.005000	0.477612	
mm_58801.1	chr7	16295748	16295948	+	1	NA	NA	NA	-9053	NM_001136471	243846	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0.040000	0.432836	
mm_111406.1	chr12	91110154	91110354	-	1	NA	NA	NA	25	NR_030473	735273		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	0.010000	0.343284	
mm_92220.1	chr10	68277222	68277422	-	1	NA	NA	NA	1404	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.070000	0.482587	
mm_84676.1	chr9	72084650	72084850	-	1	NA	NA	NA	26451	NM_001253862	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.000000	0.313433	34(GCCTTTAAAATC,-,0.00),35(CCTTTAAAATCA,+,0.00)
mm_137758.1	chr17	29487351	29487551	+	1	NA	NA	NA	-3594	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.010000	0.487562	
mm_102600.1	chr11	62389682	62389882	-	1	NA	NA	NA	48733	NM_001252313	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.010000	0.243781	
mm_147923.1	chr18	65890655	65890855	-	1	NA	NA	NA	17269	NM_175012	225642	Mm.20298	NM_175012	ENSMUSG00000024517	Grp	BLP	gastrin releasing peptide	protein-coding	0.030000	0.517413	
mm_79912.1	chr9	65462440	65462640	+	1	NA	NA	NA	1603	NM_138584	27965	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	spastic paraplegia 21 homolog (human)	protein-coding	0.005000	0.363184	
mm_22781.1	chr3	21954985	21955185	+	1	NA	NA	NA	-121567	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.010000	0.393035	
mm_41515.1	chr5	92387675	92387875	+	1	NA	NA	NA	-359	NM_181728	109979	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0.020000	0.492537	
mm_56682.1	chr6	113910349	113910549	-	1	NA	NA	NA	-18910	NM_001036684	11941	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.020000	0.626866	
mm_148480.1	chr19	4125873	4126073	+	1	NA	NA	NA	13	NM_025889	66990	Mm.276255	NM_025889		Tmem134	2410001H17Rik|AI463452	transmembrane protein 134	protein-coding	0.105000	0.731343	
mm_45109.1	chr5	45450030	45450230	-	1	NA	NA	NA	99	NM_024236	110391	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	0.105000	0.691542	
mm_130460.1	chr15	98607389	98607589	-	1	NA	NA	NA	144	NM_007405	11512	Mm.157091	NM_007405	ENSMUSG00000022994	Adcy6	AC6|mKIAA0422	adenylate cyclase 6	protein-coding	0.020000	0.457711	
mm_73736.1	chr8	113644057	113644257	+	1	NA	NA	NA	944	NM_001048145	668110	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	0.005000	0.368159	
mm_35107.1	chr4	9643528	9643728	-	1	NA	NA	NA	89	NM_001177853	65973	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.005000	0.477612	
mm_12293.1	chr2	69035979	69036179	+	1	NA	NA	NA	-99721	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.000000	0.383085	
mm_11026.1	chr2	26902979	26903179	+	1	NA	NA	NA	-192	NM_009298	20935	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	0.040000	0.597015	
mm_89159.1	chr10	86068096	86068296	+	1	NA	NA	NA	-27658	NR_038024	78170	Mm.444790	NR_038024		4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0.025000	0.601990	
mm_154591.1	chrX	7579655	7579855	+	1	NA	NA	NA	79	NM_054039	20371	Mm.182291	NM_054039	ENSMUSG00000039521	Foxp3	JM2|scurfin|sf	forkhead box P3	protein-coding	0.010000	0.562189	
mm_81651.1	chr9	110953698	110953898	+	1	NA	NA	NA	2253	NM_028838	74249	Mm.307615	NM_028838	ENSMUSG00000032495	Lrrc2	2400002D05Rik|4933431K03Rik	leucine rich repeat containing 2	protein-coding	0.055000	0.522388	
mm_142840.1	chr17	51795517	51795717	-	1	NA	NA	NA	16437	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.005000	0.288557	
mm_23633.1	chr3	66401054	66401254	+	1	NA	NA	NA	-104317	NM_145820	72789	Mm.443526	NM_028357	ENSMUSG00000027831	Veph1	2810471M23Rik|Veph	ventricular zone expressed PH domain-containing 1	protein-coding	0.015000	0.552239	
mm_161795.1	chr17	48400685	48400885	-	1	NA	NA	NA	-205	NM_001347401	18044	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	0.010000	0.398010	
mm_80539.1	chr9	80310618	80310818	+	1	NA	NA	NA	145684	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.000000	0.298507	5(GCTTTAAAATAC,+,0.00)
mm_137503.1	chr17	27017898	27018098	+	1	NA	NA	NA	-37	NM_001251881	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.045000	0.562189	
mm_105974.1	chr11	115514284	115514484	-	1	NA	NA	NA	-14	NM_008258	15374	Mm.1775	NM_008258	ENSMUSG00000020737	Hn1	-	hematological and neurological expressed sequence 1	protein-coding	0.055000	0.577114	-36(GGCTCTATAAAA,-,0.00),-34(CTCTATAAAATG,-,0.00)
mm_91747.1	chr10	49710536	49710736	-	1	NA	NA	NA	78118	NM_010349	14806	Mm.332838	NM_010349	ENSMUSG00000056073	Grik2	AW124492|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.000000	0.283582	
mm_84728.1	chr9	74927442	74927642	-	1	NA	NA	NA	-25511	NM_001113283	235493	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	0.020000	0.512438	
mm_122000.1	chr14	26669559	26669759	-	1	NA	NA	NA	-51	NR_106132	102465773		NR_106132	ENSMUSG00000098751	Mir7672	Gm27314|mmu-mir-7672	microRNA 7672	ncRNA	0.095000	0.641791	
mm_23003.1	chr3	34069298	34069498	+	1	NA	NA	NA	11956	NM_001286972	67713	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.010000	0.363184	
mm_123303.1	chr14	61656714	61656914	-	1	NA	NA	NA	-24704	NR_029733	387174		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0.005000	0.437811	
mm_133272.1	chr16	77375246	77375446	+	1	NA	NA	NA	46018	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.005000	0.313433	
mm_2774.1	chr1	130732019	130732219	+	1	NA	NA	NA	143	NM_177604	212439	Mm.268547	NM_177604	ENSMUSG00000042510	AA986860	E030025M07|Sarg	expressed sequence AA986860	protein-coding	0.025000	0.537313	
mm_167317.1	chr8	66386305	66386505	+	1	NA	NA	NA	104	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.005000	0.417910	
mm_8669.1	chr1	156669525	156669725	-	1	NA	NA	NA	4714	NM_023141	30935	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.020000	0.562189	
mm_44167.1	chr5	150764723	150764923	+	1	NA	NA	NA	90996	NM_001346503	100710	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	0.010000	0.338308	
mm_12600.1	chr2	74674997	74675197	+	1	NA	NA	NA	84	NM_008274	15432	Mm.57124	NM_008274	ENSMUSG00000001823	Hoxd12	Hox-4.7|Hox-5.6	homeobox D12	protein-coding	0.035000	0.517413	
mm_142131.1	chr17	35908816	35909016	-	1	NA	NA	NA	1152	NM_001142745	73242	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	0.035000	0.467662	
mm_171168.1	chr3	27642893	27643093	-	1	NA	NA	NA	-57998	NR_037275	100526525		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.025000	0.552239	
mm_123979.1	chr14	75180651	75180851	-	1	NA	NA	NA	44326	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.020000	0.517413	
mm_100380.1	chr11	119274796	119274996	+	1	NA	NA	NA	6933	NM_008064	14387	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.035000	0.626866	
mm_3985.1	chr1	164278015	164278215	+	1	NA	NA	NA	2517	NM_029115	74895	Mm.167258	NM_029115	ENSMUSG00000026578	Ccdc181	4930455F23Rik|AI427889	coiled-coil domain containing 181	protein-coding	0.020000	0.427861	41(GCTTTTAAAATC,+,0.00)
mm_128210.1	chr15	36140352	36140552	-	1	NA	NA	NA	-52	NM_001195748	626596	Mm.321798	NM_001195748	ENSMUSG00000037627	Rgs22	-	regulator of G-protein signalling 22	protein-coding	0.085000	0.736318	
mm_92537.1	chr10	79614073	79614273	-	1	NA	NA	NA	-148	NM_001168624	237397	Mm.334207	NM_198614	ENSMUSG00000045912	C2cd4c	4932409I22Rik|Fam148c|Gm238	C2 calcium-dependent domain containing 4C	protein-coding	0.035000	0.611940	
mm_18174.1	chr2	45110075	45110275	-	1	NA	NA	NA	102	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.110000	0.661692	
mm_9072.1	chr1	168369993	168370193	-	1	NA	NA	NA	62076	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.005000	0.348259	
mm_72207.1	chr8	72586076	72586276	+	1	NA	NA	NA	14073	NM_144534	74166	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	0.015000	0.552239	
mm_116742.1	chr13	51763354	51763554	-	1	NA	NA	NA	30293	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.020000	0.542289	
mm_102059.1	chr11	52253635	52253835	-	1	NA	NA	NA	21740	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.005000	0.557214	
mm_73951.1	chr8	120228396	120228596	+	1	NA	NA	NA	-266	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.180000	0.810945	
mm_85923.1	chr9	111523131	111523331	-	1	NA	NA	NA	84150	NM_172928	245038	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	0.040000	0.537313	
mm_5822.1	chr1	52727366	52727566	-	1	NA	NA	NA	-148	NM_133829	98682	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	0.095000	0.666667	
mm_168920.1	chr12	59066784	59066984	+	1	NA	NA	NA	-35	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.120000	0.681592	
mm_166646.1	chr6	85374335	85374535	-	1	NA	NA	NA	199	NM_177466	52055	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0.100000	0.696517	
mm_30403.1	chr3	152253028	152253228	-	1	NA	NA	NA	13192	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.005000	0.393035	
mm_21359.1	chr2	157129887	157130087	-	1	NA	NA	NA	5235	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.020000	0.393035	
mm_79761.1	chr9	62421218	62421418	+	1	NA	NA	NA	79975	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.050000	0.597015	
mm_124103.1	chr14	79300957	79301157	-	1	NA	NA	NA	578	NM_025427	66214	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	0.065000	0.611940	
mm_120255.1	chr14	63011657	63011857	+	1	NA	NA	NA	-14	NM_001039121	654458	Mm.390737	NM_001039121	ENSMUSG00000075572	Defb43	BD-43|EG654458|mBD-43	defensin beta 43	protein-coding	0.005000	0.512438	
mm_56563.1	chr6	101377161	101377361	-	1	NA	NA	NA	636	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.145000	0.706468	
mm_171577.1	chr4	147443291	147443491	+	1	NA	NA	NA	-109886	NM_001014397	433804	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154|OTTMUSG00000010673	zinc finger protein 985	protein-coding	0.100000	0.731343	
mm_20677.1	chr2	132385313	132385513	-	1	NA	NA	NA	34	NM_144944	246313	Mm.283777	NM_144944	ENSMUSG00000050558	Prokr2	B830005M06Rik|EG-VEGRF2|Gpcr73l1|Gpr73l1|PKR2	prokineticin receptor 2	protein-coding	0.070000	0.676617	
mm_137216.1	chr17	24169716	24169916	+	1	NA	NA	NA	-387	NM_009729	11984	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0.060000	0.537313	
mm_132015.1	chr16	25871183	25871383	+	1	NA	NA	NA	69367	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.005000	0.348259	
mm_125646.1	chr15	62250455	62250655	+	1	NA	NA	NA	-31104	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.005000	0.412935	
mm_154867.1	chrX	20678605	20678805	+	1	NA	NA	NA	-9249	NM_001310456	18555	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	0.025000	0.592040	
mm_141753.1	chr17	34261520	34261720	-	1	NA	NA	NA	-1607	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.005000	0.492537	
mm_109514.1	chr12	111454191	111454391	+	1	NA	NA	NA	11630	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.010000	0.487562	
mm_98357.1	chr11	93885804	93886004	+	1	NA	NA	NA	-138	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.065000	0.601990	
mm_42867.1	chr5	122232277	122232477	+	1	NA	NA	NA	22090	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.015000	0.452736	
mm_7027.1	chr1	87098791	87098991	-	1	NA	NA	NA	2715	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.070000	0.611940	
mm_112121.1	chr12	112860827	112861027	-	1	NA	NA	NA	-11	NM_019925	56696	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.020000	0.631841	
mm_81870.1	chr9	119052778	119052978	+	1	NA	NA	NA	100	NM_001164567	22351	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	0.035000	0.626866	
mm_87069.1	chr10	29144047	29144247	+	1	NA	NA	NA	151	NM_026138	67412	Mm.390264	NM_026138	ENSMUSG00000038916	Soga3	6330407J23Rik	SOGA family member 3	protein-coding	0.040000	0.582090	
mm_59547.1	chr7	28070847	28071047	+	1	NA	NA	NA	-289	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.025000	0.582090	17(GTCTCTATAAGG,-,0.00)
mm_85410.1	chr9	103424820	103425020	-	1	NA	NA	NA	1342	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.010000	0.517413	
mm_159976.1	chr6	113104923	113105123	+	1	NA	NA	NA	88	NM_173005	72895	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0.015000	0.507463	
mm_37631.1	chr4	127358006	127358206	-	1	NA	NA	NA	58	NM_010291	14622	Mm.26859	NM_010291	ENSMUSG00000042357	Gjb5	Cnx31.1|Cx31.1|Gjb-5	gap junction protein, beta 5	protein-coding	0.015000	0.562189	
mm_1769.1	chr1	77522277	77522477	+	1	NA	NA	NA	-7289	NM_007936	13838	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.020000	0.497512	
mm_85347.1	chr9	103208945	103209145	-	1	NA	NA	NA	-6980	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.005000	0.497512	
mm_160528.1	chr9	37621570	37621770	+	1	NA	NA	NA	7823	NM_011734	22619	Mm.196345	NM_011734	ENSMUSG00000001942	Siae	LSE|Ysg2	sialic acid acetylesterase	protein-coding	0.025000	0.472637	
mm_139652.1	chr17	57401055	57401255	+	1	NA	NA	NA	42469	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.477612	
mm_32628.1	chr4	114909746	114909946	+	1	NA	NA	NA	557	NR_030721	100040736	Mm.231287	NR_030721	ENSMUSG00000085399	Foxd2os	9130206I24Rik	forkhead box D2, opposite strand	ncRNA	0.035000	0.417910	
mm_11889.1	chr2	49743743	49743943	+	1	NA	NA	NA	-43843	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.020000	0.522388	
mm_137165.1	chr17	23807049	23807249	+	1	NA	NA	NA	3962	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.050000	0.606965	
mm_157795.1	chrX	73880678	73880878	-	1	NA	NA	NA	56	NM_008478	16728	Mm.260568	NM_008478	ENSMUSG00000031391	L1cam	CD171|L1|N-CAM-L1|NCAM-L1	L1 cell adhesion molecule	protein-coding	0.100000	0.706468	
mm_23552.1	chr3	62159000	62159200	+	1	NA	NA	NA	-179677	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	0.030000	0.522388	
mm_114892.1	chr13	94359360	94359560	+	1	NA	NA	NA	500	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.050000	0.567164	
mm_24503.1	chr3	92456727	92456927	+	1	NA	NA	NA	1893	NM_001204427	20766	Mm.57092	NM_011478	ENSMUSG00000045539	Sprr3	SPR3	small proline-rich protein 3	protein-coding	0.000000	0.547264	
mm_22942.1	chr3	31954695	31954895	+	1	NA	NA	NA	52092	NM_028231	72413	Mm.64790	NM_028231	ENSMUSG00000037610	Kcnmb2	2700049B16Rik|3110031N04Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 2	protein-coding	0.005000	0.447761	
mm_73860.1	chr8	118283656	118283856	+	1	NA	NA	NA	145	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.065000	0.572139	
mm_119661.1	chr14	52140956	52141156	+	1	NA	NA	NA	30153	NM_023879	77945	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	0.020000	0.522388	-1(GTTTTTAGAGTC,+,0.00)
mm_126135.1	chr15	78341950	78342150	+	1	NA	NA	NA	-6549	NR_106137	102465776		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0.015000	0.452736	
mm_15508.1	chr2	158257987	158258187	+	1	NA	NA	NA	-154	NM_177850	329547	Mm.260883	NM_177850	ENSMUSG00000052922	Bpi	9230105K17Rik|Bpifd1	bactericidal permeablility increasing protein	protein-coding	0.065000	0.671642	
mm_76202.1	chr8	83086808	83087008	-	1	NA	NA	NA	-78444	NM_001111304	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.035000	0.547264	
mm_14637.1	chr2	136781740	136781940	+	1	NA	NA	NA	68390	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.005000	0.373134	
mm_30987.1	chr4	35224307	35224507	+	1	NA	NA	NA	1473	NM_001081343	73205	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585	RIKEN cDNA 3110043O21 gene	protein-coding	0.005000	0.452736	
mm_32725.1	chr4	116557058	116557258	+	1	NA	NA	NA	-569	NM_029868	77110	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	0.070000	0.567164	
mm_107189.1	chr12	25098913	25099113	+	1	NA	NA	NA	-2921	NM_010496	15902	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.105000	0.651741	
mm_14445.1	chr2	130933054	130933254	+	1	NA	NA	NA	26659	NM_009730	11990	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	0.035000	0.502488	
mm_158263.1	chrX	109013366	109013566	-	1	NA	NA	NA	-86	NM_016710	50887	Mm.298443	NM_016710	ENSMUSG00000031245	Hmgn5	GARP45|NBP-45|Nsbp1	high-mobility group nucleosome binding domain 5	protein-coding	0.070000	0.557214	
mm_1972.1	chr1	86522574	86522774	+	1	NA	NA	NA	-4062	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.020000	0.597015	
mm_36129.1	chr4	59117738	59117938	-	1	NA	NA	NA	-71712	NM_011673	22234	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.040000	0.497512	
mm_159901.1	chr6	39419605	39419805	-	1	NA	NA	NA	71	NM_001311109	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.115000	0.661692	
mm_170004.1	chr1	71653031	71653231	-	1	NA	NA	NA	103	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.060000	0.641791	-74(TCCCATATAAGC,-,0.00)
mm_157716.1	chrX	69606190	69606390	-	1	NA	NA	NA	245959	NM_008032	14266	Mm.466576	NM_008032	ENSMUSG00000031189	Aff2	FMR2P|Fmr2|Ox19|Oxh	AF4/FMR2 family, member 2	protein-coding	0.035000	0.512438	
mm_92680.1	chr10	80586468	80586668	-	1	NA	NA	NA	3773	NM_145421	216169	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0.090000	0.666667	
mm_90857.1	chr10	8839677	8839877	-	1	NA	NA	NA	46293	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.005000	0.512438	
mm_74546.1	chr8	10483912	10484112	-	1	NA	NA	NA	330101	NM_001319151	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.005000	0.502488	
mm_28429.1	chr3	90464571	90464771	-	1	NA	NA	NA	1195	NM_008727	18160	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.045000	0.606965	-30(CCTCTTAGAGTC,+,0.00)
mm_148360.1	chr18	85697865	85698065	-	1	NA	NA	NA	-696987	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.025000	0.582090	
mm_476.1	chr1	36506760	36506960	+	1	NA	NA	NA	-5007	NM_001331209	94218	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	0.000000	0.378109	-6(TTTTTTAAACAC,+,0.00)
mm_72781.1	chr8	86745496	86745696	+	1	NA	NA	NA	-103	NR_027829	666945	Mm.391806	NR_027829		Gm10638	ENSMUSG00000074178	predicted gene 10638	ncRNA	0.155000	0.751244	
mm_28742.1	chr3	95738003	95738203	-	1	NA	NA	NA	1466	NM_007899	13601	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	0.015000	0.547264	
mm_56811.1	chr6	116668308	116668508	-	1	NA	NA	NA	5428	NM_178045	213391	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.015000	0.462687	
mm_37226.1	chr4	117929633	117929833	-	1	NA	NA	NA	30	NM_001284191	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.060000	0.631841	
mm_59622.1	chr7	28154478	28154678	+	1	NA	NA	NA	-15170	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.015000	0.567164	
mm_146480.1	chr18	89206003	89206203	+	1	NA	NA	NA	8676	NM_001039149	225825	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.000000	0.492537	
mm_141620.1	chr17	32877836	32878036	-	1	NA	NA	NA	13667	NM_207245	240066	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0.015000	0.477612	
mm_80305.1	chr9	73219353	73219553	+	1	NA	NA	NA	105984	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0.010000	0.417910	27(GCTTAAATAGAG,+,0.00)
mm_107311.1	chr12	31264178	31264378	+	1	NA	NA	NA	-1016	NM_008482	16777	Mm.172674	NM_008482	ENSMUSG00000002900	Lamb1	C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1	laminin B1	protein-coding	0.005000	0.477612	
mm_134977.1	chr16	32077983	32078183	-	1	NA	NA	NA	1259	NM_177326	224105	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 protein (Cdc42/Rac)-activated kinase 2	protein-coding	0.015000	0.353234	-74(TCTTATAAAGTA,+,0.00)
mm_118262.1	chr13	112463797	112463997	-	1	NA	NA	NA	-173	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.100000	0.641791	
mm_83428.1	chr9	44980347	44980547	-	1	NA	NA	NA	-16	NM_009850	12502	Mm.335106	NM_009850	ENSMUSG00000002033	Cd3g	Ctg-3|Ctg3|T3g	CD3 antigen, gamma polypeptide	protein-coding	0.010000	0.587065	
mm_23756.1	chr3	70007542	70007742	+	1	NA	NA	NA	29	NM_001018031	229389	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1	protein-coding	0.010000	0.457711	
mm_161846.1	chr18	9212871	9213071	+	1	NA	NA	NA	115	NM_008058	14370	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0.090000	0.641791	
mm_165904.1	chr4	49536714	49536914	-	1	NA	NA	NA	12732	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.015000	0.502488	
mm_88324.1	chr10	75566130	75566330	+	1	NA	NA	NA	-2432	NM_001305992	14598	Mm.4559	NM_008116	ENSMUSG00000006345	Ggt1	CD224|GGT|GGT 1|GGT-1|Ggtp|dwg	gamma-glutamyltransferase 1	protein-coding	0.015000	0.527363	
mm_18653.1	chr2	69781897	69782097	-	1	NA	NA	NA	7489	NM_001077684	75051	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding	0.030000	0.427861	
mm_85909.1	chr9	111056808	111057008	-	1	NA	NA	NA	336	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.020000	0.492537	
mm_96274.1	chr11	62846997	62847197	+	1	NA	NA	NA	-26	NM_001033669	213980	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	0.020000	0.457711	
mm_109145.1	chr12	107141463	107141663	+	1	NA	NA	NA	-425239	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.010000	0.407960	
mm_172473.1	chr7	44815177	44815377	+	1	NA	NA	NA	381	NM_030693	107503	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	0.040000	0.572139	
mm_27700.1	chr3	66981501	66981701	-	1	NA	NA	NA	170	NM_013665	20429	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0.065000	0.572139	
mm_127809.1	chr15	5045898	5046098	-	1	NA	NA	NA	17775	NM_001243837	109828	Mm.208034	NM_001243837	ENSMUSG00000079105	C7	A530026G17|Gm1238	complement component 7	protein-coding	0.010000	0.472637	
mm_154662.1	chrX	7873771	7873971	+	1	NA	NA	NA	-4435	NM_138606	18715	Mm.347478	NM_138606	ENSMUSG00000031155	Pim2	DXCch3|Pim-2	proviral integration site 2	protein-coding	0.010000	0.601990	
mm_134748.1	chr16	23108039	23108239	-	1	NA	NA	NA	671	NR_110335	13682	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0.085000	0.626866	
mm_73323.1	chr8	105271980	105272180	+	1	NA	NA	NA	2279	NM_001256044	26386	Mm.89204	NM_011939	ENSMUSG00000033249	Hsf4	HSF 4|HSTF 4|HSTF4|ldis1|mHSF4	heat shock transcription factor 4	protein-coding	0.015000	0.626866	
mm_11673.1	chr2	35292570	35292770	+	1	NA	NA	NA	10290	NM_146120	227753	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.025000	0.567164	
mm_69352.1	chr7	130266121	130266321	-	1	NA	NA	NA	587	NM_010207	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	0.180000	0.796020	
mm_135906.1	chr16	67278170	67278370	-	1	NA	NA	NA	342638	NM_001347247	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.000000	0.313433	
mm_119769.1	chr14	54174513	54174713	+	1	NA	NA	NA	79316	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.482587	
mm_154361.1	chrM	6270	6470	+	1	NA	NA	NA	NA	NA									0.025000	0.398010	
mm_21267.1	chr2	156839724	156839924	-	1	NA	NA	NA	-183	NM_001291124	228839	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0.050000	0.686567	
mm_140905.1	chr17	24150846	24151046	-	1	NA	NA	NA	-24	NM_001286662	18607	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	0.000000	0.522388	
mm_19730.1	chr2	104494289	104494489	-	1	NA	NA	NA	100	NM_010434	15259	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.150000	0.786070	
mm_13102.1	chr2	91312903	91313103	+	1	NA	NA	NA	47888	NM_023854	77038	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0.025000	0.522388	
mm_135477.1	chr16	45953484	45953684	-	1	NA	NA	NA	56829	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.005000	0.527363	45(GACCATAAAAAA,-,0.00)
mm_42523.1	chr5	115575078	115575278	+	1	NA	NA	NA	-5771	NR_105996	102466790		NR_105996	ENSMUSG00000099047	Mir7029	Gm27293|mmu-mir-7029	microRNA 7029	ncRNA	0.025000	0.621891	-21(CTCTTTAGAGAC,+,0.00)
mm_74495.1	chr8	5105232	5105432	-	1	NA	NA	NA	-45	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.020000	0.393035	51(GGGTTTAAAAGT,-,0.00)
mm_31551.1	chr4	56057690	56057890	+	1	NA	NA	NA	-525315	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.020000	0.467662	
mm_110879.1	chr12	74803870	74804070	-	1	NA	NA	NA	373362	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0.015000	0.407960	
mm_80078.1	chr9	70007063	70007263	+	1	NA	NA	NA	-5385	NM_001282084	235459	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	0.025000	0.462687	
mm_39266.1	chr5	3578115	3578315	+	1	NA	NA	NA	6499	NM_029843	77036	Mm.389069	NM_029843	ENSMUSG00000008307	1700109H08Rik	-	RIKEN cDNA 1700109H08 gene	protein-coding	0.005000	0.383085	
mm_13260.1	chr2	98666171	98666371	+	1	NA	NA	NA	1198614	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.010000	0.348259	
mm_24252.1	chr3	89177473	89177673	+	1	NA	NA	NA	182	NM_001309909	24045	Mm.257052	NM_011886	ENSMUSG00000028049	Scamp3	Sc3	secretory carrier membrane protein 3	protein-coding	0.075000	0.636816	
mm_118893.1	chr14	26634648	26634848	+	1	NA	NA	NA	-3449	NM_007479	11843	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.000000	0.363184	
mm_110984.1	chr12	77108458	77108658	-	1	NA	NA	NA	-129546	NM_001252614	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.025000	0.437811	-7(TTTTTTAAACAC,+,0.00)
mm_65460.1	chr7	25466311	25466511	-	1	NA	NA	NA	11214	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.015000	0.507463	
mm_132973.1	chr16	52032465	52032665	+	1	NA	NA	NA	1016	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.080000	0.532338	
mm_154977.1	chrX	37826909	37827109	+	1	NA	NA	NA	-46	NM_008955	19202	Mm.10105	NM_008955	ENSMUSG00000006200	Rhox6	AV213605|AW548842|Psx1	reproductive homeobox 6	protein-coding	0.065000	0.547264	
mm_141872.1	chr17	34836814	34837014	-	1	NA	NA	NA	-11	NM_019442	54402	Mm.440064	NM_019442	ENSMUSG00000061207	Stk19	G11|RP1	serine/threonine kinase 19	protein-coding	0.105000	0.616915	
mm_97295.1	chr11	76407083	76407283	+	1	NA	NA	NA	40	NM_019818	56322	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	0.070000	0.597015	
mm_79255.1	chr9	50751747	50751947	+	1	NA	NA	NA	507	NM_001164708	69253	Mm.1980	NM_024441	ENSMUSG00000038086	Hspb2	27kDa|2810021G24Rik|HSP27|MKBP	heat shock protein 2	protein-coding	0.020000	0.547264	
mm_55732.1	chr6	77349416	77349616	-	1	NA	NA	NA	32959	NR_045141	70753	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	0.005000	0.402985	
mm_131411.1	chr16	14473533	14473733	+	1	NA	NA	NA	-88684	NR_033556	545280	Mm.123679	NR_033556	ENSMUSG00000075395	A630010A05Rik	-	RIKEN cDNA A630010A05 gene	ncRNA	0.015000	0.492537	
mm_71700.1	chr8	61742464	61742664	+	1	NA	NA	NA	17534	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.015000	0.437811	
mm_136544.1	chr16	97962092	97962292	-	1	NA	NA	NA	430	NM_001081685	114565	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0.115000	0.726368	
mm_57612.1	chr6	128126589	128126789	-	1	NA	NA	NA	16889	NM_175414	109246	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597	tetraspanin 9	protein-coding	0.000000	0.477612	
mm_131140.1	chr16	6348651	6348851	+	1	NA	NA	NA	373164	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA	0.055000	0.592040	
mm_158527.1	chrX	143861055	143861255	-	1	NA	NA	NA	-33743	NM_007603	12338	Mm.30290	NM_007603	ENSMUSG00000067276	Capn6	-	calpain 6	protein-coding	0.005000	0.303483	13(CTTTATATACAG,+,0.00)
mm_79152.1	chr9	47740058	47740258	+	1	NA	NA	NA	78050	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.015000	0.348259	
mm_67366.1	chr7	79839376	79839576	-	1	NA	NA	NA	2876	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.015000	0.502488	
mm_50001.1	chr6	41048253	41048453	+	1	NA	NA	NA	-12844	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.457711	
mm_20726.1	chr2	136511939	136512139	-	1	NA	NA	NA	-20282	NM_175667	319196	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0.005000	0.512438	
mm_119083.1	chr14	30886427	30886627	+	1	NA	NA	NA	51	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.020000	0.577114	
mm_100047.1	chr11	115163279	115163479	+	1	NA	NA	NA	38	NM_012030	26941	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0.115000	0.701493	
mm_151474.1	chr19	58673051	58673251	+	1	NA	NA	NA	2786	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.030000	0.427861	
mm_118903.1	chr14	26655825	26656025	+	1	NA	NA	NA	13683	NR_106132	102465773		NR_106132	ENSMUSG00000098751	Mir7672	Gm27314|mmu-mir-7672	microRNA 7672	ncRNA	0.005000	0.373134	
mm_131517.1	chr16	17531073	17531273	+	1	NA	NA	NA	-121	NM_026909	69009	Mm.10174	NM_026909	ENSMUSG00000022760	Thap7	1810004B07Rik	THAP domain containing 7	protein-coding	0.095000	0.636816	
mm_38369.1	chr4	138367887	138368087	-	1	NA	NA	NA	-32	NM_028176	72269	Mm.46182	NM_028176	ENSMUSG00000028755	Cda	2210401N16Rik	cytidine deaminase	protein-coding	0.065000	0.696517	
mm_129616.1	chr15	80013904	80014104	-	1	NA	NA	NA	804	NM_011057	18591	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.120000	0.741294	
mm_136641.1	chr17	5799569	5799769	+	1	NA	NA	NA	179	NR_045080	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.035000	0.517413	
mm_164819.1	chr18	35034045	35034245	+	1	NA	NA	NA	-79794	NM_010481	15526	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.015000	0.577114	
mm_21998.1	chr2	167743801	167744001	-	1	NA	NA	NA	52724	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.005000	0.512438	
mm_26327.1	chr3	142541463	142541663	+	1	NA	NA	NA	11227	NM_145545	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.020000	0.422886	
mm_98146.1	chr11	87583844	87584044	+	1	NA	NA	NA	2883	NM_001284392	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding	0.010000	0.527363	
mm_32080.1	chr4	98114733	98114933	+	1	NA	NA	NA	268432	NM_053157	94043	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.015000	0.353234	1(ACTTTTAAAGTA,+,0.00)
mm_24860.1	chr3	95893864	95894064	+	1	NA	NA	NA	43	NM_146134	226548	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	0.080000	0.666667	
mm_140762.1	chr17	17624346	17624546	-	1	NA	NA	NA	43	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.095000	0.681592	
mm_142969.1	chr17	56133670	56133870	-	1	NA	NA	NA	82	NM_013662	20359	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0.010000	0.552239	
mm_51026.1	chr6	65150704	65150904	+	1	NA	NA	NA	-6074	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.050000	0.557214	
mm_39447.1	chr5	17574360	17574560	+	1	NA	NA	NA	-356	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.060000	0.582090	-33(GCTTTTCAAGAG,+,0.00)
mm_89466.1	chr10	93453336	93453536	+	1	NA	NA	NA	40	NM_008517	16993	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	0.080000	0.641791	
mm_44054.1	chr5	147959264	147959464	+	1	NA	NA	NA	2044	NM_029920	77521	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	0.020000	0.467662	
mm_148426.1	chr19	3941494	3941694	+	1	NA	NA	NA	6408	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.010000	0.537313	
mm_70725.1	chr8	18595035	18595235	+	1	NA	NA	NA	-38	NM_173189	244329	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT	microcephaly, primary autosomal recessive 1	protein-coding	0.105000	0.736318	
mm_103619.1	chr11	78656967	78657167	-	1	NA	NA	NA	40358	NM_008702	18099	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0.005000	0.338308	
mm_112614.1	chr13	15463587	15463787	+	1	NA	NA	NA	-36	NM_008130	14634	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0.100000	0.641791	
mm_54665.1	chr6	39206577	39206777	-	1	NA	NA	NA	96	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.150000	0.766169	
mm_169030.1	chr13	119755971	119756171	+	1	NA	NA	NA	-189	NM_175538	245269	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0.035000	0.606965	
mm_150154.1	chr19	31950963	31951163	+	1	NA	NA	NA	82302	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.015000	0.402985	
mm_69288.1	chr7	128205923	128206123	-	1	NA	NA	NA	343	NM_009943	12862	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	0.035000	0.577114	
mm_128959.1	chr15	74799764	74799964	-	1	NA	NA	NA	104	NM_029627	76486	Mm.273319	NM_029627	ENSMUSG00000044678	Ly6k	2410015A16Rik|3110035B01Rik|mLy-6K	lymphocyte antigen 6 complex, locus K	protein-coding	0.070000	0.641791	
mm_114240.1	chr13	56614164	56614364	+	1	NA	NA	NA	4661	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.020000	0.497512	
mm_160926.1	chr11	87404933	87405133	+	1	NA	NA	NA	-32	NM_031386	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.100000	0.691542	
mm_39564.1	chr5	23314251	23314451	+	1	NA	NA	NA	120002	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.005000	0.407960	
mm_81309.1	chr9	108374266	108374466	+	1	NA	NA	NA	-18468	NM_053216	112418	Mm.78287	NM_053216	ENSMUSG00000032611	1700102P08Rik	AI593206	RIKEN cDNA 1700102P08 gene	protein-coding	0.010000	0.407960	
mm_109156.1	chr12	108179034	108179234	+	1	NA	NA	NA	150	NM_028262	52690	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0.145000	0.751244	
mm_46544.1	chr5	106457849	106458049	-	1	NA	NA	NA	217	NM_001005477	104382	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH-like 2 (Drosophila)	protein-coding	0.050000	0.452736	-7(TTTTTTAAAGCA,+,0.00)
mm_38660.1	chr4	144403531	144403731	-	1	NA	NA	NA	4833	NM_029948	77632	Mm.31283	NM_029948	ENSMUSG00000028591	Pramef12	4930569K13Rik|AU023001|C86578	PRAME family member 12	protein-coding	0.005000	0.567164	-94(CCTTTTATACTG,+,0.00)
mm_12564.1	chr2	72828785	72828985	+	1	NA	NA	NA	-15168	NR_102349	76218	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0.005000	0.547264	
mm_25524.1	chr3	114117913	114118113	+	1	NA	NA	NA	87473	NM_007729	12814	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding	0.005000	0.298507	
mm_168382.1	chr11	23268885	23269085	+	1	NA	NA	NA	12944	NM_134014	103573	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.010000	0.427861	
mm_28862.1	chr3	97297720	97297920	-	1	NA	NA	NA	-11436	NR_105813	102465206		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	0.005000	0.462687	
mm_16190.1	chr2	172977674	172977874	+	1	NA	NA	NA	-2068	NM_012046	26972	Mm.23495	NM_012046	ENSMUSG00000005883	Spo11	AI449549|Spo11a|Spo11b	SPO11 meiotic protein covalently bound to DSB	protein-coding	0.010000	0.517413	50(GGACATAAAAGG,-,0.00)
mm_119992.1	chr14	55591655	55591855	+	1	NA	NA	NA	-35	NM_194346	268749	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0.065000	0.666667	
mm_150782.1	chr19	44294935	44295135	+	1	NA	NA	NA	1359	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.025000	0.542289	
mm_150856.1	chr19	45006545	45006745	+	1	NA	NA	NA	87	NM_153796	226153	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	0.065000	0.636816	
mm_3531.1	chr1	150179823	150180023	+	1	NA	NA	NA	-14975	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.000000	0.333333	-46(GGGCATAAAAGG,-,0.00)
mm_5219.1	chr1	13898369	13898569	-	1	NA	NA	NA	-111540	NR_004447	433273	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.005000	0.462687	
mm_75828.1	chr8	70506031	70506231	-	1	NA	NA	NA	608	NM_025577	66462	Mm.28242	NM_025577	ENSMUSG00000058833	2810428I15Rik	-	RIKEN cDNA 2810428I15 gene	protein-coding	0.030000	0.552239	
mm_39900.1	chr5	31240814	31241014	+	1	NA	NA	NA	-4	NM_147201	192292	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	0.125000	0.736318	
mm_31226.1	chr4	44106448	44106648	+	1	NA	NA	NA	-15345	NR_040414	623796	Mm.490409	NR_040414	ENSMUSG00000084274	Gm12504	OTTMUSG00000007209	prothymosin alpha pseudogene	pseudo	0.010000	0.507463	
mm_143019.1	chr17	56512328	56512528	-	1	NA	NA	NA	55	NM_011483	20834	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	0.085000	0.666667	
mm_140639.1	chr17	12674705	12674905	-	1	NA	NA	NA	1033	NM_009202	20517	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.005000	0.527363	
mm_4557.1	chr1	177444637	177444837	+	1	NA	NA	NA	76	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.015000	0.462687	
mm_165566.1	chr3	16597780	16597980	+	1	NA	NA	NA	414697	NM_001145919	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.000000	0.422886	76(GCTTCTTAAAGG,-,0.00),77(CTTCTTAAAGGC,+,0.00)
mm_3163.1	chr1	135232788	135232988	+	1	NA	NA	NA	25584	NM_001163131	13710	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0.015000	0.417910	
mm_152210.1	chr19	7802575	7802775	-	1	NA	NA	NA	-8	NM_146232	236149	Mm.207060	NM_146232	ENSMUSG00000053303	Slc22a26	-	solute carrier family 22 (organic cation transporter), member 26	protein-coding	0.000000	0.388060	
mm_169199.1	chr13	66291284	66291484	-	1	NA	NA	NA	149734	NM_183119	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.020000	0.532338	
mm_25991.1	chr3	134200047	134200247	+	1	NA	NA	NA	-36348	NM_001004367	319478	Mm.224814	NM_001004367	ENSMUSG00000044365	Cxxc4	9330210J02Rik|C030003J12Rik|Idax	CXXC finger 4	protein-coding	0.010000	0.487562	
mm_109236.1	chr12	108865355	108865555	+	1	NA	NA	NA	14326	NM_001012310	104910	Mm.202653	NM_001012310	ENSMUSG00000048856	Slc25a47	AI132487|AI876593|HDMCP	solute carrier family 25, member 47	protein-coding	0.010000	0.567164	
mm_68705.1	chr7	119760717	119760917	-	1	NA	NA	NA	-106	NM_212441	20216	Mm.334199	NM_016870	ENSMUSG00000030935	Acsm3	Sa|Sah	acyl-CoA synthetase medium-chain family member 3	protein-coding	0.020000	0.462687	
mm_82417.1	chr9	14902466	14902666	-	1	NA	NA	NA	1385	NM_176807	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.000000	0.552239	
mm_65031.1	chr7	18532134	18532334	-	1	NA	NA	NA	-7	NM_054060	114868	Mm.389809	NM_054060	ENSMUSG00000070798	Psg25	cea13	pregnancy-specific glycoprotein 25	protein-coding	0.005000	0.457711	
mm_53692.1	chr6	142683367	142683567	+	1	NA	NA	NA	18807	NM_021041	20928	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0.010000	0.368159	
mm_1749.1	chr1	75505644	75505844	+	1	NA	NA	NA	708	NM_178884	98733	Mm.236454	NM_178884	ENSMUSG00000026211	Obsl1	AW822216	obscurin-like 1	protein-coding	0.075000	0.671642	
mm_111008.1	chr12	78980495	78980695	-	1	NA	NA	NA	2883	NM_001170401	268567	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.010000	0.567164	
mm_45062.1	chr5	43043957	43044157	-	1	NA	NA	NA	-189406	NM_175937	231207	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.015000	0.427861	
mm_86150.1	chr9	117252370	117252570	-	1	NA	NA	NA	13	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.020000	0.502488	
mm_43510.1	chr5	137030183	137030383	+	1	NA	NA	NA	-12	NM_001039385	381677	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	0.095000	0.646766	-34(CCCTTTATAAGG,+,0.00),-34(CCCTTTATAAGG,-,0.00),-32(CTTTATAAGGCA,+,0.00)
mm_129623.1	chr15	80088800	80089000	-	1	NA	NA	NA	-2434	NM_009303	20972	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0.000000	0.333333	
mm_162427.1	chr1	93343587	93343787	+	1	NA	NA	NA	42	NM_023200	66385	Mm.88704	NM_023200	ENSMUSG00000026275	Ppp1r7	2310014J01Rik|SDS22	protein phosphatase 1, regulatory (inhibitor) subunit 7	protein-coding	0.085000	0.646766	
mm_38991.1	chr4	151108400	151108600	-	1	NA	NA	NA	18930	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	0.145000	0.771144	
mm_22722.1	chr3	19508552	19508752	+	1	NA	NA	NA	57	NM_025489	66326	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0.010000	0.462687	
mm_142051.1	chr17	35637755	35637955	-	1	NA	NA	NA	5840	NM_001033366	268949	Mm.296301	NM_001033366	ENSMUSG00000073408	Dpcr1	Gm630	diffuse panbronchiolitis critical region 1 (human)	protein-coding	0.030000	0.472637	
mm_97782.1	chr11	82388822	82389022	+	1	NA	NA	NA	22	NM_001304439	270893	Mm.341593	NM_023438	ENSMUSG00000020701	Tmem132e	Gm644	transmembrane protein 132E	protein-coding	0.090000	0.686567	
mm_101376.1	chr11	23770838	23771038	-	1	NA	NA	NA	32	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.105000	0.721393	
mm_19027.1	chr2	76968389	76968589	-	1	NA	NA	NA	14058	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.030000	0.472637	
mm_144773.1	chr18	35828761	35828961	+	1	NA	NA	NA	-957	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.000000	0.502488	
mm_40887.1	chr5	74979792	74979992	+	1	NA	NA	NA	30698	NR_045866	619945	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.025000	0.542289	
mm_122455.1	chr14	45318468	45318668	-	1	NA	NA	NA	4	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.180000	0.815920	
mm_92942.1	chr10	85003553	85003753	-	1	NA	NA	NA	86040	NM_183172	237422	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0.015000	0.422886	
mm_61155.1	chr7	58658326	58658526	+	1	NA	NA	NA	224	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.155000	0.756219	
mm_50886.1	chr6	56714737	56714937	+	1	NA	NA	NA	-68	NM_030235	78937	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	0.075000	0.691542	-33(TCCTTTAGACCC,+,0.00)
mm_29568.1	chr3	116968531	116968731	-	1	NA	NA	NA	321	NM_023245	114301	Mm.253736	NM_023245	ENSMUSG00000033377	Palmd	4631423C22Rik|PALML	palmdelphin	protein-coding	0.035000	0.527363	
mm_161714.1	chr17	25497005	25497205	-	1	NA	NA	NA	183	NM_011425	20609	Mm.353282	NM_011425	ENSMUSG00000050824	Sstr5	Smstr5|sst5	somatostatin receptor 5	protein-coding	0.085000	0.686567	
mm_154347.1	chrM	5627	5827	+	1	NA	NA	NA	NA	NA									0.005000	0.422886	
mm_53953.1	chr6	5298303	5298503	-	1	NA	NA	NA	-30	NM_183308	330260	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	0.125000	0.726368	
mm_27403.1	chr3	51277378	51277578	-	1	NA	NA	NA	36	NM_001291062	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.155000	0.776119	
mm_129644.1	chr15	80565041	80565241	-	1	NA	NA	NA	-4671	NM_001163189	383075	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	0.035000	0.597015	
mm_70847.1	chr8	23446799	23446999	+	1	NA	NA	NA	35397	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding	0.030000	0.452736	
mm_155165.1	chrX	53008578	53008778	+	1	NA	NA	NA	20600	NM_013556	15452	Mm.299381	NM_013556	ENSMUSG00000025630	Hprt	C81579|HPGRT|Hprt1	hypoxanthine guanine phosphoribosyl transferase	protein-coding	0.005000	0.303483	
mm_76436.1	chr8	84985973	84986173	-	1	NA	NA	NA	-4522	NM_133255	170833	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	0.110000	0.691542	
mm_154235.1	chr19	60575709	60575909	-	1	NA	NA	NA	5214	NM_001172097	78832	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	0.000000	0.333333	
mm_47071.1	chr5	116544950	116545150	-	1	NA	NA	NA	46767	NM_026886	68955	Mm.146779	NM_026886	ENSMUSG00000063919	Srrm4	1500001A10Rik|B230202K19Rik|bv|mKIAA1853|nSR100	serine/arginine repetitive matrix 4	protein-coding	0.000000	0.497512	
mm_55469.1	chr6	68755534	68755734	-	1	NA	NA	NA	571540	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.388060	-95(GGATTTATAAGC,-,0.00)
mm_106589.1	chr11	120729718	120729918	-	1	NA	NA	NA	2203	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.020000	0.587065	
mm_156026.1	chrX	107149493	107149693	+	1	NA	NA	NA	-22	NM_175442	213438	Mm.265244	NM_175442	ENSMUSG00000054293	A630033H20Rik	AI662791|P2ry10	RIKEN cDNA A630033H20 gene	protein-coding	0.010000	0.373134	
mm_168462.1	chr11	45725947	45726147	+	1	NA	NA	NA	-82036	NR_045876	100009664	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.065000	0.646766	
mm_45279.1	chr5	64898926	64899126	-	1	NA	NA	NA	33673	NM_030682	21897	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.010000	0.442786	
mm_150924.1	chr19	46152445	46152645	+	1	NA	NA	NA	-13	NM_178930	107338	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	0.055000	0.601990	
mm_150283.1	chr19	34292304	34292504	+	1	NA	NA	NA	1745	NM_001146708	14102	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	0.005000	0.432836	
mm_87907.1	chr10	62252952	62253152	+	1	NA	NA	NA	614	NM_009314	21337	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0.025000	0.522388	
mm_60190.1	chr7	43408099	43408299	+	1	NA	NA	NA	-81	NM_172900	243958	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0.005000	0.492537	
mm_170844.1	chr2	177464653	177464853	+	1	NA	NA	NA	11	NM_001177568	628308	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420|OTTMUSG00000016588	zinc finger protein 970	protein-coding	0.010000	0.487562	
mm_45815.1	chr5	87677975	87678175	-	1	NA	NA	NA	11867	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.005000	0.323383	34(CTGTATTAAAGA,-,0.00)
mm_145469.1	chr18	60299907	60300107	+	1	NA	NA	NA	6627	NM_001101475	240328	Mm.329461	NM_001101475	ENSMUSG00000090942	F830016B08Rik	Ifgga4	RIKEN cDNA F830016B08 gene	protein-coding	0.005000	0.318408	
mm_111299.1	chr12	85485861	85486061	-	1	NA	NA	NA	12060	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.055000	0.641791	
mm_86907.1	chr10	22645029	22645229	+	1	NA	NA	NA	118	NM_178934	353169	Mm.473705	NM_178934	ENSMUSG00000037490	Slc2a12	GLUT-12|Glut12	solute carrier family 2 (facilitated glucose transporter), member 12	protein-coding	0.040000	0.567164	
mm_19868.1	chr2	114047314	114047514	-	1	NA	NA	NA	5461	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.010000	0.432836	
mm_2743.1	chr1	128591184	128591384	+	1	NA	NA	NA	1015	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.075000	0.552239	
mm_128610.1	chr15	58823367	58823567	-	1	NA	NA	NA	-40	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.160000	0.776119	
mm_115209.1	chr13	109260272	109260472	+	1	NA	NA	NA	-64372	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.050000	0.577114	
mm_141300.1	chr17	28080211	28080411	-	1	NA	NA	NA	273	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.070000	0.671642	
mm_386.1	chr1	34077136	34077336	+	1	NA	NA	NA	-40123	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.020000	0.502488	-89(TTGTTTAAAAGG,-,0.00)
mm_78323.1	chr9	24625096	24625296	+	1	NA	NA	NA	-8	NM_001039944	664726	Mm.437189	NM_001039944		Cypt10	-	cysteine-rich perinuclear theca 10	protein-coding	0.025000	0.582090	
mm_99845.1	chr11	109361937	109362137	+	1	NA	NA	NA	-757	NM_010303	14674	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0.025000	0.507463	
mm_73538.1	chr8	108703766	108703966	+	1	NA	NA	NA	-10778	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.140000	0.766169	
mm_121938.1	chr14	24004409	24004609	-	1	NA	NA	NA	-304	NM_001253374	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.180000	0.830846	
mm_88987.1	chr10	81565450	81565650	+	1	NA	NA	NA	6106	NM_001276288	14797	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.030000	0.671642	
mm_159347.1	chr3	63773440	63773640	-	1	NA	NA	NA	77451	NM_001177733	269437	Mm.316391	NM_183191	ENSMUSG00000036834	Plch1	BC042549|PLC-eta-1|PLCeta1|Plcl3	phospholipase C, eta 1	protein-coding	0.020000	0.363184	
mm_124184.1	chr14	94086074	94086274	-	1	NA	NA	NA	-195495	NM_001346722	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.293532	24(CTTTATAGACAC,+,0.00)
mm_82424.1	chr9	14903816	14904016	-	1	NA	NA	NA	35	NM_176807	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.005000	0.482587	
mm_133380.1	chr16	84714887	84715087	+	1	NA	NA	NA	847	NR_029565	387173		NR_029565	ENSMUSG00000065397	Mir155	Mirn155|mir-155|mmu-mir-155	microRNA 155	ncRNA	0.005000	0.298507	
mm_83979.1	chr9	57265690	57265890	-	1	NA	NA	NA	-3191	NM_028820	74211	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.000000	0.497512	
mm_18979.1	chr2	76848912	76849112	-	1	NA	NA	NA	133535	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.010000	0.402985	
mm_169159.1	chr13	65348492	65348692	-	1	NA	NA	NA	69738	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.020000	0.537313	
mm_63933.1	chr7	139538025	139538225	+	1	NA	NA	NA	44672	NM_183248	14912	Mm.28308	NM_183248	ENSMUSG00000041309	Nkx6-2	Gtx|Nkx6.2	NK6 homeobox 2	protein-coding	0.030000	0.482587	
mm_13063.1	chr2	91115438	91115638	+	1	NA	NA	NA	-2606	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.075000	0.726368	
mm_143241.1	chr17	63500536	63500736	-	1	NA	NA	NA	-56	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.070000	0.636816	
mm_160034.1	chr6	132656811	132657011	+	1	NA	NA	NA	-46	NM_207023	387348	Mm.377910	NM_207023	ENSMUSG00000059382	Tas2r120	T2R20|Tas2r20|mGR20|mt2r47	taste receptor, type 2, member 120	protein-coding	0.000000	0.293532	
mm_19428.1	chr2	91935708	91935908	-	1	NA	NA	NA	-3511	NM_010784	17242	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.010000	0.641791	
mm_33994.1	chr4	137905043	137905243	+	1	NA	NA	NA	42906	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.020000	0.452736	
mm_5483.1	chr1	36800013	36800213	-	1	NA	NA	NA	21129	NM_001289612	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.000000	0.412935	
mm_169218.1	chr13	66729730	66729930	+	1	NA	NA	NA	175520	NM_026219	67530	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	0.015000	0.527363	-37(GTGCATATAAGC,-,0.00)
mm_30470.1	chr3	154594096	154594296	-	1	NA	NA	NA	-2515	NM_009968	12972	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	0.025000	0.542289	
mm_115027.1	chr13	99184644	99184844	+	1	NA	NA	NA	-79	NM_001004149	238803	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.025000	0.502488	
mm_48296.1	chr5	138255471	138255671	-	1	NA	NA	NA	89	NM_001081108	66096	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	0.065000	0.532338	
mm_161997.1	chr19	39006920	39007120	+	1	NA	NA	NA	1	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.000000	0.502488	-33(CATTATAAAAGC,-,0.00)
mm_16305.1	chr2	174289720	174289920	+	1	NA	NA	NA	5500	NM_022000	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.015000	0.487562	
mm_17282.1	chr2	26138177	26138377	-	1	NA	NA	NA	1266	NM_001256522	109299	Mm.389259	NM_001256521		C330006A16Rik	AI551216	RIKEN cDNA C330006A16 gene	protein-coding	0.005000	0.492537	
mm_110400.1	chr12	44210082	44210282	-	1	NA	NA	NA	-114	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.110000	0.626866	76(GGCTCTATAAGC,-,0.00)
mm_89723.1	chr10	98915087	98915287	+	1	NA	NA	NA	35	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.155000	0.800995	
mm_81071.1	chr9	106206697	106206897	+	1	NA	NA	NA	3689	NM_011876	23999	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	0.000000	0.512438	
mm_116080.1	chr13	28419901	28420101	-	1	NA	NA	NA	277517	NM_023746	28078	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0.055000	0.567164	
mm_165810.1	chr3	145758600	145758800	+	1	NA	NA	NA	8	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.130000	0.756219	
mm_132206.1	chr16	32608748	32608948	+	1	NA	NA	NA	-48	NM_011638	22042	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0.120000	0.686567	-37(CCTTTTCTAGGC,+,0.00)
mm_30993.1	chr4	38263774	38263974	+	1	NA	NA	NA	-1186419	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0.010000	0.373134	-23(CCTTTAAAATCA,+,0.00)
mm_77532.1	chr8	123023527	123023727	-	1	NA	NA	NA	18657	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.005000	0.298507	
mm_97475.1	chr11	78323000	78323200	+	1	NA	NA	NA	27	NM_001303423	11676	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0.045000	0.611940	
mm_170951.1	chr2	53696754	53696954	-	1	NA	NA	NA	388698	NM_023396	67874	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	0.010000	0.353234	
mm_143785.1	chr17	81731155	81731355	-	1	NA	NA	NA	7132	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.353234	
mm_33460.1	chr4	130792490	130792690	+	1	NA	NA	NA	53	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.215000	0.825871	
mm_130879.1	chr15	102246250	102246450	-	1	NA	NA	NA	150	NM_001042727	19411	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.055000	0.691542	
mm_159465.1	chr4	3872000	3872200	-	1	NA	NA	NA	5	NM_020021	17451	Mm.459300	NM_020021	ENSMUSG00000078365	Mos	c-mos	Moloney sarcoma oncogene	protein-coding	0.015000	0.427861	
mm_136725.1	chr17	8236013	8236213	+	1	NA	NA	NA	70	NM_001190333	12458	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	0.015000	0.527363	
mm_83608.1	chr9	48605010	48605210	-	1	NA	NA	NA	13	NM_001311062	18113	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0.010000	0.512438	
mm_114544.1	chr13	73829799	73829999	+	1	NA	NA	NA	17732	NM_028186	72293	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2 homolog (Drosophila)	protein-coding	0.020000	0.452736	
mm_808.1	chr1	45402000	45402200	+	1	NA	NA	NA	90562	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.000000	0.373134	-72(TACTTTTAAAAG,-,0.00),-71(ACTTTTAAAAGC,-,0.00),-70(CTTTTAAAAGCA,+,0.00)
mm_102786.1	chr11	68400996	68401196	-	1	NA	NA	NA	-14270	NM_008744	18208	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0.025000	0.467662	
mm_96715.1	chr11	69664116	69664316	+	1	NA	NA	NA	1173	NR_035455	100316840		NR_035455	ENSMUSG00000088752	Mir1934	mir-1934|mmu-mir-1934	microRNA 1934	ncRNA	0.010000	0.407960	
mm_31928.1	chr4	85514257	85514457	+	1	NA	NA	NA	308901	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.090000	0.711443	
mm_6111.1	chr1	64107091	64107291	-	1	NA	NA	NA	14198	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.000000	0.323383	
mm_153742.1	chr19	44696786	44696986	-	1	NA	NA	NA	-60508	NM_011037	18504	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0.035000	0.547264	
mm_153242.1	chr19	36119193	36119393	-	1	NA	NA	NA	551	NM_013468	107765	Mm.10279	NM_013468	ENSMUSG00000024803	Ankrd1	Alrp|CARP|Crap|MARP1	ankyrin repeat domain 1 (cardiac muscle)	protein-coding	0.030000	0.527363	
mm_155847.1	chrX	101273929	101274129	+	1	NA	NA	NA	-62	NM_021521	59024	Mm.20873	NM_021521	ENSMUSG00000079487	Med12	230kDa|Mopa|OPA-1|Tnrc11|Trap230	mediator complex subunit 12	protein-coding	0.085000	0.641791	
mm_170344.1	chr1	85011989	85012189	+	1	NA	NA	NA	-77006	NM_027921	71781	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.020000	0.532338	
mm_127013.1	chr15	95864005	95864205	+	1	NA	NA	NA	73262	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.035000	0.502488	
mm_63432.1	chr7	127478855	127479055	+	1	NA	NA	NA	-6266	NM_010183	14123	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.090000	0.701493	-64(TCGTCTTAAAGG,-,0.00),-61(TCTTAAAGGGGC,+,0.00),-26(TCGCCTTAAAGG,-,0.00),-25(CGCCTTAAAGGG,-,0.00),-23(CCTTAAAGGGAC,+,0.00)
mm_68929.1	chr7	126492208	126492408	-	1	NA	NA	NA	4953	NM_001163713	233870	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	0.025000	0.597015	
mm_38488.1	chr4	140814053	140814253	-	1	NA	NA	NA	3160	NR_045944	100049161	Mm.20854	NR_045944	ENSMUSG00000085918	Gm13032	OTTMUSG00000010086	predicted gene 13032	ncRNA	0.030000	0.537313	
mm_18245.1	chr2	52189563	52189763	-	1	NA	NA	NA	-101339	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.025000	0.452736	
mm_33027.1	chr4	122673692	122673892	+	1	NA	NA	NA	-15467	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	0.015000	0.457711	
mm_5552.1	chr1	38664828	38665028	-	1	NA	NA	NA	-37684	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.030000	0.472637	
mm_56597.1	chr6	108659713	108659913	-	1	NA	NA	NA	-816	NM_011498	20893	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0.100000	0.746269	
mm_46925.1	chr5	114669992	114670192	-	1	NA	NA	NA	-11671	NM_022017	63873	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.030000	0.532338	
mm_19886.1	chr2	114050262	114050462	-	1	NA	NA	NA	2513	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.025000	0.562189	
mm_137359.1	chr17	25366196	25366396	+	1	NA	NA	NA	-37	NM_010781	17229	Mm.7409	NM_010781	ENSMUSG00000033825	Tpsb2	AV011504|MMCP-6|Mcp-6|Mcp6|Mcpt6	tryptase beta 2	protein-coding	0.005000	0.477612	
mm_135040.1	chr16	32877601	32877801	-	1	NA	NA	NA	-83	NM_027226	69823	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	0.150000	0.756219	
mm_120322.1	chr14	63142850	63143050	+	1	NA	NA	NA	20488	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.417910	
mm_81568.1	chr9	110420014	110420214	+	1	NA	NA	NA	306	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.020000	0.517413	
mm_104091.1	chr11	86648138	86648338	-	1	NA	NA	NA	-7833	NR_106195	102465902		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	0.025000	0.442786	
mm_7601.1	chr1	126090378	126090578	-	1	NA	NA	NA	-177550	NM_001311089	72585	Mm.490405	NM_145100	ENSMUSG00000026344	Lypd1	2700050C12Rik|AI853408|C530008O16Rik|Lynx2|Lypdc1	Ly6/Plaur domain containing 1	protein-coding	0.015000	0.472637	
mm_101919.1	chr11	50200627	50200827	-	1	NA	NA	NA	10093	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.015000	0.492537	62(CCTTTTCAGGCA,+,0.00)
mm_106383.1	chr11	118495404	118495604	-	1	NA	NA	NA	18544	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.000000	0.532338	-28(TCTTAAATAGTG,+,0.00)
mm_132985.1	chr16	52206718	52206918	+	1	NA	NA	NA	175269	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.000000	0.442786	62(GAATTTAAAAGC,-,0.00)
mm_93382.1	chr10	105574327	105574527	-	1	NA	NA	NA	52	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.070000	0.656716	
mm_156284.1	chrX	136837188	136837388	+	1	NA	NA	NA	14542	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.358209	
mm_4145.1	chr1	170985274	170985474	+	1	NA	NA	NA	-9303	NM_010187	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.000000	0.547264	
mm_10802.1	chr2	24349612	24349812	+	1	NA	NA	NA	4341	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.005000	0.472637	
mm_13058.1	chr2	91114229	91114429	+	1	NA	NA	NA	-3815	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.015000	0.597015	
mm_69040.1	chr7	126799946	126800146	-	1	NA	NA	NA	401	NM_001177308	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.045000	0.641791	-32(GCCTTAAAACCC,+,0.00)
mm_115528.1	chr13	5864288	5864488	-	1	NA	NA	NA	2899	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.005000	0.442786	
mm_115133.1	chr13	104398287	104398487	+	1	NA	NA	NA	110552	NM_001081020	108154	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.000000	0.318408	
mm_26531.1	chr3	146117434	146117634	+	1	NA	NA	NA	-4257	NM_134160	171166	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	0.045000	0.661692	
mm_102451.1	chr11	59787560	59787760	-	1	NA	NA	NA	-3	NM_001290283	194908	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	0.100000	0.711443	
mm_62800.1	chr7	112853056	112853256	+	1	NA	NA	NA	93772	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.005000	0.368159	
mm_148543.1	chr19	4711106	4711306	+	1	NA	NA	NA	-17	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	0.010000	0.492537	
mm_9277.1	chr1	171634198	171634398	-	1	NA	NA	NA	7602	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.507463	
mm_15774.1	chr2	164332720	164332920	+	1	NA	NA	NA	55	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.015000	0.497512	
mm_78405.1	chr9	29013956	29014156	+	1	NA	NA	NA	949073	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.040000	0.557214	
mm_118001.1	chr13	100552527	100552727	-	1	NA	NA	NA	-129	NM_008756	18260	Mm.4807	NM_008756	ENSMUSG00000021638	Ocln	AI503564|Ocl	occludin	protein-coding	0.090000	0.696517	
mm_168829.1	chr12	22745528	22745728	-	1	NA	NA	NA	264615	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA	0.105000	0.726368	
mm_32927.1	chr4	119195321	119195521	+	1	NA	NA	NA	-104	NM_001038998	69216	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	0.125000	0.771144	
mm_36393.1	chr4	77700987	77701187	-	1	NA	NA	NA	510808	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.353234	
mm_70923.1	chr8	25808557	25808757	+	1	NA	NA	NA	183	NM_011485	20845	Mm.293314	NM_011485	ENSMUSG00000031574	Star	AV363654|D8Ertd419e|stARD1	steroidogenic acute regulatory protein	protein-coding	0.020000	0.512438	
mm_67542.1	chr7	81489709	81489909	-	1	NA	NA	NA	4116	NM_021492	11775	Mm.322894	NM_021492	ENSMUSG00000062444	Ap3b2	AI549966|AU042881|Naptb|[b]-NAP|beta-NAP|beta3B	adaptor-related protein complex 3, beta 2 subunit	protein-coding	0.040000	0.631841	
mm_20902.1	chr2	149798716	149798916	-	1	NA	NA	NA	-31967	NM_001085521	433485	Mm.330649	NM_001085521	ENSMUSG00000074736	Syndig1	AW123113|DSPC2|Gm14134|H2C20orf39|OTTMUSG00000015750|Tmem90b	synapse differentiation inducing 1	protein-coding	0.010000	0.482587	
mm_118287.1	chr13	112927273	112927473	-	1	NA	NA	NA	7	NM_028151	72198	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	0.080000	0.572139	
mm_32201.1	chr4	101496472	101496672	+	1	NA	NA	NA	-76	NM_198412	72685	Mm.76494	NM_198412	ENSMUSG00000028528	Dnajc6	2810027M23Rik|mKIAA0473	DnaJ heat shock protein family (Hsp40) member C6	protein-coding	0.150000	0.771144	
mm_146658.1	chr18	11857940	11858140	-	1	NA	NA	NA	-17602	NR_035447	100316686		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0.020000	0.537313	
mm_8223.1	chr1	138172059	138172259	-	1	NA	NA	NA	2967	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.005000	0.437811	
mm_29904.1	chr3	131470883	131471083	-	1	NA	NA	NA	-93785	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.010000	0.562189	84(TACTTTATAAAG,-,0.00),86(CTTTATAAAGGG,+,0.00),86(CTTTATAAAGGG,-,0.00)
mm_136637.1	chr17	5720768	5720968	+	1	NA	NA	NA	-77789	NR_045081	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.010000	0.532338	
mm_56489.1	chr6	99176263	99176463	-	1	NA	NA	NA	90152	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.010000	0.472637	
mm_37410.1	chr4	122859194	122859394	-	1	NA	NA	NA	23067	NM_008917	19063	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.025000	0.492537	
mm_46720.1	chr5	110653285	110653485	-	1	NA	NA	NA	-3	NM_153570	100608	Mm.29960	NM_153570	ENSMUSG00000033294	Noc4l	AI326906	NOC4 like	protein-coding	0.145000	0.716418	
mm_91325.1	chr10	25200134	25200334	-	1	NA	NA	NA	-64	NM_001347460	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.050000	0.592040	-92(CTTCTTAAAGAC,+,0.00)
mm_106788.1	chr12	4769250	4769450	+	1	NA	NA	NA	55	NM_028376	382562	Mm.251575	NM_028376	ENSMUSG00000020639	Pfn4	2900024P18Rik	profilin family, member 4	protein-coding	0.075000	0.587065	
mm_64434.1	chr7	142577965	142578165	+	1	NA	NA	NA	81	NR_130974	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.035000	0.641791	
mm_134304.1	chr16	15637231	15637431	-	1	NA	NA	NA	69	NM_008565	17217	Mm.1500	NM_008565	ENSMUSG00000022673	Mcm4	19G|AI325074|AU045576|Cdc21|Mcmd4|mKIAA4003|mcdc21	minichromosome maintenance complex component 4	protein-coding	0.120000	0.646766	
mm_106942.1	chr12	8739591	8739791	+	1	NA	NA	NA	-31705	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.000000	0.318408	
mm_171551.1	chr4	147131895	147132095	+	1	NA	NA	NA	-43871	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.035000	0.487562	
mm_58397.1	chr7	3213781	3213981	+	1	NA	NA	NA	-4745	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.015000	0.427861	-100(TACCATAAAAGC,-,0.00)
mm_3358.1	chr1	138172622	138172822	+	1	NA	NA	NA	2404	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.427861	-72(GTTTTAATGGTG,+,0.00)
mm_93713.1	chr10	118869072	118869272	-	1	NA	NA	NA	-269	NM_001014390	69181	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.150000	0.820896	
mm_3934.1	chr1	163762067	163762267	+	1	NA	NA	NA	-17416	NM_001305643	16579	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	0.010000	0.383085	
mm_18138.1	chr2	45036395	45036595	-	1	NA	NA	NA	-13318	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.005000	0.278607	
mm_162290.1	chr1	27716203	27716403	+	1	NA	NA	NA	-1028843	NM_001033764	210940	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	0.000000	0.383085	
mm_66021.1	chr7	30603708	30603908	-	1	NA	NA	NA	8926	NM_026815	109637	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	0.040000	0.567164	
mm_159280.1	chr2	165875687	165875887	-	1	NA	NA	NA	2650	NM_001291158	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.020000	0.487562	
mm_99646.1	chr11	105452874	105453074	+	1	NA	NA	NA	3761	NM_172568	632687	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|OTTMUSG00000002847|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.025000	0.502488	
mm_1618.1	chr1	74391602	74391802	+	1	NA	NA	NA	93	NM_153088	227292	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.085000	0.666667	-72(GCCCTTTTAAGG,-,0.00),-71(CCCTTTTAAGGG,-,0.00),-70(CCTTTTAAGGGG,+,0.00)
mm_39464.1	chr5	19226671	19226871	+	1	NA	NA	NA	-216	NR_102342	70832	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0.120000	0.681592	
mm_121873.1	chr14	21038345	21038545	-	1	NA	NA	NA	13997	NM_018829	55946	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.005000	0.293532	-65(TTCTTTTAATGG,-,0.00),-63(CTTTTAATGGGC,+,0.00)
mm_90035.1	chr10	115569922	115570122	+	1	NA	NA	NA	36	NM_029982	77798	Mm.446685	NM_029982	ENSMUSG00000092210	A930009A15Rik	-	RIKEN cDNA A930009A15 gene	protein-coding	0.030000	0.542289	
mm_141658.1	chr17	33718604	33718804	-	1	NA	NA	NA	-27	NR_045522	224703	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	0.110000	0.696517	
mm_143779.1	chr17	81725493	81725693	-	1	NA	NA	NA	12794	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.402985	
mm_163776.1	chr13	120019089	120019289	+	1	NA	NA	NA	33015	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.015000	0.462687	76(CTCTCTTTAGGG,-,0.00)
mm_80726.1	chr9	92542164	92542364	+	1	NA	NA	NA	41	NM_001142916	26432	Mm.79983	NM_011961	ENSMUSG00000032374	Plod2	D530025C14Rik|LH2|Plod-2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	protein-coding	0.135000	0.741294	
mm_112865.1	chr13	20847741	20847941	+	1	NA	NA	NA	53728	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.308458	-85(GCTTAAAAAGAA,+,0.00),-66(GCCTTTAAATGT,-,0.00)
mm_162526.1	chr1	163312921	163313121	-	1	NA	NA	NA	629	NM_011127	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.025000	0.407960	-97(TTTTTTAAAGCC,+,0.00),31(CGCTTTTTAAGA,-,0.00)
mm_25802.1	chr3	127789135	127789335	+	1	NA	NA	NA	-678	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.020000	0.467662	
mm_165760.1	chr3	116927171	116927371	-	1	NA	NA	NA	-40996	NR_040596	74654	Mm.410820	NR_040596	ENSMUSG00000080907	4930455H04Rik	-	RIKEN cDNA 4930455H04 gene	ncRNA	0.025000	0.378109	
mm_36161.1	chr4	59960564	59960764	-	1	NA	NA	NA	1	NM_008648	17843	Mm.457982	NM_008648	ENSMUSG00000041333	Mup4	Mup-4|Mup1	major urinary protein 4	protein-coding	0.010000	0.477612	-35(GCATATATAAAG,-,0.00)
mm_141534.1	chr17	31849964	31850164	-	1	NA	NA	NA	5728	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.060000	0.606965	
mm_22680.1	chr3	16183144	16183344	+	1	NA	NA	NA	61	NM_001145919	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.120000	0.716418	
mm_113532.1	chr13	37837547	37837747	+	1	NA	NA	NA	10254	NM_001039188	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.010000	0.482587	
mm_107855.1	chr12	69538091	69538291	+	1	NA	NA	NA	44837	NM_001033236	207965	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0.035000	0.487562	
mm_460.1	chr1	36307654	36307854	+	1	NA	NA	NA	21	NM_001172205	214855	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.120000	0.701493	
mm_29785.1	chr3	127499016	127499216	-	1	NA	NA	NA	-1	NM_001327938	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.100000	0.686567	
mm_35535.1	chr4	41314700	41314900	-	1	NA	NA	NA	101	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.080000	0.606965	
mm_68365.1	chr7	106813986	106814186	-	1	NA	NA	NA	-58	NM_028910	66786	Mm.159186	NM_028910	ENSMUSG00000036744	Olfr701	4932441H21Rik|4933433E02Rik|MOR283-1	olfactory receptor 701	protein-coding	0.005000	0.472637	
mm_97781.1	chr11	82387463	82387663	+	1	NA	NA	NA	-1337	NM_001304439	270893	Mm.341593	NM_023438	ENSMUSG00000020701	Tmem132e	Gm644	transmembrane protein 132E	protein-coding	0.075000	0.611940	
mm_93009.1	chr10	87058235	87058435	-	1	NA	NA	NA	289	NM_029685	76640	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding	0.065000	0.686567	
mm_159448.1	chr3	137552522	137552722	-	1	NA	NA	NA	0	NM_177665	229862	Mm.246591	NM_177665	ENSMUSG00000055138	Gm4861	9230109N16|EG229862	predicted gene 4861	protein-coding	0.030000	0.482587	
mm_29824.1	chr3	129677903	129678103	-	1	NA	NA	NA	47083	NM_001310737	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.010000	0.417910	-68(TCATATATAAGC,-,0.00)
mm_85769.1	chr9	108991473	108991673	-	1	NA	NA	NA	-329	NM_173019	270198	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0.030000	0.577114	
mm_42198.1	chr5	112292143	112292343	+	1	NA	NA	NA	15552	NM_009419	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.025000	0.562189	
mm_80856.1	chr9	98425218	98425418	+	1	NA	NA	NA	2357	NM_011254	19659	Mm.279741	NM_011254	ENSMUSG00000046402	Rbp1	CRBPI|Crbp|Rbp-1	retinol binding protein 1, cellular	protein-coding	0.025000	0.497512	-82(TGTTTTTAAAGG,-,0.00),-81(GTTTTTAAAGGT,+,0.00)
mm_142235.1	chr17	37481056	37481256	-	1	NA	NA	NA	2373	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.005000	0.393035	
mm_132457.1	chr16	36103607	36103807	+	1	NA	NA	NA	22432	NM_001159422	381045	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	0.010000	0.462687	
mm_18663.1	chr2	70753221	70753421	-	1	NA	NA	NA	72159	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.000000	0.333333	
mm_160402.1	chr8	70863386	70863586	-	1	NA	NA	NA	-6478	NM_032397	84036	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	0.050000	0.641791	
mm_138811.1	chr17	39846467	39846667	+	1	NA	NA	NA	3570	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.075000	0.616915	
mm_49577.1	chr6	30641717	30641917	+	1	NA	NA	NA	2599	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.020000	0.502488	
mm_6060.1	chr1	60504697	60504897	-	1	NA	NA	NA	61968	NM_001045513	77300	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0.000000	0.432836	
mm_139881.1	chr17	70755918	70756118	+	1	NA	NA	NA	90759	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.035000	0.616915	
mm_60349.1	chr7	44358501	44358701	+	1	NA	NA	NA	16429	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.020000	0.492537	
mm_163013.1	chr11	44658893	44659093	+	1	NA	NA	NA	40893	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.005000	0.442786	29(GCCCTTAAAAAA,-,0.00),59(GCCCTTAAAAAA,-,0.00),88(GCCCTTAAAAAA,-,0.00)
mm_134719.1	chr16	22896484	22896684	-	1	NA	NA	NA	-2198	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.005000	0.482587	
mm_37876.1	chr4	132397428	132397628	-	1	NA	NA	NA	24918	NM_001161797	100169	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0.020000	0.343284	-46(TTGTTTTAAAGG,-,0.00)
mm_111782.1	chr12	104473145	104473345	-	1	NA	NA	NA	-9	NM_010351	14836	Mm.129	NM_010351	ENSMUSG00000021095	Gsc	-	goosecoid homeobox	protein-coding	0.110000	0.686567	
mm_62140.1	chr7	97098379	97098579	+	1	NA	NA	NA	16728	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.000000	0.363184	
mm_146687.1	chr18	12862516	12862716	-	1	NA	NA	NA	97	NM_001252493	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.035000	0.621891	
mm_90245.1	chr10	121488888	121489088	+	1	NA	NA	NA	-12738	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.010000	0.472637	
mm_52535.1	chr6	115887119	115887319	+	1	NA	NA	NA	33691	NM_031177	81896	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	0.010000	0.572139	
mm_157556.1	chrX	52052425	52052625	-	1	NA	NA	NA	-79753	NM_028851	74279	Mm.159154	NM_028851	ENSMUSG00000031118	1700080O16Rik	-	RIKEN cDNA 1700080O16 gene	protein-coding	0.000000	0.393035	
mm_144181.1	chr18	6765190	6765390	+	1	NA	NA	NA	123	NM_001278447	19330	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.105000	0.696517	
mm_106687.1	chr12	3350172	3350372	+	1	NA	NA	NA	-14860	NM_008445	16570	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.010000	0.552239	
mm_43897.1	chr5	144190209	144190409	+	1	NA	NA	NA	23	NM_010800	17341	Mm.386767	NM_010800	ENSMUSG00000052271	Bhlha15	1810009C13Rik|Bhlhb8|MIST-1|Mist1	basic helix-loop-helix family, member a15	protein-coding	0.070000	0.646766	
mm_168367.1	chr11	17221359	17221559	+	1	NA	NA	NA	9566	NM_178909	103784	Mm.298132	NM_178909	ENSMUSG00000078970	Wdr92	AI553587|HZGJ	WD repeat domain 92	protein-coding	0.040000	0.517413	
mm_145491.1	chr18	60389753	60389953	+	1	NA	NA	NA	13824	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.378109	
mm_50132.1	chr6	41542473	41542673	+	1	NA	NA	NA	20797	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.447761	
mm_133655.1	chr16	91807273	91807473	+	1	NA	NA	NA	78002	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.015000	0.388060	
mm_73184.1	chr8	95320353	95320553	+	1	NA	NA	NA	8855	NM_199455	73407	Mm.472783	NM_028532	ENSMUSG00000090206	Tepp	1700055M20Rik	testis, prostate and placenta expressed	protein-coding	0.055000	0.621891	
mm_15568.1	chr2	158614284	158614484	+	1	NA	NA	NA	3626	NM_009508	22348	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	0.070000	0.557214	
mm_124327.1	chr14	103843379	103843579	-	1	NA	NA	NA	222	NM_007904	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.040000	0.592040	
mm_151936.1	chr19	5800636	5800836	-	1	NA	NA	NA	1936	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.010000	0.472637	
mm_137813.1	chr17	30007560	30007760	+	1	NA	NA	NA	2573	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.010000	0.422886	
mm_173139.1	chrX	21334704	21334904	-	1	NA	NA	NA	-77	NR_033482	629024	Mm.391230	NR_033482	ENSMUSG00000087586	Gm6938	EG629024	predicted gene 6938	ncRNA	0.025000	0.492537	
mm_129645.1	chr15	80565059	80565259	-	1	NA	NA	NA	-4689	NM_001163189	383075	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	0.035000	0.572139	
mm_101191.1	chr11	18326956	18327156	-	1	NA	NA	NA	231070	NR_131129	327872		NR_131129	ENSMUSG00000085453	Gm12018	OTTMUSG00000005202	predicted gene 12018	ncRNA	0.015000	0.452736	
mm_83081.1	chr9	40032404	40032604	-	1	NA	NA	NA	10109	NM_146286	258283	Mm.377413	NM_146286	ENSMUSG00000046678	Olfr981	MOR223-8	olfactory receptor 981	protein-coding	0.005000	0.378109	
mm_37057.1	chr4	116052089	116052289	-	1	NA	NA	NA	1687	NM_028142	72181	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	0.005000	0.532338	
mm_168620.1	chr11	78247971	78248171	+	1	NA	NA	NA	2325	NM_009143	20316	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	0.010000	0.567164	
mm_48991.1	chr6	4756291	4756491	+	1	NA	NA	NA	9085	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.542289	
mm_11467.1	chr2	32288235	32288435	+	1	NA	NA	NA	82	NM_001080968	99412	Mm.106376	NM_133852	ENSMUSG00000002546	Golga2	AW555139|GM130|mKIAA4150	golgi autoantigen, golgin subfamily a, 2	protein-coding	0.085000	0.656716	
mm_113499.1	chr13	37482287	37482487	+	1	NA	NA	NA	137042	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.005000	0.537313	
mm_116024.1	chr13	25020009	25020209	-	1	NA	NA	NA	208	NM_001013389	380836	Mm.387097	NM_001013389	ENSMUSG00000021339	Mrs2	Gm902|HPT|Mrs2l|RPT	MRS2 magnesium transporter	protein-coding	0.170000	0.800995	
mm_156813.1	chrX	164090143	164090343	+	1	NA	NA	NA	56	NM_020626	57394	Mm.143766	NM_020626	ENSMUSG00000015401	Tmem27	0610008J07Rik|NX-17|NX17	transmembrane protein 27	protein-coding	0.035000	0.462687	-97(CCTTTTAGATGG,+,0.00)
mm_50109.1	chr6	41533677	41533877	+	1	NA	NA	NA	12001	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.437811	
mm_49429.1	chr6	29272383	29272583	+	1	NA	NA	NA	-5	NM_001190461	69573	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.070000	0.606965	
mm_142110.1	chr17	35835917	35836117	-	1	NA	NA	NA	2284	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.015000	0.482587	
mm_47863.1	chr5	134614891	134615091	-	1	NA	NA	NA	34	NM_022964	56743	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0.015000	0.552239	
mm_146210.1	chr18	76929961	76930161	+	1	NA	NA	NA	34	NM_025409	66191	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	0.105000	0.686567	
mm_43772.1	chr5	141241462	141241662	+	1	NA	NA	NA	28	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	0.180000	0.805970	
mm_56634.1	chr6	113076222	113076422	-	1	NA	NA	NA	922	NR_027010	14910	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	0.080000	0.666667	
mm_49271.1	chr6	17519615	17519815	+	1	NA	NA	NA	55758	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.020000	0.537313	
mm_55589.1	chr6	71440534	71440734	-	1	NA	NA	NA	3	NM_024288	68477	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.160000	0.761194	
mm_50192.1	chr6	41851767	41851967	+	1	NA	NA	NA	4318	NM_008843	18716	Mm.214755	NM_008843	ENSMUSG00000058499	Pip	GCDFP-15|GP17|mSMGP	prolactin induced protein	protein-coding	0.020000	0.393035	
mm_121994.1	chr14	26522931	26523131	-	1	NA	NA	NA	11593	NM_032008	83997	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0.005000	0.467662	
mm_103650.1	chr11	78972928	78973128	-	1	NA	NA	NA	11896	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.015000	0.562189	
mm_114917.1	chr13	95176589	95176789	+	1	NA	NA	NA	46361	NM_001170669	218461	Mm.100167	NM_172263	ENSMUSG00000021684	Pde8b	B230331L10Rik|C030047E14Rik	phosphodiesterase 8B	protein-coding	0.020000	0.547264	
mm_124901.1	chr15	10714760	10714960	+	1	NA	NA	NA	19	NR_045064	75259	Mm.33928	NR_045063	ENSMUSG00000097058	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	0.120000	0.741294	
mm_99689.1	chr11	106065948	106066148	+	1	NA	NA	NA	-59	NM_027346	70207	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	0.085000	0.611940	7(CCATTTAGGGTC,+,0.00)
mm_98416.1	chr11	94564948	94565148	+	1	NA	NA	NA	-26	NM_007689	12643	Mm.440523	NM_007689	ENSMUSG00000039084	Chad	SLRR4A	chondroadherin	protein-coding	0.060000	0.606965	-32(CCCTATAAATGG,-,0.00)
mm_155840.1	chrX	101087290	101087490	+	1	NA	NA	NA	-1985	NM_007515	11989	Mm.5140	NM_007515	ENSMUSG00000031297	Slc7a3	Atrc3|CAT-3|CAT3|SLC7A1|SLC7A2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 3	protein-coding	0.025000	0.562189	
mm_114499.1	chr13	70028259	70028459	+	1	NA	NA	NA	-11	NR_045965	74280	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA	0.005000	0.487562	
mm_54642.1	chr6	38863500	38863700	-	1	NA	NA	NA	12590	NM_010433	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.005000	0.278607	-7(TTTTTTAAAGCT,+,0.00)
mm_124409.1	chr14	115477544	115477744	-	1	NA	NA	NA	-68092	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0.035000	0.532338	
mm_74627.1	chr8	13167802	13168002	-	1	NA	NA	NA	8741	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.025000	0.507463	
mm_25822.1	chr3	127930488	127930688	+	1	NA	NA	NA	14417	NR_040552	329753	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	0.010000	0.477612	
mm_119708.1	chr14	53806409	53806609	+	1	NA	NA	NA	447420	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.447761	-78(ATGTCTATAAGG,-,0.00),-29(GCCTTTATACCT,+,0.00)
mm_80360.1	chr9	75220943	75221143	+	1	NA	NA	NA	-10971	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.010000	0.452736	
mm_94913.1	chr11	29456442	29456642	+	1	NA	NA	NA	58491	NM_026465	67939	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0.005000	0.348259	
mm_161245.1	chr13	98749339	98749539	-	1	NA	NA	NA	-54608	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.005000	0.303483	
mm_49197.1	chr6	15196968	15197168	+	1	NA	NA	NA	11562	NM_001286607	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.005000	0.442786	
mm_66150.1	chr7	31137334	31137534	-	1	NA	NA	NA	-10411	NM_011322	20266	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	0.005000	0.457711	
mm_113312.1	chr13	30761525	30761725	+	1	NA	NA	NA	12392	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.015000	0.507463	-92(CCTTTTAGAGAA,+,0.00)
mm_97825.1	chr11	83039767	83039967	+	1	NA	NA	NA	175	NR_073523	237887	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	pseudo	0.025000	0.522388	-34(TACTTTTAAAGG,-,0.00),-33(ACTTTTAAAGGA,+,0.00)
mm_112555.1	chr13	12565803	12566003	+	1	NA	NA	NA	20	NM_026184	67475	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	0.080000	0.671642	
mm_55693.1	chr6	72840896	72841096	-	1	NA	NA	NA	-51951	NM_009332	21415	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.000000	0.298507	
mm_34544.1	chr4	149539551	149539751	+	1	NA	NA	NA	1788	NR_049189	100885828		NR_049189	ENSMUSG00000093403	Mir5616	Gm25191|mir-5616|mmu-mir-5616	microRNA 5616	ncRNA	0.020000	0.577114	
mm_108347.1	chr12	80463131	80463331	+	1	NA	NA	NA	136	NM_133798	97827	Mm.206631	NM_133798	ENSMUSG00000032705	Exd2	4930539P14Rik|C85658|Exdl2	exonuclease 3'-5' domain containing 2	protein-coding	0.070000	0.661692	-49(GCTTTTATGCAT,+,0.00)
mm_166387.1	chr5	133140692	133140892	+	1	NA	NA	NA	-598449	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.005000	0.432836	
mm_147600.1	chr18	56789186	56789386	-	1	NA	NA	NA	81473	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.010000	0.452736	10(GCTTTTCGAGAC,+,0.00)
mm_90816.1	chr10	7919708	7919908	-	1	NA	NA	NA	36315	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.020000	0.472637	
mm_126700.1	chr15	85131970	85132170	+	1	NA	NA	NA	-29	NM_026357	67747	Mm.158173	NM_026357	ENSMUSG00000022431	Ribc2	4930579A10Rik|Trib	RIB43A domain with coiled-coils 2	protein-coding	0.105000	0.587065	
mm_122340.1	chr14	37135136	37135336	-	1	NA	NA	NA	86	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.095000	0.616915	
mm_139473.1	chr17	55986379	55986579	+	1	NA	NA	NA	-32	NM_183178	240121	Mm.270660	NM_183178	ENSMUSG00000011589	Fsd1	-	fibronectin type 3 and SPRY domain-containing protein	protein-coding	0.080000	0.611940	
mm_130274.1	chr15	96698812	96699012	-	1	NA	NA	NA	786	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.165000	0.751244	
mm_40480.1	chr5	54053810	54054010	+	1	NA	NA	NA	55387	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.025000	0.517413	
mm_172075.1	chr6	140746813	140747013	+	1	NA	NA	NA	120028	NM_001309436	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.010000	0.393035	18(TTTTTAATAGTC,+,0.00)
mm_83521.1	chr9	46229917	46230117	-	1	NA	NA	NA	1387	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.040000	0.587065	
mm_50872.1	chr6	55452121	55452321	+	1	NA	NA	NA	243	NM_007407	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	0.140000	0.706468	
mm_96227.1	chr11	62512323	62512523	+	1	NA	NA	NA	26838	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.035000	0.482587	
mm_173212.1	chrX	73174960	73175160	-	1	NA	NA	NA	1929	NM_001243002	100504429	Mm.307966	NM_001243002	ENSMUSG00000079566	Spin2d	4930408F14Rik	spindlin family, member 2D	protein-coding	0.040000	0.537313	
mm_44346.1	chr5	17782838	17783038	-	1	NA	NA	NA	52958	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.383085	
mm_64075.1	chr7	140920804	140921004	+	1	NA	NA	NA	2	NM_133946	101613	Mm.386833	NM_133946	ENSMUSG00000038745	Nlrp6	AI504961|Avr|Nalp6|Navr|Navr/Avr|Non-AVR|Pypaf5	NLR family, pyrin domain containing 6	protein-coding	0.010000	0.462687	
mm_15427.1	chr2	157086948	157087148	+	1	NA	NA	NA	-7	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.015000	0.577114	
mm_53762.1	chr6	145746754	145746954	+	1	NA	NA	NA	-61529	NM_027760	71323	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.175000	0.845771	
mm_142479.1	chr17	45686720	45686920	-	1	NA	NA	NA	448	NM_026732	68463	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	0.025000	0.497512	
mm_114128.1	chr13	55211440	55211640	+	1	NA	NA	NA	1758	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.100000	0.756219	
mm_116725.1	chr13	51703056	51703256	-	1	NA	NA	NA	51448	NM_029279	75420	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.025000	0.592040	
mm_52672.1	chr6	117907079	117907279	+	1	NA	NA	NA	397	NM_133834	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.085000	0.691542	
mm_45551.1	chr5	73131335	73131535	-	1	NA	NA	NA	124531	NM_173403	231290	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	0.005000	0.293532	
mm_32611.1	chr4	112232266	112232466	+	1	NA	NA	NA	-55	NM_001102474	195564	Mm.259652	NM_177578	ENSMUSG00000070868	Skint3	A430090E18Rik|Skint-3	selection and upkeep of intraepithelial T cells 3	protein-coding	0.010000	0.388060	
mm_171707.1	chr4	75511484	75511684	-	1	NA	NA	NA	-233298	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.025000	0.477612	
mm_65332.1	chr7	24978295	24978495	-	1	NA	NA	NA	-5667	NM_010261	14470	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.015000	0.631841	
mm_77423.1	chr8	121083019	121083219	-	1	NA	NA	NA	-9	NR_130109	68790	Mm.246916	NR_045471	ENSMUSG00000097336	Fendrr	1110050K14Rik|LL66|linc-Foxf1a|lincFoxf1	Foxf1 adjacent non-coding developmental regulatory RNA	ncRNA	0.130000	0.731343	
mm_137700.1	chr17	29090610	29090810	+	1	NA	NA	NA	-269	NM_001111099	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.005000	0.487562	-40(CCTTTTCTGGGA,+,0.00)
mm_85268.1	chr9	99436402	99436602	-	1	NA	NA	NA	210	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.125000	0.746269	
mm_137634.1	chr17	28329364	28329564	+	1	NA	NA	NA	993	NM_011287	19896	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.035000	0.572139	
mm_121506.1	chr14	121939029	121939229	+	1	NA	NA	NA	-23355	NM_182806	110168	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	0.005000	0.522388	
mm_99664.1	chr11	105922852	105923052	+	1	NA	NA	NA	21195	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.025000	0.507463	
mm_56696.1	chr6	114659095	114659295	-	1	NA	NA	NA	16098	NM_001253717	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.005000	0.457711	-35(GCCTATATAGTG,+,0.00)
mm_103161.1	chr11	70455103	70455303	-	1	NA	NA	NA	3272	NM_025397	66172	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0.005000	0.417910	
mm_103086.1	chr11	69917617	69917817	-	1	NA	NA	NA	2913	NM_001166590	276770	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.010000	0.497512	
mm_80769.1	chr9	95559838	95560038	+	1	NA	NA	NA	121	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.200000	0.810945	
mm_16919.1	chr2	13574461	13574661	-	1	NA	NA	NA	250	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.100000	0.681592	
mm_90083.1	chr10	116808705	116808905	+	1	NA	NA	NA	79552	NR_131036	75878	Mm.370607	NR_131036		4930579P08Rik	-	RIKEN cDNA 4930579P08 gene	ncRNA	0.015000	0.462687	
mm_111973.1	chr12	110019860	110020060	-	1	NA	NA	NA	138113	NR_045466	67280	Mm.390495	NR_045466		3110009F21Rik	-	RIKEN cDNA 3110009F21 gene	ncRNA	0.015000	0.383085	
mm_115486.1	chr13	3610890	3611090	-	1	NA	NA	NA	118	NM_134063	105203	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	0.130000	0.701493	
mm_158742.1	chrX	164250279	164250479	-	1	NA	NA	NA	7814	NM_009759	12169	Mm.504	NM_009759	ENSMUSG00000031377	Bmx	Etk|Etk/Bmx|Tyro8	BMX non-receptor tyrosine kinase	protein-coding	0.000000	0.427861	-33(CTCTTTTAATGC,-,0.00)
mm_75023.1	chr8	31168658	31168858	-	1	NA	NA	NA	-34	NM_026453	67920	Mm.289818	NM_026453	ENSMUSG00000031578	Mak16	2600016B03Rik|AI314911|Rbm13	MAK16 homolog	protein-coding	0.120000	0.651741	
mm_132571.1	chr16	38143204	38143404	+	1	NA	NA	NA	-54044	NR_033221	414072	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.020000	0.497512	
mm_107320.1	chr12	31390717	31390917	+	1	NA	NA	NA	-39346	NM_007861	13382	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	0.000000	0.477612	
mm_22227.1	chr2	174428637	174428837	-	1	NA	NA	NA	10302	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.015000	0.522388	
mm_140412.1	chr17	87648244	87648444	+	1	NA	NA	NA	12365	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.000000	0.258706	
mm_160294.1	chr7	130728555	130728755	+	1	NA	NA	NA	36099	NM_021314	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.065000	0.582090	
mm_150377.1	chr19	36083616	36083816	+	1	NA	NA	NA	0	NM_019428	54364	Mm.277891	NM_019428	ENSMUSG00000024800	Rpp30	Rnasep2|TSG15	ribonuclease P/MRP 30 subunit	protein-coding	0.065000	0.567164	
mm_89113.1	chr10	84652501	84652701	+	1	NA	NA	NA	30164	NM_027423	70428	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	0.000000	0.308458	63(TTTTTTATAGGC,+,0.00)
mm_124625.1	chr15	3291026	3291226	+	1	NA	NA	NA	12400	NM_001166063	100039139	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	ENSMUSG00000071814	coiled-coil domain containing 152	protein-coding	0.005000	0.422886	6(GCTTATATGCAC,+,0.00)
mm_112791.1	chr13	20185322	20185522	+	1	NA	NA	NA	94915	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.050000	0.517413	
mm_80633.1	chr9	89211143	89211343	+	1	NA	NA	NA	53	NM_026829	107885	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.095000	0.671642	
mm_137447.1	chr17	26532798	26532998	+	1	NA	NA	NA	-24426	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.015000	0.517413	
mm_99500.1	chr11	102925180	102925380	+	1	NA	NA	NA	-156	NM_197959	70218	Mm.32084	NM_197959	ENSMUSG00000051378	Kif18b	3000004C01Rik	kinesin family member 18B	protein-coding	0.065000	0.567164	
mm_154500.1	chrM	11653	11853	-	1	NA	NA	NA	NA	NA									0.000000	0.313433	71(TCCTATAAAAGT,-,0.00)
mm_163888.1	chr14	25869545	25869745	+	1	NA	NA	NA	27490	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.020000	0.547264	
mm_86162.1	chr9	118466963	118467163	-	1	NA	NA	NA	-11126	NM_001164789	13813	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	0.010000	0.338308	
mm_43522.1	chr5	137151893	137152093	+	1	NA	NA	NA	-35786	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.015000	0.517413	
mm_170112.1	chr17	39845335	39845535	+	1	NA	NA	NA	2438	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.120000	0.691542	
mm_158963.1	chr1	92619687	92619887	+	1	NA	NA	NA	-94	NM_206896	257890	Mm.337259	NM_206896	ENSMUSG00000061616	Olfr12	MOR208-5	olfactory receptor 12	protein-coding	0.000000	0.502488	
mm_67154.1	chr7	73539167	73539367	-	1	NA	NA	NA	2479	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.000000	0.358209	
mm_20514.1	chr2	130642733	130642933	-	1	NA	NA	NA	11	NM_197945	241638	Mm.440130	NM_197945	ENSMUSG00000037703	Lzts3	Prosapip1	leucine zipper, putative tumor suppressor family member 3	protein-coding	0.145000	0.800995	
mm_155845.1	chrX	101260076	101260276	+	1	NA	NA	NA	3816	NM_001033362	245536	Mm.212463	NM_001033362	ENSMUSG00000090141	Gm614	-	predicted gene 614	protein-coding	0.005000	0.378109	-95(CTTTTTATAAAC,+,0.00),-85(ACTTTTAAAGAA,+,0.00)
mm_49793.1	chr6	35252605	35252805	+	1	NA	NA	NA	6	NR_015608	67705	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	0.100000	0.716418	
mm_55200.1	chr6	52204298	52204498	-	1	NA	NA	NA	189	NM_010453	15402	Mm.173	NM_010453	ENSMUSG00000038253	Hoxa5	Hox-1.3	homeobox A5	protein-coding	0.050000	0.442786	
mm_112485.1	chr13	5871505	5871705	+	1	NA	NA	NA	10116	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.030000	0.452736	
mm_109146.1	chr12	107157254	107157454	+	1	NA	NA	NA	-441030	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.010000	0.482587	
mm_109629.1	chr12	112767429	112767629	+	1	NA	NA	NA	6874	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.045000	0.587065	
mm_1423.1	chr1	67174269	67174469	+	1	NA	NA	NA	51342	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.015000	0.487562	
mm_142546.1	chr17	46556112	46556312	-	1	NA	NA	NA	-50	NM_020493	20807	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0.090000	0.676617	-34(CGCCATATAAGG,-,0.00),-32(CCATATAAGGAG,+,0.00),-14(CGCCATAAAAGG,-,0.00),9(CTCTTTATATGG,-,0.00),11(CTTTATATGGGG,+,0.00)
mm_85627.1	chr9	107616099	107616299	-	1	NA	NA	NA	-6958	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.005000	0.492537	
mm_80319.1	chr9	74866404	74866604	+	1	NA	NA	NA	4583	NM_008262	15379	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	0.025000	0.572139	
mm_48645.1	chr5	145805769	145805969	-	1	NA	NA	NA	5	NM_177380	337924	Mm.425301	NM_177380	ENSMUSG00000054417	Cyp3a44	-	cytochrome P450, family 3, subfamily a, polypeptide 44	protein-coding	0.000000	0.472637	
mm_127175.1	chr15	98934558	98934758	+	1	NA	NA	NA	-268	NM_011654	22143	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.125000	0.731343	
mm_60257.1	chr7	43797455	43797655	+	1	NA	NA	NA	-22	NM_001324398	259277	Mm.458023	NM_008940	ENSMUSG00000064023	Klk8	BSP1|NP|Nrpn|Prss19	kallikrein related-peptidase 8	protein-coding	0.090000	0.661692	-8(CTCGTTAAAAGG,-,0.00)
mm_142429.1	chr17	45569533	45569733	-	1	NA	NA	NA	3628	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.045000	0.527363	
mm_8623.1	chr1	156270594	156270794	-	1	NA	NA	NA	32654	NM_001134741	214575	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	0.025000	0.492537	
mm_121584.1	chr14	4948015	4948215	-	1	NA	NA	NA	76959	NM_001242945	100041306	Mm.396155	NM_001242945	ENSMUSG00000094132	Gm3264	-	predicted gene 3264	protein-coding	0.015000	0.462687	-32(CCCTATAAAAAC,-,0.00)
mm_99031.1	chr11	98944121	98944321	+	1	NA	NA	NA	4510	NM_001177303	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.010000	0.547264	-53(GCTTATAAATAG,+,0.00)
mm_139458.1	chr17	55952694	55952894	+	1	NA	NA	NA	171	NM_015766	50498	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	0.010000	0.572139	
mm_29312.1	chr3	107986298	107986498	-	1	NA	NA	NA	38	NM_008183	14863	Mm.440086	NM_008183	ENSMUSG00000040562	Gstm2	Gstb-2|Gstb2	glutathione S-transferase, mu 2	protein-coding	0.020000	0.557214	
mm_66002.1	chr7	30562656	30562856	-	1	NA	NA	NA	428	NM_025498	66340	Mm.86557	NM_025498	ENSMUSG00000036835	Psenen	1700023M09Rik|Pen-2	presenilin enhancer gamma secretase subunit	protein-coding	0.045000	0.547264	
mm_37934.1	chr4	132922455	132922655	-	1	NA	NA	NA	-4	NM_001163792	230789	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0.165000	0.786070	
mm_12878.1	chr2	84678323	84678523	+	1	NA	NA	NA	21	NM_025885	381379	Mm.219643	NM_025885	ENSMUSG00000027080	Med19	2410018M14Rik|3110040A13Rik|LCMR1	mediator complex subunit 19	protein-coding	0.045000	0.552239	
mm_104290.1	chr11	90388122	90388322	-	1	NA	NA	NA	2695	NM_172563	217082	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0.015000	0.452736	
mm_75282.1	chr8	41016658	41016858	-	1	NA	NA	NA	-710	NR_015457	78849	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	0.035000	0.562189	
mm_17453.1	chr2	28556017	28556217	-	1	NA	NA	NA	7286	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.005000	0.562189	
mm_120770.1	chr14	73552664	73552864	+	1	NA	NA	NA	-22	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	0.125000	0.716418	
mm_63537.1	chr7	127988994	127989194	+	1	NA	NA	NA	4773	NM_023258	66824	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	0.005000	0.407960	
mm_105551.1	chr11	106387986	106388186	-	1	NA	NA	NA	-5305	NM_010494	15896	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.020000	0.502488	
mm_70897.1	chr8	25601468	25601668	+	1	NA	NA	NA	-33	NM_001308481	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.100000	0.696517	
mm_110700.1	chr12	69228076	69228276	-	1	NA	NA	NA	14	NM_011133	18974	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	0.080000	0.601990	
mm_132596.1	chr16	38458799	38458999	+	1	NA	NA	NA	-34	NM_009855	12519	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0.010000	0.487562	
mm_50545.1	chr6	49046165	49046365	+	1	NA	NA	NA	9747	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.005000	0.422886	
mm_117314.1	chr13	67609549	67609749	-	1	NA	NA	NA	58	NM_001163246	100416706	Mm.478045	NM_001163246	ENSMUSG00000058093	Zfp729b	AA987127	zinc finger protein 729b	protein-coding	0.030000	0.537313	
mm_95306.1	chr11	46222514	46222714	+	1	NA	NA	NA	-9521	NR_105955	102465598		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0.050000	0.577114	
mm_159575.1	chr4	116877388	116877588	+	1	NA	NA	NA	86	NM_001029912	74464	Mm.218946	NM_001029912	ENSMUSG00000033948	Zswim5	4933426E21Rik|AI503093|mKIAA1511	zinc finger SWIM-type containing 5	protein-coding	0.095000	0.711443	
mm_11330.1	chr2	30441891	30442091	+	1	NA	NA	NA	25941	NM_138748	110854	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.030000	0.542289	
mm_102545.1	chr11	61296472	61296672	-	1	NA	NA	NA	-29044	NR_138545	11671	Mm.398221	NM_007437	ENSMUSG00000010025	Aldh3a2	AI194803|Ahd-3|Ahd-3r|Ahd3|Ahd3-r|Aldh4|Aldh4-r|FALDH	aldehyde dehydrogenase family 3, subfamily A2	protein-coding	0.000000	0.467662	-33(CCCTATATACAG,+,0.00)
mm_100493.1	chr11	120467587	120467787	+	1	NA	NA	NA	52	NM_001159328	15239	Mm.7919	NM_008244	ENSMUSG00000025793	Hgs	Hgr|Hrs|ZFYVE8|tn	HGF-regulated tyrosine kinase substrate	protein-coding	0.140000	0.691542	
mm_155236.1	chrX	57211964	57212164	+	1	NA	NA	NA	-79	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.030000	0.447761	
mm_8051.1	chr1	135373376	135373576	-	1	NA	NA	NA	1587	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.000000	0.487562	-61(CAATATAAAAGC,-,0.00)
mm_46748.1	chr5	111594145	111594345	-	1	NA	NA	NA	12684	NR_015546	330164	Mm.193276	NM_177875	ENSMUSG00000052848	C130026L21Rik	-	RIKEN cDNA C130026L21 gene	ncRNA	0.015000	0.487562	-33(TCCCATAAAAAC,-,0.00),-31(CCATAAAAACCC,+,0.00)
mm_114440.1	chr13	66007778	66007978	+	1	NA	NA	NA	-105575	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.045000	0.547264	-32(GCCTTTAAATGC,+,0.00),-32(GCCTTTAAATGC,-,0.00)
mm_112950.1	chr13	21041117	21041317	+	1	NA	NA	NA	32082	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.005000	0.363184	
mm_74420.1	chr8	3625445	3625645	-	1	NA	NA	NA	0	NM_001129803	18545	Mm.440882	NM_008790	ENSMUSG00000004630	Pcp2	L7|Pcp-2	Purkinje cell protein 2 (L7)	protein-coding	0.000000	0.517413	-34(GCCTTTTAAAAG,-,0.00),-33(CCTTTTAAAAGG,+,0.00),-33(CCTTTTAAAAGG,-,0.00),-32(CTTTTAAAAGGC,+,0.00)
mm_60964.1	chr7	47727257	47727457	+	1	NA	NA	NA	-125985	NM_153067	233222	Mm.240142	NM_153067	ENSMUSG00000078698	Mrgpra3	Mrga3	MAS-related GPR, member A3	protein-coding	0.005000	0.402985	
mm_55303.1	chr6	54934367	54934567	-	1	NA	NA	NA	37194	NM_001171007	107607	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.025000	0.542289	
mm_118619.1	chr14	21076042	21076242	+	1	NA	NA	NA	-10	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.115000	0.726368	
mm_108081.1	chr12	73960985	73961185	+	1	NA	NA	NA	-3445	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.025000	0.442786	
mm_28002.1	chr3	83008584	83008784	-	1	NA	NA	NA	960	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.025000	0.457711	
mm_129473.1	chr15	78710684	78710884	-	1	NA	NA	NA	7329	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0.015000	0.611940	
mm_68841.1	chr7	126355862	126356062	-	1	NA	NA	NA	12083	NR_106025	102466797		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.005000	0.562189	
mm_75522.1	chr8	56474321	56474521	-	1	NA	NA	NA	10547	NR_131020	75123	Mm.72666	NR_131020	ENSMUSG00000110310	4930518J21Rik	-	RIKEN cDNA 4930518J21 gene	ncRNA	0.005000	0.467662	-35(TGCTATTAAAGG,-,0.00)
mm_65996.1	chr7	30554704	30554904	-	1	NA	NA	NA	1502	NM_001012401	243912	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	0.030000	0.592040	
mm_79158.1	chr9	47809987	47810187	+	1	NA	NA	NA	8121	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.035000	0.512438	
mm_95323.1	chr11	46479889	46480089	+	1	NA	NA	NA	25058	NM_134250	171285	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0.010000	0.447761	
mm_86289.1	chr9	121915080	121915280	-	1	NA	NA	NA	1125	NM_010012	13124	Mm.20889	NM_010012	ENSMUSG00000050445	Cyp8b1	-	cytochrome P450, family 8, subfamily b, polypeptide 1	protein-coding	0.035000	0.572139	
mm_43649.1	chr5	138280398	138280598	+	1	NA	NA	NA	-11	NM_016964	50878	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	0.125000	0.626866	
mm_122634.1	chr14	51145816	51146016	-	1	NA	NA	NA	851	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.005000	0.527363	
mm_131180.1	chr16	7149681	7149881	+	1	NA	NA	NA	79946	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.010000	0.457711	
mm_128031.1	chr15	25363604	25363804	-	1	NA	NA	NA	50060	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.015000	0.378109	
mm_171692.1	chr4	65990086	65990286	-	1	NA	NA	NA	385200	NM_001161782	69807	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0.040000	0.611940	
mm_134833.1	chr16	26106098	26106298	-	1	NA	NA	NA	-414	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.005000	0.502488	
mm_112571.1	chr13	13590227	13590427	+	1	NA	NA	NA	-82	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.100000	0.701493	
mm_59657.1	chr7	28180146	28180346	+	1	NA	NA	NA	-70	NM_001271370	13549	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0.105000	0.766169	
mm_127441.1	chr15	101270311	101270511	+	1	NA	NA	NA	3565	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.055000	0.621891	
mm_124008.1	chr14	76104663	76104863	-	1	NA	NA	NA	6052	NM_026177	67467	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0.005000	0.328358	
mm_81867.1	chr9	119034919	119035119	+	1	NA	NA	NA	3223	NR_029742	387218		NR_029742	ENSMUSG00000065513	Mir26a-1	Mirn26a|Mirn26a-1|miR-26a|mir-26a-1	microRNA 26a-1	ncRNA	0.035000	0.487562	
mm_113062.1	chr13	23739782	23739982	+	1	NA	NA	NA	1075	NM_015786	50708	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	0.040000	0.552239	
mm_88659.1	chr10	79996447	79996647	+	1	NA	NA	NA	-1061	NM_001347081	27403	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.075000	0.666667	-33(CCACTTAAAGGG,+,0.00)
mm_152042.1	chr19	6128149	6128349	-	1	NA	NA	NA	-34	NM_026912	69024	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	0.075000	0.636816	
mm_85312.1	chr9	101187683	101187883	-	1	NA	NA	NA	11290	NM_172144	235542	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0.010000	0.373134	
mm_127043.1	chr15	96641607	96641807	+	1	NA	NA	NA	255	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.060000	0.621891	
mm_123907.1	chr14	73322344	73322544	-	1	NA	NA	NA	3347	NM_009029	19645	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb	retinoblastoma 1	protein-coding	0.015000	0.452736	
mm_47051.1	chr5	116083193	116083393	-	1	NA	NA	NA	-47	NM_001101546	545798	Mm.483995	NM_001101546	ENSMUSG00000079278	Tmem233	DSPB2|Gm13843|OTTMUSG00000014722	transmembrane protein 233	protein-coding	0.035000	0.621891	
mm_79010.1	chr9	45500250	45500450	+	1	NA	NA	NA	-69118	NR_040732	74602	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.000000	0.532338	
mm_88693.1	chr10	80141464	80141664	+	1	NA	NA	NA	-711	NM_001347092	66043	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0.075000	0.601990	
mm_55054.1	chr6	49046272	49046472	-	1	NA	NA	NA	9854	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.000000	0.427861	
mm_171498.1	chr4	146224659	146224859	-	1	NA	NA	NA	-45626	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.060000	0.532338	
mm_136242.1	chr16	90934671	90934871	-	1	NA	NA	NA	78	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.100000	0.676617	
mm_96359.1	chr11	67064661	67064861	+	1	NA	NA	NA	12091	NM_001040026	52892	Mm.129731	NM_001040026	ENSMUSG00000069844	Sco1	2610001C07Rik|D11Bwg1310e	SCO1 cytochrome c oxidase assembly protein	protein-coding	0.015000	0.398010	
mm_13739.1	chr2	118114600	118114800	+	1	NA	NA	NA	2824	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.035000	0.482587	
mm_85702.1	chr9	108110683	108110883	-	1	NA	NA	NA	-16303	NM_146226	235606	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0.055000	0.597015	
mm_8856.1	chr1	162714280	162714480	-	1	NA	NA	NA	26176	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.005000	0.432836	
mm_72655.1	chr8	84842662	84842862	+	1	NA	NA	NA	-2097	NM_009010	19358	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.010000	0.487562	
mm_152372.1	chr19	10203814	10204014	-	1	NA	NA	NA	29	NM_007999	14156	Mm.2952	NM_007999	ENSMUSG00000024742	Fen1	AW538437|FEN-1	flap structure specific endonuclease 1	protein-coding	0.070000	0.582090	
mm_26535.1	chr3	146121569	146121769	+	1	NA	NA	NA	-122	NM_134160	171166	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	0.050000	0.611940	
mm_92980.1	chr10	86693394	86693594	-	1	NA	NA	NA	7967	NR_015572	66263	Mm.392261	NR_015572		1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	0.020000	0.497512	
mm_171566.1	chr4	147305524	147305724	+	1	NA	NA	NA	129758	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.020000	0.507463	
mm_129744.1	chr15	82244300	82244500	-	1	NA	NA	NA	-64	NM_001080158	66570	Mm.23596	NM_025639	ENSMUSG00000068101	Cenpm	2610019I03Rik|AI853711|Pane1	centromere protein M	protein-coding	0.100000	0.656716	
mm_149299.1	chr19	10699271	10699471	+	1	NA	NA	NA	10556	NM_181403	107305	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.010000	0.532338	
mm_168119.1	chr10	18023007	18023207	-	1	NA	NA	NA	145	NM_028440	73112	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	0.050000	0.616915	
mm_161466.1	chr15	78305525	78305725	-	1	NA	NA	NA	96	NM_007781	12984	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	0.020000	0.552239	
mm_81404.1	chr9	109050997	109051197	+	1	NA	NA	NA	-3769	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.020000	0.502488	81(CCTCATATGCGC,+,0.00)
mm_113890.1	chr13	49190255	49190455	+	1	NA	NA	NA	2808	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.025000	0.557214	
mm_69107.1	chr7	127021078	127021278	-	1	NA	NA	NA	33	NM_001102563	69017	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.060000	0.676617	
mm_25397.1	chr3	107230513	107230713	+	1	NA	NA	NA	-1	NM_001256174	319929	Mm.30453	NM_001256174	ENSMUSG00000094613	A630076J17Rik	-	RIKEN cDNA A630076J17 gene	protein-coding	0.005000	0.487562	
mm_145843.1	chr18	65448087	65448287	+	1	NA	NA	NA	17190	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.378109	
mm_156516.1	chrX	150566515	150566715	+	1	NA	NA	NA	-19170	NR_106147	102465782		NR_106147	ENSMUSG00000099172	Mir3620	Gm27984|mmu-mir-3620	microRNA 3620	ncRNA	0.015000	0.532338	
mm_72011.1	chr8	70703389	70703589	+	1	NA	NA	NA	5750	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.015000	0.572139	
mm_150626.1	chr19	41336892	41337092	+	1	NA	NA	NA	48078	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.015000	0.537313	
mm_143366.1	chr17	67354409	67354609	-	1	NA	NA	NA	-50	NM_008984	19274	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.155000	0.810945	
mm_170115.1	chr17	39845588	39845788	+	1	NA	NA	NA	2691	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.135000	0.746269	
mm_32983.1	chr4	120136161	120136361	+	1	NA	NA	NA	-24945	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.005000	0.512438	
mm_160279.1	chr7	121391779	121391979	+	1	NA	NA	NA	-417	NM_001081327	195646	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0.020000	0.517413	
mm_135370.1	chr16	44065269	44065469	-	1	NA	NA	NA	-37424	NM_001172107	207798	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.025000	0.542289	
mm_152187.1	chr19	7432403	7432603	-	1	NA	NA	NA	9930	NR_105957	102466781		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	0.025000	0.477612	
mm_101419.1	chr11	29526261	29526461	-	1	NA	NA	NA	-36	NM_001282120	76784	Mm.285429	NM_133767	ENSMUSG00000020459	Mtif2	2310038D14Rik|2410112O06Rik|IF-2(Mt)|IF-2mt|IF2(mt)	mitochondrial translational initiation factor 2	protein-coding	0.050000	0.631841	
mm_48543.1	chr5	142905312	142905512	-	1	NA	NA	NA	1342	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.025000	0.542289	
mm_7157.1	chr1	91458181	91458381	-	1	NA	NA	NA	1047	NM_011066	18627	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.005000	0.532338	
mm_55224.1	chr6	52233385	52233585	-	1	NA	NA	NA	1454	NM_008263	15395	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0.060000	0.492537	
mm_131219.1	chr16	8839428	8839628	+	1	NA	NA	NA	9428	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.025000	0.512438	
mm_168136.1	chr10	29699251	29699451	-	1	NA	NA	NA	-163484	NM_028351	72780	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0.075000	0.517413	
mm_135740.1	chr16	55838740	55838940	-	1	NA	NA	NA	-199	NM_001159395	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.085000	0.626866	
mm_166564.1	chr6	48747571	48747771	-	1	NA	NA	NA	1474	NM_175035	317757	Mm.455917	NM_175035	ENSMUSG00000043505	Gimap5	D630024P16|E230026N22Rik	GTPase, IMAP family member 5	protein-coding	0.010000	0.517413	
mm_112390.1	chr12	119238390	119238590	-	1	NA	NA	NA	-214	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.060000	0.616915	
mm_109200.1	chr12	108652860	108653060	+	1	NA	NA	NA	-5660	NR_029771	723909		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.010000	0.447761	
mm_81798.1	chr9	115311068	115311268	+	1	NA	NA	NA	-747	NM_024222	68292	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0.025000	0.383085	
mm_10600.1	chr2	18698874	18699074	+	1	NA	NA	NA	-48	NM_001001334	381350	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	0.090000	0.626866	
mm_19901.1	chr2	114146948	114147148	-	1	NA	NA	NA	3522	NR_105968	102465982		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	0.035000	0.537313	
mm_151804.1	chr19	5424866	5425066	-	1	NA	NA	NA	13	NM_024176	66556	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	0.120000	0.711443	
mm_26290.1	chr3	142506724	142506924	+	1	NA	NA	NA	9890	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.020000	0.497512	
mm_72604.1	chr8	84416452	84416652	+	1	NA	NA	NA	1188	NM_001252061	12286	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.010000	0.487562	
mm_140341.1	chr17	86823598	86823798	+	1	NA	NA	NA	69834	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.020000	0.577114	
mm_5721.1	chr1	44102243	44102443	-	1	NA	NA	NA	45	NM_029368	75623	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0.140000	0.731343	
mm_23455.1	chr3	60472127	60472327	+	1	NA	NA	NA	-603	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.422886	
mm_94431.1	chr11	6291960	6292160	+	1	NA	NA	NA	463	NM_001252283	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.135000	0.731343	
mm_55545.1	chr6	70951198	70951398	-	1	NA	NA	NA	-5308	NM_001101464	232077	Mm.297656	NM_001101464	ENSMUSG00000055874	Foxi3	-	forkhead box I3	protein-coding	0.005000	0.452736	
mm_63961.1	chr7	139943744	139943944	+	1	NA	NA	NA	-12	NM_009482	22286	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	0.090000	0.671642	
mm_45061.1	chr5	41844181	41844381	-	1	NA	NA	NA	34	NM_001310601	665775	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0.090000	0.661692	
mm_74866.1	chr8	24955132	24955332	-	1	NA	NA	NA	-6428	NM_153397	353188	Mm.269223	NM_153397	ENSMUSG00000037437	Adam32	-	a disintegrin and metallopeptidase domain 32	protein-coding	0.000000	0.303483	
mm_45769.1	chr5	86917375	86917575	-	1	NA	NA	NA	9028	NM_152811	71773	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0.005000	0.457711	
mm_149943.1	chr19	27321661	27321861	+	1	NA	NA	NA	-858	NM_183179	240595	Mm.269759	NM_183179	ENSMUSG00000047298	Kcnv2	KV11.1	potassium channel, subfamily V, member 2	protein-coding	0.005000	0.383085	
mm_104099.1	chr11	86695237	86695437	-	1	NA	NA	NA	11256	NM_001098810	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.010000	0.348259	
mm_34711.1	chr4	152116297	152116497	+	1	NA	NA	NA	54	NM_033042	85030	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0.015000	0.601990	
mm_9134.1	chr1	170845694	170845894	-	1	NA	NA	NA	21977	NM_001081304	226641	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.020000	0.412935	
mm_21.1	chr1	5094038	5094238	+	1	NA	NA	NA	11052	NM_001310442	108664	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	0.000000	0.303483	
mm_62984.1	chr7	120203879	120204079	+	1	NA	NA	NA	15	NM_026458	67928	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	0.100000	0.676617	
mm_22659.1	chr3	14871603	14871803	+	1	NA	NA	NA	8165	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.020000	0.582090	
mm_135943.1	chr16	74411323	74411523	-	1	NA	NA	NA	-511	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.050000	0.552239	
mm_59865.1	chr7	30184071	30184271	+	1	NA	NA	NA	0	NM_009944	12865	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	0.045000	0.582090	
mm_146919.1	chr18	31609810	31610010	-	1	NA	NA	NA	-8	NM_026165	67453	Mm.23896	NM_026165	ENSMUSG00000024259	Slc25a46	1200007B05Rik|AI325987	solute carrier family 25, member 46	protein-coding	0.110000	0.671642	
mm_9527.1	chr1	173782890	173783090	-	1	NA	NA	NA	-16071	NM_008329	15951	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.015000	0.457711	
mm_154659.1	chrX	7841998	7842198	+	1	NA	NA	NA	16	NM_001290537	54644	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	0.120000	0.671642	
mm_49361.1	chr6	22875430	22875630	+	1	NA	NA	NA	28	NM_001081306	19283	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding	0.140000	0.781095	
mm_90827.1	chr10	7956005	7956205	-	1	NA	NA	NA	18	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.140000	0.830846	
mm_59004.1	chr7	19181116	19181316	+	1	NA	NA	NA	46	NM_028153	72205	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0.075000	0.671642	
mm_169148.1	chr13	62558531	62558731	-	1	NA	NA	NA	-32	NM_001162911	77117	Mm.470091	NM_175252	ENSMUSG00000074865	Zfp934	6720457D02Rik	zinc finger protein 934	protein-coding	0.040000	0.547264	
mm_166677.1	chr6	97827215	97827415	+	1	NA	NA	NA	20257	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.457711	-53(CCTCATTAAAGG,-,0.00)
mm_58430.1	chr7	3297417	3297617	+	1	NA	NA	NA	4489	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.045000	0.522388	
mm_42989.1	chr5	123310411	123310611	+	1	NA	NA	NA	-33937	NM_029850	77045	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0.020000	0.552239	
mm_158363.1	chrX	134806565	134806765	-	1	NA	NA	NA	2556	NM_001166397	67416	Mm.285969	NM_026139	ENSMUSG00000033436	Armcx2	3230401N03Rik|AI043003|ALEX2	armadillo repeat containing, X-linked 2	protein-coding	0.025000	0.562189	
mm_115398.1	chr13	113794559	113794759	+	1	NA	NA	NA	151	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.085000	0.597015	
mm_129700.1	chr15	81697177	81697377	-	1	NA	NA	NA	10	NM_001164320	214685	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0.015000	0.597015	
mm_140733.1	chr17	15564241	15564441	-	1	NA	NA	NA	-1018	NM_144809	213389	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	0.065000	0.621891	
mm_137993.1	chr17	33638000	33638200	+	1	NA	NA	NA	5	NR_028279	378460	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	0.015000	0.567164	
mm_83827.1	chr9	53975258	53975458	-	1	NA	NA	NA	-57	NM_177769	270162	Mm.259791	NM_177769	ENSMUSG00000041986	Elmod1	4831417L10|AI428506|AI834991	ELMO/CED-12 domain containing 1	protein-coding	0.090000	0.681592	
mm_112675.1	chr13	16027531	16027731	+	1	NA	NA	NA	15780	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.442786	-41(GAGTTTTAAAGG,-,0.00),-39(GTTTTAAAGGGC,+,0.00)
mm_83324.1	chr9	44196404	44196604	-	1	NA	NA	NA	37542	NM_007619	12402	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.010000	0.487562	
mm_74749.1	chr8	19026466	19026666	-	1	NA	NA	NA	-37	NM_183036	360212	Mm.271558	NM_183036	ENSMUSG00000053790	Defb38	BD-38	defensin beta 38	protein-coding	0.000000	0.452736	
mm_106445.1	chr11	119863334	119863534	-	1	NA	NA	NA	-18855	NR_039557	100628577		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.020000	0.572139	
mm_9982.1	chr1	191239504	191239704	-	1	NA	NA	NA	-56271	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.005000	0.472637	
mm_144832.1	chr18	36366475	36366675	+	1	NA	NA	NA	17951	NM_001081365	66060	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.020000	0.567164	
mm_147098.1	chr18	35654245	35654445	-	1	NA	NA	NA	854	NM_001270646	381148	Mm.297784	NM_001270646	ENSMUSG00000073600	Prob1	Gm1614	proline rich basic protein 1	protein-coding	0.075000	0.606965	
mm_113659.1	chr13	42681463	42681663	+	1	NA	NA	NA	764	NM_001302635	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.025000	0.437811	
mm_72010.1	chr8	70703354	70703554	+	1	NA	NA	NA	5715	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.010000	0.582090	
mm_74593.1	chr8	11557894	11558094	-	1	NA	NA	NA	-416	NM_001302459	26356	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.070000	0.587065	
mm_128558.1	chr15	55906837	55907037	-	1	NA	NA	NA	12	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding	0.070000	0.651741	
mm_24339.1	chr3	89735603	89735803	+	1	NA	NA	NA	4985	NM_019655	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.025000	0.552239	
mm_99733.1	chr11	106305935	106306135	+	1	NA	NA	NA	-4139	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.015000	0.497512	
mm_35095.1	chr4	8673625	8673825	-	1	NA	NA	NA	-16681	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.055000	0.562189	
mm_31884.1	chr4	82065830	82066030	+	1	NA	NA	NA	550	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	0.010000	0.522388	
mm_134366.1	chr16	17111130	17111330	-	1	NA	NA	NA	22	NM_001252445	66053	Mm.253614	NM_144954	ENSMUSG00000022771	Ppil2	0610009L05Rik|1700016N17Rik|4921520K19Rik|4930511F14Rik|AA589416|C130078A06Rik|CYC4	peptidylprolyl isomerase (cyclophilin)-like 2	protein-coding	0.045000	0.552239	
mm_3152.1	chr1	135154326	135154526	+	1	NA	NA	NA	7592	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.050000	0.572139	
mm_53545.1	chr6	136827705	136827905	+	1	NA	NA	NA	411	NM_021714	60321	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	0.130000	0.716418	
mm_37581.1	chr4	126325547	126325747	-	1	NA	NA	NA	-448	NM_011902	24084	Mm.23895	NM_011902	ENSMUSG00000028845	Tekt2	AU014974|tektin-t	tektin 2	protein-coding	0.065000	0.646766	
mm_31071.1	chr4	41355769	41355969	+	1	NA	NA	NA	6873	NM_023305	67123	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.005000	0.407960	
mm_8917.1	chr1	163313569	163313769	-	1	NA	NA	NA	-19	NM_175686	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.030000	0.527363	
mm_72624.1	chr8	84650269	84650469	+	1	NA	NA	NA	12483	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.000000	0.542289	
mm_30924.1	chr4	32750593	32750793	+	1	NA	NA	NA	-49566	NM_175364	108755	Mm.1182	NM_175364	ENSMUSG00000045854	Lyrm2	2610208E05Rik	LYR motif containing 2	protein-coding	0.005000	0.343284	
mm_135313.1	chr16	38713170	38713370	-	1	NA	NA	NA	-235	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.105000	0.701493	
mm_90637.1	chr10	128498877	128499077	+	1	NA	NA	NA	-270	NR_131150	654440	Mm.441262	NR_131150	ENSMUSG00000097353	A430046D13Rik	-	Riken cDNA A430046D13 gene	ncRNA	0.070000	0.552239	
mm_105051.1	chr11	100650630	100650830	-	1	NA	NA	NA	-37	NM_177790	278304	Mm.274734	NM_177790	ENSMUSG00000014198	Zfp385c	A930006D11Rik|Znf385c	zinc finger protein 385C	protein-coding	0.010000	0.577114	
mm_17039.1	chr2	20671618	20671818	-	1	NA	NA	NA	152205	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.020000	0.507463	
mm_150617.1	chr19	40993103	40993303	+	1	NA	NA	NA	1332	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.010000	0.442786	
mm_142605.1	chr17	46812065	46812265	-	1	NA	NA	NA	19248	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.005000	0.442786	85(CCTTTTAGAACA,+,0.00)
mm_98447.1	chr11	94943658	94943858	+	1	NA	NA	NA	7534	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.025000	0.592040	
mm_91595.1	chr10	40350016	40350216	-	1	NA	NA	NA	808	NM_001291816	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.070000	0.656716	
mm_87680.1	chr10	59223418	59223618	+	1	NA	NA	NA	1596	NM_172939	268301	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.030000	0.472637	4(GTCTCTTAGAGG,-,0.00),5(TCTCTTAGAGGC,+,0.00)
mm_31168.1	chr4	43452350	43452550	+	1	NA	NA	NA	2176	NM_001110320	12517	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.030000	0.572139	
mm_20788.1	chr2	143990099	143990299	-	1	NA	NA	NA	21064	NM_133626	81910	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.030000	0.517413	
mm_44337.1	chr5	15883724	15883924	-	1	NA	NA	NA	-58	NR_045974	75058	Mm.183467	NR_045974	ENSMUSG00000105185	4930519H02Rik	-	RIKEN cDNA 4930519H02 gene	ncRNA	0.000000	0.452736	54(CCCTATTTATGC,-,0.00)
mm_31530.1	chr4	55044805	55045005	+	1	NA	NA	NA	96960	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.000000	0.412935	
mm_146755.1	chr18	16768723	16768923	-	1	NA	NA	NA	40423	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.000000	0.537313	
mm_118972.1	chr14	27876307	27876507	+	1	NA	NA	NA	254000	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	0.020000	0.512438	
mm_68089.1	chr7	101903685	101903885	-	1	NA	NA	NA	0	NM_001282088	791260	Mm.475469	NM_001081679	ENSMUSG00000078630	Tomt	Comt2|F930017I19Rik	transmembrane O-methyltransferase	protein-coding	0.005000	0.507463	
mm_24055.1	chr3	87906823	87907023	+	1	NA	NA	NA	73	NM_001331052	15191	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0.125000	0.731343	
mm_11192.1	chr2	29122660	29122860	+	1	NA	NA	NA	-2232	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.015000	0.497512	
mm_136614.1	chr17	5343875	5344075	+	1	NA	NA	NA	74792	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.005000	0.218905	
mm_110811.1	chr12	72236575	72236775	-	1	NA	NA	NA	52	NM_001007596	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.150000	0.771144	
mm_150295.1	chr19	34524651	34524851	+	1	NA	NA	NA	2723	NM_001111100	16889	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.025000	0.477612	
mm_119349.1	chr14	41106753	41106953	+	1	NA	NA	NA	1820	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.000000	0.427861	
mm_9244.1	chr1	171345322	171345522	-	1	NA	NA	NA	223	NM_001242580	27045	Mm.12915	NM_012049	ENSMUSG00000013997	Nit1	AI255805|ESTM30|W57327	nitrilase 1	protein-coding	0.045000	0.542289	65(GGGTATAAGGGG,-,0.00)
mm_59127.1	chr7	19946032	19946232	+	1	NA	NA	NA	4611	NM_027308	70080	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	0.015000	0.487562	
mm_112672.1	chr13	16027454	16027654	+	1	NA	NA	NA	15703	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.447761	36(GAGTTTTAAAGG,-,0.00),38(GTTTTAAAGGGC,+,0.00)
mm_74419.1	chr8	3625193	3625393	-	1	NA	NA	NA	-11	NM_008790	18545	Mm.440882	NM_008790	ENSMUSG00000004630	Pcp2	L7|Pcp-2	Purkinje cell protein 2 (L7)	protein-coding	0.000000	0.492537	-22(GAGTATAAGAGC,-,0.00)
mm_122288.1	chr14	34503262	34503462	-	1	NA	NA	NA	-816	NM_009758	12166	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK3|AU045487|BMPR-IA|Bmpr	bone morphogenetic protein receptor, type 1A	protein-coding	0.085000	0.597015	-27(GTATTTATAGTC,+,0.00)
mm_107787.1	chr12	61586096	61586296	+	1	NA	NA	NA	63029	NM_001310586	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.005000	0.273632	
mm_129384.1	chr15	78191527	78191727	-	1	NA	NA	NA	12610	NM_001330686	19293	Mm.2766	NM_013645	ENSMUSG00000005716	Pvalb	PV|Parv|Pva	parvalbumin	protein-coding	0.035000	0.517413	
mm_30232.1	chr3	145924816	145925016	-	1	NA	NA	NA	654	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.075000	0.597015	
mm_171507.1	chr4	146270321	146270521	+	1	NA	NA	NA	36	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.030000	0.527363	
mm_104516.1	chr11	96006901	96007101	-	1	NA	NA	NA	-1057	NM_009951	140486	Mm.294769	NM_009951	ENSMUSG00000013415	Igf2bp1	AL024068|AW549074|CRD-BP|Crdbp|D030026A21Rik|D11Moh40e|D11Moh45|IMP-1|IMP1|Neilsen|ZBP-1|Zbp1|mir-3063	insulin-like growth factor 2 mRNA binding protein 1	protein-coding	0.085000	0.686567	
mm_125437.1	chr15	44619071	44619271	+	1	NA	NA	NA	-470	NM_019480	55960	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0.125000	0.741294	
mm_128159.1	chr15	33073459	33073659	-	1	NA	NA	NA	-9570	NM_018755	54381	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0.010000	0.462687	-32(CTTTAAATACCC,+,0.00)
mm_73788.1	chr8	117256592	117256792	+	1	NA	NA	NA	-327	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.180000	0.771144	
mm_109384.1	chr12	109734871	109735071	+	1	NA	NA	NA	-10	NR_028265	100040724	Mm.260543	NR_028265	ENSMUSG00000097391	Mirg	2810474H01Rik|AI852992|Gm2928|Meg9|mir-410	miRNA containing gene	ncRNA	0.025000	0.477612	
mm_32808.1	chr4	117124857	117125057	+	1	NA	NA	NA	768	NR_024078	78611	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0.035000	0.507463	
mm_95759.1	chr11	54906679	54906879	+	1	NA	NA	NA	3925	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.010000	0.547264	
mm_2633.1	chr1	121486846	121487046	+	1	NA	NA	NA	41519	NM_010483	15564	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	0.015000	0.502488	
mm_21415.1	chr2	158124192	158124392	-	1	NA	NA	NA	22100	NM_009373	21817	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.060000	0.592040	
mm_3001.1	chr1	133255146	133255346	+	1	NA	NA	NA	9149	NM_182930	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding	0.010000	0.393035	
mm_68499.1	chr7	111078462	111078662	-	1	NA	NA	NA	4468	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.010000	0.388060	-56(CTGTTTAAAGGG,-,0.00)
mm_155346.1	chrX	68678555	68678755	+	1	NA	NA	NA	114	NM_001290424	14265	Mm.3451	NM_008031	ENSMUSG00000000838	Fmr1	FMRP|Fmr-1	fragile X mental retardation syndrome 1	protein-coding	0.160000	0.761194	
mm_51197.1	chr6	71284002	71284202	+	1	NA	NA	NA	12083	NM_145568	57896	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	0.000000	0.422886	
mm_121041.1	chr14	80021186	80021386	+	1	NA	NA	NA	20984	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding	0.025000	0.462687	
mm_114918.1	chr13	95323504	95323704	+	1	NA	NA	NA	-1	NM_001302538	72114	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	0.030000	0.517413	-33(GCCTATATAAGG,-,0.00)
mm_49865.1	chr6	38551719	38551919	+	1	NA	NA	NA	485	NM_001170848	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.135000	0.771144	
mm_127847.1	chr15	7398178	7398378	-	1	NA	NA	NA	112	NM_001289496	268780	Mm.203208	NM_178748	ENSMUSG00000042961	Egflam	5930412K08|AU040377	EGF-like, fibronectin type III and laminin G domains	protein-coding	0.080000	0.691542	-25(GCCCCGAAAAGC,-,0.00)
mm_25432.1	chr3	107895824	107896024	+	1	NA	NA	NA	70	NM_010360	14866	Mm.282351	NM_010360	ENSMUSG00000004032	Gstm5	-	glutathione S-transferase, mu 5	protein-coding	0.070000	0.606965	
mm_66440.1	chr7	44816860	44817060	-	1	NA	NA	NA	-302	NR_033136	107503	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	0.060000	0.482587	
mm_90569.1	chr10	128231649	128231849	+	1	NA	NA	NA	-314	NM_001164080	21853	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0.005000	0.383085	
mm_15718.1	chr2	164047572	164047772	+	1	NA	NA	NA	22448	NM_001114079	381404	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	0.010000	0.522388	
mm_151615.1	chr19	3900762	3900962	-	1	NA	NA	NA	4368	NM_016921	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.000000	0.363184	
mm_106432.1	chr11	119392017	119392217	-	1	NA	NA	NA	1645	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.030000	0.601990	
mm_106725.1	chr12	3872993	3873193	+	1	NA	NA	NA	-10849	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.000000	0.557214	
mm_159104.1	chr2	37442986	37443186	-	1	NA	NA	NA	35	NM_199025	320633	Mm.383299	NM_199025	ENSMUSG00000050714	Zbtb26	A630026F21Rik	zinc finger and BTB domain containing 26	protein-coding	0.060000	0.686567	
mm_87413.1	chr10	46526093	46526293	+	1	NA	NA	NA	281444	NR_028276	108637		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0.000000	0.457711	49(CCTTTTATAAAT,+,0.00)
mm_127810.1	chr15	5045951	5046151	-	1	NA	NA	NA	17722	NM_001243837	109828	Mm.208034	NM_001243837	ENSMUSG00000079105	C7	A530026G17|Gm1238	complement component 7	protein-coding	0.015000	0.507463	
mm_158682.1	chrX	160138305	160138505	-	1	NA	NA	NA	25	NM_008810	18597	Mm.34775	NM_008810	ENSMUSG00000031299	Pdha1	Pdha-1	pyruvate dehydrogenase E1 alpha 1	protein-coding	0.110000	0.661692	
mm_138079.1	chr17	33955988	33956188	+	1	NA	NA	NA	206	NM_172620	224705	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	0.060000	0.606965	
mm_121474.1	chr14	121035101	121035301	+	1	NA	NA	NA	-373	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.095000	0.626866	
mm_124825.1	chr15	9073085	9073285	+	1	NA	NA	NA	1925	NM_001040395	68646	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.015000	0.407960	
mm_173061.1	chrX	128714641	128714841	-	1	NA	NA	NA	-336783	NR_045441	75274	Mm.108718	NR_045441	ENSMUSG00000086244	4930558G05Rik	-	RIKEN cDNA 4930558G05 gene	ncRNA	0.035000	0.422886	
mm_109993.1	chr12	15814646	15814846	-	1	NA	NA	NA	2039	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.020000	0.507463	50(GCCTTTTAAAAG,-,0.00),51(CCTTTTAAAAGA,+,0.00),51(CCTTTTAAAAGA,-,0.00),52(CTTTTAAAAGAG,+,0.00)
mm_75831.1	chr8	70510272	70510472	-	1	NA	NA	NA	-5	NM_019883	22186	Mm.297372	NM_019883	ENSMUSG00000090137	Uba52	D8Ertd21e|Gm1863|Rps27a|Ubb|Ubc	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding	0.140000	0.711443	
mm_70217.1	chr7	144939717	144939917	-	1	NA	NA	NA	108	NM_007631	12443	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.090000	0.621891	
mm_139396.1	chr17	52304407	52304607	+	1	NA	NA	NA	-298202	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.010000	0.507463	
mm_86918.1	chr10	23851372	23851572	+	1	NA	NA	NA	10	NM_011979	26464	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	0.015000	0.432836	
mm_88553.1	chr10	78596467	78596667	+	1	NA	NA	NA	-4603	NM_027875	71709	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	0.010000	0.472637	-33(GAGTATAAATAG,-,0.00)
mm_24905.1	chr3	96219685	96219885	+	1	NA	NA	NA	-131	NM_178213	621893		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	0.020000	0.412935	
mm_37382.1	chr4	120975510	120975710	-	1	NA	NA	NA	-2288	NR_105982	102465614		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.005000	0.502488	
mm_114179.1	chr13	55634919	55635119	+	1	NA	NA	NA	20	NM_001282055	212880	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	0.095000	0.651741	
mm_57162.1	chr6	122779868	122780068	-	1	NA	NA	NA	-37223	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.015000	0.517413	-36(TCCTTTATAGCC,+,0.00)
mm_38658.1	chr4	143457899	143458099	-	1	NA	NA	NA	-7675	NM_001347238	242737	Mm.148643	NM_173773	ENSMUSG00000047799	Oog4	E330017M15	oogenesin 4	protein-coding	0.010000	0.497512	
mm_26690.1	chr3	156666457	156666657	+	1	NA	NA	NA	104763	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.000000	0.422886	
mm_12663.1	chr2	75658974	75659174	+	1	NA	NA	NA	-185	NM_146130	229279	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.175000	0.726368	
mm_107825.1	chr12	69168724	69168924	+	1	NA	NA	NA	10	NM_001081406	69706	Mm.28847	NM_027178	ENSMUSG00000034883	Lrr1	2410005L11Rik|AU021780|LRR-1|Ppil5	leucine rich repeat protein 1	protein-coding	0.070000	0.621891	
mm_58821.1	chr7	16615514	16615714	+	1	NA	NA	NA	-621	NM_172739	232906	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.050000	0.606965	
mm_113758.1	chr13	44741385	44741585	+	1	NA	NA	NA	10214	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.000000	0.398010	
mm_153308.1	chr19	38024238	38024438	-	1	NA	NA	NA	19239	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.010000	0.328358	
mm_33040.1	chr4	122933163	122933363	+	1	NA	NA	NA	27925	NM_029662	76574	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.010000	0.432836	
mm_119554.1	chr14	48655212	48655412	+	1	NA	NA	NA	7560	NM_144841	18424	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	0.050000	0.587065	
mm_79110.1	chr9	46269816	46270016	+	1	NA	NA	NA	1308	NM_080434	66113	Mm.29738	NM_080434	ENSMUSG00000032079	Apoa5	1300007O05Rik|Apoav|RAP3	apolipoprotein A-V	protein-coding	0.030000	0.626866	
mm_39122.1	chr4	155019287	155019487	-	1	NA	NA	NA	-8403	NM_001113360	269615	Mm.379458	NM_175556	ENSMUSG00000029055	Plch2	A930027K05Rik|PLCeta2|Plc-eta2|Plcl4	phospholipase C, eta 2	protein-coding	0.040000	0.621891	
mm_49869.1	chr6	38560126	38560326	+	1	NA	NA	NA	4503	NM_001331223	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.015000	0.368159	
mm_120166.1	chr14	60763686	60763886	+	1	NA	NA	NA	-4348	NM_183175	239126	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	0.020000	0.402985	
mm_60095.1	chr7	35119193	35119393	+	1	NA	NA	NA	0	NM_001287521	12606	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.135000	0.731343	-33(CTCTATAAAAGC,-,0.00)
mm_24862.1	chr3	95929189	95929389	+	1	NA	NA	NA	32	NM_023210	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.070000	0.621891	
mm_150654.1	chr19	41932736	41932936	+	1	NA	NA	NA	478	NM_001164561	66583	Mm.289086	NM_025644	ENSMUSG00000034321	Exosc1	2610035C18Rik|2610104C07Rik|2610312F07Rik|AI447561	exosome component 1	protein-coding	0.055000	0.552239	
mm_172920.1	chr9	67049191	67049391	-	1	NA	NA	NA	-78	NM_001164251	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.070000	0.646766	
mm_44850.1	chr5	34215048	34215248	-	1	NA	NA	NA	-27438	NM_010753	17122	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.010000	0.393035	
mm_40846.1	chr5	73306571	73306771	+	1	NA	NA	NA	13877	NM_001159888	68095	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	0.020000	0.437811	
mm_22146.1	chr2	172370427	172370627	-	1	NA	NA	NA	43	NM_001291185	20878	Mm.249363	NM_011497	ENSMUSG00000027496	Aurka	AIRK1|ARK-1|AU019385|AW539821|Ark1|Aurora-A|Ayk1|IAK|IAK1|Stk6	aurora kinase A	protein-coding	0.040000	0.542289	-29(TATTTTAAAAGG,-,0.00)
mm_15411.1	chr2	156775356	156775556	+	1	NA	NA	NA	-8	NM_172118	98932	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0.070000	0.651741	
mm_69532.1	chr7	135693353	135693553	-	1	NA	NA	NA	22926	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.015000	0.427861	
mm_143514.1	chr17	72939827	72940027	-	1	NA	NA	NA	21622	NM_029999	77889	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.000000	0.417910	12(CTCTTTAAAAGT,-,0.00),13(TCTTTAAAAGTG,+,0.00)
mm_136123.1	chr16	85900518	85900718	-	1	NA	NA	NA	507	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0.015000	0.378109	
mm_131540.1	chr16	17763802	17764002	+	1	NA	NA	NA	4281	NM_145479	224023	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	0.005000	0.427861	
mm_107283.1	chr12	29783534	29783734	+	1	NA	NA	NA	-97189	NR_046080	328075	Mm.447832	NR_046080		C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	0.035000	0.552239	
mm_42687.1	chr5	119835000	119835200	+	1	NA	NA	NA	437	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.025000	0.552239	
mm_48433.1	chr5	140622974	140623174	-	1	NA	NA	NA	15733	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.030000	0.636816	
mm_2474.1	chr1	105780628	105780828	+	1	NA	NA	NA	5	NM_009399	21934	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.190000	0.840796	
mm_20065.1	chr2	120368694	120368894	-	1	NA	NA	NA	-15661	NR_027618	269338	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	0.000000	0.383085	
mm_163114.1	chr11	72540455	72540655	-	1	NA	NA	NA	9691	NM_029932	77577	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	0.015000	0.587065	
mm_147570.1	chr18	55131159	55131359	-	1	NA	NA	NA	-141079	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.025000	0.517413	
mm_27642.1	chr3	63862719	63862919	-	1	NA	NA	NA	-11828	NM_001177732	269437	Mm.316391	NM_183191	ENSMUSG00000036834	Plch1	BC042549|PLC-eta-1|PLCeta1|Plcl3	phospholipase C, eta 1	protein-coding	0.020000	0.462687	
mm_151343.1	chr19	55895394	55895594	+	1	NA	NA	NA	173	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.090000	0.691542	
mm_8411.1	chr1	152053122	152053322	-	1	NA	NA	NA	37098	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik|ENSMUSG00000073540	RIKEN cDNA 1700025G04 gene	protein-coding	0.005000	0.472637	
mm_11963.1	chr2	53191373	53191573	+	1	NA	NA	NA	-286	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.095000	0.706468	
mm_100737.1	chr11	4095235	4095435	-	1	NA	NA	NA	96	NM_026443	67900	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0.075000	0.616915	
mm_40915.1	chr5	75640853	75641053	+	1	NA	NA	NA	65962	NM_021099	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	KIT proto-oncogene receptor tyrosine kinase	protein-coding	0.025000	0.457711	
mm_80032.1	chr9	68736924	68737124	+	1	NA	NA	NA	-28322	NR_033299	320440	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.010000	0.482587	
mm_46381.1	chr5	103977248	103977448	-	1	NA	NA	NA	40	NM_198030	243168	Mm.284944	NM_198030	ENSMUSG00000034528	Hsd17b13	AI047820|PAN1B-like|Pan1b	hydroxysteroid (17-beta) dehydrogenase 13	protein-coding	0.010000	0.502488	
mm_25033.1	chr3	98160546	98160746	+	1	NA	NA	NA	12	NM_027665	71078	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.065000	0.621891	
mm_91521.1	chr10	37138687	37138887	-	1	NA	NA	NA	139	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.030000	0.378109	
mm_89015.1	chr10	82048025	82048225	+	1	NA	NA	NA	2	NM_001319203	408062	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	0.035000	0.557214	
mm_48224.1	chr5	137645571	137645771	-	1	NA	NA	NA	43	NM_010571	16369	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	0.020000	0.611940	
mm_47038.1	chr5	116021639	116021839	-	1	NA	NA	NA	2689	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.035000	0.542289	
mm_42151.1	chr5	111429142	111429342	+	1	NA	NA	NA	11076	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.015000	0.517413	
mm_165303.1	chr2	94412568	94412768	-	1	NA	NA	NA	5961	NR_027831	66457	Mm.402557	NR_027831		2810002D19Rik	-	RIKEN cDNA 2810002D19 gene	ncRNA	0.005000	0.398010	
mm_35621.1	chr4	43454442	43454642	-	1	NA	NA	NA	84	NM_001110320	12517	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.030000	0.552239	
mm_134484.1	chr16	18626342	18626542	-	1	NA	NA	NA	3496	NM_213614	18951	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.140000	0.751244	
mm_153664.1	chr19	44395717	44395917	-	1	NA	NA	NA	11892	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.447761	
mm_121612.1	chr14	8258885	8259085	-	1	NA	NA	NA	34	NM_053115	93732	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0.005000	0.522388	
mm_81976.1	chr9	121298688	121298888	+	1	NA	NA	NA	-21616	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.010000	0.582090	
mm_57605.1	chr6	128025602	128025802	-	1	NA	NA	NA	117876	NM_175414	109246	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597	tetraspanin 9	protein-coding	0.040000	0.467662	
mm_95710.1	chr11	54495937	54496137	+	1	NA	NA	NA	-26808	NM_001252494	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.000000	0.328358	
mm_166721.1	chr6	120465146	120465346	+	1	NA	NA	NA	2049	NM_008359	16172	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.000000	0.417910	
mm_127825.1	chr15	6429826	6430026	-	1	NA	NA	NA	-15407	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.035000	0.497512	
mm_109535.1	chr12	111543576	111543776	+	1	NA	NA	NA	2730	NR_033168	100316932	Mm.484709	NR_033168	ENSMUSG00000064493	Snora28	MBI-13	small nucleolar RNA, H/ACA box 28	snoRNA	0.010000	0.432836	
mm_63876.1	chr7	136353264	136353464	+	1	NA	NA	NA	-3949	NR_040459	330664	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0.015000	0.507463	
mm_90228.1	chr10	121365018	121365218	+	1	NA	NA	NA	28	NM_029364	75612	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.130000	0.761194	
mm_7717.1	chr1	130661401	130661601	-	1	NA	NA	NA	117	NM_007576	12269	Mm.306720	NM_007576	ENSMUSG00000026405	C4bp	AI195242|C4bpa	complement component 4 binding protein	protein-coding	0.005000	0.467662	
mm_123443.1	chr14	64949717	64949917	-	1	NA	NA	NA	40	NM_177338	219150	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.030000	0.606965	
mm_94578.1	chr11	11690174	11690374	+	1	NA	NA	NA	97	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.015000	0.562189	
mm_7666.1	chr1	128561520	128561720	-	1	NA	NA	NA	30679	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.025000	0.467662	
mm_152468.1	chr19	10949158	10949358	-	1	NA	NA	NA	8	NM_023731	108673	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0.095000	0.616915	
mm_59434.1	chr7	27130287	27130487	+	1	NA	NA	NA	10432	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.025000	0.527363	
mm_124428.1	chr14	118236551	118236751	-	1	NA	NA	NA	379	NM_177753	223227	Mm.70950	NM_177753	ENSMUSG00000061517	Sox21	Sox25	SRY (sex determining region Y)-box 21	protein-coding	0.135000	0.751244	
mm_147185.1	chr18	36783069	36783269	-	1	NA	NA	NA	36	NM_008214	15115	Mm.10528	NM_008214	ENSMUSG00000001380	Hars	MMHRS	histidyl-tRNA synthetase	protein-coding	0.065000	0.597015	
mm_122718.1	chr14	52278931	52279131	-	1	NA	NA	NA	-115	NM_023434	268741	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	0.090000	0.681592	
mm_113264.1	chr13	28951357	28951557	+	1	NA	NA	NA	2225	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.060000	0.552239	
mm_40125.1	chr5	34989651	34989851	+	1	NA	NA	NA	-9327	NM_001163512	71729	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.040000	0.512438	
mm_24872.1	chr3	95977326	95977526	+	1	NA	NA	NA	-8084	NR_045872	668224	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0.000000	0.497512	0(GCTTTAATGTGC,+,0.00),22(TCCTTTTTAAAG,-,0.00),24(CTTTTTAAAGTG,+,0.00)
mm_55769.1	chr6	78467460	78467660	-	1	NA	NA	NA	1314	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.010000	0.497512	
mm_77762.1	chr9	3000103	3000303	+	1	NA	NA	NA	38540	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.010000	0.343284	
mm_15851.1	chr2	164777427	164777627	+	1	NA	NA	NA	2207	NM_009394	21925	Mm.1716	NM_009394	ENSMUSG00000017300	Tnnc2	Tncs	troponin C2, fast	protein-coding	0.035000	0.542289	
mm_95994.1	chr11	59204548	59204748	+	1	NA	NA	NA	2162	NM_001302336	67212	Mm.282694	NM_026035	ENSMUSG00000036860	Mrpl55	2810038N09Rik|L55mt|MRP-L55	mitochondrial ribosomal protein L55	protein-coding	0.055000	0.606965	
mm_70430.1	chr8	11555762	11555962	+	1	NA	NA	NA	100	NM_001302458	26356	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.105000	0.681592	
mm_66747.1	chr7	46712026	46712226	-	1	NA	NA	NA	-1475	NM_030233	78935	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.015000	0.512438	
mm_64399.1	chr7	142500197	142500397	+	1	NA	NA	NA	1461	NM_001347551	21957	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	0.005000	0.567164	-93(CTCCTTATAAAC,-,0.00),-91(CCTTATAAACGC,+,0.00)
mm_162891.1	chr10	110455818	110456018	-	1	NA	NA	NA	-144732	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA	0.195000	0.820896	
mm_98823.1	chr11	97362226	97362426	+	1	NA	NA	NA	-225	NM_138657	192157	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.150000	0.835821	-31(CCCTCTATGAGG,-,0.00)
mm_7412.1	chr1	119422105	119422305	-	1	NA	NA	NA	43	NM_008381	16324	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	0.100000	0.616915	
mm_35667.1	chr4	43562314	43562514	-	1	NA	NA	NA	169	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.085000	0.597015	-23(GCGTTTAAAAGG,-,0.00)
mm_110098.1	chr12	25241907	25242107	-	1	NA	NA	NA	112833	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.010000	0.432836	7(TCCTCTTTAAGG,-,0.00),9(CTCTTTAAGGAC,+,0.00)
mm_79291.1	chr9	51214392	51214592	+	1	NA	NA	NA	802	NM_011136	18985	Mm.897	NM_011136	ENSMUSG00000032053	Pou2af1	BOB.1|Bob-1|Bob1|OBF-1|OBF.1|OCA-B|OCAB	POU domain, class 2, associating factor 1	protein-coding	0.015000	0.373134	-26(GGCTATATAGAC,-,0.00)
mm_33420.1	chr4	129984795	129984995	+	1	NA	NA	NA	25	NM_001290714	230775	Mm.262241	NM_173071	ENSMUSG00000028782	Adgrb2	Bai2	adhesion G protein-coupled receptor B2	protein-coding	0.180000	0.825871	
mm_66249.1	chr7	35585446	35585646	-	1	NA	NA	NA	36	NM_145840	243923	Mm.222680	NM_145840	ENSMUSG00000056043	Rgs9bp	R9AP|Rgs9-1bp	regulator of G-protein signalling 9 binding protein	protein-coding	0.075000	0.641791	
mm_99607.1	chr11	104576951	104577151	+	1	NA	NA	NA	-14853	NR_130177	100415912	Mm.446786	NR_130177		Gm11665	Gm11664|OTTMUSG00000003182|OTTMUSG00000003183	predicted gene 11665	ncRNA	0.010000	0.572139	
mm_65846.1	chr7	29248363	29248563	-	1	NA	NA	NA	4	NM_028179	72275	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0.040000	0.616915	
mm_101302.1	chr11	22286980	22287180	-	1	NA	NA	NA	-285	NM_001252515	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0.095000	0.671642	
mm_10901.1	chr2	25288071	25288271	+	1	NA	NA	NA	26	NM_030055	78217	Mm.160057	NM_030055	ENSMUSG00000026963	Tmem210	4930571C24Rik	transmembrane protein 210	protein-coding	0.000000	0.611940	
mm_31882.1	chr4	82065766	82065966	+	1	NA	NA	NA	486	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	0.010000	0.507463	
mm_146879.1	chr18	25679377	25679577	-	1	NA	NA	NA	74506	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.135000	0.766169	
mm_125575.1	chr15	59374196	59374396	+	1	NA	NA	NA	98	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.110000	0.651741	
mm_74988.1	chr8	27156255	27156455	-	1	NA	NA	NA	13445	NR_045840	71082	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.045000	0.522388	
mm_24289.1	chr3	89245799	89245999	+	1	NA	NA	NA	-2	NM_183037	360213	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.060000	0.636816	
mm_154292.1	chr19	61140659	61140859	-	1	NA	NA	NA	81	NR_131956	414758	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0.030000	0.547264	
mm_145893.1	chr18	65587369	65587569	+	1	NA	NA	NA	7239	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.015000	0.552239	
mm_13806.1	chr2	119047044	119047244	+	1	NA	NA	NA	25	NM_029617	76464	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	0.080000	0.611940	
mm_36076.1	chr4	58206229	58206429	-	1	NA	NA	NA	267	NM_022814	64817	Mm.261024	NM_022814	ENSMUSG00000028369	Svep1	1110021D17Rik|4833413O10Rik|AA387071|D430029O09Rik|Polydom	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	protein-coding	0.070000	0.686567	
mm_85919.1	chr9	111119194	111119394	-	1	NA	NA	NA	1183	NM_001164838	71268	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.040000	0.437811	
mm_56412.1	chr6	97221656	97221856	-	1	NA	NA	NA	10964	NM_022992	65106	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	0.015000	0.527363	-29(GCCTTTATAAAA,-,0.00)
mm_60587.1	chr7	44482682	44482882	+	1	NA	NA	NA	-1735	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.527363	-12(CCCTTTCTGGGC,+,0.00)
mm_34798.1	chr4	154637455	154637655	+	1	NA	NA	NA	-682	NM_027504	70673	Mm.257785	NM_027504	ENSMUSG00000039410	Prdm16	5730557K01Rik|csp1|mel1	PR domain containing 16	protein-coding	0.130000	0.786070	
mm_23230.1	chr3	50415690	50415890	+	1	NA	NA	NA	27823	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.402985	
mm_17774.1	chr2	32847107	32847307	-	1	NA	NA	NA	25	NM_009295	20910	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0.190000	0.810945	
mm_172573.1	chr8	11312726	11312926	+	1	NA	NA	NA	0	NR_133670	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.130000	0.736318	
mm_111031.1	chr12	79172541	79172741	-	1	NA	NA	NA	-183	NM_016800	53612	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	0.085000	0.661692	
mm_76838.1	chr8	105283125	105283325	-	1	NA	NA	NA	6303	NM_001166394	74356	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0.070000	0.626866	
mm_69480.1	chr7	133776623	133776823	-	1	NA	NA	NA	80	NM_001286032	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.130000	0.721393	
mm_156257.1	chrX	136788383	136788583	+	1	NA	NA	NA	-8762	NM_010297	14657	Mm.215168	NM_010297	ENSMUSG00000018595	Glra4	-	glycine receptor, alpha 4 subunit	protein-coding	0.000000	0.462687	
mm_79035.1	chr9	46127135	46127335	+	1	NA	NA	NA	-101395	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.015000	0.388060	
mm_36375.1	chr4	76570249	76570449	-	1	NA	NA	NA	-1292063	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.000000	0.278607	
mm_15573.1	chr2	158666565	158666765	+	1	NA	NA	NA	-68	NM_153089	228852	Mm.150540	NM_153089	ENSMUSG00000037754	Ppp1r16b	ANKRD4|C130078N17Rik|TIMAP|Wdt4	protein phosphatase 1, regulatory (inhibitor) subunit 16B	protein-coding	0.015000	0.497512	49(CTCTAGATAAGG,-,0.00)
mm_139228.1	chr17	47730624	47730824	+	1	NA	NA	NA	3882	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.040000	0.611940	
mm_41174.1	chr5	88002481	88002681	+	1	NA	NA	NA	56	NM_011422	20599	Mm.261199	NM_011422	ENSMUSG00000029280	Smr3a	AA589601|MSG1|MSG3|Smr1|Smr3	submaxillary gland androgen regulated protein 3A	protein-coding	0.005000	0.422886	
mm_171420.1	chr4	13377994	13378194	+	1	NA	NA	NA	-365208	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.035000	0.547264	
mm_120964.1	chr14	77904303	77904503	+	1	NA	NA	NA	164	NM_029495	108670	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.040000	0.542289	
mm_104667.1	chr11	97657218	97657418	-	1	NA	NA	NA	-6094	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.000000	0.502488	
mm_112332.1	chr12	115912728	115912928	-	1	NA	NA	NA	-134896	NM_001004066	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0.000000	0.452736	
mm_82014.1	chr9	121719196	121719396	+	1	NA	NA	NA	115	NM_010918	18087	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0.140000	0.766169	
mm_26814.1	chr3	10254138	10254338	-	1	NA	NA	NA	-45662	NM_024406	11770	Mm.582	NM_024406	ENSMUSG00000062515	Fabp4	422/aP2|ALBP/Ap2|Ap2|Lbpl	fatty acid binding protein 4, adipocyte	protein-coding	0.005000	0.437811	
mm_114649.1	chr13	77135448	77135648	+	1	NA	NA	NA	12	NM_001145676	72371	Mm.81475	NM_028215	ENSMUSG00000071252	2210408I21Rik	-	RIKEN cDNA 2210408I21 gene	protein-coding	0.085000	0.577114	
mm_143777.1	chr17	81712810	81713010	-	1	NA	NA	NA	25477	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.278607	
mm_92026.1	chr10	62449648	62449848	-	1	NA	NA	NA	-55	NM_181423	338359	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	0.105000	0.666667	
mm_110756.1	chr12	70111166	70111366	-	1	NA	NA	NA	363	NR_104398	18080	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0.070000	0.686567	
mm_131601.1	chr16	19063213	19063413	+	1	NA	NA	NA	186563	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.005000	0.452736	
mm_1227.1	chr1	62758171	62758371	+	1	NA	NA	NA	36461	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.005000	0.393035	
mm_135300.1	chr16	38678313	38678513	-	1	NA	NA	NA	34622	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.010000	0.328358	
mm_42015.1	chr5	108132791	108132991	+	1	NA	NA	NA	-23	NM_028481	73254	Mm.441231	NM_028481	ENSMUSG00000056531	Ccdc18	1700021E15Rik|4932411G06Rik|NY-SAR-41	coiled-coil domain containing 18	protein-coding	0.125000	0.706468	
mm_72715.1	chr8	84997753	84997953	+	1	NA	NA	NA	7258	NM_001167991	170833	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	0.010000	0.552239	-54(TCCTTTAGAGCC,+,0.00)
mm_163269.1	chr11	115163264	115163464	+	1	NA	NA	NA	23	NM_012030	26941	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0.110000	0.691542	
mm_172373.1	chr7	126324872	126325072	-	1	NA	NA	NA	43073	NR_106025	102466797		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.015000	0.522388	
mm_152328.1	chr19	9954110	9954310	-	1	NA	NA	NA	-26390	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.005000	0.477612	
mm_145891.1	chr18	65582295	65582495	+	1	NA	NA	NA	2165	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.020000	0.502488	19(AGCCCTAAAAGA,-,0.00)
mm_64008.1	chr7	140203683	140203883	+	1	NA	NA	NA	-1015	NM_001011814	258055	Mm.377339	NM_001011814	ENSMUSG00000050366	Olfr524	MOR103-14P	olfactory receptor 524	protein-coding	0.010000	0.537313	
mm_45657.1	chr5	77114779	77114979	-	1	NA	NA	NA	244	NM_175606	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.050000	0.557214	-33(GGCTATTTAAGC,-,0.00)
mm_33226.1	chr4	126756464	126756664	+	1	NA	NA	NA	2794	NM_001035526	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.015000	0.437811	
mm_57232.1	chr6	123282718	123282918	-	1	NA	NA	NA	7053	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.005000	0.373134	
mm_131260.1	chr16	10791487	10791687	+	1	NA	NA	NA	518	NM_008933	19119	Mm.325769	NM_008933	ENSMUSG00000038015	Prm2	AI528784|Prm-2	protamine 2	protein-coding	0.010000	0.547264	
mm_127051.1	chr15	96699989	96700189	+	1	NA	NA	NA	-391	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.045000	0.542289	
mm_120960.1	chr14	77520088	77520288	+	1	NA	NA	NA	-13320	NR_033141	629678	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	0.010000	0.417910	
mm_52021.1	chr6	94680847	94681047	+	1	NA	NA	NA	19198	NM_008377	16206	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.010000	0.472637	
mm_172842.1	chr9	3258831	3259031	-	1	NA	NA	NA	-59118	NR_027988	114673	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0.015000	0.477612	12(CCCCAGAAAAGG,-,0.00)
mm_73430.1	chr8	106135779	106135979	+	1	NA	NA	NA	479	NR_040346	69771	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.065000	0.666667	
mm_43882.1	chr5	143817702	143817902	+	1	NA	NA	NA	-54060	NM_013557	15467	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	0.065000	0.616915	
mm_2454.1	chr1	101302320	101302520	+	1	NA	NA	NA	146652	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0.030000	0.487562	
mm_27107.1	chr3	30647735	30647935	-	1	NA	NA	NA	-17	NM_027941	71827	Mm.45373	NM_027941	ENSMUSG00000027702	Lrrc34	1700007J06Rik|SPATA34	leucine rich repeat containing 34	protein-coding	0.055000	0.592040	
mm_136485.1	chr16	96082335	96082535	-	1	NA	NA	NA	-7	NM_145125	93871	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0.195000	0.791045	
mm_16032.1	chr2	167642507	167642707	+	1	NA	NA	NA	-10602	NM_023230	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.010000	0.368159	
mm_137421.1	chr17	26202881	26203081	+	1	NA	NA	NA	19	NM_001081069	50782	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	0.080000	0.661692	
mm_134990.1	chr16	32144415	32144615	-	1	NA	NA	NA	20961	NM_146069	224109	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.045000	0.522388	
mm_170397.1	chr1	86358912	86359112	-	1	NA	NA	NA	443	NM_010880	17975	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	0.110000	0.666667	
mm_10886.1	chr2	25262460	25262660	+	1	NA	NA	NA	-38	NM_175286	97031	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0.070000	0.597015	
mm_127467.1	chr15	101272670	101272870	+	1	NA	NA	NA	5924	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.035000	0.537313	
mm_28633.1	chr3	95193637	95193837	-	1	NA	NA	NA	-23720	NR_108026	100504029	Mm.478537	NR_108026	ENSMUSG00000097167	Gm16740	-	predicted gene, 16740	ncRNA	0.000000	0.358209	12(GTTTTTATACAA,+,0.00)
mm_59262.1	chr7	24884569	24884769	+	1	NA	NA	NA	-45	NM_023133	20085	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	0.140000	0.736318	
mm_59103.1	chr7	19701219	19701419	+	1	NA	NA	NA	-2131	NM_009696	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.030000	0.417910	
mm_116007.1	chr13	24604692	24604892	-	1	NA	NA	NA	-25	NR_024599	76024	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347|OTTMUSG00000000601|OTTMUSG00000000602	X-linked lymphocyte-regulated 5 pseudogene	pseudo	0.050000	0.527363	
mm_62233.1	chr7	98563132	98563332	+	1	NA	NA	NA	69010	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.020000	0.557214	
mm_107191.1	chr12	25099731	25099931	+	1	NA	NA	NA	-3739	NM_010496	15902	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.040000	0.537313	-55(CCTTTTAGGAAC,+,0.00)
mm_112151.1	chr12	113260125	113260325	-	1	NA	NA	NA	74322	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.035000	0.477612	
mm_86753.1	chr10	19598291	19598491	+	1	NA	NA	NA	6442	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.025000	0.447761	-33(AAGCTTAAAAGC,-,0.00)
mm_157952.1	chrX	87238296	87238496	-	1	NA	NA	NA	877227	NM_001160403	331461	Mm.121680	NM_001160403	ENSMUSG00000052372	Il1rapl1	6330532G10Rik|C030039N24|IL1R8|IL1RAPL|MRX34|OPHN4|TIGIRR-2	interleukin 1 receptor accessory protein-like 1	protein-coding	0.050000	0.611940	
mm_114126.1	chr13	55210335	55210535	+	1	NA	NA	NA	653	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.095000	0.761194	
mm_6333.1	chr1	71627206	71627406	-	1	NA	NA	NA	25928	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.030000	0.512438	
mm_139107.1	chr17	47313924	47314124	+	1	NA	NA	NA	-54863	NM_001146212	64657	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	0.020000	0.437811	
mm_163849.1	chr14	19418135	19418335	+	1	NA	NA	NA	184352	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.358209	
mm_89253.1	chr10	87859139	87859339	+	1	NA	NA	NA	187	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.010000	0.402985	
mm_155906.1	chrX	101695737	101695937	+	1	NA	NA	NA	38310	NM_009910	12766	Mm.12876	NM_009910	ENSMUSG00000050232	Cxcr3	Cd183|Cmkar3	chemokine (C-X-C motif) receptor 3	protein-coding	0.095000	0.651741	-86(GGGCAGAAAAGG,-,0.00),-36(CCCTATAAAAGG,-,0.00)
mm_77811.1	chr9	3037924	3038124	+	1	NA	NA	NA	719	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.348259	
mm_95088.1	chr11	33529867	33530067	+	1	NA	NA	NA	-16221	NM_023146	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.020000	0.437811	-49(AGCTATTTAAAG,-,0.00),-47(CTATTTAAAGCC,+,0.00)
mm_63843.1	chr7	135651835	135652035	+	1	NA	NA	NA	36	NM_001316681	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.020000	0.597015	
mm_66077.1	chr7	30943927	30944127	-	1	NA	NA	NA	2	NM_032541	84506	Mm.439939	NM_032541	ENSMUSG00000050440	Hamp	Hamp1|Hepc|Hepc1	hepcidin antimicrobial peptide	protein-coding	0.010000	0.562189	-35(TCCCATAAAAAG,-,0.00),-33(CCATAAAAAGGA,+,0.00)
mm_10927.1	chr2	25431146	25431346	+	1	NA	NA	NA	2572	NM_007379	11305	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	0.020000	0.601990	
mm_6493.1	chr1	74194556	74194756	-	1	NA	NA	NA	-25	NM_178241	227288	Mm.337035	NM_178241	ENSMUSG00000048480	Cxcr1	Il8ra	chemokine (C-X-C motif) receptor 1	protein-coding	0.025000	0.542289	
mm_24783.1	chr3	95541515	95541715	+	1	NA	NA	NA	14829	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.000000	0.383085	
mm_145656.1	chr18	61130464	61130664	+	1	NA	NA	NA	13096	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.035000	0.611940	
mm_92142.1	chr10	67011146	67011346	-	1	NA	NA	NA	6171	NR_110511	102634101	Mm.445258	NR_110511		Gm31763	-	predicted gene, 31763	ncRNA	0.015000	0.522388	
mm_120157.1	chr14	60709252	60709452	+	1	NA	NA	NA	-23552	NM_001310594	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.015000	0.552239	
mm_104935.1	chr11	100096140	100096340	-	1	NA	NA	NA	-16	NM_016880	53617	Mm.37952	NM_016880	ENSMUSG00000048013	Krt35	AI662400|Ha5|Krt1-24|Krtha5	keratin 35	protein-coding	0.020000	0.507463	
mm_96067.1	chr11	59740168	59740368	+	1	NA	NA	NA	-114	NR_045476	69320	Mm.443242	NR_045476	ENSMUSG00000086330	1700007J10Rik	4930573L17Rik	RIKEN cDNA 1700007J10 gene	ncRNA	0.010000	0.557214	
mm_55230.1	chr6	52240563	52240763	-	1	NA	NA	NA	191	NM_001122950	15395	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0.050000	0.537313	60(CCTTTTCTGGGC,+,0.00)
mm_86215.1	chr9	120023466	120023666	-	1	NA	NA	NA	32	NM_011724	22437	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.035000	0.592040	
mm_22283.1	chr2	180104349	180104549	-	1	NA	NA	NA	-42	NM_133849	99296	Mm.285360	NM_133849	ENSMUSG00000039059	Hrh3	AW049250|H3R|HH3R	histamine receptor H3	protein-coding	0.145000	0.771144	
mm_16318.1	chr2	174304267	174304467	+	1	NA	NA	NA	6508	NM_001310085	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.000000	0.402985	
mm_78472.1	chr9	32652406	32652606	+	1	NA	NA	NA	-43536	NM_011808	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.010000	0.477612	
mm_5126.1	chr1	9631061	9631261	-	1	NA	NA	NA	-69	NR_015470	72481	Mm.279818	NR_015470	ENSMUSG00000079671	2610203C22Rik	2310007M24Rik	RIKEN cDNA 2610203C22 gene	ncRNA	0.015000	0.502488	
mm_4412.1	chr1	172496183	172496383	+	1	NA	NA	NA	-3963	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.050000	0.626866	
mm_17804.1	chr2	33371342	33371542	-	1	NA	NA	NA	52	NM_001290570	241308	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0.115000	0.711443	
mm_159769.1	chr5	100039258	100039458	-	1	NA	NA	NA	-136	NM_016690	50926	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	0.130000	0.731343	
mm_146287.1	chr18	78476767	78476967	+	1	NA	NA	NA	120083	NM_207651	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.005000	0.378109	
mm_151947.1	chr19	5800973	5801173	-	1	NA	NA	NA	1599	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.050000	0.587065	
mm_159874.1	chr5	149528570	149528770	+	1	NA	NA	NA	-9	NM_029440	381693	Mm.136919	NM_029440	ENSMUSG00000029658	Wdr95	4930434E21Rik	WD40 repeat domain 95	protein-coding	0.025000	0.527363	
mm_127040.1	chr15	96640963	96641163	+	1	NA	NA	NA	899	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.060000	0.497512	
mm_24920.1	chr3	96402020	96402220	+	1	NA	NA	NA	12713	NR_001579	21748		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	0.105000	0.636816	
mm_117549.1	chr13	84055822	84056022	-	1	NA	NA	NA	8852	NR_131220	553095	Mm.39702	NR_131220	ENSMUSG00000098087	Gm17750	-	predicted gene, 17750	ncRNA	0.005000	0.293532	-33(TGGTTTTTAAGC,-,0.00)
mm_133482.1	chr16	90219574	90219774	+	1	NA	NA	NA	-1068	NM_011434	20655	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.020000	0.542289	
mm_115727.1	chr13	17215431	17215631	-	1	NA	NA	NA	479234	NM_138654	192136	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	0.000000	0.353234	70(GTTTATAAAAAG,-,0.00)
mm_134945.1	chr16	31275186	31275386	-	1	NA	NA	NA	-9	NM_025800	66849	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	0.130000	0.756219	
mm_81859.1	chr9	118776406	118776606	+	1	NA	NA	NA	64814	NM_001113514	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.030000	0.412935	
mm_162159.1	chrX	92489904	92490104	+	1	NA	NA	NA	55	NM_001034103	546347	Mm.380183	NM_001034103	ENSMUSG00000071726	Gm5941	EG546347	predicted gene 5941	protein-coding	0.010000	0.502488	
mm_52229.1	chr6	103574501	103574701	+	1	NA	NA	NA	63725	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.015000	0.462687	
mm_19561.1	chr2	98667237	98667437	-	1	NA	NA	NA	1199680	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.015000	0.373134	
mm_173355.1	chrY	90814663	90814863	+	1	NA	NA	NA	24643	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.015000	0.467662	
mm_23766.1	chr3	73397457	73397657	+	1	NA	NA	NA	84094	NR_040547	74693	Mm.292227	NR_040547	ENSMUSG00000102362	4930509J09Rik	-	RIKEN cDNA 4930509J09 gene	ncRNA	0.000000	0.298507	-58(GCCCTTAAAAAA,-,0.00),-56(CCTTAAAAAAAC,+,0.00)
mm_92097.1	chr10	62887367	62887567	-	1	NA	NA	NA	-7453	NM_001253857	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.055000	0.616915	
mm_86803.1	chr10	20312866	20313066	+	1	NA	NA	NA	497	NM_001025393	72567	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0.105000	0.666667	
mm_38932.1	chr4	150192479	150192679	-	1	NA	NA	NA	8556	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.020000	0.497512	
mm_102175.1	chr11	53980269	53980469	-	1	NA	NA	NA	-342	NM_019723	56517	Mm.154284	NM_019723	ENSMUSG00000063652	Slc22a21	Octn3|Slc22a9	solute carrier family 22 (organic cation transporter), member 21	protein-coding	0.075000	0.666667	
mm_13230.1	chr2	97526038	97526238	+	1	NA	NA	NA	58481	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.000000	0.373134	60(GACTTTAAAAGG,-,0.00),61(ACTTTAAAAGGC,+,0.00)
mm_157034.1	chrX	7947670	7947870	-	1	NA	NA	NA	119	NM_001130416	15185	Mm.29854	NM_010413	ENSMUSG00000031161	Hdac6	Hd6|Hdac5|Sfc6|mHDA2	histone deacetylase 6	protein-coding	0.075000	0.646766	68(GTCTTTAAAGGT,-,0.00),69(TCTTTAAAGGTG,+,0.00)
mm_51315.1	chr6	72314386	72314586	+	1	NA	NA	NA	9876	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.015000	0.497512	
mm_118122.1	chr13	104178075	104178275	-	1	NA	NA	NA	291	NM_025879	66975	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	0.045000	0.542289	51(GGCGCTAAAAGG,-,0.00)
mm_144613.1	chr18	32816820	32817020	+	1	NA	NA	NA	60	NR_033206	53603	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	0.020000	0.507463	
mm_44480.1	chr5	23434233	23434433	-	1	NA	NA	NA	20	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.145000	0.756219	
mm_9766.1	chr1	180989757	180989957	-	1	NA	NA	NA	27712	NM_010145	13849	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.025000	0.552239	
mm_140257.1	chr17	84511773	84511973	+	1	NA	NA	NA	-22	NM_177606	213556	Mm.215159	NM_177606	ENSMUSG00000040852	Plekhh2	AI256725|E030001K05|mKIAA2028	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	protein-coding	0.130000	0.711443	
mm_94483.1	chr11	6588880	6589080	+	1	NA	NA	NA	17074	NM_001081652	192950	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	0.010000	0.502488	
mm_87146.1	chr10	34484748	34484948	+	1	NA	NA	NA	1448	NM_010237	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.005000	0.323383	
mm_104199.1	chr11	87984178	87984378	-	1	NA	NA	NA	2307	NM_001168472	68097	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	0.005000	0.422886	
mm_151298.1	chr19	55514150	55514350	+	1	NA	NA	NA	187954	NR_045318	77594	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.015000	0.457711	
mm_103842.1	chr11	83044916	83045116	-	1	NA	NA	NA	-4483	NR_073524	237887	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	pseudo	0.000000	0.517413	
mm_50634.1	chr6	51326815	51327015	+	1	NA	NA	NA	-52795	NR_110455	625167	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	0.005000	0.442786	-32(TCCTATATAAGT,-,0.00),54(AGGTATTTAAGC,-,0.00)
mm_56702.1	chr6	114969835	114970035	-	1	NA	NA	NA	-48183	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.120000	0.676617	
mm_90681.1	chr10	128909771	128909971	+	1	NA	NA	NA	5	NM_007653	12512	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.105000	0.761194	
mm_142826.1	chr17	51766661	51766861	-	1	NA	NA	NA	45293	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.010000	0.328358	-13(AGCTTTATAGGC,-,0.00)
mm_13902.1	chr2	120476818	120477018	+	1	NA	NA	NA	9	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.025000	0.592040	-35(AGCTATATAGGC,-,0.00)
mm_152310.1	chr19	9891021	9891221	-	1	NA	NA	NA	8412	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.005000	0.288557	
mm_77451.1	chr8	121829411	121829611	-	1	NA	NA	NA	58	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.105000	0.616915	
mm_146232.1	chr18	77137227	77137427	+	1	NA	NA	NA	-48520	NM_153124	225742	Mm.365178	NM_013666	ENSMUSG00000025425	St8sia5	ST8SiaV|Siat8e	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding	0.005000	0.253731	
mm_125107.1	chr15	27796711	27796911	+	1	NA	NA	NA	-115269	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.015000	0.422886	
mm_63727.1	chr7	130865707	130865907	+	1	NA	NA	NA	83	NM_001346515	101476	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.155000	0.716418	
mm_129347.1	chr15	77905291	77905491	-	1	NA	NA	NA	23603	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.050000	0.616915	
mm_54823.1	chr6	42358292	42358492	-	1	NA	NA	NA	8564	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.015000	0.447761	
mm_101845.1	chr11	48816849	48817049	-	1	NA	NA	NA	442	NM_145377	211007	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0.065000	0.676617	-5(GGGTTTATGAGC,-,0.00)
mm_19548.1	chr2	98663959	98664159	-	1	NA	NA	NA	1196402	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.025000	0.398010	
mm_27200.1	chr3	35666097	35666297	-	1	NA	NA	NA	-34	NR_040748	625963	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	0.005000	0.407960	75(GTCTATTAAAAA,-,0.00)
mm_115388.1	chr13	113209873	113210073	+	1	NA	NA	NA	314	NM_023612	71690	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.045000	0.592040	
mm_3383.1	chr1	139501585	139501785	+	1	NA	NA	NA	-22	NM_031164	14060	Mm.30105	NM_031164	ENSMUSG00000026368	F13b	Cf-13b|Cf13b	coagulation factor XIII, beta subunit	protein-coding	0.010000	0.323383	
mm_6553.1	chr1	75136495	75136695	-	1	NA	NA	NA	-2705	NM_194333	22626	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.025000	0.631841	
mm_143195.1	chr17	62627833	62628033	-	1	NA	NA	NA	253384	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.020000	0.477612	
mm_171087.1	chr3	124385604	124385804	+	1	NA	NA	NA	40324	NM_027939	71824	Mm.331353	NM_027939	ENSMUSG00000027973	1700006A11Rik	-	RIKEN cDNA 1700006A11 gene	protein-coding	0.055000	0.557214	
mm_74626.1	chr8	13167756	13167956	-	1	NA	NA	NA	8695	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.025000	0.457711	
mm_89938.1	chr10	111270475	111270675	+	1	NA	NA	NA	-28104	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.035000	0.522388	
mm_140911.1	chr17	24168658	24168858	-	1	NA	NA	NA	637	NR_037854	100039636	Mm.30155	NR_037854		Atp6v0c-ps2	Atp6l-ps2|Gm15487	ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2	pseudo	0.045000	0.641791	12(GCTTTTATGGCG,+,0.00)
mm_111554.1	chr12	101040031	101040231	-	1	NA	NA	NA	-11148	NM_026681	68339	Mm.156217	NM_026681	ENSMUSG00000021182	Ccdc88c	0610010D24Rik|AV000935|AW324073|Daple|mKIAA1509	coiled-coil domain containing 88C	protein-coding	0.000000	0.338308	
mm_77985.1	chr9	7873057	7873257	+	1	NA	NA	NA	13	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.030000	0.542289	51(CGCCTTAAGAGG,-,0.00),52(GCCTTAAGAGGC,+,0.00)
mm_155594.1	chrX	81094482	81094682	+	1	NA	NA	NA	23938	NM_138751	192216	Mm.490421	NM_138751	ENSMUSG00000025666	Tmem47	3010015F07Rik|AI115536|BCMP1|Tm4sf10	transmembrane protein 47	protein-coding	0.005000	0.393035	
mm_11304.1	chr2	30237614	30237814	+	1	NA	NA	NA	-55	NM_177725	241296	Mm.389232	NM_177725	ENSMUSG00000007476	Lrrc8a	Lrrc8|mKIAA1437	leucine rich repeat containing 8A	protein-coding	0.120000	0.736318	
mm_48253.1	chr5	137827715	137827915	-	1	NA	NA	NA	8463	NM_153510	231805	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.015000	0.467662	
mm_163466.1	chr12	102282988	102283188	-	1	NA	NA	NA	14	NM_177620	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.115000	0.736318	
mm_149909.1	chr19	25672314	25672514	+	1	NA	NA	NA	3	NM_145831	226049	Mm.275572	NM_145831	ENSMUSG00000048138	Dmrt2	Terra	doublesex and mab-3 related transcription factor 2	protein-coding	0.060000	0.626866	
mm_70965.1	chr8	27023702	27023902	+	1	NA	NA	NA	3	NM_153592	244373	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.100000	0.592040	
mm_36597.1	chr4	88722409	88722609	-	1	NA	NA	NA	-1	NM_172871	242521	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|ENSMUSG00000070923|mKIAA1354	kelch-like 9	protein-coding	0.100000	0.731343	
mm_161126.1	chr12	111406736	111406936	+	1	NA	NA	NA	27	NM_001101503	380787	Mm.125602	NM_001101503	ENSMUSG00000087075	A230065H16Rik	Gm898|Lbh2	RIKEN cDNA A230065H16 gene	protein-coding	0.090000	0.706468	
mm_142359.1	chr17	43667082	43667282	-	1	NA	NA	NA	-167	NM_028711	74011	Mm.288697	NM_028711	ENSMUSG00000023912	Slc25a27	3632410G24Rik|9430092A03Rik|D530043E16Rik|Ucp4	solute carrier family 25, member 27	protein-coding	0.060000	0.587065	
mm_93575.1	chr10	116582031	116582231	-	1	NA	NA	NA	-620	NM_001037846	72068	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.085000	0.686567	
mm_26900.1	chr3	19265003	19265203	-	1	NA	NA	NA	-95	NM_008802	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.010000	0.447761	
mm_144994.1	chr18	38296732	38296932	+	1	NA	NA	NA	27	NM_001164621	56736	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	0.120000	0.746269	
mm_56568.1	chr6	102553798	102553998	-	1	NA	NA	NA	-89231	NM_008779	18488	Mm.435479	NM_008779	ENSMUSG00000030075	Cntn3	Pang	contactin 3	protein-coding	0.010000	0.283582	
mm_31790.1	chr4	63728918	63729118	+	1	NA	NA	NA	16095	NM_177371	326623	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0.005000	0.402985	-44(CCTTTTAGGGAA,+,0.00)
mm_121712.1	chr14	16172401	16172601	-	1	NA	NA	NA	-76813	NM_021504	59007	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	0.005000	0.492537	
mm_23438.1	chr3	59431137	59431337	+	1	NA	NA	NA	-86981	NM_001162884	242050	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.015000	0.368159	
mm_342.1	chr1	30874924	30875124	+	1	NA	NA	NA	-11768	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding	0.015000	0.417910	
mm_148286.1	chr18	82554591	82554791	-	1	NA	NA	NA	183	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.050000	0.601990	-98(GCATTTAAACCC,+,0.00)
mm_40594.1	chr5	64230324	64230524	+	1	NA	NA	NA	67	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.150000	0.771144	
mm_149737.1	chr19	22321545	22321745	+	1	NA	NA	NA	-126563	NM_177341	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.010000	0.398010	
mm_148307.1	chr18	83488734	83488934	-	1	NA	NA	NA	-162950	NR_045361	70960	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0.040000	0.512438	
mm_141452.1	chr17	30389269	30389469	-	1	NA	NA	NA	6811	NR_030688	623169	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0.000000	0.398010	
mm_139408.1	chr17	52602163	52602363	+	1	NA	NA	NA	-446	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.040000	0.646766	
mm_167289.1	chr8	44935334	44935534	+	1	NA	NA	NA	-14774	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.055000	0.601990	
mm_166687.1	chr6	103511832	103512032	+	1	NA	NA	NA	1056	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.025000	0.527363	
mm_95095.1	chr11	34009319	34009519	+	1	NA	NA	NA	-16226	NM_001190886	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.020000	0.552239	-16(GACTTGTAAAGG,-,0.00)
mm_5653.1	chr1	40580558	40580758	-	1	NA	NA	NA	431	NM_177084	110895	Mm.108602	NM_177084	ENSMUSG00000026065	Slc9a4	AW990558|D730009J23Rik|NHE4	solute carrier family 9 (sodium/hydrogen exchanger), member 4	protein-coding	0.035000	0.482587	
mm_82553.1	chr9	20976595	20976795	-	1	NA	NA	NA	98	NM_010333	14739	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0.060000	0.696517	
mm_71897.1	chr8	70001314	70001514	+	1	NA	NA	NA	-5030	NM_145596	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.035000	0.592040	-71(GCCCATATAGGG,-,0.00)
mm_165168.1	chr2	26204546	26204746	-	1	NA	NA	NA	1929	NM_001039653	16871	Mm.386765	NM_010711	ENSMUSG00000026934	Lhx3	Lim3|P-LIM|mLIM3|mLim-3	LIM homeobox protein 3	protein-coding	0.010000	0.427861	
mm_15698.1	chr2	163721142	163721342	+	1	NA	NA	NA	27205	NM_011106	18769	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.060000	0.626866	
mm_78746.1	chr9	42138717	42138917	+	1	NA	NA	NA	-14528	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.005000	0.402985	-5(CCTTTAAGACAA,+,0.00)
mm_115647.1	chr13	12291689	12291889	-	1	NA	NA	NA	-33676	NM_001081128	238505	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.050000	0.582090	
mm_154005.1	chr19	53038490	53038690	-	1	NA	NA	NA	64	NM_133216	170750	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	0.100000	0.711443	
mm_31412.1	chr4	48048179	48048379	+	1	NA	NA	NA	-2967	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.065000	0.646766	
mm_136909.1	chr17	13016574	13016774	+	1	NA	NA	NA	8835	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.020000	0.378109	
mm_4211.1	chr1	171270281	171270481	+	1	NA	NA	NA	53	NM_020579	57370	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	0.085000	0.696517	
mm_32253.1	chr4	102570432	102570632	+	1	NA	NA	NA	472	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.035000	0.577114	
mm_29755.1	chr3	127161828	127162028	-	1	NA	NA	NA	623	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.030000	0.527363	
mm_122189.1	chr14	31641139	31641339	-	1	NA	NA	NA	182	NM_025295	26363	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0.060000	0.636816	
mm_16311.1	chr2	174298635	174298835	+	1	NA	NA	NA	876	NM_001310085	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.100000	0.651741	
mm_37746.1	chr4	129614171	129614371	-	1	NA	NA	NA	-14	NM_001195730	100504491	Mm.482597	NM_001195730	ENSMUSG00000078552	Dcdc2b	Gm12964|Gm1366|OTTMUSG00000009523	doublecortin domain containing 2b	protein-coding	0.015000	0.557214	
mm_95192.1	chr11	42939532	42939732	+	1	NA	NA	NA	-210245	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding	0.020000	0.482587	
mm_133010.1	chr16	56075346	56075546	+	1	NA	NA	NA	-34	NM_001304503	66315	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0.060000	0.666667	
mm_116208.1	chr13	32776371	32776571	-	1	NA	NA	NA	5308	NM_001166030	238564	Mm.60041	NM_001166030	ENSMUSG00000044951	Mylk4	EG238564	myosin light chain kinase family, member 4	protein-coding	0.040000	0.502488	-35(TCCTTTTAAAGA,-,0.00),-34(CCTTTTAAAGAA,+,0.00)
mm_85897.1	chr9	111055619	111055819	-	1	NA	NA	NA	1525	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.030000	0.492537	
mm_34193.1	chr4	140702016	140702216	+	1	NA	NA	NA	643	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.150000	0.800995	
mm_23377.1	chr3	55537081	55537281	+	1	NA	NA	NA	75423	NM_001195540	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.015000	0.452736	
mm_61735.1	chr7	82173703	82173903	+	1	NA	NA	NA	-86105	NM_001277955	20408	Mm.736	NM_017400	ENSMUSG00000030638	Sh3gl3	EEN-B2|SH3P13|Sh3d2c|Sh3d2c2	SH3-domain GRB2-like 3	protein-coding	0.010000	0.547264	
mm_137609.1	chr17	28236847	28237047	+	1	NA	NA	NA	4193	NM_011145	19015	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.020000	0.522388	
mm_89218.1	chr10	86778985	86779185	+	1	NA	NA	NA	80	NM_175331	103466	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.135000	0.766169	
mm_81145.1	chr9	106877838	106878038	+	1	NA	NA	NA	9062	NM_175402	109095	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	0.020000	0.457711	
mm_21734.1	chr2	164745828	164746028	-	1	NA	NA	NA	-87	NM_133763	76233	Mm.440009	NM_133763	ENSMUSG00000017299	Dnttip1	6430706C13Rik	deoxynucleotidyltransferase, terminal, interacting protein 1	protein-coding	0.130000	0.696517	
mm_66560.1	chr7	45238986	45239186	-	1	NA	NA	NA	29	NM_001290802	12493	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0.025000	0.582090	
mm_166623.1	chr6	72544237	72544437	-	1	NA	NA	NA	-54	NM_007599	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.025000	0.587065	
mm_86239.1	chr9	120866445	120866645	-	1	NA	NA	NA	48705	NR_040742	76402	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0.010000	0.532338	
mm_16956.1	chr2	17390827	17391027	-	1	NA	NA	NA	-172587	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	0.015000	0.402985	
mm_6879.1	chr1	84363702	84363902	-	1	NA	NA	NA	-79157	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.005000	0.482587	
mm_21466.1	chr2	160950568	160950768	-	1	NA	NA	NA	-38329	NM_182840	280635	Mm.330747	NM_182840	ENSMUSG00000050700	Emilin3	1110013O17Rik|EMILIN-3|EMILIN-5|EMILIN-T|Emilin5	elastin microfibril interfacer 3	protein-coding	0.010000	0.432836	53(GCCTTTAAACTC,+,0.00)
mm_80085.1	chr9	70207281	70207481	+	1	NA	NA	NA	31	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.035000	0.527363	-63(CCATTTATGGAC,+,0.00)
mm_19423.1	chr2	91931610	91931810	-	1	NA	NA	NA	-8	NM_001012335	17242	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.070000	0.696517	
mm_143228.1	chr17	63333787	63333987	-	1	NA	NA	NA	-20914	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.005000	0.313433	
mm_161248.1	chr13	100452786	100452986	-	1	NA	NA	NA	-22	NM_008670	17940	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.025000	0.457711	-89(ACCTTTAAGAGG,-,0.00),-88(CCTTTAAGAGGC,+,0.00)
mm_39411.1	chr5	14668969	14669169	+	1	NA	NA	NA	154151	NM_001110796	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.015000	0.477612	
mm_32091.1	chr4	98437234	98437434	+	1	NA	NA	NA	41508	NM_172696	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.025000	0.472637	
mm_85426.1	chr9	103499196	103499396	-	1	NA	NA	NA	-18968	NM_001002896	107993	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding	0.020000	0.651741	
mm_99944.1	chr11	111073628	111073828	+	1	NA	NA	NA	7564	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.005000	0.383085	
mm_157358.1	chrX	37085143	37085343	-	1	NA	NA	NA	-21	NM_026055	67248	Mm.30478	NM_026055	ENSMUSG00000079641	Rpl39	2810465O16Rik	ribosomal protein L39	protein-coding	0.090000	0.601990	
mm_150595.1	chr19	40679582	40679782	+	1	NA	NA	NA	19912	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.000000	0.412935	
mm_73991.1	chr8	120672647	120672847	+	1	NA	NA	NA	4427	NM_001293559	12857	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit IV isoform 1	protein-coding	0.050000	0.567164	
mm_152459.1	chr19	10871832	10872032	-	1	NA	NA	NA	-2153	NM_133804	98170	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.020000	0.597015	
mm_113893.1	chr13	49193643	49193843	+	1	NA	NA	NA	6196	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.055000	0.597015	
mm_48599.1	chr5	144209433	144209633	-	1	NA	NA	NA	14045	NM_027410	70381	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	0.020000	0.442786	
mm_97651.1	chr11	79504098	79504298	+	1	NA	NA	NA	-116	NM_019409	18377	Mm.93335	NM_019409	ENSMUSG00000049612	Omg	-	oligodendrocyte myelin glycoprotein	protein-coding	0.010000	0.343284	
mm_39908.1	chr5	31297469	31297669	+	1	NA	NA	NA	-12	NM_144909	231103	Mm.100043	NM_144909	ENSMUSG00000059434	Gckr	GKRP	glucokinase regulatory protein	protein-coding	0.020000	0.547264	
mm_37756.1	chr4	129647405	129647605	-	1	NA	NA	NA	-6440	NM_001199695	109658	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	0.005000	0.427861	
mm_148774.1	chr19	6106028	6106228	+	1	NA	NA	NA	330	NM_001009546	381204	Mm.359041	NM_001009546	ENSMUSG00000054999	Naaladl1	Gm964|Naaladasel	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding	0.030000	0.601990	
mm_50137.1	chr6	41542972	41543172	+	1	NA	NA	NA	21296	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.000000	0.512438	
mm_32400.1	chr4	106867113	106867313	+	1	NA	NA	NA	-44257	NM_198438	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.015000	0.572139	
mm_161788.1	chr17	46024950	46025150	-	1	NA	NA	NA	113	NM_001110267	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.035000	0.552239	
mm_39293.1	chr5	5419963	5420163	+	1	NA	NA	NA	-39812	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.025000	0.482587	-85(GTTTTTAAAAGC,+,0.00),-85(GTTTTTAAAAGC,-,0.00),-34(GGCTTTAAAAGC,-,0.00),-33(GCTTTAAAAGCT,+,0.00)
mm_146575.1	chr18	7273483	7273683	-	1	NA	NA	NA	24318	NM_001081393	74934	Mm.107918	NM_001081393	ENSMUSG00000061802	Armc4	4930463I21Rik|b2b227.1Clo|b2b643Clo	armadillo repeat containing 4	protein-coding	0.005000	0.442786	
mm_114913.1	chr13	94976365	94976565	+	1	NA	NA	NA	121	NM_172590	218460	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.150000	0.761194	
mm_170625.1	chr1	9726871	9727071	+	1	NA	NA	NA	-20677	NR_040462	73331	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	0.005000	0.422886	77(CTTTATTAAAGG,-,0.00)
mm_111501.1	chr12	99412504	99412704	-	1	NA	NA	NA	37470	NM_183186	71375	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.010000	0.502488	
mm_46270.1	chr5	99978754	99978954	-	1	NA	NA	NA	84	NM_001077266	11991	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.120000	0.671642	-61(CGCCATTAAAGC,-,0.00)
mm_19865.1	chr2	114013529	114013729	-	1	NA	NA	NA	-10	NM_010290	14617	Mm.389394	NM_010290	ENSMUSG00000068615	Gjd2	Gja9|connexin36|cx36	gap junction protein, delta 2	protein-coding	0.150000	0.746269	
mm_155453.1	chrX	73495519	73495719	+	1	NA	NA	NA	-7467	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.010000	0.532338	
mm_169315.1	chr14	10608926	10609126	+	1	NA	NA	NA	-129527	NR_131139	547334	Mm.434606	NR_131139	ENSMUSG00000089833	Fhitos	Gm16542	fragile histidine triad gene, opposite strand	ncRNA	0.020000	0.527363	
mm_122803.1	chr14	54554289	54554489	-	1	NA	NA	NA	-28	NM_145462	219072	Mm.202152	NM_145462	ENSMUSG00000022177	Haus4	9430093H08Rik|AU016300|D14Ertd500e	HAUS augmin-like complex, subunit 4	protein-coding	0.105000	0.646766	
mm_99654.1	chr11	105655439	105655639	+	1	NA	NA	NA	65553	NM_181071	77097	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.015000	0.517413	
mm_135009.1	chr16	32402826	32403026	-	1	NA	NA	NA	2420	NM_001160402	277203	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0.005000	0.492537	-29(TGCCATTTAAGG,-,0.00),-27(CCATTTAAGGGC,+,0.00)
mm_135028.1	chr16	32797275	32797475	-	1	NA	NA	NA	60	NM_146071	224116	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	0.030000	0.651741	
mm_50396.1	chr6	48718529	48718729	+	1	NA	NA	NA	8	NM_146167	231932	Mm.30479	NM_146167	ENSMUSG00000043931	Gimap7	IAN7|Ian3	GTPase, IMAP family member 7	protein-coding	0.005000	0.517413	
mm_71368.1	chr8	45748857	45749057	+	1	NA	NA	NA	70340	NR_045739	319940	Mm.441720	NR_045739	ENSMUSG00000085440	Sorbs2os	D330022K07Rik	sorbin and SH3 domain containing 2, opposite strand	ncRNA	0.005000	0.338308	
mm_25876.1	chr3	130201248	130201448	+	1	NA	NA	NA	20503	NM_001244952	77018	Mm.91728	NM_029838	ENSMUSG00000058897	Col25a1	2700062B08Rik|CLAC-P	collagen, type XXV, alpha 1	protein-coding	0.000000	0.343284	
mm_27061.1	chr3	27695778	27695978	-	1	NA	NA	NA	14561	NM_173182	72007	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.010000	0.482587	
mm_173132.1	chrX	19347035	19347235	+	1	NA	NA	NA	-200164	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.005000	0.417910	-35(ATTTATAAAAGG,-,0.00)
mm_63803.1	chr7	133005907	133006107	+	1	NA	NA	NA	9240	NM_001170744	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.025000	0.547264	73(GCCTTTAAAAAC,-,0.00),74(CCTTTAAAAACC,+,0.00)
mm_59807.1	chr7	29155649	29155849	+	1	NA	NA	NA	461	NM_001146023	73833	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	0.115000	0.716418	
mm_1512.1	chr1	72536609	72536809	+	1	NA	NA	NA	-145	NM_001045533	381270	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	0.060000	0.676617	
mm_28595.1	chr3	94472778	94472978	-	1	NA	NA	NA	713	NM_025506	66353	Mm.46405	NM_025506	ENSMUSG00000028139	Riiad1	2310007A19Rik|Ncrna00166	regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1	protein-coding	0.085000	0.606965	
mm_123141.1	chr14	56694001	56694201	-	1	NA	NA	NA	6899	NR_046209	100503823	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	0.045000	0.502488	
mm_158897.1	chr1	24030315	24030515	-	1	NA	NA	NA	-24775	NM_026503	68002	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	0.005000	0.398010	62(ATCTCTAAAAGG,-,0.00)
mm_157705.1	chrX	62670172	62670372	-	1	NA	NA	NA	-143261	NR_045442	75545	Mm.391270	NR_045442	ENSMUSG00000085757	1700019B21Rik	-	RIKEN cDNA 1700019B21 gene	ncRNA	0.000000	0.447761	
mm_139995.1	chr17	72938246	72938446	+	1	NA	NA	NA	20041	NM_029999	77889	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.015000	0.547264	
mm_27563.1	chr3	58577299	58577499	-	1	NA	NA	NA	741	NM_001040396	69227	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	0.030000	0.398010	
mm_83184.1	chr9	40984402	40984602	-	1	NA	NA	NA	20126	NM_001281954	54698	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	0.010000	0.532338	
mm_142510.1	chr17	46160314	46160514	-	1	NA	NA	NA	-618	NM_019581	56055	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.020000	0.512438	
mm_129378.1	chr15	78173734	78173934	-	1	NA	NA	NA	274	NM_025931	67042	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	0.040000	0.597015	
mm_19928.1	chr2	116064641	116064841	-	1	NA	NA	NA	-122	NM_001159570	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.020000	0.462687	
mm_136552.1	chr17	3084137	3084337	+	1	NA	NA	NA	-54	NR_003519	328734	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.045000	0.577114	
mm_108726.1	chr12	87264560	87264760	+	1	NA	NA	NA	-416	NM_134044	104799	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	0.005000	0.328358	
mm_121657.1	chr14	11981129	11981329	-	1	NA	NA	NA	-208714	NM_001347593	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.010000	0.452736	65(GACCCTAAAGGC,-,0.00)
mm_108522.1	chr12	84053345	84053545	+	1	NA	NA	NA	1294	NM_134246	171281	Mm.202331	NM_134246	ENSMUSG00000021228	Acot3	AW108394|PTE-Ia|Pte2a	acyl-CoA thioesterase 3	protein-coding	0.030000	0.547264	-33(AGGCCTAAAAGC,-,0.00)
mm_108286.1	chr12	79135893	79136093	+	1	NA	NA	NA	5205	NM_009705	11847	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.000000	0.378109	
mm_59428.1	chr7	27129614	27129814	+	1	NA	NA	NA	9759	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.020000	0.497512	
mm_100577.1	chr11	120767003	120767203	+	1	NA	NA	NA	17101	NM_009053	19719	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.020000	0.587065	
mm_101315.1	chr11	22837074	22837274	-	1	NA	NA	NA	22561	NM_016888	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.015000	0.447761	
mm_135667.1	chr16	52407664	52407864	-	1	NA	NA	NA	45317	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.020000	0.437811	
mm_122875.1	chr14	54925771	54925971	-	1	NA	NA	NA	917	NM_010112	13644	Mm.236438	NM_010112	ENSMUSG00000022203	Efs	-	embryonal Fyn-associated substrate	protein-coding	0.050000	0.651741	
mm_37630.1	chr4	127354114	127354314	-	1	NA	NA	NA	-133	NM_008127	14621	Mm.56906	NM_008127	ENSMUSG00000046623	Gjb4	Cnx30.3|Cx30.3|Gjb-4	gap junction protein, beta 4	protein-coding	0.005000	0.601990	
mm_64060.1	chr7	140856249	140856449	+	1	NA	NA	NA	34	NM_018742	54399	Mm.155696	NM_018742	ENSMUSG00000025484	Bet1l	2610021K23Rik|Gs15	Bet1 golgi vesicular membrane trafficking protein like	protein-coding	0.065000	0.572139	
mm_26786.1	chr3	9610007	9610207	-	1	NA	NA	NA	-22	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.120000	0.691542	
mm_154353.1	chrM	5908	6108	+	1	NA	NA	NA	NA	NA									0.015000	0.432836	
mm_30445.1	chr3	153720951	153721151	-	1	NA	NA	NA	4082	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.015000	0.527363	
mm_74368.1	chr8	128418672	128418872	+	1	NA	NA	NA	59531	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.020000	0.502488	
mm_76022.1	chr8	75084960	75085160	-	1	NA	NA	NA	-8558	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.020000	0.472637	
mm_47135.1	chr5	120503510	120503710	-	1	NA	NA	NA	13	NM_023625	71772	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0.110000	0.751244	
mm_141735.1	chr17	34120880	34121080	-	1	NA	NA	NA	767	NM_010238	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.090000	0.696517	
mm_142736.1	chr17	48388055	48388255	-	1	NA	NA	NA	12425	NM_001347402	18044	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	0.000000	0.552239	
mm_88332.1	chr10	75571470	75571670	+	1	NA	NA	NA	-1925	NM_008116	14598	Mm.4559	NM_008116	ENSMUSG00000006345	Ggt1	CD224|GGT|GGT 1|GGT-1|Ggtp|dwg	gamma-glutamyltransferase 1	protein-coding	0.030000	0.587065	
mm_59889.1	chr7	30306768	30306968	+	1	NA	NA	NA	-1885	NM_198027	233065	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	0.000000	0.512438	
mm_42225.1	chr5	113490432	113490632	+	1	NA	NA	NA	-59888	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.065000	0.621891	
mm_149984.1	chr19	29159888	29160088	+	1	NA	NA	NA	24709	NR_029778	724062		NR_029778	ENSMUSG00000065556	Mir101b	Mirn101b|mir-101b	microRNA 101b	ncRNA	0.050000	0.452736	
mm_101733.1	chr11	43232171	43232371	-	1	NA	NA	NA	82394	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding	0.020000	0.457711	
mm_47755.1	chr5	131307174	131307374	-	1	NA	NA	NA	248	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.065000	0.631841	
mm_122582.1	chr14	50836358	50836558	-	1	NA	NA	NA	28512	NM_009632	11546	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0.030000	0.601990	
mm_28984.1	chr3	101283059	101283259	-	1	NA	NA	NA	4780	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.020000	0.512438	
mm_102680.1	chr11	65261789	65261989	-	1	NA	NA	NA	8100	NM_145136	214384	Mm.32257	NM_145136	ENSMUSG00000020542	Myocd	BSAC2A|Srfcp	myocardin	protein-coding	0.010000	0.407960	
mm_45672.1	chr5	77216120	77216320	-	1	NA	NA	NA	-4749	NM_001289768	69982	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0.010000	0.517413	
mm_55946.1	chr6	85126029	85126229	-	1	NA	NA	NA	-35	NM_001034902	545861	Mm.321419	NM_001034902	ENSMUSG00000072952	Gm5878	EG545861	predicted gene 5878	protein-coding	0.085000	0.686567	
mm_161978.1	chr19	13619003	13619203	+	1	NA	NA	NA	-61	NM_146636	258629	Mm.271479	NM_146636	ENSMUSG00000094846	Olfr1487	MOR202-18	olfactory receptor 1487	protein-coding	0.015000	0.308458	
mm_87745.1	chr10	60266905	60267105	+	1	NA	NA	NA	-10623	NM_001146123	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.547264	
mm_166941.1	chr7	43431989	43432189	+	1	NA	NA	NA	1988	NM_177693	233187	Mm.267027	NM_177693	ENSMUSG00000004613	Lim2	19kDa|4833403J20|MP19|To3	lens intrinsic membrane protein 2	protein-coding	0.000000	0.487562	
mm_113988.1	chr13	52582698	52582898	+	1	NA	NA	NA	-639	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.040000	0.522388	
mm_78730.1	chr9	41581154	41581354	+	1	NA	NA	NA	1	NR_015483	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.035000	0.606965	
mm_23636.1	chr3	66985586	66985786	+	1	NA	NA	NA	14	NM_025822	66880	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	0.070000	0.592040	
mm_144298.1	chr18	12256193	12256393	+	1	NA	NA	NA	-19907	NM_008720	18145	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	Niemann-Pick type C1	protein-coding	0.015000	0.487562	47(ACTTCTAAAAGG,-,0.00)
mm_161866.1	chr18	35214804	35215004	+	1	NA	NA	NA	120	NM_178005	107065	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0.035000	0.482587	
mm_37213.1	chr4	117887223	117887423	-	1	NA	NA	NA	6	NM_033617	114143	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	0.135000	0.741294	
mm_40428.1	chr5	53555679	53555879	+	1	NA	NA	NA	0	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.020000	0.502488	
mm_47438.1	chr5	123181398	123181598	-	1	NA	NA	NA	1188	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.015000	0.582090	
mm_139755.1	chr17	64078809	64079009	+	1	NA	NA	NA	-28237	NR_130982	68771	Mm.443351	NR_130982		1110058D11Rik	-	RIKEN cDNA 1110058D11 gene	ncRNA	0.015000	0.497512	
mm_163195.1	chr11	95611184	95611384	+	1	NA	NA	NA	-23586	NM_033217	18053	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	0.010000	0.532338	
mm_91873.1	chr10	59582875	59583075	-	1	NA	NA	NA	33717	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.010000	0.388060	
mm_136588.1	chr17	4994829	4995029	+	1	NA	NA	NA	-145	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.145000	0.751244	
mm_103966.1	chr11	84491432	84491632	-	1	NA	NA	NA	21969	NM_019816	56321	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0.010000	0.452736	-91(TCATAAATAGCC,+,0.00)
mm_150263.1	chr19	34217111	34217311	+	1	NA	NA	NA	24941	NM_029682	76630	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.015000	0.487562	
mm_48716.1	chr5	147307173	147307373	-	1	NA	NA	NA	-24	NM_007673	12591	Mm.20358	NM_007673	ENSMUSG00000029646	Cdx2	Cdx-2	caudal type homeobox 2	protein-coding	0.070000	0.587065	
mm_153581.1	chr19	43500188	43500388	-	1	NA	NA	NA	24317	NM_010324	14718	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.025000	0.487562	
mm_5000.1	chr1	191911591	191911791	+	1	NA	NA	NA	-4164	NR_030669	98736	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	0.010000	0.383085	
mm_11146.1	chr2	28513039	28513239	+	1	NA	NA	NA	-28	NM_009058	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.170000	0.771144	
mm_22015.1	chr2	167833545	167833745	-	1	NA	NA	NA	-98682	NM_011201	19246	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.025000	0.532338	-33(GCTCATAAAAAG,-,0.00)
mm_123988.1	chr14	75754354	75754554	-	1	NA	NA	NA	39	NM_177381	338337	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0.145000	0.776119	
mm_34152.1	chr4	139380529	139380729	+	1	NA	NA	NA	-30	NM_001160319	69116	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0.140000	0.701493	
mm_31566.1	chr4	57568052	57568252	+	1	NA	NA	NA	-96	NM_001304544	677884	Mm.331630	NM_001304544	ENSMUSG00000089945	Pakap	AF064781|Gm20459|Palm2-Akap2|Palm2Akap2|Palm2akap2	paralemmin A kinase anchor protein	protein-coding	0.130000	0.776119	
mm_9009.1	chr1	166002500	166002700	-	1	NA	NA	NA	34	NM_198932	18986	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0.080000	0.577114	
mm_13727.1	chr2	117448923	117449123	+	1	NA	NA	NA	-106146	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.000000	0.452736	
mm_81439.1	chr9	109102696	109102896	+	1	NA	NA	NA	7360	NM_172775	235611	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.005000	0.577114	
mm_62248.1	chr7	99267302	99267502	+	1	NA	NA	NA	-45	NM_010837	17760	Mm.154087	NM_010837	ENSMUSG00000055407	Map6	2810411E12Rik|Map-6|Mtap6|STOP	microtubule-associated protein 6	protein-coding	0.045000	0.572139	
mm_11024.1	chr2	26630416	26630616	+	1	NA	NA	NA	2059	NM_019833	56279	Mm.279863	NM_019833	ENSMUSG00000036186	Fam69b	AB030186|AW209000|B230317C12Rik|PIP49	family with sequence similarity 69, member B	protein-coding	0.000000	0.447761	
mm_84205.1	chr9	60687812	60688012	-	1	NA	NA	NA	222	NM_145616	102747	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0.040000	0.512438	
mm_154870.1	chrX	20681064	20681264	+	1	NA	NA	NA	-6790	NM_001310456	18555	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	0.020000	0.437811	
mm_17036.1	chr2	20669212	20669412	-	1	NA	NA	NA	149799	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.010000	0.447761	-34(CTGTATAAAAAG,-,0.00)
mm_99678.1	chr11	105989152	105989352	+	1	NA	NA	NA	-3558	NR_104047	100379610	Mm.754	NR_104047	ENSMUSG00000085297	Gm11651	OTTMUSG00000003114	predicted gene 11651	ncRNA	0.015000	0.597015	
mm_44461.1	chr5	22550233	22550433	-	1	NA	NA	NA	-2	NM_011959	26429	Mm.412217	NM_011959	ENSMUSG00000029012	Orc5	AL033327|MmORC5|Orc5l	origin recognition complex, subunit 5	protein-coding	0.090000	0.656716	
mm_62837.1	chr7	113766059	113766259	+	1	NA	NA	NA	161	NM_145584	233744	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.105000	0.706468	
mm_116096.1	chr13	28809592	28809792	-	1	NA	NA	NA	75730	NR_045054	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.000000	0.398010	
mm_119436.1	chr14	46387377	46387577	+	1	NA	NA	NA	3192	NM_001316360	12159	Mm.6813	NM_007554	ENSMUSG00000021835	Bmp4	Bmp-4|Bmp2b|Bmp2b-1|Bmp2b1	bone morphogenetic protein 4	protein-coding	0.100000	0.726368	
mm_63991.1	chr7	140096967	140097167	+	1	NA	NA	NA	3671	NM_009475	22264	Mm.439707	NM_009475	ENSMUSG00000025467	Prap1	Upa	proline-rich acidic protein 1	protein-coding	0.020000	0.557214	
mm_123429.1	chr14	64440717	64440917	-	1	NA	NA	NA	209	NM_001253715	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.080000	0.641791	
mm_50977.1	chr6	62050729	62050929	+	1	NA	NA	NA	-870019	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA	0.005000	0.507463	
mm_3242.1	chr1	136017966	136018166	+	1	NA	NA	NA	65	NM_025439	66241	Mm.41773	NM_025439	ENSMUSG00000026411	Tmem9	1500015G18Rik|AW545782	transmembrane protein 9	protein-coding	0.045000	0.621891	
mm_85092.1	chr9	92227177	92227377	-	1	NA	NA	NA	-22917	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.000000	0.492537	
mm_38317.1	chr4	137320435	137320635	-	1	NA	NA	NA	37224	NM_009861	12540	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.020000	0.447761	
mm_166471.1	chr5	142905920	142906120	-	1	NA	NA	NA	734	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.125000	0.721393	
mm_154192.1	chr19	58860859	58861059	-	1	NA	NA	NA	25	NM_175199	73442	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0.075000	0.691542	
mm_74390.1	chr8	128732831	128733031	+	1	NA	NA	NA	47277	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.000000	0.368159	
mm_136676.1	chr17	6256748	6256948	+	1	NA	NA	NA	-13622	NM_001033178	77106	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	0.125000	0.771144	
mm_24125.1	chr3	88200518	88200718	+	1	NA	NA	NA	-14553	NR_037276	100526540		NR_037276	ENSMUSG00000092988	Mir3093	mir-3093|mmu-mir-3093	microRNA 3093	ncRNA	0.070000	0.611940	
mm_125594.1	chr15	59648456	59648656	+	1	NA	NA	NA	-98	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.070000	0.636816	
mm_76592.1	chr8	89042722	89042922	-	1	NA	NA	NA	1340	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.150000	0.800995	
mm_86641.1	chr10	14117418	14117618	+	1	NA	NA	NA	151139	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.000000	0.388060	
mm_51174.1	chr6	70726569	70726769	+	1	NA	NA	NA	65506	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.025000	0.482587	
mm_47884.1	chr5	134703276	134703476	-	1	NA	NA	NA	-14786	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.010000	0.577114	
mm_21183.1	chr2	155074379	155074579	-	1	NA	NA	NA	18	NM_016661	269378	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	0.080000	0.587065	
mm_110033.1	chr12	16894605	16894805	-	1	NA	NA	NA	-273	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0.140000	0.791045	
mm_103820.1	chr11	83003655	83003855	-	1	NA	NA	NA	-11925	NM_172796	237886	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.010000	0.407960	
mm_38892.1	chr4	149773998	149774198	-	1	NA	NA	NA	169	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.160000	0.751244	
mm_89979.1	chr10	111595829	111596029	+	1	NA	NA	NA	-1656	NR_045344	71321	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.015000	0.527363	
mm_142590.1	chr17	46751958	46752158	-	1	NA	NA	NA	156	NM_001305989	72029	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	0.080000	0.681592	
mm_23107.1	chr3	37420249	37420449	+	1	NA	NA	NA	399	NM_021343	57815	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0.120000	0.681592	
mm_46346.1	chr5	102072070	102072270	-	1	NA	NA	NA	-2249	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.005000	0.467662	
mm_50691.1	chr6	51589274	51589474	+	1	NA	NA	NA	44851	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.020000	0.467662	-82(GCATTTAAAGCC,+,0.00)
mm_101137.1	chr11	12557716	12557916	-	1	NA	NA	NA	-92856	NM_001282993	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.025000	0.477612	
mm_87405.1	chr10	45685896	45686096	+	1	NA	NA	NA	108167	NM_172473	209462	Mm.458633	NM_172473	ENSMUSG00000038822	Hace1	1700042J16Rik|A730034A22Rik|BC025474	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	protein-coding	0.010000	0.318408	
mm_87883.1	chr10	61715204	61715404	+	1	NA	NA	NA	41	NM_001284300	71361	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	0.105000	0.721393	
mm_85659.1	chr9	107668881	107669081	-	1	NA	NA	NA	-13	NM_001199218	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.005000	0.562189	
mm_35315.1	chr4	25615585	25615785	-	1	NA	NA	NA	184318	NM_010243	14348	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.000000	0.383085	
mm_147050.1	chr18	34931899	34932099	-	1	NA	NA	NA	4	NM_144866	225363	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.095000	0.676617	
mm_53360.1	chr6	129359663	129359863	+	1	NA	NA	NA	9519	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.010000	0.328358	
mm_15833.1	chr2	164684954	164685154	+	1	NA	NA	NA	-53	NM_001012704	408190	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	0.000000	0.532338	
mm_162570.1	chr1	173974951	173975151	-	1	NA	NA	NA	7793	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.005000	0.393035	
mm_20496.1	chr2	130284337	130284537	-	1	NA	NA	NA	14	NM_130884	170718	Mm.29590	NM_130884	ENSMUSG00000027406	Idh3b	C78231	isocitrate dehydrogenase 3 (NAD+) beta	protein-coding	0.110000	0.671642	
mm_151064.1	chr19	47253332	47253532	+	1	NA	NA	NA	20157	NR_105961	102466782		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.190000	0.746269	
mm_147199.1	chr18	37874264	37874464	-	1	NA	NA	NA	-19704	NR_105945	102465592		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.015000	0.412935	
mm_39832.1	chr5	30853691	30853891	+	1	NA	NA	NA	-8016	NM_001310516	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.010000	0.577114	56(CCCCAGAAAAGC,-,0.00)
mm_134526.1	chr16	19236763	19236963	-	1	NA	NA	NA	49878	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.010000	0.597015	
mm_117367.1	chr13	70841700	70841900	-	1	NA	NA	NA	11	NM_172053	271127	Mm.115970	NM_172053	ENSMUSG00000049538	Adamts16	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	protein-coding	0.030000	0.636816	
mm_24298.1	chr3	89365230	89365430	+	1	NA	NA	NA	-77	NM_029974	77772	Mm.164013	NM_029974	ENSMUSG00000042672	Dcst1	A330106H01Rik	DC-STAMP domain containing 1	protein-coding	0.025000	0.552239	
mm_51257.1	chr6	71935924	71936124	+	1	NA	NA	NA	26971	NM_009088	20019	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0.000000	0.502488	
mm_19390.1	chr2	91333128	91333328	-	1	NA	NA	NA	68113	NM_023854	77038	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0.010000	0.407960	
mm_70241.1	chr8	3353558	3353758	+	1	NA	NA	NA	243	NM_001033378	319493	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0.010000	0.502488	-94(AACCATAAAAAG,-,0.00),-92(CCATAAAAAGCC,+,0.00)
mm_63251.1	chr7	126622805	126623005	+	1	NA	NA	NA	2565	NM_019738	56312	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	0.005000	0.388060	
mm_52901.1	chr6	122707500	122707700	+	1	NA	NA	NA	35	NM_001289828	71950	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	0.015000	0.497512	
mm_17818.1	chr2	33744927	33745127	-	1	NA	NA	NA	-60789	NR_045729	320482	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0.010000	0.477612	86(GCCTTTAAAAAA,-,0.00)
mm_108294.1	chr12	79208786	79208986	+	1	NA	NA	NA	-27	NM_001313971	77974	Mm.274373	NM_030017	ENSMUSG00000021123	Rdh12	-	retinol dehydrogenase 12	protein-coding	0.010000	0.517413	
mm_83058.1	chr9	37545164	37545364	-	1	NA	NA	NA	6009	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.045000	0.621891	
mm_122151.1	chr14	31251171	31251371	-	1	NA	NA	NA	-53	NM_027949	71838	Mm.5348	NM_027949	ENSMUSG00000021902	Phf7	1700006H01Rik|1700010P14Rik|AI427892|AW555949	PHD finger protein 7	protein-coding	0.165000	0.716418	
mm_169010.1	chr13	107121703	107121903	+	1	NA	NA	NA	99233	NR_015471	100040322	Mm.133867	NR_015471		3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.085000	0.606965	
mm_1137.1	chr1	60609126	60609326	+	1	NA	NA	NA	-42461	NM_001045513	77300	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0.015000	0.492537	
mm_39218.1	chr4	156192497	156192697	-	1	NA	NA	NA	4891	NM_021604	11603	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0.015000	0.611940	
mm_11335.1	chr2	30636456	30636656	+	1	NA	NA	NA	41455	NR_136917	665635	Mm.450149	NR_136917		Gm14486	OTTMUSG00000016802	predicted gene 14486	ncRNA	0.010000	0.517413	
mm_66518.1	chr7	45103882	45104082	-	1	NA	NA	NA	-160	NM_010189	14132	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0.025000	0.532338	
mm_93603.1	chr10	117233924	117234124	-	1	NA	NA	NA	4657	NM_029906	77397	Mm.118350	NM_029906	ENSMUSG00000020177	9530003J23Rik	Lyzf1	RIKEN cDNA 9530003J23 gene	protein-coding	0.010000	0.383085	
mm_66770.1	chr7	46742880	46743080	-	1	NA	NA	NA	0	NM_009117	20208	Mm.148800	NM_009117	ENSMUSG00000074115	Saa1	Saa-1|Saa2	serum amyloid A 1	protein-coding	0.005000	0.557214	
mm_167706.1	chr9	95805335	95805535	-	1	NA	NA	NA	39844	NM_001033210	102502	Mm.11869	NM_001033210	ENSMUSG00000049493	Pls1	AI427122	plastin 1 (I-isoform)	protein-coding	0.030000	0.442786	
mm_122602.1	chr14	51041826	51042026	-	1	NA	NA	NA	-59	NM_183032	328401	Mm.99528	NM_183032	ENSMUSG00000052382	Rnase9	ESRL|Rak1	ribonuclease, RNase A family, 9 (non-active)	protein-coding	0.010000	0.517413	
mm_84312.1	chr9	63711889	63712089	-	1	NA	NA	NA	46005	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.040000	0.507463	
mm_70244.1	chr8	3360707	3360907	+	1	NA	NA	NA	7392	NM_001033378	319493	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0.025000	0.641791	
mm_93829.1	chr10	121585778	121585978	-	1	NA	NA	NA	916	NM_019786	56480	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.015000	0.373134	-63(CTTTTTATATTG,+,0.00)
mm_2070.1	chr1	87626585	87626785	+	1	NA	NA	NA	6373	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.005000	0.552239	
mm_6734.1	chr1	82832393	82832593	-	1	NA	NA	NA	-6967	NM_001310713	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.010000	0.492537	
mm_138300.1	chr17	34631020	34631220	+	1	NA	NA	NA	1434	NM_030890	260297	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31	proline-rich transmembrane protein 1	protein-coding	0.090000	0.696517	
mm_74187.1	chr8	123653698	123653898	+	1	NA	NA	NA	-131	NM_133955	69581	Mm.168257	NM_133955	ENSMUSG00000039960	Rhou	2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K	ras homolog family member U	protein-coding	0.160000	0.746269	
mm_118121.1	chr13	104109530	104109730	-	1	NA	NA	NA	-16	NM_029447	75805	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	0.110000	0.756219	
mm_161878.1	chr18	37355024	37355224	+	1	NA	NA	NA	-147	NM_053133	93879	Mm.348052	NM_053133	ENSMUSG00000045876	Pcdhb8	Pcdhb5C|PcdhbH	protocadherin beta 8	protein-coding	0.020000	0.452736	
mm_58280.1	chr6	145862110	145862310	-	1	NA	NA	NA	3210	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.010000	0.472637	
mm_64641.1	chr7	4008012	4008212	-	1	NA	NA	NA	55092	NM_001302677	52855	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.000000	0.383085	
mm_105645.1	chr11	107131795	107131995	-	1	NA	NA	NA	27	NM_176850	207165	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0.170000	0.875622	
mm_51450.1	chr6	80458647	80458847	+	1	NA	NA	NA	439104	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.000000	0.199005	
mm_82177.1	chr9	123851307	123851507	+	1	NA	NA	NA	254	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.045000	0.562189	
mm_166060.1	chr4	133686205	133686405	+	1	NA	NA	NA	-13658	NM_001145956	230801	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.005000	0.507463	
mm_111276.1	chr12	85341514	85341714	-	1	NA	NA	NA	-2252	NM_145138	217718	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.010000	0.457711	
mm_33947.1	chr4	137296796	137296996	+	1	NA	NA	NA	19261	NM_009523	22417	Mm.20355	NM_009523	ENSMUSG00000036856	Wnt4	Wnt-4	wingless-type MMTV integration site family, member 4	protein-coding	0.005000	0.363184	
mm_40358.1	chr5	48001305	48001505	+	1	NA	NA	NA	18250	NM_001291228	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding	0.015000	0.472637	
mm_37712.1	chr4	129491014	129491214	-	1	NA	NA	NA	-76	NM_001085491	68233	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0.040000	0.597015	
mm_91794.1	chr10	53379737	53379937	-	1	NA	NA	NA	14	NM_001204983	100038725	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	ENSMUSG00000038594|Gm9766	centrosomal protein 85-like	protein-coding	0.095000	0.746269	
mm_123694.1	chr14	69688474	69688674	-	1	NA	NA	NA	-3674	NR_105915	102465573		NR_105915	ENSMUSG00000098666	Mir6950	Gm27586|mmu-mir-6950	microRNA 6950	ncRNA	0.010000	0.497512	
mm_8386.1	chr1	151344281	151344481	-	1	NA	NA	NA	-117	NM_001039512	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.095000	0.686567	
mm_52114.1	chr6	97915094	97915294	+	1	NA	NA	NA	-14623	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.025000	0.427861	
mm_83146.1	chr9	40455741	40455941	-	1	NA	NA	NA	-77	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.095000	0.646766	
mm_2450.1	chr1	100252553	100252753	+	1	NA	NA	NA	479888	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0.005000	0.472637	
mm_132976.1	chr16	52049585	52049785	+	1	NA	NA	NA	18136	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.005000	0.442786	
mm_38594.1	chr4	141825492	141825692	-	1	NA	NA	NA	413	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.000000	0.517413	
mm_18260.1	chr2	52289599	52289799	-	1	NA	NA	NA	-1303	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.020000	0.457711	
mm_35023.1	chr4	3973501	3973701	-	1	NA	NA	NA	34177	NR_104356	66433	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	0.050000	0.512438	
mm_86645.1	chr10	14705488	14705688	+	1	NA	NA	NA	-21	NR_045824	69412	Mm.259735	NR_045824	ENSMUSG00000019865	1700016L04Rik	-	RIKEN cDNA 1700016L04 gene	ncRNA	0.085000	0.567164	
mm_96697.1	chr11	69632865	69633065	+	1	NA	NA	NA	-6	NM_011814	23879	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0.145000	0.791045	
mm_52936.1	chr6	122933893	122934093	+	1	NA	NA	NA	12145	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.005000	0.422886	
mm_149657.1	chr19	18713076	18713276	+	1	NA	NA	NA	-60	NM_177640	225995	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	0.140000	0.731343	
mm_1488.1	chr1	71714057	71714257	+	1	NA	NA	NA	60822	NR_040308	100042814	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	ENSMUSG00000073652|Gm15456|OTTMUSG00000022136	apolipoprotein L 7d	ncRNA	0.020000	0.457711	
mm_102671.1	chr11	65177993	65178193	-	1	NA	NA	NA	-15132	NM_175003	216831	Mm.134338	NM_175003	ENSMUSG00000033389	Arhgap44	6330543G20|AI840762|AU040829|AW493732|Rich2	Rho GTPase activating protein 44	protein-coding	0.005000	0.318408	
mm_152212.1	chr19	7961069	7961269	-	1	NA	NA	NA	4858	NM_134256	171405	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	Oat9|mOAT6-L|mOAT6-S	solute carrier family 22, member 27	protein-coding	0.030000	0.363184	
mm_56585.1	chr6	106799973	106800173	-	1	NA	NA	NA	14	NM_021449	58799	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.100000	0.696517	
mm_166444.1	chr5	137264266	137264466	+	1	NA	NA	NA	-23888	NM_009599	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.015000	0.482587	
mm_134674.1	chr16	22402564	22402764	-	1	NA	NA	NA	36906	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.005000	0.427861	-37(CTCTTTAAAGGC,+,0.00),-37(CTCTTTAAAGGC,-,0.00),0(GCACTTAAAAGG,-,0.00)
mm_87100.1	chr10	33139102	33139302	+	1	NA	NA	NA	55719	NM_029726	76757	Mm.338508	NM_029726	ENSMUSG00000019787	Trdn	2310045H21Rik|EG432451|TDN	triadin	protein-coding	0.015000	0.412935	
mm_12268.1	chr2	68970749	68970949	+	1	NA	NA	NA	109408	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.005000	0.383085	
mm_45268.1	chr5	64467853	64468053	-	1	NA	NA	NA	-11	NR_040681	69999	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.000000	0.437811	
mm_137932.1	chr17	32658872	32659072	+	1	NA	NA	NA	-511	NM_001101588	631304	Mm.328950	NM_001101588	ENSMUSG00000090700	Cyp4f40	EG631304	cytochrome P450, family 4, subfamily f, polypeptide 40	protein-coding	0.000000	0.517413	
mm_81292.1	chr9	108336710	108336910	+	1	NA	NA	NA	-2270	NM_008160	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.020000	0.437811	
mm_42251.1	chr5	114003586	114003786	+	1	NA	NA	NA	-49	NM_010018	13142	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	0.010000	0.621891	
mm_91281.1	chr10	24711841	24712041	-	1	NA	NA	NA	218	NM_001308327	18605	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	0.140000	0.741294	-88(GCCTATTAAAGC,-,0.00)
mm_16175.1	chr2	172550936	172551136	+	1	NA	NA	NA	45	NM_001159696	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding	0.140000	0.681592	-78(GCCTCTTAAGGG,-,0.00),-77(CCTCTTAAGGGA,+,0.00)
mm_92485.1	chr10	78297851	78298051	-	1	NA	NA	NA	42256	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.005000	0.557214	
mm_83881.1	chr9	55283567	55283767	-	1	NA	NA	NA	-42	NM_032002	83961	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.045000	0.542289	
mm_74256.1	chr8	124863008	124863208	+	1	NA	NA	NA	75	NM_010322	14712	Mm.29114	NM_010322	ENSMUSG00000031985	Gnpat	AU019525|D1Ertd819e|DHAPAT	glyceronephosphate O-acyltransferase	protein-coding	0.115000	0.711443	
mm_80017.1	chr9	67880339	67880539	+	1	NA	NA	NA	40043	NM_177184	320528	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.020000	0.502488	
mm_76717.1	chr8	94711311	94711511	-	1	NA	NA	NA	-15169	NM_026385	67801	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	0.005000	0.547264	-68(GCCCTTAAATGG,-,0.00),-66(CCTTAAATGGAA,+,0.00)
mm_13151.1	chr2	92382818	92383018	+	1	NA	NA	NA	0	NM_183112	75641	Mm.330409	NM_183112	ENSMUSG00000044916	1700029I15Rik	1700021K07Rik	RIKEN cDNA 1700029I15 gene	protein-coding	0.010000	0.547264	
mm_108461.1	chr12	83520342	83520542	+	1	NA	NA	NA	-24	NM_030246	73828	Mm.38238	NM_030246	ENSMUSG00000021222	Dcaf4	1110018E21Rik|Wdr21	DDB1 and CUL4 associated factor 4	protein-coding	0.070000	0.592040	
mm_80109.1	chr9	70399326	70399526	+	1	NA	NA	NA	6327	NR_049200	100885839		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0.010000	0.442786	
mm_31372.1	chr4	47367160	47367360	+	1	NA	NA	NA	14038	NM_009370	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.010000	0.393035	
mm_150880.1	chr19	45076593	45076793	+	1	NA	NA	NA	554	NM_178929	107250	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.040000	0.552239	-89(GCTTTTATACAG,+,0.00)
mm_101598.1	chr11	34737726	34737926	-	1	NA	NA	NA	46079	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.020000	0.437811	-34(GCTTATTAAAGG,-,0.00)
mm_106229.1	chr11	117267405	117267605	-	1	NA	NA	NA	1259	NM_001113487	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.070000	0.696517	
mm_79604.1	chr9	58582164	58582364	+	1	NA	NA	NA	24	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.130000	0.761194	
mm_123912.1	chr14	73325864	73326064	-	1	NA	NA	NA	-173	NM_009029	19645	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb	retinoblastoma 1	protein-coding	0.180000	0.835821	
mm_107264.1	chr12	29123217	29123417	+	1	NA	NA	NA	371489	NM_201357	380752	Mm.273724	NM_201357	ENSMUSG00000036613	Tssc1	D12Ertd604e|Eipr1	tumor suppressing subtransferable candidate 1	protein-coding	0.015000	0.492537	
mm_147642.1	chr18	60269634	60269834	-	1	NA	NA	NA	3533	NM_001034859	225594	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	0.010000	0.398010	
mm_112742.1	chr13	19339772	19339972	+	1	NA	NA	NA	55941	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.487562	
mm_97323.1	chr11	76945566	76945766	+	1	NA	NA	NA	10	NM_178645	104184	Mm.399785	NM_178645	ENSMUSG00000020840	Blmh	AI035728|Bh|Bmh	bleomycin hydrolase	protein-coding	0.105000	0.711443	
mm_75002.1	chr8	27228443	27228643	-	1	NA	NA	NA	1045	NM_013462	11556	Mm.278475	NM_013462	ENSMUSG00000031489	Adrb3	Adrb-3	adrenergic receptor, beta 3	protein-coding	0.020000	0.582090	-74(TCCTTTAAAAGC,-,0.00),-73(CCTTTAAAAGCA,+,0.00)
mm_27174.1	chr3	34019705	34019905	-	1	NA	NA	NA	-274	NM_001113189	14359	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0.150000	0.761194	
mm_166381.1	chr5	131011195	131011395	+	1	NA	NA	NA	296227	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.005000	0.452736	-76(TTGTTTTAAAGG,-,0.00)
mm_98506.1	chr11	94952047	94952247	+	1	NA	NA	NA	-15446	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.005000	0.527363	
mm_90538.1	chr10	128091030	128091230	+	1	NA	NA	NA	-1653	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.010000	0.537313	
mm_168968.1	chr12	82789565	82789765	-	1	NA	NA	NA	149490	NR_046045	74283	Mm.398247	NR_046045	ENSMUSG00000100890	1700085C21Rik	-	RIKEN cDNA 1700085C21 gene	ncRNA	0.030000	0.582090	
mm_19155.1	chr2	80581371	80581571	-	1	NA	NA	NA	-289	NM_016965	50884	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0.100000	0.701493	
mm_16929.1	chr2	13793748	13793948	-	1	NA	NA	NA	-328	NM_145838	241230	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	0.110000	0.686567	
mm_149650.1	chr19	18631894	18632094	+	1	NA	NA	NA	-22	NM_145497	225994	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	0.065000	0.616915	
mm_143289.1	chr17	65868017	65868217	-	1	NA	NA	NA	16806	NM_001198949	19765	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.015000	0.457711	-74(CTTTTTAAAAGG,+,0.00),-74(CTTTTTAAAAGG,-,0.00)
mm_79453.1	chr9	56123160	56123360	+	1	NA	NA	NA	33284	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.020000	0.577114	
mm_46050.1	chr5	92083597	92083797	-	1	NA	NA	NA	47	NM_011816	23881	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.080000	0.651741	
mm_2895.1	chr1	131918916	131919116	+	1	NA	NA	NA	8558	NM_001145804	98415	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.010000	0.363184	
mm_53512.1	chr6	135713915	135714115	+	1	NA	NA	NA	55102	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	0.020000	0.527363	
mm_164797.1	chr18	20745302	20745502	+	1	NA	NA	NA	1002	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.050000	0.562189	
mm_133267.1	chr16	77362350	77362550	+	1	NA	NA	NA	33122	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.005000	0.328358	
mm_4710.1	chr1	180942264	180942464	+	1	NA	NA	NA	-154	NM_144794	208795	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.090000	0.626866	
mm_133427.1	chr16	87495923	87496123	+	1	NA	NA	NA	-50	NR_040375	414095	Mm.166361	NR_040375	ENSMUSG00000093606	B130034C11Rik	-	RIKEN cDNA B130034C11 gene	ncRNA	0.070000	0.522388	
mm_167298.1	chr8	52830464	52830664	-	1	NA	NA	NA	-681138	NM_001205054	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.005000	0.263682	54(GAGTATATAAGA,-,0.00)
mm_58328.1	chr6	146577351	146577551	-	1	NA	NA	NA	384	NM_138757	71177	Mm.271774	NM_138757	ENSMUSG00000040250	Asun	4933424B01Rik|Spata30	asunder, spermatogenesis regulator	protein-coding	0.115000	0.661692	
mm_29021.1	chr3	101924380	101924580	-	1	NA	NA	NA	-27	NM_001039371	242126	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	0.130000	0.706468	
mm_62772.1	chr7	112354466	112354666	+	1	NA	NA	NA	-13742	NM_027587	100504195	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	0.015000	0.512438	
mm_9295.1	chr1	171637155	171637355	-	1	NA	NA	NA	4645	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.035000	0.482587	
mm_38689.1	chr4	145194922	145195122	-	1	NA	NA	NA	-17	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.100000	0.651741	
mm_124445.1	chr14	118876563	118876763	-	1	NA	NA	NA	21713	NM_001160099	58187	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0.010000	0.417910	-62(CCTTAAAAGTCC,+,0.00)
mm_4058.1	chr1	165841576	165841776	+	1	NA	NA	NA	52995	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.020000	0.417910	
mm_47369.1	chr5	122949141	122949341	-	1	NA	NA	NA	39858	NM_001003953	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.020000	0.552239	-33(CTTCATAAAAGG,-,0.00)
mm_110689.1	chr12	69183938	69184138	-	1	NA	NA	NA	29	NM_025589	66483	Mm.379115	NM_025589	ENSMUSG00000049751	Rpl36al	2410038A03Rik|RPL36A	ribosomal protein L36A-like	protein-coding	0.115000	0.636816	
mm_2512.1	chr1	106230709	106230909	+	1	NA	NA	NA	58940	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.000000	0.348259	
mm_77327.1	chr8	119426487	119426687	-	1	NA	NA	NA	-10575	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.005000	0.502488	
mm_37584.1	chr4	126338514	126338714	-	1	NA	NA	NA	-13415	NM_011902	24084	Mm.23895	NM_011902	ENSMUSG00000028845	Tekt2	AU014974|tektin-t	tektin 2	protein-coding	0.000000	0.283582	
mm_142193.1	chr17	36951494	36951694	-	1	NA	NA	NA	198	NM_029632	76497	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	0.040000	0.557214	
mm_154667.1	chrX	7878649	7878849	+	1	NA	NA	NA	443	NM_138606	18715	Mm.347478	NM_138606	ENSMUSG00000031155	Pim2	DXCch3|Pim-2	proviral integration site 2	protein-coding	0.085000	0.631841	
mm_67671.1	chr7	88299399	88299599	-	1	NA	NA	NA	21414	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.010000	0.437811	-34(CCTTATATGCAG,+,0.00)
mm_114537.1	chr13	73699856	73700056	+	1	NA	NA	NA	130	NM_027780	71390	Mm.105251	NM_027780		Slc6a19os	5430425J12Rik	solute carrier family 6 (neurotransmitter transporter), member 19, opposite strand	protein-coding	0.030000	0.601990	-34(TTCTCTTAAAGG,-,0.00),-33(TCTCTTAAAGGC,+,0.00)
mm_100839.1	chr11	5707583	5707783	-	1	NA	NA	NA	16	NM_026080	64660	Mm.7328	NM_026080	ENSMUSG00000020477	Mrps24	3110030K20Rik|AI414579|Rpms24	mitochondrial ribosomal protein S24	protein-coding	0.145000	0.771144	
mm_8080.1	chr1	135585614	135585814	-	1	NA	NA	NA	-359	NM_173437	215690	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.070000	0.641791	
mm_3888.1	chr1	161150886	161151086	+	1	NA	NA	NA	8274	NM_028664	73844	Mm.38830	NM_028664	ENSMUSG00000044835	Ankrd45	4933409K03Rik	ankyrin repeat domain 45	protein-coding	0.010000	0.348259	
mm_93386.1	chr10	106007369	106007569	-	1	NA	NA	NA	165990	NM_025602	52713	Mm.339224	NM_025602	ENSMUSG00000019897	Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding	0.010000	0.462687	
mm_14134.1	chr2	126035610	126035810	+	1	NA	NA	NA	1052	NM_008008	14178	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0.025000	0.467662	
mm_44033.1	chr5	147431915	147432115	+	1	NA	NA	NA	1435	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.015000	0.288557	18(GCTTAAATGGTA,+,0.00)
mm_13401.1	chr2	103970269	103970469	+	1	NA	NA	NA	82	NM_001142335	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.145000	0.771144	
mm_162494.1	chr1	136247358	136247558	-	1	NA	NA	NA	-13178	NM_028872	67313	Mm.36763	NM_028872	ENSMUSG00000041605	5730559C18Rik	1700034M08Rik|4933426C09Rik|AI586180|D1Mgi54	RIKEN cDNA 5730559C18 gene	protein-coding	0.010000	0.567164	
mm_24580.1	chr3	93444679	93444879	+	1	NA	NA	NA	2449	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.065000	0.621891	
mm_157379.1	chrX	37901258	37901458	-	1	NA	NA	NA	412	NM_023894	104384	Mm.156958	NM_023894	ENSMUSG00000068048	Rhox9	1600026O01Rik|Gpbox|Psx2	reproductive homeobox 9	protein-coding	0.025000	0.537313	
mm_93955.1	chr10	127263230	127263430	-	1	NA	NA	NA	33	NM_008447	16572	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	0.025000	0.552239	
mm_82790.1	chr9	29178990	29179190	-	1	NA	NA	NA	784039	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.015000	0.552239	
mm_113865.1	chr13	48490909	48491109	+	1	NA	NA	NA	22401	NM_001164575	67911	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	0.025000	0.557214	
mm_106508.1	chr11	120457960	120458160	-	1	NA	NA	NA	3	NM_025560	66431	Mm.45063	NM_025560	ENSMUSG00000039670	Oxld1	1810049H13Rik	oxidoreductase like domain containing 1	protein-coding	0.085000	0.681592	
mm_53913.1	chr6	3988855	3989055	-	1	NA	NA	NA	-97	NR_138566	21789	Mm.25612	NM_009364	ENSMUSG00000029664	Tfpi2	AV000670|PP5/TFPI-2	tissue factor pathway inhibitor 2	protein-coding	0.005000	0.432836	
mm_148237.1	chr18	80554689	80554889	-	1	NA	NA	NA	-10243	NR_028424	100039348	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.020000	0.442786	67(CTATTTAGAGAC,+,0.00)
mm_77836.1	chr9	5297900	5298100	+	1	NA	NA	NA	-517	NM_009807	12362	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.010000	0.353234	
mm_144468.1	chr18	23771626	23771826	+	1	NA	NA	NA	3263	NR_105778	102465185		NR_105778	ENSMUSG00000098607	Mir6360	Gm27296|mmu-mir-6360	microRNA 6360	ncRNA	0.010000	0.482587	
mm_142182.1	chr17	36272146	36272346	-	1	NA	NA	NA	-242	NM_024468	79263	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0.025000	0.492537	
mm_80546.1	chr9	81863712	81863912	+	1	NA	NA	NA	68	NM_175213	75033	Mm.335329	NM_175213	ENSMUSG00000043289	Mei4	4930486G11Rik	meiotic double-stranded break formation protein 4	protein-coding	0.070000	0.661692	
mm_63940.1	chr7	139834058	139834258	+	1	NA	NA	NA	-16	NM_177469	52389	Mm.39863	NM_177469	ENSMUSG00000025475	Adgra1	2900059M17Rik|D7Ertd680e|Gpr123	adhesion G protein-coupled receptor A1	protein-coding	0.095000	0.716418	
mm_11590.1	chr2	33215998	33216198	+	1	NA	NA	NA	137	NM_011923	26360	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0.020000	0.611940	
mm_122099.1	chr14	30914039	30914239	-	1	NA	NA	NA	9448	NM_008407	16426	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	0.005000	0.507463	
mm_142134.1	chr17	35909915	35910115	-	1	NA	NA	NA	53	NM_001142745	73242	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	0.095000	0.631841	
mm_132699.1	chr16	43363003	43363203	+	1	NA	NA	NA	57093	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.030000	0.507463	
mm_120813.1	chr14	75131134	75131334	+	1	NA	NA	NA	111	NM_001247984	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.045000	0.512438	
mm_2951.1	chr1	132417337	132417537	+	1	NA	NA	NA	-16	NM_172516	213452	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	0.105000	0.716418	
mm_92324.1	chr10	75667975	75668175	-	1	NA	NA	NA	-24067	NM_027890	71733	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0.090000	0.701493	
mm_106032.1	chr11	116077479	116077679	-	1	NA	NA	NA	382	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.050000	0.656716	
mm_62556.1	chr7	102571401	102571601	+	1	NA	NA	NA	-6019	NM_009277	20821	Mm.321227	NM_009277	ENSMUSG00000030966	Trim21	Ro52|Ssa1	tripartite motif-containing 21	protein-coding	0.030000	0.472637	72(CTCCATATGAGG,-,0.00)
mm_34228.1	chr4	141013710	141013910	+	1	NA	NA	NA	3173	NM_008546	17150	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0.020000	0.572139	
mm_96497.1	chr11	68122578	68122778	+	1	NA	NA	NA	-98214	NR_105833	102465219		NR_105833	ENSMUSG00000099174	Mir6406	Gm27981|mmu-mir-6406	microRNA 6406	ncRNA	0.000000	0.328358	43(TTCCTTATAAGA,-,0.00)
mm_21585.1	chr2	164237233	164237433	-	1	NA	NA	NA	1008	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.427861	
mm_14527.1	chr2	132695828	132696028	+	1	NA	NA	NA	5645	NM_028637	73747	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0.010000	0.542289	
mm_21038.1	chr2	152511612	152511812	-	1	NA	NA	NA	24	NM_001039120	654457	Mm.389363	NM_001039120	ENSMUSG00000074680	Defb26	EG654457	defensin beta 26	protein-coding	0.005000	0.462687	
mm_122729.1	chr14	52316239	52316439	-	1	NA	NA	NA	-16	NM_001244916	50524	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding	0.060000	0.701493	
mm_168583.1	chr11	73469555	73469755	+	1	NA	NA	NA	-15445	NM_147025	259027	Mm.223412	NM_147025	ENSMUSG00000072709	Olfr380	MOR135-1	olfactory receptor 380	protein-coding	0.030000	0.462687	
mm_151513.1	chr19	58736911	58737111	+	1	NA	NA	NA	8124	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.015000	0.522388	
mm_98206.1	chr11	87797337	87797537	+	1	NA	NA	NA	3653	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.060000	0.587065	
mm_48430.1	chr5	140621201	140621401	-	1	NA	NA	NA	13960	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.015000	0.572139	
mm_145706.1	chr18	62744482	62744682	+	1	NA	NA	NA	-3195	NM_001168423	100038417	Mm.387557	NM_001168423	ENSMUSG00000073551	Spink13	ENSMUSG00000073551|Gm10534|Spink5l3	serine peptidase inhibitor, Kazal type 13	protein-coding	0.010000	0.457711	
mm_155081.1	chrX	47912355	47912555	+	1	NA	NA	NA	-1	NM_177215	320634	Mm.210343	NM_177215	ENSMUSG00000001173	Ocrl	9530014D17Rik|BB143339|OCRL1	oculocerebrorenal syndrome of Lowe	protein-coding	0.080000	0.731343	
mm_115842.1	chr13	21287243	21287443	-	1	NA	NA	NA	5343	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.010000	0.492537	8(CCCCCTTAAAGA,-,0.00),9(CCCCTTAAAGAC,+,0.00),11(CCTTAAAGACTG,+,0.00)
mm_58329.1	chr6	146577490	146577690	-	1	NA	NA	NA	245	NM_138757	71177	Mm.271774	NM_138757	ENSMUSG00000040250	Asun	4933424B01Rik|Spata30	asunder, spermatogenesis regulator	protein-coding	0.085000	0.592040	
mm_34148.1	chr4	139363470	139363670	+	1	NA	NA	NA	10983	NM_146157	230866	Mm.394288	NM_146157	ENSMUSG00000078517	Emc1	2700016F22Rik	ER membrane protein complex subunit 1	protein-coding	0.005000	0.507463	
mm_81960.1	chr9	120929146	120929346	+	1	NA	NA	NA	1556	NR_040753	78060	Mm.463884	NR_040753	ENSMUSG00000086365	4930593C16Rik	-	RIKEN cDNA 4930593C16 gene	ncRNA	0.040000	0.502488	
mm_164811.1	chr18	32162892	32163092	+	1	NA	NA	NA	-97	NM_011946	26405	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0.170000	0.741294	
mm_171145.1	chr3	153359956	153360156	-	1	NA	NA	NA	-61407	NR_126464	75489	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0.015000	0.507463	-33(GCTTTAAGACTC,+,0.00)
mm_147173.1	chr18	36726680	36726880	-	1	NA	NA	NA	35	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.030000	0.472637	
mm_146459.1	chr18	86601871	86602071	+	1	NA	NA	NA	-109139	NM_001302356	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.020000	0.547264	
mm_173317.1	chrY	90736234	90736434	+	1	NA	NA	NA	18716	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.462687	
mm_79995.1	chr9	67035895	67036095	+	1	NA	NA	NA	7876	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.025000	0.542289	
mm_145058.1	chr18	40308117	40308317	+	1	NA	NA	NA	49856	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.010000	0.447761	
mm_170799.1	chr2	175469928	175470128	+	1	NA	NA	NA	3	NM_001242944	100503949	Mm.484023	NM_001242944	ENSMUSG00000078896	Zfp965	668009|Gm8923	zinc finger protein 965	protein-coding	0.015000	0.487562	
mm_129557.1	chr15	79529559	79529759	-	1	NA	NA	NA	3258	NM_152806	67040	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.000000	0.477612	
mm_89904.1	chr10	111164745	111164945	+	1	NA	NA	NA	43	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.135000	0.741294	
mm_148775.1	chr19	6106316	6106516	+	1	NA	NA	NA	618	NM_001009546	381204	Mm.359041	NM_001009546	ENSMUSG00000054999	Naaladl1	Gm964|Naaladasel	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding	0.025000	0.572139	
mm_43862.1	chr5	143471021	143471221	+	1	NA	NA	NA	6628	NM_144915	231871	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.015000	0.497512	
mm_122442.1	chr14	45285260	45285460	-	1	NA	NA	NA	33212	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.005000	0.328358	-46(CCTTTTAGAGTT,+,0.00)
mm_16158.1	chr2	172393856	172394056	+	1	NA	NA	NA	162	NM_001276423	320664	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.015000	0.542289	
mm_149063.1	chr19	8840434	8840634	+	1	NA	NA	NA	31	NM_001290823	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.065000	0.631841	
mm_130371.1	chr15	97820904	97821104	-	1	NA	NA	NA	-6141	NM_001204281	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.015000	0.472637	
mm_91318.1	chr10	24959379	24959579	-	1	NA	NA	NA	-32009	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.005000	0.378109	
mm_10066.1	chr1	193510029	193510229	-	1	NA	NA	NA	-2599	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.015000	0.502488	
mm_169066.1	chr1	32685763	32685963	-	1	NA	NA	NA	-138570	NM_001164286	408191	Mm.479439	NM_001164286	ENSMUSG00000091318	Gm5415	EG408191|Senp14	predicted gene 5415	protein-coding	0.030000	0.537313	-38(CCCTTTATAACC,+,0.00)
mm_159107.1	chr2	38784391	38784591	-	1	NA	NA	NA	24	NM_001159548	14536	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	0.040000	0.472637	
mm_144522.1	chr18	25015966	25016166	+	1	NA	NA	NA	149899	NM_001142697	66648	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.015000	0.457711	
mm_71238.1	chr8	40908313	40908513	+	1	NA	NA	NA	-17820	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.025000	0.442786	-97(GTTTTTATGGCT,+,0.00)
mm_150203.1	chr19	32765005	32765205	+	1	NA	NA	NA	7528	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.010000	0.328358	
mm_42819.1	chr5	122061343	122061543	+	1	NA	NA	NA	-11592	NM_001312908	13048	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2|ENSMUSG00000072641	cut-like homeobox 2	protein-coding	0.005000	0.452736	
mm_14034.1	chr2	122152885	122153085	+	1	NA	NA	NA	5298	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.000000	0.388060	
mm_28151.1	chr3	87744168	87744368	-	1	NA	NA	NA	4355	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding	0.010000	0.427861	
mm_155562.1	chrX	75514209	75514409	+	1	NA	NA	NA	12	NM_011692	22327	Mm.8294	NM_011692	ENSMUSG00000031197	Vbp1	VBP-1	von Hippel-Lindau binding protein 1	protein-coding	0.080000	0.552239	
mm_59391.1	chr7	26764293	26764493	+	1	NA	NA	NA	7251	NM_007814	13090	Mm.14098	NM_007814	ENSMUSG00000066704	Cyp2b19	CYPIIB19	cytochrome P450, family 2, subfamily b, polypeptide 19	protein-coding	0.020000	0.552239	
mm_28340.1	chr3	89393215	89393415	-	1	NA	NA	NA	-112	NM_009565	22724	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0.035000	0.691542	
mm_66461.1	chr7	44901194	44901394	-	1	NA	NA	NA	5215	NM_027376	70300	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0.030000	0.606965	
mm_168656.1	chr11	8884072	8884272	+	1	NA	NA	NA	127019	NM_001303610	15574	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	0.020000	0.432836	
mm_3836.1	chr1	160043970	160044170	+	1	NA	NA	NA	-310	NR_028111	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.025000	0.472637	
mm_153291.1	chr19	37353537	37353737	-	1	NA	NA	NA	-22766	NM_010615	16551	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	0.000000	0.492537	
mm_77890.1	chr9	7347307	7347507	+	1	NA	NA	NA	33	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.452736	-34(GGTTATATAAAG,-,0.00),-20(GGGCTTTAAGGG,-,0.00),-18(GCTTTAAGGGAA,+,0.00)
mm_54043.1	chr6	13654044	13654244	-	1	NA	NA	NA	23822	NM_175312	101148	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	0.000000	0.308458	
mm_57126.1	chr6	122600280	122600480	-	1	NA	NA	NA	2064	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.015000	0.472637	
mm_28711.1	chr3	95652302	95652502	-	1	NA	NA	NA	-6319	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.005000	0.542289	
mm_54267.1	chr6	28696465	28696665	-	1	NA	NA	NA	135182	NM_138682	192198	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.000000	0.373134	
mm_49485.1	chr6	29535946	29536146	+	1	NA	NA	NA	6764	NM_001252382	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.030000	0.601990	
mm_151554.1	chr19	59458860	59459060	+	1	NA	NA	NA	270	NM_010132	13797	Mm.245394	NM_010132	ENSMUSG00000043969	Emx2	Pdo	empty spiracles homeobox 2	protein-coding	0.035000	0.557214	
mm_65281.1	chr7	24399789	24399989	-	1	NA	NA	NA	261	NM_028047	71997	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.090000	0.706468	
mm_88974.1	chr10	81453123	81453323	+	1	NA	NA	NA	19908	NM_001311127	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.060000	0.587065	
mm_53074.1	chr6	124934218	124934418	+	1	NA	NA	NA	2930	NM_001170341	30853	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.035000	0.606965	
mm_78335.1	chr9	25255168	25255368	+	1	NA	NA	NA	2829	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.000000	0.442786	
mm_70700.1	chr8	15034063	15034263	+	1	NA	NA	NA	11915	NR_037972	434285	Mm.334425	NM_001007591	ENSMUSG00000049008	BB014433	-	expressed sequence BB014433	ncRNA	0.015000	0.482587	
mm_35655.1	chr4	43556177	43556377	-	1	NA	NA	NA	6306	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.015000	0.522388	
mm_123221.1	chr14	59556976	59557176	-	1	NA	NA	NA	40883	NM_001168537	71891	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0.015000	0.562189	
mm_117256.1	chr13	64367817	64368017	-	1	NA	NA	NA	2603	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.015000	0.532338	
mm_38705.1	chr4	145215323	145215523	-	1	NA	NA	NA	-20418	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.010000	0.517413	
mm_99480.1	chr11	102604674	102604874	+	1	NA	NA	NA	343	NM_020510	57265	Mm.36416	NM_020510	ENSMUSG00000050288	Fzd2	AL033370|AW456835|Fz10|Fzd10|Mfz10|Mfz10a	frizzled class receptor 2	protein-coding	0.090000	0.776119	
mm_161289.1	chr14	26206442	26206642	-	1	NA	NA	NA	-12	NM_001270496	100039257	Mm.33344	NM_001270495	ENSMUSG00000021867	Tmem254b	ENSMUSG00000021867|Gm9746	transmembrane protein 254b	protein-coding	0.065000	0.626866	
mm_25344.1	chr3	106722036	106722236	+	1	NA	NA	NA	454	NM_001286685	321000	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	0.075000	0.582090	
mm_165466.1	chr2	163547171	163547371	+	1	NA	NA	NA	116	NM_008261	15378	Mm.202383	NM_008261	ENSMUSG00000017950	Hnf4a	HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14	hepatic nuclear factor 4, alpha	protein-coding	0.040000	0.681592	
mm_59849.1	chr7	29859910	29860110	+	1	NA	NA	NA	31	NM_172740	233058	Mm.297657	NM_172740	ENSMUSG00000058402	Zfp420	B230119D13|B230312I18Rik|mszf59-1|mszf70	zinc finger protein 420	protein-coding	0.065000	0.611940	
mm_111444.1	chr12	98249249	98249449	-	1	NA	NA	NA	10110	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.015000	0.343284	
mm_123073.1	chr14	55721168	55721368	-	1	NA	NA	NA	908	NM_019519	56187	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0.020000	0.517413	
mm_119654.1	chr14	52110821	52111021	+	1	NA	NA	NA	18	NM_023879	77945	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	0.000000	0.412935	
mm_6353.1	chr1	71652078	71652278	-	1	NA	NA	NA	1056	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.000000	0.343284	
mm_105198.1	chr11	102097224	102097424	-	1	NA	NA	NA	3976	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.040000	0.592040	
mm_101192.1	chr11	18327158	18327358	-	1	NA	NA	NA	231272	NR_131129	327872		NR_131129	ENSMUSG00000085453	Gm12018	OTTMUSG00000005202	predicted gene 12018	ncRNA	0.020000	0.462687	
mm_83218.1	chr9	42124172	42124372	-	1	NA	NA	NA	17	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.190000	0.820896	
mm_46484.1	chr5	105131906	105132106	-	1	NA	NA	NA	7546	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.373134	
mm_26688.1	chr3	156643605	156643805	+	1	NA	NA	NA	81911	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.005000	0.363184	
mm_162275.1	chr1	12992242	12992442	-	1	NA	NA	NA	-1207	NM_172841	240726	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0.120000	0.686567	
mm_71994.1	chr8	70617841	70618041	+	1	NA	NA	NA	1097	NM_153074	211228	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0.020000	0.611940	
mm_95298.1	chr11	46060808	46061008	+	1	NA	NA	NA	4924	NM_001291891	11492	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.015000	0.527363	
mm_128682.1	chr15	60824790	60824990	-	1	NA	NA	NA	190	NM_001162926	399603	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	0.090000	0.661692	-54(CTCTTTAAATGC,-,0.00)
mm_128293.1	chr15	37233212	37233412	-	1	NA	NA	NA	276	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	0.055000	0.552239	
mm_19387.1	chr2	91255940	91256140	-	1	NA	NA	NA	-125	NM_001289677	80708	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	0.040000	0.577114	
mm_27869.1	chr3	79159809	79160009	-	1	NA	NA	NA	-14034	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.005000	0.422886	
mm_58755.1	chr7	13398021	13398221	+	1	NA	NA	NA	-34	NM_013877	29865	Mm.103669	NM_013877	ENSMUSG00000005649	Cabp5	-	calcium binding protein 5	protein-coding	0.000000	0.482587	-35(AGCCATAAATGG,-,0.00)
mm_48757.1	chr5	148329908	148330108	-	1	NA	NA	NA	62807	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.010000	0.462687	
mm_110939.1	chr12	76597306	76597506	-	1	NA	NA	NA	-49481	NR_046044	100504549	Mm.440349	NR_046044		AI463170	-	expressed sequence AI463170	ncRNA	0.005000	0.427861	
mm_169951.1	chr16	78350734	78350934	+	1	NA	NA	NA	25923	NR_002700	654432	Mm.458574	NR_002700	ENSMUSG00000044645	Gm7334	EG654432	B-cell translocation gene 3 pseudogene	pseudo	0.055000	0.636816	
mm_15661.1	chr2	163314396	163314596	+	1	NA	NA	NA	83477	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	0.030000	0.597015	
mm_109207.1	chr12	108676195	108676395	+	1	NA	NA	NA	17675	NR_029771	723909		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.005000	0.507463	
mm_70779.1	chr8	22227240	22227440	+	1	NA	NA	NA	37	NM_001293688	56229	Mm.32067	NM_019576	ENSMUSG00000031480	Thsd1	4833423O18Rik|Tmtsp	thrombospondin, type I, domain 1	protein-coding	0.100000	0.721393	
mm_83299.1	chr9	43239851	43240051	-	1	NA	NA	NA	-135	NM_178644	102644	Mm.246479	NM_178644	ENSMUSG00000032014	Oaf	AL024221|D130038B21Rik|D9Ucla1	out at first homolog	protein-coding	0.060000	0.631841	28(GTCCCTTTAAGG,-,0.00),29(TCCCTTTAAGGG,-,0.00),30(CCCTTTAAGGGC,+,0.00),31(CCTTTAAGGGCC,+,0.00),55(GTCTCTTTAAGG,-,0.00)
mm_98528.1	chr11	94991281	94991481	+	1	NA	NA	NA	169	NM_172261	217124	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.045000	0.562189	-6(TTTTTTAAAGCA,+,0.00)
mm_145338.1	chr18	56432086	56432286	+	1	NA	NA	NA	54	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.105000	0.721393	
mm_44848.1	chr5	34196369	34196569	-	1	NA	NA	NA	-8759	NM_010753	17122	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.015000	0.517413	
mm_91490.1	chr10	37135572	37135772	-	1	NA	NA	NA	3254	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.000000	0.383085	
mm_157828.1	chrX	74243933	74244133	-	1	NA	NA	NA	2501	NM_010227	192176	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	0.010000	0.557214	
mm_24212.1	chr3	88626425	88626625	+	1	NA	NA	NA	5131	NM_001198912	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.025000	0.597015	
mm_84073.1	chr9	58201615	58201815	-	1	NA	NA	NA	0	NM_001161535	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.020000	0.512438	
mm_37608.1	chr4	126753573	126753773	-	1	NA	NA	NA	-97	NM_133886	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.085000	0.681592	
mm_136034.1	chr16	77421498	77421698	-	1	NA	NA	NA	92270	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.030000	0.487562	
mm_97578.1	chr11	78940861	78941061	+	1	NA	NA	NA	15670	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.020000	0.507463	
mm_96328.1	chr11	64800649	64800849	+	1	NA	NA	NA	-178286	NM_023479	68626	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	0.030000	0.517413	
mm_38284.1	chr4	136890189	136890389	-	1	NA	NA	NA	2625	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.040000	0.572139	
mm_166230.1	chr5	66082208	66082408	-	1	NA	NA	NA	15871	NM_139065	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.030000	0.507463	
mm_57875.1	chr6	130337417	130337617	-	1	NA	NA	NA	109	NM_001289605	16634	Mm.425338	NM_010648	ENSMUSG00000067591	Klra3	5E6|Ly49c|NK-2.1|Nk-2|Nk2|Nk2.1	killer cell lectin-like receptor, subfamily A, member 3	protein-coding	0.030000	0.412935	
mm_72771.1	chr8	85840900	85841100	+	1	NA	NA	NA	-2	NM_199446	102093	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding	0.095000	0.701493	
mm_144991.1	chr18	38296629	38296829	+	1	NA	NA	NA	-76	NM_001164621	56736	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	0.095000	0.706468	
mm_99906.1	chr11	109736544	109736744	+	1	NA	NA	NA	-14388	NM_153782	208659	Mm.208662	NM_153782	ENSMUSG00000020614	Fam20a	AI606893	family with sequence similarity 20, member A	protein-coding	0.005000	0.452736	
mm_96997.1	chr11	70702270	70702470	+	1	NA	NA	NA	1822	NM_153103	16562	Mm.99996	NM_153103	ENSMUSG00000020821	Kif1c	B430105J22Rik|D11Bwg1349e|Ltxs1|Orch3	kinesin family member 1C	protein-coding	0.005000	0.552239	
mm_83999.1	chr9	57468897	57469097	-	1	NA	NA	NA	-937	NM_001301635	56807	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	0.015000	0.547264	
mm_49241.1	chr6	17306963	17307163	+	1	NA	NA	NA	-577	NM_001243064	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.040000	0.557214	
mm_11261.1	chr2	29965579	29965779	+	1	NA	NA	NA	119	NM_001309460	20740	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	0.175000	0.746269	-34(GCTTATAAAAGC,+,0.00),-34(GCTTATAAAAGC,-,0.00)
mm_16263.1	chr2	173522503	173522703	+	1	NA	NA	NA	11	NM_028158	72221	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0.075000	0.597015	
mm_16822.1	chr2	11473872	11474072	-	1	NA	NA	NA	28118	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.000000	0.532338	-48(GCTTTTATGCAT,+,0.00)
mm_43046.1	chr5	124075905	124076105	+	1	NA	NA	NA	19793	NM_019875	56325	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.025000	0.542289	
mm_77240.1	chr8	115705126	115705326	-	1	NA	NA	NA	1668	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.005000	0.338308	
mm_139513.1	chr17	56584725	56584925	+	1	NA	NA	NA	-157	NM_001163300	224903	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	0.170000	0.716418	
mm_132741.1	chr16	44123471	44123671	+	1	NA	NA	NA	15448	NM_007508	11964	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.010000	0.437811	
mm_159872.1	chr5	146585123	146585323	-	1	NA	NA	NA	16	NM_001010941	14738	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	0.055000	0.547264	
mm_43027.1	chr5	123914889	123915089	+	1	NA	NA	NA	7714	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.005000	0.482587	77(GACTTTAAAAAG,-,0.00),79(CTTTAAAAAGGA,+,0.00)
mm_57762.1	chr6	129233857	129234057	-	1	NA	NA	NA	4088	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.020000	0.502488	
mm_147417.1	chr18	46161648	46161848	-	1	NA	NA	NA	37070	NM_001170855	28105	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.005000	0.552239	
mm_107924.1	chr12	71074878	71075078	+	1	NA	NA	NA	-36450	NM_029227	75266	Mm.402075	NM_029227	ENSMUSG00000021078	Tomm20l	4930553D19Rik	translocase of outer mitochondrial membrane 20 homolog (yeast)-like	protein-coding	0.020000	0.402985	
mm_55523.1	chr6	70435406	70435606	-	1	NA	NA	NA	356669	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.005000	0.398010	
mm_44274.1	chr5	5694419	5694619	-	1	NA	NA	NA	49	NM_028734	74051	Mm.274956	NM_028734	ENSMUSG00000015653	Steap2	4921538B17Rik|AI930049|AW045895|IPCA-1|IPCA1|PCANAP1|STAMP1|STMP	six transmembrane epithelial antigen of prostate 2	protein-coding	0.050000	0.587065	
mm_65065.1	chr7	18910264	18910464	-	1	NA	NA	NA	40	NM_001033314	232933	Mm.333624	NM_001033314	ENSMUSG00000074358	Ccdc61	C530028I08Rik|Gm159	coiled-coil domain containing 61	protein-coding	0.090000	0.621891	
mm_136058.1	chr16	79090993	79091193	-	1	NA	NA	NA	4	NM_008941	19146	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding	0.015000	0.383085	-39(TCCTTTTAAAGA,-,0.00),-38(CCTTTTAAAGAT,+,0.00)
mm_58199.1	chr6	143162259	143162459	-	1	NA	NA	NA	-4871	NM_029250	75320	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0.040000	0.592040	
mm_147620.1	chr18	57552292	57552492	-	1	NA	NA	NA	3	NR_027944	75084	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0.020000	0.482587	-35(TCTTTTAAGGTC,+,0.00)
mm_164972.1	chr19	7483058	7483258	-	1	NA	NA	NA	133	NM_001271486	20168	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0.075000	0.621891	
mm_95916.1	chr11	58220422	58220622	+	1	NA	NA	NA	5545	NM_019440	54396	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	0.020000	0.452736	
mm_60915.1	chr7	46797735	46797935	+	1	NA	NA	NA	1164	NM_001291075	14884	Mm.22700	NM_008186	ENSMUSG00000006599	Gtf2h1	62kDa|AW743425|AW822074|BTF2 p62|C77871|p62	general transcription factor II H, polypeptide 1	protein-coding	0.005000	0.288557	-1(TGGTTTTTAAGG,-,0.00),1(GTTTTTAAGGAC,+,0.00)
mm_38130.1	chr4	134661487	134661687	-	1	NA	NA	NA	42703	NM_207237	230815	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.015000	0.388060	
mm_106182.1	chr11	116695136	116695336	-	1	NA	NA	NA	-576	NM_009180	20446	Mm.3947	NM_009180	ENSMUSG00000057286	St6galnac2	II|ST6GalNAc|Siat7|Siat7b	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding	0.035000	0.517413	
mm_96511.1	chr11	68468450	68468650	+	1	NA	NA	NA	-34469	NM_001004435	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.020000	0.512438	
mm_24509.1	chr3	92584289	92584489	+	1	NA	NA	NA	4635	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.015000	0.597015	
mm_30404.1	chr3	152253585	152253785	-	1	NA	NA	NA	12635	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.010000	0.402985	
mm_150112.1	chr19	29606121	29606321	+	1	NA	NA	NA	42199	NM_001081213	226090	Mm.267131	NM_146098	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	0.010000	0.492537	
mm_67344.1	chr7	79822257	79822457	-	1	NA	NA	NA	11630	NM_008589	17293	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0.030000	0.552239	
mm_20704.1	chr2	132945780	132945980	-	1	NA	NA	NA	156	NM_198029	241639	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0.015000	0.527363	
mm_94780.1	chr11	21572127	21572327	+	1	NA	NA	NA	-54	NM_145425	216560	Mm.138090	NM_145425	ENSMUSG00000020319	Wdpcp	AV249152	WD repeat containing planar cell polarity effector	protein-coding	0.080000	0.562189	-1(CCTTTTAAAAAC,+,0.00)
mm_101421.1	chr11	29547708	29547908	-	1	NA	NA	NA	-142	NM_028504	73324	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	0.115000	0.626866	
mm_32378.1	chr4	106316031	106316231	+	1	NA	NA	NA	-82	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.145000	0.766169	
mm_24347.1	chr3	89831301	89831501	+	1	NA	NA	NA	31	NM_172530	214547	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.140000	0.771144	
mm_3266.1	chr1	136364960	136365160	+	1	NA	NA	NA	-18956	NM_001347110	67886	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	0.090000	0.696517	
mm_24986.1	chr3	96975296	96975496	+	1	NA	NA	NA	-49345	NM_008123	14616	Mm.258183	NM_008123	ENSMUSG00000049908	Gja8	Aey5|Cnx50|Cx50|Lop10	gap junction protein, alpha 8	protein-coding	0.035000	0.537313	-34(TGCTATATAAGA,-,0.00)
mm_121368.1	chr14	117527388	117527588	+	1	NA	NA	NA	426359	NR_105747	102465148		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0.010000	0.447761	
mm_21750.1	chr2	164828389	164828589	-	1	NA	NA	NA	45	NM_029370	75642	Mm.159541	NM_029370	ENSMUSG00000017767	Spata25	1700020C07Rik|Tsg23	spermatogenesis associated 25	protein-coding	0.015000	0.532338	
mm_53416.1	chr6	133115184	133115384	+	1	NA	NA	NA	10045	NR_073368	381820	Mm.291762	NM_001163445	ENSMUSG00000072704	Smim10l1	2700089E24Rik|AI662692	small integral membrane protein 10 like 1	protein-coding	0.000000	0.432836	
mm_148076.1	chr18	72350951	72351151	-	1	NA	NA	NA	18	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.050000	0.577114	
mm_71566.1	chr8	53605104	53605304	+	1	NA	NA	NA	33861	NM_146208	234258	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0.020000	0.502488	
mm_127010.1	chr15	95830324	95830524	+	1	NA	NA	NA	39581	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.025000	0.537313	
mm_116364.1	chr13	40730690	40730890	-	1	NA	NA	NA	-333	NM_001122948	21418	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.120000	0.646766	
mm_73547.1	chr8	108838958	108839158	+	1	NA	NA	NA	-97802	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.020000	0.368159	
mm_66957.1	chr7	62423151	62423351	-	1	NA	NA	NA	-3112	NM_011746	22652	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	0.000000	0.477612	
mm_10036.1	chr1	192855490	192855690	-	1	NA	NA	NA	162	NM_198247	214791	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	0.135000	0.706468	
mm_130361.1	chr15	97770095	97770295	-	1	NA	NA	NA	-2529	NM_001177811	223864	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.020000	0.537313	
mm_152679.1	chr19	15959103	15959303	-	1	NA	NA	NA	25786	NM_198019	208518	Mm.105652	NM_198019	ENSMUSG00000041491	Cep78	5730599I05Rik|D030027P05	centrosomal protein 78	protein-coding	0.000000	0.263682	
mm_83972.1	chr9	57261409	57261609	-	1	NA	NA	NA	1090	NM_028820	74211	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.050000	0.572139	
mm_7973.1	chr1	134063223	134063423	-	1	NA	NA	NA	15832	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.070000	0.666667	
mm_45133.1	chr5	48813421	48813621	-	1	NA	NA	NA	76036	NM_030265	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.005000	0.293532	
mm_14865.1	chr2	148798760	148798960	+	1	NA	NA	NA	21	NM_009978	13012	Mm.20435	NM_009978	ENSMUSG00000027442	Cst8	Cres|Cst-rs1	cystatin 8 (cystatin-related epididymal spermatogenic)	protein-coding	0.010000	0.537313	
mm_27576.1	chr3	58810461	58810661	-	1	NA	NA	NA	74651	NM_153386	229320	Mm.131502	NM_153384	ENSMUSG00000043850	Clrn1	A130002D11Rik|USH3|Ush3a|clarin-1	clarin 1	protein-coding	0.040000	0.567164	
mm_145722.1	chr18	63757704	63757904	+	1	NA	NA	NA	49109	NM_001014981	104082	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0.000000	0.368159	
mm_56422.1	chr6	97253038	97253238	-	1	NA	NA	NA	-358	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.025000	0.532338	
mm_21857.1	chr2	165884331	165884531	-	1	NA	NA	NA	407	NM_001252584	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.000000	0.442786	
mm_37234.1	chr4	118029119	118029319	-	1	NA	NA	NA	-99456	NM_001284192	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.030000	0.547264	
mm_138498.1	chr17	35200762	35200962	+	1	NA	NA	NA	1145	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.025000	0.507463	75(CCTTTTAGGCTT,+,0.00)
mm_5023.1	chr1	193156689	193156889	+	1	NA	NA	NA	3677	NM_016851	54139	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	0.015000	0.497512	
mm_63016.1	chr7	121032661	121032861	+	1	NA	NA	NA	-1684	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.005000	0.442786	81(CTCTATAAAAAG,-,0.00)
mm_54360.1	chr6	31113378	31113578	-	1	NA	NA	NA	-50385	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.000000	0.253731	
mm_12536.1	chr2	72285697	72285897	+	1	NA	NA	NA	96	NM_178084	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.145000	0.736318	
mm_10459.1	chr2	14294771	14294971	+	1	NA	NA	NA	33868	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.005000	0.393035	
mm_6309.1	chr1	71586836	71587036	-	1	NA	NA	NA	29780	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.025000	0.522388	
mm_133860.1	chr16	96280919	96281119	+	1	NA	NA	NA	-13	NM_033149	93961	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	0.095000	0.701493	
mm_88278.1	chr10	75060736	75060936	+	1	NA	NA	NA	-60	NM_001081412	110279	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.170000	0.820896	
mm_90848.1	chr10	8762201	8762401	-	1	NA	NA	NA	123769	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.025000	0.522388	
mm_10345.1	chr2	11666310	11666510	+	1	NA	NA	NA	23618	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.020000	0.432836	-99(CCTTATAGGGAA,+,0.00)
mm_132331.1	chr16	33819083	33819283	+	1	NA	NA	NA	-10482	NM_010580	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.005000	0.507463	
mm_139295.1	chr17	48316102	48316302	+	1	NA	NA	NA	40	NM_177083	320148	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.005000	0.547264	
mm_49664.1	chr6	31220254	31220454	+	1	NA	NA	NA	3	NR_040261	73652	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.065000	0.666667	
mm_32866.1	chr4	118429586	118429786	+	1	NA	NA	NA	-15	NM_001039176	54325	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	0.025000	0.631841	
mm_40643.1	chr5	64961336	64961536	+	1	NA	NA	NA	-1402	NM_011604	21899	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0.010000	0.437811	
mm_167105.1	chr7	111692733	111692933	-	1	NA	NA	NA	87144	NM_173739	233733	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	0.020000	0.537313	
mm_87122.1	chr10	33359228	33359428	+	1	NA	NA	NA	-102971	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.000000	0.288557	
mm_61046.1	chr7	49778346	49778546	+	1	NA	NA	NA	88	NM_133740	71974	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	0.180000	0.771144	
mm_148607.1	chr19	5327909	5328109	+	1	NA	NA	NA	-7732	NM_139301	225865	Mm.87321	NM_139301	ENSMUSG00000038498	Catsper1	Catsper|KSper	cation channel, sperm associated 1	protein-coding	0.070000	0.572139	
mm_86347.1	chr9	123632286	123632486	-	1	NA	NA	NA	179	NM_011731	22599	Mm.41963	NM_011731	ENSMUSG00000025243	Slc6a20b	AA986306|Sit1|Slc6a20|XT3|Xtrp3	solute carrier family 6 (neurotransmitter transporter), member 20B	protein-coding	0.025000	0.562189	
mm_43707.1	chr5	139354151	139354351	+	1	NA	NA	NA	1634	NM_001160265	545817	Mm.482474	NM_001160265	ENSMUSG00000029541	Cyp2w1	Gm455	cytochrome P450, family 2, subfamily w, polypeptide 1	protein-coding	0.035000	0.621891	
mm_152725.1	chr19	18631651	18631851	-	1	NA	NA	NA	62	NM_017375	20409	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.135000	0.731343	
mm_112722.1	chr13	19192118	19192318	+	1	NA	NA	NA	203595	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.507463	
mm_8936.1	chr1	164307373	164307573	-	1	NA	NA	NA	11	NM_001160209	66352	Mm.33285	NM_025505	ENSMUSG00000026577	Blzf1	1700030G05Rik|Blzf1l|Golgin-45|Jem-1	basic leucine zipper nuclear factor 1	protein-coding	0.070000	0.497512	
mm_10499.1	chr2	15055227	15055427	+	1	NA	NA	NA	-35	NM_029466	75869	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	0.110000	0.721393	
mm_93565.1	chr10	116545721	116545921	-	1	NA	NA	NA	35690	NM_001037848	72068	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.005000	0.278607	
mm_86401.1	chr9	123978198	123978398	-	1	NA	NA	NA	110	NM_007718	12770	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0.010000	0.482587	
mm_37397.1	chr4	121109089	121109289	-	1	NA	NA	NA	37	NM_001081312	69469	Mm.481120	NM_001081312	ENSMUSG00000078577	Tmco2	1700028F16Rik	transmembrane and coiled-coil domains 2	protein-coding	0.015000	0.452736	
mm_23362.1	chr3	55242516	55242716	+	1	NA	NA	NA	90	NM_001195538	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.085000	0.656716	
mm_44642.1	chr5	28165369	28165569	-	1	NA	NA	NA	-227	NM_010134	13799	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	0.070000	0.646766	-55(CCCCTTTAAAGT,-,0.00),-54(CCCTTTAAAGTG,+,0.00),-53(CCTTTAAAGTGG,+,0.00)
mm_61974.1	chr7	90519439	90519639	+	1	NA	NA	NA	-43544	NM_026734	68472	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	0.010000	0.303483	
mm_96769.1	chr11	69935599	69935799	+	1	NA	NA	NA	-200	NM_016875	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.110000	0.721393	
mm_131843.1	chr16	22961198	22961398	+	1	NA	NA	NA	10226	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.020000	0.507463	
mm_160508.1	chr9	20300320	20300520	+	1	NA	NA	NA	209	NM_146561	258554	Mm.334991	NM_146561	ENSMUSG00000049028	Olfr873	MOR145-2	olfactory receptor 873	protein-coding	0.005000	0.442786	
mm_154989.1	chrX	38316057	38316257	+	1	NA	NA	NA	35	NM_133690	67821	Mm.60134	NM_133690	ENSMUSG00000016327	Atp1b4	1110020B02Rik	ATPase, (Na+)/K+ transporting, beta 4 polypeptide	protein-coding	0.020000	0.532338	
mm_37494.1	chr4	123664665	123664865	-	1	NA	NA	NA	-1116	NR_136925	102633214	Mm.399387	NR_136925		Gm12925	OTTMUSG00000009214	predicted gene 12925	ncRNA	0.170000	0.786070	
mm_154480.1	chrM	4319	4519	-	1	NA	NA	NA	NA	NA									0.010000	0.348259	
mm_19172.1	chr2	84345127	84345327	-	1	NA	NA	NA	80039	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.010000	0.393035	
mm_117606.1	chr13	90886659	90886859	-	1	NA	NA	NA	18596	NM_001145879	435376	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	0.040000	0.378109	70(CGGTATATATGC,-,0.00)
mm_88268.1	chr10	74547776	74547976	+	1	NA	NA	NA	-419355	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	0.010000	0.477612	
mm_89768.1	chr10	100098483	100098683	+	1	NA	NA	NA	82762	NM_013598	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.000000	0.353234	
mm_37481.1	chr4	123572772	123572972	-	1	NA	NA	NA	-43548	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.025000	0.542289	
mm_1484.1	chr1	71642906	71643106	+	1	NA	NA	NA	10228	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.035000	0.587065	
mm_32014.1	chr4	94739476	94739676	+	1	NA	NA	NA	287	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	0.040000	0.527363	
mm_93269.1	chr10	95767978	95768178	-	1	NA	NA	NA	-172585	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.010000	0.532338	
mm_23466.1	chr3	60475320	60475520	+	1	NA	NA	NA	2590	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.000000	0.353234	30(CACTTTAAAAAA,-,0.00)
mm_75852.1	chr8	70659731	70659931	-	1	NA	NA	NA	-93	NM_023217	66522	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0.090000	0.711443	
mm_16090.1	chr2	168956144	168956344	+	1	NA	NA	NA	-657	NM_009564	22722	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	0.035000	0.492537	-70(CGCCTTTTAGGG,-,0.00),-68(CCTTTTAGGGAC,+,0.00)
mm_86773.1	chr10	20141785	20141985	+	1	NA	NA	NA	-7035	NM_008635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.030000	0.402985	
mm_49309.1	chr6	18169724	18169924	+	1	NA	NA	NA	-863	NM_021050	12638	Mm.15621	NM_021050	ENSMUSG00000041301	Cftr	AW495489|Abcc7	cystic fibrosis transmembrane conductance regulator	protein-coding	0.000000	0.432836	
mm_24093.1	chr3	88030745	88030945	+	1	NA	NA	NA	-3334	NM_022031	73940	Mm.294467	NM_022031	ENSMUSG00000004894	Hapln2	4930401E20Rik|Bral1	hyaluronan and proteoglycan link protein 2	protein-coding	0.035000	0.577114	
mm_91675.1	chr10	43373852	43374052	-	1	NA	NA	NA	-105188	NM_199028	331623	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.045000	0.502488	
mm_80892.1	chr9	99612451	99612651	+	1	NA	NA	NA	49	NM_001077424	333424	Mm.297753	NM_001077424	ENSMUSG00000037953	A4gnt	AV080780|Alpha4gnt|Gm798	alpha-1,4-N-acetylglucosaminyltransferase	protein-coding	0.000000	0.388060	
mm_79109.1	chr9	46268977	46269177	+	1	NA	NA	NA	469	NM_080434	66113	Mm.29738	NM_080434	ENSMUSG00000032079	Apoa5	1300007O05Rik|Apoav|RAP3	apolipoprotein A-V	protein-coding	0.020000	0.587065	
mm_44460.1	chr5	22550156	22550356	-	1	NA	NA	NA	75	NM_011959	26429	Mm.412217	NM_011959	ENSMUSG00000029012	Orc5	AL033327|MmORC5|Orc5l	origin recognition complex, subunit 5	protein-coding	0.035000	0.562189	
mm_80174.1	chr9	72274780	72274980	+	1	NA	NA	NA	-8	NM_146224	235469	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	0.135000	0.761194	
mm_53670.1	chr6	141671784	141671984	+	1	NA	NA	NA	42366	NM_020495	28253	Mm.272223	NM_020495	ENSMUSG00000030236	Slco1b2	7330442B20Rik|OATP-C|OATP2|Oatp1b2|Oatp4|Slc21a10|Slc21a6|lst-1|mlst-1	solute carrier organic anion transporter family, member 1b2	protein-coding	0.010000	0.393035	
mm_145104.1	chr18	44104378	44104578	+	1	NA	NA	NA	-45	NM_030061	78242	Mm.99782	NM_030061	ENSMUSG00000061144	Spink12	9230117E20Rik	serine peptidase inhibitor, Kazal type 12	protein-coding	0.005000	0.353234	
mm_172756.1	chr8	85607113	85607313	-	1	NA	NA	NA	-51942	NM_019794	56445	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0.005000	0.492537	
mm_10538.1	chr2	16457242	16457442	+	1	NA	NA	NA	101038	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.010000	0.437811	
mm_150567.1	chr19	40089548	40089748	+	1	NA	NA	NA	-31	NM_134144	107141	Mm.474575	NM_134144	ENSMUSG00000054827	Cyp2c50	AI266900	cytochrome P450, family 2, subfamily c, polypeptide 50	protein-coding	0.000000	0.407960	
mm_133607.1	chr16	91489601	91489801	+	1	NA	NA	NA	4486	NM_010508	15975	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	CD118|Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.010000	0.358209	
mm_50089.1	chr6	41523921	41524121	+	1	NA	NA	NA	2245	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.547264	
mm_86599.1	chr10	13499441	13499641	+	1	NA	NA	NA	-1487	NM_001330198	66848	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0.005000	0.502488	76(GCCCTGAAAAGC,-,0.00)
mm_131440.1	chr16	16072687	16072887	+	1	NA	NA	NA	74064	NM_146068	224008	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0.010000	0.502488	
mm_4979.1	chr1	191575657	191575857	+	1	NA	NA	NA	121	NM_001306204	77065	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	0.110000	0.661692	
mm_122542.1	chr14	47568332	47568532	-	1	NA	NA	NA	2	NM_172599	100504663	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	0.065000	0.651741	
mm_3027.1	chr1	133664354	133664554	+	1	NA	NA	NA	-3055	NM_144530	70579	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	0.005000	0.457711	
mm_34510.1	chr4	148853437	148853637	+	1	NA	NA	NA	49145	NM_027195	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.030000	0.437811	
mm_73002.1	chr8	93810711	93810911	+	1	NA	NA	NA	-27	NM_010308	14681	Mm.251445	NM_010308	ENSMUSG00000031748	Gnao1	AW050213|Galphao|Gnao|alphaO	guanine nucleotide binding protein, alpha O	protein-coding	0.125000	0.766169	
mm_47552.1	chr5	124354667	124354867	-	1	NA	NA	NA	-139	NM_013812	13445	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0.150000	0.761194	
mm_122055.1	chr14	30277929	30278129	-	1	NA	NA	NA	75457	NM_001302637	12289	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.005000	0.273632	
mm_60882.1	chr7	46376354	46376554	+	1	NA	NA	NA	-20	NM_010866	17927	Mm.1526	NM_010866	ENSMUSG00000009471	Myod1	AI503393|MYF3|MyoD|Myod-1|bHLHc1	myogenic differentiation 1	protein-coding	0.045000	0.636816	
mm_76999.1	chr8	107293103	107293303	-	1	NA	NA	NA	-267	NM_018823	54446	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0.040000	0.616915	
mm_137611.1	chr17	28252460	28252660	+	1	NA	NA	NA	-19148	NR_045427	69050	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0.025000	0.636816	
mm_47004.1	chr5	115436420	115436620	-	1	NA	NA	NA	6835	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.065000	0.686567	
mm_41574.1	chr5	93172671	93172871	+	1	NA	NA	NA	33724	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.020000	0.452736	
mm_137799.1	chr17	29717031	29717231	+	1	NA	NA	NA	-114	NM_001163741	68597	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	0.060000	0.557214	
mm_31938.1	chr4	86575689	86575889	+	1	NA	NA	NA	116	NM_178376	68441	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	0.115000	0.686567	
mm_157319.1	chrX	21680480	21680680	-	1	NA	NA	NA	-34320	NM_020049	56774	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	0.015000	0.368159	
mm_85543.1	chr9	106682143	106682343	-	1	NA	NA	NA	3573	NM_011573	21767	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.000000	0.542289	
mm_159957.1	chr6	87914075	87914275	+	1	NA	NA	NA	199	NM_173737	232210	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	0.145000	0.766169	
mm_125598.1	chr15	59650641	59650841	+	1	NA	NA	NA	2087	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.030000	0.532338	-22(GGCCCTTAAAGA,-,0.00),-21(GCCCTTAAAGAG,-,0.00),-19(CCTTAAAGAGAC,+,0.00)
mm_138345.1	chr17	34914368	34914568	+	1	NA	NA	NA	2	NM_023557	70129	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22	solute carrier family 44, member 4	protein-coding	0.060000	0.661692	
mm_50375.1	chr6	48682423	48682623	+	1	NA	NA	NA	-2055	NM_001243200	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.015000	0.457711	44(GGGCTTATAAAC,-,0.00),46(GCTTATAAACTG,+,0.00)
mm_47703.1	chr5	129878966	129879166	-	1	NA	NA	NA	17	NM_011079	18682	Mm.3159	NM_011079	ENSMUSG00000025537	Phkg1	Phkg	phosphorylase kinase gamma 1	protein-coding	0.005000	0.527363	
mm_110654.1	chr12	59053760	59053960	-	1	NA	NA	NA	7612	NM_001306218	78232	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	0.000000	0.333333	
mm_65986.1	chr7	30524324	30524524	-	1	NA	NA	NA	9302	NR_036630	100504207	Mm.297831	NM_001004161	ENSMUSG00000062132	Arhgap33os	Gm1082	Rho GTPase activating protein 33, opposite strand	ncRNA	0.025000	0.592040	
mm_44277.1	chr5	5749229	5749429	-	1	NA	NA	NA	-12	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.135000	0.751244	
mm_92737.1	chr10	80918096	80918296	-	1	NA	NA	NA	49	NM_010722	16907	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0.170000	0.731343	
mm_75741.1	chr8	69749854	69750054	-	1	NA	NA	NA	8	NM_001200023	620419	Mm.460423	NM_001200023	ENSMUSG00000092260	Zfp963	-	zinc finger protein 963	protein-coding	0.065000	0.626866	
mm_50912.1	chr6	57582714	57582914	+	1	NA	NA	NA	1822	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.000000	0.328358	
mm_28497.1	chr3	92484512	92484712	-	1	NA	NA	NA	1269	NM_009264	20753	Mm.331191	NM_009264	ENSMUSG00000050359	Sprr1a	AI528815|SPR1a|mSPRR1A	small proline-rich protein 1A	protein-coding	0.000000	0.621891	
mm_163294.1	chr11	118992844	118993044	+	1	NA	NA	NA	4756	NM_001030291	238011	Mm.244114	NM_001030291	ENSMUSG00000046697	Enpp7	Alk-SMase|Gm254	ectonucleotide pyrophosphatase/phosphodiesterase 7	protein-coding	0.010000	0.597015	
mm_92134.1	chr10	66697992	66698192	-	1	NA	NA	NA	222292	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.035000	0.547264	
mm_66397.1	chr7	44304782	44304982	-	1	NA	NA	NA	2077	NM_009131	20256	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	0.105000	0.676617	
mm_32817.1	chr4	117367625	117367825	+	1	NA	NA	NA	7736	NM_001310729	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.050000	0.557214	3(GAACTTAAAAGC,-,0.00)
mm_12774.1	chr2	79327482	79327682	+	1	NA	NA	NA	72156	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.010000	0.407960	36(CTTTTTTAAAGG,-,0.00),37(TTTTTTAAAGGA,+,0.00)
mm_125854.1	chr15	74989518	74989718	+	1	NA	NA	NA	-6188	NM_020498	57248	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	0.005000	0.477612	
mm_166570.1	chr6	48988559	48988759	+	1	NA	NA	NA	1798	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.015000	0.487562	
mm_6326.1	chr1	71612413	71612613	-	1	NA	NA	NA	40721	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.065000	0.552239	
mm_113313.1	chr13	30761567	30761767	+	1	NA	NA	NA	12434	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.010000	0.487562	
mm_6939.1	chr1	85726992	85727192	-	1	NA	NA	NA	9514	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.000000	0.333333	-11(AGCTTTTTAAAG,-,0.00),-10(GCTTTTTAAAGC,-,0.00),-9(CTTTTTAAAGCA,+,0.00)
mm_108991.1	chr12	102899159	102899359	+	1	NA	NA	NA	-47	NM_001039049	75483	Mm.660	NM_001039049	ENSMUSG00000043319	Cox8c	1700007F21Rik|COX8-3|COXVIII-3	cytochrome c oxidase subunit VIIIc	protein-coding	0.045000	0.562189	
mm_94924.1	chr11	29508507	29508707	+	1	NA	NA	NA	6426	NM_026465	67939	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0.005000	0.228856	
mm_163224.1	chr11	102097396	102097596	+	1	NA	NA	NA	3804	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.040000	0.527363	
mm_85617.1	chr9	107614602	107614802	-	1	NA	NA	NA	-5461	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.025000	0.567164	
mm_171591.1	chr4	147642412	147642612	-	1	NA	NA	NA	-4	NM_145078	112422	Mm.327194	NM_145078	ENSMUSG00000066000	Zfp979	2610305D13Rik|Ssm1b	zinc finger protein 979	protein-coding	0.030000	0.527363	
mm_102727.1	chr11	67242736	67242936	-	1	NA	NA	NA	5024	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.020000	0.462687	
mm_46067.1	chr5	92278120	92278320	-	1	NA	NA	NA	-39	NM_025972	67111	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	0.045000	0.651741	
mm_137249.1	chr17	24528154	24528354	+	1	NA	NA	NA	3	NR_045289	75614	Mm.440235	NR_045289	ENSMUSG00000093565	Rab26os	2610019E17Rik	RAB26, member RAS oncogene family, opposite strand	ncRNA	0.035000	0.512438	
mm_118256.1	chr13	112424618	112424818	-	1	NA	NA	NA	-39352	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.030000	0.477612	
mm_109169.1	chr12	108334274	108334474	+	1	NA	NA	NA	-7	NM_010010	13116	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	0.145000	0.796020	
mm_15003.1	chr2	152476935	152477135	+	1	NA	NA	NA	-28	NM_176950	319579	Mm.190454	NM_176950	ENSMUSG00000049560	Defb20	9230107O10Rik|BD-20|mBD-20	defensin beta 20	protein-coding	0.010000	0.517413	
mm_94963.1	chr11	30786618	30786818	+	1	NA	NA	NA	14943	NM_134013	103554	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	0.005000	0.402985	-6(TTTTTTAAAGGA,+,0.00)
mm_101438.1	chr11	30138735	30138935	-	1	NA	NA	NA	59422	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.020000	0.527363	
mm_60170.1	chr7	40902528	40902728	+	1	NA	NA	NA	3350	NM_021387	58188	Mm.150675	NM_021387	ENSMUSG00000039257	Vstm2b	2900093B09Rik|AB030198	V-set and transmembrane domain containing 2B	protein-coding	0.080000	0.631841	
mm_40823.1	chr5	72647690	72647890	+	1	NA	NA	NA	-6	NM_001081205	70701	Mm.38884	NM_001081205	ENSMUSG00000067219	Nipal1	3830408G10Rik|Npal1	NIPA-like domain containing 1	protein-coding	0.070000	0.641791	
mm_134855.1	chr16	28323460	28323660	-	1	NA	NA	NA	122515	NM_183064	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.005000	0.358209	
mm_74038.1	chr8	121907752	121907952	+	1	NA	NA	NA	19	NM_001033485	407789	Mm.436576	NM_001033485		BC048644	-	cDNA sequence BC048644	protein-coding	0.095000	0.601990	
mm_31259.1	chr4	45130349	45130549	+	1	NA	NA	NA	-22336	NM_001099675	68512	Mm.282081	NM_001099675	ENSMUSG00000078713	Tomm5	1110019J04Rik|Tom5	translocase of outer mitochondrial membrane 5 homolog (yeast)	protein-coding	0.025000	0.457711	
mm_90667.1	chr10	128821800	128822000	+	1	NA	NA	NA	129	NM_025364	66118	Mm.235562	NM_025364	ENSMUSG00000078427	Sarnp	1110005A23Rik|Cip29	SAP domain containing ribonucleoprotein	protein-coding	0.080000	0.641791	
mm_17618.1	chr2	30967725	30967925	-	1	NA	NA	NA	93	NM_144884	30931	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0.110000	0.706468	
mm_146421.1	chr18	84720780	84720980	+	1	NA	NA	NA	638	NM_173770	240479	Mm.472378	NM_173770	ENSMUSG00000047992	Fam69c	B230399E16Rik	family with sequence similarity 69, member C	protein-coding	0.025000	0.542289	
mm_80023.1	chr9	67996431	67996631	+	1	NA	NA	NA	29183	NR_045745	434412	Mm.490707	NR_045745	ENSMUSG00000111841	Gm20745	-	predicted gene, 20745	ncRNA	0.015000	0.477612	
mm_45994.1	chr5	90506503	90506703	-	1	NA	NA	NA	-12346	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.010000	0.447761	
mm_121134.1	chr14	101883986	101884186	+	1	NA	NA	NA	43463	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.020000	0.497512	
mm_159871.1	chr5	146231460	146231660	+	1	NA	NA	NA	-115	NM_153599	264064	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.165000	0.835821	
mm_171852.1	chr5	16941231	16941431	+	1	NA	NA	NA	387430	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.050000	0.636816	
mm_126647.1	chr15	84123017	84123217	+	1	NA	NA	NA	58	NM_029427	75772	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0.025000	0.597015	
mm_89779.1	chr10	100820795	100820995	+	1	NA	NA	NA	228509	NM_001081246	66605	Mm.72646	NM_001081246	ENSMUSG00000056912	1700017N19Rik	-	RIKEN cDNA 1700017N19 gene	protein-coding	0.005000	0.447761	
mm_84113.1	chr9	58370355	58370555	-	1	NA	NA	NA	-49	NR_040727	73529	Mm.490924	NR_040727	ENSMUSG00000100487	1700072B07Rik	-	RIKEN cDNA 1700072B07 gene	ncRNA	0.000000	0.487562	41(TCTCTTAAAAGG,-,0.00)
mm_11569.1	chr2	32897780	32897980	+	1	NA	NA	NA	21746	NM_146119	227737	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.010000	0.552239	
mm_53407.1	chr6	132439441	132439641	+	1	NA	NA	NA	-75406	NM_053251	114600	Mm.428480	NM_053251		Gm4736	EG114600|Mp4|Mp6	predicted gene 4736	protein-coding	0.000000	0.671642	
mm_12144.1	chr2	61804542	61804742	+	1	NA	NA	NA	189	NM_009322	21375	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.010000	0.462687	19(ACTTTAAAACCC,+,0.00)
mm_52347.1	chr6	110946868	110947068	+	1	NA	NA	NA	301370	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.000000	0.422886	
mm_125465.1	chr15	52712387	52712587	+	1	NA	NA	NA	42	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.155000	0.751244	
mm_12809.1	chr2	80302230	80302430	+	1	NA	NA	NA	9860	NM_177256	320769	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	0.000000	0.378109	
mm_257.1	chr1	20669974	20670174	+	1	NA	NA	NA	192	NR_131249	105661730	Mm.137893	NR_131249		Linc-md1	-	long intergenic non-coding RNA muscle differentiation 1	ncRNA	0.015000	0.537313	-93(GTCCTTAAAAGA,-,0.00),-92(TCCTTAAAAGAC,+,0.00)
mm_29555.1	chr3	116807809	116808009	-	1	NA	NA	NA	257	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.060000	0.572139	
mm_104829.1	chr11	99089207	99089407	-	1	NA	NA	NA	-1	NM_172564	217169	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	0.040000	0.577114	
mm_51448.1	chr6	80314356	80314556	+	1	NA	NA	NA	294813	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.000000	0.442786	
mm_136864.1	chr17	12858965	12859165	+	1	NA	NA	NA	9078	NM_008552	17171	Mm.425994	NM_008552	ENSMUSG00000068037	Mas1	Mas-1|Mgra	MAS1 oncogene	protein-coding	0.005000	0.537313	
mm_120698.1	chr14	70890586	70890786	+	1	NA	NA	NA	579	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.070000	0.597015	
mm_34015.1	chr4	137993969	137994169	+	1	NA	NA	NA	613	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.130000	0.736318	
mm_73506.1	chr8	107344337	107344537	+	1	NA	NA	NA	50967	NM_133957	54446	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0.000000	0.238806	
mm_30374.1	chr3	152209923	152210123	-	1	NA	NA	NA	60	NM_027287	67035	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0.150000	0.761194	
mm_3206.1	chr1	135818843	135819043	+	1	NA	NA	NA	345	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding	0.120000	0.741294	
mm_120901.1	chr14	75954957	75955157	+	1	NA	NA	NA	54	NM_026214	67516	Mm.390712	NM_026214	ENSMUSG00000046523	Kctd4	2210017A09Rik|AU017169	potassium channel tetramerisation domain containing 4	protein-coding	0.020000	0.437811	
mm_102105.1	chr11	53255534	53255734	-	1	NA	NA	NA	44845	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.010000	0.412935	
mm_21510.1	chr2	163625019	163625219	-	1	NA	NA	NA	17907	NM_001305803	76080	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.000000	0.293532	-15(TTCTTTATAAAG,-,0.00),-13(CTTTATAAAGAC,+,0.00),47(GGATATTTAAGG,-,0.00),82(CTCCTTAAAAAC,-,0.00),84(CCTTAAAAACCA,+,0.00)
mm_116921.1	chr13	55529254	55529454	-	1	NA	NA	NA	-816	NM_013739	27261	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	0.005000	0.572139	-63(ACCCTTTAAAGC,-,0.00),-62(CCCTTTAAAGCA,+,0.00)
mm_112050.1	chr12	111712852	111713052	-	1	NA	NA	NA	1	NM_001324481	70369	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.180000	0.825871	
mm_502.1	chr1	37029252	37029452	+	1	NA	NA	NA	-89825	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.055000	0.641791	
mm_74284.1	chr8	125685523	125685723	+	1	NA	NA	NA	15805	NM_028908	74393	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0.015000	0.482587	
mm_10050.1	chr1	193201048	193201248	-	1	NA	NA	NA	398	NM_153137	215243	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	0.025000	0.547264	
mm_86614.1	chr10	13965169	13965369	+	1	NA	NA	NA	-1110	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.060000	0.587065	
mm_130871.1	chr15	102224398	102224598	-	1	NA	NA	NA	7437	NM_013566	16421	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0.070000	0.641791	
mm_43019.1	chr5	123907467	123907667	+	1	NA	NA	NA	292	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.055000	0.656716	
mm_92437.1	chr10	77201106	77201306	-	1	NA	NA	NA	-34676	NM_009929	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.000000	0.582090	
mm_68677.1	chr7	118983954	118984154	-	1	NA	NA	NA	11157	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.040000	0.597015	
mm_29318.1	chr3	108017336	108017536	-	1	NA	NA	NA	537	NM_010358	14862	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	0.035000	0.527363	
mm_23306.1	chr3	52736360	52736560	+	1	NA	NA	NA	-3264	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	0.015000	0.512438	
mm_4318.1	chr1	171849737	171849937	+	1	NA	NA	NA	10140	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.427861	
mm_8756.1	chr1	160351799	160351999	-	1	NA	NA	NA	-328	NM_001038621	29809	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0.040000	0.572139	
mm_108368.1	chr12	80816592	80816792	+	1	NA	NA	NA	26160	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.000000	0.477612	49(CTCTTTATGAGC,-,0.00)
mm_63013.1	chr7	120982434	120982634	+	1	NA	NA	NA	25	NM_028955	74466	Mm.189707	NM_028955	ENSMUSG00000030877	Mfsd13b	4933427G17Rik	major facilitator superfamily domain containing 13B	protein-coding	0.065000	0.577114	
mm_113727.1	chr13	43804831	43805031	+	1	NA	NA	NA	19819	NM_001289915	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.005000	0.437811	
mm_143663.1	chr17	79714977	79715177	-	1	NA	NA	NA	-36	NM_009994	13078	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0.060000	0.587065	
mm_53329.1	chr6	129230497	129230697	+	1	NA	NA	NA	7448	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.000000	0.432836	
mm_154483.1	chrM	4499	4699	-	1	NA	NA	NA	NA	NA									0.000000	0.358209	
mm_52751.1	chr6	120666306	120666506	+	1	NA	NA	NA	-15	NM_001128151	330409	Mm.333357	NM_001128151	ENSMUSG00000071226	Cecr2	2610101O16Rik|2810409N01Rik|Gtl4|mKIAA1740	cat eye syndrome chromosome region, candidate 2	protein-coding	0.165000	0.766169	
mm_55963.1	chr6	85502907	85503107	-	1	NA	NA	NA	-13	NM_001289675	330369	Mm.38777	NM_001001160	ENSMUSG00000047013	Fbxo41	9630017H13|D6Ertd538e	F-box protein 41	protein-coding	0.100000	0.751244	
mm_54116.1	chr6	18030267	18030467	-	1	NA	NA	NA	78	NM_023653	22413	Mm.33653	NM_023653	ENSMUSG00000010797	Wnt2	2610510E18Rik|Int1l1|Irp|Mirp|Wnt-2|Wnt2a	wingless-type MMTV integration site family, member 2	protein-coding	0.110000	0.651741	
mm_168138.1	chr10	30215908	30216108	+	1	NA	NA	NA	-15468	NM_001109747	66311	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding	0.025000	0.462687	
mm_110465.1	chr12	51802539	51802739	-	1	NA	NA	NA	26897	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.025000	0.522388	
mm_92923.1	chr10	84440527	84440727	-	1	NA	NA	NA	-156	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.145000	0.761194	
mm_63312.1	chr7	126862557	126862757	+	1	NA	NA	NA	685	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	0.055000	0.552239	
mm_131770.1	chr16	22894160	22894360	+	1	NA	NA	NA	126	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.025000	0.597015	
mm_131865.1	chr16	23146501	23146701	+	1	NA	NA	NA	65	NM_009605	11450	Mm.3969	NM_009605	ENSMUSG00000022878	Adipoq	30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1	adiponectin, C1Q and collagen domain containing	protein-coding	0.015000	0.497512	
mm_25161.1	chr3	103056891	103057091	+	1	NA	NA	NA	-1294	NM_010937	18176	Mm.400954	NM_010937	ENSMUSG00000027852	Nras	AV095280|N-ras	neuroblastoma ras oncogene	protein-coding	0.020000	0.412935	
mm_22239.1	chr2	174463945	174464145	-	1	NA	NA	NA	56	NM_025983	67126	Mm.20841	NM_025983	ENSMUSG00000016252	Atp5e	2410043G19Rik|ATPE|AV000645	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	protein-coding	0.090000	0.666667	
mm_139994.1	chr17	72921064	72921264	+	1	NA	NA	NA	2859	NM_029999	77889	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.035000	0.562189	
mm_114367.1	chr13	62263519	62263719	+	1	NA	NA	NA	119555	NM_001162910	100041979	Mm.445930	NM_001162910	ENSMUSG00000094942	Gm3604	-	predicted gene 3604	protein-coding	0.010000	0.492537	
mm_12548.1	chr2	72405158	72405358	+	1	NA	NA	NA	-70961	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.025000	0.462687	
mm_152434.1	chr19	10719324	10719524	-	1	NA	NA	NA	19550	NM_007650	12507	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	0.000000	0.522388	
mm_113981.1	chr13	52180164	52180364	+	1	NA	NA	NA	83523	NR_045061	74050	Mm.84860	NR_045061		4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.010000	0.467662	
mm_111432.1	chr12	91788238	91788438	-	1	NA	NA	NA	-1902	NM_175367	108800	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.030000	0.512438	
mm_146433.1	chr18	84877724	84877924	+	1	NA	NA	NA	26410	NM_025797	109672	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.015000	0.412935	
mm_28349.1	chr3	89458664	89458864	-	1	NA	NA	NA	-354	NM_026784	68603	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0.020000	0.407960	-25(CTGTTGAAAAGG,-,0.00)
mm_56017.1	chr6	86526076	86526276	-	1	NA	NA	NA	-11	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.150000	0.741294	
mm_144851.1	chr18	36638480	36638680	+	1	NA	NA	NA	-25480	NM_201256	108112	Mm.24790	NM_201256	ENSMUSG00000090264	Eif4ebp3	4e-bp3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding	0.010000	0.393035	
mm_98118.1	chr11	87126979	87127179	+	1	NA	NA	NA	4	NM_197987	68729	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.165000	0.756219	
mm_118874.1	chr14	25857514	25857714	+	1	NA	NA	NA	15459	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.010000	0.567164	
mm_168658.1	chr11	88890219	88890419	-	1	NA	NA	NA	-15609	NR_045955	73921	Mm.439148	NR_045955	ENSMUSG00000087338	Scpep1os	4930405P13Rik	serine carboxypeptidase 1, opposite strand	ncRNA	0.075000	0.557214	-36(CCCTATAAAAAG,-,0.00)
mm_87407.1	chr10	45807464	45807664	+	1	NA	NA	NA	-140	NR_040624	320363	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	0.020000	0.482587	
mm_61532.1	chr7	79053125	79053325	+	1	NA	NA	NA	98	NR_132432	102633600	Mm.382916	NR_132432	ENSMUSG00000097441	Gm26633	-	predicted gene, 26633	ncRNA	0.085000	0.696517	
mm_115799.1	chr13	19356079	19356279	-	1	NA	NA	NA	39634	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.587065	
mm_76135.1	chr8	81014691	81014891	-	1	NA	NA	NA	115	NM_027554	74841	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	0.080000	0.686567	
mm_48715.1	chr5	147307145	147307345	-	1	NA	NA	NA	4	NM_007673	12591	Mm.20358	NM_007673	ENSMUSG00000029646	Cdx2	Cdx-2	caudal type homeobox 2	protein-coding	0.065000	0.592040	
mm_171504.1	chr4	146270261	146270461	+	1	NA	NA	NA	-24	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.040000	0.517413	
mm_152768.1	chr19	20727451	20727651	-	1	NA	NA	NA	5	NM_011921	26358	Mm.14609	NM_011921	ENSMUSG00000024747	Aldh1a7	AI987940|Ahd2-like|Aldh-pb|Aldh1a4|Aldhpb	aldehyde dehydrogenase family 1, subfamily A7	protein-coding	0.010000	0.512438	
mm_38216.1	chr4	135971801	135972001	-	1	NA	NA	NA	693	NM_011942	26394	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	0.010000	0.527363	
mm_95296.1	chr11	46056070	46056270	+	1	NA	NA	NA	186	NM_001291891	11492	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.090000	0.656716	
mm_63953.1	chr7	139894918	139895118	+	1	NA	NA	NA	322	NM_177261	76484	Mm.44442	NM_177261	ENSMUSG00000066129	Kndc1	2410012C07Rik|B830014K08Rik|VKIND|very-kind	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding	0.100000	0.731343	
mm_47501.1	chr5	124034501	124034701	-	1	NA	NA	NA	-2341	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.030000	0.487562	-94(GTTTTTAGAGTA,+,0.00)
mm_133170.1	chr16	72027417	72027617	+	1	NA	NA	NA	206810	NR_131116	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0.035000	0.482587	
mm_25776.1	chr3	126596874	126597074	+	1	NA	NA	NA	23	NM_023813	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.120000	0.766169	
mm_42487.1	chr5	115471892	115472092	+	1	NA	NA	NA	5726	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.015000	0.517413	
mm_33249.1	chr4	127125958	127126158	+	1	NA	NA	NA	15	NM_001099319	100039968	Mm.392655	NM_001099319	ENSMUSG00000070737	Tmem35b	Gm12942|OTTMUSG00000009332|Zmym6nb	transmembrane protein 35B	protein-coding	0.095000	0.656716	
mm_147117.1	chr18	35739971	35740171	-	1	NA	NA	NA	483	NM_001289592	72512	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0.010000	0.492537	
mm_38569.1	chr4	141790564	141790764	-	1	NA	NA	NA	-20	NM_172338	214063	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	0.115000	0.706468	
mm_145493.1	chr18	60390086	60390286	+	1	NA	NA	NA	14157	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.010000	0.432836	
mm_12867.1	chr2	83812645	83812845	+	1	NA	NA	NA	17	NM_175514	241520	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	0.140000	0.776119	
mm_10481.1	chr2	14739131	14739331	+	1	NA	NA	NA	18589	NR_028497	625342	Mm.484784	NR_028497		Gm13315	OTTMUSG00000011384	lactate dehydrogenase A pseudogene	pseudo	0.040000	0.527363	
mm_169006.1	chr13	104916557	104916757	-	1	NA	NA	NA	-52764	NM_029984	77803	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik	family with sequence similarity 159, member B	protein-coding	0.025000	0.467662	-32(CTTTAAATACCC,+,0.00)
mm_100142.1	chr11	115992866	115993066	+	1	NA	NA	NA	18241	NM_133663	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.005000	0.582090	
mm_106554.1	chr11	120617770	120617970	-	1	NA	NA	NA	20	NM_024229	68671	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	0.130000	0.706468	
mm_120610.1	chr14	70205076	70205276	+	1	NA	NA	NA	-553	NM_001271408	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.010000	0.557214	
mm_62189.1	chr7	97579485	97579685	+	1	NA	NA	NA	-88	NM_001177947	66273	Mm.41583	NM_183251	ENSMUSG00000035642	Aamdc	1810020D17Rik|1810037D19Rik|LI2	adipogenesis associated Mth938 domain containing	protein-coding	0.070000	0.626866	
mm_23162.1	chr3	40708783	40708983	+	1	NA	NA	NA	12	NM_178386	73333	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	0.085000	0.646766	
mm_94977.1	chr11	31671936	31672136	+	1	NA	NA	NA	-174	NM_001024919	69556	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.055000	0.532338	
mm_2901.1	chr1	131962855	131963055	+	1	NA	NA	NA	40	NM_001177628	212980	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.085000	0.716418	6(AGATTTAAAAGG,-,0.00)
mm_43781.1	chr5	142367696	142367896	+	1	NA	NA	NA	-33701	NM_199068	17425	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf	forkhead box K1	protein-coding	0.120000	0.721393	
mm_161525.1	chr15	100870496	100870696	+	1	NA	NA	NA	-49	NM_001077499	20273	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	0.150000	0.766169	
mm_75769.1	chr8	69978207	69978407	-	1	NA	NA	NA	-3924	NM_001113346	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.005000	0.363184	
mm_108500.1	chr12	83947437	83947637	+	1	NA	NA	NA	-3071	NM_023633	71952	Mm.251483	NM_023633	ENSMUSG00000046791	2410016O06Rik	MAPJD|NO66	RIKEN cDNA 2410016O06 gene	protein-coding	0.015000	0.412935	-23(AGCTTTATAAGC,-,0.00)
mm_150772.1	chr19	44294063	44294263	+	1	NA	NA	NA	487	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.040000	0.487562	
mm_94251.1	chr11	3330738	3330938	+	1	NA	NA	NA	107	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.025000	0.572139	
mm_162697.1	chr10	20175208	20175408	-	1	NA	NA	NA	26388	NM_001198635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.010000	0.557214	
mm_14202.1	chr2	127221759	127221959	+	1	NA	NA	NA	13455	NM_177214	320632	Mm.215860	NM_177214	ENSMUSG00000003660	Snrnp200	A330064G03Rik|Ascc3l1|BC011390|HELIC2|U5-200-KD|U5-200KD	small nuclear ribonucleoprotein 200 (U5)	protein-coding	0.020000	0.482587	78(AGGTATAAAAAG,-,0.00)
mm_55478.1	chr6	68910855	68911055	-	1	NA	NA	NA	416219	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.378109	
mm_4039.1	chr1	165774380	165774580	+	1	NA	NA	NA	10700	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.010000	0.402985	
mm_111924.1	chr12	108882676	108882876	-	1	NA	NA	NA	10422	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.030000	0.527363	
mm_55698.1	chr6	72899667	72899867	-	1	NA	NA	NA	212	NM_019715	74287	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0.160000	0.850746	
mm_106607.1	chr11	120784120	120784320	-	1	NA	NA	NA	-16	NM_009053	19719	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.165000	0.776119	-4(CACTCTTAAAGG,-,0.00),-1(TCTTAAAGGGGC,+,0.00)
mm_147415.1	chr18	46141487	46141687	-	1	NA	NA	NA	57231	NM_001170855	28105	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.005000	0.517413	
mm_53620.1	chr6	140424060	140424260	+	1	NA	NA	NA	61	NM_144920	109135	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.145000	0.711443	
mm_57178.1	chr6	122848275	122848475	-	1	NA	NA	NA	7782	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.010000	0.393035	
mm_25074.1	chr3	99885368	99885568	+	1	NA	NA	NA	51	NM_028892	74362	Mm.55847	NM_028892	ENSMUSG00000027867	Spag17	4931427F14Rik|PF6|Spag17-ps	sperm associated antigen 17	protein-coding	0.040000	0.567164	
mm_69342.1	chr7	129769753	129769953	-	1	NA	NA	NA	177990	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.005000	0.467662	
mm_65748.1	chr7	28546965	28547165	-	1	NA	NA	NA	189	NM_001081115	233038	Mm.224815	NM_001081115	ENSMUSG00000047586	Nccrp1	1190020J12Rik|Gm163|NCCRP-1	non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)	protein-coding	0.055000	0.611940	-86(CTCTCTTAAAAG,-,0.00),-84(CTCTTAAAAGCC,+,0.00)
mm_106569.1	chr11	120648021	120648221	-	1	NA	NA	NA	216	NM_026751	68515	Mm.194594	NM_026751	ENSMUSG00000025141	Myadml2	1110012N22Rik	myeloid-associated differentiation marker-like 2	protein-coding	0.020000	0.601990	
mm_62951.1	chr7	119596668	119596868	+	1	NA	NA	NA	-21060	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.005000	0.472637	
mm_87284.1	chr10	42273989	42274189	+	1	NA	NA	NA	2653	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.030000	0.611940	
mm_150588.1	chr19	40661196	40661396	+	1	NA	NA	NA	1526	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.005000	0.487562	
mm_120275.1	chr14	63129191	63129391	+	1	NA	NA	NA	6829	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.437811	-34(GGCTATTTAAGG,-,0.00)
mm_11990.1	chr2	55437430	55437630	+	1	NA	NA	NA	1560	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.045000	0.547264	
mm_138354.1	chr17	34981772	34981972	+	1	NA	NA	NA	18	NM_001204274	27756	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.100000	0.646766	
mm_135684.1	chr16	52424479	52424679	-	1	NA	NA	NA	28502	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.348259	-100(TGTTATATAAGC,-,0.00),57(TTGTCTTAAAGG,-,0.00)
mm_74796.1	chr8	22398390	22398590	-	1	NA	NA	NA	131	NM_181325	18408	Mm.200907	NM_181325	ENSMUSG00000031482	Slc25a15	D630044L02Rik|Ornt1	solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15	protein-coding	0.130000	0.786070	
mm_160002.1	chr6	121838434	121838634	+	1	NA	NA	NA	-7	NM_008645	17836	Mm.1311	NM_008645	ENSMUSG00000059908	Mug1	-	murinoglobulin 1	protein-coding	0.010000	0.437811	
mm_93136.1	chr10	92162659	92162859	-	1	NA	NA	NA	2419	NR_028262	110333	Mm.429764	NR_028262		Rmst	100041799|AI853140|C230053E11Rik|D930049J19Rik|Dmt2|Gm3515|M2|Ncrms	rhabdomyosarcoma 2 associated transcript (non-coding RNA)	ncRNA	0.070000	0.547264	
mm_84027.1	chr9	57761847	57762047	-	1	NA	NA	NA	3913	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.005000	0.522388	
mm_72337.1	chr8	79225833	79226033	+	1	NA	NA	NA	22650	NM_026315	67687	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.035000	0.492537	
mm_81988.1	chr9	121415877	121416077	+	1	NA	NA	NA	49019	NM_175114	67095	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.035000	0.651741	
mm_46911.1	chr5	114380351	114380551	-	1	NA	NA	NA	54	NM_001159941	330171	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	0.115000	0.721393	
mm_46756.1	chr5	112228977	112229177	-	1	NA	NA	NA	-129	NR_003718	330166	Mm.44854	NR_003718	ENSMUSG00000097767	Miat	3632434I06|A230057G18Rik|Rncr2|gomafu	myocardial infarction associated transcript (non-protein coding)	ncRNA	0.105000	0.676617	
mm_112944.1	chr13	20999882	21000082	+	1	NA	NA	NA	73317	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.025000	0.437811	
mm_22523.1	chr3	7646816	7647016	+	1	NA	NA	NA	-33156	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.000000	0.288557	-13(CTCTATTAAAAG,-,0.00)
mm_144116.1	chr18	4396678	4396878	+	1	NA	NA	NA	21186	NM_026157	67440	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0.005000	0.318408	
mm_93413.1	chr10	108498207	108498407	-	1	NA	NA	NA	166118	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.015000	0.417910	42(GACTTTAAAAAA,-,0.00)
mm_172890.1	chr9	5548532	5548732	-	1	NA	NA	NA	203156	NM_009808	12364	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0.020000	0.452736	
mm_24370.1	chr3	90104060	90104260	+	1	NA	NA	NA	28	NM_029937	77595	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	0.045000	0.587065	
mm_17315.1	chr2	26440870	26441070	-	1	NA	NA	NA	4246	NM_153125	227648	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	0.010000	0.507463	
mm_141965.1	chr17	35121260	35121460	-	1	NA	NA	NA	-68	NM_009975	13001	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	0.090000	0.626866	
mm_40493.1	chr5	57717403	57717603	+	1	NA	NA	NA	416	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	0.110000	0.631841	
mm_162579.1	chr1	177796589	177796789	-	1	NA	NA	NA	-180	NM_007422	11566	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.105000	0.736318	
mm_82474.1	chr9	16502076	16502276	-	1	NA	NA	NA	-123945	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.105000	0.691542	
mm_2556.1	chr1	111833171	111833371	+	1	NA	NA	NA	31647	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0.000000	0.273632	
mm_153234.1	chr19	35858280	35858480	-	1	NA	NA	NA	198980	NM_001347442	15566	Mm.254266	NM_008315	ENSMUSG00000024798	Htr7	5-HT7	5-hydroxytryptamine (serotonin) receptor 7	protein-coding	0.005000	0.383085	
mm_17105.1	chr2	24048763	24048963	-	1	NA	NA	NA	516	NM_080462	140483	Mm.33120	NM_080462	ENSMUSG00000026986	Hnmt	1500031F01Rik|AI788969	histamine N-methyltransferase	protein-coding	0.035000	0.477612	
mm_112310.1	chr12	114851575	114851775	-	1	NA	NA	NA	-337981	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.417910	
mm_115877.1	chr13	21753363	21753563	-	1	NA	NA	NA	449	NM_178183	319169	Mm.370338	NM_178183	ENSMUSG00000063021	Hist1h2ak	-	histone cluster 1, H2ak	protein-coding	0.055000	0.592040	
mm_163245.1	chr11	106066677	106066877	+	1	NA	NA	NA	670	NM_027346	70207	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	0.085000	0.512438	
mm_62372.1	chr7	100640472	100640672	+	1	NA	NA	NA	16393	NM_001163187	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.000000	0.263682	
mm_59184.1	chr7	24470204	24470404	+	1	NA	NA	NA	7821	NM_011113	18793	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.030000	0.467662	
mm_156763.1	chrX	160529610	160529810	+	1	NA	NA	NA	27276	NM_001177878	110094	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	0.015000	0.417910	
mm_145780.1	chr18	65075947	65076147	+	1	NA	NA	NA	52520	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.015000	0.507463	
mm_97720.1	chr11	80209804	80210004	+	1	NA	NA	NA	849	NM_021536	59040	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	0.025000	0.343284	
mm_59776.1	chr7	28835809	28836009	+	1	NA	NA	NA	1739	NM_010707	16857	Mm.210336	NM_010707		Lgals6	galectin-6	lectin, galactose binding, soluble 6	protein-coding	0.030000	0.532338	
mm_124252.1	chr14	101841565	101841765	-	1	NA	NA	NA	1042	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.010000	0.422886	-34(CAGCTTAAAAGA,-,0.00)
mm_162610.1	chr1	183297185	183297385	-	1	NA	NA	NA	225	NM_181732	108909	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	0.060000	0.656716	
mm_100623.1	chr11	121702299	121702499	+	1	NA	NA	NA	-28	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.095000	0.736318	
mm_21977.1	chr2	167358289	167358489	-	1	NA	NA	NA	-9211	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.010000	0.398010	
mm_101779.1	chr11	45752860	45753060	-	1	NA	NA	NA	-55123	NR_045876	100009664	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.010000	0.388060	-97(CCTCATATAAGC,-,0.00)
mm_157450.1	chrX	42148934	42149134	-	1	NA	NA	NA	-378	NM_001077712	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.140000	0.741294	
mm_44686.1	chr5	30144184	30144384	-	1	NA	NA	NA	10696	NM_178878	97212	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	0.020000	0.427861	
mm_37805.1	chr4	130818599	130818799	-	1	NA	NA	NA	26162	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.035000	0.601990	
mm_35819.1	chr4	46991779	46991979	-	1	NA	NA	NA	-165	NM_001081141	242425	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	0.140000	0.805970	
mm_2033.1	chr1	87205708	87205908	+	1	NA	NA	NA	-3	NM_009604	11449	Mm.2810	NM_009604	ENSMUSG00000026253	Chrng	Achr-3|Acrg	cholinergic receptor, nicotinic, gamma polypeptide	protein-coding	0.005000	0.611940	
mm_116170.1	chr13	30792201	30792401	-	1	NA	NA	NA	43068	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.015000	0.477612	
mm_163099.1	chr11	69735175	69735375	-	1	NA	NA	NA	23358	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.010000	0.527363	
mm_95737.1	chr11	54691351	54691551	+	1	NA	NA	NA	95305	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.000000	0.487562	
mm_160132.1	chr7	30586699	30586899	-	1	NA	NA	NA	1927	NM_001290573	75410	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	0.075000	0.671642	
mm_129811.1	chr15	82998492	82998692	-	1	NA	NA	NA	24546	NM_028728	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.005000	0.552239	-54(ACCCCTATAAGG,-,0.00),-52(CCCTATAAGGAA,+,0.00)
mm_172300.1	chr7	103105958	103106158	+	1	NA	NA	NA	8315	NM_147087	259091	Mm.377835	NM_147087	ENSMUSG00000078080	Olfr585	MOR14-4	olfactory receptor 585	protein-coding	0.055000	0.646766	
mm_78736.1	chr9	41585295	41585495	+	1	NA	NA	NA	3469	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA	0.015000	0.368159	
mm_63097.1	chr7	122377310	122377510	+	1	NA	NA	NA	88285	NM_008855	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.010000	0.477612	12(CACCTTTAAAGA,-,0.00),13(ACCTTTAAAGAC,+,0.00)
mm_81733.1	chr9	113756319	113756519	+	1	NA	NA	NA	14946	NM_001114347	76499	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.025000	0.467662	
mm_95768.1	chr11	54908482	54908682	+	1	NA	NA	NA	5728	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.020000	0.522388	
mm_71429.1	chr8	46492763	46492963	+	1	NA	NA	NA	1897	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.035000	0.502488	
mm_4493.1	chr1	173641312	173641512	+	1	NA	NA	NA	10553	NM_175026	236312	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	0.000000	0.378109	
mm_16815.1	chr2	11333287	11333487	-	1	NA	NA	NA	-6102	NR_040369	100503147	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	OTTMUSG00000011311	predicted gene 13293	ncRNA	0.025000	0.537313	-42(TGGTTTAAATGG,-,0.00),-24(CGCGATTAAAGG,-,0.00)
mm_120199.1	chr14	61648322	61648522	+	1	NA	NA	NA	-16312	NR_029733	387174		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0.145000	0.756219	
mm_159486.1	chr4	42157992	42158192	+	1	NA	NA	NA	0	NM_001199959	100040048	Mm.6660	NM_001199959	ENSMUSG00000096826	Ccl27b	Ctack|ENSMUSG00000066202|Scya27b	chemokine (C-C motif) ligand 27b	protein-coding	0.020000	0.557214	
mm_19953.1	chr2	117338383	117338583	-	1	NA	NA	NA	4394	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.005000	0.567164	
mm_34738.1	chr4	152199918	152200118	+	1	NA	NA	NA	174	NM_001146058	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.000000	0.512438	
mm_142248.1	chr17	37483149	37483349	-	1	NA	NA	NA	280	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.015000	0.532338	
mm_80904.1	chr9	100597605	100597805	+	1	NA	NA	NA	-26620	NM_001101483	245020	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	0.035000	0.517413	
mm_23806.1	chr3	79885060	79885260	+	1	NA	NA	NA	-770	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.025000	0.457711	-81(CAGCTTTTAAGG,-,0.00),-80(AGCTTTTAAGGC,-,0.00),-79(GCTTTTAAGGCT,+,0.00)
mm_162524.1	chr1	157525971	157526171	+	1	NA	NA	NA	-99	NM_001159986	89867	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	0.015000	0.532338	77(GTCTCTAAGAGG,-,0.00)
mm_160930.1	chr11	89538435	89538635	-	1	NA	NA	NA	-119587	NM_172534	382543	Mm.60997	NM_172534	ENSMUSG00000047773	Ankfn1	4932411E22Rik|Gm1175|nmf9	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding	0.020000	0.462687	
mm_57457.1	chr6	125168893	125169093	-	1	NA	NA	NA	-2526	NM_001289726	14433	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0.005000	0.437811	-54(TTCTTTTTAAGC,-,0.00),-52(CTTTTTAAGCAG,+,0.00)
mm_143217.1	chr17	62882769	62882969	-	1	NA	NA	NA	-1552	NM_010109	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.150000	0.761194	
mm_103542.1	chr11	77513242	77513442	-	1	NA	NA	NA	-69	NM_001024920	216964	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	0.165000	0.815920	
mm_125198.1	chr15	32920743	32920943	+	1	NA	NA	NA	120	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0.075000	0.611940	
mm_1909.1	chr1	85904485	85904685	+	1	NA	NA	NA	10075	NM_022417	64294	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.005000	0.388060	
mm_126808.1	chr15	87651944	87652144	+	1	NA	NA	NA	26814	NM_134096	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.015000	0.502488	
mm_73898.1	chr8	119437013	119437213	+	1	NA	NA	NA	-49	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.030000	0.616915	
mm_4243.1	chr1	171389052	171389252	+	1	NA	NA	NA	192	NM_001005508	226652	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	0.010000	0.636816	
mm_156786.1	chrX	162500288	162500488	+	1	NA	NA	NA	143270	NM_001290633	194590	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	0.010000	0.432836	
mm_164285.1	chr15	103014253	103014453	+	1	NA	NA	NA	345	NM_175730	15424	Mm.103825	NM_175730	ENSMUSG00000022485	Hoxc5	AI181837|Hox-3.4|Hox-6.2	homeobox C5	protein-coding	0.095000	0.696517	
mm_58706.1	chr7	12965763	12965963	+	1	NA	NA	NA	-1	NM_178732	243834	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	0.065000	0.572139	
mm_154148.1	chr19	58454354	58454554	-	1	NA	NA	NA	944	NM_001285457	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.105000	0.696517	
mm_123217.1	chr14	59441205	59441405	-	1	NA	NA	NA	324	NM_026908	69008	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding	0.045000	0.567164	
mm_97956.1	chr11	83711128	83711328	+	1	NA	NA	NA	2224	NM_007969	14038	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	0.005000	0.407960	-57(ATCTTTATAAGC,-,0.00)
mm_115015.1	chr13	98354889	98355089	+	1	NA	NA	NA	744	NM_008242	15229	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	0.135000	0.736318	
mm_149800.1	chr19	23687297	23687497	+	1	NA	NA	NA	-3	NM_028208	72351	Mm.474795	NM_028208	ENSMUSG00000074925	Ptar1	1700084D09Rik|2010013L17Rik|4930428J16Rik|AI449677	protein prenyltransferase alpha subunit repeat containing 1	protein-coding	0.165000	0.771144	
mm_29349.1	chr3	108415931	108416131	-	1	NA	NA	NA	-537	NM_001004177	53883	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	0.155000	0.771144	-61(GCTTTAAGACCG,+,0.00)
mm_97614.1	chr11	78952716	78952916	+	1	NA	NA	NA	27525	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.060000	0.606965	
mm_73469.1	chr8	106668720	106668920	+	1	NA	NA	NA	-14248	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.000000	0.388060	
mm_74971.1	chr8	27042956	27043156	-	1	NA	NA	NA	501	NM_054057	114863	Mm.277501	NM_054057	ENSMUSG00000031485	Prosc	1700024N20Rik|2200002F22Rik	proline synthetase co-transcribed	protein-coding	0.100000	0.616915	
mm_123171.1	chr14	57398422	57398622	-	1	NA	NA	NA	-39	NM_030004	68631	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.080000	0.686567	
mm_2177.1	chr1	88453290	88453490	+	1	NA	NA	NA	46380	NM_029269	75396	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	0.010000	0.492537	
mm_48635.1	chr5	145166919	145167119	-	1	NA	NA	NA	85	NM_133735	71799	Mm.277413	NM_133735	ENSMUSG00000029624	Ptcd1	1110069M14Rik	pentatricopeptide repeat domain 1	protein-coding	0.090000	0.587065	
mm_134488.1	chr16	18629808	18630008	-	1	NA	NA	NA	30	NM_213614	18951	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.165000	0.810945	
mm_91338.1	chr10	26078760	26078960	-	1	NA	NA	NA	192	NM_029881	77220	Mm.266260	NM_029881	ENSMUSG00000049420	Tmem200a	C030003D03Rik	transmembrane protein 200A	protein-coding	0.080000	0.587065	
mm_2971.1	chr1	133068388	133068588	+	1	NA	NA	NA	22476	NM_001099276	240752	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphoinositide-3-kinase, class 2, beta polypeptide	protein-coding	0.005000	0.542289	-70(GGCTTTTTAAAG,-,0.00),-69(GCTTTTTAAAGG,-,0.00),-68(CTTTTTAAAGGC,+,0.00),-30(CTATTTATAGGG,+,0.00)
mm_8979.1	chr1	165634414	165634614	-	1	NA	NA	NA	27	NM_001001880	68481	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.090000	0.711443	
mm_149567.1	chr19	12801267	12801467	+	1	NA	NA	NA	2758	NM_134152	107321	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	0.010000	0.427861	
mm_150206.1	chr19	32786969	32787169	+	1	NA	NA	NA	29492	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.000000	0.383085	
mm_130543.1	chr15	98953489	98953689	-	1	NA	NA	NA	-88	NM_011653	22142	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	0.055000	0.587065	5(CTGTATATAAGG,-,0.00)
mm_101738.1	chr11	43375870	43376070	-	1	NA	NA	NA	-1509	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.000000	0.437811	-100(GTGTTTAAAAGC,-,0.00)
mm_75987.1	chr8	72361357	72361557	-	1	NA	NA	NA	42395	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.010000	0.467662	
mm_16237.1	chr2	173156245	173156445	+	1	NA	NA	NA	3272	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.015000	0.492537	
mm_125433.1	chr15	44457366	44457566	+	1	NA	NA	NA	-87	NM_138674	192190	Mm.211494	NM_138674	ENSMUSG00000038725	Pkhd1l1	AB055648|PKHDL1	polycystic kidney and hepatic disease 1-like 1	protein-coding	0.055000	0.641791	
mm_26272.1	chr3	142504261	142504461	+	1	NA	NA	NA	7427	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.025000	0.442786	
mm_117578.1	chr13	86054121	86054321	-	1	NA	NA	NA	-7426	NM_007749	12867	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	0.030000	0.507463	
mm_169808.1	chr16	18533208	18533408	-	1	NA	NA	NA	34437	NR_104347	13972	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|OTTMUSG00000033458|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	0.020000	0.343284	
mm_47171.1	chr5	120744135	120744335	-	1	NA	NA	NA	5613	NM_145227	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.000000	0.353234	
mm_97809.1	chr11	82961742	82961942	+	1	NA	NA	NA	-1161	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.000000	0.432836	
mm_9935.1	chr1	190144109	190144309	-	1	NA	NA	NA	26471	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding	0.000000	0.383085	
mm_130525.1	chr15	98892090	98892290	-	1	NA	NA	NA	6350	NM_007857	13363	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	0.010000	0.452736	
mm_168498.1	chr11	52358566	52358766	-	1	NA	NA	NA	-2196	NM_011694	22333	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.015000	0.507463	69(GCCCAGAAAAGC,-,0.00)
mm_99165.1	chr11	100713828	100714028	+	1	NA	NA	NA	78	NM_029307	75482	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.075000	0.656716	
mm_106084.1	chr11	116175153	116175353	-	1	NA	NA	NA	-7075	NM_172571	217335	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.045000	0.626866	
mm_11973.1	chr2	54854593	54854793	+	1	NA	NA	NA	418306	NM_173030	271786	Mm.330227	NM_173030	ENSMUSG00000060988	Galnt13	A230002A12|A230020F20|BB182356	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	protein-coding	0.005000	0.432836	
mm_94598.1	chr11	11821736	11821936	+	1	NA	NA	NA	-12874	NM_001163360	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.050000	0.567164	
mm_26884.1	chr3	17789529	17789729	-	1	NA	NA	NA	-292	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.010000	0.457711	
mm_31299.1	chr4	45998861	45999061	+	1	NA	NA	NA	26664	NM_146142	100121	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.010000	0.393035	72(TCTTTTAGAGCC,+,0.00)
mm_134369.1	chr16	17121683	17121883	-	1	NA	NA	NA	2359	NR_029659	723816		NR_029659	ENSMUSG00000065572	Mir130b	Mirn130b|mir-130b	microRNA 130b	ncRNA	0.035000	0.641791	
mm_130241.1	chr15	96615318	96615518	-	1	NA	NA	NA	26544	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.005000	0.373134	
mm_41523.1	chr5	92554953	92555153	+	1	NA	NA	NA	-16484	NM_001033478	384198	Mm.76757	NM_001033478	ENSMUSG00000057068	Fam47e	C730043O17|Gm1381	family with sequence similarity 47, member E	protein-coding	0.050000	0.636816	
mm_157903.1	chrX	77853389	77853589	-	1	NA	NA	NA	11	NM_017471	54192	Mm.8034	NM_017471	ENSMUSG00000000003	Pbsn	PB|Prbs	probasin	protein-coding	0.015000	0.502488	-73(AACTATAAAAAG,-,0.00)
mm_119560.1	chr14	48760765	48760965	+	1	NA	NA	NA	91577	NR_029384	606497	Mm.165199	NR_029384	ENSMUSG00000098682	Otx2os1	-	orthodenticle homeobox 2 opposite strand 1	ncRNA	0.005000	0.412935	
mm_29283.1	chr3	107674090	107674290	-	1	NA	NA	NA	22358	NM_145542	229709	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	0.015000	0.462687	
mm_113156.1	chr13	24802762	24802962	+	1	NA	NA	NA	1205	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.005000	0.407960	
mm_13275.1	chr2	101550290	101550490	+	1	NA	NA	NA	-74358	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.005000	0.482587	
mm_145225.1	chr18	50075713	50075913	+	1	NA	NA	NA	22531	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.000000	0.298507	
mm_8933.1	chr1	164307087	164307287	-	1	NA	NA	NA	297	NM_001160209	66352	Mm.33285	NM_025505	ENSMUSG00000026577	Blzf1	1700030G05Rik|Blzf1l|Golgin-45|Jem-1	basic leucine zipper nuclear factor 1	protein-coding	0.065000	0.611940	
mm_85809.1	chr9	110387491	110387691	-	1	NA	NA	NA	20619	NM_001081043	104831	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.000000	0.592040	
mm_19204.1	chr2	84501311	84501511	-	1	NA	NA	NA	5462	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	0.010000	0.402985	
mm_122059.1	chr14	30353402	30353602	-	1	NA	NA	NA	-16	NM_001083616	12289	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.225000	0.875622	
mm_52744.1	chr6	120472864	120473064	+	1	NA	NA	NA	9767	NM_008359	16172	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.010000	0.482587	
mm_18574.1	chr2	65567380	65567580	-	1	NA	NA	NA	12	NM_018732	20269	Mm.330256	NM_018732	ENSMUSG00000057182	Scn3a	Gm1000|Nav1.3	sodium channel, voltage-gated, type III, alpha	protein-coding	0.015000	0.358209	
mm_56983.1	chr6	120364259	120364459	-	1	NA	NA	NA	10	NR_045558	67200	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	0.080000	0.547264	
mm_95034.1	chr11	32058795	32058995	+	1	NA	NA	NA	42333	NR_130637	104692	Mm.414035	NR_130637	ENSMUSG00000086386	Gm12108	BB052462|OTTMUSG00000005365	predicted gene 12108	ncRNA	0.005000	0.457711	
mm_150241.1	chr19	34085202	34085402	+	1	NA	NA	NA	-15641	NM_023903	78753	Mm.195937	NM_023903	ENSMUSG00000056078	Lipm	4632427C23Rik|AW227514|Lipl3	lipase, family member M	protein-coding	0.005000	0.388060	
mm_19321.1	chr2	90566661	90566861	-	1	NA	NA	NA	13886	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.010000	0.447761	
mm_89317.1	chr10	87930592	87930792	+	1	NA	NA	NA	-35979	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.020000	0.422886	
mm_2612.1	chr1	120479252	120479452	+	1	NA	NA	NA	25732	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.005000	0.417910	
mm_79763.1	chr9	62677756	62677956	+	1	NA	NA	NA	1	NM_176922	319480	Mm.34883	NM_176922	ENSMUSG00000032243	Itga11	4732459H24Rik	integrin alpha 11	protein-coding	0.105000	0.721393	
mm_30926.1	chr4	32759017	32759217	+	1	NA	NA	NA	-41142	NM_175364	108755	Mm.1182	NM_175364	ENSMUSG00000045854	Lyrm2	2610208E05Rik	LYR motif containing 2	protein-coding	0.005000	0.462687	
mm_135641.1	chr16	52356062	52356262	-	1	NA	NA	NA	96919	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.015000	0.547264	
mm_13426.1	chr2	104596239	104596439	+	1	NA	NA	NA	5855	NM_001037326	228410	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	0.005000	0.358209	-49(AACTCTAAAAGG,-,0.00),16(GTCTTTATAGTC,+,0.00)
mm_106034.1	chr11	116077677	116077877	-	1	NA	NA	NA	184	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.025000	0.636816	
mm_96054.1	chr11	59566066	59566266	+	1	NA	NA	NA	5572	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.030000	0.452736	
mm_64442.1	chr7	142653639	142653839	+	1	NA	NA	NA	1257	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.010000	0.532338	
mm_96394.1	chr11	67250226	67250426	+	1	NA	NA	NA	12514	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.010000	0.412935	
mm_134898.1	chr16	29998155	29998355	-	1	NA	NA	NA	-10412	NR_033631	100043102	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	0.005000	0.447761	-75(TGCTCTATAAGA,-,0.00),-73(CTCTATAAGAGA,-,0.00)
mm_16017.1	chr2	167450921	167451121	+	1	NA	NA	NA	29311	NM_001304542	77031	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.030000	0.606965	
mm_18339.1	chr2	58139234	58139434	-	1	NA	NA	NA	20788	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.015000	0.353234	
mm_83188.1	chr9	41004516	41004716	-	1	NA	NA	NA	12	NM_001281954	54698	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	0.010000	0.547264	
mm_142772.1	chr17	49676383	49676583	-	1	NA	NA	NA	61311	NM_177052	319991	Mm.441340	NM_177052	ENSMUSG00000023999	Kif6	D130004B10Rik|D130084M03Rik	kinesin family member 6	protein-coding	0.005000	0.278607	
mm_118343.1	chr13	114458850	114459050	-	1	NA	NA	NA	1	NM_001301373	14313	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	0.060000	0.606965	77(ACTTTTAAAAGC,-,0.00),78(CTTTTAAAAGCT,+,0.00)
mm_160624.1	chr9	98842639	98842839	+	1	NA	NA	NA	152	NM_001134660	623166	Mm.390211	NM_001134660	ENSMUSG00000091080	Prr23a1	EG623166|Gm6400|Prr23a	proline rich 23A, member 1	protein-coding	0.080000	0.721393	
mm_112525.1	chr13	9276550	9276750	+	1	NA	NA	NA	125	NM_001081426	208440	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.140000	0.781095	
mm_140850.1	chr17	23677381	23677581	-	1	NA	NA	NA	-32	NM_013749	27279	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	0.090000	0.676617	
mm_69868.1	chr7	141455743	141455943	-	1	NA	NA	NA	655	NM_001163689	66853	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0.045000	0.587065	45(GCCCCTTAAGGC,-,0.00)
mm_148146.1	chr18	77064996	77065196	-	1	NA	NA	NA	-112	NM_008602	17344	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0.155000	0.776119	
mm_119406.1	chr14	44988098	44988298	+	1	NA	NA	NA	87	NM_008964	19217	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.010000	0.407960	
mm_150829.1	chr19	44746595	44746795	+	1	NA	NA	NA	-10699	NM_011037	18504	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0.125000	0.741294	
mm_172393.1	chr7	14087320	14087520	-	1	NA	NA	NA	35573	NM_001101586	629203	Mm.482066	NM_001101586	ENSMUSG00000074375	Sult2a3	EG629203|Gm6955	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 3	protein-coding	0.055000	0.636816	
mm_142587.1	chr17	46727264	46727464	-	1	NA	NA	NA	1801	NM_010321	14711	Mm.29395	NM_010321	ENSMUSG00000002769	Gnmt	-	glycine N-methyltransferase	protein-coding	0.040000	0.552239	
mm_44818.1	chr5	33652248	33652448	-	1	NA	NA	NA	226	NM_001289725	20492	Mm.4172	NM_009193	ENSMUSG00000004642	Slbp	-	stem-loop binding protein	protein-coding	0.115000	0.686567	
mm_90337.1	chr10	127084565	127084765	+	1	NA	NA	NA	5758	NM_001033263	216439	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.000000	0.462687	
mm_71256.1	chr8	40917458	40917658	+	1	NA	NA	NA	-8675	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.010000	0.378109	
mm_126544.1	chr15	82027992	82028192	+	1	NA	NA	NA	11723	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.015000	0.442786	
mm_51340.1	chr6	72438950	72439150	+	1	NA	NA	NA	367	NR_046011	78108	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	0.125000	0.676617	
mm_21540.1	chr2	163736172	163736372	-	1	NA	NA	NA	13967	NM_007398	11486	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0.015000	0.592040	
mm_27986.1	chr3	81975760	81975960	-	1	NA	NA	NA	-132	NM_019911	56720	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	0.015000	0.482587	-100(GGATATAAAAGC,-,0.00)
mm_152066.1	chr19	6532282	6532482	-	1	NA	NA	NA	10688	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.045000	0.557214	-60(CCCCTTAAAAAA,-,0.00)
mm_115635.1	chr13	12228300	12228500	-	1	NA	NA	NA	29713	NM_001081128	238505	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.020000	0.502488	
mm_99290.1	chr11	101322949	101323149	+	1	NA	NA	NA	-2014	NM_178932	237940	Mm.302277	NM_178932	ENSMUSG00000078651	Aoc2	RAO	amine oxidase, copper containing 2 (retina-specific)	protein-coding	0.030000	0.442786	
mm_55763.1	chr6	78466420	78466620	-	1	NA	NA	NA	2354	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.000000	0.398010	
mm_61211.1	chr7	64205791	64205991	+	1	NA	NA	NA	85	NR_029805	387207		NR_029805	ENSMUSG00000065585	Mir211	Mirn211|mir-211|mmu-mir-211	microRNA 211	ncRNA	0.010000	0.517413	
mm_59788.1	chr7	28931616	28931816	+	1	NA	NA	NA	30564	NM_021895	60595	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.010000	0.467662	
mm_34398.1	chr4	145209825	145210025	+	1	NA	NA	NA	-14920	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.020000	0.497512	-33(TCTTTTAAATGG,+,0.00)
mm_152345.1	chr19	9984502	9984702	-	1	NA	NA	NA	1956	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.030000	0.487562	
mm_43346.1	chr5	135132237	135132437	+	1	NA	NA	NA	-17374	NM_013763	27368	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0.010000	0.562189	
mm_25642.1	chr3	121291757	121291957	+	1	NA	NA	NA	40	NM_024178	66789	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0.060000	0.557214	
mm_62694.1	chr7	110122174	110122374	+	1	NA	NA	NA	215	NM_009516	22390	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.135000	0.736318	
mm_51569.1	chr6	83716548	83716748	+	1	NA	NA	NA	-4447	NR_002871	574519	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	0.015000	0.308458	
mm_170698.1	chr2	134763548	134763748	-	1	NA	NA	NA	-22516	NM_019677	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding	0.025000	0.487562	
mm_29716.1	chr3	124300642	124300842	-	1	NA	NA	NA	-20295	NM_146140	229801	Mm.165810	NM_146140	ENSMUSG00000044528	Tram1l1	A830091N21Rik	translocation associated membrane protein 1-like 1	protein-coding	0.010000	0.507463	-36(CACTATAAAAGG,-,0.00),-4(CTCTCTTTAAGC,-,0.00)
mm_164234.1	chr15	91633035	91633235	-	1	NA	NA	NA	-40089	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.015000	0.502488	
mm_93762.1	chr10	120193692	120193892	-	1	NA	NA	NA	7745	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.025000	0.467662	
mm_172379.1	chr7	130263919	130264119	-	1	NA	NA	NA	2789	NM_010207	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	0.030000	0.582090	
mm_34404.1	chr4	145224761	145224961	+	1	NA	NA	NA	22009	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.020000	0.537313	
mm_147454.1	chr18	46574224	46574424	-	1	NA	NA	NA	209	NM_173394	225471	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.045000	0.572139	
mm_144798.1	chr18	36106101	36106301	+	1	NA	NA	NA	-2	NR_015571	74966	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA	0.010000	0.492537	
mm_77146.1	chr8	111562438	111562638	-	1	NA	NA	NA	24195	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.010000	0.373134	
mm_41531.1	chr5	92684739	92684939	+	1	NA	NA	NA	1404	NM_015756	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.005000	0.333333	
mm_17978.1	chr2	37702981	37703181	-	1	NA	NA	NA	-55796	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding	0.160000	0.771144	
mm_132788.1	chr16	45016623	45016823	+	1	NA	NA	NA	73045	NM_001128132	74603	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0.010000	0.482587	
mm_172737.1	chr8	78489914	78490114	+	1	NA	NA	NA	18914	NM_001252089	19656	Mm.24718	NM_009033	ENSMUSG00000037070	Rbmxl1	Hnrpg|Rbmx|Rbmxrt	RNA binding motif protein, X-linked like-1	protein-coding	0.010000	0.482587	
mm_86121.1	chr9	116170298	116170498	-	1	NA	NA	NA	4965	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.015000	0.487562	-92(ACTTTTATGGTG,+,0.00),-33(CTGTATTAAAGG,-,0.00)
mm_2897.1	chr1	131931949	131932149	+	1	NA	NA	NA	21591	NM_001145804	98415	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.005000	0.393035	
mm_12669.1	chr2	75714947	75715147	+	1	NA	NA	NA	-10384	NM_010902	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.010000	0.378109	-35(GAGTTTATAAAG,-,0.00),-33(GTTTATAAAGTA,+,0.00)
mm_96947.1	chr11	70540815	70541015	+	1	NA	NA	NA	643	NM_001302476	18806	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	0.000000	0.522388	
mm_151797.1	chr19	5423711	5423911	-	1	NA	NA	NA	1168	NM_024176	66556	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	0.020000	0.562189	
mm_22873.1	chr3	29154122	29154322	+	1	NA	NA	NA	71645	NM_029412	75740	Mm.330948	NM_029412	ENSMUSG00000063600	Egfem1	6130401L20Rik|Efcab11	EGF-like and EMI domain containing 1	protein-coding	0.005000	0.363184	
mm_4657.1	chr1	180356329	180356529	+	1	NA	NA	NA	-25880	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.015000	0.577114	
mm_88528.1	chr10	78298214	78298414	+	1	NA	NA	NA	41893	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.025000	0.582090	
mm_103997.1	chr11	84870109	84870309	-	1	NA	NA	NA	204	NR_131201	102635561	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	0.100000	0.746269	
mm_58977.1	chr7	19052230	19052430	+	1	NA	NA	NA	-2357	NM_031255	83434	Mm.84435	NM_031255	ENSMUSG00000040866	Rsph6a	RSP4|Rshl1	radial spoke head 6 homolog A (Chlamydomonas)	protein-coding	0.025000	0.542289	-73(CCTCATAAAGGG,+,0.00),-73(CCTCATAAAGGG,-,0.00)
mm_170295.1	chr18	3040200	3040400	+	1	NA	NA	NA	83112	NM_001167539	100312476	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.015000	0.442786	
mm_40189.1	chr5	36465077	36465277	+	1	NA	NA	NA	-8	NM_024478	17713	Mm.21535	NM_024478	ENSMUSG00000029198	Grpel1	AA408748|mt-GrpE#1|mt-Grpel1	GrpE-like 1, mitochondrial	protein-coding	0.085000	0.616915	
mm_5574.1	chr1	39478647	39478847	-	1	NA	NA	NA	0	NM_018775	54610	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.125000	0.786070	
mm_83488.1	chr9	45945007	45945207	-	1	NA	NA	NA	-5517	NR_106055	102465659		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.020000	0.507463	
mm_69891.1	chr7	141637266	141637466	-	1	NA	NA	NA	16665	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.005000	0.477612	
mm_133780.1	chr16	94969202	94969402	+	1	NA	NA	NA	28394	NM_001025584	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.005000	0.542289	
mm_128754.1	chr15	64921549	64921749	-	1	NA	NA	NA	647	NM_001331075	11514	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	0.090000	0.676617	
mm_62911.1	chr7	117486631	117486831	+	1	NA	NA	NA	105752	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.020000	0.442786	
mm_169031.1	chr13	120304577	120304777	-	1	NA	NA	NA	4285	NM_001037925	625360	Mm.327506	NM_001037925	ENSMUSG00000094796	BC147527	-	cDNA sequence BC147527	protein-coding	0.030000	0.462687	
mm_2627.1	chr1	121035182	121035382	+	1	NA	NA	NA	-52123	NR_038008	98452	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0.010000	0.457711	-17(GAGTTTTAAAAG,-,0.00)
mm_165317.1	chr2	103605766	103605966	-	1	NA	NA	NA	39556	NM_178890	99382	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.010000	0.467662	
mm_162032.1	chr19	53944166	53944366	+	1	NA	NA	NA	-40	NM_001168505	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.060000	0.597015	
mm_65131.1	chr7	19508198	19508398	-	1	NA	NA	NA	33	NM_177692	232946	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.080000	0.641791	
mm_112237.1	chr12	113482303	113482503	-	1	NA	NA	NA	-7162	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.507463	
mm_32822.1	chr4	117550211	117550411	+	1	NA	NA	NA	-13	NM_001285902	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.105000	0.656716	
mm_5703.1	chr1	43397221	43397421	-	1	NA	NA	NA	-48430	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.005000	0.482587	
mm_77989.1	chr9	8095602	8095802	+	1	NA	NA	NA	38592	NM_001045524	234915	Mm.101341	NM_001045524	ENSMUSG00000040729	Cep126	Kiaa1377|mKIAA1377	centrosomal protein 126	protein-coding	0.010000	0.432836	
mm_80481.1	chr9	78209188	78209388	+	1	NA	NA	NA	17322	NM_010357	14860	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	0.005000	0.442786	
mm_60510.1	chr7	44479498	44479698	+	1	NA	NA	NA	-4919	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.010000	0.472637	
mm_106715.1	chr12	3834730	3834930	+	1	NA	NA	NA	27414	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.010000	0.572139	39(GGCTCTTAGAGG,-,0.00)
mm_77652.1	chr8	124564254	124564454	-	1	NA	NA	NA	5353	NM_007428	11606	Mm.301626	NM_007428	ENSMUSG00000031980	Agt	AI265500|AngI|AngII|Aogen|Serpina8	angiotensinogen (serpin peptidase inhibitor, clade A, member 8)	protein-coding	0.045000	0.592040	
mm_100866.1	chr11	5898435	5898635	-	1	NA	NA	NA	247	NM_022879	17898	Mm.46514	NM_022879	ENSMUSG00000020469	Myl7	MLC-2alpha|MLC2a|MYL2A|Mylc2a|RLC-A	myosin, light polypeptide 7, regulatory	protein-coding	0.020000	0.552239	
mm_24142.1	chr3	88297070	88297270	+	1	NA	NA	NA	35	NM_009836	12462	Mm.256034	NM_009836	ENSMUSG00000001416	Cct3	AL024092|Cctg|Tcp1-rs3|TriC-P5	chaperonin containing Tcp1, subunit 3 (gamma)	protein-coding	0.050000	0.537313	
mm_99682.1	chr11	106020041	106020241	+	1	NA	NA	NA	11938	NM_001037712	192775	Mm.343850	NM_001037712	ENSMUSG00000001901	Kcnh6	m-erg2	potassium voltage-gated channel, subfamily H (eag-related), member 6	protein-coding	0.060000	0.606965	
mm_70316.1	chr8	4248104	4248304	+	1	NA	NA	NA	-10	NM_001195258	100044509	Mm.439193	NM_001195258	ENSMUSG00000089736	Tgfbr3l	Gm14378|OTTMUSG00000016477	transforming growth factor, beta receptor III-like	protein-coding	0.035000	0.671642	
mm_115837.1	chr13	21287100	21287300	-	1	NA	NA	NA	5486	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.000000	0.407960	
mm_88377.1	chr10	76345350	76345550	+	1	NA	NA	NA	-159	NM_001081419	64451	Mm.33183	NM_001081419	ENSMUSG00000020231	Dip2a	4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184	disco interacting protein 2 homolog A	protein-coding	0.135000	0.711443	-33(AACTTTAAAGGC,-,0.00)
mm_131490.1	chr16	17266292	17266492	+	1	NA	NA	NA	-9908	NM_177473	224019	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	0.005000	0.363184	
mm_95725.1	chr11	54596015	54596215	+	1	NA	NA	NA	-31	NM_001252498	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.000000	0.437811	
mm_92296.1	chr10	73202373	73202573	-	1	NA	NA	NA	-115768	NR_040646	327768	Mm.417745	NR_040646		A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0.015000	0.517413	
mm_20022.1	chr2	119418362	119418562	-	1	NA	NA	NA	59167	NM_026574	68142	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	0.010000	0.368159	
mm_6457.1	chr1	74016624	74016824	-	1	NA	NA	NA	107723	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.015000	0.572139	
mm_165491.1	chr2	164613634	164613834	+	1	NA	NA	NA	34	NM_001012725	433502	Mm.376157	NM_001012725	ENSMUSG00000070531	Wfdc6b	WAP6b|Wfdc6	WAP four-disulfide core domain 6B	protein-coding	0.020000	0.582090	
mm_160305.1	chr7	140507330	140507530	-	1	NA	NA	NA	-112	NM_146520	258513	Mm.261779	NM_146520	ENSMUSG00000052508	Olfr536	MOR252-1|MOR252-4	olfactory receptor 536	protein-coding	0.000000	0.562189	
mm_59679.1	chr7	28435994	28436194	+	1	NA	NA	NA	97	NM_175021	233033	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0.190000	0.860697	
mm_30261.1	chr3	146769887	146770087	-	1	NA	NA	NA	251	NM_001164198	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.025000	0.422886	
mm_96163.1	chr11	61487904	61488104	+	1	NA	NA	NA	2560	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.025000	0.567164	
mm_158407.1	chrX	136868426	136868626	-	1	NA	NA	NA	14	NM_176971	319642	Mm.44557	NM_176971	ENSMUSG00000043463	Rab9b	9330195C02Rik	RAB9B, member RAS oncogene family	protein-coding	0.105000	0.741294	
mm_150688.1	chr19	42117462	42117662	+	1	NA	NA	NA	11431	NM_027106	69534	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0.005000	0.348259	
mm_34559.1	chr4	149637302	149637502	+	1	NA	NA	NA	18165	NR_105990	102465983		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.000000	0.388060	
mm_97224.1	chr11	75650462	75650662	+	1	NA	NA	NA	-947	NM_008659	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.020000	0.631841	
mm_134842.1	chr16	26526632	26526832	-	1	NA	NA	NA	39	NM_001101640	100043057	Mm.295917	NM_001101640	ENSMUSG00000091972	Tmem207	Gm540	transmembrane protein 207	protein-coding	0.020000	0.417910	
mm_71024.1	chr8	33536483	33536683	+	1	NA	NA	NA	-33961	NM_031374	104271	Mm.280624	NM_031374	ENSMUSG00000009628	Tex15	2210014E14Rik|AL022622|AU022940	testis expressed gene 15	protein-coding	0.000000	0.417910	
mm_26047.1	chr3	135689026	135689226	+	1	NA	NA	NA	2421	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.035000	0.482587	
mm_18401.1	chr2	60284029	60284229	-	1	NA	NA	NA	355	NM_025422	66205	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.125000	0.736318	
mm_14334.1	chr2	129592698	129592898	+	1	NA	NA	NA	-41	NM_001291020	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.050000	0.666667	
mm_68740.1	chr7	121064121	121064321	-	1	NA	NA	NA	10309	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.000000	0.402985	
mm_155001.1	chrX	40712787	40712987	+	1	NA	NA	NA	-688414	NM_016886	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding	0.005000	0.313433	22(CACTATAAAAGT,-,0.00),74(GTATTTAAAAGA,-,0.00)
mm_119673.1	chr14	52622430	52622630	+	1	NA	NA	NA	-126835	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.000000	0.388060	
mm_29872.1	chr3	130730401	130730601	-	1	NA	NA	NA	-103	NM_001005859	68436	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.120000	0.641791	
mm_129177.1	chr15	76273798	76273998	-	1	NA	NA	NA	-4059	NR_045747	100038659	Mm.448549	NR_045747		Mirt2	ENSMUSG00000075583|Gm10872|Gm24562	myocardial infraction associated transcript 2	ncRNA	0.005000	0.402985	
mm_169624.1	chr1	54026325	54026525	+	1	NA	NA	NA	168609	NM_001001883	329152	Mm.132150	NM_172655	ENSMUSG00000042807	Hecw2	A730039N16Rik|D030049F17Rik|Gm971|Nedl2|mKIAA1301	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.040000	0.606965	
mm_89721.1	chr10	98914580	98914780	+	1	NA	NA	NA	-472	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.170000	0.786070	
mm_158739.1	chrX	164076397	164076597	-	1	NA	NA	NA	-4	NM_001308385	20438	Mm.37215	NM_009173	ENSMUSG00000040749	Siah1b	AA960570|Sinh1b|siah-1b	seven in absentia 1B	protein-coding	0.090000	0.611940	
mm_36143.1	chr4	59472807	59473007	-	1	NA	NA	NA	-34274	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.020000	0.442786	
mm_139252.1	chr17	47734282	47734482	+	1	NA	NA	NA	-2655	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.015000	0.522388	
mm_96283.1	chr11	63046654	63046854	+	1	NA	NA	NA	-14905	NM_027660	71062	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0.020000	0.532338	
mm_66341.1	chr7	43465477	43465677	-	1	NA	NA	NA	2344	NM_001290316	75690	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.040000	0.606965	
mm_142998.1	chr17	56412895	56413095	-	1	NA	NA	NA	5914	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0.020000	0.323383	
mm_36841.1	chr4	106678549	106678749	-	1	NA	NA	NA	37	NM_001172073	72354	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	0.050000	0.582090	
mm_105120.1	chr11	101119795	101119995	-	1	NA	NA	NA	-52	NM_028933	67998	Mm.33881	NM_026501	ENSMUSG00000017802	Fam134c	1300010M03Rik|4933404C01Rik|AI551748	family with sequence similarity 134, member C	protein-coding	0.140000	0.666667	
mm_21309.1	chr2	157079557	157079757	-	1	NA	NA	NA	-392	NM_001164663	320706	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.075000	0.636816	
mm_107664.1	chr12	52854591	52854791	+	1	NA	NA	NA	155308	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.005000	0.452736	
mm_57746.1	chr6	129097234	129097434	-	1	NA	NA	NA	3569	NM_153506	232409	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0.010000	0.373134	
mm_75820.1	chr8	70476840	70477040	-	1	NA	NA	NA	3	NM_001122830	234378	Mm.187090	NM_172052	ENSMUSG00000055707	Klhl26	C630013N10Rik|Klkl26	kelch-like 26	protein-coding	0.120000	0.736318	
mm_135924.1	chr16	69863625	69863825	-	1	NA	NA	NA	19	NM_173069	224318	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0.015000	0.527363	66(GAGTTTATAAAG,-,0.00),68(GTTTATAAAGAG,+,0.00)
mm_79654.1	chr9	59618170	59618370	+	1	NA	NA	NA	986	NR_038074	67287	Mm.439943	NM_029922	ENSMUSG00000025237	Parp6	1700119G14Rik|2310028P13Rik|3110038K10Rik|ARTD17|C030013N01Rik|PARP-6	poly (ADP-ribose) polymerase family, member 6	protein-coding	0.005000	0.393035	43(GCTTTTAAATCT,+,0.00)
mm_15031.1	chr2	152695413	152695613	+	1	NA	NA	NA	8365	NM_025543	66405	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	0.050000	0.542289	
mm_157969.1	chrX	92679939	92680139	-	1	NA	NA	NA	-80467	NM_173783	215641	Mm.327999	NM_173783	ENSMUSG00000067649	Mageb18	B430216B18Rik	melanoma antigen family B, 18	protein-coding	0.025000	0.507463	
mm_137072.1	chr17	20956932	20957132	+	1	NA	NA	NA	11578	NM_016891	51792	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	0.030000	0.577114	
mm_115118.1	chr13	104228887	104229087	+	1	NA	NA	NA	-143	NM_172807	238831	Mm.98910	NM_172807	ENSMUSG00000021713	Ppwd1	4632422M10Rik|A330090G21Rik	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding	0.075000	0.611940	
mm_62110.1	chr7	96532604	96532804	+	1	NA	NA	NA	-190740	NR_046043	670727	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	OTTMUSG00000021245	predicted gene 15412	ncRNA	0.020000	0.582090	
mm_168828.1	chr12	22623284	22623484	-	1	NA	NA	NA	386859	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA	0.130000	0.776119	
mm_22503.1	chr3	7407262	7407462	+	1	NA	NA	NA	40758	NM_008862	18767	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	0.010000	0.338308	
mm_5281.1	chr1	20617882	20618082	-	1	NA	NA	NA	75	NM_153179	241035	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	0.030000	0.497512	
mm_77788.1	chr9	3026386	3026586	+	1	NA	NA	NA	12257	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.015000	0.368159	
mm_124099.1	chr14	79300829	79301029	-	1	NA	NA	NA	706	NM_025427	66214	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	0.080000	0.661692	
mm_92610.1	chr10	80136378	80136578	-	1	NA	NA	NA	909	NM_001195268	100503659	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.075000	0.701493	
mm_137138.1	chr17	23604598	23604798	+	1	NA	NA	NA	3872	NM_001289482	332221	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	0.010000	0.552239	
mm_2483.1	chr1	105984342	105984542	+	1	NA	NA	NA	-5964	NM_001122676	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.015000	0.407960	
mm_24156.1	chr3	88446698	88446898	+	1	NA	NA	NA	-5847	NR_105978	102465611		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	0.005000	0.422886	77(GTCTATAAAAAG,-,0.00)
mm_11133.1	chr2	28446876	28447076	+	1	NA	NA	NA	-965	NM_001005420	241289	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	0.170000	0.835821	
mm_94054.1	chr10	128185999	128186199	-	1	NA	NA	NA	-5802	NM_001039080	56516	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.005000	0.507463	
mm_85043.1	chr9	89177786	89177986	-	1	NA	NA	NA	-21387	NM_007534	12045	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0.010000	0.422886	
mm_57821.1	chr6	129462708	129462908	-	1	NA	NA	NA	9971	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.417910	
mm_62259.1	chr7	99323088	99323288	+	1	NA	NA	NA	30051	NM_009825	12406	Mm.22708	NM_009825	ENSMUSG00000070436	Serpinh1	BERF-1|Cbp1|Cbp2|Hsp47|J6|Serpinh2|gp46	serine (or cysteine) peptidase inhibitor, clade H, member 1	protein-coding	0.010000	0.517413	
mm_20328.1	chr2	127511015	127511215	-	1	NA	NA	NA	10277	NM_001291005	56461	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0.015000	0.601990	
mm_162434.1	chr1	101608294	101608494	+	1	NA	NA	NA	452626	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0.015000	0.442786	
mm_92196.1	chr10	68135195	68135395	-	1	NA	NA	NA	143431	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.010000	0.442786	24(TCTTTAAGAGCA,+,0.00)
mm_50867.1	chr6	55451651	55451851	+	1	NA	NA	NA	-227	NM_001025372	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	0.025000	0.597015	
mm_129495.1	chr15	78837717	78837917	-	1	NA	NA	NA	-4830	NM_027219	104445	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	0.010000	0.497512	
mm_76453.1	chr8	85119587	85119787	-	1	NA	NA	NA	3408	NM_001037745	244556	Mm.334682	NM_001037745	ENSMUSG00000074194	Zfp791	EG244556	zinc finger protein 791	protein-coding	0.030000	0.547264	
mm_144520.1	chr18	24941319	24941519	+	1	NA	NA	NA	224546	NM_001142697	66648	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.020000	0.587065	
mm_110614.1	chr12	56613181	56613381	-	1	NA	NA	NA	3	NM_008701	18094	Mm.129420	NM_008701	ENSMUSG00000058669	Nkx2-9	Nkx-2.9|Nkx2-8|Nkx2.9|tinman	NK2 homeobox 9	protein-coding	0.070000	0.626866	
mm_72690.1	chr8	84969568	84969768	+	1	NA	NA	NA	46	NM_011563	21672	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0.085000	0.641791	-8(ACGCATAAAAGG,-,0.00)
mm_5674.1	chr1	43098556	43098756	-	1	NA	NA	NA	-34	NM_001013025	73122	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	0.090000	0.656716	
mm_130953.1	chr15	103255330	103255530	-	1	NA	NA	NA	9	NM_008685	18022	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.070000	0.676617	
mm_157715.1	chrX	68044756	68044956	-	1	NA	NA	NA	-34677	NR_030575	100124449		NR_030575	ENSMUSG00000106233	Mir509	Mirn509|mmu-mir-509	microRNA 509	ncRNA	0.015000	0.348259	
mm_49422.1	chr6	29245950	29246150	+	1	NA	NA	NA	-26438	NM_001190461	69573	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.040000	0.497512	
mm_166085.1	chr4	138836351	138836551	-	1	NA	NA	NA	4575	NM_001082531	18780	Mm.4675	NM_011108	ENSMUSG00000058908	Pla2g2a	EF|Mom1|Pla2|sPLA2|sPla2-IIA	phospholipase A2, group IIA (platelets, synovial fluid)	protein-coding	0.025000	0.582090	
mm_154095.1	chr19	56952050	56952250	-	1	NA	NA	NA	56425	NM_146102	226250	Mm.226284	NM_146102	ENSMUSG00000025083	Afap1l2	AU041783|C86904|mKIAA1914	actin filament associated protein 1-like 2	protein-coding	0.000000	0.412935	
mm_139310.1	chr17	48351612	48351812	+	1	NA	NA	NA	5311	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.005000	0.557214	
mm_140226.1	chr17	83985569	83985769	+	1	NA	NA	NA	-12883	NR_130994	78148	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.040000	0.487562	
mm_114057.1	chr13	54371326	54371526	+	1	NA	NA	NA	77	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.075000	0.656716	
mm_95487.1	chr11	51584690	51584890	+	1	NA	NA	NA	33	NM_028398	72947	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.115000	0.696517	
mm_51374.1	chr6	72956599	72956799	+	1	NA	NA	NA	1533	NM_001039392	19240	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.025000	0.587065	
mm_61465.1	chr7	75609959	75610159	+	1	NA	NA	NA	154525	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.020000	0.507463	
mm_116484.1	chr13	44018488	44018688	-	1	NA	NA	NA	-102579	NR_045285	328235	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA	0.025000	0.467662	
mm_148054.1	chr18	71996432	71996632	-	1	NA	NA	NA	354537	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.000000	0.238806	-100(CCATTAATAGAT,+,0.00)
mm_167923.1	chrX	102707754	102707954	+	1	NA	NA	NA	-27	NM_001039116	632708	Mm.297715	NM_001039116	ENSMUSG00000073027	Dmrtc1b	Dmrt8.2|Gm714	DMRT-like family C1b	protein-coding	0.030000	0.557214	
mm_146229.1	chr18	77082085	77082285	+	1	NA	NA	NA	16505	NM_001164168	17344	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0.010000	0.303483	
mm_164199.1	chr15	79761624	79761824	+	1	NA	NA	NA	12743	NM_017470	54152	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	0.040000	0.611940	
mm_93454.1	chr10	110126792	110126992	-	1	NA	NA	NA	-126673	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.000000	0.383085	
mm_159306.1	chr2	180027893	180028093	+	1	NA	NA	NA	3006	NM_177727	241846	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	0.040000	0.592040	
mm_28253.1	chr3	88548188	88548388	-	1	NA	NA	NA	-9	NM_016899	53868	Mm.26994	NM_016899	ENSMUSG00000008601	Rab25	AV012978	RAB25, member RAS oncogene family	protein-coding	0.025000	0.582090	
mm_125600.1	chr15	59653317	59653517	+	1	NA	NA	NA	4763	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.020000	0.472637	-33(AGCTTTATAAGA,-,0.00)
mm_88450.1	chr10	77550801	77551001	+	1	NA	NA	NA	20553	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.020000	0.547264	
mm_84569.1	chr9	68969430	68969630	-	1	NA	NA	NA	204184	NR_033299	320440	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.025000	0.502488	
mm_74697.1	chr8	15327185	15327385	-	1	NA	NA	NA	269632	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.005000	0.497512	
mm_41929.1	chr5	105699893	105700093	+	1	NA	NA	NA	24	NM_001122768	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.120000	0.726368	
mm_143955.1	chr17	86880343	86880543	-	1	NA	NA	NA	-36905	NM_001277980	78469	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	0.020000	0.457711	
mm_53589.1	chr6	137754464	137754664	+	1	NA	NA	NA	-13	NM_172733	232449	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0.060000	0.646766	
mm_45805.1	chr5	87568971	87569171	-	1	NA	NA	NA	-65	NM_016771	53315	Mm.6824	NM_016771	ENSMUSG00000029273	Sult1d1	5033411P13Rik|AI987815|ST1d1|SULT-N|Sultn	sulfotransferase family 1D, member 1	protein-coding	0.005000	0.368159	
mm_97153.1	chr11	75463695	75463895	+	1	NA	NA	NA	79	NR_029739	387141		NR_029739	ENSMUSG00000065529	Mir22	Mirn22|mmu-mir-22	microRNA 22	ncRNA	0.015000	0.577114	
mm_80903.1	chr9	100504488	100504688	+	1	NA	NA	NA	2268	NM_001324530	17973	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0.000000	0.323383	
mm_32833.1	chr4	117673910	117674110	+	1	NA	NA	NA	8215	NM_023178	66233	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	0.005000	0.621891	
mm_30950.1	chr4	33209146	33209346	+	1	NA	NA	NA	255	NM_177774	272009	Mm.156636	NM_177774	ENSMUSG00000054679	Srsf12	B830039L16|Sfrs13b|Srrp|Srsf13b	serine/arginine-rich splicing factor 12	protein-coding	0.130000	0.761194	
mm_95146.1	chr11	35544444	35544644	+	1	NA	NA	NA	-72272	NR_029799	723924		NR_029799	ENSMUSG00000065583	Mir218-2	Mirn218-2|mir-218-2	microRNA 218-2	ncRNA	0.035000	0.542289	
mm_165223.1	chr2	50066425	50066625	+	1	NA	NA	NA	96	NM_177139	320343	Mm.130607	NM_177139	ENSMUSG00000050447	Lypd6	E130115E03Rik	LY6/PLAUR domain containing 6	protein-coding	0.120000	0.736318	
mm_64477.1	chr7	143053430	143053630	+	1	NA	NA	NA	156	NR_110355	97423	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	0.055000	0.651741	
mm_58044.1	chr6	136827668	136827868	-	1	NA	NA	NA	448	NM_021714	60321	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	0.135000	0.696517	
mm_167367.1	chr8	88243879	88244079	+	1	NA	NA	NA	-28424	NM_007406	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.015000	0.353234	
mm_28108.1	chr3	86548381	86548581	-	1	NA	NA	NA	-198	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.025000	0.437811	
mm_160019.1	chr6	129740428	129740628	-	1	NA	NA	NA	-44	NM_177155	320407	Mm.123265	NM_177155	ENSMUSG00000043932	Klri2	A530090P03Rik	killer cell lectin-like receptor family I member 2	protein-coding	0.000000	0.402985	
mm_149954.1	chr19	28578095	28578295	+	1	NA	NA	NA	-100029	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.005000	0.517413	
mm_1938.1	chr1	86154687	86154887	+	1	NA	NA	NA	7	NM_001310702	78795	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.090000	0.671642	
mm_142948.1	chr17	56109650	56109850	-	1	NA	NA	NA	52	NM_020568	57435	Mm.12966	NM_020568	ENSMUSG00000002831	Plin4	S3-12|mKIAA1881	perilipin 4	protein-coding	0.020000	0.646766	-69(GACCCTATAAGG,-,0.00),-67(CCCTATAAGGCT,+,0.00)
mm_101867.1	chr11	48891542	48891742	-	1	NA	NA	NA	10510	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.000000	0.492537	-53(CACTATAAAGGG,-,0.00)
mm_147685.1	chr18	60723606	60723806	-	1	NA	NA	NA	-10317	NM_008306	15531	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.010000	0.527363	
mm_40128.1	chr5	34999014	34999214	+	1	NA	NA	NA	36	NM_001163512	71729	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.010000	0.517413	
mm_61948.1	chr7	90194238	90194438	+	1	NA	NA	NA	64106	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.010000	0.358209	
mm_50130.1	chr6	41541962	41542162	+	1	NA	NA	NA	20286	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.542289	
mm_145365.1	chr18	56707865	56708065	+	1	NA	NA	NA	152	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.140000	0.711443	
mm_24279.1	chr3	89224978	89225178	+	1	NA	NA	NA	2120	NR_030579	100124470		NR_030579	ENSMUSG00000076255	Mir92b	Mirn92b|mir-92b|mmu-mir-92b	microRNA 92b	ncRNA	0.010000	0.562189	
mm_120379.1	chr14	64588184	64588384	+	1	NA	NA	NA	169	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA	0.045000	0.587065	
mm_108332.1	chr12	80109796	80109996	+	1	NA	NA	NA	3117	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.045000	0.646766	
mm_165639.1	chr3	74588496	74588696	+	1	NA	NA	NA	555176	NM_001310529	213234	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding	0.000000	0.303483	
mm_80426.1	chr9	77920302	77920502	+	1	NA	NA	NA	3037	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.005000	0.462687	
mm_78658.1	chr9	40457598	40457798	+	1	NA	NA	NA	-1934	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.020000	0.487562	
mm_101633.1	chr11	36432513	36432713	-	1	NA	NA	NA	-452524	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.040000	0.477612	-90(CCTTTTAGAGTC,+,0.00)
mm_157295.1	chrX	20920819	20921019	-	1	NA	NA	NA	-1	NM_013680	20964	Mm.439844	NM_013680	ENSMUSG00000037217	Syn1	Syn-1|Syn1-S	synapsin I	protein-coding	0.115000	0.716418	
mm_87256.1	chr10	41519405	41519605	+	1	NA	NA	NA	5	NM_016898	53599	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.135000	0.736318	
mm_52704.1	chr6	119349629	119349829	+	1	NA	NA	NA	-18963	NM_172492	211187	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	0.025000	0.507463	
mm_164519.1	chr16	97004020	97004220	+	1	NA	NA	NA	166615	NM_031174	13508	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	Down syndrome cell adhesion molecule	protein-coding	0.005000	0.487562	
mm_19385.1	chr2	91236845	91237045	-	1	NA	NA	NA	121	NM_028119	107986	Mm.389334	NM_028119	ENSMUSG00000002109	Ddb2	2610043A19Rik	damage specific DNA binding protein 2	protein-coding	0.080000	0.616915	
mm_52017.1	chr6	94592253	94592453	+	1	NA	NA	NA	14062	NR_106008	102466992		NR_106008	ENSMUSG00000098531	Mir7041	Gm27872|mmu-mir-7041	microRNA 7041	ncRNA	0.015000	0.452736	
mm_96026.1	chr11	59548568	59548768	+	1	NA	NA	NA	5982	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.035000	0.542289	
mm_110460.1	chr12	51691984	51692184	-	1	NA	NA	NA	-170	NM_052973	94186	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.105000	0.696517	-78(GCGTAGAAAAGC,-,0.00)
mm_89251.1	chr10	87859088	87859288	+	1	NA	NA	NA	136	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.010000	0.417910	
mm_89477.1	chr10	93551730	93551930	+	1	NA	NA	NA	11198	NM_175488	237465	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	0.015000	0.442786	
mm_96190.1	chr11	61956686	61956886	+	1	NA	NA	NA	23	NM_001310526	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.110000	0.681592	
mm_170751.1	chr2	156347930	156348130	-	1	NA	NA	NA	-35326	NM_020255	19018	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	0.030000	0.487562	
mm_6891.1	chr1	84696014	84696214	-	1	NA	NA	NA	107	NM_152915	227325	Mm.292560	NM_152915	ENSMUSG00000036766	Dner	A930026D19Rik|BET|Bret	delta/notch-like EGF repeat containing	protein-coding	0.060000	0.616915	
mm_12288.1	chr2	69022870	69023070	+	1	NA	NA	NA	-112830	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.010000	0.358209	
mm_170308.1	chr18	34952365	34952565	-	1	NA	NA	NA	1886	NM_010481	15526	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.005000	0.432836	
mm_128613.1	chr15	58823493	58823693	-	1	NA	NA	NA	-166	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.125000	0.766169	
mm_168569.1	chr11	69671215	69671415	-	1	NA	NA	NA	1108	NM_144958	13681	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0.085000	0.711443	
mm_157573.1	chrX	52613804	52614004	-	1	NA	NA	NA	70	NM_016697	14734	Mm.22515	NM_016697	ENSMUSG00000055653	Gpc3	OCI-5	glypican 3	protein-coding	0.090000	0.671642	
mm_102118.1	chr11	53300344	53300544	-	1	NA	NA	NA	35	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.125000	0.661692	
mm_113139.1	chr13	24638397	24638597	+	1	NA	NA	NA	-151	NM_001080381	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.045000	0.601990	
mm_2304.1	chr1	91539938	91540138	+	1	NA	NA	NA	-527	NM_001039126	65247	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	0.035000	0.597015	
mm_41206.1	chr5	88531870	88532070	+	1	NA	NA	NA	-4073	NM_152839	16069	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	0.005000	0.422886	-34(CAATATATAAGG,-,0.00)
mm_96373.1	chr11	67237709	67237909	+	1	NA	NA	NA	-3	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.010000	0.522388	-33(GCCTCTATAAAA,-,0.00),-31(CTCTATAAAAGT,-,0.00),14(AACCCTTAAAGG,-,0.00)
mm_55526.1	chr6	70718777	70718977	-	1	NA	NA	NA	73298	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.005000	0.427861	
mm_157175.1	chrX	9655076	9655276	-	1	NA	NA	NA	7807	NM_025975	67117	Mm.29150	NM_025975	ENSMUSG00000031176	Dynlt3	2310075M16Rik|AU042796|Tcte1l	dynein light chain Tctex-type 3	protein-coding	0.025000	0.472637	
mm_171010.1	chr2	83430567	83430767	+	1	NA	NA	NA	-213911	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.065000	0.656716	
mm_69912.1	chr7	141691295	141691495	-	1	NA	NA	NA	1055	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.020000	0.532338	
mm_167021.1	chr7	65623903	65624103	-	1	NA	NA	NA	-20895	NM_172310	272396	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0.020000	0.407960	
mm_83295.1	chr9	43224996	43225196	-	1	NA	NA	NA	14720	NM_178644	102644	Mm.246479	NM_178644	ENSMUSG00000032014	Oaf	AL024221|D130038B21Rik|D9Ucla1	out at first homolog	protein-coding	0.025000	0.572139	
mm_54912.1	chr6	47788083	47788283	-	1	NA	NA	NA	15469	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.010000	0.407960	
mm_139376.1	chr17	51832929	51833129	+	1	NA	NA	NA	261	NM_001163632	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.130000	0.791045	
mm_29512.1	chr3	116423402	116423602	-	1	NA	NA	NA	530	NM_001080818	229776	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.070000	0.671642	
mm_138523.1	chr17	35241670	35241870	+	1	NA	NA	NA	24	NM_019693	53817	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	0.120000	0.696517	
mm_79498.1	chr9	57130668	57130868	+	1	NA	NA	NA	-9	NM_028636	73744	Mm.30110	NM_028636	ENSMUSG00000032295	Man2c1	1110025H24Rik	mannosidase, alpha, class 2C, member 1	protein-coding	0.080000	0.606965	
mm_74071.1	chr8	122436785	122436985	+	1	NA	NA	NA	-3945	NM_007806	13057	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.060000	0.651741	
mm_77487.1	chr8	122567611	122567811	-	1	NA	NA	NA	-304	NM_026014	67177	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0.100000	0.641791	
mm_1591.1	chr1	74351880	74352080	+	1	NA	NA	NA	-10128	NM_001033345	241112	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0.015000	0.582090	-66(ATGCATAAAAGC,-,0.00)
mm_48385.1	chr5	139808413	139808613	-	1	NA	NA	NA	4730	NM_144914	231832	Mm.482655	NM_144914	ENSMUSG00000036687	Tmem184a	Sdmg1	transmembrane protein 184a	protein-coding	0.060000	0.621891	
mm_136134.1	chr16	86806414	86806614	-	1	NA	NA	NA	-547671	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0.005000	0.512438	
mm_54266.1	chr6	28421611	28421811	-	1	NA	NA	NA	13	NM_028900	74375	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	0.080000	0.641791	
mm_138663.1	chr17	35873732	35873932	+	1	NA	NA	NA	-5946	NM_026987	69192	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	0.025000	0.611940	
mm_168463.1	chr1	145965672	145965872	-	1	NA	NA	NA	-529894	NM_153539	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.055000	0.532338	
mm_135889.1	chr16	64852432	64852632	-	1	NA	NA	NA	447	NM_178647	106143	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.185000	0.870647	
mm_7131.1	chr1	91052740	91052940	-	1	NA	NA	NA	-604	NM_001310732	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.090000	0.676617	
mm_103412.1	chr11	75460380	75460580	-	1	NA	NA	NA	-1059	NR_030711	100042498	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0.010000	0.477612	
mm_3037.1	chr1	134037443	134037643	+	1	NA	NA	NA	28	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.020000	0.527363	80(TTCTATAAAGAG,-,0.00)
mm_69467.1	chr7	133702398	133702598	-	1	NA	NA	NA	2	NM_001302087	22276	Mm.3160	NM_009479	ENSMUSG00000030979	Uros	AI415298|UROIIIS|Uros3	uroporphyrinogen III synthase	protein-coding	0.040000	0.517413	
mm_37389.1	chr4	121017073	121017273	-	1	NA	NA	NA	74	NM_133716	69780	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	0.070000	0.681592	
mm_28588.1	chr3	94388058	94388258	-	1	NA	NA	NA	10726	NR_121656	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.020000	0.601990	
mm_85989.1	chr9	112187777	112187977	-	1	NA	NA	NA	49	NM_001177615	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.045000	0.532338	
mm_7864.1	chr1	132616910	132617110	-	1	NA	NA	NA	25848	NM_001160316	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	0.005000	0.427861	
mm_21580.1	chr2	164237136	164237336	-	1	NA	NA	NA	1105	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.000000	0.383085	
mm_122354.1	chr14	38898097	38898297	-	1	NA	NA	NA	-105	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA	0.000000	0.442786	-34(GATTATATAAGC,-,0.00)
mm_80560.1	chr9	83548250	83548450	+	1	NA	NA	NA	12	NM_172507	212531	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.145000	0.706468	
mm_113200.1	chr13	24943501	24943701	+	1	NA	NA	NA	449	NM_008156	14756	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0.015000	0.522388	67(TGCTCTAAAAGC,-,0.00)
mm_67594.1	chr7	83697466	83697666	-	1	NA	NA	NA	37924	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.000000	0.427861	-69(TGTCTTAAAAGG,-,0.00),-67(TCTTAAAAGGGG,+,0.00)
mm_54969.1	chr6	48737017	48737217	-	1	NA	NA	NA	-1930	NM_175860	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.000000	0.422886	
mm_49083.1	chr6	6862895	6863095	+	1	NA	NA	NA	-339	NM_010057	13396	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding	0.040000	0.547264	
mm_20954.1	chr2	151741075	151741275	-	1	NA	NA	NA	135	NM_212446	228769	Mm.146984	NM_144889	ENSMUSG00000032869	Psmf1	AW048666|BC012260|PI31	proteasome (prosome, macropain) inhibitor subunit 1	protein-coding	0.105000	0.621891	
mm_839.1	chr1	51585326	51585526	+	1	NA	NA	NA	-107027	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.005000	0.442786	
mm_84844.1	chr9	78378583	78378783	-	1	NA	NA	NA	-95	NM_026480	67968	Mm.26883	NM_026480	ENSMUSG00000032346	Ooep	2410146L05Rik|Floped|Moep19|Sddr	oocyte expressed protein	protein-coding	0.050000	0.606965	
mm_49201.1	chr6	15364391	15364591	+	1	NA	NA	NA	178985	NM_001286607	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.000000	0.318408	
mm_155250.1	chrX	57223670	57223870	+	1	NA	NA	NA	11627	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.000000	0.432836	
mm_61224.1	chr7	64501595	64501795	+	1	NA	NA	NA	-11	NM_007461	11784	Mm.4657	NM_007461	ENSMUSG00000030519	Apba2	X11-like|X11L|XllL|mXllL	amyloid beta (A4) precursor protein-binding, family A, member 2	protein-coding	0.080000	0.701493	
mm_11376.1	chr2	31143328	31143528	+	1	NA	NA	NA	-1420	NM_001038700	14269	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.010000	0.487562	
mm_118919.1	chr14	26766349	26766549	+	1	NA	NA	NA	-96603	NM_178668	211948	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	0.030000	0.472637	-33(GGATATTAAAGC,-,0.00)
mm_82077.1	chr9	122999079	122999279	+	1	NA	NA	NA	-22147	NM_025339	66079	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	0.015000	0.298507	
mm_120055.1	chr14	56672366	56672566	+	1	NA	NA	NA	4218	NM_023773	75339	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	0.005000	0.368159	-54(ATCTTTATAAAG,-,0.00),-52(CTTTATAAAGTT,+,0.00)
mm_113389.1	chr13	33039888	33040088	+	1	NA	NA	NA	12574	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	0.005000	0.497512	-35(CTCCATAAAGGC,-,0.00)
mm_80025.1	chr9	68640499	68640699	+	1	NA	NA	NA	-13187	NM_001289917	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.005000	0.447761	-22(GAGTTTTAAAGG,-,0.00)
mm_143204.1	chr17	62815008	62815208	-	1	NA	NA	NA	66209	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.020000	0.343284	
mm_14022.1	chr2	122150895	122151095	+	1	NA	NA	NA	3308	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.030000	0.472637	
mm_67908.1	chr7	99695765	99695965	-	1	NA	NA	NA	-56	NM_001252531	101488	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0.015000	0.557214	
mm_18046.1	chr2	39065371	39065571	-	1	NA	NA	NA	70	NR_110968	76899	Mm.131098	NM_029793	ENSMUSG00000026754	Golga1	0710001G09Rik|2210418B03Rik|AW107649|Golgi97|awag|golgin-97	golgi autoantigen, golgin subfamily a, 1	protein-coding	0.105000	0.701493	
mm_120829.1	chr14	75176497	75176697	+	1	NA	NA	NA	40172	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.005000	0.507463	
mm_88039.1	chr10	67537111	67537311	+	1	NA	NA	NA	-658	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.025000	0.412935	
mm_168366.1	chr11	17221236	17221436	+	1	NA	NA	NA	9443	NM_178909	103784	Mm.298132	NM_178909	ENSMUSG00000078970	Wdr92	AI553587|HZGJ	WD repeat domain 92	protein-coding	0.025000	0.462687	
mm_74790.1	chr8	22185731	22185931	-	1	NA	NA	NA	-12	NM_001004140	80986	Mm.22448	NM_001004140	ENSMUSG00000037725	Ckap2	AI461656|AW228814|LB1	cytoskeleton associated protein 2	protein-coding	0.105000	0.641791	
mm_39211.1	chr4	156053814	156054014	-	1	NA	NA	NA	73	NR_029958	723865		NR_029958	ENSMUSG00000065427	Mir429	Mirn429|mir-429|mmu-mir-429	microRNA 429	ncRNA	0.025000	0.527363	
mm_23091.1	chr3	37062946	37063146	+	1	NA	NA	NA	-610	NM_009350	21744	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	0.015000	0.537313	
mm_129493.1	chr15	78802933	78803133	-	1	NA	NA	NA	9	NM_130859	105844	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	0.120000	0.791045	
mm_164391.1	chr16	33169673	33169873	+	1	NA	NA	NA	-15298	NM_176840	106326	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.020000	0.547264	
mm_24885.1	chr3	96104435	96104635	+	1	NA	NA	NA	8	NM_001025614	229603	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0.125000	0.736318	
mm_90930.1	chr10	12868109	12868309	-	1	NA	NA	NA	-6474	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.050000	0.666667	
mm_59399.1	chr7	26766614	26766814	+	1	NA	NA	NA	9572	NM_007814	13090	Mm.14098	NM_007814	ENSMUSG00000066704	Cyp2b19	CYPIIB19	cytochrome P450, family 2, subfamily b, polypeptide 19	protein-coding	0.015000	0.472637	
mm_170218.1	chr17	76296675	76296875	+	1	NA	NA	NA	435752	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	0.020000	0.507463	-32(CCCCTTATAAGC,-,0.00),-30(CCTTATAAGCGC,+,0.00)
mm_155587.1	chrX	79904261	79904461	+	1	NA	NA	NA	-232926	NM_028025	71967	Mm.379207	NM_028025	ENSMUSG00000046942	Mageb16	2410003J06Rik	melanoma antigen family B, 16	protein-coding	0.025000	0.467662	-55(GGGTCTATAGGG,-,0.00)
mm_54194.1	chr6	24527930	24528130	-	1	NA	NA	NA	-114	NM_080847	78910	Mm.160150	NM_080847	ENSMUSG00000029685	Asb15	4930400E23Rik|Asb-15	ankyrin repeat and SOCS box-containing 15	protein-coding	0.015000	0.422886	-50(CCTCATAAACAC,+,0.00)
mm_47846.1	chr5	134386117	134386317	-	1	NA	NA	NA	70045	NM_001081465	57080	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.005000	0.452736	
mm_151309.1	chr19	55743323	55743523	+	1	NA	NA	NA	1613	NM_001142923	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.020000	0.432836	
mm_46473.1	chr5	105131230	105131430	-	1	NA	NA	NA	8222	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.432836	
mm_91743.1	chr10	49231794	49231994	-	1	NA	NA	NA	-136051	NR_046212	100418235	Mm.185993	NR_046212		C130030K03Rik	-	proteasome (prosome, macropain) subunit, alpha type 6 pseudogene	pseudo	0.010000	0.363184	
mm_22728.1	chr3	19644483	19644683	+	1	NA	NA	NA	123	NM_001081281	381485	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0.015000	0.467662	
mm_60550.1	chr7	44480865	44481065	+	1	NA	NA	NA	-3552	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.442786	
mm_36153.1	chr4	59549220	59549420	-	1	NA	NA	NA	44	NM_178164	230257	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0.150000	0.786070	
mm_134325.1	chr16	16358418	16358618	-	1	NA	NA	NA	57	NM_001276341	74006	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	0.080000	0.592040	
mm_90836.1	chr10	8511524	8511724	-	1	NA	NA	NA	7201	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.015000	0.412935	
mm_133094.1	chr16	64851857	64852057	+	1	NA	NA	NA	-128	NM_178647	106143	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.125000	0.696517	
mm_76686.1	chr8	94098265	94098465	-	1	NA	NA	NA	446	NM_026116	67378	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	0.075000	0.621891	
mm_162226.1	chrX	147993009	147993209	+	1	NA	NA	NA	116	NM_001122734	100039934	Mm.474426	NM_001122734	ENSMUSG00000095621	Gm15085	OTTMUSG00000018973	predicted gene 15085	protein-coding	0.015000	0.527363	85(GGCTCTAAATGG,-,0.00)
mm_21384.1	chr2	157501233	157501433	-	1	NA	NA	NA	-58745	NM_001291129	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.015000	0.467662	-92(CTTTTTATACGA,+,0.00)
mm_170146.1	chr17	45441971	45442171	+	1	NA	NA	NA	8240	NR_130961	105246278	Mm.206588	NR_130960	ENSMUSG00000097119	B230354K17Rik	-	RIKEN cDNA B230354K17 gene	ncRNA	0.025000	0.497512	
mm_45309.1	chr5	65428260	65428460	-	1	NA	NA	NA	7482	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.005000	0.417910	-97(CCTTTTATGCCC,+,0.00)
mm_44137.1	chr5	150118555	150118755	+	1	NA	NA	NA	99980	NM_001289566	140498	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	0.145000	0.786070	
mm_99288.1	chr11	101322482	101322682	+	1	NA	NA	NA	-2481	NM_178932	237940	Mm.302277	NM_178932	ENSMUSG00000078651	Aoc2	RAO	amine oxidase, copper containing 2 (retina-specific)	protein-coding	0.005000	0.472637	
mm_14925.1	chr2	151488504	151488704	+	1	NA	NA	NA	-5578	NM_001291074	386649	Mm.419479	NM_198326	ENSMUSG00000027455	Nsfl1c	Munc-18c|Stxbp3a|p47	NSFL1 (p97) cofactor (p47)	protein-coding	0.000000	0.288557	-62(TCTTTTATGACC,+,0.00),70(TTCTATAAATGG,-,0.00)
mm_142210.1	chr17	36995410	36995610	-	1	NA	NA	NA	-5653	NM_001168502	22715	Mm.305561	NM_009559	ENSMUSG00000036036	Zfp57	G19|Zfp-57	zinc finger protein 57	protein-coding	0.010000	0.482587	
mm_114888.1	chr13	94301369	94301569	+	1	NA	NA	NA	-15638	NM_001346609	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.025000	0.442786	
mm_26114.1	chr3	137626533	137626733	+	1	NA	NA	NA	2961	NM_030143	73284	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	0.000000	0.402985	-30(CCACTTTAAAGG,-,0.00),-29(CACTTTAAAGGC,-,0.00)
mm_137321.1	chr17	24896409	24896609	+	1	NA	NA	NA	9	NM_019730	79059	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	0.065000	0.691542	-49(GTCCTTTAAGGG,-,0.00),-47(CCTTTAAGGGAG,+,0.00)
mm_121482.1	chr14	121035716	121035916	+	1	NA	NA	NA	242	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.165000	0.825871	
mm_12626.1	chr2	74704439	74704639	+	1	NA	NA	NA	-76	NM_001290731	15437	Mm.280673	NM_008276	ENSMUSG00000027102	Hoxd8	4921540P06Rik|AI047735|Hox-4.3|Hox-5.4	homeobox D8	protein-coding	0.025000	0.437811	
mm_145127.1	chr18	44539368	44539568	+	1	NA	NA	NA	-122197	NR_026853	626275	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	0.010000	0.442786	
mm_121004.1	chr14	79515623	79515823	+	1	NA	NA	NA	49	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.015000	0.407960	
mm_99299.1	chr11	101347916	101348116	+	1	NA	NA	NA	17410	NM_009675	11754	Mm.67281	NM_009675	ENSMUSG00000019326	Aoc3	SSAO|VAP1	amine oxidase, copper containing 3	protein-coding	0.010000	0.432836	31(TCTTTAATAGAC,+,0.00)
mm_30119.1	chr3	141211691	141211891	-	1	NA	NA	NA	564	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding	0.080000	0.557214	
mm_56409.1	chr6	97205461	97205661	-	1	NA	NA	NA	86	NM_001301858	22200	Mm.277626	NM_011666	ENSMUSG00000030061	Uba3	A830034N06Rik|AI256736|AI848246|AW546539|Ube1c	ubiquitin-like modifier activating enzyme 3	protein-coding	0.095000	0.686567	
mm_26033.1	chr3	135462884	135463084	+	1	NA	NA	NA	-22627	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.010000	0.343284	
mm_114787.1	chr13	89227370	89227570	+	1	NA	NA	NA	-313166	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.000000	0.273632	-78(CCATTTATAGTG,+,0.00)
mm_96881.1	chr11	70237921	70238121	+	1	NA	NA	NA	-107	NM_145758	104457	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	0.080000	0.651741	
mm_85022.1	chr9	88438789	88438989	-	1	NA	NA	NA	62	NM_172926	244962	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0.090000	0.701493	
mm_102450.1	chr11	59787218	59787418	-	1	NA	NA	NA	-96	NR_110894	194908	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	0.090000	0.676617	
mm_58839.1	chr7	16838033	16838233	+	1	NA	NA	NA	-4769	NM_001252458	101540	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.015000	0.592040	
mm_36489.1	chr4	83203677	83203877	-	1	NA	NA	NA	120412	NM_027238	69863	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.005000	0.447761	
mm_119109.1	chr14	31001515	31001715	+	1	NA	NA	NA	51	NM_026911	69019	Mm.28852	NM_026911	ENSMUSG00000021917	Spcs1	1810004F21Rik	signal peptidase complex subunit 1 homolog (S. cerevisiae)	protein-coding	0.105000	0.686567	
mm_108885.1	chr12	99965837	99966037	+	1	NA	NA	NA	1438	NM_001164427	217826	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.095000	0.701493	
mm_27349.1	chr3	50414868	50415068	-	1	NA	NA	NA	28645	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.412935	
mm_163386.1	chr12	54374256	54374456	+	1	NA	NA	NA	16962	NR_033689	665239	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.015000	0.497512	
mm_20255.1	chr2	126597940	126598140	-	1	NA	NA	NA	20638	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.020000	0.517413	
mm_66573.1	chr7	45333642	45333842	-	1	NA	NA	NA	38	NM_175130	68667	Mm.439890	NM_175130	ENSMUSG00000038260	Trpm4	1110030C19Rik|AW047689|LTRPC4|LTrpC-4|TRPM4B	transient receptor potential cation channel, subfamily M, member 4	protein-coding	0.095000	0.711443	
mm_65284.1	chr7	24435366	24435566	-	1	NA	NA	NA	10216	NM_199013	210145	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.015000	0.616915	
mm_41140.1	chr5	87887383	87887583	+	1	NA	NA	NA	1788	NM_027128	69592	Mm.389652	NM_027128	ENSMUSG00000009580	Odam	2310011G06Rik|APIN	odontogenic, ameloblast asssociated	protein-coding	0.005000	0.527363	
mm_4569.1	chr1	177711148	177711348	+	1	NA	NA	NA	-18566	NM_027077	69428	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.005000	0.442786	
mm_13961.1	chr2	121413846	121414046	+	1	NA	NA	NA	44	NM_007952	14827	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	0.135000	0.741294	
mm_124875.1	chr15	10223718	10223918	+	1	NA	NA	NA	-88	NM_001253781	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.000000	0.442786	
mm_169357.1	chr14	27141752	27141952	+	1	NA	NA	NA	-2141	NM_001289686	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.015000	0.557214	
mm_27802.1	chr3	75956155	75956355	-	1	NA	NA	NA	694	NM_175193	73124	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.100000	0.641791	
mm_172565.1	chr8	110846646	110846846	-	1	NA	NA	NA	57	NM_133953	101943	Mm.236123	NM_133953	ENSMUSG00000033732	Sf3b3	1810061H24Rik|5730409A01Rik|AA409318|D8Ertd633e|RSE1|SAP130|mKIAA0017	splicing factor 3b, subunit 3	protein-coding	0.085000	0.582090	
mm_137114.1	chr17	22424169	22424369	+	1	NA	NA	NA	67	NM_001331198	74149	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	0.035000	0.527363	
mm_111703.1	chr12	103693941	103694141	-	1	NA	NA	NA	648	NM_001164742	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding	0.000000	0.492537	
mm_136171.1	chr16	88627563	88627763	-	1	NA	NA	NA	3	NM_027173	69699	Mm.158296	NM_027173	ENSMUSG00000045331	2310079G19Rik	-	RIKEN cDNA 2310079G19 gene	protein-coding	0.020000	0.467662	-35(AGGTATATAAAG,-,0.00)
mm_56457.1	chr6	98342550	98342750	-	1	NA	NA	NA	104	NM_001128092	330390	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0.010000	0.572139	57(TCCTTTAGAGAC,+,0.00)
mm_78207.1	chr9	21484464	21484664	+	1	NA	NA	NA	12000	NR_029585	387194		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.005000	0.437811	
mm_156654.1	chrX	157702773	157702973	+	1	NA	NA	NA	3900	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.010000	0.432836	
mm_62476.1	chr7	101863687	101863887	+	1	NA	NA	NA	-6597	NM_001303239	14276	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0.010000	0.467662	
mm_170043.1	chr17	24589072	24589272	-	1	NA	NA	NA	39222	NM_013630	18763	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystic kidney disease 1 homolog	protein-coding	0.010000	0.383085	
mm_90852.1	chr10	8813907	8814107	-	1	NA	NA	NA	72063	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.015000	0.368159	-98(GGCTTTTTAGGA,-,0.00),23(CTTTTAATAGAG,+,0.00)
mm_136684.1	chr17	6746213	6746413	+	1	NA	NA	NA	36467	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.035000	0.547264	
mm_109003.1	chr12	103314853	103315053	+	1	NA	NA	NA	-6	NM_001195726	100504156	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	0.055000	0.651741	
mm_78439.1	chr9	32095708	32095908	+	1	NA	NA	NA	-20328	NM_001195632	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.010000	0.437811	
mm_157420.1	chrX	38564099	38564299	-	1	NA	NA	NA	11997	NM_028288	72584	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	0.020000	0.527363	
mm_162204.1	chrX	135494517	135494717	+	1	NA	NA	NA	11	NM_001099321	100040635	Mm.336240	NM_001099321	ENSMUSG00000079432	Gm15023	OTTMUSG00000018782	predicted gene 15023	protein-coding	0.040000	0.532338	
mm_169733.1	chr15	82249597	82249797	-	1	NA	NA	NA	-2700	NR_037697	76505	Mm.23023	NR_037697	ENSMUSG00000068099	1500009C09Rik	-	RIKEN cDNA 1500009C09 gene	ncRNA	0.010000	0.447761	
mm_11787.1	chr2	42530567	42530767	+	1	NA	NA	NA	-83099	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.010000	0.363184	
mm_97127.1	chr11	74926776	74926976	+	1	NA	NA	NA	1004	NM_001002764	103677	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.010000	0.407960	
mm_166577.1	chr6	52233892	52234092	-	1	NA	NA	NA	947	NM_008263	15395	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0.070000	0.621891	
mm_44973.1	chr5	36816081	36816281	-	1	NA	NA	NA	14468	NM_008550	17160	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0.030000	0.552239	
mm_67215.1	chr7	74430153	74430353	-	1	NA	NA	NA	124527	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.000000	0.447761	
mm_172470.1	chr7	43607074	43607274	+	1	NA	NA	NA	5	NM_028913	74400	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	0.075000	0.562189	
mm_158599.1	chrX	151520892	151521092	-	1	NA	NA	NA	320	NM_001113354	320595	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	0.085000	0.686567	
mm_143131.1	chr17	57215063	57215263	-	1	NA	NA	NA	2065	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.015000	0.616915	
mm_6835.1	chr1	84230141	84230341	-	1	NA	NA	NA	-11280	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.015000	0.407960	
mm_121037.1	chr14	80000201	80000401	+	1	NA	NA	NA	-1	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding	0.020000	0.542289	
mm_107954.1	chr12	72441860	72442060	+	1	NA	NA	NA	94	NM_030070	78257	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	0.040000	0.601990	
mm_25720.1	chr3	122729622	122729822	+	1	NA	NA	NA	564	NM_153422	242202	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	0.060000	0.661692	
mm_139098.1	chr17	46910394	46910594	+	1	NA	NA	NA	9	NM_008938	19133	Mm.291370	NM_008938	ENSMUSG00000023978	Prph2	AOFMD|AVMD|Nmf193|PRPH|RP7|Rd-2|Rd2|Rds|Tspan22|rds	peripherin 2	protein-coding	0.035000	0.547264	
mm_83764.1	chr9	51974710	51974910	-	1	NA	NA	NA	-11208	NM_001301728	14148	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	0.005000	0.432836	-34(CCCTATAAATAC,-,0.00)
mm_155092.1	chrX	48146455	48146655	+	1	NA	NA	NA	119	NM_028773	74131	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	0.010000	0.552239	
mm_96896.1	chr11	70437839	70438039	+	1	NA	NA	NA	-316	NR_106064	102465670		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.020000	0.497512	
mm_111103.1	chr12	80924318	80924518	-	1	NA	NA	NA	29	NR_033786	67340	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.010000	0.512438	
mm_90734.1	chr10	5309328	5309528	-	1	NA	NA	NA	-114721	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.030000	0.457711	
mm_62405.1	chr7	101162933	101163133	+	1	NA	NA	NA	54258	NM_199012	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.005000	0.432836	
mm_79185.1	chr9	48403859	48404059	+	1	NA	NA	NA	41918	NM_172921	244853	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	0.010000	0.442786	
mm_32157.1	chr4	99960282	99960482	+	1	NA	NA	NA	30931	NM_028132	72157	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.015000	0.368159	6(CTCTTTATGCGC,+,0.00)
mm_144318.1	chr18	12651953	12652153	+	1	NA	NA	NA	8520	NM_028341	72747	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.000000	0.353234	
mm_58070.1	chr6	136923962	136924162	-	1	NA	NA	NA	-1882	NM_026983	69187	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding	0.015000	0.497512	
mm_39992.1	chr5	32492227	32492427	+	1	NA	NA	NA	33357	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.000000	0.318408	
mm_115303.1	chr13	112188656	112188856	+	1	NA	NA	NA	-99695	NM_001168403	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.025000	0.427861	
mm_30475.1	chr3	154710959	154711159	-	1	NA	NA	NA	-74	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.005000	0.482587	
mm_170656.1	chr2	104874551	104874751	+	1	NA	NA	NA	-11673	NM_177600	211936	Mm.416538	NM_177600	ENSMUSG00000045106	Ccdc73	2210415I11Rik|4931417A20|AV080665|BC095976	coiled-coil domain containing 73	protein-coding	0.000000	0.393035	
mm_130028.1	chr15	88900533	88900733	-	1	NA	NA	NA	38439	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.020000	0.522388	
mm_115164.1	chr13	107890549	107890749	+	1	NA	NA	NA	-585	NM_145456	67263	Mm.490418	NM_145456	ENSMUSG00000032846	Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.105000	0.691542	
mm_53130.1	chr6	125145169	125145369	+	1	NA	NA	NA	45	NM_001302779	320678	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	0.035000	0.606965	
mm_21063.1	chr2	152781854	152782054	-	1	NA	NA	NA	27781	NM_053091	84682	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit IV isoform 2	protein-coding	0.010000	0.547264	
mm_46268.1	chr5	99967161	99967361	-	1	NA	NA	NA	11677	NM_001077266	11991	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.010000	0.373134	11(TGCTATTTAAAG,-,0.00),13(CTATTTAAAGAG,+,0.00),32(GTGTAGATAAGG,-,0.00)
mm_119285.1	chr14	34378672	34378872	+	1	NA	NA	NA	3268	NM_153127	105450	Mm.272673	NM_153127	ENSMUSG00000041445	Mmrn2	AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1	multimerin 2	protein-coding	0.010000	0.587065	
mm_118790.1	chr14	24118846	24119046	+	1	NA	NA	NA	30069	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.005000	0.407960	
mm_155729.1	chrX	96163343	96163543	+	1	NA	NA	NA	67398	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.010000	0.492537	
mm_161719.1	chr17	26068913	26069113	-	1	NA	NA	NA	164	NM_001162868	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.075000	0.671642	
mm_152028.1	chr19	6077106	6077306	-	1	NA	NA	NA	-19	NM_001081041	68505	Mm.227361	NM_001081041	ENSMUSG00000024797	Vps51	1110014N23Rik|3110057M17Rik|AI837850|Ffr	VPS51 GARP complex subunit	protein-coding	0.040000	0.616915	
mm_140184.1	chr17	80997797	80997997	+	1	NA	NA	NA	53265	NM_026516	68027	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0.005000	0.308458	
mm_79120.1	chr9	46618660	46618860	+	1	NA	NA	NA	-294843	NR_015605	73040	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA	0.010000	0.487562	
mm_127772.1	chr15	3279220	3279420	-	1	NA	NA	NA	8343	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.010000	0.572139	
mm_106626.1	chr11	120856142	120856342	-	1	NA	NA	NA	-31695	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.015000	0.547264	
mm_65928.1	chr7	30314080	30314280	-	1	NA	NA	NA	-636	NM_001290565	233066	Mm.227325	NM_153577	ENSMUSG00000019737	Syne4	0610012K07Rik|AI428936|Nesp4	spectrin repeat containing, nuclear envelope family member 4	protein-coding	0.055000	0.597015	
mm_111073.1	chr12	80135647	80135847	-	1	NA	NA	NA	-2903	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.015000	0.557214	
mm_4886.1	chr1	188261887	188262087	+	1	NA	NA	NA	-851	NM_021408	22283	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Usherin|Ushrn	Usher syndrome 2A	protein-coding	0.005000	0.522388	
mm_152058.1	chr19	6307741	6307941	-	1	NA	NA	NA	1384	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.015000	0.592040	
mm_100216.1	chr11	116966633	116966833	+	1	NA	NA	NA	47870	NM_172948	268510	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	0.040000	0.582090	
mm_169716.1	chr15	77767405	77767605	-	1	NA	NA	NA	-12276	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.050000	0.636816	
mm_143379.1	chr17	67950846	67951046	-	1	NA	NA	NA	-6	NM_001347410	268970	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0.020000	0.472637	-50(CTTTTAATAGAG,+,0.00)
mm_122977.1	chr14	54983196	54983396	-	1	NA	NA	NA	-7520	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.005000	0.517413	
mm_3376.1	chr1	139171966	139172166	+	1	NA	NA	NA	194409	NR_108103	78229	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.000000	0.248756	
mm_12363.1	chr2	69750420	69750620	+	1	NA	NA	NA	27432	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.000000	0.308458	
mm_132724.1	chr16	43618855	43619055	+	1	NA	NA	NA	-21700	NR_030576	100124467		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.010000	0.447761	
mm_110929.1	chr12	76369595	76369795	-	1	NA	NA	NA	-135	NM_028356	109929	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0.140000	0.741294	
mm_43763.1	chr5	140704922	140705122	+	1	NA	NA	NA	11	NR_074085	231841	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	0.090000	0.651741	
mm_23873.1	chr3	83029106	83029306	+	1	NA	NA	NA	3053	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.015000	0.388060	
mm_15981.1	chr2	166793699	166793899	+	1	NA	NA	NA	32	NM_023815	76367	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.115000	0.681592	
mm_98732.1	chr11	96352773	96352973	+	1	NA	NA	NA	1241	NM_134032	103889	Mm.281153	NM_134032	ENSMUSG00000075588	Hoxb2	AI894218|Hox-2.8|Hoxbes2	homeobox B2	protein-coding	0.045000	0.552239	-12(TCTTTTAAGCCA,+,0.00)
mm_1415.1	chr1	67159288	67159488	+	1	NA	NA	NA	36361	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.422886	
mm_102524.1	chr11	60913696	60913896	-	1	NA	NA	NA	-4	NM_025294	24083	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	0.150000	0.686567	-82(GTCTCTTTAAGA,-,0.00),-79(TCTTTAAGAGAC,+,0.00)
mm_115465.1	chr13	119429169	119429369	+	1	NA	NA	NA	367	NM_145457	218693	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0.140000	0.820896	
mm_14318.1	chr2	129309995	129310195	+	1	NA	NA	NA	-123	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.015000	0.427861	-99(CTTTTTATAGTC,+,0.00)
mm_149910.1	chr19	25675119	25675319	+	1	NA	NA	NA	2808	NM_145831	226049	Mm.275572	NM_145831	ENSMUSG00000048138	Dmrt2	Terra	doublesex and mab-3 related transcription factor 2	protein-coding	0.000000	0.452736	
mm_99876.1	chr11	109425515	109425715	+	1	NA	NA	NA	-331	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.105000	0.631841	
mm_39441.1	chr5	16870149	16870349	+	1	NA	NA	NA	316348	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.010000	0.412935	
mm_14198.1	chr2	127182943	127183143	+	1	NA	NA	NA	25237	NM_198630	329509	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding	0.040000	0.512438	
mm_97405.1	chr11	77879487	77879687	+	1	NA	NA	NA	14285	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding	0.005000	0.402985	
mm_97711.1	chr11	80178755	80178955	+	1	NA	NA	NA	-5017	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.000000	0.427861	
mm_125254.1	chr15	35296026	35296226	+	1	NA	NA	NA	14	NM_054049	107587	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0.105000	0.736318	
mm_85723.1	chr9	108306059	108306259	-	1	NA	NA	NA	0	NM_133986	102791	Mm.24670	NM_133986	ENSMUSG00000039461	Tcta	9130410M22Rik|AW553637|C85065|Tctal	T cell leukemia translocation altered gene	protein-coding	0.070000	0.547264	-34(GGCTATAAAAGA,-,0.00),51(GGTTTTAAAAAC,-,0.00)
mm_72329.1	chr8	79027874	79028074	+	1	NA	NA	NA	-463	NM_001294279	622675	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.045000	0.557214	
mm_22845.1	chr3	27984537	27984737	+	1	NA	NA	NA	466	NM_008875	18805	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.020000	0.378109	-63(TGGTTTAAAGGG,-,0.00)
mm_85432.1	chr9	103729285	103729485	-	1	NA	NA	NA	32452	NM_178638	81907	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding	0.010000	0.557214	
mm_133755.1	chr16	94442490	94442690	+	1	NA	NA	NA	-71575	NM_001159617	56176	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0.025000	0.457711	
mm_107965.1	chr12	72757296	72757496	+	1	NA	NA	NA	-3815	NM_008910	19042	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.005000	0.532338	
mm_107711.1	chr12	55836224	55836424	+	1	NA	NA	NA	-42	NM_001037756	52592	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0.095000	0.651741	
mm_162645.1	chr1	194744023	194744223	+	1	NA	NA	NA	124294	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	0.005000	0.368159	
mm_119428.1	chr14	45543584	45543784	+	1	NA	NA	NA	-26	NR_045809	67651	Mm.55930	NR_045809		4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	0.015000	0.462687	
mm_115314.1	chr13	112363327	112363527	+	1	NA	NA	NA	74909	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.015000	0.577114	
mm_111075.1	chr12	80139239	80139439	-	1	NA	NA	NA	-6495	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.025000	0.582090	
mm_157407.1	chrX	38435451	38435651	-	1	NA	NA	NA	20909	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.005000	0.323383	
mm_125319.1	chr15	38299262	38299462	+	1	NA	NA	NA	1349	NM_013692	21847	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.150000	0.771144	
mm_88392.1	chr10	76531514	76531714	+	1	NA	NA	NA	9	NM_146006	16987	Mm.55075	NM_146006	ENSMUSG00000033105	Lss	2810025N20Rik|D10Ertd116e|Osc	lanosterol synthase	protein-coding	0.085000	0.656716	
mm_11615.1	chr2	34608372	34608572	+	1	NA	NA	NA	146760	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.010000	0.462687	
mm_86112.1	chr9	115438506	115438706	-	1	NA	NA	NA	56787	NR_130329	100316675		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	0.035000	0.507463	-23(GCCTCTATAAGA,-,0.00)
mm_30025.1	chr3	135665450	135665650	-	1	NA	NA	NA	25997	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.020000	0.507463	
mm_86275.1	chr9	121792321	121792521	-	1	NA	NA	NA	86	NM_029095	74770	Mm.44195	NM_029095	ENSMUSG00000032523	Hhatl	1110011D13Rik|Gup1|Mg56	hedgehog acyltransferase-like	protein-coding	0.040000	0.671642	
mm_43635.1	chr5	138229674	138229874	+	1	NA	NA	NA	3870	NM_001013773	381680	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0.005000	0.383085	
mm_30764.1	chr4	15976312	15976512	+	1	NA	NA	NA	18445	NM_013752	27354	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	0.005000	0.442786	
mm_63606.1	chr7	128150091	128150291	+	1	NA	NA	NA	20623	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.020000	0.517413	
mm_122208.1	chr14	32085203	32085403	-	1	NA	NA	NA	-17	NR_104305	105638	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	0.070000	0.537313	
mm_35031.1	chr4	4019572	4019772	-	1	NA	NA	NA	-9	NM_181989	242285	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	0.020000	0.517413	
mm_69411.1	chr7	132570111	132570311	-	1	NA	NA	NA	6187	NM_016978	18242	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0.020000	0.572139	
mm_18308.1	chr2	53191878	53192078	-	1	NA	NA	NA	-106	NM_022989	65103	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	0.130000	0.701493	
mm_92334.1	chr10	75797668	75797868	-	1	NA	NA	NA	816	NM_008185	14871	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	0.025000	0.552239	
mm_136053.1	chr16	78576703	78576903	-	1	NA	NA	NA	-115	NM_025967	67102	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.140000	0.800995	
mm_131746.1	chr16	22230259	22230459	+	1	NA	NA	NA	35646	NM_001330554	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding	0.040000	0.482587	
mm_122774.1	chr14	54409328	54409528	-	1	NA	NA	NA	44	NM_001253680	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.020000	0.507463	-81(GCGCTTTAAAAG,-,0.00),-80(CGCTTTAAAAGC,-,0.00),-79(GCTTTAAAAGCT,+,0.00)
mm_123822.1	chr14	70617617	70617817	-	1	NA	NA	NA	852	NM_001252666	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.010000	0.467662	-7(TTTTTTAAGGGG,+,0.00)
mm_104969.1	chr11	100203134	100203334	-	1	NA	NA	NA	2796	NM_001313957	16664	Mm.439898	NM_016958	ENSMUSG00000045545	Krt14	AI626930|CK-14|K14|Krt-1.14|Krt1-14	keratin 14	protein-coding	0.015000	0.507463	-5(GTCCCTATAGGC,-,0.00)
mm_117180.1	chr13	63398190	63398390	-	1	NA	NA	NA	33455	NM_001347515	14088	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	0.005000	0.412935	-68(GGCTTTAAAAAC,-,0.00)
mm_72323.1	chr8	78509312	78509512	+	1	NA	NA	NA	84	NM_001282108	76775	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0.075000	0.601990	
mm_164537.1	chr17	6743183	6743383	+	1	NA	NA	NA	37453	NM_183368	83672	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0.015000	0.557214	
mm_168857.1	chr12	27418472	27418672	-	1	NA	NA	NA	-75854	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.030000	0.477612	
mm_80366.1	chr9	75314150	75314350	+	1	NA	NA	NA	182	NM_138719	14697	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0.115000	0.691542	
mm_157831.1	chrX	74246319	74246519	-	1	NA	NA	NA	115	NM_010227	192176	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	0.095000	0.606965	
mm_8159.1	chr1	136949384	136949584	-	1	NA	NA	NA	4146	NM_001159769	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	0.030000	0.616915	
mm_70116.1	chr7	142899894	142900094	-	1	NA	NA	NA	-28	NM_009377	21823	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	0.040000	0.646766	-34(GGCCTTTAAGAG,-,0.00),-33(GCCTTTAAGAGG,-,0.00),-32(CCTTTAAGAGGC,+,0.00)
mm_17979.1	chr2	37703185	37703385	-	1	NA	NA	NA	-56000	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding	0.205000	0.805970	
mm_32567.1	chr4	109731311	109731511	+	1	NA	NA	NA	54784	NM_007983	14084	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	0.000000	0.462687	
mm_36048.1	chr4	57300241	57300441	-	1	NA	NA	NA	1496	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.160000	0.800995	
mm_79658.1	chr9	59656495	59656695	+	1	NA	NA	NA	227	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.095000	0.656716	
mm_77932.1	chr9	7354013	7354213	+	1	NA	NA	NA	6739	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.407960	
mm_55294.1	chr6	54593078	54593278	-	1	NA	NA	NA	-50	NM_153573	231997	Mm.274693	NM_153573	ENSMUSG00000038074	Fkbp14	BC029109|FKBP-14|FKBP22	FK506 binding protein 14	protein-coding	0.020000	0.457711	
mm_135843.1	chr16	58616876	58617076	-	1	NA	NA	NA	2	NM_001033404	328695	Mm.293308	NM_001033404	ENSMUSG00000075002	Gm813	Gm1781	predicted gene 813	protein-coding	0.015000	0.462687	
mm_664.1	chr1	40442497	40442697	+	1	NA	NA	NA	2968	NM_010743	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.005000	0.432836	
mm_164069.1	chr14	118787861	118788061	+	1	NA	NA	NA	90	NM_001160097	58187	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0.000000	0.363184	
mm_43481.1	chr5	136700906	136701106	+	1	NA	NA	NA	6829	NM_001085387	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.030000	0.537313	
mm_36693.1	chr4	96642631	96642831	-	1	NA	NA	NA	21388	NM_010007	13109	Mm.12838	NM_010007	ENSMUSG00000052520	Cyp2j5	-	cytochrome P450, family 2, subfamily j, polypeptide 5	protein-coding	0.000000	0.268657	70(TCTTATAAAGAT,+,0.00)
mm_34203.1	chr4	140924148	140924348	+	1	NA	NA	NA	17888	NM_008812	18600	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	0.030000	0.582090	
mm_147107.1	chr18	35702976	35703176	-	1	NA	NA	NA	68	NM_029669	76594	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	0.065000	0.592040	
mm_69140.1	chr7	127050433	127050633	-	1	NA	NA	NA	1444	NM_026918	69036	Mm.21835	NM_026918	ENSMUSG00000049350	Zg16	1810010M01Rik|AI593689|ZG16p	zymogen granule protein 16	protein-coding	0.030000	0.552239	
mm_36150.1	chr4	59505802	59506002	-	1	NA	NA	NA	43462	NM_178164	230257	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0.000000	0.323383	
mm_3370.1	chr1	138960082	138960282	+	1	NA	NA	NA	-3527	NM_001166501	329260	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.010000	0.432836	
mm_113000.1	chr13	21787387	21787587	+	1	NA	NA	NA	-1	NM_178202	319188	Mm.264645	NM_178202	ENSMUSG00000069308	Hist1h2bp	-	histone cluster 1, H2bp	protein-coding	0.050000	0.472637	
mm_151807.1	chr19	5447672	5447872	-	1	NA	NA	NA	74	NM_010235	14283	Mm.6215	NM_010235	ENSMUSG00000024912	Fosl1	AW538199|Fra1|fra-1	fos-like antigen 1	protein-coding	0.070000	0.601990	
mm_98779.1	chr11	96807602	96807802	+	1	NA	NA	NA	-9546	NR_033523	629750	Mm.390396	NR_033523		Gm11517	OTTMUSG00000001634	ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene	pseudo	0.000000	0.328358	
mm_19764.1	chr2	105399257	105399457	-	1	NA	NA	NA	-38	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0.135000	0.781095	
mm_3547.1	chr1	150407393	150407593	+	1	NA	NA	NA	-14438	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.040000	0.522388	
mm_88846.1	chr10	80929973	80930173	+	1	NA	NA	NA	-18	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.065000	0.547264	
mm_94825.1	chr11	23284562	23284762	+	1	NA	NA	NA	-22233	NM_001190401	17847	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.020000	0.388060	
mm_86675.1	chr10	18085619	18085819	+	1	NA	NA	NA	29779	NM_001111065	19707	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0.025000	0.492537	
mm_127014.1	chr15	95943460	95943660	+	1	NA	NA	NA	135993	NR_126493	402773	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0.015000	0.388060	
mm_12607.1	chr2	74682206	74682406	+	1	NA	NA	NA	-17	NM_008273	15431	Mm.207763	NM_008273	ENSMUSG00000042499	Hoxd11	E230017H14Rik|Hox-4.6|Hox-5.4|Hox-5.5	homeobox D11	protein-coding	0.080000	0.572139	
mm_27048.1	chr3	27194041	27194241	-	1	NA	NA	NA	11137	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.025000	0.512438	
mm_173337.1	chrY	90811205	90811405	+	1	NA	NA	NA	25863	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.005000	0.472637	
mm_78636.1	chr9	40148061	40148261	+	1	NA	NA	NA	39	NM_029379	75667	Mm.45821	NM_029379	ENSMUSG00000040541	Tmem225	1700030E15Rik|Tnen225	transmembrane protein 225	protein-coding	0.000000	0.427861	
mm_64218.1	chr7	141558397	141558597	+	1	NA	NA	NA	-3683	NM_007459	11772	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0.015000	0.487562	18(GGCTAGATAAGA,-,0.00)
mm_141931.1	chr17	35029755	35029955	-	1	NA	NA	NA	-1839	NM_023893	78376	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	0.010000	0.552239	
mm_163686.1	chr13	95918400	95918600	-	1	NA	NA	NA	-26578	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.010000	0.552239	
mm_12269.1	chr2	68979099	68979299	+	1	NA	NA	NA	117758	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.005000	0.407960	-12(TTTTTTAAAGCA,+,0.00)
mm_124139.1	chr14	87004705	87004905	-	1	NA	NA	NA	136309	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding	0.010000	0.407960	
mm_42488.1	chr5	115471912	115472112	+	1	NA	NA	NA	5746	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.020000	0.532338	
mm_24034.1	chr3	87629392	87629592	+	1	NA	NA	NA	10741	NM_001003912	213498	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	B930073M02|E130307F09|PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	0.010000	0.353234	41(ATCTATAAAAGT,-,0.00)
mm_45816.1	chr5	87678948	87679148	-	1	NA	NA	NA	12840	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.407960	
mm_2328.1	chr1	92774193	92774393	+	1	NA	NA	NA	-57393	NM_016696	14733	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.010000	0.502488	
mm_157839.1	chrX	74353499	74353699	-	1	NA	NA	NA	19	NM_025410	66192	Mm.21705	NM_025410	ENSMUSG00000015289	Lage3	1110049G11Rik|Eso3|Itba2	L antigen family, member 3	protein-coding	0.080000	0.656716	
mm_36677.1	chr4	96348564	96348764	-	1	NA	NA	NA	16	NM_001004141	100066	Mm.26915	NM_001004141	ENSMUSG00000066097	Cyp2j11	AI314783|Cyp2j11-ps	cytochrome P450, family 2, subfamily j, polypeptide 11	protein-coding	0.010000	0.512438	
mm_27302.1	chr3	49435734	49435934	-	1	NA	NA	NA	321482	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding	0.015000	0.388060	
mm_142711.1	chr17	47888129	47888329	-	1	NA	NA	NA	36403	NM_028767	74123	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.030000	0.616915	
mm_90089.1	chr10	116914192	116914392	+	1	NA	NA	NA	-17413	NM_001033333	237558	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	0.035000	0.412935	70(CCTTTAAAACGC,+,0.00)
mm_5480.1	chr1	36702072	36702272	-	1	NA	NA	NA	7753	NM_146107	226977	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	0.015000	0.522388	-64(GCTCTTTAAAGG,-,0.00),-63(CTCTTTAAAGGC,+,0.00),-63(CTCTTTAAAGGC,-,0.00),-62(TCTTTAAAGGCC,+,0.00)
mm_79294.1	chr9	51273730	51273930	+	1	NA	NA	NA	4724	NM_001195681	100502940	Mm.235705	NM_001195681	ENSMUSG00000079559	Gm684	-	predicted gene 684	protein-coding	0.010000	0.507463	
mm_61553.1	chr7	79399039	79399239	+	1	NA	NA	NA	6801	NM_145946	208836	Mm.349493	NM_145946	ENSMUSG00000039187	Fanci	-	Fanconi anemia, complementation group I	protein-coding	0.040000	0.562189	-50(GGCCCTTTAGGG,-,0.00),-48(CCCTTTAGGGAG,+,0.00)
mm_33293.1	chr4	128960884	128961084	+	1	NA	NA	NA	1471	NM_172875	242669	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.035000	0.601990	
mm_104178.1	chr11	87749373	87749573	-	1	NA	NA	NA	-7391	NR_029555	387160		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.010000	0.577114	
mm_71806.1	chr8	68793878	68794078	+	1	NA	NA	NA	49	NM_001293792	70885	Mm.252421	NM_027590	ENSMUSG00000031864	Ints10	4921521J11Rik|AI462004	integrator complex subunit 10	protein-coding	0.055000	0.621891	
mm_52763.1	chr6	120869939	120870139	+	1	NA	NA	NA	33809	NM_153516	94044	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	0.000000	0.378109	-39(GCATTTATACTC,+,0.00)
mm_93323.1	chr10	99132316	99132516	-	1	NA	NA	NA	24281	NM_015737	14426	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.015000	0.567164	
mm_39658.1	chr5	24985751	24985951	+	1	NA	NA	NA	9902	NM_001310480	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.025000	0.557214	
mm_70597.1	chr8	13288187	13288387	+	1	NA	NA	NA	-161	NM_001042650	102323	Mm.368890	NM_001024504	ENSMUSG00000038506	Dcun1d2	AW495713|mFLJ10704	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	protein-coding	0.085000	0.631841	
mm_117144.1	chr13	61037650	61037850	-	1	NA	NA	NA	2847	NM_029636	104002	Mm.46088	NM_029636	ENSMUSG00000021439	Ctsq	1600010J02Rik	cathepsin Q	protein-coding	0.010000	0.447761	
mm_105041.1	chr11	100591410	100591610	-	1	NA	NA	NA	15619	NM_001146318	12799	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.030000	0.457711	
mm_134301.1	chr16	15594420	15594620	-	1	NA	NA	NA	-2	NM_023585	70620	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	0.080000	0.621891	
mm_128416.1	chr15	44787924	44788124	-	1	NA	NA	NA	39	NM_176998	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding	0.040000	0.626866	
mm_161893.1	chr18	42301739	42301939	+	1	NA	NA	NA	26486	NM_172626	225432	Mm.329400	NM_172626	ENSMUSG00000024491	Rbm27	A730010I06|AI043120|Psc1|mKIAA1311	RNA binding motif protein 27	protein-coding	0.010000	0.582090	
mm_141605.1	chr17	32788174	32788374	-	1	NA	NA	NA	13	NM_172458	208292	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	0.030000	0.512438	
mm_37142.1	chr4	116992463	116992663	-	1	NA	NA	NA	1850	NM_009478	22275	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	0.000000	0.462687	
mm_155922.1	chrX	103356327	103356527	+	1	NA	NA	NA	-49	NM_009767	12212	Mm.42223	NM_009767	ENSMUSG00000031327	Chic1	Brx|ENSMUSG00000073019|Gm10454	cysteine-rich hydrophobic domain 1	protein-coding	0.070000	0.641791	
mm_75659.1	chr8	66480300	66480500	-	1	NA	NA	NA	6107	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.035000	0.517413	
mm_8740.1	chr1	160247526	160247726	-	1	NA	NA	NA	-34734	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0.025000	0.532338	
mm_80548.1	chr9	82829837	82830037	+	1	NA	NA	NA	131	NM_022986	65099	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	0.075000	0.616915	
mm_94326.1	chr11	4264207	4264407	+	1	NA	NA	NA	-2489	NM_001039537	16878	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.030000	0.631841	
mm_78626.1	chr9	38718940	38719140	+	1	NA	NA	NA	772	NM_172767	67776	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0.005000	0.492537	
mm_108994.1	chr12	102949118	102949318	+	1	NA	NA	NA	359	NM_001081017	217843	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	0.070000	0.621891	-86(CACTTTAAGAGG,-,0.00),-85(ACTTTAAGAGGC,+,0.00)
mm_155546.1	chrX	74312962	74313162	+	1	NA	NA	NA	29	NM_138607	108160	Mm.4370	NM_138607	ENSMUSG00000001962	Fam50a	D0HXS9928E|XAP-5	family with sequence similarity 50, member A	protein-coding	0.130000	0.681592	
mm_9.1	chr1	4808167	4808367	+	1	NA	NA	NA	374	NM_008866	18777	Mm.299955	NM_008866	ENSMUSG00000025903	Lypla1	Pla1a	lysophospholipase 1	protein-coding	0.040000	0.447761	
mm_88651.1	chr10	79991479	79991679	+	1	NA	NA	NA	2979	NM_007725	12798	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	0.020000	0.373134	
mm_22737.1	chr3	19894775	19894975	+	1	NA	NA	NA	4	NR_027985	70808	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	0.045000	0.537313	
mm_83361.1	chr9	44407258	44407458	-	1	NA	NA	NA	190	NM_021789	60409	Mm.29814	NM_021789	ENSMUSG00000032112	Trappc4	1500017G03Rik|AI303617|HSPC172|PTD009|Sbd|Sbdn|Sdcbp2|TRS23	trafficking protein particle complex 4	protein-coding	0.075000	0.601990	
mm_172985.1	chrM	2	202	+	1	NA	NA	NA	NA	NA									0.005000	0.323383	
mm_100464.1	chr11	119913329	119913529	+	1	NA	NA	NA	-381	NM_001085498	208092	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.035000	0.592040	
mm_10944.1	chr2	25501767	25501967	+	1	NA	NA	NA	-148	NM_001271777	69379	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	0.030000	0.606965	
mm_114583.1	chr13	75707454	75707654	+	1	NA	NA	NA	70	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.115000	0.721393	
mm_80133.1	chr9	70658435	70658635	+	1	NA	NA	NA	-1361	NM_172772	235461	Mm.170855	NM_172772	ENSMUSG00000042444	Fam63b	AI465301|B230380D07Rik|mKIAA1164	family with sequence similarity 63, member B	protein-coding	0.000000	0.368159	
mm_105448.1	chr11	104442256	104442456	-	1	NA	NA	NA	-65	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.135000	0.761194	
mm_120587.1	chr14	69840269	69840469	+	1	NA	NA	NA	-38	NM_028560	73523	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0.005000	0.487562	
mm_108066.1	chr12	73940489	73940689	+	1	NA	NA	NA	-23941	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.000000	0.417910	
mm_30773.1	chr4	17853541	17853741	+	1	NA	NA	NA	183	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.045000	0.527363	-6(CTTTTTAAAAGG,+,0.00),-6(CTTTTTAAAAGG,-,0.00)
mm_61033.1	chr7	49553789	49553989	+	1	NA	NA	NA	82946	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.005000	0.542289	
mm_137119.1	chr17	22501426	22501626	+	1	NA	NA	NA	71747	NM_001104573	210876	Mm.390947	NM_001104573	ENSMUSG00000095093	Vmn2r111	EG210876|V2rp2	vomeronasal 2, receptor 111	protein-coding	0.005000	0.293532	-47(TCTTTTATGGTT,+,0.00)
mm_167129.1	chr7	126777068	126777268	+	1	NA	NA	NA	193	NM_025347	66090	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee-like 3 (Drosophila)	protein-coding	0.115000	0.741294	
mm_25789.1	chr3	126810528	126810728	+	1	NA	NA	NA	132758	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.005000	0.462687	
mm_120970.1	chr14	77931161	77931361	+	1	NA	NA	NA	27022	NM_029495	108670	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.010000	0.368159	
mm_68039.1	chr7	101354339	101354539	-	1	NA	NA	NA	6370	NM_001040111	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.025000	0.532338	
mm_127139.1	chr15	98168571	98168771	+	1	NA	NA	NA	865	NM_177716	239650	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	0.060000	0.611940	
mm_76551.1	chr8	88354627	88354827	-	1	NA	NA	NA	7464	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.015000	0.358209	
mm_18649.1	chr2	69713369	69713569	-	1	NA	NA	NA	-863	NM_177244	320720	Mm.289566	NM_177244	ENSMUSG00000027086	Fastkd1	5330408N05Rik|mKIAA1800	FAST kinase domains 1	protein-coding	0.060000	0.592040	
mm_71962.1	chr8	70527929	70528129	+	1	NA	NA	NA	183	NM_001199631	14232	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|Fkbp38	FK506 binding protein 8	protein-coding	0.105000	0.741294	
mm_173107.1	chrX	156931643	156931843	+	1	NA	NA	NA	392260	NR_033598	74941	Mm.484588	NR_033598		4930503H13Rik	-	gem (nuclear organelle) associated protein 8 pseudogene	pseudo	0.030000	0.402985	
mm_39058.1	chr4	154023671	154023871	-	1	NA	NA	NA	2273	NM_001163722	68859	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	0.015000	0.567164	
mm_172750.1	chr8	84687041	84687241	-	1	NA	NA	NA	721	NM_025788	66830	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	0.050000	0.626866	
mm_35046.1	chr4	4576309	4576509	-	1	NA	NA	NA	-46951	NM_001277919	622019	Mm.246123	NM_001277919		Gm11780	OTTMUSG00000004194	predicted gene 11780	protein-coding	0.025000	0.417910	
mm_83084.1	chr9	40239779	40239979	-	1	NA	NA	NA	-29337	NM_001083917	235281	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.010000	0.442786	
mm_40458.1	chr5	53604264	53604464	+	1	NA	NA	NA	13878	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.005000	0.303483	
mm_57984.1	chr6	135733569	135733769	-	1	NA	NA	NA	74756	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	0.030000	0.512438	
mm_26591.1	chr3	151437802	151438002	+	1	NA	NA	NA	20	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.065000	0.636816	
mm_111819.1	chr12	106034304	106034504	-	1	NA	NA	NA	24141	NM_001029843	22367	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0.015000	0.417910	
mm_11255.1	chr2	29903482	29903682	+	1	NA	NA	NA	13519	NM_013615	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.005000	0.552239	
mm_16031.1	chr2	167628992	167629192	+	1	NA	NA	NA	2913	NM_001311146	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.015000	0.547264	
mm_139485.1	chr17	56079536	56079736	+	1	NA	NA	NA	5	NM_001304785	15193	Mm.12966	NM_008233	ENSMUSG00000002833	Hdgfrp2	HRP-2	hepatoma-derived growth factor, related protein 2	protein-coding	0.140000	0.711443	
mm_48422.1	chr5	140389121	140389321	-	1	NA	NA	NA	87	NM_172277	231834	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.135000	0.756219	
mm_34689.1	chr4	151933638	151933838	+	1	NA	NA	NA	18	NM_172704	230935	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	0.120000	0.681592	
mm_41018.1	chr5	81418017	81418217	+	1	NA	NA	NA	396524	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.000000	0.328358	
mm_148458.1	chr19	4003313	4003513	+	1	NA	NA	NA	28	NM_021791	60425	Mm.266972	NM_021791	ENSMUSG00000024871	Doc2g	D830013O18Rik	double C2, gamma	protein-coding	0.005000	0.552239	
mm_116930.1	chr13	55784368	55784568	-	1	NA	NA	NA	-111	NM_029772	76856	Mm.159795	NM_029772	ENSMUSG00000021499	Catsper3	4921522D01Rik|CACRC	cation channel, sperm associated 3	protein-coding	0.005000	0.517413	-76(TGCTTTATGAGG,-,0.00)
mm_63510.1	chr7	127848293	127848493	+	1	NA	NA	NA	6585	NM_009294	20909	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.050000	0.532338	
mm_75755.1	chr8	69908794	69908994	-	1	NA	NA	NA	-6336	NM_023312	67184	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.025000	0.542289	
mm_134089.1	chr16	8792272	8792472	-	1	NA	NA	NA	-37728	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.030000	0.512438	
mm_149121.1	chr19	8989186	8989386	+	1	NA	NA	NA	2	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.110000	0.751244	
mm_35913.1	chr4	52197114	52197314	-	1	NA	NA	NA	-146104	NR_040668	329844	Mm.128934	NR_040668	ENSMUSG00000085515	C630028M04Rik	-	RIKEN cDNA C630028M04 gene	ncRNA	0.000000	0.432836	
mm_25321.1	chr3	106547606	106547806	+	1	NA	NA	NA	-92	NM_001286986	67171	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0.080000	0.606965	
mm_43799.1	chr5	142818899	142819099	+	1	NA	NA	NA	-1612	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.040000	0.507463	
mm_94161.1	chr10	128745389	128745589	-	1	NA	NA	NA	-1433	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.035000	0.502488	
mm_69979.1	chr7	142377533	142377733	-	1	NA	NA	NA	-3887	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.020000	0.477612	
mm_9099.1	chr1	169747542	169747742	-	1	NA	NA	NA	0	NM_009062	19736	Mm.41642	NM_009062	ENSMUSG00000038530	Rgs4	AA004315|AA597169|ESTM48|ESTM50	regulator of G-protein signaling 4	protein-coding	0.055000	0.582090	-34(AGCTATAAAAGA,-,0.00)
mm_54335.1	chr6	30642241	30642441	-	1	NA	NA	NA	3123	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.030000	0.552239	
mm_147832.1	chr18	62548600	62548800	-	1	NA	NA	NA	43	NM_134136	107035	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	0.115000	0.676617	
mm_137885.1	chr17	31635929	31636129	+	1	NA	NA	NA	1176	NM_144855	12411	Mm.206417	NM_144855	ENSMUSG00000024039	Cbs	AI047524|AI303044|HIP4	cystathionine beta-synthase	protein-coding	0.045000	0.577114	
mm_74523.1	chr8	9414753	9414953	-	1	NA	NA	NA	270184	NR_073360	74688	Mm.159298	NR_073360	ENSMUSG00000109215	4930453L07Rik	-	RIKEN cDNA 4930453L07 gene	ncRNA	0.005000	0.398010	
mm_134985.1	chr16	32130223	32130423	-	1	NA	NA	NA	30521	NM_025892	66994	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0.030000	0.542289	
mm_8584.1	chr1	155973132	155973332	-	1	NA	NA	NA	23	NM_001039184	74081	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	0.115000	0.711443	
mm_90487.1	chr10	127961437	127961637	+	1	NA	NA	NA	45971	NM_013786	27400	Mm.26719	NM_013786	ENSMUSG00000025396	Hsd17b6	17betaHSD9|Hsd17b9|Rdh8	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding	0.030000	0.472637	
mm_53727.1	chr6	145075307	145075507	+	1	NA	NA	NA	750	NM_007532	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.030000	0.492537	89(GACCTTAAAAGA,-,0.00)
mm_49805.1	chr6	36387946	36388146	+	1	NA	NA	NA	-38	NM_203491	243764	Mm.448632	NM_203491	ENSMUSG00000045613	Chrm2	AChR-M2|Chrm-2|M2	cholinergic receptor, muscarinic 2, cardiac	protein-coding	0.060000	0.547264	
mm_76296.1	chr8	84203570	84203770	-	1	NA	NA	NA	-4848	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.070000	0.716418	
mm_30154.1	chr3	142623777	142623977	-	1	NA	NA	NA	69	NR_105802	102465200		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.010000	0.522388	
mm_76206.1	chr8	83389630	83389830	-	1	NA	NA	NA	-112	NM_001329627	12745	Mm.358581	NM_009904	ENSMUSG00000002190	Clgn	4930459O04Rik|A2/6|AI528775|Cln	calmegin	protein-coding	0.075000	0.631841	
mm_76552.1	chr8	88361610	88361810	-	1	NA	NA	NA	481	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.105000	0.721393	
mm_66161.1	chr7	31155869	31156069	-	1	NA	NA	NA	-4919	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.015000	0.562189	
mm_33817.1	chr4	135337702	135337902	+	1	NA	NA	NA	15412	NM_016799	51796	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.040000	0.527363	
mm_393.1	chr1	34121081	34121281	+	1	NA	NA	NA	3822	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.020000	0.482587	
mm_39379.1	chr5	12719743	12719943	+	1	NA	NA	NA	336677	NM_028882	108151	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.035000	0.512438	
mm_69126.1	chr7	127026433	127026633	-	1	NA	NA	NA	-54	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.180000	0.865672	
mm_31121.1	chr4	42957327	42957527	+	1	NA	NA	NA	4333	NM_019874	56323	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.035000	0.542289	
mm_53055.1	chr6	124809642	124809842	+	1	NA	NA	NA	824	NM_001306053	14794	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.030000	0.611940	
mm_126680.1	chr15	84719973	84720173	+	1	NA	NA	NA	21	NM_001205334	73167	Mm.128411	NM_028455	ENSMUSG00000078954	Arhgap8	3110043J09Rik	Rho GTPase activating protein 8	protein-coding	0.060000	0.701493	
mm_26126.1	chr3	137867768	137867968	+	1	NA	NA	NA	193	NM_001033155	70604	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	0.190000	0.815920	
mm_20279.1	chr2	126890787	126890987	-	1	NA	NA	NA	11498	NR_106202	102466258		NR_106202	ENSMUSG00000098896	Mir3473g	Gm27751|mmu-mir-3473g	microRNA 3473g	ncRNA	0.020000	0.388060	
mm_139303.1	chr17	48347416	48347616	+	1	NA	NA	NA	1115	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.005000	0.497512	
mm_102919.1	chr11	69600061	69600261	-	1	NA	NA	NA	5799	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.010000	0.492537	66(GCCTTTAAAAAA,-,0.00),67(CCTTTAAAAAAC,+,0.00)
mm_82706.1	chr9	22772735	22772935	-	1	NA	NA	NA	297120	NM_178415	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.005000	0.383085	-8(TCTTTTATAGCT,+,0.00)
mm_10866.1	chr2	25180651	25180851	+	1	NA	NA	NA	-7	NM_025980	67122	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	0.100000	0.567164	
mm_62421.1	chr7	101321647	101321847	+	1	NA	NA	NA	428	NM_019990	56018	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	0.080000	0.691542	
mm_102714.1	chr11	67113356	67113556	-	1	NA	NA	NA	6624	NR_038055	74184	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	0.005000	0.507463	
mm_89971.1	chr10	111506332	111506532	+	1	NA	NA	NA	146	NM_009344	21664	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0.135000	0.756219	
mm_167003.1	chr7	49703481	49703681	-	1	NA	NA	NA	-55525	NM_001146053	53415	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0.000000	0.358209	
mm_65213.1	chr7	19697988	19698188	-	1	NA	NA	NA	310	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.010000	0.487562	73(AACTATAAGAGG,-,0.00)
mm_3989.1	chr1	164373168	164373368	+	1	NA	NA	NA	65596	NM_178071	171567	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	0.025000	0.557214	-63(GACTTTAAGGGG,-,0.00)
mm_106114.1	chr11	116335292	116335492	-	1	NA	NA	NA	-38	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.110000	0.686567	
mm_58651.1	chr7	6286506	6286706	+	1	NA	NA	NA	26	NM_001024928	384763	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0.050000	0.656716	
mm_117984.1	chr13	100174339	100174539	-	1	NA	NA	NA	27683	NM_001126182	17948	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0.010000	0.442786	
mm_48687.1	chr5	146749416	146749616	-	1	NA	NA	NA	45440	NM_011669	22217	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.010000	0.422886	
mm_3014.1	chr1	133363593	133363793	+	1	NA	NA	NA	121	NM_175443	214253	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	0.070000	0.681592	
mm_149429.1	chr19	11469313	11469513	+	1	NA	NA	NA	45	NM_028595	73656	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.010000	0.472637	
mm_37328.1	chr4	119492491	119492691	-	1	NA	NA	NA	7	NM_177572	194237	Mm.206201	NM_177572	ENSMUSG00000048899	Rimkla	B930030J24|NAAGS|NAAGS-II|Rimk	ribosomal modification protein rimK-like family member A	protein-coding	0.170000	0.786070	
mm_5120.1	chr1	7396974	7397174	-	1	NA	NA	NA	308154	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.030000	0.412935	
mm_8309.1	chr1	144177091	144177291	-	1	NA	NA	NA	181	NM_153171	246709	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	0.025000	0.407960	
mm_113291.1	chr13	30336298	30336498	+	1	NA	NA	NA	42	NM_177322	11607	Mm.35062	NM_177322	ENSMUSG00000049115	Agtr1a	1810074K20Rik|AG2S|AI551199|AT1|AT1a|AT2R1|AT2R1A|Agtr-1a|Agtr1|Angtr-1a	angiotensin II receptor, type 1a	protein-coding	0.060000	0.641791	
mm_158636.1	chrX	155214021	155214221	-	1	NA	NA	NA	2328	NM_009121	20229	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	0.010000	0.407960	
mm_41238.1	chr5	88764945	88765145	+	1	NA	NA	NA	32	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.120000	0.721393	
mm_48302.1	chr5	138272638	138272838	-	1	NA	NA	NA	16	NM_001033416	330217	Mm.332774	NM_001033416	ENSMUSG00000075593	Gal3st4	1500031A01Rik	galactose-3-O-sulfotransferase 4	protein-coding	0.015000	0.537313	
mm_140261.1	chr17	84613142	84613342	+	1	NA	NA	NA	-13257	NM_172256	213575	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0.000000	0.398010	
mm_11203.1	chr2	29159817	29160017	+	1	NA	NA	NA	34925	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.010000	0.328358	
mm_145513.1	chr18	60443021	60443221	+	1	NA	NA	NA	58862	NM_134133	106878	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.015000	0.378109	
mm_80646.1	chr9	89826853	89827053	+	1	NA	NA	NA	434	NR_040735	74700	Mm.159306	NR_040735	ENSMUSG00000098627	4930524O08Rik	-	RIKEN cDNA 4930524O08 gene	ncRNA	0.025000	0.537313	
mm_141588.1	chr17	32409418	32409618	-	1	NA	NA	NA	-5936	NM_001347343	320484	Mm.122284	NM_178785	ENSMUSG00000052142	Rasal3	A430107D22Rik	RAS protein activator like 3	protein-coding	0.005000	0.378109	
mm_8672.1	chr1	156674217	156674417	-	1	NA	NA	NA	22	NM_023141	30935	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.110000	0.721393	
mm_42784.1	chr5	121452602	121452802	+	1	NA	NA	NA	-7	NM_029912	77462	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	0.150000	0.701493	
mm_85696.1	chr9	108083250	108083450	-	1	NA	NA	NA	1852	NR_106056	102466914		NR_106056	ENSMUSG00000098787	Mir7088	Gm27577|mmu-mir-7088	microRNA 7088	ncRNA	0.025000	0.557214	
mm_48240.1	chr5	137741335	137741535	-	1	NA	NA	NA	-267	NM_001347505	243300	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	0.110000	0.721393	
mm_134956.1	chr16	31311001	31311201	-	1	NA	NA	NA	3707	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.025000	0.542289	
mm_171091.1	chr3	127771921	127772121	+	1	NA	NA	NA	8506	NM_027808	71481	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	0.060000	0.616915	
mm_169396.1	chr14	45570311	45570511	-	1	NA	NA	NA	26701	NR_045809	67651	Mm.55930	NR_045809		4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	0.030000	0.502488	-18(GCCTTTAAGAAG,-,0.00)
mm_24079.1	chr3	87932075	87932275	+	1	NA	NA	NA	1861	NM_177663	229504	Mm.45744	NM_177663	ENSMUSG00000048039	Isg20l2	4930429N24|C80587	interferon stimulated exonuclease gene 20-like 2	protein-coding	0.050000	0.537313	78(CCTTTAAGACTG,+,0.00)
mm_74607.1	chr8	12457920	12458120	-	1	NA	NA	NA	62501	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.005000	0.562189	
mm_19014.1	chr2	76905730	76905930	-	1	NA	NA	NA	76717	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.005000	0.467662	
mm_46501.1	chr5	105133898	105134098	-	1	NA	NA	NA	5554	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.417910	
mm_101109.1	chr11	11933289	11933489	-	1	NA	NA	NA	-35245	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.030000	0.517413	
mm_3589.1	chr1	151357972	151358172	+	1	NA	NA	NA	13574	NM_001039511	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.015000	0.363184	
mm_40687.1	chr5	65763459	65763659	+	1	NA	NA	NA	38	NM_001024917	333789	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.100000	0.716418	
mm_6385.1	chr1	72849066	72849266	-	1	NA	NA	NA	23779	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.025000	0.577114	
mm_59802.1	chr7	29134841	29135041	+	1	NA	NA	NA	8	NR_045676	233046	Mm.465324	NM_145149	ENSMUSG00000030589	Rasgrp4	-	RAS guanyl releasing protein 4	protein-coding	0.020000	0.646766	
mm_40778.1	chr5	67260848	67261048	+	1	NA	NA	NA	383	NM_030108	67878	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	0.105000	0.681592	
mm_166547.1	chr6	38921409	38921609	+	1	NA	NA	NA	2523	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.030000	0.532338	
mm_154208.1	chr19	59075527	59075727	-	1	NA	NA	NA	442	NM_175172	71653	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Kiaa1598|Shootin1|mKIAA1598	shootin 1	protein-coding	0.100000	0.706468	87(CCTTTTATCCCC,+,0.00)
mm_164793.1	chr18	16746154	16746354	-	1	NA	NA	NA	62992	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.005000	0.368159	
mm_15044.1	chr2	152830518	152830718	+	1	NA	NA	NA	99	NM_001289716	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.065000	0.656716	
mm_33558.1	chr4	131873427	131873627	+	1	NA	NA	NA	-112	NM_020587	57317	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0.145000	0.786070	
mm_88066.1	chr10	67693786	67693986	+	1	NA	NA	NA	-144931	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.010000	0.507463	
mm_51948.1	chr6	91726118	91726318	+	1	NA	NA	NA	42151	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.020000	0.567164	
mm_35225.1	chr4	19687782	19687982	-	1	NA	NA	NA	21122	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.015000	0.477612	
mm_155033.1	chrX	42068361	42068561	+	1	NA	NA	NA	63	NR_125870	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.075000	0.696517	
mm_77286.1	chr8	116799882	116800082	-	1	NA	NA	NA	1430	NR_046193	78213	Mm.402039	NR_046193		4930563M20Rik	-	RIKEN cDNA 4930563M20 gene	ncRNA	0.000000	0.407960	
mm_16690.1	chr2	6884814	6885014	-	1	NA	NA	NA	82	NM_010160	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.025000	0.447761	52(CTGCTTTTAAGG,-,0.00),54(GCTTTTAAGGTA,+,0.00)
mm_127967.1	chr15	12009966	12010166	-	1	NA	NA	NA	-14059	NM_011294	20024	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.050000	0.497512	
mm_118713.1	chr14	22185849	22186049	+	1	NA	NA	NA	166237	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.015000	0.427861	-34(GGGTTTAAAAAG,-,0.00),-32(GTTTAAAAAGTC,+,0.00)
mm_122464.1	chr14	45529486	45529686	-	1	NA	NA	NA	479	NM_146054	218952	Mm.210018	NM_146054	ENSMUSG00000037712	Fermt2	AA960555|Kindlin-2|Mig2|Plekhc1	fermitin family member 2	protein-coding	0.100000	0.636816	
mm_8050.1	chr1	135373341	135373541	-	1	NA	NA	NA	1622	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.005000	0.522388	-96(CAATATAAAAGC,-,0.00)
mm_49757.1	chr6	34755608	34755808	+	1	NA	NA	NA	-24724	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.050000	0.616915	
mm_159521.1	chr4	61519506	61519706	-	1	NA	NA	NA	-120	NM_001199936	100039177	Mm.422695	NM_001199936	ENSMUSG00000078675	Mup16	Mup6	major urinary protein 16	protein-coding	0.010000	0.388060	86(GAGTATATAAGG,-,0.00)
mm_17506.1	chr2	28917896	28918096	-	1	NA	NA	NA	-1556	NM_001164186	54422	Mm.21390	NM_019446	ENSMUSG00000026805	Barhl1	Dres115|MBH2	BarH-like 1 (Drosophila)	protein-coding	0.120000	0.731343	
mm_9283.1	chr1	171634532	171634732	-	1	NA	NA	NA	7268	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.422886	
mm_167650.1	chr9	65700297	65700497	+	1	NA	NA	NA	23849	NM_001301307	18247	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0.015000	0.497512	
mm_57311.1	chr6	124723534	124723734	-	1	NA	NA	NA	-5244	NR_029792	723944		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0.020000	0.512438	
mm_17298.1	chr2	26294456	26294656	-	1	NA	NA	NA	1	NM_177841	329366	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding	0.000000	0.527363	
mm_31872.1	chr4	80834191	80834391	+	1	NA	NA	NA	78	NM_001282015	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.005000	0.502488	
mm_7417.1	chr1	119504604	119504804	-	1	NA	NA	NA	78	NM_022327	64143	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0.105000	0.701493	
mm_84648.1	chr9	71554881	71555081	-	1	NA	NA	NA	37379	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	0.020000	0.427861	-7(TTTTTTAAAGCA,+,0.00)
mm_54073.1	chr6	14755015	14755215	-	1	NA	NA	NA	159	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	0.025000	0.497512	
mm_42672.1	chr5	119671591	119671791	+	1	NA	NA	NA	458	NM_011535	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.050000	0.616915	
mm_32803.1	chr4	117120499	117120699	+	1	NA	NA	NA	5126	NR_024078	78611	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0.055000	0.592040	
mm_68610.1	chr7	116381587	116381787	-	1	NA	NA	NA	-47497	NM_026533	68052	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0.010000	0.417910	
mm_29251.1	chr3	107218933	107219133	-	1	NA	NA	NA	2699	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.547264	
mm_27872.1	chr3	79163679	79163879	-	1	NA	NA	NA	-17904	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.368159	
mm_156300.1	chrX	136837794	136837994	+	1	NA	NA	NA	15148	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.353234	
mm_90742.1	chr10	5368286	5368486	-	1	NA	NA	NA	119928	NM_001347711	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.010000	0.393035	
mm_152868.1	chr19	24224969	24225169	-	1	NA	NA	NA	-43	NM_011597	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.040000	0.557214	
mm_97687.1	chr11	80136480	80136680	+	1	NA	NA	NA	5573	NM_183275	68550	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0.010000	0.467662	-33(CCCTAGAAAAGC,-,0.00),25(GCTTTTAAATGG,+,0.00),25(GCTTTTAAATGG,-,0.00)
mm_17812.1	chr2	33718632	33718832	-	1	NA	NA	NA	77539	NR_046275	100504399	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	0.030000	0.537313	
mm_157877.1	chrX	75764585	75764785	-	1	NA	NA	NA	14	NR_029443	74396	Mm.162493	NR_029443	ENSMUSG00000087396	4933407K13Rik	A130080L05Rik	RIKEN cDNA 4933407K13 gene	ncRNA	0.045000	0.537313	
mm_2270.1	chr1	91214467	91214667	+	1	NA	NA	NA	34745	NM_001168392	51801	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	0.000000	0.437811	
mm_139662.1	chr17	57406846	57407046	+	1	NA	NA	NA	48260	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.025000	0.477612	
mm_167840.1	chr9	124441495	124441695	+	1	NA	NA	NA	17808	NR_015516	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.027211	0.574324	
mm_68820.1	chr7	126082380	126082580	-	1	NA	NA	NA	-69	NM_001101488	269994	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.160000	0.776119	
mm_79344.1	chr9	53405202	53405402	+	1	NA	NA	NA	16	NM_029247	75311	Mm.26078	NM_029247	ENSMUSG00000005131	4930550C14Rik	AU017961	RIKEN cDNA 4930550C14 gene	protein-coding	0.030000	0.522388	
mm_132068.1	chr16	30064257	30064457	+	1	NA	NA	NA	-1000	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hairy and enhancer of split 1 (Drosophila)	protein-coding	0.130000	0.706468	51(AGCTCTTAAAGG,-,0.00),52(GCTCTTAAAGGG,+,0.00),52(GCTCTTAAAGGG,-,0.00),53(CTCTTAAAGGGC,+,0.00)
mm_1425.1	chr1	67174413	67174613	+	1	NA	NA	NA	51486	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.025000	0.477612	
mm_33367.1	chr4	129513338	129513538	+	1	NA	NA	NA	-143	NM_010807	17357	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0.045000	0.601990	
mm_11630.1	chr2	34775520	34775720	+	1	NA	NA	NA	3530	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.015000	0.412935	
mm_110289.1	chr12	32123727	32123927	-	1	NA	NA	NA	-62548	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.005000	0.502488	
mm_158716.1	chrX	162643499	162643699	-	1	NA	NA	NA	59	NM_001290633	194590	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	0.115000	0.736318	
mm_99658.1	chr11	105731670	105731870	+	1	NA	NA	NA	141784	NM_181071	77097	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.020000	0.467662	
mm_79437.1	chr9	56089843	56090043	+	1	NA	NA	NA	-33	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.015000	0.651741	
mm_156268.1	chrX	136833176	136833376	+	1	NA	NA	NA	10530	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.452736	
mm_144238.1	chr18	10714949	10715149	+	1	NA	NA	NA	8189	NR_045379	75370	Mm.159511	NR_045379	ENSMUSG00000097387	4930563E18Rik	-	RIKEN cDNA 4930563E18 gene	ncRNA	0.015000	0.457711	
mm_44309.1	chr5	9145850	9146050	-	1	NA	NA	NA	15826	NM_001110327	23857	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0.000000	0.373134	
mm_129660.1	chr15	81104892	81105092	-	1	NA	NA	NA	55	NM_153049	223701	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.025000	0.562189	
mm_62396.1	chr7	101108433	101108633	+	1	NA	NA	NA	-242	NM_001146010	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.130000	0.786070	
mm_65723.1	chr7	28380832	28381032	-	1	NA	NA	NA	-1704	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.030000	0.477612	
mm_82813.1	chr9	30781317	30781517	-	1	NA	NA	NA	139533	NM_001329420	235130	Mm.65867	NM_001024139	ENSMUSG00000033453	Adamts15	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15	protein-coding	0.010000	0.512438	
mm_153627.1	chr19	44013562	44013762	-	1	NA	NA	NA	15585	NM_001001446	226143	Mm.329866	NM_001001446	ENSMUSG00000025197	Cyp2c44	AW107714|BC034834|b2b386Clo	cytochrome P450, family 2, subfamily c, polypeptide 44	protein-coding	0.015000	0.507463	
mm_90530.1	chr10	128086050	128086250	+	1	NA	NA	NA	864	NR_030442	751518		NR_030442	ENSMUSG00000093245	Mir677	Mirn677|mir-677|mmu-mir-677	microRNA 677	ncRNA	0.035000	0.542289	
mm_97937.1	chr11	83648540	83648740	+	1	NA	NA	NA	738	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.030000	0.492537	
mm_138075.1	chr17	33951424	33951624	+	1	NA	NA	NA	-36	NM_019420	54218	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	0.080000	0.621891	89(GCTTTTCTAGAG,+,0.00)
mm_126098.1	chr15	78163538	78163738	+	1	NA	NA	NA	10470	NM_025931	67042	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	0.025000	0.507463	
mm_48507.1	chr5	142818833	142819033	-	1	NA	NA	NA	-1546	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.030000	0.497512	
mm_114676.1	chr13	80885598	80885798	+	1	NA	NA	NA	2276	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.100000	0.691542	
mm_77749.1	chr8	127441109	127441309	-	1	NA	NA	NA	141557	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.010000	0.542289	
mm_69289.1	chr7	128206215	128206415	-	1	NA	NA	NA	51	NM_009943	12862	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	0.020000	0.572139	28(GCCTCTAAAGGT,-,0.00)
mm_336.1	chr1	29969120	29969320	+	1	NA	NA	NA	547732	NR_105760	102465174		NR_105760	ENSMUSG00000099257	Mir6342	Gm27268|mmu-mir-6342	microRNA 6342	ncRNA	0.000000	0.293532	
mm_115195.1	chr13	108864296	108864496	+	1	NA	NA	NA	210219	NM_011056	238871	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	0.010000	0.378109	
mm_107979.1	chr12	72945594	72945794	+	1	NA	NA	NA	5812	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	0.145000	0.805970	
mm_164318.1	chr16	3714720	3714920	-	1	NA	NA	NA	3304	NM_001161790	54483	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.010000	0.407960	
mm_98488.1	chr11	94951207	94951407	+	1	NA	NA	NA	15083	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.035000	0.587065	
mm_79675.1	chr9	59709364	59709564	+	1	NA	NA	NA	1700	NM_001033498	546134	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463	GRAM domain containing 2	protein-coding	0.005000	0.527363	
mm_35830.1	chr4	48034377	48034577	-	1	NA	NA	NA	-10828	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.035000	0.567164	
mm_84270.1	chr9	62790775	62790975	-	1	NA	NA	NA	20773	NM_010193	14155	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.000000	0.263682	
mm_41630.1	chr5	97006418	97006618	+	1	NA	NA	NA	8829	NM_080708	140780	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.010000	0.532338	
mm_39681.1	chr5	25759916	25760116	+	1	NA	NA	NA	43	NM_001004365	242894	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	0.095000	0.726368	
mm_104640.1	chr11	97525369	97525569	-	1	NA	NA	NA	-25129	NM_001289118	100141474	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.020000	0.636816	
mm_151074.1	chr19	47579318	47579518	+	1	NA	NA	NA	-601	NM_009289	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0.120000	0.691542	
mm_136218.1	chr16	89960711	89960911	-	1	NA	NA	NA	16	NM_009384	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.050000	0.597015	
mm_42601.1	chr5	117509848	117510048	+	1	NA	NA	NA	95946	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.025000	0.587065	
mm_124443.1	chr14	118853050	118853250	-	1	NA	NA	NA	-1800	NM_021386	58187	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0.005000	0.462687	
mm_134801.1	chr16	24380216	24380416	-	1	NA	NA	NA	-13034	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.005000	0.532338	
mm_172188.1	chr6	50566411	50566611	-	1	NA	NA	NA	-37	NM_007808	13063	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0.140000	0.666667	
mm_96918.1	chr11	70468024	70468224	+	1	NA	NA	NA	-8140	NM_023158	66102	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.010000	0.472637	
mm_123669.1	chr14	69248819	69249019	-	1	NA	NA	NA	36184	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.040000	0.557214	
mm_12330.1	chr2	69412696	69412896	+	1	NA	NA	NA	32334	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.005000	0.447761	
mm_4326.1	chr1	171851954	171852154	+	1	NA	NA	NA	12357	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.015000	0.412935	-66(ACTTATAAAGGA,+,0.00)
mm_135696.1	chr16	52442270	52442470	-	1	NA	NA	NA	10711	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.303483	
mm_64114.1	chr7	141078098	141078298	+	1	NA	NA	NA	-31	NM_001162924	56460	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0.065000	0.626866	
mm_11887.1	chr2	49721692	49721892	+	1	NA	NA	NA	-65894	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.015000	0.452736	-70(GCTTATCTAGGG,+,0.00)
mm_125990.1	chr15	76351260	76351460	+	1	NA	NA	NA	66	NM_026859	68877	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	0.110000	0.656716	
mm_114229.1	chr13	56522430	56522630	+	1	NA	NA	NA	22	NM_178674	213311	Mm.233904	NM_178674	ENSMUSG00000035509	Fbxl21	D630045D17Rik|FBL3B|FBXL3B|Psttm	F-box and leucine-rich repeat protein 21	protein-coding	0.095000	0.676617	
mm_85657.1	chr9	107667160	107667360	-	1	NA	NA	NA	139	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.060000	0.636816	
mm_124699.1	chr15	6445237	6445437	+	1	NA	NA	NA	4	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.005000	0.527363	
mm_1563.1	chr1	74155555	74155755	+	1	NA	NA	NA	1661	NM_009909	12765	Mm.234466	NM_009909	ENSMUSG00000026180	Cxcr2	CD128|CDw128|Cmkar2|Gpcr16|IL-8Rh|IL-8rb|IL8RA|Il8rb|mIL-8RH	chemokine (C-X-C motif) receptor 2	protein-coding	0.015000	0.517413	
mm_142251.1	chr17	37527522	37527722	-	1	NA	NA	NA	-2335	NM_001005485	545205	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	0.005000	0.457711	
mm_103153.1	chr11	70381861	70382061	-	1	NA	NA	NA	28070	NM_029231	75273	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	0.010000	0.422886	
mm_90025.1	chr10	115401165	115401365	+	1	NA	NA	NA	16306	NM_001033261	216345	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0.010000	0.363184	
mm_168584.1	chr11	73470186	73470386	+	1	NA	NA	NA	-16076	NM_147025	259027	Mm.223412	NM_147025	ENSMUSG00000072709	Olfr380	MOR135-1	olfactory receptor 380	protein-coding	0.060000	0.646766	
mm_77740.1	chr8	126945752	126945952	-	1	NA	NA	NA	69	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.165000	0.761194	
mm_117827.1	chr13	98206069	98206269	-	1	NA	NA	NA	-4	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0.115000	0.796020	
mm_110764.1	chr12	70227531	70227731	-	1	NA	NA	NA	52	NM_133198	110095	Mm.256926	NM_133198	ENSMUSG00000021069	Pygl	-	liver glycogen phosphorylase	protein-coding	0.070000	0.666667	
mm_145080.1	chr18	42338864	42339064	+	1	NA	NA	NA	-55633	NM_138945	18998	Mm.488204	NM_138945	ENSMUSG00000024497	Pou4f3	Brn3.1|Brn3c|ddl|dreidel	POU domain, class 4, transcription factor 3	protein-coding	0.015000	0.422886	
mm_78220.1	chr9	21546696	21546896	+	1	NA	NA	NA	-98	NM_021531	59035	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0.160000	0.815920	
mm_132957.1	chr16	50044148	50044348	+	1	NA	NA	NA	28604	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.005000	0.457711	
mm_118202.1	chr13	108158507	108158707	-	1	NA	NA	NA	18	NM_001127346	75597	Mm.276040	NM_001127346	ENSMUSG00000068184	Ndufaf2	1810058I14Rik|C86051|Ndufa12l|mimitin	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 2	protein-coding	0.085000	0.656716	
mm_165504.1	chr2	167775583	167775783	+	1	NA	NA	NA	84506	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.035000	0.517413	
mm_6754.1	chr1	84037351	84037551	-	1	NA	NA	NA	181510	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.025000	0.407960	
mm_2090.1	chr1	87700989	87701189	+	1	NA	NA	NA	-54922	NM_029846	77040	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.020000	0.482587	-32(CCTTATAAAGTG,+,0.00)
mm_74814.1	chr8	22701455	22701655	-	1	NA	NA	NA	5028	NM_010546	16150	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0.020000	0.557214	
mm_109096.1	chr12	104865288	104865488	+	1	NA	NA	NA	-312	NR_104435	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.020000	0.592040	
mm_18300.1	chr2	53138014	53138214	-	1	NA	NA	NA	53073	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.010000	0.303483	
mm_102146.1	chr11	53632018	53632218	-	1	NA	NA	NA	2584	NM_008355	16163	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	0.030000	0.512438	
mm_111917.1	chr12	108875425	108875625	-	1	NA	NA	NA	17673	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.010000	0.537313	
mm_162422.1	chr1	91611262	91611462	+	1	NA	NA	NA	70282	NM_023046	65247	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	0.015000	0.562189	
mm_96442.1	chr11	67384704	67384904	+	1	NA	NA	NA	57701	NM_001081250	544791	Mm.461064	NM_001081250	ENSMUSG00000060180	Myh13	MyHC-eo	myosin, heavy polypeptide 13, skeletal muscle	protein-coding	0.010000	0.338308	
mm_161745.1	chr17	33824504	33824704	+	1	NA	NA	NA	32	NR_103516	66416	Mm.29513	NM_023202	ENSMUSG00000041881	Ndufa7	14.5kDa|2400007M02Rik|CI-B14.5a	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	protein-coding	0.110000	0.611940	-87(CCTTTTATAGTC,+,0.00)
mm_16416.1	chr2	180120546	180120746	+	1	NA	NA	NA	1280	NM_144500	228983	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	0.010000	0.343284	
mm_18383.1	chr2	60098674	60098874	-	1	NA	NA	NA	26966	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.040000	0.467662	
mm_92113.1	chr10	63203785	63203985	-	1	NA	NA	NA	67	NM_182992	68802	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	0.040000	0.512438	
mm_1248.1	chr1	62810002	62810202	+	1	NA	NA	NA	-15370	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.010000	0.532338	
mm_104882.1	chr11	99521238	99521438	-	1	NA	NA	NA	-80	NM_213730	237934	Mm.484091	NM_213730	ENSMUSG00000064165	Krt39	4732494G06Rik|Ka35	keratin 39	protein-coding	0.015000	0.507463	-33(GGCTATATAAGC,-,0.00)
mm_267.1	chr1	20951521	20951721	+	1	NA	NA	NA	-5	NM_027974	71877	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	0.065000	0.646766	
mm_159599.1	chr4	127053080	127053280	-	1	NA	NA	NA	7952	NM_026670	68310	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	0.010000	0.457711	
mm_151113.1	chr19	47864364	47864564	+	1	NA	NA	NA	-1081	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.020000	0.472637	
mm_149622.1	chr19	16955970	16956170	+	1	NA	NA	NA	-48	NM_181348	353211	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.095000	0.726368	
mm_147541.1	chr18	53744581	53744781	-	1	NA	NA	NA	-134	NM_178686	225523	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	0.080000	0.666667	
mm_57959.1	chr6	135241278	135241478	-	1	NA	NA	NA	6506	NM_001080552	14840	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	0.030000	0.557214	
mm_50231.1	chr6	42350951	42351151	+	1	NA	NA	NA	1223	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.025000	0.666667	
mm_166913.1	chr7	30100742	30100942	+	1	NA	NA	NA	5766	NM_011981	26466	Mm.195092	NM_011981	ENSMUSG00000049421	Zfp260	AI480997|Ozrf1|PEX1|Zfp63|Znf260	zinc finger protein 260	protein-coding	0.005000	0.398010	
mm_34192.1	chr4	140701849	140702049	+	1	NA	NA	NA	476	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.105000	0.636816	
mm_162994.1	chr11	28853695	28853895	+	1	NA	NA	NA	590	NM_146015	216616	Mm.44176	NM_146015	ENSMUSG00000020467	Efemp1	-	epidermal growth factor-containing fibulin-like extracellular matrix protein 1	protein-coding	0.010000	0.527363	87(GCTTTAAGAGTG,+,0.00)
mm_16990.1	chr2	18219387	18219587	-	1	NA	NA	NA	154902	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.025000	0.507463	
mm_70097.1	chr7	142660883	142661083	-	1	NA	NA	NA	288	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.085000	0.681592	
mm_129534.1	chr15	79328038	79328238	-	1	NA	NA	NA	233	NM_016915	53357	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0.065000	0.631841	
mm_90170.1	chr10	119502050	119502250	+	1	NA	NA	NA	48116	NM_001277293	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding	0.000000	0.388060	
mm_37502.1	chr4	123718104	123718304	-	1	NA	NA	NA	-18	NM_001030274	595136	Mm.42805	NM_001030274	ENSMUSG00000028648	Ndufs5	AI256693	NADH dehydrogenase (ubiquinone) Fe-S protein 5	protein-coding	0.095000	0.651741	
mm_18399.1	chr2	60263456	60263656	-	1	NA	NA	NA	20928	NM_025422	66205	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.005000	0.368159	
mm_90550.1	chr10	128096809	128097009	+	1	NA	NA	NA	4126	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.100000	0.751244	
mm_141995.1	chr17	35186886	35187086	-	1	NA	NA	NA	1454	NM_010734	16988	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	0.010000	0.527363	
mm_26460.1	chr3	143017059	143017259	+	1	NA	NA	NA	-135155	NM_178654	109333	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	0.005000	0.407960	
mm_169816.1	chr16	20537596	20537796	+	1	NA	NA	NA	2216	NM_009679	11773	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.015000	0.532338	
mm_148219.1	chr18	80236779	80236979	-	1	NA	NA	NA	10223	NM_001136181	66255	Mm.272341	NM_001136181	ENSMUSG00000078963	Hsbp1l1	1810005K13Rik	heat shock factor binding protein 1-like 1	protein-coding	0.060000	0.592040	
mm_108281.1	chr12	79040379	79040579	+	1	NA	NA	NA	11316	NM_181073	211945	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	0.025000	0.542289	
mm_150062.1	chr19	29385520	29385720	+	1	NA	NA	NA	18182	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.015000	0.497512	
mm_94256.1	chr11	3332373	3332573	+	1	NA	NA	NA	1742	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.060000	0.631841	
mm_40623.1	chr5	64810140	64810340	+	1	NA	NA	NA	6717	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.030000	0.537313	
mm_101485.1	chr11	31369797	31369997	-	1	NA	NA	NA	164	NM_011491	20856	Mm.32506	NM_011491	ENSMUSG00000020303	Stc2	AW125853|Stc2l|mustc2	stanniocalcin 2	protein-coding	0.060000	0.661692	
mm_92135.1	chr10	66698023	66698223	-	1	NA	NA	NA	222261	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.040000	0.542289	
mm_29190.1	chr3	106547654	106547854	-	1	NA	NA	NA	-44	NM_001286986	67171	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0.090000	0.631841	
mm_87310.1	chr10	42761474	42761674	+	1	NA	NA	NA	78	NM_153055	140740	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0.175000	0.771144	
mm_89089.1	chr10	83971265	83971465	+	1	NA	NA	NA	248500	NM_001145198	69784	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	0.010000	0.497512	
mm_35057.1	chr4	6355399	6355599	-	1	NA	NA	NA	-10181	NM_016807	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.005000	0.383085	-22(TTCTCTAAAAAG,-,0.00)
mm_16743.1	chr2	9593896	9594096	-	1	NA	NA	NA	284604	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.010000	0.537313	
mm_88322.1	chr10	75564493	75564693	+	1	NA	NA	NA	-4069	NM_001305992	14598	Mm.4559	NM_008116	ENSMUSG00000006345	Ggt1	CD224|GGT|GGT 1|GGT-1|Ggtp|dwg	gamma-glutamyltransferase 1	protein-coding	0.005000	0.537313	
mm_134261.1	chr16	13750698	13750898	-	1	NA	NA	NA	-20314	NM_011987	26565	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	0.025000	0.512438	-29(TTCTATAAGAGC,-,0.00)
mm_23590.1	chr3	64949115	64949315	+	1	NA	NA	NA	-104472	NR_003962	319210	Mm.246646	NM_175670	ENSMUSG00000097538	Vmn2r-ps11	4930518C23Rik	vomeronasal 2, receptor, pseudogene 11	pseudo	0.035000	0.537313	
mm_73883.1	chr8	119344853	119345053	+	1	NA	NA	NA	415	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.045000	0.547264	
mm_27178.1	chr3	34351578	34351778	-	1	NA	NA	NA	-208703	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA	0.010000	0.467662	
mm_26148.1	chr3	138107156	138107356	+	1	NA	NA	NA	24121	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	0.030000	0.462687	
mm_169971.1	chr17	13998863	13999063	-	1	NA	NA	NA	50590	NM_001122977	635895	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.000000	0.582090	
mm_134490.1	chr16	18630016	18630216	-	1	NA	NA	NA	-178	NM_213614	18951	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.080000	0.691542	
mm_131767.1	chr16	22892744	22892944	+	1	NA	NA	NA	829	NM_001276449	11625	Mm.197554	NM_013465	ENSMUSG00000022868	Ahsg	-	alpha-2-HS-glycoprotein	protein-coding	0.005000	0.363184	
mm_119186.1	chr14	32321915	32322115	+	1	NA	NA	NA	-4	NM_001081130	239017	Mm.318302	NM_001081130	ENSMUSG00000021913	Ogdhl	-	oxoglutarate dehydrogenase-like	protein-coding	0.140000	0.706468	
mm_5955.1	chr1	56971221	56971421	-	1	NA	NA	NA	13	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.040000	0.601990	
mm_134579.1	chr16	20405461	20405661	-	1	NA	NA	NA	20833	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.015000	0.487562	
mm_70846.1	chr8	23446775	23446975	+	1	NA	NA	NA	35373	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding	0.025000	0.437811	
mm_152640.1	chr19	12526287	12526487	-	1	NA	NA	NA	-24391	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.000000	0.303483	
mm_18381.1	chr2	60049196	60049396	-	1	NA	NA	NA	76444	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.010000	0.412935	
mm_139289.1	chr17	48300319	48300519	+	1	NA	NA	NA	381	NM_001033405	328833	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0.025000	0.611940	
mm_121105.1	chr14	101117059	101117259	+	1	NA	NA	NA	82910	NM_029680	76627	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	0.000000	0.457711	
mm_112472.1	chr13	5868417	5868617	+	1	NA	NA	NA	7028	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.015000	0.427861	
mm_80987.1	chr9	103226738	103226938	+	1	NA	NA	NA	3448	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.055000	0.537313	
mm_53835.1	chr6	148212126	148212326	+	1	NA	NA	NA	-62	NR_015615	320737	Mm.137858	NR_015615		4732416N19Rik	-	RIKEN cDNA 4732416N19 gene	ncRNA	0.080000	0.582090	
mm_82315.1	chr9	7872931	7873131	-	1	NA	NA	NA	139	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.040000	0.646766	
mm_56131.1	chr6	87672061	87672261	-	1	NA	NA	NA	7	NM_024251	72103	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding	0.035000	0.527363	-1(CAGTTTTTAAGC,-,0.00)
mm_129563.1	chr15	79546454	79546654	-	1	NA	NA	NA	5	NM_199079	67040	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.115000	0.636816	
mm_10966.1	chr2	25702394	25702594	+	1	NA	NA	NA	2420	NM_153558	227627	Mm.44630	NM_153558	ENSMUSG00000062061	Obp2a	BC027556|Lcn13	odorant binding protein 2A	protein-coding	0.005000	0.497512	
mm_38194.1	chr4	135380672	135380872	-	1	NA	NA	NA	4900	NM_001168498	230822	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	0.040000	0.611940	
mm_9674.1	chr1	178331030	178331230	-	1	NA	NA	NA	6654	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.010000	0.427861	
mm_42081.1	chr5	110176716	110176916	+	1	NA	NA	NA	115	NM_008146	269682	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	0.075000	0.611940	
mm_21052.1	chr2	152622982	152623182	-	1	NA	NA	NA	-29	NM_001039122	654459	Mm.358531	NM_001039122	ENSMUSG00000074678	Defb25	BD-25|OTTMUSG00000015862|mBD-25	defensin beta 25	protein-coding	0.020000	0.567164	-32(GCCCATAAAAGC,-,0.00)
mm_105692.1	chr11	107794550	107794750	-	1	NA	NA	NA	-186	NM_019431	54377	Mm.103724	NM_019431	ENSMUSG00000020723	Cacng4	AI413107|AW491861	calcium channel, voltage-dependent, gamma subunit 4	protein-coding	0.185000	0.865672	
mm_152506.1	chr19	11196621	11196821	-	1	NA	NA	NA	2	NM_198224	73466	Mm.272723	NM_198224	ENSMUSG00000057240	Ms4a13	1700060E18Rik|Tetm4.2	membrane-spanning 4-domains, subfamily A, member 13	protein-coding	0.045000	0.626866	
mm_170261.1	chr18	15011125	15011325	+	1	NA	NA	NA	22230	NR_045372	74456	Mm.391075	NR_045372		4933424G05Rik	-	RIKEN cDNA 4933424G05 gene	ncRNA	0.055000	0.611940	
mm_2256.1	chr1	91107213	91107413	+	1	NA	NA	NA	-37790	NM_001033408	329207	Mm.295940	NM_001033408	ENSMUSG00000070732	Rbm44	Gm817	RNA binding motif protein 44	protein-coding	0.040000	0.552239	
mm_100261.1	chr11	117332284	117332484	+	1	NA	NA	NA	71	NM_001113488	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.055000	0.666667	
mm_43957.1	chr5	145235960	145236160	+	1	NA	NA	NA	4301	NM_028298	72611	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	0.005000	0.447761	
mm_146425.1	chr18	84851240	84851440	+	1	NA	NA	NA	-74	NM_025797	109672	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.045000	0.646766	
mm_60313.1	chr7	44198023	44198223	+	1	NA	NA	NA	-68	NM_008693	18050	Mm.439740	NM_008693	ENSMUSG00000066515	Klk1b3	Ngfg|gamma-NGF|mGk-3	kallikrein 1-related peptidase b3	protein-coding	0.005000	0.552239	50(GGGTTTTTAAAG,-,0.00),52(GTTTTTAAAGTC,+,0.00)
mm_39375.1	chr5	12383246	12383446	+	1	NA	NA	NA	180	NM_028882	108151	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.040000	0.582090	
mm_98043.1	chr11	85549494	85549694	+	1	NA	NA	NA	170150	NR_045875	71489	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.005000	0.532338	
mm_165673.1	chr3	89402503	89402703	-	1	NA	NA	NA	47	NM_020517	57275	Mm.482283	NM_020517	ENSMUSG00000078173	Lenep	AU018355|Lep503	lens epithelial protein	protein-coding	0.015000	0.577114	
mm_115225.1	chr13	109837682	109837882	+	1	NA	NA	NA	-66027	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.020000	0.512438	
mm_10114.1	chr2	3713423	3713623	+	1	NA	NA	NA	65	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.150000	0.746269	
mm_32600.1	chr4	111972744	111972944	+	1	NA	NA	NA	-83	NM_177818	328505	Mm.226771	NM_177818	ENSMUSG00000049214	Skint7	C130057D23Rik	selection and upkeep of intraepithelial T cells 7	protein-coding	0.005000	0.398010	49(CTTTTTATAGAA,+,0.00)
mm_169404.1	chr14	50785406	50785606	-	1	NA	NA	NA	14	NM_177625	219022	Mm.276362	NM_177625	ENSMUSG00000006288	Ttc5	-	tetratricopeptide repeat domain 5	protein-coding	0.040000	0.562189	
mm_135118.1	chr16	35841088	35841288	-	1	NA	NA	NA	30194	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.010000	0.427861	
mm_121223.1	chr14	103055280	103055480	+	1	NA	NA	NA	8368	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.025000	0.477612	
mm_51574.1	chr6	83758674	83758874	+	1	NA	NA	NA	3734	NR_105027	67934	Mm.126190	NR_105027	ENSMUSG00000099354	1700124L16Rik	-	RIKEN cDNA 1700124L16 gene	ncRNA	0.010000	0.313433	
mm_15397.1	chr2	156721539	156721739	+	1	NA	NA	NA	360	NM_001042487	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.015000	0.537313	
mm_141007.1	chr17	24960537	24960737	-	1	NA	NA	NA	-14	NM_198937	52009	Mm.371601	NM_198937	ENSMUSG00000024165	Hn1l	2810430B18Rik|AL022629|C16orf34|D17Ertd441e	hematological and neurological expressed 1-like	protein-coding	0.125000	0.716418	
mm_53501.1	chr6	135362632	135362832	+	1	NA	NA	NA	-199	NM_010128	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.015000	0.477612	
mm_57704.1	chr6	128543217	128543417	-	1	NA	NA	NA	-16597	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.025000	0.542289	
mm_3423.1	chr1	146495590	146495790	+	1	NA	NA	NA	24	NM_153539	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.000000	0.447761	
mm_18023.1	chr2	38613639	38613839	-	1	NA	NA	NA	30167	NM_011187	19177	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0.010000	0.432836	
mm_65757.1	chr7	28629658	28629858	-	1	NA	NA	NA	1257	NM_175319	101744	Mm.26022	NM_175319	ENSMUSG00000037469	Acp7	AU017076|C330005M16Rik|Papl	acid phosphatase 7, tartrate resistant	protein-coding	0.025000	0.517413	
mm_91324.1	chr10	25200113	25200313	-	1	NA	NA	NA	-43	NM_001347460	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.060000	0.636816	
mm_200.1	chr1	16105275	16105475	+	1	NA	NA	NA	-507	NM_133832	98711	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.115000	0.756219	
mm_97272.1	chr11	75765302	75765502	+	1	NA	NA	NA	-30407	NR_136933	102641247	Mm.411386	NR_136932		Gm12339	OTTMUSG00000006218	predicted gene 12339	ncRNA	0.035000	0.532338	
mm_160641.1	chr9	108826074	108826274	+	1	NA	NA	NA	-146	NM_080437	107934	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	0.110000	0.776119	
mm_124762.1	chr15	6656450	6656650	+	1	NA	NA	NA	-51831	NM_030168	78757	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.005000	0.363184	
mm_138807.1	chr17	39501872	39502072	+	1	NA	NA	NA	-34170	NM_001255977	100043300	Mm.27927	NM_001255977	ENSMUSG00000096345	Esp16	Gm4345	exocrine gland secreted peptide 16	protein-coding	0.010000	0.333333	
mm_79168.1	chr9	47850562	47850762	+	1	NA	NA	NA	-32454	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.010000	0.323383	
mm_37607.1	chr4	126753537	126753737	-	1	NA	NA	NA	82	NM_001035525	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.090000	0.676617	
mm_124748.1	chr15	6619618	6619818	+	1	NA	NA	NA	39871	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.035000	0.587065	
mm_49081.1	chr6	6560311	6560511	+	1	NA	NA	NA	18247	NM_009169	20422	Mm.2469	NM_009169	ENSMUSG00000042541	Shfm1	DSS1|Shfdg1|Shfg	split hand/foot malformation (ectrodactyly) type 1	protein-coding	0.005000	0.383085	
mm_145781.1	chr18	65075986	65076186	+	1	NA	NA	NA	52559	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.015000	0.527363	
mm_136987.1	chr17	17294349	17294549	+	1	NA	NA	NA	6	NM_001324550	100862203	Mm.484235	NM_001324550		Gm6712	EG626854	predicted gene 6712	protein-coding	0.025000	0.497512	
mm_81449.1	chr9	109816502	109816702	+	1	NA	NA	NA	-25	NM_183136	78709	Mm.99613	NM_183136	ENSMUSG00000050074	Spink8	C630041L24Rik	serine peptidase inhibitor, Kazal type 8	protein-coding	0.025000	0.517413	
mm_45107.1	chr5	44799834	44800034	-	1	NA	NA	NA	-188	NM_001077398	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0.000000	0.437811	-1(TTCTTTAAAAAC,-,0.00)
mm_127049.1	chr15	96654882	96655082	+	1	NA	NA	NA	-12069	NM_001166458	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.020000	0.522388	-95(AGCTTTATGAGG,-,0.00)
mm_161110.1	chr12	104112624	104112824	+	1	NA	NA	NA	0	NM_028740	74069	Mm.159128	NM_028740	ENSMUSG00000041536	Serpina3a	-	serine (or cysteine) peptidase inhibitor, clade A, member 3A	protein-coding	0.055000	0.472637	-34(TGCTTTATAAAG,-,0.00),-32(CTTTATAAAGAA,+,0.00)
mm_84521.1	chr9	67043738	67043938	-	1	NA	NA	NA	33	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.130000	0.756219	
mm_47469.1	chr5	123684181	123684381	-	1	NA	NA	NA	80	NM_019765	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.135000	0.746269	
mm_170252.1	chr1	80967739	80967939	+	1	NA	NA	NA	-109478	NM_172849	241134	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	0.020000	0.497512	-29(GTGTTTTTAAGG,-,0.00),-27(GTTTTTAAGGTA,+,0.00)
mm_64861.1	chr7	13037792	13037992	-	1	NA	NA	NA	86	NM_145578	22192	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0.150000	0.771144	
mm_138282.1	chr17	34609914	34610114	+	1	NA	NA	NA	1000	NM_018862	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.035000	0.522388	
mm_67030.1	chr7	66689383	66689583	-	1	NA	NA	NA	78	NM_080443	117589	Mm.34785	NM_080443	ENSMUSG00000030509	Asb7	AI449039|Asb-7|D030055C23Rik	ankyrin repeat and SOCS box-containing 7	protein-coding	0.045000	0.636816	
mm_147810.1	chr18	61719225	61719425	-	1	NA	NA	NA	7006	NM_021296	17714	Mm.269657	NM_021296	ENSMUSG00000024580	Grpel2	mt-GrpE#2|mt-Grpel2	GrpE-like 2, mitochondrial	protein-coding	0.015000	0.497512	
mm_124668.1	chr15	6386767	6386967	+	1	NA	NA	NA	119	NM_001310446	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.070000	0.597015	-32(GGCTATTTAAGT,-,0.00)
mm_80221.1	chr9	72570702	72570902	+	1	NA	NA	NA	38562	NM_001033536	319758	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	0.005000	0.288557	
mm_67790.1	chr7	97721417	97721617	-	1	NA	NA	NA	16730	NM_175105	66333	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.015000	0.447761	
mm_168105.1	chr10	14567300	14567500	-	1	NA	NA	NA	-22364	NM_001002268	215798	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.025000	0.447761	
mm_131062.1	chr16	4558619	4558819	+	1	NA	NA	NA	1001	NM_031182	83383	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.100000	0.646766	
mm_155787.1	chrX	96713392	96713592	+	1	NA	NA	NA	24	NM_029536	76206	Mm.256065	NM_029536	ENSMUSG00000031210	Gpr165	6530406P05Rik	G protein-coupled receptor 165	protein-coding	0.035000	0.587065	-57(TTCTATAAAGGG,-,0.00)
mm_35164.1	chr4	14621400	14621600	-	1	NA	NA	NA	278	NM_145947	208890	Mm.483839	NM_145947	ENSMUSG00000040569	Slc26a7	-	solute carrier family 26, member 7	protein-coding	0.015000	0.437811	
mm_59216.1	chr7	24593769	24593969	+	1	NA	NA	NA	-6228	NM_001033205	101544	Mm.20117	NM_001033205	ENSMUSG00000066721	Zfp575	AI326876|Znf575	zinc finger protein 575	protein-coding	0.100000	0.711443	-43(CCTTTAAGGCAG,+,0.00)
mm_84209.1	chr9	60688056	60688256	-	1	NA	NA	NA	-22	NM_001146046	102747	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0.055000	0.547264	
mm_55310.1	chr6	54972536	54972736	-	1	NA	NA	NA	-24	NM_172729	107607	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.080000	0.676617	
mm_162301.1	chr1	36325710	36325910	-	1	NA	NA	NA	18077	NM_001172205	214855	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.005000	0.507463	
mm_90793.1	chr10	7064178	7064378	-	1	NA	NA	NA	-41093	NM_001033391	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.015000	0.467662	
mm_82102.1	chr9	123062298	123062498	+	1	NA	NA	NA	27657	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.000000	0.452736	-98(CTCTCTAAAGAG,-,0.00)
mm_36290.1	chr4	63997036	63997236	-	1	NA	NA	NA	49879	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding	0.000000	0.412935	
mm_70640.1	chr8	13907732	13907932	+	1	NA	NA	NA	26	NM_025785	66822	Mm.37950	NM_025785	ENSMUSG00000038365	Fbxo25	9130015I06Rik|AI649137|Fbx25	F-box protein 25	protein-coding	0.110000	0.716418	
mm_104800.1	chr11	98774913	98775113	-	1	NA	NA	NA	364	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.025000	0.562189	
mm_165846.1	chr4	8625634	8625834	+	1	NA	NA	NA	-64672	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.000000	0.442786	
mm_71092.1	chr8	34820035	34820235	+	1	NA	NA	NA	12525	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.005000	0.502488	
mm_17809.1	chr2	33640778	33640978	-	1	NA	NA	NA	-315	NR_046275	100504399	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	0.150000	0.810945	
mm_35520.1	chr4	41206192	41206392	-	1	NA	NA	NA	68843	NM_026872	68926	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0.025000	0.522388	-98(TCTTTTATAAGC,+,0.00)
mm_171228.1	chr3	65643255	65643455	+	1	NA	NA	NA	-15933	NR_106200	102465905		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	0.005000	0.492537	
mm_14077.1	chr2	124609793	124609993	+	1	NA	NA	NA	-403	NM_199238	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.140000	0.771144	
mm_146773.1	chr18	20059194	20059394	-	1	NA	NA	NA	260	NM_013505	13506	Mm.280547	NM_013505	ENSMUSG00000024331	Dsc2	AW228162	desmocollin 2	protein-coding	0.075000	0.681592	
mm_23079.1	chr3	36552539	36552739	+	1	NA	NA	NA	33	NM_019393	50911	Mm.116711	NM_019393	ENSMUSG00000027714	Exosc9	PM/Scl-75|Pmscl1|RRP45|p5|p6	exosome component 9	protein-coding	0.120000	0.666667	
mm_56719.1	chr6	115592398	115592598	-	1	NA	NA	NA	78	NM_001101431	70291	Mm.133694	NM_001101431	ENSMUSG00000068011	Mkrn2os	2510049J12Rik	makorin, ring finger protein 2, opposite strand	protein-coding	0.015000	0.487562	
mm_132588.1	chr16	38443325	38443525	+	1	NA	NA	NA	9264	NM_007414	11544	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.020000	0.477612	
mm_155059.1	chrX	42432385	42432585	+	1	NA	NA	NA	-70080	NM_011364	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	0.005000	0.462687	31(GTCTTTTAAAAA,-,0.00),34(TTTTAAAAAGGC,+,0.00)
mm_60973.1	chr7	48877879	48878079	+	1	NA	NA	NA	3062	NM_001013368	108961	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.040000	0.512438	
mm_30587.1	chr4	5644174	5644374	+	1	NA	NA	NA	95	NM_173426	242297	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0.125000	0.736318	
mm_38612.1	chr4	141875217	141875417	-	1	NA	NA	NA	-397	NM_025994	27984	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	0.045000	0.601990	
mm_99302.1	chr11	101370618	101370818	+	1	NA	NA	NA	3002	NM_008061	14377	Mm.18064	NM_008061	ENSMUSG00000078650	G6pc	AW107337|G6Pase|G6pt|Glc-6-Pase	glucose-6-phosphatase, catalytic	protein-coding	0.030000	0.507463	
mm_142142.1	chr17	35979711	35979911	-	1	NA	NA	NA	14	NM_001282013	75210	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	0.125000	0.786070	
mm_74465.1	chr8	4217051	4217251	-	1	NA	NA	NA	161	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.070000	0.686567	
mm_149812.1	chr19	23893421	23893621	+	1	NA	NA	NA	134645	NM_177034	319924	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.165000	0.736318	
mm_39586.1	chr5	23485239	23485439	+	1	NA	NA	NA	50910	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.015000	0.373134	
mm_94577.1	chr11	11690108	11690308	+	1	NA	NA	NA	31	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.010000	0.552239	
mm_152870.1	chr19	24280483	24280683	-	1	NA	NA	NA	3	NM_008044	14297	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	0.140000	0.820896	
mm_76701.1	chr8	94434056	94434256	-	1	NA	NA	NA	947	NR_015514	320377	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0.030000	0.592040	
mm_30349.1	chr3	151748452	151748652	-	1	NA	NA	NA	1407	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.010000	0.442786	1(TGGCTTTAAAGC,-,0.00),3(GCTTTAAAGCTG,+,0.00)
mm_22950.1	chr3	32365216	32365416	+	1	NA	NA	NA	-173	NR_027966	67576	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	0.085000	0.646766	
mm_29067.1	chr3	103792459	103792659	-	1	NA	NA	NA	-996	NM_001301304	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.005000	0.398010	-58(TTCCTTAAAAGG,-,0.00),-56(CCTTAAAAGGTA,+,0.00)
mm_73433.1	chr8	106138315	106138515	+	1	NA	NA	NA	-1441	NM_176838	77411	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	0.030000	0.522388	-35(GACTATTTAAAC,-,0.00)
mm_109640.1	chr12	112795959	112796159	+	1	NA	NA	NA	-12916	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.015000	0.552239	
mm_33455.1	chr4	130783634	130783834	+	1	NA	NA	NA	-8803	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.020000	0.398010	
mm_11206.1	chr2	29191550	29191750	+	1	NA	NA	NA	56449	NM_001305805	171171	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	0.010000	0.547264	
mm_97671.1	chr11	79694808	79695008	+	1	NA	NA	NA	-17061	NR_029579	387188		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	0.000000	0.437811	
mm_172353.1	chr7	114706105	114706305	-	1	NA	NA	NA	-12438	NM_054084	116903	Mm.273838	NM_054084	ENSMUSG00000030666	Calcb	CGRP2|Calc2	calcitonin-related polypeptide, beta	protein-coding	0.045000	0.502488	75(TACTTTAAAAGA,-,0.00)
mm_151404.1	chr19	56548169	56548369	+	1	NA	NA	NA	8	NM_025811	66866	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.050000	0.477612	39(TCTTTTAAACGT,+,0.00)
mm_134394.1	chr16	17467669	17467869	-	1	NA	NA	NA	15784	NM_007764	12929	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	0.000000	0.417910	13(GGCCATTAAAGG,-,0.00),15(CCATTAAAGGGC,+,0.00)
mm_148791.1	chr19	6164395	6164595	+	1	NA	NA	NA	37	NM_028967	74481	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	4933430F08Rik	basic leucine zipper transcription factor, ATF-like 2	protein-coding	0.010000	0.557214	
mm_75420.1	chr8	46764961	46765161	-	1	NA	NA	NA	25316	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.010000	0.442786	29(GGGCTTTAAAGC,-,0.00)
mm_160757.1	chr10	82985678	82985878	+	1	NA	NA	NA	281	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.100000	0.716418	
mm_161852.1	chr18	15399921	15400121	-	1	NA	NA	NA	2978	NM_001308647	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.005000	0.512438	
mm_133841.1	chr16	96200479	96200679	+	1	NA	NA	NA	109	NM_015825	50795	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0.045000	0.616915	
mm_53954.1	chr6	5298369	5298569	-	1	NA	NA	NA	-96	NM_183308	330260	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	0.100000	0.671642	
mm_69348.1	chr7	130242174	130242374	-	1	NA	NA	NA	24534	NM_010207	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	0.000000	0.373134	
mm_91520.1	chr10	37138659	37138859	-	1	NA	NA	NA	167	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.035000	0.422886	
mm_97228.1	chr11	75651421	75651621	+	1	NA	NA	NA	12	NM_008659	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.105000	0.746269	
mm_31440.1	chr4	48540361	48540561	+	1	NA	NA	NA	-38	NM_028137	66665	Mm.140749	NM_028137	ENSMUSG00000039693	Msantd3	2410046L14Rik|2810429P03Rik|5730528L13Rik|Mysantd3	Myb/SANT-like DNA-binding domain containing 3	protein-coding	0.205000	0.900498	
mm_56311.1	chr6	92183905	92184105	-	1	NA	NA	NA	18	NM_025578	64658	Mm.87062	NM_025578	ENSMUSG00000014551	Mrps25	2810429N01Rik|Rpms25	mitochondrial ribosomal protein S25	protein-coding	0.120000	0.696517	
mm_172790.1	chr9	108560366	108560566	+	1	NA	NA	NA	-35	NM_011830	23918	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine 5'-phosphate dehydrogenase 2	protein-coding	0.135000	0.646766	
mm_115454.1	chr13	118732726	118732926	+	1	NA	NA	NA	18127	NM_008002	14165	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	0.005000	0.348259	
mm_77644.1	chr8	124434374	124434574	-	1	NA	NA	NA	-538	NM_171824	209966	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	0.160000	0.796020	
mm_137027.1	chr17	17887014	17887214	+	1	NA	NA	NA	-710	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.010000	0.422886	
mm_68021.1	chr7	100964259	100964459	-	1	NA	NA	NA	7	NM_183168	233571	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.010000	0.582090	
mm_135345.1	chr16	43628757	43628957	-	1	NA	NA	NA	-11798	NR_030576	100124467		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.015000	0.398010	
mm_75343.1	chr8	43306928	43307128	-	1	NA	NA	NA	-19	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.040000	0.597015	
mm_166515.1	chr6	15745202	15745402	-	1	NA	NA	NA	24641	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.005000	0.353234	
mm_95913.1	chr11	58207227	58207427	+	1	NA	NA	NA	-7650	NM_019440	54396	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	0.005000	0.472637	
mm_118733.1	chr14	22258755	22258955	+	1	NA	NA	NA	239143	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.000000	0.338308	
mm_117386.1	chr13	73346869	73347069	-	1	NA	NA	NA	415	NR_045293	432777	Mm.415319	NR_045293		D630045M09Rik	AU019512	RIKEN cDNA D630045M09 gene	ncRNA	0.015000	0.562189	
mm_158120.1	chrX	102252063	102252263	-	1	NA	NA	NA	18	NM_001276466	12705	Mm.2390	NM_007709	ENSMUSG00000051159	Cited1	AI316840|AU019144|Msg1	Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1	protein-coding	0.090000	0.641791	-65(CGCCTTTAAAGG,-,0.00),-64(GCCTTTAAAGGG,+,0.00),-64(GCCTTTAAAGGG,-,0.00),-63(CCTTTAAAGGGC,+,0.00),-62(CTTTAAAGGGCC,+,0.00),-34(CGCTATAAAATG,-,0.00)
mm_26632.1	chr3	152921054	152921254	+	1	NA	NA	NA	61053	NM_012028	26938	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.005000	0.383085	
mm_133515.1	chr16	90741111	90741311	+	1	NA	NA	NA	2887	NM_029844	77037	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.005000	0.383085	
mm_147435.1	chr18	46476745	46476945	-	1	NA	NA	NA	-11029	NR_045438	72076	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.030000	0.477612	
mm_130216.1	chr15	95759146	95759346	-	1	NA	NA	NA	-7655	NR_131148	629300	Mm.247258	NR_131148		Gm6961	EG629300	predicted gene 6961	ncRNA	0.025000	0.492537	
mm_44482.1	chr5	23506649	23506849	-	1	NA	NA	NA	72320	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.010000	0.323383	
mm_153443.1	chr19	40994184	40994384	-	1	NA	NA	NA	251	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.030000	0.507463	
mm_84159.1	chr9	59539897	59540097	-	1	NA	NA	NA	457	NM_010421	15211	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.095000	0.666667	
mm_142217.1	chr17	37168565	37168765	-	1	NA	NA	NA	-16695	NM_001011813	258051	Mm.233576	NM_001011813	ENSMUSG00000091601	Olfr93	MOR256-39P	olfactory receptor 93	protein-coding	0.000000	0.333333	27(TCCTTTAAAAAA,-,0.00)
mm_100209.1	chr11	116853369	116853569	+	1	NA	NA	NA	-375	NM_011358	20382	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0.085000	0.676617	
mm_109348.1	chr12	109604928	109605128	+	1	NA	NA	NA	1083	NR_028261	75745	Mm.293263	NR_028261		Rian	5530401N18Rik|C130089L09Rik|Meg8	RNA imprinted and accumulated in nucleus	ncRNA	0.015000	0.432836	
mm_173065.1	chrX	134054380	134054580	-	1	NA	NA	NA	-4696	NM_001290398	108062	Mm.67938	NM_133196	ENSMUSG00000031256	Cstf2	C630034J23Rik|Cstf64|mir-3112	cleavage stimulation factor, 3' pre-RNA subunit 2	protein-coding	0.000000	0.407960	
mm_1572.1	chr1	74261028	74261228	+	1	NA	NA	NA	-17472	NM_174985	227289	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.005000	0.427861	-3(TCTTTAATACCC,+,0.00)
mm_6763.1	chr1	84105561	84105761	-	1	NA	NA	NA	113300	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.437811	
mm_132252.1	chr16	32751483	32751683	+	1	NA	NA	NA	15697	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.010000	0.457711	
mm_6482.1	chr1	74093482	74093682	-	1	NA	NA	NA	30865	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.015000	0.472637	47(TCCTCTAAGAGG,-,0.00)
mm_57768.1	chr6	129236108	129236308	-	1	NA	NA	NA	1837	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.010000	0.457711	
mm_9153.1	chr1	170927453	170927653	-	1	NA	NA	NA	30	NM_001160215	98752	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0.010000	0.472637	
mm_14745.1	chr2	144466232	144466432	+	1	NA	NA	NA	1156	NR_038065	171588	Mm.450554	NR_038065	ENSMUSG00000083674	Gm38402	-	zinc finger protein pseudogene	pseudo	0.020000	0.517413	
mm_110946.1	chr12	76643636	76643836	-	1	NA	NA	NA	66811	NM_013675	20741	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0.005000	0.442786	
mm_98583.1	chr11	95748453	95748653	+	1	NA	NA	NA	-514	NM_201609	268469	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	0.010000	0.497512	
mm_68260.1	chr7	105592097	105592297	-	1	NA	NA	NA	7919	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.005000	0.502488	
mm_126043.1	chr15	76904541	76904741	+	1	NA	NA	NA	570	NM_012053	26961	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0.070000	0.611940	
mm_158769.1	chrX	166585608	166585808	-	1	NA	NA	NA	8	NM_019397	54156	Mm.37707	NM_019397	ENSMUSG00000000402	Egfl6	Maeg	EGF-like-domain, multiple 6	protein-coding	0.065000	0.661692	
mm_19872.1	chr2	114048062	114048262	-	1	NA	NA	NA	4713	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.020000	0.497512	
mm_5004.1	chr1	191977297	191977497	+	1	NA	NA	NA	27	NM_023727	74023	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	0.010000	0.587065	
mm_85190.1	chr9	96719457	96719657	-	1	NA	NA	NA	12118	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.090000	0.691542	
mm_166843.1	chr7	19517645	19517845	+	1	NA	NA	NA	-986	NM_027116	69547	Mm.77325	NM_027116	ENSMUSG00000060621	Nkpd1	2310015G09Rik	NTPase, KAP family P-loop domain containing 1	protein-coding	0.020000	0.572139	
mm_105846.1	chr11	113708862	113709062	-	1	NA	NA	NA	564	NM_026682	52670	Mm.229207	NM_026682	ENSMUSG00000018727	Cpsf4l	0610010C04Rik|1500000C01Rik|D11Ertd636e	cleavage and polyadenylation specific factor 4-like	protein-coding	0.045000	0.572139	
mm_39986.1	chr5	32459896	32460096	+	1	NA	NA	NA	1026	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.030000	0.368159	66(GAGCTTAAAAGG,-,0.00)
mm_129491.1	chr15	78802777	78802977	-	1	NA	NA	NA	165	NM_130859	105844	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	0.140000	0.771144	
mm_38185.1	chr4	135325080	135325280	-	1	NA	NA	NA	28034	NM_016799	51796	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.050000	0.631841	
mm_131268.1	chr16	10835427	10835627	+	1	NA	NA	NA	468	NM_001162932	223970	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.030000	0.621891	
mm_67363.1	chr7	79838845	79839045	-	1	NA	NA	NA	3407	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.030000	0.582090	
mm_20723.1	chr2	136387712	136387912	-	1	NA	NA	NA	155	NM_172858	241656	Mm.131572	NM_172858	ENSMUSG00000039913	Pak7	2900083L08Rik|6430627N20|Pak5	p21 protein (Cdc42/Rac)-activated kinase 7	protein-coding	0.045000	0.616915	
mm_146606.1	chr18	9619344	9619544	-	1	NA	NA	NA	25	NM_007593	26369	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	0.055000	0.597015	
mm_93056.1	chr10	88682923	88683123	-	1	NA	NA	NA	0	NM_011461	20728	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	0.015000	0.393035	-76(GCCTTTTAAAAA,-,0.00),-75(CCTTTTAAAAAA,+,0.00)
mm_89698.1	chr10	97607156	97607356	+	1	NA	NA	NA	51	NM_008438	16545	Mm.6228	NM_008438	ENSMUSG00000019932	Kera	CNA2|SLRR2B	keratocan	protein-coding	0.000000	0.388060	
mm_40113.1	chr5	34898595	34898795	+	1	NA	NA	NA	-17220	NM_207277	403174	Mm.291225	NM_207277	ENSMUSG00000051246	Msantd1	A930005I04Rik|Gm144	Myb/SANT-like DNA-binding domain containing 1	protein-coding	0.005000	0.388060	
mm_29621.1	chr3	121427381	121427581	-	1	NA	NA	NA	940	NM_028044	71994	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0.060000	0.497512	
mm_124340.1	chr14	103844203	103844403	-	1	NA	NA	NA	173	NM_001136061	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.045000	0.567164	
mm_62681.1	chr7	109958177	109958377	+	1	NA	NA	NA	2145	NM_021494	19347	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	0.010000	0.402985	-41(CCTCTTAAGGCT,+,0.00),27(CACCATAAAAAG,-,0.00)
mm_136430.1	chr16	94317799	94317999	-	1	NA	NA	NA	-10523	NM_133229	170765	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	0.015000	0.512438	
mm_134401.1	chr16	17561147	17561347	-	1	NA	NA	NA	0	NM_029053	74685	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	0.040000	0.567164	
mm_16852.1	chr2	11634806	11635006	-	1	NA	NA	NA	-7886	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.005000	0.353234	
mm_166699.1	chr6	114316152	114316352	+	1	NA	NA	NA	33617	NM_178703	232333	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.010000	0.517413	
mm_50269.1	chr6	45060115	45060315	+	1	NA	NA	NA	154	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.020000	0.562189	
mm_68286.1	chr7	105633369	105633569	-	1	NA	NA	NA	102	NM_018880	55992	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	0.160000	0.810945	
mm_41217.1	chr5	88583415	88583615	+	1	NA	NA	NA	2	NM_027530	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.020000	0.517413	
mm_38579.1	chr4	141818183	141818383	-	1	NA	NA	NA	7722	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.005000	0.422886	-32(CTACATAAAAGG,-,0.00)
mm_157541.1	chrX	51205706	51205906	-	1	NA	NA	NA	184	NM_001310515	171170	Mm.295324	NM_134163	ENSMUSG00000036109	Mbnl3	A530038J18Rik|AI661274|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL	muscleblind-like 3 (Drosophila)	protein-coding	0.155000	0.766169	
mm_119439.1	chr14	46390688	46390888	+	1	NA	NA	NA	-119	NM_007554	12159	Mm.6813	NM_007554	ENSMUSG00000021835	Bmp4	Bmp-4|Bmp2b|Bmp2b-1|Bmp2b1	bone morphogenetic protein 4	protein-coding	0.050000	0.666667	
mm_157075.1	chrX	8892821	8893021	-	1	NA	NA	NA	568	NR_045448	102941	Mm.41588	NM_175327	ENSMUSG00000052364	B630019K06Rik	AI843180	novel protein similar to F-box and leucine-rich repeat protein 17 (Fbxl17)	pseudo	0.140000	0.761194	
mm_56525.1	chr6	99521119	99521319	-	1	NA	NA	NA	-226	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.050000	0.641791	
mm_164542.1	chr17	8283756	8283956	+	1	NA	NA	NA	43	NM_018819	55951	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	0.110000	0.666667	
mm_108142.1	chr12	76255199	76255399	+	1	NA	NA	NA	67	NM_138745	108156	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0.085000	0.656716	
mm_42410.1	chr5	115082169	115082369	+	1	NA	NA	NA	25693	NM_001271591	100502825	Mm.361657	NM_001271590		Rpl37rt	Gm13826|OTTMUSG00000014624	ribosomal protein L37, retrotransposed	protein-coding	0.020000	0.422886	
mm_5051.1	chr1	194938819	194939019	+	1	NA	NA	NA	98	NM_001111059	12490	Mm.29798	NM_133654	ENSMUSG00000016494	Cd34	AU040960	CD34 antigen	protein-coding	0.090000	0.711443	
mm_119543.1	chr14	48120863	48121063	+	1	NA	NA	NA	94	NM_033602	93834	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	0.190000	0.791045	
mm_38512.1	chr4	141394524	141394724	-	1	NA	NA	NA	3475	NM_001146307	12733	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	0.020000	0.537313	
mm_144529.1	chr18	25065986	25066186	+	1	NA	NA	NA	99879	NM_001142697	66648	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.020000	0.507463	
mm_70468.1	chr8	11952585	11952785	+	1	NA	NA	NA	112164	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	0.005000	0.437811	
mm_98102.1	chr11	86683962	86684162	+	1	NA	NA	NA	-19	NM_001098810	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.075000	0.562189	
mm_29764.1	chr3	127204743	127204943	-	1	NA	NA	NA	43538	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.015000	0.452736	
mm_164467.1	chr16	61056297	61056497	-	1	NA	NA	NA	-450866	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0.055000	0.631841	
mm_123281.1	chr14	61420739	61420939	-	1	NA	NA	NA	19108	NM_008466	16648	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0.000000	0.293532	
mm_142638.1	chr17	47422447	47422647	-	1	NA	NA	NA	-667	NM_001347584	75462	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.015000	0.447761	
mm_57028.1	chr6	122282851	122283051	-	1	NA	NA	NA	-118	NM_016970	50928	Mm.20434	NM_016970	ENSMUSG00000030114	Klrg1	2F1-Ag|MAFA|MAFA-L	killer cell lectin-like receptor subfamily G, member 1	protein-coding	0.020000	0.457711	
mm_71091.1	chr8	34818566	34818766	+	1	NA	NA	NA	11056	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.060000	0.661692	
mm_136082.1	chr16	84835372	84835572	-	1	NA	NA	NA	153	NM_016755	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.135000	0.736318	
mm_67862.1	chr7	99116660	99116860	-	1	NA	NA	NA	24384	NM_178635	78610	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.000000	0.323383	
mm_98724.1	chr11	96340708	96340908	+	1	NA	NA	NA	-2961	NM_010458	15410	Mm.342481	NM_010458	ENSMUSG00000048763	Hoxb3	Hox-2.7	homeobox B3	protein-coding	0.060000	0.606965	
mm_163244.1	chr11	105985690	105985890	+	1	NA	NA	NA	-96	NR_104047	100379610	Mm.754	NR_104047	ENSMUSG00000085297	Gm11651	OTTMUSG00000003114	predicted gene 11651	ncRNA	0.015000	0.532338	
mm_87184.1	chr10	39368934	39369134	+	1	NA	NA	NA	-765	NM_001122892	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.020000	0.492537	
mm_157572.1	chrX	52582836	52583036	-	1	NA	NA	NA	7093	NR_045367	100504594	Mm.447008	NR_045367	ENSMUSG00000055110	A630012P03Rik	-	RIKEN cDNA A630012P03 gene	ncRNA	0.010000	0.442786	
mm_168179.1	chr10	56497507	56497707	+	1	NA	NA	NA	120307	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.010000	0.447761	
mm_46755.1	chr5	112228855	112229055	-	1	NA	NA	NA	-7	NR_003718	330166	Mm.44854	NR_003718	ENSMUSG00000097767	Miat	3632434I06|A230057G18Rik|Rncr2|gomafu	myocardial infarction associated transcript (non-protein coding)	ncRNA	0.090000	0.671642	
mm_73843.1	chr8	117498206	117498406	+	1	NA	NA	NA	31	NM_172285	234779	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.100000	0.731343	
mm_64219.1	chr7	141562077	141562277	+	1	NA	NA	NA	-3	NM_007459	11772	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0.175000	0.781095	
mm_125811.1	chr15	74931610	74931810	+	1	NA	NA	NA	-23341	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.015000	0.537313	
mm_3779.1	chr1	156615782	156615982	+	1	NA	NA	NA	57095	NM_001136104	11352	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0.015000	0.512438	
mm_58301.1	chr6	146080943	146081143	-	1	NA	NA	NA	146896	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.015000	0.517413	
mm_45731.1	chr5	86327650	86327850	-	1	NA	NA	NA	-38442	NM_001030297	435845	Mm.359654	NM_001030297	ENSMUSG00000061184	Tmprss11c	Tmprss13	transmembrane protease, serine 11c	protein-coding	0.015000	0.447761	
mm_119391.1	chr14	41137521	41137721	+	1	NA	NA	NA	5833	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.005000	0.303483	
mm_115833.1	chr13	21286917	21287117	-	1	NA	NA	NA	5669	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.010000	0.422886	
mm_129488.1	chr15	78773346	78773546	-	1	NA	NA	NA	-1	NM_008595	17305	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.045000	0.701493	
mm_36772.1	chr4	102572069	102572269	-	1	NA	NA	NA	2109	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.015000	0.477612	
mm_140338.1	chr17	86809515	86809715	+	1	NA	NA	NA	55751	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.020000	0.592040	
mm_89212.1	chr10	86705767	86705967	+	1	NA	NA	NA	56	NM_001003939	103220	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	0.105000	0.547264	
mm_53012.1	chr6	123275760	123275960	+	1	NA	NA	NA	13753	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.000000	0.308458	
mm_24764.1	chr3	95499181	95499381	+	1	NA	NA	NA	71	NM_007802	13038	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.035000	0.467662	
mm_59516.1	chr7	27591642	27591842	+	1	NA	NA	NA	190	NM_001110208	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.110000	0.731343	
mm_71976.1	chr8	70594286	70594486	+	1	NA	NA	NA	-95	NM_023627	71780	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.090000	0.636816	
mm_42508.1	chr5	115519569	115519769	+	1	NA	NA	NA	12993	NM_133915	19303	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0.005000	0.457711	
mm_77172.1	chr8	111690273	111690473	-	1	NA	NA	NA	637	NM_025583	66473	Mm.34374	NM_025583	ENSMUSG00000031957	Ctrb1	2200008D09Rik|AI504462|Ctrb|Prt-2	chymotrypsinogen B1	protein-coding	0.000000	0.477612	
mm_145866.1	chr18	65462655	65462855	+	1	NA	NA	NA	31758	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.363184	
mm_36894.1	chr4	107680781	107680981	-	1	NA	NA	NA	3281	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.015000	0.492537	
mm_172216.1	chr6	62407013	62407213	+	1	NA	NA	NA	-849744	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.005000	0.502488	-25(GGGTATTTAAGG,-,0.00),-23(GTATTTAAGGCC,+,0.00)
mm_108686.1	chr12	86836845	86837045	+	1	NA	NA	NA	47869	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.045000	0.597015	
mm_66498.1	chr7	45061651	45061851	-	1	NA	NA	NA	-99	NM_022999	65116	Mm.379098	NM_022999	ENSMUSG00000007837	Prrg2	1600014G02Rik|2510041M06Rik|N4WBP1	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	protein-coding	0.025000	0.587065	
mm_112976.1	chr13	21293780	21293980	+	1	NA	NA	NA	-1194	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.015000	0.422886	-48(GCATATAAAGCA,+,0.00)
mm_171793.1	chr5	115845202	115845402	+	1	NA	NA	NA	-354	NM_007708	12704	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0.075000	0.646766	
mm_98937.1	chr11	98358605	98358805	+	1	NA	NA	NA	337	NM_021547	59045	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	0.075000	0.626866	
mm_86251.1	chr9	121489905	121490105	-	1	NA	NA	NA	5689	NM_001284508	12424	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.045000	0.527363	
mm_43611.1	chr5	137989647	137989847	+	1	NA	NA	NA	8226	NM_013478	12007	Mm.30061	NM_013478	ENSMUSG00000037053	Azgp1	Zag	alpha-2-glycoprotein 1, zinc	protein-coding	0.005000	0.487562	
mm_63426.1	chr7	127475109	127475309	+	1	NA	NA	NA	3595	NM_145589	233895	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.020000	0.522388	
mm_47303.1	chr5	122371941	122372141	-	1	NA	NA	NA	-78	NM_026883	68948	Mm.474469	NM_026883	ENSMUSG00000029463	Fam216a	1500011H22Rik	family with sequence similarity 216, member A	protein-coding	0.095000	0.676617	
mm_89839.1	chr10	106879199	106879399	+	1	NA	NA	NA	244365	NM_001142804	380660	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding	0.015000	0.378109	
mm_169897.1	chr16	48601659	48601859	-	1	NA	NA	NA	170197	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.000000	0.447761	
mm_37209.1	chr4	117884413	117884613	-	1	NA	NA	NA	-1037	NM_001253381	53418	Mm.123843	NM_017377	ENSMUSG00000028541	B4galt2	Ggtb2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	protein-coding	0.005000	0.577114	
mm_153587.1	chr19	43511553	43511753	-	1	NA	NA	NA	12952	NM_010324	14718	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.020000	0.472637	
mm_116270.1	chr13	34652790	34652990	-	1	NA	NA	NA	-33	NR_105041	101056149	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	OTTMUSG00000027716	predicted gene 15908	ncRNA	0.080000	0.661692	
mm_23265.1	chr3	51483884	51484084	+	1	NA	NA	NA	18	NM_016858	19338	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.115000	0.716418	
mm_156078.1	chrX	109196683	109196883	+	1	NA	NA	NA	27	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.015000	0.427861	
mm_60522.1	chr7	44479915	44480115	+	1	NA	NA	NA	-4502	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.507463	
mm_142012.1	chr17	35200318	35200518	-	1	NA	NA	NA	1589	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.040000	0.567164	
mm_120951.1	chr14	76780739	76780939	+	1	NA	NA	NA	103271	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.025000	0.462687	
mm_79525.1	chr9	57645170	57645370	+	1	NA	NA	NA	383	NM_007783	12988	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.145000	0.756219	
mm_18175.1	chr2	45110103	45110303	-	1	NA	NA	NA	74	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.120000	0.696517	
mm_152527.1	chr19	11324063	11324263	-	1	NA	NA	NA	10532	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.000000	0.323383	
mm_44399.1	chr5	17835879	17836079	-	1	NA	NA	NA	-83	NM_007643	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.015000	0.432836	
mm_136273.1	chr16	91056408	91056608	-	1	NA	NA	NA	-12129	NM_026110	67367	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.015000	0.527363	
mm_23234.1	chr3	50606088	50606288	+	1	NA	NA	NA	-162575	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.427861	
mm_73537.1	chr8	108703657	108703857	+	1	NA	NA	NA	-10887	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.085000	0.577114	
mm_32582.1	chr4	110652523	110652723	+	1	NA	NA	NA	254925	NM_030231	78933	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	0.000000	0.373134	
mm_20223.1	chr2	125782621	125782821	-	1	NA	NA	NA	149	NM_177608	70354	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.145000	0.771144	
mm_103728.1	chr11	79623023	79623223	-	1	NA	NA	NA	40	NR_003283	790912	Mm.447313	NR_003283	ENSMUSG00000087434	Rab11fip4os1	Gm11202|OTTMUSG00000000185	RAB11 family interacting protein 4 (class II), opposite strand 1	ncRNA	0.015000	0.407960	-33(GCCTTTATAAAC,+,0.00),-33(GCCTTTATAAAC,-,0.00),-31(CTTTATAAACTC,+,0.00)
mm_106503.1	chr11	120437544	120437744	-	1	NA	NA	NA	56	NM_001195023	217365	Mm.309520	NM_199469	ENSMUSG00000039703	Nploc4	AK129375|Npl4|mKIAA1499	NPL4 homolog, ubiquitin recognition factor	protein-coding	0.135000	0.771144	
mm_42085.1	chr5	110180932	110181132	+	1	NA	NA	NA	4331	NM_008146	269682	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	0.030000	0.452736	
mm_15953.1	chr2	165983275	165983475	+	1	NA	NA	NA	-9262	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.020000	0.457711	
mm_121528.1	chr14	122181615	122181815	+	1	NA	NA	NA	21	NM_029556	69634	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	0.115000	0.726368	
mm_169471.1	chr14	68932663	68932863	+	1	NA	NA	NA	-96526	NM_009285	20855	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	0.005000	0.288557	
mm_78428.1	chr9	31281147	31281347	+	1	NA	NA	NA	9846	NM_001101597	638580	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.145000	0.761194	
mm_81906.1	chr9	119983882	119984082	+	1	NA	NA	NA	676	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.130000	0.731343	
mm_129727.1	chr15	82016088	82016288	-	1	NA	NA	NA	-48	NM_134095	28075	Mm.474453	NM_134095	ENSMUSG00000022472	Desi1	AI427858|AI850401|D15Wsu75e|DeSI-1|Fam152b|Pppde2	desumoylating isopeptidase 1	protein-coding	0.110000	0.691542	
mm_77707.1	chr8	126591622	126591822	-	1	NA	NA	NA	1714	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.025000	0.587065	
mm_16050.1	chr2	167754152	167754352	+	1	NA	NA	NA	63075	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.015000	0.532338	
mm_14756.1	chr2	144714752	144714952	+	1	NA	NA	NA	-108814	NM_025490	66328	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	0.010000	0.552239	-96(GTTTTTATAGGG,+,0.00)
mm_89919.1	chr10	111190285	111190485	+	1	NA	NA	NA	25583	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.000000	0.378109	
mm_99352.1	chr11	101583628	101583828	+	1	NA	NA	NA	1486	NM_144830	217203	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.000000	0.537313	
mm_5068.1	chr1	195034107	195034307	+	1	NA	NA	NA	-2833	NR_029809	723963		NR_029809	ENSMUSG00000065412	Mir29b-2	Mirn29b-2|mir-29b-2	microRNA 29b-2	ncRNA	0.005000	0.512438	
mm_74922.1	chr8	25589437	25589637	-	1	NA	NA	NA	7950	NM_173012	270035	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	0.015000	0.522388	
mm_22029.1	chr2	168050318	168050518	-	1	NA	NA	NA	-30586	NM_021409	58220	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0.105000	0.701493	
mm_68801.1	chr7	125491277	125491477	-	1	NA	NA	NA	165	NM_026330	67711	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.095000	0.636816	
mm_159843.1	chr5	135353171	135353371	+	1	NA	NA	NA	-24	NM_001346745	215061	Mm.261834	NM_178240	ENSMUSG00000053388	Trim50	-	tripartite motif-containing 50	protein-coding	0.025000	0.601990	
mm_17079.1	chr2	22895429	22895629	-	1	NA	NA	NA	7	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.100000	0.646766	
mm_120963.1	chr14	77904255	77904455	+	1	NA	NA	NA	116	NM_029495	108670	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.030000	0.522388	
mm_100457.1	chr11	119835490	119835690	+	1	NA	NA	NA	-1225	NR_045312	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	0.015000	0.502488	
mm_65665.1	chr7	28146752	28146952	-	1	NA	NA	NA	17386	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.552239	
mm_72349.1	chr8	79640082	79640282	+	1	NA	NA	NA	506	NM_001081164	73945	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.125000	0.721393	
mm_20258.1	chr2	126602204	126602404	-	1	NA	NA	NA	16374	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.025000	0.487562	
mm_17605.1	chr2	30897431	30897631	-	1	NA	NA	NA	5766	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.010000	0.587065	
mm_13190.1	chr2	93192313	93192513	+	1	NA	NA	NA	4829	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.035000	0.582090	
mm_24486.1	chr3	92170117	92170317	+	1	NA	NA	NA	-27463	NM_027042	69332	Mm.120271	NM_027042	ENSMUSG00000027927	Lelp1	1700012F11Rik	late cornified envelope-like proline-rich 1	protein-coding	0.010000	0.417910	
mm_7411.1	chr1	119422089	119422289	-	1	NA	NA	NA	59	NM_008381	16324	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	0.110000	0.621891	
mm_117655.1	chr13	93192097	93192297	-	1	NA	NA	NA	86	NM_133905	100715	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0.125000	0.776119	
mm_173211.1	chrX	73082358	73082558	-	1	NA	NA	NA	49	NM_001081642	434794	Mm.104764	NM_001081642	ENSMUSG00000079845	Xlr4a	-	X-linked lymphocyte-regulated 4A	protein-coding	0.040000	0.542289	
mm_3400.1	chr1	143739459	143739659	+	1	NA	NA	NA	-9	NM_001038592	69367	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	0.170000	0.781095	
mm_97998.1	chr11	84173198	84173398	+	1	NA	NA	NA	-5822	NM_001037932	628813	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690|OTTMUSG00000000997	predicted gene 11437	protein-coding	0.015000	0.487562	-33(TCTTATAAAGAG,+,0.00)
mm_29382.1	chr3	108840448	108840648	-	1	NA	NA	NA	-46	NM_011504	20912	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.110000	0.721393	
mm_61488.1	chr7	75703139	75703339	+	1	NA	NA	NA	-145099	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.010000	0.373134	
mm_96126.1	chr11	60777482	60777682	+	1	NA	NA	NA	57	NM_175491	237782	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	0.080000	0.577114	
mm_160346.1	chr8	19729468	19729668	+	1	NA	NA	NA	-8	NM_001270553	100861668	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.005000	0.447761	
mm_55018.1	chr6	48840927	48841127	-	1	NA	NA	NA	-39	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.010000	0.587065	
mm_9977.1	chr1	191224882	191225082	-	1	NA	NA	NA	-41649	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.030000	0.572139	
mm_114475.1	chr13	68582142	68582342	+	1	NA	NA	NA	32	NR_138478	69577	Mm.23670	NM_027123	ENSMUSG00000021532	Fastkd3	2310010B21Rik|AW048587	FAST kinase domains 3	protein-coding	0.110000	0.676617	
mm_6541.1	chr1	75124843	75125043	-	1	NA	NA	NA	8947	NM_194333	22626	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.080000	0.611940	
mm_100565.1	chr11	120730649	120730849	+	1	NA	NA	NA	1272	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.025000	0.557214	
mm_143819.1	chr17	83846664	83846864	-	1	NA	NA	NA	26	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.050000	0.562189	
mm_80742.1	chr9	94743437	94743637	+	1	NA	NA	NA	-8292	NR_106116	102465763		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.000000	0.502488	
mm_31456.1	chr4	48663414	48663614	+	1	NA	NA	NA	0	NM_026509	68016	Mm.133444	NM_026509	ENSMUSG00000028348	Murc	2310039E09Rik	muscle-related coiled-coil protein	protein-coding	0.040000	0.527363	7(ACCCTTTAAAGC,-,0.00),8(CCCTTTAAAGCA,+,0.00),9(CCTTTAAAGCAG,+,0.00)
mm_124967.1	chr15	18818578	18818778	+	1	NA	NA	NA	-269	NM_001316758	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0.045000	0.592040	
mm_33539.1	chr4	130934382	130934582	+	1	NA	NA	NA	-9903	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.010000	0.597015	
mm_6573.1	chr1	75209353	75209553	-	1	NA	NA	NA	1325	NM_029010	74577	Mm.458319	NM_029010	ENSMUSG00000026200	Glb1l	4833408P15Rik	galactosidase, beta 1-like	protein-coding	0.040000	0.567164	
mm_40953.1	chr5	76856662	76856862	+	1	NA	NA	NA	16163	NM_001163793	320827	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.065000	0.671642	
mm_27549.1	chr3	57847989	57848189	-	1	NA	NA	NA	-332	NM_019410	18645	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	0.075000	0.666667	
mm_115448.1	chr13	118556068	118556268	+	1	NA	NA	NA	0	NR_045982	75890	Mm.141235	NR_045982	ENSMUSG00000100727	1700003P14Rik	1700030O10Rik|4930584L06Rik	RIKEN cDNA 1700003P14 gene	ncRNA	0.005000	0.358209	
mm_105063.1	chr11	100718478	100718678	-	1	NA	NA	NA	4728	NM_029307	75482	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.025000	0.507463	
mm_120864.1	chr14	75229474	75229674	+	1	NA	NA	NA	-12713	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.010000	0.363184	
mm_50365.1	chr6	48659361	48659561	+	1	NA	NA	NA	12100	NM_212486	243374	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	0.005000	0.457711	
mm_77839.1	chr9	5299095	5299295	+	1	NA	NA	NA	678	NM_009807	12362	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.010000	0.402985	
mm_106005.1	chr11	115708476	115708676	-	1	NA	NA	NA	21	NM_008163	14784	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.165000	0.781095	
mm_49245.1	chr6	17307602	17307802	+	1	NA	NA	NA	62	NM_001243064	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.065000	0.616915	
mm_18944.1	chr2	76766284	76766484	-	1	NA	NA	NA	91069	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.040000	0.437811	
mm_151767.1	chr19	5272922	5273122	-	1	NA	NA	NA	97	NM_153129	107975	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	0.170000	0.751244	
mm_1780.1	chr1	78511781	78511981	+	1	NA	NA	NA	821	NM_026713	68393	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	0.065000	0.626866	
mm_88074.1	chr10	67979472	67979672	+	1	NA	NA	NA	-26	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.080000	0.641791	49(CTGTTTTAAAGA,-,0.00)
mm_13356.1	chr2	103411987	103412187	+	1	NA	NA	NA	-11	NM_001145813	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.005000	0.572139	
mm_44128.1	chr5	149678115	149678315	+	1	NA	NA	NA	-42	NM_001081204	381694	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	0.140000	0.761194	
mm_94539.1	chr11	9131528	9131728	+	1	NA	NA	NA	13121	NM_001159402	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.015000	0.517413	
mm_84995.1	chr9	86695746	86695946	-	1	NA	NA	NA	68	NM_008615	17436	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding	0.190000	0.830846	
mm_112884.1	chr13	20859158	20859358	+	1	NA	NA	NA	65145	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.447761	
mm_42232.1	chr5	113550785	113550985	+	1	NA	NA	NA	465	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.040000	0.577114	
mm_25536.1	chr3	115673973	115674173	+	1	NA	NA	NA	40982	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.030000	0.442786	
mm_57927.1	chr6	134558635	134558835	-	1	NA	NA	NA	8178	NM_008514	16974	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	0.005000	0.407960	83(GTTTTTAAACCC,+,0.00)
mm_148620.1	chr19	5414800	5415000	+	1	NA	NA	NA	8085	NR_027938	74931	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	0.000000	0.318408	
mm_129031.1	chr15	74959109	74959309	-	1	NA	NA	NA	4103	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.010000	0.567164	
mm_46169.1	chr5	96739117	96739317	-	1	NA	NA	NA	-54168	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.025000	0.467662	
mm_119657.1	chr14	52136392	52136592	+	1	NA	NA	NA	25589	NM_023879	77945	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	0.015000	0.427861	
mm_51457.1	chr6	82041613	82041813	+	1	NA	NA	NA	85	NM_145570	232146	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	0.060000	0.671642	
mm_169436.1	chr14	55885013	55885213	+	1	NA	NA	NA	171	NR_138134	219094	Mm.37592	NM_027143	ENSMUSG00000047153	Khnyn	6330555F21|9130227C08Rik|AI605259|Kiaa0323|mKIAA0323	KH and NYN domain containing	protein-coding	0.110000	0.751244	
mm_54807.1	chr6	42040048	42040248	-	1	NA	NA	NA	1754	NM_009299	20939	Mm.4119	NM_009299	ENSMUSG00000023289	Sva	-	seminal vesicle antigen	protein-coding	0.020000	0.353234	
mm_133065.1	chr16	58662003	58662203	+	1	NA	NA	NA	-8105	NM_007757	12892	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0.020000	0.512438	
mm_130956.1	chr15	103310308	103310508	-	1	NA	NA	NA	30	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.000000	0.477612	-2(CCCTAGAAAAGC,-,0.00)
mm_44213.1	chr5	4115004	4115204	-	1	NA	NA	NA	-10407	NM_020010	13121	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	0.000000	0.368159	
mm_152844.1	chr19	23448318	23448518	-	1	NA	NA	NA	-96	NM_174857	71738	Mm.50841	NM_174857	ENSMUSG00000033207	Mamdc2	1200015L10Rik|AI591564|mamcan	MAM domain containing 2	protein-coding	0.015000	0.542289	46(GCTTTAAAATTC,+,0.00)
mm_18380.1	chr2	60037273	60037473	-	1	NA	NA	NA	88367	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.005000	0.398010	
mm_128825.1	chr15	67131465	67131665	-	1	NA	NA	NA	45317	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.020000	0.447761	
mm_33771.1	chr4	134470659	134470859	+	1	NA	NA	NA	2439	NM_019641	16765	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	0.030000	0.497512	
mm_129634.1	chr15	80235285	80235485	-	1	NA	NA	NA	1305	NM_178719	239555	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.005000	0.393035	-33(TCCTAAAAAGCC,+,0.00),53(CACCATATAAGC,-,0.00)
mm_29151.1	chr3	105959166	105959366	-	1	NA	NA	NA	-232	NM_027432	70465	Mm.5110	NM_027432	ENSMUSG00000000561	Wdr77	2610003I18Rik|2610312E17Rik|C79984|p44/MEP50	WD repeat domain 77	protein-coding	0.085000	0.606965	
mm_138086.1	chr17	33996965	33997165	+	1	NA	NA	NA	3268	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.010000	0.512438	
mm_34991.1	chr4	156028851	156029051	+	1	NA	NA	NA	2609	NM_021985	21936	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	0.005000	0.452736	
mm_127488.1	chr15	101293373	101293573	+	1	NA	NA	NA	261	NR_033803	77717	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.035000	0.611940	
mm_144867.1	chr18	36727525	36727725	+	1	NA	NA	NA	-810	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.035000	0.417910	
mm_159723.1	chr5	35389220	35389420	+	1	NA	NA	NA	203	NM_010445	15371	Mm.358606	NM_010445	ENSMUSG00000067438	Hmx1	Nkx5-3	H6 homeobox 1	protein-coding	0.160000	0.776119	
mm_22660.1	chr3	14871613	14871813	+	1	NA	NA	NA	8175	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.015000	0.572139	
mm_49379.1	chr6	24597716	24597916	+	1	NA	NA	NA	45	NM_053098	93677	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	0.040000	0.577114	-80(CGCTCTTAAAAG,-,0.00),-79(GCTCTTAAAAGG,-,0.00)
mm_125846.1	chr15	74958852	74959052	+	1	NA	NA	NA	3846	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.015000	0.492537	
mm_172742.1	chr8	79700880	79701080	-	1	NA	NA	NA	10760	NM_015751	24015	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	0.010000	0.348259	
mm_54290.1	chr6	29272399	29272599	-	1	NA	NA	NA	11	NM_001190461	69573	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.080000	0.636816	
mm_509.1	chr1	37246613	37246813	+	1	NA	NA	NA	27508	NM_009918	12790	Mm.214224	NM_009918	ENSMUSG00000026114	Cnga3	CNG3	cyclic nucleotide gated channel alpha 3	protein-coding	0.005000	0.532338	
mm_140607.1	chr17	10631044	10631244	-	1	NA	NA	NA	174928	NR_077238	319750	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.020000	0.447761	
mm_142942.1	chr17	56040122	56040322	-	1	NA	NA	NA	-194	NM_013733	27221	Mm.391010	NM_013733	ENSMUSG00000002835	Chaf1a	AL023013|AL024058|CAF-1|Cac1p	chromatin assembly factor 1, subunit A (p150)	protein-coding	0.060000	0.522388	
mm_143480.1	chr17	71262931	71263131	-	1	NA	NA	NA	47934	NM_145158	246707	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.000000	0.427861	
mm_47651.1	chr5	125391600	125391800	-	1	NA	NA	NA	-1683	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.020000	0.452736	
mm_140200.1	chr17	83706085	83706285	+	1	NA	NA	NA	22	NM_001171052	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.165000	0.825871	
mm_37767.1	chr4	129742085	129742285	-	1	NA	NA	NA	118	NM_011317	20218	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	0.140000	0.721393	
mm_72476.1	chr8	83608153	83608353	+	1	NA	NA	NA	78	NM_018808	81489	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.120000	0.696517	12(GGGTATATAGAG,-,0.00)
mm_46636.1	chr5	108519943	108520143	-	1	NA	NA	NA	29984	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.030000	0.597015	
mm_96853.1	chr11	70054247	70054447	+	1	NA	NA	NA	-8	NM_009714	11889	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.015000	0.572139	
mm_168329.1	chr11	116394444	116394644	+	1	NA	NA	NA	18488	NM_027258	217340	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.030000	0.462687	-31(CTCTTTAAAGAG,+,0.00),-31(CTCTTTAAAGAG,-,0.00)
mm_43682.1	chr5	138807156	138807356	+	1	NA	NA	NA	-12824	NM_001195128	384244	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0.025000	0.542289	
mm_20048.1	chr2	120244963	120245163	-	1	NA	NA	NA	272	NM_177845	329502	Mm.330505	NM_177845	ENSMUSG00000050211	Pla2g4e	2310026J01Rik|C230096D22|Pla2epsilon	phospholipase A2, group IVE	protein-coding	0.065000	0.557214	
mm_116026.1	chr13	25020218	25020418	-	1	NA	NA	NA	-1	NM_001013389	380836	Mm.387097	NM_001013389	ENSMUSG00000021339	Mrs2	Gm902|HPT|Mrs2l|RPT	MRS2 magnesium transporter	protein-coding	0.160000	0.751244	
mm_96561.1	chr11	69016004	69016204	+	1	NA	NA	NA	193	NM_001013256	68964	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	0.055000	0.587065	
mm_148189.1	chr18	78963236	78963436	-	1	NA	NA	NA	146055	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.005000	0.343284	
mm_106865.1	chr12	8009343	8009543	+	1	NA	NA	NA	31766	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.348259	-96(GTCTTTATAGTC,+,0.00)
mm_67850.1	chr7	98665248	98665448	-	1	NA	NA	NA	-8779	NM_172280	233545	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0.010000	0.393035	
mm_50885.1	chr6	56369610	56369810	+	1	NA	NA	NA	-76	NM_001159955	18575	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0.045000	0.522388	
mm_6737.1	chr1	83038317	83038517	-	1	NA	NA	NA	31	NM_030556	80721	Mm.261542	NM_030556	ENSMUSG00000038496	Slc19a3	A230084E24Rik|AI788884|ThTr2	solute carrier family 19, member 3	protein-coding	0.050000	0.527363	
mm_2073.1	chr1	87637410	87637610	+	1	NA	NA	NA	17198	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.000000	0.522388	
mm_101221.1	chr11	20153676	20153876	-	1	NA	NA	NA	-40825	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.010000	0.532338	-35(CCCCTTTAAAAG,-,0.00),-34(CCCTTTAAAAGT,-,0.00),-33(CCTTTAAAAGTG,+,0.00)
mm_123904.1	chr14	73239682	73239882	-	1	NA	NA	NA	1891	NM_175116	67168	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.015000	0.298507	-87(GCTTTTAGACCT,+,0.00)
mm_141212.1	chr17	27133788	27133988	-	1	NA	NA	NA	3	NM_026063	67267	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	0.090000	0.661692	
mm_101719.1	chr11	42182220	42182420	-	1	NA	NA	NA	610	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding	0.095000	0.582090	
mm_99413.1	chr11	102276719	102276919	+	1	NA	NA	NA	7996	NM_148953	217217	Mm.216432	NM_148953	ENSMUSG00000034768	Asb16	-	ankyrin repeat and SOCS box-containing 16	protein-coding	0.045000	0.671642	
mm_48596.1	chr5	144014788	144014988	-	1	NA	NA	NA	-35	NM_177682	231874	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0.100000	0.696517	
mm_36837.1	chr4	106492223	106492423	-	1	NA	NA	NA	-80	NM_080458	140475	Mm.135448	NM_080458	ENSMUSG00000025418	Bsnd	-	Bartter syndrome, infantile, with sensorineural deafness (Barttin)	protein-coding	0.010000	0.592040	
mm_140667.1	chr17	12915923	12916123	-	1	NA	NA	NA	68	NM_026310	67681	Mm.290166	NM_026310	ENSMUSG00000057388	Mrpl18	1010001C05Rik|C79879|HSPC071|MRP-L18	mitochondrial ribosomal protein L18	protein-coding	0.055000	0.567164	
mm_69336.1	chr7	129420842	129421042	-	1	NA	NA	NA	163848	NM_001080963	381925	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0.000000	0.457711	
mm_119424.1	chr14	45351093	45351293	+	1	NA	NA	NA	7	NM_019637	56291	Mm.202561	NM_019637	ENSMUSG00000053205	Styx	0610039A20Rik|hStyxb	serine/threonine/tyrosine interaction protein	protein-coding	0.135000	0.781095	
mm_85822.1	chr9	110420768	110420968	-	1	NA	NA	NA	1060	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.005000	0.492537	
mm_115603.1	chr13	11905332	11905532	-	1	NA	NA	NA	201513	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.005000	0.338308	
mm_52406.1	chr6	113380630	113380830	+	1	NA	NA	NA	2617	NM_001170485	68089	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	0.030000	0.592040	
mm_18866.1	chr2	75712930	75713130	-	1	NA	NA	NA	-8367	NM_010902	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.005000	0.383085	
mm_111682.1	chr12	103391455	103391655	-	1	NA	NA	NA	2873	NM_001177841	68149	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	0.025000	0.527363	
mm_91041.1	chr10	18545753	18545953	-	1	NA	NA	NA	223	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	0.085000	0.681592	
mm_36849.1	chr4	106737921	106738121	-	1	NA	NA	NA	4106	NM_146149	230579	Mm.222956	NM_146149	ENSMUSG00000034871	Fam151a	2010309H15Rik	family with sequence simliarity 151, member A	protein-coding	0.005000	0.487562	
mm_149402.1	chr19	11392571	11392771	+	1	NA	NA	NA	-14990	NM_029499	64380	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	0.000000	0.398010	
mm_141453.1	chr17	30395958	30396158	-	1	NA	NA	NA	122	NR_030688	623169	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0.055000	0.502488	-17(GTTTTAAAAGAC,+,0.00)
mm_73017.1	chr8	93968845	93969045	+	1	NA	NA	NA	43695	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.005000	0.417910	
mm_49380.1	chr6	24603232	24603432	+	1	NA	NA	NA	5561	NM_053098	93677	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	0.015000	0.437811	
mm_133229.1	chr16	76814422	76814622	+	1	NA	NA	NA	196359	NR_040573	76601	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	0.035000	0.472637	
mm_1585.1	chr1	74295568	74295768	+	1	NA	NA	NA	8668	NM_027154	69660	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.015000	0.567164	40(CGCCTTTAAGGG,-,0.00),41(GCCTTTAAGGGA,+,0.00),42(CCTTTAAGGGAA,+,0.00)
mm_130089.1	chr15	89379182	89379382	-	1	NA	NA	NA	-28	NM_001013022	70113	Mm.247273	NM_001013022	ENSMUSG00000047394	Odf3b	2010001J22Rik	outer dense fiber of sperm tails 3B	protein-coding	0.045000	0.597015	
mm_154849.1	chrX	20483367	20483567	+	1	NA	NA	NA	57779	NM_001289684	382207	Mm.281517	NM_199317	ENSMUSG00000037315	Jade3	5730598B06|AI851988|AW544806|Phf16|mKIAA0215	jade family PHD finger 3	protein-coding	0.010000	0.323383	
mm_40239.1	chr5	37735436	37735636	+	1	NA	NA	NA	17	NM_001081106	231162	Mm.76407	NM_001081106	ENSMUSG00000062329	Cytl1	4930443F05Rik|4Cytl1|C17|Cyt1|Gm147	cytokine-like 1	protein-coding	0.015000	0.616915	-32(CTATTTAAAAGG,-,0.00)
mm_166803.1	chr7	4170839	4171039	+	1	NA	NA	NA	-6240	NM_021454	58804	Mm.34268	NM_021454	ENSMUSG00000063838	Cdc42ep5	1700027J19Rik|2010007O02Rik|Borg3|C85526|CEP5	CDC42 effector protein (Rho GTPase binding) 5	protein-coding	0.010000	0.437811	
mm_129089.1	chr15	75909455	75909655	-	1	NA	NA	NA	1	NM_001285431	66656	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0.115000	0.646766	
mm_85106.1	chr9	95402140	95402340	-	1	NA	NA	NA	5030	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.000000	0.412935	
mm_170048.1	chr17	25514257	25514457	-	1	NA	NA	NA	-17069	NM_001191008	20609	Mm.353282	NM_011425	ENSMUSG00000050824	Sstr5	Smstr5|sst5	somatostatin receptor 5	protein-coding	0.000000	0.477612	
mm_93361.1	chr10	103144874	103145074	-	1	NA	NA	NA	91348	NM_001163559	74978	Mm.483817	NM_029134	ENSMUSG00000019892	Lrriq1	4930503E15Rik|Gm1557	leucine-rich repeats and IQ motif containing 1	protein-coding	0.010000	0.303483	-32(GCTTAAATAGAT,+,0.00)
mm_83744.1	chr9	51103888	51104088	-	1	NA	NA	NA	-343	NR_029655	723849		NR_029655	ENSMUSG00000065492	Mir34b	Mirn34b|mir-34b|mmu-mir-34b	microRNA 34b	ncRNA	0.080000	0.681592	
mm_24653.1	chr3	94399203	94399403	+	1	NA	NA	NA	84	NM_177250	320747	Mm.213001	NM_177250	ENSMUSG00000044505	Lingo4	A530050P17Rik|LERN4|Lrrn6d	leucine rich repeat and Ig domain containing 4	protein-coding	0.045000	0.547264	-97(TGGTTTAAAAAG,-,0.00),-95(GTTTAAAAAGAG,+,0.00)
mm_17688.1	chr2	32323378	32323578	-	1	NA	NA	NA	5018	NR_029811	387239		NR_029811	ENSMUSG00000092807	Mir199b	Mirn199b|mir-199b	microRNA 199b	ncRNA	0.010000	0.542289	
mm_43142.1	chr5	125441543	125441743	+	1	NA	NA	NA	75	NM_029752	76809	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	0.135000	0.786070	
mm_44615.1	chr5	25498693	25498893	-	1	NA	NA	NA	-10	NM_001081383	231051	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0.160000	0.820896	
mm_89884.1	chr10	108434085	108434285	+	1	NA	NA	NA	101996	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.040000	0.497512	
mm_69136.1	chr7	127042304	127042504	-	1	NA	NA	NA	16	NM_145588	110033	Mm.286488	NM_145588	ENSMUSG00000030677	Kif22	AU021460|C81217|Kid|Kif22a	kinesin family member 22	protein-coding	0.100000	0.621891	
mm_63276.1	chr7	126763041	126763241	+	1	NA	NA	NA	-3273	NM_024228	68616	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	0.015000	0.512438	-66(CTGCTTAAAAGC,-,0.00)
mm_129584.1	chr15	79742402	79742602	-	1	NA	NA	NA	34	NM_194342	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.150000	0.746269	
mm_120926.1	chr14	76476822	76477022	+	1	NA	NA	NA	-11514	NM_001177751	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.020000	0.502488	
mm_65034.1	chr7	18556719	18556919	-	1	NA	NA	NA	10486	NM_001037168	545925	Mm.440302	NM_001037168	ENSMUSG00000070797	Psg27	EG545925|cea15	pregnancy-specific glycoprotein 27	protein-coding	0.010000	0.522388	
mm_42381.1	chr5	114932865	114933065	+	1	NA	NA	NA	-9237	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.020000	0.562189	
mm_92809.1	chr10	81385147	81385347	-	1	NA	NA	NA	819	NM_133964	102115	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	0.030000	0.507463	-34(CAGTATAAGAGG,-,0.00)
mm_96272.1	chr11	62842658	62842858	+	1	NA	NA	NA	-4365	NM_001033669	213980	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	0.010000	0.343284	
mm_173303.1	chrY	68824237	68824437	-	1	NA	NA	NA	-1484290	NM_001160135	100039574	Mm.458579	NM_001160135	ENSMUSG00000094739	Gm20806	-	predicted gene, 20806	protein-coding	0.005000	0.398010	
mm_45996.1	chr5	90639555	90639755	-	1	NA	NA	NA	872	NM_028478	73246	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.030000	0.537313	
mm_128693.1	chr15	62039066	62039266	-	1	NA	NA	NA	-91	NR_132746	19296	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	plasmacytoma variant translocation 1	ncRNA	0.000000	0.502488	
mm_101716.1	chr11	42181999	42182199	-	1	NA	NA	NA	831	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding	0.035000	0.567164	
mm_61495.1	chr7	75752499	75752699	+	1	NA	NA	NA	-95739	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.025000	0.616915	
mm_12253.1	chr2	68905777	68905977	+	1	NA	NA	NA	44436	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.000000	0.383085	
mm_19371.1	chr2	91183770	91183970	-	1	NA	NA	NA	-823	NM_145527	228355	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0.030000	0.557214	
mm_71141.1	chr8	39045978	39046178	+	1	NA	NA	NA	40211	NM_030254	80286	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	0.005000	0.452736	29(GGCTTTTTAAAA,-,0.00)
mm_121263.1	chr14	103073252	103073452	+	1	NA	NA	NA	3136	NM_001033242	211286	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0.030000	0.497512	
mm_7048.1	chr1	87127026	87127226	-	1	NA	NA	NA	2118	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.035000	0.512438	
mm_56853.1	chr6	118139026	118139226	-	1	NA	NA	NA	14	NM_030165	78752	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0.140000	0.781095	
mm_150447.1	chr19	38054967	38055167	+	1	NA	NA	NA	25	NM_001164362	74107	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	0.095000	0.681592	
mm_13929.1	chr2	120977067	120977267	+	1	NA	NA	NA	105	NM_175285	96957	Mm.315212	NM_175285	ENSMUSG00000054484	Tmem62	B830009D23Rik|C77355	transmembrane protein 62	protein-coding	0.080000	0.701493	
mm_11088.1	chr2	27886290	27886490	+	1	NA	NA	NA	-35	NM_015734	12831	Mm.7281	NM_015734	ENSMUSG00000026837	Col5a1	AI413331	collagen, type V, alpha 1	protein-coding	0.090000	0.716418	
mm_150589.1	chr19	40665119	40665319	+	1	NA	NA	NA	5449	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.010000	0.417910	28(CTCCTTAAAAAC,-,0.00)
mm_89969.1	chr10	111485253	111485453	+	1	NA	NA	NA	4736	NM_001146707	53605	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.005000	0.373134	
mm_24175.1	chr3	88575739	88575939	+	1	NA	NA	NA	-3832	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.005000	0.517413	
mm_13116.1	chr2	91650103	91650303	+	1	NA	NA	NA	85	NR_027371	228359	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	0.075000	0.646766	
mm_110210.1	chr12	28552299	28552499	-	1	NA	NA	NA	-4062	NM_001177964	68511	Mm.310284	NM_001177964	ENSMUSG00000020633	Dcdc2c	1110015M06Rik	doublecortin domain containing 2C	protein-coding	0.065000	0.681592	
mm_72629.1	chr8	84660313	84660513	+	1	NA	NA	NA	2439	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.040000	0.582090	
mm_137204.1	chr17	23942272	23942472	+	1	NA	NA	NA	376	NM_011321	20234	Mm.390958	NM_011321	ENSMUSG00000024128	Sbp	AV082137|AV082259|p25	spermine binding protein	protein-coding	0.005000	0.477612	
mm_154565.1	chrX	6415628	6415828	+	1	NA	NA	NA	-14	NM_001313764	208431	Mm.23208	NM_001040459	ENSMUSG00000068270	Shroom4	D430043L16Rik|Gm724|Shrm4	shroom family member 4	protein-coding	0.030000	0.502488	-20(GTGTTTAAAGAG,-,0.00),-18(GTTTAAAGAGCC,+,0.00)
mm_38803.1	chr4	148159714	148159914	-	1	NA	NA	NA	-225	NM_001161851	230903	Mm.220327	NM_173401	ENSMUSG00000029001	Fbxo44	5730411K09|AV001623|FBG3|FBX30|Fbx6a|Fbxo6a	F-box protein 44	protein-coding	0.080000	0.671642	
mm_34344.1	chr4	144519725	144519925	+	1	NA	NA	NA	3	NM_198662	381572	Mm.184290	NM_198662	ENSMUSG00000028593	9430007A20Rik	Aadacl4|Gm1034	RIKEN cDNA 9430007A20 gene	protein-coding	0.020000	0.482587	
mm_143644.1	chr17	79354895	79355095	-	1	NA	NA	NA	96	NM_026514	260409	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	0.140000	0.726368	
mm_27002.1	chr3	25840780	25840980	-	1	NA	NA	NA	312427	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.328358	
mm_83970.1	chr9	57158213	57158413	-	1	NA	NA	NA	-14	NM_025417	66199	Mm.41687	NM_025417	ENSMUSG00000032299	Commd4	1110039H05Rik	COMM domain containing 4	protein-coding	0.030000	0.512438	
mm_105019.1	chr11	100440984	100441184	-	1	NA	NA	NA	5	NM_026561	68106	Mm.28738	NM_026561	ENSMUSG00000017176	Nt5c3b	2610037D24Rik|AI841843|C330027I04Rik|Nt5c3l	5'-nucleotidase, cytosolic IIIB	protein-coding	0.125000	0.721393	
mm_35390.1	chr4	33290051	33290251	-	1	NA	NA	NA	-20160	NM_011884	24018	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.010000	0.462687	
mm_126673.1	chr15	84538851	84539051	+	1	NA	NA	NA	18872	NM_177630	223732	Mm.6471	NM_177630	ENSMUSG00000055745	Ldoc1l	BC058638|Mar6|Mart6	leucine zipper, down-regulated in cancer 1-like	protein-coding	0.020000	0.487562	
mm_131959.1	chr16	24488377	24488577	+	1	NA	NA	NA	40386	NM_001145952	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.005000	0.398010	
mm_23433.1	chr3	59103472	59103672	+	1	NA	NA	NA	-1751	NM_173398	229323	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	0.010000	0.402985	
mm_16259.1	chr2	173276597	173276797	+	1	NA	NA	NA	-164	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.145000	0.756219	-30(GGCTCTTAAAGG,-,0.00),-29(GCTCTTAAAGGG,+,0.00),-29(GCTCTTAAAGGG,-,0.00),-28(CTCTTAAAGGGC,+,0.00),-27(TCTTAAAGGGCC,+,0.00)
mm_9431.1	chr1	172501516	172501716	-	1	NA	NA	NA	1370	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.005000	0.452736	-2(GCTTAAAAAGCC,+,0.00)
mm_2456.1	chr1	104768418	104768618	+	1	NA	NA	NA	-301	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding	0.070000	0.552239	50(TGGTCTTAAAGG,-,0.00)
mm_16515.1	chr2	181377464	181377664	+	1	NA	NA	NA	-3671	NM_023684	72699	Mm.440138	NM_023684	ENSMUSG00000090077	Lime1	2810038K19Rik|LIME	Lck interacting transmembrane adaptor 1	protein-coding	0.000000	0.373134	
mm_73346.1	chr8	105373171	105373371	+	1	NA	NA	NA	-2110	NM_001081333	102075	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0.000000	0.582090	
mm_77147.1	chr8	111599818	111600018	-	1	NA	NA	NA	30404	NM_027570	52815	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	0.005000	0.437811	
mm_157971.1	chrX	93796192	93796392	-	1	NA	NA	NA	35803	NM_145630	236900	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	0.005000	0.467662	
mm_37346.1	chr4	119962438	119962638	-	1	NA	NA	NA	147860	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.010000	0.487562	
mm_98786.1	chr11	96926084	96926284	+	1	NA	NA	NA	-3140	NM_146026	217138	Mm.342551	NM_146026	ENSMUSG00000047040	Prr15l	Atad4|BC022765|E230006A12Rik	proline rich 15-like	protein-coding	0.025000	0.512438	
mm_104259.1	chr11	88924538	88924738	-	1	NA	NA	NA	18710	NR_045955	73921	Mm.439148	NR_045955	ENSMUSG00000087338	Scpep1os	4930405P13Rik	serine carboxypeptidase 1, opposite strand	ncRNA	0.005000	0.577114	
mm_79900.1	chr9	65371580	65371780	+	1	NA	NA	NA	10620	NM_001111145	208080	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	0.005000	0.542289	
mm_69369.1	chr7	130646790	130646990	-	1	NA	NA	NA	-45666	NM_001347637	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.060000	0.567164	
mm_75232.1	chr8	39629151	39629351	-	1	NA	NA	NA	13427	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.010000	0.398010	
mm_105855.1	chr11	113751173	113751373	-	1	NA	NA	NA	-113	NM_020006	56699	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.100000	0.641791	
mm_83413.1	chr9	44865304	44865504	-	1	NA	NA	NA	15870	NM_001081049	214162	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	0.020000	0.567164	
mm_109441.1	chr12	110737993	110738193	+	1	NA	NA	NA	161	NM_001347428	69641	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0.065000	0.592040	
mm_109886.1	chr12	5367820	5368020	-	1	NA	NA	NA	7762	NM_001164493	208439	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.005000	0.333333	
mm_2345.1	chr1	92894800	92895000	+	1	NA	NA	NA	8006	NM_172850	241158	Mm.108280	NM_172850	ENSMUSG00000034212	Ankmy1	4930483I10Rik|ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding	0.010000	0.537313	
mm_163046.1	chr11	55678111	55678311	+	1	NA	NA	NA	-70013	NM_020492	14654	Mm.89320	NM_020492	ENSMUSG00000000263	Glra1	nmf11|oscillator|ot|spasmodic|spd	glycine receptor, alpha 1 subunit	protein-coding	0.000000	0.437811	
mm_32321.1	chr4	103619486	103619686	+	1	NA	NA	NA	237086	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA	0.060000	0.651741	
mm_68349.1	chr7	106509119	106509319	-	1	NA	NA	NA	-68146	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.383085	
mm_168342.1	chr11	120598078	120598278	-	1	NA	NA	NA	187	NM_011568	21681	Mm.1886	NM_011568	ENSMUSG00000025134	Alyref	ALY|REF1|Refbp1|Thoc4	Aly/REF export factor	protein-coding	0.180000	0.825871	
mm_71272.1	chr8	40919423	40919623	+	1	NA	NA	NA	-6710	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.015000	0.452736	
mm_3835.1	chr1	159992473	159992673	+	1	NA	NA	NA	-51807	NR_028111	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.000000	0.402985	-34(GGTTTTTAAAAG,-,0.00),-33(GTTTTTAAAAGA,-,0.00)
mm_146191.1	chr18	76111749	76111949	+	1	NA	NA	NA	-13378	NR_045365	73009	Mm.443541	NR_045365		2900057B20Rik	-	RIKEN cDNA 2900057B20 gene	ncRNA	0.005000	0.547264	
mm_22084.1	chr2	168766941	168767141	-	1	NA	NA	NA	160	NM_201395	99377	Mm.434054	NM_175303	ENSMUSG00000027547	Sall4	5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20	sal-like 4 (Drosophila)	protein-coding	0.075000	0.656716	
mm_166631.1	chr6	78467432	78467632	-	1	NA	NA	NA	1342	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.010000	0.507463	
mm_39814.1	chr5	30711482	30711682	+	1	NA	NA	NA	-313	NM_023047	65254	Mm.27732	NM_023047	ENSMUSG00000029168	Dpysl5	CRAM|CRMP-5|Crmp5	dihydropyrimidinase-like 5	protein-coding	0.055000	0.621891	
mm_148425.1	chr19	3941453	3941653	+	1	NA	NA	NA	6367	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.010000	0.527363	
mm_114595.1	chr13	75763950	75764150	+	1	NA	NA	NA	56566	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.000000	0.383085	77(TTGTTTAAATGG,-,0.00)
mm_89775.1	chr10	100589021	100589221	+	1	NA	NA	NA	138	NM_175128	68281	Mm.268474	NM_175128	ENSMUSG00000046567	4930430F08Rik	4930571E09Rik|A730088G13Rik|AW551239|C430008C19Rik	RIKEN cDNA 4930430F08 gene	protein-coding	0.055000	0.597015	
mm_151268.1	chr19	54513432	54513632	+	1	NA	NA	NA	468350	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	0.005000	0.442786	-42(GCTTTTAGGGAT,+,0.00)
mm_14818.1	chr2	146838895	146839095	+	1	NA	NA	NA	-16894	NM_001033298	228730	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	0.030000	0.542289	-91(CCTTTTAAAATG,+,0.00)
mm_73252.1	chr8	104322284	104322484	+	1	NA	NA	NA	157	NM_028524	75502	Mm.232593	NM_028524	ENSMUSG00000035785	Cmtm2b	1700013O04Rik|Cklfsf22|Cklfsf2b	CKLF-like MARVEL transmembrane domain containing 2B	protein-coding	0.050000	0.567164	
mm_33858.1	chr4	135895345	135895545	+	1	NA	NA	NA	256	NM_009924	12802	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0.025000	0.572139	
mm_73411.1	chr8	106052635	106052835	+	1	NA	NA	NA	-6868	NM_010901	18021	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.015000	0.542289	
mm_70567.1	chr8	13140039	13140239	+	1	NA	NA	NA	4067	NR_106032	102465645		NR_106032	ENSMUSG00000098532	Mir7065	Gm27871|mmu-mir-7065	microRNA 7065	ncRNA	0.005000	0.457711	
mm_85807.1	chr9	110307621	110307821	-	1	NA	NA	NA	2529	NM_001081381	72341	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	0.020000	0.587065	
mm_143599.1	chr17	75551712	75551912	-	1	NA	NA	NA	134	NM_133747	72722	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0.075000	0.577114	
mm_122012.1	chr14	27271326	27271526	-	1	NA	NA	NA	33416	NM_027871	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.005000	0.507463	-36(CCTTATAAAAGG,+,0.00),-36(CCTTATAAAAGG,-,0.00)
mm_162508.1	chr1	150748517	150748717	+	1	NA	NA	NA	244818	NM_001024720	545370	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.015000	0.497512	
mm_4103.1	chr1	167598214	167598414	+	1	NA	NA	NA	-48	NM_009107	20183	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0.055000	0.601990	
mm_46644.1	chr5	108550092	108550292	-	1	NA	NA	NA	-165	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.050000	0.611940	
mm_50636.1	chr6	51329759	51329959	+	1	NA	NA	NA	-49851	NR_110455	625167	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	0.015000	0.522388	
mm_30880.1	chr4	32239360	32239560	+	1	NA	NA	NA	-177975	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.095000	0.736318	
mm_169480.1	chr1	47086723	47086923	-	1	NA	NA	NA	-233314	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.030000	0.537313	
mm_94059.1	chr10	128337869	128338069	-	1	NA	NA	NA	242	NM_026444	12974	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0.100000	0.716418	
mm_66703.1	chr7	45920757	45920957	-	1	NA	NA	NA	-8	NM_001146346	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.015000	0.601990	
mm_76501.1	chr8	86764569	86764769	-	1	NA	NA	NA	-18663	NM_009172	20437	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	seven in absentia 1A	protein-coding	0.035000	0.532338	
mm_27087.1	chr3	30013259	30013459	-	1	NA	NA	NA	-155	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.015000	0.462687	
mm_79624.1	chr9	59291452	59291652	+	1	NA	NA	NA	-20	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.110000	0.671642	
mm_168394.1	chr1	128266958	128267158	-	1	NA	NA	NA	22877	NM_026390	67812	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0.040000	0.512438	
mm_31904.1	chr4	84429363	84429563	+	1	NA	NA	NA	245623	NM_172870	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.020000	0.393035	
mm_112807.1	chr13	20748248	20748448	+	1	NA	NA	NA	-45765	NM_001281854	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.457711	
mm_154330.1	chrM	2970	3170	+	1	NA	NA	NA	NA	NA									0.015000	0.393035	
mm_82337.1	chr9	10412202	10412402	-	1	NA	NA	NA	492424	NM_001033359	244682	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0.000000	0.303483	
mm_5460.1	chr1	36369001	36369201	-	1	NA	NA	NA	80	NM_172652	226976	Mm.24734	NM_172652	ENSMUSG00000010453	Kansl3	4632411B12Rik|4932435K23|AI431067|AI647574|C85723|Kiaa1310|mKIAA1310	KAT8 regulatory NSL complex subunit 3	protein-coding	0.145000	0.736318	
mm_9665.1	chr1	177796576	177796776	-	1	NA	NA	NA	-167	NM_007422	11566	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.110000	0.756219	
mm_140923.1	chr17	24220529	24220729	-	1	NA	NA	NA	140	NM_028056	72016	Mm.23881	NM_028056	ENSMUSG00000024118	1600002H07Rik	-	RIKEN cDNA 1600002H07 gene	protein-coding	0.090000	0.636816	
mm_23129.1	chr3	37714609	37714809	+	1	NA	NA	NA	9651	NM_198657	381438	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.045000	0.557214	
mm_171763.1	chr5	107289394	107289594	-	1	NA	NA	NA	101	NM_011578	21814	Mm.200775	NM_011578	ENSMUSG00000029287	Tgfbr3	1110036H20Rik|AU015626|AW215636|TBRIII	transforming growth factor, beta receptor III	protein-coding	0.105000	0.681592	
mm_63896.1	chr7	138848422	138848622	+	1	NA	NA	NA	2136	NM_026391	52432	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	0.015000	0.512438	-74(TTCTTTTAAAGA,-,0.00),-73(TCTTTTAAAGAC,+,0.00)
mm_38874.1	chr4	149682884	149683084	-	1	NA	NA	NA	-6895	NM_001164051	18707	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol 3-kinase catalytic delta polypeptide	protein-coding	0.005000	0.412935	
mm_64390.1	chr7	142488901	142489101	+	1	NA	NA	NA	-9835	NM_001347549	21957	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	0.005000	0.492537	
mm_68483.1	chr7	110982075	110982275	-	1	NA	NA	NA	286	NM_194464	17540	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0.010000	0.547264	12(GACCTTAAATGG,-,0.00),14(CCTTAAATGGTA,+,0.00)
mm_130833.1	chr15	101846898	101847098	-	1	NA	NA	NA	3788	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.020000	0.492537	
mm_113253.1	chr13	27849241	27849441	+	1	NA	NA	NA	-1	NM_001045532	666317		NM_001045532	ENSMUSG00000062551	Prl2c1	Ghd22	Prolactin family 2, subfamily c, member 1	protein-coding	0.010000	0.502488	-33(CACTATATAGGA,-,0.00)
mm_80197.1	chr9	72400248	72400448	+	1	NA	NA	NA	-38181	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.010000	0.432836	
mm_3903.1	chr1	161765955	161766155	+	1	NA	NA	NA	22440	NM_001205243	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.020000	0.527363	
mm_83464.1	chr9	45264126	45264326	-	1	NA	NA	NA	2481	NR_106054	102466803		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.000000	0.482587	
mm_158370.1	chrX	135025226	135025426	-	1	NA	NA	NA	11276	NR_040281	320606	Mm.439072	NR_040281	ENSMUSG00000089759	3632454L22Rik	-	RIKEN cDNA 3632454L22 gene	ncRNA	0.015000	0.532338	
mm_28132.1	chr3	87112366	87112566	-	1	NA	NA	NA	62281	NM_001170985	170643	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kin of IRRE like (Drosophila)	protein-coding	0.005000	0.527363	
mm_75318.1	chr8	41400758	41400958	-	1	NA	NA	NA	16260	NM_013522	14300	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	0.010000	0.328358	1(GCTTTACTGGCC,+,0.00)
mm_154327.1	chrM	2652	2852	+	1	NA	NA	NA	NA	NA									0.025000	0.417910	
mm_42299.1	chr5	114597754	114597954	+	1	NA	NA	NA	29603	NM_001004180	433940	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0.015000	0.477612	
mm_11584.1	chr2	33176695	33176895	+	1	NA	NA	NA	-39166	NM_011923	26360	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0.025000	0.482587	-27(GCCTTTAAAATC,-,0.00),-26(CCTTTAAAATCG,+,0.00)
mm_156219.1	chrX	134717881	134718081	+	1	NA	NA	NA	43	NM_001166379	78248	Mm.458522	NM_030066	ENSMUSG00000033460	Armcx1	3010033I09Rik|ALEX1	armadillo repeat containing, X-linked 1	protein-coding	0.030000	0.542289	
mm_112080.1	chr12	112671089	112671289	-	1	NA	NA	NA	3087	NM_001165894	11651	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.025000	0.686567	
mm_92451.1	chr10	77767254	77767454	-	1	NA	NA	NA	3971	NM_001101630	100041261	Mm.477434	NM_001101630	ENSMUSG00000095817	Gm3238	-	predicted gene 3238	protein-coding	0.005000	0.547264	-35(TCCTATAAAAGG,-,0.00)
mm_42056.1	chr5	108683445	108683645	+	1	NA	NA	NA	-8180	NM_174870	231583	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0.000000	0.472637	-49(CCCTTTAAAGTG,+,0.00),5(CACTTTATAGGC,-,0.00),7(CTTTATAGGCCC,+,0.00)
mm_126288.1	chr15	79327489	79327689	+	1	NA	NA	NA	782	NM_016915	53357	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0.020000	0.532338	-37(GCCCATTAAAAA,-,0.00)
mm_86203.1	chr9	119982765	119982965	-	1	NA	NA	NA	1793	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.025000	0.527363	
mm_86104.1	chr9	115310191	115310391	-	1	NA	NA	NA	130	NM_024222	68292	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0.125000	0.736318	
mm_64942.1	chr7	16313878	16314078	-	1	NA	NA	NA	4395	NM_133234	170770	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.100000	0.706468	
mm_21891.1	chr2	166155406	166155606	-	1	NA	NA	NA	177	NM_001252579	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.090000	0.616915	
mm_46980.1	chr5	115272793	115272993	-	1	NA	NA	NA	2	NM_001302448	50849	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	0.085000	0.616915	
mm_121731.1	chr14	18238976	18239176	-	1	NA	NA	NA	30	NM_011584	353187	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0.105000	0.721393	
mm_23519.1	chr3	60603643	60603843	+	1	NA	NA	NA	102564	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.010000	0.492537	
mm_46612.1	chr5	107986929	107987129	-	1	NA	NA	NA	48	NM_026062	67266	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0.160000	0.825871	
mm_130853.1	chr15	102004213	102004413	-	1	NA	NA	NA	29	NM_031170	16691	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0.035000	0.577114	-35(TCTTTTATAAAG,+,0.00),-33(TTTTATAAAGGG,+,0.00)
mm_103808.1	chr11	82991661	82991861	-	1	NA	NA	NA	69	NM_172796	237886	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.025000	0.537313	
mm_161862.1	chr18	32139470	32139670	-	1	NA	NA	NA	0	NM_001042767	19123	Mm.2786	NM_008934	ENSMUSG00000024386	Proc	PC	protein C	protein-coding	0.055000	0.562189	
mm_76929.1	chr8	105936911	105937111	-	1	NA	NA	NA	1381	NM_013640	19171	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0.045000	0.597015	
mm_140702.1	chr17	14665528	14665728	-	1	NA	NA	NA	28634	NM_011581	21826	Mm.26688	NM_011581	ENSMUSG00000023885	Thbs2	TSP2|Thbs-2	thrombospondin 2	protein-coding	0.005000	0.233831	
mm_172581.1	chr8	121379459	121379659	-	1	NA	NA	NA	162395	NM_029597	76405	Mm.165697	NM_029597	ENSMUSG00000031809	1700018B08Rik	1700084O22Rik	RIKEN cDNA 1700018B08 gene	protein-coding	0.000000	0.462687	
mm_10989.1	chr2	26294633	26294833	+	1	NA	NA	NA	-176	NM_177841	329366	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding	0.010000	0.527363	
mm_78450.1	chr9	32224377	32224577	+	1	NA	NA	NA	228	NM_177379	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.025000	0.532338	
mm_72325.1	chr8	78589300	78589500	+	1	NA	NA	NA	80072	NM_001282108	76775	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0.010000	0.447761	
mm_26187.1	chr3	138415364	138415564	+	1	NA	NA	NA	-33	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding	0.005000	0.472637	
mm_60356.1	chr7	44384724	44384924	+	1	NA	NA	NA	698	NM_016663	20981	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	0.070000	0.646766	
mm_38182.1	chr4	135272687	135272887	-	1	NA	NA	NA	-27	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.100000	0.726368	
mm_18749.1	chr2	73386237	73386437	-	1	NA	NA	NA	143	NM_001276443	68526	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0.075000	0.641791	
mm_110974.1	chr12	76962066	76962266	-	1	NA	NA	NA	82	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.090000	0.651741	
mm_26980.1	chr3	25590294	25590494	-	1	NA	NA	NA	562913	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.333333	
mm_97666.1	chr11	79660543	79660743	+	1	NA	NA	NA	14443	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	0.120000	0.716418	
mm_28438.1	chr3	90490642	90490842	-	1	NA	NA	NA	271	NM_133854	20615	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	0.040000	0.547264	
mm_94527.1	chr11	9049004	9049204	+	1	NA	NA	NA	-113	NM_177576	194974	Mm.79210	NM_177576	ENSMUSG00000040985	Sun3	Sunc1	Sad1 and UNC84 domain containing 3	protein-coding	0.050000	0.592040	
mm_55807.1	chr6	82939473	82939673	-	1	NA	NA	NA	196	NM_001308374	20355	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	0.130000	0.771144	
mm_11308.1	chr2	30266481	30266681	+	1	NA	NA	NA	-140	NM_001281829	227696	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	0.010000	0.512438	
mm_159722.1	chr5	34915594	34915794	+	1	NA	NA	NA	-221	NM_207277	403174	Mm.291225	NM_207277	ENSMUSG00000051246	Msantd1	A930005I04Rik|Gm144	Myb/SANT-like DNA-binding domain containing 1	protein-coding	0.010000	0.417910	-93(TCATTTATAGTC,+,0.00),-8(AGGTTTAAAAGC,-,0.00)
mm_40602.1	chr5	64320113	64320313	+	1	NA	NA	NA	89856	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.015000	0.477612	
mm_124750.1	chr15	6632773	6632973	+	1	NA	NA	NA	53026	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.010000	0.402985	
mm_76758.1	chr8	95576151	95576351	-	1	NA	NA	NA	-644	NM_001310539	70993	Mm.486561	NM_027640	ENSMUSG00000048400	Prss54	4931432M23Rik|Klkbl4	protease, serine 54	protein-coding	0.035000	0.472637	
mm_124045.1	chr14	77036884	77037084	-	1	NA	NA	NA	212	NM_001310649	108811	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	0.035000	0.477612	
mm_132778.1	chr16	44786587	44786787	+	1	NA	NA	NA	20951	NM_021325	57781	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.005000	0.393035	
mm_34649.1	chr4	150852626	150852826	+	1	NA	NA	NA	2223	NR_040649	73348	Mm.396218	NR_040649	ENSMUSG00000078492	1700045H11Rik	-	RIKEN cDNA 1700045H11 gene	ncRNA	0.015000	0.427861	-34(GAATATAAAAGC,-,0.00)
mm_102541.1	chr11	61267048	61267248	-	1	NA	NA	NA	38	NM_001331114	11671	Mm.398221	NM_007437	ENSMUSG00000010025	Aldh3a2	AI194803|Ahd-3|Ahd-3r|Ahd3|Ahd3-r|Aldh4|Aldh4-r|FALDH	aldehyde dehydrogenase family 3, subfamily A2	protein-coding	0.040000	0.592040	
mm_72423.1	chr8	82774149	82774349	+	1	NA	NA	NA	-123	NM_145600	30932	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	0.045000	0.532338	
mm_41261.1	chr5	89027905	89028105	+	1	NA	NA	NA	140745	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.000000	0.467662	
mm_166485.1	chr5	146706523	146706723	+	1	NA	NA	NA	88333	NM_011669	22217	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.030000	0.492537	-93(AGCTCTAAGAGG,-,0.00)
mm_116494.1	chr13	44869601	44869801	-	1	NA	NA	NA	132395	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.090000	0.572139	-45(AACTTTAAATGG,-,0.00)
mm_22613.1	chr3	14533814	14534014	+	1	NA	NA	NA	126	NM_028915	71710	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	0.095000	0.656716	
mm_148965.1	chr19	7494405	7494605	+	1	NA	NA	NA	67	NM_146091	109168	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0.080000	0.666667	
mm_9777.1	chr1	181144058	181144258	-	1	NA	NA	NA	46	NM_026171	67459	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	0.100000	0.641791	
mm_155026.1	chrX	42067782	42067982	+	1	NA	NA	NA	46	NM_009688	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.035000	0.626866	
mm_156747.1	chrX	159973593	159973793	+	1	NA	NA	NA	-14740	NM_001163085	270672	Mm.386889	NM_001163085	ENSMUSG00000031303	Map3k15	BC031147|MEKK15	mitogen-activated protein kinase kinase kinase 15	protein-coding	0.010000	0.412935	53(GCTTATATATGA,+,0.00)
mm_4729.1	chr1	181352557	181352757	+	1	NA	NA	NA	29	NM_001160211	72978	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	0.125000	0.776119	
mm_157626.1	chrX	56597826	56598026	-	1	NA	NA	NA	-7	NM_146234	236792	Mm.291824	NM_146234	ENSMUSG00000061273	Mmgt1	9630048L06Rik|BC032271|Emc5|Mir5116|Tmem32|mir-5116	membrane magnesium transporter 1	protein-coding	0.110000	0.666667	
mm_133151.1	chr16	70314388	70314588	+	1	NA	NA	NA	539	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.100000	0.706468	
mm_147119.1	chr18	35740122	35740322	-	1	NA	NA	NA	332	NM_001289592	72512	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0.005000	0.552239	
mm_105493.1	chr11	106159326	106159526	-	1	NA	NA	NA	716	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.015000	0.651741	
mm_25569.1	chr3	116629164	116629364	+	1	NA	NA	NA	-14677	NM_030016	229780	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	0.000000	0.422886	
mm_55893.1	chr6	83536373	83536573	-	1	NA	NA	NA	-222	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.000000	0.462687	-34(CAGCTTATAAGG,-,0.00),-32(GCTTATAAGGCC,+,0.00),6(TGGCCTAAAAGG,-,0.00)
mm_77344.1	chr8	119574428	119574628	-	1	NA	NA	NA	672	NM_175185	72552	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	0.080000	0.592040	
mm_170174.1	chr1	75715744	75715944	-	1	NA	NA	NA	169578	NM_009208	20536	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	0.010000	0.502488	
mm_105831.1	chr11	113209544	113209744	-	1	NA	NA	NA	25	NR_040276	319871	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	0.015000	0.547264	
mm_5777.1	chr1	51478298	51478498	-	1	NA	NA	NA	1	NM_028696	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.120000	0.681592	
mm_170476.1	chr19	11518467	11518667	+	1	NA	NA	NA	8	NM_027209	69774	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	0.010000	0.497512	
mm_60180.1	chr7	43077936	43078136	+	1	NA	NA	NA	59238	NM_001105061	668612	Mm.469896	NM_001105061	ENSMUSG00000091528	Gm9268	EG668612|Vmn2r64	predicted gene 9268	protein-coding	0.020000	0.552239	
mm_34363.1	chr4	144892724	144892924	+	1	NA	NA	NA	-3	NM_001172424	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.075000	0.577114	
mm_481.1	chr1	36761251	36761451	+	1	NA	NA	NA	-447	NM_009539	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.030000	0.532338	-94(GCTTCTATAAGG,-,0.00)
mm_86864.1	chr10	21993782	21993982	+	1	NA	NA	NA	-8	NM_001161850	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.040000	0.557214	
mm_12717.1	chr2	77725660	77725860	+	1	NA	NA	NA	-22488	NM_001113399	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.020000	0.482587	
mm_34728.1	chr4	152178091	152178291	+	1	NA	NA	NA	91	NM_133348	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.125000	0.736318	
mm_16452.1	chr2	180463953	180464153	+	1	NA	NA	NA	3075	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.050000	0.631841	
mm_137208.1	chr17	24038143	24038343	+	1	NA	NA	NA	0	NM_175440	213171	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	0.020000	0.572139	
mm_166904.1	chr7	28810868	28811068	+	1	NA	NA	NA	78	NM_177301	15388	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.140000	0.741294	
mm_72152.1	chr8	72152473	72152673	+	1	NA	NA	NA	-8627	NM_023126	17274	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	0.015000	0.447761	
mm_56248.1	chr6	90754187	90754387	-	1	NA	NA	NA	-37758	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.010000	0.512438	
mm_54493.1	chr6	35509962	35510162	-	1	NA	NA	NA	29826	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.368159	
mm_73029.1	chr8	94173274	94173474	+	1	NA	NA	NA	756	NM_008630	17750	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	0.035000	0.592040	
mm_28892.1	chr3	97888653	97888853	-	1	NA	NA	NA	-46	NM_001289701	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.065000	0.641791	
mm_87519.1	chr10	52800120	52800320	+	1	NA	NA	NA	109719	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding	0.005000	0.313433	
mm_71163.1	chr8	40511726	40511926	+	1	NA	NA	NA	43	NM_033560	52348	Mm.489696	NM_033560	ENSMUSG00000031600	Vps37a	2210018P21Rik|4930592A21Rik|AW261445|D8Ertd531e	vacuolar protein sorting 37A	protein-coding	0.120000	0.756219	
mm_28377.1	chr3	89960490	89960690	-	1	NA	NA	NA	2742	NM_001081182	54667	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	0.080000	0.711443	
mm_133061.1	chr16	58465387	58465587	+	1	NA	NA	NA	56952	NM_028523	73379	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.035000	0.577114	
mm_83169.1	chr9	40531199	40531399	-	1	NA	NA	NA	-75535	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.110000	0.686567	
mm_151202.1	chr19	53539414	53539614	+	1	NA	NA	NA	10196	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.005000	0.378109	-40(CTTTTTAAGAGC,+,0.00)
mm_124359.1	chr14	105176795	105176995	-	1	NA	NA	NA	432	NM_134077	74213	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0.145000	0.726368	
mm_104082.1	chr11	86602137	86602337	-	1	NA	NA	NA	-18079	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.373134	
mm_56308.1	chr6	91843796	91843996	-	1	NA	NA	NA	-34157	NM_172730	232236	Mm.234879	NM_172730	ENSMUSG00000034083	Ccdc174	C130022K22Rik	coiled-coil domain containing 174	protein-coding	0.165000	0.825871	
mm_134604.1	chr16	20622230	20622430	-	1	NA	NA	NA	-1052	NM_028420	73047	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	0.060000	0.656716	
mm_101231.1	chr11	20332571	20332771	-	1	NA	NA	NA	42	NM_018861	55963	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.055000	0.611940	
mm_21030.1	chr2	152414750	152414950	-	1	NA	NA	NA	194	NM_175126	67917	Mm.391810	NM_175126	ENSMUSG00000074682	Zcchc3	2810406K24Rik	zinc finger, CCHC domain containing 3	protein-coding	0.115000	0.691542	
mm_140214.1	chr17	83810668	83810868	+	1	NA	NA	NA	36022	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.010000	0.462687	
mm_121109.1	chr14	101653914	101654114	+	1	NA	NA	NA	47	NM_016723	50933	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	0.130000	0.736318	
mm_161504.1	chr15	97731296	97731496	-	1	NA	NA	NA	9	NM_001168693	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.015000	0.577114	23(GTCTTTAAAAGG,-,0.00),24(TCTTTAAAAGGA,+,0.00)
mm_30910.1	chr4	32426593	32426793	+	1	NA	NA	NA	9258	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.060000	0.572139	
mm_157377.1	chrX	37878738	37878938	-	1	NA	NA	NA	106	NM_001004193	434768	Mm.336025	NM_001004193	ENSMUSG00000064137	Rhox8	Tox	reproductive homeobox 8	protein-coding	0.015000	0.452736	
mm_4768.1	chr1	182484133	182484333	+	1	NA	NA	NA	33250	NM_009794	12334	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.040000	0.616915	
mm_67428.1	chr7	80370687	80370887	-	1	NA	NA	NA	588	NM_172903	140481	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	0.085000	0.646766	
mm_54300.1	chr6	29478302	29478502	-	1	NA	NA	NA	6965	NM_001145360	668210	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	0.010000	0.552239	
mm_41764.1	chr5	103425117	103425317	+	1	NA	NA	NA	25	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.145000	0.756219	
mm_170459.1	chr1	89096792	89096992	-	1	NA	NA	NA	26430	NM_133816	98402	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.045000	0.492537	
mm_61628.1	chr7	80246270	80246470	+	1	NA	NA	NA	-6	NM_177765	269954	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	0.095000	0.651741	
mm_151875.1	chr19	5798278	5798478	-	1	NA	NA	NA	-2397	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.005000	0.308458	
mm_69954.1	chr7	142372658	142372858	-	1	NA	NA	NA	-431	NM_001347542	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.015000	0.572139	-31(GGGCTTAAAAAG,-,0.00),-29(GCTTAAAAAGCT,+,0.00)
mm_125453.1	chr15	51877644	51877844	+	1	NA	NA	NA	303	NM_030132	78581	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	0.065000	0.606965	
mm_29308.1	chr3	107943591	107943791	-	1	NA	NA	NA	58	NM_008184	14867	Mm.458154	NM_008184	ENSMUSG00000068762	Gstm6	-	glutathione S-transferase, mu 6	protein-coding	0.030000	0.532338	
mm_9272.1	chr1	171633979	171634179	-	1	NA	NA	NA	7821	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.000000	0.437811	
mm_115873.1	chr13	21721703	21721903	-	1	NA	NA	NA	-241	NM_178200	319186	Mm.277425	NM_178200	ENSMUSG00000096807	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	0.070000	0.562189	
mm_80361.1	chr9	75231923	75232123	+	1	NA	NA	NA	9	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.070000	0.666667	
mm_167400.1	chr8	95434746	95434946	-	1	NA	NA	NA	23	NM_008187	14894	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.120000	0.731343	
mm_58125.1	chr6	140101057	140101257	-	1	NA	NA	NA	59632	NM_007605	12344	Mm.12817	NM_007605	ENSMUSG00000041791	Capza3	510-4|Cappa3|Gsg3|Tex8|repro32	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding	0.005000	0.427861	
mm_33150.1	chr4	125176485	125176685	+	1	NA	NA	NA	-48704	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.005000	0.437811	-32(CCTTAAAGACAG,+,0.00)
mm_96508.1	chr11	68451580	68451780	+	1	NA	NA	NA	19555	NM_177320	320207	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik	phosphoinositide-3-kinase, regulatory subunit 5, p101	protein-coding	0.015000	0.502488	
mm_95409.1	chr11	49982981	49983181	+	1	NA	NA	NA	-42250	NM_021540	59044	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.010000	0.462687	
mm_158089.1	chrX	101332426	101332626	-	1	NA	NA	NA	33347	NM_172932	245537	Mm.121508	NM_172932	ENSMUSG00000031302	Nlgn3	A230085M13Rik|HNL3|NL3	neuroligin 3	protein-coding	0.065000	0.601990	
mm_24602.1	chr3	93445357	93445557	+	1	NA	NA	NA	3127	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.050000	0.562189	
mm_147504.1	chr18	50053555	50053755	-	1	NA	NA	NA	373	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.060000	0.646766	
mm_112723.1	chr13	19192143	19192343	+	1	NA	NA	NA	203570	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.447761	
mm_166295.1	chr5	104108383	104108583	+	1	NA	NA	NA	5605	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding	0.010000	0.482587	
mm_93431.1	chr10	109010553	109010753	-	1	NA	NA	NA	322	NM_009306	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding	0.065000	0.656716	
mm_158216.1	chrX	105928441	105928641	-	1	NA	NA	NA	831	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.060000	0.661692	
mm_60263.1	chr7	43824405	43824605	+	1	NA	NA	NA	-39	NM_001164697	19144	Mm.3944	NM_011177	ENSMUSG00000050063	Klk6	AI849898|BSP|Bssp|Klk29|MSP|Prss18|Prss9|neurosin	kallikrein related-peptidase 6	protein-coding	0.025000	0.542289	
mm_41463.1	chr5	90934996	90935196	+	1	NA	NA	NA	3900	NM_026788	665563	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	0.005000	0.412935	44(ATGTCTTAAAGG,-,0.00),70(TTCTCTTTAAGG,-,0.00)
mm_39177.1	chr4	155783926	155784126	-	1	NA	NA	NA	1848	NM_001033394	320587	Mm.384382	NM_001033394	ENSMUSG00000073680	Tmem88b	A230069A22Rik	transmembrane protein 88B	protein-coding	0.025000	0.517413	
mm_89816.1	chr10	104422469	104422669	+	1	NA	NA	NA	135300	NR_105838	102465222		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA	0.000000	0.427861	67(TCTTTTAGAGAG,+,0.00)
mm_52795.1	chr6	121270444	121270644	+	1	NA	NA	NA	24638	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.020000	0.412935	77(CTATTTATAAGC,-,0.00)
mm_113058.1	chr13	23710558	23710758	+	1	NA	NA	NA	196	NM_001347493	15216	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0.055000	0.631841	
mm_67482.1	chr7	80712855	80713055	-	1	NA	NA	NA	-24078	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.010000	0.407960	
mm_20842.1	chr2	148021941	148022141	-	1	NA	NA	NA	23423	NM_001291067	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.010000	0.522388	
mm_80514.1	chr9	80004125	80004325	+	1	NA	NA	NA	-26343	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.030000	0.502488	
mm_135320.1	chr16	38783419	38783619	-	1	NA	NA	NA	16684	NM_178924	22268	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0.010000	0.447761	
mm_92938.1	chr10	84551878	84552078	-	1	NA	NA	NA	1360	NR_040658	442847	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	0.000000	0.537313	
mm_164343.1	chr16	15301300	15301500	-	1	NA	NA	NA	293118	NM_001159351	70620	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	0.000000	0.293532	
mm_160218.1	chr7	100176811	100177011	+	1	NA	NA	NA	241	NM_001190869	57442	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	0.000000	0.412935	
mm_118258.1	chr13	112439894	112440094	-	1	NA	NA	NA	-24076	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.030000	0.532338	
mm_161254.1	chr13	105443569	105443769	+	1	NA	NA	NA	-24	NM_008308	15550	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0.030000	0.577114	
mm_53923.1	chr6	4531183	4531383	-	1	NA	NA	NA	25665	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.010000	0.507463	
mm_69529.1	chr7	135652188	135652388	-	1	NA	NA	NA	26	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.025000	0.462687	-97(CTCTTTAAAAAA,-,0.00)
mm_112766.1	chr13	19357431	19357631	+	1	NA	NA	NA	38282	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.025000	0.462687	
mm_42507.1	chr5	115506611	115506811	+	1	NA	NA	NA	35	NM_133915	19303	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0.160000	0.796020	
mm_146448.1	chr18	86394677	86394877	+	1	NA	NA	NA	-175	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.020000	0.482587	-57(ACCTTTAAAAAG,-,0.00),-55(CTTTAAAAAGTG,+,0.00)
mm_100624.1	chr11	121702326	121702526	+	1	NA	NA	NA	-1	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.100000	0.716418	
mm_126892.1	chr15	89497930	89498130	+	1	NA	NA	NA	-1827	NM_021423	58234	Mm.146855	NM_021423	ENSMUSG00000022623	Shank3	AI841104|SHANK3c-3|SHANK3c-4|Shank3b	SH3/ankyrin domain gene 3	protein-coding	0.020000	0.587065	70(GGTTTTTTAAGG,-,0.00)
mm_58405.1	chr7	3219443	3219643	+	1	NA	NA	NA	61	NR_030276	100124471		NR_030276	ENSMUSG00000078032	Mir291b	Mirn291b|mir-291b|mmu-mir-291b	microRNA 291b	ncRNA	0.045000	0.532338	
mm_28215.1	chr3	88395876	88396076	-	1	NA	NA	NA	-11510	NM_007541	12096	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	0.030000	0.572139	
mm_133981.1	chr16	4549321	4549521	-	1	NA	NA	NA	10299	NM_031182	83383	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.040000	0.646766	
mm_54115.1	chr6	17694605	17694805	-	1	NA	NA	NA	711	NM_001289625	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.120000	0.711443	
mm_8635.1	chr1	156420807	156421007	-	1	NA	NA	NA	8	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.095000	0.661692	
mm_4371.1	chr1	172121632	172121832	+	1	NA	NA	NA	-5023	NM_001159525	19298	Mm.247764	NM_023041	ENSMUSG00000003464	Pex19	Pxf	peroxisomal biogenesis factor 19	protein-coding	0.030000	0.517413	
mm_134405.1	chr16	17654583	17654783	-	1	NA	NA	NA	8213	NM_001166164	72315	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.000000	0.522388	
mm_101910.1	chr11	49679026	49679226	-	1	NA	NA	NA	15531	NM_170727	68662	Mm.22802	NM_054037	ENSMUSG00000064057	Scgb3a1	HIN-1|LuLeu2|Pnsp2|UGRP2|Utgrp2	secretoglobin, family 3A, member 1	protein-coding	0.025000	0.447761	-48(TTGTATAAAAAG,-,0.00)
mm_154447.1	chrM	1548	1748	-	1	NA	NA	NA	NA	NA									0.010000	0.303483	32(GCTTTTAGGCCT,+,0.00),75(CACTATTAAAGG,-,0.00)
mm_81405.1	chr9	109051086	109051286	+	1	NA	NA	NA	-3680	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.020000	0.517413	-8(CCTCATATGCGC,+,0.00)
mm_80001.1	chr9	67191542	67191742	+	1	NA	NA	NA	45084	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	0.015000	0.557214	
mm_36549.1	chr4	86672461	86672661	-	1	NA	NA	NA	-2502	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.030000	0.492537	-33(CTTTATAAAAAG,-,0.00)
mm_63977.1	chr7	139972278	139972478	+	1	NA	NA	NA	6377	NM_001347614	381933	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0.035000	0.547264	
mm_82245.1	chr9	4635169	4635369	-	1	NA	NA	NA	160965	NM_001113180	14802	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.005000	0.303483	
mm_171424.1	chr4	134103841	134104041	-	1	NA	NA	NA	1358	NM_026257	67586	Mm.282029	NM_026257	ENSMUSG00000012126	Ubxn11	4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5	UBX domain protein 11	protein-coding	0.020000	0.398010	
mm_40883.1	chr5	74572402	74572602	+	1	NA	NA	NA	37020	NM_001159574	66899	Mm.272468	NM_024183	ENSMUSG00000029227	Fip1l1	1300019H17Rik|Rje	FIP1 like 1 (S. cerevisiae)	protein-coding	0.010000	0.492537	
mm_103900.1	chr11	83575787	83575987	-	1	NA	NA	NA	2749	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.010000	0.487562	
mm_67056.1	chr7	67372752	67372952	-	1	NA	NA	NA	6	NM_001291192	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.145000	0.736318	
mm_153822.1	chr19	46304533	46304733	-	1	NA	NA	NA	-104	NM_001177369	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.070000	0.621891	
mm_30246.1	chr3	146571692	146571892	-	1	NA	NA	NA	-25357	NM_009474	22262	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.000000	0.477612	
mm_111000.1	chr12	78846701	78846901	-	1	NA	NA	NA	14837	NM_023721	73834	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	0.000000	0.308458	
mm_95881.1	chr11	58102768	58102968	+	1	NA	NA	NA	-1285	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.015000	0.537313	
mm_50477.1	chr6	48987966	48988166	+	1	NA	NA	NA	1205	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.010000	0.542289	
mm_143676.1	chr17	80029134	80029334	-	1	NA	NA	NA	33034	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.000000	0.348259	-83(TTTTTTAAAGGC,+,0.00)
mm_138729.1	chr17	36958464	36958664	+	1	NA	NA	NA	-28	NM_029602	76416	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	0.110000	0.606965	
mm_133789.1	chr16	95258127	95258327	+	1	NA	NA	NA	669	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.005000	0.477612	
mm_118924.1	chr14	27000573	27000773	+	1	NA	NA	NA	311	NM_010420	15209	Mm.4802	NM_010420	ENSMUSG00000040726	Hesx1	HES-1|Rpx	homeobox gene expressed in ES cells	protein-coding	0.040000	0.552239	
mm_65916.1	chr7	30195466	30195666	-	1	NA	NA	NA	-518	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.015000	0.472637	
mm_36378.1	chr4	76854218	76854418	-	1	NA	NA	NA	1357577	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.005000	0.363184	
mm_29235.1	chr3	107214197	107214397	-	1	NA	NA	NA	7435	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.582090	
mm_128797.1	chr15	66812624	66812824	-	1	NA	NA	NA	19105	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.020000	0.537313	
mm_145812.1	chr18	65430010	65430210	+	1	NA	NA	NA	-887	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.427861	
mm_118592.1	chr14	20674203	20674403	+	1	NA	NA	NA	-18	NM_172596	218811	Mm.173119	NM_172596	ENSMUSG00000039367	Sec24c	2610204K03Rik|mKIAA0079	Sec24 related gene family, member C (S. cerevisiae)	protein-coding	0.085000	0.651741	
mm_38552.1	chr4	141606008	141606208	-	1	NA	NA	NA	-56	NM_133754	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.025000	0.512438	
mm_88476.1	chr10	77606607	77606807	+	1	NA	NA	NA	109	NM_001301671	20610	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.115000	0.676617	
mm_764.1	chr1	43984944	43985144	+	1	NA	NA	NA	34962	NM_001013799	433294	Mm.123621	NM_001013799	ENSMUSG00000047343	Mettl21c	A530098C11Rik	methyltransferase like 21C	protein-coding	0.000000	0.293532	
mm_119772.1	chr14	54175878	54176078	+	1	NA	NA	NA	77951	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.477612	
mm_78487.1	chr9	32699716	32699916	+	1	NA	NA	NA	3774	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.015000	0.517413	
mm_71001.1	chr8	31090054	31090254	+	1	NA	NA	NA	492	NM_025869	66959	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0.025000	0.577114	
mm_138844.1	chr17	40519937	40520137	+	1	NA	NA	NA	15	NM_001177584	100126778	Mm.422023	NM_001177584	ENSMUSG00000090747	Esp8	Gm17495	exocrine gland secreted peptide 8	protein-coding	0.015000	0.507463	
mm_102364.1	chr11	58386729	58386929	-	1	NA	NA	NA	6183	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.020000	0.432836	
mm_48182.1	chr5	137333468	137333668	-	1	NA	NA	NA	14	NM_031406	83704	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	0.080000	0.661692	
mm_153749.1	chr19	45006318	45006518	-	1	NA	NA	NA	24	NM_053164	94067	Mm.44174	NM_053164	ENSMUSG00000025208	Mrpl43	4930442D21Rik|bMRP36a	mitochondrial ribosomal protein L43	protein-coding	0.110000	0.646766	
mm_61185.1	chr7	62376907	62377107	+	1	NA	NA	NA	28	NM_013779	27385	Mm.45207	NM_013779	ENSMUSG00000056972	Magel2	Mage-l2|NDNL1|nM15|ns7	melanoma antigen, family L, 2	protein-coding	0.050000	0.641791	
mm_135539.1	chr16	49771588	49771788	-	1	NA	NA	NA	72394	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.010000	0.402985	
mm_25381.1	chr3	107212704	107212904	+	1	NA	NA	NA	8928	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.472637	
mm_150788.1	chr19	44301275	44301475	+	1	NA	NA	NA	-1796	NR_039574	100628619		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.055000	0.567164	
mm_17005.1	chr2	18799930	18800130	-	1	NA	NA	NA	1788	NR_131254	66774	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.070000	0.557214	
mm_123984.1	chr14	75592931	75593131	-	1	NA	NA	NA	85	NM_001164140	67926	Mm.23361	NM_026457	ENSMUSG00000034913	Spert	1700086N05Rik|AI596460|Nurit	spermatid associated	protein-coding	0.000000	0.422886	
mm_144803.1	chr18	36281010	36281210	+	1	NA	NA	NA	-52	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.170000	0.756219	
mm_124263.1	chr14	102978569	102978769	-	1	NA	NA	NA	3963	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.005000	0.467662	
mm_24540.1	chr3	93292963	93293163	+	1	NA	NA	NA	-26686	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.025000	0.616915	
mm_139606.1	chr17	57303834	57304034	+	1	NA	NA	NA	24834	NM_001163815	22324	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.020000	0.432836	
mm_73885.1	chr8	119345330	119345530	+	1	NA	NA	NA	892	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.025000	0.572139	
mm_94562.1	chr11	11684897	11685097	+	1	NA	NA	NA	-928	NM_009578	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.045000	0.606965	
mm_136583.1	chr17	4794616	4794816	+	1	NA	NA	NA	159736	NR_130984	75117	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA	0.000000	0.482587	-1(GCCCATTAATGC,-,0.00)
mm_76974.1	chr8	106337855	106338055	-	1	NA	NA	NA	33	NM_021491	58994	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0.125000	0.711443	
mm_39387.1	chr5	13398615	13398815	+	1	NA	NA	NA	-282	NM_001243073	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.020000	0.472637	
mm_33627.1	chr4	132794940	132795140	+	1	NA	NA	NA	1324	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.015000	0.532338	
mm_64608.1	chr7	3249633	3249833	-	1	NA	NA	NA	7	NM_001033431	378425	Mm.277152	NM_001033431	ENSMUSG00000078817	Nlrp12	Nalp12|PYPAF7	NLR family, pyrin domain containing 12	protein-coding	0.015000	0.457711	
mm_102585.1	chr11	61854948	61855148	-	1	NA	NA	NA	44	NM_013881	29869	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.170000	0.756219	
mm_166519.1	chr6	18169741	18169941	+	1	NA	NA	NA	-846	NM_021050	12638	Mm.15621	NM_021050	ENSMUSG00000041301	Cftr	AW495489|Abcc7	cystic fibrosis transmembrane conductance regulator	protein-coding	0.000000	0.442786	
mm_150019.1	chr19	29370168	29370368	+	1	NA	NA	NA	2830	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.035000	0.567164	
mm_141457.1	chr17	30538005	30538205	-	1	NA	NA	NA	38182	NM_172618	224671	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0.010000	0.383085	
mm_118086.1	chr13	103758169	103758369	-	1	NA	NA	NA	6313	NM_172592	218543	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0.025000	0.452736	
mm_51397.1	chr6	78371708	78371908	+	1	NA	NA	NA	923	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.015000	0.452736	
mm_66696.1	chr7	45920075	45920275	-	1	NA	NA	NA	674	NM_001146346	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.005000	0.562189	
mm_135735.1	chr16	55838496	55838696	-	1	NA	NA	NA	45	NM_030612	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.035000	0.522388	-91(CCCTATAAAGGA,+,0.00),-91(CCCTATAAAGGA,-,0.00)
mm_120536.1	chr14	67233806	67234006	+	1	NA	NA	NA	614	NM_001276387	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.045000	0.557214	-33(GATTTTAAAAGG,-,0.00)
mm_2727.1	chr1	128197574	128197774	+	1	NA	NA	NA	-4687	NR_029543	387147		NR_029543	ENSMUSG00000065520	Mir128-1	Mirn128|Mirn128-1|Mirn128a|mir-128-1	microRNA 128-1	ncRNA	0.000000	0.338308	
mm_161441.1	chr15	72545986	72546186	-	1	NA	NA	NA	193	NM_001033876	223604	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding	0.055000	0.537313	
mm_14081.1	chr2	124649245	124649445	+	1	NA	NA	NA	-4236	NM_199240	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.000000	0.487562	-32(GCCCATAAAAGC,-,0.00)
mm_83529.1	chr9	46230144	46230344	-	1	NA	NA	NA	1614	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.055000	0.611940	
mm_48696.1	chr5	146832748	146832948	-	1	NA	NA	NA	-42	NM_019647	19933	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	0.085000	0.592040	
mm_167510.1	chr9	13514588	13514788	+	1	NA	NA	NA	83327	NR_028271	18689	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.000000	0.442786	
mm_127476.1	chr15	101273878	101274078	+	1	NA	NA	NA	7132	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.040000	0.582090	
mm_70413.1	chr8	11448426	11448626	+	1	NA	NA	NA	-29403	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.010000	0.502488	
mm_131313.1	chr16	11631983	11632183	+	1	NA	NA	NA	-147619	NR_126430	73761	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.005000	0.432836	
mm_20228.1	chr2	125788261	125788461	-	1	NA	NA	NA	-5491	NM_177608	70354	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.015000	0.422886	-34(GAGTATAAATAG,-,0.00)
mm_66158.1	chr7	31151338	31151538	-	1	NA	NA	NA	-388	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.015000	0.597015	
mm_57990.1	chr6	136172112	136172312	-	1	NA	NA	NA	1299	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.050000	0.592040	
mm_60423.1	chr7	44476407	44476607	+	1	NA	NA	NA	6160	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.427861	
mm_11162.1	chr2	28556656	28556856	+	1	NA	NA	NA	6647	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.020000	0.547264	
mm_17164.1	chr2	25272256	25272456	-	1	NA	NA	NA	62	NM_023464	68475	Mm.21444	NM_023464	ENSMUSG00000026966	Ssna1	1110003H09Rik|1190004J23Rik|AA934184|N14|NA14	SS nuclear autoantigen 1	protein-coding	0.120000	0.681592	
mm_73549.1	chr8	108948064	108948264	+	1	NA	NA	NA	11304	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.030000	0.542289	
mm_157243.1	chrX	18146995	18147195	-	1	NA	NA	NA	1225	NM_028568	73547	Mm.159027	NM_028568	ENSMUSG00000025043	Dusp21	1700094E07Rik|DSP21	dual specificity phosphatase 21	protein-coding	0.000000	0.502488	
mm_21978.1	chr2	167367163	167367363	-	1	NA	NA	NA	-18085	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.005000	0.383085	
mm_15455.1	chr2	157424135	157424335	+	1	NA	NA	NA	-58	NM_009271	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.170000	0.800995	
mm_102561.1	chr11	61453906	61454106	-	1	NA	NA	NA	-14	NM_001291024	22671	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	0.025000	0.587065	
mm_88518.1	chr10	78051967	78052167	+	1	NA	NA	NA	2108	NM_001284197	54427	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.015000	0.557214	
mm_3609.1	chr1	151755325	151755525	+	1	NA	NA	NA	51	NM_001311166	66967	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0.115000	0.726368	
mm_77729.1	chr8	126852621	126852821	-	1	NA	NA	NA	93200	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.010000	0.497512	
mm_169980.1	chr17	14991317	14991517	+	1	NA	NA	NA	12553	NM_001123370	100041574	Mm.393767	NM_001123370	ENSMUSG00000036552	9030025P20Rik	D17Zt9e	RIKEN cDNA 9030025P20 gene	protein-coding	0.035000	0.577114	-52(CCATTTAAACAC,+,0.00)
mm_134576.1	chr16	20403229	20403429	-	1	NA	NA	NA	23065	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.010000	0.432836	
mm_128841.1	chr15	68401516	68401716	-	1	NA	NA	NA	-60327	NR_029718	387228		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0.005000	0.452736	
mm_95458.1	chr11	50377668	50377868	+	1	NA	NA	NA	49	NM_001347487	59013	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.080000	0.601990	
mm_23556.1	chr3	62338877	62339077	+	1	NA	NA	NA	200	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	0.110000	0.736318	
mm_114811.1	chr13	91496145	91496345	+	1	NA	NA	NA	35148	NM_024186	66970	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.005000	0.313433	88(CAGTATAAAAGG,-,0.00)
mm_173018.1	chrX	101085268	101085468	-	1	NA	NA	NA	37	NM_001301840	11989	Mm.5140	NM_007515	ENSMUSG00000031297	Slc7a3	Atrc3|CAT-3|CAT3|SLC7A1|SLC7A2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 3	protein-coding	0.035000	0.572139	
mm_76268.1	chr8	84066341	84066541	-	1	NA	NA	NA	-395	NM_009055	19724	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	0.085000	0.592040	
mm_162623.1	chr1	183418425	183418625	+	1	NA	NA	NA	55	NM_030175	78772	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0.025000	0.636816	
mm_153761.1	chr19	45591536	45591736	-	1	NA	NA	NA	31021	NM_172639	226162	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	5330431N19Rik|Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.015000	0.557214	
mm_138693.1	chr17	35979870	35980070	+	1	NA	NA	NA	15	NM_008136	14670	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	0.175000	0.776119	
mm_1256.1	chr1	63114305	63114505	+	1	NA	NA	NA	-66	NR_045915	100380944	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602|OTTMUSG00000002611	INO80 complex subunit D, opposite strand	ncRNA	0.045000	0.582090	
mm_123398.1	chr14	63419453	63419653	-	1	NA	NA	NA	-2366	NM_007549	12143	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.015000	0.532338	
mm_5132.1	chr1	9696769	9696969	-	1	NA	NA	NA	3340	NM_001290397	17864	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	0.005000	0.353234	
mm_71253.1	chr8	40917055	40917255	+	1	NA	NA	NA	-9078	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.010000	0.447761	
mm_58331.1	chr6	146577716	146577916	-	1	NA	NA	NA	19	NM_138757	71177	Mm.271774	NM_138757	ENSMUSG00000040250	Asun	4933424B01Rik|Spata30	asunder, spermatogenesis regulator	protein-coding	0.075000	0.671642	
mm_114215.1	chr13	56181699	56181899	+	1	NA	NA	NA	-2914	NM_001168615	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.025000	0.542289	
mm_70271.1	chr8	3598220	3598420	+	1	NA	NA	NA	10870	NM_001347111	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.000000	0.517413	
mm_12916.1	chr2	84936562	84936762	+	1	NA	NA	NA	16	NM_021398	58207	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	0.055000	0.666667	
mm_78624.1	chr9	38718204	38718404	+	1	NA	NA	NA	36	NM_172767	67776	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0.010000	0.447761	-3(CACTTTTAAAGC,-,0.00),-2(ACTTTTAAAGCT,+,0.00),73(CCCTCTAAAAGG,-,0.00)
mm_112254.1	chr12	113807676	113807876	-	1	NA	NA	NA	263868	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.005000	0.537313	-88(CCTTTTATCCCC,+,0.00)
mm_35302.1	chr4	22835390	22835590	-	1	NA	NA	NA	344942	NR_131335	105500046		NR_131335	ENSMUSG00000107859	Gm30731	Pnky|lnc-pou3f2	predicted gene, 30731	ncRNA	0.005000	0.452736	
mm_75668.1	chr8	67693415	67693615	-	1	NA	NA	NA	124780	NM_027626	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.000000	0.308458	
mm_132811.1	chr16	45162462	45162662	+	1	NA	NA	NA	3733	NM_026402	67841	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	0.000000	0.253731	
mm_29515.1	chr3	116423914	116424114	-	1	NA	NA	NA	18	NM_001080818	229776	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.060000	0.671642	
mm_154420.1	chrM	16038	16238	+	1	NA	NA	NA	NA	NA									0.000000	0.328358	
mm_36686.1	chr4	96553493	96553693	-	1	NA	NA	NA	58	NM_010008	13110	Mm.98200	NM_010008	ENSMUSG00000052914	Cyp2j6	-	cytochrome P450, family 2, subfamily j, polypeptide 6	protein-coding	0.025000	0.562189	
mm_167579.1	chr9	45293144	45293344	+	1	NA	NA	NA	-24095	NM_001324486	16154	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0.000000	0.298507	
mm_79908.1	chr9	65435721	65435921	+	1	NA	NA	NA	39	NM_027134	69606	Mm.287956	NM_027134	ENSMUSG00000059183	Mtfmt	2310020P08Rik	mitochondrial methionyl-tRNA formyltransferase	protein-coding	0.095000	0.676617	
mm_83581.1	chr9	48340596	48340796	-	1	NA	NA	NA	202	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.030000	0.477612	4(CTTTATATAGAA,+,0.00)
mm_111599.1	chr12	101976806	101977006	-	1	NA	NA	NA	932	NM_016856	51786	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.040000	0.467662	
mm_72454.1	chr8	83170580	83170780	+	1	NA	NA	NA	5328	NM_027758	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.015000	0.398010	
mm_126813.1	chr15	87715456	87715656	+	1	NA	NA	NA	80387	NR_105817	102465209		NR_105817	ENSMUSG00000098938	Mir6393	Gm27424|mmu-mir-6393	microRNA 6393	ncRNA	0.020000	0.611940	
mm_102035.1	chr11	51833981	51834181	-	1	NA	NA	NA	23400	NM_199299	76901	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.035000	0.462687	
mm_85141.1	chr9	95815202	95815402	-	1	NA	NA	NA	29977	NM_001033210	102502	Mm.11869	NM_001033210	ENSMUSG00000049493	Pls1	AI427122	plastin 1 (I-isoform)	protein-coding	0.025000	0.487562	
mm_164326.1	chr16	6349013	6349213	+	1	NA	NA	NA	373526	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA	0.080000	0.646766	
mm_125072.1	chr15	25971885	25972085	+	1	NA	NA	NA	-12381	NM_144523	52521	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.010000	0.517413	
mm_52211.1	chr6	103314541	103314741	+	1	NA	NA	NA	-196235	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.000000	0.363184	
mm_27443.1	chr3	51813919	51814119	-	1	NA	NA	NA	152840	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.010000	0.512438	
mm_42260.1	chr5	114100239	114100439	+	1	NA	NA	NA	6	NM_001033202	100756	Mm.240421	NM_001033202	ENSMUSG00000029592	Usp30	6330590F17Rik|AI851327|D5Ertd483e	ubiquitin specific peptidase 30	protein-coding	0.130000	0.696517	
mm_145732.1	chr18	64264953	64265153	+	1	NA	NA	NA	10694	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.045000	0.547264	
mm_68825.1	chr7	126197902	126198102	-	1	NA	NA	NA	2406	NM_028816	74204	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|mKIAA0370	exportin 6	protein-coding	0.010000	0.482587	
mm_104351.1	chr11	94297701	94297901	-	1	NA	NA	NA	24110	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.020000	0.437811	
mm_80002.1	chr9	67204977	67205177	+	1	NA	NA	NA	31649	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	0.010000	0.467662	57(TCTTTTAGACTC,+,0.00)
mm_83788.1	chr9	52168699	52168899	-	1	NA	NA	NA	-688	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.115000	0.706468	
mm_164715.1	chr17	56103154	56103354	-	1	NA	NA	NA	6548	NM_020568	57435	Mm.12966	NM_020568	ENSMUSG00000002831	Plin4	S3-12|mKIAA1881	perilipin 4	protein-coding	0.030000	0.592040	
mm_11726.1	chr2	36715091	36715291	+	1	NA	NA	NA	-19132	NM_146943	258945	Mm.377764	NM_146943	ENSMUSG00000111863	Olfr347	MOR136-9	olfactory receptor 347	protein-coding	0.005000	0.422886	
mm_11578.1	chr2	32924416	32924616	+	1	NA	NA	NA	36739	NM_199302	227738	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0.010000	0.592040	
mm_146906.1	chr18	31316887	31317087	-	1	NA	NA	NA	141	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding	0.035000	0.517413	
mm_74060.1	chr8	122376532	122376732	+	1	NA	NA	NA	16	NM_001029993	76014	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	0.150000	0.721393	
mm_32199.1	chr4	101420075	101420275	+	1	NA	NA	NA	472	NM_009647	11639	Mm.42040	NM_009647	ENSMUSG00000028527	Ak4	AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e	adenylate kinase 4	protein-coding	0.160000	0.786070	
mm_118999.1	chr14	28526087	28526287	+	1	NA	NA	NA	14782	NM_001256224	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.000000	0.422886	54(AACCTTTAAAGG,-,0.00),55(ACCTTTAAAGGA,-,0.00),56(CCTTTAAAGGAA,+,0.00)
mm_65905.1	chr7	30193003	30193203	-	1	NA	NA	NA	1945	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.020000	0.557214	
mm_114167.1	chr13	55471594	55471794	+	1	NA	NA	NA	6082	NR_105909	102465569		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0.105000	0.721393	
mm_96416.1	chr11	67255549	67255749	+	1	NA	NA	NA	17837	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.030000	0.507463	
mm_100718.1	chr11	3895023	3895223	-	1	NA	NA	NA	3	NM_026150	67430	Mm.347950	NM_026150	ENSMUSG00000020434	4921536K21Rik	AV043724	RIKEN cDNA 4921536K21 gene	protein-coding	0.060000	0.557214	
mm_129995.1	chr15	86185623	86185823	-	1	NA	NA	NA	418	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.170000	0.820896	
mm_61171.1	chr7	59306458	59306658	+	1	NA	NA	NA	17591	NR_015479	330544	Mm.9002	NR_015479	ENSMUSG00000100826	C230091D08Rik	-	RIKEN cDNA C230091D08 gene	ncRNA	0.010000	0.348259	
mm_145408.1	chr18	57468580	57468780	+	1	NA	NA	NA	194	NM_001134697	629147	Mm.57415	NM_001134697	ENSMUSG00000069372	Ctxn3	ENSMUSG00000069372	cortexin 3	protein-coding	0.030000	0.522388	-37(GGGTTTTAATGG,-,0.00)
mm_26097.1	chr3	136935156	136935356	+	1	NA	NA	NA	265190	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.015000	0.482587	
mm_59710.1	chr7	28735864	28736064	+	1	NA	NA	NA	5817	NM_011885	24030	Mm.358650	NM_011885	ENSMUSG00000045948	Mrps12	AI327385|Rpms12|rps12	mitochondrial ribosomal protein S12	protein-coding	0.005000	0.547264	
mm_32446.1	chr4	107314280	107314480	+	1	NA	NA	NA	17	NM_001205156	230584	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	0.060000	0.616915	-72(GCTTTAAGAGAG,+,0.00)
mm_73192.1	chr8	95411886	95412086	+	1	NA	NA	NA	22883	NM_008187	14894	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.005000	0.542289	
mm_327.1	chr1	24733703	24733903	+	1	NA	NA	NA	54885	NM_001310483	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.000000	0.308458	-96(TCTTAAATACCC,+,0.00)
mm_30746.1	chr4	14864087	14864287	+	1	NA	NA	NA	-32	NM_028264	72519	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360	transmembrane protein 55A	protein-coding	0.075000	0.726368	
mm_64140.1	chr7	141215810	141216010	+	1	NA	NA	NA	50	NM_025886	66985	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	0.100000	0.691542	
mm_121665.1	chr14	12345721	12345921	-	1	NA	NA	NA	44	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	0.105000	0.651741	
mm_1693.1	chr1	75142411	75142611	+	1	NA	NA	NA	-143	NM_026977	69171	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0.050000	0.631841	
mm_148525.1	chr19	4510384	4510584	+	1	NA	NA	NA	12	NM_001162946	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.060000	0.641791	
mm_156685.1	chrX	159372196	159372396	+	1	NA	NA	NA	101	NM_025437	66235	Mm.294623	NM_025437	ENSMUSG00000067194	Eif1ax	1500010B24Rik|AI426898|Eif1ay	eukaryotic translation initiation factor 1A, X-linked	protein-coding	0.120000	0.691542	
mm_143054.1	chr17	57004326	57004526	-	1	NA	NA	NA	-4321	NM_008954	19197	Mm.86487	NM_008954	ENSMUSG00000002664	Pspn	PSP	persephin	protein-coding	0.015000	0.601990	
mm_6773.1	chr1	84131664	84131864	-	1	NA	NA	NA	87197	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.427861	
mm_127284.1	chr15	99972816	99973016	+	1	NA	NA	NA	136	NM_001284523	207214	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	0.110000	0.701493	
mm_80113.1	chr9	70542305	70542505	+	1	NA	NA	NA	-373	NM_026337	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.080000	0.606965	
mm_167498.1	chr9	13296609	13296809	+	1	NA	NA	NA	49753	NM_025534	66396	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.045000	0.636816	
mm_72367.1	chr8	80933506	80933706	+	1	NA	NA	NA	-53087	NM_001301298	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.025000	0.502488	
mm_171348.1	chr4	109117872	109118072	-	1	NA	NA	NA	64	NM_173350	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.100000	0.771144	
mm_43467.1	chr5	136693504	136693704	+	1	NA	NA	NA	-72	NM_001303021	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.025000	0.537313	
mm_13169.1	chr2	92609499	92609699	+	1	NA	NA	NA	9892	NM_023850	76969	Mm.38021	NM_023850	ENSMUSG00000027221	Chst1	2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KSGAL6ST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding	0.000000	0.542289	
mm_166919.1	chr7	30671547	30671747	-	1	NA	NA	NA	-42	NR_027848	74927	Mm.87326	NM_183108	ENSMUSG00000049761	Pmis2	1700071L20Rik|4930479M11Rik	Pmis2, sperm specific protein	ncRNA	0.030000	0.522388	-72(CTGTCTAAAAAC,-,0.00)
mm_85075.1	chr9	91361608	91361808	-	1	NA	NA	NA	4091	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.065000	0.592040	
mm_171263.1	chr3	84889398	84889598	-	1	NA	NA	NA	25353	NM_001177774	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.000000	0.502488	
mm_127249.1	chr15	99670311	99670511	+	1	NA	NA	NA	-307	NM_009597	11419	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	0.110000	0.696517	
mm_119506.1	chr14	47381496	47381696	+	1	NA	NA	NA	7736	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.015000	0.512438	
mm_46060.1	chr5	92262685	92262885	-	1	NA	NA	NA	-9626	NM_011148	19023	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	0.030000	0.517413	
mm_143963.1	chr17	87100957	87101157	-	1	NA	NA	NA	-6622	NM_019654	56468	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0.010000	0.398010	
mm_134544.1	chr16	19883694	19883894	-	1	NA	NA	NA	480	NR_027896	68162	Mm.35159	NR_015488		A930003A15Rik	AI853191	RIKEN cDNA A930003A15 gene	ncRNA	0.020000	0.542289	
mm_110557.1	chr12	55491608	55491808	-	1	NA	NA	NA	939	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.030000	0.587065	
mm_15274.1	chr2	155236464	155236664	+	1	NA	NA	NA	31	NM_025947	67068	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	0.095000	0.651741	
mm_46302.1	chr5	100500508	100500708	-	1	NA	NA	NA	31	NM_172714	231506	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0.175000	0.791045	
mm_123140.1	chr14	56667930	56668130	-	1	NA	NA	NA	-218	NM_023773	75339	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	0.065000	0.631841	
mm_135435.1	chr16	45382869	45383069	-	1	NA	NA	NA	26084	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.005000	0.422886	
mm_25216.1	chr3	103846798	103846998	+	1	NA	NA	NA	-12897	NR_104070	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.020000	0.447761	
mm_170552.1	chr1	94150734	94150934	+	1	NA	NA	NA	-98281	NM_008798	18566	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0.045000	0.582090	
mm_77816.1	chr9	3199848	3200048	+	1	NA	NA	NA	-135	NR_027988	114673	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0.060000	0.626866	
mm_12649.1	chr2	74745589	74745789	+	1	NA	NA	NA	-6995	NR_110447	102634401	Mm.235021	NR_110447	ENSMUSG00000085015	LOC102634401	-	uncharacterized LOC102634401	ncRNA	0.005000	0.582090	
mm_35152.1	chr4	12087754	12087954	-	1	NA	NA	NA	103	NM_177861	329795	Mm.475125	NM_177861	ENSMUSG00000049488	Tmem67	5330408M12Rik|B230117O07|b2b1163.1Clo|b2b1291.1Clo	transmembrane protein 67	protein-coding	0.065000	0.572139	
mm_165051.1	chr19	40740845	40741045	-	1	NA	NA	NA	81175	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.005000	0.388060	
mm_170590.1	chr19	5800764	5800964	-	1	NA	NA	NA	1808	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.427861	
mm_158551.1	chrX	145602227	145602427	-	1	NA	NA	NA	-114688	NM_153319	27494	Mm.100068	NM_153319	ENSMUSG00000041688	Amot	CAG-2|D0Kist1|Sii6	angiomotin	protein-coding	0.020000	0.432836	
mm_73504.1	chr8	107324834	107325034	+	1	NA	NA	NA	31464	NM_133957	54446	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0.015000	0.308458	
mm_21069.1	chr2	152825658	152825858	-	1	NA	NA	NA	4959	NM_001289716	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.000000	0.462687	-35(GGCTCTTAAAAC,-,0.00)
mm_110494.1	chr12	54141817	54142017	-	1	NA	NA	NA	61957	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	0.005000	0.452736	
mm_154429.1	chrM	476	676	-	1	NA	NA	NA	NA	NA									0.015000	0.393035	
mm_81276.1	chr9	108263977	108264177	+	1	NA	NA	NA	-119	NM_001276486	13138	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	0.070000	0.656716	
mm_70804.1	chr8	22974764	22974964	+	1	NA	NA	NA	28	NM_001277280	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.195000	0.870647	
mm_121554.1	chr14	122479318	122479518	+	1	NA	NA	NA	4034	NM_009574	22772	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0.010000	0.253731	
mm_29397.1	chr3	108904460	108904660	-	1	NA	NA	NA	7144	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.070000	0.527363	
mm_22130.1	chr2	170406410	170406610	-	1	NA	NA	NA	21335	NM_001164369	76960	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	0.035000	0.626866	
mm_32745.1	chr4	116651422	116651622	+	1	NA	NA	NA	152	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.065000	0.641791	
mm_5016.1	chr1	192892778	192892978	+	1	NA	NA	NA	-37126	NM_198247	214791	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	0.010000	0.412935	
mm_62567.1	chr7	104219307	104219507	+	1	NA	NA	NA	612	NM_001013616	94088	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	0.050000	0.606965	
mm_55868.1	chr6	83459009	83459209	-	1	NA	NA	NA	-2717	NM_001347313	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.015000	0.497512	-34(GAGTATATAAGC,-,0.00)
mm_51086.1	chr6	67036558	67036758	+	1	NA	NA	NA	59	NR_040278	320172	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0.095000	0.671642	
mm_32180.1	chr4	100819347	100819547	+	1	NA	NA	NA	42768	NM_198037	320508	Mm.151962	NM_198037	ENSMUSG00000028532	Cachd1	1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573	cache domain containing 1	protein-coding	0.010000	0.502488	
mm_17585.1	chr2	30415571	30415771	-	1	NA	NA	NA	77	NM_007760	12908	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.110000	0.691542	
mm_83647.1	chr9	49505346	49505546	-	1	NA	NA	NA	-12842	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.025000	0.512438	
mm_33502.1	chr4	130826122	130826322	+	1	NA	NA	NA	33685	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.015000	0.427861	
mm_167946.1	chrX	137537517	137537717	-	1	NA	NA	NA	-33137	NM_030688	60367	Mm.328321	NM_030688	ENSMUSG00000059203	Il1rapl2	-	interleukin 1 receptor accessory protein-like 2	protein-coding	0.000000	0.338308	
mm_114925.1	chr13	95531819	95532019	+	1	NA	NA	NA	-6679	NM_007974	14063	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	0.010000	0.542289	
mm_158426.1	chrX	139796285	139796485	-	1	NA	NA	NA	-4423	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.015000	0.447761	
mm_44147.1	chr5	150259829	150260029	+	1	NA	NA	NA	-1	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.030000	0.646766	
mm_11167.1	chr2	28557897	28558097	+	1	NA	NA	NA	5406	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.040000	0.532338	
mm_132021.1	chr16	26463372	26463572	+	1	NA	NA	NA	337	NM_053241	114141	Mm.275205	NM_053241	ENSMUSG00000038148	Cldn16	PCLN1|claudin-16	claudin 16	protein-coding	0.020000	0.532338	
mm_78785.1	chr9	44032076	44032276	+	1	NA	NA	NA	-11208	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.010000	0.472637	
mm_56739.1	chr6	115762263	115762463	-	1	NA	NA	NA	103	NM_001168256	94346	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0.015000	0.532338	
mm_17292.1	chr2	26206458	26206658	-	1	NA	NA	NA	17	NM_001039653	16871	Mm.386765	NM_010711	ENSMUSG00000026934	Lhx3	Lim3|P-LIM|mLIM3|mLim-3	LIM homeobox protein 3	protein-coding	0.120000	0.776119	
mm_42394.1	chr5	114937295	114937495	+	1	NA	NA	NA	-4807	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.020000	0.542289	
mm_118220.1	chr13	110357066	110357266	-	1	NA	NA	NA	6	NM_177713	238875	Mm.30533	NM_177713	ENSMUSG00000046006	Gapt	9830130M13Rik	Grb2-binding adaptor, transmembrane	protein-coding	0.000000	0.402985	
mm_3417.1	chr1	144967519	144967719	+	1	NA	NA	NA	-192198	NM_022881	64214	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	0.000000	0.477612	
mm_118786.1	chr14	24104085	24104285	+	1	NA	NA	NA	15308	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.005000	0.398010	
mm_155829.1	chrX	100730034	100730234	+	1	NA	NA	NA	-52	NM_001305941	71584	Mm.283495	NM_023608	ENSMUSG00000019359	Gdpd2	9130017L10Rik|Gde3|Obdpf	glycerophosphodiester phosphodiesterase domain containing 2	protein-coding	0.025000	0.611940	
mm_14496.1	chr2	131950920	131951120	+	1	NA	NA	NA	-17	NM_001278520	26434	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion protein dublet	protein-coding	0.015000	0.557214	
mm_75526.1	chr8	57306329	57306529	-	1	NA	NA	NA	14430	NR_110474	102636514		NR_110474	ENSMUSG00000100510	Uph	-	upperhand	ncRNA	0.005000	0.482587	
mm_160439.1	chr8	95110276	95110476	-	1	NA	NA	NA	2966	NM_001145832	16582	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.010000	0.522388	
mm_2339.1	chr1	92848618	92848818	+	1	NA	NA	NA	-1660	NR_029559	387167		NR_029559	ENSMUSG00000065470	Mir149	Mirn149|mir-149|mmu-mir-149	microRNA 149	ncRNA	0.070000	0.681592	
mm_125700.1	chr15	66909195	66909395	+	1	NA	NA	NA	17902	NM_018865	22402	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0.010000	0.552239	
mm_156447.1	chrX	142681792	142681992	+	1	NA	NA	NA	166	NM_001199360	209497	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	0.070000	0.711443	
mm_87812.1	chr10	60301829	60302029	+	1	NA	NA	NA	17468	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.015000	0.572139	
mm_88263.1	chr10	73845250	73845450	+	1	NA	NA	NA	23483	NM_001142735	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0.015000	0.363184	
mm_47122.1	chr5	119691161	119691361	-	1	NA	NA	NA	-43	NR_040416	433944	Mm.491053	NR_040416	ENSMUSG00000086847	Tbx3os2	Gm16065|OTTMUSG00000029666	T-box 3, opposite strand 2	ncRNA	0.055000	0.562189	
mm_46071.1	chr5	92322718	92322918	-	1	NA	NA	NA	5261	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.005000	0.388060	
mm_27309.1	chr3	50366422	50366622	-	1	NA	NA	NA	77091	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.338308	
mm_141951.1	chr17	35085512	35085712	-	1	NA	NA	NA	-17	NM_001163192	433099	Mm.328993	NM_001163192	ENSMUSG00000034923	Ly6g6f	CJ068215	lymphocyte antigen 6 complex, locus G6F	protein-coding	0.000000	0.522388	
mm_100453.1	chr11	119680912	119681112	+	1	NA	NA	NA	78107	NM_028898	74370	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	0.010000	0.547264	
mm_173361.1	chrY	90819434	90819634	+	1	NA	NA	NA	19872	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.497512	
mm_153925.1	chr19	47314724	47314924	-	1	NA	NA	NA	-41235	NR_105961	102466782		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.030000	0.557214	-8(TTCTATTTAAGG,-,0.00)
mm_144599.1	chr18	32377206	32377406	+	1	NA	NA	NA	89	NM_009668	30948	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0.130000	0.741294	
mm_151735.1	chr19	4926861	4927061	-	1	NA	NA	NA	1326	NM_133803	75221	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324	dipeptidylpeptidase 3	protein-coding	0.015000	0.592040	
mm_86793.1	chr10	20208341	20208541	+	1	NA	NA	NA	2	NM_001101561	621697	Mm.440587	NM_001101561		Rpl32l	EG621697|Gm6251	ribosomal protein L32-like	protein-coding	0.020000	0.452736	
mm_87977.1	chr10	63655091	63655291	+	1	NA	NA	NA	-165864	NM_001164519	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.005000	0.398010	
mm_68163.1	chr7	103812461	103812661	-	1	NA	NA	NA	1362	NM_016956	15130	Mm.288567	NM_016956		Hbb-b2	AI036344|Hbb2|Hbbt2|beta2	hemoglobin, beta adult minor chain	protein-coding	0.000000	0.328358	
mm_3473.1	chr1	150104872	150105072	+	1	NA	NA	NA	4941	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.015000	0.457711	
mm_52883.1	chr6	122513556	122513756	+	1	NA	NA	NA	-20	NM_015776	50530	Mm.41931	NM_015776	ENSMUSG00000030116	Mfap5	MAGP-2|MFAP-5	microfibrillar associated protein 5	protein-coding	0.020000	0.497512	
mm_101672.1	chr11	37236065	37236265	-	1	NA	NA	NA	-291924	NM_011856	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.070000	0.636816	
mm_115806.1	chr13	19358243	19358443	-	1	NA	NA	NA	37470	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.537313	
mm_9682.1	chr1	178332933	178333133	-	1	NA	NA	NA	4751	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.010000	0.378109	
mm_38438.1	chr4	139622550	139622750	-	1	NA	NA	NA	-244	NM_175438	212647	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	0.050000	0.666667	
mm_152155.1	chr19	7241081	7241281	-	1	NA	NA	NA	41	NM_027643	70999	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	0.165000	0.721393	
mm_172567.1	chr8	111310136	111310336	-	1	NA	NA	NA	-10014	NM_146218	234736	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	0.060000	0.552239	
mm_18872.1	chr2	76214937	76215137	-	1	NA	NA	NA	123616	NM_001081033	241489	Mm.246613	NM_001081033	ENSMUSG00000075270	Pde11a	6330414F14Rik|A630086N24Rik|Gm350|PDE11A1	phosphodiesterase 11A	protein-coding	0.010000	0.378109	
mm_132238.1	chr16	32750598	32750798	+	1	NA	NA	NA	14812	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.005000	0.452736	
mm_54030.1	chr6	12315172	12315372	-	1	NA	NA	NA	-205692	NR_003631	625347	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo	0.010000	0.363184	
mm_53060.1	chr6	124830101	124830301	+	1	NA	NA	NA	25	NM_013538	14793	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	0.045000	0.542289	
mm_73007.1	chr8	93810899	93811099	+	1	NA	NA	NA	161	NM_001113384	14681	Mm.251445	NM_010308	ENSMUSG00000031748	Gnao1	AW050213|Galphao|Gnao|alphaO	guanine nucleotide binding protein, alpha O	protein-coding	0.100000	0.716418	
mm_43277.1	chr5	130836666	130836866	+	1	NA	NA	NA	387974	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.000000	0.442786	
mm_150543.1	chr19	39315384	39315584	+	1	NA	NA	NA	28399	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.005000	0.363184	
mm_923.1	chr1	55131224	55131424	+	1	NA	NA	NA	79	NM_025283	19070	Mm.291037	NM_025283	ENSMUSG00000025979	Mob4	2610109B12Rik|Mobkl3|Phocn|Prei3	MOB family member 4, phocein	protein-coding	0.095000	0.716418	
mm_129497.1	chr15	78850886	78851086	-	1	NA	NA	NA	4543	NM_025622	107753	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	0.005000	0.562189	54(GCCTTTAGGGTC,+,0.00)
mm_125138.1	chr15	30496705	30496905	+	1	NA	NA	NA	324212	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.005000	0.303483	
mm_81909.1	chr9	120012960	120013160	+	1	NA	NA	NA	10538	NM_011724	22437	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.010000	0.482587	
mm_151861.1	chr19	5797163	5797363	-	1	NA	NA	NA	-1282	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.005000	0.402985	
mm_15719.1	chr2	164074010	164074210	+	1	NA	NA	NA	-68	NM_021420	58231	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.100000	0.696517	
mm_54268.1	chr6	28831859	28832059	-	1	NA	NA	NA	-212	NM_138682	192198	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.020000	0.537313	
mm_23875.1	chr3	83030151	83030351	+	1	NA	NA	NA	4098	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.030000	0.492537	
mm_124322.1	chr14	103651280	103651480	-	1	NA	NA	NA	1137	NM_198014	105439	Mm.27548	NM_198014	ENSMUSG00000055717	Slain1	9630044O09Rik|AA675320|AW742596	SLAIN motif family, member 1	protein-coding	0.030000	0.442786	-89(CCTTTAATAATC,+,0.00)
mm_121867.1	chr14	20734239	20734439	-	1	NA	NA	NA	223	NM_010811	17423	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0.165000	0.796020	
mm_767.1	chr1	44119385	44119585	+	1	NA	NA	NA	-483	NM_144558	246229	Mm.386883	NM_144558	ENSMUSG00000041684	Bivm	AI854267	basic, immunoglobulin-like variable motif containing	protein-coding	0.065000	0.651741	
mm_45095.1	chr5	44226560	44226760	-	1	NA	NA	NA	-54	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.175000	0.820896	
mm_29130.1	chr3	105687339	105687539	-	1	NA	NA	NA	132	NM_017397	53975	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	0.110000	0.646766	
mm_161080.1	chr12	83688450	83688650	+	1	NA	NA	NA	-13	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.070000	0.651741	
mm_93940.1	chr10	127191450	127191650	-	1	NA	NA	NA	-1496	NM_028027	52666	Mm.272230	NM_028027	ENSMUSG00000019467	Arhgef25	2410008H17Rik|D10Ertd610e|GEFT	Rho guanine nucleotide exchange factor (GEF) 25	protein-coding	0.035000	0.626866	
mm_79400.1	chr9	54950745	54950945	+	1	NA	NA	NA	-14	NM_011966	26441	Mm.30270	NM_011966	ENSMUSG00000032301	Psma4	C9	proteasome (prosome, macropain) subunit, alpha type 4	protein-coding	0.095000	0.661692	70(TCCTTTAGGGGC,+,0.00)
mm_16877.1	chr2	12419338	12419538	-	1	NA	NA	NA	22	NM_024185	66960	Mm.34059	NM_024185	ENSMUSG00000026767	Fam188a	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958	family with sequence similarity 188, member A	protein-coding	0.100000	0.646766	
mm_130354.1	chr15	97766962	97767162	-	1	NA	NA	NA	604	NM_001177810	223864	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.040000	0.671642	
mm_157784.1	chrX	73824314	73824514	-	1	NA	NA	NA	555	NM_001029868	245469	Mm.103782	NM_001029868	ENSMUSG00000002006	Pdzd4	B230341P03|D130075J17Rik|Kiaa1444-hp|LU1|PDZRN4L|Pdzk4|Pdzrnk4l|Xlu	PDZ domain containing 4	protein-coding	0.060000	0.671642	
mm_125479.1	chr15	54571389	54571589	+	1	NA	NA	NA	123	NM_178920	105853	Mm.410994	NM_178920	ENSMUSG00000024479	Mal2	AI461653	mal, T cell differentiation protein 2	protein-coding	0.175000	0.805970	
mm_25899.1	chr3	131111106	131111306	+	1	NA	NA	NA	909	NM_001276402	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.115000	0.711443	
mm_157488.1	chrX	48256566	48256766	-	1	NA	NA	NA	-268	NM_028276	72554	Mm.336045	NM_028276	ENSMUSG00000063785	Utp14a	2700066J21Rik|JsdX|NY-CO-16|SDCCAG16|T25628|mKIAA0266	UTP14A small subunit processome component	protein-coding	0.055000	0.552239	
mm_120057.1	chr14	56674525	56674725	+	1	NA	NA	NA	6377	NM_023773	75339	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	0.005000	0.427861	
mm_108549.1	chr12	84409045	84409245	+	1	NA	NA	NA	77	NM_028377	72873	Mm.440428	NM_028377	ENSMUSG00000057265	Bbof1	2900006K08Rik|AI427784|Ccdc176	basal body orientation factor 1	protein-coding	0.095000	0.616915	
mm_78077.1	chr9	15709632	15709832	+	1	NA	NA	NA	-37	NM_172289	234967	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.155000	0.781095	
mm_18597.1	chr2	66784836	66785036	-	1	NA	NA	NA	-26	NM_009135	20272	Mm.38127	NM_009135	ENSMUSG00000034810	Scn7a	1110034K09Rik|AI642000|NaG|Nav2|Nav2.3|Nax|Scn6a	sodium channel, voltage-gated, type VII, alpha	protein-coding	0.015000	0.557214	
mm_160952.1	chr11	97699210	97699410	-	1	NA	NA	NA	74	NM_001163307	22658	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	0.065000	0.597015	
mm_89559.1	chr10	95318362	95318562	+	1	NA	NA	NA	5247	NM_001330138	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.020000	0.626866	
mm_104489.1	chr11	95831712	95831912	-	1	NA	NA	NA	7312	NM_153104	237928	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.035000	0.601990	
mm_15910.1	chr2	165059198	165059398	+	1	NA	NA	NA	3662	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.010000	0.457711	
mm_10679.1	chr2	21508984	21509184	+	1	NA	NA	NA	141517	NM_001004761	241263	Mm.166647	NM_175706	ENSMUSG00000045967	Gpr158	5330427M13Rik|mKIAA1136	G protein-coupled receptor 158	protein-coding	0.000000	0.318408	
mm_149066.1	chr19	8841122	8841322	+	1	NA	NA	NA	719	NM_001290823	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.025000	0.631841	
mm_141003.1	chr17	24936886	24937086	-	1	NA	NA	NA	-9	NM_013931	30957	Mm.43081	NM_013931	ENSMUSG00000024163	Mapk8ip3	BB120594|D17Wsu15e|JIP-3|JSAP1|JSAP1a|JSAP1b|JSAP1c|JSAP1d|Jip3|Syd2|mKIAA1066	mitogen-activated protein kinase 8 interacting protein 3	protein-coding	0.115000	0.701493	
mm_33258.1	chr4	127169081	127169281	+	1	NA	NA	NA	-23	NM_198618	242667	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	discs, large (Drosophila) homolog-associated protein 3	protein-coding	0.160000	0.830846	
mm_41326.1	chr5	90474520	90474720	+	1	NA	NA	NA	13750	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.502488	
mm_116328.1	chr13	38031848	38032048	-	1	NA	NA	NA	4989	NM_027724	71213	Mm.314688	NM_027724	ENSMUSG00000044566	Cage1	4933427I01Rik|Ctag3	cancer antigen 1	protein-coding	0.015000	0.507463	-28(GGTTCTAAAAGA,-,0.00)
mm_36798.1	chr4	103120116	103120316	-	1	NA	NA	NA	826	NM_001039081	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.010000	0.462687	
mm_15519.1	chr2	158324491	158324691	+	1	NA	NA	NA	18098	NM_008489	16803	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	0.035000	0.542289	
mm_151481.1	chr19	58676157	58676357	+	1	NA	NA	NA	5892	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.040000	0.542289	
mm_4379.1	chr1	172148043	172148243	+	1	NA	NA	NA	128	NM_153555	98193	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	0.125000	0.711443	
mm_77810.1	chr9	3037243	3037443	+	1	NA	NA	NA	1400	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.020000	0.373134	
mm_166826.1	chr7	18524679	18524879	-	1	NA	NA	NA	7448	NM_054060	114868	Mm.389809	NM_054060	ENSMUSG00000070798	Psg25	cea13	pregnancy-specific glycoprotein 25	protein-coding	0.025000	0.477612	
mm_21551.1	chr2	164071035	164071235	-	1	NA	NA	NA	-33	NM_025996	67145	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	0.065000	0.666667	-1(GGGCCTTAAAGG,-,0.00),0(GGCCTTAAAGGC,-,0.00),2(CCTTAAAGGCAC,+,0.00)
mm_14773.1	chr2	145786230	145786430	+	1	NA	NA	NA	214	NM_028724	74030	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.025000	0.497512	
mm_10392.1	chr2	13480986	13481186	+	1	NA	NA	NA	10790	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.000000	0.378109	
mm_144703.1	chr18	34863154	34863354	+	1	NA	NA	NA	2047	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.070000	0.582090	
mm_144580.1	chr18	31931179	31931379	+	1	NA	NA	NA	-228	NM_144862	225341	Mm.24551	NM_144862	ENSMUSG00000024395	Lims2	PINCH2	LIM and senescent cell antigen like domains 2	protein-coding	0.045000	0.537313	-44(TCCCTTTAAAAG,-,0.00),-43(CCCTTTAAAAGG,+,0.00),-43(CCCTTTAAAAGG,-,0.00),-42(CCTTTAAAAGGA,+,0.00)
mm_113044.1	chr13	23575663	23575863	+	1	NA	NA	NA	0	NM_178204	319149	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	0.065000	0.487562	
mm_33437.1	chr4	130107515	130107715	+	1	NA	NA	NA	59	NM_026441	67898	Mm.20818	NM_026441	ENSMUSG00000028779	Pef1	2600002E23Rik|Peflin	penta-EF hand domain containing 1	protein-coding	0.050000	0.547264	
mm_25963.1	chr3	132684075	132684275	+	1	NA	NA	NA	31	NM_001163455	271981	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0.130000	0.736318	
mm_87649.1	chr10	58418334	58418534	+	1	NA	NA	NA	24061	NM_001346676	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.010000	0.497512	
mm_114735.1	chr13	83731286	83731486	+	1	NA	NA	NA	3280	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.090000	0.671642	
mm_9891.1	chr1	186704908	186705108	-	1	NA	NA	NA	981	NM_009367	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.030000	0.437811	53(CTTTTTTAAAGG,-,0.00),54(TTTTTTAAAGGA,+,0.00)
mm_4218.1	chr1	171329290	171329490	+	1	NA	NA	NA	245	NM_011615	21945	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	0.145000	0.776119	
mm_21561.1	chr2	164182577	164182777	-	1	NA	NA	NA	65	NM_145369	209232	Mm.218273	NM_145369	ENSMUSG00000040154	Wfdc5	BC019734|Prg5|Wap1	WAP four-disulfide core domain 5	protein-coding	0.005000	0.522388	
mm_110666.1	chr12	64474798	64474998	-	1	NA	NA	NA	0	NM_001163271	623046	Mm.189552	NM_001163271	ENSMUSG00000043060	Fscb	EG623046	fibrous sheath CABYR binding protein	protein-coding	0.000000	0.358209	
mm_37043.1	chr4	115780997	115781197	-	1	NA	NA	NA	-63	NM_029196	75173	Mm.331798	NM_029196	ENSMUSG00000044556	Tex38	4930544O15Rik|Theg4	testis expressed 38	protein-coding	0.010000	0.517413	
mm_132933.1	chr16	49855025	49855225	+	1	NA	NA	NA	-529	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.025000	0.572139	
mm_101494.1	chr11	31821197	31821397	-	1	NA	NA	NA	3250	NR_102310	414116	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.000000	0.457711	45(TTCTTTATAAAG,-,0.00),47(CTTTATAAAGTA,+,0.00)
mm_131537.1	chr16	17759506	17759706	+	1	NA	NA	NA	-15	NM_145479	224023	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	0.090000	0.716418	
mm_98307.1	chr11	90033449	90033649	+	1	NA	NA	NA	3201	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.005000	0.537313	
mm_148732.1	chr19	5878047	5878247	+	1	NA	NA	NA	-319	NM_134154	107375	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0.015000	0.567164	
mm_120090.1	chr14	57878319	57878519	+	1	NA	NA	NA	11843	NM_029492	75965	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|ENSMUSG00000055956|HK11	zinc finger, DHHC domain containing 20	protein-coding	0.005000	0.313433	
mm_9724.1	chr1	180193384	180193584	-	1	NA	NA	NA	1	NM_001163290	67426	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0.010000	0.477612	-35(GCCTTTAAGGAC,+,0.00)
mm_21744.1	chr2	164804610	164804810	-	1	NA	NA	NA	171	NM_133240	170789	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	0.090000	0.606965	
mm_145801.1	chr18	65352309	65352509	+	1	NA	NA	NA	41479	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.005000	0.388060	
mm_163119.1	chr11	75630708	75630908	+	1	NA	NA	NA	-212	NM_008916	19062	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.115000	0.701493	
mm_56661.1	chr6	113501813	113502013	-	1	NA	NA	NA	18	NM_001289699	210673	Mm.133060	NM_172487	ENSMUSG00000045009	Prrt3	6330505P20|B230206N24Rik	proline-rich transmembrane protein 3	protein-coding	0.095000	0.676617	
mm_106532.1	chr11	120573216	120573416	-	1	NA	NA	NA	-380	NM_011032	18453	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.110000	0.671642	
mm_46875.1	chr5	113832628	113832828	-	1	NA	NA	NA	-2227	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.015000	0.557214	41(GCTTTAAGGCCC,+,0.00)
mm_149246.1	chr19	10206370	10206570	+	1	NA	NA	NA	437	NM_001163431	69038	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	0.025000	0.522388	
mm_148070.1	chr18	72349764	72349964	-	1	NA	NA	NA	1205	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.025000	0.452736	
mm_145245.1	chr18	51117660	51117860	+	1	NA	NA	NA	-138	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0.155000	0.791045	
mm_146783.1	chr18	20105884	20106084	-	1	NA	NA	NA	8789	NM_001291804	13505	Mm.33740	NM_013504	ENSMUSG00000044322	Dsc1	1110020A10Rik|AI507491	desmocollin 1	protein-coding	0.000000	0.373134	
mm_33244.1	chr4	127030073	127030273	+	1	NA	NA	NA	8872	NM_023603	71514	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|OTTMUSG00000009329|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.010000	0.303483	
mm_152934.1	chr19	28560975	28561175	-	1	NA	NA	NA	-117149	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.005000	0.502488	
mm_5226.1	chr1	14309713	14309913	-	1	NA	NA	NA	386	NM_001310459	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.105000	0.711443	
mm_107991.1	chr12	73261405	73261605	+	1	NA	NA	NA	25206	NM_029580	76357	Mm.311344	NM_029580	ENSMUSG00000034442	Trmt5	2610027O18Rik|mKIAA1393	TRM5 tRNA methyltransferase 5	protein-coding	0.005000	0.333333	
mm_62627.1	chr7	107594946	107595146	+	1	NA	NA	NA	-5	NM_008905	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.050000	0.696517	
mm_56188.1	chr6	88518646	88518846	-	1	NA	NA	NA	54	NM_016906	53421	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0.140000	0.731343	
mm_129969.1	chr15	85711509	85711709	-	1	NA	NA	NA	4290	NR_029727	387245		NR_029727	ENSMUSG00000065564	Mirlet7b	Mirnlet7b|let-7b|mmu-let-7b	microRNA let7b	ncRNA	0.015000	0.532338	
mm_132914.1	chr16	49057306	49057506	+	1	NA	NA	NA	-80	NM_001166210	667772	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0.005000	0.383085	
mm_171186.1	chr3	40893943	40894143	-	1	NA	NA	NA	-234	NM_026622	269423	Mm.32373	NM_026622	ENSMUSG00000037818	Abhd18	2310068E01Rik|3110057O12Rik|AI645591	abhydrolase domain containing 18	protein-coding	0.100000	0.666667	
mm_55612.1	chr6	72042439	72042639	-	1	NA	NA	NA	-11	NR_046180	330350	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0.015000	0.472637	
mm_13067.1	chr2	91118816	91119016	+	1	NA	NA	NA	772	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.005000	0.532338	31(TCTTATATGGTG,+,0.00)
mm_45451.1	chr5	67619323	67619523	-	1	NA	NA	NA	11540	NM_001033415	330096	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.005000	0.328358	
mm_27310.1	chr3	50366435	50366635	-	1	NA	NA	NA	77078	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.328358	
mm_33361.1	chr4	129491106	129491306	+	1	NA	NA	NA	16	NM_001085491	68233	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0.075000	0.661692	
mm_117642.1	chr13	92530695	92530895	-	1	NA	NA	NA	15	NM_173392	218441	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	0.110000	0.676617	
mm_55557.1	chr6	71322119	71322319	-	1	NA	NA	NA	-593	NM_009858	12526	Mm.333148	NM_009858	ENSMUSG00000053044	Cd8b1	Cd8b|Ly-3|Ly-C|Lyt-3	CD8 antigen, beta chain 1	protein-coding	0.005000	0.527363	
mm_35848.1	chr4	48468705	48468905	-	1	NA	NA	NA	4617	NM_172304	269536	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0.010000	0.398010	
mm_99474.1	chr11	102436427	102436627	+	1	NA	NA	NA	6205	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.030000	0.572139	
mm_101286.1	chr11	21683989	21684189	-	1	NA	NA	NA	111808	NM_145425	216560	Mm.138090	NM_145425	ENSMUSG00000020319	Wdpcp	AV249152	WD repeat containing planar cell polarity effector	protein-coding	0.040000	0.537313	
mm_26392.1	chr3	142572631	142572831	+	1	NA	NA	NA	12235	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.010000	0.358209	
mm_18351.1	chr2	58160558	58160758	-	1	NA	NA	NA	-536	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.030000	0.437811	-33(TCTTATAAAGCT,+,0.00),5(CGGCATAAAGGC,-,0.00)
mm_71032.1	chr8	33600541	33600741	+	1	NA	NA	NA	1020	NM_017374	19053	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	0.025000	0.348259	
mm_52408.1	chr6	113388947	113389147	+	1	NA	NA	NA	-213	NM_001142732	101100	Mm.388573	NM_133923	ENSMUSG00000030276	Ttll3	4833441J24Rik|AI450050	tubulin tyrosine ligase-like family, member 3	protein-coding	0.010000	0.432836	
mm_172107.1	chr6	3200694	3200894	+	1	NA	NA	NA	-87725	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.060000	0.582090	
mm_45420.1	chr5	66543821	66544021	-	1	NA	NA	NA	74896	NM_009686	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.010000	0.417910	85(GGCTTTAAAAAT,-,0.00)
mm_15161.1	chr2	154009719	154009919	+	1	NA	NA	NA	1543	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.010000	0.447761	
mm_46691.1	chr5	110086204	110086404	-	1	NA	NA	NA	-13665	NM_207279	403178	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0.030000	0.547264	-30(GCTTAAATGGAC,+,0.00)
mm_101759.1	chr11	43426125	43426325	-	1	NA	NA	NA	23	NM_001131054	30939	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	0.070000	0.616915	
mm_167882.1	chrX	48010324	48010524	+	1	NA	NA	NA	24429	NM_013912	30878	Mm.29262	NM_013912	ENSMUSG00000037010	Apln	6030430G11Rik|Apel	apelin	protein-coding	0.015000	0.393035	
mm_163275.1	chr11	115699180	115699380	-	1	NA	NA	NA	254	NM_001313937	14784	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.020000	0.532338	
mm_16494.1	chr2	181187297	181187497	+	1	NA	NA	NA	54	NM_025598	66496	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0.090000	0.616915	
mm_86119.1	chr9	116089457	116089657	-	1	NA	NA	NA	85806	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.010000	0.422886	
mm_151314.1	chr19	55837730	55837930	+	1	NA	NA	NA	-57491	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.020000	0.442786	
mm_32537.1	chr4	109000960	109001160	+	1	NA	NA	NA	255	NM_146150	230598	Mm.274950	NM_146150	ENSMUSG00000053510	Nrd1	2600011I06Rik|AI875733|NRD-C|Nrdc	nardilysin, N-arginine dibasic convertase, NRD convertase 1	protein-coding	0.055000	0.587065	
mm_98216.1	chr11	87853128	87853328	+	1	NA	NA	NA	3	NM_001039684	380718	Mm.24404	NM_001039684	ENSMUSG00000034121	Mks1	AK190930|B8d3	Meckel syndrome, type 1	protein-coding	0.130000	0.701493	
mm_36446.1	chr4	82474968	82475168	-	1	NA	NA	NA	30711	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.005000	0.268657	-62(ACTTAAAAAGGC,+,0.00)
mm_14685.1	chr2	140170571	140170771	+	1	NA	NA	NA	25	NM_027093	69487	Mm.287921	NM_027093	ENSMUSG00000027384	Ndufaf5	2310003L22Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding	0.100000	0.616915	
mm_95830.1	chr11	55469633	55469833	+	1	NA	NA	NA	-19	NM_013716	27041	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0.140000	0.736318	
mm_137419.1	chr17	26138615	26138815	+	1	NA	NA	NA	29	NM_001159598	12005	Mm.23684	NM_009733	ENSMUSG00000024182	Axin1	AI316800|Axin|Fu|Kb|Ki|fused|kinky|knobbly	axin 1	protein-coding	0.100000	0.751244	
mm_11711.1	chr2	36230570	36230770	+	1	NA	NA	NA	244	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.060000	0.651741	
mm_146377.1	chr18	82584927	82585127	+	1	NA	NA	NA	30519	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.025000	0.562189	
mm_157124.1	chrX	9445978	9446178	-	1	NA	NA	NA	23246	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.293532	
mm_67962.1	chr7	100539494	100539694	-	1	NA	NA	NA	2494	NM_183270	68185	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	0.010000	0.432836	
mm_2417.1	chr1	94075071	94075271	+	1	NA	NA	NA	-22618	NM_008798	18566	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0.005000	0.417910	
mm_101266.1	chr11	21239242	21239442	-	1	NA	NA	NA	310	NM_001290628	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.160000	0.805970	
mm_134523.1	chr16	19236160	19236360	-	1	NA	NA	NA	50481	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.000000	0.318408	
mm_68458.1	chr7	110122915	110123115	-	1	NA	NA	NA	956	NM_009516	22390	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.080000	0.611940	46(TTTTTTAAAGGC,+,0.00),47(TTTTTAAAGGCC,+,0.00)
mm_163091.1	chr11	69734624	69734824	-	1	NA	NA	NA	23909	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.005000	0.517413	
mm_41383.1	chr5	90744319	90744519	+	1	NA	NA	NA	-14879	NM_009141	20311	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0.005000	0.432836	
mm_67337.1	chr7	79792967	79793167	-	1	NA	NA	NA	523	NM_008588	17292	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0.115000	0.706468	
mm_107971.1	chr12	72792194	72792394	+	1	NA	NA	NA	31083	NM_008910	19042	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.015000	0.512438	
mm_165553.1	chr3	13472552	13472752	+	1	NA	NA	NA	997	NM_001163328	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.015000	0.333333	
mm_117739.1	chr13	95671461	95671661	-	1	NA	NA	NA	-25359	NM_010170	14064	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	0.005000	0.402985	
mm_38576.1	chr4	141817818	141818018	-	1	NA	NA	NA	8087	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.040000	0.597015	
mm_108860.1	chr12	98770957	98771157	+	1	NA	NA	NA	35	NM_001160108	75553	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.000000	0.383085	
mm_106933.1	chr12	8637184	8637384	+	1	NA	NA	NA	-36850	NM_001160221	80913	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.035000	0.452736	
mm_54614.1	chr6	38354456	38354656	-	1	NA	NA	NA	47	NM_028864	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.075000	0.651741	
mm_51056.1	chr6	65631851	65632051	+	1	NA	NA	NA	-39660	NM_172399	68169	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding	0.005000	0.373134	
mm_160920.1	chr11	84195504	84195704	+	1	NA	NA	NA	166	NM_133360	107476	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding	0.010000	0.492537	
mm_99683.1	chr11	106033493	106033693	+	1	NA	NA	NA	-3279	NM_027946	71833	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.025000	0.492537	
mm_145839.1	chr18	65445471	65445671	+	1	NA	NA	NA	14574	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.427861	
mm_118561.1	chr14	17981772	17981972	+	1	NA	NA	NA	228	NM_009380	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.030000	0.502488	
mm_2349.1	chr1	92910664	92910864	+	1	NA	NA	NA	0	NR_138578	75995	Mm.46179	NR_138577	ENSMUSG00000097251	5033417F24Rik	6330419D11Rik	RIKEN cDNA 5033417F24 gene	ncRNA	0.180000	0.820896	
mm_171167.1	chr3	27154982	27155182	-	1	NA	NA	NA	1056	NR_040548	76657	Mm.417839	NR_040548	ENSMUSG00000097584	1700125G22Rik	-	RIKEN cDNA 1700125G22 gene	ncRNA	0.015000	0.487562	
mm_113679.1	chr13	42790500	42790700	+	1	NA	NA	NA	-75647	NM_001302636	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.000000	0.442786	
mm_115751.1	chr13	19182263	19182463	-	1	NA	NA	NA	213450	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.025000	0.482587	86(AGCTTTAAATGC,-,0.00)
mm_160083.1	chr7	13733406	13733606	+	1	NA	NA	NA	0	NM_009286	100043194	Mm.457986	NM_009286	ENSMUSG00000070811	Sult2a2	C730007P19Rik|ST|ST2A2|Sth2|mSTa2	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 2	protein-coding	0.005000	0.348259	
mm_28467.1	chr3	90695614	90695814	-	1	NA	NA	NA	7	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.010000	0.472637	-10(GCCTATAAATAC,-,0.00)
mm_151051.1	chr19	47090674	47090874	+	1	NA	NA	NA	8	NM_011053	18572	Mm.41166	NM_011053	ENSMUSG00000025047	Pdcd11	1110021I22Rik|ALG-4|Pdcd7|mKIAA0185	programmed cell death 11	protein-coding	0.135000	0.631841	
mm_139333.1	chr17	49428302	49428502	+	1	NA	NA	NA	38	NM_020042	56738	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.075000	0.636816	
mm_170942.1	chr2	4959646	4959846	-	1	NA	NA	NA	-16376	NM_001311208	68527	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding	0.045000	0.532338	
mm_79478.1	chr9	56952649	56952849	+	1	NA	NA	NA	1825	NM_178374	66069	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	0.010000	0.437811	
mm_54254.1	chr6	28262360	28262560	-	1	NA	NA	NA	-859	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.040000	0.562189	
mm_11710.1	chr2	36230419	36230619	+	1	NA	NA	NA	93	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.045000	0.651741	
mm_148784.1	chr19	6114352	6114552	+	1	NA	NA	NA	4134	NM_133678	66406	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.015000	0.532338	
mm_56937.1	chr6	119848044	119848244	-	1	NA	NA	NA	6	NM_053204	111173	Mm.288860	NM_053204	ENSMUSG00000030172	Erc1	4930404L01Rik|5033405M01Rik|9630025C19Rik|B430107L16Rik|CAST2|ELKS|Elks1|RAB6IP2A|RAB6IP2B|Rab6ip2|mKIAA1081	ELKS/RAB6-interacting/CAST family member 1	protein-coding	0.160000	0.800995	
mm_111761.1	chr12	103989833	103990033	-	1	NA	NA	NA	10	NM_199314	380780	Mm.201338	NM_199314	ENSMUSG00000063232	Serpina11	Gm895	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11	protein-coding	0.015000	0.497512	
mm_47431.1	chr5	123175846	123176046	-	1	NA	NA	NA	6740	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.020000	0.497512	
mm_38719.1	chr4	145234679	145234879	-	1	NA	NA	NA	12091	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.000000	0.422886	
mm_123752.1	chr14	70195891	70196091	-	1	NA	NA	NA	-3745	NM_001271409	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.005000	0.582090	
mm_120381.1	chr14	64588452	64588652	+	1	NA	NA	NA	437	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA	0.020000	0.432836	
mm_119667.1	chr14	52427842	52428042	+	1	NA	NA	NA	-17015	NM_146431	258423	Mm.377492	NM_146431	ENSMUSG00000063106	Olfr1510	MOR223-6	olfactory receptor 1510	protein-coding	0.005000	0.537313	
mm_47232.1	chr5	121385481	121385681	-	1	NA	NA	NA	34	NM_001163470	231712	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.115000	0.766169	
mm_75592.1	chr8	61612312	61612512	-	1	NA	NA	NA	-21243	NM_001293774	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.005000	0.338308	
mm_152687.1	chr19	16657683	16657883	-	1	NA	NA	NA	123150	NM_173028	271564	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.000000	0.368159	-87(CCTTTTAAAATT,+,0.00)
mm_112222.1	chr12	113429396	113429596	-	1	NA	NA	NA	-60069	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.437811	60(GCTTAAATAGAT,+,0.00)
mm_148841.1	chr19	6364523	6364723	+	1	NA	NA	NA	933	NR_122118	22668	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.080000	0.606965	
mm_62261.1	chr7	99348823	99349023	+	1	NA	NA	NA	4316	NM_009825	12406	Mm.22708	NM_009825	ENSMUSG00000070436	Serpinh1	BERF-1|Cbp1|Cbp2|Hsp47|J6|Serpinh2|gp46	serine (or cysteine) peptidase inhibitor, clade H, member 1	protein-coding	0.080000	0.611940	
mm_72446.1	chr8	83165463	83165663	+	1	NA	NA	NA	211	NM_027758	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.120000	0.711443	
mm_134851.1	chr16	28159772	28159972	-	1	NA	NA	NA	286203	NM_183064	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.005000	0.273632	
mm_5772.1	chr1	51473932	51474132	-	1	NA	NA	NA	4367	NM_028696	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.005000	0.442786	
mm_149453.1	chr19	11497464	11497664	+	1	NA	NA	NA	5526	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.000000	0.472637	
mm_25415.1	chr3	107368324	107368524	+	1	NA	NA	NA	-35135	NM_001045807	229700	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.010000	0.492537	
mm_109275.1	chr12	109546266	109546466	+	1	NA	NA	NA	968	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.045000	0.611940	
mm_73406.1	chr8	105932546	105932746	+	1	NA	NA	NA	1216	NM_023182	109660	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.025000	0.582090	
mm_20058.1	chr2	120328590	120328790	-	1	NA	NA	NA	-14525	NM_001024145	271844	Mm.24880	NM_001024145	ENSMUSG00000046971	Pla2g4f	4732472I07Rik|Gm647|Pla2zeta	phospholipase A2, group IVF	protein-coding	0.020000	0.517413	
mm_40611.1	chr5	64626756	64626956	+	1	NA	NA	NA	-16157	NR_045078	100042198	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0.020000	0.507463	
mm_38755.1	chr4	147814573	147814773	-	1	NA	NA	NA	-4885	NM_001127189	100041677	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157|OTTMUSG00000010679	zinc finger protein 984	protein-coding	0.000000	0.343284	
mm_26475.1	chr3	144570604	144570804	+	1	NA	NA	NA	277	NM_053102	93684	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.080000	0.656716	
mm_172870.1	chr9	42423580	42423780	+	1	NA	NA	NA	-23751	NM_001324548	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.020000	0.482587	
mm_60315.1	chr7	44198105	44198305	+	1	NA	NA	NA	14	NM_008693	18050	Mm.439740	NM_008693	ENSMUSG00000066515	Klk1b3	Ngfg|gamma-NGF|mGk-3	kallikrein 1-related peptidase b3	protein-coding	0.000000	0.537313	-32(GGGTTTTTAAAG,-,0.00),-30(GTTTTTAAAGTC,+,0.00)
mm_128886.1	chr15	73156481	73156681	-	1	NA	NA	NA	28366	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.010000	0.487562	
mm_101182.1	chr11	17002840	17003040	-	1	NA	NA	NA	5778	NM_019549	56193	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.015000	0.517413	
mm_140808.1	chr17	22314702	22314902	-	1	NA	NA	NA	46598	NM_176962	319615	Mm.442162	NM_176962	ENSMUSG00000033972	Zfp944	6330416L07Rik	zinc finger protein 944	protein-coding	0.070000	0.626866	
mm_166716.1	chr6	118374654	118374854	+	1	NA	NA	NA	44663	NM_194339	213895	Mm.25269	NM_194339	ENSMUSG00000030138	Bms1	AA408648|AU020092|AU043373|BB007109|BC030906|Bms1l|mKIAA0187	BMS1, ribosome biogenesis factor	protein-coding	0.005000	0.552239	
mm_42603.1	chr5	117659811	117660011	+	1	NA	NA	NA	-206928	NM_008712	18125	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.035000	0.492537	
mm_48737.1	chr5	147637207	147637407	-	1	NA	NA	NA	88681	NM_010228	14254	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.000000	0.398010	
mm_4097.1	chr1	167350057	167350257	+	1	NA	NA	NA	166	NM_019993	56752	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.070000	0.641791	
mm_117678.1	chr13	93674225	93674425	-	1	NA	NA	NA	-23	NM_022884	64918	Mm.29981	NM_022884	ENSMUSG00000042118	Bhmt2	C81077|D13Ucla2	betaine-homocysteine methyltransferase 2	protein-coding	0.065000	0.691542	
mm_81336.1	chr9	108517595	108517795	+	1	NA	NA	NA	608	NM_175143	69232	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik	glutamine-rich 1	protein-coding	0.160000	0.766169	
mm_57015.1	chr6	121245649	121245849	-	1	NA	NA	NA	-157	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.070000	0.567164	
mm_156872.1	chrX	164506259	164506459	+	1	NA	NA	NA	8456	NM_027027	69299	Mm.79031	NM_027027	ENSMUSG00000031384	Asb9	1700011M07Rik	ankyrin repeat and SOCS box-containing 9	protein-coding	0.020000	0.537313	
mm_154367.1	chrM	8848	9048	+	1	NA	NA	NA	NA	NA									0.020000	0.412935	
mm_36492.1	chr4	83265960	83266160	-	1	NA	NA	NA	58129	NM_027238	69863	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.025000	0.527363	
mm_33962.1	chr4	137560575	137560775	+	1	NA	NA	NA	14505	NM_001033979	435811	Mm.359646	NM_001033979	ENSMUSG00000094035	Ldlrad2	-	low density lipoprotein receptor A domain containing 2	protein-coding	0.015000	0.472637	
mm_165001.1	chr19	21461223	21461423	-	1	NA	NA	NA	11338	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.000000	0.393035	-14(CTTTATATACAG,+,0.00),47(CCTTTTATGTAG,+,0.00)
mm_17191.1	chr2	25465788	25465988	-	1	NA	NA	NA	3861	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.020000	0.567164	
mm_53306.1	chr6	129180894	129181094	+	1	NA	NA	NA	379	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.030000	0.457711	
mm_27584.1	chr3	59115547	59115747	-	1	NA	NA	NA	-13826	NM_173398	229323	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	0.030000	0.462687	
mm_13508.1	chr2	109693513	109693713	+	1	NA	NA	NA	50	NM_001048142	12064	Mm.1442	NM_007540	ENSMUSG00000048482	Bdnf	-	brain derived neurotrophic factor	protein-coding	0.095000	0.681592	
mm_82481.1	chr9	17675583	17675783	-	1	NA	NA	NA	-616584	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.000000	0.422886	
mm_28460.1	chr3	90694864	90695064	-	1	NA	NA	NA	757	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.000000	0.477612	
mm_45914.1	chr5	89438170	89438370	-	1	NA	NA	NA	19628	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.000000	0.462687	
mm_126153.1	chr15	78409644	78409844	+	1	NA	NA	NA	2640	NM_138670	246221	Mm.294215	NM_138670	ENSMUSG00000071711	Mpst	Mst	mercaptopyruvate sulfurtransferase	protein-coding	0.035000	0.527363	
mm_100450.1	chr11	119671171	119671371	+	1	NA	NA	NA	68366	NM_028898	74370	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	0.020000	0.502488	
mm_31420.1	chr4	48051288	48051488	+	1	NA	NA	NA	142	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.045000	0.582090	
mm_160098.1	chr7	18484088	18484288	-	1	NA	NA	NA	-39	NM_001029893	574429	Mm.296754	NM_001029893	ENSMUSG00000070799	Psg26	EG574429|cea14	pregnancy-specific glycoprotein 26	protein-coding	0.005000	0.477612	
mm_95559.1	chr11	52318665	52318865	+	1	NA	NA	NA	-35751	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.020000	0.542289	
mm_78882.1	chr9	44579524	44579724	+	1	NA	NA	NA	-25268	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.020000	0.517413	
mm_136396.1	chr16	93353980	93354180	-	1	NA	NA	NA	-9	NR_040488	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.020000	0.472637	
mm_118721.1	chr14	22214112	22214312	+	1	NA	NA	NA	194500	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.452736	
mm_31046.1	chr4	41135599	41135799	+	1	NA	NA	NA	-322	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.110000	0.756219	
mm_13051.1	chr2	91099598	91099798	+	1	NA	NA	NA	3020	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.005000	0.393035	43(GACTTTAAAAAA,-,0.00)
mm_159543.1	chr4	88835357	88835557	+	1	NA	NA	NA	-68	NM_010505	15968	Mm.377089	NM_010505	ENSMUSG00000096682	Ifna5	Ifa5	interferon alpha 5	protein-coding	0.000000	0.462687	-35(CCCTATTTAAGA,-,0.00)
mm_123634.1	chr14	68533672	68533872	-	1	NA	NA	NA	-83	NM_007402	11500	Mm.261495	NM_007402	ENSMUSG00000022056	Adam7	ADAM 7|EAP1|EAPI	a disintegrin and metallopeptidase domain 7	protein-coding	0.005000	0.482587	
mm_138529.1	chr17	35242906	35243106	+	1	NA	NA	NA	189	NM_001252457	53817	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	0.050000	0.477612	
mm_71159.1	chr8	40431489	40431689	+	1	NA	NA	NA	7774	NM_178395	70546	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik	zinc finger, DHHC domain containing 2	protein-coding	0.000000	0.293532	
mm_80697.1	chr9	92193010	92193210	+	1	NA	NA	NA	174	NM_001195693	100504689	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	0.040000	0.497512	
mm_64596.1	chr7	3203904	3204104	-	1	NA	NA	NA	-14622	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.015000	0.492537	
mm_56697.1	chr6	114859834	114860034	-	1	NA	NA	NA	61818	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.005000	0.383085	33(GCTCTTAAACCG,+,0.00)
mm_94756.1	chr11	21140558	21140758	+	1	NA	NA	NA	49334	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.010000	0.407960	-39(TTGTTTAAAAGA,-,0.00)
mm_104331.1	chr11	93995698	93995898	-	1	NA	NA	NA	-293	NM_001199203	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.055000	0.582090	
mm_170918.1	chr2	37261708	37261908	-	1	NA	NA	NA	-5143	NM_001081010	545417	Mm.379955	NM_001081010		Olfr367-ps	EG545417|MOR128-1|ORL1283|OTTMUSG00000012147|Olfr367	olfactory receptor 367, pseudogene	protein-coding	0.030000	0.492537	
mm_146266.1	chr18	77870145	77870345	+	1	NA	NA	NA	-68222	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.045000	0.572139	
mm_119564.1	chr14	48878818	48879018	+	1	NA	NA	NA	45	NR_033783	66770	Mm.136954	NR_033783		4933429O19Rik	1700031B11Rik	RIKEN cDNA 4933429O19 gene	ncRNA	0.025000	0.487562	
mm_106849.1	chr12	8007972	8008172	+	1	NA	NA	NA	30395	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.020000	0.298507	
mm_82986.1	chr9	36532077	36532277	-	1	NA	NA	NA	9786	NM_001033783	434396	Mm.118836	NM_001033783	ENSMUSG00000074448	Gm5615	EG434396|Pate-H|Pate9	predicted gene 5615	protein-coding	0.000000	0.427861	
mm_118810.1	chr14	25459227	25459427	+	1	NA	NA	NA	142	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.130000	0.686567	
mm_152759.1	chr19	20375213	20375413	-	1	NA	NA	NA	15358	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.020000	0.427861	
mm_50432.1	chr6	48845068	48845268	+	1	NA	NA	NA	3512	NM_001098271	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.010000	0.557214	
mm_127176.1	chr15	98952963	98953163	+	1	NA	NA	NA	438	NM_011653	22142	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	0.075000	0.572139	
mm_143945.1	chr17	86710469	86710669	-	1	NA	NA	NA	-43295	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.020000	0.427861	-31(TTTTTTAAAGGA,+,0.00)
mm_68134.1	chr7	102239402	102239602	-	1	NA	NA	NA	10616	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.010000	0.537313	
mm_136496.1	chr16	96192142	96192342	-	1	NA	NA	NA	15	NM_001001492	385668	Mm.24626	NM_001001492	ENSMUSG00000045275	Lca5l	4921526F01Rik|Lcca5l	Leber congenital amaurosis 5-like	protein-coding	0.100000	0.671642	
mm_132323.1	chr16	33794018	33794218	+	1	NA	NA	NA	81	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.015000	0.497512	
mm_122691.1	chr14	52020587	52020787	-	1	NA	NA	NA	46	NM_001253696	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.025000	0.537313	
mm_104526.1	chr11	96075566	96075766	-	1	NA	NA	NA	28	NM_007506	11951	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	0.035000	0.577114	
mm_12384.1	chr2	69867409	69867609	+	1	NA	NA	NA	5947	NM_009278	20823	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	0.000000	0.343284	
mm_21906.1	chr2	166446573	166446773	-	1	NA	NA	NA	-778	NR_015558	319684	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.005000	0.502488	-36(CCCTATATATAG,-,0.00)
mm_8577.1	chr1	155812731	155812931	-	1	NA	NA	NA	68	NM_023268	104009	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx	quiescin Q6 sulfhydryl oxidase 1	protein-coding	0.080000	0.661692	
mm_129237.1	chr15	76617250	76617450	-	1	NA	NA	NA	-498	NM_028064	72027	Mm.276829	NM_028064	ENSMUSG00000063354	Slc39a4	1600025H15Rik|AU041686|AWMS2|ZIP4	solute carrier family 39 (zinc transporter), member 4	protein-coding	0.015000	0.562189	
mm_54925.1	chr6	47830447	47830647	-	1	NA	NA	NA	-42	NM_177882	330301	Mm.128149	NM_177882	ENSMUSG00000051499	Zfp786	A730012O14Rik|Znf786	zinc finger protein 786	protein-coding	0.120000	0.721393	
mm_130907.1	chr15	102510720	102510920	-	1	NA	NA	NA	6184	NM_001163643	26404	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0.070000	0.661692	
mm_88397.1	chr10	76576309	76576509	+	1	NA	NA	NA	761	NM_080845	14317	Mm.36278	NM_080845	ENSMUSG00000001155	Ftcd	-	formiminotransferase cyclodeaminase	protein-coding	0.020000	0.567164	
mm_114697.1	chr13	83504048	83504248	+	1	NA	NA	NA	114	NM_001347564	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.030000	0.522388	
mm_100238.1	chr11	117232306	117232506	+	1	NA	NA	NA	32745	NM_001113486	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.035000	0.527363	
mm_42938.1	chr5	122989203	122989403	+	1	NA	NA	NA	-51	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.100000	0.691542	
mm_152931.1	chr19	28486193	28486393	-	1	NA	NA	NA	-191931	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.020000	0.402985	
mm_152831.1	chr19	23207438	23207638	-	1	NA	NA	NA	58107	NR_035423	100316672		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	0.005000	0.288557	
mm_76269.1	chr8	84067186	84067386	-	1	NA	NA	NA	450	NM_009055	19724	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	0.140000	0.796020	
mm_55398.1	chr6	60788426	60788626	-	1	NA	NA	NA	40478	NM_001042451	20617	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alphaSYN	synuclein, alpha	protein-coding	0.005000	0.427861	
mm_165684.1	chr3	90695038	90695238	+	1	NA	NA	NA	583	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.010000	0.507463	
mm_141343.1	chr17	28558261	28558461	-	1	NA	NA	NA	140	NR_105935	102465585		NR_105935	ENSMUSG00000099152	Mir6969	Gm27305|mmu-mir-6969	microRNA 6969	ncRNA	0.035000	0.567164	
mm_161360.1	chr14	56887688	56887888	+	1	NA	NA	NA	-7	NM_029498	76007	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.010000	0.447761	
mm_109211.1	chr12	108677632	108677832	+	1	NA	NA	NA	19112	NR_029771	723909		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.005000	0.447761	
mm_88194.1	chr10	70096743	70096943	+	1	NA	NA	NA	-278	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.110000	0.776119	
mm_90077.1	chr10	116418044	116418244	+	1	NA	NA	NA	23	NR_028107	67342	Mm.245800	NM_026098	ENSMUSG00000020164	Kcnmb4os1	1700058G18Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1	ncRNA	0.050000	0.626866	
mm_9741.1	chr1	180334594	180334794	-	1	NA	NA	NA	-4145	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.025000	0.467662	
mm_96073.1	chr11	59847971	59848171	+	1	NA	NA	NA	-2	NM_134029	103850	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	0.150000	0.761194	-55(GTCCCTTTAAGG,-,0.00),-54(TCCCTTTAAGGG,-,0.00),-53(CCCTTTAAGGGC,+,0.00),-52(CCTTTAAGGGCG,+,0.00)
mm_153778.1	chr19	45783134	45783334	-	1	NA	NA	NA	57	NM_023799	76055	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	2810009A20Rik|4833427O07Rik|5830447M11Rik|AA408215|Hy5|Ncoat|OGA|mKIAA0679	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0.120000	0.766169	
mm_146789.1	chr18	20114675	20114875	-	1	NA	NA	NA	-2	NM_013504	13505	Mm.33740	NM_013504	ENSMUSG00000044322	Dsc1	1110020A10Rik|AI507491	desmocollin 1	protein-coding	0.005000	0.552239	
mm_98612.1	chr11	95842632	95842832	+	1	NA	NA	NA	64	NM_001038664	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.005000	0.537313	
mm_138479.1	chr17	35194945	35195145	+	1	NA	NA	NA	73	NR_105939	102465588		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	0.015000	0.572139	
mm_61091.1	chr7	51724209	51724409	+	1	NA	NA	NA	102479	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.000000	0.442786	
mm_143717.1	chr17	80933727	80933927	-	1	NA	NA	NA	-10805	NM_026516	68027	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0.030000	0.492537	
mm_170084.1	chr17	35445778	35445978	+	1	NA	NA	NA	6711	NM_001201460	110558	Mm.431282	NM_001201460		H2-Q9	H-2Q9|Ped|Qa-2|Qa-9|Qa9	histocompatibility 2, Q region locus 9	protein-coding	0.040000	0.572139	
mm_99864.1	chr11	109397181	109397381	+	1	NA	NA	NA	-28665	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.010000	0.502488	
mm_57609.1	chr6	128124218	128124418	-	1	NA	NA	NA	19260	NM_175414	109246	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597	tetraspanin 9	protein-coding	0.015000	0.522388	
mm_133144.1	chr16	70254344	70254544	+	1	NA	NA	NA	-59505	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.000000	0.422886	
mm_130248.1	chr15	96641106	96641306	-	1	NA	NA	NA	756	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.095000	0.611940	
mm_443.1	chr1	34849880	34850080	+	1	NA	NA	NA	21	NM_145516	226971	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.100000	0.676617	
mm_29205.1	chr3	106787998	106788198	-	1	NA	NA	NA	2051	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.000000	0.407960	
mm_28083.1	chr3	84641384	84641584	-	1	NA	NA	NA	-24708	NM_177260	320782	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.000000	0.437811	-35(GAGTATAAATAG,-,0.00)
mm_69710.1	chr7	140102306	140102506	-	1	NA	NA	NA	35	NM_001286217	69064	Mm.41915	NM_026928	ENSMUSG00000025466	Fuom	Fucu|Le51	fucose mutarotase	protein-coding	0.065000	0.631841	
mm_59549.1	chr7	28071106	28071306	+	1	NA	NA	NA	-30	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.040000	0.592040	
mm_150687.1	chr19	42106071	42106271	+	1	NA	NA	NA	15736	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	0.005000	0.243781	
mm_93694.1	chr10	117844991	117845191	-	1	NA	NA	NA	883	NM_024457	215449	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.035000	0.477612	
mm_90840.1	chr10	8721819	8722019	-	1	NA	NA	NA	164151	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.030000	0.502488	
mm_104152.1	chr11	87108588	87108788	-	1	NA	NA	NA	26	NM_175563	270906	Mm.132381	NM_175563	ENSMUSG00000020493	Prr11	B930067F20Rik	proline rich 11	protein-coding	0.060000	0.452736	
mm_76377.1	chr8	84835435	84835635	-	1	NA	NA	NA	3253	NM_183358	102060	Mm.489649	NM_183358	ENSMUSG00000033751	Gadd45gip1	2310040G17Rik|AI425883|Crif1|MRP-L59|Plinp1	growth arrest and DNA-damage-inducible, gamma interacting protein 1	protein-coding	0.015000	0.407960	
mm_16036.1	chr2	167688680	167688880	+	1	NA	NA	NA	-135	NM_009883	12608	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.180000	0.815920	
mm_87540.1	chr10	53596721	53596921	+	1	NA	NA	NA	-140	NM_025541	66403	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0.125000	0.736318	
mm_115798.1	chr13	19345684	19345884	-	1	NA	NA	NA	50029	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.442786	40(ACCTAGAAAAGG,-,0.00)
mm_12569.1	chr2	72979865	72980065	+	1	NA	NA	NA	481	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.140000	0.786070	
mm_94515.1	chr11	8604988	8605188	+	1	NA	NA	NA	59447	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.020000	0.562189	
mm_42441.1	chr5	115429665	115429865	+	1	NA	NA	NA	80	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.190000	0.845771	
mm_7564.1	chr1	124756310	124756510	-	1	NA	NA	NA	679317	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.000000	0.407960	
mm_169603.1	chr15	35938044	35938244	-	1	NA	NA	NA	102	NM_053071	12864	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0.075000	0.577114	
mm_9850.1	chr1	184732411	184732611	-	1	NA	NA	NA	-18	NM_008250	15284	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.045000	0.383085	-96(GTTTTTAGAGAG,+,0.00)
mm_53157.1	chr6	125313928	125314128	+	1	NA	NA	NA	-158	NM_010736	17000	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|CD18|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	0.080000	0.676617	
mm_118865.1	chr14	25850567	25850767	+	1	NA	NA	NA	8512	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.000000	0.477612	48(GCCTTTAGGGGA,+,0.00)
mm_19945.1	chr2	116999555	116999755	-	1	NA	NA	NA	99503	NR_040335	320975	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.030000	0.552239	
mm_102461.1	chr11	59839736	59839936	-	1	NA	NA	NA	-69	NM_011991	26572	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	0.075000	0.641791	
mm_154059.1	chr19	55127073	55127273	-	1	NA	NA	NA	-27726	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.015000	0.537313	
mm_121406.1	chr14	119303974	119304174	+	1	NA	NA	NA	165809	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.005000	0.318408	
mm_67452.1	chr7	80401367	80401567	-	1	NA	NA	NA	1345	NM_011046	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.005000	0.557214	
mm_20812.1	chr2	144474777	144474977	-	1	NA	NA	NA	9701	NR_038065	171588	Mm.450554	NR_038065	ENSMUSG00000083674	Gm38402	-	zinc finger protein pseudogene	pseudo	0.015000	0.492537	
mm_126722.1	chr15	85402009	85402209	+	1	NA	NA	NA	65728	NM_016843	54138	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.010000	0.502488	-25(TGCTTTAAAAGG,-,0.00),-24(GCTTTAAAAGGG,+,0.00)
mm_147343.1	chr18	43321607	43321807	-	1	NA	NA	NA	51565	NM_001136086	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.020000	0.507463	
mm_112453.1	chr13	5863789	5863989	+	1	NA	NA	NA	2400	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.000000	0.422886	
mm_6422.1	chr1	73928417	73928617	-	1	NA	NA	NA	-64051	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.025000	0.587065	
mm_98150.1	chr11	87593491	87593691	+	1	NA	NA	NA	1374	NM_133215	170749	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0.000000	0.472637	
mm_83149.1	chr9	40456064	40456264	-	1	NA	NA	NA	-400	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.050000	0.582090	
mm_29289.1	chr3	107748985	107749185	-	1	NA	NA	NA	11384	NM_001113530	12977	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0.015000	0.611940	
mm_132377.1	chr16	34921386	34921586	+	1	NA	NA	NA	17843	NR_040536	76649	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.025000	0.577114	
mm_2656.1	chr1	125677037	125677237	+	1	NA	NA	NA	141	NM_027677	71111	Mm.32727	NM_027677	ENSMUSG00000026343	Gpr39	4933415E13Rik	G protein-coupled receptor 39	protein-coding	0.035000	0.552239	
mm_31287.1	chr4	45890261	45890461	+	1	NA	NA	NA	58	NM_198660	381522	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	0.050000	0.601990	
mm_26421.1	chr3	142614705	142614905	+	1	NA	NA	NA	-5858	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.010000	0.318408	
mm_146581.1	chr18	7610502	7610702	-	1	NA	NA	NA	16261	NM_001081287	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0.005000	0.427861	
mm_168407.1	chr1	130195876	130196076	+	1	NA	NA	NA	227067	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	0.025000	0.497512	
mm_167960.1	chrX	142691981	142692181	+	1	NA	NA	NA	10355	NM_001199360	209497	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	0.025000	0.492537	
mm_54007.1	chr6	7817929	7818129	-	1	NA	NA	NA	-27195	NM_052993	94192	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.000000	0.442786	
mm_45274.1	chr5	64805225	64805425	-	1	NA	NA	NA	1802	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.005000	0.452736	
mm_156079.1	chrX	109196710	109196910	+	1	NA	NA	NA	54	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.020000	0.407960	
mm_146531.1	chr18	5334287	5334487	-	1	NA	NA	NA	52	NM_178722	240186	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.130000	0.701493	
mm_36390.1	chr4	77454015	77454215	-	1	NA	NA	NA	757780	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.010000	0.477612	-99(CTTTTAAAAGTG,+,0.00)
mm_68731.1	chr7	120670160	120670360	-	1	NA	NA	NA	-10	NM_001040137	67983	Mm.394441	NM_001040136	ENSMUSG00000030887	Pdzd9	4930408O21Rik	PDZ domain containing 9	protein-coding	0.030000	0.547264	
mm_142395.1	chr17	45020612	45020812	-	1	NA	NA	NA	-139827	NM_029257	75341	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0.010000	0.492537	
mm_120641.1	chr14	70521338	70521538	+	1	NA	NA	NA	-1178	NR_033241	12153	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.015000	0.532338	
mm_72816.1	chr8	88115890	88116090	+	1	NA	NA	NA	-2769	NM_029074	382030	Mm.216574	NM_029074	ENSMUSG00000036810	Cnep1r1	5033428A16Rik|NEP1-R1|Tmem188	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding	0.035000	0.487562	-65(CCTTATATGTCG,+,0.00)
mm_96521.1	chr11	68496439	68496639	+	1	NA	NA	NA	-6480	NM_001004435	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.005000	0.527363	
mm_34635.1	chr4	150614417	150614617	+	1	NA	NA	NA	37657	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.040000	0.542289	
mm_143562.1	chr17	74224884	74225084	-	1	NA	NA	NA	69879	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.000000	0.278607	
mm_154425.1	chrM	308	508	-	1	NA	NA	NA	NA	NA									0.040000	0.348259	
mm_53700.1	chr6	142756871	142757071	+	1	NA	NA	NA	285	NM_009908	12764	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.110000	0.736318	
mm_145814.1	chr18	65430676	65430876	+	1	NA	NA	NA	-221	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.080000	0.671642	
mm_159893.1	chr6	29471298	29471498	+	1	NA	NA	NA	-39	NM_001145360	668210	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	0.000000	0.527363	
mm_127074.1	chr15	97377088	97377288	+	1	NA	NA	NA	-129901	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.040000	0.587065	
mm_52000.1	chr6	92816394	92816594	+	1	NA	NA	NA	84947	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	0.025000	0.562189	
mm_108815.1	chr12	95692237	95692437	+	1	NA	NA	NA	111	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.045000	0.547264	
mm_83776.1	chr9	52127771	52127971	-	1	NA	NA	NA	12248	NR_105750	102465150		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	0.005000	0.412935	
mm_150281.1	chr19	34290561	34290761	+	1	NA	NA	NA	2	NM_001146708	14102	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	0.045000	0.621891	
mm_123331.1	chr14	63049778	63049978	-	1	NA	NA	NA	2887	NM_001034910	619548	Mm.387101	NM_001034910	ENSMUSG00000054763	Defb42	BD-42|Defb44|mBD-42	defensin beta 42	protein-coding	0.015000	0.577114	
mm_24878.1	chr3	95993937	95994137	+	1	NA	NA	NA	1802	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.010000	0.532338	79(CCTTTTAGACAA,+,0.00)
mm_172510.1	chr7	7130624	7130824	-	1	NA	NA	NA	6031	NM_029584	76373	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	0.025000	0.522388	
mm_33855.1	chr4	135876834	135877034	+	1	NA	NA	NA	-3088	NM_026383	52830	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.025000	0.582090	-33(GACCTTAAAGAG,-,0.00),-31(CCTTAAAGAGCC,+,0.00)
mm_105512.1	chr11	106255709	106255909	-	1	NA	NA	NA	-7	NM_025310	56095	Mm.29795	NM_025310	ENSMUSG00000020706	Ftsj3	AA537063|AU045295|C79843|D11Ertd400e|Epcs3	FtsJ RNA methyltransferase homolog 3 (E. coli)	protein-coding	0.065000	0.497512	
mm_97082.1	chr11	73047778	73047978	+	1	NA	NA	NA	11	NM_025818	66874	Mm.41903	NM_025818	ENSMUSG00000020783	Ncbp3	1200014J11Rik|C130061O14Rik|C78393	nuclear cap binding subunit 3	protein-coding	0.120000	0.696517	
mm_101336.1	chr11	23497955	23498155	-	1	NA	NA	NA	-16	NM_172391	268390	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	0.085000	0.751244	
mm_82631.1	chr9	21927471	21927671	-	1	NA	NA	NA	-36	NM_001253870	235043	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0.070000	0.592040	
mm_91763.1	chr10	51494741	51494941	-	1	NA	NA	NA	3943	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.005000	0.452736	
mm_84635.1	chr9	71162994	71163194	-	1	NA	NA	NA	195	NR_073483	64008	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.015000	0.482587	
mm_160601.1	chr9	77543992	77544192	-	1	NA	NA	NA	-33	NM_172528	214345	Mm.28534	NM_172528	ENSMUSG00000032352	Lrrc1	A430093J20Rik|AU016091|D030059I21|mKIAA4018	leucine rich repeat containing 1	protein-coding	0.045000	0.582090	
mm_59152.1	chr7	24370009	24370209	+	1	NA	NA	NA	-154	NM_001163510	16534	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0.025000	0.542289	
mm_142148.1	chr17	36006540	36006740	-	1	NA	NA	NA	12136	NR_015618	77810	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0.010000	0.402985	
mm_151251.1	chr19	53907271	53907471	+	1	NA	NA	NA	4020	NM_001168491	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.005000	0.288557	
mm_45124.1	chr5	46007476	46007676	-	1	NA	NA	NA	-75167	NR_110478	78106	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	0.015000	0.432836	-66(CCTCTTAAACTG,+,0.00)
mm_166697.1	chr6	114249585	114249785	+	1	NA	NA	NA	-32950	NM_178703	232333	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.000000	0.422886	
mm_94613.1	chr11	16752109	16752309	+	1	NA	NA	NA	6	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.065000	0.651741	
mm_91678.1	chr10	43533067	43533267	-	1	NA	NA	NA	7827	NM_026411	67851	Mm.209953	NM_026411	ENSMUSG00000019797	1700021F05Rik	-	RIKEN cDNA 1700021F05 gene	protein-coding	0.040000	0.572139	
mm_35576.1	chr4	41739396	41739596	-	1	NA	NA	NA	1863	NM_001286540	18391	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0.045000	0.582090	
mm_107874.1	chr12	69946081	69946281	+	1	NA	NA	NA	-17228	NR_036607	100040999	Mm.394588	NR_036607	ENSMUSG00000079076	Gm3086	-	RuvB-like protein 1 pseudogene	pseudo	0.020000	0.462687	
mm_169036.1	chr13	13437500	13437700	+	1	NA	NA	NA	-2	NM_010917	18073	Mm.4691	NM_010917	ENSMUSG00000005397	Nid1	A630025O17|Nid|entactin|entactin-1|nidogen-1	nidogen 1	protein-coding	0.070000	0.666667	
mm_100802.1	chr11	4992482	4992682	-	1	NA	NA	NA	5758	NM_007454	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.010000	0.412935	-61(CACTTTAAAGAC,-,0.00)
mm_158580.1	chrX	150657300	150657500	-	1	NA	NA	NA	36	NM_019548	56191	Mm.3597	NM_019548	ENSMUSG00000025272	Tro	AA409408|Maged3|Maged3l|Tnn|Trol|magphinin	trophinin	protein-coding	0.055000	0.671642	
mm_78060.1	chr9	14903398	14903598	+	1	NA	NA	NA	453	NM_176807	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.015000	0.542289	
mm_145294.1	chr18	53252310	53252510	+	1	NA	NA	NA	6748	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.020000	0.427861	
mm_66027.1	chr7	30613763	30613963	-	1	NA	NA	NA	-1129	NM_026815	109637	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	0.025000	0.477612	
mm_41484.1	chr5	92083335	92083535	+	1	NA	NA	NA	163	NM_001080794	23881	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.115000	0.676617	
mm_155247.1	chrX	57223560	57223760	+	1	NA	NA	NA	11517	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.005000	0.467662	
mm_43159.1	chr5	127027276	127027476	+	1	NA	NA	NA	-3413	NR_040685	71247	Mm.399586	NR_040685	ENSMUSG00000105490	4933438B17Rik	-	RIKEN cDNA 4933438B17 gene	ncRNA	0.020000	0.517413	
mm_103026.1	chr11	69735138	69735338	-	1	NA	NA	NA	23395	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.010000	0.527363	
mm_21900.1	chr2	166156093	166156293	-	1	NA	NA	NA	-510	NM_028072	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.055000	0.507463	
mm_152543.1	chr19	11335981	11336181	-	1	NA	NA	NA	65	NM_001025610	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.015000	0.532338	
mm_28228.1	chr3	88454726	88454926	-	1	NA	NA	NA	935	NM_013658	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.005000	0.567164	
mm_83015.1	chr9	36784467	36784667	-	1	NA	NA	NA	12501	NM_007915	13663	Mm.4337	NM_007915	ENSMUSG00000062762	Ei24	AA536736|AI115355|PIG8	etoposide induced 2.4 mRNA	protein-coding	0.005000	0.482587	
mm_49074.1	chr6	5959190	5959390	+	1	NA	NA	NA	18103	NR_040255	72249	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA	0.000000	0.328358	
mm_52705.1	chr6	119386568	119386768	+	1	NA	NA	NA	30815	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.010000	0.368159	
mm_11589.1	chr2	33215968	33216168	+	1	NA	NA	NA	107	NM_011923	26360	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0.020000	0.631841	-82(GCTTTTCTGGGG,+,0.00)
mm_141837.1	chr17	34637973	34638173	-	1	NA	NA	NA	-6810	NM_019873	56299	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0.010000	0.417910	
mm_10364.1	chr2	11705362	11705562	+	1	NA	NA	NA	169	NM_001271497	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.015000	0.507463	
mm_26353.1	chr3	142548829	142549029	+	1	NA	NA	NA	-11123	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.005000	0.278607	76(GCTTTTAGAGCA,+,0.00)
mm_11161.1	chr2	28555794	28555994	+	1	NA	NA	NA	7509	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.000000	0.417910	
mm_24616.1	chr3	93504970	93505170	+	1	NA	NA	NA	-15426	NM_016740	20195	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0.005000	0.452736	
mm_18581.1	chr2	66165283	66165483	-	1	NA	NA	NA	-40590	NM_015736	14425	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.025000	0.507463	-34(GAGTATAAATGG,-,0.00)
mm_14944.1	chr2	151827341	151827541	+	1	NA	NA	NA	-15486	NM_001040689	228770	Mm.159868	NM_001040689	ENSMUSG00000032852	Rspo4	A730099F22|A930029K19Rik	R-spondin 4	protein-coding	0.010000	0.547264	
mm_69894.1	chr7	141637638	141637838	-	1	NA	NA	NA	17037	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.010000	0.537313	
mm_112143.1	chr12	113153776	113153976	-	1	NA	NA	NA	1864	NM_007763	12925	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	0.015000	0.562189	10(GTTTATTAAAGG,-,0.00)
mm_107310.1	chr12	31168758	31168958	+	1	NA	NA	NA	-4	NR_102715	100043065	Mm.479482	NM_001034058		6030469F06Rik	-	RIKEN cDNA 6030469F06 gene	ncRNA	0.005000	0.368159	
mm_11158.1	chr2	28549370	28549570	+	1	NA	NA	NA	13933	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.040000	0.616915	
mm_115846.1	chr13	21287309	21287509	-	1	NA	NA	NA	5277	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.020000	0.507463	74(CCCCCTTAAAGA,-,0.00),75(CCCCTTAAAGAC,+,0.00),77(CCTTAAAGACTG,+,0.00)
mm_166898.1	chr7	28382801	28383001	-	1	NA	NA	NA	-3673	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.000000	0.462687	-34(CCACATAAAGGG,-,0.00)
mm_3249.1	chr1	136131326	136131526	+	1	NA	NA	NA	25	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.115000	0.741294	
mm_149832.1	chr19	24673908	24674108	+	1	NA	NA	NA	0	NM_183160	226040	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	0.010000	0.532338	-35(CTGTATATAAGG,-,0.00)
mm_61800.1	chr7	84232908	84233108	+	1	NA	NA	NA	-81115	NM_133722	70178	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.000000	0.487562	
mm_63552.1	chr7	128070818	128071018	+	1	NA	NA	NA	8278	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.030000	0.562189	
mm_44724.1	chr5	30961279	30961479	-	1	NA	NA	NA	-1052	NM_016703	50907	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0.005000	0.437811	
mm_5565.1	chr1	38897843	38898043	-	1	NA	NA	NA	217	NM_145142	98388	Mm.260054	NM_145142	ENSMUSG00000026080	Chst10	AI507003|AU041319|Hnk-1st|ST	carbohydrate sulfotransferase 10	protein-coding	0.095000	0.736318	
mm_84845.1	chr9	78396006	78396206	-	1	NA	NA	NA	329	NM_001191044	100048658	Mm.158166	NM_001191044	ENSMUSG00000070291	Ddx43	ENSMUSG00000070291|OTTMUSG00000019690	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	protein-coding	0.160000	0.771144	
mm_113592.1	chr13	40944278	40944478	+	1	NA	NA	NA	26744	NM_133219	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.005000	0.522388	-31(GTATATATAGCC,+,0.00)
mm_60752.1	chr7	45486239	45486439	+	1	NA	NA	NA	76	NM_001290999	56734	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0.020000	0.527363	
mm_143749.1	chr17	81568604	81568804	-	1	NA	NA	NA	169683	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.412935	
mm_124198.1	chr14	98169228	98169428	-	1	NA	NA	NA	437	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.035000	0.621891	5(CCTTATATGTGA,+,0.00)
mm_130791.1	chr15	101680190	101680390	-	1	NA	NA	NA	-1	NM_010669	16688	Mm.441891	NM_010669	ENSMUSG00000023041	Krt6b	BB144589|Krt2-6b|mK6[b]	keratin 6B	protein-coding	0.010000	0.537313	-33(CCATATATAAGC,+,0.00),-33(CCATATATAAGC,-,0.00)
mm_81743.1	chr9	113812484	113812684	+	1	NA	NA	NA	-2	NM_001286601	76499	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.005000	0.422886	
mm_57359.1	chr6	124761188	124761388	-	1	NA	NA	NA	-4801	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.045000	0.567164	
mm_10692.1	chr2	22622325	22622525	+	1	NA	NA	NA	98	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.070000	0.587065	
mm_157955.1	chrX	87763661	87763861	-	1	NA	NA	NA	351862	NM_001160403	331461	Mm.121680	NM_001160403	ENSMUSG00000052372	Il1rapl1	6330532G10Rik|C030039N24|IL1R8|IL1RAPL|MRX34|OPHN4|TIGIRR-2	interleukin 1 receptor accessory protein-like 1	protein-coding	0.000000	0.223881	
mm_45557.1	chr5	73180100	73180300	-	1	NA	NA	NA	76418	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.020000	0.393035	
mm_19034.1	chr2	76969719	76969919	-	1	NA	NA	NA	12728	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.045000	0.592040	
mm_134021.1	chr16	4880363	4880563	-	1	NA	NA	NA	-612	NM_145359	207740	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.065000	0.552239	
mm_5902.1	chr1	54907070	54907270	-	1	NA	NA	NA	19217	NM_001081433	329154	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.035000	0.522388	
mm_133193.1	chr16	72776950	72777150	+	1	NA	NA	NA	113901	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.005000	0.288557	-73(CGCTTTAAAAAA,-,0.00),83(CTGTATATAAAC,-,0.00)
mm_131682.1	chr16	20675633	20675833	+	1	NA	NA	NA	3006	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.010000	0.502488	
mm_151139.1	chr19	53038745	53038945	+	1	NA	NA	NA	-191	NM_133216	170750	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	0.035000	0.527363	-34(CTCCATTTAAGA,-,0.00)
mm_84425.1	chr9	65827460	65827660	-	1	NA	NA	NA	4	NM_172536	214812	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	0.145000	0.840796	
mm_131144.1	chr16	6460334	6460534	+	1	NA	NA	NA	484847	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA	0.005000	0.363184	
mm_83926.1	chr9	56635017	56635217	-	1	NA	NA	NA	531	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.115000	0.731343	
mm_51960.1	chr6	91757822	91758022	+	1	NA	NA	NA	49471	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.010000	0.552239	
mm_118011.1	chr13	100724782	100724982	-	1	NA	NA	NA	6060	NM_009874	12572	Mm.259718	NM_009874	ENSMUSG00000069089	Cdk7	AI323415|AI528512|C230069N13|Cdkn7|Crk4	cyclin-dependent kinase 7	protein-coding	0.005000	0.383085	
mm_80143.1	chr9	70779449	70779649	+	1	NA	NA	NA	100567	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.015000	0.402985	
mm_65539.1	chr7	26187944	26188144	-	1	NA	NA	NA	14635	NM_010000	13094	Mm.14413	NM_010000	ENSMUSG00000040660	Cyp2b9	Cyp2b	cytochrome P450, family 2, subfamily b, polypeptide 9	protein-coding	0.000000	0.343284	
mm_161464.1	chr15	77756841	77757041	-	1	NA	NA	NA	-1712	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.025000	0.522388	
mm_124650.1	chr15	5179657	5179857	+	1	NA	NA	NA	-5803	NM_026213	67515	Mm.254979	NM_026213	ENSMUSG00000022151	Ttc33	2410099M07Rik|2900001O04Rik|AI507072|AW538342|Osrf	tetratricopeptide repeat domain 33	protein-coding	0.010000	0.378109	
mm_144193.1	chr18	7869787	7869987	+	1	NA	NA	NA	690	NM_153085	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.130000	0.701493	
mm_4146.1	chr1	170985921	170986121	+	1	NA	NA	NA	-9950	NM_010187	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.010000	0.447761	-58(TTCTCTAAGAGG,-,0.00)
mm_17436.1	chr2	27570853	27571053	-	1	NA	NA	NA	55806	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.015000	0.487562	79(TACCATAAAAGC,-,0.00)
mm_147111.1	chr18	35708319	35708519	-	1	NA	NA	NA	-5275	NM_029669	76594	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	0.020000	0.407960	
mm_122538.1	chr14	47418079	47418279	-	1	NA	NA	NA	228	NM_144553	218977	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	discs, large (Drosophila) homolog-associated protein 5	protein-coding	0.060000	0.557214	
mm_74543.1	chr8	9977570	9977770	-	1	NA	NA	NA	-47	NM_001081119	68904	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	0.055000	0.582090	
mm_19738.1	chr2	104712051	104712251	-	1	NA	NA	NA	11	NM_177190	320554	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	0.155000	0.810945	
mm_23406.1	chr3	58414686	58414886	+	1	NA	NA	NA	66	NM_001081229	72033	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.120000	0.686567	
mm_120149.1	chr14	60489745	60489945	+	1	NA	NA	NA	111559	NM_001164705	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.010000	0.388060	
mm_29635.1	chr3	121814216	121814416	-	1	NA	NA	NA	899	NM_008991	19299	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.015000	0.368159	
mm_158882.1	chr1	8470365	8470565	-	1	NA	NA	NA	829412	NM_001290390	71096	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	0.005000	0.497512	
mm_161770.1	chr17	36981108	36981308	-	1	NA	NA	NA	29	NM_029747	76797	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding	0.035000	0.507463	-52(CCATTTATAGCT,+,0.00)
mm_89935.1	chr10	111253502	111253702	+	1	NA	NA	NA	-45077	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.000000	0.393035	
mm_8209.1	chr1	138136360	138136560	-	1	NA	NA	NA	38666	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.040000	0.487562	
mm_98982.1	chr11	98741711	98741911	+	1	NA	NA	NA	26	NM_001313983	21833	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.145000	0.825871	
mm_165610.1	chr3	52972641	52972841	+	1	NA	NA	NA	44482	NM_026225	67542	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	0.025000	0.512438	
mm_139880.1	chr17	70751312	70751512	+	1	NA	NA	NA	95365	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.040000	0.542289	
mm_101361.1	chr11	23741024	23741224	-	1	NA	NA	NA	29846	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.010000	0.487562	
mm_141161.1	chr17	26508773	26508973	-	1	NA	NA	NA	-401	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.080000	0.641791	
mm_59674.1	chr7	28381298	28381498	+	1	NA	NA	NA	-2170	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.035000	0.527363	
mm_148067.1	chr18	72330515	72330715	-	1	NA	NA	NA	20454	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.015000	0.358209	
mm_146268.1	chr18	77875255	77875455	+	1	NA	NA	NA	-63112	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.015000	0.502488	
mm_104185.1	chr11	87797336	87797536	-	1	NA	NA	NA	3652	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.060000	0.592040	
mm_150891.1	chr19	45364097	45364297	+	1	NA	NA	NA	463	NM_001037758	12234	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.065000	0.671642	
mm_129754.1	chr15	82354186	82354386	-	1	NA	NA	NA	5	NM_025987	67130	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	0.100000	0.691542	
mm_141446.1	chr17	29888482	29888682	-	1	NA	NA	NA	-700	NM_001081160	74762	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0.100000	0.721393	
mm_100658.1	chr11	3198439	3198639	-	1	NA	NA	NA	-3814	NM_001166548	74203	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0.000000	0.422886	
mm_63924.1	chr7	139389017	139389217	+	1	NA	NA	NA	8	NM_001127363	212111	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.150000	0.771144	
mm_14560.1	chr2	134845435	134845635	+	1	NA	NA	NA	59371	NM_001145830	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding	0.010000	0.472637	
mm_121631.1	chr14	8367152	8367352	-	1	NA	NA	NA	11511	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.000000	0.457711	
mm_44042.1	chr5	147546497	147546697	+	1	NA	NA	NA	116017	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.010000	0.388060	
mm_12837.1	chr2	80836989	80837189	+	1	NA	NA	NA	197825	NM_001190179	69482	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	0.020000	0.402985	
mm_161674.1	chr17	14978611	14978811	-	1	NA	NA	NA	101	NM_001123368	100041586	Mm.440445	NM_001123368	ENSMUSG00000079710	Gm3417	-	predicted gene 3417	protein-coding	0.140000	0.716418	
mm_112762.1	chr13	19350214	19350414	+	1	NA	NA	NA	45499	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.427861	
mm_9000.1	chr1	165775202	165775402	-	1	NA	NA	NA	11522	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.000000	0.343284	
mm_42349.1	chr5	114911294	114911494	+	1	NA	NA	NA	-11846	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.025000	0.452736	-87(CCTTAAAGAGCT,+,0.00)
mm_150733.1	chr19	43731689	43731889	+	1	NA	NA	NA	21211	NM_144874	226139	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	0.010000	0.487562	
mm_125240.1	chr15	34306612	34306812	+	1	NA	NA	NA	31	NM_016762	17181	Mm.396856	NM_016762	ENSMUSG00000022324	Matn2	Crtm2|matrilin-2	matrilin 2	protein-coding	0.100000	0.676617	
mm_42428.1	chr5	115341148	115341348	+	1	NA	NA	NA	1	NM_026933	69076	Mm.27951	NM_026933	ENSMUSG00000029535	Triap1	1810015M01Rik|AU020874|AU043831|P53csv|Wf-1	TP53 regulated inhibitor of apoptosis 1	protein-coding	0.105000	0.631841	
mm_114023.1	chr13	52632872	52633072	+	1	NA	NA	NA	36090	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.025000	0.537313	
mm_171764.1	chr5	10763806	10764006	+	1	NA	NA	NA	-101123	NR_003596	623849	Mm.335888	NR_003596	ENSMUSG00000091422	Gm6455	EG623849	predicted gene 6455	pseudo	0.010000	0.507463	-14(CCCCTTATAAGC,-,0.00),-12(CCTTATAAGCAC,+,0.00)
mm_169707.1	chr15	75841806	75842006	-	1	NA	NA	NA	2	NM_172121	223642	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0.110000	0.661692	
mm_112648.1	chr13	16017526	16017726	+	1	NA	NA	NA	5775	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.055000	0.582090	
mm_86342.1	chr9	123260718	123260918	-	1	NA	NA	NA	-29	NM_001002267	72309	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	0.105000	0.731343	
mm_43702.1	chr5	139252655	139252855	+	1	NA	NA	NA	431	NM_026269	67604	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.075000	0.661692	
mm_76458.1	chr8	85299674	85299874	-	1	NA	NA	NA	142	NR_028268	56452	Mm.29709	NM_019716	ENSMUSG00000031697	Orc6	6720420I10Rik|Orc6l	origin recognition complex, subunit 6	protein-coding	0.080000	0.606965	
mm_4407.1	chr1	172481679	172481879	+	1	NA	NA	NA	-434	NM_001145800	93842	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	0.025000	0.567164	
mm_2413.1	chr1	93859756	93859956	+	1	NA	NA	NA	-1488	NM_199366	381334	Mm.482878	NM_199366	ENSMUSG00000094651	Gal3st2	GP3ST|Gm988	galactose-3-O-sulfotransferase 2	protein-coding	0.000000	0.447761	-78(GATTTTATAGCC,+,0.00)
mm_35166.1	chr4	14621695	14621895	-	1	NA	NA	NA	-17	NM_145947	208890	Mm.483839	NM_145947	ENSMUSG00000040569	Slc26a7	-	solute carrier family 26, member 7	protein-coding	0.015000	0.417910	-16(GAATATAAAGGG,-,0.00)
mm_78879.1	chr9	44498133	44498333	+	1	NA	NA	NA	-903	NM_030256	80288	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.030000	0.592040	
mm_115996.1	chr13	24414706	24414906	-	1	NA	NA	NA	-316	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.005000	0.527363	
mm_154117.1	chr19	57182204	57182404	-	1	NA	NA	NA	15327	NM_001103177	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.025000	0.537313	
mm_27662.1	chr3	65302557	65302757	-	1	NA	NA	NA	28	NR_126080	102637797	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	0.015000	0.457711	
mm_13453.1	chr2	105425896	105426096	+	1	NA	NA	NA	-26677	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0.030000	0.512438	
mm_147803.1	chr18	61658173	61658373	-	1	NA	NA	NA	7265	NR_045402	328968	Mm.392305	NR_045402		Carmn	Carmen|E330013P06|Gm16908|Mir143hg	cardiac mesoderm enhancer-associated non-coding RNA	ncRNA	0.005000	0.542289	40(TACCATAAAAGG,-,0.00),42(CCATAAAAGGAC,+,0.00)
mm_76445.1	chr8	85060353	85060553	-	1	NA	NA	NA	7	NR_110582	320466	Mm.401371	NR_110581	ENSMUSG00000087026	A230103J11Rik	-	RIKEN cDNA A230103J11 gene	ncRNA	0.095000	0.641791	
mm_145494.1	chr18	60390103	60390303	+	1	NA	NA	NA	14174	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.015000	0.427861	
mm_53367.1	chr6	129403509	129403709	+	1	NA	NA	NA	-5253	NM_001205363	232414	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0.030000	0.447761	
mm_121387.1	chr14	118953425	118953625	+	1	NA	NA	NA	15593	NM_008929	100037258	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.015000	0.517413	
mm_140684.1	chr17	13008228	13008428	-	1	NA	NA	NA	489	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.075000	0.631841	
mm_41542.1	chr5	92877589	92877789	+	1	NA	NA	NA	-20304	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.005000	0.383085	
mm_162071.1	chrX	16911456	16911656	-	1	NA	NA	NA	218	NM_010883	17986	Mm.5014	NM_010883	ENSMUSG00000040138	Ndp	ND|Ndph	Norrie disease (pseudoglioma) (human)	protein-coding	0.010000	0.472637	50(AAATATAAAAGG,-,0.00)
mm_97379.1	chr11	77713572	77713772	+	1	NA	NA	NA	11621	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.000000	0.393035	
mm_64522.1	chr7	143847265	143847465	+	1	NA	NA	NA	24198	NM_007856	13360	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	0.030000	0.567164	
mm_60132.1	chr7	37320897	37321097	+	1	NA	NA	NA	448755	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.055000	0.582090	
mm_123635.1	chr14	68533689	68533889	-	1	NA	NA	NA	-100	NM_007402	11500	Mm.261495	NM_007402	ENSMUSG00000022056	Adam7	ADAM 7|EAP1|EAPI	a disintegrin and metallopeptidase domain 7	protein-coding	0.005000	0.497512	
mm_52249.1	chr6	106771599	106771799	+	1	NA	NA	NA	2561	NM_001242358	70047	Mm.196332	NM_027296	ENSMUSG00000013736	Trnt1	2410043H24Rik|2610044E04Rik|9830143O18Rik|AA408384|C76540|CGI-47|mt-Trat	tRNA nucleotidyl transferase, CCA-adding, 1	protein-coding	0.005000	0.472637	
mm_111255.1	chr12	84959460	84959660	-	1	NA	NA	NA	11326	NM_178065	68497	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	0.005000	0.427861	
mm_66990.1	chr7	64058599	64058799	-	1	NA	NA	NA	-95136	NM_001039104	17364	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.005000	0.582090	
mm_64225.1	chr7	141625346	141625546	+	1	NA	NA	NA	4745	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.000000	0.452736	
mm_139922.1	chr17	70988384	70988584	+	1	NA	NA	NA	2032	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.020000	0.492537	
mm_89507.1	chr10	94114621	94114821	+	1	NA	NA	NA	-33210	NM_011629	22025	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	0.000000	0.388060	
mm_119666.1	chr14	52328010	52328210	+	1	NA	NA	NA	560	NM_015772	50524	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding	0.050000	0.616915	
mm_103723.1	chr11	79530408	79530608	-	1	NA	NA	NA	101	NM_146023	101488212	Mm.439665	NM_146023	ENSMUSG00000070354	Gm21975	Evi2a-evi2b	predicted gene 21975	protein-coding	0.010000	0.407960	27(CTCTTTAAAAAA,-,0.00)
mm_124939.1	chr15	12248702	12248902	+	1	NA	NA	NA	43708	NM_172958	268783	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.010000	0.368159	
mm_10975.1	chr2	25736907	25737107	+	1	NA	NA	NA	-2	NM_001099301	383678	Mm.464561	NM_001099301	ENSMUSG00000079539	Obp2b	Lcn14|OTTMUSG00000012631	odorant binding protein 2B	protein-coding	0.005000	0.606965	-31(GGATATAAAGGG,-,0.00)
mm_145574.1	chr18	60925526	60925726	+	1	NA	NA	NA	-6	NM_177407	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.065000	0.646766	
mm_143568.1	chr17	74294923	74295123	-	1	NA	NA	NA	-160	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.155000	0.791045	
mm_140822.1	chr17	23599443	23599643	-	1	NA	NA	NA	-56	NM_011747	22654	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	4933429B21|AI835008|Krox-8|Rhit|Zfp-13	zinc finger protein 13	protein-coding	0.040000	0.557214	
mm_93754.1	chr10	120173586	120173786	-	1	NA	NA	NA	27851	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.025000	0.512438	
mm_18273.1	chr2	52372421	52372621	-	1	NA	NA	NA	-33723	NM_010889	17996	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	0.015000	0.432836	
mm_167216.1	chr8	8914682	8914882	+	1	NA	NA	NA	217506	NR_045854	71249	Mm.158635	NR_045854	ENSMUSG00000108848	4933430N04Rik	-	RIKEN cDNA 4933430N04 gene	ncRNA	0.010000	0.363184	
mm_30777.1	chr4	19122567	19122767	+	1	NA	NA	NA	-158183	NM_013927	30952	Mm.445778	NM_013927	ENSMUSG00000056494	Cngb3	CCNC2|CNG6|Cngbeta2	cyclic nucleotide gated channel beta 3	protein-coding	0.005000	0.507463	
mm_57250.1	chr6	123283334	123283534	-	1	NA	NA	NA	6437	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.378109	
mm_29783.1	chr3	127498960	127499160	-	1	NA	NA	NA	55	NM_001327938	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.095000	0.661692	
mm_25617.1	chr3	118433838	118434038	+	1	NA	NA	NA	81	NR_029551	387155		NR_029551	ENSMUSG00000065569	Mir137	Mirn137|mir-137|mmu-mir-137	microRNA 137	ncRNA	0.065000	0.547264	
mm_71865.1	chr8	69096141	69096341	+	1	NA	NA	NA	-7019	NM_153054	110877	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	0.010000	0.427861	
mm_159488.1	chr4	42273198	42273398	+	1	NA	NA	NA	17567	NM_011335	100042493	Mm.407493	NM_011335	ENSMUSG00000095675	Ccl21b	6CKBAC1|6Ckine|AI159701|CKb9|SLC|Scya21|Scya21a|TCA4	chemokine (C-C motif) ligand 21B (leucine)	protein-coding	0.030000	0.582090	
mm_135849.1	chr16	59495675	59495875	-	1	NA	NA	NA	24000	NM_025910	67014	Mm.289150	NM_025910	ENSMUSG00000022724	Mina	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204	myc induced nuclear antigen	protein-coding	0.015000	0.412935	
mm_128198.1	chr15	35155676	35155876	-	1	NA	NA	NA	30	NM_019635	56274	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0.130000	0.756219	
mm_172675.1	chr8	48070573	48070773	-	1	NA	NA	NA	-28419	NM_001161516	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	0.030000	0.482587	
mm_87637.1	chr10	58351889	58352089	+	1	NA	NA	NA	-19465	NM_201242	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.000000	0.398010	
mm_167789.1	chr9	123104427	123104627	-	1	NA	NA	NA	8678	NM_026917	69035	Mm.28300	NM_026917	ENSMUSG00000025786	Zdhhc3	1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373	zinc finger, DHHC domain containing 3	protein-coding	0.000000	0.532338	
mm_53596.1	chr6	138140451	138140651	+	1	NA	NA	NA	14	NM_019946	56615	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.055000	0.611940	
mm_29281.1	chr3	107667602	107667802	-	1	NA	NA	NA	28846	NM_145542	229709	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	0.020000	0.507463	
mm_159478.1	chr4	34050090	34050290	-	1	NA	NA	NA	-123	NM_026293	67652	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.050000	0.616915	
mm_62923.1	chr7	118597219	118597419	+	1	NA	NA	NA	22	NM_001105252	74424	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	0.040000	0.592040	
mm_40644.1	chr5	64969979	64970179	+	1	NA	NA	NA	4	NM_026667	68303	Mm.258545	NM_026667	ENSMUSG00000029185	Fam114a1	1190001N04Rik|9130005N14Rik|Noxp20	family with sequence similarity 114, member A1	protein-coding	0.120000	0.786070	
mm_120747.1	chr14	73237916	73238116	+	1	NA	NA	NA	125	NM_175116	67168	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.030000	0.492537	
mm_1540.1	chr1	72851990	72852190	+	1	NA	NA	NA	22775	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.040000	0.621891	
mm_97376.1	chr11	77710350	77710550	+	1	NA	NA	NA	14843	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.000000	0.393035	
mm_78427.1	chr9	31280830	31281030	+	1	NA	NA	NA	9529	NM_001101597	638580	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.105000	0.711443	
mm_53839.1	chr6	148354690	148354890	+	1	NA	NA	NA	134	NR_003634	66184	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	0.105000	0.671642	
mm_165057.1	chr19	41900708	41900908	-	1	NA	NA	NA	-4655	NM_199447	107094	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	0.005000	0.472637	15(GCCTCTTAGAGC,-,0.00),16(CCTCTTAGAGCA,+,0.00)
mm_122827.1	chr14	54686526	54686726	-	1	NA	NA	NA	305	NM_001085473	56215	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	0.090000	0.631841	
mm_87094.1	chr10	33083109	33083309	+	1	NA	NA	NA	-274	NM_029726	76757	Mm.338508	NM_029726	ENSMUSG00000019787	Trdn	2310045H21Rik|EG432451|TDN	triadin	protein-coding	0.005000	0.398010	
mm_142720.1	chr17	48146104	48146304	-	1	NA	NA	NA	103	NM_001177897	328829	Mm.466999	NM_177824	ENSMUSG00000073386	9830107B12Rik	Trem5	RIKEN cDNA 9830107B12 gene	protein-coding	0.010000	0.567164	
mm_58142.1	chr6	141946732	141946932	-	1	NA	NA	NA	130	NM_013797	28248	Mm.103665	NM_013797	ENSMUSG00000041698	Slco1a1	A530084B21|OATP-1|Oatp1|Oatp1a1|Slc21a1	solute carrier organic anion transporter family, member 1a1	protein-coding	0.005000	0.412935	
mm_125425.1	chr15	42638726	42638926	+	1	NA	NA	NA	38151	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.000000	0.333333	
mm_62572.1	chr7	104250205	104250405	+	1	NA	NA	NA	5848	NM_030684	94094	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	0.000000	0.348259	
mm_12402.1	chr2	70475862	70476062	+	1	NA	NA	NA	1039	NM_022435	64406	Mm.423397	NM_022435	ENSMUSG00000075304	Sp5	-	trans-acting transcription factor 5	protein-coding	0.085000	0.701493	
mm_129188.1	chr15	76350411	76350611	-	1	NA	NA	NA	599	NM_025340	106025	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	0.085000	0.606965	
mm_96203.1	chr11	62107440	62107640	+	1	NA	NA	NA	30516	NM_001029936	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.005000	0.383085	
mm_4952.1	chr1	191224954	191225154	+	1	NA	NA	NA	-41721	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.025000	0.517413	
mm_79502.1	chr9	57175175	57175375	+	1	NA	NA	NA	0	NR_033784	67319	Mm.234187	NR_033784	ENSMUSG00000100282	1700041C23Rik	-	RIKEN cDNA 1700041C23 gene	ncRNA	0.000000	0.363184	
mm_150638.1	chr19	41691261	41691461	+	1	NA	NA	NA	52495	NM_015748	20562	Mm.39155	NM_015748	ENSMUSG00000025020	Slit1	Slil1|mKIAA0813	slit homolog 1 (Drosophila)	protein-coding	0.020000	0.527363	
mm_136086.1	chr16	84835562	84835762	-	1	NA	NA	NA	-37	NM_001302213	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.120000	0.756219	
mm_162980.1	chr11	20830690	20830890	-	1	NA	NA	NA	318	NM_173752	216551	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.145000	0.766169	
mm_151660.1	chr19	4127176	4127376	-	1	NA	NA	NA	1316	NM_025889	66990	Mm.276255	NM_025889		Tmem134	2410001H17Rik|AI463452	transmembrane protein 134	protein-coding	0.005000	0.542289	
mm_46837.1	chr5	113324231	113324431	-	1	NA	NA	NA	214	NR_106088	102465709		NR_106088	ENSMUSG00000105778	Mir7229	mmu-mir-7229	microRNA 7229	ncRNA	0.085000	0.651741	
mm_105757.1	chr11	109473561	109473761	-	1	NA	NA	NA	-65	NM_001029842	104681	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.100000	0.731343	
mm_124906.1	chr15	10981656	10981856	+	1	NA	NA	NA	0	NM_008537	17117	Mm.2787	NM_008537	ENSMUSG00000022244	Amacr	Macr1	alpha-methylacyl-CoA racemase	protein-coding	0.080000	0.696517	
mm_111895.1	chr12	108639035	108639235	-	1	NA	NA	NA	3382	NM_001163396	14026	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.000000	0.517413	
mm_169098.1	chr1	34113873	34114073	+	1	NA	NA	NA	-3386	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.050000	0.502488	
mm_158248.1	chrX	107403541	107403741	-	1	NA	NA	NA	-281	NM_008409	16431	Mm.193	NM_008409	ENSMUSG00000031239	Itm2a	AW108051|Bricd2a|E25|Itm2	integral membrane protein 2A	protein-coding	0.015000	0.572139	
mm_150210.1	chr19	32815389	32815589	+	1	NA	NA	NA	57912	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.015000	0.442786	
mm_123405.1	chr14	63543786	63543986	-	1	NA	NA	NA	67	NM_177594	210376	Mm.441613	NM_177594	ENSMUSG00000035078	Mtmr9	9430075G12Rik|AA516943|AF073881|LIP-STYX|MTMR8|mMTMH3	myotubularin related protein 9	protein-coding	0.100000	0.706468	
mm_111345.1	chr12	86885773	86885973	-	1	NA	NA	NA	-1059	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.015000	0.442786	
mm_15742.1	chr2	164237235	164237435	+	1	NA	NA	NA	1006	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.427861	
mm_125521.1	chr15	57694847	57695047	+	1	NA	NA	NA	280	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.110000	0.716418	
mm_60704.1	chr7	45217222	45217422	+	1	NA	NA	NA	1569	NM_001285498	21677	Mm.3019	NM_011565	ENSMUSG00000030796	Tead2	ETF|Etdf|TEAD-2|TEF-4|TEF4	TEA domain family member 2	protein-coding	0.050000	0.661692	
mm_111143.1	chr12	81790794	81790994	-	1	NA	NA	NA	-9724	NM_001174107	338372	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.025000	0.522388	
mm_107779.1	chr12	61523048	61523248	+	1	NA	NA	NA	-19	NM_178714	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.140000	0.776119	
mm_8802.1	chr1	161852684	161852884	-	1	NA	NA	NA	23877	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.005000	0.283582	
mm_52053.1	chr6	97222512	97222712	+	1	NA	NA	NA	11820	NM_022992	65106	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	0.025000	0.477612	
mm_64378.1	chr7	142466711	142466911	+	1	NA	NA	NA	-5032	NM_001271508	16985	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.015000	0.437811	
mm_121647.1	chr14	9560794	9560994	-	1	NA	NA	NA	-323201	NR_030680	100042415	Mm.235938	NR_030680		Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.005000	0.432836	
mm_83809.1	chr9	53536663	53536863	-	1	NA	NA	NA	-92	NM_007499	11920	Mm.5088	NM_007499	ENSMUSG00000034218	Atm	AI256621|C030026E19Rik	ataxia telangiectasia mutated	protein-coding	0.100000	0.616915	
mm_64074.1	chr7	140920769	140920969	+	1	NA	NA	NA	-33	NM_133946	101613	Mm.386833	NM_133946	ENSMUSG00000038745	Nlrp6	AI504961|Avr|Nalp6|Navr|Navr/Avr|Non-AVR|Pypaf5	NLR family, pyrin domain containing 6	protein-coding	0.010000	0.457711	
mm_72074.1	chr8	71543095	71543295	+	1	NA	NA	NA	265	NM_028617	73711	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	0.090000	0.681592	
mm_20881.1	chr2	148771396	148771596	-	1	NA	NA	NA	1	NM_030059	78240	Mm.99424	NM_030059	ENSMUSG00000036958	Cst11	9230101F08Rik|BB067629|CRES2|mCSTE1	cystatin 11	protein-coding	0.015000	0.487562	
mm_133983.1	chr16	4559545	4559745	-	1	NA	NA	NA	75	NM_031182	83383	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.090000	0.681592	
mm_85698.1	chr9	108094435	108094635	-	1	NA	NA	NA	-55	NM_146226	235606	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0.085000	0.666667	
mm_120317.1	chr14	63142705	63142905	+	1	NA	NA	NA	20343	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.020000	0.507463	
mm_44212.1	chr5	4104623	4104823	-	1	NA	NA	NA	-26	NM_020010	13121	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	0.120000	0.696517	
mm_148925.1	chr19	6996025	6996225	+	1	NA	NA	NA	-6	NM_153597	107328	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	0.055000	0.592040	
mm_42141.1	chr5	111417218	111417418	+	1	NA	NA	NA	-848	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.125000	0.691542	
mm_113451.1	chr13	35785098	35785298	+	1	NA	NA	NA	43796	NM_001123386	12593	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.005000	0.353234	
mm_138826.1	chr17	39847793	39847993	+	1	NA	NA	NA	4896	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.070000	0.582090	
mm_45552.1	chr5	73132858	73133058	-	1	NA	NA	NA	123660	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.000000	0.288557	
mm_39045.1	chr4	152448678	152448878	-	1	NA	NA	NA	77	NM_001252655	16498	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	0.030000	0.606965	
mm_160992.1	chr11	106365383	106365583	+	1	NA	NA	NA	-9343	NM_029345	75573	Mm.159539	NM_029345	ENSMUSG00000009210	Prr29	2310007L24Rik	proline rich 29	protein-coding	0.030000	0.676617	
mm_16991.1	chr2	18219613	18219813	-	1	NA	NA	NA	155128	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.045000	0.582090	
mm_84017.1	chr9	57653372	57653572	-	1	NA	NA	NA	159	NM_001304761	12988	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.010000	0.552239	
mm_67637.1	chr7	84409882	84410082	-	1	NA	NA	NA	56	NM_007488	11864	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding	0.180000	0.825871	
mm_63114.1	chr7	122671221	122671421	+	1	NA	NA	NA	-423	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.080000	0.572139	
mm_43343.1	chr5	135123647	135123847	+	1	NA	NA	NA	16856	NM_021455	58805	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	0.045000	0.631841	
mm_107723.1	chr12	56695564	56695764	+	1	NA	NA	NA	193	NM_011041	18511	Mm.5035	NM_011041	ENSMUSG00000001497	Pax9	Pax-9	paired box 9	protein-coding	0.045000	0.577114	
mm_167183.1	chr7	141808460	141808660	+	1	NA	NA	NA	19549	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.010000	0.552239	
mm_152069.1	chr19	6542929	6543129	-	1	NA	NA	NA	41	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.005000	0.472637	
mm_88980.1	chr10	81559454	81559654	+	1	NA	NA	NA	110	NM_001276288	14797	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.185000	0.805970	
mm_143022.1	chr17	56554304	56554504	-	1	NA	NA	NA	-17	NR_130128	100504425	Mm.384143	NR_130128	ENSMUSG00000110218	Gm20219	Tincr	predicted gene, 20219	ncRNA	0.045000	0.646766	
mm_129027.1	chr15	74958730	74958930	-	1	NA	NA	NA	3724	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.005000	0.552239	55(GGACCTAAAAGG,-,0.00)
mm_61184.1	chr7	62349347	62349547	+	1	NA	NA	NA	1170	NM_010882	17984	Mm.400253	NM_010882	ENSMUSG00000033585	Ndn	AI528698|Peg6	necdin	protein-coding	0.005000	0.452736	
mm_119562.1	chr14	48878492	48878692	+	1	NA	NA	NA	-281	NR_033783	66770	Mm.136954	NR_033783		4933429O19Rik	1700031B11Rik	RIKEN cDNA 4933429O19 gene	ncRNA	0.005000	0.467662	
mm_91740.1	chr10	47102643	47102843	-	1	NA	NA	NA	857994	NR_028276	108637		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0.005000	0.432836	
mm_157199.1	chrX	12160367	12160567	-	1	NA	NA	NA	-112	NM_001168321	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.075000	0.626866	
mm_145415.1	chr18	58146268	58146468	+	1	NA	NA	NA	63558	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.005000	0.427861	
mm_163318.1	chr12	7853980	7854180	-	1	NA	NA	NA	-123597	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.393035	
mm_41373.1	chr5	90583153	90583353	+	1	NA	NA	NA	22044	NM_001252661	622307	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	0.010000	0.412935	-59(TCTTTTATACTC,+,0.00)
mm_106095.1	chr11	116198669	116198869	-	1	NA	NA	NA	-86	NM_027107	69535	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	0.105000	0.711443	
mm_72873.1	chr8	88693369	88693569	+	1	NA	NA	NA	-3559	NM_001128170	74256	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	0.005000	0.447761	
mm_33494.1	chr4	130823418	130823618	+	1	NA	NA	NA	30981	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.020000	0.522388	
mm_137300.1	chr17	24850453	24850653	+	1	NA	NA	NA	63	NM_024284	14651	Mm.43784	NM_024284	ENSMUSG00000024158	Hagh	BC019817|Glo-2|Glo2|Rsp29	hydroxyacyl glutathione hydrolase	protein-coding	0.080000	0.631841	
mm_143692.1	chr17	80290025	80290225	-	1	NA	NA	NA	-87	NM_194269	378462	Mm.45208	NM_194269	ENSMUSG00000045257	Morn2	Mopt	MORN repeat containing 2	protein-coding	0.085000	0.686567	
mm_87668.1	chr10	58812245	58812445	+	1	NA	NA	NA	-1014	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding	0.080000	0.631841	
mm_79674.1	chr9	59680098	59680298	+	1	NA	NA	NA	23830	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.115000	0.731343	
mm_126691.1	chr15	85017040	85017240	+	1	NA	NA	NA	-1	NM_023478	22270	Mm.46214	NM_023478	ENSMUSG00000022435	Upk3a	1110017C07Rik|UP3a|UPIII|Upk3	uroplakin 3A	protein-coding	0.060000	0.631841	
mm_75402.1	chr8	46208989	46209189	-	1	NA	NA	NA	1920	NM_007450	11739	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	0.030000	0.567164	
mm_11343.1	chr2	30803691	30803891	+	1	NA	NA	NA	-127	NR_028487	73598	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.010000	0.582090	49(TCTTTTAGACCC,+,0.00)
mm_132400.1	chr16	35001232	35001432	+	1	NA	NA	NA	-21089	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.000000	0.477612	
mm_822.1	chr1	46894545	46894745	+	1	NA	NA	NA	-41136	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.015000	0.457711	
mm_19386.1	chr2	91236878	91237078	-	1	NA	NA	NA	88	NM_028119	107986	Mm.389334	NM_028119	ENSMUSG00000002109	Ddb2	2610043A19Rik	damage specific DNA binding protein 2	protein-coding	0.080000	0.656716	
mm_86540.1	chr10	8866499	8866699	+	1	NA	NA	NA	19471	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.010000	0.532338	
mm_86787.1	chr10	20185325	20185525	+	1	NA	NA	NA	16429	NR_045350	73811	Mm.55644	NR_045350	ENSMUSG00000110754	4930405J17Rik	-	RIKEN cDNA 4930405J17 gene	ncRNA	0.020000	0.557214	
mm_20967.1	chr2	151972854	151973054	-	1	NA	NA	NA	440	NM_001289151	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.010000	0.567164	
mm_154125.1	chr19	57239183	57239383	-	1	NA	NA	NA	-23251	NM_178688	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.020000	0.582090	
mm_26011.1	chr3	135307631	135307831	+	1	NA	NA	NA	31	NM_178877	97086	Mm.441764	NM_178877	ENSMUSG00000037994	Slc9b2	C80638|NHA2|NHE10|Nhedc2|nha-oc|nhaoc	solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2	protein-coding	0.060000	0.631841	
mm_74111.1	chr8	123041281	123041481	+	1	NA	NA	NA	903	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.110000	0.761194	
mm_50027.1	chr6	41121909	41122109	+	1	NA	NA	NA	-86500	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.417910	
mm_131978.1	chr16	25011103	25011303	+	1	NA	NA	NA	-48436	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.005000	0.368159	
mm_59862.1	chr7	30099486	30099686	+	1	NA	NA	NA	4510	NM_011981	26466	Mm.195092	NM_011981	ENSMUSG00000049421	Zfp260	AI480997|Ozrf1|PEX1|Zfp63|Znf260	zinc finger protein 260	protein-coding	0.045000	0.522388	
mm_29074.1	chr3	103862540	103862740	-	1	NA	NA	NA	2363	NM_008979	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.010000	0.462687	
mm_99433.1	chr11	102430393	102430593	+	1	NA	NA	NA	171	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.050000	0.616915	
mm_108873.1	chr12	99645140	99645340	+	1	NA	NA	NA	-17266	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.125000	0.696517	
mm_30811.1	chr4	20042062	20042262	+	1	NA	NA	NA	110	NM_010281	14590	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0.095000	0.646766	
mm_69355.1	chr7	130462600	130462800	-	1	NA	NA	NA	56880	NM_001136054	11907	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0.000000	0.243781	
mm_86532.1	chr10	7832414	7832614	+	1	NA	NA	NA	44	NM_172785	237256	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	0.015000	0.606965	
mm_55965.1	chr6	85513489	85513689	-	1	NA	NA	NA	-47	NM_020596	13656	Mm.44137	NM_020596	ENSMUSG00000071341	Egr4	NGF1-C|NGFI-C|NGFIC|pAT133	early growth response 4	protein-coding	0.080000	0.721393	-32(AGCTATATAAGT,-,0.00)
mm_169283.1	chr13	97099226	97099426	-	1	NA	NA	NA	27683	NM_001100458	320557	Mm.458280	NM_001100458	ENSMUSG00000041817	Fam169a	B230112C05Rik|SLAP75	family with sequence similarity 169, member A	protein-coding	0.050000	0.497512	
mm_85684.1	chr9	107872735	107872935	-	1	NA	NA	NA	-16	NM_029169	19654	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	0.110000	0.681592	
mm_33652.1	chr4	133068171	133068371	+	1	NA	NA	NA	56765	NM_146155	230793	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.000000	0.378109	
mm_153799.1	chr19	46039349	46039549	-	1	NA	NA	NA	172	NM_010697	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.060000	0.676617	
mm_169140.1	chr13	62006534	62006734	+	1	NA	NA	NA	-123256	NM_001039239	630579	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 80	protein-coding	0.020000	0.497512	
mm_154950.1	chrX	36598107	36598307	+	1	NA	NA	NA	14	NM_016783	53328	Mm.9052	NM_016783	ENSMUSG00000006373	Pgrmc1	AA415812|HPR6.6|PPMR|Vema	progesterone receptor membrane component 1	protein-coding	0.085000	0.671642	-72(GGGCTTATAGGC,-,0.00),-70(GCTTATAGGCTC,+,0.00)
mm_34408.1	chr4	145241861	145242061	+	1	NA	NA	NA	4909	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.005000	0.363184	
mm_10338.1	chr2	11645400	11645600	+	1	NA	NA	NA	2708	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.005000	0.427861	
mm_19998.1	chr2	118728504	118728704	-	1	NA	NA	NA	-166	NM_001290790	18796	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	0.010000	0.631841	
mm_96061.1	chr11	59566394	59566594	+	1	NA	NA	NA	5244	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.020000	0.532338	
mm_86487.1	chr10	5185181	5185381	+	1	NA	NA	NA	9426	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.010000	0.502488	
mm_153632.1	chr19	44021669	44021869	-	1	NA	NA	NA	7478	NM_001001446	226143	Mm.329866	NM_001001446	ENSMUSG00000025197	Cyp2c44	AW107714|BC034834|b2b386Clo	cytochrome P450, family 2, subfamily c, polypeptide 44	protein-coding	0.010000	0.437811	
mm_75628.1	chr8	64692887	64693087	-	1	NA	NA	NA	122	NM_013494	12876	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|R74677|fat	carboxypeptidase E	protein-coding	0.105000	0.721393	
mm_98056.1	chr11	85821855	85822055	+	1	NA	NA	NA	10433	NR_077059	69909	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.015000	0.472637	
mm_38107.1	chr4	134517807	134518007	-	1	NA	NA	NA	6908	NM_001081099	69885	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	0.020000	0.482587	
mm_111636.1	chr12	102623291	102623491	-	1	NA	NA	NA	61629	NR_035457	100316812		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.020000	0.547264	
mm_12491.1	chr2	71786834	71787034	+	1	NA	NA	NA	-5	NM_008397	16403	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	0.125000	0.741294	
mm_144585.1	chr18	31954751	31954951	+	1	NA	NA	NA	-5215	NM_001025381	574402	Mm.391108	NM_001025381	ENSMUSG00000052229	Gpr17	AI853548	G protein-coupled receptor 17	protein-coding	0.020000	0.572139	
mm_35610.1	chr4	43383227	43383427	-	1	NA	NA	NA	1345	NM_001037709	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.010000	0.497512	-29(GACCATAAATAG,-,0.00)
mm_151106.1	chr19	47863281	47863481	+	1	NA	NA	NA	-2164	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.005000	0.402985	
mm_12746.1	chr2	79126574	79126774	+	1	NA	NA	NA	-128752	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.015000	0.383085	
mm_103206.1	chr11	70652796	70652996	-	1	NA	NA	NA	1754	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.030000	0.507463	
mm_163030.1	chr11	51644227	51644427	+	1	NA	NA	NA	-6627	NR_027958	97775	Mm.220299	NM_175289	ENSMUSG00000052563	D930048N14Rik	AI315703|R75254	RIKEN cDNA D930048N14 gene	ncRNA	0.040000	0.631841	
mm_87772.1	chr10	60294489	60294689	+	1	NA	NA	NA	10128	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.020000	0.572139	
mm_33515.1	chr4	130928583	130928783	+	1	NA	NA	NA	15349	NM_010686	16792	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3	lysosomal-associated protein transmembrane 5	protein-coding	0.030000	0.582090	
mm_86601.1	chr10	13500958	13501158	+	1	NA	NA	NA	30	NM_025799	66848	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0.035000	0.582090	
mm_38050.1	chr4	133984732	133984932	-	1	NA	NA	NA	16032	NM_026144	67422	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	0.000000	0.378109	
mm_120700.1	chr14	70941794	70941994	+	1	NA	NA	NA	51787	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.005000	0.527363	
mm_162252.1	chrX	164497777	164497977	+	1	NA	NA	NA	-26	NM_027027	69299	Mm.79031	NM_027027	ENSMUSG00000031384	Asb9	1700011M07Rik	ankyrin repeat and SOCS box-containing 9	protein-coding	0.010000	0.447761	
mm_143414.1	chr17	70834714	70834914	-	1	NA	NA	NA	11963	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.050000	0.542289	
mm_113529.1	chr13	37826724	37826924	+	1	NA	NA	NA	-88	NM_001177868	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.090000	0.616915	
mm_5379.1	chr1	30949657	30949857	-	1	NA	NA	NA	-2	NM_011200	19243	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	0.150000	0.756219	-33(GGCTATAAAGGG,-,0.00)
mm_93855.1	chr10	122096367	122096567	-	1	NA	NA	NA	635	NM_153059	216395	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	0.010000	0.338308	
mm_154082.1	chr19	56617613	56617813	-	1	NA	NA	NA	69452	NM_025811	66866	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.000000	0.487562	
mm_98012.1	chr11	84525581	84525781	+	1	NA	NA	NA	21	NR_038057	78365	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	0.105000	0.636816	
mm_47217.1	chr5	121010006	121010206	-	1	NA	NA	NA	-14	NM_001302344	19894	Mm.181166	NM_011286	ENSMUSG00000029608	Rph3a	2900002P20Rik|AU022689|AW108370	rabphilin 3A	protein-coding	0.020000	0.507463	
mm_158279.1	chrX	111531070	111531270	-	1	NA	NA	NA	6789	NM_025949	67071	Mm.37617	NM_025949	ENSMUSG00000025665	Rps6ka6	2610524K04Rik|RSK4|S6K-alpha-6	ribosomal protein S6 kinase polypeptide 6	protein-coding	0.010000	0.398010	-39(CTCTTTAAAAGC,-,0.00),-38(TCTTTAAAAGCA,+,0.00)
mm_139154.1	chr17	47540351	47540551	+	1	NA	NA	NA	35400	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.010000	0.472637	
mm_84231.1	chr9	61990626	61990826	-	1	NA	NA	NA	36064	NM_028748	74090	Mm.273267	NM_028748	ENSMUSG00000032278	Paqr5	0610010I15Rik|AV002411|BB115488|mPRg	progestin and adipoQ receptor family member V	protein-coding	0.000000	0.378109	
mm_18387.1	chr2	60125492	60125692	-	1	NA	NA	NA	148	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.065000	0.562189	
mm_106998.1	chr12	11279541	11279741	+	1	NA	NA	NA	13755	NM_025695	67241	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	0.010000	0.363184	
mm_157327.1	chrX	23296307	23296507	-	1	NA	NA	NA	-10848	NM_001290476	67455	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	0.010000	0.432836	
mm_166350.1	chr5	119684438	119684638	+	1	NA	NA	NA	6680	NR_040416	433944	Mm.491053	NR_040416	ENSMUSG00000086847	Tbx3os2	Gm16065|OTTMUSG00000029666	T-box 3, opposite strand 2	ncRNA	0.010000	0.323383	
mm_157114.1	chrX	9438227	9438427	-	1	NA	NA	NA	30997	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.025000	0.487562	
mm_104587.1	chr11	97026042	97026242	-	1	NA	NA	NA	276	NR_133649	100127433	Mm.156282	NR_133649	ENSMUSG00000087067	Gm11532	OTTMUSG00000001860|Sp6os	predicted gene 11532	ncRNA	0.040000	0.542289	
mm_15453.1	chr2	157423829	157424029	+	1	NA	NA	NA	-364	NM_009271	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.025000	0.522388	
mm_90961.1	chr10	13324132	13324332	-	1	NA	NA	NA	-72	NM_001033257	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.150000	0.776119	
mm_113197.1	chr13	24943452	24943652	+	1	NA	NA	NA	400	NM_008156	14756	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0.020000	0.502488	
mm_85499.1	chr9	106158038	106158238	-	1	NA	NA	NA	0	NM_001039586	235582	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	0.015000	0.542289	
mm_147695.1	chr18	60748915	60749115	-	1	NA	NA	NA	-25581	NM_020600	20044	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.040000	0.641791	
mm_140975.1	chr17	24696421	24696621	-	1	NA	NA	NA	287	NM_027988	71893	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	0.085000	0.601990	
mm_63061.1	chr7	122067326	122067526	+	1	NA	NA	NA	228	NM_138589	28018	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	0.085000	0.661692	
mm_30016.1	chr3	135665144	135665344	-	1	NA	NA	NA	26303	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.005000	0.388060	
mm_23515.1	chr3	60567457	60567657	+	1	NA	NA	NA	66378	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.318408	
mm_87911.1	chr10	62338808	62339008	+	1	NA	NA	NA	1513	NM_001146100	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.020000	0.577114	
mm_1034.1	chr1	58756174	58756374	+	1	NA	NA	NA	25722	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.015000	0.512438	
mm_124989.1	chr15	21489730	21489930	+	1	NA	NA	NA	378378	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.000000	0.293532	
mm_139855.1	chr17	69969097	69969297	+	1	NA	NA	NA	124	NM_001347411	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.145000	0.786070	
mm_31838.1	chr4	73790828	73791028	+	1	NA	NA	NA	-316	NR_046042	667768	Mm.244966	NR_046041	ENSMUSG00000085034	Gm11240	OTTMUSG00000000286	predicted gene 11240	ncRNA	0.145000	0.731343	
mm_111140.1	chr12	81765029	81765229	-	1	NA	NA	NA	16041	NM_177395	338372	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.005000	0.343284	
mm_86260.1	chr9	121591974	121592174	-	1	NA	NA	NA	5054	NR_040740	75384	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	0.005000	0.462687	
mm_64768.1	chr7	4971759	4971959	-	1	NA	NA	NA	-898	NM_001200041	381835	Mm.297828	NM_001200041	ENSMUSG00000085272	Sbk3	Gm1078|Sgk110	SH3 domain binding kinase family, member 3	protein-coding	0.010000	0.547264	
mm_43620.1	chr5	138161000	138161200	+	1	NA	NA	NA	-2	NM_012002	26893	Mm.3981	NM_012002	ENSMUSG00000019494	Cops6	Sgn3|VIP/MOV34	COP9 signalosome subunit 6	protein-coding	0.095000	0.681592	
mm_26883.1	chr3	17786740	17786940	-	1	NA	NA	NA	-3081	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.070000	0.671642	
mm_173292.1	chrY	37699487	37699687	-	1	NA	NA	NA	-258224	NM_001160143	100040031	Mm.463839	NM_001160143	ENSMUSG00000093950	Gm20823	-	predicted gene, 20823	protein-coding	0.010000	0.407960	
mm_164079.1	chr14	122712089	122712289	+	1	NA	NA	NA	177861	NM_144844	110821	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.005000	0.363184	-25(TTCTATAAAAAA,-,0.00)
mm_62392.1	chr7	101052863	101053063	+	1	NA	NA	NA	-40910	NM_001302346	18442	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0.005000	0.417910	
mm_151213.1	chr19	53623068	53623268	+	1	NA	NA	NA	22772	NM_007790	13006	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.010000	0.437811	
mm_119396.1	chr14	41137779	41137979	+	1	NA	NA	NA	6091	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.000000	0.462687	-77(CTTCTTATGGGC,+,0.00)
mm_67190.1	chr7	73940427	73940627	-	1	NA	NA	NA	73155	NM_009181	20450	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0.000000	0.477612	
mm_20550.1	chr2	131068911	131069111	-	1	NA	NA	NA	-5197	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.015000	0.447761	
mm_61223.1	chr7	64501567	64501767	+	1	NA	NA	NA	-39	NM_007461	11784	Mm.4657	NM_007461	ENSMUSG00000030519	Apba2	X11-like|X11L|XllL|mXllL	amyloid beta (A4) precursor protein-binding, family A, member 2	protein-coding	0.075000	0.716418	
mm_68849.1	chr7	126369306	126369506	-	1	NA	NA	NA	162	NM_010689	16797	Mm.10280	NM_010689	ENSMUSG00000030742	Lat	p36-38|pp36	linker for activation of T cells	protein-coding	0.045000	0.661692	
mm_109141.1	chr12	106585773	106585973	+	1	NA	NA	NA	130451	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.015000	0.482587	
mm_13232.1	chr2	97630708	97630908	+	1	NA	NA	NA	163151	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.020000	0.442786	
mm_3402.1	chr1	143777195	143777395	+	1	NA	NA	NA	17	NM_019562	56207	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0.130000	0.721393	
mm_138629.1	chr17	35841785	35841985	+	1	NA	NA	NA	387	NM_001010833	240087	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	0.045000	0.527363	
mm_61085.1	chr7	51622316	51622516	+	1	NA	NA	NA	586	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.045000	0.567164	
mm_113301.1	chr13	30748618	30748818	+	1	NA	NA	NA	-515	NM_001347508	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.040000	0.437811	-32(GCTTATAAACTT,+,0.00)
mm_171654.1	chr4	40723943	40724143	+	1	NA	NA	NA	1113	NM_001164672	15502	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0.010000	0.412935	
mm_139032.1	chr17	46162998	46163198	+	1	NA	NA	NA	2066	NM_001145979	56055	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.025000	0.507463	
mm_173255.1	chrX	94702896	94703096	-	1	NA	NA	NA	-21573	NM_001081473	668166	Mm.426145	NM_001081473	ENSMUSG00000073062	Zxdb	Zxda	zinc finger, X-linked, duplicated B	protein-coding	0.015000	0.472637	
mm_55890.1	chr6	83536123	83536323	-	1	NA	NA	NA	28	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.020000	0.517413	-74(GCCTTTTTAGGG,-,0.00),-72(CTTTTTAGGGAC,+,0.00)
mm_25920.1	chr3	131156364	131156564	+	1	NA	NA	NA	43673	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.020000	0.472637	-44(CAGTTTTAAAGA,-,0.00)
mm_75543.1	chr8	57487596	57487796	-	1	NA	NA	NA	164	NM_021788	60406	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	0.085000	0.666667	
mm_126656.1	chr15	84192197	84192397	+	1	NA	NA	NA	64	NM_178614	68653	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0.075000	0.666667	
mm_68762.1	chr7	121589759	121589959	-	1	NA	NA	NA	-23	NR_102286	75793	Mm.23397	NR_102286		4933432K03Rik	1700001C18Rik|4930433G11Rik|AI428127	RIKEN cDNA 4933432K03 gene	ncRNA	0.025000	0.507463	
mm_103299.1	chr11	72502344	72502544	-	1	NA	NA	NA	-12524	NM_153060	216892	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0.015000	0.517413	
mm_156232.1	chrX	135885779	135885979	+	1	NA	NA	NA	28	NM_198161	70237	Mm.440847	NM_198161	ENSMUSG00000072964	Bhlhb9	2700087I09Rik	basic helix-loop-helix domain containing, class B9	protein-coding	0.080000	0.681592	
mm_147750.1	chr18	61196452	61196652	-	1	NA	NA	NA	15044	NM_007885	13521	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	0.005000	0.432836	
mm_144569.1	chr18	31780625	31780825	+	1	NA	NA	NA	-8434	NM_027002	69241	Mm.279898	NM_027002	ENSMUSG00000024258	Polr2d	2310002G05Rik|2610028L19Rik|HSRBP4|RBP4	polymerase (RNA) II (DNA directed) polypeptide D	protein-coding	0.020000	0.507463	
mm_152978.1	chr19	29486897	29487097	-	1	NA	NA	NA	34990	NR_015567	77779	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.015000	0.492537	
mm_149001.1	chr19	8664307	8664507	+	1	NA	NA	NA	402	NM_001112697	12669	Mm.240607	NM_007698	ENSMUSG00000032773	Chrm1	Chrm-1|M1|M1R	cholinergic receptor, muscarinic 1, CNS	protein-coding	0.025000	0.646766	
mm_146646.1	chr18	11048576	11048776	-	1	NA	NA	NA	-3834	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.075000	0.562189	
mm_72123.1	chr8	71690124	71690324	+	1	NA	NA	NA	972	NM_013564	16336	Mm.476857	NM_013564	ENSMUSG00000079019	Insl3	Rlf|Rlnl	insulin-like 3	protein-coding	0.065000	0.646766	
mm_172488.1	chr7	53805750	53805950	-	1	NA	NA	NA	86039	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0.020000	0.512438	-31(GGGTATTTAAGG,-,0.00)
mm_55714.1	chr6	73138849	73139049	-	1	NA	NA	NA	82682	NM_001164669	330355	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0.005000	0.527363	
mm_5929.1	chr1	55248581	55248781	-	1	NA	NA	NA	11504	NM_175439	212679	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.005000	0.323383	
mm_117452.1	chr13	74808466	74808666	-	1	NA	NA	NA	194	NM_001301153	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.080000	0.681592	
mm_117178.1	chr13	63324919	63325119	-	1	NA	NA	NA	-23736	NR_037235	100526474		NR_037235	ENSMUSG00000092741	Mir3074-1	mmu-mir-3074-1	microRNA 3074-1	ncRNA	0.000000	0.507463	
mm_71720.1	chr8	61951929	61952129	+	1	NA	NA	NA	23942	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.010000	0.338308	
mm_141700.1	chr17	33996394	33996594	-	1	NA	NA	NA	3839	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.010000	0.507463	
mm_157152.1	chrX	9462679	9462879	-	1	NA	NA	NA	6545	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.015000	0.432836	27(ACTTTAATAGCA,+,0.00)
mm_156815.1	chrX	164119919	164120119	+	1	NA	NA	NA	-19323	NM_001130513	70008	Mm.13451	NM_027286	ENSMUSG00000015405	Ace2	2010305L05Rik	angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	protein-coding	0.000000	0.358209	
mm_126583.1	chr15	82293856	82294056	+	1	NA	NA	NA	-5028	NM_029066	74716	Mm.159315	NM_029066	ENSMUSG00000022455	Wbp2nl	4930521I23Rik|PAWP	WBP2 N-terminal like	protein-coding	0.000000	0.422886	32(AACTTTAAAAGA,-,0.00)
mm_29915.1	chr3	131489652	131489852	-	1	NA	NA	NA	-75016	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.040000	0.577114	
mm_13960.1	chr2	121363566	121363766	+	1	NA	NA	NA	5025	NM_009897	12716	Mm.252145	NM_009897	ENSMUSG00000000308	Ckmt1	Mt-CK|ScCKmit|UbCKmit|mi-CK	creatine kinase, mitochondrial 1, ubiquitous	protein-coding	0.010000	0.492537	
mm_111876.1	chr12	108003553	108003753	-	1	NA	NA	NA	-239	NM_021399	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.030000	0.487562	
mm_91716.1	chr10	44458477	44458677	-	1	NA	NA	NA	171	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.100000	0.646766	-34(CCGTAGAAAAGG,-,0.00)
mm_162842.1	chr10	85927880	85928080	+	1	NA	NA	NA	-511	NM_001163614	67341	Mm.382315	NM_001163614	ENSMUSG00000085111	Ascl4	1700054F16Rik|bHLHa44	achaete-scute family bHLH transcription factor 4	protein-coding	0.030000	0.507463	
mm_68057.1	chr7	101837704	101837904	-	1	NA	NA	NA	20	NM_001122739	16332	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0.140000	0.756219	
mm_33195.1	chr4	126273863	126274063	+	1	NA	NA	NA	11558	NM_013718	27096	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	0.030000	0.562189	
mm_89032.1	chr10	82707862	82708062	+	1	NA	NA	NA	8955	NM_001081218	67933	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838	host cell factor C2	protein-coding	0.000000	0.378109	
mm_119258.1	chr14	33940978	33941178	+	1	NA	NA	NA	39	NM_019506	12165	Mm.422844	NM_019506	ENSMUSG00000072625	Gdf2	Bmp9	growth differentiation factor 2	protein-coding	0.020000	0.601990	
mm_4069.1	chr1	166130374	166130574	+	1	NA	NA	NA	14	NM_021610	59290	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197	glycoprotein A33 (transmembrane)	protein-coding	0.010000	0.616915	
mm_24823.1	chr3	95650828	95651028	+	1	NA	NA	NA	-7793	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.010000	0.547264	
mm_114244.1	chr13	56625643	56625843	+	1	NA	NA	NA	16140	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.030000	0.542289	
mm_59174.1	chr7	24445694	24445894	+	1	NA	NA	NA	-112	NM_199013	210145	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.005000	0.562189	
mm_29931.1	chr3	131491343	131491543	-	1	NA	NA	NA	-73325	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.005000	0.398010	
mm_93137.1	chr10	92162936	92163136	-	1	NA	NA	NA	2142	NR_028262	110333	Mm.429764	NR_028262		Rmst	100041799|AI853140|C230053E11Rik|D930049J19Rik|Dmt2|Gm3515|M2|Ncrms	rhabdomyosarcoma 2 associated transcript (non-coding RNA)	ncRNA	0.020000	0.383085	
mm_67447.1	chr7	80391133	80391333	-	1	NA	NA	NA	-3287	NM_010194	14159	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.025000	0.572139	
mm_20807.1	chr2	144331261	144331461	-	1	NA	NA	NA	1	NM_152947	107586	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0.110000	0.656716	
mm_54728.1	chr6	40585697	40585897	-	1	NA	NA	NA	8	NM_021364	23845	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	0.020000	0.482587	
mm_11030.1	chr2	26912750	26912950	+	1	NA	NA	NA	2043	NM_013721	27176	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	0.015000	0.487562	
mm_169987.1	chr17	15041520	15041720	+	1	NA	NA	NA	8	NM_001039552	381062	Mm.393767	NM_183133	ENSMUSG00000036552	Ermard	2210404J11Rik|2410011O22Rik|AI448938	ER membrane associated RNA degradation	protein-coding	0.110000	0.681592	
mm_133037.1	chr16	57353178	57353378	+	1	NA	NA	NA	1	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.030000	0.497512	
mm_21424.1	chr2	158211690	158211890	-	1	NA	NA	NA	17434	NM_001131021	228846	Mm.187574	NM_177657	ENSMUSG00000037813	D630003M21Rik	-	RIKEN cDNA D630003M21 gene	protein-coding	0.010000	0.507463	
mm_70331.1	chr8	4493328	4493528	+	1	NA	NA	NA	23	NM_026058	67260	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0.065000	0.641791	
mm_14676.1	chr2	139545919	139546119	+	1	NA	NA	NA	52099	NM_175467	228677	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	0.005000	0.348259	
mm_8321.1	chr1	144954701	144954901	-	1	NA	NA	NA	-179380	NM_022881	64214	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	0.020000	0.477612	
mm_109775.1	chr12	118851140	118851340	+	1	NA	NA	NA	4911	NM_177082	320145	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.020000	0.353234	
mm_129605.1	chr15	79893027	79893227	-	1	NA	NA	NA	11	NR_030675	109361	Mm.394656	NR_030675		D730005E14Rik	-	RIKEN cDNA D730005E14 gene	ncRNA	0.010000	0.492537	
mm_87667.1	chr10	58696640	58696840	+	1	NA	NA	NA	-5	NR_033565	103505	Mm.50261	NR_033565		BB019430	-	expressed sequence BB019430	ncRNA	0.005000	0.452736	
mm_23710.1	chr3	68869476	68869676	+	1	NA	NA	NA	-10	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.155000	0.796020	
mm_39676.1	chr5	25529751	25529951	+	1	NA	NA	NA	-167	NR_027388	73571	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0.100000	0.711443	
mm_61981.1	chr7	90954638	90954838	+	1	NA	NA	NA	-136048	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.303483	-26(GTCTATATAAGG,-,0.00),-24(CTATATAAGGCC,+,0.00)
mm_25175.1	chr3	103171620	103171820	+	1	NA	NA	NA	9	NM_026602	68183	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0.100000	0.616915	
mm_84122.1	chr9	58556047	58556247	-	1	NA	NA	NA	-15207	NM_133983	102657	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.015000	0.417910	
mm_82255.1	chr9	4796078	4796278	-	1	NA	NA	NA	56	NM_001113180	14802	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.090000	0.686567	
mm_81025.1	chr9	104566601	104566801	+	1	NA	NA	NA	-3087	NM_028719	74020	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	0.010000	0.527363	
mm_87278.1	chr10	41893873	41894073	+	1	NA	NA	NA	6534	NM_001013370	140742	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.005000	0.437811	
mm_126939.1	chr15	91899279	91899479	+	1	NA	NA	NA	61051	NM_198927	223809	Mm.486225	NM_198927	ENSMUSG00000047295	Smgc	2310010P21Rik|DXImx49e|Muc19|Muc19/Smgc|Sfc21	submandibular gland protein C	protein-coding	0.040000	0.507463	
mm_15784.1	chr2	164403111	164403311	+	1	NA	NA	NA	17	NM_009036	19668	Mm.473794	NM_009036	ENSMUSG00000017007	Rbpjl	RBP-L|Rbpsuhl	recombination signal binding protein for immunoglobulin kappa J region-like	protein-coding	0.045000	0.601990	
mm_65462.1	chr7	25471846	25472046	-	1	NA	NA	NA	5679	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.020000	0.482587	54(CCCTATTAAGAG,-,0.00)
mm_163447.1	chr12	87109228	87109428	+	1	NA	NA	NA	-6789	NM_001294308	64242	Mm.41395	NM_022414	ENSMUSG00000021032	Ngb	-	neuroglobin	protein-coding	0.005000	0.537313	
mm_111455.1	chr12	98385832	98386032	-	1	NA	NA	NA	117297	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.000000	0.457711	
mm_55889.1	chr6	83535931	83536131	-	1	NA	NA	NA	220	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.010000	0.532338	
mm_79817.1	chr9	64321603	64321803	+	1	NA	NA	NA	18754	NM_172519	213550	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	0.020000	0.472637	
mm_133579.1	chr16	91406965	91407165	+	1	NA	NA	NA	830	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.015000	0.497512	
mm_56559.1	chr6	101256726	101256926	-	1	NA	NA	NA	121071	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.000000	0.368159	
mm_140496.1	chr17	3557691	3557891	-	1	NA	NA	NA	-33	NR_045303	68230	Mm.431352	NR_045302		1700102H20Rik	-	RIKEN cDNA 1700102H20 gene	ncRNA	0.065000	0.626866	
mm_163115.1	chr11	73085193	73085393	+	1	NA	NA	NA	-5302	NM_172944	16407	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	0.015000	0.472637	
mm_93332.1	chr10	99461493	99461693	-	1	NA	NA	NA	-147578	NR_038019	100504202	Mm.403801	NR_038019		Gm20110	-	predicted gene, 20110	ncRNA	0.020000	0.432836	
mm_33317.1	chr4	129080400	129080600	+	1	NA	NA	NA	22229	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.025000	0.547264	
mm_72646.1	chr8	84708535	84708735	+	1	NA	NA	NA	7178	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.015000	0.412935	
mm_55640.1	chr6	72345027	72345227	-	1	NA	NA	NA	48	NM_138592	28035	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	0.110000	0.661692	
mm_146553.1	chr18	6222747	6222947	-	1	NA	NA	NA	18677	NM_008448	16573	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.020000	0.343284	
mm_90317.1	chr10	127063527	127063727	+	1	NA	NA	NA	24	NM_009870	12567	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	0.100000	0.711443	
mm_13911.1	chr2	120501221	120501421	+	1	NA	NA	NA	24412	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.030000	0.572139	
mm_145350.1	chr18	56503789	56503989	+	1	NA	NA	NA	-34250	NR_106160	102465790		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	0.030000	0.462687	
mm_127735.1	chr15	103297790	103297990	+	1	NA	NA	NA	12548	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.025000	0.512438	-66(CAGTTTAAAAGA,-,0.00)
mm_109625.1	chr12	112766686	112766886	+	1	NA	NA	NA	6131	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.015000	0.527363	
mm_32610.1	chr4	112232170	112232370	+	1	NA	NA	NA	25	NM_177578	195564	Mm.259652	NM_177578	ENSMUSG00000070868	Skint3	A430090E18Rik|Skint-3	selection and upkeep of intraepithelial T cells 3	protein-coding	0.000000	0.358209	
mm_148757.1	chr19	6061106	6061306	+	1	NA	NA	NA	-1	NM_013859	29805	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	0.095000	0.651741	
mm_925.1	chr1	55204808	55205008	+	1	NA	NA	NA	21874	NM_028713	74013	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	0.015000	0.402985	
mm_132715.1	chr16	43506970	43507170	+	1	NA	NA	NA	-86874	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.020000	0.422886	
mm_135008.1	chr16	32247066	32247266	-	1	NA	NA	NA	-61	NM_001185162	68980	Mm.159860	NM_026898	ENSMUSG00000022787	Wdr53	1500002B03Rik|AI848860	WD repeat domain 53	protein-coding	0.125000	0.696517	
mm_56989.1	chr6	120822594	120822794	-	1	NA	NA	NA	-9	NM_007510	11973	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|E2|P31|Vma4	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	0.065000	0.562189	-39(GGGTTTATAAAG,-,0.00),-37(GTTTATAAAGTA,+,0.00)
mm_6509.1	chr1	74304297	74304497	-	1	NA	NA	NA	-61	NM_027154	69660	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.040000	0.467662	
mm_148244.1	chr18	80673758	80673958	-	1	NA	NA	NA	34315	NM_001164111	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.025000	0.472637	
mm_17590.1	chr2	30556500	30556700	-	1	NA	NA	NA	-38444	NM_030137	78617	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.015000	0.606965	
mm_113584.1	chr13	40886841	40887041	+	1	NA	NA	NA	183	NM_008105	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.035000	0.552239	-93(TCTTTTAGATCC,+,0.00)
mm_25713.1	chr3	122690655	122690855	+	1	NA	NA	NA	-38403	NM_153422	242202	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	0.025000	0.542289	-33(GGATATTAAAGG,-,0.00)
mm_43911.1	chr5	144256045	144256245	+	1	NA	NA	NA	920	NM_018772	55950	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.030000	0.547264	
mm_19233.1	chr2	84710776	84710976	-	1	NA	NA	NA	4288	NM_144887	228136	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0.005000	0.502488	-42(CCTTTTAGGTGC,+,0.00)
mm_121287.1	chr14	105258592	105258792	+	1	NA	NA	NA	19	NM_001190989	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.135000	0.726368	
mm_23303.1	chr3	52648050	52648250	+	1	NA	NA	NA	-91574	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	0.010000	0.487562	
mm_150359.1	chr19	34649049	34649249	+	1	NA	NA	NA	8260	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.005000	0.388060	
mm_35676.1	chr4	43653472	43653672	-	1	NA	NA	NA	22	NM_001290462	433700	Mm.331569	NM_001007463	ENSMUSG00000066196	Spag8	MH-SPAG8|SMP-1	sperm associated antigen 8	protein-coding	0.070000	0.597015	
mm_11456.1	chr2	32162941	32163141	+	1	NA	NA	NA	11893	NM_001159634	227723	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0.020000	0.547264	
mm_90502.1	chr10	128035530	128035730	+	1	NA	NA	NA	284	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.105000	0.656716	
mm_45232.1	chr5	53594136	53594336	-	1	NA	NA	NA	3750	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.010000	0.482587	
mm_37330.1	chr4	119539914	119540114	-	1	NA	NA	NA	353	NM_172699	230700	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	0.160000	0.845771	
mm_152389.1	chr19	10462210	10462410	-	1	NA	NA	NA	-4863	NM_001111140	278795	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0.035000	0.587065	
mm_66157.1	chr7	31151302	31151502	-	1	NA	NA	NA	-352	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.010000	0.547264	
mm_36337.1	chr4	72198990	72199190	-	1	NA	NA	NA	1803	NM_011599	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.055000	0.507463	
mm_14109.1	chr2	125791601	125791801	+	1	NA	NA	NA	-8831	NM_177608	70354	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.020000	0.527363	
mm_57007.1	chr6	121110037	121110237	-	1	NA	NA	NA	20885	NM_001270475	194401	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0.145000	0.805970	
mm_129773.1	chr15	82790988	82791188	-	1	NA	NA	NA	3157	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.055000	0.507463	
mm_153437.1	chr19	40976982	40977182	-	1	NA	NA	NA	17453	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.005000	0.442786	
mm_55334.1	chr6	56362017	56362217	-	1	NA	NA	NA	275	NM_001159952	18575	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0.035000	0.542289	
mm_165462.1	chr2	160364789	160364989	-	1	NA	NA	NA	2176	NM_010658	16658	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.045000	0.482587	
mm_145088.1	chr18	42518984	42519184	+	1	NA	NA	NA	7597	NR_110344	56070	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	0.010000	0.417910	
mm_102502.1	chr11	60695783	60695983	-	1	NA	NA	NA	-3807	NM_001159405	16897	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	lethal giant larvae homolog 1 (Drosophila)	protein-coding	0.010000	0.492537	-38(GGCCATATAAGG,-,0.00)
mm_146926.1	chr18	31949628	31949828	-	1	NA	NA	NA	-92	NM_001025381	574402	Mm.391108	NM_001025381	ENSMUSG00000052229	Gpr17	AI853548	G protein-coupled receptor 17	protein-coding	0.015000	0.587065	
mm_57155.1	chr6	122732312	122732512	-	1	NA	NA	NA	10333	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.015000	0.522388	
mm_41497.1	chr5	92323742	92323942	+	1	NA	NA	NA	4237	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.015000	0.383085	
mm_106458.1	chr11	120020136	120020336	-	1	NA	NA	NA	-5374	NR_029767	723844		NR_029767	ENSMUSG00000065600	Mir338	Mirn338|mir-338|mmu-mir-338	microRNA 338	ncRNA	0.015000	0.606965	
mm_114726.1	chr13	83715257	83715457	+	1	NA	NA	NA	-12749	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.025000	0.502488	-52(GCTTATATAGAC,+,0.00)
mm_35569.1	chr4	41640259	41640459	-	1	NA	NA	NA	-57	NM_027147	69638	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.100000	0.691542	
mm_95422.1	chr11	50131916	50132116	+	1	NA	NA	NA	656	NM_029745	76795	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.025000	0.502488	
mm_161443.1	chr15	73596321	73596521	-	1	NA	NA	NA	105	NM_001168255	106068	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.015000	0.577114	
mm_73143.1	chr8	94984255	94984455	+	1	NA	NA	NA	-44	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.025000	0.631841	
mm_17476.1	chr2	28560569	28560769	-	1	NA	NA	NA	2734	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.005000	0.557214	
mm_163977.1	chr14	55765608	55765808	-	1	NA	NA	NA	-254	NM_008519	16995	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	0.005000	0.442786	
mm_49928.1	chr6	39381299	39381499	+	1	NA	NA	NA	-29	NM_011226	19331	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	0.035000	0.547264	
mm_48270.1	chr5	137962861	137963061	-	1	NA	NA	NA	-2	NM_080450	118446	Mm.332771	NM_080450	ENSMUSG00000056966	Gjc3	Cx29|Gje1	gap junction protein, gamma 3	protein-coding	0.015000	0.517413	-80(TCTTTTATGCTG,+,0.00)
mm_22971.1	chr3	32708651	32708851	+	1	NA	NA	NA	205	NM_019673	56456	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0.090000	0.621891	
mm_59609.1	chr7	28142318	28142518	+	1	NA	NA	NA	12952	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.020000	0.517413	
mm_20412.1	chr2	129300154	129300354	-	1	NA	NA	NA	2884	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.005000	0.417910	
mm_117682.1	chr13	94245479	94245679	-	1	NA	NA	NA	39702	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.000000	0.482587	
mm_12865.1	chr2	83812505	83812705	+	1	NA	NA	NA	-123	NM_175514	241520	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	0.135000	0.771144	
mm_77885.1	chr9	7282226	7282426	+	1	NA	NA	NA	9812	NM_008607	17386	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0.015000	0.388060	
mm_58812.1	chr7	16400013	16400213	+	1	NA	NA	NA	-1083	NM_198631	330474	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.090000	0.611940	
mm_34836.1	chr4	155250189	155250389	+	1	NA	NA	NA	323	NR_033802	67513	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	0.070000	0.611940	
mm_100557.1	chr11	120729443	120729643	+	1	NA	NA	NA	-2259	NM_001347608	67880	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	0.045000	0.557214	
mm_130524.1	chr15	98881299	98881499	-	1	NA	NA	NA	15	NM_026967	69159	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding	0.085000	0.676617	
mm_138532.1	chr17	35243064	35243264	+	1	NA	NA	NA	347	NM_001252457	53817	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	0.025000	0.522388	
mm_17730.1	chr2	32453087	32453287	-	1	NA	NA	NA	-1717	NM_146118	227731	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.005000	0.472637	71(GACCCTAAAAGA,-,0.00)
mm_79002.1	chr9	45409981	45410181	+	1	NA	NA	NA	4004	NM_007503	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.020000	0.606965	
mm_64989.1	chr7	16916801	16917001	-	1	NA	NA	NA	7131	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.035000	0.507463	
mm_77013.1	chr8	107588136	107588336	-	1	NA	NA	NA	246	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.105000	0.691542	
mm_117708.1	chr13	95165545	95165745	-	1	NA	NA	NA	57405	NM_001170669	218461	Mm.100167	NM_172263	ENSMUSG00000021684	Pde8b	B230331L10Rik|C030047E14Rik	phosphodiesterase 8B	protein-coding	0.010000	0.333333	-65(CCCTTAATGCGC,+,0.00)
mm_118626.1	chr14	21194382	21194582	+	1	NA	NA	NA	118330	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.010000	0.502488	
mm_20774.1	chr2	143860375	143860575	-	1	NA	NA	NA	2698	NM_009751	12075	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0.010000	0.427861	
mm_151075.1	chr19	47579542	47579742	+	1	NA	NA	NA	-377	NM_009289	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0.215000	0.810945	
mm_2863.1	chr1	131712620	131712820	+	1	NA	NA	NA	24025	NM_001311096	226421	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0.005000	0.402985	-79(GCTTTTAGGCTG,+,0.00),-53(CACTTGAAAAGC,-,0.00)
mm_149184.1	chr19	9899611	9899811	+	1	NA	NA	NA	-178	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.080000	0.562189	
mm_35039.1	chr4	4138356	4138556	-	1	NA	NA	NA	-11	NM_001002927	18619	Mm.475097	NM_001002927	ENSMUSG00000045573	Penk	AI326464|ENK|PPA|Penk1	preproenkephalin	protein-coding	0.060000	0.582090	
mm_151873.1	chr19	5798217	5798417	-	1	NA	NA	NA	-2336	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.010000	0.363184	
mm_133947.1	chr16	3959394	3959594	-	1	NA	NA	NA	17138	NM_175547	268857	Mm.215994	NM_175547	ENSMUSG00000049871	Nlrc3	CLR16.2|D230007K08Rik|mFLJ00348	NLR family, CARD domain containing 3	protein-coding	0.000000	0.467662	
mm_102569.1	chr11	61515395	61515595	-	1	NA	NA	NA	10351	NM_001330781	27078	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	0.010000	0.353234	
mm_135569.1	chr16	50262368	50262568	-	1	NA	NA	NA	169921	NM_027444	70508	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.030000	0.517413	
mm_90134.1	chr10	117721623	117721823	+	1	NA	NA	NA	-10965	NM_001288586	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.015000	0.467662	
mm_6613.1	chr1	75479297	75479497	-	1	NA	NA	NA	74	NM_001001565	74241	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0.095000	0.726368	
mm_70833.1	chr8	23153200	23153400	+	1	NA	NA	NA	29	NM_029002	74561	Mm.290028	NM_029002	ENSMUSG00000063672	Nkx6-3	9130417I07Rik|Nkx6.3	NK6 homeobox 3	protein-coding	0.015000	0.547264	
mm_92397.1	chr10	76614398	76614598	-	1	NA	NA	NA	8906	NM_146007	12834	Mm.1949	NM_146007	ENSMUSG00000020241	Col6a2	Col6a-2	collagen, type VI, alpha 2	protein-coding	0.070000	0.601990	
mm_6442.1	chr1	73998430	73998630	-	1	NA	NA	NA	125917	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.010000	0.532338	
mm_107761.1	chr12	59072178	59072378	+	1	NA	NA	NA	5359	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.010000	0.457711	
mm_133022.1	chr16	57121592	57121792	+	1	NA	NA	NA	-22	NM_138599	28185	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70 homolog A (yeast)	protein-coding	0.085000	0.666667	
mm_79090.1	chr9	46242590	46242790	+	1	NA	NA	NA	1846	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.050000	0.582090	
mm_105703.1	chr11	108262747	108262947	-	1	NA	NA	NA	81041	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.010000	0.373134	
mm_54607.1	chr6	38341762	38341962	-	1	NA	NA	NA	12741	NM_028864	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.035000	0.577114	
mm_31506.1	chr4	53566489	53566689	+	1	NA	NA	NA	-64882	NM_176966	319636	Mm.103464	NM_176966	ENSMUSG00000054752	Fsd1l	A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl|OTTMUSG00000007002	fibronectin type III and SPRY domain containing 1-like	protein-coding	0.010000	0.343284	
mm_138222.1	chr17	34325569	34325769	+	1	NA	NA	NA	-6	NM_001033978	381091	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	0.005000	0.592040	
mm_45153.1	chr5	49334846	49335046	-	1	NA	NA	NA	-49287	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.000000	0.273632	
mm_121585.1	chr14	6287235	6287435	-	1	NA	NA	NA	-85	NM_001270812	100861615	Mm.488431	NM_001270812	ENSMUSG00000079396	LOC100861615	-	alpha takusan-like	protein-coding	0.110000	0.736318	
mm_82970.1	chr9	35789983	35790183	-	1	NA	NA	NA	29	NM_026593	68171	Mm.99495	NM_026593	ENSMUSG00000032108	D730048I06Rik	Pate-C|Pate6|mANLP2	RIKEN cDNA D730048I06 gene	protein-coding	0.010000	0.447761	
mm_30969.1	chr4	34485650	34485850	+	1	NA	NA	NA	-64865	NM_001007589	433693	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.055000	0.502488	
mm_22389.1	chr2	181196949	181197149	-	1	NA	NA	NA	5740	NM_009184	20459	Mm.4497	NM_009184	ENSMUSG00000038751	Ptk6	BRK|Sik|Tksk|tks	PTK6 protein tyrosine kinase 6	protein-coding	0.010000	0.507463	
mm_96586.1	chr11	69089654	69089854	+	1	NA	NA	NA	1226	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.020000	0.601990	
mm_87539.1	chr10	53596702	53596902	+	1	NA	NA	NA	-159	NM_025541	66403	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0.130000	0.741294	
mm_14278.1	chr2	128792283	128792483	+	1	NA	NA	NA	-25920	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.010000	0.487562	
mm_135748.1	chr16	55923889	55924089	-	1	NA	NA	NA	10859	NM_001159364	74201	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	0.005000	0.447761	42(CTTTTTCAAGGC,+,0.00)
mm_127721.1	chr15	103135721	103135921	+	1	NA	NA	NA	11007	NR_045743	432989	Mm.383979	NR_045743	ENSMUSG00000097003	D930007P13Rik	-	Riken cDNA D930007P13 gene	ncRNA	0.045000	0.532338	
mm_154546.1	chrM	14704	14904	-	1	NA	NA	NA	NA	NA									0.020000	0.393035	
mm_57329.1	chr6	124740939	124741139	-	1	NA	NA	NA	40	NM_013535	14790	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.080000	0.631841	
mm_149523.1	chr19	12442737	12442937	+	1	NA	NA	NA	14932	NM_019540	56093	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.015000	0.517413	
mm_11599.1	chr2	33641195	33641395	+	1	NA	NA	NA	102	NR_046275	100504399	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	0.065000	0.616915	
mm_137563.1	chr17	27702628	27702828	+	1	NA	NA	NA	17489	NM_178365	23969	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.100000	0.676617	
mm_127711.1	chr15	103010034	103010234	+	1	NA	NA	NA	572	NM_010465	15425	Mm.4444	NM_010465	ENSMUSG00000001661	Hoxc6	Hox-3.3|Hox-6.1	homeobox C6	protein-coding	0.070000	0.592040	-44(TTTTTTATGGCC,+,0.00),-34(CCCCATAAAAAC,-,0.00)
mm_130811.1	chr15	101734317	101734517	-	1	NA	NA	NA	8680	NM_019956	56735	Mm.358677	NM_019956	ENSMUSG00000051879	Krt71	AA589543|Ca|Cal4|Cu|Krt2-6g|mK6irs|mK6irs1	keratin 71	protein-coding	0.010000	0.557214	
mm_128428.1	chr15	49981352	49981552	-	1	NA	NA	NA	907597	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.010000	0.263682	81(GTTTATAAAAAC,-,0.00)
mm_92406.1	chr10	76709608	76709808	-	1	NA	NA	NA	16336	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.040000	0.606965	
mm_95489.1	chr11	51606243	51606443	+	1	NA	NA	NA	538	NM_001048061	15384	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.145000	0.751244	
mm_162191.1	chrX	112093356	112093556	+	1	NA	NA	NA	-64	NM_031382	83556	Mm.190608	NM_031382	ENSMUSG00000034555	Tex16	OTTMUSG00000018437	testis expressed gene 16	protein-coding	0.000000	0.407960	
mm_331.1	chr1	26616889	26617089	+	1	NA	NA	NA	70471	NM_001033764	210940	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	0.020000	0.447761	
mm_98605.1	chr11	95837694	95837894	+	1	NA	NA	NA	-4501	NM_023121	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.020000	0.452736	
mm_68534.1	chr7	113368725	113368925	-	1	NA	NA	NA	514	NM_133700	68815	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0.040000	0.527363	
mm_45250.1	chr5	59985921	59986121	-	1	NA	NA	NA	-19	NR_040682	71057	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.000000	0.482587	
mm_156263.1	chrX	136831050	136831250	+	1	NA	NA	NA	8404	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.000000	0.472637	
mm_43696.1	chr5	139166980	139167180	+	1	NA	NA	NA	16857	NM_001081265	433956	Mm.5547	NM_001081265	ENSMUSG00000025857	Dnaaf5	BC053401|C76907|Heatr2	dynein, axonemal assembly factor 5	protein-coding	0.010000	0.542289	
mm_165799.1	chr3	141465559	141465759	+	1	NA	NA	NA	95	NM_001293561	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.070000	0.646766	
mm_161235.1	chr13	93637680	93637880	-	1	NA	NA	NA	-22	NM_016668	12116	Mm.329582	NM_016668	ENSMUSG00000074768	Bhmt	-	betaine-homocysteine methyltransferase	protein-coding	0.025000	0.522388	
mm_106257.1	chr11	117873347	117873547	-	1	NA	NA	NA	79	NM_027919	71776	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.075000	0.641791	
mm_153445.1	chr19	41000387	41000587	-	1	NA	NA	NA	-5952	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.000000	0.353234	-60(TCTTTAATGGGG,+,0.00)
mm_18027.1	chr2	38623478	38623678	-	1	NA	NA	NA	20328	NM_011187	19177	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0.015000	0.482587	
mm_154693.1	chrX	8050665	8050865	+	1	NA	NA	NA	23548	NM_001290716	20937	Mm.9244	NM_011514	ENSMUSG00000039231	Suv39h1	AI852103|AL022883|DXHXS7466e|H3-K9-HMTase 1|KMT1A|mIS6	suppressor of variegation 3-9 homolog 1 (Drosophila)	protein-coding	0.010000	0.452736	
mm_64286.1	chr7	141845275	141845475	+	1	NA	NA	NA	6303	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.020000	0.582090	
mm_99849.1	chr11	109362713	109362913	+	1	NA	NA	NA	19	NM_010303	14674	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0.130000	0.825871	
mm_99023.1	chr11	98937062	98937262	+	1	NA	NA	NA	-534	NM_009024	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.020000	0.492537	
mm_171380.1	chr4	119293663	119293863	-	1	NA	NA	NA	750	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.060000	0.567164	
mm_108201.1	chr12	76902050	76902250	+	1	NA	NA	NA	60098	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.005000	0.477612	12(GAGTTTATAGGG,-,0.00),14(GTTTATAGGGGC,+,0.00)
mm_70234.1	chr8	3248542	3248742	+	1	NA	NA	NA	30975	NM_010568	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.020000	0.492537	
mm_63186.1	chr7	125552210	125552410	+	1	NA	NA	NA	28	NM_001008700	16190	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0.105000	0.671642	
mm_153712.1	chr19	44400074	44400274	-	1	NA	NA	NA	7535	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.055000	0.542289	
mm_124904.1	chr15	10952109	10952309	+	1	NA	NA	NA	-123	NM_030888	81799	Mm.280158	NM_030888	ENSMUSG00000058914	C1qtnf3	2310005P21Rik|CORS-26|CORS26|CTRP3|Corcs|Cors	C1q and tumor necrosis factor related protein 3	protein-coding	0.025000	0.512438	
mm_73037.1	chr8	94222848	94223048	+	1	NA	NA	NA	8347	NM_172410	71805	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0.040000	0.522388	
mm_66688.1	chr7	45867387	45867587	-	1	NA	NA	NA	-806	NM_008172	14814	Mm.322594	NM_008172	ENSMUSG00000002771	Grin2d	GluN2D|NMDAR2D|NR2D	glutamate receptor, ionotropic, NMDA2D (epsilon 4)	protein-coding	0.025000	0.562189	
mm_90404.1	chr10	127380547	127380747	+	1	NA	NA	NA	-9664	NM_001168292	71750	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.105000	0.711443	
mm_26160.1	chr3	138277392	138277592	+	1	NA	NA	NA	-153	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.030000	0.462687	
mm_119497.1	chr14	47380036	47380236	+	1	NA	NA	NA	6276	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.010000	0.606965	
mm_161587.1	chr16	32668230	32668430	+	1	NA	NA	NA	-133	NR_033493	675921	Mm.404316	NR_033493	ENSMUSG00000075265	Tnk2os	ENSMUSG00000075265|Gm10818	tyrosine kinase, non-receptor 2, opposite strand	ncRNA	0.035000	0.666667	
mm_85228.1	chr9	97111069	97111269	-	1	NA	NA	NA	-128	NM_138756	192287	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.090000	0.631841	
mm_54558.1	chr6	37299866	37300066	-	1	NA	NA	NA	10	NM_001081206	320127	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.100000	0.736318	
mm_159571.1	chr4	115298845	115299045	+	1	NA	NA	NA	-101	NM_177406	277753	Mm.276106	NM_177406	ENSMUSG00000066071	Cyp4a12a	BC025936|Cyp4a12	cytochrome P450, family 4, subfamily a, polypeptide 12a	protein-coding	0.000000	0.402985	
mm_97155.1	chr11	75463898	75464098	+	1	NA	NA	NA	282	NR_029739	387141		NR_029739	ENSMUSG00000065529	Mir22	Mirn22|mmu-mir-22	microRNA 22	ncRNA	0.000000	0.487562	
mm_157490.1	chrX	48314603	48314803	-	1	NA	NA	NA	-26655	NM_178782	320376	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	0.065000	0.661692	
mm_100753.1	chr11	4237437	4237637	-	1	NA	NA	NA	752	NM_001013365	18413	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.035000	0.661692	
mm_17067.1	chr2	22744484	22744684	-	1	NA	NA	NA	-29743	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.055000	0.726368	
mm_123554.1	chr14	66846353	66846553	-	1	NA	NA	NA	22147	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.010000	0.472637	
mm_118860.1	chr14	25842084	25842284	+	1	NA	NA	NA	29	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.115000	0.686567	
mm_155976.1	chrX	106126715	106126915	+	1	NA	NA	NA	-16460	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.020000	0.442786	
mm_138414.1	chr17	35068813	35069013	+	1	NA	NA	NA	1588	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.035000	0.582090	
mm_154697.1	chrX	8252676	8252876	+	1	NA	NA	NA	-370	NM_001290430	54632	Mm.327529	NM_133991	ENSMUSG00000031171	Ftsj1	AI931847|Ftsj|Ftsjl|Sfc12	FtsJ RNA methyltransferase homolog 1 (E. coli)	protein-coding	0.065000	0.472637	
mm_93142.1	chr10	92165068	92165268	-	1	NA	NA	NA	10	NR_028262	110333	Mm.429764	NR_028262		Rmst	100041799|AI853140|C230053E11Rik|D930049J19Rik|Dmt2|Gm3515|M2|Ncrms	rhabdomyosarcoma 2 associated transcript (non-coding RNA)	ncRNA	0.020000	0.517413	
mm_25938.1	chr3	131471114	131471314	+	1	NA	NA	NA	-93554	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.025000	0.417910	
mm_21001.1	chr2	152343847	152344047	-	1	NA	NA	NA	113	NM_175093	228775	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	0.095000	0.671642	
mm_68528.1	chr7	112688415	112688615	-	1	NA	NA	NA	9195	NM_009346	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.015000	0.532338	
mm_67199.1	chr7	74284250	74284450	-	1	NA	NA	NA	270430	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.015000	0.482587	
mm_20559.1	chr2	131074337	131074537	-	1	NA	NA	NA	-10623	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.030000	0.606965	
mm_114846.1	chr13	92774925	92775125	+	1	NA	NA	NA	19793	NM_011582	21828	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	0.025000	0.512438	
mm_100003.1	chr11	114851531	114851731	+	1	NA	NA	NA	91	NM_001110338	70355	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.065000	0.606965	
mm_48495.1	chr5	142774092	142774292	-	1	NA	NA	NA	43195	NM_178242	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.040000	0.552239	
mm_100918.1	chr11	6292040	6292240	-	1	NA	NA	NA	-418	NM_001252288	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.110000	0.686567	
mm_46619.1	chr5	108132483	108132683	-	1	NA	NA	NA	8	NM_001347383	73130	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik	transmembrane p24 trafficking protein 5	protein-coding	0.070000	0.611940	
mm_7057.1	chr1	87180865	87181065	-	1	NA	NA	NA	-2349	NM_027084	69453	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	0.010000	0.482587	
mm_96792.1	chr11	69976560	69976760	+	1	NA	NA	NA	3670	NM_001253700	54351	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.010000	0.467662	
mm_92880.1	chr10	82662544	82662744	-	1	NA	NA	NA	28006	NM_029102	74782	Mm.191281	NM_029102	ENSMUSG00000020251	Glt8d2	1110021D20Rik	glycosyltransferase 8 domain containing 2	protein-coding	0.015000	0.562189	
mm_74795.1	chr8	22398371	22398571	-	1	NA	NA	NA	150	NM_181325	18408	Mm.200907	NM_181325	ENSMUSG00000031482	Slc25a15	D630044L02Rik|Ornt1	solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15	protein-coding	0.135000	0.776119	
mm_56781.1	chr6	116633721	116633921	-	1	NA	NA	NA	-4822	NM_026057	67255	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0.015000	0.472637	22(CCTTTAATACAC,+,0.00)
mm_96898.1	chr11	70440226	70440426	+	1	NA	NA	NA	2071	NR_106064	102465670		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.040000	0.592040	
mm_5505.1	chr1	37429913	37430113	-	1	NA	NA	NA	90	NM_198006	76178	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	0.100000	0.681592	
mm_156364.1	chrX	139563229	139563429	+	1	NA	NA	NA	-11	NM_001254761	66889	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	0.005000	0.452736	
mm_98066.1	chr11	85832877	85833077	+	1	NA	NA	NA	362	NM_009324	21385	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0.170000	0.865672	
mm_112573.1	chr13	13590329	13590529	+	1	NA	NA	NA	20	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.085000	0.691542	86(TCCTTTAGAGGG,+,0.00)
mm_22570.1	chr3	10186590	10186790	+	1	NA	NA	NA	-2805	NM_001030305	18857	Mm.371777	NM_001030305	ENSMUSG00000052468	Pmp2	P2	peripheral myelin protein 2	protein-coding	0.005000	0.353234	-95(CAGTTTAAAAGA,-,0.00)
mm_115504.1	chr13	4150566	4150766	-	1	NA	NA	NA	-20	NM_001346535	105349	Mm.41337	NM_134066	ENSMUSG00000021214	Akr1c18	AW146047	aldo-keto reductase family 1, member C18	protein-coding	0.015000	0.447761	
mm_76181.1	chr8	82401732	82401932	-	1	NA	NA	NA	754	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.010000	0.462687	
mm_147201.1	chr18	37887855	37888055	-	1	NA	NA	NA	-33295	NR_105945	102465592		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.005000	0.393035	
mm_26524.1	chr3	145962575	145962775	+	1	NA	NA	NA	24643	NM_025555	66421	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	0.015000	0.517413	-34(TCATATAAAAGG,-,0.00)
mm_5267.1	chr1	17097756	17097956	-	1	NA	NA	NA	33	NM_020604	57339	Mm.143761	NM_020604	ENSMUSG00000042686	Jph1	ENSMUSG00000054314|JP-1|Jp1	junctophilin 1	protein-coding	0.135000	0.776119	
mm_30273.1	chr3	146812836	146813036	-	1	NA	NA	NA	10	NM_011100	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.170000	0.786070	
mm_163890.1	chr14	26965788	26965988	-	1	NA	NA	NA	4663	NM_145221	72993	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	0.000000	0.373134	
mm_108030.1	chr12	73731683	73731883	+	1	NA	NA	NA	146987	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.015000	0.343284	
mm_148305.1	chr18	83238502	83238702	-	1	NA	NA	NA	87282	NR_045361	70960	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0.005000	0.437811	
mm_38253.1	chr4	136695522	136695722	-	1	NA	NA	NA	73001	NM_001243262	242707	Mm.448979	NM_001243262	ENSMUSG00000070683	Lactbl1	-	lactamase, beta-like 1	protein-coding	0.015000	0.442786	
mm_65259.1	chr7	19887979	19888179	-	1	NA	NA	NA	-114	NM_177036	319930	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.020000	0.597015	
mm_66121.1	chr7	31052982	31053182	-	1	NA	NA	NA	-1628	NM_022007	57780	Mm.41770	NM_022007	ENSMUSG00000036578	Fxyd7	1110035I01Rik	FXYD domain-containing ion transport regulator 7	protein-coding	0.040000	0.626866	
mm_147299.1	chr18	39519158	39519358	-	1	NA	NA	NA	-32013	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.020000	0.532338	
mm_48257.1	chr5	137831178	137831378	-	1	NA	NA	NA	5000	NM_153510	231805	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.010000	0.532338	
mm_165421.1	chr2	148851110	148851310	-	1	NA	NA	NA	-276	NM_029960	77705	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	0.010000	0.472637	
mm_106493.1	chr11	120347345	120347545	-	1	NA	NA	NA	-32	NR_105900	102465564		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.010000	0.487562	
mm_13775.1	chr2	118745656	118745856	+	1	NA	NA	NA	-2	NM_001301269	100043272	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik|ENSMUSG00000074918	InaF motif containing 2	protein-coding	0.170000	0.820896	-75(GCCCTTTTAAGG,-,0.00),-74(CCCTTTTAAGGG,-,0.00),-73(CCTTTTAAGGGG,+,0.00),-72(CTTTTAAGGGGC,+,0.00)
mm_132229.1	chr16	32670688	32670888	+	1	NA	NA	NA	-2366	NM_001347185	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.010000	0.487562	
mm_105742.1	chr11	109363097	109363297	-	1	NA	NA	NA	403	NM_010303	14674	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0.110000	0.676617	
mm_17355.1	chr2	26608573	26608773	-	1	NA	NA	NA	-4256	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.010000	0.472637	
mm_26084.1	chr3	136684794	136684994	+	1	NA	NA	NA	14828	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.010000	0.462687	-36(CCTTTTAAATGC,+,0.00)
mm_116089.1	chr13	28663281	28663481	-	1	NA	NA	NA	47492	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.000000	0.338308	
mm_30207.1	chr3	144760702	144760902	-	1	NA	NA	NA	175	NR_130895	12722	Mm.454553	NM_009899	ENSMUSG00000056025	Clca3a1	Cacc|Clca1	chloride channel accessory 3A1	protein-coding	0.015000	0.512438	
mm_154507.1	chrM	11980	12180	-	1	NA	NA	NA	NA	NA									0.005000	0.353234	
mm_87735.1	chr10	60134694	60134894	+	1	NA	NA	NA	8018	NR_105871	102465546		NR_105871	ENSMUSG00000105468	Mir6906	mmu-mir-6906	microRNA 6906	ncRNA	0.040000	0.522388	
mm_163086.1	chr11	69600600	69600800	-	1	NA	NA	NA	5260	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.000000	0.492537	
mm_22159.1	chr2	172939931	172940131	-	1	NA	NA	NA	290	NM_007557	12162	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	0.140000	0.731343	
mm_49836.1	chr6	37900382	37900582	+	1	NA	NA	NA	-5	NM_001272076	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.000000	0.507463	
mm_3307.1	chr1	137898559	137898759	+	1	NA	NA	NA	-67796	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.045000	0.537313	
mm_48112.1	chr5	137116098	137116298	-	1	NA	NA	NA	9	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.055000	0.611940	
mm_157578.1	chrX	52743805	52744005	-	1	NA	NA	NA	688	NR_003188	751866	Mm.381916	NR_003188		Kis2	Kis2-T1|Kis2-T2|Kis2-T3|Kis2-T4|Kis2-T5|Platr24|Xpcl1	Kaplan integration site 2	ncRNA	0.045000	0.512438	
mm_79825.1	chr9	64544829	64545029	+	1	NA	NA	NA	159303	NM_001134399	214058	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	0.005000	0.427861	
mm_66467.1	chr7	44929433	44929633	-	1	NA	NA	NA	-43	NM_001077264	11771	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	0.080000	0.636816	
mm_16145.1	chr2	172006848	172007048	+	1	NA	NA	NA	36518	NM_175631	228942	Mm.40555	NM_175631	ENSMUSG00000067578	Cbln4	AI848962	cerebellin 4 precursor protein	protein-coding	0.010000	0.502488	-47(AGCCTTATAGGG,-,0.00),-45(CCTTATAGGGCA,+,0.00)
mm_153091.1	chr19	32485732	32485932	-	1	NA	NA	NA	63	NM_010799	17330	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0.135000	0.716418	
mm_1858.1	chr1	84839754	84839954	+	1	NA	NA	NA	13	NM_025386	66153	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.070000	0.547264	-67(GTTTTTAAAGTG,+,0.00)
mm_36831.1	chr4	106316118	106316318	-	1	NA	NA	NA	5	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.165000	0.815920	
mm_149137.1	chr19	9002981	9003181	+	1	NA	NA	NA	13797	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.000000	0.472637	
mm_162752.1	chr10	60062398	60062598	+	1	NA	NA	NA	-43759	NM_052994	94214	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.030000	0.497512	
mm_132786.1	chr16	44943645	44943845	+	1	NA	NA	NA	67	NM_001128132	74603	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0.010000	0.442786	
mm_37522.1	chr4	124693487	124693687	-	1	NA	NA	NA	-33	NM_026031	67205	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11l	2700082D03Rik|CGI-94|Cgi94|Utp11	UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	protein-coding	0.065000	0.592040	
mm_114928.1	chr13	95696856	95697056	+	1	NA	NA	NA	36	NM_010170	14064	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	0.015000	0.517413	
mm_64891.1	chr7	15945696	15945896	-	1	NA	NA	NA	312	NM_133831	68077	Mm.277634	NM_133831	ENSMUSG00000041560	Gltscr2	5330430H08Rik|9430097C02Rik|AU041936|AW536441|PICT-1|R74911	glioma tumor suppressor candidate region gene 2	protein-coding	0.100000	0.606965	
mm_121122.1	chr14	101840493	101840693	+	1	NA	NA	NA	-30	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.040000	0.487562	66(CTTTTTATGCTC,+,0.00)
mm_135465.1	chr16	45801685	45801885	-	1	NA	NA	NA	42593	NM_153412	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology like domain, family B, member 2	protein-coding	0.015000	0.472637	-35(AGCTTTTTAAGC,-,0.00),-33(CTTTTTAAGCCA,+,0.00)
mm_80131.1	chr9	70656155	70656355	+	1	NA	NA	NA	919	NM_172772	235461	Mm.170855	NM_172772	ENSMUSG00000042444	Fam63b	AI465301|B230380D07Rik|mKIAA1164	family with sequence similarity 63, member B	protein-coding	0.010000	0.517413	
mm_51152.1	chr6	70703443	70703643	+	1	NA	NA	NA	88632	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.497512	-24(GCTTCTTTAAGG,-,0.00)
mm_139131.1	chr17	47505098	47505298	+	1	NA	NA	NA	147	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.055000	0.592040	
mm_110529.1	chr12	54986254	54986454	-	1	NA	NA	NA	-18	NM_013815	217578	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.080000	0.597015	
mm_103552.1	chr11	77718698	77718898	-	1	NA	NA	NA	6495	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.020000	0.462687	
mm_38542.1	chr4	141598119	141598319	-	1	NA	NA	NA	1705	NM_001163256	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.005000	0.547264	
mm_85155.1	chr9	96333088	96333288	-	1	NA	NA	NA	31111	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.010000	0.427861	
mm_69176.1	chr7	127218332	127218532	-	1	NA	NA	NA	13	NM_017461	54204	Mm.18	NM_017461	ENSMUSG00000000486	Sept1	Diff6|Pnutl3	septin 1	protein-coding	0.020000	0.597015	
mm_155767.1	chrX	96239842	96240042	+	1	NA	NA	NA	16	NR_030718	100038363	Mm.30815	NR_030718	ENSMUSG00000078122	F630028O10Rik	ENSMUSG00000065522|Gm14924|OTTMUSG00000018496|mir-223	RIKEN cDNA F630028O10 gene	ncRNA	0.005000	0.437811	
mm_68822.1	chr7	126111923	126112123	-	1	NA	NA	NA	-29612	NM_001101488	269994	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.005000	0.353234	
mm_149945.1	chr19	27322466	27322666	+	1	NA	NA	NA	-53	NM_183179	240595	Mm.269759	NM_183179	ENSMUSG00000047298	Kcnv2	KV11.1	potassium channel, subfamily V, member 2	protein-coding	0.010000	0.532338	
mm_2978.1	chr1	133129330	133129530	+	1	NA	NA	NA	-1736	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.020000	0.472637	33(GCCTTGAAAAGG,-,0.00)
mm_113033.1	chr13	23531748	23531948	+	1	NA	NA	NA	804	NM_153173	69386	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.040000	0.462687	
mm_26117.1	chr3	137838397	137838597	+	1	NA	NA	NA	-25990	NM_001316995	51788	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0.005000	0.363184	-34(TCCTATAAAAAG,-,0.00)
mm_116162.1	chr13	30684558	30684758	-	1	NA	NA	NA	24599	NM_134068	105352	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.000000	0.402985	
mm_132458.1	chr16	36156707	36156907	+	1	NA	NA	NA	-4	NM_173869	268885	Mm.187847	NM_173869	ENSMUSG00000059657	Stfa2l1	-	stefin A2 like 1	protein-coding	0.000000	0.447761	-31(CCTTTAAAACCC,+,0.00)
mm_134839.1	chr16	26371687	26371887	-	1	NA	NA	NA	52	NM_016674	12737	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding	0.060000	0.616915	
mm_49514.1	chr6	29870198	29870398	+	1	NA	NA	NA	10702	NM_001171001	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.005000	0.477612	
mm_57725.1	chr6	128891042	128891242	-	1	NA	NA	NA	-18	NM_001254946	232406	Mm.30745	NM_001254946	ENSMUSG00000090164	BC035044	-	cDNA sequence BC035044	protein-coding	0.005000	0.427861	
mm_49382.1	chr6	24733145	24733345	+	1	NA	NA	NA	0	NM_028920	74409	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0.015000	0.432836	
mm_34822.1	chr4	154961369	154961569	+	1	NA	NA	NA	546	NM_010419	15208	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hairy and enhancer of split 5 (Drosophila)	protein-coding	0.080000	0.691542	
mm_21749.1	chr2	164821002	164821202	-	1	NA	NA	NA	-1584	NM_028028	71971	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	0.010000	0.542289	
mm_164965.1	chr19	6393780	6393980	+	1	NA	NA	NA	-6703	NM_011242	19395	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.035000	0.582090	
mm_155859.1	chrX	101321144	101321344	+	1	NA	NA	NA	22065	NM_172932	245537	Mm.121508	NM_172932	ENSMUSG00000031302	Nlgn3	A230085M13Rik|HNL3|NL3	neuroligin 3	protein-coding	0.010000	0.278607	
mm_121364.1	chr14	117350236	117350436	+	1	NA	NA	NA	425039	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.000000	0.472637	-91(GCTTTAAAGGTC,+,0.00)
mm_10799.1	chr2	24349523	24349723	+	1	NA	NA	NA	4252	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.020000	0.512438	-34(CCCCTTATAGTC,+,0.00)
mm_118547.1	chr14	17659187	17659387	+	1	NA	NA	NA	-1673	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.040000	0.512438	
mm_89136.1	chr10	85538505	85538705	+	1	NA	NA	NA	-59806	NM_001017525	74007	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.020000	0.527363	
mm_29558.1	chr3	116807890	116808090	-	1	NA	NA	NA	176	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.115000	0.631841	
mm_152548.1	chr19	11372837	11373037	-	1	NA	NA	NA	-2551	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.005000	0.447761	
mm_165195.1	chr2	32386946	32387146	+	1	NA	NA	NA	693	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.015000	0.497512	
mm_151626.1	chr19	3911680	3911880	-	1	NA	NA	NA	994	NM_144870	225887	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0.020000	0.552239	
mm_26166.1	chr3	138280364	138280564	+	1	NA	NA	NA	2819	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.025000	0.527363	
mm_121167.1	chr14	103014344	103014544	+	1	NA	NA	NA	19359	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.000000	0.447761	
mm_117743.1	chr13	95889275	95889475	-	1	NA	NA	NA	2547	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.015000	0.417910	
mm_38625.1	chr4	142084108	142084308	-	1	NA	NA	NA	-90	NR_027137	100038693	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	ENSMUSG00000073728|Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.110000	0.756219	
mm_94618.1	chr11	16759419	16759619	+	1	NA	NA	NA	7316	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.015000	0.432836	
mm_31414.1	chr4	48048986	48049186	+	1	NA	NA	NA	-2160	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.055000	0.631841	
mm_65285.1	chr7	24435385	24435585	-	1	NA	NA	NA	10197	NM_199013	210145	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.015000	0.616915	
mm_105147.1	chr11	101462141	101462341	-	1	NA	NA	NA	3958	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.025000	0.537313	-76(GGGTATTAATGG,-,0.00)
mm_147989.1	chr18	67631561	67631761	-	1	NA	NA	NA	9675	NM_001081073	225659	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0.015000	0.417910	
mm_106189.1	chr11	116807619	116807819	-	1	NA	NA	NA	20327	NM_026280	67622	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0.000000	0.532338	
mm_125751.1	chr15	73748317	73748517	+	1	NA	NA	NA	391	NM_008975	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.185000	0.825871	-76(CGCTATAAATAG,-,0.00)
mm_38325.1	chr4	137356214	137356414	-	1	NA	NA	NA	1445	NM_009861	12540	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.005000	0.402985	-41(TTCCATTAAAAG,-,0.00),-39(CCATTAAAAGGG,+,0.00)
mm_5631.1	chr1	40425230	40425430	-	1	NA	NA	NA	-4240	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.000000	0.388060	-33(TTGTATAAAAAG,-,0.00)
mm_10716.1	chr2	22804533	22804733	+	1	NA	NA	NA	30306	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.005000	0.462687	
mm_114668.1	chr13	78211375	78211575	+	1	NA	NA	NA	-12602	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.025000	0.462687	
mm_142426.1	chr17	45569264	45569464	-	1	NA	NA	NA	3897	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.030000	0.437811	-34(TTCTTTTAAAGC,-,0.00),-33(TCTTTTAAAGCT,+,0.00)
mm_94106.1	chr10	128583679	128583879	-	1	NA	NA	NA	718	NR_105882	102465553		NR_105882	ENSMUSG00000098592	Mir6917	Gm27633|mmu-mir-6917	microRNA 6917	ncRNA	0.015000	0.567164	
mm_173067.1	chrX	134541521	134541721	-	1	NA	NA	NA	49	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.110000	0.691542	
mm_96123.1	chr11	60776781	60776981	+	1	NA	NA	NA	484	NM_009410	21975	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0.100000	0.626866	
mm_37005.1	chr4	111880506	111880706	-	1	NA	NA	NA	22190	NM_145551	230612	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding	0.010000	0.482587	
mm_173021.1	chrX	102208272	102208472	+	1	NA	NA	NA	-18981	NM_009094	20102	Mm.66	NM_009094	ENSMUSG00000031320	Rps4x	Rps4|Rps4-1	ribosomal protein S4, X-linked	protein-coding	0.025000	0.542289	
mm_46441.1	chr5	105082667	105082867	-	1	NA	NA	NA	27525	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.020000	0.477612	
mm_117588.1	chr13	89694828	89695028	-	1	NA	NA	NA	47584	NM_001081249	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.005000	0.318408	
mm_47912.1	chr5	134951032	134951232	-	1	NA	NA	NA	-4198	NM_009903	12740	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	0.010000	0.527363	
mm_17259.1	chr2	25945986	25946186	-	1	NA	NA	NA	37196	NM_001276360	227634	Mm.36834	NM_001115076	ENSMUSG00000026933	Camsap1	9530003A05Rik|C77823|PRO2405	calmodulin regulated spectrin-associated protein 1	protein-coding	0.005000	0.333333	
mm_122984.1	chr14	54984641	54984841	-	1	NA	NA	NA	-8965	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.030000	0.527363	
mm_170066.1	chr17	31054062	31054262	+	1	NA	NA	NA	-3532	NM_009593	11307	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding	0.000000	0.363184	-37(TGGTATAAAAAG,-,0.00)
mm_37215.1	chr4	117904502	117904702	-	1	NA	NA	NA	10397	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	0.010000	0.557214	
mm_130017.1	chr15	88706317	88706517	-	1	NA	NA	NA	27802	NM_001033274	223770	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	0.010000	0.562189	
mm_122917.1	chr14	54958617	54958817	-	1	NA	NA	NA	7890	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.010000	0.512438	
mm_170971.1	chr2	63911826	63912026	-	1	NA	NA	NA	186112	NM_001267846	60344	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.000000	0.477612	
mm_125006.1	chr15	25364633	25364833	+	1	NA	NA	NA	49031	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.120000	0.726368	
mm_75322.1	chr8	41835212	41835412	-	1	NA	NA	NA	8045	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	0.015000	0.447761	10(GACTCTAAAAGT,-,0.00)
mm_66085.1	chr7	30957259	30957459	-	1	NA	NA	NA	-556	NM_011680	22282	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0.150000	0.686567	
mm_18756.1	chr2	73437432	73437632	-	1	NA	NA	NA	16357	NM_001289722	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.050000	0.656716	
mm_150414.1	chr19	37207458	37207658	+	1	NA	NA	NA	13	NM_001164336	69104	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	0.135000	0.751244	
mm_86881.1	chr10	21997342	21997542	+	1	NA	NA	NA	2776	NM_011361	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.035000	0.532338	
mm_62301.1	chr7	100172356	100172556	+	1	NA	NA	NA	-4214	NM_001190869	57442	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	0.005000	0.457711	
mm_58346.1	chr6	147263766	147263966	-	1	NA	NA	NA	147	NM_008970	19227	Mm.28440	NM_008970	ENSMUSG00000048776	Pthlh	PLP|PTH-like|Pthrp	parathyroid hormone-like peptide	protein-coding	0.065000	0.597015	
mm_21175.1	chr2	154871463	154871663	-	1	NA	NA	NA	21343	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.005000	0.412935	
mm_143619.1	chr17	78835250	78835450	-	1	NA	NA	NA	31	NM_001081179	320473	Mm.46309	NM_028084	ENSMUSG00000039414	Heatr5b	2010013B10Rik|A230048G03Rik|AV071430|D330050P16Rik|mKIAA1414	HEAT repeat containing 5B	protein-coding	0.100000	0.706468	
mm_139510.1	chr17	56372343	56372543	+	1	NA	NA	NA	46393	NM_172132	193796	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b|mKIAA0876	lysine (K)-specific demethylase 4B	protein-coding	0.020000	0.577114	
mm_6088.1	chr1	63176580	63176780	-	1	NA	NA	NA	142	NM_145518	227197	Mm.290791	NM_145518	ENSMUSG00000025968	Ndufs1	5830412M15Rik|9930026A05Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 1	protein-coding	0.070000	0.597015	
mm_147509.1	chr18	50568626	50568826	-	1	NA	NA	NA	-27	NM_026108	67365	Mm.158150	NM_026108	ENSMUSG00000048875	Hdhd1a	1700121L12Rik|GS1|Hdhd1|Pudp	haloacid dehalogenase-like hydrolase domain containing 1A	protein-coding	0.040000	0.502488	
mm_142524.1	chr17	46327896	46328096	-	1	NA	NA	NA	27	NM_001347396	224814	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0.075000	0.676617	
mm_11846.1	chr2	45197667	45197867	+	1	NA	NA	NA	-84488	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.020000	0.373134	
mm_128727.1	chr15	64060583	64060783	-	1	NA	NA	NA	-235	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.090000	0.731343	
mm_85188.1	chr9	96713654	96713854	-	1	NA	NA	NA	17921	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.005000	0.248756	
mm_54531.1	chr6	36715386	36715586	-	1	NA	NA	NA	95875	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.000000	0.283582	
mm_146685.1	chr18	12862284	12862484	-	1	NA	NA	NA	329	NM_001252493	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.120000	0.766169	
mm_13812.1	chr2	119174405	119174605	+	1	NA	NA	NA	-4	NM_001039223	623781	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	OTTMUSG00000015762	predicted gene 14137	protein-coding	0.025000	0.542289	
mm_60692.1	chr7	45172199	45172399	+	1	NA	NA	NA	-1004	NR_106022	102465638		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0.030000	0.592040	
mm_140519.1	chr17	6106193	6106393	-	1	NA	NA	NA	-537	NM_001103181	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.035000	0.482587	
mm_94951.1	chr11	29742277	29742477	+	1	NA	NA	NA	23814	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.000000	0.388060	
mm_96533.1	chr11	68593959	68594159	+	1	NA	NA	NA	7022	NM_177779	276920	Mm.123046	NM_177779	ENSMUSG00000045915	Ccdc42	A530001H01Rik	coiled-coil domain containing 42	protein-coding	0.005000	0.517413	-73(GCCCATATAAAC,-,0.00),-71(CCATATAAACTC,+,0.00)
mm_167795.1	chr9	123924737	123924937	-	1	NA	NA	NA	43855	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.145000	0.781095	
mm_113375.1	chr13	33004471	33004671	+	1	NA	NA	NA	30	NM_009256	20723	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0.020000	0.557214	
mm_90694.1	chr10	130322735	130322935	+	1	NA	NA	NA	-17	NM_183264	67596	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	0.015000	0.482587	
mm_96397.1	chr11	67250454	67250654	+	1	NA	NA	NA	12742	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.020000	0.502488	-50(TTCTTTAAAGCC,+,0.00),-49(TCTTTAAAGCCG,+,0.00)
mm_56353.1	chr6	93717403	93717603	-	1	NA	NA	NA	195460	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.025000	0.507463	
mm_82141.1	chr9	123769106	123769306	+	1	NA	NA	NA	1995	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.005000	0.487562	
mm_58793.1	chr7	16160089	16160289	+	1	NA	NA	NA	-15206	NM_001277988	17537	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0.010000	0.567164	
mm_106863.1	chr12	8009244	8009444	+	1	NA	NA	NA	31667	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.398010	3(GTCTTTATAGTC,+,0.00)
mm_85715.1	chr9	108208995	108209195	-	1	NA	NA	NA	-18712	NM_007567	12217	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	0.025000	0.557214	
mm_52965.1	chr6	123124452	123124652	+	1	NA	NA	NA	1236	NM_001170333	26888	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0.000000	0.383085	
mm_51982.1	chr6	91978870	91979070	+	1	NA	NA	NA	5	NM_172731	232237	Mm.295740	NM_172731	ENSMUSG00000034037	Fgd5	C330025N11Rik|ZFYVE23|mFLJ00274	FYVE, RhoGEF and PH domain containing 5	protein-coding	0.150000	0.786070	
mm_127887.1	chr15	9136021	9136221	-	1	NA	NA	NA	4333	NM_013787	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.005000	0.422886	
mm_73319.1	chr8	105226720	105226920	+	1	NA	NA	NA	1632	NM_145604	234678	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	0.000000	0.353234	-6(TTTTTTAAACAC,+,0.00)
mm_70616.1	chr8	13435411	13435611	+	1	NA	NA	NA	52	NM_001143672	272465	Mm.250502	NM_001143671	ENSMUSG00000038457	Tmem255b	Fam70b|Gm687	transmembrane protein 255B	protein-coding	0.030000	0.597015	
mm_131264.1	chr16	10827833	10828033	+	1	NA	NA	NA	-7126	NM_001162932	223970	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.020000	0.517413	
mm_71992.1	chr8	70617631	70617831	+	1	NA	NA	NA	887	NM_153074	211228	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0.010000	0.562189	
mm_39261.1	chr5	3557647	3557847	+	1	NA	NA	NA	13914	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.005000	0.343284	
mm_167680.1	chr9	78532642	78532842	+	1	NA	NA	NA	-51018	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.010000	0.447761	80(GTTTTTATACTG,+,0.00)
mm_14146.1	chr2	126552716	126552916	+	1	NA	NA	NA	-208	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0.040000	0.502488	-87(GCGTTTATAAGG,-,0.00)
mm_4137.1	chr1	170644479	170644679	+	1	NA	NA	NA	47	NM_177068	320078	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.090000	0.716418	
mm_88570.1	chr10	79669387	79669587	+	1	NA	NA	NA	77	NM_148934	110012	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	0.130000	0.686567	
mm_82037.1	chr9	122117286	122117486	+	1	NA	NA	NA	120	NM_133741	20623	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0.155000	0.771144	
mm_24248.1	chr3	89146050	89146250	+	1	NA	NA	NA	9527	NM_001099779	18770	Mm.383180	NM_013631	ENSMUSG00000041237	Pklr	Pk-1|Pk1|R-PK	pyruvate kinase liver and red blood cell	protein-coding	0.010000	0.482587	
mm_14609.1	chr2	136532151	136532351	+	1	NA	NA	NA	-70	NM_175667	319196	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0.065000	0.661692	
mm_93404.1	chr10	107912181	107912381	-	1	NA	NA	NA	-147	NM_001177567	628870	Mm.336090	NM_001177567	ENSMUSG00000091455	Otogl	EG628870|Gm6924	otogelin-like	protein-coding	0.015000	0.452736	
mm_19821.1	chr2	110839959	110840159	-	1	NA	NA	NA	110185	NM_001128103	228432	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding	0.015000	0.467662	
mm_128067.1	chr15	26895482	26895682	-	1	NA	NA	NA	-18	NM_176959	448987	Mm.253378	NM_176959	ENSMUSG00000043556	Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding	0.110000	0.716418	-91(CCCCTTTAAAAG,-,0.00),-90(CCCTTTAAAAGG,+,0.00),-90(CCCTTTAAAAGG,-,0.00),-89(CCTTTAAAAGGC,+,0.00),-88(CTTTAAAAGGCC,+,0.00)
mm_90410.1	chr10	127420290	127420490	+	1	NA	NA	NA	-477	NM_027900	71750	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.025000	0.482587	
mm_90452.1	chr10	127706700	127706900	+	1	NA	NA	NA	1544	NM_001081219	432516	Mm.90450	NM_001081219	ENSMUSG00000025401	Myo1a	BBM-I|Myhl	myosin IA	protein-coding	0.020000	0.552239	
mm_58093.1	chr6	137519642	137519842	-	1	NA	NA	NA	153	NM_001271589	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.010000	0.532338	
mm_48611.1	chr5	144358013	144358213	-	1	NA	NA	NA	-1	NM_025833	66898	Mm.18814	NM_025833	ENSMUSG00000038859	Baiap2l1	1300006M19Rik|AI585895|IRTKS	BAI1-associated protein 2-like 1	protein-coding	0.095000	0.716418	
mm_34474.1	chr4	148192952	148193152	+	1	NA	NA	NA	32384	NM_176848	230904	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0.025000	0.497512	
mm_26943.1	chr3	20266214	20266414	-	1	NA	NA	NA	9419	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.010000	0.398010	
mm_7090.1	chr1	88584687	88584887	-	1	NA	NA	NA	33270	NR_037971	100503197	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.005000	0.537313	
mm_72181.1	chr8	72319752	72319952	+	1	NA	NA	NA	790	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.155000	0.810945	
mm_86141.1	chr9	116980574	116980774	-	1	NA	NA	NA	271809	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.015000	0.402985	-69(CCGTTTATAAAC,-,0.00),-67(GTTTATAAACAC,+,0.00)
mm_43501.1	chr5	136977977	136978177	+	1	NA	NA	NA	8827	NM_001310747	70103	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	0.010000	0.447761	-33(AACTATAAAAGA,-,0.00)
mm_49883.1	chr6	38662940	38663140	+	1	NA	NA	NA	-29	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.160000	0.805970	
mm_143364.1	chr17	67354174	67354374	-	1	NA	NA	NA	185	NM_008984	19274	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.135000	0.736318	
mm_139130.1	chr17	47505078	47505278	+	1	NA	NA	NA	127	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.070000	0.592040	
mm_137517.1	chr17	27115887	27116087	+	1	NA	NA	NA	17904	NM_026063	67267	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	0.065000	0.601990	
mm_138439.1	chr17	35122659	35122859	+	1	NA	NA	NA	-193	NM_032460	81845	Mm.7405	NM_032460	ENSMUSG00000092417	Gpank1	Bat-4|Bat4|D17H6S54E|G5	G patch domain and ankyrin repeats 1	protein-coding	0.005000	0.393035	
mm_113581.1	chr13	40860072	40860272	+	1	NA	NA	NA	404	NM_023887	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.040000	0.492537	
mm_108071.1	chr12	73941883	73942083	+	1	NA	NA	NA	-22547	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.005000	0.388060	-56(CATTATAAAGCC,+,0.00)
mm_99043.1	chr11	98964774	98964974	+	1	NA	NA	NA	4403	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.015000	0.572139	
mm_9661.1	chr1	177796441	177796641	-	1	NA	NA	NA	-32	NM_007422	11566	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.125000	0.771144	
mm_157787.1	chrX	73824808	73825008	-	1	NA	NA	NA	61	NM_001029868	245469	Mm.103782	NM_001029868	ENSMUSG00000002006	Pdzd4	B230341P03|D130075J17Rik|Kiaa1444-hp|LU1|PDZRN4L|Pdzk4|Pdzrnk4l|Xlu	PDZ domain containing 4	protein-coding	0.125000	0.726368	
mm_35724.1	chr4	44704379	44704579	-	1	NA	NA	NA	1679	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0.125000	0.731343	
mm_61743.1	chr7	82535675	82535875	+	1	NA	NA	NA	112753	NM_177894	330577	Mm.222812	NM_177894	ENSMUSG00000038570	Saxo2	1700129I04Rik|D030069K18|Fam154b	stabilizer of axonemal microtubules 2	protein-coding	0.005000	0.462687	
mm_67943.1	chr7	100371681	100371881	-	1	NA	NA	NA	115	NM_028292	72590	Mm.177502	NM_028292	ENSMUSG00000030718	Ppme1	1110069N17Rik|2700017M01Rik|PME-1|Pme1	protein phosphatase methylesterase 1	protein-coding	0.075000	0.636816	
mm_29736.1	chr3	126922646	126922846	-	1	NA	NA	NA	20640	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.000000	0.373134	
mm_37.1	chr1	6453724	6453924	+	1	NA	NA	NA	-33407	NM_001244693	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.353234	
mm_107573.1	chr12	44329101	44329301	+	1	NA	NA	NA	316	NM_001146031	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.060000	0.606965	
mm_150550.1	chr19	39321524	39321724	+	1	NA	NA	NA	34539	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.000000	0.427861	
mm_130218.1	chr15	95772550	95772750	-	1	NA	NA	NA	-18193	NM_175344	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.040000	0.562189	
mm_103853.1	chr11	83192094	83192294	-	1	NA	NA	NA	864	NM_011409	20557	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	0.005000	0.502488	
mm_57951.1	chr6	135117884	135118084	-	1	NA	NA	NA	299	NM_053118	93746	Mm.49902	NM_053118	ENSMUSG00000030205	Gprc5d	-	G protein-coupled receptor, family C, group 5, member D	protein-coding	0.005000	0.303483	
mm_84493.1	chr9	66847575	66847775	-	1	NA	NA	NA	-12969	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.030000	0.542289	
mm_41853.1	chr5	104439409	104439609	+	1	NA	NA	NA	3317	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.025000	0.482587	
mm_67427.1	chr7	80368881	80369081	-	1	NA	NA	NA	2394	NM_172903	140481	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	0.025000	0.432836	
mm_161129.1	chr12	112732339	112732539	+	1	NA	NA	NA	-883	NR_105905	102466989		NR_105905	ENSMUSG00000099165	Mir6940	Gm27655|mmu-mir-6940	microRNA 6940	ncRNA	0.030000	0.567164	
mm_93777.1	chr10	120476182	120476382	-	1	NA	NA	NA	187	NM_001347170	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0.070000	0.671642	
mm_133537.1	chr16	91056670	91056870	+	1	NA	NA	NA	12375	NM_001163695	74387	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.040000	0.517413	
mm_36284.1	chr4	63861011	63861211	-	1	NA	NA	NA	173	NM_009403	21949	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.010000	0.512438	39(GACTATATAAAG,-,0.00)
mm_137718.1	chr17	29100232	29100432	+	1	NA	NA	NA	6563	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.000000	0.582090	
mm_131326.1	chr16	13109588	13109788	+	1	NA	NA	NA	-48	NM_015769	50505	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	0.095000	0.597015	
mm_127315.1	chr15	100269087	100269287	+	1	NA	NA	NA	-11650	NM_183109	75002	Mm.261400	NM_183109	ENSMUSG00000045631	Tmprss12	4930478A21Rik	transmembrane (C-terminal) protease, serine 12	protein-coding	0.010000	0.547264	83(GCTTTTAAGTTC,+,0.00)
mm_119279.1	chr14	34310723	34310923	+	1	NA	NA	NA	96	NM_008133	14661	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	0.120000	0.716418	-33(CGGCTTAAAAGG,-,0.00),-31(GCTTAAAAGGGC,+,0.00)
mm_51027.1	chr6	65432391	65432591	+	1	NA	NA	NA	51197	NM_175524	243407	Mm.389758	NM_175524	ENSMUSG00000029917	C130060K24Rik	-	RIKEN cDNA C130060K24 gene	protein-coding	0.015000	0.417910	
mm_33228.1	chr4	126756910	126757110	+	1	NA	NA	NA	3240	NM_001035526	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.020000	0.507463	
mm_144768.1	chr18	35773703	35773903	+	1	NA	NA	NA	2244	NM_019912	56550	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0.005000	0.417910	
mm_168642.1	chr1	185076632	185076832	-	1	NA	NA	NA	-77183	NM_145515	226778	Mm.7445	NM_145515	ENSMUSG00000026620	Mark1	AW491150|B930025N23Rik|Emk3|Par-1c|mKIAA1477|mPar-1c	MAP/microtubule affinity regulating kinase 1	protein-coding	0.040000	0.517413	-30(TTCTATAAAAAC,-,0.00)
mm_155120.1	chrX	48870319	48870519	+	1	NA	NA	NA	7294	NM_001085499	209005	Mm.336054	NM_001085499	ENSMUSG00000079606	Gm595	-	predicted gene 595	protein-coding	0.010000	0.492537	
mm_101115.1	chr11	11967484	11967684	-	1	NA	NA	NA	60387	NM_001177629	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.030000	0.562189	
mm_35408.1	chr4	34756151	34756351	-	1	NA	NA	NA	8	NM_001033255	214568	Mm.297405	NM_001033255	ENSMUSG00000071015	Gm136	-	predicted gene 136	protein-coding	0.000000	0.427861	-93(GCTTTTATGAGC,+,0.00)
mm_128557.1	chr15	55906793	55906993	-	1	NA	NA	NA	56	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding	0.055000	0.626866	
mm_172356.1	chr7	116084497	116084697	-	1	NA	NA	NA	8552	NR_029433	69350	Mm.440425	NR_029433	ENSMUSG00000087621	1700003G18Rik	2610312K03Rik	RIKEN cDNA 1700003G18 gene	ncRNA	0.040000	0.492537	
mm_36531.1	chr4	86611894	86612094	-	1	NA	NA	NA	28	NM_173400	230376	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	0.100000	0.651741	
mm_14289.1	chr2	128819404	128819604	+	1	NA	NA	NA	1201	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.010000	0.378109	
mm_12984.1	chr2	90847151	90847351	+	1	NA	NA	NA	96	NM_001317242	56428	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	0.130000	0.716418	
mm_134360.1	chr16	16863780	16863980	-	1	NA	NA	NA	105	NM_001190325	16136	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	0.005000	0.522388	
mm_39166.1	chr4	155653110	155653310	-	1	NA	NA	NA	80	NM_001320235	26561	Mm.29373	NM_011985	ENSMUSG00000029061	Mmp23	CA-MMP	matrix metallopeptidase 23	protein-coding	0.095000	0.701493	
mm_74196.1	chr8	123805875	123806075	+	1	NA	NA	NA	-21	NM_009003	19341	Mm.9221	NM_009003	ENSMUSG00000019478	Rab4a	AI848268|Rab4	RAB4A, member RAS oncogene family	protein-coding	0.110000	0.751244	
mm_31399.1	chr4	48045285	48045485	+	1	NA	NA	NA	80	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.120000	0.691542	
mm_23014.1	chr3	34560118	34560318	+	1	NA	NA	NA	-163	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA	0.015000	0.333333	
mm_86649.1	chr10	17723125	17723325	+	1	NA	NA	NA	-3	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.075000	0.597015	
mm_152417.1	chr19	10669499	10669699	-	1	NA	NA	NA	8472	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.025000	0.557214	
mm_142047.1	chr17	35533857	35534057	-	1	NA	NA	NA	756	NM_020576	57390	Mm.34201	NM_020576	ENSMUSG00000024409	Psors1c2	AI448740|Pcg|SPR1	psoriasis susceptibility 1 candidate 2 (human)	protein-coding	0.035000	0.582090	
mm_172133.1	chr6	34190941	34191141	-	1	NA	NA	NA	-13987	NM_021435	58246	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0.000000	0.522388	-34(GCTTTAAGATCC,+,0.00)
mm_61106.1	chr7	52010606	52010806	+	1	NA	NA	NA	-4688	NM_001160345	75744	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	0.010000	0.378109	
mm_118574.1	chr14	19707935	19708135	+	1	NA	NA	NA	-43222	NM_008695	18074	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.015000	0.477612	50(GTCTCTAAATGG,-,0.00)
mm_113983.1	chr13	52582568	52582768	+	1	NA	NA	NA	-769	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.010000	0.537313	
mm_55067.1	chr6	49050415	49050615	-	1	NA	NA	NA	13997	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.010000	0.472637	
mm_72302.1	chr8	76899758	76899958	+	1	NA	NA	NA	315	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA	0.075000	0.676617	
mm_39776.1	chr5	30105098	30105298	+	1	NA	NA	NA	2	NM_001167879	242915	Mm.332287	NM_001167879	ENSMUSG00000044576	Garem2	Fam59b|Gareml|Gm444	GRB2 associated regulator of MAPK1 subtype 2	protein-coding	0.110000	0.771144	
mm_10620.1	chr2	19381262	19381462	+	1	NA	NA	NA	9726	NM_029619	76467	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	0.010000	0.432836	
mm_79443.1	chr9	56090124	56090324	+	1	NA	NA	NA	248	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.045000	0.616915	
mm_3788.1	chr1	157388789	157388989	+	1	NA	NA	NA	-23463	NR_027984	69953	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	0.005000	0.552239	-33(CACTATAAAAGG,-,0.00)
mm_65361.1	chr7	25005782	25005982	-	1	NA	NA	NA	55	NM_001290469	232975	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.135000	0.771144	-65(GGGCATATGAGG,-,0.00)
mm_43697.1	chr5	139200555	139200755	+	1	NA	NA	NA	18	NM_001256117	77053	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0.150000	0.736318	
mm_61475.1	chr7	75629518	75629718	+	1	NA	NA	NA	174084	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.000000	0.383085	
mm_112349.1	chr12	118301174	118301374	-	1	NA	NA	NA	166	NM_009239	20688	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0.070000	0.661692	
mm_65130.1	chr7	19506590	19506790	-	1	NA	NA	NA	1641	NM_177692	232946	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.015000	0.457711	
mm_1808.1	chr1	81077201	81077401	+	1	NA	NA	NA	-16	NM_172849	241134	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	0.010000	0.472637	
mm_46242.1	chr5	99229360	99229560	-	1	NA	NA	NA	23467	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.030000	0.447761	44(CCTCTTAAACGG,+,0.00)
mm_157919.1	chrX	78583705	78583905	-	1	NA	NA	NA	0	NM_001164275	546336	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	0.075000	0.646766	
mm_29939.1	chr3	132717403	132717603	-	1	NA	NA	NA	33359	NM_001163455	271981	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0.010000	0.388060	
mm_17060.1	chr2	22416621	22416821	-	1	NA	NA	NA	189218	NM_148413	667663	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding	0.005000	0.447761	
mm_130698.1	chr15	100684561	100684761	-	1	NA	NA	NA	3259	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.030000	0.552239	
mm_117871.1	chr13	98890905	98891105	-	1	NA	NA	NA	37	NM_001048267	238799	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.115000	0.691542	
mm_24124.1	chr3	88200236	88200436	+	1	NA	NA	NA	-14835	NR_037276	100526540		NR_037276	ENSMUSG00000092988	Mir3093	mir-3093|mmu-mir-3093	microRNA 3093	ncRNA	0.045000	0.567164	
mm_61125.1	chr7	55794132	55794332	+	1	NA	NA	NA	84	NM_146190	233276	Mm.284306	NM_146190	ENSMUSG00000033790	Tubgcp5	B130010C12Rik|GCP5|mKIAA1899	tubulin, gamma complex associated protein 5	protein-coding	0.095000	0.646766	
mm_79015.1	chr9	45839789	45839989	+	1	NA	NA	NA	1344	NM_011792	23821	Mm.24044	NM_011792	ENSMUSG00000032086	Bace1	ASP2|Bace|C76936	beta-site APP cleaving enzyme 1	protein-coding	0.005000	0.552239	
mm_58703.1	chr7	12928217	12928417	+	1	NA	NA	NA	901	NM_029809	381845	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0.140000	0.746269	
mm_107683.1	chr12	54656711	54656911	+	1	NA	NA	NA	-239	NM_134054	104725	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	0.055000	0.582090	30(GCCCTTAAGAGG,-,0.00),31(CCCTTAAGAGGC,+,0.00)
mm_27639.1	chr3	62924162	62924362	-	1	NA	NA	NA	-319122	NM_177346	229357	Mm.95181	NM_177346	ENSMUSG00000043441	Gpr149	9630018L10Rik|Ieda|PGR10|R35	G protein-coupled receptor 149	protein-coding	0.030000	0.457711	
mm_135829.1	chr16	58523222	58523422	-	1	NA	NA	NA	-10	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.095000	0.691542	
mm_81225.1	chr9	107635035	107635235	+	1	NA	NA	NA	207	NM_008138	14678	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	0.095000	0.636816	
mm_129383.1	chr15	78191458	78191658	-	1	NA	NA	NA	12679	NM_001330686	19293	Mm.2766	NM_013645	ENSMUSG00000005716	Pvalb	PV|Parv|Pva	parvalbumin	protein-coding	0.030000	0.532338	
mm_586.1	chr1	39449417	39449617	+	1	NA	NA	NA	29230	NM_018775	54610	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.025000	0.517413	
mm_89622.1	chr10	96185862	96186062	+	1	NA	NA	NA	-40245	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.010000	0.407960	
mm_150326.1	chr19	34574512	34574712	+	1	NA	NA	NA	-8917	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.005000	0.467662	
mm_85133.1	chr9	95750252	95750452	-	1	NA	NA	NA	6	NM_001311123	22063	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0.100000	0.716418	
mm_167675.1	chr9	75538152	75538352	+	1	NA	NA	NA	21405	NM_016963	50875	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0.005000	0.383085	-57(CTTTATATACTC,+,0.00),38(CCTTATATATAG,+,0.00)
mm_165741.1	chr3	107216123	107216323	-	1	NA	NA	NA	5509	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.457711	
mm_80507.1	chr9	78615727	78615927	+	1	NA	NA	NA	281	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.070000	0.631841	-76(GCTTTTAGGCGC,+,0.00)
mm_28298.1	chr3	89101919	89102119	-	1	NA	NA	NA	-52	NM_001253751	110196	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	0.045000	0.547264	
mm_55203.1	chr6	52208562	52208762	-	1	NA	NA	NA	-38	NM_010454	15403	Mm.222030	NM_010454	ENSMUSG00000043219	Hoxa6	Hox-1.2	homeobox A6	protein-coding	0.045000	0.512438	
mm_140360.1	chr17	86831520	86831720	+	1	NA	NA	NA	77756	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.010000	0.497512	
mm_115346.1	chr13	112660577	112660777	+	1	NA	NA	NA	-89	NM_178746	268706	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0.065000	0.626866	
mm_165288.1	chr2	85260005	85260205	+	1	NA	NA	NA	-63406	NM_001033346	241528	Mm.291095	NM_001033346	ENSMUSG00000075224	Lrrc55	A330097E02Rik|Gm351	leucine rich repeat containing 55	protein-coding	0.000000	0.562189	
mm_34014.1	chr4	137993827	137994027	+	1	NA	NA	NA	471	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.110000	0.756219	
mm_61017.1	chr7	49397690	49397890	+	1	NA	NA	NA	151601	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.020000	0.502488	
mm_165889.1	chr4	43791530	43791730	+	1	NA	NA	NA	-9303	NR_033638	29848	Mm.424497	NR_033638	ENSMUSG00000111338	Olfr29-ps1	MOR262-11|MTPCR52|Olfr158|Olfr29|Olfr37d|mOR37d	olfactory receptor 29, pseudogene 1	pseudo	0.010000	0.353234	
mm_144067.1	chr17	90980222	90980422	-	1	NA	NA	NA	109283	NM_001346957	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.000000	0.303483	
mm_86886.1	chr10	22158475	22158675	+	1	NA	NA	NA	-34	NM_009016	19368	Mm.458004	NM_009016		Raet1a	RAE-1alpha|Rae1alpha|Raet1	retinoic acid early transcript 1, alpha	protein-coding	0.105000	0.726368	
mm_151911.1	chr19	5799536	5799736	-	1	NA	NA	NA	3036	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.000000	0.318408	-2(GCTTTAATGACC,+,0.00),34(GCTTTTATATTA,+,0.00)
mm_80858.1	chr9	98485987	98486187	+	1	NA	NA	NA	-4450	NM_009034	19660	Mm.12825	NM_009034	ENSMUSG00000032454	Rbp2	Crbp-2|CrbpII|Rbp-2	retinol binding protein 2, cellular	protein-coding	0.005000	0.512438	
mm_44115.1	chr5	149439579	149439779	+	1	NA	NA	NA	19	NM_001310765	75860	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	0.070000	0.611940	
mm_134333.1	chr16	16473882	16474082	-	1	NA	NA	NA	53429	NM_001301818	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.000000	0.278607	
mm_129467.1	chr15	78670379	78670579	-	1	NA	NA	NA	47634	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0.020000	0.592040	
mm_8929.1	chr1	164086817	164087017	-	1	NA	NA	NA	24841	NM_001164059	20343	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.005000	0.393035	
mm_14724.1	chr2	144032994	144033194	+	1	NA	NA	NA	-8	NM_001044750	403171	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	0.020000	0.512438	
mm_65311.1	chr7	24765918	24766118	-	1	NA	NA	NA	-5707	NM_026862	68891	Mm.292848	NM_026862	ENSMUSG00000052212	Cd177	1190003K14Rik|Pdp3	CD177 antigen	protein-coding	0.020000	0.497512	
mm_161844.1	chr18	7297832	7298032	-	1	NA	NA	NA	-31	NM_001081393	74934	Mm.107918	NM_001081393	ENSMUSG00000061802	Armc4	4930463I21Rik|b2b227.1Clo|b2b643Clo	armadillo repeat containing 4	protein-coding	0.070000	0.631841	
mm_76231.1	chr8	83573407	83573607	-	1	NA	NA	NA	6749	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.020000	0.636816	-33(GCCTTTAGAGGC,+,0.00)
mm_11180.1	chr2	28840377	28840577	+	1	NA	NA	NA	71	NM_001033294	227674	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	0.065000	0.626866	
mm_134495.1	chr16	18811497	18811697	-	1	NA	NA	NA	42	NM_001161623	12544	Mm.1248	NM_009862	ENSMUSG00000000028	Cdc45	Cdc45l	cell division cycle 45	protein-coding	0.070000	0.557214	
mm_104805.1	chr11	98775157	98775357	-	1	NA	NA	NA	120	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.055000	0.597015	
mm_27894.1	chr3	79287213	79287413	-	1	NA	NA	NA	-58063	NM_001142953	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.115000	0.731343	
mm_93824.1	chr10	121476217	121476417	-	1	NA	NA	NA	-67	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.085000	0.761194	
mm_76742.1	chr8	95202740	95202940	-	1	NA	NA	NA	-60300	NM_001145831	16582	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.030000	0.592040	
mm_151915.1	chr19	5799650	5799850	-	1	NA	NA	NA	2922	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.020000	0.462687	
mm_25495.1	chr3	109340671	109340871	+	1	NA	NA	NA	88	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.175000	0.796020	
mm_52064.1	chr6	97439450	97439650	+	1	NA	NA	NA	19736	NM_001346639	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.035000	0.532338	
mm_8360.1	chr1	150455865	150456065	-	1	NA	NA	NA	10200	NM_021400	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.010000	0.447761	
mm_93060.1	chr10	88765490	88765690	-	1	NA	NA	NA	34176	NM_025859	104303	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0.025000	0.512438	-78(GTCTTTAAATGG,-,0.00)
mm_97801.1	chr11	82954466	82954666	+	1	NA	NA	NA	2464	NM_183201	327978	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	0.010000	0.417910	
mm_135050.1	chr16	33380605	33380805	-	1	NA	NA	NA	31	NR_045709	100502742	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0.145000	0.726368	
mm_9354.1	chr1	172147844	172148044	-	1	NA	NA	NA	-71	NM_153555	98193	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	0.075000	0.601990	
mm_62711.1	chr7	110768047	110768247	+	1	NA	NA	NA	-59	NM_001276301	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.020000	0.567164	
mm_1100.1	chr1	59763340	59763540	+	1	NA	NA	NA	-839	NM_007561	12168	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0.155000	0.810945	
mm_6895.1	chr1	84696092	84696292	-	1	NA	NA	NA	29	NM_152915	227325	Mm.292560	NM_152915	ENSMUSG00000036766	Dner	A930026D19Rik|BET|Bret	delta/notch-like EGF repeat containing	protein-coding	0.065000	0.592040	
mm_82375.1	chr9	14615333	14615533	-	1	NA	NA	NA	-433	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.015000	0.502488	
mm_139496.1	chr17	56241646	56241846	+	1	NA	NA	NA	-1242	NR_029827	723883		NR_029827	ENSMUSG00000065491	Mir7b	Mirn7b|mir-7b|mmu-mir-7b	microRNA 7b	ncRNA	0.045000	0.552239	
mm_143923.1	chr17	85618451	85618651	-	1	NA	NA	NA	-155	NR_038082	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.075000	0.646766	
mm_136151.1	chr16	87634850	87635050	-	1	NA	NA	NA	-64004	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.000000	0.517413	-34(GGGTATAAATGC,-,0.00)
mm_120001.1	chr14	55618061	55618261	+	1	NA	NA	NA	-5	NM_020002	56739	Mm.23149	NM_020002	ENSMUSG00000002324	Rec8	Rec8L1|mrec	REC8 meiotic recombination protein	protein-coding	0.075000	0.626866	
mm_24211.1	chr3	88625474	88625674	+	1	NA	NA	NA	4180	NM_001198912	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.412935	
mm_132485.1	chr16	36913631	36913831	+	1	NA	NA	NA	-16542	NR_040476	68306	Mm.399193	NR_040476	ENSMUSG00000084834	4930565N06Rik	4930428L02Rik	RIKEN cDNA 4930565N06 gene	ncRNA	0.030000	0.522388	
mm_80562.1	chr9	83587881	83588081	+	1	NA	NA	NA	39643	NM_172507	212531	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.025000	0.447761	-84(CTCCTTTAAAAC,-,0.00),-82(CCTTTAAAACTA,+,0.00)
mm_94454.1	chr11	6389486	6389686	+	1	NA	NA	NA	-5539	NM_001005867	52915	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.145000	0.776119	
mm_79603.1	chr9	58489726	58489926	+	1	NA	NA	NA	1223	NM_176921	319477	Mm.153674	NM_176921	ENSMUSG00000066607	6030419C18Rik	-	RIKEN cDNA 6030419C18 gene	protein-coding	0.020000	0.547264	
mm_90662.1	chr10	128805700	128805900	+	1	NA	NA	NA	124	NM_028873	74330	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	0.055000	0.601990	
mm_11226.1	chr2	29788214	29788414	+	1	NA	NA	NA	51	NM_178693	227683	Mm.245948	NM_178693	ENSMUSG00000026798	Coq4	A330041N06|D2Ertd97e	coenzyme Q4	protein-coding	0.100000	0.671642	
mm_65168.1	chr7	19677850	19678050	-	1	NA	NA	NA	-9	NM_001277944	11813	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0.025000	0.517413	-33(AGCTTTAAAGGA,-,0.00),-32(GCTTTAAAGGAA,+,0.00)
mm_19504.1	chr2	93744524	93744724	-	1	NA	NA	NA	77944	NM_010163	14043	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	0.005000	0.562189	
mm_161782.1	chr17	43426856	43427056	+	1	NA	NA	NA	37490	NM_001081178	224792	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	0.025000	0.452736	
mm_120229.1	chr14	62862415	62862615	+	1	NA	NA	NA	-3027	NR_105860	102465311		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.010000	0.378109	10(GCTTTTATAGTC,+,0.00)
mm_216.1	chr1	16688413	16688613	+	1	NA	NA	NA	57	NM_016923	17087	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0.035000	0.412935	
mm_152256.1	chr19	8773481	8773681	-	1	NA	NA	NA	886	NR_028419	67706	Mm.45155	NM_026325	ENSMUSG00000003680	Tmem179b	0610031L02Rik|1500003K22Rik|1810059G22Rik	transmembrane protein 179B	protein-coding	0.010000	0.547264	
mm_134756.1	chr16	23225173	23225373	-	1	NA	NA	NA	533	NM_145933	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.095000	0.711443	
mm_147023.1	chr18	34651587	34651787	-	1	NA	NA	NA	49	NM_178347	52563	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	0.090000	0.577114	
mm_87599.1	chr10	57645807	57646007	+	1	NA	NA	NA	38	NM_001039053	18768	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.010000	0.477612	
mm_102710.1	chr11	67011631	67011831	-	1	NA	NA	NA	-13423	NM_001291042	338369	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	0.010000	0.477612	41(GTGCTTATAAGA,-,0.00),43(GCTTATAAGAGG,-,0.00)
mm_55695.1	chr6	72851179	72851379	-	1	NA	NA	NA	48013	NM_001347231	74287	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0.000000	0.462687	
mm_48208.1	chr5	137600685	137600885	-	1	NA	NA	NA	-77	NM_001254762	68929	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	0.085000	0.641791	
mm_78633.1	chr9	40050299	40050499	+	1	NA	NA	NA	-159	NR_033613	72224	Mm.235535	NR_033613	ENSMUSG00000101963	1700001J11Rik	-	ring finger protein 19A pseudogene	pseudo	0.070000	0.587065	
mm_126515.1	chr15	81835793	81835993	+	1	NA	NA	NA	22433	NM_020507	57259	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.015000	0.457711	-42(CTTTATAAACTC,+,0.00),-24(GAGTTTATAAAG,-,0.00),-22(GTTTATAAAGAG,+,0.00)
mm_90378.1	chr10	127266174	127266374	+	1	NA	NA	NA	12	NM_001190453	69654	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	0.070000	0.616915	
mm_144225.1	chr18	9958067	9958267	+	1	NA	NA	NA	-13	NM_153552	225160	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	0.100000	0.636816	
mm_94883.1	chr11	26387103	26387303	+	1	NA	NA	NA	119	NR_102382	67030	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	0.070000	0.572139	
mm_106847.1	chr12	8007811	8008011	+	1	NA	NA	NA	30234	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.402985	
mm_52340.1	chr6	110713983	110714183	+	1	NA	NA	NA	68485	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.005000	0.278607	
mm_39432.1	chr5	16553687	16553887	+	1	NA	NA	NA	-114	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.025000	0.487562	
mm_153294.1	chr19	37693000	37693200	-	1	NA	NA	NA	-4708	NM_007811	13082	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0.135000	0.716418	
mm_75319.1	chr8	41407594	41407794	-	1	NA	NA	NA	9424	NM_013522	14300	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	0.015000	0.363184	-80(TTTTTTAAACCG,+,0.00)
mm_69658.1	chr7	139978593	139978793	-	1	NA	NA	NA	62	NM_001347614	381933	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0.070000	0.631841	
mm_46448.1	chr5	105116595	105116795	-	1	NA	NA	NA	-6403	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.000000	0.368159	
mm_147256.1	chr18	38634448	38634648	-	1	NA	NA	NA	-33280	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.025000	0.492537	
mm_27592.1	chr3	59130586	59130786	-	1	NA	NA	NA	76	NM_001008497	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.015000	0.482587	-47(GGGGTTAAAAGG,-,0.00)
mm_64126.1	chr7	141132390	141132590	+	1	NA	NA	NA	1204	NM_013782	27388	Mm.293591	NM_013782	ENSMUSG00000025495	Ptdss2	AI481134|AI988017|PSS2	phosphatidylserine synthase 2	protein-coding	0.005000	0.457711	
mm_129335.1	chr15	77829506	77829706	-	1	NA	NA	NA	12569	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.005000	0.517413	
mm_97837.1	chr11	83065001	83065201	+	1	NA	NA	NA	-11	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.000000	0.482587	11(GCTTTAATGCAG,+,0.00)
mm_118143.1	chr13	105054505	105054705	-	1	NA	NA	NA	325	NM_029879	52882	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.110000	0.696517	
mm_126434.1	chr15	80597770	80597970	+	1	NA	NA	NA	25273	NM_001289442	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.015000	0.462687	
mm_77893.1	chr9	7347436	7347636	+	1	NA	NA	NA	162	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.398010	43(TCTTTAATAGTT,+,0.00)
mm_138856.1	chr17	42316573	42316773	+	1	NA	NA	NA	726	NM_028474	627626	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	0.050000	0.611940	-29(TGCTTTTTAAGA,-,0.00)
mm_120349.1	chr14	63899667	63899867	+	1	NA	NA	NA	39455	NM_028228	72400	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	0.030000	0.562189	
mm_159031.1	chr1	175766698	175766898	+	1	NA	NA	NA	68205	NM_029453	75820	Mm.50361	NM_029453	ENSMUSG00000026523	Wdr64	4930415O10Rik|4930511H01Rik	WD repeat domain 64	protein-coding	0.000000	0.363184	-60(CCTTTTATACTC,+,0.00)
mm_7741.1	chr1	130911458	130911658	-	1	NA	NA	NA	-262	NM_021380	58181	Mm.103794	NM_021380	ENSMUSG00000026416	Il20	Zcyto10	interleukin 20	protein-coding	0.015000	0.497512	
mm_110673.1	chr12	65172447	65172647	-	1	NA	NA	NA	33	NM_172578	217653	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	0.095000	0.666667	
mm_129008.1	chr15	74883014	74883214	-	1	NA	NA	NA	-1410	NM_025929	67038	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.005000	0.472637	
mm_107048.1	chr12	16170353	16170553	+	1	NA	NA	NA	-353668	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.015000	0.467662	
mm_129659.1	chr15	81070846	81071046	-	1	NA	NA	NA	34101	NM_153049	223701	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.000000	0.318408	
mm_114930.1	chr13	95711066	95711266	+	1	NA	NA	NA	14246	NM_010170	14064	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	0.010000	0.437811	71(AGCCATAAAAAC,-,0.00),73(CCATAAAAACCC,+,0.00)
mm_9733.1	chr1	180229925	180230125	-	1	NA	NA	NA	15925	NM_011183	19165	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.015000	0.592040	
mm_17757.1	chr2	32775288	32775488	-	1	NA	NA	NA	-49	NM_001290566	338348	Mm.475130	NM_177384	ENSMUSG00000039021	Ttc16	1200002K10Rik	tetratricopeptide repeat domain 16	protein-coding	0.035000	0.587065	
mm_73605.1	chr8	109999206	109999406	+	1	NA	NA	NA	8870	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.025000	0.522388	
mm_82012.1	chr9	121719060	121719260	+	1	NA	NA	NA	-21	NM_010918	18087	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0.145000	0.726368	
mm_134897.1	chr16	29946416	29946616	-	1	NA	NA	NA	32608	NR_037689	328657	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.015000	0.577114	
mm_88971.1	chr10	81413992	81414192	+	1	NA	NA	NA	2205	NR_106141	102465778		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.060000	0.646766	
mm_125483.1	chr15	54600801	54601001	+	1	NA	NA	NA	29535	NM_178920	105853	Mm.410994	NM_178920	ENSMUSG00000024479	Mal2	AI461653	mal, T cell differentiation protein 2	protein-coding	0.005000	0.363184	54(CTTTTTAAATGC,+,0.00)
mm_169661.1	chr15	58933674	58933874	+	1	NA	NA	NA	-36	NM_023172	66218	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.110000	0.681592	
mm_73255.1	chr8	104340264	104340464	+	1	NA	NA	NA	-230	NM_024217	68119	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.020000	0.547264	
mm_64748.1	chr7	4783749	4783949	-	1	NA	NA	NA	909	NM_030028	78052	Mm.160043	NM_030028	ENSMUSG00000013091	Tmem190	4930572D21Rik	transmembrane protein 190	protein-coding	0.030000	0.582090	-86(TTCTAGAAAAGG,-,0.00)
mm_92223.1	chr10	68278748	68278948	-	1	NA	NA	NA	-122	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.015000	0.427861	
mm_137195.1	chr17	23829156	23829356	+	1	NA	NA	NA	-147	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.085000	0.641791	
mm_145687.1	chr18	61725627	61725827	+	1	NA	NA	NA	604	NM_021296	17714	Mm.269657	NM_021296	ENSMUSG00000024580	Grpel2	mt-GrpE#2|mt-Grpel2	GrpE-like 2, mitochondrial	protein-coding	0.015000	0.407960	
mm_89037.1	chr10	82812104	82812304	+	1	NA	NA	NA	81	NR_038042	70003	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	0.110000	0.736318	
mm_136701.1	chr17	7576048	7576248	+	1	NA	NA	NA	-190843	NM_001142539	667055	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	ENSMUSG00000056133	predicted gene 9992	protein-coding	0.010000	0.487562	
mm_100936.1	chr11	6520782	6520982	-	1	NA	NA	NA	76	NM_178440	246177	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0.020000	0.567164	
mm_9522.1	chr1	173766815	173767015	-	1	NA	NA	NA	4	NM_008329	15951	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.005000	0.457711	
mm_25847.1	chr3	129474625	129474825	+	1	NA	NA	NA	41052	NR_033594	435755	Mm.430561	NR_033594	ENSMUSG00000105712	Pou5f1-rs4	EG435755|Gm5712|Oct4P1|Otf3-rs4|Otf3d	POU domain, class 5, transcription factor 1, related sequence 4	pseudo	0.030000	0.492537	
mm_91977.1	chr10	61648381	61648581	-	1	NA	NA	NA	-140	NM_026438	67895	Mm.28897	NM_026438	ENSMUSG00000020089	Ppa1	2010317E03Rik|Pyp	pyrophosphatase (inorganic) 1	protein-coding	0.120000	0.731343	
mm_117068.1	chr13	59084137	59084337	-	1	NA	NA	NA	276540	NM_001025074	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.010000	0.457711	
mm_37728.1	chr4	129558736	129558936	-	1	NA	NA	NA	-464	NM_010693	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.025000	0.507463	
mm_130151.1	chr15	91172090	91172290	-	1	NA	NA	NA	19617	NM_011994	26874	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.035000	0.417910	
mm_67589.1	chr7	83653240	83653440	-	1	NA	NA	NA	21323	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.015000	0.393035	-60(GAGTTTAAAAGG,-,0.00)
mm_20949.1	chr2	151670496	151670696	-	1	NA	NA	NA	-2063	NM_001276400	668929	Mm.473683	NM_001114677	ENSMUSG00000074704	Rad21l	Gm14160|MeiRAD21L|Rad21l1	RAD21-like (S. pombe)	protein-coding	0.050000	0.656716	
mm_54921.1	chr6	47807387	47807587	-	1	NA	NA	NA	-3835	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.005000	0.363184	
mm_125125.1	chr15	30172857	30173057	+	1	NA	NA	NA	364	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.160000	0.771144	
mm_73981.1	chr8	120537387	120537587	+	1	NA	NA	NA	78	NM_001145896	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.095000	0.701493	
mm_155408.1	chrX	73358251	73358451	+	1	NA	NA	NA	15730	NM_001160229	27081	Mm.26595	NM_031494	ENSMUSG00000031365	Zfp275	5430431L06Rik|AI593314|DXBay20|DXHXS52|DXPas8	zinc finger protein 275	protein-coding	0.015000	0.457711	
mm_114355.1	chr13	60940118	60940318	+	1	NA	NA	NA	1717	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding	0.015000	0.388060	31(GCTTTTATGAGA,+,0.00)
mm_52287.1	chr6	108662674	108662874	+	1	NA	NA	NA	-1840	NR_104577	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.015000	0.512438	
mm_102171.1	chr11	53979814	53980014	-	1	NA	NA	NA	113	NM_019723	56517	Mm.154284	NM_019723	ENSMUSG00000063652	Slc22a21	Octn3|Slc22a9	solute carrier family 22 (organic cation transporter), member 21	protein-coding	0.130000	0.646766	
mm_151365.1	chr19	55925840	55926040	+	1	NA	NA	NA	30619	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.030000	0.567164	
mm_114472.1	chr13	67863262	67863462	+	1	NA	NA	NA	36	NM_001001185	408058	Mm.177840	NM_001001185	ENSMUSG00000064063	BC048507	-	cDNA sequence BC048507	protein-coding	0.040000	0.497512	
mm_13620.1	chr2	113440824	113441024	+	1	NA	NA	NA	-140	NM_001285459	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.025000	0.512438	-97(CTTTTAAAAACC,+,0.00)
mm_97994.1	chr11	84129577	84129777	+	1	NA	NA	NA	-109	NM_172562	217031	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	0.150000	0.751244	
mm_53980.1	chr6	6861582	6861782	-	1	NA	NA	NA	-1652	NM_010057	13396	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding	0.015000	0.422886	-90(TTCTATAAAAAG,-,0.00)
mm_35171.1	chr4	14826450	14826650	-	1	NA	NA	NA	37	NM_152812	72201	Mm.387724	NM_152812	ENSMUSG00000040550	Otud6b	2600013N14Rik|AU015433	OTU domain containing 6B	protein-coding	0.125000	0.706468	
mm_92813.1	chr10	81407572	81407772	-	1	NA	NA	NA	8625	NR_106141	102465778		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.075000	0.606965	
mm_33966.1	chr4	137594112	137594312	+	1	NA	NA	NA	23	NM_130879	170707	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	0.160000	0.756219	
mm_5860.1	chr1	53773373	53773573	-	1	NA	NA	NA	11742	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.000000	0.373134	-34(GGATTTAAAAAC,-,0.00)
mm_34832.1	chr4	155246766	155246966	+	1	NA	NA	NA	-3100	NM_001190445	67513	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	0.035000	0.631841	-31(CCCCATAAATGC,-,0.00)
mm_46420.1	chr5	104113494	104113694	-	1	NA	NA	NA	494	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding	0.020000	0.527363	
mm_31880.1	chr4	81628173	81628373	+	1	NA	NA	NA	-141260	NR_030570	100124446		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0.025000	0.467662	-33(ACATTTAAAAGC,-,0.00)
mm_54929.1	chr6	48064477	48064677	-	1	NA	NA	NA	-16463	NM_001081382	72306	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	0.040000	0.597015	
mm_154816.1	chrX	14680425	14680625	+	1	NA	NA	NA	430964	NR_033171	67395	Mm.50369	NM_026128	ENSMUSG00000045217	Ppp1r2-ps9	4930403L05Rik	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 9	pseudo	0.005000	0.398010	-58(TGGTTTATAAGA,-,0.00)
mm_171841.1	chr5	151655652	151655852	+	1	NA	NA	NA	-4544	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	0.055000	0.631841	
mm_145798.1	chr18	65248825	65249025	+	1	NA	NA	NA	64	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.030000	0.462687	
mm_163615.1	chr13	53161057	53161257	+	1	NA	NA	NA	124952	NM_013846	26564	Mm.342774	NM_013846	ENSMUSG00000021464	Ror2	Ntrkr2|mRor2	receptor tyrosine kinase-like orphan receptor 2	protein-coding	0.010000	0.472637	
mm_90202.1	chr10	120364055	120364255	+	1	NA	NA	NA	-25368	NR_040626	320626	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	0.055000	0.552239	
mm_101367.1	chr11	23748359	23748559	-	1	NA	NA	NA	22511	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.005000	0.417910	
mm_61959.1	chr7	90283698	90283898	+	1	NA	NA	NA	-18366	NR_111924	75338	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.005000	0.417910	
mm_44252.1	chr5	5380451	5380651	-	1	NA	NA	NA	-300	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.160000	0.791045	
mm_38836.1	chr4	149157974	149158174	-	1	NA	NA	NA	8633	NM_001081274	110208	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.035000	0.517413	
mm_20091.1	chr2	120850501	120850701	-	1	NA	NA	NA	-17	NM_080788	140810	Mm.275698	NM_080788	ENSMUSG00000090100	Ttbk2	2610507N02Rik|AI326283|B930008N24Rik|TTK|Ttbk|Ttbk1|mKIAA0847	tau tubulin kinase 2	protein-coding	0.060000	0.597015	
mm_28918.1	chr3	98857826	98858026	-	1	NA	NA	NA	1868	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.005000	0.522388	
mm_123352.1	chr14	63142363	63142563	-	1	NA	NA	NA	20001	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.015000	0.507463	
mm_155360.1	chrX	70385855	70386055	+	1	NA	NA	NA	42	NM_026787	68618	Mm.293255	NM_026787	ENSMUSG00000045237	1110012L19Rik	-	RIKEN cDNA 1110012L19 gene	protein-coding	0.045000	0.472637	
mm_148143.1	chr18	77047174	77047374	-	1	NA	NA	NA	22	NM_027721	71206	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	0.060000	0.592040	
mm_52458.1	chr6	113695874	113696074	+	1	NA	NA	NA	-1076	NM_001347356	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.005000	0.457711	
mm_115967.1	chr13	23967042	23967242	-	1	NA	NA	NA	24072	NM_145399	214189	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.000000	0.388060	
mm_34745.1	chr4	152296111	152296311	+	1	NA	NA	NA	-1003	NR_037908	57295	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|OTTMUSG00000010406|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	0.020000	0.512438	
mm_163207.1	chr11	99388980	99389180	+	1	NA	NA	NA	284	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.020000	0.606965	
mm_134296.1	chr16	14291263	14291463	-	1	NA	NA	NA	45	NM_001161775	17880	Mm.250705	NM_013607	ENSMUSG00000018830	Myh11	AV071570|SM1|SM2|smMHC	myosin, heavy polypeptide 11, smooth muscle	protein-coding	0.045000	0.562189	-35(GACTCTATAAAG,-,0.00),-33(CTCTATAAAGCC,+,0.00)
mm_21220.1	chr2	155826359	155826559	-	1	NA	NA	NA	466	NM_010579	16418	Mm.271674	NM_010579	ENSMUSG00000027613	Eif6	1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding	0.085000	0.646766	
mm_16630.1	chr2	5714272	5714472	-	1	NA	NA	NA	390	NM_001290374	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.110000	0.706468	
mm_55918.1	chr6	83831593	83831793	-	1	NA	NA	NA	48	NM_146169	232164	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	0.140000	0.731343	
mm_106602.1	chr11	120731891	120732091	-	1	NA	NA	NA	30	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.015000	0.616915	-34(AGCCATAAAAGC,-,0.00)
mm_145464.1	chr18	60247182	60247382	+	1	NA	NA	NA	25985	NM_001034859	225594	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	0.005000	0.373134	
mm_72869.1	chr8	88659918	88660118	+	1	NA	NA	NA	12671	NM_145857	257632	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0.010000	0.353234	
mm_86273.1	chr9	121790987	121791187	-	1	NA	NA	NA	33	NR_027967	74770	Mm.44195	NM_029095	ENSMUSG00000032523	Hhatl	1110011D13Rik|Gup1|Mg56	hedgehog acyltransferase-like	protein-coding	0.015000	0.542289	
mm_43633.1	chr5	138219637	138219837	+	1	NA	NA	NA	-6167	NM_001013773	381680	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0.020000	0.348259	-41(TCTTTTATATGC,+,0.00)
mm_27857.1	chr3	79157279	79157479	-	1	NA	NA	NA	-11504	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.373134	
mm_19382.1	chr2	91236748	91236948	-	1	NA	NA	NA	218	NM_028119	107986	Mm.389334	NM_028119	ENSMUSG00000002109	Ddb2	2610043A19Rik	damage specific DNA binding protein 2	protein-coding	0.060000	0.542289	
mm_57078.1	chr6	122581384	122581584	-	1	NA	NA	NA	20960	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.040000	0.512438	
mm_107368.1	chr12	32850544	32850744	+	1	NA	NA	NA	26528	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.025000	0.407960	
mm_84070.1	chr9	58201485	58201685	-	1	NA	NA	NA	130	NM_001161535	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.075000	0.601990	
mm_101731.1	chr11	42320979	42321179	-	1	NA	NA	NA	-7	NM_001099641	14399	Mm.4915	NM_008068	ENSMUSG00000020428	Gabra6	GABA-ARalpha6|Gabra-6|alpha6	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	protein-coding	0.010000	0.437811	
mm_55290.1	chr6	54566350	54566550	-	1	NA	NA	NA	-68	NM_027268	69938	Mm.41557	NM_027268	ENSMUSG00000019124	Scrn1	2810019K23Rik|6330535A03Rik|AI852905|SES1|mKIAA0193	secernin 1	protein-coding	0.070000	0.706468	
mm_46172.1	chr5	96921070	96921270	-	1	NA	NA	NA	-102	NR_131152	666266	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0.020000	0.447761	
mm_54522.1	chr6	35988922	35989122	-	1	NA	NA	NA	-399062	NM_203491	243764	Mm.448632	NM_203491	ENSMUSG00000045613	Chrm2	AChR-M2|Chrm-2|M2	cholinergic receptor, muscarinic 2, cardiac	protein-coding	0.000000	0.502488	
mm_8072.1	chr1	135510300	135510500	-	1	NA	NA	NA	-55717	NR_049188	100885827		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0.090000	0.621891	
mm_77253.1	chr8	115706009	115706209	-	1	NA	NA	NA	785	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.150000	0.776119	
mm_111204.1	chr12	84361690	84361890	-	1	NA	NA	NA	31	NM_172581	217705	Mm.259468	NM_172581	ENSMUSG00000021234	Fam161b	9330169D17|9830169C18Rik	family with sequence similarity 161, member B	protein-coding	0.055000	0.582090	
mm_173070.1	chrX	136068011	136068211	-	1	NA	NA	NA	125	NM_009749	12069	Mm.94160	NM_009749	ENSMUSG00000042750	Bex2	AL024066|Bex1	brain expressed X-linked 2	protein-coding	0.120000	0.746269	
mm_158446.1	chrX	140542893	140543093	-	1	NA	NA	NA	194	NM_010286	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.040000	0.577114	
mm_124768.1	chr15	6708284	6708484	+	1	NA	NA	NA	3	NM_030168	78757	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.150000	0.726368	
mm_6612.1	chr1	75479221	75479421	-	1	NA	NA	NA	150	NM_001001565	74241	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0.105000	0.721393	
mm_42255.1	chr5	114004695	114004895	+	1	NA	NA	NA	-13	NM_001286396	13142	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	0.040000	0.537313	
mm_3091.1	chr1	134415292	134415492	+	1	NA	NA	NA	14	NM_028320	72674	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.125000	0.721393	
mm_4114.1	chr1	167689110	167689310	+	1	NA	NA	NA	-348	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding	0.090000	0.686567	
mm_126000.1	chr15	76512294	76512494	+	1	NA	NA	NA	-576	NM_010046	13350	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	0.045000	0.482587	
mm_13216.1	chr2	96317936	96318136	+	1	NA	NA	NA	-133	NM_001289742	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.015000	0.502488	
mm_86292.1	chr9	122051115	122051315	-	1	NA	NA	NA	-55189	NM_153540	215494	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	0.020000	0.517413	
mm_43652.1	chr5	138341830	138342030	+	1	NA	NA	NA	61421	NM_016964	50878	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	0.000000	0.497512	-87(ACTTTAAGAGGG,+,0.00)
mm_135162.1	chr16	35866178	35866378	-	1	NA	NA	NA	5104	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.020000	0.398010	
mm_4159.1	chr1	171029209	171029409	+	1	NA	NA	NA	10383	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.015000	0.507463	
mm_162894.1	chr10	111753936	111754136	-	1	NA	NA	NA	120340	NR_046029	629206	Mm.391444	NR_046029		Gm20758	-	predicted gene, 20758	ncRNA	0.025000	0.437811	
mm_155518.1	chrX	74254727	74254927	+	1	NA	NA	NA	140	NM_007927	13726	Mm.18892	NM_007927	ENSMUSG00000001964	Emd	AW550900|Sta	emerin	protein-coding	0.110000	0.676617	
mm_134436.1	chr16	18213774	18213974	-	1	NA	NA	NA	-11	NR_015575	66779	Mm.387525	NR_015575		4933432I09Rik	-	RIKEN cDNA 4933432I09 gene	ncRNA	0.015000	0.611940	
mm_107980.1	chr12	72945605	72945805	+	1	NA	NA	NA	5823	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	0.140000	0.805970	
mm_90364.1	chr10	127166394	127166594	+	1	NA	NA	NA	663	NM_001244618	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.045000	0.537313	
mm_108535.1	chr12	84226565	84226765	+	1	NA	NA	NA	-7784	NM_001163501	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.005000	0.487562	
mm_56462.1	chr6	98927935	98928135	-	1	NA	NA	NA	100263	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.010000	0.358209	
mm_45383.1	chr5	66133628	66133828	-	1	NA	NA	NA	17250	NM_001291226	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.005000	0.398010	
mm_123558.1	chr14	66865794	66865994	-	1	NA	NA	NA	2706	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.020000	0.343284	
mm_163212.1	chr11	100397798	100397998	-	1	NA	NA	NA	-108	NM_010593	16480	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0.065000	0.661692	
mm_167929.1	chrX	104040443	104040643	+	1	NA	NA	NA	-59259	NM_011276	19820	Mm.427762	NM_011276	ENSMUSG00000056537	Rlim	AL022832|AW743871|Ha1r|Rlim1|Rnf12	ring finger protein, LIM domain interacting	protein-coding	0.000000	0.417910	61(CTTTATATACAC,+,0.00)
mm_34514.1	chr4	148896231	148896431	+	1	NA	NA	NA	91939	NM_027195	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.005000	0.537313	
mm_165360.1	chr2	122771206	122771406	+	1	NA	NA	NA	-407	NR_027888	59010	Mm.28986	NM_021507	ENSMUSG00000005803	Sqrdl	0610039J17Rik|4930557M22Rik|SQOR	sulfide quinone reductase-like (yeast)	protein-coding	0.010000	0.497512	
mm_118040.1	chr13	101692531	101692731	-	1	NA	NA	NA	-1	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.035000	0.532338	58(CACCTTAAATGG,-,0.00),60(CCTTAAATGGTG,+,0.00)
mm_141210.1	chr17	27133531	27133731	-	1	NA	NA	NA	260	NM_026063	67267	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	0.080000	0.631841	
mm_134469.1	chr16	18459964	18460164	-	1	NA	NA	NA	-33348	NM_001111062	12846	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.010000	0.527363	
mm_168531.1	chr1	161035403	161035603	+	1	NA	NA	NA	337	NR_002840	14455	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	0.045000	0.507463	
mm_64313.1	chr7	141864604	141864804	+	1	NA	NA	NA	25632	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.040000	0.557214	
mm_48903.1	chr6	3498319	3498519	+	1	NA	NA	NA	26	NM_001167750	73288	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	0.045000	0.527363	
mm_145144.1	chr18	45559750	45559950	+	1	NA	NA	NA	-304	NM_080465	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.120000	0.736318	
mm_69872.1	chr7	141475248	141475448	-	1	NA	NA	NA	112	NM_053082	64540	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.125000	0.721393	
mm_137896.1	chr17	31681408	31681608	+	1	NA	NA	NA	3577	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.015000	0.552239	
mm_93625.1	chr10	117277945	117278145	-	1	NA	NA	NA	4227	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.030000	0.497512	
mm_55874.1	chr6	83506792	83506992	-	1	NA	NA	NA	77	NM_013764	27369	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0.125000	0.666667	
mm_117130.1	chr13	60936357	60936557	-	1	NA	NA	NA	109	NM_001145799	13024	Mm.482089	NM_007796	ENSMUSG00000044258	Ctla2a	Ctla-2a	cytotoxic T lymphocyte-associated protein 2 alpha	protein-coding	0.005000	0.422886	
mm_165134.1	chr2	11172043	11172243	+	1	NA	NA	NA	-239	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.085000	0.646766	
mm_8343.1	chr1	150164966	150165166	-	1	NA	NA	NA	-118	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.045000	0.472637	-44(CCCTCTAAGAGG,-,0.00),-43(CCTCTAAGAGGG,+,0.00)
mm_74263.1	chr8	124898029	124898229	+	1	NA	NA	NA	243	NM_001111141	244666	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	0.150000	0.726368	
mm_156238.1	chrX	136139350	136139550	+	1	NA	NA	NA	405	NM_212457	406217	Mm.336245	NM_212457	ENSMUSG00000047844	Bex4	-	brain expressed X-linked 4	protein-coding	0.090000	0.696517	
mm_112043.1	chr12	111671387	111671587	-	1	NA	NA	NA	851	NM_021273	12709	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.070000	0.621891	
mm_164900.1	chr18	67065153	67065353	-	1	NA	NA	NA	-23045	NM_177137	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.005000	0.328358	33(TGCTCTTTAAGG,-,0.00)
mm_3535.1	chr1	150392771	150392971	+	1	NA	NA	NA	33	NM_133780	108989	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0.090000	0.661692	
mm_131665.1	chr16	20629878	20630078	+	1	NA	NA	NA	127	NM_139293	107522	Mm.263319	NM_025462	ENSMUSG00000022842	Ece2	1810009K13Rik|6330509A19Rik|9630025D12Rik|BB127715|Ece-2	endothelin converting enzyme 2	protein-coding	0.070000	0.686567	
mm_9693.1	chr1	178337205	178337405	-	1	NA	NA	NA	479	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.145000	0.741294	
mm_132827.1	chr16	45224883	45225083	+	1	NA	NA	NA	646	NM_177584	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.015000	0.427861	
mm_114067.1	chr13	54381680	54381880	+	1	NA	NA	NA	10431	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.025000	0.582090	
mm_165752.1	chr3	108257040	108257240	+	1	NA	NA	NA	214	NM_011967	26442	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	0.070000	0.567164	
mm_132498.1	chr16	36948526	36948726	+	1	NA	NA	NA	13643	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.030000	0.542289	
mm_58946.1	chr7	18565008	18565208	+	1	NA	NA	NA	2197	NM_001037168	545925	Mm.440302	NM_001037168	ENSMUSG00000070797	Psg27	EG545925|cea15	pregnancy-specific glycoprotein 27	protein-coding	0.005000	0.422886	
mm_124890.1	chr15	10313976	10314176	+	1	NA	NA	NA	20425	NM_001253782	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.010000	0.447761	
mm_97558.1	chr11	78931572	78931772	+	1	NA	NA	NA	6381	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.005000	0.507463	45(CTCCTTTAAAGA,-,0.00),46(TCCTTTAAAGAG,+,0.00),46(TCCTTTAAAGAG,-,0.00)
mm_140407.1	chr17	87646046	87646246	+	1	NA	NA	NA	10167	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.045000	0.542289	
mm_114302.1	chr13	59578958	59579158	+	1	NA	NA	NA	6165	NR_045633	319469	Mm.437992	NR_045633	ENSMUSG00000021557	A230056J06Rik	-	RIKEN cDNA A230056J06 gene	ncRNA	0.005000	0.482587	-33(GAGTATAAATGC,-,0.00)
mm_160701.1	chr10	43174588	43174788	+	1	NA	NA	NA	-11	NR_102361	74530	Mm.415375	NM_172419	ENSMUSG00000045008	9030612E09Rik	-	RIKEN cDNA 9030612E09 gene	ncRNA	0.120000	0.786070	
mm_132803.1	chr16	45158668	45158868	+	1	NA	NA	NA	-61	NM_026402	67841	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	0.080000	0.681592	
mm_74145.1	chr8	123280840	123281040	+	1	NA	NA	NA	-26718	NM_028200	72325	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	0.020000	0.522388	
mm_105791.1	chr11	109986922	109987122	-	1	NA	NA	NA	8794	NM_013851	27404	Mm.341004	NM_013851	ENSMUSG00000020620	Abca8b	Abca8	ATP-binding cassette, sub-family A (ABC1), member 8b	protein-coding	0.010000	0.517413	
mm_45605.1	chr5	75044512	75044712	-	1	NA	NA	NA	29	NM_028850	74277	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	0.200000	0.820896	
mm_5709.1	chr1	43811803	43812003	-	1	NA	NA	NA	15805	NM_026430	67883	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.000000	0.422886	-36(GTGCATATAAGA,-,0.00)
mm_117251.1	chr13	64366075	64366275	-	1	NA	NA	NA	4345	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.005000	0.452736	
mm_35385.1	chr4	33248386	33248586	-	1	NA	NA	NA	301	NM_001033225	108767	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.120000	0.726368	
mm_29709.1	chr3	123508822	123509022	-	1	NA	NA	NA	-586	NR_028574	69895	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	0.055000	0.562189	
mm_169294.1	chr1	40324446	40324646	+	1	NA	NA	NA	-81	NM_133193	107527	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0.020000	0.507463	
mm_164937.1	chr18	86121588	86121788	+	1	NA	NA	NA	-273264	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.005000	0.402985	
mm_86105.1	chr9	115310304	115310504	-	1	NA	NA	NA	17	NM_024222	68292	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0.120000	0.736318	
mm_46618.1	chr5	108132456	108132656	-	1	NA	NA	NA	35	NM_001347383	73130	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik	transmembrane p24 trafficking protein 5	protein-coding	0.065000	0.611940	
mm_89420.1	chr10	90877223	90877423	+	1	NA	NA	NA	47480	NM_001347053	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.000000	0.278607	
mm_107128.1	chr12	21111648	21111848	+	1	NA	NA	NA	-8	NM_001004364	211914	Mm.358946	NM_001004364	ENSMUSG00000052632	Asap2	6530401G17Rik|Ddef2|Gm1523|Gm592|PAG3|PAP	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding	0.155000	0.800995	
mm_97278.1	chr11	75999920	76000120	+	1	NA	NA	NA	108	NM_198637	74230	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding	0.115000	0.701493	
mm_74861.1	chr8	24823931	24824131	-	1	NA	NA	NA	338	NM_001272058	11499	Mm.143889	NM_007401	ENSMUSG00000031554	Adam5	tMDC II|tMDCII	a disintegrin and metallopeptidase domain 5	protein-coding	0.030000	0.577114	63(GCATCTTAAAGG,-,0.00)
mm_88696.1	chr10	80142244	80142444	+	1	NA	NA	NA	29	NM_025313	66043	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0.095000	0.641791	
mm_18042.1	chr2	39005461	39005661	-	1	NA	NA	NA	-430	NM_025592	66489	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0.050000	0.492537	75(ACTTTTAAAGAA,+,0.00)
mm_122247.1	chr14	33646242	33646442	-	1	NA	NA	NA	57072	NM_008978	19256	Mm.8019	NM_008978	ENSMUSG00000021940	Ptpn20	typ	protein tyrosine phosphatase, non-receptor type 20	protein-coding	0.000000	0.472637	
mm_135496.1	chr16	46183505	46183705	-	1	NA	NA	NA	-28528	NM_001304528	11615	Mm.330692	NM_001304528	ENSMUSG00000048087	Gm4737	AL024110|EG11615|ENSMUSG00000048087	predicted gene 4737	protein-coding	0.000000	0.507463	
mm_6513.1	chr1	74393964	74394164	-	1	NA	NA	NA	-246	NR_029743	387219		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.020000	0.567164	
mm_42515.1	chr5	115544137	115544337	+	1	NA	NA	NA	-15230	NM_007475	11837	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.015000	0.606965	
mm_138864.1	chr17	43016429	43016629	+	1	NA	NA	NA	-26	NM_178589	94185	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0.080000	0.656716	
mm_170849.1	chr2	177759138	177759338	+	1	NA	NA	NA	-50	NM_001243903	626802	Mm.386029	NM_001243903	ENSMUSG00000078864	Gm14322	OTTMUSG00000016321	predicted gene 14322	protein-coding	0.010000	0.497512	
mm_69349.1	chr7	130244483	130244683	-	1	NA	NA	NA	22225	NM_010207	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	0.020000	0.532338	
mm_119855.1	chr14	54442230	54442430	+	1	NA	NA	NA	10732	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.015000	0.447761	
mm_13848.1	chr2	119594210	119594410	+	1	NA	NA	NA	14	NR_015473	66602	Mm.379181	NR_015473	ENSMUSG00000085438	1700020I14Rik	1190006L01Rik|4933437I03Rik|AI451541|AI585852|AW538376|AW558897|Cyrano	RIKEN cDNA 1700020I14 gene	ncRNA	0.100000	0.681592	
mm_127768.1	chr15	3275637	3275837	-	1	NA	NA	NA	4760	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.010000	0.427861	57(TGCTTTTTAAGA,-,0.00)
mm_19869.1	chr2	114047358	114047558	-	1	NA	NA	NA	5417	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.010000	0.492537	
mm_139499.1	chr17	56265729	56265929	+	1	NA	NA	NA	9036	NM_010192	14154	Mm.290813	NM_010192	ENSMUSG00000043683	Fem1a	AW611390|Fem1aa	feminization 1 homolog a (C. elegans)	protein-coding	0.015000	0.467662	
mm_86552.1	chr10	10342999	10343199	+	1	NA	NA	NA	129215	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.015000	0.427861	
mm_39759.1	chr5	29736356	29736556	+	1	NA	NA	NA	-520	NR_028426	332993	Mm.473746	NR_028426		Gm5129	EG332993|ENSMUSG00000053121	predicted gene 5129	ncRNA	0.065000	0.641791	
mm_58623.1	chr7	5069096	5069296	+	1	NA	NA	NA	7053	NM_001205231	22185	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.000000	0.452736	
mm_38326.1	chr4	137357586	137357786	-	1	NA	NA	NA	73	NM_009861	12540	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.105000	0.721393	
mm_119167.1	chr14	32085636	32085836	+	1	NA	NA	NA	8	NM_145460	218885	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	0.095000	0.621891	
mm_112592.1	chr13	13954553	13954753	+	1	NA	NA	NA	-21	NM_178640	97884	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0.120000	0.706468	
mm_132911.1	chr16	48873226	48873426	+	1	NA	NA	NA	718	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.005000	0.437811	23(CCCTTTAGACCT,+,0.00)
mm_141473.1	chr17	30874934	30875134	-	1	NA	NA	NA	-26833	NM_021332	14652	Mm.390969	NM_021332	ENSMUSG00000024027	Glp1r	GLP-1R|GLP1Rc	glucagon-like peptide 1 receptor	protein-coding	0.050000	0.547264	
mm_22161.1	chr2	172940224	172940424	-	1	NA	NA	NA	-3	NM_007557	12162	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	0.080000	0.686567	
mm_61399.1	chr7	73375491	73375691	+	1	NA	NA	NA	71	NM_177740	244058	Mm.333943	NM_177740	ENSMUSG00000070509	Rgma	BC059072|C230063O06	repulsive guidance molecule family member A	protein-coding	0.140000	0.756219	
mm_161270.1	chr14	7314951	7315151	-	1	NA	NA	NA	17344	NM_001025085	545013	Mm.422841	NM_001025085	ENSMUSG00000072726	Gm5797	EG545013	predicted gene 5797	protein-coding	0.110000	0.746269	
mm_78869.1	chr9	44407074	44407274	+	1	NA	NA	NA	374	NM_021789	60409	Mm.29814	NM_021789	ENSMUSG00000032112	Trappc4	1500017G03Rik|AI303617|HSPC172|PTD009|Sbd|Sbdn|Sdcbp2|TRS23	trafficking protein particle complex 4	protein-coding	0.105000	0.666667	
mm_103173.1	chr11	70459707	70459907	-	1	NA	NA	NA	177	NM_023158	66102	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.050000	0.542289	
mm_164449.1	chr16	49913446	49913646	+	1	NA	NA	NA	57892	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.025000	0.472637	
mm_42423.1	chr5	115327179	115327379	+	1	NA	NA	NA	102	NR_036616	108014	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0.185000	0.815920	
mm_64530.1	chr7	144130366	144130566	+	1	NA	NA	NA	-45054	NM_001113373	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.010000	0.412935	
mm_27629.1	chr3	60963419	60963619	-	1	NA	NA	NA	-39266	NM_008772	18441	Mm.281452	NM_008772	ENSMUSG00000027765	P2ry1	P2Y1	purinergic receptor P2Y, G-protein coupled 1	protein-coding	0.005000	0.398010	
mm_147352.1	chr18	43354692	43354892	-	1	NA	NA	NA	18480	NM_001136086	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.005000	0.398010	
mm_22346.1	chr2	180893315	180893515	-	1	NA	NA	NA	-625	NR_029538	723951		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA	0.140000	0.731343	
mm_14839.1	chr2	147373851	147374051	+	1	NA	NA	NA	8957	NM_008780	18503	Mm.315502	NM_008780	ENSMUSG00000037034	Pax1	Pax-1|hbs|hunchback|un|undulated|wt	paired box 1	protein-coding	0.045000	0.547264	
mm_50203.1	chr6	42245799	42245999	+	1	NA	NA	NA	-36	NM_029555	76263	Mm.267014	NM_029555	ENSMUSG00000029864	Gstk1	0610025I19Rik|AW260476|DsbA-L	glutathione S-transferase kappa 1	protein-coding	0.055000	0.597015	-32(CCCTATAGGGCG,+,0.00)
mm_147972.1	chr18	67248717	67248917	-	1	NA	NA	NA	-2987	NM_172630	225651	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	A530095G11	metallophosphoesterase 1	protein-coding	0.015000	0.477612	
mm_68476.1	chr7	110862830	110863030	-	1	NA	NA	NA	23	NM_053247	114332	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	0.015000	0.512438	
mm_87131.1	chr10	34283403	34283603	+	1	NA	NA	NA	1313	NM_009433	22110	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.020000	0.467662	
mm_76847.1	chr8	105322249	105322449	-	1	NA	NA	NA	3927	NM_177449	234684	Mm.381717	NM_177449	ENSMUSG00000041679	Lrrc29	A630024J02Rik|FBL9|FBXL9	leucine rich repeat containing 29	protein-coding	0.000000	0.248756	67(CCTTTTATATAT,+,0.00)
mm_60982.1	chr7	48984251	48984451	+	1	NA	NA	NA	25278	NM_001111016	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.000000	0.353234	
mm_127180.1	chr15	98983618	98983818	+	1	NA	NA	NA	-2247	NR_045991	75951	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.035000	0.512438	
mm_51436.1	chr6	80018825	80019025	+	1	NA	NA	NA	48	NM_001134743	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.010000	0.502488	
mm_153973.1	chr19	47863314	47863514	-	1	NA	NA	NA	-2131	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.005000	0.378109	
mm_156870.1	chrX	164506146	164506346	+	1	NA	NA	NA	8343	NM_027027	69299	Mm.79031	NM_027027	ENSMUSG00000031384	Asb9	1700011M07Rik	ankyrin repeat and SOCS box-containing 9	protein-coding	0.000000	0.532338	-82(GTGTAGAAAAGG,-,0.00)
mm_5874.1	chr1	53791349	53791549	-	1	NA	NA	NA	-6234	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.000000	0.487562	
mm_47098.1	chr5	118155324	118155524	-	1	NA	NA	NA	34	NM_172721	231672	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	0.095000	0.676617	
mm_89360.1	chr10	88379158	88379358	+	1	NA	NA	NA	-154	NM_001004164	432486	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.165000	0.810945	
mm_28904.1	chr3	98352080	98352280	-	1	NA	NA	NA	-12211	NM_016966	236539	Mm.16898	NM_016966	ENSMUSG00000053398	Phgdh	3-PGDH|3PGDH|4930479N23|A10|PGAD|PGD|PGDH|SERA	3-phosphoglycerate dehydrogenase	protein-coding	0.025000	0.487562	
mm_104183.1	chr11	87797258	87797458	-	1	NA	NA	NA	3574	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.050000	0.552239	
mm_1028.1	chr1	58754888	58755088	+	1	NA	NA	NA	24436	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.010000	0.432836	-95(GTATTTATAGTG,+,0.00),28(GCTTTTATGGAG,+,0.00)
mm_110224.1	chr12	28635798	28635998	-	1	NA	NA	NA	55	NM_011300	20115	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	0.090000	0.587065	
mm_53198.1	chr6	125552836	125553036	+	1	NA	NA	NA	-12	NM_011708	22371	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.010000	0.562189	-69(GCTTTTCAAGCC,+,0.00)
mm_162497.1	chr1	138175522	138175722	-	1	NA	NA	NA	-317	NM_001268286	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.015000	0.417910	
mm_74353.1	chr8	128166291	128166491	+	1	NA	NA	NA	111834	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.010000	0.402985	
mm_149360.1	chr19	11121261	11121461	+	1	NA	NA	NA	9517	NM_027058	69369	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0.140000	0.726368	
mm_127621.1	chr15	102461253	102461453	+	1	NA	NA	NA	2183	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.015000	0.512438	
mm_154670.1	chrX	7882107	7882307	+	1	NA	NA	NA	-2037	NM_001083937	22232	Mm.214976	NM_078484	ENSMUSG00000031156	Slc35a2	AI327289|Had-1|Had1|Sfc8|UGT|Ugalt	solute carrier family 35 (UDP-galactose transporter), member A2	protein-coding	0.025000	0.592040	
mm_129552.1	chr15	79441937	79442137	-	1	NA	NA	NA	20	NM_001289898	27373	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.200000	0.855721	
mm_26625.1	chr3	152763294	152763494	+	1	NA	NA	NA	49294	NM_025662	329777	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0.045000	0.527363	
mm_55970.1	chr6	85831742	85831942	-	1	NA	NA	NA	48	NM_023455	68396	Mm.154782	NM_023455	ENSMUSG00000030004	Nat8	0610037O16Rik|CCNAT|Cml4	N-acetyltransferase 8 (GCN5-related)	protein-coding	0.010000	0.542289	
mm_31096.1	chr4	41755475	41755675	+	1	NA	NA	NA	347	NM_016658	14430	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	0.085000	0.641791	
mm_19087.1	chr2	79254605	79254805	-	1	NA	NA	NA	-721	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.000000	0.487562	52(GCTTCTAAAAAG,-,0.00)
mm_140577.1	chr17	10079733	10079933	-	1	NA	NA	NA	239528	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.025000	0.587065	
mm_67738.1	chr7	90265272	90265472	-	1	NA	NA	NA	60	NM_029256	75338	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.040000	0.547264	
mm_112733.1	chr13	19214182	19214382	+	1	NA	NA	NA	181531	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.432836	
mm_51223.1	chr6	71371314	71371514	+	1	NA	NA	NA	-2013	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.015000	0.492537	-85(CACTTTATATGC,-,0.00)
mm_11489.1	chr2	32450990	32451190	+	1	NA	NA	NA	380	NM_001164357	227731	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.125000	0.706468	
mm_12302.1	chr2	69109431	69109631	+	1	NA	NA	NA	-26269	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.010000	0.402985	
mm_23521.1	chr3	60614328	60614528	+	1	NA	NA	NA	113249	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.348259	
mm_160721.1	chr10	67537930	67538130	+	1	NA	NA	NA	100	NM_001347458	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.010000	0.422886	
mm_57291.1	chr6	124433428	124433628	-	1	NA	NA	NA	-18461	NM_001277805	19305	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1R|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0.020000	0.482587	
mm_148890.1	chr19	6877700	6877900	+	1	NA	NA	NA	-19589	NM_001081291	78317	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.005000	0.452736	
mm_151680.1	chr19	4257534	4257734	-	1	NA	NA	NA	6244	NR_105951	102465595		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	0.045000	0.492537	
mm_130192.1	chr15	94404255	94404455	-	1	NA	NA	NA	-5	NM_001164786	223838	Mm.214132	NM_177431	ENSMUSG00000022449	Adamts20	Adamst20|bt	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	protein-coding	0.165000	0.810945	
mm_158822.1	chrX	167382654	167382854	-	1	NA	NA	NA	-5	NM_001313758	110639	Mm.272955	NM_026662	ENSMUSG00000025742	Prps2	2610101M19Rik|AA589463|AI464149|Prps-2	phosphoribosyl pyrophosphate synthetase 2	protein-coding	0.040000	0.661692	
mm_139891.1	chr17	70850072	70850272	+	1	NA	NA	NA	-382	NM_001164076	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.030000	0.407960	
mm_97588.1	chr11	78945774	78945974	+	1	NA	NA	NA	20583	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.010000	0.547264	
mm_55281.1	chr6	54409230	54409430	-	1	NA	NA	NA	20891	NR_033635	100042056	Mm.448157	NM_198118	ENSMUSG00000073067	9130019P16Rik	6430501H15Rik|OTTMUSG00000023151	RIKEN cDNA 9130019P16 gene	ncRNA	0.015000	0.597015	
mm_133734.1	chr16	93864349	93864549	+	1	NA	NA	NA	-19452	NM_028083	110749	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	0.025000	0.497512	
mm_143781.1	chr17	81730814	81731014	-	1	NA	NA	NA	7473	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.010000	0.457711	
mm_106023.1	chr11	116027296	116027496	-	1	NA	NA	NA	-2892	NM_008211	15081	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0.000000	0.467662	
mm_124059.1	chr14	78088885	78089085	-	1	NA	NA	NA	22	NM_177629	219170	Mm.320428	NM_177629	ENSMUSG00000045655	Fam216b	9330158N17|AU021034	family with sequence similarity 216, member B	protein-coding	0.020000	0.412935	32(GCTTTTAGAACA,+,0.00)
mm_166156.1	chr5	15506965	15507165	-	1	NA	NA	NA	22157	NM_001310449	100861755	Mm.382859	NM_001310449	ENSMUSG00000106445	Gm21190	-	predicted gene, 21190	protein-coding	0.025000	0.462687	
mm_156017.1	chrX	107089572	107089772	+	1	NA	NA	NA	337	NM_172435	78826	Mm.74639	NM_172435	ENSMUSG00000050921	P2ry10	5830408N17Rik|Lypsr2|P2Y10	purinergic receptor P2Y, G-protein coupled 10	protein-coding	0.000000	0.393035	
mm_108794.1	chr12	91400931	91401131	+	1	NA	NA	NA	38	NM_011648	22095	Mm.173847	NM_011648	ENSMUSG00000020963	Tshr	AI481368|hypothroid|hyt|pet	thyroid stimulating hormone receptor	protein-coding	0.055000	0.641791	
mm_109895.1	chr12	7555266	7555466	-	1	NA	NA	NA	-175036	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA	0.000000	0.368159	
mm_8260.1	chr1	139214704	139214904	-	1	NA	NA	NA	162272	NM_133239	170788	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	0.005000	0.447761	
mm_165688.1	chr3	92621052	92621252	-	1	NA	NA	NA	508	NM_001166172	78382	Mm.235474	NM_001166172	ENSMUSG00000086848	Lce6a	2210420J11Rik	late cornified envelope 6A	protein-coding	0.005000	0.437811	
mm_126455.1	chr15	80930422	80930622	+	1	NA	NA	NA	-9517	NR_039573	100628612		NR_039573	ENSMUSG00000092868	Mir5113	mir-5113|mmu-mir-5113|mu-mir-5113	microRNA 5113	ncRNA	0.020000	0.616915	
mm_161364.1	chr14	58074981	58075181	+	1	NA	NA	NA	2395	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.120000	0.721393	
mm_77498.1	chr8	122611285	122611485	-	1	NA	NA	NA	102	NM_001193645	50917	Mm.1786	NM_016722	ENSMUSG00000015027	Galns	mFLJ00319	galactosamine (N-acetyl)-6-sulfate sulfatase	protein-coding	0.040000	0.636816	
mm_167758.1	chr9	110422432	110422632	-	1	NA	NA	NA	2724	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.000000	0.517413	
mm_147176.1	chr18	36744397	36744597	-	1	NA	NA	NA	90	NM_010885	17991	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	0.090000	0.626866	
mm_139660.1	chr17	57405181	57405381	+	1	NA	NA	NA	46595	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.522388	
mm_1032.1	chr1	58755232	58755432	+	1	NA	NA	NA	24780	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.015000	0.398010	
mm_90124.1	chr10	117530942	117531142	+	1	NA	NA	NA	-98458	NM_027468	70574	Mm.339332	NM_027468	ENSMUSG00000020183	Cpm	1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik	carboxypeptidase M	protein-coding	0.010000	0.373134	
mm_146299.1	chr18	80206728	80206928	+	1	NA	NA	NA	-18	NM_178604	27366	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|ENSMUSG00000057130|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	0.135000	0.716418	
mm_17051.1	chr2	20968893	20969093	-	1	NA	NA	NA	119	NR_033225	433408	Mm.386941	NR_033225		Gm13375	OTTMUSG00000011664	predicted gene 13375	ncRNA	0.135000	0.761194	
mm_157232.1	chrX	16817292	16817492	-	1	NA	NA	NA	-26	NM_172778	109731	Mm.241656	NM_172778	ENSMUSG00000040147	Maob	6330414K01Rik|MAO-B	monoamine oxidase B	protein-coding	0.080000	0.691542	
mm_107752.1	chr12	59066871	59067071	+	1	NA	NA	NA	52	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.100000	0.666667	
mm_159313.1	chr3	7613308	7613508	-	1	NA	NA	NA	352	NM_008371	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.045000	0.572139	
mm_141025.1	chr17	25184336	25184536	-	1	NA	NA	NA	-125	NM_183150	214489	Mm.274433	NM_183150	ENSMUSG00000067722	BC003965	Ccsmst1	cDNA sequence BC003965	protein-coding	0.090000	0.542289	
mm_135005.1	chr16	32243754	32243954	-	1	NA	NA	NA	3171	NM_173439	268882	Mm.256137	NM_173439	ENSMUSG00000035764	Fbxo45	2610017J04Rik|AI463119|BC026799	F-box protein 45	protein-coding	0.000000	0.348259	
mm_113844.1	chr13	47193966	47194166	+	1	NA	NA	NA	63	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.045000	0.626866	
mm_57032.1	chr6	122325405	122325605	-	1	NA	NA	NA	14152	NM_001042623	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.010000	0.502488	
mm_78094.1	chr9	18478249	18478449	+	1	NA	NA	NA	-46	NM_028557	73503	Mm.160088	NM_028557	ENSMUSG00000038691	Mbd3l1	1700070G05Rik|1700095H13Rik|Mbd3l	methyl-CpG binding domain protein 3-like 1	protein-coding	0.015000	0.402985	
mm_131479.1	chr16	17144511	17144711	+	1	NA	NA	NA	-188	NM_029779	76872	Mm.101656	NM_029779	ENSMUSG00000022768	Ccdc116	4930432J16Rik	coiled-coil domain containing 116	protein-coding	0.025000	0.502488	
mm_127026.1	chr15	96287175	96287375	+	1	NA	NA	NA	-247	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.175000	0.850746	
mm_82214.1	chr9	3002275	3002475	-	1	NA	NA	NA	36368	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.005000	0.348259	
mm_169029.1	chr13	119188668	119188868	+	1	NA	NA	NA	220243	NM_008710	18115	Mm.132584	NM_008710	ENSMUSG00000025453	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.055000	0.611940	
mm_78615.1	chr9	37545843	37546043	+	1	NA	NA	NA	6688	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.065000	0.691542	
mm_165614.1	chr3	55740507	55740707	+	1	NA	NA	NA	-41903	NM_010750	17116	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.005000	0.452736	
mm_18815.1	chr2	74576501	74576701	-	1	NA	NA	NA	2347	NM_001110209	69605	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	0.000000	0.393035	
mm_38578.1	chr4	141817887	141818087	-	1	NA	NA	NA	8018	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.030000	0.582090	
mm_105249.1	chr11	102350090	102350290	-	1	NA	NA	NA	15091	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.020000	0.567164	
mm_25373.1	chr3	107211197	107211397	+	1	NA	NA	NA	10435	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.512438	
mm_156472.1	chrX	143664244	143664444	+	1	NA	NA	NA	-1401	NM_001195049	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding	0.030000	0.562189	
mm_151470.1	chr19	58671654	58671854	+	1	NA	NA	NA	1389	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.020000	0.482587	
mm_168732.1	chr12	114141079	114141279	-	1	NA	NA	NA	328287	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.000000	0.467662	
mm_75796.1	chr8	70110115	70110315	-	1	NA	NA	NA	-7629	NR_106033	102465646		NR_106033	ENSMUSG00000099042	Mir7066	Gm27290|mmu-mir-7066	microRNA 7066	ncRNA	0.035000	0.597015	66(CCGCTTTAAAGG,-,0.00),67(CGCTTTAAAGGG,-,0.00),68(GCTTTAAAGGGT,+,0.00)
mm_26758.1	chr3	8666871	8667071	-	1	NA	NA	NA	67	NM_010423	15213	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.090000	0.666667	
mm_89303.1	chr10	87914303	87914503	+	1	NA	NA	NA	-52268	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.363184	
mm_93943.1	chr10	127195626	127195826	-	1	NA	NA	NA	-17	NM_030714	80904	Mm.271724	NM_030714	ENSMUSG00000040415	Dtx3	Deltex3|mg310	deltex 3, E3 ubiquitin ligase	protein-coding	0.070000	0.706468	
mm_26550.1	chr3	146404585	146404785	+	1	NA	NA	NA	43	NM_138744	99167	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	0.175000	0.810945	
mm_16840.1	chr2	11501941	11502141	-	1	NA	NA	NA	49	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.080000	0.631841	-33(GATCTTAAAAGG,-,0.00),-31(TCTTAAAAGGCC,+,0.00)
mm_57193.1	chr6	122849947	122850147	-	1	NA	NA	NA	6110	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.005000	0.482587	
mm_165126.1	chr2	5394073	5394273	+	1	NA	NA	NA	14783	NR_030601	100124465		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.015000	0.497512	
mm_13360.1	chr2	103424701	103424901	+	1	NA	NA	NA	733	NM_010125	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.020000	0.482587	
mm_70513.1	chr8	12940837	12941037	+	1	NA	NA	NA	-7004	NR_128567	104797311		NR_128567	ENSMUSG00000105030	Gm38671	Mir9768|mmu-mir-9768	predicted gene, 38671	ncRNA	0.015000	0.601990	
mm_19876.1	chr2	114049122	114049322	-	1	NA	NA	NA	3653	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.035000	0.522388	
mm_111651.1	chr12	102757655	102757855	-	1	NA	NA	NA	55	NM_001142939	100859931	Mm.291222	NM_001142939	ENSMUSG00000041716	Gm20604	AK010878-Moap1	predicted gene 20604	protein-coding	0.120000	0.686567	
mm_10749.1	chr2	23156418	23156618	+	1	NA	NA	NA	13	NM_013771	27377	Mm.23335	NM_013771	ENSMUSG00000026775	Yme1l1	FtsH1|Ftsh	YME1-like 1 (S. cerevisiae)	protein-coding	0.070000	0.567164	
mm_129352.1	chr15	77915630	77915830	-	1	NA	NA	NA	13264	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.020000	0.552239	
mm_47059.1	chr5	116382605	116382805	-	1	NA	NA	NA	40159	NM_030704	80888	Mm.21549	NM_030704	ENSMUSG00000041548	Hspb8	AU018630|AW413033|Cryac|D5Ucla4|E2IG1|H11|H11K|HSP20-like|HSP22	heat shock protein 8	protein-coding	0.025000	0.462687	-35(CTCTATAAAAGG,-,0.00)
mm_96829.1	chr11	69999223	69999423	+	1	NA	NA	NA	-1303	NM_007888	13543	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0.050000	0.532338	
mm_11185.1	chr2	29060163	29060363	+	1	NA	NA	NA	0	NM_009442	22130	Mm.252195	NM_009442	ENSMUSG00000026803	Ttf1	AV245725|TTF-1|TTF-I	transcription termination factor, RNA polymerase I	protein-coding	0.080000	0.572139	
mm_133053.1	chr16	57572218	57572418	+	1	NA	NA	NA	23076	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.005000	0.462687	
mm_78169.1	chr9	21032001	21032201	+	1	NA	NA	NA	63	NM_008319	15898	Mm.4629	NM_008319	ENSMUSG00000032174	Icam5	CD50|ICAM-3|Icam3|TLN|Tlcn	intercellular adhesion molecule 5, telencephalin	protein-coding	0.090000	0.731343	
mm_144358.1	chr18	17773273	17773473	+	1	NA	NA	NA	-192383	NR_045374	75162	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.005000	0.348259	
mm_4447.1	chr1	172579207	172579407	+	1	NA	NA	NA	11261	NM_029084	74748	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	0.020000	0.442786	
mm_1215.1	chr1	62726947	62727147	+	1	NA	NA	NA	23730	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.010000	0.427861	
mm_128112.1	chr15	28025859	28026059	-	1	NA	NA	NA	-111	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.080000	0.671642	
mm_75685.1	chr8	68121529	68121729	-	1	NA	NA	NA	-147055	NM_177698	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.005000	0.552239	
mm_148662.1	chr19	5568330	5568530	+	1	NA	NA	NA	356	NM_001033448	381201	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0.060000	0.651741	
mm_143355.1	chr17	67143524	67143724	-	1	NA	NA	NA	-117389	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.000000	0.412935	
mm_141766.1	chr17	34282821	34283021	-	1	NA	NA	NA	4850	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.000000	0.482587	
mm_92195.1	chr10	68135176	68135376	-	1	NA	NA	NA	143450	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.010000	0.437811	5(TCTTTAAGAGCA,+,0.00)
mm_133402.1	chr16	84834849	84835049	+	1	NA	NA	NA	49	NM_001302216	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.090000	0.631841	
mm_6903.1	chr1	84814788	84814988	-	1	NA	NA	NA	24416	NM_133975	14897	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.025000	0.462687	-70(GTCTAGAAAGGG,-,0.00)
mm_70873.1	chr8	25068499	25068699	+	1	NA	NA	NA	-29637	NM_001081187	330723	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0.010000	0.437811	
mm_67633.1	chr7	84372329	84372529	-	1	NA	NA	NA	37609	NM_007488	11864	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding	0.015000	0.442786	
mm_18847.1	chr2	75633487	75633687	-	1	NA	NA	NA	-25672	NM_146130	229279	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.025000	0.517413	
mm_138666.1	chr17	35874886	35875086	+	1	NA	NA	NA	-4792	NM_026987	69192	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	0.010000	0.527363	
mm_13976.1	chr2	121437826	121438026	+	1	NA	NA	NA	4675	NM_145973	269344	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	0.005000	0.393035	48(CCCTTTATACTG,+,0.00)
mm_140602.1	chr17	10319252	10319452	-	1	NA	NA	NA	9	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.195000	0.810945	
mm_168534.1	chr1	161035852	161036052	+	1	NA	NA	NA	786	NR_002840	14455	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	0.010000	0.427861	
mm_64671.1	chr7	4461161	4461361	-	1	NA	NA	NA	-3474	NM_026146	67425	Mm.360392	NM_026146	ENSMUSG00000006154	Eps8l1	2310051G19Rik|4632407K17Rik|AW060268|DRC3|EPS8R1	EPS8-like 1	protein-coding	0.005000	0.547264	
mm_67817.1	chr7	98164895	98165095	-	1	NA	NA	NA	-2653	NM_001301250	12337	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0.015000	0.472637	-77(TCCTTTAGAGCC,+,0.00)
mm_125123.1	chr15	30172655	30172855	+	1	NA	NA	NA	162	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.205000	0.845771	
mm_36131.1	chr4	59315704	59315904	-	1	NA	NA	NA	55753	NR_105031	101055769	Mm.421401	NR_105031		Gm12596	OTTMUSG00000007649	predicted gene 12596	ncRNA	0.030000	0.557214	
mm_44006.1	chr5	146948669	146948869	+	1	NA	NA	NA	112	NM_025652	66596	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0.165000	0.746269	
mm_33283.1	chr4	128747034	128747234	+	1	NA	NA	NA	-12124	NM_001009819	215493	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	0.035000	0.582090	
mm_148520.1	chr19	4300520	4300720	+	1	NA	NA	NA	5602	NM_130863	110355	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.010000	0.562189	
mm_97525.1	chr11	78501731	78501931	+	1	NA	NA	NA	-1682	NM_008759	18292	Mm.134360	NM_008759	ENSMUSG00000001103	Sebox	OG9|Og9x	SEBOX homeobox	protein-coding	0.060000	0.542289	
mm_82453.1	chr9	15619511	15619711	-	1	NA	NA	NA	-246	NR_040746	78025	Mm.55983	NR_040746	ENSMUSG00000111299	4930540M03Rik	-	RIKEN cDNA 4930540M03 gene	ncRNA	0.005000	0.487562	
mm_111742.1	chr12	103896980	103897180	-	1	NA	NA	NA	7870	NM_009245	20702	Mm.439692	NM_009245	ENSMUSG00000079015	Serpina1c	Pi3|Pi6|Skalp|Spi1-3|Spi1-6|Wap3	serine (or cysteine) peptidase inhibitor, clade A, member 1C	protein-coding	0.005000	0.542289	
mm_49975.1	chr6	40891102	40891302	+	1	NA	NA	NA	-3708	NM_139296	194357	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0.005000	0.477612	
mm_84584.1	chr9	69760772	69760972	-	1	NA	NA	NA	68	NM_022378	64290	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	0.055000	0.562189	
mm_41944.1	chr5	105731738	105731938	+	1	NA	NA	NA	31028	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.025000	0.537313	
mm_11611.1	chr2	34406867	34407067	+	1	NA	NA	NA	116	NM_001290626	227743	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	0.125000	0.766169	
mm_85930.1	chr9	112092542	112092742	-	1	NA	NA	NA	26069	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.000000	0.388060	3(GCTTATAAAACC,+,0.00)
mm_171502.1	chr4	146270209	146270409	+	1	NA	NA	NA	-76	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.040000	0.502488	
mm_106437.1	chr11	119541355	119541555	-	1	NA	NA	NA	6365	NM_008730	18164	Mm.5142	NM_008730	ENSMUSG00000025582	Nptx1	D11Bwg1004e|Np1	neuronal pentraxin 1	protein-coding	0.045000	0.636816	
mm_143629.1	chr17	78895045	78895245	-	1	NA	NA	NA	11847	NM_001163625	73671	Mm.45514	NM_001163625	ENSMUSG00000038045	Sult6b1	2410078J06Rik|AV101767|ST6B1	sulfotransferase family, cytosolic, 6B, member 1	protein-coding	0.015000	0.542289	
mm_40882.1	chr5	74535566	74535766	+	1	NA	NA	NA	184	NM_001159574	66899	Mm.272468	NM_024183	ENSMUSG00000029227	Fip1l1	1300019H17Rik|Rje	FIP1 like 1 (S. cerevisiae)	protein-coding	0.105000	0.666667	
mm_126257.1	chr15	79081772	79081972	+	1	NA	NA	NA	6649	NM_145139	223691	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	0.025000	0.557214	
mm_17480.1	chr2	28561171	28561371	-	1	NA	NA	NA	2132	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.020000	0.577114	
mm_150234.1	chr19	34008190	34008390	+	1	NA	NA	NA	36	NM_001205349	240633	Mm.58924	NM_172837	ENSMUSG00000024771	Lipk	9930115F20|BC055815|Lipl2	lipase, family member K	protein-coding	0.025000	0.457711	
mm_89988.1	chr10	111996680	111996880	+	1	NA	NA	NA	484	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.020000	0.457711	
mm_47644.1	chr5	125389093	125389293	-	1	NA	NA	NA	824	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.060000	0.597015	
mm_53931.1	chr6	4746924	4747124	-	1	NA	NA	NA	180	NM_001130188	20392	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	0.055000	0.611940	
mm_9999.1	chr1	191445711	191445911	-	1	NA	NA	NA	-48770	NM_144880	226849	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0.015000	0.502488	
mm_132870.1	chr16	48611698	48611898	+	1	NA	NA	NA	160158	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.005000	0.462687	
mm_47062.1	chr5	116408753	116408953	-	1	NA	NA	NA	14011	NM_030704	80888	Mm.21549	NM_030704	ENSMUSG00000041548	Hspb8	AU018630|AW413033|Cryac|D5Ucla4|E2IG1|H11|H11K|HSP20-like|HSP22	heat shock protein 8	protein-coding	0.005000	0.482587	
mm_17198.1	chr2	25468762	25468962	-	1	NA	NA	NA	887	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.010000	0.547264	
mm_73869.1	chr8	118799290	118799490	+	1	NA	NA	NA	515779	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.010000	0.462687	-76(GATTTTAAAAAG,-,0.00)
mm_140148.1	chr17	80095397	80095597	+	1	NA	NA	NA	-31974	NM_176963	319625	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.005000	0.572139	-35(CACTATAAAAGG,-,0.00)
mm_129786.1	chr15	82794789	82794989	-	1	NA	NA	NA	-644	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.005000	0.452736	
mm_24415.1	chr3	90514847	90515047	+	1	NA	NA	NA	512	NM_009113	20196	Mm.6523	NM_009113	ENSMUSG00000042312	S100a13	-	S100 calcium binding protein A13	protein-coding	0.045000	0.577114	13(GCTTATAAACTT,+,0.00)
mm_140664.1	chr17	12909789	12909989	-	1	NA	NA	NA	111	NM_001034866	240023	Mm.242315	NM_001034866	ENSMUSG00000073460	Pnldc1	Gm313	poly(A)-specific ribonuclease (PARN)-like domain containing 1	protein-coding	0.095000	0.661692	-96(GCTTTAAGGCCC,+,0.00)
mm_41392.1	chr5	90769755	90769955	+	1	NA	NA	NA	1337	NM_023785	57349	Mm.293614	NM_023785	ENSMUSG00000029372	Ppbp	2400003M24Rik|AI854500|CTAP3|CTAPIII|Cxcl7|LA-PF4|LDGF|MDGF|NAP-2|NAP-2-L1|Scyb7|TGB|TGB1|THBGB1|b-TG1|beta-TG	pro-platelet basic protein	protein-coding	0.020000	0.393035	
mm_34423.1	chr4	145281440	145281640	+	1	NA	NA	NA	33607	NM_009401	21941	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0.015000	0.427861	
mm_168592.1	chr1	173880075	173880275	-	1	NA	NA	NA	12	NM_001170853	100040462	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	0.005000	0.422886	
mm_114209.1	chr13	56151980	56152180	+	1	NA	NA	NA	-16530	NM_001159513	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.025000	0.467662	
mm_156922.1	chrX	169150169	169150369	+	1	NA	NA	NA	36940	NM_001290371	11704	Mm.391342	NM_009666	ENSMUSG00000031354	Amelx	ALGN|AMGL|AMGX|Amel|Amg|LRAP|Rgsc888	amelogenin, X-linked	protein-coding	0.005000	0.308458	
mm_57220.1	chr6	123260159	123260359	-	1	NA	NA	NA	-1848	NM_001163161	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.000000	0.432836	
mm_128742.1	chr15	64312517	64312717	-	1	NA	NA	NA	56	NM_001276462	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.190000	0.810945	
mm_106579.1	chr11	120727218	120727418	-	1	NA	NA	NA	-34	NM_001347608	67880	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	0.030000	0.562189	-12(CCTTTTCAAGAC,+,0.00)
mm_85238.1	chr9	98873828	98874028	-	1	NA	NA	NA	9161	NM_028033	71979	Mm.140843	NM_028033	ENSMUSG00000090470	Prr23a3	2410012M07Rik	proline rich 23A, member 3	protein-coding	0.020000	0.467662	
mm_164165.1	chr15	73723058	73723258	+	1	NA	NA	NA	13	NM_001166389	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.015000	0.562189	
mm_101304.1	chr11	22342191	22342391	-	1	NA	NA	NA	-55496	NM_001252515	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0.005000	0.477612	
mm_95709.1	chr11	54486323	54486523	+	1	NA	NA	NA	-36422	NM_001252494	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.000000	0.393035	-33(TGCTATTTAAAG,-,0.00),-31(CTATTTAAAGCA,+,0.00)
mm_128358.1	chr15	39964158	39964358	-	1	NA	NA	NA	1609	NR_045719	105976	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0.015000	0.492537	
mm_111786.1	chr12	104751819	104752019	-	1	NA	NA	NA	33	NM_148948	192119	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	0.190000	0.810945	
mm_146936.1	chr18	32136413	32136613	-	1	NA	NA	NA	1692	NM_008934	19123	Mm.2786	NM_008934	ENSMUSG00000024386	Proc	PC	protein C	protein-coding	0.015000	0.462687	25(AGCTCTAAAGGC,-,0.00),26(GCTCTAAAGGCC,+,0.00)
mm_92803.1	chr10	81365716	81365916	-	1	NA	NA	NA	4	NM_001014836	432479	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.030000	0.601990	
mm_164570.1	chr17	21535381	21535581	-	1	NA	NA	NA	-58	NM_144515	22710	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	0.025000	0.572139	
mm_8131.1	chr1	136233945	136234145	-	1	NA	NA	NA	235	NM_028872	67313	Mm.36763	NM_028872	ENSMUSG00000041605	5730559C18Rik	1700034M08Rik|4933426C09Rik|AI586180|D1Mgi54	RIKEN cDNA 5730559C18 gene	protein-coding	0.045000	0.597015	
mm_8507.1	chr1	154394488	154394688	-	1	NA	NA	NA	-137682	NR_040629	78112	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	0.005000	0.288557	
mm_135231.1	chr16	36895765	36895965	-	1	NA	NA	NA	1324	NR_040476	68306	Mm.399193	NR_040476	ENSMUSG00000084834	4930565N06Rik	4930428L02Rik	RIKEN cDNA 4930565N06 gene	ncRNA	0.005000	0.457711	
mm_118090.1	chr13	103774419	103774619	-	1	NA	NA	NA	-9937	NM_172592	218543	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0.150000	0.721393	
mm_131212.1	chr16	8829909	8830109	+	1	NA	NA	NA	-91	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.130000	0.731343	
mm_53007.1	chr6	123270753	123270953	+	1	NA	NA	NA	8746	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.005000	0.353234	55(TGCTTTAAATGA,-,0.00)
mm_34476.1	chr4	148333382	148333582	+	1	NA	NA	NA	-45517	NM_001083342	242748	Mm.33873	NM_001083342	ENSMUSG00000041544	Ptchd2	Disp3|G630052C06Rik|RNDEu-2	patched domain containing 2	protein-coding	0.010000	0.527363	
mm_74467.1	chr8	4217181	4217381	-	1	NA	NA	NA	31	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.080000	0.671642	
mm_135109.1	chr16	35769273	35769473	-	1	NA	NA	NA	-17	NM_153550	224132	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0.110000	0.761194	
mm_161708.1	chr17	24887385	24887585	+	1	NA	NA	NA	4	NM_027141	79043	Mm.274794	NM_027141	ENSMUSG00000024160	Spsb3	2310012N15Rik|3300001M01Rik|SSB3|Tce1|mKIAA4204	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding	0.020000	0.542289	
mm_629.1	chr1	40250882	40251082	+	1	NA	NA	NA	-15604	NM_001123382	16177	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.000000	0.383085	
mm_150299.1	chr19	34551102	34551302	+	1	NA	NA	NA	508	NM_008332	15958	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0.005000	0.358209	
mm_56288.1	chr6	91489924	91490124	-	1	NA	NA	NA	16273	NM_028766	74122	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	0.025000	0.587065	
mm_33093.1	chr4	124695908	124696108	+	1	NA	NA	NA	-2454	NM_026031	67205	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11l	2700082D03Rik|CGI-94|Cgi94|Utp11	UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	protein-coding	0.025000	0.537313	
mm_133964.1	chr16	4092241	4092441	-	1	NA	NA	NA	-14531	NM_026508	68015	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0.010000	0.432836	
mm_48417.1	chr5	140340370	140340570	-	1	NA	NA	NA	8548	NM_008637	17766	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0.015000	0.577114	
mm_85911.1	chr9	111057144	111057344	-	1	NA	NA	NA	0	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.025000	0.517413	
mm_125745.1	chr15	73723069	73723269	+	1	NA	NA	NA	24	NM_001166389	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.015000	0.552239	
mm_62873.1	chr7	114745602	114745802	+	1	NA	NA	NA	-64	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	0.080000	0.681592	
mm_77995.1	chr9	8899742	8899942	+	1	NA	NA	NA	9	NM_008829	18667	Mm.12798	NM_008829	ENSMUSG00000031870	Pgr	9930019P03Rik|BB114106|ENSMUSG00000074510|NR3C3|PR|PR-A|PR-B	progesterone receptor	protein-coding	0.030000	0.497512	
mm_2520.1	chr1	106369800	106370000	+	1	NA	NA	NA	176731	NR_106164	102466254		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.000000	0.353234	
mm_71965.1	chr8	70529519	70529719	+	1	NA	NA	NA	1773	NM_001199631	14232	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|Fkbp38	FK506 binding protein 8	protein-coding	0.010000	0.616915	
mm_28117.1	chr3	86899336	86899536	-	1	NA	NA	NA	21448	NM_001195496	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.005000	0.258706	
mm_17439.1	chr2	27714135	27714335	-	1	NA	NA	NA	3652	NM_001290482	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.015000	0.651741	
mm_31135.1	chr4	43257673	43257873	+	1	NA	NA	NA	-9386	NM_177195	320571	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	0.030000	0.557214	
mm_98934.1	chr11	98356959	98357159	+	1	NA	NA	NA	1224	NR_045477	69338	Mm.398308	NR_045477	ENSMUSG00000085944	1700003D09Rik	-	RIKEN cDNA 1700003D09 gene	ncRNA	0.000000	0.587065	
mm_169719.1	chr15	77777679	77777879	-	1	NA	NA	NA	-22550	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.020000	0.597015	
mm_84740.1	chr9	75387137	75387337	-	1	NA	NA	NA	22122	NM_027418	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.025000	0.393035	
mm_134385.1	chr16	17214102	17214302	-	1	NA	NA	NA	6067	NM_001033338	239731	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	0.005000	0.532338	18(GCCTCTAAAGAG,-,0.00)
mm_113487.1	chr13	37376835	37377035	+	1	NA	NA	NA	31590	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.005000	0.452736	
mm_68432.1	chr7	109840817	109841017	-	1	NA	NA	NA	24762	NM_020052	56788	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	0.000000	0.482587	
mm_137458.1	chr17	26571013	26571213	+	1	NA	NA	NA	9601	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.015000	0.562189	
mm_151168.1	chr19	53197923	53198123	+	1	NA	NA	NA	54026	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.015000	0.487562	
mm_106730.1	chr12	3891233	3891433	+	1	NA	NA	NA	-411	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.075000	0.567164	
mm_13069.1	chr2	91118877	91119077	+	1	NA	NA	NA	833	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.005000	0.522388	-30(TCTTATATGGTG,+,0.00)
mm_143752.1	chr17	81582075	81582275	-	1	NA	NA	NA	156212	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.015000	0.368159	
mm_143649.1	chr17	79451540	79451740	-	1	NA	NA	NA	26245	NR_033463	74622	Mm.311921	NR_033463		4930429F11Rik	-	RIKEN cDNA 4930429F11 gene	ncRNA	0.010000	0.447761	
mm_43574.1	chr5	137745897	137746097	+	1	NA	NA	NA	28	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.025000	0.621891	
mm_136488.1	chr16	96082635	96082835	-	1	NA	NA	NA	-307	NM_145125	93871	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0.100000	0.781095	
mm_23713.1	chr3	69004895	69005095	+	1	NA	NA	NA	23	NM_133786	70099	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	0.115000	0.601990	
mm_167476.1	chr8	128418724	128418924	+	1	NA	NA	NA	59583	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.020000	0.477612	
mm_96929.1	chr11	70510996	70511196	+	1	NA	NA	NA	3520	NM_001013607	327956	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	0.005000	0.447761	
mm_163277.1	chr11	116021149	116021349	-	1	NA	NA	NA	3255	NM_008211	15081	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0.005000	0.427861	
mm_33436.1	chr4	130107503	130107703	+	1	NA	NA	NA	47	NM_026441	67898	Mm.20818	NM_026441	ENSMUSG00000028779	Pef1	2600002E23Rik|Peflin	penta-EF hand domain containing 1	protein-coding	0.055000	0.542289	
mm_142483.1	chr17	45733746	45733946	-	1	NA	NA	NA	-2	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0.045000	0.592040	
mm_954.1	chr1	57774787	57774987	+	1	NA	NA	NA	26	NM_144882	67198	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.120000	0.766169	
mm_33998.1	chr4	137913456	137913656	+	1	NA	NA	NA	51319	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.130000	0.781095	
mm_67290.1	chr7	78782942	78783142	-	1	NA	NA	NA	47	NM_023331	67308	Mm.193181	NM_023331	ENSMUSG00000030612	Mrpl46	3110052F15Rik|C15orf4|C80107|LIECG2|P2ECSL	mitochondrial ribosomal protein L46	protein-coding	0.080000	0.646766	37(TCTTTTAGGGCT,+,0.00)
mm_20650.1	chr2	132055836	132056036	-	1	NA	NA	NA	-25948	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.020000	0.477612	
mm_44301.1	chr5	8996525	8996725	-	1	NA	NA	NA	521	NM_023733	74114	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.015000	0.477612	
mm_68333.1	chr7	106504230	106504430	-	1	NA	NA	NA	-63257	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.015000	0.383085	-47(CTTTATATGCGC,+,0.00)
mm_51934.1	chr6	91683997	91684197	+	1	NA	NA	NA	30	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.100000	0.671642	
mm_34807.1	chr4	154869550	154869750	+	1	NA	NA	NA	65	NM_013783	27390	Mm.116944	NM_013783	ENSMUSG00000058183	Mmel1	Mell1|NEP2|NEPII|Nl1|SEP	membrane metallo-endopeptidase-like 1	protein-coding	0.015000	0.592040	36(GCCTTTAAGGAC,+,0.00)
mm_38057.1	chr4	134004491	134004691	-	1	NA	NA	NA	-3727	NM_026144	67422	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	0.020000	0.492537	
mm_156156.1	chrX	129957193	129957393	+	1	NA	NA	NA	207551	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.005000	0.353234	
mm_84163.1	chr9	59565002	59565202	-	1	NA	NA	NA	-13235	NM_175235	76183	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0.020000	0.517413	
mm_17654.1	chr2	32063152	32063352	-	1	NA	NA	NA	12306	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	0.020000	0.547264	
mm_130209.1	chr15	95528509	95528709	-	1	NA	NA	NA	-357	NM_001289653	54003	Mm.3959	NM_016743	ENSMUSG00000022454	Nell2	A330108N19Rik|R75516|mel91	NEL-like 2	protein-coding	0.075000	0.661692	
mm_43972.1	chr5	146079156	146079356	+	1	NA	NA	NA	-2	NM_001105160	100041449	Mm.301900	NM_001105160	ENSMUSG00000061292	Cyp3a59	ENSMUSG00000061292	cytochrome P450, family 3, subfamily a, polypeptide 59	protein-coding	0.000000	0.512438	
mm_114525.1	chr13	73467249	73467449	+	1	NA	NA	NA	-34	NM_145376	210992	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.105000	0.721393	
mm_148491.1	chr19	4153639	4153839	+	1	NA	NA	NA	-907	NM_016933	19265	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	0.025000	0.621891	
mm_78333.1	chr9	25252820	25253020	+	1	NA	NA	NA	481	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.145000	0.786070	
mm_55184.1	chr6	52164726	52164926	-	1	NA	NA	NA	5	NM_010451	15399	Mm.131	NM_010451	ENSMUSG00000014704	Hoxa2	AI324701|HOX1.11|Hox-1.11	homeobox A2	protein-coding	0.035000	0.412935	
mm_23743.1	chr3	69340391	69340591	+	1	NA	NA	NA	23573	NM_178726	242083	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	0.020000	0.452736	
mm_60358.1	chr7	44428703	44428903	+	1	NA	NA	NA	-13684	NM_198250	272381	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	0.085000	0.736318	
mm_35144.1	chr4	11559097	11559297	-	1	NA	NA	NA	277	NM_001256145	623474	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	0.070000	0.691542	
mm_153329.1	chr19	38124464	38124664	-	1	NA	NA	NA	247	NM_011255	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.085000	0.671642	
mm_72063.1	chr8	71469104	71469304	+	1	NA	NA	NA	10	NR_122114	66498	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	0.175000	0.756219	
mm_144055.1	chr17	90606977	90607177	-	1	NA	NA	NA	-151197	NM_001346959	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.005000	0.283582	
mm_166171.1	chr5	25181373	25181573	+	1	NA	NA	NA	-7	NM_026449	67909	Mm.141471	NM_026449	ENSMUSG00000028938	Galntl5	1700021B12Rik|Galnt15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	protein-coding	0.000000	0.512438	
mm_132113.1	chr16	31663777	31663977	+	1	NA	NA	NA	-58	NM_001252433	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.120000	0.726368	
mm_170464.1	chr1	89455305	89455505	+	1	NA	NA	NA	594	NM_001037136	347722	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.145000	0.771144	
mm_156919.1	chrX	169106584	169106784	+	1	NA	NA	NA	-6194	NM_001287530	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.015000	0.373134	
mm_32584.1	chr4	111252433	111252633	+	1	NA	NA	NA	-162473	NR_033793	67621	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0.000000	0.447761	
mm_155419.1	chrX	73490883	73491083	+	1	NA	NA	NA	7382	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.015000	0.552239	
mm_100594.1	chr11	120990467	120990667	+	1	NA	NA	NA	766	NM_139059	104318	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0.060000	0.771144	
mm_25993.1	chr3	134236392	134236592	+	1	NA	NA	NA	-3	NM_001004367	319478	Mm.224814	NM_001004367	ENSMUSG00000044365	Cxxc4	9330210J02Rik|C030003J12Rik|Idax	CXXC finger 4	protein-coding	0.085000	0.661692	
mm_132584.1	chr16	38362088	38362288	+	1	NA	NA	NA	-2	NM_001081984	64082	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.035000	0.547264	
mm_125088.1	chr15	27466611	27466811	+	1	NA	NA	NA	34	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.145000	0.701493	
mm_150549.1	chr19	39321491	39321691	+	1	NA	NA	NA	34506	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.000000	0.373134	
mm_10023.1	chr1	192092323	192092523	-	1	NA	NA	NA	176	NM_011633	22033	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.105000	0.646766	
mm_21360.1	chr2	157129927	157130127	-	1	NA	NA	NA	5195	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.005000	0.353234	-63(CCATTAATACCA,+,0.00)
mm_62504.1	chr7	102065406	102065606	+	1	NA	NA	NA	15	NM_001286689	102443350	Mm.292904	NM_001286689	ENSMUSG00000070425	Xndc1	Xndr	Xrcc1 N-terminal domain containing 1	protein-coding	0.075000	0.472637	
mm_53891.1	chr6	3377025	3377225	-	1	NA	NA	NA	22446	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.010000	0.398010	
mm_68108.1	chr7	102019433	102019633	-	1	NA	NA	NA	-1378	NM_010531	16068	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.005000	0.477612	
mm_99555.1	chr11	103649410	103649610	+	1	NA	NA	NA	1	NM_001033212	104582	Mm.44618	NM_001033212	ENSMUSG00000046215	Rprml	AW049332	reprimo-like	protein-coding	0.115000	0.731343	
mm_165456.1	chr2	158146248	158146448	-	1	NA	NA	NA	44	NM_009373	21817	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.125000	0.756219	
mm_113045.1	chr13	23575688	23575888	+	1	NA	NA	NA	25	NM_178204	319149	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	0.070000	0.527363	
mm_118472.1	chr14	11569945	11570145	+	1	NA	NA	NA	16492	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.005000	0.427861	60(GCTTTTATACCC,+,0.00)
mm_87123.1	chr10	33364251	33364451	+	1	NA	NA	NA	-107994	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.005000	0.323383	
mm_93719.1	chr10	119076086	119076286	-	1	NA	NA	NA	-16719	NR_045348	73400	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	0.035000	0.557214	
mm_142647.1	chr17	47502186	47502386	-	1	NA	NA	NA	1	NM_022015	63856	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0.100000	0.646766	
mm_5893.1	chr1	54438909	54439109	-	1	NA	NA	NA	17	NM_001033194	98488	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0.085000	0.681592	
mm_63509.1	chr7	127841855	127842055	+	1	NA	NA	NA	147	NM_009294	20909	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.045000	0.611940	
mm_32662.1	chr4	115093495	115093695	+	1	NA	NA	NA	4887	NM_001164557	67182	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	0.010000	0.547264	
mm_148285.1	chr18	82527689	82527889	-	1	NA	NA	NA	-26674	NM_001025256	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.010000	0.512438	
mm_73432.1	chr8	106136966	106137166	+	1	NA	NA	NA	-92	NM_176838	77411	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	0.075000	0.646766	
mm_141793.1	chr17	34342896	34343096	-	1	NA	NA	NA	1649	NM_010381	100504404	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	0.030000	0.482587	
mm_101247.1	chr11	20741778	20741978	-	1	NA	NA	NA	-322	NM_181411	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.060000	0.587065	
mm_22400.1	chr2	181240601	181240801	-	1	NA	NA	NA	1326	NM_183162	229003	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.035000	0.547264	
mm_58432.1	chr7	3297480	3297680	+	1	NA	NA	NA	4552	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.045000	0.512438	
mm_25408.1	chr3	107278969	107279169	+	1	NA	NA	NA	211	NM_026774	68576	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	0.085000	0.651741	
mm_53828.1	chr6	147531345	147531545	+	1	NA	NA	NA	55574	NM_025911	67015	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding	0.005000	0.497512	
mm_154829.1	chrX	18145783	18145983	+	1	NA	NA	NA	13	NM_028568	73547	Mm.159027	NM_028568	ENSMUSG00000025043	Dusp21	1700094E07Rik|DSP21	dual specificity phosphatase 21	protein-coding	0.010000	0.497512	
mm_51903.1	chr6	91156627	91156827	+	1	NA	NA	NA	-88	NM_144919	232232	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	0.080000	0.696517	
mm_138790.1	chr17	37275975	37276175	+	1	NA	NA	NA	4343	NM_146515	258508	Mm.377544	NM_146515	ENSMUSG00000061972	Olfr99	MOR156-1	olfactory receptor 99	protein-coding	0.000000	0.368159	
mm_103256.1	chr11	70992455	70992655	-	1	NA	NA	NA	-9529	NM_007573	12261	Mm.30049	NM_007573	ENSMUSG00000018446	C1qbp	AA407365|AA986492|D11Wsu182e|HABP1|P32|gC1qBP	complement component 1, q subcomponent binding protein	protein-coding	0.005000	0.472637	
mm_120917.1	chr14	76414887	76415087	+	1	NA	NA	NA	26	NM_001310646	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.130000	0.751244	
mm_111888.1	chr12	108275106	108275306	-	1	NA	NA	NA	211	NM_001159910	668158	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010	coiled-coil domain containing 85C	protein-coding	0.185000	0.845771	
mm_154831.1	chrX	18162573	18162773	+	1	NA	NA	NA	98	NM_001310444	22289	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	0.090000	0.671642	
mm_171806.1	chr5	129128447	129128647	-	1	NA	NA	NA	31797	NM_001347486	243277	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding	0.065000	0.517413	
mm_22646.1	chr3	14866762	14866962	+	1	NA	NA	NA	3324	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.035000	0.542289	
mm_166886.1	chr7	28085252	28085452	-	1	NA	NA	NA	14116	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.020000	0.577114	
mm_119032.1	chr14	30484979	30485179	+	1	NA	NA	NA	5514	NM_133761	75901	Mm.28733	NM_133761	ENSMUSG00000021962	Dcp1a	1110066A22Rik|4930568L04Rik|AU019772|D14Ertd817e|Mitc1|SMIF	decapping mRNA 1A	protein-coding	0.010000	0.477612	
mm_20427.1	chr2	129304734	129304934	-	1	NA	NA	NA	5138	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.010000	0.422886	
mm_135226.1	chr16	36784852	36785052	-	1	NA	NA	NA	10	NM_001145899	57738	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.020000	0.482587	
mm_169456.1	chr14	63193762	63193962	-	1	NA	NA	NA	-337	NM_201610	382913	Mm.239490	NM_201610	ENSMUSG00000035121	Neil2	Gm1212|NEH2	nei like 2 (E. coli)	protein-coding	0.065000	0.681592	
mm_61254.1	chr7	65862033	65862233	+	1	NA	NA	NA	-3	NM_001291184	18553	Mm.294007	NM_011048	ENSMUSG00000030513	Pcsk6	C86343|Pace4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding	0.210000	0.845771	-33(CGGCTTTAAAAG,-,0.00),-32(GGCTTTAAAAGG,-,0.00),-31(GCTTTAAAAGGC,+,0.00),-30(CTTTAAAAGGCG,+,0.00)
mm_60193.1	chr7	43408168	43408368	+	1	NA	NA	NA	-12	NM_172900	243958	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0.000000	0.507463	
mm_130477.1	chr15	98728054	98728254	-	1	NA	NA	NA	44	NM_024169	66120	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.035000	0.621891	
mm_20668.1	chr2	132145254	132145454	-	1	NA	NA	NA	-246	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.065000	0.616915	-44(GCTTTAAAGCGG,+,0.00)
mm_87145.1	chr10	34483537	34483737	+	1	NA	NA	NA	237	NM_010237	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.020000	0.497512	
mm_173356.1	chrY	90819215	90819415	+	1	NA	NA	NA	20091	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.050000	0.592040	
mm_172057.1	chr6	129059702	129059902	+	1	NA	NA	NA	13901	NR_024263	232408	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.035000	0.522388	
mm_9033.1	chr1	166946317	166946517	-	1	NA	NA	NA	53313	NR_037988	100503962	Mm.216842	NR_037988	ENSMUSG00000102548	Gm16701	-	predicted gene, 16701	ncRNA	0.035000	0.487562	
mm_87866.1	chr10	61297704	61297904	+	1	NA	NA	NA	-32	NM_011073	18646	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	0.020000	0.567164	-19(CATTTTAAAAGC,-,0.00)
mm_97871.1	chr11	83175952	83176152	+	1	NA	NA	NA	866	NM_001302559	20558	Mm.38192	NM_011410	ENSMUSG00000000204	Slfn4	AI450778	schlafen 4	protein-coding	0.020000	0.432836	
mm_76952.1	chr8	105991647	105991847	-	1	NA	NA	NA	26	NM_001301204	319446	Mm.248357	NM_176913	ENSMUSG00000053687	Dpep2	F630103D06Rik|MBD-2	dipeptidase 2	protein-coding	0.010000	0.582090	
mm_30225.1	chr3	145648619	145648819	-	1	NA	NA	NA	1266	NM_010516	16007	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0.025000	0.562189	
mm_73150.1	chr8	94994183	94994383	+	1	NA	NA	NA	9884	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.040000	0.651741	
mm_96553.1	chr11	68888500	68888700	+	1	NA	NA	NA	47	NM_177060	320040	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	0.025000	0.562189	
mm_14657.1	chr2	137194256	137194456	+	1	NA	NA	NA	-77836	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.015000	0.477612	
mm_120703.1	chr14	70977168	70977368	+	1	NA	NA	NA	87161	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.000000	0.512438	
mm_145892.1	chr18	65583088	65583288	+	1	NA	NA	NA	2958	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.005000	0.427861	
mm_140328.1	chr17	86753989	86754189	+	1	NA	NA	NA	225	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.050000	0.631841	
mm_172231.1	chr6	67625867	67626067	-	1	NA	NA	NA	-60268	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.045000	0.636816	
mm_94276.1	chr11	3923666	3923866	+	1	NA	NA	NA	8195	NM_001130459	21452	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	0.030000	0.532338	
mm_169460.1	chr1	46416218	46416418	+	1	NA	NA	NA	-9200	NM_001310335	100101919	Mm.383402	NM_001310335	ENSMUSG00000101337	Dnah7c	Dnahc7c	dynein, axonemal, heavy chain 7C	protein-coding	0.015000	0.522388	
mm_15366.1	chr2	156420976	156421176	+	1	NA	NA	NA	167	NM_001291123	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.100000	0.721393	
mm_32724.1	chr4	116557031	116557231	+	1	NA	NA	NA	-596	NM_029868	77110	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	0.080000	0.616915	
mm_74772.1	chr8	21702619	21702819	-	1	NA	NA	NA	928	NM_001007582	382000	Mm.14269	NM_001007582	ENSMUSG00000058618	AY761184	CRS1C-3|CRS1C-6	cDNA sequence AY761184	protein-coding	0.020000	0.527363	
mm_67247.1	chr7	75309183	75309383	-	1	NA	NA	NA	-21	NM_153579	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.035000	0.537313	
mm_20607.1	chr2	131562395	131562595	-	1	NA	NA	NA	-210	NM_013460	11550	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	0.105000	0.756219	
mm_50342.1	chr6	48540394	48540594	+	1	NA	NA	NA	2925	NM_133764	76252	Mm.30214	NM_133764	ENSMUSG00000039347	Atp6v0e2	0610006O14Rik|NM9.2	ATPase, H+ transporting, lysosomal V0 subunit E2	protein-coding	0.005000	0.537313	
mm_97660.1	chr11	79579049	79579249	+	1	NA	NA	NA	-12063	NM_175543	268451	Mm.130656	NM_175543	ENSMUSG00000017639	Rab11fip4	A730072L08Rik|RAB11-FIP4|mKIAA1821	RAB11 family interacting protein 4 (class II)	protein-coding	0.000000	0.333333	
mm_72589.1	chr8	84338578	84338778	+	1	NA	NA	NA	-68276	NM_026350	67736	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	0.035000	0.547264	
mm_78473.1	chr9	32679650	32679850	+	1	NA	NA	NA	-16292	NM_011808	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.025000	0.437811	
mm_1238.1	chr1	62795955	62796155	+	1	NA	NA	NA	-1323	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.040000	0.542289	
mm_93581.1	chr10	116919549	116919749	-	1	NA	NA	NA	-22770	NM_001033333	237558	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	0.025000	0.517413	
mm_57287.1	chr6	124431506	124431706	-	1	NA	NA	NA	-16539	NM_001277805	19305	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1R|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0.030000	0.597015	
mm_144229.1	chr18	10324834	10325034	+	1	NA	NA	NA	-245	NM_001083628	381157	Mm.261535	NM_001083628	ENSMUSG00000042942	Greb1l	mKIAA4095	growth regulation by estrogen in breast cancer-like	protein-coding	0.035000	0.567164	
mm_132639.1	chr16	39984451	39984651	+	1	NA	NA	NA	1082206	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.075000	0.626866	
mm_62927.1	chr7	118600121	118600321	+	1	NA	NA	NA	2924	NM_001105252	74424	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	0.025000	0.487562	
mm_56758.1	chr6	116101734	116101934	-	1	NA	NA	NA	91540	NM_177412	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.005000	0.363184	
mm_119466.1	chr14	47276943	47277143	+	1	NA	NA	NA	-100	NM_080843	67296	Mm.23957	NM_080843	ENSMUSG00000048379	Socs4	3110032M18Rik|A730004F22Rik|AI427843|AU015727|AU015859|Socs7	suppressor of cytokine signaling 4	protein-coding	0.095000	0.726368	
mm_112008.1	chr12	110889689	110889889	-	1	NA	NA	NA	525	NM_001081057	104859	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	0.050000	0.567164	
mm_36066.1	chr4	57916218	57916418	-	1	NA	NA	NA	-54	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.020000	0.497512	
mm_140779.1	chr17	17877444	17877644	-	1	NA	NA	NA	6395	NM_013521	14293	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0.025000	0.487562	
mm_93805.1	chr10	120898972	120899172	-	1	NA	NA	NA	-101	NM_177092	320183	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	0.140000	0.751244	
mm_5790.1	chr1	51895940	51896140	-	1	NA	NA	NA	19938	NM_001290982	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.015000	0.452736	
mm_7636.1	chr1	127858937	127859137	-	1	NA	NA	NA	-9736	NM_178690	226407	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0.020000	0.417910	17(CAACATATAAGG,-,0.00)
mm_168645.1	chr1	185172056	185172256	-	1	NA	NA	NA	-32012	NM_001163754	98732	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	0.035000	0.502488	-34(TTCTATAAAAGT,-,0.00)
mm_66840.1	chr7	48881556	48881756	-	1	NA	NA	NA	-615	NM_001013368	108961	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.150000	0.776119	
mm_103274.1	chr11	72135656	72135856	-	1	NA	NA	NA	133	NM_001024927	327958	Mm.351793	NM_001024927	ENSMUSG00000040543	Pitpnm3	A330068P14Rik|AI848332|Ackr6|Gm880	PITPNM family member 3	protein-coding	0.175000	0.820896	-96(CTCCTTTAAGGG,-,0.00),-94(CCTTTAAGGGAG,+,0.00)
mm_155956.1	chrX	105120295	105120495	+	1	NA	NA	NA	17	NM_053201	107528	Mm.24341	NM_053201	ENSMUSG00000031227	Magee1	AI847422|DAMAGE|mMage-e1	melanoma antigen, family E, 1	protein-coding	0.080000	0.626866	
mm_73001.1	chr8	93810696	93810896	+	1	NA	NA	NA	-42	NM_010308	14681	Mm.251445	NM_010308	ENSMUSG00000031748	Gnao1	AW050213|Galphao|Gnao|alphaO	guanine nucleotide binding protein, alpha O	protein-coding	0.120000	0.751244	
mm_146306.1	chr18	80256173	80256373	+	1	NA	NA	NA	-33	NM_025861	66943	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.125000	0.691542	
mm_82756.1	chr9	26860786	26860986	-	1	NA	NA	NA	-63	NM_001113323	70893	Mm.78118	NM_001113323	ENSMUSG00000031966	Glb1l3	4921509F24Rik	galactosidase, beta 1 like 3	protein-coding	0.015000	0.527363	
mm_52473.1	chr6	114248289	114248489	+	1	NA	NA	NA	-34246	NM_178703	232333	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.015000	0.542289	
mm_38127.1	chr4	134563349	134563549	-	1	NA	NA	NA	4402	NR_105829	102465216		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.030000	0.507463	
mm_52442.1	chr6	113624573	113624773	+	1	NA	NA	NA	652	NM_009507	22346	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0.030000	0.497512	
mm_147958.1	chr18	67061232	67061432	-	1	NA	NA	NA	-26966	NM_177137	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.015000	0.417910	
mm_163742.1	chr13	119727682	119727882	-	1	NA	NA	NA	28100	NM_175538	245269	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0.050000	0.597015	
mm_158108.1	chrX	102071211	102071411	-	1	NA	NA	NA	-4	NM_001278534	331474	Mm.23297	NM_183318	ENSMUSG00000049191	Rgag4	6430402L03Rik|Mar5|Mart5|mKIAA2001	retrotransposon gag domain containing 4	protein-coding	0.095000	0.651741	83(GAGCTTAAAAGG,-,0.00),85(GCTTAAAAGGCG,+,0.00)
mm_85966.1	chr9	112141299	112141499	-	1	NA	NA	NA	-22688	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.015000	0.333333	
mm_53225.1	chr6	127130135	127130335	+	1	NA	NA	NA	-19154	NR_040274	77558	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.025000	0.393035	-65(CTTTAAATAGGA,+,0.00)
mm_140142.1	chr17	79999782	79999982	+	1	NA	NA	NA	62386	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.035000	0.562189	
mm_99853.1	chr11	109362852	109363052	+	1	NA	NA	NA	158	NM_010303	14674	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0.160000	0.791045	
mm_51469.1	chr6	82960114	82960314	+	1	NA	NA	NA	13292	NM_033079	110958	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	0.000000	0.393035	
mm_131364.1	chr16	13780676	13780876	+	1	NA	NA	NA	77	NM_001039521	106298	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	0.135000	0.721393	
mm_33716.1	chr4	134019345	134019545	+	1	NA	NA	NA	-629	NM_145833	83557	Mm.302567	NM_145833	ENSMUSG00000050966	Lin28a	AL024421|ENSMUSG00000070700|Gm10299|Lin-28|Lin28|Tex17|lin-28A	lin-28 homolog A (C. elegans)	protein-coding	0.025000	0.611940	
mm_55277.1	chr6	54241803	54242003	-	1	NA	NA	NA	-22955	NM_001311133	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.020000	0.457711	
mm_90533.1	chr10	128086237	128086437	+	1	NA	NA	NA	1051	NR_030442	751518		NR_030442	ENSMUSG00000093245	Mir677	Mirn677|mir-677|mmu-mir-677	microRNA 677	ncRNA	0.015000	0.472637	
mm_157072.1	chrX	8206411	8206611	-	1	NA	NA	NA	14	NM_145907	53627	Mm.443425	NM_016913	ENSMUSG00000031169	Porcn	2410004O13Rik|AW045557|DXHXS7465e|Mg61|Mporc|Ppn|mMg61|porc	porcupine homolog (Drosophila)	protein-coding	0.105000	0.726368	-13(GGATTTAAAGGG,-,0.00)
mm_80611.1	chr9	88286705	88286905	+	1	NA	NA	NA	-40804	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	0.030000	0.572139	
mm_34205.1	chr4	140924200	140924400	+	1	NA	NA	NA	17940	NM_008812	18600	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	0.030000	0.572139	
mm_73435.1	chr8	106150288	106150488	+	1	NA	NA	NA	-11	NM_133792	192654	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.065000	0.606965	
mm_151411.1	chr19	56593591	56593791	+	1	NA	NA	NA	45430	NM_025811	66866	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.030000	0.487562	60(CCTTTAATGAGC,+,0.00)
mm_66801.1	chr7	47133551	47133751	-	1	NA	NA	NA	33	NM_013643	19259	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0.025000	0.527363	1(GAGCATTAAAGG,-,0.00),3(GCATTAAAGGAC,+,0.00)
mm_48268.1	chr5	137962821	137963021	-	1	NA	NA	NA	38	NM_080450	118446	Mm.332771	NM_080450	ENSMUSG00000056966	Gjc3	Cx29|Gje1	gap junction protein, gamma 3	protein-coding	0.015000	0.537313	
mm_138705.1	chr17	36023764	36023964	+	1	NA	NA	NA	-3304	NM_008207	15042	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0.010000	0.537313	
mm_39478.1	chr5	20496990	20497190	+	1	NA	NA	NA	385034	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.020000	0.507463	
mm_121747.1	chr14	18893535	18893735	-	1	NA	NA	NA	-8	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0.210000	0.830846	
mm_112551.1	chr13	12460584	12460784	+	1	NA	NA	NA	1054	NM_001291060	56048	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.025000	0.452736	
mm_69655.1	chr7	139957939	139958139	-	1	NA	NA	NA	-279	NR_029589	387198		NR_029589	ENSMUSG00000065502	Mir202	Mirn202|mir-202|mmu-mir-202	microRNA 202	ncRNA	0.025000	0.587065	-33(GTGTATAAAAGG,-,0.00)
mm_101237.1	chr11	20656792	20656992	-	1	NA	NA	NA	24915	NM_001038625	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.030000	0.656716	
mm_2217.1	chr1	89866299	89866499	+	1	NA	NA	NA	64777	NM_010262	14472	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.010000	0.407960	
mm_158666.1	chrX	157518492	157518692	-	1	NA	NA	NA	-22212	NR_040420	625253	Mm.463485	NR_040420		Gm6568	EG625253	DnaJ (Hsp40) homolog, subfamily B, member 9 pseudogene	pseudo	0.045000	0.432836	-83(TTTTTTAAAGAC,+,0.00)
mm_15804.1	chr2	164485981	164486181	+	1	NA	NA	NA	-59	NM_001048227	52840	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	0.065000	0.651741	
mm_63180.1	chr7	125488908	125489108	+	1	NA	NA	NA	2534	NM_026330	67711	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.010000	0.437811	
mm_156215.1	chrX	134686459	134686659	+	1	NA	NA	NA	40	NM_001202500	100503043	Mm.31961	NM_001202500	ENSMUSG00000049804	Armcx4	AI448196|Gm195	armadillo repeat containing, X-linked 4	protein-coding	0.100000	0.721393	
mm_133660.1	chr16	91835336	91835536	+	1	NA	NA	NA	96194	NM_138597	28080	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.005000	0.398010	
mm_129613.1	chr15	79971025	79971225	-	1	NA	NA	NA	27901	NR_106072	102465699		NR_106072	ENSMUSG00000099222	Mir7213	Gm27377|mmu-mir-7213	microRNA 7213	ncRNA	0.030000	0.542289	-34(GGGTATTAAAGG,-,0.00)
mm_156207.1	chrX	134585613	134585813	+	1	NA	NA	NA	59	NM_019865	19982	Mm.286408	NM_019865	ENSMUSG00000079435	Rpl36a	L44L|Rpl44	ribosomal protein L36A	protein-coding	0.065000	0.577114	
mm_116624.1	chr13	48880581	48880781	-	1	NA	NA	NA	-9796	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.005000	0.363184	
mm_23991.1	chr3	86312106	86312306	+	1	NA	NA	NA	87516	NM_001077687	80877	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	0.010000	0.482587	-31(TTTTTTAAAGAG,+,0.00)
mm_76503.1	chr8	86841706	86841906	-	1	NA	NA	NA	43452	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.005000	0.547264	
mm_13128.1	chr2	91730836	91731036	+	1	NA	NA	NA	798	NM_001080754	228361	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	0.015000	0.338308	
mm_121936.1	chr14	24004133	24004333	-	1	NA	NA	NA	-28	NM_001253374	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.115000	0.736318	
mm_94309.1	chr11	4218135	4218335	+	1	NA	NA	NA	-16	NM_028022	71962	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik	GATS protein-like 3	protein-coding	0.085000	0.681592	
mm_75643.1	chr8	65037017	65037217	-	1	NA	NA	NA	219	NM_001297554	100038489	Mm.58847	NM_001297554	ENSMUSG00000079042	Apela	ENSMUSG00000074303|Ela|Ende|Gm10664	apelin receptor early endogenous ligand	protein-coding	0.020000	0.482587	
mm_47926.1	chr5	135012763	135012963	-	1	NA	NA	NA	294	NR_026688	69812	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0.015000	0.587065	
mm_48292.1	chr5	138195546	138195746	-	1	NA	NA	NA	1332	NM_177878	330216	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	0.015000	0.432836	
mm_107158.1	chr12	24572484	24572684	+	1	NA	NA	NA	297	NM_001161406	195733	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead-like 1 (Drosophila)	protein-coding	0.095000	0.776119	
mm_95016.1	chr11	32000332	32000532	+	1	NA	NA	NA	13	NM_008741	18197	Mm.3304	NM_008741	ENSMUSG00000020297	Nsg2	-	neuron specific gene family member 2	protein-coding	0.065000	0.646766	
mm_171548.1	chr4	147025038	147025238	+	1	NA	NA	NA	3288	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.005000	0.512438	
mm_71568.1	chr8	54077074	54077274	+	1	NA	NA	NA	-358	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding	0.120000	0.736318	
mm_148382.1	chr19	3323233	3323433	+	1	NA	NA	NA	32	NM_013495	12894	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0.145000	0.771144	
mm_65496.1	chr7	25718604	25718804	-	1	NA	NA	NA	349	NM_028771	52132	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.015000	0.432836	
mm_21451.1	chr2	160656130	160656330	-	1	NA	NA	NA	10333	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.010000	0.507463	
mm_124118.1	chr14	79521763	79521963	-	1	NA	NA	NA	6189	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.000000	0.358209	
mm_69477.1	chr7	133759990	133760190	-	1	NA	NA	NA	179	NM_001286030	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.040000	0.562189	
mm_107969.1	chr12	72761192	72761392	+	1	NA	NA	NA	81	NM_008910	19042	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.170000	0.830846	
mm_33915.1	chr4	136462503	136462703	+	1	NA	NA	NA	-7158	NM_024452	269593	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	0.130000	0.766169	
mm_15491.1	chr2	157566836	157567036	+	1	NA	NA	NA	-575	NM_016916	53619	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0.025000	0.492537	
mm_130470.1	chr15	98677359	98677559	-	1	NA	NA	NA	2	NM_172612	223881	Mm.274010	NM_172612	ENSMUSG00000054855	Rnd1	A830014L09Rik|Arhs	Rho family GTPase 1	protein-coding	0.065000	0.626866	
mm_118215.1	chr13	110280058	110280258	-	1	NA	NA	NA	48	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding	0.070000	0.606965	
mm_69963.1	chr7	142376513	142376713	-	1	NA	NA	NA	-2867	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.020000	0.537313	
mm_151252.1	chr19	53929168	53929368	+	1	NA	NA	NA	-15038	NM_001168505	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.000000	0.238806	
mm_151884.1	chr19	5798475	5798675	-	1	NA	NA	NA	-2594	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.010000	0.353234	
mm_128679.1	chr15	60820058	60820258	-	1	NA	NA	NA	-2807	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0.015000	0.353234	
mm_43094.1	chr5	124451118	124451318	+	1	NA	NA	NA	4514	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.020000	0.527363	
mm_170520.1	chr19	31944294	31944494	-	1	NA	NA	NA	75633	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.000000	0.462687	-66(CTCCATTTAAGC,-,0.00),-64(CCATTTAAGCCC,+,0.00)
mm_156630.1	chrX	155622557	155622757	+	1	NA	NA	NA	670	NM_001093750	211612	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	0.055000	0.572139	
mm_134214.1	chr16	11203186	11203386	-	1	NA	NA	NA	6	NM_025546	66409	Mm.28291	NM_025546	ENSMUSG00000005846	Rsl1d1	2410005K20Rik|C76439|pBK1	ribosomal L1 domain containing 1	protein-coding	0.095000	0.611940	
mm_91275.1	chr10	24645294	24645494	-	1	NA	NA	NA	49952	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.020000	0.442786	
mm_1370.1	chr1	66467853	66468053	+	1	NA	NA	NA	-494	NM_175510	329178	Mm.44798	NM_175510	ENSMUSG00000055567	Unc80	C030018G13Rik|C230061B10Rik|UNC-80	unc-80, NALCN activator	protein-coding	0.055000	0.641791	
mm_9902.1	chr1	187142959	187143159	-	1	NA	NA	NA	17921	NR_040554	69308	Mm.490882	NR_040554	ENSMUSG00000089730	1700007P06Rik	-	RIKEN cDNA 1700007P06 gene	ncRNA	0.015000	0.477612	
mm_134260.1	chr16	13749928	13750128	-	1	NA	NA	NA	-19544	NM_011987	26565	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	0.000000	0.447761	
mm_53780.1	chr6	146502221	146502421	+	1	NA	NA	NA	-98	NM_019923	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.095000	0.766169	
mm_124722.1	chr15	6579922	6580122	+	1	NA	NA	NA	175	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.035000	0.507463	
mm_134100.1	chr16	9994906	9995106	-	1	NA	NA	NA	-2473	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.070000	0.661692	
mm_159007.1	chr1	162698026	162698226	-	1	NA	NA	NA	-39907	NM_001177581	100038657	Mm.416999	NM_001177581	ENSMUSG00000091060	7420461P10Rik	ENSMUSG00000073516	RIKEN cDNA 7420461P10 gene	protein-coding	0.020000	0.577114	
mm_36646.1	chr4	94533208	94533408	-	1	NA	NA	NA	23488	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.000000	0.358209	
mm_69961.1	chr7	142376407	142376607	-	1	NA	NA	NA	-2761	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.015000	0.562189	
mm_116627.1	chr13	48949049	48949249	-	1	NA	NA	NA	18679	NM_001033268	218236	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0.025000	0.502488	
mm_89942.1	chr10	111278643	111278843	+	1	NA	NA	NA	-19936	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.015000	0.417910	
mm_167336.1	chr8	71575811	71576011	+	1	NA	NA	NA	6984	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.000000	0.378109	83(CCTTTTAAACAT,+,0.00)
mm_68722.1	chr7	120201294	120201494	-	1	NA	NA	NA	594	NM_016669	12971	Mm.9114	NM_016669	ENSMUSG00000030905	Crym	-	crystallin, mu	protein-coding	0.030000	0.542289	
mm_2099.1	chr1	87776839	87777039	+	1	NA	NA	NA	-7632	NR_028519	100217415	Mm.453537	NR_028519	ENSMUSG00000089281	Scarna6	MBI-46	small Cajal body-specific RNA 6	ncRNA	0.010000	0.502488	
mm_83987.1	chr9	57434827	57435027	-	1	NA	NA	NA	5187	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.040000	0.587065	
mm_138245.1	chr17	34587561	34587761	+	1	NA	NA	NA	-2145	NM_134116	106512	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.160000	0.776119	
mm_160935.1	chr11	93886846	93887046	+	1	NA	NA	NA	727	NM_134012	103537	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	0.045000	0.542289	
mm_32786.1	chr4	116711803	116712003	+	1	NA	NA	NA	2973	NM_026714	68394	Mm.425201	NM_026714	ENSMUSG00000028689	Ccdc163	0610037D15Rik|4933430J04Rik	coiled-coil domain containing 163	protein-coding	0.025000	0.467662	
mm_80201.1	chr9	72408470	72408670	+	1	NA	NA	NA	-29959	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.030000	0.477612	
mm_135603.1	chr16	52142859	52143059	-	1	NA	NA	NA	111410	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.035000	0.422886	
mm_167842.1	chrM	12415	12615	-	1	NA	NA	NA	NA	NA									0.015000	0.422886	
mm_93442.1	chr10	109903722	109903922	-	1	NA	NA	NA	96397	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.030000	0.537313	
mm_46975.1	chr5	115194166	115194366	-	1	NA	NA	NA	115	NM_001310712	29867	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	0.120000	0.771144	38(CCGCATTTAAGC,-,0.00),40(GCATTTAAGCGG,+,0.00)
mm_27666.1	chr3	65380840	65381040	-	1	NA	NA	NA	11613	NM_026155	67437	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.005000	0.442786	
mm_165309.1	chr2	102568858	102569058	-	1	NA	NA	NA	18937	NM_173749	210622	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	0.000000	0.388060	-50(CCTTTTCTAGGA,+,0.00)
mm_150957.1	chr19	46395259	46395459	+	1	NA	NA	NA	376	NM_016860	54130	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0.040000	0.547264	-12(GGCTCTAAGAGA,-,0.00)
mm_105920.1	chr11	115004094	115004294	-	1	NA	NA	NA	-2314	NM_134158	140497	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0.010000	0.502488	
mm_80144.1	chr9	70835022	70835222	+	1	NA	NA	NA	99686	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.010000	0.487562	
mm_112439.1	chr13	5803738	5803938	+	1	NA	NA	NA	54254	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.010000	0.432836	
mm_36676.1	chr4	96348531	96348731	-	1	NA	NA	NA	49	NM_001004141	100066	Mm.26915	NM_001004141	ENSMUSG00000066097	Cyp2j11	AI314783|Cyp2j11-ps	cytochrome P450, family 2, subfamily j, polypeptide 11	protein-coding	0.005000	0.507463	
mm_102650.1	chr11	63270916	63271116	-	1	NA	NA	NA	115053	NR_105772	102466632		NR_105772	ENSMUSG00000098829	Mir6354	Gm27282|mmu-mir-6354	microRNA 6354	ncRNA	0.015000	0.522388	
mm_95805.1	chr11	55109741	55109941	+	1	NA	NA	NA	11856	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.010000	0.427861	
mm_161491.1	chr15	85821773	85821973	-	1	NA	NA	NA	-140	NM_011105	18766	Mm.89965	NM_011105	ENSMUSG00000052496	Pkdrej	-	polycystin (PKD) family receptor for egg jelly	protein-coding	0.085000	0.681592	
mm_14564.1	chr2	134991926	134992126	+	1	NA	NA	NA	205862	NM_001145830	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding	0.000000	0.333333	
mm_49026.1	chr6	4759524	4759724	+	1	NA	NA	NA	12318	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.000000	0.308458	
mm_17339.1	chr2	26601542	26601742	-	1	NA	NA	NA	2775	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.000000	0.492537	
mm_37387.1	chr4	121014530	121014730	-	1	NA	NA	NA	2617	NM_133716	69780	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	0.005000	0.402985	
mm_130825.1	chr15	101845843	101846043	-	1	NA	NA	NA	4843	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.050000	0.606965	
mm_18590.1	chr2	66634612	66634812	-	1	NA	NA	NA	250	NM_001290674	20274	Mm.440889	NM_018852	ENSMUSG00000075316	Scn9a	Nav1.7|PN1|mKIAA4197	sodium channel, voltage-gated, type IX, alpha	protein-coding	0.055000	0.626866	
mm_173052.1	chrX	122405476	122405676	+	1	NA	NA	NA	-8191	NM_138742	54561	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	0.045000	0.482587	
mm_93689.1	chr10	117817297	117817497	-	1	NA	NA	NA	-24692	NM_134010	103468	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.020000	0.373134	-62(TCTTTTATGACC,+,0.00)
mm_26310.1	chr3	142519186	142519386	+	1	NA	NA	NA	-11050	NM_001083312	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.005000	0.422886	
mm_79055.1	chr9	46229912	46230112	+	1	NA	NA	NA	1382	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.040000	0.587065	
mm_117816.1	chr13	97967551	97967751	-	1	NA	NA	NA	238514	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0.015000	0.532338	
mm_107486.1	chr12	38780011	38780211	+	1	NA	NA	NA	29	NM_007960	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.050000	0.542289	
mm_32810.1	chr4	117126687	117126887	+	1	NA	NA	NA	-26	NM_175030	242646	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	0.010000	0.582090	
mm_123863.1	chr14	72539110	72539310	-	1	NA	NA	NA	170793	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.010000	0.487562	
mm_94752.1	chr11	21116774	21116974	+	1	NA	NA	NA	25550	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.005000	0.437811	
mm_145381.1	chr18	57094984	57095184	+	1	NA	NA	NA	-38006	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.005000	0.417910	
mm_153516.1	chr19	41665879	41666079	-	1	NA	NA	NA	77328	NR_106166	102465884		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	0.010000	0.482587	
mm_119473.1	chr14	47310452	47310652	+	1	NA	NA	NA	12238	NM_178684	218975	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	0.025000	0.597015	
mm_67298.1	chr7	79148922	79149122	-	1	NA	NA	NA	38	NM_001045489	17304	Mm.1451	NM_008594	ENSMUSG00000030605	Mfge8	AA408458|AI325141|MFG-E8|MP47|Mfgm|P47|SED1|lactadherin	milk fat globule-EGF factor 8 protein	protein-coding	0.100000	0.676617	
mm_20658.1	chr2	132111373	132111573	-	1	NA	NA	NA	33635	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.030000	0.507463	
mm_46915.1	chr5	114443867	114444067	-	1	NA	NA	NA	60	NM_029956	77697	Mm.105182	NM_029956	ENSMUSG00000029575	Mmab	9130222L19Rik|ATR	methylmalonic aciduria (cobalamin deficiency) cblB type homolog (human)	protein-coding	0.095000	0.696517	
mm_167930.1	chrX	104670751	104670951	-	1	NA	NA	NA	213	NM_175358	108672	Mm.30574	NM_175358	ENSMUSG00000033906	Zdhhc15	6030457O13Rik	zinc finger, DHHC domain containing 15	protein-coding	0.105000	0.721393	
mm_104034.1	chr11	86257485	86257685	-	1	NA	NA	NA	-17	NM_027421	70422	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0.085000	0.611940	
mm_57826.1	chr6	129463033	129463233	-	1	NA	NA	NA	9646	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.383085	
mm_107948.1	chr12	72212209	72212409	+	1	NA	NA	NA	23437	NR_104446	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.025000	0.452736	
mm_80010.1	chr9	67840308	67840508	+	1	NA	NA	NA	12	NM_177184	320528	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.105000	0.716418	
mm_42093.1	chr5	110327548	110327748	+	1	NA	NA	NA	15387	NM_153400	231602	Mm.55948	NM_153400	ENSMUSG00000029503	P2rx2	P2X2a|P2x2	purinergic receptor P2X, ligand-gated ion channel, 2	protein-coding	0.010000	0.482587	
mm_22974.1	chr3	32708889	32709089	+	1	NA	NA	NA	443	NM_019673	56456	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0.140000	0.706468	
mm_45260.1	chr5	63968724	63968924	-	1	NA	NA	NA	73	NM_145923	100532	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0.130000	0.766169	
mm_10735.1	chr2	23068129	23068329	+	1	NA	NA	NA	28	NM_001102436	74159	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.080000	0.597015	
mm_138193.1	chr17	34282659	34282859	+	1	NA	NA	NA	5012	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.000000	0.407960	
mm_51427.1	chr6	78428391	78428591	+	1	NA	NA	NA	2508	NM_009042	19692	Mm.142731	NM_009042	ENSMUSG00000059654	Reg1	-	regenerating islet-derived 1	protein-coding	0.000000	0.353234	
mm_171346.1	chr4	108192981	108193181	+	1	NA	NA	NA	24841	NM_001167936	230590	Mm.301798	NM_001167936	ENSMUSG00000034645	Zyg11a	BC022150	zyg-11 family member A, cell cycle regulator	protein-coding	0.005000	0.398010	
mm_114232.1	chr13	56609191	56609391	+	1	NA	NA	NA	-312	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.015000	0.537313	
mm_120531.1	chr14	67176776	67176976	+	1	NA	NA	NA	-56416	NM_010095	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.025000	0.552239	
mm_85531.1	chr9	106476278	106476478	-	1	NA	NA	NA	571	NM_001311150	235587	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	0.000000	0.542289	
mm_40565.1	chr5	62811569	62811769	+	1	NA	NA	NA	-2154	NM_001170705	100322896	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0.010000	0.402985	
mm_32042.1	chr4	95967252	95967452	+	1	NA	NA	NA	-27	NM_030014	77963	Mm.49994	NM_030014	ENSMUSG00000028572	Hook1	A930033L17Rik|azh	hook microtubule tethering protein 1	protein-coding	0.185000	0.791045	
mm_114855.1	chr13	93303681	93303881	+	1	NA	NA	NA	24	NM_011982	26556	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0.130000	0.686567	-32(TGCTATTTAAAG,-,0.00)
mm_108336.1	chr12	80130800	80131000	+	1	NA	NA	NA	1944	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.000000	0.457711	
mm_58747.1	chr7	13278788	13278988	+	1	NA	NA	NA	62	NM_010715	16881	Mm.288179	NM_010715	ENSMUSG00000056394	Lig1	AL033288|LigI	ligase I, DNA, ATP-dependent	protein-coding	0.125000	0.661692	
mm_125981.1	chr15	76331225	76331425	+	1	NA	NA	NA	31	NM_010331	14731	Mm.5903	NM_010331	ENSMUSG00000022561	Gpaa1	C80044|mGAA1	GPI anchor attachment protein 1	protein-coding	0.110000	0.671642	
mm_152591.1	chr19	11604731	11604931	-	1	NA	NA	NA	-27	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.005000	0.452736	
mm_104198.1	chr11	87980849	87981049	-	1	NA	NA	NA	5636	NM_001168472	68097	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	0.010000	0.611940	
mm_71498.1	chr8	46793412	46793612	+	1	NA	NA	NA	53767	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.055000	0.542289	
mm_136168.1	chr16	88563083	88563283	-	1	NA	NA	NA	0	NM_018778	54420	Mm.25836	NM_018778	ENSMUSG00000050520	Cldn8	AI648025	claudin 8	protein-coding	0.005000	0.522388	
mm_5627.1	chr1	40397388	40397588	-	1	NA	NA	NA	-32082	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.010000	0.472637	
mm_166511.1	chr6	11341213	11341413	+	1	NA	NA	NA	-366935	NR_033776	57866	Mm.4397	NR_033776		AA545190	-	EST AA545190	ncRNA	0.005000	0.402985	
mm_141980.1	chr17	35164520	35164720	-	1	NA	NA	NA	257	NM_001199044	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.125000	0.805970	
mm_150803.1	chr19	44333274	44333474	+	1	NA	NA	NA	48	NM_183216	329065	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0.030000	0.537313	-81(CCCTTTAAATCC,+,0.00)
mm_114049.1	chr13	54302493	54302693	+	1	NA	NA	NA	-68756	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.035000	0.636816	
mm_32033.1	chr4	95579381	95579581	+	1	NA	NA	NA	60	NM_029347	75578	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.005000	0.452736	
mm_77230.1	chr8	115704070	115704270	-	1	NA	NA	NA	2724	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.000000	0.228856	
mm_18430.1	chr2	60781805	60782005	-	1	NA	NA	NA	-59302	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.020000	0.472637	
mm_107177.1	chr12	24973710	24973910	+	1	NA	NA	NA	-1122	NM_001081378	77480	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	0.015000	0.547264	
mm_160200.1	chr7	80309333	80309533	+	1	NA	NA	NA	14982	NM_001285998	233406	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	0.020000	0.427861	3(ATCTTTTAAAAG,-,0.00),5(CTTTTAAAAGAA,+,0.00)
mm_33695.1	chr4	133553282	133553482	+	1	NA	NA	NA	6	NM_011850	23957	Mm.346759	NM_011850	ENSMUSG00000037583	Nr0b2	SHP|SHP-1|Shp1	nuclear receptor subfamily 0, group B, member 2	protein-coding	0.020000	0.527363	
mm_23605.1	chr3	65339441	65339641	+	1	NA	NA	NA	9888	NR_040390	319798	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	0.015000	0.492537	
mm_54548.1	chr6	36810013	36810213	-	1	NA	NA	NA	1248	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.025000	0.557214	
mm_47547.1	chr5	124351104	124351304	-	1	NA	NA	NA	3424	NM_013812	13445	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0.025000	0.587065	
mm_118376.1	chr13	117024056	117024256	-	1	NA	NA	NA	1360	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.030000	0.417910	
mm_142437.1	chr17	45570971	45571171	-	1	NA	NA	NA	2190	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.045000	0.532338	
mm_27126.1	chr3	32340473	32340673	-	1	NA	NA	NA	-24916	NR_027966	67576	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	0.005000	0.373134	
mm_155482.1	chrX	73675444	73675644	+	1	NA	NA	NA	2411	NM_001142809	102857	Mm.274553	NM_133987	ENSMUSG00000019558	Slc6a8	AA589632|CRT|CRTR|CT1|CTR5|Creat	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	protein-coding	0.005000	0.577114	
mm_104170.1	chr11	87566492	87566692	-	1	NA	NA	NA	-11797	NM_001284398	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding	0.005000	0.383085	-61(TGTCATAAAAGG,-,0.00)
mm_44503.1	chr5	23871263	23871463	-	1	NA	NA	NA	19130	NR_028536	100217436		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	0.005000	0.442786	
mm_93959.1	chr10	127286157	127286357	-	1	NA	NA	NA	2761	NM_001347171	110962	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.010000	0.626866	
mm_100190.1	chr11	116750963	116751163	+	1	NA	NA	NA	-1104	NR_003364	193217	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	0.010000	0.487562	
mm_110348.1	chr12	36627304	36627504	-	1	NA	NA	NA	-188801	NR_039558	100628578		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA	0.000000	0.417910	
mm_122581.1	chr14	50836292	50836492	-	1	NA	NA	NA	28446	NM_009632	11546	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0.020000	0.512438	
mm_71877.1	chr8	69797698	69797898	+	1	NA	NA	NA	6635	NM_133224	170759	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	0.035000	0.592040	
mm_117927.1	chr13	99434162	99434362	-	1	NA	NA	NA	-21436	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.020000	0.442786	
mm_169378.1	chr14	37261052	37261252	-	1	NA	NA	NA	-125830	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.045000	0.547264	
mm_86529.1	chr10	7832247	7832447	+	1	NA	NA	NA	-123	NM_172785	237256	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	0.035000	0.547264	
mm_65002.1	chr7	17027787	17027987	-	1	NA	NA	NA	27	NM_011155	19060	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	0.140000	0.741294	
mm_76804.1	chr8	104309977	104310177	-	1	NA	NA	NA	68	NM_181990	100504164	Mm.443302	NM_181990	ENSMUSG00000110430	Cmtm1	CHLFH1a|CKLFH|CKLFH1|Cklfsf1	CKLF-like MARVEL transmembrane domain containing 1	protein-coding	0.040000	0.597015	
mm_128486.1	chr15	50890031	50890231	-	1	NA	NA	NA	-90	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.150000	0.711443	-6(GTCTCTTTAAGG,-,0.00)
mm_102261.1	chr11	55336400	55336600	-	1	NA	NA	NA	-24243	NM_001029988	245827	Mm.339363	NM_001029988	ENSMUSG00000055333	Fat2	EMI2|Fath2|Gm523|mKIAA0811	FAT atypical cadherin 2	protein-coding	0.015000	0.592040	
mm_110964.1	chr12	76822387	76822587	-	1	NA	NA	NA	37	NM_134050	104886	Mm.172847	NM_134050	ENSMUSG00000021062	Rab15	2310012G06Rik|AI840042	RAB15, member RAS oncogene family	protein-coding	0.160000	0.815920	
mm_126510.1	chr15	81802679	81802879	+	1	NA	NA	NA	106	NM_153484	21685	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.015000	0.621891	
mm_121978.1	chr14	25850470	25850670	-	1	NA	NA	NA	8415	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.005000	0.447761	
mm_84576.1	chr9	69295696	69295896	-	1	NA	NA	NA	5955	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.030000	0.492537	
mm_41936.1	chr5	105701313	105701513	+	1	NA	NA	NA	603	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.025000	0.358209	
mm_129331.1	chr15	77813059	77813259	-	1	NA	NA	NA	29016	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.015000	0.527363	
mm_94892.1	chr11	28853124	28853324	+	1	NA	NA	NA	19	NM_146015	216616	Mm.44176	NM_146015	ENSMUSG00000020467	Efemp1	-	epidermal growth factor-containing fibulin-like extracellular matrix protein 1	protein-coding	0.065000	0.681592	
mm_42295.1	chr5	114444233	114444433	+	1	NA	NA	NA	64	NM_023556	17855	Mm.28088	NM_023556	ENSMUSG00000041939	Mvk	2310010A05Rik|AI256848|AI414037|MK	mevalonate kinase	protein-coding	0.080000	0.686567	
mm_67124.1	chr7	70361704	70361904	-	1	NA	NA	NA	-1211	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.125000	0.651741	-33(TGCCTTATAAGG,-,0.00),-31(CCTTATAAGGCG,+,0.00),31(CACTATATAGAG,-,0.00)
mm_31484.1	chr4	52465835	52466035	+	1	NA	NA	NA	26714	NM_001301412	14211	Mm.2999	NM_008017	ENSMUSG00000028312	Smc2	5730502P04Rik|AI255214|AW545314|CAP-E|CAPE|Fin16|SMC-2|Smc2l1	structural maintenance of chromosomes 2	protein-coding	0.015000	0.378109	
mm_53.1	chr1	6528000	6528200	+	1	NA	NA	NA	40869	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.323383	
mm_46652.1	chr5	108660661	108660861	-	1	NA	NA	NA	8	NM_199011	110524	Mm.260921	NM_199011	ENSMUSG00000004815	Dgkq	110kDa|DAGK|DAGK7|Dagk4|Dgkd	diacylglycerol kinase, theta	protein-coding	0.110000	0.726368	
mm_50421.1	chr6	48770952	48771152	+	1	NA	NA	NA	-201	NM_031247	83408	Mm.333050	NM_031247	ENSMUSG00000039264	Gimap3	2010110D23Rik|Gimap5|Ian4	GTPase, IMAP family member 3	protein-coding	0.005000	0.487562	-42(AAGTCTAAAAGC,-,0.00)
mm_160697.1	chr10	40302085	40302285	-	1	NA	NA	NA	1	NM_007444	100041585	Mm.476925	NM_007444	ENSMUSG00000063953	Amd2	AdoMetDC|Amd1|Amd3|ENSMUSG00000063953	S-adenosylmethionine decarboxylase 2	protein-coding	0.070000	0.572139	-35(GCTTATATAAGG,+,0.00),-35(GCTTATATAAGG,-,0.00)
mm_57401.1	chr6	124864036	124864236	-	1	NA	NA	NA	-219	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.040000	0.582090	
mm_99550.1	chr11	103425155	103425355	+	1	NA	NA	NA	-12591	NM_183034	353047	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.025000	0.552239	-75(GCCTTTAGAGGC,+,0.00)
mm_131455.1	chr16	16870862	16871062	+	1	NA	NA	NA	226	NM_011624	21976	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding	0.110000	0.706468	
mm_58734.1	chr7	13030035	13030235	+	1	NA	NA	NA	4642	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.010000	0.512438	
mm_171210.1	chr3	5860358	5860558	+	1	NA	NA	NA	-284210	NM_001163305	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.055000	0.482587	
mm_136767.1	chr17	8924019	8924219	+	1	NA	NA	NA	-64214	NM_025851	66931	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	0.015000	0.527363	
mm_52360.1	chr6	112489012	112489212	+	1	NA	NA	NA	696	NM_001081147	18430	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding	0.100000	0.641791	
mm_117558.1	chr13	85127304	85127504	-	1	NA	NA	NA	-61981	NM_001347587	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0.030000	0.407960	
mm_33333.1	chr4	129136831	129137031	+	1	NA	NA	NA	-68	NM_027402	384061	Mm.44075	NM_027402	ENSMUSG00000001334	Fndc5	1500001L03Rik|AI836596|C87088|PeP|Pxp	fibronectin type III domain containing 5	protein-coding	0.195000	0.865672	
mm_63446.1	chr7	127490202	127490402	+	1	NA	NA	NA	1051	NR_106027	102465642		NR_106027	ENSMUSG00000098267	Mir7060	Gm27515|mmu-mir-7060	microRNA 7060	ncRNA	0.015000	0.606965	
mm_42305.1	chr5	114775847	114776047	+	1	NA	NA	NA	807	NM_026718	68420	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	0.005000	0.402985	
mm_109800.1	chr12	3309513	3309713	-	1	NA	NA	NA	356	NM_016676	19325	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.130000	0.731343	
mm_111466.1	chr12	98574449	98574649	-	1	NA	NA	NA	163	NM_001316666	72258	Mm.196158	NM_029911	ENSMUSG00000033854	Kcnk10	1700024D23Rik|3010005K24Rik|Trek2	potassium channel, subfamily K, member 10	protein-coding	0.080000	0.621891	
mm_116163.1	chr13	30749319	30749519	-	1	NA	NA	NA	186	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.035000	0.597015	
mm_162774.1	chr10	68136721	68136921	-	1	NA	NA	NA	141905	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.020000	0.582090	
mm_27603.1	chr3	59153487	59153687	-	1	NA	NA	NA	41	NR_045641	320463	Mm.484506	NR_045641	ENSMUSG00000036381	F630111L10Rik	-	RIKEN cDNA F630111L10 gene	ncRNA	0.020000	0.497512	
mm_19444.1	chr2	91982619	91982819	-	1	NA	NA	NA	-19156	NM_138306	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.025000	0.542289	
mm_16288.1	chr2	174110998	174111198	+	1	NA	NA	NA	747	NM_213733	228961	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	0.055000	0.621891	
mm_157421.1	chrX	38564211	38564411	-	1	NA	NA	NA	11885	NM_028288	72584	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	0.030000	0.582090	
mm_48717.1	chr5	147322161	147322361	-	1	NA	NA	NA	179	NM_001039678	231903	Mm.291286	NM_001039678	ENSMUSG00000075543	Urad	EG231903|Prhoxnb	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase	protein-coding	0.020000	0.482587	
mm_133028.1	chr16	57191272	57191472	+	1	NA	NA	NA	-24040	NM_023175	52633	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.035000	0.532338	
mm_97079.1	chr11	73009674	73009874	+	1	NA	NA	NA	-9234	NM_018883	55984	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	0.020000	0.587065	
mm_154242.1	chr19	60766277	60766477	-	1	NA	NA	NA	8008	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.010000	0.427861	
mm_171915.1	chr5	5782049	5782249	-	1	NA	NA	NA	-32832	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.010000	0.492537	
mm_113634.1	chr13	42051759	42051959	+	1	NA	NA	NA	-162	NM_007772	110521	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.160000	0.875622	
mm_45213.1	chr5	52994072	52994272	-	1	NA	NA	NA	-1880	NR_040413	75954	Mm.258937	NR_040413	ENSMUSG00000106352	5033403H07Rik	-	RIKEN cDNA 5033403H07 gene	ncRNA	0.035000	0.507463	
mm_104235.1	chr11	88702192	88702392	-	1	NA	NA	NA	15937	NM_054043	76626	Mm.400451	NM_054043	ENSMUSG00000069769	Msi2	1700105C15Rik|AI451722|AI563628|AW489193|Msi2h	musashi RNA-binding protein 2	protein-coding	0.015000	0.442786	
mm_153779.1	chr19	45783391	45783591	-	1	NA	NA	NA	-200	NM_023799	76055	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	2810009A20Rik|4833427O07Rik|5830447M11Rik|AA408215|Hy5|Ncoat|OGA|mKIAA0679	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0.110000	0.716418	
mm_24819.1	chr3	95645498	95645698	+	1	NA	NA	NA	-13123	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.025000	0.512438	
mm_125416.1	chr15	41794387	41794587	+	1	NA	NA	NA	4972	NM_130885	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.000000	0.348259	
mm_129013.1	chr15	74923453	74923653	-	1	NA	NA	NA	-31498	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.015000	0.532338	
mm_77939.1	chr9	7355318	7355518	+	1	NA	NA	NA	8044	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.412935	
mm_73044.1	chr8	94329540	94329740	+	1	NA	NA	NA	432	NM_001205311	20497	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.015000	0.477612	
mm_6963.1	chr1	86111879	86112079	-	1	NA	NA	NA	-9	NM_008311	15559	Mm.439747	NM_008311	ENSMUSG00000026228	Htr2b	5-HT2B|AJ012488|AV377389	5-hydroxytryptamine (serotonin) receptor 2B	protein-coding	0.020000	0.507463	
mm_52231.1	chr6	103691883	103692083	+	1	NA	NA	NA	181107	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.000000	0.293532	
mm_16102.1	chr2	169632620	169632820	+	1	NA	NA	NA	-926	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.035000	0.537313	
mm_149866.1	chr19	25147251	25147451	+	1	NA	NA	NA	-89851	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.035000	0.472637	
mm_11210.1	chr2	29619659	29619859	+	1	NA	NA	NA	39	NM_001039086	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.185000	0.840796	
mm_132145.1	chr16	32099719	32099919	+	1	NA	NA	NA	17	NM_025892	66994	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0.095000	0.711443	
mm_110606.1	chr12	56536570	56536770	-	1	NA	NA	NA	238	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.050000	0.532338	
mm_92977.1	chr10	86691627	86691827	-	1	NA	NA	NA	6200	NR_015572	66263	Mm.392261	NR_015572		1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	0.005000	0.457711	
mm_159094.1	chr2	33640537	33640737	-	1	NA	NA	NA	-126	NM_010725	16917	Mm.39825	NM_010725	ENSMUSG00000038765	Lmx1b	Icst|LMX1.1|LMX1.2	LIM homeobox transcription factor 1 beta	protein-coding	0.160000	0.796020	
mm_151743.1	chr19	5001702	5001902	-	1	NA	NA	NA	-11831	NM_153553	225872	Mm.287867	NM_153553	ENSMUSG00000045903	Npas4	LE-PAS|Nxf	neuronal PAS domain protein 4	protein-coding	0.080000	0.656716	-10(GCCTTTTTAAGG,-,0.00),-8(CTTTTTAAGGCA,+,0.00)
mm_113164.1	chr13	24806830	24807030	+	1	NA	NA	NA	5273	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.005000	0.263682	
mm_162663.1	chr10	5550760	5550960	-	1	NA	NA	NA	-168	NM_001347732	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.035000	0.681592	
mm_54417.1	chr6	32896928	32897128	-	1	NA	NA	NA	163124	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0.010000	0.442786	
mm_134559.1	chr16	20301698	20301898	-	1	NA	NA	NA	564	NM_001005767	381038	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	0.035000	0.447761	80(GTCTTTATAAAC,-,0.00)
mm_152174.1	chr19	7341756	7341956	-	1	NA	NA	NA	4	NM_001080389	13728	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.105000	0.626866	
mm_31062.1	chr4	41314846	41315046	+	1	NA	NA	NA	-45	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.080000	0.626866	
mm_71602.1	chr8	55059058	55059258	+	1	NA	NA	NA	104430	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.005000	0.328358	
mm_70942.1	chr8	26119400	26119600	+	1	NA	NA	NA	120	NM_029965	77733	Mm.291906	NM_029965	ENSMUSG00000013878	Rnf170	6720407G21Rik|AI481227	ring finger protein 170	protein-coding	0.120000	0.686567	
mm_12818.1	chr2	80316734	80316934	+	1	NA	NA	NA	1368	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.010000	0.457711	
mm_19894.1	chr2	114051910	114052110	-	1	NA	NA	NA	865	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.055000	0.611940	
mm_53264.1	chr6	128362664	128362864	+	1	NA	NA	NA	58	NM_001326583	72440	Mm.143908	NM_197981	ENSMUSG00000048668	Rhno1	2510047L19Rik|5930416I19Rik	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding	0.145000	0.786070	
mm_135044.1	chr16	33056309	33056509	-	1	NA	NA	NA	-44	NM_001130485	57808	Mm.19355	NM_021338	ENSMUSG00000060636	Rpl35a	2810431L15Rik|Rpl35	ribosomal protein L35A	protein-coding	0.085000	0.611940	
mm_36410.1	chr4	78060316	78060516	-	1	NA	NA	NA	151479	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.005000	0.353234	
mm_127655.1	chr15	102498445	102498645	+	1	NA	NA	NA	18459	NM_001163643	26404	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0.010000	0.432836	
mm_125431.1	chr15	44428024	44428224	+	1	NA	NA	NA	13	NM_175009	223527	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	enhancer of yellow 2 homolog (Drosophila)	protein-coding	0.080000	0.601990	
mm_116619.1	chr13	48878563	48878763	-	1	NA	NA	NA	-7778	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.100000	0.666667	-30(GCTTAAAGAGCC,+,0.00)
mm_64209.1	chr7	141475361	141475561	+	1	NA	NA	NA	225	NM_053082	64540	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.135000	0.711443	
mm_3653.1	chr1	153093870	153094070	+	1	NA	NA	NA	92477	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.010000	0.557214	
mm_63623.1	chr7	128266243	128266443	+	1	NA	NA	NA	646	NM_133254	246787	Mm.38870	NM_133254	ENSMUSG00000030781	Slc5a2	Sglt2	solute carrier family 5 (sodium/glucose cotransporter), member 2	protein-coding	0.010000	0.542289	
mm_135004.1	chr16	32179582	32179782	-	1	NA	NA	NA	-118	NM_001033539	328660	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.000000	0.447761	
mm_38168.1	chr4	135216976	135217176	-	1	NA	NA	NA	55684	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.050000	0.502488	
mm_43909.1	chr5	144255998	144256198	+	1	NA	NA	NA	873	NM_018772	55950	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.030000	0.587065	
mm_23173.1	chr3	40783031	40783231	+	1	NA	NA	NA	-16820	NM_173169	20873	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo-like kinase 4	protein-coding	0.005000	0.422886	
mm_20307.1	chr2	127208159	127208359	-	1	NA	NA	NA	21	NM_198630	329509	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding	0.075000	0.557214	
mm_79981.1	chr9	66946000	66946200	+	1	NA	NA	NA	24	NM_026467	67941	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	0.115000	0.681592	
mm_39412.1	chr5	14677351	14677551	+	1	NA	NA	NA	162533	NM_001110796	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.010000	0.417910	
mm_119155.1	chr14	31575398	31575598	+	1	NA	NA	NA	1885	NM_009937	382864	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.020000	0.492537	
mm_54900.1	chr6	47454960	47455160	-	1	NA	NA	NA	736	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.125000	0.726368	
mm_8230.1	chr1	138175535	138175735	-	1	NA	NA	NA	-330	NM_001268286	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.015000	0.417910	
mm_7138.1	chr1	91062421	91062621	-	1	NA	NA	NA	9077	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.010000	0.527363	-17(GACTCTAAAAAC,-,0.00)
mm_2967.1	chr1	133046053	133046253	+	1	NA	NA	NA	141	NM_001099276	240752	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphoinositide-3-kinase, class 2, beta polypeptide	protein-coding	0.140000	0.751244	
mm_116579.1	chr13	47105640	47105840	-	1	NA	NA	NA	481	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.130000	0.746269	
mm_47264.1	chr5	121836728	121836928	-	1	NA	NA	NA	31	NM_001306128	16923	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.135000	0.771144	
mm_153570.1	chr19	42752388	42752588	-	1	NA	NA	NA	287	NM_029011	74580	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	0.035000	0.616915	
mm_70936.1	chr8	25849563	25849763	+	1	NA	NA	NA	40	NM_008432	16532	Mm.289679	NM_008432	ENSMUSG00000031576	Kcnu1	Kcnma3|Slo3|mSlo3	potassium channel, subfamily U, member 1	protein-coding	0.030000	0.457711	
mm_168550.1	chr11	63846845	63847045	-	1	NA	NA	NA	75339	NM_018805	54710	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0.055000	0.527363	
mm_127121.1	chr15	98093576	98093776	+	1	NA	NA	NA	-107	NM_144851	223870	Mm.384023	NM_144851	ENSMUSG00000033075	Senp1	2310046A20Rik|D15Ertd528e|E330036L07Rik|suPr-2	SUMO1/sentrin specific peptidase 1	protein-coding	0.055000	0.512438	
mm_109310.1	chr12	109560754	109560954	+	1	NA	NA	NA	-2838	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.020000	0.388060	
mm_55240.1	chr6	52313404	52313604	-	1	NA	NA	NA	6	NM_007966	14028	Mm.389754	NM_007966	ENSMUSG00000005503	Evx1	Evx-1	even-skipped homeobox 1	protein-coding	0.060000	0.552239	
mm_1771.1	chr1	77951336	77951536	+	1	NA	NA	NA	245700	NM_008781	18505	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	0.025000	0.378109	88(GACTATTAAAAG,-,0.00)
mm_152651.1	chr19	12765331	12765531	-	1	NA	NA	NA	201	NM_170786	12803	Mm.290924	NM_053007	ENSMUSG00000079415	Cntf	AI429687	ciliary neurotrophic factor	protein-coding	0.020000	0.512438	
mm_68456.1	chr7	110122797	110122997	-	1	NA	NA	NA	838	NM_009516	22390	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.110000	0.691542	-72(TTTTTTAAAGGC,+,0.00),-71(TTTTTAAAGGCC,+,0.00)
mm_23628.1	chr3	66219818	66220018	+	1	NA	NA	NA	31	NM_008987	19288	Mm.276776	NM_008987	ENSMUSG00000027832	Ptx3	AI607804|TSG-14	pentraxin related gene	protein-coding	0.040000	0.557214	
mm_160520.1	chr9	31163243	31163443	-	1	NA	NA	NA	-31544	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.005000	0.482587	
mm_164223.1	chr15	85354151	85354351	-	1	NA	NA	NA	17870	NM_016843	54138	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.025000	0.532338	
mm_161217.1	chr13	67278356	67278556	-	1	NA	NA	NA	-138	NR_033540	100038627	Mm.387089	NR_033540		F630042J09Rik	ENSMUSG00000074823	RIKEN cDNA F630042J09 gene	ncRNA	0.025000	0.527363	
mm_166121.1	chr4	152065406	152065606	+	1	NA	NA	NA	-21357	NR_104381	269608	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	0.000000	0.427861	
mm_134922.1	chr16	30388732	30388932	-	1	NA	NA	NA	-302	NM_001128096	224088	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0.145000	0.786070	
mm_112749.1	chr13	19341835	19342035	+	1	NA	NA	NA	53878	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.402985	
mm_39198.1	chr4	156016504	156016704	-	1	NA	NA	NA	2909	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.005000	0.532338	
mm_125263.1	chr15	35371446	35371646	+	1	NA	NA	NA	0	NM_177151	666173	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0.155000	0.721393	
mm_95753.1	chr11	54902791	54902991	+	1	NA	NA	NA	37	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.070000	0.626866	
mm_48002.1	chr5	136161201	136161401	-	1	NA	NA	NA	9355	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.020000	0.532338	
mm_128069.1	chr15	27518664	27518864	-	1	NA	NA	NA	52087	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.005000	0.467662	
mm_96450.1	chr11	67532983	67533183	+	1	NA	NA	NA	85	NM_008088	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.010000	0.532338	-33(TGGTATTTAAGC,-,0.00)
mm_147474.1	chr18	46863939	46864139	-	1	NA	NA	NA	14000	NM_029008	74574	Mm.26379	NM_029008	ENSMUSG00000024481	Lvrn	4833403I15Rik|APQ|Aqpep	laeverin	protein-coding	0.005000	0.462687	
mm_88200.1	chr10	70110182	70110382	+	1	NA	NA	NA	13161	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.015000	0.582090	
mm_38440.1	chr4	139833430	139833630	-	1	NA	NA	NA	-562	NM_011039	18509	Mm.218760	NM_011039	ENSMUSG00000028736	Pax7	Pax-7	paired box 7	protein-coding	0.070000	0.631841	
mm_112194.1	chr12	113425587	113425787	-	1	NA	NA	NA	-63878	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.015000	0.457711	
mm_158207.1	chrX	105855856	105856056	-	1	NA	NA	NA	73416	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.010000	0.368159	-86(TTATTTAAAAGC,-,0.00)
mm_47908.1	chr5	134946163	134946363	-	1	NA	NA	NA	671	NM_009903	12740	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	0.065000	0.621891	
mm_15835.1	chr2	164687232	164687432	+	1	NA	NA	NA	2225	NM_001012704	408190	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	0.025000	0.452736	8(CCTTTAATACGA,+,0.00)
mm_85880.1	chr9	110990485	110990685	-	1	NA	NA	NA	-872	NM_153100	235636	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	0.010000	0.457711	
mm_109841.1	chr12	4477067	4477267	-	1	NA	NA	NA	15	NM_010881	17977	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0.170000	0.800995	
mm_43962.1	chr5	145260078	145260278	+	1	NA	NA	NA	-23165	NM_001081431	666311	Mm.260773	NM_001081431	ENSMUSG00000070420	Zscan25	EG666311|Zfp498	zinc finger and SCAN domain containing 25	protein-coding	0.000000	0.432836	
mm_120489.1	chr14	65979652	65979852	+	1	NA	NA	NA	11269	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.035000	0.587065	
mm_84096.1	chr9	58249535	58249735	-	1	NA	NA	NA	151	NM_178087	18854	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	0.025000	0.557214	
mm_90965.1	chr10	13375266	13375466	-	1	NA	NA	NA	13604	NM_001195066	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.010000	0.462687	
mm_170785.1	chr2	174980875	174981075	-	1	NA	NA	NA	86794	NM_001085546	664987		NM_001085546	ENSMUSG00000078905	Gm14393	OTTMUSG00000016546	predicted gene 14393	protein-coding	0.015000	0.482587	
mm_59621.1	chr7	28153321	28153521	+	1	NA	NA	NA	-16327	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.010000	0.522388	
mm_115280.1	chr13	111807184	111807384	+	1	NA	NA	NA	1699	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.010000	0.482587	
mm_58717.1	chr7	13016754	13016954	+	1	NA	NA	NA	-7054	NM_001024699	232879	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	0.000000	0.417910	
mm_58230.1	chr6	144781848	144782048	-	1	NA	NA	NA	109080	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA	0.070000	0.651741	
mm_68470.1	chr7	110648725	110648925	-	1	NA	NA	NA	21156	NM_009627	11535	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.015000	0.606965	
mm_58252.1	chr6	145075846	145076046	-	1	NA	NA	NA	211	NM_007532	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.075000	0.606965	
mm_134080.1	chr16	8721598	8721798	-	1	NA	NA	NA	16644	NM_001003918	252870	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.020000	0.467662	
mm_104053.1	chr11	86358203	86358403	-	1	NA	NA	NA	-778	NM_001080931	327987	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0.075000	0.636816	16(CGCCATTAAAGC,-,0.00)
mm_39305.1	chr5	7960174	7960374	+	1	NA	NA	NA	-198	NM_054098	117167	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0.035000	0.552239	-20(CCTTTTATACCC,+,0.00)
mm_172018.1	chr6	113378092	113378292	+	1	NA	NA	NA	79	NM_001170485	68089	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	0.080000	0.671642	
mm_124102.1	chr14	79300942	79301142	-	1	NA	NA	NA	593	NM_025427	66214	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	0.055000	0.592040	
mm_118877.1	chr14	25868697	25868897	+	1	NA	NA	NA	26642	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.010000	0.621891	
mm_137050.1	chr17	17917765	17917965	+	1	NA	NA	NA	30041	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.000000	0.373134	
mm_77809.1	chr9	3036300	3036500	+	1	NA	NA	NA	2343	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.358209	
mm_17664.1	chr2	32083601	32083801	-	1	NA	NA	NA	4	NM_175511	241303	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.120000	0.736318	
mm_1191.1	chr1	62703334	62703534	+	1	NA	NA	NA	117	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.095000	0.706468	-78(GGCCTGAAAAGG,-,0.00)
mm_107013.1	chr12	12262048	12262248	+	1	NA	NA	NA	9	NM_001146119	76820	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.120000	0.766169	
mm_72533.1	chr8	83995377	83995577	+	1	NA	NA	NA	-2195	NM_001081415	666704	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.010000	0.472637	
mm_141606.1	chr17	32788191	32788391	-	1	NA	NA	NA	-4	NM_172458	208292	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	0.035000	0.527363	
mm_171075.1	chr3	120105508	120105708	+	1	NA	NA	NA	-322220	NM_019550	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.035000	0.582090	
mm_40136.1	chr5	35046388	35046588	+	1	NA	NA	NA	4979	NM_019447	54426	Mm.27369	NM_019447	ENSMUSG00000029102	Hgfac	HGFA	hepatocyte growth factor activator	protein-coding	0.015000	0.567164	
mm_32308.1	chr4	103170866	103171066	+	1	NA	NA	NA	43918	NM_177732	242585	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.015000	0.383085	
mm_5253.1	chr1	16619342	16619542	-	1	NA	NA	NA	-104	NM_001271017	66799	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0.105000	0.711443	
mm_33753.1	chr4	134324804	134325004	+	1	NA	NA	NA	9784	NM_001039048	433766	Mm.331961	NM_001039048	ENSMUSG00000028834	Trim63	MuRF1|RF1|Rnf28	tripartite motif-containing 63	protein-coding	0.020000	0.537313	
mm_151468.1	chr19	58670347	58670547	+	1	NA	NA	NA	82	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.030000	0.487562	
mm_169385.1	chr14	41586627	41586827	+	1	NA	NA	NA	185677	NM_001244671	100042055	Mm.429109	NM_001244671	ENSMUSG00000095226	Gm10377	ENSMUSG00000072606	predicted gene 10377	protein-coding	0.005000	0.467662	
mm_62177.1	chr7	97400073	97400273	+	1	NA	NA	NA	170	NM_024220	68197	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding	0.085000	0.601990	
mm_117613.1	chr13	91388006	91388206	-	1	NA	NA	NA	-21	NR_045161	320297	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0.025000	0.482587	
mm_159569.1	chr4	112616408	112616608	+	1	NA	NA	NA	2768	NM_001285963	329919	Mm.259806	NM_177865	ENSMUSG00000034359	Skint2	A430070M19|B7S3|OTTMUSG00000008540|Skint-2	selection and upkeep of intraepithelial T cells 2	protein-coding	0.005000	0.412935	
mm_126339.1	chr15	79900180	79900380	+	1	NA	NA	NA	5257	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.005000	0.572139	
mm_66712.1	chr7	46030194	46030394	-	1	NA	NA	NA	-8	NM_018795	27421	Mm.63514	NM_018795	ENSMUSG00000030834	Abcc6	Abcc1b|DCC|Dyscalc1|Mrp6|dyscalc	ATP-binding cassette, sub-family C (CFTR/MRP), member 6	protein-coding	0.035000	0.631841	
mm_66586.1	chr7	45395093	45395293	-	1	NA	NA	NA	549	NM_009224	20637	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	0.030000	0.447761	
mm_121527.1	chr14	122171186	122171386	+	1	NA	NA	NA	-10408	NM_029556	69634	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	0.015000	0.527363	
mm_120208.1	chr14	62292386	62292586	+	1	NA	NA	NA	493	NM_173419	239133	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.015000	0.592040	
mm_53174.1	chr6	125349637	125349837	+	1	NA	NA	NA	14	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.040000	0.587065	
mm_84695.1	chr9	72403547	72403747	-	1	NA	NA	NA	-34882	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.020000	0.497512	
mm_94570.1	chr11	11687652	11687852	+	1	NA	NA	NA	1827	NM_001025597	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.015000	0.388060	
mm_100470.1	chr11	119996893	119997093	+	1	NA	NA	NA	-17774	NR_037225	100526518		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0.065000	0.597015	
mm_14102.1	chr2	125256340	125256540	+	1	NA	NA	NA	8925	NM_023595	110074	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0.010000	0.407960	-36(TGGTTTAAAAGG,-,0.00)
mm_118008.1	chr13	100650933	100651133	-	1	NA	NA	NA	28	NM_001044371	19356	Mm.248489	NM_011233	ENSMUSG00000021635	Rad17	MmRad24	RAD17 checkpoint clamp loader component	protein-coding	0.115000	0.706468	
mm_46376.1	chr5	103795088	103795288	-	1	NA	NA	NA	40615	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.015000	0.507463	
mm_18379.1	chr2	60010465	60010665	-	1	NA	NA	NA	115175	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.015000	0.393035	
mm_8446.1	chr1	152880171	152880371	-	1	NA	NA	NA	-2103	NM_001160257	226517	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.005000	0.303483	
mm_4182.1	chr1	171159968	171160168	+	1	NA	NA	NA	4550	NM_001315500	17528	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0.065000	0.601990	
mm_71267.1	chr8	40918926	40919126	+	1	NA	NA	NA	-7207	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.015000	0.477612	
mm_1745.1	chr1	75479461	75479661	+	1	NA	NA	NA	29	NM_177056	319998	Mm.44401	NM_177056	ENSMUSG00000051703	Tmem198	A230078I05Rik|Tmem198-1|Tmem198a	transmembrane protein 198	protein-coding	0.070000	0.696517	
mm_31590.1	chr4	57849058	57849258	+	1	NA	NA	NA	3910	NM_001035532	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.000000	0.412935	-73(GCCTATATGGGA,+,0.00),-6(TTTTTTAAAGCT,+,0.00)
mm_54533.1	chr6	36715471	36715671	-	1	NA	NA	NA	95790	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.000000	0.288557	-75(CCATTTATACCT,+,0.00)
mm_157528.1	chrX	51017888	51018088	-	1	NA	NA	NA	30	NM_172413	72065	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	0.055000	0.616915	
mm_122400.1	chr14	41004175	41004375	-	1	NA	NA	NA	2645	NM_001316739	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.015000	0.567164	
mm_17983.1	chr2	37801119	37801319	-	1	NA	NA	NA	24970	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.005000	0.572139	
mm_5440.1	chr1	34842913	34843113	-	1	NA	NA	NA	37	NM_001160235	214469	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.195000	0.810945	
mm_78793.1	chr9	44046512	44046712	+	1	NA	NA	NA	3228	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.020000	0.587065	
mm_23057.1	chr3	35762198	35762398	+	1	NA	NA	NA	8160	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.005000	0.298507	73(TTCCATATAAAG,-,0.00),75(CCATATAAAGTA,+,0.00)
mm_95616.1	chr11	53519794	53519994	+	1	NA	NA	NA	158	NM_001347496	20362	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0.155000	0.796020	
mm_11194.1	chr2	29122708	29122908	+	1	NA	NA	NA	-2184	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.015000	0.502488	
mm_102831.1	chr11	69098650	69098850	-	1	NA	NA	NA	-206	NM_011065	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.020000	0.567164	81(CCTTTTCAGGGA,+,0.00)
mm_171044.1	chr2	98663635	98663835	-	1	NA	NA	NA	1196078	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.015000	0.348259	
mm_87376.1	chr10	44468744	44468944	+	1	NA	NA	NA	-10096	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.010000	0.527363	
mm_87827.1	chr10	60357911	60358111	+	1	NA	NA	NA	11160	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.045000	0.592040	
mm_147200.1	chr18	37877666	37877866	-	1	NA	NA	NA	-23106	NR_105945	102465592		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.005000	0.447761	67(GTCTTTAGAGAC,+,0.00)
mm_155955.1	chrX	105120254	105120454	+	1	NA	NA	NA	-24	NM_053201	107528	Mm.24341	NM_053201	ENSMUSG00000031227	Magee1	AI847422|DAMAGE|mMage-e1	melanoma antigen, family E, 1	protein-coding	0.075000	0.621891	
mm_104395.1	chr11	94498100	94498300	-	1	NA	NA	NA	1774	NM_027984	71889	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	0.020000	0.567164	
mm_120827.1	chr14	75174868	75175068	+	1	NA	NA	NA	38543	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.005000	0.527363	
mm_35887.1	chr4	49542496	49542696	-	1	NA	NA	NA	6950	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.020000	0.487562	
mm_62755.1	chr7	112023418	112023618	+	1	NA	NA	NA	12	NM_177249	74996	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	0.140000	0.731343	
mm_139063.1	chr17	46520670	46520870	+	1	NA	NA	NA	23981	NM_207161	381101	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	0.045000	0.631841	
mm_139196.1	chr17	47629829	47630029	+	1	NA	NA	NA	-761	NM_198421	224836	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	0.155000	0.776119	
mm_50926.1	chr6	57636527	57636727	+	1	NA	NA	NA	55451	NM_025574	66459	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	0.005000	0.333333	
mm_72820.1	chr8	88137813	88138013	+	1	NA	NA	NA	28	NM_172757	234549	Mm.36291	NM_172757	ENSMUSG00000031657	Heatr3	C030036P15Rik	HEAT repeat containing 3	protein-coding	0.085000	0.646766	
mm_22330.1	chr2	180701060	180701260	-	1	NA	NA	NA	942	NM_011805	23856	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.020000	0.507463	
mm_164694.1	chr17	48314583	48314783	+	1	NA	NA	NA	-1479	NM_177083	320148	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.005000	0.542289	
mm_114862.1	chr13	93461658	93461858	+	1	NA	NA	NA	38050	NM_021310	57748	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	0.015000	0.432836	
mm_133322.1	chr16	78217073	78217273	+	1	NA	NA	NA	38281	NR_045698	100503619	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.025000	0.482587	-60(CCTCTTATAACC,+,0.00)
mm_170287.1	chr1	82948821	82949021	+	1	NA	NA	NA	89527	NM_030556	80721	Mm.261542	NM_030556	ENSMUSG00000038496	Slc19a3	A230084E24Rik|AI788884|ThTr2	solute carrier family 19, member 3	protein-coding	0.010000	0.482587	
mm_73382.1	chr8	105685894	105686094	+	1	NA	NA	NA	-4912	NM_001033320	234695	Mm.471640	NM_001033320	ENSMUSG00000050357	Carmil2	CG1399-PB|D130029J02Rik|Gm585|Rltpr	capping protein regulator and myosin 1 linker 2	protein-coding	0.055000	0.621891	
mm_129366.1	chr15	77970687	77970887	-	1	NA	NA	NA	37	NM_018749	55944	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	0.090000	0.582090	
mm_62722.1	chr7	110773530	110773730	+	1	NA	NA	NA	1026	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.020000	0.562189	
mm_86329.1	chr9	123061719	123061919	-	1	NA	NA	NA	27078	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.015000	0.482587	
mm_131512.1	chr16	17508824	17509024	+	1	NA	NA	NA	241	NM_025808	66863	Mm.161726	NM_025808	ENSMUSG00000022761	Lztr1	1200003E21Rik|AI591627|AW550890	leucine-zipper-like transcriptional regulator, 1	protein-coding	0.105000	0.661692	
mm_133266.1	chr16	77361422	77361622	+	1	NA	NA	NA	32194	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.000000	0.338308	
mm_55841.1	chr6	83156309	83156509	-	1	NA	NA	NA	5	NM_027948	71837	Mm.17621	NM_027948	ENSMUSG00000030030	1700003E16Rik	AU041756	RIKEN cDNA 1700003E16 gene	protein-coding	0.115000	0.686567	
mm_104247.1	chr11	88851392	88851592	-	1	NA	NA	NA	11	NM_009648	11640	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	0.035000	0.626866	
mm_172614.1	chr8	19694849	19695049	+	1	NA	NA	NA	-34627	NM_001270553	100861668	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.000000	0.398010	
mm_164989.1	chr19	11279311	11279511	-	1	NA	NA	NA	4402	NM_183190	269063	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	0.015000	0.427861	-62(GGCTATAAAAAG,-,0.00),-25(CGATTTAAATGG,-,0.00)
mm_128858.1	chr15	72806135	72806335	-	1	NA	NA	NA	4089	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.010000	0.487562	
mm_64627.1	chr7	3685851	3686051	-	1	NA	NA	NA	7574	NM_029934	77582	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	0.060000	0.671642	
mm_117291.1	chr13	66932822	66933022	-	1	NA	NA	NA	92	NM_008959	19210	Mm.281464	NM_008959	ENSMUSG00000021518	Ptdss1	AU044268|AW539008|PSS-1|mKIAA0024	phosphatidylserine synthase 1	protein-coding	0.105000	0.641791	
mm_48683.1	chr5	146655466	146655666	-	1	NA	NA	NA	-70327	NM_001010941	14738	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	0.005000	0.542289	
mm_6282.1	chr1	69684202	69684402	-	1	NA	NA	NA	1658	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.010000	0.462687	
mm_9293.1	chr1	171636579	171636779	-	1	NA	NA	NA	5221	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.015000	0.393035	
mm_107377.1	chr12	32954129	32954329	+	1	NA	NA	NA	43	NM_198710	19027	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	0.110000	0.736318	
mm_775.1	chr1	44551463	44551663	+	1	NA	NA	NA	-108	NM_028450	70676	Mm.133132	NM_027506	ENSMUSG00000056870	Gulp1	3110030A04Rik|5730529O06Rik|CED-6|Ced6|GULP|Gulp-2	GULP, engulfment adaptor PTB domain containing 1	protein-coding	0.040000	0.542289	-33(TGCCTTTAAAAG,-,0.00),-32(GCCTTTAAAAGC,+,0.00),-32(GCCTTTAAAAGC,-,0.00),-31(CCTTTAAAAGCA,+,0.00)
mm_15744.1	chr2	164237341	164237541	+	1	NA	NA	NA	900	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.015000	0.437811	
mm_167940.1	chrX	116448829	116449029	+	1	NA	NA	NA	-15	NM_001033471	382239	Mm.336224	NM_001033471	ENSMUSG00000072995	Cpxcr1	Gm1143	CPX chromosome region, candidate 1	protein-coding	0.000000	0.393035	
mm_50308.1	chr6	47835634	47835834	+	1	NA	NA	NA	73	NM_027477	272347	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	0.125000	0.711443	
mm_127870.1	chr15	8444087	8444287	-	1	NA	NA	NA	276	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.100000	0.641791	
mm_152317.1	chr19	9914092	9914292	-	1	NA	NA	NA	-14659	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.005000	0.487562	
mm_109213.1	chr12	108677689	108677889	+	1	NA	NA	NA	19169	NR_029771	723909		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.005000	0.417910	
mm_173332.1	chrY	90784949	90785149	+	1	NA	NA	NA	-393	NR_137282	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.045000	0.497512	
mm_5536.1	chr1	38112051	38112251	-	1	NA	NA	NA	17511	NM_019570	56210	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	0.010000	0.393035	32(GCTTTTAGAGTC,+,0.00)
mm_92103.1	chr10	63023638	63023838	-	1	NA	NA	NA	111	NM_001079824	432467	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	0.125000	0.706468	
mm_40169.1	chr5	35814339	35814539	+	1	NA	NA	NA	56559	NM_001177698	231148	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0.045000	0.646766	
mm_123627.1	chr14	68124397	68124597	-	1	NA	NA	NA	507	NM_008691	18040	Mm.242832	NM_008691	ENSMUSG00000022054	Nefm	NF-M|NF160|NF165|Nef3|Nfm	neurofilament, medium polypeptide	protein-coding	0.085000	0.597015	
mm_15080.1	chr2	153161230	153161430	+	1	NA	NA	NA	29	NM_133847	99237	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.030000	0.502488	
mm_111464.1	chr12	98528658	98528858	-	1	NA	NA	NA	4914	NR_136759	105245437	Mm.446375	NR_136759		Gm40893	-	predicted gene, 40893	ncRNA	0.025000	0.562189	
mm_81729.1	chr9	113368904	113369104	+	1	NA	NA	NA	218148	NR_040760	102688	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	0.010000	0.442786	
mm_104498.1	chr11	95842369	95842569	-	1	NA	NA	NA	7	NM_001163464	66610	Mm.485545	NM_025659	ENSMUSG00000018381	Abi3	2210414K06Rik|AI987680|NESH	ABI gene family, member 3	protein-coding	0.010000	0.587065	
mm_125101.1	chr15	27681570	27681770	+	1	NA	NA	NA	-128	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.110000	0.686567	
mm_47957.1	chr5	135572944	135573144	-	1	NA	NA	NA	-1	NM_019577	56221	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0.045000	0.572139	-34(GTCCATATAAAG,-,0.00),-32(CCATATAAAGAC,+,0.00)
mm_52088.1	chr6	97829577	97829777	+	1	NA	NA	NA	22619	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.010000	0.462687	
mm_85619.1	chr9	107614753	107614953	-	1	NA	NA	NA	-5612	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.030000	0.592040	
mm_169959.1	chr1	6916448	6916648	+	1	NA	NA	NA	-172372	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.055000	0.522388	
mm_61821.1	chr7	87584299	87584499	+	1	NA	NA	NA	231	NM_001143834	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0.100000	0.666667	
mm_43252.1	chr5	130204835	130205035	+	1	NA	NA	NA	-14809	NM_001081394	71667	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0.000000	0.378109	
mm_32151.1	chr4	99929335	99929535	+	1	NA	NA	NA	-16	NM_028132	72157	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.060000	0.636816	-93(CTTTATATAGAC,+,0.00)
mm_59564.1	chr7	28086434	28086634	+	1	NA	NA	NA	15298	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.040000	0.562189	61(GCCTTTAAGGTG,+,0.00),62(CCTTTAAGGTGC,+,0.00)
mm_24385.1	chr3	90254147	90254347	+	1	NA	NA	NA	-34	NM_028881	74343	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2|mTORC2	CREB regulated transcription coactivator 2	protein-coding	0.095000	0.686567	
mm_26624.1	chr3	152714016	152714216	+	1	NA	NA	NA	16	NM_025662	329777	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0.080000	0.666667	
mm_34596.1	chr4	150236626	150236826	+	1	NA	NA	NA	-471	NM_023119	13806	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	0.085000	0.701493	
mm_34156.1	chr4	139430972	139431172	+	1	NA	NA	NA	50413	NM_001160319	69116	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0.005000	0.467662	
mm_69052.1	chr7	126862272	126862472	-	1	NA	NA	NA	400	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	0.080000	0.572139	
mm_146049.1	chr18	69593452	69593652	+	1	NA	NA	NA	247831	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.045000	0.502488	
mm_132429.1	chr16	35770313	35770513	+	1	NA	NA	NA	27	NM_175111	66667	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	0.115000	0.681592	
mm_751.1	chr1	43730547	43730747	+	1	NA	NA	NA	45	NM_024283	78896	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	0.040000	0.616915	
mm_72697.1	chr8	84976652	84976852	+	1	NA	NA	NA	1996	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.065000	0.616915	
mm_85303.1	chr9	100545973	100546173	-	1	NA	NA	NA	61	NM_010878	17973	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0.155000	0.751244	
mm_144291.1	chr18	12147167	12147367	+	1	NA	NA	NA	18417	NM_024182	66878	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	0.005000	0.388060	-55(TGCTATTTAAGC,-,0.00)
mm_68995.1	chr7	126649468	126649668	-	1	NA	NA	NA	259	NM_029339	75565	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	0.120000	0.731343	
mm_30168.1	chr3	144200835	144201035	-	1	NA	NA	NA	1397	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.005000	0.373134	
mm_88128.1	chr10	69325108	69325308	+	1	NA	NA	NA	27704	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.030000	0.512438	
mm_25436.1	chr3	108085942	108086142	+	1	NA	NA	NA	-616	NM_001289720	109674	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0.025000	0.562189	
mm_52027.1	chr6	95117831	95118031	+	1	NA	NA	NA	51	NM_001008785	243574	Mm.333275	NM_001008785	ENSMUSG00000030031	Kbtbd8	AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842	kelch repeat and BTB (POZ) domain containing 8	protein-coding	0.105000	0.661692	
mm_72389.1	chr8	81766459	81766659	+	1	NA	NA	NA	423997	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.005000	0.393035	
mm_75958.1	chr8	71702520	71702720	-	1	NA	NA	NA	-820	NM_028189	72297	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	0.015000	0.547264	
mm_38637.1	chr4	143133731	143133931	-	1	NA	NA	NA	2331	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	0.010000	0.616915	
mm_163944.1	chr14	51172628	51172828	+	1	NA	NA	NA	10468	NM_019398	54159	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	0.020000	0.522388	35(GCTTTTAGGAGC,+,0.00)
mm_23655.1	chr3	67603110	67603310	+	1	NA	NA	NA	20442	NM_025813	66868	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.005000	0.363184	
mm_60226.1	chr7	43579680	43579880	+	1	NA	NA	NA	194	NM_172482	210105	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	0.050000	0.587065	
mm_24940.1	chr3	96576885	96577085	+	1	NA	NA	NA	-10184	NR_040409	100038464	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	ENSMUSG00000074398|OTTMUSG00000021867	predicted gene 15441	ncRNA	0.015000	0.537313	
mm_121607.1	chr14	8257983	8258183	-	1	NA	NA	NA	756	NM_001161667	93732	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0.020000	0.577114	
mm_3224.1	chr1	135847939	135848139	+	1	NA	NA	NA	7178	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.035000	0.567164	
mm_162488.1	chr1	135766095	135766295	+	1	NA	NA	NA	110	NM_013750	27280	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	0.145000	0.746269	
mm_62450.1	chr7	101385438	101385638	+	1	NA	NA	NA	12	NM_027180	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.025000	0.577114	-42(GCCCCTTAGAGG,-,0.00)
mm_48570.1	chr5	143315203	143315403	-	1	NA	NA	NA	57	NM_172726	231868	Mm.440105	NM_172726	ENSMUSG00000039244	E130309D02Rik	A630028N22	RIKEN cDNA E130309D02 gene	protein-coding	0.170000	0.786070	
mm_19153.1	chr2	80581150	80581350	-	1	NA	NA	NA	-68	NM_016965	50884	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0.165000	0.796020	
mm_81267.1	chr9	108053060	108053260	+	1	NA	NA	NA	1	NM_177275	320844	Mm.449806	NM_177275	ENSMUSG00000032593	Amigo3	E430002N15Rik|ali3|mKIAA1851	adhesion molecule with Ig like domain 3	protein-coding	0.030000	0.587065	
mm_100841.1	chr11	5739268	5739468	-	1	NA	NA	NA	1808	NM_178623	72046	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	0.000000	0.323383	
mm_56237.1	chr6	90662777	90662977	-	1	NA	NA	NA	43631	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.030000	0.616915	-88(TCCTTTTTAGGG,-,0.00),-86(CTTTTTAGGGCT,+,0.00)
mm_130193.1	chr15	94543393	94543593	-	1	NA	NA	NA	14	NM_172437	78895	Mm.34344	NM_172437	ENSMUSG00000033356	Pus7l	3000003F02Rik	pseudouridylate synthase 7-like	protein-coding	0.055000	0.597015	
mm_156328.1	chrX	138914353	138914553	+	1	NA	NA	NA	23	NM_013724	27206	Mm.482319	NM_013724	ENSMUSG00000052854	Nrk	AA407323|AA409510|AI225895|AV168563|AW538185|Nesk	Nik related kinase	protein-coding	0.090000	0.646766	
mm_151712.1	chr19	4625004	4625204	-	1	NA	NA	NA	513	NM_023131	19671	Mm.391143	NM_023131	ENSMUSG00000024889	Rce1	D19Ertd283e|D19Ertd98e	Ras converting CAAX endopeptidase 1	protein-coding	0.015000	0.577114	
mm_8153.1	chr1	136789473	136789673	-	1	NA	NA	NA	93362	NR_037986	100503474	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0.045000	0.477612	-44(AGGTTTTAAAGG,-,0.00)
mm_59998.1	chr7	30565321	30565521	+	1	NA	NA	NA	-6	NM_145580	101883	Mm.333757	NM_145580	ENSMUSG00000036826	Igflr1	F630003I17Rik|Tmem149	IGF-like family receptor 1	protein-coding	0.005000	0.502488	59(GCTTTAATACCT,+,0.00)
mm_110113.1	chr12	26443598	26443798	-	1	NA	NA	NA	12754	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.417910	
mm_5545.1	chr1	38615440	38615640	-	1	NA	NA	NA	11704	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.010000	0.353234	
mm_99201.1	chr11	101022588	101022788	+	1	NA	NA	NA	-7652	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.015000	0.457711	
mm_99590.1	chr11	104309711	104309911	+	1	NA	NA	NA	78375	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.010000	0.557214	
mm_59846.1	chr7	29768547	29768747	+	1	NA	NA	NA	95	NM_023750	74352	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	0.055000	0.507463	
mm_35286.1	chr4	21722908	21723108	-	1	NA	NA	NA	-4693	NM_001290422	51813	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	0.030000	0.507463	-82(TCCCCTATAAAG,-,0.00),-80(CCCTATAAAGGA,+,0.00),-80(CCCTATAAAGGA,-,0.00)
mm_112591.1	chr13	13954447	13954647	+	1	NA	NA	NA	-127	NM_178640	97884	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0.095000	0.676617	
mm_78372.1	chr9	27348928	27349128	+	1	NA	NA	NA	-3657	NR_027907	235086	Mm.48719	NM_001033323	ENSMUSG00000034275	Igsf9b	AI414108|AI854107|Gm508|mKIAA1030	immunoglobulin superfamily, member 9B	protein-coding	0.000000	0.402985	
mm_4971.1	chr1	191290633	191290833	+	1	NA	NA	NA	27385	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.000000	0.487562	
mm_104384.1	chr11	94474236	94474436	-	1	NA	NA	NA	-138	NM_001112813	12291	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0.110000	0.696517	
mm_67784.1	chr7	97417425	97417625	-	1	NA	NA	NA	25	NM_009381	21835	Mm.28585	NM_009381	ENSMUSG00000035686	Thrsp	S14|SPOT14	thyroid hormone responsive	protein-coding	0.040000	0.537313	
mm_23137.1	chr3	38885593	38885793	+	1	NA	NA	NA	-1247	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.095000	0.721393	
mm_164155.1	chr15	65947247	65947447	+	1	NA	NA	NA	29457	NM_001145096	654498	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0.005000	0.402985	
mm_70110.1	chr7	142666113	142666313	-	1	NA	NA	NA	603	NM_001315488	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.015000	0.567164	
mm_127933.1	chr15	10485821	10486021	-	1	NA	NA	NA	16	NM_026396	67832	Mm.28057	NM_026396	ENSMUSG00000022247	Brix1	1110064N10Rik|Bxdc2|C76935	BRX1, biogenesis of ribosomes	protein-coding	0.105000	0.611940	
mm_158627.1	chrX	153037361	153037561	-	1	NA	NA	NA	102	NM_023788	75625	Mm.6890	NM_023788	ENSMUSG00000047238	Mageh1	2010107K23Rik|APR-1|APR1	melanoma antigen, family H, 1	protein-coding	0.075000	0.601990	
mm_35038.1	chr4	4138124	4138324	-	1	NA	NA	NA	221	NM_001002927	18619	Mm.475097	NM_001002927	ENSMUSG00000045573	Penk	AI326464|ENK|PPA|Penk1	preproenkephalin	protein-coding	0.045000	0.601990	
mm_137999.1	chr17	33759942	33760142	+	1	NA	NA	NA	444	NM_008997	19326	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0.090000	0.716418	
mm_101870.1	chr11	48891790	48891990	-	1	NA	NA	NA	10262	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.000000	0.373134	
mm_85776.1	chr9	109054690	109054890	-	1	NA	NA	NA	-76	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.015000	0.582090	-33(CCCTCTTAAAGA,-,0.00),-32(CCTCTTAAAGAC,+,0.00)
mm_8091.1	chr1	135688735	135688935	-	1	NA	NA	NA	-40362	NM_007791	13007	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.025000	0.542289	
mm_148718.1	chr19	5842205	5842405	+	1	NA	NA	NA	3173	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.015000	0.437811	
mm_145082.1	chr18	42394377	42394577	+	1	NA	NA	NA	-120	NM_138945	18998	Mm.488204	NM_138945	ENSMUSG00000024497	Pou4f3	Brn3.1|Brn3c|ddl|dreidel	POU domain, class 4, transcription factor 3	protein-coding	0.105000	0.716418	
mm_73047.1	chr8	94354968	94355168	+	1	NA	NA	NA	25860	NM_001205311	20497	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.025000	0.537313	
mm_35366.1	chr4	32571575	32571775	-	1	NA	NA	NA	-13	NR_026843	414068	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0.000000	0.472637	-30(TTCTTTAAGAGG,-,0.00)
mm_8717.1	chr1	159168587	159168787	-	1	NA	NA	NA	-63639	NM_011931	26374	Mm.328135	NM_011931	ENSMUSG00000040782	Rfwd2	AI316802|C80879|Cop1	ring finger and WD repeat domain 2	protein-coding	0.015000	0.442786	62(TGCTCTAAAAAC,-,0.00)
mm_13142.1	chr2	92184218	92184418	+	1	NA	NA	NA	136	NM_001346704	192285	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0.005000	0.587065	
mm_26297.1	chr3	142507837	142508037	+	1	NA	NA	NA	11003	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.025000	0.487562	
mm_132513.1	chr16	37384398	37384598	+	1	NA	NA	NA	460	NM_001114613	207227	Mm.80170	NM_172440	ENSMUSG00000022829	Stxbp5l	9430094L02|A830015P08Rik|LLGL4|T2dm1|t2md1|tomosyn-2	syntaxin binding protein 5-like	protein-coding	0.090000	0.741294	
mm_133995.1	chr16	4719002	4719202	-	1	NA	NA	NA	254	NM_001290763	67824	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	0.045000	0.567164	
mm_133207.1	chr16	74619945	74620145	+	1	NA	NA	NA	-209133	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.025000	0.462687	
mm_116365.1	chr13	40730723	40730923	-	1	NA	NA	NA	-366	NM_001122948	21418	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.105000	0.631841	-85(CCTTTTAAAATG,+,0.00)
mm_26797.1	chr3	9833561	9833761	-	1	NA	NA	NA	18	NM_053182	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.155000	0.761194	
mm_142419.1	chr17	45568298	45568498	-	1	NA	NA	NA	4246	NM_028662	73836	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.025000	0.542289	
mm_121016.1	chr14	79536239	79536439	+	1	NA	NA	NA	20665	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.015000	0.522388	
mm_31374.1	chr4	47387056	47387256	+	1	NA	NA	NA	940	NM_001312869	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.000000	0.412935	-73(GCATATAAAGGC,+,0.00),-73(GCATATAAAGGC,-,0.00)
mm_2920.1	chr1	132030681	132030881	+	1	NA	NA	NA	23176	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.005000	0.477612	
mm_97714.1	chr11	80179261	80179461	+	1	NA	NA	NA	-4511	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.010000	0.417910	
mm_132095.1	chr16	31297239	31297439	+	1	NA	NA	NA	17469	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.035000	0.492537	
mm_169051.1	chr1	32074488	32074688	-	1	NA	NA	NA	-98218	NM_133235	170771	Mm.336594	NM_133235	ENSMUSG00000026058	Khdrbs2	6330586C16Rik|Slim1|Slm-1|Slm1|mSLM-1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding	0.045000	0.437811	
mm_97459.1	chr11	78245415	78245615	+	1	NA	NA	NA	188	NM_009297	20926	Mm.20755	NM_009297	ENSMUSG00000002052	Supt6	5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162	suppressor of Ty 6	protein-coding	0.060000	0.626866	
mm_70100.1	chr7	142661097	142661297	-	1	NA	NA	NA	74	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.065000	0.592040	
mm_8576.1	chr1	155778999	155779199	-	1	NA	NA	NA	33800	NM_023268	104009	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx	quiescin Q6 sulfhydryl oxidase 1	protein-coding	0.005000	0.502488	
mm_106334.1	chr11	118355397	118355597	-	1	NA	NA	NA	-86	NM_011594	21858	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0.095000	0.716418	
mm_34118.1	chr4	139228736	139228936	+	1	NA	NA	NA	34725	NM_001271405	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.005000	0.512438	
mm_97301.1	chr11	76547873	76548073	+	1	NA	NA	NA	23411	NM_198895	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.005000	0.457711	-50(CCATTTAAAAAG,-,0.00)
mm_120290.1	chr14	63135438	63135638	+	1	NA	NA	NA	13076	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.020000	0.497512	
mm_79275.1	chr9	50768150	50768350	+	1	NA	NA	NA	12	NM_198675	382137	Mm.390169	NM_198675	ENSMUSG00000037845	Fdxacb1	D630004A14Rik	ferredoxin-fold anticodon binding domain containing 1	protein-coding	0.090000	0.626866	
mm_22739.1	chr3	19895010	19895210	+	1	NA	NA	NA	239	NR_027985	70808	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	0.095000	0.686567	
mm_168716.1	chr12	105685273	105685473	+	1	NA	NA	NA	21	NM_178613	66787	Mm.248019	NM_178613	ENSMUSG00000044715	Gskip	4933433P14Rik	GSK3B interacting protein	protein-coding	0.095000	0.661692	
mm_127324.1	chr15	100304117	100304317	+	1	NA	NA	NA	-600	NM_027334	70152	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	0.010000	0.402985	
mm_65725.1	chr7	28380876	28381076	-	1	NA	NA	NA	-1748	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.025000	0.492537	
mm_78133.1	chr9	20868761	20868961	+	1	NA	NA	NA	219	NM_175687	319278	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	0.100000	0.711443	
mm_164852.1	chr18	47368867	47369067	-	1	NA	NA	NA	-97	NM_001311097	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.085000	0.691542	
mm_96617.1	chr11	69100924	69101124	+	1	NA	NA	NA	866	NM_001159367	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.015000	0.562189	
mm_45688.1	chr5	77370710	77370910	-	1	NA	NA	NA	37235	NM_001159518	29817	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	0.000000	0.293532	
mm_123750.1	chr14	70192725	70192925	-	1	NA	NA	NA	-579	NM_001271409	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.005000	0.507463	
mm_29486.1	chr3	115714759	115714959	-	1	NA	NA	NA	196	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.075000	0.666667	
mm_50307.1	chr6	47835588	47835788	+	1	NA	NA	NA	27	NM_027477	272347	Mm.169059	NM_027477	ENSMUSG00000062519	Zfp398	5730513I23Rik	zinc finger protein 398	protein-coding	0.125000	0.746269	
mm_128002.1	chr15	12823711	12823911	-	1	NA	NA	NA	846	NM_029998	77877	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	0.000000	0.368159	
mm_100134.1	chr11	115974773	115974973	+	1	NA	NA	NA	148	NM_133663	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.105000	0.776119	
mm_63804.1	chr7	133123925	133124125	+	1	NA	NA	NA	-542	NM_009980	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.065000	0.626866	
mm_92531.1	chr10	79555007	79555207	-	1	NA	NA	NA	21	NM_001316699	70427	Mm.334193	NM_027422	ENSMUSG00000042570	Mier2	2700087H15Rik|mKIAA1193	MIER family member 2	protein-coding	0.135000	0.761194	
mm_153434.1	chr19	40955516	40955716	-	1	NA	NA	NA	38919	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.020000	0.472637	
mm_114887.1	chr13	94295167	94295367	+	1	NA	NA	NA	-9436	NM_001346609	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.000000	0.447761	
mm_52378.1	chr6	113107516	113107716	+	1	NA	NA	NA	2681	NM_173005	72895	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0.000000	0.283582	
mm_59314.1	chr7	25289283	25289483	+	1	NA	NA	NA	7204	NM_027882	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.000000	0.572139	
mm_77917.1	chr9	7351010	7351210	+	1	NA	NA	NA	3736	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.368159	
mm_115146.1	chr13	104849550	104849750	+	1	NA	NA	NA	14243	NM_029984	77803	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik	family with sequence similarity 159, member B	protein-coding	0.010000	0.477612	
mm_87425.1	chr10	50779388	50779588	+	1	NA	NA	NA	-116163	NM_011376	20464	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded homolog 1 (Drosophila)	protein-coding	0.020000	0.457711	
mm_156536.1	chrX	151072259	151072459	+	1	NA	NA	NA	24184	NM_001164578	69499	Mm.8142	NM_175146	ENSMUSG00000025264	Tsr2	2310007F12Rik	TSR2 20S rRNA accumulation	protein-coding	0.010000	0.507463	
mm_157622.1	chrX	56549598	56549798	-	1	NA	NA	NA	-92	NM_001033372	270599	Mm.424438	NM_001033372	ENSMUSG00000064016	Gm648	-	predicted gene 648	protein-coding	0.020000	0.547264	
mm_95797.1	chr11	55103453	55103653	+	1	NA	NA	NA	5568	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.005000	0.497512	
mm_44669.1	chr5	29478488	29478688	-	1	NA	NA	NA	-118	NM_019944	15285	Mm.103760	NM_019944	ENSMUSG00000001566	Mnx1	HB9|Hlxb9|MNR2	motor neuron and pancreas homeobox 1	protein-coding	0.085000	0.666667	
mm_67376.1	chr7	79841911	79842111	-	1	NA	NA	NA	341	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.030000	0.562189	
mm_20736.1	chr2	137116301	137116501	-	1	NA	NA	NA	119	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.100000	0.592040	
mm_46813.1	chr5	113137988	113138188	-	1	NA	NA	NA	497	NM_001347397	243219	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.070000	0.641791	
mm_170348.1	chr18	51002916	51003116	+	1	NA	NA	NA	-114882	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0.090000	0.572139	
mm_25234.1	chr3	103885858	103886058	+	1	NA	NA	NA	25681	NM_008979	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.020000	0.482587	
mm_17877.1	chr2	34958520	34958720	-	1	NA	NA	NA	3152	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.010000	0.497512	
mm_1328.1	chr1	65186599	65186799	+	1	NA	NA	NA	14	NM_001310624	18711	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE finger containing	protein-coding	0.100000	0.681592	
mm_31581.1	chr4	57781068	57781268	+	1	NA	NA	NA	-64080	NM_009649	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.035000	0.547264	-34(GACTATAAAGGA,-,0.00)
mm_106611.1	chr11	120809066	120809266	-	1	NA	NA	NA	-12771	NM_026824	68730	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0.030000	0.582090	
mm_155647.1	chrX	85614518	85614718	+	1	NA	NA	NA	40596	NM_025729	66724	Mm.119646	NM_025729	ENSMUSG00000035476	Tab3	4921526G09Rik|Map3k7ip3|mKIAA4135	TGF-beta activated kinase 1/MAP3K7 binding protein 3	protein-coding	0.005000	0.452736	
mm_154621.1	chrX	7722955	7723155	+	1	NA	NA	NA	128	NM_001290794	54636	Mm.305725	NM_172372	ENSMUSG00000039382	Wdr45	C79260|DXImx38e|JM5|Sfc19|WIPI-4|Wdrx1	WD repeat domain 45	protein-coding	0.010000	0.492537	
mm_154198.1	chr19	58982842	58983042	-	1	NA	NA	NA	-39270	NM_001327998	73442	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0.015000	0.368159	
mm_124403.1	chr14	115207442	115207642	-	1	NA	NA	NA	115327	NM_175500	103978	Mm.320791	NM_175500	ENSMUSG00000022112	Gpc5	A230034F01Rik	glypican 5	protein-coding	0.000000	0.567164	-35(CACTATAAAAGG,-,0.00)
mm_94732.1	chr11	20917202	20917402	+	1	NA	NA	NA	-86194	NM_173752	216551	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.010000	0.447761	
mm_112747.1	chr13	19341722	19341922	+	1	NA	NA	NA	53991	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.338308	
mm_129655.1	chr15	81045358	81045558	-	1	NA	NA	NA	59589	NM_153049	223701	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.015000	0.502488	13(CCTTTTAGACTT,+,0.00)
mm_132559.1	chr16	38088987	38089187	+	1	NA	NA	NA	86	NM_019827	56637	Mm.394930	NM_019827	ENSMUSG00000022812	Gsk3b	7330414F15Rik|8430431H08Rik|C86142|GSK-3|GSK-3beta|GSK3	glycogen synthase kinase 3 beta	protein-coding	0.075000	0.592040	
mm_151632.1	chr19	3929644	3929844	-	1	NA	NA	NA	-28	NM_026316	67689	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0.030000	0.616915	
mm_18643.1	chr2	69522543	69522743	-	1	NA	NA	NA	63424	NM_001081088	14725	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	0.005000	0.378109	
mm_96220.1	chr11	62509223	62509423	+	1	NA	NA	NA	29938	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.015000	0.522388	
mm_106962.1	chr12	8921989	8922189	+	1	NA	NA	NA	782	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.125000	0.701493	
mm_50917.1	chr6	57602773	57602973	+	1	NA	NA	NA	21881	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.015000	0.462687	
mm_41105.1	chr5	87775204	87775404	+	1	NA	NA	NA	854	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.015000	0.472637	
mm_39897.1	chr5	31203162	31203362	+	1	NA	NA	NA	-959	NM_175311	101023	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	0.015000	0.497512	
mm_1432.1	chr1	67193189	67193389	+	1	NA	NA	NA	70262	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.303483	
mm_58175.1	chr6	142757080	142757280	-	1	NA	NA	NA	494	NM_009908	12764	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.030000	0.592040	
mm_37797.1	chr4	130520119	130520319	-	1	NA	NA	NA	53817	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.055000	0.587065	
mm_88193.1	chr10	70095252	70095452	+	1	NA	NA	NA	-1769	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.040000	0.552239	
mm_13908.1	chr2	120499960	120500160	+	1	NA	NA	NA	23151	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.025000	0.532338	-35(GTTTATAAAAGC,-,0.00)
mm_105457.1	chr11	104550315	104550515	-	1	NA	NA	NA	205	NM_001285990	217232	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	0.060000	0.666667	
mm_121699.1	chr14	14294572	14294772	-	1	NA	NA	NA	-33441	NM_147027	18330	Mm.484338	NM_147027	ENSMUSG00000072707	Olfr31	MOR274-1|MTPCR53	olfactory receptor 31	protein-coding	0.025000	0.601990	
mm_9499.1	chr1	173730004	173730204	-	1	NA	NA	NA	11705	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.000000	0.427861	
mm_155157.1	chrX	52926910	52927110	+	1	NA	NA	NA	14796	NM_001290546	70998	Mm.26870	NM_027642	ENSMUSG00000025626	Phf6	2700007B13Rik|4931428F02Rik|mKIAA1823	PHD finger protein 6	protein-coding	0.020000	0.547264	
mm_56155.1	chr6	87845601	87845801	-	1	NA	NA	NA	5405	NM_001109746	12785	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	0.040000	0.487562	
mm_120912.1	chr14	76251466	76251666	+	1	NA	NA	NA	140675	NM_013745	27275	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.005000	0.522388	71(CCTTTTATATTG,+,0.00)
mm_48360.1	chr5	139406025	139406225	-	1	NA	NA	NA	-262	NM_177000	319772	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.010000	0.542289	
mm_112324.1	chr12	115372374	115372574	-	1	NA	NA	NA	323320	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.000000	0.412935	
mm_144235.1	chr18	10617751	10617951	+	1	NA	NA	NA	55	NM_009226	20641	Mm.603	NM_009226	ENSMUSG00000002477	Snrpd1	AA407109|AL023031|SMD1	small nuclear ribonucleoprotein D1	protein-coding	0.115000	0.661692	
mm_40597.1	chr5	64237862	64238062	+	1	NA	NA	NA	7605	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.010000	0.333333	86(TCCTATTTATGG,-,0.00)
mm_25192.1	chr3	103575181	103575381	+	1	NA	NA	NA	-1	NM_001276679	54524	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	0.085000	0.696517	
mm_162709.1	chr10	24553254	24553454	+	1	NA	NA	NA	-42088	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.005000	0.477612	
mm_135036.1	chr16	32868247	32868447	-	1	NA	NA	NA	19	NM_001200038	100502698	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Kiaa0226|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	0.025000	0.592040	
mm_46602.1	chr5	107868882	107869082	-	1	NA	NA	NA	6125	NM_007964	14020	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0.155000	0.761194	-99(CTCTTTAAGGCC,+,0.00)
mm_8227.1	chr1	138175090	138175290	-	1	NA	NA	NA	-64	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.005000	0.417910	
mm_62931.1	chr7	118649071	118649271	+	1	NA	NA	NA	15435	NM_028930	74424	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	0.005000	0.532338	
mm_172535.1	chr7	94394944	94395144	-	1	NA	NA	NA	1315165	NM_021427	58238	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.055000	0.636816	
mm_51400.1	chr6	78372018	78372218	+	1	NA	NA	NA	1233	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.010000	0.477612	
mm_89093.1	chr10	84308753	84308953	+	1	NA	NA	NA	131618	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.045000	0.557214	
mm_89972.1	chr10	111506453	111506653	+	1	NA	NA	NA	267	NM_009344	21664	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0.115000	0.736318	
mm_170662.1	chr2	113920433	113920633	-	1	NA	NA	NA	-71872	NM_181416	228482	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	0.050000	0.507463	-91(CTTTTTATAAGG,+,0.00),-91(CTTTTTATAAGG,-,0.00)
mm_73257.1	chr8	104340520	104340720	+	1	NA	NA	NA	26	NM_024217	68119	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.070000	0.656716	
mm_29024.1	chr3	101924535	101924735	-	1	NA	NA	NA	-182	NM_001039371	242126	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	0.075000	0.616915	
mm_120163.1	chr14	60750065	60750265	+	1	NA	NA	NA	17261	NM_001310594	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.025000	0.447761	
mm_8461.1	chr1	153249024	153249224	-	1	NA	NA	NA	-62677	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.030000	0.522388	
mm_67713.1	chr7	89980513	89980713	-	1	NA	NA	NA	363	NM_021876	13626	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	ENSMUSG00000039373|l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	0.140000	0.751244	
mm_93914.1	chr10	127060263	127060463	-	1	NA	NA	NA	-179	NM_001033262	216438	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	0.085000	0.721393	
mm_47811.1	chr5	134176612	134176812	-	1	NA	NA	NA	55	NM_033572	94254	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0.130000	0.696517	
mm_46531.1	chr5	105693888	105694088	-	1	NA	NA	NA	-5981	NM_001122768	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.015000	0.522388	
mm_170703.1	chr2	138035217	138035417	+	1	NA	NA	NA	-221267	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.045000	0.492537	-39(CTCCTTAAGAGG,-,0.00)
mm_90007.1	chr10	113272737	113272937	+	1	NA	NA	NA	-313741	NR_035418	100316831		NR_035418	ENSMUSG00000080594	Mir669h	Mirn669h|mir-669h|mmu-mir-669h	microRNA 669h	ncRNA	0.050000	0.517413	
mm_23317.1	chr3	53260736	53260936	+	1	NA	NA	NA	202422	NM_172501	212114	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0.015000	0.407960	
mm_18809.1	chr2	73912349	73912549	-	1	NA	NA	NA	-1123	NM_001301722	228033	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	0.015000	0.562189	
mm_163333.1	chr12	11436381	11436581	-	1	NA	NA	NA	168	NM_012038	26950	Mm.27005	NM_012038	ENSMUSG00000054459	Vsnl1	VILIP|Vnsl1	visinin-like 1	protein-coding	0.050000	0.472637	-9(TCCTAGAAAAGG,-,0.00)
mm_144711.1	chr18	35034015	35034215	+	1	NA	NA	NA	-79764	NM_010481	15526	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.015000	0.582090	
mm_141439.1	chr17	29658219	29658419	-	1	NA	NA	NA	-2276	NM_028791	74157	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	0.010000	0.507463	
mm_117257.1	chr13	64367897	64368097	-	1	NA	NA	NA	2523	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.020000	0.472637	
mm_97424.1	chr11	78037901	78038101	+	1	NA	NA	NA	60	NM_008028	14252	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	0.130000	0.791045	
mm_169871.1	chr16	36071998	36072198	+	1	NA	NA	NA	438	NM_001159421	381045	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	0.075000	0.601990	
mm_105235.1	chr11	102317702	102317902	-	1	NA	NA	NA	-515	NM_001044383	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.145000	0.805970	
mm_55694.1	chr6	72842773	72842973	-	1	NA	NA	NA	-53828	NM_009332	21415	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.005000	0.417910	
mm_126393.1	chr15	80192907	80193107	+	1	NA	NA	NA	19286	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.010000	0.621891	
mm_97389.1	chr11	77801060	77801260	+	1	NA	NA	NA	-138	NM_001291214	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.010000	0.587065	
mm_14063.1	chr2	122704121	122704321	+	1	NA	NA	NA	-1558	NM_001290993	22785	Mm.27801	NM_011774	ENSMUSG00000005802	Slc30a4	Znt4|lm|znT-4	solute carrier family 30 (zinc transporter), member 4	protein-coding	0.005000	0.462687	-36(GGTCATAAAAGG,-,0.00)
mm_20096.1	chr2	120970634	120970834	-	1	NA	NA	NA	-19	NM_009461	22222	Mm.389330	NM_009461	ENSMUSG00000027272	Ubr1	AI504731	ubiquitin protein ligase E3 component n-recognin 1	protein-coding	0.095000	0.676617	
mm_25826.1	chr3	128528593	128528793	+	1	NA	NA	NA	-297088	NR_045704	402774	Mm.209170	NR_045704	ENSMUSG00000105816	D030025E07Rik	-	RIKEN cDNA D030025E07 gene	ncRNA	0.010000	0.363184	
mm_127228.1	chr15	99402032	99402232	+	1	NA	NA	NA	8913	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.015000	0.407960	
mm_99724.1	chr11	106300325	106300525	+	1	NA	NA	NA	1471	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.050000	0.562189	
mm_23983.1	chr3	86040715	86040915	+	1	NA	NA	NA	-38324	NM_001001650	368202	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding	0.025000	0.447761	-36(CTGCTTTAAAGC,-,0.00),77(CTGCTTAAAGGG,-,0.00),79(GCTTAAAGGGTC,+,0.00)
mm_150057.1	chr19	29383523	29383723	+	1	NA	NA	NA	16185	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.020000	0.502488	
mm_107360.1	chr12	32835293	32835493	+	1	NA	NA	NA	11277	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.015000	0.412935	
mm_32350.1	chr4	104936176	104936376	+	1	NA	NA	NA	22820	NM_001285952	242594	Mm.65181	NM_001162980	ENSMUSG00000078612	1700024P16Rik	C1orf168|Gm620	RIKEN cDNA 1700024P16 gene	protein-coding	0.035000	0.527363	
mm_125502.1	chr15	55264877	55265077	+	1	NA	NA	NA	-42773	NM_181277	12818	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.015000	0.552239	
mm_74220.1	chr8	124021425	124021625	+	1	NA	NA	NA	-216	NM_133966	102162	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	0.105000	0.671642	
mm_54544.1	chr6	36809891	36810091	-	1	NA	NA	NA	1370	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.030000	0.577114	
mm_27760.1	chr3	69599122	69599322	-	1	NA	NA	NA	-262	NM_020026	26879	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0.020000	0.557214	
mm_69921.1	chr7	141840389	141840589	-	1	NA	NA	NA	1417	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.030000	0.577114	
mm_151722.1	chr19	4828539	4828739	-	1	NA	NA	NA	10683	NM_016892	12460	Mm.434411	NM_016892	ENSMUSG00000034108	Ccs	Ccsd	copper chaperone for superoxide dismutase	protein-coding	0.015000	0.522388	-31(GTTCCTAAAAGG,-,0.00)
mm_107993.1	chr12	73286744	73286944	+	1	NA	NA	NA	-4	NM_001037717	625098	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0.110000	0.671642	
mm_135657.1	chr16	52400542	52400742	-	1	NA	NA	NA	52439	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.437811	
mm_50495.1	chr6	48990132	48990332	+	1	NA	NA	NA	3371	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.015000	0.577114	
mm_25328.1	chr3	106569252	106569452	+	1	NA	NA	NA	-21550	NM_133869	99712	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.000000	0.398010	
mm_121094.1	chr14	99301905	99302105	+	1	NA	NA	NA	3314	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.025000	0.562189	
mm_122161.1	chr14	31397977	31398177	-	1	NA	NA	NA	19600	NM_001347585	24056	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.015000	0.512438	
mm_165604.1	chr3	50414900	50415100	-	1	NA	NA	NA	28613	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.412935	
mm_133093.1	chr16	62866994	62867194	+	1	NA	NA	NA	12787	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0.000000	0.368159	-54(AGCTATAAAAGG,-,0.00)
mm_77622.1	chr8	123953652	123953852	-	1	NA	NA	NA	-4487	NM_172288	234865	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	0.020000	0.447761	
mm_138336.1	chr17	34898382	34898582	+	1	NA	NA	NA	-10	NM_001286575	110147	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0.150000	0.771144	-70(CTCCTTTAAGGC,-,0.00),-69(TCCTTTAAGGCG,+,0.00)
mm_170446.1	chr18	83700773	83700973	+	1	NA	NA	NA	-374989	NR_045361	70960	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0.030000	0.482587	
mm_77427.1	chr8	121108230	121108430	-	1	NA	NA	NA	49	NM_172761	234814	Mm.31690	NM_172761	ENSMUSG00000031816	Mthfsd	AW049977|BC052066|C920004D05	methenyltetrahydrofolate synthetase domain containing	protein-coding	0.125000	0.666667	
mm_137785.1	chr17	29495546	29495746	+	1	NA	NA	NA	4601	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.010000	0.278607	
mm_39683.1	chr5	25774867	25775067	+	1	NA	NA	NA	14994	NM_001004365	242894	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	0.005000	0.338308	21(ACTTATATACAC,+,0.00)
mm_137751.1	chr17	29398376	29398576	+	1	NA	NA	NA	37562	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.035000	0.402985	
mm_54277.1	chr6	29164906	29165106	-	1	NA	NA	NA	-282	NM_133925	68272	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	0.020000	0.422886	
mm_167088.1	chr7	104471954	104472154	-	1	NA	NA	NA	-6861	NM_009099	20128	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.010000	0.442786	
mm_153365.1	chr19	40271567	40271767	-	1	NA	NA	NA	-51	NM_016861	54132	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	0.115000	0.736318	
mm_94595.1	chr11	11808997	11809197	+	1	NA	NA	NA	-135	NM_001163360	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.100000	0.606965	0(CGCTCTATGAGG,-,0.00)
mm_37214.1	chr4	117891917	117892117	-	1	NA	NA	NA	-14	NM_026344	67728	Mm.13823	NM_026344	ENSMUSG00000028540	Dph2	9130020C19Rik|AI467389|Dph2l2	DPH2 homolog	protein-coding	0.045000	0.542289	
mm_56034.1	chr6	86649328	86649528	-	1	NA	NA	NA	19731	NM_010751	17119	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.005000	0.442786	
mm_60675.1	chr7	45073429	45073629	+	1	NA	NA	NA	11100	NM_025533	66394	Mm.272139	NM_025533	ENSMUSG00000003421	Nosip	2310061K06Rik|CGI-25	nitric oxide synthase interacting protein	protein-coding	0.020000	0.547264	
mm_159507.1	chr4	47385991	47386191	+	1	NA	NA	NA	-125	NM_001312869	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.010000	0.532338	
mm_125728.1	chr15	73155488	73155688	+	1	NA	NA	NA	29359	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.020000	0.457711	
mm_134971.1	chr16	32017725	32017925	-	1	NA	NA	NA	-14538	NM_177103	320213	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	0.000000	0.318408	-7(TTTTTTAAAGAC,+,0.00)
mm_87831.1	chr10	60367509	60367709	+	1	NA	NA	NA	20758	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.015000	0.562189	
mm_79244.1	chr9	50554741	50554941	+	1	NA	NA	NA	297	NM_133217	170752	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	0.010000	0.502488	
mm_18461.1	chr2	62343586	62343786	-	1	NA	NA	NA	68545	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.000000	0.393035	
mm_71895.1	chr8	69902086	69902286	+	1	NA	NA	NA	2	NM_032004	83984	Mm.432504	NM_032004	ENSMUSG00000047654	Tssk6	Sstk|TSK-6|TSSK-6	testis-specific serine kinase 6	protein-coding	0.065000	0.661692	
mm_33012.1	chr4	120854715	120854915	+	1	NA	NA	NA	-23054	NM_182929	242662	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	0.095000	0.751244	
mm_86290.1	chr9	121916202	121916402	-	1	NA	NA	NA	3	NM_010012	13124	Mm.20889	NM_010012	ENSMUSG00000050445	Cyp8b1	-	cytochrome P450, family 8, subfamily b, polypeptide 1	protein-coding	0.025000	0.537313	-37(ACTTATAAAGGC,+,0.00)
mm_43650.1	chr5	138280427	138280627	+	1	NA	NA	NA	18	NM_016964	50878	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	0.105000	0.616915	
mm_88609.1	chr10	79822548	79822748	+	1	NA	NA	NA	1627	NM_030218	78906	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.035000	0.701493	
mm_68545.1	chr7	114234903	114235103	-	1	NA	NA	NA	19677	NM_033370	70349	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	0.015000	0.482587	
mm_161081.1	chr12	84069268	84069468	+	1	NA	NA	NA	43	NM_145444	217698	Mm.484019	NM_145444	ENSMUSG00000042540	Acot5	BC016076|PTE-Ic	acyl-CoA thioesterase 5	protein-coding	0.035000	0.442786	
mm_38781.1	chr4	148075348	148075548	-	1	NA	NA	NA	12616	NM_009642	11610	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.075000	0.542289	
mm_102867.1	chr11	69406663	69406863	-	1	NA	NA	NA	6912	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.035000	0.651741	
mm_10817.1	chr2	24350324	24350524	+	1	NA	NA	NA	5053	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.005000	0.373134	
mm_1507.1	chr1	72307397	72307597	+	1	NA	NA	NA	76	NM_009533	22596	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.060000	0.577114	
mm_134862.1	chr16	28446899	28447099	-	1	NA	NA	NA	-924	NM_001276420	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.045000	0.621891	-39(CTCCTTAAGAGC,-,0.00),-38(TCCTTAAGAGCC,+,0.00)
mm_60077.1	chr7	34021451	34021651	+	1	NA	NA	NA	-16	NM_009596	11354	Mm.8025	NM_009596	ENSMUSG00000066583	Scgb1b27	Abp|Abpa|Abpa27|Sal-1|Tcp	secretoglobin, family 1B, member 27	protein-coding	0.005000	0.542289	-31(AGTTATAAAAGG,-,0.00)
mm_114134.1	chr13	55220562	55220762	+	1	NA	NA	NA	10880	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.005000	0.398010	
mm_86830.1	chr10	21192079	21192279	+	1	NA	NA	NA	-31195	NM_010848	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.005000	0.487562	
mm_88167.1	chr10	69746922	69747122	+	1	NA	NA	NA	-178510	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.005000	0.517413	
mm_61596.1	chr7	80026077	80026277	+	1	NA	NA	NA	-51	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.030000	0.537313	
mm_164044.1	chr14	94124000	94124200	+	1	NA	NA	NA	-233421	NM_001346722	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.228856	
mm_142679.1	chr17	47732384	47732584	-	1	NA	NA	NA	-4553	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.045000	0.601990	
mm_31218.1	chr4	44004347	44004547	+	1	NA	NA	NA	-8196	NM_016760	12757	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.005000	0.492537	-38(CCATTTCAAGGC,+,0.00)
mm_47608.1	chr5	125106235	125106435	-	1	NA	NA	NA	72879	NM_001253905	20602	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.050000	0.601990	
mm_74642.1	chr8	13254158	13254358	-	1	NA	NA	NA	-96	NM_172750	234072	Mm.132785	NM_172750	ENSMUSG00000031448	Adprhl1	Arh2|D330008N11Rik	ADP-ribosylhydrolase like 1	protein-coding	0.020000	0.606965	
mm_27417.1	chr3	51408855	51409055	-	1	NA	NA	NA	0	NM_025523	66377	Mm.331007	NM_025523	ENSMUSG00000037152	Ndufc1	2310016K22Rik|KFYI	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1	protein-coding	0.115000	0.696517	
mm_168277.1	chr1	103419785	103419985	-	1	NA	NA	NA	-1348934	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding	0.035000	0.547264	
mm_86708.1	chr10	18844979	18845179	+	1	NA	NA	NA	8	NM_022032	64058	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	0.130000	0.746269	
mm_57640.1	chr6	128362794	128362994	-	1	NA	NA	NA	17	NM_001326585	72440	Mm.143908	NM_197981	ENSMUSG00000048668	Rhno1	2510047L19Rik|5930416I19Rik	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding	0.165000	0.736318	
mm_41325.1	chr5	90472492	90472692	+	1	NA	NA	NA	11722	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.472637	
mm_141468.1	chr17	30602223	30602423	-	1	NA	NA	NA	10336	NM_025374	109801	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding	0.040000	0.492537	85(TCTTTTATGGAG,+,0.00)
mm_3876.1	chr1	161001728	161001928	+	1	NA	NA	NA	23222	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.000000	0.383085	
mm_145049.1	chr18	40256776	40256976	+	1	NA	NA	NA	-86	NR_045177	73001	Mm.428647	NR_045177	ENSMUSG00000071860	2900055J20Rik	-	RIKEN cDNA 2900055J20 gene	ncRNA	0.075000	0.636816	
mm_6014.1	chr1	59014000	59014200	-	1	NA	NA	NA	40529	NM_172656	227154	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	0.005000	0.318408	
mm_112776.1	chr13	20090203	20090403	+	1	NA	NA	NA	-204	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.035000	0.522388	
mm_109175.1	chr12	108410544	108410744	+	1	NA	NA	NA	11	NM_001286347	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.015000	0.597015	
mm_14686.1	chr2	140170930	140171130	+	1	NA	NA	NA	384	NM_027093	69487	Mm.287921	NM_027093	ENSMUSG00000027384	Ndufaf5	2310003L22Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 5	protein-coding	0.055000	0.577114	
mm_135688.1	chr16	52427428	52427628	-	1	NA	NA	NA	25553	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.368159	
mm_150277.1	chr19	34248403	34248603	+	1	NA	NA	NA	6870	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.025000	0.512438	
mm_39988.1	chr5	32490905	32491105	+	1	NA	NA	NA	32035	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.020000	0.348259	
mm_86002.1	chr9	112232315	112232515	-	1	NA	NA	NA	86	NM_001177616	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.020000	0.517413	
mm_46818.1	chr5	113138453	113138653	-	1	NA	NA	NA	32	NM_001347397	243219	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.065000	0.691542	
mm_27431.1	chr3	51559527	51559727	-	1	NA	NA	NA	-130	NR_033624	100039684	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	0.065000	0.467662	
mm_18114.1	chr2	44996374	44996574	-	1	NA	NA	NA	26703	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.015000	0.417910	
mm_95901.1	chr11	58202433	58202633	+	1	NA	NA	NA	2977	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.005000	0.407960	
mm_4376.1	chr1	172147943	172148143	+	1	NA	NA	NA	28	NM_153555	98193	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	0.140000	0.721393	
mm_122838.1	chr14	54723944	54724144	-	1	NA	NA	NA	-11870	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.010000	0.567164	
mm_32943.1	chr4	119520857	119521057	+	1	NA	NA	NA	17812	NM_001004178	433752	Mm.425205	NM_001004178	ENSMUSG00000087385	AA415398	-	expressed sequence AA415398	protein-coding	0.015000	0.487562	
mm_73026.1	chr8	94152928	94153128	+	1	NA	NA	NA	421	NM_013603	17751	Mm.2064	NM_013603	ENSMUSG00000031760	Mt3	Mt-3	metallothionein 3	protein-coding	0.020000	0.527363	
mm_37752.1	chr4	129640537	129640737	-	1	NA	NA	NA	168	NM_001005506	109658	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	0.085000	0.626866	
mm_53955.1	chr6	5325181	5325381	-	1	NA	NA	NA	-26908	NM_183308	330260	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	0.005000	0.527363	
mm_161628.1	chr16	84834811	84835011	-	1	NA	NA	NA	87	NM_001302216	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.105000	0.656716	
mm_171071.1	chr3	115915808	115916008	+	1	NA	NA	NA	27725	NM_027193	69740	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	0.005000	0.462687	
mm_97088.1	chr11	73138265	73138465	+	1	NA	NA	NA	-71	NM_010353	14841	Mm.42045	NM_010353	ENSMUSG00000050107	Gsg2	Haspin	germ cell associated 2, haspin	protein-coding	0.110000	0.696517	
mm_160714.1	chr10	61299645	61299845	+	1	NA	NA	NA	1909	NM_011073	18646	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	0.020000	0.467662	
mm_172297.1	chr7	100987101	100987301	+	1	NA	NA	NA	-22835	NM_183168	233571	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.005000	0.402985	
mm_16394.1	chr2	179414854	179415054	+	1	NA	NA	NA	18	NM_026596	68175	Mm.158187	NM_026596		4930591A17Rik	-	RIKEN cDNA 4930591A17 gene	protein-coding	0.025000	0.537313	
mm_5579.1	chr1	39551899	39552099	-	1	NA	NA	NA	-3159	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.040000	0.552239	
mm_168175.1	chr10	56377173	56377373	+	1	NA	NA	NA	-27	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.025000	0.517413	25(ACTTTTAAAAGC,-,0.00),26(CTTTTAAAAGCT,+,0.00)
mm_94320.1	chr11	4236765	4236965	+	1	NA	NA	NA	80	NM_001013365	18413	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.035000	0.597015	
mm_120509.1	chr14	66344215	66344415	+	1	NA	NA	NA	19	NM_019675	56471	Mm.35474	NM_019675	ENSMUSG00000022044	Stmn4	Lagl|R75359|RB3	stathmin-like 4	protein-coding	0.025000	0.542289	
mm_85385.1	chr9	103227917	103228117	-	1	NA	NA	NA	2269	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.055000	0.592040	
mm_66997.1	chr7	64392137	64392337	-	1	NA	NA	NA	-1	NM_026483	67973	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	0.095000	0.597015	
mm_54840.1	chr6	42586306	42586506	-	1	NA	NA	NA	10966	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.402985	
mm_9018.1	chr1	166127813	166128013	-	1	NA	NA	NA	-15	NM_001160049	240892	Mm.35315	NM_001033344	ENSMUSG00000026564	Dusp27	C130085G02Rik|Gm209	dual specificity phosphatase 27 (putative)	protein-coding	0.005000	0.512438	
mm_2023.1	chr1	87128103	87128303	+	1	NA	NA	NA	3195	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.010000	0.557214	
mm_24294.1	chr3	89293800	89294000	+	1	NA	NA	NA	-12949	NM_001162425	13636	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0.015000	0.482587	-1(TGCTTTTAGAGG,-,0.00),0(GCTTTTAGAGGG,+,0.00)
mm_80819.1	chr9	96705720	96705920	+	1	NA	NA	NA	25855	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.030000	0.547264	
mm_105534.1	chr11	106301108	106301308	-	1	NA	NA	NA	688	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.025000	0.557214	
mm_73759.1	chr8	115134325	115134525	+	1	NA	NA	NA	572469	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.015000	0.462687	
mm_116758.1	chr13	52531177	52531377	-	1	NA	NA	NA	-441	NM_001024474	68203	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0.040000	0.497512	
mm_84078.1	chr9	58201939	58202139	-	1	NA	NA	NA	-240	NM_001161540	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.080000	0.562189	-66(GTGTTTAAAGGC,-,0.00)
mm_35000.1	chr4	156199430	156199630	+	1	NA	NA	NA	1288	NM_015783	100038882	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	0.010000	0.447761	19(TCTTTTATAACC,+,0.00)
mm_87328.1	chr10	42897825	42898025	+	1	NA	NA	NA	37413	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.020000	0.542289	
mm_26852.1	chr3	14778359	14778559	-	1	NA	NA	NA	1	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.000000	0.383085	-35(TTCTATAAAAGC,-,0.00)
mm_112371.1	chr12	119197135	119197335	-	1	NA	NA	NA	41041	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.005000	0.368159	
mm_45607.1	chr5	75044603	75044803	-	1	NA	NA	NA	-62	NM_028850	74277	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	0.190000	0.810945	
mm_65312.1	chr7	24780816	24781016	-	1	NA	NA	NA	3712	NM_007675	26366	Mm.30300	NM_007675	ENSMUSG00000054169	Ceacam10	Bgp3|Cea10	carcinoembryonic antigen-related cell adhesion molecule 10	protein-coding	0.040000	0.512438	
mm_127486.1	chr15	101293103	101293303	+	1	NA	NA	NA	-9	NR_033803	77717	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.025000	0.631841	
mm_40658.1	chr5	65154885	65155085	+	1	NA	NA	NA	23754	NM_175174	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.000000	0.422886	
mm_152498.1	chr19	11130681	11130881	-	1	NA	NA	NA	97	NM_027058	69369	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0.030000	0.577114	
mm_157819.1	chrX	74059268	74059468	-	1	NA	NA	NA	26322	NM_010788	17257	Mm.131408	NM_010788	ENSMUSG00000031393	Mecp2	1500041B07Rik|D630021H01Rik|Mbd5|WBP10	methyl CpG binding protein 2	protein-coding	0.005000	0.308458	
mm_138177.1	chr17	34264903	34265103	+	1	NA	NA	NA	1776	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.125000	0.731343	
mm_143216.1	chr17	62882617	62882817	-	1	NA	NA	NA	-1400	NM_010109	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.045000	0.462687	
mm_100797.1	chr11	4943829	4944029	-	1	NA	NA	NA	-3592	NM_001243043	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.025000	0.547264	
mm_46892.1	chr5	113992309	113992509	-	1	NA	NA	NA	1348	NM_198109	231637	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot homolog 1 (Drosophila)	protein-coding	0.025000	0.477612	
mm_124868.1	chr15	10177539	10177739	+	1	NA	NA	NA	401	NM_011169	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.035000	0.537313	
mm_41488.1	chr5	92127244	92127444	+	1	NA	NA	NA	-10594	NM_019490	56041	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0.025000	0.537313	
mm_33167.1	chr4	126024428	126024628	+	1	NA	NA	NA	-131	NR_045561	12986	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.020000	0.606965	
mm_121884.1	chr14	21714477	21714677	-	1	NA	NA	NA	-1	NM_001013826	435391	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0.010000	0.542289	
mm_52277.1	chr6	108659566	108659766	+	1	NA	NA	NA	-963	NM_011498	20893	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0.070000	0.711443	
mm_44268.1	chr5	5664088	5664288	-	1	NA	NA	NA	44	NM_172447	207686	Mm.319007	NM_172447	ENSMUSG00000040473	Cfap69	4921525K03|A330021E22Rik|AI427898	cilia and flagella associated protein 69	protein-coding	0.060000	0.601990	
mm_89472.1	chr10	93504238	93504438	+	1	NA	NA	NA	15570	NM_010401	15109	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	0.010000	0.343284	
mm_146126.1	chr18	74489162	74489362	+	1	NA	NA	NA	41862	NR_045368	73606	Mm.444734	NR_045368		1700120E14Rik	-	RIKEN cDNA 1700120E14 gene	ncRNA	0.005000	0.402985	-56(CCCTTTAAGGAC,+,0.00)
mm_536.1	chr1	37997910	37998110	+	1	NA	NA	NA	0	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.145000	0.706468	
mm_35100.1	chr4	8926646	8926846	-	1	NA	NA	NA	236340	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.020000	0.517413	
mm_25794.1	chr3	127553387	127553587	+	1	NA	NA	NA	-2	NM_197997	71643	Mm.274884	NM_197997	ENSMUSG00000051278	Zgrf1	4930422G04Rik|AI448607	zinc finger, GRF-type containing 1	protein-coding	0.095000	0.592040	
mm_154773.1	chrX	12652179	12652379	+	1	NA	NA	NA	396	NM_001101484	245347	Mm.327568	NM_001101484		Gm4984	AI428901|EG245347	predicted pseudogene 4984	protein-coding	0.050000	0.522388	
mm_168408.1	chr11	30699075	30699275	-	1	NA	NA	NA	-49779	NM_029344	75572	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	0.005000	0.462687	
mm_5734.1	chr1	45334701	45334901	-	1	NA	NA	NA	23263	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.000000	0.402985	
mm_232.1	chr1	19102937	19103137	+	1	NA	NA	NA	15	NM_153154	226896	Mm.244858	NM_153154	ENSMUSG00000042596	Tfap2d	Tcfap2d	transcription factor AP-2, delta	protein-coding	0.020000	0.407960	
mm_24806.1	chr3	95556214	95556414	+	1	NA	NA	NA	-3363	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.005000	0.328358	
mm_157269.1	chrX	19237751	19237951	-	1	NA	NA	NA	-90880	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.075000	0.651741	
mm_32230.1	chr4	102235453	102235653	+	1	NA	NA	NA	-19189	NM_001177983	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.015000	0.412935	-33(TCTTTAATAGCT,+,0.00),-15(GCTTTTAGAGTT,+,0.00)
mm_138937.1	chr17	43952954	43953154	+	1	NA	NA	NA	55	NM_001286654	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.030000	0.467662	
mm_95270.1	chr11	45673099	45673299	+	1	NA	NA	NA	-134884	NR_045876	100009664	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.000000	0.502488	
mm_67563.1	chr7	81863219	81863419	-	1	NA	NA	NA	632	NM_001291282	107769	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.035000	0.592040	
mm_20923.1	chr2	150842276	150842476	-	1	NA	NA	NA	55580	NM_153781	110078	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.015000	0.517413	
mm_97980.1	chr11	83882645	83882845	+	1	NA	NA	NA	29785	NM_001291269	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.020000	0.537313	
mm_17288.1	chr2	26204484	26204684	-	1	NA	NA	NA	1991	NM_001039653	16871	Mm.386765	NM_010711	ENSMUSG00000026934	Lhx3	Lim3|P-LIM|mLIM3|mLim-3	LIM homeobox protein 3	protein-coding	0.010000	0.457711	
mm_74581.1	chr8	11267538	11267738	-	1	NA	NA	NA	-45167	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.010000	0.447761	
mm_72351.1	chr8	79640132	79640332	+	1	NA	NA	NA	556	NM_001081164	73945	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.105000	0.641791	
mm_24639.1	chr3	94377316	94377516	+	1	NA	NA	NA	-16	NM_001293734	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.015000	0.626866	
mm_36741.1	chr4	99829086	99829286	-	1	NA	NA	NA	-68	NM_026348	67733	Mm.257094	NM_026348	ENSMUSG00000028549	Itgb3bp	4930471O16Rik|AU022583	integrin beta 3 binding protein (beta3-endonexin)	protein-coding	0.080000	0.557214	36(GGCTTTTTATGC,-,0.00)
mm_60789.1	chr7	45566988	45567188	+	1	NA	NA	NA	-3065	NM_009737	12036	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.020000	0.552239	25(TCCTATAAAAAC,-,0.00)
mm_148114.1	chr18	74778678	74778878	-	1	NA	NA	NA	-323	NR_028560	100217466		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	0.090000	0.721393	
mm_24231.1	chr3	88950338	88950538	+	1	NA	NA	NA	-156	NM_001164533	65111	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0.145000	0.761194	
mm_35795.1	chr4	46536039	46536239	-	1	NA	NA	NA	2	NM_029077	74735	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	0.080000	0.661692	
mm_97461.1	chr11	78245897	78246097	+	1	NA	NA	NA	251	NM_009143	20316	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	0.050000	0.507463	
mm_16565.1	chr2	3366470	3366670	-	1	NA	NA	NA	-1	NM_145921	99035	Mm.13808	NM_145921	ENSMUSG00000026645	Olah	AI607300|E230009B14Rik|Thedc1	oleoyl-ACP hydrolase	protein-coding	0.035000	0.512438	
mm_172179.1	chr6	49236394	49236594	-	1	NA	NA	NA	-21540	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.030000	0.482587	
mm_67485.1	chr7	80713471	80713671	-	1	NA	NA	NA	-24694	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.005000	0.427861	
mm_34823.1	chr4	154964032	154964232	+	1	NA	NA	NA	9	NR_131230	269614	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	0.095000	0.592040	
mm_20845.1	chr2	148040104	148040304	-	1	NA	NA	NA	5260	NM_001291067	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.085000	0.616915	
mm_38121.1	chr4	134548121	134548321	-	1	NA	NA	NA	3945	NM_029100	74777	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	0.035000	0.527363	
mm_123360.1	chr14	63142866	63143066	-	1	NA	NA	NA	20504	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.393035	
mm_99586.1	chr11	104296366	104296566	+	1	NA	NA	NA	65030	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.015000	0.462687	
mm_42268.1	chr5	114143376	114143576	+	1	NA	NA	NA	12320	NM_011677	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.020000	0.487562	
mm_133621.1	chr16	91561637	91561837	+	1	NA	NA	NA	14643	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.080000	0.592040	
mm_123651.1	chr14	69171757	69171957	-	1	NA	NA	NA	-14	NR_045931	73554	Mm.320005	NR_045931	ENSMUSG00000092499	1700092C10Rik	-	RIKEN cDNA 1700092C10 gene	ncRNA	0.035000	0.562189	
mm_57183.1	chr6	122848637	122848837	-	1	NA	NA	NA	7420	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.015000	0.378109	
mm_34779.1	chr4	154025941	154026141	+	1	NA	NA	NA	3	NM_001163722	68859	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	0.045000	0.681592	
mm_122706.1	chr14	52197062	52197262	-	1	NA	NA	NA	77	NM_033618	114741	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	0.120000	0.666667	
mm_53617.1	chr6	140423836	140424036	+	1	NA	NA	NA	-163	NM_144920	109135	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.200000	0.850746	
mm_15210.1	chr2	154213970	154214170	+	1	NA	NA	NA	-9672	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.025000	0.562189	
mm_49769.1	chr6	34864992	34865192	+	1	NA	NA	NA	1946	NM_197986	68487	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.000000	0.328358	
mm_93029.1	chr10	88135727	88135927	-	1	NA	NA	NA	11114	NM_029249	75317	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	0.050000	0.532338	29(TGCTTTAAAAAA,-,0.00)
mm_33380.1	chr4	129556714	129556914	+	1	NA	NA	NA	997	NR_106199	102465997		NR_106199	ENSMUSG00000099070	Mir8119	Gm27567|mmu-mir-8119	microRNA 8119	ncRNA	0.025000	0.437811	-68(AACTATATAAGG,-,0.00),88(AGGTTTAAAAGC,-,0.00)
mm_136961.1	chr17	15500064	15500264	+	1	NA	NA	NA	276	NM_013684	21374	Mm.244820	NM_013684	ENSMUSG00000014767	Tbp	GTF2D1|Gtf2d|SCA17|TFIID	TATA box binding protein	protein-coding	0.130000	0.706468	
mm_6928.1	chr1	84868878	84869078	-	1	NA	NA	NA	29137	NM_025386	66153	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.020000	0.532338	
mm_57921.1	chr6	134045541	134045741	-	1	NA	NA	NA	9941	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.015000	0.412935	
mm_73880.1	chr8	119344446	119344646	+	1	NA	NA	NA	8	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.095000	0.631841	86(CCTCATATGGGC,+,0.00)
mm_96194.1	chr11	61984500	61984700	+	1	NA	NA	NA	27837	NM_001310526	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.005000	0.393035	
mm_54910.1	chr6	47780585	47780785	-	1	NA	NA	NA	22967	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.005000	0.407960	
mm_44599.1	chr5	25100126	25100326	-	1	NA	NA	NA	416	NM_145401	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.085000	0.646766	
mm_169653.1	chr15	55644764	55644964	-	1	NA	NA	NA	87456	NM_001168250	105837	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0.000000	0.542289	
mm_12579.1	chr2	73274640	73274840	+	1	NA	NA	NA	2814	NM_001005343	381373	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0.080000	0.646766	
mm_167668.1	chr9	73125158	73125358	+	1	NA	NA	NA	11789	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0.025000	0.547264	
mm_16633.1	chr2	5714414	5714614	-	1	NA	NA	NA	248	NM_001290374	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.075000	0.716418	
mm_116900.1	chr13	55415134	55415334	-	1	NA	NA	NA	-2	NM_029303	75477	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	0.040000	0.567164	
mm_116383.1	chr13	41079511	41079711	-	1	NA	NA	NA	95	NM_001145803	17152	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	0.120000	0.686567	
mm_163588.1	chr13	38191698	38191898	-	1	NA	NA	NA	-13141	NM_026382	67797	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	0.015000	0.492537	
mm_80193.1	chr9	72396169	72396369	+	1	NA	NA	NA	-42260	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.005000	0.497512	
mm_62860.1	chr7	114717185	114717385	+	1	NA	NA	NA	-1358	NM_054084	116903	Mm.273838	NM_054084	ENSMUSG00000030666	Calcb	CGRP2|Calc2	calcitonin-related polypeptide, beta	protein-coding	0.000000	0.507463	
mm_41598.1	chr5	96160661	96160861	+	1	NA	NA	NA	786	NM_001285511	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.015000	0.487562	
mm_149097.1	chr19	8939458	8939658	+	1	NA	NA	NA	-2362	NM_011842	23942	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	0.005000	0.388060	
mm_136302.1	chr16	91549656	91549856	-	1	NA	NA	NA	2662	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.005000	0.412935	
mm_146653.1	chr18	11051451	11051651	-	1	NA	NA	NA	-959	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.035000	0.502488	
mm_140143.1	chr17	79999814	80000014	+	1	NA	NA	NA	62354	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.035000	0.547264	
mm_123647.1	chr14	68655711	68655911	-	1	NA	NA	NA	31	NM_010082	13522	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	0.020000	0.542289	45(TCCCTTAAGAGG,-,0.00),46(CCCTTAAGAGGA,+,0.00)
mm_160464.1	chr8	110725657	110725857	+	1	NA	NA	NA	31	NM_001310591	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.010000	0.616915	
mm_65618.1	chr7	27535223	27535423	-	1	NA	NA	NA	12062	NM_001033315	233020	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.020000	0.462687	
mm_26206.1	chr3	138550522	138550722	+	1	NA	NA	NA	23354	NM_001313980	13684	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.015000	0.378109	17(GCTTCTAAAAGG,-,0.00)
mm_73329.1	chr8	105289896	105290096	+	1	NA	NA	NA	-468	NM_028888	74356	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0.085000	0.636816	
mm_77005.1	chr8	107424943	107425143	-	1	NA	NA	NA	-5	NM_026277	67619	Mm.36817	NM_026277	ENSMUSG00000003848	Nob1	1700021I09Rik|ART-4|Nob1p|Psmd8bp1	NIN1/RPN12 binding protein 1 homolog	protein-coding	0.095000	0.641791	
mm_152612.1	chr19	11965043	11965243	-	1	NA	NA	NA	-701	NM_001033174	76303	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.015000	0.457711	-34(CTCTATAAATGC,-,0.00)
mm_139287.1	chr17	48300260	48300460	+	1	NA	NA	NA	322	NM_001033405	328833	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0.020000	0.597015	
mm_95247.1	chr11	44618030	44618230	+	1	NA	NA	NA	30	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.030000	0.368159	
mm_156998.1	chrX	7567470	7567670	-	1	NA	NA	NA	-6030	NR_029473	78185	Mm.160055	NR_029473	ENSMUSG00000039545	Ppp1r3fos	4930524L23Rik	protein phosphatase 1, regulatory subunit 3F, opposite strand	ncRNA	0.025000	0.507463	
mm_28573.1	chr3	93445203	93445403	-	1	NA	NA	NA	2973	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.070000	0.582090	
mm_36765.1	chr4	101356692	101356892	-	1	NA	NA	NA	-544	NR_040708	77866	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0.045000	0.482587	
mm_88483.1	chr10	77630044	77630244	+	1	NA	NA	NA	7823	NM_019803	22213	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0.000000	0.527363	
mm_14674.1	chr2	139494047	139494247	+	1	NA	NA	NA	227	NM_175467	228677	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	0.020000	0.467662	-56(TTCCTTTAAAGG,-,0.00),-55(TCCTTTAAAGGC,+,0.00),-55(TCCTTTAAAGGC,-,0.00),-54(CCTTTAAAGGCT,+,0.00)
mm_103724.1	chr11	79530425	79530625	-	1	NA	NA	NA	84	NM_146023	101488212	Mm.439665	NM_146023	ENSMUSG00000070354	Gm21975	Evi2a-evi2b	predicted gene 21975	protein-coding	0.015000	0.427861	44(CTCTTTAAAAAA,-,0.00)
mm_55671.1	chr6	72522481	72522681	-	1	NA	NA	NA	-21810	NM_007599	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.020000	0.432836	
mm_131503.1	chr16	17419242	17419442	+	1	NA	NA	NA	-13028	NM_001001983	224020	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase, catalytic, alpha polypeptide	protein-coding	0.015000	0.467662	
mm_133849.1	chr16	96206260	96206460	+	1	NA	NA	NA	5890	NM_015825	50795	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0.025000	0.477612	
mm_170730.1	chr2	151352942	151353142	+	1	NA	NA	NA	51003	NR_040747	74660	Mm.170672	NR_040747	ENSMUSG00000087609	4930442J19Rik	1700029E19Rik|Gm14152|OTTMUSG00000015807	RIKEN cDNA 4930442J19 gene	ncRNA	0.030000	0.557214	
mm_20871.1	chr2	148443463	148443663	-	1	NA	NA	NA	-28	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.035000	0.567164	
mm_332.1	chr1	26616928	26617128	+	1	NA	NA	NA	70432	NM_001033764	210940	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	0.015000	0.427861	
mm_15790.1	chr2	164425683	164425883	+	1	NA	NA	NA	17405	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.000000	0.427861	
mm_134779.1	chr16	23981101	23981301	-	1	NA	NA	NA	7411	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.055000	0.542289	
mm_145333.1	chr18	56400240	56400440	+	1	NA	NA	NA	-31792	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.015000	0.427861	
mm_70056.1	chr7	142651290	142651490	-	1	NA	NA	NA	3606	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.020000	0.626866	
mm_94885.1	chr11	26816202	26816402	+	1	NA	NA	NA	31194	NR_002890	654472	Mm.347777	NR_002890		Gm12070	OTTMUSG00000005300	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.005000	0.422886	
mm_74240.1	chr8	124722066	124722266	+	1	NA	NA	NA	27	NM_026855	68865	Mm.22779	NM_026855	ENSMUSG00000031982	Arv1	1110067L22Rik|AI461928|AW121084	ARV1 homolog, fatty acid homeostasis modulator	protein-coding	0.080000	0.661692	
mm_61431.1	chr7	73771945	73772145	+	1	NA	NA	NA	31738	NM_001162532	100038347	Mm.425464	NM_001162532	ENSMUSG00000078670	Fam174b	-	family with sequence similarity 174, member B	protein-coding	0.015000	0.318408	
mm_83395.1	chr9	44718677	44718877	-	1	NA	NA	NA	16421	NM_153537	102693	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.020000	0.437811	
mm_53102.1	chr6	125067594	125067794	+	1	NA	NA	NA	-226	NM_001163269	381810	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0.020000	0.512438	44(GGCTTTTAGAGC,-,0.00),45(GCTTTTAGAGCT,+,0.00)
mm_40456.1	chr5	53604060	53604260	+	1	NA	NA	NA	13674	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.000000	0.233831	
mm_1847.1	chr1	83015266	83015466	+	1	NA	NA	NA	23082	NM_030556	80721	Mm.261542	NM_030556	ENSMUSG00000038496	Slc19a3	A230084E24Rik|AI788884|ThTr2	solute carrier family 19, member 3	protein-coding	0.010000	0.447761	-74(TTTTATAAAGCC,+,0.00)
mm_141331.1	chr17	28486029	28486229	-	1	NA	NA	NA	20	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.170000	0.796020	
mm_110317.1	chr12	34528818	34529018	-	1	NA	NA	NA	-29	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.010000	0.492537	
mm_155342.1	chrX	68678448	68678648	+	1	NA	NA	NA	7	NM_001290424	14265	Mm.3451	NM_008031	ENSMUSG00000000838	Fmr1	FMRP|Fmr-1	fragile X mental retardation syndrome 1	protein-coding	0.100000	0.691542	
mm_151329.1	chr19	55894258	55894458	+	1	NA	NA	NA	-963	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.010000	0.363184	
mm_94567.1	chr11	11686210	11686410	+	1	NA	NA	NA	385	NM_001025597	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.095000	0.686567	
mm_16534.1	chr2	181579417	181579617	+	1	NA	NA	NA	-15	NR_027290	100271841	Mm.438007	NR_027289	ENSMUSG00000010492	Uckl1os	Gm16119|OTTMUSG00000030649	uridine-cytidine kinase 1-like 1, opposite strand	ncRNA	0.005000	0.522388	
mm_100417.1	chr11	119430188	119430388	+	1	NA	NA	NA	39816	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.010000	0.472637	
mm_35605.1	chr4	43046045	43046245	-	1	NA	NA	NA	75	NR_045567	230088	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0.075000	0.661692	
mm_6774.1	chr1	84131726	84131926	-	1	NA	NA	NA	87135	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.487562	
mm_51728.1	chr6	87009142	87009342	+	1	NA	NA	NA	-594	NM_001170591	56748	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	0.015000	0.472637	
mm_37604.1	chr4	126752921	126753121	-	1	NA	NA	NA	408	NM_011986	26562	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	0.065000	0.562189	
mm_53260.1	chr6	127913621	127913821	+	1	NA	NA	NA	26099	NM_026743	68498	Mm.174368	NM_026743	ENSMUSG00000030351	Tspan11	1110014F12Rik|AU067806	tetraspanin 11	protein-coding	0.015000	0.482587	
mm_146384.1	chr18	82669065	82669265	+	1	NA	NA	NA	23569	NM_177832	329002	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.005000	0.562189	
mm_95274.1	chr11	45851876	45852076	+	1	NA	NA	NA	12	NM_001045520	216705	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.170000	0.771144	
mm_49521.1	chr6	29916917	29917117	+	1	NA	NA	NA	4	NR_104576	320609	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0.105000	0.711443	
mm_65429.1	chr7	25297886	25298086	-	1	NA	NA	NA	-31	NM_008776	18476	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	0.035000	0.542289	
mm_33697.1	chr4	133584243	133584443	+	1	NA	NA	NA	-30	NM_001290742	100210	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	0.065000	0.557214	
mm_4149.1	chr1	171018802	171019002	+	1	NA	NA	NA	-24	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.005000	0.497512	24(GGCCCTTAAGGG,-,0.00)
mm_44000.1	chr5	146845019	146845219	+	1	NA	NA	NA	48	NM_026864	68895	Mm.266978	NM_026864	ENSMUSG00000029641	Rasl11a	1110065D03Rik|AI852031	RAS-like, family 11, member A	protein-coding	0.110000	0.696517	
mm_81059.1	chr9	106148602	106148802	+	1	NA	NA	NA	-5422	NR_029549	387153		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	0.050000	0.661692	
mm_120905.1	chr14	76026008	76026208	+	1	NA	NA	NA	-15243	NM_026816	68705	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	0.020000	0.462687	
mm_7451.1	chr1	120265176	120265376	-	1	NA	NA	NA	4	NM_133186	68428	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.085000	0.716418	
mm_165653.1	chr3	83862932	83863132	-	1	NA	NA	NA	-21424	NM_011905	24088	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.015000	0.532338	
mm_121375.1	chr14	118543145	118543345	+	1	NA	NA	NA	49227	NR_105815	102465208		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0.025000	0.567164	-35(TTCTATAAAAGC,-,0.00)
mm_2603.1	chr1	120055154	120055354	+	1	NA	NA	NA	18526	NM_019432	170706	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0.010000	0.507463	
mm_115265.1	chr13	110683572	110683772	+	1	NA	NA	NA	-219827	NR_131193	75139	Mm.490931	NR_131193		Gm38397	-	predicted gene, 38397	ncRNA	0.025000	0.432836	
mm_145131.1	chr18	44662019	44662219	+	1	NA	NA	NA	147	NM_001085374	328949	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0.115000	0.691542	
mm_123494.1	chr14	66163813	66164013	-	1	NA	NA	NA	22953	NM_144803	110902	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	0.000000	0.398010	
mm_173150.1	chrX	32209321	32209521	+	1	NA	NA	NA	-68973	NM_001168334	100040482	Mm.479861	NM_001168334	ENSMUSG00000096194	Btbd35f2	Gm2799	BTB domain containing 35, family member 2	protein-coding	0.040000	0.512438	-27(TTCTATAAAAGT,-,0.00)
mm_131671.1	chr16	20672790	20672990	+	1	NA	NA	NA	163	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.130000	0.756219	
mm_65465.1	chr7	25476316	25476516	-	1	NA	NA	NA	1209	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.045000	0.427861	
mm_2169.1	chr1	88259282	88259482	+	1	NA	NA	NA	10026	NR_040291	78605	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.005000	0.567164	
mm_116229.1	chr13	33158268	33158468	-	1	NA	NA	NA	-17	NM_011453	20707	Mm.219429	NM_011453	ENSMUSG00000021404	Serpinb9c	3830421J05Rik|Nk9|Spi11	serine (or cysteine) peptidase inhibitor, clade B, member 9c	protein-coding	0.025000	0.492537	
mm_79796.1	chr9	64092239	64092439	+	1	NA	NA	NA	11578	NR_040743	76814	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.015000	0.512438	
mm_52928.1	chr6	122923601	122923801	+	1	NA	NA	NA	1853	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.010000	0.407960	28(CTCCATAAAAGG,-,0.00),30(CCATAAAAGGGC,+,0.00)
mm_168760.1	chr12	118683314	118683514	+	1	NA	NA	NA	-153221	NR_045947	100384890	Mm.484658	NR_045947		D230030E09Rik	Npe	Riken cDNA D230030E09 gene	ncRNA	0.025000	0.472637	
mm_121260.1	chr14	103070146	103070346	+	1	NA	NA	NA	30	NM_001033242	211286	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0.150000	0.766169	
mm_115634.1	chr13	12200390	12200590	-	1	NA	NA	NA	-14002	NR_045170	328186	Mm.188154	NM_183202		Gm10336	B330003H21|ENSMUSG00000071543	predicted gene 10336	ncRNA	0.015000	0.472637	
mm_88198.1	chr10	70097183	70097383	+	1	NA	NA	NA	162	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.205000	0.840796	
mm_127702.1	chr15	102990879	102991079	+	1	NA	NA	NA	440	NM_010466	15426	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.090000	0.636816	
mm_122618.1	chr14	51145331	51145531	-	1	NA	NA	NA	1336	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.005000	0.472637	
mm_172237.1	chr6	68251617	68251817	+	1	NA	NA	NA	-686018	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.030000	0.422886	
mm_140120.1	chr17	78989233	78989433	+	1	NA	NA	NA	19172	NM_001171005	75292	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	0.020000	0.467662	
mm_167598.1	chr9	50493953	50494153	+	1	NA	NA	NA	-472	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.000000	0.432836	
mm_7034.1	chr1	87100087	87100287	-	1	NA	NA	NA	1419	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.015000	0.517413	
mm_42087.1	chr5	110230937	110231137	+	1	NA	NA	NA	33	NM_027922	71782	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	0.135000	0.736318	
mm_146457.1	chr18	86408438	86408638	+	1	NA	NA	NA	13586	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.005000	0.393035	
mm_160656.1	chr9	118150022	118150222	-	1	NA	NA	NA	74	NM_026442	67899	Mm.9953	NM_026442	ENSMUSG00000039163	Cmc1	2010110K16Rik|2010312P05Rik|AI596001	COX assembly mitochondrial protein 1	protein-coding	0.110000	0.706468	
mm_150428.1	chr19	37439681	37439881	+	1	NA	NA	NA	4940	NM_008245	15242	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0.045000	0.517413	
mm_12178.1	chr2	62968099	62968299	+	1	NA	NA	NA	216088	NM_133207	170738	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.015000	0.422886	
mm_105363.1	chr11	103174802	103175002	-	1	NA	NA	NA	3764	NM_019679	57778	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.020000	0.562189	
mm_104709.1	chr11	98026570	98026770	-	1	NA	NA	NA	-40	NM_001159483	19921	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0.095000	0.616915	
mm_90552.1	chr10	128099342	128099542	+	1	NA	NA	NA	6659	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.020000	0.442786	
mm_23235.1	chr3	50615948	50616148	+	1	NA	NA	NA	-172435	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.437811	-25(GTATTTAAAAAG,-,0.00)
mm_57626.1	chr6	128296998	128297198	-	1	NA	NA	NA	3715	NM_001080979	21679	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	0.015000	0.601990	85(CTGTCTTTAAGG,-,0.00)
mm_115360.1	chr13	112853142	112853342	+	1	NA	NA	NA	52465	NM_008247	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.010000	0.477612	
mm_8780.1	chr1	161241571	161241771	-	1	NA	NA	NA	9539	NR_130150	11758	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	0.045000	0.547264	
mm_26647.1	chr3	153973406	153973606	+	1	NA	NA	NA	70	NM_001081263	242259	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0.150000	0.800995	
mm_30379.1	chr3	152243757	152243957	-	1	NA	NA	NA	22463	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.020000	0.353234	
mm_138225.1	chr17	34347703	34347903	+	1	NA	NA	NA	-3158	NM_010381	100504404	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	0.010000	0.447761	
mm_7745.1	chr1	131056422	131056622	-	1	NA	NA	NA	36677	NM_010548	16153	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.030000	0.482587	
mm_117540.1	chr13	83609115	83609315	-	1	NA	NA	NA	35608	NM_001347569	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.000000	0.472637	
mm_68434.1	chr7	109893919	109894119	-	1	NA	NA	NA	-28340	NM_020052	56788	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	0.005000	0.388060	
mm_153641.1	chr19	44135749	44135949	-	1	NA	NA	NA	27	NM_001081077	72502	Mm.276109	NM_001081077	ENSMUSG00000025200	Cwf19l1	2610528C06Rik|AI854304|AV336991	CWF19-like 1, cell cycle control (S. pombe)	protein-coding	0.070000	0.557214	
mm_1404.1	chr1	67147801	67148001	+	1	NA	NA	NA	24874	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.010000	0.388060	
mm_7796.1	chr1	131525101	131525301	-	1	NA	NA	NA	2160	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.070000	0.646766	
mm_152693.1	chr19	16780970	16781170	-	1	NA	NA	NA	-137	NM_173028	271564	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.150000	0.711443	
mm_152602.1	chr19	11774843	11775043	-	1	NA	NA	NA	4528	NM_025606	94063	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	0.005000	0.437811	
mm_108707.1	chr12	87021279	87021479	+	1	NA	NA	NA	-5185	NM_172583	217733	Mm.110032	NM_172583	ENSMUSG00000034145	Tmem63c	4932420N09|9330187M14Rik	transmembrane protein 63c	protein-coding	0.010000	0.502488	
mm_7349.1	chr1	106515436	106515636	-	1	NA	NA	NA	31095	NR_106164	102466254		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.010000	0.487562	
mm_122172.1	chr14	31494873	31495073	-	1	NA	NA	NA	4	NM_025907	67011	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	0.050000	0.606965	
mm_111518.1	chr12	99883345	99883545	-	1	NA	NA	NA	-3	NM_030172	78767	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	0.085000	0.592040	
mm_105242.1	chr11	102319742	102319942	-	1	NA	NA	NA	-746	NM_011551	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.050000	0.457711	
mm_77538.1	chr8	123042138	123042338	-	1	NA	NA	NA	46	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.175000	0.805970	
mm_7243.1	chr1	93635527	93635727	-	1	NA	NA	NA	100	NM_021537	59041	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.115000	0.741294	
mm_125120.1	chr15	30172485	30172685	+	1	NA	NA	NA	-8	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.175000	0.776119	
mm_75569.1	chr8	60891358	60891558	-	1	NA	NA	NA	1007	NM_028299	72612	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.010000	0.422886	
mm_56146.1	chr6	87811687	87811887	-	1	NA	NA	NA	-8	NM_001039394	69834	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0.140000	0.791045	
mm_85865.1	chr9	110874012	110874212	-	1	NA	NA	NA	5971	NM_146260	20776	Mm.390229	NM_146260	ENSMUSG00000049555	Tmie	5131400L21Rik|Mm.87012|sr	transmembrane inner ear	protein-coding	0.045000	0.592040	
mm_11491.1	chr2	32452213	32452413	+	1	NA	NA	NA	-843	NM_146118	227731	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.045000	0.572139	14(CCCCCTAAAGGG,-,0.00)
mm_118616.1	chr14	21051737	21051937	+	1	NA	NA	NA	605	NM_018829	55946	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.030000	0.562189	-35(CACCCTATAAAG,-,0.00),-33(CCCTATAAAGAG,+,0.00),-33(CCCTATAAAGAG,-,0.00)
mm_5324.1	chr1	22806155	22806355	-	1	NA	NA	NA	-531	NM_001012624	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.080000	0.696517	
mm_80148.1	chr9	70914223	70914423	+	1	NA	NA	NA	20485	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.005000	0.452736	
mm_153689.1	chr19	44396919	44397119	-	1	NA	NA	NA	10690	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.402985	
mm_31309.1	chr4	46078850	46079050	+	1	NA	NA	NA	39728	NM_021883	21916	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0.005000	0.472637	
mm_113886.1	chr13	49188109	49188309	+	1	NA	NA	NA	662	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.050000	0.572139	
mm_21022.1	chr2	152398026	152398226	-	1	NA	NA	NA	-80	NM_011438	20667	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.180000	0.791045	
mm_27567.1	chr3	58622710	58622910	-	1	NA	NA	NA	14397	NM_001081262	545527	Mm.357722	NM_001081262	ENSMUSG00000070471	Erich6	4932431H17Rik|Fam194a	glutamate rich 6	protein-coding	0.005000	0.412935	
mm_17602.1	chr2	30828170	30828370	-	1	NA	NA	NA	30	NM_133346	72323	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	0.095000	0.666667	
mm_20376.1	chr2	128466373	128466573	-	1	NA	NA	NA	-37122	NR_028590	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.015000	0.522388	
mm_142001.1	chr17	35199322	35199522	-	1	NA	NA	NA	2585	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.040000	0.457711	
mm_166795.1	chr6	149401576	149401776	+	1	NA	NA	NA	-7308	NM_001112796	12121	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	bicaudal D homolog 1 (Drosophila)	protein-coding	0.025000	0.532338	
mm_83661.1	chr9	49568387	49568587	-	1	NA	NA	NA	50199	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.035000	0.507463	
mm_129126.1	chr15	76180578	76180778	-	1	NA	NA	NA	15032	NM_201394	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.060000	0.631841	
mm_84200.1	chr9	60649670	60649870	-	1	NA	NA	NA	37764	NM_001311095	102747	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0.040000	0.582090	
mm_143501.1	chr17	71526728	71526928	-	1	NA	NA	NA	29	NM_023294	67052	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	0.150000	0.636816	
mm_95828.1	chr11	55469554	55469754	+	1	NA	NA	NA	-98	NM_013716	27041	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0.120000	0.671642	
mm_9984.1	chr1	191253645	191253845	-	1	NA	NA	NA	64373	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.000000	0.472637	67(TGCTCTATATGG,-,0.00)
mm_65525.1	chr7	25786956	25787156	-	1	NA	NA	NA	1677	NM_001190974	26362	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.005000	0.497512	
mm_171477.1	chr4	145863932	145864132	+	1	NA	NA	NA	26813	NR_033612	236069	Mm.276881	NR_033612	ENSMUSG00000096233	Gm13238	OTTMUSG00000011065	carnitine deficiency-associated gene expressed in ventricle 3 pseudogene	pseudo	0.020000	0.398010	
mm_45821.1	chr5	87692694	87692894	-	1	NA	NA	NA	6631	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.258706	-6(GACTCTATATGC,-,0.00)
mm_172860.1	chr9	40803113	40803313	+	1	NA	NA	NA	1940	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.055000	0.527363	53(CTCTCTATGAGG,-,0.00)
mm_70757.1	chr8	21134519	21134719	+	1	NA	NA	NA	-31	NM_001177485	100038927	Mm.426552	NM_001177485	ENSMUSG00000074444	Defa30	Gm15284|OTTMUSG00000019742	defensin, alpha, 30	protein-coding	0.010000	0.532338	-33(TCCTATAAAGGC,+,0.00),-33(TCCTATAAAGGC,-,0.00)
mm_7500.1	chr1	121430901	121431101	-	1	NA	NA	NA	-66	NM_029955	70829	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	0.055000	0.532338	
mm_107741.1	chr12	58212200	58212400	+	1	NA	NA	NA	496	NM_009216	20605	Mm.278336	NM_009216	ENSMUSG00000035431	Sstr1	SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1	somatostatin receptor 1	protein-coding	0.045000	0.582090	
mm_27798.1	chr3	75655688	75655888	-	1	NA	NA	NA	-57	NR_040539	69193	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	0.005000	0.547264	
mm_60092.1	chr7	34969254	34969454	+	1	NA	NA	NA	56947	NM_008820	18624	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0.005000	0.557214	
mm_56074.1	chr6	87136410	87136610	-	1	NA	NA	NA	31764	NM_001167937	52372	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0.015000	0.487562	-100(CCTTATAAAGAG,+,0.00)
mm_13724.1	chr2	117417697	117417897	+	1	NA	NA	NA	-74920	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.020000	0.527363	
mm_34457.1	chr4	148130657	148130857	+	1	NA	NA	NA	-59	NM_027426	70433	Mm.275288	NM_027426	ENSMUSG00000029005	Draxin	2610109H07Rik|neucrin	dorsal inhibitory axon guidance protein	protein-coding	0.130000	0.791045	
mm_26558.1	chr3	146499736	146499936	+	1	NA	NA	NA	0	NM_010318	14707	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	0.175000	0.800995	
mm_66501.1	chr7	45083070	45083270	-	1	NA	NA	NA	9043	NM_026555	52377	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0.020000	0.621891	
mm_57432.1	chr6	124914347	124914547	-	1	NA	NA	NA	-2742	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.035000	0.592040	
mm_77841.1	chr9	5299175	5299375	+	1	NA	NA	NA	758	NM_009807	12362	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.005000	0.373134	
mm_39637.1	chr5	24482672	24482872	+	1	NA	NA	NA	30595	NM_139153	213990	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.035000	0.646766	
mm_149923.1	chr19	26623310	26623510	+	1	NA	NA	NA	18250	NM_011416	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.015000	0.477612	
mm_38026.1	chr4	133815711	133815911	-	1	NA	NA	NA	58920	NM_001285506	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.025000	0.487562	
mm_152250.1	chr19	8715913	8716113	-	1	NA	NA	NA	-2116	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.010000	0.467662	
mm_62272.1	chr7	99570466	99570666	+	1	NA	NA	NA	18297	NR_029760	723840		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	0.025000	0.577114	
mm_134685.1	chr16	22436458	22436658	-	1	NA	NA	NA	3012	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.010000	0.477612	
mm_113399.1	chr13	33484686	33484886	+	1	NA	NA	NA	-4	NM_011455	93806	Mm.202781	NM_011455	ENSMUSG00000057726	Serpinb9g	1600002F03Rik|AW545779|NK21B	serine (or cysteine) peptidase inhibitor, clade B, member 9g	protein-coding	0.020000	0.532338	
mm_3020.1	chr1	133365052	133365252	+	1	NA	NA	NA	1580	NM_175443	214253	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	0.000000	0.537313	
mm_114389.1	chr13	63271354	63271554	+	1	NA	NA	NA	25693	NR_045794	100504114	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	0.010000	0.288557	
mm_45433.1	chr5	67099078	67099278	-	1	NA	NA	NA	-52	NM_008888	18935	Mm.62505	NM_008888	ENSMUSG00000012520	Phox2b	Dilp1|NBPhox|Pmx2b|Px2b	paired-like homeobox 2b	protein-coding	0.015000	0.442786	
mm_145110.1	chr18	44200708	44200908	+	1	NA	NA	NA	-4631	NM_001048217	433181	Mm.117440	NM_001048217	ENSMUSG00000073573	Spink11	9230112K01Rik	serine peptidase inhibitor, Kazal type 11	protein-coding	0.010000	0.407960	
mm_38423.1	chr4	139192591	139192791	-	1	NA	NA	NA	-208	NM_009798	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.105000	0.721393	
mm_136378.1	chr16	92825741	92825941	-	1	NA	NA	NA	233	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.020000	0.472637	
mm_92975.1	chr10	86498791	86498991	-	1	NA	NA	NA	5	NM_001164495	27204	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	0.070000	0.676617	
mm_157614.1	chrX	53776305	53776505	-	1	NA	NA	NA	-11	NM_001009549	333473	Mm.327378	NM_001009549	ENSMUSG00000059334	Zfp36l3	AY661338	zinc finger protein 36, C3H type-like 3	protein-coding	0.035000	0.582090	
mm_101241.1	chr11	20712129	20712329	-	1	NA	NA	NA	29327	NM_001290545	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.025000	0.487562	
mm_115012.1	chr13	98354346	98354546	+	1	NA	NA	NA	201	NM_008242	15229	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	0.115000	0.706468	
mm_59059.1	chr7	19414896	19415096	+	1	NA	NA	NA	3902	NM_007710	12715	Mm.2375	NM_007710	ENSMUSG00000030399	Ckm	Ckmm|M-CK|MCK	creatine kinase, muscle	protein-coding	0.050000	0.592040	
mm_59176.1	chr7	24457903	24458103	+	1	NA	NA	NA	-4480	NM_011113	18793	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.000000	0.507463	
mm_116731.1	chr13	51734521	51734721	-	1	NA	NA	NA	59126	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.015000	0.527363	
mm_12731.1	chr2	78869058	78869258	+	1	NA	NA	NA	111	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.170000	0.791045	
mm_48970.1	chr6	4747512	4747712	+	1	NA	NA	NA	306	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.070000	0.507463	
mm_147767.1	chr18	61375331	61375531	-	1	NA	NA	NA	25000	NM_133249	170826	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0.000000	0.442786	
mm_110989.1	chr12	77166811	77167011	-	1	NA	NA	NA	-71193	NM_001252614	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.000000	0.427861	5(CCTTATAGAGCT,+,0.00)
mm_130744.1	chr15	101256135	101256335	-	1	NA	NA	NA	-10611	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.015000	0.557214	
mm_19250.1	chr2	84773255	84773455	-	1	NA	NA	NA	2074	NM_009776	12258	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.015000	0.587065	
mm_5570.1	chr1	39438975	39439175	-	1	NA	NA	NA	39672	NM_018775	54610	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.015000	0.477612	
mm_135925.1	chr16	69863700	69863900	-	1	NA	NA	NA	-56	NM_173069	224318	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0.015000	0.532338	
mm_19805.1	chr2	110305643	110305843	-	1	NA	NA	NA	-18	NM_130452	170442	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	0.010000	0.457711	
mm_72601.1	chr8	84415317	84415517	+	1	NA	NA	NA	53	NM_001252061	12286	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.155000	0.830846	
mm_96866.1	chr11	70166602	70166802	+	1	NA	NA	NA	79	NM_010796	17312	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	0.010000	0.492537	
mm_45793.1	chr5	87538080	87538280	-	1	NA	NA	NA	15	NM_019878	56362	Mm.23502	NM_019878	ENSMUSG00000029269	Sult1b1	ST1B1|St2b2	sulfotransferase family 1B, member 1	protein-coding	0.005000	0.417910	
mm_10541.1	chr2	16512058	16512258	+	1	NA	NA	NA	155854	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.005000	0.482587	-40(ACCCTTTTAAGG,-,0.00),-39(CCCTTTTAAGGC,-,0.00),-38(CCTTTTAAGGCA,+,0.00)
mm_74429.1	chr8	3717453	3717653	-	1	NA	NA	NA	3098	NM_029465	75863	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	0.010000	0.532338	
mm_59945.1	chr7	30425436	30425636	+	1	NA	NA	NA	2232	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.045000	0.626866	
mm_42144.1	chr5	111418127	111418327	+	1	NA	NA	NA	61	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.075000	0.666667	
mm_171651.1	chr4	40722501	40722701	+	1	NA	NA	NA	133	NM_008298	15502	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0.120000	0.716418	
mm_121517.1	chr14	122034569	122034769	+	1	NA	NA	NA	-5	NM_001037744	223262	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.045000	0.631841	
mm_158811.1	chrX	167307728	167307928	-	1	NA	NA	NA	22743	NM_001290757	170743	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	0.000000	0.328358	
mm_70919.1	chr8	25785204	25785404	+	1	NA	NA	NA	-95	NM_026121	67384	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	0.145000	0.706468	
mm_19591.1	chr2	102057397	102057597	-	1	NA	NA	NA	128963	NM_178886	241576	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.025000	0.497512	
mm_75289.1	chr8	41041759	41041959	-	1	NA	NA	NA	72	NM_001005865	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.025000	0.542289	
mm_64685.1	chr7	4514444	4514644	-	1	NA	NA	NA	1431	NM_001277903	21955	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0.010000	0.572139	
mm_132155.1	chr16	32177484	32177684	+	1	NA	NA	NA	-2216	NM_001033539	328660	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.020000	0.502488	
mm_132028.1	chr16	27388858	27389058	+	1	NA	NA	NA	2	NM_001289436	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.130000	0.761194	
mm_39121.1	chr4	155010916	155011116	-	1	NA	NA	NA	-32	NM_001113360	269615	Mm.379458	NM_175556	ENSMUSG00000029055	Plch2	A930027K05Rik|PLCeta2|Plc-eta2|Plcl4	phospholipase C, eta 2	protein-coding	0.015000	0.601990	
mm_106517.1	chr11	120550850	120551050	-	1	NA	NA	NA	182	NM_026814	68701	Mm.46477	NM_026814	ENSMUSG00000025129	Ppp1r27	1110033I14Rik|Dysfip1|toonin	protein phosphatase 1, regulatory subunit 27	protein-coding	0.090000	0.597015	
mm_82650.1	chr9	22022207	22022407	-	1	NA	NA	NA	19319	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.005000	0.542289	
mm_32966.1	chr4	119911763	119911963	+	1	NA	NA	NA	97185	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.035000	0.601990	
mm_108566.1	chr12	84773191	84773391	+	1	NA	NA	NA	21	NM_028863	74316	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0.075000	0.666667	
mm_90761.1	chr10	5550622	5550822	-	1	NA	NA	NA	-30	NM_001347732	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.050000	0.696517	
mm_79191.1	chr9	48450210	48450410	+	1	NA	NA	NA	-4034	NR_026561	667933	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.075000	0.562189	
mm_134200.1	chr16	11066053	11066253	-	1	NA	NA	NA	-145	NM_009223	20621	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0.080000	0.696517	
mm_129806.1	chr15	82987599	82987799	-	1	NA	NA	NA	-28403	NR_037241	100526477		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	0.020000	0.452736	
mm_158995.1	chr1	138116536	138116736	-	1	NA	NA	NA	58490	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.005000	0.407960	
mm_142263.1	chr17	39845036	39845236	-	1	NA	NA	NA	2139	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.095000	0.681592	
mm_8842.1	chr1	162692732	162692932	-	1	NA	NA	NA	-34613	NM_001177581	100038657	Mm.416999	NM_001177581	ENSMUSG00000091060	7420461P10Rik	ENSMUSG00000073516	RIKEN cDNA 7420461P10 gene	protein-coding	0.020000	0.462687	78(GCCCATTAAAGC,-,0.00)
mm_95149.1	chr11	35768696	35768896	+	1	NA	NA	NA	-699	NM_145962	211347	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0.010000	0.437811	
mm_89142.1	chr10	85871757	85871957	+	1	NA	NA	NA	26	NM_133993	103136	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	0.095000	0.641791	
mm_151944.1	chr19	5800905	5801105	-	1	NA	NA	NA	1667	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.035000	0.517413	
mm_105415.1	chr11	103638803	103639003	-	1	NA	NA	NA	-29	NM_027083	69444	Mm.275677	NM_027083	ENSMUSG00000020945	Lyzl6	1700023H08Rik|Lyc1|Lyzb	lysozyme-like 6	protein-coding	0.010000	0.502488	
mm_74552.1	chr8	10865833	10866033	-	1	NA	NA	NA	16521	NR_040705	320014	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.005000	0.457711	
mm_41473.1	chr5	91517641	91517841	+	1	NA	NA	NA	41	NM_145562	231440	Mm.5002	NM_145562	ENSMUSG00000034981	Parm1	2210012L08Rik|9130213B05Rik|W91666	prostate androgen-regulated mucin-like protein 1	protein-coding	0.110000	0.731343	
mm_34862.1	chr4	155554973	155555173	+	1	NA	NA	NA	-7319	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.015000	0.477612	
mm_112639.1	chr13	16014347	16014547	+	1	NA	NA	NA	2596	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.437811	
mm_89125.1	chr10	84917475	84917675	+	1	NA	NA	NA	-38	NM_001013441	237422	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0.085000	0.721393	
mm_72055.1	chr8	71371221	71371421	+	1	NA	NA	NA	23	NM_001293800	77090	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	0.085000	0.676617	
mm_22328.1	chr2	180682534	180682734	-	1	NA	NA	NA	9414	NR_111965	23856	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.020000	0.388060	
mm_130471.1	chr15	98727341	98727541	-	1	NA	NA	NA	757	NM_024169	66120	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.025000	0.547264	
mm_17233.1	chr2	25580123	25580323	-	1	NA	NA	NA	-124	NM_001005424	381353	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	-	predicted gene 996	protein-coding	0.020000	0.552239	
mm_78416.1	chr9	31030317	31030517	+	1	NA	NA	NA	-227	NM_001115130	235132	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.140000	0.756219	
mm_53876.1	chr6	149565992	149566192	+	1	NA	NA	NA	157108	NM_009753	12121	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	bicaudal D homolog 1 (Drosophila)	protein-coding	0.035000	0.532338	
mm_49490.1	chr6	29694127	29694327	+	1	NA	NA	NA	13	NM_146173	232670	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	0.155000	0.771144	
mm_60200.1	chr7	43409315	43409515	+	1	NA	NA	NA	1135	NM_172900	243958	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0.010000	0.487562	
mm_170772.1	chr2	163419385	163419585	-	1	NA	NA	NA	-15	NM_025699	66680	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	0.135000	0.716418	
mm_153419.1	chr19	40638671	40638871	-	1	NA	NA	NA	-20999	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.015000	0.492537	
mm_154536.1	chrM	13849	14049	-	1	NA	NA	NA	NA	NA									0.010000	0.338308	-48(CTATTTATGGAG,+,0.00)
mm_1835.1	chr1	82820023	82820223	+	1	NA	NA	NA	-19337	NM_001310713	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.010000	0.368159	-55(TCCTTTAAAGAC,+,0.00)
mm_105264.1	chr11	102358389	102358589	-	1	NA	NA	NA	6792	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.040000	0.606965	
mm_33362.1	chr4	129491139	129491339	+	1	NA	NA	NA	49	NM_001085491	68233	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0.075000	0.676617	
mm_146383.1	chr18	82585479	82585679	+	1	NA	NA	NA	31071	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.030000	0.492537	
mm_94943.1	chr11	29718625	29718825	+	1	NA	NA	NA	162	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.015000	0.447761	
mm_57780.1	chr6	129239701	129239901	-	1	NA	NA	NA	-1319	NR_040266	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.015000	0.432836	
mm_117534.1	chr13	83572006	83572206	-	1	NA	NA	NA	-1501	NM_001347577	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.020000	0.507463	
mm_84326.1	chr9	64021613	64021813	-	1	NA	NA	NA	346	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.070000	0.547264	
mm_51947.1	chr6	91726095	91726295	+	1	NA	NA	NA	42128	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.020000	0.567164	
mm_45726.1	chr5	86159210	86159410	-	1	NA	NA	NA	13433	NM_172712	231380	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	0.010000	0.343284	
mm_161397.1	chr14	105896954	105897154	-	1	NA	NA	NA	-235	NM_011897	24064	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty homolog 2 (Drosophila)	protein-coding	0.150000	0.796020	
mm_29398.1	chr3	108904474	108904674	-	1	NA	NA	NA	7130	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.070000	0.527363	
mm_27747.1	chr3	69156057	69156257	-	1	NA	NA	NA	24924	NR_126533	381452	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	0.020000	0.393035	
mm_127858.1	chr15	8350381	8350581	-	1	NA	NA	NA	93982	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.015000	0.398010	
mm_132522.1	chr16	37776955	37777155	+	1	NA	NA	NA	0	NM_008047	14314	Mm.182434	NM_008047	ENSMUSG00000022816	Fstl1	AI316791|AW107808|Fstl|TSC-36	follistatin-like 1	protein-coding	0.085000	0.701493	-32(GGGTCTTAAGGG,-,0.00)
mm_125872.1	chr15	75615024	75615224	+	1	NA	NA	NA	-1560	NM_001044718	22701	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0.010000	0.492537	
mm_134809.1	chr16	24895105	24895305	-	1	NA	NA	NA	-164434	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.010000	0.398010	-67(TGCTTTTAAAAC,-,0.00),-66(GCTTTTAAAACA,+,0.00),-34(GTACATAAAAGG,-,0.00)
mm_3365.1	chr1	138303459	138303659	+	1	NA	NA	NA	29821	NM_177397	338375	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.005000	0.398010	
mm_5639.1	chr1	40441581	40441781	-	1	NA	NA	NA	2052	NM_010743	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.010000	0.398010	
mm_148998.1	chr19	8664247	8664447	+	1	NA	NA	NA	342	NM_001112697	12669	Mm.240607	NM_007698	ENSMUSG00000032773	Chrm1	Chrm-1|M1|M1R	cholinergic receptor, muscarinic 1, CNS	protein-coding	0.025000	0.666667	
mm_64408.1	chr7	142511939	142512139	+	1	NA	NA	NA	-5268	NR_033261	677289	Mm.350054	NR_033261	ENSMUSG00000043795	Prr33	ENSMUSG00000043795|Gm14492|OTTMUSG00000016823	proline rich 33	ncRNA	0.005000	0.547264	
mm_101392.1	chr11	26103728	26103928	-	1	NA	NA	NA	-98412	NR_105791	102466154		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0.015000	0.437811	
mm_24387.1	chr3	90254254	90254454	+	1	NA	NA	NA	73	NM_028881	74343	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2|mTORC2	CREB regulated transcription coactivator 2	protein-coding	0.130000	0.751244	
mm_101433.1	chr11	30100220	30100420	-	1	NA	NA	NA	-74287	NM_146016	237711	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0.000000	0.288557	
mm_52313.1	chr6	108829035	108829235	+	1	NA	NA	NA	494	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.145000	0.711443	
mm_37899.1	chr4	132638795	132638995	-	1	NA	NA	NA	-151	NM_210071	14050	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0.065000	0.577114	
mm_144483.1	chr18	23989573	23989773	+	1	NA	NA	NA	39	NM_011755	22694	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	0.050000	0.552239	
mm_129661.1	chr15	81104934	81105134	-	1	NA	NA	NA	13	NM_153049	223701	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.020000	0.567164	
mm_9811.1	chr1	182014368	182014568	-	1	NA	NA	NA	5512	NM_008680	13800	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	enabled homolog (Drosophila)	protein-coding	0.010000	0.427861	
mm_98900.1	chr11	98000581	98000781	+	1	NA	NA	NA	-4508	NM_207231	217151	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.020000	0.547264	
mm_162710.1	chr10	26374874	26375074	+	1	NA	NA	NA	245	NM_172787	237339	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	l(3)mbt-like 3 (Drosophila)	protein-coding	0.085000	0.616915	
mm_62452.1	chr7	101394299	101394499	+	1	NA	NA	NA	11	NM_198096	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.010000	0.631841	
mm_65114.1	chr7	19319946	19320146	-	1	NA	NA	NA	-10001	NM_001347586	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.110000	0.671642	
mm_111961.1	chr12	109598439	109598639	-	1	NA	NA	NA	-3136	NM_184109	353326	Mm.23062	NM_184109	ENSMUSG00000085925	Rtl1	6430411K18Rik|Mar|Mart1|Mor1|Peg11	retrotransposon-like 1	protein-coding	0.010000	0.308458	
mm_59350.1	chr7	25659100	25659300	+	1	NA	NA	NA	47	NR_104358	27998	Mm.27853	NM_138586	ENSMUSG00000061286	Exosc5	D7Wsu180e	exosome component 5	protein-coding	0.130000	0.666667	
mm_841.1	chr1	51594077	51594277	+	1	NA	NA	NA	-115778	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.010000	0.517413	39(AGCTATAAAAGC,-,0.00)
mm_66143.1	chr7	31126828	31127028	-	1	NA	NA	NA	95	NM_011322	20266	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	0.155000	0.810945	
mm_22514.1	chr3	7618675	7618875	+	1	NA	NA	NA	-5015	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.000000	0.263682	
mm_17015.1	chr2	18952077	18952277	-	1	NA	NA	NA	45944	NM_008845	18718	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.010000	0.398010	
mm_128621.1	chr15	58956410	58956610	-	1	NA	NA	NA	22700	NM_023172	66218	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.060000	0.557214	
mm_41363.1	chr5	90507784	90507984	+	1	NA	NA	NA	-11065	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.015000	0.507463	
mm_95538.1	chr11	52265649	52265849	+	1	NA	NA	NA	16846	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.020000	0.552239	
mm_154746.1	chrX	10487727	10487927	+	1	NA	NA	NA	2711	NM_019634	21912	Mm.18590	NM_019634	ENSMUSG00000058254	Tspan7	1200014P11Rik|A15|AI323365|Cd231|Mxs1|PE31|R74651|TALLA|Tm4sf2	tetraspanin 7	protein-coding	0.005000	0.427861	
mm_85496.1	chr9	106136282	106136482	-	1	NA	NA	NA	-17742	NR_029549	387153		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	0.000000	0.432836	-89(ACTTTTATGGCA,+,0.00)
mm_28994.1	chr3	101300137	101300337	-	1	NA	NA	NA	-12298	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.020000	0.482587	
mm_94584.1	chr11	11691906	11692106	+	1	NA	NA	NA	1829	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.005000	0.517413	
mm_105271.1	chr11	102406647	102406847	-	1	NA	NA	NA	770	NM_026542	68066	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.015000	0.492537	
mm_60679.1	chr7	45124510	45124710	+	1	NA	NA	NA	-221	NM_013725	27207	Mm.196538	NM_013725	ENSMUSG00000003429	Rps11	-	ribosomal protein S11	protein-coding	0.075000	0.572139	
mm_12954.1	chr2	90188808	90189008	+	1	NA	NA	NA	35563	NM_001270423	100042690	Mm.271314	NM_001270423	ENSMUSG00000089859	Gm13769	Gm13766|OTTMUSG00000014164|OTTMUSG00000014278	predicted gene 13769	protein-coding	0.000000	0.368159	
mm_120218.1	chr14	62760409	62760609	+	1	NA	NA	NA	8	NR_045503	71000	Mm.399410	NR_045503	ENSMUSG00000097775	4931440J10Rik	-	RIKEN cDNA 4931440J10 gene	ncRNA	0.115000	0.756219	
mm_123029.1	chr14	55524116	55524316	-	1	NA	NA	NA	36	NM_008736	18185	Mm.20422	NM_008736	ENSMUSG00000040632	Nrl	D14H14S46E	neural retina leucine zipper gene	protein-coding	0.015000	0.512438	-33(CCTTTAAGAGTG,+,0.00)
mm_49946.1	chr6	39879520	39879720	+	1	NA	NA	NA	-68684	NM_001010930	14548	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.000000	0.432836	
mm_64207.1	chr7	141475210	141475410	+	1	NA	NA	NA	74	NM_053082	64540	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.110000	0.721393	
mm_65759.1	chr7	28630407	28630607	-	1	NA	NA	NA	508	NM_175319	101744	Mm.26022	NM_175319	ENSMUSG00000037469	Acp7	AU017076|C330005M16Rik|Papl	acid phosphatase 7, tartrate resistant	protein-coding	0.090000	0.696517	
mm_87200.1	chr10	39551371	39551571	+	1	NA	NA	NA	-61463	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.035000	0.492537	
mm_2300.1	chr1	91527934	91528134	+	1	NA	NA	NA	-12531	NM_001039126	65247	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	0.005000	0.462687	
mm_116804.1	chr13	54106656	54106856	-	1	NA	NA	NA	34911	NM_027324	14057	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	0.015000	0.417910	
mm_109317.1	chr12	109561166	109561366	+	1	NA	NA	NA	-2426	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.005000	0.427861	
mm_7960.1	chr1	133929946	133930146	-	1	NA	NA	NA	-8645	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.005000	0.462687	
mm_20340.1	chr2	127656089	127656289	-	1	NA	NA	NA	506	NM_010762	17153	Mm.39040	NM_010762	ENSMUSG00000027375	Mal	Mpv17|Vip17	myelin and lymphocyte protein, T cell differentiation protein	protein-coding	0.100000	0.721393	
mm_147761.1	chr18	61353300	61353500	-	1	NA	NA	NA	47031	NM_133249	170826	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0.005000	0.457711	
mm_78122.1	chr9	20644716	20644916	+	1	NA	NA	NA	-8	NM_001310746	66177	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.075000	0.557214	
mm_159734.1	chr5	62813642	62813842	+	1	NA	NA	NA	-81	NM_001170705	100322896	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0.005000	0.338308	
mm_166488.1	chr5	148741770	148741970	+	1	NA	NA	NA	30	NR_028285	70138	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.045000	0.512438	
mm_92418.1	chr10	76949214	76949414	-	1	NA	NA	NA	12633	NM_001347216	59093	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding	0.010000	0.383085	
mm_89651.1	chr10	97479510	97479710	+	1	NA	NA	NA	110	NM_001190451	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.020000	0.492537	
mm_99636.1	chr11	105181775	105181975	+	1	NA	NA	NA	348	NM_001294329	24086	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	0.160000	0.860697	
mm_85896.1	chr9	111055580	111055780	-	1	NA	NA	NA	1564	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.025000	0.527363	
mm_46635.1	chr5	108519767	108519967	-	1	NA	NA	NA	30160	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.010000	0.631841	
mm_68575.1	chr7	115845996	115846196	-	1	NA	NA	NA	44	NM_001277326	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.005000	0.412935	
mm_47228.1	chr5	121383993	121384193	-	1	NA	NA	NA	1522	NM_001163470	231712	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.015000	0.442786	
mm_37625.1	chr4	127330487	127330687	-	1	NA	NA	NA	249	NM_001160012	14620	Mm.90003	NM_008126	ENSMUSG00000042367	Gjb3	Cnx31|Cx31|D4Wsu144e|Gjb-3	gap junction protein, beta 3	protein-coding	0.075000	0.696517	
mm_132064.1	chr16	30009919	30010119	+	1	NA	NA	NA	1352	NR_033631	100043102	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	0.020000	0.442786	
mm_15389.1	chr2	156720946	156721146	+	1	NA	NA	NA	81	NM_001042488	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.155000	0.776119	
mm_134949.1	chr16	31300350	31300550	-	1	NA	NA	NA	14358	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.015000	0.507463	
mm_78306.1	chr9	22655016	22655216	+	1	NA	NA	NA	179401	NM_178415	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.020000	0.462687	
mm_172827.1	chr9	17785725	17785925	-	1	NA	NA	NA	-506442	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.030000	0.393035	
mm_156997.1	chrX	7564186	7564386	-	1	NA	NA	NA	-9314	NR_029473	78185	Mm.160055	NR_029473	ENSMUSG00000039545	Ppp1r3fos	4930524L23Rik	protein phosphatase 1, regulatory subunit 3F, opposite strand	ncRNA	0.025000	0.522388	
mm_30873.1	chr4	32238382	32238582	+	1	NA	NA	NA	-178953	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.140000	0.756219	
mm_124317.1	chr14	103346257	103346457	-	1	NA	NA	NA	443	NM_207215	105689	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.080000	0.681592	
mm_158757.1	chrX	166478541	166478741	-	1	NA	NA	NA	1226	NM_019773	56382	Mm.25306	NM_019773	ENSMUSG00000079316	Rab9	2410064E05Rik|AI195561|Rab9a|Sid6061p	RAB9, member RAS oncogene family	protein-coding	0.010000	0.383085	
mm_160465.1	chr8	110846378	110846578	+	1	NA	NA	NA	-122	NM_001310607	102339	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	0.065000	0.572139	-17(GCCTTAAAGGAC,+,0.00)
mm_37114.1	chr4	116650377	116650577	-	1	NA	NA	NA	1197	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.015000	0.452736	
mm_90882.1	chr10	9811913	9812113	-	1	NA	NA	NA	89027	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0.000000	0.283582	
mm_129178.1	chr15	76280852	76281052	-	1	NA	NA	NA	-11113	NR_045747	100038659	Mm.448549	NR_045747		Mirt2	ENSMUSG00000075583|Gm10872|Gm24562	myocardial infraction associated transcript 2	ncRNA	0.015000	0.437811	
mm_26984.1	chr3	25685245	25685445	-	1	NA	NA	NA	467962	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.015000	0.467662	
mm_46066.1	chr5	92278096	92278296	-	1	NA	NA	NA	-15	NM_025972	67111	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	0.055000	0.681592	
mm_38300.1	chr4	136896181	136896381	-	1	NA	NA	NA	2563	NM_007572	12259	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	0.045000	0.567164	
mm_67012.1	chr7	65370828	65371028	-	1	NA	NA	NA	316	NM_001163574	21872	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.140000	0.726368	
mm_78474.1	chr9	32679674	32679874	+	1	NA	NA	NA	-16268	NM_011808	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.015000	0.417910	
mm_93469.1	chr10	111134546	111134746	-	1	NA	NA	NA	-30156	NM_001003717	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.025000	0.467662	-32(CTGTATATAAAC,-,0.00)
mm_66664.1	chr7	45717548	45717748	-	1	NA	NA	NA	354	NM_203280	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.045000	0.507463	
mm_1445.1	chr1	67229319	67229519	+	1	NA	NA	NA	106392	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.010000	0.373134	
mm_72887.1	chr8	89776331	89776531	+	1	NA	NA	NA	571821	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding	0.015000	0.467662	
mm_94020.1	chr10	127666610	127666810	-	1	NA	NA	NA	-7	NM_008668	17937	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0.085000	0.761194	
mm_34665.1	chr4	150868191	150868391	+	1	NA	NA	NA	13200	NM_133753	74155	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.015000	0.432836	
mm_136723.1	chr17	8235939	8236139	+	1	NA	NA	NA	-4	NM_001190333	12458	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	0.005000	0.457711	
mm_88540.1	chr10	78465356	78465556	+	1	NA	NA	NA	-508	NM_172134	216134	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.005000	0.527363	
mm_16528.1	chr2	181543329	181543529	+	1	NA	NA	NA	22944	NM_001271584	13002	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0.010000	0.358209	12(CTCTTTATAGAC,+,0.00)
mm_82668.1	chr9	22130044	22130244	-	1	NA	NA	NA	454	NM_007388	11433	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.020000	0.567164	
mm_72517.1	chr8	83955572	83955772	+	1	NA	NA	NA	-22	NM_024184	66929	Mm.29680	NM_024184	ENSMUSG00000005470	Asf1b	1700003K02Rik|AA409591	anti-silencing function 1B histone chaperone	protein-coding	0.100000	0.641791	
mm_114016.1	chr13	52617280	52617480	+	1	NA	NA	NA	20498	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.015000	0.487562	
mm_32951.1	chr4	119619186	119619386	+	1	NA	NA	NA	-18446	NM_008190	14915	Mm.2614	NM_008190	ENSMUSG00000023247	Guca2a	Guca2	guanylate cyclase activator 2a (guanylin)	protein-coding	0.010000	0.452736	
mm_92431.1	chr10	77113861	77114061	-	1	NA	NA	NA	-256	NM_001109991	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.025000	0.601990	
mm_146127.1	chr18	74517097	74517297	+	1	NA	NA	NA	13927	NR_045368	73606	Mm.444734	NR_045368		1700120E14Rik	-	RIKEN cDNA 1700120E14 gene	ncRNA	0.015000	0.253731	
mm_3522.1	chr1	150107704	150107904	+	1	NA	NA	NA	7773	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.243781	
mm_4463.1	chr1	172990226	172990426	+	1	NA	NA	NA	33558	NM_008763	18313	Mm.377103	NM_008763	ENSMUSG00000037924	Olfr16	MOR23|MOR26713	olfactory receptor 16	protein-coding	0.015000	0.412935	
mm_113873.1	chr13	48662918	48663118	+	1	NA	NA	NA	-18	NM_007526	12022	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	0.195000	0.845771	
mm_51020.1	chr6	65042614	65042814	+	1	NA	NA	NA	47	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.105000	0.671642	
mm_80039.1	chr9	68969052	68969252	+	1	NA	NA	NA	203806	NR_033299	320440	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.015000	0.517413	
mm_135084.1	chr16	34514006	34514206	-	1	NA	NA	NA	-79	NM_177357	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.040000	0.592040	
mm_81683.1	chr9	111118027	111118227	+	1	NA	NA	NA	16	NM_001164838	71268	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.160000	0.766169	
mm_17525.1	chr2	29252880	29253080	-	1	NA	NA	NA	13	NR_029460	76220	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0.060000	0.572139	
mm_36627.1	chr4	91376270	91376470	-	1	NA	NA	NA	121	NM_001347149	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding	0.035000	0.507463	-7(CCTTTTAAGACG,+,0.00)
mm_136227.1	chr16	90264903	90265103	-	1	NA	NA	NA	19500	NM_178923	224432	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.005000	0.313433	
mm_117966.1	chr13	99585566	99585766	-	1	NA	NA	NA	-69064	NM_008634	17755	Mm.4173	NM_008634	ENSMUSG00000052727	Map1b	A230055D22|AI843217|LC1|MAP5|Mtap-5|Mtap1b|Mtap5	microtubule-associated protein 1B	protein-coding	0.015000	0.477612	22(GGTTTTATAAAG,-,0.00),24(TTTTATAAAGGG,+,0.00)
mm_110556.1	chr12	55491393	55491593	-	1	NA	NA	NA	1154	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.015000	0.457711	
mm_141282.1	chr17	27909028	27909228	-	1	NA	NA	NA	-178	NM_001286040	224650	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.115000	0.701493	
mm_172034.1	chr6	125113876	125114076	+	1	NA	NA	NA	16952	NR_106012	102466272		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	0.030000	0.522388	
mm_34107.1	chr4	139192851	139193051	+	1	NA	NA	NA	52	NM_001037761	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.090000	0.751244	
mm_104001.1	chr11	84871636	84871836	-	1	NA	NA	NA	813	NR_131197	102635561	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	0.005000	0.328358	32(TACTTTTAAAGG,-,0.00),33(ACTTTTAAAGGT,+,0.00),34(CTTTTAAAGGTC,+,0.00)
mm_153854.1	chr19	46379375	46379575	-	1	NA	NA	NA	16260	NM_016860	54130	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0.025000	0.442786	
mm_109081.1	chr12	104413510	104413710	+	1	NA	NA	NA	6902	NM_009252	20716	Mm.482074	NM_009252	ENSMUSG00000021091	Serpina3n	Spi2-2|Spi2.2|Spi2/eb.4	serine (or cysteine) peptidase inhibitor, clade A, member 3N	protein-coding	0.015000	0.482587	-36(CCCTTTATAGCC,+,0.00)
mm_72941.1	chr8	91619129	91619329	+	1	NA	NA	NA	182425	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.000000	0.398010	
mm_22049.1	chr2	168262749	168262949	-	1	NA	NA	NA	6482	NM_001081134	241794	Mm.425102	NM_001081134	ENSMUSG00000074575	Kcng1	AW536275|OTTMUSG00000016048	potassium voltage-gated channel, subfamily G, member 1	protein-coding	0.090000	0.651741	
mm_54580.1	chr6	38124388	38124588	-	1	NA	NA	NA	98	NM_080467	140494	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	0.010000	0.487562	
mm_74615.1	chr8	12672041	12672241	-	1	NA	NA	NA	-41	NM_198031	259279	Mm.142095	NM_198031	ENSMUSG00000000759	Tubgcp3	GCP3|Spc98p	tubulin, gamma complex associated protein 3	protein-coding	0.150000	0.686567	
mm_73722.1	chr8	112018755	112018955	+	1	NA	NA	NA	7496	NM_020584	57321	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	0.000000	0.378109	
mm_102456.1	chr11	59839149	59839349	-	1	NA	NA	NA	518	NM_011991	26572	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	0.065000	0.636816	-3(TCTTTTCTAGGC,+,0.00)
mm_55888.1	chr6	83535908	83536108	-	1	NA	NA	NA	243	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.010000	0.537313	
mm_138675.1	chr17	35915593	35915793	+	1	NA	NA	NA	676	NM_025878	66973	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik	mitochondrial ribosomal protein S18B	protein-coding	0.025000	0.512438	-94(GCTTTAAAGCCA,+,0.00)
mm_46119.1	chr5	92435022	92435222	-	1	NA	NA	NA	77	NM_183392	269113	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.095000	0.646766	
mm_105168.1	chr11	101784202	101784402	-	1	NA	NA	NA	1008	NM_008815	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.050000	0.616915	
mm_14998.1	chr2	152427525	152427725	+	1	NA	NA	NA	12038	NR_110368	228778	Mm.70959	NM_177656	ENSMUSG00000032680	6820408C15Rik	-	RIKEN cDNA 6820408C15 gene	protein-coding	0.045000	0.537313	
mm_161531.1	chr15	102204242	102204442	+	1	NA	NA	NA	-229	NM_001289690	68744	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0.030000	0.562189	
mm_90307.1	chr10	126979071	126979271	+	1	NA	NA	NA	454	NM_001113470	52468	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0.125000	0.756219	
mm_136448.1	chr16	94994960	94995160	-	1	NA	NA	NA	2636	NM_001025584	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.015000	0.532338	
mm_78328.1	chr9	25252117	25252317	+	1	NA	NA	NA	-222	NM_009859	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.085000	0.542289	
mm_134062.1	chr16	8425024	8425224	-	1	NA	NA	NA	12	NM_029070	74720	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding	0.065000	0.621891	
mm_76415.1	chr8	84965950	84966150	-	1	NA	NA	NA	-39	NM_027187	69724	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	0.100000	0.601990	
mm_130386.1	chr15	97858798	97858998	-	1	NA	NA	NA	-14396	NM_001204278	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.010000	0.562189	
mm_172344.1	chr7	11166078	11166278	-	1	NA	NA	NA	-30	NM_001100186	545913	Mm.380086	NM_001100186	ENSMUSG00000090714	Zscan4d	EG545913	zinc finger and SCAN domain containing 4D	protein-coding	0.015000	0.482587	-38(GGCTATAAAAGG,-,0.00)
mm_338.1	chr1	30284613	30284813	+	1	NA	NA	NA	578543	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding	0.020000	0.432836	
mm_18282.1	chr2	52470904	52471104	-	1	NA	NA	NA	-46130	NM_182994	75423	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.005000	0.402985	
mm_74253.1	chr8	124862552	124862752	+	1	NA	NA	NA	377	NM_025615	66523	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	0.030000	0.462687	
mm_109093.1	chr12	104820202	104820402	+	1	NA	NA	NA	44774	NR_104436	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.025000	0.507463	
mm_6744.1	chr1	83277135	83277335	-	1	NA	NA	NA	117473	NM_027725	71227	Mm.256482	NM_027725	ENSMUSG00000053161	Daw1	4930563E19Rik|4933429D11Rik|Wdr69|b2b1116Clo|b2b1584Clo	dynein assembly factor with WDR repeat domains 1	protein-coding	0.035000	0.492537	
mm_2080.1	chr1	87674108	87674308	+	1	NA	NA	NA	53896	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.020000	0.462687	-32(CCGTATAAAAAC,-,0.00)
mm_40707.1	chr5	65863181	65863381	+	1	NA	NA	NA	-288	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.025000	0.472637	
mm_45689.1	chr5	77381022	77381222	-	1	NA	NA	NA	26923	NM_001159518	29817	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	0.015000	0.363184	27(CTCTTTTTAAGG,-,0.00),29(CTTTTTAAGGTT,+,0.00)
mm_40031.1	chr5	33629857	33630057	+	1	NA	NA	NA	-322	NM_178390	74504	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	0.080000	0.572139	75(TCTTTTATAGCA,+,0.00)
mm_89454.1	chr10	93160759	93160959	+	1	NA	NA	NA	-17	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.130000	0.631841	
mm_84975.1	chr9	85327019	85327219	-	1	NA	NA	NA	5	NM_001160378	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.160000	0.766169	
mm_56456.1	chr6	97993081	97993281	-	1	NA	NA	NA	1398	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.015000	0.532338	
mm_59293.1	chr7	25077254	25077454	+	1	NA	NA	NA	108	NM_175477	232976	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	0.130000	0.746269	
mm_118522.1	chr14	14718682	14718882	+	1	NA	NA	NA	15757	NM_001033270	218756	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.015000	0.447761	-59(TGTCATAAAAGC,-,0.00)
mm_1199.1	chr1	62708943	62709143	+	1	NA	NA	NA	5726	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.010000	0.447761	
mm_68462.1	chr7	110293365	110293565	-	1	NA	NA	NA	71762	NM_009302	20947	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.000000	0.457711	-35(CCCCATAAAAGG,-,0.00)
mm_5520.1	chr1	37719741	37719941	-	1	NA	NA	NA	-30	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.200000	0.845771	
mm_46162.1	chr5	96162490	96162690	-	1	NA	NA	NA	-600	NM_144910	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.110000	0.681592	
mm_48871.1	chr5	150594380	150594580	-	1	NA	NA	NA	45	NM_133898	100637	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.070000	0.661692	
mm_139847.1	chr17	69383272	69383472	+	1	NA	NA	NA	-606	NM_009547	22666	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0.175000	0.830846	
mm_110926.1	chr12	76369453	76369653	-	1	NA	NA	NA	7	NM_028356	109929	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0.175000	0.796020	
mm_101403.1	chr11	26593855	26594055	-	1	NA	NA	NA	-35	NM_001252447	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.010000	0.532338	
mm_113530.1	chr13	37826827	37827027	+	1	NA	NA	NA	15	NR_033615	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.085000	0.671642	
mm_150388.1	chr19	36349480	36349680	+	1	NA	NA	NA	-29487	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.050000	0.507463	
mm_142640.1	chr17	47433166	47433366	-	1	NA	NA	NA	-3373	NM_145489	224833	Mm.218444	NM_145489	ENSMUSG00000034382	AI661453	-	expressed sequence AI661453	protein-coding	0.005000	0.447761	
mm_171280.1	chr3	88835149	88835349	+	1	NA	NA	NA	18	NM_001242372	76022	Mm.126870	NM_027389	ENSMUSG00000054199	Gon4l	1500041I23Rik|2610100B20Rik|3632445O20Rik|5430404N14Rik|AA387005	gon-4-like (C.elegans)	protein-coding	0.115000	0.666667	
mm_37063.1	chr4	116056243	116056443	-	1	NA	NA	NA	-2467	NM_028142	72181	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	0.005000	0.383085	
mm_165485.1	chr2	164333496	164333696	+	1	NA	NA	NA	831	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.025000	0.502488	-35(CCTTTAAAACCA,+,0.00)
mm_63081.1	chr7	122288611	122288811	+	1	NA	NA	NA	-414	NM_001316672	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.020000	0.557214	
mm_152880.1	chr19	24527350	24527550	-	1	NA	NA	NA	28377	NM_008846	18719	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	0.010000	0.462687	-34(GCTTATAAAAAG,+,0.00),-34(GCTTATAAAAAG,-,0.00)
mm_23021.1	chr3	34599713	34599913	+	1	NA	NA	NA	-38651	NR_035433	100316679		NR_035433	ENSMUSG00000104797	Mir1897	Mirn1897|mmu-mir-1897	microRNA 1897	ncRNA	0.020000	0.477612	-66(GGCTTTATAGAG,-,0.00),-64(CTTTATAGAGCA,+,0.00)
mm_89400.1	chr10	90576377	90576577	+	1	NA	NA	NA	-214	NM_001177396	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.030000	0.442786	
mm_7438.1	chr1	120067859	120068059	-	1	NA	NA	NA	5821	NM_019432	170706	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0.030000	0.582090	
mm_27077.1	chr3	28816170	28816370	-	1	NA	NA	NA	10759	NM_026517	68028	Mm.371630	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0.010000	0.572139	-34(GCCTTAAGACCC,+,0.00)
mm_157960.1	chrX	88115816	88116016	-	1	NA	NA	NA	-293	NM_001160403	331461	Mm.121680	NM_001160403	ENSMUSG00000052372	Il1rapl1	6330532G10Rik|C030039N24|IL1R8|IL1RAPL|MRX34|OPHN4|TIGIRR-2	interleukin 1 receptor accessory protein-like 1	protein-coding	0.015000	0.383085	
mm_132844.1	chr16	46006432	46006632	+	1	NA	NA	NA	3881	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.010000	0.507463	
mm_87298.1	chr10	42534719	42534919	+	1	NA	NA	NA	32765	NM_017472	54198	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.025000	0.452736	
mm_53163.1	chr6	125321315	125321515	+	1	NA	NA	NA	75	NM_011324	20276	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0.020000	0.616915	
mm_158809.1	chrX	167304716	167304916	-	1	NA	NA	NA	25755	NM_001290757	170743	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	0.000000	0.402985	
mm_84976.1	chr9	85327047	85327247	-	1	NA	NA	NA	3	NM_001160379	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.170000	0.781095	
mm_578.1	chr1	39272809	39273009	+	1	NA	NA	NA	78637	NM_008719	18143	Mm.2380	NM_008719	ENSMUSG00000026077	Npas2	MOP4|bHLHe9	neuronal PAS domain protein 2	protein-coding	0.015000	0.308458	
mm_29664.1	chr3	122612124	122612324	-	1	NA	NA	NA	7490	NM_001114665	214459	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	0.000000	0.283582	
mm_33025.1	chr4	121215197	121215397	+	1	NA	NA	NA	-213	NM_001346660	109263	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	0.060000	0.572139	
mm_51205.1	chr6	71325740	71325940	+	1	NA	NA	NA	3028	NM_009858	12526	Mm.333148	NM_009858	ENSMUSG00000053044	Cd8b1	Cd8b|Ly-3|Ly-C|Lyt-3	CD8 antigen, beta chain 1	protein-coding	0.000000	0.452736	
mm_166957.1	chr7	44477315	44477515	+	1	NA	NA	NA	7068	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.442786	
mm_138501.1	chr17	35210389	35210589	+	1	NA	NA	NA	-5138	NM_010735	16992	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0.015000	0.497512	
mm_68391.1	chr7	109518896	109519096	-	1	NA	NA	NA	-199	NM_011975	26451	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	0.105000	0.671642	
mm_24447.1	chr3	90609287	90609487	+	1	NA	NA	NA	865	NM_011312	20199	Mm.19946	NM_011312	ENSMUSG00000001023	S100a5	S100D9	S100 calcium binding protein A5	protein-coding	0.000000	0.522388	
mm_170415.1	chr18	68692080	68692280	+	1	NA	NA	NA	-47220	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0.080000	0.557214	28(AACTTTAAATGG,-,0.00)
mm_118894.1	chr14	26637918	26638118	+	1	NA	NA	NA	-179	NM_007479	11843	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.115000	0.681592	
mm_173189.1	chrX	61258819	61259019	-	1	NA	NA	NA	67626	NR_033502	320247	Mm.447372	NR_033502		C030023E24Rik	-	RIKEN cDNA C030023E24 gene	ncRNA	0.025000	0.442786	
mm_60051.1	chr7	31060019	31060219	+	1	NA	NA	NA	184	NM_144556	243914	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	0.020000	0.631841	
mm_49124.1	chr6	8524070	8524270	+	1	NA	NA	NA	4112	NM_001286729	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.000000	0.318408	
mm_23577.1	chr3	63361911	63362111	+	1	NA	NA	NA	65916	NM_001289463	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.010000	0.422886	
mm_27732.1	chr3	69044869	69045069	-	1	NA	NA	NA	-227	NM_025863	66949	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.110000	0.701493	
mm_60631.1	chr7	44813233	44813433	+	1	NA	NA	NA	2325	NM_030693	107503	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	0.010000	0.646766	
mm_5425.1	chr1	34472953	34473153	-	1	NA	NA	NA	13307	NM_011206	19253	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.055000	0.616915	
mm_32795.1	chr4	116995280	116995480	+	1	NA	NA	NA	32	NM_175244	76608	Mm.251420	NM_175244	ENSMUSG00000046861	Hectd3	1700064K09Rik|AI467540|AW743312	HECT domain containing 3	protein-coding	0.095000	0.696517	
mm_154076.1	chr19	56544549	56544749	-	1	NA	NA	NA	3573	NM_018831	55947	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0.020000	0.527363	-34(CACTTGAAAAGG,-,0.00)
mm_96338.1	chr11	66319655	66319855	+	1	NA	NA	NA	-151204	NM_001099633	237806	Mm.264210	NM_001099633	ENSMUSG00000056752	Dnah9	9030022M04|A230091C01|C230051G16|D11Ertd686e|Dnahc9|mKIAA0357	dynein, axonemal, heavy chain 9	protein-coding	0.000000	0.467662	
mm_172516.1	chr7	79790680	79790880	-	1	NA	NA	NA	2810	NM_008588	17292	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0.050000	0.606965	
mm_50155.1	chr6	41546185	41546385	+	1	NA	NA	NA	24509	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.407960	-49(TCTTATAAATCC,+,0.00)
mm_1774.1	chr1	78310235	78310435	+	1	NA	NA	NA	-11	NM_001004173	433323	Mm.276248	NM_001004173	ENSMUSG00000032908	Sgpp2	SPPase2|Spp2	sphingosine-1-phosphate phosphotase 2	protein-coding	0.135000	0.746269	
mm_88848.1	chr10	80930136	80930336	+	1	NA	NA	NA	145	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.040000	0.532338	
mm_157078.1	chrX	9256832	9257032	-	1	NA	NA	NA	-15852	NM_023500	22439	Mm.56468	NM_023500	ENSMUSG00000015342	Xk	1810038K19Rik|XRG1|Xkh	X-linked Kx blood group	protein-coding	0.005000	0.462687	
mm_71537.1	chr8	47093659	47093859	+	1	NA	NA	NA	106872	NM_177304	320981	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.000000	0.358209	
mm_102462.1	chr11	59848147	59848347	-	1	NA	NA	NA	174	NM_134029	103850	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	0.145000	0.736318	
mm_145950.1	chr18	67401763	67401963	+	1	NA	NA	NA	11132	NM_026473	67951	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	0.050000	0.616915	
mm_82595.1	chr9	21248344	21248544	-	1	NA	NA	NA	-1	NM_053190	94226	Mm.190619	NM_053190	ENSMUSG00000045087	S1pr5	Edg8|S1P5|lpB4	sphingosine-1-phosphate receptor 5	protein-coding	0.085000	0.676617	
mm_15116.1	chr2	153677094	153677294	+	1	NA	NA	NA	27745	NM_001271747	13436	Mm.89772	NM_010068	ENSMUSG00000027478	Dnmt3b	MmuIIIB	DNA methyltransferase 3B	protein-coding	0.020000	0.492537	
mm_7985.1	chr1	134234408	134234608	-	1	NA	NA	NA	348	NM_001291928	11539	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri	adenosine A1 receptor	protein-coding	0.010000	0.572139	
mm_159525.1	chr4	61673989	61674189	-	1	NA	NA	NA	1	NM_001134644	100048885	Mm.422695	NM_001134644		Gm2083	-	major urinary protein LOC100048885	protein-coding	0.010000	0.417910	-36(GAGTATATAAGG,-,0.00)
mm_56143.1	chr6	87809678	87809878	-	1	NA	NA	NA	-21	NM_133717	69834	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0.005000	0.517413	
mm_40561.1	chr5	61806629	61806829	+	1	NA	NA	NA	-2114	NM_019468	14380	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	0.005000	0.313433	85(GTGTTTTTAAGC,-,0.00)
mm_44857.1	chr5	34243397	34243597	-	1	NA	NA	NA	44827	NM_001015039	231125	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.005000	0.492537	-93(CCTTTTCTGGGA,+,0.00)
mm_29981.1	chr3	135407985	135408185	-	1	NA	NA	NA	15348	NM_025902	67006	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0.000000	0.417910	
mm_68757.1	chr7	121074448	121074648	-	1	NA	NA	NA	-18	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.025000	0.462687	-100(AACTCTAAATGG,-,0.00)
mm_152923.1	chr19	28011060	28011260	-	1	NA	NA	NA	6	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.065000	0.616915	
mm_25898.1	chr3	131110823	131111023	+	1	NA	NA	NA	626	NM_001276402	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.045000	0.482587	
mm_86130.1	chr9	116175815	116176015	-	1	NA	NA	NA	-552	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.020000	0.482587	
mm_17359.1	chr2	26639985	26640185	-	1	NA	NA	NA	159	NR_024068	72091	Mm.27103	NR_024068		Snhg7	2610002F03Rik|AI427062	small nucleolar RNA host gene 7	ncRNA	0.075000	0.582090	-94(CCCTATATACCC,+,0.00)
mm_57915.1	chr6	133851875	133852075	-	1	NA	NA	NA	1692	NM_010594	16483	Mm.13052	NM_010594	ENSMUSG00000032758	Kap	AW146435|FKSG22	kidney androgen regulated protein	protein-coding	0.010000	0.437811	
mm_65037.1	chr7	18560595	18560795	-	1	NA	NA	NA	6610	NM_001037168	545925	Mm.440302	NM_001037168	ENSMUSG00000070797	Psg27	EG545925|cea15	pregnancy-specific glycoprotein 27	protein-coding	0.010000	0.457711	
mm_64851.1	chr7	13034308	13034508	-	1	NA	NA	NA	369	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.040000	0.567164	
mm_24053.1	chr3	87906749	87906949	+	1	NA	NA	NA	-1	NM_001331051	15191	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0.130000	0.731343	
mm_156949.1	chrX	169986011	169986211	+	1	NA	NA	NA	-7194	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.030000	0.552239	
mm_77471.1	chr8	122427609	122427809	-	1	NA	NA	NA	5231	NM_001301284	13057	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.025000	0.567164	
mm_26856.1	chr3	14863829	14864029	-	1	NA	NA	NA	391	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.010000	0.398010	
mm_38546.1	chr4	141600780	141600980	-	1	NA	NA	NA	-956	NM_001163256	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.015000	0.582090	-66(GGCCATTAAGGG,-,0.00),-64(CCATTAAGGGGG,+,0.00)
mm_155365.1	chrX	71118582	71118782	+	1	NA	NA	NA	68426	NM_001081354	333639	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	0.010000	0.577114	
mm_59888.1	chr7	30306744	30306944	+	1	NA	NA	NA	-1909	NM_198027	233065	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	0.000000	0.542289	
mm_117490.1	chr13	78196333	78196533	-	1	NA	NA	NA	16	NM_001347538	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.020000	0.412935	
mm_85523.1	chr9	106453581	106453781	-	1	NA	NA	NA	-157	NM_021567	59092	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	0.130000	0.786070	
mm_85763.1	chr9	108824735	108824935	-	1	NA	NA	NA	-1485	NM_080437	107934	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	0.035000	0.537313	
mm_146228.1	chr18	77070657	77070857	+	1	NA	NA	NA	5077	NM_001164168	17344	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0.000000	0.388060	
mm_86808.1	chr10	20332077	20332277	+	1	NA	NA	NA	-15642	NM_027930	71804	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0.035000	0.457711	
mm_8689.1	chr1	157244432	157244632	-	1	NA	NA	NA	-135852	NM_001305063	73435	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	0.020000	0.502488	
mm_160253.1	chr7	107606525	107606725	+	1	NA	NA	NA	-219	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.010000	0.388060	
mm_89402.1	chr10	90576584	90576784	+	1	NA	NA	NA	-7	NM_001177396	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.035000	0.522388	
mm_108883.1	chr12	99965671	99965871	+	1	NA	NA	NA	1272	NM_001164427	217826	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.110000	0.676617	
mm_165743.1	chr3	107218570	107218770	+	1	NA	NA	NA	3062	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.020000	0.507463	
mm_151373.1	chr19	55932397	55932597	+	1	NA	NA	NA	37176	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.005000	0.373134	
mm_32513.1	chr4	108619860	108620060	+	1	NA	NA	NA	4	NM_177045	319965	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	0.150000	0.761194	
mm_149695.1	chr19	21274345	21274545	+	1	NA	NA	NA	2167	NM_009551	22682	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.005000	0.398010	-35(AAGTATTAAAGC,-,0.00)
mm_126734.1	chr15	85654598	85654798	+	1	NA	NA	NA	-49075	NR_110483	102800312	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0.020000	0.412935	
mm_131761.1	chr16	22891230	22891430	+	1	NA	NA	NA	-685	NR_075099	11625	Mm.197554	NM_013465	ENSMUSG00000022868	Ahsg	-	alpha-2-HS-glycoprotein	protein-coding	0.005000	0.502488	
mm_110078.1	chr12	24493617	24493817	-	1	NA	NA	NA	-4864	NM_020614	21340	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	0.080000	0.582090	
mm_37998.1	chr4	133672892	133673092	-	1	NA	NA	NA	-345	NM_001145956	230801	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.045000	0.582090	
mm_72227.1	chr8	72761782	72761982	+	1	NA	NA	NA	223	NM_007975	14065	Mm.12948	NM_007975	ENSMUSG00000050147	F2rl3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding	0.020000	0.621891	
mm_164874.1	chr18	57878200	57878400	+	1	NA	NA	NA	-378	NM_009194	20496	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0.120000	0.666667	
mm_116911.1	chr13	55483627	55483827	-	1	NA	NA	NA	4349	NM_001177371	56320	Mm.19016	NM_019813	ENSMUSG00000034675	Dbn1	-	drebrin 1	protein-coding	0.050000	0.611940	
mm_77237.1	chr8	115704941	115705141	-	1	NA	NA	NA	1853	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.010000	0.457711	
mm_48326.1	chr5	138995916	138996116	-	1	NA	NA	NA	-1063	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.085000	0.701493	
mm_32278.1	chr4	102825350	102825550	+	1	NA	NA	NA	65315	NM_001285859	73094	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0.005000	0.338308	
mm_86790.1	chr10	20205166	20205366	+	1	NA	NA	NA	-3173	NM_001101561	621697	Mm.440587	NM_001101561		Rpl32l	EG621697|Gm6251	ribosomal protein L32-like	protein-coding	0.030000	0.507463	
mm_18654.1	chr2	69789442	69789642	-	1	NA	NA	NA	-56	NM_001077684	75051	Mm.195726	NM_001077684	ENSMUSG00000070883	Ccdc173	4930525K21Rik|4930578N16Rik	coiled-coil domain containing 173	protein-coding	0.060000	0.552239	
mm_129749.1	chr15	82338681	82338881	-	1	NA	NA	NA	45	NM_008669	17939	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	0.080000	0.601990	
mm_123314.1	chr14	62414400	62414600	-	1	NA	NA	NA	41789	NM_001204340	239134	Mm.236557	NM_172810	ENSMUSG00000021933	Gucy1b2	B930025B03|GC-SB2	guanylate cyclase 1, soluble, beta 2	protein-coding	0.010000	0.477612	
mm_50547.1	chr6	49046616	49046816	+	1	NA	NA	NA	10198	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.015000	0.527363	
mm_92750.1	chr10	81014820	81015020	-	1	NA	NA	NA	5	NM_010319	14708	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.065000	0.646766	
mm_106544.1	chr11	120579107	120579307	-	1	NA	NA	NA	2413	NM_133796	192662	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.030000	0.582090	
mm_159602.1	chr4	128759029	128759229	+	1	NA	NA	NA	-129	NM_001009819	215493	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	0.010000	0.467662	33(CCCTTAATGGGA,+,0.00)
mm_169081.1	chr13	3376731	3376931	-	1	NA	NA	NA	-101472	NR_015522	76937	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0.010000	0.452736	
mm_55028.1	chr6	48902915	48903115	-	1	NA	NA	NA	-1971	NM_001161622	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.030000	0.477612	
mm_55628.1	chr6	72314537	72314737	-	1	NA	NA	NA	10027	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.005000	0.422886	
mm_166686.1	chr6	103460678	103460878	+	1	NA	NA	NA	-50098	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.000000	0.378109	44(TCTTATATAAGC,+,0.00),44(TCTTATATAAGC,-,0.00)
mm_39288.1	chr5	4023211	4023411	+	1	NA	NA	NA	81386	NM_020010	13121	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	0.030000	0.562189	
mm_110612.1	chr12	56613077	56613277	-	1	NA	NA	NA	107	NM_008701	18094	Mm.129420	NM_008701	ENSMUSG00000058669	Nkx2-9	Nkx-2.9|Nkx2-8|Nkx2.9|tinman	NK2 homeobox 9	protein-coding	0.055000	0.597015	
mm_161036.1	chr12	29534829	29535029	+	1	NA	NA	NA	24	NM_001093776	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.055000	0.601990	
mm_105946.1	chr11	115276862	115277062	-	1	NA	NA	NA	7	NM_007997	14149	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	-	ferredoxin reductase	protein-coding	0.055000	0.611940	
mm_38982.1	chr4	150944753	150944953	-	1	NA	NA	NA	16854	NM_001077509	21942	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.015000	0.512438	
mm_152138.1	chr19	7039891	7040091	-	1	NA	NA	NA	35	NM_016737	20867	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	0.085000	0.592040	-68(GCCTATAAAAGG,-,0.00)
mm_6057.1	chr1	60486535	60486735	-	1	NA	NA	NA	77016	NM_001198570	329165	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	0.005000	0.398010	
mm_9436.1	chr1	172526278	172526478	-	1	NA	NA	NA	5248	NM_027972	71870	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	0.015000	0.502488	
mm_69162.1	chr7	127208364	127208564	-	1	NA	NA	NA	4	NM_144522	68449	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	0.180000	0.855721	
mm_37390.1	chr4	121017131	121017331	-	1	NA	NA	NA	16	NM_133716	69780	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	0.080000	0.701493	
mm_95090.1	chr11	33872348	33872548	+	1	NA	NA	NA	-28863	NM_001290690	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.000000	0.447761	
mm_52985.1	chr6	123263961	123264161	+	1	NA	NA	NA	1954	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.010000	0.507463	
mm_93616.1	chr10	117277341	117277541	-	1	NA	NA	NA	4831	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.010000	0.422886	
mm_31511.1	chr4	53714071	53714271	+	1	NA	NA	NA	-11	NM_139309	246179	Mm.247210	NM_139309	ENSMUSG00000028414	Fktn	D830030O17Rik|Fcmd	fukutin	protein-coding	0.095000	0.621891	
mm_17746.1	chr2	32714406	32714606	-	1	NA	NA	NA	-1534	NR_039536	100628606		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0.005000	0.502488	47(CTCCTTTAAAGC,-,0.00),48(TCCTTTAAAGCC,+,0.00),49(CCTTTAAAGCCC,+,0.00)
mm_154686.1	chrX	7922289	7922489	+	1	NA	NA	NA	2567	NM_013892	30052	Mm.4881	NM_013892	ENSMUSG00000039278	Pcsk1n	AI848336|KEP|PEN|PEN19|PEN20|Pan3|SAAS|SAASCT|bLEN|lLEN|proSAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding	0.115000	0.731343	
mm_51832.1	chr6	89643939	89644139	+	1	NA	NA	NA	51	NM_001178058	232223	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TR2|Tgr	thioredoxin reductase 3	protein-coding	0.145000	0.741294	
mm_6592.1	chr1	75264184	75264384	-	1	NA	NA	NA	-76	NM_008985	19275	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	0.050000	0.626866	
mm_9074.1	chr1	168406178	168406378	-	1	NA	NA	NA	25891	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.010000	0.417910	
mm_74349.1	chr8	127546083	127546283	+	1	NA	NA	NA	246531	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.000000	0.393035	
mm_39279.1	chr5	3927732	3927932	+	1	NA	NA	NA	-354	NM_194462	100986	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	0.015000	0.487562	
mm_172372.1	chr7	126299844	126300044	-	1	NA	NA	NA	27325	NM_145587	104175	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.025000	0.427861	-63(GACCTTATAAAC,-,0.00),-61(CCTTATAAACTA,+,0.00)
mm_122976.1	chr14	54978571	54978771	-	1	NA	NA	NA	-2895	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.015000	0.582090	
mm_168979.1	chr12	91474635	91474835	-	1	NA	NA	NA	73742	NM_011648	22095	Mm.173847	NM_011648	ENSMUSG00000020963	Tshr	AI481368|hypothroid|hyt|pet	thyroid stimulating hormone receptor	protein-coding	0.065000	0.651741	
mm_50167.1	chr6	41554419	41554619	+	1	NA	NA	NA	32743	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.517413	
mm_166553.1	chr6	41544778	41544978	+	1	NA	NA	NA	23102	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.000000	0.417910	
mm_161493.1	chr15	86033766	86033966	-	1	NA	NA	NA	-89	NM_009886	12614	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	0.155000	0.835821	
mm_90955.1	chr10	13193062	13193262	-	1	NA	NA	NA	-25	NM_181470	353258	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	0.095000	0.691542	
mm_149214.1	chr19	9984470	9984670	+	1	NA	NA	NA	1924	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.015000	0.497512	
mm_5163.1	chr1	10037850	10038050	-	1	NA	NA	NA	209	NR_102282	26754	Mm.402384	NM_013715	ENSMUSG00000025917	Cops5	AI303502|CSN5|Jab1|Mov34|Sgn5	COP9 signalosome subunit 5	protein-coding	0.080000	0.616915	
mm_87947.1	chr10	62980186	62980386	+	1	NA	NA	NA	63	NM_027425	70432	Mm.234587	NM_027425	ENSMUSG00000020070	Rufy2	2610111M19Rik|AI844453|Denn|LZ-FYVE|ZFYVE13	RUN and FYVE domain-containing 2	protein-coding	0.145000	0.766169	
mm_14355.1	chr2	129615389	129615589	+	1	NA	NA	NA	22320	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.015000	0.497512	-62(GTCTATAAATGC,-,0.00)
mm_160666.1	chr9	121641494	121641694	-	1	NA	NA	NA	-28	NM_026915	69032	Mm.33351	NM_026915	ENSMUSG00000032530	Lyzl4	1810009N24Rik|AI504271|Lyc4|Lyza	lysozyme-like 4	protein-coding	0.030000	0.577114	
mm_77254.1	chr8	115706606	115706806	-	1	NA	NA	NA	188	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.090000	0.631841	
mm_155248.1	chrX	57223610	57223810	+	1	NA	NA	NA	11567	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.000000	0.472637	
mm_139210.1	chr17	47728637	47728837	+	1	NA	NA	NA	1895	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.020000	0.532338	
mm_31756.1	chr4	63362347	63362547	+	1	NA	NA	NA	-2	NM_011016	18406	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0.010000	0.552239	-34(TATTATAAAAGC,-,0.00)
mm_59292.1	chr7	25077182	25077382	+	1	NA	NA	NA	36	NM_175477	232976	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	0.115000	0.696517	
mm_28199.1	chr3	88254614	88254814	-	1	NA	NA	NA	-30	NM_021375	58176	Mm.103777	NM_021375	ENSMUSG00000103766	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	0.080000	0.711443	
mm_61172.1	chr7	59314234	59314434	+	1	NA	NA	NA	9815	NR_015479	330544	Mm.9002	NR_015479	ENSMUSG00000100826	C230091D08Rik	-	RIKEN cDNA C230091D08 gene	ncRNA	0.005000	0.373134	
mm_37139.1	chr4	116821411	116821611	-	1	NA	NA	NA	-3	NM_146256	242642	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	0.060000	0.626866	
mm_128025.1	chr15	25057011	25057211	-	1	NA	NA	NA	356653	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.005000	0.457711	
mm_105637.1	chr11	106998387	106998587	-	1	NA	NA	NA	1038	NM_010655	16647	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.025000	0.407960	
mm_131282.1	chr16	11143879	11144079	+	1	NA	NA	NA	-9447	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.080000	0.611940	
mm_89073.1	chr10	82985389	82985589	+	1	NA	NA	NA	-8	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.085000	0.656716	
mm_48863.1	chr5	149825242	149825442	-	1	NA	NA	NA	-13591	NR_077242	100861794	Mm.402054	NR_077242	ENSMUSG00000106740	Gm21221	-	predicted gene, 21221	ncRNA	0.010000	0.512438	
mm_5438.1	chr1	34842871	34843071	-	1	NA	NA	NA	79	NM_001160235	214469	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.185000	0.810945	
mm_39903.1	chr5	31251603	31251803	+	1	NA	NA	NA	-3	NM_027221	69815	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	0.110000	0.741294	
mm_139420.1	chr17	53479339	53479539	+	1	NA	NA	NA	205	NM_025887	271457	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0.140000	0.711443	
mm_63857.1	chr7	135671511	135671711	+	1	NA	NA	NA	-19297	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.000000	0.457711	
mm_14301.1	chr2	129065909	129066109	+	1	NA	NA	NA	62	NM_027192	69737	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	0.140000	0.786070	
mm_13158.1	chr2	92554382	92554582	+	1	NA	NA	NA	-37724	NR_106080	102466819		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	0.005000	0.487562	
mm_18832.1	chr2	74715924	74716124	-	1	NA	NA	NA	106	NR_027899	73429	Mm.443313	NR_027899		Hoxd3os1	1700064D17Rik|1700109F18Rik	homeobox D3, opposite strand 1	ncRNA	0.065000	0.656716	
mm_125372.1	chr15	39962634	39962834	+	1	NA	NA	NA	85	NR_045719	105976	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0.020000	0.482587	
mm_62318.1	chr7	100319000	100319200	+	1	NA	NA	NA	33580	NM_177161	320452	Mm.150294	NM_177161	ENSMUSG00000051048	P4ha3	D930031A02Rik	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III	protein-coding	0.020000	0.547264	
mm_162448.1	chr1	120982900	120983100	+	1	NA	NA	NA	-104405	NR_038008	98452	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0.000000	0.393035	
mm_95681.1	chr11	54141818	54142018	+	1	NA	NA	NA	40994	NM_011031	18452	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.010000	0.507463	
mm_99040.1	chr11	98960673	98960873	+	1	NA	NA	NA	302	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.075000	0.701493	
mm_92372.1	chr10	76237693	76237893	-	1	NA	NA	NA	72	NR_126571	15468	Mm.32020	NM_133182	ENSMUSG00000020230	Prmt2	AI504737|Hrmt1l1	protein arginine N-methyltransferase 2	protein-coding	0.070000	0.611940	
mm_43694.1	chr5	139161726	139161926	+	1	NA	NA	NA	11603	NM_001081265	433956	Mm.5547	NM_001081265	ENSMUSG00000025857	Dnaaf5	BC053401|C76907|Heatr2	dynein, axonemal assembly factor 5	protein-coding	0.035000	0.601990	
mm_168212.1	chr10	75860124	75860324	-	1	NA	NA	NA	26	NM_010798	17319	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor	protein-coding	0.100000	0.651741	
mm_90243.1	chr10	121488756	121488956	+	1	NA	NA	NA	-12606	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.020000	0.537313	
mm_34631.1	chr4	150613620	150613820	+	1	NA	NA	NA	38454	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.025000	0.512438	
mm_55477.1	chr6	68910350	68910550	-	1	NA	NA	NA	416724	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.487562	
mm_153853.1	chr19	46378074	46378274	-	1	NA	NA	NA	17561	NM_016860	54130	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0.030000	0.572139	
mm_72535.1	chr8	83995784	83995984	+	1	NA	NA	NA	-1788	NM_001081415	666704	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.010000	0.497512	
mm_15814.1	chr2	164502528	164502728	+	1	NA	NA	NA	5103	NM_133779	78928	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	0.030000	0.601990	-55(CCTTATCGGGCC,+,0.00)
mm_147160.1	chr18	36713261	36713461	-	1	NA	NA	NA	13454	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.005000	0.323383	
mm_76429.1	chr8	84978357	84978557	-	1	NA	NA	NA	291	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.125000	0.691542	
mm_117583.1	chr13	89578352	89578552	-	1	NA	NA	NA	37816	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.045000	0.467662	40(TCTTTAAAACGC,+,0.00)
mm_430.1	chr1	34473180	34473380	+	1	NA	NA	NA	13534	NM_011206	19253	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.045000	0.562189	
mm_112695.1	chr13	17695078	17695278	+	1	NA	NA	NA	-235	NM_025479	66308	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	0.075000	0.592040	
mm_41584.1	chr5	93205562	93205762	+	1	NA	NA	NA	833	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.045000	0.512438	
mm_145189.1	chr18	49832499	49832699	+	1	NA	NA	NA	-398	NM_001081371	240283	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0.105000	0.641791	-34(GACTAGAAAAGG,-,0.00)
mm_171549.1	chr4	147086960	147087160	-	1	NA	NA	NA	-18624	NR_045446	71270	Mm.460830	NR_045446	ENSMUSG00000093617	4933438K21Rik	-	RIKEN cDNA 4933438K21 gene	ncRNA	0.060000	0.567164	
mm_120491.1	chr14	65979728	65979928	+	1	NA	NA	NA	11345	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.030000	0.552239	
mm_25005.1	chr3	97658215	97658415	+	1	NA	NA	NA	103	NM_182997	108097	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.120000	0.646766	
mm_31589.1	chr4	57845183	57845383	+	1	NA	NA	NA	35	NM_001035532	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.040000	0.557214	
mm_99791.1	chr11	107428212	107428412	+	1	NA	NA	NA	42408	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.030000	0.472637	
mm_129790.1	chr15	82836480	82836680	-	1	NA	NA	NA	-42335	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.000000	0.308458	
mm_61533.1	chr7	79053151	79053351	+	1	NA	NA	NA	72	NR_132432	102633600	Mm.382916	NR_132432	ENSMUSG00000097441	Gm26633	-	predicted gene, 26633	ncRNA	0.090000	0.691542	
mm_24726.1	chr3	95282496	95282696	+	1	NA	NA	NA	-339	NM_133858	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.020000	0.482587	
mm_121588.1	chr14	7808213	7808413	-	1	NA	NA	NA	-9644	NM_001081427	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.000000	0.537313	
mm_109485.1	chr12	111437808	111438008	+	1	NA	NA	NA	-4753	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.005000	0.527363	
mm_79474.1	chr9	56937382	56937582	+	1	NA	NA	NA	-18	NM_133976	102462	Mm.12864	NM_133976	ENSMUSG00000032288	Imp3	1190002L16Rik|AI256594	IMP3, U3 small nucleolar ribonucleoprotein	protein-coding	0.060000	0.502488	
mm_26199.1	chr3	138526437	138526637	+	1	NA	NA	NA	116	NR_035481	100316706		NR_035481	ENSMUSG00000088373	Mir1956	mir-1956|mmu-mir-1956	microRNA 1956	ncRNA	0.060000	0.567164	
mm_150986.1	chr19	46516066	46516266	+	1	NA	NA	NA	14518	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.010000	0.452736	
mm_70969.1	chr8	27042511	27042711	+	1	NA	NA	NA	56	NM_054057	114863	Mm.277501	NM_054057	ENSMUSG00000031485	Prosc	1700024N20Rik|2200002F22Rik	proline synthetase co-transcribed	protein-coding	0.105000	0.691542	
mm_62291.1	chr7	99906445	99906645	+	1	NA	NA	NA	47327	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.005000	0.512438	
mm_4900.1	chr1	189798432	189798632	+	1	NA	NA	NA	70264	NM_008976	19250	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|OTTMUSG00000022087|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	0.040000	0.532338	
mm_166152.1	chr5	7179940	7180140	+	1	NA	NA	NA	-124124	NM_027603	70920	Mm.158494	NM_027603	ENSMUSG00000040514	4921511H03Rik	-	RIKEN cDNA 4921511H03 gene	protein-coding	0.020000	0.492537	
mm_171369.1	chr4	119282133	119282333	-	1	NA	NA	NA	12280	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.055000	0.542289	
mm_155642.1	chrX	85269397	85269597	+	1	NA	NA	NA	19820	NM_028046	71996	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	0.030000	0.567164	
mm_114141.1	chr13	55290171	55290371	+	1	NA	NA	NA	31709	NM_009000	19336	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	0.005000	0.378109	
mm_158764.1	chrX	166518479	166518679	-	1	NA	NA	NA	-8101	NM_001007577	245695	Mm.336318	NM_001007577	ENSMUSG00000051224	Tceanc	A630018P17Rik|Gm390	transcription elongation factor A (SII) N-terminal and central domain containing	protein-coding	0.045000	0.512438	-34(TCCCTTTAAAAG,-,0.00),-33(CCCTTTAAAAGG,+,0.00),-33(CCCTTTAAAAGG,-,0.00),-32(CCTTTAAAAGGA,+,0.00)
mm_64724.1	chr7	4658933	4659133	-	1	NA	NA	NA	-83	NM_172894	243819	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.130000	0.726368	
mm_170692.1	chr2	132253051	132253251	-	1	NA	NA	NA	29	NM_011045	18538	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0.095000	0.621891	
mm_112942.1	chr13	20986340	20986540	+	1	NA	NA	NA	86859	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.010000	0.407960	
mm_120582.1	chr14	69767448	69767648	+	1	NA	NA	NA	76	NM_020275	21933	Mm.193430	NM_020275	ENSMUSG00000022074	Tnfrsf10b	DR5|KILLER|Ly98|MK|TRAILR2|TRICK2A|TRICK2B|TRICKB	tumor necrosis factor receptor superfamily, member 10b	protein-coding	0.065000	0.582090	
mm_4100.1	chr1	167350148	167350348	+	1	NA	NA	NA	257	NM_019993	56752	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.095000	0.626866	
mm_29672.1	chr3	122801901	122802101	-	1	NA	NA	NA	-21	NR_045168	71647	Mm.449992	NR_045168	ENSMUSG00000106583	4930447N08Rik	-	RIKEN cDNA 4930447N08 gene	ncRNA	0.040000	0.567164	
mm_138208.1	chr17	34304952	34305152	+	1	NA	NA	NA	-815	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.020000	0.497512	
mm_129598.1	chr15	79834173	79834373	-	1	NA	NA	NA	60	NM_001013360	504193	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	0.145000	0.751244	
mm_6508.1	chr1	74304261	74304461	-	1	NA	NA	NA	-25	NM_027154	69660	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.040000	0.507463	
mm_53331.1	chr6	129233286	129233486	+	1	NA	NA	NA	4659	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.005000	0.437811	-37(CTTTTTATAAGG,+,0.00),-37(CTTTTTATAAGG,-,0.00)
mm_29922.1	chr3	131490560	131490760	-	1	NA	NA	NA	-74108	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.070000	0.661692	
mm_66921.1	chr7	60939782	60939982	-	1	NA	NA	NA	675445	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.005000	0.452736	
mm_47157.1	chr5	120683031	120683231	-	1	NA	NA	NA	28538	NM_008052	14357	Mm.1645	NM_008052	ENSMUSG00000029603	Dtx1	Fxit1|mKIAA4160	deltex 1, E3 ubiquitin ligase	protein-coding	0.030000	0.626866	
mm_133870.1	chr16	96372597	96372797	+	1	NA	NA	NA	10933	NM_028078	72058	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.020000	0.512438	
mm_161104.1	chr12	102470015	102470215	+	1	NA	NA	NA	205	NM_013747	27277	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	0.005000	0.288557	74(TGACATATAAGG,-,0.00)
mm_163058.1	chr11	62005240	62005440	+	1	NA	NA	NA	48577	NM_001310526	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.025000	0.572139	
mm_19427.1	chr2	91931901	91932101	-	1	NA	NA	NA	-142	NM_001291482	17242	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.040000	0.611940	
mm_3717.1	chr1	154009948	154010148	+	1	NA	NA	NA	110119	NM_008131	14645	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.010000	0.407960	
mm_40923.1	chr5	75981134	75981334	+	1	NA	NA	NA	-2806	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.030000	0.467662	-28(CCGTTTATAAAC,-,0.00),-26(GTTTATAAACCG,+,0.00)
mm_95334.1	chr11	46810701	46810901	+	1	NA	NA	NA	2	NM_178759	276891	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.020000	0.497512	
mm_131921.1	chr16	23317541	23317741	+	1	NA	NA	NA	27171	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.000000	0.482587	
mm_80938.1	chr9	102717190	102717390	+	1	NA	NA	NA	-514	NM_019764	56332	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0.045000	0.527363	
mm_62581.1	chr7	105374963	105375163	+	1	NA	NA	NA	25	NM_001329995	100503879	Mm.380109	NM_001195727	ENSMUSG00000078611	Gm5901	EG545989	predicted gene 5901	protein-coding	0.005000	0.577114	
mm_156957.1	chrX	169989173	169989373	+	1	NA	NA	NA	-10356	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.055000	0.611940	
mm_151138.1	chr19	52613504	52613704	+	1	NA	NA	NA	-309577	NR_030678	100043450	Mm.145594	NR_030678		AA387883	-	expressed sequence AA387883	ncRNA	0.020000	0.452736	
mm_6782.1	chr1	84139191	84139391	-	1	NA	NA	NA	79670	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.358209	
mm_48892.1	chr5	151428056	151428256	-	1	NA	NA	NA	21652	NR_131166	100042166	Mm.443286	NR_131166	ENSMUSG00000097321	Gm3704	-	predicted gene 3704	ncRNA	0.010000	0.497512	
mm_141385.1	chr17	29090764	29090964	-	1	NA	NA	NA	-115	NM_001111099	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.010000	0.547264	
mm_12076.1	chr2	59779397	59779597	+	1	NA	NA	NA	103109	NM_001159636	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.040000	0.552239	
mm_48084.1	chr5	136986757	136986957	-	1	NA	NA	NA	47	NM_001310747	70103	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	0.070000	0.572139	
mm_59322.1	chr7	25301434	25301634	+	1	NA	NA	NA	175	NM_001081294	623131	Mm.172160	NM_001081294	ENSMUSG00000058741	Prr19	EG623131	proline rich 19	protein-coding	0.035000	0.641791	
mm_162223.1	chrX	144688852	144689052	+	1	NA	NA	NA	45	NM_001033795	619287	Mm.387961	NM_001033795	ENSMUSG00000071679	Zcchc16	C230031A03Rik|Mar4	zinc finger, CCHC domain containing 16	protein-coding	0.070000	0.731343	
mm_34567.1	chr4	150029745	150029945	+	1	NA	NA	NA	-20822	NM_173371	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.025000	0.597015	
mm_51663.1	chr6	86195333	86195533	+	1	NA	NA	NA	206	NM_031199	21802	Mm.137222	NM_031199	ENSMUSG00000029999	Tgfa	wa-1|wa1	transforming growth factor alpha	protein-coding	0.175000	0.796020	
mm_34880.1	chr4	155582383	155582583	+	1	NA	NA	NA	18668	NM_001159637	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.000000	0.552239	
mm_6618.1	chr1	75506376	75506576	-	1	NA	NA	NA	-24	NM_001310679	98733	Mm.236454	NM_178884	ENSMUSG00000026211	Obsl1	AW822216	obscurin-like 1	protein-coding	0.040000	0.691542	
mm_162896.1	chr10	112399658	112399858	+	1	NA	NA	NA	128635	NM_001025581	268345	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0.000000	0.472637	-75(CAGTTTTAAAGC,-,0.00),-53(GGGTATAAATGG,-,0.00)
mm_101339.1	chr11	23519609	23519809	-	1	NA	NA	NA	233	NM_001110133	67358	Mm.87328	NM_026105	ENSMUSG00000020286	1700093K21Rik	-	RIKEN cDNA 1700093K21 gene	protein-coding	0.015000	0.522388	
mm_139841.1	chr17	69262129	69262329	+	1	NA	NA	NA	14977	NR_045428	69750	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.015000	0.507463	
mm_33645.1	chr4	133039272	133039472	+	1	NA	NA	NA	27866	NM_146155	230793	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.110000	0.796020	
mm_37304.1	chr4	119279013	119279213	-	1	NA	NA	NA	15400	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.045000	0.517413	
mm_50344.1	chr6	48554846	48555046	+	1	NA	NA	NA	147	NM_177736	243371	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	0.045000	0.562189	
mm_64562.1	chr7	144838502	144838702	+	1	NA	NA	NA	-10	NM_008007	14174	Mm.4947	NM_008007	ENSMUSG00000031074	Fgf3	Fgf-3|Int-2|Int-P	fibroblast growth factor 3	protein-coding	0.095000	0.716418	
mm_125022.1	chr15	25713778	25713978	+	1	NA	NA	NA	91328	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.080000	0.601990	
mm_113043.1	chr13	23574342	23574542	+	1	NA	NA	NA	61	NM_178188	319165	Mm.390553	NM_178188	ENSMUSG00000071478	Hist1h2ad	-	histone cluster 1, H2ad	protein-coding	0.060000	0.512438	
mm_158623.1	chrX	152769579	152769779	-	1	NA	NA	NA	-193	NM_172441	110380	Mm.40796	NM_172441	ENSMUSG00000045180	Shroom2	4832440C16|Apxl|C630003H05Rik|Shrm2	shroom family member 2	protein-coding	0.110000	0.711443	
mm_144843.1	chr18	36563584	36563784	+	1	NA	NA	NA	3081	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.020000	0.368159	
mm_113344.1	chr13	31803751	31803951	+	1	NA	NA	NA	-2795	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.040000	0.532338	-6(TTTTTTAAACCG,+,0.00)
mm_44032.1	chr5	147431495	147431695	+	1	NA	NA	NA	1015	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.025000	0.457711	
mm_41586.1	chr5	93205949	93206149	+	1	NA	NA	NA	446	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.135000	0.751244	
mm_165114.1	chr19	58731996	58732196	-	1	NA	NA	NA	3209	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.025000	0.552239	
mm_30204.1	chr3	144720291	144720491	-	1	NA	NA	NA	-56	NM_001282037	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.125000	0.766169	
mm_74969.1	chr8	27042921	27043121	-	1	NA	NA	NA	466	NM_054057	114863	Mm.277501	NM_054057	ENSMUSG00000031485	Prosc	1700024N20Rik|2200002F22Rik	proline synthetase co-transcribed	protein-coding	0.115000	0.646766	
mm_155808.1	chrX	99136082	99136282	+	1	NA	NA	NA	121	NM_010110	13641	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	0.085000	0.631841	
mm_107035.1	chr12	13501111	13501311	+	1	NA	NA	NA	126435	NR_136761	102639399	Mm.122052	NR_136761		Gm35725	-	predicted gene, 35725	ncRNA	0.020000	0.487562	
mm_113089.1	chr13	23934337	23934537	+	1	NA	NA	NA	-25	NM_175658	319163	Mm.377876	NM_175658	ENSMUSG00000060081	Hist1h2aa	Th2a	histone cluster 1, H2aa	protein-coding	0.030000	0.482587	-35(GACTATAAATAG,-,0.00),-33(CTATAAATAGGC,+,0.00)
mm_108941.1	chr12	102128934	102129134	+	1	NA	NA	NA	-385	NM_172152	238384	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0.135000	0.726368	
mm_103626.1	chr11	78697495	78697695	-	1	NA	NA	NA	-170	NM_008702	18099	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0.050000	0.587065	
mm_138660.1	chr17	35868533	35868733	+	1	NA	NA	NA	2018	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.035000	0.656716	
mm_134138.1	chr16	10683490	10683690	-	1	NA	NA	NA	101946	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.015000	0.502488	
mm_155947.1	chrX	104947595	104947795	+	1	NA	NA	NA	-90428	NM_053206	272790	Mm.165776	NM_053206	ENSMUSG00000031224	Magee2	9630059J11Rik|BB131182|Mage-e2	melanoma antigen, family E, 2	protein-coding	0.040000	0.477612	
mm_69936.1	chr7	142095126	142095326	-	1	NA	NA	NA	58	NM_008748	18218	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	0.175000	0.815920	
mm_168456.1	chr11	43630969	43631169	-	1	NA	NA	NA	-29507	NM_008375	16204	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0.040000	0.517413	-33(TTCTATAAAAGT,-,0.00)
mm_9569.1	chr1	173979664	173979864	-	1	NA	NA	NA	3080	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.000000	0.318408	
mm_19808.1	chr2	110314140	110314340	-	1	NA	NA	NA	-8515	NM_130452	170442	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	0.015000	0.487562	
mm_155378.1	chrX	71663568	71663768	+	1	NA	NA	NA	1	NM_001308501	14765	Mm.33336	NM_010340	ENSMUSG00000056380	Gpr50	H9	G-protein-coupled receptor 50	protein-coding	0.035000	0.582090	-33(GGCTTTAAAAGC,-,0.00),-32(GCTTTAAAAGCT,+,0.00)
mm_169365.1	chr14	32201771	32201971	-	1	NA	NA	NA	20	NM_016897	53600	Mm.303703	NM_016897	ENSMUSG00000013701	Timm23	Tim23	translocase of inner mitochondrial membrane 23	protein-coding	0.120000	0.681592	
mm_20227.1	chr2	125782740	125782940	-	1	NA	NA	NA	30	NM_177608	70354	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.110000	0.746269	
mm_2182.1	chr1	88702186	88702386	+	1	NA	NA	NA	-95	NM_177305	320982	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.150000	0.741294	
mm_106827.1	chr12	7992844	7993044	+	1	NA	NA	NA	15267	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.447761	
mm_90981.1	chr10	13553047	13553247	-	1	NA	NA	NA	-5	NM_001347361	56535	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	0.115000	0.671642	
mm_77581.1	chr8	123750992	123751192	-	1	NA	NA	NA	17134	NR_040702	234863	Mm.246601	NR_040702	ENSMUSG00000110599	6030466F02Rik	-	RIKEN cDNA 6030466F02 gene	ncRNA	0.000000	0.393035	
mm_53326.1	chr6	129229305	129229505	+	1	NA	NA	NA	8640	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.005000	0.447761	-59(TTCCATTTAAGG,-,0.00),-57(CCATTTAAGGGT,+,0.00)
mm_79265.1	chr9	50753129	50753329	+	1	NA	NA	NA	258	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.030000	0.557214	-28(GCATATATAAGG,-,0.00)
mm_16051.1	chr2	167760134	167760334	+	1	NA	NA	NA	69057	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.010000	0.582090	
mm_13864.1	chr2	119742250	119742450	+	1	NA	NA	NA	13	NM_146125	228550	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	0.155000	0.830846	
mm_57778.1	chr6	129238394	129238594	-	1	NA	NA	NA	-12	NR_040266	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.035000	0.567164	
mm_56206.1	chr6	89004069	89004269	-	1	NA	NA	NA	-91941	NR_134978	232217	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	0.010000	0.507463	
mm_36980.1	chr4	109657733	109657933	-	1	NA	NA	NA	7539	NM_007671	12580	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	protein-coding	0.040000	0.512438	
mm_80941.1	chr9	102717639	102717839	+	1	NA	NA	NA	-65	NM_019764	56332	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0.095000	0.661692	
mm_140397.1	chr17	87636005	87636205	+	1	NA	NA	NA	126	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.060000	0.502488	
mm_46444.1	chr5	105102131	105102331	-	1	NA	NA	NA	8061	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.005000	0.412935	-78(GCCTATATAAAA,-,0.00)
mm_46711.1	chr5	110378059	110378259	-	1	NA	NA	NA	8968	NM_028596	381668	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.070000	0.651741	
mm_102895.1	chr11	69423765	69423965	-	1	NA	NA	NA	-10190	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.025000	0.447761	
mm_166959.1	chr7	44478916	44479116	+	1	NA	NA	NA	-5501	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.472637	
mm_32387.1	chr4	106587184	106587384	+	1	NA	NA	NA	26246	NM_053272	74754	Mm.133370	NM_053272	ENSMUSG00000034926	Dhcr24	2310076D10Rik|5830417J06Rik|mKIAA0018	24-dehydrocholesterol reductase	protein-coding	0.015000	0.597015	
mm_141509.1	chr17	31654834	31655034	-	1	NA	NA	NA	3820	NM_024187	108121	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik|35kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	0.015000	0.363184	
mm_70314.1	chr8	4240038	4240238	+	1	NA	NA	NA	33	NM_001291778	26400	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	0.000000	0.477612	
mm_35578.1	chr4	41740785	41740985	-	1	NA	NA	NA	474	NM_001286540	18391	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0.070000	0.641791	
mm_93844.1	chr10	121626383	121626583	-	1	NA	NA	NA	-167	NM_001081056	73192	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	0.125000	0.711443	
mm_100833.1	chr11	5478255	5478455	-	1	NA	NA	NA	-33508	NM_001080924	407821	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0.020000	0.592040	
mm_31505.1	chr4	53566095	53566295	+	1	NA	NA	NA	-65276	NM_176966	319636	Mm.103464	NM_176966	ENSMUSG00000054752	Fsd1l	A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl|OTTMUSG00000007002	fibronectin type III and SPRY domain containing 1-like	protein-coding	0.005000	0.368159	
mm_32465.1	chr4	107679330	107679530	+	1	NA	NA	NA	4732	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.035000	0.666667	
mm_78927.1	chr9	45055136	45055336	+	1	NA	NA	NA	55	NM_001093749	319742	Mm.49611	NM_176993	ENSMUSG00000070305	Mpzl3	5430427F17Rik|A530065I17Rik|rc	myelin protein zero-like 3	protein-coding	0.060000	0.601990	
mm_93158.1	chr10	93161636	93161836	-	1	NA	NA	NA	860	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.045000	0.597015	
mm_159110.1	chr2	45110365	45110565	-	1	NA	NA	NA	-188	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.050000	0.527363	
mm_56323.1	chr6	92480884	92481084	-	1	NA	NA	NA	408	NM_001134460	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.020000	0.567164	
mm_77568.1	chr8	123429497	123429697	-	1	NA	NA	NA	-13359	NM_001253784	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.035000	0.532338	66(CCTTATAGAGGA,+,0.00)
mm_150786.1	chr19	44297994	44298194	+	1	NA	NA	NA	4418	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.030000	0.547264	
mm_114221.1	chr13	56438256	56438456	+	1	NA	NA	NA	1	NM_177809	328258	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	0.085000	0.626866	-83(GTGCCTTTAAGG,-,0.00),-81(GCCTTTAAGGTC,+,0.00)
mm_135509.1	chr16	48410035	48410235	-	1	NA	NA	NA	2281	NR_015373	433023	Mm.483302	NR_015373	ENSMUSG00000110573	Gm5485	EG433023	predicted gene 5485	ncRNA	0.005000	0.467662	
mm_31964.1	chr4	86930638	86930838	+	1	NA	NA	NA	56324	NM_139306	230379	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0.030000	0.542289	
mm_117956.1	chr13	99444459	99444659	-	1	NA	NA	NA	-31733	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.547264	
mm_113030.1	chr13	23493738	23493938	+	1	NA	NA	NA	-4981	NM_001289614	238555	Mm.129668	NM_175938	ENSMUSG00000053216	Btn2a2	Btn2|D030063K05	butyrophilin, subfamily 2, member A2	protein-coding	0.005000	0.457711	
mm_51920.1	chr6	91252475	91252675	+	1	NA	NA	NA	39811	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.010000	0.547264	
mm_28491.1	chr3	92484244	92484444	-	1	NA	NA	NA	1537	NM_009264	20753	Mm.331191	NM_009264	ENSMUSG00000050359	Sprr1a	AI528815|SPR1a|mSPRR1A	small proline-rich protein 1A	protein-coding	0.010000	0.611940	
mm_79057.1	chr9	46229992	46230192	+	1	NA	NA	NA	1462	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.085000	0.626866	
mm_92412.1	chr10	76723389	76723589	-	1	NA	NA	NA	2555	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.080000	0.606965	
mm_156297.1	chrX	136837508	136837708	+	1	NA	NA	NA	14862	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.383085	
mm_148968.1	chr19	7536780	7536980	+	1	NA	NA	NA	-20579	NM_139269	225845	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.005000	0.407960	
mm_39773.1	chr5	30017830	30018030	+	1	NA	NA	NA	4816	NM_031168	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.000000	0.328358	
mm_146716.1	chr18	15063489	15063689	-	1	NA	NA	NA	-7	NM_001142731	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.090000	0.626866	-95(TCCTTTAAGAGC,-,0.00),-94(CCTTTAAGAGCC,+,0.00)
mm_12231.1	chr2	68568467	68568667	+	1	NA	NA	NA	-13846	NM_177651	227998	Mm.67562	NM_177651	ENSMUSG00000053896	4933409G03Rik	-	RIKEN cDNA 4933409G03 gene	protein-coding	0.045000	0.552239	
mm_103308.1	chr11	72796662	72796862	-	1	NA	NA	NA	536	NM_001045536	195018	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	0.065000	0.577114	-98(CTCTAGTAAAGG,-,0.00)
mm_76063.1	chr8	78147286	78147486	-	1	NA	NA	NA	-65956	NM_183096	73301	Mm.61243	NM_183096	ENSMUSG00000037101	Ttc29	1700031F13Rik	tetratricopeptide repeat domain 29	protein-coding	0.005000	0.522388	-12(CCTTTAAGACAC,+,0.00)
mm_10814.1	chr2	24350253	24350453	+	1	NA	NA	NA	4982	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.000000	0.368159	
mm_14406.1	chr2	130274330	130274530	+	1	NA	NA	NA	18	NM_024193	67134	Mm.29363	NM_024193	ENSMUSG00000027405	Nop56	2310044F10Rik|Nol5a	NOP56 ribonucleoprotein	protein-coding	0.095000	0.636816	
mm_2769.1	chr1	130717227	130717427	+	1	NA	NA	NA	0	NM_178691	226418	Mm.106553	NM_178691	ENSMUSG00000046404	Yod1	6330564D18Rik|9930028C20Rik|Hshin7	YOD1 deubiquitinase	protein-coding	0.100000	0.661692	-33(GAGCATAAATGC,-,0.00),57(CACTTTAAGAGC,-,0.00),58(ACTTTAAGAGCC,+,0.00)
mm_158071.1	chrX	101264561	101264761	-	1	NA	NA	NA	-669	NM_001317221	245536	Mm.212463	NM_001033362	ENSMUSG00000090141	Gm614	-	predicted gene 614	protein-coding	0.005000	0.527363	
mm_18458.1	chr2	61747449	61747649	-	1	NA	NA	NA	35855	NM_021526	59029	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0.000000	0.417910	
mm_88492.1	chr10	77814522	77814722	+	1	NA	NA	NA	-60	NM_001205009	100040299	Mm.486155	NM_001205009		Gm2696	-	predicted gene 2696	protein-coding	0.015000	0.502488	
mm_20287.1	chr2	126925710	126925910	-	1	NA	NA	NA	7425	NM_023220	66552	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	0.005000	0.388060	-77(CCCTTTAGACTC,+,0.00),80(CTTTTTATGGCT,+,0.00)
mm_153544.1	chr19	42059357	42059557	-	1	NA	NA	NA	7229	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	0.020000	0.373134	
mm_52137.1	chr6	97956936	97957136	+	1	NA	NA	NA	27219	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.015000	0.462687	
mm_48775.1	chr5	148535101	148535301	-	1	NA	NA	NA	17587	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.005000	0.363184	
mm_55040.1	chr6	48987840	48988040	-	1	NA	NA	NA	1079	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.010000	0.537313	
mm_119063.1	chr14	30743706	30743906	+	1	NA	NA	NA	28191	NM_001166532	54650	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.000000	0.363184	63(TCTTATAAAGGC,+,0.00)
mm_108149.1	chr12	76306968	76307168	+	1	NA	NA	NA	-17823	NM_001101471	238276	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.010000	0.507463	
mm_2291.1	chr1	91442791	91442991	+	1	NA	NA	NA	16437	NM_011066	18627	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.020000	0.507463	
mm_3949.1	chr1	164048115	164048315	+	1	NA	NA	NA	-19	NM_011345	20339	Mm.5245	NM_011345	ENSMUSG00000026582	Sele	CD62E|E-selectin|ELAM-1|Elam|LECAM2	selectin, endothelial cell	protein-coding	0.020000	0.472637	-35(TCCCCTATAAAG,-,0.00),-33(CCCTATAAAGAG,+,0.00),-33(CCCTATAAAGAG,-,0.00)
mm_40763.1	chr5	66976925	66977125	+	1	NA	NA	NA	8609	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.020000	0.432836	
mm_13703.1	chr2	117139319	117139519	+	1	NA	NA	NA	18348	NM_033524	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.005000	0.328358	
mm_152271.1	chr19	8819088	8819288	-	1	NA	NA	NA	106	NM_027412	70387	Mm.261082	NM_027412	ENSMUSG00000071660	Ttc9c	2210019E14Rik|6330408J23Rik	tetratricopeptide repeat domain 9C	protein-coding	0.030000	0.512438	
mm_167348.1	chr8	82773983	82774183	-	1	NA	NA	NA	43	NM_145600	30932	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	0.115000	0.681592	
mm_91506.1	chr10	37136537	37136737	-	1	NA	NA	NA	2289	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.120000	0.671642	
mm_62962.1	chr7	119760885	119761085	+	1	NA	NA	NA	62	NM_212442	20216	Mm.334199	NM_016870	ENSMUSG00000030935	Acsm3	Sa|Sah	acyl-CoA synthetase medium-chain family member 3	protein-coding	0.020000	0.472637	
mm_80698.1	chr9	92193055	92193255	+	1	NA	NA	NA	219	NM_001195693	100504689	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	0.025000	0.487562	
mm_33556.1	chr4	130944284	130944484	+	1	NA	NA	NA	-1	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.015000	0.616915	
mm_124282.1	chr14	103048331	103048531	-	1	NA	NA	NA	1419	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.010000	0.383085	
mm_4796.1	chr1	184735308	184735508	+	1	NA	NA	NA	-2915	NM_008250	15284	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.045000	0.477612	
mm_84374.1	chr9	65010669	65010869	-	1	NA	NA	NA	10948	NM_021345	57874	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	0.025000	0.522388	-11(CCTCATATAGCT,+,0.00)
mm_41734.1	chr5	102695277	102695477	+	1	NA	NA	NA	-73433	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.010000	0.427861	
mm_88160.1	chr10	69706105	69706305	+	1	NA	NA	NA	172497	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.035000	0.467662	
mm_61363.1	chr7	68979347	68979547	+	1	NA	NA	NA	-230209	NM_025549	66412	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.035000	0.407960	
mm_110708.1	chr12	69344072	69344272	-	1	NA	NA	NA	13004	NM_025441	66244	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0.010000	0.353234	
mm_148266.1	chr18	80987300	80987500	-	1	NA	NA	NA	-822	NM_178280	20689	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	sal-like 3 (Drosophila)	protein-coding	0.110000	0.731343	
mm_125779.1	chr15	74714740	74714940	+	1	NA	NA	NA	1	NM_028216	72373	Mm.46395	NM_028216	ENSMUSG00000022598	Psca	2210408B04Rik	prostate stem cell antigen	protein-coding	0.015000	0.572139	-33(GACCATATAAAG,-,0.00),-31(CCATATAAAGCC,+,0.00)
mm_128789.1	chr15	66810042	66810242	-	1	NA	NA	NA	21687	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.000000	0.492537	
mm_83514.1	chr9	46012552	46012752	-	1	NA	NA	NA	-168	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.135000	0.716418	
mm_34533.1	chr4	149446600	149446800	+	1	NA	NA	NA	8268	NM_022020	63954	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	0.000000	0.407960	
mm_30197.1	chr3	144712626	144712826	-	1	NA	NA	NA	7609	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.015000	0.368159	
mm_59581.1	chr7	28129345	28129545	+	1	NA	NA	NA	-21	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.567164	
mm_74319.1	chr8	126848837	126849037	+	1	NA	NA	NA	96984	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.040000	0.522388	
mm_86208.1	chr9	119984527	119984727	-	1	NA	NA	NA	31	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.050000	0.611940	
mm_65215.1	chr7	19698134	19698334	-	1	NA	NA	NA	164	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.030000	0.567164	
mm_111634.1	chr12	102561869	102562069	-	1	NA	NA	NA	7028	NM_007693	12652	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	0.010000	0.582090	
mm_128471.1	chr15	50857641	50857841	-	1	NA	NA	NA	31308	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.298507	
mm_164163.1	chr15	73487727	73487927	+	1	NA	NA	NA	-24733	NM_001081066	105841	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.010000	0.427861	
mm_27433.1	chr3	51560705	51560905	-	1	NA	NA	NA	18	NM_080793	73251	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	0.085000	0.681592	
mm_103244.1	chr11	70755065	70755265	-	1	NA	NA	NA	-9282	NM_177565	193043	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0.015000	0.482587	
mm_112295.1	chr12	114583919	114584119	-	1	NA	NA	NA	-70325	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.432836	
mm_64678.1	chr7	4502120	4502320	-	1	NA	NA	NA	-540	NM_029834	232807	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.030000	0.517413	
mm_149138.1	chr19	9003031	9003231	+	1	NA	NA	NA	13847	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.000000	0.462687	
mm_158760.1	chrX	166483815	166484015	-	1	NA	NA	NA	-4048	NM_019773	56382	Mm.25306	NM_019773	ENSMUSG00000079316	Rab9	2410064E05Rik|AI195561|Rab9a|Sid6061p	RAB9, member RAS oncogene family	protein-coding	0.040000	0.666667	-74(CCCCTTAAGGGC,+,0.00),-73(CCCTTAAGGGCC,+,0.00)
mm_81891.1	chr9	119408693	119408893	+	1	NA	NA	NA	6615	NM_007397	11481	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	0.015000	0.522388	
mm_88165.1	chr10	69706423	69706623	+	1	NA	NA	NA	172815	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.010000	0.587065	-99(CCTTTACAAGAG,+,0.00)
mm_49887.1	chr6	38702734	38702934	+	1	NA	NA	NA	39765	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.025000	0.532338	
mm_148087.1	chr18	73703673	73703873	-	1	NA	NA	NA	-32	NM_008540	17128	Mm.100399	NM_008540	ENSMUSG00000024515	Smad4	AW743858|D18Wsu70e|DPC4|Madh4	SMAD family member 4	protein-coding	0.140000	0.706468	
mm_49430.1	chr6	29272524	29272724	+	1	NA	NA	NA	-2	NM_023516	69573	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.095000	0.661692	
mm_108199.1	chr12	76886964	76887164	+	1	NA	NA	NA	49597	NM_145927	110606	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	0.015000	0.527363	
mm_163137.1	chr11	79244360	79244560	-	1	NA	NA	NA	-1436	NM_001042565	78889	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.025000	0.427861	
mm_100056.1	chr11	115215664	115215864	+	1	NA	NA	NA	28277	NM_001033393	320534	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	0.015000	0.497512	
mm_73554.1	chr8	108958854	108959054	+	1	NA	NA	NA	22094	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.015000	0.373134	
mm_68795.1	chr7	124186499	124186699	-	1	NA	NA	NA	203418	NM_001252072	628779	Mm.40210	NM_001252072	ENSMUSG00000078591	Hs3st4	EG628779|Gm6915	heparan sulfate (glucosamine) 3-O-sulfotransferase 4	protein-coding	0.010000	0.457711	
mm_42366.1	chr5	114922453	114922653	+	1	NA	NA	NA	-687	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.035000	0.412935	
mm_62266.1	chr7	99535171	99535371	+	1	NA	NA	NA	-215	NM_178220	109689	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	0.055000	0.577114	
mm_101953.1	chr11	50295849	50296049	-	1	NA	NA	NA	-3613	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.000000	0.263682	
mm_79460.1	chr9	56418553	56418753	+	1	NA	NA	NA	-193	NM_025812	66867	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0.050000	0.422886	
mm_135351.1	chr16	43664917	43665117	-	1	NA	NA	NA	-833	NM_001146325	100043314	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	ENSMUSG00000071552|Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0.000000	0.527363	
mm_169309.1	chr14	104715837	104716037	-	1	NA	NA	NA	76790	NR_015593	320249	Mm.320725	NR_015593		D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0.080000	0.547264	27(AACTTTAAATGG,-,0.00)
mm_87805.1	chr10	60300689	60300889	+	1	NA	NA	NA	16328	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.542289	4(CTGCCTATAAGC,-,0.00)
mm_80441.1	chr9	77957056	77957256	+	1	NA	NA	NA	39791	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.025000	0.442786	-25(TCTTTAATAGGT,+,0.00)
mm_141269.1	chr17	27728980	27729180	-	1	NA	NA	NA	-129	NM_013891	30051	Mm.26768	NM_013891	ENSMUSG00000024215	Spdef	PDEF|Pse	SAM pointed domain containing ets transcription factor	protein-coding	0.025000	0.532338	-33(TCATTTAAAGGA,+,0.00)
mm_115219.1	chr13	109632675	109632875	+	1	NA	NA	NA	-271034	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.010000	0.537313	
mm_158040.1	chrX	98890129	98890329	-	1	NA	NA	NA	796	NM_052976	94190	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	0.040000	0.527363	
mm_82612.1	chr9	21635752	21635952	-	1	NA	NA	NA	19683	NM_001174078	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.035000	0.651741	
mm_101753.1	chr11	43384907	43385107	-	1	NA	NA	NA	-10546	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.020000	0.532338	
mm_29199.1	chr3	106766390	106766590	-	1	NA	NA	NA	23659	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.000000	0.348259	
mm_116671.1	chr13	49210198	49210398	-	1	NA	NA	NA	5728	NM_026738	68480	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.010000	0.442786	
mm_31638.1	chr4	59578923	59579123	+	1	NA	NA	NA	-2540	NM_001301367	72479	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0.000000	0.507463	-34(CACTATAAGAGG,-,0.00)
mm_57061.1	chr6	122498663	122498863	-	1	NA	NA	NA	-12458	NM_027664	108653	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	0.010000	0.492537	
mm_139968.1	chr17	71684539	71684739	+	1	NA	NA	NA	11378	NM_177087	320159	Mm.187372	NM_177087	ENSMUSG00000045761	Fam179a	4632412N22Rik	family with sequence similarity 179, member A	protein-coding	0.010000	0.532338	
mm_88855.1	chr10	80930659	80930859	+	1	NA	NA	NA	668	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.035000	0.502488	
mm_76729.1	chr8	95020577	95020777	-	1	NA	NA	NA	2985	NM_173036	54672	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.035000	0.626866	
mm_120766.1	chr14	73384916	73385116	+	1	NA	NA	NA	255	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.110000	0.696517	
mm_147710.1	chr18	60812237	60812437	-	1	NA	NA	NA	261	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.030000	0.557214	
mm_109487.1	chr12	111442367	111442567	+	1	NA	NA	NA	-194	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.080000	0.641791	
mm_49376.1	chr6	24543288	24543488	+	1	NA	NA	NA	15244	NM_080847	78910	Mm.160150	NM_080847	ENSMUSG00000029685	Asb15	4930400E23Rik|Asb-15	ankyrin repeat and SOCS box-containing 15	protein-coding	0.020000	0.427861	
mm_153903.1	chr19	47090603	47090803	-	1	NA	NA	NA	-63	NM_011053	18572	Mm.41166	NM_011053	ENSMUSG00000025047	Pdcd11	1110021I22Rik|ALG-4|Pdcd7|mKIAA0185	programmed cell death 11	protein-coding	0.130000	0.641791	
mm_120154.1	chr14	60702823	60703023	+	1	NA	NA	NA	-29981	NM_001310594	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.015000	0.522388	
mm_103726.1	chr11	79530482	79530682	-	1	NA	NA	NA	27	NM_146023	101488212	Mm.439665	NM_146023	ENSMUSG00000070354	Gm21975	Evi2a-evi2b	predicted gene 21975	protein-coding	0.015000	0.502488	
mm_133422.1	chr16	87303954	87304154	+	1	NA	NA	NA	-50131	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0.000000	0.437811	-31(GAGTATAAATAG,-,0.00)
mm_147344.1	chr18	43322176	43322376	-	1	NA	NA	NA	50996	NM_001136086	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.010000	0.407960	-11(ACTTTTATACGC,+,0.00)
mm_56971.1	chr6	120188375	120188575	-	1	NA	NA	NA	-5348	NM_001347432	29862	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.040000	0.597015	
mm_36608.1	chr4	89126449	89126649	-	1	NA	NA	NA	-10821	NM_024433	66902	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	0.000000	0.333333	-8(ACTTTTAGAGCA,+,0.00)
mm_22298.1	chr2	180276762	180276962	-	1	NA	NA	NA	-3397	NM_145851	252966	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0.020000	0.512438	
mm_43921.1	chr5	144768418	144768618	+	1	NA	NA	NA	-274	NM_001081362	100683	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0.125000	0.691542	
mm_20450.1	chr2	129364746	129364946	-	1	NA	NA	NA	-5056	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.010000	0.447761	
mm_59382.1	chr7	26174116	26174316	+	1	NA	NA	NA	807	NM_010000	13094	Mm.14413	NM_010000	ENSMUSG00000040660	Cyp2b9	Cyp2b	cytochrome P450, family 2, subfamily b, polypeptide 9	protein-coding	0.000000	0.288557	
mm_84607.1	chr9	70142078	70142278	-	1	NA	NA	NA	-621	NM_029784	76886	Mm.44355	NM_029784	ENSMUSG00000032224	Fam81a	6430514L14Rik	family with sequence similarity 81, member A	protein-coding	0.020000	0.537313	
mm_101982.1	chr11	50431016	50431216	-	1	NA	NA	NA	-5	NM_172557	216724	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	0.115000	0.681592	
mm_51727.1	chr6	86955127	86955327	+	1	NA	NA	NA	-54609	NM_001170591	56748	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	0.015000	0.562189	
mm_46274.1	chr5	100038062	100038262	-	1	NA	NA	NA	1060	NM_016690	50926	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	0.030000	0.412935	
mm_138388.1	chr17	35050130	35050330	+	1	NA	NA	NA	-13	NM_033444	114584	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.055000	0.676617	
mm_62344.1	chr7	100498147	100498347	+	1	NA	NA	NA	4889	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.030000	0.582090	
mm_166852.1	chr7	19696809	19697009	+	1	NA	NA	NA	1489	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.090000	0.641791	
mm_71603.1	chr8	55940331	55940531	+	1	NA	NA	NA	-394	NM_080438	110304	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	0.040000	0.572139	
mm_148634.1	chr19	5463983	5464183	+	1	NA	NA	NA	3476	NM_021438	58249	Mm.329656	NM_021438	ENSMUSG00000024911	Fibp	2010004G08Rik|2010005N21Rik|3010027N18Rik	fibroblast growth factor (acidic) intracellular binding protein	protein-coding	0.030000	0.592040	
mm_159820.1	chr5	122753725	122753925	-	1	NA	NA	NA	25585	NM_001199676	207565	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.040000	0.621891	
mm_90847.1	chr10	8762176	8762376	-	1	NA	NA	NA	123794	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.040000	0.552239	
mm_133228.1	chr16	76548664	76548864	+	1	NA	NA	NA	-175715	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.015000	0.482587	
mm_62516.1	chr7	102223426	102223626	+	1	NA	NA	NA	498	NR_111937	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.010000	0.363184	
mm_96172.1	chr11	61488571	61488771	+	1	NA	NA	NA	3227	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.010000	0.502488	
mm_139716.1	chr17	57466150	57466350	+	1	NA	NA	NA	79064	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.000000	0.477612	
mm_40114.1	chr5	34917432	34917632	+	1	NA	NA	NA	1617	NM_001310550	403174	Mm.291225	NM_207277	ENSMUSG00000051246	Msantd1	A930005I04Rik|Gm144	Myb/SANT-like DNA-binding domain containing 1	protein-coding	0.040000	0.522388	-42(CCGTTTAAAAGC,-,0.00)
mm_11838.1	chr2	45111105	45111305	+	1	NA	NA	NA	67	NR_110572	433424	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|OTTMUSG00000012358|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0.045000	0.537313	-36(GGCTATAAAAGA,-,0.00)
mm_131407.1	chr16	14441203	14441403	+	1	NA	NA	NA	79745	NM_008576	17250	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.005000	0.472637	
mm_135745.1	chr16	55895283	55895483	-	1	NA	NA	NA	-104	NM_001134457	385658	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0.130000	0.721393	
mm_109687.1	chr12	113142694	113142894	+	1	NA	NA	NA	2189	NM_001347443	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.030000	0.621891	
mm_165334.1	chr2	114050379	114050579	-	1	NA	NA	NA	2396	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.020000	0.527363	
mm_16845.1	chr2	11513121	11513321	-	1	NA	NA	NA	-11131	NM_001177757	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.025000	0.567164	
mm_151675.1	chr19	4201300	4201500	-	1	NA	NA	NA	203	NM_011237	19367	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0.050000	0.611940	
mm_1545.1	chr1	72852142	72852342	+	1	NA	NA	NA	22623	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.025000	0.562189	
mm_17379.1	chr2	27019907	27020107	-	1	NA	NA	NA	7991	NM_172659	227659	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.010000	0.542289	
mm_14306.1	chr2	129122967	129123167	+	1	NA	NA	NA	-6633	NM_025395	66170	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	0.020000	0.348259	
mm_99118.1	chr11	100141446	100141646	+	1	NA	NA	NA	2153	NM_001313963	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.040000	0.572139	
mm_84898.1	chr9	79830873	79831073	-	1	NA	NA	NA	37332	NR_040734	74633	Mm.262175	NR_040734	ENSMUSG00000086918	4930429F24Rik	-	RIKEN cDNA 4930429F24 gene	ncRNA	0.005000	0.477612	
mm_54813.1	chr6	42340136	42340336	-	1	NA	NA	NA	-9592	NM_011777	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.015000	0.477612	
mm_87848.1	chr10	60932252	60932452	+	1	NA	NA	NA	5780	NR_033616	73616	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	0.020000	0.606965	-94(CCTCTTAGGGGG,+,0.00)
mm_19706.1	chr2	103796857	103797057	-	1	NA	NA	NA	121	NM_001111290	53872	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	0.120000	0.671642	
mm_112621.1	chr13	15606275	15606475	+	1	NA	NA	NA	142652	NM_008130	14634	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0.005000	0.402985	
mm_73855.1	chr8	118283495	118283695	+	1	NA	NA	NA	-16	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.045000	0.532338	
mm_69942.1	chr7	142144507	142144707	-	1	NA	NA	NA	-8524	NM_001347556	105243089		NM_001347556	ENSMUSG00000110091	Gm39115	-	predicted gene, 39115	protein-coding	0.000000	0.557214	
mm_96831.1	chr11	70000552	70000752	+	1	NA	NA	NA	26	NM_007888	13543	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0.095000	0.666667	
mm_115916.1	chr13	23530830	23531030	-	1	NA	NA	NA	-114	NM_153173	69386	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.040000	0.487562	
mm_85468.1	chr9	105560709	105560909	-	1	NA	NA	NA	-39552	NM_001253831	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.045000	0.507463	
mm_23947.1	chr3	84817209	84817409	+	1	NA	NA	NA	1732	NM_001177773	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.000000	0.303483	
mm_56865.1	chr6	118419273	118419473	-	1	NA	NA	NA	44	NM_194339	213895	Mm.25269	NM_194339	ENSMUSG00000030138	Bms1	AA408648|AU020092|AU043373|BB007109|BC030906|Bms1l|mKIAA0187	BMS1, ribosome biogenesis factor	protein-coding	0.110000	0.651741	
mm_33551.1	chr4	130934837	130935037	+	1	NA	NA	NA	-9448	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.020000	0.482587	75(GCTTAAATAGCG,+,0.00)
mm_8382.1	chr1	151251910	151252110	-	1	NA	NA	NA	-92488	NM_001039512	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.020000	0.497512	-33(GCATATATACCC,+,0.00)
mm_67204.1	chr7	74302628	74302828	-	1	NA	NA	NA	252052	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.010000	0.437811	
mm_80275.1	chr9	72985505	72985705	+	1	NA	NA	NA	101	NM_028181	72278	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	0.115000	0.676617	
mm_109505.1	chr12	111452128	111452328	+	1	NA	NA	NA	9567	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.000000	0.452736	
mm_32730.1	chr4	116557690	116557890	+	1	NA	NA	NA	63	NM_029868	77110	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	0.080000	0.646766	
mm_79189.1	chr9	48450164	48450364	+	1	NA	NA	NA	-4080	NR_026561	667933	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.040000	0.507463	
mm_99600.1	chr11	104550039	104550239	+	1	NA	NA	NA	481	NM_001285990	217232	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	0.100000	0.696517	
mm_33236.1	chr4	127021885	127022085	+	1	NA	NA	NA	684	NM_023603	71514	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|OTTMUSG00000009329|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.110000	0.776119	
mm_41375.1	chr5	90719039	90719239	+	1	NA	NA	NA	-40159	NM_009141	20311	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0.000000	0.447761	
mm_87061.1	chr10	28843961	28844161	+	1	NA	NA	NA	79446	NR_033601	114676	Mm.390292	NR_033601		4930519F09Rik	-	pyruvate dehydrogenase E1 alpha 1 pseudogene	pseudo	0.005000	0.412935	
mm_88376.1	chr10	76293056	76293256	+	1	NA	NA	NA	39320	NM_009115	20203	Mm.235998	NM_009115	ENSMUSG00000033208	S100b	AI850290|Bpb	S100 protein, beta polypeptide, neural	protein-coding	0.020000	0.487562	
mm_148619.1	chr19	5406772	5406972	+	1	NA	NA	NA	57	NR_027938	74931	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	0.025000	0.532338	
mm_80609.1	chr9	87021949	87022149	+	1	NA	NA	NA	20	NM_024195	266690	Mm.30166	NM_024195	ENSMUSG00000032872	Cyb5r4	2810034J18Rik|B5+B5R|C79736|Cb5cb5r|Ncb5or|b5/b5r|b5b5r	cytochrome b5 reductase 4	protein-coding	0.105000	0.731343	
mm_132431.1	chr16	35808976	35809176	+	1	NA	NA	NA	38690	NM_175111	66667	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	0.010000	0.527363	
mm_32303.1	chr4	103133432	103133632	+	1	NA	NA	NA	14142	NM_001039081	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.015000	0.328358	36(GCTTATATAGAA,+,0.00)
mm_30237.1	chr3	146153798	146153998	-	1	NA	NA	NA	3724	NM_001005846	68279	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.020000	0.587065	
mm_18980.1	chr2	76849542	76849742	-	1	NA	NA	NA	132905	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.010000	0.338308	-94(CTTTTTAAAAAG,+,0.00),-94(CTTTTTAAAAAG,-,0.00)
mm_133879.1	chr16	96493722	96493922	+	1	NA	NA	NA	26216	NM_008791	18546	Mm.5023	NM_008791	ENSMUSG00000090223	Pcp4	P16Rimb19|Pcp-4|Pep19	Purkinje cell protein 4	protein-coding	0.025000	0.383085	-14(GTTTATAGAGAC,+,0.00)
mm_3100.1	chr1	134431910	134432110	+	1	NA	NA	NA	16346	NM_001306069	72674	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.010000	0.383085	
mm_168952.1	chr12	7825470	7825670	-	1	NA	NA	NA	-152107	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.000000	0.402985	-98(CTTCTAATAGGC,+,0.00)
mm_19892.1	chr2	114051205	114051405	-	1	NA	NA	NA	1570	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.015000	0.497512	
mm_159145.1	chr2	87136013	87136213	-	1	NA	NA	NA	206	NM_146769	258765	Mm.223196	NM_146769	ENSMUSG00000075159	Olfr1110	MOR172-4	olfactory receptor 1110	protein-coding	0.000000	0.378109	
mm_61141.1	chr7	57419573	57419773	+	1	NA	NA	NA	32401	NR_033504	791383	Mm.403104	NR_033504	ENSMUSG00000055048	Gm9962	ENSMUSG00000055048	predicted gene 9962	ncRNA	0.005000	0.527363	
mm_52858.1	chr6	122282914	122283114	+	1	NA	NA	NA	-181	NM_016970	50928	Mm.20434	NM_016970	ENSMUSG00000030114	Klrg1	2F1-Ag|MAFA|MAFA-L	killer cell lectin-like receptor subfamily G, member 1	protein-coding	0.030000	0.472637	
mm_140205.1	chr17	83775412	83775612	+	1	NA	NA	NA	69349	NM_001171052	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.035000	0.527363	
mm_81136.1	chr9	106561650	106561850	+	1	NA	NA	NA	-125	NM_026645	68265	Mm.141451	NM_026645	ENSMUSG00000023577	Iqcf3	1700012F17Rik|AV040440	IQ motif containing F3	protein-coding	0.020000	0.527363	
mm_110476.1	chr12	51847748	51847948	-	1	NA	NA	NA	-18312	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.015000	0.492537	-35(GCCTATATAAAT,-,0.00)
mm_75989.1	chr8	72386870	72387070	-	1	NA	NA	NA	34504	NM_001122832	13859	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	0.035000	0.636816	-46(CCCTCTAAGAGG,-,0.00)
mm_71031.1	chr8	33599797	33599997	+	1	NA	NA	NA	276	NM_017374	19053	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	0.140000	0.761194	
mm_26476.1	chr3	144577504	144577704	+	1	NA	NA	NA	7177	NM_053102	93684	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.015000	0.472637	
mm_154497.1	chrM	11378	11578	-	1	NA	NA	NA	NA	NA									0.015000	0.348259	
mm_19406.1	chr2	91649691	91649891	-	1	NA	NA	NA	0	NM_001033451	381410	Mm.330401	NM_001033451	ENSMUSG00000075040	Zfp408	Gm1011	zinc finger protein 408	protein-coding	0.045000	0.522388	
mm_127960.1	chr15	11906069	11906269	-	1	NA	NA	NA	-356	NR_131059	381002	Mm.441967	NR_131059		Gm5144	-	predicted gene 5144	ncRNA	0.085000	0.641791	28(CGCTATTTAAAC,-,0.00),30(CTATTTAAACCC,+,0.00)
mm_80520.1	chr9	80066972	80067172	+	1	NA	NA	NA	169	NM_146003	215351	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.140000	0.731343	
mm_29166.1	chr3	106485785	106485985	-	1	NA	NA	NA	28	NR_033207	69206	Mm.14816	NM_001033146	ENSMUSG00000091575	2010016I18Rik	-	RIKEN cDNA 2010016I18 gene	ncRNA	0.010000	0.512438	
mm_171218.1	chr3	59767114	59767314	+	1	NA	NA	NA	37428	NM_001101531	433597	Mm.297801	NM_001101531	ENSMUSG00000090527	Gm5538	-	predicted gene 5538	protein-coding	0.035000	0.472637	
mm_86446.1	chr10	4266232	4266432	+	1	NA	NA	NA	3	NM_031185	83397	Mm.27481	NM_031185	ENSMUSG00000038587	Akap12	AI317366|SSeCKS|Srcs5|Tsga12	A kinase (PRKA) anchor protein (gravin) 12	protein-coding	0.040000	0.542289	-4(TCTTTTAAGGAG,+,0.00)
mm_95412.1	chr11	50025189	50025389	+	1	NA	NA	NA	-42	NM_021540	59044	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.230000	0.845771	
mm_78535.1	chr9	35211139	35211339	+	1	NA	NA	NA	36	NM_026130	67398	Mm.284688	NM_026130	ENSMUSG00000032042	Srpr	1300011P19Rik|D11Mgi27|Srpra	signal recognition particle receptor ('docking protein')	protein-coding	0.115000	0.671642	
mm_53425.1	chr6	134035893	134036093	+	1	NA	NA	NA	293	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.105000	0.641791	
mm_63530.1	chr7	127968007	127968207	+	1	NA	NA	NA	628	NM_139149	233908	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0.055000	0.482587	
mm_17843.1	chr2	34371916	34372116	-	1	NA	NA	NA	29	NM_001290576	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.190000	0.850746	
mm_86496.1	chr10	5664097	5664297	+	1	NA	NA	NA	24979	NM_001313969	22353	Mm.98916	NM_011702	ENSMUSG00000019772	Vip	-	vasoactive intestinal polypeptide	protein-coding	0.005000	0.328358	
mm_96456.1	chr11	67586497	67586697	+	1	NA	NA	NA	97	NM_001109657	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.015000	0.527363	
mm_95951.1	chr11	58390180	58390380	+	1	NA	NA	NA	9634	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.025000	0.532338	
mm_15408.1	chr2	156775086	156775286	+	1	NA	NA	NA	-278	NM_172118	98932	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0.035000	0.636816	
mm_164546.1	chr17	12165748	12165948	+	1	NA	NA	NA	46564	NM_026644	68262	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.015000	0.517413	
mm_115203.1	chr13	109116198	109116398	+	1	NA	NA	NA	-208446	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.035000	0.537313	
mm_108986.1	chr12	102757690	102757890	+	1	NA	NA	NA	20	NM_001142939	100859931	Mm.291222	NM_001142939	ENSMUSG00000041716	Gm20604	AK010878-Moap1	predicted gene 20604	protein-coding	0.120000	0.651741	
mm_89210.1	chr10	86703459	86703659	+	1	NA	NA	NA	1885	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.010000	0.348259	
mm_65692.1	chr7	28372504	28372704	-	1	NA	NA	NA	58	NM_138752	101497	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.090000	0.731343	
mm_95777.1	chr11	54909629	54909829	+	1	NA	NA	NA	6875	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.015000	0.567164	
mm_104234.1	chr11	88694835	88695035	-	1	NA	NA	NA	23294	NM_054043	76626	Mm.400451	NM_054043	ENSMUSG00000069769	Msi2	1700105C15Rik|AI451722|AI563628|AW489193|Msi2h	musashi RNA-binding protein 2	protein-coding	0.015000	0.412935	
mm_48210.1	chr5	137606812	137607012	-	1	NA	NA	NA	4492	NM_008788	18542	Mm.262345	NM_008788	ENSMUSG00000029718	Pcolce	Astt-2|Astt2|P14|PCPE-1	procollagen C-endopeptidase enhancer protein	protein-coding	0.025000	0.597015	
mm_131818.1	chr16	22920303	22920503	+	1	NA	NA	NA	181	NM_001083904	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.015000	0.487562	
mm_11519.1	chr2	32608611	32608811	+	1	NA	NA	NA	1726	NR_110347	50935	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.045000	0.592040	
mm_171882.1	chr5	3293874	3294074	+	1	NA	NA	NA	-49919	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.010000	0.447761	
mm_16326.1	chr2	174308384	174308584	+	1	NA	NA	NA	10625	NM_001310085	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.000000	0.412935	
mm_95097.1	chr11	34046840	34047040	+	1	NA	NA	NA	-261	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.000000	0.477612	
mm_16867.1	chr2	12111022	12111222	-	1	NA	NA	NA	-190124	NR_040353	338535	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.020000	0.398010	
mm_113752.1	chr13	44731263	44731463	+	1	NA	NA	NA	92	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.050000	0.517413	
mm_106254.1	chr11	117828180	117828380	-	1	NA	NA	NA	-2266	NM_009387	21877	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.020000	0.592040	
mm_40973.1	chr5	77001653	77001853	+	1	NA	NA	NA	-2302	NM_206935	384185	Mm.451858	NM_206935	ENSMUSG00000063820	Arl9	1700110A09Rik	ADP-ribosylation factor-like 9	protein-coding	0.000000	0.437811	
mm_29876.1	chr3	130947227	130947427	-	1	NA	NA	NA	-162970	NM_010703	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.015000	0.467662	
mm_36438.1	chr4	82296159	82296359	-	1	NA	NA	NA	209520	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.020000	0.373134	
mm_28865.1	chr3	97546198	97546398	-	1	NA	NA	NA	63892	NM_026539	68058	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	0.015000	0.567164	
mm_19222.1	chr2	84650632	84650832	-	1	NA	NA	NA	8	NM_001085449	12388	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.005000	0.532338	
mm_98503.1	chr11	94951960	94952160	+	1	NA	NA	NA	-15533	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.005000	0.532338	
mm_80205.1	chr9	72438456	72438656	+	1	NA	NA	NA	27	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.075000	0.606965	
mm_143014.1	chr17	56462278	56462478	-	1	NA	NA	NA	-157	NM_001252456	19280	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.060000	0.621891	68(GCTTTTAGACAG,+,0.00)
mm_137807.1	chr17	30004400	30004600	+	1	NA	NA	NA	-587	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.050000	0.621891	
mm_89525.1	chr10	94435396	94435596	+	1	NA	NA	NA	-79361	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.015000	0.517413	13(TCCTTTATACCC,+,0.00)
mm_16904.1	chr2	13491769	13491969	-	1	NA	NA	NA	7	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.020000	0.482587	
mm_65133.1	chr7	19508285	19508485	-	1	NA	NA	NA	-54	NM_177692	232946	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.085000	0.532338	
mm_141742.1	chr17	34122541	34122741	-	1	NA	NA	NA	-34	NM_001204973	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.105000	0.716418	
mm_4121.1	chr1	169692476	169692676	+	1	NA	NA	NA	37075	NM_009063	19737	Mm.20954	NM_009063	ENSMUSG00000026678	Rgs5	1110070A02Rik	regulator of G-protein signaling 5	protein-coding	0.005000	0.338308	
mm_30541.1	chr4	3677990	3678190	+	1	NA	NA	NA	-31	NM_001111096	17096	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.060000	0.611940	
mm_109736.1	chr12	117153792	117153992	+	1	NA	NA	NA	-2623	NR_033538	100038689	Mm.445351	NR_033538	ENSMUSG00000099907	Gm10421	ENSMUSG00000072792	predicted gene 10421	ncRNA	0.180000	0.800995	
mm_172989.1	chrM	1091	1291	+	1	NA	NA	NA	NA	NA									0.010000	0.308458	
mm_25089.1	chr3	100825360	100825560	+	1	NA	NA	NA	1	NM_178594	242122	Mm.137467	NM_178594	ENSMUSG00000051076	Vtcn1	B7h4|B7s1|B7x|BC032925	V-set domain containing T cell activation inhibitor 1	protein-coding	0.015000	0.562189	-33(CACTATTTAAAG,-,0.00),-31(CTATTTAAAGAC,+,0.00)
mm_88637.1	chr10	79918405	79918605	+	1	NA	NA	NA	1534	NM_053244	114229	Mm.191035	NM_053244	ENSMUSG00000035773	Kiss1r	Gpr54|KiSS-1	KISS1 receptor	protein-coding	0.065000	0.676617	-33(GGGTATAAAAGT,-,0.00)
mm_44450.1	chr5	21701430	21701630	-	1	NA	NA	NA	-185	NM_178728	242864	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	0.125000	0.731343	
mm_120987.1	chr14	79128982	79129182	+	1	NA	NA	NA	118285	NM_001033215	105590	Mm.486536	NM_001033215	ENSMUSG00000071262	Zfp957	AU017455	zinc finger protein 957	protein-coding	0.000000	0.363184	-39(GTTTTTATGGGT,+,0.00)
mm_68497.1	chr7	111078030	111078230	-	1	NA	NA	NA	4900	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.005000	0.422886	
mm_33935.1	chr4	136909743	136909943	+	1	NA	NA	NA	-10999	NM_007572	12259	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	0.015000	0.572139	
mm_27615.1	chr3	59220076	59220276	-	1	NA	NA	NA	-9294	NM_028808	74191	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.005000	0.492537	
mm_100663.1	chr11	3291520	3291720	-	1	NA	NA	NA	1163	NM_019574	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.055000	0.577114	
mm_107640.1	chr12	52503836	52504036	+	1	NA	NA	NA	-12141	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0.210000	0.820896	
mm_71561.1	chr8	50823694	50823894	+	1	NA	NA	NA	455682	NR_046067	100039954	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.010000	0.353234	
mm_34138.1	chr4	139291473	139291673	+	1	NA	NA	NA	19127	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.015000	0.582090	
mm_112899.1	chr13	20896413	20896613	+	1	NA	NA	NA	102400	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.323383	
mm_146243.1	chr18	77281586	77281786	+	1	NA	NA	NA	-272	NM_172834	240411	Mm.380247	NM_172834	ENSMUSG00000032818	Loxhd1	1700096C21Rik|4932417K07|sba	lipoxygenase homology domains 1	protein-coding	0.035000	0.562189	
mm_120548.1	chr14	67716010	67716210	+	1	NA	NA	NA	12	NM_001285933	105440	Mm.6720	NM_134073	ENSMUSG00000034327	Kctd9	-	potassium channel tetramerisation domain containing 9	protein-coding	0.075000	0.686567	
mm_52431.1	chr6	113483450	113483650	+	1	NA	NA	NA	-19	NM_133930	171508	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811	cysteine-rich with EGF-like domains 1	protein-coding	0.030000	0.527363	
mm_35371.1	chr4	32986983	32987183	-	1	NA	NA	NA	4085	NM_027491	52187	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	0.005000	0.497512	40(CACTATAAAAAC,-,0.00)
mm_32799.1	chr4	117095937	117096137	+	1	NA	NA	NA	-19	NM_001312903	19207	Mm.287037	NM_008958	ENSMUSG00000028681	Ptch2	ptc2	patched 2	protein-coding	0.075000	0.631841	
mm_130876.1	chr15	102246135	102246335	-	1	NA	NA	NA	265	NM_001042727	19411	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.095000	0.701493	
mm_30876.1	chr4	32238841	32239041	+	1	NA	NA	NA	-178494	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.140000	0.800995	
mm_86854.1	chr10	21690268	21690468	+	1	NA	NA	NA	-477	NR_045843	432436	Mm.244553	NM_001004162		Gm5420	EG432436	predicted gene 5420	ncRNA	0.015000	0.462687	
mm_88371.1	chr10	76032529	76032729	+	1	NA	NA	NA	17	NM_177475	64453	Mm.80609	NM_177475	ENSMUSG00000049764	Zfp280b	D10Jhu82e|Suhw2	zinc finger protein 280B	protein-coding	0.135000	0.751244	
mm_78182.1	chr9	21220663	21220863	+	1	NA	NA	NA	5518	NR_106127	102465769		NR_106127	ENSMUSG00000098764	Mir7667	Gm27756|mmu-mir-7667	microRNA 7667	ncRNA	0.030000	0.487562	
mm_71313.1	chr8	43307134	43307334	+	1	NA	NA	NA	-225	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.025000	0.502488	
mm_130091.1	chr15	89410151	89410351	-	1	NA	NA	NA	12	NM_001162882	75459	Mm.45462	NM_001162880	ENSMUSG00000078938	Syce3	1700007E06Rik|TSEG-2|TSEG2	synaptonemal complex central element protein 3	protein-coding	0.100000	0.711443	
mm_109662.1	chr12	113022275	113022475	+	1	NA	NA	NA	7867	NM_001291444	217893	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.000000	0.422886	
mm_10946.1	chr2	25557749	25557949	+	1	NA	NA	NA	-51	NM_021519	59022	Mm.29945	NM_021519	ENSMUSG00000015092	Edf1	0610008L11Rik|AA409425	endothelial differentiation-related factor 1	protein-coding	0.150000	0.746269	
mm_108205.1	chr12	76909349	76909549	+	1	NA	NA	NA	52799	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.020000	0.522388	
mm_84232.1	chr9	62026711	62026911	-	1	NA	NA	NA	-21	NM_028748	74090	Mm.273267	NM_028748	ENSMUSG00000032278	Paqr5	0610010I15Rik|AV002411|BB115488|mPRg	progestin and adipoQ receptor family member V	protein-coding	0.090000	0.726368	
mm_156524.1	chrX	150594303	150594503	+	1	NA	NA	NA	4482	NM_008824	18639	Mm.249131	NM_008824	ENSMUSG00000025271	Pfkfb1	PFK/FBPase 1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	protein-coding	0.015000	0.542289	
mm_141708.1	chr17	34000158	34000358	-	1	NA	NA	NA	75	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.120000	0.656716	
mm_108797.1	chr12	91588410	91588610	+	1	NA	NA	NA	1139	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.060000	0.582090	-89(GGCCTGAAAAGC,-,0.00),-34(CTCTATATAAAC,-,0.00)
mm_48267.1	chr5	137956251	137956451	-	1	NA	NA	NA	6608	NM_080450	118446	Mm.332771	NM_080450	ENSMUSG00000056966	Gjc3	Cx29|Gje1	gap junction protein, gamma 3	protein-coding	0.010000	0.487562	
mm_55057.1	chr6	49047766	49047966	-	1	NA	NA	NA	11348	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.015000	0.467662	
mm_134878.1	chr16	28929895	28930095	-	1	NA	NA	NA	-297	NM_177718	239796	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.080000	0.636816	-89(CCCTTTAAATGG,+,0.00),-89(CCCTTTAAATGG,-,0.00)
mm_130523.1	chr15	98881271	98881471	-	1	NA	NA	NA	43	NM_026967	69159	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding	0.090000	0.681592	
mm_113130.1	chr13	24614480	24614680	+	1	NA	NA	NA	-26	NM_001286101	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.020000	0.552239	
mm_31010.1	chr4	40269799	40269999	+	1	NA	NA	NA	-58	NM_134097	106021	Mm.251548	NM_134097	ENSMUSG00000036822	Topors	AW105885|LUN|TP53BPL|p53BP3/LUN	topoisomerase I binding, arginine/serine-rich	protein-coding	0.045000	0.592040	
mm_149373.1	chr19	11375365	11375565	+	1	NA	NA	NA	-23	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.005000	0.402985	
mm_169266.1	chr13	84690916	84691116	-	1	NA	NA	NA	468720	NM_175187	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	0.000000	0.398010	
mm_24412.1	chr3	90484435	90484635	+	1	NA	NA	NA	6478	NM_133854	20615	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	0.010000	0.452736	
mm_18603.1	chr2	67573897	67574097	-	1	NA	NA	NA	-101460	NR_106083	102465706		NR_106083	ENSMUSG00000098299	Mir7224	Gm27971|mmu-mir-7224	microRNA 7224	ncRNA	0.020000	0.422886	
mm_11334.1	chr2	30594943	30595143	+	1	NA	NA	NA	-1	NM_030137	78617	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.040000	0.477612	
mm_122925.1	chr14	54961115	54961315	-	1	NA	NA	NA	5392	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.035000	0.606965	
mm_56956.1	chr6	120037244	120037444	-	1	NA	NA	NA	1311	NM_001199083	232341	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0.080000	0.641791	
mm_5886.1	chr1	54142621	54142821	-	1	NA	NA	NA	52313	NM_001001883	329152	Mm.132150	NM_172655	ENSMUSG00000042807	Hecw2	A730039N16Rik|D030049F17Rik|Gm971|Nedl2|mKIAA1301	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.010000	0.318408	
mm_43208.1	chr5	129204230	129204430	+	1	NA	NA	NA	107580	NM_001347486	243277	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding	0.020000	0.462687	
mm_147432.1	chr18	46447541	46447741	-	1	NA	NA	NA	18175	NR_045438	72076	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.010000	0.502488	-35(AGCTTTAAAGAG,-,0.00),-33(CTTTAAAGAGAG,+,0.00)
mm_29646.1	chr3	121900450	121900650	-	1	NA	NA	NA	-52776	NM_172525	214137	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.030000	0.482587	
mm_24759.1	chr3	95481144	95481344	+	1	NA	NA	NA	-17966	NM_007802	13038	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.000000	0.417910	
mm_148689.1	chr19	5727082	5727282	+	1	NA	NA	NA	-865	NM_053252	114601	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0.015000	0.482587	
mm_82555.1	chr9	20976668	20976868	-	1	NA	NA	NA	25	NM_010333	14739	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0.070000	0.651741	
mm_109632.1	chr12	112767711	112767911	+	1	NA	NA	NA	7156	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.035000	0.572139	
mm_103711.1	chr11	79518738	79518938	-	1	NA	NA	NA	4924	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.000000	0.393035	
mm_98809.1	chr11	97161433	97161633	+	1	NA	NA	NA	-11821	NM_198100	73174	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0.025000	0.393035	
mm_52989.1	chr6	123265241	123265441	+	1	NA	NA	NA	3234	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.020000	0.442786	
mm_114303.1	chr13	59585213	59585413	+	1	NA	NA	NA	-20	NM_030153	78689	Mm.253902	NM_030153	ENSMUSG00000021555	Naa35	A330021G12Rik|A330027C19Rik|AI158944|C030004C14Rik|Mak10	N(alpha)-acetyltransferase 35, NatC auxiliary subunit	protein-coding	0.150000	0.731343	
mm_94523.1	chr11	9048605	9048805	+	1	NA	NA	NA	113	NM_001037928	626870	Mm.369429	NM_001037928	ENSMUSG00000040978	Gm11992	OTTMUSG00000005148	predicted gene 11992	protein-coding	0.040000	0.542289	
mm_82216.1	chr9	3004731	3004931	-	1	NA	NA	NA	33912	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.020000	0.358209	
mm_101495.1	chr11	31824337	31824537	-	1	NA	NA	NA	110	NR_102310	414116	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.010000	0.527363	
mm_68622.1	chr7	118116057	118116257	-	1	NA	NA	NA	-10	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0.070000	0.517413	
mm_143978.1	chr17	87440818	87441018	-	1	NA	NA	NA	6017	NM_007589	12314	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017	calmodulin 2	protein-coding	0.005000	0.338308	
mm_86284.1	chr9	121857505	121857705	-	1	NA	NA	NA	395	NM_019814	56295	Mm.347915	NM_019814	ENSMUSG00000038412	Higd1a	2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1	HIG1 domain family, member 1A	protein-coding	0.105000	0.696517	
mm_57764.1	chr6	129233890	129234090	-	1	NA	NA	NA	4055	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.020000	0.477612	
mm_43644.1	chr5	138256030	138256230	+	1	NA	NA	NA	648	NM_001081108	66096	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	0.005000	0.542289	
mm_25026.1	chr3	98127005	98127205	+	1	NA	NA	NA	-33529	NM_027665	71078	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.020000	0.422886	
mm_113422.1	chr13	34037574	34037774	+	1	NA	NA	NA	33	NM_026512	68021	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0.100000	0.661692	
mm_130249.1	chr15	96641367	96641567	-	1	NA	NA	NA	495	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.110000	0.666667	-32(GCTTATAAACTG,+,0.00)
mm_7445.1	chr1	120120915	120121115	-	1	NA	NA	NA	81	NM_007830	13167	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	0.080000	0.597015	-34(TGCTTTTAAAGG,-,0.00),-33(GCTTTTAAAGGC,+,0.00),-33(GCTTTTAAAGGC,-,0.00),-32(CTTTTAAAGGCG,+,0.00)
mm_52839.1	chr6	121641243	121641443	+	1	NA	NA	NA	5170	NM_175628	232345	Mm.30151	NM_175628	ENSMUSG00000030111	A2m	A2mp	alpha-2-macroglobulin	protein-coding	0.025000	0.472637	
mm_46707.1	chr5	110286051	110286251	-	1	NA	NA	NA	17	NM_008993	19301	Mm.21853	NM_008993	ENSMUSG00000029499	Pxmp2	22kDa|PMP22	peroxisomal membrane protein 2	protein-coding	0.115000	0.751244	
mm_1713.1	chr1	75236562	75236762	+	1	NA	NA	NA	-40	NM_001159885	56812	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.065000	0.681592	
mm_19125.1	chr2	80129028	80129228	-	1	NA	NA	NA	-157	NM_016744	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.030000	0.497512	
mm_140029.1	chr17	74016897	74017097	+	1	NA	NA	NA	30919	NM_053188	94224	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.005000	0.427861	
mm_7334.1	chr1	105356586	105356786	-	1	NA	NA	NA	24	NM_178779	320311	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	0.090000	0.701493	
mm_12531.1	chr2	72207596	72207796	+	1	NA	NA	NA	-77941	NM_023057	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.005000	0.437811	
mm_156663.1	chrX	157817823	157818023	+	1	NA	NA	NA	-512	NM_001081667	245683	Mm.295846	NM_001081667	ENSMUSG00000047485	Klhl34	Gm388	kelch-like 34	protein-coding	0.035000	0.597015	
mm_28664.1	chr3	95266056	95266256	-	1	NA	NA	NA	-14963	NM_134253	171388	Mm.331209	NM_134253	ENSMUSG00000028115	Bnipl	1700128A13Rik|BNIP-S|BNIPL1|BNIPL2|PP73|PP753	BCL2/adenovirus E1B 19kD interacting protein like	protein-coding	0.010000	0.457711	
mm_87130.1	chr10	34282139	34282339	+	1	NA	NA	NA	49	NM_009433	22110	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.105000	0.691542	
mm_49486.1	chr6	29536968	29537168	+	1	NA	NA	NA	7786	NM_001252382	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.005000	0.522388	
mm_19215.1	chr2	84643518	84643718	-	1	NA	NA	NA	6892	NM_001085453	12388	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.005000	0.328358	-89(GGCTATATAAAT,-,0.00),-87(CTATATAAATGG,-,0.00)
mm_66924.1	chr7	61311565	61311765	-	1	NA	NA	NA	303662	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.015000	0.373134	
mm_447.1	chr1	35282524	35282724	+	1	NA	NA	NA	432665	NM_145516	226971	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.005000	0.407960	
mm_125930.1	chr15	76247290	76247490	+	1	NA	NA	NA	583	NM_023168	66168	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	0.030000	0.572139	-31(GTGCTTAAGAGG,-,0.00)
mm_130313.1	chr15	97167141	97167341	-	1	NA	NA	NA	-79866	NM_172293	239647	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	0.025000	0.472637	
mm_119518.1	chr14	47472534	47472734	+	1	NA	NA	NA	73	NM_001146085	78938	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	0.115000	0.731343	
mm_88029.1	chr10	67229911	67230111	+	1	NA	NA	NA	44261	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.020000	0.467662	
mm_33395.1	chr4	129820208	129820408	+	1	NA	NA	NA	-171	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.175000	0.781095	
mm_46697.1	chr5	110108040	110108240	-	1	NA	NA	NA	57	NM_145147	107999	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	0.140000	0.721393	
mm_109331.1	chr12	109571556	109571756	+	1	NA	NA	NA	-334	NR_030438	751547		NR_030438	ENSMUSG00000076316	Mir673	Mirn673|mir-673|mmu-mir-673	microRNA 673	ncRNA	0.010000	0.492537	
mm_96076.1	chr11	59887117	59887317	+	1	NA	NA	NA	-34282	NR_130986	69854	Mm.57859	NR_130986	ENSMUSG00000085551	1810063I02Rik	-	RIKEN cDNA 1810063I02 gene	ncRNA	0.005000	0.432836	
mm_105157.1	chr11	101466153	101466353	-	1	NA	NA	NA	-54	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.080000	0.676617	-33(CCCTTTAAGTCC,+,0.00)
mm_114770.1	chr13	88821487	88821687	+	1	NA	NA	NA	115	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.110000	0.681592	
mm_151542.1	chr19	59171681	59171881	+	1	NA	NA	NA	-1752	NM_009501	22326	Mm.23801	NM_009501	ENSMUSG00000006270	Vax1	-	ventral anterior homeobox 1	protein-coding	0.085000	0.676617	
mm_53568.1	chr6	137252392	137252592	+	1	NA	NA	NA	193	NM_011216	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.095000	0.681592	
mm_86445.1	chr10	4243809	4244009	+	1	NA	NA	NA	-22420	NM_031185	83397	Mm.27481	NM_031185	ENSMUSG00000038587	Akap12	AI317366|SSeCKS|Srcs5|Tsga12	A kinase (PRKA) anchor protein (gravin) 12	protein-coding	0.025000	0.572139	-33(TTCTATAAAAGG,-,0.00)
mm_102844.1	chr11	69367972	69368172	-	1	NA	NA	NA	1354	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.030000	0.592040	
mm_99679.1	chr11	105994521	105994721	+	1	NA	NA	NA	-54	NM_001101453	217246	Mm.296699	NM_001101453	ENSMUSG00000101605	Ace3	EG217246	angiotensin I converting enzyme (peptidyl-dipeptidase A) 3	protein-coding	0.010000	0.507463	
mm_157867.1	chrX	75379689	75379889	-	1	NA	NA	NA	252	NM_007977	14069	Mm.1805	NM_007977	ENSMUSG00000031196	F8	Cf-8|Cf8|FVIII	coagulation factor VIII	protein-coding	0.000000	0.343284	78(GTTCTTAAAAGC,-,0.00)
mm_28391.1	chr3	90019105	90019305	-	1	NA	NA	NA	-7995	NR_106129	102465771		NR_106129	ENSMUSG00000098397	Mir7669	Gm27996|mmu-mir-7669	microRNA 7669	ncRNA	0.025000	0.497512	
mm_10962.1	chr2	25701191	25701391	+	1	NA	NA	NA	1217	NM_153558	227627	Mm.44630	NM_153558	ENSMUSG00000062061	Obp2a	BC027556|Lcn13	odorant binding protein 2A	protein-coding	0.005000	0.542289	-34(GGTCCTAAAAGC,-,0.00)
mm_3708.1	chr1	153900487	153900687	+	1	NA	NA	NA	658	NM_008131	14645	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.105000	0.716418	
mm_145757.1	chr18	64887722	64887922	+	1	NA	NA	NA	66	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.165000	0.805970	
mm_20453.1	chr2	129364914	129365114	-	1	NA	NA	NA	-4888	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.015000	0.507463	
mm_5934.1	chr1	55363292	55363492	-	1	NA	NA	NA	77	NM_029267	75388	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	bol, boule-like (Drosophila)	protein-coding	0.135000	0.721393	
mm_4942.1	chr1	191183596	191183796	+	1	NA	NA	NA	-363	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.030000	0.577114	
mm_146927.1	chr18	31949705	31949905	-	1	NA	NA	NA	-169	NM_001025381	574402	Mm.391108	NM_001025381	ENSMUSG00000052229	Gpr17	AI853548	G protein-coupled receptor 17	protein-coding	0.025000	0.587065	
mm_54058.1	chr6	13839829	13840029	-	1	NA	NA	NA	13	NM_001330666	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.015000	0.343284	
mm_21024.1	chr2	152412823	152413023	-	1	NA	NA	NA	2121	NM_175126	67917	Mm.391810	NM_175126	ENSMUSG00000074682	Zcchc3	2810406K24Rik	zinc finger, CCHC domain containing 3	protein-coding	0.015000	0.462687	
mm_144429.1	chr18	21001684	21001884	+	1	NA	NA	NA	-173	NM_001303011	56515	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	0.110000	0.701493	
mm_23447.1	chr3	59952051	59952251	+	1	NA	NA	NA	-158	NR_037189	676914	Mm.228502	NR_037189	ENSMUSG00000070465	Gm9696	-	arylacetamide deacetylase-like 2 pseudogene	pseudo	0.005000	0.353234	
mm_54102.1	chr6	16883924	16884124	-	1	NA	NA	NA	14417	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.005000	0.338308	
mm_10651.1	chr2	20669595	20669795	+	1	NA	NA	NA	150182	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.010000	0.457711	
mm_60186.1	chr7	43253656	43253856	+	1	NA	NA	NA	39717	NM_001177525	100170401		NM_001177525		EU599041	TU7	expressed sequence EU599041	protein-coding	0.020000	0.542289	
mm_165029.1	chr19	32757631	32757831	+	1	NA	NA	NA	154	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.130000	0.756219	
mm_127712.1	chr15	103013907	103014107	+	1	NA	NA	NA	-1	NM_175730	15424	Mm.103825	NM_175730	ENSMUSG00000022485	Hoxc5	AI181837|Hox-3.4|Hox-6.2	homeobox C5	protein-coding	0.020000	0.422886	-92(CTCTATTTAAGG,-,0.00)
mm_46848.1	chr5	113614247	113614447	-	1	NA	NA	NA	36043	NM_008153	14747	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.060000	0.587065	
mm_138374.1	chr17	35004586	35004786	+	1	NA	NA	NA	3779	NM_011690	22321	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.005000	0.527363	
mm_156341.1	chrX	139009980	139010180	+	1	NA	NA	NA	75156	NM_177920	331535	Mm.211704	NM_177920	ENSMUSG00000031271	Serpina7	C730040N12Rik|Tbg	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7	protein-coding	0.010000	0.467662	
mm_129879.1	chr15	83447888	83448088	-	1	NA	NA	NA	-15138	NM_001159510	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.020000	0.477612	
mm_50671.1	chr6	51544446	51544646	+	1	NA	NA	NA	23	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.010000	0.472637	
mm_58131.1	chr6	140624563	140624763	-	1	NA	NA	NA	-246	NM_001309437	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.070000	0.666667	
mm_2448.1	chr1	100042684	100042884	+	1	NA	NA	NA	270019	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0.005000	0.398010	
mm_166770.1	chr6	135362255	135362455	+	1	NA	NA	NA	-576	NM_010128	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.010000	0.477612	
mm_39497.1	chr5	21056179	21056379	+	1	NA	NA	NA	-482	NM_011203	19248	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.095000	0.706468	
mm_69773.1	chr7	141016744	141016944	-	1	NA	NA	NA	48	NM_001033632	213002	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.005000	0.442786	-97(TTCTATAAAAGT,-,0.00)
mm_48888.1	chr5	151233957	151234157	-	1	NA	NA	NA	-43864	NM_146258	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.030000	0.512438	
mm_156650.1	chrX	157702671	157702871	+	1	NA	NA	NA	3798	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.020000	0.482587	
mm_53054.1	chr6	124808846	124809046	+	1	NA	NA	NA	28	NM_001306053	14794	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.075000	0.681592	
mm_156811.1	chrX	163958671	163958871	+	1	NA	NA	NA	-105	NM_178794	22184	Mm.426178	NM_009453	ENSMUSG00000031370	Zrsr2	35kDa|5031411E02Rik|A230052C13Rik|C77286|U2af1-rs2|URP	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	protein-coding	0.050000	0.552239	
mm_15110.1	chr2	153641902	153642102	+	1	NA	NA	NA	-7447	NM_001003963	13436	Mm.89772	NM_010068	ENSMUSG00000027478	Dnmt3b	MmuIIIB	DNA methyltransferase 3B	protein-coding	0.000000	0.442786	
mm_151729.1	chr19	4872255	4872455	-	1	NA	NA	NA	5554	NM_013456	11474	Mm.5316	NM_013456	ENSMUSG00000006457	Actn3	-	actinin alpha 3	protein-coding	0.020000	0.487562	-17(CCTTTTATACTC,+,0.00)
mm_138391.1	chr17	35050210	35050410	+	1	NA	NA	NA	67	NM_033444	114584	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.050000	0.646766	
mm_127828.1	chr15	6555521	6555721	-	1	NA	NA	NA	-24226	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.010000	0.447761	-79(TCTCTTATAGTC,+,0.00)
mm_32612.1	chr4	112284707	112284907	+	1	NA	NA	NA	52386	NM_001102474	195564	Mm.259652	NM_177578	ENSMUSG00000070868	Skint3	A430090E18Rik|Skint-3	selection and upkeep of intraepithelial T cells 3	protein-coding	0.005000	0.378109	
mm_135878.1	chr16	63758351	63758551	-	1	NA	NA	NA	105706	NM_010140	13837	Mm.1977	NM_010140	ENSMUSG00000052504	Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding	0.005000	0.283582	
mm_6496.1	chr1	74268096	74268296	-	1	NA	NA	NA	-10404	NM_174985	227289	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.010000	0.378109	
mm_106409.1	chr11	119040821	119041021	-	1	NA	NA	NA	-8	NM_013926	30951	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.075000	0.666667	
mm_156286.1	chrX	136837275	136837475	+	1	NA	NA	NA	14629	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.323383	
mm_88246.1	chr10	72658024	72658224	+	1	NA	NA	NA	3278	NM_001293683	52696	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	0.005000	0.328358	
mm_136334.1	chr16	92466034	92466234	-	1	NA	NA	NA	35	NM_001081549	54720	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.165000	0.810945	
mm_38827.1	chr4	149126573	149126773	-	1	NA	NA	NA	90	NM_007745	12854	Mm.6204	NM_007745	ENSMUSG00000028971	Cort	CST|PCST	cortistatin	protein-coding	0.045000	0.606965	
mm_625.1	chr1	40225023	40225223	+	1	NA	NA	NA	43	NM_008362	16177	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.020000	0.482587	
mm_23702.1	chr3	68761375	68761575	+	1	NA	NA	NA	70051	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.025000	0.492537	
mm_113007.1	chr13	21878103	21878303	+	1	NA	NA	NA	18846	NR_035500	100316716		NR_035500	ENSMUSG00000088148	Mir1983	mmu-mir-1983	microRNA 1983	ncRNA	0.010000	0.373134	-23(CTTTTAATAGCC,+,0.00)
mm_106656.1	chr11	121204572	121204772	-	1	NA	NA	NA	-24	NM_025402	66179	Mm.390403	NM_025402	ENSMUSG00000025169	Ogfod3	1110031I02Rik	2-oxoglutarate and iron-dependent oxygenase domain containing 3	protein-coding	0.135000	0.711443	
mm_55816.1	chr6	83033349	83033549	-	1	NA	NA	NA	22	NM_010070	13448	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.095000	0.721393	
mm_164058.1	chr14	106274665	106274865	+	1	NA	NA	NA	168567	NR_073203	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0.010000	0.308458	76(TCTTTTAGGCTC,+,0.00)
mm_119358.1	chr14	41115053	41115253	+	1	NA	NA	NA	10120	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.005000	0.452736	
mm_173285.1	chrY	17151505	17151705	+	1	NA	NA	NA	57726	NM_001199332	100041550	Mm.485768	NM_001199332	ENSMUSG00000095520	Gm20877	-	predicted gene, 20877	protein-coding	0.015000	0.462687	
mm_11944.1	chr2	52881907	52882107	+	1	NA	NA	NA	24139	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.020000	0.373134	
mm_169351.1	chr14	20982572	20982772	+	1	NA	NA	NA	53239	NM_009502	22330	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0.025000	0.512438	67(GCTCATAAAGAC,+,0.00)
mm_83203.1	chr9	41580697	41580897	-	1	NA	NA	NA	-456	NR_015483	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.050000	0.532338	
mm_162841.1	chr10	85102745	85102945	+	1	NA	NA	NA	218	NM_001013028	103266	Mm.335025	NM_001013028	ENSMUSG00000060935	Tmem263	AI597468	transmembrane protein 263	protein-coding	0.130000	0.721393	
mm_69605.1	chr7	137125665	137125865	-	1	NA	NA	NA	-108918	NR_045885	100038555	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	ENSMUSG00000073800	predicted gene 10578	ncRNA	0.015000	0.567164	
mm_28563.1	chr3	93444667	93444867	-	1	NA	NA	NA	2437	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.065000	0.616915	
mm_110796.1	chr12	72178646	72178846	-	1	NA	NA	NA	6283	NM_028687	73936	Mm.475741	NM_028687	ENSMUSG00000021086	Ccdc175	4930403N07Rik	coiled-coil domain containing 175	protein-coding	0.010000	0.368159	
mm_147688.1	chr18	60733036	60733236	-	1	NA	NA	NA	-19747	NM_008306	15531	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.025000	0.552239	-89(GGTTCTAAAGGG,-,0.00)
mm_44524.1	chr5	24392392	24392592	-	1	NA	NA	NA	-349	NM_001002897	213948	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0.005000	0.412935	
mm_169287.1	chr13	9806094	9806294	-	1	NA	NA	NA	-40873	NM_144516	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.020000	0.517413	-12(CCCTTTATAAGT,-,0.00)
mm_114359.1	chr13	61003934	61004134	+	1	NA	NA	NA	1877	NM_012007	26898	Mm.31948	NM_012007	ENSMUSG00000055298	Ctsj	CATP|CatRLP|Ctsp	cathepsin J	protein-coding	0.000000	0.398010	
mm_92922.1	chr10	84440515	84440715	-	1	NA	NA	NA	-144	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.145000	0.761194	
mm_16118.1	chr2	169915023	169915223	+	1	NA	NA	NA	48064	NR_131974	446211	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0.035000	0.547264	
mm_140319.1	chr17	86424096	86424296	+	1	NA	NA	NA	-137018	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.005000	0.452736	
mm_117538.1	chr13	83599646	83599846	-	1	NA	NA	NA	26139	NM_001347569	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.010000	0.407960	
mm_132943.1	chr16	49867761	49867961	+	1	NA	NA	NA	12207	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.030000	0.393035	
mm_83481.1	chr9	45906810	45907010	-	1	NA	NA	NA	1	NM_001310840	235315	Mm.3255	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	0.110000	0.726368	
mm_123662.1	chr14	69244241	69244441	-	1	NA	NA	NA	40762	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.000000	0.328358	
mm_102043.1	chr11	51997763	51997963	-	1	NA	NA	NA	2603	NM_009458	22210	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	2610301N02Rik|E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0.005000	0.472637	
mm_108393.1	chr12	80948594	80948794	+	1	NA	NA	NA	3195	NM_001347415	20384	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0.010000	0.288557	72(GTCTTTAAAGGA,-,0.00)
mm_104927.1	chr11	99993895	99994095	-	1	NA	NA	NA	-1	NM_001099774	77914	Mm.293692	NM_001099774	ENSMUSG00000078252	Krtap17-1	A030006P16Rik	keratin associated protein 17-1	protein-coding	0.030000	0.577114	-33(GGATATAAAAGC,-,0.00)
mm_159078.1	chr2	26294643	26294843	-	1	NA	NA	NA	-186	NM_177841	329366	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding	0.010000	0.522388	
mm_67941.1	chr7	100176507	100176707	-	1	NA	NA	NA	-63	NM_001190869	57442	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	0.020000	0.477612	
mm_129980.1	chr15	86021374	86021574	-	1	NA	NA	NA	12303	NM_009886	12614	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	0.035000	0.562189	
mm_120164.1	chr14	60750115	60750315	+	1	NA	NA	NA	17311	NM_001310594	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.040000	0.482587	
mm_122357.1	chr14	39146730	39146930	-	1	NA	NA	NA	248528	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA	0.010000	0.407960	
mm_5628.1	chr1	40397413	40397613	-	1	NA	NA	NA	-32057	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.010000	0.497512	
mm_59181.1	chr7	24461466	24461666	+	1	NA	NA	NA	-917	NM_011113	18793	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.025000	0.527363	
mm_42952.1	chr5	123015224	123015424	+	1	NA	NA	NA	250	NM_175423	109305	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.145000	0.776119	
mm_94753.1	chr11	21116808	21117008	+	1	NA	NA	NA	25584	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.005000	0.447761	
mm_43388.1	chr5	135733423	135733623	+	1	NA	NA	NA	2366	NR_106001	102466791		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.055000	0.601990	
mm_161790.1	chr17	46484102	46484302	-	1	NA	NA	NA	3473	NM_001162864	106763	Mm.297613	NM_175351	ENSMUSG00000015599	Ttbk1	AU017937|AW048023|C330008L01Rik	tau tubulin kinase 1	protein-coding	0.050000	0.651741	-37(GCTCTTAAGGAC,+,0.00)
mm_132750.1	chr16	44160008	44160208	+	1	NA	NA	NA	-13289	NM_001029889	207806	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.000000	0.417910	
mm_64324.1	chr7	141949889	141950089	+	1	NA	NA	NA	238	NM_001009929	75770	Mm.274868	NM_029426	ENSMUSG00000053046	Brsk2	4833424K13Rik|SAD-A|SADA	BR serine/threonine kinase 2	protein-coding	0.200000	0.860697	
mm_131637.1	chr16	20424343	20424543	+	1	NA	NA	NA	1951	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.015000	0.432836	-34(AAGCTTAAAAGG,-,0.00),-32(GCTTAAAAGGGA,+,0.00)
mm_144666.1	chr18	34408409	34408609	+	1	NA	NA	NA	-914	NM_001163004	53871	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	0.030000	0.492537	-55(GACCATTTAAAG,-,0.00),-53(CCATTTAAAGTC,+,0.00)
mm_17234.1	chr2	25580147	25580347	-	1	NA	NA	NA	-148	NM_001005424	381353	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	-	predicted gene 996	protein-coding	0.025000	0.527363	
mm_73783.1	chr8	117055350	117055550	+	1	NA	NA	NA	26999	NM_029686	76645	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.010000	0.552239	
mm_138107.1	chr17	34119808	34120008	+	1	NA	NA	NA	-8	NR_037970	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.125000	0.656716	
mm_74702.1	chr8	16670133	16670333	-	1	NA	NA	NA	-501395	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0.010000	0.348259	
mm_79038.1	chr9	46207842	46208042	+	1	NA	NA	NA	-20688	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.045000	0.567164	
mm_165239.1	chr2	62343430	62343630	-	1	NA	NA	NA	68701	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.000000	0.402985	
mm_34781.1	chr4	154082138	154082338	+	1	NA	NA	NA	14935	NM_001126330	22062	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0.000000	0.542289	
mm_6462.1	chr1	74030735	74030935	-	1	NA	NA	NA	93612	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.010000	0.522388	
mm_67753.1	chr7	92661590	92661790	-	1	NA	NA	NA	8222	NM_029078	74737	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	0.000000	0.328358	
mm_155177.1	chrX	53687993	53688193	+	1	NA	NA	NA	1566	NR_102724	100504039		NR_102724		LOC100504039	-	uncharacterized LOC100504039	ncRNA	0.010000	0.492537	
mm_64833.1	chr7	12926582	12926782	-	1	NA	NA	NA	-734	NM_029809	381845	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0.010000	0.472637	
mm_19919.1	chr2	115894452	115894652	-	1	NA	NA	NA	170067	NM_001346044	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.000000	0.427861	
mm_93759.1	chr10	120193274	120193474	-	1	NA	NA	NA	8163	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.025000	0.507463	
mm_110020.1	chr12	16753101	16753301	-	1	NA	NA	NA	4038	NM_001252071	268527	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	0.015000	0.532338	-33(CCCTTAATGGGG,+,0.00)
mm_105929.1	chr11	115123566	115123766	-	1	NA	NA	NA	10326	NM_001347648	246746	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.005000	0.492537	-68(GCTTTTATAGTG,+,0.00)
mm_99403.1	chr11	102216683	102216883	+	1	NA	NA	NA	13367	NR_106179	102465892		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0.020000	0.592040	
mm_58302.1	chr6	146113086	146113286	-	1	NA	NA	NA	179039	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.010000	0.547264	
mm_52023.1	chr6	94698812	94699012	+	1	NA	NA	NA	1233	NM_008377	16206	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.005000	0.452736	
mm_137202.1	chr17	23917358	23917558	+	1	NA	NA	NA	0	NM_001077633	620253	Mm.390964	NM_001077633	ENSMUSG00000057417	Dcpp3	Dcpp-3|EG620253|SPT-3	demilune cell and parotid protein 3	protein-coding	0.005000	0.582090	-34(AAGCATATAAGG,-,0.00),-32(GCATATAAGGGG,+,0.00)
mm_133970.1	chr16	4320611	4320811	-	1	NA	NA	NA	91482	NR_003628	436332	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	0.035000	0.507463	
mm_32804.1	chr4	117120630	117120830	+	1	NA	NA	NA	4995	NR_024078	78611	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0.090000	0.636816	
mm_19389.1	chr2	91328772	91328972	-	1	NA	NA	NA	63757	NM_023854	77038	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0.010000	0.457711	
mm_143466.1	chr17	71002301	71002501	-	1	NA	NA	NA	132	NM_026064	67268	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0.075000	0.626866	
mm_158106.1	chrX	102071096	102071296	-	1	NA	NA	NA	111	NM_001278534	331474	Mm.23297	NM_183318	ENSMUSG00000049191	Rgag4	6430402L03Rik|Mar5|Mart5|mKIAA2001	retrotransposon gag domain containing 4	protein-coding	0.085000	0.656716	-32(GAGCTTAAAAGG,-,0.00),-30(GCTTAAAAGGCG,+,0.00)
mm_11618.1	chr2	34608416	34608616	+	1	NA	NA	NA	146716	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.010000	0.502488	
mm_81094.1	chr9	106371994	106372194	+	1	NA	NA	NA	3462	NM_153459	235584	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.015000	0.631841	
mm_47060.1	chr5	116392647	116392847	-	1	NA	NA	NA	30117	NM_030704	80888	Mm.21549	NM_030704	ENSMUSG00000041548	Hspb8	AU018630|AW413033|Cryac|D5Ucla4|E2IG1|H11|H11K|HSP20-like|HSP22	heat shock protein 8	protein-coding	0.015000	0.562189	
mm_41024.1	chr5	81583118	81583318	+	1	NA	NA	NA	541495	NR_138557	67327	Mm.87058	NR_138557		1700031L13Rik	-	RIKEN cDNA 1700031L13 gene	ncRNA	0.010000	0.422886	
mm_72622.1	chr8	84638663	84638863	+	1	NA	NA	NA	24089	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.115000	0.716418	
mm_131998.1	chr16	25286761	25286961	+	1	NA	NA	NA	44	NM_175165	71338	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding	0.010000	0.532338	
mm_112686.1	chr13	16030717	16030917	+	1	NA	NA	NA	18966	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.015000	0.407960	
mm_125023.1	chr15	25724717	25724917	+	1	NA	NA	NA	102267	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.005000	0.517413	
mm_8430.1	chr1	152559646	152559846	-	1	NA	NA	NA	65471	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.015000	0.373134	
mm_49184.1	chr6	15185130	15185330	+	1	NA	NA	NA	-276	NM_212435	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.005000	0.427861	
mm_153610.1	chr19	43968453	43968653	-	1	NA	NA	NA	17967	NM_030703	93721	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	0.025000	0.572139	
mm_139457.1	chr17	55952681	55952881	+	1	NA	NA	NA	158	NM_015766	50498	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	0.010000	0.572139	
mm_5303.1	chr1	21961394	21961594	-	1	NA	NA	NA	448	NM_001160139	226922	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	0.135000	0.781095	
mm_65951.1	chr7	30421522	30421722	-	1	NA	NA	NA	-1682	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.050000	0.567164	
mm_153166.1	chr19	34493257	34493457	-	1	NA	NA	NA	-18222	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.010000	0.462687	21(GCTTTTATATTC,+,0.00)
mm_107515.1	chr12	40248083	40248283	+	1	NA	NA	NA	24819	NR_045157	629820	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.010000	0.557214	
mm_90956.1	chr10	13209836	13210036	-	1	NA	NA	NA	-16799	NM_181470	353258	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	0.005000	0.293532	
mm_71465.1	chr8	46534516	46534716	+	1	NA	NA	NA	-17453	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.050000	0.547264	
mm_133745.1	chr16	94084826	94085026	+	1	NA	NA	NA	-334	NM_011377	20465	Mm.4775	NM_011377	ENSMUSG00000062713	Sim2	bHLHe15	single-minded homolog 2 (Drosophila)	protein-coding	0.100000	0.656716	-77(CCTTTTCTGGGC,+,0.00)
mm_129222.1	chr15	76583874	76584074	-	1	NA	NA	NA	7615	NR_073123	268822	Mm.181624	NM_172960	ENSMUSG00000022550	Adck5	A230108P17	aarF domain containing kinase 5	protein-coding	0.020000	0.522388	
mm_32242.1	chr4	102466955	102467155	+	1	NA	NA	NA	-103005	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.000000	0.243781	74(TTTTTTATAGTC,+,0.00)
mm_66724.1	chr7	46115984	46116184	-	1	NA	NA	NA	-15320	NM_001204411	16514	Mm.333863	NM_010602	ENSMUSG00000096146	Kcnj11	Kir6.2|mBIR	potassium inwardly rectifying channel, subfamily J, member 11	protein-coding	0.015000	0.547264	
mm_77106.1	chr8	111081043	111081243	-	1	NA	NA	NA	565	NM_181549	353287	Mm.135495	NM_181549	ENSMUSG00000033633	Clec18a	Mrcl	C-type lectin domain family 18, member A	protein-coding	0.010000	0.517413	
mm_43930.1	chr5	145083964	145084164	+	1	NA	NA	NA	195	NM_019767	56443	Mm.371610	NM_019767	ENSMUSG00000029621	Arpc1a	0610010H08Rik|1110030K07Rik|41kDa|AA407347|Sid32|Sid329	actin related protein 2/3 complex, subunit 1A	protein-coding	0.065000	0.636816	
mm_65644.1	chr7	28014053	28014253	-	1	NA	NA	NA	-38	NM_001254951	100043772	Mm.129275	NM_001100456	ENSMUSG00000096916	Zfp850	C130069I09Rik|Gm4636	zinc finger protein 850	protein-coding	0.055000	0.636816	
mm_53452.1	chr6	134640958	134641158	+	1	NA	NA	NA	118	NM_026371	67774	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	0.130000	0.721393	
mm_103186.1	chr11	70615452	70615652	-	1	NA	NA	NA	-342	NM_001145537	668433	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.055000	0.616915	
mm_102308.1	chr11	55608480	55608680	-	1	NA	NA	NA	-382	NM_020492	14654	Mm.89320	NM_020492	ENSMUSG00000000263	Glra1	nmf11|oscillator|ot|spasmodic|spd	glycine receptor, alpha 1 subunit	protein-coding	0.030000	0.537313	
mm_86274.1	chr9	121792260	121792460	-	1	NA	NA	NA	147	NM_029095	74770	Mm.44195	NM_029095	ENSMUSG00000032523	Hhatl	1110011D13Rik|Gup1|Mg56	hedgehog acyltransferase-like	protein-coding	0.050000	0.691542	
mm_43634.1	chr5	138229644	138229844	+	1	NA	NA	NA	3840	NM_001013773	381680	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0.005000	0.402985	
mm_138968.1	chr17	44777138	44777338	+	1	NA	NA	NA	67	NM_178652	109115	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	0.080000	0.696517	
mm_81480.1	chr9	109945884	109946084	+	1	NA	NA	NA	14210	NM_008633	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.005000	0.323383	
mm_62988.1	chr7	120328597	120328797	+	1	NA	NA	NA	13	NM_177213	320631	Mm.78330	NM_177213	ENSMUSG00000054746	Abca15	4930500I12Rik	ATP-binding cassette, sub-family A (ABC1), member 15	protein-coding	0.060000	0.547264	
mm_37434.1	chr4	122939434	122939634	-	1	NA	NA	NA	21654	NM_029662	76574	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.000000	0.427861	
mm_146418.1	chr18	84712438	84712638	+	1	NA	NA	NA	-7704	NM_173770	240479	Mm.472378	NM_173770	ENSMUSG00000047992	Fam69c	B230399E16Rik	family with sequence similarity 69, member C	protein-coding	0.010000	0.472637	
mm_38739.1	chr4	145246123	145246323	-	1	NA	NA	NA	647	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.025000	0.512438	
mm_83748.1	chr9	51165306	51165506	-	1	NA	NA	NA	-48284	NM_011136	18985	Mm.897	NM_011136	ENSMUSG00000032053	Pou2af1	BOB.1|Bob-1|Bob1|OBF-1|OBF.1|OCA-B|OCAB	POU domain, class 2, associating factor 1	protein-coding	0.010000	0.517413	
mm_111330.1	chr12	86726051	86726251	-	1	NA	NA	NA	-156	NR_136890	102635405		NR_136890		Gm32755	-	predicted gene, 32755	ncRNA	0.080000	0.686567	
mm_167107.1	chr7	112802824	112803024	+	1	NA	NA	NA	43540	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.015000	0.552239	
mm_111319.1	chr12	86078702	86078902	-	1	NA	NA	NA	239	NM_009368	21809	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.055000	0.467662	-7(CTTTTTAAATTC,+,0.00)
mm_99782.1	chr11	107337873	107338073	+	1	NA	NA	NA	132747	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.010000	0.472637	
mm_42925.1	chr5	122724511	122724711	+	1	NA	NA	NA	17067	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.040000	0.492537	-12(CTTTTTTAAAGG,-,0.00),-11(TTTTTTAAAGGC,+,0.00)
mm_4416.1	chr1	172499864	172500064	+	1	NA	NA	NA	-282	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.015000	0.472637	
mm_169454.1	chr14	61325281	61325481	-	1	NA	NA	NA	15628	NM_177337	219144	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	0.005000	0.393035	
mm_87946.1	chr10	62980147	62980347	+	1	NA	NA	NA	24	NM_027425	70432	Mm.234587	NM_027425	ENSMUSG00000020070	Rufy2	2610111M19Rik|AI844453|Denn|LZ-FYVE|ZFYVE13	RUN and FYVE domain-containing 2	protein-coding	0.135000	0.776119	
mm_143069.1	chr17	57022019	57022219	-	1	NA	NA	NA	9388	NM_010613	16549	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0.025000	0.601990	
mm_82940.1	chr9	35305260	35305460	-	1	NA	NA	NA	24255	NR_040715	71133	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.025000	0.348259	
mm_67692.1	chr7	89517482	89517682	-	1	NA	NA	NA	4	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.120000	0.786070	
mm_98240.1	chr11	88160483	88160683	+	1	NA	NA	NA	-8982	NM_001172099	103841	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	0.020000	0.557214	
mm_44190.1	chr5	3461011	3461211	-	1	NA	NA	NA	-82722	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.030000	0.522388	
mm_88.1	chr1	7089009	7089209	+	1	NA	NA	NA	189	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.145000	0.771144	
mm_14957.1	chr2	152080802	152081002	+	1	NA	NA	NA	-627	NM_001160410	545474	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.070000	0.601990	
mm_141199.1	chr17	27028470	27028670	-	1	NA	NA	NA	56	NM_007523	12018	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	0.040000	0.611940	
mm_54827.1	chr6	42585666	42585866	-	1	NA	NA	NA	11606	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.427861	
mm_155763.1	chrX	96167929	96168129	+	1	NA	NA	NA	-71897	NR_030718	100038363	Mm.30815	NR_030718	ENSMUSG00000078122	F630028O10Rik	ENSMUSG00000065522|Gm14924|OTTMUSG00000018496|mir-223	RIKEN cDNA F630028O10 gene	ncRNA	0.005000	0.298507	
mm_146058.1	chr18	69679787	69679987	+	1	NA	NA	NA	-245672	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.005000	0.447761	82(GCATTTATACGC,+,0.00)
mm_60558.1	chr7	44481157	44481357	+	1	NA	NA	NA	-3260	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.462687	
mm_2146.1	chr1	88103139	88103339	+	1	NA	NA	NA	-18	NM_201410	394435	Mm.300095	NM_201410	ENSMUSG00000090145	Ugt1a6b	A9'|Ugt1a9	UDP glucuronosyltransferase 1 family, polypeptide A6B	protein-coding	0.015000	0.507463	
mm_64939.1	chr7	16311224	16311424	-	1	NA	NA	NA	1741	NM_133234	170770	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.020000	0.562189	
mm_157161.1	chrX	9465306	9465506	-	1	NA	NA	NA	3918	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.015000	0.318408	
mm_171907.1	chr5	47666475	47666675	+	1	NA	NA	NA	-316580	NR_111900	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding	0.055000	0.547264	
mm_95256.1	chr11	44643050	44643250	+	1	NA	NA	NA	25050	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.010000	0.507463	
mm_29525.1	chr3	116634907	116635107	-	1	NA	NA	NA	-20420	NM_030016	229780	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	0.035000	0.512438	
mm_102745.1	chr11	67254675	67254875	-	1	NA	NA	NA	16963	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.040000	0.601990	
mm_159450.1	chr3	142391660	142391860	-	1	NA	NA	NA	90	NM_022554	56376	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0.020000	0.487562	
mm_81919.1	chr9	120116142	120116342	+	1	NA	NA	NA	5843	NM_144793	208638	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0.015000	0.452736	
mm_103176.1	chr11	70459799	70459999	-	1	NA	NA	NA	85	NM_023158	66102	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.025000	0.532338	
mm_66601.1	chr7	45459312	45459512	-	1	NA	NA	NA	474	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.055000	0.626866	
mm_35523.1	chr4	41211779	41211979	-	1	NA	NA	NA	63256	NM_026872	68926	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0.005000	0.497512	
mm_133129.1	chr16	65819644	65819844	+	1	NA	NA	NA	4111	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.005000	0.318408	
mm_163549.1	chr13	23533595	23533795	-	1	NA	NA	NA	-216	NM_175661	319173	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding	0.020000	0.393035	-26(GACTCTAAAAGG,-,0.00)
mm_1205.1	chr1	62725925	62726125	+	1	NA	NA	NA	22708	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.005000	0.363184	
mm_45224.1	chr5	53385413	53385613	-	1	NA	NA	NA	118407	NM_001145433	66278	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.005000	0.407960	-36(CTTTTTAAAAGG,+,0.00),-36(CTTTTTAAAAGG,-,0.00)
mm_65810.1	chr7	29008694	29008894	-	1	NA	NA	NA	25940	NM_008279	26411	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.020000	0.512438	
mm_170474.1	chr19	11121556	11121756	+	1	NA	NA	NA	9222	NM_027058	69369	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0.020000	0.378109	42(AGCTTTAAAAGA,-,0.00),43(GCTTTAAAAGAG,+,0.00)
mm_88112.1	chr10	69171654	69171854	+	1	NA	NA	NA	-36798	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.005000	0.457711	
mm_66226.1	chr7	35049458	35049658	-	1	NA	NA	NA	7008	NM_009884	12611	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.005000	0.393035	-2(TTGTTTTAAAGG,-,0.00),0(GTTTTAAAGGGC,+,0.00)
mm_116034.1	chr13	26312294	26312494	-	1	NA	NA	NA	12	NR_045933	73576	Mm.45473	NR_045933		1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	0.005000	0.562189	
mm_100109.1	chr11	115780647	115780847	+	1	NA	NA	NA	-15077	NR_049194	100885833		NR_049194	ENSMUSG00000093539	Mir5621	Gm22564|mir-5621|mmu-mir-5621	microRNA 5621	ncRNA	0.030000	0.587065	
mm_170527.1	chr19	33762706	33762906	+	1	NA	NA	NA	-855	NM_001322338	101055671		NM_001322338	ENSMUSG00000087303	Lipo2	EG668114|Gm8981	lipase, member O2	protein-coding	0.050000	0.646766	
mm_12257.1	chr2	68925994	68926194	+	1	NA	NA	NA	64653	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.010000	0.348259	
mm_4554.1	chr1	177444539	177444739	+	1	NA	NA	NA	-22	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.005000	0.477612	-89(TGGCATTAAAGG,-,0.00)
mm_41457.1	chr5	90905799	90905999	+	1	NA	NA	NA	2000	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.025000	0.313433	
mm_167295.1	chr8	47289544	47289744	-	1	NA	NA	NA	-242	NM_001114311	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.020000	0.373134	
mm_7420.1	chr1	119631568	119631768	-	1	NA	NA	NA	17332	NM_001113416	226352	Mm.253156	NM_145506	ENSMUSG00000026383	Epb41l5	1700030C16Rik|AL022914|BE37|E230025E14Rik|Epb4.1l5|Lulu1|NBL5	erythrocyte membrane protein band 4.1 like 5	protein-coding	0.000000	0.288557	
mm_162298.1	chr1	34121268	34121468	+	1	NA	NA	NA	4009	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.025000	0.542289	
mm_167998.1	chrX	170018019	170018219	+	1	NA	NA	NA	-39202	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.020000	0.378109	
mm_144233.1	chr18	10447733	10447933	+	1	NA	NA	NA	122654	NM_001083628	381157	Mm.261535	NM_001083628	ENSMUSG00000042942	Greb1l	mKIAA4095	growth regulation by estrogen in breast cancer-like	protein-coding	0.010000	0.492537	-21(CGCTCTATAAAC,-,0.00)
mm_159314.1	chr3	9250464	9250664	+	1	NA	NA	NA	-3	NM_177660	229055	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0.110000	0.701493	
mm_73833.1	chr8	117460644	117460844	+	1	NA	NA	NA	1479	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.020000	0.507463	
mm_93841.1	chr10	121626226	121626426	-	1	NA	NA	NA	-10	NM_001081056	73192	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	0.165000	0.776119	
mm_51735.1	chr6	87072993	87073193	+	1	NA	NA	NA	30247	NM_013528	14583	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	0.015000	0.462687	
mm_116054.1	chr13	27437066	27437266	-	1	NA	NA	NA	1522	NM_001271379	19112	Mm.142728	NM_011167	ENSMUSG00000021345	Prl8a6	Ghd13|PLP-C1|PLP-Ca|PLP-calpha|Prlpc|Prlpc1	prolactin family 8, subfamily a, member 6	protein-coding	0.000000	0.452736	
mm_70875.1	chr8	25101778	25101978	+	1	NA	NA	NA	-67	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.060000	0.716418	
mm_169141.1	chr13	62015805	62016005	+	1	NA	NA	NA	-113985	NM_001039239	630579	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 80	protein-coding	0.035000	0.507463	
mm_83924.1	chr9	56621124	56621324	-	1	NA	NA	NA	14424	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.055000	0.681592	
mm_72359.1	chr8	79749919	79750119	+	1	NA	NA	NA	38199	NM_026904	68999	Mm.257445	NM_026904	ENSMUSG00000036977	Anapc10	1500026N15Rik|A830003M23Rik|APC10	anaphase promoting complex subunit 10	protein-coding	0.000000	0.313433	63(TCTTATAAAGAT,+,0.00)
mm_61391.1	chr7	73112233	73112433	+	1	NA	NA	NA	-10265	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	0.005000	0.363184	
mm_138477.1	chr17	35194817	35195017	+	1	NA	NA	NA	-55	NR_105939	102465588		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	0.015000	0.532338	
mm_143129.1	chr17	57214708	57214908	-	1	NA	NA	NA	2420	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.035000	0.512438	
mm_39597.1	chr5	23501995	23502195	+	1	NA	NA	NA	67666	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.010000	0.492537	
mm_141729.1	chr17	34116236	34116436	-	1	NA	NA	NA	3564	NR_037970	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.000000	0.353234	
mm_161252.1	chr13	104179158	104179358	+	1	NA	NA	NA	160	NM_030731	81003	Mm.244190	NM_030731	ENSMUSG00000021712	Trim23	6330516O20Rik|AI450195|Arfd1	tripartite motif-containing 23	protein-coding	0.035000	0.412935	81(CTACTTAAAAGG,-,0.00)
mm_163644.1	chr13	62968638	62968838	-	1	NA	NA	NA	3845	NM_001289924	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.045000	0.532338	
mm_40473.1	chr5	53998463	53998663	+	1	NA	NA	NA	40	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.160000	0.746269	
mm_108594.1	chr12	85374192	85374392	+	1	NA	NA	NA	425	NM_026775	68581	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.110000	0.751244	
mm_118359.1	chr13	115101597	115101797	-	1	NA	NA	NA	267	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.090000	0.641791	
mm_4052.1	chr1	165790121	165790321	+	1	NA	NA	NA	1540	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.010000	0.542289	
mm_158172.1	chrX	103763450	103763650	-	1	NA	NA	NA	58438	NM_009197	20502	Mm.388973	NM_009197	ENSMUSG00000033965	Slc16a2	AW105741|Mct8|Xpct	solute carrier family 16 (monocarboxylic acid transporters), member 2	protein-coding	0.035000	0.472637	
mm_131674.1	chr16	20673007	20673207	+	1	NA	NA	NA	380	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.130000	0.825871	
mm_104529.1	chr11	96147544	96147744	-	1	NA	NA	NA	13858	NM_172799	237930	Mm.249912	NM_172799	ENSMUSG00000038756	Ttll6	4932418K24Rik|D11Moh43e|D11Moh44e|t8130b59	tubulin tyrosine ligase-like family, member 6	protein-coding	0.025000	0.542289	
mm_5770.1	chr1	51473346	51473546	-	1	NA	NA	NA	4953	NM_028696	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.005000	0.378109	76(GCCTATAAGAAG,-,0.00)
mm_91961.1	chr10	61147570	61147770	-	1	NA	NA	NA	14	NM_009163	20397	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.145000	0.781095	
mm_75821.1	chr8	70476885	70477085	-	1	NA	NA	NA	-42	NM_178771	234378	Mm.187090	NM_172052	ENSMUSG00000055707	Klhl26	C630013N10Rik|Klkl26	kelch-like 26	protein-coding	0.110000	0.696517	
mm_49492.1	chr6	29698935	29699135	+	1	NA	NA	NA	4821	NM_146173	232670	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	0.015000	0.442786	
mm_80645.1	chr9	89551381	89551581	+	1	NA	NA	NA	71505	NM_153509	209743	Mm.242899	NM_153509	ENSMUSG00000039313	AF529169	DD1|Kiaa1024	cDNA sequence AF529169	protein-coding	0.005000	0.482587	
mm_1271.1	chr1	63296110	63296310	+	1	NA	NA	NA	22941	NM_001267872	73884	Mm.86986	NM_028673	ENSMUSG00000027520	Zdbf2	4930431J08Rik|9330107J05Rik	zinc finger, DBF-type containing 2	protein-coding	0.000000	0.253731	
mm_16332.1	chr2	174329287	174329487	+	1	NA	NA	NA	-683	NM_201616	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.075000	0.661692	
mm_126390.1	chr15	80189093	80189293	+	1	NA	NA	NA	15472	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.010000	0.517413	
mm_61883.1	chr7	89632610	89632810	+	1	NA	NA	NA	-108	NM_181407	109264	Mm.334011	NM_181407	ENSMUSG00000030621	Me3	1700020C08Rik|B230207H15Rik	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding	0.050000	0.631841	
mm_94861.1	chr11	24077705	24077905	+	1	NA	NA	NA	-251	NM_016707	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.095000	0.781095	
mm_39226.1	chr4	156200729	156200929	-	1	NA	NA	NA	-11	NM_015783	100038882	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	0.025000	0.482587	
mm_24929.1	chr3	96559399	96559599	+	1	NA	NA	NA	1542	NM_023719	56338	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.015000	0.467662	
mm_34198.1	chr4	140714238	140714438	+	1	NA	NA	NA	12865	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.035000	0.597015	
mm_50918.1	chr6	57604353	57604553	+	1	NA	NA	NA	23461	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.005000	0.323383	
mm_164070.1	chr14	120277056	120277256	-	1	NA	NA	NA	1487	NM_175341	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding	0.020000	0.407960	
mm_155373.1	chrX	71555968	71556168	+	1	NA	NA	NA	151	NM_001293625	15354	Mm.336087	NM_008253	ENSMUSG00000015217	Hmgb3	Hmg2a|Hmg4	high mobility group box 3	protein-coding	0.135000	0.716418	
mm_136314.1	chr16	91728627	91728827	-	1	NA	NA	NA	75	NM_026994	66609	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	0.060000	0.587065	
mm_72659.1	chr8	84867047	84867247	+	1	NA	NA	NA	-800	NR_106037	102466220		NR_106037	ENSMUSG00000098331	Mir7069	Gm27777|mmu-mir-7069	microRNA 7069	ncRNA	0.005000	0.527363	
mm_113497.1	chr13	37418678	37418878	+	1	NA	NA	NA	73433	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.005000	0.432836	
mm_58672.1	chr7	7298968	7299168	+	1	NA	NA	NA	177	NR_049193	100885832		NR_049193	ENSMUSG00000093599	Mir5620	Gm23572|mir-5620|mmu-mir-5620	microRNA 5620	ncRNA	0.070000	0.646766	
mm_155462.1	chrX	73521004	73521204	+	1	NA	NA	NA	18018	NM_177236	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.005000	0.527363	
mm_63964.1	chr7	139944425	139944625	+	1	NA	NA	NA	669	NM_009482	22286	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	0.075000	0.616915	
mm_42330.1	chr5	114902549	114902749	+	1	NA	NA	NA	5715	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.000000	0.442786	
mm_169710.1	chr15	75909181	75909381	-	1	NA	NA	NA	63	NM_001285433	66656	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0.095000	0.696517	
mm_55726.1	chr6	75298042	75298242	-	1	NA	NA	NA	-1827121	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.035000	0.462687	
mm_104895.1	chr11	99598003	99598203	-	1	NA	NA	NA	3	NM_029351	75586	Mm.75707	NM_029351	ENSMUSG00000049809	Krtap9-3	2310040M23Rik	keratin associated protein 9-3	protein-coding	0.010000	0.467662	-36(GATTATAAAAGG,-,0.00)
mm_124945.1	chr15	12349855	12350055	+	1	NA	NA	NA	28459	NM_025673	66629	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.015000	0.447761	
mm_117279.1	chr13	65112899	65113099	-	1	NA	NA	NA	-17	NM_133680	66631	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	0.065000	0.582090	
mm_20366.1	chr2	128405165	128405365	-	1	NA	NA	NA	24086	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.010000	0.383085	
mm_160275.1	chr7	119895492	119895692	-	1	NA	NA	NA	-134	NM_173408	233805	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0.080000	0.646766	
mm_138685.1	chr17	35919163	35919363	+	1	NA	NA	NA	1374	NR_035445	100316810		NR_035445	ENSMUSG00000084751	Mir1894	Mirn1894|mmu-mir-1894	microRNA 1894	ncRNA	0.010000	0.393035	
mm_36477.1	chr4	82859443	82859643	-	1	NA	NA	NA	118	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0.170000	0.805970	
mm_163894.1	chr14	27348278	27348478	+	1	NA	NA	NA	12341	NM_001289687	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.005000	0.497512	
mm_40893.1	chr5	75152242	75152442	+	1	NA	NA	NA	91	NM_001347718	18595	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.030000	0.427861	
mm_57115.1	chr6	122596421	122596621	-	1	NA	NA	NA	5923	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.015000	0.402985	
mm_137839.1	chr17	30983984	30984184	+	1	NA	NA	NA	29401	NM_177465	52020	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0.030000	0.557214	
mm_127658.1	chr15	102498673	102498873	+	1	NA	NA	NA	18231	NM_001163643	26404	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0.005000	0.288557	
mm_54695.1	chr6	39557589	39557789	-	1	NA	NA	NA	145	NM_172477	209773	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.175000	0.830846	
mm_145022.1	chr18	38993099	38993299	+	1	NA	NA	NA	54	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.110000	0.721393	
mm_143985.1	chr17	87613399	87613599	-	1	NA	NA	NA	-22480	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.035000	0.547264	
mm_112954.1	chr13	21179356	21179556	+	1	NA	NA	NA	-475	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.040000	0.606965	
mm_98739.1	chr11	96365646	96365846	+	1	NA	NA	NA	-12	NM_008266	15407	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0.035000	0.621891	
mm_62840.1	chr7	114088133	114088333	+	1	NA	NA	NA	29548	NM_025846	66922	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.015000	0.507463	
mm_75537.1	chr8	57320757	57320957	-	1	NA	NA	NA	2	NR_110474	102636514		NR_110474	ENSMUSG00000100510	Uph	-	upperhand	ncRNA	0.065000	0.502488	
mm_39202.1	chr4	156030656	156030856	-	1	NA	NA	NA	4414	NM_021985	21936	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	0.025000	0.547264	
mm_134259.1	chr16	13739112	13739312	-	1	NA	NA	NA	-8728	NM_011987	26565	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	0.000000	0.477612	
mm_69034.1	chr7	126798411	126798611	-	1	NA	NA	NA	667	NM_001177307	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.025000	0.472637	
mm_14252.1	chr2	128128039	128128239	+	1	NA	NA	NA	564	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.075000	0.611940	
mm_76674.1	chr8	93810143	93810343	-	1	NA	NA	NA	-595	NM_010308	14681	Mm.251445	NM_010308	ENSMUSG00000031748	Gnao1	AW050213|Galphao|Gnao|alphaO	guanine nucleotide binding protein, alpha O	protein-coding	0.125000	0.810945	
mm_12577.1	chr2	73274187	73274387	+	1	NA	NA	NA	2361	NM_001005343	381373	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0.110000	0.631841	
mm_25048.1	chr3	98308933	98309133	+	1	NA	NA	NA	28602	NM_008256	15360	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.015000	0.512438	
mm_80116.1	chr9	70542796	70542996	+	1	NA	NA	NA	26	NM_025690	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.120000	0.741294	
mm_16958.1	chr2	17391000	17391200	-	1	NA	NA	NA	-172414	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	0.010000	0.472637	
mm_142777.1	chr17	50094183	50094383	-	1	NA	NA	NA	96214	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.015000	0.462687	
mm_106463.1	chr11	120047069	120047269	-	1	NA	NA	NA	-24	NM_007377	11302	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0.115000	0.761194	
mm_126216.1	chr15	78911402	78911602	+	1	NA	NA	NA	-2417	NM_020271	57028	Mm.263169	NM_020271	ENSMUSG00000022436	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	0.040000	0.671642	
mm_76149.1	chr8	82353315	82353515	-	1	NA	NA	NA	49171	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.005000	0.437811	
mm_40730.1	chr5	66106123	66106323	+	1	NA	NA	NA	-8044	NM_139065	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.025000	0.497512	
mm_162478.1	chr1	133801393	133801593	+	1	NA	NA	NA	-47746	NM_213616	381290	Mm.188617	NM_213616	ENSMUSG00000026463	Atp2b4	Pmca4	ATPase, Ca++ transporting, plasma membrane 4	protein-coding	0.010000	0.552239	
mm_151442.1	chr19	57452838	57453038	+	1	NA	NA	NA	32	NM_028115	72133	Mm.258404	NM_028115	ENSMUSG00000025086	Trub1	2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870	TruB pseudouridine (psi) synthase family member 1	protein-coding	0.025000	0.567164	
mm_165556.1	chr3	14808292	14808492	-	1	NA	NA	NA	-27	NM_009799	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.005000	0.497512	-7(TTGTATATAAGC,-,0.00)
mm_124305.1	chr14	103098863	103099063	-	1	NA	NA	NA	41	NM_001347601	50789	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.160000	0.800995	
mm_88118.1	chr10	69213155	69213355	+	1	NA	NA	NA	61	NM_001252638	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.165000	0.820896	
mm_65635.1	chr7	27674473	27674673	-	1	NA	NA	NA	8	NM_001290528	269881	Mm.389883	NM_001081292	ENSMUSG00000040390	Map3k10	BC028668|BC046514|MST|Mlk2	mitogen-activated protein kinase kinase kinase 10	protein-coding	0.110000	0.726368	
mm_163926.1	chr14	47097650	47097850	+	1	NA	NA	NA	18411	NR_126579	100038654		NR_126579	ENSMUSG00000072589	Gm10371	ENSMUSG00000072589	predicted gene 10371	ncRNA	0.020000	0.338308	
mm_6159.1	chr1	65048490	65048690	-	1	NA	NA	NA	2573	NM_007777	12968	Mm.258170	NM_007777	ENSMUSG00000070870	Cryge	Cryg-2|Cryg-6|DGcry-2|Elo	crystallin, gamma E	protein-coding	0.015000	0.422886	
mm_44626.1	chr5	26492229	26492429	-	1	NA	NA	NA	985	NR_029445	75942	Mm.50087	NR_029445	ENSMUSG00000029044	4930584F24Rik	1700001J09Rik|4930522C06Rik	RIKEN cDNA 4930584F24 gene	ncRNA	0.000000	0.482587	
mm_86996.1	chr10	26695210	26695410	+	1	NA	NA	NA	-20659	NR_033633	667572	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.020000	0.562189	
mm_162674.1	chr10	7473520	7473720	-	1	NA	NA	NA	-143	NM_029975	77777	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	0.040000	0.601990	
mm_12619.1	chr2	74695201	74695401	+	1	NA	NA	NA	-2462	NM_013555	15438	Mm.26544	NM_013555	ENSMUSG00000043342	Hoxd9	Hox-4.4|Hox-5.2	homeobox D9	protein-coding	0.015000	0.477612	
mm_116286.1	chr13	34994026	34994226	-	1	NA	NA	NA	18	NM_011868	23986	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0.060000	0.656716	
mm_11783.1	chr2	39295882	39296082	+	1	NA	NA	NA	-69644	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding	0.010000	0.442786	-32(AGGTATAAAAAG,-,0.00)
mm_146816.1	chr18	20943685	20943885	-	1	NA	NA	NA	-840	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.010000	0.462687	
mm_71932.1	chr8	70282968	70283168	+	1	NA	NA	NA	69	NM_001146153	26558	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	0.150000	0.776119	
mm_47800.1	chr5	132541912	132542112	-	1	NA	NA	NA	331	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.055000	0.527363	
mm_65536.1	chr7	25816467	25816667	-	1	NA	NA	NA	-37	NM_028775	74134	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0.055000	0.656716	
mm_140663.1	chr17	12909774	12909974	-	1	NA	NA	NA	126	NM_001034866	240023	Mm.242315	NM_001034866	ENSMUSG00000073460	Pnldc1	Gm313	poly(A)-specific ribonuclease (PARN)-like domain containing 1	protein-coding	0.090000	0.656716	
mm_7928.1	chr1	133906857	133907057	-	1	NA	NA	NA	216	NM_054076	269120	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	0.015000	0.567164	16(GCATCTAAAAGG,-,0.00)
mm_12739.1	chr2	78923392	78923592	+	1	NA	NA	NA	54445	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.015000	0.363184	
mm_127186.1	chr15	99029790	99029990	+	1	NA	NA	NA	-1	NM_009448	22146	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.045000	0.626866	
mm_19105.1	chr2	79454856	79455056	-	1	NA	NA	NA	1680	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.035000	0.552239	
mm_28382.1	chr3	90000438	90000638	-	1	NA	NA	NA	1778	NR_045749	100503469	Mm.440636	NR_045749	ENSMUSG00000105552	Gm19710	-	predicted gene, 19710	ncRNA	0.000000	0.497512	
mm_171170.1	chr3	28852014	28852214	-	1	NA	NA	NA	-40503	NM_001033479	385263	Mm.60893	NM_001033479	ENSMUSG00000074655	Gm1527	Gm1136	predicted gene 1527	protein-coding	0.030000	0.492537	-31(CTTTAAATACCC,+,0.00)
mm_1019.1	chr1	58743449	58743649	+	1	NA	NA	NA	12997	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.015000	0.398010	
mm_91194.1	chr10	21146390	21146590	-	1	NA	NA	NA	14494	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.005000	0.477612	
mm_137483.1	chr17	26933243	26933443	+	1	NA	NA	NA	216	NR_126158	21652	Mm.258953	NM_009343	ENSMUSG00000024193	Phf1	AW557215|D17Ertd455e|Pcl1|Phf2|Tctex3	PHD finger protein 1	protein-coding	0.055000	0.721393	
mm_89267.1	chr10	87860052	87860252	+	1	NA	NA	NA	-959	NM_001111274	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.040000	0.552239	
mm_8927.1	chr1	164020900	164021100	-	1	NA	NA	NA	26055	NM_027279	69962	Mm.27284	NM_027279	ENSMUSG00000041396	Mettl18	2810422O20Rik|C78571	methyltransferase like 18	protein-coding	0.000000	0.482587	
mm_113432.1	chr13	34739522	34739722	+	1	NA	NA	NA	-20	NM_138746	108161	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.000000	0.482587	
mm_94818.1	chr11	23255848	23256048	+	1	NA	NA	NA	-93	NM_001035226	103573	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.090000	0.651741	
mm_75028.1	chr8	31949960	31950160	-	1	NA	NA	NA	-31857	NM_178591	211323	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding	0.040000	0.487562	
mm_143512.1	chr17	72837386	72837586	-	1	NA	NA	NA	782	NM_027166	383295	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee-like 5 (Drosophila)	protein-coding	0.135000	0.746269	
mm_3290.1	chr1	136677147	136677347	+	1	NA	NA	NA	-6149	NR_045324	100503460	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.015000	0.567164	
mm_7587.1	chr1	125434683	125434883	-	1	NA	NA	NA	944	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.055000	0.567164	
mm_140212.1	chr17	83804205	83804405	+	1	NA	NA	NA	42485	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.015000	0.522388	-40(GCCTTGATAAGC,-,0.00)
mm_45023.1	chr5	38561607	38561807	-	1	NA	NA	NA	-112	NM_011715	22388	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0.165000	0.766169	-47(GACTATATATGG,-,0.00)
mm_1009.1	chr1	58726071	58726271	+	1	NA	NA	NA	-4381	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.005000	0.407960	
mm_12828.1	chr2	80617251	80617451	+	1	NA	NA	NA	137	NM_024438	68082	Mm.306818	NM_024438	ENSMUSG00000027001	Dusp19	5930436K22Rik|C79103|SKRP1|TS-DSP1	dual specificity phosphatase 19	protein-coding	0.010000	0.472637	
mm_28757.1	chr3	95855775	95855975	-	1	NA	NA	NA	7	NM_001316751	70767	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	0.150000	0.706468	
mm_127985.1	chr15	12549174	12549374	-	1	NA	NA	NA	43282	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.035000	0.527363	
mm_70777.1	chr8	22216880	22217080	+	1	NA	NA	NA	-10323	NM_001205253	56229	Mm.32067	NM_019576	ENSMUSG00000031480	Thsd1	4833423O18Rik|Tmtsp	thrombospondin, type I, domain 1	protein-coding	0.010000	0.393035	
mm_48077.1	chr5	136812440	136812640	-	1	NA	NA	NA	70567	NM_024474	140709	Mm.295020	NM_024474	ENSMUSG00000004415	Col26a1	9430032K24Rik|BC002218|Col26a|Emid2|Emu2	collagen, type XXVI, alpha 1	protein-coding	0.000000	0.323383	
mm_171310.1	chr3	94604724	94604924	-	1	NA	NA	NA	-22108	NM_029721	76742	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.050000	0.477612	
mm_140940.1	chr17	24455148	24455348	-	1	NA	NA	NA	144	NM_001301784	13560	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	0.140000	0.706468	
mm_21544.1	chr2	164054078	164054278	-	1	NA	NA	NA	16924	NM_025996	67145	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	0.015000	0.407960	
mm_95143.1	chr11	35459433	35459633	+	1	NA	NA	NA	-157283	NR_029799	723924		NR_029799	ENSMUSG00000065583	Mir218-2	Mirn218-2|mir-218-2	microRNA 218-2	ncRNA	0.020000	0.328358	
mm_111402.1	chr12	91029987	91030187	-	1	NA	NA	NA	-15761	NR_045858	71349	Mm.442093	NR_045858		5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	0.005000	0.353234	
mm_64505.1	chr7	143476139	143476339	+	1	NA	NA	NA	1123	NM_001042760	18400	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0.010000	0.577114	
mm_46131.1	chr5	92675042	92675242	-	1	NA	NA	NA	-15	NM_177230	320696	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	0.120000	0.701493	
mm_72451.1	chr8	83165945	83166145	+	1	NA	NA	NA	693	NM_027758	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.115000	0.721393	
mm_51867.1	chr6	90550719	90550919	+	1	NA	NA	NA	-29	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.030000	0.616915	
mm_139409.1	chr17	52602190	52602390	+	1	NA	NA	NA	-419	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.050000	0.636816	
mm_91576.1	chr10	40129121	40129321	-	1	NA	NA	NA	13033	NM_028247	72472	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.000000	0.402985	
mm_49405.1	chr6	28427822	28428022	+	1	NA	NA	NA	21	NM_019569	56223	Mm.31708	NM_019569	ENSMUSG00000029707	Fscn3	-	fascin actin-bundling protein 3	protein-coding	0.020000	0.572139	-98(ACCTTTATAGTC,+,0.00)
mm_82454.1	chr9	15619522	15619722	-	1	NA	NA	NA	-235	NR_040746	78025	Mm.55983	NR_040746	ENSMUSG00000111299	4930540M03Rik	-	RIKEN cDNA 4930540M03 gene	ncRNA	0.000000	0.467662	
mm_49916.1	chr6	39044305	39044505	+	1	NA	NA	NA	23181	NR_040523	69986	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.010000	0.517413	
mm_166500.1	chr6	3993934	3994134	+	1	NA	NA	NA	22	NM_010314	14699	Mm.95398	NM_010314	ENSMUSG00000029663	Gngt1	G(y)1|Gng1	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1	protein-coding	0.000000	0.442786	-57(GCTTTAAAATCC,+,0.00)
mm_161079.1	chr12	82340784	82340984	+	1	NA	NA	NA	29535	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.010000	0.407960	-20(CCTTTTAAATGA,+,0.00)
mm_84083.1	chr9	58202212	58202412	-	1	NA	NA	NA	-27	NM_001161536	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.050000	0.562189	
mm_173012.1	chrM	470	670	+	1	NA	NA	NA	NA	NA									0.020000	0.398010	
mm_70057.1	chr7	142651299	142651499	-	1	NA	NA	NA	3597	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.025000	0.636816	
mm_56869.1	chr6	118562110	118562310	-	1	NA	NA	NA	46	NM_001081112	232339	Mm.276116	NM_001081112	ENSMUSG00000007827	Ankrd26	5730521P14Rik|BC008111|mKIAA1074	ankyrin repeat domain 26	protein-coding	0.085000	0.601990	3(TGCTTTAAAAAC,-,0.00),4(GCTTTAAAAACC,+,0.00)
mm_19802.1	chr2	110305531	110305731	-	1	NA	NA	NA	94	NM_130452	170442	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	0.005000	0.482587	
mm_73852.1	chr8	117702095	117702295	+	1	NA	NA	NA	249	NM_008290	15486	Mm.276466	NM_008290	ENSMUSG00000031844	Hsd17b2	AI194836|AI194967|AI255511	hydroxysteroid (17-beta) dehydrogenase 2	protein-coding	0.025000	0.562189	
mm_144618.1	chr18	32837221	32837421	+	1	NA	NA	NA	-34	NR_045381	75795	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	0.110000	0.661692	
mm_116307.1	chr13	36734337	36734537	-	1	NA	NA	NA	40	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.030000	0.562189	
mm_59200.1	chr7	24507031	24507231	+	1	NA	NA	NA	44	NR_110958	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.105000	0.651741	-32(CTATTTATAAGG,-,0.00)
mm_154445.1	chrM	1433	1633	-	1	NA	NA	NA	NA	NA									0.005000	0.313433	-83(GCTTTTAGGCCT,+,0.00),-40(CACTATTAAAGG,-,0.00)
mm_78880.1	chr9	44499043	44499243	+	1	NA	NA	NA	7	NM_030256	80288	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.075000	0.681592	
mm_151174.1	chr19	53310424	53310624	+	1	NA	NA	NA	18	NM_001008542	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.080000	0.641791	
mm_99882.1	chr11	109426281	109426481	+	1	NA	NA	NA	161	NM_001252193	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.045000	0.552239	
mm_75101.1	chr8	34136566	34136766	-	1	NA	NA	NA	10073	NM_026609	68192	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	0.015000	0.393035	
mm_59220.1	chr7	24608286	24608486	+	1	NA	NA	NA	-2942	NM_001102613	232970	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|ENSMUSG00000061511|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	0.020000	0.542289	
mm_149513.1	chr19	12010429	12010629	+	1	NA	NA	NA	26211	NM_146680	258675	Mm.271517	NM_146680	ENSMUSG00000067529	Olfr1423	MOR239-3	olfactory receptor 1423	protein-coding	0.065000	0.621891	
mm_138019.1	chr17	33910154	33910354	+	1	NA	NA	NA	653	NM_001199733	13163	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0.040000	0.547264	
mm_89780.1	chr10	101681542	101681742	+	1	NA	NA	NA	155	NM_001205098	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.010000	0.422886	
mm_104321.1	chr11	93955815	93956015	-	1	NA	NA	NA	-132	NM_001077529	18103	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	0.100000	0.666667	
mm_158293.1	chrX	112698577	112698777	-	1	NA	NA	NA	-26	NM_181579	69693	Mm.34964	NM_181579	ENSMUSG00000034607	Pof1b	2310066B14Rik	premature ovarian failure 1B	protein-coding	0.020000	0.532338	
mm_8744.1	chr1	160251317	160251517	-	1	NA	NA	NA	-38525	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0.015000	0.407960	
mm_84863.1	chr9	78585061	78585261	-	1	NA	NA	NA	2884	NM_172773	235504	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.035000	0.452736	
mm_24226.1	chr3	88716819	88717019	+	1	NA	NA	NA	65	NM_001163310	19769	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	0.065000	0.701493	
mm_165775.1	chr3	129209920	129210120	+	1	NA	NA	NA	-3912	NM_001042502	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.015000	0.497512	-74(CCCTTTATGACC,+,0.00)
mm_133834.1	chr16	95924213	95924413	+	1	NA	NA	NA	4764	NR_040484	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.020000	0.537313	-34(CACTATAAAAGA,-,0.00)
mm_161211.1	chr13	63014989	63015189	+	1	NA	NA	NA	50196	NM_001289924	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.005000	0.417910	
mm_111055.1	chr12	80110061	80110261	-	1	NA	NA	NA	2852	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.095000	0.621891	
mm_107716.1	chr12	56253100	56253300	+	1	NA	NA	NA	-43	NR_045048	100503961	Mm.136732	NR_045048		Gm19990	-	predicted gene, 19990	ncRNA	0.015000	0.437811	-78(CCTTTTATATGG,+,0.00)
mm_151159.1	chr19	53194191	53194391	+	1	NA	NA	NA	50294	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.005000	0.447761	
mm_119622.1	chr14	51128945	51129145	+	1	NA	NA	NA	-23	NM_030098	78416	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	0.010000	0.462687	
mm_114797.1	chr13	89739386	89739586	+	1	NA	NA	NA	3026	NM_001081249	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.080000	0.686567	
mm_20272.1	chr2	126797718	126797918	-	1	NA	NA	NA	-14358	NM_029163	75083	Mm.389373	NM_029163	ENSMUSG00000027364	Usp50	1700086G18Rik|4930511O11Rik	ubiquitin specific peptidase 50	protein-coding	0.010000	0.437811	
mm_26885.1	chr3	18096925	18097125	-	1	NA	NA	NA	42700	NM_021560	59058	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0.005000	0.308458	
mm_55712.1	chr6	72960636	72960836	-	1	NA	NA	NA	-1988	NM_001190327	19240	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.005000	0.472637	-49(TCTTTTATGGCC,+,0.00)
mm_8770.1	chr1	160878562	160878762	-	1	NA	NA	NA	-27749	NM_001024952	381305	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	0.015000	0.517413	-32(GGCTCTTAAAGC,-,0.00),-31(GCTCTTAAAGCC,+,0.00)
mm_145934.1	chr18	67287725	67287925	+	1	NA	NA	NA	-1398	NM_053261	114663	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0.010000	0.577114	
mm_171245.1	chr3	75655079	75655279	-	1	NA	NA	NA	552	NR_040539	69193	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	0.015000	0.422886	
mm_121448.1	chr14	120430638	120430838	+	1	NA	NA	NA	-47723	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.015000	0.308458	
mm_144278.1	chr18	11722558	11722758	+	1	NA	NA	NA	65309	NM_001081223	225182	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8	protein-coding	0.000000	0.412935	
mm_156764.1	chrX	160529842	160530042	+	1	NA	NA	NA	27508	NM_001177878	110094	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	0.010000	0.348259	39(CTGCATATAAAG,-,0.00)
mm_66969.1	chr7	63212423	63212623	-	1	NA	NA	NA	3	NM_007390	11441	Mm.113464	NM_007390	ENSMUSG00000030525	Chrna7	Acra7|alpha7|nAchR	cholinergic receptor, nicotinic, alpha polypeptide 7	protein-coding	0.175000	0.791045	-32(GCGCTTTAAAGG,-,0.00),-31(CGCTTTAAAGGC,-,0.00),-30(GCTTTAAAGGCG,+,0.00)
mm_30870.1	chr4	32165022	32165222	+	1	NA	NA	NA	201015	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.010000	0.477612	2(GACTATAAGAAG,-,0.00)
mm_169469.1	chr14	67008783	67008983	-	1	NA	NA	NA	-6	NM_009761	12177	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0.085000	0.646766	
mm_44139.1	chr5	150152787	150152987	+	1	NA	NA	NA	-107043	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.015000	0.447761	
mm_148044.1	chr18	70472375	70472575	-	1	NA	NA	NA	5	NM_172967	269033	Mm.87470	NM_172967	ENSMUSG00000044906	4930503L19Rik	9930107F24|BB148262|Lars|Las2	RIKEN cDNA 4930503L19 gene	protein-coding	0.120000	0.676617	
mm_150264.1	chr19	34217143	34217343	+	1	NA	NA	NA	24973	NM_029682	76630	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.015000	0.487562	
mm_93219.1	chr10	95145441	95145641	-	1	NA	NA	NA	284	NR_131146	628062		NR_131146		Gm29684	-	predicted gene, 29684	ncRNA	0.010000	0.517413	
mm_99546.1	chr11	103347080	103347280	+	1	NA	NA	NA	2427	NR_045346	653030	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648|OTTMUSG00000003073	Rho GTPase activating protein 27, opposite strand 3	ncRNA	0.005000	0.492537	66(TGCTTTATAAAC,-,0.00)
mm_56505.1	chr6	99339281	99339481	-	1	NA	NA	NA	-72866	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.020000	0.517413	
mm_170629.1	chr1	9782238	9782438	-	1	NA	NA	NA	-15792	NM_133220	170755	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.015000	0.507463	-29(GATTTTAAAAAG,-,0.00)
mm_109523.1	chr12	111535944	111536144	+	1	NA	NA	NA	-2057	NM_178041	217869	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.010000	0.457711	-33(GGATATTAAAGG,-,0.00)
mm_152821.1	chr19	23136190	23136390	-	1	NA	NA	NA	-4936	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.070000	0.577114	
mm_44617.1	chr5	25529491	25529691	-	1	NA	NA	NA	-427	NR_027388	73571	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0.075000	0.661692	
mm_6372.1	chr1	72536892	72537092	-	1	NA	NA	NA	-428	NM_001045533	381270	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	0.060000	0.577114	
mm_20896.1	chr2	148875510	148875710	-	1	NA	NA	NA	-98	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.045000	0.636816	-32(CTCTTTAAGAGG,-,0.00)
mm_115009.1	chr13	98354142	98354342	+	1	NA	NA	NA	-3	NM_008242	15229	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	0.065000	0.636816	
mm_21121.1	chr2	153632618	153632818	-	1	NA	NA	NA	63	NM_001195390	99311	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	0.135000	0.721393	
mm_26793.1	chr3	9799264	9799464	-	1	NA	NA	NA	34315	NM_053182	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.005000	0.427861	79(GTTTTTAAAGTA,+,0.00)
mm_18793.1	chr2	73808896	73809096	-	1	NA	NA	NA	-33650	NM_001113246	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	0.015000	0.487562	-37(GTGTATAAAAAG,-,0.00)
mm_107710.1	chr12	55599327	55599527	+	1	NA	NA	NA	510	NM_020287	56856	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	0.115000	0.741294	
mm_94461.1	chr11	6416237	6416437	+	1	NA	NA	NA	467	NM_008907	268373	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	0.100000	0.731343	
mm_135314.1	chr16	38713233	38713433	-	1	NA	NA	NA	-298	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.085000	0.651741	
mm_98685.1	chr11	96292381	96292581	+	1	NA	NA	NA	5835	NM_010460	15415	Mm.390366	NM_010460	ENSMUSG00000038721	Hoxb7	AI325018|Hox-2.3	homeobox B7	protein-coding	0.055000	0.482587	
mm_97364.1	chr11	77507221	77507421	+	1	NA	NA	NA	5952	NM_001024920	216964	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	0.010000	0.572139	
mm_57134.1	chr6	122606450	122606650	-	1	NA	NA	NA	3537	NM_008108	14562	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0.020000	0.502488	
mm_167452.1	chr8	122903030	122903230	+	1	NA	NA	NA	54756	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.020000	0.437811	
mm_107703.1	chr12	55467848	55468048	+	1	NA	NA	NA	24699	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.035000	0.547264	
mm_162118.1	chrX	57043048	57043248	+	1	NA	NA	NA	74	NM_009766	12209	Mm.10687	NM_009766	ENSMUSG00000031130	Brs3	BRS-3	bombesin-like receptor 3	protein-coding	0.025000	0.502488	
mm_171426.1	chr4	134164457	134164657	+	1	NA	NA	NA	22528	NM_144527	70012	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	0.070000	0.557214	-30(CCCTATAAAAAG,-,0.00)
mm_130514.1	chr15	98863849	98864049	-	1	NA	NA	NA	7256	NM_001033276	381022	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.025000	0.606965	
mm_7710.1	chr1	130462395	130462595	-	1	NA	NA	NA	249	NM_010016	13136	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0.070000	0.671642	
mm_47551.1	chr5	124354447	124354647	-	1	NA	NA	NA	81	NM_013812	13445	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0.170000	0.771144	
mm_41581.1	chr5	93173579	93173779	+	1	NA	NA	NA	32816	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.005000	0.363184	-6(CTTTTTAAAGCT,+,0.00)
mm_137686.1	chr17	28858432	28858632	+	1	NA	NA	NA	121	NM_001034885	433091	Mm.328925	NM_001034885	ENSMUSG00000043286	Pnpla1	-	patatin-like phospholipase domain containing 1	protein-coding	0.040000	0.621891	
mm_7391.1	chr1	111864799	111864999	-	1	NA	NA	NA	19	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0.095000	0.671642	
mm_88594.1	chr10	79777171	79777371	+	1	NA	NA	NA	-3	NM_031380	83554	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0.115000	0.741294	-29(GCTTTTATAGGC,+,0.00)
mm_36345.1	chr4	73771028	73771228	-	1	NA	NA	NA	19474	NM_001017427	242505	Mm.389582	NM_001017427	ENSMUSG00000043003	Rasef	BC030882|RAB45	RAS and EF hand domain containing	protein-coding	0.005000	0.402985	
mm_53077.1	chr6	124935533	124935733	+	1	NA	NA	NA	4245	NM_001170341	30853	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.010000	0.512438	
mm_91228.1	chr10	22299364	22299564	-	1	NA	NA	NA	-7256	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.010000	0.393035	
mm_107109.1	chr12	17881856	17882056	+	1	NA	NA	NA	191142	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.125000	0.721393	
mm_145978.1	chr18	67972245	67972445	+	1	NA	NA	NA	39088	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.010000	0.447761	29(TTTTTAAGAGGC,+,0.00)
mm_134095.1	chr16	9919662	9919862	-	1	NA	NA	NA	72771	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.000000	0.457711	
mm_131136.1	chr16	6348413	6348613	+	1	NA	NA	NA	372926	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA	0.050000	0.532338	
mm_68105.1	chr7	102018073	102018273	-	1	NA	NA	NA	-18	NM_010531	16068	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.020000	0.527363	
mm_4601.1	chr1	178405961	178406161	+	1	NA	NA	NA	180	NM_026626	68226	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.100000	0.716418	
mm_111283.1	chr12	85373365	85373565	-	1	NA	NA	NA	1252	NM_026775	68581	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.010000	0.343284	
mm_35092.1	chr4	8456458	8456658	-	1	NA	NA	NA	-79086	NM_021518	59021	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0.010000	0.442786	
mm_85492.1	chr9	106135917	106136117	-	1	NA	NA	NA	-18107	NR_029549	387153		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	0.010000	0.388060	
mm_32431.1	chr4	107179758	107179958	+	1	NA	NA	NA	1228	NM_029565	56374	Mm.291192	NM_029565	ENSMUSG00000028618	Tmem59	1110001M20Rik|3110046P06Rik|AI256529|D4Ertd20e|MTDCF1|ORF18	transmembrane protein 59	protein-coding	0.015000	0.427861	
mm_50927.1	chr6	57640397	57640597	+	1	NA	NA	NA	51581	NM_025574	66459	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	0.005000	0.358209	
mm_114183.1	chr13	55647529	55647729	+	1	NA	NA	NA	12630	NM_001282055	212880	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	0.030000	0.383085	
mm_58041.1	chr6	136825995	136826195	-	1	NA	NA	NA	2121	NM_021714	60321	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	0.015000	0.343284	
mm_22301.1	chr2	180334624	180334824	-	1	NA	NA	NA	-45	NM_008093	14464	Mm.388880	NM_008093	ENSMUSG00000015627	Gata5	-	GATA binding protein 5	protein-coding	0.090000	0.706468	
mm_106424.1	chr11	119299919	119300119	-	1	NA	NA	NA	24	NM_138669	192170	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	0.145000	0.676617	
mm_61401.1	chr7	73375748	73375948	+	1	NA	NA	NA	-74	NR_040324	319783	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.100000	0.746269	
mm_9159.1	chr1	170959995	170960195	-	1	NA	NA	NA	15976	NM_001077189	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.010000	0.497512	
mm_96457.1	chr11	67586514	67586714	+	1	NA	NA	NA	114	NM_001109657	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.015000	0.552239	
mm_36086.1	chr4	58206679	58206879	-	1	NA	NA	NA	-183	NM_022814	64817	Mm.261024	NM_022814	ENSMUSG00000028369	Svep1	1110021D17Rik|4833413O10Rik|AA387071|D430029O09Rik|Polydom	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	protein-coding	0.005000	0.527363	
mm_61186.1	chr7	62416382	62416582	+	1	NA	NA	NA	3657	NM_011746	22652	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	0.000000	0.437811	37(ATGCTTAAAAGC,-,0.00)
mm_37624.1	chr4	127329027	127329227	-	1	NA	NA	NA	-2	NM_008126	14620	Mm.90003	NM_008126	ENSMUSG00000042367	Gjb3	Cnx31|Cx31|D4Wsu144e|Gjb-3	gap junction protein, beta 3	protein-coding	0.020000	0.522388	
mm_28073.1	chr3	84304643	84304843	-	1	NA	NA	NA	32	NM_001271726	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.065000	0.606965	
mm_25043.1	chr3	98291192	98291392	+	1	NA	NA	NA	10861	NM_008256	15360	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.020000	0.517413	
mm_47504.1	chr5	124035644	124035844	-	1	NA	NA	NA	-3484	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.030000	0.432836	
mm_111896.1	chr12	108680352	108680552	-	1	NA	NA	NA	21832	NR_029771	723909		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.025000	0.398010	-61(GGGTTTAAAGGC,-,0.00)
mm_91947.1	chr10	60938007	60938207	-	1	NA	NA	NA	25	NR_033616	73616	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	0.010000	0.512438	
mm_85884.1	chr9	111042217	111042417	-	1	NA	NA	NA	14927	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.020000	0.487562	
mm_30244.1	chr3	146500005	146500205	-	1	NA	NA	NA	269	NM_010318	14707	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	0.145000	0.781095	
mm_134622.1	chr16	21649940	21650140	-	1	NA	NA	NA	44625	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.000000	0.348259	
mm_78431.1	chr9	31905926	31906126	+	1	NA	NA	NA	7259	NM_013800	12023	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.025000	0.492537	
mm_38847.1	chr4	149247222	149247422	-	1	NA	NA	NA	60376	NM_207682	16561	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0.015000	0.497512	
mm_7424.1	chr1	119821214	119821414	-	1	NA	NA	NA	15757	NM_019933	19258	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	0.000000	0.388060	
mm_27647.1	chr3	63899321	63899521	-	1	NA	NA	NA	29964	NM_177856	329659	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding	0.015000	0.552239	
mm_52373.1	chr6	113077295	113077495	+	1	NA	NA	NA	-151	NR_027008	14910	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	0.145000	0.786070	
mm_140116.1	chr17	78916447	78916647	+	1	NA	NA	NA	48	NM_001177402	68554	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	0.095000	0.661692	
mm_100684.1	chr11	3502909	3503109	-	1	NA	NA	NA	1812	NM_172439	170835	Mm.24313	NM_172439	ENSMUSG00000034570	Inpp5j	Pib5pa|Pipp	inositol polyphosphate 5-phosphatase J	protein-coding	0.040000	0.611940	
mm_164184.1	chr15	76280894	76281094	-	1	NA	NA	NA	-11155	NR_045747	100038659	Mm.448549	NR_045747		Mirt2	ENSMUSG00000075583|Gm10872|Gm24562	myocardial infraction associated transcript 2	ncRNA	0.010000	0.482587	
mm_140990.1	chr17	24850000	24850200	-	1	NA	NA	NA	202	NM_023480	68636	Mm.347964	NM_023480	ENSMUSG00000045316	Fahd1	1110025H10Rik|AV002085	fumarylacetoacetate hydrolase domain containing 1	protein-coding	0.080000	0.626866	
mm_27028.1	chr3	26153340	26153540	-	1	NA	NA	NA	-133	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.030000	0.412935	
mm_155427.1	chrX	73492669	73492869	+	1	NA	NA	NA	9168	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.010000	0.527363	
mm_90012.1	chr10	115314943	115315143	+	1	NA	NA	NA	548	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.050000	0.636816	
mm_135024.1	chr16	32520461	32520661	-	1	NA	NA	NA	24280	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.035000	0.577114	
mm_78860.1	chr9	44397050	44397250	+	1	NA	NA	NA	55	NM_001293630	14385	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0.075000	0.686567	
mm_62737.1	chr7	111028644	111028844	+	1	NA	NA	NA	-207	NM_009431	22083	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0.085000	0.631841	
mm_60251.1	chr7	43776182	43776382	+	1	NA	NA	NA	-47	NM_019974	56538	Mm.154276	NM_019974	ENSMUSG00000067616	Klk11	2310015I08Rik|Prss20|TLSP	kallikrein related-peptidase 11	protein-coding	0.005000	0.552239	
mm_662.1	chr1	40441191	40441391	+	1	NA	NA	NA	1662	NM_010743	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.015000	0.383085	
mm_96470.1	chr11	67652387	67652587	+	1	NA	NA	NA	-42839	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.025000	0.572139	
mm_123855.1	chr14	70994318	70994518	-	1	NA	NA	NA	104311	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.030000	0.507463	
mm_47503.1	chr5	124035602	124035802	-	1	NA	NA	NA	-3442	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.035000	0.477612	
mm_59408.1	chr7	27119657	27119857	+	1	NA	NA	NA	-198	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.010000	0.517413	
mm_59014.1	chr7	19242030	19242230	+	1	NA	NA	NA	13741	NM_207525	403187	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.005000	0.407960	
mm_165607.1	chr3	51636642	51636842	+	1	NA	NA	NA	-24437	NM_174995	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.055000	0.437811	
mm_33873.1	chr4	136143724	136143924	+	1	NA	NA	NA	2	NM_008321	15903	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.070000	0.606965	-36(GACTCTATAAGA,-,0.00)
mm_13589.1	chr2	112492800	112493000	+	1	NA	NA	NA	-64	NM_028844	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.115000	0.636816	
mm_52888.1	chr6	122577699	122577899	+	1	NA	NA	NA	23990	NM_009645	11628	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.010000	0.333333	
mm_11894.1	chr2	49795576	49795776	+	1	NA	NA	NA	7990	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.005000	0.427861	-82(GCTTTTATAGAA,+,0.00)
mm_92442.1	chr10	77515697	77515897	-	1	NA	NA	NA	16	NM_133998	108707	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0.115000	0.671642	
mm_135776.1	chr16	56839453	56839653	-	1	NA	NA	NA	-43695	NM_172825	239853	Mm.258979	NM_172825	ENSMUSG00000022755	Adgrg7	9130020O16Rik|Gpr128	adhesion G protein-coupled receptor G7	protein-coding	0.000000	0.422886	
mm_16208.1	chr2	173063443	173063643	+	1	NA	NA	NA	41641	NM_019547	56190	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.000000	0.427861	
mm_17246.1	chr2	25627800	25628000	-	1	NA	NA	NA	74	NM_007995	14133	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	0.020000	0.557214	86(CCTTTTCAGGAC,+,0.00)
mm_129263.1	chr15	76818034	76818234	-	1	NA	NA	NA	36	NM_001168288	223666	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0.170000	0.805970	
mm_16327.1	chr2	174309918	174310118	+	1	NA	NA	NA	12159	NM_001310085	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.000000	0.378109	
mm_98649.1	chr11	96251178	96251378	+	1	NA	NA	NA	-382	NR_037977	193022	Mm.169508	NR_037977		Gm53	-	predicted gene 53	ncRNA	0.020000	0.472637	
mm_132473.1	chr16	36708227	36708427	+	1	NA	NA	NA	14349	NM_001285791	106347	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.020000	0.527363	
mm_72856.1	chr8	88428636	88428836	+	1	NA	NA	NA	-66545	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.020000	0.507463	-67(GTTTTAAGAGCC,+,0.00)
mm_138420.1	chr17	35069391	35069591	+	1	NA	NA	NA	2166	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.020000	0.562189	
mm_127540.1	chr15	102104435	102104635	+	1	NA	NA	NA	1547	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.035000	0.557214	
mm_39316.1	chr5	8065089	8065289	+	1	NA	NA	NA	8647	NM_001080974	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.000000	0.497512	
mm_24941.1	chr3	96577076	96577276	+	1	NA	NA	NA	-10375	NR_040409	100038464	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	ENSMUSG00000074398|OTTMUSG00000021867	predicted gene 15441	ncRNA	0.015000	0.492537	
mm_118268.1	chr13	112580620	112580820	-	1	NA	NA	NA	-58	NM_139299	218624	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	0.020000	0.477612	-38(TTGTATTTAAGG,-,0.00)
mm_52057.1	chr6	97232765	97232965	+	1	NA	NA	NA	19915	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.025000	0.482587	
mm_17578.1	chr2	30415300	30415500	-	1	NA	NA	NA	348	NM_007760	12908	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.090000	0.656716	
mm_13669.1	chr2	115581605	115581805	+	1	NA	NA	NA	-11	NM_207264	399568	Mm.134929	NM_207264	ENSMUSG00000040282	BC052040	-	cDNA sequence BC052040	protein-coding	0.065000	0.626866	
mm_25055.1	chr3	98599524	98599724	+	1	NA	NA	NA	-35586	NM_008294	15495	Mm.14309	NM_008294	ENSMUSG00000095143	Hsd3b4	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	protein-coding	0.025000	0.442786	-34(AACTATAAAAAG,-,0.00)
mm_54045.1	chr6	13677815	13678015	-	1	NA	NA	NA	51	NM_175312	101148	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	0.105000	0.731343	
mm_110044.1	chr12	17348296	17348496	-	1	NA	NA	NA	-97	NM_001008421	217431	Mm.27536	NM_001008421	ENSMUSG00000061458	Nol10	Gm67	nucleolar protein 10	protein-coding	0.090000	0.597015	
mm_18029.1	chr2	38643313	38643513	-	1	NA	NA	NA	493	NM_011187	19177	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0.050000	0.522388	
mm_132352.1	chr16	34120054	34120254	+	1	NA	NA	NA	-153151	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.020000	0.492537	
mm_19080.1	chr2	77946091	77946291	-	1	NA	NA	NA	165	NM_001290740	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	0.070000	0.502488	
mm_113022.1	chr13	22035739	22035939	+	1	NA	NA	NA	18	NM_175665	319184	Mm.358955	NM_175665	ENSMUSG00000062727	Hist1h2bk	-	histone cluster 1, H2bk	protein-coding	0.035000	0.502488	
mm_97205.1	chr11	75601390	75601590	+	1	NA	NA	NA	-1259	NR_110477	654359	Mm.439961	NR_110477		Gm12338	OTTMUSG00000006216	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.000000	0.467662	65(CTATCTAAAAGC,-,0.00)
mm_121632.1	chr14	8367171	8367371	-	1	NA	NA	NA	11492	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.000000	0.452736	
mm_126771.1	chr15	86067625	86067825	+	1	NA	NA	NA	8998	NM_001205353	223752	Mm.24442	NM_172611	ENSMUSG00000035900	Gramd4	9930016O13	GRAM domain containing 4	protein-coding	0.020000	0.557214	
mm_156858.1	chrX	164401999	164402199	+	1	NA	NA	NA	-17688	NM_011081	18700	Mm.3781	NM_011081	ENSMUSG00000031381	Piga	AI194334|Pig-a	phosphatidylinositol glycan anchor biosynthesis, class A	protein-coding	0.005000	0.497512	
mm_148422.1	chr19	3936969	3937169	+	1	NA	NA	NA	1883	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.010000	0.542289	
mm_117105.1	chr13	60175951	60176151	-	1	NA	NA	NA	1484	NM_008086	14451	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	0.145000	0.691542	
mm_128045.1	chr15	25413637	25413837	-	1	NA	NA	NA	27	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.135000	0.746269	
mm_164530.1	chr17	6107181	6107381	+	1	NA	NA	NA	451	NM_001103181	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.080000	0.597015	
mm_21190.1	chr2	155357376	155357576	-	1	NA	NA	NA	-52	NM_001004721	228812	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	0.070000	0.577114	
mm_145822.1	chr18	65434903	65435103	+	1	NA	NA	NA	4006	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.417910	
mm_64612.1	chr7	3502406	3502606	-	1	NA	NA	NA	46	NM_177363	245126	Mm.245747	NM_177363	ENSMUSG00000053338	Tarm1	9930022N03Rik|ENSMUSG00000053338|Gm9904|OLT-2	T cell-interacting, activating receptor on myeloid cells 1	protein-coding	0.020000	0.532338	
mm_47128.1	chr5	120139188	120139388	-	1	NA	NA	NA	-25	NR_045793	100503427	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	ENSMUSG00000072671	predicted gene 10390	ncRNA	0.015000	0.562189	
mm_55038.1	chr6	48987619	48987819	-	1	NA	NA	NA	858	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.025000	0.487562	
mm_155439.1	chrX	73494703	73494903	+	1	NA	NA	NA	-8283	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.015000	0.522388	
mm_170462.1	chr18	9269513	9269713	-	1	NA	NA	NA	13196	NM_153086	225152	Mm.119273	NM_153086	ENSMUSG00000036855	Gjd4	9430022F06Rik|Cx39	gap junction protein, delta 4	protein-coding	0.040000	0.467662	
mm_93533.1	chr10	115362123	115362323	-	1	NA	NA	NA	39	NM_133683	67226	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0.085000	0.716418	
mm_155338.1	chrX	66778677	66778877	+	1	NA	NA	NA	-1445	NR_030535	100124496		NR_030535	ENSMUSG00000094184	Mir743b	Mirn743b|mir-743b	microRNA 743b	ncRNA	0.010000	0.363184	
mm_30789.1	chr4	19575504	19575704	+	1	NA	NA	NA	538	NM_025476	66302	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	0.040000	0.522388	
mm_27776.1	chr3	73057500	73057700	-	1	NA	NA	NA	-657	NM_198864	386750	Mm.331076	NM_198864	ENSMUSG00000048304	Slitrk3	-	SLIT and NTRK-like family, member 3	protein-coding	0.070000	0.567164	
mm_69472.1	chr7	133710339	133710539	-	1	NA	NA	NA	1106	NM_025392	66165	Mm.389983	NM_025392	ENSMUSG00000030983	Bccip	1110013J05Rik|TOK-1	BRCA2 and CDKN1A interacting protein	protein-coding	0.005000	0.517413	
mm_21724.1	chr2	164657092	164657292	-	1	NA	NA	NA	1146	NM_001039501	629756	Mm.189007	NM_001039501	ENSMUSG00000070529	Wfdc10	Gm120|OTTMUSG00000016289	WAP four-disulfide core domain 10	protein-coding	0.030000	0.547264	
mm_138074.1	chr17	33949411	33949611	+	1	NA	NA	NA	1977	NM_019420	54218	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	0.015000	0.487562	
mm_11943.1	chr2	52872084	52872284	+	1	NA	NA	NA	14316	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.005000	0.363184	
mm_160887.1	chr11	69935911	69936111	+	1	NA	NA	NA	112	NM_016875	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.155000	0.796020	
mm_108713.1	chr12	87147643	87147843	+	1	NA	NA	NA	36	NM_010363	14874	Mm.29652	NM_010363	ENSMUSG00000021033	Gstz1	MAAI	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	protein-coding	0.065000	0.626866	
mm_71925.1	chr8	70234521	70234721	+	1	NA	NA	NA	-199	NM_133972	76813	Mm.383251	NM_133972	ENSMUSG00000002343	Armc6	2410153K17Rik|AW554412	armadillo repeat containing 6	protein-coding	0.120000	0.751244	
mm_51195.1	chr6	71271491	71271691	+	1	NA	NA	NA	-80	NR_106192	102465900		NR_106192	ENSMUSG00000098623	Mir8112	Gm27739|mmu-mir-8112	microRNA 8112	ncRNA	0.110000	0.721393	
mm_1349.1	chr1	66321636	66321836	+	1	NA	NA	NA	12	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.025000	0.502488	
mm_65289.1	chr7	24445536	24445736	-	1	NA	NA	NA	46	NM_199013	210145	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.015000	0.572139	
mm_56163.1	chr6	87981537	87981737	-	1	NA	NA	NA	-46	NR_026990	434064	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	0.115000	0.711443	
mm_55859.1	chr6	83456284	83456484	-	1	NA	NA	NA	8	NM_001347313	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.120000	0.786070	
mm_93516.1	chr10	115287880	115288080	-	1	NA	NA	NA	27611	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.000000	0.333333	
mm_117108.1	chr13	60177033	60177233	-	1	NA	NA	NA	402	NM_008086	14451	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	0.140000	0.736318	
mm_124771.1	chr15	7090512	7090712	+	1	NA	NA	NA	-38960	NM_001113386	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.005000	0.547264	
mm_48653.1	chr5	145868903	145869103	-	1	NA	NA	NA	10851	NM_007818	13112	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	0.000000	0.462687	
mm_10041.1	chr1	192992360	192992560	-	1	NA	NA	NA	43315	NM_001301370	329324	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	0.010000	0.378109	58(CTGTTTTAAAAG,-,0.00)
mm_59465.1	chr7	27256392	27256592	+	1	NA	NA	NA	-2269	NM_010950	18223	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0.015000	0.532338	-46(GCCTTTAAATCC,+,0.00)
mm_115587.1	chr13	11826659	11826859	-	1	NA	NA	NA	280186	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.000000	0.398010	
mm_10087.1	chr2	3118342	3118542	+	1	NA	NA	NA	54	NM_001081161	269233	Mm.23044	NM_001081161	ENSMUSG00000050530	Fam171a1	9630050M13Rik|AA409679	family with sequence similarity 171, member A1	protein-coding	0.175000	0.825871	
mm_99304.1	chr11	101374563	101374763	+	1	NA	NA	NA	6947	NM_008061	14377	Mm.18064	NM_008061	ENSMUSG00000078650	G6pc	AW107337|G6Pase|G6pt|Glc-6-Pase	glucose-6-phosphatase, catalytic	protein-coding	0.025000	0.527363	
mm_71219.1	chr8	40898983	40899183	+	1	NA	NA	NA	-27150	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.065000	0.577114	
mm_54765.1	chr6	41313357	41313557	-	1	NA	NA	NA	1253	NM_001003405	103964	Mm.333022	NM_001003405	ENSMUSG00000036938	Try5	1810049H19Rik|Tc|Tesp4	trypsin 5	protein-coding	0.010000	0.467662	
mm_64173.1	chr7	141456920	141457120	+	1	NA	NA	NA	1832	NM_001163689	66853	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0.020000	0.542289	
mm_70693.1	chr8	15027096	15027296	+	1	NA	NA	NA	16171	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.030000	0.532338	
mm_129314.1	chr15	77760809	77761009	-	1	NA	NA	NA	-5680	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.010000	0.442786	
mm_12401.1	chr2	70475019	70475219	+	1	NA	NA	NA	196	NM_022435	64406	Mm.423397	NM_022435	ENSMUSG00000075304	Sp5	-	trans-acting transcription factor 5	protein-coding	0.090000	0.631841	
mm_64735.1	chr7	4724405	4724605	-	1	NA	NA	NA	577	NM_001142792	330460	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	0.015000	0.477612	
mm_135664.1	chr16	52407588	52407788	-	1	NA	NA	NA	45393	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.393035	
mm_61442.1	chr7	75457288	75457488	+	1	NA	NA	NA	1854	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.000000	0.343284	
mm_137878.1	chr17	31564702	31564902	+	1	NA	NA	NA	29	NM_016670	18771	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.130000	0.696517	
mm_42392.1	chr5	114937125	114937325	+	1	NA	NA	NA	-4977	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.040000	0.587065	
mm_12379.1	chr2	69861481	69861681	+	1	NA	NA	NA	19	NM_009278	20823	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	0.115000	0.686567	
mm_36538.1	chr4	86656936	86657136	-	1	NA	NA	NA	13023	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.010000	0.492537	
mm_124689.1	chr15	6435327	6435527	+	1	NA	NA	NA	-9906	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.015000	0.547264	
mm_13349.1	chr2	102998482	102998682	+	1	NA	NA	NA	74931	NM_175094	27402	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0.020000	0.427861	
mm_72762.1	chr8	85515650	85515850	+	1	NA	NA	NA	23133	NM_173866	108682	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.030000	0.517413	
mm_169193.1	chr13	66108714	66108914	+	1	NA	NA	NA	-4639	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.025000	0.522388	
mm_65901.1	chr7	30190614	30190814	-	1	NA	NA	NA	4334	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.010000	0.452736	
mm_28689.1	chr3	95518884	95519084	-	1	NA	NA	NA	-7802	NM_021281	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.030000	0.457711	
mm_103493.1	chr11	76571206	76571406	-	1	NA	NA	NA	78	NM_198895	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.085000	0.686567	
mm_106468.1	chr11	120086674	120086874	-	1	NA	NA	NA	53	NM_009734	12009	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	0.140000	0.776119	
mm_24931.1	chr3	96559558	96559758	+	1	NA	NA	NA	1701	NM_023719	56338	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.030000	0.477612	
mm_158768.1	chrX	166585547	166585747	-	1	NA	NA	NA	69	NM_019397	54156	Mm.37707	NM_019397	ENSMUSG00000000402	Egfl6	Maeg	EGF-like-domain, multiple 6	protein-coding	0.055000	0.641791	
mm_128680.1	chr15	60822119	60822319	-	1	NA	NA	NA	-746	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0.010000	0.507463	
mm_100081.1	chr11	115465455	115465655	+	1	NA	NA	NA	3082	NM_001080934	217316	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	0.035000	0.452736	
mm_151185.1	chr19	53421131	53421331	+	1	NA	NA	NA	-30658	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	0.035000	0.522388	
mm_162657.1	chr10	4354149	4354349	+	1	NA	NA	NA	33859	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.010000	0.552239	
mm_56553.1	chr6	100671002	100671202	-	1	NA	NA	NA	55	NM_181590	72171	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	0.125000	0.686567	
mm_137584.1	chr17	28007571	28007771	+	1	NA	NA	NA	72913	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.040000	0.527363	
mm_634.1	chr1	40363734	40363934	+	1	NA	NA	NA	39207	NM_133193	107527	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0.015000	0.452736	
mm_23784.1	chr3	79336592	79336792	+	1	NA	NA	NA	-8684	NM_001142953	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.015000	0.487562	
mm_137293.1	chr17	24752887	24753087	+	1	NA	NA	NA	-16	NM_001012402	328779	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	0.130000	0.776119	
mm_74327.1	chr8	126904052	126904252	+	1	NA	NA	NA	41769	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.035000	0.552239	
mm_49535.1	chr6	30175180	30175380	+	1	NA	NA	NA	-1155	NR_126541	101447999		NR_126540		Mirc35hg	-	microRNA cluster 35, host gene	ncRNA	0.035000	0.562189	
mm_83905.1	chr9	56202009	56202209	-	1	NA	NA	NA	-41039	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.020000	0.427861	
mm_10104.1	chr2	3512955	3513155	+	1	NA	NA	NA	-10	NM_177647	227526	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	0.045000	0.587065	
mm_19437.1	chr2	91963635	91963835	-	1	NA	NA	NA	-172	NM_138306	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.125000	0.771144	
mm_14913.1	chr2	150748992	150749192	+	1	NA	NA	NA	11	NM_172117	12497	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0.120000	0.661692	
mm_123359.1	chr14	63142834	63143034	-	1	NA	NA	NA	20472	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.015000	0.432836	
mm_107467.1	chr12	37241905	37242105	+	1	NA	NA	NA	366	NM_178767	319660	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	0.015000	0.467662	
mm_131569.1	chr16	18217796	18217996	+	1	NA	NA	NA	-4033	NR_015575	66779	Mm.387525	NR_015575		4933432I09Rik	-	RIKEN cDNA 4933432I09 gene	ncRNA	0.005000	0.597015	
mm_137933.1	chr17	32658896	32659096	+	1	NA	NA	NA	-487	NM_001101588	631304	Mm.328950	NM_001101588	ENSMUSG00000090700	Cyp4f40	EG631304	cytochrome P450, family 4, subfamily f, polypeptide 40	protein-coding	0.005000	0.522388	
mm_118816.1	chr14	25481096	25481296	+	1	NA	NA	NA	22011	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.010000	0.507463	
mm_95406.1	chr11	49846710	49846910	+	1	NA	NA	NA	59	NM_016961	26420	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0.130000	0.721393	
mm_67915.1	chr7	99828232	99828432	-	1	NA	NA	NA	85	NM_016720	50877	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	0.065000	0.616915	
mm_79202.1	chr9	48798233	48798433	+	1	NA	NA	NA	37612	NM_001033324	235320	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0.025000	0.502488	-32(TCTCATAAAAGG,-,0.00)
mm_119523.1	chr14	47515211	47515411	+	1	NA	NA	NA	42750	NM_001146085	78938	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	0.015000	0.547264	
mm_3089.1	chr1	134406280	134406480	+	1	NA	NA	NA	390	NM_028057	72017	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	0.060000	0.592040	
mm_48909.1	chr6	3993683	3993883	+	1	NA	NA	NA	-229	NM_010314	14699	Mm.95398	NM_010314	ENSMUSG00000029663	Gngt1	G(y)1|Gng1	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1	protein-coding	0.020000	0.402985	-93(CTTTTAATACCA,+,0.00)
mm_64305.1	chr7	141861913	141862113	+	1	NA	NA	NA	22941	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.005000	0.502488	
mm_154266.1	chr19	60771602	60771802	-	1	NA	NA	NA	2683	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.005000	0.368159	-16(CCTTTAATAAAG,+,0.00)
mm_161725.1	chr17	28080634	28080834	-	1	NA	NA	NA	-95	NM_001085555	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.070000	0.651741	
mm_140924.1	chr17	24220600	24220800	-	1	NA	NA	NA	69	NM_028056	72016	Mm.23881	NM_028056	ENSMUSG00000024118	1600002H07Rik	-	RIKEN cDNA 1600002H07 gene	protein-coding	0.085000	0.621891	
mm_28638.1	chr3	95219462	95219662	-	1	NA	NA	NA	-1620	NM_029885	213054	Mm.224820	NM_029885	ENSMUSG00000038766	Gabpb2	1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1	GA repeat binding protein, beta 2	protein-coding	0.015000	0.452736	29(CCTTTAATATCC,+,0.00)
mm_155128.1	chrX	49463850	49464050	+	1	NA	NA	NA	-6500	NM_001081123	75404	Mm.44305	NM_001081123	ENSMUSG00000036198	Arhgap36	1100001E04Rik|rho-gap	Rho GTPase activating protein 36	protein-coding	0.010000	0.552239	
mm_18493.1	chr2	62606212	62606412	-	1	NA	NA	NA	-32291	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.045000	0.442786	
mm_125098.1	chr15	27571506	27571706	+	1	NA	NA	NA	112	NR_106065	102466808		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0.040000	0.567164	
mm_65796.1	chr7	28907258	28907458	-	1	NA	NA	NA	25702	NM_001110807	60594	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	0.010000	0.557214	
mm_93239.1	chr10	95415374	95415574	-	1	NA	NA	NA	10	NM_001168656	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.025000	0.567164	
mm_90495.1	chr10	128033589	128033789	+	1	NA	NA	NA	-1657	NM_013608	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.005000	0.437811	82(TGCTTTAAAAAC,-,0.00),83(GCTTTAAAAACG,+,0.00)
mm_94238.1	chr11	3292850	3293050	+	1	NA	NA	NA	2493	NM_019574	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.020000	0.592040	
mm_2471.1	chr1	105675552	105675752	+	1	NA	NA	NA	11791	NM_173187	227446	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	0.005000	0.323383	49(TTGTATAAAAAC,-,0.00)
mm_135746.1	chr16	55916747	55916947	-	1	NA	NA	NA	18001	NM_001159364	74201	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	0.020000	0.427861	9(TCTTTTAGGGAA,+,0.00)
mm_4688.1	chr1	180641252	180641452	+	1	NA	NA	NA	202	NR_120498	72568	Mm.275044	NM_175186	ENSMUSG00000058729	Lin9	2700022J23Rik|Bara|Lin-9|TGS|TGS1|mLin-9	lin-9 homolog (C. elegans)	protein-coding	0.115000	0.676617	
mm_68065.1	chr7	101867218	101867418	-	1	NA	NA	NA	3470	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.020000	0.457711	
mm_9263.1	chr1	171631976	171632176	-	1	NA	NA	NA	9824	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.000000	0.373134	
mm_44454.1	chr5	21785074	21785274	-	1	NA	NA	NA	-9	NM_009584	22791	Mm.266312	NM_009584	ENSMUSG00000029014	Dnajc2	AU020218|MIDA1|Zrf1|Zrf2	DnaJ heat shock protein family (Hsp40) member C2	protein-coding	0.140000	0.741294	
mm_150508.1	chr19	39023849	39024049	+	1	NA	NA	NA	16930	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.010000	0.417910	
mm_104376.1	chr11	94375024	94375224	-	1	NA	NA	NA	17852	NM_029600	76408	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.025000	0.587065	
mm_24384.1	chr3	90253023	90253223	+	1	NA	NA	NA	-1158	NM_028881	74343	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2|mTORC2	CREB regulated transcription coactivator 2	protein-coding	0.000000	0.427861	
mm_154972.1	chrX	37178080	37178280	+	1	NA	NA	NA	-9338	NM_001033785	434756	Mm.471848	NM_001033785	ENSMUSG00000036551	Akap14	-	A kinase (PRKA) anchor protein 14	protein-coding	0.005000	0.422886	
mm_43042.1	chr5	124036159	124036359	+	1	NA	NA	NA	-3999	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.005000	0.383085	
mm_117428.1	chr13	74493868	74494068	-	1	NA	NA	NA	-18	NM_146231	235956	Mm.296909	NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.045000	0.507463	
mm_50702.1	chr6	52102875	52103075	+	1	NA	NA	NA	26	NR_110440	102635415	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|OTTMUSG00000018881|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA	0.020000	0.507463	
mm_19720.1	chr2	104426852	104427052	-	1	NA	NA	NA	1988	NR_035432	100316678		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	0.005000	0.298507	
mm_50240.1	chr6	42351478	42351678	+	1	NA	NA	NA	1750	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.010000	0.616915	
mm_166352.1	chr5	120029386	120029586	+	1	NA	NA	NA	-87027	NM_028762	74111	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	0.015000	0.522388	
mm_33168.1	chr4	126024619	126024819	+	1	NA	NA	NA	60	NM_001252651	12986	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.050000	0.626866	
mm_27391.1	chr3	50687208	50687408	-	1	NA	NA	NA	-243695	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.020000	0.417910	-33(GAGTATTTAAAG,-,0.00)
mm_84237.1	chr9	62282040	62282240	-	1	NA	NA	NA	39	NM_025721	66712	Mm.263615	NM_025721	ENSMUSG00000046846	Spesp1	4921508E09Rik|AI428149	sperm equatorial segment protein 1	protein-coding	0.080000	0.671642	
mm_31912.1	chr4	85205043	85205243	+	1	NA	NA	NA	-313	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.030000	0.562189	
mm_119832.1	chr14	54363313	54363513	+	1	NA	NA	NA	2572	NM_026936	69089	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	0.030000	0.562189	
mm_138326.1	chr17	34850381	34850581	+	1	NA	NA	NA	90	NM_001045864	27632	Mm.653	NM_138580	ENSMUSG00000024369	Nelfe	D17H6S45|NELF-E|RD|Rdbp	negative elongation factor complex member E, Rdbp	protein-coding	0.145000	0.721393	
mm_94206.1	chr11	3104956	3105156	+	1	NA	NA	NA	-18965	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.030000	0.502488	
mm_105705.1	chr11	108272208	108272408	-	1	NA	NA	NA	71580	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.000000	0.363184	
mm_111781.1	chr12	104343007	104343207	-	1	NA	NA	NA	4621	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.015000	0.507463	
mm_106911.1	chr12	8208040	8208240	+	1	NA	NA	NA	13	NM_001167767	68832	Mm.25608	NM_172401	ENSMUSG00000037669	Ldah	1110057K04Rik|mLDAH	lipid droplet associated hydrolase	protein-coding	0.095000	0.621891	
mm_19156.1	chr2	80581413	80581613	-	1	NA	NA	NA	-331	NM_016965	50884	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0.110000	0.706468	
mm_133670.1	chr16	92080772	92080972	+	1	NA	NA	NA	22536	NM_080456	121022	Mm.217354	NM_080456	ENSMUSG00000039680	Mrps6	AW046321	mitochondrial ribosomal protein S6	protein-coding	0.015000	0.348259	
mm_173169.1	chrX	42761177	42761377	+	1	NA	NA	NA	255955	NM_001313691	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	0.050000	0.631841	
mm_171093.1	chr3	127837407	127837607	-	1	NA	NA	NA	-15	NM_145964	211556	Mm.403486	NM_145964	ENSMUSG00000074238	Ap1ar	AA407621|C78909|Gadkin	adaptor-related protein complex 1 associated regulatory protein	protein-coding	0.160000	0.786070	
mm_91881.1	chr10	59733603	59733803	-	1	NA	NA	NA	31140	NM_001291443	216001	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0.020000	0.542289	
mm_83176.1	chr9	40783944	40784144	-	1	NA	NA	NA	-17229	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.010000	0.388060	-62(CCTTCTAAAAGG,-,0.00)
mm_51770.1	chr6	88060784	88060984	+	1	NA	NA	NA	-15614	NM_009005	19349	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.010000	0.472637	
mm_82755.1	chr9	26860759	26860959	-	1	NA	NA	NA	-36	NM_001113323	70893	Mm.78118	NM_001113323	ENSMUSG00000031966	Glb1l3	4921509F24Rik	galactosidase, beta 1 like 3	protein-coding	0.020000	0.527363	
mm_99695.1	chr11	106096901	106097101	+	1	NA	NA	NA	12099	NM_011947	26406	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.025000	0.437811	-24(CTCTTTAAATGC,-,0.00)
mm_47750.1	chr5	130948946	130949146	-	1	NA	NA	NA	358476	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.005000	0.363184	
mm_7916.1	chr1	133737888	133738088	-	1	NA	NA	NA	-11343	NR_105868	102466206		NR_105868	ENSMUSG00000098606	Mir6903	Gm27797|mmu-mir-6903	microRNA 6903	ncRNA	0.025000	0.502488	
mm_89147.1	chr10	86021876	86022076	+	1	NA	NA	NA	47	NM_153195	69754	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	0.135000	0.701493	
mm_140758.1	chr17	17550624	17550824	-	1	NA	NA	NA	73765	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.000000	0.477612	
mm_83870.1	chr9	55026432	55026632	-	1	NA	NA	NA	27	NM_145129	110834	Mm.63569	NM_145129	ENSMUSG00000032303	Chrna3	(a)3|A730007P14Rik|Acra-3|Acra3	cholinergic receptor, nicotinic, alpha polypeptide 3	protein-coding	0.115000	0.726368	
mm_92883.1	chr10	82763782	82763982	-	1	NA	NA	NA	259	NM_010914	18045	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	0.165000	0.751244	
mm_45443.1	chr5	67427490	67427690	-	1	NA	NA	NA	209	NM_001164806	666938	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.150000	0.766169	
mm_121197.1	chr14	103051500	103051700	+	1	NA	NA	NA	4588	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.005000	0.542289	
mm_70296.1	chr8	3676468	3676668	+	1	NA	NA	NA	91	NM_025701	66682	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	0.115000	0.651741	
mm_158956.1	chr1	88269171	88269371	-	1	NA	NA	NA	137	NR_040291	78605	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.020000	0.437811	
mm_142147.1	chr17	36006484	36006684	-	1	NA	NA	NA	12080	NR_015618	77810	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0.015000	0.402985	
mm_96878.1	chr11	70214924	70215124	+	1	NA	NA	NA	1114	NM_153081	216867	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0.060000	0.646766	
mm_26684.1	chr3	156562014	156562214	+	1	NA	NA	NA	320	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.075000	0.626866	
mm_148073.1	chr18	72350703	72350903	-	1	NA	NA	NA	266	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.030000	0.527363	
mm_18188.1	chr2	45112901	45113101	-	1	NA	NA	NA	278	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.045000	0.492537	
mm_164386.1	chr16	32109007	32109207	+	1	NA	NA	NA	9305	NM_025892	66994	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0.015000	0.537313	
mm_29726.1	chr3	125938512	125938712	-	1	NA	NA	NA	-62	NM_011674	22239	Mm.306021	NM_011674	ENSMUSG00000032854	Ugt8a	AI850488|AW455908|Cgt|Ugt8|mCerGT	UDP galactosyltransferase 8A	protein-coding	0.155000	0.796020	
mm_150224.1	chr19	33964446	33964646	+	1	NA	NA	NA	3298	NM_026334	67717	Mm.329816	NM_026334	ENSMUSG00000024768	Lipf	2310051B21Rik|AV082900	lipase, gastric	protein-coding	0.010000	0.417910	
mm_82288.1	chr9	7604081	7604281	-	1	NA	NA	NA	-24050	NM_013903	30800	Mm.390121	NM_013903	ENSMUSG00000018620	Mmp20	-	matrix metallopeptidase 20 (enamelysin)	protein-coding	0.020000	0.517413	
mm_64531.1	chr7	144132800	144133000	+	1	NA	NA	NA	-42620	NM_001113373	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.025000	0.537313	66(TTCCATTAAAGC,-,0.00)
mm_161317.1	chr14	44171229	44171429	-	1	NA	NA	NA	42	NM_029131	74954	Mm.425904	NM_029131	ENSMUSG00000072595	4930503E14Rik	-	RIKEN cDNA 4930503E14 gene	protein-coding	0.015000	0.467662	
mm_110757.1	chr12	70111196	70111396	-	1	NA	NA	NA	333	NR_104398	18080	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0.080000	0.691542	
mm_54313.1	chr6	30173978	30174178	-	1	NA	NA	NA	47	NR_126540	101447999		NR_126540		Mirc35hg	-	microRNA cluster 35, host gene	ncRNA	0.085000	0.676617	
mm_22294.1	chr2	180262488	180262688	-	1	NA	NA	NA	5052	NR_037274	100526556		NR_037274	ENSMUSG00000092827	Mir3091	mir-3091|mmu-mir-3091	microRNA 3091	ncRNA	0.015000	0.527363	
mm_30311.1	chr3	149445374	149445574	-	1	NA	NA	NA	170737	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.025000	0.442786	
mm_58855.1	chr7	16891678	16891878	+	1	NA	NA	NA	-8	NM_010320	14709	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	0.040000	0.592040	
mm_26693.1	chr3	156740663	156740863	+	1	NA	NA	NA	178969	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.005000	0.343284	
mm_15948.1	chr2	165918495	165918695	+	1	NA	NA	NA	-33757	NM_001252587	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.005000	0.442786	
mm_97705.1	chr11	80178112	80178312	+	1	NA	NA	NA	-5660	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.010000	0.472637	
mm_72805.1	chr8	87472773	87472973	+	1	NA	NA	NA	61	NR_033430	100040294	Mm.213632	NR_033430	ENSMUSG00000097248	Gm2694	C230036H16Rik|linc1582	predicted gene 2694	ncRNA	0.135000	0.721393	
mm_41357.1	chr5	90506434	90506634	+	1	NA	NA	NA	-12415	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.025000	0.442786	
mm_64956.1	chr7	16497712	16497912	-	1	NA	NA	NA	-21032	NM_008718	18142	Mm.145821	NM_008718	ENSMUSG00000001988	Npas1	MOP5|bHLHe11	neuronal PAS domain protein 1	protein-coding	0.035000	0.621891	
mm_127301.1	chr15	100227228	100227428	+	1	NA	NA	NA	-531	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.020000	0.393035	-98(TTCTATTTAAAG,-,0.00)
mm_162983.1	chr11	21370704	21370904	-	1	NA	NA	NA	-175	NM_139297	216558	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0.100000	0.766169	88(GGCTATTTATGG,-,0.00)
mm_147843.1	chr18	63386401	63386601	-	1	NA	NA	NA	682	NM_001039485	667742	Mm.158720	NM_172629	ENSMUSG00000041482	Piezo2	5930434P17|9030411M15Rik|9430028L06Rik|Fam38b|Fam38b2	piezo-type mechanosensitive ion channel component 2	protein-coding	0.090000	0.706468	
mm_68709.1	chr7	119888222	119888422	-	1	NA	NA	NA	7136	NM_173408	233805	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0.010000	0.358209	
mm_84882.1	chr9	79718739	79718939	-	1	NA	NA	NA	-117	NM_001290308	12816	Mm.3819	NM_007730	ENSMUSG00000032332	Col12a1	-	collagen, type XII, alpha 1	protein-coding	0.085000	0.656716	
mm_14947.1	chr2	151962684	151962884	+	1	NA	NA	NA	4833	NR_035478	100316704		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	0.040000	0.517413	
mm_137981.1	chr17	33591151	33591351	+	1	NA	NA	NA	35544	NM_053214	17916	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0.005000	0.398010	
mm_93499.1	chr10	112928736	112928936	-	1	NA	NA	NA	190	NM_001033474	382423	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132|ENSMUSG00000074747	ataxin 7-like 3B	protein-coding	0.150000	0.716418	
mm_69371.1	chr7	130792152	130792352	-	1	NA	NA	NA	18183	NM_001081038	330660	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0.015000	0.537313	
mm_163343.1	chr12	16580817	16581017	-	1	NA	NA	NA	8853	NM_015763	14245	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188	lipin 1	protein-coding	0.045000	0.567164	
mm_5687.1	chr1	43183681	43183881	-	1	NA	NA	NA	12980	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.005000	0.412935	33(TCCTTTATAAGA,-,0.00)
mm_78331.1	chr9	25252549	25252749	+	1	NA	NA	NA	210	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.135000	0.741294	
mm_144290.1	chr18	12135756	12135956	+	1	NA	NA	NA	7006	NM_024182	66878	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	0.010000	0.388060	
mm_110104.1	chr12	26413906	26414106	-	1	NA	NA	NA	1004	NR_105856	102466676		NR_105856	ENSMUSG00000098771	Mir6538	Gm27439|mmu-mir-6538	microRNA 6538	ncRNA	0.020000	0.537313	
mm_40025.1	chr5	33371603	33371803	+	1	NA	NA	NA	-6993	NM_001081101	71101	Mm.132178	NM_001081101	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	0.015000	0.557214	-66(GCTCTAAGAGCC,+,0.00)
mm_27088.1	chr3	30013294	30013494	-	1	NA	NA	NA	-190	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.015000	0.482587	
mm_34449.1	chr4	148001698	148001898	+	1	NA	NA	NA	1076	NM_008725	230899	Mm.482123	NM_008725	ENSMUSG00000041616	Nppa	ANP|Anf|Pnd	natriuretic peptide type A	protein-coding	0.030000	0.467662	-70(GCCCAGTAAAGG,-,0.00)
mm_141661.1	chr17	33760375	33760575	-	1	NA	NA	NA	11	NM_008997	19326	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0.045000	0.562189	
mm_5863.1	chr1	53774000	53774200	-	1	NA	NA	NA	11115	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.015000	0.427861	
mm_27467.1	chr3	52634388	52634588	-	1	NA	NA	NA	-105236	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	0.015000	0.447761	
mm_10416.1	chr2	13580009	13580209	+	1	NA	NA	NA	5798	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.035000	0.502488	
mm_62404.1	chr7	101148059	101148259	+	1	NA	NA	NA	39384	NM_199012	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.000000	0.343284	
mm_80614.1	chr9	88327529	88327729	+	1	NA	NA	NA	20	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	0.080000	0.691542	
mm_158638.1	chrX	155215602	155215802	-	1	NA	NA	NA	747	NM_009121	20229	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	0.015000	0.537313	
mm_2839.1	chr1	131562852	131563052	+	1	NA	NA	NA	35049	NM_175382	108900	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	0.000000	0.492537	-33(GCTTTAAGACCC,+,0.00)
mm_70602.1	chr8	13351554	13351754	+	1	NA	NA	NA	12850	NM_009361	21781	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	0.010000	0.547264	
mm_24360.1	chr3	90072549	90072749	+	1	NA	NA	NA	-2	NM_001293748	59069	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0.015000	0.567164	
mm_144830.1	chr18	36365680	36365880	+	1	NA	NA	NA	17156	NM_001081365	66060	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.015000	0.477612	
mm_131424.1	chr16	14708187	14708387	+	1	NA	NA	NA	2428	NM_011415	20583	Mm.4272	NM_011415	ENSMUSG00000022676	Snai2	Slug|Slugh|Snail2	snail family zinc finger 2	protein-coding	0.010000	0.432836	
mm_112457.1	chr13	5864687	5864887	+	1	NA	NA	NA	3298	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.025000	0.482587	
mm_79375.1	chr9	54699033	54699233	+	1	NA	NA	NA	-426	NM_021422	58233	Mm.489676	NM_021422	ENSMUSG00000032285	Dnaja4	1110021L12Rik|AV358213|Dj4|Hsj4|mmDjA4	DnaJ heat shock protein family (Hsp40) member A4	protein-coding	0.080000	0.701493	
mm_141369.1	chr17	29007718	29007918	-	1	NA	NA	NA	119	NM_134115	106504	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0.135000	0.716418	
mm_73260.1	chr8	104340616	104340816	+	1	NA	NA	NA	122	NM_024217	68119	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.080000	0.666667	
mm_62227.1	chr7	98506854	98507054	+	1	NA	NA	NA	12732	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.005000	0.442786	
mm_156380.1	chrX	139672038	139672238	+	1	NA	NA	NA	-12858	NM_001081499	245638	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	0.015000	0.313433	42(TGCTTTAAAAGT,-,0.00),43(GCTTTAAAAGTG,+,0.00)
mm_167360.1	chr8	84774377	84774577	-	1	NA	NA	NA	-108	NM_001297601	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.015000	0.606965	
mm_104725.1	chr11	98321183	98321383	-	1	NA	NA	NA	8362	NM_010895	18013	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0.040000	0.567164	
mm_123343.1	chr14	63138325	63138525	-	1	NA	NA	NA	15963	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.557214	
mm_123670.1	chr14	69249052	69249252	-	1	NA	NA	NA	35951	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.005000	0.323383	
mm_56999.1	chr6	121002971	121003171	-	1	NA	NA	NA	44227	NR_138099	215458	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	0.000000	0.542289	
mm_80281.1	chr9	73039653	73039853	+	1	NA	NA	NA	35	NM_001308425	66364	Mm.392089	NM_001308425		2310009A05Rik	5031420N21Rik	RIKEN cDNA 2310009A05 gene	protein-coding	0.080000	0.601990	
mm_172174.1	chr6	4747038	4747238	-	1	NA	NA	NA	66	NM_001130188	20392	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	0.045000	0.621891	
mm_107166.1	chr12	24682598	24682798	+	1	NA	NA	NA	-903	NM_001161807	12879	Mm.52265	NM_138686	ENSMUSG00000062563	Cys1	2900006B19Rik|AV218859|Ccap|ck|cpk	cystin 1	protein-coding	0.030000	0.447761	
mm_91709.1	chr10	44148725	44148925	-	1	NA	NA	NA	-21622	NR_001582	70365	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	0.080000	0.671642	
mm_57309.1	chr6	124721812	124722012	-	1	NA	NA	NA	-3522	NR_029792	723944		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0.025000	0.582090	
mm_65839.1	chr7	29232474	29232674	-	1	NA	NA	NA	-52	NM_001033525	52150	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	0.110000	0.701493	
mm_69567.1	chr7	135700627	135700827	-	1	NA	NA	NA	15652	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.422886	
mm_124253.1	chr14	101892130	101892330	-	1	NA	NA	NA	51607	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.025000	0.547264	
mm_15481.1	chr2	157561678	157561878	+	1	NA	NA	NA	1700	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.040000	0.631841	7(CCCCAGAAAAGC,-,0.00)
mm_34790.1	chr4	154237493	154237693	+	1	NA	NA	NA	62302	NM_001112744	230972	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.015000	0.597015	-66(GACCATAAAGGC,-,0.00)
mm_26129.1	chr3	137867966	137868166	+	1	NA	NA	NA	391	NM_001033155	70604	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	0.140000	0.791045	
mm_76699.1	chr8	94363932	94364132	-	1	NA	NA	NA	-22468	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.000000	0.492537	-33(CTTTAAATAGAG,+,0.00)
mm_8975.1	chr1	165460359	165460559	-	1	NA	NA	NA	4	NM_028759	74106	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	0.105000	0.711443	
mm_30928.1	chr4	32800168	32800368	+	1	NA	NA	NA	9	NM_175364	108755	Mm.1182	NM_175364	ENSMUSG00000045854	Lyrm2	2610208E05Rik	LYR motif containing 2	protein-coding	0.090000	0.671642	
mm_91807.1	chr10	53932733	53932933	-	1	NA	NA	NA	142963	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.020000	0.358209	
mm_55691.1	chr6	72789115	72789315	-	1	NA	NA	NA	-170	NM_009332	21415	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.110000	0.766169	
mm_41214.1	chr5	88581323	88581523	+	1	NA	NA	NA	-2090	NM_001289777	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.005000	0.472637	
mm_58410.1	chr7	3289106	3289306	+	1	NA	NA	NA	168	NM_001093764	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.050000	0.636816	
mm_151532.1	chr19	58759623	58759823	+	1	NA	NA	NA	0	NM_011128	18947	Mm.212333	NM_011128	ENSMUSG00000025091	Pnliprp2	PLRP2	pancreatic lipase-related protein 2	protein-coding	0.030000	0.601990	
mm_127452.1	chr15	101270684	101270884	+	1	NA	NA	NA	3938	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.045000	0.646766	
mm_50210.1	chr6	42264908	42265108	+	1	NA	NA	NA	23	NM_007610	12366	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	0.105000	0.701493	
mm_116543.1	chr13	45940597	45940797	-	1	NA	NA	NA	24294	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.005000	0.318408	-7(TTTTTTAAAGCC,+,0.00)
mm_135594.1	chr16	50722780	50722980	-	1	NA	NA	NA	-4252	NR_105782	102466634		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA	0.000000	0.353234	
mm_51670.1	chr6	86404130	86404330	+	1	NA	NA	NA	11	NM_001164078	21841	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	0.095000	0.666667	
mm_126594.1	chr15	82354393	82354593	+	1	NA	NA	NA	-202	NM_025987	67130	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	0.085000	0.626866	
mm_146175.1	chr18	75367933	75368133	+	1	NA	NA	NA	668	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.025000	0.422886	
mm_110645.1	chr12	58952916	58953116	-	1	NA	NA	NA	59001	NM_009147	20334	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	0.005000	0.398010	
mm_76141.1	chr8	81823049	81823249	-	1	NA	NA	NA	480587	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.000000	0.373134	
mm_46670.1	chr5	108795248	108795448	-	1	NA	NA	NA	15	NM_026109	67366	Mm.46274	NM_026109	ENSMUSG00000004821	Tmed11	1810008K16Rik	transmembrane p24 trafficking protein 11	protein-coding	0.005000	0.373134	
mm_45183.1	chr5	51872003	51872203	-	1	NA	NA	NA	263914	NR_105845	102466648		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0.010000	0.298507	
mm_24553.1	chr3	93443362	93443562	+	1	NA	NA	NA	1132	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.045000	0.467662	
mm_33388.1	chr4	129795631	129795831	+	1	NA	NA	NA	-24748	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.005000	0.517413	
mm_137732.1	chr17	29307996	29308196	+	1	NA	NA	NA	-10786	NM_023734	74116	Mm.30950	NM_023734	ENSMUSG00000024011	Pi16	1200009H11Rik|Cripi|PI-16	peptidase inhibitor 16	protein-coding	0.035000	0.487562	
mm_114600.1	chr13	75770689	75770889	+	1	NA	NA	NA	63305	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.000000	0.343284	
mm_71729.1	chr8	61983903	61984103	+	1	NA	NA	NA	55916	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.015000	0.388060	
mm_789.1	chr1	45333511	45333711	+	1	NA	NA	NA	22073	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.020000	0.487562	
mm_47610.1	chr5	125124723	125124923	-	1	NA	NA	NA	54391	NM_001253905	20602	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.025000	0.601990	
mm_28667.1	chr3	95281678	95281878	-	1	NA	NA	NA	298	NM_173347	229589	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	0.075000	0.646766	
mm_40148.1	chr5	35388763	35388963	+	1	NA	NA	NA	-254	NM_010445	15371	Mm.358606	NM_010445	ENSMUSG00000067438	Hmx1	Nkx5-3	H6 homeobox 1	protein-coding	0.150000	0.776119	
mm_128193.1	chr15	34996001	34996201	-	1	NA	NA	NA	158052	NM_001271704	16539	Mm.71045	NM_181317	ENSMUSG00000050963	Kcns2	E130006J24Rik|Kv9.2	K+ voltage-gated channel, subfamily S, 2	protein-coding	0.010000	0.467662	
mm_14641.1	chr2	136891481	136891681	+	1	NA	NA	NA	-175	NM_001286983	59030	Mm.272570	NM_021527	ENSMUSG00000027274	Mkks	1300013E18Rik|AI463362|AI957237|Bbs6	McKusick-Kaufman syndrome	protein-coding	0.065000	0.577114	
mm_75463.1	chr8	47818112	47818312	-	1	NA	NA	NA	-3931	NM_001111318	100039801	Mm.471595	NM_001111318	ENSMUSG00000061974	Cldn24	ENSMUSG00000061974|Gm10107	claudin 24	protein-coding	0.000000	0.572139	
mm_159854.1	chr5	137857914	137858114	-	1	NA	NA	NA	35	NM_133209	170741	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	0.005000	0.547264	
mm_37949.1	chr4	133212391	133212591	-	1	NA	NA	NA	45	NM_008154	14748	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	0.120000	0.761194	
mm_157166.1	chrX	9467136	9467336	-	1	NA	NA	NA	2088	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.492537	
mm_108442.1	chr12	82397284	82397484	+	1	NA	NA	NA	86035	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.020000	0.467662	
mm_27123.1	chr3	31310261	31310461	-	1	NA	NA	NA	-42	NM_172861	241919	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.065000	0.616915	
mm_63005.1	chr7	120843462	120843662	+	1	NA	NA	NA	-38	NM_001267710	13631	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.065000	0.611940	
mm_95224.1	chr11	44469818	44470018	+	1	NA	NA	NA	630	NM_024475	79560	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	0.065000	0.507463	
mm_65433.1	chr7	25367989	25368189	-	1	NA	NA	NA	1635	NM_001081375	72383	Mm.34382	NM_028219	ENSMUSG00000063651	Cnfn	2210418J09Rik	cornifelin	protein-coding	0.080000	0.691542	
mm_53570.1	chr6	137252440	137252640	+	1	NA	NA	NA	241	NM_011216	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.090000	0.656716	
mm_28940.1	chr3	98882202	98882402	-	1	NA	NA	NA	10928	NM_019545	56185	Mm.281874	NM_019545	ENSMUSG00000027870	Hao2	AI325478|Hao-2|Hao3|Haox3	hydroxyacid oxidase 2	protein-coding	0.015000	0.437811	
mm_11775.1	chr2	38931856	38932056	+	1	NA	NA	NA	-24	NM_172854	241327	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	0.080000	0.701493	
mm_14940.1	chr2	151561047	151561247	+	1	NA	NA	NA	-11476	NM_145535	228765	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0.010000	0.507463	43(GCCTTTTAAAGC,-,0.00),44(CCTTTTAAAGCA,+,0.00)
mm_55371.1	chr6	57824998	57825198	-	1	NA	NA	NA	27	NM_146168	232023	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.145000	0.746269	
mm_50315.1	chr6	47877530	47877730	+	1	NA	NA	NA	75	NM_146175	101095	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	0.065000	0.656716	
mm_144395.1	chr18	20673677	20673877	+	1	NA	NA	NA	8527	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.020000	0.502488	32(TGCTCTATAAAC,-,0.00)
mm_134349.1	chr16	16571388	16571588	-	1	NA	NA	NA	-11269	NM_139232	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.010000	0.407960	
mm_88504.1	chr10	77862171	77862371	+	1	NA	NA	NA	296	NM_001101631	100041351	Mm.441672	NM_001101631		Gm3285	-	predicted gene 3285	protein-coding	0.000000	0.611940	
mm_82145.1	chr9	123773425	123773625	+	1	NA	NA	NA	6314	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.005000	0.487562	-10(CCTTTTCTGGCA,+,0.00)
mm_63294.1	chr7	126807646	126807846	+	1	NA	NA	NA	-7299	NM_001177308	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.010000	0.597015	
mm_108116.1	chr12	75596374	75596574	+	1	NA	NA	NA	-274	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.120000	0.736318	
mm_94229.1	chr11	3289801	3290001	+	1	NA	NA	NA	-556	NM_001253690	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.060000	0.646766	
mm_32678.1	chr4	115784718	115784918	+	1	NA	NA	NA	4	NM_181040	230649	Mm.109600	NM_181040	ENSMUSG00000028710	Atpaf1	6330547J17Rik|AI593252|ATP11|ATP11p	ATP synthase mitochondrial F1 complex assembly factor 1	protein-coding	0.065000	0.671642	
mm_155862.1	chrX	101377204	101377404	+	1	NA	NA	NA	69	NM_008124	14618	Mm.21198	NM_008124	ENSMUSG00000047797	Gjb1	Cnx32|Cx32|connexin-32	gap junction protein, beta 1	protein-coding	0.015000	0.606965	
mm_46638.1	chr5	108525430	108525630	-	1	NA	NA	NA	24497	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.030000	0.582090	
mm_32159.1	chr4	99971663	99971863	+	1	NA	NA	NA	42312	NM_028132	72157	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.005000	0.412935	
mm_16176.1	chr2	172551411	172551611	+	1	NA	NA	NA	520	NM_001159696	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding	0.085000	0.626866	
mm_73487.1	chr8	107031260	107031460	+	1	NA	NA	NA	34	NM_126165	116733	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0.125000	0.756219	
mm_144479.1	chr18	23954586	23954786	+	1	NA	NA	NA	-2	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.130000	0.721393	
mm_33837.1	chr4	135686376	135686576	+	1	NA	NA	NA	19	NM_174851	242700	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	0.100000	0.746269	
mm_5074.1	chr1	3654797	3654997	-	1	NA	NA	NA	16601	NM_001011874	497097	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.000000	0.338308	
mm_33043.1	chr4	122961212	122961412	+	1	NA	NA	NA	-124	NM_029662	76574	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.070000	0.616915	
mm_153466.1	chr19	41264202	41264402	-	1	NA	NA	NA	-298	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.080000	0.567164	
mm_101534.1	chr11	33203506	33203706	-	1	NA	NA	NA	-18	NM_019916	27140	Mm.25362	NM_019916	ENSMUSG00000040610	Tlx3	Hox11l2|Rnx|Tlx1l2	T cell leukemia, homeobox 3	protein-coding	0.085000	0.606965	
mm_91305.1	chr10	24917852	24918052	-	1	NA	NA	NA	7288	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.015000	0.547264	
mm_82587.1	chr9	21237123	21237323	-	1	NA	NA	NA	2109	NM_016679	50868	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.080000	0.597015	
mm_125879.1	chr15	75634151	75634351	+	1	NA	NA	NA	17567	NM_011759	22701	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0.025000	0.477612	
mm_111990.1	chr12	110682461	110682661	-	1	NA	NA	NA	58	NM_025488	66323	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	0.000000	0.507463	
mm_15876.1	chr2	164836335	164836535	+	1	NA	NA	NA	2662	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.010000	0.542289	
mm_79412.1	chr9	55201486	55201686	+	1	NA	NA	NA	-7349	NM_028049	71999	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	0.020000	0.412935	
mm_79404.1	chr9	55149206	55149406	+	1	NA	NA	NA	-63	NM_180600	109161	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0.135000	0.771144	39(GCCCTTTTAAGC,-,0.00),41(CCTTTTAAGCCG,+,0.00)
mm_85160.1	chr9	96349793	96349993	-	1	NA	NA	NA	14406	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.000000	0.358209	-7(TTTTTTAAAGAG,+,0.00)
mm_53549.1	chr6	136831817	136832017	+	1	NA	NA	NA	3074	NM_178776	320135	Mm.386899	NM_178776	ENSMUSG00000047515	BC049715	-	cDNA sequence BC049715	protein-coding	0.020000	0.492537	
mm_92851.1	chr10	81524178	81524378	-	1	NA	NA	NA	-53	NM_010304	14676	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.015000	0.636816	
mm_112119.1	chr12	112829395	112829595	-	1	NA	NA	NA	-106	NM_028023	71963	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	0.150000	0.736318	
mm_100343.1	chr11	118393910	118394110	+	1	NA	NA	NA	7921	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.035000	0.552239	
mm_640.1	chr1	40399772	40399972	+	1	NA	NA	NA	-29698	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.015000	0.522388	
mm_69423.1	chr7	132771226	132771426	-	1	NA	NA	NA	5590	NM_001347630	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.000000	0.363184	
mm_29782.1	chr3	127498912	127499112	-	1	NA	NA	NA	103	NM_001327938	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.095000	0.666667	
mm_96901.1	chr11	70452140	70452340	+	1	NA	NA	NA	309	NM_025397	66172	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0.065000	0.616915	
mm_6894.1	chr1	84696072	84696272	-	1	NA	NA	NA	49	NM_152915	227325	Mm.292560	NM_152915	ENSMUSG00000036766	Dner	A930026D19Rik|BET|Bret	delta/notch-like EGF repeat containing	protein-coding	0.060000	0.592040	
mm_125363.1	chr15	39462996	39463196	+	1	NA	NA	NA	-196415	NM_001256384	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.005000	0.338308	-41(AGATATATAAGG,-,0.00)
mm_136149.1	chr16	87612245	87612445	-	1	NA	NA	NA	59015	NM_144854	224419	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	0.025000	0.477612	
mm_97418.1	chr11	77985656	77985856	+	1	NA	NA	NA	2940	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0.010000	0.452736	
mm_98460.1	chr11	94947789	94947989	+	1	NA	NA	NA	11665	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.015000	0.567164	
mm_25181.1	chr3	103309664	103309864	+	1	NA	NA	NA	30471	NM_001079830	94093	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.020000	0.452736	
mm_126144.1	chr15	78348949	78349149	+	1	NA	NA	NA	450	NR_106138	102466845		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0.005000	0.562189	
mm_25499.1	chr3	109386575	109386775	+	1	NA	NA	NA	45992	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.015000	0.363184	
mm_119081.1	chr14	30886371	30886571	+	1	NA	NA	NA	-5	NM_001159299	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.010000	0.552239	
mm_146733.1	chr18	15331764	15331964	-	1	NA	NA	NA	71135	NM_001308647	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.005000	0.502488	
mm_87355.1	chr10	43610414	43610614	+	1	NA	NA	NA	17087	NR_033558	414125	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	0.000000	0.373134	
mm_5958.1	chr1	56971626	56971826	-	1	NA	NA	NA	257	NR_024325	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0.060000	0.577114	
mm_148022.1	chr18	68475068	68475268	-	1	NA	NA	NA	-45848	NM_001271716	17200	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	0.025000	0.432836	
mm_111365.1	chr12	87159848	87160048	-	1	NA	NA	NA	-4463	NR_136901	625237	Mm.390529	NR_136901		Gm6566	EG625237	predicted gene 6566	ncRNA	0.000000	0.472637	
mm_123368.1	chr14	63171261	63171461	-	1	NA	NA	NA	8217	NM_010191	14137	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	0.020000	0.363184	18(GTTTTAATGGCA,+,0.00)
mm_99350.1	chr11	101583483	101583683	+	1	NA	NA	NA	1341	NM_144830	217203	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.010000	0.462687	
mm_56486.1	chr6	99173213	99173413	-	1	NA	NA	NA	93202	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.020000	0.477612	
mm_153318.1	chr19	38116732	38116932	-	1	NA	NA	NA	7979	NM_011255	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.015000	0.412935	
mm_145785.1	chr18	65143484	65143684	+	1	NA	NA	NA	-105277	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.015000	0.572139	-95(CCTTATATGTTC,+,0.00)
mm_110429.1	chr12	46818992	46819192	-	1	NA	NA	NA	-317	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.145000	0.766169	
mm_135896.1	chr16	65562543	65562743	-	1	NA	NA	NA	54	NM_026879	68942	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0.100000	0.656716	
mm_87730.1	chr10	60129578	60129778	+	1	NA	NA	NA	2902	NR_105871	102465546		NR_105871	ENSMUSG00000105468	Mir6906	mmu-mir-6906	microRNA 6906	ncRNA	0.005000	0.572139	
mm_111606.1	chr12	102398286	102398486	-	1	NA	NA	NA	41427	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.015000	0.512438	
mm_41131.1	chr5	87788603	87788803	+	1	NA	NA	NA	14253	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.015000	0.343284	
mm_133025.1	chr16	57121697	57121897	+	1	NA	NA	NA	83	NM_138599	28185	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70 homolog A (yeast)	protein-coding	0.140000	0.716418	
mm_47553.1	chr5	124354713	124354913	-	1	NA	NA	NA	-185	NM_013812	13445	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0.110000	0.656716	
mm_59537.1	chr7	27765596	27765796	+	1	NA	NA	NA	23	NR_033484	100043229	Mm.458666	NR_033484	ENSMUSG00000109143	Gm10046	ENSMUSG00000058661	predicted gene 10046	ncRNA	0.035000	0.631841	
mm_37318.1	chr4	119359809	119360009	-	1	NA	NA	NA	-15	NM_001270446	73332	Mm.425204	NM_028506	ENSMUSG00000028637	Ccdc30	1700001O02Rik|1700041C02Rik|1700111D19Rik|4930445I03Rik	coiled-coil domain containing 30	protein-coding	0.045000	0.467662	
mm_49527.1	chr6	30027098	30027298	+	1	NA	NA	NA	-20790	NM_010938	18181	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	0.015000	0.467662	
mm_134637.1	chr16	21762096	21762296	-	1	NA	NA	NA	25638	NM_023737	74147	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0.005000	0.557214	
mm_33242.1	chr4	127025782	127025982	+	1	NA	NA	NA	4581	NM_023603	71514	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|OTTMUSG00000009329|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.010000	0.363184	
mm_105633.1	chr11	106973032	106973232	-	1	NA	NA	NA	26393	NM_010655	16647	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.015000	0.462687	
mm_60596.1	chr7	44496609	44496809	+	1	NA	NA	NA	121	NM_028169	75538	Mm.258841	NM_028169	ENSMUSG00000051113	Fam71e1	0610007G24Rik|1700021N13Rik|1700021P22Rik|GARI-L5	family with sequence similarity 71, member E1	protein-coding	0.055000	0.636816	
mm_34286.1	chr4	141545122	141545322	+	1	NA	NA	NA	-940	NR_030695	320456	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.080000	0.726368	
mm_111151.1	chr12	83004407	83004607	-	1	NA	NA	NA	-65352	NR_046045	74283	Mm.398247	NR_046045	ENSMUSG00000100890	1700085C21Rik	-	RIKEN cDNA 1700085C21 gene	ncRNA	0.010000	0.537313	
mm_79954.1	chr9	66126636	66126836	+	1	NA	NA	NA	125	NM_026635	68250	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	0.055000	0.517413	
mm_12627.1	chr2	74704536	74704736	+	1	NA	NA	NA	21	NM_001290731	15437	Mm.280673	NM_008276	ENSMUSG00000027102	Hoxd8	4921540P06Rik|AI047735|Hox-4.3|Hox-5.4	homeobox D8	protein-coding	0.045000	0.552239	
mm_119948.1	chr14	55001045	55001245	+	1	NA	NA	NA	-6596	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.005000	0.497512	
mm_11481.1	chr2	32385396	32385596	+	1	NA	NA	NA	2243	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.020000	0.537313	
mm_138859.1	chr17	42501394	42501594	+	1	NA	NA	NA	109819	NM_181753	353344	Mm.184937	NM_181753	ENSMUSG00000043972	Opn5	Gpr136|Neuropsin|PGR12|TMEM13	opsin 5	protein-coding	0.025000	0.452736	-34(CTGCATAAAAAG,-,0.00)
mm_145379.1	chr18	56925673	56925873	+	1	NA	NA	NA	-225	NM_177115	320253	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0.080000	0.631841	
mm_4912.1	chr1	190171951	190172151	+	1	NA	NA	NA	-1371	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding	0.050000	0.477612	
mm_129456.1	chr15	78570690	78570890	-	1	NA	NA	NA	1993	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.020000	0.562189	
mm_53925.1	chr6	4540711	4540911	-	1	NA	NA	NA	35193	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.005000	0.388060	76(TTTTTTAAAGGA,+,0.00)
mm_136367.1	chr16	92808873	92809073	-	1	NA	NA	NA	17101	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.000000	0.502488	
mm_96087.1	chr11	60240633	60240833	+	1	NA	NA	NA	-20106	NM_001313979	20787	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP-1a|SREBP1|SREBP1c|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.020000	0.542289	-32(GCATTTAAAGGC,+,0.00),-32(GCATTTAAAGGC,-,0.00)
mm_100836.1	chr11	5542098	5542298	-	1	NA	NA	NA	19	NM_134033	104479	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	0.070000	0.606965	
mm_27939.1	chr3	79622692	79622892	-	1	NA	NA	NA	5975	NM_025794	66841	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	0.025000	0.547264	
mm_102756.1	chr11	67301917	67302117	-	1	NA	NA	NA	24893	NM_177369	17885	Mm.340163	NM_177369	ENSMUSG00000055775	Myh8	4832426G23Rik|AI327267|MHCp|MyHC-pn|Myhs-p|Myhsp	myosin, heavy polypeptide 8, skeletal muscle, perinatal	protein-coding	0.005000	0.507463	
mm_83931.1	chr9	56635791	56635991	-	1	NA	NA	NA	-243	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.100000	0.726368	
mm_140647.1	chr17	12688672	12688872	-	1	NA	NA	NA	-12934	NM_009202	20517	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.015000	0.477612	-34(TCTTATAAAAAG,-,0.00)
mm_126357.1	chr15	80012153	80012353	+	1	NA	NA	NA	2555	NM_011057	18591	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.135000	0.721393	
mm_68353.1	chr7	106510028	106510228	-	1	NA	NA	NA	-69055	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.005000	0.417910	
mm_39366.1	chr5	9161786	9161986	+	1	NA	NA	NA	-110	NM_011806	23857	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0.120000	0.681592	
mm_44554.1	chr5	24601819	24602019	-	1	NA	NA	NA	83	NM_025891	66993	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.050000	0.611940	
mm_123309.1	chr14	62293134	62293334	-	1	NA	NA	NA	-255	NM_173419	239133	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.035000	0.572139	
mm_136506.1	chr16	96968834	96969034	-	1	NA	NA	NA	201801	NM_031174	13508	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	Down syndrome cell adhesion molecule	protein-coding	0.005000	0.363184	
mm_60094.1	chr7	35056656	35056856	+	1	NA	NA	NA	-190	NM_009884	12611	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.095000	0.691542	
mm_129036.1	chr15	74995002	74995202	-	1	NA	NA	NA	2929	NM_001271417	110454	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	0.000000	0.472637	-28(GCCTTTATAGCC,+,0.00)
mm_119214.1	chr14	33193938	33194138	+	1	NA	NA	NA	-8972	NM_001146022	545030	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.000000	0.522388	57(AACCCTTAAAGG,-,0.00),58(ACCCTTAAAGGG,-,0.00),59(CCCTTAAAGGGC,+,0.00),60(CCTTAAAGGGCT,+,0.00)
mm_115980.1	chr13	24257703	24257903	-	1	NA	NA	NA	22987	NM_001311122	68732	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0.005000	0.437811	
mm_32695.1	chr4	116017174	116017374	+	1	NA	NA	NA	628	NM_010173	14073	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	0.060000	0.572139	
mm_154725.1	chrX	9436538	9436738	+	1	NA	NA	NA	32686	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.015000	0.442786	
mm_118182.1	chr13	107022173	107022373	-	1	NA	NA	NA	-159	NM_008442	16563	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	0.200000	0.845771	
mm_13079.1	chr2	91205936	91206136	+	1	NA	NA	NA	3124	NM_007387	11432	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.015000	0.477612	
mm_21257.1	chr2	156347886	156348086	-	1	NA	NA	NA	-35282	NM_020255	19018	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	0.035000	0.462687	
mm_41328.1	chr5	90476422	90476622	+	1	NA	NA	NA	-14192	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.000000	0.348259	
mm_124023.1	chr14	76556787	76556987	-	1	NA	NA	NA	2	NR_027699	72661	Mm.320384	NM_001160326	ENSMUSG00000052584	Serp2	2810032E02Rik	stress-associated endoplasmic reticulum protein family member 2	protein-coding	0.115000	0.716418	
mm_90915.1	chr10	12548408	12548608	-	1	NA	NA	NA	313227	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.000000	0.417910	
mm_157586.1	chrX	53070473	53070673	-	1	NA	NA	NA	-13383	NR_038184	72575	Mm.59516	NR_038184		C430049B03Rik	2700063P19Rik|9430052C07Rik|mir-322|mir-351|mir-503	RIKEN cDNA C430049B03 gene	ncRNA	0.050000	0.532338	
mm_149365.1	chr19	11333122	11333322	+	1	NA	NA	NA	1473	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.000000	0.402985	
mm_87058.1	chr10	28843850	28844050	+	1	NA	NA	NA	79557	NR_033601	114676	Mm.390292	NR_033601		4930519F09Rik	-	pyruvate dehydrogenase E1 alpha 1 pseudogene	pseudo	0.000000	0.442786	-13(GCATTTATAGGT,+,0.00)
mm_29208.1	chr3	106789940	106790140	-	1	NA	NA	NA	109	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.010000	0.412935	
mm_32089.1	chr4	98437093	98437293	+	1	NA	NA	NA	41367	NM_172696	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.020000	0.462687	
mm_98495.1	chr11	94951570	94951770	+	1	NA	NA	NA	15446	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.015000	0.482587	
mm_146077.1	chr18	70580616	70580816	+	1	NA	NA	NA	12424	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.010000	0.422886	
mm_39790.1	chr5	30587300	30587500	+	1	NA	NA	NA	-770	NM_010608	16527	Mm.439936	NM_010608	ENSMUSG00000049265	Kcnk3	TASK|Task-1|cTBAK-1	potassium channel, subfamily K, member 3	protein-coding	0.005000	0.532338	
mm_52020.1	chr6	94672619	94672819	+	1	NA	NA	NA	27426	NM_008377	16206	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.005000	0.442786	70(AGCTCTATAAGG,-,0.00)
mm_99762.1	chr11	106788538	106788738	+	1	NA	NA	NA	-144	NM_007840	13207	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0.115000	0.701493	
mm_3346.1	chr1	138137295	138137495	+	1	NA	NA	NA	37731	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.353234	
mm_124094.1	chr14	79199082	79199282	-	1	NA	NA	NA	48185	NM_001033215	105590	Mm.486536	NM_001033215	ENSMUSG00000071262	Zfp957	AU017455	zinc finger protein 957	protein-coding	0.010000	0.577114	
mm_161754.1	chr17	35122937	35123137	+	1	NA	NA	NA	85	NM_032460	81845	Mm.7405	NM_032460	ENSMUSG00000092417	Gpank1	Bat-4|Bat4|D17H6S54E|G5	G patch domain and ankyrin repeats 1	protein-coding	0.020000	0.537313	
mm_155868.1	chrX	101384349	101384549	+	1	NA	NA	NA	717	NM_001302497	14618	Mm.21198	NM_008124	ENSMUSG00000047797	Gjb1	Cnx32|Cx32|connexin-32	gap junction protein, beta 1	protein-coding	0.030000	0.532338	
mm_31165.1	chr4	43443046	43443246	+	1	NA	NA	NA	869	NM_011571	21754	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.155000	0.845771	
mm_1544.1	chr1	72852119	72852319	+	1	NA	NA	NA	22646	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.020000	0.577114	
mm_40362.1	chr5	48050449	48050649	+	1	NA	NA	NA	67394	NM_001291228	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding	0.015000	0.402985	
mm_26640.1	chr3	153675295	153675495	+	1	NA	NA	NA	49738	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.040000	0.587065	
mm_66553.1	chr7	45212029	45212229	-	1	NA	NA	NA	-246	NM_015789	50722	Mm.27287	NM_015789	ENSMUSG00000030792	Dkkl1	AI414495|SGY|SGY-1|SGY1|Soggy|mSgy	dickkopf-like 1	protein-coding	0.040000	0.492537	
mm_143386.1	chr17	67993085	67993285	-	1	NA	NA	NA	10923	NM_172964	268970	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0.000000	0.253731	
mm_99151.1	chr11	100575706	100575906	+	1	NA	NA	NA	-85	NM_001146318	12799	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.005000	0.572139	
mm_33269.1	chr4	127968391	127968591	+	1	NA	NA	NA	2350	NM_001134733	635169	Mm.346755	NM_001134733	ENSMUSG00000028813	CK137956	-	cDNA sequence CK137956	protein-coding	0.020000	0.507463	
mm_19239.1	chr2	84715169	84715369	-	1	NA	NA	NA	-105	NM_144887	228136	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0.160000	0.731343	
mm_40877.1	chr5	74337606	74337806	+	1	NA	NA	NA	142380	NM_026878	68939	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	0.005000	0.547264	
mm_169636.1	chr15	47539955	47540155	+	1	NA	NA	NA	916750	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0.065000	0.527363	
mm_71425.1	chr8	46491003	46491203	+	1	NA	NA	NA	137	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.020000	0.562189	
mm_63791.1	chr7	132633822	132634022	+	1	NA	NA	NA	23279	NM_029609	76429	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.010000	0.502488	
mm_115171.1	chr13	108045561	108045761	+	1	NA	NA	NA	1187	NM_001048250	75616	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	0.005000	0.318408	
mm_36228.1	chr4	62733346	62733546	-	1	NA	NA	NA	59472	NM_001310706	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.005000	0.517413	
mm_123172.1	chr14	57525362	57525562	-	1	NA	NA	NA	633	NM_145837	239114	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	0.160000	0.800995	
mm_128692.1	chr15	62039046	62039246	-	1	NA	NA	NA	-111	NR_132746	19296	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	plasmacytoma variant translocation 1	ncRNA	0.000000	0.517413	
mm_91505.1	chr10	37136493	37136693	-	1	NA	NA	NA	2333	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.120000	0.646766	
mm_56031.1	chr6	86609252	86609452	-	1	NA	NA	NA	-18822	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.010000	0.497512	
mm_46256.1	chr5	99327111	99327311	-	1	NA	NA	NA	-74284	NM_145839	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.005000	0.457711	
mm_13758.1	chr2	118126756	118126956	+	1	NA	NA	NA	14980	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.010000	0.273632	
mm_101345.1	chr11	23633512	23633712	-	1	NA	NA	NA	19	NM_001347242	71675	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	0.165000	0.786070	
mm_27817.1	chr3	78762362	78762562	-	1	NA	NA	NA	382425	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.432836	
mm_125219.1	chr15	34083211	34083411	+	1	NA	NA	NA	592	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.100000	0.651741	
mm_114805.1	chr13	91461020	91461220	+	1	NA	NA	NA	23	NM_024186	66970	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.080000	0.676617	
mm_5133.1	chr1	9700223	9700423	-	1	NA	NA	NA	-114	NM_008651	17864	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	0.140000	0.751244	
mm_171362.1	chr4	117202425	117202625	+	1	NA	NA	NA	-19901	NM_134471	73804	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.050000	0.432836	
mm_141376.1	chr17	29056641	29056841	-	1	NA	NA	NA	22385	NR_036469	100504267	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|OTTMUSG00000031656|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0.010000	0.462687	0(GCATTTAAAAGG,-,0.00)
mm_99604.1	chr11	104573449	104573649	+	1	NA	NA	NA	-11351	NR_130177	100415912	Mm.446786	NR_130177		Gm11665	Gm11664|OTTMUSG00000003182|OTTMUSG00000003183	predicted gene 11665	ncRNA	0.015000	0.497512	-29(TGGCTTAAAAAG,-,0.00),-27(GCTTAAAAAGTC,+,0.00)
mm_58309.1	chr6	146213115	146213315	-	1	NA	NA	NA	279068	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.010000	0.318408	
mm_141009.1	chr17	24997766	24997966	-	1	NA	NA	NA	17364	NM_020608	57354	Mm.328854	NM_020608	ENSMUSG00000038002	Cramp1l	5830477H08Rik|AI256853|AI790734|Cramp1|Tce4|mKIAA1426	Crm, cramped-like (Drosophila)	protein-coding	0.005000	0.472637	
mm_146486.1	chr18	90510179	90510379	+	1	NA	NA	NA	125	NM_198295	67988	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.100000	0.696517	
mm_131914.1	chr16	23307824	23308024	+	1	NA	NA	NA	17454	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.010000	0.437811	
mm_144992.1	chr18	38296645	38296845	+	1	NA	NA	NA	-60	NM_001164621	56736	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	0.095000	0.696517	
mm_43932.1	chr5	145104358	145104558	+	1	NA	NA	NA	-9798	NM_023142	11867	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.025000	0.517413	
mm_90685.1	chr10	128922490	128922690	+	1	NA	NA	NA	934	NM_015740	14533	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	0.030000	0.542289	
mm_64094.1	chr7	140976299	140976499	+	1	NA	NA	NA	8323	NM_001112715	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding	0.015000	0.512438	
mm_24600.1	chr3	93445282	93445482	+	1	NA	NA	NA	3052	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.055000	0.567164	
mm_166727.1	chr6	122308964	122309164	+	1	NA	NA	NA	54	NM_010749	17113	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	0.075000	0.631841	
mm_162158.1	chrX	89752179	89752379	+	1	NA	NA	NA	11	NM_001085511	245509	Mm.297700	NM_001085511	ENSMUSG00000079513	4932429P05Rik	-	RIKEN cDNA 4932429P05 gene	protein-coding	0.000000	0.417910	
mm_52506.1	chr6	115360884	115361084	+	1	NA	NA	NA	33	NM_001127330	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.165000	0.845771	
mm_152490.1	chr19	11055551	11055751	-	1	NA	NA	NA	-5085	NR_102366	107350	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.000000	0.393035	
mm_109653.1	chr12	112862070	112862270	+	1	NA	NA	NA	-1254	NM_019925	56696	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.020000	0.527363	
mm_7658.1	chr1	128404475	128404675	-	1	NA	NA	NA	12841	NM_177445	226414	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	0.015000	0.368159	
mm_69870.1	chr7	141468568	141468768	-	1	NA	NA	NA	-121	NM_001111050	12476	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0.015000	0.567164	
mm_160727.1	chr10	75822314	75822514	-	1	NA	NA	NA	129	NM_029472	75886	Mm.268996	NM_029472	ENSMUSG00000009093	Gstt4	4930583C14Rik|AI507011	glutathione S-transferase, theta 4	protein-coding	0.030000	0.562189	
mm_62808.1	chr7	112953865	112954065	+	1	NA	NA	NA	3	NM_175279	78748	Mm.349943	NM_175279	ENSMUSG00000098132	Rassf10	4632411J06Rik	Ras association (RalGDS/AF-6) domain family (N-terminal) member 10	protein-coding	0.090000	0.696517	
mm_130472.1	chr15	98727412	98727612	-	1	NA	NA	NA	686	NM_024169	66120	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.045000	0.567164	
mm_138472.1	chr17	35194232	35194432	+	1	NA	NA	NA	-175	NM_008518	16994	Mm.1715	NM_008518	ENSMUSG00000024399	Ltb	AI662801|LTbeta|Tnfc|Tnfsf3|Tnlg1c|p33	lymphotoxin B	protein-coding	0.020000	0.592040	
mm_99751.1	chr11	106688571	106688771	+	1	NA	NA	NA	26610	NM_001305158	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.010000	0.517413	
mm_160367.1	chr8	25694026	25694226	+	1	NA	NA	NA	-25922	NR_121642	71910	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	0.015000	0.477612	
mm_56904.1	chr6	119196474	119196674	-	1	NA	NA	NA	-165	NM_001255999	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.010000	0.557214	
mm_55906.1	chr6	83703431	83703631	-	1	NA	NA	NA	7275	NR_075094	574519	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	0.040000	0.572139	
mm_5935.1	chr1	55363338	55363538	-	1	NA	NA	NA	31	NM_029267	75388	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	bol, boule-like (Drosophila)	protein-coding	0.160000	0.781095	
mm_73906.1	chr8	119465191	119465391	+	1	NA	NA	NA	18572	NM_054095	117148	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	0.010000	0.606965	
mm_141538.1	chr17	31855734	31855934	-	1	NA	NA	NA	-42	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.195000	0.825871	
mm_99779.1	chr11	107335822	107336022	+	1	NA	NA	NA	134798	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.020000	0.497512	
mm_22696.1	chr3	17948343	17948543	+	1	NA	NA	NA	-1	NM_029289	75439	Mm.27023	NM_029289	ENSMUSG00000027564	Cypt12	1700001F04Rik|AV209098	cysteine-rich perinuclear theca 12	protein-coding	0.025000	0.567164	
mm_38665.1	chr4	144463682	144463882	-	1	NA	NA	NA	-26	NM_001085503	230883	Mm.457844	NM_001085503	ENSMUSG00000078507	Aadacl3	Gm435	arylacetamide deacetylase-like 3	protein-coding	0.010000	0.522388	
mm_50695.1	chr6	51597646	51597846	+	1	NA	NA	NA	53223	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.005000	0.393035	41(CTTCTTAAAAGC,-,0.00)
mm_97726.1	chr11	80386422	80386622	+	1	NA	NA	NA	3243	NM_001130171	22680	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0.010000	0.417910	
mm_129847.1	chr15	83166031	83166231	-	1	NA	NA	NA	6077	NM_029787	109754	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.050000	0.587065	
mm_54899.1	chr6	47454754	47454954	-	1	NA	NA	NA	530	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.100000	0.701493	
mm_50005.1	chr6	41058306	41058506	+	1	NA	NA	NA	-22897	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.467662	
mm_78841.1	chr9	44326933	44327133	+	1	NA	NA	NA	188	NM_007875	13478	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	0.080000	0.666667	
mm_32320.1	chr4	103619437	103619637	+	1	NA	NA	NA	237037	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA	0.055000	0.606965	
mm_103094.1	chr11	69921135	69921335	-	1	NA	NA	NA	40	NM_001166595	276770	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.145000	0.731343	
mm_41158.1	chr5	87929796	87929996	+	1	NA	NA	NA	4263	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.000000	0.452736	
mm_30032.1	chr3	135691168	135691368	-	1	NA	NA	NA	279	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.215000	0.880597	
mm_14126.1	chr2	126034465	126034665	+	1	NA	NA	NA	-93	NM_008008	14178	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0.030000	0.457711	
mm_116108.1	chr13	28949487	28949687	-	1	NA	NA	NA	4095	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.020000	0.328358	-87(TGCTTTAAAAAA,-,0.00)
mm_20462.1	chr2	129367239	129367439	-	1	NA	NA	NA	-2563	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.020000	0.472637	
mm_80991.1	chr9	103367457	103367657	+	1	NA	NA	NA	-1777	NM_001134426	321022	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.000000	0.482587	
mm_114939.1	chr13	96388263	96388463	+	1	NA	NA	NA	69	NM_026173	67463	Mm.86472	NM_026173	ENSMUSG00000021671	Poc5	1200014M14Rik|AV144706	POC5 centriolar protein	protein-coding	0.080000	0.601990	
mm_50737.1	chr6	52714356	52714556	+	1	NA	NA	NA	727	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.070000	0.537313	
mm_71751.1	chr8	65639266	65639466	+	1	NA	NA	NA	20841	NM_175188	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.005000	0.442786	84(GTCTTTTAAAAA,-,0.00)
mm_137870.1	chr17	31386162	31386362	+	1	NA	NA	NA	28	NM_001163748	18585	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	0.100000	0.706468	
mm_166489.1	chr5	149053122	149053322	+	1	NA	NA	NA	-165	NM_010439	15289	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.090000	0.661692	
mm_38927.1	chr4	150189054	150189254	-	1	NA	NA	NA	11981	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.015000	0.482587	
mm_50057.1	chr6	41178395	41178595	+	1	NA	NA	NA	-123777	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.010000	0.497512	
mm_152152.1	chr19	7232893	7233093	-	1	NA	NA	NA	8229	NM_027643	70999	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	0.010000	0.437811	
mm_36283.1	chr4	63860938	63861138	-	1	NA	NA	NA	246	NM_009403	21949	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.020000	0.582090	-34(GACTATATAAAG,-,0.00)
mm_24056.1	chr3	87914832	87915032	+	1	NA	NA	NA	-4612	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.010000	0.606965	
mm_123883.1	chr14	72709726	72709926	-	1	NA	NA	NA	177	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.125000	0.746269	
mm_2393.1	chr1	93635090	93635290	+	1	NA	NA	NA	537	NM_021537	59041	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.115000	0.711443	
mm_119495.1	chr14	47379953	47380153	+	1	NA	NA	NA	6193	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.010000	0.517413	
mm_57709.1	chr6	128599965	128600165	-	1	NA	NA	NA	-18459	NM_001001179	232400	Mm.259234	NM_001001179	ENSMUSG00000047228	BC048546	Ovos	cDNA sequence BC048546	protein-coding	0.005000	0.477612	-33(ATCTATATAAGG,-,0.00)
mm_106889.1	chr12	8012096	8012296	+	1	NA	NA	NA	34519	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.447761	
mm_129272.1	chr15	77021860	77022060	-	1	NA	NA	NA	767	NM_001164048	17189	Mm.404074	NM_013593	ENSMUSG00000018893	Mb	AI325109	myoglobin	protein-coding	0.005000	0.502488	
mm_125091.1	chr15	27466750	27466950	+	1	NA	NA	NA	173	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.125000	0.741294	
mm_120626.1	chr14	70457514	70457714	+	1	NA	NA	NA	97	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.070000	0.626866	
mm_72266.1	chr8	75097140	75097340	+	1	NA	NA	NA	3622	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.025000	0.537313	
mm_16461.1	chr2	180598139	180598339	+	1	NA	NA	NA	17	NM_009936	12841	Mm.141312	NM_009936	ENSMUSG00000027570	Col9a3	AV006866	collagen, type IX, alpha 3	protein-coding	0.105000	0.786070	
mm_13575.1	chr2	112361601	112361801	+	1	NA	NA	NA	6326	NM_026519	68032	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	0.005000	0.358209	
mm_159674.1	chr4	155222225	155222425	-	1	NA	NA	NA	210	NM_011385	20481	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.135000	0.761194	
mm_89585.1	chr10	95778852	95779052	+	1	NA	NA	NA	-161711	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.020000	0.472637	
mm_45164.1	chr5	50543434	50543634	-	1	NA	NA	NA	290772	NR_106197	102465903		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA	0.000000	0.373134	73(TGCCATAAAGAG,-,0.00)
mm_25882.1	chr3	130817817	130818017	+	1	NA	NA	NA	-87519	NM_001005859	68436	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.005000	0.487562	
mm_27133.1	chr3	32365567	32365767	-	1	NA	NA	NA	-2	NM_009517	22401	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0.125000	0.716418	
mm_160937.1	chr11	94443177	94443377	-	1	NA	NA	NA	30921	NM_001177888	12291	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0.050000	0.616915	
mm_85530.1	chr9	106476237	106476437	-	1	NA	NA	NA	612	NM_001311150	235587	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	0.000000	0.507463	
mm_72884.1	chr8	89015753	89015953	+	1	NA	NA	NA	-8882	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.020000	0.472637	
mm_47183.1	chr5	120753810	120754010	-	1	NA	NA	NA	-4062	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.005000	0.328358	
mm_154028.1	chr19	53424636	53424836	-	1	NA	NA	NA	-34163	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	0.035000	0.587065	
mm_95194.1	chr11	43068315	43068515	+	1	NA	NA	NA	-81462	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding	0.010000	0.482587	-33(GACCATATAAGG,-,0.00),-31(CCATATAAGGAC,+,0.00)
mm_107455.1	chr12	37108524	37108724	+	1	NA	NA	NA	78	NM_008584	17286	Mm.341398	NM_008584	ENSMUSG00000036144	Meox2	AI528662|Gax|Mox-2|Mox2	mesenchyme homeobox 2	protein-coding	0.040000	0.547264	
mm_123361.1	chr14	63142941	63143141	-	1	NA	NA	NA	20579	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.005000	0.393035	
mm_169189.1	chr13	66027499	66027699	+	1	NA	NA	NA	-85854	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.020000	0.532338	
mm_28518.1	chr3	92584410	92584610	-	1	NA	NA	NA	4514	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.010000	0.477612	
mm_142572.1	chr17	46678536	46678736	-	1	NA	NA	NA	-1817	NM_001277310	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.010000	0.621891	
mm_47664.1	chr5	126504862	126505062	-	1	NA	NA	NA	-525827	NR_040685	71247	Mm.399586	NR_040685	ENSMUSG00000105490	4933438B17Rik	-	RIKEN cDNA 4933438B17 gene	ncRNA	0.000000	0.388060	
mm_146982.1	chr18	33890477	33890677	-	1	NA	NA	NA	95685	NR_038151	69749	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.030000	0.502488	
mm_120956.1	chr14	77473773	77473973	+	1	NA	NA	NA	32995	NR_033141	629678	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	0.005000	0.487562	-33(TCTTATAAAAGG,-,0.00)
mm_139084.1	chr17	46751872	46752072	+	1	NA	NA	NA	242	NM_001305989	72029	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	0.075000	0.731343	
mm_8035.1	chr1	135167477	135167677	-	1	NA	NA	NA	104	NM_134438	171469	Mm.272290	NM_134438	ENSMUSG00000026424	Gpr37l1	AW047233|CAG-18|D0Kist8	G protein-coupled receptor 37-like 1	protein-coding	0.025000	0.651741	
mm_140484.1	chr17	3115614	3115814	-	1	NA	NA	NA	742	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.070000	0.681592	
mm_93302.1	chr10	96722552	96722752	-	1	NA	NA	NA	105651	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.025000	0.567164	
mm_159295.1	chr2	175206778	175206978	-	1	NA	NA	NA	39	NM_001164689	626832	Mm.441314	NM_001164689	ENSMUSG00000078887	Gm6710	1600017I02Rik|2310011F05Rik|2900089K14Rik|3100002L24Rik|WF-4	predicted gene 6710	protein-coding	0.015000	0.502488	
mm_45537.1	chr5	72763697	72763897	-	1	NA	NA	NA	-11020	NM_001122754	22165	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.015000	0.497512	
mm_82160.1	chr9	123781334	123781534	+	1	NA	NA	NA	14223	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.000000	0.383085	
mm_6874.1	chr1	84284737	84284937	-	1	NA	NA	NA	-192	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.015000	0.606965	
mm_50204.1	chr6	42245842	42246042	+	1	NA	NA	NA	7	NM_029555	76263	Mm.267014	NM_029555	ENSMUSG00000029864	Gstk1	0610025I19Rik|AW260476|DsbA-L	glutathione S-transferase kappa 1	protein-coding	0.065000	0.616915	-75(CCCTATAGGGCG,+,0.00)
mm_54022.1	chr6	8778034	8778234	-	1	NA	NA	NA	350	NM_010492	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.115000	0.756219	
mm_86677.1	chr10	18234942	18235142	+	1	NA	NA	NA	-61	NM_144820	215814	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	0.075000	0.616915	
mm_27710.1	chr3	67515540	67515740	-	1	NA	NA	NA	-117	NM_001164763	109222	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	0.060000	0.631841	
mm_102767.1	chr11	68095885	68096085	-	1	NA	NA	NA	-124907	NR_105833	102465219		NR_105833	ENSMUSG00000099174	Mir6406	Gm27981|mmu-mir-6406	microRNA 6406	ncRNA	0.010000	0.492537	
mm_65367.1	chr7	25072308	25072508	-	1	NA	NA	NA	-39	NM_008168	14809	Mm.2879	NM_008168	ENSMUSG00000003378	Grik5	GluK5|GluRgamma2|KA2	glutamate receptor, ionotropic, kainate 5 (gamma 2)	protein-coding	0.040000	0.691542	
mm_120456.1	chr14	65970431	65970631	+	1	NA	NA	NA	2048	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.015000	0.562189	51(GCCTATTAATGA,-,0.00)
mm_145387.1	chr18	57133298	57133498	+	1	NA	NA	NA	308	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.045000	0.626866	
mm_163950.1	chr14	52623734	52623934	+	1	NA	NA	NA	-128139	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.000000	0.293532	11(ACCCTTAAAAGG,-,0.00),12(CCCTTAAAAGGT,+,0.00),13(CCTTAAAAGGTA,+,0.00)
mm_17016.1	chr2	18970382	18970582	-	1	NA	NA	NA	27639	NM_008845	18718	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.010000	0.532338	
mm_145482.1	chr18	60379368	60379568	+	1	NA	NA	NA	3439	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.000000	0.393035	
mm_19266.1	chr2	84886926	84887126	-	1	NA	NA	NA	-334	NM_199223	269295	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0.105000	0.716418	
mm_21678.1	chr2	164426054	164426254	-	1	NA	NA	NA	17034	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.055000	0.542289	
mm_82798.1	chr9	29412382	29412582	-	1	NA	NA	NA	550647	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.140000	0.756219	
mm_143730.1	chr17	81385338	81385538	-	1	NA	NA	NA	-320353	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.015000	0.432836	-77(GTGCTTAAATGG,-,0.00),-75(GCTTAAATGGCC,+,0.00)
mm_57445.1	chr6	124965414	124965614	-	1	NA	NA	NA	15	NM_001164089	26894	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e	COP9 signalosome subunit 7A	protein-coding	0.140000	0.746269	
mm_14419.1	chr2	130450239	130450439	+	1	NA	NA	NA	61	NM_001163688	19262	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	0.120000	0.716418	
mm_145776.1	chr18	65050921	65051121	+	1	NA	NA	NA	27494	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.010000	0.517413	
mm_145310.1	chr18	53862231	53862431	+	1	NA	NA	NA	218	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.135000	0.691542	
mm_170212.1	chr17	70963648	70963848	+	1	NA	NA	NA	26768	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.020000	0.487562	
mm_4972.1	chr1	191299454	191299654	+	1	NA	NA	NA	18564	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.010000	0.537313	
mm_149233.1	chr19	10182845	10183045	+	1	NA	NA	NA	57	NM_146094	76267	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0.160000	0.751244	
mm_135655.1	chr16	52400451	52400651	-	1	NA	NA	NA	52530	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.383085	
mm_120109.1	chr14	59440477	59440677	+	1	NA	NA	NA	303	NM_001320725	107303348		NM_001320725		Setdb2-phf11c	-	Setdb2-Phf11c readthrough	protein-coding	0.025000	0.442786	
mm_82886.1	chr9	32541228	32541428	-	1	NA	NA	NA	124	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.065000	0.582090	
mm_102821.1	chr11	69012353	69012553	-	1	NA	NA	NA	-3458	NM_001281465	68964	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	0.035000	0.527363	
mm_155542.1	chrX	74307090	74307290	+	1	NA	NA	NA	2178	NM_010273	14567	Mm.205830	NM_010273	ENSMUSG00000015291	Gdi1	GDIA|GDIalpha	guanosine diphosphate (GDP) dissociation inhibitor 1	protein-coding	0.010000	0.477612	-15(TTGTATATAAGG,-,0.00)
mm_88702.1	chr10	80147751	80147951	+	1	NA	NA	NA	-421	NM_001305798	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.035000	0.601990	
mm_154765.1	chrX	12136013	12136213	+	1	NA	NA	NA	24233	NR_045434	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.040000	0.582090	-22(CTCTTTAAATAG,-,0.00)
mm_61336.1	chr7	68277435	68277635	+	1	NA	NA	NA	-941	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.025000	0.492537	
mm_67917.1	chr7	99858202	99858402	-	1	NA	NA	NA	581	NM_025668	66624	Mm.30043	NM_025668	ENSMUSG00000035227	Spcs2	5730406I15Rik|AA408713|mKIAA0102	signal peptidase complex subunit 2 homolog (S. cerevisiae)	protein-coding	0.015000	0.368159	-38(GGCCTTTAAAGT,-,0.00),-37(GCCTTTAAAGTT,+,0.00),-28(GTTTTTAAGGGT,+,0.00)
mm_26823.1	chr3	10335598	10335798	-	1	NA	NA	NA	-42	NM_001010834	241877	Mm.442146	NM_001010834	ENSMUSG00000058921	Slc10a5	Gm405|mP5	solute carrier family 10 (sodium/bile acid cotransporter family), member 5	protein-coding	0.015000	0.398010	
mm_24017.1	chr3	87525508	87525708	+	1	NA	NA	NA	30	NM_012051	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.125000	0.721393	
mm_111563.1	chr12	101222022	101222222	-	1	NA	NA	NA	76513	NR_033653	74947	Mm.488905	NR_033653	ENSMUSG00000092054	Kif4-ps	4930463M05Rik|Kif4b	kinesin family member 4, pseudogene	pseudo	0.035000	0.542289	
mm_19935.1	chr2	116065627	116065827	-	1	NA	NA	NA	-669	NM_010825	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.100000	0.646766	
mm_46079.1	chr5	92326695	92326895	-	1	NA	NA	NA	1284	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.025000	0.482587	
mm_108050.1	chr12	73909516	73909716	+	1	NA	NA	NA	1749	NM_001313919	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.005000	0.353234	
mm_130206.1	chr15	95528147	95528347	-	1	NA	NA	NA	5	NM_001289653	54003	Mm.3959	NM_016743	ENSMUSG00000022454	Nell2	A330108N19Rik|R75516|mel91	NEL-like 2	protein-coding	0.150000	0.776119	
mm_164700.1	chr17	49957442	49957642	+	1	NA	NA	NA	232955	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.005000	0.353234	-66(GTTTTTATATAC,+,0.00)
mm_166487.1	chr5	147860403	147860603	-	1	NA	NA	NA	-125	NM_025624	66537	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.090000	0.696517	
mm_83167.1	chr9	40489663	40489863	-	1	NA	NA	NA	-33999	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.015000	0.487562	
mm_167379.1	chr8	94102181	94102381	+	1	NA	NA	NA	-3470	NM_026116	67378	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	0.005000	0.412935	
mm_169792.1	chr16	15315288	15315488	+	1	NA	NA	NA	279130	NM_001159351	70620	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	0.035000	0.472637	-45(GTCCCTTTAAGG,-,0.00),-43(CCCTTTAAGGTA,+,0.00)
mm_64249.1	chr7	141704293	141704493	+	1	NA	NA	NA	14053	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.010000	0.417910	
mm_148822.1	chr19	6299677	6299877	+	1	NA	NA	NA	-6680	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.005000	0.587065	
mm_7938.1	chr1	133914639	133914839	-	1	NA	NA	NA	6662	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.035000	0.572139	
mm_101551.1	chr11	33754950	33755150	-	1	NA	NA	NA	88535	NM_027398	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.045000	0.532338	
mm_26513.1	chr3	145891552	145891752	+	1	NA	NA	NA	-32610	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.010000	0.472637	
mm_98019.1	chr11	84944818	84945018	+	1	NA	NA	NA	-12836	NM_007607	12351	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	0.010000	0.522388	-98(CCCTTTATAGTG,+,0.00)
mm_100699.1	chr11	3533392	3533592	-	1	NA	NA	NA	5800	NM_013870	29856	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.055000	0.611940	
mm_61411.1	chr7	73539271	73539471	+	1	NA	NA	NA	2375	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.005000	0.412935	
mm_138305.1	chr17	34643867	34644067	+	1	NA	NA	NA	-916	NM_019873	56299	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0.015000	0.507463	
mm_80682.1	chr9	91365864	91366064	+	1	NA	NA	NA	-165	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.110000	0.656716	
mm_43387.1	chr5	135733191	135733391	+	1	NA	NA	NA	2598	NR_106001	102466791		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.005000	0.542289	
mm_136971.1	chr17	15745685	15745885	+	1	NA	NA	NA	40818	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.000000	0.303483	
mm_151072.1	chr19	47513253	47513453	+	1	NA	NA	NA	371	NR_045322	100503104	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0.025000	0.517413	
mm_29225.1	chr3	107212759	107212959	-	1	NA	NA	NA	8873	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.467662	
mm_98618.1	chr11	95843714	95843914	+	1	NA	NA	NA	569	NM_001284397	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.010000	0.517413	
mm_82348.1	chr9	13826859	13827059	-	1	NA	NA	NA	94	NR_037622	74360	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding	0.095000	0.646766	
mm_136820.1	chr17	12410817	12411017	+	1	NA	NA	NA	32308	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.025000	0.492537	-3(ACTTTAATAGCC,+,0.00)
mm_45885.1	chr5	88522445	88522645	-	1	NA	NA	NA	5352	NM_152839	16069	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	0.005000	0.383085	
mm_128433.1	chr15	50682403	50682603	-	1	NA	NA	NA	206546	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.368159	
mm_154548.1	chrM	14779	14979	-	1	NA	NA	NA	NA	NA									0.010000	0.368159	
mm_102931.1	chr11	69600761	69600961	-	1	NA	NA	NA	5099	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.010000	0.497512	
mm_13100.1	chr2	91265117	91265317	+	1	NA	NA	NA	102	NM_023854	77038	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0.130000	0.686567	
mm_132085.1	chr16	30535975	30536175	+	1	NA	NA	NA	14503	NM_172614	224090	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0.005000	0.393035	
mm_96131.1	chr11	60837752	60837952	+	1	NA	NA	NA	7221	NM_145428	216820	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.020000	0.537313	
mm_81505.1	chr9	110034573	110034773	+	1	NA	NA	NA	-17348	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.020000	0.462687	
mm_132257.1	chr16	32753393	32753593	+	1	NA	NA	NA	17607	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.005000	0.472637	
mm_147085.1	chr18	35629730	35629930	-	1	NA	NA	NA	-2603	NM_011397	20522	Mm.22702	NM_011397	ENSMUSG00000024354	Slc23a1	D18Ucla2|SVCT1|Slc23a2|YSPL3	solute carrier family 23 (nucleobase transporters), member 1	protein-coding	0.040000	0.631841	
mm_73081.1	chr8	94479792	94479992	+	1	NA	NA	NA	7129	NM_001033207	434341	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	0.010000	0.542289	
mm_20077.1	chr2	120604548	120604748	-	1	NA	NA	NA	4667	NM_025657	66606	Mm.428639	NM_025657	ENSMUSG00000027286	Lrrc57	2810002D13Rik|AA407405	leucine rich repeat containing 57	protein-coding	0.005000	0.368159	73(GTTTTTAGACAG,+,0.00)
mm_168490.1	chr11	49679009	49679209	-	1	NA	NA	NA	15514	NM_170727	68662	Mm.22802	NM_054037	ENSMUSG00000064057	Scgb3a1	HIN-1|LuLeu2|Pnsp2|UGRP2|Utgrp2	secretoglobin, family 3A, member 1	protein-coding	0.030000	0.472637	-65(TTGTATAAAAAG,-,0.00)
mm_104119.1	chr11	86741620	86741820	-	1	NA	NA	NA	15772	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.025000	0.363184	11(GGTTTTTAAAGG,-,0.00),12(GTTTTTAAAGGC,+,0.00)
mm_40809.1	chr5	71699799	71699999	+	1	NA	NA	NA	-117	NM_008069	14400	Mm.38567	NM_008069	ENSMUSG00000029212	Gabrb1	AW061132|B230208N19Rik|Gabrb-1	gamma-aminobutyric acid (GABA) A receptor, subunit beta 1	protein-coding	0.040000	0.487562	-72(GAACTTTAAAGG,-,0.00),-71(AACTTTAAAGGG,-,0.00)
mm_34078.1	chr4	138630442	138630642	+	1	NA	NA	NA	-6550	NM_029401	75718	Mm.251530	NM_029401	ENSMUSG00000028753	Vwa5b1	4931403E03Rik	von Willebrand factor A domain containing 5B1	protein-coding	0.005000	0.482587	
mm_17628.1	chr2	31035648	31035848	-	1	NA	NA	NA	53469	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.005000	0.383085	
mm_6625.1	chr1	77898342	77898542	-	1	NA	NA	NA	298694	NM_008781	18505	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	0.000000	0.343284	
mm_102032.1	chr11	51756336	51756536	-	1	NA	NA	NA	398	NM_001290785	77371	Mm.33878	NM_175255	ENSMUSG00000036391	Sec24a	-	Sec24 related gene family, member A (S. cerevisiae)	protein-coding	0.115000	0.771144	
mm_150721.1	chr19	43528267	43528467	+	1	NA	NA	NA	-3762	NM_010324	14718	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.010000	0.398010	
mm_52771.1	chr6	121210583	121210783	+	1	NA	NA	NA	-51	NM_017379	53857	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0.040000	0.661692	
mm_135343.1	chr16	42911984	42912184	-	1	NA	NA	NA	-14	NR_040402	100503040	Mm.490721	NR_040402		Gm19522	-	predicted gene, 19522	ncRNA	0.015000	0.427861	
mm_59055.1	chr7	19414093	19414293	+	1	NA	NA	NA	3099	NM_007710	12715	Mm.2375	NM_007710	ENSMUSG00000030399	Ckm	Ckmm|M-CK|MCK	creatine kinase, muscle	protein-coding	0.040000	0.552239	
mm_80076.1	chr9	69989404	69989604	+	1	NA	NA	NA	38	NM_001008238	12175	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	0.125000	0.711443	
mm_151965.1	chr19	5801653	5801853	-	1	NA	NA	NA	919	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.353234	
mm_145907.1	chr18	65803497	65803697	+	1	NA	NA	NA	3019	NM_025468	66286	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0.005000	0.368159	-6(TTTTTTAAACAC,+,0.00)
mm_44884.1	chr5	34653913	34654113	-	1	NA	NA	NA	6135	NM_029278	75416	Mm.40292	NM_029278	ENSMUSG00000036693	Nop14	2610033H07Rik|Nol14	NOP14 nucleolar protein	protein-coding	0.020000	0.457711	
mm_159097.1	chr2	36105085	36105285	-	1	NA	NA	NA	223	NM_001083125	16874	Mm.12881	NM_008500	ENSMUSG00000026890	Lhx6	Lhx6.1	LIM homeobox protein 6	protein-coding	0.110000	0.751244	
mm_17280.1	chr2	26122652	26122852	-	1	NA	NA	NA	59	NM_026495	67991	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.185000	0.820896	
mm_133917.1	chr16	97557930	97558130	+	1	NA	NA	NA	21947	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.000000	0.437811	-16(GCTCTTAGAGAG,+,0.00)
mm_94547.1	chr11	11114037	11114237	+	1	NA	NA	NA	121	NM_177033	319922	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0.075000	0.661692	
mm_27777.1	chr3	73636601	73636801	-	1	NA	NA	NA	71714	NM_009738	12038	Mm.250719	NM_009738	ENSMUSG00000027792	Bche	C730038G20Rik	butyrylcholinesterase	protein-coding	0.010000	0.388060	
mm_24274.1	chr3	89203979	89204179	+	1	NA	NA	NA	1154	NR_122037	14466	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	0.055000	0.577114	
mm_116730.1	chr13	51733633	51733833	-	1	NA	NA	NA	60014	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.005000	0.477612	
mm_131392.1	chr16	14218817	14219017	+	1	NA	NA	NA	55642	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.010000	0.497512	
mm_1587.1	chr1	74303178	74303378	+	1	NA	NA	NA	1058	NM_027154	69660	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.000000	0.432836	
mm_136925.1	chr17	13846662	13846862	+	1	NA	NA	NA	-85368	NM_022311	21646	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0.000000	0.353234	
mm_127172.1	chr15	98835851	98836051	+	1	NA	NA	NA	-4443	NM_016781	19082	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.020000	0.547264	
mm_47293.1	chr5	122241142	122241342	-	1	NA	NA	NA	23218	NR_104441	654470	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.005000	0.552239	
mm_55900.1	chr6	83575744	83575944	-	1	NA	NA	NA	-3340	NM_024239	70527	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0.010000	0.542289	
mm_39483.1	chr5	20882043	20882243	+	1	NA	NA	NA	-19	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.180000	0.815920	
mm_155714.1	chrX	96097433	96097633	+	1	NA	NA	NA	1488	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.010000	0.378109	
mm_49305.1	chr6	17762783	17762983	+	1	NA	NA	NA	13713	NM_022332	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.000000	0.363184	
mm_84395.1	chr9	65542257	65542457	-	1	NA	NA	NA	37730	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.010000	0.393035	
mm_41755.1	chr5	102845296	102845496	+	1	NA	NA	NA	389	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.055000	0.597015	28(TACCATAAAAGG,-,0.00)
mm_76362.1	chr8	84773304	84773504	-	1	NA	NA	NA	965	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.015000	0.432836	-79(CCCCTTTAAAAC,-,0.00),-77(CCTTTAAAACAT,+,0.00)
mm_112858.1	chr13	20842122	20842322	+	1	NA	NA	NA	48109	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.432836	
mm_23464.1	chr3	60472973	60473173	+	1	NA	NA	NA	243	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.010000	0.422886	-84(GGATTTATAAAG,-,0.00)
mm_113071.1	chr13	23763567	23763767	+	1	NA	NA	NA	-1	NM_030609	80838	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	0.055000	0.547264	-35(CTCTATAAATAC,-,0.00)
mm_170707.1	chr2	140955906	140956106	-	1	NA	NA	NA	-284530	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.015000	0.497512	
mm_164134.1	chr15	50176232	50176432	+	1	NA	NA	NA	712717	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.005000	0.383085	
mm_49431.1	chr6	29272574	29272774	+	1	NA	NA	NA	48	NM_023516	69573	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.085000	0.636816	
mm_876.1	chr1	52155135	52155335	+	1	NA	NA	NA	35613	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.005000	0.388060	
mm_159053.1	chr1	189762493	189762693	+	1	NA	NA	NA	34325	NM_008976	19250	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|OTTMUSG00000022087|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	0.020000	0.522388	-36(GGCTTTTTGAGG,-,0.00)
mm_111890.1	chr12	108275245	108275445	-	1	NA	NA	NA	72	NM_001159910	668158	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010	coiled-coil domain containing 85C	protein-coding	0.145000	0.820896	
mm_107974.1	chr12	72939781	72939981	+	1	NA	NA	NA	-1	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	0.070000	0.646766	
mm_33890.1	chr4	136180683	136180883	+	1	NA	NA	NA	1	NM_001305399	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.030000	0.567164	
mm_144266.1	chr18	11053233	11053433	+	1	NA	NA	NA	-766	NR_105023	68434	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0.055000	0.606965	
mm_121114.1	chr14	101840201	101840401	+	1	NA	NA	NA	-322	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.025000	0.507463	
mm_36898.1	chr4	107683484	107683684	-	1	NA	NA	NA	578	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.090000	0.711443	
mm_24786.1	chr3	95542973	95543173	+	1	NA	NA	NA	16287	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.025000	0.477612	-68(CTTTTTAGACCA,+,0.00)
mm_24363.1	chr3	90079542	90079742	+	1	NA	NA	NA	121	NM_001293749	59069	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0.095000	0.646766	
mm_157443.1	chrX	41335776	41335976	-	1	NA	NA	NA	-65425	NM_016886	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding	0.005000	0.447761	
mm_12958.1	chr2	90395040	90395240	+	1	NA	NA	NA	-5500	NM_146263	258330	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	0.070000	0.592040	
mm_16994.1	chr2	18308711	18308911	-	1	NA	NA	NA	84019	NM_001190817	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.005000	0.442786	
mm_61274.1	chr7	66733509	66733709	+	1	NA	NA	NA	-9895	NM_001164201	545975	Mm.380104	NM_001164201	ENSMUSG00000030510	Cers3	4930550L11Rik|Gm488|Lass3|T3L	ceramide synthase 3	protein-coding	0.065000	0.601990	
mm_156767.1	chrX	160530067	160530267	+	1	NA	NA	NA	27733	NM_001177878	110094	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	0.000000	0.368159	
mm_106834.1	chr12	8005986	8006186	+	1	NA	NA	NA	28409	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.487562	
mm_6086.1	chr1	63114214	63114414	-	1	NA	NA	NA	-47	NM_001114609	227195	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584|OTTMUSG00000002594	INO80 complex subunit D	protein-coding	0.105000	0.626866	
mm_112285.1	chr12	114456045	114456245	-	1	NA	NA	NA	13321	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.000000	0.462687	
mm_15400.1	chr2	156730529	156730729	+	1	NA	NA	NA	9350	NM_001042487	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.015000	0.472637	-38(CCCTTAAGGGAC,+,0.00)
mm_48362.1	chr5	139408400	139408600	-	1	NA	NA	NA	2113	NM_177000	319772	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.015000	0.577114	
mm_135182.1	chr16	35983152	35983352	-	1	NA	NA	NA	-111	NM_008465	16646	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0.130000	0.741294	
mm_107670.1	chr12	53252529	53252729	+	1	NA	NA	NA	3952	NM_013780	27386	Mm.247044	NM_013780	ENSMUSG00000021010	Npas3	4930423H22Rik|bHLHe12	neuronal PAS domain protein 3	protein-coding	0.195000	0.870647	
mm_66604.1	chr7	45459760	45459960	-	1	NA	NA	NA	26	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.065000	0.587065	-12(TGCTATAAAAGG,-,0.00)
mm_6785.1	chr1	84139834	84140034	-	1	NA	NA	NA	79027	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.338308	
mm_101054.1	chr11	8664474	8664674	-	1	NA	NA	NA	-39	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.145000	0.761194	
mm_73924.1	chr8	119828776	119828976	+	1	NA	NA	NA	11703	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.010000	0.467662	
mm_46148.1	chr5	93206394	93206594	-	1	NA	NA	NA	1	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.120000	0.641791	
mm_17446.1	chr2	28537425	28537625	-	1	NA	NA	NA	4061	NM_001145836	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.020000	0.527363	
mm_169883.1	chr16	43143031	43143231	-	1	NA	NA	NA	-104153	NM_181058	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.060000	0.641791	
mm_46194.1	chr5	98030493	98030693	-	1	NA	NA	NA	369	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.075000	0.721393	
mm_10414.1	chr2	13579920	13580120	+	1	NA	NA	NA	5709	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.025000	0.452736	-98(CCATTAAAAGAA,+,0.00)
mm_43847.1	chr5	143240288	143240488	+	1	NA	NA	NA	5225	NM_177681	231866	Mm.55211	NM_177681	ENSMUSG00000029587	Zfp12	C530015C18|Krox-7|Zfp-12|Znf12	zinc finger protein 12	protein-coding	0.015000	0.457711	
mm_55746.1	chr6	77979580	77979780	-	1	NA	NA	NA	-13	NM_009819	12386	Mm.34637	NM_009819	ENSMUSG00000063063	Ctnna2	AI481747|Catna|Catna2|cdf|chp	catenin (cadherin associated protein), alpha 2	protein-coding	0.140000	0.756219	
mm_129070.1	chr15	75664072	75664272	-	1	NA	NA	NA	14618	NM_028404	72960	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	0.035000	0.572139	
mm_123978.1	chr14	75179165	75179365	-	1	NA	NA	NA	42840	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.010000	0.427861	
mm_171678.1	chr4	53059115	53059315	-	1	NA	NA	NA	47335	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.045000	0.542289	
mm_23630.1	chr3	66219863	66220063	+	1	NA	NA	NA	76	NM_008987	19288	Mm.276776	NM_008987	ENSMUSG00000027832	Ptx3	AI607804|TSG-14	pentraxin related gene	protein-coding	0.055000	0.562189	
mm_156276.1	chrX	136836710	136836910	+	1	NA	NA	NA	14064	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.015000	0.497512	-88(GACTATTTAAGC,-,0.00)
mm_144535.1	chr18	25234219	25234419	+	1	NA	NA	NA	65299	NM_001033532	225289	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	0.000000	0.472637	
mm_128187.1	chr15	34679092	34679292	-	1	NA	NA	NA	-486	NM_145469	223473	Mm.258402	NM_145469	ENSMUSG00000038879	Nipal2	9330161F08Rik|Npal2	NIPA-like domain containing 2	protein-coding	0.015000	0.417910	
mm_167791.1	chr9	123923170	123923370	-	1	NA	NA	NA	45422	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.080000	0.606965	
mm_43850.1	chr5	143353607	143353807	+	1	NA	NA	NA	-3631	NM_001159321	170935	Mm.197460	NM_133355	ENSMUSG00000010825	Grid2ip	-	glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1	protein-coding	0.020000	0.572139	
mm_150231.1	chr19	33976374	33976574	+	1	NA	NA	NA	15226	NM_026334	67717	Mm.329816	NM_026334	ENSMUSG00000024768	Lipf	2310051B21Rik|AV082900	lipase, gastric	protein-coding	0.020000	0.487562	
mm_156613.1	chrX	153498113	153498313	+	1	NA	NA	NA	-19	NM_018798	54609	Mm.430772	NM_018798	ENSMUSG00000050148	Ubqln2	Chap1|Dsk2|HRIHFB2157|Plic-2|Plic2	ubiquilin 2	protein-coding	0.145000	0.796020	
mm_67488.1	chr7	80720892	80721092	-	1	NA	NA	NA	-32115	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.010000	0.482587	
mm_20848.1	chr2	148046241	148046441	-	1	NA	NA	NA	-393	NM_001291065	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.090000	0.681592	
mm_14515.1	chr2	132490624	132490824	+	1	NA	NA	NA	-4	NR_028286	70371	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	0.005000	0.507463	-99(GCCTTTAGAGGC,+,0.00)
mm_109037.1	chr12	104101075	104101275	+	1	NA	NA	NA	62	NM_172953	268591	Mm.73172	NM_172953	ENSMUSG00000041550	Serpina5	4933415L04|PAI-3|Pci	serine (or cysteine) peptidase inhibitor, clade A, member 5	protein-coding	0.025000	0.527363	
mm_2111.1	chr1	87853230	87853430	+	1	NA	NA	NA	43	NM_177646	227333	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0.140000	0.786070	
mm_78608.1	chr9	37544944	37545144	+	1	NA	NA	NA	5789	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.070000	0.567164	
mm_23285.1	chr3	51765578	51765778	+	1	NA	NA	NA	104499	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.020000	0.422886	
mm_47516.1	chr5	124083013	124083213	-	1	NA	NA	NA	12685	NM_019875	56325	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.050000	0.547264	
mm_169739.1	chr1	58445445	58445645	-	1	NA	NA	NA	-59	NM_001285827	70225	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding	0.050000	0.557214	
mm_143577.1	chr17	74316196	74316396	-	1	NA	NA	NA	-85	NM_001146224	66310	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0.115000	0.716418	
mm_32672.1	chr4	115737732	115737932	+	1	NA	NA	NA	-241	NM_172698	230648	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	0.100000	0.681592	
mm_147500.1	chr18	49772480	49772680	-	1	NA	NA	NA	-16979	NM_001170960	68857	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0.000000	0.328358	-33(TTTTTAATAGCC,+,0.00)
mm_94764.1	chr11	21238426	21238626	+	1	NA	NA	NA	-506	NM_139061	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.030000	0.562189	
mm_87390.1	chr10	45107453	45107653	+	1	NA	NA	NA	40339	NM_011156	19072	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.010000	0.512438	
mm_14216.1	chr2	127337626	127337826	+	1	NA	NA	NA	-913	NM_172539	215095	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	0.030000	0.597015	
mm_29728.1	chr3	126611777	126611977	-	1	NA	NA	NA	14926	NM_023813	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.015000	0.482587	
mm_154311.1	chr19	61228325	61228525	-	1	NA	NA	NA	-7	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.055000	0.671642	
mm_134442.1	chr16	18248603	18248803	-	1	NA	NA	NA	-9	NM_011239	19385	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	0.120000	0.691542	
mm_5410.1	chr1	33814338	33814538	-	1	NA	NA	NA	157	NM_133817	98403	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	0.150000	0.766169	
mm_50262.1	chr6	43462456	43462656	+	1	NA	NA	NA	20127	NR_045988	319812	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.010000	0.343284	
mm_93589.1	chr10	117063647	117063847	-	1	NA	NA	NA	67	NM_007636	12461	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.110000	0.676617	
mm_64955.1	chr7	16494629	16494829	-	1	NA	NA	NA	-17949	NM_008718	18142	Mm.145821	NM_008718	ENSMUSG00000001988	Npas1	MOP5|bHLHe11	neuronal PAS domain protein 1	protein-coding	0.005000	0.407960	
mm_53082.1	chr6	124965527	124965727	+	1	NA	NA	NA	-98	NM_001164089	26894	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e	COP9 signalosome subunit 7A	protein-coding	0.130000	0.711443	
mm_39920.1	chr5	31526970	31527170	+	1	NA	NA	NA	75	NM_001347328	20534	Mm.352407	NM_009206	ENSMUSG00000029141	Slc4a1ap	kanadaptin	solute carrier family 4 (anion exchanger), member 1, adaptor protein	protein-coding	0.055000	0.567164	
mm_4008.1	chr1	164960787	164960987	+	1	NA	NA	NA	-25377	NM_008510	16963	Mm.190	NM_008510	ENSMUSG00000026573	Xcl1	AI661682|ATAC|LTN|Lptn|SCM-1|SCM-1a|Scyc1	chemokine (C motif) ligand 1	protein-coding	0.010000	0.442786	
mm_116831.1	chr13	54683603	54683803	-	1	NA	NA	NA	4105	NM_001146025	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.010000	0.606965	
mm_52608.1	chr6	117173596	117173796	+	1	NA	NA	NA	5161	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.035000	0.577114	
mm_77884.1	chr9	7282109	7282309	+	1	NA	NA	NA	9695	NM_008607	17386	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0.010000	0.402985	-88(ATCTTTAAAAGT,-,0.00)
mm_153974.1	chr19	47863377	47863577	-	1	NA	NA	NA	-2068	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.005000	0.398010	
mm_10232.1	chr2	6471898	6472098	+	1	NA	NA	NA	119262	NM_181399	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.010000	0.452736	-34(CCTTTTAAAAAG,+,0.00),-34(CCTTTTAAAAAG,-,0.00)
mm_29211.1	chr3	106790035	106790235	-	1	NA	NA	NA	14	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.010000	0.447761	
mm_23648.1	chr3	67473558	67473758	+	1	NA	NA	NA	-9751	NM_016753	17035	Mm.2632	NM_016753	ENSMUSG00000047557	Lxn	-	latexin	protein-coding	0.020000	0.497512	
mm_110271.1	chr12	31996849	31997049	-	1	NA	NA	NA	-46414	NM_153198	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.015000	0.472637	
mm_90752.1	chr10	5514022	5514222	-	1	NA	NA	NA	-25808	NM_001347711	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.005000	0.333333	
mm_75150.1	chr8	36172889	36173089	-	1	NA	NA	NA	76527	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.000000	0.442786	
mm_23366.1	chr3	55281158	55281358	+	1	NA	NA	NA	38732	NM_001195538	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.010000	0.522388	
mm_66018.1	chr7	30603423	30603623	-	1	NA	NA	NA	9211	NM_026815	109637	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	0.010000	0.562189	
mm_78157.1	chr9	21027729	21027929	+	1	NA	NA	NA	-1544	NM_023892	78369	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.010000	0.477612	
mm_89580.1	chr10	95730225	95730425	+	1	NA	NA	NA	-166158	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.020000	0.492537	
mm_163305.1	chr12	3309430	3309630	-	1	NA	NA	NA	439	NM_016676	19325	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.125000	0.701493	
mm_104840.1	chr11	99209424	99209624	-	1	NA	NA	NA	21493	NM_020618	57376	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	0.010000	0.517413	38(GCTTATCTAGAG,+,0.00)
mm_77928.1	chr9	7353385	7353585	+	1	NA	NA	NA	6111	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.398010	
mm_57894.1	chr6	131370273	131370473	-	1	NA	NA	NA	18077	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.030000	0.547264	
mm_124348.1	chr14	104459235	104459435	-	1	NA	NA	NA	8664	NM_011143	18996	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.020000	0.378109	
mm_30423.1	chr3	152667968	152668168	-	1	NA	NA	NA	72	NM_001081277	229949	Mm.207057	NM_001081277	ENSMUSG00000039058	Ak5	-	adenylate kinase 5	protein-coding	0.170000	0.810945	
mm_21283.1	chr2	156953296	156953496	-	1	NA	NA	NA	38715	NM_013865	29812	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0.015000	0.517413	
mm_149135.1	chr19	9002676	9002876	+	1	NA	NA	NA	13492	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.005000	0.507463	
mm_87092.1	chr10	33083047	33083247	+	1	NA	NA	NA	-336	NM_029726	76757	Mm.338508	NM_029726	ENSMUSG00000019787	Trdn	2310045H21Rik|EG432451|TDN	triadin	protein-coding	0.000000	0.398010	
mm_85371.1	chr9	103222015	103222215	-	1	NA	NA	NA	8171	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.010000	0.482587	
mm_47611.1	chr5	125127967	125128167	-	1	NA	NA	NA	51147	NM_001253905	20602	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.005000	0.572139	
mm_164236.1	chr15	91641763	91641963	+	1	NA	NA	NA	-31361	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.005000	0.442786	
mm_46284.1	chr5	100159464	100159664	-	1	NA	NA	NA	244	NM_182841	231503	Mm.99790	NM_182841	ENSMUSG00000050640	Tmem150c	-	transmembrane protein 150C	protein-coding	0.070000	0.601990	
mm_131047.1	chr16	3926149	3926349	+	1	NA	NA	NA	17240	NM_029738	76779	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	0.025000	0.552239	
mm_4712.1	chr1	180942365	180942565	+	1	NA	NA	NA	-53	NM_144794	208795	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.120000	0.646766	
mm_10549.1	chr2	16660729	16660929	+	1	NA	NA	NA	304525	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.010000	0.432836	
mm_149297.1	chr19	10698448	10698648	+	1	NA	NA	NA	9733	NM_181403	107305	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.020000	0.492537	-97(GCTTTTAGAGAC,+,0.00)
mm_54752.1	chr6	41034178	41034378	-	1	NA	NA	NA	1231	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.452736	
mm_73022.1	chr8	94037155	94037355	+	1	NA	NA	NA	57	NM_001093757	270086	Mm.251085	NM_177767	ENSMUSG00000033009	Ogfod1	4930415J21Rik|AA387199|AA939912|AW061076|mKIAA1612	2-oxoglutarate and iron-dependent oxygenase domain containing 1	protein-coding	0.055000	0.552239	
mm_13849.1	chr2	119599862	119600062	+	1	NA	NA	NA	5666	NR_015473	66602	Mm.379181	NR_015473	ENSMUSG00000085438	1700020I14Rik	1190006L01Rik|4933437I03Rik|AI451541|AI585852|AW538376|AW558897|Cyrano	RIKEN cDNA 1700020I14 gene	ncRNA	0.010000	0.323383	
mm_64047.1	chr7	140835178	140835378	+	1	NA	NA	NA	140	NM_001347605	76974	Mm.272359	NM_029821	ENSMUSG00000025481	Urah	1190003J15Rik|2810420C16Rik	urate (5-hydroxyiso-) hydrolase	protein-coding	0.035000	0.587065	
mm_99159.1	chr11	100622776	100622976	+	1	NA	NA	NA	-79	NM_028024	71966	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0.085000	0.671642	
mm_42175.1	chr5	112261696	112261896	+	1	NA	NA	NA	5976	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.015000	0.457711	
mm_33065.1	chr4	123282606	123282806	+	1	NA	NA	NA	-205	NM_130881	230721	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	0.105000	0.726368	47(GGGTATAAATGG,-,0.00)
mm_30858.1	chr4	28914044	28914244	+	1	NA	NA	NA	100999	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.010000	0.248756	
mm_448.1	chr1	35959933	35960133	+	1	NA	NA	NA	-108367	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.005000	0.532338	
mm_150296.1	chr19	34550550	34550750	+	1	NA	NA	NA	-44	NM_008332	15958	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0.040000	0.601990	
mm_61675.1	chr7	80860841	80861041	+	1	NA	NA	NA	-1167	NM_009553	22691	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0.045000	0.597015	
mm_31350.1	chr4	46668784	46668984	+	1	NA	NA	NA	-18685	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	0.020000	0.527363	-33(CCCTATATAAGC,+,0.00),-33(CCCTATATAAGC,-,0.00)
mm_19516.1	chr2	94010623	94010823	-	1	NA	NA	NA	7	NM_026944	69113	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	protein-coding	0.075000	0.656716	
mm_10441.1	chr2	14258542	14258742	+	1	NA	NA	NA	-2361	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.000000	0.442786	-34(GTATTTAAAAAG,-,0.00)
mm_127346.1	chr15	100616191	100616391	+	1	NA	NA	NA	629	NM_011873	23994	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0.055000	0.587065	
mm_158250.1	chrX	107816291	107816491	-	1	NA	NA	NA	-57	NM_025921	67028	Mm.37274	NM_025921	ENSMUSG00000031242	2610002M06Rik	8430408J07Rik|AI876413|Chmp1b2	RIKEN cDNA 2610002M06 gene	protein-coding	0.070000	0.597015	
mm_170589.1	chr19	5800544	5800744	-	1	NA	NA	NA	2028	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.457711	
mm_107089.1	chr12	17542852	17543052	+	1	NA	NA	NA	-1921	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.010000	0.462687	
mm_150670.1	chr19	42051663	42051863	+	1	NA	NA	NA	-465	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	0.010000	0.497512	
mm_64443.1	chr7	142653737	142653937	+	1	NA	NA	NA	1159	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.035000	0.512438	
mm_171679.1	chr4	54155515	54155715	-	1	NA	NA	NA	329570	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.070000	0.631841	
mm_12264.1	chr2	68960249	68960449	+	1	NA	NA	NA	98908	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.015000	0.507463	
mm_46295.1	chr5	100416467	100416667	-	1	NA	NA	NA	-333	NM_026969	69162	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	0.080000	0.552239	
mm_86667.1	chr10	17947404	17947604	+	1	NA	NA	NA	563	NM_001033432	380629	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.175000	0.786070	
mm_15432.1	chr2	157201684	157201884	+	1	NA	NA	NA	2750	NM_011249	19650	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	retinoblastoma-like 1 (p107)	protein-coding	0.000000	0.487562	
mm_45063.1	chr5	43232712	43232912	-	1	NA	NA	NA	-651	NM_175937	231207	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.070000	0.691542	
mm_132524.1	chr16	37776999	37777199	+	1	NA	NA	NA	44	NM_008047	14314	Mm.182434	NM_008047	ENSMUSG00000022816	Fstl1	AI316791|AW107808|Fstl|TSC-36	follistatin-like 1	protein-coding	0.105000	0.726368	-76(GGGTCTTAAGGG,-,0.00)
mm_80248.1	chr9	72748923	72749123	+	1	NA	NA	NA	-58251	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.020000	0.532338	
mm_170330.1	chr18	4403467	4403667	+	1	NA	NA	NA	27975	NM_026157	67440	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0.015000	0.492537	
mm_25552.1	chr3	116007650	116007850	+	1	NA	NA	NA	301	NM_001163515	58193	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	0.085000	0.636816	
mm_77182.1	chr8	111731981	111732181	-	1	NA	NA	NA	55	NM_001198839	12927	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0.140000	0.766169	
mm_11913.1	chr2	52071420	52071620	+	1	NA	NA	NA	-1317	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.025000	0.492537	
mm_123935.1	chr14	73368244	73368444	-	1	NA	NA	NA	16927	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.040000	0.472637	
mm_1158.1	chr1	60900761	60900961	+	1	NA	NA	NA	-8164	NM_009843	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.035000	0.502488	-75(TCTTATAAAGGA,+,0.00)
mm_167926.1	chrX	102935491	102935691	-	1	NA	NA	NA	-1368	NR_026596	331480	Mm.145294	NR_026596		Gm5126	EG331480	predicted pseudogene 5126	ncRNA	0.005000	0.363184	
mm_36383.1	chr4	77137731	77137931	-	1	NA	NA	NA	1074064	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.343284	
mm_17769.1	chr2	32789433	32789633	-	1	NA	NA	NA	-5128	NM_025619	227736	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	0.045000	0.567164	
mm_152247.1	chr19	8714264	8714464	-	1	NA	NA	NA	-467	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.020000	0.432836	
mm_13290.1	chr2	101886159	101886359	+	1	NA	NA	NA	-3	NM_029635	76501	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0.085000	0.616915	
mm_75412.1	chr8	46472329	46472529	-	1	NA	NA	NA	1392	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.000000	0.338308	
mm_90501.1	chr10	128035509	128035709	+	1	NA	NA	NA	263	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.100000	0.651741	
mm_98165.1	chr11	87748862	87749062	+	1	NA	NA	NA	-7902	NR_029555	387160		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.025000	0.537313	
mm_4212.1	chr1	171271528	171271728	+	1	NA	NA	NA	1300	NM_020579	57370	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	0.010000	0.393035	
mm_75800.1	chr8	70138980	70139180	-	1	NA	NA	NA	117	NM_011266	19727	Mm.161167	NM_011266	ENSMUSG00000036120	Rfxank	Tvl1	regulatory factor X-associated ankyrin-containing protein	protein-coding	0.040000	0.467662	
mm_12411.1	chr2	70509396	70509596	+	1	NA	NA	NA	677	NM_025744	66748	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	0.075000	0.661692	
mm_75637.1	chr8	64849632	64849832	-	1	NA	NA	NA	192	NM_178633	77113	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0.150000	0.781095	
mm_144933.1	chr18	37725638	37725838	+	1	NA	NA	NA	32	NM_033591	93716	Mm.247203	NM_033591	ENSMUSG00000103897	Pcdhga8	mKIAA4054	protocadherin gamma subfamily A, 8	protein-coding	0.060000	0.502488	
mm_16638.1	chr2	5934434	5934634	-	1	NA	NA	NA	8258	NM_001081131	209692	Mm.222517	NM_001081131	ENSMUSG00000025815	Dhtkd1	C330018I04Rik	dehydrogenase E1 and transketolase domain containing 1	protein-coding	0.040000	0.457711	39(GCTTTTAAATGA,+,0.00)
mm_144202.1	chr18	9485538	9485738	+	1	NA	NA	NA	-35488	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.000000	0.432836	-46(GGGCATAAAAGA,-,0.00)
mm_27316.1	chr3	50366754	50366954	-	1	NA	NA	NA	76759	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.313433	
mm_152802.1	chr19	21674776	21674976	-	1	NA	NA	NA	21567	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.015000	0.437811	
mm_122139.1	chr14	31168463	31168663	-	1	NA	NA	NA	78	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.025000	0.597015	-66(AGCTTTTAAAGC,-,0.00),-65(GCTTTTAAAGCG,+,0.00),-64(CTTTTAAAGCGG,+,0.00)
mm_117357.1	chr13	69933163	69933363	-	1	NA	NA	NA	-26570	NR_138559	67550	Mm.158159	NR_138559		4933416O17Rik	-	RIKEN cDNA 4933416O17 gene	ncRNA	0.030000	0.422886	
mm_171410.1	chr4	129445215	129445415	-	1	NA	NA	NA	-4497	NM_153541	215627	Mm.428660	NM_153541	ENSMUSG00000048485	Zbtb8b	AV220464|BC023839|BOZF1|Zbtb8	zinc finger and BTB domain containing 8b	protein-coding	0.025000	0.597015	
mm_124032.1	chr14	77029479	77029679	-	1	NA	NA	NA	7038	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding	0.020000	0.482587	
mm_3530.1	chr1	150175745	150175945	+	1	NA	NA	NA	-10897	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.000000	0.422886	
mm_118084.1	chr13	103467152	103467352	-	1	NA	NA	NA	-132760	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.005000	0.502488	
mm_20977.1	chr2	151973717	151973917	-	1	NA	NA	NA	164	NM_001289150	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.050000	0.616915	
mm_120635.1	chr14	70467516	70467716	+	1	NA	NA	NA	10099	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.010000	0.587065	
mm_60367.1	chr7	44442312	44442512	+	1	NA	NA	NA	-75	NM_198250	272381	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	0.025000	0.686567	
mm_64888.1	chr7	15922208	15922408	-	1	NA	NA	NA	63	NM_009156	20364	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0.090000	0.626866	
mm_129146.1	chr15	76206139	76206339	-	1	NA	NA	NA	82	NM_201389	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.030000	0.641791	
mm_34647.1	chr4	150807697	150807897	+	1	NA	NA	NA	47152	NR_040649	73348	Mm.396218	NR_040649	ENSMUSG00000078492	1700045H11Rik	-	RIKEN cDNA 1700045H11 gene	ncRNA	0.025000	0.542289	
mm_24121.1	chr3	88200162	88200362	+	1	NA	NA	NA	-14909	NR_037276	100526540		NR_037276	ENSMUSG00000092988	Mir3093	mir-3093|mmu-mir-3093	microRNA 3093	ncRNA	0.035000	0.542289	
mm_48200.1	chr5	137532683	137532883	-	1	NA	NA	NA	446	NM_010312	14693	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	0.020000	0.577114	-59(CCCTTAATAGTT,+,0.00)
mm_26396.1	chr3	142594745	142594945	+	1	NA	NA	NA	-2	NM_010259	14468	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.005000	0.467662	
mm_127063.1	chr15	97361175	97361375	+	1	NA	NA	NA	-113988	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.045000	0.557214	
mm_96093.1	chr11	60417092	60417292	+	1	NA	NA	NA	47	NM_025757	66771	Mm.29950	NM_025757	ENSMUSG00000018415	Gid4	4933439F18Rik	GID complex subunit 4, VID24 homolog	protein-coding	0.105000	0.631841	
mm_12609.1	chr2	74683739	74683939	+	1	NA	NA	NA	1516	NM_008273	15431	Mm.207763	NM_008273	ENSMUSG00000042499	Hoxd11	E230017H14Rik|Hox-4.6|Hox-5.4|Hox-5.5	homeobox D11	protein-coding	0.040000	0.616915	
mm_39837.1	chr5	30869544	30869744	+	1	NA	NA	NA	-3	NM_144525	68796	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	0.120000	0.716418	
mm_142346.1	chr17	43611996	43612196	-	1	NA	NA	NA	18203	NM_001161366	210510	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	0.070000	0.422886	80(TACTTTTAAAAG,-,0.00),81(ACTTTTAAAAGG,-,0.00),82(CTTTTAAAAGGC,+,0.00)
mm_66394.1	chr7	44241154	44241354	-	1	NA	NA	NA	-5132	NR_029436	70004	Mm.158317	NR_029436	ENSMUSG00000038782	1700028J19Rik	-	RIKEN cDNA 1700028J19 gene	ncRNA	0.005000	0.507463	
mm_120049.1	chr14	56647499	56647699	+	1	NA	NA	NA	-20649	NM_023773	75339	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	0.005000	0.582090	
mm_3847.1	chr1	160195152	160195352	+	1	NA	NA	NA	37	NM_025474	64659	Mm.29599	NM_025474	ENSMUSG00000058267	Mrps14	1810032L21Rik|AL022847|Rpms14	mitochondrial ribosomal protein S14	protein-coding	0.060000	0.641791	-100(CTCTCTATAGGC,-,0.00)
mm_80157.1	chr9	70956016	70956216	+	1	NA	NA	NA	-3895	NM_001324472	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.005000	0.487562	
mm_160554.1	chr9	49081160	49081360	+	1	NA	NA	NA	-21519	NM_030709	80893	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	0.010000	0.512438	
mm_75396.1	chr8	46152345	46152545	-	1	NA	NA	NA	-17111	NM_025747	66756	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430|mKIAA1430	cilia and flagella associated protein 97	protein-coding	0.160000	0.830846	
mm_9669.1	chr1	178315377	178315577	-	1	NA	NA	NA	-3676	NM_025511	66359	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0.020000	0.462687	
mm_102208.1	chr11	54845441	54845641	-	1	NA	NA	NA	15050	NM_029327	75530	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	0.010000	0.442786	
mm_145008.1	chr18	38457670	38457870	+	1	NA	NA	NA	38795	NM_022996	65113	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.000000	0.278607	
mm_59645.1	chr7	28162624	28162824	+	1	NA	NA	NA	-7024	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.030000	0.567164	
mm_34955.1	chr4	155993065	155993265	+	1	NA	NA	NA	12	NM_001302469	20318	Mm.293517	NM_011341	ENSMUSG00000029076	Sdf4	Cab45	stromal cell derived factor 4	protein-coding	0.080000	0.567164	
mm_74409.1	chr8	3623434	3623634	-	1	NA	NA	NA	1515	NM_001129804	18545	Mm.440882	NM_008790	ENSMUSG00000004630	Pcp2	L7|Pcp-2	Purkinje cell protein 2 (L7)	protein-coding	0.015000	0.577114	
mm_65148.1	chr7	19592698	19592898	-	1	NA	NA	NA	11563	NR_125835	53609	Mm.20913	NM_016680	ENSMUSG00000061028	Clasrp	Clasp|Sfrs16|Srsf16|Swap2	CLK4-associating serine/arginine rich protein	protein-coding	0.010000	0.547264	
mm_120820.1	chr14	75136236	75136436	+	1	NA	NA	NA	-89	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.010000	0.422886	
mm_122557.1	chr14	49066566	49066766	-	1	NA	NA	NA	1	NM_207214	105504	Mm.31607	NM_207214	ENSMUSG00000061244	Exoc5	AI447711|AI448003|Gm76|PRO1912|SEC10|Sec10l1	exocyst complex component 5	protein-coding	0.050000	0.547264	
mm_130687.1	chr15	100681846	100682046	-	1	NA	NA	NA	5974	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.020000	0.507463	
mm_145910.1	chr18	65873387	65873587	+	1	NA	NA	NA	1	NM_175012	225642	Mm.20298	NM_175012	ENSMUSG00000024517	Grp	BLP	gastrin releasing peptide	protein-coding	0.080000	0.621891	
mm_12305.1	chr2	69111072	69111272	+	1	NA	NA	NA	-24628	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.005000	0.412935	
mm_143531.1	chr17	73910108	73910308	-	1	NA	NA	NA	39988	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.020000	0.522388	
mm_171555.1	chr4	147131972	147132172	+	1	NA	NA	NA	-43794	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.040000	0.517413	
mm_153618.1	chr19	43986307	43986507	-	1	NA	NA	NA	113	NM_030703	93721	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	0.025000	0.567164	
mm_161597.1	chr16	36221369	36221569	+	1	NA	NA	NA	-93	NM_029733	76770	Mm.327617	NM_029733	ENSMUSG00000095620	2010005H15Rik	-	RIKEN cDNA 2010005H15 gene	protein-coding	0.020000	0.507463	
mm_168390.1	chr1	126830588	126830788	-	1	NA	NA	NA	-56	NM_176957	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.040000	0.552239	72(CACCTTAAAAGA,-,0.00)
mm_49442.1	chr6	29319149	29319349	+	1	NA	NA	NA	109	NM_001289664	330277	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	0.010000	0.512438	
mm_6488.1	chr1	74124343	74124543	-	1	NA	NA	NA	4	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.145000	0.825871	
mm_66753.1	chr7	46712545	46712745	-	1	NA	NA	NA	-1994	NM_030233	78935	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.025000	0.542289	
mm_15309.1	chr2	155517957	155518157	+	1	NA	NA	NA	14	NM_019811	60525	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	0.100000	0.681592	
mm_45707.1	chr5	84066900	84067100	-	1	NA	NA	NA	350382	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.000000	0.263682	
mm_25964.1	chr3	132724327	132724527	+	1	NA	NA	NA	40283	NM_001163455	271981	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0.015000	0.452736	
mm_63363.1	chr7	127050425	127050625	+	1	NA	NA	NA	1452	NM_026918	69036	Mm.21835	NM_026918	ENSMUSG00000049350	Zg16	1810010M01Rik|AI593689|ZG16p	zymogen granule protein 16	protein-coding	0.030000	0.547264	
mm_10623.1	chr2	19452381	19452581	+	1	NA	NA	NA	-5807	NR_131924	102637107	Mm.406835	NR_131924	ENSMUSG00000085388	Ptf1aos	Gm13336|OTTMUSG00000011493	pancreas specific transcription factor 1a, opposite strand	ncRNA	0.040000	0.592040	
mm_138492.1	chr17	35200324	35200524	+	1	NA	NA	NA	1583	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.050000	0.567164	
mm_170651.1	chr2	10080374	10080574	-	1	NA	NA	NA	36	NM_020615	11949	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	0.125000	0.686567	
mm_124706.1	chr15	6547381	6547581	+	1	NA	NA	NA	-32366	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.020000	0.487562	
mm_91440.1	chr10	33932978	33933178	-	1	NA	NA	NA	18134	NM_028287	72580	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	0.005000	0.402985	-9(GGGTATAAATGG,-,0.00)
mm_152555.1	chr19	11484523	11484723	-	1	NA	NA	NA	-7415	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.005000	0.477612	
mm_36101.1	chr4	58553193	58553393	-	1	NA	NA	NA	0	NM_172989	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.155000	0.771144	
mm_21147.1	chr2	154372619	154372819	-	1	NA	NA	NA	0	NM_025876	66971	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	0.100000	0.616915	
mm_86869.1	chr10	21994065	21994265	+	1	NA	NA	NA	275	NM_001161850	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.115000	0.686567	
mm_16563.1	chr2	3332508	3332708	-	1	NA	NA	NA	20	NM_001013376	227522	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0.105000	0.651741	
mm_72975.1	chr8	92892553	92892753	+	1	NA	NA	NA	-8742	NM_027112	69543	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	0.005000	0.388060	
mm_143280.1	chr17	65772543	65772743	-	1	NA	NA	NA	109	NM_133685	106572	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.120000	0.731343	
mm_98448.1	chr11	94944268	94944468	+	1	NA	NA	NA	8144	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.025000	0.547264	
mm_19068.1	chr2	77703215	77703415	-	1	NA	NA	NA	-43	NM_001113399	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.065000	0.517413	
mm_13884.1	chr2	119972655	119972855	+	1	NA	NA	NA	56	NM_011941	26390	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	0.035000	0.557214	
mm_39327.1	chr5	8659859	8660059	+	1	NA	NA	NA	-133	NM_011076	18671	Mm.207354	NM_011076	ENSMUSG00000040584	Abcb1a	Abcb4|Evi32|Mdr1a|Mdr3|P-gp|Pgp|Pgy-3|Pgy3|mdr-3	ATP-binding cassette, sub-family B (MDR/TAP), member 1A	protein-coding	0.030000	0.487562	
mm_11355.1	chr2	30913324	30913524	+	1	NA	NA	NA	-10127	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.020000	0.552239	
mm_31609.1	chr4	58943507	58943707	+	1	NA	NA	NA	-21	NM_001099323	100041581	Mm.463942	NM_001099323	ENSMUSG00000038630	Zkscan16	XM_143800|Zfp483	zinc finger with KRAB and SCAN domains 16	protein-coding	0.095000	0.626866	
mm_150789.1	chr19	44302904	44303104	+	1	NA	NA	NA	-167	NR_039574	100628619		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.035000	0.562189	
mm_57634.1	chr6	128355711	128355911	-	1	NA	NA	NA	40	NM_011657	22158	Mm.291783	NM_011657	ENSMUSG00000001521	Tulp3	2310022L06Rik|AI316887	tubby-like protein 3	protein-coding	0.125000	0.761194	
mm_62276.1	chr7	99587999	99588199	+	1	NA	NA	NA	35830	NR_029760	723840		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	0.050000	0.587065	
mm_1270.1	chr1	63273168	63273368	+	1	NA	NA	NA	-1	NM_028673	73884	Mm.86986	NM_028673	ENSMUSG00000027520	Zdbf2	4930431J08Rik|9330107J05Rik	zinc finger, DBF-type containing 2	protein-coding	0.150000	0.756219	
mm_74459.1	chr8	4214624	4214824	-	1	NA	NA	NA	2588	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.040000	0.597015	
mm_58933.1	chr7	18009788	18009988	+	1	NA	NA	NA	-1	NM_027210	69785	Mm.46086	NM_027210	ENSMUSG00000057195	Ceacam13	1600012K03Rik|1600025J19Rik	carcinoembryonic antigen-related cell adhesion molecule 13	protein-coding	0.000000	0.492537	
mm_549.1	chr1	38019021	38019221	+	1	NA	NA	NA	21111	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.030000	0.422886	85(GTCCAGAAAAGG,-,0.00)
mm_115723.1	chr13	16026550	16026750	-	1	NA	NA	NA	14799	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.020000	0.537313	
mm_135811.1	chr16	57391576	57391776	-	1	NA	NA	NA	38399	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.070000	0.616915	
mm_124404.1	chr14	115471769	115471969	-	1	NA	NA	NA	-62317	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0.005000	0.422886	-34(CTGTATAAAAGA,-,0.00)
mm_47833.1	chr5	134306510	134306710	-	1	NA	NA	NA	8150	NM_001080746	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.015000	0.497512	
mm_104375.1	chr11	94371646	94371846	-	1	NA	NA	NA	21230	NM_029600	76408	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.015000	0.542289	
mm_138615.1	chr17	35823249	35823449	+	1	NA	NA	NA	-8	NM_008027	14251	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	0.085000	0.716418	
mm_79605.1	chr9	58582307	58582507	+	1	NA	NA	NA	167	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.125000	0.761194	
mm_164638.1	chr17	34722286	34722486	-	1	NA	NA	NA	21511	NM_009780	12268	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	0.005000	0.497512	
mm_158183.1	chrX	104201008	104201208	-	1	NA	NA	NA	9	NM_001077354	245555	Mm.381907	NM_001077354	ENSMUSG00000046449	C77370	A230051P11|C77386|KIDLIA|Kiaa2022|Xpn|mKIAA2022	expressed sequence C77370	protein-coding	0.105000	0.691542	
mm_6536.1	chr1	74912947	74913147	-	1	NA	NA	NA	-12326	NR_029876	723900		NR_029876	ENSMUSG00000065616	Mir375	Mirn375|mir-375|mmu-mir-375	microRNA 375	ncRNA	0.015000	0.393035	
mm_100449.1	chr11	119603496	119603696	+	1	NA	NA	NA	691	NM_028898	74370	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	0.120000	0.671642	
mm_142676.1	chr17	47732333	47732533	-	1	NA	NA	NA	-4604	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.040000	0.557214	
mm_18032.1	chr2	38712103	38712303	-	1	NA	NA	NA	31	NM_001316687	26423	Mm.31387	NM_139051	ENSMUSG00000026751	Nr5a1	Ad4BP|ELP|ELP-3|Ftz-F1|Ftzf1|SF-1|SF1|STF-1	nuclear receptor subfamily 5, group A, member 1	protein-coding	0.155000	0.791045	-31(GCATATAGAGCG,+,0.00)
mm_136629.1	chr17	5580914	5581114	+	1	NA	NA	NA	88414	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.000000	0.407960	
mm_76594.1	chr8	89043404	89043604	-	1	NA	NA	NA	658	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.070000	0.676617	
mm_127272.1	chr15	99723887	99724087	+	1	NA	NA	NA	-1631	NM_183256	66379	Mm.5265	NM_183256	ENSMUSG00000023020	Cox14	2310016M24Rik|AA959804	cytochrome c oxidase assembly protein 14	protein-coding	0.005000	0.587065	
mm_67113.1	chr7	70361331	70361531	-	1	NA	NA	NA	-838	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.085000	0.656716	
mm_91535.1	chr10	39133784	39133984	-	1	NA	NA	NA	11	NM_183254	66337	Mm.45187	NM_183254	ENSMUSG00000051736	Fam229b	1700025K23Rik	family with sequence similarity 229, member B	protein-coding	0.050000	0.542289	
mm_131234.1	chr16	10480021	10480221	+	1	NA	NA	NA	49	NM_001302618	12265	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.010000	0.577114	
mm_142938.1	chr17	56008271	56008471	-	1	NA	NA	NA	-830	NM_026530	68047	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	0.040000	0.557214	
mm_102923.1	chr11	69600487	69600687	-	1	NA	NA	NA	5373	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.005000	0.472637	
mm_146686.1	chr18	12862393	12862593	-	1	NA	NA	NA	220	NM_001252493	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.100000	0.731343	
mm_120885.1	chr14	75331684	75331884	+	1	NA	NA	NA	47411	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0.060000	0.552239	
mm_72466.1	chr8	83348344	83348544	+	1	NA	NA	NA	-28	NM_026233	67555	Mm.84115	NM_026233	ENSMUSG00000035057	Mgat4d	4933434I20Rik|GnT1IP|GnT1IP-L	MGAT4 family, member C	protein-coding	0.065000	0.611940	
mm_165894.1	chr4	45346467	45346667	-	1	NA	NA	NA	4466	NM_153167	242418	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	0.055000	0.487562	
mm_81574.1	chr9	110422172	110422372	+	1	NA	NA	NA	2464	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.015000	0.472637	
mm_3587.1	chr1	151345407	151345607	+	1	NA	NA	NA	1009	NM_001039511	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.045000	0.457711	
mm_29350.1	chr3	108415959	108416159	-	1	NA	NA	NA	-565	NM_001004177	53883	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	0.140000	0.741294	-33(GCTTTAAGACCG,+,0.00)
mm_82416.1	chr9	14902442	14902642	-	1	NA	NA	NA	1409	NM_176807	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.005000	0.582090	
mm_129532.1	chr15	79285409	79285609	-	1	NA	NA	NA	0	NM_177580	207495	Mm.309647	NM_177580	ENSMUSG00000018126	Baiap2l2	BC048937	BAI1-associated protein 2-like 2	protein-coding	0.025000	0.626866	
mm_157776.1	chrX	73781688	73781888	-	1	NA	NA	NA	5109	NM_008323	15929	Mm.14825	NM_008323	ENSMUSG00000002010	Idh3g	-	isocitrate dehydrogenase 3 (NAD+), gamma	protein-coding	0.030000	0.537313	
mm_96554.1	chr11	68901423	68901623	+	1	NA	NA	NA	-43	NM_009080	19941	Mm.3229	NM_009080	ENSMUSG00000060938	Rpl26	SIG-20	ribosomal protein L26	protein-coding	0.090000	0.577114	
mm_165953.1	chr4	86670151	86670351	+	1	NA	NA	NA	-192	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.020000	0.557214	
mm_104753.1	chr11	98463627	98463827	-	1	NA	NA	NA	16893	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.035000	0.517413	
mm_77899.1	chr9	7348596	7348796	+	1	NA	NA	NA	1322	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.422886	
mm_160196.1	chr7	79130896	79131096	-	1	NA	NA	NA	22	NM_178255	67666	Mm.178759	NM_178255	ENSMUSG00000030606	Hapln3	4930554N11Rik|Lpr3	hyaluronan and proteoglycan link protein 3	protein-coding	0.065000	0.606965	-78(CCTTTAAGGGGC,+,0.00)
mm_48793.1	chr5	148867800	148868000	-	1	NA	NA	NA	60747	NM_153572	231912	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	0.010000	0.522388	
mm_52987.1	chr6	123264533	123264733	+	1	NA	NA	NA	2526	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.010000	0.537313	
mm_41583.1	chr5	93205377	93205577	+	1	NA	NA	NA	1018	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.050000	0.552239	
mm_165933.1	chr4	68124946	68125146	+	1	NA	NA	NA	829351	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.000000	0.358209	
mm_117163.1	chr13	62760601	62760801	-	1	NA	NA	NA	-38	NR_030493	751548		NR_030493	ENSMUSG00000096098	Mir713	Mirn713|mir-713|mmu-mir-713	microRNA 713	ncRNA	0.040000	0.532338	
mm_164865.1	chr18	56412045	56412245	+	1	NA	NA	NA	-19987	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.000000	0.323383	
mm_1055.1	chr1	58846779	58846979	+	1	NA	NA	NA	44377	NM_001080126	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.000000	0.323383	-3(CCCTTTAAACCC,+,0.00)
mm_101531.1	chr11	33203456	33203656	-	1	NA	NA	NA	32	NM_019916	27140	Mm.25362	NM_019916	ENSMUSG00000040610	Tlx3	Hox11l2|Rnx|Tlx1l2	T cell leukemia, homeobox 3	protein-coding	0.090000	0.671642	
mm_148769.1	chr19	6085000	6085200	+	1	NA	NA	NA	3	NM_026410	67849	Mm.23526	NM_026410	ENSMUSG00000024791	Cdca5	2610036L13Rik|AL024086|AW536684|C85404	cell division cycle associated 5	protein-coding	0.105000	0.616915	
mm_164148.1	chr15	60742727	60742927	+	1	NA	NA	NA	-80138	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0.015000	0.557214	
mm_89128.1	chr10	84917610	84917810	+	1	NA	NA	NA	97	NM_183172	237422	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0.105000	0.721393	
mm_6765.1	chr1	84105623	84105823	-	1	NA	NA	NA	113238	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.422886	
mm_84886.1	chr9	79759664	79759864	-	1	NA	NA	NA	89	NM_009945	12866	Mm.152627	NM_009945	ENSMUSG00000032330	Cox7a2	COX7AL|Cox7a3|CoxVIIa-L	cytochrome c oxidase subunit VIIa 2	protein-coding	0.125000	0.641791	
mm_68051.1	chr7	101560765	101560965	-	1	NA	NA	NA	0	NR_033804	11871	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0.000000	0.472637	7(GCTTTTAGAAGA,+,0.00)
mm_75705.1	chr8	68892598	68892798	-	1	NA	NA	NA	12143	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.015000	0.502488	
mm_50600.1	chr6	49218219	49218419	+	1	NA	NA	NA	-3365	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.080000	0.582090	
mm_4988.1	chr1	191718313	191718513	+	1	NA	NA	NA	18	NM_001134829	226856	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0.165000	0.825871	
mm_61629.1	chr7	80246302	80246502	+	1	NA	NA	NA	26	NM_177765	269954	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	0.115000	0.681592	
mm_88960.1	chr10	81393596	81393796	+	1	NA	NA	NA	632	NM_001099917	72273	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.050000	0.592040	
mm_116481.1	chr13	43765155	43765355	-	1	NA	NA	NA	-19857	NM_009856	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.010000	0.462687	
mm_54332.1	chr6	30640833	30641033	-	1	NA	NA	NA	1715	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.015000	0.507463	
mm_12385.1	chr2	69869824	69870024	+	1	NA	NA	NA	8362	NM_009278	20823	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	0.005000	0.388060	
mm_69343.1	chr7	130089235	130089435	-	1	NA	NA	NA	127170	NR_046077	100043150	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0.000000	0.368159	55(TGTTATATAAGC,-,0.00)
mm_151889.1	chr19	5798640	5798840	-	1	NA	NA	NA	-2759	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.005000	0.422886	62(GCCTCTTAAAAA,-,0.00)
mm_130890.1	chr15	102350632	102350832	-	1	NA	NA	NA	27	NM_153416	223921	Mm.352946	NM_153416	ENSMUSG00000036678	Aaas	AAA|ADRACALA|D030041N15Rik|GL003	achalasia, adrenocortical insufficiency, alacrimia	protein-coding	0.110000	0.611940	
mm_9060.1	chr1	167374457	167374657	-	1	NA	NA	NA	19240	NM_025569	66447	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	0.045000	0.537313	
mm_38922.1	chr4	150003081	150003281	-	1	NA	NA	NA	55	NM_001291004	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.015000	0.482587	
mm_81676.1	chr9	111038795	111038995	+	1	NA	NA	NA	18349	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.010000	0.502488	
mm_89371.1	chr10	88731342	88731542	+	1	NA	NA	NA	28	NM_025859	104303	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0.115000	0.706468	
mm_160093.1	chr7	17073927	17074127	+	1	NA	NA	NA	-13	NM_001310628	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.015000	0.512438	
mm_41279.1	chr5	90365301	90365501	+	1	NA	NA	NA	784	NM_030886	81702	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0.060000	0.661692	
mm_63330.1	chr7	126950401	126950601	+	1	NA	NA	NA	-34	NM_144926	233878	Mm.283926	NM_144926	ENSMUSG00000030683	Sez6l2	AI835913|AW121566|BSRP-A|Psk1	seizure related 6 homolog like 2	protein-coding	0.040000	0.611940	
mm_51527.1	chr6	83186071	83186271	+	1	NA	NA	NA	225	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.060000	0.656716	
mm_44577.1	chr5	24842376	24842576	-	1	NA	NA	NA	-115	NM_053075	19744	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.150000	0.701493	-74(CCCTTTAAAGTA,+,0.00)
mm_3281.1	chr1	136624873	136625073	+	1	NA	NA	NA	72	NM_001160251	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.140000	0.681592	
mm_53880.1	chr6	3332798	3332998	-	1	NA	NA	NA	44379	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.000000	0.278607	
mm_165031.1	chr19	34165899	34166099	-	1	NA	NA	NA	42	NM_024204	52024	Mm.183030	NM_024204	ENSMUSG00000024774	Ankrd22	5430429D21Rik|D19Ertd675e	ankyrin repeat domain 22	protein-coding	0.010000	0.517413	
mm_119295.1	chr14	34674119	34674319	+	1	NA	NA	NA	291	NM_001301330	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.130000	0.756219	
mm_30031.1	chr3	135691098	135691298	-	1	NA	NA	NA	349	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.180000	0.835821	
mm_136887.1	chr17	13010239	13010439	+	1	NA	NA	NA	2500	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.005000	0.417910	
mm_87523.1	chr10	53280184	53280384	+	1	NA	NA	NA	14	NR_038015	100502820	Mm.55827	NR_038015		Gm19395	-	predicted gene, 19395	ncRNA	0.015000	0.398010	-56(TGTCATAAAAGC,-,0.00)
mm_87835.1	chr10	60374662	60374862	+	1	NA	NA	NA	-24964	NM_001164374	100302688	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.005000	0.457711	
mm_114102.1	chr13	54731623	54731823	+	1	NA	NA	NA	18151	NM_001316710	26913	Mm.41812	NM_012014	ENSMUSG00000069227	Gprin1	GRIN1|Z16	G protein-regulated inducer of neurite outgrowth 1	protein-coding	0.015000	0.467662	
mm_164974.1	chr19	8722879	8723079	+	1	NA	NA	NA	390	NM_001161413	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.080000	0.616915	-58(TTCCCTAAAAGG,-,0.00)
mm_96535.1	chr11	68623775	68623975	+	1	NA	NA	NA	36838	NM_177779	276920	Mm.123046	NM_177779	ENSMUSG00000045915	Ccdc42	A530001H01Rik	coiled-coil domain containing 42	protein-coding	0.025000	0.452736	73(TCTTTTATAACC,+,0.00)
mm_85630.1	chr9	107616380	107616580	-	1	NA	NA	NA	-7239	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.040000	0.567164	
mm_127215.1	chr15	99276185	99276385	+	1	NA	NA	NA	10895	NM_001081254	545136	Mm.324745	NM_001081254	ENSMUSG00000078907	Fam186b	EG545136	family with sequence similarity 186, member B	protein-coding	0.010000	0.512438	
mm_115212.1	chr13	109440969	109441169	+	1	NA	NA	NA	116325	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.045000	0.641791	
mm_70756.1	chr8	21084298	21084498	+	1	NA	NA	NA	-44	NM_007849	13236	Mm.376982	NM_007849	ENSMUSG00000094687	Defa25	Defcr-2|Defcr2|Defcr25	defensin, alpha, 25	protein-coding	0.000000	0.507463	
mm_144127.1	chr18	4920448	4920648	+	1	NA	NA	NA	108062	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA	0.140000	0.761194	
mm_79032.1	chr9	46050014	46050214	+	1	NA	NA	NA	37294	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.010000	0.497512	
mm_118049.1	chr13	101702033	101702233	-	1	NA	NA	NA	-9503	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.005000	0.378109	
mm_117116.1	chr13	60624074	60624274	-	1	NA	NA	NA	21963	NM_134062	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.025000	0.472637	
mm_128562.1	chr15	56172027	56172227	-	1	NA	NA	NA	-265178	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding	0.020000	0.577114	
mm_77619.1	chr8	123930909	123931109	-	1	NA	NA	NA	18256	NM_172288	234865	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	0.010000	0.358209	
mm_27025.1	chr3	26102262	26102462	-	1	NA	NA	NA	50945	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.313433	
mm_49177.1	chr6	14903394	14903594	+	1	NA	NA	NA	2145	NM_053242	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.000000	0.517413	
mm_76865.1	chr8	105494567	105494767	-	1	NA	NA	NA	2203	NM_175160	70796	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik	zinc finger, DHHC domain containing 1	protein-coding	0.005000	0.462687	
mm_129551.1	chr15	79441731	79441931	-	1	NA	NA	NA	-13	NM_001289899	27373	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.160000	0.766169	
mm_41494.1	chr5	92323673	92323873	+	1	NA	NA	NA	4306	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.015000	0.373134	-66(ATGTATTAAAGG,-,0.00)
mm_8018.1	chr1	134955784	134955984	-	1	NA	NA	NA	56	NM_001081307	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.075000	0.651741	
mm_171537.1	chr4	146909442	146909642	-	1	NA	NA	NA	-112308	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.030000	0.537313	
mm_29084.1	chr3	104454488	104454688	-	1	NA	NA	NA	57330	NM_001310698	269473	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0.000000	0.407960	
mm_115130.1	chr13	104287813	104288013	+	1	NA	NA	NA	78	NM_001081020	108154	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.035000	0.452736	39(TCTTTTAAACTC,+,0.00)
mm_150593.1	chr19	40679476	40679676	+	1	NA	NA	NA	19806	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.005000	0.398010	
mm_53805.1	chr6	146861896	146862096	+	1	NA	NA	NA	11886	NM_027059	69371	Mm.252733	NM_027059	ENSMUSG00000030292	Smco2	1700023A16Rik	single-pass membrane protein with coiled-coil domains 2	protein-coding	0.010000	0.597015	
mm_113095.1	chr13	24159818	24160018	+	1	NA	NA	NA	120872	NM_001311122	68732	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0.010000	0.452736	
mm_5031.1	chr1	193301894	193302094	+	1	NA	NA	NA	0	NM_008484	16780	Mm.435441	NM_008484	ENSMUSG00000026639	Lamb3	-	laminin, beta 3	protein-coding	0.010000	0.611940	
mm_63283.1	chr7	126771009	126771209	+	1	NA	NA	NA	4695	NM_024228	68616	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	0.040000	0.567164	
mm_95776.1	chr11	54909564	54909764	+	1	NA	NA	NA	6810	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.030000	0.611940	
mm_49064.1	chr6	5390432	5390632	+	1	NA	NA	NA	7146	NM_023048	65255	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0.025000	0.497512	
mm_95196.1	chr11	43155612	43155812	+	1	NA	NA	NA	5835	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding	0.010000	0.422886	
mm_18606.1	chr2	68251221	68251421	-	1	NA	NA	NA	146649	NM_020283	26877	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	0.025000	0.412935	
mm_43950.1	chr5	145140334	145140534	+	1	NA	NA	NA	-3	NM_001310770	231889	Mm.277413	NM_001008705	ENSMUSG00000038722	Bud31	C77604|EDG-2|EDG2|G10	BUD31 homolog	protein-coding	0.085000	0.587065	
mm_18659.1	chr2	70509113	70509313	-	1	NA	NA	NA	394	NM_025744	66748	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	0.105000	0.691542	
mm_127665.1	chr15	102520756	102520956	+	1	NA	NA	NA	2664	NM_009319	21357	Mm.291485	NM_009319	ENSMUSG00000023051	Tarbp2	Prbp|TRBP	TARBP2, RISC loading complex RNA binding subunit	protein-coding	0.000000	0.542289	
mm_111321.1	chr12	86078927	86079127	-	1	NA	NA	NA	14	NM_009368	21809	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.020000	0.562189	
mm_164313.1	chr15	103897472	103897672	-	1	NA	NA	NA	1728	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.005000	0.383085	
mm_40011.1	chr5	33018856	33019056	+	1	NA	NA	NA	140	NM_011738	22629	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.190000	0.796020	
mm_30363.1	chr3	151837390	151837590	-	1	NA	NA	NA	38	NM_008966	19220	Mm.331442	NM_008966	ENSMUSG00000028036	Ptgfr	AI957154|PGF|fp	prostaglandin F receptor	protein-coding	0.030000	0.616915	
mm_110521.1	chr12	54862947	54863147	-	1	NA	NA	NA	-170	NM_007688	12632	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	0.115000	0.681592	
mm_785.1	chr1	45330461	45330661	+	1	NA	NA	NA	19023	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.010000	0.398010	-14(GTTTTTAGGGTC,+,0.00)
mm_140149.1	chr17	80113006	80113206	+	1	NA	NA	NA	-14365	NM_176963	319625	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.010000	0.517413	
mm_88250.1	chr10	72674188	72674388	+	1	NA	NA	NA	19442	NM_001293683	52696	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	0.025000	0.487562	
mm_83067.1	chr9	37553294	37553494	-	1	NA	NA	NA	-649	NM_022029	64011	Mm.335065	NM_022029	ENSMUSG00000053310	Nrgn	0710001B06Rik|AI838505|NG|NG/RC3|Pss1|R75334|RC3	neurogranin	protein-coding	0.015000	0.393035	
mm_131964.1	chr16	24656948	24657148	+	1	NA	NA	NA	-64807	NM_001145954	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.005000	0.407960	
mm_72220.1	chr8	72688389	72688589	+	1	NA	NA	NA	-34781	NM_001113248	20467	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0.000000	0.502488	
mm_55917.1	chr6	83775697	83775897	-	1	NA	NA	NA	15	NM_009357	21766	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	0.155000	0.766169	
mm_118682.1	chr14	22100847	22101047	+	1	NA	NA	NA	81235	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.010000	0.442786	
mm_153322.1	chr19	38118330	38118530	-	1	NA	NA	NA	6381	NM_011255	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.040000	0.567164	
mm_99129.1	chr11	100319764	100319964	+	1	NA	NA	NA	-85	NM_011508	20918	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.085000	0.656716	89(GGCTATATAAGT,-,0.00)
mm_75506.1	chr8	54393552	54393752	-	1	NA	NA	NA	136346	NM_029701	76687	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.020000	0.417910	-57(GCTTTTAAACAA,+,0.00)
mm_624.1	chr1	40224967	40225167	+	1	NA	NA	NA	-13	NM_008362	16177	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.020000	0.492537	
mm_165916.1	chr4	57956320	57956520	-	1	NA	NA	NA	-9	NM_011660	22166	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.115000	0.726368	
mm_16228.1	chr2	173155865	173156065	+	1	NA	NA	NA	2892	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.025000	0.537313	
mm_34310.1	chr4	141814914	141815114	+	1	NA	NA	NA	10991	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.010000	0.462687	
mm_6168.1	chr1	65071473	65071673	-	1	NA	NA	NA	1959	NM_007775	12966	Mm.491115	NM_007775	ENSMUSG00000025952	Crygc	Cryg-5	crystallin, gamma C	protein-coding	0.025000	0.437811	
mm_158520.1	chrX	143827237	143827437	-	1	NA	NA	NA	75	NM_007603	12338	Mm.30290	NM_007603	ENSMUSG00000067276	Capn6	-	calpain 6	protein-coding	0.005000	0.562189	
mm_57234.1	chr6	123282781	123282981	-	1	NA	NA	NA	6990	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.005000	0.368159	
mm_47294.1	chr5	122241295	122241495	-	1	NA	NA	NA	23065	NR_104441	654470	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.020000	0.542289	
mm_131376.1	chr16	13927653	13927853	+	1	NA	NA	NA	-12876	NM_001289563	93734	Mm.76554	NM_033564	ENSMUSG00000022679	Mpv17l	M-LP	Mpv17 transgene, kidney disease mutant-like	protein-coding	0.005000	0.447761	
mm_126438.1	chr15	80623424	80623624	+	1	NA	NA	NA	41	NM_010815	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.015000	0.587065	
mm_105176.1	chr11	101784749	101784949	-	1	NA	NA	NA	461	NM_008815	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.090000	0.641791	
mm_157250.1	chrX	19148994	19149194	-	1	NA	NA	NA	-2123	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.025000	0.472637	
mm_47100.1	chr5	118232350	118232550	-	1	NA	NA	NA	12411	NM_172998	269695	Mm.320042	NM_172998	ENSMUSG00000032850	Rnft2	AW049082|B830028P19Rik|Tmem118	ring finger protein, transmembrane 2	protein-coding	0.010000	0.547264	
mm_32801.1	chr4	117096702	117096902	+	1	NA	NA	NA	746	NM_008958	19207	Mm.287037	NM_008958	ENSMUSG00000028681	Ptch2	ptc2	patched 2	protein-coding	0.010000	0.522388	
mm_151886.1	chr19	5798568	5798768	-	1	NA	NA	NA	-2687	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.010000	0.417910	-10(GCCTCTTAAAAA,-,0.00)
mm_33723.1	chr4	134065780	134065980	+	1	NA	NA	NA	-2572	NM_001162970	230806	Mm.240080	NM_001162970	ENSMUSG00000012123	Aim1l	-	absent in melanoma 1-like	protein-coding	0.040000	0.636816	
mm_100750.1	chr11	4231557	4231757	-	1	NA	NA	NA	-5128	NM_001013365	18413	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.005000	0.452736	-34(TACTATAAAGGC,-,0.00)
mm_105357.1	chr11	103028255	103028455	-	1	NA	NA	NA	-207	NM_008707	18107	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.065000	0.557214	38(CGCCTTATAGGG,-,0.00),40(CCTTATAGGGTG,+,0.00)
mm_59641.1	chr7	28157892	28158092	+	1	NA	NA	NA	-11756	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.025000	0.557214	
mm_70759.1	chr8	21473106	21473306	+	1	NA	NA	NA	-16689	NM_001177526	665956	Mm.484981	NM_001177526	ENSMUSG00000079113	Gm7861	EG665956	predicted gene 7861	protein-coding	0.005000	0.527363	
mm_55110.1	chr6	50382808	50383008	-	1	NA	NA	NA	-71	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.020000	0.467662	
mm_47894.1	chr5	134723081	134723281	-	1	NA	NA	NA	24142	NM_007925	13717	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	0.000000	0.437811	
mm_155142.1	chrX	52760330	52760530	+	1	NA	NA	NA	-15837	NR_003188	751866	Mm.381916	NR_003188		Kis2	Kis2-T1|Kis2-T2|Kis2-T3|Kis2-T4|Kis2-T5|Platr24|Xpcl1	Kaplan integration site 2	ncRNA	0.010000	0.412935	
mm_71266.1	chr8	40918893	40919093	+	1	NA	NA	NA	-7240	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.010000	0.437811	
mm_76880.1	chr8	105606604	105606804	-	1	NA	NA	NA	1475	NM_001081241	75687	Mm.41261	NM_001081241	ENSMUSG00000038604	Fam65a	2310066E14Rik|AI837433	family with sequence similarity 65, member A	protein-coding	0.045000	0.661692	
mm_136836.1	chr17	12746437	12746637	+	1	NA	NA	NA	5226	NR_027784	104103	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.005000	0.427861	
mm_119251.1	chr14	33923524	33923724	+	1	NA	NA	NA	37	NM_145741	14560	Mm.432071	NM_145741	ENSMUSG00000021943	Gdf10	Bmp3b	growth differentiation factor 10	protein-coding	0.155000	0.771144	
mm_162919.1	chr10	120625607	120625807	-	1	NA	NA	NA	-140025	NR_038000	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.010000	0.507463	
mm_130220.1	chr15	96131727	96131927	-	1	NA	NA	NA	-50973	NR_028311	100043335	Mm.247464	NR_028311		Gm4371	EG667874|Gm8854	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	0.000000	0.567164	
mm_84515.1	chr9	67033888	67034088	-	1	NA	NA	NA	9883	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.035000	0.517413	
mm_132417.1	chr16	35093671	35093871	+	1	NA	NA	NA	-61865	NM_001012765	224129	Mm.41137	NM_001012765	ENSMUSG00000022840	Adcy5	AW121902|Ac5	adenylate cyclase 5	protein-coding	0.000000	0.407960	
mm_164369.1	chr16	24090076	24090276	-	1	NA	NA	NA	-101564	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.005000	0.527363	
mm_93390.1	chr10	107272621	107272821	-	1	NA	NA	NA	327	NM_001284329	108030	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding	0.025000	0.542289	
mm_116732.1	chr13	51734556	51734756	-	1	NA	NA	NA	59091	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.015000	0.547264	
mm_146657.1	chr18	11657651	11657851	-	1	NA	NA	NA	402	NM_001081223	225182	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8	protein-coding	0.160000	0.736318	
mm_155023.1	chrX	42066455	42066655	+	1	NA	NA	NA	-1281	NM_009688	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.010000	0.512438	
mm_125414.1	chr15	41788905	41789105	+	1	NA	NA	NA	-29	NM_001130165	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.160000	0.800995	
mm_98361.1	chr11	93886152	93886352	+	1	NA	NA	NA	33	NM_134012	103537	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	0.080000	0.726368	
mm_74047.1	chr8	122139913	122140113	+	1	NA	NA	NA	-142128	NM_009569	22761	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.020000	0.606965	
mm_98238.1	chr11	88142455	88142655	+	1	NA	NA	NA	-27010	NM_001172099	103841	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	0.030000	0.522388	
mm_62854.1	chr7	114482611	114482811	+	1	NA	NA	NA	67457	NM_011055	18576	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0.010000	0.432836	-34(CACTATAAAAAA,-,0.00)
mm_69812.1	chr7	141263732	141263932	-	1	NA	NA	NA	2592	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.035000	0.601990	
mm_105550.1	chr11	106387689	106387889	-	1	NA	NA	NA	-5008	NM_010494	15896	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.005000	0.492537	
mm_77708.1	chr8	126591675	126591875	-	1	NA	NA	NA	1661	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.015000	0.507463	
mm_85056.1	chr9	90202609	90202809	-	1	NA	NA	NA	39731	NM_001311115	108153	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.040000	0.477612	65(ATTTTTATAGAC,+,0.00)
mm_31263.1	chr4	45203818	45204018	+	1	NA	NA	NA	19012	NM_001081172	666060	Mm.24783	NM_001081172	ENSMUSG00000035615	Frmpd1	BC031840|mKIAA0967	FERM and PDZ domain containing 1	protein-coding	0.010000	0.552239	
mm_39465.1	chr5	19226846	19227046	+	1	NA	NA	NA	-100	NM_001170746	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.125000	0.746269	
mm_124878.1	chr15	10223870	10224070	+	1	NA	NA	NA	64	NM_001253781	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.005000	0.522388	
mm_145921.1	chr18	67072869	67073069	+	1	NA	NA	NA	-15329	NM_177137	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.020000	0.437811	
mm_30163.1	chr3	144188829	144189029	-	1	NA	NA	NA	13403	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.010000	0.398010	
mm_74067.1	chr8	122430461	122430661	+	1	NA	NA	NA	2379	NM_001301284	13057	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.000000	0.572139	
mm_50252.1	chr6	42585122	42585322	+	1	NA	NA	NA	12150	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.388060	
mm_158064.1	chrX	101212774	101212974	-	1	NA	NA	NA	9689	NM_001110311	55988	Mm.206949	NM_018875	ENSMUSG00000046032	Snx12	2610001F05Rik|AW045757|SDP8	sorting nexin 12	protein-coding	0.030000	0.512438	
mm_2864.1	chr1	131712824	131713024	+	1	NA	NA	NA	24229	NM_001311096	226421	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0.010000	0.462687	
mm_63875.1	chr7	136268782	136268982	+	1	NA	NA	NA	558	NR_102277	77383	Mm.227745	NR_102277	ENSMUSG00000110027	C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA	0.000000	0.482587	55(GAGCATTAAAGG,-,0.00),82(CCTCATATGGAG,+,0.00)
mm_51053.1	chr6	65631298	65631498	+	1	NA	NA	NA	-40213	NM_172399	68169	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding	0.005000	0.457711	
mm_118826.1	chr14	25588413	25588613	+	1	NA	NA	NA	1709	NR_033492	77592	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0.015000	0.502488	14(CCTTTTAAAAAC,+,0.00)
mm_140246.1	chr17	84181845	84182045	+	1	NA	NA	NA	6002	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.035000	0.572139	-45(CGGTTTTAAAGA,-,0.00)
mm_93147.1	chr10	92375277	92375477	-	1	NA	NA	NA	-4	NR_046027	627800	Mm.391417	NR_046027	ENSMUSG00000098040	Gm20757	-	predicted gene, 20757	ncRNA	0.010000	0.393035	-34(GCCTTTTTAAAA,-,0.00),-32(CTTTTTAAAAAC,+,0.00)
mm_56088.1	chr6	87335642	87335842	-	1	NA	NA	NA	33	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.035000	0.487562	
mm_53906.1	chr6	3763521	3763721	-	1	NA	NA	NA	2	NM_001042725	12311	Mm.4642	NM_007588	ENSMUSG00000023964	Calcr	Clr	calcitonin receptor	protein-coding	0.080000	0.631841	
mm_90323.1	chr10	127067075	127067275	+	1	NA	NA	NA	3086	NM_025982	67125	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	0.005000	0.452736	
mm_33099.1	chr4	124700614	124700814	+	1	NA	NA	NA	15	NM_010213	14201	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	0.120000	0.786070	
mm_137639.1	chr17	28505646	28505846	+	1	NA	NA	NA	-19597	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.010000	0.582090	
mm_166933.1	chr7	35127824	35128024	-	1	NA	NA	NA	8631	NM_007678	12606	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.015000	0.497512	-37(TTGCATAAAAGG,-,0.00)
mm_32957.1	chr4	119733695	119733895	+	1	NA	NA	NA	-74850	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.145000	0.766169	
mm_17690.1	chr2	32331906	32332106	-	1	NA	NA	NA	13546	NR_029811	387239		NR_029811	ENSMUSG00000092807	Mir199b	Mirn199b|mir-199b	microRNA 199b	ncRNA	0.000000	0.472637	
mm_109801.1	chr12	3309593	3309793	-	1	NA	NA	NA	276	NM_016676	19325	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.155000	0.771144	
mm_21350.1	chr2	157119495	157119695	-	1	NA	NA	NA	15627	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.020000	0.402985	
mm_85433.1	chr9	103761702	103761902	-	1	NA	NA	NA	35	NM_178638	81907	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding	0.155000	0.796020	
mm_170880.1	chr2	20900027	20900227	+	1	NA	NA	NA	67594	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.075000	0.522388	-30(AACTTTAAATGG,-,0.00)
mm_170205.1	chr17	6961038	6961238	-	1	NA	NA	NA	18	NM_147155	380608	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	0.140000	0.711443	
mm_139167.1	chr17	47557734	47557934	+	1	NA	NA	NA	-35633	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.452736	
mm_76406.1	chr8	84846921	84847121	-	1	NA	NA	NA	-90	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.050000	0.597015	
mm_50985.1	chr6	63255782	63255982	+	1	NA	NA	NA	-975	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.025000	0.442786	-89(GTTTTTATAACC,+,0.00)
mm_143880.1	chr17	84272999	84273199	-	1	NA	NA	NA	-85152	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.010000	0.442786	
mm_141860.1	chr17	34803994	34804194	-	1	NA	NA	NA	332	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.010000	0.542289	
mm_140503.1	chr17	5058396	5058596	-	1	NA	NA	NA	63422	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.025000	0.577114	
mm_11879.1	chr2	49523511	49523711	+	1	NA	NA	NA	72125	NM_172663	227867	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2 (Drosophila)	protein-coding	0.010000	0.338308	
mm_124304.1	chr14	103098802	103099002	-	1	NA	NA	NA	102	NM_001347601	50789	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.120000	0.756219	
mm_56903.1	chr6	119196450	119196650	-	1	NA	NA	NA	-141	NM_001255999	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.010000	0.522388	
mm_27958.1	chr3	79886068	79886268	-	1	NA	NA	NA	238	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.045000	0.542289	
mm_79026.1	chr9	45984834	45985034	+	1	NA	NA	NA	-63	NM_008775	18475	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0.075000	0.631841	
mm_10382.1	chr2	12301113	12301313	+	1	NA	NA	NA	-33	NR_040353	338535	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.025000	0.522388	
mm_12082.1	chr2	59811928	59812128	+	1	NA	NA	NA	70578	NM_001159636	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.000000	0.412935	
mm_5431.1	chr1	34560879	34561079	-	1	NA	NA	NA	-36	NM_009356	21756	Mm.14418	NM_009356	ENSMUSG00000037529	Prss40	Tesp2	protease, serine 40	protein-coding	0.045000	0.577114	
mm_151671.1	chr19	4190868	4191068	-	1	NA	NA	NA	79	NM_178650	108995	Mm.288312	NM_178650	ENSMUSG00000040247	Tbc1d10c	1810062O14Rik|AI428527	TBC1 domain family, member 10c	protein-coding	0.010000	0.621891	
mm_127152.1	chr15	98567929	98568129	+	1	NA	NA	NA	-393	NM_009833	12455	Mm.29941	NM_009833	ENSMUSG00000011960	Ccnt1	2810478G24Rik|AI115585|CycT1	cyclin T1	protein-coding	0.095000	0.577114	-92(GTTCTTTAAAGG,-,0.00),-90(TCTTTAAAGGTC,+,0.00)
mm_107054.1	chr12	16653476	16653676	+	1	NA	NA	NA	106	NM_008747	18217	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT2R|NTRL	neurotensin receptor 2	protein-coding	0.075000	0.666667	
mm_1503.1	chr1	72237319	72237519	+	1	NA	NA	NA	-25112	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.010000	0.348259	
mm_41678.1	chr5	99978437	99978637	+	1	NA	NA	NA	401	NM_001077266	11991	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.170000	0.800995	
mm_116584.1	chr13	47106091	47106291	-	1	NA	NA	NA	30	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.155000	0.711443	
mm_135528.1	chr16	49255692	49255892	-	1	NA	NA	NA	198306	NM_001166210	667772	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0.030000	0.482587	
mm_140304.1	chr17	85624116	85624316	+	1	NA	NA	NA	3382	NM_011381	20473	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0.050000	0.522388	
mm_71482.1	chr8	46739672	46739872	+	1	NA	NA	NA	27	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.055000	0.582090	
mm_143642.1	chr17	79354810	79355010	-	1	NA	NA	NA	181	NM_026514	260409	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	0.115000	0.706468	
mm_83705.1	chr9	50698914	50699114	-	1	NA	NA	NA	28970	NM_178118	330938	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	0.105000	0.726368	
mm_77786.1	chr9	3025518	3025718	+	1	NA	NA	NA	13125	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.020000	0.343284	
mm_169032.1	chr13	12702138	12702338	+	1	NA	NA	NA	-51843	NR_003568	664862	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik|ENSMUSG00000075118	G protein-coupled receptor 137B, pseudogene	pseudo	0.075000	0.681592	
mm_99421.1	chr11	102316910	102317110	+	1	NA	NA	NA	277	NM_001044383	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.135000	0.771144	
mm_28079.1	chr3	84480366	84480566	-	1	NA	NA	NA	-27	NM_001033301	229474	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0.120000	0.761194	
mm_36664.1	chr4	95051187	95051387	-	1	NA	NA	NA	935	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.115000	0.621891	
mm_10938.1	chr2	25468909	25469109	+	1	NA	NA	NA	740	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.025000	0.552239	
mm_157047.1	chrX	8015475	8015675	-	1	NA	NA	NA	2917	NM_027227	69824	Mm.279756	NM_027227	ENSMUSG00000031163	Glod5	2010001H14Rik|AV061890	glyoxalase domain containing 5	protein-coding	0.005000	0.487562	
mm_162606.1	chr1	183221420	183221620	-	1	NA	NA	NA	9	NM_001278218	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0.105000	0.721393	
mm_49021.1	chr6	4759398	4759598	+	1	NA	NA	NA	12192	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.020000	0.432836	
mm_161487.1	chr15	84732777	84732977	+	1	NA	NA	NA	-12611	NR_040347	328576	Mm.400211	NR_040347		Gm20556	A430075N02	predicted gene, 20556	ncRNA	0.015000	0.522388	
mm_106679.1	chr11	121956627	121956827	-	1	NA	NA	NA	126509	NM_029049	74675	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.045000	0.552239	
mm_159892.1	chr6	29411615	29411815	+	1	NA	NA	NA	12789	NM_001201378	232664	Mm.251303	NM_145574	ENSMUSG00000029769	Ccdc136	4921511K06Rik|BC006583	coiled-coil domain containing 136	protein-coding	0.025000	0.557214	
mm_104931.1	chr11	100046446	100046646	-	1	NA	NA	NA	4005	NM_010659	16660	Mm.439673	NM_010659	ENSMUSG00000048981	Krt31	Ha1|Kha1|Krt1-1|MKHA-1	keratin 31	protein-coding	0.020000	0.512438	-32(CTCTATAAAAAG,-,0.00)
mm_156610.1	chrX	153359999	153360199	+	1	NA	NA	NA	122054	NM_173780	245671	Mm.260751	NM_173780	ENSMUSG00000041649	Klf8	A830097P10Rik|BKLF3|ZNF74	Kruppel-like factor 8	protein-coding	0.060000	0.582090	
mm_19112.1	chr2	79456656	79456856	-	1	NA	NA	NA	-120	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.080000	0.656716	
mm_79823.1	chr9	64397624	64397824	+	1	NA	NA	NA	12098	NM_001134399	214058	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	0.005000	0.527363	75(CCTTTAAAATCC,+,0.00)
mm_134277.1	chr16	14159085	14159285	-	1	NA	NA	NA	89	NM_001081154	223989	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis arrest female 1	protein-coding	0.080000	0.656716	
mm_38022.1	chr4	133756687	133756887	-	1	NA	NA	NA	-3176	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.065000	0.562189	
mm_17516.1	chr2	29251335	29251535	-	1	NA	NA	NA	1558	NR_029460	76220	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0.055000	0.636816	
mm_20110.1	chr2	121140283	121140483	-	1	NA	NA	NA	-45	NM_001290811	75894	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	0.145000	0.686567	
mm_154516.1	chrM	12617	12817	-	1	NA	NA	NA	NA	NA									0.025000	0.417910	-52(GAGCATATAAAG,-,0.00),-50(GCATATAAAGAG,+,0.00)
mm_115869.1	chr13	21501353	21501553	-	1	NA	NA	NA	5071	NR_026798	100038371	Mm.133328	NR_026798		Zfp389	ENSMUSG00000075041|OTTMUSG00000018077	zinc finger protein 389	pseudo	0.045000	0.572139	
mm_6268.1	chr1	69548689	69548889	-	1	NA	NA	NA	137171	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.005000	0.432836	
mm_156167.1	chrX	130051355	130051555	+	1	NA	NA	NA	301713	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.005000	0.248756	
mm_171120.1	chr3	141766518	141766718	-	1	NA	NA	NA	164970	NM_001277218	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.035000	0.502488	
mm_75073.1	chr8	33844804	33845004	-	1	NA	NA	NA	84959	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.040000	0.522388	
mm_158899.1	chr1	30863150	30863350	-	1	NA	NA	NA	6	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding	0.000000	0.293532	
mm_131201.1	chr16	8619395	8619595	+	1	NA	NA	NA	18206	NM_025708	66690	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	0.015000	0.537313	53(CATTATAAAGGC,+,0.00)
mm_111409.1	chr12	91330121	91330321	-	1	NA	NA	NA	54188	NM_181815	75216	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0.000000	0.368159	
mm_51846.1	chr6	90363209	90363409	+	1	NA	NA	NA	-6185	NM_173002	80292	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	0.020000	0.582090	
mm_52007.1	chr6	93018422	93018622	+	1	NA	NA	NA	77940	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.005000	0.373134	
mm_41664.1	chr5	99336635	99336835	+	1	NA	NA	NA	-83808	NM_145839	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.035000	0.472637	
mm_38622.1	chr4	142048436	142048636	-	1	NA	NA	NA	30638	NR_131014	78917	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.020000	0.557214	
mm_2707.1	chr1	128044384	128044584	+	1	NA	NA	NA	57987	NM_027678	226409	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0.005000	0.432836	
mm_98782.1	chr11	96830103	96830303	+	1	NA	NA	NA	-235	NM_008686	18023	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	0.050000	0.577114	86(GTCCTTTAAGGC,-,0.00),88(CCTTTAAGGCAG,+,0.00)
mm_152340.1	chr19	9982422	9982622	-	1	NA	NA	NA	-124	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.080000	0.676617	
mm_147249.1	chr18	38584908	38585108	-	1	NA	NA	NA	16260	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.015000	0.407960	
mm_133046.1	chr16	57569613	57569813	+	1	NA	NA	NA	20471	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.015000	0.437811	
mm_68104.1	chr7	102017562	102017762	-	1	NA	NA	NA	493	NM_010531	16068	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.020000	0.517413	
mm_71505.1	chr8	46818731	46818931	+	1	NA	NA	NA	79086	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.010000	0.402985	37(AGCTATAAAAAA,-,0.00)
mm_55131.1	chr6	50654343	50654543	-	1	NA	NA	NA	-50	NM_021892	60531	Mm.157158	NM_021892	ENSMUSG00000029831	Npvf	Rfrp	neuropeptide VF precursor	protein-coding	0.015000	0.323383	
mm_136048.1	chr16	78576272	78576472	-	1	NA	NA	NA	316	NM_001252438	67102	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.110000	0.676617	
mm_54442.1	chr6	34419378	34419578	-	1	NA	NA	NA	7116	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.005000	0.402985	
mm_169328.1	chr14	117546475	117546675	+	1	NA	NA	NA	407272	NR_105747	102465148		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0.055000	0.631841	
mm_17267.1	chr2	26021629	26021829	-	1	NA	NA	NA	31	NM_133835	98766	Mm.247824	NM_133835	ENSMUSG00000036352	Ubac1	1110033G07Rik|AA407978|GBDR1|Gdbr1|Kpc2|Ubadc1	ubiquitin associated domain containing 1	protein-coding	0.125000	0.691542	
mm_113317.1	chr13	30764690	30764890	+	1	NA	NA	NA	15557	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.015000	0.407960	
mm_77907.1	chr9	7349114	7349314	+	1	NA	NA	NA	1840	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.452736	
mm_31809.1	chr4	65617577	65617777	+	1	NA	NA	NA	12691	NM_001161782	69807	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0.010000	0.412935	
mm_91555.1	chr10	39960080	39960280	-	1	NA	NA	NA	-27	NM_001173500	100041085	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	0.040000	0.512438	
mm_138372.1	chr17	35001302	35001502	+	1	NA	NA	NA	495	NM_011690	22321	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.080000	0.676617	
mm_90864.1	chr10	8885955	8886155	-	1	NA	NA	NA	15	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.095000	0.681592	
mm_133819.1	chr16	95719820	95720020	+	1	NA	NA	NA	17513	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.005000	0.373134	
mm_134026.1	chr16	5009078	5009278	-	1	NA	NA	NA	1862	NR_045596	432995	Mm.271618	NM_001253796	ENSMUSG00000096215	Smim22	EG432995|Gm5480	small integral membrane protein 22	protein-coding	0.015000	0.572139	
mm_101051.1	chr11	8663954	8664154	-	1	NA	NA	NA	481	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.050000	0.597015	
mm_125599.1	chr15	59653009	59653209	+	1	NA	NA	NA	4455	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.020000	0.437811	
mm_14223.1	chr2	127363133	127363333	+	1	NA	NA	NA	-53	NM_009633	11552	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	0.100000	0.701493	
mm_122786.1	chr14	54413826	54414026	-	1	NA	NA	NA	3753	NM_001253679	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.020000	0.606965	
mm_142734.1	chr17	48387879	48388079	-	1	NA	NA	NA	12601	NM_001347402	18044	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	0.000000	0.557214	
mm_1581.1	chr1	74284394	74284594	+	1	NA	NA	NA	244	NM_146110	227290	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	0.055000	0.646766	
mm_68902.1	chr7	126452983	126453183	-	1	NA	NA	NA	9990	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.015000	0.517413	
mm_153845.1	chr19	46332787	46332987	-	1	NA	NA	NA	4703	NM_133694	68431	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	0.010000	0.582090	
mm_7644.1	chr1	128128821	128129021	-	1	NA	NA	NA	25615	NM_181750	226412	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	0.005000	0.477612	
mm_107536.1	chr12	40560172	40560372	+	1	NA	NA	NA	114219	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.025000	0.383085	
mm_13115.1	chr2	91650025	91650225	+	1	NA	NA	NA	7	NR_027371	228359	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	0.060000	0.592040	
mm_5696.1	chr1	43186688	43186888	-	1	NA	NA	NA	9973	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.000000	0.572139	
mm_6974.1	chr1	86350933	86351133	-	1	NA	NA	NA	252	NR_028478	100303740	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	0.005000	0.388060	12(ACTTTAATAGTG,+,0.00)
mm_133233.1	chr16	77013683	77013883	+	1	NA	NA	NA	-286	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.155000	0.771144	
mm_120054.1	chr14	56672307	56672507	+	1	NA	NA	NA	4159	NM_023773	75339	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	0.005000	0.368159	5(ATCTTTATAAAG,-,0.00),7(CTTTATAAAGTT,+,0.00)
mm_106043.1	chr11	116079353	116079553	-	1	NA	NA	NA	-1492	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.020000	0.616915	
mm_5171.1	chr1	10232884	10233084	-	1	NA	NA	NA	-314	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.145000	0.746269	
mm_131622.1	chr16	19764964	19765164	+	1	NA	NA	NA	4830	NM_001159407	108105	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	0.005000	0.308458	
mm_130266.1	chr15	96688234	96688434	-	1	NA	NA	NA	11364	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.020000	0.517413	
mm_2120.1	chr1	87891815	87892015	+	1	NA	NA	NA	-37616	NR_136921	100503175	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.005000	0.522388	
mm_50334.1	chr6	48467733	48467933	+	1	NA	NA	NA	19604	NM_173428	243369	Mm.25039	NM_173428	ENSMUSG00000029797	Sspo	C79529|Scospondin	SCO-spondin	protein-coding	0.015000	0.577114	
mm_109483.1	chr12	111429122	111429322	+	1	NA	NA	NA	11777	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.030000	0.552239	-88(CCTTATCTGGGC,+,0.00),67(CTTCTTATGGGC,+,0.00)
mm_45240.1	chr5	53707461	53707661	-	1	NA	NA	NA	143	NM_009827	12425	Mm.3521	NM_009827	ENSMUSG00000029193	Cckar	AW106902	cholecystokinin A receptor	protein-coding	0.005000	0.611940	
mm_132960.1	chr16	50072508	50072708	+	1	NA	NA	NA	244	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.010000	0.412935	
mm_172684.1	chr8	55567202	55567402	-	1	NA	NA	NA	339662	NM_175939	244486	Mm.67684	NM_175939	ENSMUSG00000046258	Adam29	-	a disintegrin and metallopeptidase domain 29	protein-coding	0.020000	0.572139	
mm_97880.1	chr11	83224365	83224565	+	1	NA	NA	NA	889	NR_015519	100043636	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0.020000	0.432836	
mm_76656.1	chr8	93197680	93197880	-	1	NA	NA	NA	24	NM_053200	104158	Mm.292803	NM_053200	ENSMUSG00000056973	Ces1d	Ces3|TGH	carboxylesterase 1D	protein-coding	0.010000	0.427861	
mm_70141.1	chr7	143423658	143423858	-	1	NA	NA	NA	37292	NM_009876	12577	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.005000	0.512438	
mm_83092.1	chr9	40321067	40321267	-	1	NA	NA	NA	-12305	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.020000	0.562189	
mm_31750.1	chr4	63344554	63344754	+	1	NA	NA	NA	98	NM_008768	18405	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding	0.025000	0.552239	
mm_125258.1	chr15	35370984	35371184	+	1	NA	NA	NA	-462	NM_177151	666173	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0.030000	0.477612	
mm_61644.1	chr7	80372353	80372553	+	1	NA	NA	NA	-1078	NM_172903	140481	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	0.000000	0.462687	-33(CCTTATAAAAAC,+,0.00),-33(CCTTATAAAAAC,-,0.00)
mm_138511.1	chr17	35236575	35236775	+	1	NA	NA	NA	79	NM_023179	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.050000	0.597015	
mm_31976.1	chr4	88353807	88354007	+	1	NA	NA	NA	85019	NM_025760	66775	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.005000	0.467662	
mm_114498.1	chr13	69959794	69959994	+	1	NA	NA	NA	61	NR_138559	67550	Mm.158159	NR_138559		4933416O17Rik	-	RIKEN cDNA 4933416O17 gene	ncRNA	0.010000	0.432836	
mm_80572.1	chr9	83939031	83939231	+	1	NA	NA	NA	-9650	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.000000	0.412935	
mm_149327.1	chr19	10842749	10842949	+	1	NA	NA	NA	305	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.015000	0.532338	
mm_113501.1	chr13	37542965	37543165	+	1	NA	NA	NA	197720	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.035000	0.562189	
mm_48456.1	chr5	140760408	140760608	-	1	NA	NA	NA	36381	NM_173405	231842	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.030000	0.582090	
mm_140821.1	chr17	23586142	23586342	-	1	NA	NA	NA	13245	NM_011747	22654	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	4933429B21|AI835008|Krox-8|Rhit|Zfp-13	zinc finger protein 13	protein-coding	0.020000	0.562189	
mm_88063.1	chr10	67647137	67647337	+	1	NA	NA	NA	-98282	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.020000	0.477612	
mm_20002.1	chr2	119029254	119029454	-	1	NA	NA	NA	39	NM_199310	269336	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	0.055000	0.562189	
mm_12227.1	chr2	68421121	68421321	+	1	NA	NA	NA	50760	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.010000	0.517413	
mm_87858.1	chr10	61175292	61175492	+	1	NA	NA	NA	130	NM_023064	65971	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.010000	0.457711	-34(ATGTATATAAGG,-,0.00)
mm_136460.1	chr16	95290377	95290577	-	1	NA	NA	NA	32919	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.005000	0.452736	
mm_147679.1	chr18	60660094	60660294	-	1	NA	NA	NA	-3216	NR_045401	328963	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.010000	0.542289	
mm_93334.1	chr10	99467247	99467447	-	1	NA	NA	NA	-141824	NR_038019	100504202	Mm.403801	NR_038019		Gm20110	-	predicted gene, 20110	ncRNA	0.010000	0.462687	
mm_126061.1	chr15	77015839	77016039	+	1	NA	NA	NA	6788	NM_001164048	17189	Mm.404074	NM_013593	ENSMUSG00000018893	Mb	AI325109	myoglobin	protein-coding	0.025000	0.577114	
mm_172513.1	chr7	76832751	76832951	+	1	NA	NA	NA	602964	NM_001199224	244071	Mm.322829	NM_172902	ENSMUSG00000025754	Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding	0.065000	0.641791	
mm_153283.1	chr19	37263766	37263966	-	1	NA	NA	NA	229	NR_040299	77059	Mm.251476	NR_040298		4931408D14Rik	-	RIKEN cDNA 4931408D14 gene	ncRNA	0.040000	0.512438	
mm_164371.1	chr16	24193766	24193966	+	1	NA	NA	NA	-199484	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.020000	0.542289	
mm_94378.1	chr11	5136171	5136371	+	1	NA	NA	NA	15951	NM_080595	140703	Mm.840	NM_080595	ENSMUSG00000034164	Emid1	AW122071|CO-5|Emu1	EMI domain containing 1	protein-coding	0.025000	0.611940	
mm_50301.1	chr6	47595089	47595289	+	1	NA	NA	NA	-159	NM_001146689	14056	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.095000	0.651741	
mm_108756.1	chr12	89013172	89013372	+	1	NA	NA	NA	59882	NM_172544	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.000000	0.368159	
mm_123875.1	chr14	72604121	72604321	-	1	NA	NA	NA	105782	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.000000	0.407960	19(GCCTTTAAATAG,-,0.00),21(CTTTAAATAGGG,+,0.00)
mm_156547.1	chrX	151359240	151359440	+	1	NA	NA	NA	15117	NM_198105	207375	Mm.391339	NM_198105	ENSMUSG00000025262	Fam120c	D930001I21Rik|ORF34	family with sequence similarity 120, member C	protein-coding	0.000000	0.353234	
mm_77750.1	chr8	128438231	128438431	-	1	NA	NA	NA	79090	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.005000	0.402985	
mm_156102.1	chrX	113298141	113298341	+	1	NA	NA	NA	-15	NM_033605	93837	Mm.79760	NM_033605	ENSMUSG00000025592	Dach2	9430028N04Rik	dachshund 2 (Drosophila)	protein-coding	0.055000	0.656716	
mm_42610.1	chr5	117909926	117910126	+	1	NA	NA	NA	43187	NM_008712	18125	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.015000	0.512438	
mm_6449.1	chr1	74008437	74008637	-	1	NA	NA	NA	115910	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.010000	0.587065	
mm_171272.1	chr3	88775111	88775311	+	1	NA	NA	NA	-1846	NR_028359	100302730	Mm.482358	NR_028359		5830417I10Rik	3632445O20Rik|AA387005	gon-4-like pseudogene	pseudo	0.100000	0.646766	
mm_9161.1	chr1	170960995	170961195	-	1	NA	NA	NA	14976	NM_001077189	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.020000	0.522388	
mm_41412.1	chr5	90787519	90787719	+	1	NA	NA	NA	1518	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.010000	0.328358	
mm_110534.1	chr12	55015606	55015806	-	1	NA	NA	NA	-29370	NM_013815	217578	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.020000	0.417910	
mm_162717.1	chr10	34673500	34673700	+	1	NA	NA	NA	190200	NM_010237	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.005000	0.402985	
mm_167965.1	chrX	151520916	151521116	-	1	NA	NA	NA	344	NM_001113354	320595	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	0.075000	0.676617	
mm_108585.1	chr12	85199549	85199749	+	1	NA	NA	NA	-19832	NM_145445	217715	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	0.020000	0.562189	
mm_65566.1	chr7	27178722	27178922	-	1	NA	NA	NA	61	NM_029391	19342	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	0.110000	0.716418	
mm_165601.1	chr3	50175787	50175987	+	1	NA	NA	NA	267726	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.368159	
mm_32738.1	chr4	116610897	116611097	+	1	NA	NA	NA	-13367	NR_029450	654318	Mm.255685	NR_029450	ENSMUSG00000085408	C530005A16Rik	D930044c15rik	RIKEN cDNA C530005A16 gene	ncRNA	0.000000	0.388060	
mm_8067.1	chr1	135470612	135470812	-	1	NA	NA	NA	-16029	NR_049188	100885827		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0.025000	0.592040	
mm_81196.1	chr9	107554578	107554778	+	1	NA	NA	NA	95	NM_019713	56289	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0.130000	0.666667	
mm_79929.1	chr9	65630979	65631179	+	1	NA	NA	NA	497	NM_028030	71973	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	0.115000	0.771144	
mm_156884.1	chrX	166344912	166345112	+	1	NA	NA	NA	459	NM_001177960	14758	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	0.015000	0.482587	
mm_141993.1	chr17	35175952	35176152	-	1	NA	NA	NA	-51	NM_019467	11629	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.010000	0.567164	
mm_146148.1	chr18	74787042	74787242	+	1	NA	NA	NA	7930	NM_177470	52538	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	0.035000	0.487562	
mm_143733.1	chr17	81419761	81419961	-	1	NA	NA	NA	318526	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.010000	0.477612	
mm_96515.1	chr11	68475348	68475548	+	1	NA	NA	NA	-27571	NM_001004435	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.010000	0.527363	
mm_70230.1	chr7	145284301	145284501	-	1	NA	NA	NA	-390	NR_132642	233979	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.005000	0.457711	-34(CGTCTTATAAGG,-,0.00),-32(TCTTATAAGGCT,+,0.00)
mm_107955.1	chr12	72441887	72442087	+	1	NA	NA	NA	121	NM_030070	78257	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	0.040000	0.577114	
mm_12635.1	chr2	74705259	74705459	+	1	NA	NA	NA	-130	NM_001290730	15437	Mm.280673	NM_008276	ENSMUSG00000027102	Hoxd8	4921540P06Rik|AI047735|Hox-4.3|Hox-5.4	homeobox D8	protein-coding	0.195000	0.845771	
mm_51355.1	chr6	72558711	72558911	+	1	NA	NA	NA	9164	NM_001271395	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.010000	0.527363	
mm_106854.1	chr12	8008505	8008705	+	1	NA	NA	NA	30928	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.368159	
mm_90377.1	chr10	127242624	127242824	+	1	NA	NA	NA	20639	NM_008447	16572	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	0.025000	0.527363	
mm_13101.1	chr2	91265184	91265384	+	1	NA	NA	NA	169	NM_023854	77038	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0.110000	0.621891	
mm_23132.1	chr3	37761124	37761324	+	1	NA	NA	NA	-36864	NM_198657	381438	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.015000	0.497512	
mm_70921.1	chr8	25785500	25785700	+	1	NA	NA	NA	9	NM_026032	67207	Mm.30198	NM_026032	ENSMUSG00000037296	Lsm1	2810025O06Rik|CASM	LSM1 homolog, mRNA degradation associated	protein-coding	0.130000	0.681592	
mm_9376.1	chr1	172210123	172210323	-	1	NA	NA	NA	-3419	NM_011063	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.010000	0.537313	
mm_92457.1	chr10	77897822	77898022	-	1	NA	NA	NA	4502	NR_015547	75188	Mm.348012	NM_029200	ENSMUSG00000096573	1700009J07Rik	4930535B06Rik	RIKEN cDNA 1700009J07 gene	ncRNA	0.015000	0.557214	
mm_169786.1	chr16	11511542	11511742	-	1	NA	NA	NA	105994	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.050000	0.467662	-30(CCCTATAAAAAC,-,0.00)
mm_42591.1	chr5	117363405	117363605	+	1	NA	NA	NA	6200	NM_021539	59043	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	0.025000	0.587065	
mm_126160.1	chr15	78428561	78428761	+	1	NA	NA	NA	97	NR_110357	72844	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	0.100000	0.741294	
mm_100414.1	chr11	119427920	119428120	+	1	NA	NA	NA	37548	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.015000	0.502488	
mm_53799.1	chr6	146795957	146796157	+	1	NA	NA	NA	-9473	NM_172309	272322	Mm.333500	NM_172309	ENSMUSG00000040187	Arntl2	4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding	0.080000	0.721393	
mm_59474.1	chr7	27452343	27452543	+	1	NA	NA	NA	25	NM_001290525	233016	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0.025000	0.527363	
mm_110600.1	chr12	56535858	56536058	-	1	NA	NA	NA	950	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.060000	0.631841	
mm_46027.1	chr5	91402783	91402983	-	1	NA	NA	NA	111	NM_007568	12223	Mm.2024	NM_007568	ENSMUSG00000082361	Btc	Bcn	betacellulin, epidermal growth factor family member	protein-coding	0.030000	0.621891	
mm_40041.1	chr5	33820665	33820865	+	1	NA	NA	NA	-22347	NM_175231	107823	Mm.19892	NM_175231	ENSMUSG00000057406	Whsc1	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|NSD2|Whsc1l|mKIAA1090	Wolf-Hirschhorn syndrome candidate 1 (human)	protein-coding	0.200000	0.865672	
mm_144396.1	chr18	20673713	20673913	+	1	NA	NA	NA	8563	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.015000	0.432836	-4(TGCTCTATAAAC,-,0.00)
mm_169867.1	chr1	63446296	63446496	+	1	NA	NA	NA	505	NM_011780	23792	Mm.124892	NM_011780	ENSMUSG00000025964	Adam23	AW046396|MDC3	a disintegrin and metallopeptidase domain 23	protein-coding	0.120000	0.766169	
mm_165600.1	chr3	49757252	49757452	-	1	NA	NA	NA	-36	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding	0.075000	0.601990	
mm_9275.1	chr1	171634061	171634261	-	1	NA	NA	NA	7739	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.005000	0.477612	
mm_82949.1	chr9	35558412	35558612	-	1	NA	NA	NA	-42	NM_013932	30959	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	0.160000	0.796020	
mm_132226.1	chr16	32650673	32650873	+	1	NA	NA	NA	6130	NM_016788	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.000000	0.353234	
mm_120175.1	chr14	61138370	61138570	+	1	NA	NA	NA	13	NM_172809	50720	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik|mKIAA0730	sacsin	protein-coding	0.030000	0.507463	
mm_107066.1	chr12	16812293	16812493	+	1	NA	NA	NA	1428	NM_033270	50496	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	0.020000	0.373134	14(CGCTCTAAATGA,-,0.00)
mm_155386.1	chrX	71816693	71816893	+	1	NA	NA	NA	35	NM_001290780	67048	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding	0.155000	0.731343	
mm_76052.1	chr8	77689094	77689294	-	1	NA	NA	NA	35258	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	0.020000	0.507463	-65(GGGTATATGAGC,-,0.00)
mm_68577.1	chr7	115846059	115846259	-	1	NA	NA	NA	-19	NM_001277326	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.005000	0.427861	
mm_154280.1	chr19	60790611	60790811	-	1	NA	NA	NA	-18	NM_010123	13669	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	0.155000	0.736318	
mm_21307.1	chr2	157079144	157079344	-	1	NA	NA	NA	21	NM_001164663	320706	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.170000	0.855721	
mm_101671.1	chr11	37235979	37236179	-	1	NA	NA	NA	-291838	NM_011856	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.065000	0.616915	
mm_27978.1	chr3	80879606	80879806	-	1	NA	NA	NA	32412	NM_001345996	14658	Mm.275639	NM_010298	ENSMUSG00000028020	Glrb	AI853901|Glyrb|spa|spastic	glycine receptor, beta subunit	protein-coding	0.015000	0.457711	
mm_324.1	chr1	24678635	24678835	+	1	NA	NA	NA	-183	NM_001310483	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.100000	0.676617	
mm_164523.1	chr17	3410843	3411043	+	1	NA	NA	NA	13736	NM_011878	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.010000	0.442786	
mm_136508.1	chr16	97170436	97170636	-	1	NA	NA	NA	199	NM_031174	13508	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	Down syndrome cell adhesion molecule	protein-coding	0.185000	0.845771	
mm_108802.1	chr12	91694932	91695132	+	1	NA	NA	NA	91404	NM_175367	108800	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.005000	0.407960	-10(TTTTTAATAGAC,+,0.00)
mm_151152.1	chr19	53142677	53142877	+	1	NA	NA	NA	21	NM_001164100	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.090000	0.676617	79(GGCTTTAAATGA,-,0.00)
mm_94317.1	chr11	4236349	4236549	+	1	NA	NA	NA	-336	NM_001013365	18413	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.025000	0.577114	
mm_37520.1	chr4	124668094	124668294	-	1	NA	NA	NA	10548	NM_011141	18991	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0.020000	0.517413	
mm_36540.1	chr4	86660109	86660309	-	1	NA	NA	NA	9850	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.015000	0.447761	
mm_118374.1	chr13	117014669	117014869	-	1	NA	NA	NA	10747	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.010000	0.462687	
mm_29703.1	chr3	123236017	123236217	-	1	NA	NA	NA	32	NM_080451	118449	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	0.075000	0.666667	
mm_22176.1	chr2	173213818	173214018	-	1	NA	NA	NA	5004	NM_021394	58203	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.000000	0.407960	
mm_19267.1	chr2	84938322	84938522	-	1	NA	NA	NA	1776	NM_021398	58207	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	0.010000	0.582090	
mm_19942.1	chr2	116067261	116067461	-	1	NA	NA	NA	83	NM_001346047	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.040000	0.621891	
mm_62874.1	chr7	114745819	114746019	+	1	NA	NA	NA	153	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	0.060000	0.631841	
mm_142929.1	chr17	54297090	54297290	-	1	NA	NA	NA	1844	NM_022025	63993	Mm.155241	NM_022025	ENSMUSG00000023945	Slc5a7	CHT1	solute carrier family 5 (choline transporter), member 7	protein-coding	0.015000	0.402985	
mm_135266.1	chr16	38341736	38341936	-	1	NA	NA	NA	24	NM_001081025	320214	Mm.294342	NM_177104	ENSMUSG00000022805	Maats1	4932425I24Rik|Aat1|Spata26	MYCBP-associated, testis expressed 1	protein-coding	0.045000	0.606965	
mm_76619.1	chr8	91656614	91656814	-	1	NA	NA	NA	144940	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.000000	0.353234	
mm_141774.1	chr17	34287032	34287232	-	1	NA	NA	NA	639	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.015000	0.457711	
mm_110252.1	chr12	31634357	31634557	-	1	NA	NA	NA	140	NM_007530	12033	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	0.105000	0.611940	
mm_61272.1	chr7	66689848	66690048	+	1	NA	NA	NA	59	NR_034030	72635	Mm.289796	NM_152815	ENSMUSG00000053091	Lins1	2700083B01Rik|AW547219|Lins|Lins2|Wins2	lines homolog 1	protein-coding	0.060000	0.656716	
mm_14478.1	chr2	131506505	131506705	+	1	NA	NA	NA	14743	NM_001177838	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.005000	0.577114	-100(CCTTTTCTGCCC,+,0.00),-34(TGCTATATAGGC,-,0.00)
mm_4459.1	chr1	172699211	172699411	+	1	NA	NA	NA	1255	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding	0.000000	0.268657	
mm_167647.1	chr9	65262710	65262910	+	1	NA	NA	NA	-2370	NM_173385	214425	Mm.138455	NM_173385	ENSMUSG00000042254	Cilp	9830114D16|C130036G17Rik	cartilage intermediate layer protein, nucleotide pyrophosphohydrolase	protein-coding	0.005000	0.452736	
mm_126363.1	chr15	80091255	80091455	+	1	NA	NA	NA	21	NM_207708	20972	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0.160000	0.796020	
mm_114792.1	chr13	89540718	89540918	+	1	NA	NA	NA	182	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.030000	0.537313	
mm_92688.1	chr10	80656895	80657095	-	1	NA	NA	NA	76	NM_145361	208198	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0.020000	0.592040	
mm_100668.1	chr11	3334154	3334354	-	1	NA	NA	NA	3523	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.005000	0.417910	
mm_56225.1	chr6	90318745	90318945	-	1	NA	NA	NA	6340	NM_027928	71797	Mm.49071	NM_027928	ENSMUSG00000056643	Chst13	1110067M19Rik|C4ST-3	carbohydrate (chondroitin 4) sulfotransferase 13	protein-coding	0.000000	0.517413	
mm_51657.1	chr6	86105090	86105290	+	1	NA	NA	NA	27142	NM_001271859	11519	Mm.104155	NM_013458	ENSMUSG00000030000	Add2	2900072M03Rik|add97	adducin 2 (beta)	protein-coding	0.005000	0.417910	
mm_140971.1	chr17	24695987	24696187	-	1	NA	NA	NA	69	NM_023040	11692	Mm.28124	NM_023040	ENSMUSG00000040888	Gfer	Alr|ERV1	growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)	protein-coding	0.160000	0.776119	
mm_94881.1	chr11	24855328	24855528	+	1	NA	NA	NA	-124706	NR_033491	100038617	Mm.387376	NR_033491	ENSMUSG00000073103	Gm10466	ENSMUSG00000073103	predicted gene 10466	ncRNA	0.000000	0.487562	
mm_69965.1	chr7	142376568	142376768	-	1	NA	NA	NA	-2922	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.025000	0.517413	
mm_64595.1	chr7	3203791	3203991	-	1	NA	NA	NA	-14735	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.005000	0.482587	
mm_153027.1	chr19	31664309	31664509	-	1	NA	NA	NA	-39	NM_011160	19091	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0.060000	0.592040	
mm_105723.1	chr11	109011747	109011947	-	1	NA	NA	NA	91498	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.095000	0.651741	
mm_125156.1	chr15	31027677	31027877	+	1	NA	NA	NA	-11349	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.015000	0.383085	
mm_39563.1	chr5	23314228	23314428	+	1	NA	NA	NA	120025	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.005000	0.432836	
mm_782.1	chr1	44795625	44795825	+	1	NA	NA	NA	-50776	NR_040602	75066	Mm.416932	NR_040602	ENSMUSG00000101701	4930521E06Rik	-	RIKEN cDNA 4930521E06 gene	ncRNA	0.005000	0.308458	
mm_95332.1	chr11	46750513	46750713	+	1	NA	NA	NA	102	NM_001166631	171283	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	0.005000	0.412935	-77(GGGCTTAAAAGT,-,0.00)
mm_110819.1	chr12	72408568	72408768	-	1	NA	NA	NA	386	NM_001286448	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.085000	0.686567	
mm_35248.1	chr4	19877536	19877736	-	1	NA	NA	NA	44930	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.010000	0.343284	
mm_169487.1	chr14	73797210	73797410	-	1	NA	NA	NA	244524	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	0.050000	0.477612	
mm_117669.1	chr13	93630700	93630900	-	1	NA	NA	NA	6958	NM_016668	12116	Mm.329582	NM_016668	ENSMUSG00000074768	Bhmt	-	betaine-homocysteine methyltransferase	protein-coding	0.005000	0.407960	
mm_54221.1	chr6	26766768	26766968	-	1	NA	NA	NA	835442	NR_040771	626904	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.015000	0.422886	
mm_120004.1	chr14	55650065	55650265	+	1	NA	NA	NA	-19	NM_001253888	71099	Mm.171300	NM_027673	ENSMUSG00000007591	Tssk4	1700020B19Rik|4933424F08Rik|TSK-4|TSSK-4	testis-specific serine kinase 4	protein-coding	0.005000	0.452736	
mm_46764.1	chr5	112252419	112252619	-	1	NA	NA	NA	-1	NM_021351	12959	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0.010000	0.527363	-33(GCCTATAAGAGC,-,0.00)
mm_150492.1	chr19	39011592	39011792	+	1	NA	NA	NA	4673	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.025000	0.512438	
mm_2488.1	chr1	105990585	105990785	+	1	NA	NA	NA	279	NM_001122675	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.175000	0.810945	
mm_41006.1	chr5	81019648	81019848	+	1	NA	NA	NA	-823	NM_001347367	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.125000	0.761194	
mm_153227.1	chr19	34879126	34879326	-	1	NA	NA	NA	229	NM_001114339	75735	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	0.075000	0.606965	-32(CCCTTTAGGCTC,+,0.00)
mm_12656.1	chr2	75248374	75248574	+	1	NA	NA	NA	195705	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA	0.015000	0.358209	
mm_35480.1	chr4	40853799	40853999	-	1	NA	NA	NA	638	NM_022305	14595	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0.115000	0.726368	70(CCCTCTTAAAGC,-,0.00),71(CCTCTTAAAGCC,+,0.00)
mm_151673.1	chr19	4190952	4191152	-	1	NA	NA	NA	-5	NM_178650	108995	Mm.288312	NM_178650	ENSMUSG00000040247	Tbc1d10c	1810062O14Rik|AI428527	TBC1 domain family, member 10c	protein-coding	0.005000	0.641791	
mm_106321.1	chr11	118303469	118303669	-	1	NA	NA	NA	-13325	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.010000	0.537313	
mm_110111.1	chr12	26443417	26443617	-	1	NA	NA	NA	12935	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.005000	0.432836	
mm_124257.1	chr14	102072236	102072436	-	1	NA	NA	NA	231713	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.010000	0.542289	10(CCCTAAATGCCC,+,0.00)
mm_167136.1	chr7	127218423	127218623	+	1	NA	NA	NA	-78	NM_017461	54204	Mm.18	NM_017461	ENSMUSG00000000486	Sept1	Diff6|Pnutl3	septin 1	protein-coding	0.015000	0.547264	
mm_73754.1	chr8	114869471	114869671	+	1	NA	NA	NA	429919	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.020000	0.447761	
mm_119949.1	chr14	55015451	55015651	+	1	NA	NA	NA	97	NM_026890	68966	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	0.045000	0.477612	
mm_89366.1	chr10	88605049	88605249	+	1	NA	NA	NA	3	NM_001252372	109272	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0.050000	0.547264	
mm_80489.1	chr9	78395722	78395922	+	1	NA	NA	NA	45	NM_001191044	100048658	Mm.158166	NM_001191044	ENSMUSG00000070291	Ddx43	ENSMUSG00000070291|OTTMUSG00000019690	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	protein-coding	0.140000	0.721393	
mm_55513.1	chr6	70059134	70059334	-	1	NA	NA	NA	-732060	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.472637	
mm_55585.1	chr6	71440322	71440522	-	1	NA	NA	NA	215	NM_024288	68477	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.175000	0.781095	
mm_37654.1	chr4	128806354	128806554	-	1	NA	NA	NA	-342	NM_001081098	230761	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.185000	0.850746	
mm_68113.1	chr7	102072324	102072524	-	1	NA	NA	NA	1205	NM_011644	102443351	Mm.292904	NM_011644	ENSMUSG00000070425	Xntrpc	Xndr-trpc2	Xndc1-transient receptor potential cation channel, subfamily C, member 2 readthrough	protein-coding	0.005000	0.462687	
mm_35881.1	chr4	49538186	49538386	-	1	NA	NA	NA	11260	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.005000	0.467662	
mm_124205.1	chr14	98994230	98994430	-	1	NA	NA	NA	51806	NM_175245	76789	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0.030000	0.422886	-52(TCTTTTAAAAAC,+,0.00)
mm_33371.1	chr4	129515058	129515258	+	1	NA	NA	NA	1577	NM_010807	17357	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0.010000	0.651741	
mm_43842.1	chr5	143038934	143039134	+	1	NA	NA	NA	73986	NM_207110	108086	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.005000	0.487562	
mm_133750.1	chr16	94370697	94370897	+	1	NA	NA	NA	58	NM_009441	22129	Mm.213408	NM_009441	ENSMUSG00000040785	Ttc3	2610202A04Rik|AA409221|D16Ium21|D16Ium21e|TPRD|mKIAA4119	tetratricopeptide repeat domain 3	protein-coding	0.150000	0.761194	
mm_14152.1	chr2	126567649	126567849	+	1	NA	NA	NA	14725	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0.025000	0.412935	
mm_55728.1	chr6	76498004	76498204	-	1	NA	NA	NA	-744613	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.080000	0.582090	-91(GGGTATTTAAAG,-,0.00)
mm_133836.1	chr16	96127449	96127649	+	1	NA	NA	NA	176	NM_008251	15312	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	0.140000	0.701493	
mm_4428.1	chr1	172505789	172505989	+	1	NA	NA	NA	5643	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.020000	0.587065	
mm_93776.1	chr10	120476146	120476346	-	1	NA	NA	NA	223	NM_001347170	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0.065000	0.641791	
mm_24151.1	chr3	88351005	88351205	+	1	NA	NA	NA	-13484	NM_198410	68957	Mm.441486	NM_198410	ENSMUSG00000041423	Paqr6	1500001B10Rik	progestin and adipoQ receptor family member VI	protein-coding	0.040000	0.572139	
mm_62239.1	chr7	98703065	98703265	+	1	NA	NA	NA	-198	NM_028410	72981	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0.115000	0.761194	
mm_59651.1	chr7	28169650	28169850	+	1	NA	NA	NA	2	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.145000	0.671642	
mm_159264.1	chr2	156007819	156008019	-	1	NA	NA	NA	58	NM_001145352	320095	Mm.442175	NM_001145351	ENSMUSG00000074646	6430550D23Rik	-	RIKEN cDNA 6430550D23 gene	protein-coding	0.050000	0.626866	
mm_140436.1	chr17	88440981	88441181	+	1	NA	NA	NA	369	NM_180974	14236	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.115000	0.696517	
mm_73156.1	chr8	94994746	94994946	+	1	NA	NA	NA	10447	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.005000	0.507463	
mm_60923.1	chr7	46846194	46846394	+	1	NA	NA	NA	490	NR_102727	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.075000	0.577114	
mm_41060.1	chr5	86816663	86816863	+	1	NA	NA	NA	12273	NM_177680	231386	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.015000	0.393035	
mm_127529.1	chr15	102098371	102098571	+	1	NA	NA	NA	-4517	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.010000	0.552239	
mm_118840.1	chr14	25644634	25644834	+	1	NA	NA	NA	41221	NM_001309430	100188919	Mm.473810	NM_001309430		Israa	-	immune system released activating agent	protein-coding	0.020000	0.567164	
mm_22631.1	chr3	14767433	14767633	+	1	NA	NA	NA	10927	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.010000	0.427861	
mm_128669.1	chr15	60187079	60187279	-	1	NA	NA	NA	-170561	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.005000	0.427861	
mm_76332.1	chr8	84706408	84706608	-	1	NA	NA	NA	5051	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.025000	0.398010	
mm_75277.1	chr8	40992731	40992931	-	1	NA	NA	NA	-24637	NR_015457	78849	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	0.025000	0.447761	
mm_168351.1	chr1	113903957	113904157	-	1	NA	NA	NA	-1781080	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.045000	0.547264	
mm_102284.1	chr11	55399164	55399364	-	1	NA	NA	NA	20816	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.030000	0.542289	
mm_53165.1	chr6	125322786	125322986	+	1	NA	NA	NA	1546	NM_011324	20276	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0.035000	0.527363	
mm_29044.1	chr3	103020843	103021043	-	1	NA	NA	NA	397	NM_144901	229663	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0.095000	0.681592	
mm_114510.1	chr13	71487522	71487722	+	1	NA	NA	NA	380533	NR_130325	100316804		NR_130325	ENSMUSG00000080580	Mir466f-4	Mirn466f-4|mmu-mir-466f-4	microRNA 466f-4	ncRNA	0.015000	0.427861	31(GTCTTTAAAGTC,+,0.00)
mm_85794.1	chr9	109848605	109848805	-	1	NA	NA	NA	751	NM_009921	12796	Mm.3834	NM_009921	ENSMUSG00000038357	Camp	CAP18|Cnlp|Cramp|FALL39|MCLP	cathelicidin antimicrobial peptide	protein-coding	0.035000	0.532338	
mm_163131.1	chr11	78649050	78649250	-	1	NA	NA	NA	48275	NM_008702	18099	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0.005000	0.442786	
mm_118301.1	chr13	113093780	113093980	-	1	NA	NA	NA	7101	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.020000	0.437811	
mm_48297.1	chr5	138263025	138263225	-	1	NA	NA	NA	-920	NR_045821	69004	Mm.439868	NR_045821	ENSMUSG00000085227	6330418K02Rik	-	RIKEN cDNA 6330418K02 gene	ncRNA	0.015000	0.502488	
mm_152134.1	chr19	7028885	7029085	-	1	NA	NA	NA	-9516	NM_153795	108101	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.030000	0.517413	
mm_109543.1	chr12	111592561	111592761	+	1	NA	NA	NA	18151	NM_022801	17169	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	0.045000	0.502488	
mm_113338.1	chr13	31625813	31626013	+	1	NA	NA	NA	97	NM_010225	14238	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	0.150000	0.756219	
mm_19094.1	chr2	79391460	79391660	-	1	NA	NA	NA	37428	NM_001048176	228094	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0.000000	0.248756	
mm_68475.1	chr7	110851525	110851725	-	1	NA	NA	NA	-3310	NR_028551	100217456		NR_028551	ENSMUSG00000092887	Snord53	MBII-35	small nucleolar RNA, C/D box 53	snoRNA	0.015000	0.442786	
mm_152833.1	chr19	23273693	23273893	-	1	NA	NA	NA	104	NM_153808	226026	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	0.115000	0.696517	
mm_86924.1	chr10	23894755	23894955	+	1	NA	NA	NA	167	NM_011704	22361	Mm.27154	NM_011704	ENSMUSG00000037440	Vnn1	V-1	vanin 1	protein-coding	0.025000	0.442786	70(GTGTCTTAAAAG,-,0.00),72(GTCTTAAAAGCC,+,0.00)
mm_172855.1	chr9	39871941	39872141	-	1	NA	NA	NA	-1236	NM_146610	258603	Mm.271456	NM_146610	ENSMUSG00000094449	Olfr972	MOR171-17	olfactory receptor 972	protein-coding	0.010000	0.512438	-16(CCCCTTATAAGC,-,0.00),-14(CCTTATAAGCAC,+,0.00)
mm_166338.1	chr5	114777631	114777831	+	1	NA	NA	NA	2591	NM_026718	68420	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	0.030000	0.502488	
mm_57998.1	chr6	136173022	136173222	-	1	NA	NA	NA	389	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.025000	0.592040	
mm_49508.1	chr6	29853939	29854139	+	1	NA	NA	NA	298	NM_001347084	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.015000	0.527363	
mm_123902.1	chr14	73217063	73217263	-	1	NA	NA	NA	-10312	NR_030459	751541		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.005000	0.447761	
mm_144405.1	chr18	20961146	20961346	+	1	NA	NA	NA	16621	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.030000	0.467662	
mm_147388.1	chr18	44159834	44160034	-	1	NA	NA	NA	-49	NM_001281470	100042855	Mm.479515	NM_001165950	ENSMUSG00000069385	Gm10267	ENSMUSG00000069385|Vtlgl1	predicted gene 10267	protein-coding	0.010000	0.393035	
mm_83158.1	chr9	40465591	40465791	-	1	NA	NA	NA	-9927	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.020000	0.462687	70(TCATTTAAAGCG,+,0.00)
mm_74564.1	chr8	11008137	11008337	-	1	NA	NA	NA	193	NM_001081212	384783	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.150000	0.696517	
mm_39582.1	chr5	23465126	23465326	+	1	NA	NA	NA	30797	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.010000	0.343284	
mm_20057.1	chr2	120328354	120328554	-	1	NA	NA	NA	-14289	NM_001024145	271844	Mm.24880	NM_001024145	ENSMUSG00000046971	Pla2g4f	4732472I07Rik|Gm647|Pla2zeta	phospholipase A2, group IVF	protein-coding	0.015000	0.452736	
mm_128195.1	chr15	35062302	35062502	-	1	NA	NA	NA	93404	NM_019635	56274	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0.005000	0.452736	
mm_145675.1	chr18	61555867	61556067	+	1	NA	NA	NA	385	NM_146087	93687	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0.070000	0.572139	68(TTCCCTAAAAAG,-,0.00),70(CCCTAAAAAGGA,+,0.00)
mm_76153.1	chr8	82354240	82354440	-	1	NA	NA	NA	48246	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.015000	0.492537	
mm_159582.1	chr4	119233657	119233857	+	1	NA	NA	NA	-72	NM_001042411	56401	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	0.050000	0.592040	
mm_55778.1	chr6	81910326	81910526	-	1	NA	NA	NA	374	NR_046040	74220	Mm.490521	NR_046040	ENSMUSG00000101404	1700009C05Rik	-	RIKEN cDNA 1700009C05 gene	ncRNA	0.060000	0.562189	
mm_119125.1	chr14	31135612	31135812	+	1	NA	NA	NA	859	NM_027289	70021	Mm.261681	NM_027289	ENSMUSG00000071547	Nt5dc2	2510015F01Rik	5'-nucleotidase domain containing 2	protein-coding	0.025000	0.557214	
mm_115123.1	chr13	104287025	104287225	+	1	NA	NA	NA	-710	NR_136938	108154	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.020000	0.497512	
mm_85603.1	chr9	107566861	107567061	-	1	NA	NA	NA	-2202	NM_010489	15587	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	0.010000	0.537313	
mm_150361.1	chr19	34649088	34649288	+	1	NA	NA	NA	8299	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.005000	0.373134	
mm_95615.1	chr11	53519658	53519858	+	1	NA	NA	NA	22	NM_001347496	20362	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0.110000	0.766169	
mm_137602.1	chr17	28208225	28208425	+	1	NA	NA	NA	547	NM_027185	23853	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0.025000	0.542289	
mm_65149.1	chr7	19592720	19592920	-	1	NA	NA	NA	11541	NR_125835	53609	Mm.20913	NM_016680	ENSMUSG00000061028	Clasrp	Clasp|Sfrs16|Srsf16|Swap2	CLK4-associating serine/arginine rich protein	protein-coding	0.010000	0.552239	
mm_124499.1	chr14	121879308	121879508	-	1	NA	NA	NA	0	NR_130999	78312	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0.030000	0.527363	
mm_100848.1	chr11	5803233	5803433	-	1	NA	NA	NA	463	NM_018870	56012	Mm.219627	NM_018870	ENSMUSG00000020475	Pgam2	-	phosphoglycerate mutase 2	protein-coding	0.030000	0.592040	
mm_142161.1	chr17	36129407	36129607	-	1	NA	NA	NA	-82	NM_001177467	630294	Mm.484916	NM_001177467	ENSMUSG00000092243	Gm7030	EG630294|H2-t9	predicted gene 7030	protein-coding	0.000000	0.487562	9(TCCTAGAAAAGG,-,0.00)
mm_23501.1	chr3	60528152	60528352	+	1	NA	NA	NA	27073	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.015000	0.398010	
mm_139532.1	chr17	56680449	56680649	+	1	NA	NA	NA	7324	NM_027933	71810	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	0.020000	0.507463	
mm_126011.1	chr15	76616549	76616749	+	1	NA	NA	NA	203	NM_028064	72027	Mm.276829	NM_028064	ENSMUSG00000063354	Slc39a4	1600025H15Rik|AU041686|AWMS2|ZIP4	solute carrier family 39 (zinc transporter), member 4	protein-coding	0.055000	0.646766	
mm_133876.1	chr16	96386295	96386495	+	1	NA	NA	NA	24631	NM_028078	72058	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.010000	0.467662	
mm_52626.1	chr6	117174100	117174300	+	1	NA	NA	NA	5665	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.030000	0.552239	
mm_39534.1	chr5	21375663	21375863	+	1	NA	NA	NA	3090	NM_008013	14190	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.025000	0.477612	
mm_119861.1	chr14	54467867	54468067	+	1	NA	NA	NA	3820	NM_022993	65107	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	0.020000	0.606965	-17(ACTTTTATGGGG,+,0.00)
mm_162312.1	chr1	37584119	37584319	+	1	NA	NA	NA	-43203	NM_173870	269181	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.010000	0.472637	-77(GCCTCTTTATGG,-,0.00),49(GTTTAAATAGTG,+,0.00)
mm_48764.1	chr5	148399673	148399873	-	1	NA	NA	NA	131	NM_007513	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.105000	0.656716	
mm_109495.1	chr12	111449538	111449738	+	1	NA	NA	NA	6977	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.020000	0.587065	
mm_79499.1	chr9	57133660	57133860	+	1	NA	NA	NA	-2470	NR_102289	76794	Mm.472839	NR_102289	ENSMUSG00000086728	Man2c1os	2410133F24Rik|AI851351	mannosidase, alpha, class 2C, member 1, opposite strand	ncRNA	0.010000	0.398010	
mm_31720.1	chr4	62663596	62663796	+	1	NA	NA	NA	-10278	NM_001310706	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.000000	0.557214	
mm_117658.1	chr13	93192199	93192399	-	1	NA	NA	NA	-16	NM_133905	100715	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0.095000	0.641791	
mm_106238.1	chr11	117778909	117779109	-	1	NA	NA	NA	1612	NM_181321	217353	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.020000	0.582090	
mm_17220.1	chr2	25500157	25500357	-	1	NA	NA	NA	249	NM_027062	69379	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	0.025000	0.572139	
mm_11016.1	chr2	26591325	26591525	+	1	NA	NA	NA	-5	NR_106155	102465787		NR_106155	ENSMUSG00000105799	Mir126b	mmu-mir-126b	microRNA 126b	ncRNA	0.070000	0.577114	
mm_96814.1	chr11	69992426	69992626	+	1	NA	NA	NA	1156	NM_019749	56486	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0.030000	0.537313	
mm_111169.1	chr12	83606373	83606573	-	1	NA	NA	NA	-9326	NM_183154	217695	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0.000000	0.502488	
mm_168115.1	chr10	15520675	15520875	-	1	NA	NA	NA	-271002	NR_131087	77538	Mm.128235	NR_131087		C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0.010000	0.437811	
mm_73250.1	chr8	104322121	104322321	+	1	NA	NA	NA	-6	NM_028524	75502	Mm.232593	NM_028524	ENSMUSG00000035785	Cmtm2b	1700013O04Rik|Cklfsf22|Cklfsf2b	CKLF-like MARVEL transmembrane domain containing 2B	protein-coding	0.030000	0.582090	
mm_106758.1	chr12	4233945	4234145	+	1	NA	NA	NA	18	NM_001204912	69709	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.040000	0.542289	
mm_38415.1	chr4	139130903	139131103	-	1	NA	NA	NA	34	NR_033745	433771	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	0.095000	0.646766	
mm_123671.1	chr14	69249142	69249342	-	1	NA	NA	NA	35861	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.040000	0.427861	
mm_65521.1	chr7	25772074	25772274	-	1	NA	NA	NA	16559	NM_001190974	26362	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.005000	0.512438	
mm_147676.1	chr18	60648931	60649131	-	1	NA	NA	NA	-14379	NR_045401	328963	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.015000	0.562189	
mm_97258.1	chr11	75758804	75759004	+	1	NA	NA	NA	26017	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.000000	0.383085	67(ATGTTTTAAAGG,-,0.00)
mm_51398.1	chr6	78371734	78371934	+	1	NA	NA	NA	949	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.015000	0.492537	
mm_136128.1	chr16	85901255	85901455	-	1	NA	NA	NA	-230	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0.020000	0.492537	-35(GGCTTTAAATGA,-,0.00)
mm_136769.1	chr17	8988272	8988472	+	1	NA	NA	NA	39	NM_001347544	66931	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	0.030000	0.532338	
mm_151145.1	chr19	53131154	53131354	+	1	NA	NA	NA	-9189	NM_001164099	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.010000	0.467662	
mm_124331.1	chr14	103843594	103843794	-	1	NA	NA	NA	7	NM_007904	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.065000	0.626866	
mm_129194.1	chr15	76477149	76477349	-	1	NA	NA	NA	20	NM_013481	12181	Mm.4283	NM_013481	ENSMUSG00000022557	Bop1	AU020183|AW146150|D18861|Erb1p|Kiaa0124|mKIAA0124	block of proliferation 1	protein-coding	0.100000	0.681592	
mm_55068.1	chr6	49050982	49051182	-	1	NA	NA	NA	14564	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.015000	0.542289	
mm_127067.1	chr15	97373842	97374042	+	1	NA	NA	NA	-126655	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.045000	0.512438	
mm_100889.1	chr11	6065550	6065750	-	1	NA	NA	NA	98	NM_001174054	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	0.205000	0.820896	
mm_54456.1	chr6	34755750	34755950	-	1	NA	NA	NA	-24582	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.025000	0.552239	
mm_47146.1	chr5	120560309	120560509	-	1	NA	NA	NA	28204	NM_145853	252972	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.020000	0.547264	
mm_16451.1	chr2	180460937	180461137	+	1	NA	NA	NA	59	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.005000	0.527363	
mm_57848.1	chr6	129468865	129469065	-	1	NA	NA	NA	3814	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.010000	0.412935	
mm_87978.1	chr10	63683209	63683409	+	1	NA	NA	NA	-137746	NM_001164519	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.000000	0.383085	
mm_53920.1	chr6	4086726	4086926	-	1	NA	NA	NA	101	NM_009748	12068	Mm.286457	NM_009748	ENSMUSG00000032757	Bet1	AW555236|Bet-1	Bet1 golgi vesicular membrane trafficking protein	protein-coding	0.035000	0.582090	
mm_121622.1	chr14	8309602	8309802	-	1	NA	NA	NA	74	NM_183187	268709	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0.025000	0.582090	
mm_73664.1	chr8	111036807	111037007	+	1	NA	NA	NA	3065	NM_146217	234734	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	0.050000	0.437811	
mm_27535.1	chr3	57575747	57575947	-	1	NA	NA	NA	29	NM_133784	97064	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0.070000	0.626866	
mm_57261.1	chr6	123285408	123285608	-	1	NA	NA	NA	4363	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.005000	0.393035	
mm_40306.1	chr5	43818784	43818984	+	1	NA	NA	NA	-9	NM_009763	12182	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	0.010000	0.572139	
mm_73829.1	chr8	117460245	117460445	+	1	NA	NA	NA	1080	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.010000	0.517413	
mm_26641.1	chr3	153723809	153724009	+	1	NA	NA	NA	1224	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.015000	0.412935	
mm_68986.1	chr7	126590155	126590355	-	1	NA	NA	NA	-4438	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.015000	0.402985	
mm_26877.1	chr3	17761158	17761358	-	1	NA	NA	NA	-28663	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.005000	0.383085	
mm_159058.1	chr1	195092288	195092488	-	1	NA	NA	NA	-140	NM_010778	17221	Mm.12884	NM_010778	ENSMUSG00000016493	Cd46	Mcp	CD46 antigen, complement regulatory protein	protein-coding	0.045000	0.577114	
mm_19142.1	chr2	80447296	80447496	-	1	NA	NA	NA	0	NM_011356	20378	Mm.427436	NM_011356	ENSMUSG00000027004	Frzb	Frp|Sfrp3|frezzled|fritz|frzb-1	frizzled-related protein	protein-coding	0.070000	0.661692	
mm_74601.1	chr8	11678601	11678801	-	1	NA	NA	NA	49	NM_024271	76413	Mm.440041	NM_024271	ENSMUSG00000031509	1700016D06Rik	-	RIKEN cDNA 1700016D06 gene	protein-coding	0.025000	0.532338	
mm_166495.1	chr5	151406447	151406647	+	1	NA	NA	NA	43	NR_131166	100042166	Mm.443286	NR_131166	ENSMUSG00000097321	Gm3704	-	predicted gene 3704	ncRNA	0.015000	0.407960	
mm_38574.1	chr4	141816636	141816836	-	1	NA	NA	NA	9269	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.010000	0.398010	
mm_127993.1	chr15	12622308	12622508	-	1	NA	NA	NA	-29852	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.010000	0.527363	
mm_48503.1	chr5	142817309	142817509	-	1	NA	NA	NA	-22	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.150000	0.746269	
mm_47297.1	chr5	122253482	122253682	-	1	NA	NA	NA	10878	NR_104441	654470	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.015000	0.398010	
mm_44752.1	chr5	31290985	31291185	-	1	NA	NA	NA	29	NM_026298	67661	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	0.110000	0.606965	
mm_131277.1	chr16	11032020	11032220	+	1	NA	NA	NA	23222	NR_040518	100043147	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.005000	0.482587	
mm_96144.1	chr11	61022238	61022438	+	1	NA	NA	NA	-226	NM_001267593	16515	Mm.4970	NM_010603	ENSMUSG00000042529	Kcnj12	IRK-2|IRK2|Kir2.2|MB-IRK2	potassium inwardly-rectifying channel, subfamily J, member 12	protein-coding	0.130000	0.721393	
mm_135731.1	chr16	55831175	55831375	-	1	NA	NA	NA	7366	NM_030612	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.010000	0.467662	
mm_151695.1	chr19	4394545	4394745	-	1	NA	NA	NA	2432	NM_001001984	225876	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0.000000	0.318408	
mm_34097.1	chr4	138879292	138879492	+	1	NA	NA	NA	1450	NM_012044	26970	Mm.296007	NM_012044	ENSMUSG00000028751	Pla2g2e	-	phospholipase A2, group IIE	protein-coding	0.010000	0.567164	
mm_165674.1	chr3	89437452	89437652	+	1	NA	NA	NA	848	NM_146131	229534	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	0.005000	0.557214	
mm_161350.1	chr14	55071910	55072110	-	1	NA	NA	NA	-1081	NR_004444	432855	Mm.490799	NR_004444	ENSMUSG00000093452	Zfhx2os	Zfhx2as	zinc finger homeobox 2, opposite strand	ncRNA	0.060000	0.661692	
mm_46685.1	chr5	109751589	109751789	-	1	NA	NA	NA	82453	NR_027964	667213	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213|ENSMUSG00000072761	zinc finger protein pseudogene	pseudo	0.040000	0.517413	
mm_18821.1	chr2	74602041	74602241	-	1	NA	NA	NA	-23193	NM_027133	69605	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	0.005000	0.477612	
mm_158369.1	chrX	135009131	135009331	-	1	NA	NA	NA	-22	NM_175446	215693	Mm.336238	NM_175446	ENSMUSG00000052676	Zmat1	A230096A06|AW990744|B930008K04Rik	zinc finger, matrin type 1	protein-coding	0.085000	0.621891	
mm_90657.1	chr10	128804669	128804869	+	1	NA	NA	NA	-399	NM_178066	73827	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	0.025000	0.537313	
mm_35276.1	chr4	19922463	19922663	-	1	NA	NA	NA	3	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.015000	0.522388	
mm_172270.1	chr6	7983318	7983518	-	1	NA	NA	NA	138194	NM_052993	94192	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.065000	0.522388	
mm_169687.1	chr15	73809814	73810014	-	1	NA	NA	NA	29757	NM_001033365	268816	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding	0.055000	0.497512	
mm_107701.1	chr12	55465714	55465914	+	1	NA	NA	NA	26833	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.050000	0.651741	
mm_11702.1	chr2	36049380	36049580	+	1	NA	NA	NA	7	NM_029309	75495	Mm.276332	NM_029309	ENSMUSG00000026894	Morn5	1700010A17Rik	MORN repeat containing 5	protein-coding	0.055000	0.557214	
mm_134721.1	chr16	22898083	22898283	-	1	NA	NA	NA	-3797	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.005000	0.442786	
mm_57928.1	chr6	134566707	134566907	-	1	NA	NA	NA	106	NM_008514	16974	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	0.185000	0.791045	
mm_35911.1	chr4	49845758	49845958	-	1	NA	NA	NA	-89	NM_001276355	242443	Mm.440095	NM_001033351	ENSMUSG00000039579	Grin3a	6430537F04|A830097C19Rik|NMDAR-L|NR3A|mKIAA1973	glutamate receptor ionotropic, NMDA3A	protein-coding	0.070000	0.621891	
mm_133357.1	chr16	84698842	84699042	+	1	NA	NA	NA	-14081	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.005000	0.472637	
mm_129033.1	chr15	74983279	74983479	-	1	NA	NA	NA	51	NM_020498	57248	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	0.010000	0.472637	
mm_69028.1	chr7	126796565	126796765	-	1	NA	NA	NA	2513	NM_001177307	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.025000	0.542289	
mm_151829.1	chr19	5663553	5663753	-	1	NA	NA	NA	54	NM_001164482	20469	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0.085000	0.701493	
mm_52016.1	chr6	94500293	94500493	+	1	NA	NA	NA	79	NM_026255	67582	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	0.070000	0.616915	
mm_19453.1	chr2	92024214	92024414	-	1	NA	NA	NA	-144	NM_011957	26427	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.095000	0.781095	
mm_122881.1	chr14	54926695	54926895	-	1	NA	NA	NA	-7	NM_010112	13644	Mm.236438	NM_010112	ENSMUSG00000022203	Efs	-	embryonal Fyn-associated substrate	protein-coding	0.110000	0.741294	
mm_168326.1	chr11	116308738	116308938	+	1	NA	NA	NA	-2088	NM_001347636	53413	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	0.010000	0.412935	
mm_101156.1	chr11	16972164	16972364	-	1	NA	NA	NA	20854	NM_176982	319701	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.005000	0.452736	
mm_2293.1	chr1	91456709	91456909	+	1	NA	NA	NA	2519	NM_011066	18627	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.010000	0.557214	
mm_66026.1	chr7	30612739	30612939	-	1	NA	NA	NA	-105	NM_026815	109637	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	0.000000	0.517413	70(GCATATATAGGG,+,0.00),70(GCATATATAGGG,-,0.00)
mm_31949.1	chr4	86748467	86748667	+	1	NA	NA	NA	12	NM_184088	329877	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	0.065000	0.626866	
mm_132926.1	chr16	49840143	49840343	+	1	NA	NA	NA	-15411	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.015000	0.462687	17(CTCTCTAAAGAG,-,0.00)
mm_75690.1	chr8	68205952	68206152	-	1	NA	NA	NA	-70476	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.030000	0.482587	
mm_29901.1	chr3	131470849	131471049	-	1	NA	NA	NA	-93819	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.010000	0.572139	50(TACTTTATAAAG,-,0.00),52(CTTTATAAAGGG,+,0.00),52(CTTTATAAAGGG,-,0.00)
mm_112251.1	chr12	113662201	113662401	-	1	NA	NA	NA	118393	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.010000	0.487562	
mm_51351.1	chr6	72556052	72556252	+	1	NA	NA	NA	6505	NM_001271395	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.035000	0.582090	
mm_139789.1	chr17	65816958	65817158	+	1	NA	NA	NA	33703	NR_104465	70351	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0.005000	0.393035	
mm_158559.1	chrX	150414984	150415184	-	1	NA	NA	NA	25821	NM_001164686	382245	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding	0.000000	0.492537	
mm_151906.1	chr19	5799381	5799581	-	1	NA	NA	NA	3191	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.000000	0.318408	68(GTCTTTTAGAGG,-,0.00),69(TCTTTTAGAGGG,+,0.00)
mm_112717.1	chr13	19190241	19190441	+	1	NA	NA	NA	205472	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.502488	
mm_7589.1	chr1	125435403	125435603	-	1	NA	NA	NA	224	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.080000	0.731343	
mm_96845.1	chr11	70031280	70031480	+	1	NA	NA	NA	12775	NM_007864	13385	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs, large homolog 4 (Drosophila)	protein-coding	0.050000	0.606965	
mm_92720.1	chr10	80798777	80798977	-	1	NA	NA	NA	142	NM_013651	20222	Mm.358633	NM_013651	ENSMUSG00000020211	Sf3a2	66kDa|AW047242|PRP11|SFA66|Sap62	splicing factor 3a, subunit 2	protein-coding	0.130000	0.741294	
mm_75054.1	chr8	33385348	33385548	-	1	NA	NA	NA	79	NM_001122822	22427	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome homolog (human)	protein-coding	0.060000	0.606965	
mm_120279.1	chr14	63130807	63131007	+	1	NA	NA	NA	8445	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.015000	0.502488	
mm_156028.1	chrX	107255609	107255809	+	1	NA	NA	NA	-169	NM_001177781	213439	Mm.383562	NM_001033251	ENSMUSG00000073008	Gpr174	Gm376|Lypsr3	G protein-coupled receptor 174	protein-coding	0.000000	0.412935	-36(ATCTATAAAAGG,-,0.00)
mm_116058.1	chr13	27509522	27509722	-	1	NA	NA	NA	3591	NM_023741	74188	Mm.46090	NM_023741	ENSMUSG00000021346	Prl8a8	1600032B14Rik|Ghd14|PLP-Cgamma|Prlpc3	prolactin family 8, subfamily a, member 81	protein-coding	0.010000	0.353234	
mm_75419.1	chr8	46764910	46765110	-	1	NA	NA	NA	25265	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.015000	0.472637	-22(GGGCTTTAAAGC,-,0.00)
mm_5490.1	chr1	36939399	36939599	-	1	NA	NA	NA	28	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.140000	0.726368	
mm_48535.1	chr5	142904482	142904682	-	1	NA	NA	NA	2172	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.050000	0.587065	
mm_125360.1	chr15	39434229	39434429	+	1	NA	NA	NA	-225182	NM_001256384	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.015000	0.422886	
mm_136877.1	chr17	13007839	13008039	+	1	NA	NA	NA	100	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.140000	0.701493	
mm_116129.1	chr13	28953176	28953376	-	1	NA	NA	NA	406	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.090000	0.616915	
mm_152326.1	chr19	9945798	9945998	-	1	NA	NA	NA	-34702	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.020000	0.472637	
mm_63533.1	chr7	127971009	127971209	+	1	NA	NA	NA	3630	NM_139149	233908	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0.030000	0.447761	
mm_55403.1	chr6	60828795	60828995	-	1	NA	NA	NA	109	NM_001042451	20617	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alphaSYN	synuclein, alpha	protein-coding	0.070000	0.706468	
mm_170304.1	chr18	34909833	34910033	-	1	NA	NA	NA	22070	NM_144866	225363	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.025000	0.422886	-43(TCTTTAATAGTT,+,0.00)
mm_39178.1	chr4	155784816	155785016	-	1	NA	NA	NA	958	NM_001033394	320587	Mm.384382	NM_001033394	ENSMUSG00000073680	Tmem88b	A230069A22Rik	transmembrane protein 88B	protein-coding	0.015000	0.562189	
mm_136764.1	chr17	8801678	8801878	+	1	NA	NA	NA	33	NM_011866	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.120000	0.746269	
mm_133434.1	chr16	87698832	87699032	+	1	NA	NA	NA	-22	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.110000	0.756219	
mm_64260.1	chr7	141745428	141745628	+	1	NA	NA	NA	-43483	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.010000	0.512438	
mm_37600.1	chr4	126751993	126752193	-	1	NA	NA	NA	1336	NM_011986	26562	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	0.030000	0.631841	
mm_160876.1	chr11	68973740	68973940	-	1	NA	NA	NA	15	NM_021329	57785	Mm.143774	NM_021329	ENSMUSG00000032892	Rangrf	2400006H24Rik|Mog1|Rangnrf	RAN guanine nucleotide release factor	protein-coding	0.065000	0.577114	
mm_165597.1	chr3	42896612	42896812	+	1	NA	NA	NA	1154094	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.005000	0.263682	86(GCCTCTTAAAAC,-,0.00)
mm_124341.1	chr14	103844227	103844427	-	1	NA	NA	NA	149	NM_001136061	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.045000	0.547264	
mm_90095.1	chr10	116962365	116962565	+	1	NA	NA	NA	-2275	NR_027847	103175	Mm.27138	NR_027846	ENSMUSG00000031294	D630029K05Rik	AI314111|AI875589	RIKEN cDNA D630029K05 gene	ncRNA	0.035000	0.487562	
mm_44499.1	chr5	23712770	23712970	-	1	NA	NA	NA	-203	NR_015554	433855	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	0.035000	0.587065	
mm_94579.1	chr11	11690202	11690402	+	1	NA	NA	NA	125	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.015000	0.567164	
mm_118649.1	chr14	21657451	21657651	+	1	NA	NA	NA	57025	NM_001013826	435391	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0.025000	0.522388	
mm_59239.1	chr7	24778316	24778516	+	1	NA	NA	NA	1212	NM_007675	26366	Mm.30300	NM_007675	ENSMUSG00000054169	Ceacam10	Bgp3|Cea10	carcinoembryonic antigen-related cell adhesion molecule 10	protein-coding	0.025000	0.407960	
mm_50718.1	chr6	52217540	52217740	+	1	NA	NA	NA	933	NM_010455	15404	Mm.294826	NM_010455	ENSMUSG00000038236	Hoxa7	AV118143|Hox-1.1|M6	homeobox A7	protein-coding	0.085000	0.716418	
mm_46898.1	chr5	114091239	114091439	-	1	NA	NA	NA	41	NM_026805	68666	Mm.63584	NM_026805	ENSMUSG00000042078	Svop	1110030H18Rik|AI415691|msvop	SV2 related protein	protein-coding	0.080000	0.736318	
mm_139337.1	chr17	49454742	49454942	+	1	NA	NA	NA	26478	NM_020042	56738	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.015000	0.517413	
mm_8618.1	chr1	156037250	156037450	-	1	NA	NA	NA	-870	NM_001160018	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.010000	0.487562	
mm_4354.1	chr1	171917355	171917555	+	1	NA	NA	NA	-7	NM_001347187	30925	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	0.010000	0.517413	
mm_41240.1	chr5	88765080	88765280	+	1	NA	NA	NA	167	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.115000	0.701493	
mm_169952.1	chr16	83579306	83579506	+	1	NA	NA	NA	-791737	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0.000000	0.522388	-28(CCTTTTATAAGC,+,0.00),-28(CCTTTTATAAGC,-,0.00)
mm_126208.1	chr15	78889727	78889927	+	1	NA	NA	NA	-2013	NR_105920	102466210		NR_105920	ENSMUSG00000099267	Mir6955	Gm27769|mmu-mir-6955	microRNA 6955	ncRNA	0.030000	0.666667	
mm_41321.1	chr5	90472368	90472568	+	1	NA	NA	NA	11598	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.457711	
mm_144893.1	chr18	36960184	36960384	+	1	NA	NA	NA	-156	NM_009959	12941	Mm.308500	NM_009959	ENSMUSG00000103092	Pcdha5	Cnr6|Crnr6	protocadherin alpha 5	protein-coding	0.015000	0.343284	
mm_2359.1	chr1	92973020	92973220	+	1	NA	NA	NA	1	NM_001104529	64095	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0.005000	0.572139	
mm_57082.1	chr6	122581958	122582158	-	1	NA	NA	NA	20386	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.015000	0.402985	
mm_158332.1	chrX	133961674	133961874	-	1	NA	NA	NA	20038	NM_001290718	27359	Mm.38674	NM_013757	ENSMUSG00000031255	Sytl4	Gph|Slp4	synaptotagmin-like 4	protein-coding	0.025000	0.527363	
mm_6064.1	chr1	60566994	60567194	-	1	NA	NA	NA	-329	NM_001045513	77300	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0.120000	0.701493	
mm_76398.1	chr8	84844578	84844778	-	1	NA	NA	NA	2253	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.020000	0.512438	
mm_71365.1	chr8	45696316	45696516	+	1	NA	NA	NA	34423	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.000000	0.358209	1(CCATATAGACAC,+,0.00)
mm_171301.1	chr3	93676211	93676411	-	1	NA	NA	NA	-28	NM_148949	207213	Mm.425165	NM_148949	ENSMUSG00000094084	Tdpoz1	2cpoz56|Mapp2|Spopl1	TD and POZ domain containing 1	protein-coding	0.010000	0.467662	-35(GCCTATATAAGC,-,0.00)
mm_75138.1	chr8	35250609	35250809	-	1	NA	NA	NA	-125032	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.015000	0.502488	
mm_158968.1	chr1	97894356	97894556	-	1	NA	NA	NA	124284	NM_026250	252876	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding	0.010000	0.477612	
mm_148418.1	chr19	3935998	3936198	+	1	NA	NA	NA	912	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.045000	0.616915	
mm_50704.1	chr6	52103878	52104078	+	1	NA	NA	NA	1029	NR_110440	102635415	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|OTTMUSG00000018881|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA	0.035000	0.532338	
mm_151026.1	chr19	46985425	46985625	+	1	NA	NA	NA	-15958	NM_001164365	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.000000	0.467662	
mm_16538.1	chr2	181601281	181601481	+	1	NA	NA	NA	62	NM_133701	68879	Mm.292001	NM_133701	ENSMUSG00000002455	Prpf6	1190003A07Rik|2610031L17Rik|ANT-1|U5-102K	pre-mRNA splicing factor 6	protein-coding	0.070000	0.557214	
mm_132213.1	chr16	32621472	32621672	+	1	NA	NA	NA	12676	NM_011638	22042	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0.010000	0.422886	78(CTTTTAATACAG,+,0.00)
mm_48902.1	chr6	3344509	3344709	+	1	NA	NA	NA	54962	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.000000	0.378109	-17(CCTCATAAACAC,+,0.00)
mm_34621.1	chr4	150566375	150566575	+	1	NA	NA	NA	85699	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.005000	0.442786	
mm_146087.1	chr18	73556829	73557029	+	1	NA	NA	NA	-15776	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.020000	0.487562	
mm_92920.1	chr10	84440442	84440642	-	1	NA	NA	NA	-71	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.140000	0.751244	
mm_101331.1	chr11	23069125	23069325	-	1	NA	NA	NA	55838	NM_028672	73873	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0.035000	0.457711	-35(GCCTATAAAAGC,-,0.00)
mm_153762.1	chr19	45591698	45591898	-	1	NA	NA	NA	31183	NM_172639	226162	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	5330431N19Rik|Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.010000	0.512438	
mm_3752.1	chr1	156035682	156035882	+	1	NA	NA	NA	55	NM_001160180	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.140000	0.726368	
mm_11031.1	chr2	26913293	26913493	+	1	NA	NA	NA	2586	NM_013721	27176	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	0.030000	0.402985	
mm_127487.1	chr15	101293128	101293328	+	1	NA	NA	NA	16	NR_033803	77717	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.030000	0.636816	
mm_140404.1	chr17	87640354	87640554	+	1	NA	NA	NA	4475	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.100000	0.611940	
mm_148604.1	chr19	5308162	5308362	+	1	NA	NA	NA	9931	NM_001024717	545276	Mm.447174	NM_001024717	ENSMUSG00000047658	Gal3st3	-	galactose-3-O-sulfotransferase 3	protein-coding	0.000000	0.517413	
mm_74534.1	chr8	9727084	9727284	-	1	NA	NA	NA	43839	NM_173446	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding	0.005000	0.492537	
mm_63261.1	chr7	126695293	126695493	+	1	NA	NA	NA	390	NM_029420	75764	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	0.090000	0.606965	
mm_141215.1	chr17	27167653	27167853	-	1	NA	NA	NA	11	NM_173027	271424	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	0.015000	0.611940	
mm_107540.1	chr12	40575517	40575717	+	1	NA	NA	NA	129564	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.000000	0.407960	
mm_10363.1	chr2	11705343	11705543	+	1	NA	NA	NA	150	NM_001271497	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.020000	0.537313	
mm_107826.1	chr12	69168748	69168948	+	1	NA	NA	NA	34	NM_001081406	69706	Mm.28847	NM_027178	ENSMUSG00000034883	Lrr1	2410005L11Rik|AU021780|LRR-1|Ppil5	leucine rich repeat protein 1	protein-coding	0.075000	0.636816	
mm_148994.1	chr19	8618095	8618295	+	1	NA	NA	NA	199	NM_008766	18399	Mm.30090	NM_008766	ENSMUSG00000024650	Slc22a6	NKT|Oat1|Orctl1|mOat1	solute carrier family 22 (organic anion transporter), member 6	protein-coding	0.015000	0.631841	
mm_51200.1	chr6	71284359	71284559	+	1	NA	NA	NA	12440	NM_145568	57896	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	0.015000	0.432836	-97(GCTCATATAGTG,+,0.00)
mm_171285.1	chr3	89998536	89998736	-	1	NA	NA	NA	80	NM_011826	23897	Mm.256035	NM_011826	ENSMUSG00000027944	Hax1	HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s	HCLS1 associated X-1	protein-coding	0.080000	0.552239	
mm_30448.1	chr3	153852301	153852501	-	1	NA	NA	NA	23	NR_040373	72317	Mm.440147	NR_040373	ENSMUSG00000086438	Asb17os	2510003D18Rik	ankyrin repeat and SOCS box-containing 17, opposite strand	ncRNA	0.030000	0.517413	
mm_86268.1	chr9	121706278	121706478	-	1	NA	NA	NA	-1349	NM_178677	215474	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.020000	0.492537	
mm_43628.1	chr5	138180048	138180248	+	1	NA	NA	NA	7038	NM_009315	21343	Mm.248517	NM_009315	ENSMUSG00000036980	Taf6	80kDa|AW549759|TAF(II)80|TAFII70|Taf2e|p80	TATA-box binding protein associated factor 6	protein-coding	0.010000	0.407960	
mm_31848.1	chr4	74265092	74265292	+	1	NA	NA	NA	13313	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.000000	0.278607	
mm_173008.1	chrM	136	336	+	1	NA	NA	NA	NA	NA									0.030000	0.402985	
mm_65924.1	chr7	30242779	30242979	-	1	NA	NA	NA	-6114	NM_001289817	381867	Mm.483986	NM_001289817	ENSMUSG00000100512	Ovol3	Gm1903|movo3	ovo like zinc finger 3	protein-coding	0.035000	0.597015	
mm_129304.1	chr15	77376815	77377015	-	1	NA	NA	NA	22195	NM_029419	75761	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	0.010000	0.557214	
mm_69916.1	chr7	141704296	141704496	-	1	NA	NA	NA	14056	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.010000	0.412935	
mm_172427.1	chr7	28338619	28338819	-	1	NA	NA	NA	0	NM_013676	20924	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0.110000	0.691542	
mm_113967.1	chr13	51645221	51645421	+	1	NA	NA	NA	89	NM_025415	66197	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0.115000	0.656716	
mm_14151.1	chr2	126561581	126561781	+	1	NA	NA	NA	8657	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0.055000	0.502488	
mm_77185.1	chr8	111743778	111743978	-	1	NA	NA	NA	-29	NM_009954	12927	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0.145000	0.756219	
mm_45126.1	chr5	48331325	48331525	-	1	NA	NA	NA	-40967	NM_025755	66768	Mm.29409	NM_025755	ENSMUSG00000029089	Pacrgl	4933428G09Rik	PARK2 co-regulated-like	protein-coding	0.000000	0.407960	
mm_141690.1	chr17	33955572	33955772	-	1	NA	NA	NA	-31	NM_011296	20084	Mm.298745	NM_011296	ENSMUSG00000008668	Rps18	H-2Ke3|H2-Ke3|Ke-3|ke3	ribosomal protein S18	protein-coding	0.095000	0.621891	-24(ATCTATATAAGA,-,0.00)
mm_141727.1	chr17	34116179	34116379	-	1	NA	NA	NA	3621	NR_037970	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.000000	0.293532	86(GCTTATATAGTA,+,0.00)
mm_36022.1	chr4	56990264	56990464	-	1	NA	NA	NA	27	NM_001142965	230235	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	0.165000	0.815920	
mm_130817.1	chr15	101786422	101786622	-	1	NA	NA	NA	-64	NM_213728	105866	Mm.298210	NM_213728	ENSMUSG00000056605	Krt72	AI507495|K6irs2|Krt2-35|Krt72-ps	keratin 72	protein-coding	0.035000	0.611940	-31(GACTATTTAAGG,-,0.00),-29(CTATTTAAGGGG,+,0.00)
mm_37130.1	chr4	116708166	116708366	-	1	NA	NA	NA	119	NM_025962	67096	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0.040000	0.532338	
mm_130133.1	chr15	90829718	90829918	-	1	NA	NA	NA	68658	NR_033583	20738	Mm.431547	NR_033583		Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.010000	0.393035	57(GTGTTTAAAAGG,-,0.00)
mm_59883.1	chr7	30292057	30292257	+	1	NA	NA	NA	404	NM_001081114	76686	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	0.035000	0.651741	
mm_171940.1	chr5	6741809	6742009	-	1	NA	NA	NA	-562255	NM_027603	70920	Mm.158494	NM_027603	ENSMUSG00000040514	4921511H03Rik	-	RIKEN cDNA 4921511H03 gene	protein-coding	0.005000	0.492537	
mm_132214.1	chr16	32628382	32628582	+	1	NA	NA	NA	-16161	NM_001110147	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.020000	0.393035	-61(TACTTTAAAAGG,-,0.00)
mm_142845.1	chr17	51796384	51796584	-	1	NA	NA	NA	15570	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.010000	0.402985	
mm_165180.1	chr2	29194516	29194716	-	1	NA	NA	NA	53483	NM_001305805	171171	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	0.050000	0.497512	
mm_153752.1	chr19	45075084	45075284	-	1	NA	NA	NA	-955	NM_178929	107250	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.080000	0.631841	-54(GCTTTTAGGCAA,+,0.00),-30(GCTTATATAGGC,+,0.00)
mm_12255.1	chr2	68913471	68913671	+	1	NA	NA	NA	52130	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.015000	0.492537	
mm_82311.1	chr9	7872826	7873026	-	1	NA	NA	NA	244	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.045000	0.656716	
mm_76315.1	chr8	84662949	84663149	-	1	NA	NA	NA	-197	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.045000	0.517413	
mm_89520.1	chr10	94356699	94356899	+	1	NA	NA	NA	-58096	NR_033209	215472	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	0.020000	0.492537	
mm_120622.1	chr14	70457332	70457532	+	1	NA	NA	NA	-85	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.030000	0.572139	
mm_149239.1	chr19	10186055	10186255	+	1	NA	NA	NA	3267	NM_146094	76267	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0.005000	0.517413	
mm_9772.1	chr1	181001856	181002056	-	1	NA	NA	NA	15613	NM_010145	13849	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.005000	0.572139	
mm_45897.1	chr5	88675479	88675679	-	1	NA	NA	NA	1	NM_001098476	231413	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.085000	0.661692	
mm_32358.1	chr4	105157399	105157599	+	1	NA	NA	NA	152	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.095000	0.661692	
mm_14763.1	chr2	145167843	145168043	+	1	NA	NA	NA	-74668	NM_053195	94249	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.175000	0.800995	
mm_105680.1	chr11	107716339	107716539	-	1	NA	NA	NA	37	NM_007582	12299	Mm.57093	NM_007582	ENSMUSG00000020722	Cacng1	-	calcium channel, voltage-dependent, gamma subunit 1	protein-coding	0.025000	0.597015	
mm_120384.1	chr14	64589780	64589980	+	1	NA	NA	NA	-777	NR_029813	387233		NR_029813	ENSMUSG00000065597	Mir124a-1	Mirn124a|Mirn124a-1	microRNA 124a-1	ncRNA	0.050000	0.552239	
mm_89898.1	chr10	110934194	110934394	+	1	NA	NA	NA	14118	NM_007792	13008	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	0.015000	0.368159	
mm_148976.1	chr19	7559554	7559754	+	1	NA	NA	NA	2195	NM_139269	225845	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.020000	0.497512	
mm_6771.1	chr1	84131197	84131397	-	1	NA	NA	NA	87664	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.015000	0.462687	
mm_129411.1	chr15	78305624	78305824	-	1	NA	NA	NA	-3	NM_001287389	12984	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	0.010000	0.492537	
mm_167907.1	chrX	83589524	83589724	+	1	NA	NA	NA	-101700	NM_021898	100502723	Mm.383210	NM_021898	ENSMUSG00000035522	Tsga8	Halap-X|Halapx	testis specific gene A8	protein-coding	0.005000	0.442786	
mm_76051.1	chr8	77689066	77689266	-	1	NA	NA	NA	35286	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	0.020000	0.522388	-93(GGGTATATGAGC,-,0.00)
mm_60654.1	chr7	44895989	44896189	+	1	NA	NA	NA	10	NM_027376	70300	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0.055000	0.547264	
mm_121018.1	chr14	79540099	79540299	+	1	NA	NA	NA	24525	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.000000	0.258706	
mm_120553.1	chr14	67812101	67812301	+	1	NA	NA	NA	47544	NR_105857	102465310		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	0.040000	0.512438	
mm_120595.1	chr14	70077079	70077279	+	1	NA	NA	NA	-266	NM_018781	13655	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.050000	0.656716	
mm_46966.1	chr5	115155089	115155289	-	1	NA	NA	NA	2987	NM_175403	109154	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0.010000	0.497512	
mm_162768.1	chr10	66200390	66200590	-	1	NA	NA	NA	55194	NR_131070	77198	Mm.107617	NR_131070		4930407I19Rik	-	RIKEN cDNA 4930407I19 gene	ncRNA	0.010000	0.378109	
mm_48226.1	chr5	137645631	137645831	-	1	NA	NA	NA	-17	NM_010571	16369	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	0.020000	0.572139	
mm_23202.1	chr3	41497154	41497354	+	1	NA	NA	NA	-4055	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.020000	0.532338	-30(CCATTTAGGGAG,+,0.00)
mm_134438.1	chr16	18245132	18245332	-	1	NA	NA	NA	3462	NM_011239	19385	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	0.015000	0.507463	
mm_169869.1	chr16	35871299	35871499	-	1	NA	NA	NA	-17	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.055000	0.537313	
mm_129937.1	chr15	84855926	84856126	-	1	NA	NA	NA	103	NM_001081166	271305	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.155000	0.771144	
mm_149615.1	chr19	16387149	16387349	+	1	NA	NA	NA	-48418	NM_008137	14675	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.010000	0.318408	
mm_136272.1	chr16	91056351	91056551	-	1	NA	NA	NA	-12072	NM_026110	67367	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.015000	0.492537	
mm_162676.1	chr10	9833536	9833736	+	1	NA	NA	NA	67404	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0.010000	0.492537	
mm_111083.1	chr12	80260220	80260420	-	1	NA	NA	NA	51	NM_134156	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.125000	0.751244	
mm_48238.1	chr5	137741047	137741247	-	1	NA	NA	NA	21	NM_001347505	243300	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	0.075000	0.751244	
mm_151836.1	chr19	5720586	5720786	-	1	NA	NA	NA	5631	NM_001114595	114601	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0.015000	0.651741	
mm_148850.1	chr19	6385945	6386145	+	1	NA	NA	NA	1637	NM_011224	19309	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0.020000	0.567164	
mm_141777.1	chr17	34291597	34291797	-	1	NA	NA	NA	-3926	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.025000	0.457711	
mm_79858.1	chr9	65021096	65021296	+	1	NA	NA	NA	521	NM_021345	57874	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	0.060000	0.646766	
mm_146941.1	chr18	32399886	32400086	-	1	NA	NA	NA	-21702	NR_045403	402767	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.015000	0.537313	
mm_81488.1	chr9	110003346	110003546	+	1	NA	NA	NA	-48575	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.010000	0.378109	
mm_67499.1	chr7	80778370	80778570	-	1	NA	NA	NA	24861	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.015000	0.472637	
mm_33133.1	chr4	124986374	124986574	+	1	NA	NA	NA	44	NM_138683	192199	Mm.42202	NM_138683	ENSMUSG00000028871	Rspo1	R-spondin|Rspondin	R-spondin 1	protein-coding	0.140000	0.781095	
mm_20859.1	chr2	148436947	148437147	-	1	NA	NA	NA	6488	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.010000	0.457711	
mm_106794.1	chr12	4817567	4817767	+	1	NA	NA	NA	59	NM_025323	66055	Mm.102627	NM_025323	ENSMUSG00000037361	Sf3b6	0610009D07Rik|6030419K15Rik|AV001342|Sf3b14	splicing factor 3B, subunit 6	protein-coding	0.075000	0.497512	
mm_151505.1	chr19	58731923	58732123	+	1	NA	NA	NA	3136	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.020000	0.537313	
mm_9423.1	chr1	172376203	172376403	-	1	NA	NA	NA	-228	NM_026234	67556	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	0.055000	0.567164	
mm_58775.1	chr7	16048314	16048514	+	1	NA	NA	NA	-23431	NM_001347559	666528	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.060000	0.616915	
mm_131656.1	chr16	20540534	20540734	+	1	NA	NA	NA	5154	NM_009679	11773	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.010000	0.527363	
mm_171214.1	chr3	58987052	58987252	+	1	NA	NA	NA	-19826	NM_177855	329650	Mm.240059	NM_177855	ENSMUSG00000056476	Med12l	A130035F20|A630079M02|AU044581|TRALPUSH	mediator complex subunit 12-like	protein-coding	0.025000	0.577114	
mm_17725.1	chr2	32423950	32424150	-	1	NA	NA	NA	16	NM_001290558	227731	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.025000	0.512438	
mm_136821.1	chr17	12418939	12419139	+	1	NA	NA	NA	40430	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.030000	0.497512	
mm_163077.1	chr11	68854065	68854265	-	1	NA	NA	NA	-1034	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.010000	0.462687	
mm_101476.1	chr11	30785565	30785765	-	1	NA	NA	NA	13890	NM_134013	103554	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	0.005000	0.507463	-38(CACTATAAAAGG,-,0.00)
mm_151606.1	chr19	3686435	3686635	-	1	NA	NA	NA	29	NM_008513	16973	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0.195000	0.810945	
mm_5288.1	chr1	20817212	20817412	-	1	NA	NA	NA	2901	NM_008563	17215	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|p1.m	minichromosome maintenance complex component 3	protein-coding	0.030000	0.537313	
mm_167178.1	chr7	140218313	140218513	+	1	NA	NA	NA	146	NM_172909	244233	Mm.19283	NM_172909	ENSMUSG00000025461	Cd163l1	B430307C05|E430002D04Rik|Scart1	CD163 molecule-like 1	protein-coding	0.020000	0.517413	
mm_52055.1	chr6	97232469	97232669	+	1	NA	NA	NA	20211	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.035000	0.512438	86(GTTTTTAAACAG,+,0.00)
mm_47707.1	chr5	129887361	129887561	-	1	NA	NA	NA	9	NM_024166	14004	Mm.30133	NM_024166	ENSMUSG00000070493	Chchd2	AL033347|Etohi6	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding	0.040000	0.492537	
mm_132240.1	chr16	32750790	32750990	+	1	NA	NA	NA	15004	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.000000	0.432836	
mm_86935.1	chr10	24223470	24223670	+	1	NA	NA	NA	53	NM_021509	59012	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	0.095000	0.761194	
mm_72031.1	chr8	70763629	70763829	+	1	NA	NA	NA	-2808	NM_183170	234384	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0.015000	0.552239	
mm_40030.1	chr5	33629823	33630023	+	1	NA	NA	NA	-288	NM_178390	74504	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	0.095000	0.636816	
mm_61695.1	chr7	81113166	81113366	+	1	NA	NA	NA	-1533	NM_001004184	434203	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	0.015000	0.517413	
mm_135019.1	chr16	32487717	32487917	-	1	NA	NA	NA	62	NM_145932	106407	Mm.476915	NM_145932	ENSMUSG00000035699	Slc51a	AV001382|AW261577|D630035O19Rik|OSTalpha|Osta	solute carrier family 51, alpha subunit	protein-coding	0.015000	0.527363	
mm_66807.1	chr7	47252769	47252969	-	1	NA	NA	NA	-21	NM_001288801	668725	Mm.436563	NM_001177566	ENSMUSG00000074111	Mrgpra9	EG668725|MrgA9	MAS-related GPR, member A9	protein-coding	0.005000	0.422886	
mm_72556.1	chr8	84066811	84067011	+	1	NA	NA	NA	75	NM_009055	19724	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	0.095000	0.696517	
mm_104131.1	chr11	86807535	86807735	-	1	NA	NA	NA	25	NM_026191	67487	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.120000	0.681592	
mm_160488.1	chr8	126139079	126139279	+	1	NA	NA	NA	144077	NM_008430	16525	Mm.10800	NM_008430	ENSMUSG00000033998	Kcnk1	AI788889|TWIK-1	potassium channel, subfamily K, member 1	protein-coding	0.080000	0.706468	
mm_16328.1	chr2	174327467	174327667	+	1	NA	NA	NA	-201	NM_001310083	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.085000	0.636816	
mm_29946.1	chr3	132950074	132950274	-	1	NA	NA	NA	117	NM_001287102	114249	Mm.279310	NM_033525	ENSMUSG00000040998	Npnt	1110009H02Rik|AA682063|AI314031|Nctn|POEM	nephronectin	protein-coding	0.155000	0.815920	
mm_71398.1	chr8	46163728	46163928	+	1	NA	NA	NA	-5728	NM_025747	66756	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430|mKIAA1430	cilia and flagella associated protein 97	protein-coding	0.125000	0.741294	
mm_16710.1	chr2	7085541	7085741	-	1	NA	NA	NA	-4339	NM_001160292	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.000000	0.308458	
mm_80302.1	chr9	73192379	73192579	+	1	NA	NA	NA	79010	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0.020000	0.577114	
mm_19719.1	chr2	104410552	104410752	-	1	NA	NA	NA	-318	NM_001033347	241589	Mm.358909	NM_001033347	ENSMUSG00000068373	D430041D05Rik	9630056G07Rik|G2	RIKEN cDNA D430041D05 gene	protein-coding	0.135000	0.711443	
mm_99247.1	chr11	101082561	101082761	+	1	NA	NA	NA	96	NM_001305982	71743	Mm.182271	NM_027896	ENSMUSG00000001755	Coasy	1300003G02Rik|Dpck|Ppat|Ukr1	Coenzyme A synthase	protein-coding	0.065000	0.616915	
mm_63437.1	chr7	127479132	127479332	+	1	NA	NA	NA	-5989	NM_010183	14123	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.150000	0.786070	
mm_35613.1	chr4	43405936	43406136	-	1	NA	NA	NA	-466	NM_199057	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.015000	0.507463	
mm_118776.1	chr14	23149758	23149958	+	1	NA	NA	NA	-55287	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA	0.000000	0.477612	
mm_79462.1	chr9	56418726	56418926	+	1	NA	NA	NA	-20	NM_025812	66867	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0.030000	0.492537	
mm_106308.1	chr11	118301500	118301700	-	1	NA	NA	NA	-11356	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.030000	0.492537	
mm_52161.1	chr6	98019945	98020145	+	1	NA	NA	NA	28262	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.353234	-6(TTTTTTAAAGTG,+,0.00)
mm_34372.1	chr4	144893321	144893521	+	1	NA	NA	NA	284	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.040000	0.492537	
mm_129669.1	chr15	81360678	81360878	-	1	NA	NA	NA	-13	NM_011399	20524	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	0.065000	0.621891	
mm_160478.1	chr8	121604952	121605152	-	1	NA	NA	NA	14584	NM_026160	67443	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0.055000	0.646766	
mm_101877.1	chr11	48901928	48902128	-	1	NA	NA	NA	124	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.005000	0.452736	
mm_62121.1	chr7	96697385	96697585	+	1	NA	NA	NA	104064	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA	0.015000	0.477612	
mm_50744.1	chr6	52733092	52733292	+	1	NA	NA	NA	19463	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.000000	0.253731	
mm_90541.1	chr10	128091080	128091280	+	1	NA	NA	NA	-1603	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.025000	0.542289	
mm_154558.1	chrM	16088	16288	-	1	NA	NA	NA	NA	NA									0.010000	0.338308	
mm_129017.1	chr15	74930375	74930575	-	1	NA	NA	NA	-24576	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.015000	0.512438	
mm_9910.1	chr1	188320732	188320932	-	1	NA	NA	NA	57994	NM_021408	22283	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Usherin|Ushrn	Usher syndrome 2A	protein-coding	0.020000	0.442786	
mm_19397.1	chr2	91630587	91630787	-	1	NA	NA	NA	5770	NM_010168	14061	Mm.89048	NM_010168	ENSMUSG00000027249	F2	Cf-2|Cf2|FII	coagulation factor II	protein-coding	0.030000	0.572139	
mm_61126.1	chr7	55842151	55842351	+	1	NA	NA	NA	180	NM_001164661	20430	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.090000	0.696517	
mm_121116.1	chr14	101840245	101840445	+	1	NA	NA	NA	-278	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.030000	0.502488	
mm_12408.1	chr2	70508736	70508936	+	1	NA	NA	NA	17	NM_025744	66748	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	0.035000	0.552239	-41(ACCTCTAAAGGG,-,0.00),-40(CCTCTAAAGGGC,+,0.00)
mm_59939.1	chr7	30424282	30424482	+	1	NA	NA	NA	1078	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.010000	0.557214	
mm_47215.1	chr5	121009454	121009654	-	1	NA	NA	NA	-16	NM_011286	19894	Mm.181166	NM_011286	ENSMUSG00000029608	Rph3a	2900002P20Rik|AU022689|AW108370	rabphilin 3A	protein-coding	0.070000	0.681592	
mm_59843.1	chr7	29768439	29768639	+	1	NA	NA	NA	-13	NM_023750	74352	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	0.040000	0.512438	3(CACTATAAATGC,-,0.00)
mm_170151.1	chr17	45570645	45570845	-	1	NA	NA	NA	2516	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.010000	0.462687	
mm_59491.1	chr7	27507750	27507950	+	1	NA	NA	NA	8526	NM_019412	19153	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	0.080000	0.651741	
mm_33728.1	chr4	134095076	134095276	+	1	NA	NA	NA	-103	NM_013706	23833	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	0.015000	0.557214	
mm_36504.1	chr4	83468542	83468742	-	1	NA	NA	NA	17806	NM_001290527	101739	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	0.015000	0.437811	74(GCTTAAATACCT,+,0.00)
mm_91696.1	chr10	44003517	44003717	-	1	NA	NA	NA	1229	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.120000	0.716418	
mm_62369.1	chr7	100607793	100607993	+	1	NA	NA	NA	103	NR_003559	52443	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e	mitochondrial ribosomal protein L48	protein-coding	0.145000	0.731343	
mm_145052.1	chr18	40256937	40257137	+	1	NA	NA	NA	75	NR_045177	73001	Mm.428647	NR_045177	ENSMUSG00000071860	2900055J20Rik	-	RIKEN cDNA 2900055J20 gene	ncRNA	0.040000	0.582090	
mm_85640.1	chr9	107655062	107655262	-	1	NA	NA	NA	12237	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.040000	0.597015	
mm_145657.1	chr18	61130525	61130725	+	1	NA	NA	NA	13157	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.020000	0.582090	
mm_107131.1	chr12	21214776	21214976	+	1	NA	NA	NA	71361	NM_008403	16413	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	0.010000	0.467662	
mm_84779.1	chr9	75683979	75684179	-	1	NA	NA	NA	-23	NM_009130	20255	Mm.2386	NM_009130	ENSMUSG00000032181	Scg3	1B1075|AI385542|Chgd|SgIII	secretogranin III	protein-coding	0.085000	0.631841	
mm_89135.1	chr10	85386754	85386954	+	1	NA	NA	NA	40	NM_028709	74007	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.100000	0.681592	
mm_3734.1	chr1	155104867	155105067	+	1	NA	NA	NA	-5331	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.015000	0.373134	
mm_31130.1	chr4	43135716	43135916	+	1	NA	NA	NA	76863	NM_001310758	22249	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	0.000000	0.472637	
mm_17285.1	chr2	26140269	26140469	-	1	NA	NA	NA	137	NM_001256521	109299	Mm.389259	NM_001256521		C330006A16Rik	AI551216	RIKEN cDNA C330006A16 gene	protein-coding	0.145000	0.766169	
mm_151427.1	chr19	56874339	56874539	+	1	NA	NA	NA	23	NM_172840	240675	Mm.129534	NM_172840	ENSMUSG00000025082	Vwa2	Amaco	von Willebrand factor A domain containing 2	protein-coding	0.105000	0.721393	
mm_112567.1	chr13	13559001	13559201	+	1	NA	NA	NA	-31308	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.010000	0.477612	
mm_64430.1	chr7	142577736	142577936	+	1	NA	NA	NA	310	NR_130974	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.040000	0.597015	
mm_96277.1	chr11	62879393	62879593	+	1	NA	NA	NA	3	NM_026210	67510	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	0.090000	0.656716	
mm_39902.1	chr5	31242526	31242726	+	1	NA	NA	NA	1708	NM_147201	192292	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	0.005000	0.288557	75(ACCTATAAAAAC,-,0.00)
mm_144674.1	chr18	34624920	34625120	+	1	NA	NA	NA	-13	NM_001166406	19348	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	0.070000	0.592040	
mm_1350.1	chr1	66321655	66321855	+	1	NA	NA	NA	31	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.020000	0.512438	
mm_63621.1	chr7	128265583	128265783	+	1	NA	NA	NA	-14	NM_133254	246787	Mm.38870	NM_133254	ENSMUSG00000030781	Slc5a2	Sglt2	solute carrier family 5 (sodium/glucose cotransporter), member 2	protein-coding	0.015000	0.552239	
mm_82487.1	chr9	18469567	18469767	-	1	NA	NA	NA	3892	NM_028935	72230	Mm.289689	NM_028935	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	0.010000	0.407960	
mm_72124.1	chr8	71690292	71690492	+	1	NA	NA	NA	1140	NM_013564	16336	Mm.476857	NM_013564	ENSMUSG00000079019	Insl3	Rlf|Rlnl	insulin-like 3	protein-coding	0.025000	0.557214	
mm_98887.1	chr11	97833189	97833389	+	1	NA	NA	NA	-7491	NM_001080935	68127	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0.020000	0.407960	
mm_23061.1	chr3	35863704	35863904	+	1	NA	NA	NA	66270	NM_033623	114893	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.015000	0.432836	
mm_46286.1	chr5	100165486	100165686	-	1	NA	NA	NA	-5778	NM_182841	231503	Mm.99790	NM_182841	ENSMUSG00000050640	Tmem150c	-	transmembrane protein 150C	protein-coding	0.015000	0.457711	
mm_44611.1	chr5	25485630	25485830	-	1	NA	NA	NA	13053	NM_001081383	231051	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0.000000	0.333333	
mm_42665.1	chr5	119670926	119671126	+	1	NA	NA	NA	164	NM_198052	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.075000	0.616915	
mm_118662.1	chr14	21831756	21831956	+	1	NA	NA	NA	295	NM_011695	22334	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0.065000	0.616915	
mm_154774.1	chrX	12673183	12673383	+	1	NA	NA	NA	356	NM_175141	69155	Mm.15974	NM_175141	ENSMUSG00000044148	1810030O07Rik	-	RIKEN cDNA 1810030O07 gene	protein-coding	0.085000	0.666667	
mm_56297.1	chr6	91668441	91668641	-	1	NA	NA	NA	-15526	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.000000	0.527363	
mm_48748.1	chr5	147894717	147894917	-	1	NA	NA	NA	-15	NM_027872	71706	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	0.095000	0.661692	
mm_159548.1	chr4	96236491	96236691	-	1	NA	NA	NA	-95439	NM_001100182	242546	Mm.302562	NM_001100182	ENSMUSG00000081225	Cyp2j12	BB197342|Cyp2j12-ps|OTTMUSG00000007939	cytochrome P450, family 2, subfamily j, polypeptide 12	protein-coding	0.025000	0.552239	
mm_111645.1	chr12	102695466	102695666	-	1	NA	NA	NA	9303	NM_172584	217837	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.020000	0.537313	
mm_145813.1	chr18	65430531	65430731	+	1	NA	NA	NA	-366	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.075000	0.651741	
mm_143011.1	chr17	56455595	56455795	-	1	NA	NA	NA	6526	NM_001252456	19280	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.005000	0.547264	
mm_156025.1	chrX	107149382	107149582	+	1	NA	NA	NA	28	NM_001122595	213438	Mm.265244	NM_175442	ENSMUSG00000054293	A630033H20Rik	AI662791|P2ry10	RIKEN cDNA A630033H20 gene	protein-coding	0.010000	0.363184	
mm_125025.1	chr15	25742218	25742418	+	1	NA	NA	NA	-100980	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.035000	0.467662	
mm_61962.1	chr7	90302322	90302522	+	1	NA	NA	NA	67	NR_110348	83671	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	0.110000	0.736318	
mm_117432.1	chr13	74563752	74563952	-	1	NA	NA	NA	-69902	NM_146231	235956	Mm.296909	NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.045000	0.532338	
mm_132863.1	chr16	48594513	48594713	+	1	NA	NA	NA	163376	NM_010816	17450	Mm.250060	NM_010816	ENSMUSG00000022652	Morc1	Morc	microrchidia 1	protein-coding	0.020000	0.457711	
mm_104455.1	chr11	95041255	95041455	-	1	NA	NA	NA	16	NM_133667	18604	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	0.125000	0.726368	
mm_155209.1	chrX	56779586	56779786	+	1	NA	NA	NA	3	NM_001077362	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.010000	0.477612	
mm_31695.1	chr4	62407747	62407947	+	1	NA	NA	NA	776	NM_139291	66440	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	0.065000	0.472637	
mm_37860.1	chr4	132274202	132274402	-	1	NA	NA	NA	-73	NM_025579	66464	Mm.331926	NM_025579	ENSMUSG00000028899	Taf12	20kDa|2810422D08Rik|AW557038|Taf2J	TATA-box binding protein associated factor 12	protein-coding	0.100000	0.681592	
mm_51616.1	chr6	85187404	85187604	+	1	NA	NA	NA	-427	NM_010131	13796	Mm.391473	NM_010131	ENSMUSG00000033726	Emx1	-	empty spiracles homeobox 1	protein-coding	0.080000	0.696517	
mm_147149.1	chr18	36670193	36670393	-	1	NA	NA	NA	18	NM_001164406	24068	Mm.29058	NM_025291	ENSMUSG00000006050	Sra1	AA959952|Sra|Srap|Straa1|Strra1	steroid receptor RNA activator 1	protein-coding	0.085000	0.666667	
mm_124595.1	chr15	3274937	3275137	+	1	NA	NA	NA	4060	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.000000	0.358209	-100(GCATATAAAAGG,-,0.00)
mm_148705.1	chr19	5801764	5801964	+	1	NA	NA	NA	808	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.010000	0.353234	
mm_99321.1	chr11	101442387	101442587	+	1	NA	NA	NA	242	NM_011289	19942	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	0.080000	0.641791	
mm_77049.1	chr8	109576673	109576873	-	1	NA	NA	NA	2399	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.025000	0.482587	
mm_135532.1	chr16	49768665	49768865	-	1	NA	NA	NA	69471	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.015000	0.517413	-66(GGCCTTTAAAAC,-,0.00),-65(GCCTTTAAAACC,+,0.00),-64(CCTTTAAAACCT,+,0.00)
mm_4792.1	chr1	184694864	184695064	+	1	NA	NA	NA	-17533	NR_040627	74971	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	0.005000	0.398010	
mm_94522.1	chr11	9048503	9048703	+	1	NA	NA	NA	11	NM_001037928	626870	Mm.369429	NM_001037928	ENSMUSG00000040978	Gm11992	OTTMUSG00000005148	predicted gene 11992	protein-coding	0.070000	0.597015	
mm_55311.1	chr6	54992768	54992968	-	1	NA	NA	NA	-1	NM_026637	110175	Mm.294708	NM_026637	ENSMUSG00000002797	Ggct	A030007L17Rik|AA673177|Gctg|Ggc	gamma-glutamyl cyclotransferase	protein-coding	0.095000	0.646766	
mm_9268.1	chr1	171632774	171632974	-	1	NA	NA	NA	9026	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.537313	
mm_54563.1	chr6	37442025	37442225	-	1	NA	NA	NA	23	NM_178661	208647	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.040000	0.587065	
mm_39008.1	chr4	152031285	152031485	-	1	NA	NA	NA	-3714	NM_133879	100090	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3	zinc finger and BTB domain containing 48	protein-coding	0.020000	0.477612	
mm_34986.1	chr4	156026281	156026481	+	1	NA	NA	NA	39	NM_021985	21936	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	0.020000	0.597015	
mm_79714.1	chr9	61373272	61373472	+	1	NA	NA	NA	1006	NM_001083927	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.115000	0.716418	
mm_43148.1	chr5	125475777	125475977	+	1	NA	NA	NA	4	NM_030210	78894	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0.115000	0.701493	
mm_44425.1	chr5	20881974	20882174	-	1	NA	NA	NA	50	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.165000	0.776119	
mm_28695.1	chr3	95538654	95538854	-	1	NA	NA	NA	11968	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.025000	0.407960	
mm_30683.1	chr4	11321807	11322007	+	1	NA	NA	NA	224	NM_001081201	381510	Mm.331486	NM_001081201	ENSMUSG00000045205	Dpy19l4	Gm1023|Narg3	dpy-19-like 4 (C. elegans)	protein-coding	0.125000	0.706468	
mm_80022.1	chr9	67996307	67996507	+	1	NA	NA	NA	29307	NR_045745	434412	Mm.490707	NR_045745	ENSMUSG00000111841	Gm20745	-	predicted gene, 20745	ncRNA	0.025000	0.507463	
mm_150304.1	chr19	34570232	34570432	+	1	NA	NA	NA	-13197	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.005000	0.482587	
mm_109409.1	chr12	110447151	110447351	+	1	NA	NA	NA	72	NM_001135001	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.180000	0.835821	
mm_162702.1	chr10	21907863	21908063	-	1	NA	NA	NA	25779	NM_001161845	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.005000	0.482587	-33(AGCCATTAAAGC,-,0.00)
mm_84805.1	chr9	77261363	77261563	-	1	NA	NA	NA	86407	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.010000	0.477612	
mm_30879.1	chr4	32239333	32239533	+	1	NA	NA	NA	-178002	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.090000	0.701493	
mm_48944.1	chr6	4539482	4539682	+	1	NA	NA	NA	33964	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.030000	0.542289	
mm_99952.1	chr11	112787328	112787528	+	1	NA	NA	NA	5218	NM_011448	20682	Mm.286407	NM_011448	ENSMUSG00000000567	Sox9	2010306G03Rik|AV220920|mKIAA4243	SRY (sex determining region Y)-box 9	protein-coding	0.010000	0.288557	
mm_93270.1	chr10	95773553	95773753	-	1	NA	NA	NA	-167010	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.045000	0.562189	
mm_157980.1	chrX	94123071	94123271	-	1	NA	NA	NA	236	NM_011768	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	0.120000	0.741294	
mm_119717.1	chr14	53881468	53881668	+	1	NA	NA	NA	372361	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.512438	
mm_132819.1	chr16	45224018	45224218	+	1	NA	NA	NA	-219	NM_001037719	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.015000	0.457711	
mm_34396.1	chr4	145026778	145026978	+	1	NA	NA	NA	133741	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.010000	0.447761	
mm_133619.1	chr16	91561195	91561395	+	1	NA	NA	NA	14201	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.025000	0.522388	
mm_73130.1	chr8	94923579	94923779	+	1	NA	NA	NA	-15	NM_001033468	382045	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	0.025000	0.547264	-68(GGCCAGAAAAGC,-,0.00)
mm_69923.1	chr7	141884140	141884340	-	1	NA	NA	NA	18166	NM_023764	54473	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	0.015000	0.542289	
mm_45539.1	chr5	72812947	72813147	-	1	NA	NA	NA	55401	NM_001113461	21682	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.020000	0.532338	
mm_154212.1	chr19	59171390	59171590	-	1	NA	NA	NA	-1461	NM_009501	22326	Mm.23801	NM_009501	ENSMUSG00000006270	Vax1	-	ventral anterior homeobox 1	protein-coding	0.045000	0.582090	-35(CCCTTTTAAAAA,-,0.00),-34(CCTTTTAAAAAC,+,0.00),-33(CTTTTAAAAACC,+,0.00)
mm_118539.1	chr14	16388295	16388495	+	1	NA	NA	NA	23189	NM_009409	21974	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.010000	0.303483	
mm_61804.1	chr7	84568215	84568415	+	1	NA	NA	NA	37627	NM_010176	14085	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	-	fumarylacetoacetate hydrolase	protein-coding	0.005000	0.323383	
mm_38059.1	chr4	134012319	134012519	-	1	NA	NA	NA	6397	NM_145833	83557	Mm.302567	NM_145833	ENSMUSG00000050966	Lin28a	AL024421|ENSMUSG00000070700|Gm10299|Lin-28|Lin28|Tex17|lin-28A	lin-28 homolog A (C. elegans)	protein-coding	0.015000	0.487562	
mm_55009.1	chr6	48840376	48840576	-	1	NA	NA	NA	512	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.010000	0.547264	
mm_88690.1	chr10	80116284	80116484	+	1	NA	NA	NA	581	NM_001301854	20869	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.060000	0.532338	
mm_146052.1	chr18	69612540	69612740	+	1	NA	NA	NA	266919	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.020000	0.532338	
mm_12150.1	chr2	61804947	61805147	+	1	NA	NA	NA	594	NM_009322	21375	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.065000	0.611940	
mm_61255.1	chr7	65863029	65863229	+	1	NA	NA	NA	993	NM_011048	18553	Mm.294007	NM_011048	ENSMUSG00000030513	Pcsk6	C86343|Pace4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding	0.010000	0.517413	
mm_110845.1	chr12	73046613	73046813	-	1	NA	NA	NA	-1	NM_009189	20471	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0.105000	0.681592	-31(GCTTTAAGGCCG,+,0.00)
mm_46156.1	chr5	96115508	96115708	-	1	NA	NA	NA	45939	NM_001285511	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.000000	0.278607	
mm_137984.1	chr17	33600630	33600830	+	1	NA	NA	NA	-28362	NR_034153	328801	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	0.010000	0.492537	
mm_162648.1	chr1	195176571	195176771	-	1	NA	NA	NA	44	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0.050000	0.616915	-80(TGCTATTTAAGG,-,0.00)
mm_58232.1	chr6	145028532	145028732	-	1	NA	NA	NA	20180	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.010000	0.393035	
mm_134573.1	chr16	20400997	20401197	-	1	NA	NA	NA	25297	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.010000	0.383085	
mm_157061.1	chrX	8132725	8132925	-	1	NA	NA	NA	33	NM_001290783	73447	Mm.284162	NM_026137	ENSMUSG00000031166	Wdr13	1700060B08Rik|5730411P10Rik|DXHXS7467e|W51679|mMg21	WD repeat domain 13	protein-coding	0.055000	0.601990	-82(GTCCTTTAATGC,-,0.00),-80(CCTTTAATGCGC,+,0.00)
mm_104480.1	chr11	95569908	95570108	-	1	NA	NA	NA	17690	NM_033217	18053	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	0.010000	0.537313	
mm_130121.1	chr15	89568136	89568336	-	1	NA	NA	NA	-90	NM_013455	11434	Mm.57	NM_013455	ENSMUSG00000022622	Acr	-	acrosin prepropeptide	protein-coding	0.015000	0.567164	
mm_55357.1	chr6	56901818	56902018	-	1	NA	NA	NA	-32	NM_001252374	107569	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0.040000	0.502488	
mm_39144.1	chr4	155345584	155345784	-	1	NA	NA	NA	105	NM_001039079	18762	Mm.28561	NM_008860	ENSMUSG00000029053	Prkcz	AI098070|C80388|Pkcz|R74924|aPKCzeta|nPKC-zeta|zetaPKC	protein kinase C, zeta	protein-coding	0.055000	0.631841	
mm_126653.1	chr15	84167735	84167935	+	1	NA	NA	NA	19	NM_054088	116939	Mm.390817	NM_054088	ENSMUSG00000041653	Pnpla3	Adpn	patatin-like phospholipase domain containing 3	protein-coding	0.065000	0.616915	-33(GGCTCTTTAAGC,-,0.00)
mm_80427.1	chr9	77921379	77921579	+	1	NA	NA	NA	4114	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.030000	0.572139	
mm_53819.1	chr6	147096453	147096653	+	1	NA	NA	NA	5478	NM_001081237	232539	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	0.005000	0.407960	
mm_3944.1	chr1	163903586	163903786	+	1	NA	NA	NA	-25414	NM_001286002	240880	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0.015000	0.398010	
mm_149822.1	chr19	24415908	24416108	+	1	NA	NA	NA	61466	NM_026520	68034	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding	0.010000	0.472637	
mm_139564.1	chr17	56990207	56990407	+	1	NA	NA	NA	43	NM_017393	53895	Mm.287892	NM_017393	ENSMUSG00000002660	Clpp	AU019820|D17Wsu160e	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding	0.085000	0.616915	
mm_137971.1	chr17	33556295	33556495	+	1	NA	NA	NA	688	NM_053214	17916	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0.005000	0.452736	
mm_87784.1	chr10	60296712	60296912	+	1	NA	NA	NA	12351	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.005000	0.283582	
mm_134607.1	chr16	20716063	20716263	-	1	NA	NA	NA	473	NM_009900	12724	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	0.135000	0.791045	
mm_103013.1	chr11	69734674	69734874	-	1	NA	NA	NA	23859	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.000000	0.522388	
mm_40524.1	chr5	57918669	57918869	+	1	NA	NA	NA	200688	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.000000	0.378109	
mm_8116.1	chr1	135919257	135919457	-	1	NA	NA	NA	-150	NM_019645	18772	Mm.4494	NM_019645	ENSMUSG00000026413	Pkp1	-	plakophilin 1	protein-coding	0.060000	0.686567	
mm_39546.1	chr5	21645770	21645970	+	1	NA	NA	NA	-114	NM_026034	67211	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	0.060000	0.656716	
mm_155293.1	chrX	61183800	61184000	+	1	NA	NA	NA	1658	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.005000	0.373134	
mm_121463.1	chr14	120896745	120896945	+	1	NA	NA	NA	-14349	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	0.020000	0.527363	
mm_21145.1	chr2	154363881	154364081	-	1	NA	NA	NA	8738	NM_025876	66971	Mm.289427	NM_025876	ENSMUSG00000027487	Cdk5rap1	2310066P17Rik	CDK5 regulatory subunit associated protein 1	protein-coding	0.010000	0.472637	
mm_159934.1	chr6	71871106	71871306	+	1	NA	NA	NA	37556	NM_027275	69956	Mm.30256	NM_027275	ENSMUSG00000063884	Ptcd3	2610034F17Rik|2810422B04Rik|AA589622|AU045708|MRP-S39	pentatricopeptide repeat domain 3	protein-coding	0.005000	0.437811	
mm_35360.1	chr4	32363341	32363541	-	1	NA	NA	NA	-53994	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.015000	0.502488	
mm_78186.1	chr9	21235506	21235706	+	1	NA	NA	NA	3726	NM_016679	50868	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.010000	0.532338	
mm_93099.1	chr10	89745675	89745875	-	1	NA	NA	NA	784	NM_029166	75089	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0.070000	0.492537	
mm_85781.1	chr9	109058580	109058780	-	1	NA	NA	NA	571	NM_001012236	22040	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	0.035000	0.601990	
mm_163280.1	chr11	116532400	116532600	+	1	NA	NA	NA	56	NM_001172473	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.045000	0.597015	
mm_76849.1	chr8	105326165	105326365	-	1	NA	NA	NA	11	NM_177449	234684	Mm.381717	NM_177449	ENSMUSG00000041679	Lrrc29	A630024J02Rik|FBL9|FBXL9	leucine rich repeat containing 29	protein-coding	0.085000	0.651741	
mm_145195.1	chr18	49884830	49885030	+	1	NA	NA	NA	51933	NM_001081371	240283	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0.015000	0.477612	
mm_86897.1	chr10	22302938	22303138	+	1	NA	NA	NA	-3682	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.000000	0.412935	
mm_156707.1	chrX	159627182	159627382	+	1	NA	NA	NA	10	NM_001135727	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.095000	0.631841	
mm_99807.1	chr11	108381069	108381269	+	1	NA	NA	NA	-14128	NM_013475	11818	Mm.2266	NM_013475	ENSMUSG00000000049	Apoh	B2GPI|beta-2-GPI|beta2-GPI	apolipoprotein H	protein-coding	0.010000	0.502488	-21(CCTTTTAGGAGG,+,0.00)
mm_169078.1	chr13	3236544	3236744	+	1	NA	NA	NA	87169	NR_001581	73266	Mm.335891	NR_001581		Speer6-ps1	1700039A02Rik|SPEER-6	spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1	pseudo	0.025000	0.492537	
mm_80048.1	chr9	69289805	69290005	+	1	NA	NA	NA	64	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.120000	0.731343	-22(CCTCTTATGGCT,+,0.00)
mm_92838.1	chr10	81499533	81499733	-	1	NA	NA	NA	504	NM_010102	13611	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0.030000	0.601990	
mm_66000.1	chr7	30559526	30559726	-	1	NA	NA	NA	20	NM_029377	75660	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	0.040000	0.557214	
mm_50742.1	chr6	52729251	52729451	+	1	NA	NA	NA	15622	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.020000	0.417910	
mm_1231.1	chr1	62768915	62769115	+	1	NA	NA	NA	25717	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.015000	0.567164	
mm_1356.1	chr1	66321933	66322133	+	1	NA	NA	NA	309	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.035000	0.532338	
mm_157567.1	chrX	52541897	52542097	-	1	NA	NA	NA	-33846	NR_045367	100504594	Mm.447008	NR_045367	ENSMUSG00000055110	A630012P03Rik	-	RIKEN cDNA A630012P03 gene	ncRNA	0.000000	0.358209	
mm_21638.1	chr2	164327523	164327723	-	1	NA	NA	NA	-5142	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.020000	0.437811	
mm_51368.1	chr6	72699083	72699283	+	1	NA	NA	NA	69352	NR_040421	100038714	Mm.321330	NR_040421		Gm15401	ENSMUSG00000072999|OTTMUSG00000021199	predicted gene 15401	ncRNA	0.010000	0.482587	
mm_7330.1	chr1	105157774	105157974	-	1	NA	NA	NA	198836	NM_178779	320311	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	0.000000	0.452736	
mm_208.1	chr1	16656882	16657082	+	1	NA	NA	NA	-117	NM_026456	67923	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	0.085000	0.616915	80(GCCCATTTAAGA,-,0.00)
mm_45357.1	chr5	65935559	65935759	-	1	NA	NA	NA	-31465	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.000000	0.542289	
mm_56694.1	chr6	114464235	114464435	-	1	NA	NA	NA	5813	NM_001317124	15465	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.005000	0.487562	
mm_171596.1	chr4	147702502	147702702	-	1	NA	NA	NA	29	NM_001127188	100503584	Mm.276881	NM_001127188	ENSMUSG00000062518	Zfp534	Gm13159|OTTMUSG00000010681	zinc finger protein 534	protein-coding	0.015000	0.492537	
mm_61885.1	chr7	89632872	89633072	+	1	NA	NA	NA	154	NM_181407	109264	Mm.334011	NM_181407	ENSMUSG00000030621	Me3	1700020C08Rik|B230207H15Rik	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding	0.100000	0.696517	
mm_42146.1	chr5	111418557	111418757	+	1	NA	NA	NA	491	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.080000	0.706468	
mm_100732.1	chr11	3931941	3932141	-	1	NA	NA	NA	3	NM_015749	21452	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	0.035000	0.567164	
mm_48767.1	chr5	148399768	148399968	-	1	NA	NA	NA	36	NM_007513	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.135000	0.741294	
mm_53804.1	chr6	146861860	146862060	+	1	NA	NA	NA	11850	NM_027059	69371	Mm.252733	NM_027059	ENSMUSG00000030292	Smco2	1700023A16Rik	single-pass membrane protein with coiled-coil domains 2	protein-coding	0.010000	0.601990	
mm_130610.1	chr15	99875315	99875515	-	1	NA	NA	NA	41	NM_001113545	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.130000	0.751244	
mm_69685.1	chr7	139989207	139989407	-	1	NA	NA	NA	-2433	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.020000	0.542289	
mm_65240.1	chr7	19796709	19796909	-	1	NA	NA	NA	0	NM_001161844	80794	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0.075000	0.711443	
mm_108568.1	chr12	84806931	84807131	+	1	NA	NA	NA	33761	NM_028863	74316	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0.020000	0.457711	
mm_54674.1	chr6	39377523	39377723	-	1	NA	NA	NA	84	NM_028123	72144	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0.125000	0.736318	
mm_21823.1	chr2	165297368	165297568	-	1	NA	NA	NA	-9630	NR_045544	228875	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.055000	0.611940	
mm_49140.1	chr6	9104974	9105174	+	1	NA	NA	NA	155055	NM_008751	18231	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.005000	0.298507	47(GTCTTTAAAGGC,+,0.00),47(GTCTTTAAAGGC,-,0.00),48(TCTTTAAAGGCC,+,0.00)
mm_173041.1	chrX	114592460	114592660	-	1	NA	NA	NA	118227	NM_001290477	237010	Mm.132583	NM_172781	ENSMUSG00000025597	Klhl4	B130014A11|C130018J01Rik	kelch-like 4	protein-coding	0.040000	0.507463	-25(ACCTATAAAAAA,-,0.00)
mm_93419.1	chr10	108699691	108699891	-	1	NA	NA	NA	369	NM_203660	368203	Mm.452758	NM_203660		Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding	0.040000	0.492537	
mm_70379.1	chr8	10154027	10154227	+	1	NA	NA	NA	216	NM_001319151	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.115000	0.726368	
mm_81984.1	chr9	121382698	121382898	+	1	NA	NA	NA	15840	NM_175114	67095	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.035000	0.552239	
mm_105436.1	chr11	104341186	104341386	-	1	NA	NA	NA	101005	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.005000	0.467662	
mm_154745.1	chrX	10485042	10485242	+	1	NA	NA	NA	26	NM_019634	21912	Mm.18590	NM_019634	ENSMUSG00000058254	Tspan7	1200014P11Rik|A15|AI323365|Cd231|Mxs1|PE31|R74651|TALLA|Tm4sf2	tetraspanin 7	protein-coding	0.090000	0.676617	
mm_5239.1	chr1	16104084	16104284	-	1	NA	NA	NA	249	NM_011291	19989	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	0.070000	0.601990	
mm_148794.1	chr19	6171861	6172061	+	1	NA	NA	NA	7503	NM_028967	74481	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	4933430F08Rik	basic leucine zipper transcription factor, ATF-like 2	protein-coding	0.005000	0.547264	
mm_122931.1	chr14	54961676	54961876	-	1	NA	NA	NA	4831	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.010000	0.557214	
mm_82542.1	chr9	20879628	20879828	-	1	NA	NA	NA	-18	NM_145154	70726	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	0.020000	0.517413	
mm_129922.1	chr15	84436197	84436397	-	1	NA	NA	NA	10313	NM_001347543	72301	Mm.275387	NM_001163145	ENSMUSG00000062760	1810041L15Rik	Kiaa1644	RIKEN cDNA 1810041L15 gene	protein-coding	0.010000	0.517413	
mm_129327.1	chr15	77771761	77771961	-	1	NA	NA	NA	-16632	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.070000	0.671642	
mm_37334.1	chr4	119656614	119656814	-	1	NA	NA	NA	2231	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.010000	0.492537	17(CAGCATAAATGG,-,0.00)
mm_37273.1	chr4	118620645	118620845	-	1	NA	NA	NA	-54	NM_026932	69072	Mm.29906	NM_026932	ENSMUSG00000028729	Ebna1bp2	1810014B19Rik|AA537058|B830003A16Rik|C81321|Ebp2|Nobp|p40	EBNA1 binding protein 2	protein-coding	0.055000	0.512438	-98(CCTTTTCAACAG,+,0.00)
mm_32149.1	chr4	99829350	99829550	+	1	NA	NA	NA	-50	NM_145549	230500	Mm.331727	NM_145549	ENSMUSG00000073791	Efcab7	mKIAA1799	EF-hand calcium binding domain 7	protein-coding	0.070000	0.532338	
mm_114254.1	chr13	56703341	56703541	+	1	NA	NA	NA	-227	NM_001164042	17129	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.185000	0.791045	
mm_39055.1	chr4	153957067	153957267	-	1	NA	NA	NA	-70	NM_175287	97159	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding	0.175000	0.736318	
mm_34132.1	chr4	139286947	139287147	+	1	NA	NA	NA	23653	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.020000	0.562189	
mm_166925.1	chr7	31263640	31263840	+	1	NA	NA	NA	4	NM_001310660	100043827		NM_001310660		Scgb2b1	Abpbg1|Gm4677	secretoglobin, family 2B, member 1	protein-coding	0.005000	0.527363	-36(TGGTTTATAAGG,-,0.00)
mm_3190.1	chr1	135800734	135800934	+	1	NA	NA	NA	1323	NM_001112702	21952	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	0.010000	0.577114	
mm_83497.1	chr9	45946873	45947073	-	1	NA	NA	NA	-7383	NR_106055	102465659		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.045000	0.577114	
mm_86256.1	chr9	121495611	121495811	-	1	NA	NA	NA	-17	NM_031161	12424	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.045000	0.601990	13(AGCTATTTAAGA,-,0.00)
mm_43616.1	chr5	138089189	138089389	+	1	NA	NA	NA	4205	NM_029869	74570	Mm.213114	NM_029869	ENSMUSG00000029729	Zkscan1	5930429A01Rik|9130423L19Rik|9230118B16Rik|AI646829|AI788588|C87323|KOX18|PHZ-37|ZNF139	zinc finger with KRAB and SCAN domains 1	protein-coding	0.010000	0.452736	
mm_91681.1	chr10	43829096	43829296	-	1	NA	NA	NA	3289	NR_131055	71018	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0.005000	0.452736	
mm_77167.1	chr8	111689304	111689504	-	1	NA	NA	NA	270	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.025000	0.616915	
mm_18065.1	chr2	42163496	42163696	-	1	NA	NA	NA	283972	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.000000	0.402985	-62(CCTTTAATGTGG,+,0.00)
mm_170042.1	chr17	24414597	24414797	+	1	NA	NA	NA	22	NM_001080128	19826	Mm.1951	NM_009070	ENSMUSG00000034681	Rnps1	-	ribonucleic acid binding protein S1	protein-coding	0.100000	0.631841	
mm_9863.1	chr1	184827160	184827360	-	1	NA	NA	NA	-4772	NR_035502	100316821		NR_035502	ENSMUSG00000088559	Mir1981	mir-1981|mmu-mir-1981	microRNA 1981	ncRNA	0.055000	0.577114	
mm_89846.1	chr10	106879900	106880100	+	1	NA	NA	NA	243664	NM_001142804	380660	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding	0.010000	0.427861	
mm_74524.1	chr8	9428569	9428769	-	1	NA	NA	NA	284000	NR_073360	74688	Mm.159298	NR_073360	ENSMUSG00000109215	4930453L07Rik	-	RIKEN cDNA 4930453L07 gene	ncRNA	0.015000	0.437811	
mm_14828.1	chr2	147029771	147029971	+	1	NA	NA	NA	16811	NM_011917	24128	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	0.000000	0.303483	
mm_74953.1	chr8	25994024	25994224	-	1	NA	NA	NA	-3	NM_029037	74653	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	0.105000	0.686567	
mm_76470.1	chr8	85386196	85386396	-	1	NA	NA	NA	-5255	NM_001297612	213435	Mm.32804	NM_175441	ENSMUSG00000031698	Mylk3	D830007F02Rik|MLCK	myosin light chain kinase 3	protein-coding	0.020000	0.517413	
mm_71597.1	chr8	54955122	54955322	+	1	NA	NA	NA	494	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.025000	0.497512	
mm_59995.1	chr7	30563713	30563913	+	1	NA	NA	NA	473	NM_170760	233073	Mm.34790	NM_170760	ENSMUSG00000078765	U2af1l4	AA407033|AF419339|AI451269|AW553050|U2af26	U2 small nuclear RNA auxiliary factor 1-like 4	protein-coding	0.025000	0.572139	
mm_37760.1	chr4	129672688	129672888	-	1	NA	NA	NA	-21	NM_008468	16650	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	0.100000	0.606965	-86(TTCTCTTTAAGC,-,0.00),-84(CTCTTTAAGCCC,+,0.00)
mm_35396.1	chr4	34551342	34551542	-	1	NA	NA	NA	827	NM_001007589	433693	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.040000	0.552239	
mm_82323.1	chr9	8004540	8004740	-	1	NA	NA	NA	-44	NM_009534	22601	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	0.150000	0.706468	
mm_53998.1	chr6	7677227	7677427	-	1	NA	NA	NA	15855	NM_012055	27053	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0.030000	0.497512	
mm_52190.1	chr6	99692270	99692470	+	1	NA	NA	NA	-309	NM_008158	14761	Mm.35009	NM_008158	ENSMUSG00000072875	Gpr27	-	G protein-coupled receptor 27	protein-coding	0.160000	0.820896	
mm_38425.1	chr4	139290988	139291188	-	1	NA	NA	NA	19612	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.050000	0.512438	
mm_111844.1	chr12	107938643	107938843	-	1	NA	NA	NA	64671	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.005000	0.417910	
mm_94632.1	chr11	16846226	16846426	+	1	NA	NA	NA	94123	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.005000	0.417910	
mm_15619.1	chr2	160891886	160892086	+	1	NA	NA	NA	3818	NM_001199118	64899	Mm.292111	NM_022883	ENSMUSG00000027412	Lpin3	9130206L11Rik|AA438110|AV236139|mKIAA4023	lipin 3	protein-coding	0.035000	0.562189	
mm_76615.1	chr8	91135608	91135808	-	1	NA	NA	NA	-214	NM_010241	14339	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	0.040000	0.552239	-92(GGCCAGAAAAGG,-,0.00)
mm_70682.1	chr8	14996057	14996257	+	1	NA	NA	NA	-14868	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.025000	0.547264	40(TCTTAAAAAGGA,+,0.00)
mm_63209.1	chr7	126272336	126272536	+	1	NA	NA	NA	-183	NM_145587	104175	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.200000	0.830846	
mm_110603.1	chr12	56535983	56536183	-	1	NA	NA	NA	825	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.075000	0.716418	
mm_12583.1	chr2	73322653	73322853	+	1	NA	NA	NA	10101	NM_029022	74616	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	0.020000	0.542289	55(CCTTATAAAAGA,+,0.00),55(CCTTATAAAAGA,-,0.00)
mm_112966.1	chr13	21183768	21183968	+	1	NA	NA	NA	3937	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.035000	0.557214	
mm_53270.1	chr6	128424622	128424822	+	1	NA	NA	NA	188	NM_133927	101142	Mm.31345	NM_133927	ENSMUSG00000001518	Itfg2	2700050P07Rik|AI646725	integrin alpha FG-GAP repeat containing 2	protein-coding	0.100000	0.611940	
mm_110443.1	chr12	50932626	50932826	-	1	NA	NA	NA	-72430	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA	0.015000	0.492537	
mm_169504.1	chr14	78996893	78997093	+	1	NA	NA	NA	147815	NM_173758	219189	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	0.035000	0.487562	-30(CCTTTTAAAAAA,+,0.00)
mm_157821.1	chrX	74074817	74075017	-	1	NA	NA	NA	10773	NM_010788	17257	Mm.131408	NM_010788	ENSMUSG00000031393	Mecp2	1500041B07Rik|D630021H01Rik|Mbd5|WBP10	methyl CpG binding protein 2	protein-coding	0.000000	0.388060	
mm_56122.1	chr6	87532546	87532746	-	1	NA	NA	NA	613	NM_001037727	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.020000	0.507463	
mm_37798.1	chr4	130520153	130520353	-	1	NA	NA	NA	53783	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.055000	0.626866	
mm_105202.1	chr11	102097478	102097678	-	1	NA	NA	NA	3722	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.035000	0.582090	
mm_141024.1	chr17	25184292	25184492	-	1	NA	NA	NA	-169	NM_183150	214489	Mm.274433	NM_183150	ENSMUSG00000067722	BC003965	Ccsmst1	cDNA sequence BC003965	protein-coding	0.075000	0.552239	
mm_76916.1	chr8	105932931	105933131	-	1	NA	NA	NA	831	NM_023182	109660	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.030000	0.542289	
mm_70771.1	chr8	21970499	21970699	+	1	NA	NA	NA	3	NM_026459	67929	Mm.60688	NM_026459	ENSMUSG00000017049	Ccdc70	1700112P19Rik	coiled-coil domain containing 70	protein-coding	0.000000	0.328358	46(AAGTATATAAGG,-,0.00)
mm_10900.1	chr2	25288043	25288243	+	1	NA	NA	NA	-2	NM_030055	78217	Mm.160057	NM_030055	ENSMUSG00000026963	Tmem210	4930571C24Rik	transmembrane protein 210	protein-coding	0.000000	0.597015	
mm_78740.1	chr9	41591653	41591853	+	1	NA	NA	NA	9827	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA	0.000000	0.378109	
mm_2275.1	chr1	91250481	91250681	+	1	NA	NA	NA	262	NM_026454	67921	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0.160000	0.810945	
mm_142149.1	chr17	36015494	36015694	-	1	NA	NA	NA	4966	NM_008207	15042	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0.025000	0.552239	
mm_129792.1	chr15	82852564	82852764	-	1	NA	NA	NA	45797	NR_027799	21378	Mm.417272	NR_027799		Tbrg3	TB-11	transforming growth factor beta regulated gene 3	ncRNA	0.005000	0.492537	84(CCCCCTAAAGGG,-,0.00)
mm_152272.1	chr19	8819144	8819344	-	1	NA	NA	NA	50	NM_027412	70387	Mm.261082	NM_027412	ENSMUSG00000071660	Ttc9c	2210019E14Rik|6330408J23Rik	tetratricopeptide repeat domain 9C	protein-coding	0.050000	0.582090	
mm_134554.1	chr16	20097991	20098191	-	1	NA	NA	NA	537	NM_029436	75785	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	0.110000	0.696517	
mm_142070.1	chr17	35697676	35697876	-	1	NA	NA	NA	2814	NM_001198833	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.000000	0.601990	
mm_28310.1	chr3	89244918	89245118	-	1	NA	NA	NA	-5	NR_121683	360213	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.020000	0.567164	
mm_12054.1	chr2	59238904	59239104	+	1	NA	NA	NA	78154	NM_175464	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.000000	0.293532	46(CCTTTTATAATA,+,0.00)
mm_160235.1	chr7	103603663	103603863	+	1	NA	NA	NA	174	NM_147076	259080	Mm.377827	NM_147076	ENSMUSG00000073944	Olfr619	MOR31-5	olfactory receptor 619	protein-coding	0.000000	0.378109	
mm_169099.1	chr1	34116029	34116229	+	1	NA	NA	NA	-1230	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.040000	0.422886	
mm_71283.1	chr8	40920254	40920454	+	1	NA	NA	NA	-5879	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.010000	0.417910	
mm_41585.1	chr5	93205912	93206112	+	1	NA	NA	NA	483	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.105000	0.711443	
mm_99068.1	chr11	99168244	99168444	+	1	NA	NA	NA	-13267	NM_007719	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.020000	0.577114	
mm_18576.1	chr2	66102484	66102684	-	1	NA	NA	NA	22209	NM_015736	14425	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.020000	0.457711	
mm_92005.1	chr10	62327663	62327863	-	1	NA	NA	NA	12658	NM_001146100	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.045000	0.557214	
mm_18277.1	chr2	52401219	52401419	-	1	NA	NA	NA	23555	NM_182994	75423	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.005000	0.263682	
mm_64017.1	chr7	140247191	140247391	+	1	NA	NA	NA	-10	NM_175533	244234	Mm.85125	NM_175533	ENSMUSG00000054672	5830411N06Rik	Scart2	RIKEN cDNA 5830411N06 gene	protein-coding	0.005000	0.532338	
mm_143638.1	chr17	79020672	79020872	-	1	NA	NA	NA	44	NM_001171004	75292	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	0.165000	0.776119	
mm_11372.1	chr2	31060366	31060566	+	1	NA	NA	NA	36034	NM_001177650	14269	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.005000	0.477612	
mm_22912.1	chr3	31093800	31094000	+	1	NA	NA	NA	-1158	NM_011386	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.050000	0.472637	
mm_26060.1	chr3	135826136	135826336	+	1	NA	NA	NA	446	NM_001135150	67547	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.045000	0.616915	
mm_163921.1	chr14	44500067	44500267	+	1	NA	NA	NA	45	NM_198677	385138	Mm.293026	NM_198677	ENSMUSG00000072145	BC061237	-	cDNA sequence BC061237	protein-coding	0.000000	0.437811	
mm_52496.1	chr6	114759288	114759488	+	1	NA	NA	NA	116291	NM_001253717	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.000000	0.363184	
mm_40534.1	chr5	57947851	57948051	+	1	NA	NA	NA	229870	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.010000	0.388060	-45(GGCTTTAAAGAA,-,0.00)
mm_35977.1	chr4	53564594	53564794	-	1	NA	NA	NA	-66777	NM_176966	319636	Mm.103464	NM_176966	ENSMUSG00000054752	Fsd1l	A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl|OTTMUSG00000007002	fibronectin type III and SPRY domain containing 1-like	protein-coding	0.010000	0.462687	
mm_108307.1	chr12	79386046	79386246	+	1	NA	NA	NA	88795	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.010000	0.343284	
mm_45663.1	chr5	77158812	77159012	-	1	NA	NA	NA	-43789	NM_175606	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.030000	0.482587	
mm_77217.1	chr8	115018874	115019074	-	1	NA	NA	NA	579322	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.010000	0.368159	
mm_28252.1	chr3	88531287	88531487	-	1	NA	NA	NA	-1008	NM_001029890	72640	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0.055000	0.666667	
mm_20880.1	chr2	148771360	148771560	-	1	NA	NA	NA	37	NM_030059	78240	Mm.99424	NM_030059	ENSMUSG00000036958	Cst11	9230101F08Rik|BB067629|CRES2|mCSTE1	cystatin 11	protein-coding	0.025000	0.507463	
mm_133340.1	chr16	81200632	81200832	+	1	NA	NA	NA	35	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.170000	0.815920	
mm_67640.1	chr7	84410032	84410232	-	1	NA	NA	NA	-94	NM_007488	11864	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding	0.145000	0.786070	
mm_32933.1	chr4	119255310	119255510	+	1	NA	NA	NA	-31	NM_153105	242653	Mm.130701	NM_153105	ENSMUSG00000066058	Cldn19	-	claudin 19	protein-coding	0.020000	0.606965	
mm_171486.1	chr4	146097195	146097395	+	1	NA	NA	NA	-17	NM_001037926	626316	Mm.270762	NM_001037926	ENSMUSG00000066009	Zfp987	Gm13051|OTTMUSG00000010104|OTTMUSG00000010173	zinc finger protein 987	protein-coding	0.015000	0.487562	
mm_131049.1	chr16	4029717	4029917	+	1	NA	NA	NA	-7328	NM_010061	13419	Mm.291048	NM_010061	ENSMUSG00000005980	Dnase1	AI788650|DNaseI|Dnl1	deoxyribonuclease I	protein-coding	0.005000	0.552239	
mm_107866.1	chr12	69907722	69907922	+	1	NA	NA	NA	-14659	NM_201519	399510	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	0.040000	0.577114	
mm_99824.1	chr11	108920278	108920478	+	1	NA	NA	NA	29	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.125000	0.721393	-62(GTCCCTTTAAGG,-,0.00),-60(CCCTTTAAGGCG,+,0.00),-59(CCTTTAAGGCGG,+,0.00)
mm_148612.1	chr19	5366708	5366908	+	1	NA	NA	NA	-5	NM_027236	69860	Mm.299167	NM_027236	ENSMUSG00000024841	Eif1ad	2010003J03Rik|AI131644	eukaryotic translation initiation factor 1A domain containing	protein-coding	0.095000	0.611940	
mm_161269.1	chr14	7105117	7105317	-	1	NA	NA	NA	240	NM_001024712	100042149	Mm.396155	NM_001024712	ENSMUSG00000092167	Gm3696	ENSMUSG00000056940|Gm10014	predicted gene 3696	protein-coding	0.065000	0.616915	
mm_92701.1	chr10	80713902	80714102	-	1	NA	NA	NA	11309	NM_027829	71564	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.030000	0.547264	82(GTCCCTAAAAGG,-,0.00)
mm_88307.1	chr10	75406848	75407048	+	1	NA	NA	NA	37	NM_133995	103149	Mm.441195	NM_133995	ENSMUSG00000033427	Upb1	AI195023	ureidopropionase, beta	protein-coding	0.020000	0.597015	
mm_95188.1	chr11	42421203	42421403	+	1	NA	NA	NA	-47	NM_001347314	14401	Mm.338723	NM_008070	ENSMUSG00000007653	Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding	0.045000	0.522388	
mm_108363.1	chr12	80791363	80791563	+	1	NA	NA	NA	931	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.020000	0.497512	
mm_11744.1	chr2	38351110	38351310	+	1	NA	NA	NA	-98	NM_010710	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.080000	0.666667	
mm_167182.1	chr7	141745456	141745656	+	1	NA	NA	NA	-43455	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.015000	0.527363	
mm_143169.1	chr17	57226158	57226358	-	1	NA	NA	NA	1878	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.020000	0.522388	
mm_40413.1	chr5	53067597	53067797	+	1	NA	NA	NA	18344	NM_011402	20531	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	0.005000	0.522388	
mm_4867.1	chr1	187742244	187742444	+	1	NA	NA	NA	133338	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.015000	0.502488	
mm_8043.1	chr1	135283936	135284136	-	1	NA	NA	NA	48	NM_145417	215615	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	0.125000	0.726368	
mm_103984.1	chr11	84827268	84827468	-	1	NA	NA	NA	1635	NM_177564	192970	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	0.005000	0.477612	
mm_46415.1	chr5	104094603	104094803	-	1	NA	NA	NA	-17095	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.025000	0.427861	
mm_12780.1	chr2	79329425	79329625	+	1	NA	NA	NA	74099	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.005000	0.343284	
mm_141782.1	chr17	34296072	34296272	-	1	NA	NA	NA	-8401	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.030000	0.492537	
mm_64031.1	chr7	140769470	140769670	+	1	NA	NA	NA	5738	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.025000	0.497512	
mm_122661.1	chr14	51912258	51912458	-	1	NA	NA	NA	1130	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.015000	0.432836	
mm_126426.1	chr15	80572489	80572689	+	1	NA	NA	NA	-8	NM_001289442	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.020000	0.557214	
mm_161462.1	chr15	77508171	77508371	+	1	NA	NA	NA	0	NM_001177533	626615	Mm.390820	NM_001177533	ENSMUSG00000091650	Apol11a	EG626615	apolipoprotein L 11a	protein-coding	0.000000	0.482587	
mm_34875.1	chr4	155563214	155563414	+	1	NA	NA	NA	-501	NM_001159637	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.035000	0.542289	
mm_115920.1	chr13	23543293	23543493	-	1	NA	NA	NA	51	NM_178197	319182	Mm.352273	NM_178197	ENSMUSG00000064168	Hist1h2bh	H2b-221	histone cluster 1, H2bh	protein-coding	0.030000	0.502488	
mm_15379.1	chr2	156475825	156476025	+	1	NA	NA	NA	391	NM_001006664	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.145000	0.805970	
mm_157932.1	chrX	81821483	81821683	-	1	NA	NA	NA	-363461	NM_173435	245492	Mm.109633	NM_173435	ENSMUSG00000060673	4930595M18Rik	-	RIKEN cDNA 4930595M18 gene	protein-coding	0.015000	0.457711	
mm_19318.1	chr2	90563067	90563267	-	1	NA	NA	NA	17480	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.005000	0.402985	
mm_70409.1	chr8	11398663	11398863	+	1	NA	NA	NA	-79166	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.020000	0.626866	
mm_35998.1	chr4	56224432	56224632	-	1	NA	NA	NA	516893	NM_025271	11471	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Tact1	actin-like 7b	protein-coding	0.005000	0.522388	
mm_131523.1	chr16	17619394	17619594	+	1	NA	NA	NA	140	NM_001164609	77626	Mm.34659	NM_029945	ENSMUSG00000005899	Smpd4	4122402O22Rik|mKIAA1418	sphingomyelin phosphodiesterase 4	protein-coding	0.100000	0.701493	
mm_117051.1	chr13	58391824	58392024	-	1	NA	NA	NA	962	NR_029825	723902		NR_029825	ENSMUSG00000065434	Mir7-1	Mir7a1|Mirn7-1|miR-7a1|mir-7a-1|mmu-miR-7a1|mmu-mir-7-1	microRNA 7-1	ncRNA	0.005000	0.333333	
mm_81521.1	chr9	110053215	110053415	+	1	NA	NA	NA	1294	NM_001311164	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.015000	0.502488	
mm_151458.1	chr19	58231008	58231208	+	1	NA	NA	NA	-65096	NR_040449	791347	Mm.452208	NR_040449		Gm10007	ENSMUSG00000056739	predicted gene 10007	ncRNA	0.005000	0.462687	
mm_84585.1	chr9	69760830	69761030	-	1	NA	NA	NA	10	NM_022378	64290	Mm.440890	NM_022378	ENSMUSG00000059246	Foxb1	C43|Fkh5|Foxb1a|Foxb1b|Hfh-e5.1|Mf3|Twh	forkhead box B1	protein-coding	0.035000	0.562189	
mm_53256.1	chr6	127796398	127796598	+	1	NA	NA	NA	-8355	NR_106092	102466996		NR_106092	ENSMUSG00000104804	Mir7233	mmu-mir-7233	microRNA 7233	ncRNA	0.005000	0.482587	
mm_41945.1	chr5	105731783	105731983	+	1	NA	NA	NA	31073	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.040000	0.621891	
mm_128070.1	chr15	27619181	27619381	-	1	NA	NA	NA	11412	NM_001013792	432940	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.005000	0.412935	
mm_105117.1	chr11	101119695	101119895	-	1	NA	NA	NA	29	NM_026501	67998	Mm.33881	NM_026501	ENSMUSG00000017802	Fam134c	1300010M03Rik|4933404C01Rik|AI551748	family with sequence similarity 134, member C	protein-coding	0.090000	0.691542	
mm_61987.1	chr7	91090729	91090929	+	1	NA	NA	NA	43	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.020000	0.437811	-34(CTATATATAGCC,+,0.00)
mm_70457.1	chr8	11812283	11812483	+	1	NA	NA	NA	-28138	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	0.010000	0.398010	
mm_132983.1	chr16	52147575	52147775	+	1	NA	NA	NA	116126	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.025000	0.437811	
mm_39300.1	chr5	5890886	5891086	+	1	NA	NA	NA	-141669	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.020000	0.512438	
mm_15271.1	chr2	155199517	155199717	+	1	NA	NA	NA	-36916	NR_111891	67068	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	0.000000	0.393035	
mm_141953.1	chr17	35111971	35112171	-	1	NA	NA	NA	3329	NM_148939	266614	Mm.104680	NM_148939	ENSMUSG00000043807	Ly6g5b	-	lymphocyte antigen 6 complex, locus G5B	protein-coding	0.015000	0.507463	
mm_163581.1	chr13	34046631	34046831	+	1	NA	NA	NA	9090	NM_026512	68021	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0.015000	0.437811	
mm_130481.1	chr15	98740290	98740490	-	1	NA	NA	NA	-12192	NM_024169	66120	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.025000	0.572139	
mm_43852.1	chr5	143369970	143370170	+	1	NA	NA	NA	-22	NM_001347529	170935	Mm.197460	NM_133355	ENSMUSG00000010825	Grid2ip	-	glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1	protein-coding	0.120000	0.761194	
mm_17706.1	chr2	32385352	32385552	-	1	NA	NA	NA	2287	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.020000	0.557214	
mm_153884.1	chr19	46946552	46946752	-	1	NA	NA	NA	15699	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.020000	0.427861	
mm_13949.1	chr2	121300269	121300469	+	1	NA	NA	NA	4915	NM_001173506	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.035000	0.597015	
mm_150333.1	chr19	34575103	34575303	+	1	NA	NA	NA	-8326	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.000000	0.303483	
mm_71473.1	chr8	46535112	46535312	+	1	NA	NA	NA	-16857	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.025000	0.502488	
mm_150860.1	chr19	45015140	45015340	+	1	NA	NA	NA	30	NM_001130525	226154	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.095000	0.716418	
mm_104245.1	chr11	88841384	88841584	-	1	NA	NA	NA	10019	NM_009648	11640	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	0.020000	0.527363	
mm_6337.1	chr1	71628381	71628581	-	1	NA	NA	NA	24753	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.015000	0.477612	
mm_81905.1	chr9	119983841	119984041	+	1	NA	NA	NA	717	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.150000	0.781095	
mm_115868.1	chr13	21468431	21468631	-	1	NA	NA	NA	-30	NM_025719	66707	Mm.116869	NM_025719	ENSMUSG00000059395	Nkapl	4921504I05Rik	NFKB activating protein-like	protein-coding	0.100000	0.646766	
mm_65662.1	chr7	28140087	28140287	-	1	NA	NA	NA	10721	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.050000	0.497512	
mm_147932.1	chr18	65970142	65970342	-	1	NA	NA	NA	-64	NM_145493	225644	Mm.192285	NM_145493	ENSMUSG00000024519	Cplx4	A930004D23Rik|CPXIV|Gm957	complexin 4	protein-coding	0.040000	0.517413	
mm_67507.1	chr7	80782214	80782414	-	1	NA	NA	NA	21017	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.035000	0.552239	
mm_154580.1	chrX	7572518	7572718	+	1	NA	NA	NA	-982	NR_029473	78185	Mm.160055	NR_029473	ENSMUSG00000039545	Ppp1r3fos	4930524L23Rik	protein phosphatase 1, regulatory subunit 3F, opposite strand	ncRNA	0.025000	0.532338	
mm_152248.1	chr19	8714304	8714504	-	1	NA	NA	NA	-507	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.010000	0.393035	
mm_32305.1	chr4	103142962	103143162	+	1	NA	NA	NA	23672	NM_001039081	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.005000	0.402985	
mm_119076.1	chr14	30880153	30880353	+	1	NA	NA	NA	996	NM_181390	66175	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0.015000	0.497512	
mm_51843.1	chr6	90302451	90302651	+	1	NA	NA	NA	1281	NM_177738	243535	Mm.233854	NM_177738	ENSMUSG00000049694	BC048671	-	cDNA sequence BC048671	protein-coding	0.000000	0.482587	
mm_145439.1	chr18	59062413	59062613	+	1	NA	NA	NA	132	NR_033765	225583	Mm.209711	NM_173759	ENSMUSG00000050875	A730017C20Rik	-	RIKEN cDNA A730017C20 gene	protein-coding	0.025000	0.472637	
mm_78131.1	chr9	20868567	20868767	+	1	NA	NA	NA	25	NM_175687	319278	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	0.125000	0.726368	
mm_46710.1	chr5	110342924	110343124	-	1	NA	NA	NA	11	NM_153400	231602	Mm.55948	NM_153400	ENSMUSG00000029503	P2rx2	P2X2a|P2x2	purinergic receptor P2X, ligand-gated ion channel, 2	protein-coding	0.065000	0.666667	
mm_123930.1	chr14	73366303	73366503	-	1	NA	NA	NA	18868	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.040000	0.492537	
mm_170404.1	chr18	64449910	64450110	-	1	NA	NA	NA	39056	NM_007998	14151	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0.035000	0.467662	
mm_165944.1	chr4	81981964	81982164	+	1	NA	NA	NA	-83316	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	0.005000	0.497512	
mm_104195.1	chr11	87979664	87979864	-	1	NA	NA	NA	6821	NM_001168472	68097	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	0.010000	0.487562	
mm_55426.1	chr6	65144834	65145034	-	1	NA	NA	NA	-204	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.015000	0.412935	
mm_29213.1	chr3	106790081	106790281	-	1	NA	NA	NA	-32	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.010000	0.457711	
mm_167910.1	chrX	85188247	85188447	+	1	NA	NA	NA	-61330	NM_028046	71996	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	0.000000	0.303483	
mm_15144.1	chr2	153974821	153975021	+	1	NA	NA	NA	-24	NM_001080811	545477	Mm.379973	NM_001080811	ENSMUSG00000078998	Bpifa6	EG545477|Gm5840|Splunc6	BPI fold containing family A, member 6	protein-coding	0.010000	0.507463	
mm_121050.1	chr14	84444923	84445123	+	1	NA	NA	NA	1460	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0.030000	0.517413	
mm_130593.1	chr15	99703700	99703900	-	1	NA	NA	NA	1513	NM_031842	83797	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.015000	0.532338	
mm_76270.1	chr8	84104652	84104852	-	1	NA	NA	NA	10	NM_172502	212123	Mm.260557	NM_172502	ENSMUSG00000037103	Dcaf15	6720484B16	DDB1 and CUL4 associated factor 15	protein-coding	0.100000	0.716418	
mm_75111.1	chr8	34154915	34155115	-	1	NA	NA	NA	452	NM_026432	67887	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	0.050000	0.522388	
mm_135977.1	chr16	75047697	75047897	-	1	NA	NA	NA	538264	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.005000	0.393035	
mm_77157.1	chr8	111687032	111687232	-	1	NA	NA	NA	2542	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.045000	0.616915	
mm_172616.1	chr8	19784633	19784833	+	1	NA	NA	NA	55157	NM_001039553	626415	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	ENSMUSG00000074453|OTTMUSG00000018948|TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	0.080000	0.641791	
mm_41451.1	chr5	90905369	90905569	+	1	NA	NA	NA	1570	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.005000	0.248756	-38(TCTTAAAAGGTC,+,0.00)
mm_68710.1	chr7	119890626	119890826	-	1	NA	NA	NA	4732	NM_173408	233805	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0.000000	0.437811	
mm_62011.1	chr7	91267271	91267471	+	1	NA	NA	NA	176585	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.263682	
mm_30636.1	chr4	8811242	8811442	+	1	NA	NA	NA	120936	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.045000	0.547264	
mm_17299.1	chr2	26294484	26294684	-	1	NA	NA	NA	-27	NM_177841	329366	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding	0.005000	0.527363	
mm_63695.1	chr7	130624518	130624718	+	1	NA	NA	NA	47134	NM_206856	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.015000	0.582090	
mm_165183.1	chr2	29788030	29788230	-	1	NA	NA	NA	-133	NM_178693	227683	Mm.245948	NM_178693	ENSMUSG00000026798	Coq4	A330041N06|D2Ertd97e	coenzyme Q4	protein-coding	0.025000	0.467662	
mm_119201.1	chr14	32811655	32811855	+	1	NA	NA	NA	-22207	NM_001164485	105511	Mm.32231	NM_001164485	ENSMUSG00000078127	Fam170b	4922501K12Rik|AI449756	family with sequence similarity 170, member B	protein-coding	0.005000	0.368159	
mm_60997.1	chr7	49290492	49290692	+	1	NA	NA	NA	44403	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.010000	0.437811	
mm_61414.1	chr7	73584163	73584363	+	1	NA	NA	NA	-25868	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.020000	0.432836	59(TACTATAAAAGA,-,0.00)
mm_132948.1	chr16	49911365	49911565	+	1	NA	NA	NA	55811	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.020000	0.457711	
mm_127695.1	chr15	102990454	102990654	+	1	NA	NA	NA	15	NM_010466	15426	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.105000	0.656716	
mm_143604.1	chr17	78417798	78417998	-	1	NA	NA	NA	254	NM_001285949	225020	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.125000	0.776119	
mm_111006.1	chr12	78908281	78908481	-	1	NA	NA	NA	-1443	NM_013738	27260	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	0.010000	0.457711	
mm_122234.1	chr14	33185423	33185623	-	1	NA	NA	NA	-457	NM_001146022	545030	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.005000	0.527363	
mm_50437.1	chr6	48860227	48860427	+	1	NA	NA	NA	18671	NM_001098271	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.035000	0.532338	
mm_100571.1	chr11	120762903	120763103	+	1	NA	NA	NA	21201	NM_009053	19719	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.060000	0.636816	
mm_55798.1	chr6	82760061	82760261	-	1	NA	NA	NA	14293	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.020000	0.527363	
mm_145877.1	chr18	65476220	65476420	+	1	NA	NA	NA	45323	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.452736	
mm_2643.1	chr1	125434678	125434878	+	1	NA	NA	NA	949	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.055000	0.567164	
mm_128202.1	chr15	35937186	35937386	-	1	NA	NA	NA	960	NM_053071	12864	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0.050000	0.467662	
mm_152704.1	chr19	17339613	17339813	-	1	NA	NA	NA	-208	NM_001136484	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.005000	0.482587	
mm_149198.1	chr19	9955040	9955240	+	1	NA	NA	NA	-25460	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.010000	0.527363	
mm_141460.1	chr17	30571732	30571932	-	1	NA	NA	NA	4455	NM_172618	224671	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0.015000	0.432836	
mm_41972.1	chr5	107403429	107403629	+	1	NA	NA	NA	16	NM_001001804	384214	Mm.489863	NM_001001804	ENSMUSG00000033805	Ephx4	Abhd7|Ephxrp|Gm1382	epoxide hydrolase 4	protein-coding	0.165000	0.820896	
mm_106884.1	chr12	8011955	8012155	+	1	NA	NA	NA	34378	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.402985	
mm_85452.1	chr9	104339035	104339235	-	1	NA	NA	NA	-1413	NM_207668	56318	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	0.020000	0.477612	
mm_38094.1	chr4	134245366	134245566	-	1	NA	NA	NA	125	NM_024215	68040	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	0.090000	0.636816	
mm_533.1	chr1	37897752	37897952	+	1	NA	NA	NA	7299	NM_027098	107734	Mm.26614	NM_027098	ENSMUSG00000026087	Mrpl30	2310001L22Rik|MRP-L28|Rpml28	mitochondrial ribosomal protein L30	protein-coding	0.010000	0.427861	35(ACTTTAAAACCC,+,0.00)
mm_72594.1	chr8	84414229	84414429	+	1	NA	NA	NA	-1035	NM_001252060	12286	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.105000	0.661692	
mm_121342.1	chr14	115868666	115868866	+	1	NA	NA	NA	-459214	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0.005000	0.318408	
mm_155560.1	chrX	75416543	75416743	+	1	NA	NA	NA	15	NM_001166459	210766	Mm.226957	NM_145956	ENSMUSG00000031201	Brcc3	C6.1A	BRCA1/BRCA2-containing complex, subunit 3	protein-coding	0.085000	0.686567	
mm_145483.1	chr18	60382514	60382714	+	1	NA	NA	NA	6585	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.000000	0.388060	-67(CCCTTTAGAGGA,+,0.00)
mm_13883.1	chr2	119972638	119972838	+	1	NA	NA	NA	39	NM_011941	26390	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	0.040000	0.562189	
mm_141580.1	chr17	32369322	32369522	-	1	NA	NA	NA	18395	NM_212438	22404	Mm.274948	NM_011717	ENSMUSG00000024050	Wiz	-	widely-interspaced zinc finger motifs	protein-coding	0.040000	0.587065	
mm_152391.1	chr19	10482806	10483006	-	1	NA	NA	NA	-9	NM_133689	67752	Mm.25939	NM_133689	ENSMUSG00000035179	Ppp1r32	4930579J09Rik|AU015816|IIIG9|IIIG9L|IIIG9S	protein phosphatase 1, regulatory subunit 32	protein-coding	0.010000	0.577114	
mm_42404.1	chr5	114989573	114989773	+	1	NA	NA	NA	-18611	NM_009327	21405	Mm.332607	NM_009327	ENSMUSG00000029556	Hnf1a	AI323641|HNF1|HNF1-alpha|HNF1[a]|Hnf-1|Hnf1alpha|LFB1|Tcf-1|Tcf1	HNF1 homeobox A	protein-coding	0.015000	0.258706	
mm_17120.1	chr2	24592987	24593187	-	1	NA	NA	NA	-117488	NM_011040	18510	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0.015000	0.452736	
mm_145286.1	chr18	53213814	53214014	+	1	NA	NA	NA	-31748	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.005000	0.572139	
mm_118675.1	chr14	22032109	22032309	+	1	NA	NA	NA	12497	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.000000	0.417910	
mm_138145.1	chr17	34204440	34204640	+	1	NA	NA	NA	61	NM_011530	21355	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.095000	0.631841	
mm_50870.1	chr6	55451993	55452193	+	1	NA	NA	NA	115	NM_007407	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	0.115000	0.706468	
mm_147053.1	chr18	34932496	34932696	-	1	NA	NA	NA	-593	NM_144866	225363	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.055000	0.512438	
mm_136093.1	chr16	85044008	85044208	-	1	NA	NA	NA	71897	NR_045889	100038614	Mm.441351	NR_045889		Gm10791	ENSMUSG00000074933	predicted gene 10791	ncRNA	0.015000	0.303483	
mm_107834.1	chr12	69258091	69258291	+	1	NA	NA	NA	16359	NM_178253	271005	Mm.180969	NM_178253	ENSMUSG00000051890	Klhdc1	-	kelch domain containing 1	protein-coding	0.030000	0.437811	-45(GTTTATAAACGC,+,0.00)
mm_92199.1	chr10	68136533	68136733	-	1	NA	NA	NA	142093	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.045000	0.606965	
mm_31786.1	chr4	63667493	63667693	+	1	NA	NA	NA	-45164	NM_029324	75524	Mm.38543	NM_029324	ENSMUSG00000058935	1700018C11Rik	bM230C2.3	RIKEN cDNA 1700018C11 gene	protein-coding	0.005000	0.497512	
mm_121640.1	chr14	8378761	8378961	-	1	NA	NA	NA	-98	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.010000	0.527363	
mm_92893.1	chr10	82955261	82955461	-	1	NA	NA	NA	-30136	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.075000	0.482587	
mm_167776.1	chr9	113741422	113741622	+	1	NA	NA	NA	49	NM_001114347	76499	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.170000	0.771144	
mm_128764.1	chr15	66135358	66135558	-	1	NA	NA	NA	150766	NM_152923	110862	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	0.000000	0.388060	
mm_62503.1	chr7	102041186	102041386	+	1	NA	NA	NA	-23131	NM_010531	16068	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.010000	0.313433	
mm_66358.1	chr7	43528191	43528391	-	1	NA	NA	NA	4880	NM_001111058	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.000000	0.492537	-13(GGTTTTAAATGC,-,0.00)
mm_90453.1	chr10	127706726	127706926	+	1	NA	NA	NA	1570	NM_001081219	432516	Mm.90450	NM_001081219	ENSMUSG00000025401	Myo1a	BBM-I|Myhl	myosin IA	protein-coding	0.020000	0.562189	
mm_78547.1	chr9	35364140	35364340	+	1	NA	NA	NA	83135	NR_040715	71133	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.015000	0.572139	
mm_116906.1	chr13	55447528	55447728	-	1	NA	NA	NA	2297	NM_001112711	26385	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	0.005000	0.567164	
mm_158114.1	chrX	102189252	102189452	-	1	NA	NA	NA	39	NM_009094	20102	Mm.66	NM_009094	ENSMUSG00000031320	Rps4x	Rps4|Rps4-1	ribosomal protein S4, X-linked	protein-coding	0.080000	0.626866	
mm_67870.1	chr7	99169725	99169925	-	1	NA	NA	NA	12888	NM_026384	67800	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	0.010000	0.532338	
mm_133139.1	chr16	68888229	68888429	+	1	NA	NA	NA	912052	NR_130991	78110	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	-	RIKEN cDNA 4930428D20 gene	ncRNA	0.015000	0.462687	
mm_154807.1	chrX	13623290	13623490	+	1	NA	NA	NA	-9379	NM_011823	23890	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	0.000000	0.288557	
mm_151346.1	chr19	55895476	55895676	+	1	NA	NA	NA	255	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.090000	0.716418	
mm_98245.1	chr11	88201349	88201549	+	1	NA	NA	NA	-2939	NM_024174	64656	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	0.000000	0.412935	
mm_78055.1	chr9	14858374	14858574	+	1	NA	NA	NA	-1736	NM_001310734	14608	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0.010000	0.537313	
mm_91182.1	chr10	20919631	20919831	-	1	NA	NA	NA	-32816	NM_026203	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.010000	0.462687	
mm_58399.1	chr7	3217735	3217935	+	1	NA	NA	NA	-791	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.030000	0.542289	-36(GACTATATAAGA,-,0.00)
mm_132589.1	chr16	38444191	38444391	+	1	NA	NA	NA	8398	NM_007414	11544	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.010000	0.472637	
mm_107629.1	chr12	51797836	51798036	+	1	NA	NA	NA	31600	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.005000	0.398010	
mm_135383.1	chr16	44140403	44140603	-	1	NA	NA	NA	694	NM_028108	72117	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	0.065000	0.587065	
mm_31891.1	chr4	82537546	82537746	+	1	NA	NA	NA	29657	NR_137202	102635783	Mm.41666	NR_137202		Gm11266	OTTMUSG00000000396	predicted gene 11266	ncRNA	0.045000	0.572139	
mm_150410.1	chr19	36926024	36926224	+	1	NA	NA	NA	45	NM_001080706	107182	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0.120000	0.721393	
mm_165591.1	chr3	34408010	34408210	+	1	NA	NA	NA	-152271	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA	0.000000	0.258706	
mm_138071.1	chr17	33947894	33948094	+	1	NA	NA	NA	3494	NM_019420	54218	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	0.015000	0.492537	
mm_74027.1	chr8	121730298	121730498	+	1	NA	NA	NA	-161	NM_020605	57340	Mm.306870	NM_020605	ENSMUSG00000025318	Jph3	JP-3|Jp3	junctophilin 3	protein-coding	0.145000	0.761194	
mm_76909.1	chr8	105851909	105852109	-	1	NA	NA	NA	-1	NM_177150	320394	Mm.334775	NM_177150	ENSMUSG00000036672	Cenpt	G630055P03Rik	centromere protein T	protein-coding	0.085000	0.611940	
mm_51752.1	chr6	87657654	87657854	+	1	NA	NA	NA	14414	NM_024251	72103	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding	0.000000	0.427861	
mm_16797.1	chr2	10102719	10102919	-	1	NA	NA	NA	22207	NM_025280	16588	Mm.35498	NM_025280	ENSMUSG00000037262	Kin	Kin17	Kin17 DNA and RNA binding protein	protein-coding	0.020000	0.522388	
mm_51863.1	chr6	90540667	90540867	+	1	NA	NA	NA	-10081	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.005000	0.582090	
mm_35298.1	chr4	22486654	22486854	-	1	NA	NA	NA	1612	NM_008899	18992	Mm.129387	NM_008899	ENSMUSG00000095139	Pou3f2	9430075J19Rik|A230098E07Rik|Brn-2|Brn2|OTF-7|Otf7|oct-7	POU domain, class 3, transcription factor 2	protein-coding	0.030000	0.512438	89(CCTTAAAAAAGG,+,0.00)
mm_152298.1	chr19	9083664	9083864	-	1	NA	NA	NA	4192	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.010000	0.472637	
mm_117685.1	chr13	94252955	94253155	-	1	NA	NA	NA	32226	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.020000	0.348259	
mm_147511.1	chr18	51262704	51262904	-	1	NA	NA	NA	144906	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0.000000	0.308458	
mm_168849.1	chr12	23969042	23969242	-	1	NA	NA	NA	128127	NM_001256489	66808	Mm.379124	NM_001256489	ENSMUSG00000073158	9030624G23Rik	-	RIKEN cDNA 9030624G23 gene	protein-coding	0.130000	0.771144	
mm_97074.1	chr11	72998981	72999181	+	1	NA	NA	NA	-64	NM_008771	18436	Mm.25722	NM_008771	ENSMUSG00000020787	P2rx1	AI323649|BB122383|P2x|Pdcd3|RP-2	purinergic receptor P2X, ligand-gated ion channel, 1	protein-coding	0.025000	0.597015	
mm_172320.1	chr7	106283972	106284172	+	1	NA	NA	NA	40456	NR_030720	668128	Mm.484022	NR_030720		Gm8989	EG668128|Gm21911	very large inducible GTPase 1 pseudogene	pseudo	0.000000	0.308458	
mm_61935.1	chr7	90168353	90168553	+	1	NA	NA	NA	38221	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.005000	0.368159	
mm_148106.1	chr18	74207612	74207812	-	1	NA	NA	NA	106	NM_001164355	66468	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	0.125000	0.666667	
mm_96876.1	chr11	70214878	70215078	+	1	NA	NA	NA	1068	NM_153081	216867	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0.060000	0.616915	
mm_56336.1	chr6	92706104	92706304	-	1	NA	NA	NA	-20	NM_001081146	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.125000	0.711443	
mm_111058.1	chr12	80110283	80110483	-	1	NA	NA	NA	2630	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.070000	0.676617	
mm_28240.1	chr3	88458961	88459161	-	1	NA	NA	NA	40	NM_001163490	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.050000	0.621891	
mm_55045.1	chr6	48990139	48990339	-	1	NA	NA	NA	3378	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.015000	0.567164	
mm_58879.1	chr7	16993796	16993996	+	1	NA	NA	NA	-692	NM_001101535	434130	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	ENSMUSG00000041117	coiled-coil domain containing 8	protein-coding	0.045000	0.646766	85(GCCTTTAAGCAC,+,0.00)
mm_95728.1	chr11	54626248	54626448	+	1	NA	NA	NA	30202	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.000000	0.363184	38(CCTTTTAGAGCA,+,0.00)
mm_40562.1	chr5	61806645	61806845	+	1	NA	NA	NA	-2098	NM_019468	14380	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	0.005000	0.313433	69(GTGTTTTTAAGC,-,0.00)
mm_106000.1	chr11	115699219	115699419	-	1	NA	NA	NA	215	NM_001313937	14784	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.020000	0.567164	
mm_63144.1	chr7	123214685	123214885	+	1	NA	NA	NA	-81	NM_146198	233836	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.005000	0.567164	
mm_144641.1	chr18	33007599	33007799	+	1	NA	NA	NA	68658	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.005000	0.338308	
mm_79225.1	chr9	49954797	49954997	+	1	NA	NA	NA	-155504	NM_001311065	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding	0.005000	0.497512	
mm_163260.1	chr11	112784802	112785002	+	1	NA	NA	NA	2692	NM_011448	20682	Mm.286407	NM_011448	ENSMUSG00000000567	Sox9	2010306G03Rik|AV220920|mKIAA4243	SRY (sex determining region Y)-box 9	protein-coding	0.080000	0.611940	
mm_115710.1	chr13	15777513	15777713	-	1	NA	NA	NA	25017	NR_045507	71071	Mm.380845	NR_045507		4933412O06Rik	-	RIKEN cDNA 4933412O06 gene	ncRNA	0.005000	0.383085	-35(ACCTATAAAAAG,-,0.00)
mm_47078.1	chr5	116633506	116633706	-	1	NA	NA	NA	-41789	NM_026886	68955	Mm.146779	NM_026886	ENSMUSG00000063919	Srrm4	1500001A10Rik|B230202K19Rik|bv|mKIAA1853|nSR100	serine/arginine repetitive matrix 4	protein-coding	0.020000	0.447761	
mm_33382.1	chr4	129572478	129572678	+	1	NA	NA	NA	1063	NM_001162433	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.020000	0.487562	
mm_168038.1	chrY	90742645	90742845	-	1	NA	NA	NA	12305	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.070000	0.631841	
mm_95514.1	chr11	52098691	52098891	+	1	NA	NA	NA	-33	NM_019411	19052	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.135000	0.741294	
mm_143743.1	chr17	81512838	81513038	-	1	NA	NA	NA	225449	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.020000	0.328358	-27(GAGTTTAAAAAG,-,0.00)
mm_156434.1	chrX	141979976	141980176	+	1	NA	NA	NA	216860	NM_001007576	245650	Mm.208511	NM_001007576	ENSMUSG00000042282	Gucy2f	A930002I06|GC-F|GC2	guanylate cyclase 2f	protein-coding	0.010000	0.472637	
mm_164971.1	chr19	7482964	7483164	-	1	NA	NA	NA	227	NM_001271486	20168	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0.100000	0.701493	
mm_156982.1	chrX	7237592	7237792	-	1	NA	NA	NA	82	NR_030495	723974		NR_030495	ENSMUSG00000070108	Mir500	Mirn500|mir-500|mmu-mir-500	microRNA 500	ncRNA	0.000000	0.547264	
mm_56251.1	chr6	90757410	90757610	-	1	NA	NA	NA	-40981	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.020000	0.621891	
mm_86148.1	chr9	117252104	117252304	-	1	NA	NA	NA	279	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.050000	0.527363	1(CCTTTACAAGCG,+,0.00)
mm_43508.1	chr5	136987563	136987763	+	1	NA	NA	NA	296	NM_027318	70103	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	0.080000	0.671642	
mm_149180.1	chr19	9606725	9606925	+	1	NA	NA	NA	-47577	NR_073559	619371	Mm.316894	NM_001030317		Stxbp3-ps	Munc18c(L)|Stxbp3-1|Stxbp3b	syntaxin-binding protein 3, pseudogene	pseudo	0.005000	0.338308	
mm_93752.1	chr10	120171220	120171420	-	1	NA	NA	NA	30217	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.030000	0.407960	
mm_151273.1	chr19	55219614	55219814	+	1	NA	NA	NA	21522	NM_001081076	73707	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.015000	0.462687	-36(GGCTTTAAAGAC,-,0.00)
mm_128165.1	chr15	34081260	34081460	-	1	NA	NA	NA	-1359	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.010000	0.363184	
mm_173258.1	chrX	94827651	94827851	+	1	NA	NA	NA	-29462	NR_003292	668171	Mm.426134	NR_003292		Zxda	4933406P09Rik|AW413531	zinc finger, X-linked, duplicated A	pseudo	0.015000	0.507463	
mm_103304.1	chr11	72607681	72607881	-	1	NA	NA	NA	520	NM_025985	67128	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	0.125000	0.791045	
mm_91777.1	chr10	52194955	52195155	-	1	NA	NA	NA	189	NM_011282	19886	Mm.236163	NM_011282	ENSMUSG00000019893	Ros1	Ros-1|c-ros	Ros1 proto-oncogene	protein-coding	0.005000	0.407960	-53(CTTTTTAAAGAG,+,0.00)
mm_173253.1	chrX	94541944	94542144	-	1	NA	NA	NA	30	NM_019791	94275	Mm.27578	NM_019791	ENSMUSG00000025151	Maged1	2810433C11Rik|5430405L04Rik|DXBwg1492e|Dlixin|Dlxin-1|Dlxin1|MAGE-D1|NRAGE|mFLJ00163	melanoma antigen, family D, 1	protein-coding	0.095000	0.621891	
mm_136626.1	chr17	5574828	5575028	+	1	NA	NA	NA	82328	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.010000	0.507463	
mm_12267.1	chr2	68968740	68968940	+	1	NA	NA	NA	107399	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.000000	0.318408	53(ACTTTTATGCAC,+,0.00)
mm_153680.1	chr19	44396532	44396732	-	1	NA	NA	NA	11077	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.005000	0.502488	
mm_27612.1	chr3	59210782	59210982	-	1	NA	NA	NA	0	NM_028808	74191	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.005000	0.388060	
mm_166315.1	chr5	110231053	110231253	+	1	NA	NA	NA	149	NM_027922	71782	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	0.150000	0.756219	
mm_37487.1	chr4	123607041	123607241	-	1	NA	NA	NA	-9279	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.000000	0.308458	
mm_86651.1	chr10	17723935	17724135	+	1	NA	NA	NA	807	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.070000	0.646766	
mm_84769.1	chr9	75611250	75611450	-	1	NA	NA	NA	-25	NM_016711	50876	Mm.291880	NM_016711	ENSMUSG00000032186	Tmod2	N-Tmod|NTMOD	tropomodulin 2	protein-coding	0.060000	0.631841	
mm_171575.1	chr4	147361910	147362110	+	1	NA	NA	NA	186144	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.005000	0.447761	-98(CATTTTATAGGC,+,0.00)
mm_172617.1	chr8	20005874	20006074	+	1	NA	NA	NA	276398	NM_001039553	626415	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	ENSMUSG00000074453|OTTMUSG00000018948|TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	0.005000	0.402985	
mm_75739.1	chr8	69716735	69716935	-	1	NA	NA	NA	67	NM_001039967	66869	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	0.095000	0.646766	
mm_36968.1	chr4	109440919	109441119	-	1	NA	NA	NA	25372	NM_001145948	230603	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.005000	0.373134	
mm_152576.1	chr19	11600579	11600779	-	1	NA	NA	NA	4125	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.000000	0.398010	
mm_135566.1	chr16	50192625	50192825	-	1	NA	NA	NA	-119873	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.005000	0.308458	
mm_119170.1	chr14	32099289	32099489	+	1	NA	NA	NA	13661	NM_145460	218885	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	0.010000	0.487562	
mm_138990.1	chr17	45523334	45523534	+	1	NA	NA	NA	0	NM_013688	21645	Mm.491193	NM_013688	ENSMUSG00000023949	Tcte1	D17Sil1|Tcte-1	t-complex-associated testis expressed 1	protein-coding	0.090000	0.636816	
mm_38272.1	chr4	136882189	136882389	-	1	NA	NA	NA	3888	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.010000	0.577114	
mm_9274.1	chr1	171634034	171634234	-	1	NA	NA	NA	7766	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.005000	0.447761	
mm_56706.1	chr6	115039094	115039294	-	1	NA	NA	NA	-1320	NM_026894	68971	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	0.030000	0.393035	-61(GGATTTTAAAAG,-,0.00),-60(GATTTTAAAAGA,-,0.00)
mm_154772.1	chrX	12652155	12652355	+	1	NA	NA	NA	372	NM_001101484	245347	Mm.327568	NM_001101484		Gm4984	AI428901|EG245347	predicted pseudogene 4984	protein-coding	0.055000	0.547264	-79(TCCTTTATGGCA,+,0.00)
mm_41113.1	chr5	87778855	87779055	+	1	NA	NA	NA	4505	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.000000	0.333333	
mm_100220.1	chr11	117077142	117077342	+	1	NA	NA	NA	-106	NR_105853	102465258		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.050000	0.606965	
mm_45612.1	chr5	75835522	75835722	-	1	NA	NA	NA	142806	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.035000	0.492537	76(CTCTTTTAAGGG,-,0.00),77(TCTTTTAAGGGG,+,0.00),78(CTTTTAAGGGGG,+,0.00)
mm_163870.1	chr14	19419056	19419256	+	1	NA	NA	NA	183431	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.015000	0.358209	
mm_75585.1	chr8	61549992	61550192	-	1	NA	NA	NA	41077	NM_001293774	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.105000	0.741294	
mm_173160.1	chrX	37194781	37194981	-	1	NA	NA	NA	-3643	NM_019443	54405	Mm.34869	NM_019443	ENSMUSG00000016427	Ndufa1	1810049F12Rik|MWFE	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1	protein-coding	0.035000	0.517413	
mm_84467.1	chr9	66592967	66593167	-	1	NA	NA	NA	48	NM_144937	235441	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.110000	0.691542	
mm_41827.1	chr5	104046912	104047112	+	1	NA	NA	NA	148	NM_028794	74167	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	0.140000	0.786070	
mm_40642.1	chr5	64924092	64924292	+	1	NA	NA	NA	8507	NM_030682	21897	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.010000	0.417910	
mm_85847.1	chr9	110645241	110645441	-	1	NA	NA	NA	8820	NM_183276	235627	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0.030000	0.557214	
mm_71853.1	chr8	68906052	68906252	+	1	NA	NA	NA	25597	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.318408	
mm_137844.1	chr17	31057609	31057809	+	1	NA	NA	NA	15	NM_009593	11307	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding	0.135000	0.756219	
mm_30758.1	chr4	15266093	15266293	+	1	NA	NA	NA	373	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.165000	0.815920	
mm_28656.1	chr3	95232074	95232274	-	1	NA	NA	NA	3231	NM_001038708	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.010000	0.487562	
mm_91723.1	chr10	44470615	44470815	-	1	NA	NA	NA	-11967	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.030000	0.517413	
mm_62525.1	chr7	102231495	102231695	+	1	NA	NA	NA	8567	NR_111937	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.005000	0.532338	
mm_135725.1	chr16	55821964	55822164	-	1	NA	NA	NA	74	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.120000	0.711443	
mm_156622.1	chrX	154350273	154350473	+	1	NA	NA	NA	-6981	NM_001256259	75071	Mm.159415	NM_001256259	ENSMUSG00000059663	4930524N10Rik	-	RIKEN cDNA 4930524N10 gene	protein-coding	0.005000	0.383085	
mm_123060.1	chr14	55663356	55663556	-	1	NA	NA	NA	-2948	NR_028316	67881	Mm.24601	NM_023397	ENSMUSG00000002329	Mdp1	1810034K20Rik|AI035604	magnesium-dependent phosphatase 1	protein-coding	0.015000	0.502488	
mm_145124.1	chr18	44381259	44381459	+	1	NA	NA	NA	859	NM_027490	70640	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0.015000	0.393035	
mm_157085.1	chrX	9436154	9436354	-	1	NA	NA	NA	33070	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.378109	
mm_82685.1	chr9	22239991	22240191	-	1	NA	NA	NA	14379	NM_001164624	235047	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	0.015000	0.472637	
mm_123730.1	chr14	70167941	70168141	-	1	NA	NA	NA	-8539	NM_001004155	268759	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	0.025000	0.606965	
mm_40997.1	chr5	77349277	77349477	+	1	NA	NA	NA	38893	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.010000	0.398010	
mm_124675.1	chr15	6424107	6424307	+	1	NA	NA	NA	-21126	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.010000	0.402985	
mm_160996.1	chr11	115026868	115027068	-	1	NA	NA	NA	-35	NM_001101656	100043123		NM_001101656	ENSMUSG00000069609	Cd300ld4	Gm11710|OTTMUSG00000003605	CD300 molecule like family member D4	protein-coding	0.010000	0.482587	
mm_48658.1	chr5	145875180	145875380	-	1	NA	NA	NA	4574	NM_007818	13112	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	0.005000	0.393035	
mm_47511.1	chr5	124075643	124075843	-	1	NA	NA	NA	20055	NM_019875	56325	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.035000	0.552239	
mm_113254.1	chr13	28016113	28016313	+	1	NA	NA	NA	-10	NM_011165	19110	Mm.18607	NM_011165	ENSMUSG00000005891	Prl4a1	AA409771|Ghd23|PLP-A|Prlpa	prolactin family 4, subfamily a, member 1	protein-coding	0.005000	0.467662	
mm_167939.1	chrX	115089697	115089897	+	1	NA	NA	NA	162808	NR_130989	78086		NR_130989	ENSMUSG00000085619	4930555B12Rik	-	RIKEN cDNA 4930555B12 gene	ncRNA	0.005000	0.363184	
mm_58650.1	chr7	6286479	6286679	+	1	NA	NA	NA	-1	NM_001024928	384763	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0.060000	0.711443	
mm_38458.1	chr4	140581685	140581885	-	1	NA	NA	NA	66971	NM_001112723	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.040000	0.611940	
mm_77801.1	chr9	3032272	3032472	+	1	NA	NA	NA	6371	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.353234	
mm_127447.1	chr15	101270553	101270753	+	1	NA	NA	NA	3807	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.015000	0.606965	
mm_83455.1	chr9	45245429	45245629	-	1	NA	NA	NA	21178	NR_106054	102466803		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.000000	0.487562	
mm_111810.1	chr12	105222667	105222867	-	1	NA	NA	NA	-30	NM_001289468	21432	Mm.18154	NM_009337	ENSMUSG00000041359	Tcl1	Tcl1a	T cell lymphoma breakpoint 1	protein-coding	0.050000	0.562189	
mm_70204.1	chr7	144738400	144738600	-	1	NA	NA	NA	92	NM_178642	101772	Mm.26700	NM_178642	ENSMUSG00000031075	Ano1	Tmem16a	anoctamin 1, calcium activated chloride channel	protein-coding	0.090000	0.691542	
mm_30909.1	chr4	32425134	32425334	+	1	NA	NA	NA	7799	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.030000	0.497512	
mm_104067.1	chr11	86585137	86585337	-	1	NA	NA	NA	-1079	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.407960	
mm_167849.1	chrX	7899099	7899299	+	1	NA	NA	NA	70	NM_001252529	54633	Mm.14616	NM_019478	ENSMUSG00000031157	Pqbp1	PQBP-1|Sfc2|npw38	polyglutamine binding protein 1	protein-coding	0.050000	0.532338	
mm_118977.1	chr14	28031377	28031577	+	1	NA	NA	NA	409070	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	0.020000	0.512438	
mm_56939.1	chr6	119925764	119925964	-	1	NA	NA	NA	23166	NM_001166381	19365	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.005000	0.427861	
mm_105538.1	chr11	106301434	106301634	-	1	NA	NA	NA	362	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.025000	0.592040	
mm_13764.1	chr2	118462499	118462699	+	1	NA	NA	NA	17097	NM_009273	20813	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	0.010000	0.442786	
mm_28867.1	chr3	97697037	97697237	-	1	NA	NA	NA	-6575	NR_106084	102466229		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	0.035000	0.547264	
mm_120036.1	chr14	56284816	56285016	+	1	NA	NA	NA	-22582	NM_013542	14939	Mm.14874	NM_013542	ENSMUSG00000015437	Gzmb	AI553453|CCP-1/C11|CCP1|Ctla-1|Ctla1|GZB	granzyme B	protein-coding	0.000000	0.467662	
mm_163380.1	chr12	49384238	49384438	+	1	NA	NA	NA	1331	NM_008241	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.090000	0.676617	
mm_171611.1	chr4	150237180	150237380	+	1	NA	NA	NA	-44	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.060000	0.597015	
mm_146006.1	chr18	69344417	69344617	+	1	NA	NA	NA	25	NM_013685	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.060000	0.557214	0(CTCTTTATAAGC,-,0.00),2(CTTTATAAGCCG,+,0.00)
mm_155461.1	chrX	73517192	73517392	+	1	NA	NA	NA	14206	NM_177236	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.000000	0.527363	
mm_80188.1	chr9	72393943	72394143	+	1	NA	NA	NA	-44486	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.015000	0.432836	
mm_163026.1	chr11	49712515	49712715	-	1	NA	NA	NA	107	NM_212484	104625	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0.185000	0.766169	
mm_83798.1	chr9	52679607	52679807	-	1	NA	NA	NA	73	NM_001286641	330941	Mm.335160	NM_177907	ENSMUSG00000078307	AI593442	E130102D23	expressed sequence AI593442	protein-coding	0.090000	0.706468	
mm_59876.1	chr7	30291614	30291814	+	1	NA	NA	NA	-39	NM_001081114	76686	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	0.070000	0.656716	
mm_9149.1	chr1	170913633	170913833	-	1	NA	NA	NA	-792	NM_001029984	435653	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0.020000	0.522388	
mm_103485.1	chr11	76509136	76509336	-	1	NA	NA	NA	183	NM_198018	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.045000	0.706468	
mm_104912.1	chr11	99696353	99696553	-	1	NA	NA	NA	-30493	NM_026834	68768	Mm.416844	NM_026834	ENSMUSG00000075566	Krtap4-6	1110054P19Rik	keratin associated protein 4-6	protein-coding	0.015000	0.507463	-34(GGGTATAAAAGC,-,0.00)
mm_14040.1	chr2	122234700	122234900	+	1	NA	NA	NA	-39	NM_146126	20322	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	0.090000	0.716418	
mm_102747.1	chr11	67255359	67255559	-	1	NA	NA	NA	17647	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.045000	0.542289	
mm_127524.1	chr15	102073797	102073997	+	1	NA	NA	NA	124	NM_145625	75705	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0.110000	0.671642	
mm_142674.1	chr17	47730565	47730765	-	1	NA	NA	NA	3823	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.035000	0.592040	
mm_35695.1	chr4	44143389	44143589	-	1	NA	NA	NA	21596	NR_040414	623796	Mm.490409	NR_040414	ENSMUSG00000084274	Gm12504	OTTMUSG00000007209	prothymosin alpha pseudogene	pseudo	0.020000	0.517413	
mm_122617.1	chr14	51145303	51145503	-	1	NA	NA	NA	1364	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.010000	0.482587	
mm_116097.1	chr13	28817515	28817715	-	1	NA	NA	NA	67807	NR_045054	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.005000	0.447761	
mm_15310.1	chr2	155517997	155518197	+	1	NA	NA	NA	54	NM_019811	60525	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	0.120000	0.721393	
mm_156774.1	chrX	160796063	160796263	+	1	NA	NA	NA	28150	NM_011302	20147	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	0.010000	0.537313	-97(GCCTAGTTAAGG,-,0.00)
mm_160433.1	chr8	92960020	92960220	+	1	NA	NA	NA	-927	NM_009209	20538	Mm.57040	NM_009209	ENSMUSG00000055368	Slc6a2	NE-T|NET|Slc6a5	solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	protein-coding	0.020000	0.522388	
mm_142588.1	chr17	46729065	46729265	-	1	NA	NA	NA	0	NM_010321	14711	Mm.29395	NM_010321	ENSMUSG00000002769	Gnmt	-	glycine N-methyltransferase	protein-coding	0.070000	0.676617	
mm_2506.1	chr1	106211402	106211602	+	1	NA	NA	NA	39633	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.005000	0.442786	
mm_111818.1	chr12	105685173	105685373	-	1	NA	NA	NA	-32	NM_029654	76559	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	0.115000	0.626866	
mm_71519.1	chr8	46846657	46846857	+	1	NA	NA	NA	107012	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.020000	0.557214	
mm_49568.1	chr6	30640358	30640558	+	1	NA	NA	NA	1240	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.045000	0.616915	
mm_19452.1	chr2	92024083	92024283	-	1	NA	NA	NA	-13	NM_011957	26427	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.125000	0.786070	
mm_25405.1	chr3	107278903	107279103	+	1	NA	NA	NA	145	NM_026774	68576	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	0.105000	0.626866	
mm_35322.1	chr4	25800196	25800396	-	1	NA	NA	NA	-293	NM_010243	14348	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.040000	0.577114	
mm_140057.1	chr17	74636040	74636240	+	1	NA	NA	NA	-81610	NM_152817	74196	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0.005000	0.417910	
mm_142881.1	chr17	51826519	51826719	-	1	NA	NA	NA	-31	NM_001163631	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.015000	0.577114	
mm_18578.1	chr2	66124686	66124886	-	1	NA	NA	NA	7	NM_015736	14425	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.155000	0.781095	
mm_90013.1	chr10	115314989	115315189	+	1	NA	NA	NA	502	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.065000	0.671642	
mm_54412.1	chr6	32588104	32588304	-	1	NA	NA	NA	-12	NM_175750	243743	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0.085000	0.721393	
mm_31260.1	chr4	45184641	45184841	+	1	NA	NA	NA	-165	NM_001081172	666060	Mm.24783	NM_001081172	ENSMUSG00000035615	Frmpd1	BC031840|mKIAA0967	FERM and PDZ domain containing 1	protein-coding	0.140000	0.830846	
mm_22793.1	chr3	22211226	22211426	+	1	NA	NA	NA	-40044	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0.005000	0.318408	
mm_36359.1	chr4	76104262	76104462	-	1	NA	NA	NA	-826076	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.000000	0.293532	
mm_36160.1	chr4	59914949	59915149	-	1	NA	NA	NA	7	NM_021053	30936	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0.025000	0.577114	
mm_1995.1	chr1	87126660	87126860	+	1	NA	NA	NA	1752	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.020000	0.462687	
mm_149594.1	chr19	16158654	16158854	+	1	NA	NA	NA	-5344	NR_033228	595139	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0.005000	0.477612	45(TTCTTTAAAGAG,-,0.00),47(CTTTAAAGAGAG,+,0.00)
mm_124062.1	chr14	78307941	78308141	-	1	NA	NA	NA	2	NM_011613	21943	Mm.249221	NM_011613	ENSMUSG00000022015	Tnfsf11	Ly109l|ODF|OPGL|RANKL|Trance	tumor necrosis factor (ligand) superfamily, member 11	protein-coding	0.055000	0.671642	
mm_106513.1	chr11	120530487	120530687	-	1	NA	NA	NA	-140	NM_008101	14527	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.090000	0.706468	
mm_140636.1	chr17	12652547	12652747	-	1	NA	NA	NA	23191	NM_009202	20517	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.035000	0.562189	
mm_51324.1	chr6	72347286	72347486	+	1	NA	NA	NA	69	NM_026696	68364	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	0.115000	0.656716	
mm_144166.1	chr18	6332498	6332698	+	1	NA	NA	NA	-91074	NM_008448	16573	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.035000	0.477612	
mm_26798.1	chr3	9853028	9853228	-	1	NA	NA	NA	-19449	NM_001195031	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.000000	0.512438	
mm_155015.1	chrX	41673750	41673950	+	1	NA	NA	NA	238051	NM_001033422	331401	Mm.259498	NM_001033422	ENSMUSG00000037475	Thoc2	6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2	THO complex 2	protein-coding	0.005000	0.313433	
mm_134268.1	chr16	13902925	13903125	-	1	NA	NA	NA	120	NM_001039533	94184	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0.130000	0.761194	
mm_102077.1	chr11	52274769	52274969	-	1	NA	NA	NA	7726	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.050000	0.656716	
mm_104210.1	chr11	88340348	88340548	-	1	NA	NA	NA	-12325	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	0.005000	0.442786	
mm_103152.1	chr11	70358311	70358511	-	1	NA	NA	NA	-6380	NM_009660	11687	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	0.015000	0.442786	
mm_162445.1	chr1	119211029	119211229	+	1	NA	NA	NA	-157510	NM_001081125	14633	Mm.273292	NM_001081125	ENSMUSG00000048402	Gli2	-	GLI-Kruppel family member GLI2	protein-coding	0.010000	0.517413	
mm_76389.1	chr8	84842874	84843074	-	1	NA	NA	NA	-2309	NM_009010	19358	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.015000	0.502488	
mm_40080.1	chr5	34369840	34370040	+	1	NA	NA	NA	7	NM_001243123	231128	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	0.115000	0.731343	
mm_163149.1	chr11	83175063	83175263	+	1	NA	NA	NA	-23	NM_011410	20558	Mm.38192	NM_011410	ENSMUSG00000000204	Slfn4	AI450778	schlafen 4	protein-coding	0.035000	0.437811	
mm_78004.1	chr9	10446445	10446645	+	1	NA	NA	NA	458181	NM_001033359	244682	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0.005000	0.527363	
mm_132777.1	chr16	44779343	44779543	+	1	NA	NA	NA	13707	NM_021325	57781	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.010000	0.432836	
mm_5626.1	chr1	40393217	40393417	-	1	NA	NA	NA	-36253	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.020000	0.457711	
mm_120742.1	chr14	73178217	73178417	+	1	NA	NA	NA	28534	NR_030459	751541		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.035000	0.527363	
mm_116368.1	chr13	40730950	40731150	-	1	NA	NA	NA	-593	NM_001122948	21418	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.060000	0.691542	
mm_134037.1	chr16	5049786	5049986	-	1	NA	NA	NA	24	NM_001079814	74022	Mm.21652	NM_028720	ENSMUSG00000022536	Glyr1	2810419J22Rik|3930401K13Rik|AW545332|Npac	glyoxylate reductase 1 homolog (Arabidopsis)	protein-coding	0.125000	0.691542	
mm_48251.1	chr5	137787527	137787727	-	1	NA	NA	NA	-175	NM_001005426	381678	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	0.045000	0.462687	
mm_48309.1	chr5	138619625	138619825	-	1	NA	NA	NA	18	NM_001163797	24135	Mm.27575	NM_013844	ENSMUSG00000058291	Zfp68	KRAB3|KRAZ2|Zfp70|mszf22|mszf49	zinc finger protein 68	protein-coding	0.055000	0.626866	
mm_36592.1	chr4	88438817	88439017	-	1	NA	NA	NA	9	NM_025760	66775	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.035000	0.646766	
mm_162132.1	chrX	73149308	73149508	-	1	NA	NA	NA	42	NM_001025384	574405	Mm.336093	NM_001025384	ENSMUSG00000071745	DXBay18	-	DNA segment, Chr X, Baylor 18	protein-coding	0.020000	0.537313	
mm_42361.1	chr5	114922021	114922221	+	1	NA	NA	NA	-1119	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.020000	0.522388	
mm_107902.1	chr12	70885738	70885938	+	1	NA	NA	NA	-52019	NM_019785	56444	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0.030000	0.572139	
mm_151494.1	chr19	58681652	58681852	+	1	NA	NA	NA	11387	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.005000	0.412935	23(TAGTATTAAAGC,-,0.00)
mm_130404.1	chr15	97976587	97976787	-	1	NA	NA	NA	12458	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.025000	0.557214	
mm_103480.1	chr11	76494892	76495092	-	1	NA	NA	NA	-497	NM_001346670	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.075000	0.661692	
mm_168745.1	chr12	115372351	115372551	-	1	NA	NA	NA	323343	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.000000	0.437811	
mm_15986.1	chr2	166905963	166906163	+	1	NA	NA	NA	-33	NM_023565	110750	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0.085000	0.666667	
mm_150212.1	chr19	32820021	32820221	+	1	NA	NA	NA	62544	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.000000	0.293532	
mm_51565.1	chr6	83575821	83576021	+	1	NA	NA	NA	-3417	NM_024239	70527	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0.010000	0.482587	
mm_153439.1	chr19	40994068	40994268	-	1	NA	NA	NA	367	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.030000	0.572139	
mm_28898.1	chr3	98032257	98032457	-	1	NA	NA	NA	18819	NM_010928	18129	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.005000	0.412935	
mm_48811.1	chr5	148995089	148995289	-	1	NA	NA	NA	25	NR_102383	319982	Mm.33303	NR_102383	ENSMUSG00000106951	5930430L01Rik	-	RIKEN cDNA 5930430L01 gene	ncRNA	0.045000	0.537313	
mm_20588.1	chr2	131163952	131164152	-	1	NA	NA	NA	-3971	NM_001311138	67326	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	0.030000	0.537313	
mm_14443.1	chr2	130932997	130933197	+	1	NA	NA	NA	26602	NM_009730	11990	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	0.030000	0.527363	
mm_20589.1	chr2	131163982	131164182	-	1	NA	NA	NA	-4001	NM_001311138	67326	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	0.030000	0.537313	
mm_23803.1	chr3	79884484	79884684	+	1	NA	NA	NA	-1346	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.020000	0.507463	
mm_86134.1	chr9	116612437	116612637	-	1	NA	NA	NA	-437174	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.015000	0.417910	
mm_25817.1	chr3	127791282	127791482	+	1	NA	NA	NA	1469	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.035000	0.537313	
mm_65280.1	chr7	24372378	24372578	-	1	NA	NA	NA	2215	NM_008433	16534	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0.040000	0.656716	
mm_150817.1	chr19	44403157	44403357	+	1	NA	NA	NA	4452	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.030000	0.537313	
mm_107541.1	chr12	40602190	40602390	+	1	NA	NA	NA	156237	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.000000	0.437811	
mm_93814.1	chr10	121410759	121410959	-	1	NA	NA	NA	45769	NM_029364	75612	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.035000	0.467662	
mm_50521.1	chr6	49043287	49043487	+	1	NA	NA	NA	6869	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.010000	0.388060	66(GGCCATTAGAGG,-,0.00)
mm_36703.1	chr4	96786655	96786855	-	1	NA	NA	NA	-1595	NM_001081284	620779	Mm.439625	NM_001081284	ENSMUSG00000078639	Gm12695	OTTMUSG00000008003	predicted gene 12695	protein-coding	0.020000	0.552239	-11(CTTTTTAGACTG,+,0.00)
mm_114742.1	chr13	83740095	83740295	+	1	NA	NA	NA	1381	NR_029545	723967		NR_029545	ENSMUSG00000065424	Mir9-2	Mirn9-2|mir-9-2|mmu-mir-9-2	microRNA 9-2	ncRNA	0.005000	0.412935	-88(CACCATTTAAGG,-,0.00),-86(CCATTTAAGGAA,+,0.00)
mm_65484.1	chr7	25655749	25655949	-	1	NA	NA	NA	2912	NM_007533	12039	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	0.005000	0.462687	
mm_8538.1	chr1	155059453	155059653	-	1	NA	NA	NA	40083	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.010000	0.552239	
mm_156984.1	chrX	7319122	7319322	-	1	NA	NA	NA	136	NM_001243762	12728	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	0.110000	0.691542	
mm_56095.1	chr6	87388754	87388954	-	1	NA	NA	NA	81	NM_026860	68888	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	0.025000	0.412935	-35(GTCTATATAAAC,-,0.00)
mm_150552.1	chr19	39324874	39325074	+	1	NA	NA	NA	37889	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.020000	0.512438	
mm_143830.1	chr17	84049933	84050133	-	1	NA	NA	NA	-28627	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.005000	0.412935	
mm_73895.1	chr8	119424371	119424571	+	1	NA	NA	NA	-12691	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.025000	0.522388	-98(TGCTATTAAAGG,-,0.00)
mm_141568.1	chr17	32284049	32284249	-	1	NA	NA	NA	-16	NM_020508	57261	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0.135000	0.771144	
mm_105382.1	chr11	103335231	103335431	-	1	NA	NA	NA	9371	NM_133715	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.025000	0.512438	
mm_144702.1	chr18	34862972	34863172	+	1	NA	NA	NA	1865	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.040000	0.572139	-42(CACTATTAAAGC,-,0.00)
mm_126399.1	chr15	80233956	80234156	+	1	NA	NA	NA	-24	NM_178719	239555	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.120000	0.716418	
mm_16636.1	chr2	5895267	5895467	-	1	NA	NA	NA	-14	NM_021305	57743	Mm.21435	NM_021305	ENSMUSG00000025816	Sec61a2	-	Sec61, alpha subunit 2 (S. cerevisiae)	protein-coding	0.105000	0.706468	
mm_92914.1	chr10	83637352	83637552	-	1	NA	NA	NA	11212	NM_145220	216190	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.025000	0.567164	
mm_5387.1	chr1	31017498	31017698	-	1	NA	NA	NA	-67843	NM_011200	19243	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	0.010000	0.492537	
mm_25420.1	chr3	107853045	107853245	+	1	NA	NA	NA	-24085	NM_133867	99662	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0.015000	0.592040	
mm_32658.1	chr4	115089057	115089257	+	1	NA	NA	NA	449	NM_001164557	67182	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	0.020000	0.597015	
mm_10474.1	chr2	14341791	14341991	+	1	NA	NA	NA	-46507	NM_001012305	277468	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0.040000	0.547264	83(TTATTTAAAAGC,-,0.00)
mm_168396.1	chr11	29030730	29030930	-	1	NA	NA	NA	-99921	NM_027869	71701	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	0.040000	0.517413	
mm_127848.1	chr15	7398241	7398441	-	1	NA	NA	NA	49	NM_001289496	268780	Mm.203208	NM_178748	ENSMUSG00000042961	Egflam	5930412K08|AU040377	EGF-like, fibronectin type III and laminin G domains	protein-coding	0.085000	0.656716	38(GCCCCGAAAAGC,-,0.00)
mm_115526.1	chr13	5864240	5864440	-	1	NA	NA	NA	2851	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.010000	0.482587	
mm_93778.1	chr10	120476216	120476416	-	1	NA	NA	NA	153	NM_001347170	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0.060000	0.656716	
mm_126291.1	chr15	79347473	79347673	+	1	NA	NA	NA	53	NM_010755	17133	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.100000	0.616915	
mm_44879.1	chr5	34636899	34637099	-	1	NA	NA	NA	115	NM_026660	68294	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	0.060000	0.611940	
mm_82606.1	chr9	21412144	21412344	-	1	NA	NA	NA	407	NM_021888	60507	Mm.436579	NM_021888	ENSMUSG00000002825	Qtrt1	2610028E17Rik|Tgt	queuine tRNA-ribosyltransferase 1	protein-coding	0.060000	0.616915	
mm_62477.1	chr7	101871427	101871627	+	1	NA	NA	NA	-739	NM_001252552	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.000000	0.497512	
mm_124068.1	chr14	78561826	78562026	-	1	NA	NA	NA	-25066	NM_001164503	219181	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	0.035000	0.457711	
mm_47193.1	chr5	120771122	120771322	-	1	NA	NA	NA	6437	NM_145226	246727	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	0.030000	0.641791	
mm_37179.1	chr4	117252144	117252344	-	1	NA	NA	NA	-96	NM_029589	68777	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	0.070000	0.696517	
mm_91053.1	chr10	18800338	18800538	-	1	NA	NA	NA	-13645	NM_177706	237300	Mm.444821	NM_177706	ENSMUSG00000044624	Gm4922	4933423E17|EG237300	predicted gene 4922	protein-coding	0.015000	0.427861	
mm_168719.1	chr12	109014164	109014364	-	1	NA	NA	NA	53953	NM_001163175	380785	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0.030000	0.477612	
mm_156921.1	chrX	169122227	169122427	+	1	NA	NA	NA	9449	NM_001287530	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.000000	0.373134	
mm_52881.1	chr6	122513496	122513696	+	1	NA	NA	NA	12	NM_001347434	50530	Mm.41931	NM_015776	ENSMUSG00000030116	Mfap5	MAGP-2|MFAP-5	microfibrillar associated protein 5	protein-coding	0.010000	0.527363	
mm_46433.1	chr5	104460242	104460442	-	1	NA	NA	NA	885	NM_008861	18764	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	0.085000	0.587065	
mm_104809.1	chr11	98809991	98810191	-	1	NA	NA	NA	-2	NR_033551	100037262	Mm.442062	NR_033551	ENSMUSG00000075576	Gm12359	OTTMUSG00000006457	predicted gene 12359	ncRNA	0.105000	0.716418	-87(CCCTCTAAGAGG,-,0.00)
mm_88260.1	chr10	73821844	73822044	+	1	NA	NA	NA	77	NM_001142735	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0.040000	0.547264	
mm_15415.1	chr2	156839927	156840127	+	1	NA	NA	NA	20	NM_173396	228839	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0.105000	0.731343	
mm_144624.1	chr18	32938779	32938979	+	1	NA	NA	NA	-162	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.050000	0.587065	
mm_129677.1	chr15	81399524	81399724	-	1	NA	NA	NA	70	NM_133726	70356	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	0.085000	0.671642	
mm_40161.1	chr5	35587963	35588163	+	1	NA	NA	NA	700	NR_045807	74364	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	0.035000	0.582090	
mm_71859.1	chr8	68906405	68906605	+	1	NA	NA	NA	25950	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.015000	0.378109	
mm_95698.1	chr11	54370529	54370729	+	1	NA	NA	NA	-23	NM_029105	74847	Mm.486538	NM_029105	ENSMUSG00000020332	Meikin	4930404A10Rik	meiotic kinetochore factor	protein-coding	0.040000	0.601990	
mm_158733.1	chrX	164021820	164022020	-	1	NA	NA	NA	6090	NM_181315	56078	Mm.180953	NM_181315	ENSMUSG00000031373	Car5b	7330410H16Rik|CAVB|Ca5b|CarVb|D730005F19Rik	carbonic anhydrase 5b, mitochondrial	protein-coding	0.005000	0.348259	
mm_83557.1	chr9	46242703	46242903	-	1	NA	NA	NA	1959	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.060000	0.601990	
mm_28390.1	chr3	90018361	90018561	-	1	NA	NA	NA	-7251	NR_106129	102465771		NR_106129	ENSMUSG00000098397	Mir7669	Gm27996|mmu-mir-7669	microRNA 7669	ncRNA	0.010000	0.368159	
mm_25637.1	chr3	120595529	120595729	+	1	NA	NA	NA	291103	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA	0.020000	0.512438	
mm_137031.1	chr17	17889852	17890052	+	1	NA	NA	NA	2128	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.010000	0.378109	
mm_68756.1	chr7	121074414	121074614	-	1	NA	NA	NA	16	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.030000	0.487562	
mm_42205.1	chr5	112343003	112343203	+	1	NA	NA	NA	8	NM_138646	192232	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	Hermansky-Pudlak syndrome 4	protein-coding	0.150000	0.746269	
mm_25586.1	chr3	116885874	116886074	+	1	NA	NA	NA	24294	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.000000	0.358209	
mm_50429.1	chr6	48843882	48844082	+	1	NA	NA	NA	2326	NM_001098271	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.020000	0.492537	
mm_26863.1	chr3	15332192	15332392	-	1	NA	NA	NA	10	NM_001076679	751864	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0.015000	0.417910	
mm_85049.1	chr9	89802645	89802845	-	1	NA	NA	NA	-417	NR_029570	387179		NR_029570	ENSMUSG00000065596	Mir184	Mirn184|mir-184|mmu-mir-184	microRNA 184	ncRNA	0.000000	0.537313	
mm_125533.1	chr15	57985784	57985984	+	1	NA	NA	NA	-19	NM_173862	239463	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.010000	0.562189	
mm_54207.1	chr6	25689200	25689400	-	1	NA	NA	NA	680	NM_010338	14763	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	0.030000	0.517413	
mm_102683.1	chr11	65269851	65270051	-	1	NA	NA	NA	38	NM_145136	214384	Mm.32257	NM_145136	ENSMUSG00000020542	Myocd	BSAC2A|Srfcp	myocardin	protein-coding	0.065000	0.616915	-74(CTTCATAAAGGC,+,0.00)
mm_85283.1	chr9	99692476	99692676	-	1	NA	NA	NA	17487	NM_019815	56492	Mm.386784	NM_019815	ENSMUSG00000032473	Cldn18	-	claudin 18	protein-coding	0.010000	0.447761	
mm_116292.1	chr13	35906244	35906444	-	1	NA	NA	NA	3	NM_145938	208366	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	0.080000	0.666667	
mm_146819.1	chr18	21116769	21116969	-	1	NA	NA	NA	44525	NM_008586	17288	Mm.2682	NM_008586	ENSMUSG00000024313	Mep1b	Mep-1b	meprin 1 beta	protein-coding	0.010000	0.507463	
mm_167950.1	chrX	139782396	139782596	-	1	NA	NA	NA	-143	NM_001037915	622473	Mm.391312	NM_001037915	ENSMUSG00000072945	Ripply1	-	ripply transcriptional repressor 1	protein-coding	0.000000	0.502488	
mm_129816.1	chr15	83004878	83005078	-	1	NA	NA	NA	18160	NM_028728	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.010000	0.407960	
mm_134580.1	chr16	20405496	20405696	-	1	NA	NA	NA	20798	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.010000	0.457711	
mm_15132.1	chr2	153924961	153925161	+	1	NA	NA	NA	6831	NM_194357	378700	Mm.55392	NM_194357	ENSMUSG00000068008	Bpifb3	Lplunc3|Rya3	BPI fold containing family B, member 3	protein-coding	0.000000	0.552239	
mm_157309.1	chrX	20931427	20931627	-	1	NA	NA	NA	28	NM_008823	18636	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	0.000000	0.522388	
mm_121409.1	chr14	119372838	119373038	+	1	NA	NA	NA	234673	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.000000	0.338308	
mm_24660.1	chr3	94484230	94484430	+	1	NA	NA	NA	1608	NR_110353	78784	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.050000	0.621891	
mm_33821.1	chr4	135433918	135434118	+	1	NA	NA	NA	-213	NM_022980	53902	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	0.055000	0.601990	
mm_116634.1	chr13	48968384	48968584	-	1	NA	NA	NA	372	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.150000	0.771144	
mm_154373.1	chrM	10505	10705	+	1	NA	NA	NA	NA	NA									0.020000	0.338308	
mm_66463.1	chr7	44901483	44901683	-	1	NA	NA	NA	5504	NM_027376	70300	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0.060000	0.616915	
mm_77070.1	chr8	110039240	110039440	-	1	NA	NA	NA	-6	NM_011998	26887	Mm.89207	NM_011998	ENSMUSG00000035930	Chst4	GST-3|Gn6st-2|HEC-GlcNAc6ST	carbohydrate (chondroitin 6/keratan) sulfotransferase 4	protein-coding	0.015000	0.527363	
mm_12681.1	chr2	75832368	75832568	+	1	NA	NA	NA	291	NM_172666	228061	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.115000	0.726368	
mm_25465.1	chr3	108591406	108591606	+	1	NA	NA	NA	228	NM_181400	99512	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	0.125000	0.701493	
mm_119240.1	chr14	33471474	33471674	+	1	NA	NA	NA	-24416	NM_016700	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.010000	0.542289	
mm_145547.1	chr18	60808843	60809043	+	1	NA	NA	NA	-3133	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.020000	0.557214	
mm_5780.1	chr1	51572701	51572901	-	1	NA	NA	NA	-94402	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.005000	0.477612	
mm_138136.1	chr17	34197622	34197822	+	1	NA	NA	NA	-473	NM_010724	16913	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	0.055000	0.582090	
mm_127923.1	chr15	10229192	10229392	-	1	NA	NA	NA	5386	NM_001253781	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.010000	0.407960	
mm_46609.1	chr5	107967698	107967898	-	1	NA	NA	NA	19279	NM_026062	67266	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0.005000	0.358209	
mm_89256.1	chr10	87859197	87859397	+	1	NA	NA	NA	245	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.015000	0.417910	
mm_75716.1	chr8	68906829	68907029	-	1	NA	NA	NA	26374	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.000000	0.313433	
mm_25665.1	chr3	121734572	121734772	+	1	NA	NA	NA	11135	NM_010171	14066	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0.020000	0.383085	-28(TTTTATAAAGCG,+,0.00)
mm_159282.1	chr2	167631883	167632083	-	1	NA	NA	NA	22	NM_001311146	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.125000	0.726368	
mm_136702.1	chr17	7645199	7645399	+	1	NA	NA	NA	159675	NM_001081416	68655	Mm.379161	NM_001081416	ENSMUSG00000071984	Fndc1	1110027O12Rik|1110051A18Rik|mKIAA1866	fibronectin type III domain containing 1	protein-coding	0.015000	0.472637	
mm_110495.1	chr12	54179421	54179621	-	1	NA	NA	NA	24353	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	0.040000	0.522388	
mm_20013.1	chr2	119229820	119230020	-	1	NA	NA	NA	-55	NM_001290796	72112	Mm.46317	NM_028104	ENSMUSG00000027317	Ppp1r14d	2010107K19Rik|GBPI-1|Ppp1r14	protein phosphatase 1, regulatory (inhibitor) subunit 14D	protein-coding	0.005000	0.552239	
mm_12687.1	chr2	75927334	75927534	+	1	NA	NA	NA	11028	NM_028235	72421	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	0.015000	0.293532	-64(TCCTTTAAAAGG,-,0.00),-63(CCTTTAAAAGGA,+,0.00),-62(CTTTAAAAGGAC,+,0.00),2(CCTTTTATATCT,+,0.00)
mm_20016.1	chr2	119277888	119278088	-	1	NA	NA	NA	-6762	NM_145530	228543	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	0.105000	0.641791	
mm_97208.1	chr11	75614946	75615146	+	1	NA	NA	NA	-14815	NR_110477	654359	Mm.439961	NR_110477		Gm12338	OTTMUSG00000006216	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.000000	0.348259	-95(GCTTCTTAAAGG,-,0.00)
mm_138923.1	chr17	43667400	43667600	+	1	NA	NA	NA	128	NM_018887	56050	Mm.17991	NM_018887	ENSMUSG00000023963	Cyp39a1	mCYP39A1	cytochrome P450, family 39, subfamily a, polypeptide 1	protein-coding	0.045000	0.482587	-10(TTGTTTAAAAAG,-,0.00)
mm_127332.1	chr15	100443204	100443404	+	1	NA	NA	NA	20111	NR_040351	432982	Mm.234608	NM_001034883	ENSMUSG00000087444	Gm5475	EG432982	predicted gene 5475	ncRNA	0.020000	0.512438	
mm_80450.1	chr9	77979786	77979986	+	1	NA	NA	NA	62521	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.030000	0.522388	
mm_161026.1	chr12	3807128	3807328	+	1	NA	NA	NA	68	NM_001271753	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.170000	0.791045	
mm_67407.1	chr7	80066158	80066358	-	1	NA	NA	NA	8999	NR_045695	100859962	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.015000	0.462687	
mm_65323.1	chr7	24971897	24972097	-	1	NA	NA	NA	731	NM_010261	14470	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.050000	0.636816	
mm_98461.1	chr11	94947824	94948024	+	1	NA	NA	NA	11700	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.015000	0.572139	
mm_99995.1	chr11	114780393	114780593	+	1	NA	NA	NA	15104	NM_001102615	286942	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	0.010000	0.567164	
mm_38087.1	chr4	134156827	134157027	-	1	NA	NA	NA	-28174	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.040000	0.547264	
mm_6419.1	chr1	73905214	73905414	-	1	NA	NA	NA	-40848	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.005000	0.527363	
mm_76170.1	chr8	82391889	82392089	-	1	NA	NA	NA	10597	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.000000	0.432836	
mm_28325.1	chr3	89342240	89342440	-	1	NA	NA	NA	-4312	NM_007910	13639	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	0.020000	0.552239	
mm_143293.1	chr17	65884820	65885020	-	1	NA	NA	NA	3	NM_001198949	19765	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.120000	0.686567	
mm_143648.1	chr17	79355667	79355867	-	1	NA	NA	NA	-676	NM_026514	260409	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	0.095000	0.656716	
mm_59407.1	chr7	27035464	27035664	+	1	NA	NA	NA	6474	NM_133657	13085	Mm.20770	NM_133657	ENSMUSG00000060407	Cyp2a12	-	cytochrome P450, family 2, subfamily a, polypeptide 12	protein-coding	0.005000	0.532338	
mm_114850.1	chr13	92853004	92853204	+	1	NA	NA	NA	8317	NM_001162945	382793	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	0.005000	0.417910	
mm_92152.1	chr10	67285182	67285382	-	1	NA	NA	NA	-1	NM_001036293	641340	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.175000	0.791045	
mm_135650.1	chr16	52390298	52390498	-	1	NA	NA	NA	62683	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.353234	
mm_965.1	chr1	58115273	58115473	+	1	NA	NA	NA	2237	NM_023617	71724	Mm.20108	NM_023617	ENSMUSG00000064294	Aox3	1200011D03Rik|AI326299|Aoh1|Aoh2	aldehyde oxidase 3	protein-coding	0.010000	0.467662	
mm_70388.1	chr8	10853316	10853516	+	1	NA	NA	NA	29038	NR_040705	320014	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.010000	0.497512	-31(CCCTATAAATGA,-,0.00)
mm_123547.1	chr14	66831247	66831447	-	1	NA	NA	NA	37253	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.000000	0.412935	
mm_23826.1	chr3	81036971	81037171	+	1	NA	NA	NA	655	NM_019971	54635	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C	platelet-derived growth factor, C polypeptide	protein-coding	0.075000	0.666667	
mm_115595.1	chr13	11827244	11827444	-	1	NA	NA	NA	279601	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.000000	0.452736	
mm_140006.1	chr17	73111136	73111336	+	1	NA	NA	NA	3251	NM_001177967	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.005000	0.477612	-37(GCCTATATAAGG,-,0.00)
mm_30100.1	chr3	138488941	138489141	-	1	NA	NA	NA	341	NM_175224	75624	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	0.135000	0.751244	
mm_123271.1	chr14	61366531	61366731	-	1	NA	NA	NA	-6186	NM_026598	68177	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0.000000	0.298507	
mm_15859.1	chr2	164822868	164823068	+	1	NA	NA	NA	282	NM_028028	71971	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	0.070000	0.631841	
mm_77775.1	chr9	3016789	3016989	+	1	NA	NA	NA	21854	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.020000	0.348259	
mm_48504.1	chr5	142817452	142817652	-	1	NA	NA	NA	-165	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.090000	0.606965	
mm_112305.1	chr12	114788757	114788957	-	1	NA	NA	NA	-275163	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.005000	0.412935	
mm_76591.1	chr8	89042691	89042891	-	1	NA	NA	NA	1371	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.145000	0.751244	
mm_51370.1	chr6	72854289	72854489	+	1	NA	NA	NA	44903	NM_001347231	74287	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0.015000	0.497512	
mm_152429.1	chr19	10677148	10677348	-	1	NA	NA	NA	823	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.005000	0.452736	-54(GTATATATAAGG,-,0.00)
mm_157982.1	chrX	94123340	94123540	-	1	NA	NA	NA	-33	NM_001044386	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	0.155000	0.761194	
mm_64496.1	chr7	143465995	143466195	+	1	NA	NA	NA	-5045	NM_001161624	12577	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.025000	0.507463	69(CGCCATAAATGG,-,0.00)
mm_74750.1	chr8	19026485	19026685	-	1	NA	NA	NA	-56	NM_183036	360212	Mm.271558	NM_183036	ENSMUSG00000053790	Defb38	BD-38	defensin beta 38	protein-coding	0.000000	0.447761	
mm_14295.1	chr2	128863915	128864115	+	1	NA	NA	NA	83	NM_024237	70370	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	0.090000	0.686567	
mm_151781.1	chr19	5366159	5366359	-	1	NA	NA	NA	104	NM_001038231	23825	Mm.358649	NM_011793	ENSMUSG00000024844	Banf1	Baf|Bcrp1|L2bp1/Baf	barrier to autointegration factor 1	protein-coding	0.075000	0.646766	
mm_34806.1	chr4	154869511	154869711	+	1	NA	NA	NA	26	NM_013783	27390	Mm.116944	NM_013783	ENSMUSG00000058183	Mmel1	Mell1|NEP2|NEPII|Nl1|SEP	membrane metallo-endopeptidase-like 1	protein-coding	0.020000	0.572139	75(GCCTTTAAGGAC,+,0.00)
mm_18997.1	chr2	76868320	76868520	-	1	NA	NA	NA	114127	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.055000	0.487562	
mm_27007.1	chr3	25857305	25857505	-	1	NA	NA	NA	295902	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.417910	
mm_106144.1	chr11	116533602	116533802	-	1	NA	NA	NA	464	NM_025367	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.085000	0.611940	
mm_64318.1	chr7	141924291	141924491	+	1	NA	NA	NA	-21930	NM_001347562	54473	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	0.055000	0.547264	
mm_49039.1	chr6	4759937	4760137	+	1	NA	NA	NA	12731	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.407960	-87(CCTTTAAGGCCG,+,0.00)
mm_81483.1	chr9	109968877	109969077	+	1	NA	NA	NA	37203	NM_008633	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.005000	0.432836	
mm_50813.1	chr6	54326887	54327087	+	1	NA	NA	NA	-25	NM_030024	78004	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	0.055000	0.606965	
mm_145604.1	chr18	61065605	61065805	+	1	NA	NA	NA	20555	NM_008809	18596	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.060000	0.611940	
mm_114138.1	chr13	55253020	55253220	+	1	NA	NA	NA	43338	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.000000	0.393035	
mm_2331.1	chr1	92831527	92831727	+	1	NA	NA	NA	-59	NM_016696	14733	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.180000	0.860697	
mm_86390.1	chr9	123942047	123942247	-	1	NA	NA	NA	26545	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.005000	0.432836	
mm_43750.1	chr5	140419300	140419500	+	1	NA	NA	NA	95	NM_133916	27979	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	0.130000	0.741294	
mm_85315.1	chr9	101198940	101199140	-	1	NA	NA	NA	33	NM_172144	235542	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0.020000	0.437811	
mm_14777.1	chr2	145822178	145822378	+	1	NA	NA	NA	36162	NM_028724	74030	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.045000	0.517413	
mm_52437.1	chr6	113615986	113616186	+	1	NA	NA	NA	-7935	NM_009507	22346	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0.030000	0.497512	
mm_111641.1	chr12	102653232	102653432	-	1	NA	NA	NA	31688	NR_035457	100316812		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.015000	0.562189	
mm_167315.1	chr8	66386166	66386366	+	1	NA	NA	NA	-35	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.000000	0.402985	
mm_72497.1	chr8	83740247	83740447	+	1	NA	NA	NA	964	NM_001163029	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.020000	0.562189	
mm_24592.1	chr3	93445008	93445208	+	1	NA	NA	NA	2778	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.040000	0.557214	
mm_13990.1	chr2	121806236	121806436	+	1	NA	NA	NA	721	NM_172673	228564	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|5830442F04|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	0.080000	0.651741	
mm_153374.1	chr19	40356575	40356775	-	1	NA	NA	NA	45635	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.015000	0.552239	
mm_126205.1	chr15	78885202	78885402	+	1	NA	NA	NA	-6538	NR_105920	102466210		NR_105920	ENSMUSG00000099267	Mir6955	Gm27769|mmu-mir-6955	microRNA 6955	ncRNA	0.030000	0.587065	
mm_63504.1	chr7	127841678	127841878	+	1	NA	NA	NA	-30	NM_009294	20909	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.085000	0.656716	
mm_138589.1	chr17	35506233	35506433	+	1	NA	NA	NA	301	NM_013633	18999	Mm.17031	NM_013633	ENSMUSG00000024406	Pou5f1	NF-A3|Oct-3|Oct-3/4|Oct-4|Oct3|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4	POU domain, class 5, transcription factor 1	protein-coding	0.040000	0.611940	
mm_27861.1	chr3	79158575	79158775	-	1	NA	NA	NA	-12800	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.005000	0.497512	
mm_145057.1	chr18	40306142	40306342	+	1	NA	NA	NA	47881	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.015000	0.562189	
mm_42373.1	chr5	114928056	114928256	+	1	NA	NA	NA	4916	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.015000	0.522388	
mm_48413.1	chr5	140262499	140262699	-	1	NA	NA	NA	58953	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.015000	0.482587	
mm_160871.1	chr11	67695123	67695323	+	1	NA	NA	NA	-103	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.015000	0.532338	-75(GGGCTTAAATGC,-,0.00),-73(GCTTAAATGCCG,+,0.00)
mm_44012.1	chr5	147188581	147188781	+	1	NA	NA	NA	-15	NM_008178	14842	Mm.4797	NM_008178	ENSMUSG00000053129	Gsx1	Gsh-1|Gsh1	GS homeobox 1	protein-coding	0.090000	0.661692	-33(TCCTATTTAAGC,-,0.00)
mm_48581.1	chr5	143517114	143517314	-	1	NA	NA	NA	10779	NM_009007	19353	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	RAS-related C3 botulinum substrate 1	protein-coding	0.040000	0.537313	
mm_119602.1	chr14	51090006	51090206	+	1	NA	NA	NA	-971	NM_001161731	11727	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	0.035000	0.437811	
mm_142324.1	chr17	43477667	43477867	-	1	NA	NA	NA	25006	NM_008585	17287	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	0.000000	0.368159	
mm_45759.1	chr5	86890157	86890357	-	1	NA	NA	NA	16680	NM_153598	100727	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding	0.005000	0.432836	
mm_85394.1	chr9	103288176	103288376	-	1	NA	NA	NA	21	NM_027918	71775	Mm.18802	NM_027918	ENSMUSG00000033688	1300017J02Rik	Ica|mICA	RIKEN cDNA 1300017J02 gene	protein-coding	0.020000	0.567164	
mm_109360.1	chr12	109635914	109636114	+	1	NA	NA	NA	2	NR_046302	449562		NR_046302	ENSMUSG00000088294	AF357425	MBII-48	snoRNA AF357425	snoRNA	0.015000	0.447761	
mm_75386.1	chr8	45410466	45410666	-	1	NA	NA	NA	-27	NM_126166	142980	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0.015000	0.482587	
mm_51103.1	chr6	67272801	67273001	+	1	NA	NA	NA	5922	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.000000	0.378109	
mm_166546.1	chr6	36195317	36195517	-	1	NA	NA	NA	-192667	NM_203491	243764	Mm.448632	NM_203491	ENSMUSG00000045613	Chrm2	AChR-M2|Chrm-2|M2	cholinergic receptor, muscarinic 2, cardiac	protein-coding	0.000000	0.373134	
mm_58827.1	chr7	16738356	16738556	+	1	NA	NA	NA	12	NM_198613	232910	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	0.075000	0.666667	
mm_119020.1	chr14	30008984	30009184	+	1	NA	NA	NA	84	NM_001136240	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.110000	0.721393	
mm_151902.1	chr19	5799207	5799407	-	1	NA	NA	NA	-3326	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.005000	0.452736	
mm_34163.1	chr4	139592888	139593088	+	1	NA	NA	NA	18268	NM_001205173	212632	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	0.015000	0.457711	
mm_100021.1	chr11	114903305	114903505	+	1	NA	NA	NA	13364	NM_170758	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.020000	0.522388	
mm_94340.1	chr11	4729779	4729979	+	1	NA	NA	NA	16899	NM_138948	192650	Mm.207056	NM_138948	ENSMUSG00000009075	Cabp7	-	calcium binding protein 7	protein-coding	0.045000	0.601990	
mm_168919.1	chr12	58770030	58770230	+	1	NA	NA	NA	241887	NM_009147	20334	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	0.075000	0.686567	
mm_169965.1	chr1	70458240	70458440	+	1	NA	NA	NA	-267375	NM_177164	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding	0.005000	0.303483	
mm_1983.1	chr1	87020406	87020606	+	1	NA	NA	NA	69422	NM_007433	11650	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0.000000	0.537313	
mm_47194.1	chr5	120772880	120773080	-	1	NA	NA	NA	4679	NM_145226	246727	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	0.035000	0.592040	
mm_160568.1	chr9	56885199	56885399	+	1	NA	NA	NA	20195	NM_139001	121021	Mm.41329	NM_139001	ENSMUSG00000032911	Cspg4	4732461B14Rik|AN2|NG2	chondroitin sulfate proteoglycan 4	protein-coding	0.020000	0.592040	
mm_95860.1	chr11	58008877	58009077	+	1	NA	NA	NA	-87	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.195000	0.845771	
mm_53505.1	chr6	135368753	135368953	+	1	NA	NA	NA	1360	NM_001288627	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.005000	0.462687	
mm_59740.1	chr7	28814745	28814945	+	1	NA	NA	NA	3955	NM_177301	15388	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.000000	0.393035	8(CACTTTTTAAAG,-,0.00),10(CTTTTTAAAGCA,+,0.00)
mm_98137.1	chr11	87566625	87566825	+	1	NA	NA	NA	-11664	NM_001284398	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding	0.010000	0.457711	-83(CCTTTTATGACA,+,0.00)
mm_99488.1	chr11	102710244	102710444	+	1	NA	NA	NA	-12619	NM_025918	52715	Mm.277638	NM_025918	ENSMUSG00000020925	Ccdc43	2610001E01Rik|D11Ertd707e	coiled-coil domain containing 43	protein-coding	0.015000	0.402985	
mm_5087.1	chr1	4496363	4496563	-	1	NA	NA	NA	891	NM_001289464	20671	Mm.279103	NM_011441	ENSMUSG00000025902	Sox17	-	SRY (sex determining region Y)-box 17	protein-coding	0.030000	0.522388	
mm_99647.1	chr11	105589359	105589559	+	1	NA	NA	NA	-527	NM_181071	77097	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.040000	0.592040	-32(CTCTTTAGGGCC,+,0.00)
mm_49297.1	chr6	17725244	17725444	+	1	NA	NA	NA	-18248	NM_001289629	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.015000	0.348259	
mm_31975.1	chr4	88353794	88353994	+	1	NA	NA	NA	85032	NM_025760	66775	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.005000	0.477612	
mm_171122.1	chr3	142881534	142881734	-	1	NA	NA	NA	370	NM_178654	109333	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	0.140000	0.786070	
mm_127050.1	chr15	96698939	96699139	+	1	NA	NA	NA	659	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.135000	0.756219	
mm_160810.1	chr11	20242316	20242516	-	1	NA	NA	NA	7008	NM_172260	216543	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.010000	0.393035	
mm_13821.1	chr2	119237442	119237642	+	1	NA	NA	NA	182	NM_016907	20732	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	0.135000	0.711443	
mm_133223.1	chr16	76373002	76373202	+	1	NA	NA	NA	-53	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.130000	0.706468	85(CCTTTTCTGCCC,+,0.00)
mm_61194.1	chr7	63916798	63916998	+	1	NA	NA	NA	41	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.025000	0.482587	
mm_120311.1	chr14	63142266	63142466	+	1	NA	NA	NA	19904	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.452736	
mm_52982.1	chr6	123263318	123263518	+	1	NA	NA	NA	1311	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.005000	0.422886	
mm_110877.1	chr12	74082008	74082208	-	1	NA	NA	NA	84347	NM_172804	238266	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding	0.010000	0.412935	
mm_119505.1	chr14	47380447	47380647	+	1	NA	NA	NA	6687	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.000000	0.432836	
mm_14948.1	chr2	151969928	151970128	+	1	NA	NA	NA	-2411	NR_035478	100316704		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	0.055000	0.616915	
mm_113323.1	chr13	30786304	30786504	+	1	NA	NA	NA	37171	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.015000	0.597015	
mm_97312.1	chr11	76845759	76845959	+	1	NA	NA	NA	1149	NM_007754	12874	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0.035000	0.452736	
mm_168039.1	chrY	90742844	90743044	-	1	NA	NA	NA	12106	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.050000	0.636816	
mm_147017.1	chr18	34579001	34579201	-	1	NA	NA	NA	5	NM_080637	75533	Mm.275430	NM_080637	ENSMUSG00000035984	Nme5	1700019D05Rik|Nm23-M5	NME/NM23 family member 5	protein-coding	0.035000	0.497512	-71(CCATTTAAAACG,+,0.00)
mm_41237.1	chr5	88764917	88765117	+	1	NA	NA	NA	4	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.115000	0.731343	
mm_50493.1	chr6	48990092	48990292	+	1	NA	NA	NA	3331	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.025000	0.611940	
mm_165708.1	chr3	98221655	98221855	+	1	NA	NA	NA	-401	NM_026328	67709	Mm.46306	NM_026328	ENSMUSG00000027876	Reg4	2010002L15Rik|GISP|RELP	regenerating islet-derived family, member 4	protein-coding	0.030000	0.492537	
mm_163050.1	chr11	58390214	58390414	-	1	NA	NA	NA	9668	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.020000	0.547264	
mm_87198.1	chr10	39533042	39533242	+	1	NA	NA	NA	-79792	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.015000	0.497512	
mm_19855.1	chr2	113828942	113829142	-	1	NA	NA	NA	49	NM_009162	20394	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	0.070000	0.616915	
mm_144007.1	chr17	88305243	88305443	-	1	NA	NA	NA	-135369	NM_180974	14236	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.045000	0.552239	
mm_127470.1	chr15	101272722	101272922	+	1	NA	NA	NA	5976	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.040000	0.537313	
mm_147336.1	chr18	42899232	42899432	-	1	NA	NA	NA	174	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.060000	0.646766	
mm_102509.1	chr11	60777120	60777320	-	1	NA	NA	NA	145	NM_009410	21975	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0.060000	0.552239	
mm_10526.1	chr2	16401558	16401758	+	1	NA	NA	NA	45354	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.000000	0.388060	-59(TTTTTTAAAAGC,-,0.00)
mm_36371.1	chr4	76487262	76487462	-	1	NA	NA	NA	-1209076	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.000000	0.303483	
mm_34189.1	chr4	140701514	140701714	+	1	NA	NA	NA	141	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.045000	0.522388	
mm_59160.1	chr7	24378390	24378590	+	1	NA	NA	NA	8227	NM_008433	16534	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0.010000	0.407960	
mm_31612.1	chr4	59003068	59003268	+	1	NA	NA	NA	-25	NM_001033165	72429	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	0.160000	0.791045	
mm_53850.1	chr6	149141477	149141677	+	1	NA	NA	NA	64	NM_177101	320204	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	0.100000	0.572139	
mm_160544.1	chr9	44384160	44384360	+	1	NA	NA	NA	4770	NM_021395	12282	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	0.035000	0.572139	
mm_53643.1	chr6	140623581	140623781	+	1	NA	NA	NA	179	NM_001005605	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.160000	0.815920	
mm_107334.1	chr12	32378600	32378800	+	1	NA	NA	NA	-89	NM_001162903	72123	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.075000	0.666667	-35(GCCCATTTAAAG,-,0.00),-33(CCATTTAAAGAA,+,0.00)
mm_18039.1	chr2	38926273	38926473	-	1	NA	NA	NA	88	NM_010264	14536	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	0.110000	0.726368	
mm_122475.1	chr14	45610495	45610695	-	1	NA	NA	NA	47458	NR_039593	100628600		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	0.030000	0.497512	
mm_164601.1	chr17	29008013	29008213	-	1	NA	NA	NA	-176	NM_134115	106504	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0.050000	0.532338	
mm_76839.1	chr8	105283157	105283357	-	1	NA	NA	NA	6271	NM_001166394	74356	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0.080000	0.621891	
mm_147009.1	chr18	34506733	34506933	-	1	NA	NA	NA	-10	NM_146084	225358	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	0.170000	0.781095	
mm_62896.1	chr7	116334156	116334356	+	1	NA	NA	NA	-66	NM_026533	68052	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0.080000	0.606965	
mm_74175.1	chr8	123452326	123452526	+	1	NA	NA	NA	9167	NM_001281803	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.015000	0.502488	
mm_33443.1	chr4	130366762	130366962	+	1	NA	NA	NA	6730	NM_025645	66585	Mm.423019	NM_025645	ENSMUSG00000074088	Snrnp40	0610009C03Rik|Prp8bp|Wdr57	small nuclear ribonucleoprotein 40 (U5)	protein-coding	0.005000	0.482587	
mm_119491.1	chr14	47377902	47378102	+	1	NA	NA	NA	4142	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.010000	0.552239	
mm_8574.1	chr1	155742031	155742231	-	1	NA	NA	NA	-104	NM_010712	16872	Mm.103624	NM_010712	ENSMUSG00000026468	Lhx4	A330062J17Rik|Gsh-4|Gsh4	LIM homeobox protein 4	protein-coding	0.050000	0.686567	
mm_143807.1	chr17	83585428	83585628	-	1	NA	NA	NA	46367	NM_153512	225030	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.015000	0.343284	
mm_125661.1	chr15	64173174	64173374	+	1	NA	NA	NA	-112826	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.000000	0.417910	
mm_130991.1	chr15	103420454	103420654	-	1	NA	NA	NA	9873	NM_028797	74174	Mm.325325	NM_028797	ENSMUSG00000022487	Gtsf1	1700006H03Rik|Cue110	gametocyte specific factor 1	protein-coding	0.000000	0.462687	-94(TGCCTTTAAAGG,-,0.00),-93(GCCTTTAAAGGC,+,0.00),-93(GCCTTTAAAGGC,-,0.00),-92(CCTTTAAAGGCC,+,0.00)
mm_163642.1	chr13	62620985	62621185	-	1	NA	NA	NA	3097	NM_001324406	211378	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	0.000000	0.383085	
mm_173287.1	chrY	1853910	1854110	-	1	NA	NA	NA	316399	NM_009571	22768	Mm.411381	NM_009571	ENSMUSG00000000103	Zfy2	Zfy-2	zinc finger protein 2, Y-linked	protein-coding	0.030000	0.547264	
mm_118041.1	chr13	101694329	101694529	-	1	NA	NA	NA	-1799	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.035000	0.437811	
mm_165322.1	chr2	108770872	108771072	+	1	NA	NA	NA	507318	NM_029790	76894	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.000000	0.398010	
mm_118099.1	chr13	103911752	103911952	-	1	NA	NA	NA	8734	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.010000	0.378109	
mm_54084.1	chr6	15758417	15758617	-	1	NA	NA	NA	37856	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.005000	0.432836	20(TGCCTGAAAAGG,-,0.00)
mm_53949.1	chr6	5254417	5254617	-	1	NA	NA	NA	1716	NM_173006	269823	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	0.015000	0.412935	
mm_139459.1	chr17	55952706	55952906	+	1	NA	NA	NA	183	NM_015766	50498	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	0.015000	0.597015	
mm_159972.1	chr6	100852335	100852535	+	1	NA	NA	NA	18797	NM_182939	232314	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	0.005000	0.348259	-51(GTCCATATAAGC,-,0.00)
mm_64941.1	chr7	16312359	16312559	-	1	NA	NA	NA	2876	NM_133234	170770	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.065000	0.701493	
mm_90650.1	chr10	128747694	128747894	+	1	NA	NA	NA	-85	NM_030100	78428	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	0.055000	0.567164	
mm_80584.1	chr9	84423853	84424053	+	1	NA	NA	NA	-350445	NR_040739	75253	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	0.025000	0.517413	-48(GTGTCTTAAAAG,-,0.00)
mm_68752.1	chr7	121065706	121065906	-	1	NA	NA	NA	8724	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.000000	0.422886	
mm_33831.1	chr4	135626636	135626836	+	1	NA	NA	NA	81	NR_027909	73937	Mm.292326	NM_028688	ENSMUSG00000086788	1700029M20Rik	4930406E24Rik	RIKEN cDNA 1700029M20 gene	ncRNA	0.045000	0.527363	
mm_104163.1	chr11	87342777	87342977	-	1	NA	NA	NA	16117	NM_177167	320472	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	0.010000	0.393035	
mm_153006.1	chr19	30175325	30175525	-	1	NA	NA	NA	16	NM_138595	104174	Mm.274852	NM_138595	ENSMUSG00000024827	Gldc	D030049L12Rik|D19Wsu57e	glycine decarboxylase	protein-coding	0.060000	0.621891	
mm_146157.1	chr18	75018596	75018796	+	1	NA	NA	NA	-76	NM_027727	69190	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	0.100000	0.636816	
mm_81675.1	chr9	111038646	111038846	+	1	NA	NA	NA	18498	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.010000	0.412935	
mm_160269.1	chr7	115995031	115995231	-	1	NA	NA	NA	-45	NM_011445	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.005000	0.373134	
mm_106531.1	chr11	120573158	120573358	-	1	NA	NA	NA	-322	NM_011032	18453	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.090000	0.636816	
mm_38407.1	chr4	139092653	139092853	-	1	NA	NA	NA	217	NM_008675	17965	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	0.160000	0.781095	
mm_106518.1	chr11	120551032	120551232	-	1	NA	NA	NA	0	NM_026814	68701	Mm.46477	NM_026814	ENSMUSG00000025129	Ppp1r27	1110033I14Rik|Dysfip1|toonin	protein phosphatase 1, regulatory subunit 27	protein-coding	0.045000	0.547264	-55(GGCTTTATATAG,-,0.00),-53(CTTTATATAGCC,+,0.00),-34(CCCTTTATAAGC,+,0.00),-34(CCCTTTATAAGC,-,0.00)
mm_63702.1	chr7	130645817	130646017	+	1	NA	NA	NA	-46639	NM_001347637	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.030000	0.562189	
mm_114270.1	chr13	58148443	58148643	+	1	NA	NA	NA	1594	NR_126543	67339	Mm.121929	NR_126543		1700066J03Rik	-	RIKEN cDNA 1700066J03 gene	ncRNA	0.025000	0.497512	
mm_23942.1	chr3	84480454	84480654	+	1	NA	NA	NA	-115	NM_001033301	229474	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0.090000	0.711443	
mm_12791.1	chr2	79635210	79635410	+	1	NA	NA	NA	-115	NM_080558	70599	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0.105000	0.751244	-85(GGCTAGAAAGGG,-,0.00)
mm_150151.1	chr19	31949918	31950118	+	1	NA	NA	NA	81257	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.000000	0.398010	
mm_12191.1	chr2	65620692	65620892	+	1	NA	NA	NA	23	NM_001346679	110876	Mm.220329	NM_001099298	ENSMUSG00000075318	Scn2a	6430408L10|A230052E19Rik|Nav1.2|Scn2a1	sodium channel, voltage-gated, type II, alpha	protein-coding	0.015000	0.407960	
mm_134437.1	chr16	18235029	18235229	-	1	NA	NA	NA	7	NM_172151	27801	Mm.326263	NM_172151	ENSMUSG00000060166	Zdhhc8	D16H22S1738E|DHHC-8|E330009O14Rik|Op53c05|ZDHHCL1	zinc finger, DHHC domain containing 8	protein-coding	0.160000	0.820896	
mm_129105.1	chr15	76048475	76048675	-	1	NA	NA	NA	16313	NR_105917	102466772		NR_105917	ENSMUSG00000098451	Mir6952	Gm27948|mmu-mir-6952	microRNA 6952	ncRNA	0.050000	0.631841	
mm_67126.1	chr7	70366282	70366482	-	1	NA	NA	NA	364	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.015000	0.472637	
mm_15147.1	chr2	153986492	153986692	+	1	NA	NA	NA	11647	NM_001080811	545477	Mm.379973	NM_001080811	ENSMUSG00000078998	Bpifa6	EG545477|Gm5840|Splunc6	BPI fold containing family A, member 6	protein-coding	0.010000	0.417910	
mm_29729.1	chr3	126668859	126669059	-	1	NA	NA	NA	72008	NM_023813	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.035000	0.542289	
mm_131112.1	chr16	5146891	5147091	+	1	NA	NA	NA	-118	NM_001127725	665119	Mm.102072	NM_001127725	ENSMUSG00000091712	Sec14l5	-	SEC14-like lipid binding 5	protein-coding	0.030000	0.592040	
mm_150736.1	chr19	43752928	43753128	+	1	NA	NA	NA	5	NM_025530	66388	Mm.20257	NM_025530	ENSMUSG00000025193	Cutc	2310039I18Rik|AI326282|CGI-32	cutC copper transporter	protein-coding	0.155000	0.741294	
mm_65555.1	chr7	27133425	27133625	-	1	NA	NA	NA	13570	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.025000	0.467662	
mm_127243.1	chr15	99601100	99601300	+	1	NA	NA	NA	-200	NM_175087	11831	Mm.202309	NM_175087	ENSMUSG00000043144	Aqp6	AI790337	aquaporin 6	protein-coding	0.015000	0.611940	
mm_90177.1	chr10	119691960	119692160	+	1	NA	NA	NA	69639	NR_045359	75321	Mm.402041	NR_045359	ENSMUSG00000084764	Grip1os2	4930564G21Rik	glutamate receptor interacting protein 1, opposite strand 2	ncRNA	0.030000	0.517413	
mm_78799.1	chr9	44047306	44047506	+	1	NA	NA	NA	4022	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.015000	0.587065	
mm_57444.1	chr6	124965376	124965576	-	1	NA	NA	NA	53	NM_001164089	26894	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e	COP9 signalosome subunit 7A	protein-coding	0.125000	0.731343	
mm_162082.1	chrX	26702538	26702738	-	1	NA	NA	NA	0	NM_001162364	100039120	Mm.379326	NM_001162364	ENSMUSG00000071788	Gm14525	OTTMUSG00000017011	predicted gene 14525	protein-coding	0.010000	0.462687	
mm_18885.1	chr2	76704629	76704829	-	1	NA	NA	NA	29414	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.015000	0.348259	
mm_137907.1	chr17	32036006	32036206	+	1	NA	NA	NA	-56	NM_028244	72462	Mm.102761	NM_028244	ENSMUSG00000058392	Rrp1b	2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179	ribosomal RNA processing 1 homolog B (S. cerevisiae)	protein-coding	0.050000	0.597015	
mm_125607.1	chr15	60822885	60823085	+	1	NA	NA	NA	20	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0.085000	0.646766	
mm_85194.1	chr9	96725873	96726073	-	1	NA	NA	NA	5702	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.025000	0.487562	
mm_167718.1	chr9	99035538	99035738	-	1	NA	NA	NA	52	NM_001080776	382097	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	0.020000	0.577114	
mm_4141.1	chr1	170868614	170868814	+	1	NA	NA	NA	-943	NM_001081304	226641	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.060000	0.522388	
mm_17190.1	chr2	25461024	25461224	-	1	NA	NA	NA	-30	NM_153557	227622	Mm.261780	NM_153557	ENSMUSG00000047617	BC029214	D930050G13Rik|Paxx	cDNA sequence BC029214	protein-coding	0.060000	0.577114	
mm_132025.1	chr16	27307541	27307741	+	1	NA	NA	NA	0	NM_198112	239790	Mm.390880	NM_198112	ENSMUSG00000052276	Ostn	Ostc	osteocrin	protein-coding	0.010000	0.422886	-34(GACTATAAAAAC,-,0.00)
mm_77065.1	chr8	109868330	109868530	-	1	NA	NA	NA	-173	NM_001122594	244650	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0.075000	0.661692	
mm_82877.1	chr9	32451361	32451561	-	1	NA	NA	NA	57476	NM_001168354	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.030000	0.452736	
mm_51541.1	chr6	83195930	83196130	+	1	NA	NA	NA	10084	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.045000	0.616915	
mm_49809.1	chr6	36388499	36388699	+	1	NA	NA	NA	-365	NR_015589	319472	Mm.226434	NR_015589	ENSMUSG00000073154	9330158H04Rik	-	RIKEN cDNA 9330158H04 gene	ncRNA	0.075000	0.636816	
mm_2882.1	chr1	131828889	131829089	+	1	NA	NA	NA	977	NM_173865	98396	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	0.005000	0.383085	
mm_76252.1	chr8	83693924	83694124	-	1	NA	NA	NA	37	NM_001199593	320795	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	0.025000	0.611940	
mm_21550.1	chr2	164071004	164071204	-	1	NA	NA	NA	-2	NM_025996	67145	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	0.075000	0.666667	-32(GGGCCTTAAAGG,-,0.00),-31(GGCCTTAAAGGC,-,0.00),-29(CCTTAAAGGCAC,+,0.00)
mm_110110.1	chr12	26443115	26443315	-	1	NA	NA	NA	13237	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.412935	
mm_170755.1	chr2	156839791	156839991	-	1	NA	NA	NA	-116	NM_001291124	228839	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0.095000	0.751244	
mm_137918.1	chr17	32335474	32335674	+	1	NA	NA	NA	-14336	NR_131218	56399	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	0.015000	0.447761	
mm_94671.1	chr11	17257498	17257698	+	1	NA	NA	NA	51	NM_020558	57316	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.105000	0.631841	
mm_59891.1	chr7	30307020	30307220	+	1	NA	NA	NA	-1633	NM_198027	233065	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	0.015000	0.492537	
mm_112743.1	chr13	19339876	19340076	+	1	NA	NA	NA	55837	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.557214	
mm_99138.1	chr11	100320510	100320710	+	1	NA	NA	NA	661	NM_011508	20918	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.030000	0.582090	
mm_66033.1	chr7	30626055	30626255	-	1	NA	NA	NA	-4	NM_025628	110323	Mm.400	NM_025628	ENSMUSG00000036751	Cox6b1	2010000G05Rik|Cox6b	cytochrome c oxidase, subunit VIb polypeptide 1	protein-coding	0.080000	0.597015	
mm_160081.1	chr7	13279164	13279364	+	1	NA	NA	NA	-1	NM_001083188	16881	Mm.288179	NM_010715	ENSMUSG00000056394	Lig1	AL033288|LigI	ligase I, DNA, ATP-dependent	protein-coding	0.055000	0.616915	
mm_23407.1	chr3	58414721	58414921	+	1	NA	NA	NA	101	NM_001081229	72033	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.080000	0.626866	
mm_133691.1	chr16	92538887	92539087	+	1	NA	NA	NA	40840	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	0.020000	0.572139	
mm_102464.1	chr11	59948035	59948235	-	1	NA	NA	NA	12	NR_045273	100504121	Mm.383770	NR_045273	ENSMUSG00000085260	Med9os	1700013G23Rik	mediator complex subunit 9, opposite strand	ncRNA	0.075000	0.582090	
mm_1824.1	chr1	82587083	82587283	+	1	NA	NA	NA	262	NM_007734	12828	Mm.389135	NM_007734	ENSMUSG00000079465	Col4a3	[a]3(IV)|alpha3(IV)	collagen, type IV, alpha 3	protein-coding	0.055000	0.626866	
mm_131404.1	chr16	14389798	14389998	+	1	NA	NA	NA	28340	NM_008576	17250	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.020000	0.507463	
mm_56687.1	chr6	113934587	113934787	-	1	NA	NA	NA	-6	NM_001347365	11941	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.030000	0.507463	
mm_29314.1	chr3	108012355	108012555	-	1	NA	NA	NA	5518	NM_010358	14862	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	0.020000	0.537313	
mm_114176.1	chr13	55609677	55609877	+	1	NA	NA	NA	9881	NM_001311137	218271	Mm.139825	NM_146045	ENSMUSG00000021504	B4galt7	-	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)	protein-coding	0.025000	0.527363	
mm_8707.1	chr1	158953392	158953592	-	1	NA	NA	NA	3946	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding	0.005000	0.318408	
mm_79621.1	chr9	58822853	58823053	+	1	NA	NA	NA	-559	NM_001081192	330953	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0.120000	0.726368	
mm_25538.1	chr3	115715064	115715264	+	1	NA	NA	NA	-109	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.035000	0.522388	
mm_21241.1	chr2	156167631	156167831	-	1	NA	NA	NA	11849	NM_001291115	170791	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.010000	0.323383	
mm_124905.1	chr15	10952256	10952456	+	1	NA	NA	NA	-1	NM_001204134	81799	Mm.280158	NM_030888	ENSMUSG00000058914	C1qtnf3	2310005P21Rik|CORS-26|CORS26|CTRP3|Corcs|Cors	C1q and tumor necrosis factor related protein 3	protein-coding	0.040000	0.547264	
mm_97084.1	chr11	73111669	73111869	+	1	NA	NA	NA	21174	NM_008399	16407	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	0.025000	0.597015	
mm_53279.1	chr6	128673907	128674107	+	1	NA	NA	NA	11622	NM_053165	94071	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	0.010000	0.427861	
mm_143530.1	chr17	73901991	73902191	-	1	NA	NA	NA	48105	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.005000	0.407960	
mm_78702.1	chr9	41327183	41327383	+	1	NA	NA	NA	-49243	NR_040725	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.000000	0.437811	
mm_88743.1	chr10	80282928	80283128	+	1	NA	NA	NA	4864	NR_105876	102466207		NR_105876	ENSMUSG00000098672	Mir6911	Gm27822|mmu-mir-6911	microRNA 6911	ncRNA	0.045000	0.587065	
mm_53633.1	chr6	140591534	140591734	+	1	NA	NA	NA	-31029	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.015000	0.552239	
mm_40186.1	chr5	36374578	36374778	+	1	NA	NA	NA	23461	NM_030889	81840	Mm.34113	NM_030889	ENSMUSG00000029093	Sorcs2	N28137|mKIAA1329	sortilin-related VPS10 domain containing receptor 2	protein-coding	0.035000	0.507463	
mm_13448.1	chr2	105224198	105224398	+	1	NA	NA	NA	-44	NM_028747	74088	Mm.46188	NM_028747	ENSMUSG00000055312	Them7	0610012H03Rik	thioesterase superfamily member 7	protein-coding	0.050000	0.601990	
mm_40507.1	chr5	57731606	57731806	+	1	NA	NA	NA	13625	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.010000	0.447761	
mm_144493.1	chr18	24205615	24205815	+	1	NA	NA	NA	-279	NM_001160404	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.205000	0.850746	
mm_140173.1	chr17	80373583	80373783	+	1	NA	NA	NA	-141	NR_028385	791338	Mm.204722	NR_028385		Gm10190	ENSMUSG00000066938	predicted gene 10190	ncRNA	0.170000	0.766169	
mm_19223.1	chr2	84650666	84650866	-	1	NA	NA	NA	-26	NM_001085448	12388	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.005000	0.457711	
mm_24059.1	chr3	87915072	87915272	+	1	NA	NA	NA	-4372	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.000000	0.532338	
mm_139313.1	chr17	48351761	48351961	+	1	NA	NA	NA	5460	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.010000	0.611940	
mm_102127.1	chr11	53430285	53430485	-	1	NA	NA	NA	446	NM_025352	22272	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	0.050000	0.517413	
mm_104505.1	chr11	95966355	95966555	-	1	NA	NA	NA	-3072	NR_037223	100526468		NR_037223	ENSMUSG00000093358	Mir3063	mmu-mir-3063	microRNA 3063	ncRNA	0.010000	0.442786	
mm_113604.1	chr13	41249658	41249858	+	1	NA	NA	NA	-86	NM_001135577	108934	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.085000	0.666667	
mm_107193.1	chr12	25254857	25255057	+	1	NA	NA	NA	125783	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.025000	0.527363	
mm_128548.1	chr15	55557214	55557414	-	1	NA	NA	NA	-2	NM_026759	68537	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	0.100000	0.641791	
mm_67868.1	chr7	99162121	99162321	-	1	NA	NA	NA	20492	NM_026384	67800	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	0.030000	0.547264	
mm_20251.1	chr2	126500193	126500393	-	1	NA	NA	NA	-8740	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	0.010000	0.472637	
mm_6323.1	chr1	71606765	71606965	-	1	NA	NA	NA	46369	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.020000	0.472637	
mm_99524.1	chr11	103170634	103170834	+	1	NA	NA	NA	-404	NM_001077698	57778	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.115000	0.716418	
mm_4684.1	chr1	180587902	180588102	+	1	NA	NA	NA	801	NR_105869	102466761		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	0.030000	0.567164	
mm_143247.1	chr17	64331787	64331987	-	1	NA	NA	NA	-4	NM_001025309	224938	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja 2, RING-H2 motif containing	protein-coding	0.165000	0.756219	
mm_83066.1	chr9	37552869	37553069	-	1	NA	NA	NA	-224	NM_022029	64011	Mm.335065	NM_022029	ENSMUSG00000053310	Nrgn	0710001B06Rik|AI838505|NG|NG/RC3|Pss1|R75334|RC3	neurogranin	protein-coding	0.035000	0.557214	
mm_30284.1	chr3	148989005	148989205	-	1	NA	NA	NA	-34470	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.140000	0.766169	
mm_75607.1	chr8	61902593	61902793	-	1	NA	NA	NA	1	NM_001293772	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.010000	0.492537	
mm_67391.1	chr7	79844432	79844632	-	1	NA	NA	NA	-2180	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.020000	0.562189	
mm_20751.1	chr2	140389614	140389814	-	1	NA	NA	NA	-4	NM_001033296	228684	Mm.486585	NM_001033296	ENSMUSG00000074764	Sel1l2	Gm118	sel-1 suppressor of lin-12-like 2 (C. elegans)	protein-coding	0.005000	0.487562	
mm_90718.1	chr10	4432163	4432363	-	1	NA	NA	NA	89	NM_025343	66084	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	0.115000	0.696517	
mm_12426.1	chr2	70563442	70563642	+	1	NA	NA	NA	-185	NR_040496	68986	Mm.437697	NR_040496	ENSMUSG00000087264	Gad1os	1500002O10Rik	glutamate decarboxylase 1, opposite strand	ncRNA	0.070000	0.671642	
mm_18350.1	chr2	58160529	58160729	-	1	NA	NA	NA	-507	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.025000	0.442786	-62(TCTTATAAAGCT,+,0.00),-24(CGGCATAAAGGC,-,0.00)
mm_20005.1	chr2	119112659	119112859	-	1	NA	NA	NA	-58	NM_011234	19361	Mm.330492	NM_011234	ENSMUSG00000027323	Rad51	AV304093|Rad51a|Reca	RAD51 recombinase	protein-coding	0.105000	0.567164	
mm_136644.1	chr17	5804558	5804758	+	1	NA	NA	NA	5168	NR_045080	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.015000	0.442786	
mm_146772.1	chr18	20059170	20059370	-	1	NA	NA	NA	284	NM_013505	13506	Mm.280547	NM_013505	ENSMUSG00000024331	Dsc2	AW228162	desmocollin 2	protein-coding	0.080000	0.681592	
mm_1708.1	chr1	75236382	75236582	+	1	NA	NA	NA	59	NM_001159883	56812	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.110000	0.756219	
mm_29696.1	chr3	123114384	123114584	-	1	NA	NA	NA	-79497	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.045000	0.557214	
mm_114339.1	chr13	60751720	60751920	+	1	NA	NA	NA	34544	NM_199148	218275	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.005000	0.417910	
mm_100412.1	chr11	119425965	119426165	+	1	NA	NA	NA	35593	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.025000	0.482587	-82(TTTTTTATAGTC,+,0.00)
mm_55329.1	chr6	55681236	55681436	-	1	NA	NA	NA	-73	NM_009717	11922	Mm.5106	NM_009717	ENSMUSG00000037984	Neurod6	Atoh2|Math-2|Math2|Nex|Nex1m|bHLHa2	neurogenic differentiation 6	protein-coding	0.015000	0.452736	
mm_12870.1	chr2	83850971	83851171	+	1	NA	NA	NA	38343	NM_175514	241520	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	0.005000	0.293532	
mm_60150.1	chr7	38271302	38271502	+	1	NA	NA	NA	-54	NM_025390	66161	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0.070000	0.562189	
mm_125035.1	chr15	25758666	25758866	+	1	NA	NA	NA	-84532	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.015000	0.562189	
mm_80717.1	chr9	92275691	92275891	+	1	NA	NA	NA	189	NM_001195084	18828	Mm.10306	NM_008880	ENSMUSG00000032372	Plscr2	-	phospholipid scramblase 2	protein-coding	0.010000	0.437811	
mm_60480.1	chr7	44478277	44478477	+	1	NA	NA	NA	-6140	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.452736	
mm_128686.1	chr15	60836218	60836418	-	1	NA	NA	NA	-11238	NM_001162926	399603	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	0.010000	0.457711	-54(CCTTTTAGAGAG,+,0.00),-35(CTCCCTATAAGA,-,0.00),-33(CCCTATAAGAAG,-,0.00)
mm_70367.1	chr8	9144521	9144721	+	1	NA	NA	NA	-48	NR_073360	74688	Mm.159298	NR_073360	ENSMUSG00000109215	4930453L07Rik	-	RIKEN cDNA 4930453L07 gene	ncRNA	0.005000	0.507463	
mm_75546.1	chr8	57511423	57511623	-	1	NA	NA	NA	-320	NM_008252	97165	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.065000	0.621891	
mm_26959.1	chr3	21958653	21958853	-	1	NA	NA	NA	-117899	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.010000	0.487562	
mm_42663.1	chr5	119670731	119670931	+	1	NA	NA	NA	-31	NM_198052	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.090000	0.597015	
mm_109222.1	chr12	108792931	108793131	+	1	NA	NA	NA	-280	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.125000	0.751244	
mm_162031.1	chr19	53892178	53892378	+	1	NA	NA	NA	47	NM_011050	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.010000	0.631841	
mm_15733.1	chr2	164237080	164237280	+	1	NA	NA	NA	1161	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.398010	
mm_135422.1	chr16	45224432	45224632	-	1	NA	NA	NA	195	NM_177584	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.010000	0.462687	-35(AGCTATATATGC,-,0.00)
mm_108580.1	chr12	85029855	85030055	+	1	NA	NA	NA	33634	NM_178363	56531	Mm.153183	NM_178363	ENSMUSG00000021244	Ylpm1	A930013E17Rik|ZAP|Zap3	YLP motif containing 1	protein-coding	0.020000	0.507463	
mm_124090.1	chr14	79135075	79135275	-	1	NA	NA	NA	112192	NM_001033215	105590	Mm.486536	NM_001033215	ENSMUSG00000071262	Zfp957	AU017455	zinc finger protein 957	protein-coding	0.000000	0.393035	-34(GCCTATAAAAGG,-,0.00),35(CCTCAAATAGTC,+,0.00)
mm_169717.1	chr15	77775033	77775233	-	1	NA	NA	NA	-19904	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.040000	0.651741	
mm_22675.1	chr3	14970182	14970382	+	1	NA	NA	NA	-919	NR_040549	77127	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0.005000	0.487562	-35(CGCTATAAAAGG,-,0.00)
mm_123799.1	chr14	70520067	70520267	-	1	NA	NA	NA	93	NM_009755	12153	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.125000	0.751244	
mm_162722.1	chr10	37136033	37136233	-	1	NA	NA	NA	2793	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.110000	0.691542	
mm_25444.1	chr3	108257066	108257266	+	1	NA	NA	NA	240	NM_011967	26442	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	0.080000	0.587065	
mm_134267.1	chr16	13902907	13903107	-	1	NA	NA	NA	138	NM_001039533	94184	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0.125000	0.741294	
mm_69125.1	chr7	127026391	127026591	-	1	NA	NA	NA	-12	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.145000	0.825871	
mm_22778.1	chr3	20308310	20308510	+	1	NA	NA	NA	-32677	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.005000	0.383085	
mm_9379.1	chr1	172210314	172210514	-	1	NA	NA	NA	-3610	NM_011063	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.085000	0.577114	
mm_18503.1	chr2	62610531	62610731	-	1	NA	NA	NA	35624	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.005000	0.402985	
mm_101764.1	chr11	43682572	43682772	-	1	NA	NA	NA	674	NM_001164231	70802	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	0.155000	0.761194	
mm_113097.1	chr13	24373414	24373614	+	1	NA	NA	NA	-41608	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.005000	0.497512	-35(CACTATAAAAGG,-,0.00)
mm_21930.1	chr2	167044103	167044303	-	1	NA	NA	NA	-708	NM_001291162	98999	Mm.297074	NM_001033196	ENSMUSG00000039501	Znfx1	AI481105|Astx3	zinc finger, NFX1-type containing 1	protein-coding	0.025000	0.542289	
mm_3869.1	chr1	160989453	160989653	+	1	NA	NA	NA	10947	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.045000	0.567164	
mm_166829.1	chr7	18646948	18647148	-	1	NA	NA	NA	9677	NM_027403	72242	Mm.326858	NM_027403	ENSMUSG00000070796	Psg21	1600019C01Rik|1600025N01Rik|1600026N13Rik|cea8	pregnancy-specific glycoprotein 21	protein-coding	0.000000	0.497512	
mm_92226.1	chr10	68358353	68358553	-	1	NA	NA	NA	-37311	NR_045357	75148	Mm.23505	NR_045357		4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	0.005000	0.532338	
mm_172629.1	chr8	20410353	20410553	-	1	NA	NA	NA	14361	NR_028428	381598	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	0.010000	0.542289	
mm_51951.1	chr6	91739129	91739329	+	1	NA	NA	NA	55162	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.000000	0.437811	
mm_117686.1	chr13	94258596	94258796	-	1	NA	NA	NA	26585	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.015000	0.507463	
mm_141647.1	chr17	33649626	33649826	-	1	NA	NA	NA	11631	NR_028279	378460	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	0.050000	0.626866	
mm_111910.1	chr12	108792618	108792818	-	1	NA	NA	NA	-593	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.170000	0.786070	
mm_9346.1	chr1	172066506	172066706	-	1	NA	NA	NA	-9010	NM_010916	18071	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	0.015000	0.542289	
mm_144816.1	chr18	36288017	36288217	+	1	NA	NA	NA	6955	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.030000	0.527363	
mm_162294.1	chr1	31149794	31149994	-	1	NA	NA	NA	-26541	NM_153601	266744	Mm.389093	NM_153601	ENSMUSG00000050217	Lgsn	Gluld1|Lgs|lengsin	lengsin, lens protein with glutamine synthetase domain	protein-coding	0.015000	0.497512	
mm_145853.1	chr18	65453902	65454102	+	1	NA	NA	NA	23005	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.442786	-73(TAGTTTTTAAGG,-,0.00),-71(GTTTTTAAGGAG,+,0.00)
mm_144987.1	chr18	38250212	38250412	+	1	NA	NA	NA	63	NM_024179	66839	Mm.281086	NM_024179	ENSMUSG00000024442	0610009O20Rik	2700004E22Rik|Dele|Kiaa0141	RIKEN cDNA 0610009O20 gene	protein-coding	0.065000	0.666667	
mm_107124.1	chr12	19954101	19954301	+	1	NA	NA	NA	861578	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.120000	0.731343	
mm_80689.1	chr9	91378478	91378678	+	1	NA	NA	NA	9606	NM_009576	22774	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.060000	0.636816	
mm_27651.1	chr3	63964464	63964664	-	1	NA	NA	NA	169	NM_001331067	11416	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	0.080000	0.616915	
mm_6179.1	chr1	65102915	65103115	-	1	NA	NA	NA	348	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.040000	0.557214	
mm_70644.1	chr8	14095887	14096087	+	1	NA	NA	NA	112	NM_172910	244310	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	discs, large (Drosophila) homolog-associated protein 2	protein-coding	0.130000	0.721393	
mm_2562.1	chr1	115923880	115924080	+	1	NA	NA	NA	238843	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.000000	0.328358	35(GCTTTTATAGTA,+,0.00)
mm_45461.1	chr5	67815756	67815956	-	1	NA	NA	NA	31575	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.025000	0.502488	
mm_70724.1	chr8	18500625	18500825	+	1	NA	NA	NA	-94448	NM_173189	244329	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT	microcephaly, primary autosomal recessive 1	protein-coding	0.020000	0.497512	-31(TCCTTTATACAC,+,0.00)
mm_154760.1	chrX	12005673	12005873	+	1	NA	NA	NA	74780	NM_175045	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.040000	0.616915	
mm_172217.1	chr6	6351466	6351666	-	1	NA	NA	NA	102907	NR_136905	101056138	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0.025000	0.502488	
mm_44067.1	chr5	148489478	148489678	+	1	NA	NA	NA	63210	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.030000	0.517413	
mm_38819.1	chr4	148626666	148626866	-	1	NA	NA	NA	230	NR_027864	230908	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	0.085000	0.671642	
mm_151753.1	chr19	5098163	5098363	-	1	NA	NA	NA	258	NM_001302333	12794	Mm.299737	NM_009920	ENSMUSG00000024873	Cnih2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding	0.085000	0.696517	
mm_114511.1	chr13	72628691	72628891	+	1	NA	NA	NA	-6	NM_010574	16372	Mm.28888	NM_010574	ENSMUSG00000001504	Irx2	-	Iroquois related homeobox 2 (Drosophila)	protein-coding	0.110000	0.691542	
mm_23972.1	chr3	85608230	85608430	+	1	NA	NA	NA	34201	NM_144896	229487	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0.010000	0.442786	
mm_8570.1	chr1	155527044	155527244	-	1	NA	NA	NA	-33	NR_132128	433367	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0.030000	0.457711	
mm_70842.1	chr8	23411834	23412034	+	1	NA	NA	NA	432	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding	0.090000	0.651741	
mm_104041.1	chr11	86306341	86306541	-	1	NA	NA	NA	-48873	NM_027421	70422	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0.000000	0.303483	
mm_90057.1	chr10	116187587	116187787	+	1	NA	NA	NA	10336	NM_001161840	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	0.005000	0.348259	-34(TGCTATAAATGG,-,0.00),45(CCTTTTCAAGAA,+,0.00)
mm_48623.1	chr5	145127957	145128157	-	1	NA	NA	NA	12032	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.000000	0.338308	30(TTCTTTAAAAGG,-,0.00),31(TCTTTAAAAGGC,+,0.00)
mm_157615.1	chrX	53778268	53778468	-	1	NA	NA	NA	-1974	NM_001009549	333473	Mm.327378	NM_001009549	ENSMUSG00000059334	Zfp36l3	AY661338	zinc finger protein 36, C3H type-like 3	protein-coding	0.015000	0.487562	
mm_49766.1	chr6	34863017	34863217	+	1	NA	NA	NA	-29	NM_197986	68487	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.020000	0.457711	
mm_25961.1	chr3	132629854	132630054	+	1	NA	NA	NA	-237	NM_001270430	433653		NM_001270430	ENSMUSG00000091721	Gimd1	EG433653|Gm5549	GIMAP family P-loop NTPase domain containing 1	protein-coding	0.025000	0.402985	
mm_138527.1	chr17	35242249	35242449	+	1	NA	NA	NA	-468	NM_001252457	53817	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	0.050000	0.512438	
mm_86828.1	chr10	21160978	21161178	+	1	NA	NA	NA	-94	NM_010848	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.165000	0.830846	
mm_45375.1	chr5	66052664	66052864	-	1	NA	NA	NA	45415	NM_139065	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.010000	0.447761	-27(CGTTATAAAAAG,-,0.00)
mm_31556.1	chr4	57346576	57346776	+	1	NA	NA	NA	17616	NR_038179	73349	Mm.393774	NR_038178		1700042G15Rik	-	RIKEN cDNA 1700042G15 gene	ncRNA	0.005000	0.437811	-32(CCTTAAATACAC,+,0.00)
mm_121945.1	chr14	24081920	24082120	-	1	NA	NA	NA	-6857	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.005000	0.517413	
mm_39039.1	chr4	152318907	152319107	-	1	NA	NA	NA	-382	NM_001033489	433809	Mm.156205	NM_001033489	ENSMUSG00000058498	Rnf207	D330010C22Rik|Gm143	ring finger protein 207	protein-coding	0.040000	0.582090	
mm_85220.1	chr9	97018653	97018853	-	1	NA	NA	NA	-398	NM_145134	211949	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0.100000	0.746269	
mm_63718.1	chr7	130774090	130774290	+	1	NA	NA	NA	121	NM_001081038	330660	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0.020000	0.562189	
mm_149775.1	chr19	23093808	23094008	+	1	NA	NA	NA	-47318	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.010000	0.457711	
mm_101547.1	chr11	33578761	33578961	-	1	NA	NA	NA	96	NM_146017	216643	Mm.99989	NM_146017	ENSMUSG00000020159	Gabrp	-	gamma-aminobutyric acid (GABA) A receptor, pi	protein-coding	0.020000	0.527363	
mm_74166.1	chr8	123418051	123418251	+	1	NA	NA	NA	6587	NM_023279	22152	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	0.045000	0.577114	
mm_152746.1	chr19	19099675	19099875	-	1	NA	NA	NA	11421	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.005000	0.278607	
mm_3221.1	chr1	135847619	135847819	+	1	NA	NA	NA	6858	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.015000	0.587065	
mm_121063.1	chr14	90556593	90556793	+	1	NA	NA	NA	429802	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA	0.005000	0.328358	
mm_4694.1	chr1	180733078	180733278	+	1	NA	NA	NA	7135	NM_133225	170760	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.010000	0.393035	
mm_70763.1	chr8	21734393	21734593	+	1	NA	NA	NA	-1	NM_001024225	503491	Mm.443396	NM_001024225	ENSMUSG00000064213	Defa24	Defcr24	defensin, alpha, 24	protein-coding	0.005000	0.532338	-33(TCCTATAAATGC,-,0.00)
mm_18445.1	chr2	60905276	60905476	-	1	NA	NA	NA	-23938	NM_001141931	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.010000	0.363184	
mm_52429.1	chr6	113483361	113483561	+	1	NA	NA	NA	-108	NM_133930	171508	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811	cysteine-rich with EGF-like domains 1	protein-coding	0.050000	0.587065	
mm_38294.1	chr4	136892763	136892963	-	1	NA	NA	NA	51	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.020000	0.582090	
mm_141182.1	chr17	26938996	26939196	-	1	NA	NA	NA	362	NR_104458	67675	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	0.035000	0.616915	
mm_1153.1	chr1	60811411	60811611	+	1	NA	NA	NA	65123	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.000000	0.467662	
mm_137498.1	chr17	26971877	26972077	+	1	NA	NA	NA	-1202	NM_001005916	474156	Mm.328890	NM_001005916	ENSMUSG00000079605	Zbtb9	3930402F13Rik	zinc finger and BTB domain containing 9	protein-coding	0.015000	0.447761	
mm_89346.1	chr10	88135813	88136013	+	1	NA	NA	NA	11028	NM_029249	75317	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	0.050000	0.512438	
mm_69749.1	chr7	140955821	140956021	-	1	NA	NA	NA	40	NM_030694	80876	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.025000	0.527363	
mm_161040.1	chr12	32378756	32378956	+	1	NA	NA	NA	67	NM_001162903	72123	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.150000	0.781095	
mm_2461.1	chr1	105356643	105356843	+	1	NA	NA	NA	-33	NM_001160368	320311	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	0.075000	0.706468	
mm_32165.1	chr4	100144978	100145178	+	1	NA	NA	NA	49287	NM_001312690	26563	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding	0.015000	0.373134	30(TTCTCTATAAGG,-,0.00)
mm_153457.1	chr19	41214261	41214461	-	1	NA	NA	NA	-7587	NM_011904	24087	Mm.89983	NM_011904	ENSMUSG00000025013	Tll2	-	tolloid-like 2	protein-coding	0.005000	0.313433	
mm_48082.1	chr5	136883126	136883326	-	1	NA	NA	NA	-11	NM_001346699	140709	Mm.295020	NM_024474	ENSMUSG00000004415	Col26a1	9430032K24Rik|BC002218|Col26a|Emid2|Emu2	collagen, type XXVI, alpha 1	protein-coding	0.065000	0.636816	
mm_19835.1	chr2	112367888	112368088	-	1	NA	NA	NA	39	NM_026519	68032	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	0.090000	0.577114	
mm_120702.1	chr14	70965456	70965656	+	1	NA	NA	NA	75449	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.005000	0.522388	-25(ACATTTAAAAGG,-,0.00)
mm_107771.1	chr12	59131384	59131584	+	1	NA	NA	NA	31	NM_001165253	338320	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.165000	0.810945	
mm_55631.1	chr6	72314672	72314872	-	1	NA	NA	NA	10162	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.005000	0.427861	
mm_123087.1	chr14	55758211	55758411	-	1	NA	NA	NA	113	NM_009894	12684	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	0.000000	0.497512	
mm_99093.1	chr11	99865002	99865202	+	1	NA	NA	NA	626	NM_001177484	100415785	Mm.380213	NM_001177484	ENSMUSG00000090225	Gm11559	OTTMUSG00000002191	predicted gene 11559	protein-coding	0.005000	0.482587	
mm_64619.1	chr7	3629497	3629697	-	1	NA	NA	NA	332	NM_023524	69714	Mm.358730	NM_023524	ENSMUSG00000006335	Tfpt	2400004F01Rik|AI450389|Amida|FB1	TCF3 (E2A) fusion partner	protein-coding	0.030000	0.502488	
mm_122168.1	chr14	31435969	31436169	-	1	NA	NA	NA	31	NM_011894	24056	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.130000	0.746269	
mm_117671.1	chr13	93637503	93637703	-	1	NA	NA	NA	155	NM_016668	12116	Mm.329582	NM_016668	ENSMUSG00000074768	Bhmt	-	betaine-homocysteine methyltransferase	protein-coding	0.020000	0.592040	5(CTGTATAAAGAG,-,0.00)
mm_28888.1	chr3	97868152	97868352	-	1	NA	NA	NA	20455	NM_001289702	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.120000	0.741294	
mm_26992.1	chr3	25748975	25749175	-	1	NA	NA	NA	404232	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.368159	66(TCCTTTAAAAAA,-,0.00)
mm_15632.1	chr2	162987428	162987628	+	1	NA	NA	NA	47	NM_013731	27219	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	0.015000	0.582090	
mm_167646.1	chr9	65141057	65141257	+	1	NA	NA	NA	-32	NM_008988	19289	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0.120000	0.751244	
mm_56027.1	chr6	86607551	86607751	-	1	NA	NA	NA	-20523	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.020000	0.567164	
mm_39732.1	chr5	29195908	29196108	+	1	NA	NA	NA	15	NR_110371	56874	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	0.070000	0.701493	
mm_123772.1	chr14	70279789	70279989	-	1	NA	NA	NA	9608	NM_008915	19057	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	0.005000	0.398010	
mm_11806.1	chr2	43900104	43900304	+	1	NA	NA	NA	151380	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.010000	0.373134	
mm_24648.1	chr3	94386941	94387141	+	1	NA	NA	NA	9609	NR_121656	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.010000	0.477612	
mm_94813.1	chr11	23151985	23152185	+	1	NA	NA	NA	-55	NR_131065	76993	Mm.59224	NR_131065	ENSMUSG00000086366	1700061J23Rik	-	RIKEN cDNA 1700061J23 gene	ncRNA	0.000000	0.502488	
mm_122560.1	chr14	49525623	49525823	-	1	NA	NA	NA	114	NM_029238	75288	Mm.78738	NM_029238	ENSMUSG00000021852	Slc35f4	4930550L21Rik	solute carrier family 35, member F4	protein-coding	0.145000	0.761194	
mm_34838.1	chr4	155396945	155397145	+	1	NA	NA	NA	1024	NM_008072	14403	Mm.388925	NM_008072	ENSMUSG00000029054	Gabrd	AI853201	gamma-aminobutyric acid (GABA) A receptor, subunit delta	protein-coding	0.015000	0.512438	19(CCTCTAAAGGAC,+,0.00)
mm_148388.1	chr19	3384580	3384780	+	1	NA	NA	NA	-4177	NM_001039658	17771	Mm.209941	NM_010841	ENSMUSG00000024905	Mtl5	tesmin	metallothionein-like 5, testis-specific (tesmin)	protein-coding	0.005000	0.527363	
mm_121220.1	chr14	103054909	103055109	+	1	NA	NA	NA	7997	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.045000	0.562189	
mm_26163.1	chr3	138277671	138277871	+	1	NA	NA	NA	126	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.015000	0.487562	
mm_22842.1	chr3	27961714	27961914	+	1	NA	NA	NA	-22357	NM_008875	18805	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.000000	0.442786	
mm_68309.1	chr7	105750183	105750383	-	1	NA	NA	NA	1952	NM_009906	12751	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	0.015000	0.547264	
mm_121806.1	chr14	20269164	20269364	-	1	NA	NA	NA	-102	NM_029006	74571	Mm.105571	NM_029006	ENSMUSG00000023387	Kcnk16	4731413G05Rik|TALK-1|TALK1	potassium channel, subfamily K, member 16	protein-coding	0.010000	0.592040	
mm_152922.1	chr19	28011014	28011214	-	1	NA	NA	NA	52	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.040000	0.572139	
mm_163778.1	chr13	120044119	120044319	+	1	NA	NA	NA	7985	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.000000	0.398010	
mm_113557.1	chr13	38151282	38151482	+	1	NA	NA	NA	88	NM_023842	109620	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding	0.100000	0.721393	
mm_83078.1	chr9	39603520	39603720	-	1	NA	NA	NA	32	NM_001199556	244810	Mm.208855	NM_178737	ENSMUSG00000038112	AW551984	3222402N16	expressed sequence AW551984	protein-coding	0.025000	0.587065	
mm_76078.1	chr8	79248741	79248941	-	1	NA	NA	NA	-258	NM_026315	67687	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.000000	0.417910	
mm_136444.1	chr16	94902194	94902394	-	1	NA	NA	NA	-45604	NM_001025590	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.005000	0.328358	
mm_96380.1	chr11	67243125	67243325	+	1	NA	NA	NA	5413	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.015000	0.417910	
mm_4411.1	chr1	172492086	172492286	+	1	NA	NA	NA	-8060	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.030000	0.592040	
mm_63074.1	chr7	122219312	122219512	+	1	NA	NA	NA	-84	NM_027363	70261	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.030000	0.582090	
mm_63035.1	chr7	121074628	121074828	+	1	NA	NA	NA	-198	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.015000	0.477612	-91(CCATTTAGAGTT,+,0.00)
mm_86452.1	chr10	4339820	4340020	+	1	NA	NA	NA	48188	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.020000	0.383085	
mm_94391.1	chr11	5541783	5541983	+	1	NA	NA	NA	334	NM_134033	104479	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	0.160000	0.776119	
mm_157916.1	chrX	78552721	78552921	-	1	NA	NA	NA	30984	NM_001164275	546336	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	0.000000	0.442786	
mm_62564.1	chr7	104218707	104218907	+	1	NA	NA	NA	12	NM_001013616	94088	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	0.045000	0.597015	
mm_149985.1	chr19	29250532	29250732	+	1	NA	NA	NA	-1171	NM_001048177	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.020000	0.363184	-36(ACGTATATAAGG,-,0.00)
mm_130998.1	chr15	103448360	103448560	-	1	NA	NA	NA	-1	NM_177631	223927	Mm.243718	NM_177631	ENSMUSG00000053508	BC048502	-	cDNA sequence BC048502	protein-coding	0.015000	0.472637	
mm_107121.1	chr12	19175752	19175952	+	1	NA	NA	NA	661342	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.120000	0.741294	
mm_58452.1	chr7	3330283	3330483	+	1	NA	NA	NA	-6202	NM_133189	81904	Mm.214994	NM_133189	ENSMUSG00000069806	Cacng7	-	calcium channel, voltage-dependent, gamma subunit 7	protein-coding	0.045000	0.592040	
mm_22808.1	chr3	27153946	27154146	+	1	NA	NA	NA	20	NR_040548	76657	Mm.417839	NR_040548	ENSMUSG00000097584	1700125G22Rik	-	RIKEN cDNA 1700125G22 gene	ncRNA	0.080000	0.587065	
mm_129683.1	chr15	81408155	81408355	-	1	NA	NA	NA	18	NM_021317	57755	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	0.010000	0.457711	
mm_87050.1	chr10	28808948	28809148	+	1	NA	NA	NA	114459	NR_033601	114676	Mm.390292	NR_033601		4930519F09Rik	-	pyruvate dehydrogenase E1 alpha 1 pseudogene	pseudo	0.010000	0.333333	
mm_162547.1	chr1	170709700	170709900	+	1	NA	NA	NA	65268	NM_177068	320078	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.040000	0.572139	
mm_69515.1	chr7	134938189	134938389	-	1	NA	NA	NA	141	NM_001143802	627214	Mm.323610	NM_001143802	ENSMUSG00000073805	Fam196a	B830028B13Rik	family with sequence similarity 196, member A	protein-coding	0.120000	0.791045	
mm_172354.1	chr7	114706107	114706307	-	1	NA	NA	NA	-12436	NM_054084	116903	Mm.273838	NM_054084	ENSMUSG00000030666	Calcb	CGRP2|Calc2	calcitonin-related polypeptide, beta	protein-coding	0.045000	0.507463	77(TACTTTAAAAGA,-,0.00)
mm_168032.1	chrY	90738523	90738723	+	1	NA	NA	NA	16427	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.477612	
mm_29929.1	chr3	131491292	131491492	-	1	NA	NA	NA	-73376	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.005000	0.368159	
mm_93016.1	chr10	87493559	87493759	-	1	NA	NA	NA	1	NM_008553	17172	Mm.136217	NM_008553	ENSMUSG00000020052	Ascl1	AI225900|ASH1|Mash1|bHLHa46	achaete-scute family bHLH transcription factor 1	protein-coding	0.085000	0.676617	
mm_141482.1	chr17	31198910	31199110	-	1	NA	NA	NA	-36	NM_001163776	140765	Mm.214638	NM_080727	ENSMUSG00000024034	Tmprss3	-	transmembrane protease, serine 3	protein-coding	0.035000	0.522388	
mm_20234.1	chr2	126151859	126152059	-	1	NA	NA	NA	45	NM_029455	75823	Mm.444732	NM_029455	ENSMUSG00000027209	Fam227b	4930525F21Rik	family with sequence similarity 227, member B	protein-coding	0.060000	0.557214	
mm_64326.1	chr7	141997398	141997598	+	1	NA	NA	NA	5319	NR_037291	100526509		NR_037291	ENSMUSG00000092652	Mir3104	mir-3104|mmu-mir-3104	microRNA 3104	ncRNA	0.010000	0.507463	
mm_165906.1	chr4	52462871	52463071	+	1	NA	NA	NA	23750	NM_001301412	14211	Mm.2999	NM_008017	ENSMUSG00000028312	Smc2	5730502P04Rik|AI255214|AW545314|CAP-E|CAPE|Fin16|SMC-2|Smc2l1	structural maintenance of chromosomes 2	protein-coding	0.000000	0.368159	
mm_42709.1	chr5	120431811	120432011	+	1	NA	NA	NA	25	NM_008499	16873	Mm.5151	NM_008499	ENSMUSG00000029595	Lhx5	Lim2	LIM homeobox protein 5	protein-coding	0.120000	0.666667	
mm_53250.1	chr6	127582107	127582307	+	1	NA	NA	NA	4232	NM_001033464	381812	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0.035000	0.557214	
mm_161459.1	chr15	76659723	76659923	+	1	NA	NA	NA	-87	NM_001276335	54151	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0.085000	0.696517	
mm_104396.1	chr11	94499821	94500021	-	1	NA	NA	NA	53	NM_027984	71889	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	0.070000	0.656716	
mm_57417.1	chr6	124911556	124911756	-	1	NA	NA	NA	49	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.030000	0.621891	
mm_5189.1	chr1	13162400	13162600	-	1	NA	NA	NA	-35337	NM_001081209	383491	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0.010000	0.462687	
mm_27361.1	chr3	50429882	50430082	-	1	NA	NA	NA	13631	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.432836	
mm_8919.1	chr1	163313754	163313954	-	1	NA	NA	NA	-204	NM_175686	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.020000	0.427861	
mm_109863.1	chr12	4907298	4907498	-	1	NA	NA	NA	122	NM_145441	217379	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding	0.120000	0.726368	
mm_3834.1	chr1	159930986	159931186	+	1	NA	NA	NA	-113294	NR_028111	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.005000	0.457711	
mm_157739.1	chrX	72918262	72918462	-	1	NA	NA	NA	-18	NM_019405	26370	Mm.24643	NM_019405	ENSMUSG00000031347	Cetn2	1110034A02Rik|AI326150|Calt|caltractin	centrin 2	protein-coding	0.090000	0.621891	
mm_119985.1	chr14	55578261	55578461	+	1	NA	NA	NA	-133	NM_011189	19186	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0.070000	0.696517	
mm_64400.1	chr7	142501517	142501717	+	1	NA	NA	NA	2781	NM_001347551	21957	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	0.020000	0.517413	
mm_31913.1	chr4	85205072	85205272	+	1	NA	NA	NA	-284	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.035000	0.582090	
mm_2129.1	chr1	88055361	88055561	+	1	NA	NA	NA	50	NM_201641	394430	Mm.300095	NM_201641	ENSMUSG00000090165	Ugt1a10	A13|Ugt1a13	UDP glycosyltransferase 1 family, polypeptide A10	protein-coding	0.005000	0.482587	
mm_167294.1	chr8	47249200	47249400	-	1	NA	NA	NA	40102	NM_001286376	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.010000	0.383085	
mm_142922.1	chr17	53845716	53845916	-	1	NA	NA	NA	142	NM_026935	69083	Mm.19320	NM_026935	ENSMUSG00000023122	Sult1c2	1810008N17Rik|ST1C1|ST1C2|Sult1c1	sulfotransferase family, cytosolic, 1C, member 2	protein-coding	0.005000	0.407960	
mm_118832.1	chr14	25607537	25607737	+	1	NA	NA	NA	4124	NM_001309430	100188919	Mm.473810	NM_001309430		Israa	-	immune system released activating agent	protein-coding	0.150000	0.766169	
mm_24992.1	chr3	97158761	97158961	+	1	NA	NA	NA	84	NM_019800	66659	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	0.050000	0.567164	
mm_100861.1	chr11	5878156	5878356	-	1	NA	NA	NA	0	NM_008894	18972	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	0.130000	0.701493	
mm_83215.1	chr9	42120248	42120448	-	1	NA	NA	NA	3941	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.020000	0.502488	
mm_115622.1	chr13	12082555	12082755	-	1	NA	NA	NA	24290	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.020000	0.472637	
mm_104424.1	chr11	94937962	94938162	-	1	NA	NA	NA	1838	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.050000	0.557214	
mm_114966.1	chr13	97128564	97128764	+	1	NA	NA	NA	9262	NM_021552	59050	Mm.390634	NM_021552	ENSMUSG00000060739	Nsa2	5730427N09Rik|LNR42|Nsa2p|Tinp1|Yr29	NSA2 ribosome biogenesis homolog	protein-coding	0.005000	0.273632	
mm_31927.1	chr4	85514222	85514422	+	1	NA	NA	NA	308866	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.085000	0.726368	
mm_38196.1	chr4	135428617	135428817	-	1	NA	NA	NA	5088	NM_022980	53902	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	0.000000	0.338308	48(GTGTAGAAAAGG,-,0.00)
mm_31117.1	chr4	42950387	42950587	+	1	NA	NA	NA	-2607	NM_019874	56323	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.020000	0.572139	
mm_102191.1	chr11	54267178	54267378	-	1	NA	NA	NA	1	NM_010556	16187	Mm.983	NM_010556	ENSMUSG00000018914	Il3	BPA|Csfmu|HCGF|Il-3|MCGF|PSF	interleukin 3	protein-coding	0.020000	0.592040	
mm_59213.1	chr7	24547166	24547366	+	1	NA	NA	NA	116	NM_009532	22594	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	0.105000	0.691542	
mm_39309.1	chr5	8045978	8046178	+	1	NA	NA	NA	0	NM_025618	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.015000	0.462687	
mm_124065.1	chr14	78331994	78332194	-	1	NA	NA	NA	-24051	NM_011613	21943	Mm.249221	NM_011613	ENSMUSG00000022015	Tnfsf11	Ly109l|ODF|OPGL|RANKL|Trance	tumor necrosis factor (ligand) superfamily, member 11	protein-coding	0.000000	0.417910	
mm_365.1	chr1	33908078	33908278	+	1	NA	NA	NA	-47	NM_001276764	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.195000	0.815920	
mm_114526.1	chr13	73496423	73496623	+	1	NA	NA	NA	29140	NM_145376	210992	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.005000	0.467662	
mm_26638.1	chr3	153630827	153631027	+	1	NA	NA	NA	94206	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.005000	0.363184	
mm_130759.1	chr15	101274688	101274888	-	1	NA	NA	NA	7942	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.005000	0.228856	
mm_115508.1	chr13	4279335	4279535	-	1	NA	NA	NA	-36	NM_013777	622402	Mm.27447	NM_013777	ENSMUSG00000021211	Akr1c12	AI266976|Akra	aldo-keto reductase family 1, member C12	protein-coding	0.005000	0.442786	
mm_55073.1	chr6	49110907	49111107	-	1	NA	NA	NA	37212	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.010000	0.577114	
mm_32722.1	chr4	116448582	116448782	+	1	NA	NA	NA	15499	NM_001042743	17776	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0.020000	0.432836	
mm_139983.1	chr17	72836637	72836837	+	1	NA	NA	NA	33	NM_027166	383295	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee-like 5 (Drosophila)	protein-coding	0.110000	0.706468	
mm_14042.1	chr2	122258493	122258693	+	1	NA	NA	NA	23754	NM_146126	20322	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	0.010000	0.482587	
mm_41524.1	chr5	92571433	92571633	+	1	NA	NA	NA	-4	NM_001033478	384198	Mm.76757	NM_001033478	ENSMUSG00000057068	Fam47e	C730043O17|Gm1381	family with sequence similarity 47, member E	protein-coding	0.015000	0.497512	
mm_140865.1	chr17	23771421	23771621	-	1	NA	NA	NA	70	NM_153791	224613	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	0.130000	0.751244	
mm_42172.1	chr5	112261615	112261815	+	1	NA	NA	NA	5895	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.020000	0.472637	
mm_5188.1	chr1	13127136	13127336	-	1	NA	NA	NA	-73	NM_001081209	383491	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0.030000	0.606965	41(CCCTCTTAAAGC,-,0.00),42(CCTCTTAAAGCC,+,0.00)
mm_61469.1	chr7	75612092	75612292	+	1	NA	NA	NA	156658	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.025000	0.557214	
mm_21671.1	chr2	164425568	164425768	-	1	NA	NA	NA	17520	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.010000	0.487562	
mm_59886.1	chr7	30303376	30303576	+	1	NA	NA	NA	-5277	NM_198027	233065	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	0.015000	0.587065	
mm_31395.1	chr4	48045083	48045283	+	1	NA	NA	NA	-122	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.080000	0.646766	
mm_162066.1	chrX	11311807	11312007	+	1	NA	NA	NA	-27	NM_001025260	547160	Mm.350551	NM_001025260	ENSMUSG00000095413	H2al1e	Gm14484|OTTMUSG00000016790	H2A histone family member L1E	protein-coding	0.005000	0.462687	
mm_40976.1	chr5	77036927	77037127	+	1	NA	NA	NA	-18164	NR_077218	68246	Mm.319633	NR_077218	ENSMUSG00000086632	1700112J05Rik	1700110A09Rik	RIKEN cDNA 1700112J05 gene	ncRNA	0.040000	0.547264	
mm_155943.1	chrX	104483078	104483278	+	1	NA	NA	NA	396	NM_001081189	331487	Mm.438275	NM_001081189	ENSMUSG00000073016	Uprt	Gm774	uracil phosphoribosyltransferase	protein-coding	0.055000	0.577114	
mm_142886.1	chr17	51832520	51832720	-	1	NA	NA	NA	27	NM_009122	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.150000	0.741294	-58(CCCTTTAAACGC,+,0.00),-57(CCTTTAAACGCC,+,0.00)
mm_42153.1	chr5	111490840	111491040	+	1	NA	NA	NA	72774	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.020000	0.537313	
mm_11816.1	chr2	44118097	44118297	+	1	NA	NA	NA	-52873	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.005000	0.402985	-45(CTCTATAAATGA,-,0.00),-24(GCATTTAAAAGG,-,0.00)
mm_50984.1	chr6	62638073	62638273	+	1	NA	NA	NA	-618684	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.000000	0.303483	
mm_146117.1	chr18	74283064	74283264	+	1	NA	NA	NA	64	NM_028948	74453	Mm.182293	NM_028948	ENSMUSG00000035394	Cfap53	4933415I03Rik|Ccdc11	cilia and flagella associated protein 53	protein-coding	0.040000	0.567164	
mm_33773.1	chr4	134496787	134496987	+	1	NA	NA	NA	126	NM_001285846	71904	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	0.075000	0.641791	
mm_106316.1	chr11	118302962	118303162	-	1	NA	NA	NA	-12818	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.015000	0.547264	
mm_148049.1	chr18	71255151	71255351	-	1	NA	NA	NA	686959	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.000000	0.328358	
mm_146707.1	chr18	13972418	13972618	-	1	NA	NA	NA	215	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.030000	0.601990	
mm_101337.1	chr11	23519107	23519307	-	1	NA	NA	NA	-12	NM_026105	67358	Mm.87328	NM_026105	ENSMUSG00000020286	1700093K21Rik	-	RIKEN cDNA 1700093K21 gene	protein-coding	0.005000	0.567164	
mm_102886.1	chr11	69411572	69411772	-	1	NA	NA	NA	2003	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.085000	0.676617	
mm_28722.1	chr3	95681378	95681578	-	1	NA	NA	NA	6439	NM_144899	229595	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.030000	0.557214	
mm_90824.1	chr10	7946727	7946927	-	1	NA	NA	NA	9296	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.005000	0.472637	
mm_73373.1	chr8	105623297	105623497	+	1	NA	NA	NA	7931	NR_035492	100316712		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0.015000	0.532338	
mm_93085.1	chr10	89592839	89593039	-	1	NA	NA	NA	6876	NM_001310710	216227	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	0.015000	0.512438	
mm_73126.1	chr8	94810354	94810554	+	1	NA	NA	NA	1	NM_011332	20295	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	0.005000	0.497512	
mm_106753.1	chr12	4133303	4133503	+	1	NA	NA	NA	6	NM_001159536	104111	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.125000	0.781095	
mm_21456.1	chr2	160859536	160859736	-	1	NA	NA	NA	13354	NM_177263	320799	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	0.005000	0.447761	
mm_136919.1	chr17	13779915	13780115	+	1	NA	NA	NA	-18621	NM_022311	21646	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0.005000	0.328358	
mm_38110.1	chr4	134534888	134535088	-	1	NA	NA	NA	280	NM_001256112	76824	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	0.130000	0.751244	
mm_25123.1	chr3	102012349	102012549	+	1	NA	NA	NA	2304	NM_178777	18072	Mm.137286	NM_178777	ENSMUSG00000048540	Nhlh2	6230401I09Rik|Hen2|NSCL2|Nscl-2|bHLHa34	nescient helix loop helix 2	protein-coding	0.040000	0.631841	
mm_64138.1	chr7	141195039	141195239	+	1	NA	NA	NA	-4	NM_153777	70552	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	0.050000	0.582090	
mm_12618.1	chr2	74695170	74695370	+	1	NA	NA	NA	-2493	NM_013555	15438	Mm.26544	NM_013555	ENSMUSG00000043342	Hoxd9	Hox-4.4|Hox-5.2	homeobox D9	protein-coding	0.015000	0.527363	
mm_133595.1	chr16	91464905	91465105	+	1	NA	NA	NA	-99	NR_077219	100503120	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.050000	0.616915	
mm_18736.1	chr2	72996969	72997169	-	1	NA	NA	NA	-16623	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.025000	0.487562	
mm_99881.1	chr11	109426139	109426339	+	1	NA	NA	NA	19	NM_001252193	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.065000	0.626866	
mm_170223.1	chr17	80563923	80564123	+	1	NA	NA	NA	-189	NM_001033443	381113	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.040000	0.552239	-27(GAGTATATAAGA,-,0.00)
mm_119477.1	chr14	47319374	47319574	+	1	NA	NA	NA	21160	NM_178684	218975	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	0.015000	0.383085	
mm_141678.1	chr17	33928118	33928318	-	1	NA	NA	NA	-1676	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.010000	0.427861	
mm_65371.1	chr7	25072874	25073074	-	1	NA	NA	NA	-605	NM_008168	14809	Mm.2879	NM_008168	ENSMUSG00000003378	Grik5	GluK5|GluRgamma2|KA2	glutamate receptor, ionotropic, kainate 5 (gamma 2)	protein-coding	0.080000	0.741294	
mm_23211.1	chr3	41564827	41565027	+	1	NA	NA	NA	47	NM_001130186	269424	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.110000	0.736318	43(GCGTTTAAATAG,-,0.00),45(GTTTAAATAGCA,+,0.00)
mm_54830.1	chr6	42585805	42586005	-	1	NA	NA	NA	11467	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.000000	0.358209	
mm_117049.1	chr13	58385082	58385282	-	1	NA	NA	NA	43	NM_027335	70153	Mm.296610	NM_027335	ENSMUSG00000021550	2210016F16Rik	-	RIKEN cDNA 2210016F16 gene	protein-coding	0.125000	0.691542	
mm_54575.1	chr6	38096960	38097160	-	1	NA	NA	NA	-12293	NM_029921	77522	Mm.387207	NM_029921	ENSMUSG00000029829	Tmem213	D630002J15Rik	transmembrane protein 213	protein-coding	0.015000	0.636816	
mm_49762.1	chr6	34780340	34780540	+	1	NA	NA	NA	8	NM_001289656	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.065000	0.592040	
mm_139441.1	chr17	54420637	54420837	+	1	NA	NA	NA	-50663	NR_045825	69418	Mm.391004	NR_045825	ENSMUSG00000099747	1700025K24Rik	-	RIKEN cDNA 1700025K24 gene	ncRNA	0.025000	0.512438	58(CCCCATAAAAAA,-,0.00)
mm_130229.1	chr15	96285793	96285993	-	1	NA	NA	NA	-1629	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.045000	0.472637	
mm_7079.1	chr1	88277179	88277379	-	1	NA	NA	NA	278	NM_172505	212427	Mm.384762	NM_172505		A730008H23Rik	mFleg1	RIKEN cDNA A730008H23 gene	protein-coding	0.085000	0.671642	
mm_30346.1	chr3	151742274	151742474	-	1	NA	NA	NA	7585	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.000000	0.398010	
mm_37554.1	chr4	126162528	126162728	-	1	NA	NA	NA	37	NM_025856	66938	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	0.035000	0.601990	
mm_50114.1	chr6	41533904	41534104	+	1	NA	NA	NA	12228	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.025000	0.452736	
mm_80860.1	chr9	98490263	98490463	+	1	NA	NA	NA	-174	NM_009034	19660	Mm.12825	NM_009034	ENSMUSG00000032454	Rbp2	Crbp-2|CrbpII|Rbp-2	retinol binding protein 2, cellular	protein-coding	0.010000	0.532338	
mm_139858.1	chr17	69969237	69969437	+	1	NA	NA	NA	264	NM_001347411	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.135000	0.776119	
mm_70032.1	chr7	142576627	142576827	-	1	NA	NA	NA	420	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.025000	0.532338	
mm_61601.1	chr7	80027031	80027231	+	1	NA	NA	NA	903	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.130000	0.766169	
mm_21143.1	chr2	154303747	154303947	-	1	NA	NA	NA	-3397	NM_001025574	433492	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838|OTTMUSG00000015915	BPI fold containing family B, member 9B	protein-coding	0.005000	0.348259	
mm_97783.1	chr11	82434732	82434932	+	1	NA	NA	NA	45932	NM_001304439	270893	Mm.341593	NM_023438	ENSMUSG00000020701	Tmem132e	Gm644	transmembrane protein 132E	protein-coding	0.150000	0.781095	
mm_80832.1	chr9	97016081	97016281	+	1	NA	NA	NA	2174	NM_145134	211949	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0.005000	0.462687	
mm_154679.1	chrX	7919815	7920015	+	1	NA	NA	NA	93	NM_013892	30052	Mm.4881	NM_013892	ENSMUSG00000039278	Pcsk1n	AI848336|KEP|PEN|PEN19|PEN20|Pan3|SAAS|SAASCT|bLEN|lLEN|proSAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding	0.095000	0.711443	
mm_51602.1	chr6	84008710	84008910	+	1	NA	NA	NA	212	NM_001077694	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.065000	0.656716	
mm_47018.1	chr5	115489848	115490048	-	1	NA	NA	NA	-5464	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.060000	0.577114	
mm_40015.1	chr5	33104328	33104528	+	1	NA	NA	NA	209	NM_019810	20537	Mm.25237	NM_019810	ENSMUSG00000011034	Slc5a1	Sglt1	solute carrier family 5 (sodium/glucose cotransporter), member 1	protein-coding	0.090000	0.641791	
mm_130561.1	chr15	99287080	99287280	-	1	NA	NA	NA	0	NM_001081254	545136	Mm.324745	NM_001081254	ENSMUSG00000078907	Fam186b	EG545136	family with sequence similarity 186, member B	protein-coding	0.005000	0.517413	
mm_121079.1	chr14	99046349	99046549	+	1	NA	NA	NA	72	NM_175265	77744	Mm.23503	NM_175265	ENSMUSG00000022070	Bora	6720463M24Rik|AI317232	bora, aurora kinase A activator	protein-coding	0.085000	0.661692	
mm_33785.1	chr4	134922542	134922742	+	1	NA	NA	NA	-983	NM_023665	27981	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.005000	0.447761	
mm_104328.1	chr11	93968203	93968403	-	1	NA	NA	NA	218	NM_008704	18102	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	0.090000	0.616915	
mm_133776.1	chr16	94732026	94732226	+	1	NA	NA	NA	120707	NM_001347731	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.005000	0.353234	
mm_87814.1	chr10	60301949	60302149	+	1	NA	NA	NA	17588	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.005000	0.532338	62(GGCCTTTAGAGC,-,0.00),63(GCCTTTAGAGCG,+,0.00)
mm_100497.1	chr11	120479505	120479705	+	1	NA	NA	NA	-5064	NM_027204	56282	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	0.050000	0.597015	
mm_47760.1	chr5	131438716	131438916	-	1	NA	NA	NA	-131294	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.040000	0.462687	
mm_104970.1	chr11	100204192	100204392	-	1	NA	NA	NA	1738	NM_001313957	16664	Mm.439898	NM_016958	ENSMUSG00000045545	Krt14	AI626930|CK-14|K14|Krt-1.14|Krt1-14	keratin 14	protein-coding	0.025000	0.557214	
mm_136944.1	chr17	14398932	14399132	+	1	NA	NA	NA	-90	NR_027986	74917	Mm.32228	NM_183107		4930474M22Rik	-	RIKEN cDNA 4930474M22 gene	ncRNA	0.005000	0.353234	-64(AGCTTTAAAAGA,-,0.00),-63(GCTTTAAAAGAA,+,0.00)
mm_52962.1	chr6	123123459	123123659	+	1	NA	NA	NA	243	NM_001170333	26888	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0.005000	0.388060	
mm_171047.1	chr3	102436275	102436475	-	1	NA	NA	NA	-33544	NM_001112698	18049	Mm.1259	NM_013609	ENSMUSG00000027859	Ngf	Ngfb	nerve growth factor	protein-coding	0.030000	0.452736	
mm_135128.1	chr16	35843864	35844064	-	1	NA	NA	NA	27418	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.000000	0.432836	
mm_90663.1	chr10	128819572	128819772	+	1	NA	NA	NA	1959	NM_024180	66844	Mm.235562	NM_024180	ENSMUSG00000025353	Ormdl2	0610012C09Rik	ORM1-like 2 (S. cerevisiae)	protein-coding	0.005000	0.383085	
mm_156427.1	chrX	140957146	140957346	+	1	NA	NA	NA	-535	NM_001164177	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	0.005000	0.482587	
mm_61582.1	chr7	79859121	79859321	+	1	NA	NA	NA	-16869	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.025000	0.557214	
mm_24652.1	chr3	94398437	94398637	+	1	NA	NA	NA	-682	NM_177250	320747	Mm.213001	NM_177250	ENSMUSG00000044505	Lingo4	A530050P17Rik|LERN4|Lrrn6d	leucine rich repeat and Ig domain containing 4	protein-coding	0.015000	0.393035	
mm_114135.1	chr13	55223039	55223239	+	1	NA	NA	NA	13357	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.005000	0.368159	
mm_142794.1	chr17	50190161	50190361	-	1	NA	NA	NA	236	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.140000	0.756219	
mm_132414.1	chr16	35068442	35068642	+	1	NA	NA	NA	46121	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.000000	0.412935	
mm_171875.1	chr5	30220865	30221065	+	1	NA	NA	NA	-11616	NM_027652	28042	Mm.168854	NM_027652	ENSMUSG00000075703	Selenoi	4933402G07Rik|AI448296|AI452230|C79563|D5Wsu178e|Ept1|SELI|mKIAA1724	selenoprotein I	protein-coding	0.030000	0.522388	
mm_173020.1	chrX	101429633	101429833	+	1	NA	NA	NA	82	NM_001252518	53610	Mm.280069	NM_023144	ENSMUSG00000031311	Nono	AA407051|AV149256|NRB54|P54NRB|nonA	non-POU-domain-containing, octamer binding protein	protein-coding	0.090000	0.646766	
mm_39067.1	chr4	154081928	154082128	-	1	NA	NA	NA	15145	NM_001126330	22062	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0.005000	0.582090	
mm_105186.1	chr11	101973884	101974084	-	1	NA	NA	NA	-6969	NM_024449	74499	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0.010000	0.447761	
mm_80394.1	chr9	75775605	75775805	+	1	NA	NA	NA	340	NM_007555	12160	Mm.428950	NM_007555	ENSMUSG00000032179	Bmp5	AU023399|se	bone morphogenetic protein 5	protein-coding	0.010000	0.388060	
mm_150403.1	chr19	36833087	36833287	+	1	NA	NA	NA	-1045	NM_001163635	74493	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0.020000	0.552239	
mm_65471.1	chr7	25477488	25477688	-	1	NA	NA	NA	37	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.005000	0.592040	
mm_100254.1	chr11	117331448	117331648	+	1	NA	NA	NA	-167	NM_017380	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.010000	0.616915	
mm_104311.1	chr11	93859633	93859833	-	1	NA	NA	NA	26033	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.000000	0.373134	-48(GGCTTTTAAAAC,-,0.00),-47(GCTTTTAAAACT,+,0.00)
mm_142598.1	chr17	46763620	46763820	-	1	NA	NA	NA	-8	NM_011195	19208	Mm.215173	NM_011195	ENSMUSG00000036858	Ptcra	gp33|pT-alpha|pT-alpha-TCR|pT[a]|pTa|pTalpha	pre T cell antigen receptor alpha	protein-coding	0.000000	0.626866	
mm_7033.1	chr1	87099641	87099841	-	1	NA	NA	NA	1865	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.020000	0.527363	
mm_140742.1	chr17	15829792	15829992	-	1	NA	NA	NA	-3306	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.020000	0.522388	
mm_91128.1	chr10	19592659	19592859	-	1	NA	NA	NA	810	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.015000	0.492537	
mm_171883.1	chr5	33018878	33019078	+	1	NA	NA	NA	162	NM_011738	22629	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.180000	0.771144	
mm_1011.1	chr1	58727156	58727356	+	1	NA	NA	NA	-3296	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.000000	0.437811	
mm_2614.1	chr1	120485749	120485949	+	1	NA	NA	NA	19235	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.005000	0.527363	
mm_36548.1	chr4	86672302	86672502	-	1	NA	NA	NA	-2343	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.015000	0.477612	-19(CTTTTTCTGGGC,+,0.00)
mm_78729.1	chr9	41580983	41581183	+	1	NA	NA	NA	-170	NR_015483	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.025000	0.402985	
mm_152071.1	chr19	6542985	6543185	-	1	NA	NA	NA	-15	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.010000	0.457711	
mm_110717.1	chr12	69541641	69541841	-	1	NA	NA	NA	41287	NM_001033236	207965	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0.015000	0.507463	
mm_61299.1	chr7	67679155	67679355	+	1	NA	NA	NA	31845	NM_025905	67009	Mm.249356	NM_025905	ENSMUSG00000030555	Ttc23	1600012K10Rik	tetratricopeptide repeat domain 23	protein-coding	0.025000	0.482587	
mm_73394.1	chr8	105827636	105827836	+	1	NA	NA	NA	-8	NM_024445	72236	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	0.045000	0.601990	
mm_1880.1	chr1	85649935	85650135	+	1	NA	NA	NA	47	NM_001313714	20684	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.020000	0.557214	
mm_36097.1	chr4	58545612	58545812	-	1	NA	NA	NA	7581	NM_172989	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.015000	0.472637	
mm_64681.1	chr7	4509936	4510136	-	1	NA	NA	NA	5939	NM_001277903	21955	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0.060000	0.592040	
mm_99238.1	chr11	101073950	101074150	+	1	NA	NA	NA	3956	NM_013792	27419	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.030000	0.567164	
mm_169363.1	chr14	31917525	31917725	-	1	NA	NA	NA	-87210	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.050000	0.532338	-28(TTCTATAAAAGT,-,0.00)
mm_10450.1	chr2	14276183	14276383	+	1	NA	NA	NA	15280	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.015000	0.412935	-6(GCGTTTATAGGG,-,0.00)
mm_140925.1	chr17	24220623	24220823	-	1	NA	NA	NA	46	NM_028056	72016	Mm.23881	NM_028056	ENSMUSG00000024118	1600002H07Rik	-	RIKEN cDNA 1600002H07 gene	protein-coding	0.080000	0.606965	
mm_115694.1	chr13	14063151	14063351	-	1	NA	NA	NA	237	NM_001331119	14593	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	0.065000	0.597015	
mm_68174.1	chr7	103827656	103827856	-	1	NA	NA	NA	172	NM_001201391	100503605	Mm.288567	NM_001201391	ENSMUSG00000052305	Hbb-bs	Beta-s|Hbbt1|Hbbt2	hemoglobin, beta adult s chain	protein-coding	0.010000	0.537313	76(CCCTTTTTAGGC,-,0.00)
mm_157472.1	chrX	48034441	48034641	-	1	NA	NA	NA	312	NM_013912	30878	Mm.29262	NM_013912	ENSMUSG00000037010	Apln	6030430G11Rik|Apel	apelin	protein-coding	0.110000	0.706468	
mm_153137.1	chr19	34244995	34245195	-	1	NA	NA	NA	10278	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.035000	0.482587	
mm_140770.1	chr17	17625236	17625436	-	1	NA	NA	NA	-847	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.080000	0.631841	
mm_92458.1	chr10	77902345	77902545	-	1	NA	NA	NA	91	NM_145152	237387	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.115000	0.746269	
mm_163049.1	chr11	57963570	57963770	-	1	NA	NA	NA	-45394	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.010000	0.611940	
mm_66668.1	chr7	45725659	45725859	-	1	NA	NA	NA	57	NM_027055	69363	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	0.025000	0.597015	
mm_53713.1	chr6	143213675	143213875	+	1	NA	NA	NA	-32113	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.005000	0.363184	
mm_69927.1	chr7	141918397	141918597	-	1	NA	NA	NA	-16036	NM_001347562	54473	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	0.005000	0.477612	
mm_69508.1	chr7	134413721	134413921	-	1	NA	NA	NA	-36993	NM_001081331	71007	Mm.334285	NM_001081331	ENSMUSG00000030994	D7Ertd443e	4933400E14Rik|FATS|Gm497	DNA segment, Chr 7, ERATO Doi 443, expressed	protein-coding	0.010000	0.592040	
mm_114669.1	chr13	78235085	78235285	+	1	NA	NA	NA	-36312	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.005000	0.417910	
mm_136231.1	chr16	90284355	90284555	-	1	NA	NA	NA	48	NM_178923	224432	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.120000	0.746269	
mm_121954.1	chr14	24369716	24369916	-	1	NA	NA	NA	76452	NM_001033214	105418	Mm.2077	NM_001033214	ENSMUSG00000038925	E330034G19Rik	AA415275|Zpac	RIKEN cDNA E330034G19 gene	protein-coding	0.015000	0.477612	-66(CCCTTTAAATGA,-,0.00),-4(GGGTCTAAAAGC,-,0.00)
mm_114694.1	chr13	81786765	81786965	+	1	NA	NA	NA	3573	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.000000	0.348259	
mm_81265.1	chr9	108049197	108049397	+	1	NA	NA	NA	7	NM_177910	331026	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	0.080000	0.651741	
mm_134455.1	chr16	18411730	18411930	-	1	NA	NA	NA	1664	NM_001111063	12846	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.035000	0.606965	
mm_98425.1	chr11	94644819	94645019	+	1	NA	NA	NA	8835	NM_177752	268465	Mm.358937	NM_177752	ENSMUSG00000039055	Eme1	6820428D13	essential meiotic structure-specific endonuclease 1	protein-coding	0.005000	0.517413	
mm_56219.1	chr6	89415820	89416020	-	1	NA	NA	NA	-53307	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.015000	0.422886	
mm_111551.1	chr12	101028929	101029129	-	1	NA	NA	NA	-46	NM_026681	68339	Mm.156217	NM_026681	ENSMUSG00000021182	Ccdc88c	0610010D24Rik|AV000935|AW324073|Daple|mKIAA1509	coiled-coil domain containing 88C	protein-coding	0.130000	0.800995	
mm_139261.1	chr17	47761350	47761550	+	1	NA	NA	NA	23519	NM_001161723	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.010000	0.537313	
mm_88966.1	chr10	81394994	81395194	+	1	NA	NA	NA	2030	NM_001099917	72273	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.005000	0.587065	
mm_156680.1	chrX	159364076	159364276	+	1	NA	NA	NA	-8019	NM_025437	66235	Mm.294623	NM_025437	ENSMUSG00000067194	Eif1ax	1500010B24Rik|AI426898|Eif1ay	eukaryotic translation initiation factor 1A, X-linked	protein-coding	0.010000	0.442786	
mm_15680.1	chr2	163570200	163570400	+	1	NA	NA	NA	23145	NM_008261	15378	Mm.202383	NM_008261	ENSMUSG00000017950	Hnf4a	HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14	hepatic nuclear factor 4, alpha	protein-coding	0.040000	0.582090	
mm_86160.1	chr9	118150105	118150305	-	1	NA	NA	NA	-9	NM_026442	67899	Mm.9953	NM_026442	ENSMUSG00000039163	Cmc1	2010110K16Rik|2010312P05Rik|AI596001	COX assembly mitochondrial protein 1	protein-coding	0.110000	0.681592	
mm_43520.1	chr5	137150957	137151157	+	1	NA	NA	NA	-34850	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.492537	
mm_30383.1	chr3	152243920	152244120	-	1	NA	NA	NA	22300	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.000000	0.288557	
mm_84502.1	chr9	66919578	66919778	-	1	NA	NA	NA	27	NM_173413	235442	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.100000	0.681592	
mm_42723.1	chr5	120588911	120589111	+	1	NA	NA	NA	-12	NM_029408	75732	Mm.425285	NM_029408	ENSMUSG00000029601	Iqcd	4933433C09Rik|AI662646	IQ motif containing D	protein-coding	0.045000	0.507463	
mm_23509.1	chr3	60529620	60529820	+	1	NA	NA	NA	28541	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.030000	0.417910	
mm_70845.1	chr8	23446653	23446853	+	1	NA	NA	NA	35251	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding	0.030000	0.482587	-50(TTTTTTAAGGGC,+,0.00)
mm_79504.1	chr9	57333972	57334172	+	1	NA	NA	NA	-56998	NR_040729	73772	Mm.444684	NR_040729		4930430J02Rik	-	RIKEN cDNA 4930430J02 gene	ncRNA	0.050000	0.522388	
mm_84400.1	chr9	65552279	65552479	-	1	NA	NA	NA	27708	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.010000	0.497512	
mm_32113.1	chr4	98923842	98924042	+	1	NA	NA	NA	132	NM_146144	230484	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	0.145000	0.741294	
mm_96633.1	chr11	69323990	69324190	+	1	NA	NA	NA	104	NM_001024206	245828	Mm.28073	NM_001024206	ENSMUSG00000049299	Trappc1	BET5|D11Ertd172e|MUM2	trafficking protein particle complex 1	protein-coding	0.035000	0.532338	-72(GGCTTTATAAAC,-,0.00),-70(CTTTATAAACCG,+,0.00)
mm_41551.1	chr5	92939826	92940026	+	1	NA	NA	NA	41933	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.035000	0.522388	-33(GGATTTATAAGC,-,0.00)
mm_45730.1	chr5	86197830	86198030	-	1	NA	NA	NA	-29	NM_001310651	14715	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	0.030000	0.398010	
mm_69790.1	chr7	141096739	141096939	-	1	NA	NA	NA	3707	NM_023059	24058	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0.025000	0.562189	
mm_77844.1	chr9	5299339	5299539	+	1	NA	NA	NA	922	NM_009807	12362	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.005000	0.402985	14(GTCTCTAAAAAA,-,0.00)
mm_173222.1	chrX	74943948	74944148	+	1	NA	NA	NA	25077	NM_001251890	100503280	Mm.483559	NM_001251890		Gm38425	-	predicted gene, 38425	protein-coding	0.035000	0.547264	
mm_18362.1	chr2	58743425	58743625	-	1	NA	NA	NA	-11659	NM_001289659	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.005000	0.457711	
mm_84503.1	chr9	66975323	66975523	-	1	NA	NA	NA	61	NM_030717	80907	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0.100000	0.721393	
mm_137203.1	chr17	23941822	23942022	+	1	NA	NA	NA	-74	NM_011321	20234	Mm.390958	NM_011321	ENSMUSG00000024128	Sbp	AV082137|AV082259|p25	spermine binding protein	protein-coding	0.010000	0.517413	41(GGATATAAAGGG,-,0.00)
mm_119284.1	chr14	34376351	34376551	+	1	NA	NA	NA	947	NM_153127	105450	Mm.272673	NM_153127	ENSMUSG00000041445	Mmrn2	AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1	multimerin 2	protein-coding	0.015000	0.572139	
mm_37525.1	chr4	124738691	124738891	-	1	NA	NA	NA	-3059	NM_008385	16330	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	0.000000	0.537313	
mm_159096.1	chr2	35696605	35696805	+	1	NA	NA	NA	-27	NM_001290639	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.005000	0.482587	-75(GGCCCTTTAAGA,-,0.00),-74(GCCCTTTAAGAG,-,0.00),-73(CCCTTTAAGAGA,-,0.00),-72(CCTTTAAGAGAA,+,0.00)
mm_122072.1	chr14	30596444	30596644	-	1	NA	NA	NA	13766	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.005000	0.402985	
mm_125878.1	chr15	75634117	75634317	+	1	NA	NA	NA	17533	NM_011759	22701	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0.030000	0.477612	
mm_26217.1	chr3	138793251	138793451	+	1	NA	NA	NA	51143	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.005000	0.452736	
mm_129930.1	chr15	84557664	84557864	-	1	NA	NA	NA	59	NM_177630	223732	Mm.6471	NM_177630	ENSMUSG00000055745	Ldoc1l	BC058638|Mar6|Mart6	leucine zipper, down-regulated in cancer 1-like	protein-coding	0.110000	0.716418	
mm_48689.1	chr5	146762992	146763192	-	1	NA	NA	NA	31864	NM_011669	22217	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.010000	0.378109	
mm_22710.1	chr3	19187992	19188192	+	1	NA	NA	NA	-129	NM_026182	67472	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.100000	0.681592	
mm_140988.1	chr17	24849870	24850070	-	1	NA	NA	NA	332	NM_023480	68636	Mm.347964	NM_023480	ENSMUSG00000045316	Fahd1	1110025H10Rik|AV002085	fumarylacetoacetate hydrolase domain containing 1	protein-coding	0.080000	0.592040	
mm_68916.1	chr7	126460822	126461022	-	1	NA	NA	NA	2151	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.010000	0.572139	
mm_14859.1	chr2	148781961	148782161	+	1	NA	NA	NA	52	NM_030135	78609	Mm.160102	NM_030135	ENSMUSG00000027444	8030411F24Rik	Cst14	RIKEN cDNA 8030411F24 gene	protein-coding	0.005000	0.532338	-38(GAGCCTAAAAGG,-,0.00),-36(GCCTAAAAGGGC,+,0.00)
mm_103002.1	chr11	69693559	69693759	-	1	NA	NA	NA	2439	NM_011614	21944	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0.025000	0.562189	
mm_55019.1	chr6	48840952	48841152	-	1	NA	NA	NA	-64	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.010000	0.597015	
mm_163055.1	chr11	59541323	59541523	-	1	NA	NA	NA	-1263	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.020000	0.487562	
mm_97864.1	chr11	83116887	83117087	+	1	NA	NA	NA	142	NM_011407	20555	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0.020000	0.552239	
mm_78125.1	chr9	20646569	20646769	+	1	NA	NA	NA	1845	NM_001310746	66177	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.020000	0.477612	
mm_139355.1	chr17	50513107	50513307	+	1	NA	NA	NA	3660	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.010000	0.303483	
mm_154696.1	chrX	8132106	8132306	+	1	NA	NA	NA	652	NM_001290783	73447	Mm.284162	NM_026137	ENSMUSG00000031166	Wdr13	1700060B08Rik|5730411P10Rik|DXHXS7467e|W51679|mMg21	WD repeat domain 13	protein-coding	0.050000	0.592040	
mm_69084.1	chr7	127016517	127016717	-	1	NA	NA	NA	735	NM_030240	67278	Mm.345385	NM_030240	ENSMUSG00000030680	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0.075000	0.656716	
mm_42288.1	chr5	114380502	114380702	+	1	NA	NA	NA	-18	NM_001331219	117146	Mm.28792	NM_054093	ENSMUSG00000029577	Ube3b	AI449831|AU020130	ubiquitin protein ligase E3B	protein-coding	0.075000	0.646766	-29(CTTCTTAAAGCG,+,0.00)
mm_152823.1	chr19	23136393	23136593	-	1	NA	NA	NA	-4733	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.030000	0.507463	-34(GCACATAAAGGG,-,0.00)
mm_139565.1	chr17	56990241	56990441	+	1	NA	NA	NA	77	NM_017393	53895	Mm.287892	NM_017393	ENSMUSG00000002660	Clpp	AU019820|D17Wsu160e	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding	0.080000	0.636816	
mm_157537.1	chrX	51146315	51146515	-	1	NA	NA	NA	59575	NM_001310515	171170	Mm.295324	NM_134163	ENSMUSG00000036109	Mbnl3	A530038J18Rik|AI661274|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL	muscleblind-like 3 (Drosophila)	protein-coding	0.015000	0.507463	
mm_70441.1	chr8	11727856	11728056	+	1	NA	NA	NA	-149	NM_001113517	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.190000	0.815920	
mm_27540.1	chr3	57576362	57576562	-	1	NA	NA	NA	-552	NM_001168281	97064	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0.060000	0.522388	
mm_150937.1	chr19	46305877	46306077	+	1	NA	NA	NA	47	NM_001177370	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.050000	0.597015	
mm_158353.1	chrX	134583474	134583674	-	1	NA	NA	NA	-434	NM_013482	12229	Mm.4475	NM_013482	ENSMUSG00000031264	Btk	AI528679|xid	Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.010000	0.472637	63(CCTTAAAGACAC,+,0.00)
mm_37518.1	chr4	124451199	124451399	-	1	NA	NA	NA	34660	NR_040774	78460	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA	0.010000	0.587065	
mm_7115.1	chr1	90014396	90014596	-	1	NA	NA	NA	81	NM_139152	208372	Mm.215164	NM_139152	ENSMUSG00000067081	Asb18	Asb-18	ankyrin repeat and SOCS box-containing 18	protein-coding	0.025000	0.547264	
mm_113006.1	chr13	21866206	21866406	+	1	NA	NA	NA	30743	NR_035500	100316716		NR_035500	ENSMUSG00000088148	Mir1983	mmu-mir-1983	microRNA 1983	ncRNA	0.005000	0.487562	-34(CCCTATATAAAG,-,0.00)
mm_62775.1	chr7	112374752	112374952	+	1	NA	NA	NA	6544	NM_027587	100504195	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	0.010000	0.512438	
mm_113251.1	chr13	27637478	27637678	+	1	NA	NA	NA	4915	NM_001164058	19113	Mm.196424	NM_008930	ENSMUSG00000006488	Prl7a1	AA407021|AA409971|AA410116|PLP-E|PLP-G|Prlpe|Prlpg	prolactin family 7, subfamily a, member 1	protein-coding	0.005000	0.402985	
mm_1807.1	chr1	81077161	81077361	+	1	NA	NA	NA	-56	NM_172849	241134	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	0.010000	0.537313	
mm_97145.1	chr11	75452622	75452822	+	1	NA	NA	NA	1995	NM_138950	192652	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0.020000	0.562189	
mm_165259.1	chr2	72970540	72970740	+	1	NA	NA	NA	8641	NM_001098425	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.005000	0.427861	
mm_32405.1	chr4	106923154	106923354	+	1	NA	NA	NA	11784	NM_023672	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.015000	0.512438	
mm_10426.1	chr2	13582554	13582754	+	1	NA	NA	NA	8343	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.020000	0.333333	80(CTTTTTAAAGTA,+,0.00)
mm_92689.1	chr10	80656995	80657195	-	1	NA	NA	NA	-24	NM_145361	208198	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0.015000	0.606965	
mm_85654.1	chr9	107661925	107662125	-	1	NA	NA	NA	5374	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.000000	0.522388	
mm_171388.1	chr4	121866991	121867191	+	1	NA	NA	NA	-244966	NM_001099309	666927	Mm.465133	NM_001099309	ENSMUSG00000078575	Gm12887	OTTMUSG00000008910	predicted gene 12887	protein-coding	0.000000	0.288557	
mm_142127.1	chr17	35897295	35897495	-	1	NA	NA	NA	-17	NM_001033630	69662	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	0.135000	0.766169	
mm_110824.1	chr12	72489989	72490189	-	1	NA	NA	NA	-46268	NM_026327	67708	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	0.010000	0.452736	-33(GCCTTTATAAAC,+,0.00),-33(GCCTTTATAAAC,-,0.00),-31(CTTTATAAACTG,+,0.00)
mm_89929.1	chr10	111233448	111233648	+	1	NA	NA	NA	-65131	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.025000	0.373134	
mm_83260.1	chr9	42457489	42457689	-	1	NA	NA	NA	14637	NM_173038	272589	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0.035000	0.537313	
mm_78155.1	chr9	21025395	21025595	+	1	NA	NA	NA	-3878	NM_023892	78369	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.030000	0.587065	
mm_39826.1	chr5	30798196	30798396	+	1	NA	NA	NA	-16345	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.010000	0.487562	
mm_133040.1	chr16	57443293	57443493	+	1	NA	NA	NA	90116	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.005000	0.402985	
mm_57384.1	chr6	124817947	124818147	-	1	NA	NA	NA	-3751	NM_009415	21991	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.020000	0.507463	
mm_172655.1	chr8	36953087	36953287	-	1	NA	NA	NA	-745	NM_001194940	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.010000	0.472637	
mm_156874.1	chrX	164980592	164980792	+	1	NA	NA	NA	100	NM_175027	237211	Mm.336317	NM_175027	ENSMUSG00000047757	Fancb	BC022692	Fanconi anemia, complementation group B	protein-coding	0.045000	0.597015	
mm_143308.1	chr17	66042465	66042665	-	1	NA	NA	NA	34481	NM_001025572	106585	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	0.010000	0.407960	
mm_44069.1	chr5	148652984	148653184	+	1	NA	NA	NA	-88756	NR_028285	70138	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.010000	0.552239	
mm_6864.1	chr1	84278353	84278553	-	1	NA	NA	NA	6192	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.010000	0.388060	
mm_9819.1	chr1	182282673	182282873	-	1	NA	NA	NA	-14	NM_007853	13244	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.130000	0.741294	
mm_134069.1	chr16	8660525	8660725	-	1	NA	NA	NA	11528	NM_025821	52502	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.025000	0.537313	-93(GCATTAAAAGCA,+,0.00)
mm_19011.1	chr2	76905523	76905723	-	1	NA	NA	NA	76924	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.015000	0.353234	
mm_22687.1	chr3	17789824	17790024	+	1	NA	NA	NA	3	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.015000	0.537313	
mm_137707.1	chr17	29098686	29098886	+	1	NA	NA	NA	5017	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.040000	0.616915	
mm_114047.1	chr13	54192029	54192229	+	1	NA	NA	NA	0	NM_001010973	15466	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	-	histamine receptor H2	protein-coding	0.085000	0.661692	
mm_70181.1	chr7	143766822	143767022	-	1	NA	NA	NA	71	NM_203492	381974	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	0.015000	0.562189	
mm_74089.1	chr8	122564692	122564892	+	1	NA	NA	NA	-3223	NM_026014	67177	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0.030000	0.527363	
mm_131867.1	chr16	23157241	23157441	+	1	NA	NA	NA	10805	NM_009605	11450	Mm.3969	NM_009605	ENSMUSG00000022878	Adipoq	30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1	adiponectin, C1Q and collagen domain containing	protein-coding	0.030000	0.452736	
mm_78784.1	chr9	44022270	44022470	+	1	NA	NA	NA	-21014	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.000000	0.487562	
mm_141947.1	chr17	35066100	35066300	-	1	NA	NA	NA	-16	NM_001191012	106722	Mm.390956	NM_001033221	ENSMUSG00000073414	G6b	AU023871|C6orf25|Ng31	immunoreceptor tyrosine-based inhibitory motif (ITIM) containing platelet receptor	protein-coding	0.030000	0.616915	
mm_28536.1	chr3	92720284	92720484	-	1	NA	NA	NA	-34	NM_026394	67828	Mm.158176	NM_026394	ENSMUSG00000042124	Lce1f	1110055J05Rik	late cornified envelope 1F	protein-coding	0.010000	0.462687	
mm_92729.1	chr10	80843946	80844146	-	1	NA	NA	NA	-7	NM_001013758	237403	Mm.40213	NM_001013758	ENSMUSG00000051067	Lingo3	AI851712|LERN2	leucine rich repeat and Ig domain containing 3	protein-coding	0.165000	0.786070	
mm_33629.1	chr4	132794972	132795172	+	1	NA	NA	NA	1292	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.020000	0.537313	
mm_37013.1	chr4	112774766	112774966	-	1	NA	NA	NA	-5	NM_177668	230613	Mm.122553	NM_177668	ENSMUSG00000048766	Skint10	A030001H23Rik|Gm570	selection and upkeep of intraepithelial T cells 10	protein-coding	0.005000	0.398010	
mm_66180.1	chr7	34037371	34037571	-	1	NA	NA	NA	15904	NM_009596	11354	Mm.8025	NM_009596	ENSMUSG00000066583	Scgb1b27	Abp|Abpa|Abpa27|Sal-1|Tcp	secretoglobin, family 1B, member 27	protein-coding	0.030000	0.412935	
mm_126954.1	chr15	92161353	92161553	+	1	NA	NA	NA	96	NM_001159647	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.015000	0.487562	
mm_8212.1	chr1	138136441	138136641	-	1	NA	NA	NA	38585	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.045000	0.502488	-33(TCCTATAAAGAC,+,0.00),-33(TCCTATAAAGAC,-,0.00)
mm_143426.1	chr17	70849703	70849903	-	1	NA	NA	NA	-13	NM_001164076	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.080000	0.572139	
mm_16016.1	chr2	167443666	167443866	+	1	NA	NA	NA	22056	NM_001304542	77031	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.000000	0.383085	67(TGGTATTAAAAG,-,0.00),78(GCCTATAAAAAA,-,0.00)
mm_152875.1	chr19	24514709	24514909	-	1	NA	NA	NA	-37335	NM_026520	68034	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding	0.010000	0.437811	
mm_133898.1	chr16	97543796	97543996	+	1	NA	NA	NA	7813	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.000000	0.447761	
mm_134987.1	chr16	32143080	32143280	-	1	NA	NA	NA	22296	NM_146069	224109	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.030000	0.567164	
mm_164104.1	chr15	25425927	25426127	+	1	NA	NA	NA	11835	NR_027376	432939	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0.010000	0.452736	
mm_71048.1	chr8	33694504	33694704	+	1	NA	NA	NA	-37310	NM_001167921	68153	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	0.005000	0.363184	-51(TAGTATTAAAGG,-,0.00)
mm_74249.1	chr8	124831663	124831863	+	1	NA	NA	NA	31266	NM_025615	66523	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	0.030000	0.626866	
mm_152078.1	chr19	6857393	6857593	-	1	NA	NA	NA	718	NM_001081291	78317	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.025000	0.587065	
mm_145174.1	chr18	46958766	46958966	+	1	NA	NA	NA	-10	NM_178377	69456	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2	COMM domain containing 10	protein-coding	0.110000	0.691542	
mm_7859.1	chr1	132528923	132529123	-	1	NA	NA	NA	13917	NM_177129	21367	Mm.260861	NM_011531	ENSMUSG00000053024	Cntn2	D130012K04Rik|TAG-1|Tax	contactin 2	protein-coding	0.020000	0.562189	
mm_58.1	chr1	6544916	6545116	+	1	NA	NA	NA	57785	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.407960	
mm_41677.1	chr5	99906169	99906369	+	1	NA	NA	NA	72669	NM_001077266	11991	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.095000	0.651741	
mm_146505.1	chr18	3309797	3309997	-	1	NA	NA	NA	-10341	NM_001110853	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.020000	0.437811	
mm_145278.1	chr18	53147780	53147980	+	1	NA	NA	NA	-28485	NM_026386	67804	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.015000	0.452736	
mm_138769.1	chr17	37082808	37083008	+	1	NA	NA	NA	3328	NM_146477	258469	Mm.271392	NM_146477	ENSMUSG00000056600	Olfr90	MOR256-21|bM573K1.2	olfactory receptor 90	protein-coding	0.005000	0.407960	
mm_23680.1	chr3	68617928	68618128	+	1	NA	NA	NA	45660	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.020000	0.452736	49(ACCTCTTTAAGG,-,0.00),51(CTCTTTAAGGAG,+,0.00)
mm_170257.1	chr18	14065525	14065725	-	1	NA	NA	NA	-92892	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.030000	0.502488	
mm_141398.1	chr17	29261875	29262075	-	1	NA	NA	NA	1996	NM_026845	68816	Mm.328928	NM_026845	ENSMUSG00000024007	Ppil1	1110060O10Rik|AI327391|Cypl1	peptidylprolyl isomerase (cyclophilin)-like 1	protein-coding	0.030000	0.567164	
mm_132532.1	chr16	37868094	37868294	+	1	NA	NA	NA	-206	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.110000	0.741294	-34(CACTATAAAGGG,-,0.00)
mm_114025.1	chr13	52634188	52634388	+	1	NA	NA	NA	37406	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.015000	0.457711	
mm_23391.1	chr3	57433687	57433887	+	1	NA	NA	NA	8377	NM_145539	229302	Mm.26618	NM_145539	ENSMUSG00000027801	Tm4sf4	Iltmp	transmembrane 4 superfamily member 4	protein-coding	0.015000	0.467662	
mm_164050.1	chr14	102811100	102811300	-	1	NA	NA	NA	171432	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.015000	0.447761	
mm_89478.1	chr10	93554764	93554964	+	1	NA	NA	NA	14232	NM_175488	237465	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	0.030000	0.517413	
mm_66757.1	chr7	46714420	46714620	-	1	NA	NA	NA	1156	NM_011315	20210	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	0.010000	0.398010	16(CCCTTTAAGGAA,+,0.00)
mm_166918.1	chr7	30515133	30515333	+	1	NA	NA	NA	111	NR_036630	100504207	Mm.297831	NM_001004161	ENSMUSG00000062132	Arhgap33os	Gm1082	Rho GTPase activating protein 33, opposite strand	ncRNA	0.030000	0.582090	
mm_114331.1	chr13	60646817	60647017	+	1	NA	NA	NA	44706	NM_134062	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.000000	0.323383	
mm_48094.1	chr5	137061828	137062028	-	1	NA	NA	NA	10344	NM_008871	18787	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.015000	0.487562	
mm_134288.1	chr16	14217901	14218101	-	1	NA	NA	NA	54726	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.015000	0.427861	
mm_90353.1	chr10	127165198	127165398	+	1	NA	NA	NA	142	NM_001244617	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.120000	0.711443	
mm_157750.1	chrX	73491319	73491519	-	1	NA	NA	NA	7818	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.010000	0.507463	
mm_38968.1	chr4	150902037	150902237	-	1	NA	NA	NA	7784	NM_020569	57320	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.020000	0.512438	
mm_118154.1	chr13	105249709	105249909	-	1	NA	NA	NA	43205	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.035000	0.601990	
mm_67250.1	chr7	75455291	75455491	-	1	NA	NA	NA	-143	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.030000	0.547264	
mm_20610.1	chr2	131847543	131847743	-	1	NA	NA	NA	13	NR_029381	414081	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	0.010000	0.552239	
mm_21018.1	chr2	152397759	152397959	-	1	NA	NA	NA	187	NM_011438	20667	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.155000	0.800995	
mm_28405.1	chr3	90242991	90243191	-	1	NA	NA	NA	52	NM_001307934	78284	Mm.299952	NM_030080	ENSMUSG00000027938	Creb3l4	1700012K17Rik|5330432F22Rik|AIBZIP|AV040530|AV258827|CREB4|JAL|TISP40|acre1	cAMP responsive element binding protein 3-like 4	protein-coding	0.025000	0.522388	
mm_75041.1	chr8	32673602	32673802	-	1	NA	NA	NA	276324	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding	0.000000	0.338308	
mm_40682.1	chr5	65541853	65542053	+	1	NA	NA	NA	4708	NM_001310619	53323	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.010000	0.398010	
mm_42083.1	chr5	110176782	110176982	+	1	NA	NA	NA	181	NM_008146	269682	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	0.085000	0.661692	
mm_154010.1	chr19	53064380	53064580	-	1	NA	NA	NA	-11772	NR_045320	78457	Mm.76932	NR_045320	ENSMUSG00000099988	1700054A03Rik	-	RIKEN cDNA 1700054A03 gene	ncRNA	0.035000	0.547264	
mm_93815.1	chr10	121426471	121426671	-	1	NA	NA	NA	49679	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.000000	0.338308	
mm_96954.1	chr11	70607007	70607207	+	1	NA	NA	NA	-8787	NM_001145537	668433	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.030000	0.621891	
mm_108441.1	chr12	82373053	82373253	+	1	NA	NA	NA	61804	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.010000	0.353234	
mm_48118.1	chr5	137138994	137139194	-	1	NA	NA	NA	-22887	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.025000	0.502488	
mm_166438.1	chr5	137207671	137207871	-	1	NA	NA	NA	-80483	NM_009599	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.015000	0.547264	
mm_41694.1	chr5	100650540	100650740	+	1	NA	NA	NA	23616	NM_027978	71883	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0.010000	0.417910	
mm_65794.1	chr7	28898015	28898215	-	1	NA	NA	NA	16459	NM_001110807	60594	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	0.015000	0.587065	
mm_56429.1	chr6	97312008	97312208	-	1	NA	NA	NA	-59328	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.045000	0.527363	
mm_79745.1	chr9	62367322	62367522	+	1	NA	NA	NA	26079	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.035000	0.477612	
mm_97773.1	chr11	82057822	82058022	+	1	NA	NA	NA	90	NM_011330	20292	Mm.4686	NM_011330	ENSMUSG00000020676	Ccl11	Scya11|eotaxin	chemokine (C-C motif) ligand 11	protein-coding	0.015000	0.547264	-37(CTCCCTATAAAG,-,0.00),-35(CCCTATAAAGCT,+,0.00)
mm_88614.1	chr10	79826028	79826228	+	1	NA	NA	NA	5107	NM_030218	78906	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.020000	0.611940	
mm_170153.1	chr17	45571075	45571275	-	1	NA	NA	NA	2086	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.025000	0.467662	
mm_158796.1	chrX	167241415	167241615	-	1	NA	NA	NA	22814	NM_001313761	170744	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	0.000000	0.313433	
mm_60304.1	chr7	44097350	44097550	+	1	NA	NA	NA	-4842	NM_010642	16616	Mm.443292	NM_010642	ENSMUSG00000066516	Klk1b21	Klk21|mGk-21	kallikrein 1-related peptidase b21	protein-coding	0.005000	0.497512	
mm_63563.1	chr7	128113109	128113309	+	1	NA	NA	NA	-16359	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.010000	0.517413	
mm_109898.1	chr12	7901511	7901711	-	1	NA	NA	NA	-76066	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.030000	0.577114	
mm_9713.1	chr1	179802991	179803191	-	1	NA	NA	NA	924	NM_026375	226747	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.150000	0.746269	
mm_96343.1	chr11	66954995	66955195	+	1	NA	NA	NA	-1543	NR_130645	71576	Mm.340077	NR_130315	ENSMUSG00000085683	9130409J20Rik	-	RIKEN cDNA 9130409J20 gene	ncRNA	0.010000	0.467662	
mm_43315.1	chr5	134946050	134946250	+	1	NA	NA	NA	784	NM_009903	12740	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	0.055000	0.601990	
mm_90625.1	chr10	128459144	128459344	+	1	NA	NA	NA	8	NM_001114097	68094	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	0.170000	0.830846	
mm_49193.1	chr6	15186724	15186924	+	1	NA	NA	NA	1318	NM_001286607	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.010000	0.427861	-60(TTTTTAATGGGC,+,0.00)
mm_53188.1	chr6	125481874	125482074	+	1	NA	NA	NA	12781	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.010000	0.437811	
mm_147001.1	chr18	34372412	34372612	-	1	NA	NA	NA	903	NM_007874	13476	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0.035000	0.562189	
mm_80872.1	chr9	98864781	98864981	+	1	NA	NA	NA	114	NM_028033	71979	Mm.140843	NM_028033	ENSMUSG00000090470	Prr23a3	2410012M07Rik	proline rich 23A, member 3	protein-coding	0.080000	0.601990	
mm_19663.1	chr2	103281187	103281387	-	1	NA	NA	NA	21909	NM_007914	13661	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding	0.010000	0.497512	
mm_4122.1	chr1	169693581	169693781	+	1	NA	NA	NA	38180	NM_009063	19737	Mm.20954	NM_009063	ENSMUSG00000026678	Rgs5	1110070A02Rik	regulator of G-protein signaling 5	protein-coding	0.010000	0.422886	-77(TCTTTTAAATCC,+,0.00)
mm_138246.1	chr17	34589715	34589915	+	1	NA	NA	NA	9	NM_134116	106512	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.025000	0.557214	
mm_60874.1	chr7	46033670	46033870	+	1	NA	NA	NA	74	NM_153057	211548	Mm.274811	NM_153057	ENSMUSG00000030835	Nomo1	D7Ertd156e|Nomo|pM5	nodal modulator 1	protein-coding	0.130000	0.776119	
mm_48804.1	chr5	148959467	148959667	-	1	NA	NA	NA	9317	NR_040686	71473	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	0.050000	0.681592	
mm_17209.1	chr2	25477966	25478166	-	1	NA	NA	NA	-8317	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.000000	0.562189	
mm_9465.1	chr1	173333277	173333477	-	1	NA	NA	NA	126	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	0.005000	0.487562	
mm_36104.1	chr4	58797499	58797699	-	1	NA	NA	NA	-11879	NM_146920	258922	Mm.223327	NM_146920	ENSMUSG00000043385	Olfr267	MOR262-1	olfactory receptor 267	protein-coding	0.000000	0.363184	
mm_105834.1	chr11	113514456	113514656	-	1	NA	NA	NA	51259	NM_001166503	69806	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0.005000	0.393035	
mm_109183.1	chr12	108472796	108472996	+	1	NA	NA	NA	50080	NM_001043335	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.000000	0.427861	
mm_76062.1	chr8	77947740	77947940	-	1	NA	NA	NA	-223388	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	0.010000	0.457711	
mm_44656.1	chr5	28210321	28210521	-	1	NA	NA	NA	-253	NM_001310511	269637	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.065000	0.527363	
mm_10125.1	chr2	3749850	3750050	+	1	NA	NA	NA	36492	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.015000	0.427861	
mm_165576.1	chr3	26302147	26302347	+	1	NA	NA	NA	29662	NM_138666	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.407960	
mm_61415.1	chr7	73586385	73586585	+	1	NA	NA	NA	-28090	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.030000	0.537313	-43(CCTTTTCTGCGG,+,0.00)
mm_131216.1	chr16	8831003	8831203	+	1	NA	NA	NA	1003	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.090000	0.651741	
mm_168203.1	chr10	69895442	69895642	+	1	NA	NA	NA	-29990	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.020000	0.497512	
mm_33146.1	chr4	125150704	125150904	+	1	NA	NA	NA	-22923	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.030000	0.616915	
mm_83511.1	chr9	45984736	45984936	-	1	NA	NA	NA	35	NM_008775	18475	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0.125000	0.726368	
mm_152515.1	chr19	11279553	11279753	-	1	NA	NA	NA	4160	NM_183190	269063	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	0.010000	0.492537	
mm_39085.1	chr4	154636132	154636332	-	1	NA	NA	NA	135	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	0.085000	0.681592	
mm_30205.1	chr3	144720309	144720509	-	1	NA	NA	NA	-74	NM_001282037	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.120000	0.751244	
mm_101952.1	chr11	50292233	50292433	-	1	NA	NA	NA	3	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.095000	0.646766	
mm_81966.1	chr9	120955067	120955267	+	1	NA	NA	NA	81	NR_106058	102465661		NR_106058	ENSMUSG00000106193	Mir7090	mmu-mir-7090	microRNA 7090	ncRNA	0.010000	0.467662	
mm_120601.1	chr14	70079301	70079501	+	1	NA	NA	NA	1606	NM_001289927	13655	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.035000	0.577114	
mm_926.1	chr1	55226517	55226717	+	1	NA	NA	NA	165	NM_028713	74013	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	0.035000	0.497512	
mm_78543.1	chr9	35305225	35305425	+	1	NA	NA	NA	24220	NR_040715	71133	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.025000	0.358209	
mm_100543.1	chr11	120673607	120673807	+	1	NA	NA	NA	734	NM_026877	68938	Mm.294020	NM_026877	ENSMUSG00000025142	Aspscr1	1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG	alveolar soft part sarcoma chromosome region, candidate 1 (human)	protein-coding	0.030000	0.502488	
mm_76934.1	chr8	105938338	105938538	-	1	NA	NA	NA	-46	NM_013640	19171	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0.015000	0.502488	84(TACTTTTAAGGG,-,0.00),85(ACTTTTAAGGGG,+,0.00)
mm_6261.1	chr1	69108456	69108656	-	1	NA	NA	NA	-497	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	0.020000	0.517413	
mm_65102.1	chr7	19303464	19303664	-	1	NA	NA	NA	6481	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.020000	0.482587	
mm_154087.1	chr19	56746672	56746872	-	1	NA	NA	NA	24400	NM_007419	11554	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.040000	0.562189	
mm_106819.1	chr12	7983021	7983221	+	1	NA	NA	NA	5444	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.452736	
mm_49906.1	chr6	38983210	38983410	+	1	NA	NA	NA	64324	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.020000	0.457711	
mm_141255.1	chr17	27596732	27596932	-	1	NA	NA	NA	26132	NM_001291046	56409	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0.025000	0.532338	
mm_115453.1	chr13	118714920	118715120	+	1	NA	NA	NA	321	NM_008002	14165	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	0.030000	0.547264	
mm_145939.1	chr18	67308484	67308684	+	1	NA	NA	NA	19361	NM_053261	114663	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0.040000	0.527363	
mm_92614.1	chr10	80139097	80139297	-	1	NA	NA	NA	170	NR_036582	100503659	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.125000	0.736318	
mm_92912.1	chr10	83636218	83636418	-	1	NA	NA	NA	12346	NM_145220	216190	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.010000	0.442786	
mm_57005.1	chr6	121081499	121081699	-	1	NA	NA	NA	28	NM_153396	194401	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0.020000	0.577114	
mm_165300.1	chr2	92375672	92375872	+	1	NA	NA	NA	533	NM_145122	18633	Mm.202782	NM_145122	ENSMUSG00000027222	Pex16	-	peroxisomal biogenesis factor 16	protein-coding	0.030000	0.552239	
mm_170176.1	chr17	57839142	57839342	-	1	NA	NA	NA	69672	NM_001081653	620292	Mm.391030	NM_001081653	ENSMUSG00000038048	Cntnap5c	Caspr5-3|EG620292|Gm325	contactin associated protein-like 5C	protein-coding	0.020000	0.487562	
mm_88903.1	chr10	81177723	81177923	+	1	NA	NA	NA	-1138	NR_028549	100217454		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.055000	0.601990	
mm_60716.1	chr7	45324842	45325042	+	1	NA	NA	NA	-16	NR_110499	100040970	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	ENSMUSG00000046721|Gm9811	ribosomal protein L14, pseudogene 1	pseudo	0.045000	0.577114	
mm_19391.1	chr2	91430608	91430808	-	1	NA	NA	NA	13934	NM_175123	228356	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	0.020000	0.552239	
mm_23228.1	chr3	50406928	50407128	+	1	NA	NA	NA	36585	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.437811	
mm_65075.1	chr7	19118243	19118443	-	1	NA	NA	NA	-1516	NM_175530	243867	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0.140000	0.746269	
mm_76188.1	chr8	82402529	82402729	-	1	NA	NA	NA	-43	NM_008357	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.030000	0.582090	
mm_54325.1	chr6	30505870	30506070	-	1	NA	NA	NA	3803	NM_001347087	72649	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	0.010000	0.417910	
mm_67074.1	chr7	68249486	68249686	-	1	NA	NA	NA	14647	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.015000	0.467662	
mm_97959.1	chr11	83740552	83740752	+	1	NA	NA	NA	-6288	NM_183249	66107	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.010000	0.402985	
mm_87512.1	chr10	52417937	52418137	+	1	NA	NA	NA	490	NM_030250	52014	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.110000	0.716418	
mm_28299.1	chr3	89160079	89160279	-	1	NA	NA	NA	-22	NM_008227	15168	Mm.389461	NM_008227	ENSMUSG00000028051	Hcn3	BCNG-4|Bcng4|Hac3|Hcn4	hyperpolarization-activated, cyclic nucleotide-gated K+ 3	protein-coding	0.105000	0.771144	
mm_140754.1	chr17	17410754	17410954	-	1	NA	NA	NA	8168	NM_025681	66643	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.005000	0.547264	-36(CACTATAAAAGG,-,0.00)
mm_129512.1	chr15	79062583	79062783	-	1	NA	NA	NA	176	NM_144849	223690	Mm.24262	NM_144849	ENSMUSG00000033055	Ankrd54	C730048E16Rik|EST1068184|EST475269|Liar	ankyrin repeat domain 54	protein-coding	0.160000	0.751244	
mm_3297.1	chr1	136692756	136692956	+	1	NA	NA	NA	-3355	NR_037986	100503474	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0.020000	0.497512	
mm_73486.1	chr8	107031223	107031423	+	1	NA	NA	NA	-3	NM_126165	116733	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0.110000	0.726368	
mm_171863.1	chr5	23347170	23347370	-	1	NA	NA	NA	87083	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.005000	0.467662	
mm_170012.1	chr17	17234762	17234962	+	1	NA	NA	NA	-59581	NM_001324550	100862203	Mm.484235	NM_001324550		Gm6712	EG626854	predicted gene 6712	protein-coding	0.035000	0.507463	
mm_55953.1	chr6	85374448	85374648	-	1	NA	NA	NA	86	NM_177466	52055	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0.110000	0.751244	
mm_87368.1	chr10	44170355	44170555	+	1	NA	NA	NA	8	NR_001582	70365	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	0.025000	0.522388	
mm_45441.1	chr5	67425062	67425262	-	1	NA	NA	NA	2637	NM_001164806	666938	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.005000	0.398010	
mm_109091.1	chr12	104761533	104761733	+	1	NA	NA	NA	-9681	NM_148948	192119	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	0.025000	0.532338	
mm_166001.1	chr4	115847750	115847950	+	1	NA	NA	NA	8652	NM_001285487	17346	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0.015000	0.527363	
mm_71282.1	chr8	40919977	40920177	+	1	NA	NA	NA	-6156	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.010000	0.348259	
mm_154306.1	chr19	61226259	61226459	-	1	NA	NA	NA	2059	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.110000	0.666667	
mm_128661.1	chr15	60129900	60130100	-	1	NA	NA	NA	-113382	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.010000	0.268657	
mm_36747.1	chr4	101162843	101163043	-	1	NA	NA	NA	93905	NM_183024	242570	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.015000	0.507463	
mm_27533.1	chr3	57554910	57555110	-	1	NA	NA	NA	20866	NM_133784	97064	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0.015000	0.383085	
mm_84548.1	chr9	67485093	67485293	-	1	NA	NA	NA	74510	NM_001081242	70549	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	0.000000	0.542289	
mm_41908.1	chr5	105589693	105589893	+	1	NA	NA	NA	70322	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.005000	0.422886	
mm_139431.1	chr17	53567218	53567418	+	1	NA	NA	NA	347	NM_020005	18519	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.125000	0.830846	
mm_112025.1	chr12	111454913	111455113	-	1	NA	NA	NA	12352	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.005000	0.388060	
mm_164381.1	chr16	31297402	31297602	+	1	NA	NA	NA	17306	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.015000	0.457711	
mm_105139.1	chr11	101459613	101459813	-	1	NA	NA	NA	6486	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.040000	0.597015	
mm_51514.1	chr6	83137758	83137958	+	1	NA	NA	NA	774	NM_009106	20166	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0.010000	0.597015	
mm_93118.1	chr10	91170368	91170568	-	1	NA	NA	NA	82	NM_001283048	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.050000	0.437811	
mm_59617.1	chr7	28147070	28147270	+	1	NA	NA	NA	17704	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.020000	0.577114	
mm_34165.1	chr4	139623012	139623212	+	1	NA	NA	NA	218	NM_175438	212647	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	0.080000	0.671642	
mm_140217.1	chr17	83846516	83846716	+	1	NA	NA	NA	174	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.035000	0.552239	
mm_85274.1	chr9	99436610	99436810	-	1	NA	NA	NA	2	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.170000	0.820896	
mm_60849.1	chr7	45813931	45814131	+	1	NA	NA	NA	285	NM_011181	19158	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0.155000	0.766169	
mm_58899.1	chr7	17150173	17150373	+	1	NA	NA	NA	-127	NM_054059	384557	Mm.486145	NM_054059	ENSMUSG00000053228	Ceacam3	EG384557|Psg24|cea12	carcinoembryonic antigen-related cell adhesion molecule 3	protein-coding	0.000000	0.562189	
mm_100625.1	chr11	121702360	121702560	+	1	NA	NA	NA	33	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.100000	0.691542	
mm_127439.1	chr15	101270252	101270452	+	1	NA	NA	NA	3506	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.065000	0.621891	
mm_169074.1	chr13	30377026	30377226	+	1	NA	NA	NA	40770	NM_177322	11607	Mm.35062	NM_177322	ENSMUSG00000049115	Agtr1a	1810074K20Rik|AG2S|AI551199|AT1|AT1a|AT2R1|AT2R1A|Agtr-1a|Agtr1|Angtr-1a	angiotensin II receptor, type 1a	protein-coding	0.045000	0.487562	
mm_152478.1	chr19	11037564	11037764	-	1	NA	NA	NA	12902	NR_102366	107350	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.000000	0.378109	
mm_164000.1	chr14	65683394	65683594	+	1	NA	NA	NA	17091	NM_001168318	71145	Mm.83840	NM_028903	ENSMUSG00000022032	Scara5	4932433F15Rik|4933425F03Rik|AV278087|Tesr	scavenger receptor class A, member 5	protein-coding	0.000000	0.477612	
mm_108483.1	chr12	83663999	83664199	+	1	NA	NA	NA	-24464	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.080000	0.477612	
mm_3467.1	chr1	150104362	150104562	+	1	NA	NA	NA	4431	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.482587	
mm_4893.1	chr1	189034689	189034889	+	1	NA	NA	NA	-26949	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.015000	0.487562	
mm_47147.1	chr5	120560326	120560526	-	1	NA	NA	NA	28187	NM_145853	252972	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.020000	0.562189	
mm_126551.1	chr15	82063806	82064006	+	1	NA	NA	NA	4755	NM_001166475	328573	Mm.399189	NM_001166475	ENSMUSG00000075524	4930407I10Rik	Gm747	RIKEN cDNA 4930407I10 gene	protein-coding	0.020000	0.477612	
mm_157137.1	chrX	9459116	9459316	-	1	NA	NA	NA	10108	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.398010	
mm_82513.1	chr9	20521301	20521501	-	1	NA	NA	NA	18	NM_001135019	77519	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	0.095000	0.636816	
mm_154889.1	chrX	20806406	20806606	+	1	NA	NA	NA	-42037	NM_009703	11836	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	0.000000	0.477612	
mm_28559.1	chr3	93443788	93443988	-	1	NA	NA	NA	1558	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.055000	0.562189	
mm_80179.1	chr9	72275393	72275593	+	1	NA	NA	NA	605	NM_001311105	235469	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	0.050000	0.567164	
mm_74211.1	chr8	123896109	123896309	+	1	NA	NA	NA	-1434	NM_009606	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.015000	0.532338	
mm_25384.1	chr3	107215856	107216056	+	1	NA	NA	NA	5776	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.005000	0.492537	
mm_70754.1	chr8	19688989	19689189	+	1	NA	NA	NA	-40487	NM_001270553	100861668	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.005000	0.368159	
mm_147486.1	chr18	47306372	47306572	-	1	NA	NA	NA	62396	NM_018744	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.025000	0.497512	
mm_94865.1	chr11	24077987	24078187	+	1	NA	NA	NA	31	NM_001159289	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.030000	0.512438	
mm_45189.1	chr5	52115811	52116011	-	1	NA	NA	NA	20106	NR_105845	102466648		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0.135000	0.696517	
mm_123354.1	chr14	63142439	63142639	-	1	NA	NA	NA	20077	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.015000	0.562189	
mm_112915.1	chr13	20923014	20923214	+	1	NA	NA	NA	129001	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.417910	
mm_92862.1	chr10	81597249	81597449	-	1	NA	NA	NA	3551	NM_053254	114606	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0.015000	0.601990	
mm_78203.1	chr9	21411739	21411939	+	1	NA	NA	NA	2	NM_021888	60507	Mm.436579	NM_021888	ENSMUSG00000002825	Qtrt1	2610028E17Rik|Tgt	queuine tRNA-ribosyltransferase 1	protein-coding	0.085000	0.616915	
mm_130667.1	chr15	100674384	100674584	-	1	NA	NA	NA	-4984	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.000000	0.432836	
mm_15.1	chr1	4857932	4858132	+	1	NA	NA	NA	-296	NM_001159751	21399	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.125000	0.716418	
mm_137387.1	chr17	25808922	25809122	+	1	NA	NA	NA	-63	NM_001164225	214931	Mm.152289	NM_001164225	ENSMUSG00000025738	Fbxl16	BC042620|Scirr1	F-box and leucine-rich repeat protein 16	protein-coding	0.145000	0.776119	-27(GCTCTTAGGGCC,+,0.00)
mm_131844.1	chr16	23050126	23050326	+	1	NA	NA	NA	-8074	NM_023125	16644	Mm.2160	NM_023125	ENSMUSG00000022875	Kng1	Kng	kininogen 1	protein-coding	0.020000	0.492537	
mm_120395.1	chr14	64652440	64652640	+	1	NA	NA	NA	9	NM_001081177	16554	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.100000	0.686567	
mm_26710.1	chr3	157947403	157947603	+	1	NA	NA	NA	37	NM_001013806	433667	Mm.265806	NM_001013806	ENSMUSG00000039988	Ankrd13c	AI505652|AU022220	ankyrin repeat domain 13c	protein-coding	0.150000	0.751244	
mm_93312.1	chr10	98880712	98880912	-	1	NA	NA	NA	-34340	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.000000	0.393035	
mm_66884.1	chr7	59217581	59217781	-	1	NA	NA	NA	-11069	NM_173010	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|mKIAA4216	ubiquitin protein ligase E3A	protein-coding	0.010000	0.422886	-6(CACCATATAGGG,-,0.00)
mm_156513.1	chrX	150552060	150552260	+	1	NA	NA	NA	-4715	NR_106147	102465782		NR_106147	ENSMUSG00000099172	Mir3620	Gm27984|mmu-mir-3620	microRNA 3620	ncRNA	0.005000	0.487562	
mm_87656.1	chr10	58478194	58478394	+	1	NA	NA	NA	-19643	NM_001162956	76138	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.000000	0.452736	
mm_173299.1	chrY	5157281	5157481	+	1	NA	NA	NA	1385708	NM_011253	19657	Mm.4711	NM_011253	ENSMUSG00000094658	Rbmy	RBM|Rbm1|Rbm1-rs1|Rbmy1a1|Rbmy1a1-rs1|Rbmy1b	RNA binding motif protein, Y chromosome	protein-coding	0.010000	0.537313	
mm_156703.1	chrX	159588234	159588434	+	1	NA	NA	NA	-38938	NM_001135727	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.020000	0.527363	-31(GCCTATTAAAAC,-,0.00)
mm_39292.1	chr5	4344611	4344811	+	1	NA	NA	NA	152344	NM_001042670	208595	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	ENSMUSG00000053178|Gm9897	mitochondrial transcription termination factor 1b	protein-coding	0.010000	0.487562	
mm_125722.1	chr15	73091355	73091555	+	1	NA	NA	NA	1043	NM_053068	93696	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0.005000	0.358209	
mm_222.1	chr1	17145294	17145494	+	1	NA	NA	NA	21	NM_010267	14545	Mm.18218	NM_010267	ENSMUSG00000025777	Gdap1	-	ganglioside-induced differentiation-associated-protein 1	protein-coding	0.035000	0.557214	
mm_93763.1	chr10	120198555	120198755	-	1	NA	NA	NA	2882	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.010000	0.472637	-82(TCCTATTTAAAG,-,0.00),-80(CTATTTAAAGGG,+,0.00),-80(CTATTTAAAGGG,-,0.00)
mm_106092.1	chr11	116198240	116198440	-	1	NA	NA	NA	-515	NM_027107	69535	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	0.025000	0.477612	
mm_169649.1	chr15	53574266	53574466	+	1	NA	NA	NA	-228183	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.065000	0.661692	
mm_44685.1	chr5	30120678	30120878	-	1	NA	NA	NA	-14692	NM_001256263	433868	Mm.450696	NM_001256263	ENSMUSG00000086815	3110082J24Rik	ENSMUSG00000073106	RIKEN cDNA 3110082J24 gene	protein-coding	0.010000	0.457711	
mm_9614.1	chr1	176213876	176214076	-	1	NA	NA	NA	-34	NM_001195816	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	0.035000	0.517413	
mm_94471.1	chr11	6528809	6529009	+	1	NA	NA	NA	-149	NR_045893	100041286	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974|OTTMUSG00000005115	small nucleolar RNA host gene 15	ncRNA	0.085000	0.646766	
mm_10335.1	chr2	11642692	11642892	+	1	NA	NA	NA	0	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.005000	0.378109	28(GCTTAAATAGAA,+,0.00),62(TTGTCTAAAAGC,-,0.00)
mm_138850.1	chr17	40811057	40811257	+	1	NA	NA	NA	8	NM_011269	19743	Mm.12961	NM_011269	ENSMUSG00000023926	Rhag	CD241|Rh50|Rh50A	Rhesus blood group-associated A glycoprotein	protein-coding	0.000000	0.432836	
mm_97320.1	chr11	76904394	76904594	+	1	NA	NA	NA	-51	NM_025655	66601	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.010000	0.402985	
mm_49814.1	chr6	36389336	36389536	+	1	NA	NA	NA	-1202	NR_015589	319472	Mm.226434	NR_015589	ENSMUSG00000073154	9330158H04Rik	-	RIKEN cDNA 9330158H04 gene	ncRNA	0.030000	0.587065	
mm_3978.1	chr1	164249018	164249218	+	1	NA	NA	NA	72	NM_001276455	116914	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA	solute carrier family 19 (thiamine transporter), member 2	protein-coding	0.140000	0.766169	
mm_80375.1	chr9	75407993	75408193	+	1	NA	NA	NA	1266	NM_027418	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.035000	0.532338	35(TCTTTAAAACCG,+,0.00)
mm_77543.1	chr8	123158182	123158382	-	1	NA	NA	NA	-2	NM_020564	57429	Mm.6562	NM_020564	ENSMUSG00000000739	Sult5a1	Sult-x1|Sultx1	sulfotransferase family 5A, member 1	protein-coding	0.025000	0.626866	
mm_57514.1	chr6	125481733	125481933	-	1	NA	NA	NA	12922	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.020000	0.502488	
mm_157249.1	chrX	19148902	19149102	-	1	NA	NA	NA	-2031	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.005000	0.407960	
mm_52953.1	chr6	123049886	123050086	+	1	NA	NA	NA	24	NM_001190310	69810	Mm.333374	NM_027218	ENSMUSG00000030147	Clec4b1	1810046I24Rik|Aplra2|Clec4b|DCAR|DCARbeta|Dcar2	C-type lectin domain family 4, member b1	protein-coding	0.000000	0.407960	
mm_131976.1	chr16	24982909	24983109	+	1	NA	NA	NA	-76630	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.005000	0.427861	
mm_29961.1	chr3	133333997	133334197	-	1	NA	NA	NA	23987	NM_146141	74776	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0.040000	0.552239	
mm_163614.1	chr13	52179491	52179691	+	1	NA	NA	NA	82850	NR_045061	74050	Mm.84860	NR_045061		4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.010000	0.363184	
mm_736.1	chr1	43447117	43447317	+	1	NA	NA	NA	1466	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.000000	0.388060	
mm_139608.1	chr17	57311763	57311963	+	1	NA	NA	NA	32763	NM_001163815	22324	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.045000	0.587065	
mm_93176.1	chr10	93539842	93540042	-	1	NA	NA	NA	91	NM_027908	71761	Mm.244518	NM_027908	ENSMUSG00000015890	Amdhd1	1300019J08Rik	amidohydrolase domain containing 1	protein-coding	0.100000	0.721393	
mm_35656.1	chr4	43558016	43558216	-	1	NA	NA	NA	4467	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.020000	0.611940	
mm_120957.1	chr14	77519854	77520054	+	1	NA	NA	NA	-13086	NR_033141	629678	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	0.000000	0.437811	
mm_50762.1	chr6	53573557	53573757	+	1	NA	NA	NA	283	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.025000	0.537313	
mm_67299.1	chr7	79148952	79149152	-	1	NA	NA	NA	8	NM_001045489	17304	Mm.1451	NM_008594	ENSMUSG00000030605	Mfge8	AA408458|AI325141|MFG-E8|MP47|Mfgm|P47|SED1|lactadherin	milk fat globule-EGF factor 8 protein	protein-coding	0.090000	0.676617	
mm_20659.1	chr2	132111403	132111603	-	1	NA	NA	NA	33605	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.020000	0.482587	
mm_490.1	chr1	36770323	36770523	+	1	NA	NA	NA	3489	NM_001289765	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.010000	0.432836	82(TCTTTAAAACCC,+,0.00)
mm_68941.1	chr7	126503252	126503452	-	1	NA	NA	NA	-50	NM_183020	233871	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.160000	0.756219	
mm_48030.1	chr5	136246456	136246656	-	1	NA	NA	NA	-1616	NM_018825	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.005000	0.477612	
mm_25462.1	chr3	108554532	108554732	+	1	NA	NA	NA	-230	NR_028538	100217438		NR_028538		Scarna2	MBII-382	small Cajal body-specific RNA 2	ncRNA	0.065000	0.611940	
mm_89710.1	chr10	97714643	97714843	+	1	NA	NA	NA	-29	NR_130993	78127	Mm.376175	NR_130992		4930525C09Rik	-	RIKEN cDNA 4930525C09 gene	ncRNA	0.015000	0.527363	
mm_19690.1	chr2	103470300	103470500	-	1	NA	NA	NA	14753	NM_009804	12359	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0.020000	0.437811	
mm_109772.1	chr12	118847458	118847658	+	1	NA	NA	NA	1229	NM_177082	320145	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.050000	0.537313	
mm_25519.1	chr3	114030511	114030711	+	1	NA	NA	NA	71	NM_007729	12814	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding	0.050000	0.641791	
mm_165932.1	chr4	65614997	65615197	+	1	NA	NA	NA	10111	NM_001161782	69807	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0.030000	0.522388	71(CCCCTTAAAAGA,-,0.00),72(CCCTTAAAAGAT,+,0.00)
mm_95336.1	chr11	46815597	46815797	+	1	NA	NA	NA	4898	NM_178759	276891	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.015000	0.487562	
mm_148907.1	chr19	6942531	6942731	+	1	NA	NA	NA	69	NM_001285453	12015	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.060000	0.616915	
mm_101831.1	chr11	47379285	47379485	-	1	NA	NA	NA	-83	NM_011891	24052	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.040000	0.626866	
mm_52683.1	chr6	118011254	118011454	+	1	NA	NA	NA	-183	NM_001316749	70727	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	0.125000	0.751244	
mm_13004.1	chr2	90904667	90904867	+	1	NA	NA	NA	-19	NM_025991	67136	Mm.330394	NM_025991	ENSMUSG00000005505	Kbtbd4	2510026C23Rik	kelch repeat and BTB (POZ) domain containing 4	protein-coding	0.080000	0.611940	
mm_137465.1	chr17	26624099	26624299	+	1	NA	NA	NA	-52197	NM_025272	11974	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.020000	0.532338	-50(GACTTTATAAGG,-,0.00),-48(CTTTATAAGGAG,+,0.00),79(GGGTTTATAGAG,-,0.00)
mm_41274.1	chr5	89237163	89237363	+	1	NA	NA	NA	220635	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.015000	0.338308	
mm_39605.1	chr5	24100524	24100724	+	1	NA	NA	NA	34	NM_001161800	52323	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	0.110000	0.686567	
mm_21266.1	chr2	156839649	156839849	-	1	NA	NA	NA	-258	NM_001291124	228839	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0.035000	0.626866	
mm_147861.1	chr18	64277076	64277276	-	1	NA	NA	NA	4	NR_045366	73588	Mm.65475	NR_045366	ENSMUSG00000086128	St8sia3os	1700091E21Rik	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3, opposite strand	ncRNA	0.025000	0.467662	
mm_94621.1	chr11	16777917	16778117	+	1	NA	NA	NA	25814	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.005000	0.412935	23(CCTTTTAAATTC,+,0.00)
mm_11701.1	chr2	36049289	36049489	+	1	NA	NA	NA	-84	NM_029309	75495	Mm.276332	NM_029309	ENSMUSG00000026894	Morn5	1700010A17Rik	MORN repeat containing 5	protein-coding	0.080000	0.631841	
mm_37271.1	chr4	118544823	118545023	-	1	NA	NA	NA	-1197	NM_172383	230678	Mm.23639	NM_172383	ENSMUSG00000050854	Tmem125	6330530A05Rik|AV223516	transmembrane protein 125	protein-coding	0.025000	0.472637	
mm_140080.1	chr17	75178745	75178945	+	1	NA	NA	NA	64	NM_001331235	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.015000	0.452736	
mm_119785.1	chr14	54185749	54185949	+	1	NA	NA	NA	68080	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.457711	-1(GTGTTTAAGAGC,-,0.00),71(CCCCATAAAGAC,-,0.00)
mm_58834.1	chr7	16816180	16816380	+	1	NA	NA	NA	391	NM_001039878	97387	Mm.21612	NM_133789	ENSMUSG00000030374	Strn4	C80611|ZIN|zinedin	striatin, calmodulin binding protein 4	protein-coding	0.180000	0.796020	
mm_149672.1	chr19	20373333	20373533	+	1	NA	NA	NA	17238	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.000000	0.303483	
mm_34088.1	chr4	138832831	138833031	+	1	NA	NA	NA	1055	NM_001082531	18780	Mm.4675	NM_011108	ENSMUSG00000058908	Pla2g2a	EF|Mom1|Pla2|sPLA2|sPla2-IIA	phospholipase A2, group IIA (platelets, synovial fluid)	protein-coding	0.005000	0.517413	
mm_126690.1	chr15	85007967	85008167	+	1	NA	NA	NA	-9074	NM_023478	22270	Mm.46214	NM_023478	ENSMUSG00000022435	Upk3a	1110017C07Rik|UP3a|UPIII|Upk3	uroplakin 3A	protein-coding	0.020000	0.427861	
mm_2462.1	chr1	105356678	105356878	+	1	NA	NA	NA	-68	NM_001160368	320311	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	0.090000	0.716418	
mm_45499.1	chr5	72261973	72262173	-	1	NA	NA	NA	58730	NM_153389	231287	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.010000	0.507463	
mm_126928.1	chr15	91673187	91673387	+	1	NA	NA	NA	63	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.060000	0.651741	
mm_20792.1	chr2	144011119	144011319	-	1	NA	NA	NA	44	NM_133626	81910	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.125000	0.711443	
mm_142946.1	chr17	56108568	56108768	-	1	NA	NA	NA	1134	NM_020568	57435	Mm.12966	NM_020568	ENSMUSG00000002831	Plin4	S3-12|mKIAA1881	perilipin 4	protein-coding	0.000000	0.557214	
mm_10875.1	chr2	25241488	25241688	+	1	NA	NA	NA	-1341	NM_176834	68846	Mm.24777	NM_176834	ENSMUSG00000044628	Rnf208	1110061N23Rik	ring finger protein 208	protein-coding	0.020000	0.552239	
mm_143144.1	chr17	57221276	57221476	-	1	NA	NA	NA	-4148	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.020000	0.542289	
mm_142979.1	chr17	56218745	56218945	-	1	NA	NA	NA	44	NM_172624	224897	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	0.115000	0.711443	
mm_144316.1	chr18	12651750	12651950	+	1	NA	NA	NA	8317	NM_028341	72747	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.015000	0.373134	
mm_5423.1	chr1	34433174	34433374	-	1	NA	NA	NA	-75	NR_039562	100628580		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0.045000	0.537313	
mm_49953.1	chr6	40628475	40628675	+	1	NA	NA	NA	-256	NM_001171003	232714	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding	0.015000	0.427861	
mm_86068.1	chr9	114775332	114775532	-	1	NA	NA	NA	6561	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.010000	0.636816	
mm_43428.1	chr5	136059945	136060145	+	1	NA	NA	NA	2778	NM_027158	69665	Mm.75713	NM_027158	ENSMUSG00000006143	Upk3bl	2310043J07Rik	uroplakin 3B-like	protein-coding	0.050000	0.582090	
mm_21310.1	chr2	157098366	157098566	-	1	NA	NA	NA	11411	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.020000	0.552239	
mm_8892.1	chr1	162898259	162898459	-	1	NA	NA	NA	353	NM_018881	55990	Mm.10929	NM_018881	ENSMUSG00000040170	Fmo2	2310008D08Rik|2310042I22Rik|AW107733	flavin containing monooxygenase 2	protein-coding	0.005000	0.447761	
mm_50284.1	chr6	47453750	47453950	+	1	NA	NA	NA	-474	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.075000	0.681592	
mm_57294.1	chr6	124436285	124436485	-	1	NA	NA	NA	-21318	NM_001277805	19305	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1R|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0.015000	0.472637	
mm_94717.1	chr11	20543157	20543357	+	1	NA	NA	NA	4	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.085000	0.656716	-38(GACTCTTTAAAG,-,0.00),-36(CTCTTTAAAGTC,+,0.00)
mm_78540.1	chr9	35279426	35279626	+	1	NA	NA	NA	-1579	NR_040715	71133	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.015000	0.422886	
mm_60714.1	chr7	45277432	45277632	+	1	NA	NA	NA	-5341	NM_001033176	76713	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0.130000	0.696517	
mm_138868.1	chr17	43037590	43037790	+	1	NA	NA	NA	21135	NM_178589	94185	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0.045000	0.577114	
mm_1393.1	chr1	67128938	67129138	+	1	NA	NA	NA	6011	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.000000	0.333333	
mm_169416.1	chr14	53007484	53007684	+	1	NA	NA	NA	-511889	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.015000	0.422886	
mm_88914.1	chr10	81179903	81180103	+	1	NA	NA	NA	1042	NR_028549	100217454		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.020000	0.537313	
mm_45723.1	chr5	86065415	86065615	-	1	NA	NA	NA	68	NM_001345902	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0.080000	0.512438	-68(GTCTTTAAAAAA,-,0.00)
mm_116741.1	chr13	51763318	51763518	-	1	NA	NA	NA	30329	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.015000	0.527363	
mm_86319.1	chr9	122950838	122951038	-	1	NA	NA	NA	62	NM_025419	66202	Mm.268307	NM_025419	ENSMUSG00000032551	1110059G10Rik	-	RIKEN cDNA 1110059G10 gene	protein-coding	0.075000	0.577114	
mm_159021.1	chr1	172027973	172028173	-	1	NA	NA	NA	-778	NM_033509	93840	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	vang-like 2 (van gogh, Drosophila)	protein-coding	0.025000	0.527363	
mm_149354.1	chr19	10937066	10937266	+	1	NA	NA	NA	6	NM_009962	14764	Mm.470721	NM_009962	ENSMUSG00000034117	Ptgdr2	Crth2|Gpr44|Grp45	prostaglandin D2 receptor 2	protein-coding	0.020000	0.572139	
mm_125746.1	chr15	73724690	73724890	+	1	NA	NA	NA	-140	NM_001166388	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.210000	0.825871	
mm_55878.1	chr6	83523108	83523308	-	1	NA	NA	NA	13043	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.005000	0.512438	
mm_11716.1	chr2	36239490	36239690	+	1	NA	NA	NA	9164	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.005000	0.422886	
mm_165926.1	chr4	63344346	63344546	+	1	NA	NA	NA	-110	NM_008768	18405	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding	0.015000	0.532338	
mm_154730.1	chrX	9480468	9480668	+	1	NA	NA	NA	-11244	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.402985	
mm_131838.1	chr16	22960848	22961048	+	1	NA	NA	NA	9876	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.010000	0.502488	
mm_9584.1	chr1	174028383	174028583	-	1	NA	NA	NA	3272	NM_172648	226695	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	0.005000	0.308458	
mm_153352.1	chr19	40073651	40073851	-	1	NA	NA	NA	62	NM_206537	404195	Mm.379575	NM_206537	ENSMUSG00000067225	Cyp2c54	EG404195	cytochrome P450, family 2, subfamily c, polypeptide 54	protein-coding	0.000000	0.492537	
mm_63483.1	chr7	127746622	127746822	+	1	NA	NA	NA	-53	NM_172748	233902	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.050000	0.696517	
mm_29819.1	chr3	129217144	129217344	-	1	NA	NA	NA	3312	NM_001287048	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.040000	0.532338	
mm_116385.1	chr13	41182990	41183190	-	1	NA	NA	NA	37072	NM_001311121	54326	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0.010000	0.457711	
mm_8284.1	chr1	140183166	140183366	-	1	NA	NA	NA	145	NM_009888	12628	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0.000000	0.422886	
mm_44283.1	chr5	8078395	8078595	-	1	NA	NA	NA	21953	NM_001080974	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.005000	0.348259	
mm_109367.1	chr12	109645828	109646028	+	1	NA	NA	NA	3090	NR_046303	449561		NR_046303		AF357426	MBII-49	snoRNA AF357426	snoRNA	0.005000	0.417910	
mm_89857.1	chr10	108131000	108131200	+	1	NA	NA	NA	-31300	NM_027892	17931	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.045000	0.492537	
mm_36845.1	chr4	106678795	106678995	-	1	NA	NA	NA	49	NM_028209	72354	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	0.090000	0.641791	
mm_154605.1	chrX	7644046	7644246	+	1	NA	NA	NA	5566	NM_009305	20977	Mm.223674	NM_009305	ENSMUSG00000031144	Syp	A230093K24Rik|AI848995|Syn|p38	synaptophysin	protein-coding	0.020000	0.557214	
mm_100483.1	chr11	120233852	120234052	+	1	NA	NA	NA	1005	NM_198423	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.090000	0.716418	
mm_103574.1	chr11	77953597	77953797	-	1	NA	NA	NA	22858	NM_021286	20370	Mm.229330	NM_021286	ENSMUSG00000000632	Sez6	BSRP-C|D11Bhm177e|sez-6	seizure related gene 6	protein-coding	0.040000	0.616915	
mm_82009.1	chr9	121710352	121710552	+	1	NA	NA	NA	63	NM_026794	26901	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	0.080000	0.621891	
mm_172076.1	chr6	141601147	141601347	-	1	NA	NA	NA	-28271	NM_020495	28253	Mm.272223	NM_020495	ENSMUSG00000030236	Slco1b2	7330442B20Rik|OATP-C|OATP2|Oatp1b2|Oatp4|Slc21a10|Slc21a6|lst-1|mlst-1	solute carrier organic anion transporter family, member 1b2	protein-coding	0.015000	0.492537	47(TTCTTTATAAAG,-,0.00),49(CTTTATAAAGCG,+,0.00)
mm_165934.1	chr4	69157128	69157328	-	1	NA	NA	NA	-202831	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.010000	0.467662	
mm_167947.1	chrX	137599436	137599636	+	1	NA	NA	NA	28782	NM_030688	60367	Mm.328321	NM_030688	ENSMUSG00000059203	Il1rapl2	-	interleukin 1 receptor accessory protein-like 2	protein-coding	0.005000	0.318408	
mm_32088.1	chr4	98436868	98437068	+	1	NA	NA	NA	41142	NM_172696	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.010000	0.492537	
mm_156240.1	chrX	136223944	136224144	+	1	NA	NA	NA	3	NM_001127169	100040972	Mm.18125	NM_001127169	ENSMUSG00000079428	Tceal7	1110018P05Rik	transcription elongation factor A (SII)-like 7	protein-coding	0.020000	0.452736	
mm_165860.1	chr4	25307679	25307879	+	1	NA	NA	NA	-25958	NM_026194	67490	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	0.030000	0.487562	-20(TCCTTTAAAAAG,-,0.00),-19(CCTTTAAAAAGA,+,0.00)
mm_134712.1	chr16	22894746	22894946	-	1	NA	NA	NA	-460	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.020000	0.467662	
mm_37437.1	chr4	122961083	122961283	-	1	NA	NA	NA	5	NM_029662	76574	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.100000	0.656716	-36(ACCTTTAAGAGG,-,0.00),-35(CCTTTAAGAGGC,+,0.00)
mm_79923.1	chr9	65630476	65630676	+	1	NA	NA	NA	-6	NM_028030	71973	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	0.145000	0.805970	1(GCCCTGAAAAGC,-,0.00)
mm_104761.1	chr11	98477148	98477348	-	1	NA	NA	NA	30414	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.020000	0.527363	
mm_156664.1	chrX	158149727	158149927	+	1	NA	NA	NA	-106630	NM_177751	245684	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding	0.030000	0.557214	
mm_29641.1	chr3	121815361	121815561	-	1	NA	NA	NA	-246	NM_008991	19299	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.105000	0.696517	
mm_132251.1	chr16	32751378	32751578	+	1	NA	NA	NA	15592	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.015000	0.452736	
mm_127306.1	chr15	100227802	100228002	+	1	NA	NA	NA	43	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.150000	0.791045	
mm_69171.1	chr7	127215239	127215439	-	1	NA	NA	NA	3106	NM_017461	54204	Mm.18	NM_017461	ENSMUSG00000000486	Sept1	Diff6|Pnutl3	septin 1	protein-coding	0.065000	0.616915	
mm_28976.1	chr3	101106254	101106454	-	1	NA	NA	NA	3812	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding	0.005000	0.398010	
mm_140584.1	chr17	10213067	10213267	-	1	NA	NA	NA	106194	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.000000	0.303483	
mm_51693.1	chr6	86539610	86539810	+	1	NA	NA	NA	12309	NR_037961	72012	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.010000	0.383085	
mm_122901.1	chr14	54952959	54953159	-	1	NA	NA	NA	-3917	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.010000	0.472637	
mm_105900.1	chr11	114982813	114983013	-	1	NA	NA	NA	6973	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.000000	0.477612	
mm_59013.1	chr7	19228866	19229066	+	1	NA	NA	NA	577	NM_207525	403187	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.040000	0.517413	
mm_25984.1	chr3	133338858	133339058	+	1	NA	NA	NA	28848	NM_146141	74776	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0.005000	0.497512	
mm_85080.1	chr9	91364896	91365096	-	1	NA	NA	NA	803	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.095000	0.706468	
mm_78115.1	chr9	20642853	20643053	+	1	NA	NA	NA	-147	NM_013911	30843	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding	0.065000	0.641791	
mm_27652.1	chr3	63964488	63964688	-	1	NA	NA	NA	145	NM_001331067	11416	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	0.080000	0.616915	
mm_76669.1	chr8	93427275	93427475	-	1	NA	NA	NA	-90166	NM_021456	12623	Mm.22720	NM_021456	ENSMUSG00000057074	Ces1g	Ces-1|Ces1|Ses-1	carboxylesterase 1G	protein-coding	0.040000	0.621891	
mm_102411.1	chr11	59191717	59191917	-	1	NA	NA	NA	135	NM_008193	14923	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	0.135000	0.736318	
mm_131048.1	chr16	4003835	4004035	+	1	NA	NA	NA	-2257	NM_177472	52864	Mm.29935	NM_177472	ENSMUSG00000039738	Slx4	AI256635|AI426760|Btbd12|D16Bwg1016e	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)	protein-coding	0.080000	0.577114	
mm_167341.1	chr8	73888279	73888479	+	1	NA	NA	NA	-534839	NM_010687	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.010000	0.348259	
mm_156799.1	chrX	163908888	163909088	+	1	NA	NA	NA	-29	NM_001290378	108012	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	0.120000	0.701493	
mm_143835.1	chr17	84106315	84106515	-	1	NA	NA	NA	27755	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.005000	0.502488	
mm_142582.1	chr17	46704908	46705108	-	1	NA	NA	NA	-6	NM_009358	21770	Mm.295009	NM_009358	ENSMUSG00000059409	Ppp2r5d	B'delta|TEG-271|Tex271	protein phosphatase 2, regulatory subunit B', delta	protein-coding	0.090000	0.621891	
mm_48706.1	chr5	147076483	147076683	-	1	NA	NA	NA	-11	NM_080795	140887	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	0.095000	0.641791	
mm_130165.1	chr15	92705862	92706062	-	1	NA	NA	NA	108853	NM_001164594	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding	0.015000	0.462687	-76(GTCCTTATGAGG,-,0.00)
mm_119642.1	chr14	51918356	51918556	+	1	NA	NA	NA	-305	NM_001128634	219038	Mm.296425	NM_001128634	ENSMUSG00000008813	Tppp2	Gm1790|Gm77	tubulin polymerization-promoting protein family member 2	protein-coding	0.010000	0.472637	49(GGCCAGAAAGGG,-,0.00)
mm_54108.1	chr6	16898366	16898566	-	1	NA	NA	NA	-25	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.010000	0.388060	
mm_65267.1	chr7	19940271	19940471	-	1	NA	NA	NA	10372	NM_027308	70080	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	0.015000	0.512438	
mm_71080.1	chr8	34622929	34623129	+	1	NA	NA	NA	17287	NR_040706	330734	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	0.010000	0.363184	-29(CTATTTATACCC,+,0.00)
mm_154143.1	chr19	58370300	58370500	-	1	NA	NA	NA	74196	NR_040449	791347	Mm.452208	NR_040449		Gm10007	ENSMUSG00000056739	predicted gene 10007	ncRNA	0.010000	0.353234	
mm_122766.1	chr14	54253814	54254014	-	1	NA	NA	NA	15	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.110000	0.626866	
mm_100893.1	chr11	6065674	6065874	-	1	NA	NA	NA	-26	NM_007595	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	0.180000	0.781095	
mm_123965.1	chr14	74947750	74947950	-	1	NA	NA	NA	27	NM_001252132	380916	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.125000	0.746269	
mm_139013.1	chr17	45686269	45686469	+	1	NA	NA	NA	-3	NM_026732	68463	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	0.125000	0.741294	
mm_25318.1	chr3	106485933	106486133	+	1	NA	NA	NA	-7	NM_028110	72121	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.010000	0.532338	
mm_119043.1	chr14	30595894	30596094	+	1	NA	NA	NA	14316	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.005000	0.492537	
mm_167347.1	chr8	82682262	82682462	+	1	NA	NA	NA	91764	NM_145600	30932	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	0.000000	0.363184	
mm_91308.1	chr10	24920667	24920867	-	1	NA	NA	NA	6703	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.030000	0.507463	-43(CTTTTAATGGCA,+,0.00)
mm_54411.1	chr6	32587253	32587453	-	1	NA	NA	NA	839	NM_175750	243743	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0.095000	0.691542	
mm_54144.1	chr6	22306947	22307147	-	1	NA	NA	NA	18820	NM_053116	93735	Mm.137403	NM_053116	ENSMUSG00000029671	Wnt16	E130309I19Rik	wingless-type MMTV integration site family, member 16	protein-coding	0.000000	0.283582	
mm_35990.1	chr4	55532029	55532229	-	1	NA	NA	NA	346	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.065000	0.527363	85(TTTTTTAAAGAC,+,0.00)
mm_119581.1	chr14	50924857	50925057	+	1	NA	NA	NA	8	NM_009687	11792	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	0.080000	0.592040	
mm_79264.1	chr9	50753088	50753288	+	1	NA	NA	NA	217	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.025000	0.527363	13(GCATATATAAGG,-,0.00)
mm_51968.1	chr6	91758348	91758548	+	1	NA	NA	NA	48945	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.005000	0.492537	
mm_58664.1	chr7	6813674	6813874	+	1	NA	NA	NA	10187	NR_037213	100499513		NR_037213	ENSMUSG00000092815	Mir3099	mir-3099|mmu-mir-3099	microRNA 3099	ncRNA	0.020000	0.517413	
mm_124726.1	chr15	6580187	6580387	+	1	NA	NA	NA	440	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.010000	0.462687	-97(GTTTTTAAAACC,+,0.00)
mm_30925.1	chr4	32754336	32754536	+	1	NA	NA	NA	-45823	NM_175364	108755	Mm.1182	NM_175364	ENSMUSG00000045854	Lyrm2	2610208E05Rik	LYR motif containing 2	protein-coding	0.025000	0.482587	
mm_150727.1	chr19	43689553	43689753	+	1	NA	NA	NA	-36	NM_053103	93685	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	0.105000	0.706468	
mm_127617.1	chr15	102460384	102460584	+	1	NA	NA	NA	1314	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.015000	0.611940	
mm_57166.1	chr6	122801602	122801802	-	1	NA	NA	NA	-18482	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.170000	0.746269	
mm_123909.1	chr14	73325646	73325846	-	1	NA	NA	NA	45	NM_009029	19645	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb	retinoblastoma 1	protein-coding	0.195000	0.756219	
mm_26991.1	chr3	25743150	25743350	-	1	NA	NA	NA	410057	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.298507	
mm_40559.1	chr5	61787932	61788132	+	1	NA	NA	NA	-20811	NM_019468	14380	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	0.000000	0.323383	
mm_22670.1	chr3	14872230	14872430	+	1	NA	NA	NA	8792	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.000000	0.293532	15(GCCTATTAAAAA,-,0.00)
mm_12455.1	chr2	71214385	71214585	+	1	NA	NA	NA	2539	NM_010064	13427	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0.015000	0.348259	-57(TGCTTTTTAAGG,-,0.00),-55(CTTTTTAAGGTC,+,0.00),-23(TGATTTAAAAGC,-,0.00)
mm_24665.1	chr3	94487598	94487798	+	1	NA	NA	NA	4976	NR_110353	78784	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.015000	0.582090	
mm_127808.1	chr15	5010002	5010202	-	1	NA	NA	NA	53671	NM_001243837	109828	Mm.208034	NM_001243837	ENSMUSG00000079105	C7	A530026G17|Gm1238	complement component 7	protein-coding	0.000000	0.308458	47(GAGTTTAAAAGA,-,0.00)
mm_49210.1	chr6	15721050	15721250	+	1	NA	NA	NA	489	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.050000	0.621891	-11(TGCTCTAAAAAC,-,0.00)
mm_6658.1	chr1	80177663	80177863	-	1	NA	NA	NA	36181	NM_173425	241128	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding	0.005000	0.417910	
mm_131242.1	chr16	10489717	10489917	+	1	NA	NA	NA	36	NM_001243761	12265	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.045000	0.601990	
mm_21794.1	chr2	164857577	164857777	-	1	NA	NA	NA	31	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.085000	0.696517	2(ACTTATAAAGGC,+,0.00)
mm_144098.1	chr18	3383166	3383366	+	1	NA	NA	NA	41	NM_029402	71745	Mm.291707	NM_029402	ENSMUSG00000024231	Cul2	1300003D18Rik|4932411N15Rik|AI327301|mKIAA4106	cullin 2	protein-coding	0.125000	0.771144	
mm_145288.1	chr18	53245526	53245726	+	1	NA	NA	NA	-36	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.180000	0.830846	
mm_168819.1	chr12	22156548	22156748	-	1	NA	NA	NA	-2	NR_136920	100043416		NM_001004167	ENSMUSG00000093846	Gm4425	EG432637|Gm5433	KRAB-domain protein pseudogene	pseudo	0.130000	0.731343	
mm_138940.1	chr17	43984927	43985127	+	1	NA	NA	NA	31836	NM_030598	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.010000	0.417910	
mm_22454.1	chr3	3187932	3188132	+	1	NA	NA	NA	-319998	NM_013920	30942	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.000000	0.417910	
mm_56397.1	chr6	96116888	96117088	-	1	NA	NA	NA	3834	NM_182808	320265	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.025000	0.636816	
mm_22602.1	chr3	14505998	14506198	+	1	NA	NA	NA	25399	NM_080852	140918	Mm.215250	NM_080852	ENSMUSG00000039710	Slc7a12	Asc-2|XAT1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 12	protein-coding	0.000000	0.402985	
mm_139073.1	chr17	46650521	46650721	+	1	NA	NA	NA	283	NM_025611	66515	Mm.329078	NM_025611	ENSMUSG00000038545	Cul7	2510004L20Rik|AA409809|C230011P08Rik|p185|p193	cullin 7	protein-coding	0.090000	0.716418	
mm_158583.1	chrX	150812804	150813004	-	1	NA	NA	NA	799	NM_001199246	80884	Mm.22575	NM_030700	ENSMUSG00000025268	Maged2	4833439A22Rik|Mage-d2|ORF1	melanoma antigen, family D, 2	protein-coding	0.035000	0.631841	
mm_50909.1	chr6	57582560	57582760	+	1	NA	NA	NA	1668	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.015000	0.393035	3(GTCCATAAAAAC,-,0.00)
mm_16851.1	chr2	11620410	11620610	-	1	NA	NA	NA	-17311	NM_152824	76938	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0.000000	0.487562	-39(TCTTTTATAGCA,+,0.00)
mm_107195.1	chr12	25303656	25303856	+	1	NA	NA	NA	174582	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.015000	0.492537	
mm_122586.1	chr14	50870425	50870625	-	1	NA	NA	NA	29	NM_009351	21745	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	0.060000	0.651741	
mm_99934.1	chr11	111026678	111026878	+	1	NA	NA	NA	2918	NM_001252208	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.005000	0.358209	
mm_35393.1	chr4	34049964	34050164	-	1	NA	NA	NA	1	NM_001290443	67652	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.095000	0.676617	
mm_142604.1	chr17	46801783	46801983	-	1	NA	NA	NA	-19227	NM_025433	66229	Mm.218533	NM_025433	ENSMUSG00000063888	Rpl7l1	1500016H10Rik	ribosomal protein L7-like 1	protein-coding	0.025000	0.537313	
mm_4410.1	chr1	172482122	172482322	+	1	NA	NA	NA	9	NM_001145800	93842	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	0.070000	0.686567	
mm_67071.1	chr7	67952854	67953054	-	1	NA	NA	NA	697	NM_010513	16001	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.095000	0.651741	
mm_32105.1	chr4	98728266	98728466	+	1	NA	NA	NA	1612	NM_001081202	381591	Mm.34340	NM_001081202	ENSMUSG00000087166	L1td1	AA546746|AB211064|D76865|ECAT11	LINE-1 type transposase domain containing 1	protein-coding	0.025000	0.437811	
mm_93115.1	chr10	91123900	91124100	-	1	NA	NA	NA	-37	NM_133668	18674	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.130000	0.661692	
mm_100680.1	chr11	3452845	3453045	-	1	NA	NA	NA	11	NM_001290472	193670	Mm.136973	NM_145355	ENSMUSG00000020448	Rnf185	-	ring finger protein 185	protein-coding	0.040000	0.562189	17(TACTATAAAAGG,-,0.00)
mm_70160.1	chr7	143548990	143549190	-	1	NA	NA	NA	30	NM_001285489	17955	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	0.120000	0.691542	
mm_19976.1	chr2	118307580	118307780	-	1	NA	NA	NA	2766	NR_045919	73358	Mm.437192	NR_045919	ENSMUSG00000085889	1700054M17Rik	-	RIKEN cDNA 1700054M17 gene	ncRNA	0.020000	0.537313	
mm_64490.1	chr7	143107169	143107369	+	1	NA	NA	NA	15	NM_008434	16535	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0.085000	0.761194	
mm_163420.1	chr12	80273315	80273515	+	1	NA	NA	NA	-13034	NM_001346669	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.025000	0.527363	
mm_127830.1	chr15	6565221	6565421	-	1	NA	NA	NA	-14526	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.020000	0.542289	
mm_97264.1	chr11	75764740	75764940	+	1	NA	NA	NA	-30969	NR_136933	102641247	Mm.411386	NR_136932		Gm12339	OTTMUSG00000006218	predicted gene 12339	ncRNA	0.000000	0.363184	
mm_122397.1	chr14	40994229	40994429	-	1	NA	NA	NA	12591	NM_001316739	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.005000	0.388060	
mm_51692.1	chr6	86527218	86527418	+	1	NA	NA	NA	-12	NR_037960	72012	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.065000	0.562189	
mm_31413.1	chr4	48048945	48049145	+	1	NA	NA	NA	-2201	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.070000	0.676617	
mm_4577.1	chr1	177983345	177983545	+	1	NA	NA	NA	-7990	NM_001034899	545391	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	0.095000	0.746269	
mm_137252.1	chr17	24548581	24548781	+	1	NA	NA	NA	-1269	NM_013630	18763	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystic kidney disease 1 homolog	protein-coding	0.020000	0.383085	
mm_39131.1	chr4	155086225	155086425	-	1	NA	NA	NA	-28	NM_026395	67830	Mm.241604	NM_026395	ENSMUSG00000029048	Rer1	1110060F11Rik|5830454N22Rik|AU043380	retention in endoplasmic reticulum sorting receptor 1	protein-coding	0.125000	0.726368	
mm_45436.1	chr5	67231585	67231785	-	1	NA	NA	NA	-28880	NM_001285452	67878	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	0.055000	0.432836	
mm_21433.1	chr2	158361430	158361630	-	1	NA	NA	NA	-8	NR_027887	68108	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	0.070000	0.597015	
mm_88300.1	chr10	75316876	75317076	+	1	NA	NA	NA	99	NM_009630	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.095000	0.696517	
mm_116415.1	chr13	41487259	41487459	-	1	NA	NA	NA	1	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.030000	0.552239	
mm_169978.1	chr17	14978958	14979158	+	1	NA	NA	NA	194	NM_001123370	100041574	Mm.393767	NM_001123370	ENSMUSG00000036552	9030025P20Rik	D17Zt9e	RIKEN cDNA 9030025P20 gene	protein-coding	0.045000	0.532338	
mm_107224.1	chr12	26472527	26472727	+	1	NA	NA	NA	3412	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.005000	0.492537	
mm_63988.1	chr7	140094934	140095134	+	1	NA	NA	NA	1638	NM_009475	22264	Mm.439707	NM_009475	ENSMUSG00000025467	Prap1	Upa	proline-rich acidic protein 1	protein-coding	0.010000	0.601990	
mm_108395.1	chr12	80948732	80948932	+	1	NA	NA	NA	3333	NM_001347415	20384	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0.005000	0.253731	-66(GTCTTTAAAGGA,-,0.00),67(TTGCTTAAAAGC,-,0.00)
mm_10659.1	chr2	20724455	20724655	+	1	NA	NA	NA	205042	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.000000	0.542289	
mm_93606.1	chr10	117234125	117234325	-	1	NA	NA	NA	4456	NM_029906	77397	Mm.118350	NM_029906	ENSMUSG00000020177	9530003J23Rik	Lyzf1	RIKEN cDNA 9530003J23 gene	protein-coding	0.005000	0.472637	-3(TGCTCTTAAAGG,-,0.00),-2(GCTCTTAAAGGT,+,0.00)
mm_33835.1	chr4	135686118	135686318	+	1	NA	NA	NA	-239	NM_174851	242700	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	0.060000	0.562189	
mm_82489.1	chr9	18469608	18469808	-	1	NA	NA	NA	3851	NM_028935	72230	Mm.289689	NM_028935	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	0.010000	0.432836	
mm_42820.1	chr5	122093082	122093282	+	1	NA	NA	NA	-7798	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.025000	0.592040	
mm_14080.1	chr2	124610503	124610703	+	1	NA	NA	NA	307	NM_172537	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.090000	0.716418	
mm_156771.1	chrX	160768081	160768281	+	1	NA	NA	NA	168	NM_011302	20147	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	0.005000	0.363184	
mm_41179.1	chr5	88196890	88197090	+	1	NA	NA	NA	-71929	NM_001110779	665615	Mm.366701	NM_001110779	ENSMUSG00000090302	Gm7714	EG665615	predicted gene 7714	protein-coding	0.010000	0.388060	-35(AACTATATAAGA,-,0.00)
mm_36189.1	chr4	62285602	62285802	-	1	NA	NA	NA	-727	NM_025286	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.005000	0.248756	
mm_78373.1	chr9	27396707	27396907	+	1	NA	NA	NA	0	NM_029299	75469	Mm.45824	NM_029299	ENSMUSG00000031991	Spata19	1700001L23Rik|AV047838|spergen-1	spermatogenesis associated 19	protein-coding	0.005000	0.472637	
mm_166178.1	chr5	30945380	30945580	-	1	NA	NA	NA	0	NM_026770	68567	Mm.45127	NM_026770	ENSMUSG00000029161	Cgref1	1110004G24Rik|AW045201|Cgr11	cell growth regulator with EF hand domain 1	protein-coding	0.115000	0.761194	
mm_172901.1	chr9	57480950	57481150	-	1	NA	NA	NA	-12990	NM_001301635	56807	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	0.030000	0.497512	-37(TTCTATAAAAAC,-,0.00)
mm_139305.1	chr17	48348390	48348590	+	1	NA	NA	NA	2089	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.030000	0.621891	
mm_37966.1	chr4	133432828	133433028	-	1	NA	NA	NA	-47205	NM_175307	100342	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	0.010000	0.542289	
mm_93706.1	chr10	118633345	118633545	-	1	NA	NA	NA	-76920	NR_104123	103214	Mm.30529	NR_104123		Tmevpg1	AI447422	Theiler's murine encephalomyelitis virus persistence candidate gene 1	ncRNA	0.015000	0.402985	
mm_58266.1	chr6	145340580	145340780	-	1	NA	NA	NA	-46945	NR_003625	381827	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	0.060000	0.601990	
mm_168445.1	chr1	140648959	140649159	-	1	NA	NA	NA	7343	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0.035000	0.452736	-17(TGCTTTAAAAGA,-,0.00),-16(GCTTTAAAAGAA,+,0.00)
mm_55885.1	chr6	83527690	83527890	-	1	NA	NA	NA	8461	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.005000	0.462687	
mm_120131.1	chr14	60197203	60197403	+	1	NA	NA	NA	31612	NR_030458	751526		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA	0.020000	0.522388	
mm_72275.1	chr8	75100029	75100229	+	1	NA	NA	NA	6511	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.000000	0.542289	
mm_125078.1	chr15	25984386	25984586	+	1	NA	NA	NA	120	NM_144523	52521	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.070000	0.611940	
mm_158045.1	chrX	98890852	98891052	-	1	NA	NA	NA	73	NM_052976	94190	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	0.070000	0.592040	
mm_82903.1	chr9	32901349	32901549	-	1	NA	NA	NA	27517	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.015000	0.542289	
mm_104282.1	chr11	89818555	89818755	-	1	NA	NA	NA	-121719	NM_001327810	382543	Mm.60997	NM_172534	ENSMUSG00000047773	Ankfn1	4932411E22Rik|Gm1175|nmf9	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding	0.000000	0.502488	
mm_62708.1	chr7	110629429	110629629	+	1	NA	NA	NA	1860	NM_009627	11535	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.020000	0.318408	
mm_18539.1	chr2	64916786	64916986	-	1	NA	NA	NA	105880	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0.020000	0.502488	
mm_57197.1	chr6	122850251	122850451	-	1	NA	NA	NA	5806	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.035000	0.467662	-3(TCATTTATACCC,+,0.00)
mm_126958.1	chr15	92243553	92243753	+	1	NA	NA	NA	82296	NM_001159647	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.005000	0.378109	
mm_126536.1	chr15	82022649	82022849	+	1	NA	NA	NA	6380	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.015000	0.582090	
mm_70812.1	chr8	23085371	23085571	+	1	NA	NA	NA	27212	NR_102385	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.000000	0.452736	78(GTTTTTATGGCT,+,0.00)
mm_157258.1	chrX	19153906	19154106	-	1	NA	NA	NA	-7035	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.015000	0.472637	
mm_80348.1	chr9	75173988	75174188	+	1	NA	NA	NA	-57926	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.025000	0.407960	
mm_144005.1	chr17	88065946	88066146	-	1	NA	NA	NA	-761	NM_001081034	225055	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.115000	0.791045	
mm_141723.1	chr17	34115373	34115573	-	1	NA	NA	NA	4427	NR_037970	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.010000	0.542289	
mm_16106.1	chr2	169632998	169633198	+	1	NA	NA	NA	-548	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.030000	0.547264	
mm_131369.1	chr16	13828918	13829118	+	1	NA	NA	NA	9767	NM_001346111	18203	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0.000000	0.477612	
mm_54451.1	chr6	34746133	34746333	-	1	NA	NA	NA	-34199	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.030000	0.547264	
mm_121768.1	chr14	19873293	19873493	-	1	NA	NA	NA	34468	NR_105025	52512	Mm.483998	NR_105025		D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.005000	0.343284	
mm_1457.1	chr1	67230768	67230968	+	1	NA	NA	NA	107841	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.000000	0.328358	-38(ACTTATATAGTC,+,0.00)
mm_91717.1	chr10	44458575	44458775	-	1	NA	NA	NA	73	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.115000	0.676617	64(CCGTAGAAAAGG,-,0.00)
mm_42733.1	chr5	120629951	120630151	+	1	NA	NA	NA	4184	NM_001195094	546886	Mm.464847	NM_001195094	ENSMUSG00000094282	Cfap73	Ccdc42b|Gm5988	cilia and flagella associated protein 73	protein-coding	0.065000	0.626866	
mm_68745.1	chr7	121064371	121064571	-	1	NA	NA	NA	10059	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.005000	0.502488	
mm_135781.1	chr16	56885921	56886121	-	1	NA	NA	NA	142	NM_019631	56277	Mm.262328	NM_019631	ENSMUSG00000022754	Tmem45a	C630002M10Rik|M32486|p19.5	transmembrane protein 45a	protein-coding	0.025000	0.522388	
mm_74809.1	chr8	22633293	22633493	-	1	NA	NA	NA	3416	NR_027886	68074	Mm.463136	NR_027886		A930013F10Rik	-	RIKEN cDNA A930013F10 gene	ncRNA	0.020000	0.502488	
mm_165874.1	chr4	40759880	40760080	-	1	NA	NA	NA	-2095	NM_021535	74255	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.010000	0.452736	
mm_143820.1	chr17	83846690	83846890	-	1	NA	NA	NA	0	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.045000	0.577114	
mm_79239.1	chr9	50504226	50504426	+	1	NA	NA	NA	479	NR_040714	69631	Mm.414996	NR_040714	ENSMUSG00000101304	Plet1os	2310014F07Rik	placenta expressed transcript 1, opposite strand	ncRNA	0.010000	0.492537	
mm_63763.1	chr7	131123170	131123370	+	1	NA	NA	NA	23013	NM_173409	233918	Mm.78341	NM_173409	ENSMUSG00000013668	4933402N03Rik	4930412O05	RIKEN cDNA 4933402N03 gene	protein-coding	0.005000	0.492537	
mm_119816.1	chr14	54225356	54225556	+	1	NA	NA	NA	28473	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.462687	
mm_60763.1	chr7	45540772	45540972	+	1	NA	NA	NA	-14056	NM_025330	66065	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.015000	0.611940	
mm_8052.1	chr1	135373861	135374061	-	1	NA	NA	NA	1102	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.025000	0.427861	-100(CCCTCTATAGAG,-,0.00),-80(CCTTTTAAAATA,+,0.00)
mm_5899.1	chr1	54716765	54716965	-	1	NA	NA	NA	-159181	NM_001163314	241062	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.020000	0.378109	
mm_169443.1	chr14	56811595	56811795	-	1	NA	NA	NA	21	NM_001253752	219105	Mm.473172	NM_144842	ENSMUSG00000040123	Zmym5	9830124H08Rik	zinc finger, MYM-type 5	protein-coding	0.105000	0.726368	
mm_56788.1	chr6	116641368	116641568	-	1	NA	NA	NA	4579	NR_106010	102466793		NR_106010	ENSMUSG00000098334	Mir7043	Gm27776|mmu-mir-7043	microRNA 7043	ncRNA	0.010000	0.517413	
mm_131412.1	chr16	14474216	14474416	+	1	NA	NA	NA	-88001	NR_033556	545280	Mm.123679	NR_033556	ENSMUSG00000075395	A630010A05Rik	-	RIKEN cDNA A630010A05 gene	ncRNA	0.010000	0.497512	
mm_66399.1	chr7	44306900	44307100	-	1	NA	NA	NA	-41	NM_009131	20256	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	0.020000	0.577114	
mm_54990.1	chr6	48770653	48770853	-	1	NA	NA	NA	98	NM_031247	83408	Mm.333050	NM_031247	ENSMUSG00000039264	Gimap3	2010110D23Rik|Gimap5|Ian4	GTPase, IMAP family member 3	protein-coding	0.010000	0.497512	
mm_135296.1	chr16	38602577	38602777	-	1	NA	NA	NA	39863	NM_026407	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.015000	0.512438	-59(AGCCCTAAAAGC,-,0.00)
mm_151814.1	chr19	5488952	5489152	-	1	NA	NA	NA	-716	NM_027877	71711	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	0.050000	0.562189	-66(CTCCTTATAAGG,-,0.00),-64(CCTTATAAGGCT,+,0.00)
mm_5461.1	chr1	36369040	36369240	-	1	NA	NA	NA	41	NM_172652	226976	Mm.24734	NM_172652	ENSMUSG00000010453	Kansl3	4632411B12Rik|4932435K23|AI431067|AI647574|C85723|Kiaa1310|mKIAA1310	KAT8 regulatory NSL complex subunit 3	protein-coding	0.160000	0.741294	
mm_73791.1	chr8	117256720	117256920	+	1	NA	NA	NA	-199	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.190000	0.791045	
mm_110316.1	chr12	34528774	34528974	-	1	NA	NA	NA	15	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.010000	0.497512	
mm_151043.1	chr19	47023829	47024029	+	1	NA	NA	NA	-8740	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.010000	0.527363	
mm_90193.1	chr10	120208693	120208893	+	1	NA	NA	NA	-33	NM_026617	68212	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	0.100000	0.671642	
mm_28754.1	chr3	95819129	95819329	-	1	NA	NA	NA	-276	NM_001081293	75137	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	0.045000	0.402985	
mm_173276.1	chrX	99557242	99557442	+	1	NA	NA	NA	-86607	NM_008853	18744	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger 1, E3 ubiquitin protein ligase	protein-coding	0.025000	0.547264	9(CTGTTTTAAAGA,-,0.00)
mm_53908.1	chr6	3968273	3968473	-	1	NA	NA	NA	2	NM_009364	21789	Mm.25612	NM_009364	ENSMUSG00000029664	Tfpi2	AV000670|PP5/TFPI-2	tissue factor pathway inhibitor 2	protein-coding	0.045000	0.611940	
mm_56665.1	chr6	113600535	113600735	-	1	NA	NA	NA	80	NM_027633	70979	Mm.72959	NM_027633	ENSMUSG00000033963	Fancd2os	4931417G12Rik	Fancd2 opposite strand	protein-coding	0.075000	0.651741	
mm_26699.1	chr3	157566759	157566959	+	1	NA	NA	NA	-33	NM_011196	19218	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0.120000	0.756219	
mm_137343.1	chr17	25136613	25136813	+	1	NA	NA	NA	82	NM_001317404	26373	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.005000	0.512438	-35(GTCTTTAAATGC,-,0.00)
mm_101959.1	chr11	50299152	50299352	-	1	NA	NA	NA	-6916	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.010000	0.422886	-38(CCTTTTAAGATG,+,0.00)
mm_115848.1	chr13	21287361	21287561	-	1	NA	NA	NA	5225	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.020000	0.517413	
mm_73190.1	chr8	95369526	95369726	+	1	NA	NA	NA	17330	NM_008609	17388	Mm.217116	NM_008609	ENSMUSG00000031790	Mmp15	AI503551|MT-MMP 2|MT2-MMP	matrix metallopeptidase 15	protein-coding	0.045000	0.666667	
mm_108766.1	chr12	89591392	89591592	+	1	NA	NA	NA	-220991	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.005000	0.368159	
mm_83516.1	chr9	46112240	46112440	-	1	NA	NA	NA	99520	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.010000	0.437811	-50(GGATTTTAAAAG,-,0.00)
mm_134178.1	chr16	10960433	10960633	-	1	NA	NA	NA	32588	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.015000	0.417910	-22(CCTTAAAGACTG,+,0.00)
mm_164998.1	chr19	18887991	18888191	+	1	NA	NA	NA	113026	NM_146095	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.020000	0.442786	
mm_82499.1	chr9	20385018	20385218	-	1	NA	NA	NA	40	NM_001004190	434377	Mm.379669	NM_001004190	ENSMUSG00000045519	Zfp560	2310030G09Rik|Znf560	zinc finger protein 560	protein-coding	0.105000	0.646766	
mm_60047.1	chr7	31059764	31059964	+	1	NA	NA	NA	-71	NM_144556	243914	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	0.015000	0.492537	
mm_98305.1	chr11	90033000	90033200	+	1	NA	NA	NA	2752	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.020000	0.572139	
mm_28753.1	chr3	95818967	95819167	-	1	NA	NA	NA	-114	NM_001081293	75137	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	0.090000	0.601990	
mm_128304.1	chr15	37734317	37734517	-	1	NA	NA	NA	57583	NM_001170866	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.025000	0.447761	
mm_72393.1	chr8	81767657	81767857	+	1	NA	NA	NA	425195	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.005000	0.487562	
mm_25353.1	chr3	107001549	107001749	+	1	NA	NA	NA	-34513	NM_008418	16491	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	0.005000	0.402985	
mm_57434.1	chr6	124914857	124915057	-	1	NA	NA	NA	2989	NM_026988	69202	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	0.025000	0.547264	
mm_4046.1	chr1	165780639	165780839	+	1	NA	NA	NA	-7942	NM_031162	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.050000	0.582090	70(GTCCCTTTAAGG,-,0.00),72(CCCTTTAAGGAA,+,0.00)
mm_1727.1	chr1	75375234	75375434	+	1	NA	NA	NA	37	NM_007463	11790	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0.070000	0.671642	
mm_15002.1	chr2	152476919	152477119	+	1	NA	NA	NA	-44	NM_176950	319579	Mm.190454	NM_176950	ENSMUSG00000049560	Defb20	9230107O10Rik|BD-20|mBD-20	defensin beta 20	protein-coding	0.010000	0.497512	
mm_86500.1	chr10	6788948	6789148	+	1	NA	NA	NA	472	NM_001039652	18390	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0.040000	0.592040	
mm_72649.1	chr8	84722962	84723162	+	1	NA	NA	NA	21605	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.025000	0.616915	
mm_38493.1	chr4	140957752	140957952	-	1	NA	NA	NA	50	NR_045911	100126227	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	OTTMUSG00000010081	predicted gene 13031	ncRNA	0.040000	0.542289	
mm_32100.1	chr4	98546839	98547039	+	1	NA	NA	NA	305	NM_001005787	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.025000	0.542289	-99(GCCCTTTAAAAG,-,0.00),-98(CCCTTTAAAAGA,-,0.00),-97(CCTTTAAAAGAA,+,0.00)
mm_170750.1	chr2	156180136	156180336	-	1	NA	NA	NA	2	NM_001291114	170791	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.100000	0.621891	
mm_71027.1	chr8	33599500	33599700	+	1	NA	NA	NA	-21	NM_017374	19053	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	0.160000	0.781095	
mm_172024.1	chr6	118404621	118404821	-	1	NA	NA	NA	14696	NM_194339	213895	Mm.25269	NM_194339	ENSMUSG00000030138	Bms1	AA408648|AU020092|AU043373|BB007109|BC030906|Bms1l|mKIAA0187	BMS1, ribosome biogenesis factor	protein-coding	0.040000	0.557214	
mm_50404.1	chr6	48728049	48728249	+	1	NA	NA	NA	9528	NM_146167	231932	Mm.30479	NM_146167	ENSMUSG00000043931	Gimap7	IAN7|Ian3	GTPase, IMAP family member 7	protein-coding	0.010000	0.487562	
mm_148888.1	chr19	6871114	6871314	+	1	NA	NA	NA	-13003	NM_001081291	78317	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.010000	0.457711	
mm_52567.1	chr6	116264178	116264378	+	1	NA	NA	NA	59	NM_001290338	67492	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0.170000	0.791045	
mm_135032.1	chr16	32866254	32866454	-	1	NA	NA	NA	2012	NM_001200038	100502698	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Kiaa0226|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	0.005000	0.452736	
mm_135199.1	chr16	36532100	36532300	-	1	NA	NA	NA	29934	NM_013803	12374	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.005000	0.572139	
mm_102529.1	chr11	60935231	60935431	-	1	NA	NA	NA	3274	NM_008928	26397	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0.005000	0.547264	
mm_159995.1	chr6	118011308	118011508	+	1	NA	NA	NA	-129	NM_001316749	70727	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	0.175000	0.830846	
mm_38779.1	chr4	148075295	148075495	-	1	NA	NA	NA	12669	NM_009642	11610	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.050000	0.532338	
mm_11033.1	chr2	26916311	26916511	+	1	NA	NA	NA	-10	NM_013678	20931	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	0.065000	0.592040	
mm_129906.1	chr15	84055007	84055207	-	1	NA	NA	NA	10242	NM_029946	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	0.030000	0.512438	
mm_87257.1	chr10	41519637	41519837	+	1	NA	NA	NA	237	NM_016898	53599	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.150000	0.746269	
mm_32756.1	chr4	116687132	116687332	+	1	NA	NA	NA	-1210	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.000000	0.432836	
mm_109064.1	chr12	104344116	104344316	+	1	NA	NA	NA	5730	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.005000	0.462687	
mm_151485.1	chr19	58677061	58677261	+	1	NA	NA	NA	6796	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.020000	0.457711	
mm_99287.1	chr11	101322081	101322281	+	1	NA	NA	NA	-2882	NM_178932	237940	Mm.302277	NM_178932	ENSMUSG00000078651	Aoc2	RAO	amine oxidase, copper containing 2 (retina-specific)	protein-coding	0.005000	0.427861	
mm_57557.1	chr6	126921716	126921916	-	1	NA	NA	NA	23	NM_207210	101320	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	0.045000	0.592040	
mm_151280.1	chr19	55253872	55254072	+	1	NA	NA	NA	603	NM_027976	433256	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.025000	0.611940	
mm_72361.1	chr8	80494153	80494353	+	1	NA	NA	NA	208	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.000000	0.432836	-30(GTTTAAATAGGA,+,0.00)
mm_21134.1	chr2	154209818	154210018	-	1	NA	NA	NA	9538	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.010000	0.547264	
mm_149517.1	chr19	12436301	12436501	+	1	NA	NA	NA	8496	NM_019540	56093	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.000000	0.487562	
mm_83003.1	chr9	36729924	36730124	-	1	NA	NA	NA	-3366	NM_007691	12649	Mm.16753	NM_007691	ENSMUSG00000032113	Chek1	C85740|Chk1|rad27	checkpoint kinase 1	protein-coding	0.005000	0.293532	
mm_126934.1	chr15	91771272	91771472	+	1	NA	NA	NA	-66954	NM_207243	239611	Mm.486225	NM_207243		Muc19	MUC-19|sld	mucin 19	protein-coding	0.005000	0.358209	
mm_62497.1	chr7	101970117	101970317	+	1	NA	NA	NA	374	NM_133947	101706	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	0.095000	0.731343	
mm_84751.1	chr9	75541607	75541807	-	1	NA	NA	NA	17950	NM_016963	50875	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0.015000	0.512438	
mm_59629.1	chr7	28156621	28156821	+	1	NA	NA	NA	-13027	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.030000	0.597015	
mm_128355.1	chr15	39944434	39944634	-	1	NA	NA	NA	-540	NM_001347036	239393	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0.035000	0.597015	
mm_59513.1	chr7	27581169	27581369	+	1	NA	NA	NA	-10283	NM_001110208	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.035000	0.621891	
mm_42121.1	chr5	110879834	110880034	+	1	NA	NA	NA	131	NM_001267622	209683	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	0.165000	0.761194	
mm_104873.1	chr11	99418334	99418534	-	1	NA	NA	NA	3825	NM_010661	268482	Mm.436651	NM_010661	ENSMUSG00000020912	Krt12	AI835216|K12|Krt-12|Krt1-12	keratin 12	protein-coding	0.035000	0.532338	-61(TTCTTGAAAAGG,-,0.00)
mm_46968.1	chr5	115158047	115158247	-	1	NA	NA	NA	29	NM_175403	109154	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0.095000	0.741294	
mm_112929.1	chr13	20959580	20959780	+	1	NA	NA	NA	113619	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.005000	0.363184	
mm_46442.1	chr5	105083685	105083885	-	1	NA	NA	NA	26507	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.025000	0.537313	
mm_128181.1	chr15	34495128	34495328	-	1	NA	NA	NA	18	NM_008287	15473	Mm.491154	NM_008287	ENSMUSG00000022323	Rida	HR12|HRP12|Hrsp12	reactive intermediate imine deaminase A homolog	protein-coding	0.065000	0.557214	
mm_17779.1	chr2	32929655	32929855	-	1	NA	NA	NA	31500	NM_199302	227738	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0.020000	0.567164	
mm_137016.1	chr17	17837980	17838180	+	1	NA	NA	NA	7105	NM_001162909	75202	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0.065000	0.587065	-34(GTGCATTTAAGC,-,0.00),-32(GCATTTAAGCAC,+,0.00)
mm_8324.1	chr1	149831114	149831314	-	1	NA	NA	NA	91225	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.005000	0.422886	
mm_172757.1	chr8	85949186	85949386	+	1	NA	NA	NA	108284	NM_199446	102093	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding	0.015000	0.462687	
mm_54625.1	chr6	38687927	38688127	-	1	NA	NA	NA	24958	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.025000	0.343284	-6(TTTTTTAAGGAC,+,0.00)
mm_114373.1	chr13	63113187	63113387	+	1	NA	NA	NA	-126742	NR_110520	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.010000	0.457711	
mm_172247.1	chr6	69378400	69378600	-	1	NA	NA	NA	-51326	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.363184	
mm_45372.1	chr5	66042543	66042743	-	1	NA	NA	NA	-38358	NR_027961	231253	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.000000	0.303483	
mm_130803.1	chr15	101709520	101709720	-	1	NA	NA	NA	3271	NM_027011	110308	Mm.451847	NM_027011	ENSMUSG00000061527	Krt5	3300001P10Rik|AW146334|CK5|K5|Krt2-5|Tfip8	keratin 5	protein-coding	0.000000	0.487562	
mm_109606.1	chr12	112721417	112721617	+	1	NA	NA	NA	-657	NM_001024602	217882	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0.040000	0.606965	
mm_74929.1	chr8	25601980	25602180	-	1	NA	NA	NA	-204	NM_001001735	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.105000	0.676617	
mm_56045.1	chr6	86737595	86737795	-	1	NA	NA	NA	-4317	NM_011818	23885	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	0.025000	0.378109	
mm_24569.1	chr3	93444338	93444538	+	1	NA	NA	NA	2108	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.080000	0.651741	
mm_68619.1	chr7	117475080	117475280	-	1	NA	NA	NA	94201	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.005000	0.512438	
mm_125627.1	chr15	61989326	61989526	+	1	NA	NA	NA	4085	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.035000	0.572139	
mm_107387.1	chr12	33250039	33250239	+	1	NA	NA	NA	-52376	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.020000	0.577114	
mm_113802.1	chr13	46430587	46430787	+	1	NA	NA	NA	12387	NM_001081425	666794	Mm.38269	NM_001081425	ENSMUSG00000038132	Rbm24	6330546B05Rik|AI606861	RNA binding motif protein 24	protein-coding	0.025000	0.398010	
mm_89084.1	chr10	83564956	83565156	+	1	NA	NA	NA	21115	NM_001033375	319277	Mm.491194	NM_001033375	ENSMUSG00000034560	Washc4	A230046K03Rik|AA589518|Kiaa1033|mKIAA1033	WASH complex subunit 4	protein-coding	0.015000	0.407960	
mm_74439.1	chr8	3803233	3803433	-	1	NA	NA	NA	28	NR_024198	19785		NR_024198		Rprl3	RPRH4|Rmrp4	ribonuclease P RNA-like 3	ncRNA	0.040000	0.557214	
mm_62332.1	chr7	100493739	100493939	+	1	NA	NA	NA	481	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.005000	0.502488	
mm_15004.1	chr2	152476942	152477142	+	1	NA	NA	NA	-21	NM_176950	319579	Mm.190454	NM_176950	ENSMUSG00000049560	Defb20	9230107O10Rik|BD-20|mBD-20	defensin beta 20	protein-coding	0.010000	0.517413	
mm_97282.1	chr11	76133872	76134072	+	1	NA	NA	NA	45658	NM_026664	68299	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	0.005000	0.447761	
mm_79471.1	chr9	56864985	56865185	+	1	NA	NA	NA	-19	NM_139001	121021	Mm.41329	NM_139001	ENSMUSG00000032911	Cspg4	4732461B14Rik|AN2|NG2	chondroitin sulfate proteoglycan 4	protein-coding	0.090000	0.636816	
mm_53421.1	chr6	134035604	134035804	+	1	NA	NA	NA	4	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.055000	0.557214	-92(TCCTTTAAGAGG,-,0.00),-91(CCTTTAAGAGGC,+,0.00)
mm_153401.1	chr19	40508906	40509106	-	1	NA	NA	NA	4730	NM_178362	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.005000	0.507463	
mm_118005.1	chr13	100616549	100616749	-	1	NA	NA	NA	295	NM_178410	218518	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	0.100000	0.691542	
mm_147909.1	chr18	65393915	65394115	-	1	NA	NA	NA	-127	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.015000	0.542289	
mm_142189.1	chr17	36890047	36890247	-	1	NA	NA	NA	-22	NM_001172168	195359	Mm.32606	NM_001033235	ENSMUSG00000073399	Trim40	Gm319|Gm35|Gm865	tripartite motif-containing 40	protein-coding	0.005000	0.432836	
mm_40177.1	chr5	36001968	36002168	+	1	NA	NA	NA	108749	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	0.010000	0.507463	
mm_147451.1	chr18	46572851	46573051	-	1	NA	NA	NA	1582	NM_173394	225471	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.015000	0.477612	
mm_84706.1	chr9	72726392	72726592	-	1	NA	NA	NA	64145	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.000000	0.447761	
mm_165693.1	chr3	93443905	93444105	+	1	NA	NA	NA	1675	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.085000	0.626866	
mm_68036.1	chr7	101301951	101302151	-	1	NA	NA	NA	37	NM_001111111	73683	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.115000	0.731343	
mm_143272.1	chr17	65654006	65654206	-	1	NA	NA	NA	-11902	NM_001146002	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.010000	0.383085	
mm_24562.1	chr3	93443605	93443805	+	1	NA	NA	NA	1375	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.075000	0.606965	
mm_119179.1	chr14	32165748	32165948	+	1	NA	NA	NA	59	NM_019744	27057	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.065000	0.597015	
mm_154719.1	chrX	9270151	9270351	+	1	NA	NA	NA	-2533	NM_023500	22439	Mm.56468	NM_023500	ENSMUSG00000015342	Xk	1810038K19Rik|XRG1|Xkh	X-linked Kx blood group	protein-coding	0.005000	0.308458	
mm_117543.1	chr13	83727078	83727278	-	1	NA	NA	NA	-928	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.070000	0.611940	
mm_165161.1	chr2	25079088	25079288	+	1	NA	NA	NA	-1135	NM_028093	72090	Mm.33403	NM_028093	ENSMUSG00000036813	Entpd8	-	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding	0.005000	0.532338	
mm_88323.1	chr10	75566080	75566280	+	1	NA	NA	NA	-2482	NM_001305992	14598	Mm.4559	NM_008116	ENSMUSG00000006345	Ggt1	CD224|GGT|GGT 1|GGT-1|Ggtp|dwg	gamma-glutamyltransferase 1	protein-coding	0.020000	0.522388	
mm_60241.1	chr7	43713331	43713531	+	1	NA	NA	NA	864	NM_001039042	626834	Mm.389891	NM_001039042	ENSMUSG00000054046	Klk13	Egfbp-2|mGk-13	kallikrein related-peptidase 13	protein-coding	0.030000	0.592040	
mm_147749.1	chr18	61196281	61196481	-	1	NA	NA	NA	15215	NM_007885	13521	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	0.010000	0.442786	
mm_85916.1	chr9	111062725	111062925	-	1	NA	NA	NA	-5307	NM_001302376	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.010000	0.527363	
mm_69649.1	chr7	139360811	139361011	-	1	NA	NA	NA	-28198	NM_183144	212111	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.005000	0.407960	
mm_121815.1	chr14	20394977	20395177	-	1	NA	NA	NA	-1522	NM_025440	66242	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16	mitochondrial ribosomal protein S16	protein-coding	0.010000	0.477612	
mm_46363.1	chr5	103377177	103377377	-	1	NA	NA	NA	-47915	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.015000	0.507463	85(CTTTTTAAAAGG,+,0.00),85(CTTTTTAAAAGG,-,0.00)
mm_37621.1	chr4	127252279	127252479	-	1	NA	NA	NA	8595	NM_030252	80284	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	0.025000	0.562189	
mm_103399.1	chr11	75438162	75438362	-	1	NA	NA	NA	1239	NM_008878	18816	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	0.030000	0.582090	
mm_142107.1	chr17	35835819	35836019	-	1	NA	NA	NA	2382	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.020000	0.557214	
mm_101215.1	chr11	20089530	20089730	-	1	NA	NA	NA	23321	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.000000	0.477612	
mm_28425.1	chr3	90455001	90455201	-	1	NA	NA	NA	10765	NM_008727	18160	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.055000	0.577114	
mm_131772.1	chr16	22894315	22894515	+	1	NA	NA	NA	-29	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.020000	0.601990	
mm_161449.1	chr15	74634736	74634936	-	1	NA	NA	NA	1482	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.010000	0.502488	
mm_1186.1	chr1	62522538	62522738	+	1	NA	NA	NA	-180679	NM_001077406	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.000000	0.253731	
mm_57701.1	chr6	128526612	128526812	-	1	NA	NA	NA	8	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.015000	0.437811	
mm_115332.1	chr13	112474715	112474915	+	1	NA	NA	NA	10745	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.025000	0.373134	
mm_94536.1	chr11	9119960	9120160	+	1	NA	NA	NA	1553	NM_001159402	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.010000	0.273632	
mm_16449.1	chr2	180456224	180456424	+	1	NA	NA	NA	-4654	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.090000	0.686567	
mm_20039.1	chr2	120046987	120047187	-	1	NA	NA	NA	13654	NM_145378	211429	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	0.005000	0.592040	
mm_153609.1	chr19	43968400	43968600	-	1	NA	NA	NA	18020	NM_030703	93721	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	0.030000	0.587065	
mm_154796.1	chrX	13256598	13256798	+	1	NA	NA	NA	-8965	NR_045429	72122	Mm.75434	NR_045429	ENSMUSG00000100714	2010308F09Rik	-	RIKEN cDNA 2010308F09 gene	ncRNA	0.010000	0.537313	
mm_32902.1	chr4	119105943	119106143	+	1	NA	NA	NA	-2702	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.040000	0.592040	49(TCCTTTAAGGGC,+,0.00),50(CCTTTAAGGGCT,+,0.00)
mm_151070.1	chr19	47511007	47511207	+	1	NA	NA	NA	-1875	NR_045322	100503104	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0.020000	0.432836	
mm_95767.1	chr11	54908446	54908646	+	1	NA	NA	NA	5692	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.015000	0.522388	
mm_164696.1	chr17	48517949	48518149	-	1	NA	NA	NA	63148	NM_152823	76589	Mm.311629	NM_152823	ENSMUSG00000043592	Unc5cl	2510009H09Rik|BB155270|Zud	unc-5 family C-terminal like	protein-coding	0.005000	0.457711	
mm_1075.1	chr1	59481997	59482197	+	1	NA	NA	NA	-50	NM_008057	14369	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.090000	0.691542	
mm_35017.1	chr4	3835499	3835699	-	1	NA	NA	NA	56	NM_026147	67427	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.125000	0.686567	-34(TGCTTTATAAGC,-,0.00),-32(CTTTATAAGCGC,+,0.00)
mm_15168.1	chr2	154013581	154013781	+	1	NA	NA	NA	5405	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.015000	0.452736	
mm_13540.1	chr2	110721503	110721703	+	1	NA	NA	NA	109	NM_172979	269328	Mm.32566	NM_172979	ENSMUSG00000050808	Muc15	4732460E09|D730046L02Rik|MUC-15	mucin 15	protein-coding	0.015000	0.497512	
mm_17686.1	chr2	32319297	32319497	-	1	NA	NA	NA	937	NR_029811	387239		NR_029811	ENSMUSG00000092807	Mir199b	Mirn199b|mir-199b	microRNA 199b	ncRNA	0.010000	0.398010	
mm_124132.1	chr14	84476291	84476491	-	1	NA	NA	NA	33	NR_015539	319903	Mm.440481	NR_015539		9630013A20Rik	-	RIKEN cDNA 9630013A20 gene	ncRNA	0.020000	0.402985	
mm_171885.1	chr5	35554039	35554239	+	1	NA	NA	NA	20931	NM_030208	78890	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	0.040000	0.527363	
mm_14012.1	chr2	122147625	122147825	+	1	NA	NA	NA	38	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.065000	0.577114	-73(AACTATATAAGA,-,0.00)
mm_28282.1	chr3	88950430	88950630	-	1	NA	NA	NA	-248	NM_001164533	65111	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0.150000	0.791045	
mm_144568.1	chr18	31777386	31777586	+	1	NA	NA	NA	-11673	NM_027002	69241	Mm.279898	NM_027002	ENSMUSG00000024258	Polr2d	2310002G05Rik|2610028L19Rik|HSRBP4|RBP4	polymerase (RNA) II (DNA directed) polypeptide D	protein-coding	0.020000	0.412935	
mm_166020.1	chr4	122689302	122689502	+	1	NA	NA	NA	143	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	0.005000	0.472637	
mm_111020.1	chr12	79017275	79017475	-	1	NA	NA	NA	-10098	NM_178745	268567	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.005000	0.472637	
mm_137916.1	chr17	32284691	32284891	+	1	NA	NA	NA	-658	NM_020508	57261	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0.130000	0.726368	
mm_73516.1	chr8	107436288	107436488	+	1	NA	NA	NA	-10	NM_025830	66894	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.145000	0.776119	
mm_171924.1	chr5	5998737	5998937	+	1	NA	NA	NA	-249520	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.005000	0.517413	
mm_44511.1	chr5	24329177	24329377	-	1	NA	NA	NA	314	NM_001294162	16511	Mm.6539	NM_013569	ENSMUSG00000038319	Kcnh2	AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding	0.030000	0.691542	
mm_127904.1	chr15	9516378	9516578	-	1	NA	NA	NA	13398	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.005000	0.318408	40(TTTTATAAAGAC,+,0.00)
mm_26486.1	chr3	145027266	145027466	+	1	NA	NA	NA	5410	NM_017474	23844	Mm.33483	NM_017474	ENSMUSG00000028255	Clca1	Clca2|Clca3|gob-5|gob5	chloride channel accessory 1	protein-coding	0.005000	0.442786	
mm_90570.1	chr10	128231663	128231863	+	1	NA	NA	NA	-300	NM_001164080	21853	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0.005000	0.393035	
mm_83642.1	chr9	49504651	49504851	-	1	NA	NA	NA	-13537	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.020000	0.427861	
mm_97149.1	chr11	75461533	75461733	+	1	NA	NA	NA	94	NR_030711	100042498	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0.090000	0.656716	
mm_58176.1	chr6	142757146	142757346	-	1	NA	NA	NA	560	NM_009908	12764	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.020000	0.512438	
mm_153444.1	chr19	40996029	40996229	-	1	NA	NA	NA	-1594	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.015000	0.472637	
mm_150453.1	chr19	38132703	38132903	+	1	NA	NA	NA	22	NM_001170959	110855	Mm.450141	NM_033614	ENSMUSG00000024992	Pde6c	cpfl1	phosphodiesterase 6C, cGMP specific, cone, alpha prime	protein-coding	0.005000	0.457711	
mm_68264.1	chr7	105595056	105595256	-	1	NA	NA	NA	4960	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.015000	0.522388	
mm_142307.1	chr17	42742078	42742278	-	1	NA	NA	NA	1	NM_001033493	435529	Mm.136350	NM_001033493	ENSMUSG00000057899	Adgrf2	Gpr111|PGR20	adhesion G protein-coupled receptor F2	protein-coding	0.020000	0.572139	
mm_140366.1	chr17	86962986	86963186	+	1	NA	NA	NA	-25	NM_145491	104215	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.115000	0.776119	
mm_157057.1	chrX	8131626	8131826	-	1	NA	NA	NA	1132	NM_001290783	73447	Mm.284162	NM_026137	ENSMUSG00000031166	Wdr13	1700060B08Rik|5730411P10Rik|DXHXS7467e|W51679|mMg21	WD repeat domain 13	protein-coding	0.010000	0.492537	
mm_124493.1	chr14	121793565	121793765	-	1	NA	NA	NA	4069	NM_134074	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.005000	0.422886	
mm_106478.1	chr11	120142791	120142991	-	1	NA	NA	NA	8460	NM_001164799	72055	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0.005000	0.472637	
mm_157617.1	chrX	56212809	56213009	-	1	NA	NA	NA	-28	NM_001033423	331416	Mm.387260	NM_001033423	ENSMUSG00000073177	Gm773	-	predicted gene 773	protein-coding	0.030000	0.512438	
mm_63963.1	chr7	139943872	139944072	+	1	NA	NA	NA	116	NM_009482	22286	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	0.125000	0.701493	
mm_132048.1	chr16	29209686	29209886	+	1	NA	NA	NA	91	NM_013751	27281	Mm.103650	NM_013751	ENSMUSG00000022525	Hrasls	2810012B06Rik|A-C1|HRSL1|Hrasrs	HRAS-like suppressor	protein-coding	0.015000	0.582090	
mm_97120.1	chr11	74831146	74831346	+	1	NA	NA	NA	322	NM_010813	17428	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.105000	0.696517	
mm_161630.1	chr16	88751550	88751750	-	1	NA	NA	NA	-22	NM_010671	16699	Mm.353193	NM_010671	ENSMUSG00000050224	Krtap13	4C32	keratin associated protein 13	protein-coding	0.015000	0.492537	-32(GAGTATATAAAC,-,0.00)
mm_86775.1	chr10	20148583	20148783	+	1	NA	NA	NA	-237	NM_008635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.150000	0.716418	
mm_71180.1	chr8	40861736	40861936	+	1	NA	NA	NA	-531	NM_007514	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.020000	0.353234	-35(TTCTTTAAAAAC,-,0.00),-33(CTTTAAAAACCC,+,0.00)
mm_11559.1	chr2	32775680	32775880	+	1	NA	NA	NA	-41	NM_178595	329384	Mm.268037	NM_178595	ENSMUSG00000053746	Ptrh1	2210013M04Rik|AW046744	peptidyl-tRNA hydrolase 1 homolog	protein-coding	0.075000	0.616915	
mm_68355.1	chr7	106510783	106510983	-	1	NA	NA	NA	-69810	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.015000	0.407960	
mm_101705.1	chr11	42000213	42000413	-	1	NA	NA	NA	401	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding	0.035000	0.457711	
mm_84058.1	chr9	58198351	58198551	-	1	NA	NA	NA	3264	NM_001161535	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.095000	0.671642	
mm_123842.1	chr14	70652984	70653184	-	1	NA	NA	NA	0	NM_181345	328440	Mm.347749	NM_181345	ENSMUSG00000047911	Npm2	-	nucleophosmin/nucleoplasmin 2	protein-coding	0.010000	0.572139	
mm_83906.1	chr9	56243941	56244141	-	1	NA	NA	NA	-82971	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.025000	0.517413	
mm_125678.1	chr15	66615626	66615826	+	1	NA	NA	NA	38154	NM_001081409	239510	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	0.025000	0.502488	
mm_54330.1	chr6	30640577	30640777	-	1	NA	NA	NA	1459	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.035000	0.507463	
mm_124761.1	chr15	6647997	6648197	+	1	NA	NA	NA	-60284	NM_030168	78757	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.000000	0.338308	-34(CTATTTATAGAA,+,0.00)
mm_71790.1	chr8	66860151	66860351	+	1	NA	NA	NA	34	NM_001163564	234344	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0.100000	0.636816	
mm_47887.1	chr5	134703426	134703626	-	1	NA	NA	NA	-14936	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.005000	0.592040	
mm_153939.1	chr19	47464328	47464528	-	1	NA	NA	NA	-17	NM_008018	14218	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.140000	0.810945	
mm_87527.1	chr10	53342341	53342541	+	1	NA	NA	NA	4755	NM_001141927	18821	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0.010000	0.432836	
mm_63148.1	chr7	123369648	123369848	+	1	NA	NA	NA	167	NM_001122643	70497	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.160000	0.786070	
mm_56857.1	chr6	118197248	118197448	-	1	NA	NA	NA	396	NM_009050	19713	Mm.57199	NM_009050	ENSMUSG00000030110	Ret	PTC|RET51|RET9|c-Ret	ret proto-oncogene	protein-coding	0.100000	0.726368	
mm_135610.1	chr16	52250263	52250463	-	1	NA	NA	NA	202718	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.020000	0.412935	
mm_145699.1	chr18	62657108	62657308	+	1	NA	NA	NA	-60944	NM_001001803	408198	Mm.478742	NM_001001803	ENSMUSG00000060201	Spink7	EG408198|Ecg2	serine peptidase inhibitor, Kazal type 7 (putative)	protein-coding	0.000000	0.442786	
mm_96195.1	chr11	62005284	62005484	+	1	NA	NA	NA	48621	NM_001310526	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.040000	0.631841	
mm_102699.1	chr11	66061211	66061411	-	1	NA	NA	NA	107240	NM_001099633	237806	Mm.264210	NM_001099633	ENSMUSG00000056752	Dnah9	9030022M04|A230091C01|C230051G16|D11Ertd686e|Dnahc9|mKIAA0357	dynein, axonemal, heavy chain 9	protein-coding	0.010000	0.457711	
mm_124296.1	chr14	103055019	103055219	-	1	NA	NA	NA	8107	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.035000	0.537313	
mm_161933.1	chr18	84649984	84650184	-	1	NA	NA	NA	11	NM_177450	338403	Mm.23278	NM_177450	ENSMUSG00000056162	Cndp1	AI746433|Cn1	carnosine dipeptidase 1 (metallopeptidase M20 family)	protein-coding	0.015000	0.482587	
mm_18081.1	chr2	44539276	44539476	-	1	NA	NA	NA	322246	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.005000	0.427861	
mm_151045.1	chr19	47024557	47024757	+	1	NA	NA	NA	-9468	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.025000	0.462687	
mm_136542.1	chr16	97922467	97922667	-	1	NA	NA	NA	66	NM_174847	207781	Mm.1465	NM_174847	ENSMUSG00000045975	C2cd2	5730563M15|5830404H04Rik|AI314146|AI449533|BF168443|ORF25|mKIAA4045	C2 calcium-dependent domain containing 2	protein-coding	0.110000	0.691542	
mm_57702.1	chr6	128526819	128527019	-	1	NA	NA	NA	-199	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.005000	0.333333	
mm_157566.1	chrX	52428744	52428944	-	1	NA	NA	NA	-6329	NR_030497	751531		NR_030497	ENSMUSG00000076214	Mir717	Mirn717|mir-717|mmu-mir-717	microRNA 717	ncRNA	0.025000	0.482587	
mm_42538.1	chr5	115908431	115908631	+	1	NA	NA	NA	62875	NM_007708	12704	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0.030000	0.537313	
mm_118037.1	chr13	101692404	101692604	-	1	NA	NA	NA	126	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.035000	0.562189	-69(CACCTTAAATGG,-,0.00),-67(CCTTAAATGGTG,+,0.00)
mm_14107.1	chr2	125673589	125673789	+	1	NA	NA	NA	589	NM_025613	58521	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	0.040000	0.417910	
mm_132032.1	chr16	27389004	27389204	+	1	NA	NA	NA	148	NM_001289436	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.155000	0.771144	
mm_111947.1	chr12	109068262	109068462	-	1	NA	NA	NA	-145	NM_001163175	380785	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0.155000	0.776119	
mm_78021.1	chr9	13749160	13749360	+	1	NA	NA	NA	79	NR_024025	77116	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.135000	0.751244	
mm_160886.1	chr11	69834752	69834952	-	1	NA	NA	NA	-3	NM_198862	216856	Mm.151293	NM_198862	ENSMUSG00000051790	Nlgn2	NL2	neuroligin 2	protein-coding	0.025000	0.557214	
mm_130804.1	chr15	101709556	101709756	-	1	NA	NA	NA	3235	NM_027011	110308	Mm.451847	NM_027011	ENSMUSG00000061527	Krt5	3300001P10Rik|AW146334|CK5|K5|Krt2-5|Tfip8	keratin 5	protein-coding	0.000000	0.487562	
mm_108943.1	chr12	102282766	102282966	+	1	NA	NA	NA	-208	NM_177620	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.060000	0.661692	
mm_117901.1	chr13	99427229	99427429	-	1	NA	NA	NA	-14503	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.035000	0.562189	
mm_30533.1	chr4	3574763	3574963	+	1	NA	NA	NA	-16	NM_054089	116940	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	0.115000	0.666667	
mm_122028.1	chr14	29500940	29501140	-	1	NA	NA	NA	220824	NM_009785	12294	Mm.386754	NM_009785	ENSMUSG00000021991	Cacna2d3	Cacnad3|alapha2delta3	calcium channel, voltage-dependent, alpha2/delta subunit 3	protein-coding	0.015000	0.487562	
mm_108219.1	chr12	77064318	77064518	+	1	NA	NA	NA	-102170	NM_001146176	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.005000	0.542289	
mm_5316.1	chr1	22783396	22783596	-	1	NA	NA	NA	22228	NM_001012625	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.015000	0.373134	
mm_131353.1	chr16	13702479	13702679	+	1	NA	NA	NA	-27257	NR_040574	76684	Mm.491043	NR_040574		Pla2g10os	1810007I06Rik	phospholipase A2, group X, opposite strand	ncRNA	0.000000	0.467662	
mm_10772.1	chr2	24276825	24277025	+	1	NA	NA	NA	-29	NM_001146088	54450	Mm.29261	NM_019451	ENSMUSG00000026983	Il1f5	AI413231|Fil1delta|IL-36Ra|IL36RN|Il-1h3|Il1hy1	interleukin 1 family, member 5 (delta)	protein-coding	0.000000	0.442786	
mm_72290.1	chr8	75213193	75213393	+	1	NA	NA	NA	-651	NM_029182	75141	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.100000	0.691542	
mm_167897.1	chrX	73493172	73493372	+	1	NA	NA	NA	9671	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.015000	0.517413	
mm_78764.1	chr9	43309656	43309856	+	1	NA	NA	NA	-1007	NM_023655	72169	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	0.010000	0.457711	
mm_53712.1	chr6	143206155	143206355	+	1	NA	NA	NA	39025	NM_029250	75320	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0.015000	0.373134	
mm_168553.1	chr11	6452980	6453180	+	1	NA	NA	NA	-8637	NM_001347064	77605	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av	H2A histone family, member V	protein-coding	0.050000	0.512438	-27(ACCTATATAAAG,-,0.00)
mm_159204.1	chr2	121141797	121141997	+	1	NA	NA	NA	-196	NM_029475	75894	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	0.025000	0.398010	
mm_123603.1	chr14	67933599	67933799	-	1	NA	NA	NA	-127	NM_177780	68813	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0.140000	0.746269	
mm_167211.1	chr8	3493128	3493328	+	1	NA	NA	NA	90	NM_080461	140482	Mm.299073	NM_080461	ENSMUSG00000047264	Zfp358	Zfend	zinc finger protein 358	protein-coding	0.110000	0.776119	
mm_57180.1	chr6	122848411	122848611	-	1	NA	NA	NA	7646	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.000000	0.378109	-50(CAATTTTAAAGG,-,0.00)
mm_81613.1	chr9	110766530	110766730	+	1	NA	NA	NA	2949	NM_010859	17897	Mm.7353	NM_010859	ENSMUSG00000059741	Myl3	MLC1s|MLC1v|Mylc|VLC1	myosin, light polypeptide 3	protein-coding	0.025000	0.592040	
mm_104808.1	chr11	98775277	98775477	-	1	NA	NA	NA	0	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.065000	0.626866	
mm_100973.1	chr11	6719972	6720172	-	1	NA	NA	NA	-35	NR_046025	626419	Mm.390334	NR_046025	ENSMUSG00000086808	Gm11981	OTTMUSG00000005129	predicted gene 11981	ncRNA	0.010000	0.557214	
mm_51860.1	chr6	90474202	90474402	+	1	NA	NA	NA	11676	NM_023184	66277	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.060000	0.527363	26(GTTTTTAAATGC,+,0.00)
mm_98845.1	chr11	97657348	97657548	+	1	NA	NA	NA	-5964	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.000000	0.512438	
mm_136290.1	chr16	91406796	91406996	-	1	NA	NA	NA	661	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.010000	0.542289	
mm_139594.1	chr17	57226741	57226941	+	1	NA	NA	NA	1295	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.025000	0.552239	
mm_53431.1	chr6	134045818	134046018	+	1	NA	NA	NA	10218	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.010000	0.512438	
mm_87294.1	chr10	42502140	42502340	+	1	NA	NA	NA	186	NM_017472	54198	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.165000	0.731343	
mm_50295.1	chr6	47468031	47468231	+	1	NA	NA	NA	13807	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.010000	0.383085	
mm_14823.1	chr2	147012669	147012869	+	1	NA	NA	NA	-291	NM_011917	24128	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	0.045000	0.522388	
mm_141387.1	chr17	29095313	29095513	-	1	NA	NA	NA	1644	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.085000	0.601990	
mm_34450.1	chr4	148001886	148002086	+	1	NA	NA	NA	1264	NM_008725	230899	Mm.482123	NM_008725	ENSMUSG00000041616	Nppa	ANP|Anf|Pnd	natriuretic peptide type A	protein-coding	0.030000	0.482587	
mm_21760.1	chr2	164840049	164840249	-	1	NA	NA	NA	6376	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.040000	0.577114	
mm_116222.1	chr13	32939225	32939425	-	1	NA	NA	NA	-26188	NM_011454	20708	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	0.005000	0.522388	
mm_105114.1	chr11	101020414	101020614	-	1	NA	NA	NA	-9826	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.025000	0.422886	
mm_125471.1	chr15	54410573	54410773	+	1	NA	NA	NA	-101	NM_173422	239447	Mm.82400	NM_173422	ENSMUSG00000038591	Colec10	CL-L1	collectin sub-family member 10	protein-coding	0.005000	0.398010	
mm_21015.1	chr2	152397201	152397401	-	1	NA	NA	NA	745	NM_011438	20667	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.145000	0.776119	
mm_161292.1	chr14	26258539	26258739	+	1	NA	NA	NA	-3619	NM_001177538	100039227	Mm.428840	NM_001177538	ENSMUSG00000072675	Duxbl2	ENSMUSG00000072675|Gm10394	double homeobox B-like 2	protein-coding	0.030000	0.597015	
mm_102939.1	chr11	69602359	69602559	-	1	NA	NA	NA	3501	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.005000	0.527363	
mm_19844.1	chr2	113347916	113348116	-	1	NA	NA	NA	20280	NM_010230	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.005000	0.477612	
mm_54656.1	chr6	39087536	39087736	-	1	NA	NA	NA	-20050	NR_040523	69986	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.040000	0.542289	
mm_140455.1	chr17	88668549	88668749	+	1	NA	NA	NA	-11	NM_023630	71828	Mm.61330	NM_023630	ENSMUSG00000024154	Gtf2a1l	1700011N16Rik|Alf|Gtf2a1lf	general transcription factor IIA, 1-like	protein-coding	0.075000	0.626866	
mm_48366.1	chr5	139460522	139460722	-	1	NA	NA	NA	-88	NM_028469	73212	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.085000	0.646766	
mm_10409.1	chr2	13578820	13579020	+	1	NA	NA	NA	4609	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.005000	0.472637	
mm_82908.1	chr9	32928830	32929030	-	1	NA	NA	NA	36	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.015000	0.492537	-6(CCTTTTAGACAG,+,0.00)
mm_89586.1	chr10	95779886	95780086	+	1	NA	NA	NA	-160677	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.015000	0.437811	
mm_49170.1	chr6	14901215	14901415	+	1	NA	NA	NA	-34	NM_053242	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.095000	0.611940	
mm_21589.1	chr2	164237361	164237561	-	1	NA	NA	NA	880	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.015000	0.442786	
mm_25034.1	chr3	98222056	98222256	+	1	NA	NA	NA	0	NM_026328	67709	Mm.46306	NM_026328	ENSMUSG00000027876	Reg4	2010002L15Rik|GISP|RELP	regenerating islet-derived family, member 4	protein-coding	0.025000	0.457711	
mm_87966.1	chr10	63397151	63397351	+	1	NA	NA	NA	10688	NM_013888	30045	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.040000	0.502488	
mm_30837.1	chr4	22371040	22371240	+	1	NA	NA	NA	13597	NR_104380	269514	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	0.010000	0.378109	
mm_106247.1	chr11	117813354	117813554	-	1	NA	NA	NA	3787	NM_009304	20973	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0.020000	0.616915	
mm_72280.1	chr8	75100264	75100464	+	1	NA	NA	NA	6746	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.015000	0.447761	
mm_66635.1	chr7	45525289	45525489	-	1	NA	NA	NA	879	NM_008654	17872	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	0.030000	0.557214	-12(CCCTTTCTAGCC,+,0.00)
mm_46076.1	chr5	92323741	92323941	-	1	NA	NA	NA	4238	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.015000	0.378109	
mm_115178.1	chr13	108316301	108316501	+	1	NA	NA	NA	64	NM_178683	218581	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.135000	0.711443	
mm_98820.1	chr11	97329443	97329643	+	1	NA	NA	NA	13827	NM_025927	67036	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.010000	0.442786	
mm_143607.1	chr17	78651440	78651640	-	1	NA	NA	NA	85020	NM_011500	268980	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	0.010000	0.343284	22(CCTTTAAAATAC,+,0.00)
mm_70076.1	chr7	142653130	142653330	-	1	NA	NA	NA	1766	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.005000	0.497512	
mm_15914.1	chr2	165064050	165064250	+	1	NA	NA	NA	8514	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.010000	0.412935	
mm_99850.1	chr11	109362762	109362962	+	1	NA	NA	NA	68	NM_010303	14674	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0.130000	0.825871	
mm_99823.1	chr11	108920250	108920450	+	1	NA	NA	NA	1	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.135000	0.751244	-34(GTCCCTTTAAGG,-,0.00),-32(CCCTTTAAGGCG,+,0.00),-31(CCTTTAAGGCGG,+,0.00)
mm_85441.1	chr9	104102909	104103109	-	1	NA	NA	NA	23634	NM_145700	252837	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	0.000000	0.472637	
mm_58293.1	chr6	145865247	145865447	-	1	NA	NA	NA	73	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.065000	0.572139	
mm_164625.1	chr17	31295713	31295913	+	1	NA	NA	NA	330	NM_153062	224674	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.035000	0.512438	
mm_103197.1	chr11	70648912	70649112	-	1	NA	NA	NA	1725	NM_027445	70510	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0.000000	0.442786	
mm_141177.1	chr17	26841409	26841609	-	1	NA	NA	NA	56	NM_008700	18091	Mm.41974	NM_008700	ENSMUSG00000015579	Nkx2-5	Csx|Nkx-2.5|Nkx2.5|tinman	NK2 homeobox 5	protein-coding	0.080000	0.726368	
mm_132857.1	chr16	48303820	48304020	+	1	NA	NA	NA	-6354	NM_028615	73703	Mm.27857	NM_028615	ENSMUSG00000072419	Dppa2	2410088E07Rik|C80932|D19Mgi18|ECAT15-2	developmental pluripotency associated 2	protein-coding	0.010000	0.472637	
mm_93496.1	chr10	112230998	112231198	-	1	NA	NA	NA	-40025	NM_001025581	268345	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0.005000	0.467662	
mm_76218.1	chr8	83571667	83571867	-	1	NA	NA	NA	5009	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.025000	0.572139	
mm_59288.1	chr7	24981644	24981844	+	1	NA	NA	NA	5923	NR_106014	102465634		NR_106014	ENSMUSG00000099258	Mir7047	Gm27270|mmu-mir-7047	microRNA 7047	ncRNA	0.015000	0.572139	
mm_15073.1	chr2	153114391	153114591	+	1	NA	NA	NA	6023	NM_010407	15162	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.020000	0.507463	
mm_153662.1	chr19	44395648	44395848	-	1	NA	NA	NA	11961	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.432836	
mm_167383.1	chr8	94355094	94355294	+	1	NA	NA	NA	25986	NM_001205311	20497	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.010000	0.452736	
mm_16702.1	chr2	6949340	6949540	-	1	NA	NA	NA	-20718	NR_027890	68144	Mm.483289	NM_026575		5031426D15Rik	-	RIKEN cDNA 5031426D15 gene	ncRNA	0.005000	0.348259	
mm_76799.1	chr8	104034221	104034421	-	1	NA	NA	NA	-67304	NM_009868	12562	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.000000	0.388060	64(CCTTATAGAAGC,+,0.00)
mm_166543.1	chr6	34419316	34419516	+	1	NA	NA	NA	7054	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.005000	0.422886	
mm_158241.1	chrX	106603526	106603726	-	1	NA	NA	NA	53	NM_001281862	58861	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	0.010000	0.462687	
mm_166718.1	chr6	119902357	119902557	+	1	NA	NA	NA	-241	NM_001166382	19365	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.050000	0.557214	1(GAGTTTAAAAGC,-,0.00)
mm_160017.1	chr6	129660324	129660524	-	1	NA	NA	NA	132	NM_010653	16642	Mm.347927	NM_010653	ENSMUSG00000052736	Klrc2	NKG2C	killer cell lectin-like receptor subfamily C, member 2	protein-coding	0.025000	0.507463	
mm_146133.1	chr18	74707926	74708126	+	1	NA	NA	NA	70429	NR_028560	100217466		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	0.025000	0.557214	
mm_150659.1	chr19	41981236	41981436	+	1	NA	NA	NA	-200	NM_028152	72199	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	0.100000	0.766169	
mm_165175.1	chr2	27487503	27487703	+	1	NA	NA	NA	-11930	NM_001113574	67382	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	0.005000	0.457711	-88(TCCTTTAAACCC,+,0.00)
mm_43259.1	chr5	130223821	130224021	+	1	NA	NA	NA	1586	NM_027854	71667	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0.020000	0.442786	12(TGGTTTTAAAGC,-,0.00)
mm_84967.1	chr9	83834455	83834655	-	1	NA	NA	NA	-134	NM_009445	22137	Mm.1904	NM_009445	ENSMUSG00000038379	Ttk	AL022661|Esk1|Mps1|PYT|esk	Ttk protein kinase	protein-coding	0.100000	0.676617	
mm_93811.1	chr10	121310919	121311119	-	1	NA	NA	NA	170	NM_029057	74694	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik	TBC1 domain family, member 30	protein-coding	0.125000	0.726368	
mm_103807.1	chr11	82991038	82991238	-	1	NA	NA	NA	692	NM_172796	237886	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.065000	0.636816	
mm_62.1	chr1	6596937	6597137	+	1	NA	NA	NA	109806	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.313433	
mm_159951.1	chr6	85904825	85905025	-	1	NA	NA	NA	13	NM_029331	75541	Mm.24454	NM_029331	ENSMUSG00000068299	Nat8f4	1700019G17Rik	N-acetyltransferase 8 (GCN5-related) family member 4	protein-coding	0.055000	0.636816	
mm_76595.1	chr8	89044085	89044285	-	1	NA	NA	NA	-23	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.060000	0.587065	
mm_23104.1	chr3	37366788	37366988	+	1	NA	NA	NA	18235	NM_008006	14173	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0.005000	0.472637	-32(CCTTTAATAGTT,+,0.00)
mm_147627.1	chr18	58209041	58209241	-	1	NA	NA	NA	785	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.030000	0.582090	
mm_92447.1	chr10	77697188	77697388	-	1	NA	NA	NA	-6531	NM_001205032	100502831	Mm.486158	NM_001205032	ENSMUSG00000095970	Gm19402	-	predicted gene, 19402	protein-coding	0.010000	0.507463	
mm_21454.1	chr2	160816572	160816772	-	1	NA	NA	NA	56318	NM_177263	320799	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	0.035000	0.383085	
mm_21218.1	chr2	155819133	155819333	-	1	NA	NA	NA	-30	NR_015528	613262	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	0.070000	0.656716	
mm_158918.1	chr1	55363422	55363622	-	1	NA	NA	NA	-53	NM_029267	75388	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	bol, boule-like (Drosophila)	protein-coding	0.180000	0.810945	
mm_98329.1	chr11	90638067	90638267	+	1	NA	NA	NA	-17	NM_199008	69802	Mm.151940	NM_199008	ENSMUSG00000020544	Cox11	2010004I09Rik	cytochrome c oxidase assembly protein 11	protein-coding	0.085000	0.676617	
mm_31985.1	chr4	89152018	89152218	+	1	NA	NA	NA	14748	NM_024433	66902	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	0.010000	0.278607	
mm_145851.1	chr18	65453604	65453804	+	1	NA	NA	NA	22707	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.298507	
mm_159439.1	chr3	123619150	123619350	-	1	NA	NA	NA	200	NM_001293682	83398	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	0.000000	0.378109	
mm_102472.1	chr11	60031758	60031958	-	1	NA	NA	NA	5147	NM_008819	18618	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	0.010000	0.562189	
mm_90959.1	chr10	13303874	13304074	-	1	NA	NA	NA	20186	NM_001195096	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.015000	0.547264	
mm_142239.1	chr17	37482312	37482512	-	1	NA	NA	NA	1117	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.010000	0.472637	
mm_121485.1	chr14	121146705	121146905	+	1	NA	NA	NA	111231	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.010000	0.378109	
mm_114168.1	chr13	55471637	55471837	+	1	NA	NA	NA	6039	NR_105909	102465569		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0.120000	0.766169	
mm_16509.1	chr2	181365299	181365499	+	1	NA	NA	NA	5	NM_001165991	76688	Mm.87720	NM_029702	ENSMUSG00000038671	Arfrp1	1500006I01Rik|AI480700	ADP-ribosylation factor related protein 1	protein-coding	0.120000	0.711443	
mm_6185.1	chr1	65110005	65110205	-	1	NA	NA	NA	-6742	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.055000	0.572139	
mm_65767.1	chr7	28741712	28741912	-	1	NA	NA	NA	-31	NM_011885	24030	Mm.358650	NM_011885	ENSMUSG00000045948	Mrps12	AI327385|Rpms12|rps12	mitochondrial ribosomal protein S12	protein-coding	0.035000	0.542289	
mm_111482.1	chr12	98737433	98737633	-	1	NA	NA	NA	-128	NM_001146199	24000	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0.165000	0.820896	
mm_159505.1	chr4	46344104	46344304	+	1	NA	NA	NA	10	NM_183298	110805	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0.170000	0.776119	
mm_105381.1	chr11	103335216	103335416	-	1	NA	NA	NA	9386	NM_133715	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.030000	0.512438	
mm_50824.1	chr6	54595154	54595354	+	1	NA	NA	NA	143	NM_001164361	231999	Mm.35416	NM_001001335	ENSMUSG00000005225	Plekha8	6330400G01|AA517676|BC052360|Fapp-2|Fapp2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	protein-coding	0.150000	0.796020	
mm_50536.1	chr6	49045902	49046102	+	1	NA	NA	NA	9484	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.000000	0.248756	
mm_86555.1	chr10	10751025	10751225	+	1	NA	NA	NA	79	NR_046010	78056	Mm.271285	NR_046010		4930567K20Rik	1700038H22Rik	RIKEN cDNA 4930567K20 gene	ncRNA	0.000000	0.422886	
mm_60061.1	chr7	31207736	31207936	+	1	NA	NA	NA	45478	NR_046062	100038516	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322|ENSMUSG00000074193	predicted gene 10640	ncRNA	0.020000	0.388060	
mm_42679.1	chr5	119796429	119796629	+	1	NA	NA	NA	-38134	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.050000	0.597015	
mm_46846.1	chr5	113585989	113586189	-	1	NA	NA	NA	35669	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.040000	0.467662	-42(TTCTATAAAAAC,-,0.00)
mm_123617.1	chr14	68120783	68120983	-	1	NA	NA	NA	-2869	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.010000	0.497512	
mm_21301.1	chr2	157058622	157058822	-	1	NA	NA	NA	20543	NM_001164663	320706	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.030000	0.592040	
mm_118817.1	chr14	25481167	25481367	+	1	NA	NA	NA	22082	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.020000	0.462687	
mm_389.1	chr1	34089172	34089372	+	1	NA	NA	NA	-28087	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.005000	0.572139	
mm_130715.1	chr15	101047303	101047503	-	1	NA	NA	NA	6996	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.065000	0.631841	
mm_150618.1	chr19	41029289	41029489	+	1	NA	NA	NA	114	NM_009345	21673	Mm.25620	NM_009345	ENSMUSG00000025014	Dntt	Tdt	deoxynucleotidyltransferase, terminal	protein-coding	0.005000	0.537313	
mm_55235.1	chr6	52245656	52245856	-	1	NA	NA	NA	54	NM_010450	15396	Mm.26954	NM_010450	ENSMUSG00000038210	Hoxa11	Hox-1.9|Hoxa-11	homeobox A11	protein-coding	0.035000	0.487562	
mm_147106.1	chr18	35662088	35662288	-	1	NA	NA	NA	-2	NM_027733	71242	Mm.151498	NM_027733	ENSMUSG00000024352	Spata24	2700012K08Rik|4930583E11Rik|5133400G04Rik|AU016220|TIPT|TIPT2	spermatogenesis associated 24	protein-coding	0.095000	0.691542	
mm_139240.1	chr17	47732966	47733166	+	1	NA	NA	NA	-3971	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.005000	0.542289	
mm_122871.1	chr14	54925521	54925721	-	1	NA	NA	NA	1167	NM_010112	13644	Mm.236438	NM_010112	ENSMUSG00000022203	Efs	-	embryonal Fyn-associated substrate	protein-coding	0.040000	0.592040	
mm_99059.1	chr11	99109483	99109683	+	1	NA	NA	NA	-20277	NM_172564	217169	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	0.010000	0.502488	
mm_21775.1	chr2	164846708	164846908	-	1	NA	NA	NA	10900	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.030000	0.582090	
mm_120787.1	chr14	74732296	74732496	+	1	NA	NA	NA	99	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.070000	0.616915	
mm_41514.1	chr5	92387621	92387821	+	1	NA	NA	NA	-413	NM_181728	109979	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0.025000	0.502488	
mm_122130.1	chr14	31160452	31160652	-	1	NA	NA	NA	8089	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.035000	0.621891	
mm_167228.1	chr8	13138565	13138765	+	1	NA	NA	NA	2593	NR_106032	102465645		NR_106032	ENSMUSG00000098532	Mir7065	Gm27871|mmu-mir-7065	microRNA 7065	ncRNA	0.025000	0.482587	
mm_31127.1	chr4	43058851	43059051	+	1	NA	NA	NA	-2	NM_021468	22249	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	0.105000	0.706468	
mm_142658.1	chr17	47686914	47687114	-	1	NA	NA	NA	-596	NR_045945	100415787	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|OTTMUSG00000018355|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	0.005000	0.477612	
mm_59824.1	chr7	29247553	29247753	+	1	NA	NA	NA	814	NM_028179	72275	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0.025000	0.532338	
mm_47168.1	chr5	120743719	120743919	-	1	NA	NA	NA	6029	NM_145227	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.000000	0.542289	
mm_31805.1	chr4	65339385	65339585	+	1	NA	NA	NA	215311	NM_021362	18491	Mm.317854	NM_021362	ENSMUSG00000028370	Pappa	8430414N03Rik|IGFBP-4ase|PAG1|PAPP-A	pregnancy-associated plasma protein A	protein-coding	0.010000	0.333333	-13(TCTTTTAGAGGG,+,0.00)
mm_136346.1	chr16	92644133	92644333	-	1	NA	NA	NA	53096	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.050000	0.611940	
mm_31247.1	chr4	44943659	44943859	+	1	NA	NA	NA	-37635	NM_080289	76238	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0.005000	0.477612	
mm_1104.1	chr1	59763598	59763798	+	1	NA	NA	NA	-581	NM_007561	12168	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0.130000	0.741294	
mm_110725.1	chr12	69682151	69682351	-	1	NA	NA	NA	-399	NM_001135559	20663	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	son of sevenless homolog 2 (Drosophila)	protein-coding	0.140000	0.736318	
mm_5061.1	chr1	194986566	194986766	+	1	NA	NA	NA	-9707	NR_033564	320400	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.005000	0.318408	
mm_77340.1	chr8	119566421	119566621	-	1	NA	NA	NA	-7760	NM_019709	56453	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	0.035000	0.517413	-9(ATCTCTTTAAGG,-,0.00)
mm_59327.1	chr7	25316883	25317083	+	1	NA	NA	NA	-181	NM_001160400	269878	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	0.065000	0.691542	
mm_43692.1	chr5	139150130	139150330	+	1	NA	NA	NA	7	NM_001081265	433956	Mm.5547	NM_001081265	ENSMUSG00000025857	Dnaaf5	BC053401|C76907|Heatr2	dynein, axonemal assembly factor 5	protein-coding	0.130000	0.686567	
mm_68771.1	chr7	121981613	121981813	-	1	NA	NA	NA	-20	NM_001033318	233824	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0.125000	0.611940	
mm_229.1	chr1	17727286	17727486	+	1	NA	NA	NA	-31	NM_031402	83691	Mm.289625	NM_031402	ENSMUSG00000025776	Crispld1	Cocoacrisp|Lcrisp1	cysteine-rich secretory protein LCCL domain containing 1	protein-coding	0.040000	0.626866	
mm_164403.1	chr16	35154763	35154963	+	1	NA	NA	NA	-773	NM_001012765	224129	Mm.41137	NM_001012765	ENSMUSG00000022840	Adcy5	AW121902|Ac5	adenylate cyclase 5	protein-coding	0.185000	0.840796	
mm_76488.1	chr8	85840489	85840689	-	1	NA	NA	NA	360	NM_028007	71927	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	0.085000	0.681592	
mm_35723.1	chr4	44704343	44704543	-	1	NA	NA	NA	1643	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0.135000	0.756219	
mm_148851.1	chr19	6386319	6386519	+	1	NA	NA	NA	2011	NM_011224	19309	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0.030000	0.582090	
mm_162479.1	chr1	133915281	133915481	-	1	NA	NA	NA	6020	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.025000	0.552239	
mm_143278.1	chr17	65704688	65704888	-	1	NA	NA	NA	-62584	NM_001146002	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.015000	0.447761	-82(TTCTCTAAATGC,-,0.00)
mm_165862.1	chr4	28815498	28815698	+	1	NA	NA	NA	2453	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.105000	0.731343	
mm_102072.1	chr11	52261488	52261688	-	1	NA	NA	NA	21007	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.020000	0.572139	
mm_16609.1	chr2	5083768	5083968	-	1	NA	NA	NA	-19930	NM_181848	71648	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0.015000	0.447761	
mm_125147.1	chr15	30646491	30646691	+	1	NA	NA	NA	-392535	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.065000	0.592040	-94(GCCTTTAAATGT,-,0.00)
mm_142427.1	chr17	45569471	45569671	-	1	NA	NA	NA	3690	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.035000	0.512438	
mm_50565.1	chr6	49047904	49048104	+	1	NA	NA	NA	11486	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.035000	0.552239	
mm_23243.1	chr3	51221138	51221338	+	1	NA	NA	NA	-3209	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.030000	0.477612	
mm_37359.1	chr4	120613776	120613976	-	1	NA	NA	NA	25131	NM_001101603	667063	Mm.90231	NM_001101603	ENSMUSG00000091297	Gm8439	EG667063|Gm1664	predicted gene 8439	protein-coding	0.020000	0.562189	
mm_9443.1	chr1	172590369	172590569	-	1	NA	NA	NA	99	NM_029084	74748	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	0.015000	0.517413	
mm_89675.1	chr10	97517360	97517560	+	1	NA	NA	NA	35129	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.025000	0.432836	
mm_48697.1	chr5	146896949	146897149	-	1	NA	NA	NA	-51608	NM_025652	66596	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0.035000	0.532338	
mm_18829.1	chr2	74705724	74705924	-	1	NA	NA	NA	335	NM_008276	15437	Mm.280673	NM_008276	ENSMUSG00000027102	Hoxd8	4921540P06Rik|AI047735|Hox-4.3|Hox-5.4	homeobox D8	protein-coding	0.165000	0.830846	
mm_134829.1	chr16	26095870	26096070	-	1	NA	NA	NA	9814	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.015000	0.388060	
mm_127618.1	chr15	102460410	102460610	+	1	NA	NA	NA	1340	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.020000	0.611940	
mm_34967.1	chr4	156008601	156008801	+	1	NA	NA	NA	-4994	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.015000	0.517413	
mm_157503.1	chrX	48594477	48594677	-	1	NA	NA	NA	-125	NM_001166649	208968	Mm.293819	NM_153532	ENSMUSG00000036916	Zfp280c	BC028839|Suhw3|Zfp633|Znf280c|mKIAA1584	zinc finger protein 280C	protein-coding	0.060000	0.601990	
mm_77648.1	chr8	124563788	124563988	-	1	NA	NA	NA	5819	NM_007428	11606	Mm.301626	NM_007428	ENSMUSG00000031980	Agt	AI265500|AngI|AngII|Aogen|Serpina8	angiotensinogen (serpin peptidase inhibitor, clade A, member 8)	protein-coding	0.010000	0.517413	
mm_127820.1	chr15	5108429	5108629	-	1	NA	NA	NA	4	NM_001163138	239319	Mm.31252	NM_001163138	ENSMUSG00000041849	Card6	D730008L15	caspase recruitment domain family, member 6	protein-coding	0.020000	0.447761	
mm_148386.1	chr19	3376302	3376502	+	1	NA	NA	NA	-12455	NM_001039658	17771	Mm.209941	NM_010841	ENSMUSG00000024905	Mtl5	tesmin	metallothionein-like 5, testis-specific (tesmin)	protein-coding	0.005000	0.522388	
mm_155797.1	chrX	98938115	98938315	+	1	NA	NA	NA	434	NM_207633	77929	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	0.090000	0.641791	
mm_23429.1	chr3	59005819	59006019	+	1	NA	NA	NA	-1059	NM_177855	329650	Mm.240059	NM_177855	ENSMUSG00000056476	Med12l	A130035F20|A630079M02|AU044581|TRALPUSH	mediator complex subunit 12-like	protein-coding	0.150000	0.711443	
mm_111785.1	chr12	104561684	104561884	-	1	NA	NA	NA	-88548	NM_010351	14836	Mm.129	NM_010351	ENSMUSG00000021095	Gsc	-	goosecoid homeobox	protein-coding	0.025000	0.502488	
mm_40058.1	chr5	33996521	33996721	+	1	NA	NA	NA	637	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.135000	0.726368	
mm_89826.1	chr10	105841329	105841529	+	1	NA	NA	NA	-49	NM_207522	216292	Mm.250875	NM_207522	ENSMUSG00000036009	Mettl25	-	methyltransferase like 25	protein-coding	0.120000	0.661692	
mm_37022.1	chr4	114688624	114688824	-	1	NA	NA	NA	-132996	NR_033617	433746	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	OTTMUSG00000008584	predicted gene 12830	ncRNA	0.030000	0.592040	
mm_11961.1	chr2	53128768	53128968	+	1	NA	NA	NA	62319	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.010000	0.378109	-37(TACTATTAAAAG,-,0.00)
mm_146305.1	chr18	80255259	80255459	+	1	NA	NA	NA	114	NM_001164420	66943	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.015000	0.492537	
mm_34542.1	chr4	149518147	149518347	+	1	NA	NA	NA	6	NM_023465	67087	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0.155000	0.805970	
mm_147545.1	chr18	54699057	54699257	-	1	NA	NA	NA	87413	NR_045400	328957	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	0.045000	0.532338	
mm_63938.1	chr7	139774572	139774772	+	1	NA	NA	NA	-4346	NR_105827	102465215		NR_105827	ENSMUSG00000098619	Mir6401	Gm27442|mmu-mir-6401	microRNA 6401	ncRNA	0.035000	0.527363	
mm_23198.1	chr3	41408656	41408856	+	1	NA	NA	NA	84443	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.040000	0.472637	
mm_115553.1	chr13	8977284	8977484	-	1	NA	NA	NA	18628	NM_027000	69237	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0.015000	0.388060	-59(CTTTTTAAAGAA,+,0.00)
mm_26352.1	chr3	142548747	142548947	+	1	NA	NA	NA	-11205	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.005000	0.288557	
mm_120661.1	chr14	70545165	70545365	+	1	NA	NA	NA	14	NM_180588	72549	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	0.080000	0.641791	-97(CGCTTTAAGAGA,-,0.00),-96(GCTTTAAGAGAC,+,0.00)
mm_133535.1	chr16	91048184	91048384	+	1	NA	NA	NA	-3905	NM_026110	67367	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.020000	0.398010	
mm_126468.1	chr15	81259168	81259368	+	1	NA	NA	NA	-7406	NR_077230	78102	Mm.296832	NR_077229		8430426J06Rik	-	RIKEN cDNA 8430426J06 gene	ncRNA	0.010000	0.487562	-91(GACCATATATGG,-,0.00),-89(CCATATATGGAC,+,0.00)
mm_109460.1	chr12	111166403	111166603	+	1	NA	NA	NA	133	NM_011632	22031	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.170000	0.825871	
mm_142260.1	chr17	39844046	39844246	-	1	NA	NA	NA	1149	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.095000	0.711443	
mm_68664.1	chr7	118855856	118856056	-	1	NA	NA	NA	42	NM_001168218	66356	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0.160000	0.761194	
mm_23729.1	chr3	69026014	69026214	+	1	NA	NA	NA	16212	NR_029735	723949		NR_029735	ENSMUSG00000065606	Mir16-2	Mirn16-2|mir-16-2	microRNA 16-2	ncRNA	0.000000	0.298507	
mm_76103.1	chr8	80395017	80395217	-	1	NA	NA	NA	-98928	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.020000	0.452736	
mm_142657.1	chr17	47670595	47670795	-	1	NA	NA	NA	-16915	NR_045945	100415787	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|OTTMUSG00000018355|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	0.005000	0.472637	
mm_90995.1	chr10	13967388	13967588	-	1	NA	NA	NA	1109	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.065000	0.611940	
mm_21431.1	chr2	158361364	158361564	-	1	NA	NA	NA	45	NR_015463	68108	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	0.060000	0.572139	
mm_149847.1	chr19	25052439	25052639	+	1	NA	NA	NA	53010	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.030000	0.457711	
mm_32848.1	chr4	117974893	117975093	+	1	NA	NA	NA	-45230	NM_001284192	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.010000	0.517413	
mm_18903.1	chr2	76718315	76718515	-	1	NA	NA	NA	43100	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.487562	
mm_138392.1	chr17	35050324	35050524	+	1	NA	NA	NA	181	NM_033444	114584	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.060000	0.601990	
mm_139690.1	chr17	57421597	57421797	+	1	NA	NA	NA	63011	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.507463	
mm_112167.1	chr12	113414302	113414502	-	1	NA	NA	NA	-75163	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.512438	
mm_65516.1	chr7	25755109	25755309	-	1	NA	NA	NA	-489	NM_144922	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.070000	0.572139	
mm_121057.1	chr14	87416533	87416733	+	1	NA	NA	NA	50	NM_001253755	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0.095000	0.582090	
mm_135642.1	chr16	52361787	52361987	-	1	NA	NA	NA	91194	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.333333	
mm_120173.1	chr14	61046552	61046752	+	1	NA	NA	NA	203	NM_013869	29820	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.050000	0.626866	
mm_3750.1	chr1	156035312	156035512	+	1	NA	NA	NA	-252	NM_172843	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.035000	0.472637	
mm_64012.1	chr7	140218172	140218372	+	1	NA	NA	NA	5	NM_172909	244233	Mm.19283	NM_172909	ENSMUSG00000025461	Cd163l1	B430307C05|E430002D04Rik|Scart1	CD163 molecule-like 1	protein-coding	0.005000	0.532338	
mm_151785.1	chr19	5366545	5366745	-	1	NA	NA	NA	-168	NM_027236	69860	Mm.299167	NM_027236	ENSMUSG00000024841	Eif1ad	2010003J03Rik|AI131644	eukaryotic translation initiation factor 1A domain containing	protein-coding	0.110000	0.616915	
mm_40935.1	chr5	76657598	76657798	+	1	NA	NA	NA	65984	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.155000	0.791045	
mm_44918.1	chr5	35728931	35729131	-	1	NA	NA	NA	245	NM_194344	231147	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.025000	0.621891	
mm_29062.1	chr3	103791170	103791370	-	1	NA	NA	NA	5	NM_001301306	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.140000	0.786070	
mm_90251.1	chr10	121626524	121626724	+	1	NA	NA	NA	-308	NM_001081056	73192	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	0.085000	0.626866	38(GCTTTTAGAAGA,+,0.00)
mm_154527.1	chrM	13430	13630	-	1	NA	NA	NA	NA	NA									0.015000	0.303483	
mm_51954.1	chr6	91755907	91756107	+	1	NA	NA	NA	51386	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.025000	0.582090	
mm_33229.1	chr4	126764476	126764676	+	1	NA	NA	NA	10806	NM_001035526	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.015000	0.417910	5(CCTCTTAGAGCT,+,0.00),65(GCTTTTAGACAC,+,0.00)
mm_29189.1	chr3	106547613	106547813	-	1	NA	NA	NA	-85	NM_001286986	67171	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0.080000	0.606965	
mm_16321.1	chr2	174304476	174304676	+	1	NA	NA	NA	6717	NM_001310085	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.000000	0.368159	
mm_53645.1	chr6	140623805	140624005	+	1	NA	NA	NA	403	NM_001005605	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.140000	0.756219	
mm_108267.1	chr12	78748863	78749063	+	1	NA	NA	NA	16	NM_019579	56217	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	0.105000	0.681592	
mm_89470.1	chr10	93488968	93489168	+	1	NA	NA	NA	300	NM_010401	15109	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	0.015000	0.562189	
mm_14907.1	chr2	150567239	150567439	+	1	NA	NA	NA	-3076	NM_009977	13011	Mm.12965	NM_009977	ENSMUSG00000068129	Cst7	Cmap	cystatin F (leukocystatin)	protein-coding	0.005000	0.492537	-44(TCCTATAAAAAG,-,0.00)
mm_125336.1	chr15	38999346	38999546	+	1	NA	NA	NA	-6834	NM_001162494	14368	Mm.4769	NM_008056	ENSMUSG00000022297	Fzd6	Fz6	frizzled class receptor 6	protein-coding	0.010000	0.353234	
mm_115680.1	chr13	13393309	13393509	-	1	NA	NA	NA	215	NM_031999	83924	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	0.100000	0.666667	
mm_87363.1	chr10	43901761	43901961	+	1	NA	NA	NA	54	NM_130892	170728	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	0.095000	0.606965	
mm_122524.1	chr14	47377981	47378181	-	1	NA	NA	NA	4221	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.025000	0.562189	
mm_49191.1	chr6	15185560	15185760	+	1	NA	NA	NA	154	NM_001286607	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.020000	0.427861	39(CTTTTTAGACTG,+,0.00)
mm_16136.1	chr2	170511335	170511535	+	1	NA	NA	NA	205	NM_001199902	109054	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	0.105000	0.706468	
mm_93343.1	chr10	99759569	99759769	-	1	NA	NA	NA	-11	NM_027945	71832	Mm.483162	NM_027945	ENSMUSG00000046934	Csl	1700007H16Rik	citrate synthase like	protein-coding	0.035000	0.462687	
mm_45332.1	chr5	65619669	65619869	-	1	NA	NA	NA	78087	NM_001081321	71521	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0.015000	0.348259	
mm_38962.1	chr4	150854836	150855036	-	1	NA	NA	NA	13	NR_040649	73348	Mm.396218	NR_040649	ENSMUSG00000078492	1700045H11Rik	-	RIKEN cDNA 1700045H11 gene	ncRNA	0.120000	0.661692	-34(GCTTAAAGGGGC,+,0.00)
mm_170110.1	chr17	39844951	39845151	+	1	NA	NA	NA	2054	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.130000	0.746269	
mm_105867.1	chr11	114217504	114217704	-	1	NA	NA	NA	19346	NR_045930	73536	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.035000	0.582090	
mm_20280.1	chr2	126890864	126891064	-	1	NA	NA	NA	11421	NR_106202	102466258		NR_106202	ENSMUSG00000098896	Mir3473g	Gm27751|mmu-mir-3473g	microRNA 3473g	ncRNA	0.020000	0.407960	
mm_142290.1	chr17	40319107	40319307	-	1	NA	NA	NA	0	NM_009638	11571	Mm.16781	NM_009638	ENSMUSG00000025431	Crisp1	AW324342|Aeg1|CRISP-1	cysteine-rich secretory protein 1	protein-coding	0.005000	0.412935	-34(GAGTATAAATAG,-,0.00)
mm_164622.1	chr17	31186538	31186738	-	1	NA	NA	NA	11111	NM_080727	140765	Mm.214638	NM_080727	ENSMUSG00000024034	Tmprss3	-	transmembrane protease, serine 3	protein-coding	0.010000	0.527363	
mm_161616.1	chr16	55282943	55283143	-	1	NA	NA	NA	194	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0.005000	0.328358	
mm_15050.1	chr2	152869448	152869648	+	1	NA	NA	NA	4481	NR_049195	100885834		NR_049195	ENSMUSG00000093746	Mir5622	Gm24421|mmu-mir-5622	microRNA 5622	ncRNA	0.005000	0.452736	
mm_20253.1	chr2	126553167	126553367	-	1	NA	NA	NA	243	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0.075000	0.681592	
mm_140141.1	chr17	79980538	79980738	+	1	NA	NA	NA	81630	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.020000	0.542289	
mm_47690.1	chr5	129669956	129670156	-	1	NA	NA	NA	32	NM_172462	22648	Mm.135067	NM_172462	ENSMUSG00000051034	Zfp11	6720465D24|Krox-6|Zfp-11	zinc finger protein 11	protein-coding	0.105000	0.641791	
mm_61357.1	chr7	68432972	68433172	+	1	NA	NA	NA	15648	NR_046208	71244	Mm.410787	NR_046208	ENSMUSG00000108924	4933436H12Rik	-	RIKEN cDNA 4933436H12 gene	ncRNA	0.005000	0.497512	-86(CTTCATAAAAGG,-,0.00)
mm_72545.1	chr8	84001338	84001538	+	1	NA	NA	NA	-268	NM_183097	73453	Mm.75101	NM_183097	ENSMUSG00000046408	1700067K01Rik	-	RIKEN cDNA 1700067K01 gene	protein-coding	0.135000	0.751244	
mm_43562.1	chr5	137630003	137630203	+	1	NA	NA	NA	980	NR_033148	100316903	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0.000000	0.502488	
mm_130856.1	chr15	102136100	102136300	-	1	NA	NA	NA	15	NM_001033277	223918	Mm.385009	NM_001033277	ENSMUSG00000036966	Spryd3	BC008150	SPRY domain containing 3	protein-coding	0.105000	0.701493	
mm_72573.1	chr8	84147980	84148180	+	1	NA	NA	NA	42	NM_029045	74666	Mm.33625	NM_029045	ENSMUSG00000008129	4930432K21Rik	-	RIKEN cDNA 4930432K21 gene	protein-coding	0.080000	0.636816	
mm_150892.1	chr19	45445401	45445601	+	1	NA	NA	NA	81767	NM_001037758	12234	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.005000	0.417910	-41(GCTTTTAGGGAG,+,0.00)
mm_39980.1	chr5	32459055	32459255	+	1	NA	NA	NA	185	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.115000	0.736318	
mm_110883.1	chr12	75177242	75177442	-	1	NA	NA	NA	-10	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0.075000	0.691542	
mm_100403.1	chr11	119397846	119398046	+	1	NA	NA	NA	7474	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.005000	0.462687	32(AACTCTTAAAGG,-,0.00)
mm_167240.1	chr8	19979919	19980119	+	1	NA	NA	NA	250443	NM_001039553	626415	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	ENSMUSG00000074453|OTTMUSG00000018948|TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	0.075000	0.646766	
mm_23169.1	chr3	40745347	40745547	+	1	NA	NA	NA	-166	NM_011020	18415	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0.165000	0.796020	
mm_24170.1	chr3	88568152	88568352	+	1	NA	NA	NA	-11419	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.020000	0.601990	
mm_34860.1	chr4	155546884	155547084	+	1	NA	NA	NA	-15408	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.000000	0.343284	
mm_88627.1	chr10	79880952	79881152	+	1	NA	NA	NA	1385	NM_011178	19152	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	0.030000	0.542289	
mm_52586.1	chr6	116651781	116651981	+	1	NA	NA	NA	1197	NM_001166580	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.040000	0.646766	
mm_98708.1	chr11	96306954	96307154	+	1	NA	NA	NA	-144	NR_131758	75395	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	0.040000	0.482587	
mm_131900.1	chr16	23256843	23257043	+	1	NA	NA	NA	30922	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.015000	0.587065	
mm_108614.1	chr12	85524559	85524759	+	1	NA	NA	NA	50758	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.010000	0.517413	
mm_110754.1	chr12	70073696	70073896	-	1	NA	NA	NA	29058	NM_001081453	18080	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0.005000	0.402985	
mm_20962.1	chr2	151959275	151959475	-	1	NA	NA	NA	8242	NR_035478	100316704		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	0.015000	0.482587	
mm_114662.1	chr13	78163002	78163202	+	1	NA	NA	NA	33347	NM_001347538	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.030000	0.552239	-25(GGCCAGAAAAAG,-,0.00)
mm_91612.1	chr10	41490275	41490475	-	1	NA	NA	NA	-35	NM_009213	20598	Mm.953	NM_009213	ENSMUSG00000019822	Smpd2	AW108287|nSMase|nSMase1	sphingomyelin phosphodiesterase 2, neutral	protein-coding	0.090000	0.656716	
mm_164187.1	chr15	77840530	77840730	-	1	NA	NA	NA	1545	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.030000	0.492537	
mm_112716.1	chr13	19185001	19185201	+	1	NA	NA	NA	210712	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.487562	
mm_4638.1	chr1	179866573	179866773	+	1	NA	NA	NA	-62658	NM_026375	226747	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.020000	0.527363	
mm_62159.1	chr7	97162562	97162762	+	1	NA	NA	NA	80911	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.000000	0.338308	-43(CTTCTTAAAAGG,-,0.00)
mm_149550.1	chr19	12599882	12600082	+	1	NA	NA	NA	-2	NM_001167907	240549	Mm.302458	NM_001013762	ENSMUSG00000071633	Gm4952	EG240549	predicted gene 4952	protein-coding	0.005000	0.497512	
mm_84369.1	chr9	64918564	64918764	-	1	NA	NA	NA	32943	NM_144813	214111	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	0.060000	0.547264	
mm_41729.1	chr5	102481629	102481829	+	1	NA	NA	NA	338	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.050000	0.646766	
mm_53156.1	chr6	125309606	125309806	+	1	NA	NA	NA	4164	NM_010736	17000	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|CD18|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	0.005000	0.537313	
mm_60698.1	chr7	45175273	45175473	+	1	NA	NA	NA	2070	NR_106022	102465638		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0.020000	0.512438	
mm_24322.1	chr3	89432816	89433016	+	1	NA	NA	NA	1896	NM_001293766	68911	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	0.015000	0.606965	
mm_131878.1	chr16	23224664	23224864	+	1	NA	NA	NA	24	NM_145933	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.040000	0.606965	
mm_65583.1	chr7	27310139	27310339	-	1	NA	NA	NA	23409	NM_001113549	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.020000	0.582090	
mm_126876.1	chr15	89384806	89385006	+	1	NA	NA	NA	-1985	NM_001160178	546648	Mm.478787	NM_001160178	ENSMUSG00000091680	Klhdc7b	EG546648|Gm306	kelch domain containing 7B	protein-coding	0.025000	0.616915	
mm_111113.1	chr12	80960452	80960652	-	1	NA	NA	NA	7527	NM_011387	20493	Mm.486361	NM_011387	ENSMUSG00000021135	Slc10a1	Ntcp	solute carrier family 10 (sodium/bile acid cotransporter family), member 1	protein-coding	0.020000	0.482587	
mm_108319.1	chr12	79722287	79722487	+	1	NA	NA	NA	202346	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.015000	0.417910	
mm_102040.1	chr11	51874899	51875099	-	1	NA	NA	NA	-17518	NM_199299	76901	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.005000	0.542289	
mm_112803.1	chr13	20477405	20477605	+	1	NA	NA	NA	4515	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.010000	0.482587	
mm_61310.1	chr7	67958228	67958428	+	1	NA	NA	NA	6071	NM_010513	16001	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.035000	0.482587	-33(TTCCTTATAAAG,-,0.00),-31(CCTTATAAAGAC,+,0.00)
mm_89657.1	chr10	97482337	97482537	+	1	NA	NA	NA	106	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.025000	0.472637	
mm_66279.1	chr7	37769632	37769832	-	1	NA	NA	NA	20	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.080000	0.557214	
mm_54685.1	chr6	39420205	39420405	-	1	NA	NA	NA	64	NM_018810	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.070000	0.646766	
mm_134963.1	chr16	31429630	31429830	-	1	NA	NA	NA	977	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.070000	0.691542	
mm_143429.1	chr17	70850981	70851181	-	1	NA	NA	NA	129	NM_009372	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.030000	0.557214	
mm_26001.1	chr3	135212524	135212724	+	1	NA	NA	NA	61	NM_173762	229841	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0.090000	0.621891	
mm_78850.1	chr9	44335153	44335353	+	1	NA	NA	NA	538	NM_010436	15270	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	0.070000	0.681592	-12(GCCCTTTTAAGG,-,0.00),-11(CCCTTTTAAGGG,-,0.00),-10(CCTTTTAAGGGC,+,0.00),-9(CTTTTAAGGGCC,+,0.00)
mm_45848.1	chr5	87699348	87699548	-	1	NA	NA	NA	-23	NM_001286021	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.010000	0.368159	
mm_62150.1	chr7	97131117	97131317	+	1	NA	NA	NA	49466	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.010000	0.517413	
mm_43093.1	chr5	124451085	124451285	+	1	NA	NA	NA	4481	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.020000	0.557214	
mm_152339.1	chr19	9982395	9982595	-	1	NA	NA	NA	-151	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.070000	0.636816	
mm_144749.1	chr18	35600903	35601103	+	1	NA	NA	NA	2336	NM_026420	67869	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	0.010000	0.378109	11(TCCTTTAGAGGC,+,0.00)
mm_42584.1	chr5	117319171	117319371	+	1	NA	NA	NA	5	NM_001033311	231668	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	0.115000	0.741294	
mm_147206.1	chr18	37923284	37923484	-	1	NA	NA	NA	12092	NM_001305980	13367	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0.005000	0.318408	
mm_39392.1	chr5	13399658	13399858	+	1	NA	NA	NA	449	NM_009152	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.020000	0.353234	
mm_122200.1	chr14	31781492	31781692	-	1	NA	NA	NA	48823	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.030000	0.477612	
mm_22840.1	chr3	27938522	27938722	+	1	NA	NA	NA	-58	NM_001164056	18805	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.125000	0.736318	
mm_136176.1	chr16	88812134	88812334	-	1	NA	NA	NA	-14	NR_045150	433047	Mm.298027	NR_045150		Gm20741	-	keratin associated protein pseudogene	pseudo	0.000000	0.437811	-86(GACCATAAATAG,-,0.00),-84(CCATAAATAGGA,+,0.00),-35(GAGTATATAAAC,-,0.00)
mm_8631.1	chr1	156303475	156303675	-	1	NA	NA	NA	31	NM_001277730	214575	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	0.125000	0.761194	
mm_143826.1	chr17	84003935	84004135	-	1	NA	NA	NA	5483	NR_130994	78148	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.025000	0.582090	
mm_30105.1	chr3	138526853	138527053	-	1	NA	NA	NA	-315	NM_001313980	13684	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.075000	0.636816	
mm_33060.1	chr4	123201372	123201572	+	1	NA	NA	NA	-81	NM_001085502	230718	Mm.354635	NM_001085502	ENSMUSG00000054958	Nt5c1a	Cn1a|Gm49	5'-nucleotidase, cytosolic IA	protein-coding	0.095000	0.746269	
mm_66521.1	chr7	45124277	45124477	-	1	NA	NA	NA	12	NM_013725	27207	Mm.196538	NM_013725	ENSMUSG00000003429	Rps11	-	ribosomal protein S11	protein-coding	0.115000	0.651741	
mm_133978.1	chr16	4523466	4523666	-	1	NA	NA	NA	-491	NM_001347162	106393	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	0.025000	0.532338	
mm_155921.1	chrX	102119374	102119574	+	1	NA	NA	NA	9	NM_027181	69713	Mm.371635	NM_027181	ENSMUSG00000079480	Pin4	2410002I22Rik|EPVH|Par14	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting, 4 (parvulin)	protein-coding	0.040000	0.542289	
mm_163916.1	chr14	36094865	36095065	+	1	NA	NA	NA	0	NM_175008	218921	Mm.212464	NM_175008	ENSMUSG00000096405	4930474N05Rik	-	RIKEN cDNA 4930474N05 gene	protein-coding	0.000000	0.482587	
mm_124212.1	chr14	99348978	99349178	-	1	NA	NA	NA	50387	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.010000	0.467662	-39(ACATTTAAAAGG,-,0.00)
mm_172291.1	chr6	95800539	95800739	-	1	NA	NA	NA	-81793	NM_011507	20917	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding	0.075000	0.661692	
mm_16537.1	chr2	181601236	181601436	+	1	NA	NA	NA	17	NM_133701	68879	Mm.292001	NM_133701	ENSMUSG00000002455	Prpf6	1190003A07Rik|2610031L17Rik|ANT-1|U5-102K	pre-mRNA splicing factor 6	protein-coding	0.065000	0.577114	
mm_5641.1	chr1	40448284	40448484	-	1	NA	NA	NA	8755	NM_010743	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.000000	0.383085	-89(GTGTTTATAAAC,-,0.00)
mm_39169.1	chr4	155669101	155669301	-	1	NA	NA	NA	53	NM_001256108	76580	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	0.085000	0.686567	
mm_134870.1	chr16	28707229	28707429	-	1	NA	NA	NA	45914	NM_010199	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.000000	0.258706	
mm_118917.1	chr14	26766087	26766287	+	1	NA	NA	NA	-96341	NM_178668	211948	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	0.020000	0.393035	64(TGCCATTAAGGG,-,0.00)
mm_156252.1	chrX	136666333	136666533	+	1	NA	NA	NA	58	NM_001029978	594844	Mm.260515	NM_001029978	ENSMUSG00000044550	Tceal3	1100001D19Rik	transcription elongation factor A (SII)-like 3	protein-coding	0.080000	0.686567	
mm_151566.1	chr19	60756074	60756274	+	1	NA	NA	NA	187	NM_178421	332397	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos homolog 1 (Drosophila)	protein-coding	0.110000	0.746269	
mm_10090.1	chr2	3284076	3284276	+	1	NA	NA	NA	-36	NM_008708	18108	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	0.115000	0.761194	
mm_90098.1	chr10	116964683	116964883	+	1	NA	NA	NA	43	NR_027847	103175	Mm.27138	NR_027846	ENSMUSG00000031294	D630029K05Rik	AI314111|AI875589	RIKEN cDNA D630029K05 gene	ncRNA	0.005000	0.442786	
mm_37825.1	chr4	131937074	131937274	-	1	NA	NA	NA	15403	NM_001201367	623230	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.015000	0.577114	
mm_51207.1	chr6	71329160	71329360	+	1	NA	NA	NA	6448	NM_009858	12526	Mm.333148	NM_009858	ENSMUSG00000053044	Cd8b1	Cd8b|Ly-3|Ly-C|Lyt-3	CD8 antigen, beta chain 1	protein-coding	0.030000	0.527363	
mm_142567.1	chr17	46674211	46674411	-	1	NA	NA	NA	-56	NM_144857	224823	Mm.45101	NM_144857	ENSMUSG00000023971	Rrp36	-	ribosomal RNA processing 36 homolog (S. cerevisiae)	protein-coding	0.070000	0.636816	
mm_5950.1	chr1	56898995	56899195	-	1	NA	NA	NA	72239	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.030000	0.477612	
mm_133523.1	chr16	90831120	90831320	+	1	NA	NA	NA	361	NM_001316761	70967	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	0.125000	0.741294	
mm_104661.1	chr11	97629170	97629370	-	1	NA	NA	NA	446	NM_175332	103551	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0.085000	0.736318	
mm_72536.1	chr8	83996256	83996456	+	1	NA	NA	NA	-1316	NM_001081415	666704	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.030000	0.462687	
mm_161144.1	chr13	22244138	22244338	+	1	NA	NA	NA	23	NM_001080972	626299	Mm.436604	NM_001080972	ENSMUSG00000069297	Vmn1r194	Gm11294|OTTMUSG00000000480	vomeronasal 1 receptor 194	protein-coding	0.000000	0.358209	
mm_129450.1	chr15	78561310	78561510	-	1	NA	NA	NA	11373	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.025000	0.592040	
mm_5354.1	chr1	25615436	25615636	-	1	NA	NA	NA	214171	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.020000	0.358209	
mm_18346.1	chr2	58157015	58157215	-	1	NA	NA	NA	3007	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.010000	0.427861	
mm_86671.1	chr10	18055651	18055851	+	1	NA	NA	NA	-189	NM_009048	19707	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0.155000	0.756219	
mm_104858.1	chr11	99374802	99375002	-	1	NA	NA	NA	1	NM_027574	70843	Mm.180256	NM_027574	ENSMUSG00000055937	Krt28	4733401L19Rik|Krt25d	keratin 28	protein-coding	0.045000	0.527363	-34(GTGTATAAAAGC,-,0.00)
mm_173127.1	chrX	170005178	170005378	-	1	NA	NA	NA	-26361	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.020000	0.661692	
mm_127223.1	chr15	99393524	99393724	+	1	NA	NA	NA	405	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.035000	0.577114	
mm_4650.1	chr1	180333799	180333999	+	1	NA	NA	NA	-3350	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.020000	0.597015	55(CTCCTTAAAAGA,-,0.00)
mm_70394.1	chr8	11036133	11036333	+	1	NA	NA	NA	-27803	NM_001081212	384783	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.025000	0.542289	
mm_66368.1	chr7	43553091	43553291	-	1	NA	NA	NA	-9179	NM_001008549	210104	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0.015000	0.527363	
mm_142958.1	chr17	56120257	56120457	-	1	NA	NA	NA	1589	NM_029796	76905	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0.075000	0.686567	
mm_23985.1	chr3	86104108	86104308	+	1	NA	NA	NA	19774	NM_001082414	27059	Mm.2454	NM_012059	ENSMUSG00000028082	Sh3d19	AW011754|Kryn	SH3 domain protein D19	protein-coding	0.010000	0.477612	-16(CCTTTTAACCGC,+,0.00),68(ATCTTTAAAAAC,-,0.00)
mm_119176.1	chr14	32165663	32165863	+	1	NA	NA	NA	-26	NM_019744	27057	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.100000	0.671642	
mm_105740.1	chr11	109362370	109362570	-	1	NA	NA	NA	-324	NM_010303	14674	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0.060000	0.582090	
mm_107843.1	chr12	69302252	69302452	+	1	NA	NA	NA	5671	NM_027117	69554	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0.035000	0.492537	
mm_15113.1	chr2	153649425	153649625	+	1	NA	NA	NA	76	NM_001271747	13436	Mm.89772	NM_010068	ENSMUSG00000027478	Dnmt3b	MmuIIIB	DNA methyltransferase 3B	protein-coding	0.170000	0.796020	
mm_37719.1	chr4	129555700	129555900	-	1	NA	NA	NA	2011	NR_106199	102465997		NR_106199	ENSMUSG00000099070	Mir8119	Gm27567|mmu-mir-8119	microRNA 8119	ncRNA	0.030000	0.557214	
mm_115283.1	chr13	111807749	111807949	+	1	NA	NA	NA	1134	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.070000	0.626866	
mm_23153.1	chr3	40531050	40531250	+	1	NA	NA	NA	-8238	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.015000	0.442786	
mm_21312.1	chr2	157098508	157098708	-	1	NA	NA	NA	11553	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.025000	0.547264	
mm_103143.1	chr11	70239610	70239810	-	1	NA	NA	NA	142	NM_173742	52898	Mm.29852	NM_173742	ENSMUSG00000040904	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	0.060000	0.636816	
mm_58880.1	chr7	16993908	16994108	+	1	NA	NA	NA	-580	NM_001101535	434130	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	ENSMUSG00000041117	coiled-coil domain containing 8	protein-coding	0.055000	0.616915	-27(GCCTTTAAGCAC,+,0.00)
mm_112029.1	chr12	111485889	111486089	-	1	NA	NA	NA	-166	NM_001033248	212539	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0.080000	0.726368	
mm_75089.1	chr8	33929894	33930094	-	1	NA	NA	NA	-131	NM_001042675	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.120000	0.776119	
mm_63634.1	chr7	128523531	128523731	+	1	NA	NA	NA	48	NM_013863	29810	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0.060000	0.606965	
mm_159442.1	chr3	126943371	126943571	-	1	NA	NA	NA	-85	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.010000	0.447761	
mm_160931.1	chr11	90548810	90549010	-	1	NA	NA	NA	89198	NM_011505	20913	Mm.207203	NM_011505	ENSMUSG00000020546	Stxbp4	6030470M02Rik|Synip	syntaxin binding protein 4	protein-coding	0.040000	0.502488	
mm_171998.1	chr6	104385278	104385478	-	1	NA	NA	NA	-107666	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding	0.070000	0.681592	
mm_29273.1	chr3	107517849	107518049	-	1	NA	NA	NA	69	NM_001293689	229706	Mm.212867	NM_172271	ENSMUSG00000027894	Slc6a17	D130012J15Rik|Ntt4	solute carrier family 6 (neurotransmitter transporter), member 17	protein-coding	0.165000	0.766169	
mm_41692.1	chr5	100643262	100643462	+	1	NA	NA	NA	30894	NM_027978	71883	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0.005000	0.532338	-49(CTGCCTAAAAGC,-,0.00)
mm_228.1	chr1	17726948	17727148	+	1	NA	NA	NA	-369	NM_031402	83691	Mm.289625	NM_031402	ENSMUSG00000025776	Crispld1	Cocoacrisp|Lcrisp1	cysteine-rich secretory protein LCCL domain containing 1	protein-coding	0.005000	0.407960	
mm_84957.1	chr9	83440988	83441188	-	1	NA	NA	NA	11	NM_027448	75782	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	0.085000	0.631841	
mm_50700.1	chr6	52079051	52079251	+	1	NA	NA	NA	-23798	NR_110440	102635415	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|OTTMUSG00000018881|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA	0.025000	0.472637	
mm_26842.1	chr3	14766391	14766591	-	1	NA	NA	NA	11969	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.010000	0.462687	
mm_75827.1	chr8	70488416	70488616	-	1	NA	NA	NA	-1158	NM_182991	67937	Mm.23002	NM_182991	ENSMUSG00000035964	Tmem59l	5330410G16Rik	transmembrane protein 59-like	protein-coding	0.115000	0.746269	
mm_67115.1	chr7	70361419	70361619	-	1	NA	NA	NA	-926	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.065000	0.577114	
mm_152288.1	chr19	8984331	8984531	-	1	NA	NA	NA	-4853	NR_104460	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.000000	0.398010	
mm_125551.1	chr15	58648428	58648628	+	1	NA	NA	NA	174899	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.015000	0.492537	-27(GCTCATATAGCA,+,0.00)
mm_168511.1	chr1	156523904	156524104	+	1	NA	NA	NA	-34783	NM_009595	11352	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0.080000	0.626866	
mm_102369.1	chr11	58452835	58453035	-	1	NA	NA	NA	31	NM_207527	403200	Mm.60809	NM_207527	ENSMUSG00000052642	4930504O13Rik	Gm524|Lypd9	RIKEN cDNA 4930504O13 gene	protein-coding	0.035000	0.547264	
mm_104751.1	chr11	98463523	98463723	-	1	NA	NA	NA	16789	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.020000	0.462687	
mm_154164.1	chr19	58671749	58671949	-	1	NA	NA	NA	1484	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.015000	0.457711	
mm_113174.1	chr13	24813646	24813846	+	1	NA	NA	NA	12089	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.005000	0.303483	
mm_47797.1	chr5	132488433	132488633	-	1	NA	NA	NA	53810	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.005000	0.383085	
mm_36006.1	chr4	56789112	56789312	-	1	NA	NA	NA	-13117	NM_001081420	230234	Mm.268148	NM_001081420	ENSMUSG00000038827	Fam206a	simiate	family with sequence similarity 206, member A	protein-coding	0.000000	0.258706	
mm_40105.1	chr5	34660286	34660486	+	1	NA	NA	NA	7	NM_019497	14772	Mm.117076	NM_019497	ENSMUSG00000052783	Grk4	A830025H08Rik|GRK|Gprk2l|Gprk4	G protein-coupled receptor kinase 4	protein-coding	0.095000	0.646766	
mm_23208.1	chr3	41563274	41563474	+	1	NA	NA	NA	-9	NM_172303	269424	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.105000	0.721393	
mm_104466.1	chr11	95225438	95225638	-	1	NA	NA	NA	-35991	NM_053093	93670	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0.025000	0.567164	
mm_76341.1	chr8	84721703	84721903	-	1	NA	NA	NA	20346	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.045000	0.606965	
mm_47290.1	chr5	122234556	122234756	-	1	NA	NA	NA	24369	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.005000	0.477612	
mm_99092.1	chr11	99857817	99858017	+	1	NA	NA	NA	0	NM_001205030	432600	Mm.60039	NM_001205030	ENSMUSG00000069717	Gm11568	OTTMUSG00000002207	predicted gene 11568	protein-coding	0.005000	0.457711	-33(ATATATAAAAGG,-,0.00)
mm_19350.1	chr2	90917755	90917955	-	1	NA	NA	NA	195	NM_025576	66461	Mm.23926	NM_025576		Ptpmt1	1110001D10Rik|2810004N20Rik|PLIP	protein tyrosine phosphatase, mitochondrial 1	protein-coding	0.125000	0.771144	
mm_51913.1	chr6	91233385	91233585	+	1	NA	NA	NA	20721	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.030000	0.597015	
mm_77372.1	chr8	119828157	119828357	-	1	NA	NA	NA	12322	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.005000	0.552239	
mm_161284.1	chr14	25651822	25652022	+	1	NA	NA	NA	-42248	NM_134084	105675	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.060000	0.611940	
mm_6222.1	chr1	66863246	66863446	-	1	NA	NA	NA	-37	NM_007381	11363	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.150000	0.815920	
mm_48144.1	chr5	137150460	137150660	-	1	NA	NA	NA	-34353	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.477612	
mm_128173.1	chr15	34443090	34443290	-	1	NA	NA	NA	35	NM_009083	19946	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	0.060000	0.572139	
mm_7533.1	chr1	124414521	124414721	-	1	NA	NA	NA	-369062	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.398010	
mm_89059.1	chr10	82887562	82887762	+	1	NA	NA	NA	21036	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.010000	0.507463	
mm_114058.1	chr13	54371354	54371554	+	1	NA	NA	NA	105	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.080000	0.681592	
mm_165998.1	chr4	115004647	115004847	+	1	NA	NA	NA	4629	NM_001304555	20460	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	0.000000	0.318408	
mm_46044.1	chr5	92042566	92042766	-	1	NA	NA	NA	30	NM_001276315	53886	Mm.44963	NM_016912	ENSMUSG00000029403	Cdkl2	5330436L21Rik|AI505225|KKIAMRE|Kkm	cyclin-dependent kinase-like 2 (CDC2-related kinase)	protein-coding	0.080000	0.661692	
mm_93860.1	chr10	122857320	122857520	-	1	NA	NA	NA	128304	NR_029527	387251		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.045000	0.567164	
mm_26135.1	chr3	137910577	137910777	+	1	NA	NA	NA	-7878	NM_019920	56692	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0.030000	0.502488	
mm_7598.1	chr1	125913011	125913211	-	1	NA	NA	NA	-183	NM_001311089	72585	Mm.490405	NM_145100	ENSMUSG00000026344	Lypd1	2700050C12Rik|AI853408|C530008O16Rik|Lynx2|Lypdc1	Ly6/Plaur domain containing 1	protein-coding	0.035000	0.572139	
mm_144343.1	chr18	15150182	15150382	+	1	NA	NA	NA	1164	NM_134112	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.055000	0.606965	49(CCCTTTAAGAGA,-,0.00),50(CCTTTAAGAGAA,+,0.00)
mm_119649.1	chr14	52014839	52015039	+	1	NA	NA	NA	-381	NM_001253695	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.035000	0.601990	
mm_131025.1	chr16	3563729	3563929	+	1	NA	NA	NA	-28569	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.000000	0.422886	
mm_125150.1	chr15	30646654	30646854	+	1	NA	NA	NA	-392372	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.135000	0.756219	
mm_163106.1	chr11	69921302	69921502	-	1	NA	NA	NA	-16	NM_181582	276770	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.075000	0.651741	
mm_136880.1	chr17	13008091	13008291	+	1	NA	NA	NA	352	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.105000	0.711443	
mm_95924.1	chr11	58286370	58286570	+	1	NA	NA	NA	-20599	NM_182996	103836	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	0.010000	0.512438	
mm_133070.1	chr16	58670431	58670631	+	1	NA	NA	NA	323	NM_007757	12892	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0.125000	0.786070	
mm_54636.1	chr6	38745653	38745853	-	1	NA	NA	NA	82684	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.020000	0.487562	
mm_39249.1	chr5	3497759	3497959	+	1	NA	NA	NA	-45974	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.020000	0.487562	
mm_31842.1	chr4	74251785	74251985	+	1	NA	NA	NA	6	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.140000	0.761194	
mm_146652.1	chr18	11051391	11051591	-	1	NA	NA	NA	-1019	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.035000	0.527363	
mm_141829.1	chr17	34627914	34628114	-	1	NA	NA	NA	2	NM_001302394	54397	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	0.055000	0.592040	-74(GCCCATATAAGG,-,0.00),-72(CCATATAAGGTG,+,0.00)
mm_131360.1	chr16	13757938	13758138	+	1	NA	NA	NA	-22661	NM_001039521	106298	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	0.010000	0.368159	
mm_57392.1	chr6	124840085	124840285	-	1	NA	NA	NA	90	NM_013530	14695	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0.020000	0.626866	
mm_46073.1	chr5	92323600	92323800	-	1	NA	NA	NA	4379	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.000000	0.328358	-18(CCTTTAATACAT,+,0.00)
mm_76745.1	chr8	95332051	95332251	-	1	NA	NA	NA	-133	NM_133954	101985	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	0.080000	0.656716	
mm_24701.1	chr3	95126123	95126323	+	1	NA	NA	NA	1709	NM_016712	50874	Mm.71935	NM_016712	ENSMUSG00000005628	Tmod4	MTMOD|Sk-Tmod	tropomodulin 4	protein-coding	0.005000	0.497512	
mm_6236.1	chr1	66945226	66945426	-	1	NA	NA	NA	-270	NM_021285	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.010000	0.407960	
mm_98520.1	chr11	94953021	94953221	+	1	NA	NA	NA	-14472	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.005000	0.532338	
mm_99291.1	chr11	101330684	101330884	+	1	NA	NA	NA	178	NM_009675	11754	Mm.67281	NM_009675	ENSMUSG00000019326	Aoc3	SSAO|VAP1	amine oxidase, copper containing 3	protein-coding	0.015000	0.572139	
mm_73655.1	chr8	110957640	110957840	+	1	NA	NA	NA	37875	NM_009179	20444	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	0.055000	0.631841	
mm_148128.1	chr18	75666101	75666301	-	1	NA	NA	NA	31495	NM_201354	269037	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0.020000	0.512438	
mm_4470.1	chr1	173419174	173419374	+	1	NA	NA	NA	-1330	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.000000	0.422886	
mm_135846.1	chr16	58718778	58718978	-	1	NA	NA	NA	-154	NM_001162955	71223	Mm.359970	NM_001162955	ENSMUSG00000047293	Gpr15	4933439K08Rik	G protein-coupled receptor 15	protein-coding	0.015000	0.462687	
mm_98417.1	chr11	94565329	94565529	+	1	NA	NA	NA	355	NM_007689	12643	Mm.440523	NM_007689	ENSMUSG00000039084	Chad	SLRR4A	chondroadherin	protein-coding	0.055000	0.577114	
mm_170968.1	chr2	60050545	60050745	-	1	NA	NA	NA	75095	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.020000	0.472637	
mm_7104.1	chr1	89281200	89281400	-	1	NA	NA	NA	124833	NR_040482	77331	Mm.374962	NR_040482	ENSMUSG00000099938	C030007H22Rik	-	RIKEN cDNA C030007H22 gene	ncRNA	0.005000	0.457711	
mm_43338.1	chr5	135064137	135064337	+	1	NA	NA	NA	31	NM_025362	66114	Mm.178012	NM_025362	ENSMUSG00000061118	Dnajc30	1300007M11Rik|Wbscr18	DnaJ heat shock protein family (Hsp40) member C30	protein-coding	0.085000	0.666667	
mm_113395.1	chr13	33083967	33084167	+	1	NA	NA	NA	-36	NM_173052	282663	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	0.005000	0.497512	
mm_145395.1	chr18	57142661	57142861	+	1	NA	NA	NA	9671	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.005000	0.472637	
mm_133452.1	chr16	88819949	88820149	+	1	NA	NA	NA	6096	NM_013707	23927	Mm.3502	NM_013707	ENSMUSG00000074928	Krtap14	AA589630|Pmg1|mKAP13	keratin associated protein 14	protein-coding	0.005000	0.447761	-35(GAGTATATAAGC,-,0.00)
mm_48318.1	chr5	138977001	138977201	-	1	NA	NA	NA	17852	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.045000	0.492537	
mm_90224.1	chr10	121034157	121034357	+	1	NA	NA	NA	253	NM_011915	24117	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0.050000	0.611940	
mm_138932.1	chr17	43801869	43802069	+	1	NA	NA	NA	118	NM_207649	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.125000	0.771144	
mm_52187.1	chr6	99655571	99655771	+	1	NA	NA	NA	11100	NM_025829	66892	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.025000	0.512438	
mm_43845.1	chr5	143180919	143181119	+	1	NA	NA	NA	2	NM_177880	330228	Mm.255752	NM_177880	ENSMUSG00000029586	Spdye4b	4933411G11Rik	speedy/RINGO cell cycle regulator family, member E4B	protein-coding	0.010000	0.507463	
mm_22053.1	chr2	168513092	168513292	-	1	NA	NA	NA	77173	NM_001291178	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.000000	0.388060	
mm_160577.1	chr9	58582236	58582436	+	1	NA	NA	NA	96	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.135000	0.766169	
mm_79175.1	chr9	47853012	47853212	+	1	NA	NA	NA	-34904	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.010000	0.323383	-1(TTTTTTAAAGGA,+,0.00)
mm_50034.1	chr6	41135048	41135248	+	1	NA	NA	NA	-99639	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.482587	
mm_77617.1	chr8	123925802	123926002	-	1	NA	NA	NA	23363	NM_172288	234865	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	0.015000	0.527363	
mm_166184.1	chr5	32138795	32138995	-	1	NA	NA	NA	2423	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.015000	0.522388	
mm_167057.1	chr7	90029042	90029242	+	1	NA	NA	NA	-17	NR_110365	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	0.010000	0.407960	-16(GACCTTTAAAAG,-,0.00),-15(ACCTTTAAAAGG,-,0.00),-14(CCTTTAAAAGGA,+,0.00)
mm_170960.1	chr2	56766070	56766270	+	1	NA	NA	NA	-19641	NR_105751	102465169		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA	0.050000	0.567164	
mm_144507.1	chr18	24653770	24653970	+	1	NA	NA	NA	179	NM_026779	68591	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	0.100000	0.721393	
mm_118751.1	chr14	22365040	22365240	+	1	NA	NA	NA	177658	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.015000	0.452736	
mm_91774.1	chr10	51786854	51787054	-	1	NA	NA	NA	-29760	NR_045158	71090	Mm.72588	NM_027670	ENSMUSG00000062224	4933411G06Rik	-	Sumo1 pseudogene	pseudo	0.005000	0.507463	
mm_4286.1	chr1	171681985	171682185	+	1	NA	NA	NA	30	NM_007649	12506	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	0.015000	0.487562	
mm_18343.1	chr2	58156912	58157112	-	1	NA	NA	NA	3110	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.000000	0.378109	
mm_108253.1	chr12	78230400	78230600	+	1	NA	NA	NA	3845	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.000000	0.238806	
mm_24200.1	chr3	88616042	88616242	+	1	NA	NA	NA	-65	NM_001198911	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.015000	0.507463	-67(GGCCCTTTAAGA,-,0.00),-64(CCTTTAAGAACC,+,0.00)
mm_103048.1	chr11	69805365	69805565	-	1	NA	NA	NA	159	NM_001033433	380705	Mm.490673	NM_001033433	ENSMUSG00000089876	Tmem102	4632403M07Rik|Cbap|Tmem102-ps	transmembrane protein 102	protein-coding	0.020000	0.427861	
mm_164269.1	chr15	101248177	101248377	+	1	NA	NA	NA	-18569	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.010000	0.552239	
mm_79426.1	chr9	55430316	55430516	+	1	NA	NA	NA	81827	NM_145615	110842	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	0.060000	0.656716	
mm_27067.1	chr3	27896252	27896452	-	1	NA	NA	NA	16	NM_001164437	208613	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	0.005000	0.527363	-66(GTTTATAGAGGC,+,0.00)
mm_58981.1	chr7	19076105	19076305	+	1	NA	NA	NA	5	NM_010058	13401	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0.120000	0.756219	
mm_72221.1	chr8	72720481	72720681	+	1	NA	NA	NA	-2689	NM_001113248	20467	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0.005000	0.402985	
mm_152465.1	chr19	10948423	10948623	-	1	NA	NA	NA	743	NM_023731	108673	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0.050000	0.671642	
mm_132128.1	chr16	31754711	31754911	+	1	NA	NA	NA	461	NM_001252436	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.030000	0.512438	
mm_124020.1	chr14	76520756	76520956	-	1	NA	NA	NA	-1	NR_045660	75789	Mm.159571	NR_045660	ENSMUSG00000097172	4930444M15Rik	-	RIKEN cDNA 4930444M15 gene	ncRNA	0.015000	0.477612	
mm_34435.1	chr4	147361191	147361391	+	1	NA	NA	NA	185425	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.030000	0.527363	
mm_22952.1	chr3	32396957	32397157	+	1	NA	NA	NA	-31392	NM_009517	22401	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0.065000	0.621891	
mm_131583.1	chr16	18428891	18429091	+	1	NA	NA	NA	-2275	NM_001111062	12846	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.010000	0.537313	
mm_92976.1	chr10	86591408	86591608	-	1	NA	NA	NA	-92612	NM_013722	27204	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	0.000000	0.497512	
mm_75027.1	chr8	31918757	31918957	-	1	NA	NA	NA	-654	NM_178591	211323	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding	0.040000	0.597015	
mm_142455.1	chr17	45593578	45593778	-	1	NA	NA	NA	-38	NM_001199113	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.025000	0.606965	
mm_43838.1	chr5	142972757	142972957	+	1	NA	NA	NA	12502	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.015000	0.547264	
mm_82841.1	chr9	31167584	31167784	-	1	NA	NA	NA	-35885	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.045000	0.552239	44(CTTTATATATGG,+,0.00)
mm_171459.1	chr4	145640854	145641054	+	1	NA	NA	NA	-29743	NM_001103158	100041379	Mm.276881	NM_001103158	ENSMUSG00000058186	Zfp980	Gm13242|OTTMUSG00000011070	zinc finger protein 980	protein-coding	0.120000	0.726368	
mm_6947.1	chr1	85736475	85736675	-	1	NA	NA	NA	31	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.040000	0.542289	
mm_87113.1	chr10	33233802	33234002	+	1	NA	NA	NA	22455	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.005000	0.368159	
mm_136522.1	chr16	97459420	97459620	-	1	NA	NA	NA	3385	NM_010846	17857	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.005000	0.398010	-75(CTCCATTAATGG,-,0.00),-73(CCATTAATGGCC,+,0.00)
mm_91785.1	chr10	52419401	52419601	-	1	NA	NA	NA	1954	NM_030250	52014	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.020000	0.437811	
mm_94948.1	chr11	29731404	29731604	+	1	NA	NA	NA	12941	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.005000	0.427861	
mm_105995.1	chr11	115645127	115645327	-	1	NA	NA	NA	-16932	NM_001252395	67283	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.020000	0.547264	
mm_69420.1	chr7	132720611	132720811	-	1	NA	NA	NA	56205	NM_001347630	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.030000	0.601990	-35(GGGCTTATAAGC,-,0.00)
mm_51829.1	chr6	89413813	89414013	+	1	NA	NA	NA	-51300	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.000000	0.467662	
mm_69213.1	chr7	127512217	127512417	-	1	NA	NA	NA	334	NM_001304266	100043597	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	0.080000	0.681592	
mm_128368.1	chr15	42571096	42571296	-	1	NA	NA	NA	105781	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.000000	0.298507	
mm_146119.1	chr18	74442258	74442458	+	1	NA	NA	NA	-261	NM_201600	17919	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	0.175000	0.850746	40(GGGCTTAAAGGC,-,0.00)
mm_138133.1	chr17	34187749	34187949	+	1	NA	NA	NA	293	NM_013683	21354	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.100000	0.686567	
mm_68488.1	chr7	111073983	111074183	-	1	NA	NA	NA	8947	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.005000	0.462687	-60(TCTTTTAAGCCA,+,0.00),83(GCCTAAATAGCA,+,0.00)
mm_94364.1	chr11	5012495	5012695	+	1	NA	NA	NA	25771	NM_007454	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.005000	0.512438	
mm_144431.1	chr18	21001724	21001924	+	1	NA	NA	NA	-133	NM_001303011	56515	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	0.115000	0.681592	
mm_77654.1	chr8	124568771	124568971	-	1	NA	NA	NA	836	NM_007428	11606	Mm.301626	NM_007428	ENSMUSG00000031980	Agt	AI265500|AngI|AngII|Aogen|Serpina8	angiotensinogen (serpin peptidase inhibitor, clade A, member 8)	protein-coding	0.005000	0.427861	
mm_137363.1	chr17	25370458	25370658	+	1	NA	NA	NA	5	NM_012034	26945	Mm.180108	NM_012034	ENSMUSG00000033200	Tpsg1	Prss31|Tmt	tryptase gamma 1	protein-coding	0.000000	0.587065	
mm_65687.1	chr7	28372256	28372456	-	1	NA	NA	NA	306	NM_138752	101497	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.070000	0.696517	
mm_30472.1	chr3	154596967	154597167	-	1	NA	NA	NA	31	NM_001168358	209584	Mm.347513	NM_172474	ENSMUSG00000047583	Tyw3	5230400J09Rik	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	protein-coding	0.100000	0.646766	
mm_30431.1	chr3	153225658	153225858	-	1	NA	NA	NA	72891	NR_126464	75489	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0.015000	0.417910	
mm_33174.1	chr4	126046932	126047132	+	1	NA	NA	NA	104	NM_025544	66407	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	0.120000	0.701493	
mm_28409.1	chr3	90266295	90266495	-	1	NA	NA	NA	-119	NM_201407	229541	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0.025000	0.552239	
mm_56556.1	chr6	101198940	101199140	-	1	NA	NA	NA	178857	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.035000	0.572139	
mm_81928.1	chr9	120179571	120179771	+	1	NA	NA	NA	29929	NM_001039364	17433	Mm.486167	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.020000	0.432836	
mm_42680.1	chr5	119796452	119796652	+	1	NA	NA	NA	-38111	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.050000	0.592040	
mm_19674.1	chr2	103454312	103454512	-	1	NA	NA	NA	30344	NM_010125	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.005000	0.343284	
mm_52610.1	chr6	117173629	117173829	+	1	NA	NA	NA	5194	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.035000	0.557214	82(GCTTTTATAACT,+,0.00)
mm_160558.1	chr9	51105767	51105967	+	1	NA	NA	NA	-2222	NR_029655	723849		NR_029655	ENSMUSG00000065492	Mir34b	Mirn34b|mir-34b|mmu-mir-34b	microRNA 34b	ncRNA	0.005000	0.388060	
mm_131813.1	chr16	22920155	22920355	+	1	NA	NA	NA	33	NM_001083904	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.025000	0.502488	
mm_113469.1	chr13	36359695	36359895	+	1	NA	NA	NA	242152	NM_001039189	69955	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.000000	0.263682	
mm_157917.1	chrX	78554168	78554368	-	1	NA	NA	NA	29537	NM_001164275	546336	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	0.005000	0.358209	
mm_124622.1	chr15	3280296	3280496	+	1	NA	NA	NA	9419	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.015000	0.363184	18(TCTTTTATGGCT,+,0.00)
mm_125408.1	chr15	41751418	41751618	+	1	NA	NA	NA	-37516	NM_001130165	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.020000	0.547264	
mm_39517.1	chr5	21256894	21257094	+	1	NA	NA	NA	70727	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.005000	0.283582	
mm_171159.1	chr3	22731544	22731744	-	1	NA	NA	NA	480274	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0.065000	0.631841	
mm_154471.1	chrM	3704	3904	-	1	NA	NA	NA	NA	NA									0.020000	0.348259	
mm_115266.1	chr13	110864856	110865056	+	1	NA	NA	NA	-38543	NR_131193	75139	Mm.490931	NR_131193		Gm38397	-	predicted gene, 38397	ncRNA	0.010000	0.442786	
mm_115957.1	chr13	23761130	23761330	-	1	NA	NA	NA	19	NM_178192	326619	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	0.075000	0.552239	17(AGCTATATAAAG,-,0.00)
mm_89601.1	chr10	95989466	95989666	+	1	NA	NA	NA	48903	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.015000	0.388060	-14(CGTTTTATAGGG,+,0.00),43(GCTTTTCAAGCA,+,0.00)
mm_164017.1	chr14	71420893	71421093	+	1	NA	NA	NA	169720	NR_046076	100043132	Mm.399336	NR_046075		Gm4251	-	predicted gene 4251	ncRNA	0.005000	0.457711	
mm_36561.1	chr4	87226673	87226873	-	1	NA	NA	NA	1190	NM_001110240	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	0.000000	0.308458	
mm_162934.1	chr10	127288831	127289031	+	1	NA	NA	NA	87	NM_001347171	110962	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.180000	0.820896	
mm_77598.1	chr8	123892508	123892708	-	1	NA	NA	NA	2167	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.070000	0.597015	
mm_74964.1	chr8	26824324	26824524	-	1	NA	NA	NA	-1	NR_045904	72316	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.005000	0.487562	
mm_130113.1	chr15	89476289	89476489	-	1	NA	NA	NA	137	NR_077233	100532730	Mm.461541	NR_077233		C230037L18Rik	-	RIKEN cDNA C230037L18 gene	ncRNA	0.065000	0.626866	
mm_104910.1	chr11	99665577	99665777	-	1	NA	NA	NA	283	NM_026834	68768	Mm.416844	NM_026834	ENSMUSG00000075566	Krtap4-6	1110054P19Rik	keratin associated protein 4-6	protein-coding	0.020000	0.681592	
mm_166095.1	chr4	141623041	141623241	-	1	NA	NA	NA	693	NM_001013780	384071	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	0.020000	0.557214	
mm_9024.1	chr1	166380018	166380218	-	1	NA	NA	NA	951	NM_030245	27878	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0.045000	0.587065	-23(GCTTATAGAGCT,+,0.00),54(CCCCTGAAAAGC,-,0.00)
mm_90776.1	chr10	5922296	5922496	-	1	NA	NA	NA	4	NM_001161822	56533	Mm.44606	NM_019958	ENSMUSG00000019775	Rgs17	6430507P11Rik|Rgsz2	regulator of G-protein signaling 17	protein-coding	0.090000	0.716418	
mm_88296.1	chr10	75316631	75316831	+	1	NA	NA	NA	-146	NM_009630	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.030000	0.587065	
mm_137761.1	chr17	29489586	29489786	+	1	NA	NA	NA	-1359	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.045000	0.547264	
mm_86366.1	chr9	123792371	123792571	-	1	NA	NA	NA	-14006	NM_030712	80901	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.010000	0.482587	
mm_43726.1	chr5	139547850	139548050	+	1	NA	NA	NA	4052	NM_013702	22255	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	0.030000	0.482587	-93(GCTCTTAGAGAC,+,0.00),-38(ATTTTTAAAGGC,+,0.00)
mm_127057.1	chr15	97245582	97245782	+	1	NA	NA	NA	-1425	NM_172293	239647	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	0.035000	0.527363	
mm_157953.1	chrX	87268754	87268954	-	1	NA	NA	NA	846769	NM_001160403	331461	Mm.121680	NM_001160403	ENSMUSG00000052372	Il1rapl1	6330532G10Rik|C030039N24|IL1R8|IL1RAPL|MRX34|OPHN4|TIGIRR-2	interleukin 1 receptor accessory protein-like 1	protein-coding	0.000000	0.208955	
mm_86180.1	chr9	119190297	119190497	-	1	NA	NA	NA	-4	NM_001037749	382113	Mm.335525	NM_001037749	ENSMUSG00000070280	Slc22a14	Gm1128	solute carrier family 22 (organic cation transporter), member 14	protein-coding	0.010000	0.527363	
mm_43540.1	chr5	137350325	137350525	+	1	NA	NA	NA	316	NM_010144	13846	Mm.34533	NM_010144	ENSMUSG00000029710	Ephb4	AI042935|Htk|MDK2|Myk1|Tyro11	Eph receptor B4	protein-coding	0.135000	0.756219	
mm_35465.1	chr4	40781750	40781950	-	1	NA	NA	NA	-23965	NM_021535	74255	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.020000	0.497512	
mm_87602.1	chr10	57650881	57651081	+	1	NA	NA	NA	0	NM_001039050	18768	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.005000	0.467662	
mm_123082.1	chr14	55745394	55745594	-	1	NA	NA	NA	190	NM_026819	52585	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.050000	0.537313	
mm_37174.1	chr4	117192011	117192211	-	1	NA	NA	NA	-9487	NM_134471	73804	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.035000	0.532338	
mm_120750.1	chr14	73239080	73239280	+	1	NA	NA	NA	1289	NM_175116	67168	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.010000	0.373134	
mm_102484.1	chr11	60210319	60210519	-	1	NA	NA	NA	-8092	NR_105887	102465556		NR_105887	ENSMUSG00000099259	Mir6922	Gm27269|mmu-mir-6922	microRNA 6922	ncRNA	0.115000	0.686567	-34(GGGCTTTAAAGC,-,0.00)
mm_84922.1	chr9	80344678	80344878	-	1	NA	NA	NA	120660	NM_022016	63859	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	0.010000	0.348259	
mm_20428.1	chr2	129305794	129305994	-	1	NA	NA	NA	4078	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.005000	0.402985	
mm_37398.1	chr4	121109115	121109315	-	1	NA	NA	NA	11	NM_001081312	69469	Mm.481120	NM_001081312	ENSMUSG00000078577	Tmco2	1700028F16Rik	transmembrane and coiled-coil domains 2	protein-coding	0.010000	0.462687	
mm_15212.1	chr2	154215164	154215364	+	1	NA	NA	NA	-8478	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.010000	0.467662	-58(CCCTTTAGATGC,+,0.00)
mm_157104.1	chrX	9437608	9437808	-	1	NA	NA	NA	31616	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.368159	-15(CTTTTTAAATAG,+,0.00)
mm_91913.1	chr10	60294893	60295093	-	1	NA	NA	NA	10532	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.030000	0.547264	
mm_18550.1	chr2	65089089	65089289	-	1	NA	NA	NA	-66423	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0.000000	0.328358	
mm_151975.1	chr19	5826735	5826935	-	1	NA	NA	NA	18643	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.015000	0.432836	
mm_115932.1	chr13	23585876	23586076	-	1	NA	NA	NA	-6	NM_001290530	319179	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0.025000	0.472637	
mm_46053.1	chr5	92137648	92137848	-	1	NA	NA	NA	-190	NM_019490	56041	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0.070000	0.716418	
mm_121733.1	chr14	18270970	18271170	-	1	NA	NA	NA	-66	NM_001316712	69721	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	0.050000	0.631841	
mm_93338.1	chr10	99759408	99759608	-	1	NA	NA	NA	150	NM_027945	71832	Mm.483162	NM_027945	ENSMUSG00000046934	Csl	1700007H16Rik	citrate synthase like	protein-coding	0.035000	0.457711	
mm_69370.1	chr7	130720685	130720885	-	1	NA	NA	NA	28229	NM_021314	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.025000	0.611940	
mm_37908.1	chr4	132757006	132757206	-	1	NA	NA	NA	65	NM_133888	100340	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	0.065000	0.631841	
mm_163354.1	chr12	24890817	24891017	+	1	NA	NA	NA	59318	NM_001083341	67216	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	0.005000	0.562189	
mm_76996.1	chr8	107096291	107096491	-	1	NA	NA	NA	154	NM_001286200	21750	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	0.160000	0.766169	
mm_160358.1	chr8	21655656	21655856	+	1	NA	NA	NA	-11	NM_001167790	23855	Mm.425519	NM_001167790	ENSMUSG00000060208	Defa17	AU014719|Cryp17|Defcr17	defensin, alpha, 17	protein-coding	0.005000	0.537313	-32(TCCTATAAATGC,-,0.00)
mm_139188.1	chr17	47597010	47597210	+	1	NA	NA	NA	3643	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.025000	0.522388	
mm_75798.1	chr8	70120724	70120924	-	1	NA	NA	NA	20	NM_007789	13004	Mm.268079	NM_007789	ENSMUSG00000002341	Ncan	C230035B04|Cspg3|Cspg3-rs|Tgfbit	neurocan	protein-coding	0.070000	0.636816	-34(TCCTTTATAAGT,-,0.00)
mm_30626.1	chr4	8735855	8736055	+	1	NA	NA	NA	45549	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.010000	0.462687	
mm_78529.1	chr9	34797704	34797904	+	1	NA	NA	NA	309073	NM_001190911	67703	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kin of IRRE like 3 (Drosophila)	protein-coding	0.005000	0.407960	
mm_169587.1	chr15	25769827	25770027	-	1	NA	NA	NA	-73371	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.010000	0.502488	
mm_48070.1	chr5	136581632	136581832	-	1	NA	NA	NA	-14242	NM_001291238	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.030000	0.502488	
mm_64149.1	chr7	141291911	141292111	+	1	NA	NA	NA	5	NM_007878	13491	Mm.41075	NM_007878	ENSMUSG00000025496	Drd4	AW125663|D4R|Drd-4	dopamine receptor D4	protein-coding	0.075000	0.691542	
mm_13424.1	chr2	104590393	104590593	+	1	NA	NA	NA	9	NM_001037326	228410	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	0.085000	0.636816	
mm_160775.1	chr10	123127577	123127777	-	1	NA	NA	NA	-51172	NM_001163025	67074	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	0.015000	0.368159	
mm_27691.1	chr3	66136341	66136541	-	1	NA	NA	NA	-83446	NM_008987	19288	Mm.276776	NM_008987	ENSMUSG00000027832	Ptx3	AI607804|TSG-14	pentraxin related gene	protein-coding	0.015000	0.527363	
mm_138357.1	chr17	34981869	34982069	+	1	NA	NA	NA	115	NM_001204274	27756	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.135000	0.721393	
mm_14425.1	chr2	130504194	130504394	+	1	NA	NA	NA	54016	NM_001163688	19262	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	0.035000	0.542289	
mm_103896.1	chr11	83575221	83575421	-	1	NA	NA	NA	3315	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.005000	0.398010	
mm_42793.1	chr5	121660480	121660680	+	1	NA	NA	NA	17	NM_001289543	72399	Mm.153372	NM_028227	ENSMUSG00000029458	Brap	3010002G07Rik|BRAP2|IMP	BRCA1 associated protein	protein-coding	0.160000	0.761194	
mm_141672.1	chr17	33909076	33909276	-	1	NA	NA	NA	2	NR_045146	407803	Mm.250393	NR_045146	ENSMUSG00000092564	BC051226	-	cDNA sequence BC051226	ncRNA	0.045000	0.577114	
mm_154145.1	chr19	58443485	58443685	-	1	NA	NA	NA	11813	NM_001285457	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.005000	0.328358	
mm_35852.1	chr4	49383603	49383803	-	1	NA	NA	NA	24448	NM_145368	209186	Mm.35071	NM_145368	ENSMUSG00000060317	Acnat2	C730036D15Rik	acyl-coenzyme A amino acid N-acyltransferase 2	protein-coding	0.000000	0.532338	
mm_109553.1	chr12	111713217	111713417	+	1	NA	NA	NA	48	NM_026511	68020	Mm.425762	NM_026511	ENSMUSG00000037787	Apopt1	1700081D05Rik|2810002N01Rik|Apop-1|Apop1	apoptogenic, mitochondrial 1	protein-coding	0.165000	0.711443	
mm_43096.1	chr5	124460589	124460789	+	1	NA	NA	NA	13985	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.035000	0.562189	
mm_156431.1	chrX	141150399	141150599	+	1	NA	NA	NA	-193788	NM_001164177	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	0.000000	0.587065	
mm_142265.1	chr17	39845683	39845883	-	1	NA	NA	NA	2786	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.155000	0.796020	
mm_50273.1	chr6	45285074	45285274	+	1	NA	NA	NA	225113	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.005000	0.348259	
mm_52338.1	chr6	110649005	110649205	+	1	NA	NA	NA	3507	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.010000	0.313433	
mm_72797.1	chr8	87175272	87175472	+	1	NA	NA	NA	24478	NR_040697	100038706	Mm.334690	NR_040697	ENSMUSG00000099207	Gm10637	ENSMUSG00000074176	predicted gene 10637	ncRNA	0.000000	0.477612	50(GGCTTTTAATAG,-,0.00),52(CTTTTAATAGAG,+,0.00)
mm_27543.1	chr3	57692438	57692638	-	1	NA	NA	NA	-1	NM_001033349	242037	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	0.010000	0.477612	
mm_19748.1	chr2	104849399	104849599	-	1	NA	NA	NA	351	NM_178695	228413	Mm.259609	NM_178695	ENSMUSG00000027171	Prrg4	9930111I18Rik|TMG4	proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	protein-coding	0.095000	0.676617	
mm_101876.1	chr11	48893324	48893524	-	1	NA	NA	NA	8728	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.005000	0.358209	
mm_19482.1	chr2	93046056	93046256	-	1	NA	NA	NA	-12	NM_001177536	100042784	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	0.105000	0.666667	
mm_3595.1	chr1	151499817	151500017	+	1	NA	NA	NA	906	NM_011277	19821	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0.035000	0.412935	-34(TTCTTTAAAAAG,-,0.00),-32(CTTTAAAAAGAC,+,0.00)
mm_129340.1	chr15	77838474	77838674	-	1	NA	NA	NA	3601	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.005000	0.467662	
mm_45894.1	chr5	88670131	88670331	-	1	NA	NA	NA	5349	NM_001098476	231413	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.015000	0.427861	
mm_77950.1	chr9	7502243	7502443	+	1	NA	NA	NA	1	NM_019471	17384	Mm.14126	NM_019471	ENSMUSG00000047562	Mmp10	AV377895|MMP-10|SL-2	matrix metallopeptidase 10	protein-coding	0.010000	0.447761	-33(CCCTATAAAAGA,-,0.00),25(CGGTTTTTAAAG,-,0.00),27(GTTTTTAAAGTA,+,0.00)
mm_47412.1	chr5	123135454	123135654	-	1	NA	NA	NA	-2925	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.055000	0.616915	32(CTTTTTAGACTC,+,0.00)
mm_103962.1	chr11	84442556	84442756	-	1	NA	NA	NA	70845	NM_019816	56321	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0.010000	0.467662	
mm_168300.1	chr11	106250517	106250717	-	1	NA	NA	NA	5185	NM_025310	56095	Mm.29795	NM_025310	ENSMUSG00000020706	Ftsj3	AA537063|AU045295|C79843|D11Ertd400e|Epcs3	FtsJ RNA methyltransferase homolog 3 (E. coli)	protein-coding	0.000000	0.487562	
mm_108762.1	chr12	89403639	89403839	+	1	NA	NA	NA	-408744	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.000000	0.308458	
mm_10582.1	chr2	18171653	18171853	+	1	NA	NA	NA	107168	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.005000	0.278607	
mm_152983.1	chr19	29522081	29522281	-	1	NA	NA	NA	-101	NM_001081319	226089	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0.155000	0.786070	
mm_67023.1	chr7	66337057	66337257	-	1	NA	NA	NA	44567	NR_106024	102465640		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.005000	0.472637	
mm_153643.1	chr19	44215458	44215658	-	1	NA	NA	NA	12270	NM_024450	30049	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	0.040000	0.562189	
mm_140848.1	chr17	23676572	23676772	-	1	NA	NA	NA	777	NM_001161746	27279	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	0.075000	0.656716	
mm_84479.1	chr9	66834609	66834809	-	1	NA	NA	NA	-3	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.085000	0.671642	
mm_50094.1	chr6	41532893	41533093	+	1	NA	NA	NA	11217	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.020000	0.482587	-98(CCTTATATGACA,+,0.00)
mm_41839.1	chr5	104349040	104349240	+	1	NA	NA	NA	23811	NM_053172	94111	Mm.196672	NM_053172	ENSMUSG00000053863	Mepe	Of45	matrix extracellular phosphoglycoprotein with ASARM motif (bone)	protein-coding	0.000000	0.358209	
mm_118617.1	chr14	21052483	21052683	+	1	NA	NA	NA	9	NM_134079	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.075000	0.631841	
mm_138363.1	chr17	34998650	34998850	+	1	NA	NA	NA	1996	NM_033075	110956	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0.020000	0.507463	-40(GGGCCTAAAGGC,-,0.00)
mm_122299.1	chr14	34600042	34600242	-	1	NA	NA	NA	0	NM_001128599	30044	Mm.272060	NM_013887	ENSMUSG00000021799	Opn4	1110007J02Rik|Gm533	opsin 4 (melanopsin)	protein-coding	0.025000	0.582090	
mm_14733.1	chr2	144270933	144271133	+	1	NA	NA	NA	129	NM_001289630	74528	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintainance exonuclease 1	protein-coding	0.080000	0.587065	
mm_65570.1	chr7	27181057	27181257	-	1	NA	NA	NA	-8	NM_019394	12587	Mm.262447	NM_019394	ENSMUSG00000089661	Mia	CD-RAP|Cdrap|Mia1	melanoma inhibitory activity	protein-coding	0.020000	0.527363	
mm_17074.1	chr2	22745210	22745410	-	1	NA	NA	NA	-29017	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.010000	0.437811	
mm_86453.1	chr10	4341098	4341298	+	1	NA	NA	NA	46910	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.015000	0.487562	
mm_87588.1	chr10	57486336	57486536	+	1	NA	NA	NA	51	NM_008297	15500	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	0.155000	0.726368	
mm_99516.1	chr11	103116132	103116332	+	1	NA	NA	NA	-93	NM_138753	192231	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	0.050000	0.601990	
mm_154992.1	chrX	38328933	38329133	+	1	NA	NA	NA	12911	NM_133690	67821	Mm.60134	NM_133690	ENSMUSG00000016327	Atp1b4	1110020B02Rik	ATPase, (Na+)/K+ transporting, beta 4 polypeptide	protein-coding	0.000000	0.368159	
mm_165794.1	chr3	138860422	138860622	+	1	NA	NA	NA	118314	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.045000	0.542289	
mm_161230.1	chr13	83625182	83625382	+	1	NA	NA	NA	51675	NM_001347569	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.020000	0.427861	
mm_171583.1	chr4	147553121	147553321	+	1	NA	NA	NA	-56	NM_001014397	433804	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154|OTTMUSG00000010673	zinc finger protein 985	protein-coding	0.025000	0.502488	
mm_64903.1	chr7	16018145	16018345	-	1	NA	NA	NA	-18750	NM_001081418	243842	Mm.440249	NM_001081418	ENSMUSG00000070808	Gltscr1	-	glioma tumor suppressor candidate region gene 1	protein-coding	0.010000	0.482587	
mm_38414.1	chr4	139130697	139130897	-	1	NA	NA	NA	240	NR_033745	433771	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	0.155000	0.766169	
mm_10937.1	chr2	25468889	25469089	+	1	NA	NA	NA	760	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.010000	0.517413	
mm_109276.1	chr12	109546351	109546551	+	1	NA	NA	NA	1053	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.050000	0.606965	
mm_21219.1	chr2	155819319	155819519	-	1	NA	NA	NA	-216	NR_015528	613262	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	0.015000	0.621891	
mm_17389.1	chr2	27072081	27072281	-	1	NA	NA	NA	-20	NM_025376	66139	Mm.330087	NM_025376	ENSMUSG00000009214	Tmem8c	1110002H13Rik|AI131587	transmembrane protein 8C	protein-coding	0.010000	0.517413	
mm_31119.1	chr4	42952700	42952900	+	1	NA	NA	NA	-294	NM_019874	56323	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.025000	0.621891	
mm_57940.1	chr6	134792300	134792500	-	1	NA	NA	NA	228	NM_130447	70686	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	0.110000	0.611940	
mm_206.1	chr1	16618679	16618879	+	1	NA	NA	NA	559	NM_025773	66799	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0.135000	0.736318	
mm_49207.1	chr6	15720699	15720899	+	1	NA	NA	NA	138	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.090000	0.686567	
mm_50683.1	chr6	51575733	51575933	+	1	NA	NA	NA	31310	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.040000	0.567164	
mm_84668.1	chr9	71997155	71997355	-	1	NA	NA	NA	33814	NR_029879	723889		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.005000	0.472637	46(CCTCTTATGCCC,+,0.00)
mm_22138.1	chr2	170591553	170591753	-	1	NA	NA	NA	10364	NR_027825	67637	Mm.158163	NM_026287	ENSMUSG00000043583	4930470P17Rik	-	RIKEN cDNA 4930470P17 gene	ncRNA	0.005000	0.447761	
mm_19785.1	chr2	107005817	107006017	-	1	NA	NA	NA	-31520	NM_001025102	212772	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	0.010000	0.457711	-35(TTGTATAAAAAC,-,0.00)
mm_153334.1	chr19	38125182	38125382	-	1	NA	NA	NA	39	NM_001159487	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.010000	0.457711	
mm_121282.1	chr14	104128959	104129159	+	1	NA	NA	NA	-101917	NR_045953	73877	Mm.399172	NR_045953		4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.015000	0.472637	64(CTCCTTAAGAGC,-,0.00)
mm_121548.1	chr14	122475088	122475288	+	1	NA	NA	NA	11	NR_045046	69248	Mm.235369	NR_045046	ENSMUSG00000085555	2610035F20Rik	-	RIKEN cDNA 2610035F20 gene	ncRNA	0.125000	0.736318	
mm_152344.1	chr19	9984196	9984396	-	1	NA	NA	NA	1650	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.025000	0.482587	
mm_60931.1	chr7	46850144	46850344	+	1	NA	NA	NA	3162	NM_001136069	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.040000	0.527363	
mm_33624.1	chr4	132737527	132737727	+	1	NA	NA	NA	-5081	NM_201368	381560	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	0.035000	0.512438	-34(GTGTATTTAAGC,-,0.00)
mm_3965.1	chr1	164151709	164151909	+	1	NA	NA	NA	-26	NM_007976	14067	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	0.010000	0.567164	
mm_29360.1	chr3	108562237	108562437	-	1	NA	NA	NA	129	NM_026198	67495	Mm.32615	NM_026198	ENSMUSG00000068732	Tmem167b	2010200O16Rik	transmembrane protein 167B	protein-coding	0.115000	0.691542	
mm_82451.1	chr9	15357723	15357923	-	1	NA	NA	NA	-35	NM_176976	319675	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	0.150000	0.731343	
mm_47159.1	chr5	120685657	120685857	-	1	NA	NA	NA	25912	NM_008052	14357	Mm.1645	NM_008052	ENSMUSG00000029603	Dtx1	Fxit1|mKIAA4160	deltex 1, E3 ubiquitin ligase	protein-coding	0.030000	0.537313	
mm_57038.1	chr6	122339451	122339651	-	1	NA	NA	NA	106	NM_001042623	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.135000	0.766169	
mm_167390.1	chr8	94978802	94979002	+	1	NA	NA	NA	1793	NM_001198894	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.025000	0.532338	
mm_77634.1	chr8	124149698	124149898	-	1	NA	NA	NA	-81596	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0.035000	0.457711	-45(TCGCTTAAAAGG,-,0.00),-43(GCTTAAAAGGTG,+,0.00)
mm_142021.1	chr17	35204550	35204750	-	1	NA	NA	NA	-93	NR_105940	102466990		NR_105940	ENSMUSG00000099006	Mir6974	Gm27658|mmu-mir-6974	microRNA 6974	ncRNA	0.025000	0.631841	
mm_137367.1	chr17	25471501	25471701	+	1	NA	NA	NA	11	NM_027951	71840	Mm.282330	NM_027951	ENSMUSG00000024175	Tekt4	1700010L19Rik	tektin 4	protein-coding	0.010000	0.547264	-92(GGCCCTTTAAGA,-,0.00),-91(GCCCTTTAAGAG,-,0.00),-90(CCCTTTAAGAGG,-,0.00),-89(CCTTTAAGAGGG,+,0.00)
mm_91618.1	chr10	41685845	41686045	-	1	NA	NA	NA	-79350	NM_001303469	75973	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0.000000	0.353234	
mm_162260.1	chrY	797275	797475	-	1	NA	NA	NA	34	NM_009570	22767	Mm.4324	NM_009570	ENSMUSG00000053211	Zfy1	Zfy-1|Zfy2	zinc finger protein 1, Y-linked	protein-coding	0.055000	0.552239	
mm_38420.1	chr4	139192362	139192562	-	1	NA	NA	NA	-437	NM_009798	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.085000	0.671642	
mm_159740.1	chr5	66676692	66676892	+	1	NA	NA	NA	-295	NR_102714	101202684	Mm.381468	NR_102714	ENSMUSG00000087601	Uchl1os	Gm16832|Uchl1as	ubiquitin carboxy-terminal hydrolase L1, opposite strand	ncRNA	0.085000	0.701493	
mm_113597.1	chr13	41001210	41001410	+	1	NA	NA	NA	300	NM_026550	68083	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0.115000	0.676617	
mm_98249.1	chr11	88222141	88222341	+	1	NA	NA	NA	17853	NM_001291271	64656	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	0.030000	0.477612	
mm_121691.1	chr14	13961140	13961340	-	1	NA	NA	NA	73	NM_001285780	66231	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.150000	0.736318	
mm_69333.1	chr7	128744646	128744846	-	1	NA	NA	NA	-124	NM_001029982	207352	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	0.055000	0.502488	
mm_34249.1	chr4	141282706	141282906	+	1	NA	NA	NA	-18415	NM_010139	13836	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	0.010000	0.507463	
mm_145610.1	chr18	61099383	61099583	+	1	NA	NA	NA	-6089	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.015000	0.363184	-31(TACTTTTTAAGC,-,0.00)
mm_35509.1	chr4	41093579	41093779	-	1	NA	NA	NA	4504	NM_016689	11828	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	0.030000	0.616915	
mm_137346.1	chr17	25159577	25159777	+	1	NA	NA	NA	-2784	NM_001079929	207209	Mm.207121	NM_001079929	ENSMUSG00000059562	Ccdc154	Ccdc157|Gm317	coiled-coil domain containing 154	protein-coding	0.030000	0.537313	
mm_11395.1	chr2	31462069	31462269	+	1	NA	NA	NA	-8101	NM_007494	11898	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.015000	0.492537	
mm_168082.1	chr10	121944884	121945084	-	1	NA	NA	NA	102331	NM_001242411	117600	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.040000	0.562189	
mm_117335.1	chr13	69534026	69534226	-	1	NA	NA	NA	-262	NM_001169131	210106	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.150000	0.761194	
mm_164774.1	chr17	90075023	90075223	+	1	NA	NA	NA	13245	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.005000	0.393035	
mm_160273.1	chr7	118764247	118764447	+	1	NA	NA	NA	24076	NM_027815	71517	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	0.020000	0.562189	
mm_165955.1	chr4	87229927	87230127	-	1	NA	NA	NA	513	NM_172426	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	0.045000	0.587065	
mm_13606.1	chr2	113327632	113327832	+	1	NA	NA	NA	-4	NM_001285458	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.075000	0.661692	
mm_105033.1	chr11	100527770	100527970	-	1	NA	NA	NA	130	NM_134037	104112	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	0.080000	0.651741	
mm_39602.1	chr5	23787666	23787866	+	1	NA	NA	NA	55	NM_001310467	72772	Mm.133300	NM_177323	ENSMUSG00000028999	Rint1	1500019C06Rik|2810450M21Rik|Rint-1	RAD50 interactor 1	protein-coding	0.075000	0.606965	
mm_95998.1	chr11	59209044	59209244	+	1	NA	NA	NA	783	NM_024210	67862	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	0.040000	0.587065	
mm_76555.1	chr8	88361933	88362133	-	1	NA	NA	NA	158	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.145000	0.756219	
mm_128178.1	chr15	34443629	34443829	-	1	NA	NA	NA	-453	NM_001163485	19946	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	0.060000	0.507463	
mm_127950.1	chr15	10720243	10720443	-	1	NA	NA	NA	5443	NR_045065	75259	Mm.33928	NR_045063	ENSMUSG00000097058	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	0.025000	0.517413	
mm_156274.1	chrX	136836022	136836222	+	1	NA	NA	NA	13376	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.015000	0.477612	
mm_30883.1	chr4	32248447	32248647	+	1	NA	NA	NA	-168888	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.030000	0.532338	
mm_164272.1	chr15	101485113	101485313	+	1	NA	NA	NA	6090	NM_016879	53622	Mm.347934	NM_016879		Krt85	AA589597|BB007925|Hb5|Krt2-18	keratin 85	protein-coding	0.000000	0.542289	
mm_119945.1	chr14	54990640	54990840	+	1	NA	NA	NA	3809	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.010000	0.482587	
mm_23370.1	chr3	55461814	55462014	+	1	NA	NA	NA	156	NM_001195540	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.035000	0.582090	
mm_7082.1	chr1	88462481	88462681	-	1	NA	NA	NA	47485	NM_008132	14659	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding	0.020000	0.577114	
mm_105800.1	chr11	110154648	110154848	-	1	NA	NA	NA	13405	NM_147220	217262	Mm.291459	NM_147220	ENSMUSG00000041797	Abca9	D630040K07Rik	ATP-binding cassette, sub-family A (ABC1), member 9	protein-coding	0.005000	0.447761	1(TCCCCTTTAAGG,-,0.00),3(CCCTTTAAGGAT,+,0.00)
mm_47841.1	chr5	134314431	134314631	-	1	NA	NA	NA	229	NM_001080746	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.125000	0.776119	
mm_72455.1	chr8	83172796	83172996	+	1	NA	NA	NA	7544	NM_027758	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.025000	0.427861	
mm_18751.1	chr2	73386338	73386538	-	1	NA	NA	NA	42	NM_001276443	68526	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0.085000	0.686567	
mm_17748.1	chr2	32714855	32715055	-	1	NA	NA	NA	-1983	NR_039536	100628606		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0.015000	0.577114	
mm_57767.1	chr6	129235724	129235924	-	1	NA	NA	NA	2221	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.000000	0.442786	
mm_26667.1	chr3	154711029	154711229	+	1	NA	NA	NA	-4	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.010000	0.537313	
mm_127329.1	chr15	100364468	100364668	+	1	NA	NA	NA	-17	NM_001002900	380975	Mm.268451	NM_001002900	ENSMUSG00000093550	Higd1c	Gm921|HIG1-4|Yghl1-4	HIG1 domain family, member 1C	protein-coding	0.015000	0.477612	
mm_163989.1	chr14	62654166	62654366	+	1	NA	NA	NA	-9401	NM_001199945	319433	Mm.483827	NM_001199945	ENSMUSG00000091155	Serpine3	E130113E03Rik	serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3	protein-coding	0.000000	0.457711	
mm_25347.1	chr3	106785384	106785584	+	1	NA	NA	NA	4665	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.000000	0.422886	
mm_24311.1	chr3	89418543	89418743	+	1	NA	NA	NA	92	NM_011368	20416	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	0.055000	0.577114	
mm_170114.1	chr17	39845448	39845648	+	1	NA	NA	NA	2551	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.130000	0.721393	
mm_85142.1	chr9	95815259	95815459	-	1	NA	NA	NA	29920	NM_001033210	102502	Mm.11869	NM_001033210	ENSMUSG00000049493	Pls1	AI427122	plastin 1 (I-isoform)	protein-coding	0.020000	0.457711	
mm_77395.1	chr8	120332803	120333003	-	1	NA	NA	NA	-104673	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.020000	0.567164	
mm_70564.1	chr8	13105640	13105840	+	1	NA	NA	NA	19	NM_146207	99375	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	0.145000	0.786070	
mm_32758.1	chr4	116687228	116687428	+	1	NA	NA	NA	-1306	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.000000	0.407960	
mm_48780.1	chr5	148552320	148552520	-	1	NA	NA	NA	368	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.150000	0.686567	
mm_48554.1	chr5	143055926	143056126	-	1	NA	NA	NA	56994	NM_207110	108086	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.000000	0.393035	
mm_169387.1	chr14	42133783	42133983	+	1	NA	NA	NA	-38606	NR_073362	73553	Mm.243777	NM_028570	ENSMUSG00000090462	1700091H14Rik	100041930|Gm3578	RIKEN cDNA 1700091H14 gene	ncRNA	0.045000	0.661692	
mm_125040.1	chr15	25774147	25774347	+	1	NA	NA	NA	-69051	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.035000	0.507463	-84(CTTTTTAAAGCA,+,0.00)
mm_46526.1	chr5	105415596	105415796	-	1	NA	NA	NA	-79	NM_001033550	433926	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0.200000	0.796020	
mm_154079.1	chr19	56548139	56548339	-	1	NA	NA	NA	-17	NM_018831	55947	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0.045000	0.422886	-80(ACGTTTAAAAGA,-,0.00)
mm_2383.1	chr1	93478971	93479171	+	1	NA	NA	NA	10	NM_001159719	18000	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	0.125000	0.681592	
mm_149228.1	chr19	10041570	10041770	+	1	NA	NA	NA	122	NM_021890	60527	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0.110000	0.726368	
mm_108237.1	chr12	77241256	77241456	+	1	NA	NA	NA	2617	NR_045554	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.010000	0.388060	
mm_2415.1	chr1	94016810	94017010	+	1	NA	NA	NA	-3583	NM_173772	241159	Mm.214565	NM_173772	ENSMUSG00000034000	Neu4	9330166I04	sialidase 4	protein-coding	0.005000	0.393035	
mm_34619.1	chr4	150548796	150548996	+	1	NA	NA	NA	103278	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.010000	0.378109	
mm_22091.1	chr2	168767192	168767392	-	1	NA	NA	NA	-91	NM_175303	99377	Mm.434054	NM_175303	ENSMUSG00000027547	Sall4	5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20	sal-like 4 (Drosophila)	protein-coding	0.035000	0.542289	
mm_8806.1	chr1	161876529	161876729	-	1	NA	NA	NA	32	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.150000	0.781095	
mm_115194.1	chr13	108859989	108860189	+	1	NA	NA	NA	205912	NM_011056	238871	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	0.020000	0.472637	
mm_46215.1	chr5	98484153	98484353	-	1	NA	NA	NA	-8589	NR_030484	735265		NR_030484	ENSMUSG00000105814	Mir703	Mirn703|mir-703|mmu-mir-703	microRNA 703	ncRNA	0.015000	0.492537	
mm_169936.1	chr16	61377037	61377237	+	1	NA	NA	NA	-771606	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0.070000	0.577114	
mm_24482.1	chr3	92024403	92024603	+	1	NA	NA	NA	9920	NM_207247	242100	Mm.297406	NM_207247	ENSMUSG00000042244	Pglyrp3	Gm420	peptidoglycan recognition protein 3	protein-coding	0.050000	0.452736	
mm_152044.1	chr19	6141048	6141248	-	1	NA	NA	NA	-11	NM_019722	56327	Mm.21071	NM_019722	ENSMUSG00000024944	Arl2	2610009M23Rik|AI115441|AW553335	ADP-ribosylation factor-like 2	protein-coding	0.090000	0.656716	
mm_167717.1	chr9	98504851	98505051	+	1	NA	NA	NA	14414	NM_009034	19660	Mm.12825	NM_009034	ENSMUSG00000032454	Rbp2	Crbp-2|CrbpII|Rbp-2	retinol binding protein 2, cellular	protein-coding	0.000000	0.507463	
mm_75790.1	chr8	70095442	70095642	-	1	NA	NA	NA	7044	NR_106033	102465646		NR_106033	ENSMUSG00000099042	Mir7066	Gm27290|mmu-mir-7066	microRNA 7066	ncRNA	0.015000	0.522388	-92(TCTTATATACTG,+,0.00),-68(TCTCTTAGAGCC,+,0.00)
mm_96757.1	chr11	69911255	69911455	+	1	NA	NA	NA	-2837	NM_019726	56310	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953	G protein pathway suppressor 2	protein-coding	0.015000	0.557214	-95(GCCCTTTAAAGA,-,0.00),-94(CCCTTTAAAGAG,+,0.00),-94(CCCTTTAAAGAG,-,0.00),-93(CCTTTAAAGAGC,+,0.00)
mm_80902.1	chr9	100450261	100450461	+	1	NA	NA	NA	36112	NM_001033543	213208	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.010000	0.577114	
mm_25512.1	chr3	110250061	110250261	+	1	NA	NA	NA	838	NM_178891	99890	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	0.085000	0.671642	
mm_127774.1	chr15	3279568	3279768	-	1	NA	NA	NA	8691	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.010000	0.437811	
mm_82326.1	chr9	8134354	8134554	-	1	NA	NA	NA	-160	NM_001045524	234915	Mm.101341	NM_001045524	ENSMUSG00000040729	Cep126	Kiaa1377|mKIAA1377	centrosomal protein 126	protein-coding	0.165000	0.751244	
mm_154193.1	chr19	58860886	58861086	-	1	NA	NA	NA	-2	NM_175199	73442	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0.060000	0.686567	
mm_39407.1	chr5	14520803	14521003	+	1	NA	NA	NA	5985	NM_001110796	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.030000	0.497512	
mm_65526.1	chr7	25787312	25787512	-	1	NA	NA	NA	1321	NM_001190974	26362	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.030000	0.592040	
mm_43985.1	chr5	146385146	146385346	+	1	NA	NA	NA	240	NM_145155	245880	Mm.472750	NM_145155	ENSMUSG00000029636	Wasf3	Scar3|Wave3	WAS protein family, member 3	protein-coding	0.155000	0.776119	
mm_48279.1	chr5	138155617	138155817	-	1	NA	NA	NA	27	NM_019747	56314	Mm.19274	NM_019747	ENSMUSG00000037007	Zfp113	4732456B05Rik|mKIAA4229	zinc finger protein 113	protein-coding	0.040000	0.557214	
mm_11595.1	chr2	33446671	33446871	+	1	NA	NA	NA	-15447	NM_001276332	241311	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0.005000	0.562189	
mm_64732.1	chr7	4723728	4723928	-	1	NA	NA	NA	1254	NM_001142792	330460	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	0.030000	0.547264	
mm_29343.1	chr3	108256723	108256923	-	1	NA	NA	NA	-103	NM_011967	26442	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	0.080000	0.582090	
mm_15530.1	chr2	158382832	158383032	+	1	NA	NA	NA	7294	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.015000	0.373134	
mm_88239.1	chr10	71482897	71483097	+	1	NA	NA	NA	135234	NM_027184	69718	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.000000	0.507463	
mm_132443.1	chr16	35956943	35957143	+	1	NA	NA	NA	-18016	NM_001013371	209200	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0.010000	0.398010	
mm_129389.1	chr15	78204073	78204273	-	1	NA	NA	NA	64	NM_001330686	19293	Mm.2766	NM_013645	ENSMUSG00000005716	Pvalb	PV|Parv|Pva	parvalbumin	protein-coding	0.075000	0.572139	
mm_128214.1	chr15	36164761	36164961	-	1	NA	NA	NA	23	NM_001081253	78803	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	0.120000	0.756219	
mm_169877.1	chr16	37776922	37777122	+	1	NA	NA	NA	-33	NM_008047	14314	Mm.182434	NM_008047	ENSMUSG00000022816	Fstl1	AI316791|AW107808|Fstl|TSC-36	follistatin-like 1	protein-coding	0.090000	0.721393	1(GGGTCTTAAGGG,-,0.00)
mm_84608.1	chr9	70197374	70197574	-	1	NA	NA	NA	-9876	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.020000	0.472637	
mm_55656.1	chr6	72381657	72381857	-	1	NA	NA	NA	-1289	NM_001080742	53620	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0.025000	0.472637	88(CCTTTACAAGTC,+,0.00)
mm_8418.1	chr1	152287905	152288105	-	1	NA	NA	NA	98677	NM_025677	66637	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	0.010000	0.462687	
mm_95829.1	chr11	55469597	55469797	+	1	NA	NA	NA	-55	NM_013716	27041	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0.130000	0.706468	
mm_2549.1	chr1	107589986	107590186	+	1	NA	NA	NA	80	NM_001159748	20725	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	0.020000	0.527363	
mm_26451.1	chr3	142637625	142637825	+	1	NA	NA	NA	-13779	NR_105802	102465200		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.010000	0.467662	
mm_91105.1	chr10	19117004	19117204	-	1	NA	NA	NA	-24645	NR_038021	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.010000	0.442786	
mm_84433.1	chr9	66059854	66060054	-	1	NA	NA	NA	-215	NM_011149	19035	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	0.045000	0.532338	
mm_73235.1	chr8	104133723	104133923	+	1	NA	NA	NA	-27950	NR_131138	546096	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	-	predicted gene, 29682	ncRNA	0.000000	0.318408	
mm_40329.1	chr5	43910604	43910804	+	1	NA	NA	NA	41895	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.000000	0.388060	
mm_51755.1	chr6	87742233	87742433	+	1	NA	NA	NA	11464	NM_001159697	58229	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.015000	0.497512	
mm_79600.1	chr9	58488075	58488275	+	1	NA	NA	NA	-428	NM_176921	319477	Mm.153674	NM_176921	ENSMUSG00000066607	6030419C18Rik	-	RIKEN cDNA 6030419C18 gene	protein-coding	0.160000	0.835821	
mm_110523.1	chr12	54867101	54867301	-	1	NA	NA	NA	-4324	NM_007688	12632	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	0.010000	0.512438	
mm_166845.1	chr7	19696384	19696584	+	1	NA	NA	NA	1914	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.030000	0.582090	
mm_155405.1	chrX	73342522	73342722	+	1	NA	NA	NA	1	NM_001160229	27081	Mm.26595	NM_031494	ENSMUSG00000031365	Zfp275	5430431L06Rik|AI593314|DXBay20|DXHXS52|DXPas8	zinc finger protein 275	protein-coding	0.120000	0.736318	
mm_55381.1	chr6	58907010	58907210	-	1	NA	NA	NA	16	NM_021432	58243	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.080000	0.601990	
mm_135257.1	chr16	37835644	37835844	-	1	NA	NA	NA	-32656	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.005000	0.452736	
mm_87949.1	chr10	63039009	63039209	+	1	NA	NA	NA	14597	NM_026085	67307	Mm.368563	NM_026085	ENSMUSG00000020072	Pbld2	3110049J23Rik|Mawbp	phenazine biosynthesis-like protein domain containing 2	protein-coding	0.035000	0.467662	
mm_99353.1	chr11	101584357	101584557	+	1	NA	NA	NA	2215	NM_144830	217203	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.010000	0.537313	
mm_157570.1	chrX	52569020	52569220	-	1	NA	NA	NA	-6723	NR_045367	100504594	Mm.447008	NR_045367	ENSMUSG00000055110	A630012P03Rik	-	RIKEN cDNA A630012P03 gene	ncRNA	0.025000	0.457711	
mm_85240.1	chr9	98955208	98955408	-	1	NA	NA	NA	2	NR_003248	768252	Mm.129645	NR_003248	ENSMUSG00000097072	Foxl2os	ENSMUSG00000074122	forkhead box L2, opposite strand	ncRNA	0.100000	0.706468	
mm_167405.1	chr8	104250894	104251094	+	1	NA	NA	NA	133	NM_001286383	75458	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	0.070000	0.597015	
mm_17660.1	chr2	32079245	32079445	-	1	NA	NA	NA	4360	NM_175511	241303	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.015000	0.597015	
mm_85356.1	chr9	103214438	103214638	-	1	NA	NA	NA	-12473	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.015000	0.527363	
mm_16774.1	chr2	9881874	9882074	-	1	NA	NA	NA	728	NR_024257	381347	Mm.441450	NR_024257		4930412O13Rik	ENSMUSG00000075535|Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.010000	0.532338	
mm_32248.1	chr4	102570089	102570289	+	1	NA	NA	NA	129	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.010000	0.507463	
mm_37010.1	chr4	112433910	112434110	-	1	NA	NA	NA	-25	NM_177864	329918	Mm.246783	NM_177864	ENSMUSG00000049972	Skint9	A030013N09Rik|Skint-9	selection and upkeep of intraepithelial T cells 9	protein-coding	0.000000	0.412935	
mm_147108.1	chr18	35702992	35703192	-	1	NA	NA	NA	52	NM_029669	76594	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	0.075000	0.597015	
mm_94749.1	chr11	21105909	21106109	+	1	NA	NA	NA	14685	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.005000	0.258706	41(GTTTTTAAACAC,+,0.00)
mm_151169.1	chr19	53197946	53198146	+	1	NA	NA	NA	54049	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.015000	0.497512	
mm_138406.1	chr17	35066776	35066976	+	1	NA	NA	NA	-449	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.010000	0.482587	
mm_17256.1	chr2	25847202	25847402	-	1	NA	NA	NA	-54	NM_001001714	227631	Mm.301632	NM_001001714	ENSMUSG00000059625	Sohlh1	Gm110|Nohlh	spermatogenesis and oogenesis specific basic helix-loop-helix 1	protein-coding	0.040000	0.661692	
mm_104631.1	chr11	97435835	97436035	-	1	NA	NA	NA	-14225	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.010000	0.611940	
mm_22497.1	chr3	7289406	7289606	+	1	NA	NA	NA	-77098	NM_008862	18767	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	0.000000	0.467662	
mm_133771.1	chr16	94694132	94694332	+	1	NA	NA	NA	82813	NM_001347731	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.015000	0.368159	
mm_34970.1	chr4	156008773	156008973	+	1	NA	NA	NA	-4822	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.025000	0.542289	
mm_157797.1	chrX	73911194	73911394	-	1	NA	NA	NA	4	NM_138630	171207	Mm.482337	NM_138630	ENSMUSG00000031389	Arhgap4	A130009C12Rik|A530015A20Rik|Rgc1|c1|mKIAA0131	Rho GTPase activating protein 4	protein-coding	0.120000	0.756219	
mm_146214.1	chr18	76948938	76949138	+	1	NA	NA	NA	4620	NM_001039201	76987	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	0.020000	0.522388	
mm_116542.1	chr13	45933163	45933363	-	1	NA	NA	NA	31728	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.005000	0.388060	-7(TTTTTTAAAGAC,+,0.00)
mm_17871.1	chr2	34944419	34944619	-	1	NA	NA	NA	17253	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.000000	0.393035	
mm_54150.1	chr6	22355933	22356133	-	1	NA	NA	NA	48	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.185000	0.805970	
mm_75530.1	chr8	57320212	57320412	-	1	NA	NA	NA	547	NR_110474	102636514		NR_110474	ENSMUSG00000100510	Uph	-	upperhand	ncRNA	0.035000	0.492537	
mm_440.1	chr1	34801642	34801842	+	1	NA	NA	NA	20	NM_183019	226970	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef|ENSMUSG00000070955	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0.080000	0.706468	
mm_8608.1	chr1	156035860	156036060	-	1	NA	NA	NA	-76	NM_001160182	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.105000	0.636816	
mm_4344.1	chr1	171856828	171857028	+	1	NA	NA	NA	17231	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.313433	
mm_27228.1	chr3	36449255	36449455	-	1	NA	NA	NA	26169	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.035000	0.597015	-36(GACTATAAGAAG,-,0.00)
mm_37863.1	chr4	132303241	132303441	-	1	NA	NA	NA	15	NM_001081651	242681	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	0.070000	0.646766	
mm_7832.1	chr1	132131761	132131961	-	1	NA	NA	NA	7824	NM_008795	18557	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.000000	0.616915	
mm_112154.1	chr12	113287768	113287968	-	1	NA	NA	NA	101965	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.010000	0.542289	
mm_66848.1	chr7	49636817	49637017	-	1	NA	NA	NA	-82	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.045000	0.517413	
mm_110330.1	chr12	35527517	35527717	-	1	NA	NA	NA	7372	NM_013464	11622	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0.020000	0.467662	57(GTCCATTTAAGA,-,0.00)
mm_13016.1	chr2	90970377	90970577	+	1	NA	NA	NA	30080	NM_017368	13046	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	0.005000	0.353234	-6(TTTTTTAAAAGC,-,0.00),-5(TTTTTAAAAGCC,+,0.00)
mm_167499.1	chr9	13296681	13296881	+	1	NA	NA	NA	49825	NM_025534	66396	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.055000	0.606965	
mm_46831.1	chr5	113221136	113221336	-	1	NA	NA	NA	-5673	NM_001033428	333048	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	0.200000	0.860697	
mm_171195.1	chr3	46141451	46141651	+	1	NA	NA	NA	306390	NM_001101479	241989	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding	0.050000	0.626866	
mm_126395.1	chr15	80192979	80193179	+	1	NA	NA	NA	19358	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.010000	0.567164	
mm_17250.1	chr2	25684101	25684301	-	1	NA	NA	NA	1475	NM_178036	332578	Mm.246797	NM_178036	ENSMUSG00000047356	Lcn10	9230112J07Rik	lipocalin 10	protein-coding	0.035000	0.601990	
mm_116792.1	chr13	53472619	53472819	-	1	NA	NA	NA	61	NM_013601	17702	Mm.1763	NM_013601	ENSMUSG00000021469	Msx2	BB122635|Hox-8|Hox8|Hox8.1	msh homeobox 2	protein-coding	0.105000	0.681592	
mm_28824.1	chr3	96290118	96290318	-	1	NA	NA	NA	3751	NM_010186	14129	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0.005000	0.422886	
mm_128936.1	chr15	74672469	74672669	-	1	NA	NA	NA	1	NM_001276684	11838	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	0.105000	0.691542	-31(GCATAAATAGCC,+,0.00)
mm_134947.1	chr16	31297359	31297559	-	1	NA	NA	NA	17349	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.025000	0.422886	
mm_140197.1	chr17	83666742	83666942	+	1	NA	NA	NA	-34947	NM_153512	225030	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.025000	0.577114	
mm_113302.1	chr13	30749139	30749339	+	1	NA	NA	NA	6	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.045000	0.601990	-37(GGCTCTATAAAG,-,0.00)
mm_104627.1	chr11	97310227	97310427	-	1	NA	NA	NA	-5389	NM_025927	67036	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.040000	0.542289	
mm_113143.1	chr13	24705982	24706182	+	1	NA	NA	NA	55855	NM_020567	57441	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.025000	0.522388	
mm_66283.1	chr7	37772654	37772854	-	1	NA	NA	NA	-3002	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.075000	0.542289	
mm_53467.1	chr6	134920596	134920796	+	1	NA	NA	NA	295	NM_009875	12576	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	0.080000	0.661692	
mm_132339.1	chr16	33829644	33829844	+	1	NA	NA	NA	79	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.115000	0.701493	
mm_164129.1	chr15	41504883	41505083	+	1	NA	NA	NA	57501	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.000000	0.368159	
mm_170451.1	chr18	84838525	84838725	-	1	NA	NA	NA	-12789	NM_025797	109672	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.070000	0.671642	
mm_140043.1	chr17	74489488	74489688	+	1	NA	NA	NA	95	NM_026417	67864	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	0.120000	0.751244	
mm_105162.1	chr11	101599166	101599366	-	1	NA	NA	NA	-11434	NM_001256318	666331	Mm.303457	NM_001256318		LOC666331	-	uncharacterized LOC666331	protein-coding	0.020000	0.572139	
mm_138009.1	chr17	33843007	33843207	+	1	NA	NA	NA	16	NM_019421	54219	Mm.11175	NM_019421	ENSMUSG00000002308	Cd320	425O18-1|8D6|D17Ertd716e|NG29|TCblR|VLDL	CD320 antigen	protein-coding	0.090000	0.646766	
mm_123453.1	chr14	65262341	65262541	-	1	NA	NA	NA	22	NM_021458	14365	Mm.214687	NM_021458	ENSMUSG00000007989	Fzd3	AU020229|D930050A07Rik|Fz3	frizzled class receptor 3	protein-coding	0.165000	0.786070	
mm_32373.1	chr4	105794077	105794277	+	1	NA	NA	NA	-522036	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.055000	0.527363	
mm_110390.1	chr12	41412545	41412745	-	1	NA	NA	NA	73412	NM_001271708	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.015000	0.398010	
mm_157540.1	chrX	51205556	51205756	-	1	NA	NA	NA	334	NM_001310515	171170	Mm.295324	NM_134163	ENSMUSG00000036109	Mbnl3	A530038J18Rik|AI661274|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL	muscleblind-like 3 (Drosophila)	protein-coding	0.125000	0.711443	
mm_67492.1	chr7	80743037	80743237	-	1	NA	NA	NA	-54260	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.015000	0.532338	
mm_24215.1	chr3	88644680	88644880	+	1	NA	NA	NA	8362	NM_181817	242093	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0.000000	0.472637	
mm_20852.1	chr2	148395780	148395980	-	1	NA	NA	NA	503	NM_009219	20608	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0.085000	0.651741	
mm_16135.1	chr2	170470751	170470951	+	1	NA	NA	NA	-25577	NM_001013369	109054	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	0.015000	0.512438	
mm_141170.1	chr17	26561276	26561476	-	1	NA	NA	NA	-136	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.070000	0.636816	-36(CCCCATTAAAGG,-,0.00),-34(CCATTAAAGGGG,+,0.00)
mm_100708.1	chr11	3722072	3722272	-	1	NA	NA	NA	55	NM_001302631	74309	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	0.005000	0.606965	
mm_31727.1	chr4	62965489	62965689	+	1	NA	NA	NA	15	NM_028326	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.185000	0.865672	
mm_36280.1	chr4	63745098	63745298	-	1	NA	NA	NA	-85	NM_177371	326623	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0.015000	0.457711	
mm_7366.1	chr1	106713906	106714106	-	1	NA	NA	NA	284	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.070000	0.626866	
mm_130351.1	chr15	97750622	97750822	-	1	NA	NA	NA	16944	NM_001177810	223864	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.015000	0.606965	
mm_96557.1	chr11	68956885	68957085	+	1	NA	NA	NA	-127	NM_177566	442801	Mm.376147	NM_177566	ENSMUSG00000052921	Arhgef15	D130071N09|D530030K12Rik|E5	Rho guanine nucleotide exchange factor (GEF) 15	protein-coding	0.035000	0.587065	
mm_120490.1	chr14	65979703	65979903	+	1	NA	NA	NA	11320	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.035000	0.567164	
mm_64721.1	chr7	4658663	4658863	-	1	NA	NA	NA	187	NM_172894	243819	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.145000	0.686567	
mm_115800.1	chr13	19356193	19356393	-	1	NA	NA	NA	39520	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.527363	
mm_108805.1	chr12	92005463	92005663	+	1	NA	NA	NA	-156406	NM_011344	20338	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0.000000	0.343284	
mm_68125.1	chr7	102163638	102163838	-	1	NA	NA	NA	46129	NM_001287167	269966	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	0.005000	0.388060	
mm_35934.1	chr4	53032518	53032718	-	1	NA	NA	NA	20738	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.000000	0.388060	
mm_133773.1	chr16	94721862	94722062	+	1	NA	NA	NA	110543	NM_001347731	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.015000	0.532338	
mm_156626.1	chrX	155262353	155262553	+	1	NA	NA	NA	10	NM_019736	56360	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	0.065000	0.651741	
mm_60295.1	chr7	44015199	44015399	+	1	NA	NA	NA	2602	NM_010115	13647	Mm.439663	NM_010115		Egfbp2	Egfbp-2|Klk1b26|mGk-13	epidermal growth factor binding protein type B	protein-coding	0.015000	0.527363	
mm_101185.1	chr11	17052254	17052454	-	1	NA	NA	NA	420	NM_029861	380686	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	0.035000	0.601990	
mm_53280.1	chr6	128674656	128674856	+	1	NA	NA	NA	12371	NM_053165	94071	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	0.005000	0.412935	
mm_21124.1	chr2	153870990	153871190	-	1	NA	NA	NA	-6	NM_029599	76407	Mm.33629	NM_029599	ENSMUSG00000027480	Sun5	1700021O15Rik|SPAG4L-2|SRG4|Spag4l	Sad1 and UNC84 domain containing 5	protein-coding	0.010000	0.497512	72(CCCTTTATAAAA,-,0.00),74(CTTTATAAAAGG,-,0.00)
mm_40601.1	chr5	64264278	64264478	+	1	NA	NA	NA	34021	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.035000	0.587065	
mm_81728.1	chr9	113279198	113279398	+	1	NA	NA	NA	307854	NR_040760	102688	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	0.005000	0.457711	
mm_22237.1	chr2	174438913	174439113	-	1	NA	NA	NA	26	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.100000	0.701493	
mm_59983.1	chr7	30493549	30493749	+	1	NA	NA	NA	-9	NM_019546	56189	Mm.270525	NM_019546	ENSMUSG00000036892	Prodh2	2510028N04Rik|2510038B11Rik|MmPOX|MmPOX1|POX1	proline dehydrogenase (oxidase) 2	protein-coding	0.015000	0.587065	
mm_117635.1	chr13	92354412	92354612	-	1	NA	NA	NA	-271	NM_010049	13361	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0.050000	0.537313	
mm_163717.1	chr13	111808549	111808749	-	1	NA	NA	NA	334	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.160000	0.786070	
mm_144076.1	chr17	91092669	91092869	-	1	NA	NA	NA	33	NM_177284	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.045000	0.572139	
mm_71609.1	chr8	56319955	56320155	+	1	NA	NA	NA	25503	NM_008278	15446	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.010000	0.333333	
mm_166692.1	chr6	113660601	113660801	+	1	NA	NA	NA	22234	NM_001113553	108960	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.040000	0.507463	
mm_105816.1	chr11	112131682	112131882	-	1	NA	NA	NA	579574	NR_024085	217294	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA	0.020000	0.437811	
mm_103220.1	chr11	70656357	70656557	-	1	NA	NA	NA	-719	NM_001136062	13808	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.040000	0.487562	
mm_73658.1	chr8	110997785	110997985	+	1	NA	NA	NA	-62	NM_007916	13680	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	0.085000	0.587065	
mm_11155.1	chr2	28540177	28540377	+	1	NA	NA	NA	6813	NM_001145836	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.010000	0.572139	
mm_79732.1	chr9	62342033	62342233	+	1	NA	NA	NA	790	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.095000	0.606965	
mm_143451.1	chr17	70921661	70921861	-	1	NA	NA	NA	-68229	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.030000	0.542289	
mm_146667.1	chr18	12213281	12213481	-	1	NA	NA	NA	23005	NM_008720	18145	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	Niemann-Pick type C1	protein-coding	0.020000	0.567164	
mm_155883.1	chrX	101527502	101527702	+	1	NA	NA	NA	-5133	NM_001290729	270627	Mm.261750	NM_001081008	ENSMUSG00000031314	Taf1	AU015687|B430306D02Rik|Ccg-1|Ccg1|KAT4|N-TAF1|TAFII250|Taf2a|p250	TATA-box binding protein associated factor 1	protein-coding	0.035000	0.452736	69(TTTTAAATAGCC,+,0.00)
mm_116893.1	chr13	55362693	55362893	-	1	NA	NA	NA	-10	NM_025828	66890	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding	0.060000	0.597015	
mm_49682.1	chr6	32968186	32968386	+	1	NA	NA	NA	91866	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0.015000	0.422886	
mm_107706.1	chr12	55492613	55492813	+	1	NA	NA	NA	-66	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.055000	0.587065	-95(CGCCCTATAAAC,-,0.00),-93(CCCTATAAACGC,+,0.00),-26(GACTAGAAAAAG,-,0.00)
mm_30028.1	chr3	135687807	135688007	-	1	NA	NA	NA	3640	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.015000	0.512438	
mm_154037.1	chr19	53541022	53541222	-	1	NA	NA	NA	11804	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.025000	0.577114	
mm_5113.1	chr1	6382444	6382644	-	1	NA	NA	NA	23213	NM_001195732	620393	Mm.388992	NM_001195732	ENSMUSG00000087247	Fam150a	EG620393	family with sequence similarity 150, member A	protein-coding	0.015000	0.363184	
mm_25981.1	chr3	133310067	133310267	+	1	NA	NA	NA	57	NM_146141	74776	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0.165000	0.786070	
mm_150850.1	chr19	44992028	44992228	+	1	NA	NA	NA	2784	NM_011976	26456	Mm.34404	NM_011976	ENSMUSG00000025207	Sema4g	AI507908|AW554132	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	protein-coding	0.005000	0.437811	
mm_17151.1	chr2	25214495	25214695	-	1	NA	NA	NA	35	NM_028961	74472	Mm.176944	NM_028961	ENSMUSG00000036770	Stpg3	4933433C11Rik	sperm tail PG rich repeat containing 3	protein-coding	0.005000	0.547264	
mm_141163.1	chr17	26509464	26509664	-	1	NA	NA	NA	-1092	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.035000	0.522388	
mm_8291.1	chr1	143093847	143094047	-	1	NA	NA	NA	-546750	NM_020025	26878	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.030000	0.492537	
mm_30622.1	chr4	8691242	8691442	+	1	NA	NA	NA	936	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.220000	0.865672	
mm_168132.1	chr10	26107715	26107915	+	1	NA	NA	NA	-28763	NM_029881	77220	Mm.266260	NM_029881	ENSMUSG00000049420	Tmem200a	C030003D03Rik	transmembrane protein 200A	protein-coding	0.095000	0.592040	
mm_48066.1	chr5	136581476	136581676	-	1	NA	NA	NA	-14086	NM_001291238	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.025000	0.477612	
mm_40323.1	chr5	43901837	43902037	+	1	NA	NA	NA	33128	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.000000	0.402985	9(CCATTTAGAGGT,+,0.00)
mm_150711.1	chr19	42745710	42745910	+	1	NA	NA	NA	6965	NM_029011	74580	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	0.025000	0.567164	
mm_23032.1	chr3	34650673	34650873	+	1	NA	NA	NA	778	NM_011443	20674	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0.110000	0.651741	
mm_75500.1	chr8	52197070	52197270	-	1	NA	NA	NA	-1314532	NM_001205054	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.055000	0.457711	
mm_74193.1	chr8	123754246	123754446	+	1	NA	NA	NA	20388	NR_040702	234863	Mm.246601	NR_040702	ENSMUSG00000110599	6030466F02Rik	-	RIKEN cDNA 6030466F02 gene	ncRNA	0.050000	0.572139	
mm_113974.1	chr13	51651669	51651869	+	1	NA	NA	NA	61	NM_029279	75420	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.180000	0.756219	
mm_71150.1	chr8	39300763	39300963	+	1	NA	NA	NA	2883	NR_044988	621335	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	0.010000	0.582090	
mm_98718.1	chr11	96318737	96318937	+	1	NA	NA	NA	570	NM_010459	15412	Mm.3546	NM_010459	ENSMUSG00000038692	Hoxb4	Hox-2.6	homeobox B4	protein-coding	0.075000	0.552239	
mm_71933.1	chr8	70302487	70302687	+	1	NA	NA	NA	-135	NM_001024922	234374	Mm.388127	NM_001024922	ENSMUSG00000057788	Ddx49	R27090_2	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein-coding	0.070000	0.537313	
mm_139314.1	chr17	48351965	48352165	+	1	NA	NA	NA	5664	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.020000	0.562189	
mm_26899.1	chr3	19264915	19265115	-	1	NA	NA	NA	-7	NM_008802	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.015000	0.552239	
mm_90517.1	chr10	128052206	128052406	+	1	NA	NA	NA	-6676	NM_019766	56351	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3 (cytosolic)	protein-coding	0.005000	0.393035	
mm_31433.1	chr4	48279723	48279923	+	1	NA	NA	NA	63	NM_001281977	16348	Mm.317706	NM_010569	ENSMUSG00000028344	Invs	Nphp2|inv	inversin	protein-coding	0.065000	0.666667	
mm_146633.1	chr18	10588576	10588776	-	1	NA	NA	NA	21676	NM_001081222	77805	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	0.010000	0.348259	
mm_114432.1	chr13	65241387	65241587	+	1	NA	NA	NA	-35771	NM_175290	97895	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	0.100000	0.572139	13(CGGTTTTTAAGC,-,0.00)
mm_46003.1	chr5	90695993	90696193	-	1	NA	NA	NA	-55566	NM_001310656	73246	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.015000	0.422886	
mm_5979.1	chr1	58045175	58045375	-	1	NA	NA	NA	15306	NM_009676	11761	Mm.26787	NM_009676	ENSMUSG00000063558	Aox1	AI196512|AI255253|Ao|Aox-1|Aox-2|Aox2|Moro|Ro	aldehyde oxidase 1	protein-coding	0.005000	0.567164	-33(CACTATAAAAGG,-,0.00)
mm_155415.1	chrX	73490704	73490904	+	1	NA	NA	NA	7203	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.000000	0.522388	
mm_62976.1	chr7	120102356	120102556	+	1	NA	NA	NA	30	NM_145586	233806	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	0.050000	0.626866	
mm_145556.1	chr18	60811772	60811972	+	1	NA	NA	NA	-204	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.000000	0.552239	
mm_124803.1	chr15	8512026	8512226	+	1	NA	NA	NA	-67663	NM_201232	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.035000	0.492537	
mm_93410.1	chr10	108296471	108296671	-	1	NA	NA	NA	-35618	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.025000	0.517413	
mm_69258.1	chr7	127876478	127876678	-	1	NA	NA	NA	245	NM_146259	244219	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.100000	0.626866	89(TTCCATAAAAGC,-,0.00)
mm_163772.1	chr13	120018092	120018292	+	1	NA	NA	NA	34012	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.010000	0.338308	
mm_67117.1	chr7	70361474	70361674	-	1	NA	NA	NA	-981	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.075000	0.567164	
mm_24485.1	chr3	92113093	92113293	+	1	NA	NA	NA	10754	NM_175424	109314	Mm.440617	NM_175424	ENSMUSG00000056270	Prr9	A030004J04Rik	proline rich 9	protein-coding	0.010000	0.487562	-35(CCTTATAAATGG,+,0.00),-35(CCTTATAAATGG,-,0.00)
mm_38853.1	chr4	149385193	149385393	-	1	NA	NA	NA	41338	NM_022022	63958	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0.020000	0.497512	
mm_76329.1	chr8	84706104	84706304	-	1	NA	NA	NA	4747	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.040000	0.353234	
mm_153383.1	chr19	40376825	40377025	-	1	NA	NA	NA	25385	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.030000	0.592040	
mm_116469.1	chr13	43480988	43481188	-	1	NA	NA	NA	-115	NM_019930	56705	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.180000	0.820896	
mm_28651.1	chr3	95228775	95228975	-	1	NA	NA	NA	-68	NM_001038708	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.145000	0.786070	
mm_146795.1	chr18	20669959	20670159	-	1	NA	NA	NA	4809	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.035000	0.492537	
mm_11904.1	chr2	50335516	50335716	+	1	NA	NA	NA	38806	NR_040362	100502624	Mm.382825	NR_040361	ENSMUSG00000085862	Gm13483	OTTMUSG00000012382	predicted gene 13483	ncRNA	0.010000	0.338308	
mm_130622.1	chr15	100403291	100403491	-	1	NA	NA	NA	19664	NM_001146161	18174	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0.040000	0.507463	
mm_114772.1	chr13	88821515	88821715	+	1	NA	NA	NA	143	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.100000	0.691542	
mm_93567.1	chr10	116549220	116549420	-	1	NA	NA	NA	32191	NM_001037848	72068	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.005000	0.388060	
mm_60410.1	chr7	44476005	44476205	+	1	NA	NA	NA	5758	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.487562	
mm_96193.1	chr11	61982197	61982397	+	1	NA	NA	NA	25534	NM_001310526	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.020000	0.348259	
mm_27937.1	chr3	79591188	79591388	-	1	NA	NA	NA	-101	NM_026352	67738	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	0.075000	0.572139	
mm_16156.1	chr2	172370862	172371062	+	1	NA	NA	NA	-41	NM_024199	67337	Mm.26944	NM_024199	ENSMUSG00000027498	Cstf1	1700057K18Rik|AI788832	cleavage stimulation factor, 3' pre-RNA, subunit 1	protein-coding	0.095000	0.621891	
mm_13581.1	chr2	112377125	112377325	+	1	NA	NA	NA	-1986	NM_024254	72425	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	0.030000	0.427861	
mm_49874.1	chr6	38581886	38582086	+	1	NA	NA	NA	26263	NM_001331223	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.005000	0.353234	
mm_142428.1	chr17	45569501	45569701	-	1	NA	NA	NA	3660	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.040000	0.542289	
mm_107995.1	chr12	73336535	73336735	+	1	NA	NA	NA	49787	NM_001037717	625098	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0.000000	0.373134	
mm_106614.1	chr11	120817056	120817256	-	1	NA	NA	NA	7391	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.015000	0.527363	
mm_55191.1	chr6	52191256	52191456	-	1	NA	NA	NA	347	NM_008265	15401	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	0.155000	0.850746	
mm_79648.1	chr9	59578209	59578409	+	1	NA	NA	NA	-28	NM_175235	76183	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0.120000	0.800995	
mm_89169.1	chr10	86310935	86311135	+	1	NA	NA	NA	10623	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.015000	0.427861	-65(CTGTATTAAAGA,-,0.00)
mm_112804.1	chr13	20477532	20477732	+	1	NA	NA	NA	4642	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.000000	0.477612	
mm_152574.1	chr19	11592804	11593004	-	1	NA	NA	NA	11900	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.005000	0.398010	
mm_35382.1	chr4	33247454	33247654	-	1	NA	NA	NA	1233	NM_001033225	108767	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.100000	0.716418	
mm_110346.1	chr12	36218097	36218297	-	1	NA	NA	NA	5	NM_027699	71156	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	0.020000	0.477612	85(TCTTTAATACCC,+,0.00)
mm_45517.1	chr5	72504475	72504675	-	1	NA	NA	NA	-35	NM_001122756	53419	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.025000	0.547264	
mm_115937.1	chr13	23621897	23622097	-	1	NA	NA	NA	561	NM_015787	50709	Mm.170587	NM_015787	ENSMUSG00000051627	Hist1h1e	H1-4|H1.4|H1e|H1f4|H1s-4|H1var2	histone cluster 1, H1e	protein-coding	0.040000	0.557214	
mm_72699.1	chr8	84977782	84977982	+	1	NA	NA	NA	866	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.075000	0.701493	
mm_64752.1	chr7	4812030	4812230	-	1	NA	NA	NA	210	NM_133777	77891	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	0.095000	0.711443	
mm_145896.1	chr18	65594085	65594285	+	1	NA	NA	NA	13955	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.015000	0.467662	
mm_15484.1	chr2	157561842	157562042	+	1	NA	NA	NA	1864	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.035000	0.567164	
mm_136070.1	chr16	84735832	84736032	-	1	NA	NA	NA	-630	NM_017404	27393	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	0.020000	0.417910	
mm_98776.1	chr11	96789078	96789278	+	1	NA	NA	NA	42	NM_007622	12412	Mm.29055	NM_007622	ENSMUSG00000018666	Cbx1	Cbx|Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1	chromobox 1	protein-coding	0.115000	0.671642	
mm_152710.1	chr19	17372743	17372943	-	1	NA	NA	NA	1	NM_010265	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.005000	0.452736	
mm_16195.1	chr2	172992618	172992818	+	1	NA	NA	NA	-7399	NM_175112	66679	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	0.005000	0.427861	
mm_68844.1	chr7	126364800	126365000	-	1	NA	NA	NA	3145	NR_106025	102466797		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.000000	0.552239	
mm_72949.1	chr8	92355886	92356086	+	1	NA	NA	NA	134	NR_110452	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	0.145000	0.751244	
mm_49378.1	chr6	24597666	24597866	+	1	NA	NA	NA	-5	NM_053098	93677	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	0.035000	0.582090	-30(CGCTCTTAAAAG,-,0.00),-29(GCTCTTAAAAGG,-,0.00)
mm_29800.1	chr3	127780169	127780369	-	1	NA	NA	NA	258	NM_027808	71481	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	0.055000	0.522388	
mm_130788.1	chr15	101675994	101676194	-	1	NA	NA	NA	4195	NM_010669	16688	Mm.441891	NM_010669	ENSMUSG00000023041	Krt6b	BB144589|Krt2-6b|mK6[b]	keratin 6B	protein-coding	0.000000	0.363184	
mm_30114.1	chr3	139075053	139075253	-	1	NA	NA	NA	48	NM_145544	229877	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.175000	0.840796	
mm_57233.1	chr6	123282762	123282962	-	1	NA	NA	NA	7009	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.005000	0.373134	
mm_73004.1	chr8	93810738	93810938	+	1	NA	NA	NA	0	NM_010308	14681	Mm.251445	NM_010308	ENSMUSG00000031748	Gnao1	AW050213|Galphao|Gnao|alphaO	guanine nucleotide binding protein, alpha O	protein-coding	0.125000	0.756219	
mm_38208.1	chr4	135873727	135873927	-	1	NA	NA	NA	19	NM_026383	52830	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.095000	0.616915	
mm_128907.1	chr15	73423133	73423333	-	1	NA	NA	NA	-42	NM_001130409	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.160000	0.751244	
mm_4997.1	chr1	191906655	191906855	+	1	NA	NA	NA	-26	NM_009579	22782	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	0.130000	0.691542	
mm_29554.1	chr3	116807785	116807985	-	1	NA	NA	NA	281	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.040000	0.577114	
mm_46767.1	chr5	112269401	112269601	-	1	NA	NA	NA	-7190	NM_001326590	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.060000	0.626866	-77(GGCTATAAGAAC,-,0.00)
mm_153622.1	chr19	43986457	43986657	-	1	NA	NA	NA	-37	NM_030703	93721	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	0.020000	0.487562	-83(CTCTCTTAAAAG,-,0.00),-81(CTCTTAAAAGCC,+,0.00)
mm_38867.1	chr4	149485113	149485313	-	1	NA	NA	NA	-71	NM_133435	66454	Mm.76062	NM_133435	ENSMUSG00000028992	Nmnat1	2610529L11Rik|5730441G13Rik|D4Cole1e|nmnat	nicotinamide nucleotide adenylyltransferase 1	protein-coding	0.085000	0.676617	
mm_23660.1	chr3	68282164	68282364	+	1	NA	NA	NA	-185919	NM_001282045	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.000000	0.303483	
mm_164713.1	chr17	55888083	55888283	+	1	NA	NA	NA	-3910	NM_145490	224893	Mm.294853	NM_145490	ENSMUSG00000003198	Zfp959	-	zinc finger protein 959	protein-coding	0.035000	0.527363	-31(GAGTATATAAGA,-,0.00)
mm_136942.1	chr17	14279410	14279610	+	1	NA	NA	NA	4	NM_022315	64074	Mm.30162	NM_022315	ENSMUSG00000023886	Smoc2	1700056C05Rik|5430426J21Rik|Smoc2l	SPARC related modular calcium binding 2	protein-coding	0.115000	0.731343	
mm_8172.1	chr1	137806706	137806906	-	1	NA	NA	NA	-159649	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.030000	0.462687	46(ATGCTTAAAAGC,-,0.00)
mm_46788.1	chr5	112765828	112766028	-	1	NA	NA	NA	-27364	NR_040675	67360	Mm.59218	NR_040675	ENSMUSG00000098230	1700095B10Rik	-	RIKEN cDNA 1700095B10 gene	ncRNA	0.005000	0.537313	
mm_30562.1	chr4	3789897	3790097	+	1	NA	NA	NA	45658	NM_026147	67427	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.010000	0.487562	
mm_74560.1	chr8	10947758	10947958	-	1	NA	NA	NA	-19401	NR_135302	665306	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0.005000	0.437811	
mm_79595.1	chr9	58455005	58455205	+	1	NA	NA	NA	-68	NR_040736	74879	Mm.416924	NR_040736	ENSMUSG00000097651	4930461G14Rik	-	RIKEN cDNA 4930461G14 gene	ncRNA	0.010000	0.532338	
mm_156449.1	chrX	142694755	142694955	+	1	NA	NA	NA	13129	NM_001199360	209497	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	0.010000	0.393035	
mm_97491.1	chr11	78337720	78337920	+	1	NA	NA	NA	-5675	NM_001313985	22248	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.035000	0.587065	
mm_57118.1	chr6	122596627	122596827	-	1	NA	NA	NA	5717	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.020000	0.517413	
mm_41301.1	chr5	90465804	90466004	+	1	NA	NA	NA	5034	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.368159	53(AGCTTTTAAAGC,-,0.00),54(GCTTTTAAAGCA,+,0.00)
mm_96589.1	chr11	69090577	69090777	+	1	NA	NA	NA	2149	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.020000	0.582090	
mm_63986.1	chr7	140093295	140093495	+	1	NA	NA	NA	-1	NM_009475	22264	Mm.439707	NM_009475	ENSMUSG00000025467	Prap1	Upa	proline-rich acidic protein 1	protein-coding	0.020000	0.567164	
mm_106304.1	chr11	118290071	118290271	-	1	NA	NA	NA	73	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.110000	0.656716	-72(GCCTCTTAAGGC,-,0.00),-71(CCTCTTAAGGCG,+,0.00)
mm_125366.1	chr15	39659449	39659649	+	1	NA	NA	NA	38	NM_001256384	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.045000	0.651741	
mm_158738.1	chrX	164076354	164076554	-	1	NA	NA	NA	39	NM_001308385	20438	Mm.37215	NM_009173	ENSMUSG00000040749	Siah1b	AA960570|Sinh1b|siah-1b	seven in absentia 1B	protein-coding	0.070000	0.592040	
mm_8500.1	chr1	153900104	153900304	-	1	NA	NA	NA	275	NM_008131	14645	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.100000	0.666667	
mm_97513.1	chr11	78499440	78499640	+	1	NA	NA	NA	420	NM_011707	22370	Mm.3667	NM_011707	ENSMUSG00000017344	Vtn	AI256434|Vn	vitronectin	protein-coding	0.015000	0.552239	
mm_131616.1	chr16	19760311	19760511	+	1	NA	NA	NA	177	NM_001159407	108105	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	0.035000	0.527363	41(GGACATTTAAGG,-,0.00)
mm_83368.1	chr9	44454636	44454836	-	1	NA	NA	NA	31	NM_009476	22269	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	0.015000	0.606965	
mm_137533.1	chr17	27555725	27555925	+	1	NA	NA	NA	-749	NM_001166536	15361	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0.085000	0.696517	
mm_17566.1	chr2	30205682	30205882	-	1	NA	NA	NA	-83	NM_172404	70266	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	0.045000	0.542289	-33(GTCTTTAAAGGG,+,0.00),-33(GTCTTTAAAGGG,-,0.00),-32(TCTTTAAAGGGC,+,0.00),58(GCCTCTTTAAAG,-,0.00),59(CCTCTTTAAAGG,-,0.00),60(CTCTTTAAAGGA,+,0.00),60(CTCTTTAAAGGA,-,0.00)
mm_130009.1	chr15	86574353	86574553	-	1	NA	NA	NA	359994	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.015000	0.552239	
mm_157251.1	chrX	19150557	19150757	-	1	NA	NA	NA	-3686	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.010000	0.353234	-46(GTATTTAAAAGG,-,0.00)
mm_12485.1	chr2	71530643	71530843	+	1	NA	NA	NA	1298	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.045000	0.457711	
mm_71852.1	chr8	68905995	68906195	+	1	NA	NA	NA	25540	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.353234	
mm_37550.1	chr4	125346856	125347056	-	1	NA	NA	NA	-143875	NM_001081097	14807	Mm.40896	NM_001081097	ENSMUSG00000001985	Grik3	9630027E11|GluK3|GluR7-3|Glur-7|Glur7	glutamate receptor, ionotropic, kainate 3	protein-coding	0.010000	0.467662	
mm_96117.1	chr11	60706652	60706852	+	1	NA	NA	NA	7062	NM_008502	16897	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	lethal giant larvae homolog 1 (Drosophila)	protein-coding	0.020000	0.631841	
mm_8073.1	chr1	135564455	135564655	-	1	NA	NA	NA	20800	NM_173437	215690	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.005000	0.437811	
mm_81062.1	chr9	106170836	106171036	+	1	NA	NA	NA	7	NM_029896	77305	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	0.115000	0.681592	
mm_164099.1	chr15	15236817	15237017	+	1	NA	NA	NA	-1541184	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.000000	0.303483	
mm_124614.1	chr15	3279464	3279664	+	1	NA	NA	NA	8587	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.020000	0.532338	
mm_163923.1	chr14	45275984	45276184	+	1	NA	NA	NA	42488	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.020000	0.492537	
mm_95464.1	chr11	50430307	50430507	+	1	NA	NA	NA	704	NM_172557	216724	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	0.045000	0.557214	
mm_85985.1	chr9	112185833	112186033	-	1	NA	NA	NA	16	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.040000	0.562189	
mm_1815.1	chr1	82316551	82316751	+	1	NA	NA	NA	72	NM_029777	76867	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	0.125000	0.636816	
mm_32557.1	chr4	109440165	109440365	+	1	NA	NA	NA	24618	NM_001145948	230603	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.005000	0.482587	78(ACTTTTAGAGTC,+,0.00)
mm_128334.1	chr15	38455064	38455264	-	1	NA	NA	NA	35383	NR_105916	102465574		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.015000	0.522388	
mm_101893.1	chr11	49081385	49081585	-	1	NA	NA	NA	4898	NM_001271677	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.015000	0.472637	
mm_44681.1	chr5	30105990	30106190	-	1	NA	NA	NA	-4	NM_001256263	433868	Mm.450696	NM_001256263	ENSMUSG00000086815	3110082J24Rik	ENSMUSG00000073106	RIKEN cDNA 3110082J24 gene	protein-coding	0.040000	0.621891	
mm_145635.1	chr18	61112606	61112806	+	1	NA	NA	NA	-4762	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.020000	0.407960	-86(TCGTTTTAAAGG,-,0.00)
mm_166205.1	chr5	43910290	43910490	+	1	NA	NA	NA	41581	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.010000	0.467662	
mm_82893.1	chr9	32542897	32543097	-	1	NA	NA	NA	-1545	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.030000	0.601990	
mm_78116.1	chr9	20643216	20643416	+	1	NA	NA	NA	-2	NM_025401	66177	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.065000	0.606965	
mm_69471.1	chr7	133708984	133709184	-	1	NA	NA	NA	211	NM_009479	22276	Mm.3160	NM_009479	ENSMUSG00000030979	Uros	AI415298|UROIIIS|Uros3	uroporphyrinogen III synthase	protein-coding	0.060000	0.611940	
mm_129945.1	chr15	84948991	84949191	-	1	NA	NA	NA	2532	NR_037206	100526461		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0.050000	0.656716	
mm_149706.1	chr19	21652776	21652976	+	1	NA	NA	NA	-85	NM_025423	66206	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0.065000	0.587065	
mm_6887.1	chr1	84695782	84695982	-	1	NA	NA	NA	43	NR_039588	100628595		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0.115000	0.756219	
mm_42094.1	chr5	110330662	110330862	+	1	NA	NA	NA	12273	NM_153400	231602	Mm.55948	NM_153400	ENSMUSG00000029503	P2rx2	P2X2a|P2x2	purinergic receptor P2X, ligand-gated ion channel, 2	protein-coding	0.005000	0.442786	
mm_32064.1	chr4	97777755	97777955	+	1	NA	NA	NA	229	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.065000	0.606965	
mm_24910.1	chr3	96221062	96221262	+	1	NA	NA	NA	90	NM_178214	319190	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	0.030000	0.482587	
mm_149665.1	chr19	18749634	18749834	+	1	NA	NA	NA	-249	NM_153417	225997	Mm.215171	NM_153417	ENSMUSG00000024727	Trpm6	CHAK2|TRPM6/CHAK2	transient receptor potential cation channel, subfamily M, member 6	protein-coding	0.055000	0.567164	
mm_68322.1	chr7	106502959	106503159	-	1	NA	NA	NA	-61986	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.005000	0.407960	
mm_22430.1	chr2	181599173	181599373	-	1	NA	NA	NA	-126	NM_172676	229011	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	0.100000	0.691542	
mm_21627.1	chr2	164277118	164277318	-	1	NA	NA	NA	1089	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.015000	0.432836	
mm_140685.1	chr17	13008276	13008476	-	1	NA	NA	NA	537	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.085000	0.606965	
mm_14065.1	chr2	122704157	122704357	+	1	NA	NA	NA	-1594	NM_001290993	22785	Mm.27801	NM_011774	ENSMUSG00000005802	Slc30a4	Znt4|lm|znT-4	solute carrier family 30 (zinc transporter), member 4	protein-coding	0.005000	0.487562	-72(GGTCATAAAAGG,-,0.00)
mm_171574.1	chr4	147361599	147361799	+	1	NA	NA	NA	185833	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.005000	0.388060	
mm_92128.1	chr10	64090102	64090302	-	1	NA	NA	NA	53	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.060000	0.587065	
mm_97188.1	chr11	75572627	75572827	+	1	NA	NA	NA	-15352	NM_008850	18738	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.015000	0.557214	
mm_47467.1	chr5	123671021	123671221	-	1	NA	NA	NA	13240	NM_019765	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.030000	0.537313	
mm_150149.1	chr19	31949687	31949887	+	1	NA	NA	NA	81026	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.010000	0.388060	
mm_52952.1	chr6	123049873	123050073	+	1	NA	NA	NA	11	NM_001190310	69810	Mm.333374	NM_027218	ENSMUSG00000030147	Clec4b1	1810046I24Rik|Aplra2|Clec4b|DCAR|DCARbeta|Dcar2	C-type lectin domain family 4, member b1	protein-coding	0.000000	0.398010	
mm_55916.1	chr6	83775653	83775853	-	1	NA	NA	NA	59	NM_009357	21766	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	0.130000	0.746269	
mm_45389.1	chr5	66147473	66147673	-	1	NA	NA	NA	3405	NM_001291226	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.005000	0.442786	
mm_136587.1	chr17	4994614	4994814	+	1	NA	NA	NA	-360	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.200000	0.855721	
mm_20889.1	chr2	148871901	148872101	-	1	NA	NA	NA	3511	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.005000	0.472637	
mm_90895.1	chr10	10472299	10472499	-	1	NA	NA	NA	-85	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.055000	0.651741	
mm_28422.1	chr3	90433511	90433711	-	1	NA	NA	NA	25	NM_145540	229543	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	0.105000	0.636816	
mm_142457.1	chr17	45595632	45595832	-	1	NA	NA	NA	-160	NM_001199116	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.080000	0.676617	
mm_35554.1	chr4	41517232	41517432	-	1	NA	NA	NA	1	NM_001048005	73721	Mm.45614	NM_028624	ENSMUSG00000028441	1110017D15Rik	Cbe1|Smrp1	RIKEN cDNA 1110017D15 gene	protein-coding	0.005000	0.542289	84(GGCTATTTAGGG,-,0.00)
mm_11972.1	chr2	54854127	54854327	+	1	NA	NA	NA	417840	NM_173030	271786	Mm.330227	NM_173030	ENSMUSG00000060988	Galnt13	A230002A12|A230020F20|BB182356	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	protein-coding	0.000000	0.253731	-90(GCTTTAAAACTG,+,0.00),-67(CTATTTATACCC,+,0.00)
mm_69373.1	chr7	130867278	130867478	-	1	NA	NA	NA	1468	NM_133942	101476	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.005000	0.452736	
mm_65156.1	chr7	19635709	19635909	-	1	NA	NA	NA	-6371	NM_009046	19698	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.025000	0.527363	
mm_69589.1	chr7	135705653	135705853	-	1	NA	NA	NA	10626	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.015000	0.407960	
mm_116839.1	chr13	54688098	54688298	-	1	NA	NA	NA	2	NM_001146027	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.060000	0.567164	-26(CTGTTTAAAGGC,-,0.00)
mm_117664.1	chr13	93499593	93499793	-	1	NA	NA	NA	115	NM_021310	57748	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	0.120000	0.691542	
mm_83675.1	chr9	50124239	50124439	-	1	NA	NA	NA	108843	NR_131161	71873		NR_131161	ENSMUSG00000110916	2310003N18Rik	-	RIKEN cDNA 2310003N18 gene	ncRNA	0.015000	0.497512	-34(GAGTAGAAAAGG,-,0.00)
mm_137599.1	chr17	28177323	28177523	+	1	NA	NA	NA	5	NM_172617	224656	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	0.150000	0.776119	
mm_130129.1	chr15	90316345	90316545	-	1	NA	NA	NA	92085	NR_106106	102466838		NR_106106	ENSMUSG00000099319	Mir7648	Gm27736|mmu-mir-7648	microRNA 7648	ncRNA	0.000000	0.323383	
mm_66775.1	chr7	46855525	46855725	-	1	NA	NA	NA	-5638	NM_013580	16833	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	0.005000	0.442786	
mm_30430.1	chr3	153151981	153152181	-	1	NA	NA	NA	27	NR_108044	75001		NR_108044		4930482G09Rik	-	RIKEN cDNA 4930482G09 gene	ncRNA	0.025000	0.417910	
mm_22877.1	chr3	29260901	29261101	+	1	NA	NA	NA	-155822	NR_030422	791072		NR_030422	ENSMUSG00000076120	Mir551b	Mirn551b|mir-551b	microRNA 551b	ncRNA	0.010000	0.328358	
mm_164875.1	chr18	57911908	57912108	+	1	NA	NA	NA	33330	NM_009194	20496	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0.010000	0.338308	
mm_130257.1	chr15	96642229	96642429	-	1	NA	NA	NA	14	NM_001166456	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.045000	0.646766	
mm_102475.1	chr11	60036789	60036989	-	1	NA	NA	NA	116	NM_008819	18618	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	0.005000	0.517413	
mm_133484.1	chr16	90220479	90220679	+	1	NA	NA	NA	-163	NM_011434	20655	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.140000	0.711443	
mm_99164.1	chr11	100626811	100627011	+	1	NA	NA	NA	3956	NM_028024	71966	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0.020000	0.532338	
mm_32709.1	chr4	116150434	116150634	+	1	NA	NA	NA	16	NM_026651	68273	Mm.196045	NM_026651	ENSMUSG00000028700	Pomgnt1	0610016I07Rik|4930467B06Rik	protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase	protein-coding	0.185000	0.855721	
mm_111940.1	chr12	108893434	108893634	-	1	NA	NA	NA	-323	NM_011710	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.035000	0.557214	
mm_57431.1	chr6	124914128	124914328	-	1	NA	NA	NA	-2523	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.025000	0.606965	
mm_87980.1	chr10	63820950	63821150	+	1	NA	NA	NA	-5	NM_001164519	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.005000	0.482587	
mm_16643.1	chr2	6129984	6130184	-	1	NA	NA	NA	101	NM_144883	227545	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0.130000	0.736318	
mm_142808.1	chr17	50993583	50993783	-	1	NA	NA	NA	165695	NM_001285993	72238	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.000000	0.417910	
mm_11251.1	chr2	29890765	29890965	+	1	NA	NA	NA	802	NM_013615	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.030000	0.597015	
mm_136792.1	chr17	12044614	12044814	+	1	NA	NA	NA	-74570	NM_026644	68262	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.040000	0.532338	
mm_111190.1	chr12	84175549	84175749	-	1	NA	NA	NA	18366	NM_001163502	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.025000	0.567164	
mm_9310.1	chr1	171641062	171641262	-	1	NA	NA	NA	738	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.020000	0.422886	
mm_32647.1	chr4	115059430	115059630	+	1	NA	NA	NA	1719	NM_001287388	21349	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.060000	0.616915	
mm_62719.1	chr7	110772707	110772907	+	1	NA	NA	NA	203	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.010000	0.502488	
mm_141461.1	chr17	30576102	30576302	-	1	NA	NA	NA	85	NM_172618	224671	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0.170000	0.751244	
mm_70778.1	chr8	22227206	22227406	+	1	NA	NA	NA	3	NM_001293688	56229	Mm.32067	NM_019576	ENSMUSG00000031480	Thsd1	4833423O18Rik|Tmtsp	thrombospondin, type I, domain 1	protein-coding	0.095000	0.731343	
mm_53124.1	chr6	125129768	125129968	+	1	NA	NA	NA	-2015	NM_138747	110109	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	0.040000	0.562189	
mm_82546.1	chr9	20898512	20898712	-	1	NA	NA	NA	-22	NM_016876	53356	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0.105000	0.666667	
mm_93237.1	chr10	95415107	95415307	-	1	NA	NA	NA	76	NM_001168657	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.045000	0.552239	
mm_171521.1	chr4	146604006	146604206	+	1	NA	NA	NA	-57233	NR_045468	67524	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	0.095000	0.771144	
mm_106605.1	chr11	120784071	120784271	-	1	NA	NA	NA	33	NM_009053	19719	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.145000	0.756219	-53(CACTCTTAAAGG,-,0.00),-50(TCTTAAAGGGGC,+,0.00)
mm_102160.1	chr11	53763587	53763787	-	1	NA	NA	NA	-33	NR_106131	102465772		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.045000	0.646766	
mm_22897.1	chr3	30793227	30793427	+	1	NA	NA	NA	451	NM_027016	69276	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	0.150000	0.736318	
mm_95449.1	chr11	50298075	50298275	+	1	NA	NA	NA	-5839	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.005000	0.437811	
mm_163770.1	chr13	120018052	120018252	+	1	NA	NA	NA	34052	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.010000	0.363184	
mm_35503.1	chr4	41064311	41064511	-	1	NA	NA	NA	-16275	NM_007473	11832	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	0.035000	0.542289	
mm_134046.1	chr16	5203899	5204099	-	1	NA	NA	NA	13	NM_013796	27426	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	0.070000	0.616915	
mm_23982.1	chr3	86040451	86040651	+	1	NA	NA	NA	-38060	NM_001001650	368202	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding	0.000000	0.348259	
mm_68621.1	chr7	117486451	117486651	-	1	NA	NA	NA	105572	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.015000	0.432836	
mm_123461.1	chr14	65833797	65833997	-	1	NA	NA	NA	72	NM_028039	71988	Mm.249280	NM_028039	ENSMUSG00000022034	Esco2	2410004I17Rik|D030072L07Rik	establishment of sister chromatid cohesion N-acetyltransferase 2	protein-coding	0.090000	0.597015	
mm_63769.1	chr7	131303604	131303804	+	1	NA	NA	NA	18588	NM_008411	16433	Mm.142717	NM_008411	ENSMUSG00000040205	Cuzd1	Erg-1|Itmap1|Uo-44|Usg|Utczp	CUB and zona pellucida-like domains 1	protein-coding	0.015000	0.497512	
mm_47575.1	chr5	124531113	124531313	-	1	NA	NA	NA	178	NM_021430	75695	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0.110000	0.691542	
mm_145153.1	chr18	46473972	46474172	+	1	NA	NA	NA	-8256	NR_045438	72076	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.025000	0.427861	
mm_70043.1	chr7	142577814	142578014	-	1	NA	NA	NA	232	NR_130974	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.035000	0.577114	
mm_80215.1	chr9	72531842	72532042	+	1	NA	NA	NA	-84	NR_045735	75115	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	0.100000	0.661692	
mm_161711.1	chr17	25136535	25136735	+	1	NA	NA	NA	4	NM_001317404	26373	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.010000	0.512438	43(GTCTTTAAATGC,-,0.00)
mm_118681.1	chr14	22100658	22100858	+	1	NA	NA	NA	81046	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.402985	
mm_139866.1	chr17	70522014	70522214	+	1	NA	NA	NA	4	NM_001128180	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.040000	0.512438	81(ACCTTTTTAAGG,-,0.00),83(CTTTTTAAGGCT,+,0.00)
mm_102752.1	chr11	67278940	67279140	-	1	NA	NA	NA	1916	NM_177369	17885	Mm.340163	NM_177369	ENSMUSG00000055775	Myh8	4832426G23Rik|AI327267|MHCp|MyHC-pn|Myhs-p|Myhsp	myosin, heavy polypeptide 8, skeletal muscle, perinatal	protein-coding	0.025000	0.477612	
mm_114028.1	chr13	52641052	52641252	+	1	NA	NA	NA	44270	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.010000	0.348259	
mm_16832.1	chr2	11493854	11494054	-	1	NA	NA	NA	8136	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.025000	0.542289	
mm_58843.1	chr7	16842860	16843060	+	1	NA	NA	NA	58	NM_001252458	101540	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.080000	0.641791	
mm_17620.1	chr2	30967792	30967992	-	1	NA	NA	NA	26	NM_144884	30931	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0.130000	0.721393	
mm_151794.1	chr19	5406504	5406704	-	1	NA	NA	NA	-211	NR_015545	74931	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	0.085000	0.592040	-25(CTCCTTAAAGGG,-,0.00),-23(CCTTAAAGGGGA,+,0.00)
mm_113411.1	chr13	33979592	33979792	+	1	NA	NA	NA	12539	NM_001163242	18105	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	NAD(P)H dehydrogenase, quinone 2	protein-coding	0.000000	0.323383	
mm_96671.1	chr11	69410860	69411060	+	1	NA	NA	NA	2715	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.095000	0.681592	
mm_50209.1	chr6	42261882	42262082	+	1	NA	NA	NA	12	NM_175408	109218	Mm.480678	NM_175408	ENSMUSG00000071506	Tmem139	A930027H06Rik	transmembrane protein 139	protein-coding	0.050000	0.616915	
mm_43232.1	chr5	129941821	129942021	+	1	NA	NA	NA	-188	NM_001001327	69568	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	0.120000	0.751244	
mm_78147.1	chr9	21002821	21003021	+	1	NA	NA	NA	184	NM_023167	66163	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0.135000	0.681592	
mm_108562.1	chr12	84760656	84760856	+	1	NA	NA	NA	12356	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.030000	0.567164	
mm_147326.1	chr18	42275028	42275228	-	1	NA	NA	NA	69	NR_033452	100042757	Mm.100172	NR_033452		Gm4013	-	predicted gene 4013	ncRNA	0.050000	0.597015	-18(GTCTCTTAAAGG,-,0.00),-17(TCTCTTAAAGGG,+,0.00)
mm_71889.1	chr8	69832410	69832610	+	1	NA	NA	NA	-194	NM_001024954	80720	Mm.210823	NM_030555	ENSMUSG00000031860	Pbx4	2410015M21Rik|AI429113|AW045266	pre B cell leukemia homeobox 4	protein-coding	0.050000	0.557214	
mm_152494.1	chr19	11080940	11081140	-	1	NA	NA	NA	63	NM_022430	64381	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	0.020000	0.467662	
mm_159258.1	chr2	154307127	154307327	+	1	NA	NA	NA	-17	NM_001025574	433492	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838|OTTMUSG00000015915	BPI fold containing family B, member 9B	protein-coding	0.005000	0.517413	-57(GACCTTTAAAGG,-,0.00),-56(ACCTTTAAAGGA,-,0.00),-55(CCTTTAAAGGAG,+,0.00),-33(GGCTATAAAAGG,-,0.00)
mm_85942.1	chr9	112099363	112099563	-	1	NA	NA	NA	19248	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.010000	0.512438	
mm_9247.1	chr1	171360646	171360846	-	1	NA	NA	NA	52	NM_001033039	68874	Mm.10756	NM_001033039	ENSMUSG00000045259	Klhdc9	1190002J23Rik|AA087357|ESTM31	kelch domain containing 9	protein-coding	0.045000	0.606965	
mm_139043.1	chr17	46227770	46227970	+	1	NA	NA	NA	-3661	NR_030466	751553		NR_030466	ENSMUSG00000076141	Mir693	Mirn693|mir-693|mmu-mir-693	microRNA 693	ncRNA	0.025000	0.507463	
mm_92499.1	chr10	78351966	78352166	-	1	NA	NA	NA	-366	NM_053014	28169	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.165000	0.830846	
mm_96945.1	chr11	70540771	70540971	+	1	NA	NA	NA	599	NM_001302476	18806	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	0.015000	0.547264	
mm_31602.1	chr4	57956524	57956724	+	1	NA	NA	NA	-213	NM_011660	22166	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.060000	0.597015	-61(TAGTTTATAAGG,-,0.00),-59(GTTTATAAGGGG,+,0.00)
mm_127760.1	chr15	103515021	103515221	+	1	NA	NA	NA	144	NM_001285890	18574	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.010000	0.527363	
mm_171658.1	chr4	43000336	43000536	-	1	NA	NA	NA	71	NM_009503	269523	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	0.105000	0.646766	
mm_30809.1	chr4	20042018	20042218	+	1	NA	NA	NA	66	NM_010281	14590	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0.115000	0.681592	
mm_14731.1	chr2	144270547	144270747	+	1	NA	NA	NA	-75	NM_024225	69178	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	0.140000	0.771144	
mm_92572.1	chr10	79910240	79910440	-	1	NA	NA	NA	-1402	NM_198107	216154	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|Thrap5|Trap95	mediator complex subunit 16	protein-coding	0.010000	0.502488	
mm_70703.1	chr8	15057055	15057255	+	1	NA	NA	NA	-498	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.010000	0.482587	66(GTTTTTAAACCA,+,0.00)
mm_131459.1	chr16	16983323	16983523	+	1	NA	NA	NA	41	NM_001038663	26413	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	0.100000	0.641791	
mm_134743.1	chr16	23029310	23029510	-	1	NA	NA	NA	-309	NM_001102410	385643	Mm.440414	NM_201375	ENSMUSG00000060459	Kng2	-	kininogen 2	protein-coding	0.010000	0.482587	
mm_63420.1	chr7	127471262	127471462	+	1	NA	NA	NA	-252	NM_145589	233895	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.040000	0.537313	
mm_74828.1	chr8	23190953	23191153	-	1	NA	NA	NA	17400	NM_018743	102247	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	0.015000	0.547264	
mm_24321.1	chr3	89432383	89432583	+	1	NA	NA	NA	1463	NM_001293766	68911	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	0.045000	0.577114	
mm_137198.1	chr17	23867798	23867998	+	1	NA	NA	NA	-174	NM_020487	57256	Mm.386785	NM_020487	ENSMUSG00000024116	Prss21	1700023E12Rik|TESP5|mT4|testisin	protease, serine 21	protein-coding	0.020000	0.557214	
mm_75570.1	chr8	60941309	60941509	-	1	NA	NA	NA	13390	NM_173876	12725	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0.010000	0.383085	25(GCATTAATAGCT,+,0.00)
mm_115614.1	chr13	12051123	12051323	-	1	NA	NA	NA	55722	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.005000	0.477612	-3(GGCTATATATAG,-,0.00)
mm_162939.1	chr10	127878229	127878429	-	1	NA	NA	NA	10370	NM_017473	54150	Mm.6696	NM_017473	ENSMUSG00000040134	Rdh7	AI194929|CRAD2	retinol dehydrogenase 7	protein-coding	0.005000	0.497512	
mm_23802.1	chr3	79884434	79884634	+	1	NA	NA	NA	-1396	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.015000	0.497512	
mm_3075.1	chr1	134289873	134290073	+	1	NA	NA	NA	-31	NM_031189	17928	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	0.020000	0.547264	0(GGGTTTAAATGG,-,0.00)
mm_103112.1	chr11	69981187	69981387	-	1	NA	NA	NA	-52	NM_018740	54351	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.080000	0.691542	
mm_73978.1	chr8	120537278	120537478	+	1	NA	NA	NA	-31	NM_001145896	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.135000	0.761194	
mm_117522.1	chr13	81570562	81570762	-	1	NA	NA	NA	62482	NM_054053	110789	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.020000	0.502488	
mm_10831.1	chr2	24386516	24386716	+	1	NA	NA	NA	1219	NM_177611	215632	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.060000	0.582090	
mm_45051.1	chr5	41764394	41764594	-	1	NA	NA	NA	-274	NM_007524	12020	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0.040000	0.601990	
mm_104892.1	chr11	99580917	99581117	-	1	NA	NA	NA	-1	NM_027157	69664	Mm.38303	NM_027157	ENSMUSG00000047253	Krtap1-5	2310043L02Rik|AI592983	keratin associated protein 1-5	protein-coding	0.000000	0.407960	-35(GACTATATAAAA,-,0.00),-33(CTATATAAAAGG,-,0.00)
mm_48049.1	chr5	136471821	136472021	-	1	NA	NA	NA	94060	NM_001291239	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.015000	0.407960	
mm_28205.1	chr3	88296832	88297032	-	1	NA	NA	NA	-94	NM_029801	76927	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	0.070000	0.611940	
mm_171838.1	chr5	149052917	149053117	-	1	NA	NA	NA	40	NM_010439	15289	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.075000	0.626866	
mm_39978.1	chr5	32353539	32353739	+	1	NA	NA	NA	59	NM_172147	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0.010000	0.492537	
mm_162207.1	chrX	135840516	135840716	+	1	NA	NA	NA	1582	NM_001163017	245607	Mm.489763	NM_001163015	ENSMUSG00000072966	Gprasp2	5330440H13Rik|GASP-2|GASP2|Prpl5	G protein-coupled receptor associated sorting protein 2	protein-coding	0.005000	0.492537	
mm_157373.1	chrX	37878427	37878627	-	1	NA	NA	NA	417	NM_001004193	434768	Mm.336025	NM_001004193	ENSMUSG00000064137	Rhox8	Tox	reproductive homeobox 8	protein-coding	0.015000	0.492537	
mm_84732.1	chr9	75071033	75071233	-	1	NA	NA	NA	-73	NM_010864	17918	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	0.135000	0.741294	
mm_167711.1	chr9	96899733	96899933	-	1	NA	NA	NA	-10359	NM_001289645	235534	Mm.233031	NM_153420	ENSMUSG00000043587	Pxylp1	9430094M07Rik|Acpl2|BB177120|C130099A20Rik	2-phosphoxylose phosphatase 1	protein-coding	0.020000	0.512438	
mm_14053.1	chr2	122426347	122426547	+	1	NA	NA	NA	-30	NM_172980	269346	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	0.015000	0.522388	-90(CTACATAAAAGG,-,0.00)
mm_115807.1	chr13	19358470	19358670	-	1	NA	NA	NA	37243	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.020000	0.577114	
mm_77112.1	chr8	111081763	111081963	-	1	NA	NA	NA	-155	NM_181549	353287	Mm.135495	NM_181549	ENSMUSG00000033633	Clec18a	Mrcl	C-type lectin domain family 18, member A	protein-coding	0.015000	0.542289	
mm_61301.1	chr7	67950128	67950328	+	1	NA	NA	NA	-2029	NM_010513	16001	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.010000	0.318408	-35(GCATATAAATGC,-,0.00),63(CTGTTTATAAGA,-,0.00)
mm_18263.1	chr2	52307618	52307818	-	1	NA	NA	NA	16716	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.010000	0.452736	
mm_136466.1	chr16	95459233	95459433	-	1	NA	NA	NA	15	NM_001302154	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	0.015000	0.402985	
mm_125568.1	chr15	59302531	59302731	+	1	NA	NA	NA	-4317	NR_045613	100416830	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0.010000	0.522388	
mm_111358.1	chr12	86990428	86990628	-	1	NA	NA	NA	-1852	NM_001080943	238331	Mm.185890	NM_001080943	ENSMUSG00000048483	Zdhhc22	Gm262	zinc finger, DHHC-type containing 22	protein-coding	0.065000	0.711443	
mm_11271.1	chr2	30061763	30061963	+	1	NA	NA	NA	-133	NM_023871	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.070000	0.671642	
mm_134070.1	chr16	8666392	8666592	-	1	NA	NA	NA	5661	NM_025821	52502	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.000000	0.577114	
mm_124746.1	chr15	6619514	6619714	+	1	NA	NA	NA	39767	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.025000	0.512438	
mm_172452.1	chr7	33099651	33099851	-	1	NA	NA	NA	-43199	NM_001281523	624439	Mm.326965	NM_001281523	ENSMUSG00000097972	Scgb2b15	Abpb15|EG624439|Gm6504	secretoglobin, family 2B, member 15	protein-coding	0.035000	0.532338	
mm_152358.1	chr19	10065611	10065811	-	1	NA	NA	NA	24163	NM_021890	60527	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0.005000	0.522388	
mm_90785.1	chr10	7054795	7054995	-	1	NA	NA	NA	-31710	NM_001033391	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.010000	0.487562	
mm_105049.1	chr11	100619580	100619780	-	1	NA	NA	NA	488	NM_019795	56354	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0.115000	0.701493	
mm_65558.1	chr7	27166347	27166547	-	1	NA	NA	NA	355	NM_053208	112406	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0.115000	0.756219	
mm_116908.1	chr13	55476101	55476301	-	1	NA	NA	NA	1575	NR_105909	102465569		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0.030000	0.611940	
mm_46288.1	chr5	100237403	100237603	-	1	NA	NA	NA	26811	NR_040679	69571	Mm.396412	NR_040679	ENSMUSG00000100157	2310034O05Rik	-	RIKEN cDNA 2310034O05 gene	ncRNA	0.040000	0.457711	
mm_45511.1	chr5	72504163	72504363	-	1	NA	NA	NA	-55	NM_016869	53419	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.050000	0.606965	
mm_155680.1	chrX	93286411	93286611	+	1	NA	NA	NA	4	NM_001305940	11878	Mm.275547	NM_007492	ENSMUSG00000035277	Arx	-	aristaless related homeobox	protein-coding	0.090000	0.651741	
mm_33976.1	chr4	137664647	137664847	+	1	NA	NA	NA	21	NR_138591	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.130000	0.766169	
mm_137427.1	chr17	26270176	26270376	+	1	NA	NA	NA	17366	NR_037905	66978	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	0.015000	0.477612	
mm_31685.1	chr4	62298087	62298287	+	1	NA	NA	NA	6640	NM_001290518	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.005000	0.452736	
mm_137244.1	chr17	24488327	24488527	+	1	NA	NA	NA	-356	NM_027937	268932	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	0.095000	0.711443	
mm_171279.1	chr3	88835126	88835326	+	1	NA	NA	NA	-5	NM_027389	76022	Mm.126870	NM_027389	ENSMUSG00000054199	Gon4l	1500041I23Rik|2610100B20Rik|3632445O20Rik|5430404N14Rik|AA387005	gon-4-like (C.elegans)	protein-coding	0.100000	0.646766	
mm_109421.1	chr12	110499342	110499542	+	1	NA	NA	NA	13703	NM_012023	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.020000	0.527363	
mm_6859.1	chr1	84262707	84262907	-	1	NA	NA	NA	21838	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.010000	0.383085	
mm_127749.1	chr15	103473441	103473641	+	1	NA	NA	NA	19716	NM_153505	105855	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	0.025000	0.492537	
mm_163793.1	chr14	14702991	14703191	+	1	NA	NA	NA	66	NM_001033270	218756	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.160000	0.800995	
mm_114203.1	chr13	56067445	56067645	+	1	NA	NA	NA	68005	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.000000	0.542289	
mm_69669.1	chr7	139983771	139983971	-	1	NA	NA	NA	3003	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.010000	0.562189	
mm_73295.1	chr8	104972600	104972800	+	1	NA	NA	NA	10982	NM_197999	72361	Mm.26580	NM_197999	ENSMUSG00000031877	Ces2g	2210023G05Rik|Ces2l	carboxylesterase 2G	protein-coding	0.000000	0.323383	
mm_65481.1	chr7	25615747	25615947	-	1	NA	NA	NA	45	NM_001039243	632778	Mm.423112	NM_001039243	ENSMUSG00000074261	Erich4	EG632778|Gm7092|Kseg1	glutamate rich 4	protein-coding	0.020000	0.621891	
mm_27598.1	chr3	59142604	59142804	-	1	NA	NA	NA	-10242	NM_001287120	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.005000	0.388060	
mm_94037.1	chr10	128043720	128043920	-	1	NA	NA	NA	8474	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.000000	0.512438	-80(CTCTTTAGGGGC,+,0.00)
mm_170070.1	chr17	32403422	32403622	-	1	NA	NA	NA	59	NM_178785	320484	Mm.122284	NM_178785	ENSMUSG00000052142	Rasal3	A430107D22Rik	RAS protein activator like 3	protein-coding	0.025000	0.557214	
mm_135772.1	chr16	56831733	56831933	-	1	NA	NA	NA	-35975	NM_172825	239853	Mm.258979	NM_172825	ENSMUSG00000022755	Adgrg7	9130020O16Rik|Gpr128	adhesion G protein-coupled receptor G7	protein-coding	0.025000	0.477612	
mm_135398.1	chr16	44558738	44558938	-	1	NA	NA	NA	32	NM_172506	117606	Mm.41561	NM_172506	ENSMUSG00000022687	Boc	4732455C11|mFLJ00376	biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein	protein-coding	0.065000	0.616915	
mm_127790.1	chr15	3582071	3582271	-	1	NA	NA	NA	-329	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.030000	0.537313	
mm_117557.1	chr13	85126996	85127196	-	1	NA	NA	NA	-62289	NM_001347587	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0.020000	0.437811	
mm_47513.1	chr5	124077203	124077403	-	1	NA	NA	NA	18495	NM_019875	56325	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.045000	0.631841	
mm_149457.1	chr19	11517135	11517335	+	1	NA	NA	NA	-1324	NM_027209	69774	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	0.005000	0.398010	
mm_30178.1	chr3	144205419	144205619	-	1	NA	NA	NA	-264	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.115000	0.666667	
mm_141923.1	chr17	35001851	35002051	-	1	NA	NA	NA	1044	NM_011690	22321	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.040000	0.492537	
mm_165596.1	chr3	42361311	42361511	+	1	NA	NA	NA	618793	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.010000	0.477612	
mm_129973.1	chr15	85811523	85811723	-	1	NA	NA	NA	74	NM_001164626	72355	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	0.085000	0.691542	
mm_67080.1	chr7	68265392	68265592	-	1	NA	NA	NA	-1259	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.020000	0.497512	
mm_160092.1	chr7	16994263	16994463	+	1	NA	NA	NA	-225	NM_001101535	434130	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	ENSMUSG00000041117	coiled-coil domain containing 8	protein-coding	0.045000	0.572139	
mm_8719.1	chr1	160025653	160025853	-	1	NA	NA	NA	-18627	NR_028111	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.025000	0.557214	
mm_69401.1	chr7	132317049	132317249	-	1	NA	NA	NA	6	NM_029935	77590	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.095000	0.656716	
mm_140494.1	chr17	3557626	3557826	-	1	NA	NA	NA	-13	NM_146074	224481	Mm.226554	NM_146074	ENSMUSG00000036983	Tfb1m	AI429207	transcription factor B1, mitochondrial	protein-coding	0.075000	0.631841	
mm_162248.1	chrX	160390441	160390641	+	1	NA	NA	NA	-149	NM_001079847	237175	Mm.213016	NM_178712	ENSMUSG00000031298	Adgrg2	AW212196|B830041D06Rik|Gpr64|Me6	adhesion G protein-coupled receptor G2	protein-coding	0.095000	0.731343	
mm_173201.1	chrX	67835391	67835591	-	1	NA	NA	NA	85959	NM_025763	66780	Mm.79193	NM_025763	ENSMUSG00000025288	4933436I01Rik	-	RIKEN cDNA 4933436I01 gene	protein-coding	0.025000	0.497512	-37(GTCTATTTAAGG,-,0.00),-35(CTATTTAAGGAC,+,0.00)
mm_83182.1	chr9	40984383	40984583	-	1	NA	NA	NA	20145	NM_001281954	54698	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	0.010000	0.512438	
mm_111679.1	chr12	103382451	103382651	-	1	NA	NA	NA	5657	NR_033587	68149	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	0.005000	0.522388	
mm_5310.1	chr1	22509261	22509461	-	1	NA	NA	NA	-76518	NM_183018	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.010000	0.487562	
mm_1724.1	chr1	75367047	75367247	+	1	NA	NA	NA	6855	NM_010043	13346	Mm.6712	NM_010043	ENSMUSG00000026208	Des	-	desmin	protein-coding	0.015000	0.606965	
mm_79184.1	chr9	48403831	48404031	+	1	NA	NA	NA	41890	NM_172921	244853	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	0.015000	0.467662	
mm_155039.1	chrX	42149197	42149397	+	1	NA	NA	NA	-115	NM_001077712	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.110000	0.552239	
mm_69554.1	chr7	135698674	135698874	-	1	NA	NA	NA	17605	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.402985	
mm_118918.1	chr14	26766228	26766428	+	1	NA	NA	NA	-96482	NM_178668	211948	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	0.005000	0.368159	-77(TGCCATTAAGGG,-,0.00),88(GGATATTAAAGC,-,0.00)
mm_30095.1	chr3	138239578	138239778	-	1	NA	NA	NA	-15	NR_045760	68369	Mm.441136	NR_045760	ENSMUSG00000099146	0610031O16Rik	-	RIKEN cDNA 0610031O16 gene	ncRNA	0.020000	0.442786	
mm_80104.1	chr9	70341949	70342149	+	1	NA	NA	NA	63704	NR_049200	100885839		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0.025000	0.552239	
mm_74577.1	chr8	11219095	11219295	-	1	NA	NA	NA	-93610	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.015000	0.597015	
mm_123247.1	chr14	60444177	60444377	-	1	NA	NA	NA	65991	NM_001164705	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.005000	0.442786	
mm_73987.1	chr8	120668167	120668367	+	1	NA	NA	NA	42	NM_009941	12857	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit IV isoform 1	protein-coding	0.150000	0.751244	
mm_51793.1	chr6	88272277	88272477	+	1	NA	NA	NA	50109	NM_019964	56691	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	0.015000	0.497512	
mm_153625.1	chr19	44005489	44005689	-	1	NA	NA	NA	-19069	NM_030703	93721	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	0.025000	0.507463	
mm_164108.1	chr15	27571264	27571464	+	1	NA	NA	NA	-130	NR_106065	102466808		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0.025000	0.572139	
mm_161786.1	chr17	45465663	45465863	+	1	NA	NA	NA	9175	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.025000	0.517413	
mm_162334.1	chr1	43742463	43742663	-	1	NA	NA	NA	11961	NM_024283	78896	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	0.015000	0.368159	
mm_48663.1	chr5	145981134	145981334	-	1	NA	NA	NA	28383	NM_019792	56388	Mm.301900	NM_019792	ENSMUSG00000029630	Cyp3a25	AI327008	cytochrome P450, family 3, subfamily a, polypeptide 25	protein-coding	0.000000	0.353234	-97(AAGTCTAAAAGC,-,0.00)
mm_75090.1	chr8	34048852	34049052	-	1	NA	NA	NA	58862	NM_001293758	22428	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.005000	0.492537	
mm_152590.1	chr19	11604713	11604913	-	1	NA	NA	NA	-9	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.005000	0.447761	
mm_5894.1	chr1	54483069	54483269	-	1	NA	NA	NA	-44143	NM_001033194	98488	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0.025000	0.402985	
mm_29124.1	chr3	105054780	105054980	-	1	NA	NA	NA	-1734	NM_030249	80281	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.015000	0.477612	
mm_99315.1	chr11	101442192	101442392	+	1	NA	NA	NA	47	NM_011289	19942	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	0.065000	0.606965	
mm_140062.1	chr17	74682324	74682524	+	1	NA	NA	NA	-35326	NM_152817	74196	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0.020000	0.432836	
mm_137679.1	chr17	28817612	28817812	+	1	NA	NA	NA	16586	NM_001081315	268936	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0.050000	0.582090	
mm_11154.1	chr2	28540133	28540333	+	1	NA	NA	NA	6769	NM_001145836	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.010000	0.582090	
mm_97546.1	chr11	78925999	78926199	+	1	NA	NA	NA	808	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.010000	0.323383	
mm_157947.1	chrX	86400959	86401159	-	1	NA	NA	NA	-46065	NR_036689	245502	Mm.490821	NR_036689		Gm41	-	melanoma antigen, family B, 4 pseudogene	pseudo	0.015000	0.522388	
mm_158146.1	chrX	103467404	103467604	-	1	NA	NA	NA	15729	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.005000	0.348259	
mm_12558.1	chr2	72476093	72476293	+	1	NA	NA	NA	-26	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.120000	0.686567	
mm_144925.1	chr18	37689744	37689944	+	1	NA	NA	NA	-15	NM_033575	93700	Mm.247203	NM_033575	ENSMUSG00000102748	Pcdhgb2	-	protocadherin gamma subfamily B, 2	protein-coding	0.040000	0.512438	
mm_85474.1	chr9	105827923	105828123	-	1	NA	NA	NA	62	NM_001102607	245026	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0.040000	0.666667	
mm_170606.1	chr19	5845080	5845280	-	1	NA	NA	NA	298	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.015000	0.572139	
mm_63524.1	chr7	127904732	127904932	+	1	NA	NA	NA	759	NM_009739	12041	Mm.425495	NM_009739	ENSMUSG00000030802	Bckdk	AI327402	branched chain ketoacid dehydrogenase kinase	protein-coding	0.035000	0.517413	
mm_28222.1	chr3	88447082	88447282	-	1	NA	NA	NA	-6231	NR_105978	102465611		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	0.010000	0.417910	-36(GAGCATTAAAAG,-,0.00)
mm_38661.1	chr4	144408319	144408519	-	1	NA	NA	NA	45	NM_029948	77632	Mm.31283	NM_029948	ENSMUSG00000028591	Pramef12	4930569K13Rik|AU023001|C86578	PRAME family member 12	protein-coding	0.025000	0.522388	
mm_72844.1	chr8	88301069	88301269	+	1	NA	NA	NA	6965	NM_001037724	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.005000	0.477612	
mm_1422.1	chr1	67174254	67174454	+	1	NA	NA	NA	51327	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.015000	0.457711	
mm_15036.1	chr2	152756901	152757101	+	1	NA	NA	NA	2828	NM_053091	84682	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit IV isoform 2	protein-coding	0.030000	0.567164	
mm_149629.1	chr19	17205437	17205637	+	1	NA	NA	NA	133968	NM_001136484	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.005000	0.402985	
mm_45303.1	chr5	65419048	65419248	-	1	NA	NA	NA	16694	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.025000	0.532338	
mm_95869.1	chr11	58043007	58043207	+	1	NA	NA	NA	34043	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.010000	0.462687	
mm_137997.1	chr17	33677290	33677490	+	1	NA	NA	NA	8068	NM_001109913	76936	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	0.010000	0.363184	
mm_112877.1	chr13	20853959	20854159	+	1	NA	NA	NA	59946	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.293532	
mm_167624.1	chr9	59707503	59707703	+	1	NA	NA	NA	-161	NM_001033498	546134	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463	GRAM domain containing 2	protein-coding	0.010000	0.557214	
mm_136181.1	chr16	88885012	88885212	-	1	NA	NA	NA	-23	NM_130873	170654	Mm.196689	NM_130873	ENSMUSG00000043982	Krtap19-4	Krtap16-4	keratin associated protein 19-4	protein-coding	0.020000	0.467662	-35(GAGTATATAAGC,-,0.00)
mm_32389.1	chr4	106588873	106589073	+	1	NA	NA	NA	27935	NM_053272	74754	Mm.133370	NM_053272	ENSMUSG00000034926	Dhcr24	2310076D10Rik|5830417J06Rik|mKIAA0018	24-dehydrocholesterol reductase	protein-coding	0.005000	0.482587	
mm_164175.1	chr15	76198331	76198531	-	1	NA	NA	NA	-222	NM_201393	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.035000	0.587065	
mm_44178.1	chr5	150992116	150992316	+	1	NA	NA	NA	39609	NM_013823	16591	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.005000	0.407960	
mm_78449.1	chr9	32224227	32224427	+	1	NA	NA	NA	78	NM_177379	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.005000	0.557214	
mm_39850.1	chr5	30913410	30913610	+	1	NA	NA	NA	-276	NM_133918	100952	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	0.005000	0.601990	
mm_29285.1	chr3	107696247	107696447	-	1	NA	NA	NA	201	NM_145542	229709	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	0.190000	0.815920	
mm_144134.1	chr18	4980493	4980693	+	1	NA	NA	NA	-65996	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.025000	0.517413	
mm_170054.1	chr17	29492073	29492273	+	1	NA	NA	NA	1128	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.050000	0.577114	
mm_62424.1	chr7	101330261	101330461	+	1	NA	NA	NA	9042	NM_019990	56018	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	0.010000	0.592040	
mm_136482.1	chr16	96064348	96064548	-	1	NA	NA	NA	17980	NM_001103179	93871	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0.025000	0.407960	-7(TTTTTTAAACAC,+,0.00)
mm_154096.1	chr19	56964763	56964963	-	1	NA	NA	NA	43712	NM_146102	226250	Mm.226284	NM_146102	ENSMUSG00000025083	Afap1l2	AU041783|C86904|mKIAA1914	actin filament associated protein 1-like 2	protein-coding	0.010000	0.283582	
mm_95699.1	chr11	54400864	54401064	+	1	NA	NA	NA	30312	NM_029105	74847	Mm.486538	NM_029105	ENSMUSG00000020332	Meikin	4930404A10Rik	meiotic kinetochore factor	protein-coding	0.075000	0.572139	
mm_44632.1	chr5	27791280	27791480	-	1	NA	NA	NA	170	NM_018878	55982	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	0.175000	0.815920	
mm_9331.1	chr1	171919221	171919421	-	1	NA	NA	NA	1784	NM_030710	30925	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	0.020000	0.487562	60(CTTTATAGAGGT,+,0.00)
mm_123413.1	chr14	64104134	64104334	-	1	NA	NA	NA	1	NR_046192	78176	Mm.108055	NR_046192	ENSMUSG00000091686	4930471C04Rik	-	RIKEN cDNA 4930471C04 gene	ncRNA	0.005000	0.577114	
mm_60207.1	chr7	43437491	43437691	+	1	NA	NA	NA	453	NM_024253	72310	Mm.34613	NM_024253	ENSMUSG00000004612	Nkg7	2500004F03Rik	natural killer cell group 7 sequence	protein-coding	0.010000	0.522388	
mm_47265.1	chr5	121836766	121836966	-	1	NA	NA	NA	-7	NM_008507	16923	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.150000	0.796020	
mm_11172.1	chr2	28641145	28641345	+	1	NA	NA	NA	12	NM_022887	64930	Mm.224354	NM_022887	ENSMUSG00000026812	Tsc1	-	tuberous sclerosis 1	protein-coding	0.075000	0.631841	
mm_117348.1	chr13	69611364	69611564	-	1	NA	NA	NA	-1	NM_175283	78925	Mm.451912	NM_175283	ENSMUSG00000021594	Srd5a1	0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1	steroid 5 alpha-reductase 1	protein-coding	0.080000	0.661692	
mm_93126.1	chr10	91181587	91181787	-	1	NA	NA	NA	-10068	NM_001080130	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.115000	0.676617	
mm_117487.1	chr13	78183028	78183228	-	1	NA	NA	NA	13321	NM_001347538	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.005000	0.452736	
mm_21061.1	chr2	152765267	152765467	-	1	NA	NA	NA	11194	NM_053091	84682	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit IV isoform 2	protein-coding	0.005000	0.462687	-97(CCCTTAAGAGAC,+,0.00)
mm_144022.1	chr17	90036185	90036385	-	1	NA	NA	NA	52083	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.005000	0.308458	
mm_150990.1	chr19	46573329	46573529	+	1	NA	NA	NA	64	NM_053196	94279	Mm.296837	NM_053196	ENSMUSG00000025036	Sfxn2	C79732|F630107H02Rik	sideroflexin 2	protein-coding	0.070000	0.631841	
mm_42334.1	chr5	114902765	114902965	+	1	NA	NA	NA	5931	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.000000	0.437811	
mm_77911.1	chr9	7349917	7350117	+	1	NA	NA	NA	2643	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.422886	
mm_116300.1	chr13	36726385	36726585	-	1	NA	NA	NA	7992	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.025000	0.383085	
mm_35938.1	chr4	53033658	53033858	-	1	NA	NA	NA	21878	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.010000	0.417910	
mm_130829.1	chr15	101846301	101846501	-	1	NA	NA	NA	4385	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.030000	0.606965	
mm_7831.1	chr1	132116875	132117075	-	1	NA	NA	NA	22710	NM_008795	18557	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.030000	0.582090	
mm_60060.1	chr7	31162001	31162201	+	1	NA	NA	NA	-257	NR_046062	100038516	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322|ENSMUSG00000074193	predicted gene 10640	ncRNA	0.005000	0.517413	
mm_68647.1	chr7	118491391	118491591	-	1	NA	NA	NA	484	NM_001033380	319622	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	0.110000	0.756219	
mm_78902.1	chr9	44733876	44734076	+	1	NA	NA	NA	1222	NM_153537	102693	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.075000	0.646766	
mm_68921.1	chr7	126463202	126463402	-	1	NA	NA	NA	-229	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.010000	0.552239	
mm_25410.1	chr3	107291193	107291393	+	1	NA	NA	NA	1	NM_146136	229699	Mm.38384	NM_146136	ENSMUSG00000027896	Slc16a4	AW146050|MCT 5	solute carrier family 16 (monocarboxylic acid transporters), member 4	protein-coding	0.020000	0.487562	
mm_59732.1	chr7	28809141	28809341	+	1	NA	NA	NA	-1649	NM_177301	15388	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.065000	0.587065	37(CCATTTATATCC,+,0.00)
mm_2789.1	chr1	130849478	130849678	+	1	NA	NA	NA	-16199	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.010000	0.487562	
mm_102997.1	chr11	69686937	69687137	-	1	NA	NA	NA	-1483	NM_023517	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.020000	0.587065	
mm_151910.1	chr19	5799511	5799711	-	1	NA	NA	NA	3061	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.000000	0.318408	-27(GCTTTAATGACC,+,0.00),9(GCTTTTATATTA,+,0.00)
mm_126190.1	chr15	78670540	78670740	+	1	NA	NA	NA	47473	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0.015000	0.582090	
mm_52377.1	chr6	113086726	113086926	+	1	NA	NA	NA	9187	NM_028385	72895	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0.000000	0.318408	
mm_97184.1	chr11	75566767	75566967	+	1	NA	NA	NA	15438	NR_039553	100628624		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0.020000	0.527363	
mm_39401.1	chr5	14032634	14032834	+	1	NA	NA	NA	7458	NM_011348	20349	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	0.005000	0.328358	
mm_56204.1	chr6	88902658	88902858	-	1	NA	NA	NA	507	NM_011906	24100	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.050000	0.641791	
mm_95738.1	chr11	54691374	54691574	+	1	NA	NA	NA	95328	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.005000	0.492537	
mm_97102.1	chr11	73389726	73389926	+	1	NA	NA	NA	9669	NM_146921	258923	Mm.246523	NM_146921	ENSMUSG00000069823	Olfr1	I54|MOR135-13	olfactory receptor 1	protein-coding	0.005000	0.477612	
mm_40812.1	chr5	71699887	71700087	+	1	NA	NA	NA	-29	NM_008069	14400	Mm.38567	NM_008069	ENSMUSG00000029212	Gabrb1	AW061132|B230208N19Rik|Gabrb-1	gamma-aminobutyric acid (GABA) A receptor, subunit beta 1	protein-coding	0.040000	0.467662	
mm_109379.1	chr12	109706705	109706905	+	1	NA	NA	NA	-2255	NR_029880	723858		NR_029880	ENSMUSG00000065498	Mir379	Mirn379|mir-379|mmu-mir-379	microRNA 379	ncRNA	0.000000	0.477612	
mm_145743.1	chr18	64339931	64340131	+	1	NA	NA	NA	-333	NM_194268	225631	Mm.234723	NM_194268	ENSMUSG00000045991	Onecut2	C730009D12|OC-2|Oc2	one cut domain, family member 2	protein-coding	0.100000	0.681592	
mm_122275.1	chr14	34379106	34379306	-	1	NA	NA	NA	3702	NM_153127	105450	Mm.272673	NM_153127	ENSMUSG00000041445	Mmrn2	AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1	multimerin 2	protein-coding	0.020000	0.577114	
mm_97096.1	chr11	73199373	73199573	+	1	NA	NA	NA	-9	NM_029031	74637	Mm.200905	NM_029031	ENSMUSG00000005951	Shpk	4930431K22Rik|AI194947|AW260459|Carkl	sedoheptulokinase	protein-coding	0.070000	0.582090	
mm_160252.1	chr7	107209583	107209783	+	1	NA	NA	NA	238	NM_029660	76572	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	0.085000	0.606965	
mm_134367.1	chr16	17121610	17121810	-	1	NA	NA	NA	2432	NR_029659	723816		NR_029659	ENSMUSG00000065572	Mir130b	Mirn130b|mir-130b	microRNA 130b	ncRNA	0.035000	0.601990	
mm_37099.1	chr4	116618830	116619030	-	1	NA	NA	NA	8567	NM_001081475	50927	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.000000	0.353234	
mm_53735.1	chr6	145121758	145121958	+	1	NA	NA	NA	119	NM_008511	16970	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.035000	0.527363	
mm_164400.1	chr16	34262839	34263039	-	1	NA	NA	NA	251088	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.030000	0.606965	
mm_55209.1	chr6	52217432	52217632	-	1	NA	NA	NA	1041	NM_010455	15404	Mm.294826	NM_010455	ENSMUSG00000038236	Hoxa7	AV118143|Hox-1.1|M6	homeobox A7	protein-coding	0.075000	0.577114	
mm_139244.1	chr17	47733722	47733922	+	1	NA	NA	NA	-3215	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.015000	0.522388	
mm_54404.1	chr6	31563747	31563947	-	1	NA	NA	NA	90	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	0.150000	0.761194	
mm_43785.1	chr5	142463945	142464145	+	1	NA	NA	NA	114	NM_172725	231855	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.095000	0.651741	
mm_3723.1	chr1	154204813	154205013	+	1	NA	NA	NA	3726	NM_001204908	100503355	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	ENSMUSG00000066797|Gm10178|Gm203	zinc finger protein 648	protein-coding	0.090000	0.641791	
mm_29071.1	chr3	103809244	103809444	-	1	NA	NA	NA	43	NM_133865	140917	Mm.374850	NM_133865	ENSMUSG00000027845	Dclre1b	AI452214|Apollo|SNMIB|mSNM1B	DNA cross-link repair 1B	protein-coding	0.115000	0.631841	
mm_42117.1	chr5	110840157	110840357	+	1	NA	NA	NA	240	NM_016681	50883	Mm.279308	NM_016681	ENSMUSG00000029521	Chek2	CHK2|Cds1|HUCDS1|Rad53	checkpoint kinase 2	protein-coding	0.055000	0.537313	
mm_92798.1	chr10	81357285	81357485	-	1	NA	NA	NA	-185	NM_028657	73822	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1	major facilitator superfamily domain containing 12	protein-coding	0.100000	0.527363	
mm_30134.1	chr3	142169129	142169329	-	1	NA	NA	NA	-1	NM_001277216	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.115000	0.706468	
mm_15376.1	chr2	156475625	156475825	+	1	NA	NA	NA	191	NM_001006664	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.145000	0.835821	
mm_8668.1	chr1	156667384	156667584	-	1	NA	NA	NA	6855	NM_023141	30935	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.060000	0.532338	
mm_160033.1	chr6	132595692	132595892	+	1	NA	NA	NA	-154	NM_031499	83380	Mm.333439	NM_031499	ENSMUSG00000058295	Prp2	MP14	proline rich protein 2	protein-coding	0.000000	0.373134	85(CTCCTTATAAAG,-,0.00),87(CCTTATAAAGGC,+,0.00),87(CCTTATAAAGGC,-,0.00)
mm_112503.1	chr13	8292873	8293073	+	1	NA	NA	NA	90107	NM_052977	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding	0.005000	0.412935	
mm_87887.1	chr10	61733048	61733248	+	1	NA	NA	NA	12499	NM_153779	71361	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	0.010000	0.507463	
mm_171035.1	chr2	91457380	91457580	+	1	NA	NA	NA	-51	NM_172668	228357	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0.110000	0.796020	
mm_102102.1	chr11	52403279	52403479	-	1	NA	NA	NA	6951	NM_153117	213673	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.040000	0.606965	
mm_40348.1	chr5	45669826	45670026	+	1	NA	NA	NA	1	NM_019438	54392	Mm.32012	NM_019438	ENSMUSG00000015880	Ncapg	5730507H05Rik|Hcapg|MFT.M05.13	non-SMC condensin I complex, subunit G	protein-coding	0.105000	0.631841	
mm_107907.1	chr12	70974571	70974771	+	1	NA	NA	NA	48	NM_011184	19167	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0.080000	0.606965	
mm_40572.1	chr5	63812393	63812593	+	1	NA	NA	NA	-2	NM_029554	76261	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.145000	0.756219	
mm_118021.1	chr13	100833133	100833333	-	1	NA	NA	NA	194	NM_022885	69048	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.145000	0.756219	
mm_63858.1	chr7	135671950	135672150	+	1	NA	NA	NA	-19736	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.015000	0.398010	
mm_110746.1	chr12	69893069	69893269	-	1	NA	NA	NA	-6	NM_201519	399510	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	0.155000	0.771144	
mm_168562.1	chr11	6894974	6895174	-	1	NA	NA	NA	-168415	NM_009622	432530	Mm.259733	NM_009622	ENSMUSG00000020431	Adcy1	AC1|D11Bwg1392e|I-AC|brl|mKIAA4070	adenylate cyclase 1	protein-coding	0.005000	0.542289	
mm_34495.1	chr4	148593798	148593998	+	1	NA	NA	NA	2385	NM_009272	20810	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	0.025000	0.542289	
mm_145065.1	chr18	40541303	40541503	+	1	NA	NA	NA	283042	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.005000	0.293532	
mm_109654.1	chr12	112866610	112866810	+	1	NA	NA	NA	-5794	NM_019925	56696	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.030000	0.547264	
mm_47097.1	chr5	118067752	118067952	-	1	NA	NA	NA	40028	NM_021344	57816	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	0.005000	0.592040	
mm_94277.1	chr11	3924941	3925141	+	1	NA	NA	NA	6920	NM_001130459	21452	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	0.015000	0.537313	
mm_67302.1	chr7	79300871	79301071	-	1	NA	NA	NA	27705	NM_018811	54608	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.015000	0.457711	
mm_88240.1	chr10	71527209	71527409	+	1	NA	NA	NA	179546	NM_027184	69718	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.020000	0.507463	
mm_77645.1	chr8	124559213	124559413	-	1	NA	NA	NA	10394	NM_007428	11606	Mm.301626	NM_007428	ENSMUSG00000031980	Agt	AI265500|AngI|AngII|Aogen|Serpina8	angiotensinogen (serpin peptidase inhibitor, clade A, member 8)	protein-coding	0.050000	0.616915	
mm_126516.1	chr15	81850217	81850417	+	1	NA	NA	NA	8009	NM_020507	57259	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.015000	0.611940	
mm_82421.1	chr9	14903753	14903953	-	1	NA	NA	NA	98	NM_176807	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.015000	0.547264	
mm_42119.1	chr5	110879715	110879915	+	1	NA	NA	NA	12	NM_001267622	209683	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	0.185000	0.786070	
mm_97016.1	chr11	71019778	71019978	+	1	NA	NA	NA	-37	NM_001291146	116891	Mm.28131	NM_033562	ENSMUSG00000018442	Derl2	CGI-101|Derlin-2|F-lana|Flana	Der1-like domain family, member 2	protein-coding	0.110000	0.641791	
mm_69379.1	chr7	131320010	131320210	-	1	NA	NA	NA	2182	NM_008411	16433	Mm.142717	NM_008411	ENSMUSG00000040205	Cuzd1	Erg-1|Itmap1|Uo-44|Usg|Utczp	CUB and zona pellucida-like domains 1	protein-coding	0.005000	0.482587	
mm_7740.1	chr1	130911446	130911646	-	1	NA	NA	NA	-250	NM_021380	58181	Mm.103794	NM_021380	ENSMUSG00000026416	Il20	Zcyto10	interleukin 20	protein-coding	0.010000	0.487562	
mm_23587.1	chr3	63984126	63984326	+	1	NA	NA	NA	8083	NM_001033300	229363	Mm.331051	NM_001033300	ENSMUSG00000027823	Gmps	670032|AA591640|AI047208|Gm9479	guanine monophosphate synthetase	protein-coding	0.000000	0.323383	
mm_137102.1	chr17	21707612	21707812	+	1	NA	NA	NA	-29	NM_001008501	240034	Mm.34723	NM_001008501	ENSMUSG00000067928	Zfp760	9430018I06|BC029103	zinc finger protein 760	protein-coding	0.050000	0.552239	
mm_61666.1	chr7	80779618	80779818	+	1	NA	NA	NA	23613	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.025000	0.577114	89(GACCAGAAAAGG,-,0.00)
mm_96209.1	chr11	62281348	62281548	+	1	NA	NA	NA	-25	NM_028360	72795	Mm.489722	NM_028360	ENSMUSG00000042298	Ttc19	2010204O13Rik|2810460C24Rik|AI505442	tetratricopeptide repeat domain 19	protein-coding	0.135000	0.711443	
mm_11902.1	chr2	50296935	50297135	+	1	NA	NA	NA	225	NR_040362	100502624	Mm.382825	NR_040361	ENSMUSG00000085862	Gm13483	OTTMUSG00000012382	predicted gene 13483	ncRNA	0.005000	0.313433	
mm_151447.1	chr19	57610950	57611150	+	1	NA	NA	NA	16	NM_181415	226255	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0.155000	0.796020	
mm_51559.1	chr6	83353134	83353334	+	1	NA	NA	NA	3750	NM_175277	78653	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0.060000	0.626866	
mm_32302.1	chr4	103123489	103123689	+	1	NA	NA	NA	4199	NM_001039081	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.000000	0.283582	
mm_110029.1	chr12	16800866	16801066	-	1	NA	NA	NA	-80	NM_015764	268527	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	0.070000	0.671642	
mm_128685.1	chr15	60824854	60825054	-	1	NA	NA	NA	126	NM_001162926	399603	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	0.090000	0.691542	10(CTCTTTAAATGC,-,0.00)
mm_128155.1	chr15	32244551	32244751	-	1	NA	NA	NA	11	NR_038186	100616095	Mm.391938	NR_038186	ENSMUSG00000096956	Snhg18	0610007N19Rik|Snord123	small nucleolar RNA host gene 18	ncRNA	0.050000	0.681592	
mm_111593.1	chr12	101975882	101976082	-	1	NA	NA	NA	8	NM_016856	51786	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.095000	0.671642	
mm_165967.1	chr4	95934030	95934230	-	1	NA	NA	NA	32905	NR_045777	319247	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0.020000	0.472637	
mm_89939.1	chr10	111273030	111273230	+	1	NA	NA	NA	-25549	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.040000	0.487562	-57(CCTTATCTGGAC,+,0.00)
mm_25411.1	chr3	107333696	107333896	+	1	NA	NA	NA	-507	NM_001045807	229700	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.085000	0.606965	
mm_137188.1	chr17	23820937	23821137	+	1	NA	NA	NA	8072	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.020000	0.577114	
mm_133095.1	chr16	64851877	64852077	+	1	NA	NA	NA	-108	NM_178647	106143	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.120000	0.711443	
mm_2906.1	chr1	131974217	131974417	+	1	NA	NA	NA	3708	NM_145977	212980	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.015000	0.512438	82(CTTTTTATAAGC,+,0.00),82(CTTTTTATAAGC,-,0.00)
mm_148831.1	chr19	6342438	6342638	+	1	NA	NA	NA	1378	NR_117093	26412	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0.005000	0.577114	
mm_138341.1	chr17	34911114	34911314	+	1	NA	NA	NA	-3252	NM_023557	70129	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22	solute carrier family 44, member 4	protein-coding	0.020000	0.592040	
mm_68541.1	chr7	113816887	113817087	-	1	NA	NA	NA	50989	NM_145584	233744	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.005000	0.477612	
mm_34680.1	chr4	151376356	151376556	+	1	NA	NA	NA	286886	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	0.100000	0.547264	
mm_126268.1	chr15	79109098	79109298	+	1	NA	NA	NA	215	NM_177461	27008	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	0.135000	0.776119	
mm_141985.1	chr17	35165033	35165233	-	1	NA	NA	NA	-256	NM_020027	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.100000	0.601990	71(CCCTTTATGCAA,+,0.00)
mm_67626.1	chr7	84151803	84152003	-	1	NA	NA	NA	-10	NM_133722	70178	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.150000	0.805970	
mm_109696.1	chr12	113152544	113152744	+	1	NA	NA	NA	632	NM_007763	12925	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	0.055000	0.587065	
mm_55264.1	chr6	53820391	53820591	-	1	NA	NA	NA	334	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.085000	0.601990	
mm_152539.1	chr19	11327900	11328100	-	1	NA	NA	NA	6695	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.005000	0.442786	
mm_144056.1	chr17	90607016	90607216	-	1	NA	NA	NA	-151236	NM_001346959	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.010000	0.293532	
mm_123776.1	chr14	70318761	70318961	-	1	NA	NA	NA	-29364	NM_001304992	19057	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	0.025000	0.572139	
mm_85083.1	chr9	91365316	91365516	-	1	NA	NA	NA	383	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.055000	0.582090	
mm_67241.1	chr7	75308879	75309079	-	1	NA	NA	NA	277	NR_045814	68954	Mm.46960	NR_045812	ENSMUSG00000097247	1500012K07Rik	-	RIKEN cDNA 1500012K07 gene	ncRNA	0.090000	0.671642	
mm_20601.1	chr2	131352773	131352973	-	1	NA	NA	NA	19	NM_178607	51902	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	0.125000	0.741294	
mm_139258.1	chr17	47738067	47738267	+	1	NA	NA	NA	236	NM_001161723	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.060000	0.641791	
mm_101535.1	chr11	33513546	33513746	-	1	NA	NA	NA	100	NR_110973	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.145000	0.791045	
mm_161444.1	chr15	73624644	73624844	-	1	NA	NA	NA	0	NM_001033219	106068	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.000000	0.457711	
mm_144236.1	chr18	10617766	10617966	+	1	NA	NA	NA	70	NM_009226	20641	Mm.603	NM_009226	ENSMUSG00000002477	Snrpd1	AA407109|AL023031|SMD1	small nuclear ribonucleoprotein D1	protein-coding	0.115000	0.646766	
mm_107507.1	chr12	40038014	40038214	+	1	NA	NA	NA	-127	NM_001039515	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.150000	0.741294	
mm_70753.1	chr8	19682548	19682748	+	1	NA	NA	NA	-46928	NM_001270553	100861668	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.015000	0.477612	
mm_11960.1	chr2	53123779	53123979	+	1	NA	NA	NA	67308	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.010000	0.472637	65(CGCTATATAAGA,-,0.00)
mm_169925.1	chr16	57391328	57391528	-	1	NA	NA	NA	38151	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.095000	0.601990	
mm_129072.1	chr15	75678669	75678869	-	1	NA	NA	NA	21	NM_028404	72960	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	0.090000	0.696517	
mm_102107.1	chr11	53257629	53257829	-	1	NA	NA	NA	42750	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.005000	0.512438	
mm_125694.1	chr15	66891284	66891484	+	1	NA	NA	NA	-9	NM_018865	22402	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0.030000	0.562189	
mm_77681.1	chr8	125669646	125669846	-	1	NA	NA	NA	-72	NM_028908	74393	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0.085000	0.557214	
mm_140294.1	chr17	85620730	85620930	+	1	NA	NA	NA	-4	NM_011381	20473	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0.055000	0.522388	
mm_28047.1	chr3	84040061	84040261	-	1	NA	NA	NA	0	NM_172681	229473	Mm.28838	NM_172681	ENSMUSG00000033767	D930015E06Rik	Kiaa0922|mKIAA0922	RIKEN cDNA D930015E06 gene	protein-coding	0.150000	0.805970	
mm_27233.1	chr3	36468834	36469034	-	1	NA	NA	NA	6590	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.000000	0.427861	
mm_136565.1	chr17	3326469	3326669	+	1	NA	NA	NA	-4	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.095000	0.666667	
mm_172545.1	chr7	99249182	99249382	-	1	NA	NA	NA	-10671	NM_177448	233549	Mm.208030	NM_177448	ENSMUSG00000052396	Mogat2	DGAT2L5|MGAT2|Mgat1l	monoacylglycerol O-acyltransferase 2	protein-coding	0.065000	0.552239	
mm_164731.1	chr17	65642049	65642249	-	1	NA	NA	NA	55	NM_001146002	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.020000	0.517413	
mm_108544.1	chr12	84361540	84361740	+	1	NA	NA	NA	181	NM_172581	217705	Mm.259468	NM_172581	ENSMUSG00000021234	Fam161b	9330169D17|9830169C18Rik	family with sequence similarity 161, member B	protein-coding	0.050000	0.557214	
mm_72171.1	chr8	72268608	72268808	+	1	NA	NA	NA	28690	NM_007456	11767	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	0.025000	0.562189	
mm_44474.1	chr5	23433185	23433385	-	1	NA	NA	NA	1068	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.070000	0.631841	
mm_13626.1	chr2	113525300	113525500	+	1	NA	NA	NA	84336	NM_001285459	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.005000	0.497512	
mm_78534.1	chr9	35211101	35211301	+	1	NA	NA	NA	-2	NM_026130	67398	Mm.284688	NM_026130	ENSMUSG00000032042	Srpr	1300011P19Rik|D11Mgi27|Srpra	signal recognition particle receptor ('docking protein')	protein-coding	0.135000	0.701493	
mm_9936.1	chr1	190144408	190144608	-	1	NA	NA	NA	26172	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding	0.000000	0.373134	
mm_104300.1	chr11	90549332	90549532	-	1	NA	NA	NA	88676	NM_011505	20913	Mm.207203	NM_011505	ENSMUSG00000020546	Stxbp4	6030470M02Rik|Synip	syntaxin binding protein 4	protein-coding	0.010000	0.457711	
mm_127206.1	chr15	99215065	99215265	+	1	NA	NA	NA	-9811	NM_010601	16512	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0.005000	0.542289	
mm_53957.1	chr6	5484065	5484265	-	1	NA	NA	NA	12113	NM_013743	27273	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.010000	0.437811	
mm_91449.1	chr10	33947711	33947911	-	1	NA	NA	NA	3401	NM_028287	72580	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	0.000000	0.213930	
mm_146979.1	chr18	33832692	33832892	-	1	NA	NA	NA	37900	NR_038151	69749	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.020000	0.472637	
mm_171446.1	chr4	143978381	143978581	-	1	NA	NA	NA	15888	NM_001085540	626943		NM_001085540	ENSMUSG00000078509	Pramef17	Gm13107|OTTMUSG00000010438	PRAME family member 17	protein-coding	0.020000	0.542289	
mm_15247.1	chr2	154689511	154689711	+	1	NA	NA	NA	32585	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.040000	0.577114	
mm_120588.1	chr14	69840329	69840529	+	1	NA	NA	NA	22	NM_028526	73523	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0.005000	0.462687	
mm_19083.1	chr2	77946284	77946484	-	1	NA	NA	NA	-28	NM_030560	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	0.045000	0.467662	
mm_36826.1	chr4	105110500	105110700	-	1	NA	NA	NA	-702	NM_178143	108079	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding	0.005000	0.487562	
mm_21465.1	chr2	160912252	160912452	-	1	NA	NA	NA	-13	NM_182840	280635	Mm.330747	NM_182840	ENSMUSG00000050700	Emilin3	1110013O17Rik|EMILIN-3|EMILIN-5|EMILIN-T|Emilin5	elastin microfibril interfacer 3	protein-coding	0.145000	0.786070	
mm_48095.1	chr5	137061957	137062157	-	1	NA	NA	NA	10215	NM_008871	18787	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.005000	0.462687	
mm_160153.1	chr7	43690085	43690285	+	1	NA	NA	NA	-233	NM_174866	317653	Mm.247377	NM_174866	ENSMUSG00000044737	Klk14	GK14	kallikrein related-peptidase 14	protein-coding	0.010000	0.582090	
mm_118058.1	chr13	102682524	102682724	-	1	NA	NA	NA	-10934	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.005000	0.333333	-82(CTTTTTATAGAA,+,0.00)
mm_161098.1	chr12	99449762	99449962	-	1	NA	NA	NA	212	NM_183186	71375	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.005000	0.388060	
mm_167071.1	chr7	99601596	99601796	+	1	NA	NA	NA	25407	NM_001195529	100503386	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	0.000000	0.517413	
mm_22314.1	chr2	180439457	180439657	-	1	NA	NA	NA	-21421	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.020000	0.487562	
mm_88181.1	chr10	69925763	69925963	+	1	NA	NA	NA	331	NM_009670	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.035000	0.407960	-93(GCTTTTATGTCA,+,0.00)
mm_94628.1	chr11	16810810	16811010	+	1	NA	NA	NA	58707	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.005000	0.407960	
mm_172947.1	chr9	81677989	81678189	+	1	NA	NA	NA	-45537	NM_010482	15551	Mm.445308	NM_010482	ENSMUSG00000049511	Htr1b	-	5-hydroxytryptamine (serotonin) receptor 1B	protein-coding	0.025000	0.358209	
mm_134157.1	chr16	10790846	10791046	-	1	NA	NA	NA	-32	NM_013638	19120	Mm.291887	NM_013638	ENSMUSG00000050058	Prm3	BC061127|PX|Pxg	protamine 3	protein-coding	0.015000	0.606965	
mm_17157.1	chr2	25228340	25228540	-	1	NA	NA	NA	-3738	NM_146116	227613	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	0.005000	0.532338	
mm_46588.1	chr5	107723992	107724192	-	1	NA	NA	NA	251	NM_010278	14581	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.050000	0.666667	
mm_154182.1	chr19	58793172	58793372	-	1	NA	NA	NA	1142	NM_026208	67507	Mm.27027	NM_026208	ENSMUSG00000026931	1700019N19Rik	-	RIKEN cDNA 1700019N19 gene	protein-coding	0.015000	0.482587	
mm_7532.1	chr1	124375671	124375871	-	1	NA	NA	NA	-330212	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.010000	0.318408	34(TTTTTTAAAGTG,+,0.00)
mm_78831.1	chr9	44134562	44134762	+	1	NA	NA	NA	4	NM_023061	84004	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.115000	0.756219	
mm_78017.1	chr9	13662507	13662707	+	1	NA	NA	NA	147	NM_173776	270118	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like 2 (Drosophila)	protein-coding	0.005000	0.457711	
mm_62944.1	chr7	119526142	119526342	+	1	NA	NA	NA	-23	NM_178758	272428	Mm.185183	NM_178758	ENSMUSG00000030972	Acsm5	C730019D22|C730027J19Rik	acyl-CoA synthetase medium-chain family member 5	protein-coding	0.000000	0.542289	
mm_95044.1	chr11	32277818	32278018	+	1	NA	NA	NA	1318	NM_010405	15126	Mm.141758	NM_010405	ENSMUSG00000055609	Hba-x	AI450015|Hbz	hemoglobin X, alpha-like embryonic chain in Hba complex	protein-coding	0.045000	0.567164	
mm_80953.1	chr9	103007841	103008041	+	1	NA	NA	NA	-548	NM_033314	24059	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	0.050000	0.601990	
mm_29994.1	chr3	135550365	135550565	-	1	NA	NA	NA	64854	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.005000	0.477612	-36(GACCATAAATGG,-,0.00),-34(CCATAAATGGGG,+,0.00)
mm_130392.1	chr15	97910510	97910710	-	1	NA	NA	NA	-2314	NM_009504	22337	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D receptor	protein-coding	0.010000	0.442786	
mm_35500.1	chr4	41048003	41048203	-	1	NA	NA	NA	33	NM_007473	11832	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	0.000000	0.567164	
mm_61941.1	chr7	90182725	90182925	+	1	NA	NA	NA	52593	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.313433	
mm_69849.1	chr7	141427279	141427479	-	1	NA	NA	NA	2041	NM_021316	57754	Mm.87027	NM_021316	ENSMUSG00000060240	Cend1	1500001H12Rik|AI415214|BM88	cell cycle exit and neuronal differentiation 1	protein-coding	0.020000	0.432836	-100(GCCTTTCTAGCC,+,0.00)
mm_122891.1	chr14	54949348	54949548	-	1	NA	NA	NA	-306	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.030000	0.587065	
mm_164584.1	chr17	25901714	25901914	+	1	NA	NA	NA	413	NR_028042	100043160	Mm.482893	NR_028042		Gm10012	ENSMUSG00000056875	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.045000	0.467662	
mm_24585.1	chr3	93444792	93444992	+	1	NA	NA	NA	2562	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.060000	0.626866	
mm_129641.1	chr15	80264199	80264399	-	1	NA	NA	NA	7	NM_175109	66538	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	0.120000	0.666667	
mm_104481.1	chr11	95570291	95570491	-	1	NA	NA	NA	17307	NM_033217	18053	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	0.000000	0.552239	
mm_29441.1	chr3	110143419	110143619	-	1	NA	NA	NA	-47	NM_030699	80883	Mm.39262	NM_030699	ENSMUSG00000059857	Ntng1	A930010C08Rik|AI853992|Lmnt1	netrin G1	protein-coding	0.080000	0.512438	
mm_20166.1	chr2	122215266	122215466	-	1	NA	NA	NA	-19473	NM_146126	20322	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	0.015000	0.447761	-28(CCTTTTATAAGT,+,0.00)
mm_41503.1	chr5	92331738	92331938	+	1	NA	NA	NA	11	NM_001310664	109979	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0.025000	0.532338	
mm_115794.1	chr13	19341606	19341806	-	1	NA	NA	NA	54107	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.417910	
mm_151418.1	chr19	56745421	56745621	+	1	NA	NA	NA	23149	NM_007419	11554	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.030000	0.492537	
mm_160089.1	chr7	16425749	16425949	+	1	NA	NA	NA	24653	NM_198631	330474	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.030000	0.502488	-39(TCCTAGATAAGG,-,0.00)
mm_137089.1	chr17	21489111	21489311	+	1	NA	NA	NA	223	NM_013843	24132	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	0.085000	0.701493	
mm_56241.1	chr6	90716316	90716516	-	1	NA	NA	NA	113	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.140000	0.756219	
mm_25019.1	chr3	98013501	98013701	+	1	NA	NA	NA	63	NM_010928	18129	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.120000	0.741294	
mm_128232.1	chr15	36605435	36605635	-	1	NA	NA	NA	3438	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.005000	0.398010	
mm_63471.1	chr7	127598567	127598767	+	1	NA	NA	NA	5778	NR_027915	68232	Mm.347960	NM_026628	ENSMUSG00000099579	1700120K04Rik	-	RIKEN cDNA 1700120K04 gene	ncRNA	0.010000	0.363184	
mm_57546.1	chr6	126712592	126712792	-	1	NA	NA	NA	27982	NM_013568	16494	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	0.025000	0.512438	
mm_159527.1	chr4	62291453	62291653	+	1	NA	NA	NA	6	NM_001290518	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.000000	0.472637	
mm_35753.1	chr4	45811086	45811286	-	1	NA	NA	NA	12164	NM_028270	72535	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	0.005000	0.398010	
mm_170733.1	chr2	152226834	152227034	+	1	NA	NA	NA	94	NM_007788	12995	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0.120000	0.711443	
mm_121546.1	chr14	122474722	122474922	+	1	NA	NA	NA	377	NR_045046	69248	Mm.235369	NR_045046	ENSMUSG00000085555	2610035F20Rik	-	RIKEN cDNA 2610035F20 gene	ncRNA	0.090000	0.626866	
mm_143423.1	chr17	70846169	70846369	-	1	NA	NA	NA	508	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.010000	0.537313	
mm_67814.1	chr7	98162243	98162443	-	1	NA	NA	NA	-1	NM_001301250	12337	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0.015000	0.562189	
mm_155133.1	chrX	49493028	49493228	+	1	NA	NA	NA	22678	NM_001081123	75404	Mm.44305	NM_001081123	ENSMUSG00000036198	Arhgap36	1100001E04Rik|rho-gap	Rho GTPase activating protein 36	protein-coding	0.000000	0.477612	
mm_88428.1	chr10	77416162	77416362	+	1	NA	NA	NA	2011	NM_130895	110532	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0.000000	0.517413	
mm_14738.1	chr2	144337723	144337923	+	1	NA	NA	NA	-5743	NM_026924	107586	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0.035000	0.557214	
mm_17562.1	chr2	30194059	30194259	-	1	NA	NA	NA	11540	NM_172404	70266	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	0.015000	0.547264	
mm_21083.1	chr2	152951478	152951678	-	1	NA	NA	NA	4	NM_001159376	252864	Mm.330671	NM_145744	ENSMUSG00000042662	Dusp15	AI851682|LMW-DSP10|T-DSP10	dual specificity phosphatase-like 15	protein-coding	0.105000	0.776119	
mm_144741.1	chr18	35571892	35572092	+	1	NA	NA	NA	9834	NM_010771	17184	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0.015000	0.378109	
mm_108283.1	chr12	79130708	79130908	+	1	NA	NA	NA	20	NM_009705	11847	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.075000	0.641791	
mm_29700.1	chr3	123117097	123117297	-	1	NA	NA	NA	-82210	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.020000	0.567164	
mm_146673.1	chr18	12648363	12648563	-	1	NA	NA	NA	4930	NM_028341	72747	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.005000	0.507463	
mm_76716.1	chr8	94696155	94696355	-	1	NA	NA	NA	-13	NM_026385	67801	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	0.120000	0.721393	
mm_61081.1	chr7	51622035	51622235	+	1	NA	NA	NA	305	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.040000	0.512438	
mm_112752.1	chr13	19341964	19342164	+	1	NA	NA	NA	53749	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.402985	
mm_158264.1	chrX	109013379	109013579	-	1	NA	NA	NA	-99	NM_016710	50887	Mm.298443	NM_016710	ENSMUSG00000031245	Hmgn5	GARP45|NBP-45|Nsbp1	high-mobility group nucleosome binding domain 5	protein-coding	0.070000	0.567164	
mm_108093.1	chr12	74298229	74298429	+	1	NA	NA	NA	855	NM_198866	386753	Mm.341686	NM_198866	ENSMUSG00000029878	Dbpht2	Spot2	DNA binding protein with his-thr domain	protein-coding	0.010000	0.323383	15(TCGTATATAAGC,-,0.00)
mm_107450.1	chr12	36677269	36677469	+	1	NA	NA	NA	-138836	NR_039558	100628578		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA	0.005000	0.492537	
mm_155382.1	chrX	71812716	71812916	+	1	NA	NA	NA	-3264	NM_001290781	67048	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding	0.005000	0.537313	
mm_109173.1	chr12	108371133	108371333	+	1	NA	NA	NA	80	NM_001286346	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.035000	0.671642	
mm_18479.1	chr2	62483545	62483745	-	1	NA	NA	NA	8	NM_008100	14526	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding	0.015000	0.502488	-35(GCATATAAAAGC,-,0.00)
mm_21420.1	chr2	158137529	158137729	-	1	NA	NA	NA	8763	NM_009373	21817	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.005000	0.368159	
mm_135048.1	chr16	33251213	33251413	-	1	NA	NA	NA	-143	NM_080557	69150	Mm.28196	NM_080557	ENSMUSG00000022808	Snx4	1810036H14Rik|AI037066	sorting nexin 4	protein-coding	0.060000	0.641791	
mm_2069.1	chr1	87625421	87625621	+	1	NA	NA	NA	5209	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.005000	0.477612	
mm_9923.1	chr1	189687952	189688152	-	1	NA	NA	NA	34	NM_001081363	108000	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0.100000	0.711443	
mm_92313.1	chr10	75317469	75317669	-	1	NA	NA	NA	-31	NM_001331095	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.115000	0.651741	-32(CGCCCTAAAGGG,-,0.00)
mm_120021.1	chr14	55764608	55764808	+	1	NA	NA	NA	-1254	NM_008519	16995	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	0.000000	0.497512	
mm_57037.1	chr6	122339382	122339582	-	1	NA	NA	NA	175	NM_001042623	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.120000	0.716418	
mm_168166.1	chr10	52115165	52115365	-	1	NA	NA	NA	79979	NM_011282	19886	Mm.236163	NM_011282	ENSMUSG00000019893	Ros1	Ros-1|c-ros	Ros1 proto-oncogene	protein-coding	0.055000	0.562189	-62(GTTTTTATAGCT,+,0.00)
mm_115571.1	chr13	10360856	10361056	-	1	NA	NA	NA	-153	NM_033269	12671	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.045000	0.616915	
mm_2919.1	chr1	132023783	132023983	+	1	NA	NA	NA	16278	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.000000	0.363184	
mm_22896.1	chr3	30793038	30793238	+	1	NA	NA	NA	262	NM_027016	69276	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	0.115000	0.716418	
mm_12648.1	chr2	74745579	74745779	+	1	NA	NA	NA	-7005	NR_110447	102634401	Mm.235021	NR_110447	ENSMUSG00000085015	LOC102634401	-	uncharacterized LOC102634401	ncRNA	0.005000	0.572139	
mm_154434.1	chrM	675	875	-	1	NA	NA	NA	NA	NA									0.010000	0.333333	89(CGGTATATAGGC,-,0.00)
mm_123895.1	chr14	73048985	73049185	-	1	NA	NA	NA	29	NM_133720	70086	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	0.025000	0.467662	
mm_146771.1	chr18	20002278	20002478	-	1	NA	NA	NA	-281	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding	0.030000	0.527363	
mm_58011.1	chr6	136518968	136519168	-	1	NA	NA	NA	217	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.100000	0.631841	
mm_53314.1	chr6	129182904	129183104	+	1	NA	NA	NA	2389	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.000000	0.348259	
mm_12953.1	chr2	89916868	89917068	+	1	NA	NA	NA	-12843	NM_146978	258980	Mm.223370	NM_146978	ENSMUSG00000049149	Olfr1258	MOR232-3	olfactory receptor 1258	protein-coding	0.020000	0.383085	
mm_147270.1	chr18	38929086	38929286	-	1	NA	NA	NA	-10487	NM_010197	14164	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0.020000	0.557214	
mm_39027.1	chr4	152132306	152132506	-	1	NA	NA	NA	-3481	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.035000	0.606965	
mm_99908.1	chr11	109764167	109764367	+	1	NA	NA	NA	-42011	NM_153782	208659	Mm.208662	NM_153782	ENSMUSG00000020614	Fam20a	AI606893	family with sequence similarity 20, member A	protein-coding	0.005000	0.308458	
mm_82366.1	chr9	14574505	14574705	-	1	NA	NA	NA	40395	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.020000	0.452736	
mm_15164.1	chr2	154011263	154011463	+	1	NA	NA	NA	3087	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.015000	0.467662	44(CTCCATTAAAAC,-,0.00)
mm_137660.1	chr17	28691332	28691532	+	1	NA	NA	NA	90	NM_001168514	26416	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.120000	0.706468	
mm_63454.1	chr7	127519988	127520188	+	1	NA	NA	NA	-7219	NR_024331	629159	Mm.256720	NR_024331	ENSMUSG00000101225	1700008J07Rik	AW048743	RIKEN cDNA 1700008J07 gene	ncRNA	0.005000	0.368159	
mm_54710.1	chr6	39725225	39725425	-	1	NA	NA	NA	138	NM_139294	109880	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	0.180000	0.845771	
mm_153367.1	chr19	40271718	40271918	-	1	NA	NA	NA	-202	NM_016861	54132	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	0.055000	0.552239	-95(CCTCTTAAACGG,+,0.00)
mm_26915.1	chr3	20150509	20150709	-	1	NA	NA	NA	4507	NM_013755	27357	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|Gyg1	glycogenin	protein-coding	0.005000	0.427861	
mm_63526.1	chr7	127912597	127912797	+	1	NA	NA	NA	180	NM_026370	67773	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|Myst1	K(lysine) acetyltransferase 8	protein-coding	0.105000	0.711443	
mm_46070.1	chr5	92322637	92322837	-	1	NA	NA	NA	5342	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.005000	0.412935	
mm_21641.1	chr2	164333308	164333508	-	1	NA	NA	NA	643	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.050000	0.507463	
mm_67695.1	chr7	89518039	89518239	-	1	NA	NA	NA	-553	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.040000	0.582090	
mm_50741.1	chr6	52727111	52727311	+	1	NA	NA	NA	13482	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.005000	0.318408	
mm_170385.1	chr18	60375929	60376129	+	1	NA	NA	NA	0	NM_021792	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.000000	0.477612	
mm_154582.1	chrX	7572569	7572769	+	1	NA	NA	NA	-931	NR_029473	78185	Mm.160055	NR_029473	ENSMUSG00000039545	Ppp1r3fos	4930524L23Rik	protein phosphatase 1, regulatory subunit 3F, opposite strand	ncRNA	0.030000	0.547264	
mm_51259.1	chr6	72097280	72097480	+	1	NA	NA	NA	-228	NM_001035228	20454	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.065000	0.601990	
mm_41352.1	chr5	90504275	90504475	+	1	NA	NA	NA	13661	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.020000	0.348259	
mm_141585.1	chr17	32403431	32403631	-	1	NA	NA	NA	50	NM_178785	320484	Mm.122284	NM_178785	ENSMUSG00000052142	Rasal3	A430107D22Rik	RAS protein activator like 3	protein-coding	0.025000	0.577114	
mm_82506.1	chr9	20480812	20481012	-	1	NA	NA	NA	11834	NM_146221	235028	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	0.005000	0.383085	
mm_27362.1	chr3	50431110	50431310	-	1	NA	NA	NA	12403	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.015000	0.388060	
mm_18716.1	chr2	72442836	72443036	-	1	NA	NA	NA	-33283	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.020000	0.487562	
mm_105695.1	chr11	107914923	107915123	-	1	NA	NA	NA	32	NM_001199301	140723	Mm.87663	NM_080644	ENSMUSG00000040373	Cacng5	-	calcium channel, voltage-dependent, gamma subunit 5	protein-coding	0.105000	0.716418	
mm_80728.1	chr9	92608070	92608270	+	1	NA	NA	NA	-65301	NR_029474	78575	Mm.407669	NR_029474	ENSMUSG00000103622	B430319G15Rik	D530025C14Rik	RIKEN cDNA B430319G15 gene	ncRNA	0.000000	0.368159	
mm_53559.1	chr6	136954425	136954625	+	1	NA	NA	NA	2	NM_023898	78600	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	0.025000	0.467662	
mm_52657.1	chr6	117879873	117880073	+	1	NA	NA	NA	16896	NM_001001792	22685	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0.070000	0.552239	
mm_31065.1	chr4	41316744	41316944	+	1	NA	NA	NA	-1943	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.005000	0.527363	
mm_56107.1	chr6	87496206	87496406	-	1	NA	NA	NA	21	NR_104483	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.030000	0.601990	
mm_49319.1	chr6	18848603	18848803	+	1	NA	NA	NA	68	NM_133939	76522	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	0.115000	0.656716	
mm_66648.1	chr7	45694090	45694290	-	1	NA	NA	NA	212	NM_001271578	56546	Mm.56914	NM_019934	ENSMUSG00000040364	Sec1	Fut10|Fut3	secretory blood group 1	protein-coding	0.110000	0.706468	
mm_52024.1	chr6	94699119	94699319	+	1	NA	NA	NA	926	NM_008377	16206	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.045000	0.562189	
mm_29272.1	chr3	107517681	107517881	-	1	NA	NA	NA	237	NM_001293689	229706	Mm.212867	NM_172271	ENSMUSG00000027894	Slc6a17	D130012J15Rik|Ntt4	solute carrier family 6 (neurotransmitter transporter), member 17	protein-coding	0.110000	0.751244	
mm_36865.1	chr4	107058770	107058970	-	1	NA	NA	NA	7996	NM_025500	56280	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0.015000	0.517413	
mm_127563.1	chr15	102203945	102204145	+	1	NA	NA	NA	400	NM_001289691	68744	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0.175000	0.815920	
mm_111494.1	chr12	99172320	99172520	-	1	NA	NA	NA	-9612	NR_038130	67639	Mm.87374	NR_038130		4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.015000	0.402985	-67(GTCTTTAAAAAA,-,0.00)
mm_39578.1	chr5	23434445	23434645	+	1	NA	NA	NA	116	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.105000	0.671642	
mm_62676.1	chr7	109519091	109519291	+	1	NA	NA	NA	-4	NM_011975	26451	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	0.080000	0.651741	
mm_30036.1	chr3	135691314	135691514	-	1	NA	NA	NA	133	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.135000	0.731343	
mm_150709.1	chr19	42550838	42551038	+	1	NA	NA	NA	32133	NM_177464	52013	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	0.015000	0.373134	
mm_156929.1	chrX	169320522	169320722	+	1	NA	NA	NA	-250	NM_001331049	15159	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	0.115000	0.651741	
mm_58063.1	chr6	136872640	136872840	-	1	NA	NA	NA	3083	NM_008597	17313	Mm.243085	NM_008597	ENSMUSG00000030218	Mgp	Mglap	matrix Gla protein	protein-coding	0.060000	0.522388	
mm_39804.1	chr5	30623196	30623396	+	1	NA	NA	NA	-24640	NR_049199	100885838		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.005000	0.507463	
mm_14785.1	chr2	145860068	145860268	+	1	NA	NA	NA	-43073	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.035000	0.547264	-51(CCTTATAAATGG,+,0.00),-51(CCTTATAAATGG,-,0.00),-33(TTCTATAAAAAC,-,0.00)
mm_4793.1	chr1	184728855	184729055	+	1	NA	NA	NA	3538	NM_008250	15284	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.015000	0.512438	
mm_169533.1	chr14	92603180	92603380	-	1	NA	NA	NA	1285608	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.010000	0.467662	
mm_94998.1	chr11	31872145	31872345	+	1	NA	NA	NA	1305	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.015000	0.363184	
mm_84175.1	chr9	59949232	59949432	-	1	NA	NA	NA	747	NM_013708	23958	Mm.103641	NM_013708	ENSMUSG00000032292	Nr2e3	A930035N01Rik|PNR|RNR|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding	0.025000	0.587065	
mm_65120.1	chr7	19404006	19404206	-	1	NA	NA	NA	-2	NM_001286039	232943	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	0.120000	0.771144	
mm_45188.1	chr5	52115727	52115927	-	1	NA	NA	NA	20190	NR_105845	102466648		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0.155000	0.716418	
mm_56653.1	chr6	113434407	113434607	-	1	NA	NA	NA	1248	NM_178373	14311	Mm.10026	NM_178373	ENSMUSG00000030278	Cidec	CIDE-3|Fsp27	cell death-inducing DFFA-like effector c	protein-coding	0.030000	0.547264	
mm_155435.1	chrX	73494537	73494737	+	1	NA	NA	NA	-8449	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.005000	0.532338	
mm_16787.1	chr2	10028866	10029066	-	1	NA	NA	NA	19643	NM_027748	209361	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0.005000	0.402985	
mm_102765.1	chr11	67965518	67965718	-	1	NA	NA	NA	24	NM_027963	71860	Mm.441823	NM_027963	ENSMUSG00000020904	Cfap52	1700019F09Rik|4933417B11Rik|WDRPUH|Wdr16	cilia and flagella associated protein 52	protein-coding	0.035000	0.527363	
mm_28386.1	chr3	90009197	90009397	-	1	NA	NA	NA	1913	NR_106129	102465771		NR_106129	ENSMUSG00000098397	Mir7669	Gm27996|mmu-mir-7669	microRNA 7669	ncRNA	0.040000	0.572139	
mm_128016.1	chr15	22714791	22714991	-	1	NA	NA	NA	93	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding	0.030000	0.457711	
mm_68947.1	chr7	126562550	126562750	-	1	NA	NA	NA	3716	NM_146200	56347	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.005000	0.472637	74(TTCCTTAAAAAG,-,0.00),76(CCTTAAAAAGTA,+,0.00)
mm_125398.1	chr15	41447325	41447525	+	1	NA	NA	NA	-57	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.155000	0.776119	
mm_105815.1	chr11	111800775	111800975	-	1	NA	NA	NA	734711	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.000000	0.452736	
mm_53969.1	chr6	6104681	6104881	-	1	NA	NA	NA	112392	NM_015829	50799	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	0.000000	0.318408	
mm_81592.1	chr9	110476989	110477189	+	1	NA	NA	NA	95	NM_001163569	16578	Mm.42170	NM_010628	ENSMUSG00000032489	Kif9	-	kinesin family member 9	protein-coding	0.055000	0.592040	
mm_30476.1	chr3	154711225	154711425	-	1	NA	NA	NA	192	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.010000	0.467662	
mm_92991.1	chr10	86702136	86702336	-	1	NA	NA	NA	3208	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.000000	0.263682	
mm_108736.1	chr12	88360544	88360744	+	1	NA	NA	NA	130	NM_001277297	72113	Mm.181387	NM_028105	ENSMUSG00000021044	Adck1	2610005A10Rik	aarF domain containing kinase 1	protein-coding	0.085000	0.646766	
mm_124518.1	chr14	121965034	121965234	-	1	NA	NA	NA	59	NM_183031	321019	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.030000	0.482587	-32(CACCATAAAAGG,-,0.00),-30(CCATAAAAGGAC,+,0.00),-7(CACTCTTAAAGC,-,0.00)
mm_81689.1	chr9	111146610	111146810	+	1	NA	NA	NA	28599	NM_001164838	71268	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.020000	0.562189	
mm_12141.1	chr2	61776577	61776777	+	1	NA	NA	NA	-27776	NM_009322	21375	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.010000	0.417910	
mm_61286.1	chr7	67494965	67495165	+	1	NA	NA	NA	-122207	NM_001291195	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.015000	0.542289	
mm_118757.1	chr14	22371850	22372050	+	1	NA	NA	NA	170848	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.010000	0.378109	
mm_90954.1	chr10	13193026	13193226	-	1	NA	NA	NA	11	NM_181470	353258	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	0.105000	0.691542	
mm_121625.1	chr14	8317500	8317700	-	1	NA	NA	NA	-7824	NM_183187	268709	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0.080000	0.671642	
mm_59389.1	chr7	26386809	26387009	+	1	NA	NA	NA	7334	NM_001042612	330490	Mm.212174	NM_194062	ENSMUSG00000040614	Nlrp9c	AA636537|BB062542|Nalp-zeta|Nalp9c	NLR family, pyrin domain containing 9C	protein-coding	0.010000	0.532338	
mm_102563.1	chr11	61488023	61488223	-	1	NA	NA	NA	2679	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.010000	0.572139	
mm_105676.1	chr11	107470668	107470868	-	1	NA	NA	NA	-48	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.095000	0.681592	
mm_111812.1	chr12	105523380	105523580	-	1	NA	NA	NA	10047	NR_102381	104932	Mm.274150	NR_102381		AU015791	-	expressed sequence AU015791	ncRNA	0.025000	0.522388	
mm_11583.1	chr2	33130794	33130994	+	1	NA	NA	NA	-43690	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.050000	0.592040	
mm_85883.1	chr9	111031000	111031200	-	1	NA	NA	NA	11808	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.000000	0.537313	
mm_7822.1	chr1	132010507	132010707	-	1	NA	NA	NA	3002	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.005000	0.537313	
mm_167800.1	chr9	123927782	123927982	-	1	NA	NA	NA	40810	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.010000	0.497512	
mm_96889.1	chr11	70436230	70436430	+	1	NA	NA	NA	-1925	NR_106064	102465670		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.010000	0.507463	
mm_156670.1	chrX	159210412	159210612	+	1	NA	NA	NA	-45270	NM_148945	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	0.020000	0.462687	
mm_125490.1	chr15	54752900	54753100	+	1	NA	NA	NA	7072	NM_010930	18133	Mm.5167	NM_010930	ENSMUSG00000037362	Nov	C130088N23Rik|CCN3	nephroblastoma overexpressed gene	protein-coding	0.000000	0.278607	
mm_70421.1	chr8	11464517	11464717	+	1	NA	NA	NA	-13312	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.015000	0.477612	
mm_49264.1	chr6	17464041	17464241	+	1	NA	NA	NA	184	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.085000	0.666667	
mm_20038.1	chr2	119898257	119898457	-	1	NA	NA	NA	1129	NM_013720	29808	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	0.040000	0.552239	
mm_96645.1	chr11	69339888	69340088	+	1	NA	NA	NA	-781	NR_027827	80515	Mm.5324	NM_020591	ENSMUSG00000043419	Chd3os	2310043C11Rik|A030009H04Rik|AA589459|AB041807|MNCb-2875|RNF21	chromodomain helicase DNA binding protein 3, opposite strand	ncRNA	0.005000	0.507463	-34(ATGTATAAAAAG,-,0.00)
mm_173357.1	chrY	90819226	90819426	+	1	NA	NA	NA	20080	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.040000	0.582090	
mm_623.1	chr1	40224914	40225114	+	1	NA	NA	NA	-66	NM_008362	16177	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.020000	0.492537	
mm_63557.1	chr7	128081540	128081740	+	1	NA	NA	NA	19000	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.035000	0.517413	
mm_11523.1	chr2	32621441	32621641	+	1	NA	NA	NA	-217	NM_001198790	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.025000	0.557214	
mm_10403.1	chr2	13578334	13578534	+	1	NA	NA	NA	4123	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.020000	0.388060	
mm_64137.1	chr7	141194965	141195165	+	1	NA	NA	NA	-78	NM_153777	70552	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	0.095000	0.601990	
mm_54069.1	chr6	14754623	14754823	-	1	NA	NA	NA	551	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	0.030000	0.407960	
mm_76858.1	chr8	105413400	105413600	-	1	NA	NA	NA	2	NM_177791	279499	Mm.67628	NM_177791	ENSMUSG00000051648	Kctd19	4922504H04Rik	potassium channel tetramerisation domain containing 19	protein-coding	0.085000	0.671642	
mm_63421.1	chr7	127471371	127471571	+	1	NA	NA	NA	-143	NM_145589	233895	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.035000	0.532338	
mm_20363.1	chr2	128318784	128318984	-	1	NA	NA	NA	110467	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.000000	0.353234	
mm_82156.1	chr9	123781092	123781292	+	1	NA	NA	NA	13981	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.000000	0.517413	
mm_127106.1	chr15	97843586	97843786	+	1	NA	NA	NA	816	NM_001204279	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.015000	0.492537	
mm_139833.1	chr17	69156410	69156610	+	1	NA	NA	NA	-300	NM_013813	13823	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.010000	0.522388	14(ATCTCTAAAGGG,-,0.00)
mm_90324.1	chr10	127070298	127070498	+	1	NA	NA	NA	-83	NR_040660	100504703	Mm.387029	NR_040660		A730063M14Rik	-	RIKEN cDNA A730063M14 gene	ncRNA	0.025000	0.457711	
mm_49342.1	chr6	21949559	21949759	+	1	NA	NA	NA	44	NM_023626	71777	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0.080000	0.547264	
mm_35896.1	chr4	49549431	49549631	-	1	NA	NA	NA	15	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.015000	0.467662	0(GGCTATAAAAAC,-,0.00)
mm_83313.1	chr9	44113399	44113599	-	1	NA	NA	NA	-448	NM_153762	213211	Mm.392032	NM_153762	ENSMUSG00000053128	Rnf26	8030450I18Rik	ring finger protein 26	protein-coding	0.080000	0.616915	
mm_70826.1	chr8	23140014	23140214	+	1	NA	NA	NA	1084	NM_001310437	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.020000	0.532338	
mm_7030.1	chr1	87099350	87099550	-	1	NA	NA	NA	2156	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.025000	0.542289	
mm_115785.1	chr13	19336940	19337140	-	1	NA	NA	NA	58773	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.542289	
mm_94847.1	chr11	23769716	23769916	+	1	NA	NA	NA	1154	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.015000	0.462687	
mm_8432.1	chr1	152615064	152615264	-	1	NA	NA	NA	10053	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.010000	0.492537	
mm_166545.1	chr6	35882433	35882633	+	1	NA	NA	NA	-342645	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.383085	87(GGATTTAAAAGG,-,0.00)
mm_1984.1	chr1	87067910	87068110	+	1	NA	NA	NA	21918	NM_007433	11650	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0.000000	0.606965	
mm_102192.1	chr11	54310040	54310240	-	1	NA	NA	NA	-4763	NM_001033599	216739	Mm.267478	NM_144823	ENSMUSG00000020333	Acsl6	A330035H04Rik|AW050338|Facl6|LACS|Lacsl|mKIAA0837	acyl-CoA synthetase long-chain family member 6	protein-coding	0.020000	0.542289	
mm_166601.1	chr6	67533222	67533422	-	1	NA	NA	NA	2500	NM_020047	56753	Mm.439913	NM_020047	ENSMUSG00000051397	Tacstd2	C80403|EGP-1|GA733-1|Ly97|TROP2	tumor-associated calcium signal transducer 2	protein-coding	0.055000	0.597015	
mm_128363.1	chr15	41830667	41830867	-	1	NA	NA	NA	-191	NM_001130164	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.015000	0.462687	
mm_62493.1	chr7	101969555	101969755	+	1	NA	NA	NA	-188	NM_133947	101706	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	0.020000	0.507463	
mm_144317.1	chr18	12651875	12652075	+	1	NA	NA	NA	8442	NM_028341	72747	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.000000	0.238806	
mm_439.1	chr1	34750518	34750718	+	1	NA	NA	NA	-51104	NM_183019	226970	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef|ENSMUSG00000070955	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0.185000	0.850746	
mm_45881.1	chr5	88328365	88328565	-	1	NA	NA	NA	11153	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.000000	0.457711	
mm_132905.1	chr16	48872583	48872783	+	1	NA	NA	NA	75	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.005000	0.432836	-35(GTGTATTAAAGC,-,0.00)
mm_171255.1	chr3	81689457	81689657	+	1	NA	NA	NA	-112468	NR_138586	320566	Mm.208417	NR_138586	ENSMUSG00000103695	A830029E22Rik	-	RIKEN cDNA A830029E22 gene	ncRNA	0.035000	0.467662	
mm_19316.1	chr2	90556195	90556395	-	1	NA	NA	NA	24352	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.015000	0.378109	-40(GTGCATATAAAG,-,0.00),-38(GCATATAAAGAC,+,0.00),-20(ACCCATAAATGG,-,0.00)
mm_108180.1	chr12	76417520	76417720	+	1	NA	NA	NA	21	NM_001163103	210762	Mm.292354	NM_001163103	ENSMUSG00000052221	Ppp1r36	Gm70	protein phosphatase 1, regulatory subunit 36	protein-coding	0.090000	0.666667	
mm_143548.1	chr17	74017258	74017458	-	1	NA	NA	NA	30558	NM_053188	94224	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.000000	0.353234	
mm_134160.1	chr16	10791537	10791737	-	1	NA	NA	NA	468	NM_008933	19119	Mm.325769	NM_008933	ENSMUSG00000038015	Prm2	AI528784|Prm-2	protamine 2	protein-coding	0.015000	0.597015	
mm_96788.1	chr11	69965575	69965775	+	1	NA	NA	NA	254	NM_016887	53624	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	0.085000	0.601990	
mm_35897.1	chr4	49593795	49593995	-	1	NA	NA	NA	3975	NM_025944	67063	Mm.490285	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	0.025000	0.447761	-77(GTTTATATAAAG,-,0.00)
mm_23544.1	chr3	61364494	61364694	+	1	NA	NA	NA	87	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.125000	0.716418	
mm_89902.1	chr10	111164667	111164867	+	1	NA	NA	NA	-35	NM_001003717	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.110000	0.741294	
mm_156177.1	chrX	130339026	130339226	+	1	NA	NA	NA	589384	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.010000	0.432836	-55(CCTTATATGTGA,+,0.00)
mm_90950.1	chr10	13177897	13178097	-	1	NA	NA	NA	26	NM_029172	75122	Mm.159433	NM_029172	ENSMUSG00000019815	Zc2hc1b	4930519B02Rik|Fam164b	zinc finger, C2HC-type containing 1B	protein-coding	0.000000	0.447761	
mm_117676.1	chr13	93674187	93674387	-	1	NA	NA	NA	15	NM_022884	64918	Mm.29981	NM_022884	ENSMUSG00000042118	Bhmt2	C81077|D13Ucla2	betaine-homocysteine methyltransferase 2	protein-coding	0.075000	0.656716	
mm_1816.1	chr1	82316569	82316769	+	1	NA	NA	NA	90	NM_029777	76867	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	0.125000	0.656716	
mm_126977.1	chr15	93435826	93436026	+	1	NA	NA	NA	37462	NM_001285863	223828	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.030000	0.502488	
mm_105231.1	chr11	102316569	102316769	-	1	NA	NA	NA	618	NM_001044383	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.060000	0.651741	
mm_2795.1	chr1	130851439	130851639	+	1	NA	NA	NA	-14238	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.010000	0.442786	
mm_40098.1	chr5	34573668	34573868	+	1	NA	NA	NA	104	NM_001331086	11518	Mm.289106	NM_013457	ENSMUSG00000029106	Add1	AI256389	adducin 1 (alpha)	protein-coding	0.120000	0.766169	
mm_130810.1	chr15	101734308	101734508	-	1	NA	NA	NA	8689	NM_019956	56735	Mm.358677	NM_019956	ENSMUSG00000051879	Krt71	AA589543|Ca|Cal4|Cu|Krt2-6g|mK6irs|mK6irs1	keratin 71	protein-coding	0.010000	0.572139	
mm_172478.1	chr7	48742047	48742247	-	1	NA	NA	NA	-46856	NM_028031	243983	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	0.020000	0.572139	
mm_47074.1	chr5	116591688	116591888	-	1	NA	NA	NA	29	NM_026886	68955	Mm.146779	NM_026886	ENSMUSG00000063919	Srrm4	1500001A10Rik|B230202K19Rik|bv|mKIAA1853|nSR100	serine/arginine repetitive matrix 4	protein-coding	0.105000	0.651741	
mm_140391.1	chr17	87446048	87446248	+	1	NA	NA	NA	787	NM_007589	12314	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017	calmodulin 2	protein-coding	0.120000	0.800995	
mm_76724.1	chr8	94876195	94876395	-	1	NA	NA	NA	17	NM_053246	114255	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	0.135000	0.741294	
mm_902.1	chr1	53784385	53784585	+	1	NA	NA	NA	730	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.030000	0.477612	
mm_146020.1	chr18	69519502	69519702	+	1	NA	NA	NA	173881	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.015000	0.398010	
mm_130016.1	chr15	88687887	88688087	-	1	NA	NA	NA	46232	NM_001033274	223770	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	0.025000	0.398010	-7(TTTTTTAAAGAC,+,0.00)
mm_83000.1	chr9	36726048	36726248	-	1	NA	NA	NA	510	NM_007691	12649	Mm.16753	NM_007691	ENSMUSG00000032113	Chek1	C85740|Chk1|rad27	checkpoint kinase 1	protein-coding	0.040000	0.562189	
mm_77066.1	chr8	109961822	109962022	-	1	NA	NA	NA	283	NM_212447	73608	Mm.86833	NM_028584	ENSMUSG00000001672	Marveld3	1810006A16Rik|AI642133|Marvd3|Mrvldc3	MARVEL (membrane-associating) domain containing 3	protein-coding	0.135000	0.686567	
mm_2149.1	chr1	88138268	88138468	+	1	NA	NA	NA	3559	NM_145079	94284	Mm.300095	NM_145079	ENSMUSG00000054545	Ugt1a6a	UDPGT|UDPGT 1-6|UGT1-06|UGT1.6|Ugt1a6|Ugt1a7	UDP glucuronosyltransferase 1 family, polypeptide A6A	protein-coding	0.000000	0.482587	
mm_63124.1	chr7	122969839	122970039	+	1	NA	NA	NA	520	NR_045614	73951	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.135000	0.731343	
mm_48359.1	chr5	139382835	139383035	-	1	NA	NA	NA	2268	NM_030258	80290	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|PGR8	G protein-coupled receptor 146	protein-coding	0.015000	0.552239	
mm_33689.1	chr4	133417116	133417316	+	1	NA	NA	NA	47440	NR_039582	100628620		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	0.020000	0.582090	
mm_115650.1	chr13	12331982	12332182	-	1	NA	NA	NA	8650	NM_033268	11472	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	0.010000	0.477612	
mm_58568.1	chr7	4792992	4793192	+	1	NA	NA	NA	127	NM_009081	19943	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	0.065000	0.646766	
mm_171550.1	chr4	147125073	147125273	+	1	NA	NA	NA	-50693	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.085000	0.731343	
mm_144738.1	chr18	35562643	35562843	+	1	NA	NA	NA	585	NM_010771	17184	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0.120000	0.666667	
mm_118847.1	chr14	25664287	25664487	+	1	NA	NA	NA	-29783	NM_134084	105675	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.015000	0.582090	-95(GCATTTATGGCC,+,0.00)
mm_35680.1	chr4	43668716	43668916	-	1	NA	NA	NA	43	NM_175517	242408	Mm.440423	NM_175517	ENSMUSG00000043633	Fam221b	4930412F15Rik	family with sequence similarity 221, member B	protein-coding	0.015000	0.527363	
mm_120073.1	chr14	57250018	57250218	+	1	NA	NA	NA	-116507	NM_001010937	14623	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	0.010000	0.512438	
mm_154053.1	chr19	55102996	55103196	-	1	NA	NA	NA	-3649	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.010000	0.422886	
mm_42987.1	chr5	123302320	123302520	+	1	NA	NA	NA	-42028	NM_029850	77045	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0.030000	0.527363	
mm_83451.1	chr9	45064377	45064577	-	1	NA	NA	NA	9296	NM_001093749	319742	Mm.49611	NM_176993	ENSMUSG00000070305	Mpzl3	5430427F17Rik|A530065I17Rik|rc	myelin protein zero-like 3	protein-coding	0.010000	0.442786	
mm_145499.1	chr18	60390736	60390936	+	1	NA	NA	NA	14807	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.417910	
mm_65885.1	chr7	29853547	29853747	-	1	NA	NA	NA	1	NM_173738	233057	Mm.296864	NM_173738	ENSMUSG00000050855	Zfp940	-	zinc finger protein 940	protein-coding	0.055000	0.587065	
mm_12262.1	chr2	68959726	68959926	+	1	NA	NA	NA	98385	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.010000	0.452736	
mm_71616.1	chr8	57320907	57321107	+	1	NA	NA	NA	24	NM_010402	15111	Mm.430844	NM_010402	ENSMUSG00000038193	Hand2	AI225906|AI661148|Ehand2|Hed|Th2|Thing2|bHLHa26|dHAND	heart and neural crest derivatives expressed transcript 2	protein-coding	0.090000	0.641791	
mm_52564.1	chr6	116226873	116227073	+	1	NA	NA	NA	18940	NM_026585	28006	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	0.000000	0.462687	-82(CACTTTATAAGG,-,0.00),-80(CTTTATAAGGAG,+,0.00)
mm_98705.1	chr11	96303986	96304186	+	1	NA	NA	NA	574	NM_008268	15413	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	0.070000	0.621891	
mm_47356.1	chr5	122779256	122779456	-	1	NA	NA	NA	54	NM_001199676	207565	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.180000	0.800995	
mm_78097.1	chr9	18478292	18478492	+	1	NA	NA	NA	-3	NM_028557	73503	Mm.160088	NM_028557	ENSMUSG00000038691	Mbd3l1	1700070G05Rik|1700095H13Rik|Mbd3l	methyl-CpG binding domain protein 3-like 1	protein-coding	0.010000	0.417910	
mm_31846.1	chr4	74258706	74258906	+	1	NA	NA	NA	6927	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.005000	0.502488	
mm_37310.1	chr4	119294429	119294629	-	1	NA	NA	NA	-16	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.120000	0.681592	
mm_68117.1	chr7	102100143	102100343	-	1	NA	NA	NA	-14	NM_007491	11875	Mm.2816	NM_007491	ENSMUSG00000070424	Art5	ARTC5|Yac-2	ADP-ribosyltransferase 5	protein-coding	0.045000	0.572139	
mm_136677.1	chr17	6256814	6257014	+	1	NA	NA	NA	-13556	NM_001033178	77106	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	0.125000	0.736318	
mm_140277.1	chr17	84957906	84958106	+	1	NA	NA	NA	5	NM_001159496	19043	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.100000	0.731343	
mm_152295.1	chr19	9083619	9083819	-	1	NA	NA	NA	4237	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.015000	0.472637	
mm_141265.1	chr17	27623702	27623902	-	1	NA	NA	NA	-350	NM_019837	56409	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0.070000	0.641791	
mm_33399.1	chr4	129821150	129821350	+	1	NA	NA	NA	542	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.050000	0.442786	
mm_93741.1	chr10	120142708	120142908	-	1	NA	NA	NA	-29843	NM_080446	117599	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.015000	0.522388	
mm_7562.1	chr1	124723279	124723479	-	1	NA	NA	NA	-677820	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.437811	-79(CCTTTTAGATGC,+,0.00)
mm_38871.1	chr4	149664793	149664993	-	1	NA	NA	NA	-1577	NM_001164052	18707	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol 3-kinase catalytic delta polypeptide	protein-coding	0.010000	0.427861	
mm_92538.1	chr10	79637775	79637975	-	1	NA	NA	NA	43	NM_001024539	216148	Mm.39424	NM_001024539	ENSMUSG00000020312	Shc2	6720466E06|SCK|ShcB|Sli	SHC (Src homology 2 domain containing) transforming protein 2	protein-coding	0.140000	0.781095	
mm_26340.1	chr3	142547117	142547317	+	1	NA	NA	NA	-12835	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.005000	0.502488	
mm_130773.1	chr15	101438696	101438896	-	1	NA	NA	NA	8	NM_001003668	406219	Mm.347934	NM_001003668	ENSMUSG00000047641	Krt87	K83|K87|Krt2-25|Krt83	keratin 87	protein-coding	0.080000	0.646766	
mm_118834.1	chr14	25607704	25607904	+	1	NA	NA	NA	4291	NM_001309430	100188919	Mm.473810	NM_001309430		Israa	-	immune system released activating agent	protein-coding	0.130000	0.721393	
mm_106530.1	chr11	120573125	120573325	-	1	NA	NA	NA	-289	NM_011032	18453	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.085000	0.606965	
mm_62817.1	chr7	113295399	113295599	+	1	NA	NA	NA	73840	NM_133700	68815	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0.030000	0.487562	
mm_44295.1	chr5	8622711	8622911	-	1	NA	NA	NA	141	NM_001347311	242819	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0.145000	0.701493	
mm_114725.1	chr13	83715237	83715437	+	1	NA	NA	NA	-12769	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.030000	0.482587	-32(GCTTATATAGAC,+,0.00)
mm_2935.1	chr1	132298569	132298769	+	1	NA	NA	NA	43	NM_144810	213417	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0.090000	0.741294	
mm_70080.1	chr7	142653803	142654003	-	1	NA	NA	NA	1093	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.070000	0.611940	
mm_105302.1	chr11	102578977	102579177	-	1	NA	NA	NA	42	NR_040286	100040792	Mm.277966	NR_040286	ENSMUSG00000078640	Gm11627	OTTMUSG00000002879	predicted gene 11627	ncRNA	0.040000	0.597015	
mm_14177.1	chr2	126737928	126738128	+	1	NA	NA	NA	30700	NM_019729	84092	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	0.015000	0.457711	
mm_156145.1	chrX	129774118	129774318	+	1	NA	NA	NA	24476	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.015000	0.383085	
mm_153220.1	chr19	34811893	34812093	-	1	NA	NA	NA	8780	NR_029783	723826		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	0.010000	0.353234	
mm_28597.1	chr3	94484122	94484322	-	1	NA	NA	NA	1500	NR_110353	78784	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.050000	0.631841	
mm_29503.1	chr3	116129281	116129481	-	1	NA	NA	NA	307	NM_011693	22329	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0.025000	0.487562	
mm_10593.1	chr2	18676756	18676956	+	1	NA	NA	NA	-162	NM_007552	12151	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	0.070000	0.676617	
mm_79886.1	chr9	65294092	65294292	+	1	NA	NA	NA	-68	NM_001044389	270166	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0.095000	0.656716	
mm_167345.1	chr8	79248477	79248677	-	1	NA	NA	NA	6	NM_026315	67687	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.030000	0.507463	85(GGCTTGAAAAGC,-,0.00)
mm_64804.1	chr7	6691214	6691414	-	1	NA	NA	NA	5118	NM_011769	22776	Mm.89976	NM_011769	ENSMUSG00000002266	Zim1	-	zinc finger, imprinted 1	protein-coding	0.005000	0.487562	
mm_10085.1	chr2	3114123	3114323	+	1	NA	NA	NA	-1	NM_001310434	269233	Mm.23044	NM_001081161	ENSMUSG00000050530	Fam171a1	9630050M13Rik|AA409679	family with sequence similarity 171, member A1	protein-coding	0.010000	0.368159	
mm_30243.1	chr3	146499713	146499913	-	1	NA	NA	NA	-23	NM_010318	14707	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	0.175000	0.810945	
mm_42452.1	chr5	115435000	115435200	+	1	NA	NA	NA	5415	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.015000	0.557214	
mm_21976.1	chr2	167349257	167349457	-	1	NA	NA	NA	-179	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.070000	0.696517	
mm_49915.1	chr6	39044291	39044491	+	1	NA	NA	NA	23195	NR_040523	69986	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.010000	0.507463	
mm_30733.1	chr4	13804048	13804248	+	1	NA	NA	NA	19366	NM_009822	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.010000	0.487562	
mm_27472.1	chr3	52856359	52856559	-	1	NA	NA	NA	71207	NR_040555	622124	Mm.389434	NR_040555	ENSMUSG00000104401	Gm20750	-	predicted gene, 20750	ncRNA	0.015000	0.427861	
mm_12023.1	chr2	58157447	58157647	+	1	NA	NA	NA	2575	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.010000	0.398010	84(CCTTTAATACCC,+,0.00)
mm_170885.1	chr2	22165219	22165419	-	1	NA	NA	NA	-62184	NM_148413	667663	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding	0.060000	0.651741	
mm_111765.1	chr12	104008918	104009118	-	1	NA	NA	NA	4634	NM_027997	71907	Mm.326723	NM_027997	ENSMUSG00000058260	Serpina9	2310014L03Rik|AW049635|Centerin	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9	protein-coding	0.000000	0.507463	
mm_29354.1	chr3	108474925	108475125	-	1	NA	NA	NA	-29766	NM_001204979	20226	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0.020000	0.492537	
mm_37078.1	chr4	116329767	116329967	-	1	NA	NA	NA	107953	NM_181585	18710	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55pik	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	protein-coding	0.005000	0.358209	
mm_28324.1	chr3	89340356	89340556	-	1	NA	NA	NA	-2428	NM_007910	13639	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	0.035000	0.592040	
mm_52665.1	chr6	117906678	117906878	+	1	NA	NA	NA	-4	NM_001166431	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.100000	0.691542	
mm_78994.1	chr9	45403134	45403334	+	1	NA	NA	NA	96	NM_052823	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.005000	0.621891	
mm_81994.1	chr9	121489863	121490063	+	1	NA	NA	NA	5731	NM_001284508	12424	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.025000	0.502488	
mm_53057.1	chr6	124829428	124829628	+	1	NA	NA	NA	-44	NM_013700	22225	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	0.085000	0.611940	
mm_136678.1	chr17	6270382	6270582	+	1	NA	NA	NA	12	NM_001033178	77106	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	0.155000	0.751244	
mm_5544.1	chr1	38603824	38604024	-	1	NA	NA	NA	23320	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.005000	0.447761	
mm_61655.1	chr7	80501081	80501281	+	1	NA	NA	NA	33817	NM_007550	12144	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ helicase-like	protein-coding	0.025000	0.477612	
mm_46103.1	chr5	92347629	92347829	-	1	NA	NA	NA	1160	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.015000	0.492537	
mm_122321.1	chr14	36935489	36935689	-	1	NA	NA	NA	-21	NM_028407	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.020000	0.462687	
mm_97492.1	chr11	78341762	78341962	+	1	NA	NA	NA	-1633	NM_001313985	22248	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.040000	0.587065	
mm_140801.1	chr17	21921196	21921396	-	1	NA	NA	NA	-11370	NM_001256493	70081	Mm.245648	NM_001256493	ENSMUSG00000078546	Zfp995	2210404O09Rik	zinc finger protein 995	protein-coding	0.030000	0.527363	
mm_3581.1	chr1	151132906	151133106	+	1	NA	NA	NA	-5028	NR_038011	402734	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.015000	0.422886	
mm_58136.1	chr6	141601064	141601264	-	1	NA	NA	NA	-28354	NM_020495	28253	Mm.272223	NM_020495	ENSMUSG00000030236	Slco1b2	7330442B20Rik|OATP-C|OATP2|Oatp1b2|Oatp4|Slc21a10|Slc21a6|lst-1|mlst-1	solute carrier organic anion transporter family, member 1b2	protein-coding	0.030000	0.517413	-36(TTCTTTATAAAG,-,0.00),-34(CTTTATAAAGCG,+,0.00)
mm_21879.1	chr2	166154728	166154928	-	1	NA	NA	NA	457	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.160000	0.815920	
mm_71732.1	chr8	61988385	61988585	+	1	NA	NA	NA	60398	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.005000	0.348259	
mm_148989.1	chr19	8617896	8618096	+	1	NA	NA	NA	0	NM_008766	18399	Mm.30090	NM_008766	ENSMUSG00000024650	Slc22a6	NKT|Oat1|Orctl1|mOat1	solute carrier family 22 (organic anion transporter), member 6	protein-coding	0.020000	0.502488	
mm_143390.1	chr17	69384093	69384293	-	1	NA	NA	NA	215	NM_009547	22666	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0.090000	0.626866	
mm_118841.1	chr14	25649642	25649842	+	1	NA	NA	NA	-44428	NM_134084	105675	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.010000	0.592040	
mm_89305.1	chr10	87915200	87915400	+	1	NA	NA	NA	-51371	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.030000	0.502488	
mm_8841.1	chr1	162692321	162692521	-	1	NA	NA	NA	-34202	NM_001177581	100038657	Mm.416999	NM_001177581	ENSMUSG00000091060	7420461P10Rik	ENSMUSG00000073516	RIKEN cDNA 7420461P10 gene	protein-coding	0.010000	0.462687	
mm_107925.1	chr12	71097543	71097743	+	1	NA	NA	NA	-13785	NM_029227	75266	Mm.402075	NM_029227	ENSMUSG00000021078	Tomm20l	4930553D19Rik	translocase of outer mitochondrial membrane 20 homolog (yeast)-like	protein-coding	0.010000	0.482587	
mm_79733.1	chr9	62342361	62342561	+	1	NA	NA	NA	1118	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.055000	0.601990	
mm_49160.1	chr6	13413267	13413467	+	1	NA	NA	NA	30	NR_038149	69413	Mm.177847	NR_038149	ENSMUSG00000101894	1700016P04Rik	-	RIKEN cDNA 1700016P04 gene	ncRNA	0.015000	0.472637	
mm_124009.1	chr14	76108949	76109149	-	1	NA	NA	NA	1766	NM_026177	67467	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0.005000	0.452736	
mm_77876.1	chr9	6193493	6193693	+	1	NA	NA	NA	24981	NM_027924	71785	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0.000000	0.308458	
mm_156045.1	chrX	108484338	108484538	+	1	NA	NA	NA	349917	NM_001081477	382236	Mm.100112	NM_001081477	ENSMUSG00000063663	Brwd3	Brodl|D030064D06Rik|Gm596	bromodomain and WD repeat domain containing 3	protein-coding	0.005000	0.422886	
mm_152707.1	chr19	17356516	17356716	-	1	NA	NA	NA	51	NM_173442	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.080000	0.686567	
mm_109796.1	chr12	3288726	3288926	-	1	NA	NA	NA	21143	NM_016676	19325	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.005000	0.388060	
mm_138818.1	chr17	39847346	39847546	+	1	NA	NA	NA	4449	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.075000	0.507463	
mm_22169.1	chr2	173119309	173119509	-	1	NA	NA	NA	116	NM_001081387	664799	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris|OTTMUSG00000016680	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.050000	0.636816	
mm_11080.1	chr2	27710202	27710402	+	1	NA	NA	NA	-281	NM_001290482	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.010000	0.547264	
mm_43220.1	chr5	129757533	129757733	+	1	NA	NA	NA	29620	NM_133900	100678	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	0.005000	0.308458	
mm_150504.1	chr19	39022670	39022870	+	1	NA	NA	NA	15751	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.005000	0.358209	
mm_28741.1	chr3	95737783	95737983	-	1	NA	NA	NA	1686	NM_007899	13601	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	0.010000	0.562189	
mm_118140.1	chr13	105054152	105054352	-	1	NA	NA	NA	678	NM_029879	52882	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.125000	0.706468	
mm_9746.1	chr1	180483348	180483548	-	1	NA	NA	NA	56	NM_001081227	381310	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|ENSMUSG00000056615|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.110000	0.766169	
mm_117983.1	chr13	100152717	100152917	-	1	NA	NA	NA	27962	NM_011420	20595	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	0.005000	0.452736	
mm_103913.1	chr11	83588510	83588710	-	1	NA	NA	NA	4477	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.020000	0.412935	12(GATTATAAATGG,-,0.00)
mm_109816.1	chr12	3427671	3427871	-	1	NA	NA	NA	914	NM_172421	75302	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2 (Drosophila)	protein-coding	0.035000	0.497512	
mm_58824.1	chr7	16721857	16722057	+	1	NA	NA	NA	28	NM_011927	26368	Mm.27096	NM_011927	ENSMUSG00000007209	Ceacam9	AA410097|AW545709|Cea-5|Cea5|mmCGM8	carcinoembryonic antigen-related cell adhesion molecule 9	protein-coding	0.000000	0.592040	
mm_97210.1	chr11	75620571	75620771	+	1	NA	NA	NA	-10349	NM_008916	19062	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.020000	0.552239	
mm_32251.1	chr4	102570364	102570564	+	1	NA	NA	NA	404	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.025000	0.537313	
mm_60921.1	chr7	46845740	46845940	+	1	NA	NA	NA	36	NR_102727	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.110000	0.711443	-31(TTCCATTTAAGG,-,0.00),-29(CCATTTAAGGCC,+,0.00)
mm_60259.1	chr7	43797960	43798160	+	1	NA	NA	NA	483	NM_008940	259277	Mm.458023	NM_008940	ENSMUSG00000064023	Klk8	BSP1|NP|Nrpn|Prss19	kallikrein related-peptidase 8	protein-coding	0.025000	0.606965	
mm_76026.1	chr8	75100490	75100690	-	1	NA	NA	NA	6972	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.000000	0.437811	
mm_94080.1	chr10	128492861	128493061	-	1	NA	NA	NA	48	NM_001317220	17904	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.015000	0.507463	-98(CCTTATATGGGC,+,0.00)
mm_49035.1	chr6	4759793	4759993	+	1	NA	NA	NA	12587	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.388060	57(CCTTTAAGGCCG,+,0.00)
mm_22993.1	chr3	34019822	34020022	+	1	NA	NA	NA	-157	NM_001113189	14359	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0.180000	0.830846	
mm_98057.1	chr11	85821865	85822065	+	1	NA	NA	NA	10423	NR_077059	69909	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.020000	0.482587	
mm_104019.1	chr11	85719644	85719844	-	1	NA	NA	NA	0	NR_045875	71489	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.020000	0.407960	
mm_128398.1	chr15	43869874	43870074	-	1	NA	NA	NA	55	NM_175502	239408	Mm.41219	NM_175502	ENSMUSG00000054409	Tmem74	AA549547|B230382K22Rik	transmembrane protein 74	protein-coding	0.070000	0.621891	
mm_80935.1	chr9	102690644	102690844	+	1	NA	NA	NA	-27060	NM_019764	56332	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0.050000	0.542289	
mm_28978.1	chr3	101110188	101110388	-	1	NA	NA	NA	-122	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding	0.145000	0.796020	
mm_23694.1	chr3	68691980	68692180	+	1	NA	NA	NA	656	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.010000	0.542289	
mm_139292.1	chr17	48300412	48300612	+	1	NA	NA	NA	474	NM_001033405	328833	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0.020000	0.611940	
mm_136354.1	chr16	92727116	92727316	-	1	NA	NA	NA	-29887	NM_009821	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.020000	0.378109	
mm_1376.1	chr1	66700756	66700956	+	1	NA	NA	NA	25	NM_001310644	66646	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0.100000	0.696517	
mm_131231.1	chr16	10452726	10452926	+	1	NA	NA	NA	-5476	NM_001013778	383103	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0.025000	0.532338	
mm_160154.1	chr7	43950549	43950749	+	1	NA	NA	NA	-17	NM_008457	16624	Mm.435488	NM_008457	ENSMUSG00000063089	Klk1b8	Klk8|Nrpn|TADG14|kallikrein|mGK-8	kallikrein 1-related peptidase b8	protein-coding	0.000000	0.552239	-32(GGGTTTTTAAAG,-,0.00),-30(GTTTTTAAAGTC,+,0.00)
mm_41394.1	chr5	90771966	90772166	+	1	NA	NA	NA	-369	NM_019932	56744	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	0.025000	0.477612	
mm_139159.1	chr17	47542432	47542632	+	1	NA	NA	NA	37481	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.010000	0.552239	
mm_167901.1	chrX	74085459	74085659	-	1	NA	NA	NA	131	NM_010788	17257	Mm.131408	NM_010788	ENSMUSG00000031393	Mecp2	1500041B07Rik|D630021H01Rik|Mbd5|WBP10	methyl CpG binding protein 2	protein-coding	0.140000	0.751244	
mm_15664.1	chr2	163323254	163323454	+	1	NA	NA	NA	74619	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	0.000000	0.358209	
mm_113128.1	chr13	24614110	24614310	+	1	NA	NA	NA	-396	NM_001286101	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.005000	0.363184	
mm_14110.1	chr2	125791654	125791854	+	1	NA	NA	NA	-8884	NM_177608	70354	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.030000	0.542289	
mm_121272.1	chr14	103513214	103513414	+	1	NA	NA	NA	-27	NM_022886	64929	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.035000	0.537313	
mm_71709.1	chr8	61935979	61936179	+	1	NA	NA	NA	7992	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.020000	0.437811	-44(CTTTCTATAAGG,-,0.00)
mm_125952.1	chr15	76248930	76249130	+	1	NA	NA	NA	839	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.050000	0.587065	
mm_99126.1	chr11	100243161	100243361	+	1	NA	NA	NA	5641	NM_001313958	16666	Mm.422799	NM_008470	ENSMUSG00000053797	Krt16	AI324768|CK-16|K16|Krt1-16	keratin 16	protein-coding	0.055000	0.432836	
mm_147692.1	chr18	60746911	60747111	-	1	NA	NA	NA	-27585	NM_020600	20044	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.005000	0.557214	47(CCCTTTAGACCT,+,0.00)
mm_155602.1	chrX	82948908	82949108	+	1	NA	NA	NA	138	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.010000	0.383085	-61(GCCTTTATAGAA,+,0.00)
mm_102572.1	chr11	61579526	61579726	-	1	NA	NA	NA	61	NM_010148	13855	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0.150000	0.756219	
mm_89215.1	chr10	86778905	86779105	+	1	NA	NA	NA	0	NM_175331	103466	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.095000	0.696517	
mm_141854.1	chr17	34802943	34803143	-	1	NA	NA	NA	1383	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.015000	0.616915	
mm_142885.1	chr17	51831790	51831990	-	1	NA	NA	NA	757	NM_009122	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.080000	0.651741	
mm_86835.1	chr10	21377209	21377409	+	1	NA	NA	NA	9	NM_178713	237320	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0.015000	0.522388	
mm_151768.1	chr19	5272974	5273174	-	1	NA	NA	NA	45	NM_153129	107975	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	0.175000	0.781095	
mm_106968.1	chr12	8937339	8937539	+	1	NA	NA	NA	-10490	NM_010770	17182	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0.005000	0.407960	
mm_56518.1	chr6	99500106	99500306	-	1	NA	NA	NA	20787	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.015000	0.487562	
mm_27804.1	chr3	75956502	75956702	-	1	NA	NA	NA	347	NM_175193	73124	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.095000	0.671642	
mm_127386.1	chr15	101040815	101041015	+	1	NA	NA	NA	13484	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.045000	0.537313	
mm_140472.1	chr17	94608048	94608248	+	1	NA	NA	NA	141744	NM_176917	76781	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding	0.035000	0.522388	
mm_126081.1	chr15	77805849	77806049	+	1	NA	NA	NA	36226	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.020000	0.507463	
mm_92430.1	chr10	77113584	77113784	-	1	NA	NA	NA	21	NM_001109991	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.030000	0.671642	
mm_13367.1	chr2	103456813	103457013	+	1	NA	NA	NA	28240	NM_009804	12359	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0.030000	0.432836	
mm_120104.1	chr14	59200942	59201142	+	1	NA	NA	NA	-186	NM_027764	71330	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	0.095000	0.696517	
mm_62459.1	chr7	101537698	101537898	+	1	NA	NA	NA	18004	NM_007490	11871	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0.025000	0.582090	
mm_54961.1	chr6	48708129	48708329	-	1	NA	NA	NA	15	NM_153175	231931	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	0.015000	0.383085	
mm_48181.1	chr5	137333437	137333637	-	1	NA	NA	NA	45	NM_031406	83704	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	0.065000	0.631841	
mm_150818.1	chr19	44406517	44406717	+	1	NA	NA	NA	1092	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.040000	0.547264	
mm_91814.1	chr10	54061731	54061931	-	1	NA	NA	NA	13965	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.015000	0.542289	
mm_70205.1	chr7	144738459	144738659	-	1	NA	NA	NA	33	NM_178642	101772	Mm.26700	NM_178642	ENSMUSG00000031075	Ano1	Tmem16a	anoctamin 1, calcium activated chloride channel	protein-coding	0.095000	0.726368	
mm_47680.1	chr5	128904159	128904359	-	1	NA	NA	NA	49227	NM_001081388	231760	Mm.233996	NM_001081388	ENSMUSG00000029420	Rimbp2	A930033C01Rik|mKIAA0318	RIMS binding protein 2	protein-coding	0.015000	0.601990	
mm_101641.1	chr11	36432945	36433145	-	1	NA	NA	NA	-452956	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.040000	0.497512	5(CCTTTAAAATCC,+,0.00),15(CCTTTTATGGAG,+,0.00)
mm_76337.1	chr8	84714172	84714372	-	1	NA	NA	NA	12815	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.010000	0.606965	
mm_169304.1	chr14	104071997	104072197	-	1	NA	NA	NA	-44955	NR_045953	73877	Mm.399172	NR_045953		4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.020000	0.467662	
mm_122136.1	chr14	31163343	31163543	-	1	NA	NA	NA	5198	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.030000	0.597015	
mm_78840.1	chr9	44326894	44327094	+	1	NA	NA	NA	149	NM_007875	13478	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	0.090000	0.676617	
mm_160643.1	chr9	109745795	109745995	-	1	NA	NA	NA	194	NM_198674	382109	Mm.246849	NM_198674	ENSMUSG00000059547	Fbxw26	EG382109|Gm5163	F-box and WD-40 domain protein 26	protein-coding	0.000000	0.497512	
mm_33348.1	chr4	129335875	129336075	+	1	NA	NA	NA	-51	NM_025970	67106	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	0.065000	0.582090	-38(CCTTTTAGACCC,+,0.00)
mm_84715.1	chr9	73132928	73133128	-	1	NA	NA	NA	19559	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0.005000	0.477612	
mm_35473.1	chr4	40823630	40823830	-	1	NA	NA	NA	26408	NR_039584	100628614		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.005000	0.537313	
mm_137650.1	chr17	28558206	28558406	+	1	NA	NA	NA	195	NR_105935	102465585		NR_105935	ENSMUSG00000099152	Mir6969	Gm27305|mmu-mir-6969	microRNA 6969	ncRNA	0.035000	0.562189	
mm_38752.1	chr4	147698396	147698596	-	1	NA	NA	NA	4135	NM_001127188	100503584	Mm.276881	NM_001127188	ENSMUSG00000062518	Zfp534	Gm13159|OTTMUSG00000010681	zinc finger protein 534	protein-coding	0.005000	0.512438	
mm_1081.1	chr1	59482846	59483046	+	1	NA	NA	NA	799	NM_008057	14369	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.135000	0.736318	
mm_30298.1	chr3	149077021	149077221	-	1	NA	NA	NA	-122486	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.025000	0.492537	
mm_40222.1	chr5	37242232	37242432	+	1	NA	NA	NA	274	NM_001136058	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.150000	0.721393	
mm_29223.1	chr3	107212723	107212923	-	1	NA	NA	NA	8909	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.492537	
mm_19672.1	chr2	103454227	103454427	-	1	NA	NA	NA	30259	NM_010125	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.005000	0.373134	
mm_163449.1	chr12	87892704	87892904	+	1	NA	NA	NA	-30	NM_001177574	100039052	Mm.431321	NM_001177574		Gm2022	-	predicted pseudogene 2022	protein-coding	0.005000	0.492537	
mm_115591.1	chr13	11827030	11827230	-	1	NA	NA	NA	279815	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.000000	0.343284	-44(CCTTTTAGATAC,+,0.00)
mm_110164.1	chr12	27160385	27160585	-	1	NA	NA	NA	31	NR_045868	636791	Mm.423496	NM_001039248	ENSMUSG00000094002	Gm9866	EG636791|ENSMUSG00000052076	predicted gene 9866	ncRNA	0.025000	0.552239	
mm_47709.1	chr5	129993494	129993694	-	1	NA	NA	NA	9234	NM_010368	110006	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.025000	0.467662	
mm_128758.1	chr15	65786888	65787088	-	1	NA	NA	NA	-53	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0.105000	0.671642	
mm_144796.1	chr18	36013222	36013422	+	1	NA	NA	NA	48492	NR_110349	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.015000	0.537313	
mm_81599.1	chr9	110532524	110532724	+	1	NA	NA	NA	27	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.140000	0.781095	
mm_142488.1	chr17	45756867	45757067	-	1	NA	NA	NA	-23123	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0.005000	0.552239	
mm_3662.1	chr1	153406391	153406591	+	1	NA	NA	NA	7742	NR_033736	626058	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0.030000	0.502488	
mm_2916.1	chr1	132008805	132009005	+	1	NA	NA	NA	1300	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.010000	0.402985	
mm_107912.1	chr12	70994970	70995170	+	1	NA	NA	NA	20447	NM_011184	19167	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0.010000	0.303483	
mm_11855.1	chr2	46519879	46520079	+	1	NA	NA	NA	823374	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.005000	0.358209	-94(CCCTATATGGCT,+,0.00)
mm_159274.1	chr2	164613579	164613779	-	1	NA	NA	NA	-21	NM_001012725	433502	Mm.376157	NM_001012725	ENSMUSG00000070531	Wfdc6b	WAP6b|Wfdc6	WAP four-disulfide core domain 6B	protein-coding	0.025000	0.611940	
mm_92560.1	chr10	79849790	79849990	-	1	NA	NA	NA	-4542	NM_001077363	19205	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0.005000	0.427861	
mm_50905.1	chr6	57581615	57581815	+	1	NA	NA	NA	723	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.015000	0.402985	-63(CGGCATTAAAGC,-,0.00)
mm_47477.1	chr5	123721001	123721201	-	1	NA	NA	NA	-57	NM_027494	70650	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0.050000	0.532338	
mm_69952.1	chr7	142372229	142372429	-	1	NA	NA	NA	-2	NM_001347542	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.130000	0.776119	
mm_147869.1	chr18	64479288	64479488	-	1	NA	NA	NA	9678	NM_007998	14151	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0.005000	0.412935	
mm_35464.1	chr4	40780899	40781099	-	1	NA	NA	NA	-23114	NM_021535	74255	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.025000	0.457711	-34(GGGTATTTAAGG,-,0.00)
mm_122075.1	chr14	30599393	30599593	-	1	NA	NA	NA	10817	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.040000	0.606965	
mm_72273.1	chr8	75099943	75100143	+	1	NA	NA	NA	6425	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.005000	0.537313	
mm_41199.1	chr5	88328140	88328340	+	1	NA	NA	NA	10928	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.015000	0.502488	
mm_134163.1	chr16	10793049	10793249	-	1	NA	NA	NA	-1044	NM_008933	19119	Mm.325769	NM_008933	ENSMUSG00000038015	Prm2	AI528784|Prm-2	protamine 2	protein-coding	0.010000	0.522388	
mm_141628.1	chr17	32917095	32917295	-	1	NA	NA	NA	-108	NM_022434	64385	Mm.486449	NM_022434	ENSMUSG00000024292	Cyp4f14	1300014O15Rik|cyp4f-14	cytochrome P450, family 4, subfamily f, polypeptide 14	protein-coding	0.000000	0.502488	
mm_52825.1	chr6	121356825	121357025	+	1	NA	NA	NA	10228	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.020000	0.547264	
mm_40220.1	chr5	37241989	37242189	+	1	NA	NA	NA	31	NM_001136058	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.170000	0.796020	
mm_38865.1	chr4	149454879	149455079	-	1	NA	NA	NA	-11	NM_022020	63954	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	0.030000	0.611940	
mm_111692.1	chr12	103646895	103647095	-	1	NA	NA	NA	10223	NM_007618	12401	Mm.290079	NM_007618	ENSMUSG00000060807	Serpina6	Cbg	serine (or cysteine) peptidase inhibitor, clade A, member 6	protein-coding	0.005000	0.537313	
mm_107389.1	chr12	33313904	33314104	+	1	NA	NA	NA	11489	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.015000	0.572139	
mm_42718.1	chr5	120511130	120511330	+	1	NA	NA	NA	38	NM_001177594	170756	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.085000	0.681592	
mm_43267.1	chr5	130369388	130369588	+	1	NA	NA	NA	30	NM_181045	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.055000	0.606965	
mm_136901.1	chr17	13015114	13015314	+	1	NA	NA	NA	7375	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.010000	0.412935	
mm_73686.1	chr8	111556454	111556654	+	1	NA	NA	NA	18211	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.010000	0.532338	
mm_47997.1	chr5	136136030	136136230	-	1	NA	NA	NA	-15	NM_001347492	72041	Mm.486605	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	0.100000	0.611940	
mm_148840.1	chr19	6363916	6364116	+	1	NA	NA	NA	326	NR_122118	22668	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.145000	0.736318	
mm_166346.1	chr5	118952229	118952429	+	1	NA	NA	NA	-10	NR_040694	74627	Mm.410828	NR_040694	ENSMUSG00000107144	4930413E15Rik	-	RIKEN cDNA 4930413E15 gene	ncRNA	0.010000	0.522388	
mm_62206.1	chr7	97842809	97843009	+	1	NA	NA	NA	-30	NM_011035	18479	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding	0.055000	0.616915	
mm_33199.1	chr4	126286685	126286885	+	1	NA	NA	NA	-9	NM_199473	329941	Mm.296327	NM_199473	ENSMUSG00000056174	Col8a2	AI429819	collagen, type VIII, alpha 2	protein-coding	0.155000	0.805970	
mm_52557.1	chr6	116137337	116137537	+	1	NA	NA	NA	55937	NM_177412	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.010000	0.398010	
mm_1584.1	chr1	74295541	74295741	+	1	NA	NA	NA	8695	NM_027154	69660	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.015000	0.567164	67(CGCCTTTAAGGG,-,0.00),68(GCCTTTAAGGGA,+,0.00),69(CCTTTAAGGGAA,+,0.00)
mm_46403.1	chr5	104092945	104093145	-	1	NA	NA	NA	-15437	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.020000	0.462687	
mm_127084.1	chr15	97718641	97718841	+	1	NA	NA	NA	2409	NM_008902	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.015000	0.552239	
mm_78629.1	chr9	38731119	38731319	+	1	NA	NA	NA	12951	NM_172767	67776	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0.000000	0.412935	
mm_21374.1	chr2	157337326	157337526	-	1	NA	NA	NA	0	NM_001329683	14601	Mm.389327	NM_010285	ENSMUSG00000027643	Ghrh	GRF|Ghrf	growth hormone releasing hormone	protein-coding	0.055000	0.562189	-34(AGGTATAAAAGG,-,0.00)
mm_161646.1	chr17	3532510	3532710	+	1	NA	NA	NA	56	NM_001101560	621628	Mm.469914	NM_001101560	ENSMUSG00000091530	Cldn20	EG621628	claudin 20	protein-coding	0.020000	0.537313	
mm_125973.1	chr15	76294705	76294905	+	1	NA	NA	NA	371	NM_001195537	100503915	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	ENSMUSG00000071724|Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	0.060000	0.641791	
mm_151171.1	chr19	53310334	53310534	+	1	NA	NA	NA	-72	NM_001008542	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.065000	0.621891	
mm_92542.1	chr10	79671380	79671580	-	1	NA	NA	NA	2070	NM_148934	110012	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	0.005000	0.502488	-41(GACCATAAAAGG,-,0.00),-39(CCATAAAAGGGG,+,0.00)
mm_127442.1	chr15	101270355	101270555	+	1	NA	NA	NA	3609	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.050000	0.621891	
mm_100263.1	chr11	117332332	117332532	+	1	NA	NA	NA	119	NM_001113488	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.050000	0.651741	
mm_172310.1	chr7	104950385	104950585	-	1	NA	NA	NA	10245	NM_207146	384703	Mm.377901	NM_207146	ENSMUSG00000044705	Olfr670	GA_x5J8B7W6B6J-141796-141659|MOR32-8	olfactory receptor 670	protein-coding	0.035000	0.482587	
mm_112241.1	chr12	113482378	113482578	-	1	NA	NA	NA	-7087	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.527363	
mm_130673.1	chr15	100674619	100674819	-	1	NA	NA	NA	-5219	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.020000	0.502488	
mm_120442.1	chr14	65902934	65903134	+	1	NA	NA	NA	50710	NM_172604	219151	Mm.344095	NM_172604	ENSMUSG00000034463	Scara3	APC7|C130058N24Rik|CSR|CSR1|MSLR1|MSRL1	scavenger receptor class A, member 3	protein-coding	0.015000	0.522388	
mm_15773.1	chr2	164332710	164332910	+	1	NA	NA	NA	45	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.015000	0.492537	
mm_70187.1	chr7	143780146	143780346	-	1	NA	NA	NA	4254	NM_175534	244238	Mm.183561	NM_175534	ENSMUSG00000048965	Mrgpre	C130069N09Rik|Ebrt3|Mgrf|MrgE	MAS-related GPR, member E	protein-coding	0.005000	0.522388	
mm_132362.1	chr16	34690661	34690861	+	1	NA	NA	NA	145	NM_172824	239839	Mm.272045	NM_172824	ENSMUSG00000022833	Ccdc14	G630039H03Rik	coiled-coil domain containing 14	protein-coding	0.080000	0.606965	
mm_166664.1	chr6	90325090	90325290	-	1	NA	NA	NA	-5	NM_027928	71797	Mm.49071	NM_027928	ENSMUSG00000056643	Chst13	1110067M19Rik|C4ST-3	carbohydrate (chondroitin 4) sulfotransferase 13	protein-coding	0.065000	0.651741	
mm_63462.1	chr7	127573307	127573507	+	1	NA	NA	NA	59	NM_026888	68961	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	0.020000	0.562189	
mm_58885.1	chr7	17087941	17088141	+	1	NA	NA	NA	14001	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.010000	0.547264	
mm_91340.1	chr10	26078908	26079108	-	1	NA	NA	NA	44	NM_029881	77220	Mm.266260	NM_029881	ENSMUSG00000049420	Tmem200a	C030003D03Rik	transmembrane protein 200A	protein-coding	0.060000	0.592040	
mm_91537.1	chr10	39227665	39227865	-	1	NA	NA	NA	-63971	NM_001127376	327743	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|ENSMUSG00000062074|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0.020000	0.467662	
mm_54216.1	chr6	25689843	25690043	-	1	NA	NA	NA	37	NM_010338	14763	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	0.065000	0.686567	
mm_118952.1	chr14	27379462	27379662	+	1	NA	NA	NA	18173	NM_001289688	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.035000	0.532338	
mm_32640.1	chr4	115056925	115057125	+	1	NA	NA	NA	599	NM_011527	21349	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.085000	0.661692	
mm_153526.1	chr19	41794913	41795113	-	1	NA	NA	NA	7071	NM_001163495	71085	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	0.020000	0.437811	
mm_169136.1	chr13	59477992	59478192	-	1	NA	NA	NA	66359	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.020000	0.597015	
mm_169106.1	chr13	44869544	44869744	-	1	NA	NA	NA	132452	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.070000	0.532338	45(CCCCAGAAAAGG,-,0.00)
mm_71389.1	chr8	46151761	46151961	+	1	NA	NA	NA	-17695	NM_025747	66756	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430|mKIAA1430	cilia and flagella associated protein 97	protein-coding	0.140000	0.751244	
mm_3816.1	chr1	159232147	159232347	+	1	NA	NA	NA	-79	NM_011931	26374	Mm.328135	NM_011931	ENSMUSG00000040782	Rfwd2	AI316802|C80879|Cop1	ring finger and WD repeat domain 2	protein-coding	0.140000	0.741294	
mm_68060.1	chr7	101845172	101845372	-	1	NA	NA	NA	59	NM_001303231	14276	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0.020000	0.497512	
mm_32365.1	chr4	105257003	105257203	+	1	NA	NA	NA	99756	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.000000	0.422886	
mm_170502.1	chr19	24290142	24290342	-	1	NA	NA	NA	-9656	NM_008044	14297	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	0.030000	0.492537	
mm_69680.1	chr7	139985809	139986009	-	1	NA	NA	NA	965	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.015000	0.522388	
mm_78771.1	chr9	43743601	43743801	+	1	NA	NA	NA	-875	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	0.075000	0.666667	
mm_18996.1	chr2	76868284	76868484	-	1	NA	NA	NA	114163	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.055000	0.482587	
mm_98818.1	chr11	97310166	97310366	+	1	NA	NA	NA	-5450	NM_025927	67036	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.040000	0.502488	
mm_142695.1	chr17	47834341	47834541	-	1	NA	NA	NA	250	NM_001109973	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.100000	0.736318	
mm_104371.1	chr11	94358773	94358973	-	1	NA	NA	NA	30872	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.055000	0.557214	
mm_137415.1	chr17	26123409	26123609	+	1	NA	NA	NA	6	NM_024227	68611	Mm.273102	NM_024227	ENSMUSG00000024181	Mrpl28	1110015G04Rik|L28mt|MAAT1|MRP-L28|p15	mitochondrial ribosomal protein L28	protein-coding	0.100000	0.616915	
mm_149422.1	chr19	11443503	11443703	+	1	NA	NA	NA	45	NM_021718	60361	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	0.000000	0.407960	
mm_30532.1	chr4	3369888	3370088	+	1	NA	NA	NA	-167102	NR_037306	100499523		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0.015000	0.412935	
mm_139700.1	chr17	57451268	57451468	+	1	NA	NA	NA	92682	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.472637	
mm_77151.1	chr8	111644211	111644411	-	1	NA	NA	NA	868	NM_011742	22640	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0.005000	0.353234	
mm_98569.1	chr11	95413701	95413901	+	1	NA	NA	NA	-282	NM_025287	20747	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0.070000	0.592040	
mm_87548.1	chr10	53635369	53635569	+	1	NA	NA	NA	-5030	NM_027830	71567	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0.025000	0.427861	
mm_76702.1	chr8	94434178	94434378	-	1	NA	NA	NA	825	NR_015514	320377	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0.080000	0.631841	
mm_136510.1	chr16	97170705	97170905	-	1	NA	NA	NA	-70	NM_031174	13508	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	Down syndrome cell adhesion molecule	protein-coding	0.090000	0.726368	-9(GCTTTAAGACTG,+,0.00)
mm_155659.1	chrX	86191635	86191835	+	1	NA	NA	NA	-40	NM_007430	11614	Mm.5180	NM_007430	ENSMUSG00000025056	Nr0b1	AHX|Ahc|Ahch|DAX-1|Dax1	nuclear receptor subfamily 0, group B, member 1	protein-coding	0.070000	0.616915	
mm_145629.1	chr18	61109708	61109908	+	1	NA	NA	NA	4236	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.025000	0.542289	
mm_134083.1	chr16	8738790	8738990	-	1	NA	NA	NA	-548	NM_001003918	252870	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.185000	0.771144	
mm_23005.1	chr3	34104362	34104562	+	1	NA	NA	NA	-23108	NM_026332	67713	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.030000	0.512438	
mm_48016.1	chr5	136170548	136170748	-	1	NA	NA	NA	8	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.125000	0.746269	
mm_39197.1	chr4	156015838	156016038	-	1	NA	NA	NA	2243	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.020000	0.582090	
mm_16965.1	chr2	17689785	17689985	-	1	NA	NA	NA	41183	NM_028757	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0.000000	0.442786	
mm_169637.1	chr15	47539964	47540164	+	1	NA	NA	NA	916759	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0.060000	0.522388	
mm_117004.1	chr13	57798631	57798831	-	1	NA	NA	NA	109601	NM_009262	20745	Mm.379020	NM_009262	ENSMUSG00000056222	Spock1	Spock|Ticn1|testican	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	protein-coding	0.000000	0.303483	
mm_78469.1	chr9	32636116	32636316	+	1	NA	NA	NA	-59826	NM_011808	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.030000	0.547264	
mm_61637.1	chr7	80291159	80291359	+	1	NA	NA	NA	-3192	NM_145150	233406	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	0.010000	0.472637	
mm_143947.1	chr17	86753373	86753573	-	1	NA	NA	NA	-391	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.085000	0.671642	
mm_138998.1	chr17	45555789	45555989	+	1	NA	NA	NA	189	NM_001304956	18037	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	0.095000	0.646766	
mm_43599.1	chr5	137787762	137787962	+	1	NA	NA	NA	60	NM_001005426	381678	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	0.090000	0.601990	
mm_10950.1	chr2	25617696	25617896	+	1	NA	NA	NA	-118	NM_029859	77058	Mm.478493	NM_029859	ENSMUSG00000026940	Ccdc183	4921530D09Rik|Cccd183|Kiaa1984	coiled-coil domain containing 183	protein-coding	0.005000	0.472637	
mm_92747.1	chr10	81001173	81001373	-	1	NA	NA	NA	92	NM_001038655	14708	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.040000	0.626866	
mm_166696.1	chr6	114004660	114004860	+	1	NA	NA	NA	37320	NM_009723	11941	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.010000	0.532338	
mm_122037.1	chr14	30008726	30008926	-	1	NA	NA	NA	70	NM_019583	50905	Mm.269363	NM_019583	ENSMUSG00000015966	Il17rb	Evi27|IL-17ER|IL-17Rh1|IL17RH1|Il17br	interleukin 17 receptor B	protein-coding	0.080000	0.701493	
mm_65373.1	chr7	25073047	25073247	-	1	NA	NA	NA	-778	NM_008168	14809	Mm.2879	NM_008168	ENSMUSG00000003378	Grik5	GluK5|GluRgamma2|KA2	glutamate receptor, ionotropic, kainate 5 (gamma 2)	protein-coding	0.025000	0.661692	
mm_90713.1	chr10	4387887	4388087	-	1	NA	NA	NA	121	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.130000	0.716418	
mm_55901.1	chr6	83627126	83627326	-	1	NA	NA	NA	28890	NM_016751	51811	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0.050000	0.621891	
mm_32047.1	chr4	97581592	97581792	+	1	NA	NA	NA	-251	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.000000	0.422886	-62(CTCCTTAAAAAA,-,0.00)
mm_22074.1	chr2	168749342	168749542	-	1	NA	NA	NA	-7306	NM_001289446	11981	Mm.330819	NM_015731	ENSMUSG00000027546	Atp9a	IIa	ATPase, class II, type 9A	protein-coding	0.010000	0.383085	
mm_117403.1	chr13	73763437	73763637	-	1	NA	NA	NA	-160	NM_011390	20499	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.065000	0.636816	-29(CCCTTAAAACTC,+,0.00)
mm_25640.1	chr3	121291671	121291871	+	1	NA	NA	NA	-46	NM_024178	66789	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0.055000	0.552239	
mm_138436.1	chr17	35110600	35110800	+	1	NA	NA	NA	2400	NM_148947	114652	Mm.222643	NM_148947	ENSMUSG00000034482	Ly6g5c	G5c|NG33	lymphocyte antigen 6 complex, locus G5C	protein-coding	0.025000	0.567164	
mm_129160.1	chr15	76243020	76243220	-	1	NA	NA	NA	320	NM_001163576	671535	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0.025000	0.562189	
mm_107804.1	chr12	64969205	64969405	+	1	NA	NA	NA	3563	NM_177805	328108	Mm.138465	NM_177805	ENSMUSG00000035614	Fam179b	A430041B07Rik|BC062107|C130034K06|mKIAA0423	family with sequence similarity 179, member B	protein-coding	0.005000	0.313433	
mm_125446.1	chr15	47520597	47520797	+	1	NA	NA	NA	897392	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0.010000	0.402985	-53(CTCCATTAAAGA,-,0.00)
mm_746.1	chr1	43537190	43537390	+	1	NA	NA	NA	91539	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.010000	0.487562	
mm_105082.1	chr11	100845804	100846004	-	1	NA	NA	NA	4681	NM_001113563	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.010000	0.512438	-31(GAGCCTTAAAGC,-,0.00)
mm_85818.1	chr9	110408113	110408313	-	1	NA	NA	NA	-3	NM_001081043	104831	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.100000	0.706468	
mm_75763.1	chr8	69974039	69974239	-	1	NA	NA	NA	244	NM_001113346	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.175000	0.825871	
mm_877.1	chr1	52155198	52155398	+	1	NA	NA	NA	35676	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.005000	0.323383	
mm_166719.1	chr6	120294606	120294806	-	1	NA	NA	NA	-147	NM_198884	330406	Mm.321840	NM_198884	ENSMUSG00000041372	B4galnt3	AB114826|B4GalNAcT3|C330047A21	beta-1,4-N-acetyl-galactosaminyl transferase 3	protein-coding	0.135000	0.746269	
mm_43246.1	chr5	130144974	130145174	+	1	NA	NA	NA	186	NM_172509	212919	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	0.100000	0.686567	
mm_150538.1	chr19	39307602	39307802	+	1	NA	NA	NA	20617	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.005000	0.398010	
mm_121477.1	chr14	121035392	121035592	+	1	NA	NA	NA	-82	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.090000	0.776119	
mm_150396.1	chr19	36409873	36410073	+	1	NA	NA	NA	30906	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.215000	0.865672	
mm_137093.1	chr17	21535459	21535659	+	1	NA	NA	NA	20	NM_144515	22710	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	0.020000	0.572139	
mm_83535.1	chr9	46233087	46233287	-	1	NA	NA	NA	2112	NM_001289833	11814	Mm.390161	NM_023114	ENSMUSG00000032081	Apoc3	apo-CIII|apoC-III	apolipoprotein C-III	protein-coding	0.010000	0.532338	42(GCTTTAAGGGGA,+,0.00)
mm_130574.1	chr15	99497803	99498003	-	1	NA	NA	NA	-23173	NM_029236	75284	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	0.020000	0.547264	
mm_122813.1	chr14	54603263	54603463	-	1	NA	NA	NA	2545	NM_028890	74359	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	-	RIKEN cDNA 4931414P19 gene	protein-coding	0.125000	0.721393	
mm_40656.1	chr5	65131099	65131299	+	1	NA	NA	NA	-32	NM_175174	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.030000	0.417910	76(TTCTTTTAAAGC,-,0.00),77(TCTTTTAAAGCT,+,0.00)
mm_153909.1	chr19	47138126	47138326	-	1	NA	NA	NA	68	NM_133746	72691	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	0.045000	0.552239	
mm_141650.1	chr17	33665444	33665644	-	1	NA	NA	NA	19914	NM_001109913	76936	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	0.010000	0.442786	
mm_118695.1	chr14	22140171	22140371	+	1	NA	NA	NA	120559	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.015000	0.512438	
mm_54286.1	chr6	29231909	29232109	-	1	NA	NA	NA	-15645	NM_001302934	23917	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine 5'-phosphate dehydrogenase 1	protein-coding	0.010000	0.611940	
mm_5190.1	chr1	13216997	13217197	-	1	NA	NA	NA	-89934	NM_001081209	383491	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0.000000	0.383085	
mm_62491.1	chr7	101933890	101934090	+	1	NA	NA	NA	-133	NM_001162973	69358	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0.070000	0.592040	
mm_677.1	chr1	40466095	40466295	+	1	NA	NA	NA	189	NM_008365	16182	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0.005000	0.537313	
mm_150488.1	chr19	39006972	39007172	+	1	NA	NA	NA	53	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.000000	0.542289	-85(CATTATAAAAGC,-,0.00)
mm_24396.1	chr3	90293203	90293403	+	1	NA	NA	NA	23154	NR_105979	102465612		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.125000	0.761194	
mm_35895.1	chr4	49549400	49549600	-	1	NA	NA	NA	46	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.015000	0.477612	-31(GGCTATAAAAAC,-,0.00)
mm_60707.1	chr7	45220397	45220597	+	1	NA	NA	NA	4744	NM_001285498	21677	Mm.3019	NM_011565	ENSMUSG00000030796	Tead2	ETF|Etdf|TEAD-2|TEF-4|TEF4	TEA domain family member 2	protein-coding	0.015000	0.582090	
mm_137681.1	chr17	28823487	28823687	+	1	NA	NA	NA	22461	NM_001081315	268936	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0.010000	0.517413	
mm_109270.1	chr12	109545490	109545690	+	1	NA	NA	NA	192	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.005000	0.422886	
mm_109219.1	chr12	108792246	108792446	+	1	NA	NA	NA	-965	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.150000	0.636816	
mm_107326.1	chr12	31654770	31654970	+	1	NA	NA	NA	1	NM_001163126	238123	Mm.173068	NM_001163126	ENSMUSG00000035933	Cog5	5430405C01Rik|C87247|D18362|GOLTC1|GTC90	component of oligomeric golgi complex 5	protein-coding	0.090000	0.626866	
mm_121334.1	chr14	115042181	115042381	+	1	NA	NA	NA	-1390	NR_029785	723905		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0.115000	0.711443	
mm_162573.1	chr1	175104956	175105156	+	1	NA	NA	NA	-183237	NM_011825	23893	Mm.25760	NM_011825	ENSMUSG00000050069	Grem2	Gremlin2|Prdc	gremlin 2, DAN family BMP antagonist	protein-coding	0.005000	0.407960	-68(GTGTCTAAATGG,-,0.00)
mm_61886.1	chr7	89632914	89633114	+	1	NA	NA	NA	196	NM_181407	109264	Mm.334011	NM_181407	ENSMUSG00000030621	Me3	1700020C08Rik|B230207H15Rik	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding	0.105000	0.681592	
mm_22789.1	chr3	22087318	22087518	+	1	NA	NA	NA	10766	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.005000	0.417910	
mm_105487.1	chr11	105974985	105975185	-	1	NA	NA	NA	-123	NM_009598	11421	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0.005000	0.587065	
mm_50846.1	chr6	54848813	54849013	+	1	NA	NA	NA	31997	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.000000	0.432836	
mm_26466.1	chr3	144188622	144188822	+	1	NA	NA	NA	13610	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.010000	0.333333	
mm_113718.1	chr13	43615936	43616136	+	1	NA	NA	NA	239	NM_183204	328234	Mm.40588	NM_183204	ENSMUSG00000044164	Rnf182	C630023L15Rik	ring finger protein 182	protein-coding	0.145000	0.776119	
mm_98577.1	chr11	95712870	95713070	+	1	NA	NA	NA	-216	NR_045780	432396	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	0.205000	0.825871	
mm_44736.1	chr5	31173924	31174124	-	1	NA	NA	NA	6120	NM_027901	71752	Mm.271923	NM_027901	ENSMUSG00000101678	Gtf3c2	1300004C11Rik|2610510G03Rik|AI225816|AU041069|TFIIIC110|mKIAA0011	general transcription factor IIIC, polypeptide 2, beta	protein-coding	0.015000	0.512438	15(GGCGCTAAAAGG,-,0.00)
mm_168092.1	chr10	128083182	128083382	+	1	NA	NA	NA	-25	NM_016774	11947	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	-	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	0.085000	0.621891	
mm_164847.1	chr18	44315552	44315752	+	1	NA	NA	NA	-18422	NM_001033621	58916	Mm.143804	NM_001033621	ENSMUSG00000024471	Myot	5530402I04Rik|Ttid	myotilin	protein-coding	0.005000	0.457711	
mm_19449.1	chr2	91986185	91986385	-	1	NA	NA	NA	-22722	NM_138306	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.020000	0.547264	
mm_20194.1	chr2	122704011	122704211	-	1	NA	NA	NA	-1448	NM_001290993	22785	Mm.27801	NM_011774	ENSMUSG00000005802	Slc30a4	Znt4|lm|znT-4	solute carrier family 30 (zinc transporter), member 4	protein-coding	0.010000	0.437811	-85(CCTTTTATGACC,+,0.00)
mm_69228.1	chr7	127649271	127649471	-	1	NA	NA	NA	-34938	NM_177226	320683	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0.010000	0.537313	
mm_172671.1	chr8	44935147	44935347	+	1	NA	NA	NA	-14961	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.065000	0.641791	
mm_44976.1	chr5	36826024	36826224	-	1	NA	NA	NA	4525	NM_008550	17160	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0.040000	0.537313	
mm_108015.1	chr12	73594432	73594632	+	1	NA	NA	NA	9736	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.025000	0.522388	
mm_31787.1	chr4	63667519	63667719	+	1	NA	NA	NA	-45190	NM_029324	75524	Mm.38543	NM_029324	ENSMUSG00000058935	1700018C11Rik	bM230C2.3	RIKEN cDNA 1700018C11 gene	protein-coding	0.005000	0.477612	
mm_39153.1	chr4	155414672	155414872	-	1	NA	NA	NA	5582	NM_001166029	544678	Mm.472798	NM_177674	ENSMUSG00000078490	Cfap74	2010015L04Rik|A530045M11	cilia and flagella associated protein 74	protein-coding	0.015000	0.452736	
mm_125475.1	chr15	54434914	54435114	+	1	NA	NA	NA	24240	NM_173422	239447	Mm.82400	NM_173422	ENSMUSG00000038591	Colec10	CL-L1	collectin sub-family member 10	protein-coding	0.010000	0.492537	-32(TGTTTTAAAAGG,-,0.00),-31(GTTTTAAAAGGG,+,0.00)
mm_97536.1	chr11	78550841	78551041	+	1	NA	NA	NA	-206	NM_133706	69071	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0.080000	0.611940	
mm_101521.1	chr11	32614605	32614805	-	1	NA	NA	NA	-27850	NM_001271348	103583	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.110000	0.651741	
mm_37011.1	chr4	112774724	112774924	-	1	NA	NA	NA	37	NM_177668	230613	Mm.122553	NM_177668	ENSMUSG00000048766	Skint10	A030001H23Rik|Gm570	selection and upkeep of intraepithelial T cells 10	protein-coding	0.000000	0.368159	
mm_161106.1	chr12	102899275	102899475	+	1	NA	NA	NA	69	NM_001039049	75483	Mm.660	NM_001039049	ENSMUSG00000043319	Cox8c	1700007F21Rik|COX8-3|COXVIII-3	cytochrome c oxidase subunit VIIIc	protein-coding	0.060000	0.587065	
mm_155326.1	chrX	64496907	64497107	+	1	NA	NA	NA	-220011	NM_178740	245446	Mm.101707	NM_178740	ENSMUSG00000046699	Slitrk4	6430513G13|D930039I09Rik	SLIT and NTRK-like family, member 4	protein-coding	0.000000	0.243781	
mm_135124.1	chr16	35843680	35843880	-	1	NA	NA	NA	27602	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.000000	0.388060	
mm_50098.1	chr6	41532992	41533192	+	1	NA	NA	NA	11316	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.512438	
mm_11817.1	chr2	44160136	44160336	+	1	NA	NA	NA	-94912	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.005000	0.323383	
mm_160629.1	chr9	106429434	106429634	+	1	NA	NA	NA	123	NM_009082	19944	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	0.100000	0.621891	
mm_106963.1	chr12	8928057	8928257	+	1	NA	NA	NA	6850	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.000000	0.527363	
mm_6648.1	chr1	79671986	79672186	-	1	NA	NA	NA	-114	NM_183027	252903	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0.035000	0.621891	
mm_3449.1	chr1	150102909	150103109	+	1	NA	NA	NA	2978	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.323383	
mm_149858.1	chr19	25097141	25097341	+	1	NA	NA	NA	97712	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.010000	0.522388	
mm_22046.1	chr2	168230490	168230690	-	1	NA	NA	NA	-32	NM_001160330	69372	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	0.075000	0.567164	
mm_165065.1	chr19	44293922	44294122	+	1	NA	NA	NA	346	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.035000	0.572139	
mm_92107.1	chr10	63023766	63023966	-	1	NA	NA	NA	-17	NM_001079824	432467	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	0.110000	0.751244	
mm_73425.1	chr8	106135316	106135516	+	1	NA	NA	NA	16	NR_040346	69771	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.030000	0.611940	
mm_108098.1	chr12	74804121	74804321	+	1	NA	NA	NA	373111	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0.015000	0.388060	
mm_106448.1	chr11	119937356	119937556	-	1	NA	NA	NA	-5636	NM_001037754	108100	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0.020000	0.582090	
mm_33875.1	chr4	136147135	136147335	+	1	NA	NA	NA	3413	NM_008321	15903	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.015000	0.432836	
mm_144121.1	chr18	4634884	4635084	+	1	NA	NA	NA	55	NM_001081963	240185	Mm.33179	NM_001081963	ENSMUSG00000033960	9430020K01Rik	1110056P05Rik|Gm328|Jcad|mKIAA1462	RIKEN cDNA 9430020K01 gene	protein-coding	0.125000	0.736318	
mm_45096.1	chr5	44226719	44226919	-	1	NA	NA	NA	-213	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.200000	0.825871	
mm_26614.1	chr3	152349908	152350108	+	1	NA	NA	NA	3530	NM_001076676	170822	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	0.005000	0.398010	
mm_88387.1	chr10	76468830	76469030	+	1	NA	NA	NA	-41	NM_019434	54387	Mm.30098	NM_019434	ENSMUSG00000001150	Mcm3ap	GANP|mKIAA0572	minichromosome maintenance complex component 3 associated protein	protein-coding	0.085000	0.641791	
mm_160560.1	chr9	52168252	52168452	-	1	NA	NA	NA	-241	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.135000	0.766169	
mm_126485.1	chr15	81607986	81608186	+	1	NA	NA	NA	21872	NM_177821	328572	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.010000	0.288557	
mm_162910.1	chr10	118107209	118107409	+	1	NA	NA	NA	-34478	NM_001162904	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.020000	0.557214	
mm_146112.1	chr18	74268120	74268320	+	1	NA	NA	NA	-68	NM_013594	17190	Mm.22522	NM_013594	ENSMUSG00000024561	Mbd1	Cxxc3|PCM1	methyl-CpG binding domain protein 1	protein-coding	0.100000	0.651741	
mm_134094.1	chr16	9894936	9895136	-	1	NA	NA	NA	97497	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.010000	0.567164	
mm_86934.1	chr10	24223320	24223520	+	1	NA	NA	NA	-97	NM_021509	59012	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	0.045000	0.621891	
mm_73210.1	chr8	95714515	95714715	+	1	NA	NA	NA	-1298	NM_001035123	66083	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	0.015000	0.378109	
mm_83179.1	chr9	40962945	40963145	-	1	NA	NA	NA	1067	NM_001081121	70989	Mm.335087	NM_001081121	ENSMUSG00000032023	Jhy	4931429I11Rik|BB239335	juvenile hydrocephalus	protein-coding	0.005000	0.363184	31(GCTTTTAAATAA,+,0.00)
mm_132990.1	chr16	52746371	52746571	+	1	NA	NA	NA	69273	NR_040495	73820	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0.010000	0.447761	
mm_83863.1	chr9	54802866	54803066	-	1	NA	NA	NA	38218	NM_013496	12903	Mm.34797	NM_013496	ENSMUSG00000032291	Crabp1	AI326249|CRABP-I|Crabp-1|CrabpI|Rbp-5	cellular retinoic acid binding protein I	protein-coding	0.005000	0.502488	
mm_86691.1	chr10	18431198	18431398	+	1	NA	NA	NA	23623	NM_173390	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.025000	0.606965	
mm_123650.1	chr14	69171732	69171932	-	1	NA	NA	NA	11	NR_045931	73554	Mm.320005	NR_045931	ENSMUSG00000092499	1700092C10Rik	-	RIKEN cDNA 1700092C10 gene	ncRNA	0.035000	0.577114	
mm_45861.1	chr5	87843347	87843547	-	1	NA	NA	NA	-6912	NR_003652	654494	Mm.475331	NM_001039193	ENSMUSG00000067156	Gm7337	EG654494	DAZ interacting protein 1 pseudogene	pseudo	0.010000	0.552239	
mm_76335.1	chr8	84713720	84713920	-	1	NA	NA	NA	12363	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.040000	0.611940	
mm_7612.1	chr1	126604602	126604802	-	1	NA	NA	NA	-111775	NM_172484	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.025000	0.552239	
mm_13851.1	chr2	119618629	119618829	+	1	NA	NA	NA	-224	NM_001042653	70645	Mm.246412	NM_001042653	ENSMUSG00000072980	Oip5	5730547N13Rik|Lint-25|Ms18b	Opa interacting protein 5	protein-coding	0.055000	0.512438	
mm_72551.1	chr8	84025973	84026173	+	1	NA	NA	NA	4599	NM_028877	74337	Mm.250943	NM_028877	ENSMUSG00000047986	Palm3	4432412L15Rik|AL024300	paralemmin 3	protein-coding	0.110000	0.776119	
mm_139944.1	chr17	71183610	71183810	+	1	NA	NA	NA	-268	NM_022882	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.145000	0.786070	
mm_93895.1	chr10	125389219	125389419	-	1	NA	NA	NA	-60784	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.085000	0.651741	
mm_91264.1	chr10	23785719	23785919	-	1	NA	NA	NA	2	NR_037681	100529075		NR_037681	ENSMUSG00000080486	Snord100	MBII-429|Z51	small nucleolar RNA, C/D box 100	snoRNA	0.015000	0.467662	
mm_33900.1	chr4	136284545	136284745	+	1	NA	NA	NA	-1424	NM_009557	22704	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	0.015000	0.507463	
mm_54061.1	chr6	13871365	13871565	-	1	NA	NA	NA	18	NR_024619	66520	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	ncRNA	0.045000	0.552239	
mm_95669.1	chr11	53856872	53857072	+	1	NA	NA	NA	2284	NR_033332	622459	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115|OTTMUSG00000005650	predicted gene 12216	ncRNA	0.015000	0.537313	-43(CCATATAAAAGG,-,0.00)
mm_33655.1	chr4	133096760	133096960	+	1	NA	NA	NA	-33773	NM_153423	242687	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.085000	0.512438	
mm_129001.1	chr15	74842523	74842723	-	1	NA	NA	NA	-980	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.005000	0.422886	
mm_77499.1	chr8	122611329	122611529	-	1	NA	NA	NA	58	NM_001193645	50917	Mm.1786	NM_016722	ENSMUSG00000015027	Galns	mFLJ00319	galactosamine (N-acetyl)-6-sulfate sulfatase	protein-coding	0.045000	0.641791	
mm_140225.1	chr17	83980498	83980698	+	1	NA	NA	NA	-17954	NR_130994	78148	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.010000	0.477612	
mm_133055.1	chr16	58408402	58408602	+	1	NA	NA	NA	-33	NM_028523	73379	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.130000	0.736318	
mm_98478.1	chr11	94950624	94950824	+	1	NA	NA	NA	14500	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.015000	0.537313	
mm_58143.1	chr6	141946862	141947062	-	1	NA	NA	NA	0	NM_013797	28248	Mm.103665	NM_013797	ENSMUSG00000041698	Slco1a1	A530084B21|OATP-1|Oatp1|Oatp1a1|Slc21a1	solute carrier organic anion transporter family, member 1a1	protein-coding	0.000000	0.457711	
mm_39046.1	chr4	152448728	152448928	-	1	NA	NA	NA	27	NM_001252655	16498	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	0.025000	0.616915	
mm_149026.1	chr19	8766621	8766821	+	1	NA	NA	NA	-4275	NM_025791	66836	Mm.440071	NM_025791	ENSMUSG00000010097	Tmem223	0610006I08Rik	transmembrane protein 223	protein-coding	0.040000	0.562189	
mm_94190.1	chr10	128960874	128961074	-	1	NA	NA	NA	14	NM_027853	71664	Mm.337232	NM_027853	ENSMUSG00000025347	Mettl7b	0610006F02Rik|AI266817	methyltransferase like 7B	protein-coding	0.015000	0.527363	-99(ACCCATTAAAAG,-,0.00),-97(CCATTAAAAGAA,+,0.00)
mm_142659.1	chr17	47687965	47688165	-	1	NA	NA	NA	321	NM_025365	66119	Mm.89912	NM_025365	ENSMUSG00000033475	Tomm6	1110002E23Rik|AI663970	translocase of outer mitochondrial membrane 6 homolog (yeast)	protein-coding	0.120000	0.646766	
mm_33995.1	chr4	137905150	137905350	+	1	NA	NA	NA	43013	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.025000	0.522388	
mm_153661.1	chr19	44395528	44395728	-	1	NA	NA	NA	12081	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.378109	
mm_154945.1	chrX	36328309	36328509	+	1	NA	NA	NA	0	NM_028894	74365	Mm.327654	NM_028894	ENSMUSG00000016239	Lonrf3	4932412G04Rik|5730439E01Rik|A830039N02Rik|AU023707|Rnf127	LON peptidase N-terminal domain and ring finger 3	protein-coding	0.120000	0.631841	
mm_138174.1	chr17	34264786	34264986	+	1	NA	NA	NA	1659	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.125000	0.646766	
mm_140159.1	chr17	80207432	80207632	+	1	NA	NA	NA	-227	NM_001195485	225027	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0.050000	0.572139	
mm_128372.1	chr15	42676186	42676386	-	1	NA	NA	NA	691	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.045000	0.502488	
mm_113697.1	chr13	43125786	43125986	+	1	NA	NA	NA	3047	NM_001005748	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.015000	0.482587	
mm_165266.1	chr2	74715905	74716105	-	1	NA	NA	NA	125	NR_027899	73429	Mm.443313	NR_027899		Hoxd3os1	1700064D17Rik|1700109F18Rik	homeobox D3, opposite strand 1	ncRNA	0.065000	0.636816	
mm_111594.1	chr12	101975929	101976129	-	1	NA	NA	NA	55	NM_016856	51786	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.100000	0.711443	
mm_144232.1	chr18	10346051	10346251	+	1	NA	NA	NA	20972	NM_001083628	381157	Mm.261535	NM_001083628	ENSMUSG00000042942	Greb1l	mKIAA4095	growth regulation by estrogen in breast cancer-like	protein-coding	0.000000	0.378109	
mm_25909.1	chr3	131112694	131112894	+	1	NA	NA	NA	3	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.020000	0.522388	-33(GGGTTTAAAGAG,-,0.00),-20(GCTTTTAAGAAC,+,0.00)
mm_159524.1	chr4	61673428	61673628	-	1	NA	NA	NA	562	NM_001134644	100048885	Mm.422695	NM_001134644		Gm2083	-	major urinary protein LOC100048885	protein-coding	0.000000	0.373134	
mm_67421.1	chr7	80339900	80340100	-	1	NA	NA	NA	219	NM_133952	101869	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	0.075000	0.626866	
mm_37385.1	chr4	120985196	120985396	-	1	NA	NA	NA	-11974	NR_105982	102465614		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.030000	0.502488	
mm_55044.1	chr6	48988407	48988607	-	1	NA	NA	NA	1646	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.015000	0.522388	
mm_106772.1	chr12	4600143	4600343	+	1	NA	NA	NA	7235	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.010000	0.472637	43(GCCTTTTAAAAA,-,0.00),44(CCTTTTAAAAAA,+,0.00)
mm_158794.1	chrX	167241024	167241224	-	1	NA	NA	NA	23205	NM_001313761	170744	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	0.010000	0.338308	
mm_934.1	chr1	55456629	55456829	+	1	NA	NA	NA	50783	NM_001114663	227120	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.010000	0.492537	31(CTTTTTAAAAAC,+,0.00)
mm_40048.1	chr5	33983443	33983643	+	1	NA	NA	NA	110	NM_001310546	381633	Mm.4923	NM_001033458	ENSMUSG00000070858	Gm1673	-	predicted gene 1673	protein-coding	0.135000	0.706468	
mm_7489.1	chr1	121327936	121328136	-	1	NA	NA	NA	-12	NM_133748	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.075000	0.651741	
mm_121910.1	chr14	21988325	21988525	-	1	NA	NA	NA	1176	NM_145459	218820	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.095000	0.641791	
mm_135592.1	chr16	50722697	50722897	-	1	NA	NA	NA	-4335	NR_105782	102466634		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA	0.000000	0.328358	
mm_105195.1	chr11	102088355	102088555	-	1	NA	NA	NA	60	NM_016695	50997	Mm.36242	NM_016695	ENSMUSG00000017314	Mpp2	D11Bwg0652e|Dlg2|Dlgh2|Pals4	membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	protein-coding	0.075000	0.611940	-58(CGCTTTAAGAGC,-,0.00),-57(GCTTTAAGAGCG,+,0.00)
mm_16209.1	chr2	173065205	173065405	+	1	NA	NA	NA	43403	NM_019547	56190	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.005000	0.442786	
mm_96036.1	chr11	59556242	59556442	+	1	NA	NA	NA	13656	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.020000	0.407960	
mm_171818.1	chr5	138504694	138504894	+	1	NA	NA	NA	59900	NM_029693	76658	Mm.73235	NM_029693	ENSMUSG00000029526	1700123K08Rik	-	RIKEN cDNA 1700123K08 gene	protein-coding	0.060000	0.592040	
mm_151972.1	chr19	5825894	5826094	-	1	NA	NA	NA	19484	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.000000	0.412935	
mm_161035.1	chr12	21316157	21316357	+	1	NA	NA	NA	-135	NM_026347	67732	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	0.055000	0.616915	
mm_55103.1	chr6	50223036	50223236	-	1	NA	NA	NA	38633	NM_018769	54722	Mm.248361	NM_018769	ENSMUSG00000029821	Dfna5	2310037D07Rik|4932441K13Rik|Dfna5h|EG14210|Fin15	deafness, autosomal dominant 5 (human)	protein-coding	0.020000	0.502488	
mm_95047.1	chr11	32286899	32287099	+	1	NA	NA	NA	35	NM_001033981	544763	Mm.450958	NM_001033981	ENSMUSG00000073063	Hbq1b	F830116E18Rik|Hbqt1	hemoglobin, theta 1B	protein-coding	0.060000	0.592040	
mm_108033.1	chr12	73755927	73756127	+	1	NA	NA	NA	-145297	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.025000	0.547264	
mm_121578.1	chr14	122913105	122913305	+	1	NA	NA	NA	-40	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.145000	0.736318	
mm_96679.1	chr11	69423237	69423437	+	1	NA	NA	NA	-9662	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.015000	0.522388	
mm_32213.1	chr4	101550322	101550522	+	1	NA	NA	NA	-172	NM_001164583	72685	Mm.76494	NM_198412	ENSMUSG00000028528	Dnajc6	2810027M23Rik|mKIAA0473	DnaJ heat shock protein family (Hsp40) member C6	protein-coding	0.065000	0.681592	
mm_128118.1	chr15	28229784	28229984	-	1	NA	NA	NA	26118	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.005000	0.353234	
mm_165162.1	chr2	25289856	25290056	+	1	NA	NA	NA	45	NM_146117	227618	Mm.275228	NM_146117	ENSMUSG00000026961	Lrrc26	-	leucine rich repeat containing 26	protein-coding	0.055000	0.587065	
mm_121365.1	chr14	117368111	117368311	+	1	NA	NA	NA	442914	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.000000	0.373134	
mm_108141.1	chr12	76255151	76255351	+	1	NA	NA	NA	19	NM_138745	108156	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0.070000	0.631841	
mm_83419.1	chr9	44925562	44925762	-	1	NA	NA	NA	-4920	NM_013795	27425	Mm.14663	NM_013795	ENSMUSG00000038717	Atp5l	4933437C06Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G	protein-coding	0.000000	0.288557	
mm_114451.1	chr13	66933304	66933504	+	1	NA	NA	NA	-332	NM_025547	66410	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	0.115000	0.761194	
mm_35350.1	chr4	32255359	32255559	-	1	NA	NA	NA	-161976	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.020000	0.467662	-35(GAGTATTTAAAG,-,0.00)
mm_41313.1	chr5	90469476	90469676	+	1	NA	NA	NA	8706	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.462687	
mm_15751.1	chr2	164237670	164237870	+	1	NA	NA	NA	571	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.040000	0.502488	
mm_107107.1	chr12	17791258	17791458	+	1	NA	NA	NA	100544	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.020000	0.592040	
mm_37036.1	chr4	115487160	115487360	-	1	NA	NA	NA	8881	NM_007822	13119	Mm.250901	NM_007822	ENSMUSG00000028715	Cyp4a14	AI314743	cytochrome P450, family 4, subfamily a, polypeptide 14	protein-coding	0.010000	0.517413	
mm_131607.1	chr16	19232506	19232706	+	1	NA	NA	NA	54135	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.000000	0.472637	
mm_62358.1	chr7	100499245	100499445	+	1	NA	NA	NA	5987	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.015000	0.542289	
mm_359.1	chr1	33813290	33813490	+	1	NA	NA	NA	1205	NM_133817	98403	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	0.010000	0.457711	
mm_81820.1	chr9	118043801	118044001	+	1	NA	NA	NA	3379	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.010000	0.442786	35(GTATTTAAAAAG,-,0.00)
mm_31619.1	chr4	59189147	59189347	+	1	NA	NA	NA	-303	NM_011673	22234	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.180000	0.805970	
mm_153783.1	chr19	45783946	45784146	-	1	NA	NA	NA	-755	NM_023799	76055	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	2810009A20Rik|4833427O07Rik|5830447M11Rik|AA408215|Hy5|Ncoat|OGA|mKIAA0679	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0.025000	0.457711	
mm_6604.1	chr1	75362103	75362303	-	1	NA	NA	NA	1911	NM_010043	13346	Mm.6712	NM_010043	ENSMUSG00000026208	Des	-	desmin	protein-coding	0.020000	0.537313	
mm_74124.1	chr8	123186069	123186269	+	1	NA	NA	NA	-66	NM_007876	13479	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	0.045000	0.567164	
mm_3430.1	chr1	150100911	150101111	+	1	NA	NA	NA	980	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.015000	0.398010	
mm_22362.1	chr2	181039157	181039357	-	1	NA	NA	NA	-80	NM_015730	11438	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	0.135000	0.796020	
mm_149269.1	chr19	10582137	10582337	+	1	NA	NA	NA	-4851	NR_126092	72982	Mm.391194	NM_028411	ENSMUSG00000024666	Tmem138	1700113I01Rik|2900055D14Rik	transmembrane protein 138	protein-coding	0.015000	0.507463	
mm_96304.1	chr11	63158324	63158524	+	1	NA	NA	NA	25621	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.060000	0.582090	
mm_108074.1	chr12	73945567	73945767	+	1	NA	NA	NA	-18863	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.010000	0.422886	
mm_18552.1	chr2	65171575	65171775	-	1	NA	NA	NA	66951	NM_177025	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.005000	0.437811	
mm_89131.1	chr10	85102696	85102896	+	1	NA	NA	NA	169	NM_001013028	103266	Mm.335025	NM_001013028	ENSMUSG00000060935	Tmem263	AI597468	transmembrane protein 263	protein-coding	0.165000	0.741294	
mm_68227.1	chr7	104439200	104439400	-	1	NA	NA	NA	25893	NM_009099	20128	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.000000	0.398010	
mm_55136.1	chr6	51320792	51320992	-	1	NA	NA	NA	-50982	NR_029719	387166		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.000000	0.572139	
mm_117546.1	chr13	83729575	83729775	-	1	NA	NA	NA	1569	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.035000	0.442786	
mm_157095.1	chrX	9437185	9437385	-	1	NA	NA	NA	32039	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.417910	
mm_2338.1	chr1	92848549	92848749	+	1	NA	NA	NA	-1729	NR_029559	387167		NR_029559	ENSMUSG00000065470	Mir149	Mirn149|mir-149|mmu-mir-149	microRNA 149	ncRNA	0.075000	0.681592	
mm_74505.1	chr8	8484643	8484843	-	1	NA	NA	NA	176030	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.030000	0.502488	
mm_60728.1	chr7	45413581	45413781	+	1	NA	NA	NA	-14	NM_198190	78405	Mm.20344	NM_198190	ENSMUSG00000074121	Ntf5	2900040K06Rik|AI462899|NT-4|NT-5|NT4|NT4/5|Ntf-5|Ntf4	neurotrophin 5	protein-coding	0.135000	0.781095	
mm_161073.1	chr12	80475777	80475977	+	1	NA	NA	NA	12782	NM_133798	97827	Mm.206631	NM_133798	ENSMUSG00000032705	Exd2	4930539P14Rik|C85658|Exdl2	exonuclease 3'-5' domain containing 2	protein-coding	0.015000	0.582090	
mm_162927.1	chr10	122270880	122271080	+	1	NA	NA	NA	151283	NR_027637	100043513	Mm.429141	NR_027637		Gm4489	Gm241	predicted gene 4489	ncRNA	0.005000	0.388060	
mm_59378.1	chr7	25897562	25897762	+	1	NA	NA	NA	4	NM_009999	13088	Mm.218749	NM_009999	ENSMUSG00000030483	Cyp2b10	Cyp2b|Cyp2b20|p16	cytochrome P450, family 2, subfamily b, polypeptide 10	protein-coding	0.015000	0.547264	-35(CAGCATAAAAGA,-,0.00)
mm_27855.1	chr3	79157161	79157361	-	1	NA	NA	NA	-11386	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.378109	
mm_5787.1	chr1	51857986	51858186	-	1	NA	NA	NA	57892	NM_001290982	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.010000	0.348259	-77(TCCTTTAAGAGC,-,0.00),-76(CCTTTAAGAGCT,+,0.00)
mm_97667.1	chr11	79660582	79660782	+	1	NA	NA	NA	14404	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	0.125000	0.696517	
mm_48160.1	chr5	137152660	137152860	-	1	NA	NA	NA	-36553	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.010000	0.497512	
mm_92817.1	chr10	81431455	81431655	-	1	NA	NA	NA	-4382	NM_026756	18029	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.045000	0.611940	
mm_81220.1	chr9	107590861	107591061	+	1	NA	NA	NA	3243	NM_025903	15983	Mm.215335	NM_025903	ENSMUSG00000010048	Ifrd2	1810034A24Rik|AA470234|AI838527|SKMc15	interferon-related developmental regulator 2	protein-coding	0.020000	0.601990	
mm_73492.1	chr8	107057101	107057301	+	1	NA	NA	NA	324	NR_028367	66164	Mm.334789	NM_025391	ENSMUSG00000031917	Nip7	1110017C15Rik|6330509M23Rik|AA408773|AA410017|PEachy	NIP7, nucleolar pre-rRNA processing protein	protein-coding	0.075000	0.621891	
mm_31701.1	chr4	62559706	62559906	+	1	NA	NA	NA	-41	NM_019492	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.010000	0.507463	
mm_118531.1	chr14	15437487	15437687	+	1	NA	NA	NA	1400	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding	0.040000	0.562189	-47(CCTCTTAGAGCC,+,0.00)
mm_84480.1	chr9	66834620	66834820	-	1	NA	NA	NA	-14	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.090000	0.671642	
mm_41840.1	chr5	104384680	104384880	+	1	NA	NA	NA	-50331	NM_001204201	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.015000	0.497512	
mm_16960.1	chr2	17460489	17460689	-	1	NA	NA	NA	-102925	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	0.010000	0.462687	
mm_162542.1	chr1	170016145	170016345	+	1	NA	NA	NA	46836	NR_040438	67303	Mm.396611	NR_040438	ENSMUSG00000097503	3110045C21Rik	AI838577	RIKEN cDNA 3110045C21 gene	ncRNA	0.030000	0.457711	-32(CCCTATAAAAAC,-,0.00),48(CACCATTAAAGC,-,0.00)
mm_161606.1	chr16	43978738	43978938	-	1	NA	NA	NA	212	NM_001007460	332175	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	0.010000	0.417910	
mm_61454.1	chr7	75586270	75586470	+	1	NA	NA	NA	130836	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.030000	0.587065	
mm_12512.1	chr2	72054491	72054691	+	1	NA	NA	NA	-26	NM_001204166	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.015000	0.482587	12(TCTTTTAGACCA,+,0.00)
mm_3896.1	chr1	161494553	161494753	+	1	NA	NA	NA	-4	NM_183391	240873	Mm.276823	NM_183391	ENSMUSG00000066755	Tnfsf18	Gitrl|Tnlg2a	tumor necrosis factor (ligand) superfamily, member 18	protein-coding	0.025000	0.467662	
mm_153440.1	chr19	40994095	40994295	-	1	NA	NA	NA	340	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.025000	0.572139	
mm_150170.1	chr19	32491207	32491407	+	1	NA	NA	NA	5538	NM_010799	17330	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0.005000	0.358209	
mm_164967.1	chr19	6531512	6531712	+	1	NA	NA	NA	11458	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.080000	0.676617	
mm_88273.1	chr10	75015220	75015420	+	1	NA	NA	NA	17233	NM_001163535	71236	Mm.414817	NM_027730	ENSMUSG00000009070	Rsph14	4933431K05Rik|Rtdr1	radial spoke head homolog 14 (Chlamydomonas)	protein-coding	0.025000	0.572139	
mm_17873.1	chr2	34957983	34958183	-	1	NA	NA	NA	3689	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.015000	0.582090	
mm_74160.1	chr8	123397804	123398004	+	1	NA	NA	NA	-9178	NM_008559	17199	Mm.324942	NM_008559	ENSMUSG00000074037	Mc1r	Mcr1|Mshra|Tob|e	melanocortin 1 receptor	protein-coding	0.020000	0.562189	
mm_158002.1	chrX	95026586	95026786	-	1	NA	NA	NA	-4	NM_178753	270624	Mm.115205	NM_178753	ENSMUSG00000071722	Spin4	9630042H07Rik	spindlin family, member 4	protein-coding	0.070000	0.601990	
mm_171664.1	chr4	4556536	4556736	-	1	NA	NA	NA	-27178	NM_001277919	622019	Mm.246123	NM_001277919		Gm11780	OTTMUSG00000004194	predicted gene 11780	protein-coding	0.030000	0.507463	
mm_100324.1	chr11	118145956	118146156	+	1	NA	NA	NA	-16837	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.030000	0.557214	
mm_173360.1	chrY	90819415	90819615	+	1	NA	NA	NA	19891	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.492537	
mm_113203.1	chr13	25055188	25055388	+	1	NA	NA	NA	-716	NM_001195617	195208	Mm.284719	NM_177577	ENSMUSG00000035910	Dcdc2a	AW492955|Dcdc2|RU2	doublecortin domain containing 2a	protein-coding	0.090000	0.661692	
mm_136064.1	chr16	84725067	84725267	-	1	NA	NA	NA	10135	NM_017404	27393	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	0.025000	0.492537	
mm_129508.1	chr15	79025820	79026020	-	1	NA	NA	NA	-2292	NM_008197	14958	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	0.025000	0.592040	
mm_103407.1	chr11	75449791	75449991	-	1	NA	NA	NA	4826	NM_138950	192652	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0.025000	0.601990	
mm_479.1	chr1	36702309	36702509	+	1	NA	NA	NA	7516	NM_146107	226977	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	0.025000	0.562189	
mm_25929.1	chr3	131222692	131222892	+	1	NA	NA	NA	49309	NM_008212	15107	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.000000	0.417910	68(ACATATAAAAGC,-,0.00)
mm_94108.1	chr10	128589562	128589762	-	1	NA	NA	NA	-161	NM_010153	13867	Mm.373043	NM_010153	ENSMUSG00000018166	Erbb3	C76256|Erbb-3|Erbb3r|Her3	erb-b2 receptor tyrosine kinase 3	protein-coding	0.075000	0.686567	
mm_8555.1	chr1	155232523	155232723	-	1	NA	NA	NA	73920	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.020000	0.542289	-42(TACCATTAAAGC,-,0.00)
mm_78386.1	chr9	28403388	28403588	+	1	NA	NA	NA	612219	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.160000	0.805970	
mm_41961.1	chr5	106351440	106351640	+	1	NA	NA	NA	30200	NR_136913	102635633	Mm.383511	NR_136913	ENSMUSG00000105508	Gm32921	-	predicted gene, 32921	ncRNA	0.035000	0.552239	43(CTCTCTAAGAGG,-,0.00)
mm_27976.1	chr3	80802658	80802858	-	1	NA	NA	NA	33	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.090000	0.621891	
mm_159924.1	chr6	56362711	56362911	-	1	NA	NA	NA	-1	NM_001159960	18575	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0.025000	0.497512	
mm_97045.1	chr11	72435168	72435368	+	1	NA	NA	NA	-258	NM_027819	71522	Mm.23336	NM_027819	ENSMUSG00000040471	Ggt6	9030405D14Rik|AI427679|AW490214	gamma-glutamyltransferase 6	protein-coding	0.005000	0.477612	
mm_20320.1	chr2	127319072	127319272	-	1	NA	NA	NA	-16987	NM_010090	13537	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.010000	0.467662	
mm_30627.1	chr4	8735927	8736127	+	1	NA	NA	NA	45621	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.010000	0.442786	
mm_35133.1	chr4	11322028	11322228	-	1	NA	NA	NA	3	NM_001081201	381510	Mm.331486	NM_001081201	ENSMUSG00000045205	Dpy19l4	Gm1023|Narg3	dpy-19-like 4 (C. elegans)	protein-coding	0.100000	0.736318	
mm_28088.1	chr3	85778024	85778224	-	1	NA	NA	NA	-31915	NM_172682	229488	Mm.119926	NM_172682	ENSMUSG00000051000	Fam160a1	9930021J17Rik	family with sequence similarity 160, member A1	protein-coding	0.005000	0.402985	
mm_128700.1	chr15	63479449	63479649	-	1	NA	NA	NA	59	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA	0.000000	0.422886	
mm_168298.1	chr11	106033278	106033478	-	1	NA	NA	NA	-3494	NM_027946	71833	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.035000	0.502488	9(CTCTTTAAAGAG,+,0.00),9(CTCTTTAAAGAG,-,0.00),11(CTTTAAAGAGGG,+,0.00)
mm_21827.1	chr2	165386942	165387142	-	1	NA	NA	NA	1217	NM_178411	228876	Mm.26316	NM_178411	ENSMUSG00000017667	Zfp334	D2Ertd535e	zinc finger protein 334	protein-coding	0.035000	0.557214	
mm_20032.1	chr2	119666052	119666252	-	1	NA	NA	NA	-3354	NM_027175	69702	Mm.5390	NM_027175	ENSMUSG00000027305	Ndufaf1	2410001M24Rik|CGI-65|CIA30	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1	protein-coding	0.060000	0.522388	
mm_83587.1	chr9	48388279	48388479	-	1	NA	NA	NA	26338	NM_172921	244853	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	0.005000	0.393035	
mm_124113.1	chr14	79480908	79481108	-	1	NA	NA	NA	-186	NM_007920	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.155000	0.741294	
mm_114853.1	chr13	93299538	93299738	+	1	NA	NA	NA	-4119	NM_147176	26556	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0.010000	0.442786	
mm_75497.1	chr8	52196782	52196982	-	1	NA	NA	NA	-1314820	NM_001205054	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.015000	0.393035	
mm_142028.1	chr17	35234915	35235115	-	1	NA	NA	NA	5	NM_001347351	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.080000	0.716418	
mm_19543.1	chr2	98662702	98662902	-	1	NA	NA	NA	1195145	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.020000	0.333333	
mm_151212.1	chr19	53622952	53623152	+	1	NA	NA	NA	22656	NM_007790	13006	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.030000	0.457711	
mm_48761.1	chr5	148371429	148371629	-	1	NA	NA	NA	21286	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.025000	0.522388	
mm_106081.1	chr11	116174761	116174961	-	1	NA	NA	NA	-6683	NM_172571	217335	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.040000	0.641791	
mm_59611.1	chr7	28142397	28142597	+	1	NA	NA	NA	13031	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.452736	
mm_156096.1	chrX	112495174	112495374	+	1	NA	NA	NA	0	NM_026333	67715	Mm.45323	NM_026333	ENSMUSG00000025528	2010106E10Rik	-	RIKEN cDNA 2010106E10 gene	protein-coding	0.005000	0.402985	-33(TCCTATATAAGC,-,0.00)
mm_89427.1	chr10	90970159	90970359	+	1	NA	NA	NA	112484	NM_001042558	11783	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	0.015000	0.492537	
mm_16435.1	chr2	180394335	180394535	+	1	NA	NA	NA	-3944	NR_029901	723954		NR_029901	ENSMUSG00000065460	Mir133a-2	Mirn133a-2|mir-133a-2	microRNA 133a-2	ncRNA	0.005000	0.462687	
mm_59483.1	chr7	27462515	27462715	+	1	NA	NA	NA	10197	NM_001290525	233016	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0.040000	0.592040	
mm_109566.1	chr12	111971472	111971672	+	1	NA	NA	NA	13	NM_029056	74691	Mm.60648	NM_029056	ENSMUSG00000054003	Tdrd9	4930441E05Rik	tudor domain containing 9	protein-coding	0.050000	0.611940	
mm_73336.1	chr8	105304483	105304683	+	1	NA	NA	NA	-1018	NM_172760	234683	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	0.020000	0.537313	
mm_100393.1	chr11	119390377	119390577	+	1	NA	NA	NA	5	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.065000	0.646766	
mm_93170.1	chr10	93310876	93311076	-	1	NA	NA	NA	183	NM_001322268	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.050000	0.562189	
mm_44374.1	chr5	17814161	17814361	-	1	NA	NA	NA	21635	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.308458	
mm_120344.1	chr14	63748221	63748421	+	1	NA	NA	NA	21132	NR_030611	100124452		NR_030611	ENSMUSG00000076049	Mir598	Mirn598|mir-598|mmu-mir-598	microRNA 598	ncRNA	0.000000	0.462687	
mm_140622.1	chr17	12107957	12108157	-	1	NA	NA	NA	-11227	NM_026644	68262	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.010000	0.353234	44(CCTTTAATACAG,+,0.00)
mm_134211.1	chr16	11176156	11176356	-	1	NA	NA	NA	137	NR_027502	106205	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	0.145000	0.736318	
mm_113152.1	chr13	24801048	24801248	+	1	NA	NA	NA	-509	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.115000	0.646766	
mm_107976.1	chr12	72939840	72940040	+	1	NA	NA	NA	58	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	0.085000	0.701493	
mm_63515.1	chr7	127876112	127876312	+	1	NA	NA	NA	611	NM_146259	244219	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.080000	0.671642	
mm_113600.1	chr13	41235944	41236144	+	1	NA	NA	NA	-13800	NM_001135577	108934	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.025000	0.437811	
mm_57138.1	chr6	122609829	122610029	-	1	NA	NA	NA	158	NM_008108	14562	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0.035000	0.567164	
mm_25280.1	chr3	105491439	105491639	+	1	NA	NA	NA	32723	NM_019931	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	0.000000	0.447761	
mm_30555.1	chr4	3697257	3697457	+	1	NA	NA	NA	-17607	NR_028126	70720	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.000000	0.398010	
mm_142094.1	chr17	35834502	35834702	-	1	NA	NA	NA	3699	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.010000	0.432836	-74(GTATATATAGCC,+,0.00)
mm_72291.1	chr8	75213230	75213430	+	1	NA	NA	NA	-614	NM_029182	75141	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.100000	0.671642	
mm_99819.1	chr11	108637310	108637510	+	1	NA	NA	NA	-45199	NM_145688	76380	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0.010000	0.358209	
mm_11633.1	chr2	34775705	34775905	+	1	NA	NA	NA	3715	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.010000	0.388060	
mm_65491.1	chr7	25689005	25689205	-	1	NA	NA	NA	2103	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.050000	0.606965	
mm_101662.1	chr11	36677858	36678058	-	1	NA	NA	NA	266283	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.025000	0.557214	
mm_88399.1	chr10	76583779	76583979	+	1	NA	NA	NA	8231	NM_080845	14317	Mm.36278	NM_080845	ENSMUSG00000001155	Ftcd	-	formiminotransferase cyclodeaminase	protein-coding	0.045000	0.562189	
mm_125514.1	chr15	56695384	56695584	+	1	NA	NA	NA	-938	NM_008216	15117	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding	0.030000	0.383085	
mm_128421.1	chr15	45114832	45115032	-	1	NA	NA	NA	2	NM_026200	67498	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding	0.040000	0.577114	
mm_148871.1	chr19	6497634	6497834	+	1	NA	NA	NA	45336	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.060000	0.686567	
mm_152544.1	chr19	11336016	11336216	-	1	NA	NA	NA	30	NM_001025610	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.015000	0.507463	
mm_94964.1	chr11	30812386	30812586	+	1	NA	NA	NA	40711	NM_134013	103554	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	0.005000	0.393035	
mm_30850.1	chr4	24972415	24972615	+	1	NA	NA	NA	-904	NM_030733	81006	Mm.160412	NM_030733	ENSMUSG00000040372	Gpr63	PSP24beta|Psp24-2	G protein-coupled receptor 63	protein-coding	0.015000	0.492537	
mm_52232.1	chr6	103697663	103697863	+	1	NA	NA	NA	186887	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.010000	0.427861	
mm_167184.1	chr7	141997346	141997546	+	1	NA	NA	NA	5267	NR_037291	100526509		NR_037291	ENSMUSG00000092652	Mir3104	mir-3104|mmu-mir-3104	microRNA 3104	ncRNA	0.005000	0.507463	
mm_70178.1	chr7	143735765	143735965	-	1	NA	NA	NA	4495	NM_001199227	79196	Mm.21199	NM_024289	ENSMUSG00000037606	Osbpl5	1110006M06Rik|AI462538|ORP5|Obph1|Osbp2	oxysterol binding protein-like 5	protein-coding	0.000000	0.532338	
mm_66338.1	chr7	43399419	43399619	-	1	NA	NA	NA	-8761	NM_172900	243958	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0.000000	0.378109	
mm_115883.1	chr13	21787149	21787349	-	1	NA	NA	NA	-31	NM_178184	319170		NM_178184	ENSMUSG00000069309	Hist1h2an	-	histone cluster 1, H2an	protein-coding	0.065000	0.552239	-35(TCCTATAAAGGC,+,0.00),-35(TCCTATAAAGGC,-,0.00)
mm_13031.1	chr2	91054060	91054260	+	1	NA	NA	NA	144	NM_008948	19182	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	0.095000	0.621891	
mm_153960.1	chr19	47705529	47705729	-	1	NA	NA	NA	-13587	NM_001290825	12821	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	0.015000	0.507463	
mm_125349.1	chr15	39198156	39198356	+	1	NA	NA	NA	-30	NM_001256382	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.070000	0.701493	
mm_3416.1	chr1	144952799	144952999	+	1	NA	NA	NA	-177478	NM_022881	64214	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	0.035000	0.427861	
mm_70371.1	chr8	9977677	9977877	+	1	NA	NA	NA	60	NM_026868	68904	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	0.100000	0.686567	
mm_158038.1	chrX	98853291	98853491	-	1	NA	NA	NA	37634	NM_052976	94190	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	0.005000	0.278607	-100(GTTTTTAAAGTT,+,0.00),54(TCCTTTAAAAAA,-,0.00),55(CCTTTAAAAAAG,+,0.00)
mm_41776.1	chr5	103715113	103715313	+	1	NA	NA	NA	-38949	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.015000	0.422886	
mm_101657.1	chr11	36677637	36677837	-	1	NA	NA	NA	266504	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.020000	0.393035	17(GGACTTAAAAGG,-,0.00)
mm_19175.1	chr2	84359611	84359811	-	1	NA	NA	NA	65555	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.005000	0.308458	-77(GCACATAAAAAG,-,0.00),67(TTCTTTTAAAGC,-,0.00),68(TCTTTTAAAGCA,+,0.00)
mm_54126.1	chr6	18514656	18514856	-	1	NA	NA	NA	69	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding	0.145000	0.731343	
mm_48898.1	chr6	3201028	3201228	+	1	NA	NA	NA	-87391	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.080000	0.587065	
mm_15335.1	chr2	155956472	155956672	+	1	NA	NA	NA	14	NM_177217	16328	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	0.095000	0.721393	
mm_72814.1	chr8	87563795	87563995	+	1	NA	NA	NA	-12	NM_177901	330820	Mm.212913	NM_177901	ENSMUSG00000069971	4933402J07Rik	-	RIKEN cDNA 4933402J07 gene	protein-coding	0.005000	0.507463	
mm_61508.1	chr7	78719336	78719536	+	1	NA	NA	NA	-1216	NR_015542	414121	Mm.482537	NR_015542	ENSMUSG00000059146	E430016F16Rik	-	RIKEN cDNA E430016F16 gene	ncRNA	0.015000	0.467662	-23(AACTATAAAAAG,-,0.00)
mm_115460.1	chr13	119428367	119428567	+	1	NA	NA	NA	-133	NM_001079849	218693	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0.145000	0.791045	
mm_170319.1	chr18	39490991	39491191	-	1	NA	NA	NA	-3846	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.040000	0.616915	
mm_171604.1	chr4	148655051	148655251	-	1	NA	NA	NA	11834	NM_001085505	230909	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	0.010000	0.552239	
mm_14282.1	chr2	128801717	128801917	+	1	NA	NA	NA	-16486	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.000000	0.412935	58(TCTTTAAGAGCA,+,0.00)
mm_145492.1	chr18	60390027	60390227	+	1	NA	NA	NA	14098	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.010000	0.497512	
mm_18992.1	chr2	76867126	76867326	-	1	NA	NA	NA	115321	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.015000	0.402985	
mm_132707.1	chr16	43399114	43399314	+	1	NA	NA	NA	20982	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.000000	0.447761	
mm_114678.1	chr13	80886081	80886281	+	1	NA	NA	NA	2759	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.140000	0.711443	
mm_108207.1	chr12	76909406	76909606	+	1	NA	NA	NA	52742	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.015000	0.517413	
mm_154713.1	chrX	8892949	8893149	+	1	NA	NA	NA	696	NR_045448	102941	Mm.41588	NM_175327	ENSMUSG00000052364	B630019K06Rik	AI843180	novel protein similar to F-box and leucine-rich repeat protein 17 (Fbxl17)	pseudo	0.160000	0.786070	
mm_158271.1	chrX	110812719	110812919	-	1	NA	NA	NA	-1560	NM_008901	18994	Mm.56946	NM_008901	ENSMUSG00000056854	Pou3f4	Brn-4|Brn4|OTF-9|Otf9|Slf|oct-9	POU domain, class 3, transcription factor 4	protein-coding	0.000000	0.313433	
mm_141790.1	chr17	34315814	34316014	-	1	NA	NA	NA	-9761	NM_001033978	381091	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	0.005000	0.552239	
mm_125584.1	chr15	59599022	59599222	+	1	NA	NA	NA	-49532	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.025000	0.567164	
mm_122680.1	chr14	52010787	52010987	-	1	NA	NA	NA	3671	NM_001253695	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.025000	0.606965	
mm_168972.1	chr12	86470028	86470228	+	1	NA	NA	NA	48484	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.075000	0.611940	
mm_79146.1	chr9	47703478	47703678	+	1	NA	NA	NA	114630	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.025000	0.537313	
mm_154138.1	chr19	57360631	57360831	-	1	NA	NA	NA	168	NR_040316	320879	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	0.095000	0.631841	
mm_68503.1	chr7	111081517	111081717	-	1	NA	NA	NA	1413	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.020000	0.432836	
mm_73735.1	chr8	113643119	113643319	+	1	NA	NA	NA	6	NM_001048145	668110	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	0.045000	0.582090	
mm_6002.1	chr1	58973193	58973393	-	1	NA	NA	NA	189	NM_172406	70827	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	0.095000	0.646766	
mm_5993.1	chr1	58695854	58696054	-	1	NA	NA	NA	35	NM_175370	108812	Mm.442063	NM_175370	ENSMUSG00000047528	Als2cr12	4933405P16Rik|4933425F06Rik	amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 12 (human)	protein-coding	0.005000	0.487562	
mm_138737.1	chr17	36973510	36973710	+	1	NA	NA	NA	7627	NM_029747	76797	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding	0.020000	0.477612	
mm_76881.1	chr8	105617644	105617844	-	1	NA	NA	NA	2278	NR_035492	100316712		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0.035000	0.577114	-45(GTCTATAAATGT,-,0.00)
mm_83180.1	chr9	40963409	40963609	-	1	NA	NA	NA	603	NM_001081121	70989	Mm.335087	NM_001081121	ENSMUSG00000032023	Jhy	4931429I11Rik|BB239335	juvenile hydrocephalus	protein-coding	0.030000	0.358209	
mm_69876.1	chr7	141613620	141613820	-	1	NA	NA	NA	27	NR_040337	100036523	Mm.398994	NR_040337	ENSMUSG00000097170	Gm16982	-	predicted gene, 16982	ncRNA	0.025000	0.606965	
mm_121124.1	chr14	101840622	101840822	+	1	NA	NA	NA	99	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.045000	0.427861	-63(CTTTTTATGCTC,+,0.00)
mm_79466.1	chr9	56437327	56437527	+	1	NA	NA	NA	18581	NM_025812	66867	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0.065000	0.492537	
mm_31097.1	chr4	41755499	41755699	+	1	NA	NA	NA	371	NM_016658	14430	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	0.095000	0.661692	
mm_68362.1	chr7	106519083	106519283	-	1	NA	NA	NA	-78110	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.353234	
mm_122744.1	chr14	54149171	54149371	-	1	NA	NA	NA	104658	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.552239	
mm_162325.1	chr1	40079275	40079475	+	1	NA	NA	NA	-5393	NM_010555	16178	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.010000	0.447761	
mm_126014.1	chr15	76659776	76659976	+	1	NA	NA	NA	-140	NM_001276335	54151	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0.065000	0.621891	
mm_39859.1	chr5	30950041	30950241	+	1	NA	NA	NA	35	NM_021304	57742	Mm.389615	NM_021304	ENSMUSG00000006638	Abhd1	LABH-1|LABH1	abhydrolase domain containing 1	protein-coding	0.045000	0.567164	
mm_171440.1	chr4	141210265	141210465	-	1	NA	NA	NA	-3591	NM_001081174	76166	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723	REM2 and RAB-like small GTPase 1	protein-coding	0.090000	0.611940	-34(CTCCTTAAAGGG,-,0.00),-32(CCTTAAAGGGGA,+,0.00)
mm_15244.1	chr2	154657126	154657326	+	1	NA	NA	NA	200	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.100000	0.676617	
mm_163616.1	chr13	54731724	54731924	+	1	NA	NA	NA	18050	NM_001316710	26913	Mm.41812	NM_012014	ENSMUSG00000069227	Gprin1	GRIN1|Z16	G protein-regulated inducer of neurite outgrowth 1	protein-coding	0.005000	0.467662	
mm_25715.1	chr3	122728870	122729070	+	1	NA	NA	NA	-188	NM_153422	242202	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	0.075000	0.661692	
mm_129889.1	chr15	83510748	83510948	-	1	NA	NA	NA	59	NM_178869	319953	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0.095000	0.597015	
mm_142941.1	chr17	56036497	56036697	-	1	NA	NA	NA	40	NM_013664	20405	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0.145000	0.701493	
mm_108720.1	chr12	87163684	87163884	+	1	NA	NA	NA	-8299	NR_136901	625237	Mm.390529	NR_136901		Gm6566	EG625237	predicted gene 6566	ncRNA	0.015000	0.547264	
mm_13175.1	chr2	92945989	92946189	+	1	NA	NA	NA	30988	NM_030725	80976	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	0.025000	0.641791	
mm_134334.1	chr16	16490442	16490642	-	1	NA	NA	NA	36869	NM_001301818	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.010000	0.422886	
mm_137794.1	chr17	29662148	29662348	+	1	NA	NA	NA	1653	NM_028791	74157	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	0.020000	0.437811	
mm_23532.1	chr3	60626879	60627079	+	1	NA	NA	NA	125800	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.368159	
mm_11409.1	chr2	31572553	31572753	+	1	NA	NA	NA	2	NM_001290548	320267	Mm.207261	NM_001033389	ENSMUSG00000026843	Fubp3	A330051M14Rik|AV006371|FBP3|Marta2	far upstream element (FUSE) binding protein 3	protein-coding	0.060000	0.636816	
mm_20988.1	chr2	152109169	152109369	-	1	NA	NA	NA	3745	NM_029688	76650	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.010000	0.567164	
mm_129490.1	chr15	78773406	78773606	-	1	NA	NA	NA	-61	NM_008595	17305	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.035000	0.721393	
mm_3452.1	chr1	150103013	150103213	+	1	NA	NA	NA	3082	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.417910	
mm_137211.1	chr17	24162214	24162414	+	1	NA	NA	NA	1419	NM_172935	245847	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	0.030000	0.442786	-39(CGTTTTTAAAGC,-,0.00),-38(GTTTTTAAAGCA,+,0.00)
mm_79773.1	chr9	62838692	62838892	+	1	NA	NA	NA	5	NM_001033175	76524	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.115000	0.766169	
mm_165219.1	chr2	45060918	45061118	+	1	NA	NA	NA	-37841	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.532338	
mm_39285.1	chr5	3981284	3981484	+	1	NA	NA	NA	53198	NM_194462	100986	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	0.000000	0.283582	
mm_65257.1	chr7	19887827	19888027	-	1	NA	NA	NA	38	NM_177036	319930	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.025000	0.616915	
mm_58188.1	chr6	142989606	142989806	-	1	NA	NA	NA	-25254	NM_011374	20449	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0.025000	0.507463	
mm_93503.1	chr10	112928861	112929061	-	1	NA	NA	NA	65	NM_001033474	382423	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132|ENSMUSG00000074747	ataxin 7-like 3B	protein-coding	0.140000	0.726368	
mm_1626.1	chr1	74409291	74409491	+	1	NA	NA	NA	7	NM_009509	22349	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.010000	0.587065	-82(TCCCTTATATGG,-,0.00),-80(CCTTATATGGTG,+,0.00)
mm_6983.1	chr1	86356952	86357152	-	1	NA	NA	NA	-725	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.005000	0.462687	
mm_159275.1	chr2	164715219	164715419	+	1	NA	NA	NA	14	NM_001040055	641368	Mm.422380	NM_001040055	ENSMUSG00000074593	Spint5	Gm14316|OTTMUSG00000016293	serine protease inhibitor, Kunitz type 5	protein-coding	0.020000	0.517413	
mm_115449.1	chr13	118714283	118714483	+	1	NA	NA	NA	-316	NM_008002	14165	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	0.105000	0.701493	
mm_70605.1	chr8	13386548	13386748	+	1	NA	NA	NA	10130	NM_009724	11945	Mm.154039	NM_009724	ENSMUSG00000031449	Atp4b	AV080843	ATPase, H+/K+ exchanging, beta polypeptide	protein-coding	0.030000	0.537313	
mm_16375.1	chr2	178141805	178142005	+	1	NA	NA	NA	-28	NM_028806	74189	Mm.44413	NM_028806	ENSMUSG00000027525	Phactr3	1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224	phosphatase and actin regulator 3	protein-coding	0.015000	0.507463	
mm_34535.1	chr4	149485184	149485384	+	1	NA	NA	NA	-49	NM_026963	69151	Mm.464434	NM_026963	ENSMUSG00000028990	Lzic	1810030J04Rik|AW047580	leucine zipper and CTNNBIP1 domain containing	protein-coding	0.095000	0.676617	
mm_141048.1	chr17	25433655	25433855	-	1	NA	NA	NA	28	NM_021415	58226	Mm.268378	NM_021415	ENSMUSG00000024112	Cacna1h	Cav3.2|MNCb-1209|alpha13.2	calcium channel, voltage-dependent, T type, alpha 1H subunit	protein-coding	0.150000	0.791045	
mm_56715.1	chr6	115362127	115362327	-	1	NA	NA	NA	-122	NM_001308354	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.045000	0.641791	
mm_66948.1	chr7	61998809	61999009	-	1	NA	NA	NA	-16550	NR_037287	100526507		NR_037287	ENSMUSG00000092850	Mir344g	mir-344g|mmu-mir-344g	microRNA 344g	ncRNA	0.000000	0.398010	
mm_93492.1	chr10	112002642	112002842	-	1	NA	NA	NA	-5478	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.015000	0.472637	
mm_43100.1	chr5	124478946	124479146	+	1	NA	NA	NA	-811	NM_030259	80291	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.005000	0.492537	
mm_106169.1	chr11	116679088	116679288	-	1	NA	NA	NA	4591	NR_028570	100216538		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0.005000	0.532338	
mm_98877.1	chr11	97806222	97806422	+	1	NA	NA	NA	6650	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.010000	0.562189	
mm_97535.1	chr11	78536436	78536636	+	1	NA	NA	NA	100	NM_018854	55978	Mm.358671	NM_018854	ENSMUSG00000001105	Ift20	0610009H04Rik|AU015496	intraflagellar transport 20	protein-coding	0.095000	0.666667	
mm_105792.1	chr11	109995547	109995747	-	1	NA	NA	NA	169	NM_013851	27404	Mm.341004	NM_013851	ENSMUSG00000020620	Abca8b	Abca8	ATP-binding cassette, sub-family A (ABC1), member 8b	protein-coding	0.025000	0.427861	
mm_108296.1	chr12	79208834	79209034	+	1	NA	NA	NA	21	NM_030017	77974	Mm.274373	NM_030017	ENSMUSG00000021123	Rdh12	-	retinol dehydrogenase 12	protein-coding	0.015000	0.532338	
mm_96344.1	chr11	66956385	66956585	+	1	NA	NA	NA	-153	NR_130645	71576	Mm.340077	NR_130315	ENSMUSG00000085683	9130409J20Rik	-	RIKEN cDNA 9130409J20 gene	ncRNA	0.020000	0.512438	
mm_119704.1	chr14	53800609	53800809	+	1	NA	NA	NA	453220	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.447761	
mm_155072.1	chrX	43590867	43591067	+	1	NA	NA	NA	-22	NM_001195271	637093	Mm.368463	NM_001195271	ENSMUSG00000078320	Tex13c1	Gm362|Tex13c	TEX13 family member C1	protein-coding	0.010000	0.452736	
mm_39477.1	chr5	20416676	20416876	+	1	NA	NA	NA	465348	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.005000	0.323383	
mm_12991.1	chr2	90885444	90885644	+	1	NA	NA	NA	-242	NM_026161	67445	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0.020000	0.572139	
mm_2533.1	chr1	106980882	106981082	+	1	NA	NA	NA	-2	NM_172852	241196	Mm.110886	NM_172852	ENSMUSG00000048775	Serpinb13	5430417G24|HUR7|HURPIN|PI13|headpin	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 13	protein-coding	0.000000	0.442786	
mm_62658.1	chr7	107708882	107709082	+	1	NA	NA	NA	49050	NM_001205227	320635	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	0.020000	0.606965	
mm_114123.1	chr13	55209682	55209882	+	1	NA	NA	NA	0	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.055000	0.532338	-35(GGCTTTAAAATG,-,0.00)
mm_97352.1	chr11	77493223	77493423	+	1	NA	NA	NA	-89	NM_001004144	216963	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0.170000	0.855721	
mm_76353.1	chr8	84771877	84772077	-	1	NA	NA	NA	2392	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.045000	0.577114	40(TTGTTTAAAGGG,-,0.00)
mm_120118.1	chr14	59557358	59557558	+	1	NA	NA	NA	40501	NM_001168537	71891	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0.000000	0.502488	
mm_156264.1	chrX	136831122	136831322	+	1	NA	NA	NA	8476	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.482587	
mm_58202.1	chr6	143221348	143221548	-	1	NA	NA	NA	-24440	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.025000	0.567164	
mm_62954.1	chr7	119617698	119617898	+	1	NA	NA	NA	-30	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.010000	0.507463	
mm_24474.1	chr3	90692535	90692735	+	1	NA	NA	NA	3086	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.010000	0.442786	
mm_113585.1	chr13	40887005	40887205	+	1	NA	NA	NA	347	NM_008105	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.020000	0.492537	
mm_52736.1	chr6	120434896	120435096	+	1	NA	NA	NA	-28201	NM_008359	16172	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.000000	0.407960	
mm_51620.1	chr6	85332465	85332665	+	1	NA	NA	NA	857	NM_178639	94282	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	0.065000	0.631841	
mm_137372.1	chr17	25570803	25571003	+	1	NA	NA	NA	92	NR_045176	72834	Mm.33042	NR_045176	ENSMUSG00000091475	2810468N07Rik	-	RIKEN cDNA 2810468N07 gene	ncRNA	0.055000	0.636816	
mm_169584.1	chr15	25046316	25046516	+	1	NA	NA	NA	367348	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.015000	0.462687	
mm_109916.1	chr12	8482037	8482237	-	1	NA	NA	NA	17848	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.025000	0.567164	
mm_22671.1	chr3	14872370	14872570	+	1	NA	NA	NA	8932	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.000000	0.383085	
mm_73271.1	chr8	104540729	104540929	+	1	NA	NA	NA	22	NM_053070	12354	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	0.110000	0.731343	-54(CACTTTAAGAGG,-,0.00),-53(ACTTTAAGAGGC,+,0.00)
mm_66886.1	chr7	59242489	59242689	-	1	NA	NA	NA	13837	NM_011668	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|mKIAA4216	ubiquitin protein ligase E3A	protein-coding	0.005000	0.368159	
mm_26996.1	chr3	25824273	25824473	-	1	NA	NA	NA	328934	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.388060	
mm_142083.1	chr17	35704503	35704703	-	1	NA	NA	NA	-464	NM_172962	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.025000	0.527363	-74(TCCTTTAAGAGG,-,0.00),-73(CCTTTAAGAGGG,+,0.00),37(GTCCTTTAAAGA,-,0.00),38(TCCTTTAAAGAC,+,0.00),39(CCTTTAAAGACG,+,0.00)
mm_77298.1	chr8	117068083	117068283	-	1	NA	NA	NA	14266	NM_029686	76645	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.030000	0.582090	
mm_155230.1	chrX	57196492	57196692	+	1	NA	NA	NA	-4045	NR_038463	100502842	Mm.164733	NR_038463	ENSMUSG00000085808	Gm14718	OTTMUSG00000017790	predicted gene 14718	ncRNA	0.010000	0.447761	
mm_92869.1	chr10	81643652	81643852	-	1	NA	NA	NA	-5317	NM_001142963	100233208	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	ENSMUSG00000074860	predicted gene 10778	protein-coding	0.155000	0.736318	
mm_169233.1	chr13	68236051	68236251	-	1	NA	NA	NA	345953	NM_001308475	210009	Mm.205514	NM_172480	ENSMUSG00000034617	Mtrr	4732420G08|MSR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding	0.030000	0.572139	
mm_74781.1	chr8	22039484	22039684	-	1	NA	NA	NA	20490	NM_007511	11979	Mm.87854	NM_007511	ENSMUSG00000006567	Atp7b	Atp7a|WND|tx	ATPase, Cu++ transporting, beta polypeptide	protein-coding	0.025000	0.562189	
mm_43327.1	chr5	135009346	135009546	+	1	NA	NA	NA	-10	NR_033794	68758	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.050000	0.587065	
mm_117151.1	chr13	61203329	61203529	-	1	NA	NA	NA	-37	NM_021445	58518	Mm.143794	NM_021445	ENSMUSG00000021441	Cts6	1600022N02Rik	cathepsin 6	protein-coding	0.015000	0.492537	
mm_112383.1	chr12	119238010	119238210	-	1	NA	NA	NA	166	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.055000	0.562189	
mm_170290.1	chr18	3000065	3000265	+	1	NA	NA	NA	123247	NM_001167539	100312476	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.020000	0.462687	
mm_96292.1	chr11	63131462	63131662	+	1	NA	NA	NA	105	NM_001302255	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.065000	0.587065	
mm_159813.1	chr5	120795431	120795631	-	1	NA	NA	NA	-1	NM_145210	231699	Mm.379383	NM_145210	ENSMUSG00000066867	Oas1e	C87484|oasl7	2'-5' oligoadenylate synthetase 1E	protein-coding	0.010000	0.537313	
mm_46001.1	chr5	90654331	90654531	-	1	NA	NA	NA	-13904	NM_001310656	73246	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.020000	0.587065	
mm_70957.1	chr8	26978515	26978715	+	1	NA	NA	NA	1279	NM_001110508	353310	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.085000	0.666667	
mm_12705.1	chr2	76539873	76540073	+	1	NA	NA	NA	40967	NM_001290735	99031	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding	0.020000	0.512438	
mm_127752.1	chr15	103479083	103479283	+	1	NA	NA	NA	-23851	NM_008800	18574	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.000000	0.457711	-33(GACCTTAAAAAA,-,0.00),-31(CCTTAAAAAAGG,+,0.00)
mm_111555.1	chr12	101058634	101058834	-	1	NA	NA	NA	-23717	NR_038048	319760	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	0.020000	0.402985	11(GCTTTTAGAGCT,+,0.00)
mm_110427.1	chr12	46818923	46819123	-	1	NA	NA	NA	-248	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.095000	0.711443	
mm_93358.1	chr10	103028970	103029170	-	1	NA	NA	NA	-293	NM_172553	216285	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding	0.055000	0.641791	
mm_130476.1	chr15	98728012	98728212	-	1	NA	NA	NA	86	NM_024169	66120	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.045000	0.626866	
mm_133646.1	chr16	91793505	91793705	+	1	NA	NA	NA	64234	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.025000	0.482587	
mm_50583.1	chr6	49056494	49056694	+	1	NA	NA	NA	-17201	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.010000	0.512438	
mm_128893.1	chr15	73185210	73185410	-	1	NA	NA	NA	-363	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.130000	0.701493	
mm_157945.1	chrX	85886668	85886868	-	1	NA	NA	NA	16495	NM_001163539	71398	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	0.015000	0.422886	
mm_9150.1	chr1	170913657	170913857	-	1	NA	NA	NA	-816	NM_001029984	435653	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0.020000	0.532338	
mm_145974.1	chr18	67933987	67934187	+	1	NA	NA	NA	830	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.050000	0.592040	
mm_108635.1	chr12	85746446	85746646	+	1	NA	NA	NA	7	NM_145447	217721	Mm.301076	NM_145447	ENSMUSG00000034258	Mfsd7c	CCT|Flvcr2	major facilitator superfamily domain containing 7C	protein-coding	0.075000	0.691542	
mm_30323.1	chr3	151731765	151731965	-	1	NA	NA	NA	18094	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.000000	0.278607	
mm_48810.1	chr5	148995067	148995267	-	1	NA	NA	NA	47	NR_102383	319982	Mm.33303	NR_102383	ENSMUSG00000106951	5930430L01Rik	-	RIKEN cDNA 5930430L01 gene	ncRNA	0.050000	0.537313	
mm_130207.1	chr15	95528337	95528537	-	1	NA	NA	NA	-185	NM_001289653	54003	Mm.3959	NM_016743	ENSMUSG00000022454	Nell2	A330108N19Rik|R75516|mel91	NEL-like 2	protein-coding	0.085000	0.666667	
mm_144391.1	chr18	20669984	20670184	+	1	NA	NA	NA	4834	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.040000	0.482587	
mm_76672.1	chr8	93535732	93535932	-	1	NA	NA	NA	-125	NM_001003951	67935	Mm.65457	NM_001003951	ENSMUSG00000058019	Ces5a	1700081L16Rik|1700122C07Rik|BB081581|Ces7|Gm503|cauxin	carboxylesterase 5A	protein-coding	0.020000	0.432836	
mm_152115.1	chr19	6979785	6979985	-	1	NA	NA	NA	555	NM_008020	14227	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	13kDa|FKBP-2|mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0.080000	0.681592	
mm_52893.1	chr6	122607862	122608062	+	1	NA	NA	NA	2125	NM_008108	14562	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0.020000	0.492537	
mm_26442.1	chr3	142633370	142633570	+	1	NA	NA	NA	-9524	NR_105802	102465200		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.005000	0.437811	
mm_121032.1	chr14	79769820	79770020	+	1	NA	NA	NA	1392	NM_001042726	18530	Mm.390715	NM_021543	ENSMUSG00000036422	Pcdh8	1700080P15Rik|Papc	protocadherin 8	protein-coding	0.145000	0.741294	
mm_646.1	chr1	40424036	40424236	+	1	NA	NA	NA	-5434	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.020000	0.482587	
mm_66174.1	chr7	33944988	33945188	-	1	NA	NA	NA	-103	NM_178308	110187	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	0.005000	0.502488	71(TGTTTTATAAGG,-,0.00)
mm_139176.1	chr17	47590609	47590809	+	1	NA	NA	NA	-2758	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.010000	0.512438	
mm_140136.1	chr17	79650202	79650402	+	1	NA	NA	NA	35402	NM_201361	381110	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.020000	0.427861	
mm_82599.1	chr9	21312241	21312441	-	1	NA	NA	NA	-8	NM_001110300	11768	Mm.22239	NM_009678	ENSMUSG00000003309	Ap1m2	D9Ertd818e|[m]1B|mu1B	adaptor protein complex AP-1, mu 2 subunit	protein-coding	0.095000	0.661692	-58(CCTTTAAGACGC,+,0.00),-28(CCTTTAAGACGC,+,0.00)
mm_60184.1	chr7	43213936	43214136	+	1	NA	NA	NA	-3	NM_001177525	100170401		NM_001177525		EU599041	TU7	expressed sequence EU599041	protein-coding	0.020000	0.567164	
mm_59090.1	chr7	19696335	19696535	+	1	NA	NA	NA	1963	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.025000	0.567164	
mm_97125.1	chr11	74925794	74925994	+	1	NA	NA	NA	22	NM_001002764	103677	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.130000	0.726368	
mm_64856.1	chr7	13035404	13035604	-	1	NA	NA	NA	-727	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.030000	0.587065	
mm_85920.1	chr9	111271442	111271642	-	1	NA	NA	NA	66	NM_026810	17350	Mm.486383	NM_026810	ENSMUSG00000032498	Mlh1	1110035C23Rik|AI317206|AI325952|AI561766	mutL homolog 1	protein-coding	0.090000	0.601990	
mm_36616.1	chr4	89294471	89294671	-	1	NA	NA	NA	48	NM_009877	12578	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin-dependent kinase inhibitor 2A	protein-coding	0.100000	0.691542	
mm_142336.1	chr17	43568417	43568617	-	1	NA	NA	NA	66	NM_013737	27226	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.040000	0.646766	
mm_94121.1	chr10	128645700	128645900	-	1	NA	NA	NA	193	NM_011772	22781	Mm.358648	NM_011772	ENSMUSG00000002578	Ikzf4	A630026H08Rik|Eos|Zfpn1a4|Znfn1a4	IKAROS family zinc finger 4	protein-coding	0.080000	0.636816	
mm_147662.1	chr18	60609963	60610163	-	1	NA	NA	NA	41	NM_001109975	104027	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	0.025000	0.537313	-77(CCATTTAAAAGG,+,0.00),-77(CCATTTAAAAGG,-,0.00)
mm_101099.1	chr11	11898021	11898221	-	1	NA	NA	NA	23	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.020000	0.442786	
mm_126637.1	chr15	83565344	83565544	+	1	NA	NA	NA	1871	NM_009775	12257	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	0.005000	0.537313	
mm_86852.1	chr10	21593094	21593294	+	1	NA	NA	NA	49	NR_027968	67692	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.070000	0.597015	
mm_36429.1	chr4	82293790	82293990	-	1	NA	NA	NA	211889	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.005000	0.378109	
mm_160821.1	chr11	30219589	30219789	-	1	NA	NA	NA	83	NM_175836	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.025000	0.487562	
mm_111722.1	chr12	103740118	103740318	-	1	NA	NA	NA	-2029	NM_009244	20701	Mm.439692	NM_009244	ENSMUSG00000071178	Serpina1b	D12Ucla2|Dom2|PI2|Spi1-2	serine (or cysteine) preptidase inhibitor, clade A, member 1B	protein-coding	0.005000	0.567164	
mm_22337.1	chr2	180709901	180710101	-	1	NA	NA	NA	-2	NM_001291432	23856	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.100000	0.601990	
mm_172327.1	chr7	107242912	107243112	+	1	NA	NA	NA	33567	NM_029660	76572	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	0.005000	0.517413	
mm_144180.1	chr18	6765140	6765340	+	1	NA	NA	NA	73	NM_001278447	19330	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.075000	0.656716	
mm_119365.1	chr14	41121301	41121501	+	1	NA	NA	NA	-10387	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.030000	0.592040	
mm_72685.1	chr8	84966660	84966860	+	1	NA	NA	NA	-749	NM_027187	69724	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	0.010000	0.507463	
mm_84800.1	chr9	77251734	77251934	-	1	NA	NA	NA	96036	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.020000	0.507463	
mm_153558.1	chr19	42142053	42142253	-	1	NA	NA	NA	-5236	NM_183195	277010	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0.010000	0.532338	
mm_161750.1	chr17	34670254	34670454	+	1	NA	NA	NA	-181	NM_031176	81877	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	0.015000	0.492537	
mm_86140.1	chr9	116979045	116979245	-	1	NA	NA	NA	273338	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.020000	0.502488	
mm_43500.1	chr5	136973820	136974020	+	1	NA	NA	NA	6051	NM_021719	60363	Mm.87202	NM_021719	ENSMUSG00000001739	Cldn15	2210009B08Rik|BB107105	claudin 15	protein-coding	0.015000	0.502488	
mm_61525.1	chr7	78914224	78914424	+	1	NA	NA	NA	89	NM_001113527	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.010000	0.641791	
mm_22311.1	chr2	180439385	180439585	-	1	NA	NA	NA	-21493	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.015000	0.527363	
mm_77679.1	chr8	125538336	125538536	-	1	NA	NA	NA	-45726	NM_001081337	244668	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.010000	0.517413	
mm_121751.1	chr14	18896623	18896823	-	1	NA	NA	NA	-3096	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0.050000	0.537313	-33(GCCTATAAAAGC,-,0.00)
mm_74385.1	chr8	128720346	128720546	+	1	NA	NA	NA	34792	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.005000	0.482587	
mm_68670.1	chr7	118973614	118973814	-	1	NA	NA	NA	21497	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.015000	0.447761	-78(TTCTATAAAAAC,-,0.00),-49(CCTTTAATGCAA,+,0.00),-37(ATTTTTAAAAGG,-,0.00)
mm_1364.1	chr1	66386884	66387084	+	1	NA	NA	NA	65260	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.025000	0.532338	
mm_33577.1	chr4	132351673	132351873	+	1	NA	NA	NA	1913	NR_003270	399101	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0.005000	0.467662	
mm_141270.1	chr17	27753751	27753951	-	1	NA	NA	NA	-24900	NM_013891	30051	Mm.26768	NM_013891	ENSMUSG00000024215	Spdef	PDEF|Pse	SAM pointed domain containing ets transcription factor	protein-coding	0.010000	0.517413	
mm_11331.1	chr2	30441971	30442171	+	1	NA	NA	NA	26021	NM_138748	110854	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.030000	0.487562	
mm_104065.1	chr11	86584990	86585190	-	1	NA	NA	NA	-932	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.402985	
mm_135511.1	chr16	48589247	48589447	-	1	NA	NA	NA	158110	NM_010816	17450	Mm.250060	NM_010816	ENSMUSG00000022652	Morc1	Morc	microrchidia 1	protein-coding	0.035000	0.492537	
mm_122993.1	chr14	54990275	54990475	-	1	NA	NA	NA	4174	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.005000	0.427861	
mm_85407.1	chr9	103365650	103365850	-	1	NA	NA	NA	30	NM_175833	321022	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.115000	0.766169	
mm_130767.1	chr15	101374902	101375102	-	1	NA	NA	NA	-4877	NM_028770	74127	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0.005000	0.552239	
mm_53258.1	chr6	127887633	127887833	+	1	NA	NA	NA	111	NM_026743	68498	Mm.174368	NM_026743	ENSMUSG00000030351	Tspan11	1110014F12Rik|AU067806	tetraspanin 11	protein-coding	0.055000	0.671642	
mm_48288.1	chr5	138184617	138184817	-	1	NA	NA	NA	2469	NM_009315	21343	Mm.248517	NM_009315	ENSMUSG00000036980	Taf6	80kDa|AW549759|TAF(II)80|TAFII70|Taf2e|p80	TATA-box binding protein associated factor 6	protein-coding	0.005000	0.452736	30(GTGTCTAAAAGG,-,0.00)
mm_16516.1	chr2	181381236	181381436	+	1	NA	NA	NA	101	NM_023684	72699	Mm.440138	NM_023684	ENSMUSG00000090077	Lime1	2810038K19Rik|LIME	Lck interacting transmembrane adaptor 1	protein-coding	0.020000	0.601990	
mm_136609.1	chr17	5324863	5325063	+	1	NA	NA	NA	93804	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.000000	0.328358	
mm_127187.1	chr15	99029820	99030020	+	1	NA	NA	NA	29	NM_009448	22146	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.060000	0.656716	
mm_25788.1	chr3	126803215	126803415	+	1	NA	NA	NA	140071	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.010000	0.358209	
mm_160324.1	chr8	3258707	3258907	-	1	NA	NA	NA	20810	NM_010568	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.015000	0.492537	
mm_82889.1	chr9	32541328	32541528	-	1	NA	NA	NA	24	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.045000	0.507463	
mm_45586.1	chr5	74068300	74068500	-	1	NA	NA	NA	11	NM_177561	69727	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.165000	0.796020	
mm_40023.1	chr5	33336958	33337158	+	1	NA	NA	NA	1486	NM_021500	59003	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	0.005000	0.373134	
mm_10596.1	chr2	18676961	18677161	+	1	NA	NA	NA	43	NM_007552	12151	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	0.115000	0.686567	-36(TAGTATTAAAGG,-,0.00)
mm_137786.1	chr17	29549691	29549891	+	1	NA	NA	NA	-11	NM_198647	381085	Mm.328934	NM_198647	ENSMUSG00000042203	Tbc1d22b	BC045600	TBC1 domain family, member 22B	protein-coding	0.085000	0.726368	
mm_3000.1	chr1	133245996	133246196	+	1	NA	NA	NA	-1	NM_001160268	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding	0.020000	0.517413	-34(GGGTATTAAAGG,-,0.00)
mm_98999.1	chr11	98795731	98795931	+	1	NA	NA	NA	62	NM_028722	74026	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male-specific lethal 1 homolog (Drosophila)	protein-coding	0.115000	0.741294	
mm_50929.1	chr6	57662913	57663113	+	1	NA	NA	NA	29065	NM_025574	66459	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	0.005000	0.343284	
mm_149857.1	chr19	25095330	25095530	+	1	NA	NA	NA	95901	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.010000	0.502488	
mm_172065.1	chr6	135362950	135363150	+	1	NA	NA	NA	119	NM_001288628	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.010000	0.562189	
mm_81560.1	chr9	110380845	110381045	+	1	NA	NA	NA	27265	NM_001081043	104831	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.050000	0.636816	
mm_97883.1	chr11	83291577	83291777	+	1	NA	NA	NA	-22	NR_028363	613254	Mm.383758	NR_028363	ENSMUSG00000093483	AA465934	-	expressed sequence AA465934	ncRNA	0.080000	0.626866	
mm_87622.1	chr10	57800900	57801100	+	1	NA	NA	NA	6456	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.020000	0.447761	
mm_71118.1	chr8	36094790	36094990	+	1	NA	NA	NA	62	NM_172911	244418	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.140000	0.746269	
mm_29207.1	chr3	106789916	106790116	-	1	NA	NA	NA	133	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.005000	0.398010	
mm_23773.1	chr3	75562816	75563016	+	1	NA	NA	NA	5383	NM_009250	20713	Mm.41560	NM_009250	ENSMUSG00000027834	Serpini1	AI837402|Ns|PI-12|PI12|Spi17	serine (or cysteine) peptidase inhibitor, clade I, member 1	protein-coding	0.005000	0.432836	
mm_140390.1	chr17	87283111	87283311	+	1	NA	NA	NA	325	NM_028639	225049	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.090000	0.701493	
mm_44755.1	chr5	31489030	31489230	-	1	NA	NA	NA	3271	NM_026296	67656	Mm.23355	NM_026296	ENSMUSG00000029138	4930548H24Rik	AI427865	RIKEN cDNA 4930548H24 gene	protein-coding	0.015000	0.472637	
mm_32998.1	chr4	120517397	120517597	+	1	NA	NA	NA	-14734	NM_177570	194219	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	0.010000	0.442786	
mm_275.1	chr1	21240513	21240713	+	1	NA	NA	NA	28	NM_010356	14859	Mm.394593	NM_010356	ENSMUSG00000025934	Gsta3	Gst2-3	glutathione S-transferase, alpha 3	protein-coding	0.005000	0.393035	18(CTTTTTAGAGGG,+,0.00)
mm_140427.1	chr17	88042619	88042819	+	1	NA	NA	NA	22566	NM_001081034	225055	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.010000	0.467662	
mm_135319.1	chr16	38781075	38781275	-	1	NA	NA	NA	19028	NM_178924	22268	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0.010000	0.398010	
mm_20127.1	chr2	121300602	121300802	-	1	NA	NA	NA	5248	NM_001173506	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.010000	0.447761	
mm_57957.1	chr6	135197841	135198041	-	1	NA	NA	NA	-46	NM_028982	74525	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|Kiaa1467|mKIAA1467	family with sequence similarity 234, member B	protein-coding	0.105000	0.671642	
mm_8621.1	chr1	156204915	156205115	-	1	NA	NA	NA	11	NM_177838	329274	Mm.150857	NM_177838	ENSMUSG00000015484	Fam163a	A230106N23Rik	family with sequence similarity 163, member A	protein-coding	0.080000	0.716418	
mm_136348.1	chr16	92677370	92677570	-	1	NA	NA	NA	19859	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.000000	0.477612	
mm_116131.1	chr13	28953293	28953493	-	1	NA	NA	NA	289	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.070000	0.577114	
mm_122779.1	chr14	54410032	54410232	-	1	NA	NA	NA	-660	NM_001253680	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.015000	0.547264	
mm_27864.1	chr3	79158971	79159171	-	1	NA	NA	NA	-13196	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.577114	
mm_79690.1	chr9	60482633	60482833	+	1	NA	NA	NA	28302	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.025000	0.567164	
mm_82689.1	chr9	22321374	22321574	-	1	NA	NA	NA	9216	NR_033622	625603	Mm.37987	NR_033622		Gm6607	EG625603	40S ribosomal protein S20 pseudogene	pseudo	0.070000	0.527363	
mm_165749.1	chr3	107852756	107852956	-	1	NA	NA	NA	-24374	NM_133867	99662	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0.020000	0.582090	
mm_55754.1	chr6	78378757	78378957	-	1	NA	NA	NA	8	NM_001161741	30053	Mm.33691	NM_013893	ENSMUSG00000068341	Reg3d	INGAP|Ingaprp	regenerating islet-derived 3 delta	protein-coding	0.005000	0.477612	-19(TCGTTTTAAAAG,-,0.00),-17(GTTTTAAAAGTG,+,0.00)
mm_59726.1	chr7	28788159	28788359	+	1	NA	NA	NA	-710	NM_177158	320435	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0.010000	0.497512	
mm_13683.1	chr2	116972313	116972513	+	1	NA	NA	NA	72261	NR_040335	320975	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.030000	0.507463	
mm_19091.1	chr2	79368980	79369180	-	1	NA	NA	NA	59908	NM_001048176	228094	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0.020000	0.457711	
mm_125246.1	chr15	34495275	34495475	+	1	NA	NA	NA	64	NM_152894	67724	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0.090000	0.646766	
mm_46826.1	chr5	113213289	113213489	-	1	NA	NA	NA	-13520	NM_001033428	333048	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	0.005000	0.482587	
mm_106154.1	chr11	116623701	116623901	-	1	NA	NA	NA	451	NM_001167680	217344	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.055000	0.582090	-38(CCTTTTAGACCT,+,0.00)
mm_156739.1	chrX	159942887	159943087	+	1	NA	NA	NA	294	NM_001290664	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.000000	0.487562	
mm_33802.1	chr4	134930805	134931005	+	1	NA	NA	NA	-75	NM_026780	68592	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0.100000	0.661692	
mm_132938.1	chr16	49856134	49856334	+	1	NA	NA	NA	580	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.040000	0.582090	
mm_129452.1	chr15	78561873	78562073	-	1	NA	NA	NA	10810	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.035000	0.592040	
mm_65294.1	chr7	24507346	24507546	-	1	NA	NA	NA	359	NR_110958	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.145000	0.771144	
mm_159808.1	chr5	117866705	117866905	+	1	NA	NA	NA	-34	NM_008712	18125	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.015000	0.557214	
mm_129986.1	chr15	86058483	86058683	-	1	NA	NA	NA	-144	NM_001205353	223752	Mm.24442	NM_172611	ENSMUSG00000035900	Gramd4	9930016O13	GRAM domain containing 4	protein-coding	0.145000	0.691542	
mm_170409.1	chr18	65798387	65798587	-	1	NA	NA	NA	-2091	NM_025468	66286	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0.000000	0.507463	
mm_66671.1	chr7	45731485	45731685	-	1	NA	NA	NA	-5769	NM_027055	69363	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	0.005000	0.562189	
mm_142864.1	chr17	51814133	51814333	-	1	NA	NA	NA	-2179	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.010000	0.338308	-100(TGCTTTAAAAAA,-,0.00)
mm_154383.1	chrM	11297	11497	+	1	NA	NA	NA	NA	NA									0.015000	0.313433	
mm_135316.1	chr16	38713299	38713499	-	1	NA	NA	NA	-364	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.050000	0.572139	
mm_97978.1	chr11	83875442	83875642	+	1	NA	NA	NA	22582	NM_001291269	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.000000	0.477612	
mm_144224.1	chr18	9957867	9958067	+	1	NA	NA	NA	-213	NM_153552	225160	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	0.080000	0.621891	
mm_137088.1	chr17	21489004	21489204	+	1	NA	NA	NA	116	NM_013843	24132	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	0.060000	0.587065	
mm_162148.1	chrX	74836955	74837155	+	1	NA	NA	NA	-141	NM_001081670	546325	Mm.436644	NM_001081670	ENSMUSG00000079531	Gm5936	EG546325	predicted gene 5936	protein-coding	0.010000	0.517413	
mm_87234.1	chr10	40672990	40673190	+	1	NA	NA	NA	-10192	NM_177793	327747	Mm.80407	NM_177793	ENSMUSG00000045555	Mettl24	9030224M15Rik	methyltransferase like 24	protein-coding	0.025000	0.557214	
mm_37623.1	chr4	127326133	127326333	-	1	NA	NA	NA	2892	NM_008126	14620	Mm.90003	NM_008126	ENSMUSG00000042367	Gjb3	Cnx31|Cx31|D4Wsu144e|Gjb-3	gap junction protein, beta 3	protein-coding	0.060000	0.542289	
mm_127357.1	chr15	100641128	100641328	+	1	NA	NA	NA	-4288	NM_001033872	207818	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.030000	0.492537	
mm_138048.1	chr17	33925911	33926111	+	1	NA	NA	NA	-3883	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.015000	0.572139	
mm_108460.1	chr12	83424554	83424754	+	1	NA	NA	NA	63082	NM_001267626	70127	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0.015000	0.477612	
mm_146858.1	chr18	24433409	24433609	-	1	NA	NA	NA	-4339	NR_029573	387182		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0.000000	0.378109	
mm_129966.1	chr15	85581838	85582038	-	1	NA	NA	NA	-117	NM_009528	22422	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	0.120000	0.736318	
mm_112979.1	chr13	21312109	21312309	+	1	NA	NA	NA	6	NM_145451	75512	Mm.46195	NM_145451	ENSMUSG00000004341	Gpx6	1700020G18Rik|Ry2d1|olfactory	glutathione peroxidase 6	protein-coding	0.005000	0.507463	
mm_149089.1	chr19	8922030	8922230	+	1	NA	NA	NA	1737	NM_024256	72727	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	0.015000	0.353234	
mm_70658.1	chr8	14651621	14651821	+	1	NA	NA	NA	-236815	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.010000	0.497512	-41(GCTCATAAATGG,-,0.00),75(CCTTATATGTTC,+,0.00)
mm_30827.1	chr4	21874332	21874532	+	1	NA	NA	NA	-5243	NM_172687	230027	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	0.010000	0.348259	
mm_1338.1	chr1	66175074	66175274	+	1	NA	NA	NA	-155	NM_008632	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.110000	0.791045	
mm_60489.1	chr7	44478515	44478715	+	1	NA	NA	NA	-5902	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.497512	
mm_24264.1	chr3	89187783	89187983	+	1	NA	NA	NA	4658	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.015000	0.477612	
mm_18416.1	chr2	60705478	60705678	-	1	NA	NA	NA	17025	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.030000	0.572139	
mm_93879.1	chr10	125308697	125308897	-	1	NA	NA	NA	19738	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.035000	0.532338	
mm_96027.1	chr11	59548858	59549058	+	1	NA	NA	NA	6272	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.035000	0.552239	
mm_100113.1	chr11	115823963	115824163	+	1	NA	NA	NA	5	NM_001252532	217325	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	lethal giant larvae homolog 2 (Drosophila)	protein-coding	0.125000	0.761194	
mm_6525.1	chr1	74588031	74588231	-	1	NA	NA	NA	-103	NM_029888	77264	Mm.207298	NM_029888	ENSMUSG00000026135	Zfp142	9330177B18Rik|BB154236|mKIAA0236	zinc finger protein 142	protein-coding	0.045000	0.601990	
mm_168420.1	chr11	33160760	33160960	-	1	NA	NA	NA	2346	NM_001252261	18148	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	0.005000	0.363184	
mm_13329.1	chr2	102784681	102784881	+	1	NA	NA	NA	78343	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.005000	0.432836	49(TTCTATAAAAGA,-,0.00)
mm_149387.1	chr19	11386382	11386582	+	1	NA	NA	NA	10994	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.000000	0.298507	
mm_93771.1	chr10	120363639	120363839	-	1	NA	NA	NA	-25784	NR_040626	320626	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	0.005000	0.368159	
mm_63869.1	chr7	135715828	135716028	+	1	NA	NA	NA	451	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.090000	0.626866	
mm_17641.1	chr2	31163434	31163634	-	1	NA	NA	NA	11218	NM_178760	277463	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0.020000	0.462687	
mm_7249.1	chr1	93654105	93654305	-	1	NA	NA	NA	-18478	NM_021537	59041	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.000000	0.437811	-48(TTCTATATAAGG,-,0.00),-34(ACTTATATAAGG,-,0.00)
mm_83487.1	chr9	45944952	45945152	-	1	NA	NA	NA	-5462	NR_106055	102465659		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.010000	0.492537	
mm_63126.1	chr7	122999748	122999948	+	1	NA	NA	NA	29284	NM_175023	19647	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6	protein-coding	0.020000	0.417910	
mm_138016.1	chr17	33909489	33909689	+	1	NA	NA	NA	-12	NM_001199733	13163	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0.100000	0.691542	
mm_44258.1	chr5	5479028	5479228	-	1	NA	NA	NA	15	NM_001200025	381716	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding	0.025000	0.522388	
mm_38543.1	chr4	141598138	141598338	-	1	NA	NA	NA	1686	NM_001163256	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.010000	0.532338	
mm_115080.1	chr13	102410720	102410920	+	1	NA	NA	NA	-282738	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.025000	0.507463	
mm_80307.1	chr9	74110254	74110454	+	1	NA	NA	NA	20	NM_001033500	546144	Mm.335289	NM_177908	ENSMUSG00000044976	Wdr72	AW558070|D230040E23	WD repeat domain 72	protein-coding	0.055000	0.691542	
mm_7558.1	chr1	124708941	124709141	-	1	NA	NA	NA	-663482	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.358209	
mm_160959.1	chr11	98550985	98551185	+	1	NA	NA	NA	-12	NM_199419	69376	Mm.55996	NM_027061	ENSMUSG00000017195	Zpbp2	1700017D11Rik|2610022C02Rik|ZPBPL	zona pellucida binding protein 2	protein-coding	0.105000	0.701493	
mm_66450.1	chr7	44869473	44869673	-	1	NA	NA	NA	215	NM_133949	84113	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0.175000	0.825871	
mm_111544.1	chr12	100899342	100899542	-	1	NA	NA	NA	82	NM_001177674	238377	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.060000	0.666667	
mm_111395.1	chr12	90728111	90728311	-	1	NA	NA	NA	10826	NM_010050	13371	Mm.21389	NM_010050	ENSMUSG00000007682	Dio2	5DII|AI324267|DIOII	deiodinase, iodothyronine, type II	protein-coding	0.000000	0.338308	
mm_106777.1	chr12	4633386	4633586	+	1	NA	NA	NA	40478	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.005000	0.338308	
mm_89920.1	chr10	111204741	111204941	+	1	NA	NA	NA	40039	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.015000	0.407960	
mm_127899.1	chr15	9506656	9506856	-	1	NA	NA	NA	23120	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.005000	0.432836	
mm_155590.1	chrX	81070593	81070793	+	1	NA	NA	NA	49	NM_138751	192216	Mm.490421	NM_138751	ENSMUSG00000025666	Tmem47	3010015F07Rik|AI115536|BCMP1|Tm4sf10	transmembrane protein 47	protein-coding	0.095000	0.696517	
mm_15367.1	chr2	156420999	156421199	+	1	NA	NA	NA	190	NM_001291123	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.120000	0.726368	
mm_124241.1	chr14	101478852	101479052	-	1	NA	NA	NA	130239	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.025000	0.378109	
mm_6642.1	chr1	79439925	79440125	-	1	NA	NA	NA	65	NM_009129	20254	Mm.5038	NM_009129	ENSMUSG00000050711	Scg2	Chgc|SgII	secretogranin II	protein-coding	0.060000	0.572139	-33(CTCTCTATAAGC,-,0.00)
mm_162539.1	chr1	168582729	168582929	-	1	NA	NA	NA	92186	NR_105766	102465178		NR_105766	ENSMUSG00000098407	Mir6348	Gm27412|mmu-mir-6348	microRNA 6348	ncRNA	0.005000	0.457711	
mm_163786.1	chr13	120312061	120312261	-	1	NA	NA	NA	-4701	NM_153523	236219	Mm.302175	NM_153523	ENSMUSG00000095821	Tcstv3	-	2-cell-stage, variable group, member 3	protein-coding	0.005000	0.462687	-33(GCCTATATAAAG,-,0.00),-31(CTATATAAAGAC,+,0.00)
mm_101450.1	chr11	30198116	30198316	-	1	NA	NA	NA	41	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.040000	0.542289	
mm_9170.1	chr1	170976016	170976216	-	1	NA	NA	NA	-45	NM_010187	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.015000	0.477612	
mm_91333.1	chr10	25299116	25299316	-	1	NA	NA	NA	-53	NM_018747	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.050000	0.527363	-32(GTTTAAAAACCC,+,0.00)
mm_5083.1	chr1	4493506	4493706	-	1	NA	NA	NA	3748	NM_001289464	20671	Mm.279103	NM_011441	ENSMUSG00000025902	Sox17	-	SRY (sex determining region Y)-box 17	protein-coding	0.085000	0.666667	
mm_16536.1	chr2	181579465	181579665	+	1	NA	NA	NA	33	NR_027290	100271841	Mm.438007	NR_027289	ENSMUSG00000010492	Uckl1os	Gm16119|OTTMUSG00000030649	uridine-cytidine kinase 1-like 1, opposite strand	ncRNA	0.015000	0.562189	
mm_31336.1	chr4	46468591	46468791	+	1	NA	NA	NA	17765	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.020000	0.547264	
mm_110482.1	chr12	51866336	51866536	-	1	NA	NA	NA	-36900	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.020000	0.487562	-7(CACTATAAAAAG,-,0.00)
mm_12949.1	chr2	87566123	87566323	+	1	NA	NA	NA	-8863	NM_001011836	258111	Mm.376122	NM_001011836	ENSMUSG00000062272	Olfr1129	MOR264-23|MOR264-9P	olfactory receptor 1129	protein-coding	0.000000	0.522388	
mm_91258.1	chr10	23185466	23185666	-	1	NA	NA	NA	164324	NM_001347372	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.005000	0.482587	
mm_119282.1	chr14	34375394	34375594	+	1	NA	NA	NA	-10	NM_153127	105450	Mm.272673	NM_153127	ENSMUSG00000041445	Mmrn2	AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1	multimerin 2	protein-coding	0.035000	0.567164	
mm_66010.1	chr7	30588635	30588835	-	1	NA	NA	NA	-9	NM_029274	75410	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	0.125000	0.810945	
mm_70852.1	chr8	23535098	23535298	+	1	NA	NA	NA	123696	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding	0.005000	0.492537	
mm_71057.1	chr8	33732116	33732316	+	1	NA	NA	NA	-123	NM_001167922	68153	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	0.145000	0.726368	78(TCTTTTAGGCCG,+,0.00)
mm_121976.1	chr14	25768958	25769158	-	1	NA	NA	NA	-202	NM_001101433	71918	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.140000	0.761194	
mm_162283.1	chr1	20869874	20870074	-	1	NA	NA	NA	20499	NR_040492	77741	Mm.159984	NR_040492	ENSMUSG00000097934	6720483E21Rik	-	RIKEN cDNA 6720483E21 gene	ncRNA	0.005000	0.432836	
mm_97338.1	chr11	77348164	77348364	+	1	NA	NA	NA	-16	NM_001291190	237860	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot homolog 2 (Drosophila)	protein-coding	0.125000	0.781095	
mm_144222.1	chr18	9848621	9848821	+	1	NA	NA	NA	-109459	NM_153552	225160	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	0.005000	0.477612	
mm_135648.1	chr16	52388762	52388962	-	1	NA	NA	NA	64219	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.233831	13(GACCATAAAAGT,-,0.00)
mm_15197.1	chr2	154206332	154206532	+	1	NA	NA	NA	6052	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.025000	0.557214	
mm_82322.1	chr9	8004504	8004704	-	1	NA	NA	NA	-8	NM_009534	22601	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	0.140000	0.706468	
mm_111921.1	chr12	108875528	108875728	-	1	NA	NA	NA	17570	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.020000	0.532338	
mm_85547.1	chr9	106685276	106685476	-	1	NA	NA	NA	440	NM_011573	21767	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.090000	0.661692	-30(GTCCCTTTAAGG,-,0.00),-29(TCCCTTTAAGGG,-,0.00),-28(CCCTTTAAGGGC,+,0.00),-27(CCTTTAAGGGCC,+,0.00)
mm_68412.1	chr7	109637513	109637713	-	1	NA	NA	NA	-20466	NM_029811	76954	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.010000	0.482587	
mm_148069.1	chr18	72341610	72341810	-	1	NA	NA	NA	9359	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.000000	0.293532	
mm_66136.1	chr7	31110911	31111111	-	1	NA	NA	NA	-14	NM_001276269	15451	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0.035000	0.527363	
mm_86382.1	chr9	123861917	123862117	-	1	NA	NA	NA	12	NM_011798	23832	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0.010000	0.412935	
mm_43742.1	chr5	140062365	140062565	+	1	NA	NA	NA	154522	NM_175522	243312	Mm.237102	NM_175522	ENSMUSG00000048988	Elfn1	A930017N06Rik|AI197272|Ppp1r28	leucine rich repeat and fibronectin type III, extracellular 1	protein-coding	0.005000	0.502488	
mm_121762.1	chr14	19751035	19751235	-	1	NA	NA	NA	-122	NM_008695	18074	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.045000	0.582090	
mm_150.1	chr1	11299367	11299567	+	1	NA	NA	NA	35504	NM_001033636	109294	Mm.123247	NM_029525	ENSMUSG00000048960	Prex2	6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	protein-coding	0.015000	0.442786	
mm_105086.1	chr11	100848309	100848509	-	1	NA	NA	NA	2176	NM_001113563	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.000000	0.412935	
mm_7556.1	chr1	124700472	124700672	-	1	NA	NA	NA	-655013	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.432836	
mm_99880.1	chr11	109426088	109426288	+	1	NA	NA	NA	-32	NM_001252193	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.070000	0.641791	
mm_169362.1	chr14	31917523	31917723	-	1	NA	NA	NA	-87208	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.050000	0.527363	-30(TTCTATAAAAGT,-,0.00)
mm_4048.1	chr1	165788561	165788761	+	1	NA	NA	NA	-20	NM_031162	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.015000	0.522388	
mm_48408.1	chr5	140261479	140261679	-	1	NA	NA	NA	59973	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.010000	0.512438	
mm_131378.1	chr16	13940642	13940842	+	1	NA	NA	NA	77	NM_033564	93734	Mm.76554	NM_033564	ENSMUSG00000022679	Mpv17l	M-LP	Mpv17 transgene, kidney disease mutant-like	protein-coding	0.085000	0.676617	
mm_75911.1	chr8	71395708	71395908	-	1	NA	NA	NA	-7	NM_181418	234395	Mm.34874	NM_181418	ENSMUSG00000034911	Ushbp1	2210404N08Rik|9430064H24|AIEBP|MCC2	Usher syndrome 1C binding protein 1	protein-coding	0.020000	0.577114	
mm_169580.1	chr1	52312880	52313080	+	1	NA	NA	NA	-79748	NM_001113383	14660	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.040000	0.462687	-90(GTTTAAATAGAC,+,0.00),-33(TTCTATAAAAAC,-,0.00)
mm_101033.1	chr11	8589340	8589540	-	1	NA	NA	NA	75095	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.015000	0.427861	
mm_31052.1	chr4	41152880	41153080	+	1	NA	NA	NA	16959	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.020000	0.447761	
mm_93547.1	chr10	116113811	116114011	-	1	NA	NA	NA	6	NM_001161855	619332	Mm.391427	NM_001033821	ENSMUSG00000074734	4933416C03Rik	-	RIKEN cDNA 4933416C03 gene	protein-coding	0.065000	0.676617	
mm_17589.1	chr2	30474117	30474317	-	1	NA	NA	NA	-18	NM_030244	72500	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.110000	0.671642	
mm_15128.1	chr2	153874883	153875083	+	1	NA	NA	NA	-62	NM_025631	66557	Mm.46448	NM_025631	ENSMUSG00000027481	Bpifb2	2310034L21Rik|2310069A01Rik|AV089125|Bpil1|LPLUNC2|RYSR	BPI fold containing family B, member 2	protein-coding	0.025000	0.577114	58(CCTCATAAAGCA,+,0.00)
mm_9479.1	chr1	173367579	173367779	-	1	NA	NA	NA	16	NM_053199	94332	Mm.330524	NM_053199	ENSMUSG00000005338	Cadm3	BIgR|Igsf4b|Necl-1|Necl1|SynCAM3|Tsll1	cell adhesion molecule 3	protein-coding	0.090000	0.706468	
mm_38987.1	chr4	151057851	151058051	-	1	NA	NA	NA	2	NM_009498	22319	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	0.155000	0.701493	
mm_141913.1	chr17	34982384	34982584	-	1	NA	NA	NA	354	NM_030597	27756	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.050000	0.537313	
mm_107456.1	chr12	37108538	37108738	+	1	NA	NA	NA	92	NM_008584	17286	Mm.341398	NM_008584	ENSMUSG00000036144	Meox2	AI528662|Gax|Mox-2|Mox2	mesenchyme homeobox 2	protein-coding	0.040000	0.547264	
mm_130573.1	chr15	99474616	99474816	-	1	NA	NA	NA	14	NM_029236	75284	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	0.080000	0.651741	
mm_109715.1	chr12	115258006	115258206	+	1	NA	NA	NA	437688	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.000000	0.422886	
mm_46051.1	chr5	92112162	92112362	-	1	NA	NA	NA	-25676	NM_019490	56041	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0.020000	0.442786	
mm_10198.1	chr2	4928563	4928763	+	1	NA	NA	NA	9667	NM_010726	16922	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.015000	0.417910	
mm_86991.1	chr10	25536281	25536481	+	1	NA	NA	NA	-5	NR_136909	102640597	Mm.412041	NR_136909	ENSMUSG00000101537	Gm29571	-	predicted gene 29571	ncRNA	0.010000	0.472637	
mm_125888.1	chr15	75863155	75863355	+	1	NA	NA	NA	916	NM_026960	69146	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	0.020000	0.572139	
mm_168503.1	chr1	153407467	153407667	-	1	NA	NA	NA	6666	NR_033736	626058	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0.030000	0.507463	
mm_8918.1	chr1	163313595	163313795	-	1	NA	NA	NA	-45	NM_175686	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.015000	0.537313	
mm_27905.1	chr3	79511087	79511287	-	1	NA	NA	NA	56492	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.010000	0.477612	
mm_36943.1	chr4	108780730	108780930	-	1	NA	NA	NA	258	NM_001347163	230597	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	0.165000	0.830846	
mm_16357.1	chr2	174439000	174439200	+	1	NA	NA	NA	-61	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.050000	0.631841	
mm_57983.1	chr6	135733512	135733712	-	1	NA	NA	NA	74699	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	0.015000	0.512438	
mm_32190.1	chr4	101217701	101217901	+	1	NA	NA	NA	47481	NM_146145	16451	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.020000	0.442786	
mm_118520.1	chr14	14703959	14704159	+	1	NA	NA	NA	1034	NM_001033270	218756	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.020000	0.358209	33(TACTTTAAAAGT,-,0.00)
mm_26146.1	chr3	138066537	138066737	+	1	NA	NA	NA	751	NR_037975	329763	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA	0.030000	0.507463	-38(GGCTATAAATGA,-,0.00)
mm_130115.1	chr15	89476405	89476605	-	1	NA	NA	NA	253	NR_077233	100532730	Mm.461541	NR_077233		C230037L18Rik	-	RIKEN cDNA C230037L18 gene	ncRNA	0.035000	0.522388	
mm_132663.1	chr16	41988360	41988560	+	1	NA	NA	NA	315009	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0.005000	0.333333	
mm_123837.1	chr14	70635766	70635966	-	1	NA	NA	NA	182	NM_001252664	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.065000	0.711443	
mm_136388.1	chr16	93141966	93142166	-	1	NA	NA	NA	211123	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.015000	0.512438	
mm_136449.1	chr16	94995033	94995233	-	1	NA	NA	NA	2563	NM_001025584	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.010000	0.532338	
mm_140558.1	chr17	7927893	7928093	-	1	NA	NA	NA	1993	NM_145968	72536	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik	T cell activation Rho GTPase activating protein	protein-coding	0.025000	0.522388	
mm_50286.1	chr6	47453821	47454021	+	1	NA	NA	NA	-403	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.110000	0.691542	
mm_16055.1	chr2	167775441	167775641	+	1	NA	NA	NA	84364	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.050000	0.577114	
mm_154288.1	chr19	60874438	60874638	-	1	NA	NA	NA	0	NM_007452	11757	Mm.29821	NM_007452	ENSMUSG00000024997	Prdx3	AW822249|Aop1|D0Tohi1|Ef2l|Mer5|Prx3|SP22|TDXM	peroxiredoxin 3	protein-coding	0.075000	0.656716	
mm_2183.1	chr1	88754830	88755030	+	1	NA	NA	NA	40	NR_040493	78650	Mm.243767	NR_040493	ENSMUSG00000097398	Platr5	2410088K16Rik	pluripotency associated transcript 5	ncRNA	0.010000	0.537313	
mm_155041.1	chrX	42149441	42149641	+	1	NA	NA	NA	129	NM_001077712	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.045000	0.557214	
mm_84575.1	chr9	69034361	69034561	-	1	NA	NA	NA	-255380	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.030000	0.507463	
mm_41935.1	chr5	105700808	105701008	+	1	NA	NA	NA	98	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.020000	0.517413	-34(GGCTTGAAAAAG,-,0.00),57(CCCTTTATGTGG,+,0.00)
mm_163722.1	chr13	113614061	113614261	+	1	NA	NA	NA	4403	NM_130796	170625	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.015000	0.477612	
mm_38468.1	chr4	140648659	140648859	-	1	NA	NA	NA	-3	NM_172415	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.140000	0.815920	
mm_5313.1	chr1	22512438	22512638	-	1	NA	NA	NA	-79695	NM_183018	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.045000	0.522388	
mm_127484.1	chr15	101284194	101284394	+	1	NA	NA	NA	-7	NM_026566	68118	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0.135000	0.716418	
mm_123672.1	chr14	69249244	69249444	-	1	NA	NA	NA	35759	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.050000	0.487562	-99(GACTTTAAATGA,-,0.00)
mm_66493.1	chr7	45054107	45054307	-	1	NA	NA	NA	-1326	NM_175022	233210	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	0.050000	0.621891	
mm_31290.1	chr4	45965235	45965435	+	1	NA	NA	NA	0	NM_001290475	100121	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.010000	0.522388	-34(GCCTTTATAAAA,-,0.00),-32(CTTTATAAAAAG,-,0.00)
mm_127949.1	chr15	10720214	10720414	-	1	NA	NA	NA	5414	NR_045065	75259	Mm.33928	NR_045063	ENSMUSG00000097058	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	0.025000	0.517413	
mm_25163.1	chr3	103058259	103058459	+	1	NA	NA	NA	74	NM_010937	18176	Mm.400954	NM_010937	ENSMUSG00000027852	Nras	AV095280|N-ras	neuroblastoma ras oncogene	protein-coding	0.085000	0.666667	
mm_27982.1	chr3	81965048	81965248	-	1	NA	NA	NA	10580	NM_019911	56720	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	0.005000	0.402985	
mm_131706.1	chr16	20732819	20733019	+	1	NA	NA	NA	-208	NM_001278041	12667	Mm.20457	NM_009893	ENSMUSG00000006958	Chrd	Chd	chordin	protein-coding	0.130000	0.761194	
mm_23512.1	chr3	60531143	60531343	+	1	NA	NA	NA	30064	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.363184	
mm_69625.1	chr7	137314274	137314474	-	1	NA	NA	NA	71	NM_001113415	13593	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.135000	0.726368	
mm_50572.1	chr6	49051272	49051472	+	1	NA	NA	NA	14854	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.010000	0.457711	
mm_111937.1	chr12	108893306	108893506	-	1	NA	NA	NA	-195	NM_011710	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.015000	0.502488	
mm_137115.1	chr17	22429161	22429361	+	1	NA	NA	NA	5059	NM_001331198	74149	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	0.015000	0.358209	
mm_92672.1	chr10	80539018	80539218	-	1	NA	NA	NA	6	NM_026094	67331	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0.080000	0.701493	
mm_28985.1	chr3	101283866	101284066	-	1	NA	NA	NA	3973	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.010000	0.388060	
mm_22639.1	chr3	14863390	14863590	+	1	NA	NA	NA	-48	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.035000	0.552239	-12(CTATATAAAAGA,-,0.00)
mm_50048.1	chr6	41151650	41151850	+	1	NA	NA	NA	-116241	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.542289	
mm_75720.1	chr8	69077132	69077332	-	1	NA	NA	NA	-11504	NM_007509	11966	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0.020000	0.457711	
mm_62036.1	chr7	92180516	92180716	+	1	NA	NA	NA	-54354	NM_001243047	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.045000	0.606965	
mm_94808.1	chr11	23010889	23011089	+	1	NA	NA	NA	-2398	NM_028672	73873	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0.005000	0.477612	
mm_100446.1	chr11	119491539	119491739	+	1	NA	NA	NA	19	NM_177394	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.085000	0.661692	
mm_6570.1	chr1	75191866	75192066	-	1	NA	NA	NA	44	NM_001003917	245860	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	0.040000	0.601990	
mm_137683.1	chr17	28823587	28823787	+	1	NA	NA	NA	22561	NM_001081315	268936	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0.010000	0.517413	
mm_127045.1	chr15	96642417	96642617	+	1	NA	NA	NA	-174	NM_001166456	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.070000	0.656716	
mm_9242.1	chr1	171330199	171330399	-	1	NA	NA	NA	1154	NM_011615	21945	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	0.015000	0.517413	-35(CCCTATTAAAAG,-,0.00)
mm_60345.1	chr7	44357877	44358077	+	1	NA	NA	NA	17053	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.025000	0.482587	
mm_30803.1	chr4	20009287	20009487	+	1	NA	NA	NA	1058	NM_015767	50500	Mm.24375	NM_015767	ENSMUSG00000073988	Ttpa	alpha-TTP	tocopherol (alpha) transfer protein	protein-coding	0.010000	0.378109	
mm_63218.1	chr7	126292381	126292581	+	1	NA	NA	NA	19862	NM_145587	104175	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.080000	0.721393	
mm_22688.1	chr3	17789864	17790064	+	1	NA	NA	NA	43	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.015000	0.487562	
mm_38985.1	chr4	151044528	151044728	-	1	NA	NA	NA	37	NM_011067	18628	Mm.121361	NM_011067	ENSMUSG00000028957	Per3	2810049O06Rik|mPer3	period circadian clock 3	protein-coding	0.150000	0.791045	
mm_18110.1	chr2	44991088	44991288	-	1	NA	NA	NA	31989	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.000000	0.388060	-28(CTGTATTAATGG,-,0.00),44(CTTTATAAATCC,+,0.00)
mm_67849.1	chr7	98656703	98656903	-	1	NA	NA	NA	-234	NM_172280	233545	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0.060000	0.567164	
mm_46039.1	chr5	91962763	91962963	-	1	NA	NA	NA	-19	NR_028429	381650	Mm.159453	NR_028429	ENSMUSG00000102644	Thap6	4930534K21Rik|AI448650	THAP domain containing 6	pseudo	0.075000	0.611940	
mm_170922.1	chr2	37261888	37262088	-	1	NA	NA	NA	-4963	NM_001081010	545417	Mm.379955	NM_001081010		Olfr367-ps	EG545417|MOR128-1|ORL1283|OTTMUSG00000012147|Olfr367	olfactory receptor 367, pseudogene	protein-coding	0.015000	0.502488	-32(CCTTTTATAAGC,+,0.00),-32(CCTTTTATAAGC,-,0.00)
mm_121769.1	chr14	19874250	19874450	-	1	NA	NA	NA	35425	NR_105025	52512	Mm.483998	NR_105025		D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.020000	0.462687	
mm_166057.1	chr4	133035525	133035725	+	1	NA	NA	NA	24119	NM_146155	230793	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.000000	0.517413	
mm_20050.1	chr2	120245033	120245233	-	1	NA	NA	NA	202	NM_177845	329502	Mm.330505	NM_177845	ENSMUSG00000050211	Pla2g4e	2310026J01Rik|C230096D22|Pla2epsilon	phospholipase A2, group IVE	protein-coding	0.085000	0.606965	
mm_152411.1	chr19	10605338	10605538	-	1	NA	NA	NA	-187	NM_015735	13194	Mm.289915	NM_015735	ENSMUSG00000024740	Ddb1	127kDa|AA408517|p127-Ddb1	damage specific DNA binding protein 1	protein-coding	0.075000	0.671642	
mm_168050.1	chrY	90811877	90812077	+	1	NA	NA	NA	26535	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.005000	0.472637	
mm_840.1	chr1	51593896	51594096	+	1	NA	NA	NA	-115597	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.015000	0.388060	
mm_60800.1	chr7	45621734	45621934	+	1	NA	NA	NA	23	NM_001018013	73456	Mm.380445	NM_001018013	ENSMUSG00000064158	Izumo1	1700058F15Rik|Izumo	izumo sperm-egg fusion 1	protein-coding	0.020000	0.457711	
mm_144581.1	chr18	31931227	31931427	+	1	NA	NA	NA	-180	NM_144862	225341	Mm.24551	NM_144862	ENSMUSG00000024395	Lims2	PINCH2	LIM and senescent cell antigen like domains 2	protein-coding	0.040000	0.567164	-92(TCCCTTTAAAAG,-,0.00),-91(CCCTTTAAAAGG,+,0.00),-91(CCCTTTAAAAGG,-,0.00),-90(CCTTTAAAAGGA,+,0.00)
mm_120441.1	chr14	65856399	65856599	+	1	NA	NA	NA	19197	NM_145944	67179	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	0.010000	0.492537	
mm_153955.1	chr19	47691863	47692063	-	1	NA	NA	NA	79	NM_007732	12821	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	0.030000	0.452736	
mm_170394.1	chr1	86358010	86358210	-	1	NA	NA	NA	1345	NM_010880	17975	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	0.010000	0.437811	
mm_173236.1	chrX	80875959	80876159	-	1	NA	NA	NA	-194585	NM_138751	192216	Mm.490421	NM_138751	ENSMUSG00000025666	Tmem47	3010015F07Rik|AI115536|BCMP1|Tm4sf10	transmembrane protein 47	protein-coding	0.020000	0.432836	
mm_146015.1	chr18	69382146	69382346	+	1	NA	NA	NA	36525	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.015000	0.402985	
mm_101775.1	chr11	44574697	44574897	-	1	NA	NA	NA	-11520	NR_126460	75389	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	0.005000	0.482587	
mm_144293.1	chr18	12163337	12163537	+	1	NA	NA	NA	-5293	NM_029623	76482	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1	RIKEN cDNA 3110002H16 gene	protein-coding	0.000000	0.283582	
mm_14579.1	chr2	135659538	135659738	+	1	NA	NA	NA	-76418	NR_015544	320684	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.135000	0.711443	
mm_30000.1	chr3	135594281	135594481	-	1	NA	NA	NA	97166	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.025000	0.582090	
mm_19521.1	chr2	94066707	94066907	-	1	NA	NA	NA	-56077	NM_026944	69113	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	protein-coding	0.005000	0.422886	
mm_79036.1	chr9	46173115	46173315	+	1	NA	NA	NA	-55415	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.000000	0.502488	55(TCATTTAGAGTC,+,0.00)
mm_168706.1	chr11	98203265	98203465	+	1	NA	NA	NA	60	NM_001109626	69131	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.060000	0.651741	
mm_26880.1	chr3	17785476	17785676	-	1	NA	NA	NA	-4345	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.010000	0.452736	
mm_145881.1	chr18	65477003	65477203	+	1	NA	NA	NA	46106	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.005000	0.422886	
mm_774.1	chr1	44551391	44551591	+	1	NA	NA	NA	-180	NM_028450	70676	Mm.133132	NM_027506	ENSMUSG00000056870	Gulp1	3110030A04Rik|5730529O06Rik|CED-6|Ced6|GULP|Gulp-2	GULP, engulfment adaptor PTB domain containing 1	protein-coding	0.030000	0.512438	-91(AGGTTTAAAAGG,-,0.00),39(TGCCTTTAAAAG,-,0.00),40(GCCTTTAAAAGC,+,0.00),40(GCCTTTAAAAGC,-,0.00),41(CCTTTAAAAGCA,+,0.00)
mm_123151.1	chr14	57100140	57100340	-	1	NA	NA	NA	4462	NM_008125	14619	Mm.390683	NM_008125	ENSMUSG00000046352	Gjb2	AI325222|Cnx26|Cx26|Gjb-2	gap junction protein, beta 2	protein-coding	0.030000	0.467662	
mm_38271.1	chr4	136882120	136882320	-	1	NA	NA	NA	3957	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.005000	0.597015	
mm_143772.1	chr17	81671565	81671765	-	1	NA	NA	NA	66722	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.015000	0.507463	
mm_102697.1	chr11	65806463	65806663	-	1	NA	NA	NA	-612	NM_001302374	52712	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding	0.040000	0.477612	
mm_34719.1	chr4	152128947	152129147	+	1	NA	NA	NA	-122	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.010000	0.611940	
mm_12820.1	chr2	80316780	80316980	+	1	NA	NA	NA	1414	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.005000	0.507463	
mm_122777.1	chr14	54409919	54410119	-	1	NA	NA	NA	-547	NM_001253680	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.010000	0.522388	
mm_173180.1	chrX	56516071	56516271	-	1	NA	NA	NA	33435	NM_001033372	270599	Mm.424438	NM_001033372	ENSMUSG00000064016	Gm648	-	predicted gene 648	protein-coding	0.005000	0.482587	
mm_37775.1	chr4	129823238	129823438	-	1	NA	NA	NA	2630	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.010000	0.368159	
mm_105308.1	chr11	102818311	102818511	-	1	NA	NA	NA	748	NM_001159382	14615	Mm.390369	NM_008122	ENSMUSG00000034520	Gjc1	C130009G16Rik|Cnx45|Cx45|Gja-7|Gja7	gap junction protein, gamma 1	protein-coding	0.045000	0.427861	
mm_14061.1	chr2	122637795	122637995	+	1	NA	NA	NA	8	NM_001004174	433470	Mm.36783	NM_001004174	ENSMUSG00000033213	AA467197	Nmes1|mir-147	expressed sequence AA467197	protein-coding	0.120000	0.671642	-12(CTGCATATAAGG,-,0.00),-10(GCATATAAGGGC,+,0.00)
mm_33079.1	chr4	123904920	123905120	+	1	NA	NA	NA	7	NM_019660	56309	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	0.125000	0.721393	
mm_170150.1	chr17	45570629	45570829	-	1	NA	NA	NA	2532	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.010000	0.487562	
mm_105482.1	chr11	105939892	105940092	-	1	NA	NA	NA	4155	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.015000	0.601990	
mm_23564.1	chr3	63295331	63295531	+	1	NA	NA	NA	-4	NM_001289462	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.050000	0.611940	
mm_154925.1	chrX	24008383	24008583	+	1	NA	NA	NA	115720	NM_001034864	236749	Mm.296422	NM_001034864	ENSMUSG00000068113	Gm4907	EG236749	predicted gene 4907	protein-coding	0.020000	0.452736	
mm_31385.1	chr4	48039836	48040036	+	1	NA	NA	NA	-5369	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.035000	0.502488	
mm_133029.1	chr16	57239600	57239800	+	1	NA	NA	NA	-8234	NM_026254	67581	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.005000	0.343284	
mm_113555.1	chr13	38151232	38151432	+	1	NA	NA	NA	38	NM_023842	109620	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding	0.100000	0.741294	
mm_45313.1	chr5	65435626	65435826	-	1	NA	NA	NA	116	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.095000	0.676617	
mm_97847.1	chr11	83066434	83066634	+	1	NA	NA	NA	1422	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.010000	0.402985	
mm_85917.1	chr9	111095723	111095923	-	1	NA	NA	NA	-22288	NM_027742	71268	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.010000	0.512438	
mm_15965.1	chr2	166059103	166059303	+	1	NA	NA	NA	66566	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.020000	0.542289	
mm_156606.1	chrX	153140017	153140217	+	1	NA	NA	NA	159	NM_001004154	245670	Mm.190922	NM_001004154	ENSMUSG00000041658	Rragb	-	Ras-related GTP binding B	protein-coding	0.060000	0.587065	
mm_66329.1	chr7	42711388	42711588	-	1	NA	NA	NA	-18770	NM_001008427	434179	Mm.284947	NM_001008427	ENSMUSG00000069727	Zfp975	EG434179|Gm5595|mszf88	zinc finger protein 975	protein-coding	0.000000	0.318408	
mm_111525.1	chr12	100205581	100205781	-	1	NA	NA	NA	5537	NM_001313934	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.030000	0.497512	
mm_45721.1	chr5	86037007	86037207	-	1	NA	NA	NA	28476	NM_001345902	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0.005000	0.353234	
mm_128197.1	chr15	35155592	35155792	-	1	NA	NA	NA	114	NM_019635	56274	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0.120000	0.706468	
mm_22478.1	chr3	5218946	5219146	+	1	NA	NA	NA	492	NM_030708	80892	Mm.41522	NM_030708	ENSMUSG00000025255	Zfhx4	A930021B15|C130041O22Rik|Zfh-4|Zfh4	zinc finger homeodomain 4	protein-coding	0.050000	0.497512	
mm_110741.1	chr12	69791232	69791432	-	1	NA	NA	NA	-625	NM_183294	71091	Mm.132325	NM_183294	ENSMUSG00000020990	Cdkl1	4933411O17Rik	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding	0.060000	0.572139	
mm_2797.1	chr1	130851492	130851692	+	1	NA	NA	NA	-14185	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.010000	0.447761	
mm_82233.1	chr9	3036260	3036460	-	1	NA	NA	NA	2383	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.030000	0.368159	
mm_104850.1	chr11	99318497	99318697	-	1	NA	NA	NA	4344	NM_133730	70810	Mm.268173	NM_133730	ENSMUSG00000035831	Krt25	4631426H08Rik|Ka38|Krt25a|mIRSa1	keratin 25	protein-coding	0.030000	0.467662	-22(CCTTTAAGATTC,+,0.00)
mm_118594.1	chr14	20674428	20674628	+	1	NA	NA	NA	207	NM_001168273	218811	Mm.173119	NM_172596	ENSMUSG00000039367	Sec24c	2610204K03Rik|mKIAA0079	Sec24 related gene family, member C (S. cerevisiae)	protein-coding	0.055000	0.626866	
mm_31628.1	chr4	59262896	59263096	+	1	NA	NA	NA	2945	NR_105031	101055769	Mm.421401	NR_105031		Gm12596	OTTMUSG00000007649	predicted gene 12596	ncRNA	0.020000	0.522388	
mm_4440.1	chr1	172506891	172507091	+	1	NA	NA	NA	6745	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.000000	0.502488	
mm_136498.1	chr16	96372324	96372524	-	1	NA	NA	NA	10660	NM_028078	72058	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.010000	0.472637	-36(GCCTCTATAAGA,-,0.00)
mm_22145.1	chr2	172345577	172345777	-	1	NA	NA	NA	100	NM_025912	67017	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	0.090000	0.726368	
mm_16206.1	chr2	173061651	173061851	+	1	NA	NA	NA	39849	NM_019547	56190	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.010000	0.582090	
mm_149496.1	chr19	11912198	11912398	+	1	NA	NA	NA	-101	NM_172635	225929	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	0.105000	0.671642	
mm_43776.1	chr5	141856602	141856802	+	1	NA	NA	NA	-544795	NM_199068	17425	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf	forkhead box K1	protein-coding	0.005000	0.542289	
mm_43382.1	chr5	135725627	135725827	+	1	NA	NA	NA	10162	NR_106001	102466791		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.025000	0.587065	
mm_140322.1	chr17	86656596	86656796	+	1	NA	NA	NA	-97168	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.005000	0.373134	
mm_155507.1	chrX	73853690	73853890	+	1	NA	NA	NA	27044	NM_008478	16728	Mm.260568	NM_008478	ENSMUSG00000031391	L1cam	CD171|L1|N-CAM-L1|NCAM-L1	L1 cell adhesion molecule	protein-coding	0.000000	0.378109	
mm_151044.1	chr19	47023954	47024154	+	1	NA	NA	NA	-8865	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.030000	0.547264	
mm_143640.1	chr17	79354762	79354962	-	1	NA	NA	NA	229	NM_026514	260409	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	0.090000	0.671642	
mm_149888.1	chr19	25395223	25395423	+	1	NA	NA	NA	-110383	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.020000	0.532338	-29(CCTTTAATGCTG,+,0.00)
mm_9582.1	chr1	174028322	174028522	-	1	NA	NA	NA	3333	NM_172648	226695	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	0.010000	0.318408	
mm_114194.1	chr13	55895720	55895920	+	1	NA	NA	NA	-64395	NM_011097	18740	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.015000	0.522388	
mm_109323.1	chr12	109561904	109562104	+	1	NA	NA	NA	-1688	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.020000	0.378109	
mm_52956.1	chr6	123122594	123122794	+	1	NA	NA	NA	4	NM_001170332	26888	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0.000000	0.437811	
mm_47565.1	chr5	124445284	124445484	-	1	NA	NA	NA	-115	NM_001310723	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.185000	0.800995	
mm_143968.1	chr17	87282679	87282879	-	1	NA	NA	NA	35	NR_015506	74597	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	0.125000	0.741294	
mm_101389.1	chr11	24172681	24172881	-	1	NA	NA	NA	92086	NM_001159290	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.070000	0.557214	
mm_21603.1	chr2	164238194	164238394	-	1	NA	NA	NA	47	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.427861	
mm_148787.1	chr19	6115479	6115679	+	1	NA	NA	NA	3007	NM_133678	66406	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.010000	0.552239	72(AGCTTTTAAAGC,-,0.00),73(GCTTTTAAAGCA,+,0.00)
mm_51023.1	chr6	65106706	65106906	+	1	NA	NA	NA	37924	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.015000	0.353234	
mm_43381.1	chr5	135715889	135716089	+	1	NA	NA	NA	19900	NR_106001	102466791		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.025000	0.502488	22(ATCTTTAAAAAG,-,0.00)
mm_45239.1	chr5	53707414	53707614	-	1	NA	NA	NA	190	NM_009827	12425	Mm.3521	NM_009827	ENSMUSG00000029193	Cckar	AW106902	cholecystokinin A receptor	protein-coding	0.010000	0.562189	
mm_153872.1	chr19	46761156	46761356	-	1	NA	NA	NA	-353	NM_033569	94219	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0.085000	0.661692	
mm_167841.1	chrM	12359	12559	+	1	NA	NA	NA	NA	NA									0.020000	0.427861	-84(CCACTTATAGGC,+,0.00)
mm_22234.1	chr2	174438818	174439018	-	1	NA	NA	NA	121	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.105000	0.686567	
mm_102217.1	chr11	54909572	54909772	-	1	NA	NA	NA	6818	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.025000	0.597015	
mm_124977.1	chr15	20491372	20491572	+	1	NA	NA	NA	175278	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.010000	0.318408	
mm_302.1	chr1	23761697	23761897	+	1	NA	NA	NA	-129	NM_172124	280645	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0.045000	0.666667	
mm_133510.1	chr16	90738287	90738487	+	1	NA	NA	NA	63	NM_029844	77037	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.035000	0.562189	
mm_108357.1	chr12	80692580	80692780	+	1	NA	NA	NA	79	NM_001177503	217682	Mm.154541	NM_001177503	ENSMUSG00000066438	Plekhd1	3830431G21Rik	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1	protein-coding	0.110000	0.721393	
mm_52093.1	chr6	97836421	97836621	+	1	NA	NA	NA	29463	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.025000	0.417910	
mm_164259.1	chr15	100269996	100270196	+	1	NA	NA	NA	-10741	NM_183109	75002	Mm.261400	NM_183109	ENSMUSG00000045631	Tmprss12	4930478A21Rik	transmembrane (C-terminal) protease, serine 12	protein-coding	0.035000	0.537313	
mm_71131.1	chr8	36549324	36549524	+	1	NA	NA	NA	60233	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding	0.045000	0.522388	
mm_100286.1	chr11	117813198	117813398	+	1	NA	NA	NA	3631	NM_009304	20973	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0.020000	0.611940	
mm_154177.1	chr19	58736951	58737151	-	1	NA	NA	NA	8164	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.020000	0.517413	
mm_101223.1	chr11	20200815	20201015	-	1	NA	NA	NA	-687	NM_008996	19324	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0.020000	0.562189	
mm_91438.1	chr10	33924570	33924770	-	1	NA	NA	NA	19559	NM_001162957	212892	Mm.131949	NM_001162957	ENSMUSG00000039552	Rsph4a	A230081C05|Rshl3	radial spoke head 4 homolog A (Chlamydomonas)	protein-coding	0.000000	0.343284	33(CACTATAAAAAC,-,0.00)
mm_41309.1	chr5	90468543	90468743	+	1	NA	NA	NA	7773	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.497512	
mm_30198.1	chr3	144713997	144714197	-	1	NA	NA	NA	6238	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.015000	0.417910	
mm_150416.1	chr19	37207612	37207812	+	1	NA	NA	NA	167	NM_001164336	69104	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	0.145000	0.791045	
mm_81715.1	chr9	111351816	111352016	+	1	NA	NA	NA	40177	NM_001164659	320429	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	0.005000	0.537313	
mm_1163.1	chr1	60909145	60909345	+	1	NA	NA	NA	220	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.010000	0.507463	
mm_156333.1	chrX	139007572	139007772	+	1	NA	NA	NA	77564	NM_177920	331535	Mm.211704	NM_177920	ENSMUSG00000031271	Serpina7	C730040N12Rik|Tbg	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7	protein-coding	0.005000	0.318408	
mm_47475.1	chr5	123720935	123721135	-	1	NA	NA	NA	9	NM_027494	70650	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0.040000	0.611940	
mm_1998.1	chr1	87126866	87127066	+	1	NA	NA	NA	1958	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.040000	0.577114	
mm_87471.1	chr10	51491824	51492024	+	1	NA	NA	NA	1026	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.467662	
mm_24287.1	chr3	89243674	89243874	+	1	NA	NA	NA	1239	NR_121683	360213	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.035000	0.621891	
mm_149654.1	chr19	18670818	18671018	+	1	NA	NA	NA	138	NM_026120	67383	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	0.185000	0.800995	
mm_134018.1	chr16	4880069	4880269	-	1	NA	NA	NA	-318	NM_145359	207740	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.035000	0.492537	
mm_25060.1	chr3	98881151	98881351	+	1	NA	NA	NA	11979	NM_019545	56185	Mm.281874	NM_019545	ENSMUSG00000027870	Hao2	AI325478|Hao-2|Hao3|Haox3	hydroxyacid oxidase 2	protein-coding	0.005000	0.407960	-35(GTCTATATAAAA,-,0.00)
mm_7854.1	chr1	132391686	132391886	-	1	NA	NA	NA	-400	NM_178874	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.160000	0.791045	
mm_80323.1	chr9	74953468	74953668	+	1	NA	NA	NA	515	NM_001113283	235493	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	0.050000	0.597015	
mm_133930.1	chr16	3723232	3723432	-	1	NA	NA	NA	-5208	NM_001161791	54483	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.005000	0.537313	
mm_2174.1	chr1	88406861	88407061	+	1	NA	NA	NA	-49	NM_029269	75396	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	0.010000	0.492537	
mm_165269.1	chr2	75704300	75704500	-	1	NA	NA	NA	263	NR_132727	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.065000	0.666667	
mm_85236.1	chr9	98563500	98563700	-	1	NA	NA	NA	11	NR_029444	75881	Mm.483402	NM_175227	ENSMUSG00000051074	4930579K19Rik	-	RIKEN cDNA 4930579K19 gene	ncRNA	0.080000	0.636816	
mm_49171.1	chr6	14901254	14901454	+	1	NA	NA	NA	5	NM_053242	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.095000	0.592040	
mm_8832.1	chr1	162571338	162571538	-	1	NA	NA	NA	610	NM_001347125	53330	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e	vesicle-associated membrane protein 4	protein-coding	0.060000	0.422886	
mm_96797.1	chr11	69980963	69981163	+	1	NA	NA	NA	-105	NM_026017	67181	Mm.41678	NM_026017	ENSMUSG00000018559	Ctdnep1	2610507E10Rik|Dullard	CTD nuclear envelope phosphatase 1	protein-coding	0.090000	0.761194	
mm_65288.1	chr7	24445499	24445699	-	1	NA	NA	NA	83	NM_199013	210145	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.015000	0.582090	
mm_168475.1	chr11	48951328	48951528	+	1	NA	NA	NA	-5018	NM_001281472	621823	Mm.440151	NM_001281472	ENSMUSG00000078153	Psme2b	PA28b-p|PA28b2|Psme2-like|Psme2b-ps	protease (prosome, macropain) activator subunit 2B	protein-coding	0.050000	0.572139	
mm_55683.1	chr6	72611302	72611502	-	1	NA	NA	NA	5346	NM_009444	22135	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	0.005000	0.393035	
mm_54329.1	chr6	30610838	30611038	-	1	NA	NA	NA	-72	NM_144537	74649	Mm.159276	NM_144537	ENSMUSG00000029788	Cpa5	4930430M09Rik	carboxypeptidase A5	protein-coding	0.030000	0.452736	
mm_22152.1	chr2	172440423	172440623	-	1	NA	NA	NA	-55	NM_025542	66404	Mm.25157	NM_025542	ENSMUSG00000027502	Rtfdc1	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417	replication termination factor 2 domain containing 1	protein-coding	0.110000	0.626866	
mm_84453.1	chr9	66518500	66518700	-	1	NA	NA	NA	-4007	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.010000	0.378109	
mm_41813.1	chr5	103784056	103784256	+	1	NA	NA	NA	29583	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.025000	0.557214	
mm_37408.1	chr4	122793675	122793875	-	1	NA	NA	NA	-42452	NM_008917	19063	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.010000	0.552239	
mm_101920.1	chr11	50200665	50200865	-	1	NA	NA	NA	10055	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.025000	0.517413	
mm_85513.1	chr9	106269343	106269543	-	1	NA	NA	NA	-11618	NM_027354	70235	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	0.015000	0.567164	
mm_89013.1	chr10	81648924	81649124	+	1	NA	NA	NA	-45	NM_001142963	100233208	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	ENSMUSG00000074860	predicted gene 10778	protein-coding	0.040000	0.567164	
mm_63815.1	chr7	133747548	133747748	+	1	NA	NA	NA	12621	NM_001286030	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.035000	0.552239	
mm_18515.1	chr2	62645471	62645671	-	1	NA	NA	NA	684	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.040000	0.532338	
mm_148083.1	chr18	73572195	73572395	-	1	NA	NA	NA	-410	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.125000	0.671642	
mm_166283.1	chr5	96747596	96747796	+	1	NA	NA	NA	-45689	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.010000	0.447761	
mm_136207.1	chr16	89833101	89833301	-	1	NA	NA	NA	-14849	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.020000	0.512438	
mm_115520.1	chr13	5857440	5857640	-	1	NA	NA	NA	552	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.020000	0.572139	
mm_32419.1	chr4	107066896	107067096	+	1	NA	NA	NA	8	NM_175471	230582	Mm.44608	NM_175471	ENSMUSG00000028621	Cyb5rl	2810410C14Rik	cytochrome b5 reductase-like	protein-coding	0.055000	0.562189	
mm_23426.1	chr3	58987033	58987233	+	1	NA	NA	NA	-19845	NM_177855	329650	Mm.240059	NM_177855	ENSMUSG00000056476	Med12l	A130035F20|A630079M02|AU044581|TRALPUSH	mediator complex subunit 12-like	protein-coding	0.025000	0.552239	
mm_97132.1	chr11	75038459	75038659	+	1	NA	NA	NA	27432	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.005000	0.437811	
mm_15052.1	chr2	152876501	152876701	+	1	NA	NA	NA	11534	NR_049195	100885834		NR_049195	ENSMUSG00000093746	Mir5622	Gm24421|mmu-mir-5622	microRNA 5622	ncRNA	0.005000	0.422886	
mm_56599.1	chr6	108688408	108688608	-	1	NA	NA	NA	-27574	NR_104577	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.005000	0.582090	
mm_126261.1	chr15	79108777	79108977	+	1	NA	NA	NA	-106	NM_177461	27008	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	0.130000	0.771144	
mm_104727.1	chr11	98326092	98326292	-	1	NA	NA	NA	3453	NM_010895	18013	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0.055000	0.577114	
mm_166819.1	chr7	18057888	18058088	+	1	NA	NA	NA	-7941	NM_001162524	67315	Mm.46089	NM_026087	ENSMUSG00000030366	Ceacam12	1600031J20Rik|Ceacam12-C1|Ceacam12-C3|Ceacam12C1|Ceacam12C3	carcinoembryonic antigen-related cell adhesion molecule 12	protein-coding	0.020000	0.472637	
mm_41371.1	chr5	90560971	90561171	+	1	NA	NA	NA	-138	NM_001252661	622307	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	0.030000	0.398010	73(CACTAGAAAAGC,-,0.00)
mm_152619.1	chr19	12461642	12461842	-	1	NA	NA	NA	963	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.020000	0.502488	
mm_173219.1	chrX	74305123	74305323	+	1	NA	NA	NA	211	NM_010273	14567	Mm.205830	NM_010273	ENSMUSG00000015291	Gdi1	GDIA|GDIalpha	guanosine diphosphate (GDP) dissociation inhibitor 1	protein-coding	0.055000	0.597015	
mm_35226.1	chr4	19693785	19693985	-	1	NA	NA	NA	15119	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.010000	0.432836	
mm_133939.1	chr16	3907601	3907801	-	1	NA	NA	NA	988	NM_028484	73261	Mm.486226	NM_028484	ENSMUSG00000005983	1700037C18Rik	2810022L20Rik	RIKEN cDNA 1700037C18 gene	protein-coding	0.005000	0.562189	
mm_7759.1	chr1	131138029	131138229	-	1	NA	NA	NA	105	NM_145508	226419	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.140000	0.771144	
mm_73636.1	chr8	110729966	110730166	+	1	NA	NA	NA	4340	NM_001310591	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.025000	0.611940	
mm_145261.1	chr18	52615852	52616052	+	1	NA	NA	NA	37	NM_025749	66758	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	0.025000	0.547264	
mm_100313.1	chr11	117986769	117986969	+	1	NA	NA	NA	12	NM_133757	74451	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.125000	0.731343	
mm_73637.1	chr8	110732028	110732228	+	1	NA	NA	NA	6402	NM_001310591	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.050000	0.656716	
mm_48777.1	chr5	148552013	148552213	-	1	NA	NA	NA	675	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.040000	0.402985	
mm_58308.1	chr6	146212856	146213056	-	1	NA	NA	NA	278809	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.015000	0.472637	
mm_11742.1	chr2	38340974	38341174	+	1	NA	NA	NA	1793	NM_001290646	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.015000	0.472637	-34(CTCCTTTAAAGG,-,0.00),-33(TCCTTTAAAGGA,+,0.00),-33(TCCTTTAAAGGA,-,0.00),-32(CCTTTAAAGGAG,+,0.00),3(GCTTTTAGAAGG,+,0.00)
mm_68524.1	chr7	112140296	112140496	-	1	NA	NA	NA	18661	NM_015814	50781	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148	dickkopf WNT signaling pathway inhibitor 3	protein-coding	0.015000	0.442786	
mm_13686.1	chr2	117120641	117120841	+	1	NA	NA	NA	-330	NM_001277256	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.110000	0.671642	
mm_5426.1	chr1	34473070	34473270	-	1	NA	NA	NA	13424	NM_011206	19253	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.045000	0.592040	
mm_60900.1	chr7	46440720	46440920	+	1	NA	NA	NA	44352	NM_001112739	16502	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.005000	0.522388	
mm_158435.1	chrX	140062218	140062418	-	1	NA	NA	NA	250	NM_001081668	279706	Mm.102590	NM_001081668	ENSMUSG00000072944	Nup62cl	Gm719	nucleoporin 62 C-terminal like	protein-coding	0.080000	0.621891	
mm_116510.1	chr13	45650738	45650938	-	1	NA	NA	NA	143394	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.015000	0.393035	
mm_79048.1	chr9	46228837	46229037	+	1	NA	NA	NA	307	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.010000	0.562189	
mm_3429.1	chr1	150100848	150101048	+	1	NA	NA	NA	917	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.363184	
mm_172190.1	chr6	51047407	51047607	+	1	NA	NA	NA	222403	NR_029719	387166		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.000000	0.447761	
mm_84051.1	chr9	58156248	58156448	-	1	NA	NA	NA	2206	NM_001195431	26968	Mm.367887	NM_012043	ENSMUSG00000037206	Islr	AW553146|Meflin	immunoglobulin superfamily containing leucine-rich repeat	protein-coding	0.000000	0.442786	
mm_7621.1	chr1	127205972	127206172	-	1	NA	NA	NA	1086	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.075000	0.651741	
mm_6444.1	chr1	74001411	74001611	-	1	NA	NA	NA	122936	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.030000	0.631841	
mm_82184.1	chr9	123936804	123937004	+	1	NA	NA	NA	31788	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.005000	0.462687	
mm_150389.1	chr19	36404785	36404985	+	1	NA	NA	NA	25818	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.020000	0.517413	
mm_98565.1	chr11	95384572	95384772	+	1	NA	NA	NA	-250	NM_016752	110172	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	Ugalt2	solute carrier family 35, member B1	protein-coding	0.060000	0.507463	
mm_172420.1	chr7	26387049	26387249	+	1	NA	NA	NA	7094	NM_001042612	330490	Mm.212174	NM_194062	ENSMUSG00000040614	Nlrp9c	AA636537|BB062542|Nalp-zeta|Nalp9c	NLR family, pyrin domain containing 9C	protein-coding	0.025000	0.527363	
mm_150186.1	chr19	32665395	32665595	+	1	NA	NA	NA	45490	NM_011864	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.030000	0.532338	
mm_113186.1	chr13	24937091	24937291	+	1	NA	NA	NA	-210	NR_102323	493800	Mm.458692	NR_102323		9330162012Rik	-	cDNA RIKEN 9330162012 gene	ncRNA	0.050000	0.507463	
mm_77957.1	chr9	7593590	7593790	+	1	NA	NA	NA	22294	NM_001310717	234911	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.010000	0.447761	
mm_51605.1	chr6	84019274	84019474	+	1	NA	NA	NA	-12	NM_001310152	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.050000	0.611940	
mm_36490.1	chr4	83233071	83233271	-	1	NA	NA	NA	91018	NM_027238	69863	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.010000	0.477612	
mm_57857.1	chr6	129494315	129494515	-	1	NA	NA	NA	12750	NM_001301094	108078	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	0.005000	0.348259	
mm_92045.1	chr10	62494925	62495125	-	1	NA	NA	NA	-8220	NM_133672	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.030000	0.467662	
mm_112996.1	chr13	21753938	21754138	+	1	NA	NA	NA	-85	NM_178201	319187		NM_178201	ENSMUSG00000095217	Hist1h2bn	-	histone cluster 1, H2bn	protein-coding	0.020000	0.427861	5(TTGTTTAAAAGG,-,0.00)
mm_14741.1	chr2	144368878	144369078	+	1	NA	NA	NA	-5	NM_001164813	100048644	Mm.227925	NM_001164813	ENSMUSG00000098387	Pet117	Gm20571	PET117 homolog	protein-coding	0.160000	0.721393	
mm_84217.1	chr9	61914456	61914656	-	1	NA	NA	NA	-46	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.105000	0.631841	
mm_131265.1	chr16	10834965	10835165	+	1	NA	NA	NA	6	NM_001162932	223970	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.135000	0.736318	
mm_41415.1	chr5	90801556	90801756	+	1	NA	NA	NA	7122	NM_011339	20309	Mm.64326	NM_011339	ENSMUSG00000029375	Cxcl15	Il8|Scyb15|lungkine|weche	chemokine (C-X-C motif) ligand 15	protein-coding	0.010000	0.348259	
mm_21672.1	chr2	164425674	164425874	-	1	NA	NA	NA	17414	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.000000	0.427861	
mm_16853.1	chr2	11634995	11635195	-	1	NA	NA	NA	-7697	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.010000	0.447761	
mm_170494.1	chr19	23120556	23120756	+	1	NA	NA	NA	-20570	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.010000	0.542289	
mm_54565.1	chr6	37604085	37604285	-	1	NA	NA	NA	74012	NM_145364	208665	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0.000000	0.472637	-32(CCCTTTAAAAAT,-,0.00),-31(CCTTTAAAAATC,+,0.00)
mm_52479.1	chr6	114310089	114310289	+	1	NA	NA	NA	27554	NM_178703	232333	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.010000	0.606965	
mm_56137.1	chr6	87731355	87731555	-	1	NA	NA	NA	586	NM_001159697	58229	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.115000	0.691542	
mm_9953.1	chr1	190979191	190979391	-	1	NA	NA	NA	5	NR_027352	226841	Mm.22856	NM_144879	ENSMUSG00000037568	Vash2	B130052G07Rik	vasohibin 2	protein-coding	0.075000	0.577114	
mm_73733.1	chr8	113642404	113642604	+	1	NA	NA	NA	-709	NM_029139	668110	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	0.000000	0.547264	
mm_59514.1	chr7	27591438	27591638	+	1	NA	NA	NA	-14	NM_001110208	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.050000	0.532338	-66(GGCTCTTAAAAA,-,0.00)
mm_172118.1	chr6	3200981	3201181	+	1	NA	NA	NA	-87438	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.060000	0.532338	
mm_164801.1	chr18	23891095	23891295	+	1	NA	NA	NA	-63493	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.010000	0.512438	
mm_127171.1	chr15	98830759	98830959	+	1	NA	NA	NA	649	NM_016781	19082	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.070000	0.537313	
mm_122118.1	chr14	31014129	31014329	-	1	NA	NA	NA	122	NR_028531	100217431		NR_028531		Snord69	MBII-210	small nucleolar RNA, C/D box 69	snoRNA	0.005000	0.432836	-7(TTTTTTAAGGAG,+,0.00)
mm_146818.1	chr18	21001437	21001637	-	1	NA	NA	NA	237	NM_001303005	56515	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	0.125000	0.746269	
mm_127004.1	chr15	95790890	95791090	+	1	NA	NA	NA	147	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.080000	0.661692	
mm_144428.1	chr18	21001672	21001872	+	1	NA	NA	NA	-185	NM_001303011	56515	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	0.115000	0.706468	
mm_39416.1	chr5	15934490	15934690	+	1	NA	NA	NA	-101	NM_001110843	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.135000	0.830846	
mm_2447.1	chr1	99790102	99790302	+	1	NA	NA	NA	17437	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0.000000	0.318408	
mm_160232.1	chr7	102702288	102702488	+	1	NA	NA	NA	65	NM_147093	259097	Mm.121813	NM_147093	ENSMUSG00000070423	Olfr558	MOR18-1|POGR	olfactory receptor 558	protein-coding	0.000000	0.537313	
mm_92009.1	chr10	62340044	62340244	-	1	NA	NA	NA	277	NM_001146100	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.060000	0.651741	
mm_134407.1	chr16	17663359	17663559	-	1	NA	NA	NA	16989	NM_001166164	72315	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.030000	0.552239	
mm_94996.1	chr11	31871716	31871916	+	1	NA	NA	NA	876	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.010000	0.253731	
mm_76250.1	chr8	83683257	83683457	-	1	NA	NA	NA	10704	NM_001199593	320795	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	0.015000	0.517413	
mm_89070.1	chr10	82985263	82985463	+	1	NA	NA	NA	-134	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.120000	0.696517	
mm_21080.1	chr2	152933077	152933277	-	1	NA	NA	NA	31	NM_010226	14239	Mm.205798	NM_010226	ENSMUSG00000074676	Foxs1	FREAC10|Fkh3|Fkhl18	forkhead box S1	protein-coding	0.025000	0.597015	-69(GCCTTTCTAGGC,+,0.00)
mm_143114.1	chr17	57206135	57206335	-	1	NA	NA	NA	10993	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.030000	0.552239	
mm_135027.1	chr16	32794582	32794782	-	1	NA	NA	NA	2753	NM_146071	224116	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	0.005000	0.452736	
mm_89252.1	chr10	87859108	87859308	+	1	NA	NA	NA	156	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.010000	0.398010	
mm_96308.1	chr11	63158479	63158679	+	1	NA	NA	NA	25776	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.015000	0.358209	
mm_45052.1	chr5	41764455	41764655	-	1	NA	NA	NA	-335	NM_007524	12020	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0.040000	0.592040	
mm_138386.1	chr17	35050026	35050226	+	1	NA	NA	NA	-117	NM_033444	114584	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.050000	0.631841	
mm_84287.1	chr9	62987828	62988028	-	1	NA	NA	NA	-7049	NM_019663	56469	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.010000	0.437811	
mm_78499.1	chr9	32732089	32732289	+	1	NA	NA	NA	36147	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.035000	0.507463	
mm_41647.1	chr5	98186512	98186712	+	1	NA	NA	NA	5743	NM_029947	77630	Mm.332511	NM_029947	ENSMUSG00000035456	Prdm8	4930565F05Rik|PFM5	PR domain containing 8	protein-coding	0.060000	0.567164	
mm_33299.1	chr4	128993213	128993413	+	1	NA	NA	NA	89	NM_001033966	11637	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.085000	0.641791	
mm_164969.1	chr19	7297488	7297688	-	1	NA	NA	NA	-2141	NM_001080390	13728	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.005000	0.437811	
mm_33016.1	chr4	120969167	120969367	+	1	NA	NA	NA	4055	NR_105982	102465614		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.010000	0.527363	
mm_2082.1	chr1	87676102	87676302	+	1	NA	NA	NA	55890	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.015000	0.542289	
mm_6746.1	chr1	83278712	83278912	-	1	NA	NA	NA	119050	NM_027725	71227	Mm.256482	NM_027725	ENSMUSG00000053161	Daw1	4930563E19Rik|4933429D11Rik|Wdr69|b2b1116Clo|b2b1584Clo	dynein assembly factor with WDR repeat domains 1	protein-coding	0.020000	0.507463	
mm_156941.1	chrX	169927469	169927669	+	1	NA	NA	NA	47950	NM_001290505	17318	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	0.050000	0.532338	-96(CCTTTACAGGCC,+,0.00)
mm_137268.1	chr17	24698136	24698336	+	1	NA	NA	NA	2002	NM_027988	71893	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	0.020000	0.512438	
mm_65501.1	chr7	25722841	25723041	-	1	NA	NA	NA	-3888	NM_028771	52132	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.010000	0.587065	
mm_156354.1	chrX	139334153	139334353	+	1	NA	NA	NA	570	NM_011635	22037	Mm.1297	NM_011635	ENSMUSG00000051257	Trap1a	Tra-P1A	tumor rejection antigen P1A	protein-coding	0.055000	0.497512	
mm_92349.1	chr10	75860205	75860405	-	1	NA	NA	NA	-55	NM_010798	17319	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor	protein-coding	0.065000	0.606965	
mm_93113.1	chr10	91122764	91122964	-	1	NA	NA	NA	1099	NM_133668	18674	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.025000	0.402985	
mm_73219.1	chr8	98882448	98882648	+	1	NA	NA	NA	-129339	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA	0.005000	0.363184	
mm_168188.1	chr10	62507682	62507882	-	1	NA	NA	NA	-27	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.020000	0.507463	-7(CTTTCTAAAAGG,-,0.00)
mm_66609.1	chr7	45466303	45466503	-	1	NA	NA	NA	495	NM_007527	12028	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.010000	0.597015	
mm_43162.1	chr5	127030714	127030914	+	1	NA	NA	NA	25	NR_040685	71247	Mm.399586	NR_040685	ENSMUSG00000105490	4933438B17Rik	-	RIKEN cDNA 4933438B17 gene	ncRNA	0.015000	0.477612	
mm_44864.1	chr5	34336097	34336297	-	1	NA	NA	NA	-53	NM_011278	19822	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0.100000	0.621891	
mm_140422.1	chr17	87974965	87975165	+	1	NA	NA	NA	15	NM_010830	17688	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.145000	0.726368	
mm_70120.1	chr7	142969164	142969364	-	1	NA	NA	NA	0	NM_008554	17173	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	0.075000	0.641791	
mm_29411.1	chr3	108955550	108955750	-	1	NA	NA	NA	15093	NM_001078646	66715	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0.000000	0.497512	
mm_148605.1	chr19	5308208	5308408	+	1	NA	NA	NA	9977	NM_001024717	545276	Mm.447174	NM_001024717	ENSMUSG00000047658	Gal3st3	-	galactose-3-O-sulfotransferase 3	protein-coding	0.005000	0.477612	
mm_146863.1	chr18	24530124	24530324	-	1	NA	NA	NA	-20	NM_144861	225283	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	0.120000	0.756219	
mm_129726.1	chr15	82016052	82016252	-	1	NA	NA	NA	-12	NM_134095	28075	Mm.474453	NM_134095	ENSMUSG00000022472	Desi1	AI427858|AI850401|D15Wsu75e|DeSI-1|Fam152b|Pppde2	desumoylating isopeptidase 1	protein-coding	0.115000	0.721393	
mm_145226.1	chr18	50083807	50084007	+	1	NA	NA	NA	30625	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.020000	0.348259	
mm_119998.1	chr14	55617904	55618104	+	1	NA	NA	NA	-162	NM_020002	56739	Mm.23149	NM_020002	ENSMUSG00000002324	Rec8	Rec8L1|mrec	REC8 meiotic recombination protein	protein-coding	0.045000	0.542289	
mm_47529.1	chr5	124187088	124187288	-	1	NA	NA	NA	-6	NM_001289472	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.045000	0.641791	
mm_98596.1	chr11	95824486	95824686	+	1	NA	NA	NA	86	NM_153104	237928	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.100000	0.711443	-33(GCATTTAAAGGG,+,0.00),-33(GCATTTAAAGGG,-,0.00)
mm_76550.1	chr8	88334085	88334285	-	1	NA	NA	NA	28006	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.015000	0.452736	
mm_5789.1	chr1	51895927	51896127	-	1	NA	NA	NA	19951	NM_001290982	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.015000	0.427861	
mm_130897.1	chr15	102398603	102398803	-	1	NA	NA	NA	-7613	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.010000	0.482587	86(GAGTTTAAAAGA,-,0.00)
mm_115586.1	chr13	11826605	11826805	-	1	NA	NA	NA	280240	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.000000	0.407960	
mm_141324.1	chr17	28441598	28441798	-	1	NA	NA	NA	44451	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.015000	0.482587	
mm_140777.1	chr17	17876925	17877125	-	1	NA	NA	NA	6914	NM_013521	14293	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0.015000	0.502488	
mm_121502.1	chr14	121929581	121929781	+	1	NA	NA	NA	-13907	NM_182806	110168	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	0.015000	0.432836	
mm_132817.1	chr16	45223845	45224045	+	1	NA	NA	NA	-392	NM_001037719	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.000000	0.328358	-97(GCCTTTATGGGA,+,0.00),-32(AACTATAAAAAG,-,0.00)
mm_105127.1	chr11	101278848	101279048	-	1	NA	NA	NA	0	NM_026618	52469	Mm.52	NM_026618	ENSMUSG00000017188	Coa3	1810033A19Rik|Ccdc56|D11Ertd99e|HSPC009	cytochrome C oxidase assembly factor 3	protein-coding	0.060000	0.577114	
mm_106566.1	chr11	120633573	120633773	-	1	NA	NA	NA	-126	NM_010756	17134	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.135000	0.691542	
mm_49760.1	chr6	34773937	34774137	+	1	NA	NA	NA	-6395	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.000000	0.273632	
mm_45228.1	chr5	53510489	53510689	-	1	NA	NA	NA	-45190	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.005000	0.527363	
mm_115254.1	chr13	110397881	110398081	+	1	NA	NA	NA	2937	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.020000	0.487562	
mm_165853.1	chr4	11386521	11386721	-	1	NA	NA	NA	157	NM_001347052	207920	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	0.040000	0.621891	
mm_30945.1	chr4	33077276	33077476	+	1	NA	NA	NA	14264	NM_008076	14409	Mm.6227	NM_008076	ENSMUSG00000023267	Gabrr2	-	gamma-aminobutyric acid (GABA) C receptor, subunit rho 2	protein-coding	0.025000	0.547264	
mm_142498.1	chr17	46030884	46031084	-	1	NA	NA	NA	1393	NM_001287058	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.090000	0.726368	
mm_153288.1	chr19	37315044	37315244	-	1	NA	NA	NA	15469	NM_031156	15925	Mm.28366	NM_031156	ENSMUSG00000056999	Ide	1300012G03Rik|4833415K22Rik|AA675336|AI507533	insulin degrading enzyme	protein-coding	0.005000	0.417910	-36(GCCCATATAAAA,-,0.00),-34(CCATATAAAAAC,-,0.00)
mm_75785.1	chr8	70093491	70093691	-	1	NA	NA	NA	8995	NR_106033	102465646		NR_106033	ENSMUSG00000099042	Mir7066	Gm27290|mmu-mir-7066	microRNA 7066	ncRNA	0.025000	0.442786	
mm_11122.1	chr2	28222344	28222544	+	1	NA	NA	NA	16755	NM_019498	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.005000	0.572139	
mm_16959.1	chr2	17411059	17411259	-	1	NA	NA	NA	-152355	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	0.010000	0.368159	
mm_109128.1	chr12	105784619	105784819	+	1	NA	NA	NA	22	NM_001347440	18789	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0.135000	0.681592	
mm_56790.1	chr6	116645068	116645268	-	1	NA	NA	NA	879	NR_106010	102466793		NR_106010	ENSMUSG00000098334	Mir7043	Gm27776|mmu-mir-7043	microRNA 7043	ncRNA	0.035000	0.547264	
mm_162021.1	chr19	46035400	46035600	-	1	NA	NA	NA	4121	NM_010697	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.035000	0.562189	
mm_9489.1	chr1	173729260	173729460	-	1	NA	NA	NA	12449	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.000000	0.492537	
mm_144557.1	chr18	31635006	31635206	+	1	NA	NA	NA	723	NM_172965	269003	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0.095000	0.676617	
mm_143636.1	chr17	78985348	78985548	-	1	NA	NA	NA	23057	NM_001171005	75292	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	0.000000	0.298507	-29(CCTTTTAAATAT,+,0.00)
mm_147763.1	chr18	61375078	61375278	-	1	NA	NA	NA	25253	NM_133249	170826	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0.000000	0.383085	
mm_22731.1	chr3	19689717	19689917	+	1	NA	NA	NA	5579	NM_205769	12918	Mm.290689	NM_205769	ENSMUSG00000049796	Crh	CRF|Gm1347	corticotropin releasing hormone	protein-coding	0.015000	0.383085	
mm_16414.1	chr2	180099743	180099943	+	1	NA	NA	NA	4564	NR_102309	99296	Mm.285360	NM_133849	ENSMUSG00000039059	Hrh3	AW049250|H3R|HH3R	histamine receptor H3	protein-coding	0.040000	0.542289	
mm_38449.1	chr4	140106170	140106370	-	1	NA	NA	NA	-138244	NM_173427	242721	Mm.60400	NM_173427	ENSMUSG00000078234	Klhdc7a	B230308G19Rik	kelch domain containing 7A	protein-coding	0.005000	0.522388	
mm_171111.1	chr3	136443677	136443877	-	1	NA	NA	NA	5572	NR_040592	70055	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	0.015000	0.432836	
mm_125822.1	chr15	74957055	74957255	+	1	NA	NA	NA	2049	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.010000	0.502488	
mm_106537.1	chr11	120578645	120578845	-	1	NA	NA	NA	2875	NM_133796	192662	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.025000	0.592040	
mm_29329.1	chr3	108085279	108085479	-	1	NA	NA	NA	23	NM_001346665	109674	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0.055000	0.651741	87(CCCTTTAAGAAG,-,0.00),88(CCTTTAAGAAGC,+,0.00)
mm_22517.1	chr3	7624532	7624732	+	1	NA	NA	NA	-10872	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.000000	0.338308	
mm_45773.1	chr5	87091915	87092115	-	1	NA	NA	NA	540	NM_001029867	231396	Mm.439851	NM_001029867	ENSMUSG00000070704	Ugt2b36	-	UDP glucuronosyltransferase 2 family, polypeptide B36	protein-coding	0.005000	0.432836	
mm_128801.1	chr15	66935019	66935219	-	1	NA	NA	NA	34522	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.005000	0.482587	
mm_95795.1	chr11	55098017	55098217	+	1	NA	NA	NA	132	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.090000	0.661692	-9(GTCTTTAAAGGC,+,0.00),-9(GTCTTTAAAGGC,-,0.00),-8(TCTTTAAAGGCA,+,0.00)
mm_108768.1	chr12	89642288	89642488	+	1	NA	NA	NA	-170095	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.000000	0.298507	
mm_37154.1	chr4	117121202	117121402	-	1	NA	NA	NA	4423	NR_024078	78611	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0.065000	0.616915	
mm_20318.1	chr2	127315202	127315402	-	1	NA	NA	NA	-20857	NM_010090	13537	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.005000	0.497512	
mm_40571.1	chr5	63784746	63784946	+	1	NA	NA	NA	-27649	NM_029554	76261	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.000000	0.268657	15(CTCTTTATGGCA,+,0.00)
mm_154594.1	chrX	7584350	7584550	+	1	NA	NA	NA	3967	NM_001199348	20371	Mm.182291	NM_054039	ENSMUSG00000039521	Foxp3	JM2|scurfin|sf	forkhead box P3	protein-coding	0.005000	0.407960	
mm_70992.1	chr8	27447573	27447773	+	1	NA	NA	NA	3	NM_027618	70952	Mm.158160	NM_026256	ENSMUSG00000063932	Poteg	4921537P18Rik|4930456F22Rik|Gsarp1|Gsarp2	POTE ankyrin domain family, member G	protein-coding	0.025000	0.512438	
mm_106944.1	chr12	8770951	8771151	+	1	NA	NA	NA	-345	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.070000	0.606965	
mm_26391.1	chr3	142572564	142572764	+	1	NA	NA	NA	12168	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.010000	0.398010	
mm_116950.1	chr13	56135562	56135762	-	1	NA	NA	NA	-112	NM_001159513	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.125000	0.776119	
mm_66786.1	chr7	47008720	47008920	-	1	NA	NA	NA	-406	NM_175318	101685	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.055000	0.537313	-36(GGTTTTTAAAAG,-,0.00),-35(GTTTTTAAAAGA,-,0.00)
mm_109053.1	chr12	104339272	104339472	+	1	NA	NA	NA	886	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.005000	0.497512	
mm_97180.1	chr11	75533309	75533509	+	1	NA	NA	NA	1297	NM_001199283	215113	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.005000	0.542289	
mm_25081.1	chr3	100426345	100426545	+	1	NA	NA	NA	40	NR_040543	73806	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.025000	0.487562	
mm_8010.1	chr1	134803648	134803848	-	1	NA	NA	NA	-27	NR_015606	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.010000	0.512438	
mm_19840.1	chr2	112561601	112561801	-	1	NA	NA	NA	2019	NM_001165935	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.015000	0.502488	
mm_75967.1	chr8	71757491	71757691	-	1	NA	NA	NA	-31910	NM_028715	74015	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.010000	0.388060	
mm_33273.1	chr4	128318893	128319093	+	1	NA	NA	NA	57949	NR_130980	75242	Mm.488254	NR_130980		Hmgb4os	4930546G22Rik	high-mobility group box 4, opposite strand	ncRNA	0.000000	0.457711	
mm_155199.1	chrX	56609754	56609954	+	1	NA	NA	NA	19	NM_172780	236794	Mm.17815	NM_172780	ENSMUSG00000060681	Slc9a6	3732426M05|6430520C02Rik|NHE6|mKIAA0267	solute carrier family 9 (sodium/hydrogen exchanger), member 6	protein-coding	0.115000	0.776119	
mm_2093.1	chr1	87701148	87701348	+	1	NA	NA	NA	-54763	NM_029846	77040	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.010000	0.542289	
mm_6757.1	chr1	84054474	84054674	-	1	NA	NA	NA	164387	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.025000	0.407960	
mm_33212.1	chr4	126556944	126557144	+	1	NA	NA	NA	64	NM_175554	269582	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	0.090000	0.606965	
mm_1046.1	chr1	58795838	58796038	+	1	NA	NA	NA	564	NM_009812	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.045000	0.507463	
mm_76350.1	chr8	84746178	84746378	-	1	NA	NA	NA	28091	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.005000	0.542289	
mm_125440.1	chr15	44619491	44619691	+	1	NA	NA	NA	-50	NM_019480	55960	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0.090000	0.681592	
mm_111398.1	chr12	90738865	90739065	-	1	NA	NA	NA	72	NM_010050	13371	Mm.21389	NM_010050	ENSMUSG00000007682	Dio2	5DII|AI324267|DIOII	deiodinase, iodothyronine, type II	protein-coding	0.020000	0.562189	
mm_11205.1	chr2	29191538	29191738	+	1	NA	NA	NA	56461	NM_001305805	171171	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	0.010000	0.542289	
mm_43790.1	chr5	142692369	142692569	+	1	NA	NA	NA	-9632	NM_146257	243328	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.045000	0.562189	
mm_127092.1	chr15	97784371	97784571	+	1	NA	NA	NA	106	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.110000	0.741294	
mm_145146.1	chr18	45559836	45560036	+	1	NA	NA	NA	-218	NM_080465	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.095000	0.706468	
mm_62284.1	chr7	99859032	99859232	+	1	NA	NA	NA	-86	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.110000	0.651741	
mm_16756.1	chr2	9868779	9868979	-	1	NA	NA	NA	9721	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.040000	0.522388	
mm_26888.1	chr3	18228520	18228720	-	1	NA	NA	NA	14718	NM_007825	13123	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	0.005000	0.373134	
mm_26140.1	chr3	137918766	137918966	+	1	NA	NA	NA	311	NM_019920	56692	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0.040000	0.572139	
mm_3729.1	chr1	155062210	155062410	+	1	NA	NA	NA	37326	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.025000	0.532338	-25(GCATTAAGAGGG,+,0.00)
mm_85052.1	chr9	90114271	90114471	-	1	NA	NA	NA	449	NM_001039147	21761	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.110000	0.691542	
mm_61835.1	chr7	88281342	88281542	+	1	NA	NA	NA	3357	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.025000	0.393035	
mm_13159.1	chr2	92577355	92577555	+	1	NA	NA	NA	-14751	NR_106080	102466819		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	0.010000	0.343284	
mm_52166.1	chr6	98276415	98276615	+	1	NA	NA	NA	66239	NM_001128092	330390	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0.005000	0.542289	
mm_61139.1	chr7	56239706	56239906	+	1	NA	NA	NA	35	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p|p<cas>	oculocutaneous albinism II	protein-coding	0.015000	0.557214	
mm_88190.1	chr10	70026193	70026393	+	1	NA	NA	NA	-70828	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.010000	0.432836	
mm_117637.1	chr13	92451166	92451366	-	1	NA	NA	NA	25297	NM_175455	218440	Mm.213623	NM_175455	ENSMUSG00000045034	Ankrd34b	6430502M16Rik|DP58	ankyrin repeat domain 34B	protein-coding	0.010000	0.452736	
mm_158584.1	chrX	150812853	150813053	-	1	NA	NA	NA	750	NM_001199246	80884	Mm.22575	NM_030700	ENSMUSG00000025268	Maged2	4833439A22Rik|Mage-d2|ORF1	melanoma antigen, family D, 2	protein-coding	0.055000	0.641791	
mm_135289.1	chr16	38522520	38522720	-	1	NA	NA	NA	43	NM_024273	76916	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	0.095000	0.691542	
mm_167242.1	chr8	20550119	20550319	+	1	NA	NA	NA	-64708	NM_001270553	100861668	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.075000	0.656716	
mm_24039.1	chr3	87846649	87846849	+	1	NA	NA	NA	-6	NM_001025571	27371	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	0.015000	0.452736	
mm_111313.1	chr12	85824401	85824601	-	1	NA	NA	NA	44	NM_021446	58520	Mm.143795	NM_021446	ENSMUSG00000021252	0610007P14Rik	1190004E09Rik|AU019315|C77855|ORF11	RIKEN cDNA 0610007P14 gene	protein-coding	0.025000	0.562189	
mm_19745.1	chr2	104816848	104817048	-	1	NA	NA	NA	-252	NM_001123327	99003	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	0.165000	0.820896	
mm_20063.1	chr2	120353019	120353219	-	1	NA	NA	NA	14	NM_178851	269338	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	0.050000	0.616915	
mm_48480.1	chr5	141000568	141000768	-	1	NA	NA	NA	-72	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.005000	0.457711	
mm_49079.1	chr6	6299368	6299568	+	1	NA	NA	NA	50809	NR_136905	101056138	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0.025000	0.477612	35(GTTTTTAGACGG,+,0.00)
mm_136939.1	chr17	14249745	14249945	+	1	NA	NA	NA	-29661	NM_022315	64074	Mm.30162	NM_022315	ENSMUSG00000023886	Smoc2	1700056C05Rik|5430426J21Rik|Smoc2l	SPARC related modular calcium binding 2	protein-coding	0.010000	0.562189	
mm_111689.1	chr12	103457180	103457380	-	1	NA	NA	NA	-57	NM_145449	217845	Mm.298416	NM_145449	ENSMUSG00000021208	Ifi27l2b	1810023F06Rik|ISG12(b2)	interferon, alpha-inducible protein 27 like 2B	protein-coding	0.005000	0.472637	-16(TCATTTAAAGGA,+,0.00)
mm_107238.1	chr12	26478376	26478576	+	1	NA	NA	NA	9261	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.010000	0.477612	
mm_64195.1	chr7	141465016	141465216	+	1	NA	NA	NA	-2246	NM_009842	12476	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0.045000	0.671642	
mm_171304.1	chr3	93943444	93943644	-	1	NA	NA	NA	-1	NM_001163730	668359	Mm.80593	NM_001163730	ENSMUSG00000094328	Gm9125	EG668359	predicted gene 9125	protein-coding	0.010000	0.467662	-35(GCCTATATAAGC,-,0.00)
mm_41986.1	chr5	107688069	107688269	+	1	NA	NA	NA	15311	NR_045871	654809	Mm.399159	NR_045871	ENSMUSG00000106333	4930428O21Rik	-	RIKEN cDNA 4930428O21 gene	ncRNA	0.065000	0.552239	
mm_140840.1	chr17	23670844	23671044	-	1	NA	NA	NA	-2664	NM_181821	353502	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	0.010000	0.592040	
mm_130014.1	chr15	88315532	88315732	-	1	NA	NA	NA	758	NR_045281	328579	Mm.146839	NR_045281		B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	0.005000	0.497512	
mm_3287.1	chr1	136674595	136674795	+	1	NA	NA	NA	-8701	NR_045324	100503460	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.035000	0.512438	
mm_118039.1	chr13	101692513	101692713	-	1	NA	NA	NA	17	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.045000	0.542289	40(CACCTTAAATGG,-,0.00),42(CCTTAAATGGTG,+,0.00)
mm_72342.1	chr8	79546209	79546409	+	1	NA	NA	NA	-93367	NM_001256033	73945	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.010000	0.507463	-30(CCTTTTATAAAT,+,0.00)
mm_47666.1	chr5	126727188	126727388	-	1	NA	NA	NA	-303501	NR_040685	71247	Mm.399586	NR_040685	ENSMUSG00000105490	4933438B17Rik	-	RIKEN cDNA 4933438B17 gene	ncRNA	0.010000	0.432836	
mm_98765.1	chr11	96618405	96618605	+	1	NA	NA	NA	153914	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.005000	0.338308	
mm_64095.1	chr7	140998036	140998236	+	1	NA	NA	NA	12608	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.005000	0.447761	
mm_112346.1	chr12	117151145	117151345	-	1	NA	NA	NA	24	NR_033538	100038689	Mm.445351	NR_033538	ENSMUSG00000099907	Gm10421	ENSMUSG00000072792	predicted gene 10421	ncRNA	0.070000	0.631841	
mm_57295.1	chr6	124450067	124450267	-	1	NA	NA	NA	12577	NM_001346656	232370	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.015000	0.512438	
mm_123925.1	chr14	73365602	73365802	-	1	NA	NA	NA	19569	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.020000	0.378109	
mm_19857.1	chr2	113829496	113829696	-	1	NA	NA	NA	-505	NM_009162	20394	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	0.015000	0.447761	-21(ACTTTTAGGGCC,+,0.00)
mm_2899.1	chr1	131932026	131932226	+	1	NA	NA	NA	21668	NM_001145804	98415	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.005000	0.313433	
mm_80615.1	chr9	88327548	88327748	+	1	NA	NA	NA	39	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	0.080000	0.686567	
mm_61019.1	chr7	49398882	49399082	+	1	NA	NA	NA	152793	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.020000	0.587065	
mm_164975.1	chr19	8724298	8724498	+	1	NA	NA	NA	911	NR_002896	83673	Mm.292489	NR_002896	ENSMUSG00000108414	Snhg1	-	small nucleolar RNA host gene 1	ncRNA	0.005000	0.373134	
mm_154001.1	chr19	52953013	52953213	-	1	NA	NA	NA	29932	NR_030678	100043450	Mm.145594	NR_030678		AA387883	-	expressed sequence AA387883	ncRNA	0.010000	0.457711	
mm_96576.1	chr11	69059680	69059880	+	1	NA	NA	NA	5	NM_028005	71923	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.135000	0.726368	-53(GCCCCTTAAAGG,-,0.00),-52(CCCCTTAAAGGC,+,0.00),-52(CCCCTTAAAGGC,-,0.00),-51(CCCTTAAAGGCG,+,0.00),-50(CCTTAAAGGCGC,+,0.00)
mm_65388.1	chr7	25091688	25091888	-	1	NA	NA	NA	5387	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.015000	0.606965	
mm_96846.1	chr11	70034868	70035068	+	1	NA	NA	NA	16363	NM_007864	13385	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs, large homolog 4 (Drosophila)	protein-coding	0.000000	0.383085	
mm_81875.1	chr9	119133501	119133701	+	1	NA	NA	NA	23492	NM_146230	235674	Mm.379402	NM_146230	ENSMUSG00000010651	Acaa1b	-	acetyl-Coenzyme A acyltransferase 1B	protein-coding	0.010000	0.457711	
mm_122463.1	chr14	45477778	45477978	-	1	NA	NA	NA	52187	NM_146054	218952	Mm.210018	NM_146054	ENSMUSG00000037712	Fermt2	AA960555|Kindlin-2|Mig2|Plekhc1	fermitin family member 2	protein-coding	0.025000	0.502488	
mm_74451.1	chr8	4213991	4214191	-	1	NA	NA	NA	3221	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.050000	0.557214	
mm_62666.1	chr7	108938379	108938579	+	1	NA	NA	NA	4064	NM_025344	66085	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0.025000	0.577114	
mm_26265.1	chr3	142501290	142501490	+	1	NA	NA	NA	4456	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.000000	0.467662	
mm_21657.1	chr2	164404514	164404714	-	1	NA	NA	NA	204	NM_013592	17183	Mm.29428	NM_013592	ENSMUSG00000016995	Matn4	matrilin-4	matrilin 4	protein-coding	0.070000	0.701493	
mm_14118.1	chr2	125893257	125893457	+	1	NA	NA	NA	27134	NM_001291002	69976	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	0.015000	0.393035	70(GCTTTAAGGGAA,+,0.00)
mm_159346.1	chr3	63300015	63300215	+	1	NA	NA	NA	4020	NM_001289463	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.005000	0.318408	
mm_30441.1	chr3	153650144	153650344	-	1	NA	NA	NA	74889	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.005000	0.417910	
mm_22818.1	chr3	27194269	27194469	+	1	NA	NA	NA	11365	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.010000	0.427861	
mm_75669.1	chr8	67818144	67818344	-	1	NA	NA	NA	51	NM_027626	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.035000	0.542289	
mm_62600.1	chr7	105736619	105736819	+	1	NA	NA	NA	-6	NM_010562	16202	Mm.274846	NM_010562	ENSMUSG00000030890	Ilk	AA511515|ESTM24	integrin linked kinase	protein-coding	0.125000	0.766169	
mm_116417.1	chr13	41605438	41605638	-	1	NA	NA	NA	-678	NM_001163572	621976	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.070000	0.631841	
mm_131457.1	chr16	16896477	16896677	+	1	NA	NA	NA	108	NM_176833	68606	Mm.230296	NM_176833	ENSMUSG00000026181	Ppm1f	1110021B16Rik|4933427B07Rik|CaMKPase|Popx2|mKIAA0015	protein phosphatase 1F (PP2C domain containing)	protein-coding	0.070000	0.686567	
mm_122653.1	chr14	51911022	51911222	-	1	NA	NA	NA	2366	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.025000	0.572139	
mm_100376.1	chr11	119267863	119268063	+	1	NA	NA	NA	0	NM_001159324	14387	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.105000	0.661692	
mm_96346.1	chr11	66956446	66956646	+	1	NA	NA	NA	-92	NR_130645	71576	Mm.340077	NR_130315	ENSMUSG00000085683	9130409J20Rik	-	RIKEN cDNA 9130409J20 gene	ncRNA	0.015000	0.562189	
mm_141268.1	chr17	27728847	27729047	-	1	NA	NA	NA	4	NM_013891	30051	Mm.26768	NM_013891	ENSMUSG00000024215	Spdef	PDEF|Pse	SAM pointed domain containing ets transcription factor	protein-coding	0.030000	0.562189	
mm_1812.1	chr1	81187404	81187604	+	1	NA	NA	NA	110187	NM_172849	241134	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	0.005000	0.353234	
mm_20866.1	chr2	148440804	148441004	-	1	NA	NA	NA	2631	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.005000	0.452736	
mm_8475.1	chr1	153415046	153415246	-	1	NA	NA	NA	-913	NR_033736	626058	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0.010000	0.462687	
mm_133546.1	chr16	91269630	91269830	+	1	NA	NA	NA	-39	NM_016968	50914	Mm.39300	NM_016968	ENSMUSG00000046160	Olig1	AI836478|AW494459|Bhlhb6|Olg-1|Oligo1|bHLHe21	oligodendrocyte transcription factor 1	protein-coding	0.095000	0.686567	
mm_121338.1	chr14	115092161	115092361	+	1	NA	NA	NA	46	NM_175500	103978	Mm.320791	NM_175500	ENSMUSG00000022112	Gpc5	A230034F01Rik	glypican 5	protein-coding	0.095000	0.696517	
mm_106647.1	chr11	121054962	121055162	-	1	NA	NA	NA	8507	NM_026907	58210	Mm.116986	NM_026907	ENSMUSG00000039364	Sectm1b	1810003C24Rik|K12|Sectm1	secreted and transmembrane 1B	protein-coding	0.030000	0.487562	
mm_79549.1	chr9	57922474	57922674	+	1	NA	NA	NA	11588	NM_001122873	69459	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0.015000	0.636816	
mm_63039.1	chr7	121083304	121083504	+	1	NA	NA	NA	-34	NM_139310	246190	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0.025000	0.631841	
mm_68485.1	chr7	110982378	110982578	-	1	NA	NA	NA	-17	NM_194464	17540	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0.015000	0.592040	
mm_121249.1	chr14	103057293	103057493	+	1	NA	NA	NA	10381	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.025000	0.452736	
mm_45529.1	chr5	72675186	72675386	-	1	NA	NA	NA	27490	NM_001081205	70701	Mm.38884	NM_001081205	ENSMUSG00000067219	Nipal1	3830408G10Rik|Npal1	NIPA-like domain containing 1	protein-coding	0.010000	0.378109	
mm_37017.1	chr4	113999392	113999592	-	1	NA	NA	NA	11	NM_001167878	242627	Mm.484115	NM_001167876	ENSMUSG00000078598	Skint5	OTTMUSG00000008560|Skint-5	selection and upkeep of intraepithelial T cells 5	protein-coding	0.005000	0.348259	59(GCTTTTAGACTT,+,0.00)
mm_155997.1	chrX	106157005	106157205	+	1	NA	NA	NA	13830	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.010000	0.467662	-11(GCCTTTAGGGGA,+,0.00)
mm_12785.1	chr2	79331935	79332135	+	1	NA	NA	NA	76609	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.010000	0.452736	
mm_126768.1	chr15	86036407	86036607	+	1	NA	NA	NA	-2730	NM_009886	12614	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	0.015000	0.497512	
mm_145831.1	chr18	65439451	65439651	+	1	NA	NA	NA	8554	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.015000	0.373134	
mm_123101.1	chr14	55881974	55882174	-	1	NA	NA	NA	2182	NM_019820	56410	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0.015000	0.492537	50(TCTTTTAAGGTC,+,0.00)
mm_38701.1	chr4	145214954	145215154	-	1	NA	NA	NA	-20049	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.010000	0.582090	
mm_36252.1	chr4	63409899	63410099	-	1	NA	NA	NA	-6554	NM_001045514	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.050000	0.601990	
mm_22813.1	chr3	27188293	27188493	+	1	NA	NA	NA	5389	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.000000	0.422886	
mm_68179.1	chr7	103851771	103851971	-	1	NA	NA	NA	1336	NM_008221	15135	Mm.440164	NM_008221	ENSMUSG00000052187	Hbb-y	Ey|Hby	hemoglobin Y, beta-like embryonic chain	protein-coding	0.015000	0.517413	
mm_98836.1	chr11	97438087	97438287	+	1	NA	NA	NA	-11973	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.010000	0.532338	
mm_102519.1	chr11	60819217	60819417	-	1	NA	NA	NA	-8052	NM_009171	20425	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	0.030000	0.427861	-89(GGGCCTAAAGGC,-,0.00)
mm_79650.1	chr9	59589242	59589442	+	1	NA	NA	NA	28	NM_001311092	76183	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0.025000	0.597015	
mm_144414.1	chr18	20961650	20961850	+	1	NA	NA	NA	17125	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.095000	0.706468	
mm_90358.1	chr10	127165319	127165519	+	1	NA	NA	NA	263	NM_001244617	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.120000	0.716418	
mm_88402.1	chr10	76614953	76615153	+	1	NA	NA	NA	8351	NM_146007	12834	Mm.1949	NM_146007	ENSMUSG00000020241	Col6a2	Col6a-2	collagen, type VI, alpha 2	protein-coding	0.000000	0.557214	
mm_6593.1	chr1	75264585	75264785	-	1	NA	NA	NA	-477	NM_008985	19275	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	0.025000	0.482587	
mm_155226.1	chrX	57066208	57066408	+	1	NA	NA	NA	12474	NM_029371	72459	Mm.2152	NM_028242	ENSMUSG00000067873	Htatsf1	1600023H17Rik|2600017A12Rik|2700077B20Rik|TAT-SF1	HIV TAT specific factor 1	protein-coding	0.000000	0.393035	
mm_49467.1	chr6	29467649	29467849	+	1	NA	NA	NA	-34	NM_025381	66144	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	0.080000	0.611940	
mm_166769.1	chr6	135197887	135198087	+	1	NA	NA	NA	0	NM_028982	74525	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|Kiaa1467|mKIAA1467	family with sequence similarity 234, member B	protein-coding	0.130000	0.726368	
mm_128510.1	chr15	53303304	53303504	-	1	NA	NA	NA	42779	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.005000	0.333333	
mm_36554.1	chr4	86857198	86857398	-	1	NA	NA	NA	69	NM_009096	20104	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	0.105000	0.666667	
mm_25232.1	chr3	103863099	103863299	+	1	NA	NA	NA	2922	NM_008979	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.010000	0.393035	
mm_116910.1	chr13	55483579	55483779	-	1	NA	NA	NA	4397	NM_001177371	56320	Mm.19016	NM_019813	ENSMUSG00000034675	Dbn1	-	drebrin 1	protein-coding	0.060000	0.597015	
mm_132447.1	chr16	35983251	35983451	+	1	NA	NA	NA	-12	NM_008465	16646	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0.155000	0.776119	
mm_160894.1	chr11	72314367	72314567	+	1	NA	NA	NA	23	NM_001099688	628100	Mm.390365	NM_001099688	ENSMUSG00000070388	Fbxo39	1700010H23Rik	F-box protein 39	protein-coding	0.110000	0.721393	
mm_69836.1	chr7	141321936	141322136	-	1	NA	NA	NA	5689	NM_016874	54006	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	deformed epidermal autoregulatory factor 1 (Drosophila)	protein-coding	0.020000	0.532338	
mm_19154.1	chr2	80581183	80581383	-	1	NA	NA	NA	-101	NM_016965	50884	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0.170000	0.805970	
mm_93067.1	chr10	89257551	89257751	-	1	NA	NA	NA	139	NM_001277188	320091	Mm.236464	NM_178773	ENSMUSG00000035189	Ano4	A330096O15Rik|Gm65|Tmem16d	anoctamin 4	protein-coding	0.035000	0.616915	
mm_21949.1	chr2	167062769	167062969	-	1	NA	NA	NA	-65	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.170000	0.850746	
mm_168283.1	chr1	109833908	109834108	+	1	NA	NA	NA	-148892	NM_001316743	241201	Mm.213407	NM_172853	ENSMUSG00000026312	Cdh7	9330156F07Rik|CDH7L1	cadherin 7, type 2	protein-coding	0.010000	0.462687	
mm_108859.1	chr12	98770930	98771130	+	1	NA	NA	NA	8	NM_001160108	75553	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.000000	0.388060	
mm_27008.1	chr3	25868630	25868830	-	1	NA	NA	NA	284577	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.283582	-58(CCTTTTAGACTA,+,0.00)
mm_155216.1	chrX	56791991	56792191	+	1	NA	NA	NA	5564	NM_001287800	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.010000	0.437811	
mm_36109.1	chr4	58844864	58845064	-	1	NA	NA	NA	-59244	NM_146920	258922	Mm.223327	NM_146920	ENSMUSG00000043385	Olfr267	MOR262-1	olfactory receptor 267	protein-coding	0.005000	0.398010	
mm_118764.1	chr14	22438604	22438804	+	1	NA	NA	NA	104094	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.010000	0.492537	
mm_91245.1	chr10	22704184	22704384	-	1	NA	NA	NA	25148	NR_106123	102465768		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	0.010000	0.293532	-73(GACTTTTTAAAG,-,0.00),-71(CTTTTTAAAGCC,+,0.00),45(GCTTTAAAACCG,+,0.00)
mm_59763.1	chr7	28831282	28831482	+	1	NA	NA	NA	-2412	NM_010706	16855	Mm.210336	NM_010706	ENSMUSG00000053964	Lgals4	gal-4	lectin, galactose binding, soluble 4	protein-coding	0.020000	0.631841	
mm_4486.1	chr1	173630912	173631112	+	1	NA	NA	NA	153	NM_175026	236312	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	0.000000	0.442786	
mm_93282.1	chr10	96163323	96163523	-	1	NA	NA	NA	-62784	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.020000	0.442786	
mm_115716.1	chr13	15908695	15908895	-	1	NA	NA	NA	101552	NR_046131	328190	Mm.446957	NR_046131		A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0.000000	0.373134	
mm_106413.1	chr11	119086175	119086375	-	1	NA	NA	NA	-38	NM_007625	12418	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.150000	0.756219	
mm_32590.1	chr4	111719911	111720111	+	1	NA	NA	NA	1	NM_026470	67946	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	0.095000	0.746269	
mm_48111.1	chr5	137112256	137112456	-	1	NA	NA	NA	3851	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.572139	
mm_9887.1	chr1	186633928	186634128	-	1	NA	NA	NA	71961	NM_009367	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.020000	0.487562	
mm_42837.1	chr5	122103057	122103257	+	1	NA	NA	NA	2177	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.050000	0.552239	
mm_91142.1	chr10	19851505	19851705	-	1	NA	NA	NA	-146	NM_029529	76157	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	0.085000	0.626866	
mm_78800.1	chr9	44047390	44047590	+	1	NA	NA	NA	4106	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.015000	0.572139	
mm_77688.1	chr8	126584483	126584683	-	1	NA	NA	NA	8853	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.040000	0.542289	
mm_150970.1	chr19	46500894	46501094	+	1	NA	NA	NA	-654	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.050000	0.492537	
mm_124388.1	chr14	108914147	108914347	-	1	NA	NA	NA	-8	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.020000	0.482587	
mm_169420.1	chr1	45311610	45311810	+	1	NA	NA	NA	172	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.020000	0.497512	
mm_33018.1	chr4	121039518	121039718	+	1	NA	NA	NA	52	NM_007741	12840	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	0.075000	0.676617	
mm_99333.1	chr11	101465389	101465589	+	1	NA	NA	NA	710	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.035000	0.572139	
mm_77490.1	chr8	122574925	122575125	-	1	NA	NA	NA	1882	NM_009698	11821	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	0.015000	0.587065	
mm_16325.1	chr2	174308224	174308424	+	1	NA	NA	NA	10465	NM_001310085	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.010000	0.402985	
mm_156169.1	chrX	130166880	130167080	+	1	NA	NA	NA	417238	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.005000	0.338308	
mm_158620.1	chrX	152657673	152657873	-	1	NA	NA	NA	-13225	NM_001290685	110380	Mm.40796	NM_172441	ENSMUSG00000045180	Shroom2	4832440C16|Apxl|C630003H05Rik|Shrm2	shroom family member 2	protein-coding	0.005000	0.462687	
mm_144559.1	chr18	31759734	31759934	+	1	NA	NA	NA	10	NM_153515	225339	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0.045000	0.532338	
mm_62418.1	chr7	101321007	101321207	+	1	NA	NA	NA	-212	NM_019990	56018	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	0.135000	0.786070	
mm_28483.1	chr3	92457147	92457347	-	1	NA	NA	NA	1473	NM_001204427	20766	Mm.57092	NM_011478	ENSMUSG00000045539	Sprr3	SPR3	small proline-rich protein 3	protein-coding	0.015000	0.492537	
mm_101012.1	chr11	8514366	8514566	-	1	NA	NA	NA	150069	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.010000	0.437811	
mm_89269.1	chr10	87860131	87860331	+	1	NA	NA	NA	-880	NM_001111274	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.045000	0.611940	
mm_141587.1	chr17	32403500	32403700	-	1	NA	NA	NA	-18	NM_001347343	320484	Mm.122284	NM_178785	ENSMUSG00000052142	Rasal3	A430107D22Rik	RAS protein activator like 3	protein-coding	0.030000	0.616915	
mm_132409.1	chr16	35023360	35023560	+	1	NA	NA	NA	1039	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.010000	0.407960	
mm_46555.1	chr5	106691050	106691250	-	1	NA	NA	NA	5680	NM_026856	52397	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.000000	0.383085	
mm_99764.1	chr11	106788622	106788822	+	1	NA	NA	NA	-228	NM_007840	13207	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0.115000	0.651741	
mm_145580.1	chr18	60963761	60963961	+	1	NA	NA	NA	307	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.035000	0.562189	
mm_148283.1	chr18	82527645	82527845	-	1	NA	NA	NA	-26718	NM_001025256	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.010000	0.527363	
mm_121782.1	chr14	19929232	19929432	-	1	NA	NA	NA	47361	NM_001285911	14702	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.000000	0.432836	
mm_72040.1	chr8	70897548	70897748	+	1	NA	NA	NA	-205	NM_029751	76808	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	0.075000	0.517413	
mm_152352.1	chr19	10001472	10001672	-	1	NA	NA	NA	61	NM_011913	24115	Mm.31577	NM_011913	ENSMUSG00000037418	Best1	Bmd|Vmd2|mBest1	bestrophin 1	protein-coding	0.005000	0.522388	
mm_129354.1	chr15	77928607	77928807	-	1	NA	NA	NA	287	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.045000	0.567164	
mm_2230.1	chr1	90998659	90998859	+	1	NA	NA	NA	32	NM_001111312	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.165000	0.791045	
mm_165701.1	chr3	95282972	95283172	-	1	NA	NA	NA	137	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.065000	0.636816	
mm_167597.1	chr9	49798853	49799053	-	1	NA	NA	NA	116	NM_001081445	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding	0.075000	0.606965	
mm_136505.1	chr16	96762706	96762906	-	1	NA	NA	NA	295200	NM_008791	18546	Mm.5023	NM_008791	ENSMUSG00000090223	Pcp4	P16Rimb19|Pcp-4|Pep19	Purkinje cell protein 4	protein-coding	0.005000	0.373134	
mm_90975.1	chr10	13500828	13501028	-	1	NA	NA	NA	-100	NM_001330198	66848	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0.015000	0.492537	
mm_40026.1	chr5	33378457	33378657	+	1	NA	NA	NA	-139	NM_001081101	71101	Mm.132178	NM_001081101	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	0.130000	0.681592	
mm_71258.1	chr8	40917541	40917741	+	1	NA	NA	NA	-8592	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.005000	0.358209	
mm_76024.1	chr8	75096814	75097014	-	1	NA	NA	NA	3296	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.015000	0.547264	
mm_165672.1	chr3	89402489	89402689	-	1	NA	NA	NA	61	NM_020517	57275	Mm.482283	NM_020517	ENSMUSG00000078173	Lenep	AU018355|Lep503	lens epithelial protein	protein-coding	0.020000	0.582090	
mm_39774.1	chr5	30019451	30019651	+	1	NA	NA	NA	6437	NM_031168	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.015000	0.402985	
mm_34882.1	chr4	155582640	155582840	+	1	NA	NA	NA	-18676	NM_177186	320541	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	0.030000	0.651741	
mm_21511.1	chr2	163625336	163625536	-	1	NA	NA	NA	18224	NM_001305803	76080	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.020000	0.492537	
mm_146584.1	chr18	7703557	7703757	-	1	NA	NA	NA	-76794	NM_001161620	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0.000000	0.427861	
mm_4902.1	chr1	189844566	189844766	+	1	NA	NA	NA	77622	NM_026796	226830	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.015000	0.527363	-34(GGCTATATAAGA,-,0.00)
mm_269.1	chr1	20951630	20951830	+	1	NA	NA	NA	104	NM_027974	71877	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	0.065000	0.641791	
mm_13770.1	chr2	118598186	118598386	+	1	NA	NA	NA	75	NM_009773	12236	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	0.080000	0.582090	
mm_47689.1	chr5	129128469	129128669	-	1	NA	NA	NA	31819	NM_001347486	243277	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding	0.060000	0.487562	
mm_23133.1	chr3	38223469	38223669	+	1	NA	NA	NA	-15450	NR_040541	71342	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.025000	0.532338	
mm_14734.1	chr2	144271531	144271731	+	1	NA	NA	NA	727	NM_001289630	74528	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintainance exonuclease 1	protein-coding	0.015000	0.343284	
mm_101607.1	chr11	34839021	34839221	-	1	NA	NA	NA	-5480	NM_027411	70385	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0.010000	0.477612	
mm_139491.1	chr17	56092406	56092606	+	1	NA	NA	NA	12875	NM_001304785	15193	Mm.12966	NM_008233	ENSMUSG00000002833	Hdgfrp2	HRP-2	hepatoma-derived growth factor, related protein 2	protein-coding	0.000000	0.393035	
mm_130072.1	chr15	89355481	89355681	-	1	NA	NA	NA	78	NM_178919	105847	Mm.34511	NM_178919	ENSMUSG00000022614	Lmf2	AI451006|Tmem112b|Tmem153	lipase maturation factor 2	protein-coding	0.075000	0.691542	
mm_60307.1	chr7	44112562	44112762	+	1	NA	NA	NA	-11	NM_010114	13646	Mm.5193	NM_010114	ENSMUSG00000060177	Klk1b22	EGF-BP A|Egfbp-1|Egfbp1|Klk22|mGk-22	kallikrein 1-related peptidase b22	protein-coding	0.005000	0.562189	-34(GGGTTTTTAAAG,-,0.00),-32(GTTTTTAAAGTC,+,0.00)
mm_147705.1	chr18	60811238	60811438	-	1	NA	NA	NA	-738	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.045000	0.582090	
mm_133057.1	chr16	58415503	58415703	+	1	NA	NA	NA	7068	NM_028523	73379	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.000000	0.552239	
mm_65720.1	chr7	28379130	28379330	-	1	NA	NA	NA	-2	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.075000	0.626866	-58(CCCCATAAAAGG,-,0.00)
mm_9972.1	chr1	191189835	191190035	-	1	NA	NA	NA	-6602	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.005000	0.442786	
mm_62326.1	chr7	100472868	100473068	+	1	NA	NA	NA	-23	NM_009464	22229	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.020000	0.582090	
mm_127326.1	chr15	100304715	100304915	+	1	NA	NA	NA	-2	NM_027334	70152	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	0.050000	0.646766	
mm_120077.1	chr14	57524979	57525179	+	1	NA	NA	NA	250	NM_145837	239114	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	0.195000	0.865672	
mm_11538.1	chr2	32633633	32633833	+	1	NA	NA	NA	4233	NM_021515	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.020000	0.621891	
mm_114238.1	chr13	56609547	56609747	+	1	NA	NA	NA	44	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.085000	0.681592	
mm_107093.1	chr12	17544865	17545065	+	1	NA	NA	NA	92	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.160000	0.731343	
mm_1690.1	chr1	75141569	75141769	+	1	NA	NA	NA	699	NM_026977	69171	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0.130000	0.701493	
mm_103536.1	chr11	77489706	77489906	-	1	NA	NA	NA	-128	NM_172945	268445	Mm.39296	NM_172945	ENSMUSG00000037907	Ankrd13b	AW124583|B930093C12Rik	ankyrin repeat domain 13b	protein-coding	0.155000	0.820896	
mm_145468.1	chr18	60293280	60293480	+	1	NA	NA	NA	0	NM_001101475	240328	Mm.329461	NM_001101475	ENSMUSG00000090942	F830016B08Rik	Ifgga4	RIKEN cDNA F830016B08 gene	protein-coding	0.000000	0.492537	
mm_33280.1	chr4	128743343	128743543	+	1	NA	NA	NA	-15815	NM_001009819	215493	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	0.035000	0.577114	
mm_132036.1	chr16	27417126	27417326	+	1	NA	NA	NA	28270	NM_001289436	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.015000	0.447761	
mm_113682.1	chr13	42856674	42856874	+	1	NA	NA	NA	-9473	NM_001302636	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.005000	0.442786	2(GCCTCTATATGC,-,0.00)
mm_61199.1	chr7	63939148	63939348	+	1	NA	NA	NA	-333	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.135000	0.751244	
mm_125805.1	chr15	74922384	74922584	+	1	NA	NA	NA	-32567	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.000000	0.457711	
mm_85635.1	chr9	107651604	107651804	-	1	NA	NA	NA	15695	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.015000	0.606965	
mm_91420.1	chr10	32578240	32578440	-	1	NA	NA	NA	311575	NM_001013411	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding	0.005000	0.323383	
mm_169859.1	chr16	3350315	3350515	+	1	NA	NA	NA	-241983	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.010000	0.432836	
mm_84138.1	chr9	59284084	59284284	-	1	NA	NA	NA	-7388	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.025000	0.482587	
mm_120385.1	chr14	64589805	64590005	+	1	NA	NA	NA	-752	NR_029813	387233		NR_029813	ENSMUSG00000065597	Mir124a-1	Mirn124a|Mirn124a-1	microRNA 124a-1	ncRNA	0.050000	0.626866	
mm_73364.1	chr8	105602725	105602925	+	1	NA	NA	NA	-2404	NM_001081241	75687	Mm.41261	NM_001081241	ENSMUSG00000038604	Fam65a	2310066E14Rik|AI837433	family with sequence similarity 65, member A	protein-coding	0.000000	0.353234	
mm_114991.1	chr13	97559860	97560060	+	1	NA	NA	NA	-40	NR_046157	328314	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.020000	0.477612	
mm_146030.1	chr18	69521272	69521472	+	1	NA	NA	NA	175651	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.020000	0.472637	-32(GCATCTAAAAGA,-,0.00)
mm_120472.1	chr14	65973328	65973528	+	1	NA	NA	NA	4945	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.020000	0.507463	
mm_89945.1	chr10	111282041	111282241	+	1	NA	NA	NA	-16538	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.010000	0.393035	
mm_12695.1	chr2	76406455	76406655	+	1	NA	NA	NA	47	NM_001290733	99031	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding	0.160000	0.820896	
mm_27867.1	chr3	79159424	79159624	-	1	NA	NA	NA	-13649	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.422886	
mm_58141.1	chr6	141946706	141946906	-	1	NA	NA	NA	156	NM_013797	28248	Mm.103665	NM_013797	ENSMUSG00000041698	Slco1a1	A530084B21|OATP-1|Oatp1|Oatp1a1|Slc21a1	solute carrier organic anion transporter family, member 1a1	protein-coding	0.005000	0.368159	
mm_138827.1	chr17	39847902	39848102	+	1	NA	NA	NA	5005	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.080000	0.567164	
mm_109138.1	chr12	106408342	106408542	+	1	NA	NA	NA	39224	NR_036593	76639	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA	0.000000	0.517413	
mm_100981.1	chr11	7210088	7210288	-	1	NA	NA	NA	3735	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding	0.025000	0.512438	
mm_38589.1	chr4	141821715	141821915	-	1	NA	NA	NA	4190	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.020000	0.582090	
mm_11582.1	chr2	32966903	32967103	+	1	NA	NA	NA	3702	NR_002898	104367	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0.075000	0.616915	
mm_144712.1	chr18	35034083	35034283	+	1	NA	NA	NA	-79832	NM_010481	15526	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.020000	0.547264	
mm_160029.1	chr6	131313920	131314120	-	1	NA	NA	NA	-193	NM_172891	243659	Mm.20114	NM_172891	ENSMUSG00000032899	Styk1	9130025L13|AI326477|Nok	serine/threonine/tyrosine kinase 1	protein-coding	0.010000	0.437811	
mm_52874.1	chr6	122342613	122342813	+	1	NA	NA	NA	-2486	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.010000	0.492537	
mm_37869.1	chr4	132351542	132351742	-	1	NA	NA	NA	2044	NR_003270	399101	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0.000000	0.482587	
mm_101092.1	chr11	11881042	11881242	-	1	NA	NA	NA	9266	NM_016672	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.015000	0.512438	
mm_135263.1	chr16	38088588	38088788	-	1	NA	NA	NA	-313	NM_001347232	56637	Mm.394930	NM_019827	ENSMUSG00000022812	Gsk3b	7330414F15Rik|8430431H08Rik|C86142|GSK-3|GSK-3beta|GSK3	glycogen synthase kinase 3 beta	protein-coding	0.100000	0.666667	
mm_133777.1	chr16	94780061	94780261	+	1	NA	NA	NA	76529	NM_001025590	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.005000	0.427861	
mm_120495.1	chr14	65981263	65981463	+	1	NA	NA	NA	12880	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.015000	0.517413	
mm_160742.1	chr10	80671880	80672080	-	1	NA	NA	NA	4313	NM_021462	17347	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.015000	0.577114	
mm_5181.1	chr1	12991031	12991231	-	1	NA	NA	NA	4	NM_172841	240726	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0.060000	0.616915	
mm_171155.1	chr3	20454906	20455106	-	1	NA	NA	NA	-87829	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0.030000	0.572139	
mm_79454.1	chr9	56123197	56123397	+	1	NA	NA	NA	33321	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.015000	0.587065	
mm_23788.1	chr3	79529864	79530064	+	1	NA	NA	NA	37715	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.010000	0.507463	
mm_1841.1	chr1	82840063	82840263	+	1	NA	NA	NA	703	NM_001347077	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.120000	0.776119	
mm_33148.1	chr4	125176431	125176631	+	1	NA	NA	NA	-48650	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.000000	0.432836	22(CCTTAAAGACAG,+,0.00)
mm_59387.1	chr7	26224127	26224327	+	1	NA	NA	NA	-42604	NM_001167540	100312477	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	0.020000	0.582090	
mm_170969.1	chr2	60050571	60050771	-	1	NA	NA	NA	75069	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.020000	0.472637	
mm_159784.1	chr5	106925650	106925850	-	1	NA	NA	NA	140	NM_177873	330149	Mm.121664	NM_177873	ENSMUSG00000043410	Hfm1	A330009G12Rik|Gm1046|Mer3|Sec63d1	HFM1, ATP-dependent DNA helicase homolog	protein-coding	0.055000	0.572139	
mm_54653.1	chr6	39067486	39067686	-	1	NA	NA	NA	0	NR_040523	69986	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.010000	0.532338	
mm_9549.1	chr1	173921951	173922151	-	1	NA	NA	NA	-9005	NM_001033450	381308	Mm.490248	NM_001033450	ENSMUSG00000026536	Ifi211	A730048F03|Ifi205b|Mnda|ifi-205-B	interferon activated gene 211	protein-coding	0.010000	0.412935	
mm_57388.1	chr6	124829373	124829573	-	1	NA	NA	NA	11	NM_001326594	22225	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	0.070000	0.646766	
mm_32397.1	chr4	106840127	106840327	+	1	NA	NA	NA	-35220	NM_001347159	329910	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0.120000	0.776119	
mm_35175.1	chr4	15148867	15149067	-	1	NA	NA	NA	164	NM_178617	69352	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	0.085000	0.671642	
mm_46658.1	chr5	108674712	108674912	-	1	NA	NA	NA	-16	NM_001310691	231583	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0.010000	0.477612	
mm_72626.1	chr8	84657850	84658050	+	1	NA	NA	NA	4902	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.010000	0.537313	-34(TGCTATAAAAGG,-,0.00)
mm_103477.1	chr11	76494563	76494763	-	1	NA	NA	NA	-168	NM_001346670	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.095000	0.691542	
mm_141088.1	chr17	25951968	25952168	-	1	NA	NA	NA	-7137	NM_001039038	621239	Mm.381070	NM_001039038	ENSMUSG00000090113	Nhlrc4	F430201B04Rik	NHL repeat containing 4	protein-coding	0.110000	0.746269	
mm_73073.1	chr8	94449570	94449770	+	1	NA	NA	NA	-14567	NR_015514	320377	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0.000000	0.412935	-52(CCATTTATACAT,+,0.00)
mm_14130.1	chr2	126034680	126034880	+	1	NA	NA	NA	122	NM_008008	14178	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0.015000	0.412935	
mm_156246.1	chrX	136270227	136270427	+	1	NA	NA	NA	74	NM_001110234	12070	Mm.90787	NM_009750	ENSMUSG00000046432	Bex3	AL033356|DXWsu67e|Gcap27|Nade|Ngfrap1	brain expressed X-linked 3	protein-coding	0.115000	0.741294	
mm_167382.1	chr8	94355064	94355264	+	1	NA	NA	NA	25956	NM_001205311	20497	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.010000	0.472637	
mm_120931.1	chr14	76488439	76488639	+	1	NA	NA	NA	103	NM_001177751	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.020000	0.507463	-32(TTTTATAAAAGC,-,0.00)
mm_113394.1	chr13	33083954	33084154	+	1	NA	NA	NA	-49	NM_173052	282663	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	0.005000	0.467662	
mm_109197.1	chr12	108635752	108635952	+	1	NA	NA	NA	99	NM_001163396	14026	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.010000	0.497512	
mm_140144.1	chr17	80061354	80061554	+	1	NA	NA	NA	814	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.120000	0.716418	
mm_55815.1	chr6	83033316	83033516	-	1	NA	NA	NA	55	NM_010070	13448	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.080000	0.676617	
mm_70785.1	chr8	22476791	22476991	+	1	NA	NA	NA	-12	NM_001146117	102032	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	0.150000	0.701493	
mm_71007.1	chr8	31114951	31115151	+	1	NA	NA	NA	3205	NM_175136	68867	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	0.005000	0.487562	
mm_94044.1	chr10	128176501	128176701	-	1	NA	NA	NA	-33	NM_019711	56516	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.020000	0.582090	
mm_107722.1	chr12	56691420	56691620	+	1	NA	NA	NA	-3951	NM_011041	18511	Mm.5035	NM_011041	ENSMUSG00000001497	Pax9	Pax-9	paired box 9	protein-coding	0.070000	0.676617	
mm_97122.1	chr11	74897994	74898194	+	1	NA	NA	NA	14	NM_177325	104662	Mm.220843	NM_177325	ENSMUSG00000038335	Tsr1	AU040765|AW550801|mKIAA1401	TSR1 20S rRNA accumulation	protein-coding	0.100000	0.631841	67(GCTCATAAAGGC,+,0.00)
mm_134389.1	chr16	17346872	17347072	-	1	NA	NA	NA	15601	NM_001331047	15160	Mm.6609	NM_008223	ENSMUSG00000022766	Serpind1	AA985900|AI303446|HC-II|HCII|Hcf2	serine (or cysteine) peptidase inhibitor, clade D, member 1	protein-coding	0.005000	0.512438	
mm_143211.1	chr17	62881325	62881525	-	1	NA	NA	NA	-108	NM_010109	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.125000	0.746269	
mm_158710.1	chrX	162531019	162531219	-	1	NA	NA	NA	112539	NM_001290633	194590	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	0.005000	0.378109	
mm_36013.1	chr4	56865072	56865272	-	1	NA	NA	NA	39	NM_018761	54366	Mm.218891	NM_018761	ENSMUSG00000038816	Ctnnal1	ACRP|AI616177|AW545119|C86009|Catnal1	catenin (cadherin associated protein), alpha-like 1	protein-coding	0.105000	0.736318	
mm_53564.1	chr6	137252246	137252446	+	1	NA	NA	NA	47	NM_011216	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.055000	0.666667	
mm_59601.1	chr7	28139980	28140180	+	1	NA	NA	NA	10614	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.030000	0.527363	
mm_19229.1	chr2	84670635	84670835	-	1	NA	NA	NA	-27	NM_001037279	72657	Mm.259293	NM_001033166	ENSMUSG00000076437	Selenoh	2700094K13Rik|Selh	selenoprotein H	protein-coding	0.055000	0.562189	
mm_165885.1	chr4	42880291	42880491	+	1	NA	NA	NA	-6188	NM_177785	277773	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	0.015000	0.512438	
mm_146121.1	chr18	74442330	74442530	+	1	NA	NA	NA	-189	NM_201600	17919	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	0.160000	0.815920	-32(GGGCTTAAAGGC,-,0.00)
mm_20976.1	chr2	151973365	151973565	-	1	NA	NA	NA	-71	NM_001289151	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.055000	0.582090	
mm_5233.1	chr1	14310131	14310331	-	1	NA	NA	NA	-32	NM_010164	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.020000	0.407960	-28(TTTTTTAAAGCA,+,0.00),25(GCATTTAAACCA,+,0.00)
mm_89415.1	chr10	90829884	90830084	+	1	NA	NA	NA	141	NM_001347053	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.030000	0.442786	
mm_89871.1	chr10	108260738	108260938	+	1	NA	NA	NA	-71351	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.010000	0.363184	-55(CTTTTTAAATGG,+,0.00)
mm_124787.1	chr15	8102918	8103118	+	1	NA	NA	NA	-3809	NM_001081402	545085	Mm.321312	NM_198413	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	0.000000	0.492537	
mm_47207.1	chr5	120941880	120942080	-	1	NA	NA	NA	27162	NM_133893	100535	Mm.247620	NM_133893	ENSMUSG00000032623	Oas1d	AA536864|C85127|oasl8	2'-5' oligoadenylate synthetase 1D	protein-coding	0.000000	0.527363	
mm_153046.1	chr19	32068708	32068908	-	1	NA	NA	NA	34332	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.010000	0.502488	
mm_152223.1	chr19	8663202	8663402	-	1	NA	NA	NA	33	NR_045314	402757	Mm.150255	NR_045314		9830166K06Rik	-	RIKEN cDNA 9830166K06 gene	ncRNA	0.005000	0.537313	
mm_103294.1	chr11	72454357	72454557	-	1	NA	NA	NA	13079	NM_016776	18432	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	0.015000	0.592040	
mm_116310.1	chr13	37049087	37049287	-	1	NA	NA	NA	26	NM_028784	74145	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0.010000	0.542289	
mm_93941.1	chr10	127193047	127193247	-	1	NA	NA	NA	-2102	NR_045715	100038591	Mm.441071	NR_045715	ENSMUSG00000097331	F420014N23Rik	ENSMUSG00000074658	RIKEN cDNA F420014N23 gene	ncRNA	0.025000	0.611940	
mm_173265.1	chrX	94917634	94917834	+	1	NA	NA	NA	108948	NM_178753	270624	Mm.115205	NM_178753	ENSMUSG00000071722	Spin4	9630042H07Rik	spindlin family, member 4	protein-coding	0.010000	0.353234	-70(GTTTTTAAAAAG,-,0.00),23(GTTTTTTAAAGG,-,0.00),24(TTTTTTAAAGGA,+,0.00)
mm_128667.1	chr15	60186929	60187129	-	1	NA	NA	NA	-170411	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.010000	0.298507	
mm_101183.1	chr11	17008567	17008767	-	1	NA	NA	NA	51	NM_019549	56193	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.025000	0.542289	
mm_95625.1	chr11	53583868	53584068	+	1	NA	NA	NA	16599	NM_001290806	16568	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	0.030000	0.492537	
mm_108397.1	chr12	81036082	81036282	+	1	NA	NA	NA	9374	NM_022316	64075	Mm.273295	NM_022316	ENSMUSG00000021136	Smoc1	2600002F22Rik|AI848508|SRG	SPARC related modular calcium binding 1	protein-coding	0.005000	0.398010	
mm_172831.1	chr9	22203718	22203918	-	1	NA	NA	NA	10042	NR_027981	69862	Mm.488068	NM_001033151	ENSMUSG00000090925	1810064F22Rik	-	RIKEN cDNA 1810064F22 gene	ncRNA	0.010000	0.487562	-32(CTTTAAATACCC,+,0.00)
mm_159438.1	chr3	123279065	123279265	+	1	NA	NA	NA	11669	NM_027135	69608	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	0.005000	0.547264	
mm_39667.1	chr5	25247250	25247450	+	1	NA	NA	NA	24457	NM_144908	231050	Mm.21814	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.005000	0.402985	
mm_168178.1	chr10	56497416	56497616	+	1	NA	NA	NA	120216	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.010000	0.407960	
mm_75223.1	chr8	39610372	39610572	-	1	NA	NA	NA	32206	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.477612	
mm_27899.1	chr3	79458411	79458611	-	1	NA	NA	NA	109168	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.000000	0.432836	-68(TACTTTAAAAAC,-,0.00),-46(CTGTTTAAAAGA,-,0.00)
mm_152913.1	chr19	27398989	27399189	-	1	NA	NA	NA	30819	NM_177474	52874	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e|Kiaa0020	pumilio RNA-binding family member 3	protein-coding	0.020000	0.517413	
mm_98623.1	chr11	95858819	95859019	+	1	NA	NA	NA	102	NR_045187	73906	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	0.090000	0.597015	
mm_108003.1	chr12	73548379	73548579	+	1	NA	NA	NA	-4	NR_044985	73644	Mm.369885	NR_044985		2210039B01Rik	-	RIKEN cDNA 2210039B01 gene	ncRNA	0.035000	0.522388	
mm_8147.1	chr1	136415419	136415619	-	1	NA	NA	NA	0	NR_024328	320054	Mm.208000	NR_024328	ENSMUSG00000097403	9230116N13Rik	-	RIKEN cDNA 9230116N13 gene	ncRNA	0.165000	0.776119	
mm_3121.1	chr1	134646606	134646806	+	1	NA	NA	NA	25	NM_009307	20980	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194	synaptotagmin II	protein-coding	0.110000	0.711443	
mm_130305.1	chr15	97019983	97020183	-	1	NA	NA	NA	35873	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.015000	0.393035	
mm_94014.1	chr10	127643566	127643766	-	1	NA	NA	NA	680	NM_009284	20852	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.020000	0.592040	
mm_63785.1	chr7	132129682	132129882	+	1	NA	NA	NA	24959	NM_018867	55987	Mm.471654	NM_018867	ENSMUSG00000030862	Cpxm2	4632435C11Rik|CPX-2|Cpx2	carboxypeptidase X 2 (M14 family)	protein-coding	0.005000	0.492537	
mm_44958.1	chr5	36696614	36696814	-	1	NA	NA	NA	-693	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.015000	0.537313	
mm_110015.1	chr12	16646866	16647066	-	1	NA	NA	NA	-6504	NM_008747	18217	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT2R|NTRL	neurotensin receptor 2	protein-coding	0.025000	0.582090	
mm_86145.1	chr9	117251974	117252174	-	1	NA	NA	NA	409	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.015000	0.462687	
mm_172747.1	chr8	81770659	81770859	+	1	NA	NA	NA	428197	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.015000	0.437811	-78(CTTTTAATAGAA,+,0.00),-61(TCCTAGAAAAGC,-,0.00)
mm_43505.1	chr5	136987351	136987551	+	1	NA	NA	NA	432	NM_011962	26433	Mm.251003	NM_011962	ENSMUSG00000004846	Plod3	AI414586|LH3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	protein-coding	0.090000	0.666667	
mm_81015.1	chr9	104076321	104076521	+	1	NA	NA	NA	12718	NM_175324	102632	Mm.41274	NM_175324	ENSMUSG00000090150	Acad11	5730439E10Rik|AI987948	acyl-Coenzyme A dehydrogenase family, member 11	protein-coding	0.040000	0.482587	
mm_31406.1	chr4	48047287	48047487	+	1	NA	NA	NA	2082	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.070000	0.616915	
mm_154652.1	chrX	7841667	7841867	+	1	NA	NA	NA	-64	NM_001290536	54644	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	0.080000	0.636816	
mm_169720.1	chr15	77895218	77895418	-	1	NA	NA	NA	33676	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.040000	0.487562	
mm_75040.1	chr8	32668332	32668532	-	1	NA	NA	NA	281594	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding	0.005000	0.288557	
mm_124951.1	chr15	12824762	12824962	+	1	NA	NA	NA	47	NM_001130149	14000	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	0.080000	0.626866	
mm_155960.1	chrX	106012028	106012228	+	1	NA	NA	NA	-229	NM_025952	67075	Mm.275943	NM_025952	ENSMUSG00000031232	Magt1	2410001C15Rik|2610529C04Rik|2810482I07Rik|IAG2|IAP	magnesium transporter 1	protein-coding	0.040000	0.378109	
mm_34522.1	chr4	149104060	149104260	+	1	NA	NA	NA	18	NM_001025296	13347	Mm.41433	NM_010044	ENSMUSG00000028974	Dffa	A330085O09Rik|DFF35|Dff45|ICAD|ICAD-L|ICAD-S	DNA fragmentation factor, alpha subunit	protein-coding	0.060000	0.592040	
mm_107103.1	chr12	17748183	17748383	+	1	NA	NA	NA	57469	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.015000	0.402985	
mm_94489.1	chr11	6672595	6672795	+	1	NA	NA	NA	-12459	NR_028586	100041311	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	OTTMUSG00000005125|OTTMUSG00000005127	predicted gene 11978	pseudo	0.010000	0.522388	
mm_23923.1	chr3	83686578	83686778	+	1	NA	NA	NA	-79643	NM_009144	20319	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0.045000	0.522388	
mm_89739.1	chr10	99023347	99023547	+	1	NA	NA	NA	-83724	NM_027740	382406	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.025000	0.472637	
mm_120178.1	chr14	61172993	61173193	+	1	NA	NA	NA	34636	NM_172809	50720	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik|mKIAA0730	sacsin	protein-coding	0.110000	0.736318	
mm_112405.1	chr13	3541712	3541912	+	1	NA	NA	NA	3737	NM_008112	14569	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0.005000	0.318408	
mm_56950.1	chr6	119981369	119981569	-	1	NA	NA	NA	52842	NR_030487	735290		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	0.000000	0.402985	
mm_60702.1	chr7	45215695	45215895	+	1	NA	NA	NA	42	NM_001285498	21677	Mm.3019	NM_011565	ENSMUSG00000030796	Tead2	ETF|Etdf|TEAD-2|TEF-4|TEF4	TEA domain family member 2	protein-coding	0.075000	0.686567	
mm_27258.1	chr3	37419489	37419689	-	1	NA	NA	NA	7	NM_001291044	229228	Mm.436967	NM_153561	ENSMUSG00000050174	Nudt6	Asfgf2b	nudix (nucleoside diphosphate linked moiety X)-type motif 6	protein-coding	0.095000	0.686567	
mm_118249.1	chr13	112001091	112001291	-	1	NA	NA	NA	133255	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.020000	0.517413	
mm_90876.1	chr10	9649625	9649825	-	1	NA	NA	NA	25483	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0.010000	0.467662	
mm_28031.1	chr3	83049022	83049222	-	1	NA	NA	NA	741	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.000000	0.383085	
mm_49426.1	chr6	29271255	29271455	+	1	NA	NA	NA	-1133	NM_001190461	69573	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.015000	0.532338	
mm_77184.1	chr8	111743728	111743928	-	1	NA	NA	NA	21	NM_009954	12927	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0.165000	0.805970	
mm_64307.1	chr7	141862880	141863080	+	1	NA	NA	NA	23908	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.005000	0.562189	
mm_46090.1	chr5	92346945	92347145	-	1	NA	NA	NA	1844	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.020000	0.522388	
mm_154275.1	chr19	60787735	60787935	-	1	NA	NA	NA	2858	NM_010123	13669	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	0.010000	0.333333	
mm_100877.1	chr11	5972359	5972559	-	1	NA	NA	NA	16701	NM_019661	56418	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0.055000	0.606965	
mm_161665.1	chr17	12854939	12855139	-	1	NA	NA	NA	13104	NM_008552	17171	Mm.425994	NM_008552	ENSMUSG00000068037	Mas1	Mas-1|Mgra	MAS1 oncogene	protein-coding	0.020000	0.517413	
mm_99527.1	chr11	103170871	103171071	+	1	NA	NA	NA	-167	NM_001077698	57778	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.135000	0.796020	
mm_53855.1	chr6	149193803	149194003	+	1	NA	NA	NA	-5191	NM_001113424	232566	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0.000000	0.432836	
mm_87791.1	chr10	60299045	60299245	+	1	NA	NA	NA	14684	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.005000	0.527363	
mm_171986.1	chr5	93381950	93382150	-	1	NA	NA	NA	114477	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0.060000	0.631841	
mm_38967.1	chr4	150902010	150902210	-	1	NA	NA	NA	7811	NM_020569	57320	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.030000	0.502488	
mm_100853.1	chr11	5837632	5837832	-	1	NA	NA	NA	284	NM_017401	54125	Mm.260194	NM_017401	ENSMUSG00000020474	Polm	AI462166|B230309I03Rik|Tdt-N	polymerase (DNA directed), mu	protein-coding	0.090000	0.636816	
mm_88262.1	chr10	73822085	73822285	+	1	NA	NA	NA	318	NM_001142735	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0.030000	0.432836	65(AACTTTAAAGGC,-,0.00)
mm_134549.1	chr16	19918191	19918391	-	1	NA	NA	NA	-34017	NR_015488	68162	Mm.35159	NR_015488		A930003A15Rik	AI853191	RIKEN cDNA A930003A15 gene	ncRNA	0.005000	0.427861	
mm_106533.1	chr11	120573560	120573760	-	1	NA	NA	NA	-724	NM_011032	18453	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.085000	0.567164	
mm_12376.1	chr2	69822734	69822934	+	1	NA	NA	NA	464	NM_177784	277396	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	0.150000	0.800995	
mm_144397.1	chr18	20673749	20673949	+	1	NA	NA	NA	8599	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.010000	0.407960	-40(TGCTCTATAAAC,-,0.00)
mm_75058.1	chr8	33660512	33660712	-	1	NA	NA	NA	7374	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.015000	0.527363	
mm_70135.1	chr7	143242616	143242816	-	1	NA	NA	NA	53831	NR_001461	63830	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.000000	0.308458	
mm_86072.1	chr9	114778698	114778898	-	1	NA	NA	NA	3195	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.000000	0.472637	
mm_43432.1	chr5	136083876	136084076	+	1	NA	NA	NA	60	NM_001039103	54153	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.060000	0.676617	
mm_36702.1	chr4	96786636	96786836	-	1	NA	NA	NA	-1576	NM_001081284	620779	Mm.439625	NM_001081284	ENSMUSG00000078639	Gm12695	OTTMUSG00000008003	predicted gene 12695	protein-coding	0.025000	0.577114	-30(CTTTTTAGACTG,+,0.00)
mm_60239.1	chr7	43713112	43713312	+	1	NA	NA	NA	645	NM_001039042	626834	Mm.389891	NM_001039042	ENSMUSG00000054046	Klk13	Egfbp-2|mGk-13	kallikrein related-peptidase 13	protein-coding	0.020000	0.616915	
mm_51983.1	chr6	91983269	91983469	+	1	NA	NA	NA	4404	NM_172731	232237	Mm.295740	NM_172731	ENSMUSG00000034037	Fgd5	C330025N11Rik|ZFYVE23|mFLJ00274	FYVE, RhoGEF and PH domain containing 5	protein-coding	0.015000	0.507463	
mm_62212.1	chr7	97911019	97911219	+	1	NA	NA	NA	-8839	NM_177696	233537	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	0.005000	0.472637	
mm_137847.1	chr17	31057673	31057873	+	1	NA	NA	NA	79	NM_009593	11307	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding	0.125000	0.731343	
mm_13805.1	chr2	119047019	119047219	+	1	NA	NA	NA	0	NM_029617	76464	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	0.075000	0.592040	
mm_109423.1	chr12	110516111	110516311	+	1	NA	NA	NA	30472	NM_012023	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.000000	0.298507	
mm_5224.1	chr1	14304550	14304750	-	1	NA	NA	NA	5549	NM_001310459	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.015000	0.512438	16(CCACTTAAAGAC,+,0.00)
mm_103682.1	chr11	79287478	79287678	-	1	NA	NA	NA	-32883	NM_019653	78889	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.010000	0.492537	
mm_6791.1	chr1	84144416	84144616	-	1	NA	NA	NA	74445	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.308458	-66(TTTTTAAAAGAC,+,0.00),21(GCATATATATGG,-,0.00)
mm_96089.1	chr11	60353266	60353466	+	1	NA	NA	NA	-14	NM_029044	74665	Mm.133570	NM_029044	ENSMUSG00000056598	Lrrc48	4930449E07Rik|Drc3	leucine rich repeat containing 48	protein-coding	0.030000	0.452736	
mm_152233.1	chr19	8709162	8709362	-	1	NA	NA	NA	4635	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.010000	0.512438	
mm_88563.1	chr10	79664459	79664659	+	1	NA	NA	NA	-15	NM_013591	17123	Mm.391556	NM_013591	ENSMUSG00000020310	Madcam1	AV211525	mucosal vascular addressin cell adhesion molecule 1	protein-coding	0.025000	0.631841	
mm_88947.1	chr10	81340759	81340959	+	1	NA	NA	NA	2407	NM_148951	209047	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0.005000	0.552239	
mm_161258.1	chr13	115090773	115090973	-	1	NA	NA	NA	-715	NM_134058	105083	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota homolog (Drosophila)	protein-coding	0.030000	0.487562	
mm_154969.1	chrX	37130916	37131116	+	1	NA	NA	NA	4253	NM_025937	67050	Mm.55422	NM_025937	ENSMUSG00000016409	Nkap	2610020O08Rik|AA987160|AI849147|AL024236	NFKB activating protein	protein-coding	0.000000	0.323383	49(GTGTTTAAAAAA,-,0.00)
mm_42234.1	chr5	113550908	113551108	+	1	NA	NA	NA	588	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.065000	0.631841	
mm_149596.1	chr19	16226859	16227059	+	1	NA	NA	NA	62861	NR_033228	595139	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0.010000	0.537313	
mm_156397.1	chrX	139808181	139808381	+	1	NA	NA	NA	7473	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.015000	0.547264	
mm_53137.1	chr6	125215482	125215682	+	1	NA	NA	NA	1	NM_001080557	22317	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	0.075000	0.577114	
mm_104219.1	chr11	88366878	88367078	-	1	NA	NA	NA	14205	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	0.030000	0.547264	
mm_83755.1	chr9	51328811	51329011	-	1	NA	NA	NA	6	NM_027217	69809	Mm.75315	NM_027217	ENSMUSG00000036027	1810046K07Rik	-	RIKEN cDNA 1810046K07 gene	protein-coding	0.005000	0.497512	
mm_115866.1	chr13	21468368	21468568	-	1	NA	NA	NA	33	NM_025719	66707	Mm.116869	NM_025719	ENSMUSG00000059395	Nkapl	4921504I05Rik	NFKB activating protein-like	protein-coding	0.095000	0.606965	
mm_131448.1	chr16	16303450	16303650	+	1	NA	NA	NA	585	NM_198246	70120	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	0.070000	0.656716	
mm_89193.1	chr10	86347444	86347644	+	1	NA	NA	NA	47132	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.005000	0.378109	
mm_17403.1	chr2	27225101	27225301	-	1	NA	NA	NA	22102	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.010000	0.512438	
mm_145510.1	chr18	60392001	60392201	+	1	NA	NA	NA	16072	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.010000	0.412935	
mm_89841.1	chr10	106879292	106879492	+	1	NA	NA	NA	244272	NM_001142804	380660	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding	0.010000	0.388060	
mm_81939.1	chr9	120384754	120384954	+	1	NA	NA	NA	80781	NM_144557	245049	Mm.100936	NM_144557	ENSMUSG00000041794	Myrip	A230081N12Rik|Slac2-c|Slac2c	myosin VIIA and Rab interacting protein	protein-coding	0.000000	0.442786	
mm_115386.1	chr13	113209665	113209865	+	1	NA	NA	NA	106	NM_023612	71690	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.040000	0.562189	
mm_25714.1	chr3	122724918	122725118	+	1	NA	NA	NA	-4140	NM_153422	242202	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	0.015000	0.447761	
mm_164211.1	chr15	82338770	82338970	-	1	NA	NA	NA	-44	NM_008669	17939	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	0.100000	0.641791	
mm_94111.1	chr10	128626332	128626532	-	1	NA	NA	NA	74	NM_013765	27370	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0.080000	0.592040	
mm_57279.1	chr6	124321543	124321743	-	1	NA	NA	NA	16992	NM_053094	93671	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.025000	0.577114	6(CGCTCTTAAAGT,-,0.00),7(GCTCTTAAAGTG,+,0.00)
mm_36227.1	chr4	62524958	62525158	-	1	NA	NA	NA	-44	NM_021498	59001	Mm.27444	NM_021498	ENSMUSG00000028394	Pole3	1810034K18Rik|YBL1	polymerase (DNA directed), epsilon 3 (p17 subunit)	protein-coding	0.060000	0.621891	
mm_87477.1	chr10	51492750	51492950	+	1	NA	NA	NA	1952	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.402985	
mm_162911.1	chr10	118156498	118156698	+	1	NA	NA	NA	14811	NM_010785	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.020000	0.492537	
mm_172795.1	chr9	110946020	110946220	-	1	NA	NA	NA	38	NM_011562	21667	Mm.5090	NM_011562	ENSMUSG00000032494	Tdgf1	CR1|cripto	teratocarcinoma-derived growth factor 1	protein-coding	0.045000	0.562189	-9(TTCTTTTAAGGG,-,0.00),-8(TCTTTTAAGGGA,+,0.00),-7(CTTTTAAGGGAG,+,0.00)
mm_110094.1	chr12	25188998	25189198	-	1	NA	NA	NA	59924	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.015000	0.512438	-34(GGGCTTATAAGC,-,0.00),-32(GCTTATAAGCAG,+,0.00)
mm_12932.1	chr2	85050370	85050570	+	1	NA	NA	NA	10	NM_001081260	228140	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	0.035000	0.631841	
mm_83518.1	chr9	46175384	46175584	-	1	NA	NA	NA	-53146	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.005000	0.507463	
mm_40839.1	chr5	73256862	73257062	+	1	NA	NA	NA	-344	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.025000	0.467662	
mm_40421.1	chr5	53420973	53421173	+	1	NA	NA	NA	-134706	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.000000	0.427861	
mm_151024.1	chr19	46961714	46961914	+	1	NA	NA	NA	537	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.055000	0.616915	
mm_34187.1	chr4	140701416	140701616	+	1	NA	NA	NA	43	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.110000	0.631841	
mm_140157.1	chr17	80183922	80184122	+	1	NA	NA	NA	23283	NM_001195486	225027	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0.040000	0.527363	80(TGCTTTAAAAGT,-,0.00),81(GCTTTAAAAGTA,+,0.00)
mm_30884.1	chr4	32249192	32249392	+	1	NA	NA	NA	-168143	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.025000	0.417910	
mm_30705.1	chr4	11965802	11966002	+	1	NA	NA	NA	79	NM_001290387	381511	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	0.060000	0.671642	
mm_36920.1	chr4	108118441	108118641	-	1	NA	NA	NA	6	NM_011327	20280	Mm.379011	NM_011327	ENSMUSG00000028603	Scp2	AA409774|AA409893|C76618|C79031|NSL-TP|SCP-2|SCP-X|SCPX|ns-LTP	sterol carrier protein 2, liver	protein-coding	0.085000	0.636816	
mm_147279.1	chr18	39486905	39487105	-	1	NA	NA	NA	240	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.020000	0.552239	
mm_153098.1	chr19	32712239	32712439	-	1	NA	NA	NA	-41	NM_026487	67979	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.120000	0.726368	
mm_125983.1	chr15	76337485	76337685	+	1	NA	NA	NA	-5938	NM_025567	66445	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	0.045000	0.512438	
mm_158037.1	chrX	98757420	98757620	-	1	NA	NA	NA	133505	NM_052976	94190	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	0.005000	0.462687	
mm_29997.1	chr3	135589893	135590093	-	1	NA	NA	NA	101554	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.020000	0.512438	
mm_75942.1	chr8	71566537	71566737	-	1	NA	NA	NA	12	NM_145598	234404	Mm.213208	NM_145598	ENSMUSG00000034829	Nxnl1	A930031O08Rik|RdCVF|Txnl6	nucleoredoxin-like 1	protein-coding	0.010000	0.542289	
mm_15846.1	chr2	164771213	164771413	+	1	NA	NA	NA	1384	NM_026785	68612	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	0.020000	0.567164	
mm_108758.1	chr12	89063837	89064037	+	1	NA	NA	NA	110547	NM_172544	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.015000	0.393035	
mm_4543.1	chr1	176996861	176997061	+	1	NA	NA	NA	-160828	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0.055000	0.492537	
mm_118302.1	chr13	113096211	113096411	-	1	NA	NA	NA	4670	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.005000	0.388060	
mm_101972.1	chr11	50313524	50313724	-	1	NA	NA	NA	12049	NM_001110499	12330	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	0.005000	0.348259	-3(GCTTTTATGAGC,+,0.00),52(AGGTATTAAAGG,-,0.00)
mm_26565.1	chr3	146549102	146549302	+	1	NA	NA	NA	-27779	NM_027371	70285	Mm.28128	NM_027332	ENSMUSG00000028187	Rpf1	2210420E24Rik|2310066N05Rik|Bxdc5	ribosome production factor 1 homolog	protein-coding	0.015000	0.532338	
mm_102984.1	chr11	69681870	69682070	-	1	NA	NA	NA	0	NM_030702	80886	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0.140000	0.741294	
mm_20662.1	chr2	132118421	132118621	-	1	NA	NA	NA	26587	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.015000	0.422886	-34(CTGTTTTAAAGG,-,0.00)
mm_17685.1	chr2	32314940	32315140	-	1	NA	NA	NA	-3225	NR_128563	104795665		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	0.035000	0.577114	
mm_43953.1	chr5	145208459	145208659	+	1	NA	NA	NA	4000	NM_001167944	22757	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	0.020000	0.592040	
mm_100642.1	chr11	121830141	121830341	+	1	NA	NA	NA	23	NM_029049	74675	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.055000	0.631841	
mm_79273.1	chr9	50754220	50754420	+	1	NA	NA	NA	1349	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.020000	0.512438	
mm_53305.1	chr6	129180860	129181060	+	1	NA	NA	NA	345	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.035000	0.477612	
mm_171636.1	chr4	22699708	22699908	+	1	NA	NA	NA	209260	NR_131335	105500046		NR_131335	ENSMUSG00000107859	Gm30731	Pnky|lnc-pou3f2	predicted gene, 30731	ncRNA	0.020000	0.492537	-25(GGGTATTTAAGG,-,0.00)
mm_14251.1	chr2	128128018	128128218	+	1	NA	NA	NA	543	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.090000	0.636816	
mm_127251.1	chr15	99692124	99692324	+	1	NA	NA	NA	469	NM_001289791	11419	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	0.025000	0.597015	
mm_105647.1	chr11	107132040	107132240	-	1	NA	NA	NA	-218	NM_176850	207165	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0.140000	0.746269	
mm_120228.1	chr14	62858490	62858690	+	1	NA	NA	NA	-6952	NR_105860	102465311		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.005000	0.502488	
mm_8839.1	chr1	162675779	162675979	-	1	NA	NA	NA	-17660	NM_001177581	100038657	Mm.416999	NM_001177581	ENSMUSG00000091060	7420461P10Rik	ENSMUSG00000073516	RIKEN cDNA 7420461P10 gene	protein-coding	0.000000	0.288557	
mm_156741.1	chrX	159942952	159943152	+	1	NA	NA	NA	359	NM_001290664	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.000000	0.477612	
mm_29154.1	chr3	106014503	106014703	-	1	NA	NA	NA	43	NM_001200028	100503311	Mm.386825	NM_029604	ENSMUSG00000010136	Pifo	1700027A23Rik	primary cilia formation	protein-coding	0.005000	0.447761	
mm_43981.1	chr5	146261213	146261413	+	1	NA	NA	NA	29638	NM_153599	264064	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.080000	0.487562	
mm_117944.1	chr13	99434862	99435062	-	1	NA	NA	NA	-22136	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.010000	0.452736	
mm_103369.1	chr11	75190373	75190573	-	1	NA	NA	NA	10	NM_144491	116905	Mm.41496	NM_144491	ENSMUSG00000078789	Dph1	2310011M22Rik|4930488F09Rik|AW551873|Dph2l1|Ovca1	diphthamide biosynthesis 1	protein-coding	0.095000	0.646766	
mm_41078.1	chr5	87674105	87674305	+	1	NA	NA	NA	7997	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.303483	
mm_39987.1	chr5	32487547	32487747	+	1	NA	NA	NA	28677	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.015000	0.407960	
mm_31045.1	chr4	41135557	41135757	+	1	NA	NA	NA	-364	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.150000	0.786070	
mm_22490.1	chr3	5860540	5860740	+	1	NA	NA	NA	-284392	NM_001163305	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.090000	0.631841	
mm_36667.1	chr4	95215079	95215279	-	1	NA	NA	NA	-162957	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.015000	0.437811	
mm_12549.1	chr2	72405243	72405443	+	1	NA	NA	NA	-70876	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.020000	0.358209	
mm_90786.1	chr10	7054822	7055022	-	1	NA	NA	NA	-31737	NM_001033391	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.010000	0.487562	
mm_111382.1	chr12	87388227	87388427	-	1	NA	NA	NA	28	NM_011479	20773	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.115000	0.681592	
mm_71529.1	chr8	46887471	46887671	+	1	NA	NA	NA	-99316	NM_177304	320981	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.010000	0.547264	
mm_30385.1	chr3	152247030	152247230	-	1	NA	NA	NA	19190	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.025000	0.452736	
mm_78221.1	chr9	21546789	21546989	+	1	NA	NA	NA	-5	NM_021531	59035	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0.200000	0.875622	
mm_113229.1	chr13	27240930	27241130	+	1	NA	NA	NA	-1400	NM_008865	18776	Mm.37203	NM_008865	ENSMUSG00000038891	Prl3b1	Csh2|Ghd8|PL|Pl-2|Pl2|mPL-II|mplII	prolactin family 3, subfamily b, member 1	protein-coding	0.000000	0.348259	
mm_69182.1	chr7	127232829	127233029	-	1	NA	NA	NA	201	NR_030674	100043580	Mm.482209	NR_030674	ENSMUSG00000000486	Gm4532	-	predicted gene 4532	ncRNA	0.080000	0.666667	
mm_6577.1	chr1	75216860	75217060	-	1	NA	NA	NA	2334	NM_001313723	22145	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	0.015000	0.512438	
mm_105121.1	chr11	101170231	101170431	-	1	NA	NA	NA	971	NM_146030	217198	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	0.065000	0.646766	
mm_40624.1	chr5	64812243	64812443	+	1	NA	NA	NA	8820	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.035000	0.522388	
mm_57161.1	chr6	122765167	122765367	-	1	NA	NA	NA	-22522	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.030000	0.507463	
mm_122769.1	chr14	54397577	54397777	-	1	NA	NA	NA	11795	NM_001253680	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.015000	0.467662	
mm_101728.1	chr11	42320928	42321128	-	1	NA	NA	NA	44	NM_008068	14399	Mm.4915	NM_008068	ENSMUSG00000020428	Gabra6	GABA-ARalpha6|Gabra-6|alpha6	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	protein-coding	0.015000	0.422886	
mm_73514.1	chr8	107374236	107374436	+	1	NA	NA	NA	28869	NM_008706	18104	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	0.000000	0.343284	
mm_165518.1	chr2	173719352	173719552	+	1	NA	NA	NA	37	NM_029308	75485	Mm.308031	NM_029308	ENSMUSG00000057047	1700010B08Rik	-	RIKEN cDNA 1700010B08 gene	protein-coding	0.010000	0.532338	
mm_35898.1	chr4	49597150	49597350	-	1	NA	NA	NA	620	NM_025944	67063	Mm.490285	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	0.105000	0.731343	
mm_146572.1	chr18	6595377	6595577	-	1	NA	NA	NA	-8156	NM_027598	70901	Mm.158484	NM_027598	ENSMUSG00000039540	4921524L21Rik	-	RIKEN cDNA 4921524L21 gene	protein-coding	0.000000	0.512438	-47(CACTATAAAAGG,-,0.00),-14(CTCTCTTTAAGC,-,0.00)
mm_159002.1	chr1	153891388	153891588	+	1	NA	NA	NA	-158	NM_178244	240819	Mm.453236	NM_178244	ENSMUSG00000047053	Teddm1a	Epdd1|Teddm1|e9-1	transmembrane epididymal protein 1A	protein-coding	0.010000	0.517413	
mm_171452.1	chr4	145510620	145510820	+	1	NA	NA	NA	-39	NM_001324553	101056073	Mm.276881	NM_001324553	ENSMUSG00000078503	LOC101056073	-	zinc finger protein 501-like	protein-coding	0.020000	0.487562	
mm_56083.1	chr6	87335379	87335579	-	1	NA	NA	NA	296	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.115000	0.691542	
mm_171172.1	chr3	32483195	32483395	+	1	NA	NA	NA	8674	NM_001195074	100502876	Mm.383358	NM_001195074	ENSMUSG00000091091	Kcnmb3	EG435726|Gm5707	potassium large conductance calcium-activated channel, subfamily M, beta member 3	protein-coding	0.010000	0.512438	
mm_17433.1	chr2	27507559	27507759	-	1	NA	NA	NA	-7488	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.015000	0.582090	
mm_2554.1	chr1	109983190	109983390	+	1	NA	NA	NA	-12	NM_001316744	241201	Mm.213407	NM_172853	ENSMUSG00000026312	Cdh7	9330156F07Rik|CDH7L1	cadherin 7, type 2	protein-coding	0.040000	0.552239	
mm_57493.1	chr6	125312969	125313169	-	1	NA	NA	NA	801	NM_010736	17000	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|CD18|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	0.030000	0.522388	
mm_53385.1	chr6	129533094	129533294	+	1	NA	NA	NA	2	NM_020590	57436	Mm.14638	NM_020590	ENSMUSG00000030161	Gabarapl1	3110025G09Rik|9130422N19Rik|AI196471|Apg8l|Atg8l|GECI|MNCb-0091	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1	protein-coding	0.055000	0.567164	
mm_28478.1	chr3	92142652	92142852	-	1	NA	NA	NA	2	NM_027042	69332	Mm.120271	NM_027042	ENSMUSG00000027927	Lelp1	1700012F11Rik	late cornified envelope-like proline-rich 1	protein-coding	0.005000	0.487562	
mm_129375.1	chr15	78120074	78120274	-	1	NA	NA	NA	-894	NM_007583	12300	Mm.277338	NM_007583	ENSMUSG00000019146	Cacng2	AW060990|B230105C07Rik|B930041E13Rik|stargazer|stargazin|stg|wag|waggler	calcium channel, voltage-dependent, gamma subunit 2	protein-coding	0.060000	0.671642	
mm_139997.1	chr17	72939528	72939728	+	1	NA	NA	NA	21323	NM_029999	77889	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.025000	0.422886	
mm_126723.1	chr15	85418023	85418223	+	1	NA	NA	NA	81742	NM_016843	54138	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.020000	0.542289	
mm_158404.1	chrX	136837566	136837766	-	1	NA	NA	NA	14920	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.353234	
mm_27761.1	chr3	69599165	69599365	-	1	NA	NA	NA	-305	NM_020026	26879	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0.020000	0.562189	
mm_14798.1	chr2	145878775	145878975	+	1	NA	NA	NA	-24366	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.025000	0.472637	
mm_65226.1	chr7	19713625	19713825	-	1	NA	NA	NA	1704	NM_001109748	53333	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40 homolog (yeast)	protein-coding	0.020000	0.517413	
mm_127995.1	chr15	12674112	12674312	-	1	NA	NA	NA	-81656	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.010000	0.457711	
mm_13672.1	chr2	115599093	115599293	+	1	NA	NA	NA	17477	NM_001145898	399568	Mm.134929	NM_207264	ENSMUSG00000040282	BC052040	-	cDNA sequence BC052040	protein-coding	0.005000	0.457711	
mm_19639.1	chr2	102829366	102829566	-	1	NA	NA	NA	72199	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.010000	0.393035	
mm_54643.1	chr6	38875777	38875977	-	1	NA	NA	NA	313	NM_010433	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.120000	0.716418	
mm_1664.1	chr1	74771638	74771838	+	1	NA	NA	NA	-154	NM_009526	22420	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	0.110000	0.786070	
mm_171049.1	chr3	102832566	102832766	+	1	NA	NA	NA	-49952	NM_001165940	22094	Mm.110730	NM_009432	ENSMUSG00000027857	Tshb	-	thyroid stimulating hormone, beta subunit	protein-coding	0.035000	0.407960	
mm_157968.1	chrX	91782895	91783095	-	1	NA	NA	NA	-19	NM_028847	74271	Mm.141337	NM_028847	ENSMUSG00000061392	Mageb5	1700056A17Rik|mMage-b5	melanoma antigen, family B, 5	protein-coding	0.005000	0.383085	
mm_2826.1	chr1	131149633	131149833	+	1	NA	NA	NA	-3474	NM_001136070	16865	Mm.276294	NM_010709	ENSMUSG00000026427	Eif2d	D1Ertd5e|Lgtn	eukaryotic translation initiation factor 2D	protein-coding	0.000000	0.577114	-35(CACTATAAAAGG,-,0.00)
mm_167619.1	chr9	57708521	57708721	+	1	NA	NA	NA	52	NM_153799	353190	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	0.105000	0.691542	
mm_159938.1	chr6	80019395	80019595	+	1	NA	NA	NA	-148	NM_001347261	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.040000	0.562189	
mm_129373.1	chr15	78119880	78120080	-	1	NA	NA	NA	-700	NM_007583	12300	Mm.277338	NM_007583	ENSMUSG00000019146	Cacng2	AW060990|B230105C07Rik|B930041E13Rik|stargazer|stargazin|stg|wag|waggler	calcium channel, voltage-dependent, gamma subunit 2	protein-coding	0.080000	0.666667	
mm_82522.1	chr9	20642531	20642731	-	1	NA	NA	NA	175	NM_013911	30843	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding	0.040000	0.587065	
mm_116712.1	chr13	51567973	51568173	-	1	NA	NA	NA	-989	NM_009167	20418	Mm.131870	NM_009167	ENSMUSG00000021448	Shc3	N-Shc|Rai|ShcC	src homology 2 domain-containing transforming protein C3	protein-coding	0.030000	0.442786	-48(TTCTTTAAAAGC,-,0.00),-47(TCTTTAAAAGCC,+,0.00)
mm_102581.1	chr11	61761961	61762161	-	1	NA	NA	NA	27	NM_144806	212627	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0.100000	0.676617	
mm_127925.1	chr15	10272006	10272206	-	1	NA	NA	NA	-21545	NM_001253782	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.010000	0.477612	-35(GCGTTTTAAAAG,-,0.00),-34(CGTTTTAAAAGC,-,0.00),-33(GTTTTAAAAGCC,+,0.00)
mm_105282.1	chr11	102435173	102435373	-	1	NA	NA	NA	4951	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.025000	0.557214	
mm_8338.1	chr1	150164722	150164922	-	1	NA	NA	NA	126	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.025000	0.427861	-33(GGCTTTTAATGA,-,0.00)
mm_172725.1	chr8	73319598	73319798	-	1	NA	NA	NA	33842	NM_001317391	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.005000	0.313433	
mm_19211.1	chr2	84601374	84601574	-	1	NA	NA	NA	49036	NM_001085453	12388	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.010000	0.462687	
mm_79014.1	chr9	45838482	45838682	+	1	NA	NA	NA	37	NM_011792	23821	Mm.24044	NM_011792	ENSMUSG00000032086	Bace1	ASP2|Bace|C76936	beta-site APP cleaving enzyme 1	protein-coding	0.035000	0.616915	
mm_42990.1	chr5	123310439	123310639	+	1	NA	NA	NA	-33909	NM_029850	77045	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0.020000	0.547264	
mm_78290.1	chr9	22225647	22225847	+	1	NA	NA	NA	35	NM_001164624	235047	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	0.050000	0.601990	
mm_54673.1	chr6	39347331	39347531	-	1	NA	NA	NA	30276	NM_028123	72144	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0.015000	0.507463	
mm_13136.1	chr2	91963774	91963974	+	1	NA	NA	NA	-311	NM_138306	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.045000	0.611940	
mm_161089.1	chr12	87816479	87816679	+	1	NA	NA	NA	2	NM_001177573	544881	Mm.327146	NM_001033788	ENSMUSG00000079031	BB287469	-	expressed sequence BB287469	protein-coding	0.025000	0.507463	
mm_89741.1	chr10	99025316	99025516	+	1	NA	NA	NA	-81755	NM_027740	382406	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.025000	0.402985	
mm_39462.1	chr5	17828836	17829036	+	1	NA	NA	NA	6960	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.025000	0.472637	
mm_71248.1	chr8	40914963	40915163	+	1	NA	NA	NA	-11170	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.020000	0.457711	
mm_168350.1	chr11	12904760	12904960	+	1	NA	NA	NA	-439900	NM_001282993	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.010000	0.373134	
mm_56072.1	chr6	86795613	86795813	-	1	NA	NA	NA	-2129	NM_013471	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.015000	0.532338	
mm_9426.1	chr1	172481964	172482164	-	1	NA	NA	NA	-149	NM_001145800	93842	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	0.110000	0.666667	
mm_60771.1	chr7	45557443	45557643	+	1	NA	NA	NA	2615	NM_025330	66065	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.010000	0.542289	
mm_15913.1	chr2	165063463	165063663	+	1	NA	NA	NA	7927	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.015000	0.527363	
mm_110173.1	chr12	27336733	27336933	-	1	NA	NA	NA	5885	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.010000	0.363184	43(GAGTTTATAAGA,-,0.00)
mm_129809.1	chr15	82993864	82994064	-	1	NA	NA	NA	29174	NM_028728	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.020000	0.547264	
mm_141958.1	chr17	35118399	35118599	-	1	NA	NA	NA	2793	NM_001303476	13001	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	0.045000	0.577114	
mm_67001.1	chr7	64925497	64925697	-	1	NA	NA	NA	-52557	NM_023239	66647	Mm.19944	NM_023239	ENSMUSG00000070520	Ndnl2	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Nsmce3|mage-g1	necdin-like 2	protein-coding	0.010000	0.497512	
mm_132723.1	chr16	43610634	43610834	+	1	NA	NA	NA	-29921	NR_030576	100124467		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.025000	0.641791	
mm_67832.1	chr7	98361185	98361385	-	1	NA	NA	NA	3	NM_001168540	244152	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.130000	0.731343	
mm_10004.1	chr1	191565808	191566008	-	1	NA	NA	NA	9636	NM_001305233	76843	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	0.000000	0.283582	
mm_151435.1	chr19	57360596	57360796	+	1	NA	NA	NA	203	NR_040316	320879	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	0.090000	0.592040	
mm_2649.1	chr1	125561012	125561212	+	1	NA	NA	NA	96	NM_028787	74150	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0.105000	0.731343	
mm_59551.1	chr7	28071136	28071336	+	1	NA	NA	NA	0	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.035000	0.592040	
mm_97800.1	chr11	82952010	82952210	+	1	NA	NA	NA	8	NM_183201	327978	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	0.050000	0.606965	
mm_112100.1	chr12	112785197	112785397	-	1	NA	NA	NA	-23678	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.020000	0.512438	
mm_77024.1	chr8	108584627	108584827	-	1	NA	NA	NA	-50	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.035000	0.527363	38(CCCTTTAAATGA,-,0.00)
mm_162631.1	chr1	187942809	187943009	+	1	NA	NA	NA	-54918	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.020000	0.477612	
mm_164728.1	chr17	59040725	59040925	-	1	NA	NA	NA	-27503	NM_026497	67993	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.010000	0.308458	
mm_98009.1	chr11	84180235	84180435	+	1	NA	NA	NA	-12859	NM_001037932	628813	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690|OTTMUSG00000000997	predicted gene 11437	protein-coding	0.075000	0.651741	
mm_150127.1	chr19	30030384	30030584	+	1	NA	NA	NA	-29	NM_144873	109113	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0.105000	0.666667	
mm_29988.1	chr3	135437895	135438095	-	1	NA	NA	NA	670	NR_030689	319587	Mm.358971	NR_030689	ENSMUSG00000097032	4930539J05Rik	8030475D13Rik	RIKEN cDNA 4930539J05 gene	ncRNA	0.085000	0.636816	
mm_166609.1	chr6	69632114	69632314	-	1	NA	NA	NA	-305040	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.368159	-30(TTGTTTTAAAGC,-,0.00)
mm_46033.1	chr5	91949519	91949719	-	1	NA	NA	NA	12937	NR_073442	68098	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0.020000	0.457711	
mm_10219.1	chr2	5951408	5951608	+	1	NA	NA	NA	39	NM_001081132	326622	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	0.090000	0.706468	
mm_114582.1	chr13	75707429	75707629	+	1	NA	NA	NA	45	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.110000	0.706468	
mm_144492.1	chr18	24205600	24205800	+	1	NA	NA	NA	-294	NM_001160404	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.200000	0.830846	
mm_78795.1	chr9	44046703	44046903	+	1	NA	NA	NA	3419	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.040000	0.552239	
mm_167040.1	chr7	79825723	79825923	-	1	NA	NA	NA	15096	NM_008589	17293	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0.030000	0.592040	
mm_153448.1	chr19	41031029	41031229	-	1	NA	NA	NA	1854	NM_009345	21673	Mm.25620	NM_009345	ENSMUSG00000025014	Dntt	Tdt	deoxynucleotidyltransferase, terminal	protein-coding	0.015000	0.552239	
mm_27885.1	chr3	79173254	79173454	-	1	NA	NA	NA	-27479	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.025000	0.457711	
mm_7167.1	chr1	92048922	92049122	-	1	NA	NA	NA	131319	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.005000	0.497512	
mm_124382.1	chr14	108882500	108882700	-	1	NA	NA	NA	31639	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.005000	0.412935	
mm_8931.1	chr1	164152849	164153049	-	1	NA	NA	NA	-732	NR_037987	100503816	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	0.025000	0.368159	
mm_85386.1	chr9	103227962	103228162	-	1	NA	NA	NA	2224	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.055000	0.577114	-90(CCATTAAGACCC,+,0.00)
mm_113861.1	chr13	48260986	48261186	+	1	NA	NA	NA	-341	NM_031166	15904	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding	0.150000	0.726368	
mm_70973.1	chr8	27141364	27141564	+	1	NA	NA	NA	-1446	NR_045840	71082	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.005000	0.328358	
mm_61856.1	chr7	88308018	88308218	+	1	NA	NA	NA	30033	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.005000	0.393035	
mm_43226.1	chr5	129845754	129845954	+	1	NA	NA	NA	-1136	NM_026445	67902	Mm.103546	NM_026445	ENSMUSG00000025538	Sumf2	2610040F05Rik	sulfatase modifying factor 2	protein-coding	0.025000	0.442786	
mm_95955.1	chr11	58640312	58640512	+	1	NA	NA	NA	-53	NM_001039047	216781	Mm.339507	NM_001039047	ENSMUSG00000037124	Trim58	Gm16|Gm1783	tripartite motif-containing 58	protein-coding	0.040000	0.611940	
mm_40525.1	chr5	57919466	57919666	+	1	NA	NA	NA	201485	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.000000	0.363184	
mm_17286.1	chr2	26140399	26140599	-	1	NA	NA	NA	7	NM_001256521	109299	Mm.389259	NM_001256521		C330006A16Rik	AI551216	RIKEN cDNA C330006A16 gene	protein-coding	0.160000	0.701493	
mm_147342.1	chr18	43059530	43059730	-	1	NA	NA	NA	-159	NM_028392	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.025000	0.482587	
mm_146917.1	chr18	31605457	31605657	-	1	NA	NA	NA	4345	NM_026165	67453	Mm.23896	NM_026165	ENSMUSG00000024259	Slc25a46	1200007B05Rik|AI325987	solute carrier family 25, member 46	protein-coding	0.000000	0.268657	
mm_79989.1	chr9	67012987	67013187	+	1	NA	NA	NA	30784	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.010000	0.542289	
mm_42879.1	chr5	122309062	122309262	+	1	NA	NA	NA	24764	NM_177242	320717	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0.015000	0.427861	
mm_38504.1	chr4	141115267	141115467	-	1	NA	NA	NA	24429	NR_102344	213491	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0.005000	0.393035	
mm_129856.1	chr15	83237873	83238073	-	1	NA	NA	NA	13758	NM_001170954	239559	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	0.015000	0.497512	
mm_41541.1	chr5	92876266	92876466	+	1	NA	NA	NA	-21627	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.000000	0.263682	-44(TTTTATATAGTG,+,0.00),22(ACCTATAAAGAG,-,0.00)
mm_150846.1	chr19	44988987	44989187	+	1	NA	NA	NA	-257	NM_011976	26456	Mm.34404	NM_011976	ENSMUSG00000025207	Sema4g	AI507908|AW554132	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	protein-coding	0.060000	0.636816	
mm_130862.1	chr15	102188941	102189141	-	1	NA	NA	NA	2	NM_144942	246277	Mm.296382	NM_144942	ENSMUSG00000023044	Csad	Csd	cysteine sulfinic acid decarboxylase	protein-coding	0.020000	0.512438	
mm_56275.1	chr6	91116376	91116576	-	1	NA	NA	NA	350	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.125000	0.761194	
mm_39386.1	chr5	13398588	13398788	+	1	NA	NA	NA	-309	NM_001243073	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.020000	0.482587	
mm_86524.1	chr10	7792817	7793017	+	1	NA	NA	NA	23	NM_026141	67418	Mm.38927	NM_026141	ENSMUSG00000015757	Ppil4	3732410E19Rik|3830425H19Rik|AI788954|AW146233|PPIase	peptidylprolyl isomerase (cyclophilin)-like 4	protein-coding	0.135000	0.666667	
mm_72426.1	chr8	82863190	82863390	+	1	NA	NA	NA	-66	NM_177378	330812	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	0.030000	0.532338	
mm_43841.1	chr5	143027718	143027918	+	1	NA	NA	NA	67463	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.015000	0.482587	-34(GTGTATATAAGC,-,0.00)
mm_73391.1	chr8	105708156	105708356	+	1	NA	NA	NA	-47	NM_027655	71046	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	0.020000	0.522388	
mm_15035.1	chr2	152756676	152756876	+	1	NA	NA	NA	2603	NM_053091	84682	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit IV isoform 2	protein-coding	0.015000	0.502488	
mm_5909.1	chr1	55003388	55003588	-	1	NA	NA	NA	23990	NM_031179	81898	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	0.015000	0.422886	
mm_83273.1	chr9	43063936	43064136	-	1	NA	NA	NA	41682	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0.000000	0.368159	
mm_18342.1	chr2	58156876	58157076	-	1	NA	NA	NA	3146	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.000000	0.402985	59(TTTTTTAAAGTG,+,0.00)
mm_99996.1	chr11	114789537	114789737	+	1	NA	NA	NA	6255	NM_028055	72014	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0.025000	0.542289	
mm_101395.1	chr11	26570049	26570249	-	1	NA	NA	NA	23771	NM_027260	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.005000	0.393035	
mm_31330.1	chr4	46451022	46451222	+	1	NA	NA	NA	196	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.140000	0.761194	
mm_115139.1	chr13	104684814	104685014	+	1	NA	NA	NA	132039	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.005000	0.472637	
mm_155892.1	chrX	101652381	101652581	+	1	NA	NA	NA	12263	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.010000	0.437811	
mm_123385.1	chr14	63321448	63321648	-	1	NA	NA	NA	-76277	NM_001310610	14463	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0.010000	0.492537	
mm_33612.1	chr4	132608452	132608652	+	1	NA	NA	NA	-30494	NM_210071	14050	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0.005000	0.472637	6(CTTTATAAATCC,+,0.00)
mm_19190.1	chr2	84422408	84422608	-	1	NA	NA	NA	2758	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.005000	0.318408	
mm_73267.1	chr8	104430626	104430826	+	1	NA	NA	NA	12321	NM_001013380	234663	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	0.000000	0.402985	
mm_124273.1	chr14	103017045	103017245	-	1	NA	NA	NA	16658	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.020000	0.457711	
mm_52530.1	chr6	115762176	115762376	+	1	NA	NA	NA	190	NM_001168256	94346	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0.030000	0.562189	
mm_171765.1	chr5	107900498	107900698	+	1	NA	NA	NA	70	NM_016980	100503670	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	0.090000	0.641791	
mm_71825.1	chr8	68896497	68896697	+	1	NA	NA	NA	16042	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.025000	0.512438	-79(TCCTAAAAAGCC,+,0.00)
mm_171610.1	chr4	150152959	150153159	-	1	NA	NA	NA	4087	NM_001085529	435818	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	OTTMUSG00000010396	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0.010000	0.338308	
mm_1367.1	chr1	66421639	66421839	+	1	NA	NA	NA	-46708	NM_175510	329178	Mm.44798	NM_175510	ENSMUSG00000055567	Unc80	C030018G13Rik|C230061B10Rik|UNC-80	unc-80, NALCN activator	protein-coding	0.020000	0.482587	
mm_149081.1	chr19	8898009	8898209	+	1	NA	NA	NA	52	NM_008060	14376	Mm.3196	NM_008060	ENSMUSG00000071650	Ganab	AU042638|G2an|GluII|mKIAA0088	alpha glucosidase 2 alpha neutral subunit	protein-coding	0.120000	0.701493	
mm_6946.1	chr1	85734381	85734581	-	1	NA	NA	NA	2125	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.030000	0.452736	
mm_109241.1	chr12	109452655	109452855	+	1	NA	NA	NA	-68	NR_033813	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.035000	0.592040	
mm_44790.1	chr5	32299575	32299775	-	1	NA	NA	NA	-53905	NM_172147	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0.010000	0.507463	-33(GGGTATAAAGGG,-,0.00)
mm_142775.1	chr17	50091517	50091717	-	1	NA	NA	NA	98880	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.000000	0.462687	-5(GGCTTTAAATAC,-,0.00)
mm_58474.1	chr7	3390930	3391130	+	1	NA	NA	NA	-3012	NM_133190	81905	Mm.357990	NM_133190	ENSMUSG00000053395	Cacng8	-	calcium channel, voltage-dependent, gamma subunit 8	protein-coding	0.035000	0.537313	
mm_20775.1	chr2	143862842	143863042	-	1	NA	NA	NA	231	NM_009751	12075	Mm.275937	NM_009751	ENSMUSG00000027420	Bfsp1	CP95	beaded filament structural protein 1, in lens-CP94	protein-coding	0.125000	0.746269	
mm_158922.1	chr1	59163206	59163406	-	1	NA	NA	NA	83	NM_001164682	227157	Mm.474049	NM_145143	ENSMUSG00000079550	Mpp4	Dlg6	membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)	protein-coding	0.020000	0.522388	
mm_70039.1	chr7	142577467	142577667	-	1	NA	NA	NA	-420	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.025000	0.562189	6(GCTCTTAGAGAG,+,0.00)
mm_127897.1	chr15	9356975	9357175	-	1	NA	NA	NA	21477	NM_144845	223337	Mm.422853	NM_144845	ENSMUSG00000049152	Ugt3a2	AI313915	UDP glycosyltransferases 3 family, polypeptide A2	protein-coding	0.030000	0.497512	
mm_157460.1	chrX	44368241	44368441	-	1	NA	NA	NA	-4	NM_175539	245403	Mm.55270	NM_175539	ENSMUSG00000050926	Dcaf12l2	A130007F10Rik|Wdr40c	DDB1 and CUL4 associated factor 12-like 2	protein-coding	0.030000	0.621891	
mm_81849.1	chr9	118570419	118570619	+	1	NA	NA	NA	-36190	NM_133721	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.000000	0.398010	
mm_82818.1	chr9	31029839	31030039	-	1	NA	NA	NA	-705	NM_001115130	235132	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.050000	0.547264	
mm_113083.1	chr13	23839482	23839682	+	1	NA	NA	NA	148	NM_134069	105355	Mm.27038	NM_134069	ENSMUSG00000036083	Slc17a3	AW261723|Npt4	solute carrier family 17 (sodium phosphate), member 3	protein-coding	0.005000	0.472637	
mm_71228.1	chr8	40904391	40904591	+	1	NA	NA	NA	-21742	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.030000	0.507463	47(GCTTTTATGCCT,+,0.00)
mm_59508.1	chr7	27566302	27566502	+	1	NA	NA	NA	5926	NM_001122767	66367	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	0.000000	0.378109	
mm_166569.1	chr6	48988436	48988636	+	1	NA	NA	NA	1675	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.015000	0.532338	
mm_13700.1	chr2	117126114	117126314	+	1	NA	NA	NA	5143	NM_033524	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.000000	0.477612	
mm_125445.1	chr15	46623263	46623463	+	1	NA	NA	NA	58	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0.030000	0.542289	66(CCTTTTCAAGCA,+,0.00)
mm_26264.1	chr3	142501219	142501419	+	1	NA	NA	NA	4385	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.000000	0.512438	
mm_137871.1	chr17	31432959	31433159	+	1	NA	NA	NA	46825	NM_001163748	18585	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	0.005000	0.497512	
mm_11749.1	chr2	38369002	38369202	+	1	NA	NA	NA	17794	NM_010710	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.035000	0.512438	
mm_171026.1	chr2	87716685	87716885	+	1	NA	NA	NA	-4881	NM_001011833	258101	Mm.377350	NM_001011833	ENSMUSG00000075150	Olfr1137	MOR177-20|MOR40-9P	olfactory receptor 1137	protein-coding	0.030000	0.487562	
mm_8375.1	chr1	151155074	151155274	-	1	NA	NA	NA	17140	NR_038011	402734	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.005000	0.353234	
mm_165973.1	chr4	101728424	101728624	+	1	NA	NA	NA	11117	NM_010704	16847	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.010000	0.333333	-6(TTTTTTAAAGCA,+,0.00)
mm_11273.1	chr2	30061809	30062009	+	1	NA	NA	NA	-87	NM_023871	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.070000	0.671642	
mm_112626.1	chr13	15850848	15851048	+	1	NA	NA	NA	43705	NR_046131	328190	Mm.446957	NR_046131		A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0.010000	0.472637	45(CCTTTTATGCAT,+,0.00)
mm_146778.1	chr18	20059530	20059730	-	1	NA	NA	NA	-76	NM_001317365	13506	Mm.280547	NM_013505	ENSMUSG00000024331	Dsc2	AW228162	desmocollin 2	protein-coding	0.025000	0.626866	
mm_46775.1	chr5	112343387	112343587	-	1	NA	NA	NA	392	NM_138646	192232	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	Hermansky-Pudlak syndrome 4	protein-coding	0.035000	0.557214	
mm_22804.1	chr3	26637553	26637753	+	1	NA	NA	NA	22	NM_027583	70862	Mm.330943	NM_027583	ENSMUSG00000039335	Spata16	4921511F01Rik|4930503K02Rik|Nyd-sp12	spermatogenesis associated 16	protein-coding	0.040000	0.522388	
mm_42451.1	chr5	115434983	115435183	+	1	NA	NA	NA	5398	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.020000	0.587065	
mm_11793.1	chr2	43195598	43195798	+	1	NA	NA	NA	-359627	NM_001289593	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.070000	0.597015	
mm_95810.1	chr11	55110247	55110447	+	1	NA	NA	NA	12362	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.005000	0.427861	
mm_60645.1	chr7	44850278	44850478	+	1	NA	NA	NA	371	NM_001253920	67605	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	0.095000	0.706468	
mm_8286.1	chr1	140183310	140183510	-	1	NA	NA	NA	1	NM_009888	12628	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0.010000	0.432836	
mm_79828.1	chr9	64789553	64789753	+	1	NA	NA	NA	-21358	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.020000	0.407960	
mm_172640.1	chr8	25454150	25454350	+	1	NA	NA	NA	-64509	NM_001079909	14182	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.055000	0.577114	
mm_153192.1	chr19	34514992	34515192	-	1	NA	NA	NA	12382	NM_001111100	16889	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.000000	0.343284	
mm_90679.1	chr10	128909337	128909537	+	1	NA	NA	NA	92	NM_001282966	12512	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.030000	0.582090	
mm_11788.1	chr2	43128589	43128789	+	1	NA	NA	NA	-426636	NM_001289593	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.015000	0.517413	-78(CAGTATTAAAGA,-,0.00)
mm_6343.1	chr1	71638416	71638616	-	1	NA	NA	NA	14718	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.045000	0.532338	
mm_93224.1	chr10	95264856	95265056	-	1	NA	NA	NA	58753	NM_001330138	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.065000	0.601990	
mm_116537.1	chr13	45885686	45885886	-	1	NA	NA	NA	79205	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.000000	0.363184	
mm_86777.1	chr10	20148896	20149096	+	1	NA	NA	NA	76	NM_001198635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.160000	0.796020	
mm_2460.1	chr1	105304806	105305006	+	1	NA	NA	NA	51804	NM_178779	320311	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	0.000000	0.422886	
mm_157822.1	chrX	74085249	74085449	-	1	NA	NA	NA	341	NM_010788	17257	Mm.131408	NM_010788	ENSMUSG00000031393	Mecp2	1500041B07Rik|D630021H01Rik|Mbd5|WBP10	methyl CpG binding protein 2	protein-coding	0.125000	0.711443	
mm_21992.1	chr2	167643683	167643883	-	1	NA	NA	NA	-11778	NM_023230	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.030000	0.611940	
mm_2841.1	chr1	131638183	131638383	+	1	NA	NA	NA	-31	NM_007799	13034	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	0.015000	0.452736	
mm_173335.1	chrY	90811101	90811301	+	1	NA	NA	NA	25759	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.005000	0.383085	
mm_98697.1	chr11	96303477	96303677	+	1	NA	NA	NA	65	NM_008268	15413	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	0.050000	0.452736	
mm_106347.1	chr11	118393331	118393531	-	1	NA	NA	NA	8500	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.010000	0.502488	
mm_140661.1	chr17	12895476	12895676	-	1	NA	NA	NA	14424	NM_001034866	240023	Mm.242315	NM_001034866	ENSMUSG00000073460	Pnldc1	Gm313	poly(A)-specific ribonuclease (PARN)-like domain containing 1	protein-coding	0.020000	0.497512	
mm_52038.1	chr6	96258527	96258727	+	1	NA	NA	NA	-92422	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo	0.015000	0.348259	
mm_140392.1	chr17	87446579	87446779	+	1	NA	NA	NA	256	NM_007589	12314	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017	calmodulin 2	protein-coding	0.065000	0.592040	-94(TCATCTAAAAGG,-,0.00)
mm_80859.1	chr9	98486018	98486218	+	1	NA	NA	NA	-4419	NM_009034	19660	Mm.12825	NM_009034	ENSMUSG00000032454	Rbp2	Crbp-2|CrbpII|Rbp-2	retinol binding protein 2, cellular	protein-coding	0.005000	0.497512	
mm_41966.1	chr5	107331042	107331242	+	1	NA	NA	NA	-52	NM_001079873	114642	Mm.182836	NM_054054	ENSMUSG00000029279	Brdt	7420412D09Rik|Brd6|Fsrg3	bromodomain, testis-specific	protein-coding	0.085000	0.666667	18(TCCCATAAAGGC,-,0.00)
mm_21217.1	chr2	155819086	155819286	-	1	NA	NA	NA	17	NR_015528	613262	Mm.330707	NR_015528	ENSMUSG00000074649	BC029722	-	cDNA sequence BC029722	ncRNA	0.060000	0.616915	
mm_120478.1	chr14	65975531	65975731	+	1	NA	NA	NA	7148	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.035000	0.552239	
mm_106430.1	chr11	119355405	119355605	-	1	NA	NA	NA	5	NM_018822	27029	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	0.100000	0.671642	
mm_37290.1	chr4	119176640	119176840	-	1	NA	NA	NA	-2545	NM_001145936	195522	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	0.005000	0.412935	-79(GCTTTTCTAGCA,+,0.00)
mm_91255.1	chr10	23176918	23177118	-	1	NA	NA	NA	172872	NM_001347372	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.010000	0.338308	
mm_148997.1	chr19	8664222	8664422	+	1	NA	NA	NA	317	NM_001112697	12669	Mm.240607	NM_007698	ENSMUSG00000032773	Chrm1	Chrm-1|M1|M1R	cholinergic receptor, muscarinic 1, CNS	protein-coding	0.025000	0.666667	
mm_150133.1	chr19	30056904	30057104	+	1	NA	NA	NA	26491	NM_144873	109113	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0.020000	0.388060	0(GGCTTTAAGAGC,-,0.00),1(GCTTTAAGAGCG,+,0.00)
mm_49145.1	chr6	11907763	11907963	+	1	NA	NA	NA	-417	NM_010886	17992	Mm.415865	NM_010886	ENSMUSG00000029632	Ndufa4	MLRQ	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4	protein-coding	0.155000	0.776119	
mm_114266.1	chr13	58073177	58073377	+	1	NA	NA	NA	29151	NM_001195075	100503085	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0.000000	0.537313	
mm_171781.1	chr5	110097363	110097563	-	1	NA	NA	NA	-2506	NM_207279	403178	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0.020000	0.452736	
mm_71738.1	chr8	62951105	62951305	+	1	NA	NA	NA	-27	NM_001252620	72902	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding	0.015000	0.542289	-26(CCTTTTCTGGAG,+,0.00)
mm_117315.1	chr13	67609581	67609781	-	1	NA	NA	NA	26	NM_001163246	100416706	Mm.478045	NM_001163246	ENSMUSG00000058093	Zfp729b	AA987127	zinc finger protein 729b	protein-coding	0.025000	0.532338	
mm_109001.1	chr12	103310920	103311120	+	1	NA	NA	NA	3749	NR_136894	102632488	Mm.109435	NR_136894	ENSMUSG00000100789	Gm29508	-	predicted gene 29508	ncRNA	0.005000	0.512438	
mm_97394.1	chr11	77802330	77802530	+	1	NA	NA	NA	1132	NM_001291215	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.015000	0.577114	
mm_154519.1	chrM	12934	13134	-	1	NA	NA	NA	NA	NA									0.045000	0.422886	-65(GGGTTTATGAGG,-,0.00)
mm_73559.1	chr8	109247212	109247412	+	1	NA	NA	NA	93596	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo	0.020000	0.572139	
mm_160010.1	chr6	124998246	124998446	+	1	NA	NA	NA	-91	NM_001145927	319352	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.020000	0.532338	
mm_24761.1	chr3	95499119	95499319	+	1	NA	NA	NA	9	NM_007802	13038	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.030000	0.487562	
mm_93679.1	chr10	117779141	117779341	-	1	NA	NA	NA	13464	NM_134010	103468	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.015000	0.482587	
mm_150835.1	chr19	44825136	44825336	+	1	NA	NA	NA	10702	NR_045315	73322	Mm.250457	NR_045315	ENSMUSG00000092369	1700039E22Rik	-	RIKEN cDNA 1700039E22 gene	ncRNA	0.025000	0.477612	
mm_7790.1	chr1	131490170	131490370	-	1	NA	NA	NA	37091	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.000000	0.323383	
mm_59580.1	chr7	28129283	28129483	+	1	NA	NA	NA	-83	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.020000	0.562189	
mm_2943.1	chr1	132329875	132330075	+	1	NA	NA	NA	13850	NM_001195025	74137	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.035000	0.547264	-27(CCCTATATAGAT,+,0.00)
mm_144481.1	chr18	23954761	23954961	+	1	NA	NA	NA	173	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.110000	0.681592	
mm_66072.1	chr7	30880177	30880377	-	1	NA	NA	NA	65	NR_102723	12483	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	0.025000	0.472637	
mm_30127.1	chr3	141931471	141931671	-	1	NA	NA	NA	17	NM_001277218	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.020000	0.552239	
mm_80864.1	chr9	98504660	98504860	+	1	NA	NA	NA	14223	NM_009034	19660	Mm.12825	NM_009034	ENSMUSG00000032454	Rbp2	Crbp-2|CrbpII|Rbp-2	retinol binding protein 2, cellular	protein-coding	0.010000	0.562189	
mm_152087.1	chr19	6907582	6907782	-	1	NA	NA	NA	1963	NM_012021	54683	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.015000	0.542289	
mm_103388.1	chr11	75416185	75416385	-	1	NA	NA	NA	6338	NM_011340	20317	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.035000	0.592040	
mm_26777.1	chr3	9004325	9004525	-	1	NA	NA	NA	90	NM_009412	21985	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.155000	0.771144	
mm_121598.1	chr14	7994446	7994646	-	1	NA	NA	NA	-364	NM_007870	13421	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.010000	0.552239	
mm_157462.1	chrX	44790058	44790258	-	1	NA	NA	NA	3	NM_001190718	245404	Mm.55685	NM_178739	ENSMUSG00000045284	Dcaf12l1	9330180J20|A230038L21Rik|Decaf12l1|Wdr40b	DDB1 and CUL4 associated factor 12-like 1	protein-coding	0.070000	0.641791	
mm_7301.1	chr1	97976987	97977187	-	1	NA	NA	NA	70706	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA	0.130000	0.776119	
mm_21132.1	chr2	154206380	154206580	-	1	NA	NA	NA	6100	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.035000	0.592040	
mm_52405.1	chr6	113378075	113378275	+	1	NA	NA	NA	62	NM_001170485	68089	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	0.085000	0.671642	
mm_105359.1	chr11	103101536	103101736	-	1	NA	NA	NA	22	NM_152813	72469	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	0.105000	0.701493	
mm_171153.1	chr3	18009065	18009265	+	1	NA	NA	NA	-45160	NM_021560	59058	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0.025000	0.482587	
mm_56678.1	chr6	113740592	113740792	-	1	NA	NA	NA	-11	NM_024206	110379	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0.090000	0.616915	
mm_87164.1	chr10	36974996	36975196	+	1	NA	NA	NA	552	NM_008229	15182	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.080000	0.721393	
mm_24955.1	chr3	96643710	96643910	+	1	NA	NA	NA	-1774	NM_001302471	213119	Mm.32741	NM_001081053	ENSMUSG00000090210	Itga10	A630048L14	integrin, alpha 10	protein-coding	0.025000	0.572139	
mm_55314.1	chr6	54992831	54993031	-	1	NA	NA	NA	-64	NM_026637	110175	Mm.294708	NM_026637	ENSMUSG00000002797	Ggct	A030007L17Rik|AA673177|Gctg|Ggc	gamma-glutamyl cyclotransferase	protein-coding	0.090000	0.646766	
mm_166288.1	chr5	98953998	98954198	-	1	NA	NA	NA	82981	NM_008926	19092	Mm.263002	NM_008926	ENSMUSG00000029334	Prkg2	AW212535|CGKII|Prkgr2|cGK-II	protein kinase, cGMP-dependent, type II	protein-coding	0.010000	0.437811	
mm_72179.1	chr8	72319527	72319727	+	1	NA	NA	NA	565	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.110000	0.756219	
mm_81656.1	chr9	110960793	110960993	+	1	NA	NA	NA	9348	NM_028838	74249	Mm.307615	NM_028838	ENSMUSG00000032495	Lrrc2	2400002D05Rik|4933431K03Rik	leucine rich repeat containing 2	protein-coding	0.025000	0.532338	
mm_44593.1	chr5	24995706	24995906	-	1	NA	NA	NA	-53	NM_001310480	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.030000	0.537313	
mm_151375.1	chr19	55933078	55933278	+	1	NA	NA	NA	37857	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.005000	0.313433	5(CCCTTAAGGGCC,+,0.00)
mm_82130.1	chr9	123520501	123520701	+	1	NA	NA	NA	-9281	NM_030692	83493	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.010000	0.487562	
mm_66910.1	chr7	60003047	60003247	-	1	NA	NA	NA	2009	NM_013670	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding	0.020000	0.522388	
mm_44193.1	chr5	3502481	3502681	-	1	NA	NA	NA	-41252	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.020000	0.442786	-81(GTATTTATAGCG,+,0.00)
mm_145852.1	chr18	65453828	65454028	+	1	NA	NA	NA	22931	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.393035	1(TAGTTTTTAAGG,-,0.00),3(GTTTTTAAGGAG,+,0.00)
mm_125848.1	chr15	74959009	74959209	+	1	NA	NA	NA	4003	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.005000	0.497512	
mm_1853.1	chr1	84276793	84276993	+	1	NA	NA	NA	7752	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.000000	0.507463	
mm_75595.1	chr8	61697933	61698133	-	1	NA	NA	NA	62065	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.010000	0.368159	
mm_64052.1	chr7	140835481	140835681	+	1	NA	NA	NA	85	NM_029821	76974	Mm.272359	NM_029821	ENSMUSG00000025481	Urah	1190003J15Rik|2810420C16Rik	urate (5-hydroxyiso-) hydrolase	protein-coding	0.040000	0.597015	
mm_55960.1	chr6	85451778	85451978	-	1	NA	NA	NA	92	NR_028081	73327	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	0.080000	0.592040	
mm_46409.1	chr5	104093155	104093355	-	1	NA	NA	NA	-15647	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.035000	0.482587	
mm_151017.1	chr19	46761738	46761938	+	1	NA	NA	NA	229	NM_001102471	94219	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0.080000	0.686567	
mm_141380.1	chr17	29078888	29079088	-	1	NA	NA	NA	138	NR_036469	100504267	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|OTTMUSG00000031656|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0.030000	0.582090	
mm_27712.1	chr3	67515621	67515821	-	1	NA	NA	NA	-198	NM_001164763	109222	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	0.035000	0.582090	
mm_124024.1	chr14	76556813	76557013	-	1	NA	NA	NA	-24	NR_027699	72661	Mm.320384	NM_001160326	ENSMUSG00000052584	Serp2	2810032E02Rik	stress-associated endoplasmic reticulum protein family member 2	protein-coding	0.100000	0.701493	
mm_84278.1	chr9	62811566	62811766	-	1	NA	NA	NA	-18	NM_010193	14155	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.140000	0.756219	
mm_83618.1	chr9	48799567	48799767	-	1	NA	NA	NA	36278	NM_001033324	235320	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0.000000	0.402985	
mm_41638.1	chr5	97961910	97962110	+	1	NA	NA	NA	68952	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.015000	0.482587	
mm_64381.1	chr7	142471774	142471974	+	1	NA	NA	NA	31	NM_019391	16985	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.020000	0.646766	
mm_13430.1	chr2	104821270	104821470	+	1	NA	NA	NA	-4674	NM_001123327	99003	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	0.005000	0.437811	
mm_112925.1	chr13	20936480	20936680	+	1	NA	NA	NA	136719	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.005000	0.417910	
mm_2998.1	chr1	133241139	133241339	+	1	NA	NA	NA	-4858	NM_001160268	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding	0.015000	0.567164	
mm_33628.1	chr4	132794957	132795157	+	1	NA	NA	NA	1307	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.020000	0.532338	
mm_102272.1	chr11	55395062	55395262	-	1	NA	NA	NA	24918	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.000000	0.452736	
mm_37137.1	chr4	116821380	116821580	-	1	NA	NA	NA	28	NM_146256	242642	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	0.060000	0.597015	
mm_53361.1	chr6	129361787	129361987	+	1	NA	NA	NA	11643	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.005000	0.457711	
mm_22026.1	chr2	168049979	168050179	-	1	NA	NA	NA	-30925	NM_021409	58220	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0.010000	0.477612	-34(GTCTTTAAATGG,-,0.00),-32(CTTTAAATGGGG,+,0.00),5(TCTTTAAGGGGC,+,0.00)
mm_164366.1	chr16	23192110	23192310	+	1	NA	NA	NA	-32530	NM_145933	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.015000	0.442786	65(GGCTTTTAATGA,-,0.00)
mm_52273.1	chr6	108658516	108658716	+	1	NA	NA	NA	-2013	NM_011498	20893	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0.040000	0.562189	
mm_37138.1	chr4	116821394	116821594	-	1	NA	NA	NA	14	NM_146256	242642	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	0.055000	0.616915	
mm_61811.1	chr7	87253267	87253467	+	1	NA	NA	NA	6718	NM_001285833	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	0.005000	0.308458	
mm_102422.1	chr11	59290652	59290852	-	1	NA	NA	NA	-1	NM_009522	22416	Mm.1367	NM_009522	ENSMUSG00000009900	Wnt3a	Wnt-3a|vt	wingless-type MMTV integration site family, member 3A	protein-coding	0.135000	0.810945	
mm_63475.1	chr7	127691854	127692054	+	1	NA	NA	NA	-16533	NR_030428	791073		NR_030428	ENSMUSG00000076454	Mir762	Mirn762|mir-762|mmu-mir-762	microRNA 762	ncRNA	0.010000	0.482587	
mm_105394.1	chr11	103395029	103395229	-	1	NA	NA	NA	17535	NM_183034	353047	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.035000	0.532338	
mm_22078.1	chr2	168764706	168764906	-	1	NA	NA	NA	2395	NM_201395	99377	Mm.434054	NM_175303	ENSMUSG00000027547	Sall4	5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20	sal-like 4 (Drosophila)	protein-coding	0.015000	0.378109	
mm_128662.1	chr15	60141536	60141736	-	1	NA	NA	NA	-125018	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.005000	0.462687	
mm_14717.1	chr2	143915455	143915655	+	1	NA	NA	NA	224	NM_019771	56431	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.100000	0.656716	-39(CCCTTAATAAGC,+,0.00)
mm_64718.1	chr7	4657597	4657797	-	1	NA	NA	NA	1253	NM_172894	243819	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.020000	0.542289	
mm_95433.1	chr11	50210244	50210444	+	1	NA	NA	NA	476	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.075000	0.646766	
mm_133772.1	chr16	94721790	94721990	+	1	NA	NA	NA	110471	NM_001347731	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.025000	0.532338	-77(CCTTATATAGAG,+,0.00)
mm_136345.1	chr16	92620667	92620867	-	1	NA	NA	NA	76562	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.025000	0.507463	
mm_161164.1	chr13	33249508	33249708	+	1	NA	NA	NA	-2	NM_011456	20710	Mm.379809	NM_011456	ENSMUSG00000062342	Serpinb9e	AW540195|NK26|Spi14|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9e	protein-coding	0.010000	0.497512	
mm_74008.1	chr8	121116096	121116296	+	1	NA	NA	NA	25	NM_013519	14234	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	0.070000	0.582090	-12(ATCCCTAAAAGG,-,0.00)
mm_142639.1	chr17	47422484	47422684	-	1	NA	NA	NA	-704	NM_001347584	75462	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.015000	0.487562	
mm_90497.1	chr10	128035247	128035447	+	1	NA	NA	NA	1	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.085000	0.552239	
mm_107465.1	chr12	37241813	37242013	+	1	NA	NA	NA	274	NM_178767	319660	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	0.005000	0.477612	
mm_17158.1	chr2	25234085	25234285	-	1	NA	NA	NA	49	NM_080854	142681	Mm.346652	NM_080854	ENSMUSG00000006469	Slc34a3	AI649385|Npt2c|Npt2c-v1|NptIIc|naPi-2c	solute carrier family 34 (sodium phosphate), member 3	protein-coding	0.015000	0.562189	
mm_34713.1	chr4	152124500	152124700	+	1	NA	NA	NA	4325	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.015000	0.442786	
mm_159532.1	chr4	72145319	72145519	-	1	NA	NA	NA	55474	NM_011599	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.010000	0.432836	
mm_167084.1	chr7	101845247	101845447	-	1	NA	NA	NA	-16	NM_008035	14276	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0.010000	0.472637	
mm_59140.1	chr7	24174947	24175147	+	1	NA	NA	NA	2	NM_001029933	232966	Mm.435485	NM_001029933	ENSMUSG00000068962	Zfp114	Gm1957|Zfp110	zinc finger protein 114	protein-coding	0.040000	0.512438	
mm_70508.1	chr8	12926111	12926311	+	1	NA	NA	NA	10318	NM_178076	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.025000	0.567164	
mm_72575.1	chr8	84189879	84190079	+	1	NA	NA	NA	-11018	NR_029821	723819		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	0.020000	0.517413	-33(CCACATAAAAGC,-,0.00)
mm_151319.1	chr19	55892579	55892779	+	1	NA	NA	NA	-2642	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.025000	0.457711	
mm_93794.1	chr10	120782602	120782802	-	1	NA	NA	NA	16970	NR_038003	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.015000	0.442786	44(GGCTTTAAAAGA,-,0.00),45(GCTTTAAAAGAC,+,0.00)
mm_96909.1	chr11	70459522	70459722	+	1	NA	NA	NA	0	NM_001029929	574428	Mm.472771	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.100000	0.696517	
mm_164339.1	chr16	14211232	14211432	+	1	NA	NA	NA	48057	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.010000	0.567164	
mm_125945.1	chr15	76248397	76248597	+	1	NA	NA	NA	306	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.025000	0.567164	
mm_83928.1	chr9	56635558	56635758	-	1	NA	NA	NA	-10	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.120000	0.776119	
mm_162612.1	chr1	183298231	183298431	-	1	NA	NA	NA	1271	NM_181732	108909	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	0.035000	0.497512	
mm_124117.1	chr14	79482289	79482489	-	1	NA	NA	NA	-1121	NM_018765	22380	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0.030000	0.457711	
mm_39770.1	chr5	30013813	30014013	+	1	NA	NA	NA	799	NM_031168	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.000000	0.398010	
mm_11484.1	chr2	32395573	32395773	+	1	NA	NA	NA	-217	NM_133783	96979	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	0.070000	0.616915	
mm_37593.1	chr4	126533360	126533560	-	1	NA	NA	NA	-2	NM_153177	76850	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	0.170000	0.796020	
mm_71655.1	chr8	60515928	60516128	+	1	NA	NA	NA	9904	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.005000	0.388060	
mm_33126.1	chr4	124804456	124804656	+	1	NA	NA	NA	2007	NM_008636	17764	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	0.000000	0.477612	
mm_40941.1	chr5	76809781	76809981	+	1	NA	NA	NA	-30718	NM_001163793	320827	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.015000	0.527363	
mm_153461.1	chr19	41262425	41262625	-	1	NA	NA	NA	1479	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.010000	0.268657	
mm_25046.1	chr3	98299116	98299316	+	1	NA	NA	NA	18785	NM_008256	15360	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.000000	0.522388	
mm_18209.1	chr2	48935164	48935364	-	1	NA	NA	NA	14003	NM_001177313	26428	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0.010000	0.338308	
mm_89502.1	chr10	94036864	94037064	+	1	NA	NA	NA	963	NM_053072	13998	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	0.005000	0.467662	77(ACCTTTTTAAGG,-,0.00),79(CTTTTTAAGGAA,+,0.00)
mm_79803.1	chr9	64174842	64175042	+	1	NA	NA	NA	-490	NR_028548	100217453		NR_028548	ENSMUSG00000094411	Snord16a	MBII-98	small nucleolar RNA, C/D box 16A	snoRNA	0.030000	0.457711	
mm_96887.1	chr11	70436060	70436260	+	1	NA	NA	NA	-2095	NR_106064	102465670		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.015000	0.562189	
mm_79789.1	chr9	63719174	63719374	+	1	NA	NA	NA	38720	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.010000	0.492537	
mm_105193.1	chr11	102051595	102051795	-	1	NA	NA	NA	10184	NM_001160713	52685	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	0.020000	0.557214	
mm_32310.1	chr4	103313713	103313913	+	1	NA	NA	NA	-33	NM_025909	67013	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	0.090000	0.681592	
mm_2467.1	chr1	105663761	105663961	+	1	NA	NA	NA	0	NM_029349	227446	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	0.065000	0.651741	
mm_35334.1	chr4	30702645	30702845	-	1	NA	NA	NA	38149	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	0.010000	0.462687	
mm_103346.1	chr11	74724595	74724795	-	1	NA	NA	NA	-311	NM_013625	18472	Mm.397111	NM_013625	ENSMUSG00000020745	Pafah1b1	LIS-1|Lis1|MMS10-U|Mdsh|Ms10u|Pafaha	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	protein-coding	0.055000	0.621891	
mm_83354.1	chr9	44375126	44375326	-	1	NA	NA	NA	-4264	NM_021395	12282	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	0.020000	0.507463	
mm_169253.1	chr13	78261602	78261802	+	1	NA	NA	NA	-62829	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.010000	0.462687	
mm_92361.1	chr10	75939883	75940083	-	1	NA	NA	NA	689	NM_001277132	333670	Mm.291320	NM_001037714	ENSMUSG00000050157	Gm867	Gm736	predicted gene 867	protein-coding	0.030000	0.601990	
mm_80015.1	chr9	67858756	67858956	+	1	NA	NA	NA	18460	NM_177184	320528	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.010000	0.358209	
mm_123541.1	chr14	66824327	66824527	-	1	NA	NA	NA	44173	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.035000	0.537313	
mm_100095.1	chr11	115604075	115604275	+	1	NA	NA	NA	24	NM_025305	50529	Mm.193040	NM_025305	ENSMUSG00000046756	Mrps7	MRP-S7|Rpms7	mitchondrial ribosomal protein S7	protein-coding	0.110000	0.711443	
mm_153386.1	chr19	40377655	40377855	-	1	NA	NA	NA	24555	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.035000	0.542289	
mm_140984.1	chr17	24719865	24720065	-	1	NA	NA	NA	0	NR_027900	73474	Mm.443320	NR_027900	ENSMUSG00000090101	Snhg9	1700072N11Rik	small nucleolar RNA host gene 9	ncRNA	0.130000	0.676617	
mm_71958.1	chr8	70527652	70527852	+	1	NA	NA	NA	9	NM_010223	14232	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|Fkbp38	FK506 binding protein 8	protein-coding	0.125000	0.721393	
mm_125241.1	chr15	34306676	34306876	+	1	NA	NA	NA	95	NM_016762	17181	Mm.396856	NM_016762	ENSMUSG00000022324	Matn2	Crtm2|matrilin-2	matrilin 2	protein-coding	0.095000	0.681592	
mm_172528.1	chr7	86089651	86089851	+	1	NA	NA	NA	81973	NM_001102578	546981	Mm.469835	NM_001102578	ENSMUSG00000090436	Vmn2r75	EG546981	vomeronasal 2, receptor 75	protein-coding	0.005000	0.507463	-15(CCCCTTATAAGC,-,0.00),-13(CCTTATAAGCAC,+,0.00)
mm_61975.1	chr7	90540168	90540368	+	1	NA	NA	NA	-64273	NM_026734	68472	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	0.015000	0.507463	75(TGCTCTTAAAGG,-,0.00),76(GCTCTTAAAGGA,+,0.00)
mm_109548.1	chr12	111698545	111698745	+	1	NA	NA	NA	14308	NM_001324481	70369	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.015000	0.567164	
mm_167265.1	chr8	28084700	28084900	+	1	NA	NA	NA	53	NR_033590	666422	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	0.015000	0.552239	
mm_143905.1	chr17	84958393	84958593	-	1	NA	NA	NA	492	NM_001159496	19043	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.155000	0.766169	
mm_130468.1	chr15	98645147	98645347	-	1	NA	NA	NA	10480	NM_001286226	12297	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0.020000	0.393035	
mm_84194.1	chr9	60521979	60522179	-	1	NA	NA	NA	-11044	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.115000	0.776119	
mm_44180.1	chr5	151252408	151252608	+	1	NA	NA	NA	-62315	NM_146258	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.020000	0.567164	
mm_46207.1	chr5	98031357	98031557	-	1	NA	NA	NA	-495	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.045000	0.542289	
mm_17377.1	chr2	27019842	27020042	-	1	NA	NA	NA	8056	NM_172659	227659	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.005000	0.502488	
mm_107923.1	chr12	71069892	71070092	+	1	NA	NA	NA	-41436	NM_029227	75266	Mm.402075	NM_029227	ENSMUSG00000021078	Tomm20l	4930553D19Rik	translocase of outer mitochondrial membrane 20 homolog (yeast)-like	protein-coding	0.060000	0.512438	
mm_168625.1	chr11	79976206	79976406	-	1	NA	NA	NA	-13919	NM_144826	216987	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.000000	0.467662	
mm_143504.1	chr17	71598653	71598853	-	1	NA	NA	NA	8	NR_015549	68789	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	0.095000	0.631841	
mm_124549.1	chr14	122891005	122891205	-	1	NA	NA	NA	22060	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.005000	0.398010	
mm_134036.1	chr16	5049759	5049959	-	1	NA	NA	NA	51	NM_001079814	74022	Mm.21652	NM_028720	ENSMUSG00000022536	Glyr1	2810419J22Rik|3930401K13Rik|AW545332|Npac	glyoxylate reductase 1 homolog (Arabidopsis)	protein-coding	0.115000	0.666667	
mm_72863.1	chr8	88582681	88582881	+	1	NA	NA	NA	53347	NM_027840	71607	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	0.025000	0.567164	
mm_17857.1	chr2	34799619	34799819	-	1	NA	NA	NA	193	NM_145522	227746	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.040000	0.611940	-10(GTCTCTTAAGGC,-,0.00)
mm_102376.1	chr11	58801856	58802056	-	1	NA	NA	NA	4	NM_001162878	75429	Mm.296819	NM_029283	ENSMUSG00000049154	Fam183b	3100002J23Rik|Theg6	family with sequence similarity 183, member B	protein-coding	0.030000	0.552239	
mm_66117.1	chr7	31042273	31042473	-	1	NA	NA	NA	-42	NM_001287217	18301	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	0.015000	0.616915	
mm_94997.1	chr11	31872002	31872202	+	1	NA	NA	NA	1162	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.005000	0.313433	
mm_154568.1	chrX	6577177	6577377	+	1	NA	NA	NA	-9	NM_001313765	208431	Mm.23208	NM_001040459	ENSMUSG00000068270	Shroom4	D430043L16Rik|Gm724|Shrm4	shroom family member 4	protein-coding	0.015000	0.552239	57(CCCTTAAAACGG,+,0.00)
mm_64763.1	chr7	4964249	4964449	-	1	NA	NA	NA	-1	NM_001146329	381836	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	0.030000	0.582090	
mm_81684.1	chr9	111118112	111118312	+	1	NA	NA	NA	101	NM_001164838	71268	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.150000	0.766169	
mm_37392.1	chr4	121097956	121098156	-	1	NA	NA	NA	187	NM_172700	230709	Mm.34399	NM_172700	ENSMUSG00000043207	Zmpste24	A530043O15Rik|D030046F19|FACE1|Face-1|MADB|STE24|Ste24p	zinc metallopeptidase, STE24	protein-coding	0.070000	0.601990	
mm_7663.1	chr1	128417233	128417433	-	1	NA	NA	NA	83	NM_177445	226414	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	0.095000	0.681592	
mm_38519.1	chr4	141415933	141416133	-	1	NA	NA	NA	-45	NM_019701	56365	Mm.24882	NM_019701	ENSMUSG00000006216	Clcnkb	CLCKB|Clc-Ka|Clck2|Clcnk1l	chloride channel, voltage-sensitive Kb	protein-coding	0.000000	0.552239	
mm_167249.1	chr8	24399124	24399324	+	1	NA	NA	NA	39722	NM_026931	69068	Mm.25775	NM_026931	ENSMUSG00000056313	1810011O10Rik	1110065B09Rik|AW121743|AW321058	RIKEN cDNA 1810011O10 gene	protein-coding	0.015000	0.422886	
mm_157696.1	chrX	60446580	60446780	-	1	NA	NA	NA	9515	NM_001039240	631784	Mm.424878	NM_001039240	ENSMUSG00000079583	Gm7073	-	predicted gene 7073	protein-coding	0.000000	0.393035	
mm_50554.1	chr6	49047331	49047531	+	1	NA	NA	NA	10913	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.040000	0.507463	
mm_34723.1	chr4	152177885	152178085	+	1	NA	NA	NA	-115	NM_133348	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.160000	0.781095	
mm_87889.1	chr10	61783162	61783362	+	1	NA	NA	NA	602	NM_207000	404634	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	0.135000	0.761194	
mm_47395.1	chr5	123018874	123019074	-	1	NA	NA	NA	3900	NM_175423	109305	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.005000	0.527363	
mm_110848.1	chr12	73053801	73054001	-	1	NA	NA	NA	-7189	NM_009189	20471	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0.075000	0.666667	
mm_85129.1	chr9	95577614	95577814	-	1	NA	NA	NA	17897	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.020000	0.547264	
mm_10860.1	chr2	25062624	25062824	+	1	NA	NA	NA	2913	NR_106124	102465989		NR_106124	ENSMUSG00000099320	Mir7664	Gm28015|mmu-mir-7664	microRNA 7664	ncRNA	0.005000	0.597015	
mm_93187.1	chr10	93889692	93889892	-	1	NA	NA	NA	1410	NM_019648	56307	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	0.100000	0.671642	
mm_71687.1	chr8	61225751	61225951	+	1	NA	NA	NA	1680	NM_021506	59009	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	0.015000	0.442786	
mm_42897.1	chr5	122405995	122406195	+	1	NA	NA	NA	14217	NM_019824	56378	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.020000	0.388060	
mm_34941.1	chr4	155847330	155847530	+	1	NA	NA	NA	113	NM_010091	13542	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled segment polarity protein 1	protein-coding	0.165000	0.796020	
mm_36947.1	chr4	108848281	108848481	-	1	NA	NA	NA	524	NM_029571	100087	Mm.440007	NM_029571	ENSMUSG00000073775	Kti12	1110001A12Rik|AI326810|AU014758	KTI12 homolog, chromatin associated	protein-coding	0.085000	0.646766	
mm_60265.1	chr7	43825311	43825511	+	1	NA	NA	NA	-39	NM_011177	19144	Mm.3944	NM_011177	ENSMUSG00000050063	Klk6	AI849898|BSP|Bssp|Klk29|MSP|Prss18|Prss9|neurosin	kallikrein related-peptidase 6	protein-coding	0.015000	0.557214	
mm_91759.1	chr10	51480339	51480539	-	1	NA	NA	NA	-173	NM_008147	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.000000	0.402985	
mm_49340.1	chr6	21468499	21468699	+	1	NA	NA	NA	252490	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.005000	0.308458	
mm_43240.1	chr5	130079297	130079497	+	1	NA	NA	NA	27	NM_001130476	22021	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0.130000	0.741294	
mm_17872.1	chr2	34953392	34953592	-	1	NA	NA	NA	8280	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.005000	0.552239	
mm_125343.1	chr15	39112829	39113029	+	1	NA	NA	NA	55	NM_198606	223499	Mm.321937	NM_198606	ENSMUSG00000022300	Dcaf13	Gm83|Wdsof1	DDB1 and CUL4 associated factor 13	protein-coding	0.090000	0.621891	11(CGGTTTAAAGGC,-,0.00)
mm_6961.1	chr1	86110738	86110938	-	1	NA	NA	NA	1132	NM_008311	15559	Mm.439747	NM_008311	ENSMUSG00000026228	Htr2b	5-HT2B|AJ012488|AV377389	5-hydroxytryptamine (serotonin) receptor 2B	protein-coding	0.010000	0.452736	
mm_2110.1	chr1	87853185	87853385	+	1	NA	NA	NA	-2	NM_177646	227333	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0.145000	0.835821	
mm_55193.1	chr6	52191532	52191732	-	1	NA	NA	NA	71	NM_008265	15401	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	0.105000	0.611940	
mm_64972.1	chr7	16675520	16675720	-	1	NA	NA	NA	85	NM_175315	101434	Mm.102767	NM_175315	ENSMUSG00000078795	Ceacam15	AA407838|C430002N04Rik	carcinoembryonic antigen-related cell adhesion molecule 15	protein-coding	0.005000	0.587065	
mm_142911.1	chr17	53463228	53463428	-	1	NA	NA	NA	-7	NM_172497	211482	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	0.040000	0.532338	
mm_144902.1	chr18	37320288	37320488	+	1	NA	NA	NA	7	NM_053130	93876	Mm.196698	NM_053130	ENSMUSG00000063687	Pcdhb5	Pcdhb4A|PcdhbE	protocadherin beta 5	protein-coding	0.035000	0.437811	
mm_120966.1	chr14	77904389	77904589	+	1	NA	NA	NA	250	NM_029495	108670	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.035000	0.626866	
mm_52412.1	chr6	113389177	113389377	+	1	NA	NA	NA	17	NM_001142732	101100	Mm.388573	NM_133923	ENSMUSG00000030276	Ttll3	4833441J24Rik|AI450050	tubulin tyrosine ligase-like family, member 3	protein-coding	0.030000	0.567164	
mm_39079.1	chr4	154334689	154334889	-	1	NA	NA	NA	-34894	NM_001112744	230972	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.055000	0.587065	
mm_81024.1	chr9	104547181	104547381	+	1	NA	NA	NA	-22507	NM_028719	74020	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	0.000000	0.368159	
mm_15150.1	chr2	154000126	154000326	+	1	NA	NA	NA	-8050	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.000000	0.527363	
mm_153160.1	chr19	34492778	34492978	-	1	NA	NA	NA	-17743	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.005000	0.388060	24(CTCTTGAAAAGC,-,0.00)
mm_38220.1	chr4	135973405	135973605	-	1	NA	NA	NA	-911	NM_011942	26394	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	0.015000	0.517413	
mm_150590.1	chr19	40667138	40667338	+	1	NA	NA	NA	7468	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.025000	0.412935	
mm_55942.1	chr6	85069386	85069586	-	1	NA	NA	NA	27	NM_177077	75914	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	0.130000	0.736318	
mm_84283.1	chr9	62819495	62819695	-	1	NA	NA	NA	-7947	NM_010193	14155	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.010000	0.557214	
mm_41643.1	chr5	98031205	98031405	+	1	NA	NA	NA	-343	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.080000	0.601990	
mm_40717.1	chr5	65955542	65955742	+	1	NA	NA	NA	-11482	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.040000	0.472637	
mm_112657.1	chr13	16026744	16026944	+	1	NA	NA	NA	14993	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.040000	0.552239	
mm_29754.1	chr3	127140350	127140550	-	1	NA	NA	NA	-20855	NR_105030	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.005000	0.218905	
mm_144948.1	chr18	37806965	37807165	+	1	NA	NA	NA	655	NM_033581	93706	Mm.247203	NM_033581	ENSMUSG00000102918	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding	0.105000	0.587065	
mm_14585.1	chr2	135929408	135929608	+	1	NA	NA	NA	-128419	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.020000	0.472637	-54(GACTTTTTAAGG,-,0.00),-52(CTTTTTAAGGCT,+,0.00)
mm_153619.1	chr19	43986385	43986585	-	1	NA	NA	NA	35	NM_030703	93721	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	0.035000	0.537313	
mm_57426.1	chr6	124913963	124914163	-	1	NA	NA	NA	-2358	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.015000	0.631841	
mm_55183.1	chr6	52164444	52164644	-	1	NA	NA	NA	287	NM_010451	15399	Mm.131	NM_010451	ENSMUSG00000014704	Hoxa2	AI324701|HOX1.11|Hox-1.11	homeobox A2	protein-coding	0.055000	0.502488	
mm_47668.1	chr5	127281524	127281724	-	1	NA	NA	NA	-1	NR_038128	67351	Mm.320172	NR_038127	ENSMUSG00000087104	Tmem132cos	1700085B03Rik	transmembrane protein 132C, opposite strand	ncRNA	0.025000	0.512438	
mm_92548.1	chr10	79759102	79759302	-	1	NA	NA	NA	4083	NM_023304	67112	Mm.154211	NM_023304	ENSMUSG00000020327	Fgf22	2210414E06Rik|FGF-22	fibroblast growth factor 22	protein-coding	0.035000	0.592040	
mm_74685.1	chr8	14872018	14872218	-	1	NA	NA	NA	-16418	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.000000	0.507463	
mm_51732.1	chr6	87042778	87042978	+	1	NA	NA	NA	32	NM_013528	14583	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	0.135000	0.731343	
mm_94415.1	chr11	5861883	5862083	+	1	NA	NA	NA	117	NM_001291857	11568	Mm.3317	NM_009636	ENSMUSG00000020473	Aebp1	ACLP	AE binding protein 1	protein-coding	0.090000	0.696517	
mm_67848.1	chr7	98656465	98656665	-	1	NA	NA	NA	4	NM_172280	233545	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0.080000	0.606965	61(CCTTTTAGATGA,+,0.00)
mm_106565.1	chr11	120633536	120633736	-	1	NA	NA	NA	-89	NM_010756	17134	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.135000	0.681592	
mm_4539.1	chr1	176814817	176815017	+	1	NA	NA	NA	257	NM_029756	76816	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	0.035000	0.626866	
mm_160060.1	chr7	4836972	4837172	-	1	NA	NA	NA	7624	NM_001290291	232813	Mm.44666	NM_172737	ENSMUSG00000053550	Shisa7	ckamp59	shisa family member 7	protein-coding	0.005000	0.577114	
mm_3038.1	chr1	134040134	134040334	+	1	NA	NA	NA	2719	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.020000	0.582090	
mm_38653.1	chr4	143299183	143299383	-	1	NA	NA	NA	281	NM_010329	14726	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding	0.035000	0.507463	
mm_43675.1	chr5	138793130	138793330	+	1	NA	NA	NA	-26850	NM_001195128	384244	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0.025000	0.517413	
mm_104826.1	chr11	99073847	99074047	-	1	NA	NA	NA	15359	NM_172564	217169	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	0.015000	0.542289	
mm_42737.1	chr5	120649136	120649336	+	1	NA	NA	NA	48	NM_001281999	19415	Mm.41209	NM_013832	ENSMUSG00000029602	Rasal1	MRASAL	RAS protein activator like 1 (GAP1 like)	protein-coding	0.085000	0.731343	
mm_59575.1	chr7	28117288	28117488	+	1	NA	NA	NA	-12078	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.562189	
mm_149243.1	chr19	10204086	10204286	+	1	NA	NA	NA	-16	NM_026919	69038	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	0.060000	0.557214	
mm_109522.1	chr12	111535556	111535756	+	1	NA	NA	NA	-2445	NM_178041	217869	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.005000	0.482587	
mm_22862.1	chr3	28727891	28728091	+	1	NA	NA	NA	30088	NM_031197	20526	Mm.18443	NM_031197	ENSMUSG00000027690	Slc2a2	AI266973|Glut-2|Glut2	solute carrier family 2 (facilitated glucose transporter), member 2	protein-coding	0.015000	0.383085	58(TTTTTTATAGCT,+,0.00)
mm_149685.1	chr19	20492914	20493114	+	1	NA	NA	NA	299	NR_015502	320092	Mm.482524	NR_015502		E030003E18Rik	1700127G21Rik	RIKEN cDNA E030003E18 gene	ncRNA	0.010000	0.487562	
mm_65587.1	chr7	27310601	27310801	-	1	NA	NA	NA	22947	NM_001113549	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.050000	0.621891	
mm_21351.1	chr2	157120419	157120619	-	1	NA	NA	NA	14703	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.015000	0.323383	
mm_72640.1	chr8	84701666	84701866	+	1	NA	NA	NA	309	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.060000	0.676617	
mm_74360.1	chr8	128358975	128359175	+	1	NA	NA	NA	2	NM_008737	18186	Mm.271745	NM_008737	ENSMUSG00000025810	Nrp1	C530029I03|NP-1|NPN-1|Npn1|Nrp	neuropilin 1	protein-coding	0.050000	0.606965	
mm_169874.1	chr16	37654274	37654474	-	1	NA	NA	NA	-6	NM_026610	68194	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.085000	0.646766	
mm_89326.1	chr10	87931480	87931680	+	1	NA	NA	NA	-35091	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.283582	-1(CCATATAGAGCA,+,0.00)
mm_13217.1	chr2	96317979	96318179	+	1	NA	NA	NA	-90	NM_001289742	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.015000	0.497512	
mm_53449.1	chr6	134451043	134451243	+	1	NA	NA	NA	54814	NM_025778	66813	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.035000	0.522388	
mm_135821.1	chr16	58499240	58499440	-	1	NA	NA	NA	23972	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.000000	0.432836	
mm_110288.1	chr12	32123634	32123834	-	1	NA	NA	NA	-62455	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.020000	0.517413	
mm_76364.1	chr8	84773710	84773910	-	1	NA	NA	NA	559	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.030000	0.467662	
mm_21820.1	chr2	165286823	165287023	-	1	NA	NA	NA	864	NM_001252574	228875	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.015000	0.537313	
mm_27465.1	chr3	52390796	52390996	-	1	NA	NA	NA	122559	NM_019739	56458	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.005000	0.532338	
mm_53634.1	chr6	140591553	140591753	+	1	NA	NA	NA	-31010	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.015000	0.542289	
mm_138012.1	chr17	33905009	33905209	+	1	NA	NA	NA	-26	NR_040470	474160	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	0.015000	0.572139	
mm_13852.1	chr2	119650314	119650514	+	1	NA	NA	NA	12384	NM_027175	69702	Mm.5390	NM_027175	ENSMUSG00000027305	Ndufaf1	2410001M24Rik|CGI-65|CIA30	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1	protein-coding	0.005000	0.398010	
mm_65434.1	chr7	25368982	25369182	-	1	NA	NA	NA	642	NM_001081375	72383	Mm.34382	NM_028219	ENSMUSG00000063651	Cnfn	2210418J09Rik	cornifelin	protein-coding	0.035000	0.582090	
mm_52189.1	chr6	99692202	99692402	+	1	NA	NA	NA	-377	NM_008158	14761	Mm.35009	NM_008158	ENSMUSG00000072875	Gpr27	-	G protein-coupled receptor 27	protein-coding	0.170000	0.830846	
mm_15848.1	chr2	164771771	164771971	+	1	NA	NA	NA	1942	NM_026785	68612	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	0.025000	0.567164	
mm_44561.1	chr5	24622550	24622750	-	1	NA	NA	NA	-20648	NM_025891	66993	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.000000	0.611940	
mm_67274.1	chr7	76237481	76237681	-	1	NA	NA	NA	7694	NM_001199224	244071	Mm.322829	NM_172902	ENSMUSG00000025754	Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding	0.015000	0.407960	
mm_20634.1	chr2	132007367	132007567	-	1	NA	NA	NA	22521	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.045000	0.601990	
mm_202.1	chr1	16105763	16105963	+	1	NA	NA	NA	-19	NM_133832	98711	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.125000	0.761194	
mm_27545.1	chr3	57842544	57842744	-	1	NA	NA	NA	5113	NM_019410	18645	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	0.015000	0.437811	
mm_10200.1	chr2	4935037	4935237	+	1	NA	NA	NA	16141	NM_010726	16922	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.010000	0.492537	
mm_95168.1	chr11	40733571	40733771	+	1	NA	NA	NA	10	NM_001290697	52653	Mm.276504	NM_026023	ENSMUSG00000020328	Nudcd2	-	NudC domain containing 2	protein-coding	0.070000	0.517413	
mm_123515.1	chr14	66274648	66274848	-	1	NA	NA	NA	6304	NM_172498	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.015000	0.502488	
mm_40233.1	chr5	37291274	37291474	+	1	NA	NA	NA	45507	NM_021292	59056	Mm.479678	NM_021292	ENSMUSG00000029122	Evc	-	Ellis van Creveld gene syndrome	protein-coding	0.030000	0.522388	
mm_18551.1	chr2	65090340	65090540	-	1	NA	NA	NA	-67674	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0.000000	0.348259	
mm_35551.1	chr4	41508866	41509066	-	1	NA	NA	NA	-1202	NM_001253778	73721	Mm.45614	NM_028624	ENSMUSG00000028441	1110017D15Rik	Cbe1|Smrp1	RIKEN cDNA 1110017D15 gene	protein-coding	0.000000	0.442786	
mm_90439.1	chr10	127643018	127643218	+	1	NA	NA	NA	132	NM_009284	20852	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.065000	0.592040	31(GTTTTTAGGGCC,+,0.00)
mm_77226.1	chr8	115703657	115703857	-	1	NA	NA	NA	3137	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.010000	0.288557	
mm_172397.1	chr7	141447570	141447770	+	1	NA	NA	NA	20	NM_026020	67186	Mm.380435	NM_026020	ENSMUSG00000025508	Rplp2	2700049I22Rik	ribosomal protein, large P2	protein-coding	0.145000	0.731343	
mm_46553.1	chr5	106624314	106624514	-	1	NA	NA	NA	72416	NM_026856	52397	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.010000	0.412935	
mm_7246.1	chr1	93635602	93635802	-	1	NA	NA	NA	25	NM_021537	59041	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.095000	0.661692	
mm_83171.1	chr9	40531276	40531476	-	1	NA	NA	NA	-75612	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.100000	0.666667	
mm_71823.1	chr8	68895720	68895920	+	1	NA	NA	NA	15265	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.020000	0.467662	
mm_19816.1	chr2	110363043	110363243	-	1	NA	NA	NA	-150	NM_026271	67606	Mm.291809	NM_026271	ENSMUSG00000074971	Fibin	1110018M03Rik	fin bud initiation factor homolog (zebrafish)	protein-coding	0.025000	0.542289	
mm_80500.1	chr9	78520629	78520829	+	1	NA	NA	NA	-39005	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.030000	0.527363	
mm_156419.1	chrX	140907456	140907656	+	1	NA	NA	NA	-52	NM_030181	78789	Mm.244932	NM_026103	ENSMUSG00000031430	Vsig1	1700062D20Rik|4930405J24Rik	V-set and immunoglobulin domain containing 1	protein-coding	0.020000	0.497512	
mm_144636.1	chr18	32961214	32961414	+	1	NA	NA	NA	22273	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.010000	0.417910	
mm_90520.1	chr10	128058944	128059144	+	1	NA	NA	NA	62	NM_019766	56351	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3 (cytosolic)	protein-coding	0.150000	0.716418	
mm_137978.1	chr17	33584196	33584396	+	1	NA	NA	NA	28589	NM_053214	17916	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0.005000	0.537313	
mm_170090.1	chr17	35969565	35969765	-	1	NA	NA	NA	85	NM_013854	224742	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	0.135000	0.741294	
mm_3766.1	chr1	156303387	156303587	+	1	NA	NA	NA	119	NM_001277730	214575	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	0.155000	0.746269	
mm_39545.1	chr5	21543528	21543728	+	1	NA	NA	NA	101	NM_028977	74511	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0.030000	0.552239	
mm_125455.1	chr15	52040054	52040254	+	1	NA	NA	NA	47	NM_175503	239435	Mm.24204	NM_175503	ENSMUSG00000068522	Aard	A5D3|AV328152	alanine and arginine rich domain containing protein	protein-coding	0.055000	0.601990	-34(GGCCTTAAAAAG,-,0.00),-32(CCTTAAAAAGCT,+,0.00)
mm_73221.1	chr8	99663841	99664041	+	1	NA	NA	NA	247267	NR_132435	234624	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	0.000000	0.552239	
mm_80567.1	chr9	83866466	83866666	+	1	NA	NA	NA	31877	NM_001284272	22137	Mm.1904	NM_009445	ENSMUSG00000038379	Ttk	AL022661|Esk1|Mps1|PYT|esk	Ttk protein kinase	protein-coding	0.005000	0.243781	-3(ACTTTTAAGGTC,+,0.00)
mm_78881.1	chr9	44522051	44522251	+	1	NA	NA	NA	4270	NM_007551	12145	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	0.015000	0.492537	
mm_43661.1	chr5	138754323	138754523	+	1	NA	NA	NA	-658	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.090000	0.651741	
mm_99537.1	chr11	103193037	103193237	+	1	NA	NA	NA	15411	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.080000	0.616915	
mm_112273.1	chr12	114254001	114254201	-	1	NA	NA	NA	215365	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.005000	0.447761	
mm_35630.1	chr4	43492958	43493158	-	1	NA	NA	NA	1	NR_001460	19782		NR_001460	ENSMUSG00000088088	Rmrp	1110032O22Rik|Rmrpr	RNA component of mitochondrial RNAase P	ncRNA	0.045000	0.487562	
mm_87013.1	chr10	26891978	26892178	+	1	NA	NA	NA	119566	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.005000	0.407960	
mm_160536.1	chr9	39873376	39873576	+	1	NA	NA	NA	199	NM_146610	258603	Mm.271456	NM_146610	ENSMUSG00000094449	Olfr972	MOR171-17	olfactory receptor 972	protein-coding	0.000000	0.422886	
mm_76463.1	chr8	85365247	85365447	-	1	NA	NA	NA	-23	NM_175441	213435	Mm.32804	NM_175441	ENSMUSG00000031698	Mylk3	D830007F02Rik|MLCK	myosin light chain kinase 3	protein-coding	0.015000	0.577114	
mm_19165.1	chr2	84331414	84331614	-	1	NA	NA	NA	93752	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.010000	0.278607	
mm_125579.1	chr15	59469291	59469491	+	1	NA	NA	NA	95193	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.000000	0.358209	
mm_7344.1	chr1	105989977	105990177	-	1	NA	NA	NA	-329	NM_001122676	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.085000	0.631841	
mm_30856.1	chr4	28813063	28813263	+	1	NA	NA	NA	18	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.070000	0.616915	
mm_145319.1	chr18	54611694	54611894	+	1	NA	NA	NA	50	NR_045400	328957	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	0.010000	0.452736	
mm_17612.1	chr2	30927955	30928155	-	1	NA	NA	NA	-24758	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.020000	0.552239	
mm_135623.1	chr16	52273868	52274068	-	1	NA	NA	NA	179113	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.020000	0.402985	
mm_30935.1	chr4	32983323	32983523	+	1	NA	NA	NA	425	NM_027491	52187	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	0.100000	0.751244	
mm_15748.1	chr2	164237500	164237700	+	1	NA	NA	NA	741	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.447761	
mm_31460.1	chr4	49059193	49059393	+	1	NA	NA	NA	-169	NM_178756	272031	Mm.299460	NM_178756	ENSMUSG00000063446	Plppr1	E130309F12Rik|Lppr1|PRG-3|mKIAA4247	phospholipid phosphatase related 1	protein-coding	0.065000	0.636816	
mm_36893.1	chr4	107680761	107680961	-	1	NA	NA	NA	3301	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.020000	0.507463	
mm_158629.1	chrX	153037418	153037618	-	1	NA	NA	NA	45	NM_023788	75625	Mm.6890	NM_023788	ENSMUSG00000047238	Mageh1	2010107K23Rik|APR-1|APR1	melanoma antigen, family H, 1	protein-coding	0.080000	0.641791	
mm_62280.1	chr7	99603799	99603999	+	1	NA	NA	NA	23204	NM_001195529	100503386	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	0.010000	0.487562	
mm_51229.1	chr6	71373504	71373704	+	1	NA	NA	NA	177	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.040000	0.562189	
mm_54919.1	chr6	47803749	47803949	-	1	NA	NA	NA	-197	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.025000	0.512438	
mm_148721.1	chr19	5846678	5846878	+	1	NA	NA	NA	-1298	NR_003513	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.030000	0.577114	
mm_69453.1	chr7	133122100	133122300	-	1	NA	NA	NA	1283	NM_009980	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.130000	0.736318	
mm_23175.1	chr3	40784042	40784242	+	1	NA	NA	NA	-15809	NM_173169	20873	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo-like kinase 4	protein-coding	0.010000	0.368159	
mm_1643.1	chr1	74588219	74588419	+	1	NA	NA	NA	30	NM_025784	66821	Mm.358700	NM_025784	ENSMUSG00000026172	Bcs1l	9130022O19Rik	BCS1-like (yeast)	protein-coding	0.075000	0.631841	
mm_93837.1	chr10	121603256	121603456	-	1	NA	NA	NA	-16562	NM_019786	56480	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.020000	0.497512	
mm_71354.1	chr8	45658231	45658431	+	1	NA	NA	NA	-3662	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.005000	0.417910	
mm_29119.1	chr3	105052467	105052667	-	1	NA	NA	NA	386	NM_001163333	80281	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.020000	0.542289	
mm_130763.1	chr15	101364479	101364679	-	1	NA	NA	NA	-4773	NR_035462	100316694		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0.020000	0.572139	
mm_3524.1	chr1	150108714	150108914	+	1	NA	NA	NA	8783	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.427861	
mm_9320.1	chr1	171648907	171649107	-	1	NA	NA	NA	-8	NM_001347184	75345	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	0.030000	0.412935	
mm_10362.1	chr2	11705296	11705496	+	1	NA	NA	NA	103	NM_001271497	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.035000	0.552239	
mm_131513.1	chr16	17508877	17509077	+	1	NA	NA	NA	-235	NM_001331226	66863	Mm.161726	NM_025808	ENSMUSG00000022761	Lztr1	1200003E21Rik|AI591627|AW550890	leucine-zipper-like transcriptional regulator, 1	protein-coding	0.070000	0.671642	
mm_130298.1	chr15	97019376	97019576	-	1	NA	NA	NA	36480	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.025000	0.512438	
mm_67961.1	chr7	100539221	100539421	-	1	NA	NA	NA	2221	NM_183270	68185	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	0.020000	0.557214	
mm_42791.1	chr5	121567615	121567815	+	1	NA	NA	NA	-21823	NM_010765	17165	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	0.035000	0.497512	
mm_168777.1	chr12	17548456	17548656	+	1	NA	NA	NA	3683	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.020000	0.487562	
mm_85725.1	chr9	108339785	108339985	-	1	NA	NA	NA	805	NM_001329528	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.050000	0.522388	
mm_21178.1	chr2	154892791	154892991	-	1	NA	NA	NA	15	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.095000	0.597015	
mm_165159.1	chr2	24819117	24819317	-	1	NA	NA	NA	-56065	NM_007579	12287	Mm.4424	NM_007579	ENSMUSG00000004113	Cacna1b	AW050276|AW060892|AW822256|BIII|Cav2.2|Cchn1a|alpha(1B)	calcium channel, voltage-dependent, N type, alpha 1B subunit	protein-coding	0.000000	0.248756	
mm_28355.1	chr3	89732221	89732421	-	1	NA	NA	NA	1603	NM_019655	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.020000	0.472637	
mm_27017.1	chr3	26027265	26027465	-	1	NA	NA	NA	125942	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.412935	
mm_44803.1	chr5	33218091	33218291	-	1	NA	NA	NA	47	NM_133903	100689	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	0.020000	0.582090	
mm_16703.1	chr2	7012552	7012752	-	1	NA	NA	NA	68650	NM_001110230	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.000000	0.383085	-59(CCTCTAATACCC,+,0.00)
mm_148645.1	chr19	5490419	5490619	+	1	NA	NA	NA	64	NM_007687	12631	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.105000	0.646766	
mm_137120.1	chr17	22674218	22674418	+	1	NA	NA	NA	73170	NM_001104575	628185	Mm.390947	NM_001104575	ENSMUSG00000094921	Vmn2r112	EG628185|V2rp1	vomeronasal 2, receptor 112	protein-coding	0.030000	0.532338	
mm_127237.1	chr15	99457858	99458058	+	1	NA	NA	NA	-210	NM_001001884	380969	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	0.085000	0.706468	
mm_85928.1	chr9	112077832	112078032	-	1	NA	NA	NA	40779	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.000000	0.348259	
mm_172647.1	chr8	26587186	26587386	-	1	NA	NA	NA	237137	NR_045904	72316	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.055000	0.651741	
mm_162833.1	chr10	82178235	82178435	+	1	NA	NA	NA	50322	NM_001163064	216177	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding	0.065000	0.597015	
mm_170292.1	chr18	3005339	3005539	+	1	NA	NA	NA	117973	NM_001167539	100312476	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.015000	0.363184	9(CCATTTAAAAGC,+,0.00),9(CCATTTAAAAGC,-,0.00)
mm_51328.1	chr6	72355655	72355855	+	1	NA	NA	NA	272	NM_144916	232086	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	0.090000	0.666667	
mm_165912.1	chr4	57845171	57845371	+	1	NA	NA	NA	23	NM_001035532	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.040000	0.572139	
mm_30632.1	chr4	8803334	8803534	+	1	NA	NA	NA	113028	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.005000	0.417910	74(ATCTTTATAAAG,-,0.00),76(CTTTATAAAGCA,+,0.00)
mm_103628.1	chr11	78935318	78935518	-	1	NA	NA	NA	10127	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.527363	
mm_13648.1	chr2	114054249	114054449	+	1	NA	NA	NA	-47	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.005000	0.567164	
mm_101273.1	chr11	21370570	21370770	-	1	NA	NA	NA	-41	NM_139297	216558	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0.120000	0.726368	-46(GGCTATTTATGG,-,0.00),-44(CTATTTATGGGC,+,0.00)
mm_70676.1	chr8	14961790	14961990	+	1	NA	NA	NA	-49135	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.005000	0.512438	
mm_36770.1	chr4	102569022	102569222	-	1	NA	NA	NA	-938	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.015000	0.457711	
mm_42714.1	chr5	120440498	120440698	+	1	NA	NA	NA	8712	NM_008499	16873	Mm.5151	NM_008499	ENSMUSG00000029595	Lhx5	Lim2	LIM homeobox protein 5	protein-coding	0.025000	0.502488	
mm_93333.1	chr10	99461658	99461858	-	1	NA	NA	NA	-147413	NR_038019	100504202	Mm.403801	NR_038019		Gm20110	-	predicted gene, 20110	ncRNA	0.030000	0.517413	
mm_28149.1	chr3	87512543	87512743	-	1	NA	NA	NA	-12935	NM_001083318	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.025000	0.592040	
mm_92087.1	chr10	62808270	62808470	-	1	NA	NA	NA	-16002	NM_026201	67500	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	0.005000	0.353234	
mm_154561.1	chrX	5984590	5984790	+	1	NA	NA	NA	-62817	NM_021431	58242	Mm.41198	NM_021431	ENSMUSG00000073295	Nudt11	DIPP3|DIPP3b	nudix (nucleoside diphosphate linked moiety X)-type motif 11	protein-coding	0.020000	0.467662	
mm_147385.1	chr18	43737461	43737661	-	1	NA	NA	NA	-324	NM_009258	20730	Mm.272	NM_009258	ENSMUSG00000024503	Spink1	Spink3|p12	serine peptidase inhibitor, Kazal type 1	protein-coding	0.005000	0.472637	
mm_139963.1	chr17	71657436	71657636	+	1	NA	NA	NA	-15725	NM_177087	320159	Mm.187372	NM_177087	ENSMUSG00000045761	Fam179a	4632412N22Rik	family with sequence similarity 179, member A	protein-coding	0.015000	0.407960	
mm_112344.1	chr12	116485508	116485708	-	1	NA	NA	NA	-112	NM_011215	19276	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	0.075000	0.651741	
mm_127183.1	chr15	98989909	98990109	+	1	NA	NA	NA	4044	NR_045991	75951	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.010000	0.512438	
mm_52532.1	chr6	115852917	115853117	+	1	NA	NA	NA	324	NM_010774	17193	Mm.259308	NM_010774	ENSMUSG00000030322	Mbd4	Med1	methyl-CpG binding domain protein 4	protein-coding	0.030000	0.567164	
mm_31725.1	chr4	62699579	62699779	+	1	NA	NA	NA	25705	NM_001310706	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.035000	0.621891	
mm_153527.1	chr19	41801944	41802144	-	1	NA	NA	NA	40	NM_001163495	71085	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	0.075000	0.626866	
mm_153808.1	chr19	46045213	46045413	-	1	NA	NA	NA	-102	NM_001113408	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.135000	0.666667	
mm_65350.1	chr7	24997144	24997344	-	1	NA	NA	NA	8693	NM_001290469	232975	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.045000	0.587065	
mm_44560.1	chr5	24606260	24606460	-	1	NA	NA	NA	-4358	NM_025891	66993	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.045000	0.587065	
mm_45938.1	chr5	90228889	90229089	-	1	NA	NA	NA	-4993	NM_001163456	231430	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	0.010000	0.323383	
mm_142177.1	chr17	36270996	36271196	-	1	NA	NA	NA	337	NM_178281	79263	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0.105000	0.661692	
mm_115500.1	chr13	3910394	3910594	-	1	NA	NA	NA	7726	NM_019671	56349	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0.015000	0.467662	-34(AACTATAAAAAG,-,0.00)
mm_122789.1	chr14	54417537	54417737	-	1	NA	NA	NA	42	NM_001253679	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.055000	0.621891	
mm_56345.1	chr6	92917976	92918176	-	1	NA	NA	NA	-16635	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	0.010000	0.447761	
mm_86513.1	chr10	7667432	7667632	+	1	NA	NA	NA	28	NM_145706	69912	Mm.299887	NM_145706	ENSMUSG00000040034	Nup43	2610016K01Rik|2610529I12Rik|AA409950|p42	nucleoporin 43	protein-coding	0.050000	0.552239	
mm_119876.1	chr14	54814050	54814250	+	1	NA	NA	NA	-32264	NM_016972	50934	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	0.090000	0.681592	
mm_125063.1	chr15	25940889	25941089	+	1	NA	NA	NA	163	NM_025459	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.035000	0.547264	
mm_100741.1	chr11	4116628	4116828	-	1	NA	NA	NA	2001	NM_144520	67815	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	0.030000	0.597015	
mm_103919.1	chr11	83590535	83590735	-	1	NA	NA	NA	2452	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.000000	0.417910	
mm_101016.1	chr11	8558880	8559080	-	1	NA	NA	NA	105555	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.005000	0.517413	-35(GGCCTTTTAAAG,-,0.00),-34(GCCTTTTAAAGT,-,0.00),-33(CCTTTTAAAGTC,+,0.00)
mm_27047.1	chr3	27193977	27194177	-	1	NA	NA	NA	11073	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.025000	0.537313	
mm_13478.1	chr2	106003234	106003434	+	1	NA	NA	NA	215	NM_026992	99349	Mm.25661	NM_026992	ENSMUSG00000027166	Dnajc24	1700030A21Rik|2610027M02Rik|AV066965|AW240712|Dph4|MmDjC7|Zcsl3	DnaJ heat shock protein family (Hsp40) member C24	protein-coding	0.090000	0.572139	
mm_142213.1	chr17	37023236	37023436	-	1	NA	NA	NA	62	NM_010814	17441	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	0.015000	0.552239	
mm_119840.1	chr14	54431535	54431735	+	1	NA	NA	NA	37	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.040000	0.542289	
mm_171081.1	chr3	121426443	121426643	+	1	NA	NA	NA	2	NM_028044	71994	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0.120000	0.741294	
mm_160777.1	chr10	126995505	126995705	+	1	NA	NA	NA	-8	NM_146012	52468	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0.025000	0.552239	
mm_104930.1	chr11	100041454	100041654	-	1	NA	NA	NA	0	NM_027563	16672	Mm.289644	NM_027563	ENSMUSG00000043485	Krt34	4733401E01Rik|Ha2|K34|Krt1-4	keratin 34	protein-coding	0.020000	0.522388	-34(GGGTATAAAAAG,-,0.00)
mm_80798.1	chr9	96258697	96258897	+	1	NA	NA	NA	92	NM_001184709	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.015000	0.462687	
mm_99264.1	chr11	101246248	101246448	+	1	NA	NA	NA	14	NM_019444	54409	Mm.260698	NM_019444	ENSMUSG00000001240	Ramp2	-	receptor (calcitonin) activity modifying protein 2	protein-coding	0.115000	0.776119	
mm_71387.1	chr8	46010516	46010716	+	1	NA	NA	NA	14	NM_026278	67620	Mm.383914	NM_026278	ENSMUSG00000031637	Lrp2bp	1700113N17Rik|2310006J04Rik|4930479L12Rik|MegBP	Lrp2 binding protein	protein-coding	0.005000	0.447761	
mm_149608.1	chr19	16384763	16384963	+	1	NA	NA	NA	-50804	NM_008137	14675	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.035000	0.472637	
mm_141451.1	chr17	30229066	30229266	-	1	NA	NA	NA	27369	NR_105839	102465223		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0.020000	0.517413	
mm_27635.1	chr3	61415898	61416098	-	1	NA	NA	NA	51491	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.000000	0.368159	
mm_154362.1	chrM	6914	7114	+	1	NA	NA	NA	NA	NA									0.005000	0.288557	-7(TCTTATATGGCC,+,0.00)
mm_88788.1	chr10	80614864	80615064	+	1	NA	NA	NA	5704	NR_105877	102465550		NR_105877	ENSMUSG00000099283	Mir6912	Gm27990|mmu-mir-6912	microRNA 6912	ncRNA	0.005000	0.557214	
mm_86387.1	chr9	123937977	123938177	-	1	NA	NA	NA	30615	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.005000	0.378109	
mm_43747.1	chr5	140388155	140388355	+	1	NA	NA	NA	1053	NM_172277	231834	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.005000	0.517413	
mm_30983.1	chr4	34893664	34893864	+	1	NA	NA	NA	-15	NM_009889	12640	Mm.1361	NM_009889	ENSMUSG00000028298	Cga	CG-alpha|FSHA|GPHA1|GPHalpha|HCG|LHA|Tsha|aGSU|alpha-GSU|alphaGSU|alphaSU	glycoprotein hormones, alpha subunit	protein-coding	0.005000	0.452736	-18(TGGTATAAAAGA,-,0.00)
mm_108373.1	chr12	80833773	80833973	+	1	NA	NA	NA	43341	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.005000	0.417910	-33(GACTATAAAAAG,-,0.00)
mm_62898.1	chr7	116504280	116504480	+	1	NA	NA	NA	11	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.080000	0.656716	
mm_50026.1	chr6	41121458	41121658	+	1	NA	NA	NA	-86049	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.442786	-29(CTTTTTATAGAA,+,0.00)
mm_14746.1	chr2	144527421	144527621	+	1	NA	NA	NA	-123	NM_172859	241688	Mm.442156	NM_172859	ENSMUSG00000037259	Dzank1	2810039F03Rik|6330439K17Rik|6430408C01|AI851115|Ankrd64	double zinc ribbon and ankyrin repeat domains 1	protein-coding	0.055000	0.597015	
mm_134568.1	chr16	20362127	20362327	-	1	NA	NA	NA	-36823	NM_183158	224044	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.035000	0.502488	
mm_18916.1	chr2	76737153	76737353	-	1	NA	NA	NA	61938	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.015000	0.457711	
mm_21926.1	chr2	166996113	166996313	-	1	NA	NA	NA	86	NM_011490	20853	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen (RNA binding protein) homolog 1 (Drosophila)	protein-coding	0.120000	0.746269	
mm_92122.1	chr10	63382669	63382869	-	1	NA	NA	NA	326	NM_001253685	30045	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.055000	0.532338	
mm_73595.1	chr8	109998256	109998456	+	1	NA	NA	NA	7920	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.020000	0.522388	
mm_120689.1	chr14	70774318	70774518	+	1	NA	NA	NA	37	NM_010071	13449	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip	docking protein 2	protein-coding	0.005000	0.522388	
mm_29375.1	chr3	108722169	108722369	-	1	NA	NA	NA	30	NM_029522	76123	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0.095000	0.711443	
mm_78727.1	chr9	41580856	41581056	+	1	NA	NA	NA	-297	NR_015483	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.030000	0.567164	
mm_169181.1	chr13	65817595	65817795	-	1	NA	NA	NA	-295758	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.025000	0.532338	
mm_160778.1	chr10	127060211	127060411	-	1	NA	NA	NA	-127	NM_001033262	216438	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	0.105000	0.796020	
mm_114809.1	chr13	91484448	91484648	+	1	NA	NA	NA	23451	NM_024186	66970	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.005000	0.417910	
mm_80801.1	chr9	96259154	96259354	+	1	NA	NA	NA	6	NM_001184710	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.015000	0.402985	
mm_30479.1	chr3	154847253	154847453	-	1	NA	NA	NA	136220	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.015000	0.432836	59(CCCTTTTAAAGC,-,0.00),60(CCTTTTAAAGCA,+,0.00),61(CTTTTAAAGCAC,+,0.00)
mm_62466.1	chr7	101663631	101663831	+	1	NA	NA	NA	-37	NM_009191	20480	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	0.075000	0.572139	-15(CACCTTATAAGC,-,0.00),-13(CCTTATAAGCGG,+,0.00)
mm_134300.1	chr16	15594388	15594588	-	1	NA	NA	NA	30	NM_001159351	70620	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	0.115000	0.666667	
mm_124797.1	chr15	8443521	8443721	+	1	NA	NA	NA	842	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.040000	0.507463	
mm_157074.1	chrX	8252267	8252467	-	1	NA	NA	NA	39	NM_133991	54632	Mm.327529	NM_133991	ENSMUSG00000031171	Ftsj1	AI931847|Ftsj|Ftsjl|Sfc12	FtsJ RNA methyltransferase homolog 1 (E. coli)	protein-coding	0.070000	0.502488	
mm_53812.1	chr6	147032438	147032638	+	1	NA	NA	NA	1	NM_025620	66532	Mm.45888	NM_025620	ENSMUSG00000040121	Rep15	2210417D09Rik	RAB15 effector protein	protein-coding	0.015000	0.492537	-35(GGGTCTATATGG,-,0.00)
mm_5656.1	chr1	42498433	42498633	-	1	NA	NA	NA	196292	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.015000	0.422886	
mm_34883.1	chr4	155582667	155582867	+	1	NA	NA	NA	-18649	NM_177186	320541	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	0.025000	0.646766	
mm_129290.1	chr15	77203195	77203395	-	1	NA	NA	NA	-49483	NM_001286418	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.025000	0.567164	-34(GCACATATAAGG,-,0.00)
mm_11862.1	chr2	48815248	48815448	+	1	NA	NA	NA	1239	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.015000	0.442786	
mm_124940.1	chr15	12321343	12321543	+	1	NA	NA	NA	-53	NM_025673	66629	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.145000	0.776119	
mm_122486.1	chr14	46388279	46388479	-	1	NA	NA	NA	2290	NM_001316360	12159	Mm.6813	NM_007554	ENSMUSG00000021835	Bmp4	Bmp-4|Bmp2b|Bmp2b-1|Bmp2b1	bone morphogenetic protein 4	protein-coding	0.065000	0.601990	-26(TGGTTTAAAAAG,-,0.00)
mm_73303.1	chr8	105131778	105131978	+	1	NA	NA	NA	78	NM_146213	234677	Mm.120297	NM_146213	ENSMUSG00000060560	Ces4a	Ces8	carboxylesterase 4A	protein-coding	0.015000	0.562189	
mm_36416.1	chr4	78211674	78211874	-	1	NA	NA	NA	121	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.145000	0.736318	1(CACTTTTAAAGA,-,0.00),2(ACTTTTAAAGAA,+,0.00)
mm_240.1	chr1	19208946	19209146	+	1	NA	NA	NA	132	NM_001286340	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.035000	0.457711	
mm_150486.1	chr19	39006819	39007019	+	1	NA	NA	NA	-100	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.000000	0.462687	68(CATTATAAAAGC,-,0.00)
mm_110263.1	chr12	31928699	31928899	-	1	NA	NA	NA	21736	NM_177993	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.005000	0.343284	
mm_47821.1	chr5	134232160	134232360	-	1	NA	NA	NA	-2635	NR_104383	17969	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.005000	0.522388	
mm_32545.1	chr4	109342996	109343196	+	1	NA	NA	NA	40	NM_001159964	13858	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0.005000	0.298507	
mm_22165.1	chr2	173023270	173023470	-	1	NA	NA	NA	1468	NM_019547	56190	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.010000	0.577114	
mm_132090.1	chr16	31066929	31067129	+	1	NA	NA	NA	14403	NM_198626	268880	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.020000	0.522388	-37(CTGCATAAAGGG,-,0.00)
mm_11390.1	chr2	31449795	31449995	+	1	NA	NA	NA	-20375	NM_007494	11898	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.010000	0.477612	
mm_118150.1	chr13	105242559	105242759	-	1	NA	NA	NA	50355	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.000000	0.358209	
mm_67719.1	chr7	90046282	90046482	-	1	NA	NA	NA	17223	NR_110364	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	0.010000	0.507463	
mm_67721.1	chr7	90046938	90047138	-	1	NA	NA	NA	17879	NR_110364	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	0.005000	0.407960	36(CTCTTTATGGTG,+,0.00)
mm_64692.1	chr7	4522706	4522906	-	1	NA	NA	NA	-363	NM_009406	21954	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0.020000	0.537313	
mm_117795.1	chr13	97198212	97198412	-	1	NA	NA	NA	45	NM_010422	15212	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.085000	0.671642	
mm_59425.1	chr7	27124802	27125002	+	1	NA	NA	NA	4947	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.035000	0.522388	
mm_88355.1	chr10	75935764	75935964	+	1	NA	NA	NA	291	NM_175329	103172	Mm.333849	NM_175329	ENSMUSG00000049422	Chchd10	1620401E04Rik|AI267078|Ndg2	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding	0.060000	0.606965	
mm_19026.1	chr2	76968364	76968564	-	1	NA	NA	NA	14083	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.030000	0.457711	
mm_74342.1	chr8	127233957	127234157	+	1	NA	NA	NA	-65555	NM_001013581	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.005000	0.313433	
mm_164477.1	chr16	72957364	72957564	+	1	NA	NA	NA	294315	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.005000	0.308458	52(TTTTTTAAAGCG,+,0.00)
mm_29812.1	chr3	127894506	127894706	-	1	NA	NA	NA	1717	NM_027482	70617	Mm.317049	NM_027482	ENSMUSG00000050549	5730508B09Rik	2700063A17Rik|C80506	RIKEN cDNA 5730508B09 gene	protein-coding	0.005000	0.298507	
mm_141750.1	chr17	34239611	34239811	-	1	NA	NA	NA	806	NM_010389	15002	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	0.020000	0.452736	
mm_90997.1	chr10	14059604	14059804	-	1	NA	NA	NA	93325	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.000000	0.452736	
mm_53073.1	chr6	124931419	124931619	+	1	NA	NA	NA	131	NM_001170341	30853	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.140000	0.781095	
mm_148029.1	chr18	70053180	70053380	-	1	NA	NA	NA	308	NM_001302798	80718	Mm.246753	NM_030554	ENSMUSG00000024511	Rab27b	2310021G14Rik|B130064M09Rik	RAB27B, member RAS oncogene family	protein-coding	0.065000	0.651741	
mm_146114.1	chr18	74268194	74268394	+	1	NA	NA	NA	6	NM_013594	17190	Mm.22522	NM_013594	ENSMUSG00000024561	Mbd1	Cxxc3|PCM1	methyl-CpG binding domain protein 1	protein-coding	0.070000	0.601990	
mm_164275.1	chr15	101743036	101743236	-	1	NA	NA	NA	-39	NM_019956	56735	Mm.358677	NM_019956	ENSMUSG00000051879	Krt71	AA589543|Ca|Cal4|Cu|Krt2-6g|mK6irs|mK6irs1	keratin 71	protein-coding	0.015000	0.527363	-6(GCATATATAAAG,-,0.00)
mm_120402.1	chr14	64950186	64950386	+	1	NA	NA	NA	241	NM_001253731	210925	Mm.71332	NM_153414	ENSMUSG00000021975	Ints9	BC028953|D14Ertd231e	integrator complex subunit 9	protein-coding	0.025000	0.457711	
mm_97057.1	chr11	72671107	72671307	+	1	NA	NA	NA	-18795	NM_009671	11736	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	0.000000	0.343284	48(CTTTTTAAAGAT,+,0.00)
mm_108520.1	chr12	84052080	84052280	+	1	NA	NA	NA	29	NM_134246	171281	Mm.202331	NM_134246	ENSMUSG00000021228	Acot3	AW108394|PTE-Ia|Pte2a	acyl-CoA thioesterase 3	protein-coding	0.015000	0.482587	
mm_28423.1	chr3	90451291	90451491	-	1	NA	NA	NA	14475	NM_008727	18160	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.030000	0.577114	
mm_7833.1	chr1	132139542	132139742	-	1	NA	NA	NA	43	NM_008795	18557	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.045000	0.611940	
mm_119024.1	chr14	30009992	30010192	+	1	NA	NA	NA	1092	NM_001136240	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.015000	0.572139	
mm_7765.1	chr1	131199842	131200042	-	1	NA	NA	NA	243	NM_001311094	54354	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.040000	0.557214	
mm_2404.1	chr1	93755058	93755258	+	1	NA	NA	NA	125	NM_174874	66615	Mm.29087	NM_174874	ENSMUSG00000026280	Atg4b	2510009N07Rik|AW048066|Apg4b|Atg4bl|Autl1	autophagy related 4B, cysteine peptidase	protein-coding	0.155000	0.810945	
mm_128611.1	chr15	58823377	58823577	-	1	NA	NA	NA	-50	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.155000	0.766169	
mm_8307.1	chr1	144076683	144076883	-	1	NA	NA	NA	-72634	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.010000	0.373134	-31(GACTATAAATGA,-,0.00)
mm_135836.1	chr16	58523623	58523823	-	1	NA	NA	NA	-411	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.020000	0.532338	
mm_49501.1	chr6	29768408	29768608	+	1	NA	NA	NA	65	NM_001171000	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.060000	0.691542	
mm_38852.1	chr4	149351615	149351815	-	1	NA	NA	NA	17076	NR_131918	74310	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0.010000	0.537313	
mm_66595.1	chr7	45434518	45434718	-	1	NA	NA	NA	-154	NM_011304	20174	Mm.34410	NM_011304	ENSMUSG00000003868	Ruvbl2	mp47|p47	RuvB-like protein 2	protein-coding	0.035000	0.552239	
mm_171351.1	chr4	109374830	109375030	-	1	NA	NA	NA	31327	NR_131195	102635290	Mm.427859	NR_131195		Ttc39aos1	Gm12750|OTTMUSG00000008290|lincRNA-EPS	Ttc39a opposite strand RNA 1	ncRNA	0.045000	0.452736	
mm_130895.1	chr15	102395133	102395333	-	1	NA	NA	NA	-11083	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.010000	0.542289	
mm_141847.1	chr17	34801337	34801537	-	1	NA	NA	NA	2989	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.005000	0.542289	
mm_81221.1	chr9	107606695	107606895	+	1	NA	NA	NA	297	NM_001291538	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.040000	0.606965	
mm_74744.1	chr8	18978119	18978319	-	1	NA	NA	NA	-103	NM_183039	360217	Mm.271560	NM_183039	ENSMUSG00000053678	Defb40	BD-40	defensin beta 40	protein-coding	0.015000	0.462687	
mm_149559.1	chr19	12695696	12695896	+	1	NA	NA	NA	6	NM_029550	64697	Mm.218561	NM_029550	ENSMUSG00000024694	Keg1	0610008P16Rik|AI316519|GS4059	kidney expressed gene 1	protein-coding	0.010000	0.402985	
mm_144464.1	chr18	23752281	23752481	+	1	NA	NA	NA	48	NM_001162942	212307	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.070000	0.636816	
mm_109581.1	chr12	112589146	112589346	+	1	NA	NA	NA	462	NM_198411	70435	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.045000	0.587065	
mm_158702.1	chrX	162085286	162085486	-	1	NA	NA	NA	74055	NM_001081052	195727	Mm.336313	NM_001081052	ENSMUSG00000059493	Nhs	Gm389|Gm48|Nhs1|Xcat	Nance-Horan syndrome (human)	protein-coding	0.005000	0.477612	
mm_36536.1	chr4	86655426	86655626	-	1	NA	NA	NA	14533	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.005000	0.467662	
mm_150323.1	chr19	34574045	34574245	+	1	NA	NA	NA	-9384	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.020000	0.417910	
mm_63926.1	chr7	139400417	139400617	+	1	NA	NA	NA	11408	NM_001127363	212111	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.015000	0.527363	
mm_38312.1	chr4	137048692	137048892	-	1	NA	NA	NA	-97	NM_198248	230848	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	0.090000	0.601990	
mm_159286.1	chr2	169884747	169884947	+	1	NA	NA	NA	78340	NR_131974	446211	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0.025000	0.517413	
mm_127652.1	chr15	102493110	102493310	+	1	NA	NA	NA	22578	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.005000	0.328358	-55(GTTTTTAAACAC,+,0.00),19(TGCCTTAAAGGC,-,0.00)
mm_40392.1	chr5	52784166	52784366	+	1	NA	NA	NA	1211	NM_030185	78796	Mm.266886	NM_030185	ENSMUSG00000029179	Zcchc4	4930449I23Rik	zinc finger, CCHC domain containing 4	protein-coding	0.000000	0.323383	-98(TTATATAAAAGG,-,0.00)
mm_40009.1	chr5	33018776	33018976	+	1	NA	NA	NA	60	NM_011738	22629	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.180000	0.800995	
mm_37249.1	chr4	118231687	118231887	-	1	NA	NA	NA	-21223	NR_106085	102466820		NR_106085	ENSMUSG00000098596	Mir7226	Gm27630|mmu-mir-7226	microRNA 7226	ncRNA	0.040000	0.611940	
mm_146678.1	chr18	12819721	12819921	-	1	NA	NA	NA	86	NR_045524	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.020000	0.437811	
mm_5266.1	chr1	17097702	17097902	-	1	NA	NA	NA	87	NM_020604	57339	Mm.143761	NM_020604	ENSMUSG00000042686	Jph1	ENSMUSG00000054314|JP-1|Jp1	junctophilin 1	protein-coding	0.140000	0.746269	
mm_80946.1	chr9	102834806	102835006	+	1	NA	NA	NA	-14	NM_013649	20187	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0.190000	0.820896	
mm_134775.1	chr16	23974846	23975046	-	1	NA	NA	NA	13666	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.010000	0.472637	
mm_61732.1	chr7	81862583	81862783	+	1	NA	NA	NA	-4	NM_001291282	107769	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.015000	0.522388	25(GGCCAGTAAAGG,-,0.00)
mm_21881.1	chr2	166154975	166155175	-	1	NA	NA	NA	210	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.165000	0.805970	
mm_129254.1	chr15	76697877	76698077	-	1	NA	NA	NA	1251	NM_182805	76282	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	0.090000	0.626866	
mm_92095.1	chr10	62876962	62877162	-	1	NA	NA	NA	2952	NM_027384	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.010000	0.437811	
mm_51218.1	chr6	71360882	71361082	+	1	NA	NA	NA	-12445	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.015000	0.512438	
mm_99183.1	chr11	100860250	100860450	+	1	NA	NA	NA	-134	NM_001164062	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.100000	0.711443	
mm_31457.1	chr4	48663455	48663655	+	1	NA	NA	NA	41	NM_026509	68016	Mm.133444	NM_026509	ENSMUSG00000028348	Murc	2310039E09Rik	muscle-related coiled-coil protein	protein-coding	0.035000	0.492537	-34(ACCCTTTAAAGC,-,0.00),-33(CCCTTTAAAGCA,+,0.00),-32(CCTTTAAAGCAG,+,0.00)
mm_87285.1	chr10	42276796	42276996	+	1	NA	NA	NA	-154	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.135000	0.786070	
mm_138474.1	chr17	35194412	35194612	+	1	NA	NA	NA	5	NM_008518	16994	Mm.1715	NM_008518	ENSMUSG00000024399	Ltb	AI662801|LTbeta|Tnfc|Tnfsf3|Tnlg1c|p33	lymphotoxin B	protein-coding	0.025000	0.676617	
mm_28087.1	chr3	85533173	85533373	-	1	NA	NA	NA	-40856	NM_144896	229487	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0.010000	0.522388	4(GCTTTTAGATCA,+,0.00)
mm_113134.1	chr13	24633371	24633571	+	1	NA	NA	NA	-5177	NM_001080381	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.005000	0.527363	
mm_159003.1	chr1	154726020	154726220	-	1	NA	NA	NA	-200	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.025000	0.542289	
mm_154364.1	chrM	7677	7877	+	1	NA	NA	NA	NA	NA									0.005000	0.313433	
mm_148311.1	chr18	83754094	83754294	-	1	NA	NA	NA	332368	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.015000	0.388060	
mm_59063.1	chr7	19420064	19420264	+	1	NA	NA	NA	1253	NR_073014	100503495	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	0.040000	0.587065	
mm_74727.1	chr8	17535221	17535421	-	1	NA	NA	NA	64	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.115000	0.791045	
mm_28856.1	chr3	96925830	96926030	-	1	NA	NA	NA	121	NM_008123	14616	Mm.258183	NM_008123	ENSMUSG00000049908	Gja8	Aey5|Cnx50|Cx50|Lop10	gap junction protein, alpha 8	protein-coding	0.030000	0.512438	-36(GCTTTTAGGTGG,+,0.00)
mm_129923.1	chr15	84444202	84444402	-	1	NA	NA	NA	2308	NM_001347543	72301	Mm.275387	NM_001163145	ENSMUSG00000062760	1810041L15Rik	Kiaa1644	RIKEN cDNA 1810041L15 gene	protein-coding	0.020000	0.631841	
mm_69093.1	chr7	127018472	127018672	-	1	NA	NA	NA	-1220	NM_030240	67278	Mm.345385	NM_030240	ENSMUSG00000030680	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0.005000	0.611940	
mm_62158.1	chr7	97162460	97162660	+	1	NA	NA	NA	80809	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.000000	0.407960	-40(TCCTTTATAAGA,-,0.00),59(CTTCTTAAAAGG,-,0.00)
mm_148837.1	chr19	6363632	6363832	+	1	NA	NA	NA	42	NR_122118	22668	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.090000	0.636816	
mm_33370.1	chr4	129514873	129515073	+	1	NA	NA	NA	1392	NM_010807	17357	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0.035000	0.572139	
mm_8805.1	chr1	161876498	161876698	-	1	NA	NA	NA	63	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.140000	0.776119	
mm_45628.1	chr5	76304435	76304635	-	1	NA	NA	NA	13	NM_007715	12753	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0.140000	0.781095	
mm_26329.1	chr3	142543953	142544153	+	1	NA	NA	NA	13717	NM_145545	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.020000	0.562189	
mm_128575.1	chr15	57772737	57772937	-	1	NA	NA	NA	78170	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.020000	0.462687	
mm_17751.1	chr2	32716597	32716797	-	1	NA	NA	NA	-3725	NR_039536	100628606		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0.025000	0.547264	
mm_77189.1	chr8	111876593	111876793	-	1	NA	NA	NA	-18	NM_025781	66817	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	0.135000	0.731343	
mm_150965.1	chr19	46500116	46500316	+	1	NA	NA	NA	-1432	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.070000	0.656716	
mm_44465.1	chr5	23386387	23386587	-	1	NA	NA	NA	47866	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.005000	0.482587	
mm_1965.1	chr1	86487701	86487901	+	1	NA	NA	NA	-38935	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.125000	0.671642	
mm_49427.1	chr6	29272320	29272520	+	1	NA	NA	NA	-68	NM_001190461	69573	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.055000	0.592040	
mm_49461.1	chr6	29419103	29419303	+	1	NA	NA	NA	-13950	NM_001081185	68794	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	0.020000	0.552239	
mm_147426.1	chr18	46237769	46237969	-	1	NA	NA	NA	-25262	NM_178872	28105	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.000000	0.398010	
mm_11607.1	chr2	34406763	34406963	+	1	NA	NA	NA	12	NM_001290626	227743	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	0.120000	0.726368	
mm_47923.1	chr5	135012654	135012854	-	1	NA	NA	NA	403	NR_026688	69812	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0.015000	0.611940	
mm_147931.1	chr18	65970113	65970313	-	1	NA	NA	NA	-35	NM_145493	225644	Mm.192285	NM_145493	ENSMUSG00000024519	Cplx4	A930004D23Rik|CPXIV|Gm957	complexin 4	protein-coding	0.040000	0.517413	
mm_11492.1	chr2	32455997	32456197	+	1	NA	NA	NA	-4627	NM_146118	227731	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.010000	0.447761	
mm_60000.1	chr7	30606832	30607032	+	1	NA	NA	NA	5802	NM_026815	109637	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	0.010000	0.532338	
mm_127843.1	chr15	6874665	6874865	-	1	NA	NA	NA	-452	NM_001310469	18414	Mm.10760	NM_011019	ENSMUSG00000022146	Osmr	OSMRB	oncostatin M receptor	protein-coding	0.045000	0.487562	
mm_161775.1	chr17	37660465	37660665	-	1	NA	NA	NA	-234	NM_207155	258263	Mm.377399	NM_207155	ENSMUSG00000095286	Olfr117	MOR256-33	olfactory receptor 117	protein-coding	0.000000	0.502488	
mm_100687.1	chr11	3504898	3505098	-	1	NA	NA	NA	-177	NM_172439	170835	Mm.24313	NM_172439	ENSMUSG00000034570	Inpp5j	Pib5pa|Pipp	inositol polyphosphate 5-phosphatase J	protein-coding	0.005000	0.577114	
mm_17656.1	chr2	32065004	32065204	-	1	NA	NA	NA	14158	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	0.040000	0.636816	
mm_43271.1	chr5	130384639	130384839	+	1	NA	NA	NA	-108	NM_198665	381673	Mm.192133	NM_198665	ENSMUSG00000052014	A330070K13Rik	Gm1051	RIKEN cDNA A330070K13 gene	protein-coding	0.015000	0.522388	
mm_164345.1	chr16	16852205	16852405	+	1	NA	NA	NA	11680	NM_001190325	16136	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	0.000000	0.298507	
mm_49606.1	chr6	30744784	30744984	+	1	NA	NA	NA	3585	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.025000	0.467662	
mm_129548.1	chr15	79414582	79414782	-	1	NA	NA	NA	-11379	NM_172608	223693	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	0.015000	0.522388	
mm_95541.1	chr11	52282597	52282797	+	1	NA	NA	NA	-102	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.070000	0.636816	
mm_59833.1	chr7	29303895	29304095	+	1	NA	NA	NA	-10	NM_013874	29861	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.145000	0.781095	
mm_47024.1	chr5	115500379	115500579	-	1	NA	NA	NA	-6197	NM_011223	19303	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0.015000	0.487562	
mm_151042.1	chr19	47023743	47023943	+	1	NA	NA	NA	-8654	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.025000	0.537313	
mm_87018.1	chr10	27936231	27936431	+	1	NA	NA	NA	-138489	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0.020000	0.398010	
mm_27708.1	chr3	67515376	67515576	-	1	NA	NA	NA	47	NM_001164763	109222	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	0.090000	0.706468	
mm_94330.1	chr11	4266570	4266770	+	1	NA	NA	NA	-126	NM_001039537	16878	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.130000	0.741294	
mm_102998.1	chr11	69686971	69687171	-	1	NA	NA	NA	-1517	NM_023517	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.020000	0.572139	
mm_145289.1	chr18	53245549	53245749	+	1	NA	NA	NA	-13	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.170000	0.815920	
mm_167775.1	chr9	112308137	112308337	+	1	NA	NA	NA	51663	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA	0.005000	0.412935	
mm_2138.1	chr1	88087725	88087925	+	1	NA	NA	NA	-7176	NM_201642	394432	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	0.010000	0.522388	
mm_62972.1	chr7	119900001	119900201	+	1	NA	NA	NA	-10	NR_126475	73919	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0.000000	0.373134	
mm_172618.1	chr8	20122192	20122392	+	1	NA	NA	NA	175140	NR_030708	547150	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0.090000	0.671642	
mm_147058.1	chr18	34947896	34948096	-	1	NA	NA	NA	6355	NM_010481	15526	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.010000	0.447761	
mm_120333.1	chr14	63416879	63417079	+	1	NA	NA	NA	208	NM_007549	12143	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.010000	0.557214	
mm_18298.1	chr2	52742322	52742522	-	1	NA	NA	NA	-273	NM_019667	56324	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0.070000	0.671642	
mm_2012.1	chr1	87127610	87127810	+	1	NA	NA	NA	2702	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.065000	0.661692	
mm_34827.1	chr4	155095794	155095994	+	1	NA	NA	NA	9317	NM_001081100	76866	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0.020000	0.447761	
mm_57396.1	chr6	124862956	124863156	-	1	NA	NA	NA	861	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.025000	0.542289	
mm_50415.1	chr6	48746129	48746329	+	1	NA	NA	NA	32	NM_175035	317757	Mm.455917	NM_175035	ENSMUSG00000043505	Gimap5	D630024P16|E230026N22Rik	GTPase, IMAP family member 5	protein-coding	0.020000	0.517413	
mm_41774.1	chr5	103692302	103692502	+	1	NA	NA	NA	-36670	NM_001163550	74218	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.090000	0.731343	
mm_118582.1	chr14	19830580	19830780	+	1	NA	NA	NA	-6857	NM_026528	68045	Mm.21932	NM_026528	ENSMUSG00000021807	2700060E02Rik	-	RIKEN cDNA 2700060E02 gene	protein-coding	0.015000	0.497512	
mm_125667.1	chr15	65810083	65810283	+	1	NA	NA	NA	23142	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0.025000	0.457711	
mm_8884.1	chr1	162866459	162866659	-	1	NA	NA	NA	51	NM_010231	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.010000	0.432836	
mm_109430.1	chr12	110615368	110615568	+	1	NA	NA	NA	14073	NM_030238	13424	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0.025000	0.477612	
mm_94565.1	chr11	11685828	11686028	+	1	NA	NA	NA	3	NM_001025597	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.140000	0.746269	
mm_103517.1	chr11	76779134	76779334	-	1	NA	NA	NA	-15679	NM_016810	53334	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	0.010000	0.512438	
mm_39041.1	chr4	152360921	152361121	-	1	NA	NA	NA	22370	NM_001081376	269610	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding	0.075000	0.656716	
mm_58341.1	chr6	147042602	147042802	-	1	NA	NA	NA	-68	NM_145573	232536	Mm.46656	NM_145573	ENSMUSG00000040112	Mrps35	MDSO23|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding	0.055000	0.577114	
mm_23635.1	chr3	66985563	66985763	+	1	NA	NA	NA	-9	NM_025822	66880	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	0.065000	0.537313	
mm_161672.1	chr17	14956661	14956861	-	1	NA	NA	NA	4499	NM_024250	72057	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	0.020000	0.427861	42(GTGTATTAATGG,-,0.00)
mm_72969.1	chr8	92864782	92864982	+	1	NA	NA	NA	9532	NM_173014	270084	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	A330042H22|Aytl1|Aytl1a|lpafat1	lysophosphatidylcholine acyltransferase 2	protein-coding	0.010000	0.353234	
mm_28148.1	chr3	87512494	87512694	-	1	NA	NA	NA	-12984	NM_001083318	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.020000	0.542289	
mm_128967.1	chr15	74832063	74832263	-	1	NA	NA	NA	9480	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.010000	0.467662	
mm_85934.1	chr9	112097729	112097929	-	1	NA	NA	NA	20882	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.010000	0.532338	
mm_112290.1	chr12	114513692	114513892	-	1	NA	NA	NA	-98	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.010000	0.388060	-34(ACCCTTAAAAAC,-,0.00),-33(CCCTTAAAAACC,+,0.00),-32(CCTTAAAAACCG,+,0.00)
mm_28157.1	chr3	87753158	87753358	-	1	NA	NA	NA	-4635	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding	0.010000	0.432836	
mm_29530.1	chr3	116661998	116662198	-	1	NA	NA	NA	579	NM_008246	15247	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	0.155000	0.805970	
mm_148375.1	chr19	3205486	3205686	+	1	NA	NA	NA	-7883	NR_045304	70011	Mm.393871	NR_045304	ENSMUSG00000100969	1700030N03Rik	1700087C08Rik	RIKEN cDNA 1700030N03 gene	ncRNA	0.065000	0.532338	
mm_10297.1	chr2	10439777	10439977	+	1	NA	NA	NA	-26786	NR_130333	100526481		NR_130333	ENSMUSG00000092793	Mir466m	mmu-mir-466m	microRNA 466m	ncRNA	0.010000	0.402985	-59(CCTTAAAAAATC,+,0.00),32(TCCTTAATAGAG,+,0.00)
mm_22221.1	chr2	174427725	174427925	-	1	NA	NA	NA	11214	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.020000	0.512438	
mm_168922.1	chr12	59999773	59999973	-	1	NA	NA	NA	-780390	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.000000	0.497512	-31(CCTTTTATAAGC,+,0.00),-31(CCTTTTATAAGC,-,0.00)
mm_10969.1	chr2	25706669	25706869	+	1	NA	NA	NA	-110	NM_023326	107771	Mm.330057	NM_023326	ENSMUSG00000049086	Bmyc	2900002K07Rik|AW060705|Mycb	brain expressed myelocytomatosis oncogene	protein-coding	0.095000	0.651741	
mm_133779.1	chr16	94969170	94969370	+	1	NA	NA	NA	28426	NM_001025584	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.010000	0.547264	
mm_133274.1	chr16	77389830	77390030	+	1	NA	NA	NA	60602	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.005000	0.363184	
mm_149987.1	chr19	29251701	29251901	+	1	NA	NA	NA	-2	NM_001048177	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.155000	0.815920	
mm_117019.1	chr13	58127884	58128084	-	1	NA	NA	NA	572	NM_029872	77134	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	0.145000	0.681592	
mm_78064.1	chr9	15208337	15208537	+	1	NA	NA	NA	-30608	NM_026955	69137	Mm.41396	NM_026955	ENSMUSG00000031937	Vstm5	2200002K05Rik	V-set and transmembrane domain containing 5	protein-coding	0.005000	0.487562	
mm_27366.1	chr3	50437933	50438133	-	1	NA	NA	NA	5580	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.402985	
mm_19243.1	chr2	84727168	84727368	-	1	NA	NA	NA	0	NM_133840	98985	Mm.21583	NM_133840	ENSMUSG00000027079	Clp1	AI462438|Heab	CLP1, cleavage and polyadenylation factor I subunit	protein-coding	0.070000	0.532338	
mm_13675.1	chr2	116073784	116073984	+	1	NA	NA	NA	2212	NR_033447	69974	Mm.440293	NR_033447		2810405F15Rik	-	RIKEN cDNA 2810405F15 gene	ncRNA	0.010000	0.358209	58(ACCTTTAAAAGC,-,0.00),59(CCTTTAAAAGCT,+,0.00)
mm_118098.1	chr13	103909740	103909940	-	1	NA	NA	NA	10746	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.000000	0.313433	
mm_166540.1	chr6	31955149	31955349	+	1	NA	NA	NA	-95039	NM_029587	76382	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0.005000	0.437811	
mm_67957.1	chr7	100514674	100514874	-	1	NA	NA	NA	41	NM_153527	69387	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	0.025000	0.522388	
mm_23738.1	chr3	69156717	69156917	+	1	NA	NA	NA	25584	NR_126533	381452	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	0.040000	0.467662	
mm_18124.1	chr2	44997301	44997501	-	1	NA	NA	NA	25776	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.015000	0.417910	
mm_121672.1	chr14	12466970	12467170	-	1	NA	NA	NA	-121205	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	0.020000	0.497512	
mm_162420.1	chr1	91456307	91456507	-	1	NA	NA	NA	2921	NM_011066	18627	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.025000	0.467662	
mm_115102.1	chr13	102760156	102760356	+	1	NA	NA	NA	1	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.000000	0.407960	
mm_35250.1	chr4	19877652	19877852	-	1	NA	NA	NA	44814	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.015000	0.412935	
mm_66895.1	chr7	59651576	59651776	-	1	NA	NA	NA	24403	NR_002895	64243	Mm.423722	NR_002895	ENSMUSG00000096019	Snord116	MBII-85|Pwcr1	small nucleolar RNA, C/D box 116	snoRNA	0.000000	0.447761	
mm_16012.1	chr2	167395901	167396101	+	1	NA	NA	NA	-25709	NM_148929	77031	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.010000	0.512438	-49(CAACATAAAAGG,-,0.00),-34(TGCTATAAAAGG,-,0.00)
mm_92224.1	chr10	68279071	68279271	-	1	NA	NA	NA	-445	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.040000	0.462687	
mm_4685.1	chr1	180598147	180598347	+	1	NA	NA	NA	11046	NR_105869	102466761		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	0.040000	0.582090	
mm_59953.1	chr7	30427004	30427204	+	1	NA	NA	NA	3800	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.025000	0.582090	
mm_152862.1	chr19	24224801	24225001	-	1	NA	NA	NA	125	NM_011597	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.120000	0.741294	
mm_163453.1	chr12	89852242	89852442	+	1	NA	NA	NA	39859	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.000000	0.363184	
mm_161590.1	chr16	33596464	33596664	+	1	NA	NA	NA	77969	NM_001083902	171286	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.010000	0.437811	
mm_58554.1	chr7	4740489	4740689	+	1	NA	NA	NA	462	NM_001115018	232811	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	0.020000	0.562189	
mm_145228.1	chr18	50128103	50128303	+	1	NA	NA	NA	2	NM_008292	15488	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.060000	0.582090	
mm_169398.1	chr14	46882837	46883037	+	1	NA	NA	NA	-28	NM_028966	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.110000	0.706468	
mm_56806.1	chr6	116657401	116657601	-	1	NA	NA	NA	6817	NM_001166580	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.015000	0.532338	
mm_150398.1	chr19	36554575	36554775	+	1	NA	NA	NA	36	NM_172637	226098	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain containing 2	protein-coding	0.215000	0.875622	
mm_125059.1	chr15	25933463	25933663	+	1	NA	NA	NA	11	NM_001277318	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.025000	0.537313	
mm_140704.1	chr17	14679911	14680111	-	1	NA	NA	NA	14251	NM_011581	21826	Mm.26688	NM_011581	ENSMUSG00000023885	Thbs2	TSP2|Thbs-2	thrombospondin 2	protein-coding	0.005000	0.557214	
mm_70086.1	chr7	142654299	142654499	-	1	NA	NA	NA	597	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.060000	0.616915	
mm_122328.1	chr14	37098256	37098456	-	1	NA	NA	NA	-45	NM_130878	170677	Mm.156506	NM_130878	ENSMUSG00000021803	Cdhr1	Pcdh21|Prcad|mKIAA1775	cadherin-related family member 1	protein-coding	0.065000	0.616915	
mm_40340.1	chr5	44226699	44226899	+	1	NA	NA	NA	-193	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.205000	0.835821	
mm_7860.1	chr1	132542768	132542968	-	1	NA	NA	NA	72	NM_177129	21367	Mm.260861	NM_011531	ENSMUSG00000053024	Cntn2	D130012K04Rik|TAG-1|Tax	contactin 2	protein-coding	0.085000	0.706468	
mm_37006.1	chr4	111880560	111880760	-	1	NA	NA	NA	22136	NM_145551	230612	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding	0.005000	0.492537	
mm_26621.1	chr3	152415679	152415879	+	1	NA	NA	NA	19095	NM_001287139	108946	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.005000	0.328358	
mm_45857.1	chr5	87786572	87786772	-	1	NA	NA	NA	12222	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.005000	0.368159	
mm_100255.1	chr11	117331604	117331804	+	1	NA	NA	NA	-11	NM_017380	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.015000	0.616915	
mm_105542.1	chr11	106314436	106314636	-	1	NA	NA	NA	26	NM_008339	15985	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	0.010000	0.587065	
mm_29446.1	chr3	110143843	110144043	-	1	NA	NA	NA	-471	NM_030699	80883	Mm.39262	NM_030699	ENSMUSG00000059857	Ntng1	A930010C08Rik|AI853992|Lmnt1	netrin G1	protein-coding	0.045000	0.572139	
mm_16030.1	chr2	167590644	167590844	+	1	NA	NA	NA	41261	NM_001311146	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.030000	0.582090	
mm_137439.1	chr17	26508614	26508814	+	1	NA	NA	NA	-242	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.100000	0.726368	
mm_72718.1	chr8	85026775	85026975	+	1	NA	NA	NA	42	NM_026760	68544	Mm.196005	NM_026760	ENSMUSG00000041203	2310036O22Rik	1110002H14Rik|AI854688	RIKEN cDNA 2310036O22 gene	protein-coding	0.110000	0.691542	
mm_41402.1	chr5	90786300	90786500	+	1	NA	NA	NA	299	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.020000	0.597015	
mm_130850.1	chr15	101940331	101940531	-	1	NA	NA	NA	-107	NM_146063	223917	Mm.162744	NM_146063	ENSMUSG00000061397	Krt79	BC031593	keratin 79	protein-coding	0.015000	0.651741	
mm_156987.1	chrX	7412638	7412838	-	1	NA	NA	NA	8309	NR_027925	68355	Mm.45111	NR_027924		2010204K13Rik	0610010M13Rik|Cip7	RIKEN cDNA 2010204K13 gene	ncRNA	0.015000	0.472637	
mm_64502.1	chr7	143476016	143476216	+	1	NA	NA	NA	1000	NM_001042760	18400	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0.020000	0.621891	
mm_43245.1	chr5	130144805	130145005	+	1	NA	NA	NA	17	NM_172509	212919	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	0.075000	0.611940	
mm_18213.1	chr2	49330386	49330586	-	1	NA	NA	NA	84586	NM_001290656	109241	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630|OTTMUSG00000012483	methyl-CpG binding domain protein 5	protein-coding	0.010000	0.572139	
mm_140090.1	chr17	75465481	75465681	+	1	NA	NA	NA	43	NM_207246	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding	0.035000	0.537313	
mm_165525.1	chr2	174774725	174774925	+	1	NA	NA	NA	14206	NM_007903	13616	Mm.9478	NM_007903	ENSMUSG00000027524	Edn3	ET-3|PPET3|ls|tmgc48	endothelin 3	protein-coding	0.010000	0.412935	
mm_140900.1	chr17	24097992	24098192	-	1	NA	NA	NA	-24607	NM_027008	69259	Mm.28171	NM_027008	ENSMUSG00000016946	Kctd5	2610030N08Rik|mKIAA0176	potassium channel tetramerisation domain containing 5	protein-coding	0.010000	0.412935	
mm_62579.1	chr7	105226094	105226294	+	1	NA	NA	NA	-21853	NM_147069	259072	Mm.377823	NM_147069	ENSMUSG00000048425	Olfr686	MOR35-1	olfactory receptor 686	protein-coding	0.000000	0.457711	
mm_146507.1	chr18	3337219	3337419	-	1	NA	NA	NA	270	NM_001110851	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.175000	0.776119	
mm_33992.1	chr4	137901800	137902000	+	1	NA	NA	NA	39663	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.025000	0.507463	
mm_169405.1	chr14	50856142	50856342	+	1	NA	NA	NA	14312	NM_009351	21745	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	0.035000	0.557214	-42(CCTTTTATAAGC,+,0.00),-42(CCTTTTATAAGC,-,0.00)
mm_39021.1	chr4	152131599	152131799	-	1	NA	NA	NA	-2774	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.080000	0.681592	
mm_75880.1	chr8	70776583	70776783	-	1	NA	NA	NA	29	NM_008841	18709	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)	protein-coding	0.145000	0.756219	
mm_122758.1	chr14	54225192	54225392	-	1	NA	NA	NA	28637	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.030000	0.577114	
mm_39103.1	chr4	154921480	154921680	-	1	NA	NA	NA	6497	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.005000	0.462687	
mm_18759.1	chr2	73452589	73452789	-	1	NA	NA	NA	1200	NM_001289722	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.020000	0.442786	
mm_6976.1	chr1	86351986	86352186	-	1	NA	NA	NA	41	NR_106184	102465895		NR_106184	ENSMUSG00000104627	Gm24148	Mir3535|mir-3535|mmu-mir-3535	predicted gene, 24148	ncRNA	0.000000	0.348259	
mm_88699.1	chr10	80142424	80142624	+	1	NA	NA	NA	209	NM_025313	66043	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0.115000	0.686567	
mm_110918.1	chr12	76254991	76255191	-	1	NA	NA	NA	-141	NM_138745	108156	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0.055000	0.582090	
mm_171300.1	chr3	93555005	93555205	+	1	NA	NA	NA	-12	NM_009112	20194	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	0.080000	0.696517	
mm_28813.1	chr3	96259682	96259882	-	1	NA	NA	NA	3535	NM_033596	97122	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0.010000	0.472637	
mm_136653.1	chr17	5975619	5975819	+	1	NA	NA	NA	133	NM_011523	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.035000	0.502488	
mm_25542.1	chr3	115801716	115801916	+	1	NA	NA	NA	86243	NR_027894	68161	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.010000	0.452736	
mm_163415.1	chr12	79130669	79130869	+	1	NA	NA	NA	-19	NM_009705	11847	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.075000	0.646766	
mm_85819.1	chr9	110408129	110408329	-	1	NA	NA	NA	-19	NM_001081043	104831	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.100000	0.701493	
mm_20025.1	chr2	119456331	119456531	-	1	NA	NA	NA	21198	NM_026574	68142	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	0.005000	0.308458	
mm_138865.1	chr17	43016464	43016664	+	1	NA	NA	NA	9	NM_178589	94185	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0.080000	0.631841	
mm_96326.1	chr11	64438429	64438629	+	1	NA	NA	NA	-1855	NR_028445	654805	Mm.436132	NR_028445		F930015N05Rik	-	RIKEN cDNA F930015N05 gene	ncRNA	0.005000	0.333333	
mm_31171.1	chr4	43454077	43454277	+	1	NA	NA	NA	449	NM_001110320	12517	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.025000	0.572139	
mm_136667.1	chr17	6106513	6106713	+	1	NA	NA	NA	-217	NM_001103181	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.135000	0.756219	
mm_54997.1	chr6	48833880	48834080	-	1	NA	NA	NA	7008	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.035000	0.562189	
mm_155720.1	chrX	96115335	96115535	+	1	NA	NA	NA	19390	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.010000	0.368159	
mm_43108.1	chr5	124530614	124530814	+	1	NA	NA	NA	677	NM_021430	75695	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0.085000	0.646766	
mm_18030.1	chr2	38643816	38644016	-	1	NA	NA	NA	-10	NM_011187	19177	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0.105000	0.597015	
mm_17721.1	chr2	32388138	32388338	-	1	NA	NA	NA	-499	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.005000	0.582090	
mm_130496.1	chr15	98807869	98808069	-	1	NA	NA	NA	-44	NM_001013741	13199	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.105000	0.701493	36(GGGTATATATAG,-,0.00)
mm_19737.1	chr2	104676549	104676749	-	1	NA	NA	NA	35513	NM_177190	320554	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	0.015000	0.437811	
mm_128479.1	chr15	50889863	50890063	-	1	NA	NA	NA	78	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.065000	0.472637	
mm_131126.1	chr16	5884842	5885042	+	1	NA	NA	NA	149	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.090000	0.641791	
mm_34703.1	chr4	152096659	152096859	+	1	NA	NA	NA	40	NM_001285999	269608	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	0.070000	0.701493	
mm_36771.1	chr4	102569055	102569255	-	1	NA	NA	NA	-905	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.020000	0.447761	
mm_13382.1	chr2	103945074	103945274	+	1	NA	NA	NA	-12821	NM_001142337	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.010000	0.432836	
mm_153865.1	chr19	46670616	46670816	-	1	NA	NA	NA	2284	NM_007809	13074	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.035000	0.462687	
mm_87250.1	chr10	41450292	41450492	+	1	NA	NA	NA	34	NR_102360	268294	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	0.105000	0.706468	
mm_65729.1	chr7	28381195	28381395	-	1	NA	NA	NA	-2067	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.050000	0.572139	
mm_130344.1	chr15	97731439	97731639	-	1	NA	NA	NA	-134	NM_001168693	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.005000	0.502488	
mm_172797.1	chr9	113758599	113758799	+	1	NA	NA	NA	17226	NM_001114347	76499	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.025000	0.542289	
mm_42728.1	chr5	120621215	120621415	+	1	NA	NA	NA	8185	NM_028041	71990	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0.055000	0.562189	
mm_73519.1	chr8	107457701	107457901	+	1	NA	NA	NA	21403	NM_025830	66894	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.015000	0.502488	
mm_173252.1	chrX	94541864	94542064	-	1	NA	NA	NA	110	NM_019791	94275	Mm.27578	NM_019791	ENSMUSG00000025151	Maged1	2810433C11Rik|5430405L04Rik|DXBwg1492e|Dlixin|Dlxin-1|Dlxin1|MAGE-D1|NRAGE|mFLJ00163	melanoma antigen, family D, 1	protein-coding	0.095000	0.646766	
mm_13471.1	chr2	105682585	105682785	+	1	NA	NA	NA	222	NM_001310145	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.035000	0.492537	
mm_153372.1	chr19	40305333	40305533	-	1	NA	NA	NA	-33817	NM_016861	54132	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	0.010000	0.393035	
mm_5071.1	chr1	3319406	3319606	-	1	NA	NA	NA	351992	NM_001011874	497097	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.000000	0.363184	
mm_37824.1	chr4	131929671	131929871	-	1	NA	NA	NA	8000	NM_001201367	623230	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.020000	0.512438	
mm_104367.1	chr11	94351248	94351448	-	1	NA	NA	NA	23347	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.005000	0.452736	
mm_133698.1	chr16	92824535	92824735	+	1	NA	NA	NA	1439	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.015000	0.452736	
mm_47429.1	chr5	123174305	123174505	-	1	NA	NA	NA	8281	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.035000	0.537313	
mm_3364.1	chr1	138273676	138273876	+	1	NA	NA	NA	38	NM_177397	338375	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.010000	0.512438	
mm_131446.1	chr16	16302871	16303071	+	1	NA	NA	NA	6	NM_198246	70120	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	0.130000	0.711443	
mm_140922.1	chr17	24209297	24209497	-	1	NA	NA	NA	-10	NM_010947	18209	Mm.259542	NM_010947	ENSMUSG00000036473	Ntn3	Ntn2l	netrin 3	protein-coding	0.055000	0.741294	
mm_78043.1	chr9	14500538	14500738	+	1	NA	NA	NA	19	NM_023153	66070	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	0.060000	0.547264	
mm_159944.1	chr6	83794862	83795062	+	1	NA	NA	NA	-38	NM_001347315	56174	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	0.070000	0.661692	
mm_134176.1	chr16	10954679	10954879	-	1	NA	NA	NA	38342	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.000000	0.412935	
mm_139465.1	chr17	55959033	55959233	+	1	NA	NA	NA	-54	NM_028381	72886	Mm.22796	NM_028381	ENSMUSG00000003208	Ccdc94	2900016D05Rik|AI413813	coiled-coil domain containing 94	protein-coding	0.085000	0.582090	
mm_109131.1	chr12	105837899	105838099	+	1	NA	NA	NA	53302	NM_001347440	18789	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0.015000	0.323383	
mm_81211.1	chr9	107580640	107580840	+	1	NA	NA	NA	71	NM_019750	56441	Mm.10305	NM_019750	ENSMUSG00000079334	Nat6	AI225910|Fus2	N-acetyltransferase 6	protein-coding	0.045000	0.601990	
mm_123296.1	chr14	61614775	61614975	-	1	NA	NA	NA	7418	NM_001039105	328424	Mm.224464	NM_206974	ENSMUSG00000046168	Kcnrg	Clld4|E030012H22Rik|Gm745	potassium channel regulator	protein-coding	0.015000	0.412935	
mm_298.1	chr1	23288679	23288879	+	1	NA	NA	NA	-2922	NR_029717	723964		NR_029717	ENSMUSG00000065567	Mir30c-2	Mirn30c-2|mir-30c-2	microRNA 30c-2	ncRNA	0.005000	0.338308	
mm_6552.1	chr1	75133803	75134003	-	1	NA	NA	NA	-13	NM_194333	22626	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.025000	0.542289	
mm_160514.1	chr9	21835446	21835646	+	1	NA	NA	NA	36	NM_001080940	624219	Mm.440264	NM_001080940	ENSMUSG00000047822	Angptl8	EG624219|Gm6484|Rifl	angiopoietin-like 8	protein-coding	0.035000	0.606965	
mm_43951.1	chr5	145167133	145167333	+	1	NA	NA	NA	20	NM_001291248	54188	Mm.196884	NM_178576	ENSMUSG00000029625	Cpsf4	30kDa|C79664	cleavage and polyadenylation specific factor 4	protein-coding	0.105000	0.706468	
mm_119800.1	chr14	54211298	54211498	+	1	NA	NA	NA	42531	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.025000	0.522388	
mm_171942.1	chr5	70210113	70210313	-	1	NA	NA	NA	-617909	NM_001347363	67980	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	0.055000	0.646766	
mm_58443.1	chr7	3298778	3298978	+	1	NA	NA	NA	-4654	NM_001291434	18752	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	0.005000	0.383085	-92(CGGCCTTAAAGG,-,0.00),-91(GGCCTTAAAGGC,-,0.00)
mm_21492.1	chr2	163397749	163397949	-	1	NA	NA	NA	124	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	0.040000	0.542289	
mm_109634.1	chr12	112767784	112767984	+	1	NA	NA	NA	7229	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.025000	0.577114	
mm_123319.1	chr14	62530980	62531180	-	1	NA	NA	NA	-24657	NM_001243857	629059	Mm.291864	NM_001243857	ENSMUSG00000035184	Fam124a	EG629059	family with sequence similarity 124, member A	protein-coding	0.005000	0.427861	
mm_76020.1	chr8	75034292	75034492	-	1	NA	NA	NA	706	NM_011622	21968	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.040000	0.527363	
mm_10185.1	chr2	4881717	4881917	+	1	NA	NA	NA	253	NM_175400	109079	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0.115000	0.641791	
mm_56528.1	chr6	99522481	99522681	-	1	NA	NA	NA	-1588	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.125000	0.641791	
mm_133943.1	chr16	3908504	3908704	-	1	NA	NA	NA	85	NM_028484	73261	Mm.486226	NM_028484	ENSMUSG00000005983	1700037C18Rik	2810022L20Rik	RIKEN cDNA 1700037C18 gene	protein-coding	0.065000	0.577114	
mm_48204.1	chr5	137597212	137597412	-	1	NA	NA	NA	3396	NM_001254762	68929	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	0.025000	0.587065	
mm_140280.1	chr17	85018818	85019018	+	1	NA	NA	NA	-9429	NM_009205	20532	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	0.010000	0.383085	
mm_58249.1	chr6	145048677	145048877	-	1	NA	NA	NA	35	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.080000	0.646766	
mm_11208.1	chr2	29362823	29363023	+	1	NA	NA	NA	-15591	NM_001290489	68975	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	0.000000	0.432836	
mm_82929.1	chr9	35175896	35176096	-	1	NA	NA	NA	-9	NM_027030	69305	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	0.075000	0.631841	
mm_153066.1	chr19	32210886	32211086	-	1	NA	NA	NA	27	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.060000	0.651741	
mm_60866.1	chr7	45917940	45918140	+	1	NA	NA	NA	2809	NM_001146346	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.040000	0.567164	
mm_167060.1	chr7	93986233	93986433	+	1	NA	NA	NA	906454	NM_021427	58238	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.000000	0.363184	
mm_38536.1	chr4	141571431	141571631	-	1	NA	NA	NA	25369	NR_030695	320456	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.015000	0.626866	
mm_140447.1	chr17	88597524	88597724	+	1	NA	NA	NA	-28931	NM_029858	77057	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.040000	0.691542	
mm_21837.1	chr2	165792768	165792968	-	1	NA	NA	NA	65305	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.045000	0.567164	
mm_56314.1	chr6	92242367	92242567	-	1	NA	NA	NA	2183	NM_009426	22044	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	0.000000	0.477612	
mm_133206.1	chr16	74619935	74620135	+	1	NA	NA	NA	-209123	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.025000	0.457711	
mm_156732.1	chrX	159941603	159941803	+	1	NA	NA	NA	-990	NM_001290661	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.000000	0.388060	
mm_22963.1	chr3	32529438	32529638	+	1	NA	NA	NA	56	NM_024200	67414	Mm.290414	NM_024200	ENSMUSG00000027668	Mfn1	2310002F04Rik|6330416C07Rik|D3Ertd265e|HR2|mKIAA4032	mitofusin 1	protein-coding	0.095000	0.716418	
mm_33669.1	chr4	133185594	133185794	+	1	NA	NA	NA	-9961	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.035000	0.522388	
mm_63321.1	chr7	126941871	126942071	+	1	NA	NA	NA	7610	NM_001347657	233879	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0.010000	0.517413	
mm_68649.1	chr7	118491739	118491939	-	1	NA	NA	NA	136	NM_001033380	319622	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	0.075000	0.696517	
mm_145281.1	chr18	53181774	53181974	+	1	NA	NA	NA	5509	NM_026386	67804	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.000000	0.308458	
mm_143428.1	chr17	70850963	70851163	-	1	NA	NA	NA	147	NM_009372	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.030000	0.557214	
mm_109316.1	chr12	109561128	109561328	+	1	NA	NA	NA	-2464	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.010000	0.462687	
mm_148347.1	chr18	84675207	84675407	-	1	NA	NA	NA	6752	NM_001289531	66054	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.005000	0.477612	
mm_36399.1	chr4	77822818	77823018	-	1	NA	NA	NA	388977	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.358209	
mm_128171.1	chr15	34442853	34443053	-	1	NA	NA	NA	272	NM_009083	19946	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	0.070000	0.572139	
mm_101255.1	chr11	20831112	20831312	-	1	NA	NA	NA	-104	NM_173752	216551	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.125000	0.741294	-2(GCCTTTAAATGC,+,0.00),-2(GCCTTTAAATGC,-,0.00)
mm_5769.1	chr1	51466011	51466211	-	1	NA	NA	NA	12288	NM_028696	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.000000	0.293532	
mm_147411.1	chr18	44828815	44829015	-	1	NA	NA	NA	250	NM_001163013	240255	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	0.095000	0.671642	
mm_30652.1	chr4	8842613	8842813	+	1	NA	NA	NA	152307	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.010000	0.447761	
mm_13789.1	chr2	118829925	118830125	+	1	NA	NA	NA	16022	NM_026412	51944	Mm.252695	NM_026412	ENSMUSG00000027331	Knstrn	1700025D04Rik|C15orf23|D2Ertd750e|SKAP|Traf4af1	kinetochore-localized astrin/SPAG5 binding	protein-coding	0.005000	0.398010	
mm_126604.1	chr15	82456242	82456442	+	1	NA	NA	NA	3965	NM_010006	13105	Mm.226708	NM_010006	ENSMUSG00000068086	Cyp2d9	Cyp2d|P450-2D	cytochrome P450, family 2, subfamily d, polypeptide 9	protein-coding	0.010000	0.562189	
mm_65936.1	chr7	30360321	30360521	-	1	NA	NA	NA	2351	NM_175478	233067	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	0.065000	0.631841	
mm_114014.1	chr13	52610807	52611007	+	1	NA	NA	NA	14025	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.035000	0.567164	
mm_131433.1	chr16	15887355	15887555	+	1	NA	NA	NA	169	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.090000	0.691542	
mm_35154.1	chr4	12147679	12147879	-	1	NA	NA	NA	7662	NM_028226	72397	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	0.000000	0.472637	
mm_10898.1	chr2	25272381	25272581	+	1	NA	NA	NA	15	NM_175300	99152	Mm.291624	NM_175300	ENSMUSG00000026965	Anapc2	9230107K09Rik|AL024279|Apc2|Emi4|Imi4|mKIAA1406	anaphase promoting complex subunit 2	protein-coding	0.140000	0.696517	
mm_122419.1	chr14	41185094	41185294	-	1	NA	NA	NA	4	NM_009160	20390	Mm.1321	NM_009160	ENSMUSG00000021795	Sftpd	AI573415|SP-D|Sfpd|Sftp4	surfactant associated protein D	protein-coding	0.005000	0.477612	-2(GCATAAATAGCC,+,0.00)
mm_75721.1	chr8	69077161	69077361	-	1	NA	NA	NA	-11475	NM_007509	11966	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0.055000	0.517413	
mm_70978.1	chr8	27174721	27174921	+	1	NA	NA	NA	-175	NM_001080813	75767	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.045000	0.562189	
mm_41374.1	chr5	90703119	90703319	+	1	NA	NA	NA	-56079	NM_009141	20311	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0.005000	0.422886	-48(ACCCTTTAAAGG,-,0.00),-47(CCCTTTAAAGGC,+,0.00),-47(CCCTTTAAAGGC,-,0.00),-46(CCTTTAAAGGCT,+,0.00)
mm_97580.1	chr11	78944654	78944854	+	1	NA	NA	NA	19463	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.542289	
mm_12728.1	chr2	78868702	78868902	+	1	NA	NA	NA	-245	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.150000	0.815920	
mm_8734.1	chr1	160206095	160206295	-	1	NA	NA	NA	6697	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0.010000	0.422886	
mm_160907.1	chr11	78115526	78115726	+	1	NA	NA	NA	20953	NM_145430	216971	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0.060000	0.691542	
mm_87240.1	chr10	40883527	40883727	+	1	NA	NA	NA	93	NM_031877	83767	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	0.070000	0.646766	
mm_89546.1	chr10	94576119	94576319	+	1	NA	NA	NA	-44	NM_177026	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.015000	0.552239	
mm_108218.1	chr12	77060215	77060415	+	1	NA	NA	NA	-98067	NM_001146176	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.030000	0.512438	13(CCGCATAAAGGC,-,0.00)
mm_89754.1	chr10	99269875	99270075	+	1	NA	NA	NA	6744	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.015000	0.393035	37(CCTTTTATAATT,+,0.00)
mm_28538.1	chr3	92764963	92765163	-	1	NA	NA	NA	2	NM_026335	67718	Mm.23784	NM_026335	ENSMUSG00000049593	Lce1h	2310066F03Rik|AI426284|Sprrl9	late cornified envelope 1H	protein-coding	0.005000	0.522388	
mm_41483.1	chr5	91987375	91987575	+	1	NA	NA	NA	2	NM_001177577	381651	Mm.332494	NM_001177577	ENSMUSG00000096035	Gm1045	Gm1045-a|Gm1045-b	predicted gene 1045	protein-coding	0.005000	0.532338	-32(CTCCTTTAAAGC,-,0.00),-31(TCCTTTAAAGCA,+,0.00),-30(CCTTTAAAGCAG,+,0.00)
mm_40479.1	chr5	54050119	54050319	+	1	NA	NA	NA	51696	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.010000	0.422886	
mm_148959.1	chr19	7417518	7417718	+	1	NA	NA	NA	-7	NM_175381	108899	Mm.386838	NM_175381	ENSMUSG00000053080	2700081O15Rik	AI255177|AI848741|AW742297	RIKEN cDNA 2700081O15 gene	protein-coding	0.130000	0.741294	-53(AGCCCTTAAAGG,-,0.00),-52(GCCCTTAAAGGA,-,0.00),-51(CCCTTAAAGGAG,+,0.00)
mm_169774.1	chr1	60704135	60704335	+	1	NA	NA	NA	-42153	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.005000	0.472637	
mm_35582.1	chr4	41741189	41741389	-	1	NA	NA	NA	70	NM_001286540	18391	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0.105000	0.656716	
mm_97802.1	chr11	82956499	82956699	+	1	NA	NA	NA	4082	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.025000	0.462687	-57(CCATTTAGACGA,+,0.00)
mm_76401.1	chr8	84845836	84846036	-	1	NA	NA	NA	995	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.040000	0.532338	
mm_171691.1	chr4	65823455	65823655	+	1	NA	NA	NA	218569	NM_001161782	69807	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0.045000	0.601990	
mm_67254.1	chr7	75587800	75588000	-	1	NA	NA	NA	132366	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.015000	0.492537	
mm_20614.1	chr2	131855045	131855245	-	1	NA	NA	NA	4602	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	0.000000	0.512438	
mm_111966.1	chr12	109615494	109615694	-	1	NA	NA	NA	-2664	NR_029918	723854		NR_029918	ENSMUSG00000065433	Mir370	Mirn370|mir-370|mmu-mir-370	microRNA 370	ncRNA	0.020000	0.532338	
mm_2573.1	chr1	118481370	118481570	+	1	NA	NA	NA	-22205	NR_027901	68204	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.015000	0.482587	-48(TCATTTAAAGGC,+,0.00),5(CAGCTTTAAAGG,-,0.00),6(AGCTTTAAAGGC,-,0.00),7(GCTTTAAAGGCA,+,0.00)
mm_150810.1	chr19	44386061	44386261	+	1	NA	NA	NA	21548	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.000000	0.507463	-83(GCCTCTAAAAGT,-,0.00),-82(CCTCTAAAAGTC,+,0.00)
mm_65061.1	chr7	18821505	18821705	-	1	NA	NA	NA	-14	NM_007677	26437	Mm.302844	NM_007677	ENSMUSG00000004540	Psg17	Cea-2|Cea2|mmCGM5	pregnancy specific glycoprotein 17	protein-coding	0.005000	0.472637	
mm_16154.1	chr2	172370551	172370751	+	1	NA	NA	NA	-81	NM_011497	20878	Mm.249363	NM_011497	ENSMUSG00000027496	Aurka	AIRK1|ARK-1|AU019385|AW539821|Ark1|Aurora-A|Ayk1|IAK|IAK1|Stk6	aurora kinase A	protein-coding	0.095000	0.606965	
mm_70213.1	chr7	144931271	144931471	-	1	NA	NA	NA	764	NR_039539	100628615		NR_039539	ENSMUSG00000092633	Mir3962	mmu-mir-3962|mu-mir-3962	microRNA 3962	ncRNA	0.000000	0.437811	-4(GCTTTTAAACAC,+,0.00)
mm_145453.1	chr18	60223233	60223433	+	1	NA	NA	NA	11256	NM_001033767	240327	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.005000	0.457711	
mm_128546.1	chr15	55084004	55084204	-	1	NA	NA	NA	6374	NM_183089	72107	Mm.486550	NM_183089	ENSMUSG00000022422	Dscc1	2010006I05Rik|2600005O03Rik|Dcc1	DNA replication and sister chromatid cohesion 1	protein-coding	0.005000	0.452736	
mm_30027.1	chr3	135674513	135674713	-	1	NA	NA	NA	16934	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.000000	0.422886	
mm_70.1	chr1	6665920	6666120	+	1	NA	NA	NA	-64031	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.005000	0.412935	
mm_89151.1	chr10	86022131	86022331	+	1	NA	NA	NA	77	NM_001347151	69754	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	0.110000	0.736318	
mm_46566.1	chr5	107168436	107168636	-	1	NA	NA	NA	121059	NM_011578	21814	Mm.200775	NM_011578	ENSMUSG00000029287	Tgfbr3	1110036H20Rik|AU015626|AW215636|TBRIII	transforming growth factor, beta receptor III	protein-coding	0.015000	0.378109	
mm_82615.1	chr9	21769773	21769973	-	1	NA	NA	NA	-9587	NM_026282	67629	Mm.295642	NM_026282	ENSMUSG00000074476	Spc24	2410030K01Rik|AV109292|Spbc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	0.050000	0.621891	
mm_77150.1	chr8	111643787	111643987	-	1	NA	NA	NA	444	NM_011742	22640	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0.115000	0.756219	
mm_80551.1	chr9	82976073	82976273	+	1	NA	NA	NA	-684	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.045000	0.402985	
mm_161695.1	chr17	23745785	23745985	-	1	NA	NA	NA	-56	NM_028416	73016	Mm.221319	NM_028416	ENSMUSG00000040680	Kremen2	2900054E04Rik|Krm2	kringle containing transmembrane protein 2	protein-coding	0.055000	0.636816	
mm_9470.1	chr1	173333928	173334128	-	1	NA	NA	NA	-525	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	0.010000	0.532338	
mm_36697.1	chr4	96663959	96664159	-	1	NA	NA	NA	60	NM_010007	13109	Mm.12838	NM_010007	ENSMUSG00000052520	Cyp2j5	-	cytochrome P450, family 2, subfamily j, polypeptide 5	protein-coding	0.000000	0.487562	
mm_131856.1	chr16	23074635	23074835	+	1	NA	NA	NA	16435	NM_001102412	16644	Mm.2160	NM_023125	ENSMUSG00000022875	Kng1	Kng	kininogen 1	protein-coding	0.010000	0.472637	
mm_112417.1	chr13	4048878	4049078	+	1	NA	NA	NA	-10613	NM_134072	105387	Mm.26838	NM_134072	ENSMUSG00000033715	Akr1c14	9030611N15Rik|AW557061	aldo-keto reductase family 1, member C14	protein-coding	0.005000	0.348259	
mm_1388.1	chr1	67111781	67111981	+	1	NA	NA	NA	-11146	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.407960	74(TGCTTTAAAAAA,-,0.00)
mm_98459.1	chr11	94947621	94947821	+	1	NA	NA	NA	11497	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.025000	0.606965	
mm_137555.1	chr17	27655439	27655639	+	1	NA	NA	NA	-52	NM_011861	23969	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.160000	0.771144	
mm_81241.1	chr9	107935807	107936007	+	1	NA	NA	NA	-13	NM_145621	235604	Mm.274540	NM_145621	ENSMUSG00000032936	Camkv	1G5|BB074618|BC017634	CaM kinase-like vesicle-associated	protein-coding	0.120000	0.776119	
mm_103398.1	chr11	75437359	75437559	-	1	NA	NA	NA	2042	NM_008878	18816	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	0.005000	0.552239	
mm_135991.1	chr16	75130018	75130218	-	1	NA	NA	NA	455943	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.000000	0.303483	
mm_90586.1	chr10	128269234	128269434	+	1	NA	NA	NA	-1242	NM_019963	20847	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	0.010000	0.582090	
mm_31455.1	chr4	48662295	48662495	+	1	NA	NA	NA	-1119	NM_026509	68016	Mm.133444	NM_026509	ENSMUSG00000028348	Murc	2310039E09Rik	muscle-related coiled-coil protein	protein-coding	0.010000	0.363184	
mm_19414.1	chr2	91710454	91710654	-	1	NA	NA	NA	38	NM_145528	51897	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	0.065000	0.537313	
mm_44462.1	chr5	22589561	22589761	-	1	NA	NA	NA	39248	NR_102315	320719	Mm.459265	NR_102315	ENSMUSG00000097207	6030443J06Rik	1700030G06Rik	RIKEN cDNA 6030443J06 gene	ncRNA	0.000000	0.487562	
mm_116786.1	chr13	53370162	53370362	-	1	NA	NA	NA	7099	NM_009269	268656	Mm.240336	NM_009269	ENSMUSG00000021468	Sptlc1	AW552086|C77762|E030036H05|Lcb1	serine palmitoyltransferase, long chain base subunit 1	protein-coding	0.020000	0.542289	
mm_84858.1	chr9	78537585	78537785	-	1	NA	NA	NA	50360	NM_172773	235504	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.005000	0.328358	
mm_93699.1	chr10	118011852	118012052	-	1	NA	NA	NA	86493	NR_045342	71067	Mm.410793	NR_045342		4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0.020000	0.398010	59(CTTTTTATAGCC,+,0.00)
mm_94495.1	chr11	7063360	7063560	+	1	NA	NA	NA	-29	NM_009622	432530	Mm.259733	NM_009622	ENSMUSG00000020431	Adcy1	AC1|D11Bwg1392e|I-AC|brl|mKIAA4070	adenylate cyclase 1	protein-coding	0.220000	0.900498	
mm_166737.1	chr6	123260130	123260330	-	1	NA	NA	NA	-1877	NM_001163161	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.000000	0.447761	
mm_156798.1	chrX	162901668	162901868	+	1	NA	NA	NA	173	NM_018737	55936	Mm.2065	NM_018737	ENSMUSG00000031360	Ctps2	A830031M15Rik|AI326475|Ctpsh	cytidine 5'-triphosphate synthase 2	protein-coding	0.055000	0.671642	
mm_76067.1	chr8	78437233	78437433	-	1	NA	NA	NA	-681	NM_138944	18997	Mm.234261	NM_138944	ENSMUSG00000031688	Pou4f2	Brn-3.2|Brn-3b|Brn3b|Pou4f-rs1|mBrn3-3R	POU domain, class 4, transcription factor 2	protein-coding	0.065000	0.646766	
mm_32815.1	chr4	117251891	117252091	+	1	NA	NA	NA	40	NM_001285815	68777	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	0.115000	0.736318	
mm_114486.1	chr13	69617336	69617536	+	1	NA	NA	NA	5420	NM_145354	28114	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	0.015000	0.497512	
mm_36313.1	chr4	69925810	69926010	-	1	NA	NA	NA	484525	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.040000	0.532338	
mm_77477.1	chr8	122443336	122443536	-	1	NA	NA	NA	-14	NR_028354	192156	Mm.28146	NM_138656	ENSMUSG00000006517	Mvd	C78718|Mpd	mevalonate (diphospho) decarboxylase	protein-coding	0.055000	0.567164	
mm_22758.1	chr3	19989042	19989242	+	1	NA	NA	NA	32088	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.005000	0.442786	
mm_150667.1	chr19	42041536	42041736	+	1	NA	NA	NA	-4215	NM_026152	67432	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding	0.010000	0.522388	
mm_109026.1	chr12	103947029	103947229	+	1	NA	NA	NA	9768	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	0.020000	0.492537	
mm_99514.1	chr11	103104681	103104881	+	1	NA	NA	NA	3093	NM_025988	67131	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	0.015000	0.567164	
mm_156825.1	chrX	164162081	164162281	+	1	NA	NA	NA	21701	NM_027286	70008	Mm.13451	NM_027286	ENSMUSG00000015405	Ace2	2010305L05Rik	angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	protein-coding	0.005000	0.407960	
mm_34943.1	chr4	155869482	155869682	+	1	NA	NA	NA	15	NM_028020	71957	Mm.475640	NM_028020	ENSMUSG00000029034	Cpsf3l	2410006F12Rik|AU044035	cleavage and polyadenylation specific factor 3-like	protein-coding	0.155000	0.711443	
mm_168818.1	chr12	22030777	22030977	-	1	NA	NA	NA	125769	NR_136920	100043416		NM_001004167	ENSMUSG00000093846	Gm4425	EG432637|Gm5433	KRAB-domain protein pseudogene	pseudo	0.140000	0.756219	
mm_36880.1	chr4	107178267	107178467	-	1	NA	NA	NA	-1	NM_025617	66526	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0.080000	0.626866	
mm_170029.1	chr17	21920715	21920915	-	1	NA	NA	NA	-10889	NM_001256493	70081	Mm.245648	NM_001256493	ENSMUSG00000078546	Zfp995	2210404O09Rik	zinc finger protein 995	protein-coding	0.020000	0.477612	
mm_139956.1	chr17	71315350	71315550	+	1	NA	NA	NA	-4485	NM_145158	246707	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.000000	0.542289	
mm_24601.1	chr3	93445308	93445508	+	1	NA	NA	NA	3078	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.065000	0.577114	
mm_159588.1	chr4	123233286	123233486	+	1	NA	NA	NA	-170	NM_013905	56198	Mm.103615	NM_013905	ENSMUSG00000032744	Heyl	Hey3|Hrt3|bHLHb33|hesr3	hairy/enhancer-of-split related with YRPW motif-like	protein-coding	0.010000	0.517413	
mm_84150.1	chr9	59486269	59486469	-	1	NA	NA	NA	5	NM_019927	23806	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	0.170000	0.761194	
mm_86893.1	chr10	22301856	22302056	+	1	NA	NA	NA	-4764	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.000000	0.457711	
mm_102556.1	chr11	61378227	61378427	-	1	NA	NA	NA	-252	NM_026183	67473	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	0.045000	0.527363	
mm_152979.1	chr19	29488449	29488649	-	1	NA	NA	NA	33438	NR_015567	77779	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.020000	0.492537	
mm_63361.1	chr7	127021343	127021543	+	1	NA	NA	NA	-232	NM_001102563	69017	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.045000	0.626866	
mm_44200.1	chr5	3647926	3648126	-	1	NA	NA	NA	-90	NM_026033	67210	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|ENSMUSG00000073241|Odag	GATA zinc finger domain containing 1	protein-coding	0.080000	0.696517	
mm_51771.1	chr6	88060827	88061027	+	1	NA	NA	NA	-15657	NM_009005	19349	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.005000	0.437811	
mm_69877.1	chr7	141625203	141625403	-	1	NA	NA	NA	4602	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.005000	0.532338	
mm_47701.1	chr5	129878914	129879114	-	1	NA	NA	NA	69	NM_011079	18682	Mm.3159	NM_011079	ENSMUSG00000025537	Phkg1	Phkg	phosphorylase kinase gamma 1	protein-coding	0.010000	0.522388	
mm_171339.1	chr4	102875685	102875885	-	1	NA	NA	NA	-110594	NM_001163767	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.030000	0.487562	
mm_7951.1	chr1	133915214	133915414	-	1	NA	NA	NA	6087	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.030000	0.606965	
mm_151226.1	chr19	53717798	53717998	+	1	NA	NA	NA	40592	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.010000	0.467662	
mm_86862.1	chr10	21992125	21992325	+	1	NA	NA	NA	2	NM_001161849	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.020000	0.487562	
mm_466.1	chr1	36332606	36332806	+	1	NA	NA	NA	16052	NR_105863	102465541		NR_105863	ENSMUSG00000098680	Mir6898	Gm27816|mmu-mir-6898	microRNA 6898	ncRNA	0.015000	0.452736	
mm_108930.1	chr12	101083628	101083828	+	1	NA	NA	NA	-26	NM_001160214	68734	Mm.87077	NM_211355	ENSMUSG00000041846	Smek1	1110034C04Rik|BC064465|Ppp4r3a|mKIAA2010	SMEK homolog 1, suppressor of mek1 (Dictyostelium)	protein-coding	0.130000	0.676617	
mm_6519.1	chr1	74415049	74415249	-	1	NA	NA	NA	5765	NM_009509	22349	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.015000	0.537313	
mm_32138.1	chr4	99240436	99240636	+	1	NA	NA	NA	46389	NM_001145967	242557	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.005000	0.358209	
mm_155478.1	chrX	73673065	73673265	+	1	NA	NA	NA	32	NM_001142809	102857	Mm.274553	NM_133987	ENSMUSG00000019558	Slc6a8	AA589632|CRT|CRTR|CT1|CTR5|Creat	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	protein-coding	0.100000	0.691542	
mm_120547.1	chr14	67398746	67398946	+	1	NA	NA	NA	-1104	NR_045961	73977	Mm.414915	NR_045961	ENSMUSG00000093472	4930438E09Rik	-	RIKEN cDNA 4930438E09 gene	ncRNA	0.025000	0.502488	
mm_3268.1	chr1	136415213	136415413	+	1	NA	NA	NA	42	NM_026500	67997	Mm.385462	NM_026500	ENSMUSG00000026404	Ddx59	1210002B07Rik|4833411G06Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	protein-coding	0.135000	0.741294	
mm_162844.1	chr10	86300579	86300779	+	1	NA	NA	NA	267	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.090000	0.631841	
mm_89949.1	chr10	111286025	111286225	+	1	NA	NA	NA	-12554	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.000000	0.308458	
mm_160331.1	chr8	9770689	9770889	-	1	NA	NA	NA	234	NM_173446	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding	0.040000	0.597015	
mm_22676.1	chr3	15000831	15001031	+	1	NA	NA	NA	29730	NR_040550	77127	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0.010000	0.532338	
mm_141131.1	chr17	26201370	26201570	-	1	NA	NA	NA	-120	NM_008113	14570	Mm.1383	NM_008113	ENSMUSG00000073433	Arhgdig	Gdi5|RIP2|Rho-GDI-3|Rho-GDI2	Rho GDP dissociation inhibitor (GDI) gamma	protein-coding	0.065000	0.721393	
mm_160203.1	chr7	81692806	81693006	-	1	NA	NA	NA	59	NM_001164087	26557	Mm.228	NM_011983	ENSMUSG00000025813	Homer2	9330120H11Rik|AW539445|CPD|Vesl-2	homer scaffolding protein 2	protein-coding	0.030000	0.527363	
mm_41047.1	chr5	86093171	86093371	+	1	NA	NA	NA	21525	NM_001310639	56792	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.010000	0.348259	
mm_4517.1	chr1	174751549	174751749	+	1	NA	NA	NA	170170	NM_011825	23893	Mm.25760	NM_011825	ENSMUSG00000050069	Grem2	Gremlin2|Prdc	gremlin 2, DAN family BMP antagonist	protein-coding	0.000000	0.378109	82(GCTTTTATGCAC,+,0.00)
mm_79154.1	chr9	47745820	47746020	+	1	NA	NA	NA	72288	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.010000	0.477612	
mm_68624.1	chr7	118119130	118119330	-	1	NA	NA	NA	-3083	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0.005000	0.467662	-59(GGCTTTTAGAGC,-,0.00),-58(GCTTTTAGAGCA,+,0.00)
mm_122869.1	chr14	54919750	54919950	-	1	NA	NA	NA	-6718	NM_021551	59049	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	0.020000	0.656716	
mm_120186.1	chr14	61492617	61492817	+	1	NA	NA	NA	29	NR_045714	75349	Mm.233613	NR_045714		4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	0.010000	0.497512	
mm_62234.1	chr7	98655735	98655935	+	1	NA	NA	NA	734	NM_172280	233545	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0.095000	0.671642	
mm_134640.1	chr16	21762800	21763000	-	1	NA	NA	NA	24934	NM_023737	74147	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0.025000	0.497512	
mm_102973.1	chr11	69671126	69671326	-	1	NA	NA	NA	1197	NM_144958	13681	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0.050000	0.577114	
mm_144519.1	chr18	24746548	24746748	+	1	NA	NA	NA	38025	NM_001289655	225288	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0.015000	0.467662	
mm_147380.1	chr18	43737074	43737274	-	1	NA	NA	NA	63	NM_009258	20730	Mm.272	NM_009258	ENSMUSG00000024503	Spink1	Spink3|p12	serine peptidase inhibitor, Kazal type 1	protein-coding	0.005000	0.457711	
mm_128658.1	chr15	59994859	59995059	-	1	NA	NA	NA	21659	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.015000	0.432836	
mm_96004.1	chr11	59505560	59505760	+	1	NA	NA	NA	7	NR_015585	74476	Mm.440257	NR_015585	ENSMUSG00000072893	4933439C10Rik	2610028M21Rik	RIKEN cDNA 4933439C10 gene	ncRNA	0.045000	0.597015	
mm_173023.1	chrX	103075974	103076174	+	1	NA	NA	NA	110590	NM_008671	17954	Mm.388694	NM_008671	ENSMUSG00000082229	Nap1l2	Bpx	nucleosome assembly protein 1-like 2	protein-coding	0.005000	0.527363	
mm_133719.1	chr16	93683104	93683304	+	1	NA	NA	NA	-15	NM_173047	109857	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	0.095000	0.691542	
mm_108489.1	chr12	83672636	83672836	+	1	NA	NA	NA	-15827	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.015000	0.398010	
mm_107886.1	chr12	70453002	70453202	+	1	NA	NA	NA	-52	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0.095000	0.706468	
mm_59419.1	chr7	27121825	27122025	+	1	NA	NA	NA	1970	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.035000	0.577114	
mm_148260.1	chr18	80869587	80869787	-	1	NA	NA	NA	64371	NM_001201569	50771	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	0.000000	0.308458	
mm_53684.1	chr6	142387142	142387342	+	1	NA	NA	NA	-1	NM_025872	66964	Mm.3676	NM_025872	ENSMUSG00000030245	Golt1b	2310061A22Rik|AA407874|AU024291|CGI-141	golgi transport 1B	protein-coding	0.160000	0.736318	
mm_111658.1	chr12	103235929	103236129	-	1	NA	NA	NA	6117	NM_133364	170952	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	0.005000	0.507463	
mm_70267.1	chr8	3587564	3587764	+	1	NA	NA	NA	214	NM_001347111	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.135000	0.716418	
mm_3265.1	chr1	136364905	136365105	+	1	NA	NA	NA	-18901	NM_001347110	67886	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	0.080000	0.686567	
mm_94185.1	chr10	128958850	128959050	-	1	NA	NA	NA	2038	NM_027853	71664	Mm.337232	NM_027853	ENSMUSG00000025347	Mettl7b	0610006F02Rik|AI266817	methyltransferase like 7B	protein-coding	0.020000	0.517413	
mm_100054.1	chr11	115180857	115181057	+	1	NA	NA	NA	6359	NM_025400	66176	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	0.015000	0.447761	-7(TTTTTTAAAGAG,+,0.00)
mm_133184.1	chr16	72662957	72663157	+	1	NA	NA	NA	-92	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.050000	0.587065	30(CCCCTTTAAAGG,-,0.00),31(CCCTTTAAAGGT,+,0.00),31(CCCTTTAAAGGT,-,0.00),32(CCTTTAAAGGTT,+,0.00)
mm_102927.1	chr11	69600576	69600776	-	1	NA	NA	NA	5284	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.005000	0.482587	
mm_136688.1	chr17	6828017	6828217	+	1	NA	NA	NA	-45337	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.090000	0.656716	
mm_13692.1	chr2	117120896	117121096	+	1	NA	NA	NA	-75	NM_001277256	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.155000	0.776119	
mm_21735.1	chr2	164769549	164769749	-	1	NA	NA	NA	-280	NM_026785	68612	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	0.070000	0.562189	-33(GACCATTAAAGG,-,0.00)
mm_106012.1	chr11	115871226	115871426	-	1	NA	NA	NA	-28813	NM_183259	66528	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	0.020000	0.601990	
mm_65401.1	chr7	25205857	25206057	-	1	NA	NA	NA	11768	NR_106015	102466794		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	0.030000	0.537313	
mm_119225.1	chr14	33250325	33250525	+	1	NA	NA	NA	33602	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.045000	0.557214	53(GCTTTAATGGTC,+,0.00)
mm_106271.1	chr11	117987091	117987291	-	1	NA	NA	NA	334	NM_133757	74451	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.085000	0.711443	
mm_51531.1	chr6	83188799	83188999	+	1	NA	NA	NA	2953	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.010000	0.487562	64(GCTTTTATATAC,+,0.00),66(TTTTATATACCC,+,0.00)
mm_105080.1	chr11	100822413	100822613	-	1	NA	NA	NA	57	NM_011489	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.035000	0.562189	-89(CCTTTTAGAAGG,+,0.00)
mm_85642.1	chr9	107655268	107655468	-	1	NA	NA	NA	12031	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.040000	0.611940	
mm_105629.1	chr11	106920526	106920726	-	1	NA	NA	NA	89	NM_025481	66313	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	0.150000	0.781095	
mm_149171.1	chr19	9083618	9083818	+	1	NA	NA	NA	4238	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.015000	0.472637	
mm_123055.1	chr14	55643642	55643842	-	1	NA	NA	NA	64	NM_028780	74140	Mm.132857	NM_028780	ENSMUSG00000002320	Tm9sf1	1200014D02Rik|AI893436|MP70	transmembrane 9 superfamily member 1	protein-coding	0.110000	0.706468	
mm_116136.1	chr13	28953598	28953798	-	1	NA	NA	NA	-16	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.050000	0.577114	
mm_124384.1	chr14	108913784	108913984	-	1	NA	NA	NA	355	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.060000	0.597015	
mm_136782.1	chr17	10496284	10496484	+	1	NA	NA	NA	40168	NR_077238	319750	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.035000	0.532338	
mm_150781.1	chr19	44294908	44295108	+	1	NA	NA	NA	1332	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.030000	0.542289	
mm_8900.1	chr1	163085559	163085759	-	1	NA	NA	NA	11	NM_030071	78258	Mm.78368	NM_030071	ENSMUSG00000071890	Mroh9	4921528O07Rik|Armc11	maestro heat-like repeat family member 9	protein-coding	0.000000	0.412935	
mm_58089.1	chr6	137169655	137169855	-	1	NA	NA	NA	-37	NM_001164212	232441	Mm.46233	NM_181988	ENSMUSG00000030222	Rerg	-	RAS-like, estrogen-regulated, growth-inhibitor	protein-coding	0.090000	0.701493	
mm_26654.1	chr3	154597050	154597250	+	1	NA	NA	NA	-52	NM_172474	209584	Mm.347513	NM_172474	ENSMUSG00000047583	Tyw3	5230400J09Rik	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	protein-coding	0.065000	0.611940	
mm_151344.1	chr19	55895410	55895610	+	1	NA	NA	NA	189	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.100000	0.701493	
mm_100360.1	chr11	118476727	118476927	+	1	NA	NA	NA	-133	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.080000	0.651741	
mm_62080.1	chr7	92932936	92933136	+	1	NA	NA	NA	57783	NM_028243	72461	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.030000	0.487562	
mm_107554.1	chr12	41253599	41253799	+	1	NA	NA	NA	229609	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.005000	0.442786	
mm_59557.1	chr7	28075242	28075442	+	1	NA	NA	NA	4106	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.030000	0.522388	
mm_120140.1	chr14	60377592	60377792	+	1	NA	NA	NA	-594	NM_028113	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.030000	0.507463	
mm_102254.1	chr11	55151608	55151808	-	1	NA	NA	NA	-2	NM_172258	215332	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0.010000	0.552239	
mm_40934.1	chr5	76657559	76657759	+	1	NA	NA	NA	65945	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.165000	0.796020	
mm_86063.1	chr9	114640097	114640297	-	1	NA	NA	NA	3	NM_153585	78893	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	0.095000	0.641791	
mm_43423.1	chr5	136057027	136057227	+	1	NA	NA	NA	-140	NM_027158	69665	Mm.75713	NM_027158	ENSMUSG00000006143	Upk3bl	2310043J07Rik	uroplakin 3B-like	protein-coding	0.010000	0.587065	
mm_102448.1	chr11	59787176	59787376	-	1	NA	NA	NA	-54	NR_110894	194908	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	0.080000	0.671642	
mm_68098.1	chr7	102007658	102007858	-	1	NA	NA	NA	10397	NM_010531	16068	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.005000	0.402985	
mm_149274.1	chr19	10605447	10605647	+	1	NA	NA	NA	-78	NM_015735	13194	Mm.289915	NM_015735	ENSMUSG00000024740	Ddb1	127kDa|AA408517|p127-Ddb1	damage specific DNA binding protein 1	protein-coding	0.075000	0.681592	
mm_164908.1	chr18	70472456	70472656	+	1	NA	NA	NA	-16	NM_001289648	170461	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	0.085000	0.646766	
mm_55337.1	chr6	56362271	56362471	-	1	NA	NA	NA	21	NM_001159952	18575	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0.025000	0.626866	
mm_121483.1	chr14	121057535	121057735	+	1	NA	NA	NA	22061	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.005000	0.432836	
mm_143309.1	chr17	66051537	66051737	-	1	NA	NA	NA	25409	NM_001025572	106585	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	0.000000	0.482587	
mm_92206.1	chr10	68137268	68137468	-	1	NA	NA	NA	141358	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.015000	0.452736	
mm_111764.1	chr12	104008645	104008845	-	1	NA	NA	NA	4907	NM_027997	71907	Mm.326723	NM_027997	ENSMUSG00000058260	Serpina9	2310014L03Rik|AW049635|Centerin	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9	protein-coding	0.005000	0.512438	
mm_155768.1	chrX	96240390	96240590	+	1	NA	NA	NA	564	NR_030718	100038363	Mm.30815	NR_030718	ENSMUSG00000078122	F630028O10Rik	ENSMUSG00000065522|Gm14924|OTTMUSG00000018496|mir-223	RIKEN cDNA F630028O10 gene	ncRNA	0.000000	0.383085	86(GAATTTAAAAGG,-,0.00)
mm_98619.1	chr11	95843746	95843946	+	1	NA	NA	NA	601	NM_001284397	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.010000	0.512438	
mm_165668.1	chr3	88616331	88616531	+	1	NA	NA	NA	224	NM_001198911	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.020000	0.542289	
mm_161344.1	chr14	52350111	52350311	-	1	NA	NA	NA	-167	NM_001012269	258008	Mm.377327	NM_001012269	ENSMUSG00000095030	Olfr1513	MOR223-10|MOR223-7P	olfactory receptor 1513	protein-coding	0.000000	0.492537	
mm_65890.1	chr7	29953969	29954169	-	1	NA	NA	NA	-2176	NM_178384	72723	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77	zinc finger protein 74	protein-coding	0.060000	0.601990	
mm_143044.1	chr17	56830993	56831193	-	1	NA	NA	NA	-85	NM_027787	19725	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0.155000	0.820896	
mm_137640.1	chr17	28522642	28522842	+	1	NA	NA	NA	-8119	NM_026290	67645	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.055000	0.577114	
mm_158409.1	chrX	136957914	136958114	-	1	NA	NA	NA	-35	NM_001080967	100034363	Mm.381904	NM_001080967	ENSMUSG00000089996	Tmsb15b2	Tb15c	thymosin beta 15b2	protein-coding	0.035000	0.542289	
mm_69152.1	chr7	127137717	127137917	-	1	NA	NA	NA	6	NR_110337	20737	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	0.005000	0.582090	
mm_55650.1	chr6	72366871	72367071	-	1	NA	NA	NA	1	NM_001331167	66510	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0.005000	0.447761	
mm_100673.1	chr11	3371258	3371458	-	1	NA	NA	NA	34	NM_173053	16886	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.030000	0.606965	
mm_84048.1	chr9	58102189	58102389	-	1	NA	NA	NA	8	NM_001311085	382077	Mm.335193	NM_029212	ENSMUSG00000037716	Ccdc33	4930535E21Rik|Gm1117|Tzip1	coiled-coil domain containing 33	protein-coding	0.010000	0.522388	
mm_162323.1	chr1	39608509	39608709	-	1	NA	NA	NA	-31262	NM_001033135	67702	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4|OTTMUSG00000026591	ring finger protein 149	protein-coding	0.015000	0.482587	
mm_129451.1	chr15	78561378	78561578	-	1	NA	NA	NA	11305	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.025000	0.592040	
mm_123503.1	chr14	66232202	66232402	-	1	NA	NA	NA	-18750	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.005000	0.507463	
mm_158083.1	chrX	101266165	101266365	-	1	NA	NA	NA	1990	NM_001308535	16186	Mm.2923	NM_013563	ENSMUSG00000031304	Il2rg	CD132|[g]c|gamma(c)|gc|p64	interleukin 2 receptor, gamma chain	protein-coding	0.020000	0.492537	
mm_150282.1	chr19	34290593	34290793	+	1	NA	NA	NA	34	NM_001146708	14102	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	0.040000	0.641791	
mm_25196.1	chr3	103771832	103772032	+	1	NA	NA	NA	19343	NM_001301306	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.020000	0.472637	
mm_28025.1	chr3	83046600	83046800	-	1	NA	NA	NA	3163	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.025000	0.552239	
mm_9905.1	chr1	187199606	187199806	-	1	NA	NA	NA	15740	NM_029067	74717	Mm.250430	NM_028848	ENSMUSG00000026611	Spata17	1700065F16Rik|4930504I07Rik|4930513F16Rik|MSRG-11	spermatogenesis associated 17	protein-coding	0.000000	0.492537	
mm_114841.1	chr13	92611074	92611274	+	1	NA	NA	NA	36	NM_172588	218442	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.120000	0.716418	
mm_36486.1	chr4	83052066	83052266	-	1	NA	NA	NA	1	NM_001198811	329872	Mm.242337	NM_177863	ENSMUSG00000059049	Frem1	BC037594|D430009N09|D630008K06|crf11|eye<m02Jus>|eyes2|heb|qbrick	Fras1 related extracellular matrix protein 1	protein-coding	0.025000	0.497512	
mm_53409.1	chr6	132569707	132569907	+	1	NA	NA	NA	-35	NM_011174	19131	Mm.425348	NM_011174	ENSMUSG00000059934	Prh1	MP2|Prp	proline rich protein HaeIII subfamily 1	protein-coding	0.005000	0.507463	-34(CTCCTTATAAAG,-,0.00),-32(CCTTATAAAGGC,+,0.00),-32(CCTTATAAAGGC,-,0.00)
mm_59429.1	chr7	27129659	27129859	+	1	NA	NA	NA	9804	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.040000	0.552239	
mm_96749.1	chr11	69884186	69884386	+	1	NA	NA	NA	-2192	NR_105889	102466208		NR_105889	ENSMUSG00000104996	Mir6924	mmu-mir-6924	microRNA 6924	ncRNA	0.005000	0.572139	
mm_80723.1	chr9	92309296	92309496	+	1	NA	NA	NA	19	NM_001033184	78459	Mm.179195	NM_001033184	ENSMUSG00000074139	1700057G04Rik	-	RIKEN cDNA 1700057G04 gene	protein-coding	0.005000	0.388060	
mm_76381.1	chr8	84840554	84840754	-	1	NA	NA	NA	11	NM_001297607	19358	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.120000	0.686567	
mm_44126.1	chr5	149636729	149636929	+	1	NA	NA	NA	-493	NM_001347534	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.045000	0.532338	
mm_43782.1	chr5	142401408	142401608	+	1	NA	NA	NA	11	NM_199068	17425	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf	forkhead box K1	protein-coding	0.180000	0.800995	
mm_985.1	chr1	58445475	58445675	+	1	NA	NA	NA	-89	NM_001285827	70225	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding	0.050000	0.567164	
mm_50036.1	chr6	41137556	41137756	+	1	NA	NA	NA	-102147	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.010000	0.537313	
mm_10961.1	chr2	25699941	25700141	+	1	NA	NA	NA	-33	NM_153558	227627	Mm.44630	NM_153558	ENSMUSG00000062061	Obp2a	BC027556|Lcn13	odorant binding protein 2A	protein-coding	0.005000	0.601990	
mm_18166.1	chr2	45102121	45102321	-	1	NA	NA	NA	8056	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.015000	0.472637	
mm_86320.1	chr9	122950883	122951083	-	1	NA	NA	NA	17	NM_025419	66202	Mm.268307	NM_025419	ENSMUSG00000032551	1110059G10Rik	-	RIKEN cDNA 1110059G10 gene	protein-coding	0.075000	0.557214	
mm_166514.1	chr6	14755230	14755430	-	1	NA	NA	NA	-56	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	0.005000	0.407960	-96(TCATATAAAAGG,-,0.00),-44(CTATTTATAGAG,+,0.00)
mm_72247.1	chr8	75058250	75058450	+	1	NA	NA	NA	24664	NM_011622	21968	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.020000	0.502488	
mm_172334.1	chr7	109519518	109519718	+	1	NA	NA	NA	423	NM_011975	26451	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	0.065000	0.606965	
mm_161503.1	chr15	96420537	96420737	-	1	NA	NA	NA	40206	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.025000	0.492537	
mm_2525.1	chr1	106860900	106861100	+	1	NA	NA	NA	-180	NM_009257	20724	Mm.268618	NM_009257	ENSMUSG00000067006	Serpinb5	1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 5	protein-coding	0.020000	0.517413	
mm_54382.1	chr6	31213695	31213895	-	1	NA	NA	NA	4679	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.015000	0.383085	
mm_159106.1	chr2	38712013	38712213	-	1	NA	NA	NA	121	NM_001316687	26423	Mm.31387	NM_139051	ENSMUSG00000026751	Nr5a1	Ad4BP|ELP|ELP-3|Ftz-F1|Ftzf1|SF-1|SF1|STF-1	nuclear receptor subfamily 5, group A, member 1	protein-coding	0.190000	0.835821	
mm_125845.1	chr15	74958813	74959013	+	1	NA	NA	NA	3807	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.020000	0.532338	
mm_128849.1	chr15	71728134	71728334	-	1	NA	NA	NA	-396	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding	0.085000	0.676617	
mm_149973.1	chr19	29067184	29067384	+	1	NA	NA	NA	-17	NR_045687	100503337	Mm.103412	NR_045687		Gm9895	ENSMUSG00000052976	predicted gene 9895	ncRNA	0.025000	0.557214	
mm_55439.1	chr6	67035436	67035636	-	1	NA	NA	NA	-1063	NR_040278	320172	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0.020000	0.477612	
mm_20790.1	chr2	144010747	144010947	-	1	NA	NA	NA	416	NM_133626	81910	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.175000	0.830846	
mm_134714.1	chr16	22895162	22895362	-	1	NA	NA	NA	-876	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.045000	0.522388	
mm_65507.1	chr7	25748341	25748541	-	1	NA	NA	NA	6260	NM_178089	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.025000	0.517413	
mm_7950.1	chr1	133915193	133915393	-	1	NA	NA	NA	6108	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.035000	0.611940	
mm_10819.1	chr2	24350909	24351109	+	1	NA	NA	NA	5638	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.005000	0.373134	
mm_170227.1	chr17	8147686	8147886	-	1	NA	NA	NA	2	NM_001083938	100037283	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	0.120000	0.741294	
mm_159513.1	chr4	58943656	58943856	+	1	NA	NA	NA	128	NM_001099323	100041581	Mm.463942	NM_001099323	ENSMUSG00000038630	Zkscan16	XM_143800|Zfp483	zinc finger with KRAB and SCAN domains 16	protein-coding	0.100000	0.661692	
mm_131989.1	chr16	25042245	25042445	+	1	NA	NA	NA	-17294	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.005000	0.432836	
mm_11851.1	chr2	45276960	45277160	+	1	NA	NA	NA	-163781	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.000000	0.442786	
mm_72790.1	chr8	86893925	86894125	+	1	NA	NA	NA	-8767	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.005000	0.363184	
mm_162259.1	chrX	169926906	169927106	+	1	NA	NA	NA	47387	NM_001290505	17318	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	0.025000	0.522388	
mm_20592.1	chr2	131164062	131164262	-	1	NA	NA	NA	-4081	NM_001311138	67326	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	0.010000	0.472637	
mm_170130.1	chr17	39847132	39847332	+	1	NA	NA	NA	4235	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.075000	0.527363	
mm_162128.1	chrX	73096919	73097119	-	1	NA	NA	NA	76	NM_001110784	22445	Mm.475098	NM_011726	ENSMUSG00000057836	Xlr3a	Xlr3	X-linked lymphocyte-regulated 3A	protein-coding	0.045000	0.611940	
mm_151919.1	chr19	5799751	5799951	-	1	NA	NA	NA	2821	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.020000	0.462687	
mm_68086.1	chr7	101870704	101870904	-	1	NA	NA	NA	-16	NM_001252552	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.005000	0.517413	-14(AGCCATAAAGGC,-,0.00)
mm_135834.1	chr16	58523467	58523667	-	1	NA	NA	NA	-255	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.065000	0.641791	
mm_48177.1	chr5	137307581	137307781	-	1	NA	NA	NA	-7	NM_001109909	83701	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	0.095000	0.597015	
mm_60405.1	chr7	44475871	44476071	+	1	NA	NA	NA	5624	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.477612	
mm_171711.1	chr4	79327596	79327796	+	1	NA	NA	NA	733649	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA	0.050000	0.507463	
mm_8203.1	chr1	138123438	138123638	-	1	NA	NA	NA	51588	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.005000	0.427861	
mm_92074.1	chr10	62651081	62651281	-	1	NA	NA	NA	17	NM_053183	94213	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	0.115000	0.696517	
mm_138669.1	chr17	35879735	35879935	+	1	NA	NA	NA	57	NM_026987	69192	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	0.145000	0.711443	
mm_42222.1	chr5	113364844	113365044	+	1	NA	NA	NA	7650	NM_001012726	503692	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	0.020000	0.402985	
mm_30357.1	chr3	151764093	151764293	-	1	NA	NA	NA	-1302	NM_031367	15061	Mm.219544	NM_031367	ENSMUSG00000039146	Ifi44l	H-28|H28|H28-1|NS1178	interferon-induced protein 44 like	protein-coding	0.000000	0.388060	
mm_142935.1	chr17	56005462	56005662	-	1	NA	NA	NA	44	NM_145934	106766	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	0.015000	0.597015	
mm_133848.1	chr16	96205763	96205963	+	1	NA	NA	NA	5393	NM_015825	50795	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0.015000	0.502488	-43(GTCTTTTAAGGG,-,0.00),-42(TCTTTTAAGGGA,+,0.00)
mm_54068.1	chr6	14754495	14754695	-	1	NA	NA	NA	679	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	0.010000	0.393035	
mm_42975.1	chr5	123148163	123148363	+	1	NA	NA	NA	6070	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.030000	0.691542	
mm_73521.1	chr8	107503092	107503292	+	1	NA	NA	NA	-48052	NR_029553	387158		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0.010000	0.462687	-36(ATCTTTTAAGGG,-,0.00),-35(TCTTTTAAGGGT,+,0.00),56(TCTTTTAAGGTA,+,0.00)
mm_33726.1	chr4	134093439	134093639	+	1	NA	NA	NA	1534	NM_013706	23833	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	0.030000	0.527363	
mm_45285.1	chr5	64959951	64960151	-	1	NA	NA	NA	-17	NM_011604	21899	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0.035000	0.422886	
mm_153243.1	chr19	36119262	36119462	-	1	NA	NA	NA	482	NM_013468	107765	Mm.10279	NM_013468	ENSMUSG00000024803	Ankrd1	Alrp|CARP|Crap|MARP1	ankyrin repeat domain 1 (cardiac muscle)	protein-coding	0.015000	0.487562	
mm_138452.1	chr17	35135764	35135964	+	1	NA	NA	NA	150	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.060000	0.587065	
mm_118308.1	chr13	113101132	113101332	-	1	NA	NA	NA	-251	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.010000	0.442786	
mm_156560.1	chrX	151803245	151803445	+	1	NA	NA	NA	63	NM_021523	59026	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	0.120000	0.631841	
mm_74645.1	chr8	13350909	13351109	-	1	NA	NA	NA	12205	NM_009361	21781	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	0.005000	0.547264	
mm_55645.1	chr6	72360938	72361138	-	1	NA	NA	NA	1394	NR_138581	66510	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0.030000	0.502488	
mm_37900.1	chr4	132727534	132727734	-	1	NA	NA	NA	4912	NM_201368	381560	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	0.015000	0.507463	
mm_150699.1	chr19	42255633	42255833	+	1	NA	NA	NA	-6	NM_027694	71146	Mm.329851	NM_027694	ENSMUSG00000042532	Golga7b	4933417O08Rik|AI839934	golgi autoantigen, golgin subfamily a, 7B	protein-coding	0.120000	0.810945	
mm_2974.1	chr1	133092192	133092392	+	1	NA	NA	NA	-38874	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.030000	0.537313	
mm_17085.1	chr2	22987469	22987669	-	1	NA	NA	NA	52672	NM_001077192	11308	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.005000	0.278607	
mm_123957.1	chr14	74806423	74806623	-	1	NA	NA	NA	74226	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.005000	0.402985	
mm_98980.1	chr11	98740565	98740765	+	1	NA	NA	NA	-1120	NM_178060	21833	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.040000	0.631841	
mm_87270.1	chr10	41809856	41810056	+	1	NA	NA	NA	-88	NM_026643	103268	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	0.115000	0.671642	
mm_195.1	chr1	15805528	15805728	+	1	NA	NA	NA	-18	NM_009352	21749	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	0.110000	0.641791	
mm_22905.1	chr3	30864190	30864390	+	1	NA	NA	NA	8340	NM_001286994	71862	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.010000	0.502488	-3(CTGCATAAAAGA,-,0.00)
mm_12360.1	chr2	69749824	69750024	+	1	NA	NA	NA	26836	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.050000	0.522388	
mm_65079.1	chr7	19165044	19165244	-	1	NA	NA	NA	983	NM_001080815	381853	Mm.333633	NM_001080815	ENSMUSG00000030406	Gipr	GIP-R|Gm1081|Gm160	gastric inhibitory polypeptide receptor	protein-coding	0.045000	0.611940	
mm_57165.1	chr6	122801569	122801769	-	1	NA	NA	NA	-18515	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.155000	0.746269	
mm_48048.1	chr5	136465967	136466167	-	1	NA	NA	NA	-90264	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	0.030000	0.437811	
mm_115198.1	chr13	109110950	109111150	+	1	NA	NA	NA	-213694	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.000000	0.368159	
mm_127421.1	chr15	101267006	101267206	+	1	NA	NA	NA	260	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.050000	0.542289	-4(TGGTATTAAAGG,-,0.00)
mm_66824.1	chr7	48691679	48691879	-	1	NA	NA	NA	-47978	NM_207537	404238	Mm.377926	NM_207537	ENSMUSG00000070546	Mrgprb3	MrgB3	MAS-related GPR, member B3	protein-coding	0.005000	0.422886	
mm_81658.1	chr9	110965167	110965367	+	1	NA	NA	NA	13722	NM_028838	74249	Mm.307615	NM_028838	ENSMUSG00000032495	Lrrc2	2400002D05Rik|4933431K03Rik	leucine rich repeat containing 2	protein-coding	0.030000	0.517413	
mm_34734.1	chr4	152189964	152190164	+	1	NA	NA	NA	3930	NM_001146057	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.010000	0.502488	64(CCCTTTAAAAGG,+,0.00),64(CCCTTTAAAAGG,-,0.00),65(CCTTTAAAAGGT,+,0.00)
mm_15617.1	chr2	160888007	160888207	+	1	NA	NA	NA	-61	NM_001199118	64899	Mm.292111	NM_022883	ENSMUSG00000027412	Lpin3	9130206L11Rik|AA438110|AV236139|mKIAA4023	lipin 3	protein-coding	0.055000	0.626866	
mm_145467.1	chr18	60291239	60291439	+	1	NA	NA	NA	-2041	NM_001101475	240328	Mm.329461	NM_001101475	ENSMUSG00000090942	F830016B08Rik	Ifgga4	RIKEN cDNA F830016B08 gene	protein-coding	0.005000	0.432836	
mm_72309.1	chr8	77549355	77549555	+	1	NA	NA	NA	58	NM_001081240	102182	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	0.110000	0.666667	
mm_138226.1	chr17	34354712	34354912	+	1	NA	NA	NA	-10	NM_079835	547431	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	0.005000	0.457711	
mm_141307.1	chr17	28232451	28232651	-	1	NA	NA	NA	-203	NM_011145	19015	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.075000	0.597015	85(GCTTTAAAGCGC,+,0.00)
mm_156983.1	chrX	7319068	7319268	-	1	NA	NA	NA	190	NM_001243762	12728	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	0.100000	0.686567	
mm_1889.1	chr1	85682295	85682495	+	1	NA	NA	NA	32407	NM_001313714	20684	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.020000	0.447761	
mm_27784.1	chr3	74126333	74126533	-	1	NA	NA	NA	-109156	NR_040450	100504692	Mm.394454	NR_040450	ENSMUSG00000104096	Gm20356	-	predicted gene, 20356	ncRNA	0.000000	0.497512	
mm_114272.1	chr13	58157531	58157731	+	1	NA	NA	NA	-18	NM_001048060	75731	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	0.065000	0.661692	
mm_102906.1	chr11	69555684	69555884	-	1	NA	NA	NA	4453	NM_007911	13643	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	0.015000	0.527363	
mm_24836.1	chr3	95659170	95659370	+	1	NA	NA	NA	549	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.130000	0.716418	
mm_96568.1	chr11	69027250	69027450	+	1	NA	NA	NA	11439	NM_001013256	68964	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	0.025000	0.502488	
mm_66683.1	chr7	45814212	45814412	-	1	NA	NA	NA	4	NM_011181	19158	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0.065000	0.661692	
mm_24627.1	chr3	93555063	93555263	+	1	NA	NA	NA	46	NM_009112	20194	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	0.080000	0.666667	
mm_137550.1	chr17	27561211	27561411	+	1	NA	NA	NA	4416	NM_001002895	106672	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251	expressed sequence AI413582	protein-coding	0.020000	0.562189	
mm_50343.1	chr6	48554711	48554911	+	1	NA	NA	NA	12	NM_177736	243371	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	0.095000	0.621891	-64(TCCCTTAAAAAC,-,0.00),-62(CCTTAAAAACAA,+,0.00)
mm_96478.1	chr11	67682060	67682260	+	1	NA	NA	NA	-13166	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.015000	0.522388	
mm_127845.1	chr15	7244877	7245077	-	1	NA	NA	NA	104435	NM_013584	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.005000	0.378109	
mm_131179.1	chr16	7144602	7144802	+	1	NA	NA	NA	74867	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.005000	0.338308	
mm_72860.1	chr8	88521164	88521364	+	1	NA	NA	NA	-80	NM_027280	93960	Mm.30219	NM_027280	ENSMUSG00000031661	Nkd1	2810434J10Rik|9030215G15Rik|Nkd	naked cuticle 1 homolog (Drosophila)	protein-coding	0.135000	0.805970	
mm_39071.1	chr4	154158075	154158275	-	1	NA	NA	NA	2509	NM_026388	67808	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	0.020000	0.477612	
mm_144350.1	chr18	15195279	15195479	+	1	NA	NA	NA	-43933	NM_134112	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.035000	0.492537	
mm_116964.1	chr13	56175923	56176123	-	1	NA	NA	NA	2862	NM_145976	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.010000	0.522388	
mm_149030.1	chr19	8774390	8774590	+	1	NA	NA	NA	5	NR_015538	100039957	Mm.220886	NR_015538		Gm2518	D630022E15Rik	interferon induced transmembrane protein 2 pseudogene	pseudo	0.095000	0.661692	
mm_46687.1	chr5	109844906	109845106	-	1	NA	NA	NA	-10864	NR_027964	667213	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213|ENSMUSG00000072761	zinc finger protein pseudogene	pseudo	0.035000	0.557214	
mm_143259.1	chr17	65594861	65595061	-	1	NA	NA	NA	18594	NM_013933	30960	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.025000	0.447761	
mm_59439.1	chr7	27132385	27132585	+	1	NA	NA	NA	12530	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.025000	0.432836	
mm_93.1	chr1	7119722	7119922	+	1	NA	NA	NA	30902	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.000000	0.313433	
mm_72584.1	chr8	84208798	84208998	+	1	NA	NA	NA	9	NR_037294	100526528		NR_037294	ENSMUSG00000105458	Mir3074-2	mir-3074-2|mmu-mir-3074-2	microRNA 3074-2	ncRNA	0.025000	0.587065	
mm_30539.1	chr4	3649155	3649355	+	1	NA	NA	NA	-7251	NR_040643	70143	Mm.417835	NR_040643	ENSMUSG00000085394	2210414B05Rik	-	RIKEN cDNA 2210414B05 gene	ncRNA	0.020000	0.537313	
mm_20446.1	chr2	129364617	129364817	-	1	NA	NA	NA	-5185	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.010000	0.398010	
mm_101475.1	chr11	30771570	30771770	-	1	NA	NA	NA	-105	NM_134013	103554	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	0.085000	0.656716	
mm_114962.1	chr13	97071532	97071732	+	1	NA	NA	NA	-11	NM_001100458	320557	Mm.458280	NM_001100458	ENSMUSG00000041817	Fam169a	B230112C05Rik|SLAP75	family with sequence similarity 169, member A	protein-coding	0.220000	0.830846	
mm_122343.1	chr14	37135216	37135416	-	1	NA	NA	NA	6	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.095000	0.616915	
mm_17135.1	chr2	24974990	24975190	-	1	NA	NA	NA	8	NM_001031808	107733	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	0.090000	0.676617	
mm_132912.1	chr16	48873531	48873731	+	1	NA	NA	NA	1023	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.005000	0.457711	
mm_86945.1	chr10	24640659	24640859	+	1	NA	NA	NA	45317	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.015000	0.472637	
mm_19476.1	chr2	92540877	92541077	-	1	NA	NA	NA	-51229	NR_106080	102466819		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	0.010000	0.497512	
mm_74952.1	chr8	25990004	25990204	-	1	NA	NA	NA	4017	NM_029037	74653	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	0.040000	0.512438	
mm_58652.1	chr7	6363194	6363394	+	1	NA	NA	NA	-14	NM_001025163	330463	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	0.075000	0.597015	
mm_49741.1	chr6	34745763	34745963	+	1	NA	NA	NA	-34569	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.030000	0.467662	
mm_105896.1	chr11	114982513	114982713	-	1	NA	NA	NA	7273	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.005000	0.477612	
mm_77320.1	chr8	118465648	118465848	-	1	NA	NA	NA	182137	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.005000	0.477612	-43(GCTCATATACCC,+,0.00)
mm_142424.1	chr17	45569004	45569204	-	1	NA	NA	NA	4157	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.030000	0.547264	
mm_61103.1	chr7	51887819	51888019	+	1	NA	NA	NA	8952	NM_001330607	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.010000	0.452736	-46(TTGTATAAAAAG,-,0.00)
mm_64468.1	chr7	143005561	143005761	+	1	NA	NA	NA	2	NM_001128081	27027	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.000000	0.532338	
mm_142330.1	chr17	43504172	43504372	-	1	NA	NA	NA	-1499	NM_008585	17287	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	0.005000	0.393035	
mm_100015.1	chr11	114883412	114883612	+	1	NA	NA	NA	-6529	NM_001347654	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.000000	0.552239	
mm_51521.1	chr6	83161698	83161898	+	1	NA	NA	NA	-4126	NM_001198866	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.065000	0.592040	
mm_149403.1	chr19	11392589	11392789	+	1	NA	NA	NA	-14972	NM_029499	64380	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	0.000000	0.393035	
mm_22544.1	chr3	8923805	8924005	+	1	NA	NA	NA	-48	NM_025434	66230	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.085000	0.636816	
mm_150184.1	chr19	32649037	32649237	+	1	NA	NA	NA	29132	NM_011864	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.000000	0.323383	
mm_145901.1	chr18	65697894	65698094	+	1	NA	NA	NA	-274	NM_177028	319888	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0.025000	0.487562	-37(GTTTTTAAACCC,+,0.00)
mm_103312.1	chr11	73137219	73137419	-	1	NA	NA	NA	975	NM_010353	14841	Mm.42045	NM_010353	ENSMUSG00000050107	Gsg2	Haspin	germ cell associated 2, haspin	protein-coding	0.030000	0.517413	
mm_124344.1	chr14	103844326	103844526	-	1	NA	NA	NA	50	NM_001136061	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.040000	0.532338	
mm_9241.1	chr1	171329423	171329623	-	1	NA	NA	NA	378	NM_011615	21945	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	0.140000	0.786070	
mm_143477.1	chr17	71256771	71256971	-	1	NA	NA	NA	52217	NM_001164885	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.025000	0.547264	
mm_46570.1	chr5	107192265	107192465	-	1	NA	NA	NA	97230	NM_011578	21814	Mm.200775	NM_011578	ENSMUSG00000029287	Tgfbr3	1110036H20Rik|AU015626|AW215636|TBRIII	transforming growth factor, beta receptor III	protein-coding	0.010000	0.477612	
mm_121020.1	chr14	79587561	79587761	+	1	NA	NA	NA	-30	NM_026474	67955	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0.100000	0.671642	
mm_22164.1	chr2	172978261	172978461	-	1	NA	NA	NA	-1481	NM_012046	26972	Mm.23495	NM_012046	ENSMUSG00000005883	Spo11	AI449549|Spo11a|Spo11b	SPO11 meiotic protein covalently bound to DSB	protein-coding	0.000000	0.512438	
mm_79083.1	chr9	46242382	46242582	+	1	NA	NA	NA	1638	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.025000	0.537313	
mm_46251.1	chr5	99250154	99250354	-	1	NA	NA	NA	2673	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.010000	0.462687	
mm_91866.1	chr10	59447888	59448088	-	1	NA	NA	NA	-6209	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.010000	0.353234	34(CTTTATATACTG,+,0.00)
mm_80712.1	chr9	92275581	92275781	+	1	NA	NA	NA	79	NM_001195084	18828	Mm.10306	NM_008880	ENSMUSG00000032372	Plscr2	-	phospholipid scramblase 2	protein-coding	0.005000	0.447761	
mm_19614.1	chr2	102811738	102811938	-	1	NA	NA	NA	89827	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.000000	0.333333	63(GCCTTTAAAAAT,-,0.00),64(CCTTTAAAAATC,+,0.00)
mm_24405.1	chr3	90362992	90363192	+	1	NA	NA	NA	21438	NM_139304	229542	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	0.000000	0.447761	
mm_48060.1	chr5	136566385	136566585	-	1	NA	NA	NA	-504	NM_001291233	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.105000	0.711443	
mm_100404.1	chr11	119403567	119403767	+	1	NA	NA	NA	13195	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.020000	0.477612	
mm_46950.1	chr5	114935870	114936070	-	1	NA	NA	NA	-6232	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.010000	0.572139	
mm_34119.1	chr4	139233290	139233490	+	1	NA	NA	NA	39279	NM_001271405	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.020000	0.542289	
mm_150209.1	chr19	32805347	32805547	+	1	NA	NA	NA	47870	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.000000	0.348259	
mm_134474.1	chr16	18588103	18588303	-	1	NA	NA	NA	-1234	NM_001285476	21380	Mm.295194	NM_011532	ENSMUSG00000009097	Tbx1	-	T-box 1	protein-coding	0.125000	0.761194	
mm_15728.1	chr2	164129777	164129977	+	1	NA	NA	NA	41236	NM_008435	16538	Mm.6217	NM_008435	ENSMUSG00000040164	Kcns1	Kv9.1	K+ voltage-gated channel, subfamily S, 1	protein-coding	0.000000	0.393035	
mm_44546.1	chr5	24577300	24577500	-	1	NA	NA	NA	67	NM_013853	27407	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	0.095000	0.666667	
mm_24143.1	chr3	88297107	88297307	+	1	NA	NA	NA	72	NM_009836	12462	Mm.256034	NM_009836	ENSMUSG00000001416	Cct3	AL024092|Cctg|Tcp1-rs3|TriC-P5	chaperonin containing Tcp1, subunit 3 (gamma)	protein-coding	0.055000	0.597015	
mm_12744.1	chr2	79122676	79122876	+	1	NA	NA	NA	-132650	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.000000	0.462687	
mm_17575.1	chr2	30414011	30414211	-	1	NA	NA	NA	1637	NM_007760	12908	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.020000	0.572139	
mm_100685.1	chr11	3504655	3504855	-	1	NA	NA	NA	66	NM_172439	170835	Mm.24313	NM_172439	ENSMUSG00000034570	Inpp5j	Pib5pa|Pipp	inositol polyphosphate 5-phosphatase J	protein-coding	0.010000	0.621891	
mm_33067.1	chr4	123282687	123282887	+	1	NA	NA	NA	-124	NM_130881	230721	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	0.085000	0.606965	-34(GGGTATAAATGG,-,0.00)
mm_90682.1	chr10	128909813	128910013	+	1	NA	NA	NA	47	NM_007653	12512	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.120000	0.781095	
mm_79934.1	chr9	65890217	65890417	+	1	NA	NA	NA	-6	NM_026515	68026	Mm.351273	NM_026515	ENSMUSG00000040204	Pclaf	2810417H13Rik|AA409629|Ns5apt9|Ns5atp9|PAF15|Paf|mKIAA0101|p15(PAF)	PCNA clamp associated factor	protein-coding	0.065000	0.507463	14(CCATTTAAACGG,+,0.00)
mm_48604.1	chr5	144255560	144255760	-	1	NA	NA	NA	435	NM_018772	55950	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.090000	0.746269	
mm_149573.1	chr19	12806116	12806316	+	1	NA	NA	NA	7607	NM_134152	107321	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	0.005000	0.427861	
mm_122606.1	chr14	51057175	51057375	-	1	NA	NA	NA	-33	NM_001011875	497106	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	0.010000	0.507463	
mm_8720.1	chr1	160044204	160044404	-	1	NA	NA	NA	-76	NR_028111	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.060000	0.601990	
mm_52529.1	chr6	115731869	115732069	+	1	NA	NA	NA	27030	NM_144805	94346	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0.035000	0.437811	-32(CTCCTTAAAAGG,-,0.00),-31(TCCTTAAAAGGG,+,0.00),-30(CCTTAAAAGGGA,+,0.00)
mm_21298.1	chr2	157027654	157027854	-	1	NA	NA	NA	-20679	NM_025853	66934	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0.010000	0.542289	-89(GCTTATCTAGCC,+,0.00)
mm_112.1	chr1	9601398	9601598	+	1	NA	NA	NA	231	NM_178399	76982	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	0.015000	0.567164	
mm_30461.1	chr3	153964522	153964722	-	1	NA	NA	NA	-8814	NM_001081263	242259	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0.030000	0.477612	
mm_68302.1	chr7	105746385	105746585	-	1	NA	NA	NA	-2147	NM_020024	24075	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	0.005000	0.457711	
mm_17166.1	chr2	25287963	25288163	-	1	NA	NA	NA	-82	NM_030055	78217	Mm.160057	NM_030055	ENSMUSG00000026963	Tmem210	4930571C24Rik	transmembrane protein 210	protein-coding	0.000000	0.522388	
mm_30068.1	chr3	137954649	137954849	-	1	NA	NA	NA	26800	NM_011932	26377	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.045000	0.542289	
mm_87633.1	chr10	58328607	58328807	+	1	NA	NA	NA	5241	NM_026148	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.020000	0.437811	
mm_2517.1	chr1	106318544	106318744	+	1	NA	NA	NA	146775	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.015000	0.417910	83(GTGTATATAGGC,-,0.00)
mm_70704.1	chr8	15057239	15057439	+	1	NA	NA	NA	-314	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.010000	0.512438	
mm_103116.1	chr11	69997211	69997411	-	1	NA	NA	NA	-151	NM_001291127	78246	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.125000	0.781095	
mm_107032.1	chr12	13412677	13412877	+	1	NA	NA	NA	143650	NM_027706	71169	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	0.030000	0.572139	
mm_160989.1	chr11	105975147	105975347	+	1	NA	NA	NA	39	NM_009598	11421	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0.015000	0.597015	
mm_91857.1	chr10	59430919	59431119	-	1	NA	NA	NA	10760	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.025000	0.502488	
mm_21244.1	chr2	156173629	156173829	-	1	NA	NA	NA	5851	NM_001291115	170791	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.000000	0.338308	59(GAGCTTAAAAAG,-,0.00),61(GCTTAAAAAGGG,+,0.00)
mm_62733.1	chr7	110808740	110808940	+	1	NA	NA	NA	35541	NM_025999	67150	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	0.005000	0.447761	
mm_44013.1	chr5	147269997	147270197	+	1	NA	NA	NA	-34	NM_008814	18609	Mm.389714	NM_008814	ENSMUSG00000029644	Pdx1	IDX-1|IPF-1|Ipf1|Mody4|STF-1|pdx-1	pancreatic and duodenal homeobox 1	protein-coding	0.045000	0.636816	
mm_94774.1	chr11	21255834	21256034	+	1	NA	NA	NA	16902	NM_001290628	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.000000	0.268657	-6(TTTTATATAGCA,+,0.00)
mm_81884.1	chr9	119357454	119357654	+	1	NA	NA	NA	173	NM_001199568	102448	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	0.125000	0.711443	
mm_128906.1	chr15	73423099	73423299	-	1	NA	NA	NA	-8	NM_001130409	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.195000	0.800995	
mm_126404.1	chr15	80250285	80250485	+	1	NA	NA	NA	-4799	NM_001287180	11911	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	0.015000	0.427861	
mm_44049.1	chr5	147869368	147869568	+	1	NA	NA	NA	8840	NM_025624	66537	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.015000	0.497512	
mm_144476.1	chr18	23913268	23913468	+	1	NA	NA	NA	-41320	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.000000	0.417910	
mm_78846.1	chr9	44327514	44327714	+	1	NA	NA	NA	769	NM_007875	13478	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	0.025000	0.567164	
mm_11592.1	chr2	33228261	33228461	+	1	NA	NA	NA	12400	NM_011923	26360	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0.030000	0.572139	
mm_150960.1	chr19	46396921	46397121	+	1	NA	NA	NA	125	NM_015752	24069	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	suppressor of fused homolog (Drosophila)	protein-coding	0.115000	0.701493	
mm_166062.1	chr4	134012334	134012534	-	1	NA	NA	NA	6382	NM_145833	83557	Mm.302567	NM_145833	ENSMUSG00000050966	Lin28a	AL024421|ENSMUSG00000070700|Gm10299|Lin-28|Lin28|Tex17|lin-28A	lin-28 homolog A (C. elegans)	protein-coding	0.020000	0.522388	
mm_85006.1	chr9	86880605	86880805	-	1	NA	NA	NA	-256	NM_001277983	20616	Mm.281651	NM_013669	ENSMUSG00000033419	Snap91	91kDa|AP180|F1-20|mKIAA0656	synaptosomal-associated protein 91	protein-coding	0.170000	0.781095	
mm_30305.1	chr3	149329609	149329809	-	1	NA	NA	NA	54972	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.015000	0.422886	
mm_51918.1	chr6	91234127	91234327	+	1	NA	NA	NA	21463	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.020000	0.557214	
mm_142544.1	chr17	46556039	46556239	-	1	NA	NA	NA	23	NM_020493	20807	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0.110000	0.716418	-87(CGCCATAAAAGG,-,0.00),-64(CTCTTTATATGG,-,0.00),-62(CTTTATATGGGG,+,0.00)
mm_89903.1	chr10	111164703	111164903	+	1	NA	NA	NA	1	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.120000	0.766169	
mm_55586.1	chr6	71440346	71440546	-	1	NA	NA	NA	191	NM_024288	68477	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.165000	0.761194	
mm_169531.1	chr14	91832316	91832516	-	1	NA	NA	NA	1705525	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA	0.030000	0.507463	
mm_113096.1	chr13	24327338	24327538	+	1	NA	NA	NA	34	NM_001111110	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.005000	0.462687	
mm_60149.1	chr7	38212809	38213009	+	1	NA	NA	NA	15085	NM_024413	72287	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	0.010000	0.422886	
mm_50673.1	chr6	51544526	51544726	+	1	NA	NA	NA	103	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.005000	0.467662	
mm_143611.1	chr17	78736460	78736660	-	1	NA	NA	NA	0	NM_011500	268980	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	0.125000	0.786070	
mm_113249.1	chr13	27559199	27559399	+	1	NA	NA	NA	5307	NM_001316721	67310	Mm.46091	NM_023332	ENSMUSG00000006490	Prl8a9	1600019F10Rik|Ghd15|PLP-C2|PLP-Cbeta|Prlpc2	prolactin family8, subfamily a, member 9	protein-coding	0.010000	0.363184	
mm_22849.1	chr3	28263110	28263310	+	1	NA	NA	NA	-4	NM_001163007	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.040000	0.636816	
mm_8007.1	chr1	134802616	134802816	-	1	NA	NA	NA	1005	NR_015606	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.000000	0.398010	
mm_55292.1	chr6	54566388	54566588	-	1	NA	NA	NA	-106	NM_027268	69938	Mm.41557	NM_027268	ENSMUSG00000019124	Scrn1	2810019K23Rik|6330535A03Rik|AI852905|SES1|mKIAA0193	secernin 1	protein-coding	0.050000	0.636816	
mm_40044.1	chr5	33854768	33854968	+	1	NA	NA	NA	11756	NM_001177884	107823	Mm.19892	NM_175231	ENSMUSG00000057406	Whsc1	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|NSD2|Whsc1l|mKIAA1090	Wolf-Hirschhorn syndrome candidate 1 (human)	protein-coding	0.000000	0.378109	
mm_10264.1	chr2	9681713	9681913	+	1	NA	NA	NA	196787	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.025000	0.492537	52(TCCTTGAAAAGC,-,0.00)
mm_79728.1	chr9	62341347	62341547	+	1	NA	NA	NA	104	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.090000	0.572139	
mm_6243.1	chr1	67038701	67038901	-	1	NA	NA	NA	33	NM_001190984	14768	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	0.135000	0.696517	
mm_58574.1	chr7	4866283	4866483	+	1	NA	NA	NA	-204	NM_026158	67441	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	0.040000	0.572139	
mm_139217.1	chr17	47729169	47729369	+	1	NA	NA	NA	2427	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.020000	0.547264	
mm_97437.1	chr11	78177132	78177332	+	1	NA	NA	NA	-566	NM_080849	140859	Mm.23788	NM_080849	ENSMUSG00000017405	Nek8	4632401F23Rik|b2b1449Clo|jck	NIMA (never in mitosis gene a)-related expressed kinase 8	protein-coding	0.050000	0.507463	
mm_130171.1	chr15	93334897	93335097	-	1	NA	NA	NA	1938	NR_028315	67057	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0.010000	0.338308	
mm_38151.1	chr4	134914915	134915115	-	1	NA	NA	NA	-99	NM_027935	71817	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0.090000	0.621891	
mm_41041.1	chr5	86089267	86089467	+	1	NA	NA	NA	17621	NM_001310639	56792	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.005000	0.328358	-87(CCCTAAAGAGAG,+,0.00)
mm_33386.1	chr4	129650142	129650342	+	1	NA	NA	NA	-9177	NM_001199695	109658	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	0.025000	0.507463	
mm_6190.1	chr1	65123051	65123251	-	1	NA	NA	NA	63	NM_175293	98303	Mm.348057	NM_175293	ENSMUSG00000044816	D630023F18Rik	AI314969	RIKEN cDNA D630023F18 gene	protein-coding	0.010000	0.507463	
mm_83154.1	chr9	40456292	40456492	-	1	NA	NA	NA	-628	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.030000	0.512438	
mm_119310.1	chr14	35580756	35580956	+	1	NA	NA	NA	231122	NM_001033766	239036	Mm.239970	NM_001033766	ENSMUSG00000041068	4930596D02Rik	-	RIKEN cDNA 4930596D02 gene	protein-coding	0.025000	0.542289	
mm_127290.1	chr15	100067407	100067607	+	1	NA	NA	NA	28843	NM_001159361	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.010000	0.442786	
mm_106022.1	chr11	116024400	116024600	-	1	NA	NA	NA	4	NM_008211	15081	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0.105000	0.572139	
mm_58907.1	chr7	17203377	17203577	+	1	NA	NA	NA	0	NM_054064	114872	Mm.322280	NM_054064	ENSMUSG00000023159	Psg29	AA102956|AA409969|cea17	pregnancy-specific glycoprotein 29	protein-coding	0.000000	0.502488	
mm_147648.1	chr18	60501468	60501668	-	1	NA	NA	NA	415	NM_134133	106878	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.110000	0.701493	
mm_142167.1	chr17	36167596	36167796	-	1	NA	NA	NA	841	NM_001081032	667977	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0.100000	0.686567	
mm_105726.1	chr11	109011822	109012022	-	1	NA	NA	NA	91573	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.095000	0.646766	
mm_165441.1	chr2	154309392	154309592	+	1	NA	NA	NA	2248	NM_001025574	433492	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838|OTTMUSG00000015915	BPI fold containing family B, member 9B	protein-coding	0.010000	0.557214	46(CCTCCTAAAAGG,-,0.00)
mm_32265.1	chr4	102603435	102603635	+	1	NA	NA	NA	13692	NM_001177981	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.015000	0.383085	59(CTGTATATAAAG,-,0.00)
mm_68744.1	chr7	121064290	121064490	-	1	NA	NA	NA	10140	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.010000	0.502488	
mm_41339.1	chr5	90497158	90497358	+	1	NA	NA	NA	6544	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.010000	0.477612	
mm_22860.1	chr3	28697863	28698063	+	1	NA	NA	NA	60	NM_031197	20526	Mm.18443	NM_031197	ENSMUSG00000027690	Slc2a2	AI266973|Glut-2|Glut2	solute carrier family 2 (facilitated glucose transporter), member 2	protein-coding	0.005000	0.467662	
mm_80009.1	chr9	67840282	67840482	+	1	NA	NA	NA	-14	NM_177184	320528	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.135000	0.756219	
mm_130293.1	chr15	97010095	97010295	-	1	NA	NA	NA	45761	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.035000	0.432836	-12(TCTTTTCTAGGG,+,0.00)
mm_56847.1	chr6	117907614	117907814	-	1	NA	NA	NA	-90	NM_001166428	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.125000	0.736318	
mm_161655.1	chr17	6673320	6673520	+	1	NA	NA	NA	-190	NM_031395	83672	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0.020000	0.422886	
mm_97954.1	chr11	83708995	83709195	+	1	NA	NA	NA	91	NM_007969	14038	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	0.010000	0.457711	
mm_96946.1	chr11	70540799	70540999	+	1	NA	NA	NA	627	NM_001302476	18806	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	0.005000	0.527363	
mm_78787.1	chr9	44032147	44032347	+	1	NA	NA	NA	-11137	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.010000	0.502488	
mm_99674.1	chr11	105975088	105975288	+	1	NA	NA	NA	-20	NM_009598	11421	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0.010000	0.616915	
mm_38183.1	chr4	135272709	135272909	-	1	NA	NA	NA	-49	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.090000	0.726368	
mm_52054.1	chr6	97224945	97225145	+	1	NA	NA	NA	14253	NM_022992	65106	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	0.000000	0.457711	
mm_135035.1	chr16	32868202	32868402	-	1	NA	NA	NA	64	NM_001200038	100502698	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Kiaa0226|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	0.040000	0.606965	
mm_134022.1	chr16	4939491	4939691	-	1	NA	NA	NA	-6	NR_037666	100503704	Mm.480572	NR_037666	ENSMUSG00000097397	Gm16861	-	predicted gene, 16861	ncRNA	0.045000	0.601990	
mm_22634.1	chr3	14862719	14862919	+	1	NA	NA	NA	-719	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.020000	0.567164	
mm_15538.1	chr2	158383724	158383924	+	1	NA	NA	NA	8186	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.000000	0.343284	
mm_66042.1	chr7	30664893	30665093	-	1	NA	NA	NA	1	NM_027999	71909	Mm.290410	NM_027999	ENSMUSG00000078762	Haus5	2310022K01Rik	HAUS augmin-like complex, subunit 5	protein-coding	0.085000	0.606965	
mm_103969.1	chr11	84513419	84513619	-	1	NA	NA	NA	-18	NM_019816	56321	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0.125000	0.706468	
mm_42290.1	chr5	114406679	114406879	+	1	NA	NA	NA	2311	NR_105994	102465621		NR_105994	ENSMUSG00000098731	Mir7027	Gm27831|mmu-mir-7027	microRNA 7027	ncRNA	0.045000	0.611940	
mm_135674.1	chr16	52418359	52418559	-	1	NA	NA	NA	34622	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.373134	
mm_126227.1	chr15	78934856	78935056	+	1	NA	NA	NA	23	NM_133800	97961	Mm.157216	NM_133800	ENSMUSG00000033099	Nol12	C78541|Nop25	nucleolar protein 12	protein-coding	0.070000	0.542289	
mm_103242.1	chr11	70688015	70688215	-	1	NA	NA	NA	-10	NM_001190379	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.070000	0.651741	18(GCCTCTTTAGGG,-,0.00)
mm_83616.1	chr9	48740603	48740803	-	1	NA	NA	NA	95242	NM_001033324	235320	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0.010000	0.412935	
mm_131348.1	chr16	13671861	13672061	+	1	NA	NA	NA	103	NM_025653	67118	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	0.075000	0.631841	
mm_111015.1	chr12	78983385	78983585	-	1	NA	NA	NA	-7	NM_001170401	268567	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.020000	0.517413	
mm_58267.1	chr6	145340610	145340810	-	1	NA	NA	NA	-46915	NR_003625	381827	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	0.070000	0.646766	
mm_76360.1	chr8	84772290	84772490	-	1	NA	NA	NA	1979	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.050000	0.577114	
mm_54055.1	chr6	13839398	13839598	-	1	NA	NA	NA	444	NM_001330666	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.025000	0.442786	
mm_44786.1	chr5	32146783	32146983	-	1	NA	NA	NA	10411	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.025000	0.562189	
mm_51661.1	chr6	86195220	86195420	+	1	NA	NA	NA	93	NM_031199	21802	Mm.137222	NM_031199	ENSMUSG00000029999	Tgfa	wa-1|wa1	transforming growth factor alpha	protein-coding	0.140000	0.786070	
mm_94839.1	chr11	23666062	23666262	+	1	NA	NA	NA	186	NM_028304	74467	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.065000	0.577114	18(GACCCTTTAAGG,-,0.00),20(CCCTTTAAGGCT,+,0.00)
mm_40963.1	chr5	76974610	76974810	+	1	NA	NA	NA	9	NM_025691	66661	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	0.065000	0.641791	
mm_8423.1	chr1	152386592	152386792	-	1	NA	NA	NA	-10	NM_025677	66637	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	0.100000	0.696517	
mm_132071.1	chr16	30065242	30065442	+	1	NA	NA	NA	-15	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hairy and enhancer of split 1 (Drosophila)	protein-coding	0.040000	0.517413	
mm_53484.1	chr6	135018065	135018265	+	1	NA	NA	NA	6553	NM_026360	67755	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	0.025000	0.487562	
mm_80623.1	chr9	88735583	88735783	+	1	NA	NA	NA	-3833	NM_007536	12047	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	0.000000	0.348259	
mm_64090.1	chr7	140968033	140968233	+	1	NA	NA	NA	57	NM_001112715	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding	0.020000	0.497512	-46(GCCCCTAAAAAG,-,0.00),-44(CCCTAAAAAGCA,+,0.00)
mm_25049.1	chr3	98308994	98309194	+	1	NA	NA	NA	28663	NM_008256	15360	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.015000	0.522388	
mm_86724.1	chr10	19062597	19062797	+	1	NA	NA	NA	-47287	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.015000	0.457711	
mm_65976.1	chr7	30442768	30442968	-	1	NA	NA	NA	2714	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.025000	0.577114	
mm_46327.1	chr5	100820852	100821052	-	1	NA	NA	NA	-17	NM_172405	70681	Mm.486560	NM_172405	ENSMUSG00000035234	Fam175a	3830405G04Rik|5630400M01Rik|AI506069|AL024423|AV118690|Ccdc98	family with sequence similarity 175, member A	protein-coding	0.110000	0.681592	
mm_149873.1	chr19	25158552	25158752	+	1	NA	NA	NA	-78550	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.010000	0.452736	9(GTTTTTAAAGAT,+,0.00)
mm_104309.1	chr11	92047310	92047510	-	1	NA	NA	NA	-469855	NM_028547	73470	Mm.67677	NM_028547	ENSMUSG00000046755	Kif2b	1700063D03Rik	kinesin family member 2B	protein-coding	0.000000	0.522388	-36(CACTATAAAAGG,-,0.00)
mm_143634.1	chr17	78985297	78985497	-	1	NA	NA	NA	23108	NM_001171005	75292	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	0.010000	0.343284	-80(CCTTTTAAATAT,+,0.00)
mm_143616.1	chr17	78768967	78769167	-	1	NA	NA	NA	-32507	NM_011500	268980	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	0.005000	0.467662	
mm_154348.1	chrM	5678	5878	+	1	NA	NA	NA	NA	NA									0.005000	0.417910	
mm_46752.1	chr5	112228557	112228757	-	1	NA	NA	NA	291	NR_033657	330166	Mm.44854	NR_003718	ENSMUSG00000097767	Miat	3632434I06|A230057G18Rik|Rncr2|gomafu	myocardial infarction associated transcript (non-protein coding)	ncRNA	0.075000	0.681592	
mm_153971.1	chr19	47859373	47859573	-	1	NA	NA	NA	4500	NM_010362	14873	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0.030000	0.462687	
mm_105971.1	chr11	115498158	115498358	-	1	NA	NA	NA	-6444	NM_015807	50773	Mm.390379	NM_015807	ENSMUSG00000020736	Nt5c	Dnt|Dnt1|Umph-2|Umph2	5',3'-nucleotidase, cytosolic	protein-coding	0.015000	0.527363	
mm_152448.1	chr19	10829800	10830000	-	1	NA	NA	NA	158	NM_001037801	12511	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.035000	0.572139	
mm_13844.1	chr2	119547632	119547832	+	1	NA	NA	NA	25	NM_019769	56398	Mm.214765	NM_019769	ENSMUSG00000014077	Chp1	1500003O03Rik|AA960066|AI046351|Cahp|Chp|Sid470p|p24|vac	calcineurin-like EF hand protein 1	protein-coding	0.085000	0.691542	
mm_29549.1	chr3	116807629	116807829	-	1	NA	NA	NA	437	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.015000	0.467662	
mm_116439.1	chr13	43008468	43008668	-	1	NA	NA	NA	-114271	NM_001005748	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.015000	0.497512	
mm_14426.1	chr2	130539317	130539517	+	1	NA	NA	NA	24332	NR_040348	321014	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	0.010000	0.497512	
mm_95118.1	chr11	34078059	34078259	+	1	NA	NA	NA	30958	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.005000	0.442786	
mm_64301.1	chr7	141861667	141861867	+	1	NA	NA	NA	22695	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.005000	0.497512	
mm_23148.1	chr3	39979681	39979881	+	1	NA	NA	NA	543131	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.005000	0.457711	
mm_169446.1	chr14	57890231	57890431	-	1	NA	NA	NA	-69	NM_029492	75965	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|ENSMUSG00000055956|HK11	zinc finger, DHHC domain containing 20	protein-coding	0.120000	0.771144	
mm_96972.1	chr11	70650544	70650744	+	1	NA	NA	NA	3357	NM_027445	70510	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0.020000	0.512438	
mm_102353.1	chr11	58214619	58214819	-	1	NA	NA	NA	-258	NM_019440	54396	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	0.035000	0.582090	
mm_34169.1	chr4	139942579	139942779	+	1	NA	NA	NA	840	NR_045159	71235	Mm.61253	NR_045159	ENSMUSG00000085928	4933427I22Rik	-	RIKEN cDNA 4933427I22 gene	ncRNA	0.005000	0.522388	
mm_94273.1	chr11	3839895	3840095	+	1	NA	NA	NA	23908	NM_152818	74309	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	0.005000	0.507463	
mm_158029.1	chrX	96935147	96935347	-	1	NA	NA	NA	-137349	NM_001033361	245526	Mm.336164	NM_001033361	ENSMUSG00000031212	Pgr15l	-	G protein-coupled receptor 15-like	protein-coding	0.000000	0.482587	
mm_173341.1	chrY	90812071	90812271	+	1	NA	NA	NA	26729	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.025000	0.492537	
mm_44691.1	chr5	30198312	30198512	-	1	NA	NA	NA	7310	NM_001014394	381628	Mm.291148	NM_001014394	ENSMUSG00000067642	Adgrf3	Gm1041|Gpr113|Pgr23	adhesion G protein-coupled receptor F3	protein-coding	0.015000	0.577114	
mm_163736.1	chr13	119690326	119690526	+	1	NA	NA	NA	75	NM_001291439	208715	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	0.085000	0.676617	
mm_65235.1	chr7	19756694	19756894	-	1	NA	NA	NA	-7221	NM_001159724	19294	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.025000	0.621891	
mm_112157.1	chr12	113307818	113308018	-	1	NA	NA	NA	122015	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.005000	0.497512	
mm_118433.1	chr14	8016442	8016642	+	1	NA	NA	NA	13576	NM_001331064	66082	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	0.015000	0.492537	-36(AACTATAAAGGG,-,0.00)
mm_165821.1	chr3	146899385	146899585	+	1	NA	NA	NA	47118	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.005000	0.417910	
mm_29801.1	chr3	127780224	127780424	-	1	NA	NA	NA	203	NM_027808	71481	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	0.055000	0.542289	
mm_135640.1	chr16	52355992	52356192	-	1	NA	NA	NA	96989	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.015000	0.502488	
mm_158536.1	chrX	143932903	143933103	-	1	NA	NA	NA	121	NM_001110222	13193	Mm.12871	NM_010025	ENSMUSG00000031285	Dcx	Dbct	doublecortin	protein-coding	0.025000	0.442786	
mm_40638.1	chr5	64909209	64909409	+	1	NA	NA	NA	23390	NM_030682	21897	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.005000	0.422886	
mm_97165.1	chr11	75490365	75490565	+	1	NA	NA	NA	3688	NM_138659	192159	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	0.010000	0.467662	
mm_139818.1	chr17	67629517	67629717	+	1	NA	NA	NA	3106	NM_001033340	240131	Mm.295736	NM_001033340	ENSMUSG00000073375	Lrrc30	Gm326	leucine rich repeat containing 30	protein-coding	0.020000	0.557214	
mm_148278.1	chr18	81927609	81927809	-	1	NA	NA	NA	64371	NR_039589	100628596		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.045000	0.562189	
mm_114022.1	chr13	52629946	52630146	+	1	NA	NA	NA	33164	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.015000	0.442786	
mm_35485.1	chr4	40876743	40876943	-	1	NA	NA	NA	-22306	NM_022305	14595	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0.030000	0.477612	
mm_111869.1	chr12	108001893	108002093	-	1	NA	NA	NA	1421	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.070000	0.502488	
mm_7631.1	chr1	127732441	127732641	-	1	NA	NA	NA	3128	NM_001033041	266645	Mm.25735	NM_001033041	ENSMUSG00000026348	Acmsd	-	amino carboxymuconate semialdehyde decarboxylase	protein-coding	0.015000	0.437811	
mm_76195.1	chr8	82403115	82403315	-	1	NA	NA	NA	-629	NM_008357	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.020000	0.552239	
mm_129482.1	chr15	78770813	78771013	-	1	NA	NA	NA	2532	NM_008595	17305	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.010000	0.522388	
mm_70884.1	chr8	25426570	25426770	+	1	NA	NA	NA	-92089	NM_001079909	14182	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.015000	0.567164	
mm_82373.1	chr9	14615295	14615495	-	1	NA	NA	NA	-395	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.010000	0.502488	
mm_15796.1	chr2	164443313	164443513	+	1	NA	NA	NA	-225	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.045000	0.587065	
mm_13192.1	chr2	93199723	93199923	+	1	NA	NA	NA	12239	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.040000	0.572139	
mm_38843.1	chr4	149177508	149177708	-	1	NA	NA	NA	-10901	NM_001081274	110208	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.000000	0.323383	
mm_18469.1	chr2	62411714	62411914	-	1	NA	NA	NA	417	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.080000	0.616915	
mm_75294.1	chr8	41054687	41054887	-	1	NA	NA	NA	9	NM_001005864	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.025000	0.502488	
mm_104239.1	chr11	88718049	88718249	-	1	NA	NA	NA	80	NM_054043	76626	Mm.400451	NM_054043	ENSMUSG00000069769	Msi2	1700105C15Rik|AI451722|AI563628|AW489193|Msi2h	musashi RNA-binding protein 2	protein-coding	0.120000	0.776119	
mm_20138.1	chr2	121413675	121413875	-	1	NA	NA	NA	17	NM_153075	212670	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	0.135000	0.746269	
mm_162224.1	chrX	145486940	145487140	-	1	NA	NA	NA	599	NM_001290274	27494	Mm.100068	NM_153319	ENSMUSG00000041688	Amot	CAG-2|D0Kist1|Sii6	angiomotin	protein-coding	0.005000	0.512438	
mm_65979.1	chr7	30445378	30445578	-	1	NA	NA	NA	104	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.125000	0.781095	
mm_27179.1	chr3	34351594	34351794	-	1	NA	NA	NA	-208687	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA	0.015000	0.482587	
mm_3797.1	chr1	157458476	157458676	+	1	NA	NA	NA	-6	NM_001033284	226527	Mm.215960	NM_001033284	ENSMUSG00000033488	BC026585	-	cDNA sequence BC026585	protein-coding	0.065000	0.701493	
mm_107873.1	chr12	69946051	69946251	+	1	NA	NA	NA	-17258	NR_036607	100040999	Mm.394588	NR_036607	ENSMUSG00000079076	Gm3086	-	RuvB-like protein 1 pseudogene	pseudo	0.010000	0.467662	
mm_52370.1	chr6	113046383	113046583	+	1	NA	NA	NA	156	NM_008188	14911	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0.075000	0.656716	
mm_52018.1	chr6	94661588	94661788	+	1	NA	NA	NA	38457	NM_008377	16206	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.020000	0.452736	
mm_49632.1	chr6	30804807	30805007	+	1	NA	NA	NA	63608	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.582090	
mm_164252.1	chr15	97995530	97995730	-	1	NA	NA	NA	9094	NM_031163	12824	Mm.2423	NM_031163	ENSMUSG00000022483	Col2a1	Col2|Col2a|Col2a-1|Del1|Dmm|Lpk|Rgsc856	collagen, type II, alpha 1	protein-coding	0.005000	0.542289	
mm_85913.1	chr9	111057371	111057571	-	1	NA	NA	NA	47	NM_001302376	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.020000	0.527363	
mm_57711.1	chr6	128622784	128622984	-	1	NA	NA	NA	50	NM_001159902	17057	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	0.005000	0.507463	
mm_128065.1	chr15	26816434	26816634	-	1	NA	NA	NA	79030	NM_176959	448987	Mm.253378	NM_176959	ENSMUSG00000043556	Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding	0.005000	0.452736	
mm_81808.1	chr9	117317435	117317635	+	1	NA	NA	NA	-65052	NM_001172126	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.005000	0.507463	
mm_134188.1	chr16	10966432	10966632	-	1	NA	NA	NA	26589	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.025000	0.592040	
mm_92495.1	chr10	78311923	78312123	-	1	NA	NA	NA	28184	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.015000	0.582090	
mm_29406.1	chr3	108907960	108908160	-	1	NA	NA	NA	3644	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.010000	0.368159	-34(TCCCTTTAAAGG,-,0.00),-33(CCCTTTAAAGGT,+,0.00),-33(CCCTTTAAAGGT,-,0.00),-32(CCTTTAAAGGTT,+,0.00)
mm_69286.1	chr7	128205830	128206030	-	1	NA	NA	NA	436	NM_009943	12862	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	0.060000	0.631841	
mm_93165.1	chr10	93276440	93276640	-	1	NA	NA	NA	34619	NM_001322268	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.035000	0.542289	
mm_131864.1	chr16	23127704	23127904	+	1	NA	NA	NA	-74	NM_145480	106344	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	0.125000	0.676617	
mm_50126.1	chr6	41539105	41539305	+	1	NA	NA	NA	17429	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.000000	0.482587	
mm_107428.1	chr12	35579267	35579467	+	1	NA	NA	NA	-44378	NM_001314027	11622	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0.010000	0.407960	
mm_78610.1	chr9	37545014	37545214	+	1	NA	NA	NA	5859	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.055000	0.592040	
mm_137463.1	chr17	26621417	26621617	+	1	NA	NA	NA	-54879	NM_025272	11974	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.020000	0.621891	
mm_158095.1	chrX	101421049	101421249	-	1	NA	NA	NA	-464	NM_001177987	56364	Mm.23458	NM_019831	ENSMUSG00000031310	Zmym3	9030216B10Rik|AW122925|DXS6673El|Zfp261	zinc finger, MYM-type 3	protein-coding	0.015000	0.487562	
mm_47990.1	chr5	135957451	135957651	-	1	NA	NA	NA	16925	NM_001160366	109267	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0.050000	0.517413	
mm_13900.1	chr2	120476751	120476951	+	1	NA	NA	NA	-58	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.015000	0.587065	32(AGCTATATAGGC,-,0.00)
mm_151594.1	chr19	3414373	3414573	-	1	NA	NA	NA	71	NM_001329667	14419	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	0.115000	0.696517	-33(GGGCATAAATAG,-,0.00),-31(GCATAAATAGCG,+,0.00)
mm_137407.1	chr17	26087180	26087380	+	1	NA	NA	NA	2884	NM_011933	26378	Mm.292869	NM_011933	ENSMUSG00000036775	Decr2	-	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	protein-coding	0.025000	0.502488	
mm_13225.1	chr2	97467481	97467681	+	1	NA	NA	NA	-76	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.030000	0.398010	
mm_129579.1	chr15	79741189	79741389	-	1	NA	NA	NA	1247	NM_194342	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.005000	0.512438	
mm_110706.1	chr12	69322162	69322362	-	1	NA	NA	NA	25581	NM_027117	69554	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0.005000	0.457711	
mm_46058.1	chr5	92256219	92256419	-	1	NA	NA	NA	-3160	NM_011148	19023	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	0.025000	0.577114	
mm_126310.1	chr15	79659132	79659332	+	1	NA	NA	NA	5	NM_028634	73739	Mm.294441	NM_028634	ENSMUSG00000022428	Cby1	1110014P06Rik|CBY|PGEA14|Pgea1|arb1	chibby family member 1, beta catenin antagonist	protein-coding	0.100000	0.656716	
mm_103099.1	chr11	69936092	69936292	-	1	NA	NA	NA	-136	NM_001347634	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.130000	0.820896	
mm_141412.1	chr17	29411102	29411302	-	1	NA	NA	NA	50288	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.005000	0.373134	
mm_143690.1	chr17	80260365	80260565	-	1	NA	NA	NA	-29747	NM_194269	378462	Mm.45208	NM_194269	ENSMUSG00000045257	Morn2	Mopt	MORN repeat containing 2	protein-coding	0.025000	0.457711	55(GCCCATATATGC,-,0.00)
mm_62849.1	chr7	114317570	114317770	+	1	NA	NA	NA	-41554	NM_011965	26440	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.015000	0.522388	
mm_115273.1	chr13	111686028	111686228	+	1	NA	NA	NA	-50	NM_172593	218613	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0.165000	0.796020	70(TGCCCTATAAGG,-,0.00),72(CCCTATAAGGGG,+,0.00),72(CCCTATAAGGGG,-,0.00)
mm_98964.1	chr11	98664267	98664467	+	1	NA	NA	NA	16	NM_021347	57911	Mm.458085	NM_021347	ENSMUSG00000017204	Gsdma	BB149167|Gsdm|Gsdm1|Gsdma1|H312E	gasdermin A	protein-coding	0.015000	0.562189	-3(CCCTATAGACAG,+,0.00)
mm_99767.1	chr11	106999609	106999809	+	1	NA	NA	NA	-184	NM_010655	16647	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.045000	0.557214	
mm_169764.1	chr15	99703074	99703274	+	1	NA	NA	NA	887	NM_031842	83797	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.020000	0.597015	
mm_143372.1	chr17	67632552	67632752	-	1	NA	NA	NA	71	NM_001033340	240131	Mm.295736	NM_001033340	ENSMUSG00000073375	Lrrc30	Gm326	leucine rich repeat containing 30	protein-coding	0.020000	0.557214	
mm_27102.1	chr3	30509614	30509814	-	1	NA	NA	NA	-227	NM_021442	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.055000	0.497512	
mm_157924.1	chrX	79631087	79631287	-	1	NA	NA	NA	4395	NM_001113734	71967	Mm.379207	NM_028025	ENSMUSG00000046942	Mageb16	2410003J06Rik	melanoma antigen family B, 16	protein-coding	0.000000	0.552239	
mm_130821.1	chr15	101845378	101845578	-	1	NA	NA	NA	5308	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.045000	0.507463	-36(TCTTTTATGGAG,+,0.00)
mm_5801.1	chr1	52164749	52164949	-	1	NA	NA	NA	45227	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.020000	0.472637	
mm_103714.1	chr11	79523661	79523861	-	1	NA	NA	NA	1	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.030000	0.457711	
mm_101393.1	chr11	26210469	26210669	-	1	NA	NA	NA	7	NR_027973	70626	Mm.379180	NM_027486		5730522E02Rik	-	RIKEN cDNA 5730522E02 gene	ncRNA	0.175000	0.711443	
mm_56182.1	chr6	88373817	88374017	-	1	NA	NA	NA	72622	NM_023060	65967	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	0.010000	0.388060	
mm_125327.1	chr15	38544050	38544250	+	1	NA	NA	NA	-24884	NM_018745	54375	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.015000	0.512438	
mm_17098.1	chr2	23155795	23155995	-	1	NA	NA	NA	129	NM_025979	67121	Mm.253721	NM_025979	ENSMUSG00000026779	Mastl	2700091H24Rik|C88295|GW|GWL|MAST-L|THC2	microtubule associated serine/threonine kinase-like	protein-coding	0.100000	0.631841	
mm_54.1	chr1	6528164	6528364	+	1	NA	NA	NA	41033	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.298507	
mm_110302.1	chr12	32815920	32816120	-	1	NA	NA	NA	-4315	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.000000	0.343284	-34(CTCTATATAAGT,-,0.00)
mm_77978.1	chr9	7870653	7870853	+	1	NA	NA	NA	2417	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.005000	0.482587	-34(TCCTTTATAAGT,-,0.00)
mm_128005.1	chr15	12824570	12824770	-	1	NA	NA	NA	-13	NM_001166360	77877	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	0.140000	0.651741	
mm_58758.1	chr7	13450778	13450978	+	1	NA	NA	NA	37	NM_001301682	330470	Mm.291102	NM_001033418	ENSMUSG00000074378	Bsph1	Gm767	binder of sperm protein homolog 1	protein-coding	0.000000	0.497512	
mm_41663.1	chr5	99274558	99274758	+	1	NA	NA	NA	-21731	NM_145839	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.025000	0.417910	
mm_117709.1	chr13	95222222	95222422	-	1	NA	NA	NA	728	NM_001170669	218461	Mm.100167	NM_172263	ENSMUSG00000021684	Pde8b	B230331L10Rik|C030047E14Rik	phosphodiesterase 8B	protein-coding	0.030000	0.457711	
mm_166146.1	chr5	3803115	3803315	+	1	NA	NA	NA	34	NR_033173	79264	Mm.32368	NM_030675	ENSMUSG00000000600	Krit1	2010007K12Rik|A630036P20Rik|AA432855|AI450393|AI643869|BB155247|BB235701|Ccm1	KRIT1, ankyrin repeat containing	protein-coding	0.080000	0.661692	
mm_5191.1	chr1	13225838	13226038	-	1	NA	NA	NA	-98775	NM_001081209	383491	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0.020000	0.507463	
mm_124268.1	chr14	102982538	102982738	-	1	NA	NA	NA	-1	NM_177715	239217	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0.185000	0.805970	
mm_169337.1	chr14	122118587	122118787	+	1	NA	NA	NA	11605	NM_080556	68059	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	0.000000	0.527363	
mm_89918.1	chr10	111190220	111190420	+	1	NA	NA	NA	25518	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.005000	0.422886	
mm_68366.1	chr7	106985304	106985504	-	1	NA	NA	NA	-9953	NM_147035	259037	Mm.223420	NM_147035	ENSMUSG00000045013	Olfr711	MOR103-4	olfactory receptor 711	protein-coding	0.015000	0.437811	
mm_102234.1	chr11	54955937	54956137	-	1	NA	NA	NA	6903	NM_021327	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.115000	0.711443	
mm_146352.1	chr18	82561693	82561893	+	1	NA	NA	NA	7285	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.040000	0.656716	
mm_90801.1	chr10	7663459	7663659	-	1	NA	NA	NA	25	NM_008786	18537	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	0.090000	0.661692	
mm_85556.1	chr9	106789069	106789269	-	1	NA	NA	NA	44	NM_030730	81000	Mm.246689	NM_030730	ENSMUSG00000040661	Rad54l2	Arip4|D130058C05|G630026H09Rik|Srisnf2l	RAD54 like 2 (S. cerevisiae)	protein-coding	0.120000	0.751244	
mm_7100.1	chr1	88702248	88702448	-	1	NA	NA	NA	-157	NM_177305	320982	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.145000	0.691542	-54(TTTTTAAAAGAC,+,0.00)
mm_140224.1	chr17	83980457	83980657	+	1	NA	NA	NA	-17995	NR_130994	78148	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.015000	0.477612	
mm_3937.1	chr1	163779465	163779665	+	1	NA	NA	NA	-18	NM_001305643	16579	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	0.060000	0.616915	
mm_123857.1	chr14	70994502	70994702	-	1	NA	NA	NA	104495	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.020000	0.522388	
mm_119811.1	chr14	54222714	54222914	+	1	NA	NA	NA	31115	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.467662	
mm_676.1	chr1	40466000	40466200	+	1	NA	NA	NA	94	NM_008365	16182	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0.020000	0.502488	
mm_146145.1	chr18	74779114	74779314	+	1	NA	NA	NA	2	NM_177470	52538	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	0.075000	0.686567	
mm_97212.1	chr11	75626210	75626410	+	1	NA	NA	NA	-4710	NM_008916	19062	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.010000	0.442786	
mm_43104.1	chr5	124483415	124483615	+	1	NA	NA	NA	360	NM_029532	76167	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.080000	0.671642	
mm_60689.1	chr7	45163821	45164021	+	1	NA	NA	NA	0	NM_182993	72961	Mm.255631	NM_182993	ENSMUSG00000070570	Slc17a7	2900052E22Rik|AI851913|Vglut1	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 7	protein-coding	0.095000	0.746269	
mm_8923.1	chr1	163403553	163403753	-	1	NA	NA	NA	16	NM_001313738	98376	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	0.065000	0.646766	
mm_23273.1	chr3	51660259	51660459	+	1	NA	NA	NA	-820	NM_174995	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.020000	0.542289	
mm_139334.1	chr17	49439370	49439570	+	1	NA	NA	NA	11106	NM_020042	56738	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.025000	0.562189	
mm_79517.1	chr9	57537448	57537648	+	1	NA	NA	NA	20	NM_001166364	78323	Mm.25814	NM_175273	ENSMUSG00000032305	Fam219b	2310046O06Rik|AI594866	family with sequence similarity 219, member B	protein-coding	0.125000	0.666667	
mm_73315.1	chr8	105216645	105216845	+	1	NA	NA	NA	-8443	NM_145604	234678	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	0.000000	0.368159	
mm_44082.1	chr5	149157286	149157486	+	1	NA	NA	NA	-1194	NR_028061	667410	Mm.441522	NR_028061		Gm8615	EG667410	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.040000	0.542289	-13(GTTTTTAGAGAG,+,0.00)
mm_81756.1	chr9	113969113	113969313	+	1	NA	NA	NA	24587	NR_039590	100628597		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	0.020000	0.527363	
mm_84370.1	chr9	64949187	64949387	-	1	NA	NA	NA	2320	NM_144813	214111	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	0.000000	0.502488	
mm_41730.1	chr5	102481666	102481866	+	1	NA	NA	NA	375	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.045000	0.641791	
mm_23097.1	chr3	37063610	37063810	+	1	NA	NA	NA	54	NM_009350	21744	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	0.125000	0.746269	
mm_27124.1	chr3	31330839	31331039	-	1	NA	NA	NA	-20620	NM_172861	241919	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.005000	0.378109	
mm_114062.1	chr13	54378485	54378685	+	1	NA	NA	NA	7236	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.020000	0.537313	
mm_51587.1	chr6	83795122	83795322	+	1	NA	NA	NA	64	NM_001164187	56174	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	0.120000	0.656716	
mm_102979.1	chr11	69680553	69680753	-	1	NA	NA	NA	1317	NM_030702	80886	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0.025000	0.597015	
mm_71918.1	chr8	70141525	70141725	+	1	NA	NA	NA	1348	NM_001309841	72368	Mm.644	NM_001145552	ENSMUSG00000002345	Borcs8	2310045N01Rik|Mef2bnb	BLOC-1 related complex subunit 8	protein-coding	0.000000	0.298507	
mm_44526.1	chr5	24423397	24423597	-	1	NA	NA	NA	33	NM_007668	12568	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding	0.055000	0.592040	
mm_34695.1	chr4	152027714	152027914	+	1	NA	NA	NA	-143	NM_133879	100090	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3	zinc finger and BTB domain containing 48	protein-coding	0.060000	0.621891	
mm_9421.1	chr1	172335840	172336040	-	1	NA	NA	NA	-5270	NM_001039484	16513	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	0.025000	0.527363	
mm_7218.1	chr1	93160831	93161031	-	1	NA	NA	NA	17	NM_172411	71874	Mm.158766	NM_172411	ENSMUSG00000034159	2310007B03Rik	-	RIKEN cDNA 2310007B03 gene	protein-coding	0.025000	0.601990	
mm_38416.1	chr4	139130943	139131143	-	1	NA	NA	NA	-6	NR_033745	433771	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	0.105000	0.646766	
mm_96685.1	chr11	69580306	69580506	+	1	NA	NA	NA	47	NM_001127233	22059	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.030000	0.582090	
mm_14990.1	chr2	152273983	152274183	+	1	NA	NA	NA	-19789	NM_024196	67231	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	0.010000	0.318408	
mm_106960.1	chr12	8921923	8922123	+	1	NA	NA	NA	716	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.115000	0.681592	
mm_52628.1	chr6	117174141	117174341	+	1	NA	NA	NA	5706	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.025000	0.557214	
mm_164126.1	chr15	38710610	38710810	+	1	NA	NA	NA	17806	NR_131206	105463124	Mm.432448	NR_131206		Borg	-	BMP/OP-responsive gene	ncRNA	0.000000	0.393035	39(GCTTAAATAGAG,+,0.00)
mm_20478.1	chr2	129595594	129595794	-	1	NA	NA	NA	2525	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.015000	0.472637	
mm_162544.1	chr1	170644248	170644448	-	1	NA	NA	NA	-184	NM_177068	320078	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.095000	0.656716	
mm_5982.1	chr1	58419901	58420101	-	1	NA	NA	NA	4087	NR_027853	12747	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	0.000000	0.258706	
mm_35821.1	chr4	47010702	47010902	-	1	NA	NA	NA	-19088	NM_001081141	242425	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	0.015000	0.512438	
mm_4489.1	chr1	173631017	173631217	+	1	NA	NA	NA	258	NM_175026	236312	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	0.000000	0.437811	
mm_44819.1	chr5	33652458	33652658	-	1	NA	NA	NA	16	NM_001289725	20492	Mm.4172	NM_009193	ENSMUSG00000004642	Slbp	-	stem-loop binding protein	protein-coding	0.080000	0.656716	
mm_59143.1	chr7	24280475	24280675	+	1	NA	NA	NA	10157	NM_009567	22755	Mm.383535	NM_009567	ENSMUSG00000055305	Zfp93	Znf235	zinc finger protein 93	protein-coding	0.010000	0.587065	
mm_136395.1	chr16	93153965	93154165	-	1	NA	NA	NA	199124	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.015000	0.502488	
mm_98748.1	chr11	96542333	96542533	+	1	NA	NA	NA	77842	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.010000	0.293532	
mm_85631.1	chr9	107619674	107619874	-	1	NA	NA	NA	-10533	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.040000	0.587065	
mm_44149.1	chr5	150260036	150260236	+	1	NA	NA	NA	206	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.035000	0.572139	-6(TCCTTTAAATGA,-,0.00)
mm_23112.1	chr3	37481465	37481665	+	1	NA	NA	NA	61615	NM_021343	57815	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0.060000	0.547264	
mm_102816.1	chr11	68973243	68973443	-	1	NA	NA	NA	512	NM_021329	57785	Mm.143774	NM_021329	ENSMUSG00000032892	Rangrf	2400006H24Rik|Mog1|Rangnrf	RAN guanine nucleotide release factor	protein-coding	0.050000	0.597015	
mm_167519.1	chr9	16442282	16442482	+	1	NA	NA	NA	-64151	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.015000	0.437811	-83(ATCTTTAAAAAC,-,0.00),78(TCTTTTATGACC,+,0.00)
mm_68770.1	chr7	121981588	121981788	-	1	NA	NA	NA	5	NM_001033318	233824	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0.145000	0.651741	
mm_84100.1	chr9	58278891	58279091	-	1	NA	NA	NA	25827	NM_026942	69106	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.005000	0.522388	-55(CCCCATATAGCC,+,0.00)
mm_158681.1	chrX	160138260	160138460	-	1	NA	NA	NA	70	NM_008810	18597	Mm.34775	NM_008810	ENSMUSG00000031299	Pdha1	Pdha-1	pyruvate dehydrogenase E1 alpha 1	protein-coding	0.120000	0.666667	
mm_76292.1	chr8	84201888	84202088	-	1	NA	NA	NA	-6530	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.010000	0.537313	
mm_162731.1	chr10	44058772	44058972	-	1	NA	NA	NA	-54026	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.020000	0.487562	-77(TCTTATAAAGCG,+,0.00)
mm_73164.1	chr8	95017617	95017817	+	1	NA	NA	NA	25	NM_173036	54672	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.035000	0.562189	
mm_93881.1	chr10	125308717	125308917	-	1	NA	NA	NA	19718	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.045000	0.537313	
mm_48950.1	chr6	4540480	4540680	+	1	NA	NA	NA	34962	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.020000	0.398010	
mm_48794.1	chr5	148928502	148928702	-	1	NA	NA	NA	45	NM_153572	231912	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	0.085000	0.631841	
mm_21299.1	chr2	157027699	157027899	-	1	NA	NA	NA	-20724	NM_025853	66934	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0.015000	0.512438	-44(GCTTATCTAGCC,+,0.00)
mm_56310.1	chr6	92177354	92177554	-	1	NA	NA	NA	6569	NM_025578	64658	Mm.87062	NM_025578	ENSMUSG00000014551	Mrps25	2810429N01Rik|Rpms25	mitochondrial ribosomal protein S25	protein-coding	0.010000	0.417910	
mm_9051.1	chr1	167285044	167285244	-	1	NA	NA	NA	-17	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.090000	0.726368	
mm_110137.1	chr12	26447422	26447622	-	1	NA	NA	NA	8930	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.010000	0.502488	
mm_14156.1	chr2	126587718	126587918	+	1	NA	NA	NA	30860	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.005000	0.402985	-37(ACTTTTAAACAC,+,0.00)
mm_109931.1	chr12	8921759	8921959	-	1	NA	NA	NA	552	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.080000	0.572139	
mm_162195.1	chrX	114907661	114907861	+	1	NA	NA	NA	179	NM_001081661	75097	Mm.50414	NM_001081661	ENSMUSG00000047079	Ube2dnl2	4930524E20Rik	ubiquitin-conjugating enzyme E2D N-terminal like 2	protein-coding	0.020000	0.517413	
mm_70075.1	chr7	142653113	142653313	-	1	NA	NA	NA	1783	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.005000	0.492537	
mm_46865.1	chr5	113822975	113823175	-	1	NA	NA	NA	7426	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.005000	0.407960	
mm_23927.1	chr3	83766519	83766719	+	1	NA	NA	NA	298	NM_009144	20319	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0.090000	0.686567	
mm_134458.1	chr16	18411856	18412056	-	1	NA	NA	NA	1538	NM_001111063	12846	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.015000	0.582090	
mm_98659.1	chr11	96271368	96271568	+	1	NA	NA	NA	138	NM_008270	15417	Mm.258271	NM_008270	ENSMUSG00000020875	Hoxb9	Hox-2.5	homeobox B9	protein-coding	0.080000	0.651741	
mm_163417.1	chr12	79390276	79390476	+	1	NA	NA	NA	93025	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.000000	0.353234	
mm_63501.1	chr7	127800747	127800947	+	1	NA	NA	NA	238	NM_001040684	101502	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	0.010000	0.477612	
mm_163284.1	chr11	117334074	117334274	-	1	NA	NA	NA	1861	NM_001113488	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.010000	0.592040	
mm_86172.1	chr9	119156965	119157165	-	1	NA	NA	NA	28	NM_146230	235674	Mm.379402	NM_146230	ENSMUSG00000010651	Acaa1b	-	acetyl-Coenzyme A acyltransferase 1B	protein-coding	0.045000	0.582090	
mm_43532.1	chr5	137294522	137294722	+	1	NA	NA	NA	-47	NM_027356	70240	Mm.124666	NM_027356	ENSMUSG00000051502	Ufsp1	2700038N03Rik|D5Ertd655e	UFM1-specific peptidase 1	protein-coding	0.070000	0.636816	20(CCTTTTAGAAGG,+,0.00)
mm_139832.1	chr17	69127356	69127556	+	1	NA	NA	NA	-29354	NM_013813	13823	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.020000	0.532338	
mm_14360.1	chr2	129616197	129616397	+	1	NA	NA	NA	23128	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.045000	0.532338	
mm_43329.1	chr5	135009613	135009813	+	1	NA	NA	NA	257	NR_033794	68758	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.080000	0.656716	
mm_35892.1	chr4	49547839	49548039	-	1	NA	NA	NA	1607	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.020000	0.457711	
mm_2911.1	chr1	132008024	132008224	+	1	NA	NA	NA	519	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.095000	0.751244	
mm_160337.1	chr8	13837793	13837993	-	1	NA	NA	NA	196	NM_153093	231201	Mm.423959	NM_153093	ENSMUSG00000057116	AF366264	Susp4	cDNA sequence AF366264	protein-coding	0.015000	0.512438	
mm_126601.1	chr15	82452279	82452479	+	1	NA	NA	NA	2	NM_010006	13105	Mm.226708	NM_010006	ENSMUSG00000068086	Cyp2d9	Cyp2d|P450-2D	cytochrome P450, family 2, subfamily d, polypeptide 9	protein-coding	0.005000	0.532338	-33(TCCTTTATAAGG,-,0.00),-31(CTTTATAAGGTG,+,0.00)
mm_55822.1	chr6	83054350	83054550	-	1	NA	NA	NA	-71	NR_125891	11993	Mm.386752	NM_007517	ENSMUSG00000068328	Aup1	AA589454	ancient ubiquitous protein 1	protein-coding	0.090000	0.656716	
mm_145380.1	chr18	56926984	56927184	+	1	NA	NA	NA	-1536	NM_177115	320253	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0.015000	0.482587	
mm_73823.1	chr8	117459230	117459430	+	1	NA	NA	NA	65	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.020000	0.517413	
mm_13262.1	chr2	98666358	98666558	+	1	NA	NA	NA	1198801	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.020000	0.333333	
mm_162961.1	chr11	5976134	5976334	-	1	NA	NA	NA	20476	NM_019661	56418	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0.035000	0.651741	
mm_11136.1	chr2	28469686	28469886	+	1	NA	NA	NA	1720	NM_001166031	118451	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	0.020000	0.537313	
mm_126865.1	chr15	89335921	89336121	+	1	NA	NA	NA	1548	NM_019977	56727	Mm.158200	NM_019977	ENSMUSG00000022613	Miox	0610009I10Rik|AI314022|Aldrl6|C85427|RSOR	myo-inositol oxygenase	protein-coding	0.020000	0.592040	
mm_127667.1	chr15	102634883	102635083	+	1	NA	NA	NA	-9519	NM_001310066	223922	Mm.208714	NM_146065	ENSMUSG00000052414	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	0.040000	0.467662	
mm_118451.1	chr14	8367280	8367480	+	1	NA	NA	NA	11383	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.005000	0.517413	
mm_89660.1	chr10	97483292	97483492	+	1	NA	NA	NA	1061	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.005000	0.457711	
mm_39609.1	chr5	24128049	24128249	+	1	NA	NA	NA	1819	NR_037304	100499521		NR_037304	ENSMUSG00000092880	Mir3471-1	mmu-mir-3471-1	microRNA 3471-1	ncRNA	0.000000	0.263682	81(TTTTTTAAAAGG,-,0.00),82(TTTTTAAAAGGC,+,0.00)
mm_22236.1	chr2	174438878	174439078	-	1	NA	NA	NA	61	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.125000	0.736318	
mm_3698.1	chr1	153761140	153761340	+	1	NA	NA	NA	11814	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.010000	0.383085	
mm_139321.1	chr17	48410179	48410379	+	1	NA	NA	NA	279	NM_207219	106821	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	0.055000	0.572139	
mm_96135.1	chr11	60930850	60931050	+	1	NA	NA	NA	917	NR_027800	24082	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	0.005000	0.487562	
mm_40532.1	chr5	57928235	57928435	+	1	NA	NA	NA	210254	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.005000	0.338308	
mm_25740.1	chr3	122899351	122899551	+	1	NA	NA	NA	4379	NM_007980	14079	Mm.28398	NM_007980	ENSMUSG00000023057	Fabp2	Fabpi|I-FABP	fatty acid binding protein 2, intestinal	protein-coding	0.005000	0.338308	21(GTCTTTTAAAAG,-,0.00),23(CTTTTAAAAGAA,+,0.00),71(TCCTTTAAAAAA,-,0.00)
mm_22988.1	chr3	33800049	33800249	+	1	NA	NA	NA	-34	NM_027619	67120	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	0.145000	0.711443	
mm_146631.1	chr18	10182071	10182271	-	1	NA	NA	NA	-379	NM_009071	19877	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.125000	0.686567	
mm_46193.1	chr5	98018131	98018331	-	1	NA	NA	NA	12731	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.010000	0.487562	82(TCCCATAAAGGG,-,0.00)
mm_96544.1	chr11	68767904	68768104	+	1	NA	NA	NA	76089	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.000000	0.482587	-43(GCTTATCAGGCC,+,0.00)
mm_102980.1	chr11	69681699	69681899	-	1	NA	NA	NA	171	NM_030702	80886	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0.090000	0.676617	
mm_94928.1	chr11	29548284	29548484	+	1	NA	NA	NA	-344	NM_001033865	78294	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	0.035000	0.552239	-22(GGCTAGAAAGGC,-,0.00)
mm_14868.1	chr2	148799431	148799631	+	1	NA	NA	NA	692	NM_009978	13012	Mm.20435	NM_009978	ENSMUSG00000027442	Cst8	Cres|Cst-rs1	cystatin 8 (cystatin-related epididymal spermatogenic)	protein-coding	0.000000	0.383085	
mm_167335.1	chr8	71381555	71381755	-	1	NA	NA	NA	297	NM_010150	13864	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	0.165000	0.786070	
mm_148489.1	chr19	4153282	4153482	+	1	NA	NA	NA	-1264	NM_016933	19265	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	0.040000	0.567164	
mm_135670.1	chr16	52411584	52411784	-	1	NA	NA	NA	41397	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.348259	
mm_144923.1	chr18	37680181	37680381	+	1	NA	NA	NA	-177	NM_033574	93699	Mm.247203	NM_033574	ENSMUSG00000103037	Pcdhgb1	-	protocadherin gamma subfamily B, 1	protein-coding	0.050000	0.537313	
mm_118229.1	chr13	111489671	111489871	-	1	NA	NA	NA	270	NM_028487	73274	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.070000	0.646766	
mm_78052.1	chr9	14784581	14784781	+	1	NA	NA	NA	27	NM_018736	17535	Mm.149071	NM_018736	ENSMUSG00000031928	Mre11a	Mre11|Mre11b	MRE11A homolog A, double strand break repair nuclease	protein-coding	0.050000	0.537313	
mm_72158.1	chr8	72183888	72184088	+	1	NA	NA	NA	-5680	NM_197944	209488	Mm.157431	NM_197944	ENSMUSG00000062007	Hsh2d	ALX|Hsh2	hematopoietic SH2 domain containing	protein-coding	0.000000	0.388060	
mm_112662.1	chr13	16026970	16027170	+	1	NA	NA	NA	15219	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.015000	0.497512	
mm_104339.1	chr11	94172270	94172470	-	1	NA	NA	NA	-39084	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.035000	0.547264	
mm_27146.1	chr3	32864510	32864710	-	1	NA	NA	NA	46984	NM_001013024	72607	Mm.316153	NM_001013024	ENSMUSG00000056900	Usp13	2700071E21Rik|AI848077|ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding	0.010000	0.487562	
mm_1480.1	chr1	71557104	71557304	+	1	NA	NA	NA	48	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.085000	0.686567	
mm_57306.1	chr6	124712051	124712251	-	1	NA	NA	NA	27	NM_013536	14791	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0.085000	0.597015	
mm_34465.1	chr4	148140687	148140887	+	1	NA	NA	NA	297	NM_027985	71890	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding	0.070000	0.681592	
mm_149756.1	chr19	22734870	22735070	+	1	NA	NA	NA	-15635	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.005000	0.452736	
mm_94239.1	chr11	3293019	3293219	+	1	NA	NA	NA	2662	NM_019574	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.010000	0.592040	
mm_60470.1	chr7	44477976	44478176	+	1	NA	NA	NA	-6441	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.482587	
mm_134745.1	chr16	23099607	23099807	-	1	NA	NA	NA	-7690	NM_001347179	13682	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0.025000	0.512438	
mm_29185.1	chr3	106543097	106543297	-	1	NA	NA	NA	-4601	NM_001286986	67171	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0.000000	0.238806	-99(GCTTTTAAACAT,+,0.00)
mm_107632.1	chr12	51866026	51866226	+	1	NA	NA	NA	-36590	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.000000	0.457711	
mm_105183.1	chr11	101894299	101894499	-	1	NA	NA	NA	-45	NM_010791	17285	Mm.3404	NM_010791	ENSMUSG00000001493	Meox1	AI385561|D330041M02Rik|Mox-1|Mox1	mesenchyme homeobox 1	protein-coding	0.025000	0.557214	
mm_80863.1	chr9	98498621	98498821	+	1	NA	NA	NA	8184	NM_009034	19660	Mm.12825	NM_009034	ENSMUSG00000032454	Rbp2	Crbp-2|CrbpII|Rbp-2	retinol binding protein 2, cellular	protein-coding	0.045000	0.472637	
mm_32794.1	chr4	116995259	116995459	+	1	NA	NA	NA	11	NM_175244	76608	Mm.251420	NM_175244	ENSMUSG00000046861	Hectd3	1700064K09Rik|AI467540|AW743312	HECT domain containing 3	protein-coding	0.075000	0.646766	
mm_102315.1	chr11	56459266	56459466	-	1	NA	NA	NA	-418379	NM_153079	216749	Mm.213205	NM_153079	ENSMUSG00000037393	Nmur2	Nmu2r	neuromedin U receptor 2	protein-coding	0.060000	0.562189	
mm_150847.1	chr19	44989180	44989380	+	1	NA	NA	NA	-64	NM_011976	26456	Mm.34404	NM_011976	ENSMUSG00000025207	Sema4g	AI507908|AW554132	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	protein-coding	0.105000	0.771144	
mm_78573.1	chr9	36693129	36693329	+	1	NA	NA	NA	9	NM_007391	11451	Mm.4776	NM_007391	ENSMUSG00000032110	Acrv1	Msa63|SP-10	acrosomal vesicle protein 1	protein-coding	0.005000	0.432836	
mm_14977.1	chr2	152107918	152108118	+	1	NA	NA	NA	2494	NM_029688	76650	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.010000	0.492537	
mm_7585.1	chr1	125422069	125422269	-	1	NA	NA	NA	13558	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.010000	0.402985	
mm_46406.1	chr5	104093061	104093261	-	1	NA	NA	NA	-15553	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.045000	0.502488	
mm_164442.1	chr16	49855163	49855363	+	1	NA	NA	NA	-391	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.055000	0.671642	
mm_37755.1	chr4	129640970	129641170	-	1	NA	NA	NA	-5	NM_001199695	109658	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	0.100000	0.636816	
mm_24131.1	chr3	88212655	88212855	+	1	NA	NA	NA	-2416	NR_037276	100526540		NR_037276	ENSMUSG00000092988	Mir3093	mir-3093|mmu-mir-3093	microRNA 3093	ncRNA	0.005000	0.442786	-6(GCCTATAAGAGG,-,0.00)
mm_126245.1	chr15	79005178	79005378	+	1	NA	NA	NA	3055	NR_105921	102465577		NR_105921	ENSMUSG00000099180	Mir6956	Gm27880|mmu-mir-6956	microRNA 6956	ncRNA	0.015000	0.577114	
mm_119592.1	chr14	50951532	50951732	+	1	NA	NA	NA	-4509	NM_001123371	667034	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	0.020000	0.517413	
mm_63333.1	chr7	126950504	126950704	+	1	NA	NA	NA	69	NM_001252566	233878	Mm.283926	NM_144926	ENSMUSG00000030683	Sez6l2	AI835913|AW121566|BSRP-A|Psk1	seizure related 6 homolog like 2	protein-coding	0.040000	0.606965	31(CCTCATAAGGGC,+,0.00)
mm_106830.1	chr12	8001743	8001943	+	1	NA	NA	NA	24166	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.447761	-84(TCTTTAATAGTT,+,0.00)
mm_145803.1	chr18	65381961	65382161	+	1	NA	NA	NA	11827	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.015000	0.507463	
mm_76430.1	chr8	84978432	84978632	-	1	NA	NA	NA	216	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.110000	0.711443	
mm_151552.1	chr19	59458622	59458822	+	1	NA	NA	NA	32	NM_010132	13797	Mm.245394	NM_010132	ENSMUSG00000043969	Emx2	Pdo	empty spiracles homeobox 2	protein-coding	0.040000	0.497512	-100(CACTTTAAAGAG,-,0.00),-98(CTTTAAAGAGTC,+,0.00)
mm_54917.1	chr6	47799154	47799354	-	1	NA	NA	NA	4398	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.020000	0.492537	87(ACCTTTATAGGG,+,0.00),87(ACCTTTATAGGG,-,0.00),89(CTTTATAGGGCG,+,0.00)
mm_168057.1	chrY	90825207	90825407	-	1	NA	NA	NA	14099	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.055000	0.611940	
mm_134760.1	chr16	23233485	23233685	-	1	NA	NA	NA	7564	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.020000	0.542289	
mm_10408.1	chr2	13578744	13578944	+	1	NA	NA	NA	4533	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.010000	0.482587	
mm_151247.1	chr19	53903718	53903918	+	1	NA	NA	NA	467	NM_001168491	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.145000	0.781095	
mm_128050.1	chr15	25764996	25765196	-	1	NA	NA	NA	-78202	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.035000	0.562189	
mm_25871.1	chr3	130060679	130060879	+	1	NA	NA	NA	128	NM_207209	99683	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.160000	0.781095	
mm_105627.1	chr11	106899933	106900133	-	1	NA	NA	NA	20682	NM_025481	66313	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	0.005000	0.343284	
mm_115047.1	chr13	100107979	100108179	+	1	NA	NA	NA	60	NM_011353	20365	Mm.286177	NM_011353	ENSMUSG00000021643	Serf1	4F5|Msmac1|m4F5	small EDRK-rich factor 1	protein-coding	0.145000	0.751244	
mm_953.1	chr1	57774655	57774855	+	1	NA	NA	NA	-106	NM_144882	67198	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.115000	0.716418	
mm_116393.1	chr13	41216853	41217053	-	1	NA	NA	NA	3209	NM_001311121	54326	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0.010000	0.398010	
mm_166509.1	chr6	8531987	8532187	+	1	NA	NA	NA	12029	NM_001286729	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.010000	0.343284	66(TGCTTTTAAAAC,-,0.00),67(GCTTTTAAAACG,+,0.00)
mm_116123.1	chr13	28951346	28951546	-	1	NA	NA	NA	2236	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.060000	0.557214	
mm_126333.1	chr15	79894927	79895127	+	1	NA	NA	NA	4	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.010000	0.462687	-28(GCTTTTATATCT,+,0.00)
mm_112477.1	chr13	5868721	5868921	+	1	NA	NA	NA	7332	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.010000	0.402985	49(CTTTTAAGAGAC,+,0.00)
mm_163434.1	chr12	85397379	85397579	-	1	NA	NA	NA	-22762	NM_026775	68581	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.015000	0.462687	
mm_41685.1	chr5	100429627	100429827	+	1	NA	NA	NA	-192	NR_034038	100503199	Mm.392282	NR_034038	ENSMUSG00000097772	5430416N02Rik	100041797|Adapt33|Gm3514	RIKEN cDNA 5430416N02 gene	ncRNA	0.080000	0.631841	-43(GCCCAGAAAAGG,-,0.00)
mm_98093.1	chr11	86603927	86604127	+	1	NA	NA	NA	-19869	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.000000	0.383085	
mm_149784.1	chr19	23140009	23140209	+	1	NA	NA	NA	-1117	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.015000	0.417910	
mm_116426.1	chr13	41847386	41847586	-	1	NA	NA	NA	2	NM_175417	109254	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.030000	0.557214	
mm_113037.1	chr13	23551747	23551947	+	1	NA	NA	NA	-204	NM_175655	319157	Mm.442307	NM_175655	ENSMUSG00000069274	Hist1h4f	-	histone cluster 1, H4f	protein-coding	0.030000	0.462687	
mm_70353.1	chr8	5210669	5210869	+	1	NA	NA	NA	-105482	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.010000	0.472637	-96(CATTCTAAAAGC,-,0.00),-34(CCCTATAAAGAG,+,0.00),-34(CCCTATAAAGAG,-,0.00)
mm_124435.1	chr14	118511291	118511491	-	1	NA	NA	NA	81081	NR_105815	102465208		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0.005000	0.358209	
mm_21186.1	chr2	155249954	155250154	-	1	NA	NA	NA	13446	NM_001291108	67068	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	0.015000	0.527363	
mm_162584.1	chr1	180312771	180312971	-	1	NA	NA	NA	-17605	NM_001081175	320404	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0.025000	0.492537	
mm_99191.1	chr11	100940032	100940232	+	1	NA	NA	NA	-592	NM_011486	20848	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.030000	0.457711	
mm_120176.1	chr14	61172892	61173092	+	1	NA	NA	NA	34535	NM_172809	50720	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik|mKIAA0730	sacsin	protein-coding	0.120000	0.701493	
mm_52440.1	chr6	113623955	113624155	+	1	NA	NA	NA	34	NM_009507	22346	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0.135000	0.716418	
mm_16272.1	chr2	173719332	173719532	+	1	NA	NA	NA	17	NM_029308	75485	Mm.308031	NM_029308	ENSMUSG00000057047	1700010B08Rik	-	RIKEN cDNA 1700010B08 gene	protein-coding	0.010000	0.497512	
mm_36959.1	chr4	109156716	109156916	-	1	NA	NA	NA	-38780	NM_001134791	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.025000	0.502488	
mm_169083.1	chr13	34394449	34394649	-	1	NA	NA	NA	-49367	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.035000	0.537313	
mm_3686.1	chr1	153749370	153749570	+	1	NA	NA	NA	44	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.040000	0.482587	
mm_133832.1	chr16	95900444	95900644	+	1	NA	NA	NA	-1831	NR_040485	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.035000	0.512438	
mm_7038.1	chr1	87100505	87100705	-	1	NA	NA	NA	1001	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.030000	0.582090	
mm_34636.1	chr4	150614486	150614686	+	1	NA	NA	NA	37588	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.040000	0.577114	
mm_41086.1	chr5	87680757	87680957	+	1	NA	NA	NA	14649	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.427861	
mm_125880.1	chr15	75641787	75641987	+	1	NA	NA	NA	25203	NM_011759	22701	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0.010000	0.422886	
mm_167301.1	chr8	56288322	56288522	+	1	NA	NA	NA	-6130	NM_008278	15446	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.010000	0.452736	
mm_48647.1	chr5	145854970	145855170	-	1	NA	NA	NA	24784	NM_007818	13112	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	0.010000	0.407960	
mm_154951.1	chrX	36602064	36602264	+	1	NA	NA	NA	3971	NM_016783	53328	Mm.9052	NM_016783	ENSMUSG00000006373	Pgrmc1	AA415812|HPR6.6|PPMR|Vema	progesterone receptor membrane component 1	protein-coding	0.010000	0.472637	-53(GTCTTTAAAGAG,+,0.00),-53(GTCTTTAAAGAG,-,0.00),-51(CTTTAAAGAGGG,+,0.00)
mm_53497.1	chr6	135362212	135362412	+	1	NA	NA	NA	-619	NM_010128	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.005000	0.457711	
mm_46753.1	chr5	112228690	112228890	-	1	NA	NA	NA	158	NR_033657	330166	Mm.44854	NR_003718	ENSMUSG00000097767	Miat	3632434I06|A230057G18Rik|Rncr2|gomafu	myocardial infarction associated transcript (non-protein coding)	ncRNA	0.105000	0.681592	
mm_106952.1	chr12	8791709	8791909	+	1	NA	NA	NA	20413	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.015000	0.567164	
mm_114198.1	chr13	55925928	55926128	+	1	NA	NA	NA	-94603	NM_011097	18740	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.005000	0.417910	-93(CTCTTGATAAGG,-,0.00),65(GCTTTTAAATGG,+,0.00),65(GCTTTTAAATGG,-,0.00)
mm_64486.1	chr7	143067339	143067539	+	1	NA	NA	NA	-1929	NM_020285	56844	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.010000	0.417910	
mm_19716.1	chr2	104410461	104410661	-	1	NA	NA	NA	-227	NM_001033347	241589	Mm.358909	NM_001033347	ENSMUSG00000068373	D430041D05Rik	9630056G07Rik|G2	RIKEN cDNA D430041D05 gene	protein-coding	0.115000	0.676617	
mm_35608.1	chr4	43046106	43046306	-	1	NA	NA	NA	14	NR_045567	230088	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0.075000	0.656716	
mm_39220.1	chr4	156197417	156197617	-	1	NA	NA	NA	-29	NM_021604	11603	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0.145000	0.830846	
mm_24728.1	chr3	95282854	95283054	+	1	NA	NA	NA	19	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.065000	0.606965	
mm_111328.1	chr12	86490118	86490318	-	1	NA	NA	NA	68574	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.005000	0.547264	
mm_157999.1	chrX	94541940	94542140	-	1	NA	NA	NA	34	NM_019791	94275	Mm.27578	NM_019791	ENSMUSG00000025151	Maged1	2810433C11Rik|5430405L04Rik|DXBwg1492e|Dlixin|Dlxin-1|Dlxin1|MAGE-D1|NRAGE|mFLJ00163	melanoma antigen, family D, 1	protein-coding	0.095000	0.616915	
mm_116470.1	chr13	43481005	43481205	-	1	NA	NA	NA	-132	NM_019930	56705	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.185000	0.830846	
mm_99916.1	chr11	110180097	110180297	+	1	NA	NA	NA	-12044	NM_147220	217262	Mm.291459	NM_147220	ENSMUSG00000041797	Abca9	D630040K07Rik	ATP-binding cassette, sub-family A (ABC1), member 9	protein-coding	0.040000	0.527363	
mm_46611.1	chr5	107976122	107976322	-	1	NA	NA	NA	10855	NM_026062	67266	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0.030000	0.442786	-7(CTTTTTAAAAAC,+,0.00)
mm_62066.1	chr7	92561448	92561648	+	1	NA	NA	NA	399	NM_001162918	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.090000	0.606965	
mm_113347.1	chr13	31806676	31806876	+	1	NA	NA	NA	130	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.070000	0.537313	
mm_163859.1	chr14	19418560	19418760	+	1	NA	NA	NA	183927	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.030000	0.343284	
mm_46204.1	chr5	98031282	98031482	-	1	NA	NA	NA	-420	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.055000	0.557214	
mm_9640.1	chr1	177130973	177131173	-	1	NA	NA	NA	117694	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.005000	0.373134	
mm_88415.1	chr10	77033210	77033410	+	1	NA	NA	NA	98	NM_031196	20509	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.070000	0.587065	
mm_28947.1	chr3	100141619	100141819	-	1	NA	NA	NA	20684	NM_175552	269470	Mm.24591	NM_175552	ENSMUSG00000033285	Wdr3	AW546279|D030020G18Rik	WD repeat domain 3	protein-coding	0.015000	0.452736	
mm_51669.1	chr6	86404095	86404295	+	1	NA	NA	NA	-24	NM_001164079	21841	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	0.075000	0.631841	
mm_131857.1	chr16	23078907	23079107	+	1	NA	NA	NA	20707	NM_001102412	16644	Mm.2160	NM_023125	ENSMUSG00000022875	Kng1	Kng	kininogen 1	protein-coding	0.010000	0.447761	
mm_116856.1	chr13	54762860	54763060	-	1	NA	NA	NA	3480	NM_033610	104069	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	0.000000	0.517413	
mm_56785.1	chr6	116637735	116637935	-	1	NA	NA	NA	8212	NR_106010	102466793		NR_106010	ENSMUSG00000098334	Mir7043	Gm27776|mmu-mir-7043	microRNA 7043	ncRNA	0.010000	0.532338	
mm_143175.1	chr17	57244238	57244438	-	1	NA	NA	NA	3132	NM_001308074	78308	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0.020000	0.577114	
mm_103.1	chr1	9545855	9546055	+	1	NA	NA	NA	547	NM_021511	59014	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	0.090000	0.636816	
mm_148185.1	chr18	78596801	78597001	-	1	NA	NA	NA	49	NM_207651	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.010000	0.477612	
mm_115257.1	chr13	110399869	110400069	+	1	NA	NA	NA	4925	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.015000	0.333333	
mm_24956.1	chr3	96645494	96645694	+	1	NA	NA	NA	10	NM_001302471	213119	Mm.32741	NM_001081053	ENSMUSG00000090210	Itga10	A630048L14	integrin, alpha 10	protein-coding	0.030000	0.577114	
mm_86270.1	chr9	121718870	121719070	-	1	NA	NA	NA	-211	NM_010918	18087	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0.095000	0.582090	
mm_43630.1	chr5	138187410	138187610	+	1	NA	NA	NA	-25	NM_178612	66455	Mm.24592	NM_178612	ENSMUSG00000036968	Cnpy4	2610019P18Rik	canopy FGF signaling regulator 4	protein-coding	0.045000	0.492537	-10(TTTTTTAAAGCT,+,0.00)
mm_24101.1	chr3	88138697	88138897	+	1	NA	NA	NA	-3575	NM_001310587	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.035000	0.681592	
mm_26657.1	chr3	154597110	154597310	+	1	NA	NA	NA	-112	NM_172474	209584	Mm.347513	NM_172474	ENSMUSG00000047583	Tyw3	5230400J09Rik	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	protein-coding	0.050000	0.587065	
mm_170057.1	chr17	30612505	30612705	-	1	NA	NA	NA	54	NM_025374	109801	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding	0.065000	0.671642	
mm_56172.1	chr6	88012113	88012313	-	1	NA	NA	NA	7582	NM_001293654	19349	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.005000	0.512438	-31(TTCTTTAAATGG,-,0.00)
mm_143476.1	chr17	71256757	71256957	-	1	NA	NA	NA	52203	NM_001164885	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.020000	0.547264	
mm_698.1	chr1	40580426	40580626	+	1	NA	NA	NA	299	NM_177084	110895	Mm.108602	NM_177084	ENSMUSG00000026065	Slc9a4	AW990558|D730009J23Rik|NHE4	solute carrier family 9 (sodium/hydrogen exchanger), member 4	protein-coding	0.050000	0.522388	
mm_45775.1	chr5	87091981	87092181	-	1	NA	NA	NA	474	NM_001029867	231396	Mm.439851	NM_001029867	ENSMUSG00000070704	Ugt2b36	-	UDP glucuronosyltransferase 2 family, polypeptide B36	protein-coding	0.005000	0.388060	
mm_8402.1	chr1	151500857	151501057	-	1	NA	NA	NA	-134	NM_011277	19821	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0.135000	0.771144	
mm_128139.1	chr15	31503441	31503641	-	1	NA	NA	NA	27496	NM_172606	223455	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0.005000	0.243781	
mm_147281.1	chr18	39486979	39487179	-	1	NA	NA	NA	166	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.020000	0.547264	
mm_129010.1	chr15	74914028	74914228	-	1	NA	NA	NA	-32424	NM_025929	67038	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.025000	0.502488	
mm_99925.1	chr11	110967963	110968163	+	1	NA	NA	NA	30	NM_001252207	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.015000	0.383085	
mm_117438.1	chr13	74727236	74727436	-	1	NA	NA	NA	6925	NM_001301158	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.025000	0.477612	
mm_115566.1	chr13	9765061	9765261	-	1	NA	NA	NA	160	NM_001347474	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.100000	0.611940	
mm_155666.1	chrX	88607134	88607334	+	1	NA	NA	NA	152319	NR_035440	100316809		NR_035440	ENSMUSG00000084535	Mir1906-1	Mir1906|Mirn1906|mmu-mir-1906|mmu-mir-1906-1	microRNA 1906-1	ncRNA	0.010000	0.303483	
mm_66199.1	chr7	34230196	34230396	-	1	NA	NA	NA	40	NM_008155	14751	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	0.140000	0.726368	
mm_103799.1	chr11	82890484	82890684	-	1	NA	NA	NA	40	NR_102719	19364	Mm.9286	NM_011235	ENSMUSG00000018841	Rad51d	R51H3|Rad51l3|TRAD|Trad-d5	RAD51 paralog D	protein-coding	0.075000	0.636816	
mm_52169.1	chr6	99094634	99094834	+	1	NA	NA	NA	-66436	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.035000	0.517413	
mm_117577.1	chr13	86050274	86050474	-	1	NA	NA	NA	-3579	NM_007749	12867	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	0.005000	0.437811	
mm_110696.1	chr12	69197511	69197711	-	1	NA	NA	NA	400	NR_033222	414085	Mm.256223	NR_033222	ENSMUSG00000097061	9330151L19Rik	-	RIKEN cDNA 9330151L19 gene	ncRNA	0.130000	0.766169	
mm_155170.1	chrX	53434847	53435047	+	1	NA	NA	NA	29	NR_034074	69501	Mm.63828	NM_175147	ENSMUSG00000060967	Etd	1700030K02Rik	embryonic testis differentiation	ncRNA	0.020000	0.472637	
mm_114826.1	chr13	91930533	91930733	+	1	NA	NA	NA	-53748	NM_198415	76722	Mm.316438	NM_198415	ENSMUSG00000021622	Ckmt2	2300008A19Rik|ScCKmit	creatine kinase, mitochondrial 2	protein-coding	0.005000	0.407960	
mm_24253.1	chr3	89183069	89183269	+	1	NA	NA	NA	-56	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.035000	0.641791	
mm_5602.1	chr1	39570914	39571114	-	1	NA	NA	NA	6333	NM_001033135	67702	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4|OTTMUSG00000026591	ring finger protein 149	protein-coding	0.005000	0.402985	
mm_92861.1	chr10	81596389	81596589	-	1	NA	NA	NA	4411	NM_053254	114606	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0.005000	0.432836	
mm_105050.1	chr11	100620087	100620287	-	1	NA	NA	NA	-19	NM_019795	56354	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0.040000	0.562189	-49(CCTCATAAAAGG,-,0.00)
mm_52449.1	chr6	113667978	113668178	+	1	NA	NA	NA	-28972	NM_001347356	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.005000	0.462687	
mm_68819.1	chr7	126082317	126082517	-	1	NA	NA	NA	-6	NM_001101488	269994	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.180000	0.810945	
mm_8272.1	chr1	139631855	139632055	-	1	NA	NA	NA	-71733	NM_015780	50702	Mm.220362	NM_015780	ENSMUSG00000057037	Cfhr1	AI194696|CFHRB|Cfhl1	complement factor H-related 1	protein-coding	0.000000	0.467662	
mm_44390.1	chr5	17829113	17829313	-	1	NA	NA	NA	6683	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.015000	0.368159	
mm_111613.1	chr12	102401527	102401727	-	1	NA	NA	NA	38186	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.010000	0.512438	
mm_56346.1	chr6	92943276	92943476	-	1	NA	NA	NA	2794	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.105000	0.676617	
mm_48817.1	chr5	149015760	149015960	-	1	NA	NA	NA	8898	NR_040429	100503307	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	OTTMUSG00000021225	predicted gene 15408	ncRNA	0.055000	0.452736	
mm_132039.1	chr16	27422979	27423179	+	1	NA	NA	NA	34123	NM_001289436	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.000000	0.388060	
mm_50575.1	chr6	49051876	49052076	+	1	NA	NA	NA	15458	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.005000	0.517413	
mm_5915.1	chr1	55027379	55027579	-	1	NA	NA	NA	-1	NM_031179	81898	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	0.100000	0.651741	-98(GGCTTTTTAAGG,-,0.00),-96(CTTTTTAAGGAA,+,0.00)
mm_159904.1	chr6	40613007	40613207	-	1	NA	NA	NA	203	NM_001001451	387513	Mm.377920	NM_001001451	ENSMUSG00000058250	Tas2r138	T2R138|Tas2r38|mt2r31	taste receptor, type 2, member 138	protein-coding	0.015000	0.497512	
mm_143096.1	chr17	57080724	57080924	-	1	NA	NA	NA	-2314	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.060000	0.572139	
mm_163556.1	chr13	24024326	24024526	+	1	NA	NA	NA	-33212	NM_145399	214189	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.025000	0.606965	
mm_102567.1	chr11	61493908	61494108	-	1	NA	NA	NA	258	NM_001291037	23939	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7	mitogen-activated protein kinase 7	protein-coding	0.095000	0.736318	
mm_24778.1	chr3	95538682	95538882	+	1	NA	NA	NA	11996	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.025000	0.398010	
mm_107498.1	chr12	38829655	38829855	+	1	NA	NA	NA	46044	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.010000	0.248756	
mm_64300.1	chr7	141861615	141861815	+	1	NA	NA	NA	22643	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.010000	0.497512	
mm_122386.1	chr14	40899294	40899494	-	1	NA	NA	NA	-6429	NM_177816	328381	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.020000	0.482587	
mm_70467.1	chr8	11952567	11952767	+	1	NA	NA	NA	112146	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	0.005000	0.442786	
mm_29117.1	chr3	104961640	104961840	-	1	NA	NA	NA	-31	NM_009520	22414	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.155000	0.800995	
mm_23126.1	chr3	37654672	37654872	+	1	NA	NA	NA	14825	NM_001305442	24063	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty homolog 1 (Drosophila)	protein-coding	0.010000	0.447761	
mm_137333.1	chr17	25089315	25089515	+	1	NA	NA	NA	-8301	NM_001001183	407831	Mm.34379	NM_001001183	ENSMUSG00000024168	Tmem204	-	transmembrane protein 204	protein-coding	0.030000	0.572139	
mm_7110.1	chr1	89931090	89931290	-	1	NA	NA	NA	-14	NM_010262	14472	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.105000	0.636816	
mm_30572.1	chr4	3809008	3809208	+	1	NA	NA	NA	26547	NM_026147	67427	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.005000	0.378109	
mm_64019.1	chr7	140261389	140261589	+	1	NA	NA	NA	14108	NM_001128145	244234	Mm.85125	NM_175533	ENSMUSG00000054672	5830411N06Rik	Scart2	RIKEN cDNA 5830411N06 gene	protein-coding	0.005000	0.552239	
mm_97811.1	chr11	82962229	82962429	+	1	NA	NA	NA	-1648	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.020000	0.462687	
mm_137956.1	chr17	32993042	32993242	+	1	NA	NA	NA	3	NM_001045559	240067	Mm.246667	NM_199020	ENSMUSG00000053390	Zfp952	BC057593|C920016K16Rik	zinc finger protein 952	protein-coding	0.045000	0.507463	
mm_19005.1	chr2	76886274	76886474	-	1	NA	NA	NA	96173	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.005000	0.462687	-2(GCTTATATACCT,+,0.00)
mm_154661.1	chrX	7864659	7864859	+	1	NA	NA	NA	-13547	NM_138606	18715	Mm.347478	NM_138606	ENSMUSG00000031155	Pim2	DXCch3|Pim-2	proviral integration site 2	protein-coding	0.005000	0.467662	
mm_172998.1	chrM	1454	1654	+	1	NA	NA	NA	NA	NA									0.010000	0.298507	8(CCTTTAATAGTG,+,0.00),51(AGGCCTAAAAGC,-,0.00)
mm_54503.1	chr6	35510505	35510705	-	1	NA	NA	NA	29283	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.402985	
mm_44921.1	chr5	35729173	35729373	-	1	NA	NA	NA	3	NM_194344	231147	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.025000	0.626866	
mm_72957.1	chr8	92815309	92815509	+	1	NA	NA	NA	-11888	NM_008610	17390	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	0.025000	0.527363	
mm_76376.1	chr8	84835235	84835435	-	1	NA	NA	NA	3053	NM_183358	102060	Mm.489649	NM_183358	ENSMUSG00000033751	Gadd45gip1	2310040G17Rik|AI425883|Crif1|MRP-L59|Plinp1	growth arrest and DNA-damage-inducible, gamma interacting protein 1	protein-coding	0.015000	0.547264	
mm_55810.1	chr6	83004852	83005052	-	1	NA	NA	NA	28519	NM_010070	13448	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.015000	0.517413	
mm_42336.1	chr5	114903362	114903562	+	1	NA	NA	NA	6528	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.010000	0.323383	
mm_110751.1	chr12	69986970	69987170	-	1	NA	NA	NA	-68	NM_022028	64010	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0.170000	0.786070	
mm_31791.1	chr4	63734333	63734533	+	1	NA	NA	NA	10680	NM_177371	326623	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0.015000	0.507463	29(CCTTTTCTAGAG,+,0.00)
mm_142286.1	chr17	40232513	40232713	-	1	NA	NA	NA	9645	NM_009639	11572	Mm.14138	NM_009639	ENSMUSG00000025433	Crisp3	Aeg2|CRISP-3|CRS3|SGP28	cysteine-rich secretory protein 3	protein-coding	0.005000	0.348259	
mm_21003.1	chr2	152343895	152344095	-	1	NA	NA	NA	65	NM_175093	228775	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	0.090000	0.661692	
mm_147147.1	chr18	36560118	36560318	-	1	NA	NA	NA	-385	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.045000	0.507463	
mm_81809.1	chr9	117856812	117857012	+	1	NA	NA	NA	-183610	NM_001286508	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.030000	0.537313	
mm_160422.1	chr8	85014310	85014510	-	1	NA	NA	NA	-2	NM_001130194	212989	Mm.215154	NM_001130194	ENSMUSG00000052819	Best2	Vmd2l1	bestrophin 2	protein-coding	0.010000	0.601990	
mm_87468.1	chr10	51491333	51491533	+	1	NA	NA	NA	535	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.010000	0.492537	
mm_34053.1	chr4	138304611	138304811	+	1	NA	NA	NA	-27	NM_007838	13200	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	0.095000	0.656716	
mm_136094.1	chr16	85056318	85056518	-	1	NA	NA	NA	84207	NR_045889	100038614	Mm.441351	NR_045889		Gm10791	ENSMUSG00000074933	predicted gene 10791	ncRNA	0.040000	0.582090	
mm_15838.1	chr2	164715177	164715377	+	1	NA	NA	NA	-28	NM_001040055	641368	Mm.422380	NM_001040055	ENSMUSG00000074593	Spint5	Gm14316|OTTMUSG00000016293	serine protease inhibitor, Kunitz type 5	protein-coding	0.020000	0.542289	
mm_100823.1	chr11	5261616	5261816	-	1	NA	NA	NA	-106	NM_032396	84035	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	0.160000	0.825871	
mm_64958.1	chr7	16604403	16604603	-	1	NA	NA	NA	-9321	NR_136928	102634559	Mm.421602	NR_136928	ENSMUSG00000100583	Gm29443	-	predicted gene 29443	ncRNA	0.005000	0.313433	
mm_35941.1	chr4	53094814	53095014	-	1	NA	NA	NA	64981	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.000000	0.447761	
mm_30554.1	chr4	3697237	3697437	+	1	NA	NA	NA	-17627	NR_028126	70720	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.000000	0.368159	
mm_97583.1	chr11	78945146	78945346	+	1	NA	NA	NA	19955	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.577114	
mm_164980.1	chr19	8839231	8839431	-	1	NA	NA	NA	3	NM_008144	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.005000	0.572139	
mm_11939.1	chr2	52857748	52857948	+	1	NA	NA	NA	-20	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.155000	0.786070	
mm_83306.1	chr9	44041053	44041253	-	1	NA	NA	NA	-2231	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.005000	0.572139	
mm_162670.1	chr10	7325598	7325798	+	1	NA	NA	NA	-113461	NM_172546	215748	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.010000	0.407960	-98(CAGTATTAAAAG,-,0.00)
mm_70850.1	chr8	23446883	23447083	+	1	NA	NA	NA	35481	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding	0.005000	0.462687	
mm_152666.1	chr19	14597061	14597261	-	1	NA	NA	NA	52	NM_001302951	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.160000	0.776119	
mm_29106.1	chr3	104818392	104818592	-	1	NA	NA	NA	71	NM_001163440	17454	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0.045000	0.641791	
mm_132821.1	chr16	45224057	45224257	+	1	NA	NA	NA	-180	NM_001037719	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.015000	0.467662	
mm_81099.1	chr9	106429328	106429528	+	1	NA	NA	NA	17	NM_009082	19944	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	0.055000	0.557214	-21(CCCTTTCTAGGC,+,0.00)
mm_545.1	chr1	38018901	38019101	+	1	NA	NA	NA	20991	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.005000	0.358209	
mm_148417.1	chr19	3935979	3936179	+	1	NA	NA	NA	893	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.040000	0.606965	
mm_139642.1	chr17	57377515	57377715	+	1	NA	NA	NA	18929	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.338308	
mm_119599.1	chr14	51007863	51008063	+	1	NA	NA	NA	34	NM_029145	75019	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	0.010000	0.502488	-37(GTGTTTAAAAGC,-,0.00)
mm_19360.1	chr2	91084479	91084679	-	1	NA	NA	NA	-12099	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.030000	0.562189	
mm_103120.1	chr11	70185132	70185332	-	1	NA	NA	NA	18609	NM_010796	17312	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	0.020000	0.432836	
mm_124283.1	chr14	103048604	103048804	-	1	NA	NA	NA	1692	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.015000	0.477612	
mm_128503.1	chr15	52786127	52786327	-	1	NA	NA	NA	73782	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.020000	0.437811	
mm_119126.1	chr14	31137974	31138174	+	1	NA	NA	NA	3221	NM_027289	70021	Mm.261681	NM_027289	ENSMUSG00000071547	Nt5dc2	2510015F01Rik	5'-nucleotidase domain containing 2	protein-coding	0.040000	0.601990	
mm_143213.1	chr17	62882037	62882237	-	1	NA	NA	NA	-820	NM_010109	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.070000	0.666667	
mm_51891.1	chr6	90609376	90609576	+	1	NA	NA	NA	4596	NM_027868	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.015000	0.582090	
mm_82168.1	chr9	123840551	123840751	+	1	NA	NA	NA	11010	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.020000	0.393035	
mm_79343.1	chr9	53403155	53403355	+	1	NA	NA	NA	-2031	NM_029247	75311	Mm.26078	NM_029247	ENSMUSG00000005131	4930550C14Rik	AU017961	RIKEN cDNA 4930550C14 gene	protein-coding	0.025000	0.417910	1(TCTTATAAACAC,+,0.00)
mm_151463.1	chr19	58606280	58606480	+	1	NA	NA	NA	51	NR_038136	69055	Mm.396318	NR_038136	ENSMUSG00000100001	1810007D17Rik	-	RIKEN cDNA 1810007D17 gene	ncRNA	0.025000	0.482587	
mm_101498.1	chr11	31824447	31824647	-	1	NA	NA	NA	0	NR_102310	414116	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.030000	0.527363	
mm_166960.1	chr7	44479981	44480181	+	1	NA	NA	NA	-4436	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.492537	
mm_54811.1	chr6	42324477	42324677	-	1	NA	NA	NA	63	NM_001286584	76156	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	0.150000	0.830846	
mm_118621.1	chr14	21076923	21077123	+	1	NA	NA	NA	871	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.000000	0.338308	85(GCCTTTTTAAAA,-,0.00),87(CTTTTTAAAAAG,+,0.00),87(CTTTTTAAAAAG,-,0.00)
mm_46817.1	chr5	113138382	113138582	-	1	NA	NA	NA	103	NM_001347397	243219	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.060000	0.671642	
mm_493.1	chr1	36780019	36780219	+	1	NA	NA	NA	1135	NM_001289612	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.010000	0.462687	
mm_5430.1	chr1	34560850	34561050	-	1	NA	NA	NA	-7	NM_009356	21756	Mm.14418	NM_009356	ENSMUSG00000037529	Prss40	Tesp2	protease, serine 40	protein-coding	0.055000	0.626866	
mm_4990.1	chr1	191743028	191743228	+	1	NA	NA	NA	24733	NM_001134829	226856	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0.000000	0.343284	
mm_53672.1	chr6	141685664	141685864	+	1	NA	NA	NA	56246	NM_020495	28253	Mm.272223	NM_020495	ENSMUSG00000030236	Slco1b2	7330442B20Rik|OATP-C|OATP2|Oatp1b2|Oatp4|Slc21a10|Slc21a6|lst-1|mlst-1	solute carrier organic anion transporter family, member 1b2	protein-coding	0.000000	0.363184	-56(GCATTTATAGTG,+,0.00)
mm_98083.1	chr11	86577347	86577547	+	1	NA	NA	NA	6711	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.005000	0.532338	
mm_123472.1	chr14	65974812	65975012	-	1	NA	NA	NA	6429	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.025000	0.562189	
mm_51101.1	chr6	67271870	67272070	+	1	NA	NA	NA	4991	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.065000	0.462687	
mm_50214.1	chr6	42286566	42286766	+	1	NA	NA	NA	-19	NM_013491	12723	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	0.015000	0.611940	-34(AGCTATAAATAG,-,0.00)
mm_12112.1	chr2	61593050	61593250	+	1	NA	NA	NA	53	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.075000	0.631841	
mm_105853.1	chr11	113750715	113750915	-	1	NA	NA	NA	345	NM_020006	56699	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.045000	0.597015	
mm_98917.1	chr11	98252976	98253176	+	1	NA	NA	NA	-9530	NR_039579	100628613		NR_039579	ENSMUSG00000093176	Mir5119	mmu-mir-5119|mu-mir-5119	microRNA 5119	ncRNA	0.000000	0.273632	5(GTTTTAATAGCA,+,0.00),51(CTGTCTATAGGG,-,0.00)
mm_111721.1	chr12	103737816	103738016	-	1	NA	NA	NA	273	NM_009244	20701	Mm.439692	NM_009244	ENSMUSG00000071178	Serpina1b	D12Ucla2|Dom2|PI2|Spi1-2	serine (or cysteine) preptidase inhibitor, clade A, member 1B	protein-coding	0.000000	0.492537	
mm_26053.1	chr3	135823955	135824155	+	1	NA	NA	NA	-1224	NM_026228	67547	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.005000	0.507463	
mm_109785.1	chr12	3247974	3248174	-	1	NA	NA	NA	12283	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.005000	0.388060	
mm_39615.1	chr5	24383409	24383609	+	1	NA	NA	NA	8634	NM_001002897	213948	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0.060000	0.626866	
mm_63235.1	chr7	126502540	126502740	+	1	NA	NA	NA	-215	NM_001347658	233871	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.055000	0.671642	
mm_55966.1	chr6	85820849	85821049	-	1	NA	NA	NA	23	NM_023493	69049	Mm.441449	NM_023493	ENSMUSG00000079494	Nat8f5	1810018F03Rik|Cml5	N-acetyltransferase 8 (GCN5-related) family member 5	protein-coding	0.015000	0.522388	
mm_17839.1	chr2	34371033	34371233	-	1	NA	NA	NA	912	NM_001290576	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.085000	0.641791	
mm_31970.1	chr4	88124337	88124537	+	1	NA	NA	NA	2397	NR_030478	735282		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	0.005000	0.412935	
mm_85225.1	chr9	97090727	97090927	-	1	NA	NA	NA	20214	NM_138756	192287	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.000000	0.288557	
mm_105528.1	chr11	106300718	106300918	-	1	NA	NA	NA	1078	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.030000	0.577114	
mm_124881.1	chr15	10225145	10225345	+	1	NA	NA	NA	1339	NM_001253781	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.005000	0.417910	
mm_73415.1	chr8	106058711	106058911	+	1	NA	NA	NA	-792	NM_010901	18021	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.030000	0.497512	
mm_117431.1	chr13	74563717	74563917	-	1	NA	NA	NA	-69867	NM_146231	235956	Mm.296909	NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.035000	0.512438	
mm_109265.1	chr12	109544836	109545036	+	1	NA	NA	NA	395	NR_037313	100499530		NR_037313	ENSMUSG00000084559	Mir1906-2	mmu-mir-1906-2	microRNA 1906-2	ncRNA	0.010000	0.407960	
mm_113957.1	chr13	51137583	51137783	+	1	NA	NA	NA	3365	NM_011462	20729	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0.005000	0.452736	
mm_41431.1	chr5	90903710	90903910	+	1	NA	NA	NA	-89	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.050000	0.626866	28(GTGCATAAAAGG,-,0.00)
mm_114789.1	chr13	89540570	89540770	+	1	NA	NA	NA	34	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.020000	0.547264	
mm_8013.1	chr1	134866461	134866661	-	1	NA	NA	NA	-62840	NR_015606	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.010000	0.412935	
mm_144756.1	chr18	35740593	35740793	+	1	NA	NA	NA	-139	NM_001289591	72512	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0.010000	0.412935	
mm_9655.1	chr1	177763597	177763797	-	1	NA	NA	NA	32812	NM_007422	11566	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.000000	0.313433	
mm_101422.1	chr11	29547745	29547945	-	1	NA	NA	NA	-105	NM_028504	73324	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	0.125000	0.651741	
mm_124914.1	chr15	11076232	11076432	+	1	NA	NA	NA	11559	NM_175501	239337	Mm.224825	NM_175501	ENSMUSG00000047497	Adamts12	ADAMTS-12|AI605170	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12	protein-coding	0.010000	0.378109	86(CCTCTAATAGCA,+,0.00)
mm_155125.1	chrX	48884852	48885052	+	1	NA	NA	NA	-7239	NM_001085499	209005	Mm.336054	NM_001085499	ENSMUSG00000079606	Gm595	-	predicted gene 595	protein-coding	0.015000	0.447761	
mm_113620.1	chr13	41605817	41606017	+	1	NA	NA	NA	-299	NM_001163572	621976	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.185000	0.810945	
mm_58306.1	chr6	146212737	146212937	-	1	NA	NA	NA	278690	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.010000	0.467662	
mm_103688.1	chr11	79483942	79484142	-	1	NA	NA	NA	-11	NR_045305	104522	Mm.436987	NR_045305	ENSMUSG00000091523	AU040972	AU040954	expressed sequence AU040972	ncRNA	0.025000	0.522388	
mm_155381.1	chrX	71812704	71812904	+	1	NA	NA	NA	-3276	NM_001290781	67048	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding	0.005000	0.552239	
mm_6907.1	chr1	84838599	84838799	-	1	NA	NA	NA	605	NM_133975	14897	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.070000	0.641791	
mm_39458.1	chr5	17576942	17577142	+	1	NA	NA	NA	2226	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.005000	0.278607	76(CTCTTTAAATGC,-,0.00)
mm_128435.1	chr15	50682544	50682744	-	1	NA	NA	NA	206405	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.015000	0.502488	
mm_152783.1	chr19	21440762	21440962	-	1	NA	NA	NA	31799	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.005000	0.457711	-64(CCTTAAATGTCC,+,0.00)
mm_82799.1	chr9	29412424	29412624	-	1	NA	NA	NA	550605	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.145000	0.771144	
mm_51314.1	chr6	72314336	72314536	+	1	NA	NA	NA	9826	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.010000	0.477612	
mm_92935.1	chr10	84533807	84534007	-	1	NA	NA	NA	-19	NM_175451	216197	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.180000	0.805970	
mm_48259.1	chr5	137836122	137836322	-	1	NA	NA	NA	56	NM_153510	231805	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.005000	0.537313	
mm_45642.1	chr5	76951067	76951267	-	1	NA	NA	NA	-244	NM_025939	67054	Mm.182931	NM_025939	ENSMUSG00000029247	Paics	2610511I09Rik|ADE2H1|AIRC|PAIS	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	protein-coding	0.100000	0.656716	
mm_89475.1	chr10	93540510	93540710	+	1	NA	NA	NA	-22	NM_175488	237465	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	0.065000	0.646766	
mm_47621.1	chr5	125245723	125245923	-	1	NA	NA	NA	-66609	NM_001253904	20602	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.055000	0.611940	
mm_126740.1	chr15	85671731	85671931	+	1	NA	NA	NA	-31942	NR_110483	102800312	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0.110000	0.686567	
mm_110272.1	chr12	31996861	31997061	-	1	NA	NA	NA	-46426	NM_153198	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.015000	0.472637	
mm_42061.1	chr5	108762462	108762662	+	1	NA	NA	NA	-1280	NR_040691	73295	Mm.416858	NR_040691	ENSMUSG00000101762	1700047L14Rik	-	RIKEN cDNA 1700047L14 gene	ncRNA	0.010000	0.398010	
mm_71508.1	chr8	46837635	46837835	+	1	NA	NA	NA	97990	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.015000	0.497512	
mm_69587.1	chr7	135705553	135705753	-	1	NA	NA	NA	10726	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.015000	0.447761	
mm_77411.1	chr8	120588986	120589186	-	1	NA	NA	NA	-11	NM_178856	272551	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.100000	0.656716	-63(GTCTCTATAGGG,-,0.00)
mm_63966.1	chr7	139944483	139944683	+	1	NA	NA	NA	727	NM_009482	22286	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	0.090000	0.606965	
mm_63779.1	chr7	131560560	131560760	+	1	NA	NA	NA	166	NM_001317350	12237	Mm.927	NM_009774	ENSMUSG00000066979	Bub3	AU019800|AU021329|AU043350|AW146323|C78067	BUB3 mitotic checkpoint protein	protein-coding	0.090000	0.641791	
mm_65992.1	chr7	30534988	30535188	-	1	NA	NA	NA	-28	NM_001289682	233071	Mm.190704	NM_178252	ENSMUSG00000036882	Arhgap33	AW324378|NOMA-GAP|Snx26|TCGAP	Rho GTPase activating protein 33	protein-coding	0.115000	0.751244	
mm_155929.1	chrX	103447691	103447891	+	1	NA	NA	NA	16274	NR_002844	22097	Mm.472939	NR_002844	ENSMUSG00000085715	Tsix	-	X (inactive)-specific transcript, opposite strand	ncRNA	0.075000	0.587065	
mm_165599.1	chr3	49757220	49757420	-	1	NA	NA	NA	-4	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding	0.060000	0.552239	
mm_24031.1	chr3	87539239	87539439	+	1	NA	NA	NA	13761	NM_012051	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.020000	0.427861	
mm_127190.1	chr15	99030220	99030420	+	1	NA	NA	NA	429	NM_009448	22146	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.080000	0.606965	-32(GGGTATATAAGC,-,0.00)
mm_11056.1	chr2	27487801	27488001	+	1	NA	NA	NA	-12228	NM_001113574	67382	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	0.010000	0.383085	4(TTTTTTATAGCT,+,0.00)
mm_163472.1	chr12	103899158	103899358	-	1	NA	NA	NA	5692	NM_009245	20702	Mm.439692	NM_009245	ENSMUSG00000079015	Serpina1c	Pi3|Pi6|Skalp|Spi1-3|Spi1-6|Wap3	serine (or cysteine) peptidase inhibitor, clade A, member 1C	protein-coding	0.010000	0.557214	
mm_21012.1	chr2	152396473	152396673	-	1	NA	NA	NA	1473	NM_011438	20667	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.035000	0.651741	
mm_144888.1	chr18	36936208	36936408	+	1	NA	NA	NA	-2897	NM_198117	353234	Mm.308500	NM_198117	ENSMUSG00000104148	Pcdha2	-	protocadherin alpha 2	protein-coding	0.000000	0.358209	
mm_30493.1	chr3	156606038	156606238	-	1	NA	NA	NA	44344	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.010000	0.318408	
mm_144388.1	chr18	20668827	20669027	+	1	NA	NA	NA	3677	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.000000	0.373134	
mm_4383.1	chr1	172198516	172198716	+	1	NA	NA	NA	8188	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.010000	0.522388	
mm_35469.1	chr4	40805918	40806118	-	1	NA	NA	NA	44120	NR_039584	100628614		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.015000	0.557214	
mm_12439.1	chr2	70690314	70690514	+	1	NA	NA	NA	28905	NM_027352	70231	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|ENSMUSG00000075299|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.030000	0.621891	
mm_131366.1	chr16	13813849	13814049	+	1	NA	NA	NA	-5302	NM_010946	18203	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0.025000	0.517413	
mm_27089.1	chr3	30014289	30014489	-	1	NA	NA	NA	-1185	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.005000	0.477612	
mm_64365.1	chr7	142434706	142434906	+	1	NA	NA	NA	-171	NM_001285857	55925	Mm.213002	NM_018802	ENSMUSG00000031098	Syt8	-	synaptotagmin VIII	protein-coding	0.015000	0.552239	
mm_160142.1	chr7	34652667	34652867	-	1	NA	NA	NA	74	NM_146188	233107	Mm.486198	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	0.045000	0.587065	
mm_134560.1	chr16	20301716	20301916	-	1	NA	NA	NA	546	NM_001005767	381038	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	0.035000	0.457711	
mm_39174.1	chr4	155760976	155761176	-	1	NA	NA	NA	22	NM_179203	108888	Mm.241152	NM_179203	ENSMUSG00000029036	Atad3a	2400004H09Rik|Atad3|Tob3|mKIAA1273	ATPase family, AAA domain containing 3A	protein-coding	0.135000	0.686567	
mm_136734.1	chr17	8311035	8311235	+	1	NA	NA	NA	-17	NR_073374	75060	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	0.105000	0.661692	
mm_58198.1	chr6	143100041	143100241	-	1	NA	NA	NA	11	NM_001286578	74741	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.085000	0.671642	
mm_164466.1	chr16	59559119	59559319	+	1	NA	NA	NA	-3467	NM_174848	224273	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	0.025000	0.497512	
mm_44811.1	chr5	33524077	33524277	-	1	NA	NA	NA	-90087	NM_011320	672284		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 transcription factor related, locus 1 (Drosophila)	protein-coding	0.005000	0.472637	
mm_114034.1	chr13	52981133	52981333	+	1	NA	NA	NA	-194	NM_017373	18030	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0.155000	0.796020	
mm_116862.1	chr13	54766463	54766663	-	1	NA	NA	NA	-123	NM_033610	104069	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	0.075000	0.721393	
mm_138898.1	chr17	43568475	43568675	+	1	NA	NA	NA	124	NM_013737	27226	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.030000	0.577114	
mm_135913.1	chr16	67594695	67594895	-	1	NA	NA	NA	26113	NM_001347247	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.000000	0.383085	
mm_72432.1	chr8	82863908	82864108	+	1	NA	NA	NA	652	NM_177378	330812	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	0.055000	0.641791	
mm_71920.1	chr8	70152662	70152862	+	1	NA	NA	NA	1	NM_001045484	17259	Mm.432505	NM_008578	ENSMUSG00000079033	Mef2b	AI451606	myocyte enhancer factor 2B	protein-coding	0.050000	0.631841	
mm_9744.1	chr1	180392952	180393152	-	1	NA	NA	NA	-62503	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.005000	0.522388	
mm_133799.1	chr16	95296832	95297032	+	1	NA	NA	NA	39374	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.010000	0.482587	-55(GAATATAAAAAG,-,0.00)
mm_63941.1	chr7	139834095	139834295	+	1	NA	NA	NA	21	NM_177469	52389	Mm.39863	NM_177469	ENSMUSG00000025475	Adgra1	2900059M17Rik|D7Ertd680e|Gpr123	adhesion G protein-coupled receptor A1	protein-coding	0.080000	0.686567	
mm_79542.1	chr9	57910931	57911131	+	1	NA	NA	NA	45	NM_001122873	69459	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0.095000	0.666667	
mm_146089.1	chr18	73572696	73572896	+	1	NA	NA	NA	91	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.130000	0.736318	
mm_55273.1	chr6	53821142	53821342	-	1	NA	NA	NA	-417	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.025000	0.487562	-18(CACTTTAAAAGG,-,0.00),-16(CTTTAAAAGGAC,+,0.00)
mm_159570.1	chr4	115133883	115134083	-	1	NA	NA	NA	-6	NM_001003947	81906	Mm.215544	NM_001003947	ENSMUSG00000047155	Cyp4x1	A230025G20|CYPIVX1|CYP_a|Cyp4a28-ps	cytochrome P450, family 4, subfamily x, polypeptide 1	protein-coding	0.045000	0.626866	
mm_1935.1	chr1	86128102	86128302	+	1	NA	NA	NA	-16232	NM_008311	15559	Mm.439747	NM_008311	ENSMUSG00000026228	Htr2b	5-HT2B|AJ012488|AV377389	5-hydroxytryptamine (serotonin) receptor 2B	protein-coding	0.010000	0.492537	
mm_13893.1	chr2	120404709	120404909	+	1	NA	NA	NA	-693	NM_001110496	211499	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0.025000	0.427861	
mm_144558.1	chr18	31698555	31698755	+	1	NA	NA	NA	-61169	NM_153515	225339	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0.035000	0.582090	
mm_25600.1	chr3	116903636	116903836	+	1	NA	NA	NA	42056	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.010000	0.348259	-41(TGGTTTTAAGGG,-,0.00)
mm_152648.1	chr19	12540690	12540890	-	1	NA	NA	NA	-32720	NM_001346545	107373	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	0.005000	0.472637	
mm_103653.1	chr11	78973008	78973208	-	1	NA	NA	NA	11816	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.015000	0.497512	
mm_97576.1	chr11	78940251	78940451	+	1	NA	NA	NA	15060	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.532338	
mm_131796.1	chr16	22899000	22899200	+	1	NA	NA	NA	-4714	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.015000	0.562189	
mm_26121.1	chr3	137864990	137865190	+	1	NA	NA	NA	603	NM_016750	51788	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0.150000	0.741294	
mm_56631.1	chr6	112947162	112947362	-	1	NA	NA	NA	4	NM_080448	259302	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	0.055000	0.597015	
mm_95096.1	chr11	34022982	34023182	+	1	NA	NA	NA	-24119	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.005000	0.482587	
mm_32258.1	chr4	102572271	102572471	+	1	NA	NA	NA	2311	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.020000	0.477612	
mm_126094.1	chr15	77956702	77956902	+	1	NA	NA	NA	-80	NM_001017983	239554	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	0.095000	0.701493	
mm_130675.1	chr15	100675289	100675489	-	1	NA	NA	NA	-5889	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.025000	0.517413	72(CCTTTAAAATGA,+,0.00)
mm_2523.1	chr1	106541857	106542057	+	1	NA	NA	NA	4674	NR_106164	102466254		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.030000	0.537313	
mm_140859.1	chr17	23740230	23740430	-	1	NA	NA	NA	0	NM_023824	76498	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	0.120000	0.726368	
mm_80247.1	chr9	72748870	72749070	+	1	NA	NA	NA	-58304	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.015000	0.532338	
mm_59113.1	chr7	19822807	19823007	+	1	NA	NA	NA	-152	NM_033601	12051	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.065000	0.666667	
mm_15595.1	chr2	160645882	160646082	+	1	NA	NA	NA	85	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.115000	0.631841	-99(CCTCTAAGAGAC,+,0.00),-35(CCATTTAAAAGC,+,0.00),-35(CCATTTAAAAGC,-,0.00)
mm_98592.1	chr11	95778068	95778268	+	1	NA	NA	NA	29101	NM_201609	268469	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	0.025000	0.512438	
mm_32991.1	chr4	120405173	120405373	+	1	NA	NA	NA	-8	NM_001159630	29871	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	0.185000	0.845771	
mm_132.1	chr1	10039735	10039935	+	1	NA	NA	NA	1617	NM_026493	211660	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	0.125000	0.731343	
mm_96905.1	chr11	70455934	70456134	+	1	NA	NA	NA	-3588	NM_001029929	574428	Mm.472771	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.020000	0.507463	
mm_13282.1	chr2	101624645	101624845	+	1	NA	NA	NA	-3	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.015000	0.532338	
mm_145944.1	chr18	67390421	67390621	+	1	NA	NA	NA	-210	NM_026473	67951	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	0.050000	0.631841	
mm_96337.1	chr11	66167914	66168114	+	1	NA	NA	NA	537	NM_001099633	237806	Mm.264210	NM_001099633	ENSMUSG00000056752	Dnah9	9030022M04|A230091C01|C230051G16|D11Ertd686e|Dnahc9|mKIAA0357	dynein, axonemal, heavy chain 9	protein-coding	0.055000	0.666667	
mm_63639.1	chr7	128540021	128540221	+	1	NA	NA	NA	16538	NM_013863	29810	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0.055000	0.626866	
mm_142140.1	chr17	35969655	35969855	-	1	NA	NA	NA	-5	NM_013854	224742	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	0.135000	0.731343	
mm_28891.1	chr3	97888538	97888738	-	1	NA	NA	NA	69	NM_001289702	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.085000	0.671642	
mm_55561.1	chr6	71341212	71341412	-	1	NA	NA	NA	18500	NM_009858	12526	Mm.333148	NM_009858	ENSMUSG00000053044	Cd8b1	Cd8b|Ly-3|Ly-C|Lyt-3	CD8 antigen, beta chain 1	protein-coding	0.025000	0.587065	
mm_124907.1	chr15	10981693	10981893	+	1	NA	NA	NA	37	NM_008537	17117	Mm.2787	NM_008537	ENSMUSG00000022244	Amacr	Macr1	alpha-methylacyl-CoA racemase	protein-coding	0.105000	0.726368	
mm_27304.1	chr3	49757088	49757288	-	1	NA	NA	NA	128	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding	0.050000	0.582090	
mm_85295.1	chr9	100479929	100480129	-	1	NA	NA	NA	6444	NM_001033543	213208	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.010000	0.383085	
mm_96334.1	chr11	65667663	65667863	+	1	NA	NA	NA	67069	NR_030417	791070		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	0.005000	0.487562	
mm_16267.1	chr2	173659540	173659740	+	1	NA	NA	NA	-101	NR_027957	100043911	Mm.260590	NM_001033179	ENSMUSG00000055897	Ppp4r1l-ps	1700007P14Rik|5830403E09Rik|C030010B13Rik|Ppp4r1l	protein phosphatase 4, regulatory subunit 1-like, pseudogene	pseudo	0.075000	0.701493	
mm_46401.1	chr5	104092905	104093105	-	1	NA	NA	NA	-15397	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.015000	0.487562	
mm_128617.1	chr15	58933227	58933427	-	1	NA	NA	NA	403	NM_175151	69694	Mm.383230	NM_175151	ENSMUSG00000050891	Tatdn1	2310079P03Rik|CDA11	TatD DNase domain containing 1	protein-coding	0.035000	0.542289	
mm_50623.1	chr6	50144593	50144793	+	1	NA	NA	NA	34452	NM_001164733	56524	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.005000	0.462687	
mm_8681.1	chr1	156938696	156938896	-	1	NA	NA	NA	591	NM_001159966	78255	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0.045000	0.587065	
mm_8962.1	chr1	165160579	165160779	-	1	NA	NA	NA	94	NM_032005	83993	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	0.015000	0.522388	
mm_60425.1	chr7	44476512	44476712	+	1	NA	NA	NA	6265	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.393035	
mm_145883.1	chr18	65481958	65482158	+	1	NA	NA	NA	51061	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.323383	
mm_110752.1	chr12	69987007	69987207	-	1	NA	NA	NA	-105	NM_022028	64010	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0.180000	0.791045	
mm_150142.1	chr19	31113835	31114035	+	1	NA	NA	NA	31094	NM_031249	83410	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	0.030000	0.517413	
mm_73702.1	chr8	111686553	111686753	+	1	NA	NA	NA	3021	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.025000	0.601990	
mm_64348.1	chr7	142380845	142381045	+	1	NA	NA	NA	6925	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.005000	0.472637	
mm_9373.1	chr1	172207604	172207804	-	1	NA	NA	NA	-900	NM_011063	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.000000	0.552239	
mm_1914.1	chr1	86017976	86018176	+	1	NA	NA	NA	-3866	NM_001122732	70060	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0.015000	0.572139	
mm_88596.1	chr10	79780878	79781078	+	1	NA	NA	NA	3704	NM_031380	83554	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0.035000	0.587065	
mm_146711.1	chr18	14683195	14683395	-	1	NA	NA	NA	-381	NM_001161370	268996	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	0.075000	0.577114	25(CCATTTAAACTA,+,0.00)
mm_155285.1	chrX	61183202	61183402	+	1	NA	NA	NA	2256	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.005000	0.437811	
mm_35402.1	chr4	34687317	34687517	-	1	NA	NA	NA	21	NM_011895	24060	Mm.281885	NM_011895	ENSMUSG00000028293	Slc35a1	AA408150|AI314851	solute carrier family 35 (CMP-sialic acid transporter), member 1	protein-coding	0.130000	0.711443	
mm_39998.1	chr5	32613392	32613592	+	1	NA	NA	NA	2321	NM_009535	22612	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	0.000000	0.318408	
mm_165864.1	chr4	33260466	33260666	+	1	NA	NA	NA	-11779	NM_001033225	108767	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.000000	0.542289	
mm_29187.1	chr3	106547471	106547671	-	1	NA	NA	NA	-227	NM_001286986	67171	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0.115000	0.731343	
mm_103950.1	chr11	84068281	84068481	-	1	NA	NA	NA	-24	NM_019819	56405	Mm.240885	NM_019819	ENSMUSG00000018648	Dusp14	1110014C10Rik|2310042C07Rik|D11Ertd395e|MKP-L|Mkp6	dual specificity phosphatase 14	protein-coding	0.175000	0.800995	
mm_169373.1	chr14	34620324	34620524	-	1	NA	NA	NA	-20282	NM_013887	30044	Mm.272060	NM_013887	ENSMUSG00000021799	Opn4	1110007J02Rik|Gm533	opsin 4 (melanopsin)	protein-coding	0.005000	0.482587	
mm_50084.1	chr6	41523666	41523866	+	1	NA	NA	NA	1990	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.457711	
mm_45908.1	chr5	89416241	89416441	-	1	NA	NA	NA	41557	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.005000	0.313433	
mm_127413.1	chr15	101257144	101257344	+	1	NA	NA	NA	-9602	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.010000	0.552239	
mm_4533.1	chr1	175766933	175767133	+	1	NA	NA	NA	68440	NM_029453	75820	Mm.50361	NM_029453	ENSMUSG00000026523	Wdr64	4930415O10Rik|4930511H01Rik	WD repeat domain 64	protein-coding	0.025000	0.472637	
mm_36752.1	chr4	101253508	101253708	-	1	NA	NA	NA	11674	NM_146145	16451	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.000000	0.407960	
mm_136333.1	chr16	92434422	92434622	-	1	NA	NA	NA	31647	NM_001081549	54720	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.020000	0.467662	
mm_37690.1	chr4	129239080	129239280	-	1	NA	NA	NA	38	NM_001285865	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.100000	0.766169	
mm_62138.1	chr7	97090668	97090868	+	1	NA	NA	NA	9017	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.000000	0.273632	
mm_27605.1	chr3	59153532	59153732	-	1	NA	NA	NA	-4	NR_045641	320463	Mm.484506	NR_045641	ENSMUSG00000036381	F630111L10Rik	-	RIKEN cDNA F630111L10 gene	ncRNA	0.015000	0.522388	
mm_172045.1	chr6	128466366	128466566	+	1	NA	NA	NA	27709	NR_028592	791299	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	ENSMUSG00000059659	predicted gene 10069	ncRNA	0.010000	0.567164	
mm_157625.1	chrX	56597773	56597973	-	1	NA	NA	NA	46	NM_146234	236792	Mm.291824	NM_146234	ENSMUSG00000061273	Mmgt1	9630048L06Rik|BC032271|Emc5|Mir5116|Tmem32|mir-5116	membrane magnesium transporter 1	protein-coding	0.085000	0.616915	
mm_834.1	chr1	51478538	51478738	+	1	NA	NA	NA	-239	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.060000	0.597015	
mm_74605.1	chr8	11948216	11948416	-	1	NA	NA	NA	107795	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	0.035000	0.532338	
mm_81222.1	chr9	107614335	107614535	+	1	NA	NA	NA	-5194	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.030000	0.606965	
mm_48714.1	chr5	147307123	147307323	-	1	NA	NA	NA	26	NM_007673	12591	Mm.20358	NM_007673	ENSMUSG00000029646	Cdx2	Cdx-2	caudal type homeobox 2	protein-coding	0.050000	0.587065	
mm_22600.1	chr3	14481185	14481385	+	1	NA	NA	NA	586	NM_080852	140918	Mm.215250	NM_080852	ENSMUSG00000039710	Slc7a12	Asc-2|XAT1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 12	protein-coding	0.005000	0.417910	
mm_9877.1	chr1	185441625	185441825	-	1	NA	NA	NA	94	NR_038006	319562	Mm.184335	NM_176943	ENSMUSG00000051295	9630028B13Rik	-	RIKEN cDNA 9630028B13 gene	ncRNA	0.020000	0.517413	
mm_142965.1	chr17	56121809	56122009	-	1	NA	NA	NA	37	NM_029796	76905	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0.005000	0.547264	-31(GACTATATAAAG,-,0.00),-29(CTATATAAAGCC,+,0.00)
mm_44045.1	chr5	147860360	147860560	+	1	NA	NA	NA	-168	NM_025624	66537	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.080000	0.656716	
mm_122498.1	chr14	46788198	46788398	-	1	NA	NA	NA	59	NM_009919	12793	Mm.3261	NM_009919	ENSMUSG00000015759	Cnih1	0610007J15|CNIH-1|Cnih	cornichon family AMPA receptor auxiliary protein 1	protein-coding	0.120000	0.706468	
mm_67605.1	chr7	83745984	83746184	-	1	NA	NA	NA	-10594	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.040000	0.567164	
mm_104243.1	chr11	88827193	88827393	-	1	NA	NA	NA	24210	NM_009648	11640	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	0.015000	0.527363	
mm_158319.1	chrX	133688892	133689092	-	1	NA	NA	NA	1	NM_001105245	279653	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding	0.090000	0.696517	
mm_154895.1	chrX	20870155	20870355	+	1	NA	NA	NA	89	NM_001294280	21857	Mm.8245	NM_011593	ENSMUSG00000001131	Timp1	Clgi|EPA|TIMP-1|TPA-S1|Timp	tissue inhibitor of metalloproteinase 1	protein-coding	0.050000	0.611940	
mm_12643.1	chr2	74716892	74717092	+	1	NA	NA	NA	-862	NR_027899	73429	Mm.443313	NR_027899		Hoxd3os1	1700064D17Rik|1700109F18Rik	homeobox D3, opposite strand 1	ncRNA	0.010000	0.383085	
mm_133633.1	chr16	91654548	91654748	+	1	NA	NA	NA	6824	NM_178880	20658	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	0.005000	0.343284	
mm_107675.1	chr12	54239142	54239342	+	1	NA	NA	NA	5627	NR_108033	73592	Mm.416874	NR_108033		1700104L18Rik	-	RIKEN cDNA 1700104L18 gene	ncRNA	0.020000	0.452736	
mm_108877.1	chr12	99687067	99687267	+	1	NA	NA	NA	-59193	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.010000	0.552239	
mm_737.1	chr1	43447251	43447451	+	1	NA	NA	NA	1600	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.020000	0.447761	
mm_11001.1	chr2	26445927	26446127	+	1	NA	NA	NA	-811	NM_153125	227648	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	0.045000	0.597015	
mm_147070.1	chr18	35214921	35215121	-	1	NA	NA	NA	3	NM_178005	107065	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0.035000	0.472637	-40(GCCTATATACAG,+,0.00)
mm_170812.1	chr2	176153371	176153571	-	1	NA	NA	NA	-73094	NM_001305137	100504263	Mm.379980	NM_001305136	ENSMUSG00000078894	2210418O10Rik	Gm6182	predicted gene 2210418O10Rik	protein-coding	0.015000	0.507463	
mm_92745.1	chr10	80998055	80998255	-	1	NA	NA	NA	3210	NM_001038655	14708	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.040000	0.567164	
mm_125999.1	chr15	76477333	76477533	+	1	NA	NA	NA	71	NR_138589	15499	Mm.347444	NM_008296	ENSMUSG00000022556	Hsf1	AA960185|HSTF|HSTF 1|Hsf1alpha|Hsf1beta	heat shock factor 1	protein-coding	0.115000	0.716418	
mm_95056.1	chr11	32400287	32400487	+	1	NA	NA	NA	52576	NM_177364	268396	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.010000	0.363184	
mm_82426.1	chr9	14903867	14904067	-	1	NA	NA	NA	-16	NM_022888	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.010000	0.502488	
mm_101803.1	chr11	46291457	46291657	-	1	NA	NA	NA	20801	NM_001252460	76884	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0.035000	0.567164	
mm_234.1	chr1	19104081	19104281	+	1	NA	NA	NA	1159	NM_153154	226896	Mm.244858	NM_153154	ENSMUSG00000042596	Tfap2d	Tcfap2d	transcription factor AP-2, delta	protein-coding	0.050000	0.621891	-80(ACCTATATAGGG,-,0.00)
mm_97832.1	chr11	83064394	83064594	+	1	NA	NA	NA	-618	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.000000	0.482587	
mm_54088.1	chr6	15845933	15846133	-	1	NA	NA	NA	125372	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.005000	0.472637	82(GACCATAAAAAG,-,0.00)
mm_150890.1	chr19	45363995	45364195	+	1	NA	NA	NA	361	NM_001037758	12234	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.050000	0.706468	
mm_92305.1	chr10	75131640	75131840	-	1	NA	NA	NA	70844	NM_001081412	110279	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.025000	0.587065	
mm_40699.1	chr5	65858080	65858280	+	1	NA	NA	NA	-5389	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.030000	0.527363	
mm_145897.1	chr18	65623952	65624152	+	1	NA	NA	NA	-4437	NR_105742	100526497		NR_105742	ENSMUSG00000077113	Mir466p	mmu-mir-466p	microRNA 466p	ncRNA	0.025000	0.572139	
mm_111034.1	chr12	79190866	79191066	-	1	NA	NA	NA	853	NM_021557	17252	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c	retinol dehydrogenase 11	protein-coding	0.020000	0.502488	
mm_165522.1	chr2	174284181	174284381	+	1	NA	NA	NA	-39	NM_019690	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.055000	0.611940	5(AACTTTATAGGG,-,0.00),7(CTTTATAGGGCC,+,0.00)
mm_125242.1	chr15	34434091	34434291	+	1	NA	NA	NA	9034	NM_009083	19946	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	0.000000	0.368159	
mm_145864.1	chr18	65460923	65461123	+	1	NA	NA	NA	30026	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.402985	-47(GCCTTTAAACCT,+,0.00),-14(GTATATAAAAGG,-,0.00)
mm_106067.1	chr11	116138719	116138919	-	1	NA	NA	NA	49	NM_024177	60441	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	0.120000	0.741294	
mm_76177.1	chr8	82398561	82398761	-	1	NA	NA	NA	3925	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.010000	0.452736	
mm_143780.1	chr17	81730789	81730989	-	1	NA	NA	NA	7498	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.010000	0.432836	
mm_162350.1	chr1	54583776	54583976	+	1	NA	NA	NA	-26192	NM_001163314	241062	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.000000	0.557214	-35(CACTATAAAAGG,-,0.00)
mm_58731.1	chr7	13029762	13029962	+	1	NA	NA	NA	4915	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.020000	0.572139	
mm_49537.1	chr6	30175268	30175468	+	1	NA	NA	NA	-1243	NR_126541	101447999		NR_126540		Mirc35hg	-	microRNA cluster 35, host gene	ncRNA	0.035000	0.582090	
mm_47432.1	chr5	123176094	123176294	-	1	NA	NA	NA	6492	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.050000	0.592040	
mm_146311.1	chr18	80279341	80279541	+	1	NA	NA	NA	23135	NM_001164423	66943	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.010000	0.422886	
mm_48634.1	chr5	145140169	145140369	-	1	NA	NA	NA	-107	NM_001310771	231889	Mm.277413	NM_001008705	ENSMUSG00000038722	Bud31	C77604|EDG-2|EDG2|G10	BUD31 homolog	protein-coding	0.085000	0.611940	
mm_107499.1	chr12	38860922	38861122	+	1	NA	NA	NA	77311	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.015000	0.383085	
mm_72705.1	chr8	84980092	84980292	+	1	NA	NA	NA	-1444	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.050000	0.646766	
mm_57666.1	chr6	128487873	128488073	-	1	NA	NA	NA	38747	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.025000	0.502488	
mm_71410.1	chr8	46471794	46471994	+	1	NA	NA	NA	857	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.020000	0.402985	-3(GGACTTAAAAGA,-,0.00)
mm_64315.1	chr7	141864880	141865080	+	1	NA	NA	NA	25908	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.025000	0.517413	
mm_110646.1	chr12	58976256	58976456	-	1	NA	NA	NA	35661	NM_009147	20334	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	0.020000	0.333333	
mm_126714.1	chr15	85336158	85336358	+	1	NA	NA	NA	-123	NM_016843	54138	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.085000	0.711443	
mm_26748.1	chr3	7613549	7613749	-	1	NA	NA	NA	111	NM_008371	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.020000	0.477612	
mm_19862.1	chr2	113848507	113848707	-	1	NA	NA	NA	54	NM_181416	228482	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	0.085000	0.691542	
mm_9286.1	chr1	171634652	171634852	-	1	NA	NA	NA	7148	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.462687	
mm_149056.1	chr19	8839264	8839464	+	1	NA	NA	NA	36	NM_008144	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.000000	0.572139	
mm_15893.1	chr2	164940654	164940854	+	1	NA	NA	NA	-7465	NM_013599	17395	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.025000	0.457711	
mm_138789.1	chr17	37271039	37271239	+	1	NA	NA	NA	905	NM_013819	14991	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	0.020000	0.547264	
mm_164106.1	chr15	25940705	25940905	+	1	NA	NA	NA	-21	NM_001277316	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.020000	0.527363	
mm_131528.1	chr16	17646386	17646586	+	1	NA	NA	NA	16	NM_001166164	72315	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.145000	0.781095	
mm_65675.1	chr7	28311944	28312144	-	1	NA	NA	NA	2	NM_025616	66525	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	0.135000	0.726368	
mm_22473.1	chr3	5218475	5218675	+	1	NA	NA	NA	21	NM_030708	80892	Mm.41522	NM_030708	ENSMUSG00000025255	Zfhx4	A930021B15|C130041O22Rik|Zfh-4|Zfh4	zinc finger homeodomain 4	protein-coding	0.025000	0.442786	
mm_18323.1	chr2	57114873	57115073	-	1	NA	NA	NA	65	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.125000	0.686567	
mm_13346.1	chr2	102944155	102944355	+	1	NA	NA	NA	-42590	NM_001039150	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.010000	0.467662	
mm_167846.1	chrX	6346192	6346392	+	1	NA	NA	NA	-25568	NM_009757	12155	Mm.42160	NM_009757	ENSMUSG00000023279	Bmp15	AU015375|AU018861|AU021453|Bmp-15|C86824|C87336|GDF-9B	bone morphogenetic protein 15	protein-coding	0.000000	0.487562	
mm_64943.1	chr7	16313942	16314142	-	1	NA	NA	NA	4459	NM_133234	170770	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.130000	0.711443	-49(GGCTATAAATAG,-,0.00),-47(CTATAAATAGCC,+,0.00)
mm_171918.1	chr5	5782444	5782644	-	1	NA	NA	NA	-33227	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.015000	0.482587	
mm_121491.1	chr14	121253048	121253248	+	1	NA	NA	NA	126082	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.010000	0.522388	5(CCTTTTCTATCC,+,0.00),71(TCTTTTAAACCT,+,0.00)
mm_103576.1	chr11	78080274	78080474	-	1	NA	NA	NA	9	NM_022313	57837	Mm.21096	NM_022313	ENSMUSG00000020832	Eral1	2610524P08Rik|9130407C09Rik|AU019798|Era|M-ERA|MERA-S|MERA-W	Era (G-protein)-like 1 (E. coli)	protein-coding	0.080000	0.601990	
mm_132422.1	chr16	35450942	35451142	+	1	NA	NA	NA	39831	NM_028295	72599	Mm.71015	NM_028295	ENSMUSG00000022844	Pdia5	2700053F16Rik|AU015525|Pdir	protein disulfide isomerase associated 5	protein-coding	0.020000	0.507463	
mm_87438.1	chr10	51480146	51480346	+	1	NA	NA	NA	-366	NM_008147	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.000000	0.432836	
mm_84334.1	chr9	64022020	64022220	-	1	NA	NA	NA	-61	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.090000	0.641791	-9(CCTTTAAGAGTT,+,0.00)
mm_110133.1	chr12	26445096	26445296	-	1	NA	NA	NA	11256	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.010000	0.388060	
mm_162362.1	chr1	64532596	64532796	-	1	NA	NA	NA	-108	NM_133828	12912	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.115000	0.696517	
mm_56357.1	chr6	93792374	93792574	-	1	NA	NA	NA	120489	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.025000	0.522388	
mm_112997.1	chr13	21753957	21754157	+	1	NA	NA	NA	-66	NM_178201	319187		NM_178201	ENSMUSG00000095217	Hist1h2bn	-	histone cluster 1, H2bn	protein-coding	0.035000	0.452736	-14(TTGTTTAAAAGG,-,0.00)
mm_53202.1	chr6	125590764	125590964	+	1	NA	NA	NA	37916	NM_011708	22371	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.030000	0.512438	
mm_68364.1	chr7	106644546	106644746	-	1	NA	NA	NA	-1	NM_001277182	434223	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	0.005000	0.477612	
mm_126018.1	chr15	76667595	76667795	+	1	NA	NA	NA	2253	NM_007989	14106	Mm.42011	NM_007989	ENSMUSG00000033837	Foxh1	Fast1|Fast2|fast-1|fast-2	forkhead box H1	protein-coding	0.010000	0.567164	
mm_157851.1	chrX	74425206	74425406	-	1	NA	NA	NA	694	NM_001136067	16151	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	0.020000	0.482587	
mm_155289.1	chrX	61183458	61183658	+	1	NA	NA	NA	2000	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.005000	0.373134	
mm_112302.1	chr12	114740791	114740991	-	1	NA	NA	NA	-227197	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.393035	
mm_80265.1	chr9	72925402	72925602	+	1	NA	NA	NA	-148	NM_028116	72135	Mm.273605	NM_028116	ENSMUSG00000034910	Pygo1	2600014C22Rik	pygopus 1	protein-coding	0.150000	0.825871	
mm_154393.1	chrM	13036	13236	+	1	NA	NA	NA	NA	NA									0.025000	0.402985	-48(CCTCATAAACCC,+,0.00)
mm_160076.1	chr7	7209806	7210006	-	1	NA	NA	NA	92	NM_145577	232855	Mm.360403	NM_145577	ENSMUSG00000066838	Zfp772	-	zinc finger protein 772	protein-coding	0.055000	0.497512	
mm_88753.1	chr10	80300924	80301124	+	1	NA	NA	NA	-796	NM_011789	23805	Mm.57247	NM_011789	ENSMUSG00000020135	Apc2	AI852447|APCL|R75424	adenomatosis polyposis coli 2	protein-coding	0.035000	0.597015	
mm_31075.1	chr4	41379450	41379650	+	1	NA	NA	NA	30554	NM_023305	67123	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.010000	0.447761	
mm_102012.1	chr11	51606749	51606949	-	1	NA	NA	NA	32	NM_001048061	15384	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.105000	0.597015	
mm_48762.1	chr5	148379470	148379670	-	1	NA	NA	NA	13245	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.035000	0.587065	
mm_59041.1	chr7	19345006	19345206	+	1	NA	NA	NA	35	NM_007948	13870	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.070000	0.601990	
mm_9847.1	chr1	184732073	184732273	-	1	NA	NA	NA	320	NM_008250	15284	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.075000	0.676617	
mm_58001.1	chr6	136173440	136173640	-	1	NA	NA	NA	-29	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.020000	0.597015	
mm_41979.1	chr5	107497682	107497882	+	1	NA	NA	NA	3	NM_001168557	231570	Mm.261891	NM_001007574	ENSMUSG00000044060	A830010M20Rik	AI849226|Kiaa1107|mKIAA1107	RIKEN cDNA A830010M20 gene	protein-coding	0.020000	0.472637	
mm_4655.1	chr1	180345894	180346094	+	1	NA	NA	NA	-15445	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.010000	0.432836	
mm_23919.1	chr3	83055441	83055641	+	1	NA	NA	NA	3	NM_016784	53317	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	0.120000	0.636816	
mm_45987.1	chr5	90492661	90492861	-	1	NA	NA	NA	2047	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.020000	0.432836	
mm_51279.1	chr6	72153581	72153781	+	1	NA	NA	NA	-30484	NR_045165	71265	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.040000	0.582090	
mm_15956.1	chr2	165992583	165992783	+	1	NA	NA	NA	46	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.140000	0.721393	
mm_31285.1	chr4	45848929	45849129	+	1	NA	NA	NA	82	NM_028788	74152	Mm.63645	NM_028788	ENSMUSG00000028327	Stra6l	1300002K09Rik|Rbpr2	STRA6-like	protein-coding	0.040000	0.552239	
mm_39382.1	chr5	13125425	13125625	+	1	NA	NA	NA	-271259	NM_001243072	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.030000	0.527363	-52(CCTCTTAAACCA,+,0.00),-28(GCTCTAATAGAG,+,0.00)
mm_90496.1	chr10	128035234	128035434	+	1	NA	NA	NA	-12	NM_013608	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.075000	0.527363	
mm_95700.1	chr11	54400925	54401125	+	1	NA	NA	NA	30373	NM_029105	74847	Mm.486538	NM_029105	ENSMUSG00000020332	Meikin	4930404A10Rik	meiotic kinetochore factor	protein-coding	0.085000	0.587065	
mm_140656.1	chr17	12763915	12764115	-	1	NA	NA	NA	5691	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.005000	0.323383	
mm_91951.1	chr10	61098937	61099137	-	1	NA	NA	NA	9706	NM_025273	13180	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.010000	0.462687	-70(TCCTTTATAGTC,+,0.00)
mm_10673.1	chr2	21306795	21306995	+	1	NA	NA	NA	-60672	NM_001004761	241263	Mm.166647	NM_175706	ENSMUSG00000045967	Gpr158	5330427M13Rik|mKIAA1136	G protein-coupled receptor 158	protein-coding	0.000000	0.402985	-7(TCTTAAATACAC,+,0.00)
mm_148048.1	chr18	71255119	71255319	-	1	NA	NA	NA	686927	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.000000	0.318408	
mm_140995.1	chr17	24885783	24885983	-	1	NA	NA	NA	467	NM_011956	26426	Mm.36718	NM_011956	ENSMUSG00000039183	Nubp2	D17Wsu11e	nucleotide binding protein 2	protein-coding	0.045000	0.562189	
mm_89214.1	chr10	86731655	86731855	+	1	NA	NA	NA	18990	NM_153595	103220	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	0.010000	0.318408	
mm_110426.1	chr12	46818893	46819093	-	1	NA	NA	NA	-218	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.080000	0.691542	
mm_104790.1	chr11	98707667	98707867	-	1	NA	NA	NA	6454	NM_009971	12985	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.040000	0.567164	
mm_154619.1	chrX	7722136	7722336	+	1	NA	NA	NA	16	NM_001290792	54636	Mm.305725	NM_172372	ENSMUSG00000039382	Wdr45	C79260|DXImx38e|JM5|Sfc19|WIPI-4|Wdrx1	WD repeat domain 45	protein-coding	0.040000	0.601990	
mm_61197.1	chr7	63936590	63936790	+	1	NA	NA	NA	2225	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.035000	0.577114	84(GCCTCTATAGAG,-,0.00)
mm_6982.1	chr1	86356545	86356745	-	1	NA	NA	NA	-318	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.010000	0.452736	
mm_89282.1	chr10	87864787	87864987	+	1	NA	NA	NA	3776	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.020000	0.537313	
mm_57328.1	chr6	124738764	124738964	-	1	NA	NA	NA	-155	NM_001077705	15170	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.015000	0.597015	
mm_33534.1	chr4	130932327	130932527	+	1	NA	NA	NA	-11958	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.000000	0.422886	89(CCATTTATACAT,+,0.00)
mm_60335.1	chr7	44335581	44335781	+	1	NA	NA	NA	25417	NM_001034115	243961	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3/ankyrin domain gene 1	protein-coding	0.070000	0.716418	
mm_95933.1	chr11	58380490	58380690	+	1	NA	NA	NA	-56	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.035000	0.467662	
mm_96184.1	chr11	61668931	61669131	+	1	NA	NA	NA	-15379	NM_178618	69640	Mm.458559	NM_178618	ENSMUSG00000042377	Fam83g	2310040C09Rik|AI506990|wly	family with sequence similarity 83, member G	protein-coding	0.015000	0.542289	
mm_137349.1	chr17	25184514	25184714	+	1	NA	NA	NA	53	NM_183150	214489	Mm.274433	NM_183150	ENSMUSG00000067722	BC003965	Ccsmst1	cDNA sequence BC003965	protein-coding	0.105000	0.621891	
mm_134219.1	chr16	11254052	11254252	-	1	NA	NA	NA	173	NM_001130008	14852	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	0.085000	0.666667	
mm_129993.1	chr15	86169736	86169936	-	1	NA	NA	NA	16305	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.015000	0.472637	-35(TTTTATTAAAGG,-,0.00)
mm_58756.1	chr7	13398059	13398259	+	1	NA	NA	NA	4	NM_013877	29865	Mm.103669	NM_013877	ENSMUSG00000005649	Cabp5	-	calcium binding protein 5	protein-coding	0.000000	0.497512	-73(AGCCATAAATGG,-,0.00)
mm_71770.1	chr8	66443223	66443423	+	1	NA	NA	NA	43184	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.010000	0.378109	
mm_152733.1	chr19	18936502	18936702	-	1	NA	NA	NA	64515	NM_146095	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.005000	0.288557	
mm_33239.1	chr4	127023350	127023550	+	1	NA	NA	NA	2149	NM_023603	71514	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|OTTMUSG00000009329|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.025000	0.462687	
mm_112047.1	chr12	111712792	111712992	-	1	NA	NA	NA	61	NM_001324481	70369	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.160000	0.815920	
mm_145681.1	chr18	61589122	61589322	+	1	NA	NA	NA	33640	NM_146087	93687	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0.005000	0.373134	
mm_106642.1	chr11	121038209	121038409	-	1	NA	NA	NA	1169	NM_009854	12516	Mm.4100	NM_009854	ENSMUSG00000025163	Cd7	-	CD7 antigen	protein-coding	0.030000	0.522388	
mm_32334.1	chr4	104367541	104367741	+	1	NA	NA	NA	103	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding	0.125000	0.761194	
mm_151032.1	chr19	47015154	47015354	+	1	NA	NA	NA	-65	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.185000	0.781095	
mm_138241.1	chr17	34564210	34564410	+	1	NA	NA	NA	15	NM_010929	18132	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	0.015000	0.606965	
mm_114065.1	chr13	54380195	54380395	+	1	NA	NA	NA	8946	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.000000	0.532338	
mm_161532.1	chr15	102366820	102367020	-	1	NA	NA	NA	-649	NM_130458	170574	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	0.045000	0.611940	
mm_104984.1	chr11	100264981	100265181	-	1	NA	NA	NA	-4052	NM_010663	16667	Mm.14046	NM_010663	ENSMUSG00000035557	Krt17	K17|Krt1-17	keratin 17	protein-coding	0.025000	0.587065	
mm_85759.1	chr9	108649505	108649705	-	1	NA	NA	NA	-225	NM_011790	23807	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.055000	0.472637	
mm_123591.1	chr14	67336079	67336279	-	1	NA	NA	NA	-21468	NM_001037931	628416	Mm.390723	NM_001037931		Gm6878	EG628416	predicted gene 6878	protein-coding	0.005000	0.492537	-42(TGCTCTAAAAGG,-,0.00)
mm_90073.1	chr10	116377532	116377732	+	1	NA	NA	NA	-40489	NR_028107	67342	Mm.245800	NM_026098	ENSMUSG00000020164	Kcnmb4os1	1700058G18Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1	ncRNA	0.020000	0.427861	
mm_50620.1	chr6	50110810	50111010	+	1	NA	NA	NA	669	NM_001164733	56524	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.075000	0.597015	
mm_134628.1	chr16	21650107	21650307	-	1	NA	NA	NA	44458	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.000000	0.308458	
mm_117287.1	chr13	66244007	66244207	-	1	NA	NA	NA	130654	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.010000	0.522388	
mm_86459.1	chr10	4355353	4355553	+	1	NA	NA	NA	32655	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.055000	0.582090	
mm_61786.1	chr7	83799357	83799557	+	1	NA	NA	NA	-4618	NM_029335	75556	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	0.010000	0.512438	
mm_93400.1	chr10	107719832	107720032	-	1	NA	NA	NA	95	NM_001081432	237523	Mm.391418	NM_001081432	ENSMUSG00000035916	Ptprq	-	protein tyrosine phosphatase, receptor type, Q	protein-coding	0.005000	0.348259	
mm_14593.1	chr2	136058044	136058244	+	1	NA	NA	NA	217	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.055000	0.597015	
mm_69946.1	chr7	142241038	142241238	-	1	NA	NA	NA	-11167	NM_001037822	114666	Mm.444495	NM_001037822	ENSMUSG00000073785	Krtap5-5	A030001H12Rik|AI586182|BB149782	keratin associated protein 5-5	protein-coding	0.010000	0.512438	-33(GGGTATAAAGGC,-,0.00)
mm_8591.1	chr1	156005781	156005981	-	1	NA	NA	NA	28936	NM_001160019	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.015000	0.422886	
mm_34176.1	chr4	140699774	140699974	+	1	NA	NA	NA	-1599	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.060000	0.567164	-33(ACCTTTTAAAGG,-,0.00),-32(CCTTTTAAAGGC,+,0.00),-31(CTTTTAAAGGCA,+,0.00)
mm_25392.1	chr3	107218585	107218785	+	1	NA	NA	NA	3047	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.030000	0.527363	
mm_82947.1	chr9	35558324	35558524	-	1	NA	NA	NA	46	NM_013932	30959	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	0.145000	0.736318	
mm_171283.1	chr3	89715614	89715814	+	1	NA	NA	NA	692	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.045000	0.552239	
mm_71374.1	chr8	45791412	45791612	+	1	NA	NA	NA	27785	NR_045739	319940	Mm.441720	NR_045739	ENSMUSG00000085440	Sorbs2os	D330022K07Rik	sorbin and SH3 domain containing 2, opposite strand	ncRNA	0.000000	0.373134	-99(GTTTTTAAAGGA,+,0.00),-16(GCATTTAGAGAA,+,0.00)
mm_38406.1	chr4	139085484	139085684	-	1	NA	NA	NA	7386	NM_008675	17965	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	0.030000	0.597015	
mm_10000.1	chr1	191465233	191465433	-	1	NA	NA	NA	-68292	NM_144880	226849	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0.005000	0.467662	
mm_48905.1	chr6	3526574	3526774	+	1	NA	NA	NA	28281	NM_001167750	73288	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	0.005000	0.333333	
mm_138069.1	chr17	33940622	33940822	+	1	NA	NA	NA	-1	NM_020603	57315	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	0.060000	0.587065	
mm_109139.1	chr12	106459046	106459246	+	1	NA	NA	NA	-11480	NR_036593	76639	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA	0.020000	0.467662	
mm_68006.1	chr7	100938759	100938959	-	1	NA	NA	NA	-6698	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.035000	0.567164	
mm_32066.1	chr4	97777777	97777977	+	1	NA	NA	NA	251	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.065000	0.606965	
mm_22711.1	chr3	19188004	19188204	+	1	NA	NA	NA	-117	NM_026182	67472	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.105000	0.726368	
mm_22560.1	chr3	9886883	9887083	+	1	NA	NA	NA	-53304	NM_001195031	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.025000	0.562189	-35(CATTCTATAAGG,-,0.00)
mm_49686.1	chr6	33374537	33374737	+	1	NA	NA	NA	125487	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.000000	0.278607	
mm_163401.1	chr12	73201932	73202132	+	1	NA	NA	NA	78315	NM_008612	17420	Mm.246750	NM_008612	ENSMUSG00000021103	Mnat1	E130115E11Rik|MAT1|P36	menage a trois 1	protein-coding	0.000000	0.358209	
mm_65059.1	chr7	18798410	18798610	-	1	NA	NA	NA	0	NM_011964	26439	Mm.36878	NM_011964	ENSMUSG00000004542	Psg19	CGM7|Cea-4|Cea4	pregnancy specific glycoprotein 19	protein-coding	0.005000	0.487562	
mm_164528.1	chr17	6006382	6006582	+	1	NA	NA	NA	-1098	NM_001290698	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.015000	0.512438	
mm_135248.1	chr16	37539644	37539844	-	1	NA	NA	NA	25	NM_028812	74197	Mm.287795	NM_028812	ENSMUSG00000022828	Gtf2e1	2610024P03Rik|56kDa|AI303800|FE|TFIIE-A	general transcription factor II E, polypeptide 1 (alpha subunit)	protein-coding	0.080000	0.582090	
mm_42090.1	chr5	110261377	110261577	+	1	NA	NA	NA	8422	NM_028273	72542	Mm.61682	NM_028273	ENSMUSG00000029500	Pgam5	2610528A17Rik	phosphoglycerate mutase family member 5	protein-coding	0.020000	0.447761	
mm_1283.1	chr1	64053614	64053814	+	1	NA	NA	NA	-11213	NR_105864	102466760		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.020000	0.487562	
mm_16889.1	chr2	13011667	13011867	-	1	NA	NA	NA	-903	NM_153155	227580	Mm.229322	NM_153155	ENSMUSG00000049630	C1ql3	1110065A22Rik|AI661623|C1ql|C1qtnf13|CTRP13|K100	C1q-like 3	protein-coding	0.030000	0.527363	
mm_149366.1	chr19	11355997	11356197	+	1	NA	NA	NA	-19391	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.010000	0.427861	
mm_27229.1	chr3	36450583	36450783	-	1	NA	NA	NA	24841	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.010000	0.417910	
mm_95173.1	chr11	40734081	40734281	+	1	NA	NA	NA	520	NM_001290697	52653	Mm.276504	NM_026023	ENSMUSG00000020328	Nudcd2	-	NudC domain containing 2	protein-coding	0.060000	0.611940	
mm_143683.1	chr17	80062123	80062323	-	1	NA	NA	NA	45	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.085000	0.701493	
mm_148547.1	chr19	4711260	4711460	+	1	NA	NA	NA	137	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	0.035000	0.512438	
mm_53445.1	chr6	134414347	134414547	+	1	NA	NA	NA	18118	NM_025778	66813	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.020000	0.517413	-94(GCTTTTCGAGTC,+,0.00)
mm_124639.1	chr15	4375541	4375741	+	1	NA	NA	NA	150	NM_177355	239318	Mm.308996	NM_177355	ENSMUSG00000049148	Plcxd3	B130016O10Rik	phosphatidylinositol-specific phospholipase C, X domain containing 3	protein-coding	0.060000	0.557214	
mm_29060.1	chr3	103778167	103778367	-	1	NA	NA	NA	13008	NM_001301306	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.035000	0.517413	
mm_21701.1	chr2	164564097	164564297	-	1	NA	NA	NA	1481	NM_026323	67701	Mm.27289	NM_026323	ENSMUSG00000017723	Wfdc2	1600023A02Rik|HE4|WAP5	WAP four-disulfide core domain 2	protein-coding	0.020000	0.522388	
mm_111892.1	chr12	108275313	108275513	-	1	NA	NA	NA	4	NM_001159910	668158	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010	coiled-coil domain containing 85C	protein-coding	0.135000	0.805970	
mm_65653.1	chr7	28131660	28131860	-	1	NA	NA	NA	2294	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.502488	
mm_113632.1	chr13	42051203	42051403	+	1	NA	NA	NA	-718	NM_007772	110521	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.055000	0.597015	87(GTCTTTTAATAG,-,0.00),89(CTTTTAATAGAA,+,0.00)
mm_69526.1	chr7	135652003	135652203	-	1	NA	NA	NA	204	NM_001316681	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.040000	0.567164	13(CCTTAAAGGCAC,+,0.00)
mm_18738.1	chr2	72997100	72997300	-	1	NA	NA	NA	-16754	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.025000	0.557214	
mm_101063.1	chr11	9048418	9048618	-	1	NA	NA	NA	-74	NM_001037928	626870	Mm.369429	NM_001037928	ENSMUSG00000040978	Gm11992	OTTMUSG00000005148	predicted gene 11992	protein-coding	0.080000	0.636816	
mm_103127.1	chr11	70220898	70221098	-	1	NA	NA	NA	-4	NM_172371	69309	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	0.015000	0.487562	
mm_145421.1	chr18	58555995	58556195	+	1	NA	NA	NA	-145	NM_001081072	225579	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0.015000	0.577114	
mm_19860.1	chr2	113829581	113829781	-	1	NA	NA	NA	-590	NM_009162	20394	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	0.000000	0.417910	64(ACTTTTAGGGCC,+,0.00)
mm_139495.1	chr17	56225098	56225298	+	1	NA	NA	NA	-6309	NM_172624	224897	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	0.005000	0.547264	
mm_3140.1	chr1	135133769	135133969	+	1	NA	NA	NA	1144	NM_177081	320139	Mm.258388	NM_177081	ENSMUSG00000031506	Ptpn7	BPTP-4|C920001D21Rik|HEPTP|LC-PTP|LPTP	protein tyrosine phosphatase, non-receptor type 7	protein-coding	0.020000	0.616915	
mm_24512.1	chr3	92598587	92598787	+	1	NA	NA	NA	-9663	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.010000	0.427861	
mm_77858.1	chr9	5312775	5312975	+	1	NA	NA	NA	4026	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.000000	0.248756	
mm_1208.1	chr1	62726386	62726586	+	1	NA	NA	NA	23169	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.015000	0.547264	
mm_6349.1	chr1	71643001	71643201	-	1	NA	NA	NA	10133	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.030000	0.512438	
mm_100439.1	chr11	119486215	119486415	+	1	NA	NA	NA	-5032	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.000000	0.442786	
mm_78001.1	chr9	8901642	8901842	+	1	NA	NA	NA	1909	NM_008829	18667	Mm.12798	NM_008829	ENSMUSG00000031870	Pgr	9930019P03Rik|BB114106|ENSMUSG00000074510|NR3C3|PR|PR-A|PR-B	progesterone receptor	protein-coding	0.130000	0.751244	
mm_165580.1	chr3	28463581	28463781	+	1	NA	NA	NA	43738	NR_130342	100628591		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA	0.020000	0.502488	
mm_51830.1	chr6	89422148	89422348	+	1	NA	NA	NA	-59635	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.010000	0.567164	
mm_61829.1	chr7	88278034	88278234	+	1	NA	NA	NA	49	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.070000	0.631841	
mm_126314.1	chr15	79671042	79671242	+	1	NA	NA	NA	274	NM_172609	223696	Mm.246435	NM_172609	ENSMUSG00000022427	Tomm22	2310047D01|Tom22	translocase of outer mitochondrial membrane 22 homolog (yeast)	protein-coding	0.125000	0.716418	
mm_115822.1	chr13	20091424	20091624	-	1	NA	NA	NA	1017	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.100000	0.646766	
mm_4441.1	chr1	172513151	172513351	+	1	NA	NA	NA	-7879	NM_027972	71870	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	0.040000	0.592040	
mm_17532.1	chr2	29624707	29624907	-	1	NA	NA	NA	5087	NM_001039086	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.015000	0.477612	
mm_70579.1	chr8	13167125	13167325	+	1	NA	NA	NA	8064	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.010000	0.393035	
mm_16770.1	chr2	9879475	9879675	-	1	NA	NA	NA	-975	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.045000	0.606965	
mm_72868.1	chr8	88657987	88658187	+	1	NA	NA	NA	10740	NM_145857	257632	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0.000000	0.487562	
mm_158718.1	chrX	162829256	162829456	-	1	NA	NA	NA	98	NM_001290776	353170	Mm.270186	NM_178935	ENSMUSG00000038344	Txlng	4932441K18Rik|Fiat|Lrp	taxilin gamma	protein-coding	0.090000	0.651741	
mm_76299.1	chr8	84236954	84237154	-	1	NA	NA	NA	-12	NM_172503	212168	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	0.100000	0.681592	10(GAGTCTTAAAGG,-,0.00),13(TCTTAAAGGGGC,+,0.00)
mm_45387.1	chr5	66145646	66145846	-	1	NA	NA	NA	5232	NM_001291226	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.015000	0.353234	22(CCTTTTATGAGT,+,0.00)
mm_66707.1	chr7	45923093	45923293	-	1	NA	NA	NA	-1767	NM_010129	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.055000	0.582090	
mm_144321.1	chr18	12741247	12741447	+	1	NA	NA	NA	-8	NM_001042419	71132	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.090000	0.661692	-34(GGGTATAAATAG,-,0.00)
mm_107344.1	chr12	32724628	32724828	+	1	NA	NA	NA	-95607	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.015000	0.462687	
mm_128290.1	chr15	37233002	37233202	-	1	NA	NA	NA	66	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	0.095000	0.671642	
mm_114136.1	chr13	55242826	55243026	+	1	NA	NA	NA	33144	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.000000	0.343284	
mm_66386.1	chr7	44016018	44016218	-	1	NA	NA	NA	3421	NM_010115	13647	Mm.439663	NM_010115		Egfbp2	Egfbp-2|Klk1b26|mGk-13	epidermal growth factor binding protein type B	protein-coding	0.020000	0.572139	
mm_151864.1	chr19	5797395	5797595	-	1	NA	NA	NA	-1514	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.010000	0.472637	
mm_173333.1	chrY	90784974	90785174	+	1	NA	NA	NA	-368	NR_137282	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.035000	0.442786	
mm_159293.1	chr2	174643548	174643748	+	1	NA	NA	NA	114	NM_001099328	100043757	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	ENSMUSG00000050600|OTTMUSG00000017459	zinc finger protein 831	protein-coding	0.030000	0.661692	
mm_73264.1	chr8	104345183	104345383	+	1	NA	NA	NA	4689	NM_024217	68119	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.010000	0.472637	
mm_82329.1	chr9	9142325	9142525	-	1	NA	NA	NA	-93863	NR_045754	100579151	Mm.412450	NR_045754	ENSMUSG00000085253	Gm16833	-	predicted gene, 16833	ncRNA	0.005000	0.402985	
mm_117244.1	chr13	64363654	64363854	-	1	NA	NA	NA	6766	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.010000	0.407960	
mm_108016.1	chr12	73595415	73595615	+	1	NA	NA	NA	10719	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.020000	0.467662	
mm_134819.1	chr16	25959942	25960142	-	1	NA	NA	NA	145742	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.005000	0.432836	
mm_120843.1	chr14	75197832	75198032	+	1	NA	NA	NA	-44355	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.025000	0.527363	69(CCTCTAATAGAC,+,0.00)
mm_102951.1	chr11	69631238	69631438	-	1	NA	NA	NA	-1633	NM_011814	23879	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0.015000	0.427861	
mm_60297.1	chr7	44015983	44016183	+	1	NA	NA	NA	3386	NM_010115	13647	Mm.439663	NM_010115		Egfbp2	Egfbp-2|Klk1b26|mGk-13	epidermal growth factor binding protein type B	protein-coding	0.015000	0.567164	
mm_92066.1	chr10	62527324	62527524	-	1	NA	NA	NA	-19669	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.055000	0.577114	
mm_58171.1	chr6	142702175	142702375	-	1	NA	NA	NA	-1	NM_001310143	20928	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0.070000	0.636816	
mm_40235.1	chr5	37338509	37338709	+	1	NA	NA	NA	131	NM_145920	68525	Mm.25506	NM_145920	ENSMUSG00000050248	Evc2	1110017L09Rik|Lbn|limbin	Ellis van Creveld syndrome 2	protein-coding	0.070000	0.716418	
mm_1439.1	chr1	67215428	67215628	+	1	NA	NA	NA	92501	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.020000	0.452736	
mm_63102.1	chr7	122628344	122628544	+	1	NA	NA	NA	-43300	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.010000	0.417910	-40(GCTTTTAGACAA,+,0.00),-24(CCATCTAAAAGC,-,0.00)
mm_112128.1	chr12	112929709	112929909	-	1	NA	NA	NA	-314	NM_010588	16450	Mm.186146	NM_010588	ENSMUSG00000002799	Jag2	D12Ggc2e|Serh|mJagged2-1|sm	jagged 2	protein-coding	0.145000	0.771144	
mm_106066.1	chr11	116138682	116138882	-	1	NA	NA	NA	86	NM_024177	60441	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	0.100000	0.681592	
mm_125248.1	chr15	34674902	34675102	+	1	NA	NA	NA	-71	NR_045883	71637	Mm.410827	NR_045883		4930413F20Rik	-	RIKEN cDNA 4930413F20 gene	ncRNA	0.005000	0.482587	
mm_70893.1	chr8	25597600	25597800	+	1	NA	NA	NA	-213	NM_173012	270035	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	0.065000	0.616915	
mm_65896.1	chr7	30169634	30169834	-	1	NA	NA	NA	-7	NM_011980	26465	Mm.446516	NM_011980	ENSMUSG00000037029	Zfp146	OZF|Znf146	zinc finger protein 146	protein-coding	0.070000	0.606965	
mm_166682.1	chr6	99173283	99173483	-	1	NA	NA	NA	93132	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.020000	0.462687	
mm_1828.1	chr1	82676287	82676487	+	1	NA	NA	NA	-48503	NM_001310697	75734	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	0.010000	0.298507	89(TTTTTAAAAGTC,+,0.00)
mm_28512.1	chr3	92584071	92584271	-	1	NA	NA	NA	4853	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.005000	0.507463	
mm_169731.1	chr15	81811314	81811514	+	1	NA	NA	NA	0	NM_017376	21685	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.100000	0.666667	
mm_106363.1	chr11	118393863	118394063	-	1	NA	NA	NA	7968	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.030000	0.567164	
mm_53698.1	chr6	142756738	142756938	+	1	NA	NA	NA	152	NM_009908	12764	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.145000	0.776119	
mm_136325.1	chr16	92321336	92321536	-	1	NA	NA	NA	5	NM_029252	75328	Mm.72970	NM_029252	ENSMUSG00000051728	4930563D23Rik	-	RIKEN cDNA 4930563D23 gene	protein-coding	0.025000	0.532338	
mm_163379.1	chr12	48529528	48529728	-	1	NA	NA	NA	-228166	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0.000000	0.258706	
mm_13965.1	chr2	121424466	121424666	+	1	NA	NA	NA	10664	NM_007952	14827	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	0.005000	0.422886	
mm_133882.1	chr16	96525296	96525496	+	1	NA	NA	NA	57790	NM_008791	18546	Mm.5023	NM_008791	ENSMUSG00000090223	Pcp4	P16Rimb19|Pcp-4|Pep19	Purkinje cell protein 4	protein-coding	0.020000	0.417910	
mm_42216.1	chr5	113068617	113068817	+	1	NA	NA	NA	1400	NM_007773	12961	Mm.1215	NM_007773	ENSMUSG00000042240	Crybb2	Cryb-2	crystallin, beta B2	protein-coding	0.015000	0.592040	
mm_76575.1	chr8	89006547	89006747	-	1	NA	NA	NA	-18088	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.105000	0.661692	
mm_171667.1	chr4	46575804	46576004	+	1	NA	NA	NA	-9464	NM_178893	107684	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.020000	0.412935	
mm_88954.1	chr10	81384335	81384535	+	1	NA	NA	NA	7	NM_133964	102115	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	0.115000	0.641791	
mm_85264.1	chr9	99420228	99420428	-	1	NA	NA	NA	16384	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.020000	0.472637	
mm_110012.1	chr12	16589685	16589885	-	1	NA	NA	NA	-15	NM_172950	14245	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188	lipin 1	protein-coding	0.080000	0.661692	
mm_13447.1	chr2	105163022	105163222	+	1	NA	NA	NA	36593	NM_144783	22431	Mm.389339	NM_144783	ENSMUSG00000016458	Wt1	D630046I19Rik|Wt-1	Wilms tumor 1 homolog	protein-coding	0.005000	0.442786	
mm_30681.1	chr4	11191683	11191883	+	1	NA	NA	NA	74	NM_001282943	12448	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	0.090000	0.681592	
mm_95692.1	chr11	54314880	54315080	+	1	NA	NA	NA	77	NM_001033599	216739	Mm.267478	NM_144823	ENSMUSG00000020333	Acsl6	A330035H04Rik|AW050338|Facl6|LACS|Lacsl|mKIAA0837	acyl-CoA synthetase long-chain family member 6	protein-coding	0.005000	0.611940	
mm_25227.1	chr3	103860179	103860379	+	1	NA	NA	NA	2	NM_008979	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.010000	0.517413	
mm_28461.1	chr3	90694958	90695158	-	1	NA	NA	NA	663	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.005000	0.512438	
mm_152238.1	chr19	8711938	8712138	-	1	NA	NA	NA	1859	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.015000	0.452736	
mm_171128.1	chr3	146499812	146500012	+	1	NA	NA	NA	76	NM_010318	14707	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	0.150000	0.731343	
mm_42207.1	chr5	112449310	112449510	+	1	NA	NA	NA	-16	NM_001177504	625464	Mm.389676	NM_001177504	ENSMUSG00000072722	Gm6588	EG625464	predicted gene 6588	protein-coding	0.020000	0.542289	
mm_39561.1	chr5	23102282	23102482	+	1	NA	NA	NA	331971	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.015000	0.388060	19(CTCTCTTTAAGC,-,0.00)
mm_111270.1	chr12	85288323	85288523	-	1	NA	NA	NA	-168	NM_172414	72350	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	0.030000	0.592040	
mm_21650.1	chr2	164333535	164333735	-	1	NA	NA	NA	870	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.030000	0.517413	63(TGGTTTTAAAGG,-,0.00)
mm_127512.1	chr15	101740135	101740335	+	1	NA	NA	NA	2862	NM_019956	56735	Mm.358677	NM_019956	ENSMUSG00000051879	Krt71	AA589543|Ca|Cal4|Cu|Krt2-6g|mK6irs|mK6irs1	keratin 71	protein-coding	0.040000	0.547264	
mm_46102.1	chr5	92347526	92347726	-	1	NA	NA	NA	1263	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.010000	0.452736	
mm_171100.1	chr3	132828674	132828874	+	1	NA	NA	NA	49822	NR_102297	101243624	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	0.060000	0.661692	
mm_96862.1	chr11	70106173	70106373	+	1	NA	NA	NA	13629	NM_001313927	11890	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	0.010000	0.542289	
mm_6501.1	chr1	74295192	74295392	-	1	NA	NA	NA	9044	NM_027154	69660	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.030000	0.616915	
mm_47301.1	chr5	122371878	122372078	-	1	NA	NA	NA	-15	NM_026883	68948	Mm.474469	NM_026883	ENSMUSG00000029463	Fam216a	1500011H22Rik	family with sequence similarity 216, member A	protein-coding	0.115000	0.726368	
mm_65261.1	chr7	19906444	19906644	-	1	NA	NA	NA	14599	NM_027514	52118	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.000000	0.447761	-96(TCCTCTATAAGA,-,0.00)
mm_70429.1	chr8	11555689	11555889	+	1	NA	NA	NA	27	NM_001302458	26356	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.125000	0.701493	
mm_65572.1	chr7	27195560	27195760	-	1	NA	NA	NA	100	NM_001046637	53607	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0.040000	0.512438	
mm_63632.1	chr7	128523166	128523366	+	1	NA	NA	NA	-317	NM_013863	29810	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0.045000	0.522388	
mm_72279.1	chr8	75100211	75100411	+	1	NA	NA	NA	6693	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.015000	0.527363	
mm_106915.1	chr12	8216551	8216751	+	1	NA	NA	NA	8524	NM_001167767	68832	Mm.25608	NM_172401	ENSMUSG00000037669	Ldah	1110057K04Rik|mLDAH	lipid droplet associated hydrolase	protein-coding	0.020000	0.437811	
mm_22562.1	chr3	9942852	9943052	+	1	NA	NA	NA	-69633	NM_001272097	16592	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0.000000	0.452736	
mm_30768.1	chr4	16164002	16164202	+	1	NA	NA	NA	-8	NR_045765	100415915	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0.045000	0.646766	
mm_170604.1	chr19	5844090	5844290	-	1	NA	NA	NA	1288	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.025000	0.577114	
mm_130612.1	chr15	99931559	99931759	-	1	NA	NA	NA	-1	NM_028180	72277	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	0.040000	0.542289	
mm_99687.1	chr11	106036866	106037066	+	1	NA	NA	NA	94	NM_027946	71833	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.115000	0.716418	
mm_64822.1	chr7	7299416	7299616	-	1	NA	NA	NA	41	NR_126156	12727	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2	chloride channel, voltage-sensitive 4	protein-coding	0.065000	0.552239	75(TTGTTTAAATGG,-,0.00)
mm_69825.1	chr7	141265924	141266124	-	1	NA	NA	NA	400	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.045000	0.522388	
mm_51930.1	chr6	91476687	91476887	+	1	NA	NA	NA	3036	NM_028766	74122	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	0.010000	0.567164	
mm_102639.1	chr11	62617036	62617236	-	1	NA	NA	NA	12606	NR_028541	100217444		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	0.005000	0.388060	
mm_35957.1	chr4	53130869	53131069	-	1	NA	NA	NA	28926	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.005000	0.407960	-76(GTTTTAAAAGAG,+,0.00)
mm_17021.1	chr2	18998158	18998358	-	1	NA	NA	NA	-61	NR_024323	74629	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0.190000	0.805970	
mm_57656.1	chr6	128486058	128486258	-	1	NA	NA	NA	40562	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.005000	0.437811	
mm_26170.1	chr3	138285192	138285392	+	1	NA	NA	NA	7647	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.005000	0.417910	
mm_117594.1	chr13	89742403	89742603	-	1	NA	NA	NA	9	NM_001081249	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.035000	0.616915	
mm_79993.1	chr9	67033801	67034001	+	1	NA	NA	NA	9970	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.025000	0.537313	
mm_169348.1	chr14	20347918	20348118	-	1	NA	NA	NA	103	NM_027475	70601	Mm.35105	NM_027475	ENSMUSG00000021810	Ecd	5730461K03Rik|Hsgt1	ecdysoneless homolog (Drosophila)	protein-coding	0.070000	0.611940	
mm_86167.1	chr9	118925308	118925508	-	1	NA	NA	NA	-1128	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.080000	0.626866	
mm_43527.1	chr5	137287981	137288181	+	1	NA	NA	NA	-173	NM_009599	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.080000	0.666667	
mm_94921.1	chr11	29505466	29505666	+	1	NA	NA	NA	9467	NM_026465	67939	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0.000000	0.238806	
mm_103695.1	chr11	79516172	79516372	-	1	NA	NA	NA	7490	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.000000	0.447761	
mm_167742.1	chr9	108339646	108339846	+	1	NA	NA	NA	666	NM_001329528	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.035000	0.472637	
mm_66922.1	chr7	61055311	61055511	-	1	NA	NA	NA	559916	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.015000	0.383085	
mm_86718.1	chr10	19011994	19012194	+	1	NA	NA	NA	-131	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.025000	0.492537	
mm_91003.1	chr10	14545263	14545463	-	1	NA	NA	NA	-327	NM_001002268	215798	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.090000	0.736318	
mm_36169.1	chr4	61835088	61835288	-	1	NA	NA	NA	-8	NM_008649	17844	Mm.445286	NM_008649	ENSMUSG00000058523	Mup5	Mup18	major urinary protein 5	protein-coding	0.020000	0.398010	-34(GCGTATATAAGG,-,0.00)
mm_47882.1	chr5	134703142	134703342	-	1	NA	NA	NA	-14652	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.010000	0.527363	
mm_25326.1	chr3	106567770	106567970	+	1	NA	NA	NA	-20068	NM_133869	99712	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.005000	0.318408	
mm_5312.1	chr1	22512402	22512602	-	1	NA	NA	NA	-79659	NM_183018	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.045000	0.537313	
mm_76318.1	chr8	84687459	84687659	-	1	NA	NA	NA	303	NM_025788	66830	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	0.120000	0.751244	
mm_167214.1	chr8	4419256	4419456	+	1	NA	NA	NA	69768	NM_009138	20300	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0.015000	0.472637	
mm_144059.1	chr17	90657949	90658149	-	1	NA	NA	NA	135427	NR_136930	102634634		NR_136930		Gm20491	-	enolase 1, alpha non-neuron pseudogene	pseudo	0.000000	0.388060	
mm_168702.1	chr11	97859883	97860083	+	1	NA	NA	NA	19203	NM_001080935	68127	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0.005000	0.522388	
mm_20761.1	chr2	140790341	140790541	-	1	NA	NA	NA	-118965	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.015000	0.457711	
mm_103337.1	chr11	74674276	74674476	-	1	NA	NA	NA	24881	NM_001081158	74148	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.010000	0.472637	
mm_75166.1	chr8	36613806	36614006	-	1	NA	NA	NA	37	NM_015802	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.090000	0.711443	
mm_22800.1	chr3	24356685	24356885	+	1	NA	NA	NA	427221	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.010000	0.343284	
mm_83982.1	chr9	57299748	57299948	-	1	NA	NA	NA	-37249	NM_028820	74211	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.005000	0.457711	-26(AGTTATATAAGG,-,0.00)
mm_90775.1	chr10	5922263	5922463	-	1	NA	NA	NA	37	NM_001161822	56533	Mm.44606	NM_019958	ENSMUSG00000019775	Rgs17	6430507P11Rik|Rgsz2	regulator of G-protein signaling 17	protein-coding	0.085000	0.706468	
mm_114448.1	chr13	66932723	66932923	+	1	NA	NA	NA	-7	NM_008959	19210	Mm.281464	NM_008959	ENSMUSG00000021518	Ptdss1	AU044268|AW539008|PSS-1|mKIAA0024	phosphatidylserine synthase 1	protein-coding	0.080000	0.587065	
mm_54902.1	chr6	47556006	47556206	-	1	NA	NA	NA	38924	NM_007971	14056	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.010000	0.417910	-14(CCTTATATGGGG,+,0.00)
mm_150511.1	chr19	39025893	39026093	+	1	NA	NA	NA	18974	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.005000	0.422886	
mm_67414.1	chr7	80130315	80130515	-	1	NA	NA	NA	-15065	NM_173011	269951	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.025000	0.606965	
mm_163405.1	chr12	75521412	75521612	+	1	NA	NA	NA	74688	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.000000	0.452736	
mm_172803.1	chr9	120127713	120127913	+	1	NA	NA	NA	47	NM_011029	16785	Mm.4071	NM_011029	ENSMUSG00000032518	Rpsa	67kDa|67lr|AL022858|Lamr|Lamr1|Lamrl1|MLR|P40|P40-3|P40-8	ribosomal protein SA	protein-coding	0.120000	0.641791	-59(GGTTATTTAAGG,-,0.00)
mm_81741.1	chr9	113793253	113793453	+	1	NA	NA	NA	23	NM_001286603	76499	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.030000	0.542289	
mm_34775.1	chr4	153975046	153975246	+	1	NA	NA	NA	-65	NM_007859	13368	Mm.388918	NM_007859	ENSMUSG00000029027	Dffb	40kDa|5730477D02Rik|CAD|CPAN|DFF40|Didff	DNA fragmentation factor, beta subunit	protein-coding	0.125000	0.701493	
mm_16202.1	chr2	173022952	173023152	+	1	NA	NA	NA	1150	NM_019547	56190	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.020000	0.527363	
mm_107588.1	chr12	47812905	47813105	+	1	NA	NA	NA	488457	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0.075000	0.542289	
mm_59010.1	chr7	19228239	19228439	+	1	NA	NA	NA	-50	NM_207525	403187	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.125000	0.736318	
mm_94343.1	chr11	4736152	4736352	+	1	NA	NA	NA	10526	NM_138948	192650	Mm.207056	NM_138948	ENSMUSG00000009075	Cabp7	-	calcium binding protein 7	protein-coding	0.005000	0.577114	
mm_80624.1	chr9	88956891	88957091	+	1	NA	NA	NA	71	NM_009742	12044	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0.010000	0.512438	
mm_51378.1	chr6	73248483	73248683	+	1	NA	NA	NA	78	NM_019879	56451	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	0.045000	0.507463	
mm_20164.1	chr2	122152769	122152969	-	1	NA	NA	NA	5182	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.000000	0.283582	
mm_108053.1	chr12	73913414	73913614	+	1	NA	NA	NA	5647	NM_001313919	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.000000	0.333333	
mm_98061.1	chr11	85831698	85831898	+	1	NA	NA	NA	590	NR_077059	69909	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.040000	0.482587	
mm_57799.1	chr6	129326616	129326816	-	1	NA	NA	NA	5065	NM_199034	381816	Mm.46114	NM_199034	ENSMUSG00000047720	4922502D21Rik	Clec2m|Gm1074|SPATA78	RIKEN cDNA 4922502D21 gene	protein-coding	0.040000	0.447761	
mm_67530.1	chr7	81213578	81213778	-	1	NA	NA	NA	-126	NM_008803	18584	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.180000	0.781095	
mm_82782.1	chr9	28994692	28994892	-	1	NA	NA	NA	968337	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.015000	0.552239	
mm_135138.1	chr16	35852670	35852870	-	1	NA	NA	NA	18612	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.015000	0.398010	
mm_20678.1	chr2	132385342	132385542	-	1	NA	NA	NA	5	NM_144944	246313	Mm.283777	NM_144944	ENSMUSG00000050558	Prokr2	B830005M06Rik|EG-VEGRF2|Gpcr73l1|Gpr73l1|PKR2	prokineticin receptor 2	protein-coding	0.060000	0.636816	
mm_155379.1	chrX	71803513	71803713	+	1	NA	NA	NA	-12467	NM_001290781	67048	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding	0.030000	0.487562	
mm_138407.1	chr17	35066806	35067006	+	1	NA	NA	NA	-419	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.005000	0.462687	
mm_140868.1	chr17	23777151	23777351	-	1	NA	NA	NA	-5660	NM_153791	224613	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	0.000000	0.467662	
mm_160801.1	chr11	5129743	5129943	-	1	NA	NA	NA	22379	NM_080595	140703	Mm.840	NM_080595	ENSMUSG00000034164	Emid1	AW122071|CO-5|Emu1	EMI domain containing 1	protein-coding	0.035000	0.601990	
mm_57551.1	chr6	126840743	126840943	-	1	NA	NA	NA	8301	NM_025358	66108	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	0.020000	0.398010	86(CTATTTAAAAAG,-,0.00)
mm_12862.1	chr2	83775258	83775458	+	1	NA	NA	NA	-37370	NM_175514	241520	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	0.000000	0.447761	
mm_87305.1	chr10	42614147	42614347	+	1	NA	NA	NA	-30659	NM_152229	21907	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	0.090000	0.706468	
mm_5646.1	chr1	40516366	40516566	-	1	NA	NA	NA	1104	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.025000	0.437811	
mm_94532.1	chr11	9118482	9118682	+	1	NA	NA	NA	75	NM_001159402	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.055000	0.631841	10(TCCTTTTAAAAG,-,0.00),11(CCTTTTAAAAGC,+,0.00),11(CCTTTTAAAAGC,-,0.00),12(CTTTTAAAAGCT,+,0.00)
mm_150944.1	chr19	46307262	46307462	+	1	NA	NA	NA	1432	NM_001177370	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.015000	0.537313	
mm_78039.1	chr9	14276397	14276597	+	1	NA	NA	NA	196	NM_030261	75747	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.160000	0.741294	
mm_14619.1	chr2	136765296	136765496	+	1	NA	NA	NA	51946	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.020000	0.482587	
mm_87231.1	chr10	40570514	40570714	+	1	NA	NA	NA	252	NM_027572	70840	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.040000	0.577114	
mm_155280.1	chrX	61127873	61128073	+	1	NA	NA	NA	11595	NR_030706	331424	Mm.127263	NM_177916	ENSMUSG00000071753	C230004F18Rik	-	RIKEN cDNA C230004F18 gene	ncRNA	0.000000	0.402985	
mm_80162.1	chr9	71157311	71157511	+	1	NA	NA	NA	5222	NM_001271843	64008	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.015000	0.427861	
mm_61522.1	chr7	78913871	78914071	+	1	NA	NA	NA	206	NM_020583	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.010000	0.532338	
mm_73625.1	chr8	110618583	110618783	+	1	NA	NA	NA	45	NM_146216	234729	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0.135000	0.741294	
mm_170293.1	chr18	3005607	3005807	+	1	NA	NA	NA	117705	NM_001167539	100312476	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.005000	0.447761	
mm_106237.1	chr11	117774944	117775144	-	1	NA	NA	NA	5577	NM_181321	217353	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.025000	0.577114	
mm_472.1	chr1	36461902	36462102	+	1	NA	NA	NA	-9595	NM_033570	94220	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	0.005000	0.512438	
mm_88775.1	chr10	80398901	80399101	+	1	NA	NA	NA	530	NM_013595	17192	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.150000	0.751244	
mm_59118.1	chr7	19851908	19852108	+	1	NA	NA	NA	5	NM_001270489	100502736	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0.030000	0.601990	
mm_88124.1	chr10	69236278	69236478	+	1	NA	NA	NA	23184	NM_001252638	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.025000	0.457711	
mm_6699.1	chr1	80758447	80758647	-	1	NA	NA	NA	6	NM_175291	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.115000	0.706468	
mm_46576.1	chr5	107289499	107289699	-	1	NA	NA	NA	-4	NM_011578	21814	Mm.200775	NM_011578	ENSMUSG00000029287	Tgfbr3	1110036H20Rik|AU015626|AW215636|TBRIII	transforming growth factor, beta receptor III	protein-coding	0.115000	0.726368	
mm_126266.1	chr15	79109027	79109227	+	1	NA	NA	NA	144	NM_177461	27008	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	0.135000	0.776119	
mm_5276.1	chr1	19337439	19337639	-	1	NA	NA	NA	125485	NM_001025305	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.005000	0.457711	
mm_115501.1	chr13	3918048	3918248	-	1	NA	NA	NA	72	NM_019671	56349	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0.080000	0.656716	
mm_61593.1	chr7	80025814	80026014	+	1	NA	NA	NA	-314	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.025000	0.437811	25(CCTTTTAGAGAA,+,0.00)
mm_60232.1	chr7	43671949	43672149	+	1	NA	NA	NA	18	NM_145582	233189	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.040000	0.557214	
mm_157772.1	chrX	73717757	73717957	-	1	NA	NA	NA	-42	NM_001313698	27061	Mm.17	NM_012060	ENSMUSG00000002015	Bcap31	Bap31	B cell receptor associated protein 31	protein-coding	0.040000	0.592040	
mm_58763.1	chr7	15881526	15881726	+	1	NA	NA	NA	-991	NR_038092	546024	Mm.259041	NM_001033638	ENSMUSG00000074365	Crxos	AA606869|AY590891|Crxos1|Egam1	cone-rod homeobox, opposite strand	protein-coding	0.010000	0.547264	-31(GGCCAGAAAGGG,-,0.00)
mm_30563.1	chr4	3789919	3790119	+	1	NA	NA	NA	45636	NM_026147	67427	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.015000	0.507463	
mm_128928.1	chr15	74636171	74636371	-	1	NA	NA	NA	47	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.000000	0.527363	
mm_87002.1	chr10	26799103	26799303	+	1	NA	NA	NA	26691	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.015000	0.492537	
mm_137708.1	chr17	29099250	29099450	+	1	NA	NA	NA	5581	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.020000	0.557214	
mm_124375.1	chr14	106261152	106261352	-	1	NA	NA	NA	155054	NR_073203	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0.020000	0.393035	
mm_140878.1	chr17	23828726	23828926	-	1	NA	NA	NA	283	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.115000	0.656716	
mm_7590.1	chr1	125435446	125435646	-	1	NA	NA	NA	181	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.070000	0.706468	
mm_70896.1	chr8	25601411	25601611	+	1	NA	NA	NA	-90	NM_001308481	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.085000	0.656716	
mm_113331.1	chr13	31558067	31558267	+	1	NA	NA	NA	-3	NM_008239	15220	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	0.120000	0.736318	
mm_154672.1	chrX	7883939	7884139	+	1	NA	NA	NA	-205	NM_001083937	22232	Mm.214976	NM_078484	ENSMUSG00000031156	Slc35a2	AI327289|Had-1|Had1|Sfc8|UGT|Ugalt	solute carrier family 35 (UDP-galactose transporter), member A2	protein-coding	0.075000	0.597015	
mm_63773.1	chr7	131410580	131410780	+	1	NA	NA	NA	79	NM_025826	66885	Mm.334274	NM_025826	ENSMUSG00000030861	Acadsb	1300003O09Rik|2-MEBCAD|BB066609|SBCAD	acyl-Coenzyme A dehydrogenase, short/branched chain	protein-coding	0.075000	0.671642	
mm_29435.1	chr3	109361905	109362105	-	1	NA	NA	NA	21322	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.020000	0.487562	66(CATTTTAAAAGC,-,0.00)
mm_23976.1	chr3	85971023	85971223	+	1	NA	NA	NA	31368	NM_001001650	368202	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding	0.110000	0.766169	
mm_144916.1	chr18	37504181	37504381	+	1	NA	NA	NA	17	NM_053145	93891	Mm.172449	NM_053145	ENSMUSG00000046191	Pcdhb20	Pcdhb14|PcdhbT	protocadherin beta 20	protein-coding	0.020000	0.447761	
mm_8363.1	chr1	150465484	150465684	-	1	NA	NA	NA	581	NM_021400	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.035000	0.442786	
mm_101646.1	chr11	36538721	36538921	-	1	NA	NA	NA	405420	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.000000	0.293532	
mm_9490.1	chr1	173729362	173729562	-	1	NA	NA	NA	12347	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.000000	0.487562	
mm_95772.1	chr11	54909008	54909208	+	1	NA	NA	NA	6254	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.015000	0.522388	
mm_115699.1	chr13	14064605	14064805	-	1	NA	NA	NA	921	NM_198122	94246	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.110000	0.726368	
mm_167895.1	chrX	70630404	70630604	+	1	NA	NA	NA	84946	NM_001081476	628053	Mm.439630	NM_001081476		Gm14725	OTTMUSG00000017827	predicted gene 14725	protein-coding	0.005000	0.402985	
mm_136222.1	chr16	90143670	90143870	-	1	NA	NA	NA	1533	NR_033476	100038709	Mm.484070	NR_033476		Gm10789	ENSMUSG00000074924	predicted gene 10789	ncRNA	0.085000	0.696517	
mm_64764.1	chr7	4964277	4964477	-	1	NA	NA	NA	-29	NM_001146329	381836	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	0.035000	0.606965	
mm_102620.1	chr11	62463262	62463462	-	1	NA	NA	NA	4902	NM_001039536	327942	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.000000	0.437811	
mm_30474.1	chr3	154710939	154711139	-	1	NA	NA	NA	-94	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.010000	0.452736	
mm_141983.1	chr17	35164796	35164996	-	1	NA	NA	NA	-19	NM_020027	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.120000	0.756219	
mm_157188.1	chrX	11126503	11126703	-	1	NA	NA	NA	-172654	NM_001111037	100042922	Mm.374311	NM_001111037	ENSMUSG00000100626	H2al1a	Gm14483|OTTMUSG00000016789	H2A histone family member L1A	protein-coding	0.020000	0.542289	
mm_36866.1	chr4	107058818	107059018	-	1	NA	NA	NA	7948	NM_025500	56280	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0.025000	0.587065	
mm_27981.1	chr3	81965003	81965203	-	1	NA	NA	NA	10625	NM_019911	56720	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	0.005000	0.407960	
mm_776.1	chr1	44551577	44551777	+	1	NA	NA	NA	6	NM_028450	70676	Mm.133132	NM_027506	ENSMUSG00000056870	Gulp1	3110030A04Rik|5730529O06Rik|CED-6|Ced6|GULP|Gulp-2	GULP, engulfment adaptor PTB domain containing 1	protein-coding	0.065000	0.641791	
mm_12479.1	chr2	71529456	71529656	+	1	NA	NA	NA	111	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.140000	0.751244	
mm_100349.1	chr11	118428151	118428351	+	1	NA	NA	NA	-206	NM_001204129	56745	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.015000	0.527363	
mm_170998.1	chr2	75661934	75662134	+	1	NA	NA	NA	2744	NR_033513	627828	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	0.010000	0.338308	-88(TGGTATTAAAGA,-,0.00)
mm_172907.1	chr9	59661870	59662070	+	1	NA	NA	NA	5602	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.000000	0.502488	
mm_6711.1	chr1	82287352	82287552	-	1	NA	NA	NA	3987	NM_010570	16367	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.020000	0.562189	
mm_34424.1	chr4	145283637	145283837	+	1	NA	NA	NA	31410	NM_009401	21941	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0.010000	0.477612	-36(GGGCTGAAAAGG,-,0.00)
mm_156638.1	chrX	157598076	157598276	+	1	NA	NA	NA	539	NM_172307	270669	Mm.37577	NM_172307	ENSMUSG00000046873	Mbtps2	9630032G22Rik|AI662535	membrane-bound transcription factor peptidase, site 2	protein-coding	0.080000	0.572139	
mm_5761.1	chr1	46892958	46893158	-	1	NA	NA	NA	-39549	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.010000	0.378109	-35(CAGCATAAAAAG,-,0.00),-4(AGGTTTAAAAAG,-,0.00)
mm_55335.1	chr6	56362148	56362348	-	1	NA	NA	NA	144	NM_001159952	18575	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0.040000	0.641791	
mm_45134.1	chr5	48866026	48866226	-	1	NA	NA	NA	23431	NM_030265	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.000000	0.318408	
mm_106367.1	chr11	118396664	118396864	-	1	NA	NA	NA	5167	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.030000	0.616915	
mm_39352.1	chr5	9073625	9073825	+	1	NA	NA	NA	-27012	NM_001081029	652925	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.005000	0.492537	
mm_31338.1	chr4	46469828	46470028	+	1	NA	NA	NA	19002	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.010000	0.442786	
mm_145220.1	chr18	50053395	50053595	+	1	NA	NA	NA	213	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.105000	0.676617	
mm_45030.1	chr5	38936776	38936976	-	1	NA	NA	NA	-60183	NM_013748	27278	Mm.440845	NM_013748	ENSMUSG00000039315	Clnk	MIST	cytokine-dependent hematopoietic cell linker	protein-coding	0.005000	0.472637	
mm_94844.1	chr11	23728725	23728925	+	1	NA	NA	NA	42145	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.000000	0.383085	
mm_30559.1	chr4	3779134	3779334	+	1	NA	NA	NA	56421	NM_026147	67427	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.000000	0.462687	
mm_139129.1	chr17	47505061	47505261	+	1	NA	NA	NA	110	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.070000	0.597015	
mm_123179.1	chr14	57664875	57665075	-	1	NA	NA	NA	-19	NM_020506	57258	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	0.135000	0.711443	
mm_84767.1	chr9	75611187	75611387	-	1	NA	NA	NA	38	NM_016711	50876	Mm.291880	NM_016711	ENSMUSG00000032186	Tmod2	N-Tmod|NTMOD	tropomodulin 2	protein-coding	0.090000	0.686567	
mm_122751.1	chr14	54192380	54192580	-	1	NA	NA	NA	61449	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.358209	
mm_118731.1	chr14	22246919	22247119	+	1	NA	NA	NA	227307	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.000000	0.278607	
mm_2038.1	chr1	87214283	87214483	+	1	NA	NA	NA	444	NM_001039169	26987	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0.100000	0.666667	
mm_71481.1	chr8	46638382	46638582	+	1	NA	NA	NA	21191	NM_009810	12367	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0.015000	0.323383	-77(CCTTTTATAATT,+,0.00)
mm_36029.1	chr4	57119954	57120154	-	1	NA	NA	NA	23102	NM_019427	54357	Mm.28217	NM_019427	ENSMUSG00000028434	Epb41l4b	6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2	erythrocyte membrane protein band 4.1 like 4b	protein-coding	0.030000	0.527363	
mm_60573.1	chr7	44481498	44481698	+	1	NA	NA	NA	-2919	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.492537	
mm_144610.1	chr18	32435169	32435369	+	1	NA	NA	NA	-56985	NR_045403	402767	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.040000	0.452736	
mm_137500.1	chr17	26972277	26972477	+	1	NA	NA	NA	-802	NM_001005916	474156	Mm.328890	NM_001005916	ENSMUSG00000079605	Zbtb9	3930402F13Rik	zinc finger and BTB domain containing 9	protein-coding	0.005000	0.427861	
mm_50023.1	chr6	41118735	41118935	+	1	NA	NA	NA	-83326	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.502488	
mm_139943.1	chr17	71183506	71183706	+	1	NA	NA	NA	-372	NM_022882	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.155000	0.805970	
mm_141858.1	chr17	34803848	34804048	-	1	NA	NA	NA	478	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.015000	0.572139	
mm_45740.1	chr5	86518470	86518670	-	1	NA	NA	NA	30	NM_177162	320454	Mm.184522	NM_177162	ENSMUSG00000079451	Tmprss11g	9930032O22Rik|Desc4	transmembrane protease, serine 11g	protein-coding	0.035000	0.437811	
mm_45573.1	chr5	73339791	73339991	-	1	NA	NA	NA	-944	NM_001310636	433904	Mm.274892	NM_026950	ENSMUSG00000029153	Ociad2	1810027I20Rik	OCIA domain containing 2	protein-coding	0.000000	0.467662	
mm_164636.1	chr17	34211866	34212066	+	1	NA	NA	NA	7487	NM_011530	21355	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.060000	0.611940	
mm_127629.1	chr15	102463537	102463737	+	1	NA	NA	NA	4467	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.010000	0.422886	
mm_108398.1	chr12	81054655	81054855	+	1	NA	NA	NA	27947	NM_022316	64075	Mm.273295	NM_022316	ENSMUSG00000021136	Smoc1	2600002F22Rik|AI848508|SRG	SPARC related modular calcium binding 1	protein-coding	0.005000	0.437811	
mm_92102.1	chr10	63019808	63020008	-	1	NA	NA	NA	392	NM_001347457	432467	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	0.010000	0.388060	
mm_100174.1	chr11	116533166	116533366	+	1	NA	NA	NA	28	NM_025367	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.085000	0.661692	
mm_12638.1	chr2	74711766	74711966	+	1	NA	NA	NA	-127	NM_010468	15434	Mm.430708	NM_010468	ENSMUSG00000079277	Hoxd3	Hox-4.1|Hox-5.5	homeobox D3	protein-coding	0.045000	0.482587	-41(CTTTTTATGACC,+,0.00)
mm_110786.1	chr12	71384110	71384310	-	1	NA	NA	NA	-2	NR_136902	67348	Mm.54261	NR_136902	ENSMUSG00000100668	1700083H02Rik	100041190|Gm3190	RIKEN cDNA 1700083H02 gene	ncRNA	0.005000	0.432836	-29(TCTTATATGGAA,+,0.00)
mm_120965.1	chr14	77904351	77904551	+	1	NA	NA	NA	212	NM_029495	108670	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.040000	0.572139	
mm_143336.1	chr17	66483946	66484146	-	1	NA	NA	NA	-34296	NM_001114098	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.020000	0.472637	-35(GCCTATATAAAC,-,0.00)
mm_80593.1	chr9	85843279	85843479	+	1	NA	NA	NA	527	NM_001164792	21983	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	0.080000	0.696517	
mm_40725.1	chr5	65975788	65975988	+	1	NA	NA	NA	8764	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.025000	0.641791	
mm_48088.1	chr5	136987663	136987863	-	1	NA	NA	NA	196	NM_027318	70103	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	0.080000	0.686567	
mm_19916.1	chr2	115780444	115780644	-	1	NA	NA	NA	141819	NR_035476	100316703		NR_035476	ENSMUSG00000088606	Mir1951	mir-1951|mmu-mir-1951	microRNA 1951	ncRNA	0.000000	0.432836	
mm_168083.1	chr10	123131330	123131530	-	1	NA	NA	NA	-54925	NM_001163025	67074	Mm.169924	NM_153395	ENSMUSG00000034602	Mon2	2610528O22Rik|AW495628|Sf21|mKIAA1040	MON2 homolog, regulator of endosome to Golgi trafficking	protein-coding	0.015000	0.472637	
mm_67689.1	chr7	89509938	89510138	-	1	NA	NA	NA	7548	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.030000	0.517413	
mm_53126.1	chr6	125131811	125132011	+	1	NA	NA	NA	28	NM_138747	110109	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	0.105000	0.651741	
mm_108612.1	chr12	85486139	85486339	+	1	NA	NA	NA	12338	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.085000	0.741294	
mm_132512.1	chr16	37037782	37037982	+	1	NA	NA	NA	26096	NM_001159369	77782	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	0.015000	0.388060	
mm_14017.1	chr2	122150781	122150981	+	1	NA	NA	NA	3194	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.030000	0.482587	
mm_11139.1	chr2	28479285	28479485	+	1	NA	NA	NA	11319	NM_001166031	118451	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	0.035000	0.616915	
mm_1671.1	chr1	74791712	74791912	+	1	NA	NA	NA	-207	NM_009518	22409	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0.075000	0.721393	
mm_28564.1	chr3	93444723	93444923	-	1	NA	NA	NA	2493	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.070000	0.631841	
mm_153369.1	chr19	40271781	40271981	-	1	NA	NA	NA	-265	NM_016861	54132	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	0.050000	0.477612	-32(CCTCTTAAACGG,+,0.00)
mm_90594.1	chr10	128292395	128292595	+	1	NA	NA	NA	5589	NM_031252	83430	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	0.035000	0.537313	
mm_33429.1	chr4	130054996	130055196	+	1	NA	NA	NA	7256	NM_028266	107581	Mm.41860	NM_028266	ENSMUSG00000040690	Col16a1	2700007F12Rik|A530052M23Rik|AI838662|CA1F	collagen, type XVI, alpha 1	protein-coding	0.010000	0.572139	
mm_108021.1	chr12	73605049	73605249	+	1	NA	NA	NA	20353	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.025000	0.447761	
mm_97737.1	chr11	80431371	80431571	+	1	NA	NA	NA	2856	NM_178616	69077	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	0.000000	0.273632	46(GGTCTTATAAGG,-,0.00),48(TCTTATAAGGGT,+,0.00)
mm_80200.1	chr9	72401644	72401844	+	1	NA	NA	NA	-36785	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.005000	0.283582	18(GGCTTTTTAAAA,-,0.00)
mm_152706.1	chr19	17341966	17342166	-	1	NA	NA	NA	-2561	NM_001136484	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.015000	0.532338	
mm_21938.1	chr2	167060015	167060215	-	1	NA	NA	NA	-2819	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.035000	0.547264	
mm_10304.1	chr2	11171798	11171998	+	1	NA	NA	NA	-484	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.020000	0.393035	
mm_90333.1	chr10	127078955	127079155	+	1	NA	NA	NA	148	NM_001033263	216439	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.045000	0.646766	
mm_18481.1	chr2	62573842	62574042	-	1	NA	NA	NA	79	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.030000	0.462687	
mm_75045.1	chr8	32820070	32820270	-	1	NA	NA	NA	129856	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding	0.000000	0.432836	
mm_77007.1	chr8	107505618	107505818	-	1	NA	NA	NA	-45526	NR_029553	387158		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0.000000	0.522388	
mm_122697.1	chr14	52088725	52088925	-	1	NA	NA	NA	15203	NM_001170982	15381	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	0.000000	0.318408	
mm_31517.1	chr4	54297769	54297969	+	1	NA	NA	NA	471824	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.005000	0.402985	7(TCTTTTATATAC,+,0.00)
mm_85703.1	chr9	108110742	108110942	-	1	NA	NA	NA	-16362	NM_146226	235606	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0.040000	0.606965	
mm_96780.1	chr11	69940493	69940693	+	1	NA	NA	NA	4265	NM_001347634	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.010000	0.587065	
mm_58865.1	chr7	16921957	16922157	+	1	NA	NA	NA	1975	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.000000	0.587065	
mm_128877.1	chr15	73052141	73052341	-	1	NA	NA	NA	3571	NM_029640	76510	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.040000	0.562189	
mm_1600.1	chr1	74375494	74375694	+	1	NA	NA	NA	391	NM_013612	18173	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.020000	0.572139	
mm_57939.1	chr6	134792278	134792478	-	1	NA	NA	NA	250	NM_130447	70686	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	0.120000	0.656716	
mm_124634.1	chr15	4069215	4069415	+	1	NA	NA	NA	-41909	NR_028266	414066	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	0.010000	0.393035	
mm_68285.1	chr7	105633338	105633538	-	1	NA	NA	NA	133	NM_018880	55992	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	0.135000	0.781095	
mm_139932.1	chr17	71070555	71070755	+	1	NA	NA	NA	51098	NM_001083934	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.000000	0.402985	
mm_171579.1	chr4	147461030	147461230	+	1	NA	NA	NA	-92147	NM_001014397	433804	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154|OTTMUSG00000010673	zinc finger protein 985	protein-coding	0.005000	0.502488	
mm_25479.1	chr3	108940017	108940217	+	1	NA	NA	NA	33	NM_025723	66715	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0.105000	0.681592	
mm_14577.1	chr2	135659466	135659666	+	1	NA	NA	NA	-76346	NR_015544	320684	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.160000	0.776119	
mm_4405.1	chr1	172475300	172475500	+	1	NA	NA	NA	40	NM_029612	98365	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	0.005000	0.517413	
mm_168403.1	chr11	30137204	30137404	-	1	NA	NA	NA	60953	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.030000	0.577114	
mm_21888.1	chr2	166155232	166155432	-	1	NA	NA	NA	-47	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.085000	0.616915	
mm_166701.1	chr6	115522005	115522205	+	1	NA	NA	NA	-22599	NM_199033	381802	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.000000	0.502488	
mm_144150.1	chr18	5591300	5591500	+	1	NA	NA	NA	-460	NM_011546	21417	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.125000	0.696517	
mm_156970.1	chrX	169997399	169997599	+	1	NA	NA	NA	-18582	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.080000	0.661692	
mm_1391.1	chr1	67123549	67123749	+	1	NA	NA	NA	622	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.343284	
mm_60488.1	chr7	44478501	44478701	+	1	NA	NA	NA	-5916	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.497512	
mm_138929.1	chr17	43801776	43801976	+	1	NA	NA	NA	25	NM_207649	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.120000	0.766169	
mm_158737.1	chrX	164076015	164076215	-	1	NA	NA	NA	20	NM_001308386	20438	Mm.37215	NM_009173	ENSMUSG00000040749	Siah1b	AA960570|Sinh1b|siah-1b	seven in absentia 1B	protein-coding	0.090000	0.646766	
mm_156578.1	chrX	152022947	152023147	+	1	NA	NA	NA	6619	NM_019710	24061	Mm.482095	NM_019710	ENSMUSG00000041133	Smc1a	5830426I24Rik|SMC-1A|Sb1.8|Smc1|Smc1alpha|Smc1l1|Smcb|mKIAA0178	structural maintenance of chromosomes 1A	protein-coding	0.010000	0.447761	
mm_40996.1	chr5	77349157	77349357	+	1	NA	NA	NA	38773	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.000000	0.283582	
mm_141447.1	chr17	29981638	29981838	-	1	NA	NA	NA	-23349	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.025000	0.537313	
mm_135394.1	chr16	44484902	44485102	-	1	NA	NA	NA	73127	NR_037242	100526478		NR_037242	ENSMUSG00000093046	Mir3081	mir-3081|mmu-mir-3081	microRNA 3081	ncRNA	0.040000	0.398010	
mm_167588.1	chr9	46240743	46240943	+	1	NA	NA	NA	-1	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.010000	0.592040	
mm_83239.1	chr9	42399616	42399816	-	1	NA	NA	NA	213	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.040000	0.417910	
mm_116511.1	chr13	45654584	45654784	-	1	NA	NA	NA	147240	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.000000	0.447761	
mm_106466.1	chr11	120070492	120070692	-	1	NA	NA	NA	16235	NM_009734	12009	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	0.040000	0.601990	
mm_42587.1	chr5	117356536	117356736	+	1	NA	NA	NA	-669	NM_021539	59043	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	0.020000	0.517413	
mm_146473.1	chr18	88994508	88994708	+	1	NA	NA	NA	22578	NR_105777	102466633		NR_105777	ENSMUSG00000098676	Mir6359	Gm27328|mmu-mir-6359	microRNA 6359	ncRNA	0.015000	0.492537	
mm_7120.1	chr1	90775638	90775838	-	1	NA	NA	NA	68233	NM_001243009	12835	Mm.7562	NM_009935	ENSMUSG00000048126	Col6a3	AI507288|Col6a-3	collagen, type VI, alpha 3	protein-coding	0.025000	0.601990	
mm_33497.1	chr4	130823697	130823897	+	1	NA	NA	NA	31260	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.010000	0.567164	
mm_31471.1	chr4	49632037	49632237	+	1	NA	NA	NA	77	NM_182999	109331	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0.075000	0.621891	
mm_49547.1	chr6	30509738	30509938	+	1	NA	NA	NA	-11	NM_027073	75647	Mm.46117	NM_027073	ENSMUSG00000029784	Ssmem1	1700016K02Rik|1700025E21Rik	serine-rich single-pass membrane protein 1	protein-coding	0.075000	0.616915	
mm_164926.1	chr18	78123271	78123471	-	1	NA	NA	NA	55	NM_001171010	108052	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0.030000	0.582090	7(GGGTATAAAAGG,-,0.00),63(CCGTTTAAAAGA,-,0.00)
mm_116387.1	chr13	41184197	41184397	-	1	NA	NA	NA	35865	NM_001311121	54326	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0.005000	0.452736	
mm_22261.1	chr2	178364786	178364986	-	1	NA	NA	NA	42772	NM_177191	320558	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding	0.000000	0.373134	
mm_15292.1	chr2	155381746	155381946	+	1	NA	NA	NA	-10	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.135000	0.696517	
mm_91742.1	chr10	49218876	49219076	-	1	NA	NA	NA	-123133	NR_046212	100418235	Mm.185993	NR_046212		C130030K03Rik	-	proteasome (prosome, macropain) subunit, alpha type 6 pseudogene	pseudo	0.000000	0.253731	-38(GGTTTTTTAAGC,-,0.00)
mm_172066.1	chr6	136530966	136531166	+	1	NA	NA	NA	12215	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.015000	0.398010	
mm_36495.1	chr4	83285055	83285255	-	1	NA	NA	NA	39034	NM_027238	69863	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.030000	0.557214	
mm_102994.1	chr11	69686793	69686993	-	1	NA	NA	NA	-1339	NM_023517	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.025000	0.597015	
mm_139757.1	chr17	64332312	64332512	+	1	NA	NA	NA	-529	NM_001025309	224938	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja 2, RING-H2 motif containing	protein-coding	0.030000	0.532338	
mm_87551.1	chr10	54074417	54074617	+	1	NA	NA	NA	1279	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.040000	0.592040	
mm_2712.1	chr1	128141825	128142025	+	1	NA	NA	NA	38619	NM_181750	226412	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	0.000000	0.442786	
mm_65297.1	chr7	24545903	24546103	-	1	NA	NA	NA	2	NM_001037143	641361	Mm.333661	NM_001037143	ENSMUSG00000011632	Pinlyp	2310033E01Rik	phospholipase A2 inhibitor and LY6/PLAUR domain containing	protein-coding	0.010000	0.552239	-34(CTTCTTATAAGG,-,0.00),-32(TCTTATAAGGGC,+,0.00)
mm_59698.1	chr7	28597093	28597293	+	1	NA	NA	NA	991	NM_027470	70584	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 protein (Cdc42/Rac)-activated kinase 4	protein-coding	0.055000	0.532338	
mm_152522.1	chr19	11304379	11304579	-	1	NA	NA	NA	-20666	NM_183190	269063	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	0.005000	0.343284	
mm_137239.1	chr17	24470079	24470279	+	1	NA	NA	NA	-294	NM_025954	67078	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	0.080000	0.621891	
mm_53218.1	chr6	126854278	126854478	+	1	NA	NA	NA	1280	NM_009650	11642	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	0.005000	0.457711	
mm_48356.1	chr5	139372128	139372328	-	1	NA	NA	NA	-2483	NR_029768	723898		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0.125000	0.711443	
mm_65262.1	chr7	19921013	19921213	-	1	NA	NA	NA	30	NM_027514	52118	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.070000	0.616915	
mm_9664.1	chr1	177796568	177796768	-	1	NA	NA	NA	-159	NM_007422	11566	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.120000	0.766169	
mm_79500.1	chr9	57158297	57158497	+	1	NA	NA	NA	-98	NM_025417	66199	Mm.41687	NM_025417	ENSMUSG00000032299	Commd4	1110039H05Rik	COMM domain containing 4	protein-coding	0.025000	0.482587	
mm_33543.1	chr4	130934487	130934687	+	1	NA	NA	NA	-9798	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.005000	0.601990	
mm_139229.1	chr17	47730657	47730857	+	1	NA	NA	NA	3915	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.035000	0.597015	
mm_10690.1	chr2	22622257	22622457	+	1	NA	NA	NA	30	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.060000	0.587065	
mm_61314.1	chr7	68102201	68102401	+	1	NA	NA	NA	150044	NM_010513	16001	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.025000	0.338308	11(TGCTTTAAATGA,-,0.00)
mm_83917.1	chr9	56418846	56419046	-	1	NA	NA	NA	100	NM_025812	66867	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0.025000	0.542289	
mm_51190.1	chr6	71199780	71199980	+	1	NA	NA	NA	-8	NM_017399	14080	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0.015000	0.492537	
mm_91569.1	chr10	40072894	40073094	-	1	NA	NA	NA	-47726	NM_144821	215929	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.020000	0.402985	
mm_89219.1	chr10	86779001	86779201	+	1	NA	NA	NA	96	NM_175331	103466	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.135000	0.751244	
mm_55805.1	chr6	82883761	82883961	-	1	NA	NA	NA	-2008	NR_040520	69652	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	0.015000	0.472637	-35(GGTTTTATAAAG,-,0.00),-33(TTTTATAAAGGC,+,0.00)
mm_153370.1	chr19	40293320	40293520	-	1	NA	NA	NA	-21804	NM_016861	54132	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	0.020000	0.527363	
mm_113958.1	chr13	51157080	51157280	+	1	NA	NA	NA	-13845	NM_029173	75124	Mm.179243	NM_029173	ENSMUSG00000021396	Nxnl2	4930519N16Rik|Rdcvf2	nucleoredoxin-like 2	protein-coding	0.000000	0.368159	
mm_133097.1	chr16	64851936	64852136	+	1	NA	NA	NA	-49	NM_178647	106143	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.155000	0.751244	
mm_64864.1	chr7	13038217	13038417	-	1	NA	NA	NA	-42	NM_001168469	22192	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0.090000	0.606965	
mm_28396.1	chr3	90052392	90052592	-	1	NA	NA	NA	-17	NM_001165987	74383	Mm.25610	NM_028475	ENSMUSG00000042520	Ubap2l	3110083O19Rik|4932431F02Rik|A430103N23Rik|C77168|Nice-4|mKIAA0144	ubiquitin-associated protein 2-like	protein-coding	0.115000	0.706468	
mm_21503.1	chr2	163517519	163517719	-	1	NA	NA	NA	10762	NM_001312907	15378	Mm.202383	NM_008261	ENSMUSG00000017950	Hnf4a	HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14	hepatic nuclear factor 4, alpha	protein-coding	0.035000	0.517413	
mm_18049.1	chr2	39185453	39185653	-	1	NA	NA	NA	5177	NM_178778	320271	Mm.204836	NM_178778	ENSMUSG00000035236	Scai	9330112M16|A930041I02Rik|AI662729	suppressor of cancer cell invasion	protein-coding	0.005000	0.333333	
mm_104685.1	chr11	97718344	97718544	-	1	NA	NA	NA	15010	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	0.015000	0.502488	
mm_133165.1	chr16	70499295	70499495	+	1	NA	NA	NA	-117030	NR_040474	52645	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0.000000	0.308458	-12(TTCCTTAAAGGG,-,0.00),-10(CCTTAAAGGGCT,+,0.00)
mm_34370.1	chr4	144893118	144893318	+	1	NA	NA	NA	81	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.030000	0.447761	
mm_21980.1	chr2	167421359	167421559	-	1	NA	NA	NA	-251	NM_148929	77031	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.065000	0.567164	
mm_145470.1	chr18	60300874	60301074	+	1	NA	NA	NA	7594	NM_001101475	240328	Mm.329461	NM_001101475	ENSMUSG00000090942	F830016B08Rik	Ifgga4	RIKEN cDNA F830016B08 gene	protein-coding	0.005000	0.358209	
mm_163010.1	chr11	40673794	40673994	-	1	NA	NA	NA	18788	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.025000	0.492537	
mm_120537.1	chr14	67234503	67234703	+	1	NA	NA	NA	1311	NM_001276387	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.095000	0.691542	-41(CCTTATCGGGCC,+,0.00)
mm_140781.1	chr17	17883869	17884069	-	1	NA	NA	NA	-30	NM_013521	14293	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0.000000	0.427861	
mm_34804.1	chr4	154864405	154864605	+	1	NA	NA	NA	-5080	NM_013783	27390	Mm.116944	NM_013783	ENSMUSG00000058183	Mmel1	Mell1|NEP2|NEPII|Nl1|SEP	membrane metallo-endopeptidase-like 1	protein-coding	0.035000	0.527363	
mm_119437.1	chr14	46387406	46387606	+	1	NA	NA	NA	3163	NM_001316360	12159	Mm.6813	NM_007554	ENSMUSG00000021835	Bmp4	Bmp-4|Bmp2b|Bmp2b-1|Bmp2b1	bone morphogenetic protein 4	protein-coding	0.105000	0.721393	
mm_18582.1	chr2	66210082	66210282	-	1	NA	NA	NA	46435	NM_001047604	73668	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	0.025000	0.368159	
mm_31227.1	chr4	44167357	44167557	+	1	NA	NA	NA	81	NM_175201	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.110000	0.671642	
mm_96842.1	chr11	70029725	70029925	+	1	NA	NA	NA	11220	NM_007864	13385	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs, large homolog 4 (Drosophila)	protein-coding	0.015000	0.517413	
mm_132192.1	chr16	32431199	32431399	+	1	NA	NA	NA	69	NM_001163160	13026	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	0.075000	0.616915	
mm_170303.1	chr18	34631121	34631321	+	1	NA	NA	NA	6188	NM_001166406	19348	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	0.025000	0.542289	
mm_163592.1	chr13	41381340	41381540	-	1	NA	NA	NA	-22439	NM_017464	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.005000	0.462687	
mm_74501.1	chr8	8021060	8021260	-	1	NA	NA	NA	639613	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.030000	0.407960	
mm_81517.1	chr9	110045335	110045535	+	1	NA	NA	NA	-6586	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.015000	0.378109	
mm_54742.1	chr6	41030851	41031051	-	1	NA	NA	NA	4558	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.507463	
mm_54797.1	chr6	41680739	41680939	-	1	NA	NA	NA	-116	NM_001007572	194352	Mm.135734	NM_001007572	ENSMUSG00000036899	Trpv5	CAT2|D630033B11|ECAC1	transient receptor potential cation channel, subfamily V, member 5	protein-coding	0.005000	0.497512	
mm_11260.1	chr2	29965222	29965422	+	1	NA	NA	NA	-238	NM_001177668	20740	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	0.100000	0.716418	
mm_140893.1	chr17	24025136	24025336	-	1	NA	NA	NA	-13007	NM_175440	213171	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	0.015000	0.467662	
mm_130774.1	chr15	101463664	101463864	-	1	NA	NA	NA	1	NM_001166157	64818	Mm.347934	NM_001166157	ENSMUSG00000067615	Krt81	AA589625|Krt2-19	keratin 81	protein-coding	0.030000	0.557214	-32(CCATAAATAGGA,+,0.00)
mm_70767.1	chr8	21946656	21946856	+	1	NA	NA	NA	-6	NM_139223	246083	Mm.219548	NM_139223	ENSMUSG00000044222	Defb13	BD-13	defensin beta 13	protein-coding	0.010000	0.462687	
mm_39522.1	chr5	21258050	21258250	+	1	NA	NA	NA	71883	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.010000	0.417910	
mm_19365.1	chr2	91168526	91168726	-	1	NA	NA	NA	10695	NM_001177720	228355	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0.005000	0.358209	
mm_171970.1	chr5	88167742	88167942	-	1	NA	NA	NA	81286	NM_001252680	20600	Mm.1397	NM_021289	ENSMUSG00000029281	Smr2	MSG2|Vcs2	submaxillary gland androgen regulated protein 2	protein-coding	0.035000	0.502488	
mm_4417.1	chr1	172499908	172500108	+	1	NA	NA	NA	-238	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.030000	0.507463	
mm_77191.1	chr8	111933689	111933889	-	1	NA	NA	NA	2	NM_001033321	234740	Mm.87513	NM_001033321	ENSMUSG00000031951	Tmem231	4932417I16Rik|Gm178	transmembrane protein 231	protein-coding	0.085000	0.651741	
mm_77343.1	chr8	119571986	119572186	-	1	NA	NA	NA	3114	NM_175185	72552	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	0.005000	0.447761	
mm_160219.1	chr7	100293815	100294015	+	1	NA	NA	NA	8395	NM_177161	320452	Mm.150294	NM_177161	ENSMUSG00000051048	P4ha3	D930031A02Rik	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III	protein-coding	0.040000	0.557214	
mm_75973.1	chr8	72135649	72135849	-	1	NA	NA	NA	457	NM_001001491	326618	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	0.110000	0.701493	
mm_107076.1	chr12	16964950	16965150	+	1	NA	NA	NA	35068	NM_172574	217430	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	0.010000	0.407960	-12(GGTCTTTAAAGC,-,0.00),-11(GTCTTTAAAGCA,+,0.00)
mm_138648.1	chr17	35866839	35867039	+	1	NA	NA	NA	324	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.030000	0.552239	
mm_96742.1	chr11	69846281	69846481	+	1	NA	NA	NA	9	NM_001168497	70310	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	0.075000	0.671642	
mm_89139.1	chr10	85829292	85829492	+	1	NA	NA	NA	-42439	NM_133993	103136	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	0.095000	0.621891	
mm_103687.1	chr11	79483799	79483999	-	1	NA	NA	NA	132	NR_045305	104522	Mm.436987	NR_045305	ENSMUSG00000091523	AU040972	AU040954	expressed sequence AU040972	ncRNA	0.015000	0.363184	-33(TTTTTTAAAAGG,-,0.00)
mm_20167.1	chr2	122298628	122298828	-	1	NA	NA	NA	-172	NM_025777	66811	Mm.171333	NM_025777	ENSMUSG00000027225	Duoxa2	9030623N16Rik|Nip2	dual oxidase maturation factor 2	protein-coding	0.060000	0.557214	
mm_4204.1	chr1	171231081	171231281	+	1	NA	NA	NA	3168	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.020000	0.552239	
mm_94175.1	chr10	128891595	128891795	-	1	NA	NA	NA	23	NM_010272	14561	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	0.105000	0.805970	
mm_10341.1	chr2	11653493	11653693	+	1	NA	NA	NA	10801	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.005000	0.512438	
mm_23613.1	chr3	65528364	65528564	+	1	NA	NA	NA	17	NM_178892	99929	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	0.125000	0.711443	
mm_63885.1	chr7	137437486	137437686	+	1	NA	NA	NA	-62	NM_023140	30926	Mm.267692	NM_023140	ENSMUSG00000031068	Glrx3	PICOT|Txnl2	glutaredoxin 3	protein-coding	0.100000	0.706468	
mm_133672.1	chr16	92083617	92083817	+	1	NA	NA	NA	25381	NM_080456	121022	Mm.217354	NM_080456	ENSMUSG00000039680	Mrps6	AW046321	mitochondrial ribosomal protein S6	protein-coding	0.015000	0.393035	
mm_1297.1	chr1	64532740	64532940	+	1	NA	NA	NA	36	NM_001037726	12912	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.120000	0.731343	
mm_45686.1	chr5	77355560	77355760	-	1	NA	NA	NA	45176	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.015000	0.512438	
mm_24630.1	chr3	94046622	94046822	+	1	NA	NA	NA	8163	NM_001163730	668359	Mm.80593	NM_001163730	ENSMUSG00000094328	Gm9125	EG668359	predicted gene 9125	protein-coding	0.010000	0.487562	
mm_15641.1	chr2	163059080	163059280	+	1	NA	NA	NA	4545	NM_008652	17865	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	0.020000	0.482587	
mm_134980.1	chr16	32079134	32079334	-	1	NA	NA	NA	108	NM_177326	224105	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 protein (Cdc42/Rac)-activated kinase 2	protein-coding	0.130000	0.766169	
mm_92182.1	chr10	67912553	67912753	-	1	NA	NA	NA	9	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0.040000	0.676617	
mm_130653.1	chr15	100636897	100637097	-	1	NA	NA	NA	-57	NM_001033872	207818	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.125000	0.761194	
mm_167436.1	chr8	119666238	119666438	+	1	NA	NA	NA	-27	NM_023395	67866	Mm.87599	NM_023395	ENSMUSG00000023336	Wfdc1	2310058A03Rik|ps20	WAP four-disulfide core domain 1	protein-coding	0.005000	0.587065	
mm_139802.1	chr17	66123461	66123661	+	1	NA	NA	NA	41	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.110000	0.651741	
mm_137206.1	chr17	24035229	24035429	+	1	NA	NA	NA	-2914	NM_175440	213171	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	0.020000	0.517413	-35(GACCATATAAGG,-,0.00)
mm_136157.1	chr16	88225339	88225539	-	1	NA	NA	NA	64819	NM_146072	14805	Mm.5134	NM_010348	ENSMUSG00000022935	Grik1	A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1	glutamate receptor, ionotropic, kainate 1	protein-coding	0.015000	0.477612	83(GCATTTAAAGGT,+,0.00)
mm_26015.1	chr3	135438020	135438220	+	1	NA	NA	NA	545	NR_030689	319587	Mm.358971	NR_030689	ENSMUSG00000097032	4930539J05Rik	8030475D13Rik	RIKEN cDNA 4930539J05 gene	ncRNA	0.110000	0.721393	
mm_140018.1	chr17	73804792	73804992	+	1	NA	NA	NA	51	NM_020578	57440	Mm.18526	NM_020578	ENSMUSG00000024065	Ehd3	Ehd2	EH-domain containing 3	protein-coding	0.105000	0.666667	-31(GCATTTAAACGC,+,0.00)
mm_83617.1	chr9	48793867	48794067	-	1	NA	NA	NA	41978	NM_001033324	235320	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0.005000	0.422886	-7(TTTTTTAAAGAG,+,0.00)
mm_151207.1	chr19	53600306	53600506	+	1	NA	NA	NA	10	NM_007790	13006	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.130000	0.721393	
mm_171802.1	chr5	124540695	124540895	+	1	NA	NA	NA	4	NM_019770	56334	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	0.155000	0.786070	
mm_6274.1	chr1	69681004	69681204	-	1	NA	NA	NA	4856	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.015000	0.398010	
mm_41517.1	chr5	92387822	92388022	+	1	NA	NA	NA	-212	NM_181728	109979	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0.005000	0.417910	58(CCTCTTATAGTC,+,0.00)
mm_71056.1	chr8	33732088	33732288	+	1	NA	NA	NA	121	NM_026584	68153	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	0.160000	0.776119	
mm_49138.1	chr6	8949721	8949921	+	1	NA	NA	NA	-198	NM_008751	18231	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.065000	0.646766	
mm_54446.1	chr6	34713068	34713268	-	1	NA	NA	NA	3724	NM_145575	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.000000	0.447761	
mm_46287.1	chr5	100217844	100218044	-	1	NA	NA	NA	7252	NR_040679	69571	Mm.396412	NR_040679	ENSMUSG00000100157	2310034O05Rik	-	RIKEN cDNA 2310034O05 gene	ncRNA	0.010000	0.482587	
mm_135822.1	chr16	58499256	58499456	-	1	NA	NA	NA	23956	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.000000	0.457711	
mm_132366.1	chr16	34784803	34785003	+	1	NA	NA	NA	-47	NM_139300	107589	Mm.33360	NM_139300	ENSMUSG00000022836	Mylk	9530072E15Rik|A930019C19Rik|AW489456|KRP|MLCK108|MLCK210|Mlck|nmMlck|smMLCK	myosin, light polypeptide kinase	protein-coding	0.020000	0.572139	
mm_110712.1	chr12	69372392	69372592	-	1	NA	NA	NA	342	NM_007481	11845	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.170000	0.786070	
mm_99935.1	chr11	111026783	111026983	+	1	NA	NA	NA	3023	NM_001252208	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.010000	0.393035	4(AGCTTTATAAAC,-,0.00),6(CTTTATAAACTG,+,0.00)
mm_75507.1	chr8	54412209	54412409	-	1	NA	NA	NA	117689	NM_029701	76687	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.010000	0.338308	
mm_56201.1	chr6	88874944	88875144	-	1	NA	NA	NA	0	NM_001347327	319655	Mm.302613	NM_176973	ENSMUSG00000033152	Podxl2	D130074J02Rik|PODLX2	podocalyxin-like 2	protein-coding	0.185000	0.805970	
mm_51308.1	chr6	72313605	72313805	+	1	NA	NA	NA	9095	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.015000	0.557214	
mm_46019.1	chr5	90904139	90904339	-	1	NA	NA	NA	340	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.025000	0.572139	
mm_145594.1	chr18	60986027	60986227	+	1	NA	NA	NA	22573	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.045000	0.557214	
mm_163385.1	chr12	54141836	54142036	-	1	NA	NA	NA	61938	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	0.005000	0.477612	
mm_158664.1	chrX	157492112	157492312	-	1	NA	NA	NA	-166	NM_009214	20603	Mm.18652	NM_009214	ENSMUSG00000071708	Sms	AI427066|Gy|SPMSY|SpmST|gyro	spermine synthase	protein-coding	0.090000	0.676617	72(TCCTCTAAGAGG,-,0.00),73(CCTCTAAGAGGC,+,0.00)
mm_157779.1	chrX	73786794	73786994	-	1	NA	NA	NA	3	NM_008323	15929	Mm.14825	NM_008323	ENSMUSG00000002010	Idh3g	-	isocitrate dehydrogenase 3 (NAD+), gamma	protein-coding	0.075000	0.552239	
mm_63995.1	chr7	140115719	140115919	+	1	NA	NA	NA	604	NM_053119	93747	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	0.015000	0.457711	-33(TTCTCTTAAAGC,-,0.00)
mm_59811.1	chr7	29170224	29170424	+	1	NA	NA	NA	-66	NM_182696	243897	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	0.070000	0.636816	
mm_58682.1	chr7	12512431	12512631	+	1	NA	NA	NA	-20	NM_028434	73090	Mm.84622	NM_028434	ENSMUSG00000030385	2900092C05Rik	-	RIKEN cDNA 2900092C05 gene	protein-coding	0.005000	0.422886	
mm_3211.1	chr1	135836288	135836488	+	1	NA	NA	NA	54	NM_001130179	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.010000	0.611940	
mm_72382.1	chr8	81558870	81559070	+	1	NA	NA	NA	216408	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.005000	0.477612	
mm_60630.1	chr7	44748893	44749093	+	1	NA	NA	NA	364	NM_133945	101568	Mm.28816	NM_133945	ENSMUSG00000002205	Vrk3	AI428238	vaccinia related kinase 3	protein-coding	0.035000	0.517413	
mm_11190.1	chr2	29122547	29122747	+	1	NA	NA	NA	-2345	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.005000	0.517413	
mm_89557.1	chr10	95217923	95218123	+	1	NA	NA	NA	-72198	NR_131146	628062		NR_131146		Gm29684	-	predicted gene, 29684	ncRNA	0.025000	0.552239	14(CCTCAAATGGGC,+,0.00)
mm_106490.1	chr11	120237222	120237422	-	1	NA	NA	NA	4375	NM_198423	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.115000	0.676617	
mm_70250.1	chr8	3482392	3482592	+	1	NA	NA	NA	-10646	NM_080461	140482	Mm.299073	NM_080461	ENSMUSG00000047264	Zfp358	Zfend	zinc finger protein 358	protein-coding	0.035000	0.402985	70(GCTTAAATACCC,+,0.00)
mm_12045.1	chr2	59160709	59160909	+	1	NA	NA	NA	-41	NM_026361	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.120000	0.766169	
mm_153590.1	chr19	43524421	43524621	-	1	NA	NA	NA	84	NM_010324	14718	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.115000	0.661692	
mm_27715.1	chr3	68692109	68692309	-	1	NA	NA	NA	785	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.020000	0.452736	
mm_81391.1	chr9	108985072	108985272	+	1	NA	NA	NA	-991	NM_145077	171530	Mm.388865	NM_145077	ENSMUSG00000049699	Ucn2	Ucn II|Ucn-2|ucn-II	urocortin 2	protein-coding	0.020000	0.597015	
mm_74991.1	chr8	27174537	27174737	-	1	NA	NA	NA	9	NM_029423	75767	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.100000	0.756219	
mm_130469.1	chr15	98662791	98662991	-	1	NA	NA	NA	-2	NM_001080981	74351	Mm.45725	NM_001080981	ENSMUSG00000003360	Ddx23	3110082M05Rik|4921506D17Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	protein-coding	0.110000	0.651741	
mm_34685.1	chr4	151862150	151862350	+	1	NA	NA	NA	-482	NM_001195565	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.110000	0.721393	
mm_674.1	chr1	40465891	40466091	+	1	NA	NA	NA	-15	NM_008365	16182	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0.025000	0.517413	
mm_14598.1	chr2	136058182	136058382	+	1	NA	NA	NA	355	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.065000	0.587065	
mm_115166.1	chr13	107955480	107955680	+	1	NA	NA	NA	-65516	NM_145456	67263	Mm.490418	NM_145456	ENSMUSG00000032846	Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.030000	0.681592	
mm_56959.1	chr6	120037871	120038071	-	1	NA	NA	NA	684	NM_001199083	232341	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0.110000	0.701493	
mm_113310.1	chr13	30753389	30753589	+	1	NA	NA	NA	4256	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.015000	0.522388	
mm_10020.1	chr1	192074379	192074579	-	1	NA	NA	NA	18120	NM_011633	22033	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.025000	0.537313	
mm_55857.1	chr6	83455363	83455563	-	1	NA	NA	NA	929	NM_001347313	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.015000	0.557214	
mm_97392.1	chr11	77802284	77802484	+	1	NA	NA	NA	1086	NM_001291215	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.020000	0.577114	
mm_147533.1	chr18	53249585	53249785	-	1	NA	NA	NA	4023	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.015000	0.542289	
mm_87844.1	chr10	60749135	60749335	+	1	NA	NA	NA	3547	NM_023596	71279	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.010000	0.522388	-34(GGCTTTATAAGA,-,0.00)
mm_326.1	chr1	24685771	24685971	+	1	NA	NA	NA	6953	NM_001310483	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.010000	0.527363	
mm_80371.1	chr9	75347659	75347859	+	1	NA	NA	NA	1	NM_013479	12049	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	0.020000	0.542289	
mm_22121.1	chr2	170193359	170193559	-	1	NA	NA	NA	-50784	NM_001159683	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.035000	0.497512	
mm_99295.1	chr11	101330783	101330983	+	1	NA	NA	NA	277	NM_009675	11754	Mm.67281	NM_009675	ENSMUSG00000019326	Aoc3	SSAO|VAP1	amine oxidase, copper containing 3	protein-coding	0.015000	0.572139	
mm_135220.1	chr16	36769997	36770197	-	1	NA	NA	NA	14865	NM_001145899	57738	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.020000	0.452736	
mm_46688.1	chr5	109844938	109845138	-	1	NA	NA	NA	-10896	NR_027964	667213	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213|ENSMUSG00000072761	zinc finger protein pseudogene	pseudo	0.040000	0.572139	
mm_158845.1	chrX	169779535	169779735	-	1	NA	NA	NA	0	NR_003635	66747	Mm.34441	NM_025743	ENSMUSG00000055357	4933400A11Rik	-	capping protein (actin filament) muscle Z-line, alpha 1 pseudogene	pseudo	0.010000	0.482587	
mm_4222.1	chr1	171331249	171331449	+	1	NA	NA	NA	2204	NM_011615	21945	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	0.015000	0.482587	
mm_134262.1	chr16	13750737	13750937	-	1	NA	NA	NA	-20353	NM_011987	26565	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	0.055000	0.572139	10(TTCTATAAGAGC,-,0.00)
mm_69304.1	chr7	128376177	128376377	-	1	NA	NA	NA	41895	NM_026418	67865	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.020000	0.587065	
mm_61966.1	chr7	90426426	90426626	+	1	NA	NA	NA	214	NM_027298	70054	Mm.307198	NM_027298	ENSMUSG00000044362	Ccdc89	1700019B01Rik|AU022100|BOIP	coiled-coil domain containing 89	protein-coding	0.040000	0.547264	
mm_132151.1	chr16	32108770	32108970	+	1	NA	NA	NA	9068	NM_025892	66994	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0.005000	0.442786	
mm_24041.1	chr3	87846747	87846947	+	1	NA	NA	NA	92	NM_021309	27371	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	0.000000	0.487562	
mm_40256.1	chr5	38228004	38228204	+	1	NA	NA	NA	7622	NM_025281	17089	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	0.015000	0.507463	
mm_111776.1	chr12	104152962	104153162	-	1	NA	NA	NA	810	NM_008458	16625	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	0.000000	0.512438	
mm_125511.1	chr15	55591657	55591857	+	1	NA	NA	NA	34349	NM_001168250	105837	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0.005000	0.562189	
mm_25702.1	chr3	122419700	122419900	+	1	NA	NA	NA	20	NM_013867	29815	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0.065000	0.542289	
mm_52233.1	chr6	104345716	104345916	+	1	NA	NA	NA	-147228	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding	0.000000	0.383085	
mm_117003.1	chr13	57695704	57695904	-	1	NA	NA	NA	212528	NM_009262	20745	Mm.379020	NM_009262	ENSMUSG00000056222	Spock1	Spock|Ticn1|testican	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	protein-coding	0.000000	0.268657	
mm_161593.1	chr16	35938394	35938594	+	1	NA	NA	NA	24	NM_030253	80285	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.040000	0.567164	
mm_5895.1	chr1	54484730	54484930	-	1	NA	NA	NA	-45804	NM_001033194	98488	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0.015000	0.437811	-43(TTGTTTAAAAAG,-,0.00)
mm_168762.1	chr1	21201367	21201567	-	1	NA	NA	NA	-17108	NM_001290679	75712	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	0.055000	0.646766	
mm_71396.1	chr8	46163672	46163872	+	1	NA	NA	NA	-5784	NM_025747	66756	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430|mKIAA1430	cilia and flagella associated protein 97	protein-coding	0.150000	0.731343	
mm_38382.1	chr4	138757492	138757692	-	1	NA	NA	NA	6	NM_012045	26971	Mm.331989	NM_012045	ENSMUSG00000028749	Pla2g2f	-	phospholipase A2, group IIF	protein-coding	0.025000	0.582090	
mm_166943.1	chr7	43462225	43462425	+	1	NA	NA	NA	-908	NM_001290316	75690	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.010000	0.517413	
mm_11107.1	chr2	28192918	28193118	+	1	NA	NA	NA	-75	NM_001038613	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.140000	0.781095	
mm_19458.1	chr2	92388916	92389116	-	1	NA	NA	NA	-1570	NR_105966	102466783		NR_105966	ENSMUSG00000099093	Mir7000	Gm27338|mmu-mir-7000	microRNA 7000	ncRNA	0.065000	0.686567	
mm_172082.1	chr6	145932863	145933063	-	1	NA	NA	NA	1090	NM_001310837	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.055000	0.542289	
mm_49133.1	chr6	8948514	8948714	+	1	NA	NA	NA	-1405	NM_008751	18231	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.110000	0.646766	
mm_88822.1	chr10	80803553	80803753	+	1	NA	NA	NA	-1595	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.035000	0.542289	
mm_51859.1	chr6	90466221	90466421	+	1	NA	NA	NA	3695	NM_023184	66277	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.015000	0.572139	
mm_19721.1	chr2	104430683	104430883	-	1	NA	NA	NA	-1843	NR_035432	100316678		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	0.025000	0.577114	
mm_149747.1	chr19	22514392	22514592	+	1	NA	NA	NA	66284	NM_177341	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.015000	0.462687	
mm_49608.1	chr6	30747044	30747244	+	1	NA	NA	NA	5845	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.025000	0.492537	-4(GCATATATGGGC,+,0.00)
mm_164626.1	chr17	31557911	31558111	-	1	NA	NA	NA	-6762	NR_027493	18771	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.005000	0.497512	-30(CTTTTAATATGC,+,0.00),49(TCTTTTAAACCT,+,0.00)
mm_92330.1	chr10	75781323	75781523	-	1	NA	NA	NA	-1	NM_001346523	103140	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding	0.010000	0.492537	
mm_66006.1	chr7	30562910	30563110	-	1	NA	NA	NA	174	NM_025498	66340	Mm.86557	NM_025498	ENSMUSG00000036835	Psenen	1700023M09Rik|Pen-2	presenilin enhancer gamma secretase subunit	protein-coding	0.065000	0.542289	
mm_150872.1	chr19	45055266	45055466	+	1	NA	NA	NA	7790	NM_001178013	94280	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.005000	0.532338	40(GCTTTTAGAGAC,+,0.00)
mm_128538.1	chr15	54919924	54920124	-	1	NA	NA	NA	122	NM_015744	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.035000	0.532338	
mm_68395.1	chr7	109534763	109534963	-	1	NA	NA	NA	14731	NR_028079	100302499	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	0.005000	0.547264	
mm_9586.1	chr1	174031684	174031884	-	1	NA	NA	NA	-29	NM_172648	226695	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	0.005000	0.467662	36(TCATTTATACCC,+,0.00)
mm_8833.1	chr1	162571380	162571580	-	1	NA	NA	NA	652	NM_001347125	53330	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e	vesicle-associated membrane protein 4	protein-coding	0.065000	0.462687	
mm_152400.1	chr19	10556137	10556337	-	1	NA	NA	NA	1	NM_026798	68642	Mm.31236	NM_026798	ENSMUSG00000024667	Tmem216	1110017C22Rik|2810441K11Rik|4921533J23Rik|A930021F15Rik|AI482550	transmembrane protein 216	protein-coding	0.040000	0.472637	
mm_33090.1	chr4	124695752	124695952	+	1	NA	NA	NA	-2298	NM_026031	67205	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11l	2700082D03Rik|CGI-94|Cgi94|Utp11	UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	protein-coding	0.030000	0.472637	
mm_21846.1	chr2	165852458	165852658	-	1	NA	NA	NA	5615	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.025000	0.487562	
mm_106045.1	chr11	116079676	116079876	-	1	NA	NA	NA	-1815	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.035000	0.582090	
mm_67705.1	chr7	89940948	89941148	-	1	NA	NA	NA	156	NM_001291289	67669	Mm.28679	NM_026304	ENSMUSG00000062797	Hikeshi	0610007P06Rik|1110002N09Rik|l(7)6Rn|l7Rn6	heat shock protein nuclear import factor	protein-coding	0.055000	0.611940	
mm_159369.1	chr3	88629315	88629515	+	1	NA	NA	NA	8021	NM_001198912	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.040000	0.587065	
mm_50173.1	chr6	41558437	41558637	+	1	NA	NA	NA	36761	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.502488	
mm_95435.1	chr11	50213198	50213398	+	1	NA	NA	NA	-2478	NM_011018	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.020000	0.582090	
mm_37606.1	chr4	126753306	126753506	-	1	NA	NA	NA	23	NM_011986	26562	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	0.085000	0.686567	
mm_36043.1	chr4	57262494	57262694	-	1	NA	NA	NA	39243	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.015000	0.417910	43(TTGTTTAAAGGG,-,0.00)
mm_166291.1	chr5	101703497	101703697	+	1	NA	NA	NA	-38886	NM_144955	18096	Mm.193072	NM_144955	ENSMUSG00000035187	Nkx6-1	NKX6A|Nkx6.1	NK6 homeobox 1	protein-coding	0.040000	0.512438	-86(TCCTTTAAAAGG,-,0.00),-85(CCTTTAAAAGGC,+,0.00)
mm_120731.1	chr14	73143482	73143682	+	1	NA	NA	NA	797	NR_033185	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.085000	0.671642	
mm_115295.1	chr13	111982943	111983143	+	1	NA	NA	NA	115107	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.005000	0.482587	49(GCCTTTTTAAAA,-,0.00),51(CTTTTTAAAATC,+,0.00)
mm_74149.1	chr8	123332608	123332808	+	1	NA	NA	NA	-5	NM_172287	234857	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire homolog 2 (Drosophila)	protein-coding	0.170000	0.786070	
mm_166157.1	chr5	15577203	15577403	+	1	NA	NA	NA	356	NM_001310450	105242399		NM_001310450	ENSMUSG00000096878	LOC105242399	-	spermatogenesis associated glutamate (E)-rich protein-like	protein-coding	0.005000	0.487562	
mm_98091.1	chr11	86598683	86598883	+	1	NA	NA	NA	-14625	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.000000	0.487562	
mm_59699.1	chr7	28629825	28630025	+	1	NA	NA	NA	1090	NM_175319	101744	Mm.26022	NM_175319	ENSMUSG00000037469	Acp7	AU017076|C330005M16Rik|Papl	acid phosphatase 7, tartrate resistant	protein-coding	0.020000	0.572139	
mm_137694.1	chr17	28952379	28952579	+	1	NA	NA	NA	-737	NM_025888	66989	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	0.150000	0.776119	
mm_139233.1	chr17	47732302	47732502	+	1	NA	NA	NA	-4635	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.035000	0.547264	
mm_131247.1	chr16	10536758	10536958	+	1	NA	NA	NA	6196	NM_021428	58239	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0.010000	0.407960	46(AACTCTAAAAGG,-,0.00)
mm_15657.1	chr2	163204403	163204603	+	1	NA	NA	NA	-20951	NM_001098799	269389	Mm.207709	NM_001098799	ENSMUSG00000074607	Tox2	AI851523|AV026525|BI987407|Gcx1|RxHMG1	TOX high mobility group box family member 2	protein-coding	0.130000	0.721393	
mm_160851.1	chr11	54249795	54249995	-	1	NA	NA	NA	4	NM_009969	12981	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	0.010000	0.577114	24(GGCCTTTAAAGC,-,0.00),25(GCCTTTAAAGCA,+,0.00),26(CCTTTAAAGCAG,+,0.00)
mm_108344.1	chr12	80435103	80435303	+	1	NA	NA	NA	1398	NM_177267	320808	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	0.125000	0.741294	
mm_93331.1	chr10	99460131	99460331	-	1	NA	NA	NA	-148940	NR_038019	100504202	Mm.403801	NR_038019		Gm20110	-	predicted gene, 20110	ncRNA	0.015000	0.487562	
mm_170547.1	chr19	4037807	4038007	-	1	NA	NA	NA	5	NM_013541	14870	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	0.080000	0.646766	-50(CCCCTTATAAGG,-,0.00),-48(CCTTATAAGGCT,+,0.00)
mm_74339.1	chr8	127111417	127111617	+	1	NA	NA	NA	47461	NM_001309391	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.005000	0.363184	
mm_102373.1	chr11	58612469	58612669	-	1	NA	NA	NA	923	NM_144544	78354	Mm.58038	NM_144544	ENSMUSG00000037145	2210407C18Rik	Ep1	RIKEN cDNA 2210407C18 gene	protein-coding	0.015000	0.427861	-90(CCCTTTAAATGA,-,0.00),11(CCTCTTATAGCT,+,0.00)
mm_19628.1	chr2	102813619	102813819	-	1	NA	NA	NA	87946	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.005000	0.482587	79(CTCTTTATAGAC,+,0.00),81(CTTTATAGACTC,+,0.00)
mm_93484.1	chr10	111996538	111996738	-	1	NA	NA	NA	626	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.020000	0.422886	85(GTGTCTTAAGGG,-,0.00)
mm_90474.1	chr10	127866315	127866515	+	1	NA	NA	NA	-61	NM_145424	216454	Mm.214923	NM_145424	ENSMUSG00000074639	BC089597	CRAD-L	cDNA sequence BC089597	protein-coding	0.005000	0.467662	
mm_171063.1	chr3	110683082	110683282	-	1	NA	NA	NA	-432183	NR_024139	99890	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	0.020000	0.512438	
mm_161447.1	chr15	74540789	74540989	+	1	NA	NA	NA	24693	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0.040000	0.626866	
mm_36254.1	chr4	63410100	63410300	-	1	NA	NA	NA	-6755	NM_001045514	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.045000	0.592040	
mm_3879.1	chr1	161035066	161035266	+	1	NA	NA	NA	0	NR_002840	14455	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	0.055000	0.557214	-32(CCTTATATACTC,+,0.00)
mm_144926.1	chr18	37694274	37694474	+	1	NA	NA	NA	-127	NM_033588	93713	Mm.247203	NM_033588	ENSMUSG00000103567	Pcdhga5	-	protocadherin gamma subfamily A, 5	protein-coding	0.035000	0.487562	
mm_85749.1	chr9	108578611	108578811	-	1	NA	NA	NA	-41	NM_031392	83669	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	0.080000	0.641791	
mm_59940.1	chr7	30424322	30424522	+	1	NA	NA	NA	1118	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.015000	0.547264	62(GCCCCTAAAAAC,-,0.00)
mm_136535.1	chr16	97659433	97659633	-	1	NA	NA	NA	-48338	NM_015775	50528	Mm.276145	NM_015775	ENSMUSG00000000385	Tmprss2	D16Ertd61e	transmembrane protease, serine 2	protein-coding	0.005000	0.482587	
mm_155458.1	chrX	73502995	73503195	+	1	NA	NA	NA	9	NM_177236	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.105000	0.756219	
mm_63407.1	chr7	127333476	127333676	+	1	NA	NA	NA	11738	NM_146202	233890	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0.005000	0.547264	
mm_141414.1	chr17	29428868	29429068	-	1	NA	NA	NA	-62077	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.005000	0.482587	
mm_86394.1	chr9	123968450	123968650	-	1	NA	NA	NA	142	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.000000	0.467662	
mm_43754.1	chr5	140437220	140437420	+	1	NA	NA	NA	9981	NR_106005	102466792		NR_106005	ENSMUSG00000098319	Mir7038	Gm27955|mmu-mir-7038	microRNA 7038	ncRNA	0.020000	0.507463	
mm_91791.1	chr10	53360905	53361105	-	1	NA	NA	NA	18846	NM_001204983	100038725	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	ENSMUSG00000038594|Gm9766	centrosomal protein 85-like	protein-coding	0.000000	0.363184	
mm_90114.1	chr10	117277558	117277758	+	1	NA	NA	NA	4614	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.015000	0.517413	
mm_71666.1	chr8	60655454	60655654	+	1	NA	NA	NA	-3	NM_001177882	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	0.005000	0.447761	
mm_68145.1	chr7	102249268	102249468	-	1	NA	NA	NA	750	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.025000	0.452736	
mm_82357.1	chr9	14381408	14381608	-	1	NA	NA	NA	-266	NM_028013	71946	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0.015000	0.407960	
mm_36848.1	chr4	106730867	106731067	-	1	NA	NA	NA	-2948	NM_146149	230579	Mm.222956	NM_146149	ENSMUSG00000034871	Fam151a	2010309H15Rik	family with sequence simliarity 151, member A	protein-coding	0.030000	0.507463	
mm_89060.1	chr10	82887605	82887805	+	1	NA	NA	NA	21079	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.010000	0.452736	
mm_168878.1	chr12	40884586	40884786	-	1	NA	NA	NA	-139404	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.025000	0.562189	
mm_42932.1	chr5	122850107	122850307	+	1	NA	NA	NA	19	NM_030564	80751	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	0.115000	0.681592	
mm_150577.1	chr19	40612300	40612500	+	1	NA	NA	NA	34	NM_001304721	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.075000	0.601990	
mm_43111.1	chr5	124552774	124552974	+	1	NA	NA	NA	10	NM_026409	67848	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	0.115000	0.636816	
mm_128512.1	chr15	53327277	53327477	-	1	NA	NA	NA	18806	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.010000	0.437811	
mm_74351.1	chr8	128148667	128148867	+	1	NA	NA	NA	129458	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.000000	0.522388	
mm_6889.1	chr1	84695911	84696111	-	1	NA	NA	NA	172	NR_039588	100628595		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0.045000	0.626866	
mm_84198.1	chr9	60649613	60649813	-	1	NA	NA	NA	37821	NM_001311095	102747	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0.035000	0.577114	
mm_153298.1	chr19	37930883	37931083	-	1	NA	NA	NA	112594	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.010000	0.422886	
mm_127541.1	chr15	102104495	102104695	+	1	NA	NA	NA	1607	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.035000	0.577114	
mm_117221.1	chr13	64133831	64134031	-	1	NA	NA	NA	-4601	NM_001001321	70484	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	0.005000	0.383085	
mm_102601.1	chr11	62390928	62391128	-	1	NA	NA	NA	47487	NM_001252313	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.000000	0.358209	-19(GTTTTTAAACTC,+,0.00)
mm_160020.1	chr6	130026894	130027094	-	1	NA	NA	NA	-34	NM_053154	93971	Mm.14112	NM_053154		Klra19	Ly49s	killer cell lectin-like receptor, subfamily A, member 19	protein-coding	0.010000	0.388060	
mm_144705.1	chr18	34863400	34863600	+	1	NA	NA	NA	2293	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.010000	0.557214	
mm_60758.1	chr7	45518151	45518351	+	1	NA	NA	NA	3649	NM_001290998	56734	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0.010000	0.487562	
mm_60387.1	chr7	44473915	44474115	+	1	NA	NA	NA	3668	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.427861	
mm_118471.1	chr14	11569925	11570125	+	1	NA	NA	NA	16472	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.005000	0.417910	80(GCTTTTATACCC,+,0.00)
mm_117472.1	chr13	76256456	76256656	-	1	NA	NA	NA	-128405	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.010000	0.462687	
mm_78324.1	chr9	25147328	25147528	+	1	NA	NA	NA	4353	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.005000	0.383085	
mm_70553.1	chr8	13060506	13060706	+	1	NA	NA	NA	-302	NM_025834	66901	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.030000	0.522388	
mm_78738.1	chr9	41587334	41587534	+	1	NA	NA	NA	5508	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA	0.005000	0.407960	
mm_7267.1	chr1	95667430	95667630	-	1	NA	NA	NA	64	NM_009183	20452	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.080000	0.641791	
mm_168659.1	chr11	88896309	88896509	-	1	NA	NA	NA	-9519	NR_045955	73921	Mm.439148	NR_045955	ENSMUSG00000087338	Scpep1os	4930405P13Rik	serine carboxypeptidase 1, opposite strand	ncRNA	0.075000	0.557214	-36(CCCTATAAAAAG,-,0.00)
mm_113840.1	chr13	47193821	47194021	+	1	NA	NA	NA	-82	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.045000	0.592040	
mm_39419.1	chr5	15934639	15934839	+	1	NA	NA	NA	48	NM_001110844	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.165000	0.791045	
mm_130662.1	chr15	100644930	100645130	-	1	NA	NA	NA	4199	NR_105926	102465580		NR_105926	ENSMUSG00000098527	Mir6961	Gm27367|mmu-mir-6961	microRNA 6961	ncRNA	0.040000	0.656716	
mm_63753.1	chr7	131106165	131106365	+	1	NA	NA	NA	40018	NM_173409	233918	Mm.78341	NM_173409	ENSMUSG00000013668	4933402N03Rik	4930412O05	RIKEN cDNA 4933402N03 gene	protein-coding	0.035000	0.577114	
mm_61607.1	chr7	80030649	80030849	+	1	NA	NA	NA	4521	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.020000	0.512438	
mm_66428.1	chr7	44626839	44627039	-	1	NA	NA	NA	36053	NM_001290682	16504	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.015000	0.527363	
mm_65170.1	chr7	19681274	19681474	-	1	NA	NA	NA	86	NM_007385	11425	Mm.477720	NM_007385	ENSMUSG00000074336	Apoc4	Acl|apo-CIV|apoC-IV	apolipoprotein C-IV	protein-coding	0.010000	0.592040	
mm_112363.1	chr12	119160258	119160458	-	1	NA	NA	NA	77918	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.005000	0.253731	
mm_1912.1	chr1	85928791	85928991	+	1	NA	NA	NA	408	NR_037692	71141	Mm.314965	NR_037692	ENSMUSG00000026224	4933407L21Rik	-	RIKEN cDNA 4933407L21 gene	ncRNA	0.020000	0.507463	
mm_154640.1	chrX	7764237	7764437	+	1	NA	NA	NA	296	NM_001271491	209446	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	0.030000	0.527363	
mm_6814.1	chr1	84158554	84158754	-	1	NA	NA	NA	60307	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.417910	
mm_28264.1	chr3	88623039	88623239	-	1	NA	NA	NA	1745	NM_001198912	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.522388	
mm_119655.1	chr14	52110846	52111046	+	1	NA	NA	NA	43	NM_023879	77945	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	0.000000	0.398010	
mm_156659.1	chrX	157711294	157711494	+	1	NA	NA	NA	12421	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.005000	0.323383	
mm_103511.1	chr11	76623233	76623433	-	1	NA	NA	NA	-45594	NM_198894	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.075000	0.567164	
mm_52584.1	chr6	116650627	116650827	+	1	NA	NA	NA	43	NM_001166580	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.030000	0.557214	
mm_40314.1	chr5	43868560	43868760	+	1	NA	NA	NA	-149	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.005000	0.487562	
mm_152360.1	chr19	10088882	10089082	-	1	NA	NA	NA	12521	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	0.025000	0.537313	
mm_46799.1	chr5	113015420	113015620	-	1	NA	NA	NA	18	NM_001285806	320129	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0.175000	0.796020	
mm_171433.1	chr4	139338206	139338406	+	1	NA	NA	NA	14270	NM_001290810	69902	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	0.135000	0.721393	
mm_68160.1	chr7	102759372	102759572	-	1	NA	NA	NA	-1	NM_001168503	170639	Mm.184372	NM_130866	ENSMUSG00000043366	Olfr78	4633402A21Rik|MOL2.3|MOR18-2|Or51e2|PSGR|RA1c	olfactory receptor 78	protein-coding	0.020000	0.497512	
mm_17374.1	chr2	26933276	26933476	-	1	NA	NA	NA	135	NM_011512	20932	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	0.125000	0.726368	-83(GTCCCTTTAAGG,-,0.00),-81(CCCTTTAAGGCT,+,0.00)
mm_134652.1	chr16	21995398	21995598	-	1	NA	NA	NA	44	NM_001289582	239759	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	0.065000	0.582090	
mm_25037.1	chr3	98280336	98280536	+	1	NA	NA	NA	5	NM_008256	15360	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.040000	0.577114	-70(GCCTCGATAAGC,-,0.00),-32(TCTTATAAAGCC,+,0.00)
mm_6956.1	chr1	85991363	85991563	-	1	NA	NA	NA	-30408	NM_001033290	227326	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0.030000	0.522388	
mm_78352.1	chr9	25481501	25481701	+	1	NA	NA	NA	4	NM_026189	67484	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.165000	0.766169	
mm_15660.1	chr2	163225406	163225606	+	1	NA	NA	NA	52	NM_001098799	269389	Mm.207709	NM_001098799	ENSMUSG00000074607	Tox2	AI851523|AV026525|BI987407|Gcx1|RxHMG1	TOX high mobility group box family member 2	protein-coding	0.050000	0.552239	-87(GCTTATAAAGCT,+,0.00)
mm_165176.1	chr2	27535276	27535476	+	1	NA	NA	NA	20229	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.005000	0.452736	
mm_101082.1	chr11	11769752	11769952	-	1	NA	NA	NA	39110	NM_021891	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.005000	0.467662	
mm_19081.1	chr2	77946221	77946421	-	1	NA	NA	NA	35	NM_001290740	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	0.035000	0.412935	
mm_17467.1	chr2	28558004	28558204	-	1	NA	NA	NA	5299	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.015000	0.497512	
mm_80770.1	chr9	95559941	95560141	+	1	NA	NA	NA	224	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.140000	0.756219	
mm_39516.1	chr5	21256867	21257067	+	1	NA	NA	NA	70700	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.005000	0.323383	
mm_114419.1	chr13	64368067	64368267	+	1	NA	NA	NA	2353	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.035000	0.517413	
mm_16014.1	chr2	167421619	167421819	+	1	NA	NA	NA	9	NM_001304542	77031	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.120000	0.731343	
mm_49998.1	chr6	41048157	41048357	+	1	NA	NA	NA	-12748	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.472637	
mm_8971.1	chr1	165236824	165237024	-	1	NA	NA	NA	34	NM_145513	226591	Mm.21520	NM_145513	ENSMUSG00000040843	Tiprl	1810011K17Rik	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	protein-coding	0.120000	0.701493	
mm_18403.1	chr2	60284197	60284397	-	1	NA	NA	NA	187	NM_025422	66205	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.050000	0.487562	
mm_57689.1	chr6	128519342	128519542	-	1	NA	NA	NA	7278	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.020000	0.447761	
mm_138682.1	chr17	35916835	35917035	+	1	NA	NA	NA	-261	NM_001163818	52040	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	0.125000	0.646766	16(GGGTATAAAAGA,-,0.00)
mm_114223.1	chr13	56438816	56439016	+	1	NA	NA	NA	561	NM_177809	328258	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	0.035000	0.522388	
mm_18556.1	chr2	65211886	65212086	-	1	NA	NA	NA	26640	NM_177025	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.010000	0.393035	
mm_145544.1	chr18	60807955	60808155	+	1	NA	NA	NA	-4021	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.030000	0.582090	
mm_156453.1	chrX	142736514	142736714	+	1	NA	NA	NA	-2386	NR_030523	723976		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	0.005000	0.407960	37(GGCTATATATGG,-,0.00)
mm_83418.1	chr9	44920612	44920812	-	1	NA	NA	NA	30	NM_013795	27425	Mm.14663	NM_013795	ENSMUSG00000038717	Atp5l	4933437C06Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G	protein-coding	0.060000	0.577114	
mm_60348.1	chr7	44358479	44358679	+	1	NA	NA	NA	16451	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.025000	0.507463	
mm_29531.1	chr3	116662205	116662405	-	1	NA	NA	NA	372	NM_008246	15247	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	0.140000	0.781095	
mm_73545.1	chr8	108749417	108749617	+	1	NA	NA	NA	34873	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.005000	0.507463	
mm_115062.1	chr13	100744122	100744322	+	1	NA	NA	NA	437	NM_001190264	66128	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	0.095000	0.636816	
mm_159629.1	chr4	137545185	137545385	+	1	NA	NA	NA	6999	NR_105985	102465616		NR_105985	ENSMUSG00000099134	Mir7018	Gm27606|mmu-mir-7018	microRNA 7018	ncRNA	0.060000	0.606965	
mm_143239.1	chr17	63500465	63500665	-	1	NA	NA	NA	15	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.110000	0.701493	
mm_161244.1	chr13	98032436	98032636	-	1	NA	NA	NA	173629	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0.015000	0.432836	-28(TTCTTTTAAAAG,-,0.00),-27(TCTTTTAAAAGC,+,0.00),-27(TCTTTTAAAAGC,-,0.00),-26(CTTTTAAAAGCT,+,0.00)
mm_97560.1	chr11	78935264	78935464	+	1	NA	NA	NA	10073	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.005000	0.452736	
mm_18711.1	chr2	72232201	72232401	-	1	NA	NA	NA	-53336	NM_023057	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.015000	0.522388	
mm_17782.1	chr2	32961541	32961741	-	1	NA	NA	NA	-71	NM_009076	269261	Mm.250030	NM_009076	ENSMUSG00000038900	Rpl12	E430018F03	ribosomal protein L12	protein-coding	0.085000	0.636816	
mm_104362.1	chr11	94321369	94321569	-	1	NA	NA	NA	442	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.095000	0.636816	
mm_130923.1	chr15	102722029	102722229	-	1	NA	NA	NA	49	NM_026192	67488	Mm.71682	NM_026192	ENSMUSG00000023055	Calcoco1	1810009B06Rik|Cocoa|Gcap11|mKIAA1536	calcium binding and coiled coil domain 1	protein-coding	0.050000	0.547264	
mm_85252.1	chr9	99237134	99237334	-	1	NA	NA	NA	5	NM_001244762	623459	Mm.260891	NM_001244762	ENSMUSG00000096316	Faiml	EG623459|Gm6432	Fas apoptotic inhibitory molecule like	protein-coding	0.045000	0.542289	
mm_158243.1	chrX	106603614	106603814	-	1	NA	NA	NA	-35	NM_001281859	58861	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	0.005000	0.427861	
mm_39845.1	chr5	30889319	30889519	+	1	NA	NA	NA	85	NM_001294262	231093	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0.060000	0.611940	
mm_26332.1	chr3	142545875	142546075	+	1	NA	NA	NA	-14077	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.005000	0.512438	
mm_108463.1	chr12	83520411	83520611	+	1	NA	NA	NA	45	NM_030246	73828	Mm.38238	NM_030246	ENSMUSG00000021222	Dcaf4	1110018E21Rik|Wdr21	DDB1 and CUL4 associated factor 4	protein-coding	0.050000	0.552239	
mm_14296.1	chr2	128924805	128925005	+	1	NA	NA	NA	19115	NM_020594	57432	Mm.11675	NM_020594	ENSMUSG00000027387	Zc3h8	AU020882|E130108N08Rik|Fliz1|Zc3hdc8	zinc finger CCCH type containing 8	protein-coding	0.005000	0.427861	
mm_45670.1	chr5	77211332	77211532	-	1	NA	NA	NA	39	NM_183284	69982	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0.050000	0.616915	
mm_151536.1	chr19	58943337	58943537	+	1	NA	NA	NA	12	NM_178689	226265	Mm.103154	NM_178689	ENSMUSG00000048029	Eno4	6430537H07Rik	enolase 4	protein-coding	0.075000	0.616915	
mm_127335.1	chr15	100468966	100469166	+	1	NA	NA	NA	32	NM_134093	68614	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	0.140000	0.771144	
mm_52900.1	chr6	122706500	122706700	+	1	NA	NA	NA	-889	NM_001289831	71950	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	0.020000	0.477612	
mm_29229.1	chr3	107213356	107213556	-	1	NA	NA	NA	8276	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.517413	
mm_80993.1	chr9	103422946	103423146	+	1	NA	NA	NA	-532	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.035000	0.547264	
mm_42981.1	chr5	123228170	123228370	+	1	NA	NA	NA	80	NM_026000	67151	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0.105000	0.651741	
mm_138735.1	chr17	36970632	36970832	+	1	NA	NA	NA	10505	NM_029747	76797	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding	0.015000	0.572139	
mm_172930.1	chr9	76314069	76314269	+	1	NA	NA	NA	9409	NM_198962	387285	Mm.335300	NM_198962	ENSMUSG00000032360	Hcrtr2	OX2R|mOX2aR|mOX2bR|mOXR2	hypocretin (orexin) receptor 2	protein-coding	0.000000	0.507463	
mm_70143.1	chr7	143458500	143458700	-	1	NA	NA	NA	2450	NM_009876	12577	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.010000	0.343284	
mm_50434.1	chr6	48845874	48846074	+	1	NA	NA	NA	4318	NM_001098271	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.005000	0.447761	
mm_152594.1	chr19	11640620	11640820	-	1	NA	NA	NA	131	NM_133246	170813	Mm.240438	NM_133246	ENSMUSG00000024681	Ms4a3	HTm4	membrane-spanning 4-domains, subfamily A, member 3	protein-coding	0.005000	0.447761	
mm_30843.1	chr4	24556597	24556797	+	1	NA	NA	NA	60235	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.005000	0.278607	
mm_78826.1	chr9	44107174	44107374	+	1	NA	NA	NA	3	NM_001040632	235312	Mm.227110	NM_145613	ENSMUSG00000079592	C1qtnf5	Ctrp5	C1q and tumor necrosis factor related protein 5	protein-coding	0.030000	0.577114	
mm_31700.1	chr4	62543227	62543427	+	1	NA	NA	NA	-16520	NM_019492	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.000000	0.507463	
mm_48751.1	chr5	147902063	147902263	-	1	NA	NA	NA	-7361	NM_027872	71706	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	0.020000	0.432836	
mm_11462.1	chr2	32236566	32236766	+	1	NA	NA	NA	-17	NM_145145	99011	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0.110000	0.626866	
mm_46173.1	chr5	96921090	96921290	-	1	NA	NA	NA	-82	NR_131152	666266	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0.025000	0.482587	
mm_44409.1	chr5	17849620	17849820	-	1	NA	NA	NA	72	NM_001159557	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.442786	
mm_22456.1	chr3	3187983	3188183	+	1	NA	NA	NA	-319947	NM_013920	30942	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.000000	0.388060	
mm_142931.1	chr17	55712501	55712701	-	1	NA	NA	NA	27	NM_028370	72836	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	0.085000	0.572139	
mm_85636.1	chr9	107652129	107652329	-	1	NA	NA	NA	15170	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.020000	0.532338	
mm_46948.1	chr5	114922067	114922267	-	1	NA	NA	NA	-1073	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.020000	0.502488	
mm_154799.1	chrX	13284820	13285020	+	1	NA	NA	NA	3898	NM_010028	13205	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	0.005000	0.303483	
mm_30508.1	chr3	158029142	158029342	-	1	NA	NA	NA	2512	NM_001093753	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.000000	0.363184	
mm_60556.1	chr7	44481078	44481278	+	1	NA	NA	NA	-3339	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.467662	
mm_59864.1	chr7	30169787	30169987	+	1	NA	NA	NA	-35	NM_001033540	330503	Mm.434058	NM_001033540	ENSMUSG00000066647	Gm5113	B430201F14|EG330503	predicted gene 5113	protein-coding	0.030000	0.497512	
mm_165378.1	chr2	128429385	128429585	+	1	NA	NA	NA	-134	NR_028590	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.020000	0.547264	
mm_78647.1	chr9	40323336	40323536	+	1	NA	NA	NA	-10036	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.010000	0.517413	
mm_81456.1	chr9	109833046	109833246	+	1	NA	NA	NA	352	NM_018757	54369	Mm.12951	NM_018757	ENSMUSG00000032478	Nme6	nm23-M6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding	0.020000	0.497512	
mm_168170.1	chr10	54619237	54619437	-	1	NA	NA	NA	543415	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.050000	0.611940	
mm_4580.1	chr1	178187623	178187823	+	1	NA	NA	NA	306	NM_024282	78825	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	0.105000	0.736318	
mm_48988.1	chr6	4755848	4756048	+	1	NA	NA	NA	8642	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.040000	0.462687	
mm_158810.1	chrX	167307250	167307450	-	1	NA	NA	NA	23221	NM_001290757	170743	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	0.005000	0.393035	2(GTCTTTAAAGAG,+,0.00),2(GTCTTTAAAGAG,-,0.00)
mm_100562.1	chr11	120730335	120730535	+	1	NA	NA	NA	1586	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.015000	0.497512	
mm_83839.1	chr9	54415742	54415942	-	1	NA	NA	NA	85784	NM_172771	235380	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.030000	0.482587	
mm_134491.1	chr16	18733072	18733272	-	1	NA	NA	NA	-43675	NM_013805	12741	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	0.045000	0.537313	
mm_123578.1	chr14	67006336	67006536	-	1	NA	NA	NA	2441	NM_009761	12177	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0.005000	0.358209	-88(TGCTTTTTAAAG,-,0.00),-86(CTTTTTAAAGTT,+,0.00)
mm_130798.1	chr15	101693763	101693963	-	1	NA	NA	NA	442	NM_008476	16687	Mm.302399	NM_008476	ENSMUSG00000058354	Krt6a	2310016L08Rik|Krt2-6a|Krt2-6c|MK6a|mK6[a]	keratin 6A	protein-coding	0.015000	0.597015	
mm_45801.1	chr5	87568845	87569045	-	1	NA	NA	NA	61	NM_016771	53315	Mm.6824	NM_016771	ENSMUSG00000029273	Sult1d1	5033411P13Rik|AI987815|ST1d1|SULT-N|Sultn	sulfotransferase family 1D, member 1	protein-coding	0.015000	0.407960	79(TCCTTTTAAAGA,-,0.00),80(CCTTTTAAAGAC,+,0.00)
mm_10626.1	chr2	19657719	19657919	+	1	NA	NA	NA	78	NR_033642	100041244	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0.165000	0.776119	
mm_65782.1	chr7	28767039	28767239	-	1	NA	NA	NA	387	NM_001122766	64383	Mm.272443	NM_022432	ENSMUSG00000015149	Sirt2	5730427M03Rik|SIR2L2|Sir2l	sirtuin 2	protein-coding	0.030000	0.482587	
mm_45147.1	chr5	49204177	49204377	-	1	NA	NA	NA	81382	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.000000	0.313433	
mm_13140.1	chr2	92184098	92184298	+	1	NA	NA	NA	16	NM_001346704	192285	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0.010000	0.557214	
mm_92837.1	chr10	81499502	81499702	-	1	NA	NA	NA	535	NM_010102	13611	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0.045000	0.671642	
mm_71558.1	chr8	49370842	49371042	+	1	NA	NA	NA	-696252	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.000000	0.457711	
mm_114988.1	chr13	97495155	97495355	+	1	NA	NA	NA	12554	NR_110431	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.010000	0.442786	
mm_10296.1	chr2	10380454	10380654	+	1	NA	NA	NA	8118	NM_177386	353282	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0.000000	0.383085	
mm_130638.1	chr15	100494956	100495156	-	1	NA	NA	NA	183	NM_153407	207785	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	0.110000	0.746269	
mm_79629.1	chr9	59311686	59311886	+	1	NA	NA	NA	20214	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.000000	0.398010	24(CCCCAGAAAAGC,-,0.00)
mm_28771.1	chr3	95925098	95925298	-	1	NA	NA	NA	-4059	NM_001253758	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.005000	0.402985	-34(AAGCTTAAAAGC,-,0.00)
mm_78856.1	chr9	44379480	44379680	+	1	NA	NA	NA	90	NM_021395	12282	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	0.125000	0.706468	
mm_16122.1	chr2	170132283	170132483	+	1	NA	NA	NA	-1163	NM_001033299	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.030000	0.442786	
mm_42881.1	chr5	122354265	122354465	+	1	NA	NA	NA	-4	NM_001347453	56433	Mm.216528	NM_019780	ENSMUSG00000029462	Vps29	2010015D08Rik|AW049835|PEP11	VPS29 retromer complex component	protein-coding	0.095000	0.597015	
mm_171778.1	chr5	109907310	109907510	-	1	NA	NA	NA	-26153	NR_040366	100642166		NR_040366	ENSMUSG00000090015	Gm15446	OTTMUSG00000022004	predicted gene 15446	ncRNA	0.070000	0.547264	-39(CCCTATAAAAAG,-,0.00)
mm_32520.1	chr4	108834576	108834776	+	1	NA	NA	NA	-2	NM_025334	66073	Mm.159965	NM_025334	ENSMUSG00000028567	Txndc12	0610040B21Rik|ERp16|ERp19	thioredoxin domain containing 12 (endoplasmic reticulum)	protein-coding	0.055000	0.527363	
mm_36183.1	chr4	62208608	62208808	-	1	NA	NA	NA	-162	NM_001290350	22696	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0.075000	0.611940	
mm_141456.1	chr17	30424274	30424474	-	1	NA	NA	NA	-28194	NR_030688	623169	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0.005000	0.422886	-2(TTGCATAAAAGC,-,0.00)
mm_41544.1	chr5	92897865	92898065	+	1	NA	NA	NA	-28	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.165000	0.746269	
mm_148922.1	chr19	6976412	6976612	+	1	NA	NA	NA	1464	NM_008889	18938	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.020000	0.572139	
mm_133885.1	chr16	96525504	96525704	+	1	NA	NA	NA	57998	NM_008791	18546	Mm.5023	NM_008791	ENSMUSG00000090223	Pcp4	P16Rimb19|Pcp-4|Pep19	Purkinje cell protein 4	protein-coding	0.000000	0.437811	70(CCCCCTATAGGC,-,0.00)
mm_162197.1	chrX	118480637	118480837	-	1	NA	NA	NA	0	NM_001142750	100039551	Mm.272850	NM_001142750	ENSMUSG00000100194	Tgif2lx2	-	TGFB-induced factor homeobox 2-like, X-linked 2	protein-coding	0.015000	0.487562	
mm_60312.1	chr7	44188114	44188314	+	1	NA	NA	NA	-22	NM_010643	16617	Mm.483098	NM_010643	ENSMUSG00000063713	Klk1b24	Klk24|mGk-24	kallikrein 1-related peptidase b24	protein-coding	0.000000	0.557214	-13(GGGTTTTAAAGT,-,0.00)
mm_115809.1	chr13	19395659	19395859	-	1	NA	NA	NA	54	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.125000	0.711443	
mm_90034.1	chr10	115452486	115452686	+	1	NA	NA	NA	67627	NM_001033261	216345	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0.015000	0.537313	
mm_53927.1	chr6	4717077	4717277	-	1	NA	NA	NA	30027	NM_001130188	20392	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	0.015000	0.487562	
mm_45850.1	chr5	87779924	87780124	-	1	NA	NA	NA	5574	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.015000	0.298507	
mm_106188.1	chr11	116807556	116807756	-	1	NA	NA	NA	20390	NM_026280	67622	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0.005000	0.517413	
mm_86580.1	chr10	12976140	12976340	+	1	NA	NA	NA	-11981	NM_001163591	74732	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.025000	0.472637	
mm_92833.1	chr10	81482590	81482790	-	1	NA	NA	NA	19	NM_176954	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.155000	0.796020	
mm_58324.1	chr6	146502022	146502222	-	1	NA	NA	NA	101	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.080000	0.686567	
mm_9500.1	chr1	173730050	173730250	-	1	NA	NA	NA	11659	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.000000	0.467662	
mm_36361.1	chr4	76222463	76222663	-	1	NA	NA	NA	-944277	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.005000	0.323383	
mm_135676.1	chr16	52419857	52420057	-	1	NA	NA	NA	33124	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.343284	
mm_116702.1	chr13	50443812	50444012	-	1	NA	NA	NA	-23395	NM_001033400	328250	Mm.315205	NM_001033400	ENSMUSG00000071909	Nutm2	Fam22|Gm806	NUT family member 2	protein-coding	0.010000	0.492537	
mm_166741.1	chr6	124722055	124722255	-	1	NA	NA	NA	-3765	NR_029792	723944		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0.035000	0.611940	
mm_48729.1	chr5	147426483	147426683	-	1	NA	NA	NA	-3997	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.005000	0.512438	
mm_32462.1	chr4	107434485	107434685	+	1	NA	NA	NA	-134	NM_147221	230587	Mm.331757	NM_147221	ENSMUSG00000034762	Glis1	Gli5|Gli6|GliH1	GLIS family zinc finger 1	protein-coding	0.160000	0.815920	
mm_65041.1	chr7	18567193	18567393	-	1	NA	NA	NA	12	NM_001037168	545925	Mm.440302	NM_001037168	ENSMUSG00000070797	Psg27	EG545925|cea15	pregnancy-specific glycoprotein 27	protein-coding	0.005000	0.487562	
mm_166300.1	chr5	104113984	104114184	-	1	NA	NA	NA	4	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding	0.035000	0.477612	-26(TGCTCTAAAGAG,-,0.00)
mm_81740.1	chr9	113793228	113793428	+	1	NA	NA	NA	-2	NM_001286603	76499	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.040000	0.532338	
mm_95273.1	chr11	45851840	45852040	+	1	NA	NA	NA	-24	NM_001346760	216705	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.160000	0.746269	
mm_8492.1	chr1	153850650	153850850	-	1	NA	NA	NA	445	NM_178243	240817	Mm.439405	NM_178243	ENSMUSG00000045968	Teddm2	5830403L16Rik|AJ554213|Me9|e92	transmembrane epididymal family member 2	protein-coding	0.015000	0.517413	
mm_24054.1	chr3	87906800	87907000	+	1	NA	NA	NA	50	NM_001331052	15191	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0.120000	0.741294	
mm_27929.1	chr3	79567267	79567467	-	1	NA	NA	NA	312	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.055000	0.691542	
mm_164141.1	chr15	58134895	58135095	-	1	NA	NA	NA	87	NM_027435	70472	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0.080000	0.681592	
mm_9047.1	chr1	167284610	167284810	-	1	NA	NA	NA	417	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.180000	0.791045	
mm_46160.1	chr5	96162364	96162564	-	1	NA	NA	NA	-474	NM_144910	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.075000	0.577114	
mm_39206.1	chr4	156050369	156050569	-	1	NA	NA	NA	348	NM_029264	330010	Mm.440232	NM_029264	ENSMUSG00000029074	Ttll10	4833412E22Rik|4930595O22Rik|AU022799|BC042775|Ttll5	tubulin tyrosine ligase-like family, member 10	protein-coding	0.030000	0.601990	
mm_8523.1	chr1	154884091	154884291	-	1	NA	NA	NA	-158271	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.015000	0.442786	
mm_33112.1	chr4	124737651	124737851	+	1	NA	NA	NA	-4099	NM_008385	16330	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	0.005000	0.542289	
mm_3327.1	chr1	137928018	137928218	+	1	NA	NA	NA	-38337	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.015000	0.502488	
mm_80771.1	chr9	95560314	95560514	+	1	NA	NA	NA	597	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.080000	0.641791	
mm_88808.1	chr10	80755295	80755495	+	1	NA	NA	NA	189	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.155000	0.796020	
mm_64783.1	chr7	5125848	5126048	-	1	NA	NA	NA	2	NM_009028	19428	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	0.100000	0.671642	-33(GCCTTTAGAGGG,+,0.00)
mm_31085.1	chr4	41630501	41630701	+	1	NA	NA	NA	9701	NM_027147	69638	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.015000	0.542289	
mm_71454.1	chr8	46521663	46521863	+	1	NA	NA	NA	-30306	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.005000	0.393035	
mm_43573.1	chr5	137745859	137746059	+	1	NA	NA	NA	-10	NM_023910	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.025000	0.636816	
mm_46827.1	chr5	113219422	113219622	-	1	NA	NA	NA	-7387	NM_001033428	333048	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	0.015000	0.552239	
mm_11476.1	chr2	32384613	32384813	+	1	NA	NA	NA	-2798	NM_198001	73737	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0.010000	0.552239	
mm_36241.1	chr4	63171994	63172194	-	1	NA	NA	NA	37	NM_010616	16552	Mm.216057	NM_010616	ENSMUSG00000028357	Kif12	-	kinesin family member 12	protein-coding	0.005000	0.497512	
mm_125883.1	chr15	75704209	75704409	+	1	NA	NA	NA	21	NM_008164	14787	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	0.090000	0.661692	
mm_149227.1	chr19	10041466	10041666	+	1	NA	NA	NA	18	NM_021890	60527	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0.130000	0.741294	
mm_139008.1	chr17	45570331	45570531	+	1	NA	NA	NA	2830	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.015000	0.452736	
mm_47694.1	chr5	129704877	129705077	-	1	NA	NA	NA	3534	NM_028826	74222	Mm.159143	NM_028826	ENSMUSG00000034219	Sept14	1700016K13Rik	septin 14	protein-coding	0.025000	0.477612	
mm_153980.1	chr19	47864855	47865055	-	1	NA	NA	NA	-590	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.025000	0.477612	
mm_116216.1	chr13	32806869	32807069	-	1	NA	NA	NA	4939	NM_030215	78903	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	0.015000	0.542289	
mm_8706.1	chr1	158887683	158887883	-	1	NA	NA	NA	69655	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding	0.005000	0.447761	
mm_160246.1	chr7	105181236	105181436	-	1	NA	NA	NA	-25	NM_001011857	258160	Mm.377366	NM_001011857	ENSMUSG00000047794	Olfr685	MOR37-1	olfactory receptor 685	protein-coding	0.000000	0.472637	
mm_44614.1	chr5	25498660	25498860	-	1	NA	NA	NA	23	NM_001081383	231051	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0.150000	0.791045	
mm_101369.1	chr11	23761993	23762193	-	1	NA	NA	NA	8877	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.000000	0.283582	85(CTCTATTAAGGC,-,0.00)
mm_151037.1	chr19	47023352	47023552	+	1	NA	NA	NA	-8263	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.030000	0.537313	
mm_59796.1	chr7	29001443	29001643	+	1	NA	NA	NA	18689	NM_008279	26411	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.035000	0.577114	
mm_118137.1	chr13	104863817	104864017	-	1	NA	NA	NA	-24	NM_029984	77803	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik	family with sequence similarity 159, member B	protein-coding	0.040000	0.597015	
mm_62847.1	chr7	114316618	114316818	+	1	NA	NA	NA	-40602	NM_011965	26440	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.010000	0.502488	
mm_54668.1	chr6	39207056	39207256	-	1	NA	NA	NA	-383	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.090000	0.651741	
mm_17229.1	chr2	25574504	25574704	-	1	NA	NA	NA	267	NM_029293	75454	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	0.040000	0.537313	
mm_81039.1	chr9	105053182	105053382	+	1	NA	NA	NA	14	NM_053159	94062	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	0.085000	0.601990	
mm_172611.1	chr8	18627118	18627318	+	1	NA	NA	NA	32045	NM_173189	244329	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT	microcephaly, primary autosomal recessive 1	protein-coding	0.015000	0.492537	
mm_148173.1	chr18	78101382	78101582	-	1	NA	NA	NA	21944	NM_001171010	108052	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0.005000	0.457711	1(GTGCTTATAAGG,-,0.00),3(GCTTATAAGGCA,+,0.00)
mm_46201.1	chr5	98031096	98031296	-	1	NA	NA	NA	-234	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.115000	0.751244	
mm_102850.1	chr11	69370066	69370266	-	1	NA	NA	NA	-740	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.000000	0.437811	
mm_140250.1	chr17	84185654	84185854	+	1	NA	NA	NA	2193	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.085000	0.711443	
mm_55622.1	chr6	72235158	72235358	-	1	NA	NA	NA	319	NM_153778	71093	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0.135000	0.771144	
mm_95134.1	chr11	34783874	34784074	+	1	NA	NA	NA	-69	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.015000	0.567164	-62(CTCTTTTTAAAC,-,0.00),-60(CTTTTTAAACTC,+,0.00)
mm_9444.1	chr1	172590383	172590583	-	1	NA	NA	NA	85	NM_029084	74748	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	0.020000	0.502488	
mm_103955.1	chr11	84083522	84083722	-	1	NA	NA	NA	-15265	NM_019819	56405	Mm.240885	NM_019819	ENSMUSG00000018648	Dusp14	1110014C10Rik|2310042C07Rik|D11Ertd395e|MKP-L|Mkp6	dual specificity phosphatase 14	protein-coding	0.000000	0.333333	84(CCATTTATGCTC,+,0.00)
mm_39927.1	chr5	31602533	31602733	+	1	NA	NA	NA	-11318	NM_025796	66845	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0.005000	0.532338	
mm_82781.1	chr9	27375854	27376054	-	1	NA	NA	NA	-20853	NM_029299	75469	Mm.45824	NM_029299	ENSMUSG00000031991	Spata19	1700001L23Rik|AV047838|spergen-1	spermatogenesis associated 19	protein-coding	0.000000	0.452736	
mm_57950.1	chr6	134928354	134928554	-	1	NA	NA	NA	-638	NR_037956	381822	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	0.120000	0.646766	
mm_95639.1	chr11	53719867	53720067	+	1	NA	NA	NA	-827	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.000000	0.442786	
mm_138980.1	chr17	45456869	45457069	+	1	NA	NA	NA	17969	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.010000	0.532338	
mm_156909.1	chrX	169052773	169052973	+	1	NA	NA	NA	16262	NR_109847	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.010000	0.487562	
mm_131203.1	chr16	8619510	8619710	+	1	NA	NA	NA	18091	NM_025708	66690	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	0.010000	0.527363	-62(CATTATAAAGGC,+,0.00)
mm_144910.1	chr18	37435519	37435719	+	1	NA	NA	NA	-2	NM_053137	93883	Mm.196701	NM_053137	ENSMUSG00000043458	Pcdhb12	Pcdh3|Pcdhb5F|PcdhbL	protocadherin beta 12	protein-coding	0.015000	0.427861	
mm_122601.1	chr14	51041770	51041970	-	1	NA	NA	NA	-3	NM_183032	328401	Mm.99528	NM_183032	ENSMUSG00000052382	Rnase9	ESRL|Rak1	ribonuclease, RNase A family, 9 (non-active)	protein-coding	0.015000	0.527363	
mm_111221.1	chr12	84552960	84553160	-	1	NA	NA	NA	-16768	NM_007701	12677	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	0.015000	0.537313	
mm_97598.1	chr11	78949000	78949200	+	1	NA	NA	NA	23809	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.040000	0.522388	
mm_20309.1	chr2	127247594	127247794	-	1	NA	NA	NA	122	NM_025296	26371	Mm.45179	NM_025296	ENSMUSG00000003662	Ciao1	AW210570|Wdr39	cytosolic iron-sulfur protein assembly 1	protein-coding	0.065000	0.537313	
mm_87896.1	chr10	62071356	62071556	+	1	NA	NA	NA	39557	NM_027251	69894	Mm.294126	NM_027251	ENSMUSG00000020083	2010107G23Rik	AA545165	RIKEN cDNA 2010107G23 gene	protein-coding	0.050000	0.606965	
mm_61562.1	chr7	79536054	79536254	+	1	NA	NA	NA	20719	NR_040312	101694	Mm.41661	NR_040311	ENSMUSG00000097023	Mir9-3hg	AI854517	Mir9-3 host gene	ncRNA	0.090000	0.746269	
mm_57333.1	chr6	124741184	124741384	-	1	NA	NA	NA	-205	NM_013535	14790	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.030000	0.472637	
mm_60065.1	chr7	31213247	31213447	+	1	NA	NA	NA	-50389	NM_001310660	100043827		NM_001310660		Scgb2b1	Abpbg1|Gm4677	secretoglobin, family 2B, member 1	protein-coding	0.025000	0.412935	
mm_94916.1	chr11	29463623	29463823	+	1	NA	NA	NA	51310	NM_026465	67939	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0.005000	0.462687	
mm_69629.1	chr7	137410602	137410802	-	1	NA	NA	NA	54	NM_029886	77252	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.105000	0.706468	
mm_61744.1	chr7	82612597	82612797	+	1	NA	NA	NA	35831	NM_177894	330577	Mm.222812	NM_177894	ENSMUSG00000038570	Saxo2	1700129I04Rik|D030069K18|Fam154b	stabilizer of axonemal microtubules 2	protein-coding	0.020000	0.368159	9(TCCTATAAAGGA,-,0.00)
mm_58161.1	chr6	142472893	142473093	-	1	NA	NA	NA	116	NM_145572	232493	Mm.275975	NM_145572	ENSMUSG00000030244	Gys2	BC021322|LGS	glycogen synthase 2	protein-coding	0.015000	0.497512	
mm_119381.1	chr14	41134544	41134744	+	1	NA	NA	NA	2856	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.010000	0.432836	
mm_54385.1	chr6	31218280	31218480	-	1	NA	NA	NA	94	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.055000	0.572139	
mm_82258.1	chr9	5311337	5311537	-	1	NA	NA	NA	2588	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.005000	0.467662	
mm_97253.1	chr11	75756799	75756999	+	1	NA	NA	NA	24012	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.025000	0.462687	
mm_23216.1	chr3	45432761	45432961	+	1	NA	NA	NA	6448	NR_040594	72274	Mm.396202	NR_040594	ENSMUSG00000100799	1700027H10Rik	-	RIKEN cDNA 1700027H10 gene	ncRNA	0.010000	0.402985	
mm_25219.1	chr3	103851197	103851397	+	1	NA	NA	NA	-8498	NR_104070	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.015000	0.452736	
mm_20306.1	chr2	127188690	127188890	-	1	NA	NA	NA	19490	NM_198630	329509	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding	0.010000	0.452736	
mm_27521.1	chr3	57294997	57295197	-	1	NA	NA	NA	6822	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	0.025000	0.487562	
mm_55483.1	chr6	69017032	69017232	-	1	NA	NA	NA	310042	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.368159	-94(GTGTTTATAAGC,-,0.00),-14(CTGTTTTAAAGC,-,0.00)
mm_48760.1	chr5	148342032	148342232	-	1	NA	NA	NA	50683	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.045000	0.557214	
mm_35353.1	chr4	32267988	32268188	-	1	NA	NA	NA	-149347	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.000000	0.467662	36(ACTTATAAAGGA,+,0.00)
mm_113580.1	chr13	40860032	40860232	+	1	NA	NA	NA	364	NM_023887	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.030000	0.497512	
mm_121999.1	chr14	26591573	26591773	-	1	NA	NA	NA	12123	NM_145969	211922	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	0.000000	0.477612	
mm_125154.1	chr15	30730108	30730308	+	1	NA	NA	NA	-308918	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.015000	0.432836	
mm_121215.1	chr14	103054530	103054730	+	1	NA	NA	NA	7618	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.035000	0.582090	
mm_61723.1	chr7	81858902	81859102	+	1	NA	NA	NA	1	NM_145375	107769	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.060000	0.666667	
mm_95835.1	chr11	57011613	57011813	+	1	NA	NA	NA	95	NM_008165	14799	Mm.4920	NM_008165	ENSMUSG00000020524	Gria1	2900051M01Rik|Glr-1|Glr1|GluA1|GluR-A|GluRA|Glur-1|Glur1|HIPA1|gluR-K1	glutamate receptor, ionotropic, AMPA1 (alpha 1)	protein-coding	0.025000	0.577114	
mm_55530.1	chr6	70726684	70726884	-	1	NA	NA	NA	65391	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.542289	
mm_123323.1	chr14	62838418	62838618	-	1	NA	NA	NA	797	NR_106174	102465889		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	0.015000	0.442786	
mm_47677.1	chr5	128735915	128736115	-	1	NA	NA	NA	-231	NM_021311	57749	Mm.272720	NM_021311	ENSMUSG00000029423	Piwil1	MIWI	piwi-like RNA-mediated gene silencing 1	protein-coding	0.045000	0.601990	
mm_67242.1	chr7	75308918	75309118	-	1	NA	NA	NA	244	NM_153579	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.070000	0.656716	
mm_20602.1	chr2	131434276	131434476	-	1	NA	NA	NA	-57486	NM_001177834	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.005000	0.477612	
mm_68223.1	chr7	104428391	104428591	-	1	NA	NA	NA	36702	NM_009099	20128	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.005000	0.268657	
mm_130291.1	chr15	97008897	97009097	-	1	NA	NA	NA	46959	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.050000	0.532338	
mm_128523.1	chr15	54278565	54278765	-	1	NA	NA	NA	-181	NM_008764	18383	Mm.15383	NM_008764	ENSMUSG00000063727	Tnfrsf11b	OCIF|Opg|TR1	tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	protein-coding	0.030000	0.606965	
mm_45917.1	chr5	89441183	89441383	-	1	NA	NA	NA	16615	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.020000	0.472637	
mm_105103.1	chr11	100956884	100957084	-	1	NA	NA	NA	13633	NM_008986	19285	Mm.21864	NM_008986	ENSMUSG00000004044	Ptrf	2310075E07Rik|AW546441|Cav-p60|Cavin	polymerase I and transcript release factor	protein-coding	0.005000	0.398010	4(CCTTTTATACCA,+,0.00)
mm_92561.1	chr10	79852364	79852564	-	1	NA	NA	NA	-1968	NM_001077363	19205	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0.005000	0.512438	
mm_62300.1	chr7	100159224	100159424	+	1	NA	NA	NA	47	NM_026010	67164	Mm.46777	NM_026010	ENSMUSG00000030725	Lipt2	2610209A20Rik	lipoyl(octanoyl) transferase 2 (putative)	protein-coding	0.105000	0.696517	
mm_30728.1	chr4	13751484	13751684	+	1	NA	NA	NA	287	NM_001111027	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.060000	0.626866	
mm_113116.1	chr13	24487735	24487935	+	1	NA	NA	NA	72713	NM_001284520	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.015000	0.462687	-40(CGGTCTATAAAG,-,0.00)
mm_142930.1	chr17	54298625	54298825	-	1	NA	NA	NA	309	NM_022025	63993	Mm.155241	NM_022025	ENSMUSG00000023945	Slc5a7	CHT1	solute carrier family 5 (choline transporter), member 7	protein-coding	0.070000	0.621891	-34(GCCCTTATAAAG,-,0.00),-32(CCTTATAAAGAG,+,0.00)
mm_116643.1	chr13	49147575	49147775	-	1	NA	NA	NA	653	NM_029361	75607	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.130000	0.731343	
mm_164003.1	chr14	66361162	66361362	+	1	NA	NA	NA	16966	NM_019675	56471	Mm.35474	NM_019675	ENSMUSG00000022044	Stmn4	Lagl|R75359|RB3	stathmin-like 4	protein-coding	0.025000	0.582090	
mm_112243.1	chr12	113482464	113482664	-	1	NA	NA	NA	-7001	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.512438	
mm_78394.1	chr9	28920306	28920506	+	1	NA	NA	NA	1042723	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.005000	0.338308	
mm_30138.1	chr3	142249585	142249785	-	1	NA	NA	NA	-80457	NM_001277216	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.005000	0.467662	
mm_94699.1	chr11	20140473	20140673	+	1	NA	NA	NA	-27622	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.020000	0.492537	
mm_11900.1	chr2	50235820	50236020	+	1	NA	NA	NA	60757	NM_133839	109129	Mm.29214	NM_133839	ENSMUSG00000026766	Mmadhc	2010311D03Rik|AI314967|CblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding	0.005000	0.368159	
mm_163934.1	chr14	48670096	48670296	+	1	NA	NA	NA	908	NR_029384	606497	Mm.165199	NR_029384	ENSMUSG00000098682	Otx2os1	-	orthodenticle homeobox 2 opposite strand 1	ncRNA	0.010000	0.437811	
mm_86833.1	chr10	21289046	21289246	+	1	NA	NA	NA	-6833	NM_001042593	56422	Mm.25527	NM_019702	ENSMUSG00000019977	Hbs1l	2810035F15Rik|AI326327|eRFS	Hbs1-like (S. cerevisiae)	protein-coding	0.010000	0.388060	
mm_19552.1	chr2	98666416	98666616	-	1	NA	NA	NA	1198859	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.020000	0.333333	
mm_23510.1	chr3	60529978	60530178	+	1	NA	NA	NA	28899	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.010000	0.363184	
mm_126875.1	chr15	89384794	89384994	+	1	NA	NA	NA	-1997	NM_001160178	546648	Mm.478787	NM_001160178	ENSMUSG00000091680	Klhdc7b	EG546648|Gm306	kelch domain containing 7B	protein-coding	0.025000	0.621891	
mm_104706.1	chr11	98012912	98013112	-	1	NA	NA	NA	5360	NM_001159320	12295	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	0.015000	0.452736	
mm_135299.1	chr16	38636837	38637037	-	1	NA	NA	NA	74123	NM_026407	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.030000	0.547264	
mm_112559.1	chr13	13182615	13182815	+	1	NA	NA	NA	-1	NM_181852	107849	Mm.392548	NM_181852	ENSMUSG00000055360	Prl2c5	Ghd3|MRP-4|Mrpplf4|PLF-4	prolactin family 2, subfamily c, member 5	protein-coding	0.005000	0.437811	-33(GACTATATAAGA,-,0.00)
mm_21077.1	chr2	152830618	152830818	-	1	NA	NA	NA	-1	NM_001289739	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.040000	0.597015	
mm_75912.1	chr8	71395736	71395936	-	1	NA	NA	NA	-35	NM_181418	234395	Mm.34874	NM_181418	ENSMUSG00000034911	Ushbp1	2210404N08Rik|9430064H24|AIEBP|MCC2	Usher syndrome 1C binding protein 1	protein-coding	0.020000	0.562189	
mm_59007.1	chr7	19202278	19202478	+	1	NA	NA	NA	-10160	NM_175668	319197	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	0.025000	0.552239	
mm_3690.1	chr1	153751794	153751994	+	1	NA	NA	NA	2468	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.025000	0.537313	
mm_159959.1	chr6	88013577	88013777	-	1	NA	NA	NA	6118	NM_001293654	19349	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.010000	0.487562	
mm_124876.1	chr15	10223741	10223941	+	1	NA	NA	NA	-65	NM_001253781	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.000000	0.467662	
mm_132390.1	chr16	34994911	34995111	+	1	NA	NA	NA	-27410	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.030000	0.567164	
mm_108977.1	chr12	102743605	102743805	+	1	NA	NA	NA	-7	NM_001324515	320351	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	0.110000	0.676617	
mm_168090.1	chr10	128035472	128035672	+	1	NA	NA	NA	226	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.110000	0.646766	
mm_131320.1	chr16	11984272	11984472	+	1	NA	NA	NA	259	NM_001174086	72555	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	0.155000	0.810945	
mm_32441.1	chr4	107253829	107254029	+	1	NA	NA	NA	-5	NM_028394	72938	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25	heat shock protein family B (small), member 11	protein-coding	0.140000	0.776119	
mm_118083.1	chr13	103335865	103336065	-	1	NA	NA	NA	-1473	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.015000	0.522388	
mm_14379.1	chr2	129630602	129630802	+	1	NA	NA	NA	37533	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.005000	0.592040	
mm_107939.1	chr12	71889359	71889559	+	1	NA	NA	NA	-84	NM_001286452	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.020000	0.522388	
mm_58387.1	chr6	149332138	149332338	-	1	NA	NA	NA	22824	NM_001289662	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.005000	0.407960	
mm_27622.1	chr3	59344059	59344259	-	1	NA	NA	NA	97	NM_001162884	242050	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.030000	0.517413	
mm_109659.1	chr12	113014427	113014627	+	1	NA	NA	NA	19	NM_001291444	217893	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.200000	0.870647	
mm_1551.1	chr1	72940230	72940430	+	1	NA	NA	NA	-65465	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.010000	0.477612	
mm_75457.1	chr8	47714046	47714246	-	1	NA	NA	NA	-215	NM_172407	70925	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.170000	0.805970	
mm_14697.1	chr2	142217506	142217706	+	1	NA	NA	NA	683858	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.005000	0.383085	
mm_168476.1	chr11	48951524	48951724	+	1	NA	NA	NA	-5214	NM_001281472	621823	Mm.440151	NM_001281472	ENSMUSG00000078153	Psme2b	PA28b-p|PA28b2|Psme2-like|Psme2b-ps	protease (prosome, macropain) activator subunit 2B	protein-coding	0.050000	0.557214	
mm_583.1	chr1	39367816	39368016	+	1	NA	NA	NA	65	NM_001252218	114641	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.110000	0.666667	
mm_136119.1	chr16	85899245	85899445	-	1	NA	NA	NA	1780	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0.045000	0.592040	
mm_169614.1	chr15	37943694	37943894	-	1	NA	NA	NA	17261	NM_199476	382985	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.040000	0.487562	
mm_7502.1	chr1	121567546	121567746	-	1	NA	NA	NA	334	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	0.080000	0.641791	
mm_36821.1	chr4	104876352	104876552	-	1	NA	NA	NA	-54	NM_001316667	230558	Mm.197638	NM_146148	ENSMUSG00000035031	C8a	-	complement component 8, alpha polypeptide	protein-coding	0.015000	0.422886	
mm_122137.1	chr14	31163756	31163956	-	1	NA	NA	NA	4785	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.050000	0.542289	
mm_64827.1	chr7	12780543	12780743	-	1	NA	NA	NA	-4985	NM_001017955	232875	Mm.333573	NM_001017955	ENSMUSG00000070822	Zscan18	EG232875	zinc finger and SCAN domain containing 18	protein-coding	0.135000	0.721393	
mm_23846.1	chr3	83008058	83008258	+	1	NA	NA	NA	434	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.005000	0.447761	
mm_111558.1	chr12	101083368	101083568	-	1	NA	NA	NA	234	NM_211355	68734	Mm.87077	NM_211355	ENSMUSG00000041846	Smek1	1110034C04Rik|BC064465|Ppp4r3a|mKIAA2010	SMEK homolog 1, suppressor of mek1 (Dictyostelium)	protein-coding	0.100000	0.676617	-70(CGCTTTAAGTGG,-,0.00)
mm_11305.1	chr2	30262700	30262900	+	1	NA	NA	NA	-3403	NM_001252568	227696	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	0.000000	0.283582	
mm_54390.1	chr6	31218940	31219140	-	1	NA	NA	NA	-566	NR_110469	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.025000	0.442786	
mm_129328.1	chr15	77773307	77773507	-	1	NA	NA	NA	-18178	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.030000	0.572139	
mm_95140.1	chr11	35120992	35121192	+	1	NA	NA	NA	-364	NM_011412	20564	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit homolog 3 (Drosophila)	protein-coding	0.095000	0.696517	
mm_38835.1	chr4	149154122	149154322	-	1	NA	NA	NA	12485	NM_001081274	110208	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.030000	0.587065	
mm_147468.1	chr18	46715641	46715841	-	1	NA	NA	NA	12601	NM_033037	12583	Mm.241056	NM_033037	ENSMUSG00000033022	Cdo1	1300002L19Rik|Cdo|D18Ucla3	cysteine dioxygenase 1, cytosolic	protein-coding	0.045000	0.477612	85(GGGCATAAAAAC,-,0.00)
mm_75395.1	chr8	46097686	46097886	-	1	NA	NA	NA	26360	NM_207213	102141	Mm.267258	NM_207213	ENSMUSG00000038291	Snx25	AI661919|Gm1699|Gm173|Sbbi31	sorting nexin 25	protein-coding	0.000000	0.388060	-43(CCCTATAGAGGC,+,0.00)
mm_17579.1	chr2	30415324	30415524	-	1	NA	NA	NA	324	NM_007760	12908	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.100000	0.686567	
mm_150459.1	chr19	38264579	38264779	+	1	NA	NA	NA	-103	NM_020278	56839	Mm.298251	NM_020278	ENSMUSG00000067242	Lgi1	BB130740	leucine-rich repeat LGI family, member 1	protein-coding	0.035000	0.507463	
mm_12732.1	chr2	78869132	78869332	+	1	NA	NA	NA	185	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.130000	0.761194	
mm_164918.1	chr18	75791414	75791614	+	1	NA	NA	NA	-28664	NM_145356	207259	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0.040000	0.641791	
mm_78143.1	chr9	20975820	20976020	+	1	NA	NA	NA	873	NM_010333	14739	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0.070000	0.621891	
mm_133764.1	chr16	94569582	94569782	+	1	NA	NA	NA	-524	NM_007890	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.095000	0.587065	35(TTTTTTAAACCC,+,0.00)
mm_125401.1	chr15	41447430	41447630	+	1	NA	NA	NA	48	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.160000	0.791045	
mm_89172.1	chr10	86323790	86323990	+	1	NA	NA	NA	23478	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.005000	0.492537	
mm_40773.1	chr5	67260604	67260804	+	1	NA	NA	NA	139	NM_030108	67878	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	0.105000	0.611940	19(GGCCCTTTAAGG,-,0.00),20(GCCCTTTAAGGC,-,0.00),21(CCCTTTAAGGCC,+,0.00)
mm_36246.1	chr4	63401586	63401786	-	1	NA	NA	NA	1759	NM_001045514	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.015000	0.537313	
mm_7370.1	chr1	106759555	106759755	-	1	NA	NA	NA	87	NM_027534	70750	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	0.095000	0.671642	
mm_116001.1	chr13	24599437	24599637	-	1	NA	NA	NA	5230	NR_024599	76024	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347|OTTMUSG00000000601|OTTMUSG00000000602	X-linked lymphocyte-regulated 5 pseudogene	pseudo	0.005000	0.457711	
mm_163960.1	chr14	54894199	54894399	+	1	NA	NA	NA	156	NM_019402	54196	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	0.115000	0.805970	
mm_110921.1	chr12	76306886	76307086	-	1	NA	NA	NA	-17905	NM_001101471	238276	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.010000	0.502488	
mm_158994.1	chr1	136467741	136467941	+	1	NA	NA	NA	-7	NM_001287179	381293	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	0.015000	0.393035	-40(CTCTTTTTAAAG,-,0.00),-38(CTTTTTAAAGTT,+,0.00)
mm_149143.1	chr19	9004043	9004243	+	1	NA	NA	NA	-13761	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.000000	0.447761	
mm_379.1	chr1	34022617	34022817	+	1	NA	NA	NA	10892	NM_134448	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.005000	0.427861	
mm_139909.1	chr17	70900875	70901075	+	1	NA	NA	NA	-47443	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.020000	0.532338	
mm_117651.1	chr13	93092383	93092583	-	1	NA	NA	NA	-2350	NR_046182	408254	Mm.474857	NR_046182		A630019I02Rik	-	RIKEN cDNA A630019I02 gene	ncRNA	0.015000	0.437811	-76(ACGTTTTAAAGC,-,0.00)
mm_97400.1	chr11	77838038	77838238	+	1	NA	NA	NA	36840	NM_001291215	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.010000	0.567164	
mm_9404.1	chr1	172274035	172274235	-	1	NA	NA	NA	-15711	NM_013734	27222	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	0.005000	0.512438	-95(GGCCAGAAAAGG,-,0.00)
mm_112568.1	chr13	13559036	13559236	+	1	NA	NA	NA	-31273	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.005000	0.472637	
mm_1273.1	chr1	63442397	63442597	+	1	NA	NA	NA	-3394	NM_011780	23792	Mm.124892	NM_011780	ENSMUSG00000025964	Adam23	AW046396|MDC3	a disintegrin and metallopeptidase domain 23	protein-coding	0.005000	0.492537	
mm_24606.1	chr3	93445980	93446180	+	1	NA	NA	NA	3750	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.080000	0.606965	
mm_7596.1	chr1	125561348	125561548	-	1	NA	NA	NA	432	NM_028787	74150	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0.050000	0.606965	
mm_94178.1	chr10	128919109	128919309	-	1	NA	NA	NA	88	NM_134006	19682	Mm.439856	NM_134006	ENSMUSG00000025350	Rdh5	9-cis|AI987873|RDH4|cRDH	retinol dehydrogenase 5	protein-coding	0.010000	0.527363	86(TGCTATAAAAAA,-,0.00)
mm_37802.1	chr4	130574034	130574234	-	1	NA	NA	NA	-98	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.155000	0.815920	
mm_82178.1	chr9	123852075	123852275	+	1	NA	NA	NA	-276	NM_001110253	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.065000	0.477612	
mm_83807.1	chr9	53536603	53536803	-	1	NA	NA	NA	-32	NM_007499	11920	Mm.5088	NM_007499	ENSMUSG00000034218	Atm	AI256621|C030026E19Rik	ataxia telangiectasia mutated	protein-coding	0.100000	0.606965	31(CTTTATAGAGCC,+,0.00)
mm_145554.1	chr18	60811304	60811504	+	1	NA	NA	NA	-672	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.065000	0.611940	
mm_43854.1	chr5	143403701	143403901	+	1	NA	NA	NA	-19	NM_025841	66913	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	0.140000	0.731343	-52(GGGCCTTTAAGG,-,0.00),-51(GGCCTTTAAGGG,-,0.00),-50(GCCTTTAAGGGG,+,0.00),-50(GCCTTTAAGGGG,-,0.00),-49(CCTTTAAGGGGC,+,0.00)
mm_111622.1	chr12	102421309	102421509	-	1	NA	NA	NA	18404	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.010000	0.452736	
mm_113195.1	chr13	24943397	24943597	+	1	NA	NA	NA	345	NM_008156	14756	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0.035000	0.482587	
mm_163147.1	chr11	82962885	82963085	+	1	NA	NA	NA	-2304	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.000000	0.497512	
mm_92915.1	chr10	83648516	83648716	-	1	NA	NA	NA	48	NM_145220	216190	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.115000	0.751244	
mm_115129.1	chr13	104287769	104287969	+	1	NA	NA	NA	34	NM_001081020	108154	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.025000	0.502488	83(TCTTTTAAACTC,+,0.00)
mm_27218.1	chr3	36000486	36000686	-	1	NA	NA	NA	92	NM_023644	72039	Mm.249016	NM_023644	ENSMUSG00000027709	Mccc1	1810045E08Rik|2310058B18Rik|MCCalpha|Mcca|R75106	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	protein-coding	0.090000	0.616915	
mm_153784.1	chr19	45812200	45812400	-	1	NA	NA	NA	-9	NM_001276358	80906	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	0.055000	0.646766	
mm_58225.1	chr6	144209655	144209855	-	1	NA	NA	NA	-187	NM_001243163	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.025000	0.507463	
mm_96732.1	chr11	69692556	69692756	+	1	NA	NA	NA	3442	NM_011614	21944	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0.015000	0.462687	
mm_85520.1	chr9	106447537	106447737	-	1	NA	NA	NA	41	NM_145919	68644	Mm.268925	NM_145919	ENSMUSG00000042210	Abhd14a	1110013B16Rik|AW558221|Dorz1	abhydrolase domain containing 14A	protein-coding	0.060000	0.641791	
mm_43247.1	chr5	130145014	130145214	+	1	NA	NA	NA	226	NM_172509	212919	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	0.095000	0.696517	
mm_52882.1	chr6	122513530	122513730	+	1	NA	NA	NA	46	NM_001347434	50530	Mm.41931	NM_015776	ENSMUSG00000030116	Mfap5	MAGP-2|MFAP-5	microfibrillar associated protein 5	protein-coding	0.020000	0.537313	
mm_49538.1	chr6	30175290	30175490	+	1	NA	NA	NA	-1233	NR_038124	100463519	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	0.030000	0.601990	
mm_141499.1	chr17	31565586	31565786	-	1	NA	NA	NA	913	NM_016670	18771	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.055000	0.522388	
mm_31767.1	chr4	63544726	63544926	+	1	NA	NA	NA	61	NM_024173	66290	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0.065000	0.626866	
mm_13814.1	chr2	119208902	119209102	+	1	NA	NA	NA	-207	NM_139139	69408	Mm.222241	NM_139139	ENSMUSG00000034278	Dnajc17	1700025B16Rik|C87112|D9Bwg1371e	DnaJ heat shock protein family (Hsp40) member C17	protein-coding	0.070000	0.656716	
mm_170567.1	chr19	47092730	47092930	+	1	NA	NA	NA	2064	NM_011053	18572	Mm.41166	NM_011053	ENSMUSG00000025047	Pdcd11	1110021I22Rik|ALG-4|Pdcd7|mKIAA0185	programmed cell death 11	protein-coding	0.010000	0.512438	
mm_1595.1	chr1	74375119	74375319	+	1	NA	NA	NA	16	NM_013612	18173	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.030000	0.562189	
mm_72077.1	chr8	71568870	71569070	+	1	NA	NA	NA	43	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.015000	0.611940	
mm_67464.1	chr7	80405329	80405529	-	1	NA	NA	NA	7	NM_001081454	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.015000	0.532338	-33(TCATATAAAGGG,+,0.00)
mm_20824.1	chr2	146197931	146198131	-	1	NA	NA	NA	-23966	NM_016889	53626	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	0.020000	0.442786	
mm_70654.1	chr8	14381873	14382073	+	1	NA	NA	NA	286098	NM_172910	244310	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	discs, large (Drosophila) homolog-associated protein 2	protein-coding	0.025000	0.552239	
mm_154886.1	chrX	20797682	20797882	+	1	NA	NA	NA	-50761	NM_009703	11836	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	0.015000	0.631841	
mm_80094.1	chr9	70240276	70240476	+	1	NA	NA	NA	33026	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.005000	0.432836	
mm_43249.1	chr5	130187062	130187262	+	1	NA	NA	NA	-18	NM_019983	56715	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.015000	0.383085	
mm_28752.1	chr3	95818866	95819066	-	1	NA	NA	NA	-13	NM_001081293	75137	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	0.110000	0.696517	
mm_95148.1	chr11	35707613	35707813	+	1	NA	NA	NA	-61782	NM_145962	211347	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0.020000	0.517413	-59(TACCTTATAAGG,-,0.00),-57(CCTTATAAGGGG,+,0.00)
mm_47056.1	chr5	116381529	116381729	-	1	NA	NA	NA	41235	NM_030704	80888	Mm.21549	NM_030704	ENSMUSG00000041548	Hspb8	AU018630|AW413033|Cryac|D5Ucla4|E2IG1|H11|H11K|HSP20-like|HSP22	heat shock protein 8	protein-coding	0.025000	0.522388	
mm_153168.1	chr19	34493347	34493547	-	1	NA	NA	NA	-18312	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.015000	0.527363	
mm_92082.1	chr10	62777732	62777932	-	1	NA	NA	NA	-12226	NR_028557	100217463		NR_028557		Snord98	MBII-419	small nucleolar RNA, C/D box 98	snoRNA	0.020000	0.437811	
mm_61878.1	chr7	89632310	89632510	+	1	NA	NA	NA	-408	NM_181407	109264	Mm.334011	NM_181407	ENSMUSG00000030621	Me3	1700020C08Rik|B230207H15Rik	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding	0.020000	0.507463	
mm_164152.1	chr15	63878449	63878649	-	1	NA	NA	NA	9	NM_183194	270328	Mm.483471	NM_183194	ENSMUSG00000055827	Gsdmc3	9930109F21Rik	gasdermin C3	protein-coding	0.010000	0.487562	-41(GCCTATATAAGG,-,0.00)
mm_11318.1	chr2	30392323	30392523	+	1	NA	NA	NA	169	NM_001290508	57170	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	0.085000	0.656716	
mm_146591.1	chr18	9376705	9376905	-	1	NA	NA	NA	73345	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.000000	0.417910	
mm_26660.1	chr3	154620787	154620987	+	1	NA	NA	NA	-23789	NM_172474	209584	Mm.347513	NM_172474	ENSMUSG00000047583	Tyw3	5230400J09Rik	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	protein-coding	0.005000	0.393035	
mm_8854.1	chr1	162710676	162710876	-	1	NA	NA	NA	29780	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.040000	0.472637	
mm_163573.1	chr13	30814225	30814425	-	1	NA	NA	NA	65092	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.010000	0.472637	86(GATTATTTAAGG,-,0.00)
mm_85260.1	chr9	99411117	99411317	-	1	NA	NA	NA	25495	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.015000	0.492537	
mm_39356.1	chr5	9101117	9101317	+	1	NA	NA	NA	480	NM_001081029	652925	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.125000	0.741294	
mm_39351.1	chr5	8971816	8972016	+	1	NA	NA	NA	25230	NM_023733	74114	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.015000	0.437811	
mm_133121.1	chr16	65815182	65815382	+	1	NA	NA	NA	-351	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.085000	0.641791	
mm_167707.1	chr9	96259127	96259327	+	1	NA	NA	NA	-21	NM_001184711	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.015000	0.417910	
mm_35927.1	chr4	53032174	53032374	-	1	NA	NA	NA	20394	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.030000	0.393035	
mm_8200.1	chr1	138121720	138121920	-	1	NA	NA	NA	53306	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.412935	
mm_147835.1	chr18	62548787	62548987	-	1	NA	NA	NA	-24	NM_177829	328971	Mm.312675	NM_177829	ENSMUSG00000044176	Spink10	A230091H23Rik	serine peptidase inhibitor, Kazal type 10	protein-coding	0.075000	0.582090	
mm_136201.1	chr16	89818221	89818421	-	1	NA	NA	NA	31	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.045000	0.587065	
mm_8845.1	chr1	162702159	162702359	-	1	NA	NA	NA	38297	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.010000	0.452736	
mm_35292.1	chr4	21848336	21848536	-	1	NA	NA	NA	12	NR_028384	67735	Mm.391650	NR_028384		4930528A17Rik	-	RIKEN cDNA 4930528A17 gene	ncRNA	0.085000	0.621891	
mm_39925.1	chr5	31596802	31597002	+	1	NA	NA	NA	-17049	NM_025796	66845	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0.050000	0.587065	
mm_19339.1	chr2	90580495	90580695	-	1	NA	NA	NA	52	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.140000	0.776119	
mm_37024.1	chr4	114908833	114909033	-	1	NA	NA	NA	-35	NM_008593	17301	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	0.120000	0.741294	
mm_100586.1	chr11	120948630	120948830	+	1	NA	NA	NA	246	NM_030696	80879	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0.025000	0.597015	
mm_101268.1	chr11	21239605	21239805	-	1	NA	NA	NA	673	NM_001290628	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.045000	0.557214	
mm_52713.1	chr6	119481374	119481574	+	1	NA	NA	NA	1806	NM_133940	101358	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.030000	0.502488	
mm_87606.1	chr10	57784781	57784981	+	1	NA	NA	NA	-42	NM_021272	12140	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.020000	0.517413	
mm_44776.1	chr5	32122382	32122582	-	1	NA	NA	NA	-13990	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.000000	0.467662	13(GTCCCTTAAAGG,-,0.00),15(CCCTTAAAGGAC,+,0.00)
mm_26969.1	chr3	24760226	24760426	-	1	NA	NA	NA	23680	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.005000	0.258706	
mm_152635.1	chr19	12501742	12501942	-	1	NA	NA	NA	154	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.080000	0.631841	
mm_126179.1	chr15	78602623	78602823	+	1	NA	NA	NA	5676	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.000000	0.512438	
mm_107213.1	chr12	26444927	26445127	+	1	NA	NA	NA	11425	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.358209	
mm_108640.1	chr12	85814450	85814650	+	1	NA	NA	NA	9995	NM_021446	58520	Mm.143795	NM_021446	ENSMUSG00000021252	0610007P14Rik	1190004E09Rik|AU019315|C77855|ORF11	RIKEN cDNA 0610007P14 gene	protein-coding	0.030000	0.457711	51(CCCCCTTAAAGC,-,0.00),52(CCCCTTAAAGCG,+,0.00),53(CCCTTAAAGCGC,+,0.00)
mm_102950.1	chr11	69617977	69618177	-	1	NA	NA	NA	-172	NM_011367	20415	Mm.1431	NM_011367	ENSMUSG00000005202	Shbg	ABP	sex hormone binding globulin	protein-coding	0.015000	0.547264	
mm_76251.1	chr8	83690010	83690210	-	1	NA	NA	NA	3951	NM_001199593	320795	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	0.000000	0.388060	
mm_80652.1	chr9	90054153	90054353	+	1	NA	NA	NA	-14	NM_007801	13036	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.015000	0.527363	
mm_85090.1	chr9	91961074	91961274	-	1	NA	NA	NA	-231762	NM_001195693	100504689	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	0.025000	0.497512	
mm_169994.1	chr17	15746855	15747055	+	1	NA	NA	NA	41988	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.030000	0.527363	
mm_106791.1	chr12	4781964	4782164	+	1	NA	NA	NA	12769	NM_028376	382562	Mm.251575	NM_028376	ENSMUSG00000020639	Pfn4	2900024P18Rik	profilin family, member 4	protein-coding	0.015000	0.457711	-69(CTCTTTAGGGGC,+,0.00)
mm_67373.1	chr7	79841837	79842037	-	1	NA	NA	NA	415	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.020000	0.502488	
mm_20733.1	chr2	137093356	137093556	-	1	NA	NA	NA	23064	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.015000	0.442786	
mm_129967.1	chr15	85653795	85653995	-	1	NA	NA	NA	-49878	NR_110483	102800312	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0.035000	0.656716	
mm_98749.1	chr11	96544621	96544821	+	1	NA	NA	NA	80130	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.000000	0.467662	
mm_68936.1	chr7	126502002	126502202	-	1	NA	NA	NA	323	NM_001347658	233871	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.090000	0.651741	
mm_44009.1	chr5	147076617	147076817	+	1	NA	NA	NA	-145	NM_080795	140887	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	0.110000	0.656716	
mm_4084.1	chr1	167000895	167001095	+	1	NA	NA	NA	-422	NM_175461	226610	Mm.389217	NM_175461	ENSMUSG00000060568	Fam78b	C030014K22Rik|C030020L09Rik	family with sequence similarity 78, member B	protein-coding	0.160000	0.810945	
mm_156002.1	chrX	106583086	106583286	+	1	NA	NA	NA	0	NM_001033541	331493	Mm.249319	NM_001033541	ENSMUSG00000073010	Gm5127	B130007I08|EG331493	predicted gene 5127	protein-coding	0.005000	0.432836	
mm_63088.1	chr7	122295687	122295887	+	1	NA	NA	NA	6662	NM_008855	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.005000	0.393035	79(TTTTTTATGGAG,+,0.00)
mm_120380.1	chr14	64588249	64588449	+	1	NA	NA	NA	234	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA	0.075000	0.611940	
mm_161473.1	chr15	79532659	79532859	-	1	NA	NA	NA	158	NM_152806	67040	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.000000	0.348259	
mm_68976.1	chr7	126587465	126587665	-	1	NA	NA	NA	-1748	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.015000	0.572139	
mm_139557.1	chr17	56875429	56875629	+	1	NA	NA	NA	-104	NM_030141	78625	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0.015000	0.547264	
mm_150274.1	chr19	34244857	34245057	+	1	NA	NA	NA	10416	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.035000	0.552239	
mm_166990.1	chr7	45924015	45924215	-	1	NA	NA	NA	-2689	NM_010129	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.025000	0.616915	
mm_150279.1	chr19	34251672	34251872	+	1	NA	NA	NA	3601	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.020000	0.522388	
mm_169709.1	chr15	75909174	75909374	-	1	NA	NA	NA	70	NM_001285433	66656	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0.110000	0.706468	
mm_69702.1	chr7	140082100	140082300	-	1	NA	NA	NA	101	NM_001190386	68566	Mm.44241	NM_026769	ENSMUSG00000025468	Caly	0710001P07Rik|1110004A22Rik|Calcyon|Drd1ip	calcyon neuron-specific vesicular protein	protein-coding	0.025000	0.582090	
mm_106726.1	chr12	3873012	3873212	+	1	NA	NA	NA	-10868	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.000000	0.577114	
mm_74583.1	chr8	11281986	11282186	-	1	NA	NA	NA	-30719	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.010000	0.512438	-34(GCCTTTCTAGGC,+,0.00)
mm_26769.1	chr3	8923709	8923909	-	1	NA	NA	NA	48	NM_025434	66230	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.085000	0.621891	
mm_31631.1	chr4	59287340	59287540	+	1	NA	NA	NA	27389	NR_105031	101055769	Mm.421401	NR_105031		Gm12596	OTTMUSG00000007649	predicted gene 12596	ncRNA	0.000000	0.422886	-88(GCATATATAAAG,-,0.00),-67(GGCCTTAAAGGA,-,0.00)
mm_76569.1	chr8	88662263	88662463	-	1	NA	NA	NA	15016	NM_145857	257632	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0.000000	0.542289	
mm_172648.1	chr8	27260280	27260480	+	1	NA	NA	NA	53	NM_007918	13685	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0.110000	0.756219	
mm_145372.1	chr18	56733657	56733857	+	1	NA	NA	NA	25944	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.000000	0.328358	-99(TTTTATATAGTG,+,0.00),-70(TTTTATATAGTG,+,0.00),-46(TCTTTTATATAG,+,0.00),-44(TTTTATATAGTG,+,0.00)
mm_72801.1	chr8	87472677	87472877	+	1	NA	NA	NA	-35	NR_033430	100040294	Mm.213632	NR_033430	ENSMUSG00000097248	Gm2694	C230036H16Rik|linc1582	predicted gene 2694	ncRNA	0.145000	0.741294	
mm_23417.1	chr3	58539459	58539659	+	1	NA	NA	NA	-13675	NM_030685	28146	Mm.29702	NM_030685	ENSMUSG00000027808	Serp1	D3Ucla1|Ramp4	stress-associated endoplasmic reticulum protein 1	protein-coding	0.015000	0.393035	
mm_12715.1	chr2	77290926	77291126	+	1	NA	NA	NA	-10434	NM_175465	228071	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.055000	0.472637	
mm_30463.1	chr3	154093975	154094175	-	1	NA	NA	NA	120639	NM_001081263	242259	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0.020000	0.507463	
mm_169620.1	chr15	39244419	39244619	-	1	NA	NA	NA	46233	NM_053271	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.015000	0.407960	
mm_109490.1	chr12	111444985	111445185	+	1	NA	NA	NA	2424	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.035000	0.572139	
mm_86454.1	chr10	4346696	4346896	+	1	NA	NA	NA	41312	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.070000	0.686567	
mm_99349.1	chr11	101583389	101583589	+	1	NA	NA	NA	1247	NM_144830	217203	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.005000	0.368159	
mm_148788.1	chr19	6115622	6115822	+	1	NA	NA	NA	2864	NM_133678	66406	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.010000	0.487562	-71(AGCTTTTAAAGC,-,0.00),-70(GCTTTTAAAGCA,+,0.00)
mm_146887.1	chr18	25753522	25753722	-	1	NA	NA	NA	361	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.090000	0.557214	
mm_88749.1	chr10	80295867	80296067	+	1	NA	NA	NA	3458	NM_001310726	20054	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	0.045000	0.641791	
mm_89322.1	chr10	87931216	87931416	+	1	NA	NA	NA	-35355	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.358209	-40(CTCCTTAAGAGC,-,0.00)
mm_114435.1	chr13	65278724	65278924	+	1	NA	NA	NA	-30	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.095000	0.597015	
mm_113211.1	chr13	25097477	25097677	+	1	NA	NA	NA	41573	NM_177577	195208	Mm.284719	NM_177577	ENSMUSG00000035910	Dcdc2a	AW492955|Dcdc2|RU2	doublecortin domain containing 2a	protein-coding	0.035000	0.442786	-31(CTCTAAATAGCC,+,0.00)
mm_53254.1	chr6	127796366	127796566	+	1	NA	NA	NA	-8323	NR_106092	102466996		NR_106092	ENSMUSG00000104804	Mir7233	mmu-mir-7233	microRNA 7233	ncRNA	0.010000	0.507463	
mm_13842.1	chr2	119478767	119478967	+	1	NA	NA	NA	-1238	NM_026574	68142	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	0.040000	0.407960	86(CACTTTATAAGA,-,0.00)
mm_50857.1	chr6	55203378	55203578	+	1	NA	NA	NA	95	NM_001142781	330323	Mm.268997	NM_177883	ENSMUSG00000038022	Fam188b	C330043M08Rik|Gm1406	family with sequence similarity 188, member B	protein-coding	0.075000	0.641791	
mm_49549.1	chr6	30512186	30512386	+	1	NA	NA	NA	0	NM_029373	75647	Mm.46117	NM_027073	ENSMUSG00000029784	Ssmem1	1700016K02Rik|1700025E21Rik	serine-rich single-pass membrane protein 1	protein-coding	0.015000	0.427861	
mm_120923.1	chr14	76438315	76438515	+	1	NA	NA	NA	22594	NM_207652	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.010000	0.333333	
mm_120134.1	chr14	60265176	60265376	+	1	NA	NA	NA	71	NM_144843	219135	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	0.095000	0.686567	
mm_126792.1	chr15	86333738	86333938	+	1	NA	NA	NA	119379	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.000000	0.572139	
mm_113398.1	chr13	33192858	33193058	+	1	NA	NA	NA	-1	NM_011460	20726	Mm.234774	NM_011460	ENSMUSG00000054266	Serpinb9d	AT2|Spi9|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9d	protein-coding	0.020000	0.547264	
mm_62207.1	chr7	97842849	97843049	+	1	NA	NA	NA	10	NM_011035	18479	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding	0.060000	0.646766	
mm_133485.1	chr16	90220502	90220702	+	1	NA	NA	NA	-140	NM_011434	20655	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.125000	0.691542	
mm_43803.1	chr5	142895218	142895418	+	1	NA	NA	NA	-80	NM_001033312	231863	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0.080000	0.582090	
mm_48639.1	chr5	145191469	145191669	-	1	NA	NA	NA	23	NM_020582	57423	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	0.060000	0.606965	
mm_123210.1	chr14	59397095	59397295	-	1	NA	NA	NA	-3683	NM_001164289	628705	Mm.479244	NM_001164289	ENSMUSG00000091144	Phf11c	EG628705|Gm6907|Phf11	PHD finger protein 11C	protein-coding	0.010000	0.487562	
mm_76588.1	chr8	89042506	89042706	-	1	NA	NA	NA	1556	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.100000	0.611940	
mm_124052.1	chr14	77874751	77874951	-	1	NA	NA	NA	66	NM_025384	66148	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	0.095000	0.666667	
mm_4184.1	chr1	171160222	171160422	+	1	NA	NA	NA	4804	NM_001315500	17528	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0.025000	0.552239	
mm_8448.1	chr1	152902549	152902749	-	1	NA	NA	NA	-3	NM_001005507	226517	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.115000	0.761194	
mm_26530.1	chr3	146117395	146117595	+	1	NA	NA	NA	-4296	NM_134160	171166	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	0.045000	0.646766	-79(CCCCATAAAGGG,-,0.00)
mm_114391.1	chr13	63272701	63272901	+	1	NA	NA	NA	24346	NR_045794	100504114	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	0.055000	0.651741	
mm_36814.1	chr4	103290762	103290962	-	1	NA	NA	NA	1	NM_027612	70941	Mm.158501	NM_027612	ENSMUSG00000028520	4921539E11Rik	-	RIKEN cDNA 4921539E11 gene	protein-coding	0.010000	0.432836	
mm_65603.1	chr7	27361252	27361452	-	1	NA	NA	NA	-5344	NM_138676	192192	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	0.015000	0.462687	
mm_101213.1	chr11	20080503	20080703	-	1	NA	NA	NA	32348	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.010000	0.373134	
mm_56029.1	chr6	86607608	86607808	-	1	NA	NA	NA	-20466	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.010000	0.572139	
mm_55926.1	chr6	84586960	84587160	-	1	NA	NA	NA	6750	NM_175475	232174	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.020000	0.522388	
mm_40437.1	chr5	53590562	53590762	+	1	NA	NA	NA	176	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.105000	0.686567	
mm_16074.1	chr2	168158984	168159184	+	1	NA	NA	NA	-4571	NR_040327	77017	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	0.015000	0.562189	
mm_5694.1	chr1	43186206	43186406	-	1	NA	NA	NA	10455	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.015000	0.472637	
mm_79927.1	chr9	65630658	65630858	+	1	NA	NA	NA	176	NM_028030	71973	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	0.095000	0.676617	
mm_57735.1	chr6	128970377	128970577	-	1	NA	NA	NA	-683	NM_001168224	70809	Mm.439891	NM_027562	ENSMUSG00000000248	Clec2g	4632413B12Rik|Clr-c|Clr-d|Clrc|Clrd|Clrx|Ddv10|Ocilrp1	C-type lectin domain family 2, member g	protein-coding	0.015000	0.388060	
mm_154688.1	chrX	7922859	7923059	+	1	NA	NA	NA	3137	NM_013892	30052	Mm.4881	NM_013892	ENSMUSG00000039278	Pcsk1n	AI848336|KEP|PEN|PEN19|PEN20|Pan3|SAAS|SAASCT|bLEN|lLEN|proSAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding	0.080000	0.626866	
mm_36818.1	chr4	104858643	104858843	-	1	NA	NA	NA	17655	NM_001290645	230558	Mm.197638	NM_146148	ENSMUSG00000035031	C8a	-	complement component 8, alpha polypeptide	protein-coding	0.005000	0.412935	
mm_142620.1	chr17	47010441	47010641	-	1	NA	NA	NA	-9	NM_001177374	224826	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|ENSMUSG00000043296|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0.070000	0.626866	
mm_169601.1	chr15	35371690	35371890	+	1	NA	NA	NA	244	NM_177151	666173	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0.090000	0.686567	
mm_115623.1	chr13	12104386	12104586	-	1	NA	NA	NA	2459	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.005000	0.432836	
mm_146329.1	chr18	80715277	80715477	+	1	NA	NA	NA	-2306	NM_001164109	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.040000	0.592040	
mm_80439.1	chr9	77941162	77941362	+	1	NA	NA	NA	23897	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.030000	0.502488	
mm_61708.1	chr7	81213956	81214156	+	1	NA	NA	NA	252	NM_008803	18584	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.130000	0.706468	
mm_28305.1	chr3	89227287	89227487	-	1	NA	NA	NA	-189	NR_030579	100124470		NR_030579	ENSMUSG00000076255	Mir92b	Mirn92b|mir-92b|mmu-mir-92b	microRNA 92b	ncRNA	0.060000	0.582090	-33(GAGTATTTAAAG,-,0.00)
mm_145475.1	chr18	60375966	60376166	+	1	NA	NA	NA	37	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.462687	
mm_119596.1	chr14	50964826	50965026	+	1	NA	NA	NA	8785	NM_001123371	667034	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	0.005000	0.532338	
mm_173002.1	chrM	1733	1933	+	1	NA	NA	NA	NA	NA									0.030000	0.388060	
mm_21068.1	chr2	152814873	152815073	-	1	NA	NA	NA	15744	NM_001289716	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.005000	0.383085	
mm_145462.1	chr18	60246513	60246713	+	1	NA	NA	NA	26654	NM_001034859	225594	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	0.010000	0.432836	
mm_124501.1	chr14	121879435	121879635	-	1	NA	NA	NA	-127	NR_130999	78312	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0.025000	0.447761	
mm_38633.1	chr4	142422076	142422276	-	1	NA	NA	NA	-182775	NM_001109685	71529	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	0.000000	0.422886	
mm_21474.1	chr2	161108964	161109164	-	1	NA	NA	NA	22	NM_173368	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0.030000	0.497512	
mm_50364.1	chr6	48651674	48651874	+	1	NA	NA	NA	4413	NM_212486	243374	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	0.005000	0.472637	
mm_162080.1	chrX	26309913	26310113	-	1	NA	NA	NA	31	NM_001100445	100039065	Mm.411645	NM_001100445	ENSMUSG00000083628	Gm2030	-	predicted gene 2030	protein-coding	0.010000	0.467662	
mm_54602.1	chr6	38307182	38307382	-	1	NA	NA	NA	-8023	NM_172467	209032	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	0.030000	0.442786	
mm_68102.1	chr7	102016051	102016251	-	1	NA	NA	NA	2004	NM_010531	16068	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.025000	0.552239	
mm_95635.1	chr11	53706723	53706923	+	1	NA	NA	NA	496	NM_009012	19360	Mm.4888	NM_009012	ENSMUSG00000020380	Rad50	Mrell|Rad50l	RAD50 double strand break repair protein	protein-coding	0.110000	0.716418	
mm_73751.1	chr8	114752641	114752841	+	1	NA	NA	NA	313089	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.020000	0.328358	
mm_22847.1	chr3	28052543	28052743	+	1	NA	NA	NA	68472	NM_008875	18805	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.010000	0.338308	
mm_112741.1	chr13	19339755	19339955	+	1	NA	NA	NA	55958	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.497512	
mm_93351.1	chr10	100590330	100590530	-	1	NA	NA	NA	-1171	NM_175128	68281	Mm.268474	NM_175128	ENSMUSG00000046567	4930430F08Rik	4930571E09Rik|A730088G13Rik|AW551239|C430008C19Rik	RIKEN cDNA 4930430F08 gene	protein-coding	0.000000	0.373134	83(GACTTTAAAAGG,-,0.00),84(ACTTTAAAAGGC,+,0.00)
mm_147471.1	chr18	46728255	46728455	-	1	NA	NA	NA	-13	NM_033037	12583	Mm.241056	NM_033037	ENSMUSG00000033022	Cdo1	1300002L19Rik|Cdo|D18Ucla3	cysteine dioxygenase 1, cytosolic	protein-coding	0.045000	0.582090	-34(GAGCTTAAAAAG,-,0.00),-32(GCTTAAAAAGGG,+,0.00)
mm_167282.1	chr8	39605371	39605571	-	1	NA	NA	NA	37207	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.273632	65(AACTTTATAAGA,-,0.00)
mm_142543.1	chr17	46556010	46556210	-	1	NA	NA	NA	52	NM_020493	20807	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0.115000	0.756219	-93(CTCTTTATATGG,-,0.00),-91(CTTTATATGGGG,+,0.00)
mm_111424.1	chr12	91589944	91590144	-	1	NA	NA	NA	-395	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.170000	0.776119	50(CGCTATATAAAG,-,0.00),52(CTATATAAAGGG,+,0.00),52(CTATATAAAGGG,-,0.00)
mm_88929.1	chr10	81257225	81257425	+	1	NA	NA	NA	26	NM_001285853	17179	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0.085000	0.676617	
mm_130920.1	chr15	102706978	102707178	-	1	NA	NA	NA	15100	NM_026192	67488	Mm.71682	NM_026192	ENSMUSG00000023055	Calcoco1	1810009B06Rik|Cocoa|Gcap11|mKIAA1536	calcium binding and coiled coil domain 1	protein-coding	0.005000	0.462687	
mm_138249.1	chr17	34589860	34590060	+	1	NA	NA	NA	154	NM_134116	106512	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.020000	0.611940	
mm_79953.1	chr9	66126589	66126789	+	1	NA	NA	NA	78	NM_026635	68250	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	0.045000	0.477612	
mm_53485.1	chr6	135065574	135065774	+	1	NA	NA	NA	12	NM_181444	232431	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	0.105000	0.681592	-33(GCCTTTATAACC,+,0.00)
mm_21531.1	chr2	163645031	163645231	-	1	NA	NA	NA	12	NM_012032	26943	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	0.100000	0.676617	
mm_82669.1	chr9	22130108	22130308	-	1	NA	NA	NA	390	NM_007388	11433	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.015000	0.552239	-37(GAGTTTATAGGC,-,0.00)
mm_29298.1	chr3	107895712	107895912	-	1	NA	NA	NA	-42	NM_010360	14866	Mm.282351	NM_010360	ENSMUSG00000004032	Gstm5	-	glutathione S-transferase, mu 5	protein-coding	0.075000	0.631841	
mm_161290.1	chr14	26206880	26207080	-	1	NA	NA	NA	45	NM_001270495	100039257	Mm.33344	NM_001270495	ENSMUSG00000021867	Tmem254b	ENSMUSG00000021867|Gm9746	transmembrane protein 254b	protein-coding	0.050000	0.527363	
mm_19799.1	chr2	110210167	110210367	-	1	NA	NA	NA	95458	NM_130452	170442	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	0.035000	0.517413	
mm_150121.1	chr19	29951714	29951914	+	1	NA	NA	NA	6024	NM_001164724	77125	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	0.005000	0.393035	
mm_38687.1	chr4	145194859	145195059	-	1	NA	NA	NA	46	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.100000	0.651741	
mm_31371.1	chr4	47353194	47353394	+	1	NA	NA	NA	72	NM_009370	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.140000	0.766169	
mm_23333.1	chr3	54361010	54361210	+	1	NA	NA	NA	3	NM_015784	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0.015000	0.572139	-34(AGCTATATAAAC,-,0.00),47(GCCCTTATATGC,-,0.00),49(CCTTATATGCTC,+,0.00)
mm_82515.1	chr9	20581200	20581400	-	1	NA	NA	NA	-28	NM_172919	244721	Mm.86627	NM_172919	ENSMUSG00000058192	Zfp846	2210010B09Rik|9130221F13|Znf846	zinc finger protein 846	protein-coding	0.055000	0.552239	
mm_61405.1	chr7	73418188	73418388	+	1	NA	NA	NA	-42514	NR_040324	319783	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.040000	0.577114	
mm_76791.1	chr8	102739190	102739390	-	1	NA	NA	NA	45821	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.000000	0.522388	
mm_36386.1	chr4	77154646	77154846	-	1	NA	NA	NA	1057149	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.010000	0.373134	-30(TACTATTAAAGA,-,0.00)
mm_77587.1	chr8	123859840	123860040	-	1	NA	NA	NA	269	NM_028536	73420	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	0.125000	0.691542	
mm_71974.1	chr8	70594093	70594293	+	1	NA	NA	NA	-288	NM_023627	71780	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.040000	0.656716	
mm_8910.1	chr1	163312906	163313106	-	1	NA	NA	NA	644	NM_011127	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.025000	0.402985	16(CGCTTTTTAAGA,-,0.00)
mm_125359.1	chr15	39434202	39434402	+	1	NA	NA	NA	-225209	NM_001256384	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.020000	0.437811	
mm_138412.1	chr17	35068727	35068927	+	1	NA	NA	NA	1502	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.025000	0.547264	
mm_101786.1	chr11	45955332	45955532	-	1	NA	NA	NA	71	NM_001080969	66628	Mm.269083	NM_001080969	ENSMUSG00000011254	Thg1l	-	tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	protein-coding	0.060000	0.557214	
mm_16128.1	chr2	170284870	170285070	+	1	NA	NA	NA	-71391	NR_040610	73303	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.035000	0.492537	
mm_101479.1	chr11	30986152	30986352	-	1	NA	NA	NA	113	NM_026527	68044	Mm.32656	NM_026527	ENSMUSG00000020309	Chac2	-	ChaC, cation transport regulator 2	protein-coding	0.050000	0.582090	
mm_166647.1	chr6	85475558	85475758	-	1	NA	NA	NA	-23688	NR_028081	73327	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	0.005000	0.537313	29(ACTTAAAAAGCC,+,0.00)
mm_95760.1	chr11	54906688	54906888	+	1	NA	NA	NA	3934	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.010000	0.527363	
mm_66725.1	chr7	46122818	46123018	-	1	NA	NA	NA	-22154	NM_001204411	16514	Mm.333863	NM_010602	ENSMUSG00000096146	Kcnj11	Kir6.2|mBIR	potassium inwardly rectifying channel, subfamily J, member 11	protein-coding	0.015000	0.577114	
mm_35020.1	chr4	3898913	3899113	-	1	NA	NA	NA	-26908	NM_020021	17451	Mm.459300	NM_020021	ENSMUSG00000078365	Mos	c-mos	Moloney sarcoma oncogene	protein-coding	0.000000	0.268657	
mm_127519.1	chr15	102028106	102028306	+	1	NA	NA	NA	-10	NM_010664	16668	Mm.22479	NM_010664	ENSMUSG00000023043	Krt18	CK18|K18|Krt1-18	keratin 18	protein-coding	0.075000	0.641791	
mm_30917.1	chr4	32626782	32626982	+	1	NA	NA	NA	11412	NM_011997	26885	Mm.22279	NM_011997	ENSMUSG00000028282	Casp8ap2	D4Ertd659e|FLASH	caspase 8 associated protein 2	protein-coding	0.000000	0.323383	-94(CCCTCTATAAGA,-,0.00)
mm_74252.1	chr8	124862533	124862733	+	1	NA	NA	NA	396	NM_025615	66523	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	0.030000	0.432836	
mm_53313.1	chr6	129182841	129183041	+	1	NA	NA	NA	2326	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.000000	0.402985	
mm_131110.1	chr16	5146850	5147050	+	1	NA	NA	NA	-159	NM_001127725	665119	Mm.102072	NM_001127725	ENSMUSG00000091712	Sec14l5	-	SEC14-like lipid binding 5	protein-coding	0.040000	0.611940	
mm_162574.1	chr1	176837435	176837635	+	1	NA	NA	NA	-1402	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0.015000	0.383085	
mm_92627.1	chr10	80320458	80320658	-	1	NA	NA	NA	-10	NM_025521	66374	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.090000	0.606965	-68(GGCTCTTTAAGA,-,0.00),-65(TCTTTAAGACGG,+,0.00)
mm_120939.1	chr14	76599655	76599855	+	1	NA	NA	NA	-42866	NR_027699	72661	Mm.320384	NM_001160326	ENSMUSG00000052584	Serp2	2810032E02Rik	stress-associated endoplasmic reticulum protein family member 2	protein-coding	0.020000	0.502488	
mm_136249.1	chr16	90937258	90937458	-	1	NA	NA	NA	-2509	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.040000	0.532338	
mm_67069.1	chr7	67759672	67759872	-	1	NA	NA	NA	-30	NM_207663	233335	Mm.60526	NM_183312	ENSMUSG00000030554	Synm	4930412K21Rik|AI852401|Dmn|E130104F11|Syn|Synemin	synemin, intermediate filament protein	protein-coding	0.140000	0.761194	
mm_148495.1	chr19	4156497	4156697	+	1	NA	NA	NA	1951	NM_016933	19265	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	0.005000	0.517413	
mm_127775.1	chr15	3303445	3303645	-	1	NA	NA	NA	-19	NM_001166063	100039139	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	ENSMUSG00000071814	coiled-coil domain containing 152	protein-coding	0.060000	0.587065	
mm_161585.1	chr16	32400167	32400367	+	1	NA	NA	NA	-239	NM_001160402	277203	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0.005000	0.432836	
mm_126975.1	chr15	93432824	93433024	+	1	NA	NA	NA	34460	NM_001285863	223828	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.005000	0.437811	
mm_16817.1	chr2	11398406	11398606	-	1	NA	NA	NA	-6	NR_040615	77543	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.010000	0.467662	
mm_161030.1	chr12	8921183	8921383	+	1	NA	NA	NA	-24	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.000000	0.358209	
mm_172553.1	chr8	103943823	103944023	-	1	NA	NA	NA	-157702	NM_009868	12562	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.015000	0.487562	
mm_113594.1	chr13	41000927	41001127	+	1	NA	NA	NA	17	NM_026550	68083	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0.065000	0.631841	
mm_61578.1	chr7	79841954	79842154	+	1	NA	NA	NA	298	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.030000	0.577114	
mm_12390.1	chr2	69897134	69897334	+	1	NA	NA	NA	-12	NM_001303033	68795	Mm.314576	NM_177783	ENSMUSG00000044308	Ubr3	1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding	0.115000	0.731343	
mm_150294.1	chr19	34493388	34493588	+	1	NA	NA	NA	-18353	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.010000	0.527363	
mm_149208.1	chr19	9980763	9980963	+	1	NA	NA	NA	263	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.010000	0.422886	
mm_146924.1	chr18	31949480	31949680	-	1	NA	NA	NA	56	NM_001025381	574402	Mm.391108	NM_001025381	ENSMUSG00000052229	Gpr17	AI853548	G protein-coupled receptor 17	protein-coding	0.010000	0.562189	-32(CCTTAAATAGTC,+,0.00)
mm_6100.1	chr1	63730250	63730450	-	1	NA	NA	NA	-32	NM_029696	76668	Mm.30494	NM_029696	ENSMUSG00000025963	Mdh1b	1700124B08Rik|AV255588	malate dehydrogenase 1B, NAD (soluble)	protein-coding	0.060000	0.502488	
mm_24539.1	chr3	93279612	93279812	+	1	NA	NA	NA	-40037	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.015000	0.417910	
mm_106512.1	chr11	120493397	120493597	-	1	NA	NA	NA	1660	NM_013770	27376	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0.010000	0.527363	
mm_55061.1	chr6	49047870	49048070	-	1	NA	NA	NA	11452	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.035000	0.547264	
mm_139769.1	chr17	64677898	64678098	+	1	NA	NA	NA	76349	NM_008549	17158	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.025000	0.422886	
mm_117802.1	chr13	97434966	97435166	-	1	NA	NA	NA	96	NR_110432	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.030000	0.552239	
mm_137432.1	chr17	26360291	26360491	+	1	NA	NA	NA	-54574	NM_001081656	240055	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	0.010000	0.557214	
mm_173242.1	chrX	89199738	89199938	+	1	NA	NA	NA	209851	NM_008821	18630	Mm.3086	NM_008821	ENSMUSG00000035395	Pet2	PC231|PC326|Pex3	plasmacytoma expressed transcript 2	protein-coding	0.030000	0.512438	
mm_26801.1	chr3	9886605	9886805	-	1	NA	NA	NA	-53026	NM_001195031	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.010000	0.427861	
mm_151479.1	chr19	58676113	58676313	+	1	NA	NA	NA	5848	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.055000	0.542289	
mm_73830.1	chr8	117460318	117460518	+	1	NA	NA	NA	1153	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.005000	0.542289	69(CCCCTTTTAAGC,-,0.00),71(CCTTTTAAGCTG,+,0.00)
mm_28018.1	chr3	83044899	83045099	-	1	NA	NA	NA	4864	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.015000	0.417910	
mm_125611.1	chr15	61985287	61985487	+	1	NA	NA	NA	46	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.070000	0.626866	-34(CCCTTTATATTC,+,0.00)
mm_130704.1	chr15	100720064	100720264	-	1	NA	NA	NA	313	NM_001161768	207839	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	0.025000	0.487562	
mm_62509.1	chr7	102107048	102107248	+	1	NA	NA	NA	5405	NM_009710	11870	Mm.261071	NM_009710	ENSMUSG00000030996	Art1	ADPRT|ARTC1|Yac-1	ADP-ribosyltransferase 1	protein-coding	0.080000	0.661692	
mm_44989.1	chr5	37717100	37717300	-	1	NA	NA	NA	-47	NM_022416	64293	Mm.103714	NM_022416	ENSMUSG00000029123	Stk32b	2510009F08Rik|STKG6|Stk32|YANK2	serine/threonine kinase 32B	protein-coding	0.050000	0.651741	
mm_134229.1	chr16	11365676	11365876	-	1	NA	NA	NA	-39872	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.010000	0.547264	
mm_16908.1	chr2	13491867	13492067	-	1	NA	NA	NA	-91	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.000000	0.378109	
mm_36354.1	chr4	74251681	74251881	-	1	NA	NA	NA	-98	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.090000	0.641791	
mm_84104.1	chr9	58312295	58312495	-	1	NA	NA	NA	817	NM_010729	16949	Mm.250492	NM_010729	ENSMUSG00000032334	Loxl1	Loxl	lysyl oxidase-like 1	protein-coding	0.110000	0.671642	
mm_116294.1	chr13	36117170	36117370	-	1	NA	NA	NA	87	NM_201358	380840	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	0.060000	0.467662	
mm_113018.1	chr13	21981420	21981620	+	1	NA	NA	NA	326	NM_001162929	195236	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	0.115000	0.691542	-73(GCTTTTCTGGCG,+,0.00)
mm_148178.1	chr18	78142072	78142272	-	1	NA	NA	NA	-53	NM_001171011	108052	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0.020000	0.467662	53(GAGCCTAAAGGG,-,0.00)
mm_7374.1	chr1	106768882	106769082	-	1	NA	NA	NA	-9240	NM_001316750	70750	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	0.000000	0.442786	
mm_54896.1	chr6	47302567	47302767	-	1	NA	NA	NA	58271	NM_025771	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.010000	0.432836	37(CCTTATATAGCT,+,0.00)
mm_163855.1	chr14	19418401	19418601	-	1	NA	NA	NA	184086	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.015000	0.328358	
mm_68398.1	chr7	109600683	109600883	-	1	NA	NA	NA	15785	NR_037617	76954	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.010000	0.487562	
mm_108971.1	chr12	102554875	102555075	+	1	NA	NA	NA	34	NM_007693	12652	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	0.090000	0.626866	-32(GTATATAAAAGC,-,0.00)
mm_93642.1	chr10	117339649	117339849	-	1	NA	NA	NA	37224	NM_001013391	432508	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.005000	0.398010	
mm_112582.1	chr13	13710129	13710329	+	1	NA	NA	NA	-73830	NM_001302997	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0.005000	0.442786	44(CACCCTAAAAAG,-,0.00),46(CCCTAAAAAGAC,+,0.00)
mm_169241.1	chr13	74522393	74522593	-	1	NA	NA	NA	-28543	NM_146231	235956	Mm.296909	NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.030000	0.512438	
mm_90442.1	chr10	127658125	127658325	+	1	NA	NA	NA	8478	NM_001122895	17937	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0.025000	0.542289	
mm_3336.1	chr1	137961374	137961574	+	1	NA	NA	NA	-4981	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.000000	0.398010	
mm_91008.1	chr10	14705387	14705587	-	1	NA	NA	NA	2	NM_025418	66201	Mm.227983	NM_025418	ENSMUSG00000019868	Vta1	1110001D18Rik|1110059P08Rik|AU040813|C85340|LIP5|SBP1	vesicle (multivesicular body) trafficking 1	protein-coding	0.115000	0.641791	
mm_112697.1	chr13	17695323	17695523	+	1	NA	NA	NA	10	NM_025479	66308	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	0.085000	0.562189	-36(GTGTATAAATAG,-,0.00)
mm_131518.1	chr16	17561917	17562117	+	1	NA	NA	NA	132	NM_001159561	18440	Mm.8032	NM_011028	ENSMUSG00000022758	P2rx6	P2rxl1|P2x6|P2xm	purinergic receptor P2X, ligand-gated ion channel, 6	protein-coding	0.020000	0.522388	
mm_78877.1	chr9	44486506	44486706	+	1	NA	NA	NA	-12530	NM_030256	80288	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.000000	0.611940	
mm_67724.1	chr7	90067962	90068162	-	1	NA	NA	NA	38903	NR_110364	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	0.010000	0.457711	
mm_39422.1	chr5	15934858	15935058	+	1	NA	NA	NA	267	NM_001110844	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.130000	0.746269	
mm_40070.1	chr5	34288557	34288757	+	1	NA	NA	NA	-333	NM_001015039	231125	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.115000	0.701493	
mm_100077.1	chr11	115463649	115463849	+	1	NA	NA	NA	1276	NM_001080934	217316	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	0.030000	0.532338	
mm_64160.1	chr7	141360119	141360319	+	1	NA	NA	NA	4891	NR_033532	320871	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0.020000	0.656716	
mm_138298.1	chr17	34630848	34631048	+	1	NA	NA	NA	1262	NM_030890	260297	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31	proline-rich transmembrane protein 1	protein-coding	0.105000	0.776119	
mm_6607.1	chr1	75374917	75375117	-	1	NA	NA	NA	-2	NR_037976	100503248	Mm.403916	NR_037976	ENSMUSG00000085653	Gm15179	OTTMUSG00000019417	predicted gene 15179	ncRNA	0.040000	0.621891	
mm_59944.1	chr7	30425231	30425431	+	1	NA	NA	NA	2027	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.025000	0.601990	
mm_112550.1	chr13	12408438	12408638	+	1	NA	NA	NA	13163	NM_144835	217995	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0.010000	0.477612	
mm_61065.1	chr7	50599091	50599291	+	1	NA	NA	NA	1	NM_172901	243996	Mm.443270	NM_172901	ENSMUSG00000084234	4933405O20Rik	-	RIKEN cDNA 4933405O20 gene	protein-coding	0.010000	0.407960	
mm_169777.1	chr16	10801211	10801411	+	1	NA	NA	NA	-4488	NM_013637	19118	Mm.42733	NM_013637	ENSMUSG00000022501	Prm1	Prm-1	protamine 1	protein-coding	0.035000	0.507463	
mm_109930.1	chr12	8916358	8916558	-	1	NA	NA	NA	-4849	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.000000	0.601990	
mm_102313.1	chr11	56040904	56041104	-	1	NA	NA	NA	-17	NM_153079	216749	Mm.213205	NM_153079	ENSMUSG00000037393	Nmur2	Nmu2r	neuromedin U receptor 2	protein-coding	0.030000	0.562189	
mm_64990.1	chr7	16916828	16917028	-	1	NA	NA	NA	7104	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.045000	0.532338	
mm_112725.1	chr13	19192424	19192624	+	1	NA	NA	NA	203289	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.492537	
mm_140430.1	chr17	88112002	88112202	+	1	NA	NA	NA	-13410	NM_001190356	225058	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.015000	0.517413	
mm_149900.1	chr19	25505739	25505939	+	1	NA	NA	NA	133	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.100000	0.681592	
mm_88686.1	chr10	80115702	80115902	+	1	NA	NA	NA	-1	NM_001301853	20869	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.175000	0.726368	
mm_133980.1	chr16	4541717	4541917	-	1	NA	NA	NA	17903	NM_031182	83383	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.120000	0.686567	
mm_2526.1	chr1	106861071	106861271	+	1	NA	NA	NA	-9	NM_009257	20724	Mm.268618	NM_009257	ENSMUSG00000067006	Serpinb5	1110036M19Rik|AI462524|AI646751|Maspin|PI-5|Spi7|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 5	protein-coding	0.020000	0.587065	
mm_55315.1	chr6	54992852	54993052	-	1	NA	NA	NA	-85	NM_026637	110175	Mm.294708	NM_026637	ENSMUSG00000002797	Ggct	A030007L17Rik|AA673177|Gctg|Ggc	gamma-glutamyl cyclotransferase	protein-coding	0.095000	0.636816	
mm_61007.1	chr7	49350217	49350417	+	1	NA	NA	NA	104128	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.010000	0.462687	
mm_162604.1	chr1	183221352	183221552	-	1	NA	NA	NA	77	NM_001278218	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0.150000	0.756219	
mm_87712.1	chr10	60042001	60042201	+	1	NA	NA	NA	38774	NM_001199187	69090	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0.010000	0.457711	
mm_110334.1	chr12	35642262	35642462	-	1	NA	NA	NA	43942	NR_045051	71581	Mm.100110	NR_045050		9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	0.010000	0.427861	
mm_71937.1	chr8	70315741	70315941	+	1	NA	NA	NA	66	NM_001163282	14559	Mm.258280	NM_008107	ENSMUSG00000087408	Gdf1	AI385651|Gdf-1	growth differentiation factor 1	protein-coding	0.120000	0.706468	
mm_64176.1	chr7	141457904	141458104	+	1	NA	NA	NA	2816	NM_001163689	66853	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0.025000	0.527363	
mm_18293.1	chr2	52676480	52676680	-	1	NA	NA	NA	29	NM_001037099	12298	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.060000	0.636816	
mm_33248.1	chr4	127109711	127109911	+	1	NA	NA	NA	-16232	NM_001099319	100039968	Mm.392655	NM_001099319	ENSMUSG00000070737	Tmem35b	Gm12942|OTTMUSG00000009332|Zmym6nb	transmembrane protein 35B	protein-coding	0.005000	0.338308	
mm_18712.1	chr2	72351330	72351530	-	1	NA	NA	NA	65729	NM_178084	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.000000	0.477612	
mm_111212.1	chr12	84400818	84401018	-	1	NA	NA	NA	16	NM_001286058	12499	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0.005000	0.467662	
mm_166270.1	chr5	90472016	90472216	+	1	NA	NA	NA	11246	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.005000	0.462687	33(TCTTTTAAACAC,+,0.00)
mm_5663.1	chr1	42693027	42693227	-	1	NA	NA	NA	1698	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.015000	0.388060	
mm_165999.1	chr4	115090901	115091101	+	1	NA	NA	NA	2293	NM_001164557	67182	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	0.005000	0.542289	
mm_158180.1	chrX	103981075	103981275	-	1	NA	NA	NA	109	NM_011276	19820	Mm.427762	NM_011276	ENSMUSG00000056537	Rlim	AL022832|AW743871|Ha1r|Rlim1|Rnf12	ring finger protein, LIM domain interacting	protein-coding	0.080000	0.616915	
mm_171603.1	chr4	148151979	148152179	-	1	NA	NA	NA	-50	NM_001163706	50762	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	0.050000	0.651741	
mm_82572.1	chr9	21091891	21092091	-	1	NA	NA	NA	-3	NM_027911	71766	Mm.196137	NM_027911	ENSMUSG00000010205	Raver1	1300006N24Rik|AA050359|mKIAA1978	ribonucleoprotein, PTB-binding 1	protein-coding	0.120000	0.681592	
mm_14754.1	chr2	144698149	144698349	+	1	NA	NA	NA	98296	NM_025314	66044	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	0.055000	0.537313	
mm_140632.1	chr17	12507258	12507458	-	1	NA	NA	NA	346	NM_011395	20519	Mm.99252	NM_011395	ENSMUSG00000023828	Slc22a3	EMT|Oct3|Orct3|Slca22a3	solute carrier family 22 (organic cation transporter), member 3	protein-coding	0.135000	0.761194	
mm_1308.1	chr1	64927635	64927835	+	1	NA	NA	NA	29089	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.010000	0.482587	
mm_12145.1	chr2	61804594	61804794	+	1	NA	NA	NA	241	NM_009322	21375	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.020000	0.497512	-33(ACTTTAAAACCC,+,0.00)
mm_131249.1	chr16	10545273	10545473	+	1	NA	NA	NA	34	NM_001204229	74374	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	0.115000	0.656716	
mm_144560.1	chr18	31759761	31759961	+	1	NA	NA	NA	37	NM_153515	225339	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0.055000	0.562189	
mm_55899.1	chr6	83575727	83575927	-	1	NA	NA	NA	-3323	NM_024239	70527	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0.015000	0.552239	
mm_83016.1	chr9	36784721	36784921	-	1	NA	NA	NA	12247	NM_007915	13663	Mm.4337	NM_007915	ENSMUSG00000062762	Ei24	AA536736|AI115355|PIG8	etoposide induced 2.4 mRNA	protein-coding	0.005000	0.378109	49(GACCTTAAAGGC,-,0.00)
mm_65790.1	chr7	28893886	28894086	-	1	NA	NA	NA	12330	NM_001110807	60594	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	0.015000	0.552239	
mm_54882.1	chr6	42709978	42710178	-	1	NA	NA	NA	-17019	NM_029930	77574	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding	0.035000	0.597015	
mm_14941.1	chr2	151572517	151572717	+	1	NA	NA	NA	-6	NM_145535	228765	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0.035000	0.621891	
mm_125451.1	chr15	51877373	51877573	+	1	NA	NA	NA	32	NM_030132	78581	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	0.070000	0.542289	
mm_157611.1	chrX	53776227	53776427	-	1	NA	NA	NA	67	NM_001009549	333473	Mm.327378	NM_001009549	ENSMUSG00000059334	Zfp36l3	AY661338	zinc finger protein 36, C3H type-like 3	protein-coding	0.035000	0.507463	
mm_72557.1	chr8	84073766	84073966	+	1	NA	NA	NA	7030	NM_009055	19724	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	0.025000	0.681592	
mm_25023.1	chr3	98109109	98109309	+	1	NA	NA	NA	-51425	NM_027665	71078	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.010000	0.417910	
mm_171223.1	chr3	60494804	60495004	-	1	NA	NA	NA	-6275	NM_001253711	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.035000	0.477612	11(CTCTTTAAAGAG,+,0.00),11(CTCTTTAAAGAG,-,0.00),13(CTTTAAAGAGGG,+,0.00)
mm_60503.1	chr7	44479319	44479519	+	1	NA	NA	NA	-5098	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.015000	0.492537	
mm_57736.1	chr6	128974809	128975009	-	1	NA	NA	NA	-14	NR_106107	102465757		NR_106107	ENSMUSG00000098359	Mir7649	mmu-mir-7649	microRNA 7649	ncRNA	0.000000	0.447761	
mm_141845.1	chr17	34743770	34743970	-	1	NA	NA	NA	27	NM_009780	12268	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	0.015000	0.587065	
mm_49489.1	chr6	29694088	29694288	+	1	NA	NA	NA	-26	NM_001301407	232670	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	0.120000	0.731343	
mm_6875.1	chr1	84340987	84341187	-	1	NA	NA	NA	-56442	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.005000	0.527363	
mm_84675.1	chr9	72077394	72077594	-	1	NA	NA	NA	33707	NM_001253862	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.005000	0.333333	-35(GCCTCTTAAAAA,-,0.00)
mm_157310.1	chrX	20950469	20950669	-	1	NA	NA	NA	39	NM_007922	13712	Mm.405823	NM_007922	ENSMUSG00000009406	Elk1	Elk-1	ELK1, member of ETS oncogene family	protein-coding	0.075000	0.681592	
mm_71956.1	chr8	70511458	70511658	+	1	NA	NA	NA	-1191	NM_019883	22186	Mm.297372	NM_019883	ENSMUSG00000090137	Uba52	D8Ertd21e|Gm1863|Rps27a|Ubb|Ubc	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding	0.015000	0.437811	
mm_131971.1	chr16	24879289	24879489	+	1	NA	NA	NA	157534	NM_001145954	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.005000	0.338308	
mm_86861.1	chr10	21992110	21992310	+	1	NA	NA	NA	-13	NM_001161849	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.015000	0.492537	
mm_131933.1	chr16	23612783	23612983	+	1	NA	NA	NA	2964	NM_023386	67775	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.020000	0.507463	
mm_140982.1	chr17	24719803	24720003	-	1	NA	NA	NA	62	NR_027900	73474	Mm.443320	NR_027900	ENSMUSG00000090101	Snhg9	1700072N11Rik	small nucleolar RNA host gene 9	ncRNA	0.125000	0.646766	
mm_5976.1	chr1	57969949	57970149	-	1	NA	NA	NA	35	NM_001159864	51960	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding	0.140000	0.746269	
mm_167660.1	chr9	71215274	71215474	+	1	NA	NA	NA	12	NR_110518	100041660	Mm.487231	NR_110518		Gm3458	-	predicted gene 3458	ncRNA	0.090000	0.691542	
mm_56582.1	chr6	106794129	106794329	-	1	NA	NA	NA	5858	NM_021449	58799	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.030000	0.457711	
mm_47530.1	chr5	124189593	124189793	-	1	NA	NA	NA	-2511	NM_001289472	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.010000	0.557214	
mm_159371.1	chr3	88775052	88775252	-	1	NA	NA	NA	-1905	NR_028359	100302730	Mm.482358	NR_028359		5830417I10Rik	3632445O20Rik|AA387005	gon-4-like pseudogene	pseudo	0.085000	0.582090	
mm_140842.1	chr17	23673756	23673956	-	1	NA	NA	NA	-86	NM_001008425	386612	Mm.328831	NM_001008425	ENSMUSG00000041319	Thoc6	F830014G06Rik|Wdr58	THO complex 6	protein-coding	0.095000	0.636816	
mm_36832.1	chr4	106316151	106316351	-	1	NA	NA	NA	38	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.165000	0.820896	
mm_56938.1	chr6	119921513	119921713	-	1	NA	NA	NA	18915	NM_001166381	19365	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.005000	0.388060	
mm_95898.1	chr11	58201261	58201461	+	1	NA	NA	NA	1805	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.040000	0.522388	
mm_1288.1	chr1	64235611	64235811	+	1	NA	NA	NA	-114322	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.010000	0.363184	
mm_157891.1	chrX	76128950	76129150	-	1	NA	NA	NA	-135256	NM_001013760	238829	Mm.292319	NM_001013760	ENSMUSG00000071738	Cldn34b3	EG238829|Gm4937	claudin 34B3	protein-coding	0.010000	0.512438	
mm_163666.1	chr13	79022516	79022716	+	1	NA	NA	NA	-823743	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.015000	0.497512	
mm_162385.1	chr1	74385191	74385391	+	1	NA	NA	NA	-6318	NM_153088	227292	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.020000	0.601990	
mm_155533.1	chrX	74303725	74303925	+	1	NA	NA	NA	-1187	NM_010273	14567	Mm.205830	NM_010273	ENSMUSG00000015291	Gdi1	GDIA|GDIalpha	guanosine diphosphate (GDP) dissociation inhibitor 1	protein-coding	0.010000	0.492537	
mm_76066.1	chr8	78436545	78436745	-	1	NA	NA	NA	7	NM_138944	18997	Mm.234261	NM_138944	ENSMUSG00000031688	Pou4f2	Brn-3.2|Brn-3b|Brn3b|Pou4f-rs1|mBrn3-3R	POU domain, class 4, transcription factor 2	protein-coding	0.060000	0.691542	
mm_24475.1	chr3	90692633	90692833	+	1	NA	NA	NA	2988	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.005000	0.432836	
mm_51775.1	chr6	88093834	88094034	+	1	NA	NA	NA	9461	NM_133933	103963	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	0.040000	0.537313	53(TCTTTTAAGGTA,+,0.00)
mm_79686.1	chr9	59951196	59951396	+	1	NA	NA	NA	2	NM_001101600	665389	Mm.335214	NM_001101600		Gm7616	EG665389	predicted gene 7616	protein-coding	0.005000	0.537313	
mm_10836.1	chr2	24919668	24919868	+	1	NA	NA	NA	-159	NM_001109686	77683	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	0.080000	0.621891	
mm_42766.1	chr5	121220288	121220488	+	1	NA	NA	NA	169	NM_181421	269700	Mm.184589	NM_181421	ENSMUSG00000042744	Gm15800	A130010L24|AU042671|BC019639|EG545802|OTTMUSG00000026283|mKIAA0614	predicted gene 15800	protein-coding	0.180000	0.820896	
mm_23248.1	chr3	51224453	51224653	+	1	NA	NA	NA	106	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.100000	0.666667	
mm_102544.1	chr11	61267349	61267549	-	1	NA	NA	NA	79	NM_001331115	11671	Mm.398221	NM_007437	ENSMUSG00000010025	Aldh3a2	AI194803|Ahd-3|Ahd-3r|Ahd3|Ahd3-r|Aldh4|Aldh4-r|FALDH	aldehyde dehydrogenase family 3, subfamily A2	protein-coding	0.055000	0.621891	
mm_18617.1	chr2	68471835	68472035	-	1	NA	NA	NA	46	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.135000	0.741294	
mm_138189.1	chr17	34269023	34269223	+	1	NA	NA	NA	5896	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.010000	0.532338	
mm_138161.1	chr17	34257850	34258050	+	1	NA	NA	NA	-5277	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.010000	0.502488	
mm_7519.1	chr1	124045447	124045647	-	1	NA	NA	NA	12	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.105000	0.686567	
mm_114791.1	chr13	89540609	89540809	+	1	NA	NA	NA	73	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.030000	0.542289	
mm_130748.1	chr15	101261456	101261656	-	1	NA	NA	NA	-5290	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.015000	0.467662	
mm_95891.1	chr11	58183706	58183906	+	1	NA	NA	NA	-37	NM_001135115	631323	Mm.394103	NM_001135115		Gm12250	Irgb10|OTTMUSG00000005723	predicted gene 12250	protein-coding	0.015000	0.472637	
mm_77158.1	chr8	111687040	111687240	-	1	NA	NA	NA	2534	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.040000	0.621891	
mm_97124.1	chr11	74925752	74925952	+	1	NA	NA	NA	-20	NM_001002764	103677	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.125000	0.706468	
mm_39905.1	chr5	31251817	31252017	+	1	NA	NA	NA	211	NM_027221	69815	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	0.075000	0.681592	
mm_78118.1	chr9	20643292	20643492	+	1	NA	NA	NA	74	NM_025401	66177	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.035000	0.527363	
mm_73937.1	chr8	120042867	120043067	+	1	NA	NA	NA	50529	NM_001310635	78892	Mm.264680	NM_030209	ENSMUSG00000031825	Crispld2	1810049K24Rik|Lcrisp2|Lgl1|coffeecrisp	cysteine-rich secretory protein LCCL domain containing 2	protein-coding	0.010000	0.582090	
mm_20235.1	chr2	126151889	126152089	-	1	NA	NA	NA	15	NM_029455	75823	Mm.444732	NM_029455	ENSMUSG00000027209	Fam227b	4930525F21Rik	family with sequence similarity 227, member B	protein-coding	0.070000	0.597015	
mm_56774.1	chr6	116628880	116629080	-	1	NA	NA	NA	19	NM_026057	67255	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0.125000	0.736318	
mm_22031.1	chr2	168068179	168068379	-	1	NA	NA	NA	-12725	NM_021409	58220	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0.010000	0.497512	
mm_38509.1	chr4	141139704	141139904	-	1	NA	NA	NA	-8	NR_102343	213491	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0.090000	0.701493	
mm_49533.1	chr6	30172765	30172965	+	1	NA	NA	NA	1260	NR_126540	101447999		NR_126540		Mirc35hg	-	microRNA cluster 35, host gene	ncRNA	0.040000	0.572139	
mm_25973.1	chr3	132949317	132949517	+	1	NA	NA	NA	397	NM_001287103	114249	Mm.279310	NM_033525	ENSMUSG00000040998	Npnt	1110009H02Rik|AA682063|AI314031|Nctn|POEM	nephronectin	protein-coding	0.050000	0.626866	
mm_155760.1	chrX	96167812	96168012	+	1	NA	NA	NA	71867	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.000000	0.388060	
mm_76191.1	chr8	82402791	82402991	-	1	NA	NA	NA	-305	NM_008357	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.030000	0.582090	
mm_12151.1	chr2	61812412	61812612	+	1	NA	NA	NA	8059	NM_009322	21375	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.080000	0.601990	
mm_57531.1	chr6	126535300	126535500	-	1	NA	NA	NA	155	NM_145983	16493	Mm.222831	NM_145983	ENSMUSG00000045534	Kcna5	Kv1.5	potassium voltage-gated channel, shaker-related subfamily, member 5	protein-coding	0.015000	0.631841	
mm_167700.1	chr9	90054378	90054578	+	1	NA	NA	NA	211	NM_001312649	13036	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.045000	0.646766	
mm_120471.1	chr14	65973287	65973487	+	1	NA	NA	NA	4904	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.020000	0.477612	
mm_171020.1	chr2	83983849	83984049	+	1	NA	NA	NA	-42723	NM_027964	71861	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.050000	0.442786	
mm_49355.1	chr6	22006322	22006522	+	1	NA	NA	NA	20512	NM_001081351	214642	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.010000	0.268657	
mm_158835.1	chrX	168672395	168672595	-	1	NA	NA	NA	1407	NM_010832	17692	Mm.24248	NM_010832	ENSMUSG00000031358	Msl3	AU018931|Msl31|Msl3l1	male-specific lethal 3 homolog (Drosophila)	protein-coding	0.025000	0.432836	
mm_69576.1	chr7	135700904	135701104	-	1	NA	NA	NA	15375	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.020000	0.383085	
mm_33907.1	chr4	136310868	136311068	+	1	NA	NA	NA	26	NM_001277123	74326	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	0.130000	0.676617	
mm_129123.1	chr15	76124557	76124757	-	1	NA	NA	NA	1899	NM_001142968	271278	Mm.205253	NM_198172	ENSMUSG00000044361	BC024139	6230424I18Rik	cDNA sequence BC024139	protein-coding	0.015000	0.562189	
mm_38551.1	chr4	141605935	141606135	-	1	NA	NA	NA	17	NM_133754	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.040000	0.562189	
mm_42796.1	chr5	121686529	121686729	+	1	NA	NA	NA	-24980	NM_009125	20239	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.025000	0.422886	
mm_84853.1	chr9	78481586	78481786	-	1	NA	NA	NA	38	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.105000	0.661692	-18(CGGTATATAAGT,-,0.00)
mm_160953.1	chr11	97775954	97776154	-	1	NA	NA	NA	-136	NM_028156	72215	Mm.269049	NM_028156	ENSMUSG00000018543	1700001P01Rik	-	RIKEN cDNA 1700001P01 gene	protein-coding	0.020000	0.447761	
mm_41874.1	chr5	104571580	104571780	+	1	NA	NA	NA	8	NM_001346671	69623	Mm.69919	NM_027142		Zfp33b	2310012P17Rik	zinc finger protein 33B	protein-coding	0.030000	0.502488	
mm_89006.1	chr10	81627617	81627817	+	1	NA	NA	NA	-109	NM_181586	50721	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0.045000	0.567164	
mm_91948.1	chr10	60938033	60938233	-	1	NA	NA	NA	-1	NR_033616	73616	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	0.010000	0.507463	
mm_100901.1	chr11	6172965	6173165	-	1	NA	NA	NA	266	NR_029471	100042173	Mm.441799	NR_029471		Rps15a-ps6	Gm11968|OTTMUSG00000005107	ribosomal protein S15A, pseudogene 6	pseudo	0.025000	0.462687	
mm_26615.1	chr3	152384976	152385176	+	1	NA	NA	NA	-10397	NM_001346655	108946	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.000000	0.388060	
mm_119791.1	chr14	54193870	54194070	+	1	NA	NA	NA	59959	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.477612	
mm_69338.1	chr7	129648886	129649086	-	1	NA	NA	NA	57123	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.020000	0.502488	
mm_42115.1	chr5	110810217	110810417	+	1	NA	NA	NA	-236	NM_001347394	22241	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	0.030000	0.532338	
mm_107627.1	chr12	51691116	51691316	+	1	NA	NA	NA	250	NM_001329698	11782	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0.110000	0.736318	
mm_135339.1	chr16	42340488	42340688	-	1	NA	NA	NA	63	NM_008083	14432	Mm.1222	NM_008083	ENSMUSG00000047261	Gap43	B-50|Basp2|GAP-43	growth associated protein 43	protein-coding	0.030000	0.597015	
mm_105333.1	chr11	102946613	102946813	-	1	NA	NA	NA	-252	NM_011795	23829	Mm.57154	NM_011795	ENSMUSG00000045532	C1ql1	C1qrf|CRF|CTRP14|gliacolin	complement component 1, q subcomponent-like 1	protein-coding	0.125000	0.791045	
mm_39505.1	chr5	21202635	21202835	+	1	NA	NA	NA	16468	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.000000	0.313433	
mm_24795.1	chr3	95545431	95545631	+	1	NA	NA	NA	-14146	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.040000	0.532338	
mm_108204.1	chr12	76902119	76902319	+	1	NA	NA	NA	60029	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.010000	0.467662	-57(GAGTTTATAGGG,-,0.00),-55(GTTTATAGGGGC,+,0.00)
mm_73770.1	chr8	116126822	116127022	+	1	NA	NA	NA	-378093	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.005000	0.482587	
mm_130537.1	chr15	98937271	98937471	-	1	NA	NA	NA	-2981	NM_011654	22143	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.015000	0.532338	
mm_157769.1	chrX	73716104	73716304	-	1	NA	NA	NA	0	NM_012060	27061	Mm.17	NM_012060	ENSMUSG00000002015	Bcap31	Bap31	B cell receptor associated protein 31	protein-coding	0.105000	0.671642	
mm_123686.1	chr14	69624173	69624373	-	1	NA	NA	NA	14797	NM_033325	94352	Mm.116714	NM_033325	ENSMUSG00000034205	Loxl2	1110004B06Rik|4930526G11Rik|9430067E15Rik	lysyl oxidase-like 2	protein-coding	0.005000	0.422886	
mm_99613.1	chr11	104584203	104584403	+	1	NA	NA	NA	-22105	NR_130177	100415912	Mm.446786	NR_130177		Gm11665	Gm11664|OTTMUSG00000003182|OTTMUSG00000003183	predicted gene 11665	ncRNA	0.025000	0.517413	
mm_70085.1	chr7	142654258	142654458	-	1	NA	NA	NA	638	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.065000	0.616915	
mm_103577.1	chr11	78100755	78100955	-	1	NA	NA	NA	6182	NM_145430	216971	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0.035000	0.552239	
mm_161879.1	chr18	37442289	37442489	+	1	NA	NA	NA	-128	NM_053138	93884	Mm.196700	NM_053138	ENSMUSG00000047307	Pcdhb13	Pcdbh6|PcdhbM	protocadherin beta 13	protein-coding	0.040000	0.462687	
mm_95500.1	chr11	51883997	51884197	+	1	NA	NA	NA	-26616	NM_199299	76901	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.000000	0.517413	
mm_111754.1	chr12	103951299	103951499	-	1	NA	NA	NA	5498	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	0.000000	0.512438	
mm_108121.1	chr12	75818281	75818481	+	1	NA	NA	NA	63	NM_001005510	319565	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0.155000	0.756219	
mm_103265.1	chr11	71202768	71202968	-	1	NA	NA	NA	-1412	NM_001162414	637515	Mm.390402	NM_001039680	ENSMUSG00000070390	Nlrp1b	ENSMUSG00000070390|Nalp1b|OTTMUSG00000006087|OTTMUSG00000006089	NLR family, pyrin domain containing 1B	protein-coding	0.015000	0.442786	
mm_51431.1	chr6	78466676	78466876	+	1	NA	NA	NA	2098	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.005000	0.432836	
mm_165571.1	chr3	19985517	19985717	+	1	NA	NA	NA	28563	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.010000	0.388060	
mm_152623.1	chr19	12465175	12465375	-	1	NA	NA	NA	4496	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.000000	0.363184	
mm_100009.1	chr11	114852087	114852287	+	1	NA	NA	NA	157	NM_147217	70355	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.090000	0.741294	
mm_14157.1	chr2	126588002	126588202	+	1	NA	NA	NA	30576	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.010000	0.303483	
mm_23995.1	chr3	86539750	86539950	+	1	NA	NA	NA	8433	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.010000	0.492537	-57(CTGTATAAAAGA,-,0.00)
mm_150393.1	chr19	36409667	36409867	+	1	NA	NA	NA	30700	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.130000	0.771144	
mm_101251.1	chr11	20770655	20770855	-	1	NA	NA	NA	-29199	NM_181411	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.010000	0.472637	-95(TCCTTAATAGTC,+,0.00)
mm_127590.1	chr15	102376864	102377064	+	1	NA	NA	NA	-10693	NM_130458	170574	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	0.130000	0.781095	
mm_77290.1	chr8	116944015	116944215	-	1	NA	NA	NA	722	NM_177700	234776	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	0.040000	0.562189	
mm_45831.1	chr5	87694578	87694778	-	1	NA	NA	NA	4747	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.502488	
mm_150940.1	chr19	46306036	46306236	+	1	NA	NA	NA	206	NM_001177370	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.015000	0.572139	
mm_95610.1	chr11	53457137	53457337	+	1	NA	NA	NA	32	NM_027917	71774	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	0.100000	0.731343	
mm_164939.1	chr18	90418918	90419118	+	1	NA	NA	NA	-91136	NM_198295	67988	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.010000	0.343284	
mm_9951.1	chr1	190979114	190979314	-	1	NA	NA	NA	82	NR_027352	226841	Mm.22856	NM_144879	ENSMUSG00000037568	Vash2	B130052G07Rik	vasohibin 2	protein-coding	0.090000	0.631841	
mm_30754.1	chr4	15022443	15022643	+	1	NA	NA	NA	91902	NM_001243100	100038514	Mm.331495	NM_001243100		Gm11837	OTTMUSG00000004551	predicted gene 11837	protein-coding	0.005000	0.373134	-53(CCTTATCAAGTC,+,0.00)
mm_54431.1	chr6	34171941	34172141	-	1	NA	NA	NA	5013	NM_021435	58246	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0.015000	0.432836	
mm_148064.1	chr18	72258678	72258878	-	1	NA	NA	NA	92291	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.005000	0.398010	
mm_6866.1	chr1	84278826	84279026	-	1	NA	NA	NA	5719	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.010000	0.537313	
mm_919.1	chr1	55088229	55088429	+	1	NA	NA	NA	181	NM_008303	15528	Mm.215667	NM_008303	ENSMUSG00000073676	Hspe1	10kDa|Hsp10|mt-cpn10	heat shock protein 1 (chaperonin 10)	protein-coding	0.130000	0.711443	
mm_73789.1	chr8	117256644	117256844	+	1	NA	NA	NA	-275	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.200000	0.815920	
mm_166607.1	chr6	69284242	69284442	-	1	NA	NA	NA	42832	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.368159	
mm_86434.1	chr10	3863785	3863985	+	1	NA	NA	NA	-8782	NM_001033253	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.025000	0.532338	
mm_169213.1	chr13	66588957	66589157	-	1	NA	NA	NA	-147939	NM_001290196	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.005000	0.522388	
mm_169114.1	chr13	49544338	49544538	+	1	NA	NA	NA	-5	NM_001172481	66695	Mm.383216	NM_025711	ENSMUSG00000021388	Aspn	4631401G09Rik|AA986886|Plap1|Slrr1c	asporin	protein-coding	0.010000	0.363184	
mm_32349.1	chr4	104913467	104913667	+	1	NA	NA	NA	111	NM_001285952	242594	Mm.65181	NM_001162980	ENSMUSG00000078612	1700024P16Rik	C1orf168|Gm620	RIKEN cDNA 1700024P16 gene	protein-coding	0.045000	0.671642	
mm_91845.1	chr10	58447304	58447504	-	1	NA	NA	NA	552	NM_011240	19386	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0.085000	0.636816	
mm_129117.1	chr15	76091411	76091611	-	1	NA	NA	NA	-1498	NM_144847	223649	Mm.101946	NM_144847	ENSMUSG00000075590	Nrbp2	BC011468	nuclear receptor binding protein 2	protein-coding	0.145000	0.796020	
mm_139504.1	chr17	56303347	56303547	+	1	NA	NA	NA	110	NM_001111079	18140	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	0.060000	0.587065	
mm_161033.1	chr12	17176985	17177185	-	1	NA	NA	NA	-197	NM_201531	382571	Mm.40173	NM_201531	ENSMUSG00000051726	Kcnf1	Gm1182|Kv5.1	potassium voltage-gated channel, subfamily F, member 1	protein-coding	0.000000	0.482587	
mm_135045.1	chr16	33123957	33124157	-	1	NA	NA	NA	18696	NR_035469	100316698		NR_035469	ENSMUSG00000088860	Mir1947	mir-1947|mmu-mir-1947	microRNA 1947	ncRNA	0.035000	0.517413	
mm_80454.1	chr9	77982593	77982793	+	1	NA	NA	NA	65328	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.040000	0.552239	
mm_57108.1	chr6	122592954	122593154	-	1	NA	NA	NA	9390	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.005000	0.497512	
mm_118961.1	chr14	27429873	27430073	+	1	NA	NA	NA	1126	NM_001114879	218850	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0.020000	0.343284	
mm_110931.1	chr12	76369725	76369925	-	1	NA	NA	NA	-265	NM_028356	109929	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0.070000	0.572139	
mm_61248.1	chr7	65803920	65804120	+	1	NA	NA	NA	-32	NR_045301	100503969	Mm.383527	NR_045301		1810008I18Rik	-	RIKEN cDNA 1810008I18 gene	ncRNA	0.005000	0.512438	
mm_61090.1	chr7	51628576	51628776	+	1	NA	NA	NA	6846	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.015000	0.373134	
mm_155732.1	chrX	96165868	96166068	+	1	NA	NA	NA	69923	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.015000	0.537313	
mm_55059.1	chr6	49047813	49048013	-	1	NA	NA	NA	11395	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.025000	0.512438	
mm_44008.1	chr5	147076094	147076294	+	1	NA	NA	NA	378	NM_080795	140887	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	0.045000	0.572139	59(GTCTTGAAAAGC,-,0.00)
mm_50227.1	chr6	42350684	42350884	+	1	NA	NA	NA	956	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.040000	0.562189	
mm_152122.1	chr19	6987593	6987793	-	1	NA	NA	NA	-42	NM_011697	22340	Mm.15607	NM_011697	ENSMUSG00000024962	Vegfb	VEGF-B|Vrf	vascular endothelial growth factor B	protein-coding	0.115000	0.771144	
mm_109795.1	chr12	3264633	3264833	-	1	NA	NA	NA	28942	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.005000	0.348259	
mm_111822.1	chr12	106716201	106716401	-	1	NA	NA	NA	23	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.030000	0.512438	
mm_148373.1	chr18	89769419	89769619	-	1	NA	NA	NA	-383	NM_001039173	623279	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0.130000	0.786070	
mm_6040.1	chr1	59670721	59670921	-	1	NA	NA	NA	13	NM_009460	22218	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0.085000	0.592040	
mm_33731.1	chr4	134098761	134098961	+	1	NA	NA	NA	-3722	NR_045571	67586	Mm.282029	NM_026257	ENSMUSG00000012126	Ubxn11	4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5	UBX domain protein 11	protein-coding	0.025000	0.562189	
mm_96913.1	chr11	70459873	70460073	+	1	NA	NA	NA	11	NM_023158	66102	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.025000	0.552239	
mm_132424.1	chr16	35580737	35580937	+	1	NA	NA	NA	39475	NM_013661	20357	Mm.42015	NM_013661	ENSMUSG00000052133	Sema5b	AI893641|SemG|Semag|mKIAA1445	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	protein-coding	0.000000	0.447761	
mm_128281.1	chr15	37004037	37004237	-	1	NA	NA	NA	3265	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.010000	0.422886	85(CCTTTTATACAT,+,0.00)
mm_36740.1	chr4	99829051	99829251	-	1	NA	NA	NA	-33	NM_026348	67733	Mm.257094	NM_026348	ENSMUSG00000028549	Itgb3bp	4930471O16Rik|AU022583	integrin beta 3 binding protein (beta3-endonexin)	protein-coding	0.085000	0.552239	1(GGCTTTTTATGC,-,0.00)
mm_124437.1	chr14	118693692	118693892	-	1	NA	NA	NA	12427	NM_001163676	239273	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.015000	0.442786	
mm_159565.1	chr4	109235634	109235834	+	1	NA	NA	NA	102	NM_001033226	108802	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	0.020000	0.398010	
mm_16462.1	chr2	180600940	180601140	+	1	NA	NA	NA	2818	NM_009936	12841	Mm.141312	NM_009936	ENSMUSG00000027570	Col9a3	AV006866	collagen, type IX, alpha 3	protein-coding	0.015000	0.532338	
mm_97343.1	chr11	77462332	77462532	+	1	NA	NA	NA	-1481	NM_139129	216961	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.115000	0.636816	
mm_170621.1	chr19	6673697	6673897	+	1	NA	NA	NA	-130727	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.025000	0.502488	-30(TTCTATAAAAGT,-,0.00)
mm_134513.1	chr16	19200140	19200340	-	1	NA	NA	NA	86501	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.010000	0.482587	
mm_89092.1	chr10	84308734	84308934	+	1	NA	NA	NA	131637	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.035000	0.527363	
mm_142224.1	chr17	37480612	37480812	-	1	NA	NA	NA	2817	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.000000	0.383085	
mm_110290.1	chr12	32185104	32185304	-	1	NA	NA	NA	23134	NM_001146201	30955	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphoinositide-3-kinase, catalytic, gamma polypeptide	protein-coding	0.010000	0.278607	
mm_153295.1	chr19	37697521	37697721	-	1	NA	NA	NA	-187	NM_007811	13082	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0.085000	0.646766	
mm_14604.1	chr2	136501888	136502088	+	1	NA	NA	NA	-30333	NM_175667	319196	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0.005000	0.378109	
mm_10929.1	chr2	25457551	25457751	+	1	NA	NA	NA	808	NM_027085	69454	Mm.44194	NM_027085	ENSMUSG00000015093	Clic3	2300003G24Rik	chloride intracellular channel 3	protein-coding	0.015000	0.616915	
mm_133175.1	chr16	72027614	72027814	+	1	NA	NA	NA	206613	NR_131116	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0.030000	0.447761	
mm_90491.1	chr10	128033168	128033368	+	1	NA	NA	NA	-2078	NM_013608	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.005000	0.517413	
mm_73856.1	chr8	118283513	118283713	+	1	NA	NA	NA	2	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.055000	0.532338	
mm_29234.1	chr3	107214162	107214362	-	1	NA	NA	NA	7470	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.005000	0.562189	
mm_18703.1	chr2	71750214	71750414	-	1	NA	NA	NA	30897	NR_037979	381371	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	0.035000	0.512438	
mm_2890.1	chr1	131867523	131867723	+	1	NA	NA	NA	346	NM_144875	226422	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	0.045000	0.537313	
mm_78592.1	chr9	37385850	37386050	+	1	NA	NA	NA	-15947	NM_028783	74144	Mm.485070	NM_028783	ENSMUSG00000032125	Robo4	1200012D01Rik|AI593217	roundabout guidance receptor 4	protein-coding	0.020000	0.512438	
mm_20379.1	chr2	128687277	128687477	-	1	NA	NA	NA	18	NM_008569	17222	Mm.277408	NM_008569	ENSMUSG00000014355	Anapc1	2610021O03Rik|AI047775|AI853536|AW547281|Apc1|Mcpr|tsg24	anaphase promoting complex subunit 1	protein-coding	0.070000	0.611940	
mm_36640.1	chr4	93481273	93481473	-	1	NA	NA	NA	-145862	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.000000	0.437811	
mm_57502.1	chr6	125380415	125380615	-	1	NA	NA	NA	-11	NM_198604	213522	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.075000	0.711443	
mm_171191.1	chr3	44668023	44668223	+	1	NA	NA	NA	710137	NR_045172	72511	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.005000	0.383085	
mm_94976.1	chr11	31545796	31545996	+	1	NA	NA	NA	125966	NM_001024919	69556	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.025000	0.547264	
mm_170521.1	chr19	32466469	32466669	-	1	NA	NA	NA	-19200	NM_010799	17330	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0.020000	0.398010	
mm_129682.1	chr15	81399973	81400173	-	1	NA	NA	NA	-65	NM_001347075	321003	Mm.390833	NM_177310	ENSMUSG00000022401	Xpnpep3	APP3|E430012M05Rik	X-prolyl aminopeptidase 3, mitochondrial	protein-coding	0.105000	0.641791	
mm_65623.1	chr7	27541617	27541817	-	1	NA	NA	NA	11501	NM_011116	18807	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.035000	0.582090	
mm_77283.1	chr8	116732969	116733169	-	1	NA	NA	NA	-78	NM_029441	75796	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.160000	0.681592	
mm_144457.1	chr18	23415089	23415289	+	1	NA	NA	NA	-220	NM_010087	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.020000	0.492537	
mm_95008.1	chr11	31928027	31928227	+	1	NA	NA	NA	-37506	NM_026262	67592	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	0.010000	0.402985	-51(TCCTTTATAGGA,+,0.00)
mm_22935.1	chr3	31163783	31163983	+	1	NA	NA	NA	13963	NM_008770	18417	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.025000	0.388060	
mm_134891.1	chr16	29544761	29544961	-	1	NA	NA	NA	3	NM_001164613	224079	Mm.54954	NM_172613	ENSMUSG00000038094	Atp13a4	4631413J11Rik|4832416L12|9330174J19Rik	ATPase type 13A4	protein-coding	0.030000	0.507463	
mm_69657.1	chr7	139978576	139978776	-	1	NA	NA	NA	79	NM_001347614	381933	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0.070000	0.631841	
mm_39338.1	chr5	8808001	8808201	+	1	NA	NA	NA	9954	NM_011075	18669	Mm.146649	NM_011075	ENSMUSG00000028970	Abcb1b	Abcb1|Mdr1|Mdr1b|Pgy-1|Pgy1|mdr	ATP-binding cassette, sub-family B (MDR/TAP), member 1B	protein-coding	0.010000	0.437811	
mm_17901.1	chr2	35182210	35182410	-	1	NA	NA	NA	18810	NM_026697	68365	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.015000	0.527363	
mm_96387.1	chr11	67248464	67248664	+	1	NA	NA	NA	10752	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.020000	0.527363	
mm_45445.1	chr5	67427638	67427838	-	1	NA	NA	NA	61	NM_001164806	666938	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.125000	0.716418	
mm_78732.1	chr9	41581241	41581441	+	1	NA	NA	NA	88	NR_015483	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.040000	0.537313	
mm_70576.1	chr8	13165820	13166020	+	1	NA	NA	NA	6759	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.020000	0.492537	
mm_80259.1	chr9	72807243	72807443	+	1	NA	NA	NA	69	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.150000	0.786070	
mm_10368.1	chr2	11713136	11713336	+	1	NA	NA	NA	7524	NM_001271500	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.005000	0.417910	5(TTTTCTAAAAGG,-,0.00)
mm_6038.1	chr1	59670287	59670487	-	1	NA	NA	NA	447	NM_009460	22218	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0.100000	0.691542	
mm_104577.1	chr11	96955838	96956038	-	1	NA	NA	NA	11792	NR_003293	319371	Mm.436865	NR_003293	ENSMUSG00000078700	D030028A08Rik	-	RIKEN cDNA D030028A08 gene	ncRNA	0.050000	0.626866	
mm_141394.1	chr17	29237702	29237902	-	1	NA	NA	NA	-12	NM_153166	240058	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	0.100000	0.706468	
mm_127034.1	chr15	96460117	96460317	+	1	NA	NA	NA	626	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.120000	0.716418	
mm_131235.1	chr16	10480033	10480233	+	1	NA	NA	NA	61	NM_001302618	12265	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.010000	0.597015	
mm_92617.1	chr10	80141272	80141472	-	1	NA	NA	NA	-903	NM_001347092	66043	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0.070000	0.641791	
mm_156290.1	chrX	136837379	136837579	+	1	NA	NA	NA	14733	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.000000	0.318408	
mm_151376.1	chr19	55938393	55938593	+	1	NA	NA	NA	43172	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.015000	0.407960	-30(TCATTTAAAGAG,+,0.00)
mm_139622.1	chr17	57362601	57362801	+	1	NA	NA	NA	4015	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.010000	0.393035	
mm_155498.1	chrX	73774305	73774505	+	1	NA	NA	NA	0	NM_019684	56504	Mm.111904	NM_019684	ENSMUSG00000002007	Srpk3	Mssk1|Stk23	serine/arginine-rich protein specific kinase 3	protein-coding	0.035000	0.582090	-34(AGCTATAAATGC,-,0.00)
mm_92845.1	chr10	81509001	81509201	-	1	NA	NA	NA	-8964	NM_010102	13611	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0.010000	0.537313	
mm_43901.1	chr5	144244323	144244523	+	1	NA	NA	NA	-14	NM_001163709	55950	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.015000	0.557214	
mm_98041.1	chr11	85492626	85492826	+	1	NA	NA	NA	139562	NM_001166643	192197	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.015000	0.338308	46(CCTTTTCAAGTG,+,0.00)
mm_64421.1	chr7	142576862	142577062	+	1	NA	NA	NA	185	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.045000	0.626866	
mm_27562.1	chr3	58577179	58577379	-	1	NA	NA	NA	621	NM_001040396	69227	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	0.075000	0.532338	
mm_13795.1	chr2	118901358	118901558	+	1	NA	NA	NA	-157	NM_001045523	228536	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0.145000	0.776119	
mm_17418.1	chr2	27404626	27404826	-	1	NA	NA	NA	22882	NR_133905	22325	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.005000	0.472637	
mm_19107.1	chr2	79454889	79455089	-	1	NA	NA	NA	1647	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.030000	0.537313	
mm_150405.1	chr19	36834156	36834356	+	1	NA	NA	NA	24	NM_001163635	74493	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0.175000	0.776119	
mm_79195.1	chr9	48494994	48495194	+	1	NA	NA	NA	236	NM_001326355	67010	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	0.095000	0.646766	
mm_159573.1	chr4	115518202	115518402	+	1	NA	NA	NA	15	NM_010011	13117	Mm.10742	NM_010011	ENSMUSG00000066072	Cyp4a10	AI647584|Cyp4a|D4Rp1|Msp-3|RP1	cytochrome P450, family 4, subfamily a, polypeptide 10	protein-coding	0.015000	0.532338	
mm_130982.1	chr15	103344682	103344882	-	1	NA	NA	NA	-4696	NM_013866	29813	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.010000	0.537313	
mm_109007.1	chr12	103336794	103336994	+	1	NA	NA	NA	19107	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.015000	0.542289	
mm_159246.1	chr2	151476053	151476253	-	1	NA	NA	NA	-2	NM_198655	381393	Mm.280614	NM_198655	ENSMUSG00000061525	4921509C19Rik	Gm1005	RIKEN cDNA 4921509C19 gene	protein-coding	0.025000	0.482587	
mm_99614.1	chr11	104586189	104586389	+	1	NA	NA	NA	-21711	NM_016780	16416	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding	0.020000	0.442786	
mm_43806.1	chr5	142903676	142903876	+	1	NA	NA	NA	2978	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.035000	0.427861	
mm_155418.1	chrX	73490823	73491023	+	1	NA	NA	NA	7322	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.015000	0.562189	
mm_9112.1	chr1	170174689	170174889	-	1	NA	NA	NA	175	NM_001305046	107652	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.150000	0.751244	
mm_115187.1	chr13	108471767	108471967	+	1	NA	NA	NA	155530	NM_178683	218581	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.005000	0.333333	
mm_99193.1	chr11	101009397	101009597	+	1	NA	NA	NA	45	NM_001243051	11975	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0.120000	0.676617	
mm_9908.1	chr1	187215366	187215566	-	1	NA	NA	NA	-20	NM_028848	74717	Mm.250430	NM_028848	ENSMUSG00000026611	Spata17	1700065F16Rik|4930504I07Rik|4930513F16Rik|MSRG-11	spermatogenesis associated 17	protein-coding	0.070000	0.562189	
mm_111549.1	chr12	101016035	101016235	-	1	NA	NA	NA	5633	NR_035421	100316805		NR_035421	ENSMUSG00000080575	Mir1190	Mirn1190|mmu-mir-1190	microRNA 1190	ncRNA	0.005000	0.562189	
mm_48896.1	chr5	151651127	151651327	-	1	NA	NA	NA	-19	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	0.095000	0.626866	
mm_145034.1	chr18	39353462	39353662	+	1	NA	NA	NA	133683	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.000000	0.358209	
mm_161148.1	chr13	22852372	22852572	-	1	NA	NA	NA	23	NM_134243	171277	Mm.377228	NM_134243	ENSMUSG00000063998	Vmn1r211	V1rh20	vomeronasal 1 receptor 211	protein-coding	0.005000	0.432836	
mm_87383.1	chr10	44730912	44731112	+	1	NA	NA	NA	-272264	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.020000	0.517413	
mm_158815.1	chrX	167308203	167308403	-	1	NA	NA	NA	22268	NM_001290757	170743	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	0.015000	0.452736	
mm_173207.1	chrX	69938424	69938624	-	1	NA	NA	NA	-6757	NM_029316	75509	Mm.233475	NM_029316	ENSMUSG00000059690	1700020N15Rik	-	RIKEN cDNA 1700020N15 gene	protein-coding	0.035000	0.497512	
mm_86069.1	chr9	114775351	114775551	-	1	NA	NA	NA	6542	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.010000	0.626866	
mm_43429.1	chr5	136059971	136060171	+	1	NA	NA	NA	2804	NM_027158	69665	Mm.75713	NM_027158	ENSMUSG00000006143	Upk3bl	2310043J07Rik	uroplakin 3B-like	protein-coding	0.055000	0.592040	
mm_73127.1	chr8	94838307	94838507	+	1	NA	NA	NA	-10	NM_026452	67914	Mm.169234	NM_026452	ENSMUSG00000031782	Coq9	2310005O14Rik|C78387	coenzyme Q9	protein-coding	0.125000	0.706468	
mm_127567.1	chr15	102243393	102243593	+	1	NA	NA	NA	3007	NM_001042727	19411	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.025000	0.626866	
mm_123311.1	chr14	62346929	62347129	-	1	NA	NA	NA	14924	NM_026001	67153	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	0.020000	0.472637	
mm_86749.1	chr10	19506152	19506352	+	1	NA	NA	NA	-85697	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.010000	0.422886	
mm_46091.1	chr5	92346976	92347176	-	1	NA	NA	NA	1813	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.025000	0.542289	
mm_112514.1	chr13	9093789	9093989	+	1	NA	NA	NA	8	NM_172585	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.105000	0.681592	
mm_6582.1	chr1	75219817	75220017	-	1	NA	NA	NA	-623	NM_001313724	22145	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	0.080000	0.616915	
mm_134591.1	chr16	20426281	20426481	-	1	NA	NA	NA	13	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.100000	0.626866	48(CGCTATAAAGGC,-,0.00)
mm_49983.1	chr6	41032951	41033151	+	1	NA	NA	NA	2458	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.487562	
mm_124807.1	chr15	8837975	8838175	+	1	NA	NA	NA	-127268	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.000000	0.368159	
mm_138171.1	chr17	34264708	34264908	+	1	NA	NA	NA	1581	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.125000	0.646766	
mm_6370.1	chr1	72284126	72284326	-	1	NA	NA	NA	88	NM_023523	111175	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding	0.040000	0.567164	
mm_22723.1	chr3	19560155	19560355	+	1	NA	NA	NA	29008	NM_001163537	66326	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0.015000	0.467662	-22(GAGTTGAAAAGG,-,0.00)
mm_167415.1	chr8	107846746	107846946	+	1	NA	NA	NA	-258364	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.005000	0.283582	
mm_51506.1	chr6	83135751	83135951	+	1	NA	NA	NA	43	NM_001136227	20166	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0.080000	0.706468	
mm_93525.1	chr10	115314820	115315020	-	1	NA	NA	NA	671	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.060000	0.572139	
mm_16927.1	chr2	13793641	13793841	-	1	NA	NA	NA	-221	NM_145838	241230	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	0.130000	0.706468	
mm_144857.1	chr18	36679484	36679684	+	1	NA	NA	NA	-218	NM_146085	225372	Mm.89673	NM_146085	ENSMUSG00000006050	Apbb3	Fe65l2|Rirl2|TR2S	amyloid beta (A4) precursor protein-binding, family B, member 3	protein-coding	0.065000	0.597015	
mm_111559.1	chr12	101083493	101083693	-	1	NA	NA	NA	109	NM_211355	68734	Mm.87077	NM_211355	ENSMUSG00000041846	Smek1	1110034C04Rik|BC064465|Ppp4r3a|mKIAA2010	SMEK homolog 1, suppressor of mek1 (Dictyostelium)	protein-coding	0.145000	0.741294	55(CGCTTTAAGTGG,-,0.00)
mm_163729.1	chr13	119613768	119613968	-	1	NA	NA	NA	-9951	NM_020279	56838	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.005000	0.437811	
mm_76163.1	chr8	82378960	82379160	-	1	NA	NA	NA	23526	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.000000	0.363184	
mm_141455.1	chr17	30415746	30415946	-	1	NA	NA	NA	-19666	NR_030688	623169	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0.010000	0.482587	
mm_101278.1	chr11	21565798	21565998	-	1	NA	NA	NA	6036	NM_008618	17449	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	0.015000	0.527363	
mm_46706.1	chr5	110285948	110286148	-	1	NA	NA	NA	120	NM_008993	19301	Mm.21853	NM_008993	ENSMUSG00000029499	Pxmp2	22kDa|PMP22	peroxisomal membrane protein 2	protein-coding	0.110000	0.721393	
mm_10337.1	chr2	11642753	11642953	+	1	NA	NA	NA	61	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.000000	0.457711	-33(GCTTAAATAGAA,+,0.00),1(TTGTCTAAAAGC,-,0.00)
mm_119074.1	chr14	30879441	30879641	+	1	NA	NA	NA	284	NM_181390	66175	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0.025000	0.547264	-33(GACTATATAAGT,-,0.00)
mm_107862.1	chr12	69893149	69893349	+	1	NA	NA	NA	-86	NM_201519	399510	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	0.115000	0.711443	
mm_154835.1	chrX	19112363	19112563	+	1	NA	NA	NA	33925	NR_029806	723827		NR_029806	ENSMUSG00000065422	Mir221	Mirn221|mir-221|mmu-mir-221	microRNA 221	ncRNA	0.005000	0.447761	
mm_19323.1	chr2	90571882	90572082	-	1	NA	NA	NA	8665	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.000000	0.278607	
mm_172814.1	chr9	123689517	123689717	-	1	NA	NA	NA	-10785	NM_139142	102680	Mm.440867	NM_139142	ENSMUSG00000036814	Slc6a20a	A730081N20Rik|AU022428|Xt3s1|Xtrp3s1	solute carrier family 6 (neurotransmitter transporter), member 20A	protein-coding	0.030000	0.477612	
mm_53047.1	chr6	124713919	124714119	+	1	NA	NA	NA	1730	NM_007531	12034	Mm.36241	NM_007531	ENSMUSG00000004264	Phb2	AU044498|BAP|Bap37|Bcap37|REA	prohibitin 2	protein-coding	0.040000	0.587065	
mm_129819.1	chr15	83033135	83033335	-	1	NA	NA	NA	162	NM_001271412	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.040000	0.606965	
mm_101675.1	chr11	39360037	39360237	-	1	NA	NA	NA	30088	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA	0.000000	0.358209	52(CCTTTTATAGTC,+,0.00)
mm_103839.1	chr11	83040324	83040524	-	1	NA	NA	NA	109	NR_073524	237887	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	pseudo	0.005000	0.472637	
mm_104766.1	chr11	98508723	98508923	-	1	NA	NA	NA	37208	NM_011771	22780	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.005000	0.407960	
mm_155286.1	chrX	61183228	61183428	+	1	NA	NA	NA	2230	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.005000	0.427861	
mm_60182.1	chr7	43091499	43091699	+	1	NA	NA	NA	72801	NM_001105061	668612	Mm.469896	NM_001105061	ENSMUSG00000091528	Gm9268	EG668612|Vmn2r64	predicted gene 9268	protein-coding	0.000000	0.313433	
mm_54886.1	chr6	43666040	43666240	-	1	NA	NA	NA	138	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.170000	0.766169	
mm_135847.1	chr16	59171223	59171423	-	1	NA	NA	NA	-3182	NM_146779	258775	Mm.438896	NM_146779	ENSMUSG00000096695	Olfr196	MOR183-1	olfactory receptor 196	protein-coding	0.000000	0.447761	
mm_38613.1	chr4	141932819	141933019	-	1	NA	NA	NA	-50073	NR_040672	545691	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037|OTTMUSG00000010113	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.030000	0.611940	
mm_86623.1	chr10	13966142	13966342	+	1	NA	NA	NA	-137	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.115000	0.736318	
mm_20470.1	chr2	129371039	129371239	-	1	NA	NA	NA	0	NM_008361	16176	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	0.005000	0.447761	
mm_61715.1	chr7	81571182	81571382	+	1	NA	NA	NA	-10	NM_001004185	434204	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	0.055000	0.611940	
mm_77915.1	chr9	7350012	7350212	+	1	NA	NA	NA	2738	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.015000	0.358209	
mm_39368.1	chr5	9295305	9295505	+	1	NA	NA	NA	29212	NM_172706	231014	Mm.130063	NM_172706	ENSMUSG00000056004	9330182L06Rik	Eig121l	RIKEN cDNA 9330182L06 gene	protein-coding	0.005000	0.383085	
mm_139311.1	chr17	48351663	48351863	+	1	NA	NA	NA	5362	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.010000	0.572139	
mm_143188.1	chr17	58991249	58991449	-	1	NA	NA	NA	26	NM_027001	69239	Mm.246732	NM_027001	ENSMUSG00000024227	Pdzph1	2610034M16Rik|AV114557	PDZ and pleckstrin homology domains 1	protein-coding	0.020000	0.358209	
mm_23978.1	chr3	85998769	85998969	+	1	NA	NA	NA	3622	NM_001001650	368202	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding	0.000000	0.363184	
mm_151628.1	chr19	3912617	3912817	-	1	NA	NA	NA	57	NM_144870	225887	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0.060000	0.611940	
mm_148643.1	chr19	5489240	5489440	+	1	NA	NA	NA	-1004	NM_027877	71711	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	0.030000	0.616915	
mm_22085.1	chr2	168766964	168767164	-	1	NA	NA	NA	137	NM_201395	99377	Mm.434054	NM_175303	ENSMUSG00000027547	Sall4	5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20	sal-like 4 (Drosophila)	protein-coding	0.065000	0.592040	
mm_94836.1	chr11	23497745	23497945	+	1	NA	NA	NA	194	NM_001290655	268390	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	0.120000	0.721393	
mm_154653.1	chrX	7841733	7841933	+	1	NA	NA	NA	2	NM_138604	54644	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	0.070000	0.611940	
mm_133861.1	chr16	96313626	96313826	+	1	NA	NA	NA	32694	NM_033149	93961	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	0.025000	0.442786	-33(CTCTTTAAAAGG,-,0.00),-32(TCTTTAAAAGGA,+,0.00)
mm_62568.1	chr7	104244355	104244555	+	1	NA	NA	NA	-2	NM_030684	94094	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	0.010000	0.497512	
mm_14172.1	chr2	126707109	126707309	+	1	NA	NA	NA	-119	NM_001252580	84092	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	0.100000	0.626866	
mm_123193.1	chr14	57999121	57999321	-	1	NA	NA	NA	41	NM_028643	68514	Mm.26834	NM_028643	ENSMUSG00000021973	Micu2	1110008L20Rik|4833427E09Rik|AU041871|Efha1|Smhs2	mitochondrial calcium uptake 2	protein-coding	0.150000	0.736318	
mm_98969.1	chr11	98682703	98682903	+	1	NA	NA	NA	249	NM_009439	22123	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0.110000	0.726368	
mm_60955.1	chr7	47052927	47053127	+	1	NA	NA	NA	2387	NM_026436	67893	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.025000	0.537313	-79(CCTTATCAAGTG,+,0.00)
mm_169548.1	chr15	103242190	103242390	+	1	NA	NA	NA	1836	NR_002883	434858	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.020000	0.422886	81(TCTTTTAAGGTC,+,0.00)
mm_3120.1	chr1	134646544	134646744	+	1	NA	NA	NA	-37	NM_009307	20980	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194	synaptotagmin II	protein-coding	0.130000	0.746269	
mm_67648.1	chr7	84669799	84669999	-	1	NA	NA	NA	9452	NM_022985	65098	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	0.000000	0.412935	
mm_28464.1	chr3	90695185	90695385	-	1	NA	NA	NA	436	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.010000	0.462687	
mm_71165.1	chr8	40546218	40546418	+	1	NA	NA	NA	-30471	NM_001271542	18983	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0.005000	0.378109	
mm_150738.1	chr19	43753022	43753222	+	1	NA	NA	NA	99	NM_025530	66388	Mm.20257	NM_025530	ENSMUSG00000025193	Cutc	2310039I18Rik|AI326282|CGI-32	cutC copper transporter	protein-coding	0.140000	0.691542	
mm_148262.1	chr18	80933909	80934109	-	1	NA	NA	NA	49	NM_001201569	50771	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	0.100000	0.681592	
mm_71791.1	chr8	66860204	66860404	+	1	NA	NA	NA	87	NM_001163564	234344	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0.125000	0.701493	
mm_20434.1	chr2	129306473	129306673	-	1	NA	NA	NA	3399	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.025000	0.477612	
mm_77860.1	chr9	5312818	5313018	+	1	NA	NA	NA	4069	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.000000	0.273632	
mm_23452.1	chr3	60031719	60031919	+	1	NA	NA	NA	31	NM_023383	67758	Mm.24547	NM_023383	ENSMUSG00000027761	Aadac	5033417E09Rik|AI265437|Aada	arylacetamide deacetylase (esterase)	protein-coding	0.005000	0.393035	39(CTTTATATACCG,+,0.00)
mm_170587.1	chr19	5799736	5799936	-	1	NA	NA	NA	2836	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.020000	0.482587	
mm_147376.1	chr18	43687469	43687669	-	1	NA	NA	NA	204	NM_001163637	76217	Mm.134602	NM_001163637	ENSMUSG00000024502	Jakmip2	6430702L21Rik|AI850334|D930046L20Rik	janus kinase and microtubule interacting protein 2	protein-coding	0.055000	0.582090	
mm_88105.1	chr10	69096030	69096230	+	1	NA	NA	NA	-112422	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.025000	0.512438	
mm_45650.1	chr5	77018762	77018962	-	1	NA	NA	NA	1	NR_077218	68246	Mm.319633	NR_077218	ENSMUSG00000086632	1700112J05Rik	1700110A09Rik	RIKEN cDNA 1700112J05 gene	ncRNA	0.020000	0.447761	
mm_78665.1	chr9	40687748	40687948	+	1	NA	NA	NA	1884	NM_133733	71566	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.000000	0.462687	86(CTTTTTATACTG,+,0.00)
mm_20325.1	chr2	127458121	127458321	-	1	NA	NA	NA	-13656	NM_029629	68126	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	0.005000	0.447761	
mm_129457.1	chr15	78572572	78572772	-	1	NA	NA	NA	111	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.015000	0.611940	
mm_141800.1	chr17	34420081	34420281	-	1	NA	NA	NA	21361	NM_001163855	407788	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	0.020000	0.497512	
mm_95345.1	chr11	48800263	48800463	+	1	NA	NA	NA	3	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.065000	0.597015	
mm_42972.1	chr5	123142016	123142216	+	1	NA	NA	NA	-77	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.085000	0.746269	
mm_60247.1	chr7	43774515	43774715	+	1	NA	NA	NA	-2	NM_001177373	56538	Mm.154276	NM_019974	ENSMUSG00000067616	Klk11	2310015I08Rik|Prss20|TLSP	kallikrein related-peptidase 11	protein-coding	0.020000	0.572139	
mm_53154.1	chr6	125266146	125266346	+	1	NA	NA	NA	721	NR_015527	73870	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.030000	0.577114	
mm_162501.1	chr1	140245819	140246019	+	1	NA	NA	NA	-338	NM_001081027	240776	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0.055000	0.502488	
mm_82436.1	chr9	15278691	15278891	-	1	NA	NA	NA	1076	NM_144933	234959	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0.010000	0.323383	
mm_26936.1	chr3	20263619	20263819	-	1	NA	NA	NA	12014	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.020000	0.432836	
mm_154593.1	chrX	7580405	7580605	+	1	NA	NA	NA	22	NM_001199348	20371	Mm.182291	NM_054039	ENSMUSG00000039521	Foxp3	JM2|scurfin|sf	forkhead box P3	protein-coding	0.010000	0.487562	
mm_170080.1	chr17	34543629	34543829	+	1	NA	NA	NA	-20566	NM_010929	18132	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	0.025000	0.502488	
mm_72413.1	chr8	81855960	81856160	+	1	NA	NA	NA	513498	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.005000	0.368159	16(CTTTATATAGAG,+,0.00)
mm_25362.1	chr3	107100859	107101059	+	1	NA	NA	NA	-608	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.010000	0.572139	
mm_11571.1	chr2	32911294	32911494	+	1	NA	NA	NA	35260	NM_146119	227737	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.035000	0.562189	
mm_11243.1	chr2	29889719	29889919	+	1	NA	NA	NA	99	NM_001177659	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.120000	0.681592	
mm_107570.1	chr12	44328756	44328956	+	1	NA	NA	NA	-29	NM_176930	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.165000	0.781095	
mm_48968.1	chr6	4623864	4624064	+	1	NA	NA	NA	22898	NM_145398	213819	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1	CAS1 domain containing 1	protein-coding	0.030000	0.497512	
mm_171180.1	chr3	35932710	35932910	-	1	NA	NA	NA	156	NM_001205361	114893	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.170000	0.800995	
mm_94771.1	chr11	21239875	21240075	+	1	NA	NA	NA	943	NM_001290628	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.015000	0.353234	71(CCTTATAGAGAC,+,0.00)
mm_79178.1	chr9	48161927	48162127	+	1	NA	NA	NA	178871	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.020000	0.467662	
mm_110231.1	chr12	29290926	29291126	-	1	NA	NA	NA	-237358	NM_001093775	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.035000	0.611940	
mm_106129.1	chr11	116448300	116448500	-	1	NA	NA	NA	5947	NM_001033267	217341	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0.030000	0.577114	
mm_76076.1	chr8	78821040	78821240	-	1	NA	NA	NA	12	NM_001191004	78651	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.105000	0.621891	
mm_52638.1	chr6	117174605	117174805	+	1	NA	NA	NA	6170	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.005000	0.348259	
mm_38642.1	chr4	143212573	143212773	-	1	NA	NA	NA	36	NM_001081355	110593	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0.175000	0.791045	
mm_152266.1	chr19	8798430	8798630	-	1	NA	NA	NA	27	NM_026329	67710	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	0.065000	0.597015	
mm_59498.1	chr7	27537524	27537724	+	1	NA	NA	NA	14363	NM_001033315	233020	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.035000	0.547264	
mm_112687.1	chr13	16030865	16031065	+	1	NA	NA	NA	19114	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.388060	
mm_19298.1	chr2	90463019	90463219	-	1	NA	NA	NA	16055	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.035000	0.462687	
mm_88305.1	chr10	75324874	75325074	+	1	NA	NA	NA	116	NM_001331096	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.035000	0.606965	
mm_94776.1	chr11	21272063	21272263	+	1	NA	NA	NA	33131	NM_001290628	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.010000	0.427861	-1(GCCCTTTTAAGG,-,0.00),0(CCCTTTTAAGGC,-,0.00),1(CCTTTTAAGGCC,+,0.00)
mm_23123.1	chr3	37644721	37644921	+	1	NA	NA	NA	4874	NM_001305442	24063	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty homolog 1 (Drosophila)	protein-coding	0.020000	0.338308	
mm_84464.1	chr9	66592879	66593079	-	1	NA	NA	NA	136	NM_144937	235441	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.115000	0.686567	
mm_41824.1	chr5	104046790	104046990	+	1	NA	NA	NA	26	NM_028794	74167	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	0.145000	0.751244	
mm_16071.1	chr2	168081191	168081391	+	1	NA	NA	NA	287	NM_021409	58220	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0.170000	0.810945	
mm_84711.1	chr9	73039559	73039759	-	1	NA	NA	NA	40	NM_018889	55981	Mm.139905	NM_018889	ENSMUSG00000079469	Pigb	Pig-b	phosphatidylinositol glycan anchor biosynthesis, class B	protein-coding	0.090000	0.671642	
mm_10922.1	chr2	25428471	25428671	+	1	NA	NA	NA	-103	NM_007379	11305	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	0.125000	0.741294	-6(GCCTTTAAGTGG,-,0.00)
mm_109264.1	chr12	109544723	109544923	+	1	NA	NA	NA	282	NR_037313	100499530		NR_037313	ENSMUSG00000084559	Mir1906-2	mmu-mir-1906-2	microRNA 1906-2	ncRNA	0.020000	0.467662	
mm_101694.1	chr11	40750600	40750800	-	1	NA	NA	NA	4586	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.015000	0.333333	
mm_92272.1	chr10	71159719	71159919	-	1	NA	NA	NA	-129	NM_001347189	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	BicC family RNA binding protein 1	protein-coding	0.185000	0.865672	
mm_65939.1	chr7	30394336	30394536	-	1	NA	NA	NA	-19352	NM_011662	22177	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0.020000	0.487562	
mm_103397.1	chr11	75437326	75437526	-	1	NA	NA	NA	2075	NM_008878	18816	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	0.005000	0.557214	
mm_83134.1	chr9	40435138	40435338	-	1	NA	NA	NA	20526	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.005000	0.432836	
mm_84492.1	chr9	66847534	66847734	-	1	NA	NA	NA	-12928	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.025000	0.552239	
mm_41852.1	chr5	104439345	104439545	+	1	NA	NA	NA	3253	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.045000	0.497512	
mm_79770.1	chr9	62838491	62838691	+	1	NA	NA	NA	-196	NM_001033175	76524	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.015000	0.582090	
mm_116552.1	chr13	46726956	46727156	-	1	NA	NA	NA	793	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.040000	0.507463	
mm_14240.1	chr2	127702317	127702517	+	1	NA	NA	NA	27480	NM_145532	228576	Mm.133036	NM_145532	ENSMUSG00000027377	Mall	BC012256|BENE	mal, T cell differentiation protein-like	protein-coding	0.000000	0.467662	
mm_43801.1	chr5	142821779	142821979	+	1	NA	NA	NA	-4492	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.035000	0.606965	
mm_26507.1	chr3	145810356	145810556	+	1	NA	NA	NA	51764	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.020000	0.492537	
mm_21009.1	chr2	152376970	152377170	-	1	NA	NA	NA	-504	NM_001009948	228777	Mm.330667	NM_001009948	ENSMUSG00000059361	Nrsn2	Gm123|Neurensin-2	neurensin 2	protein-coding	0.030000	0.502488	-80(AGGTATATAAGA,-,0.00)
mm_64165.1	chr7	141395496	141395696	+	1	NA	NA	NA	3436	NM_011528	21351	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0.000000	0.497512	
mm_13533.1	chr2	110600443	110600643	+	1	NA	NA	NA	3244	NM_001177624	241612	Mm.277148	NM_001003915	ENSMUSG00000041644	Slc5a12	AI315119|D630015G19|SMCT2	solute carrier family 5 (sodium/glucose cotransporter), member 12	protein-coding	0.010000	0.373134	
mm_108934.1	chr12	101221972	101222172	+	1	NA	NA	NA	76463	NR_033653	74947	Mm.488905	NR_033653	ENSMUSG00000092054	Kif4-ps	4930463M05Rik|Kif4b	kinesin family member 4, pseudogene	pseudo	0.040000	0.527363	
mm_22268.1	chr2	178416506	178416706	-	1	NA	NA	NA	2072	NM_001081289	71532	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	0.045000	0.532338	
mm_49293.1	chr6	17693877	17694077	+	1	NA	NA	NA	-17	NM_001289624	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.115000	0.671642	
mm_127133.1	chr15	98167801	98168001	+	1	NA	NA	NA	95	NM_177716	239650	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	0.110000	0.716418	
mm_153387.1	chr19	40377703	40377903	-	1	NA	NA	NA	24507	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.030000	0.587065	
mm_143037.1	chr17	56716723	56716923	-	1	NA	NA	NA	98	NM_178926	106639	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0.110000	0.761194	
mm_53720.1	chr6	143947081	143947281	+	1	NA	NA	NA	-75	NM_001347506	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.000000	0.398010	
mm_140196.1	chr17	83666717	83666917	+	1	NA	NA	NA	-34922	NM_153512	225030	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.040000	0.606965	
mm_83929.1	chr9	56635607	56635807	-	1	NA	NA	NA	-59	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.100000	0.731343	
mm_4263.1	chr1	171458012	171458212	+	1	NA	NA	NA	20551	NM_172647	16456	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	0.025000	0.482587	
mm_45840.1	chr5	87696077	87696277	-	1	NA	NA	NA	3248	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.000000	0.243781	
mm_1676.1	chr1	74816920	74817120	+	1	NA	NA	NA	25001	NM_009518	22409	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0.090000	0.656716	43(TGCCTTTTAAGC,-,0.00),45(CCTTTTAAGCTG,+,0.00)
mm_79544.1	chr9	57910995	57911195	+	1	NA	NA	NA	109	NM_001122873	69459	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0.080000	0.651741	
mm_50471.1	chr6	48987765	48987965	+	1	NA	NA	NA	1004	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.015000	0.507463	
mm_133514.1	chr16	90738448	90738648	+	1	NA	NA	NA	224	NM_029844	77037	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.045000	0.547264	
mm_140021.1	chr17	73830287	73830487	+	1	NA	NA	NA	25546	NM_020578	57440	Mm.18526	NM_020578	ENSMUSG00000024065	Ehd3	Ehd2	EH-domain containing 3	protein-coding	0.010000	0.512438	
mm_110450.1	chr12	51620552	51620752	-	1	NA	NA	NA	27311	NM_001198835	12810	Mm.21325	NM_007728	ENSMUSG00000020953	Coch	AW122937|Coch-5B2|D12H14S564E	cochlin	protein-coding	0.000000	0.353234	
mm_66866.1	chr7	57240192	57240392	-	1	NA	NA	NA	146579	NM_008074	14407	Mm.434343	NM_008074	ENSMUSG00000055026	Gabrg3	B230362M20Rik|Gabrg-3	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3	protein-coding	0.000000	0.373134	
mm_110073.1	chr12	21417457	21417657	-	1	NA	NA	NA	-121	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.095000	0.646766	
mm_116424.1	chr13	41828372	41828572	-	1	NA	NA	NA	19016	NM_175417	109254	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.010000	0.487562	
mm_45031.1	chr5	39338770	39338970	-	1	NA	NA	NA	264704	NR_045416	75095	Mm.332354	NR_045416	ENSMUSG00000106741	4930513D17Rik	-	RIKEN cDNA 4930513D17 gene	ncRNA	0.000000	0.412935	57(TGGCCTAAAAGG,-,0.00)
mm_148513.1	chr19	4231869	4232069	+	1	NA	NA	NA	76	NM_027196	69745	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0.020000	0.572139	
mm_7496.1	chr1	121346125	121346325	-	1	NA	NA	NA	-13636	NM_178082	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.005000	0.502488	
mm_55824.1	chr6	83078125	83078325	-	1	NA	NA	NA	-165	NM_197992	69837	Mm.12261	NM_197992	ENSMUSG00000069678	Pcgf1	2010002K04Rik|AU024121|Nspc1	polycomb group ring finger 1	protein-coding	0.080000	0.646766	
mm_10897.1	chr2	25272368	25272568	+	1	NA	NA	NA	2	NM_175300	99152	Mm.291624	NM_175300	ENSMUSG00000026965	Anapc2	9230107K09Rik|AL024279|Apc2|Emi4|Imi4|mKIAA1406	anaphase promoting complex subunit 2	protein-coding	0.135000	0.711443	
mm_85174.1	chr9	96525151	96525351	-	1	NA	NA	NA	-46576	NM_001311135	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.025000	0.587065	
mm_159325.1	chr3	27371221	27371421	+	1	NA	NA	NA	-30	NM_177330	208188	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0.055000	0.616915	
mm_2893.1	chr1	131910465	131910665	+	1	NA	NA	NA	107	NM_001145804	98415	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.090000	0.666667	
mm_134179.1	chr16	10960486	10960686	-	1	NA	NA	NA	32535	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.015000	0.452736	31(CCTTAAAGACTG,+,0.00)
mm_33822.1	chr4	135439335	135439535	+	1	NA	NA	NA	-5630	NM_022980	53902	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	0.035000	0.636816	-88(GCCTATAGGGCC,+,0.00)
mm_73419.1	chr8	106059688	106059888	+	1	NA	NA	NA	185	NM_010901	18021	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.155000	0.771144	
mm_131605.1	chr16	19218488	19218688	+	1	NA	NA	NA	68153	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.005000	0.378109	
mm_58781.1	chr7	16062641	16062841	+	1	NA	NA	NA	-9104	NM_001347559	666528	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.005000	0.417910	-6(TTTTTTAAAGAC,+,0.00)
mm_33247.1	chr4	127077318	127077518	+	1	NA	NA	NA	35	NM_001285887	100177	Mm.276096	NM_177462	ENSMUSG00000042408	Zmym6	9330177P20Rik|AI593204|AI661340|D4Wsu24e|Zfp258	zinc finger, MYM-type 6	protein-coding	0.100000	0.686567	
mm_41235.1	chr5	88764837	88765037	+	1	NA	NA	NA	-76	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.110000	0.741294	
mm_56993.1	chr6	120916740	120916940	-	1	NA	NA	NA	-20	NM_007544	12122	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	0.115000	0.696517	
mm_30418.1	chr3	152265792	152265992	-	1	NA	NA	NA	428	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.090000	0.716418	
mm_56613.1	chr6	112490738	112490938	-	1	NA	NA	NA	-1030	NM_001081147	18430	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding	0.045000	0.601990	
mm_132998.1	chr16	55820300	55820500	+	1	NA	NA	NA	1738	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.025000	0.412935	
mm_147476.1	chr18	47070790	47070990	-	1	NA	NA	NA	112014	NM_178377	69456	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2	COMM domain containing 10	protein-coding	0.010000	0.432836	
mm_8106.1	chr1	135850720	135850920	-	1	NA	NA	NA	9959	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.015000	0.552239	
mm_75918.1	chr8	71485836	71486036	-	1	NA	NA	NA	131	NM_001164679	382014	Mm.260360	NM_001164679	ENSMUSG00000034863	Ano8	BC053460|Tmem16h	anoctamin 8	protein-coding	0.125000	0.756219	
mm_45876.1	chr5	88328007	88328207	-	1	NA	NA	NA	10795	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.010000	0.447761	
mm_33095.1	chr4	124696751	124696951	+	1	NA	NA	NA	-3297	NM_026031	67205	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11l	2700082D03Rik|CGI-94|Cgi94|Utp11	UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	protein-coding	0.025000	0.532338	
mm_114728.1	chr13	83721200	83721400	+	1	NA	NA	NA	-6806	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.040000	0.597015	
mm_73893.1	chr8	119418916	119419116	+	1	NA	NA	NA	-18146	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.010000	0.626866	
mm_37149.1	chr4	117120202	117120402	-	1	NA	NA	NA	5423	NR_024078	78611	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0.020000	0.502488	
mm_45953.1	chr5	90450056	90450256	-	1	NA	NA	NA	-10714	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.462687	
mm_144620.1	chr18	32866071	32866271	+	1	NA	NA	NA	14502	NR_105779	102465186		NR_105779	ENSMUSG00000098252	Mir6361	Gm27612|mmu-mir-6361	microRNA 6361	ncRNA	0.010000	0.368159	
mm_169237.1	chr13	72391712	72391912	-	1	NA	NA	NA	236752	NR_030701	328287	Mm.235072	NR_030701		Gm20554	D430050G20	predicted gene, 20554	ncRNA	0.050000	0.636816	
mm_62727.1	chr7	110777464	110777664	+	1	NA	NA	NA	4960	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.035000	0.517413	
mm_123974.1	chr14	75174706	75174906	-	1	NA	NA	NA	38381	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.005000	0.447761	
mm_105204.1	chr11	102097795	102097995	-	1	NA	NA	NA	3405	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.025000	0.517413	
mm_120146.1	chr14	60485063	60485263	+	1	NA	NA	NA	106877	NM_001164705	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.010000	0.522388	
mm_128784.1	chr15	66803751	66803951	-	1	NA	NA	NA	27978	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.010000	0.482587	
mm_86457.1	chr10	4347717	4347917	+	1	NA	NA	NA	40291	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.050000	0.522388	
mm_54025.1	chr6	8778423	8778623	-	1	NA	NA	NA	-39	NM_010492	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.050000	0.572139	
mm_165350.1	chr2	120186664	120186864	+	1	NA	NA	NA	-32189	NM_133838	98878	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.005000	0.432836	-12(TGCTTTTTAAGG,-,0.00),-10(CTTTTTAAGGAG,+,0.00),82(GCTTATAGAGAT,+,0.00)
mm_94402.1	chr11	5762052	5762252	+	1	NA	NA	NA	2	NR_015577	76508	Mm.260203	NR_015577	ENSMUSG00000083844	Ube2d-ps	1600028I17Rik|2210015D19Rik|AI596465	ubiquitin-conjugating enzyme E2D, pseudogene	ncRNA	0.135000	0.696517	
mm_41358.1	chr5	90506456	90506656	+	1	NA	NA	NA	-12393	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.020000	0.447761	
mm_43894.1	chr5	144174859	144175059	+	1	NA	NA	NA	-15327	NM_010800	17341	Mm.386767	NM_010800	ENSMUSG00000052271	Bhlha15	1810009C13Rik|Bhlhb8|MIST-1|Mist1	basic helix-loop-helix family, member a15	protein-coding	0.025000	0.552239	
mm_36327.1	chr4	70410343	70410543	-	1	NA	NA	NA	-8	NM_145990	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.095000	0.636816	
mm_61916.1	chr7	90148933	90149133	+	1	NA	NA	NA	18801	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.005000	0.323383	
mm_6900.1	chr1	84765943	84766143	-	1	NA	NA	NA	-69822	NM_152915	227325	Mm.292560	NM_152915	ENSMUSG00000036766	Dner	A930026D19Rik|BET|Bret	delta/notch-like EGF repeat containing	protein-coding	0.010000	0.363184	-99(TTTTTTAAAGGG,+,0.00)
mm_117451.1	chr13	74808451	74808651	-	1	NA	NA	NA	209	NM_001301153	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.095000	0.686567	
mm_3286.1	chr1	136662053	136662253	+	1	NA	NA	NA	-21243	NR_045324	100503460	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.000000	0.472637	-63(GCCTCTTAAGGG,-,0.00),-62(CCTCTTAAGGGA,+,0.00)
mm_96549.1	chr11	68871938	68872138	+	1	NA	NA	NA	-16515	NM_177060	320040	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	0.020000	0.562189	
mm_158518.1	chrX	143482992	143483192	-	1	NA	NA	NA	-35499	NM_001195048	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding	0.015000	0.348259	
mm_4641.1	chr1	179960677	179960877	+	1	NA	NA	NA	17	NM_001346805	226751	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	0.015000	0.243781	-6(TTTTTTAAGGAG,+,0.00)
mm_28448.1	chr3	90514192	90514392	-	1	NA	NA	NA	38	NM_011309	20193	Mm.24662	NM_011309	ENSMUSG00000044080	S100a1	AI266795|S100|S100a	S100 calcium binding protein A1	protein-coding	0.060000	0.597015	
mm_123684.1	chr14	69555210	69555410	-	1	NA	NA	NA	77	NR_045091	100504477	Mm.396396	NR_045091		Gm16677	-	predicted gene, 16677	ncRNA	0.105000	0.681592	
mm_13493.1	chr2	106693490	106693690	+	1	NA	NA	NA	131	NM_001143683	77015	Mm.45628	NM_029837	ENSMUSG00000016386	Mpped2	239Fb|2700082O15Rik|AV354767|AW060960	metallophosphoesterase domain containing 2	protein-coding	0.125000	0.741294	
mm_146713.1	chr18	14729235	14729435	-	1	NA	NA	NA	23184	NM_001163609	73677	Mm.87277	NM_001163609	ENSMUSG00000036743	Psma8	2410072D24Rik	proteasome (prosome, macropain) subunit, alpha type, 8	protein-coding	0.000000	0.412935	
mm_118556.1	chr14	17945116	17945316	+	1	NA	NA	NA	-36428	NM_009380	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.000000	0.223881	
mm_49447.1	chr6	29348039	29348239	+	1	NA	NA	NA	33	NM_184053	12321	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	0.075000	0.641791	
mm_26828.1	chr3	10439869	10440069	-	1	NA	NA	NA	161	NM_029068	74718	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0.140000	0.766169	
mm_146045.1	chr18	69593306	69593506	+	1	NA	NA	NA	247685	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.050000	0.517413	
mm_132752.1	chr16	44160255	44160455	+	1	NA	NA	NA	-13042	NM_001029889	207806	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.000000	0.353234	
mm_158881.1	chr1	5917311	5917511	-	1	NA	NA	NA	-13	NM_010342	226304	Mm.291110	NM_010342	ENSMUSG00000033774	Npbwr1	Gpr7|Nbpwr1	neuropeptides B/W receptor 1	protein-coding	0.065000	0.597015	
mm_168631.1	chr1	182201492	182201692	+	1	NA	NA	NA	-43494	NM_001166728	625823	Mm.479992	NM_001166728	ENSMUSG00000091013	Vmn1r1	EG625823|Gm6628	vomeronasal 1 receptor 1	protein-coding	0.045000	0.467662	-35(CTGCATAAAAAG,-,0.00)
mm_18439.1	chr2	60881244	60881444	-	1	NA	NA	NA	94	NM_001141932	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.185000	0.800995	35(ACTTTTAGGGCG,+,0.00)
mm_163618.1	chr13	55321988	55322188	+	1	NA	NA	NA	33	NM_025596	66494	Mm.439805	NM_025596	ENSMUSG00000021486	Prelid1	2610524G07Rik|Preli	PRELI domain containing 1	protein-coding	0.110000	0.706468	
mm_172799.1	chr9	114671386	114671586	-	1	NA	NA	NA	-17345	NM_146229	235661	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	0.040000	0.532338	-22(GACTATATAAAA,-,0.00)
mm_41435.1	chr5	90904049	90904249	+	1	NA	NA	NA	250	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.020000	0.587065	
mm_171958.1	chr5	81205032	81205232	+	1	NA	NA	NA	183539	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.030000	0.557214	-19(GTGCATTAAAGA,-,0.00)
mm_162210.1	chrX	136068032	136068232	-	1	NA	NA	NA	104	NM_009749	12069	Mm.94160	NM_009749	ENSMUSG00000042750	Bex2	AL024066|Bex1	brain expressed X-linked 2	protein-coding	0.115000	0.741294	
mm_135932.1	chr16	73958296	73958496	-	1	NA	NA	NA	383671	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.005000	0.447761	
mm_40434.1	chr5	53590265	53590465	+	1	NA	NA	NA	19	NM_001277116	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.100000	0.686567	
mm_65067.1	chr7	18910301	18910501	-	1	NA	NA	NA	3	NM_001033314	232933	Mm.333624	NM_001033314	ENSMUSG00000074358	Ccdc61	C530028I08Rik|Gm159	coiled-coil domain containing 61	protein-coding	0.095000	0.621891	
mm_49729.1	chr6	34709385	34709585	+	1	NA	NA	NA	41	NM_145575	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.025000	0.532338	
mm_100865.1	chr11	5897927	5898127	-	1	NA	NA	NA	755	NM_022879	17898	Mm.46514	NM_022879	ENSMUSG00000020469	Myl7	MLC-2alpha|MLC2a|MYL2A|Mylc2a|RLC-A	myosin, light polypeptide 7, regulatory	protein-coding	0.025000	0.636816	
mm_39244.1	chr5	3343826	3344026	+	1	NA	NA	NA	33	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.090000	0.656716	
mm_43254.1	chr5	130219613	130219813	+	1	NA	NA	NA	-31	NM_001081394	71667	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0.010000	0.522388	
mm_101017.1	chr11	8573349	8573549	-	1	NA	NA	NA	91086	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.035000	0.537313	
mm_83283.1	chr9	43105969	43106169	-	1	NA	NA	NA	-351	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0.160000	0.781095	
mm_85895.1	chr9	111055559	111055759	-	1	NA	NA	NA	1585	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.030000	0.542289	
mm_145672.1	chr18	61555174	61555374	+	1	NA	NA	NA	-308	NM_146087	93687	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0.100000	0.676617	
mm_19499.1	chr2	93461850	93462050	-	1	NA	NA	NA	-99	NM_001271461	12521	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.045000	0.492537	
mm_5684.1	chr1	43163988	43164188	-	1	NA	NA	NA	-127	NM_010212	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.095000	0.656716	
mm_40195.1	chr5	36867553	36867753	+	1	NA	NA	NA	-917	NM_172994	269643	Mm.41694	NM_172994	ENSMUSG00000029120	Ppp2r2c	6330548O06Rik|IMYPNO|IMYPNO1|PR52	protein phosphatase 2, regulatory subunit B, gamma	protein-coding	0.015000	0.562189	
mm_139078.1	chr17	46680351	46680551	+	1	NA	NA	NA	-2	NM_001277310	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.050000	0.606965	
mm_172092.1	chr6	21986685	21986885	+	1	NA	NA	NA	875	NM_001081351	214642	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.055000	0.527363	
mm_170400.1	chr1	86359299	86359499	-	1	NA	NA	NA	56	NM_010880	17975	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	0.100000	0.636816	
mm_53502.1	chr6	135362734	135362934	+	1	NA	NA	NA	-97	NM_010128	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.015000	0.442786	85(CTCCTTTAAAAC,-,0.00),87(CCTTTAAAACAC,+,0.00)
mm_104578.1	chr11	96955870	96956070	-	1	NA	NA	NA	11824	NR_003293	319371	Mm.436865	NR_003293	ENSMUSG00000078700	D030028A08Rik	-	RIKEN cDNA D030028A08 gene	ncRNA	0.045000	0.616915	
mm_128084.1	chr15	27697640	27697840	-	1	NA	NA	NA	-16198	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.015000	0.457711	
mm_4219.1	chr1	171329375	171329575	+	1	NA	NA	NA	330	NM_011615	21945	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	0.165000	0.825871	
mm_53164.1	chr6	125321764	125321964	+	1	NA	NA	NA	524	NM_011324	20276	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0.035000	0.597015	
mm_36234.1	chr4	63152598	63152798	-	1	NA	NA	NA	1474	NM_007443	11699	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.030000	0.547264	
mm_15124.1	chr2	153779174	153779374	+	1	NA	NA	NA	-1605	NR_036629	100504221	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	0.045000	0.542289	
mm_163031.1	chr11	51755561	51755761	-	1	NA	NA	NA	1173	NM_001290785	77371	Mm.33878	NM_175255	ENSMUSG00000036391	Sec24a	-	Sec24 related gene family, member A (S. cerevisiae)	protein-coding	0.030000	0.507463	
mm_19827.1	chr2	111139562	111139762	-	1	NA	NA	NA	89938	NM_026248	67575	Mm.84331	NM_026248	ENSMUSG00000027157	4930430A15Rik	-	RIKEN cDNA 4930430A15 gene	protein-coding	0.000000	0.238806	
mm_146047.1	chr18	69593398	69593598	+	1	NA	NA	NA	247777	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.050000	0.472637	
mm_156197.1	chrX	134295293	134295493	+	1	NA	NA	NA	168	NM_026239	67564	Mm.41489	NM_026239	ENSMUSG00000033578	Tmem35a	9030603L14Rik|AI841526|PMP52|Tmem35	transmembrane protein 35A	protein-coding	0.045000	0.552239	
mm_135308.1	chr16	38712831	38713031	-	1	NA	NA	NA	104	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.125000	0.731343	
mm_70848.1	chr8	23446822	23447022	+	1	NA	NA	NA	35420	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding	0.025000	0.462687	
mm_50948.1	chr6	58640504	58640704	+	1	NA	NA	NA	43932	NM_011920	26357	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP-binding cassette, sub-family G (WHITE), member 2	protein-coding	0.140000	0.751244	
mm_70019.1	chr7	142575466	142575666	-	1	NA	NA	NA	1581	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.020000	0.532338	
mm_121734.1	chr14	18271098	18271298	-	1	NA	NA	NA	62	NM_023526	69721	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	0.085000	0.671642	
mm_73297.1	chr8	105048500	105048700	+	1	NA	NA	NA	1	NM_198672	382053	Mm.295534	NM_198672	ENSMUSG00000069922	Ces3a	Ces3|Ces31|Es31	carboxylesterase 3A	protein-coding	0.010000	0.467662	
mm_75708.1	chr8	68901174	68901374	-	1	NA	NA	NA	20719	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.035000	0.507463	
mm_7889.1	chr1	133256234	133256434	-	1	NA	NA	NA	10237	NM_182930	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding	0.020000	0.492537	
mm_18021.1	chr2	38613601	38613801	-	1	NA	NA	NA	30205	NM_011187	19177	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0.010000	0.442786	
mm_1369.1	chr1	66440078	66440278	+	1	NA	NA	NA	-28269	NM_175510	329178	Mm.44798	NM_175510	ENSMUSG00000055567	Unc80	C030018G13Rik|C230061B10Rik|UNC-80	unc-80, NALCN activator	protein-coding	0.005000	0.338308	
mm_115811.1	chr13	19619685	19619885	-	1	NA	NA	NA	45	NM_134065	105298	Mm.275054	NM_134065	ENSMUSG00000002808	Epdr1	AU040950|AV006210|Epdm2|Epdr2|MERP-1|MERP-2|MERP2|Ucc1	ependymin related protein 1 (zebrafish)	protein-coding	0.060000	0.587065	
mm_63750.1	chr7	131042879	131043079	+	1	NA	NA	NA	10903	NM_007769	12945	Mm.4138	NM_007769	ENSMUSG00000047517	Dmbt1	CRP|CRP-[a]|CRP-[b]|Crpd|DBMT1|gp300|p80	deleted in malignant brain tumors 1	protein-coding	0.005000	0.472637	31(TACTTTTAAAGA,-,0.00),32(ACTTTTAAAGAC,+,0.00)
mm_52801.1	chr6	121336767	121336967	+	1	NA	NA	NA	-6209	NM_001347433	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.020000	0.542289	
mm_44761.1	chr5	31573341	31573541	-	1	NA	NA	NA	-2044	NR_102275	100740	Mm.23370	NR_102275		AI839979	-	expressed sequence AI839979	ncRNA	0.005000	0.487562	
mm_97200.1	chr11	75596035	75596235	+	1	NA	NA	NA	4096	NR_110477	654359	Mm.439961	NR_110477		Gm12338	OTTMUSG00000006216	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.020000	0.522388	
mm_57580.1	chr6	127150570	127150770	-	1	NA	NA	NA	378	NM_009829	12444	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.075000	0.621891	
mm_125885.1	chr15	75842009	75842209	+	1	NA	NA	NA	-201	NM_172121	223642	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0.065000	0.562189	
mm_151968.1	chr19	5803413	5803613	-	1	NA	NA	NA	-841	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.090000	0.636816	
mm_115582.1	chr13	11676295	11676495	-	1	NA	NA	NA	154343	NR_027813	664793	Mm.410565	NR_027813		Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo	0.015000	0.328358	
mm_36463.1	chr4	82505736	82505936	-	1	NA	NA	NA	-57	NM_008687	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.065000	0.577114	
mm_89302.1	chr10	87914282	87914482	+	1	NA	NA	NA	-52289	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.378109	
mm_170617.1	chr19	61223787	61223987	+	1	NA	NA	NA	4531	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.010000	0.467662	
mm_57487.1	chr6	125266026	125266226	-	1	NA	NA	NA	601	NR_015527	73870	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.010000	0.502488	
mm_138423.1	chr17	35069522	35069722	+	1	NA	NA	NA	2297	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.005000	0.497512	78(GCCTTTCTAGCC,+,0.00)
mm_132767.1	chr16	44765642	44765842	+	1	NA	NA	NA	6	NM_021325	57781	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.015000	0.482587	
mm_9480.1	chr1	173367771	173367971	-	1	NA	NA	NA	-176	NM_053199	94332	Mm.330524	NM_053199	ENSMUSG00000005338	Cadm3	BIgR|Igsf4b|Necl-1|Necl1|SynCAM3|Tsll1	cell adhesion molecule 3	protein-coding	0.040000	0.656716	
mm_74804.1	chr8	22593656	22593856	-	1	NA	NA	NA	57	NM_001198998	22335	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	0.170000	0.761194	
mm_97060.1	chr11	72699058	72699258	+	1	NA	NA	NA	9156	NM_009671	11736	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	0.000000	0.358209	
mm_34613.1	chr4	150371792	150371992	+	1	NA	NA	NA	89976	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.100000	0.716418	
mm_144779.1	chr18	35830001	35830201	+	1	NA	NA	NA	283	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.120000	0.771144	
mm_172366.1	chr7	122441908	122442108	+	1	NA	NA	NA	152883	NM_008855	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.020000	0.497512	
mm_27703.1	chr3	67463522	67463722	-	1	NA	NA	NA	285	NM_016753	17035	Mm.2632	NM_016753	ENSMUSG00000047557	Lxn	-	latexin	protein-coding	0.050000	0.656716	
mm_16508.1	chr2	181319711	181319911	+	1	NA	NA	NA	87	NM_001001882	269400	Mm.11333	NM_001001882	ENSMUSG00000038685	Rtel1	AI451565|AW540478|Rtel	regulator of telomere elongation helicase 1	protein-coding	0.065000	0.527363	
mm_122068.1	chr14	30491397	30491597	-	1	NA	NA	NA	-341	NM_028981	12289	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.030000	0.577114	
mm_108367.1	chr12	80816581	80816781	+	1	NA	NA	NA	26149	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.000000	0.477612	60(CTCTTTATGAGC,-,0.00)
mm_92715.1	chr10	80797880	80798080	-	1	NA	NA	NA	646	NM_023900	78670	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.100000	0.701493	
mm_155200.1	chrX	56731291	56731491	+	1	NA	NA	NA	-370	NM_010211	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.125000	0.766169	
mm_86220.1	chr9	120091898	120092098	-	1	NA	NA	NA	-135	NM_007720	12776	Mm.442098	NM_007720	ENSMUSG00000042262	Ccr8	C-C|C-C CKR-8|CC-CKR-8|CCR-8|CKR-8|Cmkbr8|mCCR8	chemokine (C-C motif) receptor 8	protein-coding	0.005000	0.532338	
mm_77627.1	chr8	123983036	123983236	-	1	NA	NA	NA	-14	NM_019552	56199	Mm.274243	NM_019552	ENSMUSG00000031974	Abcb10	Abc-me|Abcb12	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding	0.115000	0.656716	
mm_123583.1	chr14	67062462	67062662	-	1	NA	NA	NA	9909	NM_028032	71978	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0.005000	0.383085	
mm_86025.1	chr9	112235843	112236043	-	1	NA	NA	NA	-1102	NM_001177619	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.020000	0.547264	
mm_74380.1	chr8	128685753	128685953	+	1	NA	NA	NA	199	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.180000	0.781095	
mm_132813.1	chr16	45169781	45169981	+	1	NA	NA	NA	11052	NM_026402	67841	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	0.005000	0.293532	-26(TGTTTTTAAAGG,-,0.00),-25(GTTTTTAAAGGG,+,0.00),-25(GTTTTTAAAGGG,-,0.00)
mm_21271.1	chr2	156862841	156863041	-	1	NA	NA	NA	4	NR_015591	74487	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA	0.130000	0.686567	
mm_56210.1	chr6	89316658	89316858	-	1	NA	NA	NA	-31033	NR_131021	75131	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	-	RIKEN cDNA 4930512J16 gene	ncRNA	0.005000	0.606965	
mm_145820.1	chr18	65431050	65431250	+	1	NA	NA	NA	153	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.110000	0.731343	
mm_71875.1	chr8	69716485	69716685	+	1	NA	NA	NA	-99	NM_181274	66869	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	0.090000	0.661692	
mm_41781.1	chr5	103716730	103716930	+	1	NA	NA	NA	-37332	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.010000	0.383085	
mm_1467.1	chr1	69826790	69826990	+	1	NA	NA	NA	-80	NM_029160	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	0.090000	0.656716	
mm_45599.1	chr5	75004249	75004449	-	1	NA	NA	NA	40292	NM_028850	74277	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	0.005000	0.258706	35(CTGTATATAAAC,-,0.00)
mm_47826.1	chr5	134265978	134266178	-	1	NA	NA	NA	-36453	NR_104383	17969	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.005000	0.427861	54(AAGTTTAAAAGC,-,0.00)
mm_8597.1	chr1	156033696	156033896	-	1	NA	NA	NA	1021	NM_001160019	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.005000	0.422886	
mm_99089.1	chr11	99620874	99621074	+	1	NA	NA	NA	-570	NM_001177537	100502803	Mm.351892	NM_001177537	ENSMUSG00000062278	Gm11562	OTTMUSG00000002199	predicted gene 11562	protein-coding	0.010000	0.497512	-31(GCATTTATAGCC,+,0.00)
mm_6910.1	chr1	84839216	84839416	-	1	NA	NA	NA	-12	NM_133975	14897	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.130000	0.711443	
mm_86625.1	chr10	13966893	13967093	+	1	NA	NA	NA	614	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.105000	0.676617	
mm_55603.1	chr6	71823710	71823910	-	1	NA	NA	NA	-26	NM_025430	66223	Mm.28579	NM_025430	ENSMUSG00000052962	Mrpl35	1110066C01Rik	mitochondrial ribosomal protein L35	protein-coding	0.050000	0.542289	
mm_122947.1	chr14	54965862	54966062	-	1	NA	NA	NA	645	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.000000	0.542289	
mm_141686.1	chr17	33951366	33951566	-	1	NA	NA	NA	22	NM_019420	54218	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	0.075000	0.636816	
mm_157542.1	chrX	51205763	51205963	-	1	NA	NA	NA	127	NM_001310515	171170	Mm.295324	NM_134163	ENSMUSG00000036109	Mbnl3	A530038J18Rik|AI661274|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL	muscleblind-like 3 (Drosophila)	protein-coding	0.145000	0.706468	
mm_101140.1	chr11	14178961	14179161	-	1	NA	NA	NA	-20	NR_131011	75280	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	0.005000	0.437811	
mm_21594.1	chr2	164237623	164237823	-	1	NA	NA	NA	618	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.030000	0.477612	
mm_148.1	chr1	11089671	11089871	+	1	NA	NA	NA	96306	NM_029525	109294	Mm.123247	NM_029525	ENSMUSG00000048960	Prex2	6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	protein-coding	0.020000	0.487562	
mm_39679.1	chr5	25753488	25753688	+	1	NA	NA	NA	-6385	NM_001310504	242894	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	0.030000	0.487562	
mm_63309.1	chr7	126862339	126862539	+	1	NA	NA	NA	467	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	0.085000	0.557214	
mm_115754.1	chr13	19192606	19192806	-	1	NA	NA	NA	203107	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.492537	
mm_54907.1	chr6	47636777	47636977	-	1	NA	NA	NA	18217	NR_002841	19799		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.015000	0.447761	
mm_114680.1	chr13	80886200	80886400	+	1	NA	NA	NA	2878	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.080000	0.616915	
mm_86925.1	chr10	23902051	23902251	+	1	NA	NA	NA	7463	NM_011704	22361	Mm.27154	NM_011704	ENSMUSG00000037440	Vnn1	V-1	vanin 1	protein-coding	0.060000	0.527363	
mm_40936.1	chr5	76657630	76657830	+	1	NA	NA	NA	66016	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.145000	0.771144	
mm_76671.1	chr8	93535694	93535894	-	1	NA	NA	NA	-87	NM_001003951	67935	Mm.65457	NM_001003951	ENSMUSG00000058019	Ces5a	1700081L16Rik|1700122C07Rik|BB081581|Ces7|Gm503|cauxin	carboxylesterase 5A	protein-coding	0.020000	0.482587	
mm_106667.1	chr11	121519234	121519434	-	1	NA	NA	NA	8	NM_178763	319530	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.040000	0.577114	
mm_133758.1	chr16	94454378	94454578	+	1	NA	NA	NA	72151	NM_007834	13185	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	Down syndrome critical region gene 3	protein-coding	0.005000	0.507463	
mm_95836.1	chr11	57011630	57011830	+	1	NA	NA	NA	112	NM_008165	14799	Mm.4920	NM_008165	ENSMUSG00000020524	Gria1	2900051M01Rik|Glr-1|Glr1|GluA1|GluR-A|GluRA|Glur-1|Glur1|HIPA1|gluR-K1	glutamate receptor, ionotropic, AMPA1 (alpha 1)	protein-coding	0.030000	0.577114	
mm_38097.1	chr4	134245458	134245658	-	1	NA	NA	NA	33	NM_024215	68040	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	0.095000	0.636816	
mm_135341.1	chr16	42340610	42340810	-	1	NA	NA	NA	-59	NM_008083	14432	Mm.1222	NM_008083	ENSMUSG00000047261	Gap43	B-50|Basp2|GAP-43	growth associated protein 43	protein-coding	0.025000	0.567164	
mm_34497.1	chr4	148594426	148594626	+	1	NA	NA	NA	3013	NM_009272	20810	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	0.020000	0.552239	
mm_79094.1	chr9	46242804	46243004	+	1	NA	NA	NA	2060	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.035000	0.582090	
mm_82283.1	chr9	7593306	7593506	-	1	NA	NA	NA	22010	NM_001310717	234911	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.000000	0.368159	
mm_24879.1	chr3	95994009	95994209	+	1	NA	NA	NA	1730	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.010000	0.522388	7(CCTTTTAGACAA,+,0.00)
mm_130342.1	chr15	97731366	97731566	-	1	NA	NA	NA	-61	NM_001168693	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.000000	0.537313	
mm_98419.1	chr11	94638754	94638954	+	1	NA	NA	NA	9030	NM_133807	98238	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	0.005000	0.467662	
mm_133035.1	chr16	57353010	57353210	+	1	NA	NA	NA	-167	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.030000	0.522388	
mm_54791.1	chr6	41636251	41636451	-	1	NA	NA	NA	54	NM_022413	64177	Mm.296889	NM_022413	ENSMUSG00000029868	Trpv6	CAT|CaT1|Cac|Ecac2|Otrpc3	transient receptor potential cation channel, subfamily V, member 6	protein-coding	0.010000	0.582090	
mm_29694.1	chr3	123114147	123114347	-	1	NA	NA	NA	-79260	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.020000	0.487562	
mm_41570.1	chr5	93167517	93167717	+	1	NA	NA	NA	38878	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.025000	0.552239	
mm_154887.1	chrX	20797707	20797907	+	1	NA	NA	NA	-50736	NM_009703	11836	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	0.015000	0.616915	
mm_131799.1	chr16	22899121	22899321	+	1	NA	NA	NA	-4835	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.010000	0.522388	
mm_7128.1	chr1	90969519	90969719	-	1	NA	NA	NA	1	NM_008998	19329	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	0.025000	0.552239	
mm_24082.1	chr3	87952951	87953151	+	1	NA	NA	NA	4358	NM_007759	12904	Mm.4757	NM_007759	ENSMUSG00000004885	Crabp2	AI893628|Crabp-2|CrabpII	cellular retinoic acid binding protein II	protein-coding	0.040000	0.537313	
mm_125043.1	chr15	25779916	25780116	+	1	NA	NA	NA	-63282	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.045000	0.572139	
mm_118117.1	chr13	104036482	104036682	-	1	NA	NA	NA	73032	NM_029447	75805	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	0.015000	0.552239	
mm_17501.1	chr2	28840216	28840416	-	1	NA	NA	NA	44	NM_172977	269252	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	0.100000	0.676617	
mm_71913.1	chr8	70131224	70131424	+	1	NA	NA	NA	-3	NR_104434	75692	Mm.161167	NM_001025586	ENSMUSG00000071078	Nr2c2ap	2310073E15Rik	nuclear receptor 2C2-associated protein	protein-coding	0.080000	0.587065	-58(GGCCCTTTAAGA,-,0.00),-57(GCCCTTTAAGAG,-,0.00),-56(CCCTTTAAGAGG,-,0.00),-55(CCTTTAAGAGGC,+,0.00)
mm_46298.1	chr5	100429413	100429613	-	1	NA	NA	NA	22	NR_034038	100503199	Mm.392282	NR_034038	ENSMUSG00000097772	5430416N02Rik	100041797|Adapt33|Gm3514	RIKEN cDNA 5430416N02 gene	ncRNA	0.080000	0.587065	-38(GCGCCTTTAAGG,-,0.00),-37(CGCCTTTAAGGG,-,0.00),-36(GCCTTTAAGGGC,+,0.00),-36(GCCTTTAAGGGC,-,0.00),-35(CCTTTAAGGGCC,+,0.00)
mm_146896.1	chr18	29496469	29496669	-	1	NA	NA	NA	-153	NR_045391	78058	Mm.416952	NR_045391		4930578E11Rik	-	RIKEN cDNA 4930578E11 gene	ncRNA	0.015000	0.507463	
mm_29499.1	chr3	116006349	116006549	-	1	NA	NA	NA	957	NM_023214	66500	Mm.34550	NM_023214	ENSMUSG00000054414	Slc30a7	1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2	solute carrier family 30 (zinc transporter), member 7	protein-coding	0.005000	0.368159	
mm_81646.1	chr9	110953065	110953265	+	1	NA	NA	NA	1620	NM_028838	74249	Mm.307615	NM_028838	ENSMUSG00000032495	Lrrc2	2400002D05Rik|4933431K03Rik	leucine rich repeat containing 2	protein-coding	0.000000	0.472637	
mm_51978.1	chr6	91904143	91904343	+	1	NA	NA	NA	10	NM_198668	381798	Mm.444785	NM_198668	ENSMUSG00000034063	4930590J08Rik	Gm1071	RIKEN cDNA 4930590J08 gene	protein-coding	0.005000	0.457711	
mm_17584.1	chr2	30415519	30415719	-	1	NA	NA	NA	129	NM_007760	12908	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.105000	0.726368	
mm_13511.1	chr2	109899201	109899401	+	1	NA	NA	NA	8423	NM_011699	22343	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	0.005000	0.333333	
mm_169302.1	chr14	103228551	103228751	+	1	NA	NA	NA	118149	NM_207215	105689	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.015000	0.606965	
mm_103271.1	chr11	72037408	72037608	-	1	NA	NA	NA	1	NM_053245	114230	Mm.95707	NM_053245	ENSMUSG00000040554	Aipl1	A930007I01Rik	aryl hydrocarbon receptor-interacting protein-like 1	protein-coding	0.010000	0.542289	
mm_27591.1	chr3	59130553	59130753	-	1	NA	NA	NA	109	NM_001008497	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.020000	0.492537	-80(GGGGTTAAAAGG,-,0.00)
mm_26592.1	chr3	151437839	151438039	+	1	NA	NA	NA	57	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.055000	0.636816	
mm_145551.1	chr18	60810244	60810444	+	1	NA	NA	NA	-1732	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.030000	0.552239	
mm_78437.1	chr9	32040320	32040520	+	1	NA	NA	NA	-75716	NM_001195632	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.005000	0.373134	
mm_103672.1	chr11	79146318	79146518	-	1	NA	NA	NA	-64	NM_013571	16706	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb	kinase suppressor of ras 1	protein-coding	0.095000	0.696517	
mm_164282.1	chr15	102471708	102471908	+	1	NA	NA	NA	1176	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.000000	0.343284	
mm_49735.1	chr6	34745610	34745810	+	1	NA	NA	NA	-34722	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.045000	0.537313	
mm_22118.1	chr2	170151593	170151793	-	1	NA	NA	NA	-9018	NM_001159683	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.025000	0.512438	
mm_2881.1	chr1	131828253	131828453	+	1	NA	NA	NA	341	NM_173865	98396	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	0.060000	0.671642	
mm_172669.1	chr8	43603696	43603896	-	1	NA	NA	NA	23389	NM_001025240	384813	Mm.383319	NM_001025240	ENSMUSG00000050190	Gm5346	EG384813	predicted gene 5346	protein-coding	0.040000	0.567164	
mm_78808.1	chr9	44067003	44067203	+	1	NA	NA	NA	82	NM_198092	53376	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.090000	0.706468	
mm_68606.1	chr7	116264177	116264377	-	1	NA	NA	NA	-26501	NM_001305186	233765	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.025000	0.592040	-14(CCTTTTCTGGGC,+,0.00)
mm_46946.1	chr5	114921856	114922056	-	1	NA	NA	NA	-1284	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.040000	0.582090	
mm_91666.1	chr10	43108756	43108956	-	1	NA	NA	NA	65674	NM_175407	109205	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis-binding protein homolog (Drosophila)	protein-coding	0.035000	0.358209	
mm_65734.1	chr7	28382884	28383084	-	1	NA	NA	NA	-3756	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.030000	0.497512	49(CCACATAAAGGG,-,0.00)
mm_90898.1	chr10	10558011	10558211	-	1	NA	NA	NA	96	NM_026405	67844	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0.105000	0.671642	87(ACCTCTTTAAGG,-,0.00)
mm_21221.1	chr2	155826373	155826573	-	1	NA	NA	NA	452	NM_010579	16418	Mm.271674	NM_010579	ENSMUSG00000027613	Eif6	1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding	0.085000	0.651741	
mm_20432.1	chr2	129306416	129306616	-	1	NA	NA	NA	3456	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.025000	0.437811	
mm_106666.1	chr11	121519204	121519404	-	1	NA	NA	NA	38	NM_178763	319530	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.035000	0.552239	
mm_66634.1	chr7	45524742	45524942	-	1	NA	NA	NA	1426	NM_008654	17872	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	0.015000	0.562189	
mm_114330.1	chr13	60640917	60641117	+	1	NA	NA	NA	38806	NM_134062	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.015000	0.283582	
mm_138699.1	chr17	35994416	35994616	+	1	NA	NA	NA	12	NR_015618	77810	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0.070000	0.517413	-91(CCTTTAAGAAGG,+,0.00),60(CCTTTTAAAGTC,+,0.00)
mm_164764.1	chr17	85620980	85621180	-	1	NA	NA	NA	246	NM_011381	20473	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0.050000	0.651741	
mm_171968.1	chr5	87737104	87737304	-	1	NA	NA	NA	-37246	NM_001304768	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.005000	0.378109	
mm_99888.1	chr11	109485572	109485772	+	1	NA	NA	NA	-12076	NM_001029842	104681	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.025000	0.542289	
mm_84428.1	chr9	65884947	65885147	-	1	NA	NA	NA	126	NM_001170907	56404	Mm.208379	NM_019797	ENSMUSG00000032386	Trip4	4930558E03Rik|ASC-1|Asc1|BB191711	thyroid hormone receptor interactor 4	protein-coding	0.090000	0.646766	
mm_44931.1	chr5	36277663	36277863	-	1	NA	NA	NA	-23807	NR_106162	102465792		NR_106162	ENSMUSG00000098884	Mir7689	Gm27434|mmu-mir-7689	microRNA 7689	ncRNA	0.005000	0.427861	
mm_4194.1	chr1	171225586	171225786	+	1	NA	NA	NA	632	NM_013474	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.015000	0.492537	
mm_8458.1	chr1	153186012	153186212	-	1	NA	NA	NA	335	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.070000	0.597015	
mm_116475.1	chr13	43547751	43547951	-	1	NA	NA	NA	12340	NM_001081059	76137	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0.030000	0.432836	
mm_112963.1	chr13	21180852	21181052	+	1	NA	NA	NA	1021	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.110000	0.701493	
mm_157040.1	chrX	7967746	7967946	-	1	NA	NA	NA	64	NM_008089	14460	Mm.335973	NM_008089	ENSMUSG00000031162	Gata1	Gata-1|Gf-1|eryf1	GATA binding protein 1	protein-coding	0.015000	0.592040	
mm_131080.1	chr16	4738623	4738823	+	1	NA	NA	NA	-2890	NM_010443	15369	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.010000	0.353234	
mm_117126.1	chr13	60904745	60904945	-	1	NA	NA	NA	2	NM_026429	116913	Mm.443229	NM_026429	ENSMUSG00000062705	Tpbpb	1600012N09Rik	trophoblast specific protein beta	protein-coding	0.005000	0.477612	
mm_165510.1	chr2	172398118	172398318	+	1	NA	NA	NA	4424	NM_001276423	320664	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.015000	0.517413	
mm_127159.1	chr15	98632302	98632502	+	1	NA	NA	NA	74	NM_001044741	12297	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0.075000	0.701493	
mm_105972.1	chr11	115514012	115514212	-	1	NA	NA	NA	258	NM_008258	15374	Mm.1775	NM_008258	ENSMUSG00000020737	Hn1	-	hematological and neurological expressed sequence 1	protein-coding	0.095000	0.691542	
mm_114204.1	chr13	56073524	56073724	+	1	NA	NA	NA	61926	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.025000	0.398010	
mm_147758.1	chr18	61259888	61260088	-	1	NA	NA	NA	39489	NM_146086	225600	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	0.055000	0.507463	
mm_125485.1	chr15	54600938	54601138	+	1	NA	NA	NA	29672	NM_178920	105853	Mm.410994	NM_178920	ENSMUSG00000024479	Mal2	AI461653	mal, T cell differentiation protein 2	protein-coding	0.010000	0.283582	-83(CTTTTTAAATGC,+,0.00)
mm_134731.1	chr16	22898996	22899196	-	1	NA	NA	NA	-4710	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.015000	0.567164	
mm_128038.1	chr15	25364707	25364907	-	1	NA	NA	NA	48957	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.095000	0.651741	
mm_89553.1	chr10	94750257	94750457	+	1	NA	NA	NA	61567	NM_029852	77048	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	0.015000	0.368159	
mm_100223.1	chr11	117109857	117110057	+	1	NA	NA	NA	-5215	NR_029459	74136	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.005000	0.457711	
mm_163421.1	chr12	80367382	80367582	+	1	NA	NA	NA	24195	NR_037207	100526530		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0.005000	0.497512	
mm_162400.1	chr1	84839812	84840012	+	1	NA	NA	NA	71	NM_025386	66153	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.060000	0.606965	
mm_55791.1	chr6	82705269	82705469	-	1	NA	NA	NA	-52504	NM_025882	66979	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	0.015000	0.527363	
mm_10224.1	chr2	6209765	6209965	+	1	NA	NA	NA	3129	NM_024208	67856	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0.000000	0.512438	
mm_164413.1	chr16	38396307	38396507	+	1	NA	NA	NA	34217	NM_022318	64082	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.035000	0.542289	
mm_67715.1	chr7	89980872	89981072	-	1	NA	NA	NA	4	NM_021876	13626	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	ENSMUSG00000039373|l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	0.060000	0.597015	
mm_87795.1	chr10	60299762	60299962	+	1	NA	NA	NA	15401	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.040000	0.582090	
mm_13955.1	chr2	121305888	121306088	+	1	NA	NA	NA	10534	NM_001173506	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.035000	0.621891	
mm_57511.1	chr6	125481671	125481871	-	1	NA	NA	NA	12984	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.015000	0.532338	
mm_50943.1	chr6	57824547	57824747	+	1	NA	NA	NA	478	NM_146168	232023	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.060000	0.611940	-32(GCCTCTAAAAGC,-,0.00),-31(CCTCTAAAAGCC,+,0.00)
mm_54859.1	chr6	42597208	42597408	-	1	NA	NA	NA	64	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.010000	0.457711	
mm_36425.1	chr4	82065791	82065991	-	1	NA	NA	NA	511	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	0.015000	0.517413	
mm_87575.1	chr10	56388259	56388459	+	1	NA	NA	NA	11059	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.040000	0.537313	
mm_35537.1	chr4	41314783	41314983	-	1	NA	NA	NA	18	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.095000	0.636816	
mm_92553.1	chr10	79766718	79766918	-	1	NA	NA	NA	134	NM_144528	70294	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0.175000	0.791045	
mm_127763.1	chr15	103538005	103538205	+	1	NA	NA	NA	-113	NM_021391	58200	Mm.143788	NM_021391	ENSMUSG00000022490	Ppp1r1a	0610038N18Rik|I-1	protein phosphatase 1, regulatory (inhibitor) subunit 1A	protein-coding	0.075000	0.656716	
mm_6389.1	chr1	72849209	72849409	-	1	NA	NA	NA	23922	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.025000	0.572139	
mm_134814.1	chr16	25057885	25058085	-	1	NA	NA	NA	-1654	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.005000	0.467662	
mm_120566.1	chr14	68661335	68661535	+	1	NA	NA	NA	-5593	NM_183366	13522	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	0.010000	0.402985	
mm_1057.1	chr1	58973452	58973652	+	1	NA	NA	NA	-19	NM_172656	227154	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	0.085000	0.671642	
mm_166649.1	chr6	86599915	86600115	-	1	NA	NA	NA	-28159	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.005000	0.502488	
mm_129987.1	chr15	86067371	86067571	-	1	NA	NA	NA	8744	NM_001205353	223752	Mm.24442	NM_172611	ENSMUSG00000035900	Gramd4	9930016O13	GRAM domain containing 4	protein-coding	0.025000	0.527363	
mm_108322.1	chr12	79766768	79766968	+	1	NA	NA	NA	157865	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.000000	0.452736	
mm_24359.1	chr3	90068970	90069170	+	1	NA	NA	NA	-950	NR_030543	100124481		NR_030543	ENSMUSG00000077996	Mir190b	Mirn190b|mir-190b	microRNA 190b	ncRNA	0.005000	0.492537	
mm_23690.1	chr3	68691539	68691739	+	1	NA	NA	NA	215	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.030000	0.562189	4(ACCCATTAAGGG,-,0.00)
mm_46323.1	chr5	100798441	100798641	-	1	NA	NA	NA	59	NM_001081107	191578	Mm.21469	NM_180984	ENSMUSG00000035266	Helq	AU021725|D430018E21Rik|Hel308	helicase, POLQ-like	protein-coding	0.095000	0.691542	
mm_618.1	chr1	40084667	40084867	+	1	NA	NA	NA	-1	NM_010555	16178	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.000000	0.552239	
mm_104112.1	chr11	86722148	86722348	-	1	NA	NA	NA	35244	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.005000	0.407960	
mm_164612.1	chr17	31161296	31161496	+	1	NA	NA	NA	3657	NM_009362	21784	Mm.2854	NM_009362	ENSMUSG00000024032	Tff1	Bcei|PS2	trefoil factor 1	protein-coding	0.015000	0.323383	
mm_93718.1	chr10	119076066	119076266	-	1	NA	NA	NA	-16739	NR_045348	73400	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	0.025000	0.537313	
mm_86989.1	chr10	25489610	25489810	+	1	NA	NA	NA	46562	NM_001195596	100504474	Mm.46323	NM_001195596	ENSMUSG00000096546	Smlr1	2010003K15Rik	small leucine-rich protein 1	protein-coding	0.000000	0.398010	
mm_4725.1	chr1	181251176	181251376	+	1	NA	NA	NA	-39298	NM_145514	226757	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.015000	0.462687	
mm_23087.1	chr3	36863085	36863285	+	1	NA	NA	NA	79	NM_172679	229227	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0.090000	0.666667	
mm_127634.1	chr15	102471077	102471277	+	1	NA	NA	NA	545	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.090000	0.706468	
mm_35241.1	chr4	19877236	19877436	-	1	NA	NA	NA	45230	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.005000	0.393035	
mm_104806.1	chr11	98775177	98775377	-	1	NA	NA	NA	100	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.065000	0.621891	
mm_75963.1	chr8	71723193	71723393	-	1	NA	NA	NA	2388	NR_131256	74015	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.030000	0.631841	
mm_42177.1	chr5	112261788	112261988	+	1	NA	NA	NA	6068	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.005000	0.412935	
mm_157165.1	chrX	9467048	9467248	-	1	NA	NA	NA	2176	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.422886	
mm_5804.1	chr1	52232317	52232517	-	1	NA	NA	NA	815	NM_001081081	14660	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.110000	0.731343	
mm_115711.1	chr13	15802533	15802733	-	1	NA	NA	NA	-3	NR_045507	71071	Mm.380845	NR_045507		4933412O06Rik	-	RIKEN cDNA 4933412O06 gene	ncRNA	0.030000	0.467662	
mm_114704.1	chr13	83524506	83524706	+	1	NA	NA	NA	-137	NM_001347567	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.025000	0.517413	
mm_92913.1	chr10	83636252	83636452	-	1	NA	NA	NA	12312	NM_145220	216190	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.005000	0.437811	
mm_143393.1	chr17	70393458	70393658	-	1	NA	NA	NA	-31234	NM_177639	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.015000	0.497512	-21(CATCATAAAAGG,-,0.00)
mm_80565.1	chr9	83834610	83834810	+	1	NA	NA	NA	21	NM_001284272	22137	Mm.1904	NM_009445	ENSMUSG00000038379	Ttk	AL022661|Esk1|Mps1|PYT|esk	Ttk protein kinase	protein-coding	0.075000	0.631841	
mm_135085.1	chr16	34514080	34514280	-	1	NA	NA	NA	-153	NM_177357	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.025000	0.601990	
mm_24928.1	chr3	96559029	96559229	+	1	NA	NA	NA	1172	NM_023719	56338	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.020000	0.442786	-47(ATCCTTTAAAGG,-,0.00),-46(TCCTTTAAAGGA,+,0.00),-46(TCCTTTAAAGGA,-,0.00),-45(CCTTTAAAGGAA,+,0.00)
mm_135330.1	chr16	38800251	38800451	-	1	NA	NA	NA	-148	NM_178924	22268	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0.025000	0.577114	
mm_77854.1	chr9	5310210	5310410	+	1	NA	NA	NA	1461	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.000000	0.288557	
mm_43239.1	chr5	130029291	130029491	+	1	NA	NA	NA	85	NM_007761	12909	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	0.115000	0.666667	
mm_30659.1	chr4	9269210	9269410	+	1	NA	NA	NA	-7	NM_028940	74438	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.025000	0.572139	
mm_81918.1	chr9	120114901	120115101	+	1	NA	NA	NA	4602	NM_144793	208638	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0.010000	0.532338	
mm_40154.1	chr5	35413263	35413463	+	1	NA	NA	NA	24246	NM_010445	15371	Mm.358606	NM_010445	ENSMUSG00000067438	Hmx1	Nkx5-3	H6 homeobox 1	protein-coding	0.005000	0.512438	
mm_126214.1	chr15	78905696	78905896	+	1	NA	NA	NA	6028	NM_009164	20401	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	0.015000	0.601990	
mm_144062.1	chr17	90798024	90798224	-	1	NA	NA	NA	-4648	NR_136930	102634634		NR_136930		Gm20491	-	enolase 1, alpha non-neuron pseudogene	pseudo	0.005000	0.353234	
mm_133415.1	chr16	85546902	85547102	+	1	NA	NA	NA	3371	NM_144853	224405	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding	0.010000	0.412935	
mm_121925.1	chr14	23589732	23589932	-	1	NA	NA	NA	414373	NM_001253375	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.005000	0.189055	-79(GGCTTTTTAAAA,-,0.00)
mm_169868.1	chr16	3535741	3535941	+	1	NA	NA	NA	-56557	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.005000	0.507463	
mm_42161.1	chr5	112257369	112257569	+	1	NA	NA	NA	1649	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.010000	0.661692	
mm_126837.1	chr15	89020248	89020448	+	1	NA	NA	NA	37354	NM_031260	83456	Mm.358791	NM_031260	ENSMUSG00000015365	Mov10l1	CHAMP|Csm	Moloney leukemia virus 10-like 1	protein-coding	0.030000	0.497512	
mm_10332.1	chr2	11535616	11535816	+	1	NA	NA	NA	18213	NM_001177758	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.060000	0.601990	
mm_165637.1	chr3	73643696	73643896	+	1	NA	NA	NA	64619	NM_009738	12038	Mm.250719	NM_009738	ENSMUSG00000027792	Bche	C730038G20Rik	butyrylcholinesterase	protein-coding	0.010000	0.343284	
mm_152313.1	chr19	9899333	9899533	-	1	NA	NA	NA	100	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.120000	0.621891	
mm_138382.1	chr17	35045029	35045229	+	1	NA	NA	NA	1493	NM_013600	17687	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	0.010000	0.517413	-37(TAACATAAAAGG,-,0.00)
mm_48765.1	chr5	148399724	148399924	-	1	NA	NA	NA	80	NM_007513	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.120000	0.701493	
mm_163150.1	chr11	83175171	83175371	+	1	NA	NA	NA	85	NM_001302559	20558	Mm.38192	NM_011410	ENSMUSG00000000204	Slfn4	AI450778	schlafen 4	protein-coding	0.045000	0.537313	
mm_168495.1	chr11	51455716	51455916	-	1	NA	NA	NA	-128941	NM_028398	72947	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.000000	0.487562	
mm_86175.1	chr9	119190156	119190356	-	1	NA	NA	NA	137	NM_001037749	382113	Mm.335525	NM_001037749	ENSMUSG00000070280	Slc22a14	Gm1128	solute carrier family 22 (organic cation transporter), member 14	protein-coding	0.015000	0.537313	
mm_43535.1	chr5	137333550	137333750	+	1	NA	NA	NA	-68	NM_031406	83704	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	0.065000	0.621891	
mm_52546.1	chr6	115934940	115935140	+	1	NA	NA	NA	3113	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.030000	0.532338	
mm_45354.1	chr5	65918102	65918302	-	1	NA	NA	NA	-48922	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.005000	0.442786	
mm_57330.1	chr6	124741010	124741210	-	1	NA	NA	NA	-31	NM_013535	14790	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.055000	0.587065	
mm_138837.1	chr17	39848467	39848667	+	1	NA	NA	NA	5570	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.150000	0.686567	
mm_124528.1	chr14	122233506	122233706	-	1	NA	NA	NA	32	NR_015532	68245	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.035000	0.597015	
mm_93019.1	chr10	87830677	87830877	-	1	NA	NA	NA	-27488	NM_001314010	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.005000	0.462687	33(GCTTTTATATCA,+,0.00)
mm_77111.1	chr8	111081738	111081938	-	1	NA	NA	NA	-130	NM_181549	353287	Mm.135495	NM_181549	ENSMUSG00000033633	Clec18a	Mrcl	C-type lectin domain family 18, member A	protein-coding	0.015000	0.542289	
mm_65509.1	chr7	25754535	25754735	-	1	NA	NA	NA	66	NM_178089	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.090000	0.716418	
mm_65735.1	chr7	28383037	28383237	-	1	NA	NA	NA	-3909	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.040000	0.592040	
mm_73207.1	chr8	95702955	95703155	+	1	NA	NA	NA	18	NM_145602	234593	Mm.29846	NM_145602	ENSMUSG00000036564	Ndrg4	D8Bwg1337e|Ndr1-rs|Ndr4|R74996|SMAP-8	N-myc downstream regulated gene 4	protein-coding	0.040000	0.616915	
mm_93825.1	chr10	121493942	121494142	-	1	NA	NA	NA	-17792	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.010000	0.467662	
mm_52700.1	chr6	119236489	119236689	+	1	NA	NA	NA	63	NM_001347427	319734	Mm.440773	NM_001033382	ENSMUSG00000041460	Cacna2d4	5730412N02Rik|BE686333	calcium channel, voltage-dependent, alpha 2/delta subunit 4	protein-coding	0.005000	0.606965	
mm_141964.1	chr17	35121144	35121344	-	1	NA	NA	NA	48	NM_001303476	13001	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	0.080000	0.651741	
mm_38092.1	chr4	134238248	134238448	-	1	NA	NA	NA	51	NM_001081047	194231	Mm.331958	NM_001081047	ENSMUSG00000028841	Cnksr1	BC037758	connector enhancer of kinase suppressor of Ras 1	protein-coding	0.065000	0.701493	
mm_83086.1	chr9	40294992	40295192	-	1	NA	NA	NA	25876	NM_178227	235281	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.005000	0.477612	-81(CCTTTAATGTGG,+,0.00)
mm_172682.1	chr8	52308571	52308771	+	1	NA	NA	NA	-1203031	NM_001205054	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.050000	0.626866	
mm_106279.1	chr11	118143779	118143979	-	1	NA	NA	NA	-14660	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.015000	0.452736	
mm_127739.1	chr15	103298851	103299051	+	1	NA	NA	NA	11487	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.005000	0.487562	
mm_11696.1	chr2	35883540	35883740	+	1	NA	NA	NA	64450	NR_040618	77665	Mm.400558	NR_040618	ENSMUSG00000086449	9030204H09Rik	-	RIKEN cDNA 9030204H09 gene	ncRNA	0.010000	0.492537	
mm_21019.1	chr2	152397909	152398109	-	1	NA	NA	NA	37	NM_011438	20667	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.160000	0.781095	
mm_114941.1	chr13	96542420	96542620	+	1	NA	NA	NA	59	NM_012048	27015	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	0.060000	0.621891	-57(GCCTTTAGGCGC,+,0.00)
mm_111916.1	chr12	108873179	108873379	-	1	NA	NA	NA	19919	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.015000	0.582090	
mm_24129.1	chr3	88207180	88207380	+	1	NA	NA	NA	-7891	NR_037276	100526540		NR_037276	ENSMUSG00000092988	Mir3093	mir-3093|mmu-mir-3093	microRNA 3093	ncRNA	0.055000	0.562189	
mm_59135.1	chr7	24081818	24082018	+	1	NA	NA	NA	21	NM_001289637	210135	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	0.050000	0.542289	
mm_81546.1	chr9	110281163	110281363	+	1	NA	NA	NA	-24	NR_105744	102465959		NR_105744	ENSMUSG00000098973	Mir6236	Gm27547|mmu-mir-6236	microRNA 6236	ncRNA	0.030000	0.477612	
mm_88272.1	chr10	74978534	74978734	+	1	NA	NA	NA	11403	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	0.000000	0.398010	
mm_156641.1	chrX	157598736	157598936	+	1	NA	NA	NA	-121	NM_172307	270669	Mm.37577	NM_172307	ENSMUSG00000046873	Mbtps2	9630032G22Rik|AI662535	membrane-bound transcription factor peptidase, site 2	protein-coding	0.075000	0.482587	
mm_93321.1	chr10	99132232	99132432	-	1	NA	NA	NA	24197	NM_015737	14426	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.015000	0.567164	
mm_108302.1	chr12	79303228	79303428	+	1	NA	NA	NA	5977	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.025000	0.477612	
mm_9154.1	chr1	170927475	170927675	-	1	NA	NA	NA	8	NM_001160215	98752	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0.010000	0.492537	
mm_164248.1	chr15	97784422	97784622	+	1	NA	NA	NA	157	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.105000	0.696517	
mm_76894.1	chr8	105708098	105708298	-	1	NA	NA	NA	-30	NM_198299	102124	Mm.276087	NM_198299	ENSMUSG00000013155	Enkd1	AI606951|E130303B06Rik	enkurin domain containing 1	protein-coding	0.035000	0.577114	
mm_56622.1	chr6	112721604	112721804	-	1	NA	NA	NA	-25034	NM_001167730	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.010000	0.398010	
mm_76740.1	chr8	95202680	95202880	-	1	NA	NA	NA	-60240	NM_001145831	16582	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.025000	0.582090	
mm_148648.1	chr19	5493320	5493520	+	1	NA	NA	NA	2965	NM_007687	12631	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.020000	0.572139	
mm_22010.1	chr2	167775296	167775496	-	1	NA	NA	NA	84219	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.045000	0.597015	
mm_139139.1	chr17	47509473	47509673	+	1	NA	NA	NA	4522	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.472637	
mm_84037.1	chr9	57765761	57765961	-	1	NA	NA	NA	-1	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.085000	0.606965	
mm_167620.1	chr9	57770566	57770766	+	1	NA	NA	NA	-4806	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.005000	0.388060	
mm_1752.1	chr1	75507132	75507332	+	1	NA	NA	NA	155	NM_010564	16322	Mm.1100	NM_010564	ENSMUSG00000032968	Inha	AW555078	inhibin alpha	protein-coding	0.025000	0.606965	
mm_144676.1	chr18	34751679	34751879	+	1	NA	NA	NA	-246	NM_009860	12532	Mm.286602	NM_009860	ENSMUSG00000044201	Cdc25c	Cdc25	cell division cycle 25C	protein-coding	0.050000	0.487562	
mm_7211.1	chr1	93101716	93101916	-	1	NA	NA	NA	58	NM_001294149	16560	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.080000	0.681592	
mm_22841.1	chr3	27938559	27938759	+	1	NA	NA	NA	-21	NM_001164056	18805	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.135000	0.786070	
mm_142138.1	chr17	35969449	35969649	-	1	NA	NA	NA	201	NM_013854	224742	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	0.090000	0.681592	
mm_26937.1	chr3	20263656	20263856	-	1	NA	NA	NA	11977	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.020000	0.417910	
mm_7733.1	chr1	130764002	130764202	-	1	NA	NA	NA	32126	NM_177604	212439	Mm.268547	NM_177604	ENSMUSG00000042510	AA986860	E030025M07|Sarg	expressed sequence AA986860	protein-coding	0.020000	0.552239	
mm_47954.1	chr5	135544975	135545175	-	1	NA	NA	NA	47	NM_146001	215114	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.085000	0.666667	
mm_124188.1	chr14	97052858	97053058	-	1	NA	NA	NA	-533924	NM_053105	93688	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding	0.010000	0.378109	-32(CCTTTTATGTCA,+,0.00),69(ATTTTTAAAAGG,-,0.00)
mm_123285.1	chr14	61439719	61439919	-	1	NA	NA	NA	128	NM_008466	16648	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0.155000	0.741294	
mm_115305.1	chr13	112288402	112288602	+	1	NA	NA	NA	-16	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.035000	0.537313	
mm_62329.1	chr7	100493222	100493422	+	1	NA	NA	NA	-36	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.095000	0.676617	
mm_134570.1	chr16	20364021	20364221	-	1	NA	NA	NA	-38717	NM_183158	224044	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.010000	0.547264	
mm_93611.1	chr10	117238502	117238702	-	1	NA	NA	NA	79	NM_029906	77397	Mm.118350	NM_029906	ENSMUSG00000020177	9530003J23Rik	Lyzf1	RIKEN cDNA 9530003J23 gene	protein-coding	0.035000	0.537313	-35(GCTTAAATACTG,+,0.00)
mm_6391.1	chr1	72852196	72852396	-	1	NA	NA	NA	22569	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.020000	0.557214	
mm_59909.1	chr7	30413688	30413888	+	1	NA	NA	NA	0	NM_011662	22177	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0.015000	0.616915	
mm_60987.1	chr7	49160606	49160806	+	1	NA	NA	NA	-85483	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.015000	0.552239	
mm_165577.1	chr3	27222195	27222395	+	1	NA	NA	NA	39291	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.010000	0.502488	
mm_87309.1	chr10	42761387	42761587	+	1	NA	NA	NA	-9	NM_153055	140740	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0.135000	0.721393	
mm_83628.1	chr9	48911030	48911230	-	1	NA	NA	NA	-31	NM_001099644	15561	Mm.4831	NM_013561	ENSMUSG00000032269	Htr3a	5-HT3	5-hydroxytryptamine (serotonin) receptor 3A	protein-coding	0.030000	0.606965	
mm_146765.1	chr18	17784271	17784471	-	1	NA	NA	NA	-203381	NR_045374	75162	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.005000	0.467662	
mm_100361.1	chr11	118476864	118477064	+	1	NA	NA	NA	4	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.085000	0.691542	
mm_59080.1	chr7	19665366	19665566	+	1	NA	NA	NA	-436	NM_019649	56457	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0.070000	0.502488	
mm_32527.1	chr4	108878977	108879177	+	1	NA	NA	NA	7	NM_023537	69908	Mm.41580	NM_023537	ENSMUSG00000003411	Rab3b	2610528C18Rik	RAB3B, member RAS oncogene family	protein-coding	0.055000	0.636816	
mm_88761.1	chr10	80330204	80330404	+	1	NA	NA	NA	159	NM_139292	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.105000	0.661692	
mm_51790.1	chr6	88205769	88205969	+	1	NA	NA	NA	7205	NM_008090	14461	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.010000	0.323383	
mm_99025.1	chr11	98938282	98938482	+	1	NA	NA	NA	664	NM_001177302	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.035000	0.631841	
mm_34549.1	chr4	149586372	149586572	+	1	NA	NA	NA	4	NM_023051	65945	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0.175000	0.815920	
mm_120518.1	chr14	66729022	66729222	+	1	NA	NA	NA	93871	NM_001271760	11549	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	0.000000	0.318408	0(CTTTATATATGC,+,0.00)
mm_67497.1	chr7	80768346	80768546	-	1	NA	NA	NA	34885	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.020000	0.532338	
mm_20857.1	chr2	148408051	148408251	-	1	NA	NA	NA	37	NM_009378	21824	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	0.055000	0.572139	
mm_160024.1	chr6	130231526	130231726	-	1	NA	NA	NA	61	NM_014194	16638	Mm.441781	NM_014194	ENSMUSG00000067599	Klra7	LGL-1|Ly-49G.1|Ly-49G.2|Ly-49G.3|Ly49G.4|Ly49g|Ly49g1|Ly49g2	killer cell lectin-like receptor, subfamily A, member 7	protein-coding	0.005000	0.398010	
mm_49968.1	chr6	40768497	40768697	+	1	NA	NA	NA	118897	NM_139296	194357	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0.005000	0.398010	
mm_136278.1	chr16	91069001	91069201	-	1	NA	NA	NA	44	NM_001163695	74387	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.040000	0.567164	
mm_23181.1	chr3	40810026	40810226	+	1	NA	NA	NA	10175	NR_045576	20873	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo-like kinase 4	protein-coding	0.005000	0.467662	80(CCTTTTAAGTAC,+,0.00)
mm_8509.1	chr1	154542298	154542498	-	1	NA	NA	NA	183522	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.045000	0.517413	
mm_32736.1	chr4	116596639	116596839	+	1	NA	NA	NA	9	NM_001037916	622665	Mm.388905	NM_001037916	ENSMUSG00000034035	Ccdc17	-	coiled-coil domain containing 17	protein-coding	0.020000	0.432836	25(GTGTCTATAAGA,-,0.00),27(GTCTATAAGAGA,-,0.00)
mm_134703.1	chr16	22857349	22857549	-	1	NA	NA	NA	220	NM_001081368	70573	Mm.68291	NM_001081368	ENSMUSG00000004462	Tbccd1	5730478M09Rik|AU015083|BB165076	TBCC domain containing 1	protein-coding	0.065000	0.547264	
mm_35611.1	chr4	43384055	43384255	-	1	NA	NA	NA	2173	NM_001037709	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.000000	0.388060	
mm_107163.1	chr12	24651327	24651527	+	1	NA	NA	NA	56	NM_178357	194655	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	0.145000	0.776119	
mm_79473.1	chr9	56865011	56865211	+	1	NA	NA	NA	7	NM_139001	121021	Mm.41329	NM_139001	ENSMUSG00000032911	Cspg4	4732461B14Rik|AN2|NG2	chondroitin sulfate proteoglycan 4	protein-coding	0.090000	0.646766	
mm_9278.1	chr1	171634233	171634433	-	1	NA	NA	NA	7567	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.005000	0.477612	
mm_155189.1	chrX	56374720	56374920	+	1	NA	NA	NA	234	NR_028086	320237	Mm.233168	NM_183030		Smim10l2a	6330419J24Rik|Ncrna00086	small integral membrane protein 10 like 2A	ncRNA	0.105000	0.646766	
mm_54231.1	chr6	28228104	28228304	-	1	NA	NA	NA	33397	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.005000	0.393035	
mm_26452.1	chr3	142700935	142701135	+	1	NA	NA	NA	-13	NM_173763	229905	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0.065000	0.611940	
mm_60712.1	chr7	45277386	45277586	+	1	NA	NA	NA	-5387	NM_001033176	76713	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0.160000	0.751244	
mm_55909.1	chr6	83762393	83762593	-	1	NA	NA	NA	15	NR_105027	67934	Mm.126190	NR_105027	ENSMUSG00000099354	1700124L16Rik	-	RIKEN cDNA 1700124L16 gene	ncRNA	0.005000	0.482587	
mm_170623.1	chr19	7217492	7217692	-	1	NA	NA	NA	24	NM_007750	12868	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0.115000	0.631841	
mm_105006.1	chr11	100376830	100377030	-	1	NA	NA	NA	-20789	NM_010404	15114	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.040000	0.641791	
mm_173354.1	chrY	90813871	90814071	+	1	NA	NA	NA	25435	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.457711	
mm_22656.1	chr3	14871545	14871745	+	1	NA	NA	NA	8107	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.025000	0.621891	
mm_130838.1	chr15	101850685	101850885	-	1	NA	NA	NA	1	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.030000	0.552239	-34(CAGTATATAAGG,-,0.00)
mm_24925.1	chr3	96528513	96528713	+	1	NA	NA	NA	3428	NM_027126	69585	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0.030000	0.532338	
mm_12058.1	chr2	59338622	59338822	+	1	NA	NA	NA	47960	NR_040510	76676	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.035000	0.502488	
mm_93843.1	chr10	121626305	121626505	-	1	NA	NA	NA	-89	NM_001081056	73192	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	0.135000	0.746269	
mm_172365.1	chr7	121015572	121015772	-	1	NA	NA	NA	-18773	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.050000	0.492537	-26(GAACTTAAAAGG,-,0.00)
mm_108939.1	chr12	102005458	102005658	+	1	NA	NA	NA	29584	NM_016856	51786	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.020000	0.308458	
mm_87938.1	chr10	62885559	62885759	+	1	NA	NA	NA	-5645	NM_001253857	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.035000	0.512438	
mm_31025.1	chr4	40845674	40845874	+	1	NA	NA	NA	4364	NR_039584	100628614		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.015000	0.487562	-33(GGCTATATAAAC,-,0.00)
mm_125178.1	chr15	31572088	31572288	+	1	NA	NA	NA	3276	NM_181588	69574	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0.030000	0.507463	
mm_60808.1	chr7	45640332	45640532	+	1	NA	NA	NA	455	NM_172418	74490	Mm.107442	NM_172418	ENSMUSG00000042918	Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding	0.020000	0.552239	
mm_72714.1	chr8	84995884	84996084	+	1	NA	NA	NA	5389	NM_001167991	170833	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	0.050000	0.601990	
mm_147269.1	chr18	38929058	38929258	-	1	NA	NA	NA	-10459	NM_010197	14164	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0.020000	0.562189	
mm_42933.1	chr5	122942505	122942705	+	1	NA	NA	NA	-42255	NM_013910	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.015000	0.532338	
mm_38321.1	chr4	137336033	137336233	-	1	NA	NA	NA	21626	NM_009861	12540	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.005000	0.333333	
mm_56112.1	chr6	87510969	87511169	-	1	NA	NA	NA	-14742	NM_175476	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.005000	0.407960	84(CCATTTATACAC,+,0.00)
mm_51441.1	chr6	80070626	80070826	+	1	NA	NA	NA	51083	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.000000	0.328358	
mm_22423.1	chr2	181592613	181592813	-	1	NA	NA	NA	-252	NM_001164597	269401	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	0.150000	0.791045	
mm_22285.1	chr2	180203616	180203816	-	1	NA	NA	NA	22143	NM_001081171	16776	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0.010000	0.363184	
mm_74788.1	chr8	22185403	22185603	-	1	NA	NA	NA	316	NM_001004140	80986	Mm.22448	NM_001004140	ENSMUSG00000037725	Ckap2	AI461656|AW228814|LB1	cytoskeleton associated protein 2	protein-coding	0.080000	0.626866	
mm_58351.1	chr6	147389702	147389902	-	1	NA	NA	NA	-86069	NM_025911	67015	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding	0.010000	0.412935	
mm_18966.1	chr2	76807353	76807553	-	1	NA	NA	NA	132138	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.015000	0.517413	
mm_140755.1	chr17	17416316	17416516	-	1	NA	NA	NA	13730	NM_025681	66643	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.005000	0.527363	-34(CACTATAAAAGG,-,0.00)
mm_112339.1	chr12	116255939	116256139	-	1	NA	NA	NA	6986	NM_146039	217935	Mm.31382	NM_146039	ENSMUSG00000042050	Wdr60	D430033N04Rik	WD repeat domain 60	protein-coding	0.030000	0.527363	
mm_111981.1	chr12	110434932	110435132	-	1	NA	NA	NA	-12147	NM_001135001	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.030000	0.522388	
mm_160867.1	chr11	61761934	61762134	-	1	NA	NA	NA	54	NM_144806	212627	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0.105000	0.686567	
mm_13763.1	chr2	118388579	118388779	+	1	NA	NA	NA	62	NM_013719	27103	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	0.105000	0.741294	
mm_163217.1	chr11	101246847	101247047	+	1	NA	NA	NA	613	NM_019444	54409	Mm.260698	NM_019444	ENSMUSG00000001240	Ramp2	-	receptor (calcitonin) activity modifying protein 2	protein-coding	0.015000	0.522388	
mm_30967.1	chr4	33945417	33945617	+	1	NA	NA	NA	20885	NM_007726	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding	0.000000	0.358209	
mm_130029.1	chr15	88954294	88954494	-	1	NA	NA	NA	24	NM_172818	239591	Mm.86807	NM_172818	ENSMUSG00000022388	Ttll8	1700019P01Rik|4933401B17	tubulin tyrosine ligase-like family, member 8	protein-coding	0.050000	0.567164	
mm_166277.1	chr5	90768439	90768639	+	1	NA	NA	NA	21	NM_023785	57349	Mm.293614	NM_023785	ENSMUSG00000029372	Ppbp	2400003M24Rik|AI854500|CTAP3|CTAPIII|Cxcl7|LA-PF4|LDGF|MDGF|NAP-2|NAP-2-L1|Scyb7|TGB|TGB1|THBGB1|b-TG1|beta-TG	pro-platelet basic protein	protein-coding	0.015000	0.522388	-54(CAGTATAAAAAG,-,0.00),-32(GCATATAAAGCA,+,0.00)
mm_27057.1	chr3	27605610	27605810	-	1	NA	NA	NA	-20715	NR_037275	100526525		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.015000	0.492537	
mm_8387.1	chr1	151344346	151344546	-	1	NA	NA	NA	-52	NM_001039512	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.140000	0.736318	
mm_156666.1	chrX	158452438	158452638	+	1	NA	NA	NA	-409341	NM_177751	245684	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding	0.025000	0.407960	-30(AACTATTAAAAG,-,0.00),-7(CTTTTTAGGGGC,+,0.00)
mm_135687.1	chr16	52426906	52427106	-	1	NA	NA	NA	26075	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.015000	0.303483	
mm_97279.1	chr11	76012035	76012235	+	1	NA	NA	NA	12223	NM_198637	74230	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding	0.010000	0.477612	
mm_103596.1	chr11	78378937	78379137	-	1	NA	NA	NA	7571	NM_008238	15218	Mm.4496	NM_008238	ENSMUSG00000002057	Foxn1	D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude	forkhead box N1	protein-coding	0.025000	0.631841	
mm_99628.1	chr11	105092129	105092329	+	1	NA	NA	NA	10	NM_001081046	70894	Mm.87320	NM_001081046	ENSMUSG00000020690	Efcab3	4921510J17Rik	EF-hand calcium binding domain 3	protein-coding	0.030000	0.447761	
mm_129854.1	chr15	83172915	83173115	-	1	NA	NA	NA	-807	NM_029787	109754	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.030000	0.477612	
mm_102037.1	chr11	51857505	51857705	-	1	NA	NA	NA	-124	NM_199299	76901	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.030000	0.512438	-91(CCCTCTAAAGAG,-,0.00),-64(TGGTTTAAAAAG,-,0.00)
mm_121092.1	chr14	99301709	99301909	+	1	NA	NA	NA	3118	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.020000	0.502488	
mm_110604.1	chr12	56536011	56536211	-	1	NA	NA	NA	797	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.065000	0.711443	
mm_155762.1	chrX	96167901	96168101	+	1	NA	NA	NA	-71925	NR_030718	100038363	Mm.30815	NR_030718	ENSMUSG00000078122	F630028O10Rik	ENSMUSG00000065522|Gm14924|OTTMUSG00000018496|mir-223	RIKEN cDNA F630028O10 gene	ncRNA	0.000000	0.263682	
mm_45896.1	chr5	88675453	88675653	-	1	NA	NA	NA	27	NM_001098476	231413	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.080000	0.666667	
mm_43670.1	chr5	138774177	138774377	+	1	NA	NA	NA	19196	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.010000	0.472637	
mm_120613.1	chr14	70207644	70207844	+	1	NA	NA	NA	-73	NM_011366	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.010000	0.507463	
mm_108025.1	chr12	73649183	73649383	+	1	NA	NA	NA	64487	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.005000	0.388060	
mm_86709.1	chr10	18845004	18845204	+	1	NA	NA	NA	33	NM_022032	64058	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	0.135000	0.736318	
mm_93975.1	chr10	127336032	127336232	-	1	NA	NA	NA	5447	NM_010296	14632	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	0.025000	0.587065	
mm_102007.1	chr11	51604372	51604572	-	1	NA	NA	NA	2409	NM_001048061	15384	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.005000	0.383085	
mm_45060.1	chr5	41832476	41832676	-	1	NA	NA	NA	11739	NM_001310601	665775	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0.010000	0.452736	
mm_66233.1	chr7	35215231	35215431	-	1	NA	NA	NA	14	NM_001024707	435965	Mm.333783	NM_001024707	ENSMUSG00000001802	Lrp3	-	low density lipoprotein receptor-related protein 3	protein-coding	0.180000	0.820896	
mm_50069.1	chr6	41227443	41227643	+	1	NA	NA	NA	-74729	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.015000	0.452736	
mm_89042.1	chr10	82859108	82859308	+	1	NA	NA	NA	2	NM_015762	50493	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	0.085000	0.597015	
mm_133888.1	chr16	97356627	97356827	+	1	NA	NA	NA	-1	NM_019517	56175	Mm.97885	NM_019517	ENSMUSG00000040605	Bace2	1110059C24Rik|AEPLC|AI850424|ALP56|ARP1|ASP1|ASP21|BAE2|CDA13|CEAP1|DRAP	beta-site APP-cleaving enzyme 2	protein-coding	0.105000	0.721393	
mm_138706.1	chr17	36042870	36043070	+	1	NA	NA	NA	9	NM_001034909	547347	Mm.484641	NM_001034909	ENSMUSG00000073407	Gm6034	EG547347|H2-gs14-2	predicted gene 6034	protein-coding	0.020000	0.492537	
mm_70983.1	chr8	27260251	27260451	+	1	NA	NA	NA	24	NM_007918	13685	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0.090000	0.751244	
mm_141802.1	chr17	34497283	34497483	-	1	NA	NA	NA	46	NR_004051	81497	Mm.484231	NR_004051		Btnl5-ps	Btnl5|ENSMUSG00000073420|Gm15330|NG12|OTTMUSG00000020237	butyrophilin-like 5, pseudogene	pseudo	0.010000	0.517413	
mm_46462.1	chr5	105119895	105120095	-	1	NA	NA	NA	-9703	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.010000	0.487562	
mm_165000.1	chr19	20967719	20967919	+	1	NA	NA	NA	-13617	NM_028953	13409	Mm.219585	NM_028953	ENSMUSG00000024749	Tmc1	4933416G09Rik|Beethoven|Bth|CWEA1|dn	transmembrane channel-like gene family 1	protein-coding	0.000000	0.452736	
mm_47381.1	chr5	122990188	122990388	-	1	NA	NA	NA	934	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.015000	0.492537	
mm_120870.1	chr14	75230220	75230420	+	1	NA	NA	NA	-11967	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.010000	0.442786	
mm_155598.1	chrX	82513111	82513311	+	1	NA	NA	NA	-435659	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.000000	0.328358	
mm_97755.1	chr11	80509223	80509423	+	1	NA	NA	NA	-217	NR_126552	77417	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	0.015000	0.532338	
mm_18275.1	chr2	52372465	52372665	-	1	NA	NA	NA	-33767	NM_010889	17996	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	0.015000	0.442786	
mm_54162.1	chr6	23097993	23098193	-	1	NA	NA	NA	34893	NM_013930	30956	Mm.18651	NM_013930	ENSMUSG00000029695	Aass	LKR|LKR/SDH|LOR|LOR/SDH|Lorsdh|SDH	aminoadipate-semialdehyde synthase	protein-coding	0.000000	0.462687	
mm_136285.1	chr16	91362683	91362883	-	1	NA	NA	NA	-10000	NM_010509	15976	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.025000	0.567164	
mm_130015.1	chr15	88600110	88600310	-	1	NA	NA	NA	-92	NM_027306	70073	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.020000	0.562189	
mm_144817.1	chr18	36289333	36289533	+	1	NA	NA	NA	8271	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.005000	0.368159	
mm_108730.1	chr12	87420366	87420566	+	1	NA	NA	NA	17291	NR_037228	100526546		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	0.030000	0.427861	
mm_50197.1	chr6	41951527	41951727	+	1	NA	NA	NA	-1	NM_027832	71578	Mm.96996	NM_027832	ENSMUSG00000029865	Sval1	9130404C18Rik|SLP-C	seminal vesicle antigen-like 1	protein-coding	0.005000	0.457711	
mm_86348.1	chr9	123632360	123632560	-	1	NA	NA	NA	105	NM_011731	22599	Mm.41963	NM_011731	ENSMUSG00000025243	Slc6a20b	AA986306|Sit1|Slc6a20|XT3|Xtrp3	solute carrier family 6 (neurotransmitter transporter), member 20B	protein-coding	0.020000	0.532338	
mm_43708.1	chr5	139364880	139365080	+	1	NA	NA	NA	4765	NR_029768	723898		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0.020000	0.577114	
mm_116351.1	chr13	38960448	38960648	-	1	NA	NA	NA	-11	NM_134060	108652	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	0.130000	0.736318	
mm_110124.1	chr12	26444076	26444276	-	1	NA	NA	NA	12276	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.010000	0.388060	
mm_66413.1	chr7	44496331	44496531	-	1	NA	NA	NA	82	NM_197991	69683	Mm.294759	NM_197991	ENSMUSG00000008140	Emc10	2310044H10Rik|5430410O10Rik|Inm02|Mirta22	ER membrane protein complex subunit 10	protein-coding	0.110000	0.681592	
mm_123910.1	chr14	73325705	73325905	-	1	NA	NA	NA	-14	NM_009029	19645	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb	retinoblastoma 1	protein-coding	0.180000	0.741294	
mm_97298.1	chr11	76493936	76494136	+	1	NA	NA	NA	459	NM_001346670	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.005000	0.557214	
mm_121877.1	chr14	21051451	21051651	-	1	NA	NA	NA	891	NM_018829	55946	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.025000	0.358209	
mm_41297.1	chr5	90464434	90464634	+	1	NA	NA	NA	3664	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.373134	
mm_72767.1	chr8	85601970	85602170	+	1	NA	NA	NA	-46799	NM_019794	56445	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0.010000	0.542289	
mm_73573.1	chr8	109778457	109778657	+	1	NA	NA	NA	-26	NM_009677	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0.090000	0.666667	
mm_37628.1	chr4	127350605	127350805	-	1	NA	NA	NA	3376	NM_008127	14621	Mm.56906	NM_008127	ENSMUSG00000046623	Gjb4	Cnx30.3|Cx30.3|Gjb-4	gap junction protein, beta 4	protein-coding	0.005000	0.507463	
mm_87950.1	chr10	63060544	63060744	+	1	NA	NA	NA	-973	NM_026701	68371	Mm.261389	NM_026701	ENSMUSG00000020072	Pbld1	0610038K03Rik|Mawbp|Pbld	phenazine biosynthesis-like protein domain containing 1	protein-coding	0.020000	0.427861	
mm_143444.1	chr17	70853544	70853744	-	1	NA	NA	NA	-112	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.060000	0.601990	-32(CCTTTTCTGGAG,+,0.00)
mm_139205.1	chr17	47695088	47695288	+	1	NA	NA	NA	-19	NM_144939	107971	Mm.392206	NM_144939	ENSMUSG00000023266	Frs3	4930417B13Rik|AI449674|Frs2beta|Snt2	fibroblast growth factor receptor substrate 3	protein-coding	0.170000	0.820896	
mm_31248.1	chr4	44953189	44953389	+	1	NA	NA	NA	-28105	NM_080289	76238	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0.025000	0.611940	
mm_168921.1	chr12	59094474	59094674	-	1	NA	NA	NA	-1226	NM_001329047	338320	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.035000	0.437811	
mm_43010.1	chr5	123749616	123749816	+	1	NA	NA	NA	-10	NM_001042421	208628	Mm.441089	NM_001042421	ENSMUSG00000029414	Kntc1	D330012D13|jgl	kinetochore associated 1	protein-coding	0.060000	0.507463	
mm_70580.1	chr8	13167182	13167382	+	1	NA	NA	NA	8121	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.005000	0.368159	
mm_153715.1	chr19	44403133	44403333	-	1	NA	NA	NA	4476	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.035000	0.557214	
mm_160272.1	chr7	118740073	118740273	+	1	NA	NA	NA	-98	NM_027815	71517	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	0.020000	0.542289	
mm_80875.1	chr9	98955363	98955563	+	1	NA	NA	NA	-144	NM_012020	26927	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	0.080000	0.696517	
mm_159720.1	chr5	34410366	34410566	+	1	NA	NA	NA	40533	NM_001243123	231128	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	0.000000	0.258706	-31(GTTTTTAGAGTA,+,0.00)
mm_132272.1	chr16	32906352	32906552	+	1	NA	NA	NA	-7648	NM_001310673	70144	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	0.005000	0.383085	-93(CAGTATAAATGG,-,0.00)
mm_70384.1	chr8	10481030	10481230	+	1	NA	NA	NA	327219	NM_001319151	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.025000	0.517413	
mm_64049.1	chr7	140835371	140835571	+	1	NA	NA	NA	-25	NM_029821	76974	Mm.272359	NM_029821	ENSMUSG00000025481	Urah	1190003J15Rik|2810420C16Rik	urate (5-hydroxyiso-) hydrolase	protein-coding	0.030000	0.582090	
mm_60116.1	chr7	35591667	35591867	+	1	NA	NA	NA	5520	NM_178263	245886	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding	0.020000	0.542289	16(GGCTCTATATGA,-,0.00)
mm_68781.1	chr7	122955587	122955787	-	1	NA	NA	NA	14772	NR_045614	73951	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.005000	0.457711	
mm_59487.1	chr7	27473701	27473901	+	1	NA	NA	NA	-39	NM_133210	170742	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	0.055000	0.661692	
mm_139862.1	chr17	70521577	70521777	+	1	NA	NA	NA	-217	NM_001347414	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.005000	0.393035	
mm_23271.1	chr3	51590611	51590811	+	1	NA	NA	NA	-29888	NM_080793	73251	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	0.015000	0.492537	
mm_31894.1	chr4	83023700	83023900	+	1	NA	NA	NA	-2698	NM_177863	329872	Mm.242337	NM_177863	ENSMUSG00000059049	Frem1	BC037594|D430009N09|D630008K06|crf11|eye<m02Jus>|eyes2|heb|qbrick	Fras1 related extracellular matrix protein 1	protein-coding	0.025000	0.467662	
mm_135431.1	chr16	45382723	45382923	-	1	NA	NA	NA	26230	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.010000	0.447761	
mm_63001.1	chr7	120842651	120842851	+	1	NA	NA	NA	-80	NM_007908	13631	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.075000	0.641791	
mm_111600.1	chr12	102253586	102253786	-	1	NA	NA	NA	-29388	NM_177620	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.030000	0.407960	
mm_73053.1	chr8	94366006	94366206	+	1	NA	NA	NA	-20394	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.015000	0.472637	
mm_168956.1	chr12	78350874	78351074	+	1	NA	NA	NA	124319	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.045000	0.537313	
mm_89980.1	chr10	111595865	111596065	+	1	NA	NA	NA	-1692	NR_045344	71321	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.020000	0.552239	
mm_18677.1	chr2	71333997	71334197	-	1	NA	NA	NA	33457	NM_172436	78830	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.010000	0.497512	
mm_152084.1	chr19	6906765	6906965	-	1	NA	NA	NA	2780	NM_012021	54683	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.025000	0.592040	
mm_78843.1	chr9	44327432	44327632	+	1	NA	NA	NA	687	NM_007875	13478	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	0.020000	0.542289	
mm_170503.1	chr19	24290295	24290495	-	1	NA	NA	NA	-9809	NM_008044	14297	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	0.005000	0.388060	
mm_126501.1	chr15	81772206	81772406	+	1	NA	NA	NA	27458	NM_001081016	20286	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	0.010000	0.452736	
mm_150811.1	chr19	44388740	44388940	+	1	NA	NA	NA	18869	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.050000	0.631841	
mm_1403.1	chr1	67144896	67145096	+	1	NA	NA	NA	21969	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.000000	0.388060	
mm_17013.1	chr2	18897869	18898069	-	1	NA	NA	NA	-96151	NR_131254	66774	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.015000	0.432836	-34(GGGTTTAAAAGG,-,0.00)
mm_168434.1	chr1	135232878	135233078	+	1	NA	NA	NA	25494	NM_001163131	13710	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0.020000	0.412935	
mm_70247.1	chr8	3392936	3393136	+	1	NA	NA	NA	28	NM_133962	102098	Mm.170461	NM_133962	ENSMUSG00000004568	Arhgef18	AI467246|D030053O22Rik	rho/rac guanine nucleotide exchange factor (GEF) 18	protein-coding	0.100000	0.721393	
mm_119697.1	chr14	53644084	53644284	+	1	NA	NA	NA	609745	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.492537	-32(CTTTAAATACCC,+,0.00)
mm_153249.1	chr19	36349203	36349403	-	1	NA	NA	NA	-29764	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.115000	0.651741	
mm_164357.1	chr16	21697272	21697472	+	1	NA	NA	NA	-2707	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.010000	0.348259	
mm_106844.1	chr12	8007476	8007676	+	1	NA	NA	NA	29899	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.432836	
mm_105739.1	chr11	109362346	109362546	-	1	NA	NA	NA	-348	NM_010303	14674	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0.065000	0.597015	
mm_53038.1	chr6	124570256	124570456	+	1	NA	NA	NA	-74	NM_001113356	667277	Mm.481484	NM_001113356	ENSMUSG00000098470	C1rb	Gm8551|mC1rB	complement component 1, r subcomponent B	protein-coding	0.000000	0.482587	
mm_119447.1	chr14	46882866	46883066	+	1	NA	NA	NA	1	NM_001037221	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.115000	0.696517	
mm_150512.1	chr19	39030140	39030340	+	1	NA	NA	NA	23221	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.005000	0.293532	
mm_111610.1	chr12	102400129	102400329	-	1	NA	NA	NA	39584	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.025000	0.522388	
mm_118857.1	chr14	25841778	25841978	+	1	NA	NA	NA	-277	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.020000	0.422886	
mm_100514.1	chr11	120530472	120530672	+	1	NA	NA	NA	-155	NM_008101	14527	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.075000	0.691542	
mm_151246.1	chr19	53903294	53903494	+	1	NA	NA	NA	43	NM_001168491	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.135000	0.706468	
mm_95847.1	chr11	57649470	57649670	+	1	NA	NA	NA	4128	NM_134189	171212	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	0.010000	0.497512	
mm_100428.1	chr11	119454505	119454705	+	1	NA	NA	NA	-36742	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.000000	0.482587	
mm_40859.1	chr5	73557962	73558162	+	1	NA	NA	NA	67036	NM_178896	100737	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.005000	0.323383	
mm_51957.1	chr6	91756509	91756709	+	1	NA	NA	NA	50784	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.005000	0.472637	
mm_64617.1	chr7	3616011	3616211	-	1	NA	NA	NA	46	NM_175632	232790	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	0.015000	0.547264	
mm_73995.1	chr8	120736258	120736458	+	1	NA	NA	NA	0	NM_008320	15900	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.150000	0.751244	-34(ATCTATAAAAGC,-,0.00)
mm_149703.1	chr19	21396547	21396747	+	1	NA	NA	NA	76014	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.030000	0.422886	
mm_144730.1	chr18	35553341	35553541	+	1	NA	NA	NA	31	NR_038073	100503380	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	0.090000	0.696517	
mm_107339.1	chr12	32379055	32379255	+	1	NA	NA	NA	366	NM_001162903	72123	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.080000	0.651741	
mm_121514.1	chr14	122009721	122009921	+	1	NA	NA	NA	-24853	NM_001037744	223262	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.015000	0.467662	
mm_44365.1	chr5	17807789	17807989	-	1	NA	NA	NA	28007	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.373134	79(ACTTTAAAAGTC,+,0.00)
mm_18626.1	chr2	68582228	68582428	-	1	NA	NA	NA	-85	NM_177651	227998	Mm.67562	NM_177651	ENSMUSG00000053896	4933409G03Rik	-	RIKEN cDNA 4933409G03 gene	protein-coding	0.010000	0.482587	
mm_113329.1	chr13	30792542	30792742	+	1	NA	NA	NA	43409	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.020000	0.522388	
mm_77310.1	chr8	117673544	117673744	-	1	NA	NA	NA	-2129	NM_028725	74032	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	0.050000	0.592040	
mm_69377.1	chr7	131312168	131312368	-	1	NA	NA	NA	10024	NM_008411	16433	Mm.142717	NM_008411	ENSMUSG00000040205	Cuzd1	Erg-1|Itmap1|Uo-44|Usg|Utczp	CUB and zona pellucida-like domains 1	protein-coding	0.010000	0.527363	
mm_15721.1	chr2	164077296	164077496	+	1	NA	NA	NA	3218	NM_021420	58231	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.020000	0.407960	
mm_112737.1	chr13	19257005	19257205	+	1	NA	NA	NA	138708	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.383085	
mm_87075.1	chr10	29211543	29211743	+	1	NA	NA	NA	0	NM_001162537	212448	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	0.015000	0.482587	
mm_106433.1	chr11	119392682	119392882	-	1	NA	NA	NA	2310	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.005000	0.552239	
mm_27896.1	chr3	79450451	79450651	-	1	NA	NA	NA	105175	NM_001142953	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.015000	0.422886	
mm_93391.1	chr10	107483694	107483894	-	1	NA	NA	NA	2340	NM_008656	17877	Mm.4984	NM_008656	ENSMUSG00000000435	Myf5	B130010J22Rik|Myf-5|bHLHc2	myogenic factor 5	protein-coding	0.005000	0.268657	
mm_61384.1	chr7	72442704	72442904	+	1	NA	NA	NA	-136209	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.010000	0.462687	
mm_78546.1	chr9	35354625	35354825	+	1	NA	NA	NA	73620	NR_040715	71133	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.010000	0.517413	-80(GCTTTTAAGTAG,+,0.00)
mm_154300.1	chr19	61224806	61225006	-	1	NA	NA	NA	3512	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.045000	0.547264	
mm_89821.1	chr10	105238402	105238602	+	1	NA	NA	NA	335977	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.075000	0.552239	32(CCCCAGAAAAGG,-,0.00)
mm_124374.1	chr14	106101085	106101285	-	1	NA	NA	NA	-5013	NM_198601	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0.025000	0.422886	
mm_61367.1	chr7	69909622	69909822	+	1	NA	NA	NA	413628	NR_045940	73796	Mm.410832	NR_045940	ENSMUSG00000108885	4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA	0.005000	0.547264	
mm_102201.1	chr11	54727409	54727609	-	1	NA	NA	NA	60194	NM_178626	72729	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.015000	0.497512	
mm_168393.1	chr1	127282970	127283170	-	1	NA	NA	NA	78084	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.055000	0.587065	
mm_111706.1	chr12	103694595	103694795	-	1	NA	NA	NA	-6	NM_001164742	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding	0.010000	0.492537	
mm_122521.1	chr14	47276758	47276958	-	1	NA	NA	NA	-1	NM_172598	218973	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	0.140000	0.746269	
mm_116188.1	chr13	31240996	31241196	-	1	NA	NA	NA	-10	NR_045957	73924	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	0.010000	0.388060	
mm_158651.1	chrX	155623392	155623592	-	1	NA	NA	NA	-165	NM_001093750	211612	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	0.130000	0.786070	
mm_108392.1	chr12	80948548	80948748	+	1	NA	NA	NA	3149	NM_001347415	20384	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0.020000	0.363184	
mm_23038.1	chr3	34758277	34758477	+	1	NA	NA	NA	-13698	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA	0.005000	0.432836	
mm_103584.1	chr11	78183094	78183294	-	1	NA	NA	NA	-81	NR_037683	100529077		NR_037683		Snord42b	MBII-287|U42B	small nucleolar RNA, C/D box 42B	snoRNA	0.040000	0.472637	
mm_5350.1	chr1	25228669	25228869	-	1	NA	NA	NA	49185	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding	0.075000	0.587065	
mm_168306.1	chr11	107131473	107131673	-	1	NA	NA	NA	349	NM_176850	207165	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0.140000	0.771144	
mm_115474.1	chr13	119488352	119488552	+	1	NA	NA	NA	-68	NR_027974	67304	Mm.474382	NM_026084	ENSMUSG00000074635	3110070M22Rik	-	RIKEN cDNA 3110070M22 gene	ncRNA	0.200000	0.825871	
mm_55734.1	chr6	77377366	77377566	-	1	NA	NA	NA	5009	NR_045141	70753	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	0.005000	0.427861	
mm_81202.1	chr9	107567822	107568022	+	1	NA	NA	NA	-1241	NM_010489	15587	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	0.025000	0.577114	
mm_26216.1	chr3	138783246	138783446	+	1	NA	NA	NA	41138	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.020000	0.442786	33(CCCCTTAAAAAA,-,0.00)
mm_132616.1	chr16	38712860	38713060	+	1	NA	NA	NA	75	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.100000	0.681592	
mm_81043.1	chr9	105395483	105395683	+	1	NA	NA	NA	191	NM_025651	66595	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1 (Drosophila)	protein-coding	0.095000	0.651741	
mm_18635.1	chr2	69382895	69383095	-	1	NA	NA	NA	2533	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.025000	0.467662	
mm_149148.1	chr19	9006365	9006565	+	1	NA	NA	NA	-11439	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.000000	0.412935	
mm_147205.1	chr18	37896048	37896248	-	1	NA	NA	NA	39328	NM_001305980	13367	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0.025000	0.427861	58(CCTTTTATGACT,+,0.00)
mm_152403.1	chr19	10577287	10577487	-	1	NA	NA	NA	-1	NR_126092	72982	Mm.391194	NM_028411	ENSMUSG00000024666	Tmem138	1700113I01Rik|2900055D14Rik	transmembrane protein 138	protein-coding	0.065000	0.587065	-44(ATTTTTATAGGC,+,0.00)
mm_100139.1	chr11	115975012	115975212	+	1	NA	NA	NA	387	NM_133663	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.125000	0.736318	
mm_79243.1	chr9	50528658	50528858	+	1	NA	NA	NA	-117	NM_011220	19286	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	0.085000	0.656716	
mm_39729.1	chr5	28368162	28368362	+	1	NA	NA	NA	51073	NM_028234	381626	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	0.010000	0.512438	
mm_154551.1	chrM	14945	15145	-	1	NA	NA	NA	NA	NA									0.025000	0.383085	
mm_28844.1	chr3	96666928	96667128	-	1	NA	NA	NA	-3103	NM_001081139	213121	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	0.015000	0.447761	
mm_158.1	chr1	12692448	12692648	+	1	NA	NA	NA	118	NM_001198566	240725	Mm.45563	NM_172294	ENSMUSG00000016918	Sulf1	AI467640|AW121680|mKIAA1077	sulfatase 1	protein-coding	0.010000	0.507463	
mm_156147.1	chrX	129865056	129865256	+	1	NA	NA	NA	115414	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.005000	0.363184	
mm_3299.1	chr1	136696166	136696366	+	1	NA	NA	NA	55	NR_037986	100503474	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0.055000	0.542289	56(GCCCCGAAAAGG,-,0.00)
mm_97637.1	chr11	78973686	78973886	+	1	NA	NA	NA	11138	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.020000	0.492537	
mm_113863.1	chr13	48261065	48261265	+	1	NA	NA	NA	-262	NM_031166	15904	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding	0.075000	0.582090	
mm_20598.1	chr2	131337539	131337739	-	1	NA	NA	NA	15253	NM_178607	51902	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	0.015000	0.393035	
mm_75070.1	chr8	33834341	33834541	-	1	NA	NA	NA	-86671	NM_001206849	72632	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	0.035000	0.442786	
mm_46680.1	chr5	109557702	109557902	-	1	NA	NA	NA	1191	NM_016715	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.035000	0.512438	
mm_150068.1	chr19	29386402	29386602	+	1	NA	NA	NA	19064	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.010000	0.363184	
mm_20052.1	chr2	120252181	120252381	-	1	NA	NA	NA	-6946	NM_177845	329502	Mm.330505	NM_177845	ENSMUSG00000050211	Pla2g4e	2310026J01Rik|C230096D22|Pla2epsilon	phospholipase A2, group IVE	protein-coding	0.010000	0.512438	
mm_8958.1	chr1	164884885	164885085	-	1	NA	NA	NA	21864	NR_040303	433374	Mm.251149	NR_040303	ENSMUSG00000104117	Gm20743	-	predicted gene, 20743	ncRNA	0.010000	0.512438	
mm_155353.1	chrX	68761796	68761996	+	1	NA	NA	NA	57	NM_001166619	207854	Mm.284945	NM_174993	ENSMUSG00000062170	Fmr1nb	3830422N12Rik|NY-SAR-35|NYSAR35	fragile X mental retardation 1 neighbor	protein-coding	0.050000	0.522388	
mm_18927.1	chr2	76745533	76745733	-	1	NA	NA	NA	70318	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.025000	0.442786	
mm_33665.1	chr4	133175922	133176122	+	1	NA	NA	NA	-19633	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.005000	0.472637	
mm_112082.1	chr12	112671936	112672136	-	1	NA	NA	NA	2240	NM_001165894	11651	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.020000	0.562189	
mm_73240.1	chr8	104144159	104144359	+	1	NA	NA	NA	-26254	NM_001141924	65115	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	0.010000	0.328358	
mm_61238.1	chr7	65371328	65371528	+	1	NA	NA	NA	-184	NM_009386	21872	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.060000	0.532338	
mm_75552.1	chr8	57652931	57653131	-	1	NA	NA	NA	24	NM_001167981	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0.080000	0.716418	
mm_84006.1	chr9	57626950	57627150	-	1	NA	NA	NA	-6276	NM_199222	235416	Mm.295630	NM_199222	ENSMUSG00000056271	Lman1l	BC020188|slamp	lectin, mannose-binding 1 like	protein-coding	0.015000	0.477612	
mm_126833.1	chr15	88982828	88983028	+	1	NA	NA	NA	-66	NM_031260	83456	Mm.358791	NM_031260	ENSMUSG00000015365	Mov10l1	CHAMP|Csm	Moloney leukemia virus 10-like 1	protein-coding	0.065000	0.661692	
mm_30150.1	chr3	142572463	142572663	-	1	NA	NA	NA	12067	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.005000	0.398010	
mm_139503.1	chr17	56303307	56303507	+	1	NA	NA	NA	70	NM_001111079	18140	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	0.045000	0.582090	
mm_7560.1	chr1	124723235	124723435	-	1	NA	NA	NA	-677776	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.010000	0.368159	
mm_120992.1	chr14	79397692	79397892	+	1	NA	NA	NA	20	NM_145960	211253	Mm.35306	NM_145960	ENSMUSG00000022022	Mtrf1	A830062K05Rik|MtRF-1	mitochondrial translational release factor 1	protein-coding	0.040000	0.527363	
mm_23159.1	chr3	40531547	40531747	+	1	NA	NA	NA	-8735	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.100000	0.701493	
mm_27641.1	chr3	63854000	63854200	-	1	NA	NA	NA	-3109	NM_001177732	269437	Mm.316391	NM_183191	ENSMUSG00000036834	Plch1	BC042549|PLC-eta-1|PLCeta1|Plcl3	phospholipase C, eta 1	protein-coding	0.005000	0.417910	
mm_94475.1	chr11	6560079	6560279	+	1	NA	NA	NA	-4	NM_001190344	216527	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0.005000	0.432836	
mm_61645.1	chr7	80387907	80388107	+	1	NA	NA	NA	-61	NM_010194	14159	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.050000	0.641791	
mm_53321.1	chr6	129187432	129187632	+	1	NA	NA	NA	6917	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.000000	0.407960	
mm_102273.1	chr11	55395284	55395484	-	1	NA	NA	NA	24696	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.010000	0.437811	
mm_59839.1	chr7	29519051	29519251	+	1	NA	NA	NA	-13691	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.090000	0.666667	
mm_159162.1	chr2	90782638	90782838	+	1	NA	NA	NA	-6	NM_178755	271813	Mm.61146	NM_178755	ENSMUSG00000040812	Agbl2	4930524K04|A430081C19Rik|CCP2	ATP/GTP binding protein-like 2	protein-coding	0.040000	0.641791	
mm_164077.1	chr14	122375314	122375514	+	1	NA	NA	NA	75701	NR_033325	328479	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.030000	0.427861	-98(TCCTTTTTAAGG,-,0.00),-96(CTTTTTAAGGTC,+,0.00)
mm_130915.1	chr15	102624981	102625181	-	1	NA	NA	NA	383	NM_001310070	223922	Mm.208714	NM_146065	ENSMUSG00000052414	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	0.050000	0.616915	
mm_156617.1	chrX	153500247	153500447	+	1	NA	NA	NA	2115	NM_018798	54609	Mm.430772	NM_018798	ENSMUSG00000050148	Ubqln2	Chap1|Dsk2|HRIHFB2157|Plic-2|Plic2	ubiquilin 2	protein-coding	0.035000	0.437811	
mm_109257.1	chr12	109459856	109460056	+	1	NA	NA	NA	6501	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.070000	0.681592	
mm_3943.1	chr1	163779738	163779938	+	1	NA	NA	NA	255	NM_010629	16579	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	0.080000	0.656716	
mm_118498.1	chr14	13453967	13454167	+	1	NA	NA	NA	109	NM_001163032	72003	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.010000	0.517413	
mm_104015.1	chr11	85311975	85312175	-	1	NA	NA	NA	821	NM_016910	53892	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	0.060000	0.572139	89(TGCTATAAAAAG,-,0.00)
mm_94571.1	chr11	11689846	11690046	+	1	NA	NA	NA	-231	NM_001301865	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.000000	0.402985	
mm_133618.1	chr16	91560451	91560651	+	1	NA	NA	NA	13457	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.005000	0.462687	
mm_90834.1	chr10	8452934	8453134	-	1	NA	NA	NA	65791	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.020000	0.442786	
mm_172819.1	chr9	12655276	12655476	+	1	NA	NA	NA	450479	NR_040755	78219	Mm.414868	NR_040755	ENSMUSG00000111830	4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA	0.005000	0.298507	
mm_61332.1	chr7	68275774	68275974	+	1	NA	NA	NA	720	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.020000	0.567164	
mm_23971.1	chr3	85581041	85581241	+	1	NA	NA	NA	7012	NM_144896	229487	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0.000000	0.303483	-75(ATGCTTAAAAGC,-,0.00)
mm_128369.1	chr15	42585441	42585641	-	1	NA	NA	NA	91436	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.010000	0.333333	
mm_19831.1	chr2	112203269	112203469	-	1	NA	NA	NA	-36472	NM_207206	99010	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.010000	0.432836	
mm_131295.1	chr16	11399504	11399704	+	1	NA	NA	NA	-6044	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.005000	0.477612	
mm_169354.1	chr14	24487118	24487318	+	1	NA	NA	NA	-172	NM_001081247	218832	Mm.343610	NM_183157	ENSMUSG00000025280	Polr3a	9330175N20Rik|BC053071|RPC1|RPC155	polymerase (RNA) III (DNA directed) polypeptide A	protein-coding	0.065000	0.582090	
mm_29294.1	chr3	107829492	107829692	-	1	NA	NA	NA	-47638	NM_133867	99662	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0.010000	0.582090	
mm_106008.1	chr11	115813478	115813678	-	1	NA	NA	NA	14	NM_080643	140721	Mm.383737	NM_080643	ENSMUSG00000034471	Caskin2	1600028L06Rik|mKIAA1139	CASK-interacting protein 2	protein-coding	0.080000	0.721393	
mm_53493.1	chr6	135203342	135203542	+	1	NA	NA	NA	5455	NM_028982	74525	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|Kiaa1467|mKIAA1467	family with sequence similarity 234, member B	protein-coding	0.005000	0.328358	
mm_54892.1	chr6	46147797	46147997	-	1	NA	NA	NA	1087836	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.000000	0.378109	
mm_169546.1	chr15	102510570	102510770	-	1	NA	NA	NA	6334	NM_001163643	26404	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0.080000	0.716418	
mm_142585.1	chr17	46726250	46726450	-	1	NA	NA	NA	2815	NM_010321	14711	Mm.29395	NM_010321	ENSMUSG00000002769	Gnmt	-	glycine N-methyltransferase	protein-coding	0.050000	0.611940	
mm_26634.1	chr3	152929946	152930146	+	1	NA	NA	NA	52161	NM_012028	26938	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.020000	0.537313	
mm_120047.1	chr14	56620816	56621016	+	1	NA	NA	NA	45297	NM_001145978	328417	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	0.005000	0.363184	
mm_115604.1	chr13	11969826	11970026	-	1	NA	NA	NA	137019	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.010000	0.388060	67(TCCTTTTAAAAC,-,0.00),68(CCTTTTAAAACA,+,0.00)
mm_98444.1	chr11	94942707	94942907	+	1	NA	NA	NA	6583	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.030000	0.606965	
mm_61364.1	chr7	69496015	69496215	+	1	NA	NA	NA	21	NR_045940	73796	Mm.410832	NR_045940	ENSMUSG00000108885	4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA	0.035000	0.517413	
mm_166256.1	chr5	87670790	87670990	+	1	NA	NA	NA	4682	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.020000	0.298507	
mm_112110.1	chr12	112795688	112795888	-	1	NA	NA	NA	-13187	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.065000	0.621891	
mm_172148.1	chr6	3820606	3820806	-	1	NA	NA	NA	-55993	NM_007588	12311	Mm.4642	NM_007588	ENSMUSG00000023964	Calcr	Clr	calcitonin receptor	protein-coding	0.040000	0.582090	
mm_82959.1	chr9	35570376	35570576	-	1	NA	NA	NA	-407	NM_029762	76832	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	hydrolethalus syndrome 1	protein-coding	0.100000	0.666667	
mm_140816.1	chr17	22867074	22867274	-	1	NA	NA	NA	-40	NM_001110254	240041	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	0.040000	0.497512	-55(GGGTTTAAAGGA,-,0.00)
mm_166008.1	chr4	117445755	117445955	+	1	NA	NA	NA	51197	NM_025739	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.025000	0.552239	
mm_141237.1	chr17	27436903	27437103	-	1	NA	NA	NA	66530	NM_001013385	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.015000	0.537313	
mm_152119.1	chr19	6987389	6987589	-	1	NA	NA	NA	162	NM_001185164	22340	Mm.15607	NM_011697	ENSMUSG00000024962	Vegfb	VEGF-B|Vrf	vascular endothelial growth factor B	protein-coding	0.145000	0.840796	
mm_67399.1	chr7	79884513	79884713	-	1	NA	NA	NA	36027	NM_009682	11778	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	0.000000	0.427861	
mm_20759.1	chr2	140671369	140671569	-	1	NA	NA	NA	7	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.045000	0.572139	
mm_6898.1	chr1	84745081	84745281	-	1	NA	NA	NA	-48960	NM_152915	227325	Mm.292560	NM_152915	ENSMUSG00000036766	Dner	A930026D19Rik|BET|Bret	delta/notch-like EGF repeat containing	protein-coding	0.005000	0.303483	
mm_114845.1	chr13	92693158	92693358	+	1	NA	NA	NA	82120	NM_172588	218442	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.010000	0.497512	
mm_9104.1	chr1	170110333	170110533	-	1	NA	NA	NA	-21489	NM_022563	18214	Mm.229249	NM_022563	ENSMUSG00000026674	Ddr2	AW495251|Ntrkr3|tyro10	discoidin domain receptor family, member 2	protein-coding	0.035000	0.527363	
mm_66179.1	chr7	34022685	34022885	-	1	NA	NA	NA	1218	NM_009596	11354	Mm.8025	NM_009596	ENSMUSG00000066583	Scgb1b27	Abp|Abpa|Abpa27|Sal-1|Tcp	secretoglobin, family 1B, member 27	protein-coding	0.010000	0.477612	
mm_134085.1	chr16	8738868	8739068	-	1	NA	NA	NA	-626	NM_001003918	252870	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.175000	0.781095	
mm_81795.1	chr9	115200317	115200517	+	1	NA	NA	NA	81653	NR_029430	111186	Mm.484753	NR_029430		Stmn1-rs1	Lag-rs1|Lap18-rs1	stathmin 1, related sequence 1	pseudo	0.030000	0.587065	
mm_64628.1	chr7	3692695	3692895	-	1	NA	NA	NA	730	NM_029934	77582	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	0.120000	0.721393	9(GCCTCGAAAAGG,-,0.00)
mm_92774.1	chr10	81167801	81168001	-	1	NA	NA	NA	-181	NM_021501	59004	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0.085000	0.621891	
mm_88598.1	chr10	79793228	79793428	+	1	NA	NA	NA	-244	NM_023128	18483	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0.025000	0.577114	
mm_35310.1	chr4	25281676	25281876	-	1	NA	NA	NA	45	NM_026194	67490	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	0.105000	0.666667	
mm_125085.1	chr15	27025197	27025397	+	1	NA	NA	NA	-129733	NM_176959	448987	Mm.253378	NM_176959	ENSMUSG00000043556	Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding	0.045000	0.447761	
mm_85089.1	chr9	91961035	91961235	-	1	NA	NA	NA	-231801	NM_001195693	100504689	Mm.464262	NM_001195693	ENSMUSG00000095654	Plscr5	331000	phospholipid scramblase family, member 5	protein-coding	0.025000	0.532338	
mm_12074.1	chr2	59775942	59776142	+	1	NA	NA	NA	106564	NM_001159636	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.030000	0.537313	
mm_113004.1	chr13	21833644	21833844	+	1	NA	NA	NA	1	NM_001097979	665596	Mm.371766	NM_001097979	ENSMUSG00000069307	Hist1h2bq	Gm13646|OTTMUSG00000013203	histone cluster 1, H2bq	protein-coding	0.050000	0.537313	
mm_136486.1	chr16	96082443	96082643	-	1	NA	NA	NA	-115	NM_145125	93871	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0.160000	0.786070	
mm_19340.1	chr2	90636769	90636969	-	1	NA	NA	NA	-40346	NM_021512	59015	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.035000	0.532338	
mm_18086.1	chr2	44927123	44927323	-	1	NA	NA	NA	-65601	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.115000	0.786070	
mm_63572.1	chr7	128117654	128117854	+	1	NA	NA	NA	-11814	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.000000	0.477612	
mm_33672.1	chr4	133192098	133192298	+	1	NA	NA	NA	-3457	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.025000	0.537313	
mm_68258.1	chr7	105591698	105591898	-	1	NA	NA	NA	8318	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.000000	0.487562	
mm_110802.1	chr12	72212272	72212472	-	1	NA	NA	NA	23374	NR_104446	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.020000	0.412935	
mm_73291.1	chr8	104947256	104947456	+	1	NA	NA	NA	0	NM_001079865	71903	Mm.442371	NM_001079865	ENSMUSG00000062826	Ces2f	2310038E17Rik|A430088E12	carboxylesterase 2F	protein-coding	0.015000	0.542289	
mm_152495.1	chr19	11080972	11081172	-	1	NA	NA	NA	31	NM_022430	64381	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	0.020000	0.517413	
mm_82836.1	chr9	31150671	31150871	-	1	NA	NA	NA	-18972	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.010000	0.472637	69(TCTTTTAAATGG,+,0.00)
mm_141689.1	chr17	33951697	33951897	-	1	NA	NA	NA	-309	NM_019420	54218	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	0.025000	0.557214	
mm_8163.1	chr1	136949495	136949695	-	1	NA	NA	NA	4035	NM_001159769	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	0.035000	0.582090	-83(GCATTTATATCC,+,0.00)
mm_46471.1	chr5	105126615	105126815	-	1	NA	NA	NA	12837	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.338308	-83(CCATTTATGTCC,+,0.00),30(TTTTTTATAGAC,+,0.00)
mm_156946.1	chrX	169980639	169980839	+	1	NA	NA	NA	-1822	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.000000	0.452736	
mm_136755.1	chr17	8582544	8582744	+	1	NA	NA	NA	55843	NM_001290707	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.000000	0.383085	
mm_72020.1	chr8	70724016	70724216	+	1	NA	NA	NA	52	NM_201607	110385	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	0.020000	0.626866	
mm_172309.1	chr7	104543223	104543423	-	1	NA	NA	NA	-7962	NR_033673	625321	Mm.367236	NM_001037924	ENSMUSG00000073929	Trim30e-ps1	EG625321|Gm6577|Trim30-4	tripartite motif-containing 30E, pseudogene 1	pseudo	0.015000	0.388060	
mm_6470.1	chr1	74048735	74048935	-	1	NA	NA	NA	75612	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.015000	0.492537	
mm_127464.1	chr15	101272629	101272829	+	1	NA	NA	NA	5883	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.040000	0.542289	
mm_74395.1	chr8	3200345	3200545	-	1	NA	NA	NA	79172	NM_010568	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.000000	0.348259	
mm_113923.1	chr13	49582621	49582821	+	1	NA	NA	NA	-26	NM_012050	27047	Mm.390589	NM_012050	ENSMUSG00000048368	Omd	OSAD|SLRR2C	osteomodulin	protein-coding	0.005000	0.368159	
mm_55150.1	chr6	51466872	51467072	-	1	NA	NA	NA	2922	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.020000	0.462687	
mm_21129.1	chr2	154202611	154202811	-	1	NA	NA	NA	2331	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.025000	0.562189	
mm_46709.1	chr5	110342885	110343085	-	1	NA	NA	NA	50	NM_153400	231602	Mm.55948	NM_153400	ENSMUSG00000029503	P2rx2	P2X2a|P2x2	purinergic receptor P2X, ligand-gated ion channel, 2	protein-coding	0.070000	0.686567	
mm_121991.1	chr14	26442776	26442976	-	1	NA	NA	NA	85329	NR_038005	71106	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.010000	0.407960	
mm_37758.1	chr4	129672603	129672803	-	1	NA	NA	NA	64	NM_008468	16650	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	0.115000	0.671642	
mm_24866.1	chr3	95934719	95934919	+	1	NA	NA	NA	5562	NM_023210	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.005000	0.422886	
mm_153034.1	chr19	31910328	31910528	-	1	NA	NA	NA	41667	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.005000	0.457711	
mm_7549.1	chr1	124536508	124536708	-	1	NA	NA	NA	-491049	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.288557	
mm_80883.1	chr9	99183531	99183731	+	1	NA	NA	NA	-43420	NM_029094	74769	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol 3-kinase, catalytic, beta polypeptide	protein-coding	0.020000	0.472637	
mm_86340.1	chr9	123260665	123260865	-	1	NA	NA	NA	24	NM_001002267	72309	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	0.120000	0.736318	
mm_43700.1	chr5	139252222	139252422	+	1	NA	NA	NA	-2	NM_026269	67604	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.150000	0.751244	
mm_34313.1	chr4	141817878	141818078	+	1	NA	NA	NA	8027	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.030000	0.582090	
mm_93383.1	chr10	105574344	105574544	-	1	NA	NA	NA	35	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.065000	0.661692	
mm_96446.1	chr11	67479668	67479868	+	1	NA	NA	NA	-53230	NM_008088	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.010000	0.552239	
mm_148594.1	chr19	5069730	5069930	+	1	NA	NA	NA	1752	NM_054042	70445	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.000000	0.562189	
mm_64760.1	chr7	4866041	4866241	-	1	NA	NA	NA	38	NM_026158	67441	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	0.085000	0.587065	
mm_62334.1	chr7	100493966	100494166	+	1	NA	NA	NA	708	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.010000	0.537313	
mm_16129.1	chr2	170285237	170285437	+	1	NA	NA	NA	-71024	NR_040610	73303	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.030000	0.537313	
mm_14684.1	chr2	140055958	140056158	+	1	NA	NA	NA	10747	NM_001159640	75812	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0.000000	0.462687	
mm_86303.1	chr9	122351321	122351521	-	1	NA	NA	NA	-195	NM_026179	67469	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0.045000	0.592040	-82(GACCATTAATGC,-,0.00)
mm_169208.1	chr13	66472938	66473138	-	1	NA	NA	NA	-31920	NM_001290196	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.015000	0.527363	-38(GTGCATATAAGC,-,0.00)
mm_13689.1	chr2	117120771	117120971	+	1	NA	NA	NA	-200	NM_001277256	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.100000	0.676617	
mm_25901.1	chr3	131111286	131111486	+	1	NA	NA	NA	1089	NM_001276402	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.070000	0.651741	
mm_154021.1	chr19	53389573	53389773	-	1	NA	NA	NA	900	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	0.015000	0.328358	
mm_114337.1	chr13	60738057	60738257	+	1	NA	NA	NA	48207	NM_199148	218275	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.020000	0.552239	
mm_50215.1	chr6	42286582	42286782	+	1	NA	NA	NA	-3	NM_013491	12723	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	0.015000	0.611940	-50(AGCTATAAATAG,-,0.00)
mm_36718.1	chr4	98699043	98699243	-	1	NA	NA	NA	-27611	NM_001081202	381591	Mm.34340	NM_001081202	ENSMUSG00000087166	L1td1	AA546746|AB211064|D76865|ECAT11	LINE-1 type transposase domain containing 1	protein-coding	0.010000	0.532338	
mm_65461.1	chr7	25471725	25471925	-	1	NA	NA	NA	5800	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.025000	0.462687	-67(CCCTATTAAGAG,-,0.00)
mm_36839.1	chr4	106617136	106617336	-	1	NA	NA	NA	2	NM_183182	242602	Mm.235591	NM_183182	ENSMUSG00000054362	Lexm	-	lymphocyte expansion molecule	protein-coding	0.075000	0.646766	
mm_50222.1	chr6	42349987	42350187	+	1	NA	NA	NA	259	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.150000	0.756219	
mm_36654.1	chr4	94650010	94650210	-	1	NA	NA	NA	34	NM_175305	100061	Mm.26760	NM_175305	ENSMUSG00000049799	Lrrc19	9130022A01Rik|AI314124|AL022954|AW261791	leucine rich repeat containing 19	protein-coding	0.010000	0.407960	
mm_26190.1	chr3	138443031	138443231	+	1	NA	NA	NA	38	NM_007410	11532	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	0.115000	0.701493	
mm_34787.1	chr4	154191039	154191239	+	1	NA	NA	NA	20426	NM_001162977	230971	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	0.005000	0.492537	
mm_73543.1	chr8	108714978	108715178	+	1	NA	NA	NA	434	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.130000	0.815920	
mm_53411.1	chr6	132572051	132572251	+	1	NA	NA	NA	2309	NM_011174	19131	Mm.425348	NM_011174	ENSMUSG00000059934	Prh1	MP2|Prp	proline rich protein HaeIII subfamily 1	protein-coding	0.010000	0.691542	
mm_98479.1	chr11	94950694	94950894	+	1	NA	NA	NA	14570	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.030000	0.542289	
mm_55782.1	chr6	81965844	81966044	-	1	NA	NA	NA	5	NM_026490	56284	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	0.060000	0.611940	
mm_35812.1	chr4	46748928	46749128	-	1	NA	NA	NA	-98829	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	0.005000	0.412935	
mm_129965.1	chr15	85581775	85581975	-	1	NA	NA	NA	-54	NM_009528	22422	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	0.150000	0.766169	
mm_37357.1	chr4	120570125	120570325	-	1	NA	NA	NA	51	NM_016748	51797	Mm.1815	NM_016748	ENSMUSG00000028633	Ctps	Ctps1	cytidine 5'-triphosphate synthase	protein-coding	0.105000	0.731343	
mm_145870.1	chr18	65465857	65466057	+	1	NA	NA	NA	34960	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.388060	
mm_148057.1	chr18	72148186	72148386	-	1	NA	NA	NA	202783	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.005000	0.318408	
mm_85515.1	chr9	106399604	106399804	-	1	NA	NA	NA	-29707	NM_001324533	19944	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	0.015000	0.532338	
mm_69756.1	chr7	140999188	140999388	-	1	NA	NA	NA	11456	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.020000	0.452736	
mm_155683.1	chrX	93675260	93675460	+	1	NA	NA	NA	248	NM_211138	236899	Mm.166467	NM_177546	ENSMUSG00000035246	Pcyt1b	AW045697|CTTbeta	phosphate cytidylyltransferase 1, choline, beta isoform	protein-coding	0.005000	0.492537	
mm_14606.1	chr2	136501956	136502156	+	1	NA	NA	NA	-30265	NM_175667	319196	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0.010000	0.383085	25(CCCTATATGCCG,+,0.00)
mm_118313.1	chr13	113101890	113102090	-	1	NA	NA	NA	-1009	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.030000	0.527363	
mm_168824.1	chr12	22466913	22467113	-	1	NA	NA	NA	-310367	NR_136920	100043416		NM_001004167	ENSMUSG00000093846	Gm4425	EG432637|Gm5433	KRAB-domain protein pseudogene	pseudo	0.130000	0.746269	
mm_159762.1	chr5	92388133	92388333	+	1	NA	NA	NA	99	NM_001310665	109979	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0.025000	0.512438	
mm_88840.1	chr10	80871712	80871912	+	1	NA	NA	NA	-8004	NM_001081688	432478	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	0.015000	0.621891	
mm_34864.1	chr4	155557082	155557282	+	1	NA	NA	NA	-5210	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.015000	0.512438	
mm_93608.1	chr10	117234327	117234527	-	1	NA	NA	NA	4254	NM_029906	77397	Mm.118350	NM_029906	ENSMUSG00000020177	9530003J23Rik	Lyzf1	RIKEN cDNA 9530003J23 gene	protein-coding	0.025000	0.417910	
mm_123302.1	chr14	61648713	61648913	-	1	NA	NA	NA	-16703	NR_029733	387174		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0.100000	0.651741	
mm_168017.1	chrY	90737433	90737633	+	1	NA	NA	NA	17517	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.447761	
mm_111123.1	chr12	81333075	81333275	-	1	NA	NA	NA	5	NM_001167920	110893	Mm.443748	NM_080440	ENSMUSG00000079055	Slc8a3	AW742262|Ncx3	solute carrier family 8 (sodium/calcium exchanger), member 3	protein-coding	0.075000	0.621891	
mm_4250.1	chr1	171408023	171408223	+	1	NA	NA	NA	-3190	NM_001305678	22278	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	0.025000	0.517413	
mm_110566.1	chr12	55821076	55821276	-	1	NA	NA	NA	340	NM_019994	56784	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0.080000	0.587065	
mm_105503.1	chr11	106160615	106160815	-	1	NA	NA	NA	-573	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.055000	0.577114	
mm_148887.1	chr19	6871032	6871232	+	1	NA	NA	NA	-12921	NM_001081291	78317	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.005000	0.442786	
mm_116343.1	chr13	38503495	38503695	-	1	NA	NA	NA	24319	NM_001289599	105245	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	0.010000	0.527363	75(CTCTCTAAAAAG,-,0.00)
mm_7151.1	chr1	91405957	91406157	-	1	NA	NA	NA	-28	NR_026924	67086	Mm.396158	NR_026924	ENSMUSG00000100253	1700020N18Rik	-	RIKEN cDNA 1700020N18 gene	ncRNA	0.075000	0.676617	
mm_39357.1	chr5	9101169	9101369	+	1	NA	NA	NA	532	NM_001081029	652925	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.105000	0.676617	
mm_164468.1	chr16	61947220	61947420	-	1	NA	NA	NA	839396	NM_178925	106338	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	0.005000	0.288557	
mm_39334.1	chr5	8798052	8798252	+	1	NA	NA	NA	5	NM_011075	18669	Mm.146649	NM_011075	ENSMUSG00000028970	Abcb1b	Abcb1|Mdr1|Mdr1b|Pgy-1|Pgy1|mdr	ATP-binding cassette, sub-family B (MDR/TAP), member 1B	protein-coding	0.045000	0.597015	
mm_93260.1	chr10	95563978	95564178	-	1	NA	NA	NA	89	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.160000	0.751244	-100(CCGCTTAAATGC,-,0.00),-98(GCTTAAATGCGG,+,0.00)
mm_151080.1	chr19	47619684	47619884	+	1	NA	NA	NA	39765	NM_001164639	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0.010000	0.398010	
mm_34752.1	chr4	152318641	152318841	+	1	NA	NA	NA	-116	NM_001033489	433809	Mm.156205	NM_001033489	ENSMUSG00000058498	Rnf207	D330010C22Rik|Gm143	ring finger protein 207	protein-coding	0.025000	0.562189	
mm_107030.1	chr12	13303156	13303356	+	1	NA	NA	NA	34129	NM_027706	71169	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	0.010000	0.477612	
mm_97395.1	chr11	77811121	77811321	+	1	NA	NA	NA	9923	NM_001291215	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.010000	0.601990	
mm_88319.1	chr10	75564074	75564274	+	1	NA	NA	NA	-3844	NM_198860	192734	Mm.259320	NM_198860	ENSMUSG00000046807	Lrrc75b	AI646023|Fam211b	leucine rich repeat containing 75B	protein-coding	0.010000	0.522388	
mm_59171.1	chr7	24402767	24402967	+	1	NA	NA	NA	3239	NM_028047	71997	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.015000	0.512438	
mm_147062.1	chr18	34954231	34954431	-	1	NA	NA	NA	20	NM_010481	15526	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.070000	0.661692	
mm_52344.1	chr6	110776454	110776654	+	1	NA	NA	NA	130956	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.005000	0.457711	
mm_58668.1	chr7	7171260	7171460	+	1	NA	NA	NA	7	NM_146179	232854	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding	0.020000	0.477612	
mm_145652.1	chr18	61129185	61129385	+	1	NA	NA	NA	11817	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.020000	0.542289	
mm_59485.1	chr7	27465624	27465824	+	1	NA	NA	NA	-8116	NM_133210	170742	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	0.020000	0.452736	
mm_103270.1	chr11	72037385	72037585	-	1	NA	NA	NA	24	NM_053245	114230	Mm.95707	NM_053245	ENSMUSG00000040554	Aipl1	A930007I01Rik	aryl hydrocarbon receptor-interacting protein-like 1	protein-coding	0.010000	0.552239	
mm_149720.1	chr19	21778213	21778413	+	1	NA	NA	NA	-27	NM_001033759	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.100000	0.716418	
mm_73774.1	chr8	116537882	116538082	+	1	NA	NA	NA	32967	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.000000	0.467662	-100(CCTTATATAGGA,+,0.00)
mm_137408.1	chr17	26111309	26111509	+	1	NA	NA	NA	-1907	NM_021793	60455	Mm.304656	NM_021793	ENSMUSG00000024180	Tmem8	AW490096|M83|Tmem8a	transmembrane protein 8 (five membrane-spanning domains)	protein-coding	0.015000	0.447761	
mm_9065.1	chr1	167688943	167689143	-	1	NA	NA	NA	-515	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding	0.100000	0.646766	
mm_36145.1	chr4	59474730	59474930	-	1	NA	NA	NA	-36197	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.000000	0.358209	
mm_86586.1	chr10	13060611	13060811	+	1	NA	NA	NA	-30077	NM_009538	22634	Mm.287857	NM_009538	ENSMUSG00000019817	Plagl1	Lot1|Zac1	pleiomorphic adenoma gene-like 1	protein-coding	0.030000	0.497512	-8(GCTTTTAAGCTC,+,0.00)
mm_42430.1	chr5	115341220	115341420	+	1	NA	NA	NA	73	NM_026933	69076	Mm.27951	NM_026933	ENSMUSG00000029535	Triap1	1810015M01Rik|AU020874|AU043831|P53csv|Wf-1	TP53 regulated inhibitor of apoptosis 1	protein-coding	0.090000	0.606965	
mm_104880.1	chr11	99493021	99493221	-	1	NA	NA	NA	-11	NM_033373	94179	Mm.290657	NM_033373	ENSMUSG00000006777	Krt23	CK23|Haik1|K23|Krt1-23	keratin 23	protein-coding	0.015000	0.502488	
mm_40709.1	chr5	65863555	65863755	+	1	NA	NA	NA	86	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.030000	0.552239	
mm_163463.1	chr12	101145444	101145644	+	1	NA	NA	NA	-65	NR_033653	74947	Mm.488905	NR_033653	ENSMUSG00000092054	Kif4-ps	4930463M05Rik|Kif4b	kinesin family member 4, pseudogene	pseudo	0.015000	0.492537	
mm_110628.1	chr12	57197221	57197421	-	1	NA	NA	NA	151	NM_172577	217593	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0.035000	0.492537	
mm_9343.1	chr1	172057494	172057694	-	1	NA	NA	NA	2	NM_010916	18071	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	0.000000	0.482587	
mm_133253.1	chr16	77329120	77329320	+	1	NA	NA	NA	-108	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.035000	0.532338	
mm_127577.1	chr15	102296308	102296508	+	1	NA	NA	NA	115	NM_001014976	105988	Mm.288324	NM_001014976	ENSMUSG00000058290	Espl1	AL024103|AU045071|Cerp|ESP1|PRCE|SSE	extra spindle pole bodies 1, separase	protein-coding	0.100000	0.661692	
mm_75921.1	chr8	71485947	71486147	-	1	NA	NA	NA	20	NM_001164679	382014	Mm.260360	NM_001164679	ENSMUSG00000034863	Ano8	BC053460|Tmem16h	anoctamin 8	protein-coding	0.085000	0.656716	
mm_79755.1	chr9	62373517	62373717	+	1	NA	NA	NA	32274	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.040000	0.552239	
mm_166750.1	chr6	125321723	125321923	+	1	NA	NA	NA	483	NM_011324	20276	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0.030000	0.626866	
mm_82073.1	chr9	122922971	122923171	+	1	NA	NA	NA	-7	NM_009544	22646	Mm.290595	NM_009544	ENSMUSG00000057895	Zfp105	AW557864	zinc finger protein 105	protein-coding	0.115000	0.706468	
mm_72071.1	chr8	71534165	71534365	+	1	NA	NA	NA	3172	NM_198095	69550	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	0.000000	0.477612	
mm_78693.1	chr9	40806540	40806740	+	1	NA	NA	NA	5367	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.005000	0.457711	
mm_73229.1	chr8	104101581	104101781	+	1	NA	NA	NA	56	NM_009868	12562	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.010000	0.582090	
mm_162989.1	chr11	23633574	23633774	-	1	NA	NA	NA	-43	NM_027860	71675	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	0.145000	0.756219	
mm_168587.1	chr1	173535694	173535894	-	1	NA	NA	NA	163	NM_001024721	545384	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	0.000000	0.452736	
mm_130055.1	chr15	89177969	89178169	-	1	NA	NA	NA	2719	NM_001284506	140570	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.005000	0.507463	
mm_129203.1	chr15	76512089	76512289	-	1	NA	NA	NA	-371	NM_010046	13350	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	0.040000	0.601990	
mm_126380.1	chr15	80173159	80173359	+	1	NA	NA	NA	-462	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.080000	0.631841	
mm_60320.1	chr7	44216361	44216561	+	1	NA	NA	NA	-13	NM_008456	16622	Mm.443373	NM_008456	ENSMUSG00000066512	Klk1b5	Klk5|kallikrein|mGK-5	kallikrein 1-related peptidase b5	protein-coding	0.005000	0.557214	-34(GGGTTTTTAAAG,-,0.00),-32(GTTTTTAAAGTC,+,0.00)
mm_160157.1	chr7	44188137	44188337	+	1	NA	NA	NA	1	NM_010643	16617	Mm.483098	NM_010643	ENSMUSG00000063713	Klk1b24	Klk24|mGk-24	kallikrein 1-related peptidase b24	protein-coding	0.000000	0.557214	-36(GGGTTTTAAAGT,-,0.00)
mm_30407.1	chr3	152253661	152253861	-	1	NA	NA	NA	12559	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.010000	0.398010	
mm_162036.1	chr19	55311655	55311855	-	1	NA	NA	NA	4277	NM_025883	66980	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369	zinc finger, DHHC domain containing 6	protein-coding	0.020000	0.487562	
mm_137995.1	chr17	33638036	33638236	+	1	NA	NA	NA	41	NR_028279	378460	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	0.010000	0.542289	
mm_74585.1	chr8	11313925	11314125	-	1	NA	NA	NA	-1199	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.025000	0.572139	
mm_20435.1	chr2	129306508	129306708	-	1	NA	NA	NA	3364	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.025000	0.457711	
mm_168894.1	chr1	25016687	25016887	+	1	NA	NA	NA	261167	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding	0.000000	0.388060	
mm_142693.1	chr17	47833140	47833340	-	1	NA	NA	NA	51	NM_001276391	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.085000	0.706468	
mm_66715.1	chr7	46059067	46059267	-	1	NA	NA	NA	25471	NM_153057	211548	Mm.274811	NM_153057	ENSMUSG00000030835	Nomo1	D7Ertd156e|Nomo|pM5	nodal modulator 1	protein-coding	0.030000	0.532338	
mm_16898.1	chr2	13271342	13271542	-	1	NA	NA	NA	-27	NM_009105	20163	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.055000	0.577114	
mm_172296.1	chr7	100285478	100285678	+	1	NA	NA	NA	58	NM_177161	320452	Mm.150294	NM_177161	ENSMUSG00000051048	P4ha3	D930031A02Rik	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III	protein-coding	0.165000	0.815920	
mm_72271.1	chr8	75099864	75100064	+	1	NA	NA	NA	6346	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.010000	0.547264	
mm_60337.1	chr7	44335674	44335874	+	1	NA	NA	NA	25510	NM_001034115	243961	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3/ankyrin domain gene 1	protein-coding	0.110000	0.776119	
mm_151092.1	chr19	47732848	47733048	+	1	NA	NA	NA	1192	NM_026377	67788	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	0.025000	0.547264	
mm_55052.1	chr6	49045278	49045478	-	1	NA	NA	NA	8860	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.025000	0.532338	
mm_19750.1	chr2	104849637	104849837	-	1	NA	NA	NA	113	NM_178695	228413	Mm.259609	NM_178695	ENSMUSG00000027171	Prrg4	9930111I18Rik|TMG4	proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	protein-coding	0.110000	0.701493	
mm_133245.1	chr16	77115525	77115725	+	1	NA	NA	NA	101556	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.040000	0.477612	
mm_137324.1	chr17	24932747	24932947	+	1	NA	NA	NA	4130	NM_001163448	30957	Mm.43081	NM_013931	ENSMUSG00000024163	Mapk8ip3	BB120594|D17Wsu15e|JIP-3|JSAP1|JSAP1a|JSAP1b|JSAP1c|JSAP1d|Jip3|Syd2|mKIAA1066	mitogen-activated protein kinase 8 interacting protein 3	protein-coding	0.015000	0.348259	
mm_128542.1	chr15	54986763	54986963	-	1	NA	NA	NA	-66717	NM_001285994	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.025000	0.502488	
mm_164816.1	chr18	34409302	34409502	+	1	NA	NA	NA	-21	NM_001163004	53871	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	0.090000	0.651741	
mm_149213.1	chr19	9984170	9984370	+	1	NA	NA	NA	1624	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.025000	0.467662	
mm_27308.1	chr3	50366343	50366543	-	1	NA	NA	NA	77170	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.343284	
mm_131618.1	chr16	19760697	19760897	+	1	NA	NA	NA	563	NM_001159407	108105	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	0.050000	0.537313	
mm_107778.1	chr12	60721660	60721860	+	1	NA	NA	NA	800060	NR_045049	100504101	Mm.235026	NR_045049		Gm20063	-	predicted gene, 20063	ncRNA	0.055000	0.497512	-34(GGTTATAAAAGC,-,0.00)
mm_122639.1	chr14	51198843	51199043	-	1	NA	NA	NA	-3020	NM_007449	11731	Mm.377077	NM_007449	ENSMUSG00000047894	Ang2	Angrp|Raa3|Rnase5b	angiogenin, ribonuclease A family, member 2	protein-coding	0.015000	0.512438	
mm_20676.1	chr2	132264119	132264319	-	1	NA	NA	NA	1071	NM_138651	110911	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.040000	0.497512	
mm_120035.1	chr14	56206287	56206487	+	1	NA	NA	NA	5020	NM_010374	14943	Mm.457976	NM_010374	ENSMUSG00000015441	Gzmf	CCP4|Ctla-7|Ctla7|MCSP-3	granzyme F	protein-coding	0.000000	0.512438	-18(CCTTTAATAGCA,+,0.00)
mm_164390.1	chr16	32539016	32539216	+	1	NA	NA	NA	42835	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.010000	0.537313	-34(CACTATAAAAGG,-,0.00)
mm_125229.1	chr15	34134220	34134420	+	1	NA	NA	NA	51601	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.005000	0.348259	
mm_165365.1	chr2	126556427	126556627	+	1	NA	NA	NA	3503	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0.010000	0.477612	
mm_26736.1	chr3	5576139	5576339	-	1	NA	NA	NA	9	NM_001163301	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.085000	0.606965	
mm_108269.1	chr12	78748934	78749134	+	1	NA	NA	NA	87	NM_019579	56217	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	0.080000	0.676617	
mm_2274.1	chr1	91250395	91250595	+	1	NA	NA	NA	176	NM_026454	67921	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0.150000	0.771144	
mm_107118.1	chr12	18514376	18514576	+	1	NA	NA	NA	-34	NM_001033157	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.105000	0.736318	
mm_42579.1	chr5	117273694	117273894	+	1	NA	NA	NA	13770	NM_018858	23980	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	0.015000	0.383085	
mm_46751.1	chr5	112120969	112121169	-	1	NA	NA	NA	-85694	NR_045377	75569	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	0.020000	0.542289	
mm_101387.1	chr11	24075601	24075801	-	1	NA	NA	NA	-2355	NM_016707	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.020000	0.477612	
mm_45668.1	chr5	77211130	77211330	-	1	NA	NA	NA	-25	NM_001289767	69982	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0.035000	0.567164	
mm_32492.1	chr4	108165387	108165587	+	1	NA	NA	NA	50	NM_001254754	52430	Mm.270783	NM_026728	ENSMUSG00000028601	Echdc2	1300017C12Rik|2610009M20Rik|D4Ertd765e	enoyl Coenzyme A hydratase domain containing 2	protein-coding	0.125000	0.716418	
mm_93871.1	chr10	123196368	123196568	-	1	NA	NA	NA	551	NM_027604	14479	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	0.095000	0.577114	
mm_22908.1	chr3	31017807	31018007	+	1	NA	NA	NA	-21059	NR_105975	102465610		NR_105975	ENSMUSG00000098890	Mir7008	Gm27752|mmu-mir-7008	microRNA 7008	ncRNA	0.015000	0.487562	
mm_139403.1	chr17	52351427	52351627	+	1	NA	NA	NA	-251182	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.020000	0.472637	
mm_120293.1	chr14	63137962	63138162	+	1	NA	NA	NA	15600	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.005000	0.477612	
mm_140630.1	chr17	12507002	12507202	-	1	NA	NA	NA	602	NM_011395	20519	Mm.99252	NM_011395	ENSMUSG00000023828	Slc22a3	EMT|Oct3|Orct3|Slca22a3	solute carrier family 22 (organic cation transporter), member 3	protein-coding	0.095000	0.701493	
mm_80421.1	chr9	77917116	77917316	+	1	NA	NA	NA	-149	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.045000	0.527363	
mm_11839.1	chr2	45112146	45112346	+	1	NA	NA	NA	-14	NR_110571	433424	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|OTTMUSG00000012358|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0.015000	0.407960	
mm_67007.1	chr7	65338260	65338460	-	1	NA	NA	NA	32884	NM_001163574	21872	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.005000	0.333333	
mm_58445.1	chr7	3298980	3299180	+	1	NA	NA	NA	-4452	NM_001291434	18752	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	0.015000	0.482587	
mm_63762.1	chr7	131116620	131116820	+	1	NA	NA	NA	29563	NM_173409	233918	Mm.78341	NM_173409	ENSMUSG00000013668	4933402N03Rik	4930412O05	RIKEN cDNA 4933402N03 gene	protein-coding	0.025000	0.462687	
mm_64389.1	chr7	142488742	142488942	+	1	NA	NA	NA	-9994	NM_001347549	21957	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	0.015000	0.587065	
mm_96512.1	chr11	68473736	68473936	+	1	NA	NA	NA	-29183	NM_001004435	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.035000	0.601990	
mm_7594.1	chr1	125435796	125435996	-	1	NA	NA	NA	-169	NM_001205386	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.070000	0.606965	
mm_141669.1	chr17	33890518	33890718	-	1	NA	NA	NA	15	NM_001195298	100502766	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	0.110000	0.646766	
mm_33322.1	chr4	129083956	129084156	+	1	NA	NA	NA	-21474	NM_025452	66260	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.040000	0.646766	
mm_73848.1	chr8	117700974	117701174	+	1	NA	NA	NA	-872	NM_008290	15486	Mm.276466	NM_008290	ENSMUSG00000031844	Hsd17b2	AI194836|AI194967|AI255511	hydroxysteroid (17-beta) dehydrogenase 2	protein-coding	0.020000	0.487562	
mm_1031.1	chr1	58755128	58755328	+	1	NA	NA	NA	24676	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.015000	0.293532	
mm_28403.1	chr3	90242462	90242662	-	1	NA	NA	NA	-12	NM_001307935	78284	Mm.299952	NM_030080	ENSMUSG00000027938	Creb3l4	1700012K17Rik|5330432F22Rik|AIBZIP|AV040530|AV258827|CREB4|JAL|TISP40|acre1	cAMP responsive element binding protein 3-like 4	protein-coding	0.025000	0.417910	
mm_15658.1	chr2	163205556	163205756	+	1	NA	NA	NA	-19798	NM_001098799	269389	Mm.207709	NM_001098799	ENSMUSG00000074607	Tox2	AI851523|AV026525|BI987407|Gcx1|RxHMG1	TOX high mobility group box family member 2	protein-coding	0.010000	0.437811	
mm_165169.1	chr2	26476370	26476570	+	1	NA	NA	NA	-6351	NR_105962	102465602		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.020000	0.547264	
mm_80502.1	chr9	78615388	78615588	+	1	NA	NA	NA	-58	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.045000	0.542289	
mm_109140.1	chr12	106527795	106527995	+	1	NA	NA	NA	-80229	NR_036593	76639	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA	0.040000	0.502488	
mm_37742.1	chr4	129595081	129595281	-	1	NA	NA	NA	5467	NM_018799	54709	Mm.250874	NM_018799	ENSMUSG00000028798	Eif3i	36kDa|D4Ertd632e|Eif3s2|Trip1	eukaryotic translation initiation factor 3, subunit I	protein-coding	0.055000	0.621891	
mm_133840.1	chr16	96200446	96200646	+	1	NA	NA	NA	76	NM_015825	50795	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0.040000	0.597015	
mm_98755.1	chr11	96545491	96545691	+	1	NA	NA	NA	81000	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.005000	0.398010	
mm_13342.1	chr2	102787577	102787777	+	1	NA	NA	NA	81239	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.005000	0.462687	
mm_80388.1	chr9	75625639	75625839	+	1	NA	NA	NA	7	NM_027309	70082	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	0.140000	0.805970	
mm_115612.1	chr13	12022191	12022391	-	1	NA	NA	NA	84654	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.000000	0.502488	
mm_76675.1	chr8	93812636	93812836	-	1	NA	NA	NA	819	NR_026888	75809	Mm.443272	NM_029449		4930488L21Rik	4930452J22Rik	RIKEN cDNA 4930488L21 gene	ncRNA	0.070000	0.651741	
mm_47557.1	chr5	124393740	124393940	-	1	NA	NA	NA	32074	NM_001081203	243272	Mm.23879	NM_001081203	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch homolog 1 (Drosophila)	protein-coding	0.025000	0.457711	-39(AGCTCTAAAAAC,-,0.00)
mm_17772.1	chr2	32824860	32825060	-	1	NA	NA	NA	22272	NM_009295	20910	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0.005000	0.358209	
mm_114768.1	chr13	88821397	88821597	+	1	NA	NA	NA	25	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.075000	0.651741	
mm_7766.1	chr1	131199867	131200067	-	1	NA	NA	NA	218	NM_001311094	54354	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.050000	0.592040	
mm_102528.1	chr11	60932863	60933063	-	1	NA	NA	NA	906	NM_008928	26397	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0.020000	0.537313	
mm_103644.1	chr11	78965718	78965918	-	1	NA	NA	NA	19106	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.025000	0.527363	
mm_69650.1	chr7	139582700	139582900	-	1	NA	NA	NA	-3	NR_027857	14912	Mm.28308	NM_183248	ENSMUSG00000041309	Nkx6-2	Gtx|Nkx6.2	NK6 homeobox 2	protein-coding	0.135000	0.721393	
mm_76085.1	chr8	79399357	79399557	-	1	NA	NA	NA	11	NM_008539	17125	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.150000	0.761194	
mm_96018.1	chr11	59542936	59543136	+	1	NA	NA	NA	350	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.025000	0.467662	-21(CTTTTAATACCA,+,0.00)
mm_150352.1	chr19	34644488	34644688	+	1	NA	NA	NA	3699	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.015000	0.467662	
mm_78235.1	chr9	21616156	21616356	+	1	NA	NA	NA	87	NM_001174078	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.125000	0.731343	
mm_109147.1	chr12	107159630	107159830	+	1	NA	NA	NA	-443406	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.015000	0.412935	
mm_68436.1	chr7	109960025	109960225	-	1	NA	NA	NA	297	NM_021494	19347	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	0.150000	0.766169	
mm_132088.1	chr16	30692183	30692383	+	1	NA	NA	NA	92560	NM_177632	224093	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.040000	0.547264	
mm_150971.1	chr19	46501082	46501282	+	1	NA	NA	NA	-466	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.095000	0.711443	
mm_119901.1	chr14	54948042	54948242	+	1	NA	NA	NA	1000	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.015000	0.562189	
mm_79237.1	chr9	50500978	50501178	+	1	NA	NA	NA	3727	NR_040714	69631	Mm.414996	NR_040714	ENSMUSG00000101304	Plet1os	2310014F07Rik	placenta expressed transcript 1, opposite strand	ncRNA	0.025000	0.492537	
mm_76898.1	chr8	105816765	105816965	-	1	NA	NA	NA	10485	NM_145824	74334	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	0.005000	0.527363	
mm_165756.1	chr3	112489114	112489314	+	1	NA	NA	NA	607311	NR_045362	625585	Mm.389497	NR_045362	ENSMUSG00000104543	Gm6602	-	predicted gene 6602	ncRNA	0.005000	0.383085	34(TCTTATAGAGAC,+,0.00)
mm_144362.1	chr18	20376632	20376832	+	1	NA	NA	NA	3	NM_181682	225256	Mm.269128	NM_181682	ENSMUSG00000061928	Dsg1b	Dsg5|dsg1-beta	desmoglein 1 beta	protein-coding	0.005000	0.482587	-1(GTTTTTAGGGTG,+,0.00)
mm_4632.1	chr1	179668182	179668382	+	1	NA	NA	NA	51	NM_178653	109232	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	0.135000	0.761194	
mm_108968.1	chr12	102469074	102469274	+	1	NA	NA	NA	40	NM_001199004	27277	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	0.140000	0.736318	
mm_3807.1	chr1	158362271	158362471	+	1	NA	NA	NA	67	NM_001205204	11899	Mm.329586	NM_007495	ENSMUSG00000026587	Astn1	Astn|GC14|mKIAA0289	astrotactin 1	protein-coding	0.025000	0.567164	
mm_172999.1	chrM	1515	1715	+	1	NA	NA	NA	NA	NA									0.010000	0.318408	-53(CCTTTAATAGTG,+,0.00),-10(AGGCCTAAAAGC,-,0.00)
mm_97642.1	chr11	79306566	79306766	+	1	NA	NA	NA	-33226	NM_010897	18015	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0.030000	0.572139	
mm_153969.1	chr19	47857910	47858110	-	1	NA	NA	NA	3037	NM_010362	14873	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0.020000	0.487562	
mm_83128.1	chr9	40430778	40430978	-	1	NA	NA	NA	24886	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.010000	0.427861	
mm_70517.1	chr8	12947896	12948096	+	1	NA	NA	NA	55	NR_128567	104797311		NR_128567	ENSMUSG00000105030	Gm38671	Mir9768|mmu-mir-9768	predicted gene, 38671	ncRNA	0.060000	0.661692	
mm_160338.1	chr8	14727063	14727263	+	1	NA	NA	NA	-161373	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.030000	0.577114	
mm_171843.1	chr5	16755202	16755402	+	1	NA	NA	NA	201401	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.015000	0.442786	-39(GCTTTTAAATCT,+,0.00)
mm_69261.1	chr7	127893353	127893553	-	1	NA	NA	NA	2164	NM_178600	27973	Mm.29703	NM_178600	ENSMUSG00000096145	Vkorc1	D7Wsu86e	vitamin K epoxide reductase complex, subunit 1	protein-coding	0.025000	0.487562	
mm_38634.1	chr4	142453434	142453634	-	1	NA	NA	NA	-214133	NM_001109685	71529	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	0.015000	0.452736	
mm_13797.1	chr2	118901542	118901742	+	1	NA	NA	NA	27	NM_001045523	228536	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0.155000	0.845771	
mm_134645.1	chr16	21780224	21780424	-	1	NA	NA	NA	7510	NM_023737	74147	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0.010000	0.368159	-7(TTTTTTAAAGAG,+,0.00)
mm_23970.1	chr3	85574029	85574229	+	1	NA	NA	NA	0	NM_144896	229487	Mm.52275	NM_144896	ENSMUSG00000028085	Gatb	9430026F02Rik|Pet112|Pet112l	glutamyl-tRNA(Gln) amidotransferase, subunit B	protein-coding	0.085000	0.631841	
mm_27550.1	chr3	58132035	58132235	-	1	NA	NA	NA	31672	NR_040538	67850	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	0.005000	0.338308	
mm_45995.1	chr5	90506611	90506811	-	1	NA	NA	NA	-12238	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.000000	0.457711	
mm_150867.1	chr19	45047465	45047665	+	1	NA	NA	NA	-11	NM_053197	94280	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.045000	0.661692	
mm_50053.1	chr6	41178213	41178413	+	1	NA	NA	NA	-123959	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.005000	0.472637	-33(CCATTTATAAAC,+,0.00)
mm_24450.1	chr3	90612775	90612975	+	1	NA	NA	NA	-19	NM_011313	20200	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0.020000	0.522388	
mm_130033.1	chr15	88977836	88978036	-	1	NA	NA	NA	617	NM_133241	170790	Mm.32780	NM_133241	ENSMUSG00000035805	Mlc1	AW048630|BB074274|Kiaa0027-hp|LVM|MLC|VL|WKL1|mKIAA0027	megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	protein-coding	0.035000	0.611940	
mm_128299.1	chr15	37459254	37459454	-	1	NA	NA	NA	28	NM_001170867	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.035000	0.587065	
mm_53824.1	chr6	147264001	147264201	+	1	NA	NA	NA	-88	NM_008970	19227	Mm.28440	NM_008970	ENSMUSG00000048776	Pthlh	PLP|PTH-like|Pthrp	parathyroid hormone-like peptide	protein-coding	0.115000	0.741294	
mm_77905.1	chr9	7349013	7349213	+	1	NA	NA	NA	1739	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.507463	
mm_36078.1	chr4	58206412	58206612	-	1	NA	NA	NA	84	NM_022814	64817	Mm.261024	NM_022814	ENSMUSG00000028369	Svep1	1110021D17Rik|4833413O10Rik|AA387071|D430029O09Rik|Polydom	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	protein-coding	0.075000	0.636816	
mm_40856.1	chr5	73502584	73502784	+	1	NA	NA	NA	11658	NM_178896	100737	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.025000	0.572139	
mm_11174.1	chr2	28698758	28698958	+	1	NA	NA	NA	793	NM_027283	69987	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	0.015000	0.547264	
mm_116491.1	chr13	44704409	44704609	-	1	NA	NA	NA	-26265	NM_021878	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.015000	0.492537	-37(GACTATAAAAAG,-,0.00)
mm_109712.1	chr12	113896821	113897021	+	1	NA	NA	NA	353013	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.005000	0.427861	
mm_58919.1	chr7	17716131	17716331	+	1	NA	NA	NA	2979	NM_028480	73250	Mm.244138	NM_028480	ENSMUSG00000008789	Ceacam5	1600029H12Rik|Psg30	carcinoembryonic antigen-related cell adhesion molecule 5	protein-coding	0.005000	0.467662	
mm_20010.1	chr2	119229736	119229936	-	1	NA	NA	NA	29	NM_028104	72112	Mm.46317	NM_028104	ENSMUSG00000027317	Ppp1r14d	2010107K19Rik|GBPI-1|Ppp1r14	protein phosphatase 1, regulatory (inhibitor) subunit 14D	protein-coding	0.000000	0.552239	
mm_119561.1	chr14	48798010	48798210	+	1	NA	NA	NA	-80763	NR_033783	66770	Mm.136954	NR_033783		4933429O19Rik	1700031B11Rik	RIKEN cDNA 4933429O19 gene	ncRNA	0.010000	0.462687	
mm_22586.1	chr3	13471927	13472127	+	1	NA	NA	NA	372	NM_001163328	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.015000	0.333333	
mm_87083.1	chr10	29313526	29313726	+	1	NA	NA	NA	126	NM_025855	52665	Mm.28930	NM_025855	ENSMUSG00000019883	Echdc1	1700028A24Rik|AI314462|AI930038|D10Ertd667e|MMCD	enoyl Coenzyme A hydratase domain containing 1	protein-coding	0.060000	0.557214	
mm_20888.1	chr2	148871856	148872056	-	1	NA	NA	NA	3556	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.020000	0.527363	
mm_73320.1	chr8	105264577	105264777	+	1	NA	NA	NA	29	NM_015821	50788	Mm.334764	NM_015821	ENSMUSG00000033313	Fbxl8	FBL8	F-box and leucine-rich repeat protein 8	protein-coding	0.105000	0.706468	
mm_45402.1	chr5	66151833	66152033	-	1	NA	NA	NA	21	NM_001127382	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.045000	0.482587	
mm_78875.1	chr9	44483055	44483255	+	1	NA	NA	NA	-15981	NM_030256	80288	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.100000	0.736318	
mm_168545.1	chr1	162740269	162740469	-	1	NA	NA	NA	187	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.105000	0.681592	
mm_81412.1	chr9	109052793	109052993	+	1	NA	NA	NA	-1973	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.015000	0.557214	
mm_163018.1	chr11	46706990	46707190	-	1	NA	NA	NA	14	NM_134249	171284	Mm.234654	NM_134249	ENSMUSG00000040413	Timd2	AA816106|AU019358|AU019662|C78111|G9D3|TIM-2|Tim2	T cell immunoglobulin and mucin domain containing 2	protein-coding	0.015000	0.492537	
mm_129607.1	chr15	79932429	79932629	-	1	NA	NA	NA	117	NM_144811	52609	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	0.130000	0.756219	
mm_120499.1	chr14	65981403	65981603	+	1	NA	NA	NA	13020	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.030000	0.517413	
mm_108399.1	chr12	81152327	81152527	+	1	NA	NA	NA	-13724	NR_037227	100526532		NR_037227	ENSMUSG00000092673	Mir3067	mir-3067|mmu-mir-3067	microRNA 3067	ncRNA	0.015000	0.527363	
mm_164691.1	chr17	47731386	47731586	+	1	NA	NA	NA	4644	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.020000	0.497512	
mm_102892.1	chr11	69416108	69416308	-	1	NA	NA	NA	-2533	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.030000	0.681592	
mm_118858.1	chr14	25842034	25842234	+	1	NA	NA	NA	-21	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.110000	0.686567	
mm_72145.1	chr8	72135754	72135954	+	1	NA	NA	NA	562	NM_001001491	326618	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	0.090000	0.676617	
mm_75208.1	chr8	39605198	39605398	-	1	NA	NA	NA	37380	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.303483	
mm_81401.1	chr9	109038510	109038710	+	1	NA	NA	NA	43	NM_001284332	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.105000	0.716418	
mm_142433.1	chr17	45570496	45570696	-	1	NA	NA	NA	2665	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.005000	0.482587	
mm_41068.1	chr5	87666871	87667071	+	1	NA	NA	NA	763	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.373134	
mm_88787.1	chr10	80609244	80609444	+	1	NA	NA	NA	84	NR_105877	102465550		NR_105877	ENSMUSG00000099283	Mir6912	Gm27990|mmu-mir-6912	microRNA 6912	ncRNA	0.005000	0.572139	
mm_156740.1	chrX	159942917	159943117	+	1	NA	NA	NA	324	NM_001290664	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.000000	0.477612	
mm_95414.1	chr11	50025281	50025481	+	1	NA	NA	NA	50	NM_001290750	59044	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.205000	0.840796	
mm_32154.1	chr4	99955399	99955599	+	1	NA	NA	NA	26048	NM_028132	72157	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.015000	0.512438	
mm_127193.1	chr15	99033652	99033852	+	1	NA	NA	NA	3861	NM_009448	22146	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.005000	0.467662	-63(TGGTTTTAAAGG,-,0.00),-62(GGTTTTAAAGGG,-,0.00),-35(CCCCATAAAGGA,-,0.00)
mm_126748.1	chr15	85736015	85736215	+	1	NA	NA	NA	339	NM_011144	19013	Mm.212789	NM_011144	ENSMUSG00000022383	Ppara	4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar	peroxisome proliferator activated receptor alpha	protein-coding	0.045000	0.582090	
mm_100638.1	chr11	121748448	121748648	+	1	NA	NA	NA	46121	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.000000	0.452736	-30(CTTTATATACCC,+,0.00)
mm_148919.1	chr19	6976334	6976534	+	1	NA	NA	NA	1386	NM_008889	18938	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.010000	0.606965	
mm_134156.1	chr16	10790811	10791011	-	1	NA	NA	NA	3	NM_013638	19120	Mm.291887	NM_013638	ENSMUSG00000050058	Prm3	BC061127|PX|Pxg	protamine 3	protein-coding	0.025000	0.636816	
mm_69158.1	chr7	127162528	127162728	-	1	NA	NA	NA	-24805	NM_001037810	20737	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	0.020000	0.532338	
mm_145152.1	chr18	46404851	46405051	+	1	NA	NA	NA	60865	NR_045438	72076	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.015000	0.432836	
mm_42436.1	chr5	115429459	115429659	+	1	NA	NA	NA	-126	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.145000	0.840796	
mm_25039.1	chr3	98286908	98287108	+	1	NA	NA	NA	6577	NM_008256	15360	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.015000	0.373134	
mm_74729.1	chr8	17535540	17535740	-	1	NA	NA	NA	-255	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.100000	0.681592	
mm_46395.1	chr5	104072816	104073016	-	1	NA	NA	NA	4692	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.015000	0.527363	
mm_153858.1	chr19	46502843	46503043	-	1	NA	NA	NA	1295	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.100000	0.636816	
mm_90556.1	chr10	128110725	128110925	+	1	NA	NA	NA	18042	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.010000	0.467662	
mm_161004.1	chr11	116593597	116593797	+	1	NA	NA	NA	10	NM_009591	11298	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0.000000	0.567164	
mm_2508.1	chr1	106214331	106214531	+	1	NA	NA	NA	42562	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.005000	0.333333	
mm_78249.1	chr9	21695523	21695723	+	1	NA	NA	NA	-27953	NM_001252658	16835	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.000000	0.358209	
mm_24185.1	chr3	88593078	88593278	+	1	NA	NA	NA	13507	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.015000	0.567164	
mm_136236.1	chr16	90727258	90727458	-	1	NA	NA	NA	13	NM_025642	66578	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0.080000	0.606965	
mm_112036.1	chr12	111574226	111574426	-	1	NA	NA	NA	76	NR_045295	100504687	Mm.26072	NR_045295	ENSMUSG00000096995	2810029C07Rik	AU017849	RIKEN cDNA 2810029C07 gene	ncRNA	0.045000	0.626866	
mm_100704.1	chr11	3648625	3648825	-	1	NA	NA	NA	89	NR_002321	544752	Mm.390314	NR_002321	ENSMUSG00000056579	Tug1	AI316828	taurine upregulated gene 1	ncRNA	0.170000	0.771144	
mm_33602.1	chr4	132568719	132568919	+	1	NA	NA	NA	4752	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.005000	0.407960	
mm_87811.1	chr10	60301811	60302011	+	1	NA	NA	NA	17450	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.015000	0.572139	
mm_166225.1	chr5	65080863	65081063	+	1	NA	NA	NA	-26605	NM_001347355	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.010000	0.447761	
mm_38706.1	chr4	145215410	145215610	-	1	NA	NA	NA	-20505	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.005000	0.532338	
mm_38073.1	chr4	134127604	134127804	-	1	NA	NA	NA	1049	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.030000	0.562189	
mm_138592.1	chr17	35509317	35509517	+	1	NA	NA	NA	610	NM_001252452	18999	Mm.17031	NM_013633	ENSMUSG00000024406	Pou5f1	NF-A3|Oct-3|Oct-3/4|Oct-4|Oct3|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4	POU domain, class 5, transcription factor 1	protein-coding	0.030000	0.562189	
mm_22022.1	chr2	168003463	168003663	-	1	NA	NA	NA	7030	NM_001080708	69553	Mm.68454	NM_001080708	ENSMUSG00000074577	Fam65c	2310033K02Rik|Gm124	family with sequence similarity 65, member C	protein-coding	0.050000	0.646766	
mm_171484.1	chr4	146097141	146097341	+	1	NA	NA	NA	-71	NM_001037926	626316	Mm.270762	NM_001037926	ENSMUSG00000066009	Zfp987	Gm13051|OTTMUSG00000010104|OTTMUSG00000010173	zinc finger protein 987	protein-coding	0.015000	0.472637	
mm_124889.1	chr15	10313946	10314146	+	1	NA	NA	NA	20395	NM_001253782	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.015000	0.442786	
mm_147101.1	chr18	35655077	35655277	-	1	NA	NA	NA	22	NM_001270646	381148	Mm.297784	NM_001270646	ENSMUSG00000073600	Prob1	Gm1614	proline rich basic protein 1	protein-coding	0.085000	0.701493	
mm_55854.1	chr6	83441579	83441779	-	1	NA	NA	NA	-1	NM_183138	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.100000	0.776119	
mm_40258.1	chr5	38230492	38230692	+	1	NA	NA	NA	10110	NM_025281	17089	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	0.020000	0.472637	
mm_113929.1	chr13	49609006	49609206	+	1	NA	NA	NA	1035	NM_008760	18295	Mm.4258	NM_008760	ENSMUSG00000021390	Ogn	3110079A16Rik|OG|OIF|SLRR3A|mimecan|mimican	osteoglycin	protein-coding	0.005000	0.412935	-34(GCTTTTAAAAAC,+,0.00),-34(GCTTTTAAAAAC,-,0.00)
mm_36650.1	chr4	94587253	94587453	-	1	NA	NA	NA	-6297	NM_001081019	667250	Mm.449778	NM_001081019		Gm12657	H3mm12|OTTMUSG00000007855	predicted gene 12657	protein-coding	0.005000	0.398010	
mm_149818.1	chr19	24197457	24197657	+	1	NA	NA	NA	-23417	NM_001198985	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.010000	0.547264	
mm_123952.1	chr14	73797233	73797433	-	1	NA	NA	NA	244547	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	0.035000	0.437811	
mm_40806.1	chr5	70086475	70086675	+	1	NA	NA	NA	-494271	NM_001347363	67980	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	0.010000	0.353234	
mm_69479.1	chr7	133776593	133776793	-	1	NA	NA	NA	110	NM_001286032	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.140000	0.746269	
mm_172963.1	chr9	88719448	88719648	-	1	NA	NA	NA	250	NM_001128601	100039707	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0.100000	0.651741	
mm_12501.1	chr2	71868420	71868620	+	1	NA	NA	NA	-4704	NM_172665	228026	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.005000	0.487562	
mm_92616.1	chr10	80141216	80141416	-	1	NA	NA	NA	-959	NM_001347092	66043	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0.045000	0.582090	
mm_149895.1	chr19	25423804	25424004	+	1	NA	NA	NA	-81802	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.010000	0.368159	
mm_76706.1	chr8	94591286	94591486	-	1	NA	NA	NA	10340	NM_028221	102122	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	0.005000	0.333333	-46(GTTTTAATGCCC,+,0.00)
mm_57205.1	chr6	122850936	122851136	-	1	NA	NA	NA	5121	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.020000	0.517413	
mm_104497.1	chr11	95842341	95842541	-	1	NA	NA	NA	-2	NM_025659	66610	Mm.485545	NM_025659	ENSMUSG00000018381	Abi3	2210414K06Rik|AI987680|NESH	ABI gene family, member 3	protein-coding	0.010000	0.587065	
mm_20769.1	chr2	142879531	142879731	-	1	NA	NA	NA	21833	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.020000	0.502488	-89(GGCTATTAATAG,-,0.00)
mm_76774.1	chr8	95888270	95888470	-	1	NA	NA	NA	-5	NM_010325	14719	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	0.085000	0.666667	-21(CCTTTTAGGAGC,+,0.00)
mm_79636.1	chr9	59542727	59542927	+	1	NA	NA	NA	3287	NM_010421	15211	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.000000	0.527363	
mm_141682.1	chr17	33940193	33940393	-	1	NA	NA	NA	37	NM_001185182	14976	Mm.2948	NM_010385	ENSMUSG00000024309	Pfdn6	H-2Ke2|H2-Ke2|Ke-2	prefoldin subunit 6	protein-coding	0.075000	0.527363	
mm_80310.1	chr9	74353983	74354183	+	1	NA	NA	NA	243749	NM_001033500	546144	Mm.335289	NM_177908	ENSMUSG00000044976	Wdr72	AW558070|D230040E23	WD repeat domain 72	protein-coding	0.010000	0.427861	
mm_171894.1	chr5	3943082	3943282	-	1	NA	NA	NA	14996	NM_194462	100986	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	0.020000	0.547264	-29(CCCTTTATAAGT,-,0.00)
mm_10387.1	chr2	12924027	12924227	+	1	NA	NA	NA	86	NM_001305437	19212	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0.040000	0.606965	
mm_157285.1	chrX	20861050	20861250	-	1	NA	NA	NA	2032	NR_049190	100885829		NR_049190	ENSMUSG00000093408	Mir5617	Gm25192|mir-5617|mmu-mir-5617	microRNA 5617	ncRNA	0.005000	0.432836	
mm_154034.1	chr19	53528777	53528977	-	1	NA	NA	NA	-441	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.110000	0.691542	
mm_173203.1	chrX	69605908	69606108	-	1	NA	NA	NA	245677	NM_008032	14266	Mm.466576	NM_008032	ENSMUSG00000031189	Aff2	FMR2P|Fmr2|Ox19|Oxh	AF4/FMR2 family, member 2	protein-coding	0.035000	0.527363	
mm_136003.1	chr16	75585927	75586127	-	1	NA	NA	NA	34	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.020000	0.407960	
mm_87055.1	chr10	28836633	28836833	+	1	NA	NA	NA	86774	NR_033601	114676	Mm.390292	NR_033601		4930519F09Rik	-	pyruvate dehydrogenase E1 alpha 1 pseudogene	pseudo	0.000000	0.333333	
mm_118348.1	chr13	114931842	114932042	-	1	NA	NA	NA	99	NM_008396	16398	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5	integrin alpha 2	protein-coding	0.060000	0.597015	
mm_171123.1	chr3	144156722	144156922	+	1	NA	NA	NA	45510	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.020000	0.462687	
mm_136047.1	chr16	78559451	78559651	-	1	NA	NA	NA	-765	NR_040569	75818	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	0.005000	0.378109	
mm_73312.1	chr8	105175276	105175476	+	1	NA	NA	NA	4702	NM_001161458	12400	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0.000000	0.318408	
mm_65542.1	chr7	27121761	27121961	-	1	NA	NA	NA	1906	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.030000	0.577114	
mm_120222.1	chr14	62837665	62837865	+	1	NA	NA	NA	44	NR_106174	102465889		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	0.090000	0.701493	
mm_156128.1	chrX	119386149	119386349	+	1	NA	NA	NA	-540947	NM_053114	93728	Mm.125979	NM_053114	ENSMUSG00000034732	Pabpc5	C820015E17	poly(A) binding protein, cytoplasmic 5	protein-coding	0.005000	0.298507	
mm_47082.1	chr5	117115794	117115994	-	1	NA	NA	NA	99	NM_001122666	71954	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	0.180000	0.825871	
mm_67264.1	chr7	75780184	75780384	-	1	NA	NA	NA	-68054	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.015000	0.512438	
mm_20624.1	chr2	131909678	131909878	-	1	NA	NA	NA	-150	NM_011170	19122	Mm.648	NM_011170	ENSMUSG00000079037	Prnp	AA960666|AI325101|CD230|PrP|PrP<C>|PrPC|PrPSc|Prn-i|Prn-p|Sinc|prP27-30|prP33-35C	prion protein	protein-coding	0.060000	0.542289	
mm_155389.1	chrX	71932339	71932539	+	1	NA	NA	NA	1	NR_027801	382221	Mm.295937	NM_001033470	ENSMUSG00000073130	Gm1141	Pasd1	predicted gene 1141	ncRNA	0.060000	0.492537	
mm_55752.1	chr6	78373363	78373563	-	1	NA	NA	NA	2578	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.000000	0.328358	
mm_25843.1	chr3	129217493	129217693	+	1	NA	NA	NA	3661	NM_001287048	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.040000	0.582090	
mm_4986.1	chr1	191718184	191718384	+	1	NA	NA	NA	-111	NM_001134829	226856	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0.140000	0.830846	
mm_157185.1	chrX	10216820	10217020	-	1	NA	NA	NA	-125	NM_011285	19893	Mm.247556	NM_011285	ENSMUSG00000031174	Rpgr	Rp3h	retinitis pigmentosa GTPase regulator	protein-coding	0.065000	0.567164	
mm_83746.1	chr9	51105781	51105981	-	1	NA	NA	NA	-2236	NR_029655	723849		NR_029655	ENSMUSG00000065492	Mir34b	Mirn34b|mir-34b|mmu-mir-34b	microRNA 34b	ncRNA	0.005000	0.388060	
mm_51303.1	chr6	72310386	72310586	+	1	NA	NA	NA	5876	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.015000	0.517413	
mm_56056.1	chr6	86765722	86765922	-	1	NA	NA	NA	9292	NM_001331120	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.025000	0.527363	
mm_74869.1	chr8	25016229	25016429	-	1	NA	NA	NA	593	NM_001270996	11502	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	0.040000	0.383085	
mm_106307.1	chr11	118301319	118301519	-	1	NA	NA	NA	-11175	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.030000	0.442786	
mm_133749.1	chr16	94370658	94370858	+	1	NA	NA	NA	19	NM_009441	22129	Mm.213408	NM_009441	ENSMUSG00000040785	Ttc3	2610202A04Rik|AA409221|D16Ium21|D16Ium21e|TPRD|mKIAA4119	tetratricopeptide repeat domain 3	protein-coding	0.140000	0.751244	
mm_63651.1	chr7	128744878	128745078	+	1	NA	NA	NA	108	NM_001029982	207352	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	0.110000	0.661692	
mm_114512.1	chr13	72628714	72628914	+	1	NA	NA	NA	17	NM_010574	16372	Mm.28888	NM_010574	ENSMUSG00000001504	Irx2	-	Iroquois related homeobox 2 (Drosophila)	protein-coding	0.115000	0.686567	
mm_19736.1	chr2	104502481	104502681	-	1	NA	NA	NA	-8092	NM_001145824	15259	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.015000	0.492537	
mm_54487.1	chr6	35308023	35308223	-	1	NA	NA	NA	3	NM_172892	243755	Mm.23666	NM_172892	ENSMUSG00000029843	Slc13a4	9630060C05Rik|SUT-1|SUT1	solute carrier family 13 (sodium/sulfate symporters), member 4	protein-coding	0.015000	0.437811	
mm_165524.1	chr2	174346242	174346442	+	1	NA	NA	NA	16253	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.050000	0.497512	
mm_162764.1	chr10	62339234	62339434	-	1	NA	NA	NA	1087	NM_001146100	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.035000	0.497512	
mm_36961.1	chr4	109156828	109157028	-	1	NA	NA	NA	-38892	NM_001134791	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.020000	0.522388	
mm_16720.1	chr2	7301816	7302016	-	1	NA	NA	NA	94084	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.020000	0.452736	
mm_108372.1	chr12	80827619	80827819	+	1	NA	NA	NA	37187	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.005000	0.542289	
mm_97605.1	chr11	78949897	78950097	+	1	NA	NA	NA	24706	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.030000	0.601990	
mm_144026.1	chr17	90036651	90036851	-	1	NA	NA	NA	51617	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.030000	0.398010	
mm_23481.1	chr3	60489241	60489441	+	1	NA	NA	NA	-11838	NM_001253711	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.457711	60(GCATAAATAGAG,+,0.00)
mm_124421.1	chr14	118108491	118108691	-	1	NA	NA	NA	24174	NM_029578	76355	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	0.030000	0.497512	
mm_145536.1	chr18	60805855	60806055	+	1	NA	NA	NA	2106	NM_010545	16149	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	0.000000	0.467662	-71(TTTTTTAAACAC,+,0.00)
mm_5705.1	chr1	43502748	43502948	-	1	NA	NA	NA	57097	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.020000	0.407960	
mm_122278.1	chr14	34422619	34422819	-	1	NA	NA	NA	47215	NM_153127	105450	Mm.272673	NM_153127	ENSMUSG00000041445	Mmrn2	AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1	multimerin 2	protein-coding	0.005000	0.442786	
mm_165433.1	chr2	153539589	153539789	+	1	NA	NA	NA	-9718	NM_001134300	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.005000	0.532338	
mm_152982.1	chr19	29500273	29500473	-	1	NA	NA	NA	21614	NR_015567	77779	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.010000	0.393035	
mm_165222.1	chr2	49787571	49787771	+	1	NA	NA	NA	-15	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.160000	0.820896	
mm_150404.1	chr19	36834102	36834302	+	1	NA	NA	NA	-30	NM_001163635	74493	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0.135000	0.716418	
mm_107462.1	chr12	37241675	37241875	+	1	NA	NA	NA	136	NM_178767	319660	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	0.015000	0.412935	
mm_109935.1	chr12	11204195	11204395	-	1	NA	NA	NA	207	NR_131084	77442	Mm.159922	NR_131083		9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	0.020000	0.532338	
mm_51554.1	chr6	83327647	83327847	+	1	NA	NA	NA	1708	NM_145571	232157	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	0.005000	0.328358	
mm_52031.1	chr6	96113023	96113223	+	1	NA	NA	NA	-31	NM_182808	320265	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.025000	0.462687	
mm_38291.1	chr4	136890406	136890606	-	1	NA	NA	NA	2408	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.035000	0.666667	
mm_114675.1	chr13	80885573	80885773	+	1	NA	NA	NA	2251	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.110000	0.706468	
mm_110872.1	chr12	73779623	73779823	-	1	NA	NA	NA	-121601	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.015000	0.547264	-35(GGCTATAAATGT,-,0.00)
mm_57888.1	chr6	131367742	131367942	-	1	NA	NA	NA	20608	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.020000	0.527363	-79(TACCCTTAAAGG,-,0.00),-78(ACCCTTAAAGGC,-,0.00)
mm_12003.1	chr2	57265016	57265216	+	1	NA	NA	NA	26734	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.015000	0.492537	70(CTGTCTATAAGG,-,0.00)
mm_107096.1	chr12	17690708	17690908	+	1	NA	NA	NA	-6	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.110000	0.721393	
mm_100959.1	chr11	6635470	6635670	-	1	NA	NA	NA	3079	NM_011709	22373	Mm.268094	NM_011709	ENSMUSG00000000381	Wap	-	whey acidic protein	protein-coding	0.010000	0.517413	
mm_6981.1	chr1	86356358	86356558	-	1	NA	NA	NA	-131	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.005000	0.402985	-85(ACTTTTAAAGTA,+,0.00)
mm_59338.1	chr7	25463587	25463787	+	1	NA	NA	NA	13938	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.035000	0.507463	
mm_129957.1	chr15	85131868	85132068	-	1	NA	NA	NA	-11	NM_080470	140557	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	0.110000	0.606965	
mm_7638.1	chr1	127976351	127976551	-	1	NA	NA	NA	107678	NM_178690	226407	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0.015000	0.407960	
mm_79252.1	chr9	50617439	50617639	+	1	NA	NA	NA	-75	NM_212449	270156	Mm.335149	NM_212449	ENSMUSG00000059820	AU019823	Gm639	expressed sequence AU019823	protein-coding	0.065000	0.467662	
mm_171238.1	chr3	69182760	69182960	+	1	NA	NA	NA	-39559	NM_027843	71619	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	0.000000	0.442786	
mm_106025.1	chr11	116027840	116028040	-	1	NA	NA	NA	-2376	NM_001286006	217331	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0.010000	0.522388	
mm_80488.1	chr9	78369535	78369735	+	1	NA	NA	NA	-1436	NM_025274	434423	Mm.139314	NM_025274	ENSMUSG00000060461	Dppa5a	AA536857|Dppa5|Esg1|ecat2	developmental pluripotency associated 5A	protein-coding	0.010000	0.462687	
mm_80071.1	chr9	69479463	69479663	+	1	NA	NA	NA	22619	NR_037296	100526560		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0.020000	0.522388	
mm_126635.1	chr15	83563476	83563676	+	1	NA	NA	NA	3	NM_009775	12257	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	0.085000	0.676617	
mm_90148.1	chr10	118141736	118141936	+	1	NA	NA	NA	49	NM_010785	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.125000	0.706468	
mm_104273.1	chr11	89095177	89095377	-	1	NA	NA	NA	21436	NM_001033266	217071	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	0.015000	0.517413	
mm_140162.1	chr17	80224421	80224621	+	1	NA	NA	NA	32	NM_026053	67242	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem (nuclear organelle) associated protein 6	protein-coding	0.065000	0.606965	
mm_114520.1	chr13	73317722	73317922	+	1	NA	NA	NA	10660	NR_033306	407785	Mm.29897	NM_010888	ENSMUSG00000021606	Ndufs6	BC059730|IP13	NADH dehydrogenase (ubiquinone) Fe-S protein 6	protein-coding	0.045000	0.497512	
mm_86666.1	chr10	17920097	17920297	+	1	NA	NA	NA	27870	NM_001033432	380629	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.005000	0.502488	
mm_98792.1	chr11	96944082	96944282	+	1	NA	NA	NA	36	NR_003293	319371	Mm.436865	NR_003293	ENSMUSG00000078700	D030028A08Rik	-	RIKEN cDNA D030028A08 gene	ncRNA	0.060000	0.597015	
mm_49683.1	chr6	33249032	33249232	+	1	NA	NA	NA	-18	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.060000	0.577114	
mm_154737.1	chrX	10252246	10252446	+	1	NA	NA	NA	41	NM_008769	18416	Mm.2611	NM_008769	ENSMUSG00000031173	Otc	AI265390|Sf|spf	ornithine transcarbamylase	protein-coding	0.000000	0.527363	
mm_71714.1	chr8	61947310	61947510	+	1	NA	NA	NA	19323	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.025000	0.467662	
mm_38762.1	chr4	147903624	147903824	-	1	NA	NA	NA	974	NM_001285923	170731	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0.010000	0.502488	
mm_13792.1	chr2	118870289	118870489	+	1	NA	NA	NA	8389	NM_019826	56357	Mm.6635	NM_019826	ENSMUSG00000027332	Ivd	1300016K07Rik|6720455E18Rik|AI463340	isovaleryl coenzyme A dehydrogenase	protein-coding	0.025000	0.393035	
mm_37812.1	chr4	130934710	130934910	-	1	NA	NA	NA	-9575	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.030000	0.542289	
mm_14955.1	chr2	152080725	152080925	+	1	NA	NA	NA	-704	NM_001160410	545474	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.030000	0.562189	
mm_16610.1	chr2	5296108	5296308	-	1	NA	NA	NA	-83182	NR_030601	100124465		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.010000	0.467662	
mm_50212.1	chr6	42280747	42280947	+	1	NA	NA	NA	-5838	NM_013491	12723	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	0.000000	0.353234	
mm_94783.1	chr11	21953008	21953208	+	1	NA	NA	NA	48543	NM_011023	18423	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.000000	0.373134	
mm_31281.1	chr4	45848586	45848786	+	1	NA	NA	NA	-130	NM_001305421	74152	Mm.63645	NM_028788	ENSMUSG00000028327	Stra6l	1300002K09Rik|Rbpr2	STRA6-like	protein-coding	0.020000	0.572139	-17(TTTTTTATAGCT,+,0.00)
mm_51576.1	chr6	83758756	83758956	+	1	NA	NA	NA	3652	NR_105027	67934	Mm.126190	NR_105027	ENSMUSG00000099354	1700124L16Rik	-	RIKEN cDNA 1700124L16 gene	ncRNA	0.015000	0.393035	
mm_36303.1	chr4	68954162	68954362	-	1	NA	NA	NA	135	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.050000	0.626866	
mm_65551.1	chr7	27132420	27132620	-	1	NA	NA	NA	12565	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.035000	0.472637	
mm_35558.1	chr4	41569378	41569578	-	1	NA	NA	NA	49	NM_001159583	71901	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	0.105000	0.691542	
mm_164210.1	chr15	82298837	82299037	+	1	NA	NA	NA	-47	NM_029066	74716	Mm.159315	NM_029066	ENSMUSG00000022455	Wbp2nl	4930521I23Rik|PAWP	WBP2 N-terminal like	protein-coding	0.050000	0.621891	
mm_8813.1	chr1	161969075	161969275	-	1	NA	NA	NA	-13	NM_001039045	67292	Mm.45106	NM_026078	ENSMUSG00000026698	Pigc	3110030E07Rik|AW212108	phosphatidylinositol glycan anchor biosynthesis, class C	protein-coding	0.080000	0.631841	-94(CTCTTTAGGGGG,+,0.00)
mm_59496.1	chr7	27535715	27535915	+	1	NA	NA	NA	12554	NM_001033315	233020	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.025000	0.597015	
mm_14509.1	chr2	132263196	132263396	+	1	NA	NA	NA	148	NM_138651	110911	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.125000	0.776119	
mm_24001.1	chr3	86863118	86863318	+	1	NA	NA	NA	57666	NM_001195496	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.010000	0.592040	-36(CACTATAAAAGG,-,0.00)
mm_132046.1	chr16	29150075	29150275	+	1	NA	NA	NA	-59520	NM_013751	27281	Mm.103650	NM_013751	ENSMUSG00000022525	Hrasls	2810012B06Rik|A-C1|HRSL1|Hrasrs	HRAS-like suppressor	protein-coding	0.005000	0.333333	
mm_123811.1	chr14	70522648	70522848	-	1	NA	NA	NA	1333	NM_011359	20389	Mm.24040	NM_011359	ENSMUSG00000022097	Sftpc	Bricd6|SP-C|SP5|SPC|Sftp-2|Sftp2|pro-SpC	surfactant associated protein C	protein-coding	0.035000	0.592040	
mm_113003.1	chr13	21811663	21811863	+	1	NA	NA	NA	17	NM_001195421	100041230	Mm.442307	NM_001195421	ENSMUSG00000069306	Hist1h4m	Gm11275|OTTMUSG00000000446	histone cluster 1, H4m	protein-coding	0.065000	0.567164	-52(CCCTATAAGAGG,-,0.00)
mm_20418.1	chr2	129300843	129301043	-	1	NA	NA	NA	3573	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.020000	0.457711	
mm_56583.1	chr6	106794504	106794704	-	1	NA	NA	NA	5483	NM_021449	58799	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.020000	0.482587	
mm_36401.1	chr4	77826153	77826353	-	1	NA	NA	NA	385642	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.363184	
mm_299.1	chr1	23291616	23291816	+	1	NA	NA	NA	15	NR_029717	723964		NR_029717	ENSMUSG00000065567	Mir30c-2	Mirn30c-2|mir-30c-2	microRNA 30c-2	ncRNA	0.020000	0.462687	
mm_155669.1	chrX	90744585	90744785	+	1	NA	NA	NA	-147457	NM_001101450	212952	Mm.477436	NM_001101450	ENSMUSG00000091497	Gm44	-	predicted gene 44	protein-coding	0.000000	0.457711	
mm_153107.1	chr19	32906095	32906295	-	1	NA	NA	NA	148618	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.010000	0.457711	
mm_169683.1	chr15	72480171	72480371	+	1	NA	NA	NA	66008	NM_001033876	223604	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding	0.000000	0.517413	
mm_107430.1	chr12	35712847	35713047	+	1	NA	NA	NA	-17829	NR_045050	71581	Mm.100110	NR_045050		9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	0.015000	0.492537	
mm_171964.1	chr5	85263768	85263968	+	1	NA	NA	NA	801715	NM_001345902	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0.030000	0.487562	
mm_96650.1	chr11	69363926	69364126	+	1	NA	NA	NA	5400	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.030000	0.517413	
mm_172415.1	chr7	23534750	23534950	-	1	NA	NA	NA	-5870	NM_001166842	100043101	Mm.480247	NM_001166842	ENSMUSG00000074291	Vmn1r168	ENSMUSG00000074291|Gm10659	vomeronasal 1 receptor 168	protein-coding	0.055000	0.487562	
mm_166399.1	chr5	135957791	135957991	+	1	NA	NA	NA	16585	NM_001160366	109267	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0.050000	0.557214	
mm_149964.1	chr19	28995108	28995308	+	1	NA	NA	NA	4856	NM_025950	67072	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	0.025000	0.517413	
mm_134463.1	chr16	18426357	18426557	-	1	NA	NA	NA	40	NM_013711	26462	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0.140000	0.746269	
mm_2028.1	chr1	87183213	87183413	+	1	NA	NA	NA	-1	NM_027084	69453	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	0.020000	0.572139	
mm_51571.1	chr6	83742924	83743124	+	1	NA	NA	NA	7	NM_134157	110935	Mm.220823	NM_134157	ENSMUSG00000006269	Atp6v1b1	AW208839|Atp6b1|D630003L15|D630030L16Rik|D630039P21Rik|Vpp-3|Vpp3	ATPase, H+ transporting, lysosomal V1 subunit B1	protein-coding	0.015000	0.582090	
mm_88624.1	chr10	79879563	79879763	+	1	NA	NA	NA	-4	NM_011178	19152	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	0.010000	0.621891	-31(GGCTATAAGAGG,-,0.00)
mm_154905.1	chrX	21068330	21068530	+	1	NA	NA	NA	-58	NM_001085393	278203		NM_001085393	ENSMUSG00000037167	Spaca5	Gm718|Lyze	sperm acrosome associated 5	protein-coding	0.005000	0.447761	-32(GCTCATAAAGCC,+,0.00)
mm_43037.1	chr5	123998598	123998798	+	1	NA	NA	NA	1846	NR_105999	102465625		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.025000	0.597015	
mm_103812.1	chr11	83002485	83002685	-	1	NA	NA	NA	-10755	NM_172796	237886	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.020000	0.552239	
mm_39403.1	chr5	14514840	14515040	+	1	NA	NA	NA	22	NM_001110796	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.145000	0.756219	
mm_115188.1	chr13	108498553	108498753	+	1	NA	NA	NA	-155524	NM_011056	238871	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	0.015000	0.477612	
mm_4651.1	chr1	180333898	180334098	+	1	NA	NA	NA	-3449	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.010000	0.592040	-44(CTCCTTAAAAGA,-,0.00)
mm_167627.1	chr9	61156828	61157028	+	1	NA	NA	NA	18413	NR_045705	619328	Mm.325722	NR_045705	ENSMUSG00000110998	I730028E13Rik	-	RIKEN cDNA I730028E13 gene	ncRNA	0.010000	0.502488	
mm_68320.1	chr7	106502031	106502231	-	1	NA	NA	NA	-61058	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.258706	
mm_145141.1	chr18	45559465	45559665	+	1	NA	NA	NA	-589	NM_080465	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.080000	0.656716	
mm_7166.1	chr1	92048877	92049077	-	1	NA	NA	NA	131364	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.005000	0.517413	
mm_117946.1	chr13	99435045	99435245	-	1	NA	NA	NA	-22319	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.502488	
mm_79788.1	chr9	63690692	63690892	+	1	NA	NA	NA	67202	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.000000	0.452736	
mm_84582.1	chr9	69491682	69491882	-	1	NA	NA	NA	34838	NR_037296	100526560		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0.030000	0.462687	
mm_41942.1	chr5	105731643	105731843	+	1	NA	NA	NA	30933	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.025000	0.527363	
mm_46009.1	chr5	90786517	90786717	-	1	NA	NA	NA	516	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.020000	0.517413	
mm_123083.1	chr14	55745483	55745683	-	1	NA	NA	NA	101	NM_026819	52585	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.060000	0.587065	
mm_587.1	chr1	39478758	39478958	+	1	NA	NA	NA	-111	NM_018775	54610	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.080000	0.696517	
mm_163765.1	chr13	120016935	120017135	+	1	NA	NA	NA	35169	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.020000	0.388060	
mm_132139.1	chr16	31940737	31940937	+	1	NA	NA	NA	6986	NM_172822	239827	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.005000	0.497512	
mm_136370.1	chr16	92821967	92822167	-	1	NA	NA	NA	4007	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.025000	0.482587	
mm_80768.1	chr9	95559583	95559783	+	1	NA	NA	NA	-134	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.205000	0.835821	
mm_131791.1	chr16	22898830	22899030	+	1	NA	NA	NA	-4544	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.045000	0.606965	
mm_164280.1	chr15	102315319	102315519	+	1	NA	NA	NA	-10697	NM_027044	56612	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	0.015000	0.606965	
mm_117826.1	chr13	98206043	98206243	-	1	NA	NA	NA	22	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0.110000	0.761194	
mm_73629.1	chr8	110721333	110721533	+	1	NA	NA	NA	-43	NM_198625	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.150000	0.776119	
mm_168186.1	chr10	60277548	60277748	+	1	NA	NA	NA	20	NM_001146121	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.105000	0.656716	
mm_139099.1	chr17	46919753	46919953	+	1	NA	NA	NA	9368	NM_008938	19133	Mm.291370	NM_008938	ENSMUSG00000023978	Prph2	AOFMD|AVMD|Nmf193|PRPH|RP7|Rd-2|Rd2|Rds|Tspan22|rds	peripherin 2	protein-coding	0.055000	0.606965	
mm_161766.1	chr17	36268994	36269194	-	1	NA	NA	NA	2339	NM_178281	79263	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0.005000	0.482587	
mm_73970.1	chr8	120488731	120488931	+	1	NA	NA	NA	-35	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.070000	0.547264	
mm_139776.1	chr17	65642225	65642425	+	1	NA	NA	NA	-121	NM_001146002	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.015000	0.482587	-31(GCTTTACAAGGC,+,0.00)
mm_123770.1	chr14	70212313	70212513	-	1	NA	NA	NA	-4742	NM_011366	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.005000	0.487562	
mm_55012.1	chr6	48840468	48840668	-	1	NA	NA	NA	420	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.005000	0.547264	
mm_45869.1	chr5	88008016	88008216	-	1	NA	NA	NA	5591	NM_011422	20599	Mm.261199	NM_011422	ENSMUSG00000029280	Smr3a	AA589601|MSG1|MSG3|Smr1|Smr3	submaxillary gland androgen regulated protein 3A	protein-coding	0.005000	0.577114	
mm_7911.1	chr1	133689967	133690167	-	1	NA	NA	NA	41	NM_001159649	240754	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	0.030000	0.557214	
mm_160290.1	chr7	127195529	127195729	-	1	NA	NA	NA	448	NM_001285907	70233	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0.065000	0.606965	
mm_8217.1	chr1	138157528	138157728	-	1	NA	NA	NA	17498	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.437811	-60(CCTTTTAGGAGG,+,0.00)
mm_115913.1	chr13	23465766	23465966	-	1	NA	NA	NA	35	NM_013483	12231	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0.020000	0.542289	
mm_144320.1	chr18	12734711	12734911	+	1	NA	NA	NA	-6544	NM_001042419	71132	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.020000	0.467662	
mm_129016.1	chr15	74926674	74926874	-	1	NA	NA	NA	-28277	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.010000	0.532338	
mm_164853.1	chr18	47901592	47901792	+	1	NA	NA	NA	-21149	NR_045404	414127	Mm.450768	NR_045404		G630055G22Rik	-	RIKEN cDNA G630055G22 gene	ncRNA	0.015000	0.457711	
mm_40347.1	chr5	45669793	45669993	+	1	NA	NA	NA	-32	NM_019438	54392	Mm.32012	NM_019438	ENSMUSG00000015880	Ncapg	5730507H05Rik|Hcapg|MFT.M05.13	non-SMC condensin I complex, subunit G	protein-coding	0.100000	0.636816	
mm_27291.1	chr3	41742410	41742610	-	1	NA	NA	NA	4	NM_001081411	67161	Mm.331001	NM_026008	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik	sodium channel and clathrin linker 1	protein-coding	0.135000	0.696517	
mm_45143.1	chr5	49131928	49132128	-	1	NA	NA	NA	153631	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.010000	0.348259	-55(CCTTTAATAGTC,+,0.00)
mm_135293.1	chr16	38550104	38550304	-	1	NA	NA	NA	52	NM_172380	224143	Mm.284366	NM_172380	ENSMUSG00000034064	Poglut1	9630046K23Rik|Clp46|Ktelc1|Rumi	protein O-glucosyltransferase 1	protein-coding	0.105000	0.706468	
mm_5209.1	chr1	13587728	13587928	-	1	NA	NA	NA	2082	NM_028173	72265	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	0.000000	0.373134	
mm_10208.1	chr2	5229958	5230158	+	1	NA	NA	NA	92282	NM_028804	74186	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	0.010000	0.512438	
mm_164109.1	chr15	27855611	27855811	+	1	NA	NA	NA	170137	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.010000	0.522388	86(TCCTTTTTAAGG,-,0.00),88(CTTTTTAAGGAA,+,0.00)
mm_157745.1	chrX	73401602	73401802	-	1	NA	NA	NA	-9394	NM_009566	22754	Mm.5060	NM_009566	ENSMUSG00000031374	Zfp92	-	zinc finger protein 92	protein-coding	0.030000	0.507463	
mm_73349.1	chr8	105427528	105427728	+	1	NA	NA	NA	-12	NM_001033371	270091	Mm.212709	NM_001033371	ENSMUSG00000054320	Lrrc36	BC036564	leucine rich repeat containing 36	protein-coding	0.020000	0.472637	
mm_146378.1	chr18	82585032	82585232	+	1	NA	NA	NA	30624	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.035000	0.557214	
mm_121332.1	chr14	115040212	115040412	+	1	NA	NA	NA	-3359	NR_029785	723905		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0.065000	0.611940	
mm_48132.1	chr5	137149879	137150079	-	1	NA	NA	NA	-33772	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.010000	0.502488	
mm_164710.1	chr17	53145491	53145691	+	1	NA	NA	NA	317730	NM_172497	211482	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	0.000000	0.323383	
mm_46596.1	chr5	107787157	107787357	-	1	NA	NA	NA	-42905	NM_001276397	73318	Mm.441500	NM_028502	ENSMUSG00000063447	Ube2d2b	1700013N18Rik	ubiquitin-conjugating enzyme E2D 2B	protein-coding	0.005000	0.308458	
mm_14816.1	chr2	146222002	146222202	+	1	NA	NA	NA	105	NM_016889	53626	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	0.120000	0.741294	-33(CCCGTTAAAAGG,-,0.00)
mm_146267.1	chr18	77870186	77870386	+	1	NA	NA	NA	-68181	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.035000	0.542289	
mm_111743.1	chr12	103897122	103897322	-	1	NA	NA	NA	7728	NM_009245	20702	Mm.439692	NM_009245	ENSMUSG00000079015	Serpina1c	Pi3|Pi6|Skalp|Spi1-3|Spi1-6|Wap3	serine (or cysteine) peptidase inhibitor, clade A, member 1C	protein-coding	0.030000	0.557214	
mm_52432.1	chr6	113483501	113483701	+	1	NA	NA	NA	32	NM_133930	171508	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811	cysteine-rich with EGF-like domains 1	protein-coding	0.055000	0.527363	
mm_54250.1	chr6	28261825	28262025	-	1	NA	NA	NA	-324	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.105000	0.711443	
mm_45152.1	chr5	49323049	49323249	-	1	NA	NA	NA	-37490	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.010000	0.313433	
mm_110635.1	chr12	57546054	57546254	-	1	NA	NA	NA	-33	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.120000	0.726368	
mm_69038.1	chr7	126799077	126799277	-	1	NA	NA	NA	1	NM_001177307	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.085000	0.626866	-39(GCCTTTAAATGT,-,0.00)
mm_70392.1	chr8	11007348	11007548	+	1	NA	NA	NA	-402	NR_046017	619321	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0.115000	0.701493	
mm_143330.1	chr17	66449537	66449737	-	1	NA	NA	NA	113	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.130000	0.721393	
mm_114161.1	chr13	55413088	55413288	+	1	NA	NA	NA	2044	NM_029303	75477	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	0.040000	0.597015	
mm_83810.1	chr9	53591930	53592130	-	1	NA	NA	NA	18320	NM_144784	110446	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	0.015000	0.427861	
mm_22432.1	chr2	181671534	181671734	-	1	NA	NA	NA	6	NM_009236	20672	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	0.095000	0.681592	
mm_44010.1	chr5	147077434	147077634	+	1	NA	NA	NA	188	NM_009087	20018	Mm.317557	NM_009087	ENSMUSG00000029642	Polr1d	1110003G10Rik|AC19|RPA16|Rpo1-3	polymerase (RNA) I polypeptide D	protein-coding	0.110000	0.696517	
mm_23468.1	chr3	60475934	60476134	+	1	NA	NA	NA	3204	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.323383	
mm_110211.1	chr12	28582425	28582625	-	1	NA	NA	NA	-42	NM_053156	94041	Mm.84927	NM_053156	ENSMUSG00000020636	Allc	1700012B22Rik|Alc	allantoicase	protein-coding	0.015000	0.462687	
mm_148611.1	chr19	5366304	5366504	+	1	NA	NA	NA	-41	NM_001038231	23825	Mm.358649	NM_011793	ENSMUSG00000024844	Banf1	Baf|Bcrp1|L2bp1/Baf	barrier to autointegration factor 1	protein-coding	0.135000	0.781095	
mm_63670.1	chr7	130002107	130002307	+	1	NA	NA	NA	40042	NR_046077	100043150	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0.025000	0.398010	
mm_83374.1	chr9	44526310	44526510	-	1	NA	NA	NA	11	NM_007551	12145	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	0.020000	0.537313	
mm_45373.1	chr5	66048421	66048621	-	1	NA	NA	NA	-44236	NR_027961	231253	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.000000	0.258706	
mm_33925.1	chr4	136653138	136653338	+	1	NA	NA	NA	30617	NM_001243262	242707	Mm.448979	NM_001243262	ENSMUSG00000070683	Lactbl1	-	lactamase, beta-like 1	protein-coding	0.015000	0.532338	
mm_50083.1	chr6	41523642	41523842	+	1	NA	NA	NA	1966	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.432836	-89(CTTTATATACCA,+,0.00)
mm_5850.1	chr1	52992584	52992784	-	1	NA	NA	NA	-39844	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.010000	0.432836	
mm_11129.1	chr2	28230008	28230208	+	1	NA	NA	NA	24419	NM_019498	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.030000	0.557214	
mm_90350.1	chr10	127164679	127164879	+	1	NA	NA	NA	-377	NR_045166	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.035000	0.552239	
mm_72370.1	chr8	80950009	80950209	+	1	NA	NA	NA	64797	NM_027554	74841	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	0.000000	0.348259	-53(GCTTTAAAATCC,+,0.00)
mm_42698.1	chr5	119881244	119881444	+	1	NA	NA	NA	46681	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.005000	0.472637	
mm_144378.1	chr18	20603258	20603458	+	1	NA	NA	NA	45284	NM_007883	13511	Mm.345891	NM_007883	ENSMUSG00000044393	Dsg2	AA408168|D18Ertd293e	desmoglein 2	protein-coding	0.010000	0.437811	
mm_153626.1	chr19	44012335	44012535	-	1	NA	NA	NA	16812	NM_001001446	226143	Mm.329866	NM_001001446	ENSMUSG00000025197	Cyp2c44	AW107714|BC034834|b2b386Clo	cytochrome P450, family 2, subfamily c, polypeptide 44	protein-coding	0.020000	0.497512	
mm_129118.1	chr15	76091524	76091724	-	1	NA	NA	NA	-1611	NM_144847	223649	Mm.101946	NM_144847	ENSMUSG00000075590	Nrbp2	BC011468	nuclear receptor binding protein 2	protein-coding	0.120000	0.781095	
mm_42802.1	chr5	121714078	121714278	+	1	NA	NA	NA	2569	NM_009125	20239	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.010000	0.393035	
mm_123144.1	chr14	57057478	57057678	-	1	NA	NA	NA	145	NM_001271623	14611	Mm.57207	NM_016975	ENSMUSG00000048582	Gja3	Cnx46|Cx43|Cx46|Gja-3	gap junction protein, alpha 3	protein-coding	0.105000	0.716418	
mm_159823.1	chr5	123482007	123482207	-	1	NA	NA	NA	-6	NM_029594	76399	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.035000	0.547264	
mm_18190.1	chr2	45113128	45113328	-	1	NA	NA	NA	51	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.035000	0.527363	
mm_156688.1	chrX	159414484	159414684	+	1	NA	NA	NA	12	NM_001313751	78283	Mm.160079	NM_001081124	ENSMUSG00000041020	Map7d2	1600028E09Rik|2900002G04Rik|5330432J06Rik|C030036K04Rik|Mtap7d2	MAP7 domain containing 2	protein-coding	0.165000	0.791045	
mm_18521.1	chr2	63080007	63080207	-	1	NA	NA	NA	104180	NM_133207	170738	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.000000	0.417910	-52(CCTTTTCTAGCA,+,0.00)
mm_161405.1	chr14	122983314	122983514	-	1	NA	NA	NA	-153	NM_028651	70551	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	0.115000	0.661692	
mm_170034.1	chr17	22739740	22739940	-	1	NA	NA	NA	77907	NR_030709	100042679	Mm.484007	NR_030709		Gm16386	EG545191|ENSMUSG00000073442|Gm21017	zinc finger protein 946 pseudogene	pseudo	0.050000	0.537313	
mm_120840.1	chr14	75187188	75187388	+	1	NA	NA	NA	50863	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.020000	0.467662	
mm_63561.1	chr7	128107589	128107789	+	1	NA	NA	NA	-21879	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.020000	0.582090	
mm_11995.1	chr2	55597255	55597455	+	1	NA	NA	NA	161385	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.005000	0.348259	
mm_152565.1	chr19	11587736	11587936	-	1	NA	NA	NA	16968	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.010000	0.378109	
mm_171705.1	chr4	74643681	74643881	-	1	NA	NA	NA	391902	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.060000	0.621891	
mm_65291.1	chr7	24450531	24450731	-	1	NA	NA	NA	-4949	NM_199013	210145	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.020000	0.542289	
mm_152227.1	chr19	8707766	8707966	-	1	NA	NA	NA	6031	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.045000	0.587065	
mm_534.1	chr1	37997860	37998060	+	1	NA	NA	NA	-50	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.125000	0.671642	
mm_101851.1	chr11	48866147	48866347	-	1	NA	NA	NA	5099	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding	0.020000	0.447761	-5(CCTTAAAGACCC,+,0.00),4(CCCTTTATGGCA,+,0.00)
mm_73557.1	chr8	108961067	108961267	+	1	NA	NA	NA	24307	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.010000	0.393035	
mm_6458.1	chr1	74016672	74016872	-	1	NA	NA	NA	107675	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.020000	0.547264	
mm_77171.1	chr8	111690221	111690421	-	1	NA	NA	NA	-647	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.000000	0.532338	
mm_61437.1	chr7	74529390	74529590	+	1	NA	NA	NA	25290	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.010000	0.487562	-33(GCTTTTAAATAA,+,0.00)
mm_164668.1	chr17	44736034	44736234	-	1	NA	NA	NA	42	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.150000	0.756219	
mm_62029.1	chr7	91672392	91672592	+	1	NA	NA	NA	-389902	NM_001243046	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.015000	0.492537	
mm_29364.1	chr3	108686397	108686597	-	1	NA	NA	NA	32507	NM_001177770	229725	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	0.005000	0.343284	72(GGATTTTTAAGC,-,0.00)
mm_4389.1	chr1	172340821	172341021	+	1	NA	NA	NA	-289	NM_001039484	16513	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	0.065000	0.577114	
mm_171776.1	chr5	109844902	109845102	-	1	NA	NA	NA	-10860	NR_027964	667213	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213|ENSMUSG00000072761	zinc finger protein pseudogene	pseudo	0.035000	0.562189	
mm_114833.1	chr13	92425825	92426025	+	1	NA	NA	NA	-44	NM_175455	218440	Mm.213623	NM_175455	ENSMUSG00000045034	Ankrd34b	6430502M16Rik|DP58	ankyrin repeat domain 34B	protein-coding	0.130000	0.761194	
mm_131724.1	chr16	21692959	21693159	+	1	NA	NA	NA	1606	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.035000	0.452736	
mm_128732.1	chr15	64156162	64156362	-	1	NA	NA	NA	-95814	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.005000	0.358209	
mm_84013.1	chr9	57645517	57645717	-	1	NA	NA	NA	36	NM_007783	12988	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.130000	0.761194	
mm_79762.1	chr9	62677738	62677938	+	1	NA	NA	NA	-17	NM_176922	319480	Mm.34883	NM_176922	ENSMUSG00000032243	Itga11	4732459H24Rik	integrin alpha 11	protein-coding	0.100000	0.721393	
mm_73254.1	chr8	104340217	104340417	+	1	NA	NA	NA	-277	NM_024217	68119	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.025000	0.562189	
mm_101853.1	chr11	48866896	48867096	-	1	NA	NA	NA	4350	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding	0.020000	0.522388	
mm_43470.1	chr5	136693575	136693775	+	1	NA	NA	NA	-1	NM_001303021	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.030000	0.557214	
mm_24191.1	chr3	88607384	88607584	+	1	NA	NA	NA	-8723	NM_001198911	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.035000	0.537313	
mm_139278.1	chr17	48247671	48247871	+	1	NA	NA	NA	42	NM_021407	58218	Mm.302438	NM_021407	ENSMUSG00000041754	Trem3	BB134760	triggering receptor expressed on myeloid cells 3	protein-coding	0.015000	0.542289	
mm_148920.1	chr19	6976361	6976561	+	1	NA	NA	NA	1413	NM_008889	18938	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.010000	0.592040	
mm_75804.1	chr8	70188772	70188972	-	1	NA	NA	NA	16464	NR_122028	234371	Mm.23488	NM_145597	ENSMUSG00000002342	Tmem161a	AI428876|BB161850|BC021367	transmembrane protein 161A	protein-coding	0.030000	0.597015	
mm_70947.1	chr8	26724389	26724589	+	1	NA	NA	NA	99934	NR_045904	72316	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.005000	0.447761	
mm_31273.1	chr4	45409010	45409210	+	1	NA	NA	NA	-344	NM_001009949	230125	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0.035000	0.512438	
mm_58875.1	chr7	16986874	16987074	+	1	NA	NA	NA	-7614	NM_001101535	434130	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	ENSMUSG00000041117	coiled-coil domain containing 8	protein-coding	0.010000	0.507463	
mm_50843.1	chr6	54817418	54817618	+	1	NA	NA	NA	602	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.065000	0.587065	
mm_165264.1	chr2	74673814	74674014	+	1	NA	NA	NA	-1099	NM_008274	15432	Mm.57124	NM_008274	ENSMUSG00000001823	Hoxd12	Hox-4.7|Hox-5.6	homeobox D12	protein-coding	0.055000	0.616915	
mm_86061.1	chr9	114640030	114640230	-	1	NA	NA	NA	70	NM_153585	78893	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	0.090000	0.651741	
mm_43421.1	chr5	136039000	136039200	+	1	NA	NA	NA	604	NM_175309	100647	Mm.3089	NM_175309	ENSMUSG00000042985	Upk3b	AI447729|AI957187|P35|PMS2L14|UpIIIb	uroplakin 3B	protein-coding	0.030000	0.527363	
mm_125995.1	chr15	76380374	76380574	+	1	NA	NA	NA	-39	NM_175457	223658	Mm.123240	NM_175457	ENSMUSG00000022558	Mroh1	D330001F17Rik|Heatr7a	maestro heat-like repeat family member 1	protein-coding	0.105000	0.701493	
mm_146607.1	chr18	9619371	9619571	-	1	NA	NA	NA	-2	NM_007593	26369	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	0.065000	0.616915	
mm_114078.1	chr13	54517406	54517606	+	1	NA	NA	NA	13701	NM_176987	319719	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	0.005000	0.278607	
mm_158476.1	chrX	141473963	141474163	-	1	NA	NA	NA	13	NM_053185	94216	Mm.155586	NM_053185	ENSMUSG00000031273	Col4a6	BB116301	collagen, type IV, alpha 6	protein-coding	0.025000	0.527363	
mm_54021.1	chr6	8759282	8759482	-	1	NA	NA	NA	-924	NM_001252266	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.000000	0.412935	
mm_111845.1	chr12	107938660	107938860	-	1	NA	NA	NA	64654	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.005000	0.407960	
mm_5923.1	chr1	55215452	55215652	-	1	NA	NA	NA	11230	NM_028713	74013	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	0.025000	0.512438	
mm_53950.1	chr6	5256152	5256352	-	1	NA	NA	NA	-19	NM_173006	269823	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	0.030000	0.606965	68(GCCTTAATAGGG,+,0.00)
mm_93993.1	chr10	127531428	127531628	-	1	NA	NA	NA	3031	NM_183297	104080	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.010000	0.542289	
mm_104923.1	chr11	99858649	99858849	-	1	NA	NA	NA	832	NM_001205030	432600	Mm.60039	NM_001205030	ENSMUSG00000069717	Gm11568	OTTMUSG00000002207	predicted gene 11568	protein-coding	0.010000	0.402985	
mm_12172.1	chr2	62664209	62664409	+	1	NA	NA	NA	-18	NM_145523	227960	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0.090000	0.686567	
mm_102770.1	chr11	68270765	68270965	-	1	NA	NA	NA	49973	NR_105833	102465219		NR_105833	ENSMUSG00000099174	Mir6406	Gm27981|mmu-mir-6406	microRNA 6406	ncRNA	0.025000	0.517413	
mm_73965.1	chr8	120488353	120488553	+	1	NA	NA	NA	-413	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.045000	0.547264	
mm_108408.1	chr12	81709021	81709221	+	1	NA	NA	NA	72049	NM_177395	338372	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.015000	0.457711	
mm_43663.1	chr5	138754466	138754666	+	1	NA	NA	NA	-515	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.125000	0.726368	
mm_167144.1	chr7	128205683	128205883	+	1	NA	NA	NA	583	NM_009943	12862	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	0.040000	0.587065	
mm_17133.1	chr2	24935082	24935282	-	1	NA	NA	NA	99	NR_027876	215705	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	0.100000	0.701493	
mm_77959.1	chr9	7691995	7692195	+	1	NA	NA	NA	5	NM_010810	17393	Mm.4825	NM_010810	ENSMUSG00000018623	Mmp7	MAT|MMP-7	matrix metallopeptidase 7	protein-coding	0.005000	0.477612	
mm_4842.1	chr1	186960335	186960535	+	1	NA	NA	NA	-6981	NM_033077	110957	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding	0.030000	0.447761	
mm_116402.1	chr13	41423135	41423335	-	1	NA	NA	NA	64125	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.005000	0.452736	21(CCTCTTATAACC,+,0.00)
mm_28749.1	chr3	95818674	95818874	-	1	NA	NA	NA	179	NM_001081293	75137	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	0.120000	0.726368	
mm_5406.1	chr1	33757869	33758069	-	1	NA	NA	NA	-219	NM_145392	213539	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	0.050000	0.636816	
mm_118792.1	chr14	24118930	24119130	+	1	NA	NA	NA	30153	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.000000	0.388060	
mm_140550.1	chr17	7169633	7169833	-	1	NA	NA	NA	-382	NM_011299	20112	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.055000	0.572139	
mm_4960.1	chr1	191266957	191267157	+	1	NA	NA	NA	51061	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.025000	0.527363	
mm_2126.1	chr1	87908992	87909192	+	1	NA	NA	NA	-54793	NR_136921	100503175	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.000000	0.502488	
mm_144114.1	chr18	4366829	4367029	+	1	NA	NA	NA	-8663	NM_026157	67440	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0.010000	0.417910	
mm_91983.1	chr10	61783868	61784068	-	1	NA	NA	NA	-104	NM_207000	404634	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	0.065000	0.646766	
mm_46887.1	chr5	113972869	113973069	-	1	NA	NA	NA	20788	NM_198109	231637	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot homolog 1 (Drosophila)	protein-coding	0.020000	0.492537	
mm_143903.1	chr17	84859923	84860123	-	1	NA	NA	NA	-69237	NM_028233	72416	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0.015000	0.582090	
mm_110362.1	chr12	40038116	40038316	-	1	NA	NA	NA	-229	NM_001039515	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.090000	0.686567	
mm_127122.1	chr15	98108359	98108559	+	1	NA	NA	NA	-12	NM_001163487	18642	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	0.040000	0.631841	
mm_125284.1	chr15	36725174	36725374	+	1	NA	NA	NA	65658	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.045000	0.532338	-35(CTCCTTAAAAGG,-,0.00),-34(TCCTTAAAAGGG,+,0.00),-33(CCTTAAAAGGGA,+,0.00)
mm_80721.1	chr9	92275814	92276014	+	1	NA	NA	NA	312	NM_001195084	18828	Mm.10306	NM_008880	ENSMUSG00000032372	Plscr2	-	phospholipid scramblase 2	protein-coding	0.010000	0.477612	
mm_162826.1	chr10	81301955	81302155	-	1	NA	NA	NA	9092	NM_001146687	18717	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.045000	0.577114	
mm_54436.1	chr6	34317371	34317571	-	1	NA	NA	NA	18	NM_009658	11677	Mm.451	NM_009658	ENSMUSG00000001642	Akr1b3	ALR2|AR|Ahr-1|Ahr1|Akr1b1|Aldor1|Aldr1	aldo-keto reductase family 1, member B3 (aldose reductase)	protein-coding	0.090000	0.592040	-5(GGCTATTTAAAG,-,0.00)
mm_14780.1	chr2	145850933	145851133	+	1	NA	NA	NA	-52208	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.020000	0.537313	
mm_118190.1	chr13	107767872	107768072	-	1	NA	NA	NA	-6885	NR_029759	723929		NR_029759	ENSMUSG00000065425	Mir325	Mirn325|mmu-mir-325	microRNA 325	ncRNA	0.010000	0.447761	
mm_158833.1	chrX	168349143	168349343	-	1	NA	NA	NA	-226246	NM_001290427	333605	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	0.000000	0.417910	
mm_119921.1	chr14	54961964	54962164	+	1	NA	NA	NA	4543	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.015000	0.532338	
mm_65178.1	chr7	19692810	19693010	-	1	NA	NA	NA	-251	NM_007469	11812	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0.010000	0.527363	
mm_161729.1	chr17	29183920	29184120	-	1	NA	NA	NA	48964	NM_001002786	442827	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	0.025000	0.572139	
mm_84093.1	chr9	58240960	58241160	-	1	NA	NA	NA	8726	NM_178087	18854	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	0.000000	0.447761	
mm_32550.1	chr4	109394126	109394326	+	1	NA	NA	NA	12031	NR_131195	102635290	Mm.427859	NR_131195		Ttc39aos1	Gm12750|OTTMUSG00000008290|lincRNA-EPS	Ttc39a opposite strand RNA 1	ncRNA	0.050000	0.661692	
mm_140145.1	chr17	80061455	80061655	+	1	NA	NA	NA	713	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.135000	0.711443	
mm_42908.1	chr5	122513909	122514109	+	1	NA	NA	NA	-11784	NR_027838	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.045000	0.651741	
mm_160793.1	chr11	3356084	3356284	-	1	NA	NA	NA	-43	NM_001034030	16886	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.005000	0.512438	
mm_62415.1	chr7	101316955	101317155	+	1	NA	NA	NA	-4264	NM_019990	56018	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	0.005000	0.532338	
mm_57766.1	chr6	129234663	129234863	-	1	NA	NA	NA	3282	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.005000	0.487562	
mm_162024.1	chr19	46317647	46317847	-	1	NA	NA	NA	9119	NM_001347454	73728	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.135000	0.696517	
mm_173054.1	chrX	124283197	124283397	-	1	NA	NA	NA	-147387	NM_001100616	100038941	Mm.388852	NM_001100616	ENSMUSG00000072049	Vmn2r121	EG625699	vomeronasal 2, receptor 121	protein-coding	0.030000	0.562189	
mm_164678.1	chr17	46680679	46680879	-	1	NA	NA	NA	-4	NM_001277311	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.100000	0.691542	
mm_150342.1	chr19	34607430	34607630	+	1	NA	NA	NA	-427	NM_001005858	667370	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	0.005000	0.398010	
mm_153339.1	chr19	38358378	38358578	-	1	NA	NA	NA	-37502	NM_175507	240660	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	0.020000	0.383085	
mm_143659.1	chr17	79713999	79714199	-	1	NA	NA	NA	942	NM_009994	13078	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0.085000	0.631841	
mm_167250.1	chr8	24725645	24725845	-	1	NA	NA	NA	107	NM_009619	11497	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	0.035000	0.592040	
mm_45604.1	chr5	75044382	75044582	-	1	NA	NA	NA	159	NM_028850	74277	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	0.155000	0.756219	
mm_149722.1	chr19	21778270	21778470	+	1	NA	NA	NA	30	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.120000	0.731343	
mm_161429.1	chr15	51865383	51865583	-	1	NA	NA	NA	-22	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.085000	0.666667	
mm_143651.1	chr17	79451620	79451820	-	1	NA	NA	NA	26165	NR_033463	74622	Mm.311921	NR_033463		4930429F11Rik	-	RIKEN cDNA 4930429F11 gene	ncRNA	0.015000	0.497512	
mm_127981.1	chr15	12491751	12491951	-	1	NA	NA	NA	100705	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.010000	0.417910	-7(TTTTTTATAGCC,+,0.00)
mm_23502.1	chr3	60528190	60528390	+	1	NA	NA	NA	27111	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.025000	0.432836	
mm_118993.1	chr14	28505666	28505866	+	1	NA	NA	NA	293	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.100000	0.582090	
mm_132254.1	chr16	32751624	32751824	+	1	NA	NA	NA	15838	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.005000	0.452736	
mm_16747.1	chr2	9691532	9691732	-	1	NA	NA	NA	186968	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.010000	0.422886	
mm_109967.1	chr12	12788599	12788799	-	1	NA	NA	NA	-118782	NR_136889	102637952	Mm.421393	NR_136889		Gm34637	-	predicted gene, 34637	ncRNA	0.030000	0.592040	
mm_79922.1	chr9	65629547	65629747	+	1	NA	NA	NA	-935	NM_028030	71973	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	0.070000	0.651741	
mm_131654.1	chr16	20539898	20540098	+	1	NA	NA	NA	4518	NM_009679	11773	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.010000	0.398010	
mm_173077.1	chrX	137300586	137300786	-	1	NA	NA	NA	-180360	NM_007957	13984	Mm.8017	NM_007957	ENSMUSG00000023443	Esx1	Spx1	extraembryonic, spermatogenesis, homeobox 1	protein-coding	0.040000	0.487562	
mm_97401.1	chr11	77840159	77840359	+	1	NA	NA	NA	38961	NM_001291215	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.010000	0.597015	
mm_139992.1	chr17	72918207	72918407	+	1	NA	NA	NA	2	NM_029999	77889	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.095000	0.651741	-34(CCTTATAAATGC,+,0.00)
mm_71822.1	chr8	68895664	68895864	+	1	NA	NA	NA	15209	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.015000	0.492537	
mm_138275.1	chr17	34605394	34605594	+	1	NA	NA	NA	-367	NM_001163379	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.015000	0.492537	
mm_154054.1	chr19	55103036	55103236	-	1	NA	NA	NA	-3689	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.015000	0.447761	
mm_142388.1	chr17	44814521	44814721	-	1	NA	NA	NA	6	NM_009820	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.015000	0.427861	-41(GAGTTTTAAAGC,-,0.00),75(GCGTTTAAATGG,-,0.00)
mm_85470.1	chr9	105764559	105764759	-	1	NA	NA	NA	44989	NM_172927	245026	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0.025000	0.472637	
mm_146320.1	chr18	80609725	80609925	+	1	NA	NA	NA	-65279	NR_028424	100039348	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.015000	0.577114	
mm_73964.1	chr8	120488137	120488337	+	1	NA	NA	NA	-629	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.040000	0.621891	
mm_83201.1	chr9	41579418	41579618	-	1	NA	NA	NA	-1735	NR_015483	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.025000	0.522388	
mm_164169.1	chr15	74672512	74672712	-	1	NA	NA	NA	-42	NM_018790	11838	Mm.491310	NM_018790	ENSMUSG00000022602	Arc	Arc3.1|C86064|arg3.1|mArc	activity regulated cytoskeletal-associated protein	protein-coding	0.110000	0.726368	12(GCATAAATAGCC,+,0.00)
mm_121112.1	chr14	101822981	101823181	+	1	NA	NA	NA	-17542	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.010000	0.522388	
mm_148748.1	chr19	6046992	6047192	+	1	NA	NA	NA	-53	NM_001164709	74126	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0.105000	0.686567	
mm_64121.1	chr7	141088053	141088253	+	1	NA	NA	NA	8384	NM_019762	56460	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0.020000	0.606965	
mm_111928.1	chr12	108885704	108885904	-	1	NA	NA	NA	7394	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.025000	0.572139	
mm_151467.1	chr19	58670328	58670528	+	1	NA	NA	NA	63	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.030000	0.482587	-96(ACCTATAAAAGG,-,0.00)
mm_160955.1	chr11	98152834	98153034	-	1	NA	NA	NA	-3318	NM_028149	72194	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	0.020000	0.572139	
mm_64839.1	chr7	12998056	12998256	-	1	NA	NA	NA	36	NM_009512	26459	Mm.10984	NM_009512	ENSMUSG00000030382	Slc27a5	FACVL3|FATP5|VLCS-H2|VLCSH2|Vlacsr	solute carrier family 27 (fatty acid transporter), member 5	protein-coding	0.005000	0.447761	3(TTCCTTAAAGGC,-,0.00)
mm_134828.1	chr16	26095811	26096011	-	1	NA	NA	NA	9873	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.010000	0.427861	
mm_5735.1	chr1	45335075	45335275	-	1	NA	NA	NA	23637	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.000000	0.353234	
mm_93801.1	chr10	120898876	120899076	-	1	NA	NA	NA	-5	NM_177092	320183	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	0.120000	0.701493	
mm_17800.1	chr2	33304744	33304944	-	1	NA	NA	NA	66650	NM_001290570	241308	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0.010000	0.457711	
mm_75811.1	chr8	70302786	70302986	-	1	NA	NA	NA	101	NM_021538	59042	Mm.28668	NM_021538	ENSMUSG00000055681	Cope	1110005D17Rik|Cope1	coatomer protein complex, subunit epsilon	protein-coding	0.095000	0.626866	
mm_44795.1	chr5	32746193	32746393	-	1	NA	NA	NA	49	NM_001347332	320951	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.020000	0.567164	
mm_84924.1	chr9	81632186	81632386	-	1	NA	NA	NA	-72	NR_040397	319405	Mm.246494	NR_040393	ENSMUSG00000097466	D430036J16Rik	-	RIKEN cDNA D430036J16 gene	ncRNA	0.060000	0.592040	
mm_116224.1	chr13	32940532	32940732	-	1	NA	NA	NA	-24881	NM_011454	20708	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	0.000000	0.507463	
mm_171796.1	chr5	120893060	120893260	-	1	NA	NA	NA	-5547	NR_126529	23960	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	0.035000	0.512438	-26(TTCTATAAAAAC,-,0.00)
mm_138310.1	chr17	34647102	34647302	+	1	NA	NA	NA	56	NM_017406	12915	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	0.085000	0.646766	
mm_13088.1	chr2	91210792	91210992	+	1	NA	NA	NA	7980	NM_007387	11432	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.025000	0.527363	57(TTCTCTAAATGG,-,0.00)
mm_146823.1	chr18	21300020	21300220	-	1	NA	NA	NA	19	NM_001033445	381126	Mm.312276	NM_001033445	ENSMUSG00000042680	Garem1	C86169|Fam59a|Garem|Gm944|mKIAA4238	GRB2 associated regulator of MAPK1 subtype 1	protein-coding	0.115000	0.721393	
mm_6319.1	chr1	71603747	71603947	-	1	NA	NA	NA	46691	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.025000	0.522388	
mm_163647.1	chr13	63946447	63946647	-	1	NA	NA	NA	131213	NM_023507	76251	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	0.040000	0.542289	
mm_129782.1	chr15	82794176	82794376	-	1	NA	NA	NA	-31	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.005000	0.477612	-86(CCCCATATAGGC,+,0.00),-86(CCCCATATAGGC,-,0.00),-3(CTCTTTATAAGG,-,0.00),-1(CTTTATAAGGGA,+,0.00)
mm_122750.1	chr14	54181140	54181340	-	1	NA	NA	NA	72689	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.452736	
mm_90820.1	chr10	7919949	7920149	-	1	NA	NA	NA	36074	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.010000	0.467662	
mm_156179.1	chrX	130395720	130395920	+	1	NA	NA	NA	646078	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.005000	0.348259	
mm_138848.1	chr17	40727007	40727207	+	1	NA	NA	NA	-13	NM_001038500	619517	Mm.391018	NM_001038500	ENSMUSG00000073396	Esp1	EG619517|Gm6084	exocrine gland secreted peptide 1	protein-coding	0.005000	0.457711	
mm_50834.1	chr6	54816566	54816766	+	1	NA	NA	NA	-250	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.125000	0.716418	
mm_84581.1	chr9	69467279	69467479	-	1	NA	NA	NA	10435	NR_037296	100526560		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0.030000	0.517413	
mm_41941.1	chr5	105731605	105731805	+	1	NA	NA	NA	30895	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.025000	0.512438	
mm_132180.1	chr16	32400678	32400878	+	1	NA	NA	NA	272	NM_001160402	277203	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0.045000	0.597015	
mm_149762.1	chr19	22869751	22869951	+	1	NA	NA	NA	119246	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.005000	0.313433	
mm_18356.1	chr2	58195427	58195627	-	1	NA	NA	NA	31553	NR_045895	100042926	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	OTTMUSG00000012675	predicted gene 13546	ncRNA	0.005000	0.497512	
mm_9575.1	chr1	173982173	173982373	-	1	NA	NA	NA	571	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.015000	0.402985	
mm_138975.1	chr17	45367639	45367839	+	1	NA	NA	NA	65968	NM_152810	71702	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0.040000	0.572139	
mm_24874.1	chr3	95982323	95982523	+	1	NA	NA	NA	-3087	NR_045872	668224	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0.015000	0.497512	
mm_38033.1	chr4	133875134	133875334	-	1	NA	NA	NA	-503	NM_001285506	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.005000	0.552239	
mm_165187.1	chr2	29889942	29890142	+	1	NA	NA	NA	-21	NM_013615	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.145000	0.761194	
mm_113753.1	chr13	44731476	44731676	+	1	NA	NA	NA	305	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.035000	0.348259	
mm_104603.1	chr11	97187504	97187704	-	1	NA	NA	NA	288	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.105000	0.736318	
mm_131752.1	chr16	22439858	22440058	+	1	NA	NA	NA	-388	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.080000	0.587065	13(AGCTCTTAAAGG,-,0.00),14(GCTCTTAAAGGG,+,0.00),14(GCTCTTAAAGGG,-,0.00),16(TCTTAAAGGGGC,+,0.00)
mm_9603.1	chr1	175625464	175625664	-	1	NA	NA	NA	71	NM_010209	14194	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	0.120000	0.661692	
mm_74638.1	chr8	13254012	13254212	-	1	NA	NA	NA	50	NM_172750	234072	Mm.132785	NM_172750	ENSMUSG00000031448	Adprhl1	Arh2|D330008N11Rik	ADP-ribosylhydrolase like 1	protein-coding	0.020000	0.552239	
mm_61333.1	chr7	68275865	68276065	+	1	NA	NA	NA	629	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.040000	0.641791	
mm_100701.1	chr11	3633384	3633584	-	1	NA	NA	NA	14052	NR_110490	544752	Mm.390314	NR_002321	ENSMUSG00000056579	Tug1	AI316828	taurine upregulated gene 1	ncRNA	0.020000	0.472637	
mm_156803.1	chrX	163909080	163909280	+	1	NA	NA	NA	163	NM_001290379	108012	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	0.120000	0.751244	
mm_29204.1	chr3	106767880	106768080	-	1	NA	NA	NA	22169	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.000000	0.412935	
mm_45234.1	chr5	53594228	53594428	-	1	NA	NA	NA	3842	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.020000	0.462687	
mm_69779.1	chr7	141060755	141060955	-	1	NA	NA	NA	-419	NM_177897	330671	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.125000	0.681592	
mm_26711.1	chr3	157993513	157993713	+	1	NA	NA	NA	38141	NM_001093753	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.000000	0.442786	
mm_88032.1	chr10	67285394	67285594	+	1	NA	NA	NA	-213	NM_001036293	641340	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.060000	0.601990	
mm_43376.1	chr5	135671397	135671597	+	1	NA	NA	NA	-17648	NM_008898	18984	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.005000	0.507463	
mm_92302.1	chr10	75052895	75053095	-	1	NA	NA	NA	-7901	NM_001081412	110279	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.025000	0.542289	
mm_85524.1	chr9	106464790	106464990	-	1	NA	NA	NA	1050	NM_001159652	436090	Mm.482905	NM_001159652	ENSMUSG00000091735	Gpr62	4933402E03Rik	G protein-coupled receptor 62	protein-coding	0.120000	0.731343	
mm_69374.1	chr7	130998351	130998551	-	1	NA	NA	NA	-33625	NM_001347632	12945	Mm.4138	NM_007769	ENSMUSG00000047517	Dmbt1	CRP|CRP-[a]|CRP-[b]|Crpd|DBMT1|gp300|p80	deleted in malignant brain tumors 1	protein-coding	0.005000	0.487562	
mm_82407.1	chr9	14771096	14771296	-	1	NA	NA	NA	-166	NM_029306	69325	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	0.020000	0.512438	
mm_76314.1	chr8	84662912	84663112	-	1	NA	NA	NA	-160	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.035000	0.522388	
mm_126398.1	chr15	80221793	80221993	+	1	NA	NA	NA	-12187	NM_178719	239555	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.030000	0.497512	
mm_81434.1	chr9	109095340	109095540	+	1	NA	NA	NA	4	NM_172775	235611	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.150000	0.786070	
mm_167520.1	chr9	20642018	20642218	+	1	NA	NA	NA	688	NM_013911	30843	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding	0.100000	0.666667	
mm_39514.1	chr5	21256722	21256922	+	1	NA	NA	NA	70555	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.005000	0.432836	
mm_36931.1	chr4	108451267	108451467	-	1	NA	NA	NA	-8059	NM_175472	230594	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.015000	0.363184	
mm_122737.1	chr14	53961514	53961714	-	1	NA	NA	NA	292315	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.035000	0.532338	
mm_143057.1	chr17	57004778	57004978	-	1	NA	NA	NA	-4773	NM_008954	19197	Mm.86487	NM_008954	ENSMUSG00000002664	Pspn	PSP	persephin	protein-coding	0.015000	0.606965	
mm_128665.1	chr15	60164457	60164657	-	1	NA	NA	NA	-147939	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.000000	0.388060	
mm_2173.1	chr1	88406845	88407045	+	1	NA	NA	NA	-65	NM_029269	75396	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	0.010000	0.472637	
mm_75925.1	chr8	71504332	71504532	-	1	NA	NA	NA	7337	NM_032398	84094	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	0.010000	0.452736	
mm_162403.1	chr1	85699436	85699636	+	1	NA	NA	NA	37070	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.015000	0.537313	
mm_27042.1	chr3	27153724	27153924	-	1	NA	NA	NA	30	NM_007900	13605	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536|mKIAA4037	ect2 oncogene	protein-coding	0.070000	0.547264	-41(GCTCTTAGAGAG,+,0.00),86(CTTTTTAAAATC,+,0.00)
mm_10675.1	chr2	21367448	21367648	+	1	NA	NA	NA	-19	NM_001004761	241263	Mm.166647	NM_175706	ENSMUSG00000045967	Gpr158	5330427M13Rik|mKIAA1136	G protein-coupled receptor 158	protein-coding	0.040000	0.557214	
mm_147532.1	chr18	53246569	53246769	-	1	NA	NA	NA	1007	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.010000	0.482587	
mm_120027.1	chr14	55824812	55825012	+	1	NA	NA	NA	117	NM_023699	73181	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	0.055000	0.597015	
mm_159788.1	chr5	107597280	107597480	+	1	NA	NA	NA	7	NM_001163462	231571	Mm.482420	NM_144911	ENSMUSG00000033773	Rpap2	AW060207	RNA polymerase II associated protein 2	protein-coding	0.055000	0.611940	
mm_116140.1	chr13	29654178	29654378	-	1	NA	NA	NA	201395	NR_131896	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0.015000	0.487562	
mm_77124.1	chr8	111325631	111325831	-	1	NA	NA	NA	12474	NM_001310613	74568	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0.010000	0.482587	
mm_37543.1	chr4	125122483	125122683	-	1	NA	NA	NA	5298	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.015000	0.606965	
mm_162516.1	chr1	156500305	156500505	+	1	NA	NA	NA	-26077	NM_009230	20652	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0.015000	0.517413	
mm_81526.1	chr9	110062550	110062750	+	1	NA	NA	NA	10629	NM_001311164	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.020000	0.507463	
mm_151258.1	chr19	53945817	53946017	+	1	NA	NA	NA	1041	NM_019658	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.015000	0.358209	
mm_136262.1	chr16	91024270	91024470	-	1	NA	NA	NA	-13062	NM_001164483	104015	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.000000	0.313433	
mm_102611.1	chr11	62457484	62457684	-	1	NA	NA	NA	-252	NM_177229	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.145000	0.771144	
mm_73196.1	chr8	95534038	95534238	+	1	NA	NA	NA	38	NM_172914	244608	Mm.248902	NM_172914	ENSMUSG00000036598	Ccdc113	4933409I22|BC060957	coiled-coil domain containing 113	protein-coding	0.060000	0.606965	-70(CCCTATAAACAG,+,0.00)
mm_53300.1	chr6	129045838	129046038	+	1	NA	NA	NA	37	NR_024263	232408	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.005000	0.452736	
mm_163559.1	chr13	24417034	24417234	+	1	NA	NA	NA	2012	NM_001284520	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.015000	0.482587	-72(GGATTTTAAAAG,-,0.00),-71(GATTTTAAAAGG,-,0.00)
mm_131916.1	chr16	23308011	23308211	+	1	NA	NA	NA	17641	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.000000	0.472637	87(CCTTATAGAAGC,+,0.00)
mm_131938.1	chr16	23613291	23613491	+	1	NA	NA	NA	3472	NM_023386	67775	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.025000	0.422886	
mm_8932.1	chr1	164181311	164181511	-	1	NA	NA	NA	-29194	NR_037987	100503816	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	0.005000	0.502488	-56(CTCTTTTAATGG,-,0.00),-54(CTTTTAATGGGT,+,0.00)
mm_47699.1	chr5	129787117	129787317	-	1	NA	NA	NA	36	NM_133900	100678	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	0.095000	0.601990	64(CGCTTTTAAGAG,-,0.00)
mm_134585.1	chr16	20424248	20424448	-	1	NA	NA	NA	2046	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.015000	0.457711	-74(TCCCTTTTAAGC,-,0.00),-72(CCTTTTAAGCTT,+,0.00)
mm_119986.1	chr14	55578330	55578530	+	1	NA	NA	NA	-64	NM_011189	19186	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0.080000	0.686567	
mm_44356.1	chr5	17795577	17795777	-	1	NA	NA	NA	40219	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.010000	0.338308	
mm_135567.1	chr16	50192723	50192923	-	1	NA	NA	NA	-119971	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.000000	0.293532	
mm_92899.1	chr10	83322802	83323002	-	1	NA	NA	NA	14915	NM_177388	338365	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.020000	0.492537	
mm_33487.1	chr4	130822624	130822824	+	1	NA	NA	NA	30187	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.050000	0.577114	
mm_121759.1	chr14	19645977	19646177	-	1	NA	NA	NA	-43490	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.005000	0.462687	
mm_29879.1	chr3	131019589	131019789	-	1	NA	NA	NA	-90608	NM_010703	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.040000	0.601990	
mm_64966.1	chr7	16614890	16615090	-	1	NA	NA	NA	3	NM_172739	232906	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.140000	0.706468	
mm_1382.1	chr1	66816359	66816559	+	1	NA	NA	NA	1136	NM_177645	68691	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.050000	0.492537	-67(GGATTTAAAAAC,-,0.00),-34(AACTATTAAAGG,-,0.00)
mm_133235.1	chr16	77026513	77026713	+	1	NA	NA	NA	12544	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.010000	0.412935	
mm_57842.1	chr6	129467455	129467655	-	1	NA	NA	NA	5224	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.417910	
mm_64828.1	chr7	12803526	12803726	-	1	NA	NA	NA	15234	NM_026046	67230	Mm.333574	NM_026046	ENSMUSG00000057894	Zfp329	2810439M05Rik|4632409L22Rik|ZNF329	zinc finger protein 329	protein-coding	0.055000	0.606965	
mm_2842.1	chr1	131638222	131638422	+	1	NA	NA	NA	8	NM_007799	13034	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	0.015000	0.447761	
mm_80311.1	chr9	74362511	74362711	+	1	NA	NA	NA	252277	NM_001033500	546144	Mm.335289	NM_177908	ENSMUSG00000044976	Wdr72	AW558070|D230040E23	WD repeat domain 72	protein-coding	0.005000	0.407960	
mm_15375.1	chr2	156475591	156475791	+	1	NA	NA	NA	157	NM_001006664	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.150000	0.830846	
mm_134665.1	chr16	22252285	22252485	-	1	NA	NA	NA	13620	NM_001330554	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding	0.020000	0.368159	
mm_147791.1	chr18	61647726	61647926	-	1	NA	NA	NA	68	NR_029557	387163		NR_029557	ENSMUSG00000065592	Mir145a	Mir145|Mirn145|mir-145a|mmu-mir-145|mmu-mir-145a	microRNA 145a	ncRNA	0.030000	0.562189	
mm_126884.1	chr15	89454011	89454211	+	1	NA	NA	NA	200	NM_021921	60597	Mm.173337	NM_021921	ENSMUSG00000022619	Mapk8ip2	3230402N03Rik|AI847694|AW049958|IB2|Jip2|R75148	mitogen-activated protein kinase 8 interacting protein 2	protein-coding	0.115000	0.751244	
mm_81110.1	chr9	106453283	106453483	+	1	NA	NA	NA	-455	NM_021567	59092	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	0.045000	0.611940	
mm_41981.1	chr5	107534624	107534824	+	1	NA	NA	NA	13	NM_175241	76421	Mm.67037	NM_175241	ENSMUSG00000089798	1700028K03Rik	-	RIKEN cDNA 1700028K03 gene	protein-coding	0.045000	0.606965	
mm_138481.1	chr17	35194984	35195184	+	1	NA	NA	NA	112	NR_105939	102465588		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	0.015000	0.547264	
mm_122296.1	chr14	34588562	34588762	-	1	NA	NA	NA	19	NM_001039076	24131	Mm.29733	NM_011918	ENSMUSG00000021798	Ldb3	AW742271|PDLIM6|ZASP	LIM domain binding 3	protein-coding	0.025000	0.626866	-56(GTCCATTTATGG,-,0.00),-54(CCATTTATGGGC,+,0.00)
mm_158900.1	chr1	31222776	31222976	+	1	NA	NA	NA	37	NM_029062	74708	Mm.246796	NM_029062	ENSMUSG00000026063	Pih1d3	4930521A18Rik	PIH1 domain containing 3	protein-coding	0.015000	0.452736	
mm_11345.1	chr2	30807864	30808064	+	1	NA	NA	NA	-13	NM_170592	66617	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	0.070000	0.641791	
mm_21196.1	chr2	155450965	155451165	-	1	NA	NA	NA	-10282	NM_019825	56406	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	0.005000	0.303483	-96(CCTTTTATATAA,+,0.00)
mm_23548.1	chr3	61366287	61366487	+	1	NA	NA	NA	1880	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.000000	0.388060	
mm_91933.1	chr10	60687152	60687352	-	1	NA	NA	NA	9238	NM_001252635	22295	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0.150000	0.741294	
mm_13921.1	chr2	120609322	120609522	+	1	NA	NA	NA	40	NM_025475	66296	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0.105000	0.676617	
mm_102138.1	chr11	53480097	53480297	-	1	NA	NA	NA	-2	NM_183173	237761	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	0.050000	0.616915	
mm_8924.1	chr1	163725030	163725230	-	1	NA	NA	NA	102	NM_001143956	240879	Mm.484621	NM_001143956	ENSMUSG00000040113	Mettl11b	Gm207|NTM1B	methyltransferase like 11B	protein-coding	0.010000	0.512438	
mm_89985.1	chr10	111985360	111985560	+	1	NA	NA	NA	11804	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.030000	0.407960	24(TTTTAAATAGCC,+,0.00)
mm_11075.1	chr2	27677203	27677403	+	1	NA	NA	NA	102	NM_011305	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.210000	0.830846	
mm_123787.1	chr14	70351295	70351495	-	1	NA	NA	NA	29	NM_144808	213053	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0.110000	0.761194	
mm_43291.1	chr5	134227187	134227387	+	1	NA	NA	NA	2338	NM_001286037	17969	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.030000	0.567164	
mm_95155.1	chr11	35769745	35769945	+	1	NA	NA	NA	350	NM_145962	211347	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0.105000	0.726368	
mm_172422.1	chr7	26707189	26707389	+	1	NA	NA	NA	-20859	NM_001081148	243881	Mm.294678	NM_001081148	ENSMUSG00000040650	Cyp2b23	EG243881	cytochrome P450, family 2, subfamily b, polypeptide 23	protein-coding	0.040000	0.492537	
mm_168079.1	chr10	11609122	11609322	+	1	NA	NA	NA	-2	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.060000	0.472637	
mm_152136.1	chr19	7039814	7040014	-	1	NA	NA	NA	112	NM_016737	20867	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	0.100000	0.696517	
mm_93222.1	chr10	95175909	95176109	-	1	NA	NA	NA	-30184	NR_131146	628062		NR_131146		Gm29684	-	predicted gene, 29684	ncRNA	0.035000	0.512438	-20(CCCTATATGAGG,-,0.00)
mm_54312.1	chr6	30157467	30157667	-	1	NA	NA	NA	8425	NR_029569	387177		NR_029569	ENSMUSG00000076361	Mir182	Mirn182|mir-182|mmu-mir-182	microRNA 182	ncRNA	0.015000	0.383085	
mm_47599.1	chr5	125037470	125037670	-	1	NA	NA	NA	34095	NM_028443	73121	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.030000	0.587065	
mm_142976.1	chr17	56140299	56140499	-	1	NA	NA	NA	-56	NM_001130456	20359	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0.120000	0.736318	
mm_100876.1	chr11	5971669	5971869	-	1	NA	NA	NA	16011	NM_019661	56418	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0.045000	0.562189	
mm_22727.1	chr3	19644471	19644671	+	1	NA	NA	NA	111	NM_001081281	381485	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0.015000	0.472637	
mm_125693.1	chr15	66891269	66891469	+	1	NA	NA	NA	-24	NM_018865	22402	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0.030000	0.552239	-89(CCCTTTAAGAGC,+,0.00),-89(CCCTTTAAGAGC,-,0.00),-88(CCTTTAAGAGCT,+,0.00)
mm_49282.1	chr6	17637803	17638003	+	1	NA	NA	NA	805	NM_007604	12343	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.035000	0.482587	
mm_113298.1	chr13	30731653	30731853	+	1	NA	NA	NA	-17480	NM_001347508	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.035000	0.472637	
mm_27427.1	chr3	51553956	51554156	-	1	NA	NA	NA	-5701	NR_033624	100039684	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	0.020000	0.457711	
mm_150791.1	chr19	44303147	44303347	+	1	NA	NA	NA	76	NR_039574	100628619		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.020000	0.467662	
mm_108042.1	chr12	73901339	73901539	+	1	NA	NA	NA	115	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.025000	0.462687	
mm_48931.1	chr6	4533653	4533853	+	1	NA	NA	NA	28135	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.020000	0.527363	
mm_79069.1	chr9	46240643	46240843	+	1	NA	NA	NA	-101	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.005000	0.572139	
mm_76403.1	chr8	84846228	84846428	-	1	NA	NA	NA	603	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.045000	0.537313	
mm_124248.1	chr14	101637454	101637654	-	1	NA	NA	NA	2917	NM_001033132	66200	Mm.250474	NM_001033132	ENSMUSG00000075486	Commd6	1110059J08Rik|1700063H17Rik	COMM domain containing 6	protein-coding	0.020000	0.477612	
mm_27292.1	chr3	45309779	45309979	-	1	NA	NA	NA	68381	NR_045172	72511	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.005000	0.323383	-59(CCATTTAAACTG,+,0.00)
mm_122173.1	chr14	31494923	31495123	-	1	NA	NA	NA	-46	NM_025907	67011	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	0.060000	0.597015	
mm_101383.1	chr11	23818863	23819063	-	1	NA	NA	NA	-47993	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.005000	0.492537	
mm_47675.1	chr5	128600558	128600758	-	1	NA	NA	NA	29	NR_015517	319616	Mm.387738	NR_015517	ENSMUSG00000072591	5930412G12Rik	-	RIKEN cDNA 5930412G12 gene	ncRNA	0.065000	0.726368	
mm_52019.1	chr6	94665444	94665644	+	1	NA	NA	NA	34601	NM_008377	16206	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.010000	0.442786	
mm_114044.1	chr13	54073635	54073835	+	1	NA	NA	NA	1890	NM_027324	14057	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	0.005000	0.482587	
mm_39175.1	chr4	155774429	155774629	-	1	NA	NA	NA	32	NM_147776	246228	Mm.26515	NM_147776	ENSMUSG00000042116	Vwa1	4932416A11Rik|WARP	von Willebrand factor A domain containing 1	protein-coding	0.075000	0.646766	
mm_107245.1	chr12	26479150	26479350	+	1	NA	NA	NA	10035	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.000000	0.393035	
mm_103613.1	chr11	78541372	78541572	-	1	NA	NA	NA	5036	NM_018854	55978	Mm.358671	NM_018854	ENSMUSG00000001105	Ift20	0610009H04Rik|AU015496	intraflagellar transport 20	protein-coding	0.010000	0.313433	
mm_150693.1	chr19	42159532	42159732	+	1	NA	NA	NA	-10935	NM_177319	319740	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	0.015000	0.457711	
mm_155205.1	chrX	56731689	56731889	+	1	NA	NA	NA	28	NM_010211	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.110000	0.741294	
mm_18318.1	chr2	57108217	57108417	-	1	NA	NA	NA	6721	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.020000	0.472637	
mm_94675.1	chr11	17460061	17460261	+	1	NA	NA	NA	202473	NM_001330649	57316	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.005000	0.462687	
mm_51411.1	chr6	78380674	78380874	+	1	NA	NA	NA	65	NM_011259	19694	Mm.2552	NM_011259	ENSMUSG00000079516	Reg3a	AV063448	regenerating islet-derived 3 alpha	protein-coding	0.005000	0.407960	
mm_43813.1	chr5	142905253	142905453	+	1	NA	NA	NA	1401	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.025000	0.577114	
mm_134121.1	chr16	10313816	10314016	-	1	NA	NA	NA	52	NM_007929	13731	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	0.115000	0.761194	
mm_84733.1	chr9	75071336	75071536	-	1	NA	NA	NA	230	NM_010864	17918	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	0.145000	0.805970	
mm_106612.1	chr11	120816121	120816321	-	1	NA	NA	NA	8326	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.045000	0.611940	
mm_114292.1	chr13	58807772	58807972	+	1	NA	NA	NA	175	NM_001025074	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.095000	0.651741	
mm_72542.1	chr8	83997276	83997476	+	1	NA	NA	NA	-296	NM_001081415	666704	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.125000	0.656716	
mm_109760.1	chr12	117843798	117843998	+	1	NA	NA	NA	37	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.105000	0.726368	
mm_69389.1	chr7	131362632	131362832	-	1	NA	NA	NA	-34	NM_026655	68277	Mm.121122	NM_026655	ENSMUSG00000040177	2310057M21Rik	3110040E10Rik|AI429544	RIKEN cDNA 2310057M21 gene	protein-coding	0.075000	0.641791	
mm_67973.1	chr7	100656733	100656933	-	1	NA	NA	NA	132	NM_001163187	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.020000	0.567164	
mm_85015.1	chr9	87731180	87731380	-	1	NA	NA	NA	-20	NM_023814	76365	Mm.158789	NM_023814	ENSMUSG00000032419	Tbx18	2810012F10Rik|2810404D13Rik	T-box18	protein-coding	0.045000	0.492537	
mm_68593.1	chr7	116038711	116038911	-	1	NA	NA	NA	-67	NM_001025559	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.040000	0.527363	
mm_72643.1	chr8	84701777	84701977	+	1	NA	NA	NA	420	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.050000	0.616915	
mm_12066.1	chr2	59598480	59598680	+	1	NA	NA	NA	-13462	NM_198294	66860	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.005000	0.338308	47(TGTTATTAAAGG,-,0.00)
mm_77553.1	chr8	123284003	123284203	-	1	NA	NA	NA	-29881	NM_028200	72325	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	0.025000	0.532338	
mm_30723.1	chr4	13743395	13743595	+	1	NA	NA	NA	193	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.150000	0.771144	
mm_118678.1	chr14	22079762	22079962	+	1	NA	NA	NA	60150	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.015000	0.447761	
mm_61556.1	chr7	79499927	79500127	+	1	NA	NA	NA	1	NR_040313	101694	Mm.41661	NR_040311	ENSMUSG00000097023	Mir9-3hg	AI854517	Mir9-3 host gene	ncRNA	0.155000	0.776119	
mm_18395.1	chr2	60210375	60210575	-	1	NA	NA	NA	539	NM_020575	57438	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.055000	0.562189	
mm_49679.1	chr6	32112022	32112222	+	1	NA	NA	NA	61834	NM_029587	76382	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0.000000	0.512438	
mm_6839.1	chr1	84233211	84233411	-	1	NA	NA	NA	-14350	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.422886	
mm_83319.1	chr9	44144623	44144823	-	1	NA	NA	NA	10065	NM_023061	84004	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.000000	0.502488	
mm_71097.1	chr8	35208676	35208876	+	1	NA	NA	NA	-166965	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.000000	0.432836	
mm_128201.1	chr15	35932186	35932386	-	1	NA	NA	NA	5960	NM_053071	12864	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0.005000	0.258706	
mm_45339.1	chr5	65752064	65752264	-	1	NA	NA	NA	-11357	NM_001024917	333789	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.015000	0.472637	
mm_143127.1	chr17	57212626	57212826	-	1	NA	NA	NA	4502	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.010000	0.522388	
mm_138569.1	chr17	35380319	35380519	+	1	NA	NA	NA	802	NM_001143689	15015	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	0.115000	0.676617	
mm_48300.1	chr5	138264035	138264235	-	1	NA	NA	NA	-83	NM_153161	231807	Mm.164493	NM_153161	ENSMUSG00000036948	BC037034	-	cDNA sequence BC037034	protein-coding	0.035000	0.522388	
mm_58608.1	chr7	5057075	5057275	+	1	NA	NA	NA	449	NM_146178	232821	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	0.080000	0.681592	
mm_64614.1	chr7	3502490	3502690	-	1	NA	NA	NA	-38	NM_177363	245126	Mm.245747	NM_177363	ENSMUSG00000053338	Tarm1	9930022N03Rik|ENSMUSG00000053338|Gm9904|OLT-2	T cell-interacting, activating receptor on myeloid cells 1	protein-coding	0.015000	0.502488	
mm_155645.1	chrX	85573900	85574100	+	1	NA	NA	NA	-22	NM_025729	66724	Mm.119646	NM_025729	ENSMUSG00000035476	Tab3	4921526G09Rik|Map3k7ip3|mKIAA4135	TGF-beta activated kinase 1/MAP3K7 binding protein 3	protein-coding	0.115000	0.736318	
mm_47023.1	chr5	115491794	115491994	-	1	NA	NA	NA	-7410	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.050000	0.547264	
mm_43881.1	chr5	143758296	143758496	+	1	NA	NA	NA	42	NR_015486	320064	Mm.332820	NR_015486		D130017N08Rik	1700012G11Rik	RIKEN cDNA D130017N08 gene	ncRNA	0.050000	0.572139	
mm_37162.1	chr4	117155746	117155946	-	1	NA	NA	NA	2	NR_030704	100216533		NR_030704	ENSMUSG00000092680	Snord55	-	small nucleolar RNA, C/D box 55	snoRNA	0.115000	0.736318	
mm_82110.1	chr9	123150734	123150934	+	1	NA	NA	NA	-112	NM_011606	21922	Mm.34588	NM_011606	ENSMUSG00000025784	Clec3b	Tna	C-type lectin domain family 3, member b	protein-coding	0.005000	0.457711	
mm_8703.1	chr1	158712836	158713036	-	1	NA	NA	NA	207311	NR_030441	735253		NR_030441	ENSMUSG00000070103	Mir488	Mirn488|mir-488|mmu-mir-488	microRNA 488	ncRNA	0.000000	0.373134	42(GCTTAAATACTG,+,0.00)
mm_127518.1	chr15	101999390	101999590	+	1	NA	NA	NA	4852	NM_031170	16691	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0.045000	0.572139	
mm_167669.1	chr9	74015779	74015979	-	1	NA	NA	NA	-82312	NM_001081153	208898	Mm.41035	NM_001081153	ENSMUSG00000062151	Unc13c	1500037O19Rik|AU019458|D9Ertd414e|Munc13-3|Unc13h3	unc-13 homolog C (C. elegans)	protein-coding	0.005000	0.442786	
mm_52752.1	chr6	120742655	120742855	+	1	NA	NA	NA	-31013	NM_001081048	71803	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	0.000000	0.288557	
mm_135986.1	chr16	75092664	75092864	-	1	NA	NA	NA	493297	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.020000	0.417910	
mm_9606.1	chr1	175692503	175692703	-	1	NA	NA	NA	29	NM_010098	13603	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	0.135000	0.751244	
mm_60224.1	chr7	43579509	43579709	+	1	NA	NA	NA	23	NM_172482	210105	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	0.055000	0.557214	
mm_22025.1	chr2	168039313	168039513	-	1	NA	NA	NA	-28820	NM_001080708	69553	Mm.68454	NM_001080708	ENSMUSG00000074577	Fam65c	2310033K02Rik|Gm124	family with sequence similarity 65, member C	protein-coding	0.005000	0.373134	
mm_171104.1	chr3	133544220	133544420	-	1	NA	NA	NA	70	NM_001346736	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.090000	0.616915	
mm_119241.1	chr14	33471488	33471688	+	1	NA	NA	NA	-24430	NM_016700	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.010000	0.542289	
mm_17948.1	chr2	36136514	36136714	-	1	NA	NA	NA	90	NM_026434	67889	Mm.205937	NM_026434	ENSMUSG00000026889	Rbm18	2010004P11Rik|AU015530	RNA binding motif protein 18	protein-coding	0.130000	0.686567	
mm_83821.1	chr9	53912715	53912915	-	1	NA	NA	NA	62486	NM_177769	270162	Mm.259791	NM_177769	ENSMUSG00000041986	Elmod1	4831417L10|AI428506|AI834991	ELMO/CED-12 domain containing 1	protein-coding	0.035000	0.467662	
mm_79103.1	chr9	46243313	46243513	+	1	NA	NA	NA	2569	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.015000	0.552239	
mm_106972.1	chr12	8973941	8974141	+	1	NA	NA	NA	40	NM_172470	74682	Mm.87389	NM_172470	ENSMUSG00000066643	Wdr35	4930459M12Rik|4931430C06|mKIAA1336	WD repeat domain 35	protein-coding	0.120000	0.656716	
mm_49369.1	chr6	23251060	23251260	+	1	NA	NA	NA	-2896	NM_028462	73191	Mm.55115	NM_028462	ENSMUSG00000029697	Fezf1	3110069A13Rik|Fez|Zfp312-like|fez-like	Fez family zinc finger 1	protein-coding	0.015000	0.293532	
mm_91400.1	chr10	30803015	30803215	-	1	NA	NA	NA	-8	NM_172495	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.145000	0.786070	
mm_149616.1	chr19	16435523	16435723	+	1	NA	NA	NA	-44	NM_008137	14675	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.030000	0.611940	
mm_2991.1	chr1	133163907	133164107	+	1	NA	NA	NA	32841	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.135000	0.781095	
mm_62101.1	chr7	96211808	96212008	+	1	NA	NA	NA	237	NM_001310760	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.040000	0.542289	
mm_58520.1	chr7	4139855	4140055	+	1	NA	NA	NA	2899	NM_172736	232798	Mm.22831	NM_172736	ENSMUSG00000035545	Leng8	AW049671	leukocyte receptor cluster (LRC) member 8	protein-coding	0.010000	0.532338	
mm_21062.1	chr2	152778949	152779149	-	1	NA	NA	NA	24876	NM_053091	84682	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit IV isoform 2	protein-coding	0.005000	0.522388	
mm_72555.1	chr8	84066753	84066953	+	1	NA	NA	NA	17	NM_009055	19724	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	0.090000	0.671642	
mm_121888.1	chr14	21741367	21741567	-	1	NA	NA	NA	1412	NM_013849	27389	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.005000	0.582090	
mm_73030.1	chr8	94179141	94179341	+	1	NA	NA	NA	152	NM_013602	17748	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.060000	0.577114	-34(GACTATAAAGAG,-,0.00)
mm_85974.1	chr9	112160585	112160785	-	1	NA	NA	NA	25264	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.005000	0.338308	
mm_102384.1	chr11	58904095	58904295	-	1	NA	NA	NA	30	NM_011758	22698	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	0.090000	0.686567	
mm_123020.1	chr14	55116303	55116503	-	1	NA	NA	NA	532	NM_177049	319984	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.010000	0.487562	
mm_98016.1	chr11	84880241	84880441	+	1	NA	NA	NA	-56	NM_001077636	70325	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	0.140000	0.776119	
mm_67320.1	chr7	79617551	79617751	-	1	NA	NA	NA	6	NM_019799	56315	Mm.10909	NM_019799	ENSMUSG00000030549	Rhcg	BB065800	Rhesus blood group-associated C glycoprotein	protein-coding	0.085000	0.666667	
mm_125664.1	chr15	65786957	65787157	+	1	NA	NA	NA	16	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0.170000	0.746269	
mm_112575.1	chr13	13628335	13628535	+	1	NA	NA	NA	38026	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.000000	0.328358	
mm_3500.1	chr1	150106882	150107082	+	1	NA	NA	NA	6951	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.025000	0.457711	
mm_151696.1	chr19	4396975	4397175	-	1	NA	NA	NA	2	NM_001001984	225876	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0.090000	0.676617	
mm_172062.1	chr6	132767607	132767807	-	1	NA	NA	NA	5576	NM_199153	387339	Mm.377902	NM_199153	ENSMUSG00000056901	Tas2r102	Tas2r2|mGR02|mt2r51	taste receptor, type 2, member 102	protein-coding	0.005000	0.447761	
mm_49500.1	chr6	29768182	29768382	+	1	NA	NA	NA	-161	NM_021414	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.095000	0.676617	
mm_84763.1	chr9	75599033	75599233	-	1	NA	NA	NA	0	NM_001038710	50876	Mm.291880	NM_016711	ENSMUSG00000032186	Tmod2	N-Tmod|NTMOD	tropomodulin 2	protein-coding	0.010000	0.422886	
mm_97015.1	chr11	71019547	71019747	+	1	NA	NA	NA	36	NM_025993	67139	Mm.28227	NM_025993	ENSMUSG00000040599	Mis12	2510025F08Rik|AU044651|Misc12	MIS12 kinetochore complex component	protein-coding	0.090000	0.631841	
mm_99265.1	chr11	101246263	101246463	+	1	NA	NA	NA	29	NM_019444	54409	Mm.260698	NM_019444	ENSMUSG00000001240	Ramp2	-	receptor (calcitonin) activity modifying protein 2	protein-coding	0.120000	0.776119	
mm_163478.1	chr12	105013027	105013227	-	1	NA	NA	NA	-3318	NM_172500	212073	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.055000	0.522388	
mm_104754.1	chr11	98463687	98463887	-	1	NA	NA	NA	16953	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.040000	0.547264	
mm_94398.1	chr11	5595337	5595537	+	1	NA	NA	NA	25753	NM_023816	76389	Mm.67300	NM_023816	ENSMUSG00000020481	Ankrd36	1700008J08Rik|1700012M14Rik|Ankrd48	ankyrin repeat domain 36	protein-coding	0.005000	0.378109	
mm_154635.1	chrX	7762809	7763009	+	1	NA	NA	NA	248	NM_172472	209446	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	0.095000	0.701493	
mm_18476.1	chr2	62412205	62412405	-	1	NA	NA	NA	-74	NM_001159543	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.015000	0.492537	
mm_11878.1	chr2	49516704	49516904	+	1	NA	NA	NA	65318	NM_172663	227867	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2 (Drosophila)	protein-coding	0.005000	0.293532	
mm_150487.1	chr19	39006860	39007060	+	1	NA	NA	NA	-59	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.000000	0.472637	27(CATTATAAAAGC,-,0.00)
mm_45889.1	chr5	88527747	88527947	-	1	NA	NA	NA	50	NM_152839	16069	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	0.010000	0.482587	5(CCTCTTATAGAC,+,0.00),7(TCTTATAGACAC,+,0.00)
mm_97532.1	chr11	78536262	78536462	+	1	NA	NA	NA	-74	NM_018854	55978	Mm.358671	NM_018854	ENSMUSG00000001105	Ift20	0610009H04Rik|AU015496	intraflagellar transport 20	protein-coding	0.075000	0.587065	
mm_94435.1	chr11	6292468	6292668	+	1	NA	NA	NA	10	NM_001252288	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.035000	0.487562	
mm_56307.1	chr6	91807340	91807540	-	1	NA	NA	NA	-47	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.070000	0.701493	
mm_38720.1	chr4	145234698	145234898	-	1	NA	NA	NA	12072	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.000000	0.407960	
mm_64652.1	chr7	4120350	4120550	-	1	NA	NA	NA	278	NR_033568	77323	Mm.378791	NR_033568	ENSMUSG00000086155	9430041J12Rik	-	RIKEN cDNA 9430041J12 gene	ncRNA	0.015000	0.606965	
mm_142758.1	chr17	49009658	49009858	-	1	NA	NA	NA	77176	NM_027452	70530	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0.010000	0.467662	
mm_131435.1	chr16	15888044	15888244	+	1	NA	NA	NA	858	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.105000	0.656716	
mm_114347.1	chr13	60927985	60928185	+	1	NA	NA	NA	8481	NM_001145799	13024	Mm.482089	NM_007796	ENSMUSG00000044258	Ctla2a	Ctla-2a	cytotoxic T lymphocyte-associated protein 2 alpha	protein-coding	0.010000	0.353234	
mm_41236.1	chr5	88764889	88765089	+	1	NA	NA	NA	-24	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.105000	0.736318	
mm_146442.1	chr18	84936108	84936308	+	1	NA	NA	NA	1183	NM_015798	50764	Mm.28369	NM_015798	ENSMUSG00000034391	Fbxo15	AU019763|Fbx15|ecat3	F-box protein 15	protein-coding	0.000000	0.358209	
mm_132099.1	chr16	31422173	31422373	+	1	NA	NA	NA	-24	NM_175177	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.030000	0.442786	
mm_159018.1	chr1	171285332	171285532	-	1	NA	NA	NA	2529	NM_013919	30941	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	0.025000	0.582090	
mm_115739.1	chr13	17804904	17805104	-	1	NA	NA	NA	93	NM_001081058	69562	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.205000	0.810945	
mm_9330.1	chr1	171849445	171849645	-	1	NA	NA	NA	9848	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.010000	0.422886	
mm_31329.1	chr4	46450996	46451196	+	1	NA	NA	NA	170	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.145000	0.756219	
mm_16433.1	chr2	180394264	180394464	+	1	NA	NA	NA	-4015	NR_029901	723954		NR_029901	ENSMUSG00000065460	Mir133a-2	Mirn133a-2|mir-133a-2	microRNA 133a-2	ncRNA	0.005000	0.472637	
mm_78049.1	chr9	14704411	14704611	+	1	NA	NA	NA	36222	NM_177905	330890	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	0.015000	0.477612	
mm_5402.1	chr1	33720259	33720459	-	1	NA	NA	NA	-60	NM_001159729	19335	Mm.86744	NM_008999	ENSMUSG00000004768	Rab23	AW545388|opb|opb2	RAB23, member RAS oncogene family	protein-coding	0.145000	0.721393	
mm_56736.1	chr6	115758912	115759112	-	1	NA	NA	NA	-13	NM_144805	94346	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0.025000	0.626866	
mm_22065.1	chr2	168712794	168712994	-	1	NA	NA	NA	21445	NM_001289445	11981	Mm.330819	NM_015731	ENSMUSG00000027546	Atp9a	IIa	ATPase, class II, type 9A	protein-coding	0.035000	0.557214	
mm_4056.1	chr1	165838574	165838774	+	1	NA	NA	NA	49993	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.015000	0.313433	
mm_35262.1	chr4	19892266	19892466	-	1	NA	NA	NA	30200	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.000000	0.532338	
mm_85265.1	chr9	99420282	99420482	-	1	NA	NA	NA	16330	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.025000	0.552239	
mm_159737.1	chr5	65862877	65863077	+	1	NA	NA	NA	-592	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.015000	0.457711	
mm_78085.1	chr9	17395200	17395400	+	1	NA	NA	NA	-896967	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.000000	0.417910	
mm_48434.1	chr5	140623143	140623343	-	1	NA	NA	NA	15902	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.025000	0.671642	
mm_26144.1	chr3	138065050	138065250	+	1	NA	NA	NA	2238	NR_037975	329763	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA	0.045000	0.597015	
mm_6911.1	chr1	84839257	84839457	-	1	NA	NA	NA	-53	NM_133975	14897	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.140000	0.736318	
mm_169183.1	chr13	65848541	65848741	-	1	NA	NA	NA	-264812	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.015000	0.517413	-38(GTGCATATAAGC,-,0.00)
mm_82054.1	chr9	122601059	122601259	+	1	NA	NA	NA	28658	NR_015610	319626	Mm.186748	NR_015610	ENSMUSG00000097736	9530059O14Rik	-	RIKEN cDNA 9530059O14 gene	ncRNA	0.005000	0.517413	
mm_85665.1	chr9	107675464	107675664	-	1	NA	NA	NA	4028	NM_008140	14685	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.010000	0.532338	
mm_171429.1	chr4	135300754	135300954	-	1	NA	NA	NA	-28094	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.055000	0.497512	-34(TTCTATAAAAGT,-,0.00)
mm_133338.1	chr16	81200572	81200772	+	1	NA	NA	NA	-25	NM_001113208	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.180000	0.800995	
mm_44991.1	chr5	38158816	38159016	-	1	NA	NA	NA	551	NM_010942	18196	Mm.7414	NM_010942	ENSMUSG00000029126	Nsg1	Neep21|m234|p21	neuron specific gene family member 1	protein-coding	0.050000	0.567164	29(CCCCAGATAAGG,-,0.00)
mm_116878.1	chr13	55021450	55021650	-	1	NA	NA	NA	-165	NM_001033245	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.015000	0.457711	
mm_120056.1	chr14	56673822	56674022	+	1	NA	NA	NA	5674	NM_023773	75339	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	0.005000	0.318408	-87(GCCTCTTAAAAC,-,0.00),-41(TTTTTTATAGAG,+,0.00)
mm_93407.1	chr10	107912265	107912465	-	1	NA	NA	NA	-231	NM_001177567	628870	Mm.336090	NM_001177567	ENSMUSG00000091455	Otogl	EG628870|Gm6924	otogelin-like	protein-coding	0.020000	0.507463	-78(GTGTATTAATGG,-,0.00)
mm_37134.1	chr4	116807496	116807696	-	1	NA	NA	NA	-37	NM_026654	68276	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	0.115000	0.656716	
mm_66012.1	chr7	30588864	30589064	-	1	NA	NA	NA	-238	NM_029274	75410	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	0.110000	0.721393	
mm_148817.1	chr19	6298192	6298392	+	1	NA	NA	NA	-8165	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.020000	0.552239	
mm_17304.1	chr2	26351991	26352191	-	1	NA	NA	NA	19	NM_026828	52838	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	0.090000	0.636816	
mm_127166.1	chr15	98708136	98708336	+	1	NA	NA	NA	9	NM_153518	105833	Mm.26205	NM_153518	ENSMUSG00000003354	Ccdc65	4933417K04Rik|AI428139|AU020178|NYD-SP28	coiled-coil domain containing 65	protein-coding	0.035000	0.537313	
mm_145364.1	chr18	56707733	56707933	+	1	NA	NA	NA	20	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.155000	0.766169	
mm_171560.1	chr4	147230124	147230324	+	1	NA	NA	NA	54358	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.010000	0.467662	
mm_18844.1	chr2	75467718	75467918	-	1	NA	NA	NA	-23639	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA	0.010000	0.497512	
mm_53523.1	chr6	136518771	136518971	+	1	NA	NA	NA	20	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.115000	0.666667	
mm_35591.1	chr4	43003792	43003992	-	1	NA	NA	NA	-3385	NM_009503	269523	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	0.020000	0.557214	
mm_128009.1	chr15	13173494	13173694	-	1	NA	NA	NA	81	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.035000	0.601990	
mm_129874.1	chr15	83423687	83423887	-	1	NA	NA	NA	9063	NM_011862	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.000000	0.537313	
mm_89612.1	chr10	96036575	96036775	+	1	NA	NA	NA	96012	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.010000	0.442786	
mm_170869.1	chr2	20180578	20180778	-	1	NA	NA	NA	-109235	NM_001081006	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.015000	0.527363	
mm_161556.1	chr16	13930175	13930375	+	1	NA	NA	NA	-10354	NM_001289563	93734	Mm.76554	NM_033564	ENSMUSG00000022679	Mpv17l	M-LP	Mpv17 transgene, kidney disease mutant-like	protein-coding	0.010000	0.457711	-85(CTCCTTAAAAAG,-,0.00),-83(CCTTAAAAAGGG,+,0.00)
mm_65610.1	chr7	27486129	27486329	-	1	NA	NA	NA	-724	NM_018820	55942	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0.015000	0.388060	
mm_92743.1	chr10	80957739	80957939	-	1	NA	NA	NA	27748	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.015000	0.532338	
mm_78597.1	chr9	37434092	37434292	+	1	NA	NA	NA	-1017	NM_001164767	19649	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0.015000	0.487562	
mm_97133.1	chr11	75063016	75063216	+	1	NA	NA	NA	2875	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.005000	0.442786	-77(TTCTATATAGGC,-,0.00)
mm_104708.1	chr11	98022533	98022733	-	1	NA	NA	NA	-6	NM_001282978	12295	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	0.135000	0.786070	
mm_70332.1	chr8	4493358	4493558	+	1	NA	NA	NA	53	NM_026058	67260	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0.075000	0.646766	
mm_60248.1	chr7	43774530	43774730	+	1	NA	NA	NA	13	NM_001177373	56538	Mm.154276	NM_019974	ENSMUSG00000067616	Klk11	2310015I08Rik|Prss20|TLSP	kallikrein related-peptidase 11	protein-coding	0.020000	0.557214	
mm_71523.1	chr8	46852559	46852759	+	1	NA	NA	NA	112914	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.030000	0.532338	
mm_18690.1	chr2	71530496	71530696	-	1	NA	NA	NA	1151	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.055000	0.467662	
mm_109762.1	chr12	117916002	117916202	+	1	NA	NA	NA	72241	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.010000	0.472637	
mm_52996.1	chr6	123267899	123268099	+	1	NA	NA	NA	5892	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.005000	0.437811	
mm_101804.1	chr11	46311994	46312194	-	1	NA	NA	NA	264	NM_001252460	76884	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0.090000	0.701493	
mm_141072.1	chr17	25837054	25837254	-	1	NA	NA	NA	-27	NM_144816	214951	Mm.490018	NM_144816	ENSMUSG00000025735	Rhbdl1	Rhbdl	rhomboid, veinlet-like 1 (Drosophila)	protein-coding	0.130000	0.731343	
mm_171630.1	chr4	19137842	19138042	+	1	NA	NA	NA	-142908	NM_013927	30952	Mm.445778	NM_013927	ENSMUSG00000056494	Cngb3	CCNC2|CNG6|Cngbeta2	cyclic nucleotide gated channel beta 3	protein-coding	0.000000	0.497512	-33(CCCTTTATAAGC,+,0.00),-33(CCCTTTATAAGC,-,0.00),-31(CTTTATAAGCAC,+,0.00)
mm_142515.1	chr17	46264496	46264696	-	1	NA	NA	NA	10431	NM_001111142	224813	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0.010000	0.462687	
mm_147941.1	chr18	66153322	66153522	-	1	NA	NA	NA	65911	NR_030467	751558		NR_030467	ENSMUSG00000076147	Mir694	Mirn694|mir-694|mmu-mir-694	microRNA 694	ncRNA	0.010000	0.442786	
mm_149876.1	chr19	25236679	25236879	+	1	NA	NA	NA	-423	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.110000	0.671642	
mm_157053.1	chrX	8074628	8074828	-	1	NA	NA	NA	32	NM_011514	20937	Mm.9244	NM_011514	ENSMUSG00000039231	Suv39h1	AI852103|AL022883|DXHXS7466e|H3-K9-HMTase 1|KMT1A|mIS6	suppressor of variegation 3-9 homolog 1 (Drosophila)	protein-coding	0.095000	0.651741	
mm_155455.1	chrX	73502648	73502848	+	1	NA	NA	NA	-338	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.025000	0.616915	
mm_23807.1	chr3	79885090	79885290	+	1	NA	NA	NA	-740	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.015000	0.412935	
mm_145947.1	chr18	67401611	67401811	+	1	NA	NA	NA	10980	NM_026473	67951	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	0.065000	0.577114	
mm_79448.1	chr9	56112042	56112242	+	1	NA	NA	NA	22166	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.010000	0.587065	
mm_52014.1	chr6	94500233	94500433	+	1	NA	NA	NA	19	NM_026255	67582	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	0.075000	0.587065	
mm_88823.1	chr10	80803573	80803773	+	1	NA	NA	NA	-1575	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.035000	0.527363	
mm_162337.1	chr1	45925502	45925702	-	1	NA	NA	NA	-8	NM_016917	53945	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.125000	0.746269	-13(CTCCCTATAAGC,-,0.00),-11(CCCTATAAGCCG,+,0.00)
mm_159702.1	chr5	27501291	27501491	-	1	NA	NA	NA	1	NM_028561	73526	Mm.389608	NM_028561	ENSMUSG00000048703	Speer4b	1700081O22Rik|SPEER-4B	spermatogenesis associated glutamate (E)-rich protein 4B	protein-coding	0.005000	0.487562	
mm_138150.1	chr17	34208663	34208863	+	1	NA	NA	NA	4284	NM_011530	21355	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.025000	0.597015	
mm_4073.1	chr1	166165739	166165939	+	1	NA	NA	NA	35379	NM_021610	59290	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197	glycoprotein A33 (transmembrane)	protein-coding	0.025000	0.572139	
mm_123388.1	chr14	63371048	63371248	-	1	NA	NA	NA	46039	NM_007549	12143	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.005000	0.457711	-38(ACCTTTATAAAC,-,0.00),-36(CTTTATAAACAG,+,0.00)
mm_162506.1	chr1	150102703	150102903	+	1	NA	NA	NA	2772	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.417910	
mm_94362.1	chr11	5009421	5009621	+	1	NA	NA	NA	22697	NM_007454	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.005000	0.432836	
mm_33796.1	chr4	134924322	134924522	+	1	NA	NA	NA	797	NM_023665	27981	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.085000	0.611940	
mm_44377.1	chr5	17820409	17820609	-	1	NA	NA	NA	15387	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.422886	
mm_96370.1	chr11	67236091	67236291	+	1	NA	NA	NA	-1621	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.015000	0.477612	
mm_150739.1	chr19	43782087	43782287	+	1	NA	NA	NA	-121	NM_013806	12780	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0.000000	0.437811	
mm_43883.1	chr5	143817731	143817931	+	1	NA	NA	NA	-54031	NM_013557	15467	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	0.095000	0.671642	
mm_42065.1	chr5	109547232	109547432	+	1	NA	NA	NA	11661	NM_016715	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.000000	0.412935	-56(AACCTTAAAAAG,-,0.00),-54(CCTTAAAAAGGT,+,0.00)
mm_101708.1	chr11	42000573	42000773	-	1	NA	NA	NA	41	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding	0.020000	0.447761	
mm_62494.1	chr7	101969718	101969918	+	1	NA	NA	NA	-25	NM_133947	101706	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	0.060000	0.611940	
mm_27789.1	chr3	75269887	75270087	-	1	NA	NA	NA	91	NM_026460	67931	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.000000	0.268657	
mm_16280.1	chr2	173788257	173788457	+	1	NA	NA	NA	50786	NM_019806	56491	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.000000	0.358209	
mm_103321.1	chr11	73198935	73199135	-	1	NA	NA	NA	-16	NM_031251	83429	Mm.259852	NM_031251	ENSMUSG00000005949	Ctns	AI195360|AW049661	cystinosis, nephropathic	protein-coding	0.040000	0.532338	
mm_148751.1	chr19	6057803	6058003	+	1	NA	NA	NA	15	NM_001160239	14109	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	0.130000	0.676617	
mm_50492.1	chr6	48988793	48988993	+	1	NA	NA	NA	2032	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.030000	0.532338	
mm_42884.1	chr5	122372361	122372561	+	1	NA	NA	NA	-47	NM_024216	68080	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	0.115000	0.601990	
mm_48630.1	chr5	145136870	145137070	-	1	NA	NA	NA	3119	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.030000	0.542289	
mm_29095.1	chr3	104780895	104781095	-	1	NA	NA	NA	-61	NM_027982	71887	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	0.060000	0.681592	
mm_165481.1	chr2	164333354	164333554	+	1	NA	NA	NA	689	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.045000	0.507463	
mm_26080.1	chr3	136670604	136670804	+	1	NA	NA	NA	638	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.150000	0.766169	
mm_97634.1	chr11	78961872	78962072	+	1	NA	NA	NA	22952	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.005000	0.353234	
mm_173321.1	chrY	90736892	90737092	+	1	NA	NA	NA	18058	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.477612	
mm_82034.1	chr9	121996006	121996206	+	1	NA	NA	NA	-80	NM_153540	215494	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	0.060000	0.532338	
mm_77967.1	chr9	7786700	7786900	+	1	NA	NA	NA	2410	NR_049191	100885830		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0.010000	0.348259	-90(TCTTAAAAGGCC,+,0.00)
mm_101497.1	chr11	31824427	31824627	-	1	NA	NA	NA	20	NR_102310	414116	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.030000	0.537313	
mm_118080.1	chr13	103334365	103334565	-	1	NA	NA	NA	27	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.150000	0.766169	
mm_81429.1	chr9	109082410	109082610	+	1	NA	NA	NA	14	NM_025689	66658	Mm.128227	NM_025689	ENSMUSG00000025645	Ccdc51	5730568A12Rik|AI551049	coiled-coil domain containing 51	protein-coding	0.050000	0.587065	-47(GTATTTTAAAGG,-,0.00)
mm_76851.1	chr8	105347813	105348013	-	1	NA	NA	NA	57	NM_177699	234686	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0.075000	0.651741	
mm_31257.1	chr4	45018547	45018747	+	1	NA	NA	NA	38	NM_001285800	64424	Mm.282932	NM_022811	ENSMUSG00000028318	Polr1e	53kDa|AU042259|D030019D19Rik|Paf53|Praf1	polymerase (RNA) I polypeptide E	protein-coding	0.060000	0.601990	
mm_157504.1	chrX	48594523	48594723	-	1	NA	NA	NA	-171	NM_001166649	208968	Mm.293819	NM_153532	ENSMUSG00000036916	Zfp280c	BC028839|Suhw3|Zfp633|Znf280c|mKIAA1584	zinc finger protein 280C	protein-coding	0.050000	0.582090	
mm_72605.1	chr8	84420773	84420973	+	1	NA	NA	NA	5509	NM_001252061	12286	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.015000	0.452736	-76(CCTTTTCTAGGG,+,0.00)
mm_4761.1	chr1	182436210	182436410	+	1	NA	NA	NA	27143	NM_173378	209456	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.005000	0.422886	
mm_161309.1	chr14	37098065	37098265	-	1	NA	NA	NA	146	NM_130878	170677	Mm.156506	NM_130878	ENSMUSG00000021803	Cdhr1	Pcdh21|Prcad|mKIAA1775	cadherin-related family member 1	protein-coding	0.080000	0.691542	
mm_101171.1	chr11	16983145	16983345	-	1	NA	NA	NA	25473	NM_019549	56193	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.010000	0.492537	
mm_45211.1	chr5	52992262	52992462	-	1	NA	NA	NA	-70	NR_040413	75954	Mm.258937	NR_040413	ENSMUSG00000106352	5033403H07Rik	-	RIKEN cDNA 5033403H07 gene	ncRNA	0.000000	0.422886	
mm_107294.1	chr12	30584348	30584548	+	1	NA	NA	NA	5	NM_172049	211986	Mm.34035	NM_172049	ENSMUSG00000043061	Tmem18	BC024093	transmembrane protein 18	protein-coding	0.095000	0.542289	
mm_141420.1	chr17	29435335	29435535	-	1	NA	NA	NA	-55610	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.010000	0.512438	
mm_78835.1	chr9	44240612	44240812	+	1	NA	NA	NA	35	NM_001081369	270150	Mm.347681	NM_001081369	ENSMUSG00000070306	Ccdc153	-	coiled-coil domain containing 153	protein-coding	0.000000	0.502488	
mm_41792.1	chr5	103753471	103753671	+	1	NA	NA	NA	-591	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.020000	0.472637	
mm_99885.1	chr11	109440035	109440235	+	1	NA	NA	NA	57	NR_040680	100503496	Mm.265874	NR_040680		LOC100503496	-	uncharacterized LOC100503496	ncRNA	0.090000	0.666667	
mm_15760.1	chr2	164289122	164289322	+	1	NA	NA	NA	-45	NM_001311114	64335	Mm.389393	NM_021363	ENSMUSG00000017003	Svs3a	9530026M05Rik|BB121242|Semg2|Svp-3|Svp3|Svs3	seminal vesicle secretory protein 3A	protein-coding	0.000000	0.437811	
mm_73685.1	chr8	111556296	111556496	+	1	NA	NA	NA	18053	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.015000	0.437811	
mm_64023.1	chr7	140353467	140353667	+	1	NA	NA	NA	-7580	NM_146955	18361	Mm.222844	NM_146955	ENSMUSG00000060112	Olfr60	IH6|MOR253-6	olfactory receptor 60	protein-coding	0.000000	0.388060	-60(ACCTTTAAAAAA,-,0.00)
mm_142293.1	chr17	40793977	40794177	-	1	NA	NA	NA	69	NM_001204071	22024	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding	0.045000	0.557214	
mm_83656.1	chr9	49515165	49515365	-	1	NA	NA	NA	-3023	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.005000	0.373134	
mm_44286.1	chr5	8367978	8368178	-	1	NA	NA	NA	82	NM_001007221	11496	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.100000	0.736318	
mm_41534.1	chr5	92825731	92825931	+	1	NA	NA	NA	16449	NM_001077595	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.010000	0.472637	
mm_16456.1	chr2	180582634	180582834	+	1	NA	NA	NA	1430	NM_028479	73247	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	0.145000	0.726368	
mm_110063.1	chr12	21373410	21373610	-	1	NA	NA	NA	122	NR_102380	11491	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	0.085000	0.636816	
mm_118517.1	chr14	14686316	14686516	+	1	NA	NA	NA	-16609	NM_001033270	218756	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.030000	0.527363	
mm_61520.1	chr7	78913814	78914014	+	1	NA	NA	NA	149	NM_020583	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.010000	0.547264	
mm_6448.1	chr1	74008402	74008602	-	1	NA	NA	NA	115945	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.015000	0.557214	
mm_81033.1	chr9	104569698	104569898	+	1	NA	NA	NA	10	NM_028719	74020	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	0.025000	0.626866	
mm_168717.1	chr12	10738406	10738606	-	1	NA	NA	NA	292118	NR_110487	328061	Mm.56067	NR_110487		Gm38407	4931412M21	predicted gene, 38407	ncRNA	0.015000	0.522388	-19(CTTTTTATAAGC,+,0.00),-19(CTTTTTATAAGC,-,0.00)
mm_159418.1	chr3	106167436	106167636	-	1	NA	NA	NA	28	NM_009892	12655	Mm.387173	NM_009892	ENSMUSG00000040809	Chil3	AI505981|Chi3l3|ECF-L|Ym1	chitinase-like 3	protein-coding	0.010000	0.407960	-34(GTATATAAAAAG,-,0.00)
mm_139982.1	chr17	72836598	72836798	+	1	NA	NA	NA	-6	NM_027166	383295	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee-like 5 (Drosophila)	protein-coding	0.095000	0.696517	
mm_63818.1	chr7	134022724	134022924	+	1	NA	NA	NA	202273	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.010000	0.452736	
mm_95714.1	chr11	54516622	54516822	+	1	NA	NA	NA	-6123	NM_001252494	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.000000	0.348259	
mm_113473.1	chr13	36727236	36727436	+	1	NA	NA	NA	7141	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.040000	0.601990	
mm_53084.1	chr6	124996717	124996917	+	1	NA	NA	NA	97	NM_175696	319352	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.160000	0.805970	
mm_53978.1	chr6	6817927	6818127	-	1	NA	NA	NA	-45307	NM_010057	13396	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding	0.005000	0.447761	
mm_2350.1	chr1	92910720	92910920	+	1	NA	NA	NA	-5	NM_181405	108657	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	0.170000	0.845771	
mm_12914.1	chr2	84916026	84916226	+	1	NA	NA	NA	-20520	NM_021398	58207	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	0.000000	0.427861	-34(GTCTATATAAAG,-,0.00)
mm_133414.1	chr16	85152685	85152885	+	1	NA	NA	NA	20922	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.020000	0.522388	
mm_151699.1	chr19	4440304	4440504	-	1	NA	NA	NA	845	NR_045989	319314	Mm.393810	NR_045989	ENSMUSG00000087132	A930001C03Rik	-	RIKEN cDNA A930001C03 gene	ncRNA	0.030000	0.497512	
mm_142507.1	chr17	46144087	46144287	-	1	NA	NA	NA	11	NM_029338	75564	Mm.17993	NM_029338	ENSMUSG00000023966	Rsph9	1700027N10Rik	radial spoke head 9 homolog (Chlamydomonas)	protein-coding	0.050000	0.611940	
mm_99204.1	chr11	101022813	101023013	+	1	NA	NA	NA	-7427	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.015000	0.482587	
mm_41400.1	chr5	90786247	90786447	+	1	NA	NA	NA	246	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.035000	0.611940	
mm_127198.1	chr15	99099367	99099567	+	1	NA	NA	NA	-17	NM_176835	72778	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	0.020000	0.587065	
mm_131230.1	chr16	10447331	10447531	+	1	NA	NA	NA	-81	NM_001013778	383103	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0.045000	0.582090	
mm_57050.1	chr6	122345766	122345966	-	1	NA	NA	NA	-5639	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.015000	0.527363	
mm_35477.1	chr4	40852006	40852206	-	1	NA	NA	NA	-1968	NR_039584	100628614		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.020000	0.437811	
mm_153198.1	chr19	34527339	34527539	-	1	NA	NA	NA	35	NM_001111100	16889	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.025000	0.626866	
mm_130160.1	chr15	91191941	91192141	-	1	NA	NA	NA	-234	NM_011994	26874	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.015000	0.457711	
mm_4963.1	chr1	191272515	191272715	+	1	NA	NA	NA	45503	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.010000	0.417910	
mm_48404.1	chr5	140235350	140235550	-	1	NA	NA	NA	86102	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.005000	0.472637	
mm_59838.1	chr7	29446290	29446490	+	1	NA	NA	NA	59070	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.015000	0.552239	
mm_158283.1	chrX	111537861	111538061	-	1	NA	NA	NA	-2	NM_025949	67071	Mm.37617	NM_025949	ENSMUSG00000025665	Rps6ka6	2610524K04Rik|RSK4|S6K-alpha-6	ribosomal protein S6 kinase polypeptide 6	protein-coding	0.040000	0.537313	
mm_73693.1	chr8	111582550	111582750	+	1	NA	NA	NA	44307	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.015000	0.427861	33(GTGTTTAAAGGC,-,0.00)
mm_13012.1	chr2	90917723	90917923	+	1	NA	NA	NA	227	NM_025576	66461	Mm.23926	NM_025576		Ptpmt1	1110001D10Rik|2810004N20Rik|PLIP	protein tyrosine phosphatase, mitochondrial 1	protein-coding	0.125000	0.781095	
mm_165138.1	chr2	11332720	11332920	+	1	NA	NA	NA	-6669	NR_040369	100503147	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	OTTMUSG00000011311	predicted gene 13293	ncRNA	0.015000	0.467662	
mm_121284.1	chr14	105043320	105043520	+	1	NA	NA	NA	71256	NR_040628	100502987	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0.005000	0.378109	
mm_6286.1	chr1	69686131	69686331	-	1	NA	NA	NA	-271	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.025000	0.432836	
mm_163243.1	chr11	105975124	105975324	+	1	NA	NA	NA	16	NM_009598	11421	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0.015000	0.597015	
mm_145829.1	chr18	65438566	65438766	+	1	NA	NA	NA	7669	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.378109	3(TCACATAAAAGG,-,0.00)
mm_57529.1	chr6	126535171	126535371	-	1	NA	NA	NA	284	NM_145983	16493	Mm.222831	NM_145983	ENSMUSG00000045534	Kcna5	Kv1.5	potassium voltage-gated channel, shaker-related subfamily, member 5	protein-coding	0.050000	0.666667	
mm_48688.1	chr5	146758339	146758539	-	1	NA	NA	NA	36517	NM_011669	22217	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.010000	0.467662	-49(CCCTTTAAACTG,+,0.00)
mm_100025.1	chr11	114903543	114903743	+	1	NA	NA	NA	13602	NM_170758	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.000000	0.467662	
mm_160564.1	chr9	54950912	54951112	-	1	NA	NA	NA	-58	NM_145229	246735	Mm.473773	NM_145229	ENSMUSG00000044820	AY074887	Mcpr1	cDNA sequence AY074887	protein-coding	0.125000	0.746269	86(GCCCCTAAAGGA,-,0.00)
mm_10762.1	chr2	24186298	24186498	+	1	NA	NA	NA	-78	NM_153511	215257	Mm.249379	NM_153511	ENSMUSG00000044103	Il1f9	Il36g	interleukin 1 family, member 9	protein-coding	0.005000	0.512438	12(CCCCATAAAAGA,-,0.00)
mm_147776.1	chr18	61531896	61532096	-	1	NA	NA	NA	4540	NM_177828	328967	Mm.488098	NM_177828	ENSMUSG00000045094	Arhgef37	4933429F08Rik	Rho guanine nucleotide exchange factor (GEF) 37	protein-coding	0.005000	0.417910	
mm_2478.1	chr1	105846612	105846812	+	1	NA	NA	NA	65989	NM_009399	21934	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.010000	0.393035	
mm_55098.1	chr6	49543669	49543869	-	1	NA	NA	NA	148165	NM_029916	77485	Mm.128054	NM_029916	ENSMUSG00000023403	Stk31	C330007K24Rik	serine threonine kinase 31	protein-coding	0.010000	0.427861	
mm_139842.1	chr17	69262181	69262381	+	1	NA	NA	NA	14925	NR_045428	69750	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.030000	0.582090	
mm_60161.1	chr7	39588418	39588618	+	1	NA	NA	NA	70752	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.055000	0.497512	
mm_53569.1	chr6	137252410	137252610	+	1	NA	NA	NA	211	NM_011216	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.085000	0.671642	
mm_102468.1	chr11	59976843	59977043	-	1	NA	NA	NA	-11999	NM_009026	19416	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding	0.005000	0.542289	
mm_50058.1	chr6	41178640	41178840	+	1	NA	NA	NA	-123532	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.005000	0.497512	
mm_89108.1	chr10	84622192	84622392	+	1	NA	NA	NA	-145	NM_027423	70428	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	0.070000	0.587065	
mm_171538.1	chr4	146971805	146972005	+	1	NA	NA	NA	-49945	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.020000	0.477612	
mm_6220.1	chr1	66863208	66863408	-	1	NA	NA	NA	1	NM_007381	11363	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.145000	0.805970	
mm_14626.1	chr2	136777313	136777513	+	1	NA	NA	NA	63963	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.030000	0.497512	
mm_103497.1	chr11	76571443	76571643	-	1	NA	NA	NA	-159	NM_198895	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.080000	0.706468	
mm_63044.1	chr7	121734333	121734533	+	1	NA	NA	NA	-46	NM_011326	20278	Mm.35247	NM_011326	ENSMUSG00000000216	Scnn1g	SCNEG	sodium channel, nonvoltage-gated 1 gamma	protein-coding	0.040000	0.621891	36(GGCTTTATGAGG,-,0.00)
mm_167992.1	chrX	170009708	170009908	+	1	NA	NA	NA	-30891	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.090000	0.651741	
mm_88163.1	chr10	69706254	69706454	+	1	NA	NA	NA	172646	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.020000	0.502488	70(CCTTTACAAGAG,+,0.00)
mm_52062.1	chr6	97385101	97385301	+	1	NA	NA	NA	74085	NM_001346639	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.015000	0.502488	
mm_60145.1	chr7	38183737	38183937	+	1	NA	NA	NA	50	NM_028166	72244	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0.095000	0.716418	
mm_152189.1	chr19	7441470	7441670	-	1	NA	NA	NA	18997	NR_105957	102466781		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	0.055000	0.626866	
mm_59284.1	chr7	24918544	24918744	+	1	NA	NA	NA	14298	NM_001130152	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.010000	0.661692	
mm_12246.1	chr2	68874969	68875169	+	1	NA	NA	NA	13628	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.010000	0.343284	
mm_88533.1	chr10	78400812	78401012	+	1	NA	NA	NA	7633	NR_105872	102465547		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	0.015000	0.592040	
mm_2501.1	chr1	106171804	106172004	+	1	NA	NA	NA	35	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.160000	0.711443	
mm_114191.1	chr13	55784461	55784661	+	1	NA	NA	NA	-18	NM_029772	76856	Mm.159795	NM_029772	ENSMUSG00000021499	Catsper3	4921522D01Rik|CACRC	cation channel, sperm associated 3	protein-coding	0.010000	0.487562	-28(CCTCATAAAGCA,+,0.00)
mm_101374.1	chr11	23770771	23770971	-	1	NA	NA	NA	99	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.065000	0.661692	
mm_131395.1	chr16	14317394	14317594	+	1	NA	NA	NA	-162	NM_025345	66086	Mm.42072	NM_025345	ENSMUSG00000022677	Fopnl	0610037P05Rik	Fgfr1op N-terminal like	protein-coding	0.055000	0.582090	
mm_151318.1	chr19	55888838	55889038	+	1	NA	NA	NA	-6383	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.045000	0.437811	
mm_26245.1	chr3	141510027	141510227	+	1	NA	NA	NA	44563	NM_001293561	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.000000	0.388060	
mm_10614.1	chr2	19199191	19199391	+	1	NA	NA	NA	173	NM_001081083	70882	Mm.276696	NM_001081083	ENSMUSG00000037683	Armc3	4921513G22Rik	armadillo repeat containing 3	protein-coding	0.050000	0.567164	
mm_110840.1	chr12	72939497	72939697	-	1	NA	NA	NA	-285	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	0.045000	0.552239	
mm_151971.1	chr19	5822191	5822391	-	1	NA	NA	NA	-19619	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.025000	0.537313	-14(CTCCAGAAAAGG,-,0.00)
mm_88664.1	chr10	80016647	80016847	+	1	NA	NA	NA	75	NM_001142701	70719	Mm.243954	NM_027521	ENSMUSG00000035697	Hmha1	6330406L22Rik|AW539505|Ha-1	histocompatibility (minor) HA-1	protein-coding	0.030000	0.636816	
mm_98703.1	chr11	96303933	96304133	+	1	NA	NA	NA	521	NM_008268	15413	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	0.090000	0.686567	
mm_42493.1	chr5	115474525	115474725	+	1	NA	NA	NA	8359	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.045000	0.542289	
mm_67841.1	chr7	98533729	98533929	-	1	NA	NA	NA	39607	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.005000	0.467662	
mm_3719.1	chr1	154078137	154078337	+	1	NA	NA	NA	-122950	NM_001204908	100503355	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	ENSMUSG00000066797|Gm10178|Gm203	zinc finger protein 648	protein-coding	0.005000	0.368159	-35(CTCTATATAAGC,-,0.00)
mm_58803.1	chr7	16308246	16308446	+	1	NA	NA	NA	-1237	NM_133234	170770	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.000000	0.427861	
mm_9328.1	chr1	171849417	171849617	-	1	NA	NA	NA	9820	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.010000	0.437811	
mm_170365.1	chr1	85272259	85272459	+	1	NA	NA	NA	-1793	NM_001037909	620078	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik|OTTMUSG00000029174	RIKEN cDNA C130026I21 gene	protein-coding	0.020000	0.557214	
mm_110103.1	chr12	26346499	26346699	-	1	NA	NA	NA	-111	NR_130981	75243	Mm.444753	NR_130981		4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	0.010000	0.577114	
mm_88779.1	chr10	80546811	80547011	+	1	NA	NA	NA	-7787	NM_026094	67331	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0.015000	0.597015	
mm_16483.1	chr2	180890744	180890944	+	1	NA	NA	NA	-3196	NR_029538	723951		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA	0.070000	0.676617	
mm_63568.1	chr7	128117218	128117418	+	1	NA	NA	NA	-12250	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.020000	0.517413	-7(CTTTTTCAAGCG,+,0.00)
mm_104966.1	chr11	100193001	100193201	-	1	NA	NA	NA	145	NM_201255	107656	Mm.445335	NM_201255	ENSMUSG00000051617	Krt9	EPPK|K9|Krt1-9	keratin 9	protein-coding	0.035000	0.616915	
mm_69660.1	chr7	139978658	139978858	-	1	NA	NA	NA	-3	NM_001347613	381933	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0.065000	0.631841	
mm_42762.1	chr5	121204464	121204664	+	1	NA	NA	NA	63	NM_011290	19988	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	0.065000	0.582090	-60(GCTTATAGACCG,+,0.00)
mm_34491.1	chr4	148591471	148591671	+	1	NA	NA	NA	58	NM_009272	20810	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	0.155000	0.805970	
mm_130356.1	chr15	97767443	97767643	-	1	NA	NA	NA	123	NM_001177810	223864	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.025000	0.626866	
mm_127773.1	chr15	3279469	3279669	-	1	NA	NA	NA	8592	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.020000	0.527363	
mm_148912.1	chr19	6974960	6975160	+	1	NA	NA	NA	12	NM_008889	18938	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.155000	0.796020	
mm_123397.1	chr14	63418728	63418928	-	1	NA	NA	NA	-1641	NM_007549	12143	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.000000	0.477612	81(CTTTATAAACTG,+,0.00)
mm_162718.1	chr10	35911091	35911291	+	1	NA	NA	NA	-595616	NM_001253355	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0.005000	0.373134	
mm_52565.1	chr6	116264106	116264306	+	1	NA	NA	NA	-13	NM_001309446	67492	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0.160000	0.736318	
mm_67013.1	chr7	65371149	65371349	-	1	NA	NA	NA	-5	NM_009386	21872	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.150000	0.756219	
mm_168266.1	chr10	93589501	93589701	-	1	NA	NA	NA	57	NM_027246	69878	Mm.259642	NM_027246	ENSMUSG00000020018	Snrpf	2010013O18Rik|SMF|sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding	0.145000	0.701493	
mm_56191.1	chr6	88627338	88627538	-	1	NA	NA	NA	10	NM_001278671	74589	Mm.196226	NM_029013	ENSMUSG00000033182	Kbtbd12	4833415F11Rik|4933428M03Rik|Klhdc6	kelch repeat and BTB (POZ) domain containing 12	protein-coding	0.090000	0.686567	-82(CTATTTATAGTG,+,0.00)
mm_134450.1	chr16	18400734	18400934	-	1	NA	NA	NA	8271	NM_001272032	11877	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velo-cardio-facial syndrome	protein-coding	0.010000	0.567164	
mm_61960.1	chr7	90302143	90302343	+	1	NA	NA	NA	-112	NM_001289583	83671	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	0.065000	0.572139	
mm_17388.1	chr2	27072043	27072243	-	1	NA	NA	NA	18	NM_025376	66139	Mm.330087	NM_025376	ENSMUSG00000009214	Tmem8c	1110002H13Rik|AI131587	transmembrane protein 8C	protein-coding	0.010000	0.542289	
mm_145256.1	chr18	52528934	52529134	+	1	NA	NA	NA	687	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.145000	0.736318	
mm_37231.1	chr4	117993873	117994073	-	1	NA	NA	NA	-64210	NM_001284192	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.005000	0.388060	
mm_106907.1	chr12	8015597	8015797	+	1	NA	NA	NA	38020	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.000000	0.308458	
mm_122876.1	chr14	54925909	54926109	-	1	NA	NA	NA	779	NM_010112	13644	Mm.236438	NM_010112	ENSMUSG00000022203	Efs	-	embryonal Fyn-associated substrate	protein-coding	0.095000	0.691542	
mm_106449.1	chr11	119937713	119937913	-	1	NA	NA	NA	-5279	NM_001037754	108100	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0.030000	0.582090	
mm_93885.1	chr10	125328362	125328562	-	1	NA	NA	NA	73	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.025000	0.497512	
mm_106443.1	chr11	119834375	119834575	-	1	NA	NA	NA	-110	NR_045312	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	0.030000	0.477612	
mm_1468.1	chr1	69826871	69827071	+	1	NA	NA	NA	1	NM_001271533	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	0.100000	0.701493	
mm_42467.1	chr5	115453859	115454059	+	1	NA	NA	NA	-12307	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.025000	0.597015	
mm_17698.1	chr2	32353197	32353397	-	1	NA	NA	NA	32	NM_001301737	13429	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	0.155000	0.756219	
mm_72019.1	chr8	70723973	70724173	+	1	NA	NA	NA	9	NM_201607	110385	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	0.015000	0.621891	
mm_49827.1	chr6	37806221	37806421	+	1	NA	NA	NA	-64490	NM_001272064	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.015000	0.557214	
mm_119935.1	chr14	54971809	54972009	+	1	NA	NA	NA	3122	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.000000	0.358209	
mm_90447.1	chr10	127668300	127668500	+	1	NA	NA	NA	1277	NR_045171	72243	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0.050000	0.611940	
mm_51116.1	chr6	67790925	67791125	+	1	NA	NA	NA	-225326	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.005000	0.447761	
mm_68011.1	chr7	100939862	100940062	-	1	NA	NA	NA	-7801	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.020000	0.517413	
mm_171174.1	chr3	3326761	3326961	+	1	NA	NA	NA	-181169	NM_013920	30942	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.030000	0.492537	
mm_58550.1	chr7	4690669	4690869	+	1	NA	NA	NA	-159	NM_001003920	381979	Mm.297064	NM_001003920	ENSMUSG00000035390	Brsk1	Gm1100|SAD-B|SADB	BR serine/threonine kinase 1	protein-coding	0.075000	0.781095	
mm_27674.1	chr3	65658828	65659028	-	1	NA	NA	NA	-360	NR_106200	102465905		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	0.090000	0.691542	
mm_157316.1	chrX	21089033	21089233	-	1	NA	NA	NA	96	NM_183185	245368	Mm.220470	NM_183185	ENSMUSG00000031079	Zfp300	D930016N04Rik	zinc finger protein 300	protein-coding	0.035000	0.462687	
mm_75743.1	chr8	69791091	69791291	-	1	NA	NA	NA	28	NM_133224	170759	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	0.075000	0.597015	
mm_106769.1	chr12	4593762	4593962	+	1	NA	NA	NA	854	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.025000	0.437811	-33(GGGTATATATAG,-,0.00),16(GCTTATTTAAGG,-,0.00)
mm_67793.1	chr7	97730551	97730751	-	1	NA	NA	NA	7596	NM_175105	66333	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.010000	0.537313	
mm_96702.1	chr11	69645074	69645274	+	1	NA	NA	NA	-9863	NM_009235	20670	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0.005000	0.437811	
mm_97575.1	chr11	78940211	78940411	+	1	NA	NA	NA	15020	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.552239	
mm_77416.1	chr8	120667943	120668143	-	1	NA	NA	NA	69	NM_010926	18117	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	0.155000	0.726368	
mm_74678.1	chr8	13974960	13975160	-	1	NA	NA	NA	-283	NM_173744	72148	Mm.5727	NM_173744	ENSMUSG00000050052	Tdrp	2610019F03Rik	testis development related protein	protein-coding	0.090000	0.661692	
mm_144650.1	chr18	34220811	34221011	+	1	NA	NA	NA	-73	NM_007462	11789	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	0.100000	0.711443	
mm_149614.1	chr19	16385859	16386059	+	1	NA	NA	NA	-49708	NM_008137	14675	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.000000	0.308458	
mm_145477.1	chr18	60376368	60376568	+	1	NA	NA	NA	439	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.582090	
mm_30936.1	chr4	32983399	32983599	+	1	NA	NA	NA	501	NM_027491	52187	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	0.115000	0.741294	
mm_154122.1	chr19	57197426	57197626	-	1	NA	NA	NA	105	NM_001103177	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.110000	0.661692	
mm_10449.1	chr2	14273486	14273686	+	1	NA	NA	NA	12583	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.005000	0.412935	
mm_164886.1	chr18	60807578	60807778	+	1	NA	NA	NA	3829	NM_010545	16149	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	0.020000	0.567164	
mm_2658.1	chr1	125677103	125677303	+	1	NA	NA	NA	207	NM_027677	71111	Mm.32727	NM_027677	ENSMUSG00000026343	Gpr39	4933415E13Rik	G protein-coupled receptor 39	protein-coding	0.040000	0.547264	
mm_31825.1	chr4	69691857	69692057	+	1	NA	NA	NA	718478	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.020000	0.383085	
mm_105486.1	chr11	105955751	105955951	-	1	NA	NA	NA	-11704	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.065000	0.537313	
mm_136001.1	chr16	75447012	75447212	-	1	NA	NA	NA	138949	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.010000	0.552239	-96(GCATTTAGAGCA,+,0.00)
mm_133042.1	chr16	57471242	57471442	+	1	NA	NA	NA	-77900	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.000000	0.398010	-85(GTATTTATAGAC,+,0.00)
mm_734.1	chr1	43445618	43445818	+	1	NA	NA	NA	-33	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.170000	0.845771	
mm_168153.1	chr10	41410232	41410432	-	1	NA	NA	NA	-40026	NM_001277229	268294	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	0.010000	0.487562	33(CCTTTTATAAGC,+,0.00),33(CCTTTTATAAGC,-,0.00)
mm_8935.1	chr1	164307160	164307360	-	1	NA	NA	NA	224	NM_001160209	66352	Mm.33285	NM_025505	ENSMUSG00000026577	Blzf1	1700030G05Rik|Blzf1l|Golgin-45|Jem-1	basic leucine zipper nuclear factor 1	protein-coding	0.050000	0.552239	
mm_117554.1	chr13	84347795	84347995	-	1	NA	NA	NA	125599	NM_175187	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	0.040000	0.492537	-100(GCTTAAAAGGTC,+,0.00)
mm_143209.1	chr17	62880778	62880978	-	1	NA	NA	NA	439	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.160000	0.791045	
mm_148153.1	chr18	77565100	77565300	-	1	NA	NA	NA	-64	NM_001164504	225743	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0.160000	0.800995	
mm_95065.1	chr11	32533222	32533422	+	1	NA	NA	NA	56	NM_009288	20868	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.140000	0.761194	
mm_72284.1	chr8	75109417	75109617	+	1	NA	NA	NA	8	NM_008566	17218	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0.100000	0.621891	
mm_85541.1	chr9	106682078	106682278	-	1	NA	NA	NA	3638	NM_011573	21767	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.010000	0.606965	
mm_59867.1	chr7	30184114	30184314	+	1	NA	NA	NA	43	NM_009944	12865	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	0.045000	0.621891	
mm_21075.1	chr2	152830472	152830672	-	1	NA	NA	NA	145	NM_001289716	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.060000	0.577114	
mm_71794.1	chr8	67494763	67494963	+	1	NA	NA	NA	-12	NM_001168577	17961	Mm.4695	NM_010874	ENSMUSG00000051147	Nat2	AV377607	N-acetyltransferase 2 (arylamine N-acetyltransferase)	protein-coding	0.020000	0.477612	
mm_162461.1	chr1	128712882	128713082	-	1	NA	NA	NA	-120683	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.020000	0.557214	
mm_10562.1	chr2	18048915	18049115	+	1	NA	NA	NA	-566	NM_028317	72668	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113	SKI/DACH domain containing 1	protein-coding	0.015000	0.442786	
mm_58268.1	chr6	145340689	145340889	-	1	NA	NA	NA	-46836	NR_003625	381827	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	0.105000	0.686567	
mm_115108.1	chr13	103396968	103397168	+	1	NA	NA	NA	-62576	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.020000	0.388060	
mm_142463.1	chr17	45599489	45599689	-	1	NA	NA	NA	14	NM_001199115	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.090000	0.711443	
mm_49526.1	chr6	29985262	29985462	+	1	NA	NA	NA	33	NR_040263	76419	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	0.105000	0.671642	
mm_49174.1	chr6	14901369	14901569	+	1	NA	NA	NA	120	NM_053242	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.120000	0.666667	
mm_118370.1	chr13	116876277	116876477	-	1	NA	NA	NA	149139	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.010000	0.303483	
mm_145490.1	chr18	60389715	60389915	+	1	NA	NA	NA	13786	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.373134	
mm_31591.1	chr4	57854623	57854823	+	1	NA	NA	NA	161	NM_001035533	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.040000	0.547264	
mm_33392.1	chr4	129814526	129814726	+	1	NA	NA	NA	-5853	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.000000	0.462687	-34(CCCCTTTAAAAG,-,0.00),-33(CCCTTTAAAAGA,-,0.00),-32(CCTTTAAAAGAC,+,0.00)
mm_123260.1	chr14	61258324	61258524	-	1	NA	NA	NA	66	NM_011892	24053	Mm.72173	NM_011892	ENSMUSG00000035296	Sgcg	35kDa|5430420E18Rik|AI642964|gamma-SG	sarcoglycan, gamma (dystrophin-associated glycoprotein)	protein-coding	0.025000	0.477612	
mm_52312.1	chr6	108828639	108828839	+	1	NA	NA	NA	98	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.125000	0.706468	
mm_76058.1	chr8	77724282	77724482	-	1	NA	NA	NA	70	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	0.055000	0.592040	
mm_91389.1	chr10	30655692	30655892	-	1	NA	NA	NA	75	NM_001111267	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.015000	0.537313	
mm_104669.1	chr11	97660224	97660424	-	1	NA	NA	NA	-3088	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.165000	0.825871	
mm_56605.1	chr6	112352891	112353091	-	1	NA	NA	NA	35032	NM_175525	243612	Mm.122653	NM_175525	ENSMUSG00000034387	Ssu2	D630042P16Rik|Fls485|Ssuh2	ssu-2 homolog (C. elegans)	protein-coding	0.005000	0.477612	
mm_142380.1	chr17	44736268	44736468	-	1	NA	NA	NA	-192	NM_001271631	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.125000	0.716418	
mm_71366.1	chr8	45746523	45746723	+	1	NA	NA	NA	72674	NR_045739	319940	Mm.441720	NR_045739	ENSMUSG00000085440	Sorbs2os	D330022K07Rik	sorbin and SH3 domain containing 2, opposite strand	ncRNA	0.015000	0.422886	
mm_73805.1	chr8	117328776	117328976	+	1	NA	NA	NA	-20294	NM_028941	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.020000	0.378109	
mm_115789.1	chr13	19337191	19337391	-	1	NA	NA	NA	58522	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.393035	
mm_18714.1	chr2	72442787	72442987	-	1	NA	NA	NA	-33332	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.025000	0.492537	
mm_28258.1	chr3	88570389	88570589	-	1	NA	NA	NA	-9182	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.010000	0.457711	
mm_164289.1	chr15	103755408	103755608	-	1	NA	NA	NA	-10	NR_126081	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.000000	0.437811	
mm_131760.1	chr16	22884179	22884379	+	1	NA	NA	NA	-7736	NR_075099	11625	Mm.197554	NM_013465	ENSMUSG00000022868	Ahsg	-	alpha-2-HS-glycoprotein	protein-coding	0.005000	0.457711	-35(TGGTATAAAAAG,-,0.00)
mm_17325.1	chr2	26502719	26502919	-	1	NA	NA	NA	1003	NM_008714	18128	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0.045000	0.517413	
mm_14359.1	chr2	129616142	129616342	+	1	NA	NA	NA	23073	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.025000	0.567164	
mm_167515.1	chr9	14614775	14614975	-	1	NA	NA	NA	125	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.095000	0.741294	
mm_168663.1	chr1	189277738	189277938	-	1	NA	NA	NA	65515	NM_001159850	16526	Mm.33304	NM_010607	ENSMUSG00000037624	Kcnk2	A430027H14Rik|AI848635|TREK-1	potassium channel, subfamily K, member 2	protein-coding	0.050000	0.487562	
mm_61083.1	chr7	51622215	51622415	+	1	NA	NA	NA	485	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.070000	0.512438	
mm_24843.1	chr3	95661944	95662144	+	1	NA	NA	NA	3323	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.010000	0.452736	-13(CCCTATAGAGTC,+,0.00)
mm_131749.1	chr16	22265994	22266194	+	1	NA	NA	NA	-89	NM_001330555	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding	0.085000	0.656716	
mm_21160.1	chr2	154569760	154569960	-	1	NA	NA	NA	32	NM_007891	13555	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|mKIAA4009	E2F transcription factor 1	protein-coding	0.155000	0.736318	
mm_168269.1	chr10	93792504	93792704	+	1	NA	NA	NA	-38951	NM_183199	327799	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.025000	0.462687	
mm_79846.1	chr9	64811435	64811635	+	1	NA	NA	NA	524	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.120000	0.731343	
mm_144852.1	chr18	36641523	36641723	+	1	NA	NA	NA	-22437	NM_201256	108112	Mm.24790	NM_201256	ENSMUSG00000090264	Eif4ebp3	4e-bp3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding	0.005000	0.407960	60(ATCTAGAAAAGG,-,0.00)
mm_132901.1	chr16	48871937	48872137	+	1	NA	NA	NA	-571	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.000000	0.417910	
mm_818.1	chr1	46425345	46425545	+	1	NA	NA	NA	-73	NM_001310335	100101919	Mm.383402	NM_001310335	ENSMUSG00000101337	Dnah7c	Dnahc7c	dynein, axonemal, heavy chain 7C	protein-coding	0.045000	0.547264	
mm_160016.1	chr6	129643243	129643443	-	1	NA	NA	NA	-55	NM_021378	58179	Mm.358684	NM_021378	ENSMUSG00000033027	Klrc3	Klrc2|Nkg2e	killer cell lectin-like receptor subfamily C, member 3	protein-coding	0.005000	0.427861	
mm_153226.1	chr19	34879107	34879307	-	1	NA	NA	NA	248	NM_001114339	75735	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	0.075000	0.626866	-51(CCCTTTAGGCTC,+,0.00)
mm_154637.1	chrX	7764157	7764357	+	1	NA	NA	NA	216	NM_001271491	209446	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	0.025000	0.557214	
mm_82552.1	chr9	20959689	20959889	-	1	NA	NA	NA	99	NM_001199432	13433	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0.010000	0.537313	
mm_66768.1	chr7	46732467	46732667	-	1	NA	NA	NA	36	NM_011316	20211	Mm.3489	NM_011316	ENSMUSG00000040017	Saa4	Saa-4|Saa-5	serum amyloid A 4	protein-coding	0.010000	0.492537	-57(GGATTTAAAAGC,-,0.00)
mm_67611.1	chr7	83884062	83884262	-	1	NA	NA	NA	179	NM_030705	80889	Mm.272998	NM_030705	ENSMUSG00000070462	Mesdc1	AW061151	mesoderm development candidate 1	protein-coding	0.120000	0.701493	
mm_40876.1	chr5	74195188	74195388	+	1	NA	NA	NA	-38	NM_026878	68939	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	0.120000	0.721393	
mm_147544.1	chr18	54496482	54496682	-	1	NA	NA	NA	74287	NR_040338	77433	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.010000	0.522388	
mm_65591.1	chr7	27328223	27328423	-	1	NA	NA	NA	5325	NM_001113549	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.040000	0.552239	
mm_77259.1	chr8	115707130	115707330	-	1	NA	NA	NA	-336	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.135000	0.746269	
mm_42447.1	chr5	115431930	115432130	+	1	NA	NA	NA	2345	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.025000	0.572139	
mm_36240.1	chr4	63171965	63172165	-	1	NA	NA	NA	66	NM_010616	16552	Mm.216057	NM_010616	ENSMUSG00000028357	Kif12	-	kinesin family member 12	protein-coding	0.010000	0.482587	
mm_169186.1	chr13	66027250	66027450	-	1	NA	NA	NA	-86103	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.000000	0.487562	
mm_31073.1	chr4	41369489	41369689	+	1	NA	NA	NA	20593	NM_023305	67123	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.000000	0.482587	
mm_57938.1	chr6	134792250	134792450	-	1	NA	NA	NA	278	NM_130447	70686	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	0.135000	0.701493	
mm_156108.1	chrX	114474233	114474433	+	1	NA	NA	NA	0	NM_001290478	237010	Mm.132583	NM_172781	ENSMUSG00000025597	Klhl4	B130014A11|C130018J01Rik	kelch-like 4	protein-coding	0.000000	0.442786	
mm_57471.1	chr6	125231698	125231898	-	1	NA	NA	NA	62	NM_145391	213233	Mm.296902	NM_145391	ENSMUSG00000038213	Tapbpl	BC017613|TAPBPL-R|Tapbplr	TAP binding protein-like	protein-coding	0.030000	0.542289	
mm_12315.1	chr2	69355521	69355721	+	1	NA	NA	NA	-13005	NM_021022	27413	Mm.439855	NM_021022	ENSMUSG00000027048	Abcb11	ABC16|Bsep|Lith1|PFIC2|PGY4|SPGP	ATP-binding cassette, sub-family B (MDR/TAP), member 11	protein-coding	0.000000	0.358209	
mm_46996.1	chr5	115341026	115341226	-	1	NA	NA	NA	35	NM_029645	384281	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	0.110000	0.686567	
mm_75838.1	chr8	70598333	70598533	-	1	NA	NA	NA	3952	NM_023627	71780	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.075000	0.661692	
mm_144638.1	chr18	32994876	32995076	+	1	NA	NA	NA	55935	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.010000	0.323383	
mm_427.1	chr1	34472669	34472869	+	1	NA	NA	NA	13023	NM_011206	19253	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.080000	0.706468	
mm_142653.1	chr17	47611128	47611328	-	1	NA	NA	NA	264	NM_016859	53414	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	0.060000	0.547264	
mm_100351.1	chr11	118428326	118428526	+	1	NA	NA	NA	-31	NM_001204129	56745	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.020000	0.577114	
mm_60595.1	chr7	44496598	44496798	+	1	NA	NA	NA	110	NM_028169	75538	Mm.258841	NM_028169	ENSMUSG00000051113	Fam71e1	0610007G24Rik|1700021N13Rik|1700021P22Rik|GARI-L5	family with sequence similarity 71, member E1	protein-coding	0.050000	0.601990	
mm_65018.1	chr7	17655833	17656033	-	1	NA	NA	NA	-16380	NR_002857	232919	Mm.153893	NR_002857	ENSMUSG00000108558	Psg-ps1	AV036018|Cea-6|Cea6	pregnancy specific glycoprotein pseudogene 1	pseudo	0.000000	0.467662	-36(CACTATAAGAGG,-,0.00)
mm_33439.1	chr4	130127587	130127787	+	1	NA	NA	NA	10864	NM_001163027	230777	Mm.246595	NM_198959	ENSMUSG00000028778	Hcrtr1	Ox1r|ox-1-R|ox1-R	hypocretin (orexin) receptor 1	protein-coding	0.015000	0.577114	
mm_26847.1	chr3	14767417	14767617	-	1	NA	NA	NA	10943	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.010000	0.432836	
mm_91646.1	chr10	42388229	42388429	-	1	NA	NA	NA	90236	NM_145743	215951	Mm.89646	NM_145743	ENSMUSG00000038302	Lace1	CG8520	lactation elevated 1	protein-coding	0.000000	0.398010	
mm_62886.1	chr7	114846232	114846432	+	1	NA	NA	NA	100566	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	0.020000	0.507463	
mm_90908.1	chr10	11491907	11492107	-	1	NA	NA	NA	-117217	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.085000	0.671642	
mm_6461.1	chr1	74028425	74028625	-	1	NA	NA	NA	95922	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.015000	0.393035	
mm_88762.1	chr10	80333911	80334111	+	1	NA	NA	NA	3866	NM_139292	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.070000	0.572139	
mm_46056.1	chr5	92215250	92215450	-	1	NA	NA	NA	58	NR_033483	57425	Mm.2548	NM_020562	ENSMUSG00000029409	U90926	-	cDNA sequence U90926	ncRNA	0.010000	0.338308	
mm_32694.1	chr4	116015696	116015896	+	1	NA	NA	NA	2106	NM_010173	14073	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	0.015000	0.442786	-42(CATTTTAGAGCC,+,0.00)
mm_14844.1	chr2	148098657	148098857	+	1	NA	NA	NA	-51788	NM_010446	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.010000	0.512438	
mm_158540.1	chrX	143933087	143933287	-	1	NA	NA	NA	32	NM_010025	13193	Mm.12871	NM_010025	ENSMUSG00000031285	Dcx	Dbct	doublecortin	protein-coding	0.005000	0.457711	
mm_76580.1	chr8	89012357	89012557	-	1	NA	NA	NA	-12278	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.030000	0.442786	
mm_45450.1	chr5	67608151	67608351	-	1	NA	NA	NA	368	NM_001033415	330096	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.105000	0.711443	
mm_33765.1	chr4	134397290	134397490	+	1	NA	NA	NA	-81	NM_001285872	100163	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	0.020000	0.592040	
mm_57925.1	chr6	134517348	134517548	-	1	NA	NA	NA	49465	NM_008514	16974	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	0.000000	0.298507	40(TGGTTTAAAAGA,-,0.00)
mm_14226.1	chr2	127425075	127425275	+	1	NA	NA	NA	-24	NM_001081089	215456	Mm.440454	NM_001081089	ENSMUSG00000046338	Gpat2	A530057A03Rik|Gm116|xGPAT1	glycerol-3-phosphate acyltransferase 2, mitochondrial	protein-coding	0.065000	0.641791	
mm_104678.1	chr11	97690251	97690451	-	1	NA	NA	NA	4399	NM_001085500	217149	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	0.025000	0.592040	
mm_12849.1	chr2	83644471	83644671	+	1	NA	NA	NA	-7	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.145000	0.726368	
mm_82728.1	chr9	25151571	25151771	-	1	NA	NA	NA	110	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.155000	0.805970	
mm_88172.1	chr10	69785521	69785721	+	1	NA	NA	NA	-139911	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.030000	0.462687	
mm_123870.1	chr14	72589708	72589908	-	1	NA	NA	NA	120195	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.025000	0.527363	
mm_165193.1	chr2	32385911	32386111	-	1	NA	NA	NA	1728	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.010000	0.532338	
mm_142583.1	chr17	46726219	46726419	-	1	NA	NA	NA	2846	NM_010321	14711	Mm.29395	NM_010321	ENSMUSG00000002769	Gnmt	-	glycine N-methyltransferase	protein-coding	0.055000	0.626866	
mm_102630.1	chr11	62539011	62539211	-	1	NA	NA	NA	150	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.165000	0.815920	
mm_172124.1	chr6	3201254	3201454	+	1	NA	NA	NA	-87165	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.065000	0.507463	
mm_65176.1	chr7	19692361	19692561	-	1	NA	NA	NA	198	NM_001110009	11812	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0.035000	0.567164	
mm_27544.1	chr3	57718212	57718412	-	1	NA	NA	NA	-17750	NM_001304456	24017	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0.030000	0.442786	
mm_19496.1	chr2	93453056	93453256	-	1	NA	NA	NA	337	NR_040533	100038525	Mm.440596	NR_040532	ENSMUSG00000075025	Gm10804	ENSMUSG00000075025	predicted gene 10804	ncRNA	0.010000	0.457711	-44(GGCTTTTAAAAA,-,0.00),-43(GCTTTTAAAAAC,+,0.00),-43(GCTTTTAAAAAC,-,0.00),-30(AACCATAAAAGA,-,0.00)
mm_16582.1	chr2	3649179	3649379	-	1	NA	NA	NA	-64179	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.015000	0.378109	
mm_154158.1	chr19	58455690	58455890	-	1	NA	NA	NA	-392	NM_010279	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.055000	0.651741	
mm_114736.1	chr13	83732269	83732469	+	1	NA	NA	NA	4263	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.030000	0.547264	
mm_96832.1	chr11	70000690	70000890	+	1	NA	NA	NA	164	NM_007888	13543	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0.125000	0.706468	
mm_97891.1	chr11	83298977	83299177	+	1	NA	NA	NA	-100	NM_134025	103737	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding	0.070000	0.616915	
mm_69023.1	chr7	126792261	126792461	-	1	NA	NA	NA	110	NM_019674	56420	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|Ppx	protein phosphatase 4, catalytic subunit	protein-coding	0.120000	0.741294	
mm_50818.1	chr6	54429586	54429786	+	1	NA	NA	NA	535	NR_033635	100042056	Mm.448157	NM_198118	ENSMUSG00000073067	9130019P16Rik	6430501H15Rik|OTTMUSG00000023151	RIKEN cDNA 9130019P16 gene	ncRNA	0.135000	0.751244	
mm_120967.1	chr14	77904426	77904626	+	1	NA	NA	NA	287	NM_029495	108670	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.040000	0.646766	
mm_82898.1	chr9	32702786	32702986	-	1	NA	NA	NA	6844	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.010000	0.527363	
mm_26574.1	chr3	146630539	146630739	+	1	NA	NA	NA	-11293	NR_045949	100286843	Mm.475299	NR_045949	ENSMUSG00000085810	Gm16325	OTTMUSG00000033652	predicted gene 16325	ncRNA	0.025000	0.457711	
mm_57749.1	chr6	129100815	129101015	-	1	NA	NA	NA	-12	NM_153506	232409	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0.000000	0.472637	-37(GTGTATAAAAGG,-,0.00)
mm_95289.1	chr11	45980164	45980364	+	1	NA	NA	NA	-46	NM_173384	214105	Mm.66708	NM_173384	ENSMUSG00000040489	Sox30	-	SRY (sex determining region Y)-box 30	protein-coding	0.105000	0.721393	
mm_113468.1	chr13	36263052	36263252	+	1	NA	NA	NA	145509	NM_001039189	69955	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.005000	0.457711	
mm_46146.1	chr5	93205616	93205816	-	1	NA	NA	NA	779	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.050000	0.567164	
mm_144172.1	chr18	6733641	6733841	+	1	NA	NA	NA	-31426	NM_181070	19330	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.005000	0.452736	
mm_68074.1	chr7	101869145	101869345	-	1	NA	NA	NA	1543	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.020000	0.542289	
mm_171116.1	chr3	138396845	138397045	+	1	NA	NA	NA	-18552	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding	0.040000	0.616915	
mm_60252.1	chr7	43780969	43781169	+	1	NA	NA	NA	15	NM_133712	69540	Mm.46421	NM_133712	ENSMUSG00000030693	Klk10	2300002A13Rik|NES1|PRSSL1	kallikrein related-peptidase 10	protein-coding	0.015000	0.597015	
mm_12516.1	chr2	72054885	72055085	+	1	NA	NA	NA	368	NM_001204166	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.020000	0.507463	
mm_82623.1	chr9	21804309	21804509	-	1	NA	NA	NA	5591	NR_106051	102465657		NR_106051	ENSMUSG00000098473	Mir7083	Gm27888|mmu-mir-7083	microRNA 7083	ncRNA	0.015000	0.597015	
mm_154428.1	chrM	432	632	-	1	NA	NA	NA	NA	NA									0.015000	0.353234	
mm_23861.1	chr3	83012672	83012872	+	1	NA	NA	NA	5048	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.050000	0.557214	
mm_120847.1	chr14	75202577	75202777	+	1	NA	NA	NA	-39610	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.025000	0.432836	
mm_95618.1	chr11	53519873	53520073	+	1	NA	NA	NA	237	NM_001347496	20362	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0.135000	0.741294	
mm_147316.1	chr18	41998949	41999149	-	1	NA	NA	NA	0	NM_001033426	332309	Mm.240520	NM_001033426	ENSMUSG00000073574	Grxcr2	Gm851	glutaredoxin, cysteine rich 2	protein-coding	0.025000	0.457711	
mm_58686.1	chr7	12834913	12835113	+	1	NA	NA	NA	203	NM_022981	65020	Mm.292297	NM_022981	ENSMUSG00000058638	Zfp110	2900024E01Rik|N28112|NRIF|Nrif1	zinc finger protein 110	protein-coding	0.115000	0.626866	
mm_79328.1	chr9	53321649	53321849	+	1	NA	NA	NA	20079	NM_176846	320051	Mm.277540	NM_176846	ENSMUSG00000034584	Exph5	AC079869.22gm5|B130009M24Rik|E030050P12|Kiaa0624|Slac2b|slac2-b	exophilin 5	protein-coding	0.010000	0.452736	
mm_153139.1	chr19	34246052	34246252	-	1	NA	NA	NA	9221	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.035000	0.562189	
mm_57029.1	chr6	122283136	122283336	-	1	NA	NA	NA	-403	NM_016970	50928	Mm.20434	NM_016970	ENSMUSG00000030114	Klrg1	2F1-Ag|MAFA|MAFA-L	killer cell lectin-like receptor subfamily G, member 1	protein-coding	0.015000	0.472637	
mm_143840.1	chr17	84125920	84126120	-	1	NA	NA	NA	47360	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.010000	0.557214	
mm_10242.1	chr2	8946850	8947050	+	1	NA	NA	NA	-242565	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.010000	0.388060	
mm_103645.1	chr11	78965950	78966150	-	1	NA	NA	NA	18874	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.010000	0.517413	
mm_54474.1	chr6	34910743	34910943	-	1	NA	NA	NA	-12	NM_001013366	101240	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.135000	0.701493	
mm_16950.1	chr2	17201990	17202190	-	1	NA	NA	NA	-188364	NR_040632	75069	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	0.010000	0.517413	
mm_114523.1	chr13	73330920	73331120	+	1	NA	NA	NA	11	NM_053163	94066	Mm.26775	NM_053163	ENSMUSG00000021607	Mrpl36	AI646041	mitochondrial ribosomal protein L36	protein-coding	0.075000	0.611940	
mm_110072.1	chr12	21417267	21417467	-	1	NA	NA	NA	69	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.145000	0.771144	
mm_60733.1	chr7	45434783	45434983	+	1	NA	NA	NA	44	NM_030678	14936	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0.070000	0.646766	
mm_77507.1	chr8	122752095	122752295	-	1	NA	NA	NA	-23291	NM_144932	257633	Mm.334875	NM_144932	ENSMUSG00000015016	Acsf3	BB101783	acyl-CoA synthetase family member 3	protein-coding	0.060000	0.626866	
mm_118324.1	chr13	113617539	113617739	-	1	NA	NA	NA	925	NM_130796	170625	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.060000	0.621891	
mm_80997.1	chr9	103423473	103423673	+	1	NA	NA	NA	-5	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.025000	0.482587	
mm_152748.1	chr19	19110845	19111045	-	1	NA	NA	NA	251	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.020000	0.437811	40(TTTTTTAAAGCA,+,0.00)
mm_112808.1	chr13	20794054	20794254	+	1	NA	NA	NA	41	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.472637	
mm_42605.1	chr5	117780946	117781146	+	1	NA	NA	NA	-85793	NM_008712	18125	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.040000	0.691542	
mm_45571.1	chr5	73338510	73338710	-	1	NA	NA	NA	337	NM_026950	433904	Mm.274892	NM_026950	ENSMUSG00000029153	Ociad2	1810027I20Rik	OCIA domain containing 2	protein-coding	0.040000	0.582090	
mm_91328.1	chr10	25220784	25220984	-	1	NA	NA	NA	-20714	NM_001347460	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.005000	0.407960	
mm_42052.1	chr5	108629939	108630139	+	1	NA	NA	NA	229	NM_028223	72392	Mm.258324	NM_028223	ENSMUSG00000013495	Tmem175	3010001K23Rik|AI504381|mTMEM175	transmembrane protein 175	protein-coding	0.085000	0.666667	
mm_56244.1	chr6	90731358	90731558	-	1	NA	NA	NA	-14929	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.015000	0.616915	
mm_39099.1	chr4	154919831	154920031	-	1	NA	NA	NA	8146	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.005000	0.368159	
mm_21526.1	chr2	163643205	163643405	-	1	NA	NA	NA	-1545	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.020000	0.452736	
mm_109870.1	chr12	4916037	4916237	-	1	NA	NA	NA	-1216	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.005000	0.363184	
mm_109817.1	chr12	3646295	3646495	-	1	NA	NA	NA	73354	NM_007886	13528	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.025000	0.462687	-52(TGCTTTAAAAGT,-,0.00),-51(GCTTTAAAAGTC,+,0.00)
mm_131273.1	chr16	11008841	11009041	+	1	NA	NA	NA	43	NR_040518	100043147	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.030000	0.562189	
mm_22643.1	chr3	14864214	14864414	+	1	NA	NA	NA	776	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.000000	0.452736	
mm_86819.1	chr10	20952399	20952599	+	1	NA	NA	NA	-48	NM_026203	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.125000	0.731343	
mm_102824.1	chr11	69059378	69059578	-	1	NA	NA	NA	-297	NM_028005	71923	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.095000	0.651741	-51(GGGTCTTAAAAG,-,0.00),-50(GGTCTTAAAAGA,-,0.00)
mm_161380.1	chr14	70554048	70554248	+	1	NA	NA	NA	92	NM_021877	15460	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	0.060000	0.726368	
mm_50732.1	chr6	52570341	52570541	+	1	NA	NA	NA	69859	NM_145567	58875	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	0.005000	0.492537	
mm_98349.1	chr11	93378403	93378603	+	1	NA	NA	NA	279213	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	0.000000	0.378109	
mm_145804.1	chr18	65381986	65382186	+	1	NA	NA	NA	11802	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.025000	0.497512	
mm_100330.1	chr11	118244137	118244337	+	1	NA	NA	NA	4355	NM_001112699	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.010000	0.427861	
mm_13984.1	chr2	121509733	121509933	+	1	NA	NA	NA	3110	NM_001290986	241627	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	0.050000	0.621891	
mm_8810.1	chr1	161876744	161876944	-	1	NA	NA	NA	-183	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.105000	0.691542	
mm_101105.1	chr11	11932159	11932359	-	1	NA	NA	NA	-34115	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.005000	0.507463	
mm_71138.1	chr8	39045884	39046084	+	1	NA	NA	NA	40117	NM_030254	80286	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	0.005000	0.527363	
mm_11981.1	chr2	55292878	55293078	+	1	NA	NA	NA	-142992	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.010000	0.497512	
mm_164762.1	chr17	85618466	85618666	-	1	NA	NA	NA	-170	NR_038082	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.075000	0.636816	
mm_134467.1	chr16	18426496	18426696	-	1	NA	NA	NA	120	NM_007744	12846	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.115000	0.721393	
mm_83828.1	chr9	54068281	54068481	-	1	NA	NA	NA	30	NM_001033535	244882	Mm.325589	NM_001033535	ENSMUSG00000074345	Tnfaip8l3	9930029P06Rik|Gm517	tumor necrosis factor, alpha-induced protein 8-like 3	protein-coding	0.095000	0.741294	
mm_45588.1	chr5	74262616	74262816	-	1	NA	NA	NA	67390	NM_026878	68939	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	0.015000	0.542289	
mm_109738.1	chr12	117154061	117154261	+	1	NA	NA	NA	-2892	NR_033538	100038689	Mm.445351	NR_033538	ENSMUSG00000099907	Gm10421	ENSMUSG00000072792	predicted gene 10421	ncRNA	0.090000	0.656716	
mm_5598.1	chr1	39563947	39564147	-	1	NA	NA	NA	13300	NM_001033135	67702	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4|OTTMUSG00000026591	ring finger protein 149	protein-coding	0.015000	0.462687	
mm_79546.1	chr9	57911045	57911245	+	1	NA	NA	NA	159	NM_001122873	69459	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0.055000	0.577114	
mm_62432.1	chr7	101361884	101362084	+	1	NA	NA	NA	13915	NM_001040111	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.010000	0.597015	
mm_93724.1	chr10	119239887	119240087	-	1	NA	NA	NA	68	NM_027994	71902	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	0.120000	0.731343	
mm_162101.1	chrX	37831493	37831693	+	1	NA	NA	NA	-93	NM_001025086	547168	Mm.391251	NM_001025086	ENSMUSG00000071767	Rhox7a	Gm712|Rhox7	reproductive homeobox 7A	protein-coding	0.010000	0.567164	
mm_19683.1	chr2	103454630	103454830	-	1	NA	NA	NA	30423	NM_009804	12359	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0.065000	0.542289	
mm_26107.1	chr3	137341085	137341285	+	1	NA	NA	NA	107	NM_016885	59308	Mm.27343	NM_016885	ENSMUSG00000054690	Emcn	0610012K22Rik|AI315669|Muc14	endomucin	protein-coding	0.025000	0.507463	
mm_105578.1	chr11	106613277	106613477	-	1	NA	NA	NA	-447	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.025000	0.492537	
mm_142064.1	chr17	35673644	35673844	-	1	NA	NA	NA	-1	NM_010364	14885	Mm.10182	NM_010364	ENSMUSG00000001524	Gtf2h4	AW545633|BTF2 p52|p52	general transcription factor II H, polypeptide 4	protein-coding	0.020000	0.487562	
mm_135152.1	chr16	35857716	35857916	-	1	NA	NA	NA	13566	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.010000	0.417910	
mm_166059.1	chr4	133378659	133378859	+	1	NA	NA	NA	8983	NR_039582	100628620		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	0.000000	0.512438	
mm_155469.1	chrX	73639325	73639525	+	1	NA	NA	NA	-16	NM_029352	75590	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	0.080000	0.686567	
mm_49062.1	chr6	5390346	5390546	+	1	NA	NA	NA	7060	NM_023048	65255	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0.035000	0.462687	
mm_190.1	chr1	15803144	15803344	+	1	NA	NA	NA	-2402	NM_009352	21749	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	0.000000	0.487562	
mm_137926.1	chr17	32521633	32521833	+	1	NA	NA	NA	-14896	NM_024442	70101	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0.010000	0.398010	
mm_19493.1	chr2	93424573	93424773	-	1	NA	NA	NA	-2666	NR_105967	102465605		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	0.010000	0.542289	
mm_156879.1	chrX	166238808	166239008	+	1	NA	NA	NA	-35	NM_001177961	14758	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	0.095000	0.741294	
mm_28942.1	chr3	98893127	98893327	-	1	NA	NA	NA	3	NM_019545	56185	Mm.281874	NM_019545	ENSMUSG00000027870	Hao2	AI325478|Hao-2|Hao3|Haox3	hydroxyacid oxidase 2	protein-coding	0.010000	0.373134	
mm_136980.1	chr17	16889159	16889359	+	1	NA	NA	NA	-174844	NM_001005358	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	0.025000	0.452736	
mm_144514.1	chr18	24709388	24709588	+	1	NA	NA	NA	865	NM_001289655	225288	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0.140000	0.825871	
mm_103032.1	chr11	69735294	69735494	-	1	NA	NA	NA	23239	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.010000	0.577114	
mm_63827.1	chr7	134852892	134853092	+	1	NA	NA	NA	85438	NM_001143802	627214	Mm.323610	NM_001143802	ENSMUSG00000073805	Fam196a	B830028B13Rik	family with sequence similarity 196, member A	protein-coding	0.015000	0.417910	
mm_98609.1	chr11	95842240	95842440	+	1	NA	NA	NA	45	NM_001284393	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.020000	0.592040	
mm_114509.1	chr13	71104704	71104904	+	1	NA	NA	NA	-2285	NR_130325	100316804		NR_130325	ENSMUSG00000080580	Mir466f-4	Mirn466f-4|mmu-mir-466f-4	microRNA 466f-4	ncRNA	0.035000	0.507463	
mm_160951.1	chr11	97351966	97352166	-	1	NA	NA	NA	7	NM_001081220	217143	Mm.32622	NM_175453	ENSMUSG00000070337	Gpr179	5330439C02Rik|Gpr158l1	G protein-coupled receptor 179	protein-coding	0.000000	0.572139	
mm_51687.1	chr6	86525335	86525535	+	1	NA	NA	NA	730	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.075000	0.651741	
mm_15747.1	chr2	164237426	164237626	+	1	NA	NA	NA	815	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.005000	0.442786	
mm_34997.1	chr4	156109933	156110133	+	1	NA	NA	NA	35	NM_177205	230996	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	0.110000	0.706468	
mm_25004.1	chr3	97651909	97652109	+	1	NA	NA	NA	-6203	NM_182997	108097	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.000000	0.452736	
mm_3427.1	chr1	150099647	150099847	+	1	NA	NA	NA	127	NR_015466	320019	Mm.353072	NR_015466	ENSMUSG00000097028	Ptgs2os	7530420F21Rik	prostaglandin-endoperoxide synthase 2, opposite strand	ncRNA	0.055000	0.616915	6(GCTTTTAGGCCC,+,0.00)
mm_40303.1	chr5	43711471	43711671	+	1	NA	NA	NA	49192	NM_172274	231214	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	0.020000	0.537313	-56(CTCTTTATGGGC,+,0.00)
mm_62574.1	chr7	104314899	104315099	+	1	NA	NA	NA	-32	NR_040749	622070	Mm.486406	NR_040749	ENSMUSG00000087175	Gm15133	OTTMUSG00000019186	predicted gene 15133	ncRNA	0.030000	0.437811	
mm_80064.1	chr9	69454000	69454200	+	1	NA	NA	NA	417	NM_007585	12306	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	0.055000	0.611940	
mm_37463.1	chr4	123473045	123473245	-	1	NA	NA	NA	-61234	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.010000	0.393035	-92(TCATTTATGGCC,+,0.00)
mm_24466.1	chr3	90654072	90654272	+	1	NA	NA	NA	-130	NM_199422	381493	Mm.291525	NM_199422	ENSMUSG00000063767	S100a7a	AY465109|Gm1020|S100A7L1|S100A7f|S100a15|S100a15a|S100a17l1	S100 calcium binding protein A7A	protein-coding	0.010000	0.507463	
mm_82531.1	chr9	20726875	20727075	-	1	NA	NA	NA	1239	NM_173777	244723	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.125000	0.746269	-34(CGCCTTATAAAG,-,0.00),-32(CCTTATAAAGCT,+,0.00)
mm_145292.1	chr18	53250832	53251032	+	1	NA	NA	NA	5270	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.015000	0.402985	
mm_73614.1	chr8	110117527	110117727	+	1	NA	NA	NA	37893	NM_175480	234725	Mm.87487	NM_175480	ENSMUSG00000044676	Zfp612	B230354B21Rik	zinc finger protein 612	protein-coding	0.015000	0.547264	
mm_102538.1	chr11	61266980	61267180	-	1	NA	NA	NA	106	NM_001331114	11671	Mm.398221	NM_007437	ENSMUSG00000010025	Aldh3a2	AI194803|Ahd-3|Ahd-3r|Ahd3|Ahd3-r|Aldh4|Aldh4-r|FALDH	aldehyde dehydrogenase family 3, subfamily A2	protein-coding	0.060000	0.641791	
mm_157473.1	chrX	48034750	48034950	-	1	NA	NA	NA	3	NM_013912	30878	Mm.29262	NM_013912	ENSMUSG00000037010	Apln	6030430G11Rik|Apel	apelin	protein-coding	0.055000	0.606965	
mm_34432.1	chr4	145863982	145864182	+	1	NA	NA	NA	26863	NR_033612	236069	Mm.276881	NR_033612	ENSMUSG00000096233	Gm13238	OTTMUSG00000011065	carnitine deficiency-associated gene expressed in ventricle 3 pseudogene	pseudo	0.025000	0.497512	
mm_105003.1	chr11	100374276	100374476	-	1	NA	NA	NA	-18235	NM_010404	15114	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.045000	0.646766	
mm_90141.1	chr10	118098150	118098350	+	1	NA	NA	NA	-43537	NM_001162904	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.000000	0.482587	
mm_83792.1	chr9	52172571	52172771	-	1	NA	NA	NA	-4560	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.020000	0.462687	
mm_133185.1	chr16	72663022	72663222	+	1	NA	NA	NA	-27	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.060000	0.601990	-35(CCCCTTTAAAGG,-,0.00),-34(CCCTTTAAAGGT,+,0.00),-34(CCCTTTAAAGGT,-,0.00),-33(CCTTTAAAGGTT,+,0.00)
mm_135548.1	chr16	49801556	49801756	-	1	NA	NA	NA	-53998	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.010000	0.457711	28(CCTCTTAGAGCA,+,0.00)
mm_168205.1	chr10	70378567	70378767	+	1	NA	NA	NA	-62001	NM_001143777	71721	Mm.477813	NM_024244	ENSMUSG00000043259	Fam13c	1200015N20Rik|C030038O19Rik|mKIAA1796	family with sequence similarity 13, member C	protein-coding	0.000000	0.502488	
mm_44730.1	chr5	31048156	31048356	-	1	NA	NA	NA	-177	NM_177870	330064	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	0.090000	0.731343	
mm_153348.1	chr19	39740914	39741114	-	1	NA	NA	NA	87	NM_001039555	433247	Mm.335660	NM_001039555	ENSMUSG00000074882	Cyp2c68	9030012A22Rik	cytochrome P450, family 2, subfamily c, polypeptide 68	protein-coding	0.005000	0.472637	
mm_140591.1	chr17	10244820	10245020	-	1	NA	NA	NA	74441	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.000000	0.298507	79(TCTTTTAAGTGC,+,0.00)
mm_81466.1	chr9	109875508	109875708	+	1	NA	NA	NA	29	NM_007658	12530	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	0.065000	0.567164	
mm_122883.1	chr14	54944657	54944857	-	1	NA	NA	NA	4385	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.005000	0.412935	
mm_2385.1	chr1	93479116	93479316	+	1	NA	NA	NA	155	NM_001159719	18000	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	0.085000	0.686567	
mm_112824.1	chr13	20803023	20803223	+	1	NA	NA	NA	9010	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.557214	
mm_68218.1	chr7	104410133	104410333	-	1	NA	NA	NA	-51587	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.005000	0.427861	-51(ATGTTTAAAAGC,-,0.00)
mm_35859.1	chr4	49473812	49474012	-	1	NA	NA	NA	-22803	NM_001164565	230161	Mm.30101	NM_001164565	ENSMUSG00000070985	Acnat1	AI132189	acyl-coenzyme A amino acid N-acyltransferase 1	protein-coding	0.000000	0.487562	
mm_70558.1	chr8	13073866	13074066	+	1	NA	NA	NA	13058	NM_025834	66901	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.025000	0.427861	
mm_48578.1	chr5	143506025	143506225	-	1	NA	NA	NA	21868	NM_009007	19353	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	RAS-related C3 botulinum substrate 1	protein-coding	0.035000	0.482587	
mm_170532.1	chr19	3756128	3756328	-	1	NA	NA	NA	-11193	NM_001167889	225888	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0.035000	0.487562	-28(CTTTAAATACCC,+,0.00)
mm_147988.1	chr18	67610787	67610987	-	1	NA	NA	NA	30449	NM_001081073	225659	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0.185000	0.830846	
mm_156488.1	chrX	144335951	144336151	+	1	NA	NA	NA	18085	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.015000	0.472637	
mm_159640.1	chr4	141685646	141685846	-	1	NA	NA	NA	-30	NM_023544	69994	Mm.441022	NM_023544	ENSMUSG00000040715	Rsc1a1	1700027M01Rik|OTTMUSG00000010365|Rs1	regulatory solute carrier protein, family 1, member 1	protein-coding	0.000000	0.333333	
mm_79421.1	chr9	55326870	55327070	+	1	NA	NA	NA	21	NM_172923	244886	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.120000	0.805970	
mm_167837.1	chr9	124424562	124424762	-	1	NA	NA	NA	875	NR_015516	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.105000	0.641791	
mm_53298.1	chr6	129045800	129046000	+	1	NA	NA	NA	-1	NR_024262	232408	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.005000	0.447761	
mm_40734.1	chr5	66215683	66215883	+	1	NA	NA	NA	-24448	NR_040695	73639	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA	0.020000	0.582090	
mm_12052.1	chr2	59222112	59222312	+	1	NA	NA	NA	61362	NM_175464	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.000000	0.393035	
mm_144484.1	chr18	23999249	23999449	+	1	NA	NA	NA	9715	NM_011755	22694	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	0.000000	0.393035	
mm_82252.1	chr9	4795950	4796150	-	1	NA	NA	NA	184	NM_001113180	14802	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.035000	0.606965	36(GGGCATAAAAAG,-,0.00)
mm_105380.1	chr11	103267310	103267510	-	1	NA	NA	NA	-9	NM_016896	53859	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.105000	0.706468	
mm_132621.1	chr16	38828804	38829004	+	1	NA	NA	NA	-155	NM_029042	74663	Mm.50263	NM_029042	ENSMUSG00000022798	4930435E12Rik	TSCPA	RIKEN cDNA 4930435E12 gene	protein-coding	0.005000	0.492537	
mm_29976.1	chr3	133663295	133663495	-	1	NA	NA	NA	-119005	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.015000	0.457711	
mm_25828.1	chr3	128610883	128611083	+	1	NA	NA	NA	-379378	NR_045704	402774	Mm.209170	NR_045704	ENSMUSG00000105816	D030025E07Rik	-	RIKEN cDNA D030025E07 gene	ncRNA	0.020000	0.552239	
mm_8332.1	chr1	150069860	150070060	-	1	NA	NA	NA	-17758	NR_106112	102465760		NR_106112	ENSMUSG00000098906	Mir7652	Gm27932|mmu-mir-7652	microRNA 7652	ncRNA	0.010000	0.338308	68(GCATATATGGAG,+,0.00)
mm_51886.1	chr6	90601899	90602099	+	1	NA	NA	NA	-2881	NM_027868	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.020000	0.606965	
mm_158274.1	chrX	111462972	111463172	-	1	NA	NA	NA	74887	NM_025949	67071	Mm.37617	NM_025949	ENSMUSG00000025665	Rps6ka6	2610524K04Rik|RSK4|S6K-alpha-6	ribosomal protein S6 kinase polypeptide 6	protein-coding	0.080000	0.666667	
mm_50337.1	chr6	48508244	48508444	+	1	NA	NA	NA	4005	NR_027808	58894	Mm.31983	NR_015597	ENSMUSG00000107476	Zfp862-ps	4732460K03Rik|AI448302|Zfp862|mKIAA0543	zinc finger protein 862, pseudogene	pseudo	0.020000	0.512438	
mm_29038.1	chr3	102782573	102782773	-	1	NA	NA	NA	41	NM_009432	22094	Mm.110730	NM_009432	ENSMUSG00000027857	Tshb	-	thyroid stimulating hormone, beta subunit	protein-coding	0.010000	0.393035	
mm_10537.1	chr2	16438206	16438406	+	1	NA	NA	NA	82002	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.005000	0.358209	-19(CTTTTTAGAGTT,+,0.00)
mm_139249.1	chr17	47734218	47734418	+	1	NA	NA	NA	-2719	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.025000	0.601990	
mm_48410.1	chr5	140261684	140261884	-	1	NA	NA	NA	59768	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.005000	0.452736	
mm_35177.1	chr4	15148928	15149128	-	1	NA	NA	NA	103	NM_178617	69352	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	0.090000	0.701493	
mm_135338.1	chr16	42340434	42340634	-	1	NA	NA	NA	117	NM_008083	14432	Mm.1222	NM_008083	ENSMUSG00000047261	Gap43	B-50|Basp2|GAP-43	growth associated protein 43	protein-coding	0.030000	0.517413	
mm_120932.1	chr14	76504117	76504317	+	1	NA	NA	NA	-9	NM_001310647	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.070000	0.592040	
mm_169898.1	chr16	49293589	49293789	+	1	NA	NA	NA	236203	NM_001166210	667772	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0.025000	0.527363	-30(CCCCTTATAAGC,-,0.00),-28(CCTTATAAGCAC,+,0.00)
mm_51215.1	chr6	71352936	71353136	+	1	NA	NA	NA	-20391	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.020000	0.482587	-45(CTTTCTAAAAGC,-,0.00)
mm_43566.1	chr5	137633471	137633671	+	1	NA	NA	NA	4448	NR_033148	100316903	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0.020000	0.557214	
mm_155174.1	chrX	53607836	53608036	+	1	NA	NA	NA	14	NM_028375	72865	Mm.158897	NM_028375	ENSMUSG00000051851	Cxx1c	2900027G03Rik|Mar8.1|Mart8a	CAAX box 1C	protein-coding	0.025000	0.597015	
mm_51149.1	chr6	70671673	70671873	+	1	NA	NA	NA	120402	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.492537	-43(GCTTCTTTAAGG,-,0.00)
mm_133490.1	chr16	90283125	90283325	+	1	NA	NA	NA	1278	NM_178923	224432	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.025000	0.452736	-78(GCGTTTTAAAGC,-,0.00),37(GCTTTAAGGCGG,+,0.00)
mm_15889.1	chr2	164879278	164879478	+	1	NA	NA	NA	10	NM_146129	228866	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	0.130000	0.711443	
mm_138186.1	chr17	34268565	34268765	+	1	NA	NA	NA	5438	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.005000	0.552239	
mm_120863.1	chr14	75229441	75229641	+	1	NA	NA	NA	-12746	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.010000	0.348259	
mm_86001.1	chr9	112232277	112232477	-	1	NA	NA	NA	124	NM_001177616	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.025000	0.512438	
mm_26587.1	chr3	151294111	151294311	+	1	NA	NA	NA	-143671	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.045000	0.557214	
mm_22968.1	chr3	32708158	32708358	+	1	NA	NA	NA	-288	NM_019673	56456	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0.020000	0.502488	
mm_21597.1	chr2	164237725	164237925	-	1	NA	NA	NA	516	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.030000	0.517413	
mm_153202.1	chr19	34629782	34629982	-	1	NA	NA	NA	10861	NM_053217	112419	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	0.005000	0.437811	-60(GCTTATATGAGG,+,0.00)
mm_110292.1	chr12	32208266	32208466	-	1	NA	NA	NA	-28	NM_001146201	30955	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphoinositide-3-kinase, catalytic, gamma polypeptide	protein-coding	0.050000	0.532338	
mm_38281.1	chr4	136890039	136890239	-	1	NA	NA	NA	2775	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.035000	0.567164	
mm_73344.1	chr8	105348077	105348277	+	1	NA	NA	NA	-81	NM_001081332	277973	Mm.334766	NM_001081332	ENSMUSG00000014786	Slc9a5	Gm696	solute carrier family 9 (sodium/hydrogen exchanger), member 5	protein-coding	0.045000	0.567164	
mm_51607.1	chr6	84154626	84154826	+	1	NA	NA	NA	135340	NM_021469	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.000000	0.517413	
mm_48843.1	chr5	149367021	149367221	-	1	NA	NA	NA	-44685	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.005000	0.492537	
mm_154315.1	chrM	997	1197	+	1	NA	NA	NA	NA	NA									0.005000	0.338308	
mm_82229.1	chr9	3029311	3029511	-	1	NA	NA	NA	9332	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.010000	0.358209	
mm_72726.1	chr8	85071627	85071827	+	1	NA	NA	NA	-30	NM_001039514	330817	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	0.090000	0.646766	
mm_5645.1	chr1	40516350	40516550	-	1	NA	NA	NA	1088	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.015000	0.417910	
mm_45969.1	chr5	90468541	90468741	-	1	NA	NA	NA	7771	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.502488	
mm_162949.1	chr11	3353282	3353482	-	1	NA	NA	NA	2759	NM_001034030	16886	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.040000	0.636816	
mm_67388.1	chr7	79842482	79842682	-	1	NA	NA	NA	-230	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.015000	0.606965	
mm_20748.1	chr2	140065736	140065936	-	1	NA	NA	NA	969	NM_001159640	75812	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0.030000	0.517413	
mm_134161.1	chr16	10791635	10791835	-	1	NA	NA	NA	370	NM_008933	19119	Mm.325769	NM_008933	ENSMUSG00000038015	Prm2	AI528784|Prm-2	protamine 2	protein-coding	0.045000	0.606965	
mm_21899.1	chr2	166156074	166156274	-	1	NA	NA	NA	-491	NM_028072	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.055000	0.467662	
mm_95808.1	chr11	55110115	55110315	+	1	NA	NA	NA	12230	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.010000	0.452736	
mm_75976.1	chr8	72136707	72136907	-	1	NA	NA	NA	1515	NM_001001491	326618	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	0.020000	0.482587	-36(TCCCTTATAAGG,-,0.00),-34(CCTTATAAGGTA,+,0.00)
mm_69742.1	chr7	140952083	140952283	-	1	NA	NA	NA	-1944	NM_053088	73835	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	0.005000	0.402985	
mm_31057.1	chr4	41191103	41191303	+	1	NA	NA	NA	55182	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.000000	0.323383	
mm_30725.1	chr4	13751247	13751447	+	1	NA	NA	NA	50	NM_001111027	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.060000	0.567164	
mm_120991.1	chr14	79301102	79301302	+	1	NA	NA	NA	433	NM_025427	66214	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	0.090000	0.616915	
mm_101829.1	chr11	47379225	47379425	-	1	NA	NA	NA	-23	NM_011891	24052	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.045000	0.641791	
mm_99471.1	chr11	102436077	102436277	+	1	NA	NA	NA	5855	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.020000	0.557214	
mm_91005.1	chr10	14545355	14545555	-	1	NA	NA	NA	-419	NM_001002268	215798	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.100000	0.751244	
mm_4232.1	chr1	171370022	171370222	+	1	NA	NA	NA	-51	NM_027893	71740	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	0.010000	0.542289	-5(TTCTCTTTAAGG,-,0.00)
mm_105771.1	chr11	109676062	109676262	-	1	NA	NA	NA	25241	NM_001313976	19084	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.020000	0.577114	
mm_129419.1	chr15	78395807	78396007	-	1	NA	NA	NA	5	NM_028522	73376	Mm.73222	NM_028522	ENSMUSG00000062154	Tex33	1700061J05Rik|Ean57	testis expressed 33	protein-coding	0.005000	0.542289	
mm_83715.1	chr9	50752261	50752461	-	1	NA	NA	NA	-7	NM_024441	69253	Mm.1980	NM_024441	ENSMUSG00000038086	Hspb2	27kDa|2810021G24Rik|HSP27|MKBP	heat shock protein 2	protein-coding	0.025000	0.611940	
mm_77198.1	chr8	112032250	112032450	-	1	NA	NA	NA	20991	NM_020584	57321	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	0.020000	0.492537	-38(CTCCTGAAAAGG,-,0.00)
mm_17338.1	chr2	26596271	26596471	-	1	NA	NA	NA	-4951	NR_106155	102465787		NR_106155	ENSMUSG00000105799	Mir126b	mmu-mir-126b	microRNA 126b	ncRNA	0.030000	0.532338	
mm_132000.1	chr16	25410647	25410847	+	1	NA	NA	NA	123930	NM_175165	71338	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding	0.010000	0.452736	
mm_49557.1	chr6	30551362	30551562	+	1	NA	NA	NA	9820	NM_001024698	232680	Mm.268855	NM_001024698	ENSMUSG00000071553	Cpa2	-	carboxypeptidase A2, pancreatic	protein-coding	0.000000	0.407960	
mm_65783.1	chr7	28781257	28781457	-	1	NA	NA	NA	157	NR_040339	100503790	Mm.446894	NR_040339		Gm19897	-	predicted gene, 19897	ncRNA	0.020000	0.472637	89(GATTTTAAAAAG,-,0.00)
mm_120975.1	chr14	78650799	78650999	+	1	NA	NA	NA	-6448	NR_104044	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.015000	0.542289	
mm_163155.1	chr11	83605531	83605731	-	1	NA	NA	NA	-12544	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.000000	0.447761	
mm_101239.1	chr11	20699488	20699688	-	1	NA	NA	NA	41968	NM_001290545	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.005000	0.358209	
mm_17211.1	chr2	25478005	25478205	-	1	NA	NA	NA	-8356	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.005000	0.542289	
mm_138752.1	chr17	37046015	37046215	+	1	NA	NA	NA	149	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.110000	0.731343	
mm_164335.1	chr16	10976528	10976728	+	1	NA	NA	NA	16493	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.020000	0.522388	
mm_105293.1	chr11	102470055	102470255	-	1	NA	NA	NA	-272	NM_010575	16399	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0.005000	0.517413	
mm_31761.1	chr4	63385383	63385583	+	1	NA	NA	NA	12757	NM_001305432	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.010000	0.532338	
mm_79787.1	chr9	63602577	63602777	+	1	NA	NA	NA	22	NM_025857	66939	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.140000	0.746269	
mm_140631.1	chr17	12507080	12507280	-	1	NA	NA	NA	524	NM_011395	20519	Mm.99252	NM_011395	ENSMUSG00000023828	Slc22a3	EMT|Oct3|Orct3|Slca22a3	solute carrier family 22 (organic cation transporter), member 3	protein-coding	0.110000	0.696517	
mm_12483.1	chr2	71529802	71530002	+	1	NA	NA	NA	457	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.025000	0.482587	
mm_92299.1	chr10	73690910	73691110	-	1	NA	NA	NA	-130857	NM_001142760	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0.025000	0.502488	
mm_98173.1	chr11	87755478	87755678	+	1	NA	NA	NA	-1286	NR_029555	387160		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.035000	0.582090	
mm_56632.1	chr6	112947191	112947391	-	1	NA	NA	NA	-25	NM_080448	259302	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	0.035000	0.567164	
mm_53697.1	chr6	142756667	142756867	+	1	NA	NA	NA	81	NM_009908	12764	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.140000	0.771144	
mm_79809.1	chr9	64177625	64177825	+	1	NA	NA	NA	-1572	NM_183316	330959	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	0.015000	0.427861	
mm_47747.1	chr5	130255366	130255566	-	1	NA	NA	NA	64	NM_023248	66711	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	Shwachman-Bodian-Diamond syndrome homolog (human)	protein-coding	0.110000	0.631841	
mm_97567.1	chr11	78937465	78937665	+	1	NA	NA	NA	12274	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.030000	0.582090	
mm_48340.1	chr5	139130076	139130276	-	1	NA	NA	NA	210	NM_001253890	19085	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	0.025000	0.527363	
mm_166181.1	chr5	31494703	31494903	+	1	NA	NA	NA	42	NM_133756	74254	Mm.348649	NM_133756	ENSMUSG00000064037	Gpn1	2410004J02Rik|AI449615|MBDIN|NTPBP|Xab1	GPN-loop GTPase 1	protein-coding	0.085000	0.656716	
mm_114115.1	chr13	55003121	55003321	+	1	NA	NA	NA	17598	NM_001206390	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.040000	0.641791	
mm_93284.1	chr10	96181407	96181607	-	1	NA	NA	NA	-44700	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.010000	0.492537	
mm_135817.1	chr16	58082867	58083067	-	1	NA	NA	NA	-325568	NM_028523	73379	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.010000	0.412935	
mm_109913.1	chr12	8480148	8480348	-	1	NA	NA	NA	19737	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.015000	0.542289	
mm_30367.1	chr3	152165823	152166023	-	1	NA	NA	NA	-23	NM_016867	54120	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.095000	0.701493	
mm_56433.1	chr6	97354031	97354231	-	1	NA	NA	NA	-101351	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.015000	0.557214	
mm_17503.1	chr2	28915739	28915939	-	1	NA	NA	NA	582	NM_019446	54422	Mm.21390	NM_019446	ENSMUSG00000026805	Barhl1	Dres115|MBH2	BarH-like 1 (Drosophila)	protein-coding	0.065000	0.696517	
mm_92417.1	chr10	76884364	76884564	-	1	NA	NA	NA	77483	NM_001347216	59093	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding	0.000000	0.258706	
mm_157838.1	chrX	74304589	74304789	-	1	NA	NA	NA	-323	NM_010273	14567	Mm.205830	NM_010273	ENSMUSG00000015291	Gdi1	GDIA|GDIalpha	guanosine diphosphate (GDP) dissociation inhibitor 1	protein-coding	0.015000	0.452736	
mm_127199.1	chr15	99099406	99099606	+	1	NA	NA	NA	22	NM_176835	72778	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	0.015000	0.592040	
mm_135718.1	chr16	55818218	55818418	-	1	NA	NA	NA	3820	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.025000	0.527363	
mm_150859.1	chr19	45015111	45015311	+	1	NA	NA	NA	1	NM_001130525	226154	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.090000	0.711443	
mm_128954.1	chr15	74784770	74784970	-	1	NA	NA	NA	-6011	NR_027837	78725	Mm.171357	NM_172433	ENSMUSG00000101026	D730001G18Rik	Ly6g6g	RIKEN cDNA D730001G18 gene	ncRNA	0.000000	0.517413	
mm_590.1	chr1	39551202	39551402	+	1	NA	NA	NA	-2462	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.000000	0.298507	-64(CTTTTTATGCTG,+,0.00)
mm_111377.1	chr12	87266164	87266364	-	1	NA	NA	NA	22	NM_001142580	104799	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	0.045000	0.552239	
mm_52633.1	chr6	117174308	117174508	+	1	NA	NA	NA	5873	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.005000	0.447761	
mm_25804.1	chr3	127789204	127789404	+	1	NA	NA	NA	-609	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.025000	0.492537	41(CCCTAAATAGAA,+,0.00)
mm_138380.1	chr17	35024269	35024469	+	1	NA	NA	NA	3647	NR_028258	78376	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	0.040000	0.681592	
mm_159863.1	chr5	142776054	142776254	-	1	NA	NA	NA	41233	NM_178242	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.025000	0.547264	
mm_92580.1	chr10	79995293	79995493	-	1	NA	NA	NA	-2215	NM_001347081	27403	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.015000	0.402985	
mm_34562.1	chr4	149701630	149701830	+	1	NA	NA	NA	-101	NM_001029837	18707	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol 3-kinase catalytic delta polypeptide	protein-coding	0.010000	0.432836	-17(TTTTATAAAGGC,+,0.00)
mm_99958.1	chr11	113619283	113619483	+	1	NA	NA	NA	-98	NM_009217	20606		NM_009217	ENSMUSG00000047904	Sstr2	SRIF-1|SS2R|SSTR-2|Smstr-2|Smstr2|sst2	somatostatin receptor 2	protein-coding	0.095000	0.726368	
mm_130554.1	chr15	99088328	99088528	-	1	NA	NA	NA	-700	NM_001024702	239659	Mm.309917	NM_001024702	ENSMUSG00000001076	C1ql4	C1qtnf11|CTRP11	complement component 1, q subcomponent-like 4	protein-coding	0.090000	0.711443	
mm_27570.1	chr3	58637111	58637311	-	1	NA	NA	NA	-4	NM_001081262	545527	Mm.357722	NM_001081262	ENSMUSG00000070471	Erich6	4932431H17Rik|Fam194a	glutamate rich 6	protein-coding	0.055000	0.582090	
mm_29598.1	chr3	119783187	119783387	-	1	NA	NA	NA	101	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.155000	0.716418	
mm_124295.1	chr14	103054935	103055135	-	1	NA	NA	NA	8023	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.045000	0.567164	
mm_2973.1	chr1	133084059	133084259	+	1	NA	NA	NA	38147	NM_001099276	240752	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphoinositide-3-kinase, class 2, beta polypeptide	protein-coding	0.010000	0.611940	
mm_149571.1	chr19	12805212	12805412	+	1	NA	NA	NA	6703	NM_134152	107321	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	0.000000	0.333333	
mm_13630.1	chr2	113655372	113655572	+	1	NA	NA	NA	-29618	NM_001287818	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.005000	0.542289	-15(GGCTTTATGGGG,-,0.00)
mm_137954.1	chr17	32965741	32965941	+	1	NA	NA	NA	10	NM_153063	224691	Mm.328953	NM_153063	ENSMUSG00000053600	Zfp472	KRIM-1|Krim-1A|Krim-1B|Krim1	zinc finger protein 472	protein-coding	0.035000	0.567164	
mm_42231.1	chr5	113538982	113539182	+	1	NA	NA	NA	-11338	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.000000	0.567164	
mm_167971.1	chrX	154398129	154398329	+	1	NA	NA	NA	-54837	NM_001256259	75071	Mm.159415	NM_001256259	ENSMUSG00000059663	4930524N10Rik	-	RIKEN cDNA 4930524N10 gene	protein-coding	0.000000	0.398010	-87(GGCCCTTTAAGA,-,0.00),-84(CCTTTAAGACTG,+,0.00),-15(CTATTTAAAGTG,+,0.00)
mm_90137.1	chr10	117861050	117861250	+	1	NA	NA	NA	-15176	NM_024457	215449	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.050000	0.597015	
mm_31377.1	chr4	47413697	47413897	+	1	NA	NA	NA	27581	NM_001312869	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.005000	0.477612	
mm_113441.1	chr13	34924320	34924520	+	1	NA	NA	NA	11	NM_025750	66761	Mm.157047	NM_025750	ENSMUSG00000021415	4933417A18Rik	-	RIKEN cDNA 4933417A18 gene	protein-coding	0.010000	0.502488	
mm_146654.1	chr18	11051834	11052034	-	1	NA	NA	NA	-576	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.040000	0.592040	
mm_136085.1	chr16	84835531	84835731	-	1	NA	NA	NA	-6	NM_001302213	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.115000	0.721393	
mm_47917.1	chr5	135000838	135001038	-	1	NA	NA	NA	412	NR_026907	71304	Mm.482317	NR_026907	ENSMUSG00000054909	Wbscr25	4933433J03Rik|4933439O14Rik	Williams Beuren syndrome chromosome region 25 (human)	ncRNA	0.050000	0.601990	
mm_139854.1	chr17	69969016	69969216	+	1	NA	NA	NA	43	NM_001347411	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.125000	0.731343	
mm_17391.1	chr2	27110468	27110668	-	1	NA	NA	NA	31187	NM_029981	77794	Mm.330088	NM_029981	ENSMUSG00000036040	Adamtsl2	A930008K15Rik|tcp-1	ADAMTS-like 2	protein-coding	0.000000	0.472637	
mm_82547.1	chr9	20925749	20925949	-	1	NA	NA	NA	-11685	NR_106049	102466802		NR_106049	ENSMUSG00000099147	Mir7081	Gm27904|mmu-mir-7081	microRNA 7081	ncRNA	0.010000	0.427861	
mm_58626.1	chr7	5080156	5080356	+	1	NA	NA	NA	21	NM_001252454	13854	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0.135000	0.746269	
mm_158317.1	chrX	129614812	129615012	-	1	NA	NA	NA	-134830	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.020000	0.522388	
mm_58979.1	chr7	19054595	19054795	+	1	NA	NA	NA	8	NM_001159671	83434	Mm.84435	NM_031255	ENSMUSG00000040866	Rsph6a	RSP4|Rshl1	radial spoke head 6 homolog A (Chlamydomonas)	protein-coding	0.060000	0.616915	
mm_4536.1	chr1	176754426	176754626	+	1	NA	NA	NA	17897	NR_029775	723921		NR_029775	ENSMUSG00000065573	Mir350	Mirn350|mir-350|mmu-mir-350	microRNA 350	ncRNA	0.020000	0.472637	21(GCTTAAATACGA,+,0.00)
mm_100114.1	chr11	115832712	115832912	+	1	NA	NA	NA	8754	NM_001252532	217325	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	lethal giant larvae homolog 2 (Drosophila)	protein-coding	0.025000	0.597015	
mm_144422.1	chr18	21001156	21001356	+	1	NA	NA	NA	-44	NM_019706	56515	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	0.085000	0.636816	
mm_8851.1	chr1	162710322	162710522	-	1	NA	NA	NA	30134	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.010000	0.477612	
mm_128516.1	chr15	53346044	53346244	-	1	NA	NA	NA	39	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.130000	0.676617	
mm_96657.1	chr11	69395707	69395907	+	1	NA	NA	NA	16	NM_030083	78304	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	0.070000	0.577114	
mm_139964.1	chr17	71673115	71673315	+	1	NA	NA	NA	-46	NM_177087	320159	Mm.187372	NM_177087	ENSMUSG00000045761	Fam179a	4632412N22Rik	family with sequence similarity 179, member A	protein-coding	0.035000	0.601990	
mm_20285.1	chr2	126910277	126910477	-	1	NA	NA	NA	-7992	NR_106202	102466258		NR_106202	ENSMUSG00000098896	Mir3473g	Gm27751|mmu-mir-3473g	microRNA 3473g	ncRNA	0.010000	0.487562	
mm_152894.1	chr19	24862089	24862289	-	1	NA	NA	NA	-347	NM_175013	226041	Mm.105222	NM_175013	ENSMUSG00000041731	Pgm5	4833423B07|9530034F03Rik|D830025G17|aciculin	phosphoglucomutase 5	protein-coding	0.005000	0.597015	
mm_72487.1	chr8	83666755	83666955	+	1	NA	NA	NA	215	NM_013641	19216	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	42kDa|EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	0.035000	0.656716	
mm_60960.1	chr7	47699843	47700043	+	1	NA	NA	NA	-98571	NM_153067	233222	Mm.240142	NM_153067	ENSMUSG00000078698	Mrgpra3	Mrga3	MAS-related GPR, member A3	protein-coding	0.015000	0.412935	
mm_166997.1	chr7	46728485	46728685	+	1	NA	NA	NA	4018	NM_011316	20211	Mm.3489	NM_011316	ENSMUSG00000040017	Saa4	Saa-4|Saa-5	serum amyloid A 4	protein-coding	0.000000	0.517413	
mm_120418.1	chr14	65358537	65358737	+	1	NA	NA	NA	-39	NM_199029	380912	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.160000	0.810945	
mm_29888.1	chr3	131233983	131234183	-	1	NA	NA	NA	38018	NM_008212	15107	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.010000	0.527363	
mm_28353.1	chr3	89683085	89683285	-	1	NA	NA	NA	-31837	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.035000	0.517413	-33(TAGCTTAAAAGC,-,0.00),-31(GCTTAAAAGCAC,+,0.00)
mm_24305.1	chr3	89392144	89392344	+	1	NA	NA	NA	380	NR_040403	545539	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	ENSMUSG00000074466|OTTMUSG00000021274	predicted gene 15417	ncRNA	0.065000	0.646766	
mm_136640.1	chr17	5799533	5799733	+	1	NA	NA	NA	143	NR_045080	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.040000	0.552239	
mm_84782.1	chr9	76362023	76362223	-	1	NA	NA	NA	-38545	NM_198962	387285	Mm.335300	NM_198962	ENSMUSG00000032360	Hcrtr2	OX2R|mOX2aR|mOX2bR|mOXR2	hypocretin (orexin) receptor 2	protein-coding	0.000000	0.388060	
mm_167016.1	chr7	63889008	63889208	-	1	NA	NA	NA	-27749	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.015000	0.477612	
mm_130106.1	chr15	89429727	89429927	-	1	NA	NA	NA	100	NR_037154	12651	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	0.080000	0.606965	
mm_26494.1	chr3	145576061	145576261	+	1	NA	NA	NA	-47	NM_001081094	229937	Mm.24586	NM_001081094	ENSMUSG00000074182	Znhit6	2410019A14Rik	zinc finger, HIT type 6	protein-coding	0.085000	0.636816	
mm_151066.1	chr19	47455536	47455736	+	1	NA	NA	NA	8775	NM_001164717	14218	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.020000	0.517413	-88(CCCTCTATGAGG,-,0.00)
mm_10998.1	chr2	26389249	26389449	+	1	NA	NA	NA	1	NM_173180	66865	Mm.250359	NM_173180	ENSMUSG00000026926	Pmpca	1200002L24Rik|4933435E07Rik|Alpha-MPP|P-55	peptidase (mitochondrial processing) alpha	protein-coding	0.160000	0.771144	
mm_157196.1	chrX	12128262	12128462	-	1	NA	NA	NA	31984	NR_045434	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.085000	0.636816	
mm_32859.1	chr4	118375399	118375599	+	1	NA	NA	NA	15500	NR_003946	68180	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	0.030000	0.577114	
mm_137621.1	chr17	28299564	28299764	+	1	NA	NA	NA	-13866	NR_028297	72775	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	0.020000	0.587065	
mm_73632.1	chr8	110721400	110721600	+	1	NA	NA	NA	24	NM_198625	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.190000	0.825871	
mm_58172.1	chr6	142702209	142702409	-	1	NA	NA	NA	-35	NM_001310143	20928	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0.080000	0.661692	
mm_88087.1	chr10	68276472	68276672	+	1	NA	NA	NA	2154	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.055000	0.592040	
mm_160259.1	chr7	108612177	108612377	+	1	NA	NA	NA	-32	NM_001011871	258215	Mm.377380	NM_001011871	ENSMUSG00000058244	Olfr506	MOR204-23	olfactory receptor 506	protein-coding	0.005000	0.398010	-97(CTCTTTAAATGA,-,0.00)
mm_88685.1	chr10	80075494	80075694	+	1	NA	NA	NA	21575	NM_001037741	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.025000	0.601990	
mm_167984.1	chrX	167330499	167330699	-	1	NA	NA	NA	-28	NM_001290756	170743	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	0.025000	0.447761	
mm_163534.1	chr13	10888947	10889147	-	1	NA	NA	NA	-528244	NM_033269	12671	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.010000	0.407960	
mm_56565.1	chr6	101377310	101377510	-	1	NA	NA	NA	487	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.160000	0.781095	
mm_44007.1	chr5	146948698	146948898	+	1	NA	NA	NA	141	NM_025652	66596	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0.165000	0.756219	
mm_20324.1	chr2	127444448	127444648	-	1	NA	NA	NA	17	NM_029629	68126	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	0.080000	0.626866	
mm_120665.1	chr14	70545349	70545549	+	1	NA	NA	NA	198	NM_180588	72549	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	0.115000	0.711443	
mm_163886.1	chr14	25011498	25011698	+	1	NA	NA	NA	131643	NR_045718	75862	Mm.109191	NR_045718		4930572O13Rik	-	RIKEN cDNA 4930572O13 gene	ncRNA	0.005000	0.482587	
mm_128004.1	chr15	12824530	12824730	-	1	NA	NA	NA	27	NM_029998	77877	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	0.135000	0.671642	
mm_54195.1	chr6	24603337	24603537	-	1	NA	NA	NA	5666	NM_053098	93677	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	0.010000	0.417910	
mm_161945.1	chr19	4197604	4197804	-	1	NA	NA	NA	3899	NM_011237	19367	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0.025000	0.587065	
mm_91350.1	chr10	27616710	27616910	-	1	NA	NA	NA	132	NM_008481	16773	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding	0.060000	0.661692	
mm_97861.1	chr11	83116775	83116975	+	1	NA	NA	NA	30	NM_011407	20555	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0.020000	0.527363	
mm_169525.1	chr14	90294772	90294972	+	1	NA	NA	NA	167981	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA	0.040000	0.502488	-33(CTCTTTAAAGAG,+,0.00),-33(CTCTTTAAAGAG,-,0.00),-31(CTTTAAAGAGGG,+,0.00)
mm_68295.1	chr7	105737202	105737402	-	1	NA	NA	NA	83	NM_133951	101867	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.050000	0.557214	
mm_42024.1	chr5	108278938	108279138	+	1	NA	NA	NA	10141	NM_026106	13486	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0.005000	0.303483	73(TCTTTTAAGGTG,+,0.00),84(GAGTATATATGC,-,0.00)
mm_110251.1	chr12	31617073	31617273	-	1	NA	NA	NA	17424	NM_007530	12033	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	0.010000	0.313433	
mm_148833.1	chr19	6342468	6342668	+	1	NA	NA	NA	1408	NR_117093	26412	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0.005000	0.552239	
mm_96070.1	chr11	59810193	59810393	+	1	NA	NA	NA	213	NR_045686	100504104	Mm.391737	NR_045686	ENSMUSG00000087249	Gm16062	ENSMUSG00000072890|OTTMUSG00000029633	predicted gene 16062	ncRNA	0.040000	0.557214	
mm_103838.1	chr11	83040106	83040306	-	1	NA	NA	NA	-164	NR_073523	237887	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	pseudo	0.040000	0.462687	-5(TAGTTTATAAGC,-,0.00)
mm_74629.1	chr8	13171173	13171373	-	1	NA	NA	NA	12112	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.005000	0.532338	
mm_150321.1	chr19	34573952	34574152	+	1	NA	NA	NA	-9477	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.015000	0.412935	
mm_128462.1	chr15	50806602	50806802	-	1	NA	NA	NA	82347	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.358209	
mm_34755.1	chr4	152338564	152338764	+	1	NA	NA	NA	13	NM_001081376	269610	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding	0.150000	0.761194	
mm_150513.1	chr19	39030218	39030418	+	1	NA	NA	NA	23299	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.005000	0.323383	
mm_78562.1	chr9	35740871	35741071	+	1	NA	NA	NA	-78	NM_001167588	100312949	Mm.475848	NM_001167588	ENSMUSG00000091174	Gm17677	Pate-n|Pate10	predicted gene, 17677	protein-coding	0.000000	0.452736	
mm_14926.1	chr2	151494093	151494293	+	1	NA	NA	NA	11	NM_198326	386649	Mm.419479	NM_198326	ENSMUSG00000027455	Nsfl1c	Munc-18c|Stxbp3a|p47	NSFL1 (p97) cofactor (p47)	protein-coding	0.095000	0.671642	
mm_108663.1	chr12	86470016	86470216	+	1	NA	NA	NA	48472	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.070000	0.611940	
mm_13.1	chr1	4857626	4857826	+	1	NA	NA	NA	32	NM_011541	21399	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.095000	0.641791	
mm_85992.1	chr9	112199923	112200123	-	1	NA	NA	NA	-12094	NM_028755	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.030000	0.512438	41(GGGTTTAAGAGC,-,0.00)
mm_45739.1	chr5	86518455	86518655	-	1	NA	NA	NA	45	NM_177162	320454	Mm.184522	NM_177162	ENSMUSG00000079451	Tmprss11g	9930032O22Rik|Desc4	transmembrane protease, serine 11g	protein-coding	0.030000	0.432836	
mm_170783.1	chr2	173984597	173984797	-	1	NA	NA	NA	-92354	NM_172675	228960	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.030000	0.472637	
mm_63150.1	chr7	123369692	123369892	+	1	NA	NA	NA	123	NM_001122643	70497	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.150000	0.746269	
mm_3200.1	chr1	135818632	135818832	+	1	NA	NA	NA	134	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding	0.125000	0.746269	
mm_94898.1	chr11	29172839	29173039	+	1	NA	NA	NA	32	NM_134034	104570	Mm.276386	NM_134034	ENSMUSG00000020463	Smek2	AW011752|AW557776|Ppp4r3b|mKIAA1387	SMEK homolog 2, suppressor of mek1 (Dictyostelium)	protein-coding	0.105000	0.626866	
mm_135216.1	chr16	36656653	36656853	-	1	NA	NA	NA	9324	NM_019388	12524	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.000000	0.407960	
mm_33801.1	chr4	134926616	134926816	+	1	NA	NA	NA	3091	NM_023665	27981	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.005000	0.323383	
mm_44445.1	chr5	21664869	21665069	-	1	NA	NA	NA	18985	NM_026034	67211	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	0.000000	0.288557	-75(GACTTTAAAAAA,-,0.00)
mm_68513.1	chr7	111593884	111594084	-	1	NA	NA	NA	185993	NM_173739	233733	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	0.025000	0.497512	28(CTGTTTAAAGGG,-,0.00)
mm_119324.1	chr14	37135387	37135587	+	1	NA	NA	NA	-165	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.070000	0.562189	
mm_74506.1	chr8	8617456	8617656	-	1	NA	NA	NA	43217	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.015000	0.298507	-32(ATTTTAATAGCC,+,0.00)
mm_162266.1	chr1	6324545	6324745	+	1	NA	NA	NA	-34686	NM_001195732	620393	Mm.388992	NM_001195732	ENSMUSG00000087247	Fam150a	EG620393	family with sequence similarity 150, member A	protein-coding	0.010000	0.412935	
mm_46715.1	chr5	110448377	110448577	-	1	NA	NA	NA	26	NM_001317042	381668	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.105000	0.711443	
mm_149220.1	chr19	10014947	10015147	+	1	NA	NA	NA	-3147	NM_001347430	74760	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	0.030000	0.592040	
mm_47799.1	chr5	132509101	132509301	-	1	NA	NA	NA	33142	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.005000	0.378109	
mm_36325.1	chr4	70410214	70410414	-	1	NA	NA	NA	121	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.110000	0.691542	
mm_53544.1	chr6	136827680	136827880	+	1	NA	NA	NA	436	NM_021714	60321	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	0.145000	0.721393	
mm_13565.1	chr2	112266380	112266580	+	1	NA	NA	NA	166	NM_133649	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.035000	0.557214	
mm_122561.1	chr14	49525772	49525972	-	1	NA	NA	NA	-35	NM_029238	75288	Mm.78738	NM_029238	ENSMUSG00000021852	Slc35f4	4930550L21Rik	solute carrier family 35, member F4	protein-coding	0.090000	0.706468	
mm_45832.1	chr5	87694589	87694789	-	1	NA	NA	NA	4736	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.512438	
mm_15099.1	chr2	153346017	153346217	+	1	NA	NA	NA	-22	NM_001039939	228790	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0.170000	0.791045	
mm_99472.1	chr11	102436275	102436475	+	1	NA	NA	NA	6053	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.030000	0.537313	
mm_70670.1	chr8	14897113	14897313	+	1	NA	NA	NA	8677	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.025000	0.497512	
mm_104524.1	chr11	96075285	96075485	-	1	NA	NA	NA	246	NM_001161419	11951	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	0.045000	0.522388	-80(GAGTCTTTAAGC,-,0.00)
mm_77635.1	chr8	124152710	124152910	-	1	NA	NA	NA	-78584	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0.020000	0.532338	
mm_163429.1	chr12	83359153	83359353	-	1	NA	NA	NA	128483	NM_001267626	70127	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0.005000	0.358209	
mm_119904.1	chr14	54949804	54950004	+	1	NA	NA	NA	-762	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.010000	0.567164	
mm_146313.1	chr18	80468093	80468293	+	1	NA	NA	NA	1474	NM_026295	67655	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.010000	0.502488	
mm_72483.1	chr8	83652591	83652791	+	1	NA	NA	NA	13	NM_018771	67903	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	0.145000	0.771144	
mm_6460.1	chr1	74026866	74027066	-	1	NA	NA	NA	97481	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.025000	0.552239	-73(TTCCATAAAAGG,-,0.00),-71(CCATAAAAGGGG,+,0.00)
mm_97762.1	chr11	81587259	81587459	+	1	NA	NA	NA	-13820	NM_001033765	237880	Mm.435528	NM_001033765		1700071K01Rik	-	RIKEN cDNA 1700071K01 gene	protein-coding	0.040000	0.587065	
mm_59568.1	chr7	28101159	28101359	+	1	NA	NA	NA	-28207	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.020000	0.562189	
mm_144733.1	chr18	35562089	35562289	+	1	NA	NA	NA	31	NM_010771	17184	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0.100000	0.676617	
mm_40287.1	chr5	43233616	43233816	+	1	NA	NA	NA	253	NM_001177379	231207	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.110000	0.751244	
mm_64102.1	chr7	141020775	141020975	+	1	NA	NA	NA	-3983	NM_001033632	213002	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.015000	0.517413	
mm_221.1	chr1	17098010	17098210	+	1	NA	NA	NA	-221	NM_020604	57339	Mm.143761	NM_020604	ENSMUSG00000042686	Jph1	ENSMUSG00000054314|JP-1|Jp1	junctophilin 1	protein-coding	0.055000	0.597015	
mm_51442.1	chr6	80149505	80149705	+	1	NA	NA	NA	129962	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.010000	0.393035	
mm_77071.1	chr8	110039257	110039457	-	1	NA	NA	NA	-23	NM_011998	26887	Mm.89207	NM_011998	ENSMUSG00000035930	Chst4	GST-3|Gn6st-2|HEC-GlcNAc6ST	carbohydrate (chondroitin 6/keratan) sulfotransferase 4	protein-coding	0.015000	0.517413	
mm_103021.1	chr11	69734921	69735121	-	1	NA	NA	NA	23612	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.005000	0.527363	
mm_68994.1	chr7	126649430	126649630	-	1	NA	NA	NA	221	NM_029339	75565	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	0.130000	0.721393	
mm_153953.1	chr19	47691794	47691994	-	1	NA	NA	NA	148	NM_007732	12821	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	0.025000	0.492537	
mm_85798.1	chr9	110100931	110101131	-	1	NA	NA	NA	56	NM_001252683	72831	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	0.115000	0.706468	
mm_40680.1	chr5	65539428	65539628	+	1	NA	NA	NA	2283	NM_001310619	53323	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.005000	0.402985	15(ACCCATAAATGC,-,0.00)
mm_161227.1	chr13	76384774	76384974	+	1	NA	NA	NA	-87	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.070000	0.666667	
mm_101659.1	chr11	36677728	36677928	-	1	NA	NA	NA	266413	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.045000	0.502488	
mm_99070.1	chr11	99168306	99168506	+	1	NA	NA	NA	-13329	NM_007719	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.020000	0.492537	
mm_134547.1	chr16	19884142	19884342	-	1	NA	NA	NA	32	NR_027896	68162	Mm.35159	NR_015488		A930003A15Rik	AI853191	RIKEN cDNA A930003A15 gene	ncRNA	0.015000	0.482587	
mm_167427.1	chr8	115705795	115705995	-	1	NA	NA	NA	999	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.065000	0.592040	
mm_141206.1	chr17	27043037	27043237	-	1	NA	NA	NA	13878	NM_027544	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.015000	0.601990	
mm_101091.1	chr11	11873140	11873340	-	1	NA	NA	NA	5117	NR_045178	73321	Mm.443306	NR_045178	ENSMUSG00000086391	1700042O10Rik	-	RIKEN cDNA 1700042O10 gene	ncRNA	0.015000	0.601990	
mm_81575.1	chr9	110422194	110422394	+	1	NA	NA	NA	2486	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.020000	0.462687	
mm_83355.1	chr9	44379206	44379406	-	1	NA	NA	NA	-184	NM_021395	12282	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	0.115000	0.656716	
mm_43914.1	chr5	144406438	144406638	+	1	NA	NA	NA	48013	NR_102373	100579137		NR_102372	ENSMUSG00000104600	Dmrt1i	Dmr	Dmrt1 interacting ncRNA	ncRNA	0.035000	0.572139	
mm_68426.1	chr7	109781446	109781646	-	1	NA	NA	NA	-1	NM_020610	78593	Mm.275374	NM_020610	ENSMUSG00000034825	Nrip3	A330103B05Rik|D7H11orf14|ICRFP703B1614Q5.2	nuclear receptor interacting protein 3	protein-coding	0.120000	0.686567	-33(GGATATAAAAGG,-,0.00)
mm_13576.1	chr2	112361648	112361848	+	1	NA	NA	NA	6279	NM_026519	68032	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	0.000000	0.383085	
mm_118667.1	chr14	21848428	21848628	+	1	NA	NA	NA	382	NM_026965	69156	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0.050000	0.636816	
mm_161902.1	chr18	59175097	59175297	+	1	NA	NA	NA	-143	NM_001081328	78923	Mm.84007	NM_001081328	ENSMUSG00000058152	Chsy3	4833446K15Rik|AI662215	chondroitin sulfate synthase 3	protein-coding	0.120000	0.726368	
mm_126819.1	chr15	88751725	88751925	+	1	NA	NA	NA	114	NM_181412	223773	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0.180000	0.771144	
mm_17366.1	chr2	26902707	26902907	-	1	NA	NA	NA	80	NM_009298	20935	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	0.070000	0.616915	
mm_107865.1	chr12	69907701	69907901	+	1	NA	NA	NA	-14638	NM_201519	399510	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	0.035000	0.587065	
mm_88902.1	chr10	81177615	81177815	+	1	NA	NA	NA	1084	NM_007907	13629	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0.035000	0.577114	
mm_79887.1	chr9	65294208	65294408	+	1	NA	NA	NA	48	NM_011802	270166	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0.090000	0.696517	
mm_158439.1	chrX	140062623	140062823	-	1	NA	NA	NA	-155	NM_001081668	279706	Mm.102590	NM_001081668	ENSMUSG00000072944	Nup62cl	Gm719	nucleoporin 62 C-terminal like	protein-coding	0.055000	0.587065	-78(CTCCTTTAAAAC,-,0.00),-76(CCTTTAAAACAA,+,0.00)
mm_89835.1	chr10	106632682	106632882	+	1	NA	NA	NA	-30302	NR_131026	75833	Mm.159596	NR_131026		4930532I03Rik	-	RIKEN cDNA 4930532I03 gene	ncRNA	0.045000	0.457711	
mm_58825.1	chr7	16733572	16733772	+	1	NA	NA	NA	-4772	NM_198613	232910	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	0.020000	0.487562	
mm_14064.1	chr2	122704139	122704339	+	1	NA	NA	NA	-1576	NM_001290993	22785	Mm.27801	NM_011774	ENSMUSG00000005802	Slc30a4	Znt4|lm|znT-4	solute carrier family 30 (zinc transporter), member 4	protein-coding	0.005000	0.477612	-54(GGTCATAAAAGG,-,0.00)
mm_58799.1	chr7	16248338	16248538	+	1	NA	NA	NA	-4284	NM_176912	319430	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	0.030000	0.547264	
mm_26334.1	chr3	142546415	142546615	+	1	NA	NA	NA	-13537	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.000000	0.393035	
mm_110253.1	chr12	31634408	31634608	-	1	NA	NA	NA	89	NM_007530	12033	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	0.150000	0.751244	
mm_9349.1	chr1	172067746	172067946	-	1	NA	NA	NA	-10250	NM_010916	18071	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	0.045000	0.567164	
mm_161975.1	chr19	12883568	12883768	+	1	NA	NA	NA	-215	NM_146699	258694	Mm.391190	NM_146699	ENSMUSG00000045126	Olfr1445	MOR202-7	olfactory receptor 1445	protein-coding	0.010000	0.358209	
mm_40768.1	chr5	67054366	67054566	+	1	NA	NA	NA	44660	NM_008888	18935	Mm.62505	NM_008888	ENSMUSG00000012520	Phox2b	Dilp1|NBPhox|Pmx2b|Px2b	paired-like homeobox 2b	protein-coding	0.005000	0.477612	
mm_59461.1	chr7	27232934	27233134	+	1	NA	NA	NA	21	NM_133770	76889	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0.070000	0.616915	
mm_158009.1	chrX	95477982	95478182	-	1	NA	NA	NA	47	NM_080858	70392	Mm.79122	NM_080858	ENSMUSG00000031204	Asb12	2310036C05Rik|Asb-12	ankyrin repeat and SOCS box-containing 12	protein-coding	0.010000	0.517413	
mm_136646.1	chr17	5841242	5841442	+	1	NA	NA	NA	-38	NM_025664	66616	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0.175000	0.815920	
mm_57618.1	chr6	128200484	128200684	-	1	NA	NA	NA	-16781	NR_077223	330427	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	0.075000	0.691542	
mm_4734.1	chr1	181576525	181576725	+	1	NA	NA	NA	-65174	NM_207280	403180	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	0.035000	0.601990	
mm_126932.1	chr15	91706499	91706699	+	1	NA	NA	NA	33375	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.000000	0.412935	-82(GTTTTAATAGAC,+,0.00),29(GCTCATAAGGGC,+,0.00)
mm_47106.1	chr5	118466377	118466577	-	1	NA	NA	NA	-94242	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.015000	0.487562	70(GACTTTTAAGGG,-,0.00),71(ACTTTTAAGGGA,+,0.00)
mm_164373.1	chr16	24629512	24629712	+	1	NA	NA	NA	-92243	NM_001145954	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.015000	0.437811	
mm_167729.1	chr9	103220844	103221044	+	1	NA	NA	NA	9342	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.030000	0.552239	
mm_93757.1	chr10	120175671	120175871	-	1	NA	NA	NA	25766	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.005000	0.472637	
mm_153029.1	chr19	31664572	31664772	-	1	NA	NA	NA	-302	NM_011160	19091	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0.090000	0.711443	
mm_47190.1	chr5	120754252	120754452	-	1	NA	NA	NA	-4504	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.010000	0.497512	
mm_22760.1	chr3	19989084	19989284	+	1	NA	NA	NA	32130	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.005000	0.427861	
mm_147011.1	chr18	34508081	34508281	-	1	NA	NA	NA	-1358	NM_146084	225358	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	0.010000	0.393035	
mm_125269.1	chr15	35653739	35653939	+	1	NA	NA	NA	7079	NR_035527	100316736		NR_035527	ENSMUSG00000076333	Mir599	mmu-mir-599	microRNA 599	ncRNA	0.015000	0.393035	
mm_90765.1	chr10	5711906	5712106	-	1	NA	NA	NA	72788	NM_001313969	22353	Mm.98916	NM_011702	ENSMUSG00000019772	Vip	-	vasoactive intestinal polypeptide	protein-coding	0.010000	0.353234	-19(AGTCTTAAAAGG,-,0.00)
mm_79283.1	chr9	50885393	50885593	+	1	NA	NA	NA	28569	NM_001286553	73699	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0.020000	0.477612	
mm_145258.1	chr18	52559096	52559296	+	1	NA	NA	NA	-29329	NM_001286182	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.020000	0.452736	
mm_131703.1	chr16	20717770	20717970	+	1	NA	NA	NA	44	NM_145632	245841	Mm.288730	NM_145632	ENSMUSG00000021018	Polr2h	-	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding	0.105000	0.621891	
mm_109761.1	chr12	117864823	117865023	+	1	NA	NA	NA	21062	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.015000	0.502488	
mm_138913.1	chr17	43602737	43602937	+	1	NA	NA	NA	-11328	NR_045444	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.015000	0.388060	
mm_127119.1	chr15	98092486	98092686	+	1	NA	NA	NA	-3	NM_001163488	18642	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	0.025000	0.412935	
mm_105496.1	chr11	106159808	106160008	-	1	NA	NA	NA	234	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.130000	0.751244	
mm_64906.1	chr7	16047830	16048030	-	1	NA	NA	NA	-23915	NM_001347559	666528	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.095000	0.656716	
mm_129444.1	chr15	78544551	78544751	-	1	NA	NA	NA	-306	NM_009218	20607	Mm.211411	NM_009218	ENSMUSG00000044933	Sstr3	Smstr-3|Smstr3|sst3	somatostatin receptor 3	protein-coding	0.010000	0.567164	
mm_161097.1	chr12	98757003	98757203	+	1	NA	NA	NA	10135	NM_029334	75553	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.030000	0.492537	
mm_172234.1	chr6	67941608	67941808	-	1	NA	NA	NA	-376009	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.015000	0.497512	
mm_78987.1	chr9	45399563	45399763	+	1	NA	NA	NA	-46	NR_028499	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.010000	0.572139	13(TGCCTTATAAGA,-,0.00),15(CCTTATAAGACC,+,0.00)
mm_48848.1	chr5	149618905	149619105	-	1	NA	NA	NA	17310	NM_013559	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.010000	0.462687	
mm_164692.1	chr17	47938152	47938352	-	1	NA	NA	NA	-13620	NM_001110825	74123	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.010000	0.492537	
mm_134835.1	chr16	26358030	26358230	-	1	NA	NA	NA	13709	NM_016674	12737	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding	0.000000	0.437811	
mm_4142.1	chr1	170884991	170885191	+	1	NA	NA	NA	449	NM_023173	80915	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ENSMUSG00000045460|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	0.095000	0.681592	
mm_2685.1	chr1	127306586	127306786	+	1	NA	NA	NA	101700	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.025000	0.552239	
mm_57408.1	chr6	124865622	124865822	-	1	NA	NA	NA	-1805	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.005000	0.462687	
mm_169752.1	chr15	90764576	90764776	-	1	NA	NA	NA	-85288	NM_001033851	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0.065000	0.542289	
mm_52827.1	chr6	121359170	121359370	+	1	NA	NA	NA	12573	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.005000	0.532338	
mm_53116.1	chr6	125096693	125096893	+	1	NA	NA	NA	-231	NR_106012	102466272		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	0.045000	0.711443	
mm_133031.1	chr16	57352677	57352877	+	1	NA	NA	NA	-500	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.015000	0.527363	
mm_111054.1	chr12	80109935	80110135	-	1	NA	NA	NA	2978	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.095000	0.686567	
mm_162567.1	chr1	172856356	172856556	-	1	NA	NA	NA	38598	NM_011318	20219	Mm.330510	NM_011318	ENSMUSG00000026542	Apcs	Sap	serum amyloid P-component	protein-coding	0.005000	0.457711	
mm_42300.1	chr5	114623561	114623761	+	1	NA	NA	NA	34760	NM_022017	63873	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.025000	0.567164	
mm_24063.1	chr3	87915466	87915666	+	1	NA	NA	NA	-3978	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.000000	0.467662	
mm_28959.1	chr3	100684508	100684708	-	1	NA	NA	NA	865	NM_010763	17156	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0.040000	0.462687	
mm_132984.1	chr16	52175985	52176185	+	1	NA	NA	NA	144536	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.010000	0.323383	
mm_94497.1	chr11	7119644	7119844	+	1	NA	NA	NA	56255	NM_009622	432530	Mm.259733	NM_009622	ENSMUSG00000020431	Adcy1	AC1|D11Bwg1392e|I-AC|brl|mKIAA4070	adenylate cyclase 1	protein-coding	0.010000	0.353234	
mm_46494.1	chr5	105132306	105132506	-	1	NA	NA	NA	7146	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.388060	
mm_165902.1	chr4	48279769	48279969	+	1	NA	NA	NA	109	NM_001281977	16348	Mm.317706	NM_010569	ENSMUSG00000028344	Invs	Nphp2|inv	inversin	protein-coding	0.060000	0.676617	
mm_102196.1	chr11	54437840	54438040	-	1	NA	NA	NA	-239	NM_173753	216742	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.085000	0.646766	
mm_147885.1	chr18	64692060	64692260	-	1	NA	NA	NA	-31160	NM_001001488	54670	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0.005000	0.318408	-81(GTGTCTAAGAGG,-,0.00)
mm_69344.1	chr7	130192220	130192420	-	1	NA	NA	NA	74488	NM_010207	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	0.020000	0.442786	
mm_161787.1	chr17	45659181	45659381	-	1	NA	NA	NA	28	NM_001013767	268958	Mm.426026	NM_001013767	ENSMUSG00000058626	Capn11	-	calpain 11	protein-coding	0.015000	0.597015	
mm_126067.1	chr15	77356378	77356578	+	1	NA	NA	NA	42632	NM_029419	75761	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	0.010000	0.567164	
mm_59088.1	chr7	19696280	19696480	+	1	NA	NA	NA	2018	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.005000	0.537313	
mm_38776.1	chr4	148038693	148038893	-	1	NA	NA	NA	20	NM_011929	26372	Mm.89987	NM_011929	ENSMUSG00000029016	Clcn6	AI850629|Clc6	chloride channel, voltage-sensitive 6	protein-coding	0.075000	0.701493	
mm_58525.1	chr7	4147713	4147913	+	1	NA	NA	NA	2059	NM_175529	243813	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.020000	0.487562	
mm_120822.1	chr14	75136474	75136674	+	1	NA	NA	NA	149	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.020000	0.472637	
mm_113608.1	chr13	41249867	41250067	+	1	NA	NA	NA	123	NM_001135577	108934	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.125000	0.731343	
mm_69879.1	chr7	141636642	141636842	-	1	NA	NA	NA	16041	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.000000	0.522388	
mm_56659.1	chr6	113483062	113483262	-	1	NA	NA	NA	-407	NM_133930	171508	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811	cysteine-rich with EGF-like domains 1	protein-coding	0.050000	0.572139	-50(GGGCTTTAAAGG,-,0.00),-49(GGCTTTAAAGGG,-,0.00),-48(GCTTTAAAGGGC,+,0.00)
mm_12488.1	chr2	71719289	71719489	+	1	NA	NA	NA	-28	NR_037979	381371	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	0.015000	0.547264	-33(GTCTTTAAAAAG,-,0.00),-31(CTTTAAAAAGCT,+,0.00)
mm_45269.1	chr5	64603063	64603263	-	1	NA	NA	NA	7536	NR_045078	100042198	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0.030000	0.467662	
mm_61485.1	chr7	75698298	75698498	+	1	NA	NA	NA	-149940	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.000000	0.278607	52(GTGTTTTTAAAG,-,0.00),53(TGTTTTTAAAGG,-,0.00),54(GTTTTTAAAGGG,+,0.00),54(GTTTTTAAAGGG,-,0.00)
mm_27037.1	chr3	26331713	26331913	-	1	NA	NA	NA	96	NM_138666	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.085000	0.676617	
mm_110394.1	chr12	41878515	41878715	-	1	NA	NA	NA	-392558	NM_010733	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.005000	0.482587	
mm_75797.1	chr8	70110139	70110339	-	1	NA	NA	NA	-7653	NR_106033	102465646		NR_106033	ENSMUSG00000099042	Mir7066	Gm27290|mmu-mir-7066	microRNA 7066	ncRNA	0.030000	0.597015	
mm_161401.1	chr14	120297574	120297774	+	1	NA	NA	NA	22005	NM_175341	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding	0.030000	0.373134	-32(AAGTTTAAAAGC,-,0.00)
mm_30857.1	chr4	28847211	28847411	+	1	NA	NA	NA	34166	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.005000	0.293532	
mm_3631.1	chr1	152807752	152807952	+	1	NA	NA	NA	7699	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.040000	0.562189	
mm_25848.1	chr3	129532319	129532519	+	1	NA	NA	NA	33	NM_130450	170439	Mm.314113	NM_130450	ENSMUSG00000041220	Elovl6	C77826|FAE|LCE	ELOVL family member 6, elongation of long chain fatty acids (yeast)	protein-coding	0.065000	0.572139	
mm_33988.1	chr4	137724361	137724561	+	1	NA	NA	NA	0	NR_138592	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.035000	0.621891	
mm_132244.1	chr16	32750964	32751164	+	1	NA	NA	NA	15178	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.005000	0.442786	
mm_11068.1	chr2	27676348	27676548	+	1	NA	NA	NA	-753	NM_011305	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.055000	0.557214	
mm_171645.1	chr4	32964749	32964949	+	1	NA	NA	NA	-14023	NM_001012451	140577	Mm.214766	NM_080471	ENSMUSG00000040183	Ankrd6	-	ankyrin repeat domain 6	protein-coding	0.075000	0.572139	
mm_89697.1	chr10	97607105	97607305	+	1	NA	NA	NA	0	NM_008438	16545	Mm.6228	NM_008438	ENSMUSG00000019932	Kera	CNA2|SLRR2B	keratocan	protein-coding	0.000000	0.388060	
mm_12329.1	chr2	69403890	69404090	+	1	NA	NA	NA	23528	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.025000	0.452736	
mm_98668.1	chr11	96282585	96282785	+	1	NA	NA	NA	780	NM_010461	15416	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	0.050000	0.507463	
mm_94085.1	chr10	128494044	128494244	-	1	NA	NA	NA	-258	NM_010860	17904	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.040000	0.517413	
mm_85200.1	chr9	96732213	96732413	-	1	NA	NA	NA	-638	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.015000	0.472637	55(CCGCATTTAAGG,-,0.00),57(GCATTTAAGGTG,+,0.00)
mm_84900.1	chr9	79830928	79831128	-	1	NA	NA	NA	37387	NR_040734	74633	Mm.262175	NR_040734	ENSMUSG00000086918	4930429F24Rik	-	RIKEN cDNA 4930429F24 gene	ncRNA	0.010000	0.537313	
mm_114571.1	chr13	75089547	75089747	+	1	NA	NA	NA	-340	NM_013628	18548	Mm.1333	NM_013628	ENSMUSG00000021587	Pcsk1	Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	0.020000	0.457711	
mm_59029.1	chr7	19304006	19304206	+	1	NA	NA	NA	5939	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.020000	0.572139	
mm_16993.1	chr2	18306914	18307114	-	1	NA	NA	NA	85816	NM_001190817	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.005000	0.333333	-49(GCTTATAAAACC,+,0.00)
mm_49540.1	chr6	30176383	30176583	+	1	NA	NA	NA	-140	NR_038124	100463519	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	0.050000	0.616915	
mm_133483.1	chr16	90220436	90220636	+	1	NA	NA	NA	-206	NM_011434	20655	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.110000	0.646766	
mm_42038.1	chr5	108404769	108404969	+	1	NA	NA	NA	16496	NM_008806	18587	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0.005000	0.482587	
mm_27668.1	chr3	65381183	65381383	-	1	NA	NA	NA	11270	NM_026155	67437	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.015000	0.512438	
mm_11420.1	chr2	31688443	31688643	+	1	NA	NA	NA	6	NM_001283046	11350	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.120000	0.701493	
mm_54842.1	chr6	42586477	42586677	-	1	NA	NA	NA	10795	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.010000	0.373134	
mm_10357.1	chr2	11690548	11690748	+	1	NA	NA	NA	-14645	NM_001271498	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.025000	0.522388	
mm_99923.1	chr11	110535822	110536022	+	1	NA	NA	NA	136800	NM_011943	26399	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.035000	0.542289	
mm_154595.1	chrX	7592979	7593179	+	1	NA	NA	NA	12341	NM_138603	54638	Mm.288192	NM_138603	ENSMUSG00000031143	Ccdc22	AI481216|DXImx40e|Ppp1r3f|Sfc22	coiled-coil domain containing 22	protein-coding	0.030000	0.567164	
mm_12260.1	chr2	68940534	68940734	+	1	NA	NA	NA	79193	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.010000	0.308458	
mm_149522.1	chr19	12442720	12442920	+	1	NA	NA	NA	14915	NM_019540	56093	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.015000	0.522388	
mm_137051.1	chr17	17917783	17917983	+	1	NA	NA	NA	30059	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.000000	0.363184	
mm_94247.1	chr11	3330645	3330845	+	1	NA	NA	NA	14	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.020000	0.557214	
mm_88331.1	chr10	75571447	75571647	+	1	NA	NA	NA	-1948	NM_008116	14598	Mm.4559	NM_008116	ENSMUSG00000006345	Ggt1	CD224|GGT|GGT 1|GGT-1|Ggtp|dwg	gamma-glutamyltransferase 1	protein-coding	0.025000	0.577114	
mm_77402.1	chr8	120537170	120537370	-	1	NA	NA	NA	-139	NM_001145896	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.140000	0.766169	
mm_53818.1	chr6	147091406	147091606	+	1	NA	NA	NA	431	NM_001081237	232539	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	0.130000	0.746269	
mm_121569.1	chr14	122867746	122867946	+	1	NA	NA	NA	45319	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.010000	0.368159	
mm_95037.1	chr11	32221326	32221526	+	1	NA	NA	NA	867	NM_010117	13650	Mm.11545	NM_010117	ENSMUSG00000020282	Rhbdf1	C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242	rhomboid 5 homolog 1	protein-coding	0.045000	0.621891	
mm_62442.1	chr7	101382727	101382927	+	1	NA	NA	NA	-2699	NM_027180	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.015000	0.567164	
mm_111154.1	chr12	83424809	83425009	-	1	NA	NA	NA	62827	NM_001267626	70127	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0.035000	0.567164	-72(CCATATATAACC,+,0.00)
mm_132632.1	chr16	39025697	39025897	+	1	NA	NA	NA	123452	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.000000	0.447761	
mm_115457.1	chr13	119428284	119428484	+	1	NA	NA	NA	-216	NM_001079849	218693	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0.100000	0.666667	
mm_47725.1	chr5	130024219	130024419	-	1	NA	NA	NA	12	NM_133768	109900	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik	argininosuccinate lyase	protein-coding	0.035000	0.562189	
mm_64826.1	chr7	11988470	11988670	-	1	NA	NA	NA	-52729	NM_001166731	628946	Mm.484974	NM_001166731	ENSMUSG00000095864	Vmn1r77	Gm6935	vomeronasal 1 receptor 77	protein-coding	0.050000	0.482587	
mm_137868.1	chr17	31322047	31322247	+	1	NA	NA	NA	25923	NM_001242427	224674	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.030000	0.562189	
mm_150605.1	chr19	40830479	40830679	+	1	NA	NA	NA	-700	NM_172839	240665	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.010000	0.422886	
mm_97189.1	chr11	75572669	75572869	+	1	NA	NA	NA	-15310	NM_008850	18738	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.015000	0.542289	
mm_51685.1	chr6	86525158	86525358	+	1	NA	NA	NA	907	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.080000	0.631841	
mm_55162.1	chr6	51871143	51871343	-	1	NA	NA	NA	141306	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.000000	0.343284	83(TTGTATAAAAAG,-,0.00)
mm_148208.1	chr18	80151327	80151527	-	1	NA	NA	NA	55	NM_175028	240442	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0.165000	0.756219	
mm_143061.1	chr17	57011153	57011353	-	1	NA	NA	NA	35	NM_133801	98053	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0.055000	0.522388	
mm_24686.1	chr3	94974641	94974841	+	1	NA	NA	NA	10	NM_001293716	107650	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase, catalytic, beta polypeptide	protein-coding	0.050000	0.597015	
mm_41278.1	chr5	90247172	90247372	+	1	NA	NA	NA	-23276	NM_001163456	231430	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	0.005000	0.402985	
mm_59123.1	chr7	19911704	19911904	+	1	NA	NA	NA	9339	NM_027514	52118	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.040000	0.512438	
mm_151740.1	chr19	4989868	4990068	-	1	NA	NA	NA	3	NM_153553	225872	Mm.287867	NM_153553	ENSMUSG00000045903	Npas4	LE-PAS|Nxf	neuronal PAS domain protein 4	protein-coding	0.085000	0.666667	-67(GTCTCTAAAAAC,-,0.00),-34(AGCTATATAAGG,-,0.00)
mm_12547.1	chr2	72390664	72390864	+	1	NA	NA	NA	-85455	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.025000	0.552239	
mm_56560.1	chr6	101297119	101297319	-	1	NA	NA	NA	80678	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.015000	0.447761	
mm_105562.1	chr11	106506987	106507187	-	1	NA	NA	NA	6096	NR_030703	100216537		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.030000	0.537313	66(CTCCTTAAATGC,-,0.00),68(CCTTAAATGCTG,+,0.00)
mm_57086.1	chr6	122585040	122585240	-	1	NA	NA	NA	17304	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.015000	0.467662	
mm_69718.1	chr7	140208090	140208290	-	1	NA	NA	NA	-5422	NM_001011814	258055	Mm.377339	NM_001011814	ENSMUSG00000050366	Olfr524	MOR103-14P	olfactory receptor 524	protein-coding	0.030000	0.467662	
mm_105399.1	chr11	103403925	103404125	-	1	NA	NA	NA	8639	NM_183034	353047	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.010000	0.542289	-48(TTCCTTAAAAGC,-,0.00),-47(TCCTTAAAAGCC,+,0.00),-46(CCTTAAAAGCCA,+,0.00)
mm_32646.1	chr4	115057592	115057792	+	1	NA	NA	NA	-119	NM_001287388	21349	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.045000	0.597015	
mm_84273.1	chr9	62796413	62796613	-	1	NA	NA	NA	15135	NM_010193	14155	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.025000	0.487562	
mm_55938.1	chr6	84970381	84970581	-	1	NA	NA	NA	99032	NM_177077	75914	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	0.000000	0.422886	
mm_41633.1	chr5	97090735	97090935	+	1	NA	NA	NA	20761	NM_198422	231474	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.015000	0.388060	51(TTCTTTTTAAGC,-,0.00)
mm_156275.1	chrX	136836527	136836727	+	1	NA	NA	NA	13881	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.010000	0.437811	
mm_77524.1	chr8	122962547	122962747	-	1	NA	NA	NA	79637	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.000000	0.343284	
mm_119671.1	chr14	52580487	52580687	+	1	NA	NA	NA	-84892	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.005000	0.552239	
mm_79758.1	chr9	62377214	62377414	+	1	NA	NA	NA	35971	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.015000	0.562189	
mm_23346.1	chr3	54744403	54744603	+	1	NA	NA	NA	8964	NM_025442	66248	Mm.144218	NM_025442	ENSMUSG00000036632	Alg5	1500026A19Rik|2600005J22Rik|AV009521|AV170001|AW545564	asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)	protein-coding	0.030000	0.447761	
mm_89756.1	chr10	99306515	99306715	+	1	NA	NA	NA	43384	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.005000	0.313433	
mm_124072.1	chr14	78591929	78592129	-	1	NA	NA	NA	37261	NM_001253766	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.005000	0.338308	
mm_10028.1	chr1	192099690	192099890	-	1	NA	NA	NA	-7191	NM_011633	22033	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.005000	0.343284	
mm_135552.1	chr16	49847977	49848177	-	1	NA	NA	NA	-7577	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.010000	0.462687	-28(GACTTTAAAGAC,-,0.00)
mm_147065.1	chr18	35118709	35118909	-	1	NA	NA	NA	-103	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.135000	0.786070	
mm_36155.1	chr4	59781273	59781473	-	1	NA	NA	NA	2482	NM_001013577	66209	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	0.000000	0.412935	
mm_142048.1	chr17	35534063	35534263	-	1	NA	NA	NA	962	NM_020576	57390	Mm.34201	NM_020576	ENSMUSG00000024409	Psors1c2	AI448740|Pcg|SPR1	psoriasis susceptibility 1 candidate 2 (human)	protein-coding	0.000000	0.611940	
mm_64920.1	chr7	16247680	16247880	-	1	NA	NA	NA	-3626	NM_176912	319430	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	0.010000	0.398010	
mm_141817.1	chr17	34606556	34606756	-	1	NA	NA	NA	795	NM_001163379	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.040000	0.582090	
mm_67861.1	chr7	99049863	99050063	-	1	NA	NA	NA	91181	NM_178635	78610	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.030000	0.477612	
mm_82692.1	chr9	22376124	22376324	-	1	NA	NA	NA	2999	NR_030448	751551		NR_030448	ENSMUSG00000076117	Mir680-2	Mirn680-2	microRNA 680-2	ncRNA	0.015000	0.522388	
mm_95969.1	chr11	58917910	58918110	+	1	NA	NA	NA	-47	NM_138678	192194	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	0.020000	0.487562	
mm_20675.1	chr2	132253132	132253332	-	1	NA	NA	NA	-52	NM_011045	18538	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0.100000	0.646766	
mm_87628.1	chr10	58255401	58255601	+	1	NA	NA	NA	-25	NM_027375	70297	Mm.25531	NM_027375	ENSMUSG00000038039	Gcc2	0610043A03Rik|2210420P05Rik|2600014C01Rik|AW112121|mKIAA0336	GRIP and coiled-coil domain containing 2	protein-coding	0.130000	0.701493	
mm_38205.1	chr4	135855783	135855983	-	1	NA	NA	NA	-188	NM_001284196	14105	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0.120000	0.701493	
mm_155404.1	chrX	73342497	73342697	+	1	NA	NA	NA	-23	NM_031494	27081	Mm.26595	NM_031494	ENSMUSG00000031365	Zfp275	5430431L06Rik|AI593314|DXBay20|DXHXS52|DXPas8	zinc finger protein 275	protein-coding	0.110000	0.746269	
mm_114192.1	chr13	55784487	55784687	+	1	NA	NA	NA	8	NM_001252487	76856	Mm.159795	NM_029772	ENSMUSG00000021499	Catsper3	4921522D01Rik|CACRC	cation channel, sperm associated 3	protein-coding	0.010000	0.477612	-54(CCTCATAAAGCA,+,0.00)
mm_56291.1	chr6	91493073	91493273	-	1	NA	NA	NA	19422	NM_028766	74122	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	0.040000	0.567164	
mm_82561.1	chr9	21037685	21037885	-	1	NA	NA	NA	-5457	NR_035438	100316681		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0.100000	0.696517	
mm_130046.1	chr15	89137491	89137691	-	1	NA	NA	NA	3112	NM_013871	29857	Mm.38343	NM_013871	ENSMUSG00000022610	Mapk12	AW123708|Erk6|P38gamma|Prkm12|Sapk3	mitogen-activated protein kinase 12	protein-coding	0.020000	0.606965	
mm_151090.1	chr19	47731656	47731856	+	1	NA	NA	NA	0	NM_026377	67788	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	0.095000	0.671642	
mm_32196.1	chr4	101419242	101419442	+	1	NA	NA	NA	21	NM_001177604	11639	Mm.42040	NM_009647	ENSMUSG00000028527	Ak4	AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e	adenylate kinase 4	protein-coding	0.120000	0.736318	
mm_25930.1	chr3	131223733	131223933	+	1	NA	NA	NA	48268	NM_008212	15107	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.005000	0.363184	
mm_118953.1	chr14	27379505	27379705	+	1	NA	NA	NA	18216	NM_001289688	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.040000	0.557214	
mm_35929.1	chr4	53032225	53032425	-	1	NA	NA	NA	20445	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.025000	0.422886	
mm_172758.1	chr8	85949187	85949387	+	1	NA	NA	NA	108285	NM_199446	102093	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding	0.015000	0.467662	
mm_90943.1	chr10	12964165	12964365	-	1	NA	NA	NA	-6	NM_001163591	74732	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.115000	0.776119	
mm_27429.1	chr3	51553998	51554198	-	1	NA	NA	NA	-5659	NR_033624	100039684	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	0.020000	0.487562	
mm_52688.1	chr6	118084030	118084230	+	1	NA	NA	NA	-1062	NR_106011	102465632		NR_106011	ENSMUSG00000098583	Mir7044	Gm27354|mmu-mir-7044	microRNA 7044	ncRNA	0.005000	0.368159	-8(TTTTTTATGGGC,+,0.00)
mm_112794.1	chr13	20352840	20353040	+	1	NA	NA	NA	-120050	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.010000	0.482587	
mm_16197.1	chr2	173000055	173000255	+	1	NA	NA	NA	38	NM_175112	66679	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	0.125000	0.721393	
mm_104796.1	chr11	98772861	98773061	-	1	NA	NA	NA	2416	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.025000	0.577114	
mm_153921.1	chr19	47314612	47314812	-	1	NA	NA	NA	-41123	NR_105961	102466782		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.025000	0.601990	
mm_105325.1	chr11	102895830	102896030	-	1	NA	NA	NA	1270	NM_001131020	14580	Mm.1239	NM_010277	ENSMUSG00000020932	Gfap	AI836096	glial fibrillary acidic protein	protein-coding	0.030000	0.542289	
mm_60351.1	chr7	44359650	44359850	+	1	NA	NA	NA	15280	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.030000	0.502488	
mm_25616.1	chr3	118431432	118431632	+	1	NA	NA	NA	-2325	NR_029551	387155		NR_029551	ENSMUSG00000065569	Mir137	Mirn137|mir-137|mmu-mir-137	microRNA 137	ncRNA	0.035000	0.572139	
mm_19991.1	chr2	118715354	118715554	-	1	NA	NA	NA	-11491	NM_001081971	383787	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	0.020000	0.537313	
mm_49876.1	chr6	38592642	38592842	+	1	NA	NA	NA	37019	NM_001331223	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.025000	0.432836	
mm_27323.1	chr3	50367584	50367784	-	1	NA	NA	NA	75929	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.358209	
mm_124504.1	chr14	121879521	121879721	-	1	NA	NA	NA	-213	NR_130999	78312	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0.025000	0.442786	
mm_107234.1	chr12	26478125	26478325	+	1	NA	NA	NA	9010	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.015000	0.477612	
mm_101041.1	chr11	8612133	8612333	-	1	NA	NA	NA	52302	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.005000	0.353234	77(TCTTTAATGCCC,+,0.00)
mm_90180.1	chr10	119850645	119850845	+	1	NA	NA	NA	1645	NR_131760	78105	Mm.399086	NR_131760	ENSMUSG00000085418	Grip1os1	4930404E01Rik|4930483C13Rik	glutamate receptor interacting protein 1, opposite strand 1	ncRNA	0.010000	0.348259	-82(CTCTATTAAGGA,-,0.00)
mm_11606.1	chr2	33908579	33908779	+	1	NA	NA	NA	-20733	NM_175184	72543	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.015000	0.527363	
mm_108160.1	chr12	76367221	76367421	+	1	NA	NA	NA	2143	NM_001172104	109929	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0.025000	0.477612	
mm_47032.1	chr5	115732170	115732370	-	1	NA	NA	NA	-711	NM_001080808	75665	Mm.233914	NM_001080808	ENSMUSG00000041609	Ccdc64	2210403N09Rik|BICDR-1|Bicdl1	coiled-coil domain containing 64	protein-coding	0.175000	0.820896	
mm_144942.1	chr18	37768259	37768459	+	1	NA	NA	NA	2779	NM_033595	93724	Mm.247203	NM_033595	ENSMUSG00000102428	Pcdhga12	Pcdh13|pc2c	protocadherin gamma subfamily A, 12	protein-coding	0.075000	0.606965	
mm_137353.1	chr17	25240093	25240293	+	1	NA	NA	NA	23	NM_026676	68327	Mm.180687	NM_026676	ENSMUSG00000015126	Tsr3	0610007P22Rik|1110014B11Rik|AL022759	TSR3 20S rRNA accumulation	protein-coding	0.090000	0.582090	
mm_109008.1	chr12	103337017	103337217	+	1	NA	NA	NA	18884	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.000000	0.577114	
mm_77096.1	chr8	110846684	110846884	-	1	NA	NA	NA	19	NM_133953	101943	Mm.236123	NM_133953	ENSMUSG00000033732	Sf3b3	1810061H24Rik|5730409A01Rik|AA409318|D8Ertd633e|RSE1|SAP130|mKIAA0017	splicing factor 3b, subunit 3	protein-coding	0.085000	0.552239	
mm_162765.1	chr10	62553519	62553719	-	1	NA	NA	NA	24838	NM_028197	72320	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.015000	0.432836	
mm_133544.1	chr16	91225351	91225551	+	1	NA	NA	NA	-99	NM_016967	50913	Mm.37289	NM_016967	ENSMUSG00000039830	Olig2	AI604895|Bhlhb1|Olg-2|Oligo2|RK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding	0.085000	0.671642	88(AGCTATAAAAAC,-,0.00)
mm_83849.1	chr9	54501652	54501852	-	1	NA	NA	NA	-126	NM_172771	235380	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.235000	0.825871	
mm_105387.1	chr11	103363345	103363545	-	1	NA	NA	NA	247	NM_183288	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.055000	0.646766	
mm_20681.1	chr2	132513811	132514011	-	1	NA	NA	NA	23183	NR_028286	70371	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	0.005000	0.447761	
mm_5048.1	chr1	194749374	194749574	+	1	NA	NA	NA	129645	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	0.015000	0.517413	6(TCTTTTATACCT,+,0.00)
mm_173126.1	chrX	170002708	170002908	-	1	NA	NA	NA	-23891	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.025000	0.681592	
mm_70815.1	chr8	23095426	23095626	+	1	NA	NA	NA	37267	NR_102385	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.030000	0.393035	
mm_156033.1	chrX	107256073	107256273	+	1	NA	NA	NA	145	NM_001033251	213439	Mm.383562	NM_001033251	ENSMUSG00000073008	Gpr174	Gm376|Lypsr3	G protein-coupled receptor 174	protein-coding	0.000000	0.422886	
mm_70324.1	chr8	4257683	4257883	+	1	NA	NA	NA	1491	NM_183315	330695	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	0.020000	0.522388	
mm_51836.1	chr6	90301168	90301368	+	1	NA	NA	NA	-2	NM_177738	243535	Mm.233854	NM_177738	ENSMUSG00000049694	BC048671	-	cDNA sequence BC048671	protein-coding	0.005000	0.447761	
mm_38460.1	chr4	140581837	140582037	-	1	NA	NA	NA	66819	NM_001112723	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.020000	0.572139	
mm_39455.1	chr5	17574577	17574777	+	1	NA	NA	NA	-139	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.165000	0.791045	
mm_37943.1	chr4	133103768	133103968	-	1	NA	NA	NA	-26765	NM_153423	242687	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.025000	0.562189	
mm_69698.1	chr7	140036551	140036751	-	1	NA	NA	NA	23	NM_001286007	74237	Mm.40888	NM_133755	ENSMUSG00000025474	Tubgcp2	1700022B05Rik	tubulin, gamma complex associated protein 2	protein-coding	0.095000	0.661692	
mm_126643.1	chr15	83779960	83780160	+	1	NA	NA	NA	37	NM_172610	223726	Mm.36395	NM_172610	ENSMUSG00000041708	Mpped1	6230403M19|AW456965|D15Bwg0669e	metallophosphoesterase domain containing 1	protein-coding	0.170000	0.840796	
mm_108975.1	chr12	102646937	102647137	+	1	NA	NA	NA	37983	NR_035457	100316812		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.015000	0.606965	
mm_85618.1	chr9	107614685	107614885	-	1	NA	NA	NA	-5544	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.030000	0.592040	
mm_90232.1	chr10	121376134	121376334	+	1	NA	NA	NA	11144	NM_029364	75612	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.025000	0.562189	
mm_145677.1	chr18	61568253	61568453	+	1	NA	NA	NA	12771	NM_146087	93687	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0.010000	0.402985	
mm_173188.1	chrX	6071115	6071315	+	1	NA	NA	NA	12205	NM_001166433	102991	Mm.199793	NM_001033211	ENSMUSG00000073294	AU022751	AU023811	expressed sequence AU022751	protein-coding	0.020000	0.452736	
mm_117778.1	chr13	96671405	96671605	-	1	NA	NA	NA	-569	NM_008255	15357	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0.020000	0.512438	
mm_46693.1	chr5	110086247	110086447	-	1	NA	NA	NA	-13622	NM_207279	403178	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0.040000	0.537313	-98(GCTTTAAGGGAG,+,0.00),13(GCTTAAATGGAC,+,0.00)
mm_134592.1	chr16	20426294	20426494	-	1	NA	NA	NA	0	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.090000	0.611940	61(CGCTATAAAGGC,-,0.00)
mm_147669.1	chr18	60624199	60624399	-	1	NA	NA	NA	6	NM_177340	104027	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	0.120000	0.761194	
mm_35809.1	chr4	46650096	46650296	-	1	NA	NA	NA	3	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	0.105000	0.701493	
mm_147346.1	chr18	43322569	43322769	-	1	NA	NA	NA	50603	NM_001136086	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.005000	0.388060	
mm_160131.1	chr7	29231030	29231230	-	1	NA	NA	NA	1392	NM_001033525	52150	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	0.005000	0.407960	
mm_134091.1	chr16	9150757	9150957	-	1	NA	NA	NA	320757	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.025000	0.452736	
mm_82598.1	chr9	21312194	21312394	-	1	NA	NA	NA	39	NM_009678	11768	Mm.22239	NM_009678	ENSMUSG00000003309	Ap1m2	D9Ertd818e|[m]1B|mu1B	adaptor protein complex AP-1, mu 2 subunit	protein-coding	0.085000	0.646766	-75(CCTTTAAGACGC,+,0.00)
mm_120728.1	chr14	73142901	73143101	+	1	NA	NA	NA	216	NR_033185	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.090000	0.711443	
mm_85900.1	chr9	111055902	111056102	-	1	NA	NA	NA	1242	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.040000	0.537313	
mm_103694.1	chr11	79515867	79516067	-	1	NA	NA	NA	7795	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.005000	0.417910	
mm_134061.1	chr16	8362632	8362832	-	1	NA	NA	NA	62404	NM_029070	74720	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding	0.015000	0.502488	
mm_137835.1	chr17	30901463	30901663	+	1	NA	NA	NA	-304	NM_021332	14652	Mm.390969	NM_021332	ENSMUSG00000024027	Glp1r	GLP-1R|GLP1Rc	glucagon-like peptide 1 receptor	protein-coding	0.065000	0.661692	
mm_64387.1	chr7	142476952	142477152	+	1	NA	NA	NA	39	NM_001271523	16985	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.030000	0.597015	
mm_108316.1	chr12	79642925	79643125	+	1	NA	NA	NA	281708	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.000000	0.437811	
mm_128123.1	chr15	31318406	31318606	-	1	NA	NA	NA	49253	NM_001164441	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.000000	0.432836	-75(GGATTTAAAAAG,-,0.00)
mm_86228.1	chr9	120136220	120136420	-	1	NA	NA	NA	5886	NR_002902	104433	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	0.005000	0.587065	
mm_126632.1	chr15	83523882	83524082	+	1	NA	NA	NA	-2880	NM_007546	12124	Mm.267006	NM_007546	ENSMUSG00000016758	Bik	Biklk|Blk|Nbk	BCL2-interacting killer	protein-coding	0.015000	0.477612	-31(GCTTTTAAATAC,+,0.00)
mm_103284.1	chr11	72214991	72215191	-	1	NA	NA	NA	-47	NM_001163728	75304	Mm.340776	NM_001163728		4930563E22Rik	-	RIKEN cDNA 4930563E22 gene	protein-coding	0.105000	0.636816	
mm_68730.1	chr7	120670147	120670347	-	1	NA	NA	NA	3	NM_001040137	67983	Mm.394441	NM_001040136	ENSMUSG00000030887	Pdzd9	4930408O21Rik	PDZ domain containing 9	protein-coding	0.030000	0.542289	
mm_41009.1	chr5	81020787	81020987	+	1	NA	NA	NA	316	NM_001347369	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.070000	0.621891	
mm_96940.1	chr11	70540083	70540283	+	1	NA	NA	NA	-89	NM_008876	18806	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	0.100000	0.766169	
mm_100118.1	chr11	115882844	115883044	+	1	NA	NA	NA	-17195	NM_183259	66528	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	0.005000	0.582090	
mm_57980.1	chr6	135731165	135731365	-	1	NA	NA	NA	72352	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	0.030000	0.407960	
mm_116334.1	chr13	38037847	38038047	-	1	NA	NA	NA	958	NM_024242	71340	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1 (yeast)	protein-coding	0.030000	0.492537	
mm_25580.1	chr3	116862722	116862922	+	1	NA	NA	NA	1142	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.000000	0.333333	
mm_50243.1	chr6	42351771	42351971	+	1	NA	NA	NA	2043	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.005000	0.562189	
mm_112895.1	chr13	20885225	20885425	+	1	NA	NA	NA	91212	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.368159	
mm_86947.1	chr10	24842233	24842433	+	1	NA	NA	NA	-6138	NM_134005	209558	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	0.000000	0.482587	
mm_127029.1	chr15	96288788	96288988	+	1	NA	NA	NA	1366	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.015000	0.487562	
mm_78272.1	chr9	22003336	22003536	+	1	NA	NA	NA	448	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.050000	0.557214	
mm_29894.1	chr3	131321283	131321483	-	1	NA	NA	NA	-18156	NM_027816	71519	Mm.473179	NM_027816	ENSMUSG00000027983	Cyp2u1	8430436A10Rik	cytochrome P450, family 2, subfamily u, polypeptide 1	protein-coding	0.020000	0.383085	
mm_141185.1	chr17	26939185	26939385	-	1	NA	NA	NA	173	NR_104458	67675	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	0.065000	0.572139	
mm_146372.1	chr18	82584668	82584868	+	1	NA	NA	NA	30260	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.030000	0.621891	
mm_73135.1	chr8	94976786	94976986	+	1	NA	NA	NA	-223	NM_001198894	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.010000	0.611940	
mm_129997.1	chr15	86185915	86186115	-	1	NA	NA	NA	126	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.060000	0.676617	
mm_172318.1	chr7	106215263	106215463	-	1	NA	NA	NA	-23	NM_029000	74558	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0.005000	0.507463	9(CCTCATAGAGCC,+,0.00)
mm_49719.1	chr6	34598424	34598624	+	1	NA	NA	NA	20	NM_001347100	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.010000	0.522388	
mm_73426.1	chr8	106135346	106135546	+	1	NA	NA	NA	46	NR_040346	69771	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.035000	0.601990	
mm_33486.1	chr4	130822562	130822762	+	1	NA	NA	NA	30125	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.035000	0.577114	-66(CCTTTTAAGCTG,+,0.00)
mm_116374.1	chr13	40738280	40738480	-	1	NA	NA	NA	-3460	NM_001301674	21418	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.035000	0.557214	
mm_117844.1	chr13	98693032	98693232	-	1	NA	NA	NA	1699	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.000000	0.422886	
mm_80753.1	chr9	95407332	95407532	+	1	NA	NA	NA	-162	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.085000	0.691542	
mm_168344.1	chr11	120823979	120824179	-	1	NA	NA	NA	468	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.135000	0.716418	-63(CGGTTTAAATAG,-,0.00),-61(GTTTAAATAGCG,+,0.00)
mm_80130.1	chr9	70656137	70656337	+	1	NA	NA	NA	937	NM_172772	235461	Mm.170855	NM_172772	ENSMUSG00000042444	Fam63b	AI465301|B230380D07Rik|mKIAA1164	family with sequence similarity 63, member B	protein-coding	0.005000	0.477612	
mm_74137.1	chr8	123212923	123213123	+	1	NA	NA	NA	165	NM_177279	320869	Mm.258354	NM_177279	ENSMUSG00000048478	Spata33	4732415M23Rik|AI847264	spermatogenesis associated 33	protein-coding	0.095000	0.641791	
mm_143908.1	chr17	85088460	85088660	-	1	NA	NA	NA	1707	NM_145984	213760	Mm.259035	NM_145984	ENSMUSG00000024127	Prepl	2810457N15Rik|9530014L06Rik|D030028O16Rik|mKIAA0436	prolyl endopeptidase-like	protein-coding	0.030000	0.477612	
mm_97375.1	chr11	77693478	77693678	+	1	NA	NA	NA	7439	NM_001024205	68564	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0.000000	0.333333	-70(GTCCCTTAAAGG,-,0.00)
mm_38103.1	chr4	134372482	134372682	-	1	NA	NA	NA	-35	NM_019578	56219	Mm.30978	NM_019578	ENSMUSG00000028838	Extl1	D430033M16Rik	exostoses (multiple)-like 1	protein-coding	0.035000	0.597015	
mm_19374.1	chr2	91194678	91194878	-	1	NA	NA	NA	257	NM_013839	22259	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0.035000	0.606965	
mm_158420.1	chrX	139085118	139085318	-	1	NA	NA	NA	18	NM_177920	331535	Mm.211704	NM_177920	ENSMUSG00000031271	Serpina7	C730040N12Rik|Tbg	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7	protein-coding	0.000000	0.412935	
mm_134403.1	chr16	17576127	17576327	-	1	NA	NA	NA	444	NM_144852	224022	Mm.298878	NM_144852	ENSMUSG00000022756	Slc7a4	AI853530	solute carrier family 7 (cationic amino acid transporter, y+ system), member 4	protein-coding	0.020000	0.557214	
mm_16367.1	chr2	175869188	175869388	+	1	NA	NA	NA	43	NM_001164689	626832	Mm.441314	NM_001164689	ENSMUSG00000078887	Gm6710	1600017I02Rik|2310011F05Rik|2900089K14Rik|3100002L24Rik|WF-4	predicted gene 6710	protein-coding	0.015000	0.502488	
mm_102638.1	chr11	62573984	62574184	-	1	NA	NA	NA	-402	NM_011706	22368	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0.000000	0.293532	
mm_137140.1	chr17	23610378	23610578	+	1	NA	NA	NA	9652	NM_001289482	332221	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	0.070000	0.636816	
mm_129787.1	chr15	82806714	82806914	-	1	NA	NA	NA	-12569	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.005000	0.293532	
mm_125916.1	chr15	76117695	76117895	+	1	NA	NA	NA	2400	NM_144848	223650	Mm.259929	NM_144848		Eppk1	6230424I18Rik|EPIPL|EPIPL1|EPPK	epiplakin 1	protein-coding	0.005000	0.557214	-34(GCCCAGAAAAGG,-,0.00)
mm_101848.1	chr11	48826636	48826836	-	1	NA	NA	NA	598	NM_053166	94089	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.090000	0.567164	
mm_11669.1	chr2	35283903	35284103	+	1	NA	NA	NA	1623	NM_146120	227753	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.015000	0.552239	
mm_172027.1	chr6	122794195	122794395	+	1	NA	NA	NA	-25889	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.010000	0.437811	
mm_132975.1	chr16	52049557	52049757	+	1	NA	NA	NA	18108	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.005000	0.442786	
mm_163270.1	chr11	115187470	115187670	+	1	NA	NA	NA	83	NM_001033393	320534	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	0.070000	0.666667	
mm_92722.1	chr10	80807547	80807747	-	1	NA	NA	NA	2399	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.070000	0.676617	
mm_172888.1	chr9	53690211	53690411	-	1	NA	NA	NA	15921	NM_175562	270160	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0.045000	0.447761	
mm_93721.1	chr10	119239425	119239625	-	1	NA	NA	NA	530	NM_027994	71902	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	0.105000	0.781095	
mm_122311.1	chr14	36906220	36906420	-	1	NA	NA	NA	13215	NM_001347503	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.025000	0.542289	
mm_86788.1	chr10	20203511	20203711	+	1	NA	NA	NA	-1757	NR_045350	73811	Mm.55644	NR_045350	ENSMUSG00000110754	4930405J17Rik	-	RIKEN cDNA 4930405J17 gene	ncRNA	0.020000	0.472637	
mm_121492.1	chr14	121830851	121831051	+	1	NA	NA	NA	-33217	NM_134074	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.025000	0.437811	
mm_54884.1	chr6	43076883	43077083	-	1	NA	NA	NA	-38761	NM_146655	258649	Mm.271494	NM_146655	ENSMUSG00000094669	Olfr441	MOR261-3	olfactory receptor 441	protein-coding	0.000000	0.477612	
mm_53125.1	chr6	125130372	125130572	+	1	NA	NA	NA	-1411	NM_138747	110109	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	0.015000	0.427861	
mm_5496.1	chr1	36943726	36943926	-	1	NA	NA	NA	-4299	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.015000	0.542289	
mm_3790.1	chr1	157412281	157412481	+	1	NA	NA	NA	29	NR_027984	69953	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	0.130000	0.786070	
mm_114577.1	chr13	75640060	75640260	+	1	NA	NA	NA	-4886	NR_030451	751556		NR_030451	ENSMUSG00000076236	Mir682	Mirn682|mir-682|mmu-mir-682	microRNA 682	ncRNA	0.000000	0.487562	
mm_112912.1	chr13	20922845	20923045	+	1	NA	NA	NA	128832	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.422886	
mm_156920.1	chrX	169122200	169122400	+	1	NA	NA	NA	9422	NM_001287530	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.000000	0.343284	
mm_154365.1	chrM	8508	8708	+	1	NA	NA	NA	NA	NA									0.005000	0.368159	60(CCTTTTCAGCCC,+,0.00)
mm_49687.1	chr6	33375122	33375322	+	1	NA	NA	NA	126072	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.005000	0.452736	
mm_165295.1	chr2	91096816	91097016	+	1	NA	NA	NA	238	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.045000	0.641791	
mm_140795.1	chr17	21450165	21450365	-	1	NA	NA	NA	-109	NM_001308323	22709	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	0.035000	0.592040	
mm_67133.1	chr7	72248859	72249059	-	1	NA	NA	NA	57636	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.015000	0.432836	-97(TCTTATAGAGAA,+,0.00)
mm_159301.1	chr2	177464670	177464870	+	1	NA	NA	NA	28	NM_001177568	628308	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420|OTTMUSG00000016588	zinc finger protein 970	protein-coding	0.010000	0.502488	
mm_26985.1	chr3	25697875	25698075	-	1	NA	NA	NA	455332	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.338308	
mm_124453.1	chr14	118937656	118937856	-	1	NA	NA	NA	-176	NM_008929	100037258	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.125000	0.721393	
mm_114263.1	chr13	57282255	57282455	+	1	NA	NA	NA	-386566	NM_001302373	26946	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding	0.045000	0.597015	
mm_163359.1	chr12	29528025	29528225	-	1	NA	NA	NA	-259	NM_001093775	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.005000	0.417910	
mm_48556.1	chr5	143112879	143113079	-	1	NA	NA	NA	41	NM_207110	108086	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.130000	0.681592	
mm_11270.1	chr2	30061753	30061953	+	1	NA	NA	NA	-143	NM_023871	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.070000	0.686567	
mm_78070.1	chr9	15313713	15313913	+	1	NA	NA	NA	1202	NR_106108	102465758		NR_106108	ENSMUSG00000105847	Gm25500	Mir7650|mmu-mir-7650	predicted gene, 25500	ncRNA	0.025000	0.432836	-59(CCATATAAAAGA,-,0.00)
mm_74224.1	chr8	124066683	124066883	+	1	NA	NA	NA	43310	NM_001029876	382038	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	0.005000	0.517413	
mm_172189.1	chr6	50566428	50566628	-	1	NA	NA	NA	-54	NM_007808	13063	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0.145000	0.661692	
mm_135660.1	chr16	52404337	52404537	-	1	NA	NA	NA	48644	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.288557	
mm_21403.1	chr2	157997063	157997263	-	1	NA	NA	NA	12197	NM_029282	75425	Mm.29068	NM_029282	ENSMUSG00000027650	Tti1	2610036D13Rik|AI449463	TELO2 interacting protein 1	protein-coding	0.025000	0.507463	
mm_124938.1	chr15	12240356	12240556	+	1	NA	NA	NA	35362	NM_172958	268783	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.020000	0.422886	
mm_146932.1	chr18	32036880	32037080	-	1	NA	NA	NA	-49	NM_032394	17922	Mm.440013	NM_032394	ENSMUSG00000024388	Myo7b	-	myosin VIIB	protein-coding	0.010000	0.517413	
mm_156368.1	chrX	139610522	139610722	+	1	NA	NA	NA	2	NM_023270	66889	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	0.115000	0.721393	
mm_144605.1	chr18	32397548	32397748	+	1	NA	NA	NA	-19364	NR_045403	402767	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.025000	0.557214	
mm_63445.1	chr7	127489966	127490166	+	1	NA	NA	NA	815	NR_106027	102465642		NR_106027	ENSMUSG00000098267	Mir7060	Gm27515|mmu-mir-7060	microRNA 7060	ncRNA	0.020000	0.621891	
mm_7460.1	chr1	120449576	120449776	-	1	NA	NA	NA	55408	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.000000	0.492537	
mm_76533.1	chr8	87959446	87959646	-	1	NA	NA	NA	49	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	0.105000	0.726368	
mm_137381.1	chr17	25756559	25756759	+	1	NA	NA	NA	-2332	NM_018857	56047	Mm.17510	NM_018857	ENSMUSG00000063011	Msln	MPF	mesothelin	protein-coding	0.010000	0.547264	
mm_173367.1	chrY	90820600	90820800	+	1	NA	NA	NA	18706	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.015000	0.467662	
mm_158870.1	chrY	1245660	1245860	-	1	NA	NA	NA	-1	NM_009484	22290	Mm.20477	NM_009484	ENSMUSG00000068457	Uty	Hydb|mKIAA4057	ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	protein-coding	0.055000	0.462687	
mm_104963.1	chr11	100145827	100146027	-	1	NA	NA	NA	-1	NM_008471	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.035000	0.567164	-33(GGGCATAAAAAG,-,0.00),-31(GCATAAAAAGCC,+,0.00)
mm_167067.1	chr7	98112635	98112835	-	1	NA	NA	NA	-3487	NM_001256083	17921	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.020000	0.537313	
mm_72437.1	chr8	83087824	83088024	+	1	NA	NA	NA	-77428	NM_001111304	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.000000	0.492537	
mm_94960.1	chr11	30771717	30771917	+	1	NA	NA	NA	42	NM_134013	103554	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	0.150000	0.791045	
mm_86304.1	chr9	122351393	122351593	-	1	NA	NA	NA	-123	NM_026179	67469	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0.085000	0.636816	-10(GACCATTAATGC,-,0.00)
mm_28214.1	chr3	88384362	88384562	-	1	NA	NA	NA	4	NM_007541	12096	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	0.015000	0.557214	-34(GGATATAAATGC,-,0.00)
mm_51364.1	chr6	72636205	72636405	+	1	NA	NA	NA	6474	NR_040421	100038714	Mm.321330	NR_040421		Gm15401	ENSMUSG00000072999|OTTMUSG00000021199	predicted gene 15401	ncRNA	0.020000	0.567164	
mm_146978.1	chr18	33832649	33832849	-	1	NA	NA	NA	37857	NR_038151	69749	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.025000	0.457711	
mm_110372.1	chr12	40199404	40199604	-	1	NA	NA	NA	-189	NM_001033437	380755	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	0.030000	0.472637	33(TTGTTTTAAAGC,-,0.00)
mm_58158.1	chr6	142472763	142472963	-	1	NA	NA	NA	246	NM_145572	232493	Mm.275975	NM_145572	ENSMUSG00000030244	Gys2	BC021322|LGS	glycogen synthase 2	protein-coding	0.025000	0.567164	
mm_50982.1	chr6	62165865	62166065	+	1	NA	NA	NA	-985155	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA	0.000000	0.313433	13(GCTTTTATGCTT,+,0.00),31(CTCTTTAAATGC,-,0.00)
mm_37648.1	chr4	128786122	128786322	-	1	NA	NA	NA	19890	NM_001081098	230761	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.020000	0.562189	
mm_76010.1	chr8	72835902	72836102	-	1	NA	NA	NA	74343	NM_007975	14065	Mm.12948	NM_007975	ENSMUSG00000050147	F2rl3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding	0.005000	0.477612	
mm_35151.1	chr4	11966315	11966515	-	1	NA	NA	NA	35	NM_001098230	381511	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	0.105000	0.751244	
mm_144665.1	chr18	34408390	34408590	+	1	NA	NA	NA	-933	NM_001163004	53871	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	0.025000	0.472637	-36(GACCATTTAAAG,-,0.00),-34(CCATTTAAAGTC,+,0.00)
mm_15650.1	chr2	163122570	163122770	+	1	NA	NA	NA	-33069	NM_026630	68236	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	0.025000	0.502488	
mm_69945.1	chr7	142190351	142190551	-	1	NA	NA	NA	-10913	NM_023860	77215	Mm.462993	NM_023860	ENSMUSG00000046248	Krtap5-3	A030007E19Rik	keratin associated protein 5-3	protein-coding	0.005000	0.537313	
mm_114700.1	chr13	83504207	83504407	+	1	NA	NA	NA	273	NM_001347564	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.015000	0.467662	
mm_29146.1	chr3	105932543	105932743	-	1	NA	NA	NA	21	NM_001033780	433638	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	0.015000	0.447761	
mm_1146.1	chr1	60746391	60746591	+	1	NA	NA	NA	103	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.000000	0.482587	
mm_43120.1	chr5	124796274	124796474	+	1	NA	NA	NA	65847	NM_144819	215707	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.040000	0.537313	
mm_143782.1	chr17	81730834	81731034	-	1	NA	NA	NA	7453	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.015000	0.462687	
mm_105410.1	chr11	103627549	103627749	-	1	NA	NA	NA	11225	NM_027083	69444	Mm.275677	NM_027083	ENSMUSG00000020945	Lyzl6	1700023H08Rik|Lyc1|Lyzb	lysozyme-like 6	protein-coding	0.080000	0.631841	
mm_107876.1	chr12	69963363	69963563	+	1	NA	NA	NA	54	NR_036607	100040999	Mm.394588	NR_036607	ENSMUSG00000079076	Gm3086	-	RuvB-like protein 1 pseudogene	pseudo	0.020000	0.383085	
mm_83779.1	chr9	52141658	52141858	-	1	NA	NA	NA	26135	NR_105750	102465150		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	0.015000	0.437811	-32(CTCTTTAAAAGT,-,0.00),-31(TCTTTAAAAGTA,+,0.00)
mm_113817.1	chr13	46725359	46725559	+	1	NA	NA	NA	2390	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.010000	0.422886	
mm_57481.1	chr6	125236911	125237111	-	1	NA	NA	NA	16	NM_001033126	21940	Mm.367714	NM_001033126	ENSMUSG00000030336	Cd27	S152|Tnfrsf7|Tp55	CD27 antigen	protein-coding	0.025000	0.542289	
mm_159885.1	chr6	24108529	24108729	-	1	NA	NA	NA	59463	NM_019481	55961	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0.015000	0.422886	
mm_64723.1	chr7	4658905	4659105	-	1	NA	NA	NA	-55	NM_172894	243819	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.115000	0.706468	
mm_129704.1	chr15	81726150	81726350	-	1	NA	NA	NA	3669	NM_011241	19387	Mm.270975	NM_011241	ENSMUSG00000022391	Rangap1	C79654|Fug1|mKIAA1835	RAN GTPase activating protein 1	protein-coding	0.015000	0.557214	
mm_163514.1	chr12	113427412	113427612	-	1	NA	NA	NA	-62053	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.462687	
mm_81330.1	chr9	108516891	108517091	+	1	NA	NA	NA	-96	NM_001114119	69232	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik	glutamine-rich 1	protein-coding	0.085000	0.671642	
mm_171617.1	chr4	150570163	150570363	+	1	NA	NA	NA	81911	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.025000	0.417910	
mm_76966.1	chr8	106210833	106211033	-	1	NA	NA	NA	0	NM_001007567	66432	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	0.145000	0.706468	
mm_102849.1	chr11	69369726	69369926	-	1	NA	NA	NA	-400	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.020000	0.437811	-70(CTTTATAGAGGG,+,0.00)
mm_154785.1	chrX	13071058	13071258	+	1	NA	NA	NA	-340	NM_009481	22284	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	0.065000	0.621891	
mm_25185.1	chr3	103356713	103356913	+	1	NA	NA	NA	77520	NM_001079830	94093	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.010000	0.328358	
mm_115279.1	chr13	111797156	111797356	+	1	NA	NA	NA	11727	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.010000	0.601990	
mm_125406.1	chr15	41710526	41710726	+	1	NA	NA	NA	-78408	NM_001130165	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.015000	0.447761	
mm_2742.1	chr1	128590877	128591077	+	1	NA	NA	NA	1322	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.055000	0.606965	
mm_89289.1	chr10	87892404	87892604	+	1	NA	NA	NA	31393	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.000000	0.447761	83(AGCCATTAAAGA,-,0.00)
mm_151679.1	chr19	4257508	4257708	-	1	NA	NA	NA	6270	NR_105951	102465595		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	0.050000	0.537313	
mm_33786.1	chr4	134922966	134923166	+	1	NA	NA	NA	-559	NM_023665	27981	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.050000	0.587065	
mm_22250.1	chr2	174853121	174853321	-	1	NA	NA	NA	92602	NM_007903	13616	Mm.9478	NM_007903	ENSMUSG00000027524	Edn3	ET-3|PPET3|ls|tmgc48	endothelin 3	protein-coding	0.025000	0.487562	
mm_164643.1	chr17	35122630	35122830	+	1	NA	NA	NA	-222	NM_032460	81845	Mm.7405	NM_032460	ENSMUSG00000092417	Gpank1	Bat-4|Bat4|D17H6S54E|G5	G patch domain and ankyrin repeats 1	protein-coding	0.005000	0.343284	
mm_123918.1	chr14	73363033	73363233	-	1	NA	NA	NA	22138	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.015000	0.398010	
mm_79641.1	chr9	59557983	59558183	+	1	NA	NA	NA	18543	NM_010421	15211	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.015000	0.482587	
mm_153343.1	chr19	38819099	38819299	-	1	NA	NA	NA	38	NM_021315	57753	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	0.085000	0.631841	
mm_136861.1	chr17	12821446	12821646	+	1	NA	NA	NA	46597	NM_008552	17171	Mm.425994	NM_008552	ENSMUSG00000068037	Mas1	Mas-1|Mgra	MAS1 oncogene	protein-coding	0.005000	0.398010	53(GCCCTTAAAGAG,-,0.00),55(CCTTAAAGAGGA,+,0.00)
mm_131226.1	chr16	10170122	10170322	+	1	NA	NA	NA	-6	NM_026594	68172	Mm.23690	NM_026594	ENSMUSG00000039209	Rpl39l	4930517K11Rik	ribosomal protein L39-like	protein-coding	0.075000	0.601990	
mm_15886.1	chr2	164839644	164839844	+	1	NA	NA	NA	5971	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.030000	0.611940	
mm_65640.1	chr7	27929378	27929578	-	1	NA	NA	NA	-48	NM_028538	73430	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	0.065000	0.587065	-35(CCCTTTAAGCGC,+,0.00)
mm_35646.1	chr4	43523587	43523787	-	1	NA	NA	NA	-133	NM_001277875	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.065000	0.686567	
mm_94512.1	chr11	8569754	8569954	+	1	NA	NA	NA	94681	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.015000	0.492537	
mm_65761.1	chr7	28631490	28631690	-	1	NA	NA	NA	-575	NM_175319	101744	Mm.26022	NM_175319	ENSMUSG00000037469	Acp7	AU017076|C330005M16Rik|Papl	acid phosphatase 7, tartrate resistant	protein-coding	0.030000	0.497512	
mm_157574.1	chrX	52613819	52614019	-	1	NA	NA	NA	55	NM_016697	14734	Mm.22515	NM_016697	ENSMUSG00000055653	Gpc3	OCI-5	glypican 3	protein-coding	0.095000	0.681592	
mm_13030.1	chr2	91054039	91054239	+	1	NA	NA	NA	123	NM_008948	19182	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	0.110000	0.651741	
mm_3459.1	chr1	150103903	150104103	+	1	NA	NA	NA	3972	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.527363	
mm_97186.1	chr11	75572372	75572572	+	1	NA	NA	NA	-15607	NM_008850	18738	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.025000	0.592040	
mm_101962.1	chr11	50300924	50301124	-	1	NA	NA	NA	-8688	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.010000	0.492537	
mm_25584.1	chr3	116878412	116878612	+	1	NA	NA	NA	16832	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.020000	0.358209	
mm_119588.1	chr14	50930050	50930250	+	1	NA	NA	NA	699	NM_001310506	219024	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161	transmembrane protein 55b	protein-coding	0.030000	0.492537	
mm_82731.1	chr9	25151706	25151906	-	1	NA	NA	NA	-25	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.120000	0.756219	
mm_40618.1	chr5	64803456	64803656	+	1	NA	NA	NA	33	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.115000	0.761194	
mm_141021.1	chr17	25136400	25136600	-	1	NA	NA	NA	-131	NM_001317404	26373	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.005000	0.582090	
mm_39799.1	chr5	30622416	30622616	+	1	NA	NA	NA	-25420	NR_049199	100885838		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.115000	0.701493	
mm_37144.1	chr4	116993595	116993795	-	1	NA	NA	NA	718	NM_009478	22275	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	0.035000	0.542289	
mm_40135.1	chr5	35045180	35045380	+	1	NA	NA	NA	3771	NM_019447	54426	Mm.27369	NM_019447	ENSMUSG00000029102	Hgfac	HGFA	hepatocyte growth factor activator	protein-coding	0.040000	0.611940	
mm_66892.1	chr7	59288582	59288782	-	1	NA	NA	NA	35467	NR_015479	330544	Mm.9002	NR_015479	ENSMUSG00000100826	C230091D08Rik	-	RIKEN cDNA C230091D08 gene	ncRNA	0.010000	0.328358	
mm_151715.1	chr19	4625535	4625735	-	1	NA	NA	NA	-18	NM_023131	19671	Mm.391143	NM_023131	ENSMUSG00000024889	Rce1	D19Ertd283e|D19Ertd98e	Ras converting CAAX endopeptidase 1	protein-coding	0.160000	0.721393	
mm_114659.1	chr13	78118134	78118334	+	1	NA	NA	NA	78215	NM_001347538	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.020000	0.502488	
mm_120835.1	chr14	75177727	75177927	+	1	NA	NA	NA	41402	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.000000	0.378109	
mm_13021.1	chr2	91035493	91035693	+	1	NA	NA	NA	-34	NM_009023	19400	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	0.020000	0.606965	
mm_73275.1	chr8	104595259	104595459	+	1	NA	NA	NA	3891	NM_001024606	382051	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0.020000	0.398010	78(TCCTTTATAAGA,-,0.00)
mm_32573.1	chr4	109978748	109978948	+	1	NA	NA	NA	823	NM_172296	242620	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0.010000	0.522388	
mm_9273.1	chr1	171634014	171634214	-	1	NA	NA	NA	7786	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.005000	0.432836	
mm_107431.1	chr12	35724501	35724701	+	1	NA	NA	NA	-29483	NR_045050	71581	Mm.100110	NR_045050		9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	0.005000	0.482587	
mm_100788.1	chr11	4849309	4849509	-	1	NA	NA	NA	135	NM_001252250	18016	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	0.145000	0.746269	
mm_68720.1	chr7	120103120	120103320	-	1	NA	NA	NA	794	NM_145586	233806	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	0.075000	0.592040	
mm_36787.1	chr4	103026631	103026831	-	1	NA	NA	NA	-3	NM_011831	23919	Mm.100163	NM_011831	ENSMUSG00000066090	Insl5	RIF2	insulin-like 5	protein-coding	0.005000	0.447761	-49(TGGTATAAATGG,-,0.00)
mm_160328.1	chr8	3854185	3854385	-	1	NA	NA	NA	1	NM_130905	170780	Mm.52281	NM_130905	ENSMUSG00000040197	Cd209e	SIGNR4|mSIGNR4	CD209e antigen	protein-coding	0.005000	0.472637	
mm_142955.1	chr17	56117483	56117683	-	1	NA	NA	NA	-35	NM_025874	66968	Mm.254985	NM_025874	ENSMUSG00000011305	Plin5	2310076L09Rik|AI415325|AW109675|Lsdp5|MLDP|PAT-1	perilipin 5	protein-coding	0.085000	0.711443	
mm_89398.1	chr10	90314654	90314854	+	1	NA	NA	NA	-260973	NM_001177397	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.005000	0.293532	
mm_116314.1	chr13	37103885	37104085	-	1	NA	NA	NA	-53741	NM_001166391	74145	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0.010000	0.467662	
mm_22611.1	chr3	14533742	14533942	+	1	NA	NA	NA	54	NM_028915	71710	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	0.110000	0.681592	
mm_102887.1	chr11	69411609	69411809	-	1	NA	NA	NA	1966	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.085000	0.696517	
mm_128605.1	chr15	58352639	58352839	-	1	NA	NA	NA	-28570	NM_177755	268807	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	0.040000	0.542289	
mm_15716.1	chr2	164047273	164047473	+	1	NA	NA	NA	22149	NM_001114079	381404	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	0.045000	0.651741	
mm_48656.1	chr5	145873417	145873617	-	1	NA	NA	NA	6337	NM_007818	13112	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	0.020000	0.482587	
mm_148148.1	chr18	77498103	77498303	-	1	NA	NA	NA	66933	NM_001164504	225743	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0.000000	0.432836	
mm_142785.1	chr17	50157303	50157503	-	1	NA	NA	NA	33094	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.005000	0.388060	-83(GCTTTTAAACAG,+,0.00),-35(TCCTATAAAAAC,-,0.00)
mm_95816.1	chr11	55136928	55137128	+	1	NA	NA	NA	14678	NM_172258	215332	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0.030000	0.517413	
mm_73849.1	chr8	117701735	117701935	+	1	NA	NA	NA	-111	NM_008290	15486	Mm.276466	NM_008290	ENSMUSG00000031844	Hsd17b2	AI194836|AI194967|AI255511	hydroxysteroid (17-beta) dehydrogenase 2	protein-coding	0.020000	0.497512	
mm_37470.1	chr4	123564529	123564729	-	1	NA	NA	NA	-51791	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.010000	0.532338	
mm_98548.1	chr11	95010378	95010578	+	1	NA	NA	NA	599	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.090000	0.686567	
mm_69603.1	chr7	137125606	137125806	-	1	NA	NA	NA	-108977	NR_045885	100038555	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	ENSMUSG00000073800	predicted gene 10578	ncRNA	0.025000	0.552239	
mm_163211.1	chr11	99772815	99773015	-	1	NA	NA	NA	-2	NM_001126322	100040276	Mm.475095	NM_001126322	ENSMUSG00000078668	Gm11595	OTTMUSG00000002543	predicted gene 11595	protein-coding	0.000000	0.482587	-32(GGGTATAAAAGG,-,0.00)
mm_48058.1	chr5	136565999	136566199	-	1	NA	NA	NA	-118	NM_001291233	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.080000	0.661692	
mm_6398.1	chr1	72861408	72861608	-	1	NA	NA	NA	13357	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.025000	0.462687	24(GACTTTATAGGC,-,0.00)
mm_74695.1	chr8	15045969	15046169	-	1	NA	NA	NA	9	NR_037972	434285	Mm.334425	NM_001007591	ENSMUSG00000049008	BB014433	-	expressed sequence BB014433	ncRNA	0.025000	0.492537	
mm_128468.1	chr15	50821625	50821825	-	1	NA	NA	NA	67324	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.015000	0.427861	
mm_3735.1	chr1	155116970	155117170	+	1	NA	NA	NA	-17434	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.010000	0.502488	
mm_34109.1	chr4	139193143	139193343	+	1	NA	NA	NA	344	NM_001037761	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.055000	0.681592	
mm_48178.1	chr5	137314094	137314294	-	1	NA	NA	NA	47	NM_011639	22051	Mm.27063	NM_011639	ENSMUSG00000023348	Trip6	-	thyroid hormone receptor interactor 6	protein-coding	0.040000	0.601990	
mm_35363.1	chr4	32405982	32406182	-	1	NA	NA	NA	-11353	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.000000	0.452736	
mm_130315.1	chr15	97247150	97247350	-	1	NA	NA	NA	37	NM_001164563	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.185000	0.835821	-34(CGGGATAAAAGG,-,0.00)
mm_97456.1	chr11	78194714	78194914	+	1	NA	NA	NA	1422	NM_001045516	216974	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	0.050000	0.606965	
mm_171066.1	chr3	112840272	112840472	-	1	NA	NA	NA	316355	NM_001190404	545562	Mm.462977	NM_001190403		Amy2b	Amy-X|Amy2-2|OTTMUSG00000022462|mAmy2-1	amylase 2b	protein-coding	0.075000	0.651741	
mm_101507.1	chr11	32205590	32205790	-	1	NA	NA	NA	275	NM_030093	78372	Mm.29952	NM_030093	ENSMUSG00000040767	Snrnp25	3300001G02Rik|AL033324|C16ORF33	small nuclear ribonucleoprotein 25 (U11/U12)	protein-coding	0.055000	0.582090	
mm_45703.1	chr5	83354920	83355120	-	1	NA	NA	NA	175	NM_153801	243078	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding	0.015000	0.487562	
mm_2203.1	chr1	89580110	89580310	+	1	NA	NA	NA	103682	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.200000	0.815920	
mm_22721.1	chr3	19508524	19508724	+	1	NA	NA	NA	29	NM_025489	66326	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0.010000	0.487562	
mm_26752.1	chr3	7613678	7613878	-	1	NA	NA	NA	-18	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.030000	0.432836	
mm_81285.1	chr9	108306213	108306413	+	1	NA	NA	NA	153	NM_016802	11848	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	0.155000	0.721393	
mm_172319.1	chr7	106215274	106215474	-	1	NA	NA	NA	-34	NM_029000	74558	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0.005000	0.497512	20(CCTCATAGAGCC,+,0.00)
mm_50986.1	chr6	63255798	63255998	+	1	NA	NA	NA	-959	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.025000	0.462687	
mm_136504.1	chr16	96702691	96702891	-	1	NA	NA	NA	235185	NM_008791	18546	Mm.5023	NM_008791	ENSMUSG00000090223	Pcp4	P16Rimb19|Pcp-4|Pep19	Purkinje cell protein 4	protein-coding	0.010000	0.333333	
mm_4574.1	chr1	177740858	177741058	+	1	NA	NA	NA	11144	NM_027077	69428	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.005000	0.447761	
mm_155215.1	chrX	56787779	56787979	+	1	NA	NA	NA	1352	NM_001287800	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.000000	0.497512	-30(GCTTAAATGGAA,+,0.00)
mm_121309.1	chr14	106106094	106106294	+	1	NA	NA	NA	-4	NM_198601	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0.060000	0.671642	-1(CCTTTTATAGCG,+,0.00)
mm_88467.1	chr10	77581636	77581836	+	1	NA	NA	NA	-31	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.115000	0.681592	
mm_38971.1	chr4	150902135	150902335	-	1	NA	NA	NA	7686	NM_020569	57320	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.040000	0.522388	
mm_69648.1	chr7	139234491	139234691	-	1	NA	NA	NA	-13891	NM_001033206	101631	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.020000	0.527363	
mm_145143.1	chr18	45559711	45559911	+	1	NA	NA	NA	-343	NM_080465	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.105000	0.726368	
mm_159042.1	chr1	180944004	180944204	+	1	NA	NA	NA	1586	NM_144794	208795	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.005000	0.537313	
mm_98790.1	chr11	96929315	96929515	+	1	NA	NA	NA	91	NM_146026	217138	Mm.342551	NM_146026	ENSMUSG00000047040	Prr15l	Atad4|BC022765|E230006A12Rik	proline rich 15-like	protein-coding	0.025000	0.616915	
mm_120880.1	chr14	75315866	75316066	+	1	NA	NA	NA	31593	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0.025000	0.407960	
mm_21288.1	chr2	156970463	156970663	-	1	NA	NA	NA	21548	NM_013865	29812	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0.015000	0.502488	
mm_73528.1	chr8	108584949	108585149	+	1	NA	NA	NA	-372	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.045000	0.522388	
mm_15064.1	chr2	153014506	153014706	+	1	NA	NA	NA	777	NM_178939	68559	Mm.12746	NM_178939	ENSMUSG00000027472	Pdrg1	1110004D19Rik|AU020945|AV006589|Pdrg	p53 and DNA damage regulated 1	protein-coding	0.020000	0.447761	
mm_57152.1	chr6	122729926	122730126	-	1	NA	NA	NA	12719	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.055000	0.572139	
mm_64100.1	chr7	141009637	141009837	+	1	NA	NA	NA	1007	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.030000	0.507463	
mm_20177.1	chr2	122562253	122562453	-	1	NA	NA	NA	48924	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.005000	0.412935	
mm_125542.1	chr15	58245732	58245932	+	1	NA	NA	NA	-30940	NM_026346	67731	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.005000	0.492537	
mm_157305.1	chrX	20929763	20929963	-	1	NA	NA	NA	1692	NM_008823	18636	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	0.005000	0.432836	
mm_16369.1	chr2	177460095	177460295	+	1	NA	NA	NA	-4547	NM_001177568	628308	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420|OTTMUSG00000016588	zinc finger protein 970	protein-coding	0.040000	0.432836	-20(AACTTTAAAAAG,-,0.00)
mm_81077.1	chr9	106223593	106223793	+	1	NA	NA	NA	1095	NM_031178	81897	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	0.030000	0.582090	
mm_12337.1	chr2	69670064	69670264	+	1	NA	NA	NA	44	NM_001081087	228003	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	0.025000	0.542289	
mm_1285.1	chr1	64121758	64121958	+	1	NA	NA	NA	-469	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.095000	0.656716	-34(GGCTATATAAAG,-,0.00),-32(CTATATAAAGGG,+,0.00),-32(CTATATAAAGGG,-,0.00)
mm_29481.1	chr3	115712761	115712961	-	1	NA	NA	NA	2194	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.025000	0.482587	
mm_10506.1	chr2	16355944	16356144	+	1	NA	NA	NA	-260	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.060000	0.636816	
mm_6539.1	chr1	74951570	74951770	-	1	NA	NA	NA	2	NM_001313683	16147	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	0.115000	0.716418	
mm_117553.1	chr13	84340086	84340286	-	1	NA	NA	NA	117890	NM_175187	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	0.010000	0.452736	
mm_75262.1	chr8	40597920	40598120	-	1	NA	NA	NA	36772	NM_001040699	54384	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.020000	0.502488	-35(TCCCTTATAAGG,-,0.00),-33(CCTTATAAGGCA,+,0.00)
mm_95572.1	chr11	52396493	52396693	+	1	NA	NA	NA	165	NM_153117	213673	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.130000	0.726368	
mm_23996.1	chr3	86539796	86539996	+	1	NA	NA	NA	8387	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.005000	0.472637	
mm_60574.1	chr7	44481528	44481728	+	1	NA	NA	NA	-2889	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.492537	
mm_3361.1	chr1	138175596	138175796	+	1	NA	NA	NA	-391	NM_001268286	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.020000	0.442786	
mm_173311.1	chrY	90734833	90735033	+	1	NA	NA	NA	20117	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.502488	
mm_50370.1	chr6	48676101	48676301	+	1	NA	NA	NA	66	NM_174960	317758	Mm.116971	NM_174960	ENSMUSG00000051124	Gimap9	A630002K24|BB145400	GTPase, IMAP family member 9	protein-coding	0.005000	0.502488	
mm_21952.1	chr2	167101477	167101677	-	1	NA	NA	NA	36284	NR_028540	100217443		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.010000	0.358209	
mm_49885.1	chr6	38663187	38663387	+	1	NA	NA	NA	218	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.155000	0.820896	
mm_6090.1	chr1	63178777	63178977	-	1	NA	NA	NA	-146	NR_028558	100217464	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	0.010000	0.407960	
mm_79138.1	chr9	47643474	47643674	+	1	NA	NA	NA	113222	NM_018770	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.020000	0.393035	
mm_49088.1	chr6	6955921	6956121	+	1	NA	NA	NA	3	NM_001077713	71238	Mm.389086	NM_001077713	ENSMUSG00000042505	Sdhaf3	0610005M07Rik|4933430A16Rik|Acn9	succinate dehydrogenase complex assembly factor 3	protein-coding	0.105000	0.646766	35(GGCTTTATATAG,-,0.00),37(CTTTATATAGGC,+,0.00)
mm_22191.1	chr2	173276103	173276303	-	1	NA	NA	NA	330	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.190000	0.810945	
mm_115148.1	chr13	105082022	105082222	+	1	NA	NA	NA	0	NM_025751	66763	Mm.109093	NM_025751	ENSMUSG00000021718	4933425L06Rik	-	RIKEN cDNA 4933425L06 gene	protein-coding	0.040000	0.611940	
mm_144836.1	chr18	36529132	36529332	+	1	NA	NA	NA	1080	NM_001271544	240215	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	0.015000	0.601990	
mm_116069.1	chr13	27640670	27640870	-	1	NA	NA	NA	1723	NM_001164058	19113	Mm.196424	NM_008930	ENSMUSG00000006488	Prl7a1	AA407021|AA409971|AA410116|PLP-E|PLP-G|Prlpe|Prlpg	prolactin family 7, subfamily a, member 1	protein-coding	0.000000	0.427861	-15(CCTTTTATGGGA,+,0.00)
mm_18536.1	chr2	64097909	64098109	-	1	NA	NA	NA	29	NM_001267846	60344	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.030000	0.497512	
mm_145450.1	chr18	60213056	60213256	+	1	NA	NA	NA	1079	NM_001033767	240327	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.010000	0.447761	85(GCTTTAAAACCC,+,0.00)
mm_111053.1	chr12	80109834	80110034	-	1	NA	NA	NA	3079	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.055000	0.641791	
mm_63799.1	chr7	132931137	132931337	+	1	NA	NA	NA	-18385	NM_207302	360216	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0.115000	0.716418	
mm_114515.1	chr13	72702749	72702949	+	1	NA	NA	NA	74052	NM_010574	16372	Mm.28888	NM_010574	ENSMUSG00000001504	Irx2	-	Iroquois related homeobox 2 (Drosophila)	protein-coding	0.010000	0.557214	
mm_61654.1	chr7	80472357	80472557	+	1	NA	NA	NA	62541	NM_007550	12144	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ helicase-like	protein-coding	0.005000	0.432836	
mm_24523.1	chr3	92992117	92992317	+	1	NA	NA	NA	-9	NM_001018079	69520	Mm.439968	NM_001018079	ENSMUSG00000068885	Lce3f	2310002A05Rik	late cornified envelope 3F	protein-coding	0.000000	0.507463	
mm_39284.1	chr5	3957645	3957845	+	1	NA	NA	NA	29559	NM_194462	100986	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	0.025000	0.432836	
mm_103679.1	chr11	79250882	79251082	-	1	NA	NA	NA	3713	NM_019653	78889	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.025000	0.373134	
mm_135595.1	chr16	50723290	50723490	-	1	NA	NA	NA	-3742	NR_105782	102466634		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA	0.015000	0.482587	
mm_52394.1	chr6	113301525	113301725	+	1	NA	NA	NA	-5512	NM_030178	78783	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.015000	0.552239	
mm_80145.1	chr9	70852460	70852660	+	1	NA	NA	NA	82248	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.030000	0.492537	
mm_60159.1	chr7	39552393	39552593	+	1	NA	NA	NA	34727	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.070000	0.606965	
mm_79767.1	chr9	62825476	62825676	+	1	NA	NA	NA	-13211	NM_001033175	76524	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.010000	0.512438	-36(CACTATAAAAGG,-,0.00)
mm_132593.1	chr16	38452798	38452998	+	1	NA	NA	NA	-209	NM_007414	11544	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.085000	0.676617	
mm_18159.1	chr2	45096690	45096890	-	1	NA	NA	NA	13487	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.025000	0.492537	
mm_83558.1	chr9	46242768	46242968	-	1	NA	NA	NA	2024	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.045000	0.592040	
mm_12308.1	chr2	69113493	69113693	+	1	NA	NA	NA	-22207	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.010000	0.432836	
mm_145973.1	chr18	67933907	67934107	+	1	NA	NA	NA	750	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.075000	0.641791	
mm_3737.1	chr1	155145753	155145953	+	1	NA	NA	NA	927	NM_008209	15064	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	0.010000	0.502488	-35(ACCTTTAAAAGC,-,0.00),-34(CCTTTAAAAGCA,+,0.00)
mm_113825.1	chr13	47000018	47000218	+	1	NA	NA	NA	14732	NM_175340	105193	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	0.015000	0.492537	
mm_87956.1	chr10	63243666	63243866	+	1	NA	NA	NA	-31	NM_030114	67345	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0.080000	0.716418	
mm_85104.1	chr9	94702265	94702465	-	1	NA	NA	NA	32473	NM_177909	331004	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.010000	0.487562	
mm_30800.1	chr4	20008367	20008567	+	1	NA	NA	NA	138	NM_015767	50500	Mm.24375	NM_015767	ENSMUSG00000073988	Ttpa	alpha-TTP	tocopherol (alpha) transfer protein	protein-coding	0.100000	0.741294	
mm_102125.1	chr11	53351900	53352100	-	1	NA	NA	NA	1233	NM_033565	93736	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.030000	0.472637	
mm_16654.1	chr2	6545972	6546172	-	1	NA	NA	NA	175590	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.015000	0.378109	
mm_96907.1	chr11	70458884	70459084	+	1	NA	NA	NA	-638	NM_001029929	574428	Mm.472771	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.020000	0.477612	
mm_52113.1	chr6	97904609	97904809	+	1	NA	NA	NA	-25108	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.432836	
mm_150316.1	chr19	34573506	34573706	+	1	NA	NA	NA	-9923	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.020000	0.482587	
mm_119224.1	chr14	33250294	33250494	+	1	NA	NA	NA	33571	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.050000	0.606965	84(GCTTTAATGGTC,+,0.00)
mm_101113.1	chr11	11956967	11957167	-	1	NA	NA	NA	-58923	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.015000	0.353234	
mm_38320.1	chr4	137329008	137329208	-	1	NA	NA	NA	28651	NM_009861	12540	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.020000	0.417910	
mm_9130.1	chr1	170761740	170761940	-	1	NA	NA	NA	105931	NM_001081304	226641	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.000000	0.368159	
mm_61631.1	chr7	80246352	80246552	+	1	NA	NA	NA	76	NM_177765	269954	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	0.120000	0.676617	
mm_70163.1	chr7	143592370	143592570	-	1	NA	NA	NA	7620	NM_001252593	27267	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	0.035000	0.601990	
mm_39362.1	chr5	9118487	9118687	+	1	NA	NA	NA	17850	NM_001081029	652925	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.015000	0.358209	
mm_117759.1	chr13	96081270	96081470	-	1	NA	NA	NA	51207	NM_029210	75209	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	0.010000	0.388060	
mm_169597.1	chr1	53328775	53328975	-	1	NA	NA	NA	15251	NR_104360	72085	Mm.482256	NM_028091	ENSMUSG00000026096	Osgepl1	2610001M19Rik|AA416452	O-sialoglycoprotein endopeptidase-like 1	protein-coding	0.005000	0.393035	
mm_21801.1	chr2	164911179	164911379	-	1	NA	NA	NA	471	NM_199027	329559	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0.095000	0.726368	
mm_135397.1	chr16	44558688	44558888	-	1	NA	NA	NA	82	NM_172506	117606	Mm.41561	NM_172506	ENSMUSG00000022687	Boc	4732455C11|mFLJ00376	biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein	protein-coding	0.065000	0.626866	
mm_169838.1	chr16	26866642	26866842	-	1	NA	NA	NA	101503	NM_001285916	239789	Mm.326909	NM_001013761	ENSMUSG00000068428	Gmnc	Gemc1|Gm1778|Gm606	geminin coiled-coil domain containing	protein-coding	0.045000	0.636816	
mm_8579.1	chr1	155812798	155812998	-	1	NA	NA	NA	1	NM_023268	104009	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx	quiescin Q6 sulfhydryl oxidase 1	protein-coding	0.090000	0.691542	
mm_28659.1	chr3	95241038	95241238	-	1	NA	NA	NA	-29	NM_001024841	229588	Mm.387177	NM_001024841	ENSMUSG00000068860	Gm128	Ment|pmis1	predicted gene 128	protein-coding	0.045000	0.597015	
mm_100632.1	chr11	121717014	121717214	+	1	NA	NA	NA	14687	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.015000	0.447761	
mm_62252.1	chr7	99268263	99268463	+	1	NA	NA	NA	17	NM_001043355	17760	Mm.154087	NM_010837	ENSMUSG00000055407	Map6	2810411E12Rik|Map-6|Mtap6|STOP	microtubule-associated protein 6	protein-coding	0.145000	0.756219	
mm_48127.1	chr5	137149725	137149925	-	1	NA	NA	NA	-33618	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.497512	
mm_153533.1	chr19	41896084	41896284	-	1	NA	NA	NA	-31	NM_199447	107094	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	0.060000	0.547264	
mm_11628.1	chr2	34775456	34775656	+	1	NA	NA	NA	3466	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.010000	0.442786	
mm_102015.1	chr11	51615647	51615847	-	1	NA	NA	NA	-4026	NM_026631	52530	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0.045000	0.611940	
mm_44664.1	chr5	29195711	29195911	-	1	NA	NA	NA	-182	NM_001289757	56874	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	0.140000	0.681592	
mm_34675.1	chr4	150932288	150932488	+	1	NA	NA	NA	4389	NM_001077509	21942	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.025000	0.542289	
mm_1329.1	chr1	65186633	65186833	+	1	NA	NA	NA	48	NM_001310624	18711	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE finger containing	protein-coding	0.120000	0.726368	
mm_126430.1	chr15	80572613	80572813	+	1	NA	NA	NA	116	NM_001289442	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.060000	0.502488	
mm_105058.1	chr11	100712353	100712553	-	1	NA	NA	NA	14	NM_001038010	14534	Mm.218837	NM_020004	ENSMUSG00000020918	Kat2a	1110051E14Rik|AW212720|Gcn5|Gcn5l2|mmGCN5	K(lysine) acetyltransferase 2A	protein-coding	0.110000	0.711443	
mm_105091.1	chr11	100889465	100889665	-	1	NA	NA	NA	29081	NM_001164062	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.025000	0.522388	
mm_17114.1	chr2	24434004	24434204	-	1	NA	NA	NA	41495	NM_011040	18510	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0.015000	0.437811	
mm_16188.1	chr2	172977606	172977806	+	1	NA	NA	NA	-2136	NM_012046	26972	Mm.23495	NM_012046	ENSMUSG00000005883	Spo11	AI449549|Spo11a|Spo11b	SPO11 meiotic protein covalently bound to DSB	protein-coding	0.020000	0.577114	
mm_155202.1	chrX	56731357	56731557	+	1	NA	NA	NA	-304	NM_010211	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.145000	0.800995	
mm_112934.1	chr13	20977947	20978147	+	1	NA	NA	NA	95252	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.000000	0.378109	
mm_16629.1	chr2	5697916	5698116	-	1	NA	NA	NA	16746	NM_001290374	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.000000	0.383085	
mm_162046.1	chr19	61069228	61069428	+	1	NA	NA	NA	71512	NR_131956	414758	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0.010000	0.457711	
mm_47104.1	chr5	118421903	118422103	-	1	NA	NA	NA	-138716	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.025000	0.631841	
mm_39634.1	chr5	24471768	24471968	+	1	NA	NA	NA	19691	NM_139153	213990	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.010000	0.442786	
mm_124660.1	chr15	5554652	5554852	+	1	NA	NA	NA	58434	NR_045274	71432	Mm.291087	NR_045274		5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.020000	0.407960	
mm_50882.1	chr6	55836789	55836989	+	1	NA	NA	NA	-129	NM_001081665	232016	Mm.333084	NM_001081665	ENSMUSG00000037973	Ccdc129	D530004J12Rik|Gm458	coiled-coil domain containing 129	protein-coding	0.010000	0.497512	
mm_120391.1	chr14	64590385	64590585	+	1	NA	NA	NA	-172	NR_029813	387233		NR_029813	ENSMUSG00000065597	Mir124a-1	Mirn124a|Mirn124a-1	microRNA 124a-1	ncRNA	0.040000	0.527363	
mm_152065.1	chr19	6532256	6532456	-	1	NA	NA	NA	10714	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.050000	0.527363	-86(CCCCTTAAAAAA,-,0.00)
mm_165361.1	chr2	123487517	123487717	-	1	NA	NA	NA	-602352	NM_001290997	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.000000	0.373134	
mm_134173.1	chr16	10835252	10835452	-	1	NA	NA	NA	293	NM_001162932	223970	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.125000	0.771144	
mm_172377.1	chr7	128013135	128013335	-	1	NA	NA	NA	8857	NM_001079932	434246	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	0.050000	0.492537	
mm_111749.1	chr12	103949061	103949261	-	1	NA	NA	NA	7736	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	0.045000	0.572139	
mm_5608.1	chr1	39615589	39615789	-	1	NA	NA	NA	35493	NM_170597	263764	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0.020000	0.412935	
mm_82828.1	chr9	31149586	31149786	-	1	NA	NA	NA	-17887	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.010000	0.417910	
mm_143313.1	chr17	66101454	66101654	-	1	NA	NA	NA	5	NM_001278415	72900	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	0.175000	0.761194	
mm_29847.1	chr3	129901384	129901584	-	1	NA	NA	NA	69	NM_009811	12368	Mm.281379	NM_009811	ENSMUSG00000027997	Casp6	CASP-6|Mch2	caspase 6	protein-coding	0.080000	0.716418	
mm_76413.1	chr8	84937257	84937457	-	1	NA	NA	NA	-4	NM_019945	56527	Mm.154614	NM_019945	ENSMUSG00000053693	Mast1	9430008B02Rik|SAST|SAST170	microtubule associated serine/threonine kinase 1	protein-coding	0.095000	0.746269	
mm_43832.1	chr5	142972245	142972445	+	1	NA	NA	NA	11990	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.005000	0.567164	
mm_90181.1	chr10	119992801	119993001	+	1	NA	NA	NA	-21	NM_001277295	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding	0.000000	0.497512	
mm_73726.1	chr8	112698352	112698552	+	1	NA	NA	NA	128409	NM_130457	170571	Mm.209232	NM_130457	ENSMUSG00000031772	Cntnap4	Caspr4|E130114F09Rik	contactin associated protein-like 4	protein-coding	0.015000	0.477612	
mm_90611.1	chr10	128361217	128361417	+	1	NA	NA	NA	8720	NM_001081040	210582	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.005000	0.447761	
mm_101264.1	chr11	21206942	21207142	-	1	NA	NA	NA	-31990	NM_139061	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.005000	0.432836	
mm_124350.1	chr14	104464559	104464759	-	1	NA	NA	NA	3340	NM_011143	18996	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.015000	0.422886	
mm_119484.1	chr14	47367682	47367882	+	1	NA	NA	NA	-6078	NM_010705	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.030000	0.547264	
mm_18111.1	chr2	44994373	44994573	-	1	NA	NA	NA	28704	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.025000	0.417910	
mm_121053.1	chr14	85478891	85479091	+	1	NA	NA	NA	-766979	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	0.020000	0.427861	
mm_67779.1	chr7	97331956	97332156	-	1	NA	NA	NA	-267	NM_001039039	622320	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	0.070000	0.661692	-88(TGGCCTTAAAGG,-,0.00),-87(GGCCTTAAAGGG,-,0.00),-86(GCCTTAAAGGGG,+,0.00),-85(CCTTAAAGGGGA,+,0.00)
mm_112341.1	chr12	116405029	116405229	-	1	NA	NA	NA	32	NR_028421	319545	Mm.390543	NR_028421		D430020J02Rik	-	RIKEN cDNA D430020J02 gene	ncRNA	0.055000	0.582090	
mm_41307.1	chr5	90468482	90468682	+	1	NA	NA	NA	7712	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.502488	
mm_12068.1	chr2	59622902	59623102	+	1	NA	NA	NA	10960	NM_198294	66860	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.010000	0.383085	
mm_83338.1	chr9	44268106	44268306	-	1	NA	NA	NA	-19	NM_001163743	270151	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	0.070000	0.711443	
mm_123549.1	chr14	66831554	66831754	-	1	NA	NA	NA	36946	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.005000	0.442786	
mm_158746.1	chrX	164381479	164381679	-	1	NA	NA	NA	8057	NM_010216	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.020000	0.427861	
mm_112538.1	chr13	9684460	9684660	+	1	NA	NA	NA	79250	NM_001347471	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.005000	0.407960	
mm_101585.1	chr11	34543894	34544094	-	1	NA	NA	NA	229172	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.015000	0.343284	
mm_166226.1	chr5	65247226	65247426	+	1	NA	NA	NA	47630	NM_153391	213081	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	0.005000	0.542289	
mm_160840.1	chr11	49204010	49204210	+	1	NA	NA	NA	610	NM_009562	22720	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0.040000	0.577114	
mm_8221.1	chr1	138165094	138165294	-	1	NA	NA	NA	9932	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.407960	-82(CCTTTAATACCA,+,0.00),18(CTGTTTAAAAAG,-,0.00)
mm_48605.1	chr5	144255585	144255785	-	1	NA	NA	NA	460	NM_018772	55950	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.085000	0.746269	
mm_107157.1	chr12	24572346	24572546	+	1	NA	NA	NA	159	NM_001161406	195733	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead-like 1 (Drosophila)	protein-coding	0.150000	0.756219	
mm_14470.1	chr2	131392995	131393195	+	1	NA	NA	NA	-40203	NM_178607	51902	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	0.005000	0.517413	
mm_107546.1	chr12	40718277	40718477	+	1	NA	NA	NA	272324	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.000000	0.388060	
mm_138051.1	chr17	33926219	33926419	+	1	NA	NA	NA	-3575	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.045000	0.611940	
mm_113663.1	chr13	42681906	42682106	+	1	NA	NA	NA	1207	NM_001302635	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.030000	0.497512	
mm_65020.1	chr7	17973551	17973751	-	1	NA	NA	NA	1484	NM_023289	66996	Mm.36666	NM_023289	ENSMUSG00000030368	Ceacam11	1600015D01Rik	carcinoembryonic antigen-related cell adhesion molecule 11	protein-coding	0.005000	0.393035	
mm_25959.1	chr3	132629761	132629961	+	1	NA	NA	NA	-330	NM_001270430	433653		NM_001270430	ENSMUSG00000091721	Gimd1	EG433653|Gm5549	GIMAP family P-loop NTPase domain containing 1	protein-coding	0.010000	0.373134	
mm_103599.1	chr11	78386601	78386801	-	1	NA	NA	NA	-93	NM_001277290	15218	Mm.4496	NM_008238	ENSMUSG00000002057	Foxn1	D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude	forkhead box N1	protein-coding	0.030000	0.606965	
mm_138995.1	chr17	45555637	45555837	+	1	NA	NA	NA	37	NM_001304956	18037	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	0.085000	0.681592	
mm_173147.1	chrX	23534708	23534908	+	1	NA	NA	NA	-158243	NM_175180	72404	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	0.025000	0.432836	
mm_146929.1	chr18	31949777	31949977	-	1	NA	NA	NA	-241	NM_001025381	574402	Mm.391108	NM_001025381	ENSMUSG00000052229	Gpr17	AI853548	G protein-coupled receptor 17	protein-coding	0.015000	0.587065	
mm_76598.1	chr8	89824568	89824768	-	1	NA	NA	NA	523584	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding	0.005000	0.477612	66(GCCTATATAAGC,-,0.00)
mm_53759.1	chr6	145746496	145746696	+	1	NA	NA	NA	-61787	NM_027760	71323	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.110000	0.805970	
mm_54527.1	chr6	36388817	36389017	-	1	NA	NA	NA	-683	NR_015589	319472	Mm.226434	NR_015589	ENSMUSG00000073154	9330158H04Rik	-	RIKEN cDNA 9330158H04 gene	ncRNA	0.030000	0.567164	
mm_24411.1	chr3	90476071	90476271	+	1	NA	NA	NA	-30	NM_026374	67781	Mm.227258	NM_026374	ENSMUSG00000001016	Ilf2	6230405A16Rik|TEG-267|Tex261|Tex267	interleukin enhancer binding factor 2	protein-coding	0.075000	0.552239	
mm_81739.1	chr9	113792949	113793149	+	1	NA	NA	NA	-281	NM_001286603	76499	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.010000	0.383085	-94(TTTTTTAAAAGG,-,0.00),24(GCATTAAAAGTC,+,0.00)
mm_75858.1	chr8	70700115	70700315	-	1	NA	NA	NA	2476	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.105000	0.711443	-79(CCCCTTAGAGCC,+,0.00)
mm_11675.1	chr2	35340252	35340452	+	1	NA	NA	NA	-3343	NM_013515	13830	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.030000	0.532338	
mm_26248.1	chr3	141591966	141592166	+	1	NA	NA	NA	126502	NM_001293561	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.005000	0.338308	
mm_24266.1	chr3	89187886	89188086	+	1	NA	NA	NA	4761	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.020000	0.522388	
mm_152953.1	chr19	29047979	29048179	-	1	NA	NA	NA	-177	NM_021299	56248	Mm.196067	NM_021299	ENSMUSG00000024782	Ak3	AA407498|AI506714|AK-3|Ak3l|Ak3l1|Akl3l	adenylate kinase 3	protein-coding	0.065000	0.701493	
mm_99777.1	chr11	107201878	107202078	+	1	NA	NA	NA	-12597	NM_001161329	68979	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.025000	0.512438	
mm_64038.1	chr7	140772946	140773146	+	1	NA	NA	NA	9214	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.025000	0.457711	
mm_18742.1	chr2	73038293	73038493	-	1	NA	NA	NA	-57947	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.040000	0.701493	
mm_104860.1	chr11	99385233	99385433	-	1	NA	NA	NA	4031	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.000000	0.268657	-80(AGGTCTAAAAGG,-,0.00)
mm_73051.1	chr8	94365754	94365954	+	1	NA	NA	NA	-20646	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.015000	0.592040	
mm_66360.1	chr7	43530221	43530421	-	1	NA	NA	NA	2850	NM_001111058	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.015000	0.507463	-97(GTTTTTAAACTC,+,0.00)
mm_12461.1	chr2	71347865	71348065	+	1	NA	NA	NA	19589	NM_172436	78830	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.030000	0.517413	
mm_16562.1	chr2	3332354	3332554	-	1	NA	NA	NA	174	NM_001013376	227522	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0.100000	0.691542	
mm_11779.1	chr2	39005154	39005354	+	1	NA	NA	NA	-123	NM_025592	66489	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0.100000	0.686567	
mm_77683.1	chr8	125734019	125734219	-	1	NA	NA	NA	-84	NM_025636	66566	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.075000	0.626866	
mm_172417.1	chr7	25263983	25264183	-	1	NA	NA	NA	-3616	NM_001302811	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.025000	0.482587	53(AACTTTAAAAAG,-,0.00)
mm_95492.1	chr11	51619672	51619872	+	1	NA	NA	NA	-1	NM_026631	52530	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0.070000	0.547264	
mm_74461.1	chr8	4215908	4216108	-	1	NA	NA	NA	1304	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.010000	0.532338	
mm_42699.1	chr5	119881831	119882031	+	1	NA	NA	NA	47268	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.005000	0.447761	
mm_129896.1	chr15	83595037	83595237	-	1	NA	NA	NA	20	NM_183017	223723	Mm.46778	NM_183017	ENSMUSG00000016757	Ttll12	BC055368|D430005B17	tubulin tyrosine ligase-like family, member 12	protein-coding	0.140000	0.696517	
mm_7634.1	chr1	127732854	127733054	-	1	NA	NA	NA	3541	NM_001033041	266645	Mm.25735	NM_001033041	ENSMUSG00000026348	Acmsd	-	amino carboxymuconate semialdehyde decarboxylase	protein-coding	0.010000	0.447761	
mm_143326.1	chr17	66413141	66413341	-	1	NA	NA	NA	36509	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.030000	0.432836	
mm_149256.1	chr19	10426051	10426251	+	1	NA	NA	NA	31296	NM_001111140	278795	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0.040000	0.651741	
mm_171608.1	chr4	149457199	149457399	+	1	NA	NA	NA	-2331	NM_022020	63954	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	0.065000	0.562189	
mm_98518.1	chr11	94952595	94952795	+	1	NA	NA	NA	-14898	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.005000	0.328358	
mm_31185.1	chr4	43555533	43555733	+	1	NA	NA	NA	6950	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.030000	0.487562	
mm_126397.1	chr15	80219490	80219690	+	1	NA	NA	NA	-14490	NM_178719	239555	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.015000	0.552239	
mm_56514.1	chr6	99428929	99429129	-	1	NA	NA	NA	6316	NM_053202	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.030000	0.542289	
mm_54555.1	chr6	37207568	37207768	-	1	NA	NA	NA	92308	NM_001081206	320127	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.000000	0.432836	-65(CCTTTTAGGGGA,+,0.00)
mm_3840.1	chr1	160044421	160044621	+	1	NA	NA	NA	141	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.045000	0.611940	
mm_73609.1	chr8	110079666	110079866	+	1	NA	NA	NA	32	NM_175480	234725	Mm.87487	NM_175480	ENSMUSG00000044676	Zfp612	B230354B21Rik	zinc finger protein 612	protein-coding	0.115000	0.716418	
mm_92419.1	chr10	76961806	76962006	-	1	NA	NA	NA	41	NM_001347216	59093	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding	0.145000	0.751244	
mm_18333.1	chr2	57297494	57297694	-	1	NA	NA	NA	59212	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.015000	0.417910	
mm_10813.1	chr2	24350223	24350423	+	1	NA	NA	NA	4952	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.005000	0.373134	
mm_168230.1	chr10	80107096	80107296	+	1	NA	NA	NA	-4494	NM_183426	216161	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch homolog 2 (Drosophila)	protein-coding	0.000000	0.527363	
mm_62352.1	chr7	100498746	100498946	+	1	NA	NA	NA	5488	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.045000	0.597015	
mm_55542.1	chr6	70792077	70792277	-	1	NA	NA	NA	-2	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.115000	0.716418	
mm_89856.1	chr10	107495180	107495380	+	1	NA	NA	NA	-551	NM_008657	17878	Mm.11	NM_008657	ENSMUSG00000035923	Myf6	MRF4|bHLHc4|herculin	myogenic factor 6	protein-coding	0.005000	0.402985	
mm_60538.1	chr7	44480336	44480536	+	1	NA	NA	NA	-4081	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.492537	
mm_141737.1	chr17	34121858	34122058	-	1	NA	NA	NA	-211	NM_010238	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.035000	0.651741	
mm_108510.1	chr12	83987776	83987976	+	1	NA	NA	NA	15	NM_134188	171210	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	0.040000	0.567164	
mm_165589.1	chr3	32906651	32906851	+	1	NA	NA	NA	78328	NM_001163517	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.010000	0.432836	
mm_60451.1	chr7	44477350	44477550	+	1	NA	NA	NA	-7067	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.427861	
mm_27238.1	chr3	36521304	36521504	-	1	NA	NA	NA	41	NR_040411	100503068	Mm.389423	NR_040411	ENSMUSG00000085007	Gm11549	OTTMUSG00000002111	predicted gene 11549	ncRNA	0.095000	0.661692	
mm_4849.1	chr1	187215424	187215624	+	1	NA	NA	NA	13	NM_026367	67769	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding	0.085000	0.616915	
mm_32153.1	chr4	99929439	99929639	+	1	NA	NA	NA	88	NM_028132	72157	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.080000	0.656716	
mm_121194.1	chr14	103051196	103051396	+	1	NA	NA	NA	4284	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.005000	0.457711	-26(GCACATTTAAGG,-,0.00)
mm_107545.1	chr12	40711945	40712145	+	1	NA	NA	NA	265992	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.000000	0.542289	
mm_77374.1	chr8	119833425	119833625	-	1	NA	NA	NA	7054	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.000000	0.467662	
mm_61128.1	chr7	55849269	55849469	+	1	NA	NA	NA	7298	NM_001164661	20430	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.005000	0.383085	
mm_17508.1	chr2	29099564	29099764	-	1	NA	NA	NA	-25328	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.015000	0.512438	
mm_61574.1	chr7	79811108	79811308	+	1	NA	NA	NA	481	NM_008589	17293	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0.155000	0.731343	
mm_104523.1	chr11	96072931	96073131	-	1	NA	NA	NA	2600	NM_001161419	11951	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	0.035000	0.547264	
mm_112882.1	chr13	20857679	20857879	+	1	NA	NA	NA	63666	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.358209	
mm_4151.1	chr1	171018860	171019060	+	1	NA	NA	NA	34	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.005000	0.467662	-34(GGCCCTTAAGGG,-,0.00)
mm_53892.1	chr6	3377086	3377286	-	1	NA	NA	NA	22385	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.000000	0.363184	
mm_24922.1	chr3	96520358	96520558	+	1	NA	NA	NA	-4727	NM_027126	69585	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0.010000	0.552239	-35(CACTATAAAAGG,-,0.00)
mm_66087.1	chr7	30971823	30972023	-	1	NA	NA	NA	1546	NM_001164185	54135	Mm.4067	NM_017405	ENSMUSG00000001247	Lsr	ILDR3|Lisch7	lipolysis stimulated lipoprotein receptor	protein-coding	0.030000	0.621891	
mm_111751.1	chr12	103950983	103951183	-	1	NA	NA	NA	5814	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	0.010000	0.542289	
mm_23238.1	chr3	51210226	51210426	+	1	NA	NA	NA	-14121	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.000000	0.517413	
mm_89538.1	chr10	94550824	94551024	+	1	NA	NA	NA	-24333	NM_001168684	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.045000	0.572139	
mm_13656.1	chr2	114055072	114055272	+	1	NA	NA	NA	776	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.025000	0.477612	
mm_134321.1	chr16	16073327	16073527	-	1	NA	NA	NA	73424	NM_146068	224008	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0.010000	0.388060	
mm_93446.1	chr10	109903819	109904019	-	1	NA	NA	NA	96300	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.030000	0.507463	
mm_80187.1	chr9	72389844	72390044	+	1	NA	NA	NA	-48585	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.015000	0.313433	
mm_59019.1	chr7	19271591	19271791	+	1	NA	NA	NA	163	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.090000	0.706468	
mm_146835.1	chr18	22828445	22828645	-	1	NA	NA	NA	210118	NM_001161483	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding	0.005000	0.432836	
mm_111905.1	chr12	108765753	108765953	-	1	NA	NA	NA	-27458	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.030000	0.557214	
mm_38203.1	chr4	135573533	135573733	-	1	NA	NA	NA	-13	NM_001013756	230824	Mm.331972	NM_001013756	ENSMUSG00000037188	Grhl3	AI561912|Get1|Som|Tfcp2l4|ct	grainyhead-like 3 (Drosophila)	protein-coding	0.055000	0.601990	
mm_161146.1	chr13	22327834	22328034	+	1	NA	NA	NA	23	NM_134244	171278	Mm.378582	NM_134244	ENSMUSG00000069294	Vmn1r197	V1rh21	vomeronasal 1 receptor 197	protein-coding	0.005000	0.417910	
mm_163524.1	chr12	116047732	116047932	+	1	NA	NA	NA	108	NM_019565	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0.085000	0.592040	
mm_110927.1	chr12	76369492	76369692	-	1	NA	NA	NA	-32	NM_028356	109929	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0.180000	0.805970	
mm_79295.1	chr9	51315796	51315996	+	1	NA	NA	NA	13021	NM_027217	69809	Mm.75315	NM_027217	ENSMUSG00000036027	1810046K07Rik	-	RIKEN cDNA 1810046K07 gene	protein-coding	0.005000	0.502488	
mm_112316.1	chr12	114946326	114946526	-	1	NA	NA	NA	-432732	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.427861	
mm_98332.1	chr11	90639502	90639702	+	1	NA	NA	NA	1418	NM_199008	69802	Mm.151940	NM_199008	ENSMUSG00000020544	Cox11	2010004I09Rik	cytochrome c oxidase assembly protein 11	protein-coding	0.010000	0.318408	
mm_1520.1	chr1	72824436	72824636	+	1	NA	NA	NA	56	NM_008342	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.085000	0.676617	-78(GGCTTTTTAGGA,-,0.00)
mm_101855.1	chr11	48868520	48868720	-	1	NA	NA	NA	2726	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding	0.020000	0.512438	
mm_11393.1	chr2	31454417	31454617	+	1	NA	NA	NA	-15753	NM_007494	11898	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.020000	0.621891	
mm_46734.1	chr5	110808341	110808541	-	1	NA	NA	NA	1640	NM_009469	22241	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	0.035000	0.616915	
mm_62346.1	chr7	100498268	100498468	+	1	NA	NA	NA	5010	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.010000	0.517413	
mm_169000.1	chr13	100786401	100786601	-	1	NA	NA	NA	-15	NM_172301	268697	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	0.080000	0.601990	
mm_7244.1	chr1	93635547	93635747	-	1	NA	NA	NA	80	NM_021537	59041	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.120000	0.716418	
mm_166264.1	chr5	87963235	87963435	+	1	NA	NA	NA	16016	NR_045924	73471	Mm.396240	NR_045924	ENSMUSG00000099605	1700066N21Rik	-	RIKEN cDNA 1700066N21 gene	ncRNA	0.005000	0.373134	82(ACCTTGAAAAGG,-,0.00)
mm_153331.1	chr19	38124709	38124909	-	1	NA	NA	NA	2	NM_011255	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.170000	0.776119	-33(AGCTATAAAGGA,-,0.00)
mm_91562.1	chr10	40025086	40025286	-	1	NA	NA	NA	82	NM_144821	215929	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.055000	0.641791	
mm_133554.1	chr16	91385920	91386120	+	1	NA	NA	NA	13237	NM_001110498	15976	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.025000	0.442786	
mm_9535.1	chr1	173872801	173873001	-	1	NA	NA	NA	7286	NM_001170853	100040462	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	0.005000	0.432836	-29(CGATATAAAAAC,-,0.00)
mm_108947.1	chr12	102283119	102283319	+	1	NA	NA	NA	145	NM_177620	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.160000	0.781095	
mm_63756.1	chr7	131106879	131107079	+	1	NA	NA	NA	39304	NM_173409	233918	Mm.78341	NM_173409	ENSMUSG00000013668	4933402N03Rik	4930412O05	RIKEN cDNA 4933402N03 gene	protein-coding	0.005000	0.358209	
mm_160671.1	chr10	4429096	4429296	-	1	NA	NA	NA	-30	NR_002891	433224	Mm.153111	NR_002891		Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	0.020000	0.467662	
mm_100920.1	chr11	6367036	6367236	-	1	NA	NA	NA	-27989	NM_001005867	52915	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.005000	0.517413	
mm_100262.1	chr11	117332300	117332500	+	1	NA	NA	NA	87	NM_001113488	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.055000	0.661692	
mm_167919.1	chrX	101847348	101847548	-	1	NA	NA	NA	-1937	NM_001163610	100042480	Mm.232	NM_001163610	ENSMUSG00000079481	Nhsl2	1110062M06Rik|6430511F03|AI225852|AW488865|EG621083|ENSMUSG00000073037|Gm10456	NHS-like 2	protein-coding	0.010000	0.592040	
mm_29287.1	chr3	107741381	107741581	-	1	NA	NA	NA	18988	NM_001113530	12977	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0.000000	0.427861	
mm_161622.1	chr16	58929255	58929455	-	1	NA	NA	NA	-711	NM_146999	259001	Mm.223388	NM_146999	ENSMUSG00000090951	Olfr181	MOR184-4	olfactory receptor 181	protein-coding	0.015000	0.383085	
mm_153163.1	chr19	34493059	34493259	-	1	NA	NA	NA	-18024	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.010000	0.457711	
mm_101414.1	chr11	29172642	29172842	-	1	NA	NA	NA	-165	NM_134034	104570	Mm.276386	NM_134034	ENSMUSG00000020463	Smek2	AW011752|AW557776|Ppp4r3b|mKIAA1387	SMEK homolog 2, suppressor of mek1 (Dictyostelium)	protein-coding	0.080000	0.601990	
mm_134396.1	chr16	17530639	17530839	-	1	NA	NA	NA	313	NM_026909	69009	Mm.10174	NM_026909	ENSMUSG00000022760	Thap7	1810004B07Rik	THAP domain containing 7	protein-coding	0.125000	0.671642	
mm_74081.1	chr8	122523501	122523701	+	1	NA	NA	NA	27728	NM_001037298	234839	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	0.005000	0.572139	
mm_41762.1	chr5	103375347	103375547	+	1	NA	NA	NA	-49745	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.015000	0.542289	-35(GACTATATAAAA,-,0.00)
mm_123338.1	chr14	63133363	63133563	-	1	NA	NA	NA	11001	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.025000	0.517413	
mm_107378.1	chr12	32954186	32954386	+	1	NA	NA	NA	100	NM_198710	19027	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	0.110000	0.681592	
mm_117119.1	chr13	60848763	60848963	-	1	NA	NA	NA	15553	NM_178098	214639	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	0.000000	0.402985	
mm_17461.1	chr2	28557709	28557909	-	1	NA	NA	NA	5594	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.010000	0.587065	
mm_3694.1	chr1	153752721	153752921	+	1	NA	NA	NA	3395	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.025000	0.462687	
mm_65631.1	chr7	27552942	27553142	-	1	NA	NA	NA	176	NM_011116	18807	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.085000	0.641791	
mm_11826.1	chr2	44956525	44956725	+	1	NA	NA	NA	66552	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.005000	0.383085	66(CGGTTTAAATAG,-,0.00)
mm_96668.1	chr11	69409705	69409905	+	1	NA	NA	NA	3870	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.040000	0.542289	
mm_126435.1	chr15	80611660	80611860	+	1	NA	NA	NA	-11723	NM_010815	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.015000	0.462687	
mm_49457.1	chr6	29398826	29399026	+	1	NA	NA	NA	0	NM_145574	232664	Mm.251303	NM_145574	ENSMUSG00000029769	Ccdc136	4921511K06Rik|BC006583	coiled-coil domain containing 136	protein-coding	0.010000	0.487562	
mm_104146.1	chr11	87045821	87046021	-	1	NA	NA	NA	28216	NM_025638	66569	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	0.015000	0.412935	20(CCGTTTAAAAAC,-,0.00)
mm_145589.1	chr18	60985822	60986022	+	1	NA	NA	NA	22368	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.005000	0.507463	
mm_163078.1	chr11	68864662	68864862	+	1	NA	NA	NA	-11631	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.010000	0.467662	-53(GACTATAAATAG,-,0.00)
mm_53907.1	chr6	3966308	3966508	-	1	NA	NA	NA	1967	NM_009364	21789	Mm.25612	NM_009364	ENSMUSG00000029664	Tfpi2	AV000670|PP5/TFPI-2	tissue factor pathway inhibitor 2	protein-coding	0.000000	0.318408	
mm_106135.1	chr11	116479639	116479839	-	1	NA	NA	NA	10607	NM_026364	67763	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	0.035000	0.527363	
mm_74864.1	chr8	24948700	24948900	-	1	NA	NA	NA	4	NM_001293693	353188	Mm.269223	NM_153397	ENSMUSG00000037437	Adam32	-	a disintegrin and metallopeptidase domain 32	protein-coding	0.070000	0.686567	
mm_94980.1	chr11	31796347	31796547	+	1	NA	NA	NA	28100	NR_102310	414116	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.015000	0.582090	
mm_156535.1	chrX	151066648	151066848	+	1	NA	NA	NA	19578	NM_008001	14163	Mm.8142	NM_008001	ENSMUSG00000025265	Fgd1	ZFYVE3	FYVE, RhoGEF and PH domain containing 1	protein-coding	0.020000	0.587065	
mm_102220.1	chr11	54909698	54909898	-	1	NA	NA	NA	6944	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.015000	0.527363	
mm_15260.1	chr2	155013459	155013659	+	1	NA	NA	NA	-11	NM_015770	50518	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	0.005000	0.522388	-31(GTCTTTAAAAAT,-,0.00)
mm_103985.1	chr11	84827551	84827751	-	1	NA	NA	NA	1352	NM_177564	192970	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	0.000000	0.537313	
mm_13485.1	chr2	106382611	106382811	+	1	NA	NA	NA	140392	NR_040637	329483	Mm.246777	NR_040637	ENSMUSG00000087226	Gm14015	9330126M15|OTTMUSG00000015366	predicted gene 14015	ncRNA	0.015000	0.472637	
mm_67065.1	chr7	67720087	67720287	-	1	NA	NA	NA	39555	NM_183312	233335	Mm.60526	NM_183312	ENSMUSG00000030554	Synm	4930412K21Rik|AI852401|Dmn|E130104F11|Syn|Synemin	synemin, intermediate filament protein	protein-coding	0.005000	0.492537	-32(CCTTAAATACCA,+,0.00)
mm_69074.1	chr7	126975999	126976199	-	1	NA	NA	NA	185	NM_001347656	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.085000	0.636816	
mm_3178.1	chr1	135750999	135751199	+	1	NA	NA	NA	-14986	NM_013750	27280	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	0.020000	0.552239	
mm_13182.1	chr2	93030334	93030534	+	1	NA	NA	NA	1086	NR_110333	433456	Mm.235231	NM_001002794	ENSMUSG00000075027	4631405J19Rik	-	RIKEN cDNA 4631405J19 gene	ncRNA	0.025000	0.592040	
mm_29443.1	chr3	110143586	110143786	-	1	NA	NA	NA	-214	NM_030699	80883	Mm.39262	NM_030699	ENSMUSG00000059857	Ntng1	A930010C08Rik|AI853992|Lmnt1	netrin G1	protein-coding	0.120000	0.706468	
mm_97219.1	chr11	75630993	75631193	+	1	NA	NA	NA	73	NM_008916	19062	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.085000	0.601990	
mm_22583.1	chr3	13471522	13471722	+	1	NA	NA	NA	-33	NM_178631	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.165000	0.796020	
mm_15431.1	chr2	157135704	157135904	+	1	NA	NA	NA	-582	NM_018851	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.020000	0.348259	
mm_1691.1	chr1	75141693	75141893	+	1	NA	NA	NA	575	NM_026977	69171	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0.090000	0.636816	-34(GCGTTTATAAGC,-,0.00)
mm_161011.1	chr11	118513202	118513402	-	1	NA	NA	NA	36342	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.045000	0.641791	
mm_106529.1	chr11	120572818	120573018	-	1	NA	NA	NA	18	NM_011032	18453	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.155000	0.746269	12(GGATTTATAAAG,-,0.00)
mm_105111.1	chr11	100970518	100970718	-	1	NA	NA	NA	-1	NM_008986	19285	Mm.21864	NM_008986	ENSMUSG00000004044	Ptrf	2310075E07Rik|AW546441|Cav-p60|Cavin	polymerase I and transcript release factor	protein-coding	0.075000	0.666667	
mm_79619.1	chr9	58803431	58803631	+	1	NA	NA	NA	-19981	NM_001081192	330953	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0.015000	0.437811	50(TGGTCTAAAAAG,-,0.00)
mm_72772.1	chr8	86064701	86064901	+	1	NA	NA	NA	223799	NM_199446	102093	Mm.237296	NM_199446	ENSMUSG00000036879	Phkb	AI463271	phosphorylase kinase beta	protein-coding	0.000000	0.402985	
mm_62589.1	chr7	105640454	105640654	+	1	NA	NA	NA	14	NM_019502	14356	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0.060000	0.636816	
mm_117791.1	chr13	97137832	97138032	-	1	NA	NA	NA	-5	NM_001146043	320806	Mm.219675	NM_177266	ENSMUSG00000021666	Gfm2	6530419G12Rik|A930009M04Rik|EF-G2mt|EFG2|MST027|RRF2mt	G elongation factor, mitochondrial 2	protein-coding	0.070000	0.567164	48(CCTTCTTAAAGG,-,0.00)
mm_7955.1	chr1	133921277	133921477	-	1	NA	NA	NA	24	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.010000	0.592040	
mm_56474.1	chr6	99044320	99044520	-	1	NA	NA	NA	-16122	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.030000	0.512438	
mm_15151.1	chr2	154000349	154000549	+	1	NA	NA	NA	-7827	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.010000	0.447761	
mm_16709.1	chr2	7085510	7085710	-	1	NA	NA	NA	-4308	NM_001160292	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.000000	0.328358	
mm_46216.1	chr5	98513112	98513312	-	1	NA	NA	NA	-37548	NR_030484	735265		NR_030484	ENSMUSG00000105814	Mir703	Mirn703|mir-703|mmu-mir-703	microRNA 703	ncRNA	0.005000	0.482587	
mm_17261.1	chr2	25983106	25983306	-	1	NA	NA	NA	76	NM_001276360	227634	Mm.36834	NM_001115076	ENSMUSG00000026933	Camsap1	9530003A05Rik|C77823|PRO2405	calmodulin regulated spectrin-associated protein 1	protein-coding	0.175000	0.805970	
mm_166615.1	chr6	71371215	71371415	+	1	NA	NA	NA	-2112	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.010000	0.477612	14(CACTTTATATGC,-,0.00)
mm_170727.1	chr2	150933402	150933602	+	1	NA	NA	NA	23908	NM_001163476	69270	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0.075000	0.616915	
mm_120725.1	chr14	73138723	73138923	+	1	NA	NA	NA	-3687	NM_001170694	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.010000	0.457711	
mm_119762.1	chr14	54171706	54171906	+	1	NA	NA	NA	82123	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.517413	
mm_71903.1	chr8	70072716	70072916	+	1	NA	NA	NA	-108	NM_001293795	107770	Mm.37974	NM_181540	ENSMUSG00000036151	Tm6sf2	-	transmembrane 6 superfamily member 2	protein-coding	0.050000	0.641791	
mm_97235.1	chr11	75655833	75656033	+	1	NA	NA	NA	-82	NM_001080775	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.115000	0.726368	
mm_38070.1	chr4	134098572	134098772	-	1	NA	NA	NA	-3599	NM_013706	23833	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	0.010000	0.517413	
mm_143028.1	chr17	56609581	56609781	-	1	NA	NA	NA	90	NM_153152	224904	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0.085000	0.592040	
mm_148162.1	chr18	77713890	77714090	-	1	NA	NA	NA	20	NM_178670	212163	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	0.125000	0.696517	
mm_99024.1	chr11	98937602	98937802	+	1	NA	NA	NA	6	NM_009024	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.090000	0.746269	
mm_127543.1	chr15	102112943	102113143	+	1	NA	NA	NA	10055	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.015000	0.626866	
mm_26176.1	chr3	138288750	138288950	+	1	NA	NA	NA	11205	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.040000	0.557214	
mm_164222.1	chr15	85121716	85121916	-	1	NA	NA	NA	10141	NM_080470	140557	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	0.000000	0.238806	
mm_138908.1	chr17	43592429	43592629	+	1	NA	NA	NA	-1020	NR_045444	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.015000	0.482587	
mm_119728.1	chr14	54074874	54075074	+	1	NA	NA	NA	178955	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.487562	
mm_62298.1	chr7	100100211	100100411	+	1	NA	NA	NA	21189	NM_133692	67967	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0.015000	0.517413	
mm_145484.1	chr18	60382631	60382831	+	1	NA	NA	NA	6702	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.447761	
mm_64645.1	chr7	4024421	4024621	-	1	NA	NA	NA	38683	NM_001302677	52855	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.000000	0.293532	
mm_4462.1	chr1	172929946	172930146	+	1	NA	NA	NA	-26722	NM_008763	18313	Mm.377103	NM_008763	ENSMUSG00000037924	Olfr16	MOR23|MOR26713	olfactory receptor 16	protein-coding	0.005000	0.482587	
mm_10323.1	chr2	11250380	11250580	+	1	NA	NA	NA	78098	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.010000	0.487562	
mm_87159.1	chr10	36628172	36628372	+	1	NA	NA	NA	121465	NM_001253356	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0.010000	0.502488	
mm_94561.1	chr11	11684853	11685053	+	1	NA	NA	NA	-972	NM_009578	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.030000	0.577114	
mm_136808.1	chr17	12384297	12384497	+	1	NA	NA	NA	5788	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.035000	0.517413	
mm_35631.1	chr4	43499547	43499747	-	1	NA	NA	NA	13	NM_001013377	230098	Mm.331567	NM_001013377	ENSMUSG00000051517	Arhgef39	E130306D19Rik	Rho guanine nucleotide exchange factor (GEF) 39	protein-coding	0.120000	0.666667	
mm_122651.1	chr14	51910622	51910822	-	1	NA	NA	NA	2766	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.020000	0.487562	
mm_59489.1	chr7	27497241	27497441	+	1	NA	NA	NA	-1983	NM_198048	19153	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	0.020000	0.611940	
mm_135962.1	chr16	74760618	74760818	-	1	NA	NA	NA	-349806	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.010000	0.457711	
mm_149751.1	chr19	22692505	22692705	+	1	NA	NA	NA	-14	NM_001035245	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.005000	0.457711	
mm_3699.1	chr1	153762461	153762661	+	1	NA	NA	NA	13135	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.005000	0.402985	50(ACCCATATAAAG,-,0.00),52(CCATATAAAGGT,+,0.00)
mm_31548.1	chr4	55651595	55651795	+	1	NA	NA	NA	-119220	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.085000	0.641791	-48(ACCCTTAAAAGC,-,0.00),-47(CCCTTAAAAGCT,+,0.00),-46(CCTTAAAAGCTC,+,0.00)
mm_163064.1	chr11	66956495	66956695	+	1	NA	NA	NA	-43	NR_130645	71576	Mm.340077	NR_130315	ENSMUSG00000085683	9130409J20Rik	-	RIKEN cDNA 9130409J20 gene	ncRNA	0.030000	0.582090	
mm_147546.1	chr18	54839936	54840136	-	1	NA	NA	NA	150144	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.005000	0.487562	
mm_43823.1	chr5	142961094	142961294	+	1	NA	NA	NA	839	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.080000	0.661692	
mm_41447.1	chr5	90905262	90905462	+	1	NA	NA	NA	1463	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.020000	0.308458	69(TCTTAAAAGGTC,+,0.00)
mm_36044.1	chr4	57262566	57262766	-	1	NA	NA	NA	39171	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.020000	0.457711	
mm_4756.1	chr1	182288000	182288200	+	1	NA	NA	NA	-5341	NM_007853	13244	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.015000	0.562189	
mm_109675.1	chr12	113074712	113074912	+	1	NA	NA	NA	310	NM_029381	75671	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0.030000	0.606965	
mm_71690.1	chr8	61293681	61293881	+	1	NA	NA	NA	-4909	NR_045475	69279	Mm.417857	NR_045475	ENSMUSG00000099419	1700001D01Rik	-	RIKEN cDNA 1700001D01 gene	ncRNA	0.005000	0.333333	54(CTGTTTAAAAAC,-,0.00)
mm_45278.1	chr5	64865453	64865653	-	1	NA	NA	NA	62030	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.005000	0.502488	
mm_9507.1	chr1	173738016	173738216	-	1	NA	NA	NA	3693	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.000000	0.318408	
mm_80949.1	chr9	102864418	102864618	+	1	NA	NA	NA	29598	NM_001042607	20187	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0.025000	0.477612	
mm_72560.1	chr8	84073843	84074043	+	1	NA	NA	NA	7107	NM_009055	19724	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	0.015000	0.691542	
mm_72768.1	chr8	85700911	85701111	+	1	NA	NA	NA	106	NR_106189	102465898		NR_106189	ENSMUSG00000098388	Mir8109	Gm27495|mmu-mir-8109	microRNA 8109	ncRNA	0.135000	0.731343	
mm_9585.1	chr1	174031620	174031820	-	1	NA	NA	NA	35	NM_172648	226695	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	0.005000	0.457711	-28(TCATTTATACCC,+,0.00)
mm_3622.1	chr1	152750440	152750640	+	1	NA	NA	NA	-11	NM_001081197	71281	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0.010000	0.412935	
mm_95264.1	chr11	44962807	44963007	+	1	NA	NA	NA	154021	NR_045100	100504255	Mm.123608	NR_045100	ENSMUSG00000084773	Gm12159	OTTMUSG00000005475	predicted gene 12159	ncRNA	0.035000	0.552239	
mm_82702.1	chr9	22468166	22468366	-	1	NA	NA	NA	90	NM_018739	55934	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	0.125000	0.736318	
mm_150728.1	chr19	43689584	43689784	+	1	NA	NA	NA	-5	NM_053103	93685	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	0.100000	0.666667	
mm_80581.1	chr9	84104131	84104331	+	1	NA	NA	NA	155450	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.000000	0.427861	
mm_40289.1	chr5	43233791	43233991	+	1	NA	NA	NA	428	NM_001177379	231207	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.055000	0.666667	
mm_117218.1	chr13	64107087	64107287	-	1	NA	NA	NA	-17986	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.005000	0.383085	-19(CCTTTTAAACAT,+,0.00),2(GCATAAATAGAC,+,0.00)
mm_151719.1	chr19	4801263	4801463	-	1	NA	NA	NA	-7354	NM_001290123	19653	Mm.426069	NM_009032	ENSMUSG00000094936	Rbm4	4921506I22Rik|Lark1|Mlark|Rbm4a|lark	RNA binding motif protein 4	protein-coding	0.010000	0.442786	
mm_26145.1	chr3	138065083	138065283	+	1	NA	NA	NA	2205	NR_037975	329763	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA	0.045000	0.631841	
mm_56411.1	chr6	97212195	97212395	-	1	NA	NA	NA	1503	NM_022992	65106	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	0.030000	0.552239	
mm_48681.1	chr5	146261253	146261453	-	1	NA	NA	NA	29678	NM_153599	264064	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.075000	0.462687	
mm_25594.1	chr3	116899712	116899912	+	1	NA	NA	NA	38132	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.010000	0.393035	3(CCTTATATATGC,+,0.00)
mm_128875.1	chr15	73038703	73038903	-	1	NA	NA	NA	17009	NM_029640	76510	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.040000	0.507463	
mm_10132.1	chr2	4017614	4017814	+	1	NA	NA	NA	31	NM_001347086	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.015000	0.577114	
mm_121054.1	chr14	86172837	86173037	+	1	NA	NA	NA	-73033	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	0.015000	0.393035	-87(CCTTTTCTAGAG,+,0.00),38(CCTCTTATGCCC,+,0.00)
mm_101815.1	chr11	46389388	46389588	-	1	NA	NA	NA	27	NM_001281968	16428	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	0.030000	0.522388	
mm_2370.1	chr1	93227425	93227625	+	1	NA	NA	NA	-8372	NM_172463	208777	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	0.015000	0.666667	
mm_8463.1	chr1	153302355	153302555	-	1	NA	NA	NA	30331	NM_010683	226519	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	0.015000	0.417910	
mm_100135.1	chr11	115974812	115975012	+	1	NA	NA	NA	187	NM_133663	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.110000	0.761194	
mm_72439.1	chr8	83155682	83155882	+	1	NA	NA	NA	-9570	NM_001111304	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.010000	0.442786	
mm_75431.1	chr8	47288362	47288562	-	1	NA	NA	NA	940	NM_001286376	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.095000	0.681592	
mm_50557.1	chr6	49047709	49047909	+	1	NA	NA	NA	11291	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.020000	0.472637	
mm_35683.1	chr4	43669110	43669310	-	1	NA	NA	NA	239	NM_001085508	242409	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	0.090000	0.671642	
mm_152739.1	chr19	19005151	19005351	-	1	NA	NA	NA	-4134	NM_001289921	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.010000	0.522388	
mm_1596.1	chr1	74375146	74375346	+	1	NA	NA	NA	43	NM_013612	18173	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.020000	0.577114	
mm_4901.1	chr1	189827121	189827321	+	1	NA	NA	NA	95067	NM_026796	226830	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.030000	0.452736	
mm_29100.1	chr3	104817994	104818194	-	1	NA	NA	NA	211	NM_008619	17454	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0.090000	0.641791	
mm_42735.1	chr5	120629986	120630186	+	1	NA	NA	NA	4149	NM_001195094	546886	Mm.464847	NM_001195094	ENSMUSG00000094282	Cfap73	Ccdc42b|Gm5988	cilia and flagella associated protein 73	protein-coding	0.065000	0.597015	
mm_111585.1	chr12	101886848	101887048	-	1	NA	NA	NA	26223	NM_028446	109181	Mm.208618	NM_028446	ENSMUSG00000021188	Trip11	2610511G22Rik|3110031G15Rik|6030460N08Rik|AI450776|GMAP-210|TRIP230	thyroid hormone receptor interactor 11	protein-coding	0.005000	0.378109	
mm_154684.1	chrX	7922207	7922407	+	1	NA	NA	NA	2485	NM_013892	30052	Mm.4881	NM_013892	ENSMUSG00000039278	Pcsk1n	AI848336|KEP|PEN|PEN19|PEN20|Pan3|SAAS|SAASCT|bLEN|lLEN|proSAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding	0.110000	0.736318	
mm_50937.1	chr6	57702977	57703177	+	1	NA	NA	NA	622	NM_133737	71835	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.085000	0.656716	
mm_69009.1	chr7	126704050	126704250	-	1	NA	NA	NA	70	NM_001301374	12721	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.020000	0.557214	81(TTTTTAATAGAC,+,0.00)
mm_107958.1	chr12	72620595	72620795	+	1	NA	NA	NA	44133	NM_025522	66375	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.020000	0.467662	-13(GCCTTTAAAGAT,+,0.00),-12(CCTTTAAAGATC,+,0.00)
mm_162356.1	chr1	58449429	58449629	+	1	NA	NA	NA	-4043	NM_001285827	70225	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding	0.005000	0.487562	
mm_64025.1	chr7	140764822	140765022	+	1	NA	NA	NA	1090	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.020000	0.512438	
mm_153201.1	chr19	34629761	34629961	-	1	NA	NA	NA	10882	NM_053217	112419	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	0.000000	0.427861	-81(GCTTATATGAGG,+,0.00)
mm_81046.1	chr9	105470438	105470638	+	1	NA	NA	NA	24595	NM_175025	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.015000	0.442786	-85(TCCTATAAAGTC,+,0.00),38(AAGTCTAAAAGG,-,0.00)
mm_96398.1	chr11	67250467	67250667	+	1	NA	NA	NA	12755	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.020000	0.497512	-63(TTCTTTAAAGCC,+,0.00),-62(TCTTTAAAGCCG,+,0.00)
mm_82875.1	chr9	32451282	32451482	-	1	NA	NA	NA	57397	NM_001168354	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.035000	0.457711	79(GCATATATACAC,+,0.00)
mm_53742.1	chr6	145160803	145161003	+	1	NA	NA	NA	39164	NM_008511	16970	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.010000	0.487562	
mm_35273.1	chr4	19920100	19920300	-	1	NA	NA	NA	2366	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.000000	0.417910	46(GGGTTTAAAGGC,-,0.00)
mm_89524.1	chr10	94406107	94406307	+	1	NA	NA	NA	-107504	NR_033209	215472	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	0.000000	0.318408	
mm_141019.1	chr17	25129243	25129443	-	1	NA	NA	NA	-4048	NM_011930	26373	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.015000	0.507463	26(TCATTTAGAGCC,+,0.00)
mm_75587.1	chr8	61574047	61574247	-	1	NA	NA	NA	17022	NM_001293774	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.005000	0.467662	
mm_124280.1	chr14	103048273	103048473	-	1	NA	NA	NA	1361	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.010000	0.417910	
mm_62529.1	chr7	102238003	102238203	+	1	NA	NA	NA	12015	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.000000	0.402985	
mm_99083.1	chr11	99417047	99417247	+	1	NA	NA	NA	5112	NM_010661	268482	Mm.436651	NM_010661	ENSMUSG00000020912	Krt12	AI835216|K12|Krt-12|Krt1-12	keratin 12	protein-coding	0.015000	0.472637	
mm_105313.1	chr11	102880851	102881051	-	1	NA	NA	NA	24	NM_011431	20624	Mm.873	NM_011431	ENSMUSG00000020929	Eftud2	116kDa|Snrp116|U5-116kD	elongation factor Tu GTP binding domain containing 2	protein-coding	0.150000	0.731343	
mm_46622.1	chr5	108390856	108391056	-	1	NA	NA	NA	2583	NM_008806	18587	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0.000000	0.422886	
mm_14707.1	chr2	143062954	143063154	+	1	NA	NA	NA	-15	NM_021335	20639	Mm.1323	NM_021335	ENSMUSG00000008333	Snrpb2	2810052G09Rik	U2 small nuclear ribonucleoprotein B	protein-coding	0.105000	0.611940	
mm_5448.1	chr1	36244027	36244227	-	1	NA	NA	NA	175	NM_198899	320011	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	0.120000	0.726368	
mm_73700.1	chr8	111686420	111686620	+	1	NA	NA	NA	3154	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.015000	0.492537	-100(GCTTAAAGAGGG,+,0.00)
mm_45056.1	chr5	41818916	41819116	-	1	NA	NA	NA	25299	NM_001310601	665775	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0.015000	0.457711	
mm_53408.1	chr6	132507660	132507860	+	1	NA	NA	NA	-62082	NM_011174	19131	Mm.425348	NM_011174	ENSMUSG00000059934	Prh1	MP2|Prp	proline rich protein HaeIII subfamily 1	protein-coding	0.005000	0.422886	-33(CTCCTTATAAAG,-,0.00),-31(CCTTATAAAGAC,+,0.00)
mm_23163.1	chr3	40708827	40709027	+	1	NA	NA	NA	56	NM_178386	73333	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	0.075000	0.597015	
mm_105835.1	chr11	113565666	113565866	-	1	NA	NA	NA	49	NM_001166503	69806	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0.075000	0.661692	
mm_139377.1	chr17	51833152	51833352	+	1	NA	NA	NA	38	NM_001163632	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.085000	0.701493	
mm_84289.1	chr9	63149081	63149281	-	1	NA	NA	NA	-220	NM_001163758	207667	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.130000	0.776119	
mm_41649.1	chr5	98254052	98254252	+	1	NA	NA	NA	-32	NM_010203	14176	Mm.5055	NM_010203	ENSMUSG00000029337	Fgf5	Fgf-5|HBGF-5|angora|go	fibroblast growth factor 5	protein-coding	0.105000	0.671642	
mm_135585.1	chr16	50578403	50578603	-	1	NA	NA	NA	-12000	NR_040566	75211	Mm.399337	NR_040566		4930542D17Rik	-	RIKEN cDNA 4930542D17 gene	ncRNA	0.025000	0.437811	-34(TTCTATTAAAAC,-,0.00)
mm_100888.1	chr11	6065487	6065687	-	1	NA	NA	NA	161	NM_001174054	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	0.185000	0.786070	
mm_4568.1	chr1	177467196	177467396	+	1	NA	NA	NA	21475	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.025000	0.567164	
mm_63833.1	chr7	135396246	135396446	+	1	NA	NA	NA	-14021	NM_183193	270004	Mm.132547	NM_183193	ENSMUSG00000048377	Foxi2	B130055A05Rik	forkhead box I2	protein-coding	0.025000	0.577114	
mm_135410.1	chr16	44999667	44999867	-	1	NA	NA	NA	56089	NM_001128132	74603	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0.010000	0.442786	
mm_62174.1	chr7	97399946	97400146	+	1	NA	NA	NA	43	NM_024220	68197	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding	0.085000	0.587065	
mm_166046.1	chr4	130913998	130914198	-	1	NA	NA	NA	764	NM_010686	16792	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3	lysosomal-associated protein transmembrane 5	protein-coding	0.010000	0.547264	
mm_35073.1	chr4	6989540	6989740	-	1	NA	NA	NA	1083	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.025000	0.527363	
mm_96158.1	chr11	61486019	61486219	+	1	NA	NA	NA	675	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.045000	0.597015	
mm_29903.1	chr3	131470869	131471069	-	1	NA	NA	NA	-93799	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.005000	0.587065	70(TACTTTATAAAG,-,0.00),72(CTTTATAAAGGG,+,0.00),72(CTTTATAAAGGG,-,0.00)
mm_33511.1	chr4	130915916	130916116	+	1	NA	NA	NA	2682	NM_010686	16792	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3	lysosomal-associated protein transmembrane 5	protein-coding	0.035000	0.582090	
mm_156084.1	chrX	110811275	110811475	+	1	NA	NA	NA	-3004	NM_008901	18994	Mm.56946	NM_008901	ENSMUSG00000056854	Pou3f4	Brn-4|Brn4|OTF-9|Otf9|Slf|oct-9	POU domain, class 3, transcription factor 4	protein-coding	0.005000	0.422886	
mm_62523.1	chr7	102230730	102230930	+	1	NA	NA	NA	7802	NR_111937	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.005000	0.457711	
mm_121913.1	chr14	22452594	22452794	-	1	NA	NA	NA	90104	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.010000	0.522388	
mm_76573.1	chr8	88949888	88950088	-	1	NA	NA	NA	-74747	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.025000	0.577114	
mm_24893.1	chr3	96161956	96162156	+	1	NA	NA	NA	86	NM_181409	194126	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	0.025000	0.542289	
mm_81419.1	chr9	109055882	109056082	+	1	NA	NA	NA	1116	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.030000	0.522388	
mm_51668.1	chr6	86371420	86371620	+	1	NA	NA	NA	-20	NM_026506	68011	Mm.276802	NM_026506	ENSMUSG00000057278	Snrpg	2810024K17Rik|AL022803|SMG|sm-G|snRNP-G	small nuclear ribonucleoprotein polypeptide G	protein-coding	0.095000	0.601990	
mm_163627.1	chr13	57331911	57332111	+	1	NA	NA	NA	-436222	NM_001302373	26946	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding	0.020000	0.537313	
mm_82333.1	chr9	9238931	9239131	-	1	NA	NA	NA	-18	NM_027823	71544	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0.130000	0.721393	
mm_111249.1	chr12	84876372	84876572	-	1	NA	NA	NA	23	NM_013589	16997	Mm.3900	NM_013589	ENSMUSG00000002020	Ltbp2	AW208642	latent transforming growth factor beta binding protein 2	protein-coding	0.080000	0.626866	
mm_78150.1	chr9	21015883	21016083	+	1	NA	NA	NA	43	NM_010493	15894	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0.065000	0.666667	-33(GACTATAAAAGC,-,0.00)
mm_37959.1	chr4	133352742	133352942	-	1	NA	NA	NA	-13527	NM_199306	230796	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	0.040000	0.542289	
mm_148943.1	chr19	7206598	7206798	+	1	NA	NA	NA	-414	NM_134150	107260	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	0.055000	0.567164	
mm_111904.1	chr12	108765718	108765918	-	1	NA	NA	NA	-27493	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.025000	0.552239	
mm_87038.1	chr10	28672192	28672392	+	1	NA	NA	NA	3932	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.000000	0.363184	3(TTTTTTAGAGAG,+,0.00)
mm_77642.1	chr8	124406286	124406486	-	1	NA	NA	NA	27550	NM_171824	209966	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	0.005000	0.442786	
mm_100188.1	chr11	116680186	116680386	+	1	NA	NA	NA	5689	NR_028570	100216538		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0.015000	0.631841	
mm_40463.1	chr5	53633978	53634178	+	1	NA	NA	NA	43592	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.000000	0.407960	
mm_115052.1	chr13	100651209	100651409	+	1	NA	NA	NA	-34	NM_027139	108143	Mm.301148	NM_027139	ENSMUSG00000052293	Taf9	2310012M09Rik|AA673500|AU045423|TAFII31|TAFII32|Taf2g	TATA-box binding protein associated factor 9	protein-coding	0.130000	0.726368	
mm_35592.1	chr4	43005803	43006003	-	1	NA	NA	NA	4398	NM_001163233	60534	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	0.000000	0.442786	
mm_102732.1	chr11	67248563	67248763	-	1	NA	NA	NA	10851	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.030000	0.552239	
mm_61290.1	chr7	67647370	67647570	+	1	NA	NA	NA	60	NM_025905	67009	Mm.249356	NM_025905	ENSMUSG00000030555	Ttc23	1600012K10Rik	tetratricopeptide repeat domain 23	protein-coding	0.010000	0.402985	
mm_166755.1	chr6	126853026	126853226	+	1	NA	NA	NA	28	NM_009650	11642	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	0.000000	0.447761	69(GACTTTAAAAGT,-,0.00)
mm_104363.1	chr11	94321804	94322004	-	1	NA	NA	NA	7	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.095000	0.681592	
mm_143063.1	chr17	57011298	57011498	-	1	NA	NA	NA	-110	NM_133801	98053	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0.095000	0.572139	-32(TGGTATATAAAC,-,0.00)
mm_17980.1	chr2	37703241	37703441	-	1	NA	NA	NA	-56056	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding	0.170000	0.776119	
mm_154170.1	chr19	58729959	58730159	-	1	NA	NA	NA	1172	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.005000	0.527363	
mm_3434.1	chr1	150101204	150101404	+	1	NA	NA	NA	1273	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.452736	
mm_163263.1	chr11	113180747	113180947	+	1	NA	NA	NA	20991	NR_015556	72386	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.005000	0.572139	
mm_32152.1	chr4	99929388	99929588	+	1	NA	NA	NA	37	NM_028132	72157	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.075000	0.676617	
mm_104600.1	chr11	97149955	97150155	-	1	NA	NA	NA	-343	NM_198100	73174	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0.040000	0.641791	
mm_14446.1	chr2	131068623	131068823	+	1	NA	NA	NA	-4909	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.000000	0.417910	
mm_136148.1	chr16	87554140	87554340	-	1	NA	NA	NA	910	NM_144854	224419	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	0.010000	0.393035	
mm_130609.1	chr15	99853592	99853792	-	1	NA	NA	NA	21764	NM_001113545	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.010000	0.462687	
mm_80184.1	chr9	72306574	72306774	+	1	NA	NA	NA	31786	NM_001311105	235469	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	0.010000	0.373134	
mm_91129.1	chr10	19594506	19594706	-	1	NA	NA	NA	2657	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.000000	0.512438	
mm_69054.1	chr7	126883883	126884083	-	1	NA	NA	NA	984	NM_001163775	381921	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	0.035000	0.661692	
mm_153835.1	chr19	46326149	46326349	-	1	NA	NA	NA	617	NM_001347454	73728	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.055000	0.666667	
mm_140013.1	chr17	73204028	73204228	+	1	NA	NA	NA	96143	NM_001177967	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.020000	0.502488	
mm_137319.1	chr17	24895042	24895242	+	1	NA	NA	NA	22	NM_023260	79044	Mm.328851	NM_023260	ENSMUSG00000038880	Mrps34	0610007F04Rik|5330430D13Rik|AV001970|Tce2	mitochondrial ribosomal protein S34	protein-coding	0.110000	0.616915	
mm_52961.1	chr6	123123421	123123621	+	1	NA	NA	NA	205	NM_001170333	26888	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0.010000	0.383085	
mm_168450.1	chr1	14113137	14113337	+	1	NA	NA	NA	196962	NM_001310459	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.025000	0.467662	
mm_102288.1	chr11	55405147	55405347	-	1	NA	NA	NA	14833	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.010000	0.572139	
mm_121024.1	chr14	79587710	79587910	+	1	NA	NA	NA	119	NM_026474	67955	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0.050000	0.537313	
mm_78380.1	chr9	27791102	27791302	+	1	NA	NA	NA	-67	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.025000	0.497512	
mm_168425.1	chr11	33428379	33428579	-	1	NA	NA	NA	85267	NR_110973	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.060000	0.592040	
mm_156097.1	chrX	112496966	112497166	+	1	NA	NA	NA	1792	NM_001168590	67715	Mm.45323	NM_026333	ENSMUSG00000025528	2010106E10Rik	-	RIKEN cDNA 2010106E10 gene	protein-coding	0.000000	0.462687	
mm_155484.1	chrX	73681128	73681328	+	1	NA	NA	NA	8095	NM_001142809	102857	Mm.274553	NM_133987	ENSMUSG00000019558	Slc6a8	AA589632|CRT|CRTR|CT1|CTR5|Creat	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	protein-coding	0.010000	0.502488	
mm_14051.1	chr2	122377486	122377686	+	1	NA	NA	NA	-8668	NM_001013829	435684	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0.065000	0.517413	
mm_13177.1	chr2	92954382	92954582	+	1	NA	NA	NA	39381	NM_030725	80976	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	0.020000	0.472637	
mm_84619.1	chr9	70503662	70503862	-	1	NA	NA	NA	-37	NM_033604	93836	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	0.150000	0.731343	
mm_67371.1	chr7	79841595	79841795	-	1	NA	NA	NA	657	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.045000	0.592040	
mm_20731.1	chr2	137081915	137082115	-	1	NA	NA	NA	34505	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.005000	0.368159	55(CAGTTTTAAGGG,-,0.00)
mm_136017.1	chr16	76226501	76226701	-	1	NA	NA	NA	103988	NR_040575	78215	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.030000	0.497512	
mm_122194.1	chr14	31780880	31781080	-	1	NA	NA	NA	49435	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.025000	0.407960	
mm_24418.1	chr3	90526729	90526929	+	1	NA	NA	NA	-20	NM_025393	66166	Mm.24006	NM_025393	ENSMUSG00000042306	S100a14	1110013O05Rik|S100a15|S114	S100 calcium binding protein A14	protein-coding	0.010000	0.621891	
mm_103630.1	chr11	78936352	78936552	-	1	NA	NA	NA	11161	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.010000	0.527363	
mm_34742.1	chr4	152274027	152274227	+	1	NA	NA	NA	-235	NM_178406	100129	Mm.23235	NM_178406	ENSMUSG00000042804	Gpr153	1110065N12Rik|AI449320|PGR1	G protein-coupled receptor 153	protein-coding	0.155000	0.830846	
mm_149719.1	chr19	21777428	21777628	+	1	NA	NA	NA	-812	NM_001033759	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.025000	0.542289	
mm_90393.1	chr10	127322819	127323019	+	1	NA	NA	NA	-808	NM_146011	216445	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.015000	0.552239	
mm_105596.1	chr11	106750210	106750410	-	1	NA	NA	NA	-916	NM_001271375	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.025000	0.492537	
mm_172159.1	chr6	43625824	43626024	+	1	NA	NA	NA	40354	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.065000	0.651741	
mm_155539.1	chrX	74304914	74305114	+	1	NA	NA	NA	2	NM_010273	14567	Mm.205830	NM_010273	ENSMUSG00000015291	Gdi1	GDIA|GDIalpha	guanosine diphosphate (GDP) dissociation inhibitor 1	protein-coding	0.095000	0.671642	
mm_103522.1	chr11	76846907	76847107	-	1	NA	NA	NA	1	NM_007754	12874	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0.110000	0.696517	
mm_71833.1	chr8	68899398	68899598	+	1	NA	NA	NA	18943	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.030000	0.527363	
mm_77820.1	chr9	3335420	3335620	+	1	NA	NA	NA	289	NM_026303	67667	Mm.116968	NM_026303	ENSMUSG00000025899	Alkbh8	4930562C03Rik|8030431D03Rik|9430088N01Rik|Abh8	alkB homolog 8, tRNA methyltransferase	protein-coding	0.035000	0.537313	
mm_121126.1	chr14	101840702	101840902	+	1	NA	NA	NA	179	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.030000	0.388060	
mm_128454.1	chr15	50773070	50773270	-	1	NA	NA	NA	115879	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.005000	0.318408	
mm_12913.1	chr2	84851352	84851552	+	1	NA	NA	NA	10826	NM_001083809	72401	Mm.22716	NM_024497	ENSMUSG00000027075	Slc43a1	2610016F07Rik|AA986141|Lat3|PB39|Pov1|R00504	solute carrier family 43, member 1	protein-coding	0.035000	0.611940	
mm_40121.1	chr5	34989293	34989493	+	1	NA	NA	NA	-9685	NM_001163512	71729	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.035000	0.477612	
mm_49214.1	chr6	15728023	15728223	+	1	NA	NA	NA	7462	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.005000	0.482587	
mm_43206.1	chr5	129160660	129160860	+	1	NA	NA	NA	64010	NM_001347486	243277	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding	0.015000	0.447761	
mm_153251.1	chr19	36625917	36626117	-	1	NA	NA	NA	63462	NR_033510	668215	Mm.394223	NR_033510	ENSMUSG00000087579	1500017E21Rik	-	RIKEN cDNA 1500017E21 gene	ncRNA	0.005000	0.592040	
mm_167715.1	chr9	98033078	98033278	-	1	NA	NA	NA	-11	NM_022319	64085	Mm.440903	NM_022319	ENSMUSG00000032452	Clstn2	2900042C18Rik|AI448973|CSTN2|Cs2|Cst-2|mKIAA4134	calsyntenin 2	protein-coding	0.140000	0.756219	
mm_79718.1	chr9	61417713	61417913	+	1	NA	NA	NA	45447	NM_001083927	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.015000	0.467662	
mm_159832.1	chr5	125532364	125532564	+	1	NA	NA	NA	46	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0.175000	0.820896	
mm_159688.1	chr5	17476022	17476222	+	1	NA	NA	NA	0	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	0.005000	0.482587	
mm_41359.1	chr5	90506497	90506697	+	1	NA	NA	NA	-12352	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.010000	0.437811	
mm_10299.1	chr2	10523216	10523416	+	1	NA	NA	NA	5712	NR_035417	100316668		NR_035417	ENSMUSG00000080657	Mir669i	Mirn669i|mir-669i|mmu-mir-669i	microRNA 669i	ncRNA	0.000000	0.532338	
mm_38905.1	chr4	149954938	149955138	-	1	NA	NA	NA	-32	NM_029035	74646	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	0.110000	0.686567	
mm_106080.1	chr11	116174719	116174919	-	1	NA	NA	NA	-6641	NM_172571	217335	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.045000	0.597015	
mm_132201.1	chr16	32550226	32550426	+	1	NA	NA	NA	54045	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.020000	0.587065	
mm_111989.1	chr12	110601857	110602057	-	1	NA	NA	NA	562	NM_030238	13424	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0.100000	0.671642	
mm_131137.1	chr16	6348437	6348637	+	1	NA	NA	NA	372950	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA	0.050000	0.547264	
mm_169017.1	chr13	109902511	109902711	+	1	NA	NA	NA	-1198	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.105000	0.731343	
mm_153000.1	chr19	30105241	30105441	-	1	NA	NA	NA	70100	NM_138595	104174	Mm.274852	NM_138595	ENSMUSG00000024827	Gldc	D030049L12Rik|D19Wsu57e	glycine decarboxylase	protein-coding	0.010000	0.477612	
mm_82785.1	chr9	28996005	28996205	-	1	NA	NA	NA	967024	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.020000	0.482587	
mm_46030.1	chr5	91761528	91761728	-	1	NA	NA	NA	5672	NR_045383	73452	Mm.396233	NR_045383	ENSMUSG00000101978	1700063O14Rik	-	RIKEN cDNA 1700063O14 gene	ncRNA	0.050000	0.527363	
mm_103735.1	chr11	80053214	80053414	-	1	NA	NA	NA	27677	NM_001277106	54394	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.010000	0.402985	
mm_151454.1	chr19	57950440	57950640	+	1	NA	NA	NA	-100627	NR_049196	100885835		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0.005000	0.412935	
mm_36628.1	chr4	91376355	91376555	-	1	NA	NA	NA	36	NM_001347149	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding	0.070000	0.592040	78(CCTTTTAAGACG,+,0.00)
mm_37951.1	chr4	133262989	133263189	-	1	NA	NA	NA	-2	NM_031393	269589	Mm.25660	NM_031393	ENSMUSG00000028860	Sytl1	9030417L18|PSGL-1|Slp1	synaptotagmin-like 1	protein-coding	0.025000	0.606965	
mm_50408.1	chr6	48737279	48737479	+	1	NA	NA	NA	-1668	NM_175860	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.015000	0.412935	
mm_46301.1	chr5	100500492	100500692	-	1	NA	NA	NA	47	NM_172714	231506	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0.175000	0.776119	
mm_28060.1	chr3	84259490	84259690	-	1	NA	NA	NA	189	NM_001271727	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.085000	0.606965	
mm_53922.1	chr6	4086837	4087037	-	1	NA	NA	NA	-10	NM_009748	12068	Mm.286457	NM_009748	ENSMUSG00000032757	Bet1	AW555236|Bet-1	Bet1 golgi vesicular membrane trafficking protein	protein-coding	0.060000	0.527363	
mm_110478.1	chr12	51851675	51851875	-	1	NA	NA	NA	-22239	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.010000	0.462687	
mm_89535.1	chr10	94514912	94515112	+	1	NA	NA	NA	155	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.125000	0.736318	
mm_161396.1	chr14	105160432	105160632	-	1	NA	NA	NA	16795	NM_134077	74213	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0.005000	0.293532	
mm_27244.1	chr3	36599326	36599526	-	1	NA	NA	NA	13963	NM_027810	71492	Mm.286187	NM_027810	ENSMUSG00000037325	Bbs7	8430406N16Rik	Bardet-Biedl syndrome 7 (human)	protein-coding	0.005000	0.402985	
mm_116592.1	chr13	48535921	48536121	-	1	NA	NA	NA	93	NR_029656	387247		NR_029656	ENSMUSG00000065453	Mirlet7d	Mirnlet7d|let-7d|mmu-let-7d	microRNA let7d	ncRNA	0.020000	0.447761	
mm_88714.1	chr10	80156646	80156846	+	1	NA	NA	NA	7064	NM_001305799	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.040000	0.587065	
mm_111218.1	chr12	84448891	84449091	-	1	NA	NA	NA	-674	NM_001313967	104776	Mm.247510	NM_134042	ENSMUSG00000021238	Aldh6a1	1110038I05Rik|Mmsdh	aldehyde dehydrogenase family 6, subfamily A1	protein-coding	0.005000	0.402985	
mm_1675.1	chr1	74794615	74794815	+	1	NA	NA	NA	2696	NM_009518	22409	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0.110000	0.701493	
mm_14872.1	chr2	148799611	148799811	+	1	NA	NA	NA	872	NM_009978	13012	Mm.20435	NM_009978	ENSMUSG00000027442	Cst8	Cres|Cst-rs1	cystatin 8 (cystatin-related epididymal spermatogenic)	protein-coding	0.015000	0.432836	
mm_93257.1	chr10	95548829	95549029	-	1	NA	NA	NA	10392	NR_037212	100526463		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0.000000	0.293532	
mm_17386.1	chr2	27071935	27072135	-	1	NA	NA	NA	126	NM_025376	66139	Mm.330087	NM_025376	ENSMUSG00000009214	Tmem8c	1110002H13Rik|AI131587	transmembrane protein 8C	protein-coding	0.015000	0.601990	
mm_14311.1	chr2	129198663	129198863	+	1	NA	NA	NA	-10	NM_015747	20515	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.135000	0.696517	6(GGCTATAAATAG,-,0.00)
mm_4283.1	chr1	171638915	171639115	+	1	NA	NA	NA	2885	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.517413	
mm_65716.1	chr7	28378292	28378492	-	1	NA	NA	NA	836	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.055000	0.631841	
mm_31875.1	chr4	80834270	80834470	+	1	NA	NA	NA	157	NM_001282015	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.005000	0.482587	
mm_94411.1	chr11	5803175	5803375	+	1	NA	NA	NA	521	NM_018870	56012	Mm.219627	NM_018870	ENSMUSG00000020475	Pgam2	-	phosphoglycerate mutase 2	protein-coding	0.025000	0.582090	
mm_76440.1	chr8	85019473	85019673	-	1	NA	NA	NA	-5042	NR_052011	212989	Mm.215154	NM_001130194	ENSMUSG00000052819	Best2	Vmd2l1	bestrophin 2	protein-coding	0.035000	0.587065	
mm_16782.1	chr2	9889440	9889640	-	1	NA	NA	NA	0	NR_040511	77682	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA	0.040000	0.577114	
mm_621.1	chr1	40085993	40086193	+	1	NA	NA	NA	-242	NR_037980	100047133	Mm.447052	NR_037980	ENSMUSG00000097899	Gm16894	-	predicted gene, 16894	ncRNA	0.030000	0.447761	
mm_115629.1	chr13	12106763	12106963	-	1	NA	NA	NA	82	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.125000	0.810945	
mm_166650.1	chr6	86605490	86605690	+	1	NA	NA	NA	-22584	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.020000	0.587065	
mm_134243.1	chr16	13189766	13189966	-	1	NA	NA	NA	-66615	NM_001122667	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.025000	0.457711	
mm_131294.1	chr16	11398183	11398383	+	1	NA	NA	NA	-7365	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.025000	0.482587	
mm_30504.1	chr3	158016327	158016527	-	1	NA	NA	NA	15327	NM_001093753	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.040000	0.467662	
mm_92665.1	chr10	80433489	80433689	-	1	NA	NA	NA	64	NM_001164150	21423	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.145000	0.766169	
mm_167737.1	chr9	106396547	106396747	+	1	NA	NA	NA	28015	NM_153459	235584	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.000000	0.482587	
mm_124276.1	chr14	103033421	103033621	-	1	NA	NA	NA	282	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.035000	0.512438	
mm_13050.1	chr2	91099528	91099728	+	1	NA	NA	NA	2950	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.000000	0.482587	
mm_150031.1	chr19	29374272	29374472	+	1	NA	NA	NA	6934	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.000000	0.228856	
mm_84895.1	chr9	79793431	79793631	-	1	NA	NA	NA	-101	NM_133718	69981	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	0.100000	0.656716	
mm_156492.1	chrX	144336031	144336231	+	1	NA	NA	NA	18165	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.020000	0.507463	
mm_70149.1	chr7	143459301	143459501	-	1	NA	NA	NA	1649	NM_009876	12577	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.130000	0.726368	
mm_85401.1	chr9	103364883	103365083	-	1	NA	NA	NA	-4	NM_001134427	321022	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.175000	0.830846	
mm_35718.1	chr4	44526648	44526848	-	1	NA	NA	NA	-176052	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0.010000	0.562189	
mm_97164.1	chr11	75489295	75489495	+	1	NA	NA	NA	2618	NM_138659	192159	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	0.005000	0.313433	
mm_134422.1	chr16	17893368	17893568	-	1	NA	NA	NA	-735	NM_009435	22114	Mm.439725	NM_009435	ENSMUSG00000041566	Tssk1	Stk22a|TSK-1|Tsk1|Tssk|Tssk1b	testis-specific serine kinase 1	protein-coding	0.005000	0.472637	
mm_88560.1	chr10	79633507	79633707	+	1	NA	NA	NA	4311	NM_001024539	216148	Mm.39424	NM_001024539	ENSMUSG00000020312	Shc2	6720466E06|SCK|ShcB|Sli	SHC (Src homology 2 domain containing) transforming protein 2	protein-coding	0.015000	0.587065	
mm_22702.1	chr3	18054406	18054606	+	1	NA	NA	NA	181	NM_021560	59058	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0.085000	0.656716	
mm_93447.1	chr10	109903859	109904059	-	1	NA	NA	NA	96260	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.030000	0.467662	
mm_94218.1	chr11	3193470	3193670	+	1	NA	NA	NA	-107	NM_030207	78887	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.065000	0.547264	
mm_143727.1	chr17	81378953	81379153	-	1	NA	NA	NA	-313968	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.010000	0.378109	23(GTCTTTTAAAGA,-,0.00),24(TCTTTTAAAGAG,+,0.00)
mm_42926.1	chr5	122724897	122725097	+	1	NA	NA	NA	17453	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.040000	0.467662	
mm_72911.1	chr8	90955307	90955507	+	1	NA	NA	NA	23158	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.030000	0.547264	
mm_132087.1	chr16	30601657	30601857	+	1	NA	NA	NA	2034	NM_177632	224093	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.050000	0.611940	
mm_163710.1	chr13	109260565	109260765	+	1	NA	NA	NA	-64079	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.030000	0.537313	
mm_157380.1	chrX	37901273	37901473	-	1	NA	NA	NA	397	NM_023894	104384	Mm.156958	NM_023894	ENSMUSG00000068048	Rhox9	1600026O01Rik|Gpbox|Psx2	reproductive homeobox 9	protein-coding	0.025000	0.552239	
mm_45883.1	chr5	88328458	88328658	-	1	NA	NA	NA	11246	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.005000	0.432836	
mm_101651.1	chr11	36628686	36628886	-	1	NA	NA	NA	315455	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.010000	0.422886	
mm_49038.1	chr6	4759883	4760083	+	1	NA	NA	NA	12677	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.015000	0.422886	-33(CCTTTAAGGCCG,+,0.00)
mm_142412.1	chr17	45549465	45549665	-	1	NA	NA	NA	112	NM_001013749	210573	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0.085000	0.796020	19(CCCTTTCTAGGC,+,0.00)
mm_78886.1	chr9	44603607	44603807	+	1	NA	NA	NA	-1185	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.020000	0.467662	
mm_40690.1	chr5	65763924	65764124	+	1	NA	NA	NA	503	NM_001024917	333789	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.140000	0.766169	
mm_165921.1	chr4	59890694	59890894	+	1	NA	NA	NA	24262	NM_021053	30936	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0.005000	0.407960	
mm_117562.1	chr13	85282798	85282998	-	1	NA	NA	NA	6588	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.000000	0.313433	
mm_150143.1	chr19	31868671	31868871	+	1	NA	NA	NA	10	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.025000	0.462687	
mm_56909.1	chr6	119330476	119330676	-	1	NA	NA	NA	190	NM_172492	211187	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	0.070000	0.671642	
mm_123102.1	chr14	55882095	55882295	-	1	NA	NA	NA	2061	NM_019820	56410	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0.010000	0.502488	
mm_22964.1	chr3	32529459	32529659	+	1	NA	NA	NA	77	NM_024200	67414	Mm.290414	NM_024200	ENSMUSG00000027668	Mfn1	2310002F04Rik|6330416C07Rik|D3Ertd265e|HR2|mKIAA4032	mitofusin 1	protein-coding	0.100000	0.736318	
mm_72843.1	chr8	88300351	88300551	+	1	NA	NA	NA	6247	NM_001037724	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.015000	0.601990	
mm_79855.1	chr9	64960769	64960969	+	1	NA	NA	NA	37	NM_001077631	69882	Mm.272616	NM_175153	ENSMUSG00000034263	Vwa9	2010321M09Rik	von Willebrand factor A domain containing 9	protein-coding	0.090000	0.656716	
mm_160625.1	chr9	98856380	98856580	+	1	NA	NA	NA	-111	NM_001134661	623186	Mm.477438	NM_001134661	ENSMUSG00000063058	Prr23a2	EG623186|Gm6406	proline rich 23A, member 2	protein-coding	0.075000	0.611940	
mm_49403.1	chr6	28426397	28426597	+	1	NA	NA	NA	-1404	NM_019569	56223	Mm.31708	NM_019569	ENSMUSG00000029707	Fscn3	-	fascin actin-bundling protein 3	protein-coding	0.010000	0.442786	
mm_124502.1	chr14	121879451	121879651	-	1	NA	NA	NA	-143	NR_130999	78312	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0.025000	0.467662	
mm_162964.1	chr11	9048938	9049138	+	1	NA	NA	NA	-47	NM_177576	194974	Mm.79210	NM_177576	ENSMUSG00000040985	Sun3	Sunc1	Sad1 and UNC84 domain containing 3	protein-coding	0.055000	0.616915	
mm_94670.1	chr11	17248073	17248273	+	1	NA	NA	NA	-9374	NM_020558	57316	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.015000	0.467662	
mm_64409.1	chr7	142511961	142512161	+	1	NA	NA	NA	-5290	NR_033261	677289	Mm.350054	NR_033261	ENSMUSG00000043795	Prr33	ENSMUSG00000043795|Gm14492|OTTMUSG00000016823	proline rich 33	ncRNA	0.005000	0.552239	
mm_60353.1	chr7	44384022	44384222	+	1	NA	NA	NA	-4	NM_001114116	20981	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	0.090000	0.771144	
mm_149272.1	chr19	10582220	10582420	+	1	NA	NA	NA	-4934	NR_126092	72982	Mm.391194	NM_028411	ENSMUSG00000024666	Tmem138	1700113I01Rik|2900055D14Rik	transmembrane protein 138	protein-coding	0.035000	0.542289	
mm_4225.1	chr1	171344856	171345056	+	1	NA	NA	NA	689	NM_001242580	27045	Mm.12915	NM_012049	ENSMUSG00000013997	Nit1	AI255805|ESTM30|W57327	nitrilase 1	protein-coding	0.035000	0.472637	
mm_65352.1	chr7	24997504	24997704	-	1	NA	NA	NA	8333	NM_001290469	232975	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.035000	0.582090	
mm_106270.1	chr11	117970249	117970449	-	1	NA	NA	NA	-983	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.030000	0.507463	-99(GCCTTTATAGAT,+,0.00)
mm_80437.1	chr9	77935279	77935479	+	1	NA	NA	NA	18014	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.010000	0.368159	
mm_59412.1	chr7	27121443	27121643	+	1	NA	NA	NA	1588	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.005000	0.557214	
mm_132334.1	chr16	33819483	33819683	+	1	NA	NA	NA	-10082	NM_010580	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.010000	0.557214	
mm_113368.1	chr13	32996905	32997105	+	1	NA	NA	NA	-7536	NM_009256	20723	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0.005000	0.442786	
mm_19418.1	chr2	91929798	91929998	-	1	NA	NA	NA	1804	NM_001291481	17242	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.010000	0.417910	
mm_65106.1	chr7	19307099	19307299	-	1	NA	NA	NA	2846	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.020000	0.601990	
mm_56805.1	chr6	116657333	116657533	-	1	NA	NA	NA	6749	NM_001166580	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.015000	0.512438	
mm_36264.1	chr4	63558636	63558836	-	1	NA	NA	NA	-1624	NM_144905	230279	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.190000	0.815920	
mm_140098.1	chr17	78272345	78272545	+	1	NA	NA	NA	72197	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.030000	0.462687	
mm_66459.1	chr7	44892294	44892494	-	1	NA	NA	NA	30	NM_001331208	75613	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	0.150000	0.716418	
mm_171835.1	chr5	149050633	149050833	-	1	NA	NA	NA	883	NM_001313894	15289	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.025000	0.427861	10(TCCTAAAAAGCC,+,0.00)
mm_93432.1	chr10	109010607	109010807	-	1	NA	NA	NA	268	NM_009306	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding	0.055000	0.671642	
mm_129999.1	chr15	86186061	86186261	-	1	NA	NA	NA	-20	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.055000	0.621891	
mm_23221.1	chr3	48954624	48954824	+	1	NA	NA	NA	-345624	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo	0.010000	0.407960	
mm_36049.1	chr4	57300283	57300483	-	1	NA	NA	NA	1454	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.170000	0.825871	
mm_83129.1	chr9	40430862	40431062	-	1	NA	NA	NA	24802	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.010000	0.497512	
mm_158560.1	chrX	150435386	150435586	-	1	NA	NA	NA	5419	NM_001164686	382245	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding	0.025000	0.542289	
mm_29875.1	chr3	130930679	130930879	-	1	NA	NA	NA	-179518	NM_010703	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.035000	0.497512	
mm_63405.1	chr7	127326228	127326428	+	1	NA	NA	NA	18986	NM_146202	233890	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0.025000	0.442786	
mm_13572.1	chr2	112284881	112285081	+	1	NA	NA	NA	293	NM_133648	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.030000	0.378109	
mm_126285.1	chr15	79229301	79229501	+	1	NA	NA	NA	19	NM_001045558	18693	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	0.095000	0.681592	
mm_90771.1	chr10	5823809	5824009	-	1	NA	NA	NA	34	NM_175374	108853	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	0.070000	0.597015	
mm_152798.1	chr19	21630694	21630894	-	1	NA	NA	NA	21997	NM_025423	66206	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0.015000	0.482587	
mm_93345.1	chr10	100444938	100445138	-	1	NA	NA	NA	42309	NM_001033332	237500	Mm.296805	NM_001033332	ENSMUSG00000036676	Tmtc3	9130014E20Rik|B130008E12Rik|mSmile	transmembrane and tetratricopeptide repeat containing 3	protein-coding	0.000000	0.303483	
mm_106305.1	chr11	118290094	118290294	-	1	NA	NA	NA	50	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.100000	0.641791	-49(GCCTCTTAAGGC,-,0.00),-48(CCTCTTAAGGCG,+,0.00)
mm_70030.1	chr7	142576456	142576656	-	1	NA	NA	NA	591	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.025000	0.537313	
mm_140448.1	chr17	88597584	88597784	+	1	NA	NA	NA	-28871	NM_029858	77057	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.045000	0.701493	
mm_34543.1	chr4	149518198	149518398	+	1	NA	NA	NA	57	NM_023465	67087	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0.160000	0.805970	
mm_31988.1	chr4	89294783	89294983	+	1	NA	NA	NA	-264	NM_009877	12578	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin-dependent kinase inhibitor 2A	protein-coding	0.160000	0.701493	
mm_164905.1	chr18	68629208	68629408	+	1	NA	NA	NA	-110092	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0.015000	0.422886	
mm_66080.1	chr7	30956629	30956829	-	1	NA	NA	NA	74	NM_011680	22282	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0.130000	0.820896	
mm_50491.1	chr6	48988753	48988953	+	1	NA	NA	NA	1992	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.025000	0.517413	
mm_37618.1	chr4	127061005	127061205	-	1	NA	NA	NA	27	NM_026670	68310	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	0.100000	0.681592	
mm_90157.1	chr10	118714345	118714545	+	1	NA	NA	NA	154458	NM_001014390	69181	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.040000	0.577114	17(CCTCTAAGAGTC,+,0.00)
mm_12757.1	chr2	79255360	79255560	+	1	NA	NA	NA	34	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.060000	0.686567	
mm_40357.1	chr5	47990692	47990892	+	1	NA	NA	NA	7637	NM_001291228	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding	0.000000	0.243781	2(ATTTTTAAAGCC,+,0.00)
mm_108410.1	chr12	81859803	81860003	+	1	NA	NA	NA	-127	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	0.100000	0.761194	
mm_116810.1	chr13	54378827	54379027	-	1	NA	NA	NA	7578	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.055000	0.636816	
mm_17544.1	chr2	29846209	29846409	-	1	NA	NA	NA	-582	NR_029838	723904		NR_029838	ENSMUSG00000065485	Mir219a-2	Mir219-2|Mirn219-2|mir-219a-2|mmu-mir-219a-2	microRNA 219a-2	ncRNA	0.100000	0.696517	
mm_134142.1	chr16	10784596	10784796	-	1	NA	NA	NA	840	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.130000	0.726368	
mm_139017.1	chr17	45758154	45758354	+	1	NA	NA	NA	-24410	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0.020000	0.452736	-33(TGGTCTAAAAGG,-,0.00)
mm_65124.1	chr7	19458579	19458779	-	1	NA	NA	NA	-185	NM_172279	232944	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.100000	0.751244	
mm_15594.1	chr2	160645789	160645989	+	1	NA	NA	NA	-8	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.100000	0.592040	-6(CCTCTAAGAGAC,+,0.00),58(CCATTTAAAAGC,+,0.00),58(CCATTTAAAAGC,-,0.00)
mm_40486.1	chr5	56050325	56050525	+	1	NA	NA	NA	1667494	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	0.020000	0.522388	
mm_116870.1	chr13	55018438	55018638	-	1	NA	NA	NA	2281	NM_001206390	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.005000	0.502488	
mm_132002.1	chr16	25523291	25523491	+	1	NA	NA	NA	-160374	NM_001127259	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.005000	0.328358	
mm_141094.1	chr17	25985684	25985884	-	1	NA	NA	NA	90	NM_001347334	50817	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	0.125000	0.701493	
mm_52824.1	chr6	121356801	121357001	+	1	NA	NA	NA	10204	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.020000	0.557214	
mm_102641.1	chr11	62648386	62648586	-	1	NA	NA	NA	37	NM_198861	192976	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	0.175000	0.830846	
mm_171594.1	chr4	147698354	147698554	-	1	NA	NA	NA	4177	NM_001127188	100503584	Mm.276881	NM_001127188	ENSMUSG00000062518	Zfp534	Gm13159|OTTMUSG00000010681	zinc finger protein 534	protein-coding	0.005000	0.522388	
mm_125487.1	chr15	54745524	54745724	+	1	NA	NA	NA	-304	NM_010930	18133	Mm.5167	NM_010930	ENSMUSG00000037362	Nov	C130088N23Rik|CCN3	nephroblastoma overexpressed gene	protein-coding	0.020000	0.582090	
mm_155091.1	chrX	48146412	48146612	+	1	NA	NA	NA	76	NM_028773	74131	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	0.015000	0.582090	
mm_63698.1	chr7	130645365	130645565	+	1	NA	NA	NA	-47091	NM_001347637	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.020000	0.457711	25(CCACATATAGCC,+,0.00)
mm_28051.1	chr3	84041891	84042091	-	1	NA	NA	NA	-1830	NM_172681	229473	Mm.28838	NM_172681	ENSMUSG00000033767	D930015E06Rik	Kiaa0922|mKIAA0922	RIKEN cDNA D930015E06 gene	protein-coding	0.030000	0.492537	
mm_105268.1	chr11	102365040	102365240	-	1	NA	NA	NA	141	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.025000	0.681592	
mm_73996.1	chr8	120736396	120736596	+	1	NA	NA	NA	138	NM_008320	15900	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.050000	0.562189	85(CCCTTTAAAATC,+,0.00)
mm_147158.1	chr18	36679384	36679584	-	1	NA	NA	NA	-118	NM_146085	225372	Mm.89673	NM_146085	ENSMUSG00000006050	Apbb3	Fe65l2|Rirl2|TR2S	amyloid beta (A4) precursor protein-binding, family B, member 3	protein-coding	0.070000	0.601990	18(TGGCATTTAAGG,-,0.00),20(GCATTTAAGGCA,+,0.00)
mm_35595.1	chr4	43025677	43025877	-	1	NA	NA	NA	-3	NM_020035	56703	Mm.143738	NM_020035	ENSMUSG00000028454	Pigo	PIG-O	phosphatidylinositol glycan anchor biosynthesis, class O	protein-coding	0.050000	0.621891	
mm_80917.1	chr9	100846960	100847160	+	1	NA	NA	NA	187824	NM_001311149	66904	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0.000000	0.303483	
mm_62104.1	chr7	96279094	96279294	+	1	NA	NA	NA	-26473	NR_105818	102465210		NR_105818	ENSMUSG00000099030	Mir6394	Gm27929|mmu-mir-6394	microRNA 6394	ncRNA	0.005000	0.388060	
mm_87478.1	chr10	51492804	51493004	+	1	NA	NA	NA	2006	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.402985	
mm_147292.1	chr18	39490583	39490783	-	1	NA	NA	NA	-3438	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.140000	0.766169	
mm_38287.1	chr4	136890260	136890460	-	1	NA	NA	NA	2554	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.040000	0.572139	
mm_70659.1	chr8	14777678	14777878	+	1	NA	NA	NA	-110758	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.025000	0.522388	
mm_165254.1	chr2	72479940	72480140	+	1	NA	NA	NA	3821	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.040000	0.552239	
mm_64713.1	chr7	4630379	4630579	-	1	NA	NA	NA	3	NM_023440	68255	Mm.389784	NM_023440	ENSMUSG00000045282	Tmem86b	C330014O21Rik	transmembrane protein 86B	protein-coding	0.005000	0.552239	
mm_17768.1	chr2	32789403	32789603	-	1	NA	NA	NA	-5098	NM_025619	227736	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	0.045000	0.572139	
mm_167988.1	chrX	170009515	170009715	+	1	NA	NA	NA	-30698	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.155000	0.800995	
mm_68589.1	chr7	116034304	116034504	-	1	NA	NA	NA	-3357	NM_001025560	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.065000	0.611940	
mm_49625.1	chr6	30804005	30804205	+	1	NA	NA	NA	62806	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.487562	
mm_17054.1	chr2	21024063	21024263	-	1	NA	NA	NA	55289	NR_033225	433408	Mm.386941	NR_033225		Gm13375	OTTMUSG00000011664	predicted gene 13375	ncRNA	0.005000	0.378109	-38(CCATATATGCCC,+,0.00)
mm_13094.1	chr2	91256063	91256263	+	1	NA	NA	NA	-2	NM_001289677	80708	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	0.035000	0.467662	
mm_108455.1	chr12	82617009	82617209	+	1	NA	NA	NA	184	NM_015812	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0.110000	0.736318	
mm_12561.1	chr2	72545084	72545284	+	1	NA	NA	NA	68965	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.005000	0.402985	
mm_129748.1	chr15	82336915	82337115	-	1	NA	NA	NA	1811	NM_008669	17939	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	0.020000	0.522388	-19(TTTTTTATAGCC,+,0.00),79(GGCTCTTTATGG,-,0.00),81(CTCTTTATGGAG,+,0.00)
mm_137466.1	chr17	26655837	26656037	+	1	NA	NA	NA	-20459	NM_025272	11974	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.005000	0.517413	80(GACCATATAAGG,-,0.00),82(CCATATAAGGCA,+,0.00)
mm_139262.1	chr17	47761424	47761624	+	1	NA	NA	NA	23593	NM_001161723	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.005000	0.472637	
mm_107170.1	chr12	24708648	24708848	+	1	NA	NA	NA	494	NM_009104	20135	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0.055000	0.527363	
mm_61308.1	chr7	67952723	67952923	+	1	NA	NA	NA	566	NM_010513	16001	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.060000	0.457711	
mm_40377.1	chr5	52368358	52368558	+	1	NA	NA	NA	4654	NM_011435	20657	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	0.120000	0.706468	
mm_170791.1	chr2	175141921	175142121	-	1	NA	NA	NA	64896	NM_001164689	626832	Mm.441314	NM_001164689	ENSMUSG00000078887	Gm6710	1600017I02Rik|2310011F05Rik|2900089K14Rik|3100002L24Rik|WF-4	predicted gene 6710	protein-coding	0.010000	0.492537	
mm_66612.1	chr7	45466469	45466669	-	1	NA	NA	NA	329	NM_007527	12028	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.080000	0.701493	
mm_34023.1	chr4	138041671	138041871	+	1	NA	NA	NA	48315	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.030000	0.497512	
mm_107053.1	chr12	16653439	16653639	+	1	NA	NA	NA	69	NM_008747	18217	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT2R|NTRL	neurotensin receptor 2	protein-coding	0.055000	0.676617	
mm_88068.1	chr10	67703270	67703470	+	1	NA	NA	NA	-154415	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.005000	0.472637	
mm_89589.1	chr10	95892420	95892620	+	1	NA	NA	NA	-48143	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.010000	0.447761	
mm_117434.1	chr13	74617175	74617375	-	1	NA	NA	NA	-22597	NM_030711	80898	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0.025000	0.497512	
mm_132802.1	chr16	45158284	45158484	+	1	NA	NA	NA	289	NM_028756	74102	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	0.070000	0.567164	
mm_111361.1	chr12	87048645	87048845	-	1	NA	NA	NA	22181	NM_172583	217733	Mm.110032	NM_172583	ENSMUSG00000034145	Tmem63c	4932420N09|9330187M14Rik	transmembrane protein 63c	protein-coding	0.020000	0.547264	
mm_20466.1	chr2	129368046	129368246	-	1	NA	NA	NA	-1756	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.010000	0.537313	
mm_4469.1	chr1	173419126	173419326	+	1	NA	NA	NA	-1378	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.000000	0.432836	
mm_150208.1	chr19	32799957	32800157	+	1	NA	NA	NA	42480	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.010000	0.407960	-18(ATTTTTAAAGGC,+,0.00)
mm_115862.1	chr13	21440957	21441157	-	1	NA	NA	NA	-4	NM_001162920	319207	Mm.434384	NM_001012311	ENSMUSG00000055313	Pgbd1	4921509E05Rik	piggyBac transposable element derived 1	protein-coding	0.065000	0.631841	
mm_54282.1	chr6	29212362	29212562	-	1	NA	NA	NA	-165	NM_011829	23917	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine 5'-phosphate dehydrogenase 1	protein-coding	0.080000	0.666667	
mm_152062.1	chr19	6531918	6532118	-	1	NA	NA	NA	11052	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.070000	0.631841	
mm_165747.1	chr3	107760170	107760370	-	1	NA	NA	NA	199	NM_001113530	12977	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0.055000	0.601990	-5(CCGCTTAAAAGG,-,0.00),-3(GCTTAAAAGGCT,+,0.00)
mm_172733.1	chr8	78139858	78140058	-	1	NA	NA	NA	-73384	NM_183096	73301	Mm.61243	NM_183096	ENSMUSG00000037101	Ttc29	1700031F13Rik	tetratricopeptide repeat domain 29	protein-coding	0.045000	0.537313	
mm_170720.1	chr2	14739081	14739281	+	1	NA	NA	NA	18539	NR_028497	625342	Mm.484784	NR_028497		Gm13315	OTTMUSG00000011384	lactate dehydrogenase A pseudogene	pseudo	0.035000	0.527363	
mm_28052.1	chr3	84155645	84155845	-	1	NA	NA	NA	41	NM_029797	76915	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	0.090000	0.701493	
mm_128603.1	chr15	58324031	58324231	-	1	NA	NA	NA	38	NM_177755	268807	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	0.025000	0.472637	
mm_113068.1	chr13	23751105	23751305	+	1	NA	NA	NA	117	NM_175660	319172	Mm.423402	NM_175660	ENSMUSG00000061615	Hist1h2ab	H2A.1|H2a-53	histone cluster 1, H2ab	protein-coding	0.110000	0.666667	
mm_78319.1	chr9	24368047	24368247	+	1	NA	NA	NA	134993	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.000000	0.363184	
mm_52036.1	chr6	96140691	96140891	+	1	NA	NA	NA	25414	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo	0.000000	0.353234	
mm_17387.1	chr2	27071988	27072188	-	1	NA	NA	NA	73	NM_025376	66139	Mm.330087	NM_025376	ENSMUSG00000009214	Tmem8c	1110002H13Rik|AI131587	transmembrane protein 8C	protein-coding	0.005000	0.587065	
mm_48024.1	chr5	136244787	136244987	-	1	NA	NA	NA	53	NM_001302939	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.110000	0.746269	
mm_138851.1	chr17	40811086	40811286	+	1	NA	NA	NA	37	NM_011269	19743	Mm.12961	NM_011269	ENSMUSG00000023926	Rhag	CD241|Rh50|Rh50A	Rhesus blood group-associated A glycoprotein	protein-coding	0.000000	0.432836	
mm_142817.1	chr17	51746868	51747068	-	1	NA	NA	NA	65086	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.005000	0.328358	
mm_132197.1	chr16	32496178	32496378	+	1	NA	NA	NA	-3	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.010000	0.452736	
mm_67802.1	chr7	98111338	98111538	-	1	NA	NA	NA	-2190	NM_001256083	17921	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.070000	0.666667	
mm_50405.1	chr6	48728069	48728269	+	1	NA	NA	NA	9548	NM_146167	231932	Mm.30479	NM_146167	ENSMUSG00000043931	Gimap7	IAN7|Ian3	GTPase, IMAP family member 7	protein-coding	0.010000	0.492537	
mm_133372.1	chr16	84709288	84709488	+	1	NA	NA	NA	-3635	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.000000	0.283582	28(GCTTATATAAAG,+,0.00),28(GCTTATATAAAG,-,0.00)
mm_19898.1	chr2	114052711	114052911	-	1	NA	NA	NA	64	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.035000	0.646766	
mm_26917.1	chr3	20242063	20242263	-	1	NA	NA	NA	18	NM_007753	12873	Mm.1135	NM_007753	ENSMUSG00000001865	Cpa3	MC-CPA	carboxypeptidase A3, mast cell	protein-coding	0.015000	0.427861	
mm_87227.1	chr10	40477604	40477804	+	1	NA	NA	NA	-92658	NM_027572	70840	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.020000	0.532338	-13(CTCCTTAAAAGA,-,0.00)
mm_93639.1	chr10	117288315	117288515	-	1	NA	NA	NA	4453	NM_013590	17110	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0.005000	0.507463	
mm_83389.1	chr9	44604650	44604850	-	1	NA	NA	NA	-142	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.200000	0.850746	
mm_1899.1	chr1	85709505	85709705	+	1	NA	NA	NA	27001	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.010000	0.487562	
mm_167150.1	chr7	131198971	131199171	+	1	NA	NA	NA	24669	NM_175166	71395	Mm.118845	NM_175166	ENSMUSG00000006204	5430419D17Rik	-	RIKEN cDNA 5430419D17 gene	protein-coding	0.010000	0.497512	
mm_4356.1	chr1	171917415	171917615	+	1	NA	NA	NA	-22	NM_030710	30925	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	0.010000	0.462687	
mm_8816.1	chr1	161979603	161979803	-	1	NA	NA	NA	-67	NM_001204904	75368	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	0.005000	0.457711	
mm_95303.1	chr11	46124907	46125107	+	1	NA	NA	NA	-2897	NM_001311209	11492	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.005000	0.462687	
mm_39752.1	chr5	29735631	29735831	+	1	NA	NA	NA	-167	NM_001037940	23950	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0.055000	0.587065	
mm_96379.1	chr11	67242732	67242932	+	1	NA	NA	NA	5020	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.020000	0.447761	
mm_66487.1	chr7	45027849	45028049	-	1	NA	NA	NA	9942	NM_009101	20130	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.020000	0.517413	21(CCTTTTCTACAG,+,0.00)
mm_51558.1	chr6	83351157	83351357	+	1	NA	NA	NA	1773	NM_175277	78653	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0.045000	0.597015	
mm_125065.1	chr15	25940921	25941121	+	1	NA	NA	NA	195	NM_025459	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.025000	0.527363	
mm_93612.1	chr10	117238536	117238736	-	1	NA	NA	NA	45	NM_029906	77397	Mm.118350	NM_029906	ENSMUSG00000020177	9530003J23Rik	Lyzf1	RIKEN cDNA 9530003J23 gene	protein-coding	0.025000	0.507463	-1(GCTTAAATACTG,+,0.00)
mm_42104.1	chr5	110514808	110515008	+	1	NA	NA	NA	-15	NR_102290	231603	Mm.22836	NM_173766	ENSMUSG00000048215	A630023P12Rik	-	RIKEN cDNA A630023P12 gene	ncRNA	0.010000	0.502488	
mm_84343.1	chr9	64214536	64214736	-	1	NA	NA	NA	-20565	NM_033607	93841	Mm.390180	NM_033607	ENSMUSG00000035337	Uchl4	-	ubiquitin carboxyl-terminal esterase L4	protein-coding	0.060000	0.666667	
mm_41703.1	chr5	101659111	101659311	+	1	NA	NA	NA	5500	NM_144955	18096	Mm.193072	NM_144955	ENSMUSG00000035187	Nkx6-1	NKX6A|Nkx6.1	NK6 homeobox 1	protein-coding	0.070000	0.517413	
mm_160674.1	chr10	7691202	7691402	+	1	NA	NA	NA	10093	NM_010690	16798	Mm.34083	NM_010690	ENSMUSG00000040021	Lats1	AW208599	large tumor suppressor	protein-coding	0.005000	0.417910	
mm_165945.1	chr4	82373830	82374030	-	1	NA	NA	NA	131849	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.015000	0.482587	
mm_81201.1	chr9	107563192	107563392	+	1	NA	NA	NA	37	NM_019742	80385	Mm.21739	NM_019742	ENSMUSG00000010054	Tusc2	1190001E22Rik|AA407686|Fus1|Lgcc|PAP|Pdap2	tumor suppressor candidate 2	protein-coding	0.125000	0.721393	
mm_40425.1	chr5	53532181	53532381	+	1	NA	NA	NA	-23498	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.030000	0.527363	
mm_101084.1	chr11	11808845	11809045	-	1	NA	NA	NA	17	NM_021891	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.145000	0.711443	
mm_133838.1	chr16	96156578	96156778	+	1	NA	NA	NA	11259	NM_207301	71446	Mm.255063	NM_207301	ENSMUSG00000023147	Wrb	5530402J05Rik|C030018G21Rik|Chd5	tryptophan rich basic protein	protein-coding	0.000000	0.388060	
mm_102684.1	chr11	65269893	65270093	-	1	NA	NA	NA	-4	NM_146386	214384	Mm.32257	NM_145136	ENSMUSG00000020542	Myocd	BSAC2A|Srfcp	myocardin	protein-coding	0.050000	0.582090	-32(CTTCATAAAGGC,+,0.00)
mm_44971.1	chr5	36807764	36807964	-	1	NA	NA	NA	-11110	NM_026242	67568	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0.020000	0.592040	
mm_155061.1	chrX	42502106	42502306	+	1	NA	NA	NA	-359	NM_011364	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	0.015000	0.432836	-21(GCTTTTATGCTT,+,0.00)
mm_57391.1	chr6	124839964	124840164	-	1	NA	NA	NA	211	NM_013530	14695	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0.010000	0.641791	
mm_22028.1	chr2	168050295	168050495	-	1	NA	NA	NA	-30609	NM_021409	58220	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0.100000	0.691542	
mm_80752.1	chr9	95392705	95392905	+	1	NA	NA	NA	14465	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.005000	0.437811	
mm_132867.1	chr16	48611603	48611803	+	1	NA	NA	NA	160253	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.005000	0.472637	
mm_167065.1	chr7	97032729	97032929	+	1	NA	NA	NA	-48922	NM_001162477	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.010000	0.343284	
mm_42433.1	chr5	115404459	115404659	+	1	NA	NA	NA	-25126	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.050000	0.572139	83(GCTTTAATGCCC,+,0.00)
mm_166729.1	chr6	122513478	122513678	+	1	NA	NA	NA	-6	NM_001347434	50530	Mm.41931	NM_015776	ENSMUSG00000030116	Mfap5	MAGP-2|MFAP-5	microfibrillar associated protein 5	protein-coding	0.005000	0.517413	
mm_118534.1	chr14	16173588	16173788	+	1	NA	NA	NA	-75626	NM_021504	59007	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	0.005000	0.363184	
mm_64677.1	chr7	4501619	4501819	-	1	NA	NA	NA	-39	NM_029834	232807	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.140000	0.706468	
mm_85857.1	chr9	110743543	110743743	-	1	NA	NA	NA	43	NM_001083935	19228	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.105000	0.800995	
mm_42551.1	chr5	116438618	116438818	+	1	NA	NA	NA	-4	NR_015595	76798	Mm.444322	NR_015595	ENSMUSG00000086219	Srrm4os	2410137F16Rik	serine/arginine repetitive matrix 4, opposite strand	ncRNA	0.005000	0.527363	
mm_118759.1	chr14	22394153	22394353	+	1	NA	NA	NA	148545	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.000000	0.467662	-96(CCACTTATAGCC,+,0.00)
mm_67246.1	chr7	75309094	75309294	-	1	NA	NA	NA	68	NM_153579	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.030000	0.517413	
mm_42514.1	chr5	115544026	115544226	+	1	NA	NA	NA	-15341	NM_007475	11837	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.030000	0.616915	
mm_166118.1	chr4	150799501	150799701	-	1	NA	NA	NA	55348	NR_040649	73348	Mm.396218	NR_040649	ENSMUSG00000078492	1700045H11Rik	-	RIKEN cDNA 1700045H11 gene	ncRNA	0.035000	0.522388	
mm_20606.1	chr2	131491599	131491799	-	1	NA	NA	NA	-163	NM_001177834	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.070000	0.631841	
mm_7418.1	chr1	119504666	119504866	-	1	NA	NA	NA	16	NM_022327	64143	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0.070000	0.606965	
mm_65227.1	chr7	19715168	19715368	-	1	NA	NA	NA	161	NM_001109748	53333	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40 homolog (yeast)	protein-coding	0.105000	0.721393	
mm_52693.1	chr6	118348321	118348521	+	1	NA	NA	NA	-39702	NR_110507	102632423	Mm.261755	NR_110507	ENSMUSG00000107933	Gm30498	-	predicted gene, 30498	ncRNA	0.010000	0.562189	
mm_163984.1	chr14	60379337	60379537	-	1	NA	NA	NA	1151	NM_001164705	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.025000	0.542289	-45(CTTTTTAGAGAG,+,0.00)
mm_111459.1	chr12	98419534	98419734	-	1	NA	NA	NA	-104210	NR_136759	105245437	Mm.446375	NR_136759		Gm40893	-	predicted gene, 40893	ncRNA	0.010000	0.293532	
mm_140498.1	chr17	3663465	3663665	-	1	NA	NA	NA	32696	NM_198958	224480	Mm.328756	NM_198958	ENSMUSG00000023802	Nox3	GP91-3|het|nmf250	NADPH oxidase 3	protein-coding	0.000000	0.353234	
mm_53883.1	chr6	3345883	3346083	-	1	NA	NA	NA	53588	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.000000	0.373134	87(TCCTTTTAAAAG,-,0.00),88(CCTTTTAAAAGA,+,0.00),88(CCTTTTAAAAGA,-,0.00),89(CTTTTAAAAGAT,+,0.00)
mm_30900.1	chr4	32335932	32336132	+	1	NA	NA	NA	-81403	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.015000	0.437811	
mm_131506.1	chr16	17451908	17452108	+	1	NA	NA	NA	23	NM_007764	12929	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	0.095000	0.656716	
mm_142973.1	chr17	56133837	56134037	-	1	NA	NA	NA	-85	NM_013662	20359	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0.020000	0.567164	
mm_115389.1	chr13	113211223	113211423	+	1	NA	NA	NA	1664	NM_023612	71690	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.020000	0.323383	
mm_19647.1	chr2	102865283	102865483	-	1	NA	NA	NA	36282	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.025000	0.502488	
mm_71461.1	chr8	46530291	46530491	+	1	NA	NA	NA	-21678	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.025000	0.512438	
mm_91929.1	chr10	60358158	60358358	-	1	NA	NA	NA	11407	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.020000	0.577114	
mm_42608.1	chr5	117841835	117842035	+	1	NA	NA	NA	-24904	NM_008712	18125	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.075000	0.597015	
mm_164153.1	chr15	63998037	63998237	-	1	NA	NA	NA	62311	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.125000	0.716418	
mm_100549.1	chr11	120713889	120714089	+	1	NA	NA	NA	36	NM_153545	217366	Mm.347545	NM_153545	ENSMUSG00000025145	Lrrc45	BC023296	leucine rich repeat containing 45	protein-coding	0.075000	0.621891	
mm_127971.1	chr15	12106807	12107007	-	1	NA	NA	NA	-10944	NM_011767	22763	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.015000	0.507463	
mm_73766.1	chr8	115708417	115708617	+	1	NA	NA	NA	-1623	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.040000	0.512438	
mm_15356.1	chr2	156312355	156312555	+	1	NA	NA	NA	-18	NM_027585	70873	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	0.110000	0.686567	
mm_127235.1	chr15	99408441	99408641	+	1	NA	NA	NA	15322	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.010000	0.457711	
mm_78862.1	chr9	44398253	44398453	+	1	NA	NA	NA	177	NM_008063	14385	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0.010000	0.532338	-34(GGCTATAAAGAG,-,0.00)
mm_16303.1	chr2	174289560	174289760	+	1	NA	NA	NA	5340	NM_022000	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.020000	0.467662	
mm_142297.1	chr17	40934371	40934571	-	1	NA	NA	NA	80	NM_031863	83815	Mm.9870	NM_031863	ENSMUSG00000023919	Cenpq	2610528M18Rik	centromere protein Q	protein-coding	0.075000	0.512438	
mm_155608.1	chrX	83043123	83043323	+	1	NA	NA	NA	94353	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.010000	0.472637	
mm_50873.1	chr6	55452161	55452361	+	1	NA	NA	NA	283	NM_007407	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	0.130000	0.726368	
mm_56838.1	chr6	117179738	117179938	-	1	NA	NA	NA	11303	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.010000	0.447761	
mm_52294.1	chr6	108697714	108697914	+	1	NA	NA	NA	-36880	NR_104577	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.015000	0.487562	
mm_152989.1	chr19	29648248	29648448	-	1	NA	NA	NA	72	NM_001081213	226090	Mm.267131	NM_146098	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	0.130000	0.736318	
mm_102739.1	chr11	67251804	67252004	-	1	NA	NA	NA	14092	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.045000	0.512438	
mm_114361.1	chr13	61712887	61713087	+	1	NA	NA	NA	-58593	NR_028430	432812	Mm.317358	NR_028430		BC052688	-	cDNA sequence BC052688	pseudo	0.040000	0.537313	
mm_166950.1	chr7	43980221	43980421	+	1	NA	NA	NA	4260	NM_010116	13648	Mm.440884	NM_010116	ENSMUSG00000059042	Klk1b9	EGF-BP C|Egfbp-3|Egfbp3|KAL|Klk9|kallikrein|mGk-9	kallikrein 1-related peptidase b9	protein-coding	0.010000	0.437811	
mm_121344.1	chr14	115994845	115995045	+	1	NA	NA	NA	-585393	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0.010000	0.323383	
mm_154437.1	chrM	778	978	-	1	NA	NA	NA	NA	NA									0.020000	0.333333	
mm_41974.1	chr5	107431450	107431650	+	1	NA	NA	NA	1	NM_027599	70902	Mm.55870	NM_027599	ENSMUSG00000033794	Lpcat2b	4921521K07Rik|Aytl1b	lysophosphatidylcholine acyltransferase 2B	protein-coding	0.010000	0.383085	
mm_90306.1	chr10	126978851	126979051	+	1	NA	NA	NA	234	NM_001113470	52468	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0.080000	0.696517	
mm_3045.1	chr1	134040325	134040525	+	1	NA	NA	NA	2910	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.020000	0.582090	
mm_100226.1	chr11	117115172	117115372	+	1	NA	NA	NA	100	NM_001166506	74136	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.150000	0.736318	
mm_40386.1	chr5	52719755	52719955	+	1	NA	NA	NA	-21719	NM_028744	67073	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	0.010000	0.492537	
mm_4434.1	chr1	172506626	172506826	+	1	NA	NA	NA	6480	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.020000	0.522388	
mm_80608.1	chr9	86757770	86757970	+	1	NA	NA	NA	14237	NM_178738	244954	Mm.257629	NM_178738	ENSMUSG00000033491	Prss35	6030424L22Rik|P3D9	protease, serine 35	protein-coding	0.010000	0.457711	
mm_72052.1	chr8	71367418	71367618	+	1	NA	NA	NA	301	NM_025917	67023	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.060000	0.626866	
mm_161717.1	chr17	25944827	25945027	-	1	NA	NA	NA	4	NM_001039038	621239	Mm.381070	NM_001039038	ENSMUSG00000090113	Nhlrc4	F430201B04Rik	NHL repeat containing 4	protein-coding	0.010000	0.562189	
mm_170320.1	chr18	40307992	40308192	-	1	NA	NA	NA	49731	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.010000	0.368159	
mm_16800.1	chr2	10117344	10117544	-	1	NA	NA	NA	13239	NM_010582	16425	Mm.182043	NM_010582	ENSMUSG00000037254	Itih2	AI747202|Intin2|Itih-2	inter-alpha trypsin inhibitor, heavy chain 2	protein-coding	0.010000	0.412935	
mm_131217.1	chr16	8835867	8836067	+	1	NA	NA	NA	5867	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.000000	0.373134	-78(CCTTTTATGCCA,+,0.00)
mm_127075.1	chr15	97383865	97384065	+	1	NA	NA	NA	-136678	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.025000	0.592040	
mm_143050.1	chr17	56906126	56906326	-	1	NA	NA	NA	29162	NM_022328	64144	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0.005000	0.522388	
mm_118398.1	chr13	119389184	119389384	-	1	NA	NA	NA	19727	NM_008710	18115	Mm.132584	NM_008710	ENSMUSG00000025453	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.010000	0.383085	
mm_170890.1	chr2	24985848	24986048	+	1	NA	NA	NA	9915	NM_146251	241274	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0.025000	0.447761	-19(GCCTTTAAGAGA,-,0.00),-18(CCTTTAAGAGAA,+,0.00)
mm_145711.1	chr18	62937115	62937315	+	1	NA	NA	NA	14888	NM_133237	494504	Mm.391102	NM_133237	ENSMUSG00000071847	Apcdd1	AB023957|AU041258|Drapc1|EIG180	adenomatosis polyposis coli down-regulated 1	protein-coding	0.035000	0.582090	
mm_167657.1	chr9	70768617	70768817	+	1	NA	NA	NA	89735	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.005000	0.368159	
mm_76156.1	chr8	82357301	82357501	-	1	NA	NA	NA	45185	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.010000	0.412935	
mm_87326.1	chr10	42861483	42861683	+	1	NA	NA	NA	1071	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.015000	0.502488	
mm_163956.1	chr14	54711826	54712026	-	1	NA	NA	NA	248	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.065000	0.706468	
mm_38013.1	chr4	133753765	133753965	-	1	NA	NA	NA	-254	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.105000	0.796020	
mm_19955.1	chr2	117342721	117342921	-	1	NA	NA	NA	56	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.140000	0.736318	
mm_3533.1	chr1	150319328	150319528	+	1	NA	NA	NA	11	NM_001159730	20028	Mm.440883	NM_024458	ENSMUSG00000006007	Pdc	Rpr-1|Rpr1	phosducin	protein-coding	0.005000	0.393035	
mm_99835.1	chr11	109011745	109011945	+	1	NA	NA	NA	91496	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.095000	0.651741	
mm_51286.1	chr6	72304508	72304708	+	1	NA	NA	NA	-2	NM_001282071	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.010000	0.592040	-31(TACTATAAGAGC,-,0.00)
mm_3613.1	chr1	152229758	152229958	+	1	NA	NA	NA	-139538	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik|ENSMUSG00000073540	RIKEN cDNA 1700025G04 gene	protein-coding	0.010000	0.472637	
mm_60188.1	chr7	43351295	43351495	+	1	NA	NA	NA	54	NM_145581	233186	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0.005000	0.482587	
mm_137318.1	chr17	24891260	24891460	+	1	NA	NA	NA	3727	NM_001163102	193838	Mm.440199	NM_001163102	ENSMUSG00000073436	Eme2	2810013J18Rik	essential meiotic structure-specific endonuclease subunit 2	protein-coding	0.030000	0.562189	
mm_142332.1	chr17	43504230	43504430	-	1	NA	NA	NA	-1557	NM_008585	17287	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	0.005000	0.422886	
mm_36674.1	chr4	96348478	96348678	-	1	NA	NA	NA	102	NM_001004141	100066	Mm.26915	NM_001004141	ENSMUSG00000066097	Cyp2j11	AI314783|Cyp2j11-ps	cytochrome P450, family 2, subfamily j, polypeptide 11	protein-coding	0.005000	0.512438	
mm_104281.1	chr11	89777587	89777787	-	1	NA	NA	NA	-80751	NM_001327810	382543	Mm.60997	NM_172534	ENSMUSG00000047773	Ankfn1	4932411E22Rik|Gm1175|nmf9	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding	0.035000	0.522388	
mm_67235.1	chr7	75308209	75308409	-	1	NA	NA	NA	77	NM_001109753	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.030000	0.477612	
mm_37038.1	chr4	115492021	115492221	-	1	NA	NA	NA	4020	NM_007822	13119	Mm.250901	NM_007822	ENSMUSG00000028715	Cyp4a14	AI314743	cytochrome P450, family 4, subfamily a, polypeptide 14	protein-coding	0.025000	0.467662	-46(CCTTTTATAAGT,+,0.00)
mm_12333.1	chr2	69647142	69647342	+	1	NA	NA	NA	-13	NM_028284	72569	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	0.120000	0.646766	
mm_42509.1	chr5	115519615	115519815	+	1	NA	NA	NA	13039	NM_133915	19303	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0.000000	0.393035	
mm_96562.1	chr11	69020807	69021007	+	1	NA	NA	NA	4996	NM_001013256	68964	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	0.000000	0.427861	31(GTTTATTTAAGG,-,0.00)
mm_6715.1	chr1	82291507	82291707	-	1	NA	NA	NA	-168	NM_010570	16367	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.110000	0.736318	
mm_2051.1	chr1	87404854	87405054	+	1	NA	NA	NA	-10225	NM_001110227	100040591	Mm.443539	NM_001110227	ENSMUSG00000079436	Kcnj13	-	potassium inwardly-rectifying channel, subfamily J, member 13	protein-coding	0.005000	0.422886	
mm_126791.1	chr15	86333678	86333878	+	1	NA	NA	NA	119319	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.005000	0.577114	
mm_134962.1	chr16	31429569	31429769	-	1	NA	NA	NA	916	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.085000	0.696517	
mm_97526.1	chr11	78501766	78501966	+	1	NA	NA	NA	-1647	NM_008759	18292	Mm.134360	NM_008759	ENSMUSG00000001103	Sebox	OG9|Og9x	SEBOX homeobox	protein-coding	0.035000	0.507463	
mm_149581.1	chr19	15599154	15599354	+	1	NA	NA	NA	325368	NM_001205339	107272	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0.015000	0.422886	
mm_16675.1	chr2	6857905	6858105	-	1	NA	NA	NA	14030	NM_001347094	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.005000	0.293532	-14(TTTTATATAGGG,+,0.00),17(CCTTTTAGAACT,+,0.00)
mm_127892.1	chr15	9155269	9155469	-	1	NA	NA	NA	56	NM_001285980	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.015000	0.507463	-88(CTGTTTAAAAGG,-,0.00)
mm_99324.1	chr11	101442606	101442806	+	1	NA	NA	NA	461	NM_011289	19942	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	0.090000	0.611940	
mm_3715.1	chr1	153909135	153909335	+	1	NA	NA	NA	9306	NM_008131	14645	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.005000	0.383085	14(TTTTTTAAAAGC,-,0.00)
mm_72528.1	chr8	83982699	83982899	+	1	NA	NA	NA	5916	NM_001277898	18747	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0.010000	0.482587	
mm_11274.1	chr2	30061825	30062025	+	1	NA	NA	NA	-71	NM_023871	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.070000	0.681592	
mm_41219.1	chr5	88583497	88583697	+	1	NA	NA	NA	84	NM_027530	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.015000	0.393035	
mm_33007.1	chr4	120666519	120666719	+	1	NA	NA	NA	56	NM_019563	56222	Mm.272646	NM_019563	ENSMUSG00000070803	Cited4	MRG-2|Mrg2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding	0.060000	0.557214	
mm_27682.1	chr3	65958111	65958311	-	1	NA	NA	NA	14	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.150000	0.716418	
mm_112136.1	chr12	113000329	113000529	-	1	NA	NA	NA	192	NM_028193	72308	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	0.180000	0.800995	
mm_55657.1	chr6	72390434	72390634	-	1	NA	NA	NA	133	NM_016794	22320	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.045000	0.572139	
mm_48986.1	chr6	4755637	4755837	+	1	NA	NA	NA	8431	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.035000	0.477612	
mm_129418.1	chr15	78395785	78395985	-	1	NA	NA	NA	27	NM_028522	73376	Mm.73222	NM_028522	ENSMUSG00000062154	Tex33	1700061J05Rik|Ean57	testis expressed 33	protein-coding	0.010000	0.562189	
mm_159231.1	chr2	136532188	136532388	+	1	NA	NA	NA	-33	NM_175667	319196	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0.055000	0.646766	
mm_136434.1	chr16	94370879	94371079	-	1	NA	NA	NA	36	NM_019543	56176	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0.135000	0.736318	
mm_30388.1	chr3	152247131	152247331	-	1	NA	NA	NA	19089	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.020000	0.402985	-7(GTTTTTAAAGAG,+,0.00)
mm_96806.1	chr11	69990367	69990567	+	1	NA	NA	NA	-903	NM_019749	56486	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0.010000	0.452736	
mm_4955.1	chr1	191247824	191248024	+	1	NA	NA	NA	-64591	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.000000	0.497512	
mm_53846.1	chr6	148992618	148992818	+	1	NA	NA	NA	-46286	NM_019643	56306	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Tera	family with sequence similarity 60, member A	protein-coding	0.010000	0.412935	
mm_51597.1	chr6	84008283	84008483	+	1	NA	NA	NA	-215	NM_001077694	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.040000	0.547264	-89(CTTTTTAAAGCC,+,0.00)
mm_64841.1	chr7	13009726	13009926	-	1	NA	NA	NA	-26	NM_001024699	232879	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	0.070000	0.616915	
mm_23060.1	chr3	35855740	35855940	+	1	NA	NA	NA	74234	NM_033623	114893	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.015000	0.417910	
mm_112986.1	chr13	21362833	21363033	+	1	NA	NA	NA	113	NM_016684	22758	Mm.24124	NM_016684	ENSMUSG00000036721	Zscan12	2510038J07Rik|FPM315|Zfp96|mKIAA0426|zfp-96	zinc finger and SCAN domain containing 12	protein-coding	0.080000	0.696517	
mm_112959.1	chr13	21180069	21180269	+	1	NA	NA	NA	238	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.125000	0.761194	
mm_70499.1	chr8	12826104	12826304	+	1	NA	NA	NA	5715	NR_045775	100504249	Mm.441494	NR_045775	ENSMUSG00000084780	Gm15350	OTTMUSG00000020611	predicted gene 15350	ncRNA	0.015000	0.427861	-41(CACTATAAAAGA,-,0.00)
mm_68759.1	chr7	121520518	121520718	-	1	NA	NA	NA	69218	NR_102286	75793	Mm.23397	NR_102286		4933432K03Rik	1700001C18Rik|4930433G11Rik|AI428127	RIKEN cDNA 4933432K03 gene	ncRNA	0.020000	0.398010	
mm_19337.1	chr2	90580445	90580645	-	1	NA	NA	NA	102	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.155000	0.805970	
mm_43386.1	chr5	135732661	135732861	+	1	NA	NA	NA	3128	NR_106001	102466791		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.020000	0.517413	
mm_133640.1	chr16	91729319	91729519	+	1	NA	NA	NA	48	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.130000	0.741294	
mm_96003.1	chr11	59450035	59450235	+	1	NA	NA	NA	90	NM_001205068	194952	Mm.295954	NM_178659	ENSMUSG00000036819	Jmjd4	6430559I23	jumonji domain containing 4	protein-coding	0.080000	0.641791	
mm_72138.1	chr8	71950992	71951192	+	1	NA	NA	NA	26	NM_001164581	234413	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding	0.100000	0.636816	
mm_63989.1	chr7	140096626	140096826	+	1	NA	NA	NA	3330	NM_009475	22264	Mm.439707	NM_009475	ENSMUSG00000025467	Prap1	Upa	proline-rich acidic protein 1	protein-coding	0.025000	0.562189	-26(CTCTTGAAAAGG,-,0.00)
mm_159921.1	chr6	54452876	54453076	+	1	NA	NA	NA	93	NM_001167861	330319	Mm.434326	NM_001167860	ENSMUSG00000086040	Wipf3	9030621G03|BQ952480	WAS/WASL interacting protein family, member 3	protein-coding	0.025000	0.626866	
mm_37986.1	chr4	133622973	133623173	-	1	NA	NA	NA	10356	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.005000	0.383085	
mm_19143.1	chr2	80447316	80447516	-	1	NA	NA	NA	-20	NM_011356	20378	Mm.427436	NM_011356	ENSMUSG00000027004	Frzb	Frp|Sfrp3|frezzled|fritz|frzb-1	frizzled-related protein	protein-coding	0.070000	0.661692	
mm_161542.1	chr15	103240354	103240554	+	1	NA	NA	NA	0	NR_002883	434858	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.080000	0.542289	-55(CGGGATAAAAGG,-,0.00)
mm_9649.1	chr1	177442983	177443183	-	1	NA	NA	NA	-1578	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.055000	0.587065	
mm_130281.1	chr15	96747619	96747819	-	1	NA	NA	NA	-48021	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.025000	0.467662	52(GTCTATTTGAGG,-,0.00)
mm_3153.1	chr1	135154532	135154732	+	1	NA	NA	NA	7798	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.020000	0.547264	
mm_46418.1	chr5	104113361	104113561	-	1	NA	NA	NA	627	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding	0.020000	0.502488	
mm_164863.1	chr18	54990569	54990769	-	1	NA	NA	NA	-489	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.045000	0.547264	-52(CCTTTTAGACGC,+,0.00)
mm_135232.1	chr16	36897038	36897238	-	1	NA	NA	NA	51	NR_040476	68306	Mm.399193	NR_040476	ENSMUSG00000084834	4930565N06Rik	4930428L02Rik	RIKEN cDNA 4930565N06 gene	ncRNA	0.020000	0.472637	
mm_19723.1	chr2	104441207	104441407	-	1	NA	NA	NA	-12367	NR_035432	100316678		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	0.005000	0.298507	
mm_109977.1	chr12	12940282	12940482	-	1	NA	NA	NA	1454	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.060000	0.562189	
mm_109940.1	chr12	11326103	11326303	-	1	NA	NA	NA	26316	NR_106136	102465775		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.005000	0.467662	33(ACCTATAAATGG,-,0.00)
mm_166936.1	chr7	36729345	36729545	+	1	NA	NA	NA	31327	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.010000	0.467662	
mm_15735.1	chr2	164237110	164237310	+	1	NA	NA	NA	1131	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.000000	0.393035	
mm_128880.1	chr15	73061129	73061329	-	1	NA	NA	NA	-25	NM_001164643	76510	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.030000	0.597015	-91(CCCTAGTAAAGG,-,0.00)
mm_36311.1	chr4	69758414	69758614	-	1	NA	NA	NA	651921	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.015000	0.447761	
mm_129939.1	chr15	84855978	84856178	-	1	NA	NA	NA	51	NM_001081166	271305	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.150000	0.761194	
mm_49302.1	chr6	17749046	17749246	+	1	NA	NA	NA	-24	NM_001083315	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.035000	0.517413	
mm_150691.1	chr19	42147320	42147520	+	1	NA	NA	NA	31	NM_183195	277010	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0.070000	0.656716	
mm_6209.1	chr1	66816852	66817052	-	1	NA	NA	NA	643	NM_177645	68691	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.075000	0.661692	
mm_99052.1	chr11	99051346	99051546	+	1	NA	NA	NA	10186	NM_010517	16010	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.020000	0.606965	
mm_142206.1	chr17	36988481	36988681	-	1	NA	NA	NA	923	NM_001115075	240095	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	0.050000	0.582090	
mm_25414.1	chr3	107368287	107368487	+	1	NA	NA	NA	-35098	NM_001045807	229700	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.010000	0.517413	
mm_84485.1	chr9	66845571	66845771	-	1	NA	NA	NA	-10965	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.005000	0.328358	71(GCCTATAAATGT,-,0.00)
mm_41845.1	chr5	104435020	104435220	+	1	NA	NA	NA	9	NM_001204203	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.015000	0.547264	
mm_150077.1	chr19	29386813	29387013	+	1	NA	NA	NA	19475	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.343284	
mm_91859.1	chr10	59441611	59441811	-	1	NA	NA	NA	68	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.035000	0.537313	
mm_21615.1	chr2	164275887	164276087	-	1	NA	NA	NA	2320	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.005000	0.432836	
mm_93972.1	chr10	127311570	127311770	-	1	NA	NA	NA	116	NM_001003913	216443	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	0.105000	0.656716	
mm_53781.1	chr6	146577422	146577622	+	1	NA	NA	NA	313	NM_138757	71177	Mm.271774	NM_138757	ENSMUSG00000040250	Asun	4933424B01Rik|Spata30	asunder, spermatogenesis regulator	protein-coding	0.100000	0.606965	
mm_119809.1	chr14	54222646	54222846	+	1	NA	NA	NA	31183	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.482587	
mm_100564.1	chr11	120730528	120730728	+	1	NA	NA	NA	1393	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.015000	0.547264	
mm_130007.1	chr15	86364999	86365199	-	1	NA	NA	NA	150640	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.005000	0.487562	
mm_29607.1	chr3	121262797	121262997	-	1	NA	NA	NA	419	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0.170000	0.786070	-49(GCCCCTTTAAGG,-,0.00),-47(CCCTTTAAGGAG,+,0.00),-46(CCTTTAAGGAGC,+,0.00)
mm_165766.1	chr3	121547753	121547953	-	1	NA	NA	NA	-15509	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.025000	0.517413	
mm_122726.1	chr14	52316092	52316292	-	1	NA	NA	NA	131	NM_001244916	50524	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding	0.090000	0.706468	
mm_161202.1	chr13	58397949	58398149	-	1	NA	NA	NA	4120	NM_001301343	15387	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.020000	0.402985	
mm_92320.1	chr10	75560016	75560216	-	1	NA	NA	NA	214	NM_198860	192734	Mm.259320	NM_198860	ENSMUSG00000046807	Lrrc75b	AI646023|Fam211b	leucine rich repeat containing 75B	protein-coding	0.160000	0.796020	
mm_7642.1	chr1	128102349	128102549	-	1	NA	NA	NA	22	NM_027678	226409	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0.035000	0.417910	
mm_168416.1	chr11	32283577	32283777	+	1	NA	NA	NA	2	NM_001083955	110257	Mm.196110	NM_001083955	ENSMUSG00000069917	Hba-a2	-	hemoglobin alpha, adult chain 2	protein-coding	0.010000	0.542289	
mm_150270.1	chr19	34241601	34241801	+	1	NA	NA	NA	13672	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.045000	0.552239	
mm_77359.1	chr8	119635464	119635664	-	1	NA	NA	NA	116	NM_025734	66733	Mm.358699	NM_025734	ENSMUSG00000045246	Kcng4	4921535I01Rik|AW049024|KV6.3|KV6.4	potassium voltage-gated channel, subfamily G, member 4	protein-coding	0.025000	0.621891	
mm_71692.1	chr8	61329267	61329467	+	1	NA	NA	NA	-40495	NR_045475	69279	Mm.417857	NR_045475	ENSMUSG00000099419	1700001D01Rik	-	RIKEN cDNA 1700001D01 gene	ncRNA	0.050000	0.522388	
mm_1289.1	chr1	64295516	64295716	+	1	NA	NA	NA	-174227	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.015000	0.532338	
mm_95036.1	chr11	32205394	32205594	+	1	NA	NA	NA	79	NM_030093	78372	Mm.29952	NM_030093	ENSMUSG00000040767	Snrnp25	3300001G02Rik|AL033324|C16ORF33	small nuclear ribonucleoprotein 25 (U11/U12)	protein-coding	0.075000	0.616915	
mm_104184.1	chr11	87797277	87797477	-	1	NA	NA	NA	3593	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.060000	0.582090	
mm_78680.1	chr9	40784880	40785080	+	1	NA	NA	NA	-16293	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.025000	0.398010	
mm_47188.1	chr5	120754100	120754300	-	1	NA	NA	NA	-4352	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.005000	0.398010	-30(GCCTATATGAGG,-,0.00)
mm_51907.1	chr6	91157157	91157357	+	1	NA	NA	NA	442	NM_144919	232232	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	0.005000	0.532338	
mm_149508.1	chr19	11965752	11965952	+	1	NA	NA	NA	8	NM_001033174	76303	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.165000	0.766169	
mm_69077.1	chr7	127001806	127002006	-	1	NA	NA	NA	12688	NM_080638	78388	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0.025000	0.512438	
mm_58336.1	chr6	146634500	146634700	-	1	NA	NA	NA	-8	NM_026281	67623	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	0.180000	0.805970	
mm_124669.1	chr15	6386970	6387170	+	1	NA	NA	NA	322	NM_001310446	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.010000	0.378109	
mm_114796.1	chr13	89739361	89739561	+	1	NA	NA	NA	3051	NM_001081249	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.085000	0.691542	
mm_154616.1	chrX	7657345	7657545	+	1	NA	NA	NA	66	NM_001290624	54630	Mm.232232	NM_175097	ENSMUSG00000031145	Prickle3	Lmo6|Sfc16	prickle planar cell polarity protein 3	protein-coding	0.100000	0.656716	
mm_47302.1	chr5	122371893	122372093	-	1	NA	NA	NA	-30	NM_026883	68948	Mm.474469	NM_026883	ENSMUSG00000029463	Fam216a	1500011H22Rik	family with sequence similarity 216, member A	protein-coding	0.115000	0.721393	
mm_86752.1	chr10	19592335	19592535	+	1	NA	NA	NA	486	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.040000	0.427861	
mm_144819.1	chr18	36291021	36291221	+	1	NA	NA	NA	-8980	NM_001267796	109169	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	0.000000	0.338308	
mm_91260.1	chr10	23349771	23349971	-	1	NA	NA	NA	19	NM_001347372	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.055000	0.552239	
mm_158179.1	chrX	103981041	103981241	-	1	NA	NA	NA	143	NM_011276	19820	Mm.427762	NM_011276	ENSMUSG00000056537	Rlim	AL022832|AW743871|Ha1r|Rlim1|Rnf12	ring finger protein, LIM domain interacting	protein-coding	0.095000	0.636816	
mm_173029.1	chrX	10531202	10531402	-	1	NA	NA	NA	46186	NM_019634	21912	Mm.18590	NM_019634	ENSMUSG00000058254	Tspan7	1200014P11Rik|A15|AI323365|Cd231|Mxs1|PE31|R74651|TALLA|Tm4sf2	tetraspanin 7	protein-coding	0.000000	0.313433	
mm_139379.1	chr17	51853058	51853258	+	1	NA	NA	NA	-19868	NM_001163632	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.010000	0.447761	
mm_119767.1	chr14	54173501	54173701	+	1	NA	NA	NA	80328	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.557214	
mm_37853.1	chr4	132212047	132212247	-	1	NA	NA	NA	109	NM_145393	213541	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0.175000	0.761194	
mm_89555.1	chr10	94961581	94961781	+	1	NA	NA	NA	-17103	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.020000	0.606965	
mm_49273.1	chr6	17551962	17552162	+	1	NA	NA	NA	-85036	NM_007604	12343	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.005000	0.393035	
mm_112187.1	chr12	113422536	113422736	-	1	NA	NA	NA	-66929	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.015000	0.567164	
mm_120942.1	chr14	76674255	76674455	+	1	NA	NA	NA	-3213	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.010000	0.487562	
mm_154984.1	chrX	38180505	38180705	+	1	NA	NA	NA	-9188	NM_020256	56805	Mm.391248	NM_020256	ENSMUSG00000048047	Zbtb33	AW260253|E130014G12Rik|Kaiso|Znf-kaiso	zinc finger and BTB domain containing 33	protein-coding	0.030000	0.477612	
mm_99034.1	chr11	98959692	98959892	+	1	NA	NA	NA	-679	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.055000	0.587065	
mm_97760.1	chr11	80858289	80858489	+	1	NA	NA	NA	0	NM_029367	75622	Mm.26988	NM_029367	ENSMUSG00000053184	Spaca3	1700025M08Rik|ALLP17|Lyc3|SLLP1|mSLLP1	sperm acrosome associated 3	protein-coding	0.040000	0.552239	
mm_137129.1	chr17	23564184	23564384	+	1	NA	NA	NA	-58	NM_001033496	449521	Mm.268582	NM_001033496	ENSMUSG00000071256	Zfp213	BC038178|D17Ertd197e	zinc finger protein 213	protein-coding	0.090000	0.631841	
mm_93900.1	chr10	125389933	125390133	-	1	NA	NA	NA	-61498	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.020000	0.358209	
mm_15785.1	chr2	164404285	164404485	+	1	NA	NA	NA	433	NM_013592	17183	Mm.29428	NM_013592	ENSMUSG00000016995	Matn4	matrilin-4	matrilin 4	protein-coding	0.045000	0.577114	
mm_63177.1	chr7	125444572	125444772	+	1	NA	NA	NA	52	NM_029842	77035	Mm.307239	NM_029842	ENSMUSG00000030752	Kdm8	3110005O21Rik|Jmjd5	lysine (K)-specific demethylase 8	protein-coding	0.095000	0.582090	
mm_71944.1	chr8	70374893	70375093	+	1	NA	NA	NA	1445	NM_016685	12845	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	0.100000	0.686567	
mm_125900.1	chr15	75969039	75969239	+	1	NA	NA	NA	-46	NM_001081065	69020	Mm.294295	NM_001081065	ENSMUSG00000034429	Zfp707	1500031N24Rik|AI451708|AW495315	zinc finger protein 707	protein-coding	0.085000	0.621891	
mm_96672.1	chr11	69411009	69411209	+	1	NA	NA	NA	2566	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.035000	0.601990	
mm_15883.1	chr2	164839430	164839630	+	1	NA	NA	NA	5757	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.025000	0.532338	-64(CTGCATAAAAAC,-,0.00)
mm_13213.1	chr2	96317694	96317894	+	1	NA	NA	NA	-375	NM_001289742	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.020000	0.512438	
mm_71922.1	chr8	70172304	70172504	+	1	NA	NA	NA	-4	NM_145597	234371	Mm.23488	NM_145597	ENSMUSG00000002342	Tmem161a	AI428876|BB161850|BC021367	transmembrane protein 161A	protein-coding	0.050000	0.606965	
mm_168880.1	chr12	43037362	43037562	+	1	NA	NA	NA	1172606	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.060000	0.651741	
mm_49267.1	chr6	17491129	17491329	+	1	NA	NA	NA	27272	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.015000	0.512438	
mm_17587.1	chr2	30415924	30416124	-	1	NA	NA	NA	-26	NM_138748	110854	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.105000	0.646766	
mm_107003.1	chr12	11289528	11289728	+	1	NA	NA	NA	-10259	NR_106136	102465775		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.005000	0.278607	
mm_15086.1	chr2	153240821	153241021	+	1	NA	NA	NA	437	NM_018807	54711	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	0.035000	0.582090	
mm_129733.1	chr15	82146704	82146904	-	1	NA	NA	NA	-465	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.020000	0.492537	
mm_163081.1	chr11	69088507	69088707	+	1	NA	NA	NA	79	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.120000	0.721393	
mm_52514.1	chr6	115362252	115362452	+	1	NA	NA	NA	3	NM_001308354	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.025000	0.532338	-35(GCTTTTATATAA,+,0.00),-33(TTTTATATAAGG,-,0.00)
mm_52215.1	chr6	103510583	103510783	+	1	NA	NA	NA	-193	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.020000	0.502488	
mm_26584.1	chr3	150401829	150402029	+	1	NA	NA	NA	-1035953	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.000000	0.402985	
mm_170045.1	chr17	24693879	24694079	+	1	NA	NA	NA	2177	NM_023040	11692	Mm.28124	NM_023040	ENSMUSG00000040888	Gfer	Alr|ERV1	growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)	protein-coding	0.010000	0.407960	
mm_66299.1	chr7	38107400	38107600	-	1	NA	NA	NA	-10	NM_007633	12447	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	0.170000	0.805970	
mm_17512.1	chr2	29159656	29159856	-	1	NA	NA	NA	34764	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.005000	0.452736	
mm_112584.1	chr13	13712680	13712880	+	1	NA	NA	NA	-71279	NM_001302997	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0.010000	0.393035	-80(TCTCTTAGAGCC,+,0.00)
mm_169259.1	chr13	81065075	81065275	+	1	NA	NA	NA	101101	NR_015587	319983	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.035000	0.587065	
mm_15764.1	chr2	164316623	164316823	+	1	NA	NA	NA	-28	NM_013679	20945	Mm.439686	NM_013679	ENSMUSG00000017000	Svs6	MSVSP99|Svp6	seminal vesicle secretory protein 6	protein-coding	0.000000	0.477612	
mm_171345.1	chr4	10813678	10813878	+	1	NA	NA	NA	-15976	NR_045185	73624	Mm.67392	NR_045185	ENSMUSG00000086080	1700123O12Rik	-	RIKEN cDNA 1700123O12 gene	ncRNA	0.000000	0.417910	
mm_6464.1	chr1	74030788	74030988	-	1	NA	NA	NA	93559	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.010000	0.527363	-80(CCTTTTAGGGCA,+,0.00)
mm_45139.1	chr5	49012054	49012254	-	1	NA	NA	NA	-122597	NM_030265	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.000000	0.348259	
mm_157559.1	chrX	52053346	52053546	-	1	NA	NA	NA	-80674	NM_028851	74279	Mm.159154	NM_028851	ENSMUSG00000031118	1700080O16Rik	-	RIKEN cDNA 1700080O16 gene	protein-coding	0.010000	0.373134	
mm_19041.1	chr2	77014104	77014304	-	1	NA	NA	NA	-31657	NM_011652	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.015000	0.487562	
mm_36988.1	chr4	109666731	109666931	-	1	NA	NA	NA	-75	NM_001301368	12580	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	protein-coding	0.135000	0.766169	
mm_154232.1	chr19	60226586	60226786	-	1	NA	NA	NA	11	NM_029648	76539	Mm.290183	NM_029648	ENSMUSG00000057858	Fam204a	2310065H12Rik|2610015K05Rik|D19Ertd737e	family with sequence similarity 204, member A	protein-coding	0.110000	0.651741	
mm_13470.1	chr2	105682418	105682618	+	1	NA	NA	NA	55	NM_001310145	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.010000	0.447761	
mm_110925.1	chr12	76369396	76369596	-	1	NA	NA	NA	-32	NM_001172104	109929	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0.160000	0.791045	
mm_77056.1	chr8	109578964	109579164	-	1	NA	NA	NA	108	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.025000	0.587065	-18(AGGCATAAAGGG,-,0.00)
mm_93685.1	chr10	117815473	117815673	-	1	NA	NA	NA	-22868	NM_134010	103468	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.005000	0.363184	
mm_72728.1	chr8	85071682	85071882	+	1	NA	NA	NA	25	NM_001039514	330817	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	0.110000	0.706468	
mm_9387.1	chr1	172213853	172214053	-	1	NA	NA	NA	5942	NM_009813	12372	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.005000	0.557214	
mm_76787.1	chr8	102681407	102681607	-	1	NA	NA	NA	103604	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.000000	0.398010	
mm_76055.1	chr8	77724171	77724371	-	1	NA	NA	NA	181	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	0.050000	0.641791	
mm_52568.1	chr6	116286467	116286667	+	1	NA	NA	NA	20035	NM_001290339	67492	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0.015000	0.452736	
mm_33213.1	chr4	126609758	126609958	+	1	NA	NA	NA	4	NM_001145950	230757	Mm.296838	NM_001013755	ENSMUSG00000073755	5730409E04Rik	7530403E16Rik|AI849033	RIKEN cDNA 5730409E04Rik gene	protein-coding	0.105000	0.726368	
mm_29576.1	chr3	116968920	116969120	-	1	NA	NA	NA	-68	NM_023245	114301	Mm.253736	NM_023245	ENSMUSG00000033377	Palmd	4631423C22Rik|PALML	palmdelphin	protein-coding	0.030000	0.547264	
mm_46551.1	chr5	106624258	106624458	-	1	NA	NA	NA	72472	NM_026856	52397	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.010000	0.422886	
mm_35713.1	chr4	44233766	44233966	-	1	NA	NA	NA	-12599	NR_039565	100628618		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA	0.210000	0.845771	
mm_23067.1	chr3	36065983	36066183	+	1	NA	NA	NA	83	NM_172678	229211	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	0.100000	0.666667	
mm_11160.1	chr2	28555760	28555960	+	1	NA	NA	NA	7543	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.000000	0.417910	
mm_128699.1	chr15	63470795	63470995	-	1	NA	NA	NA	8713	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA	0.015000	0.368159	
mm_163858.1	chr14	19418493	19418693	-	1	NA	NA	NA	183994	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.348259	
mm_101409.1	chr11	28365470	28365670	-	1	NA	NA	NA	218754	NM_001166661	216613	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	0.045000	0.582090	
mm_61692.1	chr7	81087090	81087290	+	1	NA	NA	NA	-27609	NM_001004184	434203	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	0.005000	0.467662	-24(CAGTCTAAAGGG,-,0.00)
mm_33958.1	chr4	137485069	137485269	+	1	NA	NA	NA	16366	NM_008305	15530	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	0.025000	0.462687	
mm_90984.1	chr10	13832540	13832740	-	1	NA	NA	NA	36317	NM_025446	66253	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	0.010000	0.442786	
mm_12941.1	chr2	85136376	85136576	+	1	NA	NA	NA	116	NM_011784	23796	Mm.29368	NM_011784	ENSMUSG00000044338	Aplnr	APJ|Agtrl1|msr/apj	apelin receptor	protein-coding	0.020000	0.587065	
mm_113212.1	chr13	25127154	25127354	+	1	NA	NA	NA	71250	NM_177577	195208	Mm.284719	NM_177577	ENSMUSG00000035910	Dcdc2a	AW492955|Dcdc2|RU2	doublecortin domain containing 2a	protein-coding	0.000000	0.393035	
mm_79131.1	chr9	47547842	47548042	+	1	NA	NA	NA	17590	NM_018770	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.005000	0.427861	
mm_158880.1	chr1	5588370	5588570	+	1	NA	NA	NA	-23	NM_011011	18387	Mm.7977	NM_011011	ENSMUSG00000025905	Oprk1	K-OR-1|KOR|KOR-1|MSL-1|Oprk2|R21	opioid receptor, kappa 1	protein-coding	0.030000	0.631841	
mm_139834.1	chr17	69156459	69156659	+	1	NA	NA	NA	-251	NM_013813	13823	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.020000	0.562189	-35(ATCTCTAAAGGG,-,0.00)
mm_65582.1	chr7	27232780	27232980	-	1	NA	NA	NA	-133	NM_133770	76889	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0.040000	0.547264	
mm_140464.1	chr17	92309123	92309323	+	1	NA	NA	NA	-889794	NM_001315503	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.000000	0.323383	
mm_11537.1	chr2	32630225	32630425	+	1	NA	NA	NA	825	NM_021515	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.035000	0.597015	
mm_96222.1	chr11	62511620	62511820	+	1	NA	NA	NA	27541	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.010000	0.532338	
mm_57069.1	chr6	122577897	122578097	-	1	NA	NA	NA	24188	NM_009645	11628	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.010000	0.427861	
mm_158233.1	chrX	106485051	106485251	-	1	NA	NA	NA	78	NM_001007580	333564	Mm.298000	NM_001007580	ENSMUSG00000033737	Fndc3c1	Fndc3c|Gm784	fibronectin type III domain containing 3C1	protein-coding	0.050000	0.542289	
mm_100922.1	chr11	6444265	6444465	-	1	NA	NA	NA	78	NM_029938	77605	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av	H2A histone family, member V	protein-coding	0.160000	0.776119	
mm_96939.1	chr11	70539957	70540157	+	1	NA	NA	NA	-215	NM_008876	18806	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	0.095000	0.706468	
mm_49194.1	chr6	15186774	15186974	+	1	NA	NA	NA	1368	NM_001286607	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.015000	0.457711	
mm_23935.1	chr3	84071901	84072101	+	1	NA	NA	NA	-31840	NM_172681	229473	Mm.28838	NM_172681	ENSMUSG00000033767	D930015E06Rik	Kiaa0922|mKIAA0922	RIKEN cDNA D930015E06 gene	protein-coding	0.010000	0.412935	
mm_111192.1	chr12	84193649	84193849	-	1	NA	NA	NA	266	NM_001163502	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.100000	0.701493	
mm_111507.1	chr12	99563624	99563824	-	1	NA	NA	NA	-117	NR_136760	102639404	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.105000	0.741294	
mm_120858.1	chr14	75229141	75229341	+	1	NA	NA	NA	-13046	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.010000	0.517413	
mm_86505.1	chr10	7589732	7589932	+	1	NA	NA	NA	32	NM_172784	237253	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	0.140000	0.736318	
mm_81657.1	chr9	110960834	110961034	+	1	NA	NA	NA	9389	NM_028838	74249	Mm.307615	NM_028838	ENSMUSG00000032495	Lrrc2	2400002D05Rik|4933431K03Rik	leucine rich repeat containing 2	protein-coding	0.020000	0.547264	
mm_82412.1	chr9	14784442	14784642	-	1	NA	NA	NA	-112	NM_001310728	17535	Mm.149071	NM_018736	ENSMUSG00000031928	Mre11a	Mre11|Mre11b	MRE11A homolog A, double strand break repair nuclease	protein-coding	0.075000	0.611940	
mm_138974.1	chr17	45298529	45298729	+	1	NA	NA	NA	135078	NM_152810	71702	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0.015000	0.621891	
mm_66336.1	chr7	43313006	43313206	-	1	NA	NA	NA	155	NM_027264	69930	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0.105000	0.696517	
mm_22431.1	chr2	181671505	181671705	-	1	NA	NA	NA	35	NM_009236	20672	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	0.085000	0.646766	
mm_86784.1	chr10	20171815	20172015	+	1	NA	NA	NA	22995	NM_001198635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.005000	0.567164	
mm_137866.1	chr17	31296893	31297093	+	1	NA	NA	NA	769	NM_001242427	224674	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.030000	0.477612	
mm_3983.1	chr1	164275578	164275778	+	1	NA	NA	NA	80	NM_029115	74895	Mm.167258	NM_029115	ENSMUSG00000026578	Ccdc181	4930455F23Rik|AI427889	coiled-coil domain containing 181	protein-coding	0.050000	0.631841	
mm_105573.1	chr11	106612851	106613051	-	1	NA	NA	NA	-21	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.140000	0.805970	
mm_170997.1	chr2	75661688	75661888	+	1	NA	NA	NA	2498	NR_033513	627828	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	0.020000	0.393035	
mm_121089.1	chr14	99301548	99301748	+	1	NA	NA	NA	2957	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.035000	0.567164	
mm_139548.1	chr17	56770182	56770382	+	1	NA	NA	NA	6	NM_001195673	100504446	Mm.46157	NM_001195673	ENSMUSG00000090273	Prr22	Gm546	proline rich 22	protein-coding	0.015000	0.641791	
mm_123189.1	chr14	57890181	57890381	-	1	NA	NA	NA	-19	NM_029492	75965	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|ENSMUSG00000055956|HK11	zinc finger, DHHC domain containing 20	protein-coding	0.110000	0.761194	
mm_63997.1	chr7	140115781	140115981	+	1	NA	NA	NA	542	NM_053119	93747	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	0.025000	0.497512	-95(TTCTCTTAAAGC,-,0.00)
mm_30878.1	chr4	32238888	32239088	+	1	NA	NA	NA	-178447	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.130000	0.766169	
mm_24917.1	chr3	96269599	96269799	+	1	NA	NA	NA	-1	NM_175666	319189	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	0.060000	0.487562	
mm_115505.1	chr13	4279245	4279445	-	1	NA	NA	NA	54	NM_013777	622402	Mm.27447	NM_013777	ENSMUSG00000021211	Akr1c12	AI266976|Akra	aldo-keto reductase family 1, member C12	protein-coding	0.010000	0.462687	
mm_17212.1	chr2	25478253	25478453	-	1	NA	NA	NA	-8604	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.005000	0.517413	
mm_20396.1	chr2	129183708	129183908	-	1	NA	NA	NA	-3135	NR_045264	100048701	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	OTTMUSG00000015420	expressed sequence AI847159	ncRNA	0.035000	0.582090	
mm_151360.1	chr19	55910542	55910742	+	1	NA	NA	NA	15321	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.035000	0.467662	
mm_5597.1	chr1	39558867	39559067	-	1	NA	NA	NA	-10127	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.005000	0.328358	
mm_51263.1	chr6	72097641	72097841	+	1	NA	NA	NA	133	NM_011375	20454	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.115000	0.761194	
mm_112471.1	chr13	5868388	5868588	+	1	NA	NA	NA	6999	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.020000	0.402985	
mm_106333.1	chr11	118355273	118355473	-	1	NA	NA	NA	38	NM_011594	21858	Mm.206505	NM_011594	ENSMUSG00000017466	Timp2	D11Bwg1104e|Timp-2	tissue inhibitor of metalloproteinase 2	protein-coding	0.110000	0.721393	
mm_163103.1	chr11	69735339	69735539	-	1	NA	NA	NA	23194	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.020000	0.597015	
mm_169810.1	chr16	19035894	19036094	+	1	NA	NA	NA	159244	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.035000	0.502488	
mm_154449.1	chrM	1887	2087	-	1	NA	NA	NA	NA	NA									0.040000	0.457711	
mm_16059.1	chr2	167863010	167863210	+	1	NA	NA	NA	-69217	NM_011201	19246	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.020000	0.477612	
mm_46468.1	chr5	105122847	105123047	-	1	NA	NA	NA	-12655	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.005000	0.393035	
mm_123002.1	chr14	54993245	54993445	-	1	NA	NA	NA	1204	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.010000	0.512438	
mm_160315.1	chr7	142090102	142090302	-	1	NA	NA	NA	5082	NM_008748	18218	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	0.035000	0.621891	
mm_99729.1	chr11	106301019	106301219	+	1	NA	NA	NA	777	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.030000	0.592040	
mm_62519.1	chr7	102229936	102230136	+	1	NA	NA	NA	7008	NR_111937	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.010000	0.572139	
mm_28342.1	chr3	89402424	89402624	-	1	NA	NA	NA	126	NM_020517	57275	Mm.482283	NM_020517	ENSMUSG00000078173	Lenep	AU018355|Lep503	lens epithelial protein	protein-coding	0.015000	0.562189	
mm_138656.1	chr17	35868357	35868557	+	1	NA	NA	NA	1842	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.030000	0.671642	
mm_5365.1	chr1	25830040	25830240	-	1	NA	NA	NA	-433	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.165000	0.741294	
mm_61002.1	chr7	49343328	49343528	+	1	NA	NA	NA	97239	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.040000	0.592040	
mm_111118.1	chr12	80967914	80968114	-	1	NA	NA	NA	65	NM_011387	20493	Mm.486361	NM_011387	ENSMUSG00000021135	Slc10a1	Ntcp	solute carrier family 10 (sodium/bile acid cotransporter family), member 1	protein-coding	0.020000	0.507463	
mm_15588.1	chr2	160365694	160365894	+	1	NA	NA	NA	1271	NM_010658	16658	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.060000	0.611940	
mm_91393.1	chr10	30745767	30745967	-	1	NA	NA	NA	57240	NM_172495	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.005000	0.487562	
mm_82213.1	chr9	3000128	3000328	-	1	NA	NA	NA	38515	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.010000	0.323383	
mm_52157.1	chr6	98018572	98018772	+	1	NA	NA	NA	26889	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.015000	0.437811	53(CCTTAAAGACAC,+,0.00)
mm_39193.1	chr4	155992237	155992437	-	1	NA	NA	NA	341	NM_080445	117592	Mm.440185	NM_080445	ENSMUSG00000050796	B3galt6	BB129894|GalTII	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	protein-coding	0.155000	0.751244	
mm_141994.1	chr17	35177355	35177555	-	1	NA	NA	NA	-1454	NM_019467	11629	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.010000	0.373134	
mm_51463.1	chr6	82070665	82070865	+	1	NA	NA	NA	29137	NM_145570	232146	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	0.020000	0.552239	
mm_140934.1	chr17	24414377	24414577	-	1	NA	NA	NA	36	NR_033554	654822	Mm.489806	NM_001039561	ENSMUSG00000073437	D330041H03Rik	-	RIKEN cDNA D330041H03 gene	ncRNA	0.070000	0.611940	
mm_53744.1	chr6	145182185	145182385	+	1	NA	NA	NA	28685	NM_177222	320662	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	0.015000	0.542289	
mm_127723.1	chr15	103239870	103240070	+	1	NA	NA	NA	-154	NM_001076789	12419	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0.085000	0.587065	82(CGCCTTATAGGG,-,0.00),84(CCTTATAGGGAG,+,0.00)
mm_77338.1	chr8	119558701	119558901	-	1	NA	NA	NA	-40	NM_019709	56453	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	0.150000	0.716418	
mm_167070.1	chr7	99579660	99579860	+	1	NA	NA	NA	27491	NR_029760	723840		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	0.045000	0.621891	
mm_3866.1	chr1	160989319	160989519	+	1	NA	NA	NA	10813	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.035000	0.552239	
mm_109560.1	chr12	111814112	111814312	+	1	NA	NA	NA	42	NM_026752	68520	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	0.115000	0.681592	
mm_99921.1	chr11	110479257	110479457	+	1	NA	NA	NA	80235	NM_011943	26399	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.025000	0.512438	
mm_48239.1	chr5	137741265	137741465	-	1	NA	NA	NA	-197	NM_001347505	243300	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	0.080000	0.671642	
mm_37223.1	chr4	117926666	117926866	-	1	NA	NA	NA	2997	NM_001284191	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.110000	0.706468	
mm_169274.1	chr13	89861886	89862086	+	1	NA	NA	NA	-119474	NM_001134475	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.020000	0.502488	
mm_96960.1	chr11	70640267	70640467	+	1	NA	NA	NA	1245	NM_010326	14723	Mm.377085	NM_010326	ENSMUSG00000050675	Gp1ba	GPIba|GPIbalpha	glycoprotein 1b, alpha polypeptide	protein-coding	0.015000	0.442786	
mm_89518.1	chr10	94338650	94338850	+	1	NA	NA	NA	-40047	NR_033209	215472	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	0.010000	0.298507	
mm_92916.1	chr10	83648557	83648757	-	1	NA	NA	NA	7	NM_145220	216190	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.120000	0.731343	
mm_10308.1	chr2	11172067	11172267	+	1	NA	NA	NA	-215	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.090000	0.666667	
mm_129725.1	chr15	82016008	82016208	-	1	NA	NA	NA	32	NM_134095	28075	Mm.474453	NM_134095	ENSMUSG00000022472	Desi1	AI427858|AI850401|D15Wsu75e|DeSI-1|Fam152b|Pppde2	desumoylating isopeptidase 1	protein-coding	0.105000	0.731343	
mm_140327.1	chr17	86753807	86754007	+	1	NA	NA	NA	43	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.045000	0.447761	
mm_96711.1	chr11	69656427	69656627	+	1	NA	NA	NA	1490	NM_009235	20670	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0.005000	0.547264	
mm_67609.1	chr7	83883444	83883644	-	1	NA	NA	NA	797	NM_030705	80889	Mm.272998	NM_030705	ENSMUSG00000070462	Mesdc1	AW061151	mesoderm development candidate 1	protein-coding	0.085000	0.666667	
mm_64699.1	chr7	4547264	4547464	-	1	NA	NA	NA	-797	NM_016908	53420	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	0.035000	0.626866	
mm_103782.1	chr11	82764216	82764416	-	1	NA	NA	NA	5	NM_009839	12467	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0.080000	0.621891	
mm_164688.1	chr17	47687898	47688098	-	1	NA	NA	NA	388	NR_045945	100415787	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|OTTMUSG00000018355|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	0.130000	0.646766	
mm_134504.1	chr16	19063176	19063376	-	1	NA	NA	NA	186526	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.005000	0.442786	
mm_129556.1	chr15	79505721	79505921	-	1	NA	NA	NA	-580	NM_008427	16520	Mm.39759	NM_008427	ENSMUSG00000044216	Kcnj4	IRK3|Kcnf2|MB-IRK3	potassium inwardly-rectifying channel, subfamily J, member 4	protein-coding	0.160000	0.800995	
mm_126217.1	chr15	78913809	78914009	+	1	NA	NA	NA	-10	NM_020271	57028	Mm.263169	NM_020271	ENSMUSG00000022436	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	0.140000	0.696517	
mm_46940.1	chr5	114823349	114823549	-	1	NA	NA	NA	19	NM_181075	330173	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	0.105000	0.721393	
mm_150022.1	chr19	29372252	29372452	+	1	NA	NA	NA	4914	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.015000	0.437811	2(GCTTTTAGGGCT,+,0.00)
mm_8814.1	chr1	161979569	161979769	-	1	NA	NA	NA	-33	NM_001204904	75368	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	0.005000	0.477612	
mm_115287.1	chr13	111936120	111936320	+	1	NA	NA	NA	68284	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.010000	0.507463	
mm_23412.1	chr3	58517442	58517642	+	1	NA	NA	NA	-8279	NM_001005509	229317	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	0.020000	0.542289	
mm_20451.1	chr2	129364820	129365020	-	1	NA	NA	NA	-4982	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.015000	0.507463	
mm_33924.1	chr4	136639950	136640150	+	1	NA	NA	NA	17429	NM_001243262	242707	Mm.448979	NM_001243262	ENSMUSG00000070683	Lactbl1	-	lactamase, beta-like 1	protein-coding	0.010000	0.442786	
mm_152467.1	chr19	10948471	10948671	-	1	NA	NA	NA	695	NM_023731	108673	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0.055000	0.656716	
mm_164514.1	chr16	95612496	95612696	+	1	NA	NA	NA	-26003	NM_001302152	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	0.030000	0.522388	
mm_62856.1	chr7	114502326	114502526	+	1	NA	NA	NA	60546	NR_110407	244209	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0.000000	0.447761	-71(CCTTCTTAAAGG,-,0.00)
mm_65878.1	chr7	29555507	29555707	-	1	NA	NA	NA	-50147	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.015000	0.492537	-16(GCTTAAAGGCGC,+,0.00)
mm_148037.1	chr18	70244388	70244588	-	1	NA	NA	NA	96	NM_029346	75577	Mm.58214	NM_029346	ENSMUSG00000024512	Dynap	2310002L13Rik	dynactin associated protein	protein-coding	0.025000	0.422886	
mm_122175.1	chr14	31545687	31545887	-	1	NA	NA	NA	31596	NM_009937	382864	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.010000	0.393035	
mm_11047.1	chr2	27165467	27165667	+	1	NA	NA	NA	60	NM_138942	13166	Mm.167781	NM_138942	ENSMUSG00000000889	Dbh	-	dopamine beta hydroxylase	protein-coding	0.025000	0.621891	
mm_138143.1	chr17	34204001	34204201	+	1	NA	NA	NA	-378	NM_011530	21355	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.020000	0.562189	
mm_35730.1	chr4	45011576	45011776	-	1	NA	NA	NA	736	NM_001163284	230119	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0.050000	0.557214	
mm_170602.1	chr19	5802515	5802715	-	1	NA	NA	NA	57	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.050000	0.472637	
mm_54790.1	chr6	41636212	41636412	-	1	NA	NA	NA	93	NM_022413	64177	Mm.296889	NM_022413	ENSMUSG00000029868	Trpv6	CAT|CaT1|Cac|Ecac2|Otrpc3	transient receptor potential cation channel, subfamily V, member 6	protein-coding	0.015000	0.601990	
mm_111604.1	chr12	102395594	102395794	-	1	NA	NA	NA	44119	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.020000	0.547264	
mm_67500.1	chr7	80778551	80778751	-	1	NA	NA	NA	24680	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.020000	0.467662	
mm_53750.1	chr6	145306950	145307150	+	1	NA	NA	NA	56498	NR_045598	100039495	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	OTTMUSG00000025463	predicted gene 15706	ncRNA	0.020000	0.442786	
mm_149966.1	chr19	29047408	29047608	+	1	NA	NA	NA	25	NR_028360	67329	Mm.394933	NR_028360		1700018L02Rik	-	RIKEN cDNA 1700018L02 gene	ncRNA	0.065000	0.616915	
mm_104580.1	chr11	96956130	96956330	-	1	NA	NA	NA	12084	NR_003293	319371	Mm.436865	NR_003293	ENSMUSG00000078700	D030028A08Rik	-	RIKEN cDNA D030028A08 gene	ncRNA	0.035000	0.611940	
mm_82143.1	chr9	123769803	123770003	+	1	NA	NA	NA	2692	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.010000	0.412935	74(TCCTTTAAAAAA,-,0.00)
mm_90964.1	chr10	13374967	13375167	-	1	NA	NA	NA	13903	NM_001195066	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.000000	0.407960	
mm_104260.1	chr11	88924605	88924805	-	1	NA	NA	NA	18777	NR_045955	73921	Mm.439148	NR_045955	ENSMUSG00000087338	Scpep1os	4930405P13Rik	serine carboxypeptidase 1, opposite strand	ncRNA	0.010000	0.537313	
mm_98105.1	chr11	86758130	86758330	+	1	NA	NA	NA	-738	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.045000	0.592040	
mm_99278.1	chr11	101279002	101279202	+	1	NA	NA	NA	-101	NM_026562	68107	Mm.262369	NM_026562	ENSMUSG00000078653	Cntd1	1700051C09Rik|4921513J16Rik|5430417M23Rik|Cntd	cyclin N-terminal domain containing 1	protein-coding	0.050000	0.532338	
mm_168734.1	chr12	115085511	115085711	-	1	NA	NA	NA	-571917	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.457711	-26(CACTCTAAAAAC,-,0.00)
mm_106845.1	chr12	8007710	8007910	+	1	NA	NA	NA	30133	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.020000	0.467662	
mm_101854.1	chr11	48868005	48868205	-	1	NA	NA	NA	3241	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding	0.000000	0.492537	
mm_88695.1	chr10	80142203	80142403	+	1	NA	NA	NA	-12	NM_025313	66043	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0.070000	0.616915	
mm_68030.1	chr7	101012121	101012321	-	1	NA	NA	NA	-168	NM_001302346	18442	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0.080000	0.606965	
mm_58489.1	chr7	3657638	3657838	+	1	NA	NA	NA	1776	NR_039587	100628594		NR_039587	ENSMUSG00000093290	Mir3572	mir-3572|mmu-mir-3572	microRNA 3572	ncRNA	0.005000	0.378109	
mm_70802.1	chr8	22938131	22938331	+	1	NA	NA	NA	-36605	NM_001110783	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.015000	0.457711	
mm_38676.1	chr4	144980710	144980910	-	1	NA	NA	NA	87673	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.000000	0.402985	
mm_63598.1	chr7	128144517	128144717	+	1	NA	NA	NA	15049	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.015000	0.552239	
mm_22259.1	chr2	177938919	177939119	-	1	NA	NA	NA	-13369	NM_183135	78703		NM_183135	ENSMUSG00000074529	Zfp972	C330013J21Rik	zinc finger protein 972	protein-coding	0.005000	0.268657	
mm_120930.1	chr14	76487666	76487866	+	1	NA	NA	NA	-670	NM_001177751	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.035000	0.557214	
mm_74910.1	chr8	25240793	25240993	-	1	NA	NA	NA	-39351	NM_177089	320165	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.120000	0.746269	
mm_14909.1	chr2	150570315	150570515	+	1	NA	NA	NA	0	NM_009977	13011	Mm.12965	NM_009977	ENSMUSG00000068129	Cst7	Cmap	cystatin F (leukocystatin)	protein-coding	0.015000	0.527363	
mm_51868.1	chr6	90550767	90550967	+	1	NA	NA	NA	19	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.030000	0.606965	
mm_36042.1	chr4	57249045	57249245	-	1	NA	NA	NA	52692	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.025000	0.507463	
mm_130659.1	chr15	100641416	100641616	-	1	NA	NA	NA	-4576	NM_001033872	207818	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.035000	0.537313	
mm_1040.1	chr1	58795411	58795611	+	1	NA	NA	NA	137	NM_009812	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.040000	0.507463	
mm_156460.1	chrX	142832434	142832634	+	1	NA	NA	NA	93534	NR_030523	723976		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	0.015000	0.557214	
mm_47202.1	chr5	120906554	120906754	-	1	NA	NA	NA	871	NM_145211	246730	Mm.14301	NM_145211	ENSMUSG00000052776	Oas1a	L3	2'-5' oligoadenylate synthetase 1A	protein-coding	0.010000	0.427861	
mm_141810.1	chr17	34603474	34603674	-	1	NA	NA	NA	-13	NM_019403	54197	Mm.274542	NM_019403	ENSMUSG00000015478	Rnf5	2410131O05Rik|AA407576|NG2	ring finger protein 5	protein-coding	0.035000	0.522388	
mm_137296.1	chr17	24804200	24804400	+	1	NA	NA	NA	-82	NM_029197	75178	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	0.110000	0.731343	
mm_136219.1	chr16	89960722	89960922	-	1	NA	NA	NA	5	NM_009384	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.050000	0.616915	
mm_71987.1	chr8	70616054	70616254	+	1	NA	NA	NA	-690	NM_153074	211228	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0.000000	0.567164	
mm_66131.1	chr7	31055527	31055727	-	1	NA	NA	NA	29	NM_052992	56188	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	0.020000	0.641791	
mm_15125.1	chr2	153804917	153805117	+	1	NA	NA	NA	24138	NR_036629	100504221	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	0.025000	0.552239	
mm_128751.1	chr15	64571066	64571266	-	1	NA	NA	NA	-188247	NM_010026	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.010000	0.497512	
mm_152222.1	chr19	8518887	8519087	-	1	NA	NA	NA	-72267	NM_001164634	19879	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	0.020000	0.472637	-35(GTCTATTTAAGG,-,0.00),-33(CTATTTAAGGAC,+,0.00)
mm_161934.1	chr18	86712877	86713077	+	1	NA	NA	NA	912	NM_172633	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.055000	0.626866	
mm_142473.1	chr17	45674132	45674332	-	1	NA	NA	NA	11986	NM_198167	224807	Mm.157904	NM_198167	ENSMUSG00000036026	Tmem63b	BC026370	transmembrane protein 63b	protein-coding	0.045000	0.557214	
mm_122858.1	chr14	54877442	54877642	-	1	NA	NA	NA	-4	NM_001167908	105651	Mm.297365	NM_001167908	ENSMUSG00000072494	Ppp1r3e	A630071A11Rik|AW049239|Gm1211	protein phosphatase 1, regulatory (inhibitor) subunit 3E	protein-coding	0.075000	0.651741	
mm_131202.1	chr16	8619412	8619612	+	1	NA	NA	NA	18189	NM_025708	66690	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	0.015000	0.522388	36(CATTATAAAGGC,+,0.00)
mm_106578.1	chr11	120727200	120727400	-	1	NA	NA	NA	-16	NM_001347608	67880	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	0.045000	0.587065	-30(CCTTTTCAAGAC,+,0.00)
mm_27713.1	chr3	68493958	68494158	-	1	NA	NA	NA	-123	NM_001282044	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.105000	0.751244	
mm_79167.1	chr9	47850444	47850644	+	1	NA	NA	NA	-32336	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.015000	0.383085	
mm_21602.1	chr2	164238166	164238366	-	1	NA	NA	NA	75	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.452736	
mm_29210.1	chr3	106789979	106790179	-	1	NA	NA	NA	70	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.010000	0.432836	
mm_114287.1	chr13	58756418	58756618	+	1	NA	NA	NA	5793	NR_045469	67585	Mm.84751	NR_045469		4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	0.020000	0.467662	
mm_107634.1	chr12	52097633	52097833	+	1	NA	NA	NA	-13	NM_029760	76826	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	0.080000	0.601990	
mm_168316.1	chr11	109012018	109012218	-	1	NA	NA	NA	91769	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.025000	0.472637	-99(GCCCATAAGAGA,-,0.00)
mm_38993.1	chr4	151129269	151129469	-	1	NA	NA	NA	39799	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	0.055000	0.656716	
mm_106891.1	chr12	8012195	8012395	+	1	NA	NA	NA	34618	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.000000	0.432836	
mm_2611.1	chr1	120340665	120340865	+	1	NA	NA	NA	183	NM_207233	226359	Mm.337409	NM_207233	ENSMUSG00000036907	C1ql2	BC040774|CTRP10	complement component 1, q subcomponent-like 2	protein-coding	0.100000	0.691542	
mm_132692.1	chr16	43235931	43236131	+	1	NA	NA	NA	-11253	NM_181058	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.015000	0.427861	
mm_157829.1	chrX	74243953	74244153	-	1	NA	NA	NA	2481	NM_010227	192176	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	0.010000	0.557214	
mm_111017.1	chr12	79007211	79007411	-	1	NA	NA	NA	-34	NM_178745	268567	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.125000	0.726368	
mm_47399.1	chr5	123049300	123049500	-	1	NA	NA	NA	-2384	NM_001347456	74890	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0.025000	0.562189	
mm_150875.1	chr19	45058623	45058823	+	1	NA	NA	NA	11147	NM_001178013	94280	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.065000	0.582090	
mm_169177.1	chr13	65703793	65703993	+	1	NA	NA	NA	-409560	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.020000	0.522388	
mm_85840.1	chr9	110532739	110532939	-	1	NA	NA	NA	242	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.140000	0.761194	
mm_26819.1	chr3	10331292	10331492	-	1	NA	NA	NA	47	NM_018864	55980	Mm.183042	NM_018864	ENSMUSG00000027531	Impa1	2610002K09Rik|2900059K10Rik|AI325909	inositol (myo)-1(or 4)-monophosphatase 1	protein-coding	0.120000	0.631841	-46(GGGTTTTAATGG,-,0.00),-44(GTTTTAATGGGG,+,0.00)
mm_26203.1	chr3	138528496	138528696	+	1	NA	NA	NA	1328	NM_001313980	13684	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.010000	0.398010	31(GCGCATAAAGGC,-,0.00)
mm_70433.1	chr8	11556380	11556580	+	1	NA	NA	NA	23	NM_011919	26356	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.125000	0.711443	
mm_137103.1	chr17	21707654	21707854	+	1	NA	NA	NA	13	NM_001008501	240034	Mm.34723	NM_001008501	ENSMUSG00000067928	Zfp760	9430018I06|BC029103	zinc finger protein 760	protein-coding	0.070000	0.616915	
mm_133805.1	chr16	95698692	95698892	+	1	NA	NA	NA	-3615	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.015000	0.542289	-34(AGCCTTATAAGG,-,0.00),-32(CCTTATAAGGGA,+,0.00)
mm_167551.1	chr9	33867843	33868043	+	1	NA	NA	NA	-174428	NR_040744	77119	Mm.367930	NR_040744	ENSMUSG00000098758	7630403G23Rik	-	RIKEN cDNA 7630403G23 gene	ncRNA	0.005000	0.363184	
mm_138322.1	chr17	34849793	34849993	+	1	NA	NA	NA	311	NM_021337	108077	Mm.18845	NM_021337	ENSMUSG00000040356	Skiv2l	4930534J06Rik|AW214248|Ddx13|SKI|Ski2w	superkiller viralicidic activity 2-like (S. cerevisiae)	protein-coding	0.020000	0.562189	-42(TCTTTTAGGCTC,+,0.00)
mm_131833.1	chr16	22959111	22959311	+	1	NA	NA	NA	8139	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.010000	0.447761	
mm_12383.1	chr2	69867355	69867555	+	1	NA	NA	NA	5893	NM_009278	20823	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	0.000000	0.338308	
mm_122017.1	chr14	27379369	27379569	-	1	NA	NA	NA	18080	NM_001289688	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.005000	0.507463	1(GCTTTTAAGGAG,+,0.00)
mm_163001.1	chr11	32237139	32237339	-	1	NA	NA	NA	10734	NM_010822	268395	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	0.020000	0.522388	-24(AGCTAGAAAAGC,-,0.00),-4(ACCTTTTAATGG,-,0.00),-2(CTTTTAATGGCG,+,0.00)
mm_162876.1	chr10	97509889	97510089	+	1	NA	NA	NA	27658	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.000000	0.407960	
mm_64467.1	chr7	143004982	143005182	+	1	NA	NA	NA	36	NM_001128080	27027	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.010000	0.552239	
mm_98324.1	chr11	90257301	90257501	+	1	NA	NA	NA	7925	NM_026178	67468	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.035000	0.457711	-5(CTCTTTAAACGG,+,0.00)
mm_40736.1	chr5	66259797	66259997	+	1	NA	NA	NA	-1	NM_001302833	70918	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	0.050000	0.651741	
mm_28934.1	chr3	98881983	98882183	-	1	NA	NA	NA	11147	NM_019545	56185	Mm.281874	NM_019545	ENSMUSG00000027870	Hao2	AI325478|Hao-2|Hao3|Haox3	hydroxyacid oxidase 2	protein-coding	0.000000	0.502488	
mm_130520.1	chr15	98872110	98872310	-	1	NA	NA	NA	-1005	NM_001033276	381022	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.070000	0.636816	
mm_104070.1	chr11	86586301	86586501	-	1	NA	NA	NA	-2243	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.020000	0.512438	
mm_122531.1	chr14	47384539	47384739	-	1	NA	NA	NA	10779	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.010000	0.393035	
mm_59139.1	chr7	24134099	24134299	+	1	NA	NA	NA	36	NM_019941	56525	Mm.295595	NM_019941	ENSMUSG00000047603	Zfp235	0610030O19Rik|AI428448	zinc finger protein 235	protein-coding	0.065000	0.587065	
mm_169069.1	chr13	28188703	28188903	+	1	NA	NA	NA	46319	NM_023746	28078	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0.000000	0.432836	
mm_82435.1	chr9	15112051	15112251	-	1	NA	NA	NA	-43	NM_001164797	244698	Mm.325134	NM_001164797	ENSMUSG00000031936	Hephl1	Gm509|Zp|zyklopen	hephaestin-like 1	protein-coding	0.015000	0.542289	
mm_77281.1	chr8	116713760	116713960	-	1	NA	NA	NA	19131	NM_029441	75796	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.010000	0.328358	
mm_76060.1	chr8	77724407	77724607	-	1	NA	NA	NA	-55	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	0.015000	0.547264	
mm_51332.1	chr6	72357860	72358060	+	1	NA	NA	NA	2477	NM_144916	232086	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	0.010000	0.606965	
mm_116913.1	chr13	55487964	55488164	-	1	NA	NA	NA	12	NM_001177371	56320	Mm.19016	NM_019813	ENSMUSG00000034675	Dbn1	-	drebrin 1	protein-coding	0.140000	0.776119	
mm_83287.1	chr9	43107006	43107206	-	1	NA	NA	NA	-1388	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0.025000	0.388060	51(TTGTATAAAAGG,-,0.00)
mm_6846.1	chr1	84238081	84238281	-	1	NA	NA	NA	-19220	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.398010	
mm_2194.1	chr1	89235091	89235291	+	1	NA	NA	NA	164729	NM_133816	98402	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.020000	0.517413	-35(CACCCTATAAGA,-,0.00)
mm_29310.1	chr3	107969070	107969270	-	1	NA	NA	NA	4	NM_010359	14864	Mm.440885	NM_010359	ENSMUSG00000004038	Gstm3	Fsc2|mGSTM5	glutathione S-transferase, mu 3	protein-coding	0.025000	0.577114	
mm_155027.1	chrX	42067879	42068079	+	1	NA	NA	NA	143	NM_009688	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.075000	0.691542	
mm_136030.1	chr16	76403595	76403795	-	1	NA	NA	NA	-30646	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.055000	0.497512	
mm_27583.1	chr3	59101718	59101918	-	1	NA	NA	NA	3	NM_173398	229323	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	0.010000	0.442786	
mm_119978.1	chr14	55560966	55561166	+	1	NA	NA	NA	143	NM_001199009	28199	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.015000	0.452736	
mm_123566.1	chr14	66871584	66871784	-	1	NA	NA	NA	2834	NM_001034881	432870	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	0.015000	0.457711	
mm_23783.1	chr3	79336568	79336768	+	1	NA	NA	NA	-8708	NM_001142953	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.015000	0.512438	
mm_72198.1	chr8	72548441	72548641	+	1	NA	NA	NA	-231	NM_027485	70625	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	0.065000	0.601990	
mm_71970.1	chr8	70534917	70535117	+	1	NA	NA	NA	-4658	NM_007924	13716	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0.005000	0.592040	
mm_675.1	chr1	40465974	40466174	+	1	NA	NA	NA	68	NM_008365	16182	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0.015000	0.482587	
mm_116453.1	chr13	43250729	43250929	-	1	NA	NA	NA	53343	NM_001033399	328232	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	0.025000	0.606965	
mm_652.1	chr1	40429475	40429675	+	1	NA	NA	NA	5	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.005000	0.358209	
mm_71857.1	chr8	68906262	68906462	+	1	NA	NA	NA	25807	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.373134	
mm_169437.1	chr14	56261121	56261321	-	1	NA	NA	NA	1113	NM_013542	14939	Mm.14874	NM_013542	ENSMUSG00000015437	Gzmb	AI553453|CCP-1/C11|CCP1|Ctla-1|Ctla1|GZB	granzyme B	protein-coding	0.025000	0.527363	
mm_80202.1	chr9	72408490	72408690	+	1	NA	NA	NA	-29939	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.020000	0.437811	
mm_61392.1	chr7	73127773	73127973	+	1	NA	NA	NA	-25805	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	0.005000	0.402985	
mm_159368.1	chr3	88493174	88493374	-	1	NA	NA	NA	38	NM_019390	16905	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.065000	0.706468	
mm_112705.1	chr13	18717203	18717403	+	1	NA	NA	NA	11	NM_172120	218035	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0.050000	0.577114	
mm_64631.1	chr7	3693443	3693643	-	1	NA	NA	NA	-18	NM_029934	77582	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	0.045000	0.527363	
mm_115170.1	chr13	108044359	108044559	+	1	NA	NA	NA	-15	NM_001048250	75616	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	0.100000	0.696517	
mm_96604.1	chr11	69091320	69091520	+	1	NA	NA	NA	2892	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.015000	0.517413	
mm_60919.1	chr7	46838366	46838566	+	1	NA	NA	NA	-7338	NM_010699	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.020000	0.587065	
mm_124950.1	chr15	12824728	12824928	+	1	NA	NA	NA	13	NM_001130149	14000	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	0.090000	0.611940	
mm_151813.1	chr19	5488866	5489066	-	1	NA	NA	NA	-630	NM_027877	71711	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	0.035000	0.552239	
mm_136409.1	chr16	93794740	93794940	-	1	NA	NA	NA	-37281	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.010000	0.542289	
mm_92802.1	chr10	81365693	81365893	-	1	NA	NA	NA	27	NM_001014836	432479	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.030000	0.601990	
mm_31194.1	chr4	43631327	43631527	+	1	NA	NA	NA	-508	NM_173788	230103	Mm.103477	NM_173788	ENSMUSG00000028469	Npr2	GC-B|GC-B2|GC-B3|cn|mNPR-B|pwe	natriuretic peptide receptor 2	protein-coding	0.170000	0.840796	
mm_97280.1	chr11	76089335	76089535	+	1	NA	NA	NA	-61653	NM_029658	76566	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	0.010000	0.363184	
mm_153036.1	chr19	31910372	31910572	-	1	NA	NA	NA	41711	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.010000	0.462687	
mm_3794.1	chr1	157412591	157412791	+	1	NA	NA	NA	-96	NM_177644	226525	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	0.095000	0.616915	
mm_169182.1	chr13	65817807	65818007	+	1	NA	NA	NA	-295546	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.000000	0.477612	
mm_70012.1	chr7	142443980	142444180	-	1	NA	NA	NA	1612	NM_009405	21953	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	0.015000	0.567164	
mm_9207.1	chr1	171229725	171229925	-	1	NA	NA	NA	4524	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.015000	0.492537	
mm_8632.1	chr1	156303501	156303701	-	1	NA	NA	NA	5	NM_001277730	214575	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	0.125000	0.781095	
mm_68164.1	chr7	103812490	103812690	-	1	NA	NA	NA	1333	NM_016956	15130	Mm.288567	NM_016956		Hbb-b2	AI036344|Hbb2|Hbbt2|beta2	hemoglobin, beta adult minor chain	protein-coding	0.000000	0.398010	
mm_39626.1	chr5	24427413	24427613	+	1	NA	NA	NA	-8	NM_001253892	20535	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0.050000	0.611940	
mm_148385.1	chr19	3352408	3352608	+	1	NA	NA	NA	29207	NM_013495	12894	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0.020000	0.547264	
mm_105164.1	chr11	101675381	101675581	-	1	NA	NA	NA	9940	NM_025404	80981	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0.000000	0.487562	
mm_27577.1	chr3	58822273	58822473	-	1	NA	NA	NA	62839	NM_153386	229320	Mm.131502	NM_153384	ENSMUSG00000043850	Clrn1	A130002D11Rik|USH3|Ush3a|clarin-1	clarin 1	protein-coding	0.010000	0.512438	
mm_159814.1	chr5	120861326	120861526	+	1	NA	NA	NA	4	NM_145228	246729	Mm.115351	NM_145228	ENSMUSG00000001168	Oas1h	-	2'-5' oligoadenylate synthetase 1H	protein-coding	0.020000	0.532338	-35(GGATATAAGAGG,-,0.00)
mm_132384.1	chr16	34929180	34929380	+	1	NA	NA	NA	10049	NR_040536	76649	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.025000	0.422886	0(GCTTTTCGAGAC,+,0.00)
mm_154181.1	chr19	58792725	58792925	-	1	NA	NA	NA	1589	NM_026208	67507	Mm.27027	NM_026208	ENSMUSG00000026931	1700019N19Rik	-	RIKEN cDNA 1700019N19 gene	protein-coding	0.005000	0.487562	
mm_143145.1	chr17	57221822	57222022	-	1	NA	NA	NA	-4694	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.000000	0.532338	
mm_159539.1	chr4	88522749	88522949	-	1	NA	NA	NA	-55	NM_010510	15977	Mm.1245	NM_010510	ENSMUSG00000048806	Ifnb1	IFN-beta|IFNB|Ifb	interferon beta 1, fibroblast	protein-coding	0.010000	0.492537	-30(CCTTATAAATAG,+,0.00)
mm_122592.1	chr14	50917229	50917429	-	1	NA	NA	NA	7564	NM_133676	66246	Mm.274791	NM_133676	ENSMUSG00000006289	Osgep	1500019L24Rik|GCPL-1|PRSMG1	O-sialoglycoprotein endopeptidase	protein-coding	0.020000	0.472637	
mm_17608.1	chr2	30920193	30920393	-	1	NA	NA	NA	-16996	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.020000	0.477612	
mm_38260.1	chr4	136880238	136880438	-	1	NA	NA	NA	5839	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.010000	0.532338	
mm_15257.1	chr2	154892865	154893065	+	1	NA	NA	NA	-59	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.110000	0.587065	19(GGCTAGAAAAGA,-,0.00)
mm_70104.1	chr7	142661210	142661410	-	1	NA	NA	NA	-39	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.060000	0.552239	
mm_156285.1	chrX	136837247	136837447	+	1	NA	NA	NA	14601	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.323383	
mm_15580.1	chr2	158700872	158701072	+	1	NA	NA	NA	33837	NM_001159662	228852	Mm.150540	NM_153089	ENSMUSG00000037754	Ppp1r16b	ANKRD4|C130078N17Rik|TIMAP|Wdt4	protein phosphatase 1, regulatory (inhibitor) subunit 16B	protein-coding	0.015000	0.407960	
mm_149705.1	chr19	21471241	21471441	+	1	NA	NA	NA	1320	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.005000	0.442786	
mm_25935.1	chr3	131466441	131466641	+	1	NA	NA	NA	-98227	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.005000	0.542289	
mm_79882.1	chr9	65235782	65235982	+	1	NA	NA	NA	21192	NM_177460	214424	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.005000	0.492537	
mm_84422.1	chr9	65691295	65691495	-	1	NA	NA	NA	14847	NM_001301307	18247	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0.000000	0.368159	
mm_103560.1	chr11	77722587	77722787	-	1	NA	NA	NA	2606	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.025000	0.477612	
mm_83095.1	chr9	40321150	40321350	-	1	NA	NA	NA	-12222	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.020000	0.537313	
mm_155801.1	chrX	99042509	99042709	+	1	NA	NA	NA	28	NM_199018	236920	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	0.065000	0.587065	
mm_70651.1	chr8	14354356	14354556	+	1	NA	NA	NA	258581	NM_172910	244310	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	discs, large (Drosophila) homolog-associated protein 2	protein-coding	0.020000	0.482587	
mm_1275.1	chr1	63445793	63445993	+	1	NA	NA	NA	2	NM_011780	23792	Mm.124892	NM_011780	ENSMUSG00000025964	Adam23	AW046396|MDC3	a disintegrin and metallopeptidase domain 23	protein-coding	0.140000	0.756219	
mm_10952.1	chr2	25652907	25653107	+	1	NA	NA	NA	-111	NM_033145	78076	Mm.196708	NM_033145	ENSMUSG00000036449	Lcn8	9230106L18Rik|EP17|Lcn5|mEP17	lipocalin 8	protein-coding	0.000000	0.482587	
mm_91722.1	chr10	44464105	44464305	-	1	NA	NA	NA	-5457	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.015000	0.447761	
mm_82057.1	chr9	122682078	122682278	+	1	NA	NA	NA	-698	NR_029819	387156		NR_029819	ENSMUSG00000065414	Mir138-1	Mirn138|Mirn138-1|mir-138-1	microRNA 138-1	ncRNA	0.000000	0.393035	
mm_125105.1	chr15	27771003	27771203	+	1	NA	NA	NA	-89561	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.025000	0.512438	
mm_8293.1	chr1	143344484	143344684	-	1	NA	NA	NA	-296113	NM_020025	26878	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.005000	0.373134	
mm_42063.1	chr5	109055548	109055748	+	1	NA	NA	NA	3804	NM_001104622	384219	Mm.469885	NM_001104622	ENSMUSG00000091450	Vmn2r11	EG384219	vomeronasal 2, receptor 11	protein-coding	0.010000	0.457711	52(CCTTTTCAGGTG,+,0.00)
mm_114795.1	chr13	89584580	89584780	+	1	NA	NA	NA	44044	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.015000	0.442786	
mm_62359.1	chr7	100499270	100499470	+	1	NA	NA	NA	6012	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.015000	0.542289	
mm_49768.1	chr6	34863130	34863330	+	1	NA	NA	NA	84	NM_197986	68487	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.025000	0.552239	
mm_146992.1	chr18	34221546	34221746	-	1	NA	NA	NA	126	NR_040534	633395	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	ENSMUSG00000073607	ribosomal protein L29 pseudogene	pseudo	0.025000	0.492537	69(TTTTTTAAAGGT,+,0.00)
mm_165551.1	chr3	9997459	9997659	+	1	NA	NA	NA	-15026	NM_001272097	16592	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0.005000	0.482587	
mm_36235.1	chr4	63154040	63154240	-	1	NA	NA	NA	32	NM_007443	11699	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.015000	0.547264	
mm_125442.1	chr15	46324473	46324673	+	1	NA	NA	NA	-12	NR_045509	71120	Mm.158571	NR_045509	ENSMUSG00000099751	1700022A22Rik	4933413D07Rik	RIKEN cDNA 1700022A22 gene	ncRNA	0.015000	0.527363	
mm_82574.1	chr9	21131065	21131265	-	1	NA	NA	NA	110	NM_018793	54721	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.050000	0.641791	
mm_102214.1	chr11	54908530	54908730	-	1	NA	NA	NA	5776	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.025000	0.542289	
mm_168748.1	chr12	115593493	115593693	-	1	NA	NA	NA	102201	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.005000	0.457711	
mm_171931.1	chr5	6401057	6401257	-	1	NA	NA	NA	-651840	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.015000	0.407960	
mm_7721.1	chr1	130661497	130661697	-	1	NA	NA	NA	21	NM_007576	12269	Mm.306720	NM_007576	ENSMUSG00000026405	C4bp	AI195242|C4bpa	complement component 4 binding protein	protein-coding	0.015000	0.462687	
mm_68100.1	chr7	102015721	102015921	-	1	NA	NA	NA	2334	NM_010531	16068	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.005000	0.527363	
mm_98567.1	chr11	95384832	95385032	+	1	NA	NA	NA	10	NM_016752	110172	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	Ugalt2	solute carrier family 35, member B1	protein-coding	0.115000	0.661692	
mm_117994.1	chr13	100467112	100467312	-	1	NA	NA	NA	-14348	NM_008670	17940	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.005000	0.373134	
mm_145249.1	chr18	52331433	52331633	+	1	NA	NA	NA	-3	NM_026286	67634	Mm.179144	NM_026286	ENSMUSG00000024510	Ftmt	4930447C24Rik|FerH|Fth3|MtF	ferritin mitochondrial	protein-coding	0.035000	0.507463	
mm_126325.1	chr15	79878878	79879078	+	1	NA	NA	NA	-13430	NM_001160415	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.010000	0.517413	
mm_77592.1	chr8	123891812	123892012	-	1	NA	NA	NA	2863	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.090000	0.552239	
mm_40442.1	chr5	53591154	53591354	+	1	NA	NA	NA	768	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.050000	0.582090	
mm_32205.1	chr4	101507692	101507892	+	1	NA	NA	NA	-184	NM_001164585	72685	Mm.76494	NM_198412	ENSMUSG00000028528	Dnajc6	2810027M23Rik|mKIAA0473	DnaJ heat shock protein family (Hsp40) member C6	protein-coding	0.020000	0.482587	
mm_109333.1	chr12	109580914	109581114	+	1	NA	NA	NA	781	NR_030573	100124466		NR_030573	ENSMUSG00000077025	Mir493	Mirn493|mmu-mir-493	microRNA 493	ncRNA	0.000000	0.378109	
mm_136923.1	chr17	13846078	13846278	+	1	NA	NA	NA	-84784	NM_022311	21646	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0.010000	0.467662	
mm_158704.1	chrX	162125747	162125947	-	1	NA	NA	NA	33594	NM_001081052	195727	Mm.336313	NM_001081052	ENSMUSG00000059493	Nhs	Gm389|Gm48|Nhs1|Xcat	Nance-Horan syndrome (human)	protein-coding	0.010000	0.407960	
mm_31873.1	chr4	80834206	80834406	+	1	NA	NA	NA	93	NM_001282015	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.005000	0.507463	
mm_905.1	chr1	53824092	53824292	+	1	NA	NA	NA	-25232	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.015000	0.432836	
mm_33360.1	chr4	129490769	129490969	+	1	NA	NA	NA	-99	NM_080442	58864	Mm.143802	NM_080442	ENSMUSG00000000411	Tssk3	1700014N07Rik|4930594I21Rik|Stk22c|Stk22d|Tsk-3|Tssk-3|Tssk3b	testis-specific serine kinase 3	protein-coding	0.030000	0.562189	
mm_30888.1	chr4	32252174	32252374	+	1	NA	NA	NA	-165161	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.010000	0.422886	
mm_121320.1	chr14	111675426	111675626	+	1	NA	NA	NA	411	NM_198865	75409	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0.080000	0.671642	
mm_154501.1	chrM	11721	11921	-	1	NA	NA	NA	NA	NA									0.000000	0.303483	
mm_113968.1	chr13	51645281	51645481	+	1	NA	NA	NA	149	NM_025415	66197	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0.100000	0.606965	
mm_146206.1	chr18	76856041	76856241	+	1	NA	NA	NA	-264	NM_001109743	664805	Mm.329543	NM_001109743	ENSMUSG00000091519	Skor2	Corl2|EG664805|Fussel18|Gm7348	SKI family transcriptional corepressor 2	protein-coding	0.065000	0.631841	-80(CCTTTAATGTGG,+,0.00)
mm_120707.1	chr14	71251174	71251374	+	1	NA	NA	NA	1	NR_046076	100043132	Mm.399336	NR_046075		Gm4251	-	predicted gene 4251	ncRNA	0.000000	0.417910	
mm_62013.1	chr7	91344413	91344613	+	1	NA	NA	NA	253727	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.005000	0.472637	
mm_86655.1	chr10	17724225	17724425	+	1	NA	NA	NA	1097	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.025000	0.592040	
mm_154239.1	chr19	60580919	60581119	-	1	NA	NA	NA	4	NM_001172097	78832	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	0.065000	0.611940	
mm_144348.1	chr18	15195156	15195356	+	1	NA	NA	NA	-43810	NM_134112	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.010000	0.422886	
mm_26119.1	chr3	137864450	137864650	+	1	NA	NA	NA	63	NM_016750	51788	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0.110000	0.656716	5(CAGTATAAAGGG,-,0.00)
mm_55107.1	chr6	50261849	50262049	-	1	NA	NA	NA	-180	NM_018769	54722	Mm.248361	NM_018769	ENSMUSG00000029821	Dfna5	2310037D07Rik|4932441K13Rik|Dfna5h|EG14210|Fin15	deafness, autosomal dominant 5 (human)	protein-coding	0.045000	0.621891	
mm_27333.1	chr3	50398432	50398632	-	1	NA	NA	NA	45081	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.412935	
mm_79610.1	chr9	58614270	58614470	+	1	NA	NA	NA	32130	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.005000	0.343284	
mm_6113.1	chr1	64121097	64121297	-	1	NA	NA	NA	192	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.015000	0.507463	
mm_18990.1	chr2	76863407	76863607	-	1	NA	NA	NA	119040	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.020000	0.437811	
mm_50340.1	chr6	48537582	48537782	+	1	NA	NA	NA	113	NM_133764	76252	Mm.30214	NM_133764	ENSMUSG00000039347	Atp6v0e2	0610006O14Rik|NM9.2	ATPase, H+ transporting, lysosomal V0 subunit E2	protein-coding	0.075000	0.611940	
mm_125960.1	chr15	76266489	76266689	+	1	NA	NA	NA	-1500	NM_028852	74281	Mm.159156	NM_028852	ENSMUSG00000049653	Spatc1	1700084J23Rik|speriolin	spermatogenesis and centriole associated 1	protein-coding	0.020000	0.442786	
mm_162272.1	chr1	10315178	10315378	+	1	NA	NA	NA	-82608	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.010000	0.467662	
mm_117571.1	chr13	85289113	85289313	-	1	NA	NA	NA	273	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.135000	0.706468	
mm_118102.1	chr13	103920298	103920498	-	1	NA	NA	NA	188	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.100000	0.696517	
mm_24687.1	chr3	94974663	94974863	+	1	NA	NA	NA	32	NM_001293716	107650	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase, catalytic, beta polypeptide	protein-coding	0.050000	0.562189	
mm_98888.1	chr11	97836261	97836461	+	1	NA	NA	NA	-4419	NM_001080935	68127	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0.010000	0.517413	
mm_20238.1	chr2	126321370	126321570	-	1	NA	NA	NA	169329	NM_026981	69185	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	0.005000	0.398010	
mm_152240.1	chr19	8712895	8713095	-	1	NA	NA	NA	902	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.030000	0.547264	
mm_103248.1	chr11	70812447	70812647	-	1	NA	NA	NA	14	NM_001045526	327957	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0.010000	0.552239	
mm_155980.1	chrX	106126862	106127062	+	1	NA	NA	NA	-16313	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.000000	0.248756	
mm_158028.1	chrX	96293361	96293561	-	1	NA	NA	NA	-23	NM_177789	278180	Mm.26781	NM_177789	ENSMUSG00000044206	Vsig4	A530061A11|BC025105|CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding	0.015000	0.442786	
mm_1074.1	chr1	59449178	59449378	+	1	NA	NA	NA	-32869	NM_008057	14369	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.015000	0.547264	
mm_136490.1	chr16	96124844	96125044	-	1	NA	NA	NA	2781	NM_008251	15312	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	0.015000	0.427861	
mm_55394.1	chr6	60687211	60687411	-	1	NA	NA	NA	141693	NM_001042451	20617	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alphaSYN	synuclein, alpha	protein-coding	0.015000	0.353234	
mm_165659.1	chr3	87905981	87906181	+	1	NA	NA	NA	-240	NM_008231	15191	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0.065000	0.686567	
mm_161335.1	chr14	51007651	51007851	+	1	NA	NA	NA	0	NM_001162863	75019	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	0.010000	0.442786	
mm_118060.1	chr13	102706626	102706826	-	1	NA	NA	NA	13168	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.010000	0.611940	
mm_173353.1	chrY	90813860	90814060	+	1	NA	NA	NA	25446	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.457711	
mm_104338.1	chr11	94053464	94053664	-	1	NA	NA	NA	9359	NM_001025429	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.005000	0.487562	
mm_159875.1	chr5	150517989	150518189	-	1	NA	NA	NA	70	NM_001159693	545824	Mm.380068	NM_001159693	ENSMUSG00000056586	Zar1l	XM_359419	zygote arrest 1-like	protein-coding	0.010000	0.547264	
mm_109478.1	chr12	111423156	111423356	+	1	NA	NA	NA	5811	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.005000	0.497512	
mm_137474.1	chr17	26715573	26715773	+	1	NA	NA	NA	23	NM_029870	77128	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	0.125000	0.701493	
mm_35732.1	chr4	45011969	45012169	-	1	NA	NA	NA	343	NM_001163284	230119	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0.105000	0.701493	
mm_6186.1	chr1	65110048	65110248	-	1	NA	NA	NA	-6785	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.035000	0.567164	
mm_60795.1	chr7	45587847	45588047	+	1	NA	NA	NA	-12771	NR_038165	71661	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0.020000	0.552239	-81(GCTTCTAAAAGA,-,0.00)
mm_15127.1	chr2	153825984	153826184	+	1	NA	NA	NA	45000	NM_001305048	76407	Mm.33629	NM_029599	ENSMUSG00000027480	Sun5	1700021O15Rik|SPAG4L-2|SRG4|Spag4l	Sad1 and UNC84 domain containing 5	protein-coding	0.100000	0.611940	
mm_102237.1	chr11	54962828	54963028	-	1	NA	NA	NA	12	NM_021327	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.020000	0.606965	
mm_83141.1	chr9	40455327	40455527	-	1	NA	NA	NA	337	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.085000	0.661692	
mm_132129.1	chr16	31754728	31754928	+	1	NA	NA	NA	478	NM_001252436	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.030000	0.522388	
mm_32945.1	chr4	119539575	119539775	+	1	NA	NA	NA	14	NM_172699	230700	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	0.155000	0.796020	
mm_6691.1	chr1	80710298	80710498	-	1	NA	NA	NA	-45046	NM_001285927	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.005000	0.393035	
mm_163814.1	chr14	19416284	19416484	+	1	NA	NA	NA	186203	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.010000	0.343284	
mm_134327.1	chr16	16358856	16359056	-	1	NA	NA	NA	75	NM_152816	74006	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	0.080000	0.701493	
mm_30216.1	chr3	145018589	145018789	-	1	NA	NA	NA	14087	NM_017474	23844	Mm.33483	NM_017474	ENSMUSG00000028255	Clca1	Clca2|Clca3|gob-5|gob5	chloride channel accessory 1	protein-coding	0.040000	0.437811	
mm_110266.1	chr12	31950092	31950292	-	1	NA	NA	NA	343	NM_177993	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.090000	0.616915	
mm_77540.1	chr8	123042187	123042387	-	1	NA	NA	NA	-3	NM_001081379	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.150000	0.771144	
mm_50138.1	chr6	41543102	41543302	+	1	NA	NA	NA	21426	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.015000	0.517413	
mm_97844.1	chr11	83065215	83065415	+	1	NA	NA	NA	203	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.000000	0.487562	
mm_25978.1	chr3	133092491	133092691	+	1	NA	NA	NA	736	NM_027927	71793	Mm.246726	NM_027927	ENSMUSG00000028016	Ints12	1110020M19Rik|2810027J24Rik|4930529N21Rik|A230056J18Rik|AI666778|Phf22|int12	integrator complex subunit 12	protein-coding	0.010000	0.427861	
mm_97256.1	chr11	75758745	75758945	+	1	NA	NA	NA	25958	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.000000	0.437811	
mm_15926.1	chr2	165067091	165067291	+	1	NA	NA	NA	11555	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.005000	0.482587	
mm_59219.1	chr7	24608254	24608454	+	1	NA	NA	NA	-2974	NM_001102613	232970	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|ENSMUSG00000061511|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	0.015000	0.532338	
mm_48052.1	chr5	136510629	136510829	-	1	NA	NA	NA	55252	NM_001291239	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.015000	0.363184	
mm_162935.1	chr10	127368848	127369048	+	1	NA	NA	NA	1600	NM_010565	16325	Mm.2594	NM_010565	ENSMUSG00000025405	Inhbc	-	inhibin beta-C	protein-coding	0.010000	0.512438	
mm_165425.1	chr2	151979983	151980183	-	1	NA	NA	NA	136	NM_146127	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.070000	0.661692	
mm_58288.1	chr6	145863555	145863755	-	1	NA	NA	NA	1765	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.085000	0.641791	
mm_55470.1	chr6	68768498	68768698	-	1	NA	NA	NA	558576	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.020000	0.517413	
mm_170600.1	chr19	5802359	5802559	-	1	NA	NA	NA	213	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.308458	
mm_127778.1	chr15	3523117	3523317	-	1	NA	NA	NA	58625	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.000000	0.452736	
mm_154496.1	chrM	11251	11451	-	1	NA	NA	NA	NA	NA									0.010000	0.313433	
mm_79360.1	chr9	54286387	54286587	+	1	NA	NA	NA	1	NM_177350	235379	Mm.123549	NM_177350	ENSMUSG00000046167	Gldn	CRG-L2|Clom|Colm|Crgl2|Crlg2	gliomedin	protein-coding	0.080000	0.696517	
mm_105959.1	chr11	115420386	115420586	-	1	NA	NA	NA	360	NM_183285	70382	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	0.085000	0.691542	
mm_65814.1	chr7	29113804	29114004	-	1	NA	NA	NA	11247	NM_009109	20190	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	0.020000	0.487562	
mm_137925.1	chr17	32506388	32506588	+	1	NA	NA	NA	26	NM_001101445	208285	Mm.311422	NM_001101445	ENSMUSG00000091586	Cyp4f17	EG208285	cytochrome P450, family 4, subfamily f, polypeptide 17	protein-coding	0.065000	0.636816	
mm_71406.1	chr8	46470995	46471195	+	1	NA	NA	NA	58	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.120000	0.716418	51(CCTTAAATAGCA,+,0.00)
mm_152145.1	chr19	7202247	7202447	-	1	NA	NA	NA	3937	NM_134150	107260	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	0.010000	0.477612	
mm_148335.1	chr18	84301197	84301397	-	1	NA	NA	NA	213139	NM_146090	225791	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.005000	0.328358	
mm_7394.1	chr1	112957454	112957654	-	1	NA	NA	NA	-1092636	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0.000000	0.318408	
mm_27887.1	chr3	79181264	79181464	-	1	NA	NA	NA	-31555	NR_045502	70924	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0.035000	0.552239	
mm_118411.1	chr14	7791319	7791519	+	1	NA	NA	NA	-26538	NM_001081427	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.070000	0.562189	-86(TCATTTAGAGCG,+,0.00)
mm_129652.1	chr15	80798359	80798559	-	1	NA	NA	NA	-151	NM_177124	213988	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.040000	0.482587	
mm_129220.1	chr15	76576650	76576850	-	1	NA	NA	NA	391	NR_073123	268822	Mm.181624	NM_172960	ENSMUSG00000022550	Adck5	A230108P17	aarF domain containing kinase 5	protein-coding	0.020000	0.557214	
mm_131832.1	chr16	22959067	22959267	+	1	NA	NA	NA	8095	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.005000	0.442786	
mm_172788.1	chr9	106476483	106476683	-	1	NA	NA	NA	366	NM_001311150	235587	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	0.020000	0.522388	
mm_161266.1	chr14	6875122	6875322	-	1	NA	NA	NA	-118165	NM_001309401	100041151	Mm.396155	NM_001309401	ENSMUSG00000091754	Gm3636	100042043	predicted gene 3636	protein-coding	0.000000	0.462687	
mm_73098.1	chr8	94568248	94568448	+	1	NA	NA	NA	33378	NM_028221	102122	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	0.015000	0.542289	
mm_152061.1	chr19	6531887	6532087	-	1	NA	NA	NA	11083	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.080000	0.631841	
mm_126749.1	chr15	85736247	85736447	+	1	NA	NA	NA	571	NM_011144	19013	Mm.212789	NM_011144	ENSMUSG00000022383	Ppara	4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar	peroxisome proliferator activated receptor alpha	protein-coding	0.035000	0.606965	
mm_115565.1	chr13	9764869	9765069	-	1	NA	NA	NA	-13	NM_001347473	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.160000	0.796020	
mm_22507.1	chr3	7503363	7503563	+	1	NA	NA	NA	37	NM_173181	67306	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	0.105000	0.706468	
mm_113687.1	chr13	42866343	42866543	+	1	NA	NA	NA	196	NM_001302636	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.030000	0.611940	
mm_47852.1	chr5	134552086	134552286	-	1	NA	NA	NA	248	NM_001039162	269713	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.135000	0.701493	
mm_19569.1	chr2	101628930	101629130	-	1	NA	NA	NA	-44	NM_026592	68170	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding	0.025000	0.452736	62(CCTTATAGGCTG,+,0.00)
mm_119030.1	chr14	30131453	30131653	+	1	NA	NA	NA	108920	NM_175343	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.010000	0.497512	
mm_118270.1	chr13	112595086	112595286	-	1	NA	NA	NA	-14524	NM_139299	218624	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	0.035000	0.402985	
mm_19084.1	chr2	78972930	78973130	-	1	NA	NA	NA	103983	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.010000	0.442786	
mm_153282.1	chr19	37210618	37210818	-	1	NA	NA	NA	3173	NM_001164336	69104	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	0.010000	0.472637	
mm_173362.1	chrY	90819533	90819733	+	1	NA	NA	NA	19773	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.487562	
mm_48854.1	chr5	149636143	149636343	-	1	NA	NA	NA	72	NM_013559	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.075000	0.611940	
mm_77547.1	chr8	123236081	123236281	-	1	NA	NA	NA	28	NM_030176	78779	Mm.41459	NM_030176	ENSMUSG00000033594	Spata2l	2610039E05Rik|AI648233|mKIAA4138	spermatogenesis associated 2-like	protein-coding	0.070000	0.666667	
mm_152442.1	chr19	10759973	10760173	-	1	NA	NA	NA	19126	NR_027805	403202	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0.015000	0.527363	
mm_152786.1	chr19	21457401	21457601	-	1	NA	NA	NA	15160	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.000000	0.412935	
mm_22994.1	chr3	34019836	34020036	+	1	NA	NA	NA	-143	NM_001113189	14359	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0.170000	0.825871	
mm_78958.1	chr9	45152838	45153038	+	1	NA	NA	NA	13896	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.005000	0.383085	
mm_94089.1	chr10	128517198	128517398	-	1	NA	NA	NA	-5268	NR_105881	102465552		NR_105881	ENSMUSG00000099292	Mir6916	Gm27721|mmu-mir-6916	microRNA 6916	ncRNA	0.020000	0.542289	
mm_75253.1	chr8	40511166	40511366	-	1	NA	NA	NA	488	NM_001271543	18983	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0.080000	0.661692	
mm_133759.1	chr16	94459860	94460060	+	1	NA	NA	NA	66669	NM_007834	13185	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	Down syndrome critical region gene 3	protein-coding	0.020000	0.557214	
mm_112965.1	chr13	21183674	21183874	+	1	NA	NA	NA	3843	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.025000	0.502488	
mm_70905.1	chr8	25640825	25641025	+	1	NA	NA	NA	348	NM_001081269	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.010000	0.432836	
mm_54185.1	chr6	24092260	24092460	-	1	NA	NA	NA	75732	NM_019481	55961	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0.000000	0.358209	
mm_36617.1	chr4	89294510	89294710	-	1	NA	NA	NA	9	NM_009877	12578	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin-dependent kinase inhibitor 2A	protein-coding	0.115000	0.721393	
mm_82351.1	chr9	13826979	13827179	-	1	NA	NA	NA	-26	NR_037622	74360	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding	0.080000	0.597015	
mm_56982.1	chr6	120364223	120364423	-	1	NA	NA	NA	46	NR_045558	67200	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	0.070000	0.542289	
mm_48034.1	chr5	136268699	136268899	-	1	NA	NA	NA	-23859	NM_018825	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.020000	0.368159	
mm_108274.1	chr12	78861948	78862148	+	1	NA	NA	NA	-24	NM_026114	13665	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	0.090000	0.616915	
mm_54428.1	chr6	33992274	33992474	-	1	NA	NA	NA	-37074	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.020000	0.457711	
mm_23360.1	chr3	55242443	55242643	+	1	NA	NA	NA	17	NM_001195538	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.065000	0.641791	
mm_123941.1	chr14	73375879	73376079	-	1	NA	NA	NA	9292	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.005000	0.323383	
mm_37833.1	chr4	132048866	132049066	-	1	NA	NA	NA	112	NM_001128606	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.140000	0.761194	
mm_13933.1	chr2	121015838	121016038	+	1	NA	NA	NA	7530	NM_010761	17151	Mm.7838	NM_010761	ENSMUSG00000023572	Ccndbp1	AU022347|DIP1|GCIP|Maid|SECC-8|SSEC-8	cyclin D-type binding-protein 1	protein-coding	0.005000	0.422886	
mm_45968.1	chr5	90468503	90468703	-	1	NA	NA	NA	7733	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.512438	
mm_168882.1	chr12	43175373	43175573	+	1	NA	NA	NA	1034595	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.065000	0.661692	
mm_120552.1	chr14	67793294	67793494	+	1	NA	NA	NA	48213	NR_133010	14714	Mm.358309	NM_008145	ENSMUSG00000015812	Gnrh1	Gnrh|Gnrh2|LHRH|Lhrh1|Lnrh|hpg	gonadotropin releasing hormone 1	protein-coding	0.010000	0.472637	
mm_35007.1	chr4	3089707	3089907	-	1	NA	NA	NA	-82276	NM_001167534	100312470	Mm.480297	NM_001167534	ENSMUSG00000094798	Vmn1r2	Gm11776|OTTMUSG00000004179	vomeronasal 1 receptor 2	protein-coding	0.015000	0.368159	
mm_129740.1	chr15	82212738	82212938	-	1	NA	NA	NA	-23	NM_001207021	435145	Mm.41289	NM_001207021	ENSMUSG00000096883	Shisa8	Orf26|ckamp39	shisa family member 8	protein-coding	0.160000	0.810945	
mm_62416.1	chr7	101317003	101317203	+	1	NA	NA	NA	-4216	NM_019990	56018	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	0.015000	0.517413	
mm_60918.1	chr7	46832349	46832549	+	1	NA	NA	NA	-13355	NM_010699	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.020000	0.507463	
mm_168557.1	chr1	166141853	166142053	+	1	NA	NA	NA	11493	NM_021610	59290	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197	glycoprotein A33 (transmembrane)	protein-coding	0.035000	0.482587	
mm_90490.1	chr10	128015142	128015342	+	1	NA	NA	NA	27	NM_008921	19075	Mm.2903	NM_008921	ENSMUSG00000025395	Prim1	AI324982	DNA primase, p49 subunit	protein-coding	0.070000	0.582090	
mm_50949.1	chr6	58643902	58644102	+	1	NA	NA	NA	47330	NM_011920	26357	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP-binding cassette, sub-family G (WHITE), member 2	protein-coding	0.005000	0.447761	
mm_4748.1	chr1	182163240	182163440	+	1	NA	NA	NA	-5242	NM_001166728	625823	Mm.479992	NM_001166728	ENSMUSG00000091013	Vmn1r1	EG625823|Gm6628	vomeronasal 1 receptor 1	protein-coding	0.000000	0.422886	
mm_101455.1	chr11	30248406	30248606	-	1	NA	NA	NA	-28734	NM_175836	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.005000	0.298507	
mm_109034.1	chr12	104100993	104101193	+	1	NA	NA	NA	-20	NM_172953	268591	Mm.73172	NM_172953	ENSMUSG00000041550	Serpina5	4933415L04|PAI-3|Pci	serine (or cysteine) peptidase inhibitor, clade A, member 5	protein-coding	0.025000	0.507463	-19(CCTTTTATCGGG,+,0.00)
mm_110359.1	chr12	40037561	40037761	-	1	NA	NA	NA	-285	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.130000	0.746269	
mm_74619.1	chr8	13027618	13027818	-	1	NA	NA	NA	1684	NM_010172	14068	Mm.4827	NM_010172	ENSMUSG00000031443	F7	AI132620|Cf7|FVII	coagulation factor VII	protein-coding	0.005000	0.432836	
mm_118418.1	chr14	7817884	7818084	+	1	NA	NA	NA	27	NM_134080	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.100000	0.656716	
mm_101467.1	chr11	30576820	30577020	-	1	NA	NA	NA	72476	NM_029344	75572	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	0.005000	0.378109	18(GAGTTTAAAAGC,-,0.00)
mm_24547.1	chr3	93393598	93393798	+	1	NA	NA	NA	-1	NM_009100	20129	Mm.1417	NM_009100	ENSMUSG00000041984	Rptn	-	repetin	protein-coding	0.000000	0.442786	-33(CCCTATAAATAG,-,0.00)
mm_123983.1	chr14	75592915	75593115	-	1	NA	NA	NA	101	NM_001164140	67926	Mm.23361	NM_026457	ENSMUSG00000034913	Spert	1700086N05Rik|AI596460|Nurit	spermatid associated	protein-coding	0.000000	0.427861	
mm_162321.1	chr1	39467826	39468026	-	1	NA	NA	NA	10821	NM_018775	54610	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.010000	0.432836	
mm_146490.1	chr18	90534805	90535005	+	1	NA	NA	NA	24751	NM_198295	67988	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.000000	0.338308	-74(CACTATATAGGC,-,0.00),-29(CCCTATATAGAG,+,0.00),-29(CCCTATATAGAG,-,0.00)
mm_114929.1	chr13	95707378	95707578	+	1	NA	NA	NA	10558	NM_010170	14064	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	0.010000	0.452736	
mm_46824.1	chr5	113188583	113188783	-	1	NA	NA	NA	-25370	NM_172884	243219	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.025000	0.532338	-53(GCCTATAAAAGA,-,0.00)
mm_135812.1	chr16	57420957	57421157	-	1	NA	NA	NA	67780	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.005000	0.353234	
mm_134240.1	chr16	12761928	12762128	-	1	NA	NA	NA	-49362	NR_040507	75493	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.015000	0.457711	
mm_100941.1	chr11	6528327	6528527	-	1	NA	NA	NA	333	NR_045893	100041286	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974|OTTMUSG00000005115	small nucleolar RNA host gene 15	ncRNA	0.040000	0.547264	
mm_7483.1	chr1	120993570	120993770	-	1	NA	NA	NA	-93735	NR_038008	98452	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0.000000	0.487562	
mm_149516.1	chr19	12436227	12436427	+	1	NA	NA	NA	8422	NM_019540	56093	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.005000	0.482587	
mm_161956.1	chr19	6934453	6934653	-	1	NA	NA	NA	-38	NM_008431	16528	Mm.12894	NM_008431	ENSMUSG00000024957	Kcnk4	MLZ-622|TRAAK|TRAAKt|Tex40	potassium channel, subfamily K, member 4	protein-coding	0.025000	0.606965	
mm_71276.1	chr8	40919549	40919749	+	1	NA	NA	NA	-6584	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.015000	0.422886	
mm_85508.1	chr9	106247343	106247543	-	1	NA	NA	NA	287	NM_001291835	11655	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	0.025000	0.597015	
mm_69147.1	chr7	127100504	127100704	-	1	NA	NA	NA	9168	NM_178901	101602	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	0.015000	0.482587	
mm_18358.1	chr2	58357698	58357898	-	1	NA	NA	NA	-40	NM_001111030	269275	Mm.77751	NM_001033369	ENSMUSG00000026834	Acvr1c	ACTR-IC|ACVRLK7|ALK7|Alk-7|C230097P10	activin A receptor, type IC	protein-coding	0.140000	0.776119	
mm_164780.1	chr18	5273215	5273415	-	1	NA	NA	NA	61124	NM_178722	240186	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.000000	0.378109	
mm_124313.1	chr14	103218880	103219080	-	1	NA	NA	NA	-119414	NM_001347600	50789	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.015000	0.512438	
mm_171458.1	chr4	145514860	145515060	+	1	NA	NA	NA	4201	NM_001324553	101056073	Mm.276881	NM_001324553	ENSMUSG00000078503	LOC101056073	-	zinc finger protein 501-like	protein-coding	0.005000	0.552239	
mm_113907.1	chr13	49341358	49341558	+	1	NA	NA	NA	-91	NM_001039179	76895	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	bicaudal D homolog 2 (Drosophila)	protein-coding	0.070000	0.582090	
mm_135616.1	chr16	52271247	52271447	-	1	NA	NA	NA	181734	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.318408	
mm_148758.1	chr19	6061145	6061345	+	1	NA	NA	NA	38	NM_013859	29805	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	0.105000	0.676617	
mm_84929.1	chr9	81633746	81633946	-	1	NA	NA	NA	-1294	NM_010482	15551	Mm.445308	NM_010482	ENSMUSG00000049511	Htr1b	-	5-hydroxytryptamine (serotonin) receptor 1B	protein-coding	0.050000	0.572139	
mm_86774.1	chr10	20148368	20148568	+	1	NA	NA	NA	-452	NM_008635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.070000	0.522388	
mm_160767.1	chr10	97607321	97607521	+	1	NA	NA	NA	216	NM_008438	16545	Mm.6228	NM_008438	ENSMUSG00000019932	Kera	CNA2|SLRR2B	keratocan	protein-coding	0.005000	0.308458	
mm_115104.1	chr13	103332485	103332685	+	1	NA	NA	NA	1907	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.005000	0.427861	
mm_165990.1	chr4	109156564	109156764	-	1	NA	NA	NA	-38628	NM_001134791	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.035000	0.502488	
mm_81214.1	chr9	107587549	107587749	+	1	NA	NA	NA	-69	NM_025903	15983	Mm.215335	NM_025903	ENSMUSG00000010048	Ifrd2	1810034A24Rik|AA470234|AI838527|SKMc15	interferon-related developmental regulator 2	protein-coding	0.085000	0.597015	
mm_55723.1	chr6	73470970	73471170	-	1	NA	NA	NA	-49	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.025000	0.467662	
mm_146096.1	chr18	73863603	73863803	+	1	NA	NA	NA	4318	NM_001305882	71263	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	0.035000	0.557214	
mm_47195.1	chr5	120773897	120774097	-	1	NA	NA	NA	3662	NM_145226	246727	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	0.040000	0.562189	
mm_58778.1	chr7	16061754	16061954	+	1	NA	NA	NA	-9991	NM_001347559	666528	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.140000	0.781095	
mm_128597.1	chr15	58135017	58135217	-	1	NA	NA	NA	-35	NM_027435	70472	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0.140000	0.691542	
mm_59185.1	chr7	24472500	24472700	+	1	NA	NA	NA	-9423	NM_153112	260299	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	0.015000	0.557214	
mm_170572.1	chr1	95238449	95238649	-	1	NA	NA	NA	-75079	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.065000	0.646766	
mm_2954.1	chr1	132477287	132477487	+	1	NA	NA	NA	20	NM_172517	213464	Mm.132868	NM_172517	ENSMUSG00000026439	Rbbp5	4933411J24Rik|C330016J05	retinoblastoma binding protein 5	protein-coding	0.085000	0.577114	
mm_58915.1	chr7	17672248	17672448	+	1	NA	NA	NA	35	NR_002857	232919	Mm.153893	NR_002857	ENSMUSG00000108558	Psg-ps1	AV036018|Cea-6|Cea6	pregnancy specific glycoprotein pseudogene 1	pseudo	0.005000	0.492537	
mm_169144.1	chr13	62161589	62161789	-	1	NA	NA	NA	31799	NM_001039239	630579	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 80	protein-coding	0.005000	0.368159	
mm_120430.1	chr14	65805739	65805939	+	1	NA	NA	NA	-72	NM_023209	52033	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	0.065000	0.527363	
mm_99741.1	chr11	106416701	106416901	+	1	NA	NA	NA	-34020	NM_010494	15896	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.005000	0.467662	75(CCTTATAAACAG,+,0.00)
mm_172586.1	chr8	123446048	123446248	+	1	NA	NA	NA	2889	NM_001281803	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.015000	0.522388	
mm_165243.1	chr2	67173873	67174073	+	1	NA	NA	NA	139	NM_001033477	383709	Mm.244520	NM_001033477		Gm1322	-	predicted gene 1322	protein-coding	0.020000	0.368159	
mm_102071.1	chr11	52261454	52261654	-	1	NA	NA	NA	21041	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.020000	0.562189	
mm_81794.1	chr9	115167144	115167344	+	1	NA	NA	NA	99965	NM_148958	74486	Mm.458474	NM_148958	ENSMUSG00000040875	Osbpl10	4933433D06Rik|C820004B04Rik|OPR-10|ORP-10	oxysterol binding protein-like 10	protein-coding	0.030000	0.671642	
mm_74296.1	chr8	125995340	125995540	+	1	NA	NA	NA	338	NM_008430	16525	Mm.10800	NM_008430	ENSMUSG00000033998	Kcnk1	AI788889|TWIK-1	potassium channel, subfamily K, member 1	protein-coding	0.110000	0.686567	
mm_146699.1	chr18	12955664	12955864	-	1	NA	NA	NA	-13923	NM_207530	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.040000	0.557214	
mm_129430.1	chr15	78493637	78493837	-	1	NA	NA	NA	1329	NM_008368	16185	Mm.35287	NM_008368	ENSMUSG00000068227	Il2rb	CD122|IL-15Rbeta|IL15Rbeta|Il-2/15Rbeta|Il-2Rbeta|p70	interleukin 2 receptor, beta chain	protein-coding	0.025000	0.572139	-1(CCTTTTCAGGGC,+,0.00)
mm_93335.1	chr10	99467568	99467768	-	1	NA	NA	NA	-141503	NR_038019	100504202	Mm.403801	NR_038019		Gm20110	-	predicted gene, 20110	ncRNA	0.020000	0.482587	
mm_98702.1	chr11	96303807	96304007	+	1	NA	NA	NA	395	NM_008268	15413	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	0.110000	0.706468	
mm_51381.1	chr6	74050133	74050333	+	1	NA	NA	NA	-579212	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.000000	0.348259	
mm_84236.1	chr9	62122583	62122783	-	1	NA	NA	NA	-89	NR_039595	100628602		NR_039595	ENSMUSG00000092696	Mir5133	mir-5133|mmu-mir-5133|mu-mir-5133	microRNA 5133	ncRNA	0.125000	0.701493	
mm_7862.1	chr1	132542844	132543044	-	1	NA	NA	NA	-4	NM_177129	21367	Mm.260861	NM_011531	ENSMUSG00000053024	Cntn2	D130012K04Rik|TAG-1|Tax	contactin 2	protein-coding	0.075000	0.671642	
mm_124425.1	chr14	118223822	118224022	-	1	NA	NA	NA	-12310	NR_131969	105245869	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	0.010000	0.547264	
mm_118782.1	chr14	24082042	24082242	+	1	NA	NA	NA	-6735	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.015000	0.547264	
mm_95633.1	chr11	53631976	53632176	+	1	NA	NA	NA	2626	NM_008355	16163	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	0.025000	0.522388	
mm_40236.1	chr5	37391917	37392117	+	1	NA	NA	NA	53539	NM_145920	68525	Mm.25506	NM_145920	ENSMUSG00000050248	Evc2	1110017L09Rik|Lbn|limbin	Ellis van Creveld syndrome 2	protein-coding	0.025000	0.582090	
mm_26519.1	chr3	145924241	145924441	+	1	NA	NA	NA	79	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.100000	0.701493	
mm_63031.1	chr7	121074541	121074741	+	1	NA	NA	NA	-111	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.010000	0.388060	-4(CCATTTAGAGTT,+,0.00)
mm_137727.1	chr17	29274004	29274204	+	1	NA	NA	NA	5316	NM_030561	80748	Mm.290116	NM_030561	ENSMUSG00000052712	BC004004	2400006G15Rik	cDNA sequence BC004004	protein-coding	0.030000	0.557214	
mm_155245.1	chrX	57223521	57223721	+	1	NA	NA	NA	11478	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.010000	0.482587	
mm_37220.1	chr4	117915052	117915252	-	1	NA	NA	NA	-153	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	0.110000	0.686567	
mm_72713.1	chr8	84995881	84996081	+	1	NA	NA	NA	5386	NM_001167991	170833	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	0.050000	0.611940	
mm_96772.1	chr11	69935750	69935950	+	1	NA	NA	NA	-49	NM_016875	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.160000	0.805970	
mm_50621.1	chr6	50125203	50125403	+	1	NA	NA	NA	15062	NM_001164733	56524	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.000000	0.407960	
mm_50274.1	chr6	45317731	45317931	+	1	NA	NA	NA	257770	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.000000	0.293532	
mm_35527.1	chr4	41275229	41275429	-	1	NA	NA	NA	-194	NM_026872	68926	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0.075000	0.537313	-7(GCTTTAATAGTG,+,0.00)
mm_53324.1	chr6	129221844	129222044	+	1	NA	NA	NA	16101	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.005000	0.368159	
mm_13737.1	chr2	118112956	118113156	+	1	NA	NA	NA	1180	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.055000	0.577114	
mm_10093.1	chr2	3327194	3327394	+	1	NA	NA	NA	5334	NM_001013376	227522	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0.010000	0.338308	
mm_161855.1	chr18	20247287	20247487	+	1	NA	NA	NA	47	NM_181680	211924	Mm.391118	NM_181680	ENSMUSG00000034774	Dsg1c	Dsg1gamma|Dsg6|dsg1g	desmoglein 1 gamma	protein-coding	0.020000	0.447761	
mm_114854.1	chr13	93301133	93301333	+	1	NA	NA	NA	-2524	NM_147176	26556	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0.010000	0.427861	
mm_27582.1	chr3	59101669	59101869	-	1	NA	NA	NA	52	NM_173398	229323	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	0.015000	0.502488	
mm_152637.1	chr19	12501817	12502017	-	1	NA	NA	NA	79	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.040000	0.537313	
mm_93121.1	chr10	91170543	91170743	-	1	NA	NA	NA	-93	NM_001283048	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.050000	0.407960	
mm_129423.1	chr15	78406313	78406513	-	1	NA	NA	NA	-299	NM_001162493	246221	Mm.294215	NM_138670	ENSMUSG00000071711	Mpst	Mst	mercaptopyruvate sulfurtransferase	protein-coding	0.065000	0.626866	
mm_17561.1	chr2	30194040	30194240	-	1	NA	NA	NA	11559	NM_172404	70266	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	0.020000	0.552239	
mm_136543.1	chr16	97922498	97922698	-	1	NA	NA	NA	35	NM_174847	207781	Mm.1465	NM_174847	ENSMUSG00000045975	C2cd2	5730563M15|5830404H04Rik|AI314146|AI449533|BF168443|ORF25|mKIAA4045	C2 calcium-dependent domain containing 2	protein-coding	0.100000	0.686567	-98(GGGCCTTTAAGG,-,0.00),-97(GGCCTTTAAGGA,-,0.00),-96(GCCTTTAAGGAG,+,0.00)
mm_156221.1	chrX	135008750	135008950	+	1	NA	NA	NA	359	NM_175446	215693	Mm.336238	NM_175446	ENSMUSG00000052676	Zmat1	A230096A06|AW990744|B930008K04Rik	zinc finger, matrin type 1	protein-coding	0.100000	0.691542	
mm_25319.1	chr3	106485976	106486176	+	1	NA	NA	NA	36	NM_028110	72121	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.015000	0.532338	
mm_62990.1	chr7	120504515	120504715	+	1	NA	NA	NA	82914	NM_001278944	233810		NM_001278943	ENSMUSG00000051900	Abca16	AY243472	ATP-binding cassette, sub-family A (ABC1), member 16	protein-coding	0.085000	0.716418	
mm_160451.1	chr8	105690655	105690855	+	1	NA	NA	NA	-151	NM_001033320	234695	Mm.471640	NM_001033320	ENSMUSG00000050357	Carmil2	CG1399-PB|D130029J02Rik|Gm585|Rltpr	capping protein regulator and myosin 1 linker 2	protein-coding	0.030000	0.502488	-22(CCTTTTAACCCC,+,0.00)
mm_52094.1	chr6	97850038	97850238	+	1	NA	NA	NA	43080	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.010000	0.432836	66(GACCATTAAAGC,-,0.00),68(CCATTAAAGCCC,+,0.00)
mm_171011.1	chr2	83556454	83556654	+	1	NA	NA	NA	-88024	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.035000	0.452736	-25(CTTTTTAGAGTT,+,0.00)
mm_44522.1	chr5	24391886	24392086	-	1	NA	NA	NA	157	NM_001002897	213948	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0.020000	0.582090	
mm_82016.1	chr9	121719744	121719944	+	1	NA	NA	NA	663	NM_010918	18087	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0.055000	0.537313	
mm_83191.1	chr9	41014005	41014205	-	1	NA	NA	NA	-9477	NM_019465	54698	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	0.010000	0.432836	
mm_12077.1	chr2	59779610	59779810	+	1	NA	NA	NA	102896	NM_001159636	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.005000	0.601990	
mm_132235.1	chr16	32750399	32750599	+	1	NA	NA	NA	14613	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.010000	0.482587	
mm_123327.1	chr14	62984407	62984607	-	1	NA	NA	NA	3	NM_001037751	432867	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0.000000	0.452736	
mm_97747.1	chr11	80472585	80472785	+	1	NA	NA	NA	-4361	NM_009871	12569	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0.005000	0.348259	-72(CTTTTTAAATAG,+,0.00)
mm_119757.1	chr14	54168456	54168656	+	1	NA	NA	NA	85373	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.537313	
mm_5246.1	chr1	16519931	16520131	-	1	NA	NA	NA	-729	NM_001111272	29819	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen (RNA binding protein) homolog 2 (Drosophila)	protein-coding	0.095000	0.671642	
mm_27933.1	chr3	79567734	79567934	-	1	NA	NA	NA	-155	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.115000	0.736318	
mm_121503.1	chr14	121930680	121930880	+	1	NA	NA	NA	-15006	NM_182806	110168	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	0.010000	0.487562	
mm_156259.1	chrX	136822659	136822859	+	1	NA	NA	NA	13	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.517413	-37(GTCTCTTTAAGG,-,0.00),-35(CTCTTTAAGGGG,+,0.00),-34(TCTTTAAGGGGG,+,0.00)
mm_83868.1	chr9	55026372	55026572	-	1	NA	NA	NA	87	NM_145129	110834	Mm.63569	NM_145129	ENSMUSG00000032303	Chrna3	(a)3|A730007P14Rik|Acra-3|Acra3	cholinergic receptor, nicotinic, alpha polypeptide 3	protein-coding	0.100000	0.691542	
mm_128401.1	chr15	44427704	44427904	-	1	NA	NA	NA	-307	NM_175009	223527	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	enhancer of yellow 2 homolog (Drosophila)	protein-coding	0.075000	0.587065	
mm_139028.1	chr17	46160947	46161147	+	1	NA	NA	NA	15	NM_001145979	56055	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.085000	0.706468	
mm_87374.1	chr10	44270151	44270351	+	1	NA	NA	NA	1912	NM_053069	11793	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0.005000	0.427861	
mm_143187.1	chr17	58934516	58934716	-	1	NA	NA	NA	56759	NM_027001	69239	Mm.246732	NM_027001	ENSMUSG00000024227	Pdzph1	2610034M16Rik|AV114557	PDZ and pleckstrin homology domains 1	protein-coding	0.015000	0.427861	-95(GCCTCTAAATGG,-,0.00)
mm_101588.1	chr11	34681649	34681849	-	1	NA	NA	NA	102156	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.010000	0.363184	
mm_63534.1	chr7	127971708	127971908	+	1	NA	NA	NA	4329	NM_139149	233908	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0.000000	0.402985	
mm_80959.1	chr9	103031370	103031570	+	1	NA	NA	NA	22981	NM_033314	24059	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	0.010000	0.402985	
mm_57718.1	chr6	128788506	128788706	-	1	NA	NA	NA	35	NM_008527	17059	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0.000000	0.462687	
mm_100221.1	chr11	117091895	117092095	+	1	NA	NA	NA	14647	NR_105853	102465258		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.050000	0.547264	-32(GCGTATAAGAGC,-,0.00)
mm_89347.1	chr10	88135829	88136029	+	1	NA	NA	NA	11012	NM_029249	75317	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	0.045000	0.487562	
mm_172736.1	chr8	78147016	78147216	-	1	NA	NA	NA	-66226	NM_183096	73301	Mm.61243	NM_183096	ENSMUSG00000037101	Ttc29	1700031F13Rik	tetratricopeptide repeat domain 29	protein-coding	0.045000	0.537313	
mm_144195.1	chr18	7901398	7901598	+	1	NA	NA	NA	32301	NM_153085	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.000000	0.343284	
mm_55886.1	chr6	83527890	83528090	-	1	NA	NA	NA	8261	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.010000	0.402985	
mm_28877.1	chr3	97762637	97762837	-	1	NA	NA	NA	5277	NR_110360	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.005000	0.393035	21(CCTTTTATAGCT,+,0.00)
mm_164576.1	chr17	24696461	24696661	-	1	NA	NA	NA	327	NM_027988	71893	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	0.065000	0.582090	
mm_61550.1	chr7	79365023	79365223	+	1	NA	NA	NA	21904	NM_020599	19771	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	0.015000	0.402985	
mm_18778.1	chr2	73580221	73580421	-	1	NA	NA	NA	17	NM_007389	11435	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	0.035000	0.636816	
mm_2621.1	chr1	120602310	120602510	+	1	NA	NA	NA	-77	NM_010133	13798	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1|engrailed-1	engrailed 1	protein-coding	0.065000	0.532338	
mm_9306.1	chr1	171639530	171639730	-	1	NA	NA	NA	2270	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.000000	0.457711	
mm_5616.1	chr1	39720902	39721102	-	1	NA	NA	NA	-13	NM_001145660	619289	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	0.100000	0.751244	
mm_40366.1	chr5	48676333	48676533	+	1	NA	NA	NA	-76751	NM_001199245	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.005000	0.383085	
mm_102064.1	chr11	52256887	52257087	-	1	NA	NA	NA	24992	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.015000	0.537313	
mm_168544.1	chr1	162721339	162721539	-	1	NA	NA	NA	19117	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.010000	0.562189	
mm_133963.1	chr16	4092162	4092362	-	1	NA	NA	NA	-14452	NM_026508	68015	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0.020000	0.497512	
mm_144822.1	chr18	36342847	36343047	+	1	NA	NA	NA	-5677	NM_001081365	66060	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.015000	0.487562	
mm_62320.1	chr7	100319319	100319519	+	1	NA	NA	NA	33899	NM_177161	320452	Mm.150294	NM_177161	ENSMUSG00000051048	P4ha3	D930031A02Rik	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III	protein-coding	0.005000	0.432836	84(CCTCATATACCC,+,0.00)
mm_65731.1	chr7	28381827	28382027	-	1	NA	NA	NA	-2699	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.040000	0.587065	
mm_168299.1	chr11	106224038	106224238	+	1	NA	NA	NA	7212	NM_028074	72047	Mm.41367	NM_028074	ENSMUSG00000020705	Ddx42	1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	protein-coding	0.010000	0.492537	
mm_35079.1	chr4	6990739	6990939	-	1	NA	NA	NA	-116	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.160000	0.766169	
mm_18894.1	chr2	76712426	76712626	-	1	NA	NA	NA	37211	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.040000	0.457711	
mm_104142.1	chr11	87025315	87025515	-	1	NA	NA	NA	-31653	NM_001005341	77864	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee-like 2 (Drosophila)	protein-coding	0.005000	0.482587	27(CCTCAAAAAGCC,+,0.00)
mm_69121.1	chr7	127026203	127026403	-	1	NA	NA	NA	176	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.060000	0.721393	
mm_20682.1	chr2	132574045	132574245	-	1	NA	NA	NA	4103	NM_001291050	74182	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	0.005000	0.293532	-65(TCTTTTAGAGCC,+,0.00)
mm_95606.1	chr11	53372388	53372588	+	1	NA	NA	NA	21721	NM_033565	93736	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.030000	0.567164	
mm_77940.1	chr9	7355730	7355930	+	1	NA	NA	NA	8456	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.015000	0.432836	
mm_127203.1	chr15	99126653	99126853	+	1	NA	NA	NA	-92	NM_139140	72572	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.155000	0.776119	
mm_110698.1	chr12	69198309	69198509	-	1	NA	NA	NA	20	NM_027269	109065	Mm.107180	NM_027269	ENSMUSG00000020973	Dnaaf2	Ktu|TU54|kintoun|mknt	dynein, axonemal assembly factor 2	protein-coding	0.035000	0.527363	
mm_45950.1	chr5	90366084	90366284	-	1	NA	NA	NA	1	NM_030886	81702	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0.145000	0.761194	
mm_64772.1	chr7	4995969	4996169	-	1	NA	NA	NA	32	NM_026741	68490	Mm.76400	NM_026741	ENSMUSG00000051550	Zfp579	1110003A17Rik|Znf579	zinc finger protein 579	protein-coding	0.070000	0.676617	
mm_62210.1	chr7	97842998	97843198	+	1	NA	NA	NA	159	NM_011035	18479	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding	0.045000	0.621891	
mm_61725.1	chr7	81858994	81859194	+	1	NA	NA	NA	93	NM_145375	107769	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.070000	0.656716	60(TCCCATTAAAGC,-,0.00)
mm_165227.1	chr2	53486258	53486458	+	1	NA	NA	NA	294274	NM_022989	65103	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	0.010000	0.313433	
mm_62958.1	chr7	119730638	119730838	+	1	NA	NA	NA	-9940	NM_145585	233802	Mm.26392	NM_145585	ENSMUSG00000030942	Thumpd1	6330575P11Rik	THUMP domain containing 1	protein-coding	0.010000	0.512438	
mm_2561.1	chr1	115826225	115826425	+	1	NA	NA	NA	141188	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.005000	0.427861	
mm_96608.1	chr11	69095163	69095363	+	1	NA	NA	NA	-3693	NM_011065	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.075000	0.611940	
mm_21841.1	chr2	165808181	165808381	-	1	NA	NA	NA	49892	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.005000	0.527363	
mm_106640.1	chr11	120991169	120991369	-	1	NA	NA	NA	64	NM_139059	104318	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0.115000	0.711443	
mm_125389.1	chr15	40969226	40969426	+	1	NA	NA	NA	314284	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding	0.000000	0.323383	
mm_168692.1	chr11	97166007	97166207	-	1	NA	NA	NA	-16395	NM_198100	73174	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0.000000	0.422886	10(GCCTTTAAACCA,+,0.00)
mm_8745.1	chr1	160251359	160251559	-	1	NA	NA	NA	-38567	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0.015000	0.447761	
mm_81761.1	chr9	114057369	114057569	+	1	NA	NA	NA	115	NM_001101510	382111	Mm.376140	NM_001101510	ENSMUSG00000086596	Susd5	Gm1126	sushi domain containing 5	protein-coding	0.135000	0.761194	
mm_26571.1	chr3	146602405	146602605	+	1	NA	NA	NA	5356	NM_009474	22262	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.005000	0.398010	
mm_9076.1	chr1	168431408	168431608	-	1	NA	NA	NA	661	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.070000	0.631841	
mm_42435.1	chr5	115429429	115429629	+	1	NA	NA	NA	-156	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.145000	0.825871	
mm_72963.1	chr8	92830686	92830886	+	1	NA	NA	NA	3489	NM_008610	17390	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	0.015000	0.567164	
mm_151402.1	chr19	56510490	56510690	+	1	NA	NA	NA	37632	NM_018831	55947	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0.010000	0.497512	
mm_104885.1	chr11	99550764	99550964	-	1	NA	NA	NA	-1	NM_025524	66380	Mm.30539	NM_025524	ENSMUSG00000069722	Krtap3-3	2310020D06Rik|KAP3.3|KRTAP3.3	keratin associated protein 3-3	protein-coding	0.020000	0.512438	-35(GGGTATATAAGA,-,0.00)
mm_27322.1	chr3	50367357	50367557	-	1	NA	NA	NA	76156	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.432836	
mm_6724.1	chr1	82586712	82586912	-	1	NA	NA	NA	37	NM_007735	12829	Mm.40253	NM_007735	ENSMUSG00000067158	Col4a4	E130010M05Rik|[a]4(IV)	collagen, type IV, alpha 4	protein-coding	0.060000	0.676617	
mm_2060.1	chr1	87551165	87551365	+	1	NA	NA	NA	22605	NM_001111314	53972	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	0.015000	0.547264	-33(CCATTTATACGC,+,0.00)
mm_127411.1	chr15	101256289	101256489	+	1	NA	NA	NA	-10457	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.030000	0.587065	-54(CCCTTTAGAGAC,+,0.00)
mm_44834.1	chr5	34105712	34105912	-	1	NA	NA	NA	-12928	NR_040703	75357	Mm.410806	NR_040703	ENSMUSG00000106902	4930557J02Rik	-	RIKEN cDNA 4930557J02 gene	ncRNA	0.005000	0.482587	
mm_126586.1	chr15	82298887	82299087	+	1	NA	NA	NA	3	NM_029066	74716	Mm.159315	NM_029066	ENSMUSG00000022455	Wbp2nl	4930521I23Rik|PAWP	WBP2 N-terminal like	protein-coding	0.065000	0.641791	
mm_111561.1	chr12	101115182	101115382	-	1	NA	NA	NA	-30327	NR_033653	74947	Mm.488905	NR_033653	ENSMUSG00000092054	Kif4-ps	4930463M05Rik|Kif4b	kinesin family member 4, pseudogene	pseudo	0.000000	0.432836	
mm_168497.1	chr11	51606323	51606523	-	1	NA	NA	NA	458	NM_001048061	15384	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.165000	0.776119	
mm_119296.1	chr14	34676983	34677183	+	1	NA	NA	NA	3155	NM_001301330	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.010000	0.373134	
mm_31567.1	chr4	57578205	57578405	+	1	NA	NA	NA	10057	NM_172868	242481	Mm.331630	NM_172868	ENSMUSG00000090053	Palm2	53-H12|B130066I24|R75368|pEN70	paralemmin 2	protein-coding	0.010000	0.467662	
mm_79577.1	chr9	58134798	58134998	+	1	NA	NA	NA	233	NM_001162479	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.015000	0.507463	
mm_65861.1	chr7	29354191	29354391	-	1	NA	NA	NA	50286	NM_013874	29861	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.035000	0.597015	
mm_13297.1	chr2	102039553	102039753	+	1	NA	NA	NA	146807	NM_178886	241576	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.010000	0.472637	
mm_130036.1	chr15	88978691	88978891	-	1	NA	NA	NA	-238	NM_133241	170790	Mm.32780	NM_133241	ENSMUSG00000035805	Mlc1	AW048630|BB074274|Kiaa0027-hp|LVM|MLC|VL|WKL1|mKIAA0027	megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	protein-coding	0.010000	0.482587	-99(GCTTAAAAAGAT,+,0.00)
mm_1122.1	chr1	59977863	59978063	+	1	NA	NA	NA	64957	NM_001037725	72750	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0.010000	0.353234	
mm_160905.1	chr11	77722692	77722892	-	1	NA	NA	NA	2501	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.005000	0.437811	
mm_62657.1	chr7	107693787	107693987	+	1	NA	NA	NA	64145	NM_001205227	320635	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	0.010000	0.393035	
mm_136947.1	chr17	14512755	14512955	+	1	NA	NA	NA	-113913	NR_027986	74917	Mm.32228	NM_183107		4930474M22Rik	-	RIKEN cDNA 4930474M22 gene	ncRNA	0.005000	0.467662	
mm_9182.1	chr1	171059298	171059498	-	1	NA	NA	NA	5	NM_010188	14131	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	0.005000	0.427861	
mm_63188.1	chr7	125581339	125581539	+	1	NA	NA	NA	-21990	NM_021887	60504	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.080000	0.601990	
mm_60090.1	chr7	34743848	34744048	+	1	NA	NA	NA	68763	NM_175140	68947	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	0.010000	0.522388	
mm_14364.1	chr2	129616462	129616662	+	1	NA	NA	NA	23393	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.030000	0.422886	
mm_20465.1	chr2	129367967	129368167	-	1	NA	NA	NA	-1835	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.010000	0.527363	
mm_151949.1	chr19	5801051	5801251	-	1	NA	NA	NA	1521	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.050000	0.577114	
mm_1870.1	chr1	85600556	85600756	+	1	NA	NA	NA	-47	NM_001013817	434484	Mm.445821	NM_001013817	ENSMUSG00000070031	Sp140	-	Sp140 nuclear body protein	protein-coding	0.020000	0.527363	
mm_84376.1	chr9	65036959	65037159	-	1	NA	NA	NA	4601	NM_028906	74388	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	0.025000	0.467662	-35(CGACATAAAAAG,-,0.00)
mm_41736.1	chr5	102718387	102718587	+	1	NA	NA	NA	-50323	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.020000	0.432836	
mm_89694.1	chr10	97568267	97568467	+	1	NA	NA	NA	2866	NM_008524	17022	Mm.18888	NM_008524	ENSMUSG00000036446	Lum	Ldc|SLRR2D	lumican	protein-coding	0.010000	0.482587	
mm_79210.1	chr9	49030780	49030980	+	1	NA	NA	NA	-24701	NM_012039	26951	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	0.010000	0.537313	
mm_6338.1	chr1	71629300	71629500	-	1	NA	NA	NA	23834	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.035000	0.547264	
mm_113284.1	chr13	30136544	30136744	+	1	NA	NA	NA	154	NM_153546	218121	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	0.085000	0.716418	
mm_110321.1	chr12	34714457	34714657	-	1	NA	NA	NA	-185668	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.020000	0.422886	
mm_57016.1	chr6	121245680	121245880	-	1	NA	NA	NA	-126	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.085000	0.601990	
mm_58697.1	chr7	12925636	12925836	+	1	NA	NA	NA	-1680	NM_029809	381845	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0.035000	0.557214	-52(GGGTTGAAAAGG,-,0.00)
mm_21932.1	chr2	167056542	167056742	-	1	NA	NA	NA	-6292	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.010000	0.592040	
mm_13517.1	chr2	109917630	109917830	+	1	NA	NA	NA	83	NM_172671	107515	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	0.105000	0.716418	
mm_50517.1	chr6	49040578	49040778	+	1	NA	NA	NA	4160	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.005000	0.358209	
mm_132040.1	chr16	27434962	27435162	+	1	NA	NA	NA	46106	NM_001289436	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.000000	0.407960	
mm_166655.1	chr6	87346100	87346300	-	1	NA	NA	NA	4715	NM_025466	66283	Mm.46414	NM_025466	ENSMUSG00000030050	Gkn1	2200002K21Rik|AMP-18|BRICD1|Fov	gastrokine 1	protein-coding	0.015000	0.482587	4(GCTTCTTTAAGG,-,0.00)
mm_162554.1	chr1	171439219	171439419	+	1	NA	NA	NA	1758	NM_172647	16456	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	0.020000	0.447761	
mm_119873.1	chr14	54686286	54686486	+	1	NA	NA	NA	215	NM_021437	58248	Mm.197509	NM_021437	ENSMUSG00000040822	1700123O20Rik	MNCb-2990	RIKEN cDNA 1700123O20 gene	protein-coding	0.125000	0.686567	
mm_8546.1	chr1	155128418	155128618	-	1	NA	NA	NA	18262	NM_008209	15064	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	0.000000	0.363184	
mm_99842.1	chr11	109353610	109353810	+	1	NA	NA	NA	6843	NR_027883	67927	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	0.020000	0.522388	-65(TGCTCTTAAAGC,-,0.00),-64(GCTCTTAAAGCC,+,0.00)
mm_91550.1	chr10	39893995	39894195	-	1	NA	NA	NA	5143	NR_033628	213332	Mm.484359	NR_033628		Mfsd4b4	AA474331	major facilitator superfamily domain containing 4B4	pseudo	0.005000	0.452736	
mm_82271.1	chr9	7348706	7348906	-	1	NA	NA	NA	1432	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.015000	0.482587	
mm_156834.1	chrX	164373269	164373469	+	1	NA	NA	NA	-153	NM_001308489	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.005000	0.447761	75(CTCCTTATAAAG,-,0.00),77(CCTTATAAAGCA,+,0.00)
mm_114202.1	chr13	56005933	56006133	+	1	NA	NA	NA	129517	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.005000	0.477612	
mm_115574.1	chr13	11572799	11572999	-	1	NA	NA	NA	50847	NR_027813	664793	Mm.410565	NR_027813		Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo	0.005000	0.422886	
mm_8355.1	chr1	150392639	150392839	-	1	NA	NA	NA	-99	NM_133780	108989	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0.065000	0.587065	
mm_171523.1	chr4	146610856	146611056	+	1	NA	NA	NA	-64083	NR_045468	67524	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	0.040000	0.502488	
mm_36062.1	chr4	57915657	57915857	-	1	NA	NA	NA	507	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.025000	0.582090	
mm_42333.1	chr5	114902744	114902944	+	1	NA	NA	NA	5910	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.000000	0.427861	
mm_153315.1	chr19	38043541	38043741	-	1	NA	NA	NA	-64	NM_001302140	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.060000	0.512438	
mm_138227.1	chr17	34354754	34354954	+	1	NA	NA	NA	32	NM_079835	547431	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	0.015000	0.487562	
mm_77515.1	chr8	122894412	122894612	-	1	NA	NA	NA	46138	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.010000	0.457711	
mm_63622.1	chr7	128266231	128266431	+	1	NA	NA	NA	634	NM_133254	246787	Mm.38870	NM_133254	ENSMUSG00000030781	Slc5a2	Sglt2	solute carrier family 5 (sodium/glucose cotransporter), member 2	protein-coding	0.010000	0.542289	
mm_27969.1	chr3	80717389	80717589	-	1	NA	NA	NA	85302	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.005000	0.258706	
mm_5726.1	chr1	44118617	44118817	-	1	NA	NA	NA	56	NM_023645	72050	Mm.281714	NM_023645	ENSMUSG00000026047	Kdelc1	1810049A15Rik|5730416C13Rik|EP58|Kdel1	KDEL (Lys-Asp-Glu-Leu) containing 1	protein-coding	0.070000	0.557214	
mm_62146.1	chr7	97111583	97111783	+	1	NA	NA	NA	29932	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.005000	0.378109	
mm_17014.1	chr2	18923777	18923977	-	1	NA	NA	NA	74244	NM_008845	18718	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.020000	0.537313	-34(TAGTATAAAAAG,-,0.00)
mm_147265.1	chr18	38881341	38881541	-	1	NA	NA	NA	-11015	NM_001033789	545253	Mm.244585	NM_001033789	ENSMUSG00000036452	Gm5820	EG545253	predicted gene 5820	protein-coding	0.000000	0.557214	-26(GCTTAAAGAGAG,+,0.00)
mm_13029.1	chr2	91054026	91054226	+	1	NA	NA	NA	110	NM_008948	19182	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	0.115000	0.661692	
mm_90925.1	chr10	12813507	12813707	-	1	NA	NA	NA	48128	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.025000	0.472637	-49(GACTTTAAAAAA,-,0.00)
mm_1161.1	chr1	60908994	60909194	+	1	NA	NA	NA	69	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.015000	0.517413	-34(GTCTATATAAAG,-,0.00),-32(CTATATAAAGTC,+,0.00)
mm_123905.1	chr14	73253424	73253624	-	1	NA	NA	NA	15633	NM_175116	67168	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.010000	0.358209	75(CTTTTAAAACTG,+,0.00)
mm_76407.1	chr8	84855574	84855774	-	1	NA	NA	NA	-1312	NM_025648	66590	Mm.292517	NM_025648	ENSMUSG00000003808	Farsa	0610012A19Rik|Farsla	phenylalanyl-tRNA synthetase, alpha subunit	protein-coding	0.020000	0.417910	
mm_101358.1	chr11	23740737	23740937	-	1	NA	NA	NA	30133	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.015000	0.398010	
mm_154502.1	chrM	11789	11989	-	1	NA	NA	NA	NA	NA									0.000000	0.313433	
mm_95556.1	chr11	52310913	52311113	+	1	NA	NA	NA	-27999	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.030000	0.532338	
mm_62510.1	chr7	102210073	102210273	+	1	NA	NA	NA	-7	NM_001287164	269966	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	0.150000	0.706468	
mm_123530.1	chr14	66804411	66804611	-	1	NA	NA	NA	64089	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.005000	0.398010	12(TGCTCTTAAAGC,-,0.00),13(GCTCTTAAAGCC,+,0.00)
mm_95304.1	chr11	46127167	46127367	+	1	NA	NA	NA	-637	NM_001311209	11492	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.030000	0.562189	
mm_4778.1	chr1	182959019	182959219	+	1	NA	NA	NA	4331	NM_016928	53791	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.010000	0.522388	
mm_144714.1	chr18	35048194	35048394	+	1	NA	NA	NA	-70618	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.015000	0.437811	
mm_92804.1	chr10	81365739	81365939	-	1	NA	NA	NA	-19	NM_001014836	432479	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.025000	0.611940	
mm_52393.1	chr6	113301516	113301716	+	1	NA	NA	NA	-5521	NM_030178	78783	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.015000	0.552239	
mm_95964.1	chr11	58884007	58884207	+	1	NA	NA	NA	16867	NM_172403	69944	Mm.32118	NM_172403	ENSMUSG00000020491	2810021J22Rik	AI449137	RIKEN cDNA 2810021J22 gene	protein-coding	0.010000	0.502488	
mm_6166.1	chr1	65062089	65062289	-	1	NA	NA	NA	1251	NM_007776	12967	Mm.425031	NM_007776	ENSMUSG00000067299	Crygd	Aey4|Cryg-1|DGcry-1|Lop12	crystallin, gamma D	protein-coding	0.035000	0.492537	
mm_94066.1	chr10	128400361	128400561	-	1	NA	NA	NA	5	NM_028051	72002	Mm.22983	NM_028051	ENSMUSG00000039878	Slc39a5	1810013D05Rik|2010205A06Rik|Zip5	solute carrier family 39 (metal ion transporter), member 5	protein-coding	0.015000	0.572139	
mm_40232.1	chr5	37288823	37289023	+	1	NA	NA	NA	43159	NM_007765	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.020000	0.567164	
mm_18693.1	chr2	71543776	71543976	-	1	NA	NA	NA	2878	NM_010054	13392	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0.020000	0.388060	
mm_139237.1	chr17	47732872	47733072	+	1	NA	NA	NA	-4065	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.015000	0.572139	
mm_35454.1	chr4	40702696	40702896	-	1	NA	NA	NA	120	NM_025545	66408	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0.025000	0.502488	
mm_92517.1	chr10	78464878	78465078	-	1	NA	NA	NA	-30	NM_172134	216134	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.120000	0.716418	
mm_154657.1	chrX	7841917	7842117	+	1	NA	NA	NA	-65	NM_001290537	54644	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	0.105000	0.646766	
mm_66282.1	chr7	37770677	37770877	-	1	NA	NA	NA	-1025	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.090000	0.646766	
mm_139312.1	chr17	48351740	48351940	+	1	NA	NA	NA	5439	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.010000	0.597015	
mm_90803.1	chr10	7663609	7663809	-	1	NA	NA	NA	-101	NM_001347228	18537	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	0.040000	0.547264	
mm_66575.1	chr7	45334445	45334645	-	1	NA	NA	NA	-724	NM_010473	15464	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.010000	0.457711	
mm_112207.1	chr12	113427190	113427390	-	1	NA	NA	NA	-62275	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.258706	
mm_133648.1	chr16	91793989	91794189	+	1	NA	NA	NA	64718	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.000000	0.353234	
mm_115162.1	chr13	107687295	107687495	+	1	NA	NA	NA	-2	NR_045900	72257	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.045000	0.552239	
mm_86516.1	chr10	7681111	7681311	+	1	NA	NA	NA	2	NM_010690	16798	Mm.34083	NM_010690	ENSMUSG00000040021	Lats1	AW208599	large tumor suppressor	protein-coding	0.150000	0.761194	
mm_18256.1	chr2	52271036	52271236	-	1	NA	NA	NA	-19866	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.020000	0.472637	
mm_115749.1	chr13	18378357	18378557	-	1	NA	NA	NA	3582	NM_175006	218030	Mm.352263	NM_175006	ENSMUSG00000009734	Pou6f2	D130006K24Rik|RPF-1	POU domain, class 6, transcription factor 2	protein-coding	0.015000	0.502488	
mm_84044.1	chr9	57946482	57946682	-	1	NA	NA	NA	6447	NM_011352	20361	Mm.335187	NM_011352	ENSMUSG00000038264	Sema7a	2900057C09Rik|CDw108|H-Sema-L|M-Sema-L|Semal	sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A	protein-coding	0.015000	0.522388	
mm_144447.1	chr18	22721510	22721710	+	1	NA	NA	NA	317053	NM_001161483	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding	0.015000	0.368159	
mm_167736.1	chr9	106197372	106197572	-	1	NA	NA	NA	1467	NM_198931	67905	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	0.005000	0.477612	
mm_54322.1	chr6	30390913	30391113	-	1	NA	NA	NA	-3	NM_172735	232679	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	0.060000	0.552239	
mm_101434.1	chr11	30100263	30100463	-	1	NA	NA	NA	-74330	NM_146016	237711	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0.005000	0.338308	
mm_130395.1	chr15	97975578	97975778	-	1	NA	NA	NA	11449	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.020000	0.432836	
mm_60905.1	chr7	46712584	46712784	+	1	NA	NA	NA	-2033	NM_030233	78935	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.030000	0.537313	
mm_15947.1	chr2	165917290	165917490	+	1	NA	NA	NA	-32552	NM_001252587	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.010000	0.492537	
mm_77072.1	chr8	110039284	110039484	-	1	NA	NA	NA	-50	NM_011998	26887	Mm.89207	NM_011998	ENSMUSG00000035930	Chst4	GST-3|Gn6st-2|HEC-GlcNAc6ST	carbohydrate (chondroitin 6/keratan) sulfotransferase 4	protein-coding	0.015000	0.537313	
mm_51617.1	chr6	85187417	85187617	+	1	NA	NA	NA	-414	NM_010131	13796	Mm.391473	NM_010131	ENSMUSG00000033726	Emx1	-	empty spiracles homeobox 1	protein-coding	0.070000	0.681592	
mm_33219.1	chr4	126677544	126677744	+	1	NA	NA	NA	1	NM_011970	26445	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	0.095000	0.666667	
mm_168318.1	chr11	11436793	11436993	+	1	NA	NA	NA	25526	NM_015785	53604	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	0.045000	0.457711	
mm_85981.1	chr9	112166594	112166794	-	1	NA	NA	NA	19255	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.015000	0.313433	
mm_104738.1	chr11	98384705	98384905	-	1	NA	NA	NA	994	NM_011540	21393	Mm.10762	NM_011540	ENSMUSG00000007877	Tcap	AI503981|AJ223855	titin-cap	protein-coding	0.020000	0.601990	
mm_28378.1	chr3	89963180	89963380	-	1	NA	NA	NA	52	NM_001081182	54667	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	0.125000	0.815920	
mm_122567.1	chr14	50795597	50795797	-	1	NA	NA	NA	31	NM_001111119	239083	Mm.343880	NM_001111119	ENSMUSG00000071470	Ccnb1ip1	Gm288|Hei10|mei4	cyclin B1 interacting protein 1	protein-coding	0.045000	0.547264	
mm_78244.1	chr9	21637191	21637391	+	1	NA	NA	NA	21122	NM_001174078	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.015000	0.616915	
mm_84591.1	chr9	70036634	70036834	-	1	NA	NA	NA	1354	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.015000	0.492537	
mm_41951.1	chr5	105741767	105741967	+	1	NA	NA	NA	41057	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.020000	0.427861	
mm_18528.1	chr2	63184217	63184417	-	1	NA	NA	NA	-30	NM_133207	170738	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.105000	0.741294	
mm_151724.1	chr19	4839212	4839412	-	1	NA	NA	NA	10	NM_016892	12460	Mm.434411	NM_016892	ENSMUSG00000034108	Ccs	Ccsd	copper chaperone for superoxide dismutase	protein-coding	0.075000	0.641791	
mm_137433.1	chr17	26414758	26414958	+	1	NA	NA	NA	-107	NM_001081656	240055	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	0.180000	0.860697	
mm_27439.1	chr3	51788551	51788751	-	1	NA	NA	NA	127472	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.015000	0.432836	
mm_9382.1	chr1	172212970	172213170	-	1	NA	NA	NA	-6266	NM_011063	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.010000	0.527363	
mm_66640.1	chr7	45575086	45575286	-	1	NA	NA	NA	-10	NR_038165	71661	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0.035000	0.577114	
mm_165147.1	chr2	19300444	19300644	+	1	NA	NA	NA	-43773	NR_126563	108871	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.010000	0.472637	
mm_152365.1	chr19	10101456	10101656	-	1	NA	NA	NA	-53	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	0.095000	0.676617	
mm_114766.1	chr13	88521097	88521297	+	1	NA	NA	NA	-300275	NM_010103	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.025000	0.527363	
mm_26192.1	chr3	138488775	138488975	+	1	NA	NA	NA	507	NM_175224	75624	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	0.055000	0.502488	
mm_111665.1	chr12	103336300	103336500	-	1	NA	NA	NA	19601	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.015000	0.542289	
mm_140888.1	chr17	23955243	23955443	-	1	NA	NA	NA	-70	NM_001077421	638345	Mm.46428	NM_001077421	ENSMUSG00000024125	Sbpl	2310068J22Rik	spermine binding protein-like	protein-coding	0.015000	0.517413	37(GGGTATAAAGGG,-,0.00)
mm_166527.1	chr6	25931300	25931500	+	1	NA	NA	NA	-26	NR_040771	626904	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.020000	0.517413	
mm_60839.1	chr7	45725768	45725968	+	1	NA	NA	NA	-52	NM_027055	69363	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	0.020000	0.592040	
mm_45395.1	chr5	66151269	66151469	-	1	NA	NA	NA	-391	NM_178446	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.040000	0.631841	
mm_3753.1	chr1	156036123	156036323	+	1	NA	NA	NA	187	NM_001160182	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.095000	0.631841	
mm_8296.1	chr1	143679602	143679802	-	1	NA	NA	NA	23191	NM_145991	214498	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	0.005000	0.447761	
mm_170936.1	chr2	47200280	47200480	-	1	NA	NA	NA	1503775	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.030000	0.477612	
mm_170870.1	chr2	20547878	20548078	+	1	NA	NA	NA	28465	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.020000	0.422886	
mm_5919.1	chr1	55088010	55088210	-	1	NA	NA	NA	-38	NM_008303	15528	Mm.215667	NM_008303	ENSMUSG00000073676	Hspe1	10kDa|Hsp10|mt-cpn10	heat shock protein 1 (chaperonin 10)	protein-coding	0.105000	0.671642	
mm_137729.1	chr17	29274094	29274294	+	1	NA	NA	NA	5406	NM_030561	80748	Mm.290116	NM_030561	ENSMUSG00000052712	BC004004	2400006G15Rik	cDNA sequence BC004004	protein-coding	0.025000	0.547264	
mm_150163.1	chr19	32388424	32388624	+	1	NA	NA	NA	-70	NM_144792	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.130000	0.741294	
mm_54716.1	chr6	39844279	39844479	-	1	NA	NA	NA	-33443	NM_001010930	14548	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.055000	0.597015	
mm_126540.1	chr15	82022829	82023029	+	1	NA	NA	NA	6560	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.040000	0.552239	
mm_115719.1	chr13	15914285	15914485	-	1	NA	NA	NA	-97466	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.507463	
mm_103639.1	chr11	78963142	78963342	-	1	NA	NA	NA	21682	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.000000	0.512438	
mm_126778.1	chr15	86182810	86183010	+	1	NA	NA	NA	3231	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.060000	0.597015	
mm_34223.1	chr4	140992322	140992522	+	1	NA	NA	NA	5549	NM_001164366	74772	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.065000	0.611940	
mm_163168.1	chr11	86758077	86758277	+	1	NA	NA	NA	-685	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.065000	0.636816	
mm_23212.1	chr3	41564903	41565103	+	1	NA	NA	NA	123	NM_001130186	269424	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.115000	0.731343	-33(GCGTTTAAATAG,-,0.00),-31(GTTTAAATAGCA,+,0.00)
mm_20471.1	chr2	129410293	129410493	-	1	NA	NA	NA	-39254	NM_008361	16176	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	0.015000	0.457711	
mm_137301.1	chr17	24850569	24850769	+	1	NA	NA	NA	2	NM_001159626	14651	Mm.43784	NM_024284	ENSMUSG00000024158	Hagh	BC019817|Glo-2|Glo2|Rsp29	hydroxyacyl glutathione hydrolase	protein-coding	0.115000	0.711443	
mm_87808.1	chr10	60301665	60301865	+	1	NA	NA	NA	17304	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.010000	0.467662	
mm_112842.1	chr13	20831011	20831211	+	1	NA	NA	NA	36998	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.422886	
mm_47494.1	chr5	124010615	124010815	-	1	NA	NA	NA	13863	NR_105999	102465625		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.015000	0.467662	
mm_90728.1	chr10	5194765	5194965	-	1	NA	NA	NA	-158	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.045000	0.626866	
mm_39171.1	chr4	155696936	155697136	-	1	NA	NA	NA	2694	NM_178699	230991	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	0.025000	0.547264	
mm_31355.1	chr4	47207488	47207688	+	1	NA	NA	NA	-424	NM_009928	12819	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.020000	0.517413	-78(GTCCCTTAAAAG,-,0.00),-77(TCCCTTAAAAGC,-,0.00),-76(CCCTTAAAAGCC,+,0.00),-75(CCTTAAAAGCCA,+,0.00)
mm_164057.1	chr14	106217754	106217954	+	1	NA	NA	NA	111656	NR_073203	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0.015000	0.547264	
mm_18772.1	chr2	73486359	73486559	-	1	NA	NA	NA	-706	NM_001289723	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.025000	0.512438	
mm_849.1	chr1	52008571	52008771	+	1	NA	NA	NA	431	NM_011487	20849	Mm.1550	NM_011487	ENSMUSG00000062939	Stat4	-	signal transducer and activator of transcription 4	protein-coding	0.035000	0.572139	
mm_41595.1	chr5	95958627	95958827	+	1	NA	NA	NA	1788	NM_018866	55985	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.015000	0.388060	
mm_23830.1	chr3	81208897	81209097	+	1	NA	NA	NA	172581	NM_019971	54635	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C	platelet-derived growth factor, C polypeptide	protein-coding	0.020000	0.417910	-36(GCTTTTATAAAA,+,0.00),-34(TTTTATAAAAGG,-,0.00)
mm_96021.1	chr11	59543260	59543460	+	1	NA	NA	NA	674	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.020000	0.467662	
mm_133845.1	chr16	96200586	96200786	+	1	NA	NA	NA	216	NM_015825	50795	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0.040000	0.577114	
mm_105171.1	chr11	101784371	101784571	-	1	NA	NA	NA	839	NM_008815	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.090000	0.746269	
mm_80554.1	chr9	83100566	83100766	+	1	NA	NA	NA	45941	NM_175074	94353	Mm.244426	NM_026122	ENSMUSG00000066456	Hmgn3	1110002A15Rik|6330514M13Rik|BB071015|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding	0.000000	0.442786	
mm_72743.1	chr8	85087091	85087291	+	1	NA	NA	NA	3922	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.025000	0.532338	
mm_104279.1	chr11	89733594	89733794	-	1	NA	NA	NA	-36758	NM_001327810	382543	Mm.60997	NM_172534	ENSMUSG00000047773	Ankfn1	4932411E22Rik|Gm1175|nmf9	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding	0.015000	0.562189	
mm_25652.1	chr3	121457242	121457442	+	1	NA	NA	NA	30801	NM_028044	71994	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0.055000	0.537313	
mm_25423.1	chr3	107873801	107874001	+	1	NA	NA	NA	-3329	NM_133867	99662	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0.015000	0.527363	
mm_154648.1	chrX	7794302	7794502	+	1	NA	NA	NA	4409	NM_207670	54645	Mm.194811	NM_207670	ENSMUSG00000031153	Gripap1	AI854681|DXImx47e|GRASP-1|Sfc10|mKIAA1167	GRIP1 associated protein 1	protein-coding	0.010000	0.442786	
mm_41587.1	chr5	93267452	93267652	+	1	NA	NA	NA	-21	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0.100000	0.686567	
mm_77328.1	chr8	119428833	119429033	-	1	NA	NA	NA	-8229	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.005000	0.532338	
mm_16340.1	chr2	174341740	174341940	+	1	NA	NA	NA	11751	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.035000	0.592040	
mm_156329.1	chrX	138936226	138936426	+	1	NA	NA	NA	21896	NM_013724	27206	Mm.482319	NM_013724	ENSMUSG00000052854	Nrk	AA407323|AA409510|AI225895|AV168563|AW538185|Nesk	Nik related kinase	protein-coding	0.010000	0.378109	
mm_61413.1	chr7	73558756	73558956	+	1	NA	NA	NA	-461	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.055000	0.492537	35(AGCCATTAAAAG,-,0.00),37(CCATTAAAAGCT,+,0.00)
mm_26732.1	chr3	5576002	5576202	-	1	NA	NA	NA	146	NM_001163301	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.125000	0.676617	
mm_135624.1	chr16	52274072	52274272	-	1	NA	NA	NA	178909	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.437811	
mm_89055.1	chr10	82881665	82881865	+	1	NA	NA	NA	15139	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.025000	0.472637	
mm_128227.1	chr15	36555468	36555668	-	1	NA	NA	NA	0	NM_001347022	66696	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	0.075000	0.711443	
mm_121927.1	chr14	23729291	23729491	-	1	NA	NA	NA	274814	NM_001253375	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.000000	0.417910	
mm_64551.1	chr7	144422884	144423084	+	1	NA	NA	NA	20449	NR_037302	100499519		NR_037302	ENSMUSG00000093912	Mir3470b	mmu-mir-3470b	microRNA 3470b	ncRNA	0.010000	0.432836	
mm_32426.1	chr4	107127847	107128047	+	1	NA	NA	NA	31056	NM_172873	242603	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	0.000000	0.363184	
mm_33103.1	chr4	124703621	124703821	+	1	NA	NA	NA	3022	NM_010213	14201	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	0.010000	0.597015	
mm_781.1	chr1	44789299	44789499	+	1	NA	NA	NA	-44450	NR_040602	75066	Mm.416932	NR_040602	ENSMUSG00000101701	4930521E06Rik	-	RIKEN cDNA 4930521E06 gene	ncRNA	0.000000	0.273632	
mm_102731.1	chr11	67244615	67244815	-	1	NA	NA	NA	6903	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.025000	0.497512	
mm_65828.1	chr7	29179231	29179431	-	1	NA	NA	NA	1342	NM_026545	57296	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	0.020000	0.407960	
mm_85714.1	chr9	108208696	108208896	-	1	NA	NA	NA	-18413	NM_007567	12217	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	0.040000	0.572139	
mm_10418.1	chr2	13580086	13580286	+	1	NA	NA	NA	5875	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.035000	0.502488	
mm_111226.1	chr12	84756463	84756663	-	1	NA	NA	NA	16549	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.030000	0.487562	
mm_138267.1	chr17	34604090	34604290	+	1	NA	NA	NA	-629	NM_019403	54197	Mm.274542	NM_019403	ENSMUSG00000015478	Rnf5	2410131O05Rik|AA407576|NG2	ring finger protein 5	protein-coding	0.080000	0.631841	
mm_49117.1	chr6	8509708	8509908	+	1	NA	NA	NA	208	NM_133236	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.175000	0.796020	
mm_4223.1	chr1	171331268	171331468	+	1	NA	NA	NA	2223	NM_011615	21945	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	0.015000	0.467662	
mm_87448.1	chr10	51481692	51481892	+	1	NA	NA	NA	1180	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.005000	0.487562	
mm_21302.1	chr2	157058641	157058841	-	1	NA	NA	NA	20524	NM_001164663	320706	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.035000	0.572139	
mm_127919.1	chr15	9572459	9572659	-	1	NA	NA	NA	-42683	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.000000	0.407960	
mm_160182.1	chr7	46713404	46713604	-	1	NA	NA	NA	2172	NM_011315	20210	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	0.020000	0.552239	
mm_106838.1	chr12	8006556	8006756	+	1	NA	NA	NA	28979	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.487562	
mm_53025.1	chr6	124474763	124474963	+	1	NA	NA	NA	-10079	NM_153508	232370	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.025000	0.472637	
mm_171528.1	chr4	146610968	146611168	+	1	NA	NA	NA	-64195	NR_045468	67524	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	0.030000	0.527363	
mm_34043.1	chr4	138216384	138216584	+	1	NA	NA	NA	-128	NM_001122896	15441	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	0.135000	0.761194	
mm_151763.1	chr19	5158501	5158701	-	1	NA	NA	NA	-40193	NM_008451	16594	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	0.025000	0.422886	8(GCTTTTATATAA,+,0.00)
mm_88484.1	chr10	77630055	77630255	+	1	NA	NA	NA	7834	NM_019803	22213	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0.000000	0.527363	
mm_44209.1	chr5	4104388	4104588	-	1	NA	NA	NA	209	NM_020010	13121	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	0.090000	0.691542	
mm_91990.1	chr10	61979053	61979253	-	1	NA	NA	NA	-45	NM_007731	12817	Mm.300931	NM_007731	ENSMUSG00000058806	Col13a1	-	collagen, type XIII, alpha 1	protein-coding	0.105000	0.676617	
mm_66828.1	chr7	48843552	48843752	-	1	NA	NA	NA	19	NM_013808	13009	Mm.17235	NM_013808	ENSMUSG00000030470	Csrp3	CRP3|MLP|MMLP	cysteine and glycine-rich protein 3	protein-coding	0.020000	0.487562	
mm_71789.1	chr8	66704471	66704671	+	1	NA	NA	NA	7149	NM_010934	18166	Mm.5112	NM_010934	ENSMUSG00000036437	Npy1r	Npyr|Y1-R	neuropeptide Y receptor Y1	protein-coding	0.025000	0.482587	
mm_48490.1	chr5	142564397	142564597	-	1	NA	NA	NA	-13399	NM_001289588	231858	Mm.33766	NM_178702	ENSMUSG00000029576	Radil	AI536456|D930005D10Rik	Ras association and DIL domains	protein-coding	0.000000	0.358209	
mm_31114.1	chr4	42949792	42949992	+	1	NA	NA	NA	-3202	NM_019874	56323	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.120000	0.726368	
mm_135168.1	chr16	35928793	35928993	-	1	NA	NA	NA	-9577	NM_030253	80285	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.010000	0.507463	
mm_115470.1	chr13	119462746	119462946	+	1	NA	NA	NA	87	NM_026127	67392	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	0.075000	0.522388	
mm_37982.1	chr4	133620599	133620799	-	1	NA	NA	NA	12730	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.010000	0.522388	
mm_128403.1	chr15	44428220	44428420	-	1	NA	NA	NA	-13	NM_026149	67429	Mm.490404	NM_026149	ENSMUSG00000038736	Nudcd1	4921532K09Rik|AA407246|AW260430|AW556235|CML66-L|Cml66	NudC domain containing 1	protein-coding	0.105000	0.701493	
mm_113785.1	chr13	45507524	45507724	+	1	NA	NA	NA	180	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.130000	0.686567	
mm_71694.1	chr8	61479318	61479518	+	1	NA	NA	NA	-8316	NM_145595	234309	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.030000	0.452736	
mm_71107.1	chr8	35602057	35602257	+	1	NA	NA	NA	-13137	NR_040376	100504714	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0.010000	0.353234	
mm_96009.1	chr11	59542572	59542772	+	1	NA	NA	NA	-14	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.020000	0.467662	-75(TTCCATTAAAAG,-,0.00),-73(CCATTAAAAGAA,+,0.00)
mm_126981.1	chr15	93453481	93453681	+	1	NA	NA	NA	55117	NM_001285863	223828	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.000000	0.393035	
mm_107527.1	chr12	40472769	40472969	+	1	NA	NA	NA	26816	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.020000	0.477612	27(GGCCATAAAGGT,-,0.00)
mm_170677.1	chr2	121956310	121956510	+	1	NA	NA	NA	-318	NM_008545	17147	Mm.389349	NM_008545	ENSMUSG00000074881	Mageb3	Mage-b3|Mage-ps1|Mage-rs3|Smage3	melanoma antigen, family B, 3	protein-coding	0.090000	0.691542	
mm_54606.1	chr6	38341103	38341303	-	1	NA	NA	NA	13400	NM_028864	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.005000	0.393035	
mm_107975.1	chr12	72939819	72940019	+	1	NA	NA	NA	37	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	0.075000	0.676617	
mm_8129.1	chr1	136230245	136230445	-	1	NA	NA	NA	3935	NM_028872	67313	Mm.36763	NM_028872	ENSMUSG00000041605	5730559C18Rik	1700034M08Rik|4933426C09Rik|AI586180|D1Mgi54	RIKEN cDNA 5730559C18 gene	protein-coding	0.030000	0.631841	
mm_36031.1	chr4	57143033	57143233	-	1	NA	NA	NA	23	NM_019427	54357	Mm.28217	NM_019427	ENSMUSG00000028434	Epb41l4b	6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2	erythrocyte membrane protein band 4.1 like 4b	protein-coding	0.185000	0.855721	
mm_4824.1	chr1	185454888	185455088	+	1	NA	NA	NA	140	NM_001033286	226781	Mm.227117	NM_001033286	ENSMUSG00000026614	Slc30a10	E130106K10Rik|Gm212	solute carrier family 30, member 10	protein-coding	0.080000	0.696517	-35(AAGCATAAAAGG,-,0.00)
mm_145161.1	chr18	46601883	46602083	+	1	NA	NA	NA	4279	NM_010120	13664	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.020000	0.552239	55(CCTTTTAGGGGA,+,0.00)
mm_163122.1	chr11	76901929	76902129	+	1	NA	NA	NA	-2516	NM_025655	66601	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.010000	0.417910	
mm_26086.1	chr3	136692228	136692428	+	1	NA	NA	NA	22262	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.020000	0.437811	
mm_128472.1	chr15	50882716	50882916	-	1	NA	NA	NA	6233	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.030000	0.412935	
mm_112009.1	chr12	110978532	110978732	-	1	NA	NA	NA	389	NM_175207	74251	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0.085000	0.691542	
mm_17609.1	chr2	30920278	30920478	-	1	NA	NA	NA	-17081	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.025000	0.487562	-96(TGCCATAAAAAA,-,0.00)
mm_92939.1	chr10	84554252	84554452	-	1	NA	NA	NA	-1014	NR_040658	442847	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	0.005000	0.442786	
mm_112795.1	chr13	20406250	20406450	+	1	NA	NA	NA	-66640	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.005000	0.298507	
mm_70834.1	chr8	23153332	23153532	+	1	NA	NA	NA	161	NM_029002	74561	Mm.290028	NM_029002	ENSMUSG00000063672	Nkx6-3	9130417I07Rik|Nkx6.3	NK6 homeobox 3	protein-coding	0.025000	0.621891	
mm_144357.1	chr18	17018978	17019178	+	1	NA	NA	NA	-16430	NR_130158	75433	Mm.60907	NR_130158	ENSMUSG00000087170	1700001G01Rik	-	RIKEN cDNA 1700001G01 gene	ncRNA	0.015000	0.517413	
mm_8196.1	chr1	138119714	138119914	-	1	NA	NA	NA	55312	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.005000	0.388060	
mm_95525.1	chr11	52231935	52232135	+	1	NA	NA	NA	40	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.135000	0.671642	-31(TGCTATAAAAGG,-,0.00)
mm_103684.1	chr11	79482243	79482443	-	1	NA	NA	NA	1688	NR_045305	104522	Mm.436987	NR_045305	ENSMUSG00000091523	AU040972	AU040954	expressed sequence AU040972	ncRNA	0.005000	0.378109	
mm_16964.1	chr2	17689678	17689878	-	1	NA	NA	NA	41290	NM_028757	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0.000000	0.472637	
mm_50029.1	chr6	41129994	41130194	+	1	NA	NA	NA	-94585	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.010000	0.452736	-43(TTTTTTATAGAC,+,0.00)
mm_134510.1	chr16	19067040	19067240	-	1	NA	NA	NA	190390	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.005000	0.492537	-82(GCCTATAAAAGG,-,0.00)
mm_34736.1	chr4	152199713	152199913	+	1	NA	NA	NA	-31	NM_001146058	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.005000	0.537313	
mm_170256.1	chr18	12898305	12898505	+	1	NA	NA	NA	-18426	NM_001252489	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.050000	0.472637	
mm_123076.1	chr14	55722102	55722302	-	1	NA	NA	NA	-26	NM_019519	56187	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0.105000	0.701493	69(CTCTCTATATGC,-,0.00)
mm_56645.1	chr6	113377286	113377486	-	1	NA	NA	NA	134	NM_133932	101206	Mm.266811	NM_133932	ENSMUSG00000048930	Tada3	1110004B19Rik|ADA3|AI987856|Tada3l	transcriptional adaptor 3	protein-coding	0.030000	0.572139	
mm_107312.1	chr12	31264895	31265095	+	1	NA	NA	NA	-299	NM_008482	16777	Mm.172674	NM_008482	ENSMUSG00000002900	Lamb1	C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1	laminin B1	protein-coding	0.075000	0.606965	
mm_55408.1	chr6	61180093	61180293	-	1	NA	NA	NA	-132	NM_001164316	232035	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding	0.160000	0.751244	
mm_134702.1	chr16	22811306	22811506	-	1	NA	NA	NA	4	NM_009967	12970	Mm.6253	NM_009967	ENSMUSG00000033501	Crygs	AI327013|Opj|rncat	crystallin, gamma S	protein-coding	0.005000	0.447761	
mm_91139.1	chr10	19850789	19850989	-	1	NA	NA	NA	570	NM_029529	76157	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	0.070000	0.651741	
mm_121821.1	chr14	20471353	20471553	-	1	NA	NA	NA	8680	NM_001110794	11750	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	0.015000	0.606965	
mm_153164.1	chr19	34493104	34493304	-	1	NA	NA	NA	-18069	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.010000	0.452736	
mm_128703.1	chr15	63611118	63611318	-	1	NA	NA	NA	-131610	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA	0.010000	0.427861	61(GGCTTTTTATGG,-,0.00),63(CTTTTTATGGTT,+,0.00)
mm_168710.1	chr11	99932414	99932614	+	1	NA	NA	NA	-3777	NM_001025244	432602	Mm.246878	NM_001025244	ENSMUSG00000051481	Krtap31-2	OTTMUSG00000002177	keratin associated protein 31-2	protein-coding	0.045000	0.502488	
mm_89494.1	chr10	93833724	93833924	+	1	NA	NA	NA	2269	NM_001206851	327799	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.115000	0.726368	
mm_29142.1	chr3	105928670	105928870	-	1	NA	NA	NA	3894	NM_001033780	433638	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	0.030000	0.482587	
mm_70690.1	chr8	15011349	15011549	+	1	NA	NA	NA	424	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.105000	0.726368	
mm_92112.1	chr10	63203772	63203972	-	1	NA	NA	NA	80	NM_182992	68802	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	0.040000	0.517413	
mm_64216.1	chr7	141539683	141539883	+	1	NA	NA	NA	74	NM_026522	68038	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0.090000	0.636816	
mm_38263.1	chr4	136880315	136880515	-	1	NA	NA	NA	5762	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.025000	0.547264	
mm_29109.1	chr3	104863723	104863923	-	1	NA	NA	NA	682	NM_009797	12340	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	0.010000	0.457711	
mm_89090.1	chr10	84109960	84110160	+	1	NA	NA	NA	330411	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.010000	0.427861	
mm_14142.1	chr2	126545514	126545714	+	1	NA	NA	NA	-7410	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0.015000	0.388060	
mm_134774.1	chr16	23973129	23973329	-	1	NA	NA	NA	15383	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.015000	0.457711	
mm_159224.1	chr2	129800448	129800648	+	1	NA	NA	NA	31	NM_001038635	67333	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	0.095000	0.666667	
mm_60352.1	chr7	44374211	44374411	+	1	NA	NA	NA	719	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.030000	0.616915	
mm_8263.1	chr1	139255660	139255860	-	1	NA	NA	NA	121316	NM_133239	170788	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	0.020000	0.507463	
mm_441.1	chr1	34849607	34849807	+	1	NA	NA	NA	-252	NM_175421	226971	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.010000	0.412935	12(TGGTTTTTAAGC,-,0.00)
mm_25226.1	chr3	103859933	103860133	+	1	NA	NA	NA	238	NR_104070	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.010000	0.512438	
mm_4061.1	chr1	165864532	165864732	+	1	NA	NA	NA	70316	NM_198933	18986	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0.005000	0.482587	
mm_93439.1	chr10	109790079	109790279	-	1	NA	NA	NA	210040	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.005000	0.477612	
mm_90144.1	chr10	118141426	118141626	+	1	NA	NA	NA	-261	NM_001162904	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.050000	0.587065	-92(TCCTTTATGGAC,+,0.00)
mm_121845.1	chr14	20618252	20618452	-	1	NA	NA	NA	2	NM_030180	78787	Mm.301173	NM_030180	ENSMUSG00000034235	Usp54	4930429G18Rik|AI115571|C030002J06Rik	ubiquitin specific peptidase 54	protein-coding	0.015000	0.492537	
mm_130533.1	chr15	98934376	98934576	-	1	NA	NA	NA	-86	NM_011654	22143	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.125000	0.711443	
mm_31192.1	chr4	43578848	43579048	+	1	NA	NA	NA	-84	NM_172692	230101	Mm.229444	NM_172692	ENSMUSG00000028467	Gba2	F630034E04	glucosidase beta 2	protein-coding	0.110000	0.661692	
mm_120235.1	chr14	62887158	62887358	+	1	NA	NA	NA	21716	NR_105860	102465311		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.010000	0.368159	
mm_69380.1	chr7	131321961	131322161	-	1	NA	NA	NA	231	NM_008411	16433	Mm.142717	NM_008411	ENSMUSG00000040205	Cuzd1	Erg-1|Itmap1|Uo-44|Usg|Utczp	CUB and zona pellucida-like domains 1	protein-coding	0.015000	0.527363	
mm_68496.1	chr7	111076291	111076491	-	1	NA	NA	NA	6639	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.010000	0.442786	-95(CCTTTTCTGGGC,+,0.00)
mm_62571.1	chr7	104244689	104244889	+	1	NA	NA	NA	332	NM_030684	94094	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	0.015000	0.447761	
mm_108565.1	chr12	84773156	84773356	+	1	NA	NA	NA	-14	NM_028863	74316	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0.060000	0.636816	
mm_142591.1	chr17	46751982	46752182	-	1	NA	NA	NA	132	NM_001305989	72029	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	0.100000	0.696517	
mm_3388.1	chr1	140245955	140246155	+	1	NA	NA	NA	-202	NM_001081027	240776	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0.060000	0.671642	
mm_136364.1	chr16	92793850	92794050	-	1	NA	NA	NA	32124	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.025000	0.522388	
mm_3612.1	chr1	151947616	151947816	+	1	NA	NA	NA	142604	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik|ENSMUSG00000073540	RIKEN cDNA 1700025G04 gene	protein-coding	0.010000	0.502488	-97(GGCCCTTTAAAG,-,0.00),-96(GCCCTTTAAAGG,-,0.00),-95(CCCTTTAAAGGA,+,0.00),-95(CCCTTTAAAGGA,-,0.00),-94(CCTTTAAAGGAC,+,0.00)
mm_83892.1	chr9	56027340	56027540	-	1	NA	NA	NA	-196	NR_033529	665005	Mm.384788	NR_033529		Gm7444	EG665005	ring finger protein 19A pseudogene	pseudo	0.055000	0.547264	64(GTTTTTATAGTA,+,0.00)
mm_35954.1	chr4	53128024	53128224	-	1	NA	NA	NA	31771	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.015000	0.452736	
mm_14307.1	chr2	129129687	129129887	+	1	NA	NA	NA	87	NM_025395	66170	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	0.055000	0.562189	
mm_79601.1	chr9	58488473	58488673	+	1	NA	NA	NA	-30	NM_176921	319477	Mm.153674	NM_176921	ENSMUSG00000066607	6030419C18Rik	-	RIKEN cDNA 6030419C18 gene	protein-coding	0.100000	0.686567	
mm_130713.1	chr15	101047269	101047469	-	1	NA	NA	NA	7030	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.070000	0.646766	
mm_26307.1	chr3	142512031	142512231	+	1	NA	NA	NA	15197	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.010000	0.432836	
mm_158645.1	chrX	155338381	155338581	-	1	NA	NA	NA	-21	NM_001313711	53381	Mm.247542	NM_016764	ENSMUSG00000025289	Prdx4	AOE372|Prx-iv|Prx4|TRANK	peroxiredoxin 4	protein-coding	0.100000	0.681592	
mm_167892.1	chrX	64483067	64483267	+	1	NA	NA	NA	-206171	NM_178740	245446	Mm.101707	NM_178740	ENSMUSG00000046699	Slitrk4	6430513G13|D930039I09Rik	SLIT and NTRK-like family, member 4	protein-coding	0.000000	0.522388	
mm_156794.1	chrX	162901144	162901344	+	1	NA	NA	NA	-316	NM_001168568	55936	Mm.2065	NM_018737	ENSMUSG00000031360	Ctps2	A830031M15Rik|AI326475|Ctpsh	cytidine 5'-triphosphate synthase 2	protein-coding	0.005000	0.452736	-70(TCTTTTAAACAC,+,0.00)
mm_19929.1	chr2	116064665	116064865	-	1	NA	NA	NA	-146	NM_001159570	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.020000	0.457711	
mm_64464.1	chr7	142665712	142665912	+	1	NA	NA	NA	1004	NM_001315488	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.010000	0.527363	
mm_21556.1	chr2	164083668	164083868	-	1	NA	NA	NA	9590	NM_021420	58231	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.035000	0.552239	
mm_35417.1	chr4	35035512	35035712	-	1	NA	NA	NA	-116443	NM_199157	387510	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.010000	0.398010	
mm_96204.1	chr11	62130986	62131186	+	1	NA	NA	NA	54062	NM_001029936	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.000000	0.422886	69(TCCTTAATAGAC,+,0.00)
mm_51041.1	chr6	65601506	65601706	+	1	NA	NA	NA	11208	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.010000	0.452736	-89(GTTTATAAAAAG,-,0.00)
mm_127008.1	chr15	95830008	95830208	+	1	NA	NA	NA	39265	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.030000	0.552239	
mm_50934.1	chr6	57702553	57702753	+	1	NA	NA	NA	198	NM_133737	71835	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.040000	0.517413	
mm_50085.1	chr6	41523680	41523880	+	1	NA	NA	NA	2004	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.477612	
mm_151287.1	chr19	55286314	55286514	+	1	NA	NA	NA	29618	NM_025883	66980	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369	zinc finger, DHHC domain containing 6	protein-coding	0.010000	0.427861	
mm_163863.1	chr14	19418734	19418934	-	1	NA	NA	NA	183753	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.363184	
mm_90136.1	chr10	117846045	117846245	+	1	NA	NA	NA	-171	NM_024457	215449	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.145000	0.810945	
mm_71777.1	chr8	66471451	66471651	+	1	NA	NA	NA	14956	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.000000	0.348259	
mm_72841.1	chr8	88300279	88300479	+	1	NA	NA	NA	6175	NM_001037724	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.020000	0.626866	
mm_3720.1	chr1	154201456	154201656	+	1	NA	NA	NA	369	NM_001204908	100503355	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	ENSMUSG00000066797|Gm10178|Gm203	zinc finger protein 648	protein-coding	0.020000	0.651741	
mm_139500.1	chr17	56289478	56289678	+	1	NA	NA	NA	933	NM_025836	66905	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	0.020000	0.517413	
mm_113897.1	chr13	49195841	49196041	+	1	NA	NA	NA	8394	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.005000	0.557214	
mm_99336.1	chr11	101468087	101468287	+	1	NA	NA	NA	-151	NM_009708	11858	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn	Rho family GTPase 2	protein-coding	0.145000	0.835821	
mm_57255.1	chr6	123283508	123283708	-	1	NA	NA	NA	6263	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.452736	
mm_81815.1	chr9	118040499	118040699	+	1	NA	NA	NA	77	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.125000	0.691542	-99(CCCTATATAGTC,+,0.00)
mm_477.1	chr1	36511786	36511986	+	1	NA	NA	NA	19	NM_053186	94218	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	0.090000	0.701493	
mm_89031.1	chr10	82699134	82699334	+	1	NA	NA	NA	227	NM_001081218	67933	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838	host cell factor C2	protein-coding	0.120000	0.686567	
mm_9932.1	chr1	189922248	189922448	-	1	NA	NA	NA	-60	NM_026796	226830	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.170000	0.810945	
mm_14441.1	chr2	130906432	130906632	+	1	NA	NA	NA	37	NM_009730	11990	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	0.135000	0.761194	
mm_119701.1	chr14	53738205	53738405	+	1	NA	NA	NA	515624	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.452736	
mm_155552.1	chrX	74429597	74429797	+	1	NA	NA	NA	16	NM_010547	16151	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	0.050000	0.547264	
mm_172667.1	chr8	43306846	43307046	-	1	NA	NA	NA	63	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.045000	0.532338	
mm_123826.1	chr14	70626744	70626944	-	1	NA	NA	NA	221	NM_001252662	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.040000	0.606965	
mm_46541.1	chr5	105720549	105720749	-	1	NA	NA	NA	19839	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.010000	0.442786	
mm_171073.1	chr3	116597531	116597731	-	1	NA	NA	NA	2673	NM_001289571	72776	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	0.025000	0.507463	
mm_10182.1	chr2	4739218	4739418	+	1	NA	NA	NA	21487	NM_178663	209645	Mm.149539	NM_178663	ENSMUSG00000048186	Bend7	1110017O21Rik|E130319B15Rik	BEN domain containing 7	protein-coding	0.015000	0.477612	
mm_29789.1	chr3	127552926	127553126	-	1	NA	NA	NA	323	NM_138593	28036	Mm.291032	NM_138593	ENSMUSG00000027968	Larp7	C330027G06Rik|D3Wsu161e	La ribonucleoprotein domain family, member 7	protein-coding	0.105000	0.731343	
mm_16372.1	chr2	178119035	178119235	+	1	NA	NA	NA	160	NM_001177790	74189	Mm.44413	NM_028806	ENSMUSG00000027525	Phactr3	1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224	phosphatase and actin regulator 3	protein-coding	0.100000	0.771144	
mm_103275.1	chr11	72135721	72135921	-	1	NA	NA	NA	68	NM_001024927	327958	Mm.351793	NM_001024927	ENSMUSG00000040543	Pitpnm3	A330068P14Rik|AI848332|Ackr6|Gm880	PITPNM family member 3	protein-coding	0.195000	0.830846	-31(CTCCTTTAAGGG,-,0.00),-29(CCTTTAAGGGAG,+,0.00)
mm_12080.1	chr2	59811629	59811829	+	1	NA	NA	NA	70877	NM_001159636	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.020000	0.437811	49(GCCTTTATAAAC,+,0.00),49(GCCTTTATAAAC,-,0.00),51(CTTTATAAACAC,+,0.00)
mm_153829.1	chr19	46317922	46318122	-	1	NA	NA	NA	8844	NM_001347454	73728	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.195000	0.830846	
mm_110878.1	chr12	74316996	74317196	-	1	NA	NA	NA	19622	NM_198866	386753	Mm.341686	NM_198866	ENSMUSG00000029878	Dbpht2	Spot2	DNA binding protein with his-thr domain	protein-coding	0.030000	0.487562	
mm_145169.1	chr18	46906876	46907076	+	1	NA	NA	NA	-14839	NM_001033446	381142	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	0.010000	0.383085	40(GCTTAAATGGCA,+,0.00)
mm_73616.1	chr8	110122496	110122696	+	1	NA	NA	NA	42862	NM_175480	234725	Mm.87487	NM_175480	ENSMUSG00000044676	Zfp612	B230354B21Rik	zinc finger protein 612	protein-coding	0.025000	0.313433	
mm_155414.1	chrX	73490675	73490875	+	1	NA	NA	NA	7174	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.000000	0.527363	
mm_58355.1	chr6	147675650	147675850	-	1	NA	NA	NA	-14491	NR_033636	100039727	Mm.396220	NR_033636	ENSMUSG00000085077	1700049E15Rik	Gm15761|OTTMUSG00000026044	RIKEN cDNA 1700049E15 gene	ncRNA	0.000000	0.502488	
mm_57380.1	chr6	124814174	124814374	-	1	NA	NA	NA	22	NM_009415	21991	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.050000	0.592040	
mm_172825.1	chr9	17030128	17030328	+	1	NA	NA	NA	-651997	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.005000	0.402985	
mm_165903.1	chr4	49536704	49536904	-	1	NA	NA	NA	12742	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.015000	0.497512	
mm_130678.1	chr15	100675343	100675543	-	1	NA	NA	NA	-5943	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.025000	0.542289	
mm_26249.1	chr3	141615157	141615357	+	1	NA	NA	NA	149693	NM_001293561	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.005000	0.333333	
mm_26560.1	chr3	146499982	146500182	+	1	NA	NA	NA	246	NM_010318	14707	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	0.145000	0.796020	
mm_88727.1	chr10	80179622	80179822	+	1	NA	NA	NA	240	NM_007909	13637	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0.180000	0.820896	
mm_173013.1	chrM	517	717	+	1	NA	NA	NA	NA	NA									0.020000	0.373134	58(GCCTATATACCG,+,0.00)
mm_165130.1	chr2	7395852	7396052	-	1	NA	NA	NA	48	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.025000	0.417910	
mm_150350.1	chr19	34644150	34644350	+	1	NA	NA	NA	3361	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.005000	0.482587	
mm_136165.1	chr16	88563036	88563236	-	1	NA	NA	NA	47	NM_018778	54420	Mm.25836	NM_018778	ENSMUSG00000050520	Cldn8	AI648025	claudin 8	protein-coding	0.020000	0.557214	
mm_131751.1	chr16	22402782	22402982	+	1	NA	NA	NA	36688	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.000000	0.497512	14(GCCTCTATAAGG,-,0.00),16(CTCTATAAGGCC,+,0.00)
mm_53458.1	chr6	134830228	134830428	+	1	NA	NA	NA	129	NM_177687	232430	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	0.080000	0.716418	
mm_158418.1	chrX	137122053	137122253	-	1	NA	NA	NA	-1827	NM_007957	13984	Mm.8017	NM_007957	ENSMUSG00000023443	Esx1	Spx1	extraembryonic, spermatogenesis, homeobox 1	protein-coding	0.040000	0.547264	
mm_50849.1	chr6	54866360	54866560	+	1	NA	NA	NA	49544	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.000000	0.407960	
mm_29087.1	chr3	104523592	104523792	-	1	NA	NA	NA	-11774	NM_001025067	269473	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0.005000	0.492537	
mm_23596.1	chr3	65108878	65109078	+	1	NA	NA	NA	-390	NM_010597	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.010000	0.557214	-67(CCTTTTCAACTC,+,0.00),69(GCTCCTTAAAGG,-,0.00),70(CTCCTTAAAGGG,-,0.00),72(CCTTAAAGGGAC,+,0.00)
mm_52128.1	chr6	97943231	97943431	+	1	NA	NA	NA	13514	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.020000	0.427861	
mm_144727.1	chr18	35235408	35235608	+	1	NA	NA	NA	-20484	NM_178005	107065	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0.025000	0.502488	
mm_109711.1	chr12	113446308	113446508	+	1	NA	NA	NA	-43157	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.412935	
mm_31280.1	chr4	45848250	45848450	+	1	NA	NA	NA	-466	NM_001305421	74152	Mm.63645	NM_028788	ENSMUSG00000028327	Stra6l	1300002K09Rik|Rbpr2	STRA6-like	protein-coding	0.005000	0.567164	
mm_134710.1	chr16	22894271	22894471	-	1	NA	NA	NA	15	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.035000	0.597015	
mm_16645.1	chr2	6130042	6130242	-	1	NA	NA	NA	43	NM_144883	227545	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0.160000	0.766169	
mm_76047.1	chr8	77610603	77610803	-	1	NA	NA	NA	-50	NM_145599	234463	Mm.273578	NM_145599	ENSMUSG00000031617	Tmem184c	8430433H16Rik|AI645453|AL033298|BC004056|Tmem34	transmembrane protein 184C	protein-coding	0.050000	0.527363	
mm_114107.1	chr13	54789405	54789605	+	1	NA	NA	NA	100	NM_028841	74257	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0.100000	0.751244	
mm_137015.1	chr17	17832873	17833073	+	1	NA	NA	NA	1998	NM_001162909	75202	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0.000000	0.358209	
mm_78638.1	chr9	40269134	40269334	+	1	NA	NA	NA	18	NM_178227	235281	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.050000	0.631841	
mm_16323.1	chr2	174304629	174304829	+	1	NA	NA	NA	6870	NM_001310085	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.000000	0.353234	
mm_29004.1	chr3	101592394	101592594	-	1	NA	NA	NA	12213	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.035000	0.567164	
mm_11704.1	chr2	36136356	36136556	+	1	NA	NA	NA	58	NM_026422	67871	Mm.378232	NM_026422	ENSMUSG00000026887	Mrrf	2400002D02Rik|MRFF|MTRRF|RRF	mitochondrial ribosome recycling factor	protein-coding	0.065000	0.626866	
mm_136832.1	chr17	12741292	12741492	+	1	NA	NA	NA	81	NR_027784	104103	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.050000	0.562189	
mm_52808.1	chr6	121342803	121343003	+	1	NA	NA	NA	-173	NM_001347433	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.015000	0.572139	
mm_92400.1	chr10	76623225	76623425	-	1	NA	NA	NA	79	NM_146007	12834	Mm.1949	NM_146007	ENSMUSG00000020241	Col6a2	Col6a-2	collagen, type VI, alpha 2	protein-coding	0.075000	0.686567	
mm_13704.1	chr2	117145106	117145306	+	1	NA	NA	NA	24135	NM_033524	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.005000	0.348259	-23(GAGTATAAAAGA,-,0.00)
mm_69227.1	chr7	127649250	127649450	-	1	NA	NA	NA	-34917	NM_177226	320683	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0.015000	0.517413	
mm_46584.1	chr5	107597510	107597710	-	1	NA	NA	NA	29	NM_133248	170823	Mm.41417	NM_133248	ENSMUSG00000029276	Glmn	9330160J16Rik|AW227515|Fap48|Fap68	glomulin, FKBP associated protein	protein-coding	0.110000	0.776119	
mm_143818.1	chr17	83846652	83846852	-	1	NA	NA	NA	38	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.055000	0.567164	
mm_61736.1	chr7	82174712	82174912	+	1	NA	NA	NA	-85096	NM_001277955	20408	Mm.736	NM_017400	ENSMUSG00000030638	Sh3gl3	EEN-B2|SH3P13|Sh3d2c|Sh3d2c2	SH3-domain GRB2-like 3	protein-coding	0.120000	0.691542	
mm_42561.1	chr5	117141790	117141990	+	1	NA	NA	NA	8302	NM_183306	330177	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.005000	0.388060	-42(GGCCTTATAAGC,-,0.00),-40(CCTTATAAGCAA,+,0.00),81(GTTTTTAAAGTA,+,0.00)
mm_136357.1	chr16	92775200	92775400	-	1	NA	NA	NA	50774	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.015000	0.437811	
mm_169610.1	chr15	37271346	37271546	+	1	NA	NA	NA	38410	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	0.020000	0.472637	76(GTTTTTAAAGTA,+,0.00)
mm_118669.1	chr14	21995660	21995860	+	1	NA	NA	NA	-6159	NM_145459	218820	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.035000	0.547264	
mm_93319.1	chr10	99117052	99117252	-	1	NA	NA	NA	9017	NM_015737	14426	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.010000	0.452736	
mm_104684.1	chr11	97718315	97718515	-	1	NA	NA	NA	14981	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	0.015000	0.537313	
mm_57196.1	chr6	122850223	122850423	-	1	NA	NA	NA	5834	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.030000	0.467662	-31(TCATTTATACCC,+,0.00)
mm_41190.1	chr5	88327812	88328012	+	1	NA	NA	NA	10600	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.010000	0.393035	
mm_89148.1	chr10	86021904	86022104	+	1	NA	NA	NA	75	NM_153195	69754	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	0.140000	0.701493	
mm_48306.1	chr5	138564589	138564789	-	1	NA	NA	NA	5	NM_029693	76658	Mm.73235	NM_029693	ENSMUSG00000029526	1700123K08Rik	-	RIKEN cDNA 1700123K08 gene	protein-coding	0.010000	0.507463	
mm_168962.1	chr12	80317857	80318057	-	1	NA	NA	NA	-57576	NM_001346669	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.035000	0.507463	-29(TTCTATAAAAAC,-,0.00)
mm_130397.1	chr15	97975817	97976017	-	1	NA	NA	NA	11688	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.025000	0.492537	
mm_152573.1	chr19	11592358	11592558	-	1	NA	NA	NA	12346	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.010000	0.363184	-67(CCATTTATAAGC,+,0.00),-67(CCATTTATAAGC,-,0.00),-43(TGATCTAAAAGG,-,0.00)
mm_6578.1	chr1	75217199	75217399	-	1	NA	NA	NA	1995	NM_001313723	22145	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	0.020000	0.557214	
mm_12980.1	chr2	90783119	90783319	+	1	NA	NA	NA	475	NM_178755	271813	Mm.61146	NM_178755	ENSMUSG00000040812	Agbl2	4930524K04|A430081C19Rik|CCP2	ATP/GTP binding protein-like 2	protein-coding	0.060000	0.597015	33(CCTTTTCTGCGG,+,0.00)
mm_30714.1	chr4	12906701	12906901	+	1	NA	NA	NA	-36	NM_173746	208820	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding	0.045000	0.631841	
mm_76089.1	chr8	79399423	79399623	-	1	NA	NA	NA	-55	NM_008539	17125	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.110000	0.676617	
mm_107836.1	chr12	69296637	69296837	+	1	NA	NA	NA	56	NM_027117	69554	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0.155000	0.771144	
mm_165641.1	chr3	75270014	75270214	-	1	NA	NA	NA	-36	NM_026460	67931	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.005000	0.348259	
mm_150620.1	chr19	41050314	41050514	+	1	NA	NA	NA	21139	NM_009345	21673	Mm.25620	NM_009345	ENSMUSG00000025014	Dntt	Tdt	deoxynucleotidyltransferase, terminal	protein-coding	0.000000	0.447761	
mm_35967.1	chr4	53144133	53144333	-	1	NA	NA	NA	15662	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.010000	0.557214	
mm_14808.1	chr2	145903797	145903997	+	1	NA	NA	NA	656	NM_001141965	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.020000	0.442786	
mm_37778.1	chr4	130167956	130168156	-	1	NA	NA	NA	6746	NM_001168333	94242	Mm.15801	NM_023476	ENSMUSG00000028776	Tinagl1	1110021J17Rik|AZ-1|AZ1|Arg1|Lcn7|TARP|Tinagl	tubulointerstitial nephritis antigen-like 1	protein-coding	0.015000	0.452736	
mm_80233.1	chr9	72676469	72676669	+	1	NA	NA	NA	14222	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.025000	0.422886	
mm_146471.1	chr18	88894362	88894562	+	1	NA	NA	NA	-255	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.045000	0.651741	
mm_55360.1	chr6	56923774	56923974	-	1	NA	NA	NA	58	NM_026004	107569	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0.160000	0.776119	
mm_89406.1	chr10	90631970	90632170	+	1	NA	NA	NA	55379	NM_181398	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.000000	0.393035	
mm_25413.1	chr3	107368280	107368480	+	1	NA	NA	NA	-35091	NM_001045807	229700	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.010000	0.517413	
mm_169934.1	chr16	60747090	60747290	-	1	NA	NA	NA	-141659	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0.010000	0.502488	
mm_99672.1	chr11	105974549	105974749	+	1	NA	NA	NA	-559	NM_009598	11421	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0.005000	0.616915	
mm_115390.1	chr13	113293080	113293280	+	1	NA	NA	NA	83521	NM_023612	71690	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.150000	0.771144	
mm_108187.1	chr12	76571456	76571656	+	1	NA	NA	NA	-23631	NR_046044	100504549	Mm.440349	NR_046044		AI463170	-	expressed sequence AI463170	ncRNA	0.015000	0.577114	
mm_35893.1	chr4	49549125	49549325	-	1	NA	NA	NA	321	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.005000	0.437811	
mm_29342.1	chr3	108226541	108226741	-	1	NA	NA	NA	-42	NM_008596	17306	Mm.316885	NM_008596	ENSMUSG00000027887	Sypl2	AI552439|Mg29	synaptophysin-like 2	protein-coding	0.120000	0.661692	
mm_104859.1	chr11	99385191	99385391	-	1	NA	NA	NA	4073	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.000000	0.298507	
mm_172117.1	chr6	3200963	3201163	+	1	NA	NA	NA	-87456	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.050000	0.487562	
mm_128474.1	chr15	50888970	50889170	-	1	NA	NA	NA	-21	NM_001310485	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.050000	0.611940	
mm_25955.1	chr3	132085697	132085897	+	1	NA	NA	NA	505	NM_020265	56811	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.055000	0.601990	
mm_62473.1	chr7	101836979	101837179	+	1	NA	NA	NA	745	NM_001122739	16332	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0.060000	0.681592	
mm_3441.1	chr1	150102596	150102796	+	1	NA	NA	NA	2665	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.015000	0.477612	
mm_35116.1	chr4	10988152	10988352	-	1	NA	NA	NA	19367	NM_175175	71801	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.000000	0.398010	
mm_117854.1	chr13	98803697	98803897	-	1	NA	NA	NA	11652	NM_172591	218503	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.005000	0.318408	
mm_107859.1	chr12	69724863	69725063	+	1	NA	NA	NA	1	NM_026536	68055	Mm.27844	NM_026536	ENSMUSG00000054894	Atp5s	1110015E18Rik|ATPW	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit S	protein-coding	0.115000	0.691542	
mm_26907.1	chr3	19312103	19312303	-	1	NA	NA	NA	-881	NM_001122759	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.015000	0.472637	
mm_90838.1	chr10	8518691	8518891	-	1	NA	NA	NA	34	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.090000	0.721393	
mm_49958.1	chr6	40634736	40634936	+	1	NA	NA	NA	6005	NM_001171003	232714	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding	0.000000	0.462687	
mm_39802.1	chr5	30623072	30623272	+	1	NA	NA	NA	-24764	NR_049199	100885838		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.035000	0.557214	
mm_74916.1	chr8	25544900	25545100	-	1	NA	NA	NA	11083	NR_110510	102633315	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	OTTMUSG00000031030	predicted gene 16159	ncRNA	0.025000	0.532338	
mm_140182.1	chr17	80944561	80944761	+	1	NA	NA	NA	29	NM_026516	68027	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0.120000	0.751244	
mm_165220.1	chr2	47741943	47742143	+	1	NA	NA	NA	-1072066	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.005000	0.532338	
mm_117112.1	chr13	60177436	60177636	-	1	NA	NA	NA	-1	NM_008086	14451	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	0.065000	0.552239	
mm_93818.1	chr10	121472677	121472877	-	1	NA	NA	NA	3473	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.010000	0.427861	
mm_57323.1	chr6	124733082	124733282	-	1	NA	NA	NA	-28	NM_013545	15170	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.030000	0.636816	
mm_35071.1	chr4	6903671	6903871	-	1	NA	NA	NA	86952	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.025000	0.412935	
mm_91150.1	chr10	20312159	20312359	-	1	NA	NA	NA	-210	NM_001025392	72567	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0.085000	0.656716	
mm_129665.1	chr15	81247878	81248078	-	1	NA	NA	NA	-7	NR_077231	78102	Mm.296832	NR_077229		8430426J06Rik	-	RIKEN cDNA 8430426J06 gene	ncRNA	0.025000	0.522388	-48(TCCCAGAAAAGG,-,0.00)
mm_151967.1	chr19	5802571	5802771	-	1	NA	NA	NA	1	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.055000	0.527363	
mm_79535.1	chr9	57777748	57777948	+	1	NA	NA	NA	-11988	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.010000	0.512438	
mm_148332.1	chr18	84087609	84087809	-	1	NA	NA	NA	-449	NM_146090	225791	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.130000	0.706468	
mm_7810.1	chr1	131688498	131688698	-	1	NA	NA	NA	-97	NM_145509	226421	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0.020000	0.567164	
mm_123345.1	chr14	63138951	63139151	-	1	NA	NA	NA	16589	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.005000	0.497512	
mm_151705.1	chr19	4498460	4498660	-	1	NA	NA	NA	23	NM_027237	69861	Mm.282978	NM_027237	ENSMUSG00000042041	2010003K11Rik	-	RIKEN cDNA 2010003K11 gene	protein-coding	0.015000	0.557214	
mm_11069.1	chr2	27676874	27677074	+	1	NA	NA	NA	-227	NM_011305	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.115000	0.741294	
mm_87176.1	chr10	38965523	38965723	+	1	NA	NA	NA	108	NM_010681	16775	Mm.258065	NM_010681	ENSMUSG00000019846	Lama4	-	laminin, alpha 4	protein-coding	0.055000	0.621891	
mm_156496.1	chrX	144336121	144336321	+	1	NA	NA	NA	18255	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.010000	0.517413	
mm_111976.1	chr12	110086285	110086485	-	1	NA	NA	NA	71688	NR_045466	67280	Mm.390495	NR_045466		3110009F21Rik	-	RIKEN cDNA 3110009F21 gene	ncRNA	0.015000	0.542289	
mm_173000.1	chrM	69	269	+	1	NA	NA	NA	NA	NA									0.015000	0.378109	
mm_71423.1	chr8	46490905	46491105	+	1	NA	NA	NA	39	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.015000	0.587065	
mm_32881.1	chr4	118875169	118875369	+	1	NA	NA	NA	6486	NM_001011856	258159	Mm.388910	NM_001011856	ENSMUSG00000073769	Olfr1331	MOR259-3P	olfactory receptor 1331	protein-coding	0.000000	0.447761	
mm_46552.1	chr5	106624299	106624499	-	1	NA	NA	NA	72431	NM_026856	52397	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.005000	0.398010	
mm_14929.1	chr2	151540696	151540896	+	1	NA	NA	NA	-1687	NR_126058	14225	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.000000	0.388060	-6(GCTTTTAAGCCT,+,0.00)
mm_73710.1	chr8	111688510	111688710	+	1	NA	NA	NA	1064	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.025000	0.562189	
mm_118346.1	chr13	114854039	114854239	-	1	NA	NA	NA	35902	NM_001113374	17434	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.015000	0.412935	
mm_145811.1	chr18	65414902	65415102	+	1	NA	NA	NA	-15995	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.015000	0.512438	
mm_131810.1	chr16	22918282	22918482	+	1	NA	NA	NA	0	NM_001083905	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.010000	0.467662	-34(AGATATAAAAGG,-,0.00)
mm_54252.1	chr6	28262318	28262518	-	1	NA	NA	NA	-817	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.040000	0.577114	
mm_158555.1	chrX	147554004	147554204	-	1	NA	NA	NA	-23	NM_001081173	210297	Mm.30506	NM_001081173	ENSMUSG00000031290	Lrch2	AI316885|mKIAA1495	leucine-rich repeats and calponin homology (CH) domain containing 2	protein-coding	0.075000	0.676617	
mm_166520.1	chr6	21986159	21986359	+	1	NA	NA	NA	349	NM_001081351	214642	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.025000	0.442786	38(CAACATAAAAGG,-,0.00),64(GCTTTAAAACCG,+,0.00)
mm_34604.1	chr4	150237600	150237800	+	1	NA	NA	NA	376	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.030000	0.527363	
mm_78452.1	chr9	32264562	32264762	+	1	NA	NA	NA	40413	NM_177379	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.000000	0.378109	
mm_63195.1	chr7	125603546	125603746	+	1	NA	NA	NA	217	NM_021887	60504	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.015000	0.626866	
mm_57911.1	chr6	133105564	133105764	-	1	NA	NA	NA	425	NR_073368	381820	Mm.291762	NM_001163445	ENSMUSG00000072704	Smim10l1	2700089E24Rik|AI662692	small integral membrane protein 10 like 1	protein-coding	0.090000	0.616915	
mm_117882.1	chr13	99344526	99344726	-	1	NA	NA	NA	52	NM_026873	68927	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	0.095000	0.711443	
mm_140780.1	chr17	17883837	17884037	-	1	NA	NA	NA	2	NM_013521	14293	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0.000000	0.422886	
mm_111788.1	chr12	104761415	104761615	-	1	NA	NA	NA	-9563	NM_148948	192119	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	0.035000	0.517413	
mm_166713.1	chr6	118011404	118011604	+	1	NA	NA	NA	-33	NM_001316749	70727	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	0.190000	0.845771	
mm_139030.1	chr17	46161037	46161237	+	1	NA	NA	NA	105	NM_001145979	56055	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.115000	0.766169	
mm_76427.1	chr8	84978009	84978209	-	1	NA	NA	NA	639	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.090000	0.641791	
mm_112467.1	chr13	5867989	5868189	+	1	NA	NA	NA	6600	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.020000	0.343284	
mm_169150.1	chr13	62778841	62779041	+	1	NA	NA	NA	6867	NM_001256065	380850	Mm.439823	NM_001256065	ENSMUSG00000091183	Gm5141	-	predicted gene 5141	protein-coding	0.010000	0.517413	
mm_7154.1	chr1	91456368	91456568	-	1	NA	NA	NA	2860	NM_011066	18627	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.035000	0.497512	
mm_102209.1	chr11	54850407	54850607	-	1	NA	NA	NA	10084	NM_029327	75530	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	0.010000	0.467662	
mm_90109.1	chr10	117268161	117268361	+	1	NA	NA	NA	14011	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.020000	0.522388	-34(ACCTATATAAAG,-,0.00),-32(CTATATAAAGGG,+,0.00),-32(CTATATAAAGGG,-,0.00)
mm_73698.1	chr8	111643417	111643617	+	1	NA	NA	NA	74	NM_011742	22640	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0.090000	0.646766	
mm_54943.1	chr6	48572569	48572769	-	1	NA	NA	NA	133	NM_001347168	71660	Mm.28231	NM_027852	ENSMUSG00000009281	Rarres2	0610007L05Rik|AI303516	retinoic acid receptor responder (tazarotene induced) 2	protein-coding	0.015000	0.522388	
mm_133935.1	chr16	3872295	3872495	-	1	NA	NA	NA	-21	NM_001033159	71063	Mm.379190	NM_001033159	ENSMUSG00000039789	Zfp597	4933407K12Rik|AI462383|AI666357	zinc finger protein 597	protein-coding	0.080000	0.651741	
mm_23076.1	chr3	36469144	36469344	+	1	NA	NA	NA	6280	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.010000	0.522388	
mm_125866.1	chr15	75474417	75474617	+	1	NA	NA	NA	25065	NM_001347049	102637705		NM_001347049	ENSMUSG00000093626	Ly6l	Gm20654	lymphocyte antigen 6 complex, locus L	protein-coding	0.025000	0.606965	
mm_114801.1	chr13	90923046	90923246	+	1	NA	NA	NA	24	NM_024175	66475	Mm.306302	NM_024175	ENSMUSG00000049517	Rps23	2410044J15Rik	ribosomal protein S23	protein-coding	0.075000	0.681592	
mm_37773.1	chr4	129819824	129820024	-	1	NA	NA	NA	-555	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.125000	0.701493	
mm_38261.1	chr4	136880249	136880449	-	1	NA	NA	NA	5828	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.010000	0.527363	
mm_153668.1	chr19	44395934	44396134	-	1	NA	NA	NA	11675	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.000000	0.472637	
mm_86847.1	chr10	21593017	21593217	+	1	NA	NA	NA	-28	NR_027968	67692	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.055000	0.582090	
mm_121316.1	chr14	109545956	109546156	+	1	NA	NA	NA	85826	NR_039542	100628607		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0.005000	0.333333	
mm_92652.1	chr10	80399397	80399597	-	1	NA	NA	NA	34	NM_013595	17192	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.135000	0.766169	
mm_157322.1	chrX	23266679	23266879	-	1	NA	NA	NA	23	NM_001310466	67455	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	0.000000	0.393035	82(TCCTTTTAAAAC,-,0.00),83(CCTTTTAAAACT,+,0.00),84(CTTTTAAAACTG,+,0.00)
mm_32458.1	chr4	107381010	107381210	+	1	NA	NA	NA	13326	NM_028355	72787	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0.030000	0.562189	
mm_133491.1	chr16	90284492	90284692	+	1	NA	NA	NA	-89	NM_001346799	224432	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.155000	0.751244	
mm_19463.1	chr2	92392544	92392744	-	1	NA	NA	NA	39	NM_001202446	19099	Mm.2720	NM_011162	ENSMUSG00000027223	Mapk8ip1	IB1|JIP-1|Jip1|Prkm8ip|Skip|mjip-2a	mitogen-activated protein kinase 8 interacting protein 1	protein-coding	0.010000	0.547264	-58(GGCCCTTTAAAG,-,0.00),-57(GCCCTTTAAAGC,-,0.00),-56(CCCTTTAAAGCA,+,0.00),-55(CCTTTAAAGCAG,+,0.00)
mm_27389.1	chr3	50637326	50637526	-	1	NA	NA	NA	-193813	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.388060	-48(GCTTTTAAGGAT,+,0.00)
mm_163227.1	chr11	102440517	102440717	+	1	NA	NA	NA	7046	NM_199200	217219	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0.045000	0.567164	
mm_101857.1	chr11	48871083	48871283	-	1	NA	NA	NA	163	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding	0.030000	0.472637	
mm_148488.1	chr19	4151574	4151774	+	1	NA	NA	NA	-2972	NM_016933	19265	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	0.015000	0.512438	
mm_117118.1	chr13	60842925	60843125	-	1	NA	NA	NA	21391	NM_178098	214639	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	0.010000	0.407960	
mm_155989.1	chrX	106143590	106143790	+	1	NA	NA	NA	415	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.000000	0.318408	
mm_164554.1	chr17	13867481	13867681	+	1	NA	NA	NA	-80792	NM_001122977	635895	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.020000	0.517413	
mm_66576.1	chr7	45336151	45336351	-	1	NA	NA	NA	982	NM_010473	15464	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.025000	0.477612	
mm_103641.1	chr11	78963323	78963523	-	1	NA	NA	NA	21501	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.015000	0.517413	
mm_159739.1	chr5	66337521	66337721	-	1	NA	NA	NA	44	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.065000	0.656716	
mm_83009.1	chr9	36767479	36767679	-	1	NA	NA	NA	-1	NM_008408	16430	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	0.085000	0.646766	
mm_118780.1	chr14	24081980	24082180	+	1	NA	NA	NA	-6797	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.010000	0.522388	
mm_137864.1	chr17	31296658	31296858	+	1	NA	NA	NA	534	NM_001242427	224674	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.055000	0.611940	
mm_22386.1	chr2	181156932	181157132	-	1	NA	NA	NA	-17	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.070000	0.601990	
mm_119174.1	chr14	32165435	32165635	+	1	NA	NA	NA	-51	NM_001284319	27057	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.055000	0.562189	
mm_102617.1	chr11	62458428	62458628	-	1	NA	NA	NA	68	NM_001039536	327942	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.080000	0.631841	
mm_60970.1	chr7	48788939	48789139	+	1	NA	NA	NA	36	NM_028031	243983	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	0.125000	0.711443	
mm_64172.1	chr7	141456906	141457106	+	1	NA	NA	NA	1818	NM_001163689	66853	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0.020000	0.547264	
mm_5918.1	chr1	55087966	55088166	-	1	NA	NA	NA	-82	NM_008303	15528	Mm.215667	NM_008303	ENSMUSG00000073676	Hspe1	10kDa|Hsp10|mt-cpn10	heat shock protein 1 (chaperonin 10)	protein-coding	0.115000	0.701493	
mm_51869.1	chr6	90552058	90552258	+	1	NA	NA	NA	1310	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.000000	0.527363	
mm_26894.1	chr3	19238383	19238583	-	1	NA	NA	NA	26525	NM_008802	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.000000	0.447761	15(GTCTTTATAGTC,+,0.00)
mm_126986.1	chr15	94543532	94543732	+	1	NA	NA	NA	-28	NM_029926	266632	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	0.050000	0.616915	
mm_36992.1	chr4	110286425	110286625	-	1	NA	NA	NA	309	NM_010488	15572	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein-coding	0.020000	0.497512	
mm_61232.1	chr7	64505262	64505462	+	1	NA	NA	NA	3224	NM_001291167	11784	Mm.4657	NM_007461	ENSMUSG00000030519	Apba2	X11-like|X11L|XllL|mXllL	amyloid beta (A4) precursor protein-binding, family A, member 2	protein-coding	0.000000	0.358209	
mm_75022.1	chr8	31168623	31168823	-	1	NA	NA	NA	1	NM_026453	67920	Mm.289818	NM_026453	ENSMUSG00000031578	Mak16	2600016B03Rik|AI314911|Rbm13	MAK16 homolog	protein-coding	0.100000	0.631841	
mm_62018.1	chr7	91509047	91509247	+	1	NA	NA	NA	418361	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.363184	1(GGGCTTTAAAGC,-,0.00)
mm_134863.1	chr16	28446925	28447125	-	1	NA	NA	NA	-950	NM_001276420	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.030000	0.582090	-13(CTCCTTAAGAGC,-,0.00),-12(TCCTTAAGAGCC,+,0.00)
mm_21512.1	chr2	163625402	163625602	-	1	NA	NA	NA	18290	NM_001305803	76080	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.005000	0.527363	
mm_65933.1	chr7	30322942	30323142	-	1	NA	NA	NA	-667	NM_001033140	68332	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	0.020000	0.447761	-35(CCATATAAAAAC,-,0.00)
mm_42634.1	chr5	118486872	118487072	+	1	NA	NA	NA	-73747	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.005000	0.452736	25(CTCTCTTTAAGG,-,0.00)
mm_56689.1	chr6	114041878	114042078	-	1	NA	NA	NA	102	NM_009723	11941	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.195000	0.870647	
mm_139361.1	chr17	50530823	50531023	+	1	NA	NA	NA	21376	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.010000	0.402985	
mm_124358.1	chr14	105138900	105139100	-	1	NA	NA	NA	-24324	NR_040628	100502987	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0.000000	0.323383	
mm_82676.1	chr9	22131780	22131980	-	1	NA	NA	NA	-15	NM_001102404	11433	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.085000	0.681592	
mm_136788.1	chr17	10840330	10840530	+	1	NA	NA	NA	71	NM_016694	50873	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.105000	0.696517	
mm_169668.1	chr15	62032228	62032428	+	1	NA	NA	NA	-5658	NR_132747	19296	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	plasmacytoma variant translocation 1	ncRNA	0.005000	0.497512	
mm_36604.1	chr4	88938357	88938557	-	1	NA	NA	NA	3585	NR_132734	106557447	Mm.484668	NR_132734		LOC106557447	-	uncharacterized LOC106557447	ncRNA	0.185000	0.815920	
mm_125807.1	chr15	74926070	74926270	+	1	NA	NA	NA	-28881	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.015000	0.388060	
mm_30400.1	chr3	152252841	152253041	-	1	NA	NA	NA	13379	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.010000	0.348259	
mm_82490.1	chr9	18473475	18473675	-	1	NA	NA	NA	-16	NM_028935	72230	Mm.289689	NM_028935	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	0.080000	0.631841	
mm_68766.1	chr7	121946203	121946403	-	1	NA	NA	NA	35390	NM_001033318	233824	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0.005000	0.547264	
mm_123046.1	chr14	55590998	55591198	-	1	NA	NA	NA	3	NM_001029855	19188	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	0.050000	0.601990	
mm_27350.1	chr3	50415624	50415824	-	1	NA	NA	NA	27889	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.412935	
mm_56545.1	chr6	99726323	99726523	-	1	NA	NA	NA	-31	NM_001170419	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.165000	0.761194	-18(GCCTTTATAACC,+,0.00)
mm_117717.1	chr13	95375213	95375413	-	1	NA	NA	NA	44	NM_025630	66549	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	0.125000	0.671642	
mm_105311.1	chr11	102846073	102846273	-	1	NA	NA	NA	9877	NM_080846	75689	Mm.44408	NM_080846	ENSMUSG00000020928	Higd1b	2310056K19Rik	HIG1 domain family, member 1B	protein-coding	0.020000	0.522388	
mm_150784.1	chr19	44296543	44296743	+	1	NA	NA	NA	2967	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.010000	0.502488	
mm_158434.1	chrX	139998443	139998643	-	1	NA	NA	NA	52	NM_153586	237073	Mm.256670	NM_153586	ENSMUSG00000031433	Rbm41	BB131279|D330023I21Rik	RNA binding motif protein 41	protein-coding	0.020000	0.452736	
mm_95798.1	chr11	55103616	55103816	+	1	NA	NA	NA	5731	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.030000	0.572139	
mm_55101.1	chr6	49867670	49867870	-	1	NA	NA	NA	45060	NM_023456	109648	Mm.154796	NM_023456	ENSMUSG00000029819	Npy	0710005A05Rik	neuropeptide Y	protein-coding	0.025000	0.507463	
mm_158931.1	chr1	65926414	65926614	+	1	NA	NA	NA	-8	NM_027010	12969	Mm.275362	NM_027010	ENSMUSG00000025945	Crygf	3110001K11Rik|Cryg-2|DGcry-2|Len-2	crystallin, gamma F	protein-coding	0.005000	0.592040	
mm_80989.1	chr9	103305106	103305306	+	1	NA	NA	NA	-121	NM_176979	235559	Mm.259893	NM_176979	ENSMUSG00000032555	Topbp1	1110031N14Rik|2810429C13Rik|AI256758|D430026L04Rik|mKIAA0259	topoisomerase (DNA) II binding protein 1	protein-coding	0.135000	0.731343	
mm_152034.1	chr19	6117752	6117952	-	1	NA	NA	NA	734	NM_133678	66406	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.090000	0.656716	22(GCTTTTCAGGGC,+,0.00)
mm_127864.1	chr15	8359165	8359365	-	1	NA	NA	NA	85198	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.005000	0.353234	
mm_33013.1	chr4	120854757	120854957	+	1	NA	NA	NA	-23012	NM_182929	242662	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	0.095000	0.731343	
mm_141173.1	chr17	26572150	26572350	-	1	NA	NA	NA	10738	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.020000	0.482587	
mm_55978.1	chr6	85869015	85869215	-	1	NA	NA	NA	22	NM_053096	93673	Mm.24251	NM_053096	ENSMUSG00000033634	Nat8f2	Cml2	N-acetyltransferase 8 (GCN5-related) family member 2	protein-coding	0.010000	0.477612	
mm_13913.1	chr2	120502226	120502426	+	1	NA	NA	NA	25417	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.005000	0.497512	-98(TCGTCTAAAAGG,-,0.00)
mm_82808.1	chr9	29963027	29963227	-	1	NA	NA	NA	2	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.030000	0.487562	
mm_17147.1	chr2	25196649	25196849	-	1	NA	NA	NA	64	NM_146115	227612	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0.015000	0.587065	
mm_8419.1	chr1	152287941	152288141	-	1	NA	NA	NA	98641	NM_025677	66637	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	0.010000	0.462687	
mm_149675.1	chr19	20405156	20405356	+	1	NA	NA	NA	-32	NR_045817	68994	Mm.261028	NM_183277	ENSMUSG00000094732	1500015L24Rik	-	RIKEN cDNA 1500015L24 gene	ncRNA	0.005000	0.462687	67(TTCTCTAAAAGG,-,0.00)
mm_59720.1	chr7	28781471	28781671	+	1	NA	NA	NA	-57	NR_040339	100503790	Mm.446894	NR_040339		Gm19897	-	predicted gene, 19897	ncRNA	0.020000	0.542289	
mm_58965.1	chr7	18962462	18962662	+	1	NA	NA	NA	-24962	NM_194064	378430	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos homolog 2 (Drosophila)	protein-coding	0.035000	0.472637	-77(GTCTTTAAAATG,-,0.00)
mm_13866.1	chr2	119799457	119799657	+	1	NA	NA	NA	43	NM_019392	22174	Mm.2901	NM_019392	ENSMUSG00000027298	Tyro3	AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1	TYRO3 protein tyrosine kinase 3	protein-coding	0.150000	0.796020	
mm_71881.1	chr8	69812245	69812445	+	1	NA	NA	NA	3658	NM_198101	78816	Mm.324305	NM_198101	ENSMUSG00000036246	Gmip	5031419I10Rik	Gem-interacting protein	protein-coding	0.015000	0.462687	
mm_51299.1	chr6	72309663	72309863	+	1	NA	NA	NA	5153	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.020000	0.606965	
mm_15976.1	chr2	166447460	166447660	+	1	NA	NA	NA	109	NR_015558	319684	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.005000	0.557214	
mm_139386.1	chr17	52163036	52163236	+	1	NA	NA	NA	280409	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.015000	0.412935	-33(GTTTTTAAAGAA,+,0.00)
mm_3155.1	chr1	135155198	135155398	+	1	NA	NA	NA	8464	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.015000	0.572139	
mm_93666.1	chr10	117701521	117701721	-	1	NA	NA	NA	9137	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.010000	0.333333	
mm_70192.1	chr7	143822725	143822925	-	1	NA	NA	NA	27	NM_001308095	78914	Mm.35104	NM_030221	ENSMUSG00000031090	Nadsyn1	9130012B15Rik	NAD synthetase 1	protein-coding	0.075000	0.631841	
mm_94721.1	chr11	20631954	20632154	+	1	NA	NA	NA	77	NM_001038625	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.115000	0.701493	
mm_67423.1	chr7	80340081	80340281	-	1	NA	NA	NA	38	NM_133952	101869	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	0.070000	0.621891	
mm_123112.1	chr14	55885883	55886083	-	1	NA	NA	NA	1041	NR_138134	219094	Mm.37592	NM_027143	ENSMUSG00000047153	Khnyn	6330555F21|9130227C08Rik|AI605259|Kiaa0323|mKIAA0323	KH and NYN domain containing	protein-coding	0.040000	0.567164	-54(CGTCCTAAAAGG,-,0.00),-33(AGCCCTAAAAGG,-,0.00)
mm_84475.1	chr9	66804234	66804434	-	1	NA	NA	NA	-8911	NM_177583	208117	Mm.41291	NM_177583	ENSMUSG00000032375	Aph1b	2310057K14Rik|Aph1c	aph1 homolog B, gamma secretase subunit	protein-coding	0.005000	0.477612	-77(CCTTTTATAGTG,+,0.00)
mm_41835.1	chr5	104309217	104309417	+	1	NA	NA	NA	10030	NM_008318	15891	Mm.4987	NM_008318	ENSMUSG00000029306	Ibsp	BSP|BSP II|BSPII|Bsp2	integrin binding sialoprotein	protein-coding	0.020000	0.477612	
mm_64093.1	chr7	140968172	140968372	+	1	NA	NA	NA	196	NM_001112715	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding	0.025000	0.542289	
mm_38396.1	chr4	138836380	138836580	-	1	NA	NA	NA	4604	NM_001082531	18780	Mm.4675	NM_011108	ENSMUSG00000058908	Pla2g2a	EF|Mom1|Pla2|sPLA2|sPla2-IIA	phospholipase A2, group IIA (platelets, synovial fluid)	protein-coding	0.020000	0.537313	
mm_96964.1	chr11	70647461	70647661	+	1	NA	NA	NA	274	NM_027445	70510	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0.030000	0.472637	
mm_82330.1	chr9	9227405	9227605	-	1	NA	NA	NA	-8783	NR_045754	100579151	Mm.412450	NR_045754	ENSMUSG00000085253	Gm16833	-	predicted gene, 16833	ncRNA	0.000000	0.328358	
mm_166013.1	chr4	119232787	119232987	+	1	NA	NA	NA	-28	NM_001286148	56401	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	0.055000	0.597015	
mm_46391.1	chr5	104021858	104022058	-	1	NA	NA	NA	-162	NM_053262	114664	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0.060000	0.582090	
mm_142017.1	chr17	35200469	35200669	-	1	NA	NA	NA	1438	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.025000	0.592040	
mm_81572.1	chr9	110421600	110421800	+	1	NA	NA	NA	1892	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.015000	0.527363	
mm_152040.1	chr19	6127734	6127934	-	1	NA	NA	NA	381	NM_026912	69024	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	0.040000	0.502488	-98(CCCTTTAAGAGG,-,0.00),-97(CCTTTAAGAGGC,+,0.00),-31(TTTTTTAAAGTC,+,0.00)
mm_75745.1	chr8	69887291	69887491	-	1	NA	NA	NA	1	NM_026818	68709	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	0.070000	0.636816	-35(CCTTTTAGGTCC,+,0.00)
mm_126766.1	chr15	85879239	85879439	+	1	NA	NA	NA	12	NM_028063	72026	Mm.158211	NM_028063	ENSMUSG00000022386	Trmu	1110005N20Rik|1600025P05Rik|AI314320|Trmt1	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	protein-coding	0.120000	0.716418	
mm_117446.1	chr13	74770508	74770708	-	1	NA	NA	NA	128	NM_001301156	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.055000	0.572139	
mm_106088.1	chr11	116189446	116189646	-	1	NA	NA	NA	-9309	NM_027107	69535	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	0.020000	0.472637	
mm_2977.1	chr1	133108298	133108498	+	1	NA	NA	NA	-22768	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.005000	0.407960	
mm_163296.1	chr11	120014294	120014494	-	1	NA	NA	NA	-373	NR_037225	100526518		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0.015000	0.557214	
mm_159317.1	chr3	13471455	13471655	+	1	NA	NA	NA	-100	NM_178631	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.135000	0.736318	
mm_172800.1	chr9	115432334	115432534	-	1	NA	NA	NA	50615	NR_130329	100316675		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	0.030000	0.537313	-38(CCCCTTATAAGC,-,0.00),-36(CCTTATAAGCAC,+,0.00)
mm_87003.1	chr10	26799659	26799859	+	1	NA	NA	NA	27247	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.010000	0.492537	
mm_128673.1	chr15	60187277	60187477	-	1	NA	NA	NA	-170759	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.005000	0.393035	-64(TTCTTTAAAAGA,-,0.00),-63(TCTTTAAAAGAC,+,0.00)
mm_33445.1	chr4	130663118	130663318	+	1	NA	NA	NA	-141	NM_030722	80912	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0.135000	0.771144	
mm_76379.1	chr8	84838511	84838711	-	1	NA	NA	NA	2054	NM_001297607	19358	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.015000	0.606965	
mm_145370.1	chr18	56733119	56733319	+	1	NA	NA	NA	25406	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.020000	0.512438	
mm_98730.1	chr11	96351962	96352162	+	1	NA	NA	NA	430	NM_134032	103889	Mm.281153	NM_134032	ENSMUSG00000075588	Hoxb2	AI894218|Hox-2.8|Hoxbes2	homeobox B2	protein-coding	0.055000	0.646766	
mm_23374.1	chr3	55527781	55527981	+	1	NA	NA	NA	66123	NM_001195540	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.000000	0.432836	
mm_167915.1	chrX	99458956	99459156	+	1	NA	NA	NA	11679	NM_001083110	18744	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger 1, E3 ubiquitin protein ligase	protein-coding	0.010000	0.606965	
mm_105270.1	chr11	102406516	102406716	-	1	NA	NA	NA	901	NM_026542	68066	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.005000	0.587065	
mm_154676.1	chrX	7899256	7899456	+	1	NA	NA	NA	20	NR_132589	21855	Mm.27393	NM_011591	ENSMUSG00000031158	Timm17b	17kDa|Sfc3|mTim17b	translocase of inner mitochondrial membrane 17b	protein-coding	0.095000	0.636816	
mm_52065.1	chr6	97509576	97509776	+	1	NA	NA	NA	-21856	NM_001346637	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.010000	0.487562	
mm_23456.1	chr3	60472501	60472701	+	1	NA	NA	NA	-229	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.000000	0.388060	
mm_65988.1	chr7	30526361	30526561	-	1	NA	NA	NA	8599	NM_001289670	233071	Mm.190704	NM_178252	ENSMUSG00000036882	Arhgap33	AW324378|NOMA-GAP|Snx26|TCGAP	Rho GTPase activating protein 33	protein-coding	0.040000	0.582090	
mm_81641.1	chr9	110895676	110895876	+	1	NA	NA	NA	15454	NM_001146060	235633	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0.015000	0.587065	
mm_122042.1	chr14	30009221	30009421	-	1	NA	NA	NA	321	NM_001136240	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.015000	0.512438	
mm_49173.1	chr6	14901313	14901513	+	1	NA	NA	NA	64	NM_053242	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.100000	0.611940	
mm_92294.1	chr10	72654617	72654817	-	1	NA	NA	NA	-129	NM_025635	52696	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	0.060000	0.547264	
mm_25265.1	chr3	104788936	104789136	+	1	NA	NA	NA	2	NM_007484	11853	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0.085000	0.746269	
mm_169305.1	chr14	104121880	104122080	+	1	NA	NA	NA	-94838	NR_045953	73877	Mm.399172	NR_045953		4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.070000	0.666667	
mm_56800.1	chr6	116656652	116656852	-	1	NA	NA	NA	6068	NM_001166580	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.000000	0.427861	
mm_107290.1	chr12	29937951	29938151	+	1	NA	NA	NA	15	NM_181395	69675	Mm.251774	NM_181395	ENSMUSG00000020674	Pxdn	2310075M15Rik|C85409|E330004E07|VPO1|mKIAA0230	peroxidasin	protein-coding	0.120000	0.756219	
mm_165714.1	chr3	99296450	99296650	+	1	NA	NA	NA	42790	NM_009323	21384	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0.005000	0.477612	
mm_60025.1	chr7	30956845	30957045	+	1	NA	NA	NA	-142	NM_011680	22282	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0.130000	0.766169	
mm_2223.1	chr1	90519708	90519908	+	1	NA	NA	NA	-83617	NM_133805	108679	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	0.000000	0.631841	
mm_78054.1	chr9	14810568	14810768	+	1	NA	NA	NA	26014	NM_018736	17535	Mm.149071	NM_018736	ENSMUSG00000031928	Mre11a	Mre11|Mre11b	MRE11A homolog A, double strand break repair nuclease	protein-coding	0.000000	0.398010	
mm_119234.1	chr14	33337311	33337511	+	1	NA	NA	NA	73613	NM_001310452	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.020000	0.547264	
mm_13205.1	chr2	93600004	93600204	+	1	NA	NA	NA	-42330	NM_007442	11695	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.015000	0.497512	
mm_117643.1	chr13	92530736	92530936	-	1	NA	NA	NA	-26	NM_173392	218441	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	0.125000	0.701493	
mm_5146.1	chr1	9748242	9748442	-	1	NA	NA	NA	40	NM_173443	70675	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	0.065000	0.592040	
mm_375.1	chr1	34011139	34011339	+	1	NA	NA	NA	-586	NM_133833	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.035000	0.676617	
mm_64622.1	chr7	3666829	3667029	-	1	NA	NA	NA	-1089	NM_027203	69757	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	0.025000	0.527363	
mm_54202.1	chr6	24953547	24953747	-	1	NA	NA	NA	2478	NM_177013	319832	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0.000000	0.363184	84(ATGTCTAAAAGC,-,0.00)
mm_48443.1	chr5	140648844	140649044	-	1	NA	NA	NA	87	NM_001308040	78339	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.155000	0.805970	
mm_124192.1	chr14	98104813	98105013	-	1	NA	NA	NA	64852	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.005000	0.333333	
mm_73945.1	chr8	120114031	120114231	+	1	NA	NA	NA	-21	NM_001163762	234797	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.125000	0.726368	
mm_56211.1	chr6	89317879	89318079	-	1	NA	NA	NA	-32254	NR_131021	75131	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	-	RIKEN cDNA 4930512J16 gene	ncRNA	0.010000	0.363184	76(GGATTTTAAGGG,-,0.00)
mm_78619.1	chr9	37555580	37555780	+	1	NA	NA	NA	-2935	NM_022029	64011	Mm.335065	NM_022029	ENSMUSG00000053310	Nrgn	0710001B06Rik|AI838505|NG|NG/RC3|Pss1|R75334|RC3	neurogranin	protein-coding	0.005000	0.472637	
mm_131089.1	chr16	4886103	4886303	+	1	NA	NA	NA	103	NM_001252437	17237	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.115000	0.766169	
mm_67209.1	chr7	74346868	74347068	-	1	NA	NA	NA	207812	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.025000	0.572139	
mm_15179.1	chr2	154190679	154190879	+	1	NA	NA	NA	-39	NM_001012392	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.020000	0.572139	
mm_14373.1	chr2	129630092	129630292	+	1	NA	NA	NA	37023	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.010000	0.582090	
mm_131288.1	chr16	11322794	11322994	+	1	NA	NA	NA	-10	NM_028964	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.135000	0.746269	
mm_158444.1	chrX	140542500	140542700	-	1	NA	NA	NA	68	NR_122039	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.075000	0.636816	
mm_135478.1	chr16	45986360	45986560	-	1	NA	NA	NA	23953	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.005000	0.358209	
mm_93248.1	chr10	95417160	95417360	-	1	NA	NA	NA	-115	NR_045339	70523	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	0.060000	0.656716	
mm_25174.1	chr3	103127434	103127634	+	1	NA	NA	NA	-22	NM_177857	329727	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	0.010000	0.447761	
mm_119795.1	chr14	54195972	54196172	+	1	NA	NA	NA	57857	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.417910	
mm_7552.1	chr1	124600821	124601021	-	1	NA	NA	NA	-555362	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.373134	
mm_141622.1	chr17	32891508	32891708	-	1	NA	NA	NA	-5	NM_207245	240066	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0.020000	0.482587	
mm_57582.1	chr6	127150936	127151136	-	1	NA	NA	NA	12	NM_009829	12444	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.055000	0.646766	
mm_8934.1	chr1	164307113	164307313	-	1	NA	NA	NA	271	NM_001160209	66352	Mm.33285	NM_025505	ENSMUSG00000026577	Blzf1	1700030G05Rik|Blzf1l|Golgin-45|Jem-1	basic leucine zipper nuclear factor 1	protein-coding	0.070000	0.587065	
mm_21779.1	chr2	164847799	164847999	-	1	NA	NA	NA	9809	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.000000	0.467662	
mm_84195.1	chr9	60545757	60545957	-	1	NA	NA	NA	25	NR_040464	100504561	Mm.410770	NR_040463	ENSMUSG00000111761	9230112J17Rik	-	RIKEN cDNA 9230112J17 gene	ncRNA	0.020000	0.532338	
mm_76232.1	chr8	83574571	83574771	-	1	NA	NA	NA	7913	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.025000	0.626866	
mm_168997.1	chr13	100350089	100350289	+	1	NA	NA	NA	-32501	NM_021545	53880	Mm.218759	NM_021545		Naip7	Birc1g|Naip-rs4B|Naip6	NLR family, apoptosis inhibitory protein 7	protein-coding	0.020000	0.492537	
mm_127802.1	chr15	3995634	3995834	-	1	NA	NA	NA	18	NM_145930	106064	Mm.21299	NM_145930	ENSMUSG00000041935	AW549877	AI195826	expressed sequence AW549877	protein-coding	0.095000	0.721393	
mm_55500.1	chr6	69764576	69764776	-	1	NA	NA	NA	-437502	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.457711	
mm_50570.1	chr6	49050956	49051156	+	1	NA	NA	NA	14538	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.015000	0.537313	
mm_90985.1	chr10	13832593	13832793	-	1	NA	NA	NA	36264	NM_025446	66253	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	0.020000	0.462687	
mm_67837.1	chr7	98379169	98379369	-	1	NA	NA	NA	-17941	NM_001168539	244152	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.010000	0.492537	
mm_140514.1	chr17	5816600	5816800	-	1	NA	NA	NA	17210	NR_045080	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.020000	0.512438	
mm_167631.1	chr9	62342249	62342449	+	1	NA	NA	NA	1006	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.030000	0.542289	
mm_170992.1	chr2	75191587	75191787	-	1	NA	NA	NA	252492	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA	0.050000	0.547264	
mm_121418.1	chr14	119749132	119749332	+	1	NA	NA	NA	5	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA	0.015000	0.477612	
mm_143468.1	chr17	71002729	71002929	-	1	NA	NA	NA	-296	NM_026064	67268	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0.055000	0.512438	
mm_109476.1	chr12	111421453	111421653	+	1	NA	NA	NA	4108	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.020000	0.601990	
mm_9129.1	chr1	170644286	170644486	-	1	NA	NA	NA	-146	NM_177068	320078	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.085000	0.661692	
mm_113079.1	chr13	23836804	23837004	+	1	NA	NA	NA	-2530	NM_001164743	105355	Mm.27038	NM_134069	ENSMUSG00000036083	Slc17a3	AW261723|Npt4	solute carrier family 17 (sodium phosphate), member 3	protein-coding	0.015000	0.472637	
mm_145151.1	chr18	46337199	46337399	+	1	NA	NA	NA	-25371	NM_001160399	240261	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.005000	0.363184	80(CCTTTTAAAAAA,+,0.00)
mm_40540.1	chr5	57987930	57988130	+	1	NA	NA	NA	269949	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.000000	0.323383	-72(ATCTTTTAAAAG,-,0.00),-71(TCTTTTAAAAGC,+,0.00),-71(TCTTTTAAAAGC,-,0.00),-70(CTTTTAAAAGCT,+,0.00),2(CCTTCTAAAAGC,-,0.00)
mm_152167.1	chr19	7297522	7297722	-	1	NA	NA	NA	-2175	NM_001080390	13728	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.005000	0.432836	
mm_157475.1	chrX	48139545	48139745	-	1	NA	NA	NA	-6791	NM_001313749	74131	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	0.020000	0.457711	-32(CTTTATAAAAAG,-,0.00)
mm_44589.1	chr5	24925313	24925513	-	1	NA	NA	NA	-16904	NM_001170555	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.015000	0.487562	
mm_82691.1	chr9	22376107	22376307	-	1	NA	NA	NA	3016	NR_030448	751551		NR_030448	ENSMUSG00000076117	Mir680-2	Mirn680-2	microRNA 680-2	ncRNA	0.010000	0.492537	
mm_3606.1	chr1	151677904	151678104	+	1	NA	NA	NA	-77370	NM_001311165	66967	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0.000000	0.373134	33(GCATTAAGAGAC,+,0.00)
mm_150635.1	chr19	41483023	41483223	+	1	NA	NA	NA	-42129	NM_001326287	627352	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0.165000	0.810945	
mm_18087.1	chr2	44927201	44927401	-	1	NA	NA	NA	-65679	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.145000	0.810945	
mm_97055.1	chr11	72607219	72607419	+	1	NA	NA	NA	58	NM_025985	67128	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	0.135000	0.751244	
mm_126701.1	chr15	85132001	85132201	+	1	NA	NA	NA	2	NM_026357	67747	Mm.158173	NM_026357	ENSMUSG00000022431	Ribc2	4930579A10Rik|Trib	RIB43A domain with coiled-coils 2	protein-coding	0.100000	0.597015	
mm_127108.1	chr15	97869277	97869477	+	1	NA	NA	NA	-24875	NM_001204278	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.020000	0.527363	84(CCCTATTTGAGG,-,0.00)
mm_31738.1	chr4	63204053	63204253	+	1	NA	NA	NA	-11259	NM_025685	373864	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0.020000	0.572139	
mm_164687.1	chr17	47611149	47611349	-	1	NA	NA	NA	243	NM_016859	53414	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	0.060000	0.537313	
mm_145844.1	chr18	65448109	65448309	+	1	NA	NA	NA	17212	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.402985	
mm_59247.1	chr7	24784528	24784728	+	1	NA	NA	NA	7424	NM_007675	26366	Mm.30300	NM_007675	ENSMUSG00000054169	Ceacam10	Bgp3|Cea10	carcinoembryonic antigen-related cell adhesion molecule 10	protein-coding	0.025000	0.477612	
mm_46106.1	chr5	92348031	92348231	-	1	NA	NA	NA	758	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.050000	0.547264	
mm_5488.1	chr1	36892617	36892817	-	1	NA	NA	NA	46810	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.010000	0.467662	-84(GCCTTTATAGCA,+,0.00)
mm_33406.1	chr4	129847758	129847958	+	1	NA	NA	NA	27150	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.020000	0.457711	
mm_57598.1	chr6	127794625	127794825	-	1	NA	NA	NA	-6582	NR_106092	102466996		NR_106092	ENSMUSG00000104804	Mir7233	mmu-mir-7233	microRNA 7233	ncRNA	0.000000	0.368159	
mm_27678.1	chr3	65929329	65929529	-	1	NA	NA	NA	28796	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.015000	0.597015	
mm_165201.1	chr2	32715296	32715496	+	1	NA	NA	NA	-2424	NR_039536	100628606		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0.005000	0.522388	
mm_130787.1	chr15	101628150	101628350	-	1	NA	NA	NA	-62	NM_001003670	406223	Mm.475602	NM_001003670	ENSMUSG00000064232	Gm5414	EG406223|Kb14	predicted gene 5414	protein-coding	0.005000	0.492537	-32(CATTATAAAAGC,-,0.00)
mm_165146.1	chr2	18893624	18893824	+	1	NA	NA	NA	-91906	NR_131254	66774	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.005000	0.467662	
mm_66643.1	chr7	45655532	45655732	-	1	NA	NA	NA	10762	NM_018876	14344	Mm.290046	NM_018876	ENSMUSG00000055978	Fut2	-	fucosyltransferase 2	protein-coding	0.020000	0.447761	
mm_86856.1	chr10	21882127	21882327	+	1	NA	NA	NA	43	NM_001161845	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.055000	0.626866	
mm_100843.1	chr11	5741062	5741262	-	1	NA	NA	NA	14	NM_178623	72046	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	0.140000	0.805970	
mm_79856.1	chr9	64960807	64961007	+	1	NA	NA	NA	-23	NM_175153	69882	Mm.272616	NM_175153	ENSMUSG00000034263	Vwa9	2010321M09Rik	von Willebrand factor A domain containing 9	protein-coding	0.080000	0.626866	
mm_69862.1	chr7	141437701	141437901	-	1	NA	NA	NA	73	NM_026646	68267	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0.030000	0.577114	
mm_144138.1	chr18	4993746	4993946	+	1	NA	NA	NA	-52743	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.005000	0.502488	
mm_86843.1	chr10	21419375	21419575	+	1	NA	NA	NA	42175	NM_178713	237320	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0.040000	0.507463	
mm_135513.1	chr16	48771920	48772120	-	1	NA	NA	NA	-64	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.010000	0.398010	13(CGGCATTTAAGG,-,0.00)
mm_123180.1	chr14	57665126	57665326	-	1	NA	NA	NA	-270	NM_020506	57258	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	0.140000	0.761194	
mm_60745.1	chr7	45457985	45458185	+	1	NA	NA	NA	1801	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.040000	0.626866	
mm_94879.1	chr11	24255607	24255807	+	1	NA	NA	NA	175012	NM_001159290	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.035000	0.467662	-78(CCATTTATAATC,+,0.00)
mm_24695.1	chr3	95110950	95111150	+	1	NA	NA	NA	8	NM_009336	21427	Mm.133919	NM_009336	ENSMUSG00000008958	Vps72	Tcfl1|YL-1	vacuolar protein sorting 72	protein-coding	0.100000	0.641791	
mm_112583.1	chr13	13712626	13712826	+	1	NA	NA	NA	-71333	NM_001302997	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0.010000	0.407960	-26(TCTCTTAGAGCC,+,0.00)
mm_133442.1	chr16	87728978	87729178	+	1	NA	NA	NA	30124	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.010000	0.373134	
mm_109376.1	chr12	109673267	109673467	+	1	NA	NA	NA	-8830	NR_030540	100124461		NR_030540	ENSMUSG00000077881	Mir882	Mirn882|mmu-mir-882	microRNA 882	ncRNA	0.005000	0.333333	9(GCTTTTAGAAAC,+,0.00)
mm_117305.1	chr13	67375643	67375843	-	1	NA	NA	NA	20	NM_001001186	408065	Mm.461583	NM_001001186	ENSMUSG00000078995	Zfp456	BC065418|Rslcan-13	zinc finger protein 456	protein-coding	0.025000	0.507463	
mm_133171.1	chr16	72027508	72027708	+	1	NA	NA	NA	206719	NR_131116	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0.035000	0.462687	
mm_29369.1	chr3	108711324	108711524	-	1	NA	NA	NA	10875	NM_029522	76123	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0.010000	0.432836	
mm_117121.1	chr13	60897306	60897506	-	1	NA	NA	NA	41	NM_007797	13025	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	0.005000	0.537313	
mm_93731.1	chr10	119850584	119850784	-	1	NA	NA	NA	1706	NR_131760	78105	Mm.399086	NR_131760	ENSMUSG00000085418	Grip1os1	4930404E01Rik|4930483C13Rik	glutamate receptor interacting protein 1, opposite strand 1	ncRNA	0.000000	0.353234	10(TCCTTAATAGAG,+,0.00)
mm_118449.1	chr14	8299477	8299677	+	1	NA	NA	NA	10199	NM_183187	268709	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0.040000	0.601990	
mm_133012.1	chr16	56127284	56127484	+	1	NA	NA	NA	51904	NM_001304503	66315	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0.010000	0.422886	
mm_118642.1	chr14	21499757	21499957	+	1	NA	NA	NA	72	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.105000	0.746269	
mm_80399.1	chr9	77313623	77313823	+	1	NA	NA	NA	34147	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.025000	0.412935	
mm_149101.1	chr19	8942145	8942345	+	1	NA	NA	NA	325	NM_011842	23942	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	0.135000	0.711443	
mm_102332.1	chr11	57829141	57829341	-	1	NA	NA	NA	2906	NM_008213	15110	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed transcript 1	protein-coding	0.045000	0.537313	
mm_144379.1	chr18	20665312	20665512	+	1	NA	NA	NA	162	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.025000	0.552239	-33(GGGTATAAAAGC,-,0.00)
mm_167702.1	chr9	90243043	90243243	-	1	NA	NA	NA	27626	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.015000	0.557214	
mm_150520.1	chr19	39036386	39036586	+	1	NA	NA	NA	-24520	NM_028191	72303	Mm.482578	NM_028191	ENSMUSG00000067231	Cyp2c65	2210009K14Rik	cytochrome P450, family 2, subfamily c, polypeptide 65	protein-coding	0.005000	0.422886	
mm_164055.1	chr14	103464295	103464495	+	1	NA	NA	NA	-48946	NM_022886	64929	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.000000	0.582090	
mm_27198.1	chr3	35662223	35662423	-	1	NA	NA	NA	3840	NR_040748	625963	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	0.015000	0.552239	
mm_162945.1	chr10	129664767	129664967	+	1	NA	NA	NA	-888	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.020000	0.522388	
mm_21258.1	chr2	156347943	156348143	-	1	NA	NA	NA	-35339	NM_020255	19018	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	0.030000	0.482587	
mm_42779.1	chr5	121397885	121398085	+	1	NA	NA	NA	3	NM_172722	231713	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	0.115000	0.666667	
mm_103824.1	chr11	83012150	83012350	-	1	NA	NA	NA	8472	NM_001167743	276950	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0.010000	0.388060	
mm_39078.1	chr4	154334662	154334862	-	1	NA	NA	NA	-34867	NM_001112744	230972	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.040000	0.582090	
mm_9471.1	chr1	173334430	173334630	-	1	NA	NA	NA	-1027	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	0.020000	0.467662	
mm_117821.1	chr13	98016093	98016293	-	1	NA	NA	NA	189972	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0.035000	0.552239	
mm_137207.1	chr17	24038126	24038326	+	1	NA	NA	NA	-17	NM_175440	213171	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	0.020000	0.567164	
mm_141181.1	chr17	26938710	26938910	-	1	NA	NA	NA	648	NR_104458	67675	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	0.055000	0.577114	
mm_45043.1	chr5	41701208	41701408	-	1	NA	NA	NA	6383	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.010000	0.422886	
mm_162855.1	chr10	89872833	89873033	+	1	NA	NA	NA	-576	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.140000	0.810945	
mm_87922.1	chr10	62507808	62508008	+	1	NA	NA	NA	-153	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.015000	0.417910	
mm_104721.1	chr11	98153465	98153665	-	1	NA	NA	NA	-3949	NM_028149	72194	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	0.010000	0.323383	11(CCTTTTCTGGTC,+,0.00)
mm_33390.1	chr4	129811136	129811336	+	1	NA	NA	NA	-9243	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.030000	0.497512	
mm_10253.1	chr2	9305230	9305430	+	1	NA	NA	NA	115815	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.005000	0.442786	
mm_148964.1	chr19	7494369	7494569	+	1	NA	NA	NA	31	NM_146091	109168	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0.125000	0.711443	
mm_90747.1	chr10	5424277	5424477	-	1	NA	NA	NA	63937	NM_001347711	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.010000	0.477612	
mm_12121.1	chr2	61617055	61617255	+	1	NA	NA	NA	24058	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.000000	0.388060	31(CTTTATATAGTG,+,0.00)
mm_18123.1	chr2	44997249	44997449	-	1	NA	NA	NA	25828	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.015000	0.442786	
mm_70592.1	chr8	13200682	13200882	+	1	NA	NA	NA	-158	NM_025768	66790	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	0.050000	0.587065	
mm_18270.1	chr2	52335147	52335347	-	1	NA	NA	NA	3551	NM_010889	17996	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	0.015000	0.512438	
mm_107442.1	chr12	36314332	36314532	+	1	NA	NA	NA	263	NM_025312	66042	Mm.43375	NM_025312	ENSMUSG00000036169	Sostdc1	0610006G05Rik|Sostl|USAG-1|Wise|ectodin	sclerostin domain containing 1	protein-coding	0.010000	0.437811	-73(GGCTTTTAAAAA,-,0.00)
mm_55591.1	chr6	71555667	71555867	-	1	NA	NA	NA	11913	NM_025783	66700	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	0.005000	0.492537	-34(GAGTATAAATAG,-,0.00)
mm_83037.1	chr9	37255637	37255837	-	1	NA	NA	NA	1	NM_020258	56857	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.030000	0.532338	
mm_11040.1	chr2	27009865	27010065	+	1	NA	NA	NA	39	NM_001243239	381356	Mm.150270	NM_029862	ENSMUSG00000015488	Cacfd1	5930434B04Rik|mFwe	calcium channel flower domain containing 1	protein-coding	0.120000	0.736318	
mm_146009.1	chr18	69345686	69345886	+	1	NA	NA	NA	65	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.015000	0.487562	
mm_19031.1	chr2	76969569	76969769	-	1	NA	NA	NA	12878	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.045000	0.572139	
mm_118345.1	chr13	114854023	114854223	-	1	NA	NA	NA	35886	NM_001113374	17434	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.015000	0.407960	
mm_155106.1	chrX	48368050	48368250	+	1	NA	NA	NA	26792	NM_178782	320376	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	0.040000	0.601990	
mm_57993.1	chr6	136172286	136172486	-	1	NA	NA	NA	1125	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.095000	0.671642	
mm_83592.1	chr9	48480424	48480624	-	1	NA	NA	NA	87	NM_024233	104444	Mm.21911	NM_024233	ENSMUSG00000032026	Rexo2	1810038D15Rik|AW107347|Rex2|Sfn|Smfn	RNA exonuclease 2	protein-coding	0.125000	0.731343	
mm_133407.1	chr16	84835291	84835491	+	1	NA	NA	NA	234	NM_016755	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.130000	0.741294	
mm_125966.1	chr15	76274127	76274327	+	1	NA	NA	NA	-4388	NR_045747	100038659	Mm.448549	NR_045747		Mirt2	ENSMUSG00000075583|Gm10872|Gm24562	myocardial infraction associated transcript 2	ncRNA	0.005000	0.497512	
mm_29583.1	chr3	117360096	117360296	-	1	NA	NA	NA	680	NM_177664	229791	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	0.125000	0.736318	
mm_58551.1	chr7	4740016	4740216	+	1	NA	NA	NA	-11	NM_146177	232811	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	0.095000	0.616915	
mm_47421.1	chr5	123141207	123141407	-	1	NA	NA	NA	-886	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.095000	0.597015	-100(CTTTATTAAAGG,-,0.00)
mm_132463.1	chr16	36252775	36252975	+	1	NA	NA	NA	-24273	NM_001082543	20861	Mm.327618	NM_001082543	ENSMUSG00000071562	Stfa1	Stefin-3|Stf-3|Stf1|Stf3|Stfa3	stefin A1	protein-coding	0.010000	0.427861	
mm_137366.1	chr17	25454440	25454640	+	1	NA	NA	NA	-17050	NM_027951	71840	Mm.282330	NM_027951	ENSMUSG00000024175	Tekt4	1700010L19Rik	tektin 4	protein-coding	0.005000	0.552239	
mm_87797.1	chr10	60299858	60300058	+	1	NA	NA	NA	15497	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.045000	0.606965	
mm_79357.1	chr9	54266015	54266215	+	1	NA	NA	NA	-20371	NM_177350	235379	Mm.123549	NM_177350	ENSMUSG00000046167	Gldn	CRG-L2|Clom|Colm|Crgl2|Crlg2	gliomedin	protein-coding	0.005000	0.497512	
mm_44275.1	chr5	5694470	5694670	-	1	NA	NA	NA	-2	NM_028734	74051	Mm.274956	NM_028734	ENSMUSG00000015653	Steap2	4921538B17Rik|AI930049|AW045895|IPCA-1|IPCA1|PCANAP1|STAMP1|STMP	six transmembrane epithelial antigen of prostate 2	protein-coding	0.045000	0.626866	
mm_732.1	chr1	43204753	43204953	+	1	NA	NA	NA	-8092	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.010000	0.442786	
mm_148109.1	chr18	74207719	74207919	-	1	NA	NA	NA	-1	NM_025581	66468	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	0.095000	0.636816	
mm_55715.1	chr6	73221515	73221715	-	1	NA	NA	NA	16	NM_001164669	330355	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0.030000	0.547264	
mm_76075.1	chr8	78820999	78821199	-	1	NA	NA	NA	53	NM_001191004	78651	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.115000	0.666667	
mm_129180.1	chr15	76287661	76287861	-	1	NA	NA	NA	-6673	NM_001195537	100503915	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	ENSMUSG00000071724|Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	0.020000	0.522388	
mm_18216.1	chr2	49730200	49730400	-	1	NA	NA	NA	-57386	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.025000	0.532338	
mm_118185.1	chr13	107414653	107414853	-	1	NA	NA	NA	-55069	NR_045083	105120	Mm.417700	NR_045083		AI197445	-	expressed sequence AI197445	ncRNA	0.025000	0.512438	
mm_89727.1	chr10	98920925	98921125	+	1	NA	NA	NA	5873	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.000000	0.313433	
mm_86287.1	chr9	121914591	121914791	-	1	NA	NA	NA	1614	NM_010012	13124	Mm.20889	NM_010012	ENSMUSG00000050445	Cyp8b1	-	cytochrome P450, family 8, subfamily b, polypeptide 1	protein-coding	0.020000	0.587065	
mm_43647.1	chr5	138263977	138264177	+	1	NA	NA	NA	-25	NM_153161	231807	Mm.164493	NM_153161	ENSMUSG00000036948	BC037034	-	cDNA sequence BC037034	protein-coding	0.055000	0.562189	
mm_155410.1	chrX	73420607	73420807	+	1	NA	NA	NA	9147	NM_001310531	22754	Mm.5060	NM_009566	ENSMUSG00000031374	Zfp92	-	zinc finger protein 92	protein-coding	0.020000	0.502488	
mm_117988.1	chr13	100233238	100233438	-	1	NA	NA	NA	13998	NM_010870	17951	Mm.290476	NM_010870	ENSMUSG00000071203	Naip5	Birc1e|Lgn1|Naip-rs3	NLR family, apoptosis inhibitory protein 5	protein-coding	0.000000	0.348259	
mm_87275.1	chr10	41887342	41887542	+	1	NA	NA	NA	3	NM_001013370	140742	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.165000	0.761194	
mm_37020.1	chr4	114470803	114471003	-	1	NA	NA	NA	64179	NM_001085549	666048	Mm.331779	NM_001085549	ENSMUSG00000070867	Trabd2b	Gm12824|Hkat|OTTMUSG00000008561	TraB domain containing 2B	protein-coding	0.010000	0.492537	
mm_54337.1	chr6	30645139	30645339	-	1	NA	NA	NA	6021	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.005000	0.532338	-95(GCCTAAATGGGG,+,0.00)
mm_95910.1	chr11	58206604	58206804	+	1	NA	NA	NA	7148	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.015000	0.517413	
mm_102555.1	chr11	61378006	61378206	-	1	NA	NA	NA	-31	NM_026183	67473	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	0.085000	0.706468	
mm_49633.1	chr6	30804857	30805057	+	1	NA	NA	NA	63658	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.587065	
mm_159741.1	chr5	71548192	71548392	-	1	NA	NA	NA	-87	NM_030052	78174	Mm.60690	NM_030052	ENSMUSG00000049387	Cox7b2	4930503B16Rik	cytochrome c oxidase subunit VIIb2	protein-coding	0.040000	0.517413	
mm_13602.1	chr2	112712731	112712931	+	1	NA	NA	NA	153149	NM_001165935	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.005000	0.427861	
mm_120759.1	chr14	73366307	73366507	+	1	NA	NA	NA	18864	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.040000	0.492537	
mm_134007.1	chr16	4829201	4829401	-	1	NA	NA	NA	-6115	NM_030192	78809	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	0.015000	0.422886	
mm_55128.1	chr6	50596495	50596695	-	1	NA	NA	NA	-5	NM_027564	70821	Mm.157323	NM_027564	ENSMUSG00000029828	4921507P07Rik	TISP74	RIKEN cDNA 4921507P07 gene	protein-coding	0.105000	0.721393	
mm_125200.1	chr15	32921014	32921214	+	1	NA	NA	NA	391	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0.060000	0.582090	
mm_6815.1	chr1	84179017	84179217	-	1	NA	NA	NA	39844	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.517413	47(GGCTTTATAGAC,-,0.00),49(CTTTATAGACAG,+,0.00)
mm_116168.1	chr13	30792156	30792356	-	1	NA	NA	NA	43023	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.010000	0.477612	
mm_73243.1	chr8	104250791	104250991	+	1	NA	NA	NA	30	NM_001286383	75458	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	0.075000	0.636816	
mm_108477.1	chr12	83659408	83659608	+	1	NA	NA	NA	27274	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.015000	0.422886	
mm_126299.1	chr15	79357765	79357965	+	1	NA	NA	NA	9463	NM_001304832	17133	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.065000	0.656716	
mm_135074.1	chr16	34262807	34263007	-	1	NA	NA	NA	251120	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.025000	0.567164	
mm_64118.1	chr7	141079670	141079870	+	1	NA	NA	NA	1	NM_019762	56460	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0.045000	0.676617	
mm_79978.1	chr9	66915570	66915770	+	1	NA	NA	NA	4035	NM_173413	235442	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.005000	0.467662	
mm_3527.1	chr1	150165121	150165321	+	1	NA	NA	NA	-273	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.015000	0.462687	
mm_69898.1	chr7	141637940	141638140	-	1	NA	NA	NA	17279	NM_001330001	353328	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0.005000	0.532338	
mm_29268.1	chr3	107458849	107459049	-	1	NA	NA	NA	-51	NM_145922	99738	Mm.101976	NM_145922	ENSMUSG00000027895	Kcnc4	AI850292|KSHIIIC|Kcr2-4|Kv3.4	potassium voltage gated channel, Shaw-related subfamily, member 4	protein-coding	0.070000	0.671642	
mm_12103.1	chr2	61578483	61578683	+	1	NA	NA	NA	-3	NM_011529	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.020000	0.487562	60(GTCTTTAAAGAG,+,0.00),60(GTCTTTAAAGAG,-,0.00),62(CTTTAAAGAGAC,+,0.00)
mm_109307.1	chr12	109560658	109560858	+	1	NA	NA	NA	-2934	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.010000	0.447761	
mm_132153.1	chr16	32142688	32142888	+	1	NA	NA	NA	22688	NM_146069	224109	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.010000	0.378109	
mm_24708.1	chr3	95164221	95164421	+	1	NA	NA	NA	-18	NM_011351	20360	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	0.020000	0.641791	
mm_165064.1	chr19	44057115	44057315	-	1	NA	NA	NA	12471	NM_145502	226144	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	0.015000	0.457711	
mm_82446.1	chr9	15306005	15306205	-	1	NA	NA	NA	62	NM_001199485	70984	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0.055000	0.616915	
mm_62971.1	chr7	119896305	119896505	+	1	NA	NA	NA	113	NM_029610	73919	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0.060000	0.611940	66(GATTATAAATGG,-,0.00)
mm_107676.1	chr12	54343609	54343809	+	1	NA	NA	NA	47609	NR_033689	665239	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.015000	0.447761	
mm_157109.1	chrX	9437935	9438135	-	1	NA	NA	NA	31289	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.398010	-80(CCCCCTAAAAGG,-,0.00)
mm_142884.1	chr17	51829521	51829721	-	1	NA	NA	NA	3026	NM_009122	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.000000	0.398010	26(AGGCCTAAAAGG,-,0.00)
mm_98553.1	chr11	95097147	95097347	+	1	NA	NA	NA	-20436	NM_001306162	16400	Mm.57035	NM_013565	ENSMUSG00000001507	Itga3	AA407068|CD49C|GAPB3	integrin alpha 3	protein-coding	0.005000	0.542289	
mm_113094.1	chr13	24105508	24105708	+	1	NA	NA	NA	-114394	NM_145399	214189	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.005000	0.492537	-71(AGATTTATAAGG,-,0.00)
mm_64948.1	chr7	16372107	16372307	-	1	NA	NA	NA	15689	NM_001285892	56459	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	0.005000	0.527363	
mm_45105.1	chr5	44799555	44799755	-	1	NA	NA	NA	91	NM_001347349	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0.035000	0.621891	
mm_52655.1	chr6	117861858	117862058	+	1	NA	NA	NA	-1119	NM_008616	22685	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0.015000	0.447761	
mm_113800.1	chr13	46420436	46420636	+	1	NA	NA	NA	2236	NM_001081425	666794	Mm.38269	NM_001081425	ENSMUSG00000038132	Rbm24	6330546B05Rik|AI606861	RNA binding motif protein 24	protein-coding	0.010000	0.517413	-31(GCCCAGAAAAGC,-,0.00)
mm_134713.1	chr16	22895119	22895319	-	1	NA	NA	NA	-833	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.040000	0.537313	
mm_168542.1	chr11	62458551	62458751	-	1	NA	NA	NA	191	NM_001039536	327942	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.060000	0.611940	
mm_105943.1	chr11	115267143	115267343	-	1	NA	NA	NA	0	NM_010350	14813	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0.140000	0.815920	
mm_146217.1	chr18	77038281	77038481	+	1	NA	NA	NA	8915	NM_027721	71206	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	0.015000	0.487562	
mm_168973.1	chr12	86846406	86846606	-	1	NA	NA	NA	38308	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.030000	0.472637	
mm_142194.1	chr17	36951518	36951718	-	1	NA	NA	NA	174	NM_029632	76497	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	0.040000	0.547264	
mm_147192.1	chr18	37644029	37644229	-	1	NA	NA	NA	75	NM_175770	24074	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TATA-box binding protein associated factor 7	protein-coding	0.110000	0.616915	
mm_89370.1	chr10	88731314	88731514	+	1	NA	NA	NA	0	NM_025859	104303	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0.130000	0.701493	
mm_51618.1	chr6	85187448	85187648	+	1	NA	NA	NA	-383	NM_010131	13796	Mm.391473	NM_010131	ENSMUSG00000033726	Emx1	-	empty spiracles homeobox 1	protein-coding	0.065000	0.671642	
mm_86999.1	chr10	26778405	26778605	+	1	NA	NA	NA	5993	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.010000	0.383085	
mm_121478.1	chr14	121035415	121035615	+	1	NA	NA	NA	-59	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.105000	0.781095	
mm_15918.1	chr2	165064917	165065117	+	1	NA	NA	NA	9381	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.000000	0.417910	
mm_163885.1	chr14	24446360	24446560	-	1	NA	NA	NA	40586	NM_001081247	218832	Mm.343610	NM_183157	ENSMUSG00000025280	Polr3a	9330175N20Rik|BC053071|RPC1|RPC155	polymerase (RNA) III (DNA directed) polypeptide A	protein-coding	0.010000	0.482587	-17(GCTCTTAGAGAC,+,0.00)
mm_63817.1	chr7	134006513	134006713	+	1	NA	NA	NA	218484	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.005000	0.477612	
mm_22160.1	chr2	172939975	172940175	-	1	NA	NA	NA	246	NM_007557	12162	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	0.145000	0.746269	
mm_24963.1	chr3	96699159	96699359	+	1	NA	NA	NA	2183	NM_018812	229615	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	0.015000	0.547264	
mm_153479.1	chr19	41275859	41276059	-	1	NA	NA	NA	-11955	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.005000	0.482587	
mm_138522.1	chr17	35238291	35238491	+	1	NA	NA	NA	1795	NM_023179	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.015000	0.462687	
mm_85623.1	chr9	107614940	107615140	-	1	NA	NA	NA	-5799	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.010000	0.606965	
mm_107906.1	chr12	70968242	70968442	+	1	NA	NA	NA	-6281	NM_001310595	19167	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0.060000	0.606965	
mm_130933.1	chr15	103196715	103196915	-	1	NA	NA	NA	18537	NM_007626	12419	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0.005000	0.407960	
mm_34214.1	chr4	140966413	140966613	+	1	NA	NA	NA	5242	NM_023374	67680	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.025000	0.487562	
mm_3814.1	chr1	158969723	158969923	+	1	NA	NA	NA	-12385	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding	0.025000	0.462687	
mm_110274.1	chr12	32017514	32017714	-	1	NA	NA	NA	43665	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.025000	0.507463	
mm_65645.1	chr7	28049954	28050154	-	1	NA	NA	NA	38	NM_011874	23996	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	0.060000	0.557214	-68(TACCTTAAAAAC,-,0.00),-66(CCTTAAAAACTA,+,0.00)
mm_136260.1	chr16	91011050	91011250	-	1	NA	NA	NA	-55	NM_001045515	104015	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.110000	0.736318	
mm_80765.1	chr9	95559439	95559639	+	1	NA	NA	NA	-278	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.145000	0.771144	
mm_64749.1	chr7	4789478	4789678	-	1	NA	NA	NA	-18	NM_029384	664968	Mm.292837	NM_029384	ENSMUSG00000030431	Tmem238	2210411K11Rik	transmembrane protein 238	protein-coding	0.120000	0.766169	
mm_113990.1	chr13	52582950	52583150	+	1	NA	NA	NA	-387	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.090000	0.666667	
mm_87924.1	chr10	62508088	62508288	+	1	NA	NA	NA	-433	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.045000	0.572139	
mm_21661.1	chr2	164425032	164425232	-	1	NA	NA	NA	18056	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.010000	0.348259	-76(CTATTTATAGCT,+,0.00)
mm_146240.1	chr18	77195915	77196115	+	1	NA	NA	NA	10168	NM_013666	225742	Mm.365178	NM_013666	ENSMUSG00000025425	St8sia5	ST8SiaV|Siat8e	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding	0.000000	0.383085	
mm_47080.1	chr5	117004621	117004821	-	1	NA	NA	NA	111272	NM_001122666	71954	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	0.015000	0.537313	
mm_8778.1	chr1	161156856	161157056	-	1	NA	NA	NA	2358	NM_001195189	100502590	Mm.449990	NM_001195189		4930469G21Rik	-	RIKEN cDNA 4930469G21 gene	protein-coding	0.025000	0.402985	-86(GAGTATAAAAGA,-,0.00)
mm_83010.1	chr9	36767517	36767717	-	1	NA	NA	NA	-39	NM_008408	16430	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	0.060000	0.592040	
mm_152967.1	chr19	29367290	29367490	-	1	NA	NA	NA	-48	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.055000	0.562189	
mm_124364.1	chr14	105643576	105643776	-	1	NA	NA	NA	-19906	NR_105814	102465207		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	0.010000	0.422886	
mm_168600.1	chr1	174254146	174254346	+	1	NA	NA	NA	-3270	NM_146715	258710	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding	0.075000	0.661692	
mm_72315.1	chr8	78066219	78066419	+	1	NA	NA	NA	-147023	NM_183096	73301	Mm.61243	NM_183096	ENSMUSG00000037101	Ttc29	1700031F13Rik	tetratricopeptide repeat domain 29	protein-coding	0.025000	0.557214	
mm_57994.1	chr6	136172309	136172509	-	1	NA	NA	NA	1102	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.110000	0.676617	
mm_42149.1	chr5	111420074	111420274	+	1	NA	NA	NA	2008	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.060000	0.691542	
mm_17187.1	chr2	25460931	25461131	-	1	NA	NA	NA	63	NM_153557	227622	Mm.261780	NM_153557	ENSMUSG00000047617	BC029214	D930050G13Rik|Paxx	cDNA sequence BC029214	protein-coding	0.070000	0.562189	
mm_3119.1	chr1	134646479	134646679	+	1	NA	NA	NA	-102	NM_009307	20980	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194	synaptotagmin II	protein-coding	0.140000	0.756219	
mm_93632.1	chr10	117280904	117281104	-	1	NA	NA	NA	1268	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.005000	0.447761	
mm_136045.1	chr16	78410082	78410282	-	1	NA	NA	NA	-33001	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.035000	0.522388	-61(GCTTTTCAAGAG,+,0.00)
mm_50963.1	chr6	59208970	59209170	+	1	NA	NA	NA	200	NM_001081145	68140	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.115000	0.711443	
mm_24168.1	chr3	88563103	88563303	+	1	NA	NA	NA	9487	NM_033526	94232	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	0.055000	0.666667	
mm_66642.1	chr7	45638663	45638863	-	1	NA	NA	NA	-1214	NM_172418	74490	Mm.107442	NM_172418	ENSMUSG00000042918	Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding	0.060000	0.592040	
mm_41691.1	chr5	100583325	100583525	+	1	NA	NA	NA	-11220	NM_139198	231507	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.010000	0.457711	
mm_55377.1	chr6	58780451	58780651	-	1	NA	NA	NA	-53149	NM_028705	73998	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0.005000	0.507463	
mm_91615.1	chr10	41606353	41606553	-	1	NA	NA	NA	142	NM_001303469	75973	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0.005000	0.323383	
mm_56913.1	chr6	119330662	119330862	-	1	NA	NA	NA	4	NM_172492	211187	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	0.095000	0.656716	
mm_80255.1	chr9	72807068	72807268	+	1	NA	NA	NA	-106	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.090000	0.746269	
mm_39340.1	chr5	8893474	8893674	+	1	NA	NA	NA	-147	NM_008830	18670	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.040000	0.567164	5(ACTTTTAGGGGC,+,0.00)
mm_21677.1	chr2	164425986	164426186	-	1	NA	NA	NA	17102	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.045000	0.557214	
mm_136743.1	chr17	8340937	8341137	+	1	NA	NA	NA	298	NM_178774	320111	Mm.442510	NM_178774	ENSMUSG00000055945	Prr18	9630019K15Rik	proline rich 18	protein-coding	0.115000	0.736318	
mm_119238.1	chr14	33351232	33351432	+	1	NA	NA	NA	59692	NM_001310452	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.155000	0.810945	
mm_23843.1	chr3	82380097	82380297	+	1	NA	NA	NA	22125	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0.020000	0.467662	-49(CACTATTTAGGG,-,0.00)
mm_9878.1	chr1	185441651	185441851	-	1	NA	NA	NA	68	NR_038006	319562	Mm.184335	NM_176943	ENSMUSG00000051295	9630028B13Rik	-	RIKEN cDNA 9630028B13 gene	ncRNA	0.020000	0.532338	
mm_90996.1	chr10	13967542	13967742	-	1	NA	NA	NA	1263	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.050000	0.611940	
mm_71286.1	chr8	40921311	40921511	+	1	NA	NA	NA	-4822	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.000000	0.477612	
mm_102857.1	chr11	69399210	69399410	-	1	NA	NA	NA	-1076	NM_025915	67020	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.005000	0.313433	
mm_127039.1	chr15	96638573	96638773	+	1	NA	NA	NA	3289	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.010000	0.358209	
mm_136633.1	chr17	5700002	5700202	+	1	NA	NA	NA	-98555	NR_045081	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.010000	0.427861	
mm_83774.1	chr9	52112901	52113101	-	1	NA	NA	NA	-2622	NR_105750	102465150		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	0.005000	0.442786	
mm_131992.1	chr16	25043282	25043482	+	1	NA	NA	NA	-16257	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.015000	0.482587	
mm_108604.1	chr12	85472265	85472465	+	1	NA	NA	NA	-1536	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.085000	0.606965	
mm_1996.1	chr1	87126714	87126914	+	1	NA	NA	NA	1806	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.015000	0.502488	
mm_62742.1	chr7	111028925	111029125	+	1	NA	NA	NA	74	NM_009431	22083	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0.085000	0.656716	
mm_47226.1	chr5	121374282	121374482	-	1	NA	NA	NA	11233	NM_001163470	231712	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.020000	0.507463	
mm_143988.1	chr17	87641383	87641583	-	1	NA	NA	NA	5504	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.015000	0.417910	
mm_93586.1	chr10	116973126	116973326	-	1	NA	NA	NA	6952	NR_027846	103175	Mm.27138	NR_027846	ENSMUSG00000031294	D630029K05Rik	AI314111|AI875589	RIKEN cDNA D630029K05 gene	ncRNA	0.045000	0.487562	
mm_73562.1	chr8	109494103	109494303	+	1	NA	NA	NA	176	NM_019938	56523	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	0.005000	0.398010	
mm_127394.1	chr15	101128453	101128653	+	1	NA	NA	NA	31	NM_001277257	11482	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	0.025000	0.532338	
mm_41863.1	chr5	104440590	104440790	+	1	NA	NA	NA	4498	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.000000	0.358209	
mm_15019.1	chr2	152669401	152669601	+	1	NA	NA	NA	40	NM_001159552	14950	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	0.135000	0.661692	
mm_140721.1	chr17	15433217	15433417	-	1	NA	NA	NA	37071	NM_024203	67544	Mm.35039	NM_024203	ENSMUSG00000014763	Fam120b	4932442K08Rik|AW049283|AW413338|CCPG|Pgcc1|mKIAA1838	family with sequence similarity 120, member B	protein-coding	0.020000	0.398010	
mm_37002.1	chr4	110351828	110352028	-	1	NA	NA	NA	-17	NM_001163397	15572	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein-coding	0.110000	0.711443	
mm_148801.1	chr19	6244740	6244940	+	1	NA	NA	NA	3172	NM_194348	329015	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0.010000	0.582090	
mm_118795.1	chr14	24486972	24487172	+	1	NA	NA	NA	-26	NM_001081247	218832	Mm.343610	NM_183157	ENSMUSG00000025280	Polr3a	9330175N20Rik|BC053071|RPC1|RPC155	polymerase (RNA) III (DNA directed) polypeptide A	protein-coding	0.085000	0.611940	
mm_59798.1	chr7	29001512	29001712	+	1	NA	NA	NA	18758	NM_008279	26411	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.025000	0.582090	
mm_52375.1	chr6	113077495	113077695	+	1	NA	NA	NA	-44	NM_028385	72895	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0.110000	0.756219	-36(CCTTTTCTGCCC,+,0.00)
mm_132094.1	chr16	31275310	31275510	+	1	NA	NA	NA	-133	NM_025800	66849	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	0.045000	0.572139	
mm_104291.1	chr11	90388429	90388629	-	1	NA	NA	NA	2388	NM_172563	217082	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0.040000	0.437811	24(CTTTCTAAAAGG,-,0.00),63(CCCTTTAAAAAT,-,0.00),64(CCTTTAAAAATC,+,0.00)
mm_141911.1	chr17	34972054	34972254	-	1	NA	NA	NA	2	NM_010479	193740	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	0.080000	0.636816	-33(CTCCTTAAAGGC,-,0.00),-31(CCTTAAAGGCGC,+,0.00)
mm_6524.1	chr1	74587903	74588103	-	1	NA	NA	NA	25	NM_001310668	77264	Mm.207298	NM_029888	ENSMUSG00000026135	Zfp142	9330177B18Rik|BB154236|mKIAA0236	zinc finger protein 142	protein-coding	0.065000	0.646766	
mm_69784.1	chr7	141094779	141094979	-	1	NA	NA	NA	5667	NM_023059	24058	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0.030000	0.601990	
mm_172006.1	chr6	109505130	109505330	-	1	NA	NA	NA	676589	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.075000	0.547264	-44(AACTTTAAATGG,-,0.00)
mm_100697.1	chr11	3531291	3531491	-	1	NA	NA	NA	7901	NM_013870	29856	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.010000	0.646766	
mm_115547.1	chr13	8870871	8871071	-	1	NA	NA	NA	73	NM_001039389	207615	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.110000	0.636816	
mm_167078.1	chr7	100706727	100706927	+	1	NA	NA	NA	125	NM_178764	319604	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0.105000	0.686567	
mm_160487.1	chr8	125891007	125891207	-	1	NA	NA	NA	7210	NM_175561	270109	Mm.145535	NM_175561	ENSMUSG00000060212	Pcnx2	A830048P05|AU067631|E330039K12Rik|Pcnxl2|mKIAA0435	pecanex homolog 2	protein-coding	0.020000	0.567164	
mm_75783.1	chr8	70029414	70029614	-	1	NA	NA	NA	13220	NM_001167939	74549	Mm.269061	NM_028993	ENSMUSG00000031858	Mau2	9130404D08Rik|A930019L04Rik|C77863|C79014|Mau-2|mKIAA0892	MAU2 sister chromatid cohesion factor	protein-coding	0.005000	0.407960	41(TCATATATAGAC,+,0.00)
mm_118480.1	chr14	11824265	11824465	+	1	NA	NA	NA	270812	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.010000	0.427861	
mm_13749.1	chr2	118124090	118124290	+	1	NA	NA	NA	12314	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.035000	0.467662	
mm_167899.1	chrX	73494958	73495158	-	1	NA	NA	NA	-8028	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.005000	0.457711	
mm_68077.1	chr7	101869226	101869426	-	1	NA	NA	NA	1462	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.020000	0.542289	
mm_10384.1	chr2	12301161	12301361	+	1	NA	NA	NA	15	NR_040353	338535	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.030000	0.487562	
mm_133259.1	chr16	77329495	77329695	+	1	NA	NA	NA	267	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.030000	0.527363	
mm_79393.1	chr9	54863733	54863933	+	1	NA	NA	NA	78	NM_022655	64602	Mm.208991	NM_022655	ENSMUSG00000032293	Ireb2	D9Ertd85e|Irp2	iron responsive element binding protein 2	protein-coding	0.090000	0.701493	
mm_144742.1	chr18	35582700	35582900	+	1	NA	NA	NA	-15867	NM_026420	67869	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	0.005000	0.437811	
mm_38757.1	chr4	147868410	147868610	-	1	NA	NA	NA	209	NM_001025365	28010	Mm.250504	NM_133873	ENSMUSG00000029022	Miip	AA553001|AI853621|D4Wsu114e|IIP45	migration and invasion inhibitory protein	protein-coding	0.080000	0.651741	
mm_136993.1	chr17	17402724	17402924	+	1	NA	NA	NA	138	NM_025681	66643	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.000000	0.467662	
mm_4841.1	chr1	186926821	186927021	+	1	NA	NA	NA	-40495	NM_033077	110957	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding	0.020000	0.462687	
mm_144139.1	chr18	4993775	4993975	+	1	NA	NA	NA	-52714	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.010000	0.517413	
mm_63.1	chr1	6598402	6598602	+	1	NA	NA	NA	111271	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.318408	
mm_25014.1	chr3	97978854	97979054	+	1	NA	NA	NA	-34584	NM_010928	18129	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.005000	0.507463	
mm_72054.1	chr8	71367542	71367742	+	1	NA	NA	NA	425	NM_025917	67023	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.020000	0.621891	
mm_146376.1	chr18	82584875	82585075	+	1	NA	NA	NA	30467	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.025000	0.597015	-77(GCTTTTAAGAAC,+,0.00)
mm_77754.1	chr8	128488457	128488657	-	1	NA	NA	NA	129316	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.020000	0.427861	
mm_49987.1	chr6	41046757	41046957	+	1	NA	NA	NA	-11348	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.472637	
mm_24388.1	chr3	90260184	90260384	+	1	NA	NA	NA	6003	NM_028881	74343	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2|mTORC2	CREB regulated transcription coactivator 2	protein-coding	0.000000	0.577114	
mm_78074.1	chr9	15520732	15520932	+	1	NA	NA	NA	15337	NM_133214	170748	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	0.015000	0.547264	
mm_33522.1	chr4	130930742	130930942	+	1	NA	NA	NA	-13543	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.010000	0.527363	
mm_151133.1	chr19	50252492	50252692	+	1	NA	NA	NA	426054	NM_001252501	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.030000	0.507463	
mm_144882.1	chr18	36795936	36796136	+	1	NA	NA	NA	2113	NM_025594	66492	Mm.251155	NM_025594	ENSMUSG00000001383	Zmat2	2610510D14Rik|2900082I05Rik	zinc finger, matrin type 2	protein-coding	0.005000	0.407960	
mm_161558.1	chr16	14163311	14163511	-	1	NA	NA	NA	136	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.100000	0.701493	
mm_84931.1	chr9	82903063	82903263	-	1	NA	NA	NA	72326	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.005000	0.472637	
mm_114712.1	chr13	83574380	83574580	+	1	NA	NA	NA	873	NM_001347569	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.010000	0.393035	
mm_94667.1	chr11	17221196	17221396	+	1	NA	NA	NA	9403	NM_178909	103784	Mm.298132	NM_178909	ENSMUSG00000078970	Wdr92	AI553587|HZGJ	WD repeat domain 92	protein-coding	0.015000	0.427861	
mm_128080.1	chr15	27680038	27680238	-	1	NA	NA	NA	1404	NM_001242424	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.015000	0.353234	
mm_160881.1	chr11	69405864	69406064	-	1	NA	NA	NA	7711	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.035000	0.666667	
mm_27167.1	chr3	33143203	33143403	-	1	NA	NA	NA	-112	NM_001163516	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.175000	0.791045	
mm_114225.1	chr13	56501995	56502195	+	1	NA	NA	NA	-19849	NM_008373	16198	Mm.3006	NM_008373	ENSMUSG00000021538	Il9	Il-9|P40	interleukin 9	protein-coding	0.015000	0.542289	
mm_133653.1	chr16	91807100	91807300	+	1	NA	NA	NA	77829	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.005000	0.422886	
mm_83286.1	chr9	43106921	43107121	-	1	NA	NA	NA	-1303	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0.020000	0.412935	-34(TTGTATAAAAGG,-,0.00)
mm_99187.1	chr11	100862067	100862267	+	1	NA	NA	NA	1683	NM_001164062	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.015000	0.567164	
mm_142994.1	chr17	56300193	56300393	-	1	NA	NA	NA	-7	NM_029799	76920	Mm.329132	NM_029799	ENSMUSG00000073380	Arrdc5	1700013E09Rik	arrestin domain containing 5	protein-coding	0.030000	0.592040	
mm_172641.1	chr8	25463532	25463732	+	1	NA	NA	NA	-55127	NM_001079909	14182	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.015000	0.457711	
mm_63559.1	chr7	128083580	128083780	+	1	NA	NA	NA	21040	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.020000	0.467662	
mm_61794.1	chr7	83892166	83892366	+	1	NA	NA	NA	266	NM_023403	67943	Mm.117365	NM_023403	ENSMUSG00000038503	Mesdc2	2210015O11Rik|AW537813|mKIAA0081|mesd|msd	mesoderm development candidate 2	protein-coding	0.080000	0.651741	
mm_39607.1	chr5	24104913	24105113	+	1	NA	NA	NA	4423	NM_001161800	52323	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	0.010000	0.373134	-34(GTTTTTAAAGAG,+,0.00)
mm_100411.1	chr11	119425915	119426115	+	1	NA	NA	NA	35543	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.025000	0.427861	-32(TTTTTTATAGTC,+,0.00)
mm_161386.1	chr14	76415732	76415932	+	1	NA	NA	NA	11	NM_207652	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.060000	0.656716	-33(GAATATAAAGGG,-,0.00)
mm_5018.1	chr1	193153012	193153212	+	1	NA	NA	NA	0	NM_016851	54139	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	0.070000	0.691542	
mm_97669.1	chr11	79660647	79660847	+	1	NA	NA	NA	14339	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	0.130000	0.721393	
mm_92096.1	chr10	62887326	62887526	-	1	NA	NA	NA	-7412	NM_001253857	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.060000	0.631841	
mm_83112.1	chr9	40376245	40376445	-	1	NA	NA	NA	42873	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.035000	0.626866	
mm_97078.1	chr11	73009629	73009829	+	1	NA	NA	NA	-9279	NM_018883	55984	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	0.025000	0.597015	
mm_11169.1	chr2	28560477	28560677	+	1	NA	NA	NA	2826	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.030000	0.537313	
mm_52069.1	chr6	97806979	97807179	+	1	NA	NA	NA	21	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.090000	0.711443	
mm_161472.1	chr15	79505187	79505387	-	1	NA	NA	NA	-46	NM_008427	16520	Mm.39759	NM_008427	ENSMUSG00000044216	Kcnj4	IRK3|Kcnf2|MB-IRK3	potassium inwardly-rectifying channel, subfamily J, member 4	protein-coding	0.150000	0.761194	
mm_97859.1	chr11	83116693	83116893	+	1	NA	NA	NA	-52	NM_011407	20555	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0.020000	0.502488	
mm_122765.1	chr14	54253774	54253974	-	1	NA	NA	NA	55	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.120000	0.656716	
mm_12400.1	chr2	70458851	70459051	+	1	NA	NA	NA	-15972	NM_022435	64406	Mm.423397	NM_022435	ENSMUSG00000075304	Sp5	-	trans-acting transcription factor 5	protein-coding	0.025000	0.477612	
mm_119591.1	chr14	50947851	50948051	+	1	NA	NA	NA	3648	NM_013632	18950	Mm.17932	NM_013632	ENSMUSG00000021871	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	0.020000	0.502488	
mm_54696.1	chr6	39557624	39557824	-	1	NA	NA	NA	110	NM_172477	209773	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.165000	0.840796	
mm_47288.1	chr5	122131889	122132089	-	1	NA	NA	NA	2904	NM_001289811	330188	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0.110000	0.661692	
mm_29566.1	chr3	116968445	116968645	-	1	NA	NA	NA	278	NR_040596	74654	Mm.410820	NR_040596	ENSMUSG00000080907	4930455H04Rik	-	RIKEN cDNA 4930455H04 gene	ncRNA	0.020000	0.487562	
mm_16892.1	chr2	13223234	13223434	-	1	NA	NA	NA	48081	NM_009105	20163	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.015000	0.432836	-50(TCTTATATGGGG,+,0.00)
mm_44495.1	chr5	23684498	23684698	-	1	NA	NA	NA	28069	NR_038090	433855	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	0.000000	0.492537	-67(GGTCATAAAAGG,-,0.00)
mm_19251.1	chr2	84773289	84773489	-	1	NA	NA	NA	2040	NM_009776	12258	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.015000	0.567164	
mm_170999.1	chr2	75662818	75663018	+	1	NA	NA	NA	3628	NR_033513	627828	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	0.000000	0.422886	
mm_68123.1	chr7	102120213	102120413	-	1	NA	NA	NA	-3600	NM_001081424	504186	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	0.000000	0.422886	25(GCTCATAAGGGC,+,0.00)
mm_48426.1	chr5	140564966	140565166	-	1	NA	NA	NA	1	NM_030022	77998	Mm.160040	NM_030022	ENSMUSG00000036586	Grifin	E130101O17Rik	galectin-related inter-fiber protein	protein-coding	0.015000	0.641791	
mm_123529.1	chr14	66803918	66804118	-	1	NA	NA	NA	64582	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.000000	0.363184	
mm_25820.1	chr3	127861500	127861700	+	1	NA	NA	NA	-24108	NM_145964	211556	Mm.403486	NM_145964	ENSMUSG00000074238	Ap1ar	AA407621|C78909|Gadkin	adaptor-related protein complex 1 associated regulatory protein	protein-coding	0.040000	0.477612	
mm_47765.1	chr5	131537851	131538051	-	1	NA	NA	NA	-230429	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.105000	0.701493	
mm_16648.1	chr2	6212940	6213140	-	1	NA	NA	NA	-46	NM_024208	67856	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0.045000	0.631841	13(AGGTCTAAAAGG,-,0.00)
mm_31643.1	chr4	59581523	59581723	+	1	NA	NA	NA	60	NM_024255	72479	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0.100000	0.641791	
mm_64021.1	chr7	140287871	140288071	+	1	NA	NA	NA	-34730	NM_146956	258958	Mm.347648	NM_146956	ENSMUSG00000061489	Olfr525	MOR251-2	olfactory receptor 525	protein-coding	0.000000	0.243781	
mm_10637.1	chr2	20370116	20370316	+	1	NA	NA	NA	80303	NM_001081006	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.000000	0.383085	
mm_74246.1	chr8	124830922	124831122	+	1	NA	NA	NA	32007	NM_025615	66523	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	0.000000	0.497512	
mm_83388.1	chr9	44604492	44604692	-	1	NA	NA	NA	-300	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.125000	0.751244	
mm_105335.1	chr11	102946674	102946874	-	1	NA	NA	NA	-313	NM_011795	23829	Mm.57154	NM_011795	ENSMUSG00000045532	C1ql1	C1qrf|CRF|CTRP14|gliacolin	complement component 1, q subcomponent-like 1	protein-coding	0.115000	0.771144	
mm_64046.1	chr7	140835123	140835323	+	1	NA	NA	NA	85	NM_001347605	76974	Mm.272359	NM_029821	ENSMUSG00000025481	Urah	1190003J15Rik|2810420C16Rik	urate (5-hydroxyiso-) hydrolase	protein-coding	0.035000	0.592040	
mm_80370.1	chr9	75345009	75345209	+	1	NA	NA	NA	-2649	NM_013479	12049	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	0.020000	0.527363	
mm_10460.1	chr2	14305244	14305444	+	1	NA	NA	NA	44341	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.025000	0.348259	
mm_80913.1	chr9	100645148	100645348	+	1	NA	NA	NA	1625	NM_009282	20842	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	0.010000	0.313433	
mm_109366.1	chr12	109643254	109643454	+	1	NA	NA	NA	516	NR_046303	449561		NR_046303		AF357426	MBII-49	snoRNA AF357426	snoRNA	0.000000	0.353234	
mm_54571.1	chr6	38046896	38047096	-	1	NA	NA	NA	0	NM_177200	320590	Mm.197449	NM_177200	ENSMUSG00000029830	Svopl	9430071P14Rik	SV2 related protein homolog (rat)-like	protein-coding	0.015000	0.572139	-36(CGCTCTAAAAGG,-,0.00)
mm_29868.1	chr3	130709335	130709535	-	1	NA	NA	NA	9	NM_025509	66357	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0.060000	0.562189	
mm_72809.1	chr8	87473154	87473354	+	1	NA	NA	NA	138	NR_125722	100040294	Mm.213632	NR_033430	ENSMUSG00000097248	Gm2694	C230036H16Rik|linc1582	predicted gene 2694	ncRNA	0.100000	0.631841	
mm_106070.1	chr11	116168072	116168272	-	1	NA	NA	NA	6	NM_172571	217335	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.080000	0.626866	-9(GTCTATTTGAGG,-,0.00)
mm_24586.1	chr3	93444871	93445071	+	1	NA	NA	NA	2641	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.045000	0.611940	
mm_119015.1	chr14	30008797	30008997	+	1	NA	NA	NA	-1	NM_019583	50905	Mm.269363	NM_019583	ENSMUSG00000015966	Il17rb	Evi27|IL-17ER|IL-17Rh1|IL17RH1|Il17br	interleukin 17 receptor B	protein-coding	0.090000	0.721393	
mm_53973.1	chr6	6217039	6217239	-	1	NA	NA	NA	34	NM_015829	50799	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	0.100000	0.726368	
mm_147138.1	chr18	36416496	36416696	-	1	NA	NA	NA	37899	NM_026027	67199	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0.020000	0.407960	-76(GTCCATTTATGG,-,0.00),-74(CCATTTATGGGT,+,0.00)
mm_27943.1	chr3	79628765	79628965	-	1	NA	NA	NA	-98	NM_025794	66841	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	0.040000	0.552239	
mm_17564.1	chr2	30205608	30205808	-	1	NA	NA	NA	-9	NM_172404	70266	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	0.045000	0.547264	-16(GCCTCTTTAAAG,-,0.00),-15(CCTCTTTAAAGG,-,0.00),-14(CTCTTTAAAGGA,+,0.00),-14(CTCTTTAAAGGA,-,0.00)
mm_4968.1	chr1	191281359	191281559	+	1	NA	NA	NA	36659	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.015000	0.577114	
mm_152935.1	chr19	28680016	28680216	-	1	NA	NA	NA	-39	NM_175459	226075	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	0.125000	0.771144	
mm_729.1	chr1	43189008	43189208	+	1	NA	NA	NA	7653	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.060000	0.577114	
mm_68542.1	chr7	114070082	114070282	-	1	NA	NA	NA	47599	NM_025846	66922	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.010000	0.512438	
mm_43379.1	chr5	135689098	135689298	+	1	NA	NA	NA	53	NM_008898	18984	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.105000	0.716418	
mm_32433.1	chr4	107200491	107200691	+	1	NA	NA	NA	-8589	NM_001081272	546840	Mm.331755	NM_001081272	ENSMUSG00000070877	Ldlrad1	OTTMUSG00000008594	low density lipoprotein receptor class A domain containing 1	protein-coding	0.005000	0.343284	
mm_36496.1	chr4	83285093	83285293	-	1	NA	NA	NA	38996	NM_027238	69863	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.025000	0.522388	
mm_153335.1	chr19	38223980	38224180	-	1	NA	NA	NA	52	NM_001081075	70567	Mm.30607	NM_001081075	ENSMUSG00000054237	Fra10ac1	5730455O13Rik|AI448293	FRA10AC1 homolog (human)	protein-coding	0.120000	0.716418	
mm_52916.1	chr6	122848077	122848277	+	1	NA	NA	NA	7980	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.005000	0.432836	
mm_113481.1	chr13	37345196	37345396	+	1	NA	NA	NA	-49	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.050000	0.487562	
mm_11617.1	chr2	34608403	34608603	+	1	NA	NA	NA	146729	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.010000	0.487562	
mm_170904.1	chr2	30071435	30071635	+	1	NA	NA	NA	5061	NM_001204875	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.005000	0.447761	
mm_82987.1	chr9	36533649	36533849	-	1	NA	NA	NA	8214	NM_001033783	434396	Mm.118836	NM_001033783	ENSMUSG00000074448	Gm5615	EG434396|Pate-H|Pate9	predicted gene 5615	protein-coding	0.000000	0.487562	
mm_7337.1	chr1	105663551	105663751	-	1	NA	NA	NA	25	NM_013784	27392	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding	0.050000	0.606965	
mm_36619.1	chr4	89310923	89311123	-	1	NA	NA	NA	9	NM_007670	12579	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)	protein-coding	0.090000	0.671642	
mm_74704.1	chr8	16992881	16993081	-	1	NA	NA	NA	542404	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.000000	0.298507	
mm_67311.1	chr7	79466032	79466232	-	1	NA	NA	NA	141	NM_017462	18975	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	0.165000	0.771144	
mm_48018.1	chr5	136171071	136171271	-	1	NA	NA	NA	-515	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.045000	0.557214	
mm_161064.1	chr12	72071010	72071210	-	1	NA	NA	NA	-119	NM_181752	238252	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding	0.090000	0.651741	
mm_67674.1	chr7	88307990	88308190	-	1	NA	NA	NA	30005	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.005000	0.378109	
mm_14624.1	chr2	136773886	136774086	+	1	NA	NA	NA	60536	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.015000	0.472637	
mm_37519.1	chr4	124451220	124451420	-	1	NA	NA	NA	34639	NR_040774	78460	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA	0.015000	0.572139	
mm_99956.1	chr11	113387523	113387723	+	1	NA	NA	NA	-177954	NR_040276	319871	Mm.383743	NR_040276	ENSMUSG00000085421	4732490B19Rik	-	RIKEN cDNA 4732490B19 gene	ncRNA	0.015000	0.507463	-1(CCATTTAGACGG,+,0.00)
mm_23624.1	chr3	65958316	65958516	+	1	NA	NA	NA	-191	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.110000	0.681592	
mm_78912.1	chr9	44981718	44981918	+	1	NA	NA	NA	32	NM_013487	12500	Mm.4527	NM_013487	ENSMUSG00000032094	Cd3d	T3d	CD3 antigen, delta polypeptide	protein-coding	0.010000	0.482587	
mm_87533.1	chr10	53467843	53468043	+	1	NA	NA	NA	51046	NR_037973	100502868	Mm.297722	NR_037973		Gm20597	B230314j19	predicted gene, 20597	ncRNA	0.000000	0.447761	
mm_98242.1	chr11	88164812	88165012	+	1	NA	NA	NA	-4653	NM_001172099	103841	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	0.025000	0.626866	
mm_72231.1	chr8	74873032	74873232	+	1	NA	NA	NA	-42	NM_027837	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	0.000000	0.572139	
mm_153961.1	chr19	47787018	47787218	-	1	NA	NA	NA	-31961	NR_106165	102465883		NR_106165	ENSMUSG00000099069	Mir8090	Gm27862|mmu-mir-8090	microRNA 8090	ncRNA	0.100000	0.542289	
mm_75484.1	chr8	48710937	48711137	-	1	NA	NA	NA	-36347	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.000000	0.293532	-1(GCCTATATGAGA,-,0.00)
mm_35510.1	chr4	41094639	41094839	-	1	NA	NA	NA	3444	NM_016689	11828	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	0.030000	0.567164	
mm_70641.1	chr8	14017319	14017519	+	1	NA	NA	NA	18479	NR_131136	546036	Mm.31785	NR_131136	ENSMUSG00000110058	Gm5907	EG546036|Gm845	predicted gene 5907	ncRNA	0.020000	0.532338	
mm_159276.1	chr2	165296864	165297064	-	1	NA	NA	NA	-9126	NR_045544	228875	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.035000	0.552239	
mm_18782.1	chr2	73659663	73659863	-	1	NA	NA	NA	660	NM_175752	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	0.010000	0.402985	
mm_89189.1	chr10	86347109	86347309	+	1	NA	NA	NA	46797	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.015000	0.542289	
mm_112633.1	chr13	15994174	15994374	+	1	NA	NA	NA	-17577	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.000000	0.393035	-34(GGCTATAAAAGG,-,0.00)
mm_148403.1	chr19	3851831	3852031	+	1	NA	NA	NA	158	NR_073190	12660	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.135000	0.736318	
mm_14836.1	chr2	147366049	147366249	+	1	NA	NA	NA	1155	NM_008780	18503	Mm.315502	NM_008780	ENSMUSG00000037034	Pax1	Pax-1|hbs|hunchback|un|undulated|wt	paired box 1	protein-coding	0.045000	0.582090	
mm_143939.1	chr17	86230298	86230498	-	1	NA	NA	NA	56780	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.035000	0.532338	
mm_75241.1	chr8	39637752	39637952	-	1	NA	NA	NA	4826	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.422886	
mm_96239.1	chr11	62551663	62551863	+	1	NA	NA	NA	32	NM_001313984	22187	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.100000	0.636816	
mm_92659.1	chr10	80417302	80417502	-	1	NA	NA	NA	-10581	NM_025650	66594	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0.030000	0.631841	
mm_104499.1	chr11	95864544	95864744	-	1	NA	NA	NA	5827	NR_045187	73906	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	0.015000	0.373134	
mm_29468.1	chr3	113630008	113630208	-	1	NA	NA	NA	41	NM_026043	67225	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding	0.115000	0.661692	
mm_114563.1	chr13	74493977	74494177	+	1	NA	NA	NA	-127	NM_146231	235956	Mm.296909	NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.045000	0.547264	
mm_20419.1	chr2	129301448	129301648	-	1	NA	NA	NA	4178	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.010000	0.393035	76(CAGTCTAAAAGG,-,0.00)
mm_134556.1	chr16	20241188	20241388	-	1	NA	NA	NA	70	NM_198599	208158	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	0.135000	0.741294	
mm_136079.1	chr16	84835182	84835382	-	1	NA	NA	NA	158	NM_008065	14390	Mm.18974	NM_008065	ENSMUSG00000008976	Gabpa	GABPalpha	GA repeat binding protein, alpha	protein-coding	0.075000	0.631841	
mm_52174.1	chr6	99204349	99204549	+	1	NA	NA	NA	62066	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.005000	0.487562	
mm_7812.1	chr1	131760061	131760261	-	1	NA	NA	NA	16139	NM_177243	320718	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	0.010000	0.417910	
mm_33606.1	chr4	132581024	132581224	+	1	NA	NA	NA	17057	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.015000	0.537313	
mm_54182.1	chr6	23839379	23839579	-	1	NA	NA	NA	-58	NM_001252105	320405	Mm.259632	NM_153163	ENSMUSG00000017978	Cadps2	A230044C21Rik|Caps-2|Caps2|Cpd2	Ca2+-dependent activator protein for secretion 2	protein-coding	0.200000	0.815920	
mm_164745.1	chr17	73950244	73950444	+	1	NA	NA	NA	-148	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.005000	0.522388	
mm_97216.1	chr11	75630742	75630942	+	1	NA	NA	NA	-178	NM_008916	19062	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.105000	0.691542	
mm_18554.1	chr2	65188656	65188856	-	1	NA	NA	NA	49870	NM_177025	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.030000	0.462687	
mm_127916.1	chr15	9530217	9530417	-	1	NA	NA	NA	-441	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.015000	0.442786	-33(TTGTTTAAAAGA,-,0.00)
mm_38166.1	chr4	135216881	135217081	-	1	NA	NA	NA	55779	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.020000	0.507463	
mm_13684.1	chr2	116972740	116972940	+	1	NA	NA	NA	72688	NR_040335	320975	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.010000	0.477612	
mm_37196.1	chr4	117682121	117682321	-	1	NA	NA	NA	4	NM_023178	66233	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	0.055000	0.587065	
mm_46163.1	chr5	96162519	96162719	-	1	NA	NA	NA	-629	NM_144910	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.120000	0.706468	
mm_32753.1	chr4	116686802	116687002	+	1	NA	NA	NA	-880	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.025000	0.462687	
mm_96178.1	chr11	61653130	61653330	+	1	NA	NA	NA	-91	NM_027817	71520	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.010000	0.527363	-77(GGGTTTATGAGC,-,0.00)
mm_76448.1	chr8	85080560	85080760	-	1	NA	NA	NA	86	NM_026399	67836	Mm.334680	NM_026399	ENSMUSG00000005150	Wdr83	1500041N16Rik|Morg1	WD repeat domain containing 83	protein-coding	0.050000	0.492537	
mm_101718.1	chr11	42182160	42182360	-	1	NA	NA	NA	670	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding	0.115000	0.676617	
mm_102874.1	chr11	69409318	69409518	-	1	NA	NA	NA	4257	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.070000	0.696517	
mm_137810.1	chr17	30004964	30005164	+	1	NA	NA	NA	-23	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.140000	0.825871	
mm_171496.1	chr4	146160034	146160234	+	1	NA	NA	NA	2444	NM_001177545	667666	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164|OTTMUSG00000010694	zinc finger protein 600	protein-coding	0.005000	0.517413	
mm_67844.1	chr7	98562260	98562460	-	1	NA	NA	NA	68138	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.015000	0.457711	
mm_67079.1	chr7	68264549	68264749	-	1	NA	NA	NA	-416	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.025000	0.492537	
mm_73745.1	chr8	114417903	114418103	+	1	NA	NA	NA	-31	NM_001007223	403395	Mm.81117	NM_001007223	ENSMUSG00000008874	Clec3a	1110019O10Rik|Clecsf1|Gm796	C-type lectin domain family 3, member a	protein-coding	0.015000	0.597015	
mm_15623.1	chr2	162661116	162661316	+	1	NA	NA	NA	53	NR_033569	77288	Mm.376571	NR_033569		9430021M05Rik	-	RIKEN cDNA 9430021M05 gene	ncRNA	0.175000	0.820896	
mm_131846.1	chr16	23058439	23058639	+	1	NA	NA	NA	239	NM_001102412	16644	Mm.2160	NM_023125	ENSMUSG00000022875	Kng1	Kng	kininogen 1	protein-coding	0.025000	0.472637	
mm_22123.1	chr2	170195762	170195962	-	1	NA	NA	NA	-53187	NM_001159683	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.020000	0.557214	
mm_133105.1	chr16	65473356	65473556	+	1	NA	NA	NA	-47173	NM_008849	18736	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.010000	0.497512	
mm_70107.1	chr7	142664577	142664777	-	1	NA	NA	NA	2139	NM_001315488	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.005000	0.547264	81(GCCTTTAAGGAG,+,0.00),82(CCTTTAAGGAGC,+,0.00)
mm_149846.1	chr19	25052415	25052615	+	1	NA	NA	NA	52986	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.020000	0.467662	
mm_79198.1	chr9	48495284	48495484	+	1	NA	NA	NA	41	NM_001004191	434402	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	0.140000	0.651741	
mm_88878.1	chr10	81105869	81106069	+	1	NA	NA	NA	54	NM_001347144	26396	Mm.275436	NM_023138	ENSMUSG00000035027	Map2k2	AA589381|MEK2|MK2|Prkmk2	mitogen-activated protein kinase kinase 2	protein-coding	0.130000	0.711443	
mm_122242.1	chr14	33382734	33382934	-	1	NA	NA	NA	28190	NM_001310452	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.010000	0.427861	
mm_53261.1	chr6	127913733	127913933	+	1	NA	NA	NA	26211	NM_026743	68498	Mm.174368	NM_026743	ENSMUSG00000030351	Tspan11	1110014F12Rik|AU067806	tetraspanin 11	protein-coding	0.010000	0.472637	
mm_55793.1	chr6	82730745	82730945	-	1	NA	NA	NA	43609	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.050000	0.567164	
mm_8865.1	chr1	162813778	162813978	-	1	NA	NA	NA	-1329	NM_144878	226564	Mm.155164	NM_144878	ENSMUSG00000026692	Fmo4	D1Ertd532e	flavin containing monooxygenase 4	protein-coding	0.025000	0.467662	
mm_68643.1	chr7	118448100	118448300	-	1	NA	NA	NA	-4648	NM_138649	110058	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk	synaptotagmin XVII	protein-coding	0.095000	0.756219	
mm_125297.1	chr15	37071529	37071729	+	1	NA	NA	NA	-64227	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.005000	0.487562	
mm_78961.1	chr9	45245561	45245761	+	1	NA	NA	NA	21046	NR_106054	102466803		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.005000	0.507463	
mm_146257.1	chr18	77794438	77794638	+	1	NA	NA	NA	-12	NM_013831	19201	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.115000	0.731343	
mm_113074.1	chr13	23806899	23807099	+	1	NA	NA	NA	-28	NM_144836	218103	Mm.24030	NM_144836	ENSMUSG00000036110	Slc17a2	C730032N17Rik|NPT3	solute carrier family 17 (sodium phosphate), member 2	protein-coding	0.020000	0.417910	
mm_57095.1	chr6	122587954	122588154	-	1	NA	NA	NA	14390	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.000000	0.477612	
mm_23854.1	chr3	83009987	83010187	+	1	NA	NA	NA	2363	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.000000	0.427861	
mm_30481.1	chr3	155024971	155025171	-	1	NA	NA	NA	30336	NM_177066	435766	Mm.210428	NM_177066	ENSMUSG00000040086	Tnni3k	Cark|D830019J24Rik	TNNI3 interacting kinase	protein-coding	0.000000	0.432836	
mm_170341.1	chr18	48046587	48046787	+	1	NA	NA	NA	1352	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.050000	0.517413	
mm_15085.1	chr2	153232457	153232657	+	1	NA	NA	NA	-7116	NM_198617	241732	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.020000	0.547264	
mm_71074.1	chr8	34155354	34155554	+	1	NA	NA	NA	891	NM_026432	67887	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	0.010000	0.318408	
mm_117048.1	chr13	58385066	58385266	-	1	NA	NA	NA	59	NM_027335	70153	Mm.296610	NM_027335	ENSMUSG00000021550	2210016F16Rik	-	RIKEN cDNA 2210016F16 gene	protein-coding	0.130000	0.701493	
mm_136951.1	chr17	14943095	14943295	+	1	NA	NA	NA	11	NM_026451	67912	Mm.390949	NM_026451	ENSMUSG00000050088	1600012H06Rik	-	RIKEN cDNA 1600012H06 gene	protein-coding	0.100000	0.651741	
mm_113934.1	chr13	49652982	49653182	+	1	NA	NA	NA	4	NR_073167	70930	Mm.258915	NM_001081350	ENSMUSG00000021392	Nol8	4921532D18Rik|5730412B09Rik	nucleolar protein 8	protein-coding	0.070000	0.497512	
mm_26734.1	chr3	5576078	5576278	-	1	NA	NA	NA	70	NM_001163301	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.080000	0.606965	
mm_111247.1	chr12	84876341	84876541	-	1	NA	NA	NA	54	NM_013589	16997	Mm.3900	NM_013589	ENSMUSG00000002020	Ltbp2	AW208642	latent transforming growth factor beta binding protein 2	protein-coding	0.075000	0.626866	
mm_116676.1	chr13	49240558	49240758	-	1	NA	NA	NA	7505	NM_025491	66329	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.015000	0.631841	
mm_156474.1	chrX	143664282	143664482	+	1	NA	NA	NA	-1363	NM_001195049	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding	0.030000	0.547264	
mm_135029.1	chr16	32797337	32797537	-	1	NA	NA	NA	-2	NM_001145874	224116	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	0.030000	0.656716	
mm_132594.1	chr16	38457348	38457548	+	1	NA	NA	NA	-1485	NM_009855	12519	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0.020000	0.427861	
mm_40200.1	chr5	36936428	36936628	+	1	NA	NA	NA	52454	NM_011716	22393	Mm.20916	NM_011716	ENSMUSG00000039474	Wfs1	AI481085|wolframin	Wolfram syndrome 1 homolog (human)	protein-coding	0.020000	0.557214	
mm_38768.1	chr4	147904736	147904936	-	1	NA	NA	NA	73	NM_001285922	170731	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0.090000	0.641791	
mm_14612.1	chr2	136713368	136713568	+	1	NA	NA	NA	18	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.050000	0.601990	-49(GGCTATTAAAAG,-,0.00)
mm_72140.1	chr8	72008447	72008647	+	1	NA	NA	NA	1079	NM_024444	72054	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	0.010000	0.497512	
mm_166711.1	chr6	117675075	117675275	-	1	NA	NA	NA	76594	NR_045731	72263	Mm.443289	NR_045731	ENSMUSG00000099869	1700030F04Rik	-	RIKEN cDNA 1700030F04 gene	ncRNA	0.015000	0.497512	
mm_79508.1	chr9	57483813	57484013	+	1	NA	NA	NA	-15853	NM_001301635	56807	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	0.045000	0.542289	
mm_135512.1	chr16	48613752	48613952	-	1	NA	NA	NA	158104	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.010000	0.462687	
mm_151238.1	chr19	53807439	53807639	+	1	NA	NA	NA	-84692	NM_011050	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.000000	0.427861	
mm_108552.1	chr12	84417145	84417345	+	1	NA	NA	NA	45	NM_025525	66381	Mm.24846	NM_025525	ENSMUSG00000098134	Rnf113a2	2310020H19Rik|AI426758|Rnf113a	ring finger protein 113A2	protein-coding	0.120000	0.621891	
mm_69594.1	chr7	135716198	135716398	-	1	NA	NA	NA	81	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.145000	0.771144	
mm_62644.1	chr7	107665745	107665945	+	1	NA	NA	NA	59001	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.015000	0.552239	
mm_48520.1	chr5	142903170	142903370	-	1	NA	NA	NA	3484	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.010000	0.447761	
mm_112579.1	chr13	13698608	13698808	+	1	NA	NA	NA	-85351	NM_001302997	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0.000000	0.298507	26(GTTCTTAAAAGG,-,0.00),28(TCTTAAAAGGTC,+,0.00)
mm_17456.1	chr2	28556245	28556445	-	1	NA	NA	NA	7058	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.015000	0.547264	
mm_89677.1	chr10	97517422	97517622	+	1	NA	NA	NA	35191	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.035000	0.472637	
mm_103406.1	chr11	75439490	75439690	-	1	NA	NA	NA	-89	NM_008878	18816	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	0.020000	0.562189	
mm_86000.1	chr9	112231077	112231277	-	1	NA	NA	NA	1324	NM_001177616	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.005000	0.388060	
mm_2865.1	chr1	131713004	131713204	+	1	NA	NA	NA	24409	NM_001311096	226421	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0.010000	0.517413	
mm_103091.1	chr11	69920762	69920962	-	1	NA	NA	NA	85	NM_001166594	276770	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.120000	0.761194	
mm_144119.1	chr18	4590645	4590845	+	1	NA	NA	NA	-44184	NM_001081963	240185	Mm.33179	NM_001081963	ENSMUSG00000033960	9430020K01Rik	1110056P05Rik|Gm328|Jcad|mKIAA1462	RIKEN cDNA 9430020K01 gene	protein-coding	0.010000	0.467662	
mm_91726.1	chr10	44866697	44866897	-	1	NA	NA	NA	-200417	NM_011156	19072	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.010000	0.373134	
mm_5758.1	chr1	46888037	46888237	-	1	NA	NA	NA	-34628	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.010000	0.427861	-44(CTCCTTTAAAGA,-,0.00),-43(TCCTTTAAAGAC,+,0.00)
mm_126661.1	chr15	84257067	84257267	+	1	NA	NA	NA	25124	NM_133167	170736	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.020000	0.601990	-64(CCTTATATGGTA,+,0.00)
mm_93040.1	chr10	88356956	88357156	-	1	NA	NA	NA	19	NM_027878	71712	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.105000	0.726368	
mm_66116.1	chr7	31042245	31042445	-	1	NA	NA	NA	-14	NM_001287217	18301	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	0.015000	0.641791	
mm_157172.1	chrX	9469392	9469592	-	1	NA	NA	NA	-168	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.323383	
mm_138840.1	chr17	40222223	40222423	+	1	NA	NA	NA	-13714	NM_031190	18663	Mm.717	NM_031190	ENSMUSG00000031233	Pgk2	Pgk-2|Tcp-2	phosphoglycerate kinase 2	protein-coding	0.000000	0.358209	
mm_112027.1	chr12	111485689	111485889	-	1	NA	NA	NA	34	NM_001033248	212539	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0.120000	0.751244	
mm_143974.1	chr17	87427676	87427876	-	1	NA	NA	NA	-35	NM_029298	75467	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0.075000	0.611940	
mm_140164.1	chr17	80232646	80232846	+	1	NA	NA	NA	8257	NM_026053	67242	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem (nuclear organelle) associated protein 6	protein-coding	0.015000	0.507463	
mm_144386.1	chr18	20667522	20667722	+	1	NA	NA	NA	2372	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.005000	0.462687	
mm_127640.1	chr15	102473695	102473895	+	1	NA	NA	NA	3163	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.000000	0.378109	
mm_29129.1	chr3	105687293	105687493	-	1	NA	NA	NA	178	NM_017397	53975	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	0.120000	0.686567	
mm_117265.1	chr13	64370254	64370454	-	1	NA	NA	NA	166	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.105000	0.681592	
mm_33102.1	chr4	124703557	124703757	+	1	NA	NA	NA	2958	NM_010213	14201	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	0.010000	0.631841	
mm_79840.1	chr9	64810876	64811076	+	1	NA	NA	NA	-35	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.025000	0.542289	
mm_71744.1	chr8	64947116	64947316	+	1	NA	NA	NA	31	NM_028427	73067	Mm.294445	NM_028427	ENSMUSG00000025521	Tmem192	3110005G23Rik	transmembrane protein 192	protein-coding	0.135000	0.766169	
mm_159403.1	chr3	98510391	98510591	-	1	NA	NA	NA	-19	NM_001111336	15495	Mm.14309	NM_008294	ENSMUSG00000095143	Hsd3b4	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	protein-coding	0.010000	0.432836	
mm_142508.1	chr17	46153404	46153604	-	1	NA	NA	NA	47	NM_025649	66591	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	0.065000	0.572139	
mm_29959.1	chr3	133234850	133235050	-	1	NA	NA	NA	-61	NM_029953	77669	Mm.98630	NM_029953	ENSMUSG00000040969	Arhgef38	9130221D24Rik|D630013G24Rik	Rho guanine nucleotide exchange factor (GEF) 38	protein-coding	0.015000	0.542289	-50(AGGTATAAAAGA,-,0.00)
mm_151506.1	chr19	58731942	58732142	+	1	NA	NA	NA	3155	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.020000	0.552239	
mm_117995.1	chr13	100490025	100490225	-	1	NA	NA	NA	2484	NM_022011	23894	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	0.010000	0.358209	
mm_56164.1	chr6	87992516	87992716	-	1	NA	NA	NA	10933	NR_026990	434064	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	0.005000	0.353234	
mm_140437.1	chr17	88441441	88441641	+	1	NA	NA	NA	829	NM_180974	14236	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.095000	0.731343	
mm_63270.1	chr7	126760550	126760750	+	1	NA	NA	NA	1024	NM_011952	26417	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.005000	0.587065	
mm_44216.1	chr5	4757814	4758014	-	1	NA	NA	NA	302	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.100000	0.711443	
mm_122662.1	chr14	51913270	51913470	-	1	NA	NA	NA	118	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.085000	0.721393	
mm_149842.1	chr19	25033033	25033233	+	1	NA	NA	NA	33604	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.035000	0.462687	-26(GTCCTTAAAAAC,-,0.00)
mm_145645.1	chr18	61121922	61122122	+	1	NA	NA	NA	4554	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.010000	0.353234	
mm_147442.1	chr18	46525678	46525878	-	1	NA	NA	NA	193	NM_173423	240263	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.115000	0.726368	
mm_133584.1	chr16	91415957	91416157	+	1	NA	NA	NA	9822	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.020000	0.452736	77(CTCTTTATAAAG,-,0.00),79(CTTTATAAAGAT,+,0.00)
mm_10779.1	chr2	24336618	24336818	+	1	NA	NA	NA	-142	NM_031167	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.005000	0.522388	
mm_48966.1	chr6	4601044	4601244	+	1	NA	NA	NA	78	NM_145398	213819	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1	CAS1 domain containing 1	protein-coding	0.105000	0.706468	
mm_14784.1	chr2	145860049	145860249	+	1	NA	NA	NA	-43092	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.025000	0.542289	-32(CCTTATAAATGG,+,0.00),-32(CCTTATAAATGG,-,0.00),-14(TTCTATAAAAAC,-,0.00)
mm_19170.1	chr2	84342699	84342899	-	1	NA	NA	NA	82467	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.005000	0.442786	
mm_151521.1	chr19	58740363	58740563	+	1	NA	NA	NA	11576	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.020000	0.457711	
mm_162889.1	chr10	109309354	109309554	-	1	NA	NA	NA	-298479	NM_001252341	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding	0.010000	0.437811	
mm_103847.1	chr11	83078070	83078270	-	1	NA	NA	NA	13058	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.010000	0.422886	-41(AACCTTAAAGGG,-,0.00),-39(CCTTAAAGGGGG,+,0.00)
mm_147441.1	chr18	46525658	46525858	-	1	NA	NA	NA	213	NM_173423	240263	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.120000	0.721393	
mm_116735.1	chr13	51739677	51739877	-	1	NA	NA	NA	53970	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.000000	0.537313	
mm_34513.1	chr4	148895816	148896016	+	1	NA	NA	NA	91524	NM_027195	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.020000	0.527363	
mm_141554.1	chr17	32205892	32206092	-	1	NA	NA	NA	-16443	NM_001347341	71932	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9	epoxide hydrolase 3	protein-coding	0.005000	0.363184	
mm_32460.1	chr4	107381028	107381228	+	1	NA	NA	NA	13344	NM_028355	72787	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0.030000	0.562189	
mm_110255.1	chr12	31634475	31634675	-	1	NA	NA	NA	22	NM_007530	12033	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	0.200000	0.820896	
mm_155139.1	chrX	50841342	50841542	+	1	NA	NA	NA	71	NM_001313744	70415	Mm.46254	NM_133729	ENSMUSG00000031112	Stk26	2610018G03Rik|Mst4	serine/threonine kinase 26	protein-coding	0.060000	0.656716	
mm_82175.1	chr9	123851199	123851399	+	1	NA	NA	NA	362	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.035000	0.537313	
mm_146370.1	chr18	82584554	82584754	+	1	NA	NA	NA	30146	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.005000	0.562189	-66(CCCCCTAAAGAG,-,0.00)
mm_110960.1	chr12	76795405	76795605	-	1	NA	NA	NA	49	NM_030677	14776	Mm.441856	NM_030677	ENSMUSG00000042808	Gpx2	GI-GPx|GPx-GI|GSHPx-2|GSHPx-GI	glutathione peroxidase 2	protein-coding	0.020000	0.527363	
mm_123506.1	chr14	66235450	66235650	-	1	NA	NA	NA	-21998	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.010000	0.467662	
mm_95083.1	chr11	33163238	33163438	+	1	NA	NA	NA	-132	NM_008722	18148	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	0.105000	0.671642	
mm_87558.1	chr10	56083760	56083960	+	1	NA	NA	NA	-23057	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding	0.000000	0.412935	
mm_61904.1	chr7	90130262	90130462	+	1	NA	NA	NA	130	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.110000	0.771144	
mm_133377.1	chr16	84710463	84710663	+	1	NA	NA	NA	-2460	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.025000	0.437811	
mm_3669.1	chr1	153653041	153653241	+	1	NA	NA	NA	104	NM_026380	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding	0.050000	0.651741	
mm_126134.1	chr15	78341537	78341737	+	1	NA	NA	NA	-6962	NR_106137	102465776		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0.020000	0.547264	
mm_33923.1	chr4	136622542	136622742	+	1	NA	NA	NA	21	NM_001243262	242707	Mm.448979	NM_001243262	ENSMUSG00000070683	Lactbl1	-	lactamase, beta-like 1	protein-coding	0.020000	0.542289	
mm_165416.1	chr2	147531681	147531881	+	1	NA	NA	NA	166787	NM_008780	18503	Mm.315502	NM_008780	ENSMUSG00000037034	Pax1	Pax-1|hbs|hunchback|un|undulated|wt	paired box 1	protein-coding	0.020000	0.467662	
mm_113099.1	chr13	24375990	24376190	+	1	NA	NA	NA	-39032	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.015000	0.492537	
mm_52346.1	chr6	110940771	110940971	+	1	NA	NA	NA	295273	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.000000	0.313433	
mm_51057.1	chr6	65652995	65653195	+	1	NA	NA	NA	-18516	NM_172399	68169	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding	0.005000	0.323383	
mm_43190.1	chr5	128736029	128736229	+	1	NA	NA	NA	-117	NM_021311	57749	Mm.272720	NM_021311	ENSMUSG00000029423	Piwil1	MIWI	piwi-like RNA-mediated gene silencing 1	protein-coding	0.065000	0.676617	
mm_30313.1	chr3	151731258	151731458	-	1	NA	NA	NA	18601	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.005000	0.368159	-53(CCCTTTAGAGTG,+,0.00)
mm_101721.1	chr11	42182313	42182513	-	1	NA	NA	NA	517	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding	0.025000	0.447761	
mm_45724.1	chr5	86065453	86065653	-	1	NA	NA	NA	30	NM_001345902	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0.075000	0.517413	-30(GTCTTTAAAAAA,-,0.00)
mm_38802.1	chr4	148159487	148159687	-	1	NA	NA	NA	2	NM_001161851	230903	Mm.220327	NM_173401	ENSMUSG00000029001	Fbxo44	5730411K09|AV001623|FBG3|FBX30|Fbx6a|Fbxo6a	F-box protein 44	protein-coding	0.050000	0.601990	-51(GCGCCTTTAAGG,-,0.00),-50(CGCCTTTAAGGC,-,0.00),-49(GCCTTTAAGGCC,+,0.00),-48(CCTTTAAGGCCC,+,0.00)
mm_15702.1	chr2	163995044	163995244	+	1	NA	NA	NA	-53	NM_018753	54401	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	0.105000	0.696517	-79(CCTTTTCAGGAG,+,0.00)
mm_161193.1	chr13	54055529	54055729	-	1	NA	NA	NA	29	NM_010076	13488	Mm.54161	NM_010076	ENSMUSG00000021478	Drd1	C030036C15Rik|Drd-1|Drd1a|Gpcr15	dopamine receptor D1	protein-coding	0.105000	0.691542	
mm_115841.1	chr13	21287192	21287392	-	1	NA	NA	NA	5394	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.000000	0.462687	-43(CCCCCTTAAAGA,-,0.00),-42(CCCCTTAAAGAC,+,0.00),-40(CCTTAAAGACTG,+,0.00)
mm_141721.1	chr17	34031953	34032153	-	1	NA	NA	NA	241	NM_001205214	20182	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	0.145000	0.776119	
mm_28782.1	chr3	95993566	95993766	-	1	NA	NA	NA	2173	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.005000	0.492537	
mm_31751.1	chr4	63344993	63345193	+	1	NA	NA	NA	537	NM_008768	18405	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding	0.010000	0.432836	
mm_58300.1	chr6	145865468	145865668	-	1	NA	NA	NA	-148	NM_024469	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.105000	0.721393	
mm_111061.1	chr12	80112911	80113111	-	1	NA	NA	NA	2	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.080000	0.616915	
mm_126387.1	chr15	80173599	80173799	+	1	NA	NA	NA	-22	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.175000	0.870647	
mm_120585.1	chr14	69780525	69780725	+	1	NA	NA	NA	13153	NM_020275	21933	Mm.193430	NM_020275	ENSMUSG00000022074	Tnfrsf10b	DR5|KILLER|Ly98|MK|TRAILR2|TRICK2A|TRICK2B|TRICKB	tumor necrosis factor receptor superfamily, member 10b	protein-coding	0.025000	0.507463	
mm_76852.1	chr8	105347858	105348058	-	1	NA	NA	NA	12	NM_177699	234686	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0.090000	0.656716	
mm_164218.1	chr15	84923276	84923476	+	1	NA	NA	NA	-52	NM_016714	18141	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0.100000	0.661692	
mm_102675.1	chr11	65243544	65243744	-	1	NA	NA	NA	26345	NM_145136	214384	Mm.32257	NM_145136	ENSMUSG00000020542	Myocd	BSAC2A|Srfcp	myocardin	protein-coding	0.010000	0.562189	
mm_112827.1	chr13	20813831	20814031	+	1	NA	NA	NA	19818	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.343284	77(TTGTATTTAAGG,-,0.00)
mm_13811.1	chr2	119167709	119167909	+	1	NA	NA	NA	21	NM_177157	320415	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	0.105000	0.686567	
mm_170010.1	chr17	17121270	17121470	+	1	NA	NA	NA	-13	NM_011765	22759	Mm.436633	NM_011765	ENSMUSG00000095990	Zfp97	NGD16-4	zinc finger protein 97	protein-coding	0.015000	0.462687	
mm_32510.1	chr4	108579323	108579523	+	1	NA	NA	NA	-31	NM_011015	18392	Mm.294154	NM_011015	ENSMUSG00000028587	Orc1	AA545195|MmORC1|Orc1l	origin recognition complex, subunit 1	protein-coding	0.070000	0.582090	
mm_146007.1	chr18	69344450	69344650	+	1	NA	NA	NA	58	NM_013685	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.060000	0.557214	-33(CTCTTTATAAGC,-,0.00),-31(CTTTATAAGCCG,+,0.00)
mm_109086.1	chr12	104413776	104413976	+	1	NA	NA	NA	7168	NM_009252	20716	Mm.482074	NM_009252	ENSMUSG00000021091	Serpina3n	Spi2-2|Spi2.2|Spi2/eb.4	serine (or cysteine) peptidase inhibitor, clade A, member 3N	protein-coding	0.000000	0.527363	
mm_87886.1	chr10	61726085	61726285	+	1	NA	NA	NA	5536	NM_153779	71361	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	0.025000	0.532338	
mm_151866.1	chr19	5797623	5797823	-	1	NA	NA	NA	-1742	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.000000	0.442786	
mm_99220.1	chr11	101033290	101033490	+	1	NA	NA	NA	3050	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.010000	0.452736	
mm_84901.1	chr9	79860252	79860452	-	1	NA	NA	NA	66711	NR_040734	74633	Mm.262175	NR_040734	ENSMUSG00000086918	4930429F24Rik	-	RIKEN cDNA 4930429F24 gene	ncRNA	0.015000	0.492537	
mm_10099.1	chr2	3442392	3442592	+	1	NA	NA	NA	18361	NM_001302684	227525	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0.005000	0.412935	29(GCATATATAGAC,+,0.00)
mm_23364.1	chr3	55246975	55247175	+	1	NA	NA	NA	4549	NM_001195538	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.025000	0.472637	
mm_31228.1	chr4	44167502	44167702	+	1	NA	NA	NA	-64	NM_175201	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.150000	0.771144	
mm_107513.1	chr12	40223238	40223438	+	1	NA	NA	NA	-26	NR_045157	629820	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.085000	0.676617	
mm_166830.1	chr7	18686087	18686287	-	1	NA	NA	NA	-195	NM_054058	434540	Mm.479863	NM_054058	ENSMUSG00000063305	Psg20	Cea7|EG434540	pregnancy-specific glycoprotein 20	protein-coding	0.000000	0.477612	
mm_143571.1	chr17	74295340	74295540	-	1	NA	NA	NA	-577	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.110000	0.751244	
mm_59689.1	chr7	28444715	28444915	+	1	NA	NA	NA	3878	NM_001039192	63986	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.040000	0.557214	
mm_54975.1	chr6	48739096	48739296	-	1	NA	NA	NA	149	NM_008376	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.030000	0.587065	
mm_89977.1	chr10	111595799	111595999	+	1	NA	NA	NA	-1626	NR_045344	71321	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.015000	0.517413	
mm_159961.1	chr6	88905837	88906037	+	1	NA	NA	NA	3686	NM_011906	24100	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.025000	0.532338	
mm_22017.1	chr2	167861165	167861365	-	1	NA	NA	NA	-71062	NM_011201	19246	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.005000	0.547264	
mm_168950.1	chr1	27754989	27755189	+	1	NA	NA	NA	1025163	NM_001013750	210962	Mm.214178	NM_001013750	ENSMUSG00000048411	Gm597	-	predicted gene 597	protein-coding	0.040000	0.407960	
mm_102097.1	chr11	52332463	52332663	-	1	NA	NA	NA	-28299	NM_011694	22333	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.010000	0.542289	
mm_108468.1	chr12	83632487	83632687	+	1	NA	NA	NA	353	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.085000	0.731343	
mm_150432.1	chr19	37536547	37536747	+	1	NA	NA	NA	-13771	NM_175353	107371	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0.015000	0.457711	
mm_29104.1	chr3	104818180	104818380	-	1	NA	NA	NA	25	NM_008619	17454	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0.040000	0.631841	
mm_112386.1	chr12	119238098	119238298	-	1	NA	NA	NA	78	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.020000	0.537313	
mm_79300.1	chr9	51853435	51853635	+	1	NA	NA	NA	22350	NR_033560	408028	Mm.393649	NR_033560	ENSMUSG00000074354	Arhgap20os	9230115E21Rik	Rho GTPase activating protein 20, opposite strand	ncRNA	0.000000	0.348259	
mm_166164.1	chr5	20050917	20051117	+	1	NA	NA	NA	143499	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.005000	0.268657	
mm_44408.1	chr5	17849596	17849796	-	1	NA	NA	NA	96	NM_001159557	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.412935	
mm_170878.1	chr2	20899958	20900158	+	1	NA	NA	NA	67663	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.080000	0.537313	39(AACTTTAAATGG,-,0.00)
mm_99759.1	chr11	106755025	106755225	+	1	NA	NA	NA	3899	NM_001033435	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.000000	0.447761	
mm_81020.1	chr9	104355881	104356081	+	1	NA	NA	NA	-18259	NM_207668	56318	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	0.010000	0.512438	
mm_70218.1	chr7	144939731	144939931	-	1	NA	NA	NA	94	NM_007631	12443	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.085000	0.611940	
mm_105668.1	chr11	107454547	107454747	-	1	NA	NA	NA	16073	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.010000	0.477612	
mm_107687.1	chr12	55302664	55302864	+	1	NA	NA	NA	127	NM_025373	66132	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	0.060000	0.517413	
mm_122500.1	chr14	46821854	46822054	-	1	NA	NA	NA	288	NM_022023	63985	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	0.110000	0.681592	
mm_146236.1	chr18	77185944	77186144	+	1	NA	NA	NA	197	NM_013666	225742	Mm.365178	NM_013666	ENSMUSG00000025425	St8sia5	ST8SiaV|Siat8e	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding	0.115000	0.691542	
mm_4023.1	chr1	165763668	165763868	+	1	NA	NA	NA	-12	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.085000	0.656716	
mm_2400.1	chr1	93719555	93719755	+	1	NA	NA	NA	12271	NM_001310761	67026	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	0.010000	0.477612	-34(CTCTATAAAAGG,-,0.00)
mm_27474.1	chr3	53452085	53452285	-	1	NA	NA	NA	11073	NM_172501	212114	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0.015000	0.482587	18(ACCTTTTAAAGG,-,0.00),19(CCTTTTAAAGGA,+,0.00)
mm_21215.1	chr2	155729301	155729501	-	1	NA	NA	NA	74	NM_145537	108687	Mm.273706	NM_145537	ENSMUSG00000038312	Edem2	9530090G24Rik|AI327354	ER degradation enhancer, mannosidase alpha-like 2	protein-coding	0.090000	0.641791	
mm_120371.1	chr14	64587230	64587430	+	1	NA	NA	NA	-785	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA	0.075000	0.696517	
mm_92568.1	chr10	79874556	79874756	-	1	NA	NA	NA	-22	NR_033210	216152	Mm.29678	NM_181681	ENSMUSG00000035835	Plppr3	Lppr3|Prg2	phospholipid phosphatase related 3	protein-coding	0.125000	0.691542	
mm_114000.1	chr13	52583434	52583634	+	1	NA	NA	NA	97	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.090000	0.631841	
mm_164707.1	chr17	52602641	52602841	+	1	NA	NA	NA	32	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.040000	0.567164	
mm_57952.1	chr6	135118146	135118346	-	1	NA	NA	NA	37	NM_053118	93746	Mm.49902	NM_053118	ENSMUSG00000030205	Gprc5d	-	G protein-coupled receptor, family C, group 5, member D	protein-coding	0.030000	0.537313	-93(CTTTTTATAGAC,+,0.00),-45(GCCCATTTGAGG,-,0.00)
mm_155828.1	chrX	100730021	100730221	+	1	NA	NA	NA	-65	NM_001305941	71584	Mm.283495	NM_023608	ENSMUSG00000019359	Gdpd2	9130017L10Rik|Gde3|Obdpf	glycerophosphodiester phosphodiesterase domain containing 2	protein-coding	0.025000	0.611940	
mm_40814.1	chr5	72047033	72047233	+	1	NA	NA	NA	121050	NM_178599	27784	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.025000	0.407960	
mm_53528.1	chr6	136551070	136551270	+	1	NA	NA	NA	32319	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.005000	0.432836	
mm_96647.1	chr11	69340654	69340854	+	1	NA	NA	NA	-15	NR_027827	80515	Mm.5324	NM_020591	ENSMUSG00000043419	Chd3os	2310043C11Rik|A030009H04Rik|AA589459|AB041807|MNCb-2875|RNF21	chromodomain helicase DNA binding protein 3, opposite strand	ncRNA	0.190000	0.776119	
mm_109842.1	chr12	4569441	4569641	-	1	NA	NA	NA	-23467	NM_001198969	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.000000	0.422886	
mm_118935.1	chr14	27141762	27141962	+	1	NA	NA	NA	-2131	NM_001289686	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.015000	0.552239	
mm_103798.1	chr11	82890418	82890618	-	1	NA	NA	NA	106	NR_102719	19364	Mm.9286	NM_011235	ENSMUSG00000018841	Rad51d	R51H3|Rad51l3|TRAD|Trad-d5	RAD51 paralog D	protein-coding	0.055000	0.611940	
mm_38650.1	chr4	143276001	143276201	-	1	NA	NA	NA	23463	NM_010329	14726	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding	0.010000	0.492537	57(GGCCTTAAAAAC,-,0.00),59(CCTTAAAAACAG,+,0.00)
mm_93768.1	chr10	120201427	120201627	-	1	NA	NA	NA	10	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.135000	0.731343	
mm_44138.1	chr5	150142540	150142740	+	1	NA	NA	NA	-117290	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.020000	0.492537	
mm_151049.1	chr19	47025161	47025361	+	1	NA	NA	NA	-10072	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.025000	0.447761	
mm_4947.1	chr1	191193950	191194150	+	1	NA	NA	NA	-10717	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.025000	0.452736	
mm_75405.1	chr8	46210299	46210499	-	1	NA	NA	NA	610	NM_007450	11739	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	0.035000	0.477612	
mm_11706.1	chr2	36136839	36137039	+	1	NA	NA	NA	-235	NR_027515	67889	Mm.205937	NM_026434	ENSMUSG00000026889	Rbm18	2010004P11Rik|AU015530	RNA binding motif protein 18	protein-coding	0.040000	0.517413	
mm_140829.1	chr17	23644951	23645151	-	1	NA	NA	NA	218	NM_001033339	240047	Mm.235343	NM_001033339	ENSMUSG00000023903	Mmp25	F730048C11Rik|Leukolysin|MMP20|MT6-MMP	matrix metallopeptidase 25	protein-coding	0.045000	0.631841	
mm_47814.1	chr5	134184333	134184533	-	1	NA	NA	NA	395	NM_053266	114674	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0.135000	0.696517	
mm_93604.1	chr10	117233948	117234148	-	1	NA	NA	NA	4633	NM_029906	77397	Mm.118350	NM_029906	ENSMUSG00000020177	9530003J23Rik	Lyzf1	RIKEN cDNA 9530003J23 gene	protein-coding	0.010000	0.402985	
mm_105924.1	chr11	115062040	115062240	-	1	NA	NA	NA	-101	NM_172050	217306	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.015000	0.447761	
mm_155312.1	chrX	61709404	61709604	+	1	NA	NA	NA	-112	NM_001018087	434784	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Sirh7	leucine zipper, down-regulated in cancer 1	protein-coding	0.045000	0.641791	
mm_81355.1	chr9	108650017	108650217	+	1	NA	NA	NA	-737	NM_011790	23807	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.030000	0.457711	
mm_41216.1	chr5	88583377	88583577	+	1	NA	NA	NA	-36	NM_001289777	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.010000	0.497512	
mm_82654.1	chr9	22051873	22052073	-	1	NA	NA	NA	50	NM_010487	15571	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	protein-coding	0.100000	0.701493	-88(GCCTCTATAAAG,-,0.00),-86(CTCTATAAAGGG,+,0.00),-86(CTCTATAAAGGG,-,0.00)
mm_31485.1	chr4	52596173	52596373	+	1	NA	NA	NA	-1	NM_026652	68274	Mm.85045	NM_026652	ENSMUSG00000028314	Toporsl	4930547C10Rik	topoisomerase I binding, arginine/serine-rich like	protein-coding	0.010000	0.407960	
mm_149124.1	chr19	8990191	8990391	+	1	NA	NA	NA	1007	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.040000	0.641791	
mm_19959.1	chr2	117342858	117343058	-	1	NA	NA	NA	-81	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.095000	0.616915	
mm_149446.1	chr19	11484288	11484488	+	1	NA	NA	NA	-7650	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.010000	0.402985	
mm_83658.1	chr9	49529430	49529630	-	1	NA	NA	NA	11242	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.015000	0.417910	
mm_166217.1	chr5	63164476	63164676	+	1	NA	NA	NA	350753	NM_001170705	100322896	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0.010000	0.353234	
mm_138110.1	chr17	34122600	34122800	+	1	NA	NA	NA	-93	NM_001204973	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.115000	0.756219	
mm_130250.1	chr15	96641419	96641619	-	1	NA	NA	NA	443	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.075000	0.626866	20(GCTTATAAACTG,+,0.00)
mm_57024.1	chr6	122282693	122282893	-	1	NA	NA	NA	40	NM_016970	50928	Mm.20434	NM_016970	ENSMUSG00000030114	Klrg1	2F1-Ag|MAFA|MAFA-L	killer cell lectin-like receptor subfamily G, member 1	protein-coding	0.010000	0.527363	
mm_15644.1	chr2	163062265	163062465	+	1	NA	NA	NA	-5725	NR_105970	102465607		NR_105970	ENSMUSG00000099091	Mir7003	Gm27340|mmu-mir-7003	microRNA 7003	ncRNA	0.020000	0.477612	
mm_69686.1	chr7	139989315	139989515	-	1	NA	NA	NA	-2541	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.010000	0.562189	
mm_91289.1	chr10	24836073	24836273	-	1	NA	NA	NA	22	NM_134005	209558	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	0.020000	0.477612	
mm_100677.1	chr11	3452207	3452407	-	1	NA	NA	NA	-130	NR_028317	71523	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	0.105000	0.636816	
mm_27822.1	chr3	79076495	79076695	-	1	NA	NA	NA	68292	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.462687	
mm_103478.1	chr11	76494772	76494972	-	1	NA	NA	NA	-377	NM_001346670	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.105000	0.691542	
mm_96461.1	chr11	67586656	67586856	+	1	NA	NA	NA	256	NM_001109657	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.010000	0.577114	
mm_64266.1	chr7	141751300	141751500	+	1	NA	NA	NA	-37611	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.010000	0.497512	
mm_7006.1	chr1	86487250	86487450	-	1	NA	NA	NA	-39386	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.085000	0.641791	
mm_9229.1	chr1	171247009	171247209	-	1	NA	NA	NA	13	NM_153064	226646	Mm.21669	NM_153064	ENSMUSG00000013593	Ndufs2	CI-49kD	NADH dehydrogenase (ubiquinone) Fe-S protein 2	protein-coding	0.090000	0.701493	
mm_126874.1	chr15	89384780	89384980	+	1	NA	NA	NA	-2011	NM_001160178	546648	Mm.478787	NM_001160178	ENSMUSG00000091680	Klhdc7b	EG546648|Gm306	kelch domain containing 7B	protein-coding	0.020000	0.611940	
mm_39315.1	chr5	8065027	8065227	+	1	NA	NA	NA	8585	NM_001080974	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.010000	0.532338	
mm_99957.1	chr11	113619232	113619432	+	1	NA	NA	NA	-149	NM_009217	20606		NM_009217	ENSMUSG00000047904	Sstr2	SRIF-1|SS2R|SSTR-2|Smstr-2|Smstr2|sst2	somatostatin receptor 2	protein-coding	0.110000	0.736318	
mm_8364.1	chr1	150466065	150466265	-	1	NA	NA	NA	0	NM_021400	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.005000	0.363184	-35(TGCTATATAAGA,-,0.00)
mm_171721.1	chr4	86856157	86856357	-	1	NA	NA	NA	1110	NM_009096	20104	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	0.030000	0.522388	
mm_76349.1	chr8	84746136	84746336	-	1	NA	NA	NA	28133	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.005000	0.522388	
mm_40867.1	chr5	73946806	73947006	+	1	NA	NA	NA	121505	NM_177561	69727	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.010000	0.437811	
mm_52037.1	chr6	96253712	96253912	+	1	NA	NA	NA	-87607	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo	0.000000	0.462687	
mm_164270.1	chr15	101284077	101284277	+	1	NA	NA	NA	-124	NM_026566	68118	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0.090000	0.592040	
mm_56043.1	chr6	86733231	86733431	-	1	NA	NA	NA	47	NM_011818	23885	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	0.140000	0.731343	
mm_82757.1	chr9	26860807	26861007	-	1	NA	NA	NA	-84	NM_001113323	70893	Mm.78118	NM_001113323	ENSMUSG00000031966	Glb1l3	4921509F24Rik	galactosidase, beta 1 like 3	protein-coding	0.015000	0.527363	
mm_110248.1	chr12	31499452	31499652	-	1	NA	NA	NA	64	NM_134048	104836	Mm.273270	NM_134048	ENSMUSG00000020659	Cbll1	AI467391|Hakai|c-Cbl-like	Casitas B-lineage lymphoma-like 1	protein-coding	0.100000	0.661692	
mm_52689.1	chr6	118162973	118163173	+	1	NA	NA	NA	-23933	NM_030165	78752	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0.015000	0.502488	
mm_150164.1	chr19	32389130	32389330	+	1	NA	NA	NA	14	NR_033198	67188	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	0.105000	0.711443	
mm_148310.1	chr18	83753307	83753507	-	1	NA	NA	NA	333155	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.005000	0.388060	
mm_119019.1	chr14	30008947	30009147	+	1	NA	NA	NA	47	NM_001136240	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.120000	0.741294	
mm_13994.1	chr2	121901104	121901304	+	1	NA	NA	NA	33499	NM_001205371	319996	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	0.025000	0.437811	
mm_130964.1	chr15	103315907	103316107	-	1	NA	NA	NA	-5569	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.010000	0.601990	
mm_63043.1	chr7	121392176	121392376	+	1	NA	NA	NA	-20	NM_001081327	195646	Mm.247449	NM_177575	ENSMUSG00000046321	Hs3st2	6430516N12Rik|A830061E14Rik|AW491345	heparan sulfate (glucosamine) 3-O-sulfotransferase 2	protein-coding	0.150000	0.746269	-34(CCTTAAATAGAG,+,0.00)
mm_84735.1	chr9	75099074	75099274	-	1	NA	NA	NA	27968	NM_010864	17918	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	0.020000	0.442786	
mm_139778.1	chr17	65782614	65782814	+	1	NA	NA	NA	-641	NM_001114131	70351	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0.110000	0.711443	
mm_55831.1	chr6	83124772	83124972	-	1	NA	NA	NA	157	NM_023547	70020	Mm.27814	NM_023547	ENSMUSG00000030034	Ino80b	2510009I23Rik|HMG1YL4|Hmga1l4|Papa1|Znhit4	INO80 complex subunit B	protein-coding	0.050000	0.577114	
mm_35506.1	chr4	41093371	41093571	-	1	NA	NA	NA	4712	NM_016689	11828	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	0.015000	0.597015	
mm_18426.1	chr2	60752865	60753065	-	1	NA	NA	NA	-30362	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.015000	0.378109	
mm_167560.1	chr9	37609003	37609203	+	1	NA	NA	NA	4617	NM_011449	20686	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	0.000000	0.348259	28(TCTTTTATATAC,+,0.00)
mm_32857.1	chr4	118359953	118360153	+	1	NA	NA	NA	54	NR_003946	68180	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	0.130000	0.751244	
mm_845.1	chr1	51987045	51987245	+	1	NA	NA	NA	-3	NM_001308266	20849	Mm.1550	NM_011487	ENSMUSG00000062939	Stat4	-	signal transducer and activator of transcription 4	protein-coding	0.015000	0.517413	
mm_4862.1	chr1	187662252	187662452	+	1	NA	NA	NA	53346	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.020000	0.557214	
mm_99087.1	chr11	99533365	99533565	+	1	NA	NA	NA	9693	NM_001039666	406221	Mm.422372	NM_001039666	ENSMUSG00000059169	Krt40	CK-40|K40	keratin 40	protein-coding	0.010000	0.522388	-34(CACTATAAAAGG,-,0.00)
mm_51073.1	chr6	66896335	66896535	+	1	NA	NA	NA	38	NM_001177556	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.150000	0.786070	
mm_98819.1	chr11	97315755	97315955	+	1	NA	NA	NA	139	NM_025927	67036	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.085000	0.641791	
mm_6933.1	chr1	85590992	85591192	-	1	NA	NA	NA	7718	NM_030194	109032	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|ENSMUSG00000075603|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.010000	0.383085	
mm_77393.1	chr8	120228226	120228426	-	1	NA	NA	NA	-96	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.045000	0.646766	
mm_145558.1	chr18	60812121	60812321	+	1	NA	NA	NA	145	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.020000	0.582090	
mm_80447.1	chr9	77976748	77976948	+	1	NA	NA	NA	59483	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.035000	0.492537	
mm_72531.1	chr8	83989465	83989665	+	1	NA	NA	NA	-8107	NM_001081415	666704	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.025000	0.487562	-28(TCTTTTAAACTC,+,0.00)
mm_126963.1	chr15	92486586	92486786	+	1	NA	NA	NA	89876	NM_001164593	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding	0.025000	0.407960	
mm_27677.1	chr3	65929266	65929466	-	1	NA	NA	NA	28859	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.020000	0.552239	
mm_169630.1	chr15	44281772	44281972	+	1	NA	NA	NA	85737	NM_013696	22045	Mm.309350	NM_013696	ENSMUSG00000038760	Trhr	TRH-R1	thyrotropin releasing hormone receptor	protein-coding	0.040000	0.447761	-24(TTCCATAAAAAC,-,0.00)
mm_131590.1	chr16	18776748	18776948	+	1	NA	NA	NA	1	NM_013805	12741	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	0.025000	0.567164	
mm_22746.1	chr3	19957120	19957320	+	1	NA	NA	NA	166	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.010000	0.348259	
mm_162797.1	chr10	76726122	76726322	-	1	NA	NA	NA	-178	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.015000	0.502488	
mm_72565.1	chr8	84125935	84126135	+	1	NA	NA	NA	46	NM_001013384	244550	Mm.334654	NM_001013384	ENSMUSG00000012889	Podnl1	5832418A03Rik|Gm506	podocan-like 1	protein-coding	0.025000	0.582090	
mm_98720.1	chr11	96323154	96323354	+	1	NA	NA	NA	128	NM_001079869	15410	Mm.342481	NM_010458	ENSMUSG00000048763	Hoxb3	Hox-2.7	homeobox B3	protein-coding	0.030000	0.407960	
mm_116184.1	chr13	30974023	30974223	-	1	NA	NA	NA	-76	NM_025588	66482	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.100000	0.641791	
mm_110332.1	chr12	35534519	35534719	-	1	NA	NA	NA	370	NM_013464	11622	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0.150000	0.761194	
mm_130205.1	chr15	95528058	95528258	-	1	NA	NA	NA	94	NM_001289653	54003	Mm.3959	NM_016743	ENSMUSG00000022454	Nell2	A330108N19Rik|R75516|mel91	NEL-like 2	protein-coding	0.160000	0.786070	
mm_159262.1	chr2	155440511	155440711	-	1	NA	NA	NA	172	NM_001242558	56406	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	0.000000	0.283582	69(GGCCAGAAAAGG,-,0.00)
mm_11443.1	chr2	32047288	32047488	+	1	NA	NA	NA	-3558	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	0.015000	0.512438	
mm_7553.1	chr1	124605648	124605848	-	1	NA	NA	NA	-560189	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.020000	0.462687	
mm_163637.1	chr13	59770428	59770628	+	1	NA	NA	NA	562	NR_015349	13996	Mm.490435	NR_015349	ENSMUSG00000089875	Etohd2	AW491659	ethanol decreased 2	ncRNA	0.035000	0.517413	
mm_54788.1	chr6	41558265	41558465	-	1	NA	NA	NA	36589	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.000000	0.472637	
mm_80774.1	chr9	95561461	95561661	+	1	NA	NA	NA	1744	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.015000	0.383085	
mm_53956.1	chr6	5398246	5398446	-	1	NA	NA	NA	14960	NM_023048	65255	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0.040000	0.552239	
mm_158275.1	chrX	111463021	111463221	-	1	NA	NA	NA	74838	NM_025949	67071	Mm.37617	NM_025949	ENSMUSG00000025665	Rps6ka6	2610524K04Rik|RSK4|S6K-alpha-6	ribosomal protein S6 kinase polypeptide 6	protein-coding	0.095000	0.726368	
mm_58742.1	chr7	13037922	13038122	+	1	NA	NA	NA	-44	NM_145578	22192	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0.100000	0.711443	
mm_127142.1	chr15	98398319	98398519	+	1	NA	NA	NA	-26	NR_015496	73302	Mm.272760	NR_015496	ENSMUSG00000099353	1700031M16Rik	4930413L20Rik	RIKEN cDNA 1700031M16 gene	ncRNA	0.020000	0.547264	
mm_88652.1	chr10	79994752	79994952	+	1	NA	NA	NA	-2756	NM_001347081	27403	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.010000	0.567164	
mm_97739.1	chr11	80444803	80445003	+	1	NA	NA	NA	16288	NM_178616	69077	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	0.000000	0.378109	
mm_128319.1	chr15	37984911	37985111	-	1	NA	NA	NA	-23956	NM_199476	382985	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.010000	0.313433	
mm_69384.1	chr7	131329378	131329578	-	1	NA	NA	NA	21	NM_027037	69318	Mm.233840	NM_027037	ENSMUSG00000030858	1700007K09Rik	-	RIKEN cDNA 1700007K09 gene	protein-coding	0.015000	0.432836	
mm_37864.1	chr4	132329409	132329609	-	1	NA	NA	NA	29	NM_027925	71787	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	0.120000	0.731343	
mm_31462.1	chr4	49059352	49059552	+	1	NA	NA	NA	-10	NM_178756	272031	Mm.299460	NM_178756	ENSMUSG00000063446	Plppr1	E130309F12Rik|Lppr1|PRG-3|mKIAA4247	phospholipid phosphatase related 1	protein-coding	0.115000	0.676617	
mm_21211.1	chr2	155668345	155668545	-	1	NA	NA	NA	23939	NM_019828	56407	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	0.005000	0.368159	
mm_63955.1	chr7	139907301	139907501	+	1	NA	NA	NA	12705	NM_177261	76484	Mm.44442	NM_177261	ENSMUSG00000066129	Kndc1	2410012C07Rik|B830014K08Rik|VKIND|very-kind	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding	0.000000	0.492537	
mm_93633.1	chr10	117282150	117282350	-	1	NA	NA	NA	22	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.005000	0.507463	-52(GCTTAAATAGCA,+,0.00)
mm_121234.1	chr14	103055798	103055998	+	1	NA	NA	NA	8886	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.005000	0.507463	
mm_110116.1	chr12	26443778	26443978	-	1	NA	NA	NA	12574	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.005000	0.412935	
mm_16045.1	chr2	167721644	167721844	+	1	NA	NA	NA	30567	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.010000	0.626866	
mm_67089.1	chr7	68353109	68353309	-	1	NA	NA	NA	-64215	NR_046208	71244	Mm.410787	NR_046208	ENSMUSG00000108924	4933436H12Rik	-	RIKEN cDNA 4933436H12 gene	ncRNA	0.055000	0.477612	
mm_60586.1	chr7	44482665	44482865	+	1	NA	NA	NA	-1752	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.532338	5(CCCTTTCTGGGC,+,0.00)
mm_114744.1	chr13	83832141	83832341	+	1	NA	NA	NA	-58967	NR_036594	72677	Mm.245636	NR_036594	ENSMUSG00000100891	2810049E08Rik	-	RIKEN cDNA 2810049E08 gene	ncRNA	0.030000	0.472637	
mm_123964.1	chr14	74947700	74947900	-	1	NA	NA	NA	77	NM_001252132	380916	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.140000	0.751244	
mm_92653.1	chr10	80399440	80399640	-	1	NA	NA	NA	-9	NM_001306143	17192	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.110000	0.716418	
mm_62250.1	chr7	99267394	99267594	+	1	NA	NA	NA	47	NM_001048167	17760	Mm.154087	NM_010837	ENSMUSG00000055407	Map6	2810411E12Rik|Map-6|Mtap6|STOP	microtubule-associated protein 6	protein-coding	0.060000	0.587065	
mm_52597.1	chr6	117169902	117170102	+	1	NA	NA	NA	1467	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.025000	0.388060	
mm_67667.1	chr7	86775873	86776073	-	1	NA	NA	NA	-109	NM_001159706	53320	Mm.269137	NM_016770	ENSMUSG00000001773	Folh1	GCP2|mopsm	folate hydrolase 1	protein-coding	0.010000	0.422886	
mm_6435.1	chr1	73986698	73986898	-	1	NA	NA	NA	-122332	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.015000	0.462687	
mm_129919.1	chr15	84217086	84217286	-	1	NA	NA	NA	-14857	NM_133167	170736	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.030000	0.492537	
mm_45736.1	chr5	86468959	86469159	-	1	NA	NA	NA	-69	NM_001033233	194597	Mm.249106	NM_001033233	ENSMUSG00000072845	Tmprss11a	Gm7	transmembrane protease, serine 11a	protein-coding	0.020000	0.432836	
mm_97852.1	chr11	83069486	83069686	+	1	NA	NA	NA	4474	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.020000	0.457711	
mm_56809.1	chr6	116665857	116666057	-	1	NA	NA	NA	7879	NM_178045	213391	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.005000	0.422886	-98(GTCCTTAAAAGA,-,0.00),-97(TCCTTAAAAGAC,+,0.00),-96(CCTTAAAAGACC,+,0.00),72(GCCTCTAAAAAA,-,0.00)
mm_6226.1	chr1	66935250	66935450	-	1	NA	NA	NA	16	NM_001113387	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.015000	0.497512	
mm_113423.1	chr13	34046707	34046907	+	1	NA	NA	NA	9166	NM_026512	68021	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0.035000	0.492537	
mm_158567.1	chrX	150459043	150459243	-	1	NA	NA	NA	7	NM_001164683	382245	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding	0.095000	0.552239	
mm_160578.1	chr9	58823204	58823404	+	1	NA	NA	NA	-208	NM_001081192	330953	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0.145000	0.791045	
mm_64860.1	chr7	13037727	13037927	-	1	NA	NA	NA	151	NM_145578	22192	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0.175000	0.840796	
mm_109657.1	chr12	113014328	113014528	+	1	NA	NA	NA	-80	NM_001291445	217893	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.205000	0.855721	
mm_10265.1	chr2	9693628	9693828	+	1	NA	NA	NA	184872	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.005000	0.343284	
mm_125984.1	chr15	76343431	76343631	+	1	NA	NA	NA	8	NM_025567	66445	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	0.120000	0.721393	
mm_153177.1	chr19	34493791	34493991	-	1	NA	NA	NA	-18756	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.015000	0.378109	
mm_55237.1	chr6	52245711	52245911	-	1	NA	NA	NA	-1	NM_010450	15396	Mm.26954	NM_010450	ENSMUSG00000038210	Hoxa11	Hox-1.9|Hoxa-11	homeobox A11	protein-coding	0.050000	0.527363	
mm_169583.1	chr1	52431830	52432030	-	1	NA	NA	NA	68518	NM_008667	17936	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	0.035000	0.497512	
mm_168379.1	chr11	22286922	22287122	-	1	NA	NA	NA	-227	NM_001252515	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0.115000	0.731343	
mm_142882.1	chr17	51826595	51826795	-	1	NA	NA	NA	-107	NM_001163631	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.015000	0.587065	
mm_142836.1	chr17	51790103	51790303	-	1	NA	NA	NA	21851	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.010000	0.383085	
mm_84705.1	chr9	72721291	72721491	-	1	NA	NA	NA	59044	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.045000	0.552239	
mm_71426.1	chr8	46491034	46491234	+	1	NA	NA	NA	168	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.015000	0.532338	
mm_63500.1	chr7	127800615	127800815	+	1	NA	NA	NA	106	NM_001040684	101502	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	0.020000	0.557214	
mm_161028.1	chr12	4274737	4274937	-	1	NA	NA	NA	-40543	NM_134046	52504	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.025000	0.582090	
mm_65824.1	chr7	29177091	29177291	-	1	NA	NA	NA	3482	NM_026545	57296	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	0.015000	0.507463	
mm_147291.1	chr18	39490348	39490548	-	1	NA	NA	NA	-3203	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.090000	0.711443	
mm_33862.1	chr4	135920666	135920866	+	1	NA	NA	NA	40	NM_024243	71665	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	0.060000	0.661692	
mm_134167.1	chr16	10796176	10796376	-	1	NA	NA	NA	547	NM_013637	19118	Mm.42733	NM_013637	ENSMUSG00000022501	Prm1	Prm-1	protamine 1	protein-coding	0.010000	0.502488	
mm_170240.1	chr17	89935688	89935888	+	1	NA	NA	NA	152580	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.050000	0.502488	-41(CTCCTTAAGAGG,-,0.00)
mm_6468.1	chr1	74036130	74036330	-	1	NA	NA	NA	88217	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.005000	0.527363	
mm_80973.1	chr9	103112022	103112222	+	1	NA	NA	NA	48	NM_173781	270192	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.070000	0.681592	
mm_77567.1	chr8	123429348	123429548	-	1	NA	NA	NA	-13508	NM_001253784	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.020000	0.472637	-83(CCTTATAGAGGA,+,0.00)
mm_82906.1	chr9	32924400	32924600	-	1	NA	NA	NA	4466	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.020000	0.472637	
mm_19735.1	chr2	104502438	104502638	-	1	NA	NA	NA	-8049	NM_001145824	15259	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.010000	0.477612	
mm_18834.1	chr2	74716047	74716247	-	1	NA	NA	NA	-17	NR_027899	73429	Mm.443313	NR_027899		Hoxd3os1	1700064D17Rik|1700109F18Rik	homeobox D3, opposite strand 1	ncRNA	0.040000	0.562189	
mm_90508.1	chr10	128040194	128040394	+	1	NA	NA	NA	4948	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.010000	0.477612	-9(TGGTTTAAAAGA,-,0.00)
mm_54746.1	chr6	41032890	41033090	-	1	NA	NA	NA	2519	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.010000	0.487562	
mm_23953.1	chr3	84912377	84912577	+	1	NA	NA	NA	-39734	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.025000	0.527363	
mm_52944.1	chr6	122952541	122952741	+	1	NA	NA	NA	-3	NM_153197	73149	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.020000	0.487562	
mm_75826.1	chr8	70488392	70488592	-	1	NA	NA	NA	-1134	NM_182991	67937	Mm.23002	NM_182991	ENSMUSG00000035964	Tmem59l	5330410G16Rik	transmembrane protein 59-like	protein-coding	0.115000	0.741294	
mm_128668.1	chr15	60187024	60187224	-	1	NA	NA	NA	-170506	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.005000	0.412935	
mm_4596.1	chr1	178337879	178338079	+	1	NA	NA	NA	-195	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.105000	0.681592	
mm_121706.1	chr14	15438773	15438973	-	1	NA	NA	NA	114	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding	0.105000	0.686567	
mm_105059.1	chr11	100715265	100715465	-	1	NA	NA	NA	1515	NM_029307	75482	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.020000	0.482587	
mm_31120.1	chr4	42952715	42952915	+	1	NA	NA	NA	-279	NM_019874	56323	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.025000	0.611940	
mm_140095.1	chr17	78200149	78200349	+	1	NA	NA	NA	1	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.125000	0.756219	
mm_105665.1	chr11	107417265	107417465	-	1	NA	NA	NA	53355	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.025000	0.512438	
mm_43830.1	chr5	142972150	142972350	+	1	NA	NA	NA	11895	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.015000	0.592040	
mm_39114.1	chr4	154928493	154928693	-	1	NA	NA	NA	-516	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.035000	0.507463	
mm_31404.1	chr4	48047226	48047426	+	1	NA	NA	NA	2021	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.065000	0.592040	
mm_106489.1	chr11	120235955	120236155	-	1	NA	NA	NA	3108	NM_198423	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.085000	0.696517	
mm_81737.1	chr9	113792737	113792937	+	1	NA	NA	NA	-493	NM_001286603	76499	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.025000	0.462687	
mm_84220.1	chr9	61925318	61925518	-	1	NA	NA	NA	-10908	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.010000	0.472637	
mm_145679.1	chr18	61587385	61587585	+	1	NA	NA	NA	31903	NM_146087	93687	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0.015000	0.378109	
mm_54139.1	chr6	21858037	21858237	-	1	NA	NA	NA	-5622	NM_173007	269831	Mm.21950	NM_173007	ENSMUSG00000029669	Tspan12	9030619E17|AI426782|AI663988|AW111457|Tm4sf12	tetraspanin 12	protein-coding	0.025000	0.557214	
mm_58741.1	chr7	13037587	13037787	+	1	NA	NA	NA	-60	NM_001243968	22192	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0.115000	0.721393	
mm_91336.1	chr10	25621462	25621662	-	1	NA	NA	NA	85176	NR_136909	102640597	Mm.412041	NR_136909	ENSMUSG00000101537	Gm29571	-	predicted gene 29571	ncRNA	0.025000	0.472637	
mm_37352.1	chr4	120134540	120134740	-	1	NA	NA	NA	-26566	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.005000	0.477612	
mm_16945.1	chr2	15049197	15049397	-	1	NA	NA	NA	15	NM_001165942	74455	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	0.055000	0.547264	
mm_135794.1	chr16	57196562	57196762	-	1	NA	NA	NA	-29330	NM_023175	52633	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.010000	0.412935	
mm_136707.1	chr17	7925864	7926064	+	1	NA	NA	NA	-36	NM_145968	72536	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik	T cell activation Rho GTPase activating protein	protein-coding	0.025000	0.562189	
mm_156493.1	chrX	144336049	144336249	+	1	NA	NA	NA	18183	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.020000	0.517413	
mm_154572.1	chrX	7067406	7067606	+	1	NA	NA	NA	-9	NM_009651	11643	Mm.1498	NM_009651	ENSMUSG00000050089	Akap4	AKAP-4|AKAP82|Fsc1|PRKA4|mAKAP82|p82	A kinase (PRKA) anchor protein 4	protein-coding	0.005000	0.427861	
mm_67614.1	chr7	83884202	83884402	-	1	NA	NA	NA	39	NM_030705	80889	Mm.272998	NM_030705	ENSMUSG00000070462	Mesdc1	AW061151	mesoderm development candidate 1	protein-coding	0.130000	0.681592	
mm_40221.1	chr5	37241997	37242197	+	1	NA	NA	NA	39	NM_001136058	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.160000	0.781095	
mm_144247.1	chr18	10782214	10782414	+	1	NA	NA	NA	662	NR_029547	387151		NR_029547	ENSMUSG00000065399	Mir133a-1	Mirn133|Mirn133a-1|mir-133a-1	microRNA 133a-1	ncRNA	0.005000	0.427861	
mm_87559.1	chr10	56106810	56107010	+	1	NA	NA	NA	-7	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding	0.040000	0.537313	
mm_86806.1	chr10	20326861	20327061	+	1	NA	NA	NA	14492	NM_001025393	72567	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0.000000	0.298507	
mm_74217.1	chr8	123982927	123983127	+	1	NA	NA	NA	95	NM_019552	56199	Mm.274243	NM_019552	ENSMUSG00000031974	Abcb10	Abc-me|Abcb12	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding	0.130000	0.731343	
mm_80666.1	chr9	90113850	90114050	+	1	NA	NA	NA	870	NM_001039147	21761	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.095000	0.676617	
mm_49417.1	chr6	28888476	28888676	+	1	NA	NA	NA	-56829	NM_138682	192198	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.020000	0.467662	
mm_117706.1	chr13	95052900	95053100	-	1	NA	NA	NA	76656	NM_172590	218460	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.040000	0.422886	
mm_70760.1	chr8	21528932	21529132	+	1	NA	NA	NA	2	NM_001177521	100041890	Mm.423382	NM_001177521	ENSMUSG00000094818	Defa32	ENSMUSG00000065957|Gm15308|OTTMUSG00000019860	defensin, alpha, 32	protein-coding	0.005000	0.512438	-34(CCCTATAAATGT,-,0.00)
mm_54218.1	chr6	25809125	25809325	-	1	NA	NA	NA	1	NM_133931	101185	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	0.090000	0.597015	
mm_44468.1	chr5	23386947	23387147	-	1	NA	NA	NA	47306	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.025000	0.542289	
mm_86927.1	chr10	24149356	24149556	+	1	NA	NA	NA	139	NM_016797	53331	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.080000	0.736318	
mm_166099.1	chr4	143612021	143612221	-	1	NA	NA	NA	-2882	NM_001126324	279185	Mm.441604	NM_001126324	ENSMUSG00000066688	Gm13083	OTTMUSG00000010327	predicted gene 13083	protein-coding	0.035000	0.472637	
mm_64289.1	chr7	141857428	141857628	+	1	NA	NA	NA	18456	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.025000	0.547264	
mm_81344.1	chr9	108559760	108559960	+	1	NA	NA	NA	-641	NM_011830	23918	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine 5'-phosphate dehydrogenase 2	protein-coding	0.010000	0.353234	
mm_22258.1	chr2	177840249	177840449	-	1	NA	NA	NA	-13	NM_001024849	329575	Mm.425123	NM_001024849	ENSMUSG00000095362	Gm14325	OTTMUSG00000016325	predicted gene 14325	protein-coding	0.020000	0.502488	
mm_4798.1	chr1	185204074	185204274	+	1	NA	NA	NA	6	NM_001163754	98732	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	0.080000	0.696517	
mm_17700.1	chr2	32379351	32379551	-	1	NA	NA	NA	2464	NM_198001	73737	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0.035000	0.597015	
mm_57348.1	chr6	124756403	124756603	-	1	NA	NA	NA	-16	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.205000	0.875622	
mm_126782.1	chr15	86194804	86195004	+	1	NA	NA	NA	-8763	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.100000	0.676617	
mm_146931.1	chr18	32035078	32035278	-	1	NA	NA	NA	1753	NM_032394	17922	Mm.440013	NM_032394	ENSMUSG00000024388	Myo7b	-	myosin VIIB	protein-coding	0.015000	0.482587	
mm_167112.1	chr7	114667839	114668039	+	1	NA	NA	NA	-31582	NM_001305616	12310	Mm.4361	NM_007587	ENSMUSG00000030669	Calca	CA|CGRP-1|CGRP1|Calc|Calc1|Cgrp|Ct|Ctn	calcitonin/calcitonin-related polypeptide, alpha	protein-coding	0.000000	0.527363	
mm_88374.1	chr10	76253757	76253957	+	1	NA	NA	NA	21	NM_009115	20203	Mm.235998	NM_009115	ENSMUSG00000033208	S100b	AI850290|Bpb	S100 protein, beta polypeptide, neural	protein-coding	0.010000	0.567164	
mm_35682.1	chr4	43669073	43669273	-	1	NA	NA	NA	202	NM_001085508	242409	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	0.060000	0.616915	
mm_44722.1	chr5	30960178	30960378	-	1	NA	NA	NA	49	NM_001294302	50907	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0.115000	0.661692	
mm_100471.1	chr11	119999016	119999216	+	1	NA	NA	NA	-15651	NR_037225	100526518		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0.030000	0.631841	
mm_61382.1	chr7	72306794	72306994	+	1	NA	NA	NA	-299	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.045000	0.482587	
mm_57897.1	chr6	131379331	131379531	-	1	NA	NA	NA	9019	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.050000	0.512438	
mm_128335.1	chr15	38455154	38455354	-	1	NA	NA	NA	35293	NR_105916	102465574		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.015000	0.497512	
mm_112689.1	chr13	16030996	16031196	+	1	NA	NA	NA	19245	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.278607	55(TTCTTTAAAAGA,-,0.00),56(TCTTTAAAAGAA,+,0.00)
mm_167108.1	chr7	113621502	113621702	+	1	NA	NA	NA	-56615	NR_126544	69295	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0.015000	0.427861	64(CCATTAATATCC,+,0.00)
mm_97659.1	chr11	79578756	79578956	+	1	NA	NA	NA	-12356	NM_175543	268451	Mm.130656	NM_175543	ENSMUSG00000017639	Rab11fip4	A730072L08Rik|RAB11-FIP4|mKIAA1821	RAB11 family interacting protein 4 (class II)	protein-coding	0.010000	0.378109	
mm_69709.1	chr7	140102273	140102473	-	1	NA	NA	NA	68	NM_001286217	69064	Mm.41915	NM_026928	ENSMUSG00000025466	Fuom	Fucu|Le51	fucose mutarotase	protein-coding	0.080000	0.651741	
mm_32774.1	chr4	116699168	116699368	+	1	NA	NA	NA	9117	NM_025962	67096	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0.005000	0.462687	
mm_23750.1	chr3	69548863	69549063	+	1	NA	NA	NA	49997	NM_020026	26879	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0.035000	0.522388	
mm_26739.1	chr3	6451570	6451770	-	1	NA	NA	NA	168773	NM_027048	69347	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	0.005000	0.398010	
mm_109043.1	chr12	104241158	104241358	+	1	NA	NA	NA	-6638	NR_033450	546546	Mm.390522	NM_001034870		Serpina3h	6C28|Spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3H	pseudo	0.020000	0.442786	-62(CCCTCTTTATGG,-,0.00),-60(CTCTTTATGGCA,+,0.00)
mm_55309.1	chr6	54972515	54972715	-	1	NA	NA	NA	-3	NM_172729	107607	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.095000	0.701493	
mm_155607.1	chrX	83043013	83043213	+	1	NA	NA	NA	94243	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.015000	0.452736	
mm_23437.1	chr3	59312776	59312976	+	1	NA	NA	NA	31380	NM_001162884	242050	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.020000	0.572139	
mm_37924.1	chr4	132842844	132843044	-	1	NA	NA	NA	225	NM_001290725	100336	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	0.050000	0.482587	
mm_172191.1	chr6	51464446	51464646	-	1	NA	NA	NA	5348	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.005000	0.407960	
mm_27100.1	chr3	30491438	30491638	-	1	NA	NA	NA	17949	NM_021442	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.010000	0.328358	
mm_60020.1	chr7	30787805	30788005	+	1	NA	NA	NA	0	NM_001033131	64661	Mm.268157	NM_001033131	ENSMUSG00000074199	Krtdap	Kdap|sk221	keratinocyte differentiation associated protein	protein-coding	0.035000	0.606965	
mm_13721.1	chr2	117249679	117249879	+	1	NA	NA	NA	40	NM_026620	68215	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	0.070000	0.597015	
mm_121445.1	chr14	120430468	120430668	+	1	NA	NA	NA	-47893	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.005000	0.273632	
mm_167219.1	chr8	11408010	11408210	+	1	NA	NA	NA	-69819	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.015000	0.497512	
mm_37337.1	chr4	119657469	119657669	-	1	NA	NA	NA	1376	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.005000	0.562189	
mm_148875.1	chr19	6497838	6498038	+	1	NA	NA	NA	45132	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.110000	0.751244	
mm_104592.1	chr11	97041330	97041530	-	1	NA	NA	NA	-61	NM_027026	69297	Mm.250465	NM_027026	ENSMUSG00000020878	Lrrc46	1700006D24Rik	leucine rich repeat containing 46	protein-coding	0.070000	0.542289	
mm_25712.1	chr3	122566629	122566829	+	1	NA	NA	NA	-25048	NR_106117	102465764		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.015000	0.487562	
mm_103991.1	chr11	84840271	84840471	-	1	NA	NA	NA	11193	NR_046281	74995	Mm.84413	NR_046281	ENSMUSG00000086799	4930502E09Rik	-	RIKEN cDNA 4930502E09 gene	ncRNA	0.040000	0.417910	
mm_29941.1	chr3	132857354	132857554	-	1	NA	NA	NA	21142	NR_102297	101243624	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	0.000000	0.432836	
mm_168021.1	chrY	90737771	90737971	+	1	NA	NA	NA	17179	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.442786	
mm_71915.1	chr8	70139256	70139456	+	1	NA	NA	NA	-143	NM_001145552	72368	Mm.644	NM_001145552	ENSMUSG00000002345	Borcs8	2310045N01Rik|Mef2bnb	BLOC-1 related complex subunit 8	protein-coding	0.075000	0.577114	
mm_67131.1	chr7	70453140	70453340	-	1	NA	NA	NA	-86494	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.020000	0.462687	
mm_57904.1	chr6	131388371	131388571	-	1	NA	NA	NA	-21	NM_011733	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.155000	0.746269	-73(GCCTTTAAATGC,+,0.00),-73(GCCTTTAAATGC,-,0.00)
mm_154532.1	chrM	13678	13878	-	1	NA	NA	NA	NA	NA									0.005000	0.343284	
mm_150987.1	chr19	46516095	46516295	+	1	NA	NA	NA	14547	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.005000	0.412935	
mm_462.1	chr1	36307967	36308167	+	1	NA	NA	NA	334	NM_001172205	214855	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.080000	0.626866	
mm_12522.1	chr2	72152426	72152626	+	1	NA	NA	NA	97909	NM_001204166	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.005000	0.348259	
mm_81452.1	chr9	109816587	109816787	+	1	NA	NA	NA	60	NM_183136	78709	Mm.99613	NM_183136	ENSMUSG00000050074	Spink8	C630041L24Rik	serine peptidase inhibitor, Kazal type 8	protein-coding	0.015000	0.502488	
mm_67401.1	chr7	79924746	79924946	-	1	NA	NA	NA	-4206	NM_009682	11778	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	0.010000	0.432836	
mm_153705.1	chr19	44397720	44397920	-	1	NA	NA	NA	9889	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.020000	0.343284	
mm_62695.1	chr7	110122211	110122411	+	1	NA	NA	NA	252	NM_009516	22390	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.135000	0.741294	
mm_143347.1	chr17	66693965	66694165	-	1	NA	NA	NA	-99443	NM_028998	74556	Mm.218634	NM_028998	ENSMUSG00000024105	Themis3	9130404H23Rik	thymocyte selection associated family member 3	protein-coding	0.020000	0.492537	
mm_31987.1	chr4	89294663	89294863	+	1	NA	NA	NA	-144	NM_009877	12578	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin-dependent kinase inhibitor 2A	protein-coding	0.170000	0.791045	
mm_115189.1	chr13	108549091	108549291	+	1	NA	NA	NA	-104986	NM_011056	238871	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	0.010000	0.253731	
mm_162465.1	chr1	130851351	130851551	+	1	NA	NA	NA	-14326	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.005000	0.457711	
mm_161063.1	chr12	71111230	71111430	+	1	NA	NA	NA	-98	NM_029227	75266	Mm.402075	NM_029227	ENSMUSG00000021078	Tomm20l	4930553D19Rik	translocase of outer mitochondrial membrane 20 homolog (yeast)-like	protein-coding	0.040000	0.606965	
mm_163628.1	chr13	57882169	57882369	-	1	NA	NA	NA	26063	NM_009262	20745	Mm.379020	NM_009262	ENSMUSG00000056222	Spock1	Spock|Ticn1|testican	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	protein-coding	0.015000	0.477612	
mm_89540.1	chr10	94550871	94551071	+	1	NA	NA	NA	-24286	NM_001168684	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.035000	0.547264	
mm_83223.1	chr9	42262039	42262239	-	1	NA	NA	NA	2161	NM_172769	235293	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	0.015000	0.467662	
mm_43024.1	chr5	123908083	123908283	+	1	NA	NA	NA	908	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.045000	0.452736	59(GTTTTTATACCT,+,0.00)
mm_37726.1	chr4	129558684	129558884	-	1	NA	NA	NA	-412	NM_010693	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.020000	0.532338	
mm_124720.1	chr15	6579869	6580069	+	1	NA	NA	NA	122	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.025000	0.467662	
mm_53902.1	chr6	3494456	3494656	-	1	NA	NA	NA	-58	NM_178899	101202	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0.010000	0.467662	
mm_107275.1	chr12	29534501	29534701	+	1	NA	NA	NA	-304	NM_001093776	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.010000	0.437811	
mm_7684.1	chr1	128590725	128590925	-	1	NA	NA	NA	1474	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.030000	0.547264	
mm_35507.1	chr4	41093426	41093626	-	1	NA	NA	NA	4657	NM_016689	11828	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	0.020000	0.601990	
mm_67397.1	chr7	79879956	79880156	-	1	NA	NA	NA	-37704	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.005000	0.522388	
mm_20757.1	chr2	140671334	140671534	-	1	NA	NA	NA	42	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.060000	0.601990	
mm_2667.1	chr1	127204920	127205120	+	1	NA	NA	NA	34	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.090000	0.597015	
mm_63058.1	chr7	122014478	122014678	+	1	NA	NA	NA	6620	NM_028758	74105	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	0.035000	0.402985	
mm_18077.1	chr2	42653198	42653398	-	1	NA	NA	NA	300	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding	0.020000	0.512438	
mm_129812.1	chr15	82998823	82999023	-	1	NA	NA	NA	24215	NM_028728	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.010000	0.522388	
mm_155942.1	chrX	104483039	104483239	+	1	NA	NA	NA	357	NM_001081189	331487	Mm.438275	NM_001081189	ENSMUSG00000073016	Uprt	Gm774	uracil phosphoribosyltransferase	protein-coding	0.050000	0.572139	
mm_56624.1	chr6	112722175	112722375	-	1	NA	NA	NA	-25605	NM_001167730	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.005000	0.388060	
mm_2790.1	chr1	130850605	130850805	+	1	NA	NA	NA	-15072	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.015000	0.482587	-82(ATTTTTAGAGGC,+,0.00)
mm_146928.1	chr18	31949729	31949929	-	1	NA	NA	NA	-193	NM_001025381	574402	Mm.391108	NM_001025381	ENSMUSG00000052229	Gpr17	AI853548	G protein-coupled receptor 17	protein-coding	0.015000	0.587065	
mm_134853.1	chr16	28274211	28274411	-	1	NA	NA	NA	171764	NM_183064	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.000000	0.343284	
mm_16015.1	chr2	167421944	167422144	+	1	NA	NA	NA	334	NM_001304542	77031	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.050000	0.562189	
mm_92953.1	chr10	85266217	85266417	-	1	NA	NA	NA	-81263	NM_007771	12952	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0.030000	0.557214	
mm_104116.1	chr11	86730712	86730912	-	1	NA	NA	NA	26680	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.010000	0.388060	
mm_86005.1	chr9	112233147	112233347	-	1	NA	NA	NA	-746	NM_001177616	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.000000	0.358209	
mm_74053.1	chr8	122282117	122282317	+	1	NA	NA	NA	76	NM_009569	22761	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.180000	0.810945	
mm_171749.1	chr5	101888010	101888210	-	1	NA	NA	NA	122980	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.040000	0.477612	
mm_31866.1	chr4	80003343	80003543	+	1	NA	NA	NA	-830770	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.015000	0.343284	
mm_157963.1	chrX	88760219	88760419	-	1	NA	NA	NA	-766	NR_037313	100499530		NR_037313	ENSMUSG00000084559	Mir1906-2	mmu-mir-1906-2	microRNA 1906-2	ncRNA	0.025000	0.437811	
mm_124708.1	chr15	6569356	6569556	+	1	NA	NA	NA	-10391	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.015000	0.477612	
mm_90065.1	chr10	116301397	116301597	+	1	NA	NA	NA	123	NM_029928	19263	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0.140000	0.761194	
mm_7561.1	chr1	124723257	124723457	-	1	NA	NA	NA	-677798	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.010000	0.383085	
mm_149149.1	chr19	9006833	9007033	+	1	NA	NA	NA	-10971	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.005000	0.457711	
mm_14673.1	chr2	139493958	139494158	+	1	NA	NA	NA	138	NM_175467	228677	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	0.005000	0.412935	33(TTCCTTTAAAGG,-,0.00),34(TCCTTTAAAGGC,+,0.00),34(TCCTTTAAAGGC,-,0.00),35(CCTTTAAAGGCT,+,0.00)
mm_89629.1	chr10	96371190	96371390	+	1	NA	NA	NA	145083	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.035000	0.532338	66(CCCTTTCTAGAC,+,0.00)
mm_49075.1	chr6	6118254	6118454	+	1	NA	NA	NA	98819	NM_015829	50799	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	0.010000	0.487562	
mm_132557.1	chr16	37963283	37963483	+	1	NA	NA	NA	46887	NM_153394	239845	Mm.228018	NM_153394	ENSMUSG00000046961	Gpr156	Gababl	G protein-coupled receptor 156	protein-coding	0.015000	0.472637	
mm_49317.1	chr6	18848492	18848692	+	1	NA	NA	NA	-43	NM_133939	76522	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	0.125000	0.666667	
mm_9391.1	chr1	172217842	172218042	-	1	NA	NA	NA	1953	NM_009813	12372	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.005000	0.497512	
mm_75185.1	chr8	36953050	36953250	-	1	NA	NA	NA	-708	NM_001194940	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.020000	0.487562	
mm_59021.1	chr7	19279098	19279298	+	1	NA	NA	NA	851	NM_177691	232941	Mm.134068	NM_177691	ENSMUSG00000030402	Ppm1n	A930002H20|C79127	protein phosphatase, Mg2+/Mn2+ dependent, 1N (putative)	protein-coding	0.075000	0.641791	
mm_100432.1	chr11	119468934	119469134	+	1	NA	NA	NA	-22313	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.015000	0.487562	
mm_2665.1	chr1	126844347	126844547	+	1	NA	NA	NA	-13815	NM_176957	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.005000	0.393035	
mm_152150.1	chr19	7217436	7217636	-	1	NA	NA	NA	80	NM_007750	12868	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0.110000	0.656716	
mm_124855.1	chr15	9533478	9533678	+	1	NA	NA	NA	-3702	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.010000	0.432836	
mm_62986.1	chr7	120203922	120204122	+	1	NA	NA	NA	58	NM_026458	67928	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	0.095000	0.671642	
mm_16604.1	chr2	5063922	5064122	-	1	NA	NA	NA	-84	NM_181848	71648	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0.115000	0.686567	
mm_146664.1	chr18	12190289	12190489	-	1	NA	NA	NA	21659	NM_029623	76482	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1	RIKEN cDNA 3110002H16 gene	protein-coding	0.030000	0.547264	
mm_122553.1	chr14	48881750	48881950	-	1	NA	NA	NA	2977	NR_033783	66770	Mm.136954	NR_033783		4933429O19Rik	1700031B11Rik	RIKEN cDNA 4933429O19 gene	ncRNA	0.020000	0.472637	
mm_41862.1	chr5	104440527	104440727	+	1	NA	NA	NA	4435	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.005000	0.363184	
mm_131408.1	chr16	14451631	14451831	+	1	NA	NA	NA	90173	NM_008576	17250	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.010000	0.502488	
mm_43667.1	chr5	138754981	138755181	+	1	NA	NA	NA	0	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.160000	0.791045	
mm_170040.1	chr17	24205414	24205614	-	1	NA	NA	NA	48	NM_001163851	224617	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	0.140000	0.761194	
mm_2358.1	chr1	92950799	92950999	+	1	NA	NA	NA	-309	NR_015525	100037260	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	0.005000	0.557214	
mm_30185.1	chr3	144689582	144689782	-	1	NA	NA	NA	30653	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.000000	0.368159	61(GCTTTTAGGCAA,+,0.00)
mm_14771.1	chr2	145786167	145786367	+	1	NA	NA	NA	151	NM_028724	74030	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.020000	0.477612	
mm_99417.1	chr11	102309167	102309367	+	1	NA	NA	NA	8020	NM_001044383	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.065000	0.631841	
mm_111774.1	chr12	104044283	104044483	-	1	NA	NA	NA	60	NM_026535	68054	Mm.20286	NM_026535	ENSMUSG00000041567	Serpina12	4632419J12Rik	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12	protein-coding	0.010000	0.552239	
mm_84807.1	chr9	77323730	77323930	-	1	NA	NA	NA	24040	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.000000	0.363184	
mm_4735.1	chr1	181576547	181576747	+	1	NA	NA	NA	-65196	NM_207280	403180	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	0.030000	0.567164	
mm_96868.1	chr11	70167091	70167291	+	1	NA	NA	NA	568	NM_010796	17312	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	0.010000	0.457711	
mm_97317.1	chr11	76902060	76902260	+	1	NA	NA	NA	-2385	NM_025655	66601	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.010000	0.442786	
mm_14181.1	chr2	127008634	127008834	+	1	NA	NA	NA	23	NM_175550	108011	Mm.134045	NM_175550	ENSMUSG00000001998	Ap4e1	2310033A20Rik|9930028M04Rik|AV087807	adaptor-related protein complex AP-4, epsilon 1	protein-coding	0.090000	0.616915	
mm_135753.1	chr16	55974474	55974674	-	1	NA	NA	NA	43	NR_027965	66391	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	0.120000	0.766169	
mm_100560.1	chr11	120730157	120730357	+	1	NA	NA	NA	1764	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.015000	0.616915	
mm_27799.1	chr3	75881280	75881480	-	1	NA	NA	NA	75569	NM_175193	73124	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.015000	0.388060	
mm_143437.1	chr17	70852147	70852347	-	1	NA	NA	NA	-513	NM_001164075	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.045000	0.427861	
mm_107488.1	chr12	38780206	38780406	+	1	NA	NA	NA	224	NM_007960	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.035000	0.477612	
mm_45481.1	chr5	70842259	70842459	-	1	NA	NA	NA	258	NM_010252	14405	Mm.255292	NM_010252	ENSMUSG00000001260	Gabrg1	GabaA|GabaA/BZ	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1	protein-coding	0.035000	0.527363	
mm_91262.1	chr10	23350121	23350321	-	1	NA	NA	NA	-278	NM_010167	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.130000	0.776119	
mm_111914.1	chr12	108835769	108835969	-	1	NA	NA	NA	7	NM_181328	214663	Mm.266264	NM_181328	ENSMUSG00000021265	Slc25a29	C030003J19Rik|CACL|mCACL	solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29	protein-coding	0.125000	0.721393	47(GCTTTTCTAGGA,+,0.00)
mm_49092.1	chr6	7562244	7562444	+	1	NA	NA	NA	7273	NM_009311	21333	Mm.1440	NM_009311	ENSMUSG00000061762	Tac1	4930528L02Rik|NK-1|NK1|Nkna|PPT-A|PPTA|SP	tachykinin 1	protein-coding	0.025000	0.412935	
mm_25656.1	chr3	121531566	121531766	+	1	NA	NA	NA	678	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.025000	0.442786	
mm_151380.1	chr19	56072007	56072207	+	1	NA	NA	NA	176786	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.020000	0.492537	67(GTCCATAAAGAG,-,0.00)
mm_144283.1	chr18	11917961	11918161	+	1	NA	NA	NA	-77623	NR_035447	100316686		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0.000000	0.393035	
mm_55454.1	chr6	67339568	67339768	-	1	NA	NA	NA	26	NM_001311141	16162	Mm.188337	NM_008354	ENSMUSG00000018341	Il12rb2	A930027I18Rik|IL-12RB2|Ifnm	interleukin 12 receptor, beta 2	protein-coding	0.000000	0.447761	58(CCATATAAATGG,-,0.00)
mm_39562.1	chr5	23102301	23102501	+	1	NA	NA	NA	331952	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.015000	0.388060	0(CTCTCTTTAAGC,-,0.00)
mm_54955.1	chr6	48687453	48687653	-	1	NA	NA	NA	2975	NM_174990	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.015000	0.427861	
mm_81514.1	chr9	110035233	110035433	+	1	NA	NA	NA	-16688	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.010000	0.482587	
mm_60894.1	chr7	46397283	46397483	+	1	NA	NA	NA	915	NM_001112739	16502	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.055000	0.686567	53(CGCCTTAAAGAC,-,0.00),55(CCTTAAAGACCC,+,0.00)
mm_106014.1	chr11	115933381	115933581	-	1	NA	NA	NA	11	NM_130454	170472	Mm.379351	NM_130454	ENSMUSG00000020752	Recql5	RecQ5|Recq5b|Recql5b	RecQ protein-like 5	protein-coding	0.060000	0.552239	
mm_164881.1	chr18	58210490	58210690	-	1	NA	NA	NA	-664	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.115000	0.781095	
mm_88186.1	chr10	69994301	69994501	+	1	NA	NA	NA	68869	NM_009670	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.050000	0.487562	
mm_47630.1	chr5	125294022	125294222	-	1	NA	NA	NA	46972	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.045000	0.587065	
mm_164420.1	chr16	43235858	43236058	+	1	NA	NA	NA	-11326	NM_181058	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.025000	0.388060	
mm_79082.1	chr9	46242355	46242555	+	1	NA	NA	NA	1611	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.025000	0.547264	
mm_64441.1	chr7	142653612	142653812	+	1	NA	NA	NA	1284	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.015000	0.547264	
mm_153456.1	chr19	41206779	41206979	-	1	NA	NA	NA	-105	NM_011904	24087	Mm.89983	NM_011904	ENSMUSG00000025013	Tll2	-	tolloid-like 2	protein-coding	0.075000	0.661692	
mm_142902.1	chr17	52212929	52213129	-	1	NA	NA	NA	330302	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.005000	0.452736	
mm_100742.1	chr11	4118602	4118802	-	1	NA	NA	NA	27	NM_144520	67815	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	0.075000	0.666667	
mm_103110.1	chr11	69981134	69981334	-	1	NA	NA	NA	1	NM_018740	54351	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.065000	0.686567	
mm_54570.1	chr6	38023187	38023387	-	1	NA	NA	NA	23709	NM_177200	320590	Mm.197449	NM_177200	ENSMUSG00000029830	Svopl	9430071P14Rik	SV2 related protein homolog (rat)-like	protein-coding	0.020000	0.467662	
mm_172134.1	chr6	34598854	34599054	+	1	NA	NA	NA	450	NM_001347100	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.025000	0.502488	
mm_23780.1	chr3	79161559	79161759	+	1	NA	NA	NA	-15784	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.030000	0.398010	
mm_75390.1	chr8	45630550	45630750	-	1	NA	NA	NA	2899	NM_001310707	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.020000	0.467662	
mm_130096.1	chr15	89425443	89425643	-	1	NA	NA	NA	319	NM_009948	12895	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	0.080000	0.701493	
mm_36194.1	chr4	62329322	62329522	-	1	NA	NA	NA	31126	NM_001045528	338355	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.010000	0.492537	
mm_169254.1	chr13	78357882	78358082	-	1	NA	NA	NA	-159109	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.015000	0.407960	
mm_169802.1	chr16	18011643	18011843	+	1	NA	NA	NA	31178	NM_016983	22363	Mm.377118	NM_016983	ENSMUSG00000059280	Vpreb2	CD179b|VpreB1|Vpreb-2	pre-B lymphocyte gene 2	protein-coding	0.030000	0.487562	-31(CTTTAAATACCC,+,0.00)
mm_130984.1	chr15	103347159	103347359	-	1	NA	NA	NA	3266	NR_105928	102466775		NR_105928	ENSMUSG00000098419	Mir6963	Gm27724|mmu-mir-6963	microRNA 6963	ncRNA	0.005000	0.442786	
mm_132544.1	chr16	37882763	37882963	+	1	NA	NA	NA	14463	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.015000	0.552239	
mm_108818.1	chr12	95695295	95695495	+	1	NA	NA	NA	3169	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.110000	0.716418	
mm_83082.1	chr9	40189412	40189612	-	1	NA	NA	NA	2433	NM_146615	258608	Mm.377590	NM_146615	ENSMUSG00000051095	Olfr986	MOR104-3	olfactory receptor 986	protein-coding	0.005000	0.293532	
mm_32345.1	chr4	104775768	104775968	+	1	NA	NA	NA	9551	NM_001316671	110382	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding	0.005000	0.482587	
mm_13892.1	chr2	120404671	120404871	+	1	NA	NA	NA	-655	NM_001110496	211499	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0.020000	0.427861	
mm_106576.1	chr11	120726563	120726763	-	1	NA	NA	NA	618	NM_026428	67880	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	0.035000	0.527363	
mm_46617.1	chr5	108132426	108132626	-	1	NA	NA	NA	65	NM_001347383	73130	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik	transmembrane p24 trafficking protein 5	protein-coding	0.070000	0.621891	
mm_15668.1	chr2	163405724	163405924	+	1	NA	NA	NA	-7831	NM_001205076	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	0.000000	0.407960	
mm_92284.1	chr10	71285336	71285536	-	1	NA	NA	NA	-174	NM_145420	216080	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	0.090000	0.651741	
mm_37332.1	chr4	119638701	119638901	-	1	NA	NA	NA	1069	NM_008190	14915	Mm.2614	NM_008190	ENSMUSG00000023247	Guca2a	Guca2	guanylate cyclase activator 2a (guanylin)	protein-coding	0.035000	0.572139	
mm_164742.1	chr17	73871007	73871207	-	1	NA	NA	NA	66266	NM_020578	57440	Mm.18526	NM_020578	ENSMUSG00000024065	Ehd3	Ehd2	EH-domain containing 3	protein-coding	0.030000	0.572139	85(TCATTTATGGCC,+,0.00)
mm_126659.1	chr15	84232001	84232201	+	1	NA	NA	NA	58	NM_133167	170736	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.090000	0.701493	
mm_158267.1	chrX	109160831	109161031	-	1	NA	NA	NA	-35825	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.000000	0.333333	9(ACTTATATACCC,+,0.00)
mm_108094.1	chr12	74298684	74298884	+	1	NA	NA	NA	1310	NM_198866	386753	Mm.341686	NM_198866	ENSMUSG00000029878	Dbpht2	Spot2	DNA binding protein with his-thr domain	protein-coding	0.000000	0.477612	
mm_62570.1	chr7	104244424	104244624	+	1	NA	NA	NA	67	NM_030684	94094	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	0.020000	0.512438	
mm_151417.1	chr19	56744359	56744559	+	1	NA	NA	NA	22087	NM_007419	11554	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.030000	0.502488	
mm_90015.1	chr10	115315583	115315783	+	1	NA	NA	NA	-92	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.110000	0.651741	
mm_128102.1	chr15	27968107	27968307	-	1	NA	NA	NA	57641	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.025000	0.447761	
mm_87211.1	chr10	39777489	39777689	+	1	NA	NA	NA	45429	NM_011264	19714	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	0.005000	0.333333	27(AGCTTTTAAAAG,-,0.00),28(GCTTTTAAAAGA,+,0.00),28(GCTTTTAAAAGA,-,0.00),29(CTTTTAAAAGAT,+,0.00)
mm_52758.1	chr6	120776422	120776622	+	1	NA	NA	NA	2754	NM_001081048	71803	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	0.010000	0.522388	
mm_26393.1	chr3	142572838	142573038	+	1	NA	NA	NA	12442	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.010000	0.333333	
mm_87882.1	chr10	61695440	61695640	+	1	NA	NA	NA	26	NM_001272091	71767	Mm.71514	NM_027912	ENSMUSG00000020087	Tysnd1	1300019N10Rik	trypsin domain containing 1	protein-coding	0.090000	0.651741	
mm_132454.1	chr16	36041183	36041383	+	1	NA	NA	NA	93	NM_027113	69544	Mm.37802	NM_027113	ENSMUSG00000034379	Wdr5b	2310009C03Rik|AI606931	WD repeat domain 5B	protein-coding	0.055000	0.542289	
mm_10540.1	chr2	16463750	16463950	+	1	NA	NA	NA	107546	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.010000	0.378109	
mm_6714.1	chr1	82291282	82291482	-	1	NA	NA	NA	57	NM_010570	16367	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.065000	0.671642	
mm_2050.1	chr1	87403610	87403810	+	1	NA	NA	NA	-8981	NM_001110227	100040591	Mm.443539	NM_001110227	ENSMUSG00000079436	Kcnj13	-	potassium inwardly-rectifying channel, subfamily J, member 13	protein-coding	0.020000	0.388060	
mm_97777.1	chr11	82167003	82167203	+	1	NA	NA	NA	12709	NM_011329	20290	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|Scya1|Tca-3	chemokine (C-C motif) ligand 1	protein-coding	0.005000	0.338308	
mm_135333.1	chr16	38828663	38828863	-	1	NA	NA	NA	-14	NM_029042	74663	Mm.50263	NM_029042	ENSMUSG00000022798	4930435E12Rik	TSCPA	RIKEN cDNA 4930435E12 gene	protein-coding	0.010000	0.517413	
mm_57509.1	chr6	125468229	125468429	-	1	NA	NA	NA	26426	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.030000	0.477612	-33(CCTTTTATAAAA,+,0.00),-31(TTTTATAAAAGG,-,0.00)
mm_152449.1	chr19	10829808	10830008	-	1	NA	NA	NA	150	NM_001037801	12511	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.035000	0.577114	
mm_57726.1	chr6	128933562	128933762	-	1	NA	NA	NA	-719	NM_027562	70809	Mm.439891	NM_027562	ENSMUSG00000000248	Clec2g	4632413B12Rik|Clr-c|Clr-d|Clrc|Clrd|Clrx|Ddv10|Ocilrp1	C-type lectin domain family 2, member g	protein-coding	0.005000	0.333333	
mm_133976.1	chr16	4509494	4509694	-	1	NA	NA	NA	13459	NM_175347	106393	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	0.010000	0.442786	
mm_152501.1	chr19	11165217	11165417	-	1	NA	NA	NA	3	NM_027074	69416	Mm.72491	NM_027074	ENSMUSG00000024728	1700025F22Rik	-	RIKEN cDNA 1700025F22 gene	protein-coding	0.045000	0.597015	
mm_95098.1	chr11	34046986	34047186	+	1	NA	NA	NA	-115	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.010000	0.472637	
mm_50713.1	chr6	52175097	52175297	+	1	NA	NA	NA	9523	NR_131182	105242657	Mm.490651	NR_131182	ENSMUSG00000056445	Hoxaas2	2810043O09Rik|5730446D14Rik	Hoxa cluster antisense RNA 2	ncRNA	0.015000	0.507463	
mm_109330.1	chr12	109566225	109566425	+	1	NA	NA	NA	2633	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.005000	0.467662	
mm_139384.1	chr17	52149190	52149390	+	1	NA	NA	NA	266563	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.010000	0.462687	
mm_114665.1	chr13	78201880	78202080	+	1	NA	NA	NA	-3107	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.045000	0.557214	
mm_132654.1	chr16	41533244	41533444	+	1	NA	NA	NA	2	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.105000	0.686567	
mm_59131.1	chr7	19965381	19965581	+	1	NA	NA	NA	69	NM_027839	71601	Mm.98097	NM_027839	ENSMUSG00000070777	Ceacam20	9130012D09Rik	carcinoembryonic antigen-related cell adhesion molecule 20	protein-coding	0.005000	0.577114	
mm_123375.1	chr14	63245176	63245376	-	1	NA	NA	NA	-5	NM_001310610	14463	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0.135000	0.761194	
mm_100651.1	chr11	3150254	3150454	-	1	NA	NA	NA	26333	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.050000	0.582090	
mm_124041.1	chr14	77036555	77036755	-	1	NA	NA	NA	-38	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding	0.150000	0.776119	
mm_155078.1	chrX	46328910	46329110	+	1	NA	NA	NA	3	NM_028514	73360	Mm.60929	NM_028514	ENSMUSG00000046615	Actrt1	1700061J02Rik|Arp-T1	actin-related protein T1	protein-coding	0.000000	0.427861	
mm_122094.1	chr14	30626319	30626519	-	1	NA	NA	NA	-211	NM_011103	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.035000	0.611940	
mm_67301.1	chr7	79300849	79301049	-	1	NA	NA	NA	27683	NM_018811	54608	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.025000	0.482587	
mm_40291.1	chr5	43233871	43234071	+	1	NA	NA	NA	508	NM_001177379	231207	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.090000	0.711443	
mm_98148.1	chr11	87592557	87592757	+	1	NA	NA	NA	440	NM_133215	170749	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0.045000	0.567164	
mm_87769.1	chr10	60293328	60293528	+	1	NA	NA	NA	8967	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.020000	0.557214	63(GGCCCTTTAAGG,-,0.00),64(GCCCTTTAAGGC,-,0.00),65(CCCTTTAAGGCA,+,0.00),66(CCTTTAAGGCAC,+,0.00)
mm_131170.1	chr16	7069633	7069833	+	1	NA	NA	NA	-102	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.030000	0.482587	
mm_38012.1	chr4	133753541	133753741	-	1	NA	NA	NA	-30	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.135000	0.800995	
mm_117032.1	chr13	58274252	58274452	-	1	NA	NA	NA	-164	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.165000	0.761194	
mm_83887.1	chr9	55512093	55512293	-	1	NA	NA	NA	50	NM_145615	110842	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	0.110000	0.676617	
mm_128480.1	chr15	50889882	50890082	-	1	NA	NA	NA	59	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.065000	0.467662	
mm_88398.1	chr10	76581441	76581641	+	1	NA	NA	NA	5893	NM_080845	14317	Mm.36278	NM_080845	ENSMUSG00000001155	Ftcd	-	formiminotransferase cyclodeaminase	protein-coding	0.025000	0.587065	
mm_113280.1	chr13	30136417	30136617	+	1	NA	NA	NA	27	NM_153546	218121	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	0.120000	0.776119	
mm_29818.1	chr3	129216820	129217020	-	1	NA	NA	NA	2988	NM_001287048	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.065000	0.517413	
mm_136599.1	chr17	5103146	5103346	+	1	NA	NA	NA	108172	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.005000	0.228856	
mm_51076.1	chr6	66912544	66912744	+	1	NA	NA	NA	15753	NM_001177558	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.015000	0.398010	
mm_155917.1	chrX	102037193	102037393	+	1	NA	NA	NA	34014	NM_001278534	331474	Mm.23297	NM_183318	ENSMUSG00000049191	Rgag4	6430402L03Rik|Mar5|Mart5|mKIAA2001	retrotransposon gag domain containing 4	protein-coding	0.005000	0.562189	
mm_16607.1	chr2	5083722	5083922	-	1	NA	NA	NA	-19884	NM_181848	71648	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0.030000	0.472637	
mm_154919.1	chrX	22461551	22461751	+	1	NA	NA	NA	55	NR_033731	76705	Mm.399727	NM_029707		Ppp1r2-ps7	1700023I07Rik	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 7	pseudo	0.025000	0.587065	
mm_65715.1	chr7	28378231	28378431	-	1	NA	NA	NA	897	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.040000	0.621891	
mm_10530.1	chr2	16404060	16404260	+	1	NA	NA	NA	47856	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.000000	0.348259	
mm_140627.1	chr17	12393031	12393231	-	1	NA	NA	NA	14522	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.020000	0.492537	
mm_121458.1	chr14	120490912	120491112	+	1	NA	NA	NA	12551	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.015000	0.457711	
mm_61000.1	chr7	49304165	49304365	+	1	NA	NA	NA	58076	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.045000	0.656716	
mm_39155.1	chr4	155414782	155414982	-	1	NA	NA	NA	5692	NM_001166029	544678	Mm.472798	NM_177674	ENSMUSG00000078490	Cfap74	2010015L04Rik|A530045M11	cilia and flagella associated protein 74	protein-coding	0.015000	0.442786	
mm_149560.1	chr19	12700012	12700212	+	1	NA	NA	NA	4322	NM_029550	64697	Mm.218561	NM_029550	ENSMUSG00000024694	Keg1	0610008P16Rik|AI316519|GS4059	kidney expressed gene 1	protein-coding	0.000000	0.388060	-91(TTTTTAATAGCC,+,0.00)
mm_32535.1	chr4	109000820	109001020	+	1	NA	NA	NA	115	NM_146150	230598	Mm.274950	NM_146150	ENSMUSG00000053510	Nrd1	2600011I06Rik|AI875733|NRD-C|Nrdc	nardilysin, N-arginine dibasic convertase, NRD convertase 1	protein-coding	0.075000	0.601990	
mm_135311.1	chr16	38712976	38713176	-	1	NA	NA	NA	-41	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.050000	0.562189	
mm_115818.1	chr13	19824151	19824351	-	1	NA	NA	NA	6	NM_181754	353346	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	0.015000	0.487562	
mm_8027.1	chr1	135131060	135131260	-	1	NA	NA	NA	1415	NM_007955	13924	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP|mOST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	0.015000	0.547264	
mm_105130.1	chr11	101417300	101417500	-	1	NA	NA	NA	33	NM_144829	69684	Mm.146283	NM_144829	ENSMUSG00000075528	Aarsd1	1110069E20Rik|2310044P18Rik|AA589600|AlaX|AlaXp-II	alanyl-tRNA synthetase domain containing 1	protein-coding	0.135000	0.671642	
mm_123234.1	chr14	60087301	60087501	-	1	NA	NA	NA	-567	NM_015803	50769	Mm.319599	NM_015803	ENSMUSG00000021983	Atp8a2	AI415030|Atpc1b|agil|wl	ATPase, aminophospholipid transporter-like, class I, type 8A, member 2	protein-coding	0.020000	0.497512	
mm_66618.1	chr7	45474364	45474564	-	1	NA	NA	NA	-7566	NM_007527	12028	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.000000	0.542289	
mm_60073.1	chr7	33743640	33743840	+	1	NA	NA	NA	-59	NM_001099329	100043860	Mm.389875	NM_001099329	ENSMUSG00000078753	Scgb1b24	Abpa24|Gm12769|OTTMUSG00000008385	secretoglobin, family 1B, member 24	protein-coding	0.015000	0.547264	
mm_70220.1	chr7	144941436	144941636	-	1	NA	NA	NA	-1611	NM_007631	12443	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.070000	0.646766	-3(CCCTTTATGCCC,+,0.00)
mm_120144.1	chr14	60382670	60382870	+	1	NA	NA	NA	4484	NM_001164705	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.010000	0.457711	
mm_148953.1	chr19	7297584	7297784	+	1	NA	NA	NA	-2237	NM_001080390	13728	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.000000	0.437811	
mm_5593.1	chr1	39557724	39557924	-	1	NA	NA	NA	-8984	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.000000	0.318408	-39(CACTTTTTATGG,-,0.00),-37(CTTTTTATGGGC,+,0.00)
mm_73977.1	chr8	120536466	120536666	+	1	NA	NA	NA	709	NM_001145897	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.090000	0.696517	
mm_166754.1	chr6	126164877	126165077	-	1	NA	NA	NA	-17	NM_001164035	18205	Mm.267570	NM_008742	ENSMUSG00000049107	Ntf3	AI316846|AI835689|HDNF|NGF-2|Nt3|Ntf-3	neurotrophin 3	protein-coding	0.085000	0.636816	
mm_135245.1	chr16	37384859	37385059	-	1	NA	NA	NA	-1	NM_172440	207227	Mm.80170	NM_172440	ENSMUSG00000022829	Stxbp5l	9430094L02|A830015P08Rik|LLGL4|T2dm1|t2md1|tomosyn-2	syntaxin binding protein 5-like	protein-coding	0.100000	0.751244	
mm_64945.1	chr7	16366357	16366557	-	1	NA	NA	NA	21439	NM_001285892	56459	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	0.025000	0.507463	
mm_77039.1	chr8	109575261	109575461	-	1	NA	NA	NA	3811	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.045000	0.572139	
mm_61852.1	chr7	88299389	88299589	+	1	NA	NA	NA	21404	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.010000	0.432836	33(CTGCATATAAGG,-,0.00)
mm_51074.1	chr6	66896362	66896562	+	1	NA	NA	NA	65	NM_001177556	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.165000	0.796020	
mm_50232.1	chr6	42350975	42351175	+	1	NA	NA	NA	1247	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.025000	0.671642	
mm_166132.1	chr4	155624261	155624461	-	1	NA	NA	NA	394	NR_040441	100502734	Mm.306018	NR_040441	ENSMUSG00000086682	Gm16023	OTTMUSG00000029160	predicted gene 16023	ncRNA	0.025000	0.462687	
mm_154227.1	chr19	59943489	59943689	-	1	NA	NA	NA	65	NM_001164367	74998	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	0.155000	0.786070	
mm_7814.1	chr1	131910170	131910370	-	1	NA	NA	NA	-188	NM_175294	98415	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.055000	0.557214	
mm_4665.1	chr1	180374840	180375040	+	1	NA	NA	NA	-44391	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.015000	0.457711	
mm_161781.1	chr17	42315819	42316019	+	1	NA	NA	NA	-28	NM_028474	627626	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	0.030000	0.567164	
mm_76111.1	chr8	80738944	80739144	-	1	NA	NA	NA	415	NM_053124	93762	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.185000	0.815920	
mm_75665.1	chr8	66490660	66490860	-	1	NA	NA	NA	-4253	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.010000	0.422886	
mm_172160.1	chr6	44420449	44420649	-	1	NA	NA	NA	-639512	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.025000	0.527363	
mm_108753.1	chr12	88957326	88957526	+	1	NA	NA	NA	4036	NM_172544	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.000000	0.333333	
mm_134700.1	chr16	22657112	22657312	-	1	NA	NA	NA	19	NM_138650	110197	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0.105000	0.731343	
mm_50347.1	chr6	48589417	48589617	+	1	NA	NA	NA	72	NM_183309	330305	Mm.123868	NM_183309	ENSMUSG00000052730	Gm5111	A630038D02|EG330305	predicted gene 5111	protein-coding	0.020000	0.487562	
mm_118243.1	chr13	111808593	111808793	-	1	NA	NA	NA	290	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.150000	0.766169	
mm_135053.1	chr16	33787018	33787218	-	1	NA	NA	NA	-6919	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.005000	0.527363	
mm_145928.1	chr18	67133417	67133617	+	1	NA	NA	NA	-43	NM_010307	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.080000	0.691542	81(GCCTTTAAGGAG,+,0.00),82(CCTTTAAGGAGC,+,0.00)
mm_93417.1	chr10	108690114	108690314	-	1	NA	NA	NA	9946	NM_203660	368203	Mm.452758	NM_203660		Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding	0.000000	0.353234	
mm_79484.1	chr9	56995033	56995233	+	1	NA	NA	NA	165	NM_019651	56294	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	0.140000	0.756219	
mm_85918.1	chr9	111119164	111119364	-	1	NA	NA	NA	1153	NM_001164838	71268	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.025000	0.427861	
mm_64570.1	chr7	144897026	144897226	+	1	NA	NA	NA	594	NM_008003	14170	Mm.3904	NM_008003	ENSMUSG00000031073	Fgf15	FGF19	fibroblast growth factor 15	protein-coding	0.085000	0.601990	
mm_30919.1	chr4	32657089	32657289	+	1	NA	NA	NA	70	NM_001081392	100019	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	0.125000	0.676617	
mm_144328.1	chr18	12974328	12974528	+	1	NA	NA	NA	2176	NM_008378	16210	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	0.065000	0.616915	
mm_112208.1	chr12	113427224	113427424	-	1	NA	NA	NA	-62241	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.288557	
mm_152778.1	chr19	21174756	21174956	-	1	NA	NA	NA	70146	NR_126458	75354	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.015000	0.532338	
mm_84902.1	chr9	79961869	79962069	-	1	NA	NA	NA	15913	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.030000	0.542289	
mm_18083.1	chr2	44920566	44920766	-	1	NA	NA	NA	-59044	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.005000	0.363184	
mm_60912.1	chr7	46795712	46795912	+	1	NA	NA	NA	69	NM_001005248	246694	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	Hermansky-Pudlak syndrome 5	protein-coding	0.125000	0.721393	
mm_167254.1	chr8	24823883	24824083	-	1	NA	NA	NA	386	NM_001272058	11499	Mm.143889	NM_007401	ENSMUSG00000031554	Adam5	tMDC II|tMDCII	a disintegrin and metallopeptidase domain 5	protein-coding	0.025000	0.567164	15(GCATCTTAAAGG,-,0.00)
mm_102900.1	chr11	69423902	69424102	-	1	NA	NA	NA	-10327	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.020000	0.467662	-54(GGGTCTAAAGGC,-,0.00)
mm_125316.1	chr15	38219214	38219414	+	1	NA	NA	NA	111	NM_008757	18285	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0.000000	0.417910	
mm_114642.1	chr13	76579574	76579774	+	1	NA	NA	NA	194713	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.020000	0.512438	
mm_12875.1	chr2	84650823	84651023	+	1	NA	NA	NA	-183	NM_001085448	12388	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.020000	0.358209	
mm_162987.1	chr11	23020185	23020385	+	1	NA	NA	NA	6898	NM_028672	73873	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0.030000	0.447761	
mm_155470.1	chrX	73639341	73639541	+	1	NA	NA	NA	0	NM_029352	75590	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	0.090000	0.696517	
mm_53263.1	chr6	127940194	127940394	+	1	NA	NA	NA	52672	NM_026743	68498	Mm.174368	NM_026743	ENSMUSG00000030351	Tspan11	1110014F12Rik|AU067806	tetraspanin 11	protein-coding	0.005000	0.507463	
mm_57879.1	chr6	131247255	131247455	-	1	NA	NA	NA	7	NM_001170851	16633	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	0.010000	0.422886	
mm_157818.1	chrX	74023813	74024013	-	1	NA	NA	NA	5	NM_001177975	16179	Mm.38241	NM_008363	ENSMUSG00000031392	Irak1	AA408924|IRAK|IRAK-1|IRAK1-S|IRAK1b|Il1rak|Plpk|mPLK	interleukin-1 receptor-associated kinase 1	protein-coding	0.125000	0.716418	
mm_154435.1	chrM	741	941	-	1	NA	NA	NA	NA	NA									0.020000	0.348259	
mm_77232.1	chr8	115704285	115704485	-	1	NA	NA	NA	2509	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.015000	0.378109	
mm_150695.1	chr19	42170518	42170718	+	1	NA	NA	NA	51	NM_001164531	319740	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	0.140000	0.756219	
mm_77348.1	chr8	119574850	119575050	-	1	NA	NA	NA	250	NM_175185	72552	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	0.105000	0.726368	
mm_115541.1	chr13	6648645	6648845	-	1	NA	NA	NA	26	NM_019703	56421	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.090000	0.676617	
mm_51839.1	chr6	90302046	90302246	+	1	NA	NA	NA	876	NM_177738	243535	Mm.233854	NM_177738	ENSMUSG00000049694	BC048671	-	cDNA sequence BC048671	protein-coding	0.000000	0.547264	
mm_169058.1	chr13	23329708	23329908	-	1	NA	NA	NA	16283	NR_131052	75887	Mm.416957	NR_131052	ENSMUSG00000087097	4930586N03Rik	-	RIKEN cDNA 4930586N03 gene	ncRNA	0.025000	0.482587	
mm_6280.1	chr1	69683211	69683411	-	1	NA	NA	NA	2649	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.030000	0.467662	
mm_43004.1	chr5	123489215	123489415	+	1	NA	NA	NA	-10	NM_001033461	381741	Mm.297826	NM_001033461	ENSMUSG00000063409	Lrrc43	Gm1061	leucine rich repeat containing 43	protein-coding	0.065000	0.626866	
mm_126342.1	chr15	79900254	79900454	+	1	NA	NA	NA	5331	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.015000	0.611940	
mm_168412.1	chr11	3176584	3176784	-	1	NA	NA	NA	16779	NM_030207	78887	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.005000	0.402985	
mm_70628.1	chr8	13705818	13706018	+	1	NA	NA	NA	29	NM_001101519	403185	Mm.252143	NM_001101519	ENSMUSG00000090336	4932443I19Rik	A230061C02Rik|Gm1106	RIKEN cDNA 4932443I19 gene	protein-coding	0.020000	0.592040	
mm_5300.1	chr1	21298140	21298340	-	1	NA	NA	NA	72	NR_002858	241041	Mm.290634	NR_002858	ENSMUSG00000025936	Gm4956	EG241041	predicted gene 4956	pseudo	0.000000	0.472637	
mm_87979.1	chr10	63800772	63800972	+	1	NA	NA	NA	-20183	NM_001164519	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.040000	0.472637	29(CCATAAATACCC,+,0.00)
mm_157281.1	chrX	20860832	20861032	-	1	NA	NA	NA	2250	NR_049190	100885829		NR_049190	ENSMUSG00000093408	Mir5617	Gm25192|mir-5617|mmu-mir-5617	microRNA 5617	ncRNA	0.000000	0.487562	
mm_36021.1	chr4	56990218	56990418	-	1	NA	NA	NA	73	NM_001142965	230235	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	0.165000	0.810945	
mm_149637.1	chr19	17394009	17394209	+	1	NA	NA	NA	66	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.135000	0.741294	
mm_133118.1	chr16	65814977	65815177	+	1	NA	NA	NA	-556	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.075000	0.686567	
mm_106587.1	chr11	120729625	120729825	-	1	NA	NA	NA	2296	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.040000	0.577114	
mm_160646.1	chr9	110115499	110115699	-	1	NA	NA	NA	-17	NM_133347	72831	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	0.005000	0.442786	-78(CTTTTTAAAGTT,+,0.00),63(CAGTTTAAAAGC,-,0.00)
mm_67039.1	chr7	67222323	67222523	-	1	NA	NA	NA	35	NR_131044	76628	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0.040000	0.621891	
mm_91831.1	chr10	56982034	56982234	-	1	NA	NA	NA	504219	NR_045353	74928	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	0.000000	0.402985	0(GTGTTTTAAAAC,-,0.00)
mm_164494.1	chr16	90747220	90747420	+	1	NA	NA	NA	8996	NM_029844	77037	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.020000	0.507463	
mm_110170.1	chr12	27336322	27336522	-	1	NA	NA	NA	6296	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.005000	0.437811	
mm_158270.1	chrX	109623100	109623300	-	1	NA	NA	NA	426444	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.005000	0.278607	
mm_38311.1	chr4	137015031	137015231	-	1	NA	NA	NA	33564	NM_198248	230848	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	0.010000	0.358209	-87(ACTTTAATAGCG,+,0.00)
mm_119026.1	chr14	30015387	30015587	+	1	NA	NA	NA	-5816	NM_172264	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.000000	0.348259	
mm_21074.1	chr2	152830388	152830588	-	1	NA	NA	NA	229	NM_001289716	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.055000	0.522388	
mm_167757.1	chr9	110422380	110422580	-	1	NA	NA	NA	2672	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.005000	0.517413	
mm_80034.1	chr9	68824685	68824885	+	1	NA	NA	NA	59439	NR_033299	320440	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.005000	0.422886	43(CCATATATACAC,+,0.00)
mm_19547.1	chr2	98663786	98663986	-	1	NA	NA	NA	1196229	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.015000	0.348259	
mm_66737.1	chr7	46672291	46672491	-	1	NA	NA	NA	146	NM_009414	21990	Mm.248684	NM_009414	ENSMUSG00000040046	Tph1	Tph	tryptophan hydroxylase 1	protein-coding	0.020000	0.502488	
mm_12427.1	chr2	70563462	70563662	+	1	NA	NA	NA	-205	NR_040496	68986	Mm.437697	NR_040496	ENSMUSG00000087264	Gad1os	1500002O10Rik	glutamate decarboxylase 1, opposite strand	ncRNA	0.080000	0.696517	
mm_18141.1	chr2	45056704	45056904	-	1	NA	NA	NA	-33627	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.000000	0.303483	-56(CCCTTTATAGCC,+,0.00)
mm_68854.1	chr7	126369389	126369589	-	1	NA	NA	NA	79	NM_010689	16797	Mm.10280	NM_010689	ENSMUSG00000030742	Lat	p36-38|pp36	linker for activation of T cells	protein-coding	0.040000	0.641791	
mm_98487.1	chr11	94951149	94951349	+	1	NA	NA	NA	15025	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.045000	0.582090	
mm_48096.1	chr5	137062557	137062757	-	1	NA	NA	NA	9615	NM_008871	18787	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.015000	0.477612	
mm_113885.1	chr13	49188062	49188262	+	1	NA	NA	NA	615	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.045000	0.562189	
mm_66981.1	chr7	63938487	63938687	-	1	NA	NA	NA	328	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.130000	0.751244	
mm_25906.1	chr3	131112426	131112626	+	1	NA	NA	NA	-265	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.095000	0.641791	
mm_22297.1	chr2	180273395	180273595	-	1	NA	NA	NA	-30	NM_145851	252966	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0.155000	0.741294	
mm_152551.1	chr19	11393127	11393327	-	1	NA	NA	NA	-14434	NM_029499	64380	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	0.000000	0.422886	-50(CTCTTTAGGGGG,+,0.00)
mm_87959.1	chr10	63243880	63244080	+	1	NA	NA	NA	183	NM_026101	67345	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0.115000	0.696517	
mm_92355.1	chr10	75921310	75921510	-	1	NA	NA	NA	204	NM_011418	20587	Mm.279751	NM_011418	ENSMUSG00000000902	Smarcb1	AU020204|Baf47|Ini1|SNF5/INI1|Snf5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding	0.100000	0.646766	
mm_74716.1	chr8	17354796	17354996	-	1	NA	NA	NA	180489	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.000000	0.318408	
mm_170781.1	chr2	172509625	172509825	-	1	NA	NA	NA	37171	NM_029608	76426	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	0.050000	0.537313	
mm_111331.1	chr12	86726357	86726557	-	1	NA	NA	NA	3	NM_144524	68737	Mm.63979	NM_144524	ENSMUSG00000021257	Angel1	1110030H02Rik|mKIAA0759	angel homolog 1	protein-coding	0.090000	0.726368	
mm_34722.1	chr4	152177848	152178048	+	1	NA	NA	NA	-152	NM_133348	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.175000	0.771144	
mm_15649.1	chr2	163122513	163122713	+	1	NA	NA	NA	-33012	NM_026630	68236	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	0.025000	0.572139	
mm_68043.1	chr7	101362716	101362916	-	1	NA	NA	NA	14747	NM_001040111	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.015000	0.537313	
mm_26746.1	chr3	7606442	7606642	-	1	NA	NA	NA	6351	NM_001313890	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.020000	0.557214	
mm_104975.1	chr11	100207559	100207759	-	1	NA	NA	NA	-149	NM_001313956	16664	Mm.439898	NM_016958	ENSMUSG00000045545	Krt14	AI626930|CK-14|K14|Krt-1.14|Krt1-14	keratin 14	protein-coding	0.040000	0.572139	
mm_152157.1	chr19	7261334	7261534	-	1	NA	NA	NA	-5960	NM_054048	104383	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.005000	0.457711	
mm_116723.1	chr13	51702084	51702284	-	1	NA	NA	NA	50476	NM_029279	75420	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.015000	0.328358	
mm_66245.1	chr7	35555787	35555987	-	1	NA	NA	NA	41	NM_033080	110959	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	0.065000	0.601990	11(ACATTTATAGGG,+,0.00)
mm_48303.1	chr5	138272702	138272902	-	1	NA	NA	NA	10	NM_001347507	330217	Mm.332774	NM_001033416	ENSMUSG00000075593	Gal3st4	1500031A01Rik	galactose-3-O-sulfotransferase 4	protein-coding	0.020000	0.577114	
mm_153898.1	chr19	47050769	47050969	-	1	NA	NA	NA	37	NM_027654	71041	Mm.35413	NM_027654	ENSMUSG00000025050	Pcgf6	4933407A11Rik|AI604840|MBLR|Rnf134	polycomb group ring finger 6	protein-coding	0.115000	0.661692	
mm_26905.1	chr3	19311264	19311464	-	1	NA	NA	NA	-42	NM_001122759	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.180000	0.786070	
mm_156591.1	chrX	152194148	152194348	+	1	NA	NA	NA	15239	NM_001005475	245666	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	0.005000	0.502488	
mm_127535.1	chr15	102104253	102104453	+	1	NA	NA	NA	1365	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.020000	0.547264	
mm_140354.1	chr17	86831264	86831464	+	1	NA	NA	NA	77500	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.005000	0.368159	
mm_52267.1	chr6	108472938	108473138	+	1	NA	NA	NA	-16705	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.005000	0.437811	
mm_171533.1	chr4	146750572	146750772	-	1	NA	NA	NA	-203799	NR_045468	67524	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	0.030000	0.437811	
mm_158397.1	chrX	136741341	136741541	-	1	NA	NA	NA	-89	NM_001168226	56397	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	0.040000	0.542289	
mm_81908.1	chr9	120002279	120002479	+	1	NA	NA	NA	-17721	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.050000	0.582090	
mm_99414.1	chr11	102284883	102285083	+	1	NA	NA	NA	44	NM_001302505	72053	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	0.050000	0.537313	
mm_140849.1	chr17	23677344	23677544	-	1	NA	NA	NA	5	NM_001161746	27279	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	0.110000	0.716418	
mm_44357.1	chr5	17795592	17795792	-	1	NA	NA	NA	40204	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.318408	
mm_65445.1	chr7	25395483	25395683	-	1	NA	NA	NA	404	NM_010719	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.070000	0.577114	
mm_35761.1	chr4	45826869	45827069	-	1	NA	NA	NA	-142	NM_018741	75426	Mm.3919	NM_018741	ENSMUSG00000035551	Igfbpl1	2810011G06Rik|2810453O06Rik|IGFBPL	insulin-like growth factor binding protein-like 1	protein-coding	0.090000	0.651741	-83(CATTTTAAGGCC,+,0.00)
mm_116042.1	chr13	27245767	27245967	-	1	NA	NA	NA	3437	NM_008865	18776	Mm.37203	NM_008865	ENSMUSG00000038891	Prl3b1	Csh2|Ghd8|PL|Pl-2|Pl2|mPL-II|mplII	prolactin family 3, subfamily b, member 1	protein-coding	0.005000	0.427861	
mm_5420.1	chr1	33907755	33907955	-	1	NA	NA	NA	-88	NM_001310484	320705	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.180000	0.820896	
mm_133085.1	chr16	62814595	62814795	+	1	NA	NA	NA	19	NM_026588	68159	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	0.020000	0.462687	
mm_54857.1	chr6	42593901	42594101	-	1	NA	NA	NA	3371	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.020000	0.502488	
mm_3101.1	chr1	134432104	134432304	+	1	NA	NA	NA	16540	NM_001306069	72674	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.015000	0.333333	54(AGCTTTAAAAAG,-,0.00)
mm_46895.1	chr5	114091107	114091307	-	1	NA	NA	NA	173	NM_026805	68666	Mm.63584	NM_026805	ENSMUSG00000042078	Svop	1110030H18Rik|AI415691|msvop	SV2 related protein	protein-coding	0.070000	0.666667	
mm_72237.1	chr8	74935639	74935839	+	1	NA	NA	NA	-57911	NM_001316753	70823	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0.030000	0.517413	-5(CACTATAAAGGA,-,0.00),38(CCTTTTCTAGCT,+,0.00)
mm_161216.1	chr13	67099172	67099372	-	1	NA	NA	NA	-1296	NM_001012325	432769	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding	0.005000	0.268657	
mm_143520.1	chr17	73399196	73399396	-	1	NA	NA	NA	0	NM_001033444	381122	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0.005000	0.517413	-33(ACCTATATAAGG,-,0.00)
mm_21447.1	chr2	160367846	160368046	-	1	NA	NA	NA	-881	NM_010658	16658	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.035000	0.517413	
mm_84944.1	chr9	82975614	82975814	-	1	NA	NA	NA	-225	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.110000	0.681592	
mm_149236.1	chr19	10182943	10183143	+	1	NA	NA	NA	155	NM_146094	76267	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0.125000	0.731343	
mm_33458.1	chr4	130792214	130792414	+	1	NA	NA	NA	-223	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.065000	0.651741	
mm_163365.1	chr12	33279350	33279550	-	1	NA	NA	NA	-23065	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.005000	0.457711	-84(TCCTTTTAAAGG,-,0.00),-83(CCTTTTAAAGGA,+,0.00)
mm_173193.1	chrX	62197471	62197671	+	1	NA	NA	NA	-85928	NM_001199997	74437	Mm.85792	NM_001199996	ENSMUSG00000045330	4933402E13Rik	-	RIKEN cDNA 4933402E13 gene	protein-coding	0.060000	0.651741	
mm_10781.1	chr2	24336788	24336988	+	1	NA	NA	NA	28	NM_031167	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.005000	0.547264	17(TCCTTTATACAC,+,0.00)
mm_88192.1	chr10	70060091	70060291	+	1	NA	NA	NA	-36930	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.035000	0.567164	
mm_102427.1	chr11	59449894	59450094	-	1	NA	NA	NA	-38	NM_144521	67826	Mm.26680	NM_144521	ENSMUSG00000009894	Snap47	1110031B06Rik|SNAP-47	synaptosomal-associated protein, 47	protein-coding	0.105000	0.696517	
mm_121636.1	chr14	8378603	8378803	-	1	NA	NA	NA	60	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.005000	0.572139	46(GGCCAGAAAAGC,-,0.00)
mm_122637.1	chr14	51146685	51146885	-	1	NA	NA	NA	-18	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.010000	0.388060	-13(CCTTTTAAACTC,+,0.00)
mm_36510.1	chr4	83486327	83486527	-	1	NA	NA	NA	21	NM_001290527	101739	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	0.165000	0.761194	
mm_152282.1	chr19	8880806	8881006	-	1	NA	NA	NA	27	NM_001160356	107197	Mm.381181	NM_001160356	ENSMUSG00000071654	Uqcc3	AI462493|Cbp4	ubiquinol-cytochrome c reductase complex assembly factor 3	protein-coding	0.065000	0.592040	
mm_34744.1	chr4	152296073	152296273	+	1	NA	NA	NA	-1041	NR_037908	57295	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|OTTMUSG00000010406|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	0.020000	0.522388	
mm_78006.1	chr9	12059795	12059995	+	1	NA	NA	NA	1045960	NR_040755	78219	Mm.414868	NR_040755	ENSMUSG00000111830	4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA	0.000000	0.258706	
mm_52209.1	chr6	101198433	101198633	+	1	NA	NA	NA	179364	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.020000	0.487562	18(CGCTCTATAGAG,-,0.00),20(CTCTATAGAGCG,+,0.00)
mm_1881.1	chr1	85649948	85650148	+	1	NA	NA	NA	60	NM_001313714	20684	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.015000	0.567164	
mm_96237.1	chr11	62551628	62551828	+	1	NA	NA	NA	-3	NM_001313984	22187	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.110000	0.641791	
mm_60455.1	chr7	44477489	44477689	+	1	NA	NA	NA	-6928	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.010000	0.402985	
mm_166693.1	chr6	113669994	113670194	+	1	NA	NA	NA	-26956	NM_001347356	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.025000	0.557214	-34(AGGCTTAAAAGG,-,0.00)
mm_3313.1	chr1	137905992	137906192	+	1	NA	NA	NA	-60363	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.000000	0.398010	7(TTGTTTAAAAGA,-,0.00)
mm_89223.1	chr10	87205876	87206076	+	1	NA	NA	NA	147930	NM_029685	76640	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding	0.000000	0.482587	
mm_84816.1	chr9	77544642	77544842	-	1	NA	NA	NA	110	NM_001146048	214345	Mm.28534	NM_172528	ENSMUSG00000032352	Lrrc1	A430093J20Rik|AU016091|D030059I21|mKIAA4018	leucine rich repeat containing 1	protein-coding	0.170000	0.766169	
mm_139916.1	chr17	70963712	70963912	+	1	NA	NA	NA	26704	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.055000	0.557214	
mm_158408.1	chrX	136868472	136868672	-	1	NA	NA	NA	-32	NM_176971	319642	Mm.44557	NM_176971	ENSMUSG00000043463	Rab9b	9330195C02Rik	RAB9B, member RAS oncogene family	protein-coding	0.110000	0.756219	
mm_7974.1	chr1	134063260	134063460	-	1	NA	NA	NA	15795	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.055000	0.661692	-74(TCCTTTATGGGG,+,0.00)
mm_54794.1	chr6	41680637	41680837	-	1	NA	NA	NA	-14	NM_001007572	194352	Mm.135734	NM_001007572	ENSMUSG00000036899	Trpv5	CAT2|D630033B11|ECAC1	transient receptor potential cation channel, subfamily V, member 5	protein-coding	0.010000	0.432836	
mm_5607.1	chr1	39580799	39580999	-	1	NA	NA	NA	-3552	NM_001033135	67702	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4|OTTMUSG00000026591	ring finger protein 149	protein-coding	0.005000	0.383085	
mm_48231.1	chr5	137684652	137684852	-	1	NA	NA	NA	1	NM_001303271	231801	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	0.085000	0.651741	
mm_104335.1	chr11	93997136	93997336	-	1	NA	NA	NA	1145	NM_027569	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.020000	0.462687	
mm_110797.1	chr12	72184912	72185112	-	1	NA	NA	NA	17	NM_028687	73936	Mm.475741	NM_028687	ENSMUSG00000021086	Ccdc175	4930403N07Rik	coiled-coil domain containing 175	protein-coding	0.050000	0.587065	
mm_118295.1	chr13	113079010	113079210	-	1	NA	NA	NA	21871	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.020000	0.467662	
mm_45956.1	chr5	90462719	90462919	-	1	NA	NA	NA	1949	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.020000	0.452736	
mm_38226.1	chr4	135987996	135988196	-	1	NA	NA	NA	-852	NM_025411	66193	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	0.020000	0.517413	-19(TCACATAAAAGC,-,0.00)
mm_37151.1	chr4	117120362	117120562	-	1	NA	NA	NA	5263	NR_024078	78611	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0.055000	0.517413	
mm_56065.1	chr6	86783430	86783630	-	1	NA	NA	NA	-8416	NM_001331120	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.030000	0.522388	
mm_113478.1	chr13	36857472	36857672	+	1	NA	NA	NA	-123095	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.020000	0.472637	
mm_123940.1	chr14	73370617	73370817	-	1	NA	NA	NA	14554	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.025000	0.427861	
mm_3602.1	chr1	151572143	151572343	+	1	NA	NA	NA	870	NM_022018	63913	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.010000	0.432836	
mm_155848.1	chrX	101273953	101274153	+	1	NA	NA	NA	-38	NM_021521	59024	Mm.20873	NM_021521	ENSMUSG00000079487	Med12	230kDa|Mopa|OPA-1|Tnrc11|Trap230	mediator complex subunit 12	protein-coding	0.090000	0.656716	
mm_13863.1	chr2	119742219	119742419	+	1	NA	NA	NA	-18	NM_146125	228550	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	0.160000	0.820896	
mm_13639.1	chr2	114048043	114048243	+	1	NA	NA	NA	4732	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.015000	0.517413	
mm_90854.1	chr10	8814343	8814543	-	1	NA	NA	NA	71627	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.040000	0.472637	
mm_148008.1	chr18	68214415	68214615	-	1	NA	NA	NA	46458	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0.015000	0.477612	
mm_109907.1	chr12	8301912	8302112	-	1	NA	NA	NA	-58	NM_013527	238057	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	0.100000	0.691542	
mm_167344.1	chr8	79028259	79028459	+	1	NA	NA	NA	-78	NM_001294279	622675	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.075000	0.492537	
mm_171321.1	chr3	96328319	96328519	+	1	NA	NA	NA	-34450	NM_010186	14129	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0.070000	0.631841	
mm_18787.1	chr2	73660306	73660506	-	1	NA	NA	NA	17	NM_175752	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	0.025000	0.517413	
mm_22225.1	chr2	174428571	174428771	-	1	NA	NA	NA	10368	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.030000	0.507463	
mm_105517.1	chr11	106272660	106272860	-	1	NA	NA	NA	212	NM_001130187	83796	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	0.135000	0.666667	
mm_167031.1	chr7	70354111	70354311	-	1	NA	NA	NA	6382	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.000000	0.273632	
mm_60492.1	chr7	44478582	44478782	+	1	NA	NA	NA	-5835	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.472637	
mm_15279.1	chr2	155276245	155276445	+	1	NA	NA	NA	-19	NM_025735	66734	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0.105000	0.651741	71(TCCCCTTTAAGG,-,0.00),73(CCCTTTAAGGAA,+,0.00)
mm_28311.1	chr3	89245076	89245276	-	1	NA	NA	NA	23	NM_001039466	360213	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.035000	0.656716	
mm_114082.1	chr13	54577810	54578010	+	1	NA	NA	NA	2897	NM_019968	56795	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0.040000	0.572139	
mm_87171.1	chr10	37315288	37315488	+	1	NA	NA	NA	-176462	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.010000	0.447761	
mm_42485.1	chr5	115470803	115471003	+	1	NA	NA	NA	4637	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.040000	0.611940	
mm_55599.1	chr6	71633254	71633454	-	1	NA	NA	NA	-437	NM_001038695	104263	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0.070000	0.597015	
mm_97771.1	chr11	82057751	82057951	+	1	NA	NA	NA	19	NM_011330	20292	Mm.4686	NM_011330	ENSMUSG00000020676	Ccl11	Scya11|eotaxin	chemokine (C-C motif) ligand 11	protein-coding	0.010000	0.512438	34(CTCCCTATAAAG,-,0.00),36(CCCTATAAAGCT,+,0.00)
mm_160911.1	chr11	82911698	82911898	+	1	NA	NA	NA	545	NM_178680	217012	Mm.295205	NM_178680	ENSMUSG00000018845	Unc45b	AA445617|Cmya4|D230041A13Rik|Unc45	unc-45 myosin chaperone B	protein-coding	0.030000	0.597015	
mm_123620.1	chr14	68120879	68121079	-	1	NA	NA	NA	-2773	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.010000	0.527363	
mm_51004.1	chr6	63746465	63746665	+	1	NA	NA	NA	489708	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.000000	0.363184	
mm_63731.1	chr7	130867420	130867620	+	1	NA	NA	NA	1610	NM_133942	101476	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.015000	0.442786	
mm_135051.1	chr16	33380636	33380836	-	1	NA	NA	NA	0	NR_045709	100502742	Mm.217880	NR_045709	ENSMUSG00000097318	1700007L15Rik	linc-Iqcg|linc1609	RIKEN cDNA 1700007L15 gene	ncRNA	0.135000	0.701493	
mm_84131.1	chr9	59036187	59036387	-	1	NA	NA	NA	154	NM_008684	18007	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0.115000	0.756219	
mm_68803.1	chr7	125491336	125491536	-	1	NA	NA	NA	106	NM_026330	67711	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.090000	0.646766	
mm_12025.1	chr2	58160093	58160293	+	1	NA	NA	NA	-71	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.020000	0.462687	14(GCCTATAGAGGA,+,0.00)
mm_34721.1	chr4	152177720	152177920	+	1	NA	NA	NA	-280	NM_133348	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.175000	0.786070	
mm_144876.1	chr18	36760153	36760353	+	1	NA	NA	NA	14	NM_026464	67936	Mm.271719	NM_026464	ENSMUSG00000042660	Wdr55	2410080P20Rik|C80692	WD repeat domain 55	protein-coding	0.055000	0.582090	
mm_171532.1	chr4	146750515	146750715	-	1	NA	NA	NA	-203742	NR_045468	67524	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	0.050000	0.522388	
mm_11965.1	chr2	53192015	53192215	+	1	NA	NA	NA	31	NM_022989	65103	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	0.135000	0.696517	
mm_100163.1	chr11	116434111	116434311	+	1	NA	NA	NA	-2	NR_003376	664849	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	0.175000	0.786070	
mm_7920.1	chr1	133800881	133801081	-	1	NA	NA	NA	-47234	NM_213616	381290	Mm.188617	NM_213616	ENSMUSG00000026463	Atp2b4	Pmca4	ATPase, Ca++ transporting, plasma membrane 4	protein-coding	0.040000	0.631841	
mm_103631.1	chr11	78945176	78945376	-	1	NA	NA	NA	19985	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.567164	
mm_60945.1	chr7	46983526	46983726	+	1	NA	NA	NA	6994	NR_033461	629141	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	ENSMUSG00000056509	predicted gene 9999	ncRNA	0.020000	0.457711	
mm_33349.1	chr4	129335929	129336129	+	1	NA	NA	NA	3	NM_025970	67106	Mm.36575	NM_025970	ENSMUSG00000057572	Zbtb8os	2010001H09Rik|2310028N13Rik|AI851226|Arch|Archm	zinc finger and BTB domain containing 8 opposite strand	protein-coding	0.050000	0.537313	-92(CCTTTTAGACCC,+,0.00)
mm_148672.1	chr19	5637651	5637851	+	1	NA	NA	NA	261	NM_009045	19697	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.165000	0.761194	
mm_101155.1	chr11	16972139	16972339	-	1	NA	NA	NA	20829	NM_176982	319701	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.010000	0.472637	
mm_72658.1	chr8	84856909	84857109	+	1	NA	NA	NA	23	NM_025648	66590	Mm.292517	NM_025648	ENSMUSG00000003808	Farsa	0610012A19Rik|Farsla	phenylalanyl-tRNA synthetase, alpha subunit	protein-coding	0.100000	0.626866	
mm_156525.1	chrX	150594333	150594533	+	1	NA	NA	NA	4512	NM_008824	18639	Mm.249131	NM_008824	ENSMUSG00000025271	Pfkfb1	PFK/FBPase 1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	protein-coding	0.015000	0.547264	
mm_146579.1	chr18	7583685	7583885	-	1	NA	NA	NA	43078	NM_001081287	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0.025000	0.477612	
mm_164961.1	chr19	5800068	5800268	-	1	NA	NA	NA	2504	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.025000	0.527363	
mm_102841.1	chr11	69364403	69364603	-	1	NA	NA	NA	4923	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.010000	0.522388	
mm_94834.1	chr11	23497702	23497902	+	1	NA	NA	NA	237	NM_001290655	268390	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	0.135000	0.766169	
mm_76902.1	chr8	105827499	105827699	-	1	NA	NA	NA	-145	NM_024445	72236	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	0.040000	0.547264	
mm_145992.1	chr18	68337411	68337611	+	1	NA	NA	NA	-92	NM_013596	17203	Mm.8003	NM_013596	ENSMUSG00000007480	Mc5r	-	melanocortin 5 receptor	protein-coding	0.060000	0.606965	-33(CTGTTTAAAAGC,-,0.00)
mm_74140.1	chr8	123234991	123235191	+	1	NA	NA	NA	0	NR_045849	71186	Mm.449984	NR_045849	ENSMUSG00000097637	4933417D19Rik	-	RIKEN cDNA 4933417D19 gene	ncRNA	0.035000	0.587065	
mm_168137.1	chr10	29699276	29699476	-	1	NA	NA	NA	-163509	NM_028351	72780	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0.060000	0.502488	
mm_105301.1	chr11	102556047	102556247	-	1	NA	NA	NA	11	NM_001159492	237943	Mm.260282	NM_001159492	ENSMUSG00000034621	Gpatch8	5430405G24Rik|AU018890|ENSMUSG00000075516|Fbm1|Gpatc8|mKIAA0553	G patch domain containing 8	protein-coding	0.125000	0.691542	
mm_105261.1	chr11	102356800	102357000	-	1	NA	NA	NA	8381	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.060000	0.562189	
mm_3259.1	chr1	136259311	136259511	+	1	NA	NA	NA	1462	NM_001101516	383563	Mm.40367	NM_001101516	ENSMUSG00000052759	Gpr25	Gm1300	G protein-coupled receptor 25	protein-coding	0.000000	0.557214	
mm_160761.1	chr10	89660013	89660213	-	1	NA	NA	NA	26172	NM_198021	213326	Mm.27651	NM_198021	ENSMUSG00000069539	Scyl2	AU015688|AW536445|BC030932|CVAK104|D10Ertd802e	SCY1-like 2 (S. cerevisiae)	protein-coding	0.010000	0.293532	
mm_97288.1	chr11	76216240	76216440	+	1	NA	NA	NA	1232	NM_177367	276919	Mm.482713	NM_177367	ENSMUSG00000049396	Gemin4	4932415L08Rik|AU015359	gem (nuclear organelle) associated protein 4	protein-coding	0.000000	0.407960	
mm_78173.1	chr9	21136659	21136859	+	1	NA	NA	NA	-5484	NM_001205312	54721	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.005000	0.412935	
mm_169138.1	chr13	61532403	61532603	-	1	NA	NA	NA	9336	NM_022326	64139	Mm.279933	NM_022326	ENSMUSG00000074871	Ctsm	1600027J17Rik|AI324100|Catm	cathepsin M	protein-coding	0.040000	0.497512	
mm_4764.1	chr1	182458507	182458707	+	1	NA	NA	NA	49440	NM_173378	209456	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.020000	0.462687	-43(TCATTTATGGTC,+,0.00)
mm_118075.1	chr13	103038678	103038878	-	1	NA	NA	NA	278523	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.010000	0.442786	
mm_101631.1	chr11	36271768	36271968	-	1	NA	NA	NA	-291779	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.005000	0.542289	
mm_156943.1	chrX	169978970	169979170	+	1	NA	NA	NA	-153	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.015000	0.383085	-48(GTTTCTAAAAGC,-,0.00)
mm_141037.1	chr17	25273500	25273700	-	1	NA	NA	NA	-169	NM_001177610	22196	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|F830028O17Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	0.125000	0.686567	-43(GCCCCTTTAAGA,-,0.00),-40(CCTTTAAGAGTG,+,0.00)
mm_12885.1	chr2	84742830	84743030	+	1	NA	NA	NA	-1752	NR_029544	387149		NR_029544	ENSMUSG00000065484	Mir130a	Mirn130|Mirn130a|mir-130a	microRNA 130a	ncRNA	0.045000	0.611940	
mm_98121.1	chr11	87127118	87127318	+	1	NA	NA	NA	143	NM_197987	68729	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.135000	0.706468	
mm_148017.1	chr18	68429147	68429347	-	1	NA	NA	NA	73	NM_001301372	17200	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	0.015000	0.407960	
mm_145163.1	chr18	46630811	46631011	+	1	NA	NA	NA	33207	NM_010120	13664	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.005000	0.383085	
mm_5891.1	chr1	54396848	54397048	-	1	NA	NA	NA	42078	NM_001033194	98488	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0.010000	0.378109	
mm_15704.1	chr2	163995141	163995341	+	1	NA	NA	NA	44	NM_018753	54401	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	0.135000	0.751244	
mm_63683.1	chr7	130552921	130553121	+	1	NA	NA	NA	-5640	NM_001162855	67872	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0.020000	0.522388	
mm_95587.1	chr11	53300719	53300919	+	1	NA	NA	NA	-340	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.060000	0.492537	-17(TTTTTTAAGGCC,+,0.00)
mm_84009.1	chr9	57645067	57645267	-	1	NA	NA	NA	486	NM_007783	12988	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.060000	0.706468	
mm_93798.1	chr10	120898428	120898628	-	1	NA	NA	NA	443	NM_177092	320183	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	0.140000	0.761194	
mm_149541.1	chr19	12564400	12564600	+	1	NA	NA	NA	-9010	NM_001346545	107373	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	0.000000	0.398010	
mm_141336.1	chr17	28509946	28510146	-	1	NA	NA	NA	-20815	NM_026290	67645	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.000000	0.437811	-78(GGCTCTAAAGGT,-,0.00)
mm_40327.1	chr5	43910428	43910628	+	1	NA	NA	NA	41719	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.000000	0.338308	
mm_102437.1	chr11	59506462	59506662	-	1	NA	NA	NA	78	NM_001291014	268417	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0.075000	0.686567	
mm_29157.1	chr3	106032784	106032984	-	1	NA	NA	NA	11	NM_001080816	229687	Mm.39224	NM_170594	ENSMUSG00000043873	Chil5	Bclp|Bclp1|Bclp2|Chi3l7	chitinase-like 5	protein-coding	0.005000	0.407960	23(TTTTAAAAAGCC,+,0.00)
mm_15321.1	chr2	155750687	155750887	+	1	NA	NA	NA	-430	NM_011171	19124	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	0.015000	0.383085	
mm_170933.1	chr2	46296962	46297162	-	1	NA	NA	NA	600457	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.045000	0.452736	
mm_14274.1	chr2	128729198	128729398	+	1	NA	NA	NA	30301	NM_008587	17289	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.020000	0.572139	
mm_50463.1	chr6	48929794	48929994	+	1	NA	NA	NA	-2	NM_001081273	69761	Mm.333053	NM_001081273	ENSMUSG00000029813	1600015I10Rik	AI429442|Doxl1	RIKEN cDNA 1600015I10 gene	protein-coding	0.010000	0.447761	-33(GACTATAAGAGA,-,0.00)
mm_38007.1	chr4	133722910	133723110	-	1	NA	NA	NA	-5902	NR_106086	102465707		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	0.015000	0.487562	
mm_105886.1	chr11	114930625	114930825	-	1	NA	NA	NA	3661	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.020000	0.447761	
mm_124111.1	chr14	79470054	79470254	-	1	NA	NA	NA	-11040	NM_007920	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.015000	0.373134	
mm_123614.1	chr14	68120618	68120818	-	1	NA	NA	NA	-3034	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.015000	0.502488	
mm_123016.1	chr14	55107043	55107243	-	1	NA	NA	NA	-550	NM_007455	11766	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0.005000	0.562189	
mm_170743.1	chr2	154892715	154892915	-	1	NA	NA	NA	91	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.095000	0.611940	
mm_145549.1	chr18	60808944	60809144	+	1	NA	NA	NA	-3032	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.035000	0.567164	
mm_62155.1	chr7	97139868	97140068	+	1	NA	NA	NA	58217	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.000000	0.388060	
mm_152773.1	chr19	21170767	21170967	-	1	NA	NA	NA	66157	NR_126458	75354	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.000000	0.492537	
mm_125126.1	chr15	30172889	30173089	+	1	NA	NA	NA	396	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.155000	0.751244	
mm_98176.1	chr11	87756708	87756908	+	1	NA	NA	NA	-56	NR_029555	387160		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.025000	0.597015	-18(CTTTATTAAAGC,-,0.00)
mm_154469.1	chrM	3624	3824	-	1	NA	NA	NA	NA	NA									0.010000	0.328358	
mm_68053.1	chr7	101620546	101620746	-	1	NA	NA	NA	-39485	NM_019915	11872	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	0.015000	0.462687	
mm_136827.1	chr17	12614612	12614812	+	1	NA	NA	NA	30523	NM_013667	20518	Mm.17322	NM_013667	ENSMUSG00000040966	Slc22a2	Oct2|Orct2	solute carrier family 22 (organic cation transporter), member 2	protein-coding	0.020000	0.487562	
mm_169568.1	chr15	18144390	18144590	-	1	NA	NA	NA	225137	NR_045711	70886	Mm.399021	NR_045711		4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0.010000	0.512438	
mm_39817.1	chr5	30711777	30711977	+	1	NA	NA	NA	-18	NM_023047	65254	Mm.27732	NM_023047	ENSMUSG00000029168	Dpysl5	CRAM|CRMP-5|Crmp5	dihydropyrimidinase-like 5	protein-coding	0.135000	0.756219	
mm_97262.1	chr11	75764614	75764814	+	1	NA	NA	NA	-31095	NR_136933	102641247	Mm.411386	NR_136932		Gm12339	OTTMUSG00000006218	predicted gene 12339	ncRNA	0.010000	0.452736	
mm_117728.1	chr13	95534084	95534284	-	1	NA	NA	NA	-8944	NM_007974	14063	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	0.015000	0.582090	
mm_56766.1	chr6	116181419	116181619	-	1	NA	NA	NA	11855	NM_177412	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.005000	0.328358	43(AACTTTAAAAAC,-,0.00),45(CTTTAAAAACAC,+,0.00)
mm_65109.1	chr7	19309683	19309883	-	1	NA	NA	NA	262	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.095000	0.592040	
mm_89880.1	chr10	108332576	108332776	+	1	NA	NA	NA	487	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.165000	0.776119	
mm_131738.1	chr16	22009696	22009896	+	1	NA	NA	NA	312	NR_027488	75826	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.145000	0.771144	
mm_19817.1	chr2	110363069	110363269	-	1	NA	NA	NA	-176	NM_026271	67606	Mm.291809	NM_026271	ENSMUSG00000074971	Fibin	1110018M03Rik	fin bud initiation factor homolog (zebrafish)	protein-coding	0.025000	0.507463	
mm_133987.1	chr16	4624855	4625055	-	1	NA	NA	NA	-9	NM_025571	66449	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0.105000	0.701493	
mm_25500.1	chr3	109452877	109453077	+	1	NA	NA	NA	112294	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.010000	0.432836	
mm_12297.1	chr2	69091769	69091969	+	1	NA	NA	NA	-43931	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.030000	0.467662	
mm_81018.1	chr9	104263183	104263383	+	1	NA	NA	NA	-353	NM_001163026	235567	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.050000	0.567164	
mm_112872.1	chr13	20853533	20853733	+	1	NA	NA	NA	59520	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.402985	
mm_114732.1	chr13	83727279	83727479	+	1	NA	NA	NA	-727	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.080000	0.731343	
mm_135305.1	chr16	38712734	38712934	-	1	NA	NA	NA	201	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.140000	0.771144	
mm_23534.1	chr3	60631601	60631801	+	1	NA	NA	NA	130522	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.000000	0.318408	
mm_104958.1	chr11	100141742	100141942	-	1	NA	NA	NA	1857	NM_001313963	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.010000	0.527363	
mm_91843.1	chr10	57532403	57532603	-	1	NA	NA	NA	26	NM_019760	56442	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	0.100000	0.626866	39(GCCCAGAAAAAG,-,0.00)
mm_82304.1	chr9	7867953	7868153	-	1	NA	NA	NA	5117	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.020000	0.557214	
mm_117148.1	chr13	61164113	61164313	-	1	NA	NA	NA	-25	NM_020284	56835	Mm.315715	NM_020284	ENSMUSG00000055679	Ctsr	AI428350	cathepsin R	protein-coding	0.000000	0.492537	
mm_166484.1	chr5	146661826	146662026	-	1	NA	NA	NA	-76687	NM_001010941	14738	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	0.030000	0.547264	
mm_142520.1	chr17	46282388	46282588	-	1	NA	NA	NA	538	NM_001252475	74094	Mm.284594	NM_028751	ENSMUSG00000012296	Tjap1	0610041D19Rik|AI415281|AW121008|Pilt|Tjp4	tight junction associated protein 1	protein-coding	0.035000	0.582090	
mm_116293.1	chr13	36117149	36117349	-	1	NA	NA	NA	108	NM_201358	380840	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	0.040000	0.442786	
mm_54046.1	chr6	13677852	13678052	-	1	NA	NA	NA	14	NM_175312	101148	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	0.085000	0.701493	
mm_11279.1	chr2	30062434	30062634	+	1	NA	NA	NA	538	NM_023871	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.050000	0.621891	
mm_28249.1	chr3	88509868	88510068	-	1	NA	NA	NA	-6616	NM_001002011	16905	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.035000	0.597015	
mm_55833.1	chr6	83125042	83125242	-	1	NA	NA	NA	-113	NM_023547	70020	Mm.27814	NM_023547	ENSMUSG00000030034	Ino80b	2510009I23Rik|HMG1YL4|Hmga1l4|Papa1|Znhit4	INO80 complex subunit B	protein-coding	0.075000	0.572139	
mm_131563.1	chr16	18127576	18127776	+	1	NA	NA	NA	-30	NM_022982	65079	Mm.40149	NM_022982	ENSMUSG00000043811	Rtn4r	NOGOR|NgR|NgR1	reticulon 4 receptor	protein-coding	0.160000	0.761194	
mm_85219.1	chr9	96984141	96984341	-	1	NA	NA	NA	34114	NM_145134	211949	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0.030000	0.552239	
mm_76559.1	chr8	88362133	88362333	-	1	NA	NA	NA	-42	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.145000	0.771144	
mm_95461.1	chr11	50381428	50381628	+	1	NA	NA	NA	3809	NM_001347487	59013	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.020000	0.502488	
mm_89913.1	chr10	111176344	111176544	+	1	NA	NA	NA	11642	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.000000	0.353234	
mm_34966.1	chr4	156008587	156008787	+	1	NA	NA	NA	-5008	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.015000	0.512438	
mm_37838.1	chr4	132059066	132059266	-	1	NA	NA	NA	-10088	NM_001128606	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.035000	0.527363	
mm_161709.1	chr17	24889898	24890098	+	1	NA	NA	NA	2517	NM_027141	79043	Mm.274794	NM_027141	ENSMUSG00000024160	Spsb3	2310012N15Rik|3300001M01Rik|SSB3|Tce1|mKIAA4204	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding	0.000000	0.547264	
mm_36829.1	chr4	106167748	106167948	-	1	NA	NA	NA	-148365	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.010000	0.527363	
mm_151748.1	chr19	5072410	5072610	-	1	NA	NA	NA	4432	NM_054042	70445	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.045000	0.522388	
mm_111996.1	chr12	110696214	110696414	-	1	NA	NA	NA	81	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.110000	0.671642	-29(CTCTATATAAGG,-,0.00),-27(CTATATAAGGCC,+,0.00)
mm_33109.1	chr4	124724673	124724873	+	1	NA	NA	NA	-6921	NR_030479	735277		NR_030479	ENSMUSG00000076271	Mir697	Mirn697|mmu-mir-697	microRNA 697	ncRNA	0.005000	0.442786	
mm_8510.1	chr1	154726282	154726482	-	1	NA	NA	NA	-462	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.020000	0.447761	
mm_89117.1	chr10	84756057	84756257	+	1	NA	NA	NA	109	NM_001024918	71137	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.060000	0.537313	
mm_81663.1	chr9	111020852	111021052	+	1	NA	NA	NA	1660	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.025000	0.502488	
mm_172972.1	chr9	90118791	90118991	+	1	NA	NA	NA	-4071	NM_024431	21761	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.055000	0.532338	
mm_81394.1	chr9	108989743	108989943	+	1	NA	NA	NA	-2059	NM_173019	270198	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0.010000	0.572139	
mm_157482.1	chrX	48208432	48208632	-	1	NA	NA	NA	170	NM_172465	208884	Mm.207367	NM_172465	ENSMUSG00000036985	Zdhhc9	6430508G22|9530098M12Rik	zinc finger, DHHC domain containing 9	protein-coding	0.040000	0.646766	
mm_170704.1	chr2	138040050	138040250	+	1	NA	NA	NA	-216434	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.045000	0.492537	-39(CTCCTTAAGAGG,-,0.00)
mm_103612.1	chr11	78536142	78536342	-	1	NA	NA	NA	18	NM_001159392	21927	Mm.386774	NM_009395	ENSMUSG00000017615	Tnfaip1	Bacurd2|Edp-1|Edp1|Tnfip1	tumor necrosis factor, alpha-induced protein 1 (endothelial)	protein-coding	0.080000	0.587065	
mm_18768.1	chr2	73485621	73485821	-	1	NA	NA	NA	32	NM_001289723	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.025000	0.542289	-11(CGGTTTAAGAGG,-,0.00)
mm_149416.1	chr19	11426196	11426396	+	1	NA	NA	NA	-17262	NM_021718	60361	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	0.005000	0.427861	
mm_4646.1	chr1	180294633	180294833	+	1	NA	NA	NA	-35743	NM_001081175	320404	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0.020000	0.482587	
mm_67565.1	chr7	81903925	81904125	-	1	NA	NA	NA	30434	NM_013886	29877	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfrp3	2700022B06Rik|HRP-3	hepatoma-derived growth factor, related protein 3	protein-coding	0.005000	0.308458	
mm_20925.1	chr2	150855575	150855775	-	1	NA	NA	NA	49056	NM_024465	76192	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.000000	0.402985	
mm_156180.1	chrX	130461461	130461661	+	1	NA	NA	NA	711819	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.005000	0.353234	
mm_106113.1	chr11	116335258	116335458	-	1	NA	NA	NA	-4	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.105000	0.681592	
mm_145678.1	chr18	61576077	61576277	+	1	NA	NA	NA	20595	NM_146087	93687	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0.020000	0.388060	80(ACTTTTAGAGCG,+,0.00)
mm_65380.1	chr7	25090682	25090882	-	1	NA	NA	NA	6393	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.025000	0.552239	42(AGCTTTAAAAGA,-,0.00),43(GCTTTAAAAGAA,+,0.00)
mm_165255.1	chr2	72479981	72480181	+	1	NA	NA	NA	3862	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.040000	0.557214	
mm_34906.1	chr4	155694243	155694443	+	1	NA	NA	NA	1	NM_178699	230991	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	0.140000	0.766169	
mm_140000.1	chr17	72941501	72941701	+	1	NA	NA	NA	23296	NM_029999	77889	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.010000	0.606965	
mm_106657.1	chr11	121204854	121205054	-	1	NA	NA	NA	-306	NM_025402	66179	Mm.390403	NM_025402	ENSMUSG00000025169	Ogfod3	1110031I02Rik	2-oxoglutarate and iron-dependent oxygenase domain containing 3	protein-coding	0.050000	0.631841	
mm_28457.1	chr3	90682659	90682859	-	1	NA	NA	NA	12962	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.000000	0.447761	
mm_40286.1	chr5	43233599	43233799	+	1	NA	NA	NA	236	NM_001177379	231207	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.120000	0.741294	
mm_162912.1	chr10	119665045	119665245	+	1	NA	NA	NA	96554	NR_045359	75321	Mm.402041	NR_045359	ENSMUSG00000084764	Grip1os2	4930564G21Rik	glutamate receptor interacting protein 1, opposite strand 2	ncRNA	0.000000	0.393035	
mm_123475.1	chr14	65975604	65975804	-	1	NA	NA	NA	7221	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.055000	0.587065	
mm_87378.1	chr10	44599742	44599942	+	1	NA	NA	NA	-141094	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.020000	0.457711	-99(CACCCTAAAAGA,-,0.00)
mm_72914.1	chr8	91069988	91070188	+	1	NA	NA	NA	31	NM_001282000	19651	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	retinoblastoma-like 2	protein-coding	0.090000	0.676617	
mm_88891.1	chr10	81137886	81138086	+	1	NA	NA	NA	1715	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.170000	0.800995	
mm_105560.1	chr11	106488327	106488527	-	1	NA	NA	NA	-631	NM_023913	78943	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.030000	0.512438	
mm_136353.1	chr16	92697231	92697431	-	1	NA	NA	NA	-2	NM_009821	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.090000	0.641791	
mm_23781.1	chr3	79237817	79238017	+	1	NA	NA	NA	24998	NR_045502	70924	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0.000000	0.452736	
mm_103473.1	chr11	76494317	76494517	-	1	NA	NA	NA	78	NM_001346670	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.045000	0.631841	
mm_5381.1	chr1	30949815	30950015	-	1	NA	NA	NA	-160	NM_011200	19243	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	0.140000	0.711443	
mm_39191.1	chr4	155943519	155943719	-	1	NA	NA	NA	-194	NM_001039158	140499	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	0.055000	0.587065	
mm_111166.1	chr12	83597016	83597216	-	1	NA	NA	NA	31	NM_183154	217695	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0.045000	0.626866	
mm_2372.1	chr1	93238771	93238971	+	1	NA	NA	NA	2974	NM_172463	208777	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	0.005000	0.487562	
mm_7379.1	chr1	107138510	107138710	-	1	NA	NA	NA	22504	NM_198680	383548	Mm.483991	NM_198680	ENSMUSG00000073602	Serpinb3b	Scca2-rs|Scca2-rs1	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 3B	protein-coding	0.015000	0.402985	
mm_134078.1	chr16	8694963	8695163	-	1	NA	NA	NA	14293	NM_001324517	436336	Mm.357666	NM_001324517		Gm5767	EG436336	predicted gene 5767	protein-coding	0.025000	0.452736	
mm_164396.1	chr16	33807772	33807972	+	1	NA	NA	NA	13835	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.025000	0.447761	
mm_150218.1	chr19	33391720	33391920	+	1	NA	NA	NA	475	NM_001167818	67795	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	0.075000	0.656716	
mm_132381.1	chr16	34921743	34921943	+	1	NA	NA	NA	17486	NR_040536	76649	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.045000	0.577114	
mm_43050.1	chr5	124112225	124112425	+	1	NA	NA	NA	-13	NM_025671	66627	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	0.125000	0.681592	
mm_57071.1	chr6	122577956	122578156	-	1	NA	NA	NA	24247	NM_009645	11628	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.005000	0.373134	
mm_38770.1	chr4	147910673	147910873	-	1	NA	NA	NA	-5864	NM_001285921	170731	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0.065000	0.601990	
mm_20256.1	chr2	126597959	126598159	-	1	NA	NA	NA	20619	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.010000	0.497512	
mm_64952.1	chr7	16387756	16387956	-	1	NA	NA	NA	40	NM_001285892	56459	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	0.120000	0.676617	
mm_53718.1	chr6	143409583	143409783	+	1	NA	NA	NA	163795	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.005000	0.283582	
mm_75835.1	chr8	70527571	70527771	-	1	NA	NA	NA	-72	NM_001111066	14232	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|Fkbp38	FK506 binding protein 8	protein-coding	0.075000	0.621891	43(GTTTCTTAAAGG,-,0.00),46(TCTTAAAGGGGC,+,0.00)
mm_145170.1	chr18	46918800	46919000	+	1	NA	NA	NA	-2915	NM_001033446	381142	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	0.030000	0.462687	
mm_126960.1	chr15	92321975	92322175	+	1	NA	NA	NA	-74735	NM_001164593	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding	0.005000	0.373134	
mm_37270.1	chr4	118543938	118544138	-	1	NA	NA	NA	-312	NM_172383	230678	Mm.23639	NM_172383	ENSMUSG00000050854	Tmem125	6330530A05Rik|AV223516	transmembrane protein 125	protein-coding	0.030000	0.616915	
mm_64917.1	chr7	16240308	16240508	-	1	NA	NA	NA	1923	NM_001146005	319430	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	0.030000	0.542289	
mm_71845.1	chr8	68905002	68905202	+	1	NA	NA	NA	24547	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.358209	
mm_1113.1	chr1	59872489	59872689	+	1	NA	NA	NA	-40417	NM_001037725	72750	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0.000000	0.283582	
mm_171643.1	chr4	32046725	32046925	-	1	NA	NA	NA	82718	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.015000	0.567164	
mm_169765.1	chr15	99801401	99801601	-	1	NA	NA	NA	18648	NM_023063	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.020000	0.477612	
mm_69061.1	chr7	126897378	126897578	-	1	NA	NA	NA	800	NM_026827	68742	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0.015000	0.427861	
mm_98227.1	chr11	88067999	88068199	+	1	NA	NA	NA	-180	NM_016686	22344	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	0.150000	0.840796	
mm_81509.1	chr9	110034701	110034901	+	1	NA	NA	NA	-17220	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.005000	0.452736	
mm_53929.1	chr6	4736331	4736531	-	1	NA	NA	NA	10773	NM_001130188	20392	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	0.010000	0.348259	
mm_157721.1	chrX	70344543	70344743	-	1	NA	NA	NA	20442	NM_010498	15931	Mm.233083	NM_010498	ENSMUSG00000035847	Ids	AW214631	iduronate 2-sulfatase	protein-coding	0.000000	0.243781	
mm_94630.1	chr11	16822731	16822931	+	1	NA	NA	NA	70628	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.020000	0.398010	
mm_166400.1	chr5	135974436	135974636	-	1	NA	NA	NA	-60	NM_001160366	109267	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0.025000	0.666667	
mm_164932.1	chr18	82704961	82705161	+	1	NA	NA	NA	-12327	NM_177832	329002	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.025000	0.552239	
mm_3909.1	chr1	161896284	161896484	+	1	NA	NA	NA	-19723	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.030000	0.492537	
mm_107058.1	chr12	16653703	16653903	+	1	NA	NA	NA	333	NM_008747	18217	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT2R|NTRL	neurotensin receptor 2	protein-coding	0.080000	0.636816	
mm_167491.1	chr9	7353445	7353645	+	1	NA	NA	NA	6171	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.412935	
mm_24882.1	chr3	95996053	95996253	+	1	NA	NA	NA	-314	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.160000	0.781095	
mm_1043.1	chr1	58795562	58795762	+	1	NA	NA	NA	288	NM_009812	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.080000	0.641791	
mm_156202.1	chrX	134426924	134427124	+	1	NA	NA	NA	22244	NM_010078	13497	Mm.121662	NM_010078	ENSMUSG00000000223	Drp2	AW495265|DRP-2	dystrophin related protein 2	protein-coding	0.025000	0.601990	
mm_169860.1	chr16	3350732	3350932	+	1	NA	NA	NA	-241566	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.015000	0.457711	
mm_124885.1	chr15	10267055	10267255	+	1	NA	NA	NA	-26496	NM_001253782	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.010000	0.338308	4(GCTTCTAAAAGC,-,0.00)
mm_49424.1	chr6	29248553	29248753	+	1	NA	NA	NA	-23835	NM_001190461	69573	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.010000	0.432836	
mm_88740.1	chr10	80276633	80276833	+	1	NA	NA	NA	-1431	NR_105876	102466207		NR_105876	ENSMUSG00000098672	Mir6911	Gm27822|mmu-mir-6911	microRNA 6911	ncRNA	0.010000	0.467662	
mm_15063.1	chr2	152988531	152988731	+	1	NA	NA	NA	26146	NM_001083618	74711	Mm.44746	NM_029064	ENSMUSG00000074673	Ttll9	1700016F23Rik|4930509O20Rik|AW046572	tubulin tyrosine ligase-like family, member 9	protein-coding	0.015000	0.547264	
mm_94139.1	chr10	128720229	128720429	-	1	NA	NA	NA	14071	NM_021882	20431	Mm.16756	NM_021882	ENSMUSG00000025359	Pmel	D10H12S53E|D12S53Eh|Pmel17|Si|Silv|gp100|gp87	premelanosome protein	protein-coding	0.005000	0.497512	
mm_13743.1	chr2	118119003	118119203	+	1	NA	NA	NA	7227	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.015000	0.507463	
mm_3954.1	chr1	164063006	164063206	+	1	NA	NA	NA	1030	NM_001164059	20343	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.005000	0.398010	
mm_160824.1	chr11	33147288	33147488	-	1	NA	NA	NA	12	NM_008005	14172	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	0.165000	0.805970	
mm_130824.1	chr15	101845793	101845993	-	1	NA	NA	NA	4893	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.025000	0.517413	
mm_97645.1	chr11	79339567	79339767	+	1	NA	NA	NA	-225	NM_010897	18015	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0.075000	0.676617	
mm_3225.1	chr1	135847968	135848168	+	1	NA	NA	NA	7207	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.030000	0.562189	
mm_106897.1	chr12	8012537	8012737	+	1	NA	NA	NA	34960	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.388060	
mm_18739.1	chr2	73012670	73012870	-	1	NA	NA	NA	-32324	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.050000	0.646766	
mm_152952.1	chr19	29047812	29048012	-	1	NA	NA	NA	-10	NM_021299	56248	Mm.196067	NM_021299	ENSMUSG00000024782	Ak3	AA407498|AI506714|AK-3|Ak3l|Ak3l1|Akl3l	adenylate kinase 3	protein-coding	0.125000	0.786070	
mm_109636.1	chr12	112768555	112768755	+	1	NA	NA	NA	8000	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.010000	0.537313	
mm_42021.1	chr5	108269357	108269557	+	1	NA	NA	NA	560	NM_026106	13486	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0.015000	0.557214	
mm_137350.1	chr17	25188299	25188499	+	1	NA	NA	NA	-1	NM_001197024	74154	Mm.267353	NM_028789	ENSMUSG00000015127	Unkl	1300004G08Rik	unkempt family like zinc finger	protein-coding	0.145000	0.736318	
mm_43260.1	chr5	130242059	130242259	+	1	NA	NA	NA	13371	NM_023248	66711	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	Shwachman-Bodian-Diamond syndrome homolog (human)	protein-coding	0.010000	0.373134	
mm_77670.1	chr8	124862934	124863134	-	1	NA	NA	NA	1	NM_010322	14712	Mm.29114	NM_010322	ENSMUSG00000031985	Gnpat	AU019525|D1Ertd819e|DHAPAT	glyceronephosphate O-acyltransferase	protein-coding	0.115000	0.701493	
mm_125758.1	chr15	73836034	73836234	+	1	NA	NA	NA	3537	NM_001033365	268816	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding	0.020000	0.592040	-41(CCCTTTAAACGC,+,0.00)
mm_100952.1	chr11	6623886	6624086	-	1	NA	NA	NA	2081	NM_001130457	21379	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	0.030000	0.592040	
mm_109569.1	chr12	112106615	112106815	+	1	NA	NA	NA	32	NM_001081169	104816	Mm.77133	NM_001081169	ENSMUSG00000037686	Aspg	A530050D06Rik|AI429460|Gm690	asparaginase	protein-coding	0.015000	0.567164	-90(CCCTTTTTGAGG,-,0.00),-29(CCTTTACAAGAG,+,0.00)
mm_8674.1	chr1	156718815	156719015	-	1	NA	NA	NA	-5	NM_145413	215015	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	0.165000	0.825871	
mm_151469.1	chr19	58671611	58671811	+	1	NA	NA	NA	1346	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.025000	0.462687	
mm_32711.1	chr4	116151337	116151537	+	1	NA	NA	NA	6	NM_001290658	68273	Mm.196045	NM_026651	ENSMUSG00000028700	Pomgnt1	0610016I07Rik|4930467B06Rik	protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase	protein-coding	0.015000	0.547264	
mm_112046.1	chr12	111672198	111672398	-	1	NA	NA	NA	40	NM_021273	12709	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.085000	0.641791	-71(GGCTATAAATAG,-,0.00),-69(CTATAAATAGCC,+,0.00),-34(CCCCTTAAGAGC,-,0.00),-33(CCCTTAAGAGCT,+,0.00)
mm_76931.1	chr8	105937929	105938129	-	1	NA	NA	NA	363	NM_013640	19171	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0.040000	0.567164	
mm_164581.1	chr17	25370524	25370724	+	1	NA	NA	NA	71	NM_012034	26945	Mm.180108	NM_012034	ENSMUSG00000033200	Tpsg1	Prss31|Tmt	tryptase gamma 1	protein-coding	0.000000	0.601990	
mm_6682.1	chr1	80605727	80605927	-	1	NA	NA	NA	59525	NM_001285927	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.005000	0.393035	
mm_160936.1	chr11	94013605	94013805	+	1	NA	NA	NA	17614	NM_027569	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.010000	0.353234	
mm_3705.1	chr1	153891741	153891941	+	1	NA	NA	NA	195	NM_178244	240819	Mm.453236	NM_178244	ENSMUSG00000047053	Teddm1a	Epdd1|Teddm1|e9-1	transmembrane epididymal protein 1A	protein-coding	0.010000	0.442786	
mm_28210.1	chr3	88336412	88336612	-	1	NA	NA	NA	252	NM_178246	229512	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.095000	0.761194	
mm_165040.1	chr19	39023364	39023564	+	1	NA	NA	NA	16445	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.005000	0.462687	
mm_120353.1	chr14	63992350	63992550	+	1	NA	NA	NA	19	NM_146246	271209	Mm.300655	NM_146246	ENSMUSG00000046049	Rp1l1	BC031365|BE983540|Dcdc4|Rp1hl1	retinitis pigmentosa 1 homolog like 1	protein-coding	0.015000	0.547264	
mm_168322.1	chr11	115419818	115420018	-	1	NA	NA	NA	1	NM_027862	71679	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	0.055000	0.552239	
mm_120695.1	chr14	70890015	70890215	+	1	NA	NA	NA	8	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.045000	0.636816	
mm_150346.1	chr19	34641028	34641228	+	1	NA	NA	NA	239	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.010000	0.487562	
mm_20575.1	chr2	131086197	131086397	-	1	NA	NA	NA	468	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.000000	0.567164	
mm_19042.1	chr2	77014290	77014490	-	1	NA	NA	NA	-31843	NM_011652	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.005000	0.472637	
mm_84274.1	chr9	62796820	62797020	-	1	NA	NA	NA	14728	NM_010193	14155	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.020000	0.477612	
mm_47714.1	chr5	130000734	130000934	-	1	NA	NA	NA	1994	NM_010368	110006	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.025000	0.512438	
mm_41634.1	chr5	97091151	97091351	+	1	NA	NA	NA	20345	NM_198422	231474	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.005000	0.288557	
mm_145882.1	chr18	65478390	65478590	+	1	NA	NA	NA	47493	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.407960	1(CCTTTTCTGGCC,+,0.00)
mm_97128.1	chr11	74927595	74927795	+	1	NA	NA	NA	1823	NM_001002764	103677	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.000000	0.333333	
mm_7581.1	chr1	125396487	125396687	-	1	NA	NA	NA	39140	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.000000	0.368159	
mm_152895.1	chr19	24862127	24862327	-	1	NA	NA	NA	-385	NM_175013	226041	Mm.105222	NM_175013	ENSMUSG00000041731	Pgm5	4833423B07|9530034F03Rik|D830025G17|aciculin	phosphoglucomutase 5	protein-coding	0.005000	0.582090	
mm_84086.1	chr9	58202832	58203032	-	1	NA	NA	NA	35	NR_033522	665268	Mm.451475	NR_033522	ENSMUSG00000057818	1600029O15Rik	-	ribosomal protein L17 pseudogene	pseudo	0.025000	0.537313	
mm_44187.1	chr5	151401024	151401224	+	1	NA	NA	NA	-5380	NR_131166	100042166	Mm.443286	NR_131166	ENSMUSG00000097321	Gm3704	-	predicted gene 3704	ncRNA	0.000000	0.482587	
mm_121255.1	chr14	103057546	103057746	+	1	NA	NA	NA	10634	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.005000	0.472637	
mm_24615.1	chr3	93470583	93470783	+	1	NA	NA	NA	1929	NM_027762	71325	Mm.68064	NM_027762	ENSMUSG00000027908	Tchhl1	5430400H23Rik|AA589420|S100a17|Thhl1	trichohyalin-like 1	protein-coding	0.005000	0.422886	
mm_104105.1	chr11	86706999	86707199	-	1	NA	NA	NA	23018	NM_001098810	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.020000	0.388060	
mm_2025.1	chr1	87128593	87128793	+	1	NA	NA	NA	3685	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.010000	0.447761	
mm_60412.1	chr7	44476039	44476239	+	1	NA	NA	NA	5792	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.482587	
mm_116356.1	chr13	40725101	40725301	-	1	NA	NA	NA	-2607	NR_125899	102633805		NR_125899	ENSMUSG00000097752	Gm26688	Tfap2a-as1	predicted gene, 26688	ncRNA	0.020000	0.417910	
mm_15486.1	chr2	157562026	157562226	+	1	NA	NA	NA	2048	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.020000	0.577114	
mm_123145.1	chr14	57057597	57057797	-	1	NA	NA	NA	26	NM_001271623	14611	Mm.57207	NM_016975	ENSMUSG00000048582	Gja3	Cnx46|Cx43|Cx46|Gja-3	gap junction protein, alpha 3	protein-coding	0.125000	0.761194	
mm_57592.1	chr6	127769085	127769285	-	1	NA	NA	NA	-26	NM_201371	381813	Mm.39750	NM_201371	ENSMUSG00000030350	Prmt8	Hrmt1l3|Hrmt1l4	protein arginine N-methyltransferase 8	protein-coding	0.140000	0.771144	
mm_170109.1	chr17	39844870	39845070	+	1	NA	NA	NA	1973	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.105000	0.706468	
mm_143387.1	chr17	68004008	68004208	-	1	NA	NA	NA	0	NM_172964	268970	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0.110000	0.671642	
mm_54478.1	chr6	35086034	35086234	-	1	NA	NA	NA	47603	NM_001164412	53621	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0.000000	0.343284	
mm_90511.1	chr10	128042593	128042793	+	1	NA	NA	NA	7347	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.010000	0.522388	
mm_156248.1	chrX	136271358	136271558	+	1	NA	NA	NA	1205	NM_001110234	12070	Mm.90787	NM_009750	ENSMUSG00000046432	Bex3	AL033356|DXWsu67e|Gcap27|Nade|Ngfrap1	brain expressed X-linked 3	protein-coding	0.025000	0.542289	
mm_28792.1	chr3	95997223	95997423	-	1	NA	NA	NA	-1484	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.020000	0.517413	-39(CCCTATTTAAAC,-,0.00)
mm_17498.1	chr2	28699575	28699775	-	1	NA	NA	NA	-24	NM_027283	69987	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	0.060000	0.651741	
mm_170492.1	chr19	23056241	23056441	-	1	NA	NA	NA	-84885	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.015000	0.402985	
mm_141263.1	chr17	27623368	27623568	-	1	NA	NA	NA	-16	NM_019837	56409	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0.215000	0.781095	
mm_166508.1	chr6	6578484	6578684	-	1	NA	NA	NA	74	NM_009169	20422	Mm.2469	NM_009169	ENSMUSG00000042541	Shfm1	DSS1|Shfdg1|Shfg	split hand/foot malformation (ectrodactyly) type 1	protein-coding	0.125000	0.641791	
mm_123588.1	chr14	67072371	67072571	-	1	NA	NA	NA	0	NM_028032	71978	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0.120000	0.691542	
mm_159533.1	chr4	72852579	72852779	-	1	NA	NA	NA	-45	NM_001199270	353204	Mm.317892	NM_001199270	ENSMUSG00000059343	Aldoart1	4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2	aldolase 1 A, retrogene 1	protein-coding	0.040000	0.567164	
mm_66024.1	chr7	30612638	30612838	-	1	NA	NA	NA	-4	NM_026815	109637	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	0.000000	0.587065	-31(GCATATATAGGG,+,0.00),-31(GCATATATAGGG,-,0.00)
mm_6739.1	chr1	83038723	83038923	-	1	NA	NA	NA	-375	NM_030556	80721	Mm.261542	NM_030556	ENSMUSG00000038496	Slc19a3	A230084E24Rik|AI788884|ThTr2	solute carrier family 19, member 3	protein-coding	0.025000	0.467662	-91(CACTCTTAAAGC,-,0.00)
mm_2075.1	chr1	87641077	87641277	+	1	NA	NA	NA	20865	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.000000	0.388060	
mm_29948.1	chr3	132950125	132950325	-	1	NA	NA	NA	66	NM_001287102	114249	Mm.279310	NM_033525	ENSMUSG00000040998	Npnt	1110009H02Rik|AA682063|AI314031|Nctn|POEM	nephronectin	protein-coding	0.150000	0.835821	
mm_46844.1	chr5	113412988	113413188	-	1	NA	NA	NA	55794	NM_001012726	503692	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	0.000000	0.447761	
mm_71809.1	chr8	68880561	68880761	+	1	NA	NA	NA	106	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.060000	0.606965	-38(CCCCTTTAAAGG,-,0.00),-37(CCCTTTAAAGGT,+,0.00),-37(CCCTTTAAAGGT,-,0.00),-36(CCTTTAAAGGTT,+,0.00)
mm_161680.1	chr17	17063978	17064178	+	1	NA	NA	NA	-25	NM_001005358	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	0.020000	0.487562	
mm_126017.1	chr15	76667388	76667588	+	1	NA	NA	NA	2460	NM_007989	14106	Mm.42011	NM_007989	ENSMUSG00000033837	Foxh1	Fast1|Fast2|fast-1|fast-2	forkhead box H1	protein-coding	0.010000	0.562189	60(ACCTTTAAAAAA,-,0.00),61(CCTTTAAAAAAC,+,0.00)
mm_142089.1	chr17	35833874	35834074	-	1	NA	NA	NA	4327	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.010000	0.457711	
mm_111591.1	chr12	101975819	101976019	-	1	NA	NA	NA	-55	NM_016856	51786	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.075000	0.592040	
mm_115294.1	chr13	111980541	111980741	+	1	NA	NA	NA	112705	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.005000	0.383085	
mm_13181.1	chr2	93030295	93030495	+	1	NA	NA	NA	1047	NR_110333	433456	Mm.235231	NM_001002794	ENSMUSG00000075027	4631405J19Rik	-	RIKEN cDNA 4631405J19 gene	ncRNA	0.020000	0.592040	
mm_15865.1	chr2	164833671	164833871	+	1	NA	NA	NA	-2	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.035000	0.532338	
mm_149119.1	chr19	8984759	8984959	+	1	NA	NA	NA	-4425	NR_104460	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.020000	0.522388	
mm_50049.1	chr6	41162922	41163122	+	1	NA	NA	NA	-127513	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.452736	28(GCCTTGAAAAGA,-,0.00)
mm_32993.1	chr4	120432755	120432955	+	1	NA	NA	NA	27574	NM_013883	29871	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	0.015000	0.482587	
mm_144001.1	chr17	88065584	88065784	-	1	NA	NA	NA	-399	NM_001081034	225055	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.170000	0.805970	
mm_143816.1	chr17	83837232	83837432	-	1	NA	NA	NA	9458	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.010000	0.313433	
mm_63984.1	chr7	140049184	140049384	+	1	NA	NA	NA	-196	NM_001347609	17703	Mm.4816	NM_010836	ENSMUSG00000025469	Msx3	AI323377	msh homeobox 3	protein-coding	0.055000	0.592040	
mm_55562.1	chr6	71352737	71352937	-	1	NA	NA	NA	-20590	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.005000	0.512438	
mm_76471.1	chr8	85386228	85386428	-	1	NA	NA	NA	-5287	NM_001297612	213435	Mm.32804	NM_175441	ENSMUSG00000031698	Mylk3	D830007F02Rik|MLCK	myosin light chain kinase 3	protein-coding	0.010000	0.507463	
mm_34968.1	chr4	156008630	156008830	+	1	NA	NA	NA	-4965	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.015000	0.507463	
mm_134902.1	chr16	30185810	30186010	-	1	NA	NA	NA	81622	NM_027904	71756	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.010000	0.422886	
mm_158497.1	chrX	142369136	142369336	-	1	NA	NA	NA	21299	NM_001033600	50790	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	0.005000	0.437811	
mm_148482.1	chr19	4125949	4126149	+	1	NA	NA	NA	89	NM_025889	66990	Mm.276255	NM_025889		Tmem134	2410001H17Rik|AI463452	transmembrane protein 134	protein-coding	0.130000	0.751244	
mm_148593.1	chr19	5069645	5069845	+	1	NA	NA	NA	1667	NM_054042	70445	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.015000	0.562189	
mm_153375.1	chr19	40356605	40356805	-	1	NA	NA	NA	45605	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.015000	0.567164	
mm_45041.1	chr5	41636883	41637083	-	1	NA	NA	NA	70708	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.005000	0.303483	
mm_10163.1	chr2	4401347	4401547	+	1	NA	NA	NA	471	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.135000	0.791045	
mm_108076.1	chr12	73945674	73945874	+	1	NA	NA	NA	-18756	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.005000	0.343284	
mm_61343.1	chr7	68283704	68283904	+	1	NA	NA	NA	-7210	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.015000	0.477612	
mm_49517.1	chr6	29887820	29888020	+	1	NA	NA	NA	28324	NM_001171001	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.000000	0.328358	
mm_127162.1	chr15	98634699	98634899	+	1	NA	NA	NA	32	NM_001286226	12297	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0.140000	0.805970	
mm_117479.1	chr13	77047550	77047750	-	1	NA	NA	NA	87818	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0.020000	0.388060	33(AGCTATAAATGC,-,0.00)
mm_36414.1	chr4	78211591	78211791	-	1	NA	NA	NA	204	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.080000	0.621891	-82(CACTTTTAAAGA,-,0.00),-81(ACTTTTAAAGAA,+,0.00)
mm_139208.1	chr17	47703127	47703327	+	1	NA	NA	NA	-1231	NR_045913	100126242	Mm.392746	NR_045912	ENSMUSG00000086930	Frs3os	4930417B13Rik|Gm14873|OTTMUSG00000018358	fibroblast growth factor receptor substrate 3, opposite strand	ncRNA	0.045000	0.671642	
mm_45496.1	chr5	72165036	72165236	-	1	NA	NA	NA	3047	NM_178599	27784	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.010000	0.383085	
mm_138677.1	chr17	35916452	35916652	+	1	NA	NA	NA	-112	NM_001347380	66973	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik	mitochondrial ribosomal protein S18B	protein-coding	0.060000	0.502488	
mm_17398.1	chr2	27142443	27142643	-	1	NA	NA	NA	-66	NM_175427	109349	Mm.314080	NM_175427	ENSMUSG00000009216	Fam163b	C630035N08Rik	family with sequence similarity 163, member B	protein-coding	0.135000	0.781095	
mm_170307.1	chr18	34952311	34952511	-	1	NA	NA	NA	1940	NM_010481	15526	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.005000	0.452736	
mm_126638.1	chr15	83592912	83593112	+	1	NA	NA	NA	2145	NM_183017	223723	Mm.46778	NM_183017	ENSMUSG00000016757	Ttll12	BC055368|D430005B17	tubulin tyrosine ligase-like family, member 12	protein-coding	0.005000	0.552239	
mm_63038.1	chr7	121075750	121075950	+	1	NA	NA	NA	-1320	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.015000	0.477612	
mm_167880.1	chrX	43428828	43429028	-	1	NA	NA	NA	-154144	NM_011855	23963	Mm.327698	NM_011855	ENSMUSG00000016150	Tenm1	Odz1|Odz2|TCAP-1|Ten-m1|ten-1	teneurin transmembrane protein 1	protein-coding	0.090000	0.636816	
mm_18468.1	chr2	62411601	62411801	-	1	NA	NA	NA	530	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.055000	0.621891	
mm_16704.1	chr2	7044224	7044424	-	1	NA	NA	NA	36978	NM_001110230	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.000000	0.417910	
mm_134887.1	chr16	29441684	29441884	-	1	NA	NA	NA	-63052	NM_175650	268878	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	0.025000	0.507463	
mm_39442.1	chr5	16870159	16870359	+	1	NA	NA	NA	316358	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.010000	0.402985	
mm_85765.1	chr9	108854488	108854688	-	1	NA	NA	NA	545	NM_134420	171429	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.065000	0.666667	
mm_107495.1	chr12	38783579	38783779	+	1	NA	NA	NA	-32	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.020000	0.457711	
mm_44077.1	chr5	149016029	149016229	+	1	NA	NA	NA	9167	NR_040429	100503307	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	OTTMUSG00000021225	predicted gene 15408	ncRNA	0.015000	0.442786	
mm_3077.1	chr1	134289927	134290127	+	1	NA	NA	NA	23	NM_031189	17928	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	0.015000	0.542289	-54(GGGTTTAAATGG,-,0.00)
mm_71711.1	chr8	61936171	61936371	+	1	NA	NA	NA	8184	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.005000	0.318408	
mm_77412.1	chr8	120628474	120628674	-	1	NA	NA	NA	5808	NM_197988	68918	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0.025000	0.601990	
mm_77069.1	chr8	109991808	109992008	-	1	NA	NA	NA	1472	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.015000	0.507463	
mm_147686.1	chr18	60723625	60723825	-	1	NA	NA	NA	-10336	NM_008306	15531	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.010000	0.527363	
mm_130547.1	chr15	98953594	98953794	-	1	NA	NA	NA	-193	NM_011653	22142	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	0.030000	0.577114	
mm_142233.1	chr17	37480928	37481128	-	1	NA	NA	NA	2501	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.005000	0.268657	
mm_34127.1	chr4	139261932	139262132	+	1	NA	NA	NA	48668	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.025000	0.532338	
mm_77904.1	chr9	7348976	7349176	+	1	NA	NA	NA	1702	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.492537	
mm_37609.1	chr4	126753620	126753820	-	1	NA	NA	NA	-50	NM_133886	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.090000	0.681592	
mm_27070.1	chr3	28164646	28164846	-	1	NA	NA	NA	-98468	NM_001163007	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.005000	0.517413	-36(GCTTTAAAACCC,+,0.00)
mm_107394.1	chr12	33315302	33315502	+	1	NA	NA	NA	12887	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.035000	0.552239	
mm_75177.1	chr8	36952067	36952267	-	1	NA	NA	NA	275	NM_001194940	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.025000	0.527363	
mm_29747.1	chr3	126997866	126998066	-	1	NA	NA	NA	486	NM_178655	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.035000	0.562189	
mm_124784.1	chr15	7497397	7497597	+	1	NA	NA	NA	-99102	NM_001289498	268780	Mm.203208	NM_178748	ENSMUSG00000042961	Egflam	5930412K08|AU040377	EGF-like, fibronectin type III and laminin G domains	protein-coding	0.015000	0.393035	-21(ATGTTTATAAGG,-,0.00),-19(GTTTATAAGGTC,+,0.00)
mm_70844.1	chr8	23446610	23446810	+	1	NA	NA	NA	35208	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding	0.025000	0.522388	-7(TTTTTTAAGGGC,+,0.00)
mm_155994.1	chrX	106156697	106156897	+	1	NA	NA	NA	13522	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.010000	0.447761	
mm_154439.1	chrM	1157	1357	-	1	NA	NA	NA	NA	NA									0.020000	0.338308	
mm_163830.1	chr14	19417460	19417660	+	1	NA	NA	NA	185027	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.010000	0.348259	
mm_93340.1	chr10	99759511	99759711	-	1	NA	NA	NA	47	NM_027945	71832	Mm.483162	NM_027945	ENSMUSG00000046934	Csl	1700007H16Rik	citrate synthase like	protein-coding	0.045000	0.472637	
mm_88488.1	chr10	77711320	77711520	+	1	NA	NA	NA	-26	NM_001081452	100009614	Mm.35821	NM_001081452	ENSMUSG00000094012	Gm10024	ENSMUSG00000057573	predicted gene 10024	protein-coding	0.000000	0.557214	-33(GGGTATAAAAGC,-,0.00)
mm_42379.1	chr5	114932655	114932855	+	1	NA	NA	NA	-9447	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.030000	0.597015	
mm_12143.1	chr2	61804501	61804701	+	1	NA	NA	NA	148	NM_009322	21375	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.010000	0.437811	60(ACTTTAAAACCC,+,0.00)
mm_31675.1	chr4	62280310	62280510	+	1	NA	NA	NA	-6019	NM_025286	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.015000	0.437811	
mm_130238.1	chr15	96507098	96507298	-	1	NA	NA	NA	-46355	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.015000	0.502488	-33(GCATATAAACGG,+,0.00)
mm_66359.1	chr7	43528605	43528805	-	1	NA	NA	NA	4466	NM_001111058	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.005000	0.452736	
mm_15136.1	chr2	153966315	153966515	+	1	NA	NA	NA	-8530	NM_001080811	545477	Mm.379973	NM_001080811	ENSMUSG00000078998	Bpifa6	EG545477|Gm5840|Splunc6	BPI fold containing family A, member 6	protein-coding	0.010000	0.442786	
mm_124412.1	chr14	116947892	116948092	-	1	NA	NA	NA	22695	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.010000	0.457711	-33(GGCTATAAGAGA,-,0.00)
mm_150868.1	chr19	45047534	45047734	+	1	NA	NA	NA	58	NM_001178013	94280	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.030000	0.611940	
mm_14430.1	chr2	130563665	130563865	+	1	NA	NA	NA	8	NM_207207	99045	Mm.30057	NM_207207	ENSMUSG00000037740	Mrps26	AI648866|GI008|MRP-S13|MRP-S26|Rpms13	mitochondrial ribosomal protein S26	protein-coding	0.125000	0.736318	
mm_132438.1	chr16	35938380	35938580	+	1	NA	NA	NA	10	NM_030253	80285	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.040000	0.567164	
mm_6548.1	chr1	75133412	75133612	-	1	NA	NA	NA	378	NM_194333	22626	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.015000	0.547264	
mm_131132.1	chr16	5902494	5902694	+	1	NA	NA	NA	17801	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.005000	0.378109	
mm_28496.1	chr3	92484434	92484634	-	1	NA	NA	NA	1347	NM_009264	20753	Mm.331191	NM_009264	ENSMUSG00000050359	Sprr1a	AI528815|SPR1a|mSPRR1A	small proline-rich protein 1A	protein-coding	0.005000	0.666667	
mm_7739.1	chr1	130911346	130911546	-	1	NA	NA	NA	-150	NM_021380	58181	Mm.103794	NM_021380	ENSMUSG00000026416	Il20	Zcyto10	interleukin 20	protein-coding	0.010000	0.512438	
mm_22417.1	chr2	181498676	181498876	-	1	NA	NA	NA	1634	NM_001291204	66314	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	0.010000	0.457711	
mm_60585.1	chr7	44482632	44482832	+	1	NA	NA	NA	-1785	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.552239	38(CCCTTTCTGGGC,+,0.00)
mm_153353.1	chr19	40156751	40156951	-	1	NA	NA	NA	30435	NM_145499	226105	Mm.29119	NM_145499	ENSMUSG00000060613	Cyp2c70	-	cytochrome P450, family 2, subfamily c, polypeptide 70	protein-coding	0.000000	0.407960	-21(TCTTTTAGGGCA,+,0.00)
mm_36525.1	chr4	84675321	84675521	-	1	NA	NA	NA	-335	NM_172870	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.085000	0.636816	-17(CCCTAGAAAAGC,-,0.00)
mm_94820.1	chr11	23255953	23256153	+	1	NA	NA	NA	12	NM_134014	103573	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.065000	0.616915	
mm_173338.1	chrY	90811473	90811673	+	1	NA	NA	NA	26131	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.015000	0.492537	
mm_156007.1	chrX	106920506	106920706	+	1	NA	NA	NA	-19	NM_175271	78134	Mm.90147	NM_175271	ENSMUSG00000049929	Lpar4	5730485F04Rik|Gpr23|LPA4|p2y9	lysophosphatidic acid receptor 4	protein-coding	0.035000	0.532338	
mm_80695.1	chr9	91437752	91437952	+	1	NA	NA	NA	68880	NM_009576	22774	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.005000	0.378109	
mm_39270.1	chr5	3657096	3657296	+	1	NA	NA	NA	192	NM_029154	75010	Mm.85064	NM_029141	ENSMUSG00000014529	Tmbim7	4930403J02Rik|4930500J03Rik|4930511M11Rik|Lfg5|Lgf5|Tmbim1b	transmembrane BAX inhibitor motif containing 7	protein-coding	0.005000	0.502488	
mm_118216.1	chr13	110280563	110280763	-	1	NA	NA	NA	-457	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding	0.055000	0.477612	
mm_130747.1	chr15	101261266	101261466	-	1	NA	NA	NA	-5480	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.035000	0.577114	
mm_105126.1	chr11	101232215	101232415	-	1	NA	NA	NA	-5852	NM_007970	14055	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	0.000000	0.497512	
mm_102651.1	chr11	63313283	63313483	-	1	NA	NA	NA	72686	NR_105772	102466632		NR_105772	ENSMUSG00000098829	Mir6354	Gm27282|mmu-mir-6354	microRNA 6354	ncRNA	0.035000	0.497512	
mm_56978.1	chr6	120294828	120295028	-	1	NA	NA	NA	-369	NM_198884	330406	Mm.321840	NM_198884	ENSMUSG00000041372	B4galnt3	AB114826|B4GalNAcT3|C330047A21	beta-1,4-N-acetyl-galactosaminyl transferase 3	protein-coding	0.050000	0.671642	
mm_34316.1	chr4	141818994	141819194	+	1	NA	NA	NA	6911	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.035000	0.606965	
mm_132580.1	chr16	38346979	38347179	+	1	NA	NA	NA	80	NM_001017429	12856	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	0.075000	0.641791	
mm_165742.1	chr3	107218061	107218261	-	1	NA	NA	NA	3571	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.527363	
mm_85632.1	chr9	107635242	107635442	-	1	NA	NA	NA	0	NM_008138	14678	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	0.145000	0.810945	
mm_41203.1	chr5	88455891	88456091	+	1	NA	NA	NA	0	NM_001303431	11698	Mm.8437	NM_009664	ENSMUSG00000029288	Ambn	-	ameloblastin	protein-coding	0.005000	0.412935	
mm_28412.1	chr3	90389200	90389400	-	1	NA	NA	NA	638	NM_001316688	26568	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	0.095000	0.701493	
mm_105864.1	chr11	114066925	114067125	-	1	NA	NA	NA	-1074	NM_172800	237979	Mm.130504	NM_172800	ENSMUSG00000041592	Sdk2	4632412F08Rik|5330435L01Rik|Sdk-2|mKIAA1514	sidekick cell adhesion molecule 2	protein-coding	0.115000	0.751244	
mm_80823.1	chr9	96766724	96766924	+	1	NA	NA	NA	1262	NR_102296	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	0.000000	0.333333	
mm_127576.1	chr15	102296193	102296393	+	1	NA	NA	NA	0	NM_001014976	105988	Mm.288324	NM_001014976	ENSMUSG00000058290	Espl1	AL024103|AU045071|Cerp|ESP1|PRCE|SSE	extra spindle pole bodies 1, separase	protein-coding	0.090000	0.606965	
mm_29384.1	chr3	108855882	108856082	-	1	NA	NA	NA	-15480	NM_011504	20912	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.015000	0.542289	-35(ATGCATAAAAGC,-,0.00)
mm_154038.1	chr19	53573225	53573425	-	1	NA	NA	NA	-27071	NM_007790	13006	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.000000	0.542289	
mm_121552.1	chr14	122475869	122476069	+	1	NA	NA	NA	585	NM_009574	22772	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0.115000	0.686567	
mm_71161.1	chr8	40511330	40511530	+	1	NA	NA	NA	324	NM_001271543	18983	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0.130000	0.776119	
mm_170926.1	chr2	3958160	3958360	+	1	NA	NA	NA	-59423	NM_001347086	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.035000	0.567164	
mm_109708.1	chr12	113421992	113422192	+	1	NA	NA	NA	-67473	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.030000	0.497512	
mm_159460.1	chr3	156561789	156561989	+	1	NA	NA	NA	95	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.130000	0.776119	
mm_28507.1	chr3	92573634	92573834	-	1	NA	NA	NA	1	NM_008412	16447	Mm.207365	NM_008412	ENSMUSG00000049128	Ivl	1110019C06Rik	involucrin	protein-coding	0.005000	0.527363	-33(CAATATAAAGGG,-,0.00)
mm_71109.1	chr8	35620696	35620896	+	1	NA	NA	NA	-31776	NR_040376	100504714	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0.000000	0.402985	-85(CTCTTTAAGAGG,-,0.00),-84(TCTTTAAGAGGA,+,0.00)
mm_44534.1	chr5	24475504	24475704	-	1	NA	NA	NA	23427	NM_139153	213990	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.005000	0.542289	
mm_171740.1	chr4	96184824	96185024	+	1	NA	NA	NA	-43772	NM_001100182	242546	Mm.302562	NM_001100182	ENSMUSG00000081225	Cyp2j12	BB197342|Cyp2j12-ps|OTTMUSG00000007939	cytochrome P450, family 2, subfamily j, polypeptide 12	protein-coding	0.000000	0.502488	62(CCTTTTATAAGC,+,0.00),62(CCTTTTATAAGC,-,0.00)
mm_124491.1	chr14	121738962	121739162	-	1	NA	NA	NA	-133	NM_001128307	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.025000	0.422886	
mm_81817.1	chr9	118040527	118040727	+	1	NA	NA	NA	105	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.145000	0.746269	
mm_161246.1	chr13	100316500	100316700	-	1	NA	NA	NA	16	NM_010871	17952	Mm.218759	NM_010871	ENSMUSG00000078942	Naip6	Birc1f|Naip-rs4|Naip-rs4A	NLR family, apoptosis inhibitory protein 6	protein-coding	0.015000	0.492537	
mm_53170.1	chr6	125342668	125342868	+	1	NA	NA	NA	-6955	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.025000	0.577114	
mm_89679.1	chr10	97517488	97517688	+	1	NA	NA	NA	35257	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.040000	0.482587	
mm_81524.1	chr9	110062476	110062676	+	1	NA	NA	NA	10555	NM_001311164	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.020000	0.497512	
mm_139859.1	chr17	69969270	69969470	+	1	NA	NA	NA	297	NM_001347411	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.155000	0.781095	
mm_100679.1	chr11	3452793	3452993	-	1	NA	NA	NA	63	NM_001290472	193670	Mm.136973	NM_145355	ENSMUSG00000020448	Rnf185	-	ring finger protein 185	protein-coding	0.040000	0.582090	-35(TACTATAAAAGG,-,0.00)
mm_30425.1	chr3	152845715	152845915	-	1	NA	NA	NA	131715	NM_025662	329777	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0.000000	0.502488	
mm_19588.1	chr2	101950508	101950708	-	1	NA	NA	NA	64346	NM_029635	76501	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0.010000	0.288557	
mm_142390.1	chr17	44880731	44880931	-	1	NA	NA	NA	54	NM_029257	75341	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0.010000	0.437811	
mm_158385.1	chrX	136085128	136085328	-	1	NA	NA	NA	27	NM_001024141	245610	Mm.336244	NM_001024141	ENSMUSG00000057000	Nxf3	Gm384	nuclear RNA export factor 3	protein-coding	0.015000	0.482587	
mm_100062.1	chr11	115323459	115323659	+	1	NA	NA	NA	-1641	NM_176847	16470	Mm.451539	NM_176847	ENSMUSG00000045288	Ush1g	Sans|js	Usher syndrome 1G	protein-coding	0.085000	0.641791	
mm_74202.1	chr8	123892244	123892444	+	1	NA	NA	NA	2431	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.040000	0.577114	
mm_125315.1	chr15	38219198	38219398	+	1	NA	NA	NA	95	NM_008757	18285	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0.000000	0.427861	
mm_93708.1	chr10	118715670	118715870	-	1	NA	NA	NA	153133	NM_001014390	69181	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.015000	0.447761	
mm_34650.1	chr4	150853679	150853879	+	1	NA	NA	NA	1170	NR_040649	73348	Mm.396218	NR_040649	ENSMUSG00000078492	1700045H11Rik	-	RIKEN cDNA 1700045H11 gene	ncRNA	0.015000	0.492537	
mm_119658.1	chr14	52136433	52136633	+	1	NA	NA	NA	25630	NM_023879	77945	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	0.015000	0.422886	
mm_45206.1	chr5	52712701	52712901	-	1	NA	NA	NA	-28773	NM_028744	67073	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	0.000000	0.472637	
mm_156514.1	chrX	150553912	150554112	+	1	NA	NA	NA	-6567	NR_106147	102465782		NR_106147	ENSMUSG00000099172	Mir3620	Gm27984|mmu-mir-3620	microRNA 3620	ncRNA	0.005000	0.507463	
mm_74845.1	chr8	24576180	24576380	-	1	NA	NA	NA	53	NM_145949	209176	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0.030000	0.562189	
mm_19931.1	chr2	116065128	116065328	-	1	NA	NA	NA	-170	NM_010825	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.030000	0.422886	
mm_148294.1	chr18	82585230	82585430	-	1	NA	NA	NA	30822	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.025000	0.457711	
mm_89807.1	chr10	103029071	103029271	+	1	NA	NA	NA	-394	NM_172553	216285	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding	0.040000	0.562189	59(TGCTCTAAAGAG,-,0.00)
mm_99963.1	chr11	113684353	113684553	+	1	NA	NA	NA	41	NM_177777	276852	Mm.239566	NM_177777	ENSMUSG00000041623	D11Wsu47e	-	DNA segment, Chr 11, Wayne State University 47, expressed	protein-coding	0.075000	0.582090	
mm_170121.1	chr17	39846725	39846925	+	1	NA	NA	NA	3828	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.070000	0.552239	
mm_31094.1	chr4	41755420	41755620	+	1	NA	NA	NA	292	NM_016658	14430	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	0.075000	0.651741	
mm_36025.1	chr4	57073252	57073452	-	1	NA	NA	NA	69804	NM_019427	54357	Mm.28217	NM_019427	ENSMUSG00000028434	Epb41l4b	6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2	erythrocyte membrane protein band 4.1 like 4b	protein-coding	0.055000	0.492537	
mm_87616.1	chr10	57794428	57794628	+	1	NA	NA	NA	-16	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.025000	0.477612	
mm_96106.1	chr11	60538010	60538210	+	1	NA	NA	NA	427	NM_172943	268420	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.130000	0.701493	-31(GCTTTAAAGTGC,+,0.00)
mm_78015.1	chr9	13625583	13625783	+	1	NA	NA	NA	5694	NM_001013813	270118	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like 2 (Drosophila)	protein-coding	0.000000	0.303483	-42(CTTTTTTAAAGG,-,0.00),-41(TTTTTTAAAGGA,+,0.00)
mm_156660.1	chrX	157711437	157711637	+	1	NA	NA	NA	12564	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.010000	0.313433	
mm_56443.1	chr6	97459266	97459466	-	1	NA	NA	NA	-80	NM_001346639	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.025000	0.482587	
mm_99328.1	chr11	101459947	101460147	+	1	NA	NA	NA	6152	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.020000	0.606965	
mm_11144.1	chr2	28512991	28513191	+	1	NA	NA	NA	-76	NM_009058	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.150000	0.741294	
mm_149437.1	chr19	11477829	11478029	+	1	NA	NA	NA	8561	NM_028595	73656	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.005000	0.373134	
mm_34563.1	chr4	149854447	149854647	+	1	NA	NA	NA	-80280	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.040000	0.497512	
mm_36995.1	chr4	110286770	110286970	-	1	NA	NA	NA	-36	NM_001163399	15572	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein-coding	0.010000	0.487562	
mm_102197.1	chr11	54522554	54522754	-	1	NA	NA	NA	-191	NM_001252494	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.095000	0.552239	64(GCTCTTATGGCC,+,0.00)
mm_7296.1	chr1	97910633	97910833	-	1	NA	NA	NA	137060	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA	0.020000	0.417910	
mm_78252.1	chr9	21735571	21735771	+	1	NA	NA	NA	12095	NM_010700	16835	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.005000	0.348259	
mm_63190.1	chr7	125603329	125603529	+	1	NA	NA	NA	0	NM_021887	60504	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.025000	0.592040	
mm_114647.1	chr13	76935003	76935203	+	1	NA	NA	NA	200365	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0.010000	0.457711	
mm_156784.1	chrX	161777850	161778050	+	1	NA	NA	NA	60397	NM_198409	24004	Mm.328503	NM_198409	ENSMUSG00000043518	Rai2	3f8	retinoic acid induced 2	protein-coding	0.030000	0.587065	
mm_55664.1	chr6	72439457	72439657	-	1	NA	NA	NA	1	NM_145569	232087	Mm.29815	NM_145569	ENSMUSG00000053907	Mat2a	D630045P18Rik	methionine adenosyltransferase II, alpha	protein-coding	0.150000	0.721393	-34(CTCTATAAATAC,-,0.00)
mm_27515.1	chr3	56183587	56183787	-	1	NA	NA	NA	14	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.140000	0.776119	
mm_112079.1	chr12	112668017	112668217	-	1	NA	NA	NA	6159	NM_001165894	11651	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.035000	0.592040	-29(TCCCTTAAAAAC,-,0.00),-27(CCTTAAAAACAA,+,0.00)
mm_91558.1	chr10	39986502	39986702	-	1	NA	NA	NA	44	NM_001113385	215928	Mm.31744	NM_001001489	ENSMUSG00000038528	Mfsd4b5	Naglt1c	major facilitator superfamily domain containing 4B5	protein-coding	0.025000	0.582090	
mm_52220.1	chr6	103510838	103511038	+	1	NA	NA	NA	62	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.060000	0.616915	
mm_83263.1	chr9	42461300	42461500	-	1	NA	NA	NA	10826	NM_173038	272589	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0.015000	0.472637	41(GGCTTTAAAACG,-,0.00),42(GCTTTAAAACGA,+,0.00)
mm_124983.1	chr15	21034945	21035145	+	1	NA	NA	NA	-76407	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.005000	0.333333	
mm_163643.1	chr13	62812895	62813095	+	1	NA	NA	NA	-27187	NM_001256065	380850	Mm.439823	NM_001256065	ENSMUSG00000091183	Gm5141	-	predicted gene 5141	protein-coding	0.145000	0.805970	
mm_87067.1	chr10	29143627	29143827	+	1	NA	NA	NA	-269	NM_026138	67412	Mm.390264	NM_026138	ENSMUSG00000038916	Soga3	6330407J23Rik	SOGA family member 3	protein-coding	0.045000	0.522388	-35(GCCTCTAAGAGC,-,0.00)
mm_18830.1	chr2	74714180	74714380	-	1	NA	NA	NA	1850	NR_027899	73429	Mm.443313	NR_027899		Hoxd3os1	1700064D17Rik|1700109F18Rik	homeobox D3, opposite strand 1	ncRNA	0.020000	0.422886	-48(GTCTATAAATAG,-,0.00)
mm_79879.1	chr9	65214582	65214782	+	1	NA	NA	NA	-8	NM_177460	214424	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.025000	0.492537	
mm_44174.1	chr5	150953239	150953439	+	1	NA	NA	NA	732	NM_013823	16591	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.070000	0.631841	
mm_152699.1	chr19	17278359	17278559	-	1	NA	NA	NA	61046	NM_001136484	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.010000	0.412935	
mm_2565.1	chr1	118321791	118321991	+	1	NA	NA	NA	48	NM_026472	67949	Mm.280311	NM_026472	ENSMUSG00000026377	Nifk	AI852665|C130020J04Rik|Mki67ip	nucleolar protein interacting with the FHA domain of MKI67	protein-coding	0.090000	0.587065	
mm_26953.1	chr3	20367077	20367277	-	1	NA	NA	NA	0	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0.035000	0.577114	
mm_166185.1	chr5	32458863	32459063	+	1	NA	NA	NA	-7	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.130000	0.736318	
mm_32085.1	chr4	98436712	98436912	+	1	NA	NA	NA	40986	NM_172696	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.020000	0.437811	
mm_29869.1	chr3	130730184	130730384	-	1	NA	NA	NA	45	NM_001199350	619547	Mm.391636	NM_001199350		Rpl34-ps1	EG619547|ENSMUSG00000068396|Gm10239	ribosomal protein L34, pseudogene 1	protein-coding	0.085000	0.626866	
mm_135192.1	chr16	36367530	36367730	-	1	NA	NA	NA	-60	NM_001082546	100034684	Mm.383561	NM_001082546	ENSMUSG00000071561	BC100530	-	cDNA sequence BC100530	protein-coding	0.015000	0.477612	49(CCTTTAAAACCC,+,0.00)
mm_56063.1	chr6	86780850	86781050	-	1	NA	NA	NA	-5836	NM_001331120	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.000000	0.432836	
mm_162467.1	chr1	132007307	132007507	+	1	NA	NA	NA	-198	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.080000	0.631841	
mm_128205.1	chr15	36010736	36010936	-	1	NA	NA	NA	-72590	NM_053071	12864	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0.005000	0.288557	
mm_62814.1	chr7	113239567	113239767	+	1	NA	NA	NA	32202	NM_007489	11865	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0.005000	0.462687	
mm_136985.1	chr17	17232044	17232244	+	1	NA	NA	NA	-62299	NM_001324550	100862203	Mm.484235	NM_001324550		Gm6712	EG626854	predicted gene 6712	protein-coding	0.025000	0.472637	-30(CTTTAAATACCC,+,0.00)
mm_160397.1	chr8	69902583	69902783	-	1	NA	NA	NA	-125	NM_023312	67184	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.140000	0.671642	
mm_40508.1	chr5	57731630	57731830	+	1	NA	NA	NA	13649	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.005000	0.432836	
mm_52290.1	chr6	108664930	108665130	+	1	NA	NA	NA	-4096	NR_104577	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.025000	0.552239	
mm_19550.1	chr2	98666184	98666384	-	1	NA	NA	NA	1198627	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.010000	0.348259	
mm_109811.1	chr12	3426547	3426747	-	1	NA	NA	NA	100	NR_030694	100043040	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0.085000	0.592040	
mm_556.1	chr1	38021577	38021777	+	1	NA	NA	NA	23667	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.010000	0.373134	
mm_164512.1	chr16	95464503	95464703	-	1	NA	NA	NA	-5255	NM_001302153	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	0.010000	0.393035	
mm_170493.1	chr19	23075817	23076017	-	1	NA	NA	NA	-65309	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.015000	0.507463	
mm_147168.1	chr18	36726479	36726679	-	1	NA	NA	NA	236	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.025000	0.492537	
mm_15549.1	chr2	158409828	158410028	+	1	NA	NA	NA	75	NM_001291138	228850	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0.110000	0.706468	
mm_20421.1	chr2	129302884	129303084	-	1	NA	NA	NA	5614	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.030000	0.402985	
mm_11845.1	chr2	45197639	45197839	+	1	NA	NA	NA	-84460	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.025000	0.388060	
mm_56159.1	chr6	87851447	87851647	-	1	NA	NA	NA	-441	NM_001347325	12785	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	0.035000	0.482587	
mm_168853.1	chr12	24252357	24252557	-	1	NA	NA	NA	-155188	NM_001256489	66808	Mm.379124	NM_001256489	ENSMUSG00000073158	9030624G23Rik	-	RIKEN cDNA 9030624G23 gene	protein-coding	0.115000	0.771144	
mm_140787.1	chr17	18958999	18959199	-	1	NA	NA	NA	44777	NM_001104549	627367	Mm.384131	NM_001104549	ENSMUSG00000091491	Vmn2r97	EG627367|Vn2r97	vomeronasal 2, receptor 97	protein-coding	0.010000	0.363184	-61(ACCTCTTTAAGG,-,0.00),-59(CTCTTTAAGGTC,+,0.00)
mm_79491.1	chr9	57073765	57073965	+	1	NA	NA	NA	1825	NM_001110351	20466	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	0.060000	0.597015	
mm_2629.1	chr1	121087304	121087504	+	1	NA	NA	NA	-1	NR_038008	98452	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0.005000	0.527363	
mm_37950.1	chr4	133241316	133241516	-	1	NA	NA	NA	598	NM_016693	53608	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	0.105000	0.706468	
mm_123486.1	chr14	66009120	66009320	-	1	NA	NA	NA	-10	NM_178747	268756	Mm.26207	NM_178747	ENSMUSG00000034450	Gulo	5730581M22|AU018375|BC028822|GLO|LGO|sfx|unh|unhip	gulonolactone (L-) oxidase	protein-coding	0.030000	0.601990	
mm_50382.1	chr6	48686498	48686698	+	1	NA	NA	NA	2020	NM_174990	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.010000	0.492537	
mm_8963.1	chr1	165160678	165160878	-	1	NA	NA	NA	-5	NM_032005	83993	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	0.010000	0.522388	
mm_119342.1	chr14	41072840	41073040	+	1	NA	NA	NA	29	NM_027094	69496	Mm.55734	NM_027094	ENSMUSG00000021790	Dydc1	1700029M23Rik	DPY30 domain containing 1	protein-coding	0.075000	0.592040	
mm_39686.1	chr5	26817319	26817519	+	1	NA	NA	NA	62	NM_010075	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.040000	0.587065	
mm_88289.1	chr10	75212073	75212273	+	1	NA	NA	NA	100	NM_153406	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.140000	0.756219	
mm_9165.1	chr1	170971860	170972060	-	1	NA	NA	NA	4111	NM_001077189	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.010000	0.417910	
mm_80704.1	chr9	92249930	92250130	+	1	NA	NA	NA	-164	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.020000	0.467662	
mm_40637.1	chr5	64906196	64906396	+	1	NA	NA	NA	26403	NM_030682	21897	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.045000	0.547264	
mm_63273.1	chr7	126762776	126762976	+	1	NA	NA	NA	3250	NM_011952	26417	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.035000	0.567164	
mm_104409.1	chr11	94601738	94601938	-	1	NA	NA	NA	-52	NM_153807	264895	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0.110000	0.686567	
mm_18337.1	chr2	58052751	58052951	-	1	NA	NA	NA	-99	NM_029972	77767	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	0.030000	0.487562	
mm_104043.1	chr11	86348948	86349148	-	1	NA	NA	NA	8477	NM_001080931	327987	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0.000000	0.298507	
mm_140722.1	chr17	15433233	15433433	-	1	NA	NA	NA	37087	NM_024203	67544	Mm.35039	NM_024203	ENSMUSG00000014763	Fam120b	4932442K08Rik|AW049283|AW413338|CCPG|Pgcc1|mKIAA1838	family with sequence similarity 120, member B	protein-coding	0.025000	0.402985	
mm_157413.1	chrX	38441996	38442196	-	1	NA	NA	NA	14364	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.005000	0.323383	10(GCCTTTATGCAG,+,0.00)
mm_119737.1	chr14	54121815	54122015	+	1	NA	NA	NA	132014	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.472637	
mm_31180.1	chr4	43506991	43507191	+	1	NA	NA	NA	65	NM_139305	230099	Mm.283682	NM_139305	ENSMUSG00000028463	Car9	CAIX|Ca9|MN/CA9	carbonic anhydrase 9	protein-coding	0.025000	0.661692	
mm_13678.1	chr2	116878621	116878821	+	1	NA	NA	NA	30	NM_026104	67356	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	0.010000	0.487562	
mm_167073.1	chr7	99879639	99879839	-	1	NA	NA	NA	20521	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.005000	0.422886	
mm_20215.1	chr2	125723574	125723774	-	1	NA	NA	NA	474	NM_199022	271849	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding	0.055000	0.646766	
mm_330.1	chr1	26156170	26156370	+	1	NA	NA	NA	-326563	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.000000	0.218905	
mm_85285.1	chr9	99709914	99710114	-	1	NA	NA	NA	49	NM_019815	56492	Mm.386784	NM_019815	ENSMUSG00000032473	Cldn18	-	claudin 18	protein-coding	0.035000	0.582090	
mm_172954.1	chr9	87952291	87952491	-	1	NA	NA	NA	-221131	NM_023814	76365	Mm.158789	NM_023814	ENSMUSG00000032419	Tbx18	2810012F10Rik|2810404D13Rik	T-box18	protein-coding	0.025000	0.492537	
mm_125460.1	chr15	52295548	52295748	+	1	NA	NA	NA	95	NM_172816	239436	Mm.208831	NM_172816	ENSMUSG00000022315	Slc30a8	C820002P14Rik|ZnT-8|ZnT8	solute carrier family 30 (zinc transporter), member 8	protein-coding	0.035000	0.457711	
mm_143699.1	chr17	80480383	80480583	-	1	NA	NA	NA	-30	NM_009231	20662	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	son of sevenless homolog 1 (Drosophila)	protein-coding	0.120000	0.716418	
mm_157951.1	chrX	87238027	87238227	-	1	NA	NA	NA	877496	NM_001160403	331461	Mm.121680	NM_001160403	ENSMUSG00000052372	Il1rapl1	6330532G10Rik|C030039N24|IL1R8|IL1RAPL|MRX34|OPHN4|TIGIRR-2	interleukin 1 receptor accessory protein-like 1	protein-coding	0.000000	0.283582	
mm_39363.1	chr5	9118623	9118823	+	1	NA	NA	NA	17986	NM_001081029	652925	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.020000	0.407960	22(CTCCTTTAAAAC,-,0.00),24(CCTTTAAAACGC,+,0.00)
mm_30356.1	chr3	151764072	151764272	-	1	NA	NA	NA	-1281	NM_031367	15061	Mm.219544	NM_031367	ENSMUSG00000039146	Ifi44l	H-28|H28|H28-1|NS1178	interferon-induced protein 44 like	protein-coding	0.000000	0.393035	
mm_131103.1	chr16	5007270	5007470	+	1	NA	NA	NA	54	NR_045596	432995	Mm.271618	NM_001253796	ENSMUSG00000096215	Smim22	EG432995|Gm5480	small integral membrane protein 22	protein-coding	0.015000	0.626866	
mm_131156.1	chr16	6889476	6889676	+	1	NA	NA	NA	-180259	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.005000	0.442786	-32(TCTTAAATACCC,+,0.00)
mm_42375.1	chr5	114929008	114929208	+	1	NA	NA	NA	5868	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.005000	0.467662	-18(AGCTTTTAAAGA,-,0.00),-17(GCTTTTAAAGAA,+,0.00)
mm_73444.1	chr8	106210902	106211102	+	1	NA	NA	NA	-52	NM_145404	214572	Mm.251804	NM_145404	ENSMUSG00000060098	Prmt7	4933402B05Rik|BC006705	protein arginine N-methyltransferase 7	protein-coding	0.120000	0.691542	
mm_48365.1	chr5	139460425	139460625	-	1	NA	NA	NA	9	NM_028469	73212	Mm.84294	NM_028469	ENSMUSG00000053553	3110082I17Rik	AW411904	RIKEN cDNA 3110082I17 gene	protein-coding	0.085000	0.676617	
mm_153179.1	chr19	34494021	34494221	-	1	NA	NA	NA	-18986	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.020000	0.487562	
mm_127304.1	chr15	100227764	100227964	+	1	NA	NA	NA	5	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.155000	0.796020	
mm_61277.1	chr7	66743561	66743761	+	1	NA	NA	NA	157	NM_001164201	545975	Mm.380104	NM_001164201	ENSMUSG00000030510	Cers3	4930550L11Rik|Gm488|Lass3|T3L	ceramide synthase 3	protein-coding	0.030000	0.522388	
mm_37992.1	chr4	133633525	133633725	-	1	NA	NA	NA	-196	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.050000	0.661692	-99(CCCTTTAGACAC,+,0.00)
mm_83475.1	chr9	45828497	45828697	-	1	NA	NA	NA	41	NM_001081373	214552	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	0.070000	0.696517	
mm_111107.1	chr12	80957956	80958156	-	1	NA	NA	NA	10023	NM_011387	20493	Mm.486361	NM_011387	ENSMUSG00000021135	Slc10a1	Ntcp	solute carrier family 10 (sodium/bile acid cotransporter family), member 1	protein-coding	0.010000	0.472637	
mm_107595.1	chr12	49381885	49382085	+	1	NA	NA	NA	-898	NM_001160112	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.005000	0.557214	
mm_62340.1	chr7	100497013	100497213	+	1	NA	NA	NA	3755	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.040000	0.611940	
mm_45734.1	chr5	86373344	86373544	-	1	NA	NA	NA	-57	NM_145561	231382	Mm.240139	NM_145561	ENSMUSG00000061259	Tmprss11d	AST|AsP|BC020151	transmembrane protease, serine 11d	protein-coding	0.005000	0.412935	
mm_38547.1	chr4	141601538	141601738	-	1	NA	NA	NA	-1714	NM_001163256	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.010000	0.587065	
mm_135307.1	chr16	38712783	38712983	-	1	NA	NA	NA	152	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.135000	0.761194	
mm_78678.1	chr9	40784740	40784940	+	1	NA	NA	NA	-16433	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.015000	0.432836	
mm_51880.1	chr6	90571652	90571852	+	1	NA	NA	NA	20904	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.015000	0.626866	
mm_94058.1	chr10	128303080	128303280	-	1	NA	NA	NA	-155	NM_133992	103135	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	0.045000	0.477612	
mm_10319.1	chr2	11218356	11218556	+	1	NA	NA	NA	46074	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.010000	0.497512	
mm_150506.1	chr19	39023456	39023656	+	1	NA	NA	NA	16537	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.000000	0.457711	
mm_153210.1	chr19	34716819	34717019	-	1	NA	NA	NA	30192	NM_172838	240638	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0.020000	0.502488	32(CTTTTTAAAAAC,+,0.00)
mm_142230.1	chr17	37480759	37480959	-	1	NA	NA	NA	2670	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.010000	0.398010	
mm_76965.1	chr8	106137282	106137482	-	1	NA	NA	NA	-408	NM_176838	77411	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	0.060000	0.547264	
mm_115417.1	chr13	116309732	116309932	+	1	NA	NA	NA	-144	NM_021459	16392	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0.155000	0.746269	
mm_75069.1	chr8	33832253	33832453	-	1	NA	NA	NA	-84583	NM_001206849	72632	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	0.005000	0.388060	51(CCCTTTATATAG,+,0.00),51(CCCTTTATATAG,-,0.00),53(CTTTATATAGCT,+,0.00)
mm_90275.1	chr10	122795066	122795266	+	1	NA	NA	NA	115851	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.005000	0.333333	
mm_81805.1	chr9	116314332	116314532	+	1	NA	NA	NA	-139069	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.025000	0.497512	
mm_118259.1	chr13	112447174	112447374	-	1	NA	NA	NA	-16796	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.015000	0.447761	
mm_85074.1	chr9	91361526	91361726	-	1	NA	NA	NA	4173	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.075000	0.557214	82(CCCTATTTAAGA,-,0.00)
mm_27955.1	chr3	79842795	79842995	-	1	NA	NA	NA	-233	NM_027495	70652	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.045000	0.646766	
mm_1879.1	chr1	85649914	85650114	+	1	NA	NA	NA	26	NM_001313714	20684	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.015000	0.542289	
mm_59752.1	chr7	28821952	28822152	+	1	NA	NA	NA	-3286	NM_016772	51798	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.000000	0.338308	-4(CCTTTTAAATGC,+,0.00)
mm_131516.1	chr16	17510975	17511175	+	1	NA	NA	NA	1863	NM_001331226	66863	Mm.161726	NM_025808	ENSMUSG00000022761	Lztr1	1200003E21Rik|AI591627|AW550890	leucine-zipper-like transcriptional regulator, 1	protein-coding	0.000000	0.472637	
mm_45253.1	chr5	62765525	62765725	-	1	NA	NA	NA	552	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.010000	0.507463	
mm_44651.1	chr5	28209975	28210175	-	1	NA	NA	NA	93	NM_001310511	269637	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.060000	0.547264	
mm_170343.1	chr18	48047811	48048011	+	1	NA	NA	NA	2576	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.035000	0.592040	
mm_76677.1	chr8	93813483	93813683	-	1	NA	NA	NA	-28	NR_026888	75809	Mm.443272	NM_029449		4930488L21Rik	4930452J22Rik	RIKEN cDNA 4930488L21 gene	ncRNA	0.110000	0.681592	
mm_43380.1	chr5	135697153	135697353	+	1	NA	NA	NA	8108	NM_008898	18984	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.010000	0.487562	
mm_49980.1	chr6	40891584	40891784	+	1	NA	NA	NA	-4190	NM_139296	194357	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0.020000	0.522388	
mm_82762.1	chr9	26896896	26897096	-	1	NA	NA	NA	26085	NM_001281475	382064	Mm.335028	NM_001177509	ENSMUSG00000079644	Gm1110	-	predicted gene 1110	protein-coding	0.000000	0.313433	
mm_152090.1	chr19	6907922	6908122	-	1	NA	NA	NA	1623	NM_012021	54683	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.010000	0.512438	
mm_155095.1	chrX	48256805	48257005	+	1	NA	NA	NA	-29	NM_028276	72554	Mm.336045	NM_028276	ENSMUSG00000063785	Utp14a	2700066J21Rik|JsdX|NY-CO-16|SDCCAG16|T25628|mKIAA0266	UTP14A small subunit processome component	protein-coding	0.080000	0.532338	
mm_7701.1	chr1	130422681	130422881	-	1	NA	NA	NA	262	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	0.025000	0.592040	
mm_8103.1	chr1	135849351	135849551	-	1	NA	NA	NA	8590	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.025000	0.562189	
mm_37856.1	chr4	132261449	132261649	-	1	NA	NA	NA	0	NM_020273	56809	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	0.185000	0.825871	-100(CCCCTTTAAGGC,-,0.00),-99(CCCTTTAAGGCG,+,0.00),-98(CCTTTAAGGCGC,+,0.00)
mm_9805.1	chr1	181918394	181918594	-	1	NA	NA	NA	-76093	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.010000	0.522388	
mm_168906.1	chr12	55155275	55155475	+	1	NA	NA	NA	271	NM_001100109	665155	Mm.12848	NM_001100109	ENSMUSG00000079108	Srp54b	-	signal recognition particle 54B	protein-coding	0.075000	0.611940	
mm_164124.1	chr15	38570671	38570871	-	1	NA	NA	NA	24163	NR_045757	69679	Mm.416890	NR_045757	ENSMUSG00000102106	2310043O21Rik	-	RIKEN cDNA 2310043O21 gene	ncRNA	0.010000	0.492537	
mm_130918.1	chr15	102670960	102671160	-	1	NA	NA	NA	-13	NM_026468	67942	Mm.10314	NM_026468	ENSMUSG00000062683	Atp5g2	1810041M08Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	protein-coding	0.110000	0.676617	
mm_65331.1	chr7	24978256	24978456	-	1	NA	NA	NA	-5628	NM_010261	14470	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.010000	0.611940	
mm_59396.1	chr7	26764468	26764668	+	1	NA	NA	NA	7426	NM_007814	13090	Mm.14098	NM_007814	ENSMUSG00000066704	Cyp2b19	CYPIIB19	cytochrome P450, family 2, subfamily b, polypeptide 19	protein-coding	0.005000	0.427861	
mm_75992.1	chr8	72393372	72393572	-	1	NA	NA	NA	28002	NM_001122832	13859	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	0.005000	0.363184	
mm_84359.1	chr9	64726485	64726685	-	1	NA	NA	NA	11171	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.010000	0.398010	
mm_41719.1	chr5	102175228	102175428	+	1	NA	NA	NA	-105407	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.005000	0.522388	
mm_79323.1	chr9	52682981	52683181	+	1	NA	NA	NA	3218	NR_045333	382139	Mm.335162	NR_045333	ENSMUSG00000111020	Gm1715	-	predicted gene 1715	ncRNA	0.005000	0.457711	
mm_132081.1	chr16	30196022	30196222	+	1	NA	NA	NA	71410	NM_027904	71756	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.010000	0.537313	
mm_28096.1	chr3	86002401	86002601	-	1	NA	NA	NA	-10	NM_001001650	368202	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding	0.035000	0.611940	
mm_161641.1	chr16	94611345	94611545	+	1	NA	NA	NA	26	NM_001347731	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.015000	0.412935	
mm_82771.1	chr9	26924091	26924291	-	1	NA	NA	NA	-1110	NM_001281475	382064	Mm.335028	NM_001177509	ENSMUSG00000079644	Gm1110	-	predicted gene 1110	protein-coding	0.005000	0.388060	
mm_20094.1	chr2	120970517	120970717	-	1	NA	NA	NA	98	NM_009461	22222	Mm.389330	NM_009461	ENSMUSG00000027272	Ubr1	AI504731	ubiquitin protein ligase E3 component n-recognin 1	protein-coding	0.125000	0.681592	
mm_128574.1	chr15	57708829	57709029	-	1	NA	NA	NA	14262	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.015000	0.467662	
mm_70207.1	chr7	144751926	144752126	-	1	NA	NA	NA	-13434	NM_001242349	101772	Mm.26700	NM_178642	ENSMUSG00000031075	Ano1	Tmem16a	anoctamin 1, calcium activated chloride channel	protein-coding	0.030000	0.582090	
mm_101038.1	chr11	8605123	8605323	-	1	NA	NA	NA	59312	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.030000	0.552239	
mm_139630.1	chr17	57367334	57367534	+	1	NA	NA	NA	8748	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.318408	-53(CTCTTTTAAAAG,-,0.00),-51(CTTTTAAAAGTA,+,0.00)
mm_168485.1	chr11	49198115	49198315	+	1	NA	NA	NA	-5285	NM_001024846	22720	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0.030000	0.487562	-29(GCCTATATAAGC,-,0.00)
mm_136060.1	chr16	84583426	84583626	-	1	NA	NA	NA	-96263	NR_040537	78023	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0.025000	0.467662	
mm_4760.1	chr1	182409153	182409353	+	1	NA	NA	NA	86	NM_173378	209456	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.145000	0.736318	
mm_10107.1	chr2	3649412	3649612	+	1	NA	NA	NA	-63946	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.010000	0.358209	
mm_106754.1	chr12	4133324	4133524	+	1	NA	NA	NA	27	NM_001159536	104111	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.135000	0.781095	
mm_143425.1	chr17	70849186	70849386	-	1	NA	NA	NA	504	NM_001164076	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.045000	0.562189	
mm_136703.1	chr17	7875262	7875462	+	1	NA	NA	NA	-50638	NM_145968	72536	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik	T cell activation Rho GTPase activating protein	protein-coding	0.035000	0.502488	
mm_160217.1	chr7	100006066	100006266	+	1	NA	NA	NA	-238	NM_133709	69121	Mm.285295	NM_133709	ENSMUSG00000030732	Chrdl2	1810022C01Rik|Chl2	chordin-like 2	protein-coding	0.140000	0.766169	
mm_23871.1	chr3	83029021	83029221	+	1	NA	NA	NA	2968	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.010000	0.427861	
mm_140349.1	chr17	86831139	86831339	+	1	NA	NA	NA	77375	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.020000	0.437811	
mm_26616.1	chr3	152395367	152395567	+	1	NA	NA	NA	-6	NM_001346655	108946	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.030000	0.452736	72(TGCCTTTAAAGA,-,0.00),73(GCCTTTAAAGAG,+,0.00),73(GCCTTTAAAGAG,-,0.00),75(CTTTAAAGAGAC,+,0.00)
mm_164699.1	chr17	49738639	49738839	+	1	NA	NA	NA	123567	NM_177052	319991	Mm.441340	NM_177052	ENSMUSG00000023999	Kif6	D130004B10Rik|D130084M03Rik	kinesin family member 6	protein-coding	0.010000	0.522388	
mm_119395.1	chr14	41137768	41137968	+	1	NA	NA	NA	6080	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.005000	0.467662	-66(CTTCTTATGGGC,+,0.00)
mm_28076.1	chr3	84450671	84450871	-	1	NA	NA	NA	28720	NM_001205355	229474	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0.010000	0.452736	
mm_81032.1	chr9	104569674	104569874	+	1	NA	NA	NA	-14	NM_028719	74020	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	0.020000	0.631841	
mm_112978.1	chr13	21312083	21312283	+	1	NA	NA	NA	-20	NM_145451	75512	Mm.46195	NM_145451	ENSMUSG00000004341	Gpx6	1700020G18Rik|Ry2d1|olfactory	glutathione peroxidase 6	protein-coding	0.010000	0.527363	
mm_28383.1	chr3	90000467	90000667	-	1	NA	NA	NA	1807	NR_045749	100503469	Mm.440636	NR_045749	ENSMUSG00000105552	Gm19710	-	predicted gene, 19710	ncRNA	0.000000	0.477612	
mm_109061.1	chr12	104342968	104343168	+	1	NA	NA	NA	4582	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.015000	0.502488	
mm_23012.1	chr3	34454290	34454490	+	1	NA	NA	NA	-105991	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA	0.065000	0.557214	
mm_145979.1	chr18	68046922	68047122	+	1	NA	NA	NA	113765	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.010000	0.333333	
mm_1254.1	chr1	63103050	63103250	+	1	NA	NA	NA	11117	NM_001081436	227195	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584|OTTMUSG00000002594	INO80 complex subunit D	protein-coding	0.020000	0.447761	
mm_88644.1	chr10	79948889	79949089	+	1	NA	NA	NA	-11163	NM_175450	216156	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.035000	0.572139	
mm_121261.1	chr14	103070204	103070404	+	1	NA	NA	NA	88	NM_001033242	211286	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0.155000	0.791045	
mm_91013.1	chr10	15263135	15263335	-	1	NA	NA	NA	502946	NM_008703	18101	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.025000	0.398010	-35(CTGTATAAAAAG,-,0.00)
mm_96460.1	chr11	67586598	67586798	+	1	NA	NA	NA	198	NM_001109657	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.010000	0.572139	
mm_85382.1	chr9	103226804	103227004	-	1	NA	NA	NA	3382	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.050000	0.557214	
mm_127833.1	chr15	6600358	6600558	-	1	NA	NA	NA	20611	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.005000	0.422886	
mm_160816.1	chr11	23665351	23665551	+	1	NA	NA	NA	-223	NM_028956	74467	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.065000	0.572139	
mm_129735.1	chr15	82147396	82147596	-	1	NA	NA	NA	227	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.135000	0.731343	
mm_22126.1	chr2	170357013	170357213	-	1	NA	NA	NA	752	NR_040610	73303	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.035000	0.567164	
mm_78548.1	chr9	35421479	35421679	+	1	NA	NA	NA	-30497	NM_021339	57810	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	0.175000	0.840796	
mm_108492.1	chr12	83682454	83682654	+	1	NA	NA	NA	-6009	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.015000	0.412935	
mm_37056.1	chr4	116048570	116048770	-	1	NA	NA	NA	5206	NM_028142	72181	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	0.010000	0.422886	
mm_10877.1	chr2	25242102	25242302	+	1	NA	NA	NA	-727	NM_176834	68846	Mm.24777	NM_176834	ENSMUSG00000044628	Rnf208	1110061N23Rik	ring finger protein 208	protein-coding	0.160000	0.791045	
mm_80472.1	chr9	78175271	78175471	+	1	NA	NA	NA	-543	NR_040401	320295	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	0.035000	0.477612	
mm_103328.1	chr11	74522673	74522873	-	1	NA	NA	NA	67385	NM_001015046	380711	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.130000	0.791045	
mm_98047.1	chr11	85713683	85713883	+	1	NA	NA	NA	5961	NR_045875	71489	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.035000	0.552239	
mm_39022.1	chr4	152131655	152131855	-	1	NA	NA	NA	-2830	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.100000	0.721393	
mm_36546.1	chr4	86669906	86670106	-	1	NA	NA	NA	53	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.055000	0.626866	
mm_85936.1	chr9	112097908	112098108	-	1	NA	NA	NA	20703	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.020000	0.442786	
mm_73950.1	chr8	120228369	120228569	+	1	NA	NA	NA	-239	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.175000	0.796020	
mm_172494.1	chr7	59229158	59229358	+	1	NA	NA	NA	506	NM_011668	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|mKIAA4216	ubiquitin protein ligase E3A	protein-coding	0.140000	0.766169	
mm_47888.1	chr5	134703485	134703685	-	1	NA	NA	NA	-14995	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.005000	0.601990	
mm_107680.1	chr12	54427940	54428140	+	1	NA	NA	NA	-36722	NR_033689	665239	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.030000	0.388060	-34(CCATTAATAGAA,+,0.00)
mm_18236.1	chr2	51973103	51973303	-	1	NA	NA	NA	5	NM_001141949	64685	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0.020000	0.427861	-24(CCGTCTAAAAAG,-,0.00)
mm_156715.1	chrX	159697220	159697420	+	1	NA	NA	NA	-11281	NM_021389	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.010000	0.537313	-37(GCTTTTTTAAGG,-,0.00),-35(TTTTTTAAGGAG,+,0.00)
mm_52058.1	chr6	97233155	97233355	+	1	NA	NA	NA	19525	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.005000	0.378109	-95(ATTTTTAAAAGG,-,0.00),-94(TTTTTAAAAGGG,+,0.00)
mm_149192.1	chr19	9939185	9939385	+	1	NA	NA	NA	-39752	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.020000	0.522388	
mm_11549.1	chr2	32715321	32715521	+	1	NA	NA	NA	-2449	NR_039536	100628606		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0.005000	0.497512	
mm_9512.1	chr1	173741636	173741836	-	1	NA	NA	NA	73	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.010000	0.487562	
mm_124539.1	chr14	122464077	122464277	-	1	NA	NA	NA	1481	NM_022987	65100	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	0.100000	0.686567	
mm_167324.1	chr8	68772356	68772556	+	1	NA	NA	NA	-21473	NM_001293791	70885	Mm.252421	NM_027590	ENSMUSG00000031864	Ints10	4921521J11Rik|AI462004	integrator complex subunit 10	protein-coding	0.000000	0.432836	
mm_1705.1	chr1	75210771	75210971	+	1	NA	NA	NA	42	NM_011494	20872	Mm.1155	NM_011494	ENSMUSG00000026201	Stk16	EDPK|Krct|MPSK|PKL12|TSF-1	serine/threonine kinase 16	protein-coding	0.095000	0.651741	
mm_118837.1	chr14	25607847	25608047	+	1	NA	NA	NA	4434	NM_001309430	100188919	Mm.473810	NM_001309430		Israa	-	immune system released activating agent	protein-coding	0.160000	0.771144	
mm_16961.1	chr2	17460505	17460705	-	1	NA	NA	NA	-102909	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	0.010000	0.482587	
mm_50858.1	chr6	55241054	55241254	+	1	NA	NA	NA	37771	NM_001142781	330323	Mm.268997	NM_177883	ENSMUSG00000038022	Fam188b	C330043M08Rik|Gm1406	family with sequence similarity 188, member B	protein-coding	0.005000	0.353234	
mm_2121.1	chr1	87896039	87896239	+	1	NA	NA	NA	-41840	NR_136921	100503175	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.010000	0.417910	
mm_59201.1	chr7	24507068	24507268	+	1	NA	NA	NA	81	NR_110958	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.100000	0.636816	-69(CTATTTATAAGG,-,0.00)
mm_52098.1	chr6	97853410	97853610	+	1	NA	NA	NA	46452	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.010000	0.422886	
mm_10178.1	chr2	4597179	4597379	+	1	NA	NA	NA	37525	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.025000	0.477612	
mm_48967.1	chr6	4623809	4624009	+	1	NA	NA	NA	22843	NM_145398	213819	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1	CAS1 domain containing 1	protein-coding	0.030000	0.482587	
mm_113216.1	chr13	25208289	25208489	+	1	NA	NA	NA	61607	NM_009513	22360	Mm.4766	NM_009513	ENSMUSG00000048978	Nrsn1	Neurensin-1|Neuro-p24|Vmp	neurensin 1	protein-coding	0.000000	0.457711	
mm_4129.1	chr1	170308760	170308960	+	1	NA	NA	NA	-1	NM_001039593	76925	Mm.33631	NM_001039593	ENSMUSG00000042800	1700015E13Rik	-	RIKEN cDNA 1700015E13 gene	protein-coding	0.030000	0.522388	
mm_6247.1	chr1	67116417	67116617	-	1	NA	NA	NA	-6510	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.020000	0.368159	-91(CTTTTTAAACAG,+,0.00)
mm_30251.1	chr3	146596477	146596677	-	1	NA	NA	NA	-572	NM_009474	22262	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.015000	0.477612	
mm_106737.1	chr12	3897321	3897521	+	1	NA	NA	NA	5677	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.025000	0.582090	
mm_138963.1	chr17	44628091	44628291	+	1	NA	NA	NA	107985	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.010000	0.393035	
mm_170804.1	chr2	175703626	175703826	-	1	NA	NA	NA	-28	NM_001177404	100303732	Mm.484983	NM_001177404	ENSMUSG00000095199	Zfp967	Gm14431|OTTMUSG00000016608	zinc finger protein 967	protein-coding	0.015000	0.492537	
mm_148564.1	chr19	4756442	4756642	+	1	NA	NA	NA	17	NM_025717	66704	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	0.155000	0.741294	
mm_119457.1	chr14	47066328	47066528	+	1	NA	NA	NA	-2549	NM_001310544	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.005000	0.407960	
mm_113852.1	chr13	47210746	47210946	+	1	NA	NA	NA	16843	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.000000	0.398010	-6(TTTTTTAAAGGC,+,0.00)
mm_156517.1	chrX	150588142	150588342	+	1	NA	NA	NA	-87	NM_029943	77622	Mm.440275	NM_029943	ENSMUSG00000025269	Apex2	C430040P13Rik|ape2	apurinic/apyrimidinic endonuclease 2	protein-coding	0.075000	0.626866	
mm_15817.1	chr2	164523574	164523774	+	1	NA	NA	NA	26149	NM_133779	78928	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	0.020000	0.522388	
mm_104629.1	chr11	97352256	97352456	-	1	NA	NA	NA	-283	NM_001081220	217143	Mm.32622	NM_175453	ENSMUSG00000070337	Gpr179	5330439C02Rik|Gpr158l1	G protein-coupled receptor 179	protein-coding	0.015000	0.547264	
mm_108967.1	chr12	102469040	102469240	+	1	NA	NA	NA	6	NM_001199004	27277	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	0.150000	0.746269	
mm_43064.1	chr5	124328060	124328260	+	1	NA	NA	NA	71	NM_001134717	72650	Mm.121658	NM_028310	ENSMUSG00000047635	2810006K23Rik	-	RIKEN cDNA 2810006K23 gene	protein-coding	0.075000	0.597015	
mm_14548.1	chr2	132847631	132847831	+	1	NA	NA	NA	-3	NM_025646	66586	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	0.025000	0.517413	62(GCTTTAAAACTC,+,0.00)
mm_106773.1	chr12	4600563	4600763	+	1	NA	NA	NA	7655	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.005000	0.447761	-51(GCTTTTAGAAAG,+,0.00)
mm_65396.1	chr7	25132348	25132548	-	1	NA	NA	NA	12	NM_011138	18987	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.030000	0.621891	
mm_59120.1	chr7	19851958	19852158	+	1	NA	NA	NA	55	NM_001270489	100502736	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0.040000	0.592040	
mm_85699.1	chr9	108101832	108102032	-	1	NA	NA	NA	-7452	NM_146226	235606	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0.010000	0.437811	
mm_78602.1	chr9	37527953	37528153	+	1	NA	NA	NA	-36	NR_136939	69524	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	0.075000	0.676617	
mm_51636.1	chr6	85911776	85911976	+	1	NA	NA	NA	3801	NM_023160	66116	Mm.13036	NM_023160	ENSMUSG00000057103	Nat8f1	1110002I11Rik|AI266962|Cml1	N-acetyltransferase 8 (GCN5-related) family member 1	protein-coding	0.015000	0.512438	
mm_26174.1	chr3	138288703	138288903	+	1	NA	NA	NA	11158	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.025000	0.507463	
mm_38628.1	chr4	142084574	142084774	-	1	NA	NA	NA	-370	NM_145402	214359	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0.070000	0.616915	
mm_152781.1	chr19	21383802	21384002	-	1	NA	NA	NA	88759	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.005000	0.472637	
mm_85762.1	chr9	108655770	108655970	-	1	NA	NA	NA	-6228	NM_020520	57279	Mm.29666	NM_020520	ENSMUSG00000032602	Slc25a20	1110007P09Rik|C78826|Cact|mCAC	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	protein-coding	0.045000	0.462687	-35(CTGCATAAAAAG,-,0.00)
mm_23090.1	chr3	37062709	37062909	+	1	NA	NA	NA	-847	NM_009350	21744	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	0.000000	0.368159	-28(CACTATTTAAAC,-,0.00),45(CATCTTAAAAGG,-,0.00),47(TCTTAAAAGGGG,+,0.00)
mm_173272.1	chrX	98032915	98033115	-	1	NA	NA	NA	-115742	NM_013476	11835	Mm.39005	NM_013476	ENSMUSG00000046532	Ar	AW320017|Tfm	androgen receptor	protein-coding	0.025000	0.537313	
mm_156063.1	chrX	109160364	109160564	+	1	NA	NA	NA	-36292	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.005000	0.383085	
mm_86097.1	chr9	115293349	115293549	-	1	NA	NA	NA	-11379	NR_029430	111186	Mm.484753	NR_029430		Stmn1-rs1	Lag-rs1|Lap18-rs1	stathmin 1, related sequence 1	pseudo	0.015000	0.363184	
mm_43457.1	chr5	136236945	136237145	+	1	NA	NA	NA	7895	NM_001302939	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.020000	0.517413	
mm_16864.1	chr2	11777424	11777624	-	1	NA	NA	NA	3	NM_015792	50755	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	0.110000	0.696517	
mm_63269.1	chr7	126760495	126760695	+	1	NA	NA	NA	969	NM_011952	26417	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.005000	0.567164	
mm_78802.1	chr9	44047526	44047726	+	1	NA	NA	NA	4242	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.015000	0.532338	
mm_56947.1	chr6	119969201	119969401	-	1	NA	NA	NA	65010	NR_030487	735290		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	0.005000	0.472637	
mm_125787.1	chr15	74716612	74716812	+	1	NA	NA	NA	1873	NM_028216	72373	Mm.46395	NM_028216	ENSMUSG00000022598	Psca	2210408B04Rik	prostate stem cell antigen	protein-coding	0.010000	0.611940	
mm_167401.1	chr8	95713851	95714051	+	1	NA	NA	NA	-1962	NM_001035123	66083	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	0.000000	0.562189	
mm_47007.1	chr5	115474458	115474658	-	1	NA	NA	NA	8292	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.050000	0.517413	
mm_55659.1	chr6	72390565	72390765	-	1	NA	NA	NA	2	NM_016794	22320	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.035000	0.572139	
mm_30325.1	chr3	151731843	151732043	-	1	NA	NA	NA	18016	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.000000	0.263682	
mm_150762.1	chr19	44237629	44237829	+	1	NA	NA	NA	34441	NM_024450	30049	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	0.035000	0.502488	-65(CCTTTTATAGTG,+,0.00)
mm_135331.1	chr16	38828631	38828831	-	1	NA	NA	NA	18	NM_029042	74663	Mm.50263	NM_029042	ENSMUSG00000022798	4930435E12Rik	TSCPA	RIKEN cDNA 4930435E12 gene	protein-coding	0.010000	0.527363	
mm_132501.1	chr16	36951089	36951289	+	1	NA	NA	NA	16206	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.015000	0.552239	
mm_136175.1	chr16	88774104	88774304	-	1	NA	NA	NA	2	NM_027170	69696	Mm.358728	NM_027170	ENSMUSG00000048830	2310057N15Rik	Krtap13-1	RIKEN cDNA 2310057N15 gene	protein-coding	0.005000	0.452736	-34(GAGTATATAAAC,-,0.00)
mm_146838.1	chr18	22884154	22884354	-	1	NA	NA	NA	154409	NM_001161483	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding	0.000000	0.258706	-51(AACTCTAAAAAG,-,0.00)
mm_41557.1	chr5	93093336	93093536	+	1	NA	NA	NA	20	NM_001347377	52398	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.120000	0.751244	
mm_108418.1	chr12	81971112	81971312	+	1	NA	NA	NA	111182	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	0.025000	0.472637	
mm_127454.1	chr15	101270788	101270988	+	1	NA	NA	NA	4042	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.055000	0.611940	
mm_18247.1	chr2	52201368	52201568	-	1	NA	NA	NA	-89534	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.010000	0.412935	
mm_47030.1	chr5	115652883	115653083	-	1	NA	NA	NA	7410	NR_105997	102465623		NR_105997	ENSMUSG00000099254	Mir7030	Gm27267|mmu-mir-7030	microRNA 7030	ncRNA	0.040000	0.626866	
mm_99120.1	chr11	100145455	100145655	+	1	NA	NA	NA	371	NM_008471	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.045000	0.567164	
mm_49711.1	chr6	34419365	34419565	+	1	NA	NA	NA	7103	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.005000	0.388060	
mm_136601.1	chr17	5152553	5152753	+	1	NA	NA	NA	157579	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.005000	0.482587	
mm_165226.1	chr2	52424830	52425030	-	1	NA	NA	NA	-56	NM_182994	75423	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.130000	0.791045	
mm_86443.1	chr10	4106222	4106422	+	1	NA	NA	NA	133247	NM_172308	270685	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.020000	0.507463	
mm_42859.1	chr5	122219143	122219343	+	1	NA	NA	NA	8956	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.010000	0.557214	
mm_169224.1	chr13	66862030	66862230	-	1	NA	NA	NA	43220	NM_026219	67530	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	0.020000	0.532338	
mm_170379.1	chr1	85598681	85598881	-	1	NA	NA	NA	29	NM_030194	109032	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|ENSMUSG00000075603|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.025000	0.552239	
mm_18839.1	chr2	75133577	75133777	-	1	NA	NA	NA	307865	NM_016804	53375	Mm.292613	NM_016804	ENSMUSG00000027099	Mtx2	1500012G02Rik	metaxin 2	protein-coding	0.015000	0.497512	
mm_130227.1	chr15	96285415	96285615	-	1	NA	NA	NA	-2007	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.125000	0.706468	
mm_73971.1	chr8	120488960	120489160	+	1	NA	NA	NA	194	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.040000	0.442786	
mm_91997.1	chr10	62187389	62187589	-	1	NA	NA	NA	6738	NR_106122	102465767		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.015000	0.412935	
mm_73847.1	chr8	117700931	117701131	+	1	NA	NA	NA	-915	NM_008290	15486	Mm.276466	NM_008290	ENSMUSG00000031844	Hsd17b2	AI194836|AI194967|AI255511	hydroxysteroid (17-beta) dehydrogenase 2	protein-coding	0.030000	0.477612	
mm_170172.1	chr17	56462025	56462225	-	1	NA	NA	NA	96	NM_001252456	19280	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.080000	0.651741	
mm_103705.1	chr11	79516528	79516728	-	1	NA	NA	NA	7134	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.015000	0.407960	
mm_37556.1	chr4	126163186	126163386	-	1	NA	NA	NA	55	NM_001162533	66938	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	0.055000	0.631841	
mm_34813.1	chr4	154936897	154937097	+	1	NA	NA	NA	-8920	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.010000	0.457711	
mm_21357.1	chr2	157124976	157125176	-	1	NA	NA	NA	10146	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.005000	0.497512	
mm_19696.1	chr2	103760832	103761032	-	1	NA	NA	NA	318	NM_153126	98956	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.070000	0.597015	
mm_8710.1	chr1	158968729	158968929	-	1	NA	NA	NA	-11391	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding	0.015000	0.437811	
mm_96616.1	chr11	69098944	69099144	+	1	NA	NA	NA	88	NM_011065	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.065000	0.582090	
mm_79905.1	chr9	65412684	65412884	+	1	NA	NA	NA	9989	NM_178933	330962	Mm.335247	NM_178933	ENSMUSG00000053862	Slc51b	Ostb	solute carrier family 51, beta subunit	protein-coding	0.030000	0.432836	
mm_82541.1	chr9	20879601	20879801	-	1	NA	NA	NA	9	NM_145154	70726	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	0.025000	0.572139	
mm_49023.1	chr6	4759432	4759632	+	1	NA	NA	NA	12226	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.015000	0.393035	
mm_131347.1	chr16	13671830	13672030	+	1	NA	NA	NA	72	NM_025653	67118	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	0.095000	0.631841	
mm_103073.1	chr11	69880878	69881078	-	1	NA	NA	NA	7	NM_153143	216858	Mm.239498	NM_153143	ENSMUSG00000046731	Kctd11	AF465352|Ren	potassium channel tetramerisation domain containing 11	protein-coding	0.065000	0.676617	-35(TCGCTTAAAGGG,-,0.00),-33(GCTTAAAGGGCC,+,0.00)
mm_91475.1	chr10	34207738	34207938	-	1	NA	NA	NA	-287	NM_172508	212898	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.025000	0.462687	
mm_149618.1	chr19	16781016	16781216	+	1	NA	NA	NA	-183	NM_173028	271564	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.140000	0.691542	
mm_110077.1	chr12	24493367	24493567	-	1	NA	NA	NA	-5114	NM_020614	21340	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	0.045000	0.547264	59(CTCTTTTAAAGC,-,0.00),60(TCTTTTAAAGCT,+,0.00)
mm_132875.1	chr16	48629900	48630100	+	1	NA	NA	NA	141956	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.015000	0.393035	
mm_105720.1	chr11	108533596	108533796	-	1	NA	NA	NA	108430	NM_029606	76380	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0.005000	0.407960	
mm_155449.1	chrX	73495221	73495421	+	1	NA	NA	NA	-7765	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.000000	0.452736	
mm_131454.1	chr16	16870786	16870986	+	1	NA	NA	NA	150	NM_011624	21976	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding	0.105000	0.711443	
mm_136069.1	chr16	84735713	84735913	-	1	NA	NA	NA	-511	NM_017404	27393	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	0.060000	0.492537	
mm_112140.1	chr12	113140002	113140202	-	1	NA	NA	NA	-134	NM_024223	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.095000	0.631841	
mm_133723.1	chr16	93711880	93712080	+	1	NA	NA	NA	73	NM_027293	70028	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0.135000	0.766169	
mm_6216.1	chr1	66849597	66849797	-	1	NA	NA	NA	13612	NM_007381	11363	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.050000	0.477612	
mm_93408.1	chr10	107912279	107912479	-	1	NA	NA	NA	-245	NM_001177567	628870	Mm.336090	NM_001177567	ENSMUSG00000091455	Otogl	EG628870|Gm6924	otogelin-like	protein-coding	0.020000	0.497512	-64(GTGTATTAATGG,-,0.00)
mm_33989.1	chr4	137862144	137862344	+	1	NA	NA	NA	7	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.095000	0.696517	
mm_88411.1	chr10	77032629	77032829	+	1	NA	NA	NA	-10	NM_001199271	20509	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.060000	0.676617	58(GGCTCGTAAAGG,-,0.00)
mm_43.1	chr1	6489088	6489288	+	1	NA	NA	NA	1957	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.005000	0.402985	
mm_26479.1	chr3	144677590	144677790	+	1	NA	NA	NA	42645	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.025000	0.492537	
mm_147217.1	chr18	37997434	37997634	-	1	NA	NA	NA	40	NM_139206	106952	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	0.010000	0.557214	
mm_57970.1	chr6	135346362	135346562	-	1	NA	NA	NA	-16469	NM_010128	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.010000	0.457711	
mm_35782.1	chr4	46413388	46413588	-	1	NA	NA	NA	-9305	NM_053149	93966	Mm.25793	NM_053149	ENSMUSG00000028332	Hemgn	4921524M03Rik|AI317176|EDAG|Hgn|mNDR	hemogen	protein-coding	0.020000	0.512438	
mm_94759.1	chr11	21148996	21149196	+	1	NA	NA	NA	57772	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.005000	0.393035	53(TTGTCTAAAAGG,-,0.00)
mm_172681.1	chr8	52197032	52197232	-	1	NA	NA	NA	-1314570	NM_001205054	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.070000	0.502488	
mm_67245.1	chr7	75309063	75309263	-	1	NA	NA	NA	99	NM_153579	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.030000	0.582090	
mm_20605.1	chr2	131454306	131454506	-	1	NA	NA	NA	-37456	NM_001177834	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.015000	0.462687	
mm_60366.1	chr7	44441975	44442175	+	1	NA	NA	NA	-412	NM_198250	272381	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	0.020000	0.592040	
mm_32348.1	chr4	104913419	104913619	+	1	NA	NA	NA	63	NM_001285952	242594	Mm.65181	NM_001162980	ENSMUSG00000078612	1700024P16Rik	C1orf168|Gm620	RIKEN cDNA 1700024P16 gene	protein-coding	0.050000	0.691542	
mm_159178.1	chr2	111335824	111336024	-	1	NA	NA	NA	152	NM_146907	258909	Mm.377746	NM_146907	ENSMUSG00000096554	Olfr1282	MOR248-16|MOR248-2|Olfr1557	olfactory receptor 1282	protein-coding	0.000000	0.417910	
mm_15162.1	chr2	154009767	154009967	+	1	NA	NA	NA	1591	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.010000	0.422886	
mm_51454.1	chr6	81911850	81912050	+	1	NA	NA	NA	-1150	NR_046040	74220	Mm.490521	NR_046040	ENSMUSG00000101404	1700009C05Rik	-	RIKEN cDNA 1700009C05 gene	ncRNA	0.005000	0.537313	-33(CTCTATAAAAGG,-,0.00)
mm_42214.1	chr5	113043328	113043528	+	1	NA	NA	NA	26689	NM_007773	12961	Mm.1215	NM_007773	ENSMUSG00000042240	Crybb2	Cryb-2	crystallin, beta B2	protein-coding	0.000000	0.497512	
mm_32260.1	chr4	102581006	102581206	+	1	NA	NA	NA	-6452	NM_001177982	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.010000	0.472637	-85(TTTTTTAAACAC,+,0.00)
mm_108484.1	chr12	83664052	83664252	+	1	NA	NA	NA	-24411	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.105000	0.527363	
mm_74519.1	chr8	9144443	9144643	-	1	NA	NA	NA	-126	NR_073360	74688	Mm.159298	NR_073360	ENSMUSG00000109215	4930453L07Rik	-	RIKEN cDNA 4930453L07 gene	ncRNA	0.010000	0.442786	73(TGCTATTTAAAG,-,0.00)
mm_90572.1	chr10	128231999	128232199	+	1	NA	NA	NA	36	NM_001136082	21853	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0.105000	0.736318	
mm_169343.1	chr14	14116298	14116498	-	1	NA	NA	NA	4506	NM_025550	66413	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0.035000	0.368159	31(TCCTTTTAAAGA,-,0.00),32(CCTTTTAAAGAC,+,0.00)
mm_44024.1	chr5	147429870	147430070	+	1	NA	NA	NA	-610	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.080000	0.631841	
mm_148731.1	chr19	5877807	5878007	+	1	NA	NA	NA	-559	NM_134154	107375	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0.025000	0.482587	-78(GTTTTTAAAGAA,+,0.00)
mm_148515.1	chr19	4232317	4232517	+	1	NA	NA	NA	2	NR_132280	69745	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0.010000	0.562189	
mm_124347.1	chr14	103998179	103998379	-	1	NA	NA	NA	28863	NR_045953	73877	Mm.399172	NR_045953		4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.000000	0.522388	
mm_151912.1	chr19	5799583	5799783	-	1	NA	NA	NA	2989	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.000000	0.363184	45(GCTTTAATGACC,+,0.00),81(GCTTTTATATTA,+,0.00)
mm_128393.1	chr15	43170874	43171074	-	1	NA	NA	NA	-156	NM_172815	239405	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.030000	0.527363	
mm_148811.1	chr19	6282653	6282853	+	1	NA	NA	NA	5857	NM_010119	13660	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.000000	0.467662	
mm_36805.1	chr4	103173390	103173590	-	1	NA	NA	NA	41394	NM_177732	242585	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.000000	0.388060	
mm_3214.1	chr1	135840584	135840784	+	1	NA	NA	NA	-177	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.005000	0.492537	
mm_166662.1	chr6	88798117	88798317	+	1	NA	NA	NA	43718	NM_030251	80283	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.005000	0.328358	
mm_78354.1	chr9	25491032	25491232	+	1	NA	NA	NA	9535	NM_026189	67484	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.005000	0.298507	-52(CCTTTTATATTT,+,0.00)
mm_145232.1	chr18	50134658	50134858	+	1	NA	NA	NA	6557	NM_008292	15488	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.035000	0.562189	-52(GTCTATTAAAAA,-,0.00)
mm_48864.1	chr5	149827564	149827764	-	1	NA	NA	NA	-15913	NR_077242	100861794	Mm.402054	NR_077242	ENSMUSG00000106740	Gm21221	-	predicted gene, 21221	ncRNA	0.005000	0.343284	-73(GCTTTTAAATGG,+,0.00),-73(GCTTTTAAATGG,-,0.00)
mm_20178.1	chr2	122594809	122595009	-	1	NA	NA	NA	16368	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.010000	0.233831	2(GCTTTTAAACAA,+,0.00)
mm_81845.1	chr9	118556458	118556658	+	1	NA	NA	NA	-50151	NM_133721	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.020000	0.527363	
mm_89319.1	chr10	87930764	87930964	+	1	NA	NA	NA	-35807	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.020000	0.402985	52(TTGTTTAAAAAG,-,0.00)
mm_121982.1	chr14	25858063	25858263	-	1	NA	NA	NA	16008	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.020000	0.472637	
mm_155784.1	chrX	96456323	96456523	+	1	NA	NA	NA	77	NM_001159627	15203	Mm.277092	NM_010417	ENSMUSG00000031209	Heph	C130006F04Rik|Cpl|mKIAA0698|sla	hephaestin	protein-coding	0.025000	0.507463	
mm_7193.1	chr1	92919236	92919436	-	1	NA	NA	NA	8511	NM_181405	108657	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	0.040000	0.577114	-61(GGCTATAAGGGC,-,0.00)
mm_89438.1	chr10	91170624	91170824	+	1	NA	NA	NA	-174	NM_001283048	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.085000	0.532338	
mm_148717.1	chr19	5822249	5822449	+	1	NA	NA	NA	-19677	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.025000	0.512438	-55(CCTTTTCTGGAG,+,0.00)
mm_82460.1	chr9	15628197	15628397	-	1	NA	NA	NA	-364	NM_181816	234964	Mm.32237	NM_181816	ENSMUSG00000039977	Ccdc67	4933401K09Rik|Deup1	coiled-coil domain containing 67	protein-coding	0.020000	0.477612	78(GGGTTTAAATGG,-,0.00)
mm_31644.1	chr4	59581579	59581779	+	1	NA	NA	NA	116	NM_024255	72479	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0.080000	0.616915	
mm_153637.1	chr19	44069599	44069799	-	1	NA	NA	NA	-13	NM_145502	226144	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	0.125000	0.746269	
mm_148211.1	chr18	80198382	80198582	-	1	NA	NA	NA	2137	NM_199197	68731	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	0.025000	0.398010	-34(CTCTTTATAAAG,-,0.00),-32(CTTTATAAAGAT,+,0.00)
mm_89984.1	chr10	111984738	111984938	+	1	NA	NA	NA	12143	NM_178610	52705	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0.020000	0.388060	
mm_158728.1	chrX	163958009	163958209	-	1	NA	NA	NA	557	NM_009453	22184	Mm.426178	NM_009453	ENSMUSG00000031370	Zrsr2	35kDa|5031411E02Rik|A230052C13Rik|C77286|U2af1-rs2|URP	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	protein-coding	0.130000	0.746269	
mm_145463.1	chr18	60246625	60246825	+	1	NA	NA	NA	26542	NM_001034859	225594	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	0.010000	0.477612	
mm_37777.1	chr4	130139056	130139256	-	1	NA	NA	NA	6	NM_198959	230777	Mm.246595	NM_198959	ENSMUSG00000028778	Hcrtr1	Ox1r|ox-1-R|ox1-R	hypocretin (orexin) receptor 1	protein-coding	0.110000	0.751244	
mm_167651.1	chr9	66060033	66060233	+	1	NA	NA	NA	-36	NM_011149	19035	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	0.140000	0.736318	
mm_172869.1	chr9	41911738	41911938	-	1	NA	NA	NA	212451	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.070000	0.552239	-32(CCCTATAAAAAG,-,0.00)
mm_36074.1	chr4	58008996	58009196	-	1	NA	NA	NA	28	NM_026132	67402	Mm.87357	NM_026132	ENSMUSG00000038709	Txndc8	4930429J24Rik|Sptrx-3|Sptrx3|Trx6	thioredoxin domain containing 8	protein-coding	0.005000	0.437811	
mm_88379.1	chr10	76442281	76442481	+	1	NA	NA	NA	531	NM_008787	18541	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	0.090000	0.636816	
mm_57448.1	chr6	125049751	125049951	-	1	NA	NA	NA	2	NR_130997	78202	Mm.445941	NR_130997	ENSMUSG00000108034	4930557K07Rik	-	RIKEN cDNA 4930557K07 gene	ncRNA	0.055000	0.611940	
mm_100686.1	chr11	3504700	3504900	-	1	NA	NA	NA	21	NM_172439	170835	Mm.24313	NM_172439	ENSMUSG00000034570	Inpp5j	Pib5pa|Pipp	inositol polyphosphate 5-phosphatase J	protein-coding	0.010000	0.601990	
mm_67321.1	chr7	79715619	79715819	-	1	NA	NA	NA	-1533	NM_001291222	16576	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0.115000	0.756219	
mm_132640.1	chr16	39984507	39984707	+	1	NA	NA	NA	1082262	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.060000	0.616915	
mm_25324.1	chr3	106562072	106562272	+	1	NA	NA	NA	-14370	NM_133869	99712	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.000000	0.273632	
mm_5844.1	chr1	52963129	52963329	-	1	NA	NA	NA	-10389	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.005000	0.437811	
mm_168943.1	chr12	72442064	72442264	-	1	NA	NA	NA	-85	NM_001142729	78257	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	0.045000	0.557214	
mm_103815.1	chr11	83003003	83003203	-	1	NA	NA	NA	-11273	NM_172796	237886	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.010000	0.462687	
mm_140725.1	chr17	15476079	15476279	-	1	NA	NA	NA	22097	NM_011185	19170	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	0.020000	0.517413	
mm_54877.1	chr6	42669765	42669965	-	1	NA	NA	NA	23194	NM_029930	77574	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding	0.005000	0.422886	14(CACCCTAAAAGC,-,0.00)
mm_24369.1	chr3	90104050	90104250	+	1	NA	NA	NA	18	NM_029937	77595	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	0.045000	0.567164	
mm_14210.1	chr2	127270621	127270821	+	1	NA	NA	NA	492	NM_139308	99138	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0.155000	0.741294	
mm_30715.1	chr4	12906761	12906961	+	1	NA	NA	NA	24	NM_001171801	208820	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding	0.065000	0.681592	
mm_46474.1	chr5	105131279	105131479	-	1	NA	NA	NA	8173	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.393035	
mm_27949.1	chr3	79825399	79825599	-	1	NA	NA	NA	17163	NM_027495	70652	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.015000	0.452736	
mm_144949.1	chr18	37807751	37807951	+	1	NA	NA	NA	1441	NM_033581	93706	Mm.247203	NM_033581	ENSMUSG00000102918	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding	0.040000	0.492537	
mm_15014.1	chr2	152604306	152604506	+	1	NA	NA	NA	79	NM_001037247	266620	Mm.330669	NM_001037247	ENSMUSG00000044863	Defb36	BD-36|Defb123|mBD-36	defensin beta 36	protein-coding	0.065000	0.597015	
mm_5980.1	chr1	58392653	58392853	-	1	NA	NA	NA	-383	NM_025824	66882	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.080000	0.711443	
mm_94705.1	chr11	20248855	20249055	+	1	NA	NA	NA	469	NM_172260	216543	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.085000	0.616915	
mm_146060.1	chr18	69683025	69683225	+	1	NA	NA	NA	-242434	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.015000	0.348259	
mm_89017.1	chr10	82083239	82083439	+	1	NA	NA	NA	35212	NM_001024626	408062	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	0.075000	0.577114	
mm_83005.1	chr9	36756906	36757106	-	1	NA	NA	NA	10572	NM_008408	16430	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	0.000000	0.288557	61(TCTTTTAGACAG,+,0.00)
mm_125742.1	chr15	73676568	73676768	+	1	NA	NA	NA	30837	NM_173365	239530	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	0.015000	0.477612	
mm_76818.1	chr8	104534496	104534696	-	1	NA	NA	NA	41	NM_144931	234664	Mm.237670	NM_144931	ENSMUSG00000031878	Nae1	59kDa|Appbp1	NEDD8 activating enzyme E1 subunit 1	protein-coding	0.110000	0.686567	
mm_53039.1	chr6	124570283	124570483	+	1	NA	NA	NA	-47	NM_001113356	667277	Mm.481484	NM_001113356	ENSMUSG00000098470	C1rb	Gm8551|mC1rB	complement component 1, r subcomponent B	protein-coding	0.000000	0.482587	
mm_12504.1	chr2	71873202	71873402	+	1	NA	NA	NA	78	NM_172665	228026	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.135000	0.771144	
mm_81132.1	chr9	106499889	106500089	+	1	NA	NA	NA	22	NM_001146701	74267	Mm.116682	NM_028843	ENSMUSG00000066383	Iqcf1	1700055J15Rik	IQ motif containing F1	protein-coding	0.010000	0.512438	
mm_53529.1	chr6	136553884	136554084	+	1	NA	NA	NA	35133	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.020000	0.452736	
mm_40145.1	chr5	35278819	35279019	+	1	NA	NA	NA	353	NM_007418	11553	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding	0.115000	0.696517	
mm_147314.1	chr18	41982456	41982656	-	1	NA	NA	NA	16493	NM_001033426	332309	Mm.240520	NM_001033426	ENSMUSG00000073574	Grxcr2	Gm851	glutaredoxin, cysteine rich 2	protein-coding	0.000000	0.437811	
mm_37052.1	chr4	116017994	116018194	-	1	NA	NA	NA	-192	NM_010173	14073	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	0.015000	0.512438	
mm_40028.1	chr5	33417756	33417956	+	1	NA	NA	NA	16234	NM_011320	672284		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 transcription factor related, locus 1 (Drosophila)	protein-coding	0.000000	0.402985	30(TGCTATATAAAC,-,0.00)
mm_53390.1	chr6	129545310	129545510	+	1	NA	NA	NA	-12126	NR_045270	100504641	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0.010000	0.457711	-14(GGCCTTATAAAC,-,0.00),-12(CCTTATAAACCG,+,0.00),20(GCTTATTTAAGG,-,0.00)
mm_86953.1	chr10	24915610	24915810	+	1	NA	NA	NA	5046	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.015000	0.477612	
mm_124799.1	chr15	8444869	8445069	+	1	NA	NA	NA	-506	NM_201232	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.100000	0.631841	
mm_42318.1	chr5	114897406	114897606	+	1	NA	NA	NA	572	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.010000	0.487562	
mm_139521.1	chr17	56613309	56613509	+	1	NA	NA	NA	14	NM_018730	54217	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	0.085000	0.666667	
mm_4491.1	chr1	173641115	173641315	+	1	NA	NA	NA	10356	NM_175026	236312	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	0.005000	0.447761	
mm_58287.1	chr6	145863531	145863731	-	1	NA	NA	NA	1789	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.080000	0.646766	
mm_20566.1	chr2	131081330	131081530	-	1	NA	NA	NA	5335	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.040000	0.587065	
mm_116895.1	chr13	55362728	55362928	-	1	NA	NA	NA	-45	NM_025828	66890	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding	0.060000	0.601990	
mm_150238.1	chr19	34067296	34067496	+	1	NA	NA	NA	38	NM_027340	70166	Mm.75602	NM_027340	ENSMUSG00000024770	Lipn	2210418G03Rik|Lipl4	lipase, family member N	protein-coding	0.025000	0.497512	
mm_160878.1	chr11	69100394	69100594	+	1	NA	NA	NA	336	NM_001159367	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.020000	0.507463	
mm_36318.1	chr4	70252074	70252274	-	1	NA	NA	NA	158261	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.005000	0.472637	
mm_138312.1	chr17	34648155	34648355	+	1	NA	NA	NA	1109	NM_017406	12915	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	0.020000	0.552239	
mm_116866.1	chr13	55006824	55007024	-	1	NA	NA	NA	13895	NM_001206390	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.025000	0.512438	
mm_11907.1	chr2	50910086	50910286	+	1	NA	NA	NA	502	NR_033595	227885	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	OTTMUSG00000012426	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.000000	0.487562	
mm_41420.1	chr5	90887813	90888013	+	1	NA	NA	NA	-3332	NM_008176	14825	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.015000	0.417910	
mm_170051.1	chr17	28418415	28418615	-	1	NA	NA	NA	-53372	NM_021478	22157	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.010000	0.447761	
mm_57520.1	chr6	125533253	125533453	-	1	NA	NA	NA	-19595	NM_011708	22371	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.025000	0.522388	
mm_43460.1	chr5	136564105	136564305	+	1	NA	NA	NA	1776	NM_001291239	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.010000	0.527363	
mm_4579.1	chr1	178187596	178187796	+	1	NA	NA	NA	279	NM_024282	78825	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	0.095000	0.746269	
mm_8659.1	chr1	156474394	156474594	-	1	NA	NA	NA	-166	NM_009230	20652	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0.020000	0.532338	
mm_82461.1	chr9	15628234	15628434	-	1	NA	NA	NA	-401	NM_181816	234964	Mm.32237	NM_181816	ENSMUSG00000039977	Ccdc67	4933401K09Rik|Deup1	coiled-coil domain containing 67	protein-coding	0.020000	0.472637	
mm_154802.1	chrX	13291385	13291585	+	1	NA	NA	NA	10463	NM_010028	13205	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	0.005000	0.437811	
mm_98078.1	chr11	86544861	86545061	+	1	NA	NA	NA	-30	NM_001199045	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding	0.070000	0.517413	
mm_2308.1	chr1	91540947	91541147	+	1	NA	NA	NA	-33	NM_023046	65247	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	0.090000	0.661692	
mm_115673.1	chr13	12650103	12650303	-	1	NA	NA	NA	192	NR_003568	664862	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik|ENSMUSG00000075118	G protein-coupled receptor 137B, pseudogene	pseudo	0.105000	0.671642	
mm_69620.1	chr7	137314097	137314297	-	1	NA	NA	NA	248	NM_001113415	13593	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.160000	0.741294	
mm_65980.1	chr7	30445398	30445598	-	1	NA	NA	NA	84	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.145000	0.815920	
mm_13056.1	chr2	91113168	91113368	+	1	NA	NA	NA	-4876	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.020000	0.547264	
mm_18201.1	chr2	45559835	45560035	-	1	NA	NA	NA	-136670	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.000000	0.393035	
mm_8743.1	chr1	160250005	160250205	-	1	NA	NA	NA	-37213	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0.010000	0.432836	
mm_141517.1	chr17	31681499	31681699	-	1	NA	NA	NA	3668	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.010000	0.552239	
mm_99189.1	chr11	100884539	100884739	+	1	NA	NA	NA	24155	NM_001164062	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.015000	0.412935	
mm_106676.1	chr11	121745571	121745771	-	1	NA	NA	NA	43244	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.005000	0.507463	
mm_140764.1	chr17	17624469	17624669	-	1	NA	NA	NA	-80	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.110000	0.691542	
mm_125011.1	chr15	25622474	25622674	+	1	NA	NA	NA	24	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.100000	0.676617	
mm_57033.1	chr6	122325594	122325794	-	1	NA	NA	NA	13963	NM_001042623	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.015000	0.606965	
mm_138698.1	chr17	35980764	35980964	+	1	NA	NA	NA	909	NM_008136	14670	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	0.030000	0.547264	
mm_64391.1	chr7	142488954	142489154	+	1	NA	NA	NA	-9782	NM_001347549	21957	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	0.005000	0.492537	
mm_38518.1	chr4	141415922	141416122	-	1	NA	NA	NA	-34	NM_019701	56365	Mm.24882	NM_019701	ENSMUSG00000006216	Clcnkb	CLCKB|Clc-Ka|Clck2|Clcnk1l	chloride channel, voltage-sensitive Kb	protein-coding	0.005000	0.567164	
mm_55565.1	chr6	71360756	71360956	-	1	NA	NA	NA	-12571	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.010000	0.507463	
mm_48212.1	chr5	137610339	137610539	-	1	NA	NA	NA	965	NM_008788	18542	Mm.262345	NM_008788	ENSMUSG00000029718	Pcolce	Astt-2|Astt2|P14|PCPE-1	procollagen C-endopeptidase enhancer protein	protein-coding	0.025000	0.572139	
mm_150329.1	chr19	34574704	34574904	+	1	NA	NA	NA	-8725	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.000000	0.363184	
mm_102435.1	chr11	59506331	59506531	-	1	NA	NA	NA	209	NM_001291014	268417	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0.135000	0.805970	
mm_161998.1	chr19	39812645	39812845	-	1	NA	NA	NA	69	NM_010004	13099	Mm.353875	NM_010004	ENSMUSG00000025004	Cyp2c40	AI265721|AI662255	cytochrome P450, family 2, subfamily c, polypeptide 40	protein-coding	0.010000	0.427861	
mm_1313.1	chr1	65048459	65048659	+	1	NA	NA	NA	2604	NM_007777	12968	Mm.258170	NM_007777	ENSMUSG00000070870	Cryge	Cryg-2|Cryg-6|DGcry-2|Elo	crystallin, gamma E	protein-coding	0.005000	0.398010	
mm_147707.1	chr18	60812127	60812327	-	1	NA	NA	NA	151	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.020000	0.572139	
mm_162578.1	chr1	177729739	177729939	+	1	NA	NA	NA	25	NM_027077	69428	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.005000	0.497512	
mm_73771.1	chr8	116501603	116501803	+	1	NA	NA	NA	-3312	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.040000	0.467662	
mm_26427.1	chr3	142618240	142618440	+	1	NA	NA	NA	-2323	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.005000	0.368159	
mm_24453.1	chr3	90613084	90613284	+	1	NA	NA	NA	290	NM_011313	20200	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0.070000	0.656716	
mm_172753.1	chr8	85111847	85112047	-	1	NA	NA	NA	11148	NM_001037745	244556	Mm.334682	NM_001037745	ENSMUSG00000074194	Zfp791	EG244556	zinc finger protein 791	protein-coding	0.085000	0.557214	78(GGGTTTAAAAAA,-,0.00)
mm_72916.1	chr8	91073685	91073885	+	1	NA	NA	NA	3728	NM_001282000	19651	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	retinoblastoma-like 2	protein-coding	0.015000	0.482587	
mm_141639.1	chr17	33139544	33139744	-	1	NA	NA	NA	39	NM_177719	240069	Mm.157765	NM_177719	ENSMUSG00000048602	Morc2b	4932411A10Rik|Tce6	microrchidia 2B	protein-coding	0.065000	0.611940	
mm_96830.1	chr11	70000501	70000701	+	1	NA	NA	NA	-25	NM_007888	13543	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0.085000	0.651741	
mm_26314.1	chr3	142519408	142519608	+	1	NA	NA	NA	-10828	NM_001083312	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.005000	0.407960	
mm_76905.1	chr8	105827586	105827786	-	1	NA	NA	NA	-58	NM_024445	72236	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	0.040000	0.601990	
mm_65066.1	chr7	18910283	18910483	-	1	NA	NA	NA	21	NM_001033314	232933	Mm.333624	NM_001033314	ENSMUSG00000074358	Ccdc61	C530028I08Rik|Gm159	coiled-coil domain containing 61	protein-coding	0.100000	0.626866	
mm_4923.1	chr1	190928759	190928959	+	1	NA	NA	NA	354	NR_037579	52477	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	0.145000	0.810945	
mm_15450.1	chr2	157402988	157403188	+	1	NA	NA	NA	-21205	NM_009271	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.010000	0.472637	
mm_122417.1	chr14	41134305	41134505	-	1	NA	NA	NA	2617	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.010000	0.447761	
mm_59996.1	chr7	30563744	30563944	+	1	NA	NA	NA	504	NM_170760	233073	Mm.34790	NM_170760	ENSMUSG00000078765	U2af1l4	AA407033|AF419339|AI451269|AW553050|U2af26	U2 small nuclear RNA auxiliary factor 1-like 4	protein-coding	0.025000	0.547264	
mm_54081.1	chr6	15728082	15728282	-	1	NA	NA	NA	7521	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.010000	0.482587	-55(AGCTCTATAAAG,-,0.00)
mm_140694.1	chr17	13761321	13761521	-	1	NA	NA	NA	-27	NM_022311	21646	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0.170000	0.751244	
mm_104361.1	chr11	94309591	94309791	-	1	NA	NA	NA	12220	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.015000	0.278607	-68(CTTTTAATAGAA,+,0.00),-40(GTTTTTAAAGTT,+,0.00)
mm_56807.1	chr6	116657460	116657660	-	1	NA	NA	NA	6876	NM_001166580	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.010000	0.542289	
mm_168823.1	chr12	22466857	22467057	-	1	NA	NA	NA	-310311	NR_136920	100043416		NM_001004167	ENSMUSG00000093846	Gm4425	EG432637|Gm5433	KRAB-domain protein pseudogene	pseudo	0.105000	0.726368	
mm_65746.1	chr7	28544134	28544334	-	1	NA	NA	NA	3020	NM_001081115	233038	Mm.224815	NM_001081115	ENSMUSG00000047586	Nccrp1	1190020J12Rik|Gm163|NCCRP-1	non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)	protein-coding	0.050000	0.616915	
mm_150159.1	chr19	32263014	32263214	+	1	NA	NA	NA	-52101	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.000000	0.363184	
mm_156604.1	chrX	153139929	153140129	+	1	NA	NA	NA	71	NM_001004154	245670	Mm.190922	NM_001004154	ENSMUSG00000041658	Rragb	-	Ras-related GTP binding B	protein-coding	0.080000	0.641791	
mm_90433.1	chr10	127621211	127621411	+	1	NA	NA	NA	-163	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.060000	0.651741	
mm_100162.1	chr11	116433997	116434197	+	1	NA	NA	NA	3	NM_176902	319370	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	0.140000	0.746269	
mm_154641.1	chrX	7764307	7764507	+	1	NA	NA	NA	366	NM_001271491	209446	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	0.035000	0.487562	
mm_51169.1	chr6	70726493	70726693	+	1	NA	NA	NA	65582	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.030000	0.487562	
mm_33149.1	chr4	125176456	125176656	+	1	NA	NA	NA	-48675	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.005000	0.442786	-3(CCTTAAAGACAG,+,0.00)
mm_136257.1	chr16	91010914	91011114	-	1	NA	NA	NA	81	NM_001045515	104015	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.125000	0.791045	
mm_156429.1	chrX	140979807	140980007	+	1	NA	NA	NA	-23196	NM_001164177	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	0.000000	0.363184	
mm_52342.1	chr6	110760946	110761146	+	1	NA	NA	NA	115448	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.005000	0.412935	77(GGCTCTTTATGG,-,0.00),79(CTCTTTATGGCC,+,0.00)
mm_48691.1	chr5	146794677	146794877	-	1	NA	NA	NA	179	NM_011669	22217	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.180000	0.845771	
mm_140177.1	chr17	80896727	80896927	+	1	NA	NA	NA	34	NR_131127	320784	Mm.474182	NR_131127		C230072F16Rik	-	RIKEN cDNA C230072F16 gene	ncRNA	0.010000	0.437811	38(GGGTCTTAAAAG,-,0.00),39(GGTCTTAAAAGA,-,0.00)
mm_168791.1	chr12	19288486	19288686	+	1	NA	NA	NA	774076	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.125000	0.741294	
mm_159918.1	chr6	50596304	50596504	-	1	NA	NA	NA	186	NM_027564	70821	Mm.157323	NM_027564	ENSMUSG00000029828	4921507P07Rik	TISP74	RIKEN cDNA 4921507P07 gene	protein-coding	0.070000	0.636816	
mm_140818.1	chr17	23193092	23193292	-	1	NA	NA	NA	36	NM_009555	22700	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	0.050000	0.582090	
mm_142943.1	chr17	56074457	56074657	-	1	NA	NA	NA	432	NM_024432	66530	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0.060000	0.626866	
mm_146249.1	chr18	77778495	77778695	+	1	NA	NA	NA	4827	NM_007505	11946	Mm.276137	NM_007505	ENSMUSG00000025428	Atp5a1	AI035633|AL022851|AL023067|Atpm|D18Ertd206e|Mom2	ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	protein-coding	0.060000	0.537313	
mm_170406.1	chr1	86526844	86527044	+	1	NA	NA	NA	208	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.120000	0.671642	
mm_162338.1	chr1	46427050	46427250	+	1	NA	NA	NA	1632	NM_001310335	100101919	Mm.383402	NM_001310335	ENSMUSG00000101337	Dnah7c	Dnahc7c	dynein, axonemal, heavy chain 7C	protein-coding	0.005000	0.313433	
mm_145014.1	chr18	38632353	38632553	+	1	NA	NA	NA	-31185	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.020000	0.487562	
mm_119789.1	chr14	54192617	54192817	+	1	NA	NA	NA	61212	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.477612	
mm_91043.1	chr10	18545923	18546123	-	1	NA	NA	NA	53	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	0.035000	0.616915	
mm_132450.1	chr16	36034848	36035048	+	1	NA	NA	NA	-6242	NM_027113	69544	Mm.37802	NM_027113	ENSMUSG00000034379	Wdr5b	2310009C03Rik|AI606931	WD repeat domain 5B	protein-coding	0.010000	0.412935	69(ATCTTTAAAAGC,-,0.00),70(TCTTTAAAAGCA,+,0.00)
mm_167917.1	chrX	100740992	100741192	+	1	NA	NA	NA	10906	NM_001305941	71584	Mm.283495	NM_023608	ENSMUSG00000019359	Gdpd2	9130017L10Rik|Gde3|Obdpf	glycerophosphodiester phosphodiesterase domain containing 2	protein-coding	0.015000	0.532338	-33(GGCTATTAATAG,-,0.00)
mm_141575.1	chr17	32321061	32321261	-	1	NA	NA	NA	77	NM_019774	56399	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	0.085000	0.587065	
mm_73772.1	chr8	116504867	116505067	+	1	NA	NA	NA	-48	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.045000	0.557214	
mm_48310.1	chr5	138619655	138619855	-	1	NA	NA	NA	-12	NM_001044747	24135	Mm.27575	NM_013844	ENSMUSG00000058291	Zfp68	KRAB3|KRAZ2|Zfp70|mszf22|mszf49	zinc finger protein 68	protein-coding	0.050000	0.631841	
mm_123961.1	chr14	74933422	74933622	-	1	NA	NA	NA	14355	NM_001252132	380916	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.000000	0.447761	
mm_86402.1	chr9	123986535	123986735	-	1	NA	NA	NA	-8227	NM_007718	12770	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0.010000	0.437811	
mm_83423.1	chr9	44974145	44974345	-	1	NA	NA	NA	6186	NM_009850	12502	Mm.335106	NM_009850	ENSMUSG00000002033	Cd3g	Ctg-3|Ctg3|T3g	CD3 antigen, gamma polypeptide	protein-coding	0.015000	0.437811	-60(GCTTAAAGACGG,+,0.00),-36(TCCTCTAAATGC,-,0.00)
mm_58000.1	chr6	136173408	136173608	-	1	NA	NA	NA	3	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.050000	0.626866	
mm_65084.1	chr7	19257519	19257719	-	1	NA	NA	NA	14235	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.020000	0.557214	
mm_42688.1	chr5	119835017	119835217	+	1	NA	NA	NA	454	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.020000	0.577114	
mm_94809.1	chr11	23020251	23020451	+	1	NA	NA	NA	6964	NM_028672	73873	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0.040000	0.497512	
mm_67227.1	chr7	74554659	74554859	-	1	NA	NA	NA	21	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.115000	0.741294	
mm_47676.1	chr5	128600590	128600790	-	1	NA	NA	NA	-3	NR_015517	319616	Mm.387738	NR_015517	ENSMUSG00000072591	5930412G12Rik	-	RIKEN cDNA 5930412G12 gene	ncRNA	0.060000	0.716418	
mm_91157.1	chr10	20548227	20548427	-	1	NA	NA	NA	1	NM_001347366	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.040000	0.587065	
mm_107818.1	chr12	66952130	66952330	+	1	NA	NA	NA	270319	NM_001193266	320772	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	0.005000	0.412935	
mm_15518.1	chr2	158320204	158320404	+	1	NA	NA	NA	13811	NM_008489	16803	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	0.020000	0.482587	
mm_145233.1	chr18	50134739	50134939	+	1	NA	NA	NA	6638	NM_008292	15488	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.040000	0.552239	
mm_79649.1	chr9	59585690	59585890	+	1	NA	NA	NA	-3524	NM_001311092	76183	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0.030000	0.522388	
mm_144417.1	chr18	20962712	20962912	+	1	NA	NA	NA	18187	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.060000	0.462687	
mm_5992.1	chr1	58586179	58586379	-	1	NA	NA	NA	54	NM_001310598	213056	Mm.26272	NM_172513	ENSMUSG00000038174	Fam126b	C130065N10Rik|D1Ertd53e|D630010C10	family with sequence similarity 126, member B	protein-coding	0.075000	0.646766	
mm_157008.1	chrX	7595346	7595546	-	1	NA	NA	NA	9974	NM_138603	54638	Mm.288192	NM_138603	ENSMUSG00000031143	Ccdc22	AI481216|DXImx40e|Ppp1r3f|Sfc22	coiled-coil domain containing 22	protein-coding	0.030000	0.582090	-56(AGGTCTATAAGC,-,0.00)
mm_123123.1	chr14	56159494	56159694	-	1	NA	NA	NA	-15	NM_010375	14944	Mm.14868	NM_010375	ENSMUSG00000040284	Gzmg	Ctla-7|Ctla7	granzyme G	protein-coding	0.010000	0.497512	
mm_86888.1	chr10	22282964	22283164	+	1	NA	NA	NA	9590	NM_001177775	667281	Mm.484254	NM_001177775	ENSMUSG00000075297	H60b	EG667281	histocompatibility 60b	protein-coding	0.020000	0.512438	
mm_46011.1	chr5	90789713	90789913	-	1	NA	NA	NA	3712	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.015000	0.487562	
mm_126681.1	chr15	84719999	84720199	+	1	NA	NA	NA	47	NM_001205334	73167	Mm.128411	NM_028455	ENSMUSG00000078954	Arhgap8	3110043J09Rik	Rho GTPase activating protein 8	protein-coding	0.065000	0.716418	
mm_107684.1	chr12	54862883	54863083	+	1	NA	NA	NA	-106	NM_007688	12632	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	0.140000	0.756219	
mm_55643.1	chr6	72347617	72347817	-	1	NA	NA	NA	400	NM_026696	68364	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	0.110000	0.746269	
mm_105045.1	chr11	100613296	100613496	-	1	NA	NA	NA	6772	NM_019795	56354	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0.015000	0.462687	
mm_21231.1	chr2	156016656	156016856	-	1	NA	NA	NA	8631	NM_025516	66366	Mm.141276	NM_025516	ENSMUSG00000005881	Ergic3	2310015B14Rik|AV318804|CGI-54|D2Ucla1|NY-BR-84|Sdbcag84	ERGIC and golgi 3	protein-coding	0.030000	0.562189	
mm_32627.1	chr4	114909197	114909397	+	1	NA	NA	NA	8	NR_030721	100040736	Mm.231287	NR_030721	ENSMUSG00000085399	Foxd2os	9130206I24Rik	forkhead box D2, opposite strand	ncRNA	0.075000	0.721393	
mm_170648.1	chr2	100546997	100547197	-	1	NA	NA	NA	-1077651	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.070000	0.661692	
mm_154410.1	chrM	14650	14850	+	1	NA	NA	NA	NA	NA									0.030000	0.417910	
mm_34895.1	chr4	155624872	155625072	+	1	NA	NA	NA	103	NM_007661	12537	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	0.130000	0.736318	
mm_147590.1	chr18	56562418	56562618	-	1	NA	NA	NA	-51	NM_001162989	56698	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	0.070000	0.676617	
mm_171736.1	chr4	94912517	94912717	+	1	NA	NA	NA	16226	NM_027089	67753	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	0.035000	0.527363	
mm_83088.1	chr9	40320778	40320978	-	1	NA	NA	NA	-12594	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.020000	0.517413	
mm_60043.1	chr7	31059331	31059531	+	1	NA	NA	NA	-504	NM_144556	243914	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	0.005000	0.621891	
mm_158171.1	chrX	103706228	103706428	-	1	NA	NA	NA	75742	NM_029158	75064	Mm.159414	NM_029158	ENSMUSG00000031330	Zcchc13	4930513O09Rik|Cnbp2	zinc finger, CCHC domain containing 13	protein-coding	0.025000	0.517413	
mm_26123.1	chr3	137865819	137866019	+	1	NA	NA	NA	1432	NM_016750	51788	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0.010000	0.328358	84(CCTTTTAGGTAC,+,0.00)
mm_124655.1	chr15	5237419	5237619	+	1	NA	NA	NA	6668	NM_001136079	19219	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.025000	0.507463	
mm_134444.1	chr16	18249142	18249342	-	1	NA	NA	NA	359	NM_001081000	15547	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	0.075000	0.621891	
mm_16826.1	chr2	11475728	11475928	-	1	NA	NA	NA	26262	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.005000	0.417910	
mm_69753.1	chr7	140956179	140956379	-	1	NA	NA	NA	-318	NM_030694	80876	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.000000	0.537313	
mm_80822.1	chr9	96765476	96765676	+	1	NA	NA	NA	14	NR_102296	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	0.015000	0.552239	
mm_80719.1	chr9	92275783	92275983	+	1	NA	NA	NA	281	NM_001195084	18828	Mm.10306	NM_008880	ENSMUSG00000032372	Plscr2	-	phospholipid scramblase 2	protein-coding	0.010000	0.462687	
mm_116526.1	chr13	45805908	45806108	-	1	NA	NA	NA	158983	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.015000	0.343284	
mm_65017.1	chr7	17098417	17098617	-	1	NA	NA	NA	24477	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.000000	0.422886	
mm_53797.1	chr6	146756939	146757139	+	1	NA	NA	NA	32109	NM_172734	232533	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	0.015000	0.492537	
mm_33547.1	chr4	130934636	130934836	+	1	NA	NA	NA	-9649	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.030000	0.572139	
mm_101074.1	chr11	11657144	11657344	-	1	NA	NA	NA	-28681	NM_009578	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.005000	0.517413	
mm_53399.1	chr6	129591661	129591861	+	1	NA	NA	NA	-50	NM_010654	16643	Mm.391515	NM_010654	ENSMUSG00000030165	Klrd1	CD94	killer cell lectin-like receptor, subfamily D, member 1	protein-coding	0.015000	0.482587	-42(CTCTTTTAATGC,-,0.00),17(TTCTTTAAAAAG,-,0.00),19(CTTTAAAAAGCA,+,0.00)
mm_120050.1	chr14	56647597	56647797	+	1	NA	NA	NA	-20551	NM_023773	75339	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	0.000000	0.606965	
mm_97601.1	chr11	78949513	78949713	+	1	NA	NA	NA	24322	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.527363	
mm_13538.1	chr2	110721382	110721582	+	1	NA	NA	NA	-12	NM_001290786	269328	Mm.32566	NM_172979	ENSMUSG00000050808	Muc15	4732460E09|D730046L02Rik|MUC-15	mucin 15	protein-coding	0.005000	0.477612	
mm_87358.1	chr10	43719533	43719733	+	1	NA	NA	NA	-26525	NR_040581	69443	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0.005000	0.363184	
mm_101396.1	chr11	26578387	26578587	-	1	NA	NA	NA	15433	NM_027260	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.010000	0.343284	
mm_98575.1	chr11	95712586	95712786	+	1	NA	NA	NA	68	NR_045780	432396	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	0.110000	0.711443	
mm_36124.1	chr4	58915379	58915579	-	1	NA	NA	NA	-2754	NM_172381	230249	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|mKIAA0368	expressed sequence AI314180	protein-coding	0.005000	0.457711	-34(GGCTTTATAAGC,-,0.00)
mm_129051.1	chr15	75566170	75566370	-	1	NA	NA	NA	378	NM_001135689	23934	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	0.050000	0.656716	-49(GGCCAGAAAAGG,-,0.00)
mm_62251.1	chr7	99267459	99267659	+	1	NA	NA	NA	112	NM_001048167	17760	Mm.154087	NM_010837	ENSMUSG00000055407	Map6	2810411E12Rik|Map-6|Mtap6|STOP	microtubule-associated protein 6	protein-coding	0.070000	0.616915	
mm_99798.1	chr11	107546854	107547054	+	1	NA	NA	NA	-1006	NM_198298	78455	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	0.090000	0.661692	
mm_121914.1	chr14	22542709	22542909	-	1	NA	NA	NA	-11	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.020000	0.507463	
mm_15406.1	chr2	156745733	156745933	+	1	NA	NA	NA	24554	NM_001042487	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.030000	0.547264	
mm_53869.1	chr6	149334127	149334327	+	1	NA	NA	NA	24813	NM_001289662	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.005000	0.373134	42(CCTTTTAGATAG,+,0.00)
mm_50407.1	chr6	48737236	48737436	+	1	NA	NA	NA	-1711	NM_175860	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.010000	0.402985	
mm_10844.1	chr2	24975241	24975441	+	1	NA	NA	NA	-243	NM_001031808	107733	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	0.090000	0.636816	
mm_52074.1	chr6	97827159	97827359	+	1	NA	NA	NA	20201	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.010000	0.467662	3(CCTCATTAAAGG,-,0.00)
mm_10572.1	chr2	18064504	18064704	+	1	NA	NA	NA	19	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.130000	0.776119	
mm_133394.1	chr16	84774227	84774427	+	1	NA	NA	NA	204	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.050000	0.646766	
mm_160295.1	chr7	131543042	131543242	+	1	NA	NA	NA	179	NM_008257	15373	Mm.323562	NM_008257	ENSMUSG00000040148	Hmx3	Nkx-5.1|Nkx5-1|Nkx5.1	H6 homeobox 3	protein-coding	0.125000	0.726368	
mm_42882.1	chr5	122354320	122354520	+	1	NA	NA	NA	7	NM_019780	56433	Mm.216528	NM_019780	ENSMUSG00000029462	Vps29	2010015D08Rik|AW049835|PEP11	VPS29 retromer complex component	protein-coding	0.090000	0.656716	
mm_9083.1	chr1	168431801	168432001	-	1	NA	NA	NA	268	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.035000	0.537313	
mm_57723.1	chr6	128890897	128891097	-	1	NA	NA	NA	127	NM_001254946	232406	Mm.30745	NM_001254946	ENSMUSG00000090164	BC035044	-	cDNA sequence BC035044	protein-coding	0.005000	0.452736	
mm_102659.1	chr11	63975200	63975400	-	1	NA	NA	NA	11074	NR_131111	78883	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	0.020000	0.412935	-33(CTTTATAAAAGC,+,0.00),-33(CTTTATAAAAGC,-,0.00)
mm_145201.1	chr18	49979429	49979629	+	1	NA	NA	NA	102	NM_001177759	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.105000	0.731343	
mm_2130.1	chr1	88055373	88055573	+	1	NA	NA	NA	62	NM_201641	394430	Mm.300095	NM_201641	ENSMUSG00000090165	Ugt1a10	A13|Ugt1a13	UDP glycosyltransferase 1 family, polypeptide A10	protein-coding	0.005000	0.497512	
mm_7579.1	chr1	125197370	125197570	-	1	NA	NA	NA	238257	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.005000	0.452736	
mm_98910.1	chr11	98202644	98202844	+	1	NA	NA	NA	-561	NM_001109628	69131	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.080000	0.587065	
mm_83876.1	chr9	55149893	55150093	-	1	NA	NA	NA	-90	NM_001346658	109161	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0.135000	0.805970	
mm_136871.1	chr17	12916405	12916605	+	1	NA	NA	NA	176	NM_013686	21454	Mm.229342	NM_013686	ENSMUSG00000068039	Tcp1	AI528772|CCT|Cct1|Ccta|TRic|Tcp-1|Tp63|c-cpn|p63	t-complex protein 1	protein-coding	0.110000	0.651741	
mm_100154.1	chr11	116189337	116189537	+	1	NA	NA	NA	-9418	NM_027107	69535	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	0.025000	0.502488	
mm_122377.1	chr14	39473964	39474164	-	1	NA	NA	NA	-976	NM_008734	18183	Mm.258705	NM_008734	ENSMUSG00000041014	Nrg3	ska	neuregulin 3	protein-coding	0.065000	0.641791	
mm_418.1	chr1	34307676	34307876	+	1	NA	NA	NA	125423	NR_039562	100628580		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0.005000	0.353234	
mm_169498.1	chr14	76494936	76495136	-	1	NA	NA	NA	6600	NM_001177751	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.015000	0.552239	
mm_43146.1	chr5	125465917	125466117	+	1	NA	NA	NA	-9856	NM_030210	78894	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0.040000	0.572139	
mm_128920.1	chr15	73760983	73761183	-	1	NA	NA	NA	13057	NM_008975	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.040000	0.641791	
mm_123719.1	chr14	70152347	70152547	-	1	NA	NA	NA	1344	NM_146055	219158	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	0.015000	0.522388	-99(GGGTTTATAAGA,-,0.00)
mm_136842.1	chr17	12759095	12759295	+	1	NA	NA	NA	10511	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.025000	0.517413	
mm_43217.1	chr5	129726949	129727149	+	1	NA	NA	NA	1974	NM_008095	14467	Mm.12468	NM_008095	ENSMUSG00000029432	Gbas	AV006093|Nipsnap2	glioblastoma amplified sequence	protein-coding	0.005000	0.492537	
mm_26552.1	chr3	146404761	146404961	+	1	NA	NA	NA	219	NM_138744	99167	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	0.135000	0.756219	
mm_166097.1	chr4	142996098	142996298	+	1	NA	NA	NA	139964	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	0.005000	0.522388	
mm_63585.1	chr7	128129455	128129655	+	1	NA	NA	NA	-13	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.005000	0.517413	
mm_50073.1	chr6	41302172	41302372	+	1	NA	NA	NA	0	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.000000	0.507463	-34(GGGTATAAAGGC,-,0.00)
mm_21139.1	chr2	154215203	154215403	-	1	NA	NA	NA	-8439	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.010000	0.502488	86(GCATCTAAAGGG,-,0.00)
mm_6232.1	chr1	66944864	66945064	-	1	NA	NA	NA	92	NM_021285	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.030000	0.492537	
mm_120776.1	chr14	74640779	74640979	+	1	NA	NA	NA	39	NM_172812	15558	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	0.020000	0.542289	
mm_99096.1	chr11	99931925	99932125	+	1	NA	NA	NA	-4266	NM_001025244	432602	Mm.246878	NM_001025244	ENSMUSG00000051481	Krtap31-2	OTTMUSG00000002177	keratin associated protein 31-2	protein-coding	0.050000	0.472637	-45(ACCTTTTAAAAG,-,0.00),-44(CCTTTTAAAAGC,+,0.00),-44(CCTTTTAAAAGC,-,0.00),-43(CTTTTAAAAGCA,+,0.00)
mm_150975.1	chr19	46501624	46501824	+	1	NA	NA	NA	76	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.060000	0.597015	
mm_150401.1	chr19	36554658	36554858	+	1	NA	NA	NA	119	NM_172637	226098	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain containing 2	protein-coding	0.170000	0.805970	
mm_28577.1	chr3	93445401	93445601	-	1	NA	NA	NA	3171	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.050000	0.542289	
mm_143871.1	chr17	84186881	84187081	-	1	NA	NA	NA	966	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.100000	0.736318	
mm_135432.1	chr16	45382767	45382967	-	1	NA	NA	NA	26186	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.010000	0.462687	
mm_2777.1	chr1	130802987	130803187	+	1	NA	NA	NA	2185	NM_144960	64435	Mm.31821	NM_144960	ENSMUSG00000026415	Fcamr	-	Fc receptor, IgA, IgM, high affinity	protein-coding	0.020000	0.532338	-95(TCTTTTAAACAC,+,0.00)
mm_105227.1	chr11	102296682	102296882	-	1	NA	NA	NA	-153	NM_001098837	217218	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0.175000	0.800995	
mm_57830.1	chr6	129464408	129464608	-	1	NA	NA	NA	8271	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.005000	0.363184	
mm_22005.1	chr2	167770360	167770560	-	1	NA	NA	NA	79283	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.010000	0.577114	-39(GGCCATTTAAGC,-,0.00),-37(CCATTTAAGCTG,+,0.00)
mm_125957.1	chr15	76249453	76249653	+	1	NA	NA	NA	1362	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.015000	0.587065	
mm_86802.1	chr10	20312432	20312632	+	1	NA	NA	NA	63	NM_001025393	72567	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0.105000	0.621891	
mm_106438.1	chr11	119547652	119547852	-	1	NA	NA	NA	68	NM_008730	18164	Mm.5142	NM_008730	ENSMUSG00000025582	Nptx1	D11Bwg1004e|Np1	neuronal pentraxin 1	protein-coding	0.145000	0.726368	-34(CTGCATAAAAGG,-,0.00)
mm_42773.1	chr5	121353866	121354066	+	1	NA	NA	NA	31649	NM_001163470	231712	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.025000	0.611940	
mm_10867.1	chr2	25194713	25194913	+	1	NA	NA	NA	2000	NM_146115	227612	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0.020000	0.582090	
mm_11717.1	chr2	36241832	36242032	+	1	NA	NA	NA	11506	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.010000	0.462687	
mm_61817.1	chr7	87583853	87584053	+	1	NA	NA	NA	-215	NM_001081414	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0.000000	0.462687	
mm_155457.1	chrX	73502763	73502963	+	1	NA	NA	NA	-223	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.020000	0.636816	
mm_114305.1	chr13	59625052	59625252	+	1	NA	NA	NA	39819	NM_030153	78689	Mm.253902	NM_030153	ENSMUSG00000021555	Naa35	A330021G12Rik|A330027C19Rik|AI158944|C030004C14Rik|Mak10	N(alpha)-acetyltransferase 35, NatC auxiliary subunit	protein-coding	0.015000	0.452736	
mm_28146.1	chr3	87377714	87377914	-	1	NA	NA	NA	1427	NM_001136236	229499	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	0.015000	0.457711	-46(GGGGATAAAAGG,-,0.00)
mm_87217.1	chr10	40257622	40257822	+	1	NA	NA	NA	-57	NM_026113	67371	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	0.095000	0.616915	
mm_115401.1	chr13	113881104	113881304	+	1	NA	NA	NA	86696	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.030000	0.542289	
mm_23200.1	chr3	41495193	41495393	+	1	NA	NA	NA	-2094	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.020000	0.547264	-32(GCTTTAATACCC,+,0.00)
mm_115646.1	chr13	12278843	12279043	-	1	NA	NA	NA	-20830	NM_001081128	238505	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.030000	0.557214	
mm_70053.1	chr7	142650986	142651186	-	1	NA	NA	NA	3910	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.005000	0.562189	
mm_171160.1	chr3	22732157	22732357	-	1	NA	NA	NA	480887	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0.020000	0.507463	
mm_120796.1	chr14	74735552	74735752	+	1	NA	NA	NA	3355	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.025000	0.432836	
mm_166353.1	chr5	120629666	120629866	-	1	NA	NA	NA	4469	NM_001195094	546886	Mm.464847	NM_001195094	ENSMUSG00000094282	Cfap73	Ccdc42b|Gm5988	cilia and flagella associated protein 73	protein-coding	0.055000	0.562189	
mm_167314.1	chr8	66330749	66330949	-	1	NA	NA	NA	-55452	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.005000	0.422886	
mm_55259.1	chr6	53563828	53564028	-	1	NA	NA	NA	-9446	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.015000	0.517413	
mm_36922.1	chr4	108144868	108145068	-	1	NA	NA	NA	-20469	NM_026728	52430	Mm.270783	NM_026728	ENSMUSG00000028601	Echdc2	1300017C12Rik|2610009M20Rik|D4Ertd765e	enoyl Coenzyme A hydratase domain containing 2	protein-coding	0.005000	0.432836	
mm_117610.1	chr13	91262650	91262850	-	1	NA	NA	NA	-38763	NM_025770	66795	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.040000	0.477612	
mm_161967.1	chr19	8999561	8999761	+	1	NA	NA	NA	10377	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.020000	0.492537	
mm_158524.1	chrX	143860854	143861054	-	1	NA	NA	NA	-33542	NM_007603	12338	Mm.30290	NM_007603	ENSMUSG00000067276	Capn6	-	calpain 6	protein-coding	0.010000	0.388060	
mm_114070.1	chr13	54382476	54382676	+	1	NA	NA	NA	11227	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.010000	0.527363	
mm_73183.1	chr8	95113346	95113546	+	1	NA	NA	NA	-104	NM_001145832	16582	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.010000	0.567164	
mm_96957.1	chr11	70615794	70615994	+	1	NA	NA	NA	0	NM_001145537	668433	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.020000	0.532338	
mm_105732.1	chr11	109246821	109247021	-	1	NA	NA	NA	51260	NM_001165934	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0.010000	0.487562	
mm_125214.1	chr15	34082670	34082870	+	1	NA	NA	NA	51	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.145000	0.751244	
mm_71480.1	chr8	46617336	46617536	+	1	NA	NA	NA	145	NM_009810	12367	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0.070000	0.656716	
mm_99416.1	chr11	102295372	102295572	+	1	NA	NA	NA	1157	NM_001098836	217218	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0.005000	0.547264	
mm_72013.1	chr8	70703942	70704142	+	1	NA	NA	NA	6303	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.005000	0.517413	
mm_58724.1	chr7	13024595	13024795	+	1	NA	NA	NA	543	NM_011588	21849	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	0.150000	0.805970	
mm_13407.1	chr2	104027746	104027946	+	1	NA	NA	NA	47	NM_212433	57443	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	0.095000	0.706468	
mm_127368.1	chr15	100749801	100750001	+	1	NA	NA	NA	-11846	NM_021530	59033	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0.010000	0.502488	
mm_1023.1	chr1	58753998	58754198	+	1	NA	NA	NA	23546	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.035000	0.522388	
mm_117834.1	chr13	98550674	98550874	-	1	NA	NA	NA	86636	NM_026685	68344	Mm.28766	NM_026685	ENSMUSG00000046082	Tmem174	0610009B10Rik|AA986094	transmembrane protein 174	protein-coding	0.040000	0.547264	
mm_122031.1	chr14	29721761	29721961	-	1	NA	NA	NA	3	NM_009785	12294	Mm.386754	NM_009785	ENSMUSG00000021991	Cacna2d3	Cacnad3|alapha2delta3	calcium channel, voltage-dependent, alpha2/delta subunit 3	protein-coding	0.150000	0.825871	
mm_109786.1	chr12	3248220	3248420	-	1	NA	NA	NA	12529	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.010000	0.452736	
mm_80914.1	chr9	100649127	100649327	+	1	NA	NA	NA	5604	NM_009282	20842	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	0.000000	0.308458	-51(CCTTTTATAAAG,+,0.00),-49(TTTTATAAAGCC,+,0.00)
mm_65293.1	chr7	24457731	24457931	-	1	NA	NA	NA	-4652	NM_011113	18793	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.020000	0.502488	
mm_120684.1	chr14	70773153	70773353	+	1	NA	NA	NA	-1128	NM_010071	13449	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip	docking protein 2	protein-coding	0.010000	0.477612	
mm_130199.1	chr15	94589718	94589918	-	1	NA	NA	NA	6	NM_008971	19230	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0.115000	0.761194	
mm_9502.1	chr1	173730336	173730536	-	1	NA	NA	NA	11373	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.005000	0.412935	
mm_118859.1	chr14	25842058	25842258	+	1	NA	NA	NA	3	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.110000	0.686567	
mm_54758.1	chr6	41035408	41035608	-	1	NA	NA	NA	1	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.437811	
mm_44196.1	chr5	3640646	3640846	-	1	NA	NA	NA	7190	NM_026033	67210	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|ENSMUSG00000073241|Odag	GATA zinc finger domain containing 1	protein-coding	0.000000	0.373134	
mm_55007.1	chr6	48836236	48836436	-	1	NA	NA	NA	4652	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.015000	0.552239	
mm_20395.1	chr2	129180567	129180767	-	1	NA	NA	NA	6	NR_045264	100048701	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	OTTMUSG00000015420	expressed sequence AI847159	ncRNA	0.010000	0.452736	
mm_100034.1	chr11	114982521	114982721	+	1	NA	NA	NA	7265	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.005000	0.482587	
mm_37407.1	chr4	122688861	122689061	-	1	NA	NA	NA	-298	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	0.000000	0.477612	
mm_104723.1	chr11	98193183	98193383	-	1	NA	NA	NA	10	NM_134027	19014	Mm.12926	NM_013634	ENSMUSG00000018160	Med1	AI480703|CRSP210|DRIP205|PBP|Pparbp|TRAP220|l11Jus15	mediator complex subunit 1	protein-coding	0.095000	0.611940	
mm_128042.1	chr15	25390368	25390568	-	1	NA	NA	NA	23296	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.000000	0.442786	
mm_152817.1	chr19	23134848	23135048	-	1	NA	NA	NA	-6278	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.100000	0.701493	
mm_149339.1	chr19	10850265	10850465	+	1	NA	NA	NA	7821	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.005000	0.462687	
mm_100849.1	chr11	5803464	5803664	-	1	NA	NA	NA	232	NM_018870	56012	Mm.219627	NM_018870	ENSMUSG00000020475	Pgam2	-	phosphoglycerate mutase 2	protein-coding	0.050000	0.557214	
mm_113638.1	chr13	42052242	42052442	+	1	NA	NA	NA	321	NM_007772	110521	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.150000	0.796020	
mm_101401.1	chr11	26593795	26593995	-	1	NA	NA	NA	25	NM_027260	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.015000	0.532338	
mm_133286.1	chr16	77465948	77466148	+	1	NA	NA	NA	-132888	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.005000	0.373134	
mm_78175.1	chr9	21167854	21168054	+	1	NA	NA	NA	2240	NM_183408	18577	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.015000	0.557214	-31(TCCCTTTTAAGG,-,0.00),-30(CCCTTTTAAGGC,-,0.00),-29(CCTTTTAAGGCC,+,0.00),-28(CTTTTAAGGCCC,+,0.00)
mm_138641.1	chr17	35866151	35866351	+	1	NA	NA	NA	123	NM_001146710	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.025000	0.567164	
mm_47637.1	chr5	125312148	125312348	-	1	NA	NA	NA	28846	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.010000	0.497512	
mm_158952.1	chr1	87154794	87154994	-	1	NA	NA	NA	1242	NM_001277925	13599	Mm.140765	NM_021306	ENSMUSG00000026247	Ecel1	DINE|xce	endothelin converting enzyme-like 1	protein-coding	0.080000	0.661692	
mm_62456.1	chr7	101451283	101451483	+	1	NA	NA	NA	131	NM_001243757	207728	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.095000	0.706468	
mm_136933.1	chr17	14169598	14169798	+	1	NA	NA	NA	34133	NM_172826	240025	Mm.79993	NM_172826	ENSMUSG00000048826	Dact2	2900084M21Rik|A630024E20|Dpr2|Frd2|dapper2	dishevelled-binding antagonist of beta-catenin 2	protein-coding	0.020000	0.547264	
mm_125740.1	chr15	73518491	73518691	+	1	NA	NA	NA	6031	NM_001081066	105841	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.005000	0.497512	
mm_141433.1	chr17	29492259	29492459	-	1	NA	NA	NA	1314	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.025000	0.437811	
mm_85068.1	chr9	91102079	91102279	-	1	NA	NA	NA	263620	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.000000	0.398010	40(GAGTTTAAAAAG,-,0.00)
mm_63974.1	chr7	139950607	139950807	+	1	NA	NA	NA	6851	NM_009482	22286	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	0.050000	0.587065	
mm_123485.1	chr14	66009081	66009281	-	1	NA	NA	NA	29	NM_178747	268756	Mm.26207	NM_178747	ENSMUSG00000034450	Gulo	5730581M22|AU018375|BC028822|GLO|LGO|sfx|unh|unhip	gulonolactone (L-) oxidase	protein-coding	0.025000	0.572139	
mm_126405.1	chr15	80255076	80255276	+	1	NA	NA	NA	-8	NM_001287180	11911	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	0.120000	0.621891	
mm_80194.1	chr9	72396209	72396409	+	1	NA	NA	NA	-42220	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.005000	0.482587	
mm_56270.1	chr6	91023899	91024099	-	1	NA	NA	NA	92827	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.005000	0.467662	
mm_138756.1	chr17	37050079	37050279	+	1	NA	NA	NA	4213	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.055000	0.592040	
mm_113480.1	chr13	37333665	37333865	+	1	NA	NA	NA	-11580	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.005000	0.467662	
mm_25626.1	chr3	118818071	118818271	+	1	NA	NA	NA	255993	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.000000	0.388060	
mm_149471.1	chr19	11618850	11619050	+	1	NA	NA	NA	4769	NM_001276330	14126	Mm.329735	NM_013516	ENSMUSG00000024680	Ms4a2	FcRB|Fce1b|Fcer1b|Fcrbeta|Ms4a1|fcERI	membrane-spanning 4-domains, subfamily A, member 2	protein-coding	0.035000	0.512438	-42(GTTCATATAAGC,-,0.00)
mm_70937.1	chr8	25849577	25849777	+	1	NA	NA	NA	54	NM_008432	16532	Mm.289679	NM_008432	ENSMUSG00000031576	Kcnu1	Kcnma3|Slo3|mSlo3	potassium channel, subfamily U, member 1	protein-coding	0.035000	0.467662	
mm_3415.1	chr1	144317823	144318023	+	1	NA	NA	NA	-68819	NM_015811	50778	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.005000	0.407960	
mm_172833.1	chr9	23284277	23284477	-	1	NA	NA	NA	61301	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.030000	0.452736	-57(GCCTTTATAAAA,-,0.00)
mm_36061.1	chr4	57915631	57915831	-	1	NA	NA	NA	533	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.025000	0.577114	
mm_28091.1	chr3	85887268	85887468	-	1	NA	NA	NA	150	NM_177130	320302	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding	0.075000	0.671642	
mm_2241.1	chr1	91053448	91053648	+	1	NA	NA	NA	104	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.070000	0.626866	
mm_36732.1	chr4	99121173	99121373	-	1	NA	NA	NA	-358	NM_026082	67299	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0.025000	0.517413	
mm_2170.1	chr1	88259303	88259503	+	1	NA	NA	NA	10005	NR_040291	78605	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.010000	0.567164	
mm_46714.1	chr5	110448347	110448547	-	1	NA	NA	NA	56	NM_001317042	381668	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.110000	0.701493	
mm_116399.1	chr13	41235000	41235200	-	1	NA	NA	NA	-14697	NM_019423	54326	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0.030000	0.482587	-20(TGCTTTAAAAGA,-,0.00),-19(GCTTTAAAAGAA,+,0.00)
mm_52160.1	chr6	98018972	98019172	+	1	NA	NA	NA	27289	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.263682	
mm_139650.1	chr17	57389034	57389234	+	1	NA	NA	NA	30448	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.412935	
mm_5396.1	chr1	33649063	33649263	-	1	NA	NA	NA	20631	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	0.010000	0.482587	
mm_133556.1	chr16	91387930	91388130	+	1	NA	NA	NA	15247	NM_001110498	15976	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.060000	0.522388	
mm_101179.1	chr11	16995246	16995446	-	1	NA	NA	NA	13372	NM_019549	56193	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.005000	0.388060	
mm_3085.1	chr1	134405895	134406095	+	1	NA	NA	NA	5	NM_028057	72017	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	0.085000	0.701493	
mm_160637.1	chr9	108461590	108461790	-	1	NA	NA	NA	-109	NM_030075	78267	Mm.283194	NM_030075	ENSMUSG00000032609	Klhdc8b	4931406O17Rik	kelch domain containing 8B	protein-coding	0.025000	0.467662	76(GCGCTTAAAAGG,-,0.00),78(GCTTAAAAGGCA,+,0.00)
mm_138139.1	chr17	34198293	34198493	+	1	NA	NA	NA	198	NM_010724	16913	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	0.080000	0.666667	
mm_61368.1	chr7	69909637	69909837	+	1	NA	NA	NA	413643	NR_045940	73796	Mm.410832	NR_045940	ENSMUSG00000108885	4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA	0.005000	0.537313	
mm_48165.1	chr5	137152810	137153010	-	1	NA	NA	NA	-36703	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.477612	
mm_79027.1	chr9	46009165	46009365	+	1	NA	NA	NA	-3555	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.015000	0.502488	
mm_38669.1	chr4	144721335	144721535	-	1	NA	NA	NA	-31	NM_001085536	546849	Mm.457885	NM_001085536	ENSMUSG00000041735	Gm13178	Gm437|OTTMUSG00000010750	predicted gene 13178	protein-coding	0.005000	0.507463	
mm_12863.1	chr2	83805054	83805254	+	1	NA	NA	NA	-7574	NM_175514	241520	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	0.000000	0.313433	
mm_44125.1	chr5	149636433	149636633	+	1	NA	NA	NA	-197	NM_001347534	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.075000	0.582090	
mm_66073.1	chr7	30909113	30909313	-	1	NA	NA	NA	5108	NM_001346089	17136	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	0.035000	0.616915	
mm_87302.1	chr10	42534948	42535148	+	1	NA	NA	NA	32994	NM_017472	54198	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.025000	0.522388	
mm_79145.1	chr9	47699949	47700149	+	1	NA	NA	NA	118159	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.010000	0.338308	
mm_112102.1	chr12	112785334	112785534	-	1	NA	NA	NA	-23541	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.030000	0.527363	
mm_73377.1	chr8	105636449	105636649	+	1	NA	NA	NA	11	NM_181322	13018	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0.155000	0.746269	
mm_99540.1	chr11	103197582	103197782	+	1	NA	NA	NA	10866	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.030000	0.512438	
mm_172772.1	chr8	94434241	94434441	+	1	NA	NA	NA	762	NR_015514	320377	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0.090000	0.616915	
mm_73200.1	chr8	95677677	95677877	+	1	NA	NA	NA	-25260	NM_001195006	234593	Mm.29846	NM_145602	ENSMUSG00000036564	Ndrg4	D8Bwg1337e|Ndr1-rs|Ndr4|R74996|SMAP-8	N-myc downstream regulated gene 4	protein-coding	0.150000	0.800995	
mm_66929.1	chr7	61529979	61530179	-	1	NA	NA	NA	85248	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.000000	0.368159	
mm_3392.1	chr1	141277614	141277814	+	1	NA	NA	NA	-621312	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0.000000	0.407960	-20(GATTTTTAAAGG,-,0.00)
mm_118821.1	chr14	25529804	25530004	+	1	NA	NA	NA	-4535	NR_037236	100526533		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.010000	0.467662	
mm_171201.1	chr3	54481318	54481518	+	1	NA	NA	NA	120311	NM_015784	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0.020000	0.447761	-89(CCCTATTAAAAA,-,0.00)
mm_114534.1	chr13	73627074	73627274	+	1	NA	NA	NA	173	NM_009354	21752	Mm.10109	NM_009354	ENSMUSG00000021611	Tert	EST2|TCS1|TP2|TR|TRT	telomerase reverse transcriptase	protein-coding	0.060000	0.666667	
mm_60555.1	chr7	44481061	44481261	+	1	NA	NA	NA	-3356	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.462687	
mm_160722.1	chr10	69212534	69212734	+	1	NA	NA	NA	-23	NM_001081347	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.060000	0.666667	
mm_141158.1	chr17	26508098	26508298	-	1	NA	NA	NA	274	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.135000	0.691542	
mm_152364.1	chr19	10101417	10101617	-	1	NA	NA	NA	-14	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	0.105000	0.681592	
mm_51489.1	chr6	83056469	83056669	+	1	NA	NA	NA	-1275	NM_033606	93838	Mm.140332	NM_033606	ENSMUSG00000009145	Dqx1	2310066E11Rik	DEAQ RNA-dependent ATPase	protein-coding	0.020000	0.552239	
mm_172619.1	chr8	20122262	20122462	+	1	NA	NA	NA	175070	NR_030708	547150	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0.085000	0.661692	
mm_21955.1	chr2	167188672	167188872	-	1	NA	NA	NA	46	NM_008420	16500	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	0.120000	0.736318	
mm_163076.1	chr11	68176770	68176970	+	1	NA	NA	NA	-44022	NR_105833	102465219		NR_105833	ENSMUSG00000099174	Mir6406	Gm27981|mmu-mir-6406	microRNA 6406	ncRNA	0.020000	0.407960	
mm_7902.1	chr1	133660712	133660912	-	1	NA	NA	NA	73	NM_001166552	667118	Mm.245357	NM_001166552	ENSMUSG00000094410	Zbed6	Gm8466|MGR	zinc finger, BED type containing 6	protein-coding	0.040000	0.522388	
mm_49253.1	chr6	17339992	17340192	+	1	NA	NA	NA	32452	NM_001243064	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.010000	0.343284	
mm_76466.1	chr8	85380874	85381074	-	1	NA	NA	NA	67	NM_001297612	213435	Mm.32804	NM_175441	ENSMUSG00000031698	Mylk3	D830007F02Rik|MLCK	myosin light chain kinase 3	protein-coding	0.020000	0.592040	
mm_63430.1	chr7	127478718	127478918	+	1	NA	NA	NA	-6403	NM_010183	14123	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.055000	0.601990	-98(GACTCTTTAAAG,-,0.00),-96(CTCTTTAAAGGG,+,0.00),-96(CTCTTTAAAGGG,-,0.00),-95(TCTTTAAAGGGG,+,0.00),-55(CACTTTTAAAGG,-,0.00),-54(ACTTTTAAAGGG,+,0.00),-53(CTTTTAAAGGGG,+,0.00),-26(CCCCTTTTAAAG,-,0.00),-25(CCCTTTTAAAGG,-,0.00),-24(CCTTTTAAAGGG,+,0.00),-24(CCTTTTAAAGGG,-,0.00),-23(CTTTTAAAGGGG,+,0.00),73(TCGTCTTAAAGG,-,0.00),76(TCTTAAAGGGGC,+,0.00)
mm_129974.1	chr15	85811584	85811784	-	1	NA	NA	NA	13	NM_001164626	72355	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	0.080000	0.666667	
mm_60258.1	chr7	43797477	43797677	+	1	NA	NA	NA	0	NM_001324398	259277	Mm.458023	NM_008940	ENSMUSG00000064023	Klk8	BSP1|NP|Nrpn|Prss19	kallikrein related-peptidase 8	protein-coding	0.090000	0.656716	-30(CTCGTTAAAAGG,-,0.00)
mm_79398.1	chr9	54950690	54950890	+	1	NA	NA	NA	-69	NM_011966	26441	Mm.30270	NM_011966	ENSMUSG00000032301	Psma4	C9	proteasome (prosome, macropain) subunit, alpha type 4	protein-coding	0.090000	0.661692	
mm_16477.1	chr2	180738110	180738310	+	1	NA	NA	NA	12871	NM_183161	228993	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	0.000000	0.472637	
mm_155021.1	chrX	42060331	42060531	+	1	NA	NA	NA	-7405	NM_009688	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.015000	0.487562	-71(GCTTTAAGACCC,+,0.00),81(GTCCTTATAAGA,-,0.00)
mm_38298.1	chr4	136896073	136896273	-	1	NA	NA	NA	2671	NM_007572	12259	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	0.060000	0.631841	
mm_19705.1	chr2	103783066	103783266	-	1	NA	NA	NA	13912	NM_001111290	53872	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	0.005000	0.323383	
mm_158782.1	chrX	167207188	167207388	-	1	NA	NA	NA	1930	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.000000	0.477612	
mm_29228.1	chr3	107213343	107213543	-	1	NA	NA	NA	8289	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.507463	
mm_52281.1	chr6	108660549	108660749	+	1	NA	NA	NA	20	NM_011498	20893	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0.090000	0.716418	
mm_132320.1	chr16	33793919	33794119	+	1	NA	NA	NA	-18	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.000000	0.492537	
mm_87221.1	chr10	40349226	40349426	+	1	NA	NA	NA	18	NM_001291816	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.095000	0.631841	
mm_69175.1	chr7	127218276	127218476	-	1	NA	NA	NA	69	NM_017461	54204	Mm.18	NM_017461	ENSMUSG00000000486	Sept1	Diff6|Pnutl3	septin 1	protein-coding	0.015000	0.577114	
mm_89832.1	chr10	106615688	106615888	+	1	NA	NA	NA	-13308	NR_131026	75833	Mm.159596	NR_131026		4930532I03Rik	-	RIKEN cDNA 4930532I03 gene	ncRNA	0.000000	0.398010	
mm_47455.1	chr5	123612066	123612266	-	1	NA	NA	NA	-39151	NM_029929	77573	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0.025000	0.537313	
mm_9401.1	chr1	172234545	172234745	-	1	NA	NA	NA	-14750	NM_009813	12372	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.010000	0.507463	
mm_19864.1	chr2	113848600	113848800	-	1	NA	NA	NA	-39	NM_181416	228482	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	0.075000	0.626866	
mm_47011.1	chr5	115474614	115474814	-	1	NA	NA	NA	8448	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.035000	0.522388	
mm_160942.1	chr11	95145544	95145744	-	1	NA	NA	NA	157	NM_007867	13394	Mm.439766	NM_007867	ENSMUSG00000020871	Dlx4	Dlx-4|Dlx7	distal-less homeobox 4	protein-coding	0.035000	0.567164	
mm_142301.1	chr17	42692167	42692367	-	1	NA	NA	NA	17	NM_001289501	78249	Mm.66217	NM_030067	ENSMUSG00000023918	Adgrf4	4632435A09Rik|AV239010|Gpr115	adhesion G protein-coupled receptor F4	protein-coding	0.025000	0.532338	
mm_48584.1	chr5	143732144	143732344	-	1	NA	NA	NA	36	NM_029749	76800	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0.150000	0.800995	
mm_130530.1	chr15	98918037	98918237	-	1	NA	NA	NA	-39	NM_029098	74775	Mm.385020	NM_029098	ENSMUSG00000022999	Lmbr1l	1110013E13Rik|AA415653|D15Ertd735e|Limr	limb region 1 like	protein-coding	0.085000	0.646766	-32(CACCTTAAAGGG,-,0.00),-30(CCTTAAAGGGGA,+,0.00),4(CCTTTAAGACTA,+,0.00),31(GCCCCTTTAAGG,-,0.00),32(CCCCTTTAAGGG,-,0.00),33(CCCTTTAAGGGC,+,0.00),34(CCTTTAAGGGCG,+,0.00)
mm_124792.1	chr15	8112564	8112764	+	1	NA	NA	NA	3351	NM_133227	170762	Mm.295168	NM_133227	ENSMUSG00000022142	Nup155	D930027M19Rik|mKIAA0791	nucleoporin 155	protein-coding	0.000000	0.383085	57(CTTTTTAGAGCC,+,0.00)
mm_65832.1	chr7	29180393	29180593	-	1	NA	NA	NA	180	NM_026545	57296	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	0.130000	0.701493	
mm_141435.1	chr17	29519738	29519938	-	1	NA	NA	NA	28793	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.030000	0.512438	
mm_91819.1	chr10	55563462	55563662	-	1	NA	NA	NA	-543355	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding	0.005000	0.412935	
mm_149266.1	chr19	10577370	10577570	+	1	NA	NA	NA	-84	NR_126092	72982	Mm.391194	NM_028411	ENSMUSG00000024666	Tmem138	1700113I01Rik|2900055D14Rik	transmembrane protein 138	protein-coding	0.050000	0.606965	-50(GCCTATAAAAAT,-,0.00)
mm_159775.1	chr5	103911086	103911286	-	1	NA	NA	NA	43	NM_178741	246293	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0.195000	0.820896	
mm_51861.1	chr6	90486283	90486483	+	1	NA	NA	NA	23757	NM_023184	66277	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.020000	0.547264	
mm_44063.1	chr5	148399536	148399736	+	1	NA	NA	NA	268	NM_007513	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.070000	0.621891	
mm_67216.1	chr7	74448262	74448462	-	1	NA	NA	NA	106418	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.010000	0.452736	
mm_146598.1	chr18	9449971	9450171	-	1	NA	NA	NA	79	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.170000	0.726368	
mm_109377.1	chr12	109699991	109700191	+	1	NA	NA	NA	-8969	NR_029880	723858		NR_029880	ENSMUSG00000065498	Mir379	Mirn379|mir-379|mmu-mir-379	microRNA 379	ncRNA	0.020000	0.407960	
mm_57869.1	chr6	129678715	129678915	-	1	NA	NA	NA	158	NM_001288664	16641	Mm.56899	NM_010652	ENSMUSG00000030167	Klrc1	CD159a|NKG2A|NKG2B	killer cell lectin-like receptor subfamily C, member 1	protein-coding	0.025000	0.502488	
mm_70607.1	chr8	13404845	13405045	+	1	NA	NA	NA	-136	NM_011881	24013	Mm.257501	NM_011881	ENSMUSG00000031450	Grk1	Gprk1|Rhok|Rk	G protein-coupled receptor kinase 1	protein-coding	0.005000	0.577114	
mm_156023.1	chrX	107148942	107149142	+	1	NA	NA	NA	115	NM_001122596	213438	Mm.265244	NM_175442	ENSMUSG00000054293	A630033H20Rik	AI662791|P2ry10	RIKEN cDNA A630033H20 gene	protein-coding	0.010000	0.398010	
mm_93924.1	chr10	127136550	127136750	-	1	NA	NA	NA	-15490	NM_001171026	216440	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.000000	0.512438	
mm_140569.1	chr17	8566501	8566701	-	1	NA	NA	NA	39800	NM_001290707	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.015000	0.502488	
mm_158414.1	chrX	137117191	137117391	-	1	NA	NA	NA	3035	NM_007957	13984	Mm.8017	NM_007957	ENSMUSG00000023443	Esx1	Spx1	extraembryonic, spermatogenesis, homeobox 1	protein-coding	0.010000	0.388060	
mm_3454.1	chr1	150103577	150103777	+	1	NA	NA	NA	3646	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.293532	51(CCTTTTCAAGGA,+,0.00)
mm_150036.1	chr19	29377156	29377356	+	1	NA	NA	NA	9818	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.020000	0.412935	
mm_4456.1	chr1	172699040	172699240	+	1	NA	NA	NA	1084	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding	0.010000	0.477612	
mm_9622.1	chr1	176754318	176754518	-	1	NA	NA	NA	18005	NR_029775	723921		NR_029775	ENSMUSG00000065573	Mir350	Mirn350|mir-350|mmu-mir-350	microRNA 350	ncRNA	0.010000	0.452736	
mm_60906.1	chr7	46751734	46751934	+	1	NA	NA	NA	1	NM_011314	20209	Mm.200941	NM_011314	ENSMUSG00000057465	Saa2	AW111173|Saa-2|Saa1	serum amyloid A 2	protein-coding	0.005000	0.562189	
mm_50830.1	chr6	54681635	54681835	+	1	NA	NA	NA	111	NM_001289740	68235	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.100000	0.721393	
mm_113601.1	chr13	41236195	41236395	+	1	NA	NA	NA	-13549	NM_001135577	108934	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.015000	0.542289	
mm_83328.1	chr9	44233807	44234007	-	1	NA	NA	NA	139	NM_007619	12402	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.130000	0.761194	
mm_89808.1	chr10	103334470	103334670	+	1	NA	NA	NA	-33238	NM_001252330	103098	Mm.458408	NM_175328	ENSMUSG00000019894	Slc6a15	AA536730|AI326450|AI326451|v7-3	solute carrier family 6 (neurotransmitter transporter), member 15	protein-coding	0.000000	0.447761	
mm_156116.1	chrX	114897682	114897882	+	1	NA	NA	NA	-7230	NM_001276396	237009	Mm.302216	NM_207241	ENSMUSG00000050435	Ube2dnl1	Ube2dnl	ubiquitin-conjugating enzyme E2D N-terminal like 1	protein-coding	0.015000	0.447761	
mm_88993.1	chr10	81565868	81566068	+	1	NA	NA	NA	6524	NM_001276288	14797	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.020000	0.606965	
mm_162836.1	chr10	84293102	84293302	-	1	NA	NA	NA	147269	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.005000	0.462687	
mm_164347.1	chr16	17181542	17181742	+	1	NA	NA	NA	19850	NM_009456	22195	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0.010000	0.497512	
mm_15673.1	chr2	163491566	163491766	+	1	NA	NA	NA	-652	NM_001099331	100043899	Mm.442535	NM_001099331	ENSMUSG00000078949	R3hdml	OTTMUSG00000001070	R3H domain containing-like	protein-coding	0.015000	0.611940	
mm_104759.1	chr11	98477037	98477237	-	1	NA	NA	NA	30303	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.020000	0.557214	
mm_8875.1	chr1	162859969	162860169	-	1	NA	NA	NA	-69	NM_001330318	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.010000	0.552239	
mm_125565.1	chr15	59275265	59275465	+	1	NA	NA	NA	-31583	NR_045613	100416830	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0.005000	0.502488	
mm_25742.1	chr3	122924340	122924540	+	1	NA	NA	NA	43	NM_024461	67704	Mm.24219	NM_024461	ENSMUSG00000054091	1810037I17Rik	5730414I01Rik	RIKEN cDNA 1810037I17 gene	protein-coding	0.120000	0.651741	
mm_36075.1	chr4	58009025	58009225	-	1	NA	NA	NA	-1	NM_026132	67402	Mm.87357	NM_026132	ENSMUSG00000038709	Txndc8	4930429J24Rik|Sptrx-3|Sptrx3|Trx6	thioredoxin domain containing 8	protein-coding	0.005000	0.452736	-89(CAGCATAAAAGG,-,0.00)
mm_83541.1	chr9	46234424	46234624	-	1	NA	NA	NA	775	NM_001289833	11814	Mm.390161	NM_023114	ENSMUSG00000032081	Apoc3	apo-CIII|apoC-III	apolipoprotein C-III	protein-coding	0.030000	0.616915	
mm_26020.1	chr3	135438380	135438580	+	1	NA	NA	NA	185	NR_030689	319587	Mm.358971	NR_030689	ENSMUSG00000097032	4930539J05Rik	8030475D13Rik	RIKEN cDNA 4930539J05 gene	ncRNA	0.090000	0.646766	
mm_133545.1	chr16	91225471	91225671	+	1	NA	NA	NA	21	NM_016967	50913	Mm.37289	NM_016967	ENSMUSG00000039830	Olig2	AI604895|Bhlhb1|Olg-2|Oligo2|RK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding	0.070000	0.606965	-32(AGCTATAAAAAC,-,0.00)
mm_12353.1	chr2	69749439	69749639	+	1	NA	NA	NA	26451	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.015000	0.402985	
mm_108545.1	chr12	84361910	84362110	+	1	NA	NA	NA	42	NM_172582	217707	Mm.280062	NM_172582	ENSMUSG00000021235	Coq6	5930427M12Rik|AW742344	coenzyme Q6 monooxygenase	protein-coding	0.065000	0.552239	
mm_78734.1	chr9	41582933	41583133	+	1	NA	NA	NA	1107	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA	0.020000	0.442786	85(TCCTTTAAACCG,+,0.00)
mm_118698.1	chr14	22141426	22141626	+	1	NA	NA	NA	121814	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.010000	0.288557	
mm_32009.1	chr4	94739187	94739387	+	1	NA	NA	NA	-2	NM_001290549	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	0.010000	0.517413	
mm_108647.1	chr12	85960308	85960508	+	1	NA	NA	NA	118633	NM_009368	21809	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.015000	0.517413	
mm_25904.1	chr3	131112138	131112338	+	1	NA	NA	NA	-553	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.115000	0.686567	
mm_172945.1	chr9	81677844	81678044	+	1	NA	NA	NA	-45392	NM_010482	15551	Mm.445308	NM_010482	ENSMUSG00000049511	Htr1b	-	5-hydroxytryptamine (serotonin) receptor 1B	protein-coding	0.010000	0.383085	
mm_144461.1	chr18	23472180	23472380	+	1	NA	NA	NA	-25202	NM_001285808	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.000000	0.308458	86(TTTTTTAAACAC,+,0.00)
mm_139369.1	chr17	51569381	51569581	+	1	NA	NA	NA	-121212	NR_046166	328837	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	0.005000	0.383085	
mm_80680.1	chr9	91096943	91097143	+	1	NA	NA	NA	268756	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.040000	0.447761	
mm_105465.1	chr11	105181277	105181477	-	1	NA	NA	NA	56	NR_027956	73431	Mm.351426	NM_028539		1700052K11Rik	AI840954	RIKEN cDNA 1700052K11 gene	ncRNA	0.110000	0.766169	
mm_120998.1	chr14	79451716	79451916	+	1	NA	NA	NA	-19	NM_001034882	432879	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	0.075000	0.577114	
mm_118788.1	chr14	24118666	24118866	+	1	NA	NA	NA	29889	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.000000	0.437811	-34(ACCTCTATAAGC,-,0.00)
mm_3689.1	chr1	153751771	153751971	+	1	NA	NA	NA	2445	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.020000	0.512438	
mm_6294.1	chr1	71029877	71030077	-	1	NA	NA	NA	72995	NM_007525	12021	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	ENSMUSG00000060893|ENSMUSG00000073653	BRCA1 associated RING domain 1	protein-coding	0.000000	0.268657	-65(CTTTTTATAATG,+,0.00)
mm_107247.1	chr12	27183127	27183327	+	1	NA	NA	NA	-22711	NR_045870	636791	Mm.423496	NM_001039248	ENSMUSG00000094002	Gm9866	EG636791|ENSMUSG00000052076	predicted gene 9866	ncRNA	0.010000	0.492537	
mm_54121.1	chr6	18109016	18109216	-	1	NA	NA	NA	-55	NM_023729	74068	Mm.73091	NM_023729	ENSMUSG00000010796	Asz1	4933400N19Rik|Gasz|ORF3	ankyrin repeat, SAM and basic leucine zipper domain containing 1	protein-coding	0.075000	0.651741	
mm_146185.1	chr18	75820092	75820292	+	1	NA	NA	NA	14	NM_145356	207259	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0.165000	0.805970	
mm_112613.1	chr13	15463501	15463701	+	1	NA	NA	NA	-122	NM_008130	14634	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0.115000	0.706468	
mm_70986.1	chr8	27260403	27260603	+	1	NA	NA	NA	176	NM_007918	13685	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0.110000	0.736318	
mm_113420.1	chr13	34037537	34037737	+	1	NA	NA	NA	-4	NM_026512	68021	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0.090000	0.666667	
mm_85230.1	chr9	97743492	97743692	-	1	NA	NA	NA	-259828	NR_110443	66737	Mm.445908	NR_110443	ENSMUSG00000090255	4921534H16Rik	-	RIKEN cDNA 4921534H16 gene	ncRNA	0.005000	0.467662	-51(CCATTTCTAGCC,+,0.00)
mm_172621.1	chr8	20148847	20149047	+	1	NA	NA	NA	148485	NR_030708	547150	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0.000000	0.398010	
mm_82001.1	chr9	121675151	121675351	+	1	NA	NA	NA	29778	NM_001164562	215474	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.020000	0.557214	
mm_103225.1	chr11	70669194	70669394	-	1	NA	NA	NA	122	NM_172561	216873	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0.080000	0.611940	-50(CGGCCTTAAAGG,-,0.00),-49(GGCCTTAAAGGC,-,0.00),-25(CCTTTAAGACGC,+,0.00)
mm_129902.1	chr15	83920080	83920280	-	1	NA	NA	NA	-807	NM_001161629	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	0.030000	0.532338	
mm_14945.1	chr2	151842823	151843023	+	1	NA	NA	NA	-4	NM_001040689	228770	Mm.159868	NM_001040689	ENSMUSG00000032852	Rspo4	A730099F22|A930029K19Rik	R-spondin 4	protein-coding	0.155000	0.796020	
mm_150353.1	chr19	34647819	34648019	+	1	NA	NA	NA	7030	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.020000	0.522388	
mm_51885.1	chr6	90601881	90602081	+	1	NA	NA	NA	-2899	NM_027868	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.015000	0.587065	
mm_165151.1	chr2	20598342	20598542	+	1	NA	NA	NA	78929	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.000000	0.298507	
mm_117766.1	chr13	96471085	96471285	-	1	NA	NA	NA	-25	NM_001042714	271144	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0.030000	0.626866	
mm_77060.1	chr8	109693107	109693307	-	1	NA	NA	NA	87	NM_028018	71955	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0.095000	0.611940	
mm_51739.1	chr6	87277616	87277816	+	1	NA	NA	NA	58059	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.010000	0.532338	
mm_161685.1	chr17	20502360	20502560	+	1	NA	NA	NA	161	NM_134194	171228	Mm.377186	NM_134194	ENSMUSG00000043537	Vmn1r225	V1re5	vomeronasal 1 receptor 225	protein-coding	0.000000	0.333333	
mm_45130.1	chr5	48780943	48781143	-	1	NA	NA	NA	108514	NM_030265	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.000000	0.358209	
mm_126336.1	chr15	79897632	79897832	+	1	NA	NA	NA	2709	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.020000	0.507463	-14(CTTTTTATACTG,+,0.00)
mm_136252.1	chr16	90946760	90946960	-	1	NA	NA	NA	-12011	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.040000	0.452736	
mm_22907.1	chr3	30995711	30995911	+	1	NA	NA	NA	40	NM_008857	18759	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	0.150000	0.771144	
mm_16199.1	chr2	173021801	173022001	+	1	NA	NA	NA	-1	NM_019547	56190	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.145000	0.686567	
mm_97728.1	chr11	80389318	80389518	+	1	NA	NA	NA	6139	NM_001130171	22680	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0.005000	0.333333	
mm_167496.1	chr9	13296493	13296693	+	1	NA	NA	NA	49637	NM_025534	66396	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.035000	0.616915	
mm_169086.1	chr1	33679972	33680172	-	1	NA	NA	NA	10248	NR_033199	67503	Mm.87069	NM_026204	ENSMUSG00000103746	1700001G17Rik	-	RIKEN cDNA 1700001G17 gene	ncRNA	0.015000	0.482587	
mm_115979.1	chr13	24222047	24222247	-	1	NA	NA	NA	58643	NM_001311122	68732	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0.005000	0.368159	34(CTCTTTATAGGT,+,0.00)
mm_4961.1	chr1	191266984	191267184	+	1	NA	NA	NA	51034	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.020000	0.522388	
mm_26674.1	chr3	154796172	154796372	+	1	NA	NA	NA	85139	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.020000	0.477612	
mm_19092.1	chr2	79369015	79369215	-	1	NA	NA	NA	59873	NM_001048176	228094	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0.020000	0.512438	
mm_68962.1	chr7	126583116	126583316	-	1	NA	NA	NA	20	NM_001329789	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.060000	0.621891	-97(TGCTCTTAAAGG,-,0.00),-96(GCTCTTAAAGGT,+,0.00)
mm_13885.1	chr2	120013087	120013287	+	1	NA	NA	NA	-4330	NR_106125	102466842		NR_106125	ENSMUSG00000098632	Mir7665	Gm27478|mmu-mir-7665	microRNA 7665	ncRNA	0.020000	0.562189	
mm_101282.1	chr11	21571692	21571892	-	1	NA	NA	NA	142	NM_008618	17449	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	0.050000	0.601990	
mm_130581.1	chr15	99534773	99534973	-	1	NA	NA	NA	-6708	NM_001038658	72393	Mm.39760	NM_028224	ENSMUSG00000023011	Faim2	2900002L20Rik|Lfg|Lfg2|NMP25|Nmp35|Tmbim2	Fas apoptotic inhibitory molecule 2	protein-coding	0.025000	0.502488	
mm_66372.1	chr7	43656547	43656747	-	1	NA	NA	NA	3514	NM_031181	83382	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.020000	0.527363	
mm_111333.1	chr12	86734201	86734401	-	1	NA	NA	NA	-68	NM_001195767	627607	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0.020000	0.487562	
mm_137422.1	chr17	26203721	26203921	+	1	NA	NA	NA	859	NM_001081069	50782	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	0.030000	0.552239	
mm_129275.1	chr15	77058457	77058657	-	1	NA	NA	NA	-7889	NM_013593	17189	Mm.404074	NM_013593	ENSMUSG00000018893	Mb	AI325109	myoglobin	protein-coding	0.005000	0.427861	-34(TGCTTTAAATGG,-,0.00),-32(CTTTAAATGGAG,+,0.00)
mm_122458.1	chr14	45388704	45388904	-	1	NA	NA	NA	-8	NM_019425	54342	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding	0.135000	0.766169	
mm_169449.1	chr1	46075883	46076083	-	1	NA	NA	NA	9245	NM_001160386	227058	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	0.020000	0.412935	
mm_104252.1	chr11	88876990	88877190	-	1	NA	NA	NA	-12504	NM_001042541	11640	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	0.020000	0.477612	
mm_38703.1	chr4	145215145	145215345	-	1	NA	NA	NA	-20240	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.005000	0.512438	
mm_154334.1	chrM	3340	3540	+	1	NA	NA	NA	NA	NA									0.035000	0.388060	
mm_1620.1	chr1	74391717	74391917	+	1	NA	NA	NA	208	NM_153088	227292	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.115000	0.791045	
mm_29655.1	chr3	122408739	122408939	-	1	NA	NA	NA	-10941	NM_013867	29815	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0.040000	0.472637	
mm_22037.1	chr2	168206705	168206905	-	1	NA	NA	NA	307	NM_009628	11538	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0.180000	0.825871	
mm_66396.1	chr7	44246600	44246800	-	1	NA	NA	NA	-22	NM_025880	668661	Mm.274492	NM_025880	ENSMUSG00000045411	2410002F23Rik	-	RIKEN cDNA 2410002F23 gene	protein-coding	0.110000	0.661692	-65(CCATTTATAGCG,+,0.00)
mm_27555.1	chr3	58525037	58525237	-	1	NA	NA	NA	-684	NM_001005509	229317	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	0.045000	0.537313	
mm_38024.1	chr4	133813200	133813400	-	1	NA	NA	NA	-59689	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.090000	0.666667	
mm_95341.1	chr11	47933819	47934019	+	1	NA	NA	NA	140664	NR_105801	102466638		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	0.000000	0.432836	-13(GACCATAAAGGA,-,0.00),24(GTTTATATAGTC,+,0.00)
mm_32703.1	chr4	116075368	116075568	+	1	NA	NA	NA	199	NM_153521	230654	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	0.125000	0.746269	
mm_101655.1	chr11	36677416	36677616	-	1	NA	NA	NA	266725	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.050000	0.527363	
mm_132311.1	chr16	33720744	33720944	+	1	NA	NA	NA	36378	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629|OTTMUSG00000027315	heart development protein with EGF-like domains 1	protein-coding	0.040000	0.572139	
mm_160387.1	chr8	46294665	46294865	-	1	NA	NA	NA	-94	NM_173789	234219	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	0.090000	0.621891	
mm_144640.1	chr18	33007416	33007616	+	1	NA	NA	NA	68475	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.000000	0.293532	
mm_83250.1	chr9	42400063	42400263	-	1	NA	NA	NA	-234	NM_001324548	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.015000	0.472637	
mm_107167.1	chr12	24707718	24707918	+	1	NA	NA	NA	-436	NM_009104	20135	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0.030000	0.522388	-86(GCTTTTAAACTA,+,0.00),-36(GGGTAGAAAAGG,-,0.00),17(AGCTTTTTAGGG,-,0.00),19(CTTTTTAGGGAA,+,0.00)
mm_46841.1	chr5	113339994	113340194	-	1	NA	NA	NA	-2449	NR_106089	102466821		NR_106089	ENSMUSG00000104840	Mir7230	mmu-mir-7230	microRNA 7230	ncRNA	0.010000	0.517413	
mm_96915.1	chr11	70460065	70460265	+	1	NA	NA	NA	-181	NM_023158	66102	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.040000	0.542289	
mm_86689.1	chr10	18431154	18431354	+	1	NA	NA	NA	23579	NM_173390	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.030000	0.606965	
mm_124814.1	chr15	8968244	8968444	+	1	NA	NA	NA	395	NM_198024	223332	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0.040000	0.472637	
mm_69859.1	chr7	141434469	141434669	-	1	NA	NA	NA	25	NM_001177576	68267	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0.025000	0.592040	-86(GCATTAAAAGGC,+,0.00),-68(CCCTTTAAAAAC,+,0.00),-68(CCCTTTAAAAAC,-,0.00)
mm_66802.1	chr7	47133609	47133809	-	1	NA	NA	NA	-25	NM_013643	19259	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0.015000	0.512438	59(GAGCATTAAAGG,-,0.00),61(GCATTAAAGGAC,+,0.00)
mm_16952.1	chr2	17368533	17368733	-	1	NA	NA	NA	-194881	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	0.000000	0.398010	-10(CCTTTTATGCAT,+,0.00),26(CTATTTATAAGC,-,0.00)
mm_88731.1	chr10	80226696	80226896	+	1	NA	NA	NA	198	NM_023431	68114	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	0.140000	0.805970	
mm_96111.1	chr11	60557799	60557999	+	1	NA	NA	NA	20216	NM_172943	268420	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.005000	0.378109	
mm_130689.1	chr15	100681866	100682066	-	1	NA	NA	NA	5954	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.025000	0.502488	
mm_163197.1	chr11	95922413	95922613	+	1	NA	NA	NA	-7642	NM_008081	14422	Mm.340702	NM_008081	ENSMUSG00000013418	B4galnt2	AI593864|Dlb-1|Dlb1|Galg2|Galgt2|Ggm3|Igf2bp1	beta-1,4-N-acetyl-galactosaminyl transferase 2	protein-coding	0.015000	0.452736	
mm_141132.1	chr17	26206329	26206529	-	1	NA	NA	NA	3467	NM_001081069	50782	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	0.005000	0.487562	84(GTTTTTATATAC,+,0.00)
mm_115519.1	chr13	5845703	5845903	-	1	NA	NA	NA	12289	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.010000	0.398010	
mm_39461.1	chr5	17814677	17814877	+	1	NA	NA	NA	21119	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.010000	0.437811	
mm_90262.1	chr10	122678537	122678737	+	1	NA	NA	NA	-125	NM_176919	319468	Mm.489703	NM_176919	ENSMUSG00000034613	Ppm1h	A430075L18Rik|ARHCL1|C030002B11Rik	protein phosphatase 1H (PP2C domain containing)	protein-coding	0.050000	0.656716	
mm_57093.1	chr6	122587585	122587785	-	1	NA	NA	NA	14759	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.005000	0.462687	
mm_77110.1	chr8	111081719	111081919	-	1	NA	NA	NA	-111	NM_181549	353287	Mm.135495	NM_181549	ENSMUSG00000033633	Clec18a	Mrcl	C-type lectin domain family 18, member A	protein-coding	0.020000	0.552239	
mm_10393.1	chr2	13573595	13573795	+	1	NA	NA	NA	-616	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.025000	0.552239	
mm_161853.1	chr18	15409310	15409510	-	1	NA	NA	NA	1572	NM_001308643	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.015000	0.497512	
mm_22482.1	chr3	5221135	5221335	+	1	NA	NA	NA	-412	NR_045905	72608	Mm.384359	NR_045905		2700069I18Rik	-	RIKEN cDNA 2700069I18 gene	ncRNA	0.010000	0.467662	
mm_59298.1	chr7	25088372	25088572	+	1	NA	NA	NA	8703	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.030000	0.333333	-71(ACGTATAAAAAG,-,0.00)
mm_11268.1	chr2	30061711	30061911	+	1	NA	NA	NA	-185	NM_023871	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.045000	0.626866	
mm_41516.1	chr5	92387781	92387981	+	1	NA	NA	NA	-253	NM_181728	109979	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0.000000	0.437811	
mm_57610.1	chr6	128124243	128124443	-	1	NA	NA	NA	19235	NM_175414	109246	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597	tetraspanin 9	protein-coding	0.020000	0.522388	
mm_7507.1	chr1	123340857	123341057	-	1	NA	NA	NA	704602	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.407960	-61(GGTTATATAAAG,-,0.00)
mm_153767.1	chr19	45591901	45592101	-	1	NA	NA	NA	31386	NM_172639	226162	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	5330431N19Rik|Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.025000	0.527363	
mm_147836.1	chr18	62578831	62579031	-	1	NA	NA	NA	17333	NM_001001803	408198	Mm.478742	NM_001001803	ENSMUSG00000060201	Spink7	EG408198|Ecg2	serine peptidase inhibitor, Kazal type 7 (putative)	protein-coding	0.015000	0.512438	
mm_62190.1	chr7	97579785	97579985	+	1	NA	NA	NA	-11	NM_001081267	233532	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	0.115000	0.731343	
mm_5554.1	chr1	38664874	38665074	-	1	NA	NA	NA	-37730	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.035000	0.507463	
mm_7223.1	chr1	93342515	93342715	-	1	NA	NA	NA	173	NM_080850	269224	Mm.379454	NM_080850	ENSMUSG00000026274	Pask	mKIAA0135	PAS domain containing serine/threonine kinase	protein-coding	0.090000	0.631841	
mm_135364.1	chr16	44027835	44028035	-	1	NA	NA	NA	10	NM_001172107	207798	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.050000	0.601990	
mm_54383.1	chr6	31217415	31217615	-	1	NA	NA	NA	959	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.050000	0.636816	
mm_96524.1	chr11	68496556	68496756	+	1	NA	NA	NA	-6363	NM_001004435	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.000000	0.487562	
mm_16046.1	chr2	167742675	167742875	+	1	NA	NA	NA	51598	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.025000	0.492537	
mm_80660.1	chr9	90054502	90054702	+	1	NA	NA	NA	335	NM_001312649	13036	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.075000	0.696517	
mm_50530.1	chr6	49045352	49045552	+	1	NA	NA	NA	8934	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.020000	0.472637	
mm_73277.1	chr8	104624428	104624628	+	1	NA	NA	NA	-132	NM_001252628	12556	Mm.19423	NM_007663	ENSMUSG00000031881	Cdh16	-	cadherin 16	protein-coding	0.000000	0.522388	
mm_22351.1	chr2	180920903	180921103	-	1	NA	NA	NA	-67	NM_173761	228994	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	0.170000	0.736318	
mm_99962.1	chr11	113683924	113684124	+	1	NA	NA	NA	127	NM_138598	28081	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0.145000	0.751244	
mm_126311.1	chr15	79668444	79668644	+	1	NA	NA	NA	-2324	NM_172609	223696	Mm.246435	NM_172609	ENSMUSG00000022427	Tomm22	2310047D01|Tom22	translocase of outer mitochondrial membrane 22 homolog (yeast)	protein-coding	0.010000	0.512438	
mm_108328.1	chr12	79891219	79891419	+	1	NA	NA	NA	33414	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.005000	0.577114	
mm_99526.1	chr11	103170754	103170954	+	1	NA	NA	NA	-284	NM_001077698	57778	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.150000	0.825871	
mm_65415.1	chr7	25245426	25245626	-	1	NA	NA	NA	5232	NM_010155	13875	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.025000	0.592040	
mm_90656.1	chr10	128799874	128800074	+	1	NA	NA	NA	4396	NM_178066	73827	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	0.015000	0.437811	
mm_23973.1	chr3	85712220	85712420	+	1	NA	NA	NA	33889	NM_172682	229488	Mm.119926	NM_172682	ENSMUSG00000051000	Fam160a1	9930021J17Rik	family with sequence similarity 160, member A1	protein-coding	0.030000	0.532338	
mm_136610.1	chr17	5332463	5332663	+	1	NA	NA	NA	86204	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.015000	0.507463	
mm_69096.1	chr7	127019397	127019597	-	1	NA	NA	NA	1714	NM_001102563	69017	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.035000	0.597015	
mm_55574.1	chr6	71396070	71396270	-	1	NA	NA	NA	22743	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.000000	0.482587	
mm_134758.1	chr16	23225241	23225441	-	1	NA	NA	NA	601	NM_145933	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.075000	0.726368	
mm_35815.1	chr4	46991493	46991693	-	1	NA	NA	NA	121	NM_001081141	242425	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	0.175000	0.786070	
mm_127860.1	chr15	8351309	8351509	-	1	NA	NA	NA	93054	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.020000	0.378109	
mm_29152.1	chr3	106001361	106001561	-	1	NA	NA	NA	36	NM_029604	100503311	Mm.386825	NM_029604	ENSMUSG00000010136	Pifo	1700027A23Rik	primary cilia formation	protein-coding	0.045000	0.537313	
mm_24864.1	chr3	95929331	95929531	+	1	NA	NA	NA	174	NM_023210	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.085000	0.577114	
mm_18989.1	chr2	76863284	76863484	-	1	NA	NA	NA	119163	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.010000	0.432836	
mm_109115.1	chr12	105513317	105513517	+	1	NA	NA	NA	-16	NR_102381	104932	Mm.274150	NR_102381		AU015791	-	expressed sequence AU015791	ncRNA	0.015000	0.487562	-33(TCCTATAAAGCC,+,0.00)
mm_27213.1	chr3	35932781	35932981	-	1	NA	NA	NA	85	NM_001205361	114893	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.155000	0.800995	
mm_21718.1	chr2	164638503	164638703	-	1	NA	NA	NA	199	NM_001012723	277345	Mm.247244	NM_001012723	ENSMUSG00000070530	Wfdc16	BC043944|WAP16	WAP four-disulfide core domain 16	protein-coding	0.010000	0.592040	
mm_152493.1	chr19	11055766	11055966	-	1	NA	NA	NA	-5300	NR_102366	107350	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.005000	0.402985	
mm_121996.1	chr14	26591471	26591671	-	1	NA	NA	NA	12021	NM_145969	211922	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	0.000000	0.537313	
mm_66474.1	chr7	44997149	44997349	-	1	NA	NA	NA	330	NM_029410	75736	Mm.261006	NM_029410	ENSMUSG00000003190	Bcl2l12	2810475P17Rik|5430429M05Rik|Bcl-L12|Bcl2-L12	BCL2-like 12 (proline rich)	protein-coding	0.040000	0.512438	
mm_14275.1	chr2	128738172	128738372	+	1	NA	NA	NA	39275	NM_008587	17289	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.030000	0.522388	
mm_67107.1	chr7	70354436	70354636	-	1	NA	NA	NA	6057	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.000000	0.338308	
mm_171612.1	chr4	150237202	150237402	+	1	NA	NA	NA	-22	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.065000	0.601990	
mm_118828.1	chr14	25607230	25607430	+	1	NA	NA	NA	3817	NM_001309430	100188919	Mm.473810	NM_001309430		Israa	-	immune system released activating agent	protein-coding	0.075000	0.656716	
mm_76164.1	chr8	82378976	82379176	-	1	NA	NA	NA	23510	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.000000	0.368159	
mm_31994.1	chr4	89688076	89688276	+	1	NA	NA	NA	-22	NM_175647	242523	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	0.060000	0.631841	-31(GCTCTTAGACCC,+,0.00)
mm_9734.1	chr1	180229952	180230152	-	1	NA	NA	NA	15898	NM_011183	19165	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.015000	0.587065	
mm_101161.1	chr11	16973068	16973268	-	1	NA	NA	NA	21758	NM_176982	319701	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.000000	0.432836	
mm_157390.1	chrX	38405409	38405609	-	1	NA	NA	NA	50951	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.010000	0.427861	
mm_162688.1	chr10	18235493	18235693	-	1	NA	NA	NA	-612	NM_144820	215814	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	0.050000	0.472637	
mm_135030.1	chr16	32810361	32810561	-	1	NA	NA	NA	-15	NM_001256309	381043	Mm.303864	NM_001256309	ENSMUSG00000094430	Gm933	Gm1743	predicted gene 933	protein-coding	0.000000	0.547264	
mm_32655.1	chr4	115088807	115089007	+	1	NA	NA	NA	199	NM_001164557	67182	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	0.030000	0.592040	-17(CCTTAAATGCCA,+,0.00)
mm_95486.1	chr11	51577791	51577991	+	1	NA	NA	NA	-6866	NM_028398	72947	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.020000	0.517413	
mm_46886.1	chr5	113961715	113961915	-	1	NA	NA	NA	31942	NM_198109	231637	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot homolog 1 (Drosophila)	protein-coding	0.010000	0.507463	
mm_147470.1	chr18	46726830	46727030	-	1	NA	NA	NA	1412	NM_033037	12583	Mm.241056	NM_033037	ENSMUSG00000033022	Cdo1	1300002L19Rik|Cdo|D18Ucla3	cysteine dioxygenase 1, cytosolic	protein-coding	0.015000	0.427861	
mm_156090.1	chrX	110836954	110837154	+	1	NA	NA	NA	22675	NM_008901	18994	Mm.56946	NM_008901	ENSMUSG00000056854	Pou3f4	Brn-4|Brn4|OTF-9|Otf9|Slf|oct-9	POU domain, class 3, transcription factor 4	protein-coding	0.000000	0.313433	
mm_122034.1	chr14	29852259	29852459	-	1	NA	NA	NA	-116021	NM_019979	80795	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	0.015000	0.467662	-70(CCCTTTAGAGTT,+,0.00),54(GATTTTATAGGC,+,0.00)
mm_19553.1	chr2	98666531	98666731	-	1	NA	NA	NA	1198974	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.030000	0.363184	
mm_96391.1	chr11	67249761	67249961	+	1	NA	NA	NA	12049	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.010000	0.422886	
mm_122795.1	chr14	54462698	54462898	-	1	NA	NA	NA	-1349	NM_022993	65107	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	0.000000	0.398010	-35(GCATATAAAAGA,-,0.00)
mm_172152.1	chr6	41200305	41200505	-	1	NA	NA	NA	-101867	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.030000	0.562189	
mm_69978.1	chr7	142377334	142377534	-	1	NA	NA	NA	-3688	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.020000	0.532338	
mm_70449.1	chr8	11758296	11758496	+	1	NA	NA	NA	66	NM_001113518	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.125000	0.706468	
mm_95796.1	chr11	55098041	55098241	+	1	NA	NA	NA	156	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.100000	0.671642	-33(GTCTTTAAAGGC,+,0.00),-33(GTCTTTAAAGGC,-,0.00),-32(TCTTTAAAGGCA,+,0.00)
mm_124935.1	chr15	12230339	12230539	+	1	NA	NA	NA	25345	NM_172958	268783	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.015000	0.412935	
mm_134030.1	chr16	5011667	5011867	-	1	NA	NA	NA	1786	NM_133185	66049	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	0.015000	0.582090	
mm_4605.1	chr1	178448537	178448737	+	1	NA	NA	NA	42756	NM_026626	68226	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.015000	0.467662	
mm_110724.1	chr12	69682105	69682305	-	1	NA	NA	NA	-353	NM_001135559	20663	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	son of sevenless homolog 2 (Drosophila)	protein-coding	0.155000	0.786070	
mm_67060.1	chr7	67528885	67529085	-	1	NA	NA	NA	116251	NM_175124	67867	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	0.075000	0.557214	
mm_4594.1	chr1	178337204	178337404	+	1	NA	NA	NA	480	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.145000	0.741294	
mm_108603.1	chr12	85468911	85469111	+	1	NA	NA	NA	-4890	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.035000	0.467662	
mm_41588.1	chr5	93267484	93267684	+	1	NA	NA	NA	11	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0.110000	0.716418	
mm_2357.1	chr1	92950761	92950961	+	1	NA	NA	NA	-271	NR_015525	100037260	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	0.005000	0.547264	
mm_14159.1	chr2	126602382	126602582	+	1	NA	NA	NA	16196	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.020000	0.467662	
mm_159205.1	chr2	121350918	121351118	-	1	NA	NA	NA	-5	NM_178795	327655	Mm.386076	NM_178795	ENSMUSG00000033526	Ppip5k1	B430315C20Rik|Hisppd2a|mKIAA0377	diphosphoinositol pentakisphosphate kinase 1	protein-coding	0.010000	0.482587	
mm_123703.1	chr14	69787019	69787219	-	1	NA	NA	NA	18426	NM_153514	246710	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0.015000	0.472637	
mm_140374.1	chr17	86980990	86981190	+	1	NA	NA	NA	17979	NM_145491	104215	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.010000	0.517413	
mm_138981.1	chr17	45456917	45457117	+	1	NA	NA	NA	17921	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.005000	0.492537	
mm_7265.1	chr1	95626457	95626657	-	1	NA	NA	NA	41037	NM_009183	20452	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.010000	0.487562	
mm_85875.1	chr9	110947167	110947367	-	1	NA	NA	NA	-1109	NM_011562	21667	Mm.5090	NM_011562	ENSMUSG00000032494	Tdgf1	CR1|cripto	teratocarcinoma-derived growth factor 1	protein-coding	0.050000	0.502488	
mm_66661.1	chr7	45716942	45717142	-	1	NA	NA	NA	960	NM_203280	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.015000	0.487562	28(CCATTTAAAGTT,+,0.00)
mm_34590.1	chr4	150189059	150189259	+	1	NA	NA	NA	11976	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.015000	0.472637	
mm_97314.1	chr11	76891020	76891220	+	1	NA	NA	NA	-13425	NM_025655	66601	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.020000	0.452736	
mm_1658.1	chr1	74713116	74713316	+	1	NA	NA	NA	-319	NM_024264	104086	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0.030000	0.606965	
mm_149739.1	chr19	22447802	22448002	+	1	NA	NA	NA	-306	NM_177341	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.020000	0.542289	
mm_100332.1	chr11	118318929	118319129	+	1	NA	NA	NA	23505	NM_021440	58251	Mm.439815	NM_021440	ENSMUSG00000076433	BC100451	Cep295nl|Ddc8|FS39|Kiaa1731nl	cDNA sequence BC100451	protein-coding	0.010000	0.477612	
mm_17805.1	chr2	33371393	33371593	-	1	NA	NA	NA	1	NM_001290570	241308	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0.105000	0.691542	
mm_149249.1	chr19	10389110	10389310	+	1	NA	NA	NA	120	NM_173068	54525	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0.120000	0.656716	
mm_65848.1	chr7	29256314	29256514	-	1	NA	NA	NA	-7947	NM_028179	72275	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0.010000	0.338308	59(CCTTTTAAAATA,+,0.00)
mm_136489.1	chr16	96124821	96125021	-	1	NA	NA	NA	2804	NM_008251	15312	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	0.010000	0.412935	
mm_28286.1	chr3	89089565	89089765	-	1	NA	NA	NA	366	NM_001083808	72296	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.035000	0.577114	
mm_145302.1	chr18	53345138	53345338	+	1	NA	NA	NA	72769	NM_008908	19038	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding	0.010000	0.333333	
mm_104181.1	chr11	87757167	87757367	-	1	NA	NA	NA	-312	NR_106176	102466883		NR_106176	ENSMUSG00000065420	Mir142b	Gm27750|mmu-mir-142b	microRNA 142b	ncRNA	0.050000	0.562189	
mm_14431.1	chr2	130576073	130576273	+	1	NA	NA	NA	4	NM_011025	18429	Mm.16745	NM_011025	ENSMUSG00000027301	Oxt	OT|Oxy	oxytocin	protein-coding	0.030000	0.572139	
mm_59764.1	chr7	28832285	28832485	+	1	NA	NA	NA	-1409	NM_010706	16855	Mm.210336	NM_010706	ENSMUSG00000053964	Lgals4	gal-4	lectin, galactose binding, soluble 4	protein-coding	0.020000	0.562189	
mm_169950.1	chr16	76519540	76519740	-	1	NA	NA	NA	-146591	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.035000	0.507463	
mm_132556.1	chr16	37916357	37916557	+	1	NA	NA	NA	-39	NM_153394	239845	Mm.228018	NM_153394	ENSMUSG00000046961	Gpr156	Gababl	G protein-coupled receptor 156	protein-coding	0.130000	0.736318	
mm_105993.1	chr11	115628179	115628379	-	1	NA	NA	NA	16	NM_001252394	67283	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.080000	0.587065	
mm_129279.1	chr15	77153574	77153774	-	1	NA	NA	NA	138	NM_001110830	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.040000	0.567164	-6(ACGTTTAAAGGG,-,0.00)
mm_68799.1	chr7	125349699	125349899	-	1	NA	NA	NA	-13	NR_045803	71208	Mm.159465	NM_172408	ENSMUSG00000045928	4933440M02Rik	-	RIKEN cDNA 4933440M02 gene	ncRNA	0.015000	0.522388	
mm_2592.1	chr1	119453833	119454033	+	1	NA	NA	NA	-31685	NM_008381	16324	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	0.010000	0.502488	
mm_55620.1	chr6	72235094	72235294	-	1	NA	NA	NA	383	NM_153778	71093	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0.145000	0.711443	
mm_134147.1	chr16	10784805	10785005	-	1	NA	NA	NA	631	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.090000	0.706468	
mm_154766.1	chrX	12157610	12157810	+	1	NA	NA	NA	2636	NR_045434	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.055000	0.597015	
mm_48189.1	chr5	137528801	137529001	-	1	NA	NA	NA	693	NR_105846	102465227		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0.025000	0.547264	
mm_147422.1	chr18	46212356	46212556	-	1	NA	NA	NA	151	NM_178872	28105	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.045000	0.587065	
mm_84023.1	chr9	57682111	57682311	-	1	NA	NA	NA	1444	NM_009993	13077	Mm.15537	NM_009993	ENSMUSG00000032310	Cyp1a2	CP12|Cyp1a1|P450-3	cytochrome P450, family 1, subfamily a, polypeptide 2	protein-coding	0.050000	0.616915	
mm_89822.1	chr10	105573062	105573262	+	1	NA	NA	NA	1317	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.040000	0.393035	
mm_46616.1	chr5	108132397	108132597	-	1	NA	NA	NA	94	NM_001347383	73130	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik	transmembrane p24 trafficking protein 5	protein-coding	0.070000	0.636816	
mm_43149.1	chr5	125495886	125496086	+	1	NA	NA	NA	20113	NM_030210	78894	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0.020000	0.537313	
mm_90158.1	chr10	118715807	118716007	+	1	NA	NA	NA	152996	NM_001014390	69181	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.035000	0.477612	
mm_110307.1	chr12	33061712	33061912	-	1	NA	NA	NA	31063	NM_001024478	68764	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	0.025000	0.532338	
mm_54006.1	chr6	7773574	7773774	-	1	NA	NA	NA	-71550	NM_052993	94192	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.000000	0.517413	-33(GGGTATAAGAGG,-,0.00)
mm_31397.1	chr4	48045182	48045382	+	1	NA	NA	NA	-23	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.095000	0.691542	
mm_17987.1	chr2	37896507	37896707	-	1	NA	NA	NA	120358	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.005000	0.338308	
mm_101262.1	chr11	21091869	21092069	-	1	NA	NA	NA	645	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.075000	0.597015	
mm_27889.1	chr3	79286611	79286811	-	1	NA	NA	NA	-58665	NM_001142953	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.135000	0.716418	
mm_50395.1	chr6	48718508	48718708	+	1	NA	NA	NA	-13	NM_146167	231932	Mm.30479	NM_146167	ENSMUSG00000043931	Gimap7	IAN7|Ian3	GTPase, IMAP family member 7	protein-coding	0.005000	0.512438	
mm_153945.1	chr19	47536923	47537123	-	1	NA	NA	NA	-3	NM_175360	108689	Mm.218048	NM_175360	ENSMUSG00000042694	Obfc1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|RPA-32	oligonucleotide/oligosaccharide-binding fold containing 1	protein-coding	0.080000	0.611940	
mm_142789.1	chr17	50164104	50164304	-	1	NA	NA	NA	26293	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.020000	0.452736	
mm_161561.1	chr16	17406278	17406478	-	1	NA	NA	NA	-64	NM_001001983	224020	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase, catalytic, alpha polypeptide	protein-coding	0.055000	0.477612	-34(GTTTTTATAACG,+,0.00)
mm_110887.1	chr12	75549538	75549738	-	1	NA	NA	NA	46562	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.000000	0.452736	0(CAGTTTAAAGGC,-,0.00)
mm_127397.1	chr15	101134488	101134688	+	1	NA	NA	NA	6066	NM_001277257	11482	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	0.015000	0.542289	
mm_105564.1	chr11	106530009	106530209	-	1	NA	NA	NA	29118	NR_030703	100216537		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.000000	0.532338	
mm_125108.1	chr15	27826516	27826716	+	1	NA	NA	NA	-145074	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.005000	0.467662	-33(CTGTATTAAAGG,-,0.00)
mm_168133.1	chr10	27936245	27936445	+	1	NA	NA	NA	-138475	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0.020000	0.383085	
mm_145411.1	chr18	57533754	57533954	+	1	NA	NA	NA	28	NM_029290	75444	Mm.482900	NM_029290	ENSMUSG00000058925	1700011I03Rik	4930583I06Rik	RIKEN cDNA 1700011I03 gene	protein-coding	0.010000	0.467662	
mm_156359.1	chrX	139480269	139480469	+	1	NA	NA	NA	2	NM_001346522	102871	Mm.26565	NM_175326	ENSMUSG00000042498	D330045A20Rik	AI132325	RIKEN cDNA D330045A20 gene	protein-coding	0.045000	0.492537	
mm_66016.1	chr7	30598774	30598974	-	1	NA	NA	NA	-5932	NM_021397	58206	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	0.035000	0.557214	
mm_51124.1	chr6	68219840	68220040	+	1	NA	NA	NA	-654241	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.005000	0.452736	
mm_54141.1	chr6	21858621	21858821	-	1	NA	NA	NA	-6206	NM_173007	269831	Mm.21950	NM_173007	ENSMUSG00000029669	Tspan12	9030619E17|AI426782|AI663988|AW111457|Tm4sf12	tetraspanin 12	protein-coding	0.015000	0.457711	
mm_170225.1	chr17	80809213	80809413	+	1	NA	NA	NA	-81288	NM_001290345	225028	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.005000	0.487562	
mm_120646.1	chr14	70530490	70530690	+	1	NA	NA	NA	-231	NM_145219	213469	Mm.41708	NM_145219	ENSMUSG00000033595	Lgi3	AI841179|AW049851	leucine-rich repeat LGI family, member 3	protein-coding	0.020000	0.502488	
mm_151391.1	chr19	56425589	56425789	+	1	NA	NA	NA	28560	NM_007611	12369	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.025000	0.587065	
mm_128325.1	chr15	38072308	38072508	-	1	NA	NA	NA	6446	NM_001112721	70790	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.015000	0.497512	-50(GGCTCTAAAGGG,-,0.00)
mm_1342.1	chr1	66175159	66175359	+	1	NA	NA	NA	-70	NM_008632	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.140000	0.786070	
mm_6740.1	chr1	83059273	83059473	-	1	NA	NA	NA	-1557	NM_027778	71386	Mm.389133	NM_027778	ENSMUSG00000101315	Krtap28-13	5530401N06Rik	keratin associated protein 28-13	protein-coding	0.040000	0.522388	-35(TGGTATATAAGG,-,0.00)
mm_144874.1	chr18	36751072	36751272	+	1	NA	NA	NA	6516	NM_011879	24010	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	0.030000	0.447761	-78(CTTTATATAGGC,+,0.00),-49(GCTTTTCAAGAG,+,0.00)
mm_99771.1	chr11	107025517	107025717	+	1	NA	NA	NA	-2606	NM_001163473	69066	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	OTTMUSG00000003581	RIKEN cDNA 1810010H24 gene	protein-coding	0.040000	0.567164	
mm_86883.1	chr10	22158300	22158500	+	1	NA	NA	NA	-209	NM_009016	19368	Mm.458004	NM_009016		Raet1a	RAE-1alpha|Rae1alpha|Raet1	retinoic acid early transcript 1, alpha	protein-coding	0.050000	0.572139	
mm_11320.1	chr2	30396352	30396552	+	1	NA	NA	NA	4198	NM_001290508	57170	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	0.030000	0.577114	
mm_22512.1	chr3	7617259	7617459	+	1	NA	NA	NA	-3599	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.005000	0.328358	
mm_102682.1	chr11	65269771	65269971	-	1	NA	NA	NA	118	NM_145136	214384	Mm.32257	NM_145136	ENSMUSG00000020542	Myocd	BSAC2A|Srfcp	myocardin	protein-coding	0.050000	0.631841	
mm_59633.1	chr7	28157456	28157656	+	1	NA	NA	NA	-12192	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.025000	0.452736	-77(TTCCTTAAATGG,-,0.00),-75(CCTTAAATGGAT,+,0.00)
mm_27168.1	chr3	33801589	33801789	-	1	NA	NA	NA	1506	NM_025978	67120	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	0.005000	0.427861	
mm_61627.1	chr7	80232804	80233004	+	1	NA	NA	NA	11	NM_178752	269952	Mm.187733	NM_178752	ENSMUSG00000050973	Gdpgp1	D330012F22Rik	GDP-D-glucose phosphorylase 1	protein-coding	0.090000	0.656716	
mm_12601.1	chr2	74679458	74679658	+	1	NA	NA	NA	0	NR_073086	15431	Mm.207763	NM_008273	ENSMUSG00000042499	Hoxd11	E230017H14Rik|Hox-4.6|Hox-5.4|Hox-5.5	homeobox D11	protein-coding	0.015000	0.432836	
mm_84046.1	chr9	58094227	58094427	-	1	NA	NA	NA	7898	NM_029212	382077	Mm.335193	NM_029212	ENSMUSG00000037716	Ccdc33	4930535E21Rik|Gm1117|Tzip1	coiled-coil domain containing 33	protein-coding	0.015000	0.552239	
mm_57599.1	chr6	127794688	127794888	-	1	NA	NA	NA	-6645	NR_106092	102466996		NR_106092	ENSMUSG00000104804	Mir7233	mmu-mir-7233	microRNA 7233	ncRNA	0.000000	0.378109	
mm_137988.1	chr17	33629328	33629528	+	1	NA	NA	NA	336	NM_026712	328801	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	0.030000	0.537313	
mm_10951.1	chr2	25617709	25617909	+	1	NA	NA	NA	-131	NM_029859	77058	Mm.478493	NM_029859	ENSMUSG00000026940	Ccdc183	4921530D09Rik|Cccd183|Kiaa1984	coiled-coil domain containing 183	protein-coding	0.010000	0.497512	
mm_94801.1	chr11	22990482	22990682	+	1	NA	NA	NA	-11	NM_009837	12464	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	0.105000	0.696517	
mm_151332.1	chr19	55894389	55894589	+	1	NA	NA	NA	-832	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.010000	0.398010	55(GGCTTTTAAAGT,-,0.00),56(GCTTTTAAAGTC,+,0.00)
mm_668.1	chr1	40462140	40462340	+	1	NA	NA	NA	-3312	NM_001161842	16182	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0.020000	0.502488	
mm_155119.1	chrX	48694973	48695173	+	1	NA	NA	NA	69	NM_173376	209003	Mm.32561	NM_173376	ENSMUSG00000031107	Rbmx2	2700089A17Rik|2810411A03Rik|CGI-79	RNA binding motif protein, X-linked 2	protein-coding	0.115000	0.626866	
mm_112319.1	chr12	115067915	115068115	-	1	NA	NA	NA	-554321	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.005000	0.492537	-34(GGGTTGAAAAGC,-,0.00)
mm_123493.1	chr14	66153323	66153523	-	1	NA	NA	NA	12463	NM_144803	110902	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	0.015000	0.502488	-74(GTTTTTATGGAA,+,0.00)
mm_38919.1	chr4	150001282	150001482	-	1	NA	NA	NA	1854	NM_001291004	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.025000	0.517413	
mm_145035.1	chr18	39353574	39353774	+	1	NA	NA	NA	133571	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.000000	0.278607	
mm_131700.1	chr16	20717669	20717869	+	1	NA	NA	NA	-57	NM_145632	245841	Mm.288730	NM_145632	ENSMUSG00000021018	Polr2h	-	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding	0.100000	0.651741	
mm_40550.1	chr5	58129303	58129503	+	1	NA	NA	NA	323595	NR_046190	78163	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA	0.010000	0.427861	
mm_33375.1	chr4	129515531	129515731	+	1	NA	NA	NA	2050	NM_010807	17357	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0.005000	0.477612	
mm_15561.1	chr2	158512659	158512859	+	1	NA	NA	NA	-37	NM_001145015	545481	Mm.125371	NM_001145015	ENSMUSG00000074625	Arhgap40	C20orf95|Gm14203|OTTMUSG00000015933	Rho GTPase activating protein 40	protein-coding	0.015000	0.601990	
mm_55279.1	chr6	54292643	54292843	-	1	NA	NA	NA	19921	NM_023543	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.005000	0.507463	
mm_88293.1	chr10	75273260	75273460	+	1	NA	NA	NA	-43517	NM_009630	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.015000	0.507463	
mm_72593.1	chr8	84414169	84414369	+	1	NA	NA	NA	-1095	NM_001252060	12286	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.080000	0.621891	
mm_53017.1	chr6	123283393	123283593	+	1	NA	NA	NA	6378	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.373134	
mm_118217.1	chr13	110280749	110280949	-	1	NA	NA	NA	-643	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding	0.030000	0.517413	
mm_102522.1	chr11	60913642	60913842	-	1	NA	NA	NA	50	NM_025294	24083	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	0.160000	0.741294	
mm_127714.1	chr15	103014280	103014480	+	1	NA	NA	NA	372	NM_175730	15424	Mm.103825	NM_175730	ENSMUSG00000022485	Hoxc5	AI181837|Hox-3.4|Hox-6.2	homeobox C5	protein-coding	0.095000	0.706468	
mm_78726.1	chr9	41580813	41581013	+	1	NA	NA	NA	-340	NR_015483	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.035000	0.592040	
mm_45446.1	chr5	67427704	67427904	-	1	NA	NA	NA	-5	NM_001164806	666938	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.105000	0.696517	
mm_129621.1	chr15	80083251	80083451	-	1	NA	NA	NA	55	NM_013762	27367	Mm.290771	NM_013762	ENSMUSG00000060036	Rpl3	F2|J1	ribosomal protein L3	protein-coding	0.085000	0.611940	-35(GGCTTTATATAG,-,0.00),-33(CTTTATATAGCC,+,0.00)
mm_96548.1	chr11	68864080	68864280	+	1	NA	NA	NA	-11049	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.020000	0.452736	
mm_165460.1	chr2	158666319	158666519	+	1	NA	NA	NA	-314	NM_153089	228852	Mm.150540	NM_153089	ENSMUSG00000037754	Ppp1r16b	ANKRD4|C130078N17Rik|TIMAP|Wdt4	protein phosphatase 1, regulatory (inhibitor) subunit 16B	protein-coding	0.015000	0.487562	
mm_133336.1	chr16	78930849	78931049	+	1	NA	NA	NA	1	NM_139134	246048	Mm.77895	NM_139134	ENSMUSG00000022860	Chodl	3110074E07Rik|MT75|PRED12	chondrolectin	protein-coding	0.020000	0.542289	-33(GCATATATAAGA,-,0.00)
mm_121033.1	chr14	79769831	79770031	+	1	NA	NA	NA	1381	NM_001042726	18530	Mm.390715	NM_021543	ENSMUSG00000036422	Pcdh8	1700080P15Rik|Papc	protocadherin 8	protein-coding	0.140000	0.746269	
mm_45892.1	chr5	88564769	88564969	-	1	NA	NA	NA	-171	NM_001289774	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.115000	0.771144	
mm_60481.1	chr7	44478291	44478491	+	1	NA	NA	NA	-6126	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.472637	
mm_159987.1	chr6	114458421	114458621	+	1	NA	NA	NA	-1	NM_001317124	15465	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.020000	0.537313	
mm_3976.1	chr1	164248937	164249137	+	1	NA	NA	NA	-9	NM_054087	116914	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA	solute carrier family 19 (thiamine transporter), member 2	protein-coding	0.115000	0.766169	
mm_145835.1	chr18	65442272	65442472	+	1	NA	NA	NA	11375	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.462687	
mm_75944.1	chr8	71569368	71569568	-	1	NA	NA	NA	541	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.045000	0.616915	
mm_63305.1	chr7	126847814	126848014	+	1	NA	NA	NA	361	NM_010069	13446	Mm.266301	NM_010069	ENSMUSG00000052301	Doc2a	-	double C2, alpha	protein-coding	0.170000	0.800995	
mm_132658.1	chr16	41666215	41666415	+	1	NA	NA	NA	132973	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.010000	0.398010	
mm_79617.1	chr9	58652333	58652533	+	1	NA	NA	NA	70193	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.015000	0.383085	
mm_33959.1	chr4	137507148	137507348	+	1	NA	NA	NA	-31038	NR_105985	102465616		NR_105985	ENSMUSG00000099134	Mir7018	Gm27606|mmu-mir-7018	microRNA 7018	ncRNA	0.015000	0.467662	
mm_132340.1	chr16	33829678	33829878	+	1	NA	NA	NA	113	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.125000	0.731343	
mm_9704.1	chr1	179381610	179381810	-	1	NA	NA	NA	136293	NM_027188	69726	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.005000	0.388060	
mm_51814.1	chr6	88902300	88902500	+	1	NA	NA	NA	149	NM_011906	24100	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.115000	0.646766	
mm_3381.1	chr1	139454757	139454957	+	1	NA	NA	NA	84	NM_009791	12316	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	asp (abnormal spindle)-like, microcephaly associated (Drosophila)	protein-coding	0.075000	0.601990	
mm_76884.1	chr8	105634763	105634963	-	1	NA	NA	NA	-1675	NM_181322	13018	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0.005000	0.472637	-30(TGTTTTAAAAGG,-,0.00),-29(GTTTTAAAAGGT,+,0.00)
mm_40755.1	chr5	66890227	66890427	+	1	NA	NA	NA	-78089	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.070000	0.577114	
mm_102735.1	chr11	67250848	67251048	-	1	NA	NA	NA	13136	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.020000	0.462687	
mm_77126.1	chr8	111337653	111337853	-	1	NA	NA	NA	452	NM_001310613	74568	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0.030000	0.507463	
mm_12471.1	chr2	71453247	71453447	+	1	NA	NA	NA	9	NM_025633	66559	Mm.152796	NM_025633	ENSMUSG00000041921	Metap1d	2310066F24Rik|3110033D18Rik|AV117938|MAP 1D|Map1d|MetAP 1D|Metapl1	methionyl aminopeptidase type 1D (mitochondrial)	protein-coding	0.135000	0.696517	
mm_7967.1	chr1	134040273	134040473	-	1	NA	NA	NA	2858	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.020000	0.567164	
mm_21849.1	chr2	165861507	165861707	-	1	NA	NA	NA	-3434	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.050000	0.557214	
mm_6483.1	chr1	74096757	74096957	-	1	NA	NA	NA	27590	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.015000	0.601990	
mm_27320.1	chr3	50366902	50367102	-	1	NA	NA	NA	76611	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.437811	34(CCCTTAATAACC,+,0.00)
mm_65117.1	chr7	19359383	19359583	-	1	NA	NA	NA	0	NM_145822	70333	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	0.065000	0.631841	
mm_133933.1	chr16	3872169	3872369	-	1	NA	NA	NA	105	NM_001033159	71063	Mm.379190	NM_001033159	ENSMUSG00000039789	Zfp597	4933407K12Rik|AI462383|AI666357	zinc finger protein 597	protein-coding	0.065000	0.606965	
mm_26471.1	chr3	144570278	144570478	+	1	NA	NA	NA	-49	NM_053102	93684	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.070000	0.577114	
mm_56798.1	chr6	116656235	116656435	-	1	NA	NA	NA	5651	NM_001166580	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.000000	0.412935	
mm_38490.1	chr4	140835642	140835842	-	1	NA	NA	NA	10036	NM_011059	18599	Mm.20854	NM_011059	ENSMUSG00000025329	Padi1	AV236283|Pdi1	peptidyl arginine deiminase, type I	protein-coding	0.040000	0.532338	
mm_143146.1	chr17	57222162	57222362	-	1	NA	NA	NA	-5034	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.015000	0.532338	
mm_170583.1	chr1	9574432	9574632	+	1	NA	NA	NA	26486	NR_027664	76187	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8	alcohol dehydrogenase, iron containing, 1	protein-coding	0.015000	0.477612	
mm_44975.1	chr5	36825538	36825738	-	1	NA	NA	NA	5011	NM_008550	17160	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0.025000	0.577114	
mm_136822.1	chr17	12420831	12421031	+	1	NA	NA	NA	42322	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.025000	0.557214	-33(GCATTTAAGGAG,+,0.00)
mm_170425.1	chr18	72539109	72539309	+	1	NA	NA	NA	-188140	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.015000	0.383085	
mm_16711.1	chr2	7085598	7085798	-	1	NA	NA	NA	-4396	NM_001160292	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.000000	0.348259	
mm_62915.1	chr7	117998432	117998632	+	1	NA	NA	NA	117615	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0.020000	0.368159	
mm_33337.1	chr4	129231697	129231897	+	1	NA	NA	NA	-3886	NM_001285866	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.005000	0.606965	37(GGCTCTAAGAAG,-,0.00)
mm_54193.1	chr6	24527466	24527666	-	1	NA	NA	NA	119	NM_001311068	68202	Mm.275780	NM_026614	ENSMUSG00000023089	Ndufa5	2900002J19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5	protein-coding	0.080000	0.631841	
mm_147701.1	chr18	60808205	60808405	-	1	NA	NA	NA	-3771	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.015000	0.552239	
mm_3760.1	chr1	156052206	156052406	+	1	NA	NA	NA	11445	NM_022329	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.015000	0.378109	
mm_159680.1	chr5	3657048	3657248	+	1	NA	NA	NA	144	NM_029154	75010	Mm.85064	NM_029141	ENSMUSG00000014529	Tmbim7	4930403J02Rik|4930500J03Rik|4930511M11Rik|Lfg5|Lgf5|Tmbim1b	transmembrane BAX inhibitor motif containing 7	protein-coding	0.005000	0.452736	
mm_15395.1	chr2	156721243	156721443	+	1	NA	NA	NA	64	NM_001042487	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.125000	0.726368	
mm_156905.1	chrX	169036589	169036789	+	1	NA	NA	NA	78	NR_109847	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.035000	0.636816	
mm_3154.1	chr1	135154564	135154764	+	1	NA	NA	NA	7830	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.025000	0.542289	
mm_34255.1	chr4	141368048	141368248	+	1	NA	NA	NA	-44	NM_001085513	277743	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	0.145000	0.781095	
mm_70035.1	chr7	142577271	142577471	-	1	NA	NA	NA	-224	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.010000	0.522388	
mm_103637.1	chr11	78959810	78960010	-	1	NA	NA	NA	25014	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.005000	0.547264	
mm_167819.1	chr9	124312570	124312770	-	1	NA	NA	NA	24	NM_001243118	630836	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0.045000	0.597015	
mm_78837.1	chr9	44254946	44255146	+	1	NA	NA	NA	-3582	NM_133226	170761	Mm.29872	NM_133226	ENSMUSG00000032105	Pdzd3	NaPi-Cap2|Pdzk2	PDZ domain containing 3	protein-coding	0.010000	0.452736	
mm_92961.1	chr10	85957648	85957848	-	1	NA	NA	NA	45	NM_145422	28088	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	0.085000	0.601990	
mm_141732.1	chr17	34119229	34119429	-	1	NA	NA	NA	571	NR_037970	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.115000	0.686567	
mm_81295.1	chr9	108337438	108337638	+	1	NA	NA	NA	-1542	NM_008160	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.000000	0.268657	
mm_98772.1	chr11	96742857	96743057	+	1	NA	NA	NA	34598	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.010000	0.358209	
mm_1449.1	chr1	67230463	67230663	+	1	NA	NA	NA	107536	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.363184	
mm_24913.1	chr3	96247752	96247952	+	1	NA	NA	NA	1152	NM_054045	97114	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	0.010000	0.368159	
mm_168923.1	chr12	61705513	61705713	-	1	NA	NA	NA	182446	NM_001310586	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.025000	0.427861	
mm_98184.1	chr11	87793311	87793511	+	1	NA	NA	NA	-373	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.015000	0.527363	
mm_38864.1	chr4	149446172	149446372	-	1	NA	NA	NA	8696	NM_022020	63954	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	0.015000	0.487562	
mm_97613.1	chr11	78952692	78952892	+	1	NA	NA	NA	27501	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.055000	0.592040	
mm_3142.1	chr1	135144241	135144441	+	1	NA	NA	NA	-2493	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.005000	0.487562	
mm_160815.1	chr11	22956425	22956625	-	1	NA	NA	NA	-15480	NM_011663	22183	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.030000	0.522388	
mm_47909.1	chr5	134946341	134946541	-	1	NA	NA	NA	493	NM_009903	12740	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	0.060000	0.606965	
mm_134919.1	chr16	30359148	30359348	-	1	NA	NA	NA	29282	NM_001128094	224088	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0.000000	0.402985	
mm_95469.1	chr11	50611197	50611397	+	1	NA	NA	NA	9212	NM_175643	216725	Mm.110597	NM_175643	ENSMUSG00000036545	Adamts2	ADAM-TS 2|ADAM-TS2|ADAMTS-2|PC I-NP|PCINP|pNPI	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2	protein-coding	0.010000	0.502488	
mm_14655.1	chr2	136943945	136944145	+	1	NA	NA	NA	44694	NM_001038641	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.000000	0.373134	
mm_21338.1	chr2	157107360	157107560	-	1	NA	NA	NA	20405	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.015000	0.437811	
mm_114133.1	chr13	55212635	55212835	+	1	NA	NA	NA	2953	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.095000	0.646766	
mm_75451.1	chr8	47675503	47675703	-	1	NA	NA	NA	-444	NM_023503	69260	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.130000	0.751244	
mm_118193.1	chr13	107823451	107823651	-	1	NA	NA	NA	-62464	NR_029759	723929		NR_029759	ENSMUSG00000065425	Mir325	Mirn325|mmu-mir-325	microRNA 325	ncRNA	0.000000	0.318408	
mm_47261.1	chr5	121836163	121836363	-	1	NA	NA	NA	-159	NM_001306126	16923	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.040000	0.656716	
mm_62853.1	chr7	114416612	114416812	+	1	NA	NA	NA	1458	NM_011055	18576	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0.020000	0.472637	
mm_65524.1	chr7	25786900	25787100	-	1	NA	NA	NA	1733	NM_001190974	26362	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.010000	0.537313	
mm_43013.1	chr5	123907092	123907292	+	1	NA	NA	NA	-83	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.120000	0.691542	
mm_166401.1	chr5	136015095	136015295	+	1	NA	NA	NA	20395	NM_001256098	74198	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	0.030000	0.616915	
mm_29944.1	chr3	132906660	132906860	-	1	NA	NA	NA	-28164	NR_102298	101243624	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	0.025000	0.442786	
mm_90351.1	chr10	127165072	127165272	+	1	NA	NA	NA	16	NM_001244617	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.130000	0.746269	
mm_89715.1	chr10	98877969	98878169	+	1	NA	NA	NA	-37083	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.015000	0.442786	
mm_59646.1	chr7	28162685	28162885	+	1	NA	NA	NA	-6963	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.030000	0.567164	
mm_3011.1	chr1	133363473	133363673	+	1	NA	NA	NA	1	NM_175443	214253	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	0.095000	0.671642	
mm_163662.1	chr13	75906763	75906963	+	1	NA	NA	NA	36961	NM_028493	73296	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	0.010000	0.388060	
mm_62367.1	chr7	100607642	100607842	+	1	NA	NA	NA	156	NM_001163663	19346	Mm.28650	NM_024287	ENSMUSG00000030704	Rab6a	2610028L11Rik|AA419671|Rab6	RAB6A, member RAS oncogene family	protein-coding	0.160000	0.746269	
mm_102726.1	chr11	67240684	67240884	-	1	NA	NA	NA	2972	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.030000	0.517413	
mm_122077.1	chr14	30605071	30605271	-	1	NA	NA	NA	5139	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.015000	0.552239	
mm_71959.1	chr8	70527705	70527905	+	1	NA	NA	NA	-41	NM_001199631	14232	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|Fkbp38	FK506 binding protein 8	protein-coding	0.125000	0.761194	
mm_9636.1	chr1	177033608	177033808	-	1	NA	NA	NA	-197575	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0.000000	0.457711	
mm_45320.1	chr5	65454656	65454856	-	1	NA	NA	NA	-18914	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.020000	0.502488	
mm_112641.1	chr13	16016234	16016434	+	1	NA	NA	NA	4483	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.000000	0.487562	
mm_4080.1	chr1	166379215	166379415	+	1	NA	NA	NA	148	NM_030245	27878	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0.170000	0.706468	
mm_9668.1	chr1	178276544	178276744	-	1	NA	NA	NA	-42509	NM_025511	66359	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0.045000	0.626866	
mm_75432.1	chr8	47289236	47289436	-	1	NA	NA	NA	66	NM_001286376	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.120000	0.731343	
mm_145517.1	chr18	60443211	60443411	+	1	NA	NA	NA	58672	NM_134133	106878	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.010000	0.432836	
mm_124700.1	chr15	6445270	6445470	+	1	NA	NA	NA	37	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.005000	0.547264	
mm_79558.1	chr9	58021857	58022057	+	1	NA	NA	NA	7005	NM_019779	13070	Mm.302865	NM_019779	ENSMUSG00000032323	Cyp11a1	Cyp11a|Cypxia1|D9Ertd411e|P450scc|Scc|cscc	cytochrome P450, family 11, subfamily a, polypeptide 1	protein-coding	0.010000	0.477612	33(CTCCTTAAAGGG,-,0.00),35(CCTTAAAGGGTG,+,0.00)
mm_37452.1	chr4	123411807	123412007	-	1	NA	NA	NA	4	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.135000	0.766169	
mm_39043.1	chr4	152418704	152418904	-	1	NA	NA	NA	30051	NM_001252655	16498	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	0.030000	0.651741	
mm_38699.1	chr4	145214658	145214858	-	1	NA	NA	NA	-19753	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.010000	0.487562	
mm_91401.1	chr10	30803231	30803431	-	1	NA	NA	NA	-224	NM_172495	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.115000	0.736318	
mm_40284.1	chr5	43233388	43233588	+	1	NA	NA	NA	25	NM_001177379	231207	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.145000	0.771144	
mm_23821.1	chr3	80800429	80800629	+	1	NA	NA	NA	2262	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.045000	0.611940	
mm_108632.1	chr12	85686621	85686821	+	1	NA	NA	NA	1	NM_016767	53314	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.030000	0.597015	
mm_51021.1	chr6	65042754	65042954	+	1	NA	NA	NA	187	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.175000	0.786070	
mm_164123.1	chr15	38514728	38514928	-	1	NA	NA	NA	4438	NM_001301688	54375	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.000000	0.323383	
mm_87597.1	chr10	57645748	57645948	+	1	NA	NA	NA	-21	NM_001039052	18768	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.010000	0.547264	
mm_91582.1	chr10	40227720	40227920	-	1	NA	NA	NA	19159	NM_001042556	67239	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	0.010000	0.502488	
mm_10210.1	chr2	5603458	5603658	+	1	NA	NA	NA	72488	NM_001290376	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.030000	0.527363	
mm_28075.1	chr3	84305321	84305521	-	1	NA	NA	NA	-646	NM_001271726	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.060000	0.592040	-83(GCCCAGAAAAGC,-,0.00)
mm_122138.1	chr14	31163830	31164030	-	1	NA	NA	NA	4711	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.030000	0.547264	
mm_163175.1	chr11	87796226	87796426	+	1	NA	NA	NA	2542	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.035000	0.582090	
mm_118603.1	chr14	20794112	20794312	+	1	NA	NA	NA	-124	NM_178597	12325	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	0.115000	0.825871	
mm_107777.1	chr12	59188352	59188552	+	1	NA	NA	NA	31031	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.015000	0.577114	
mm_47161.1	chr5	120711503	120711703	-	1	NA	NA	NA	66	NM_008052	14357	Mm.1645	NM_008052	ENSMUSG00000029603	Dtx1	Fxit1|mKIAA4160	deltex 1, E3 ubiquitin ligase	protein-coding	0.125000	0.726368	
mm_167075.1	chr7	100658309	100658509	+	1	NA	NA	NA	47	NM_001163185	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.050000	0.631841	
mm_151193.1	chr19	53533716	53533916	+	1	NA	NA	NA	4498	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.015000	0.472637	
mm_44707.1	chr5	30822833	30823033	-	1	NA	NA	NA	8292	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.005000	0.482587	
mm_168044.1	chrY	90811131	90811331	+	1	NA	NA	NA	25789	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.005000	0.417910	
mm_94626.1	chr11	16804319	16804519	+	1	NA	NA	NA	52216	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.005000	0.487562	
mm_119467.1	chr14	47287059	47287259	+	1	NA	NA	NA	10016	NM_080843	67296	Mm.23957	NM_080843	ENSMUSG00000048379	Socs4	3110032M18Rik|A730004F22Rik|AI427843|AU015727|AU015859|Socs7	suppressor of cytokine signaling 4	protein-coding	0.015000	0.497512	
mm_3711.1	chr1	153908303	153908503	+	1	NA	NA	NA	8474	NM_008131	14645	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.020000	0.477612	
mm_125346.1	chr15	39197609	39197809	+	1	NA	NA	NA	-577	NM_001256382	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.185000	0.840796	
mm_4032.1	chr1	165773830	165774030	+	1	NA	NA	NA	10150	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.015000	0.487562	
mm_113883.1	chr13	49013659	49013859	+	1	NA	NA	NA	45647	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.010000	0.527363	
mm_167645.1	chr9	64830227	64830427	+	1	NA	NA	NA	19316	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.015000	0.442786	
mm_136595.1	chr17	5057868	5058068	+	1	NA	NA	NA	62894	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.000000	0.308458	
mm_104755.1	chr11	98463727	98463927	-	1	NA	NA	NA	16993	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.025000	0.537313	
mm_76484.1	chr8	85559337	85559537	-	1	NA	NA	NA	-4166	NM_019794	56445	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0.005000	0.462687	
mm_164221.1	chr15	85017034	85017234	+	1	NA	NA	NA	-7	NM_023478	22270	Mm.46214	NM_023478	ENSMUSG00000022435	Upk3a	1110017C07Rik|UP3a|UPIII|Upk3	uroplakin 3A	protein-coding	0.060000	0.621891	
mm_110388.1	chr12	40555019	40555219	-	1	NA	NA	NA	109066	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.000000	0.452736	-37(GCATTAAAAGTC,+,0.00)
mm_127443.1	chr15	101270382	101270582	+	1	NA	NA	NA	3636	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.050000	0.611940	
mm_130308.1	chr15	97029176	97029376	-	1	NA	NA	NA	26680	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.005000	0.388060	
mm_99728.1	chr11	106300751	106300951	+	1	NA	NA	NA	1045	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.030000	0.562189	
mm_169179.1	chr13	65812989	65813189	-	1	NA	NA	NA	-300364	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.020000	0.527363	
mm_87933.1	chr10	62651619	62651819	+	1	NA	NA	NA	-521	NM_053183	94213	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	0.075000	0.626866	
mm_24346.1	chr3	89831268	89831468	+	1	NA	NA	NA	-2	NM_172530	214547	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.120000	0.751244	
mm_21031.1	chr2	152464506	152464706	-	1	NA	NA	NA	14	NM_001037933	629114	Mm.389372	NM_001037933	ENSMUSG00000074681	Defb23	EG629114	defensin beta 23	protein-coding	0.005000	0.522388	
mm_71695.1	chr8	61487633	61487833	+	1	NA	NA	NA	-1	NM_145595	234309	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.025000	0.467662	
mm_83771.1	chr9	52048697	52048897	-	1	NA	NA	NA	-92	NR_023357	629557	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.150000	0.716418	
mm_148225.1	chr18	80345763	80345963	-	1	NA	NA	NA	18391	NM_001190373	240444	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.010000	0.437811	
mm_149687.1	chr19	20601866	20602066	+	1	NA	NA	NA	-16	NM_013467	11668	Mm.250866	NM_013467	ENSMUSG00000053279	Aldh1a1	Ahd-2|Ahd2|Aldh1|Aldh1a2|E1|Raldh1	aldehyde dehydrogenase family 1, subfamily A1	protein-coding	0.015000	0.527363	
mm_129477.1	chr15	78718467	78718667	-	1	NA	NA	NA	-454	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0.140000	0.751244	
mm_124993.1	chr15	22548973	22549173	+	1	NA	NA	NA	165911	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding	0.010000	0.482587	
mm_149944.1	chr19	27322425	27322625	+	1	NA	NA	NA	-94	NM_183179	240595	Mm.269759	NM_183179	ENSMUSG00000047298	Kcnv2	KV11.1	potassium channel, subfamily V, member 2	protein-coding	0.010000	0.482587	
mm_46272.1	chr5	99978840	99979040	-	1	NA	NA	NA	-2	NM_001077267	11991	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.130000	0.691542	25(CGCCATTAAAGC,-,0.00)
mm_170712.1	chr2	144149206	144149406	+	1	NA	NA	NA	39984	NR_136884	433481	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.080000	0.552239	
mm_59705.1	chr7	28693905	28694105	+	1	NA	NA	NA	861	NM_001163702	233040	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	0.005000	0.437811	
mm_16276.1	chr2	173737478	173737678	+	1	NA	NA	NA	7	NM_019806	56491	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.165000	0.771144	
mm_123115.1	chr14	55944453	55944653	-	1	NA	NA	NA	122	NM_010780	17228	Mm.1252	NM_010780	ENSMUSG00000022225	Cma1	MMCP-5|Mcp-5|Mcp5|Mcpt5	chymase 1, mast cell	protein-coding	0.015000	0.567164	
mm_121313.1	chr14	106881674	106881874	+	1	NA	NA	NA	-395254	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.000000	0.393035	
mm_119000.1	chr14	28649607	28649807	+	1	NA	NA	NA	138302	NM_001256224	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.000000	0.452736	
mm_28162.1	chr3	87795114	87795314	-	1	NA	NA	NA	-52	NM_001033124	18211	Mm.80682	NM_001033124	ENSMUSG00000028072	Ntrk1	C80751|Tkr|TrkA|trk	neurotrophic tyrosine kinase, receptor, type 1	protein-coding	0.145000	0.781095	
mm_3607.1	chr1	151718521	151718721	+	1	NA	NA	NA	-36753	NM_001311165	66967	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0.015000	0.477612	
mm_100292.1	chr11	117813725	117813925	+	1	NA	NA	NA	4158	NM_009304	20973	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0.010000	0.532338	
mm_109444.1	chr12	110850215	110850415	+	1	NA	NA	NA	36	NM_028365	72805	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0.130000	0.716418	
mm_160794.1	chr11	3914567	3914767	-	1	NA	NA	NA	-3	NM_153142	103710	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0.055000	0.572139	
mm_37724.1	chr4	129558293	129558493	-	1	NA	NA	NA	-21	NM_010693	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.030000	0.601990	
mm_33376.1	chr4	129515587	129515787	+	1	NA	NA	NA	2106	NM_010807	17357	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0.000000	0.477612	
mm_78630.1	chr9	38742371	38742571	+	1	NA	NA	NA	-10325	NM_146787	258783	Mm.131149	NM_146787	ENSMUSG00000061039	Olfr920	MOR165-6	olfactory receptor 920	protein-coding	0.000000	0.273632	
mm_47674.1	chr5	128432981	128433181	-	1	NA	NA	NA	-4	NM_172885	243274	Mm.447698	NM_172885	ENSMUSG00000034310	Tmem132d	C630028F04Rik	transmembrane protein 132D	protein-coding	0.075000	0.631841	-41(GGGCTTAAAAAG,-,0.00),-39(GCTTAAAAAGAG,+,0.00)
mm_120496.1	chr14	65981287	65981487	+	1	NA	NA	NA	12904	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.015000	0.527363	
mm_126805.1	chr15	87625122	87625322	+	1	NA	NA	NA	-8	NM_134096	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.150000	0.781095	
mm_53661.1	chr6	141454643	141454843	+	1	NA	NA	NA	-69643	NM_001177772	58807	Mm.284495	NM_021471	ENSMUSG00000030235	Slco1c1	OATP-14|OATP-F|Oatp2|Oatpf|Slc21a14	solute carrier organic anion transporter family, member 1c1	protein-coding	0.015000	0.373134	
mm_6392.1	chr1	72858376	72858576	-	1	NA	NA	NA	16389	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.040000	0.572139	
mm_27211.1	chr3	35932483	35932683	-	1	NA	NA	NA	-249	NM_001205362	114893	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.165000	0.835821	
mm_39889.1	chr5	31116625	31116825	+	1	NA	NA	NA	113	NM_021447	58522	Mm.143796	NM_021447	ENSMUSG00000062077	Trim54	4930486E09Rik|4930566I02Rik|MURF|MURF-3|MuRF3|Rnf30	tripartite motif-containing 54	protein-coding	0.010000	0.542289	
mm_108999.1	chr12	103062279	103062479	+	1	NA	NA	NA	113520	NM_001081017	217843	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	0.005000	0.368159	
mm_141430.1	chr17	29467836	29468036	-	1	NA	NA	NA	-23109	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.030000	0.547264	
mm_7688.1	chr1	128607880	128608080	-	1	NA	NA	NA	-15681	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.000000	0.422886	
mm_141312.1	chr17	28358596	28358796	-	1	NA	NA	NA	6447	NM_021478	22157	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.030000	0.582090	
mm_58375.1	chr6	148992321	148992521	-	1	NA	NA	NA	-45989	NM_019643	56306	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Tera	family with sequence similarity 60, member A	protein-coding	0.000000	0.363184	
mm_61324.1	chr7	68226485	68226685	+	1	NA	NA	NA	37648	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.015000	0.442786	
mm_150461.1	chr19	38264742	38264942	+	1	NA	NA	NA	60	NM_020278	56839	Mm.298251	NM_020278	ENSMUSG00000067242	Lgi1	BB130740	leucine-rich repeat LGI family, member 1	protein-coding	0.005000	0.422886	
mm_35346.1	chr4	32250256	32250456	-	1	NA	NA	NA	-167079	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.010000	0.517413	
mm_75859.1	chr8	70700311	70700511	-	1	NA	NA	NA	2672	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.045000	0.482587	
mm_6110.1	chr1	64078881	64079081	-	1	NA	NA	NA	-36480	NR_105864	102466760		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.055000	0.611940	
mm_81028.1	chr9	104569516	104569716	+	1	NA	NA	NA	-172	NM_028719	74020	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	0.065000	0.661692	
mm_30209.1	chr3	144827268	144827468	-	1	NA	NA	NA	-7874	NM_030601	80797	Mm.20897	NM_030601	ENSMUSG00000028262	Clca3a2	Clca2	chloride channel accessory 3A2	protein-coding	0.025000	0.527363	
mm_121310.1	chr14	106106124	106106324	+	1	NA	NA	NA	26	NR_073203	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0.055000	0.651741	-31(CCTTTTATAGCG,+,0.00)
mm_142912.1	chr17	53539296	53539496	-	1	NA	NA	NA	55	NM_173449	110332	Mm.444633	NM_173449	ENSMUSG00000044957	Pp2d1	4921523A10Rik	protein phosphatase 2C-like domain containing 1	protein-coding	0.000000	0.487562	
mm_160914.1	chr11	83176107	83176307	+	1	NA	NA	NA	1021	NM_001302559	20558	Mm.38192	NM_011410	ENSMUSG00000000204	Slfn4	AI450778	schlafen 4	protein-coding	0.010000	0.477612	
mm_163766.1	chr13	120017798	120017998	+	1	NA	NA	NA	34306	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.000000	0.407960	
mm_49624.1	chr6	30803823	30804023	+	1	NA	NA	NA	62624	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.457711	
mm_171920.1	chr5	5782650	5782850	-	1	NA	NA	NA	-33433	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.055000	0.522388	51(CTCTCTATGAGG,-,0.00)
mm_117485.1	chr13	77438935	77439135	-	1	NA	NA	NA	-269655	NM_001163420	68675	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding	0.015000	0.343284	
mm_99987.1	chr11	114717518	114717718	+	1	NA	NA	NA	-9794	NM_001034878	432611	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728	dynein, axonemal, intermediate chain 2	protein-coding	0.000000	0.318408	
mm_58254.1	chr6	145075947	145076147	-	1	NA	NA	NA	110	NM_007532	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.080000	0.646766	
mm_91089.1	chr10	19015263	19015463	-	1	NA	NA	NA	47	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.095000	0.636816	
mm_96121.1	chr11	60775032	60775232	+	1	NA	NA	NA	2233	NM_009410	21975	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0.000000	0.487562	
mm_141204.1	chr17	27039441	27039641	-	1	NA	NA	NA	10282	NM_027544	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.005000	0.606965	
mm_172149.1	chr6	3820799	3820999	-	1	NA	NA	NA	-56186	NM_007588	12311	Mm.4642	NM_007588	ENSMUSG00000023964	Calcr	Clr	calcitonin receptor	protein-coding	0.025000	0.542289	
mm_138064.1	chr17	33931081	33931281	+	1	NA	NA	NA	1287	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.030000	0.597015	
mm_154627.1	chrX	7728486	7728686	+	1	NA	NA	NA	15	NM_138602	54637	Mm.28850	NM_138602	ENSMUSG00000031149	Praf2	AA986329|C78013|DXImx39e|JM4|Sfc20	PRA1 domain family 2	protein-coding	0.080000	0.631841	
mm_164092.1	chr15	9663577	9663777	+	1	NA	NA	NA	85191	NM_177123	320277	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0.030000	0.442786	-33(CCCCATAAAAAC,-,0.00),-31(CCATAAAAACCC,+,0.00)
mm_79143.1	chr9	47693171	47693371	+	1	NA	NA	NA	124937	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.020000	0.363184	-36(CTCTTTAAAGCT,+,0.00)
mm_141536.1	chr17	31855692	31855892	-	1	NA	NA	NA	0	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.185000	0.845771	
mm_167264.1	chr8	27945228	27945428	+	1	NA	NA	NA	139525	NR_033590	666422	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	0.015000	0.442786	
mm_86233.1	chr9	120571304	120571504	-	1	NA	NA	NA	-113	NM_025974	67115	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	0.085000	0.577114	
mm_148527.1	chr19	4510421	4510621	+	1	NA	NA	NA	49	NM_001162946	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.070000	0.651741	
mm_9067.1	chr1	168155685	168155885	-	1	NA	NA	NA	276384	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.015000	0.482587	
mm_66649.1	chr7	45694288	45694488	-	1	NA	NA	NA	14	NM_001271578	56546	Mm.56914	NM_019934	ENSMUSG00000040364	Sec1	Fut10|Fut3	secretory blood group 1	protein-coding	0.075000	0.641791	
mm_54855.1	chr6	42593354	42593554	-	1	NA	NA	NA	3918	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.030000	0.467662	
mm_144970.1	chr18	37826626	37826826	+	1	NA	NA	NA	7180	NM_033583	93708	Mm.247203	NM_033583	ENSMUSG00000102543	Pcdhgc5	-	protocadherin gamma subfamily C, 5	protein-coding	0.010000	0.547264	9(GCCCCTAAAAGG,-,0.00)
mm_139135.1	chr17	47509253	47509453	+	1	NA	NA	NA	4302	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.447761	-1(GCCTTTTTAAGT,-,0.00)
mm_99603.1	chr11	104550688	104550888	+	1	NA	NA	NA	125	NM_010858	17896	Mm.390355	NM_010858	ENSMUSG00000061086	Myl4	ALC1|AMLC|ELC|ELC1a|GT1|MLC1a|Myla	myosin, light polypeptide 4	protein-coding	0.055000	0.577114	
mm_106105.1	chr11	116292376	116292576	-	1	NA	NA	NA	11537	NM_010254	14428	Mm.57149	NM_010254	ENSMUSG00000020793	Galr2	mGalR	galanin receptor 2	protein-coding	0.035000	0.606965	
mm_3057.1	chr1	134066315	134066515	+	1	NA	NA	NA	12740	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.010000	0.507463	
mm_116175.1	chr13	30820538	30820738	-	1	NA	NA	NA	71405	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.015000	0.477612	
mm_66744.1	chr7	46711963	46712163	-	1	NA	NA	NA	-1412	NM_030233	78935	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.015000	0.457711	
mm_135629.1	chr16	52301313	52301513	-	1	NA	NA	NA	151668	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.373134	
mm_43851.1	chr5	143363805	143364005	+	1	NA	NA	NA	-3	NM_133355	170935	Mm.197460	NM_133355	ENSMUSG00000010825	Grid2ip	-	glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1	protein-coding	0.045000	0.676617	
mm_13680.1	chr2	116900108	116900308	+	1	NA	NA	NA	56	NR_040335	320975	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.035000	0.577114	
mm_136321.1	chr16	91964540	91964740	-	1	NA	NA	NA	-33010	NM_138597	28080	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.015000	0.517413	
mm_45732.1	chr5	86373304	86373504	-	1	NA	NA	NA	-17	NM_145561	231382	Mm.240139	NM_145561	ENSMUSG00000061259	Tmprss11d	AST|AsP|BC020151	transmembrane protease, serine 11d	protein-coding	0.005000	0.398010	
mm_76131.1	chr8	80880367	80880567	-	1	NA	NA	NA	12	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.090000	0.706468	
mm_95718.1	chr11	54522757	54522957	+	1	NA	NA	NA	12	NM_001252496	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.125000	0.671642	
mm_99872.1	chr11	109399400	109399600	+	1	NA	NA	NA	-26446	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.020000	0.417910	
mm_54704.1	chr6	39603601	39603801	-	1	NA	NA	NA	11118	NM_026612	68198	Mm.29415	NM_026612	ENSMUSG00000002416	Ndufb2	1810011O01Rik|8kDa|AGGG|AI325567|CI-AGGG	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2	protein-coding	0.000000	0.358209	
mm_1955.1	chr1	86359472	86359672	+	1	NA	NA	NA	-2	NR_015507	319336	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	ENSMUSG00000073627	RIKEN cDNA C130036L24 gene	ncRNA	0.105000	0.696517	-43(GCTCTTAGGGGC,+,0.00)
mm_143224.1	chr17	63304082	63304282	-	1	NA	NA	NA	8791	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.010000	0.467662	51(TCTTTAAGAGAG,+,0.00)
mm_155398.1	chrX	72987259	72987459	+	1	NA	NA	NA	20	NM_001109043	22673	Mm.1161	NM_009549	ENSMUSG00000031351	Zfp185	P1|Znf185	zinc finger protein 185	protein-coding	0.110000	0.731343	
mm_68582.1	chr7	115953250	115953450	-	1	NA	NA	NA	41736	NM_011445	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.005000	0.437811	
mm_17995.1	chr2	38166005	38166205	-	1	NA	NA	NA	121279	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.020000	0.427861	
mm_55993.1	chr6	86138334	86138534	-	1	NA	NA	NA	-56793	NM_031199	21802	Mm.137222	NM_031199	ENSMUSG00000029999	Tgfa	wa-1|wa1	transforming growth factor alpha	protein-coding	0.005000	0.497512	
mm_78926.1	chr9	45055118	45055318	+	1	NA	NA	NA	37	NM_001093749	319742	Mm.49611	NM_176993	ENSMUSG00000070305	Mpzl3	5430427F17Rik|A530065I17Rik|rc	myelin protein zero-like 3	protein-coding	0.060000	0.592040	
mm_51313.1	chr6	72314301	72314501	+	1	NA	NA	NA	9791	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.010000	0.462687	
mm_141510.1	chr17	31658648	31658848	-	1	NA	NA	NA	6	NM_024187	108121	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik|35kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	0.135000	0.641791	
mm_29136.1	chr3	105800581	105800781	-	1	NA	NA	NA	700	NM_145541	109905	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein-1a	protein-coding	0.030000	0.532338	
mm_99521.1	chr11	103133938	103134138	+	1	NA	NA	NA	679	NM_027658	71059	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0.005000	0.502488	
mm_6348.1	chr1	71641993	71642193	-	1	NA	NA	NA	11141	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.035000	0.532338	
mm_55569.1	chr6	71373233	71373433	-	1	NA	NA	NA	-94	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.000000	0.487562	-23(CCTTTTAGGGGC,+,0.00)
mm_115552.1	chr13	8974429	8974629	-	1	NA	NA	NA	21483	NM_027000	69237	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0.015000	0.497512	
mm_66532.1	chr7	45136225	45136425	-	1	NA	NA	NA	107	NM_013520	14256	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	0.040000	0.626866	
mm_21007.1	chr2	152349832	152350032	-	1	NA	NA	NA	4263	NR_033505	791417	Mm.451219	NR_033505	ENSMUSG00000068062	Gm14164	OTTMUSG00000015846	predicted gene 14164	ncRNA	0.005000	0.537313	
mm_60634.1	chr7	44816229	44816429	+	1	NA	NA	NA	-41	NM_001171024	100328588	Mm.2565	NM_001171024	ENSMUSG00000074141	Gm21948	Nup62-il4i1	predicted gene, 21948	protein-coding	0.110000	0.686567	
mm_142229.1	chr17	37480706	37480906	-	1	NA	NA	NA	2723	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.005000	0.407960	
mm_114695.1	chr13	82295330	82295530	+	1	NA	NA	NA	402903	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0.000000	0.378109	
mm_155135.1	chrX	49498962	49499162	+	1	NA	NA	NA	28612	NM_001081123	75404	Mm.44305	NM_001081123	ENSMUSG00000036198	Arhgap36	1100001E04Rik|rho-gap	Rho GTPase activating protein 36	protein-coding	0.025000	0.547264	
mm_120288.1	chr14	63134827	63135027	+	1	NA	NA	NA	12465	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.020000	0.497512	
mm_147904.1	chr18	65382426	65382626	-	1	NA	NA	NA	11362	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.000000	0.412935	86(CTTTTTAAAAGC,+,0.00),86(CTTTTTAAAAGC,-,0.00)
mm_131735.1	chr16	21982258	21982458	+	1	NA	NA	NA	13184	NM_001289582	239759	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	0.005000	0.462687	
mm_57039.1	chr6	122339553	122339753	-	1	NA	NA	NA	4	NM_001042623	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.150000	0.840796	
mm_91399.1	chr10	30802815	30803015	-	1	NA	NA	NA	192	NM_172495	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.110000	0.746269	
mm_83366.1	chr9	44441111	44441311	-	1	NA	NA	NA	-343	NM_001033469	382074	Mm.335103	NM_001033469	ENSMUSG00000074397	Foxr1	Foxn5|Gm1115	forkhead box R1	protein-coding	0.050000	0.532338	-80(GCATTTAAACTC,+,0.00)
mm_98103.1	chr11	86757795	86757995	+	1	NA	NA	NA	-403	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.090000	0.661692	
mm_105123.1	chr11	101171228	101171428	-	1	NA	NA	NA	-26	NM_146030	217198	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	0.085000	0.716418	
mm_70024.1	chr7	142575958	142576158	-	1	NA	NA	NA	1089	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.015000	0.547264	
mm_104394.1	chr11	94498081	94498281	-	1	NA	NA	NA	1793	NM_027984	71889	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	0.015000	0.562189	
mm_71829.1	chr8	68896637	68896837	+	1	NA	NA	NA	16182	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.010000	0.477612	
mm_123833.1	chr14	70628888	70629088	-	1	NA	NA	NA	59	NM_001252665	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.040000	0.626866	
mm_69448.1	chr7	133015376	133015576	-	1	NA	NA	NA	-229	NM_001170744	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.015000	0.562189	
mm_26627.1	chr3	152884157	152884357	+	1	NA	NA	NA	97950	NM_012028	26938	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.020000	0.472637	
mm_110834.1	chr12	72760966	72761166	-	1	NA	NA	NA	-145	NM_008910	19042	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.120000	0.751244	
mm_96449.1	chr11	67532949	67533149	+	1	NA	NA	NA	51	NM_008088	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.010000	0.522388	1(TGGTATTTAAGC,-,0.00)
mm_52343.1	chr6	110761042	110761242	+	1	NA	NA	NA	115544	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.000000	0.323383	-19(GGCTCTTTATGG,-,0.00),-17(CTCTTTATGGCC,+,0.00)
mm_158218.1	chrX	105929213	105929413	-	1	NA	NA	NA	59	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.055000	0.577114	
mm_165023.1	chr19	32276864	32277064	-	1	NA	NA	NA	-65951	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.010000	0.517413	
mm_147726.1	chr18	61008453	61008653	-	1	NA	NA	NA	5646	NM_201353	240332	Mm.39846	NM_201353	ENSMUSG00000052026	Slc6a7	AW455934|PROT	solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	protein-coding	0.010000	0.517413	
mm_71757.1	chr8	65967079	65967279	+	1	NA	NA	NA	348654	NM_175188	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.010000	0.517413	
mm_29885.1	chr3	131171341	131171541	-	1	NA	NA	NA	58650	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.020000	0.462687	
mm_136363.1	chr16	92792199	92792399	-	1	NA	NA	NA	33775	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.010000	0.482587	
mm_6028.1	chr1	59316040	59316240	-	1	NA	NA	NA	59233	NM_001033373	271697	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	0.025000	0.462687	
mm_139218.1	chr17	47729183	47729383	+	1	NA	NA	NA	2441	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.015000	0.552239	
mm_64495.1	chr7	143459775	143459975	+	1	NA	NA	NA	1175	NM_009876	12577	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.100000	0.671642	
mm_62281.1	chr7	99625885	99626085	+	1	NA	NA	NA	1118	NM_001195529	100503386	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	0.115000	0.746269	
mm_109955.1	chr12	11882305	11882505	-	1	NA	NA	NA	494	NR_003964	627110	Mm.194735	NR_003964		Tubb2a-ps2	C79445	tubulin, beta 2a, pseudogene 2	pseudo	0.015000	0.542289	
mm_49077.1	chr6	6299333	6299533	+	1	NA	NA	NA	50774	NR_136905	101056138	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0.030000	0.482587	70(GTTTTTAGACGG,+,0.00)
mm_7608.1	chr1	126492700	126492900	-	1	NA	NA	NA	127	NM_172484	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.080000	0.666667	
mm_60154.1	chr7	39500460	39500660	+	1	NA	NA	NA	-17206	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.005000	0.383085	30(CTCTATAAATAC,-,0.00)
mm_107015.1	chr12	12342076	12342276	+	1	NA	NA	NA	50299	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	0.000000	0.393035	
mm_23322.1	chr3	53463701	53463901	+	1	NA	NA	NA	-16	NM_173382	212127	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	0.135000	0.736318	
mm_125364.1	chr15	39493553	39493753	+	1	NA	NA	NA	-165858	NM_001256384	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.000000	0.333333	
mm_45146.1	chr5	49176290	49176490	-	1	NA	NA	NA	109269	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.015000	0.383085	
mm_45363.1	chr5	66003503	66003703	-	1	NA	NA	NA	682	NR_027961	231253	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.000000	0.452736	
mm_26239.1	chr3	141465276	141465476	+	1	NA	NA	NA	-188	NM_009472	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.110000	0.731343	
mm_26504.1	chr3	145758657	145758857	+	1	NA	NA	NA	65	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.135000	0.751244	
mm_72982.1	chr8	92911672	92911872	+	1	NA	NA	NA	10377	NM_027112	69543	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	0.000000	0.467662	-74(ACTTTTAGAGTG,+,0.00)
mm_124645.1	chr15	4898618	4898818	+	1	NA	NA	NA	-19	NM_001166066	223825	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	0.005000	0.487562	14(CCACCTAAAAGC,-,0.00)
mm_86353.1	chr9	123650627	123650827	-	1	NA	NA	NA	-18162	NM_011731	22599	Mm.41963	NM_011731	ENSMUSG00000025243	Slc6a20b	AA986306|Sit1|Slc6a20|XT3|Xtrp3	solute carrier family 6 (neurotransmitter transporter), member 20B	protein-coding	0.000000	0.263682	
mm_43713.1	chr5	139405188	139405388	+	1	NA	NA	NA	-1099	NM_177000	319772	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.010000	0.532338	
mm_61671.1	chr7	80802786	80802986	+	1	NA	NA	NA	445	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.060000	0.661692	
mm_75703.1	chr8	68852500	68852700	-	1	NA	NA	NA	-27955	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.512438	-36(GCCCTTAAATGG,-,0.00),-34(CCTTAAATGGAG,+,0.00)
mm_165841.1	chr3	159495363	159495563	+	1	NA	NA	NA	30	NM_001172093	76131	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	0.070000	0.587065	
mm_166738.1	chr6	124505149	124505349	+	1	NA	NA	NA	-7372	NM_023143	50909	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	0.015000	0.567164	
mm_19755.1	chr2	105126267	105126467	-	1	NA	NA	NA	143	NR_015462	329480	Mm.246679	NR_015462	ENSMUSG00000074987	Wt1os	6030498F17|AI314831|Wt1-as	Wilms tumor 1 homolog, opposite strand	ncRNA	0.070000	0.646766	
mm_101730.1	chr11	42320965	42321165	-	1	NA	NA	NA	7	NM_008068	14399	Mm.4915	NM_008068	ENSMUSG00000020428	Gabra6	GABA-ARalpha6|Gabra-6|alpha6	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	protein-coding	0.015000	0.442786	
mm_124246.1	chr14	101608949	101609149	-	1	NA	NA	NA	142	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.055000	0.601990	
mm_3995.1	chr1	164458442	164458642	+	1	NA	NA	NA	-187	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.080000	0.731343	
mm_72104.1	chr8	71602089	71602289	+	1	NA	NA	NA	4543	NM_001166213	100037278	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	0.085000	0.676617	
mm_14962.1	chr2	152081142	152081342	+	1	NA	NA	NA	-287	NM_001160410	545474	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.025000	0.567164	
mm_92807.1	chr10	81378371	81378571	-	1	NA	NA	NA	-101	NM_019757	56371	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy/cell division cycle 20 related 1 (Drosophila)	protein-coding	0.125000	0.726368	
mm_120765.1	chr14	73381674	73381874	+	1	NA	NA	NA	3497	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.015000	0.517413	
mm_161716.1	chr17	25816466	25816666	+	1	NA	NA	NA	-7061	NM_173741	268933	Mm.95512	NM_173741	ENSMUSG00000025737	Wdr24	BC037651	WD repeat domain 24	protein-coding	0.035000	0.666667	
mm_85931.1	chr9	112095033	112095233	-	1	NA	NA	NA	23578	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.010000	0.407960	
mm_165411.1	chr2	144331353	144331553	+	1	NA	NA	NA	-91	NM_152947	107586	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0.110000	0.676617	
mm_46130.1	chr5	92505492	92505692	-	1	NA	NA	NA	65	NM_007644	12492	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.125000	0.741294	
mm_161078.1	chr12	81917492	81917692	+	1	NA	NA	NA	57562	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	0.020000	0.432836	
mm_164887.1	chr18	60984039	60984239	+	1	NA	NA	NA	20585	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.025000	0.532338	
mm_134630.1	chr16	21650296	21650496	-	1	NA	NA	NA	44269	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.005000	0.398010	
mm_73624.1	chr8	110618498	110618698	+	1	NA	NA	NA	-40	NM_146216	234729	Mm.274894	NM_146216	ENSMUSG00000010936	Vac14	AA959718|BC032215|D8Wsu151e|Tax1bp2|Trx|ingls	Vac14 homolog (S. cerevisiae)	protein-coding	0.125000	0.706468	
mm_74037.1	chr8	121906990	121907190	+	1	NA	NA	NA	596	NM_011404	20539	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	0.090000	0.681592	
mm_27707.1	chr3	67464051	67464251	-	1	NA	NA	NA	-244	NM_016753	17035	Mm.2632	NM_016753	ENSMUSG00000047557	Lxn	-	latexin	protein-coding	0.030000	0.547264	
mm_54031.1	chr6	12706679	12706879	-	1	NA	NA	NA	42474	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding	0.000000	0.398010	
mm_48855.1	chr5	149636182	149636382	-	1	NA	NA	NA	33	NM_013559	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.075000	0.582090	
mm_75203.1	chr8	39604496	39604696	-	1	NA	NA	NA	38082	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.338308	
mm_60901.1	chr7	46711899	46712099	+	1	NA	NA	NA	-1348	NM_030233	78935	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.010000	0.462687	
mm_37268.1	chr4	118542568	118542768	-	1	NA	NA	NA	1058	NM_172383	230678	Mm.23639	NM_172383	ENSMUSG00000050854	Tmem125	6330530A05Rik|AV223516	transmembrane protein 125	protein-coding	0.010000	0.577114	
mm_3229.1	chr1	135849296	135849496	+	1	NA	NA	NA	8535	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.020000	0.557214	
mm_13609.1	chr2	113365400	113365600	+	1	NA	NA	NA	37764	NM_010230	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.025000	0.542289	
mm_22729.1	chr3	19678938	19679138	+	1	NA	NA	NA	16358	NM_205769	12918	Mm.290689	NM_205769	ENSMUSG00000049796	Crh	CRF|Gm1347	corticotropin releasing hormone	protein-coding	0.005000	0.358209	-50(GAATATATAAGG,-,0.00)
mm_106293.1	chr11	118212667	118212867	-	1	NA	NA	NA	-25	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.010000	0.547264	
mm_134014.1	chr16	4879696	4879896	-	1	NA	NA	NA	55	NM_145359	207740	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.115000	0.646766	
mm_116290.1	chr13	35211913	35212113	-	1	NA	NA	NA	35	NR_126478	75543	Mm.489052	NR_126478		1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	0.030000	0.527363	
mm_100934.1	chr11	6520748	6520948	-	1	NA	NA	NA	110	NM_178440	246177	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0.015000	0.537313	
mm_108514.1	chr12	84009392	84009592	+	1	NA	NA	NA	-10	NM_012006	26897	Mm.1978	NM_012006	ENSMUSG00000072949	Acot1	ACH2|CTE-1|CTE-I|Cte1|D12Ucla1	acyl-CoA thioesterase 1	protein-coding	0.070000	0.651741	
mm_49532.1	chr6	30102057	30102257	+	1	NA	NA	NA	25836	NM_001164229	18181	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	0.020000	0.547264	
mm_109172.1	chr12	108371104	108371304	+	1	NA	NA	NA	51	NM_001286346	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.035000	0.641791	
mm_36511.1	chr4	83486368	83486568	-	1	NA	NA	NA	-20	NM_001347143	101739	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	0.145000	0.746269	
mm_140449.1	chr17	88626439	88626639	+	1	NA	NA	NA	-16	NM_029858	77057	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.010000	0.477612	
mm_155387.1	chrX	71816739	71816939	+	1	NA	NA	NA	81	NM_001290780	67048	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding	0.130000	0.691542	
mm_32067.1	chr4	97777808	97778008	+	1	NA	NA	NA	282	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.060000	0.597015	
mm_167661.1	chr9	71215747	71215947	+	1	NA	NA	NA	58	NM_009022	19378	Mm.42016	NM_009022	ENSMUSG00000013584	Aldh1a2	AV116159|Aldh1a7|Raldh1|Raldh2	aldehyde dehydrogenase family 1, subfamily A2	protein-coding	0.135000	0.716418	-64(GCCTATATACAG,+,0.00)
mm_36726.1	chr4	99103715	99103915	-	1	NA	NA	NA	17100	NM_001290636	67299	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0.030000	0.432836	
mm_139103.1	chr17	47141655	47141855	+	1	NA	NA	NA	813	NM_001097623	224829	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.035000	0.552239	
mm_167747.1	chr9	109847287	109847487	+	1	NA	NA	NA	2069	NM_009921	12796	Mm.3834	NM_009921	ENSMUSG00000038357	Camp	CAP18|Cnlp|Cramp|FALL39|MCLP	cathelicidin antimicrobial peptide	protein-coding	0.000000	0.383085	
mm_105930.1	chr11	115125831	115126031	-	1	NA	NA	NA	8061	NM_001347648	246746	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.005000	0.457711	
mm_111468.1	chr12	98574602	98574802	-	1	NA	NA	NA	10	NM_001316666	72258	Mm.196158	NM_029911	ENSMUSG00000033854	Kcnk10	1700024D23Rik|3010005K24Rik|Trek2	potassium channel, subfamily K, member 10	protein-coding	0.115000	0.671642	
mm_136566.1	chr17	3326491	3326691	+	1	NA	NA	NA	18	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.095000	0.671642	
mm_12532.1	chr2	72212561	72212761	+	1	NA	NA	NA	-72976	NM_023057	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.000000	0.353234	
mm_57400.1	chr6	124863988	124864188	-	1	NA	NA	NA	-171	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.065000	0.616915	
mm_13670.1	chr2	115581679	115581879	+	1	NA	NA	NA	63	NM_001145898	399568	Mm.134929	NM_207264	ENSMUSG00000040282	BC052040	-	cDNA sequence BC052040	protein-coding	0.065000	0.636816	
mm_132889.1	chr16	48842558	48842758	+	1	NA	NA	NA	106	NM_020509	57262	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0.010000	0.482587	-82(GCGTATAAAAGC,-,0.00)
mm_3927.1	chr1	162639053	162639253	+	1	NA	NA	NA	3	NM_010865	17926	Mm.10694	NM_010865	ENSMUSG00000026697	Myoc	AI957332|GLC1A|TIGR	myocilin	protein-coding	0.005000	0.567164	
mm_4449.1	chr1	172588629	172588829	+	1	NA	NA	NA	1839	NM_029084	74748	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	0.020000	0.572139	
mm_118909.1	chr14	26656394	26656594	+	1	NA	NA	NA	13114	NR_106132	102465773		NR_106132	ENSMUSG00000098751	Mir7672	Gm27314|mmu-mir-7672	microRNA 7672	ncRNA	0.005000	0.427861	
mm_151013.1	chr19	46761309	46761509	+	1	NA	NA	NA	-200	NM_033569	94219	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0.070000	0.646766	
mm_143482.1	chr17	71268497	71268697	-	1	NA	NA	NA	42368	NM_145158	246707	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.005000	0.472637	
mm_172078.1	chr6	145932700	145932900	-	1	NA	NA	NA	927	NM_001310837	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.055000	0.462687	35(AACTTTAAATGG,-,0.00)
mm_165534.1	chr2	180171478	180171678	+	1	NA	NA	NA	-10	NM_019822	56436	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	0.160000	0.771144	
mm_5766.1	chr1	48698596	48698796	-	1	NA	NA	NA	-1231571	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA	0.000000	0.532338	-35(CTCTATAAAAGG,-,0.00)
mm_25236.1	chr3	103887162	103887362	+	1	NA	NA	NA	-26858	NM_172684	229675	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0.010000	0.338308	
mm_74760.1	chr8	19197047	19197247	-	1	NA	NA	NA	-1557	NM_019728	56519	Mm.45276	NM_019728	ENSMUSG00000059230	Defb4	2310001F05Rik|BD-4	defensin beta 4	protein-coding	0.010000	0.432836	-91(TACTATTAAAAC,-,0.00)
mm_36584.1	chr4	88033251	88033451	-	1	NA	NA	NA	56	NM_027326	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.110000	0.701493	
mm_144834.1	chr18	36528050	36528250	+	1	NA	NA	NA	-2	NM_172830	240215	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	0.000000	0.502488	-80(CCTTTTCTGGAG,+,0.00),-34(GGGTATAAAAGC,-,0.00)
mm_23878.1	chr3	83030836	83031036	+	1	NA	NA	NA	4783	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.025000	0.447761	
mm_158017.1	chrX	95964934	95965134	-	1	NA	NA	NA	-8060	NM_152822	76130	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	0.010000	0.497512	
mm_106997.1	chr12	11276208	11276408	+	1	NA	NA	NA	10422	NM_025695	67241	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	0.005000	0.432836	25(CTCTTTAAAAGG,-,0.00),26(TCTTTAAAAGGC,+,0.00)
mm_5147.1	chr1	9748261	9748461	-	1	NA	NA	NA	21	NM_173443	70675	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	0.070000	0.592040	
mm_163974.1	chr14	55757879	55758079	-	1	NA	NA	NA	445	NM_009894	12684	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	0.030000	0.557214	
mm_83633.1	chr9	49474333	49474533	-	1	NA	NA	NA	11792	NM_172770	235330	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	0.010000	0.378109	-49(CCTTTTAAGTCA,+,0.00)
mm_36003.1	chr4	56741347	56741547	-	1	NA	NA	NA	-22	NM_025271	11471	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Tact1	actin-like 7b	protein-coding	0.010000	0.542289	
mm_28791.1	chr3	95995905	95996105	-	1	NA	NA	NA	-166	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.185000	0.800995	
mm_101778.1	chr11	45465215	45465415	-	1	NA	NA	NA	-342768	NR_045876	100009664	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.015000	0.462687	37(GGGTTTTAATGC,-,0.00)
mm_140635.1	chr17	12507625	12507825	-	1	NA	NA	NA	-21	NM_011395	20519	Mm.99252	NM_011395	ENSMUSG00000023828	Slc22a3	EMT|Oct3|Orct3|Slca22a3	solute carrier family 22 (organic cation transporter), member 3	protein-coding	0.020000	0.562189	
mm_73375.1	chr8	105635692	105635892	+	1	NA	NA	NA	-746	NM_181322	13018	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0.045000	0.462687	
mm_18091.1	chr2	44985095	44985295	-	1	NA	NA	NA	37982	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.457711	
mm_105882.1	chr11	114930309	114930509	-	1	NA	NA	NA	3977	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.000000	0.492537	
mm_25132.1	chr3	102262422	102262622	+	1	NA	NA	NA	117	NR_040391	319951	Mm.225196	NR_040391	ENSMUSG00000105891	A230001M10Rik	-	RIKEN cDNA A230001M10 gene	ncRNA	0.005000	0.457711	
mm_172472.1	chr7	44553037	44553237	-	1	NA	NA	NA	828	NM_009473	22260	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0.020000	0.507463	
mm_25468.1	chr3	108653848	108654048	+	1	NA	NA	NA	8	NM_001177771	229725	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	0.130000	0.736318	
mm_135868.1	chr16	60606403	60606603	-	1	NA	NA	NA	-972	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0.060000	0.611940	
mm_61861.1	chr7	88309877	88310077	+	1	NA	NA	NA	31892	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.015000	0.363184	
mm_110083.1	chr12	24681735	24681935	-	1	NA	NA	NA	-40	NM_001161807	12879	Mm.52265	NM_138686	ENSMUSG00000062563	Cys1	2900006B19Rik|AV218859|Ccap|ck|cpk	cystin 1	protein-coding	0.025000	0.606965	
mm_67808.1	chr7	98117725	98117925	-	1	NA	NA	NA	1668	NM_001256081	17921	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.020000	0.557214	
mm_54122.1	chr6	18387966	18388166	-	1	NA	NA	NA	126759	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding	0.030000	0.557214	
mm_28189.1	chr3	88078212	88078412	-	1	NA	NA	NA	-8	NM_172526	214191	Mm.229191	NM_172526	ENSMUSG00000051036	Ttc24	A430025D11Rik	tetratricopeptide repeat domain 24	protein-coding	0.015000	0.557214	
mm_150423.1	chr19	37408633	37408833	+	1	NA	NA	NA	-26108	NM_008245	15242	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0.010000	0.422886	1(GTTTTTAAATGC,+,0.00)
mm_69851.1	chr7	141427411	141427611	-	1	NA	NA	NA	1909	NM_021316	57754	Mm.87027	NM_021316	ENSMUSG00000060240	Cend1	1500001H12Rik|AI415214|BM88	cell cycle exit and neuronal differentiation 1	protein-coding	0.025000	0.587065	32(GCCTTTCTAGCC,+,0.00)
mm_15454.1	chr2	157424043	157424243	+	1	NA	NA	NA	-150	NM_009271	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.155000	0.840796	
mm_146234.1	chr18	77144904	77145104	+	1	NA	NA	NA	-40843	NM_153124	225742	Mm.365178	NM_013666	ENSMUSG00000025425	St8sia5	ST8SiaV|Siat8e	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding	0.005000	0.442786	
mm_44118.1	chr5	149441746	149441946	+	1	NA	NA	NA	2186	NM_001310765	75860	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	0.015000	0.512438	-42(GGCTTTATGAGG,-,0.00)
mm_78601.1	chr9	37489204	37489404	+	1	NA	NA	NA	-17	NM_146222	235184	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	0.105000	0.716418	
mm_142253.1	chr17	37569356	37569556	-	1	NA	NA	NA	-5	NM_001013575	258096	Mm.159619	NM_001013575	ENSMUSG00000051611	Olfr112	4930580F03Rik|MOR218-4	olfactory receptor 112	protein-coding	0.000000	0.472637	30(CCTTATCTGGCC,+,0.00)
mm_78339.1	chr9	25288155	25288355	+	1	NA	NA	NA	35816	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.020000	0.373134	
mm_65304.1	chr7	24676575	24676775	-	1	NA	NA	NA	-4625	NM_019981	56746	Mm.23385	NM_019981	ENSMUSG00000062773	Tex101	1700008H15Rik|AI429076|TES101RP	testis expressed gene 101	protein-coding	0.030000	0.552239	
mm_50889.1	chr6	56714865	56715065	+	1	NA	NA	NA	60	NM_030235	78937	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	0.115000	0.731343	
mm_55093.1	chr6	49263885	49264085	-	1	NA	NA	NA	67	NM_001347209	101214	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha homolog (Drosophila)	protein-coding	0.100000	0.636816	
mm_82884.1	chr9	32524408	32524608	-	1	NA	NA	NA	16944	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.015000	0.388060	
mm_78718.1	chr9	41579565	41579765	+	1	NA	NA	NA	-1588	NR_015483	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.010000	0.537313	
mm_121283.1	chr14	104190898	104191098	+	1	NA	NA	NA	-163856	NR_045953	73877	Mm.399172	NR_045953		4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.005000	0.363184	48(GTGTTTAAAAAG,-,0.00)
mm_118195.1	chr13	107857291	107857491	-	1	NA	NA	NA	32673	NM_145456	67263	Mm.490418	NM_145456	ENSMUSG00000032846	Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.020000	0.378109	
mm_158581.1	chrX	150812369	150812569	-	1	NA	NA	NA	1234	NM_001199246	80884	Mm.22575	NM_030700	ENSMUSG00000025268	Maged2	4833439A22Rik|Mage-d2|ORF1	melanoma antigen, family D, 2	protein-coding	0.005000	0.547264	
mm_33554.1	chr4	130935917	130936117	+	1	NA	NA	NA	-8368	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.005000	0.527363	
mm_15393.1	chr2	156721198	156721398	+	1	NA	NA	NA	19	NM_001042487	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.140000	0.771144	
mm_107704.1	chr12	55489312	55489512	+	1	NA	NA	NA	3235	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.025000	0.407960	
mm_25903.1	chr3	131111462	131111662	+	1	NA	NA	NA	-1229	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.085000	0.597015	
mm_131847.1	chr16	23058491	23058691	+	1	NA	NA	NA	291	NM_001102412	16644	Mm.2160	NM_023125	ENSMUSG00000022875	Kng1	Kng	kininogen 1	protein-coding	0.020000	0.462687	
mm_77353.1	chr8	119586019	119586219	-	1	NA	NA	NA	10884	NM_026648	68270	Mm.41977	NM_026648	ENSMUSG00000031831	Dnaaf1	4930457P18Rik|Lrrc50	dynein, axonemal assembly factor 1	protein-coding	0.075000	0.676617	
mm_18116.1	chr2	44996475	44996675	-	1	NA	NA	NA	26602	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.020000	0.432836	
mm_23011.1	chr3	34202577	34202777	+	1	NA	NA	NA	-121323	NM_026332	67713	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.000000	0.432836	
mm_145184.1	chr18	49478850	49479050	+	1	NA	NA	NA	-44339	NR_033785	67321	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0.010000	0.472637	
mm_116257.1	chr13	34113163	34113363	-	1	NA	NA	NA	9	NR_046184	432745	Mm.159104	NR_046184		4930447K03Rik	-	RIKEN cDNA 4930447K03 gene	ncRNA	0.015000	0.512438	
mm_875.1	chr1	52155108	52155308	+	1	NA	NA	NA	35586	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.015000	0.432836	
mm_118988.1	chr14	28504711	28504911	+	1	NA	NA	NA	-662	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.125000	0.746269	
mm_146684.1	chr18	12862137	12862337	-	1	NA	NA	NA	476	NM_001252493	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.100000	0.696517	
mm_171237.1	chr3	69005633	69005833	+	1	NA	NA	NA	761	NM_133786	70099	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	0.050000	0.606965	
mm_149628.1	chr19	17136736	17136936	+	1	NA	NA	NA	180718	NM_181348	353211	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.040000	0.537313	
mm_34714.1	chr4	152124777	152124977	+	1	NA	NA	NA	4048	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.030000	0.587065	
mm_89410.1	chr10	90829345	90829545	+	1	NA	NA	NA	-209	NM_001347054	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.125000	0.781095	
mm_167605.1	chr9	52164518	52164718	-	1	NA	NA	NA	3493	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.000000	0.402985	
mm_46396.1	chr5	104089587	104089787	-	1	NA	NA	NA	-12079	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.015000	0.427861	
mm_87277.1	chr10	41893853	41894053	+	1	NA	NA	NA	6514	NM_001013370	140742	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.000000	0.402985	-91(GTTTTTAGACAG,+,0.00)
mm_169848.1	chr1	63138910	63139110	+	1	NA	NA	NA	24270	NR_045914	100380944	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602|OTTMUSG00000002611	INO80 complex subunit D, opposite strand	ncRNA	0.020000	0.497512	-44(GCCCCTAAAAAG,-,0.00)
mm_145000.1	chr18	38379245	38379445	+	1	NA	NA	NA	-39630	NM_022996	65113	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.020000	0.522388	
mm_120663.1	chr14	70545254	70545454	+	1	NA	NA	NA	103	NM_180588	72549	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	0.095000	0.666667	
mm_166159.1	chr5	15934796	15934996	+	1	NA	NA	NA	205	NM_001110844	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.165000	0.820896	
mm_96631.1	chr11	69323903	69324103	+	1	NA	NA	NA	17	NM_001024206	245828	Mm.28073	NM_001024206	ENSMUSG00000049299	Trappc1	BET5|D11Ertd172e|MUM2	trafficking protein particle complex 1	protein-coding	0.075000	0.587065	15(GGCTTTATAAAC,-,0.00),17(CTTTATAAACCG,+,0.00)
mm_76489.1	chr8	85840525	85840725	-	1	NA	NA	NA	324	NM_028007	71927	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	0.090000	0.686567	
mm_32168.1	chr4	100305557	100305757	+	1	NA	NA	NA	-173210	NM_001033773	381534	Mm.318133	NM_001033773	ENSMUSG00000069733	Ube2u	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding	0.000000	0.353234	
mm_52191.1	chr6	99770427	99770627	+	1	NA	NA	NA	-44135	NM_001170419	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.050000	0.537313	
mm_128321.1	chr15	38009573	38009773	-	1	NA	NA	NA	-48618	NM_199476	382985	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.015000	0.472637	
mm_116409.1	chr13	41425903	41426103	-	1	NA	NA	NA	61357	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.020000	0.502488	
mm_122030.1	chr14	29721692	29721892	-	1	NA	NA	NA	72	NM_009785	12294	Mm.386754	NM_009785	ENSMUSG00000021991	Cacna2d3	Cacnad3|alapha2delta3	calcium channel, voltage-dependent, alpha2/delta subunit 3	protein-coding	0.190000	0.830846	
mm_57917.1	chr6	133851913	133852113	-	1	NA	NA	NA	1654	NM_010594	16483	Mm.13052	NM_010594	ENSMUSG00000032758	Kap	AW146435|FKSG22	kidney androgen regulated protein	protein-coding	0.010000	0.398010	
mm_68118.1	chr7	102116612	102116812	-	1	NA	NA	NA	1	NM_001081424	504186	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	0.005000	0.532338	
mm_40991.1	chr5	77280691	77280891	+	1	NA	NA	NA	8034	NR_039557	100628577		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.025000	0.452736	
mm_135969.1	chr16	74925754	74925954	-	1	NA	NA	NA	-514942	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.000000	0.233831	-64(GGATATAAAAGT,-,0.00)
mm_68085.1	chr7	101870683	101870883	-	1	NA	NA	NA	5	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.005000	0.512438	-35(AGCCATAAAGGC,-,0.00)
mm_38477.1	chr4	140699574	140699774	-	1	NA	NA	NA	-1799	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.035000	0.512438	
mm_10801.1	chr2	24349591	24349791	+	1	NA	NA	NA	4320	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.010000	0.477612	
mm_113001.1	chr13	21810335	21810535	+	1	NA	NA	NA	-32	NM_178185	319171	Mm.250564	NM_178185	ENSMUSG00000094777	Hist1h2ap	ENSMUSG00000060262|Gm11276|OTTMUSG00000000448	histone cluster 1, H2ap	protein-coding	0.060000	0.552239	
mm_166028.1	chr4	126047116	126047316	+	1	NA	NA	NA	288	NM_025544	66407	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	0.065000	0.666667	
mm_137218.1	chr17	24170821	24171021	+	1	NA	NA	NA	-1492	NM_009729	11984	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0.010000	0.532338	
mm_18888.1	chr2	76709413	76709613	-	1	NA	NA	NA	34198	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.035000	0.507463	
mm_16068.1	chr2	168080930	168081130	+	1	NA	NA	NA	26	NM_021409	58220	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0.155000	0.791045	
mm_120525.1	chr14	66911124	66911324	+	1	NA	NA	NA	16	NM_175498	239157	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	0.085000	0.681592	
mm_51360.1	chr6	72629194	72629394	+	1	NA	NA	NA	6	NR_040422	100038714	Mm.321330	NR_040421		Gm15401	ENSMUSG00000072999|OTTMUSG00000021199	predicted gene 15401	ncRNA	0.015000	0.437811	
mm_154810.1	chrX	13632009	13632209	+	1	NA	NA	NA	-660	NM_011823	23890	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	0.010000	0.452736	
mm_154601.1	chrX	7607018	7607218	+	1	NA	NA	NA	15	NM_019582	54652	Mm.289647	NM_019582	ENSMUSG00000031142	Cacna1f	A930034B14|Cav1.4|Sfc17|nerg1|nob2	calcium channel, voltage-dependent, alpha 1F subunit	protein-coding	0.020000	0.552239	
mm_15468.1	chr2	157470749	157470949	+	1	NA	NA	NA	46556	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.005000	0.572139	
mm_98405.1	chr11	94328170	94328370	+	1	NA	NA	NA	269	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.100000	0.736318	
mm_122682.1	chr14	52014681	52014881	-	1	NA	NA	NA	-223	NM_001253695	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.135000	0.805970	
mm_136283.1	chr16	91355143	91355343	-	1	NA	NA	NA	-17540	NM_010509	15976	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.025000	0.507463	
mm_10014.1	chr1	191990049	191990249	-	1	NA	NA	NA	8485	NR_039566	100628582		NR_039566	ENSMUSG00000093003	Mir3473c	mmu-mir-3473c	microRNA 3473c	ncRNA	0.065000	0.636816	
mm_35997.1	chr4	56000701	56000901	-	1	NA	NA	NA	-468326	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.010000	0.388060	
mm_115738.1	chr13	17804857	17805057	-	1	NA	NA	NA	140	NM_001081058	69562	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.185000	0.791045	
mm_167920.1	chrX	102004965	102005165	+	1	NA	NA	NA	66242	NM_001278534	331474	Mm.23297	NM_183318	ENSMUSG00000049191	Rgag4	6430402L03Rik|Mar5|Mart5|mKIAA2001	retrotransposon gag domain containing 4	protein-coding	0.045000	0.606965	
mm_16098.1	chr2	168981077	168981277	+	1	NA	NA	NA	2908	NR_040326	75508	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.010000	0.522388	
mm_50100.1	chr6	41533053	41533253	+	1	NA	NA	NA	11377	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.517413	
mm_39588.1	chr5	23495987	23496187	+	1	NA	NA	NA	61658	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.010000	0.427861	
mm_107989.1	chr12	73211981	73212181	+	1	NA	NA	NA	74630	NM_029580	76357	Mm.311344	NM_029580	ENSMUSG00000034442	Trmt5	2610027O18Rik|mKIAA1393	TRM5 tRNA methyltransferase 5	protein-coding	0.005000	0.293532	-100(GACCTTAAAAGC,-,0.00)
mm_97452.1	chr11	78194453	78194653	+	1	NA	NA	NA	1161	NM_001045516	216974	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	0.035000	0.567164	
mm_98298.1	chr11	90030227	90030427	+	1	NA	NA	NA	-21	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.020000	0.472637	
mm_71025.1	chr8	33536512	33536712	+	1	NA	NA	NA	-33932	NM_031374	104271	Mm.280624	NM_031374	ENSMUSG00000009628	Tex15	2210014E14Rik|AL022622|AU022940	testis expressed gene 15	protein-coding	0.000000	0.383085	
mm_79011.1	chr9	45595602	45595802	+	1	NA	NA	NA	-164470	NR_040732	74602	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.020000	0.437811	
mm_32716.1	chr4	116221503	116221703	+	1	NA	NA	NA	-311	NM_181585	18710	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55pik	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	protein-coding	0.065000	0.641791	
mm_110051.1	chr12	19175622	19175822	-	1	NA	NA	NA	661212	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.085000	0.706468	
mm_132302.1	chr16	33523586	33523786	+	1	NA	NA	NA	5091	NM_001083902	171286	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.020000	0.442786	
mm_36178.1	chr4	62208319	62208519	-	1	NA	NA	NA	127	NM_001290351	22696	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0.095000	0.656716	
mm_163256.1	chr11	109650907	109651107	+	1	NA	NA	NA	86	NM_001313976	19084	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.135000	0.731343	
mm_82471.1	chr9	16339360	16339560	-	1	NA	NA	NA	38771	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.000000	0.452736	
mm_77302.1	chr8	117343584	117343784	-	1	NA	NA	NA	-5486	NM_028941	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.035000	0.582090	
mm_100481.1	chr11	120232837	120233037	+	1	NA	NA	NA	-10	NM_001347621	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.075000	0.611940	
mm_123743.1	chr14	70191423	70191623	-	1	NA	NA	NA	723	NM_001271409	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.020000	0.552239	
mm_171291.1	chr3	90087362	90087562	-	1	NA	NA	NA	7941	NM_001293749	59069	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0.020000	0.442786	-28(TCTTTTAGAGCC,+,0.00)
mm_140295.1	chr17	85620751	85620951	+	1	NA	NA	NA	17	NM_011381	20473	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0.045000	0.512438	
mm_172763.1	chr8	91601246	91601446	-	1	NA	NA	NA	200308	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.035000	0.512438	-29(TTCTATAAAAGT,-,0.00)
mm_73232.1	chr8	104111348	104111548	+	1	NA	NA	NA	-5575	NR_131138	546096	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	-	predicted gene, 29682	ncRNA	0.010000	0.527363	
mm_21356.1	chr2	157124871	157125071	-	1	NA	NA	NA	10251	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.010000	0.492537	
mm_111104.1	chr12	80931348	80931548	-	1	NA	NA	NA	-7001	NR_033786	67340	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.010000	0.467662	-34(CCCTTTATATTG,+,0.00)
mm_75238.1	chr8	39631102	39631302	-	1	NA	NA	NA	11476	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.015000	0.353234	
mm_40083.1	chr5	34525683	34525883	+	1	NA	NA	NA	-1	NM_011893	24055	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.065000	0.711443	
mm_35131.1	chr4	11254157	11254357	-	1	NA	NA	NA	2	NM_178112	72656	Mm.246713	NM_178112	ENSMUSG00000040738	Ints8	2810013E07Rik|AV063769|D130008D20Rik	integrator complex subunit 8	protein-coding	0.075000	0.626866	
mm_55745.1	chr6	77979469	77979669	-	1	NA	NA	NA	98	NM_145732	12386	Mm.34637	NM_009819	ENSMUSG00000063063	Ctnna2	AI481747|Catna|Catna2|cdf|chp	catenin (cadherin associated protein), alpha 2	protein-coding	0.100000	0.746269	
mm_160711.1	chr10	60277553	60277753	+	1	NA	NA	NA	25	NM_001146121	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.110000	0.656716	
mm_122219.1	chr14	32388232	32388432	-	1	NA	NA	NA	41	NM_001034037	67085	Mm.109099	NM_001034037	ENSMUSG00000072473	1700024G13Rik	C10orf53	RIKEN cDNA 1700024G13 gene	protein-coding	0.040000	0.626866	
mm_23550.1	chr3	61366420	61366620	+	1	NA	NA	NA	2013	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.010000	0.353234	
mm_136622.1	chr17	5521947	5522147	+	1	NA	NA	NA	29447	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.005000	0.497512	
mm_129784.1	chr15	82794354	82794554	-	1	NA	NA	NA	-209	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.015000	0.512438	
mm_154824.1	chrX	16634489	16634689	+	1	NA	NA	NA	14891	NM_173740	17161	Mm.21108	NM_173740	ENSMUSG00000025037	Maoa	1110061B18Rik|AA407771	monoamine oxidase A	protein-coding	0.005000	0.388060	
mm_161925.1	chr18	76262329	76262529	+	1	NA	NA	NA	-16	NM_001311070	17126	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0.015000	0.368159	1(TCTTTTCTAGGG,+,0.00)
mm_121725.1	chr14	16575419	16575619	-	1	NA	NA	NA	-43	NM_001289762	218772	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	0.030000	0.497512	-91(GAGTTTTTAAGC,-,0.00),-89(GTTTTTAAGCGC,+,0.00)
mm_3405.1	chr1	143916680	143916880	+	1	NA	NA	NA	87369	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.025000	0.512438	
mm_46099.1	chr5	92347263	92347463	-	1	NA	NA	NA	1526	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.020000	0.532338	-24(AGGTCTAAAAGG,-,0.00)
mm_115004.1	chr13	98316265	98316465	+	1	NA	NA	NA	602	NM_145455	218490	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	0.065000	0.562189	
mm_123896.1	chr14	73049014	73049214	-	1	NA	NA	NA	0	NM_133720	70086	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	0.025000	0.492537	
mm_121799.1	chr14	20138457	20138657	-	1	NA	NA	NA	43225	NM_021542	16529	Mm.68998	NM_021542	ENSMUSG00000023243	Kcnk5	KCNK5b|TASK-2	potassium channel, subfamily K, member 5	protein-coding	0.020000	0.472637	
mm_124101.1	chr14	79300920	79301120	-	1	NA	NA	NA	615	NM_025427	66214	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	0.045000	0.592040	
mm_56299.1	chr6	91716257	91716457	-	1	NA	NA	NA	32290	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.005000	0.507463	
mm_26709.1	chr3	157947153	157947353	+	1	NA	NA	NA	-213	NM_001013806	433667	Mm.265806	NM_001013806	ENSMUSG00000039988	Ankrd13c	AI505652|AU022220	ankyrin repeat domain 13c	protein-coding	0.145000	0.716418	
mm_173109.1	chrX	157491901	157492101	-	1	NA	NA	NA	45	NM_009214	20603	Mm.18652	NM_009214	ENSMUSG00000071708	Sms	AI427066|Gy|SPMSY|SpmST|gyro	spermine synthase	protein-coding	0.100000	0.711443	
mm_71418.1	chr8	46488643	46488843	+	1	NA	NA	NA	-2223	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.030000	0.492537	
mm_51322.1	chr6	72315890	72316090	+	1	NA	NA	NA	11380	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.005000	0.452736	
mm_106187.1	chr11	116807049	116807249	-	1	NA	NA	NA	20897	NM_026280	67622	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0.015000	0.407960	
mm_155028.1	chrX	42067932	42068132	+	1	NA	NA	NA	196	NM_009688	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.090000	0.686567	
mm_22134.1	chr2	170469912	170470112	-	1	NA	NA	NA	-26416	NM_001013369	109054	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	0.005000	0.407960	73(CCCCATAAAGAG,-,0.00)
mm_58547.1	chr7	4658562	4658762	+	1	NA	NA	NA	288	NM_172894	243819	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.150000	0.731343	
mm_116638.1	chr13	49015188	49015388	-	1	NA	NA	NA	47176	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.020000	0.532338	-36(CACTATAAAAGG,-,0.00)
mm_38404.1	chr4	138973457	138973657	-	1	NA	NA	NA	652	NM_029857	77056	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	0.055000	0.651741	
mm_75969.1	chr8	72002455	72002655	-	1	NA	NA	NA	7071	NM_024444	72054	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	0.005000	0.562189	
mm_56120.1	chr6	87532253	87532453	-	1	NA	NA	NA	906	NM_001037727	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.015000	0.402985	
mm_135573.1	chr16	50330944	50331144	-	1	NA	NA	NA	101345	NM_027444	70508	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.005000	0.457711	
mm_164119.1	chr15	36077470	36077670	-	1	NA	NA	NA	62830	NM_001195748	626596	Mm.321798	NM_001195748	ENSMUSG00000037627	Rgs22	-	regulator of G-protein signalling 22	protein-coding	0.005000	0.477612	
mm_71099.1	chr8	35375643	35375843	+	1	NA	NA	NA	2	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.030000	0.587065	
mm_142747.1	chr17	48432750	48432950	-	1	NA	NA	NA	-122	NM_009694	11811	Mm.281793	NM_009694	ENSMUSG00000040694	Apobec2	Arp1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2	protein-coding	0.015000	0.552239	85(GCTTATAAAGCC,+,0.00)
mm_40605.1	chr5	64391469	64391669	+	1	NA	NA	NA	76373	NR_040681	69999	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.015000	0.562189	
mm_112122.1	chr12	112860877	112861077	-	1	NA	NA	NA	-61	NM_019925	56696	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.020000	0.587065	
mm_62649.1	chr7	107685415	107685615	+	1	NA	NA	NA	72517	NM_001205227	320635	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	0.010000	0.522388	
mm_146787.1	chr18	20114581	20114781	-	1	NA	NA	NA	92	NM_001291804	13505	Mm.33740	NM_013504	ENSMUSG00000044322	Dsc1	1110020A10Rik|AI507491	desmocollin 1	protein-coding	0.010000	0.552239	
mm_170206.1	chr17	6961061	6961261	-	1	NA	NA	NA	-5	NM_147155	380608	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	0.135000	0.716418	
mm_120895.1	chr14	75845234	75845434	+	1	NA	NA	NA	78	NM_009429	22070	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	0.155000	0.726368	-36(CTCTATATGAGG,-,0.00)
mm_17556.1	chr2	30124458	30124658	-	1	NA	NA	NA	53	NM_178694	227693	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	0.090000	0.691542	
mm_52735.1	chr6	120419312	120419512	+	1	NA	NA	NA	-43785	NM_008359	16172	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.010000	0.333333	
mm_54682.1	chr6	39419850	39420050	-	1	NA	NA	NA	-174	NM_001311109	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.140000	0.746269	
mm_167672.1	chr9	74861837	74862037	+	1	NA	NA	NA	16	NM_008262	15379	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	0.115000	0.736318	
mm_1529.1	chr1	72849067	72849267	+	1	NA	NA	NA	23780	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.025000	0.577114	
mm_133430.1	chr16	87553344	87553544	+	1	NA	NA	NA	114	NM_144854	224419	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	0.035000	0.611940	
mm_77152.1	chr8	111686472	111686672	-	1	NA	NA	NA	3102	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.025000	0.517413	
mm_17361.1	chr2	26657130	26657330	-	1	NA	NA	NA	14052	NM_010695	16821	Mm.123925	NM_010695	ENSMUSG00000026919	Lcn4	A630045M08Rik|Vnsp2	lipocalin 4	protein-coding	0.010000	0.427861	
mm_162499.1	chr1	139483425	139483625	+	1	NA	NA	NA	-18182	NM_031164	14060	Mm.30105	NM_031164	ENSMUSG00000026368	F13b	Cf-13b|Cf13b	coagulation factor XIII, beta subunit	protein-coding	0.000000	0.497512	
mm_129785.1	chr15	82794379	82794579	-	1	NA	NA	NA	-234	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.015000	0.502488	
mm_121967.1	chr14	25517196	25517396	-	1	NA	NA	NA	-17143	NR_037236	100526533		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.015000	0.572139	
mm_46984.1	chr5	115300863	115301063	-	1	NA	NA	NA	27	NM_019682	56455	Mm.256858	NM_019682	ENSMUSG00000009013	Dynll1	Dlc8|Dnclc1|Pin	dynein light chain LC8-type 1	protein-coding	0.125000	0.716418	
mm_11240.1	chr2	29889103	29889303	+	1	NA	NA	NA	-517	NM_001177661	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.050000	0.552239	
mm_146359.1	chr18	82584093	82584293	+	1	NA	NA	NA	29685	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.055000	0.527363	
mm_36497.1	chr4	83316180	83316380	-	1	NA	NA	NA	7909	NM_027238	69863	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.000000	0.432836	-77(GCCTTTTTAGGG,-,0.00),-75(CTTTTTAGGGGC,+,0.00)
mm_170618.1	chr19	61266599	61266799	-	1	NA	NA	NA	-38281	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.070000	0.601990	
mm_131042.1	chr16	3884651	3884851	+	1	NA	NA	NA	132	NM_001290689	74763	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|Nat15	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0.125000	0.736318	
mm_127932.1	chr15	10485320	10485520	-	1	NA	NA	NA	517	NM_026396	67832	Mm.28057	NM_026396	ENSMUSG00000022247	Brix1	1110064N10Rik|Bxdc2|C76935	BRX1, biogenesis of ribosomes	protein-coding	0.015000	0.363184	
mm_65329.1	chr7	24978206	24978406	-	1	NA	NA	NA	-5578	NM_010261	14470	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.025000	0.587065	
mm_150420.1	chr19	37376291	37376491	+	1	NA	NA	NA	-12	NM_010615	16551	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	0.115000	0.626866	
mm_98036.1	chr11	85339573	85339773	+	1	NA	NA	NA	-13491	NM_001166642	192197	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.025000	0.492537	
mm_110179.1	chr12	27337393	27337593	-	1	NA	NA	NA	5225	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.010000	0.368159	
mm_83304.1	chr9	44033899	44034099	-	1	NA	NA	NA	-9385	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.035000	0.462687	
mm_81644.1	chr9	110948231	110948431	+	1	NA	NA	NA	-2173	NM_011562	21667	Mm.5090	NM_011562	ENSMUSG00000032494	Tdgf1	CR1|cripto	teratocarcinoma-derived growth factor 1	protein-coding	0.010000	0.462687	
mm_42982.1	chr5	123239597	123239797	+	1	NA	NA	NA	11507	NM_026000	67151	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0.040000	0.597015	
mm_116474.1	chr13	43525492	43525692	-	1	NA	NA	NA	34599	NM_001081059	76137	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0.015000	0.502488	
mm_173062.1	chrX	129356822	129357022	+	1	NA	NA	NA	305398	NR_045441	75274	Mm.108718	NR_045441	ENSMUSG00000086244	4930558G05Rik	-	RIKEN cDNA 4930558G05 gene	ncRNA	0.025000	0.502488	-17(GAGTTTAAGAGG,-,0.00)
mm_63886.1	chr7	137437520	137437720	+	1	NA	NA	NA	-28	NM_023140	30926	Mm.267692	NM_023140	ENSMUSG00000031068	Glrx3	PICOT|Txnl2	glutaredoxin 3	protein-coding	0.115000	0.726368	
mm_153983.1	chr19	47914412	47914612	-	1	NA	NA	NA	4787	NM_001001738	414801	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER|mKIAA1754	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	0.010000	0.482587	
mm_157801.1	chrX	73927908	73928108	-	1	NA	NA	NA	2842	NM_023132	19703	Mm.236969	NM_023132	ENSMUSG00000031387	Renbp	Age|Rnbp	renin binding protein	protein-coding	0.005000	0.522388	-77(CCCTTGATAAGG,-,0.00)
mm_16220.1	chr2	173110707	173110907	+	1	NA	NA	NA	8718	NM_001081387	664799	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris|OTTMUSG00000016680	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.025000	0.492537	
mm_12238.1	chr2	68845033	68845233	+	1	NA	NA	NA	-16308	NM_172856	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.015000	0.507463	
mm_47459.1	chr5	123661577	123661777	-	1	NA	NA	NA	22684	NM_019765	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.010000	0.427861	
mm_37488.1	chr4	123612005	123612205	-	1	NA	NA	NA	-4315	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.000000	0.363184	
mm_17760.1	chr2	32775537	32775737	-	1	NA	NA	NA	-4	NM_001290563	338348	Mm.475130	NM_177384	ENSMUSG00000039021	Ttc16	1200002K10Rik	tetratricopeptide repeat domain 16	protein-coding	0.100000	0.646766	
mm_42248.1	chr5	113945358	113945558	+	1	NA	NA	NA	-36752	NM_011779	23790	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0.005000	0.472637	
mm_100492.1	chr11	120458020	120458220	+	1	NA	NA	NA	-9	NM_152807	67291	Mm.103384	NM_152807	ENSMUSG00000049957	Ccdc137	3110023B02Rik	coiled-coil domain containing 137	protein-coding	0.085000	0.656716	
mm_116268.1	chr13	34652546	34652746	-	1	NA	NA	NA	35	NM_025831	66895	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0.140000	0.691542	-68(TGCCTTATAAAG,-,0.00),-66(CCTTATAAAGCC,+,0.00)
mm_39928.1	chr5	31613843	31614043	+	1	NA	NA	NA	-8	NM_025796	66845	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0.070000	0.567164	
mm_92924.1	chr10	84440545	84440745	-	1	NA	NA	NA	-174	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.150000	0.771144	
mm_93783.1	chr10	120476698	120476898	-	1	NA	NA	NA	-329	NM_010441	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0.055000	0.636816	
mm_171399.1	chr4	12325981	12326181	-	1	NA	NA	NA	-154066	NM_026558	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.015000	0.497512	
mm_82355.1	chr9	14380942	14381142	-	1	NA	NA	NA	200	NM_028013	71946	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0.105000	0.746269	
mm_171891.1	chr5	38225842	38226042	+	1	NA	NA	NA	5460	NM_025281	17089	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	0.005000	0.532338	
mm_6703.1	chr1	82236309	82236509	-	1	NA	NA	NA	55030	NM_010570	16367	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.010000	0.358209	
mm_91711.1	chr10	44148846	44149046	-	1	NA	NA	NA	-21501	NR_001582	70365	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	0.095000	0.721393	
mm_26318.1	chr3	142521493	142521693	+	1	NA	NA	NA	-8743	NM_001083312	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.000000	0.388060	
mm_158949.1	chr1	86156809	86157009	+	1	NA	NA	NA	2129	NM_001310702	78795	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.015000	0.447761	
mm_83159.1	chr9	40465624	40465824	-	1	NA	NA	NA	-9960	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.015000	0.457711	
mm_119420.1	chr14	45329732	45329932	+	1	NA	NA	NA	8	NM_025959	67089	Mm.18472	NM_025959	ENSMUSG00000021832	Psmc6	2300001E01Rik|AI451058	proteasome (prosome, macropain) 26S subunit, ATPase, 6	protein-coding	0.085000	0.671642	
mm_3950.1	chr1	164061953	164062153	+	1	NA	NA	NA	-23	NM_011346	20343	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.015000	0.547264	
mm_138753.1	chr17	37046478	37046678	+	1	NA	NA	NA	612	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.135000	0.786070	
mm_35615.1	chr4	43429034	43429234	-	1	NA	NA	NA	0	NM_177377	329831	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0.035000	0.611940	
mm_130157.1	chr15	91191617	91191817	-	1	NA	NA	NA	90	NM_011994	26874	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.035000	0.502488	58(AGCTTTTAAAAC,-,0.00),59(GCTTTTAAAACG,+,0.00),60(CTTTTAAAACGA,+,0.00)
mm_70272.1	chr8	3598244	3598444	+	1	NA	NA	NA	10894	NM_001347111	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.000000	0.522388	
mm_166023.1	chr4	123983293	123983493	+	1	NA	NA	NA	65960	NM_017475	54170	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.005000	0.378109	
mm_151153.1	chr19	53142694	53142894	+	1	NA	NA	NA	38	NM_001164100	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.095000	0.666667	62(GGCTTTAAATGA,-,0.00)
mm_46020.1	chr5	90905113	90905313	-	1	NA	NA	NA	1314	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.025000	0.512438	55(GTATCTTAAAGG,-,0.00)
mm_112799.1	chr13	20470018	20470218	+	1	NA	NA	NA	-2872	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.005000	0.373134	
mm_16924.1	chr2	13582458	13582658	-	1	NA	NA	NA	8247	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.015000	0.393035	
mm_163687.1	chr13	96470672	96470872	+	1	NA	NA	NA	388	NM_001042714	271144	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0.015000	0.492537	
mm_62930.1	chr7	118633659	118633859	+	1	NA	NA	NA	23	NM_028930	74424	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	0.000000	0.442786	-57(TCTTTAATGGAG,+,0.00)
mm_129739.1	chr15	82212704	82212904	-	1	NA	NA	NA	11	NM_001207021	435145	Mm.41289	NM_001207021	ENSMUSG00000096883	Shisa8	Orf26|ckamp39	shisa family member 8	protein-coding	0.150000	0.800995	
mm_127880.1	chr15	8635936	8636136	-	1	NA	NA	NA	74771	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.015000	0.457711	
mm_145617.1	chr18	61105723	61105923	+	1	NA	NA	NA	251	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.020000	0.462687	
mm_86653.1	chr10	17724121	17724321	+	1	NA	NA	NA	993	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.065000	0.671642	
mm_127414.1	chr15	101258299	101258499	+	1	NA	NA	NA	-8447	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.010000	0.601990	
mm_158105.1	chrX	102050626	102050826	-	1	NA	NA	NA	20581	NM_001278534	331474	Mm.23297	NM_183318	ENSMUSG00000049191	Rgag4	6430402L03Rik|Mar5|Mart5|mKIAA2001	retrotransposon gag domain containing 4	protein-coding	0.000000	0.462687	
mm_121022.1	chr14	79587606	79587806	+	1	NA	NA	NA	15	NM_026474	67955	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0.090000	0.641791	
mm_52102.1	chr6	97874078	97874278	+	1	NA	NA	NA	-55639	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.035000	0.482587	
mm_145590.1	chr18	60985866	60986066	+	1	NA	NA	NA	22412	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.005000	0.502488	
mm_52301.1	chr6	108814896	108815096	+	1	NA	NA	NA	-13645	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.030000	0.467662	
mm_114622.1	chr13	76018666	76018866	+	1	NA	NA	NA	-54	NM_001131069	218341	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	0.060000	0.606965	
mm_69835.1	chr7	141279030	141279230	-	1	NA	NA	NA	3	NM_001287171	20287	Mm.4723	NM_011328	ENSMUSG00000038580	Sct	-	secretin	protein-coding	0.110000	0.711443	
mm_11163.1	chr2	28556701	28556901	+	1	NA	NA	NA	6602	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.025000	0.552239	
mm_34670.1	chr4	150924559	150924759	+	1	NA	NA	NA	-3340	NM_001077509	21942	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.045000	0.592040	
mm_13343.1	chr2	102787867	102788067	+	1	NA	NA	NA	81529	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.000000	0.388060	
mm_3395.1	chr1	143640670	143640870	+	1	NA	NA	NA	73	NM_020025	26878	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.030000	0.512438	
mm_104764.1	chr11	98479356	98479556	-	1	NA	NA	NA	32622	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.005000	0.298507	
mm_154103.1	chr19	57045641	57045841	-	1	NA	NA	NA	-37166	NM_001177797	226250	Mm.226284	NM_146102	ENSMUSG00000025083	Afap1l2	AU041783|C86904|mKIAA1914	actin filament associated protein 1-like 2	protein-coding	0.015000	0.422886	
mm_117495.1	chr13	78198702	78198902	-	1	NA	NA	NA	71	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.110000	0.736318	
mm_7389.1	chr1	110977315	110977515	-	1	NA	NA	NA	-43	NM_001081386	227485	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding	0.020000	0.422886	
mm_131281.1	chr16	11143804	11144004	+	1	NA	NA	NA	-9372	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.020000	0.482587	
mm_194.1	chr1	15804278	15804478	+	1	NA	NA	NA	-1268	NM_009352	21749	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	0.015000	0.512438	
mm_149013.1	chr19	8740605	8740805	+	1	NA	NA	NA	-13	NM_001177347	74307	Mm.48791	NM_001177347	ENSMUSG00000090840	1700092M07Rik	-	RIKEN cDNA 1700092M07 gene	protein-coding	0.045000	0.606965	
mm_65219.1	chr7	19698954	19699154	-	1	NA	NA	NA	134	NM_001305843	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.035000	0.636816	
mm_1305.1	chr1	64690770	64690970	+	1	NA	NA	NA	-211	NR_038009	69941	Mm.69044	NR_038009	ENSMUSG00000087213	2810408I11Rik	-	RIKEN cDNA 2810408I11 gene	ncRNA	0.125000	0.726368	18(CCTTTTAAATAA,+,0.00)
mm_167280.1	chr8	36248522	36248722	+	1	NA	NA	NA	894	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.150000	0.756219	
mm_57370.1	chr6	124779655	124779855	-	1	NA	NA	NA	-28	NM_001302555	16977	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	0.045000	0.492537	
mm_128307.1	chr15	37791899	37792099	-	1	NA	NA	NA	1	NM_001170866	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.125000	0.766169	
mm_145514.1	chr18	60443049	60443249	+	1	NA	NA	NA	58834	NM_134133	106878	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.010000	0.383085	
mm_78559.1	chr9	35672749	35672949	+	1	NA	NA	NA	3210	NM_001033421	330921	Mm.479701	NM_001033421	ENSMUSG00000074452	Pate2	Gm846|Pate-M|mANLP1	prostate and testis expressed 2	protein-coding	0.005000	0.343284	
mm_84664.1	chr9	71975878	71976078	-	1	NA	NA	NA	12537	NR_029879	723889		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.000000	0.353234	
mm_106234.1	chr11	117639661	117639861	-	1	NA	NA	NA	-14528	NM_198022	217351	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.005000	0.527363	
mm_101789.1	chr11	46058085	46058285	-	1	NA	NA	NA	2201	NM_001291891	11492	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.030000	0.457711	
mm_143547.1	chr17	74017104	74017304	-	1	NA	NA	NA	30712	NM_053188	94224	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.000000	0.323383	
mm_167878.1	chrX	37805125	37805325	-	1	NA	NA	NA	-21830	NM_008955	19202	Mm.10105	NM_008955	ENSMUSG00000006200	Rhox6	AV213605|AW548842|Psx1	reproductive homeobox 6	protein-coding	0.010000	0.567164	
mm_158892.1	chr1	20917658	20917858	+	1	NA	NA	NA	27136	NM_028829	74229	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	0.015000	0.442786	
mm_36594.1	chr4	88719004	88719204	-	1	NA	NA	NA	3404	NM_172871	242521	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|ENSMUSG00000070923|mKIAA1354	kelch-like 9	protein-coding	0.005000	0.388060	
mm_99783.1	chr11	107337899	107338099	+	1	NA	NA	NA	132721	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.010000	0.472637	
mm_138526.1	chr17	35242083	35242283	+	1	NA	NA	NA	437	NM_019693	53817	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	0.080000	0.696517	
mm_1632.1	chr1	74505975	74506175	+	1	NA	NA	NA	15	NM_021383	58184	Mm.291708	NM_021383	ENSMUSG00000026174	Cnot9	2610007F23Rik|AI593551|Fl10|Rqcd1	CCR4-NOT transcription complex, subunit 9	protein-coding	0.060000	0.547264	
mm_501.1	chr1	37029223	37029423	+	1	NA	NA	NA	-89796	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.060000	0.646766	
mm_29125.1	chr3	105426438	105426638	-	1	NA	NA	NA	-25792	NM_001039347	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	0.020000	0.512438	
mm_1574.1	chr1	74267681	74267881	+	1	NA	NA	NA	-10819	NM_174985	227289	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.025000	0.527363	
mm_111756.1	chr12	103956796	103956996	-	1	NA	NA	NA	1	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	0.005000	0.512438	-32(GCTTAAATACAG,+,0.00)
mm_129416.1	chr15	78388667	78388867	-	1	NA	NA	NA	2	NM_001163613	73376	Mm.73222	NM_028522	ENSMUSG00000062154	Tex33	1700061J05Rik|Ean57	testis expressed 33	protein-coding	0.000000	0.522388	
mm_67610.1	chr7	83883714	83883914	-	1	NA	NA	NA	527	NM_030705	80889	Mm.272998	NM_030705	ENSMUSG00000070462	Mesdc1	AW061151	mesoderm development candidate 1	protein-coding	0.145000	0.791045	4(CGCCCTAAGAGC,-,0.00)
mm_101922.1	chr11	50200788	50200988	-	1	NA	NA	NA	9932	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.035000	0.537313	
mm_103767.1	chr11	81867604	81867804	-	1	NA	NA	NA	7027	NR_038010	71388	Mm.158687	NR_038010	ENSMUSG00000020703	5530401A14Rik	-	RIKEN cDNA 5530401A14 gene	ncRNA	0.000000	0.452736	
mm_123932.1	chr14	73366417	73366617	-	1	NA	NA	NA	18754	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.035000	0.472637	-73(ACATTTAAAAGC,-,0.00)
mm_127914.1	chr15	9529934	9530134	-	1	NA	NA	NA	-158	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.010000	0.437811	
mm_20185.1	chr2	122600414	122600614	-	1	NA	NA	NA	10763	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.015000	0.378109	39(CTCTTTTAAAGA,-,0.00),40(TCTTTTAAAGAC,+,0.00)
mm_128156.1	chr15	32248553	32248753	-	1	NA	NA	NA	3840	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding	0.005000	0.328358	
mm_143109.1	chr17	57172360	57172560	-	1	NA	NA	NA	21721	NM_019418	50930	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0.015000	0.457711	
mm_132791.1	chr16	45093517	45093717	+	1	NA	NA	NA	-436	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.015000	0.522388	
mm_99797.1	chr11	107546813	107547013	+	1	NA	NA	NA	-1047	NM_198298	78455	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	0.085000	0.676617	
mm_62377.1	chr7	100706679	100706879	+	1	NA	NA	NA	77	NM_178764	319604	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0.095000	0.636816	
mm_26343.1	chr3	142547225	142547425	+	1	NA	NA	NA	-12727	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.015000	0.527363	
mm_61677.1	chr7	80993355	80993555	+	1	NA	NA	NA	-229	NM_178707	233410	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	8430405N24|A730014M16Rik|Znf592|mKIAA0211	zinc finger protein 592	protein-coding	0.115000	0.800995	
mm_24978.1	chr3	96829367	96829567	+	1	NA	NA	NA	-116	NM_001163496	54215	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	0.020000	0.537313	
mm_129175.1	chr15	76269753	76269953	-	1	NA	NA	NA	-14	NR_045747	100038659	Mm.448549	NR_045747		Mirt2	ENSMUSG00000075583|Gm10872|Gm24562	myocardial infraction associated transcript 2	ncRNA	0.030000	0.497512	
mm_96439.1	chr11	67321543	67321743	+	1	NA	NA	NA	-5460	NM_001081250	544791	Mm.461064	NM_001081250	ENSMUSG00000060180	Myh13	MyHC-eo	myosin, heavy polypeptide 13, skeletal muscle	protein-coding	0.025000	0.457711	-34(CATTATAAAGCC,+,0.00)
mm_103647.1	chr11	78969268	78969468	-	1	NA	NA	NA	15556	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.025000	0.497512	
mm_60328.1	chr7	44236096	44236296	+	1	NA	NA	NA	-74	NR_029436	70004	Mm.158317	NR_029436	ENSMUSG00000038782	1700028J19Rik	-	RIKEN cDNA 1700028J19 gene	ncRNA	0.005000	0.562189	
mm_64978.1	chr7	16899255	16899455	-	1	NA	NA	NA	-7135	NM_008967	19222	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0.025000	0.512438	-33(CCTTATAAAATC,+,0.00)
mm_166732.1	chr6	122608605	122608805	+	1	NA	NA	NA	1382	NM_008108	14562	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0.010000	0.422886	31(CAGTTTAAAAAG,-,0.00)
mm_29914.1	chr3	131488943	131489143	-	1	NA	NA	NA	-75725	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.010000	0.472637	
mm_124559.1	chr14	122983144	122983344	-	1	NA	NA	NA	17	NM_028651	70551	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	0.135000	0.771144	
mm_63723.1	chr7	130847463	130847663	+	1	NA	NA	NA	-18161	NM_001346515	101476	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.030000	0.527363	
mm_29532.1	chr3	116662443	116662643	-	1	NA	NA	NA	134	NM_008246	15247	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	0.130000	0.716418	
mm_10533.1	chr2	16408603	16408803	+	1	NA	NA	NA	52399	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.005000	0.353234	
mm_150038.1	chr19	29377343	29377543	+	1	NA	NA	NA	10005	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.015000	0.412935	
mm_161199.1	chr13	55445293	55445493	+	1	NA	NA	NA	62	NM_001112711	26385	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	0.205000	0.855721	
mm_46330.1	chr5	100916447	100916647	-	1	NA	NA	NA	70318	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|Gpat3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding	0.020000	0.442786	
mm_123258.1	chr14	61173395	61173595	-	1	NA	NA	NA	35038	NM_172809	50720	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik|mKIAA0730	sacsin	protein-coding	0.060000	0.592040	
mm_45794.1	chr5	87538095	87538295	-	1	NA	NA	NA	0	NM_019878	56362	Mm.23502	NM_019878	ENSMUSG00000029269	Sult1b1	ST1B1|St2b2	sulfotransferase family 1B, member 1	protein-coding	0.005000	0.427861	
mm_146062.1	chr18	69686637	69686837	+	1	NA	NA	NA	-238822	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.010000	0.338308	
mm_98795.1	chr11	96966926	96967126	+	1	NA	NA	NA	10662	NM_030220	78912	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.025000	0.472637	
mm_130452.1	chr15	98543881	98544081	-	1	NA	NA	NA	-9712	NM_001289440	69612	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	0.010000	0.457711	
mm_116075.1	chr13	27693228	27693428	-	1	NA	NA	NA	23409	NM_011120	18814	Mm.3258	NM_011120	ENSMUSG00000021348	Prl7d1	Ghd19|PLF-RP|PRP|Plfr	prolactin family 7, subfamily d, member 1	protein-coding	0.000000	0.452736	
mm_100985.1	chr11	7213720	7213920	-	1	NA	NA	NA	103	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding	0.135000	0.741294	
mm_15771.1	chr2	164332687	164332887	+	1	NA	NA	NA	22	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.020000	0.512438	
mm_170168.1	chr1	75506219	75506419	-	1	NA	NA	NA	133	NM_178884	98733	Mm.236454	NM_178884	ENSMUSG00000026211	Obsl1	AW822216	obscurin-like 1	protein-coding	0.105000	0.721393	
mm_138088.1	chr17	33999669	33999869	+	1	NA	NA	NA	564	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.085000	0.661692	
mm_117725.1	chr13	95525146	95525346	-	1	NA	NA	NA	-6	NM_007974	14063	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	0.075000	0.651741	
mm_1485.1	chr1	71649116	71649316	+	1	NA	NA	NA	4018	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.025000	0.527363	
mm_160321.1	chr7	144838561	144838761	+	1	NA	NA	NA	49	NM_008007	14174	Mm.4947	NM_008007	ENSMUSG00000031074	Fgf3	Fgf-3|Int-2|Int-P	fibroblast growth factor 3	protein-coding	0.100000	0.716418	
mm_142940.1	chr17	56036394	56036594	-	1	NA	NA	NA	143	NM_013664	20405	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0.135000	0.706468	
mm_5502.1	chr1	37418724	37418924	-	1	NA	NA	NA	11279	NM_198006	76178	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	0.005000	0.447761	
mm_29546.1	chr3	116804373	116804573	-	1	NA	NA	NA	3693	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.040000	0.422886	
mm_56273.1	chr6	91029982	91030182	-	1	NA	NA	NA	86744	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.025000	0.482587	
mm_60249.1	chr7	43774545	43774745	+	1	NA	NA	NA	28	NM_001177373	56538	Mm.154276	NM_019974	ENSMUSG00000067616	Klk11	2310015I08Rik|Prss20|TLSP	kallikrein related-peptidase 11	protein-coding	0.020000	0.557214	
mm_147092.1	chr18	35648412	35648612	-	1	NA	NA	NA	855	NM_027222	69816	Mm.27252	NM_027222	ENSMUSG00000024353	Mzb1	2010001M09Rik|AV064572|PACAP|pERp1	marginal zone B and B1 cell-specific protein 1	protein-coding	0.000000	0.616915	
mm_163852.1	chr14	19418248	19418448	+	1	NA	NA	NA	184239	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.348259	
mm_62871.1	chr7	114745431	114745631	+	1	NA	NA	NA	-235	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	0.035000	0.567164	
mm_103667.1	chr11	79059776	79059976	-	1	NA	NA	NA	36279	NR_045873	790910	Mm.440410	NR_045873		Gm11201	ENSMUSG00000072637|OTTMUSG00000000169	predicted gene 11201	ncRNA	0.010000	0.577114	
mm_16761.1	chr2	9877743	9877943	-	1	NA	NA	NA	757	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.020000	0.422886	
mm_164964.1	chr19	6242285	6242485	-	1	NA	NA	NA	717	NM_194348	329015	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0.015000	0.567164	
mm_30657.1	chr4	8915673	8915873	+	1	NA	NA	NA	225367	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.015000	0.472637	71(TACCTTAAAAGG,-,0.00),73(CCTTAAAAGGCA,+,0.00)
mm_17332.1	chr2	26516528	26516728	-	1	NA	NA	NA	12701	NR_132655	102639736		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0.005000	0.562189	
mm_28852.1	chr3	96831993	96832193	-	1	NA	NA	NA	-23	NR_015596	67583	Mm.444284	NR_015596	ENSMUSG00000087223	4930442L01Rik	-	RIKEN cDNA 4930442L01 gene	ncRNA	0.020000	0.477612	9(CCTTTAAGACGT,+,0.00)
mm_11383.1	chr2	31277939	31278139	+	1	NA	NA	NA	32116	NM_019681	14299	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.025000	0.547264	
mm_128694.1	chr15	62092637	62092837	-	1	NA	NA	NA	53480	NR_132746	19296	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	plasmacytoma variant translocation 1	ncRNA	0.010000	0.577114	
mm_23632.1	chr3	66225419	66225619	+	1	NA	NA	NA	5632	NM_008987	19288	Mm.276776	NM_008987	ENSMUSG00000027832	Ptx3	AI607804|TSG-14	pentraxin related gene	protein-coding	0.005000	0.343284	
mm_169127.1	chr13	55246672	55246872	+	1	NA	NA	NA	36990	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.010000	0.432836	
mm_129778.1	chr15	82792833	82793033	-	1	NA	NA	NA	1312	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.010000	0.517413	
mm_79620.1	chr9	58822755	58822955	+	1	NA	NA	NA	-657	NM_001081192	330953	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0.110000	0.741294	-35(GCCCCTTTAAGA,-,0.00),-33(CCCTTTAAGAAG,-,0.00),-32(CCTTTAAGAAGC,+,0.00)
mm_116031.1	chr13	25269943	25270143	-	1	NA	NA	NA	-47	NM_009513	22360	Mm.4766	NM_009513	ENSMUSG00000048978	Nrsn1	Neurensin-1|Neuro-p24|Vmp	neurensin 1	protein-coding	0.125000	0.731343	
mm_130587.1	chr15	99632708	99632908	-	1	NA	NA	NA	18848	NM_001253808	26934	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	0.015000	0.462687	
mm_168792.1	chr12	19387690	19387890	+	1	NA	NA	NA	873280	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.125000	0.746269	
mm_127565.1	chr15	102224616	102224816	+	1	NA	NA	NA	7219	NM_013566	16421	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0.080000	0.686567	
mm_10755.1	chr2	23201839	23202039	+	1	NA	NA	NA	-5537	NM_027635	70981	Mm.314026	NM_027635	ENSMUSG00000026774	4931423N10Rik	-	RIKEN cDNA 4931423N10 gene	protein-coding	0.020000	0.442786	
mm_5509.1	chr1	37488539	37488739	-	1	NA	NA	NA	-34	NR_024017	77633	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.025000	0.497512	
mm_36203.1	chr4	62360438	62360638	-	1	NA	NA	NA	10	NM_001045528	338355	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.050000	0.621891	
mm_83496.1	chr9	45946483	45946683	-	1	NA	NA	NA	-6993	NR_106055	102465659		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.045000	0.621891	
mm_262.1	chr1	20890475	20890675	+	1	NA	NA	NA	-47	NM_028829	74229	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	0.090000	0.736318	
mm_123164.1	chr14	57133502	57133702	-	1	NA	NA	NA	9	NM_001271663	14623	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	0.025000	0.572139	
mm_155818.1	chrX	100572150	100572350	+	1	NA	NA	NA	3	NM_001081136	245533	Mm.77759	NM_001081136	ENSMUSG00000015665	Awat1	Dgat2l3	acyl-CoA wax alcohol acyltransferase 1	protein-coding	0.005000	0.537313	
mm_131221.1	chr16	8856897	8857097	+	1	NA	NA	NA	26897	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.005000	0.308458	
mm_135681.1	chr16	52420168	52420368	-	1	NA	NA	NA	32813	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.025000	0.472637	
mm_124333.1	chr14	103843725	103843925	-	1	NA	NA	NA	-124	NM_001276296	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.050000	0.597015	
mm_29856.1	chr3	130041252	130041452	-	1	NA	NA	NA	19555	NM_207209	99683	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.010000	0.477612	
mm_68371.1	chr7	107801154	107801354	-	1	NA	NA	NA	-75	NM_172908	244199	Mm.99576	NM_172908	ENSMUSG00000048236	Ovch2	9230106D23Rik|Ovtn	ovochymase 2	protein-coding	0.010000	0.398010	
mm_146918.1	chr18	31607424	31607624	-	1	NA	NA	NA	2378	NM_026165	67453	Mm.23896	NM_026165	ENSMUSG00000024259	Slc25a46	1200007B05Rik|AI325987	solute carrier family 25, member 46	protein-coding	0.010000	0.318408	-75(CACTTTTTAAGA,-,0.00),77(TCCTTTAAGAGG,-,0.00),78(CCTTTAAGAGGT,+,0.00)
mm_15949.1	chr2	165948005	165948205	+	1	NA	NA	NA	-44532	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.005000	0.487562	
mm_45463.1	chr5	67847268	67847468	-	1	NA	NA	NA	63	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.130000	0.786070	
mm_126930.1	chr15	91673400	91673600	+	1	NA	NA	NA	276	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.020000	0.537313	
mm_34142.1	chr4	139337998	139338198	+	1	NA	NA	NA	14478	NM_001290810	69902	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	0.025000	0.472637	
mm_159050.1	chr1	186967208	186967408	+	1	NA	NA	NA	-108	NM_033077	110957	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding	0.040000	0.522388	
mm_172017.1	chr6	112702521	112702721	+	1	NA	NA	NA	-5951	NM_001167730	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.015000	0.522388	-17(CCTTTTATAGGC,+,0.00)
mm_137209.1	chr17	24140826	24141026	+	1	NA	NA	NA	668	NM_011062	18607	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	0.040000	0.631841	
mm_33793.1	chr4	134924174	134924374	+	1	NA	NA	NA	649	NM_023665	27981	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.160000	0.686567	
mm_7359.1	chr1	106705734	106705934	-	1	NA	NA	NA	8456	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.005000	0.417910	
mm_125864.1	chr15	75474374	75474574	+	1	NA	NA	NA	25022	NM_001347049	102637705		NM_001347049	ENSMUSG00000093626	Ly6l	Gm20654	lymphocyte antigen 6 complex, locus L	protein-coding	0.010000	0.582090	
mm_40820.1	chr5	72602708	72602908	+	1	NA	NA	NA	-15258	NM_001024147	545758	Mm.332426	NM_001024147	ENSMUSG00000060204	Gm5868	EG545758	predicted gene 5868	protein-coding	0.005000	0.472637	
mm_64134.1	chr7	141194013	141194213	+	1	NA	NA	NA	-17	NM_001172065	70552	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	0.090000	0.651741	
mm_40280.1	chr5	43062691	43062891	+	1	NA	NA	NA	-170672	NM_175937	231207	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.000000	0.467662	
mm_142344.1	chr17	43607289	43607489	-	1	NA	NA	NA	-15880	NR_045444	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.005000	0.447761	
mm_706.1	chr1	40683976	40684176	+	1	NA	NA	NA	2364	NM_001033289	226999	Mm.256414	NM_001033289	ENSMUSG00000026062	Slc9a2	2210416H12Rik|4932415O19Rik|AV333884|NHE2	solute carrier family 9 (sodium/hydrogen exchanger), member 2	protein-coding	0.010000	0.482587	
mm_29828.1	chr3	129726191	129726391	-	1	NA	NA	NA	-1205	NM_001329594	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.030000	0.398010	
mm_120647.1	chr14	70530518	70530718	+	1	NA	NA	NA	-203	NM_145219	213469	Mm.41708	NM_145219	ENSMUSG00000033595	Lgi3	AI841179|AW049851	leucine-rich repeat LGI family, member 3	protein-coding	0.015000	0.512438	
mm_143522.1	chr17	73710295	73710495	-	1	NA	NA	NA	56	NM_027864	71685	Mm.271953	NM_027864	ENSMUSG00000024064	Galnt14	0610033M06Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14	protein-coding	0.125000	0.741294	
mm_31607.1	chr4	58644506	58644706	+	1	NA	NA	NA	-91115	NM_010336	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.000000	0.522388	
mm_106184.1	chr11	116725099	116725299	-	1	NA	NA	NA	-26968	NR_003364	193217	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	0.025000	0.562189	-34(GGGTATTAAAGG,-,0.00)
mm_44244.1	chr5	5346519	5346719	-	1	NA	NA	NA	33632	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.015000	0.437811	
mm_54705.1	chr6	39607568	39607768	-	1	NA	NA	NA	15085	NM_026612	68198	Mm.29415	NM_026612	ENSMUSG00000002416	Ndufb2	1810011O01Rik|8kDa|AGGG|AI325567|CI-AGGG	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2	protein-coding	0.015000	0.323383	
mm_84156.1	chr9	59525361	59525561	-	1	NA	NA	NA	40	NM_178388	73893	Mm.216135	NM_178388	ENSMUSG00000049526	Tmem202	4930425N13Rik	transmembrane protein 202	protein-coding	0.010000	0.442786	
mm_14310.1	chr2	129196503	129196703	+	1	NA	NA	NA	-2170	NM_015747	20515	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.010000	0.482587	
mm_29163.1	chr3	106219380	106219580	-	1	NA	NA	NA	-1	NM_145126	104183	Mm.425140	NM_145126	ENSMUSG00000063779	Chil4	Chi3l4|Ym2	chitinase-like 4	protein-coding	0.000000	0.402985	-33(GTGTATAAAAAG,-,0.00)
mm_18191.1	chr2	45113165	45113365	-	1	NA	NA	NA	14	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.035000	0.552239	
mm_161515.1	chr15	98934336	98934536	-	1	NA	NA	NA	-46	NM_011654	22143	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.105000	0.651741	
mm_20334.1	chr2	127538890	127539090	-	1	NA	NA	NA	2427	NM_178047	192212	Mm.34171	NM_138750	ENSMUSG00000027376	Prom2	AI507243|Prom-rp	prominin 2	protein-coding	0.005000	0.542289	
mm_127606.1	chr15	102445295	102445495	+	1	NA	NA	NA	28	NM_144547	110542	Mm.60331	NM_144547	ENSMUSG00000023047	Amhr2	Misiir|Misrii|Mrii	anti-Mullerian hormone type 2 receptor	protein-coding	0.015000	0.582090	
mm_10932.1	chr2	25467731	25467931	+	1	NA	NA	NA	1918	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.015000	0.552239	
mm_34276.1	chr4	141424424	141424624	+	1	NA	NA	NA	3745	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.005000	0.502488	
mm_99982.1	chr11	114668664	114668864	+	1	NA	NA	NA	-17	NM_001048058	67671	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.135000	0.746269	
mm_6730.1	chr1	82771209	82771409	-	1	NA	NA	NA	-2853	NM_025453	66261	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.025000	0.502488	-34(CGGTATATAAAC,-,0.00)
mm_143888.1	chr17	84380370	84380570	-	1	NA	NA	NA	85738	NM_183021	240174	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.025000	0.497512	
mm_60936.1	chr7	46861357	46861557	+	1	NA	NA	NA	194	NM_013580	16833	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	0.010000	0.577114	
mm_72903.1	chr8	90883970	90884170	+	1	NA	NA	NA	-48179	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.000000	0.393035	
mm_88166.1	chr10	69706563	69706763	+	1	NA	NA	NA	172955	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.005000	0.552239	
mm_39531.1	chr5	21372605	21372805	+	1	NA	NA	NA	32	NM_008013	14190	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.055000	0.616915	-72(CCTTTTCTGGGA,+,0.00),-32(GGCTATTAAAGC,-,0.00)
mm_40745.1	chr5	66745302	66745502	+	1	NA	NA	NA	-438	NM_001001980	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.015000	0.537313	
mm_135747.1	chr16	55923772	55923972	-	1	NA	NA	NA	10976	NM_001159364	74201	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	0.005000	0.402985	-75(CTTTTTCAAGGC,+,0.00)
mm_149883.1	chr19	25376998	25377198	+	1	NA	NA	NA	-128608	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.020000	0.512438	
mm_89083.1	chr10	83562147	83562347	+	1	NA	NA	NA	18306	NM_001033375	319277	Mm.491194	NM_001033375	ENSMUSG00000034560	Washc4	A230046K03Rik|AA589518|Kiaa1033|mKIAA1033	WASH complex subunit 4	protein-coding	0.015000	0.452736	
mm_117750.1	chr13	95897018	95897218	-	1	NA	NA	NA	-5196	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.010000	0.467662	
mm_144456.1	chr18	23395884	23396084	+	1	NA	NA	NA	-19425	NM_010087	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.000000	0.323383	
mm_163496.1	chr12	110985311	110985511	+	1	NA	NA	NA	-6390	NM_175207	74251	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0.020000	0.532338	
mm_161836.1	chr17	84956437	84956637	+	1	NA	NA	NA	-204	NM_001159497	19043	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.035000	0.412935	-41(GAGTTTAAAAAC,-,0.00)
mm_96191.1	chr11	61956714	61956914	+	1	NA	NA	NA	51	NM_001310526	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.110000	0.696517	
mm_96011.1	chr11	59542639	59542839	+	1	NA	NA	NA	53	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.015000	0.462687	
mm_32714.1	chr4	116173295	116173495	+	1	NA	NA	NA	23	NM_001099295	67323	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	0.030000	0.606965	
mm_106097.1	chr11	116198965	116199165	-	1	NA	NA	NA	-20	NM_015729	11430	Mm.356689	NM_015729	ENSMUSG00000020777	Acox1	AOX|Acox|D130055E20Rik|Paox	acyl-Coenzyme A oxidase 1, palmitoyl	protein-coding	0.065000	0.621891	
mm_122289.1	chr14	34541878	34542078	-	1	NA	NA	NA	-19177	NM_030062	78243	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	0.015000	0.582090	
mm_72549.1	chr8	84021268	84021468	+	1	NA	NA	NA	-106	NM_028877	74337	Mm.250943	NM_028877	ENSMUSG00000047986	Palm3	4432412L15Rik|AL024300	paralemmin 3	protein-coding	0.045000	0.646766	
mm_87936.1	chr10	62699276	62699476	+	1	NA	NA	NA	16868	NR_106074	102465987		NR_106074	ENSMUSG00000105329	Mir7215	mmu-mir-7215	microRNA 7215	ncRNA	0.015000	0.422886	
mm_51518.1	chr6	83147394	83147594	+	1	NA	NA	NA	8885	NM_023790	75659	Mm.130665	NM_023790	ENSMUSG00000030032	Wdr54	1700030E05Rik	WD repeat domain 54	protein-coding	0.020000	0.616915	-85(GCCTCTTAGAGC,-,0.00),-84(CCTCTTAGAGCC,+,0.00)
mm_54756.1	chr6	41034282	41034482	-	1	NA	NA	NA	1127	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.472637	-70(CCTCAAATAGTC,+,0.00)
mm_68536.1	chr7	113369261	113369461	-	1	NA	NA	NA	-22	NM_133700	68815	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0.105000	0.676617	
mm_139177.1	chr17	47593360	47593560	+	1	NA	NA	NA	-7	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.115000	0.711443	
mm_121028.1	chr14	79703994	79704194	+	1	NA	NA	NA	1174	NR_045060	73989	Mm.107775	NR_045060		4930452G13Rik	-	RIKEN cDNA 4930452G13 gene	ncRNA	0.025000	0.517413	
mm_153069.1	chr19	32238717	32238917	-	1	NA	NA	NA	-27804	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.015000	0.512438	
mm_123946.1	chr14	73381238	73381438	-	1	NA	NA	NA	3933	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.010000	0.472637	
mm_128464.1	chr15	50809650	50809850	-	1	NA	NA	NA	79299	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.338308	
mm_102326.1	chr11	57801322	57801522	-	1	NA	NA	NA	45	NR_131042	76516	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	0.040000	0.597015	
mm_134735.1	chr16	22899153	22899353	-	1	NA	NA	NA	-4867	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.010000	0.477612	
mm_20270.1	chr2	126676026	126676226	-	1	NA	NA	NA	211	NM_001271470	14391	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.040000	0.452736	
mm_122787.1	chr14	54413936	54414136	-	1	NA	NA	NA	3643	NM_001253679	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.030000	0.601990	
mm_99701.1	chr11	106160034	106160234	+	1	NA	NA	NA	8	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.190000	0.860697	
mm_132858.1	chr16	48310077	48310277	+	1	NA	NA	NA	-97	NM_028615	73703	Mm.27857	NM_028615	ENSMUSG00000072419	Dppa2	2410088E07Rik|C80932|D19Mgi18|ECAT15-2	developmental pluripotency associated 2	protein-coding	0.020000	0.447761	
mm_42412.1	chr5	115203893	115204093	+	1	NA	NA	NA	-9612	NM_001310712	29867	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	0.040000	0.537313	
mm_167796.1	chr9	123924896	123925096	+	1	NA	NA	NA	43696	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.065000	0.666667	
mm_78226.1	chr9	21588494	21588694	+	1	NA	NA	NA	-4128	NM_178619	69773	Mm.39704	NM_178619	ENSMUSG00000048429	Timm29	1810026J23Rik	translocase of inner mitochondrial membrane 29	protein-coding	0.010000	0.631841	
mm_114847.1	chr13	92811705	92811905	+	1	NA	NA	NA	-16987	NM_011582	21828	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	0.005000	0.407960	
mm_121119.1	chr14	101840387	101840587	+	1	NA	NA	NA	-136	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.025000	0.462687	
mm_121955.1	chr14	24429723	24429923	-	1	NA	NA	NA	57223	NM_001081247	218832	Mm.343610	NM_183157	ENSMUSG00000025280	Polr3a	9330175N20Rik|BC053071|RPC1|RPC155	polymerase (RNA) III (DNA directed) polypeptide A	protein-coding	0.000000	0.492537	-34(GGGTATAAAAGC,-,0.00)
mm_8247.1	chr1	138614319	138614519	-	1	NA	NA	NA	5338	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.005000	0.442786	
mm_1307.1	chr1	64927618	64927818	+	1	NA	NA	NA	29106	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.010000	0.472637	
mm_3945.1	chr1	163929694	163929894	+	1	NA	NA	NA	29	NM_028776	240880	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0.045000	0.567164	
mm_135148.1	chr16	35857483	35857683	-	1	NA	NA	NA	13799	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.005000	0.373134	30(GACTATTTAAGG,-,0.00),32(CTATTTAAGGAC,+,0.00)
mm_165942.1	chr4	79737098	79737298	-	1	NA	NA	NA	-1097015	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.000000	0.333333	
mm_151122.1	chr19	47865477	47865677	+	1	NA	NA	NA	32	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.080000	0.626866	
mm_90209.1	chr10	120634768	120634968	+	1	NA	NA	NA	-130864	NR_038000	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.000000	0.422886	
mm_22276.1	chr2	178635728	178635928	-	1	NA	NA	NA	205313	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.020000	0.572139	-38(GGCTCTATAAAA,-,0.00),-36(CTCTATAAAAGG,-,0.00)
mm_93785.1	chr10	120476827	120477027	-	1	NA	NA	NA	-458	NM_010441	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0.085000	0.651741	
mm_95217.1	chr11	43838844	43839044	+	1	NA	NA	NA	-2455	NM_007416	11548	Mm.39086	NM_007416	ENSMUSG00000050541	Adra1b	[a]1b	adrenergic receptor, alpha 1b	protein-coding	0.010000	0.343284	
mm_63356.1	chr7	126983380	126983580	+	1	NA	NA	NA	7566	NM_001347656	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.010000	0.447761	
mm_134185.1	chr16	10963282	10963482	-	1	NA	NA	NA	29739	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.030000	0.572139	
mm_15766.1	chr2	164316695	164316895	+	1	NA	NA	NA	44	NM_013679	20945	Mm.439686	NM_013679	ENSMUSG00000017000	Svs6	MSVSP99|Svp6	seminal vesicle secretory protein 6	protein-coding	0.010000	0.462687	
mm_103830.1	chr11	83020031	83020231	-	1	NA	NA	NA	591	NM_001167743	276950	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0.045000	0.582090	
mm_32633.1	chr4	115000082	115000282	+	1	NA	NA	NA	64	NM_001304555	20460	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	0.105000	0.681592	
mm_109036.1	chr12	104101065	104101265	+	1	NA	NA	NA	52	NM_172953	268591	Mm.73172	NM_172953	ENSMUSG00000041550	Serpina5	4933415L04|PAI-3|Pci	serine (or cysteine) peptidase inhibitor, clade A, member 5	protein-coding	0.025000	0.512438	-91(CCTTTTATCGGG,+,0.00)
mm_133412.1	chr16	85071985	85072185	+	1	NA	NA	NA	99874	NR_045889	100038614	Mm.441351	NR_045889		Gm10791	ENSMUSG00000074933	predicted gene 10791	ncRNA	0.025000	0.368159	
mm_117729.1	chr13	95604601	95604801	-	1	NA	NA	NA	13732	NM_010169	14062	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	0.060000	0.567164	
mm_137232.1	chr17	24414566	24414766	+	1	NA	NA	NA	-9	NM_001080127	19826	Mm.1951	NM_009070	ENSMUSG00000034681	Rnps1	-	ribonucleic acid binding protein S1	protein-coding	0.095000	0.601990	
mm_98903.1	chr11	98022978	98023178	+	1	NA	NA	NA	-451	NM_001282978	12295	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	0.030000	0.616915	
mm_86705.1	chr10	18844872	18845072	+	1	NA	NA	NA	-99	NM_022032	64058	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	0.095000	0.741294	
mm_69236.1	chr7	127708763	127708963	-	1	NA	NA	NA	-97	NM_001347652	12055	Mm.89667	NM_009746	ENSMUSG00000030814	Bcl7c	C230096E12Rik	B cell CLL/lymphoma 7C	protein-coding	0.130000	0.791045	
mm_151852.1	chr19	5796333	5796533	-	1	NA	NA	NA	-452	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.015000	0.522388	75(CACCAGAAAAGG,-,0.00)
mm_147653.1	chr18	60502371	60502571	-	1	NA	NA	NA	-488	NM_134133	106878	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.015000	0.497512	
mm_106926.1	chr12	8351474	8351674	+	1	NA	NA	NA	38141	NM_021429	58240	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.005000	0.527363	
mm_103490.1	chr11	76541795	76541995	-	1	NA	NA	NA	29489	NM_198895	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.005000	0.457711	74(CAGCATTAAAGC,-,0.00)
mm_120179.1	chr14	61174793	61174993	+	1	NA	NA	NA	36436	NM_172809	50720	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik|mKIAA0730	sacsin	protein-coding	0.010000	0.497512	
mm_141089.1	chr17	25971986	25972186	-	1	NA	NA	NA	-6581	NM_015830	50817	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	0.005000	0.348259	-41(CTCCTTTTAAGC,-,0.00),-39(CCTTTTAAGCAG,+,0.00)
mm_146641.1	chr18	10735189	10735389	-	1	NA	NA	NA	9664	NM_144860	225164	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0.005000	0.378109	
mm_42398.1	chr5	114942094	114942294	+	1	NA	NA	NA	-8	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.065000	0.592040	
mm_118401.1	chr13	119408070	119408270	-	1	NA	NA	NA	841	NM_008710	18115	Mm.132584	NM_008710	ENSMUSG00000025453	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.015000	0.552239	
mm_147514.1	chr18	52517583	52517783	-	1	NA	NA	NA	12038	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.025000	0.517413	
mm_131476.1	chr16	17070230	17070430	+	1	NA	NA	NA	191	NM_001291047	106369	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee-like 1 (Drosophila)	protein-coding	0.145000	0.756219	
mm_142036.1	chr17	35258180	35258380	-	1	NA	NA	NA	-4814	NM_010380	14964	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	0.030000	0.522388	
mm_124073.1	chr14	78610075	78610275	-	1	NA	NA	NA	19115	NM_001253766	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.010000	0.393035	
mm_3507.1	chr1	150107129	150107329	+	1	NA	NA	NA	7198	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.000000	0.313433	
mm_163547.1	chr13	20660480	20660680	-	1	NA	NA	NA	-133533	NM_001281854	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.015000	0.393035	
mm_170186.1	chr17	62882420	62882620	-	1	NA	NA	NA	-1203	NM_010109	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.050000	0.552239	
mm_88358.1	chr10	75936183	75936383	+	1	NA	NA	NA	710	NM_175329	103172	Mm.333849	NM_175329	ENSMUSG00000049422	Chchd10	1620401E04Rik|AI267078|Ndg2	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding	0.070000	0.661692	
mm_46739.1	chr5	110810024	110810224	-	1	NA	NA	NA	-43	NM_001347394	22241	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	0.120000	0.711443	
mm_170808.1	chr2	175931028	175931228	-	1	NA	NA	NA	-28	NM_001177406	100303732	Mm.484983	NM_001177404	ENSMUSG00000095199	Zfp967	Gm14431|OTTMUSG00000016608	zinc finger protein 967	protein-coding	0.015000	0.492537	
mm_91180.1	chr10	20891435	20891635	-	1	NA	NA	NA	-61012	NM_026203	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.020000	0.407960	
mm_21731.1	chr2	164743068	164743268	-	1	NA	NA	NA	99	NM_027961	71856	Mm.330770	NM_027961	ENSMUSG00000076434	Wfdc3	1700015L13Rik|1700127F16Rik	WAP four-disulfide core domain 3	protein-coding	0.010000	0.497512	
mm_451.1	chr1	36068558	36068758	+	1	NA	NA	NA	258	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.150000	0.771144	
mm_140060.1	chr17	74670192	74670392	+	1	NA	NA	NA	-47458	NM_152817	74196	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0.045000	0.592040	
mm_53310.1	chr6	129181828	129182028	+	1	NA	NA	NA	1313	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.000000	0.417910	
mm_17820.1	chr2	33781608	33781808	-	1	NA	NA	NA	-24108	NR_045729	320482	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0.000000	0.412935	
mm_57424.1	chr6	124913940	124914140	-	1	NA	NA	NA	-2335	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.015000	0.631841	
mm_72652.1	chr8	84842401	84842601	+	1	NA	NA	NA	-1836	NM_009010	19358	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.005000	0.447761	
mm_57423.1	chr6	124913914	124914114	-	1	NA	NA	NA	-2309	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.010000	0.606965	
mm_146337.1	chr18	82475042	82475242	+	1	NA	NA	NA	19	NM_001025245	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.130000	0.766169	
mm_151564.1	chr19	60712772	60712972	+	1	NA	NA	NA	-43115	NM_178421	332397	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos homolog 1 (Drosophila)	protein-coding	0.005000	0.502488	
mm_139272.1	chr17	48146283	48146483	+	1	NA	NA	NA	-76	NM_001177896	328829	Mm.466999	NM_177824	ENSMUSG00000073386	9830107B12Rik	Trem5	RIKEN cDNA 9830107B12 gene	protein-coding	0.005000	0.497512	
mm_132505.1	chr16	36955227	36955427	+	1	NA	NA	NA	20344	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.045000	0.547264	
mm_147231.1	chr18	38211876	38212076	-	1	NA	NA	NA	-2214	NM_029357	75599	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.140000	0.796020	
mm_23373.1	chr3	55503053	55503253	+	1	NA	NA	NA	41395	NM_001195540	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.000000	0.398010	
mm_117123.1	chr13	60897347	60897547	-	1	NA	NA	NA	0	NM_007797	13025	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	0.010000	0.537313	
mm_60178.1	chr7	42270997	42271197	+	1	NA	NA	NA	11044	NM_001105058	637873	Mm.469899	NM_001105058	ENSMUSG00000090967	Vmn2r61	Casr-rs2|EG637873|Gprc2a-rs2	vomeronasal 2, receptor 61	protein-coding	0.000000	0.417910	
mm_91174.1	chr10	20724913	20725113	-	1	NA	NA	NA	65	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.055000	0.651741	
mm_81588.1	chr9	110476892	110477092	+	1	NA	NA	NA	-2	NM_001163569	16578	Mm.42170	NM_010628	ENSMUSG00000032489	Kif9	-	kinesin family member 9	protein-coding	0.060000	0.567164	
mm_119183.1	chr14	32201866	32202066	+	1	NA	NA	NA	-5	NM_011960	26430	Mm.15962	NM_011960	ENSMUSG00000021911	Parg	AI413217	poly (ADP-ribose) glycohydrolase	protein-coding	0.120000	0.696517	
mm_171620.1	chr4	153152949	153153149	+	1	NA	NA	NA	329781	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	0.000000	0.512438	
mm_76295.1	chr8	84203424	84203624	-	1	NA	NA	NA	-4994	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.045000	0.616915	
mm_146542.1	chr18	5593835	5594035	-	1	NA	NA	NA	-1498	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	0.015000	0.407960	
mm_131174.1	chr16	7069736	7069936	+	1	NA	NA	NA	1	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.030000	0.497512	
mm_121270.1	chr14	103346972	103347172	+	1	NA	NA	NA	-272	NM_207215	105689	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.050000	0.611940	
mm_135485.1	chr16	46010296	46010496	-	1	NA	NA	NA	17	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.055000	0.661692	
mm_142354.1	chr17	43630212	43630412	-	1	NA	NA	NA	-13	NM_001161367	210510	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	0.115000	0.726368	
mm_118699.1	chr14	22143032	22143232	+	1	NA	NA	NA	123420	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.268657	
mm_135472.1	chr16	45887409	45887609	-	1	NA	NA	NA	-43131	NM_001252442	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology like domain, family B, member 2	protein-coding	0.015000	0.502488	
mm_106712.1	chr12	3826485	3826685	+	1	NA	NA	NA	19425	NM_001271753	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.010000	0.452736	22(CTCTTTAAACCC,+,0.00)
mm_99867.1	chr11	109397490	109397690	+	1	NA	NA	NA	-28356	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.005000	0.422886	
mm_169592.1	chr15	30447542	30447742	-	1	NA	NA	NA	275049	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.065000	0.651741	
mm_169560.1	chr15	12118642	12118842	+	1	NA	NA	NA	891	NM_011767	22763	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.105000	0.716418	
mm_169284.1	chr13	97137770	97137970	-	1	NA	NA	NA	56	NM_021552	59050	Mm.390634	NM_021552	ENSMUSG00000060739	Nsa2	5730427N09Rik|LNR42|Nsa2p|Tinp1|Yr29	NSA2 ribosome biogenesis homolog	protein-coding	0.075000	0.572139	-14(CCTTCTTAAAGG,-,0.00)
mm_15812.1	chr2	164501409	164501609	+	1	NA	NA	NA	3984	NM_133779	78928	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	0.010000	0.492537	
mm_51321.1	chr6	72314807	72315007	+	1	NA	NA	NA	10297	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.000000	0.452736	
mm_164821.1	chr18	35562244	35562444	+	1	NA	NA	NA	186	NM_010771	17184	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0.100000	0.696517	
mm_62154.1	chr7	97138418	97138618	+	1	NA	NA	NA	56767	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.000000	0.427861	
mm_99505.1	chr11	103042889	103043089	+	1	NA	NA	NA	14427	NM_008707	18107	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.010000	0.522388	
mm_27623.1	chr3	59344257	59344457	-	1	NA	NA	NA	-101	NM_001162884	242050	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.045000	0.626866	
mm_92515.1	chr10	78464816	78465016	-	1	NA	NA	NA	32	NM_172134	216134	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.095000	0.661692	
mm_156722.1	chrX	159839962	159840162	+	1	NA	NA	NA	-406	NM_001135728	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.010000	0.343284	
mm_59595.1	chr7	28137491	28137691	+	1	NA	NA	NA	8125	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.040000	0.547264	
mm_64985.1	chr7	16915950	16916150	-	1	NA	NA	NA	7982	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.025000	0.532338	41(CCCTTTATGCCC,+,0.00),49(GCCCCTTAAAAC,-,0.00)
mm_162880.1	chr10	99693027	99693227	+	1	NA	NA	NA	-51207	NR_038018	100417125	Mm.391428	NR_038018		Gm18409	-	mediator of cell motility 1 pseudogene	pseudo	0.005000	0.328358	
mm_124928.1	chr15	12179558	12179758	+	1	NA	NA	NA	8166	NR_035443	100316684		NR_035443	ENSMUSG00000084592	Mir1898	Mirn1898|mmu-mir-1898	microRNA 1898	ncRNA	0.010000	0.482587	
mm_107299.1	chr12	30910468	30910668	+	1	NA	NA	NA	1044	NM_021330	11431	Mm.359831	NM_021330	ENSMUSG00000044573	Acp1	4632432E04Rik|AI427468|Acp-1|LMW-PTP|Lmptp	acid phosphatase 1, soluble	protein-coding	0.015000	0.527363	
mm_93467.1	chr10	111010170	111010370	-	1	NA	NA	NA	-204	NM_172554	320150	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0.145000	0.805970	
mm_118180.1	chr13	107021667	107021867	-	1	NA	NA	NA	347	NM_001145779	16563	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	0.100000	0.701493	
mm_70109.1	chr7	142664708	142664908	-	1	NA	NA	NA	2008	NM_001315488	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.010000	0.577114	
mm_88965.1	chr10	81394924	81395124	+	1	NA	NA	NA	1960	NM_001099917	72273	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.005000	0.562189	
mm_70506.1	chr8	12915823	12916023	+	1	NA	NA	NA	30	NM_178076	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.060000	0.606965	
mm_61389.1	chr7	73105251	73105451	+	1	NA	NA	NA	-3283	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	0.005000	0.467662	
mm_49907.1	chr6	38983232	38983432	+	1	NA	NA	NA	64346	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.025000	0.487562	
mm_231.1	chr1	17946902	17947102	+	1	NA	NA	NA	190049	NM_030033	78081	Mm.319913	NM_030033	ENSMUSG00000025774	Crisp4	9230112K08Rik	cysteine-rich secretory protein 4	protein-coding	0.005000	0.412935	
mm_154960.1	chrX	36874260	36874460	+	1	NA	NA	NA	65	NM_019668	22209	Mm.395649	NM_019668	ENSMUSG00000016308	Ube2a	HHR6A|HR6A|Mhr6a	ubiquitin-conjugating enzyme E2A	protein-coding	0.130000	0.726368	
mm_127047.1	chr15	96642494	96642694	+	1	NA	NA	NA	-251	NM_001166456	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.115000	0.681592	
mm_135602.1	chr16	51929915	51930115	-	1	NA	NA	NA	-101534	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.010000	0.457711	
mm_79698.1	chr9	60837781	60837981	+	1	NA	NA	NA	43333	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.025000	0.527363	
mm_59336.1	chr7	25463359	25463559	+	1	NA	NA	NA	14166	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.005000	0.437811	
mm_28826.1	chr3	96293869	96294069	-	1	NA	NA	NA	0	NM_010186	14129	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0.000000	0.472637	
mm_146367.1	chr18	82584472	82584672	+	1	NA	NA	NA	30064	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.030000	0.557214	16(CCCCCTAAAGAG,-,0.00)
mm_65473.1	chr7	25477521	25477721	-	1	NA	NA	NA	4	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.005000	0.587065	
mm_147135.1	chr18	36280882	36281082	-	1	NA	NA	NA	-180	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.170000	0.786070	
mm_64311.1	chr7	141864490	141864690	+	1	NA	NA	NA	25518	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.025000	0.562189	
mm_84915.1	chr9	80012753	80012953	-	1	NA	NA	NA	-34971	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.020000	0.407960	
mm_79711.1	chr9	61372271	61372471	+	1	NA	NA	NA	5	NM_001083927	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.075000	0.567164	
mm_138683.1	chr17	35916855	35917055	+	1	NA	NA	NA	-241	NM_001163818	52040	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	0.120000	0.631841	-4(GGGTATAAAAGA,-,0.00)
mm_5792.1	chr1	51915830	51916030	-	1	NA	NA	NA	48	NM_001290982	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.150000	0.766169	
mm_52135.1	chr6	97950919	97951119	+	1	NA	NA	NA	21202	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.437811	
mm_3408.1	chr1	144004294	144004494	+	1	NA	NA	NA	-245	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.085000	0.621891	
mm_88795.1	chr10	80676689	80676889	+	1	NA	NA	NA	-496	NM_021462	17347	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.065000	0.641791	
mm_167485.1	chr8	129253133	129253333	+	1	NA	NA	NA	-10397	NM_001346808	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	0.005000	0.432836	
mm_13826.1	chr2	119240539	119240739	+	1	NA	NA	NA	3279	NM_016907	20732	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	0.005000	0.427861	
mm_134105.1	chr16	9995289	9995489	-	1	NA	NA	NA	-2856	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.090000	0.661692	
mm_73478.1	chr8	106935648	106935848	+	1	NA	NA	NA	-2	NM_009229	20650	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0.090000	0.721393	
mm_161095.1	chr12	91786336	91786536	-	1	NA	NA	NA	0	NM_175367	108800	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.020000	0.592040	
mm_101785.1	chr11	45955088	45955288	-	1	NA	NA	NA	0	NM_001290737	66628	Mm.269083	NM_001080969	ENSMUSG00000011254	Thg1l	-	tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	protein-coding	0.075000	0.552239	51(ATATTTAAAAGG,-,0.00)
mm_66751.1	chr7	46712513	46712713	-	1	NA	NA	NA	-1962	NM_030233	78935	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.025000	0.542289	
mm_97271.1	chr11	75765281	75765481	+	1	NA	NA	NA	-30428	NR_136933	102641247	Mm.411386	NR_136932		Gm12339	OTTMUSG00000006218	predicted gene 12339	ncRNA	0.035000	0.527363	
mm_48660.1	chr5	145879765	145879965	-	1	NA	NA	NA	-11	NM_007818	13112	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	0.005000	0.507463	
mm_86664.1	chr10	17919213	17919413	+	1	NA	NA	NA	28754	NM_001033432	380629	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.000000	0.497512	
mm_116898.1	chr13	55401092	55401292	-	1	NA	NA	NA	1544	NM_011392	20505	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	0.015000	0.572139	
mm_24443.1	chr3	90604551	90604751	+	1	NA	NA	NA	881	NM_011311	20198	Mm.3925	NM_011311	ENSMUSG00000001020	S100a4	18A2|42a|Capl|FSp1|Mts1|PeL98|metastasin|pk9a	S100 calcium binding protein A4	protein-coding	0.015000	0.577114	
mm_154859.1	chrX	20658330	20658530	+	1	NA	NA	NA	-74	NM_001276317	22201	Mm.1104	NM_009457	ENSMUSG00000001924	Uba1	A1S9|Sbx|Ube-1|Ube1x	ubiquitin-like modifier activating enzyme 1	protein-coding	0.070000	0.597015	
mm_2659.1	chr1	125677126	125677326	+	1	NA	NA	NA	230	NM_027677	71111	Mm.32727	NM_027677	ENSMUSG00000026343	Gpr39	4933415E13Rik	G protein-coupled receptor 39	protein-coding	0.040000	0.562189	
mm_78842.1	chr9	44326950	44327150	+	1	NA	NA	NA	205	NM_007875	13478	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	0.080000	0.656716	
mm_4451.1	chr1	172632970	172633170	+	1	NA	NA	NA	-96	NM_026725	68440	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	0.065000	0.626866	
mm_51926.1	chr6	91272007	91272207	+	1	NA	NA	NA	59343	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.005000	0.512438	
mm_56040.1	chr6	86684420	86684620	-	1	NA	NA	NA	-29	NM_025665	66618	Mm.182650	NM_025665	ENSMUSG00000001158	Snrnp27	2610209M04Rik|AI449063|AU022368|Ry1	small nuclear ribonucleoprotein 27 (U4/U6.U5)	protein-coding	0.085000	0.621891	
mm_138952.1	chr17	44134718	44134918	+	1	NA	NA	NA	-29010	NM_199016	224794	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90|mKIAA0879	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	0.035000	0.502488	
mm_2706.1	chr1	128038424	128038624	+	1	NA	NA	NA	63947	NM_027678	226409	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0.045000	0.477612	
mm_156506.1	chrX	146962411	146962611	+	1	NA	NA	NA	-2	NM_008312	15560	Mm.439670	NM_008312	ENSMUSG00000041380	Htr2c	5-HT2C|5-HT2cR|5-HTR2C|5HT1c|Htr1c|SR1	5-hydroxytryptamine (serotonin) receptor 2C	protein-coding	0.010000	0.542289	
mm_81098.1	chr9	106429292	106429492	+	1	NA	NA	NA	-19	NM_001324533	19944	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	0.040000	0.522388	15(CCCTTTCTAGGC,+,0.00)
mm_29276.1	chr3	107554955	107555155	-	1	NA	NA	NA	18	NM_026261	67591	Mm.55982	NM_026261	ENSMUSG00000055891	Ubl4b	4930522D07Rik	ubiquitin-like 4B	protein-coding	0.000000	0.542289	
mm_42678.1	chr5	119686761	119686961	+	1	NA	NA	NA	4357	NR_040416	433944	Mm.491053	NR_040416	ENSMUSG00000086847	Tbx3os2	Gm16065|OTTMUSG00000029666	T-box 3, opposite strand 2	ncRNA	0.015000	0.457711	73(TACTATATAAAC,-,0.00)
mm_107533.1	chr12	40555607	40555807	+	1	NA	NA	NA	109654	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.005000	0.383085	
mm_124310.1	chr14	103154076	103154276	-	1	NA	NA	NA	-54610	NM_001347600	50789	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.020000	0.368159	
mm_56727.1	chr6	115661640	115661840	-	1	NA	NA	NA	14895	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.005000	0.447761	
mm_126753.1	chr15	85772138	85772338	+	1	NA	NA	NA	36462	NM_011144	19013	Mm.212789	NM_011144	ENSMUSG00000022383	Ppara	4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar	peroxisome proliferator activated receptor alpha	protein-coding	0.020000	0.412935	
mm_27724.1	chr3	69004387	69004587	-	1	NA	NA	NA	83	NM_026641	68259	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	0.055000	0.527363	
mm_44194.1	chr5	3595995	3596195	-	1	NA	NA	NA	29	NM_001293806	71382	Mm.379196	NM_027777	ENSMUSG00000005907	Pex1	5430414H02Rik|E330005K07Rik|ZWS1	peroxisomal biogenesis factor 1	protein-coding	0.080000	0.601990	
mm_83530.1	chr9	46230183	46230383	-	1	NA	NA	NA	1653	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.050000	0.597015	
mm_39290.1	chr5	4038892	4039092	+	1	NA	NA	NA	65705	NM_020010	13121	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	0.025000	0.442786	
mm_165454.1	chr2	157794129	157794329	-	1	NA	NA	NA	56828	NM_025680	66642	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	0.010000	0.487562	
mm_12362.1	chr2	69749891	69750091	+	1	NA	NA	NA	26903	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.035000	0.427861	
mm_101816.1	chr11	46389417	46389617	-	1	NA	NA	NA	-2	NM_001281965	16428	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	0.030000	0.522388	
mm_45785.1	chr5	87337038	87337238	-	1	NA	NA	NA	57	NM_028094	72094	Mm.482739	NM_028094	ENSMUSG00000035780	Ugt2a3	2010321J07Rik	UDP glucuronosyltransferase 2 family, polypeptide A3	protein-coding	0.020000	0.437811	
mm_141603.1	chr17	32786987	32787187	-	1	NA	NA	NA	460	NM_001346705	208292	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	0.010000	0.353234	
mm_6300.1	chr1	71307412	71307612	-	1	NA	NA	NA	107398	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding	0.005000	0.402985	
mm_149907.1	chr19	25610470	25610670	+	1	NA	NA	NA	33	NM_177360	240590	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	0.075000	0.711443	
mm_145791.1	chr18	65244196	65244396	+	1	NA	NA	NA	-4565	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.030000	0.472637	-49(ACTTTTAAACCC,+,0.00),-33(TCCCATAAAGGG,-,0.00),-10(AGGCCTAAAAGC,-,0.00)
mm_116137.1	chr13	29325617	29325817	-	1	NA	NA	NA	309462	NR_045075	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0.005000	0.358209	
mm_25835.1	chr3	129202431	129202631	+	1	NA	NA	NA	2653	NM_001042504	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.025000	0.348259	
mm_114267.1	chr13	58128547	58128747	+	1	NA	NA	NA	-91	NM_029872	77134	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	0.170000	0.781095	
mm_4905.1	chr1	189879835	189880035	+	1	NA	NA	NA	42353	NM_026796	226830	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.005000	0.522388	
mm_130556.1	chr15	99135997	99136197	-	1	NA	NA	NA	9252	NM_139140	72572	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.025000	0.537313	
mm_166272.1	chr5	90490573	90490773	+	1	NA	NA	NA	-41	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.015000	0.437811	31(GGATATAAAAGG,-,0.00)
mm_142908.1	chr17	52349918	52350118	-	1	NA	NA	NA	-252691	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.010000	0.462687	
mm_38672.1	chr4	144786459	144786659	-	1	NA	NA	NA	24	NM_001126316	329993	Mm.297407	NM_001126316	ENSMUSG00000078504	Gm438	-	predicted gene 438	protein-coding	0.000000	0.522388	
mm_64208.1	chr7	141475348	141475548	+	1	NA	NA	NA	212	NM_053082	64540	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.145000	0.721393	
mm_128511.1	chr15	53327005	53327205	-	1	NA	NA	NA	19078	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.015000	0.398010	-56(TTTTTTAAAGCC,+,0.00),-7(TTTTTTAAAGCA,+,0.00)
mm_21832.1	chr2	165407704	165407904	-	1	NA	NA	NA	-7410	NM_029021	74614	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	0.010000	0.562189	
mm_131694.1	chr16	20693237	20693437	+	1	NA	NA	NA	-1720	NM_133778	78408	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0.095000	0.731343	
mm_130439.1	chr15	98480572	98480772	-	1	NA	NA	NA	2011	NM_010679	16770	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0.015000	0.567164	
mm_76554.1	chr8	88361859	88362059	-	1	NA	NA	NA	232	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.130000	0.766169	
mm_57942.1	chr6	134792404	134792604	-	1	NA	NA	NA	124	NM_130447	70686	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	0.060000	0.577114	
mm_171343.1	chr4	104262678	104262878	+	1	NA	NA	NA	-104760	NR_104385	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding	0.060000	0.527363	
mm_165624.1	chr3	65108805	65109005	+	1	NA	NA	NA	-463	NM_010597	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.010000	0.517413	6(CCTTTTCAACTC,+,0.00)
mm_114885.1	chr13	94285385	94285585	+	1	NA	NA	NA	-204	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.120000	0.761194	
mm_161300.1	chr14	30714624	30714824	+	1	NA	NA	NA	-125	NM_019460	54650	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.020000	0.542289	-77(TTCTCTAAAAGA,-,0.00)
mm_145994.1	chr18	68340295	68340495	+	1	NA	NA	NA	2792	NM_013596	17203	Mm.8003	NM_013596	ENSMUSG00000007480	Mc5r	-	melanocortin 5 receptor	protein-coding	0.025000	0.412935	
mm_6080.1	chr1	62735850	62736050	-	1	NA	NA	NA	32633	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.005000	0.452736	
mm_157538.1	chrX	51204682	51204882	-	1	NA	NA	NA	1208	NM_001310515	171170	Mm.295324	NM_134163	ENSMUSG00000036109	Mbnl3	A530038J18Rik|AI661274|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL	muscleblind-like 3 (Drosophila)	protein-coding	0.050000	0.562189	
mm_89074.1	chr10	82987111	82987311	+	1	NA	NA	NA	1714	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.030000	0.412935	
mm_54879.1	chr6	42692977	42693177	-	1	NA	NA	NA	-18	NM_029930	77574	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding	0.070000	0.641791	
mm_134106.1	chr16	9995328	9995528	-	1	NA	NA	NA	-2895	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.110000	0.691542	
mm_115915.1	chr13	23465805	23466005	-	1	NA	NA	NA	-4	NM_013483	12231	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0.010000	0.527363	-65(ATGTTTAAAAGG,-,0.00)
mm_98598.1	chr11	95825069	95825269	+	1	NA	NA	NA	669	NM_153104	237928	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.020000	0.606965	
mm_128356.1	chr15	39944517	39944717	-	1	NA	NA	NA	-623	NM_001347036	239393	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0.025000	0.552239	-77(CACTTTAAAAAG,-,0.00)
mm_11604.1	chr2	33805765	33805965	+	1	NA	NA	NA	49	NR_045729	320482	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0.040000	0.537313	-86(CGGCTTATAAAG,-,0.00),-84(GCTTATAAAGCC,+,0.00)
mm_135601.1	chr16	51736143	51736343	-	1	NA	NA	NA	-295306	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.000000	0.233831	
mm_132078.1	chr16	30139304	30139504	+	1	NA	NA	NA	74047	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hairy and enhancer of split 1 (Drosophila)	protein-coding	0.025000	0.432836	
mm_9832.1	chr1	183524259	183524459	-	1	NA	NA	NA	105111	NM_001308052	78772	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0.030000	0.462687	
mm_61258.1	chr7	66060503	66060703	+	1	NA	NA	NA	267	NM_021336	68981	Mm.22362	NM_021336	ENSMUSG00000030512	Snrpa1	1500015N06Rik	small nuclear ribonucleoprotein polypeptide A'	protein-coding	0.105000	0.666667	
mm_20563.1	chr2	131080318	131080518	-	1	NA	NA	NA	6347	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.030000	0.592040	
mm_155016.1	chrX	41954283	41954483	+	1	NA	NA	NA	-42482	NM_001033422	331401	Mm.259498	NM_001033422	ENSMUSG00000037475	Thoc2	6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2	THO complex 2	protein-coding	0.000000	0.462687	
mm_5568.1	chr1	38897972	38898172	-	1	NA	NA	NA	88	NM_145142	98388	Mm.260054	NM_145142	ENSMUSG00000026080	Chst10	AI507003|AU041319|Hnk-1st|ST	carbohydrate sulfotransferase 10	protein-coding	0.140000	0.761194	
mm_38554.1	chr4	141623720	141623920	-	1	NA	NA	NA	14	NM_001013780	384071	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	0.000000	0.601990	
mm_167230.1	chr8	13414204	13414404	+	1	NA	NA	NA	9223	NM_011881	24013	Mm.257501	NM_011881	ENSMUSG00000031450	Grk1	Gprk1|Rhok|Rk	G protein-coupled receptor kinase 1	protein-coding	0.025000	0.582090	
mm_143400.1	chr17	70753356	70753556	-	1	NA	NA	NA	93321	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.010000	0.482587	
mm_68846.1	chr7	126364840	126365040	-	1	NA	NA	NA	3105	NR_106025	102466797		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.000000	0.542289	
mm_34707.1	chr4	152115923	152116123	+	1	NA	NA	NA	89	NM_001291010	85030	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0.075000	0.686567	
mm_97763.1	chr11	81985570	81985770	+	1	NA	NA	NA	-17274	NM_001034013	11418	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	0.010000	0.487562	
mm_23644.1	chr3	67374079	67374279	+	1	NA	NA	NA	82	NM_001039543	17349	Mm.10414	NM_010801	ENSMUSG00000048416	Mlf1	HLS7	myeloid leukemia factor 1	protein-coding	0.135000	0.696517	
mm_151245.1	chr19	53903156	53903356	+	1	NA	NA	NA	-95	NM_001168492	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.125000	0.721393	
mm_119792.1	chr14	54194129	54194329	+	1	NA	NA	NA	59700	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.542289	-32(ACCTCTTTAAGC,-,0.00)
mm_144369.1	chr18	20510160	20510360	+	1	NA	NA	NA	-14	NM_030596	13512	Mm.106811	NM_030596	ENSMUSG00000056632	Dsg3	bal	desmoglein 3	protein-coding	0.005000	0.542289	
mm_118482.1	chr14	12045947	12046147	+	1	NA	NA	NA	-143896	NM_001347593	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.020000	0.422886	18(ACGTTTTAAAGC,-,0.00)
mm_57354.1	chr6	124756903	124757103	-	1	NA	NA	NA	-516	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.080000	0.716418	
mm_47439.1	chr5	123181549	123181749	-	1	NA	NA	NA	1037	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.005000	0.616915	
mm_107472.1	chr12	37880075	37880275	+	1	NA	NA	NA	-530	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	0.020000	0.552239	
mm_34047.1	chr4	138221502	138221702	+	1	NA	NA	NA	4475	NM_001122897	15441	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	0.015000	0.462687	
mm_94911.1	chr11	29374479	29374679	+	1	NA	NA	NA	407	NM_176841	108686	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0.020000	0.398010	
mm_80810.1	chr9	96478253	96478453	+	1	NA	NA	NA	322	NM_011279	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.100000	0.721393	
mm_54599.1	chr6	38306204	38306404	-	1	NA	NA	NA	-7045	NM_172467	209032	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	0.025000	0.452736	
mm_46642.1	chr5	108548747	108548947	-	1	NA	NA	NA	1180	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.015000	0.577114	34(GCATCTAAAAGC,-,0.00)
mm_125019.1	chr15	25655051	25655251	+	1	NA	NA	NA	32601	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.025000	0.497512	
mm_108853.1	chr12	98445891	98446091	+	1	NA	NA	NA	-77853	NR_136759	105245437	Mm.446375	NR_136759		Gm40893	-	predicted gene, 40893	ncRNA	0.000000	0.348259	
mm_153332.1	chr19	38125137	38125337	-	1	NA	NA	NA	84	NM_001159487	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.015000	0.527363	
mm_83780.1	chr9	52143826	52144026	-	1	NA	NA	NA	24185	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.005000	0.393035	
mm_14805.1	chr2	145886924	145887124	+	1	NA	NA	NA	-16217	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.025000	0.402985	
mm_94625.1	chr11	16785982	16786182	+	1	NA	NA	NA	33879	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.000000	0.313433	
mm_143565.1	chr17	74294691	74294891	-	1	NA	NA	NA	72	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.110000	0.741294	
mm_123899.1	chr14	73117116	73117316	-	1	NA	NA	NA	-25294	NM_001170694	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.030000	0.517413	
mm_166343.1	chr5	115500572	115500772	+	1	NA	NA	NA	-6004	NM_011223	19303	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0.035000	0.482587	
mm_154168.1	chr19	58681685	58681885	-	1	NA	NA	NA	11420	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.005000	0.407960	-1(GCTTTAATACTA,+,0.00)
mm_54010.1	chr6	8171259	8171459	-	1	NA	NA	NA	21258	NM_001037865	213945	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	0.005000	0.398010	
mm_160712.1	chr10	60331629	60331829	-	1	NA	NA	NA	-15122	NM_001159572	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.030000	0.572139	
mm_55042.1	chr6	48987970	48988170	-	1	NA	NA	NA	1209	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.010000	0.547264	
mm_155530.1	chrX	74297049	74297249	+	1	NA	NA	NA	52	NM_018794	54411	Mm.21961	NM_018794	ENSMUSG00000019087	Atp6ap1	16A|AC45|AI316502|AW108110|Atp6ip1|Atp6s1|C7-1|CF2|VATPS1|XAP-3|mFLJ00383	ATPase, H+ transporting, lysosomal accessory protein 1	protein-coding	0.050000	0.611940	
mm_29793.1	chr3	127690666	127690866	-	1	NA	NA	NA	57621	NM_009718	11924	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	0.000000	0.457711	
mm_47352.1	chr5	122707331	122707531	-	1	NA	NA	NA	-113	NM_001310720	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.040000	0.572139	-28(CGATCTAAAAAG,-,0.00)
mm_106541.1	chr11	120578898	120579098	-	1	NA	NA	NA	2622	NM_133796	192662	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.005000	0.621891	
mm_108457.1	chr12	82707459	82707659	+	1	NA	NA	NA	90060	NM_001282061	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0.000000	0.407960	
mm_124757.1	chr15	6644708	6644908	+	1	NA	NA	NA	-63573	NM_030168	78757	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.025000	0.412935	
mm_152205.1	chr19	7710996	7711196	-	1	NA	NA	NA	214	NM_144785	207151	Mm.21365	NM_144785	ENSMUSG00000024757	Slc22a19	D630043A20Rik|OAT-5|Oat5|Slc22a9	solute carrier family 22 (organic anion transporter), member 19	protein-coding	0.010000	0.477612	
mm_162064.1	chrX	9572309	9572509	-	1	NA	NA	NA	-18	NM_001085517	333452	Mm.473671	NM_001085517	ENSMUSG00000061065	H2al1o	EG333452|Gm5132	H2A histone family member L1O	protein-coding	0.010000	0.452736	
mm_33517.1	chr4	130928615	130928815	+	1	NA	NA	NA	15381	NM_010686	16792	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3	lysosomal-associated protein transmembrane 5	protein-coding	0.030000	0.587065	
mm_116959.1	chr13	56141041	56141241	-	1	NA	NA	NA	-5591	NM_001159513	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.000000	0.497512	-37(GCTTTAAGACCC,+,0.00)
mm_53662.1	chr6	141524314	141524514	+	1	NA	NA	NA	28	NM_021471	58807	Mm.284495	NM_021471	ENSMUSG00000030235	Slco1c1	OATP-14|OATP-F|Oatp2|Oatpf|Slc21a14	solute carrier organic anion transporter family, member 1c1	protein-coding	0.005000	0.447761	-63(TCCTCTATAAAC,-,0.00)
mm_50805.1	chr6	54292804	54293004	+	1	NA	NA	NA	20082	NM_023543	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.020000	0.537313	
mm_171527.1	chr4	146610947	146611147	+	1	NA	NA	NA	-64174	NR_045468	67524	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	0.025000	0.502488	
mm_24136.1	chr3	88228235	88228435	+	1	NA	NA	NA	12737	NR_029817	387133		NR_029817	ENSMUSG00000106493	Mir9-1	Mirn9|Mirn9-1|mir-9-1|mmu-mir-9-1	microRNA 9-1	ncRNA	0.010000	0.537313	
mm_9250.1	chr1	171390092	171390292	-	1	NA	NA	NA	1232	NM_001005508	226652	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	0.015000	0.517413	
mm_159111.1	chr2	52109911	52110111	+	1	NA	NA	NA	37174	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.005000	0.373134	
mm_165854.1	chr4	13784670	13784870	+	1	NA	NA	NA	-12	NM_009822	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.005000	0.442786	
mm_144545.1	chr18	28381206	28381406	+	1	NA	NA	NA	-178858	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.005000	0.393035	
mm_90208.1	chr10	120625561	120625761	+	1	NA	NA	NA	-140071	NR_038000	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.015000	0.492537	-78(CCTTTTAGAAGG,+,0.00)
mm_143578.1	chr17	74316271	74316471	-	1	NA	NA	NA	23	NM_001146222	66310	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0.140000	0.696517	
mm_66204.1	chr7	34234463	34234663	-	1	NA	NA	NA	-4227	NM_008155	14751	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	0.025000	0.442786	
mm_53094.1	chr6	125009143	125009343	+	1	NA	NA	NA	5	NM_001252083	269800	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	0.115000	0.746269	
mm_102269.1	chr11	55394632	55394832	-	1	NA	NA	NA	25348	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.010000	0.442786	
mm_44314.1	chr5	9300014	9300214	-	1	NA	NA	NA	33921	NM_172706	231014	Mm.130063	NM_172706	ENSMUSG00000056004	9330182L06Rik	Eig121l	RIKEN cDNA 9330182L06 gene	protein-coding	0.020000	0.432836	
mm_99787.1	chr11	107417422	107417622	+	1	NA	NA	NA	53198	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.015000	0.482587	72(TCCCCTTAAAGG,-,0.00),73(CCCCTTAAAGGC,+,0.00),73(CCCCTTAAAGGC,-,0.00),74(CCCTTAAAGGCA,+,0.00),75(CCTTAAAGGCAC,+,0.00)
mm_153902.1	chr19	47090581	47090781	-	1	NA	NA	NA	-56	NM_023211	66477	Mm.29722	NM_023211	ENSMUSG00000071528	Usmg5	2010301L15Rik	upregulated during skeletal muscle growth 5	protein-coding	0.135000	0.656716	
mm_61483.1	chr7	75684854	75685054	+	1	NA	NA	NA	-163384	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.000000	0.338308	
mm_118379.1	chr13	117025315	117025515	-	1	NA	NA	NA	101	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.055000	0.592040	
mm_133217.1	chr16	75906958	75907158	+	1	NA	NA	NA	2208	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.005000	0.422886	
mm_82724.1	chr9	25151122	25151322	-	1	NA	NA	NA	559	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.130000	0.776119	
mm_44839.1	chr5	34169429	34169629	-	1	NA	NA	NA	-3	NM_001289803	272158	Mm.319286	NM_181857	ENSMUSG00000045102	Poln	POL4P	DNA polymerase N	protein-coding	0.125000	0.666667	
mm_53668.1	chr6	141632506	141632706	+	1	NA	NA	NA	3088	NM_020495	28253	Mm.272223	NM_020495	ENSMUSG00000030236	Slco1b2	7330442B20Rik|OATP-C|OATP2|Oatp1b2|Oatp4|Slc21a10|Slc21a6|lst-1|mlst-1	solute carrier organic anion transporter family, member 1b2	protein-coding	0.005000	0.378109	52(CTCCATTAAAAC,-,0.00)
mm_19487.1	chr2	93203226	93203426	-	1	NA	NA	NA	15742	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.005000	0.462687	
mm_69451.1	chr7	133089013	133089213	-	1	NA	NA	NA	-7253	NM_001347623	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.010000	0.552239	-36(CTCCTTAAAAGG,-,0.00),-35(TCCTTAAAAGGG,+,0.00),-34(CCTTAAAAGGGA,+,0.00)
mm_157012.1	chrX	7671269	7671469	-	1	NA	NA	NA	21	NM_019755	18824	Mm.18565	NM_019755	ENSMUSG00000031146	Plp2	mIMA4	proteolipid protein 2	protein-coding	0.095000	0.711443	
mm_59225.1	chr7	24636478	24636678	+	1	NA	NA	NA	8	NM_133743	72434	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	0.035000	0.631841	
mm_12792.1	chr2	79635290	79635490	+	1	NA	NA	NA	-35	NM_080558	70599	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0.110000	0.796020	
mm_3237.1	chr1	135850681	135850881	+	1	NA	NA	NA	9920	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.015000	0.562189	
mm_170982.1	chr2	72019340	72019540	+	1	NA	NA	NA	-35177	NM_001204166	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.005000	0.517413	
mm_161607.1	chr16	43979178	43979378	-	1	NA	NA	NA	-228	NM_001007460	332175	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	0.045000	0.601990	
mm_55719.1	chr6	73221617	73221817	-	1	NA	NA	NA	-86	NM_001164669	330355	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0.050000	0.547264	
mm_121977.1	chr14	25848243	25848443	-	1	NA	NA	NA	6188	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.015000	0.562189	
mm_87683.1	chr10	59256774	59256974	+	1	NA	NA	NA	34952	NM_172939	268301	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.000000	0.398010	
mm_125042.1	chr15	25778030	25778230	+	1	NA	NA	NA	-65168	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.035000	0.532338	
mm_67161.1	chr7	73541726	73541926	-	1	NA	NA	NA	-80	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.000000	0.472637	
mm_20521.1	chr2	130839590	130839790	-	1	NA	NA	NA	-3	NM_001311147	228602	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	0.065000	0.606965	
mm_145282.1	chr18	53193043	53193243	+	1	NA	NA	NA	16778	NM_026386	67804	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.000000	0.343284	
mm_170008.1	chr17	16889181	16889381	+	1	NA	NA	NA	-174822	NM_001005358	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	0.035000	0.467662	
mm_145787.1	chr18	65143611	65143811	+	1	NA	NA	NA	-105150	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.030000	0.557214	
mm_34416.1	chr4	145273987	145274187	+	1	NA	NA	NA	-27217	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.015000	0.502488	-33(TTCTCTTTAAGG,-,0.00)
mm_119260.1	chr14	33953926	33954126	+	1	NA	NA	NA	4	NM_015745	19661	Mm.436622	NM_015745	ENSMUSG00000041534	Rbp3	Irbp|Rbp-3	retinol binding protein 3, interstitial	protein-coding	0.005000	0.532338	
mm_10192.1	chr2	4918952	4919152	+	1	NA	NA	NA	56	NM_010726	16922	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.075000	0.646766	
mm_6559.1	chr1	75141489	75141689	-	1	NA	NA	NA	779	NM_026977	69171	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0.110000	0.701493	
mm_103327.1	chr11	74522514	74522714	-	1	NA	NA	NA	67544	NM_001015046	380711	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.155000	0.825871	
mm_110539.1	chr12	55302585	55302785	-	1	NA	NA	NA	48	NM_025373	66132	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	0.080000	0.577114	
mm_113798.1	chr13	46418929	46419129	+	1	NA	NA	NA	729	NM_001081425	666794	Mm.38269	NM_001081425	ENSMUSG00000038132	Rbm24	6330546B05Rik|AI606861	RNA binding motif protein 24	protein-coding	0.135000	0.726368	
mm_115045.1	chr13	100104111	100104311	+	1	NA	NA	NA	-141	NM_001081061	544971	Mm.288546	NM_001081061	ENSMUSG00000049658	Bdp1	AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding	0.040000	0.412935	
mm_66985.1	chr7	63939598	63939798	-	1	NA	NA	NA	-783	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.060000	0.681592	
mm_103141.1	chr11	70238864	70239064	-	1	NA	NA	NA	888	NM_173742	52898	Mm.29852	NM_173742	ENSMUSG00000040904	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	0.025000	0.432836	
mm_26804.1	chr3	10025438	10025638	-	1	NA	NA	NA	12953	NM_001272098	16592	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0.015000	0.412935	
mm_34032.1	chr4	138097216	138097416	+	1	NA	NA	NA	41202	NR_126429	73563	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	0.050000	0.572139	
mm_29080.1	chr3	104171372	104171572	-	1	NA	NA	NA	48934	NM_133853	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	0.005000	0.407960	
mm_129199.1	chr15	76511738	76511938	-	1	NA	NA	NA	-20	NM_010046	13350	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	0.160000	0.766169	
mm_58931.1	chr7	17975229	17975429	+	1	NA	NA	NA	3162	NM_023289	66996	Mm.36666	NM_023289	ENSMUSG00000030368	Ceacam11	1600015D01Rik	carcinoembryonic antigen-related cell adhesion molecule 11	protein-coding	0.000000	0.402985	-70(CACTTTTAATGG,-,0.00)
mm_162409.1	chr1	87126248	87126448	+	1	NA	NA	NA	1340	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.010000	0.512438	
mm_79468.1	chr9	56477158	56477358	+	1	NA	NA	NA	58412	NM_025812	66867	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0.030000	0.432836	
mm_19043.1	chr2	77123701	77123901	-	1	NA	NA	NA	46834	NM_001025576	545428	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI|ENSMUSG00000075261	coiled-coil domain containing 141	protein-coding	0.005000	0.343284	
mm_151320.1	chr19	55892595	55892795	+	1	NA	NA	NA	-2626	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.020000	0.457711	
mm_3704.1	chr1	153891636	153891836	+	1	NA	NA	NA	90	NM_178244	240819	Mm.453236	NM_178244	ENSMUSG00000047053	Teddm1a	Epdd1|Teddm1|e9-1	transmembrane epididymal protein 1A	protein-coding	0.010000	0.467662	
mm_55283.1	chr6	54523623	54523823	-	1	NA	NA	NA	42659	NM_027268	69938	Mm.41557	NM_027268	ENSMUSG00000019124	Scrn1	2810019K23Rik|6330535A03Rik|AI852905|SES1|mKIAA0193	secernin 1	protein-coding	0.005000	0.303483	
mm_141841.1	chr17	34729792	34729992	-	1	NA	NA	NA	14005	NM_009780	12268	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	0.020000	0.626866	
mm_14367.1	chr2	129618417	129618617	+	1	NA	NA	NA	25348	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.030000	0.532338	
mm_154579.1	chrX	7572447	7572647	+	1	NA	NA	NA	-1053	NR_029473	78185	Mm.160055	NR_029473	ENSMUSG00000039545	Ppp1r3fos	4930524L23Rik	protein phosphatase 1, regulatory subunit 3F, opposite strand	ncRNA	0.020000	0.467662	
mm_27445.1	chr3	51903263	51903463	-	1	NA	NA	NA	201643	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.005000	0.393035	
mm_20766.1	chr2	142778369	142778569	-	1	NA	NA	NA	122995	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.000000	0.258706	
mm_106802.1	chr12	4956571	4956771	+	1	NA	NA	NA	39318	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.010000	0.368159	
mm_40738.1	chr5	66260046	66260246	+	1	NA	NA	NA	248	NM_001302834	70918	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	0.115000	0.731343	
mm_35496.1	chr4	41047519	41047719	-	1	NA	NA	NA	517	NM_007473	11832	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	0.010000	0.532338	
mm_26509.1	chr3	145827615	145827815	+	1	NA	NA	NA	69023	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.025000	0.472637	
mm_140241.1	chr17	84142795	84142995	+	1	NA	NA	NA	45052	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.005000	0.557214	
mm_80393.1	chr9	75775578	75775778	+	1	NA	NA	NA	313	NM_007555	12160	Mm.428950	NM_007555	ENSMUSG00000032179	Bmp5	AU023399|se	bone morphogenetic protein 5	protein-coding	0.010000	0.412935	
mm_101690.1	chr11	40733308	40733508	-	1	NA	NA	NA	29	NM_013552	15366	Mm.116997	NM_013552	ENSMUSG00000020330	Hmmr	AA386826|CD168|Rhamm	hyaluronan mediated motility receptor (RHAMM)	protein-coding	0.035000	0.507463	
mm_53212.1	chr6	126718810	126719010	+	1	NA	NA	NA	21764	NM_013568	16494	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	0.010000	0.592040	
mm_152114.1	chr19	6979047	6979247	-	1	NA	NA	NA	1293	NM_008020	14227	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	13kDa|FKBP-2|mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0.025000	0.572139	
mm_39208.1	chr4	156050647	156050847	-	1	NA	NA	NA	70	NM_029264	330010	Mm.440232	NM_029264	ENSMUSG00000029074	Ttll10	4833412E22Rik|4930595O22Rik|AU022799|BC042775|Ttll5	tubulin tyrosine ligase-like family, member 10	protein-coding	0.005000	0.502488	
mm_92987.1	chr10	86701710	86701910	-	1	NA	NA	NA	3634	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.015000	0.437811	
mm_90443.1	chr10	127658228	127658428	+	1	NA	NA	NA	8375	NM_001122895	17937	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0.020000	0.547264	
mm_16871.1	chr2	12301818	12302018	-	1	NA	NA	NA	26	NR_138462	241226	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0.100000	0.726368	
mm_70493.1	chr8	12572970	12573170	+	1	NA	NA	NA	21	NM_024279	78634	Mm.116871	NM_024279	ENSMUSG00000010435	Spaca7	1700094C09Rik	sperm acrosome associated 7	protein-coding	0.020000	0.582090	
mm_116517.1	chr13	45744295	45744495	-	1	NA	NA	NA	220596	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.000000	0.348259	
mm_106584.1	chr11	120729552	120729752	-	1	NA	NA	NA	-2368	NM_001347608	67880	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	0.040000	0.597015	
mm_171635.1	chr4	21579192	21579392	+	1	NA	NA	NA	106671	NM_001080771	230025	Mm.208541	NM_001080771	ENSMUSG00000040478	Prdm13	-	PR domain containing 13	protein-coding	0.045000	0.601990	
mm_89536.1	chr10	94550726	94550926	+	1	NA	NA	NA	-24431	NM_001168684	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.025000	0.522388	
mm_98440.1	chr11	94939605	94939805	+	1	NA	NA	NA	3481	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.015000	0.517413	
mm_131362.1	chr16	13780512	13780712	+	1	NA	NA	NA	-87	NM_001039521	106298	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	0.075000	0.611940	
mm_10842.1	chr2	24975130	24975330	+	1	NA	NA	NA	-132	NM_001031808	107733	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	0.110000	0.681592	
mm_80907.1	chr9	100643458	100643658	+	1	NA	NA	NA	-65	NM_009282	20842	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	0.110000	0.726368	
mm_117420.1	chr13	74343294	74343494	-	1	NA	NA	NA	6846	NM_023281	66945	Mm.158231	NM_023281	ENSMUSG00000021577	Sdha	1500032O14Rik|2310034D06Rik|4921513A11|C81073|FP|SDH2|SDHF	succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	protein-coding	0.015000	0.482587	
mm_21546.1	chr2	164054731	164054931	-	1	NA	NA	NA	16271	NM_025996	67145	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	0.015000	0.552239	
mm_44090.1	chr5	149244825	149245025	+	1	NA	NA	NA	-20079	NM_001308462	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.030000	0.467662	
mm_81816.1	chr9	118040512	118040712	+	1	NA	NA	NA	90	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.140000	0.726368	
mm_83454.1	chr9	45203995	45204195	-	1	NA	NA	NA	-20	NM_145403	214523	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	0.010000	0.497512	
mm_17740.1	chr2	32712155	32712355	-	1	NA	NA	NA	529	NM_130860	107951	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0.090000	0.696517	
mm_107168.1	chr12	24708183	24708383	+	1	NA	NA	NA	29	NM_009104	20135	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0.140000	0.721393	-34(GGCTCTTTAAAG,-,0.00),-33(GCTCTTTAAAGG,-,0.00),-32(CTCTTTAAAGGG,+,0.00),-32(CTCTTTAAAGGG,-,0.00),-31(TCTTTAAAGGGC,+,0.00)
mm_64253.1	chr7	141744529	141744729	+	1	NA	NA	NA	-44382	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.017094	0.508475	
mm_42863.1	chr5	122226761	122226961	+	1	NA	NA	NA	16574	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.000000	0.388060	
mm_16026.1	chr2	167539685	167539885	+	1	NA	NA	NA	1590	NM_011427	20613	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	0.005000	0.417910	
mm_34335.1	chr4	143349933	143350133	+	1	NA	NA	NA	283	NM_001162983	242735	Mm.94020	NM_001162983	ENSMUSG00000028584	Lrrc38	A230053A07Rik	leucine rich repeat containing 38	protein-coding	0.110000	0.746269	
mm_39852.1	chr5	30913507	30913707	+	1	NA	NA	NA	-179	NM_133918	100952	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	0.005000	0.626866	
mm_107614.1	chr12	49385555	49385755	+	1	NA	NA	NA	2648	NM_008241	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.105000	0.681592	
mm_22795.1	chr3	22214421	22214621	+	1	NA	NA	NA	-36849	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0.020000	0.412935	-59(CTTTTAATACAC,+,0.00),5(GTGTTTAAATGC,-,0.00),35(GTCTTTATAAAG,-,0.00),37(CTTTATAAAGCA,+,0.00)
mm_94311.1	chr11	4220622	4220822	+	1	NA	NA	NA	2471	NM_028022	71962	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik	GATS protein-like 3	protein-coding	0.035000	0.616915	
mm_139562.1	chr17	56981225	56981425	+	1	NA	NA	NA	801	NM_175731	171168	Mm.218784	NM_175731	ENSMUSG00000045019	Acer1	2310024P18Rik|AI662009|Alkcdase1|Asah3|Cer1	alkaline ceramidase 1	protein-coding	0.015000	0.522388	
mm_17965.1	chr2	37443037	37443237	-	1	NA	NA	NA	-16	NM_199025	320633	Mm.383299	NM_199025	ENSMUSG00000050714	Zbtb26	A630026F21Rik	zinc finger and BTB domain containing 26	protein-coding	0.055000	0.646766	
mm_141515.1	chr17	31681182	31681382	-	1	NA	NA	NA	3351	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.015000	0.597015	
mm_170389.1	chr18	60774564	60774764	+	1	NA	NA	NA	68	NM_020600	20044	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.085000	0.641791	
mm_101274.1	chr11	21370584	21370784	-	1	NA	NA	NA	-55	NM_139297	216558	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0.120000	0.726368	-32(GGCTATTTATGG,-,0.00),-30(CTATTTATGGGC,+,0.00)
mm_25142.1	chr3	102724372	102724572	+	1	NA	NA	NA	-10298	NM_027533	70747	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	0.010000	0.462687	
mm_54776.1	chr6	41539777	41539977	-	1	NA	NA	NA	18101	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.378109	
mm_105262.1	chr11	102356990	102357190	-	1	NA	NA	NA	8191	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.030000	0.587065	
mm_146534.1	chr18	5404334	5404534	-	1	NA	NA	NA	-69995	NM_178722	240186	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.005000	0.522388	
mm_105786.1	chr11	109801679	109801879	-	1	NA	NA	NA	26267	NM_027038	69324	Mm.31700	NM_027038	ENSMUSG00000020617	1700012B07Rik	1700069D21Rik	RIKEN cDNA 1700012B07 gene	protein-coding	0.005000	0.358209	
mm_109605.1	chr12	112721016	112721216	+	1	NA	NA	NA	-1058	NM_001024602	217882	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0.025000	0.542289	
mm_168833.1	chr12	23010082	23010282	-	1	NA	NA	NA	61	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA	0.110000	0.746269	
mm_83040.1	chr9	37348280	37348480	-	1	NA	NA	NA	12	NM_001081429	245902	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	0.085000	0.646766	
mm_78193.1	chr9	21337774	21337974	+	1	NA	NA	NA	46	NM_152808	68682	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0.085000	0.676617	
mm_133654.1	chr16	91807128	91807328	+	1	NA	NA	NA	77857	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.005000	0.398010	
mm_96305.1	chr11	63158351	63158551	+	1	NA	NA	NA	25648	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.060000	0.567164	
mm_128674.1	chr15	60187307	60187507	-	1	NA	NA	NA	-170789	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.005000	0.407960	-34(TTCTTTAAAAGA,-,0.00),-33(TCTTTAAAAGAC,+,0.00)
mm_6550.1	chr1	75133476	75133676	-	1	NA	NA	NA	314	NM_194333	22626	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.010000	0.527363	
mm_72960.1	chr8	92827313	92827513	+	1	NA	NA	NA	116	NM_008610	17390	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	0.045000	0.606965	
mm_111010.1	chr12	78980577	78980777	-	1	NA	NA	NA	2801	NM_001170401	268567	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.015000	0.532338	
mm_109261.1	chr12	109462470	109462670	+	1	NA	NA	NA	9115	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.030000	0.467662	
mm_83035.1	chr9	37255576	37255776	-	1	NA	NA	NA	62	NM_020258	56857	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.015000	0.487562	
mm_93164.1	chr10	93265755	93265955	-	1	NA	NA	NA	45304	NM_001322268	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.015000	0.537313	
mm_28853.1	chr3	96905153	96905353	-	1	NA	NA	NA	45	NM_026229	67549	Mm.46722	NM_026229	ENSMUSG00000028096	Gpr89	4933412D19Rik|Gpr89a|SH120	G protein-coupled receptor 89	protein-coding	0.050000	0.611940	
mm_142678.1	chr17	47732368	47732568	-	1	NA	NA	NA	-4569	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.045000	0.587065	
mm_128733.1	chr15	64182326	64182526	-	1	NA	NA	NA	-121978	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.010000	0.388060	
mm_16329.1	chr2	174327628	174327828	+	1	NA	NA	NA	-40	NM_001310083	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.100000	0.636816	-67(CGCTTTATAGGG,-,0.00),-65(CTTTATAGGGGC,+,0.00)
mm_149828.1	chr19	24500646	24500846	+	1	NA	NA	NA	-23272	NM_026520	68034	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding	0.005000	0.328358	
mm_103939.1	chr11	83753543	83753743	-	1	NA	NA	NA	6	NM_145432	217026	Mm.117874	NM_145432	ENSMUSG00000000976	Heatr6	2700008B19Rik|BB135312|BB249351	HEAT repeat containing 6	protein-coding	0.040000	0.552239	
mm_2500.1	chr1	106171789	106171989	+	1	NA	NA	NA	20	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.165000	0.716418	
mm_6393.1	chr1	72858646	72858846	-	1	NA	NA	NA	16119	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.020000	0.457711	
mm_30938.1	chr4	33031348	33031548	+	1	NA	NA	NA	23	NM_019586	56228	Mm.259095	NM_019586	ENSMUSG00000028277	Ube2j1	0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p	ubiquitin-conjugating enzyme E2J 1	protein-coding	0.185000	0.815920	
mm_85691.1	chr9	108079164	108079364	-	1	NA	NA	NA	37	NM_001311152	84585	Mm.379272	NM_032543	ENSMUSG00000041528	Rnf123	BC003945|Kpc1	ring finger protein 123	protein-coding	0.115000	0.706468	
mm_16370.1	chr2	177759174	177759374	+	1	NA	NA	NA	-14	NM_001243903	626802	Mm.386029	NM_001243903	ENSMUSG00000078864	Gm14322	OTTMUSG00000016321	predicted gene 14322	protein-coding	0.010000	0.497512	
mm_113749.1	chr13	44731171	44731371	+	1	NA	NA	NA	0	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.065000	0.597015	-34(TTGTATAAAAGC,-,0.00),-19(GTCCATTTAAAG,-,0.00),-17(CCATTTAAAGTT,+,0.00)
mm_139178.1	chr17	47593390	47593590	+	1	NA	NA	NA	23	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.130000	0.726368	
mm_108577.1	chr12	84996392	84996592	+	1	NA	NA	NA	171	NM_178363	56531	Mm.153183	NM_178363	ENSMUSG00000021244	Ylpm1	A930013E17Rik|ZAP|Zap3	YLP motif containing 1	protein-coding	0.170000	0.731343	
mm_130585.1	chr15	99601486	99601686	-	1	NA	NA	NA	186	NM_175087	11831	Mm.202309	NM_175087	ENSMUSG00000043144	Aqp6	AI790337	aquaporin 6	protein-coding	0.040000	0.616915	
mm_105722.1	chr11	109011677	109011877	-	1	NA	NA	NA	91428	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.065000	0.606965	
mm_138703.1	chr17	36020890	36021090	+	1	NA	NA	NA	-430	NM_008207	15042	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0.010000	0.442786	
mm_118380.1	chr13	117025423	117025623	-	1	NA	NA	NA	-7	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.055000	0.621891	
mm_52309.1	chr6	108828500	108828700	+	1	NA	NA	NA	-41	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.155000	0.786070	35(TTCCTTAAAGGG,-,0.00),37(CCTTAAAGGGGA,+,0.00)
mm_59169.1	chr7	24399894	24400094	+	1	NA	NA	NA	366	NM_028047	71997	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.090000	0.631841	-6(GCCGTTAAAAGG,-,0.00)
mm_48685.1	chr5	146687412	146687612	-	1	NA	NA	NA	-102273	NM_001010941	14738	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	0.035000	0.621891	
mm_97921.1	chr11	83574609	83574809	+	1	NA	NA	NA	3927	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.000000	0.447761	
mm_149779.1	chr19	23135020	23135220	+	1	NA	NA	NA	-6106	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.060000	0.597015	
mm_151607.1	chr19	3686468	3686668	-	1	NA	NA	NA	-4	NM_008513	16973	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0.185000	0.830846	
mm_2322.1	chr1	92058842	92059042	+	1	NA	NA	NA	121399	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.010000	0.522388	
mm_166618.1	chr6	72314456	72314656	+	1	NA	NA	NA	9946	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.005000	0.432836	
mm_150006.1	chr19	29289471	29289671	+	1	NA	NA	NA	35747	NM_013754	27356	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding	0.025000	0.487562	65(GACTATATGAGG,-,0.00)
mm_97979.1	chr11	83882614	83882814	+	1	NA	NA	NA	29754	NM_001291269	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.020000	0.507463	
mm_169882.1	chr16	41861080	41861280	-	1	NA	NA	NA	327838	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.020000	0.472637	
mm_20068.1	chr2	120404009	120404209	-	1	NA	NA	NA	7	NM_173734	211499	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0.065000	0.577114	
mm_5103.1	chr1	5070199	5070399	-	1	NA	NA	NA	-14	NM_001177795	58175	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0.005000	0.457711	
mm_5038.1	chr1	193334860	193335060	+	1	NA	NA	NA	32717	NM_001277928	16780	Mm.435441	NM_008484	ENSMUSG00000026639	Lamb3	-	laminin, beta 3	protein-coding	0.010000	0.592040	
mm_65943.1	chr7	30413589	30413789	-	1	NA	NA	NA	-99	NM_011662	22177	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0.020000	0.547264	
mm_90278.1	chr10	122805977	122806177	+	1	NA	NA	NA	126762	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.000000	0.358209	
mm_103475.1	chr11	76494503	76494703	-	1	NA	NA	NA	-108	NM_001346670	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.080000	0.706468	
mm_84208.1	chr9	60687974	60688174	-	1	NA	NA	NA	60	NM_145616	102747	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0.070000	0.577114	
mm_92321.1	chr10	75643879	75644079	-	1	NA	NA	NA	29	NM_001162913	71733	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0.025000	0.641791	
mm_98948.1	chr11	98446973	98447173	+	1	NA	NA	NA	239	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.040000	0.532338	
mm_106898.1	chr12	8012572	8012772	+	1	NA	NA	NA	34995	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.388060	
mm_100977.1	chr11	7200725	7200925	-	1	NA	NA	NA	3038	NM_008341	16006	Mm.21300	NM_008341	ENSMUSG00000020429	Igfbp1	-	insulin-like growth factor binding protein 1	protein-coding	0.010000	0.407960	53(GCTCCTAAAAGG,-,0.00)
mm_103749.1	chr11	80429209	80429409	-	1	NA	NA	NA	694	NM_178616	69077	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	0.065000	0.606965	
mm_113971.1	chr13	51651478	51651678	+	1	NA	NA	NA	-130	NM_001308448	75420	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.080000	0.701493	
mm_146289.1	chr18	78476799	78476999	+	1	NA	NA	NA	120051	NM_207651	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.005000	0.378109	
mm_91941.1	chr10	60831340	60831540	-	1	NA	NA	NA	141	NM_029770	107449	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0.145000	0.731343	
mm_18037.1	chr2	38854821	38855021	-	1	NA	NA	NA	1091	NR_029904	723903		NR_029904	ENSMUSG00000065578	Mir181b-2	Mirn181b-2|mir-181b-2	microRNA 181b-2	ncRNA	0.015000	0.348259	
mm_92208.1	chr10	68191644	68191844	-	1	NA	NA	NA	86982	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.005000	0.388060	
mm_79467.1	chr9	56437497	56437697	+	1	NA	NA	NA	18751	NM_025812	66867	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0.080000	0.706468	
mm_90922.1	chr10	12614951	12615151	-	1	NA	NA	NA	246684	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.040000	0.552239	
mm_76322.1	chr8	84701601	84701801	-	1	NA	NA	NA	244	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.050000	0.651741	
mm_120033.1	chr14	55884885	55885085	+	1	NA	NA	NA	43	NR_138134	219094	Mm.37592	NM_027143	ENSMUSG00000047153	Khnyn	6330555F21|9130227C08Rik|AI605259|Kiaa0323|mKIAA0323	KH and NYN domain containing	protein-coding	0.085000	0.696517	
mm_20298.1	chr2	127124858	127125058	-	1	NA	NA	NA	8996	NM_144818	215387	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|HCAP-H|mKIAA0074	non-SMC condensin I complex, subunit H	protein-coding	0.015000	0.432836	-26(GCTTTTAAGAAC,+,0.00)
mm_31314.1	chr4	46114591	46114791	+	1	NA	NA	NA	23784	NM_173033	272027	Mm.331588	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	0.030000	0.542289	
mm_166790.1	chr6	145307232	145307432	-	1	NA	NA	NA	56780	NR_045598	100039495	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	OTTMUSG00000025463	predicted gene 15706	ncRNA	0.015000	0.497512	
mm_118983.1	chr14	28443297	28443497	+	1	NA	NA	NA	-62076	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.015000	0.527363	
mm_150365.1	chr19	34649331	34649531	+	1	NA	NA	NA	8542	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.000000	0.268657	
mm_112878.1	chr13	20854715	20854915	+	1	NA	NA	NA	60702	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.452736	
mm_79078.1	chr9	46242174	46242374	+	1	NA	NA	NA	1430	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.015000	0.507463	
mm_30070.1	chr3	137965897	137966097	-	1	NA	NA	NA	15552	NM_011932	26377	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.025000	0.542289	
mm_105574.1	chr11	106612899	106613099	-	1	NA	NA	NA	-69	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.130000	0.810945	
mm_68144.1	chr7	102246984	102247184	-	1	NA	NA	NA	3034	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.025000	0.582090	
mm_171292.1	chr3	90287571	90287771	+	1	NA	NA	NA	17522	NR_105979	102465612		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.015000	0.402985	
mm_136984.1	chr17	17063960	17064160	+	1	NA	NA	NA	-43	NM_001005358	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	0.020000	0.492537	
mm_9467.1	chr1	173333365	173333565	-	1	NA	NA	NA	38	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	0.010000	0.522388	
mm_125290.1	chr15	36726824	36727024	+	1	NA	NA	NA	64008	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.025000	0.542289	
mm_128709.1	chr15	63912192	63912392	-	1	NA	NA	NA	5	NM_028992	74548	Mm.273185	NM_028992	ENSMUSG00000055748	Gsdmc4	9030605I04Rik	gasdermin C4	protein-coding	0.005000	0.487562	-37(GCCTATATAAGG,-,0.00)
mm_71078.1	chr8	34608192	34608392	+	1	NA	NA	NA	32024	NR_040706	330734	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	0.000000	0.482587	
mm_16816.1	chr2	11374961	11375161	-	1	NA	NA	NA	23439	NR_040615	77543	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.010000	0.412935	
mm_53994.1	chr6	6881868	6882068	-	1	NA	NA	NA	100	NM_198854	13395	Mm.4873	NM_010056	ENSMUSG00000029755	Dlx5	AI385752	distal-less homeobox 5	protein-coding	0.060000	0.651741	
mm_151551.1	chr19	59458584	59458784	+	1	NA	NA	NA	-6	NM_010132	13797	Mm.245394	NM_010132	ENSMUSG00000043969	Emx2	Pdo	empty spiracles homeobox 2	protein-coding	0.050000	0.517413	-62(CACTTTAAAGAG,-,0.00),-60(CTTTAAAGAGTC,+,0.00)
mm_143391.1	chr17	69417197	69417397	-	1	NA	NA	NA	850	NR_026848	77533	Mm.266592	NR_026848		C030034I22Rik	-	RIKEN cDNA C030034I22 gene	ncRNA	0.085000	0.661692	
mm_149562.1	chr19	12795627	12795827	+	1	NA	NA	NA	396	NR_024093	664779	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0.085000	0.656716	
mm_82571.1	chr9	21079704	21079904	-	1	NA	NA	NA	-4216	NR_106050	102465656		NR_106050	ENSMUSG00000098907	Mir7082	Gm27933|mmu-mir-7082	microRNA 7082	ncRNA	0.025000	0.621891	-16(CTCTTTAGGGGG,+,0.00)
mm_34173.1	chr4	140395660	140395860	+	1	NA	NA	NA	-148949	NM_198610	230868	Mm.298731	NM_198610	ENSMUSG00000040972	Igsf21	BC055811|Gm141	immunoglobulin superfamily, member 21	protein-coding	0.020000	0.532338	
mm_127745.1	chr15	103453810	103454010	+	1	NA	NA	NA	85	NM_153505	105855	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	0.030000	0.487562	
mm_12049.1	chr2	59161527	59161727	+	1	NA	NA	NA	777	NM_175464	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.080000	0.691542	
mm_166253.1	chr5	86916902	86917102	-	1	NA	NA	NA	9501	NM_152811	71773	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0.000000	0.383085	
mm_60715.1	chr7	45277445	45277645	+	1	NA	NA	NA	-5328	NM_001033176	76713	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0.110000	0.666667	
mm_146319.1	chr18	80608525	80608725	+	1	NA	NA	NA	-64079	NR_028424	100039348	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.045000	0.656716	
mm_107314.1	chr12	31265201	31265401	+	1	NA	NA	NA	7	NM_008482	16777	Mm.172674	NM_008482	ENSMUSG00000002900	Lamb1	C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1	laminin B1	protein-coding	0.070000	0.651741	
mm_117410.1	chr13	74009247	74009447	-	1	NA	NA	NA	-72	NM_182839	72948	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0.085000	0.716418	
mm_159406.1	chr3	98762275	98762475	-	1	NA	NA	NA	35	NM_001161745	15494	Mm.158717	NM_001012306	ENSMUSG00000062410	Hsd3b3	9030618K22Rik|AI790201	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 3	protein-coding	0.010000	0.457711	
mm_145237.1	chr18	50278266	50278466	+	1	NA	NA	NA	-3	NM_001004061	225497	Mm.329435	NM_001004061	ENSMUSG00000035420	Fam170a	Gm93|Znfd	family with sequence similarity 170, member A	protein-coding	0.005000	0.472637	
mm_142115.1	chr17	35838162	35838362	-	1	NA	NA	NA	39	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.110000	0.681592	
mm_161841.1	chr17	88065197	88065397	-	1	NA	NA	NA	-12	NM_001081034	225055	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.140000	0.771144	
mm_113223.1	chr13	27059403	27059603	+	1	NA	NA	NA	1933	NM_011164	19109	Mm.1270	NM_011164	ENSMUSG00000021342	Prl	AV290867|Gha1|Prl1a1	prolactin	protein-coding	0.020000	0.422886	
mm_146525.1	chr18	4353244	4353444	-	1	NA	NA	NA	-203	NR_040328	73915	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0.080000	0.641791	
mm_138535.1	chr17	35247076	35247276	+	1	NA	NA	NA	3101	NR_105941	102465589		NR_105941	ENSMUSG00000098499	Mir6975	Gm27693|mmu-mir-6975	microRNA 6975	ncRNA	0.025000	0.532338	
mm_172502.1	chr7	67417903	67418103	+	1	NA	NA	NA	-45145	NM_001291195	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.035000	0.557214	
mm_78056.1	chr9	14860139	14860339	+	1	NA	NA	NA	29	NM_010287	14608	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0.100000	0.646766	-73(GGCCCTATAGGC,-,0.00)
mm_59767.1	chr7	28833927	28834127	+	1	NA	NA	NA	-143	NM_010707	16857	Mm.210336	NM_010707		Lgals6	galectin-6	lectin, galactose binding, soluble 6	protein-coding	0.000000	0.552239	-34(GGCCCTAAGAGG,-,0.00)
mm_102245.1	chr11	55078033	55078233	-	1	NA	NA	NA	-2	NM_177471	52570	Mm.22361	NM_177471	ENSMUSG00000049588	Ccdc69	2210021E03Rik|D11Ertd461e	coiled-coil domain containing 69	protein-coding	0.115000	0.751244	-6(CGGCATTTAAGG,-,0.00),-4(GCATTTAAGGCG,+,0.00)
mm_63794.1	chr7	132859152	132859352	+	1	NA	NA	NA	27	NM_198017	109359	Mm.274824	NM_198017	ENSMUSG00000030965	Fam175b	AA589499|AI853413|Abro1|C430003P19Rik	family with sequence similarity 175, member B	protein-coding	0.075000	0.626866	
mm_70857.1	chr8	24395693	24395893	+	1	NA	NA	NA	43153	NM_026931	69068	Mm.25775	NM_026931	ENSMUSG00000056313	1810011O10Rik	1110065B09Rik|AW121743|AW321058	RIKEN cDNA 1810011O10 gene	protein-coding	0.005000	0.412935	
mm_33485.1	chr4	130822091	130822291	+	1	NA	NA	NA	29654	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.005000	0.378109	
mm_47464.1	chr5	123670958	123671158	-	1	NA	NA	NA	13303	NM_019765	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.030000	0.572139	
mm_45007.1	chr5	38491829	38492029	-	1	NA	NA	NA	-8544	NM_001012363	117591	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.020000	0.477612	
mm_151723.1	chr19	4839167	4839367	-	1	NA	NA	NA	55	NM_016892	12460	Mm.434411	NM_016892	ENSMUSG00000034108	Ccs	Ccsd	copper chaperone for superoxide dismutase	protein-coding	0.070000	0.616915	
mm_112645.1	chr13	16016984	16017184	+	1	NA	NA	NA	5233	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.532338	
mm_60172.1	chr7	40987483	40987683	+	1	NA	NA	NA	-26	NM_207248	243944	Mm.333806	NM_207248	ENSMUSG00000091692	4930433I11Rik	Gm481	RIKEN cDNA 4930433I11 gene	protein-coding	0.005000	0.452736	
mm_170519.1	chr19	31723435	31723635	+	1	NA	NA	NA	41498	NM_001013833	19091	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0.065000	0.671642	
mm_132441.1	chr16	35939767	35939967	+	1	NA	NA	NA	-840	NM_001013371	209200	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0.015000	0.482587	-36(GCCTATATAAAA,-,0.00),-34(CTATATAAAAGG,-,0.00)
mm_32482.1	chr4	107889755	107889955	+	1	NA	NA	NA	29	NM_001347160	74098	Mm.274853	NM_028754	ENSMUSG00000028608	0610037L13Rik	1110008H16Rik	RIKEN cDNA 0610037L13 gene	protein-coding	0.095000	0.631841	
mm_41110.1	chr5	87777340	87777540	+	1	NA	NA	NA	2990	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.000000	0.303483	
mm_102042.1	chr11	51950004	51950204	-	1	NA	NA	NA	-17527	NM_029976	52626	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.035000	0.492537	
mm_102148.1	chr11	53632481	53632681	-	1	NA	NA	NA	2121	NM_008355	16163	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	0.015000	0.547264	
mm_139767.1	chr17	64634395	64634595	+	1	NA	NA	NA	32846	NM_008549	17158	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.005000	0.427861	24(GGCTTTTAATGA,-,0.00)
mm_90140.1	chr10	118098089	118098289	+	1	NA	NA	NA	-43598	NM_001162904	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.005000	0.502488	
mm_65274.1	chr7	24299297	24299497	-	1	NA	NA	NA	152	NM_009561	22719	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	0.070000	0.592040	
mm_60993.1	chr7	49246715	49246915	+	1	NA	NA	NA	626	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.105000	0.656716	
mm_171147.1	chr3	153911959	153912159	-	1	NA	NA	NA	130	NR_028525	100217425		NR_028525		Snord45c	MBII-401	small nucleolar RNA, C/D box 45C	snoRNA	0.025000	0.447761	
mm_111070.1	chr12	80128363	80128563	-	1	NA	NA	NA	4381	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.000000	0.437811	
mm_61409.1	chr7	73537935	73538135	+	1	NA	NA	NA	3711	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.055000	0.582090	
mm_98130.1	chr11	87433139	87433339	+	1	NA	NA	NA	5648	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.010000	0.432836	-19(GTTTTTAAAGAG,+,0.00)
mm_18629.1	chr2	69206103	69206303	-	1	NA	NA	NA	10	NM_025565	66442	Mm.272969	NM_025565	ENSMUSG00000005233	Spc25	2600017H08Rik|2610205L13Rik|Spbc25	SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	0.075000	0.597015	
mm_2466.1	chr1	105456448	105456648	+	1	NA	NA	NA	-99838	NM_001160368	320311	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	0.005000	0.432836	
mm_107992.1	chr12	73286702	73286902	+	1	NA	NA	NA	-46	NM_001037717	625098	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0.105000	0.651741	
mm_34115.1	chr4	139200401	139200601	+	1	NA	NA	NA	6390	NM_001271405	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.010000	0.527363	
mm_26926.1	chr3	20249727	20249927	-	1	NA	NA	NA	-7646	NM_007753	12873	Mm.1135	NM_007753	ENSMUSG00000001865	Cpa3	MC-CPA	carboxypeptidase A3, mast cell	protein-coding	0.020000	0.442786	
mm_47596.1	chr5	124862289	124862489	-	1	NA	NA	NA	-168	NM_144819	215707	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.075000	0.592040	
mm_28810.1	chr3	96256189	96256389	-	1	NA	NA	NA	7028	NM_033596	97122	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0.010000	0.417910	
mm_167488.1	chr9	5857146	5857346	+	1	NA	NA	NA	-311366	NM_027924	71785	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0.000000	0.328358	
mm_132619.1	chr16	38761604	38761804	+	1	NA	NA	NA	19445	NM_001285793	56375	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0.020000	0.477612	
mm_116571.1	chr13	47099316	47099516	-	1	NA	NA	NA	6805	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.025000	0.442786	
mm_12629.1	chr2	74704788	74704988	+	1	NA	NA	NA	273	NM_001290731	15437	Mm.280673	NM_008276	ENSMUSG00000027102	Hoxd8	4921540P06Rik|AI047735|Hox-4.3|Hox-5.4	homeobox D8	protein-coding	0.170000	0.776119	-93(CCCCCTTTAAGG,-,0.00),-92(CCCCTTTAAGGC,-,0.00),-91(CCCTTTAAGGCT,+,0.00),-90(CCTTTAAGGCTG,+,0.00)
mm_154111.1	chr19	57134550	57134750	-	1	NA	NA	NA	-15626	NM_001103178	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.040000	0.587065	
mm_14084.1	chr2	125068056	125068256	+	1	NA	NA	NA	29	NM_175034	317750	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0.020000	0.582090	
mm_88089.1	chr10	68529998	68530198	+	1	NA	NA	NA	11777	NM_028491	73287	Mm.141830	NM_028491	ENSMUSG00000019945	1700040L02Rik	-	RIKEN cDNA 1700040L02 gene	protein-coding	0.020000	0.527363	
mm_51455.1	chr6	81923576	81923776	+	1	NA	NA	NA	7	NM_177884	330361	Mm.474487	NM_177884	ENSMUSG00000035125	Gcfc2	A130099G21|AW146020|GCF2|Tcf9	GC-rich sequence DNA binding factor 2	protein-coding	0.100000	0.621891	
mm_121986.1	chr14	26439162	26439362	-	1	NA	NA	NA	81715	NR_038005	71106	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.005000	0.452736	
mm_111087.1	chr12	80260401	80260601	-	1	NA	NA	NA	-120	NM_001346669	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.070000	0.696517	
mm_162755.1	chr10	60479595	60479795	+	1	NA	NA	NA	79969	NM_001164374	100302688	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.005000	0.373134	
mm_52505.1	chr6	115360856	115361056	+	1	NA	NA	NA	5	NM_001127330	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.160000	0.835821	
mm_10373.1	chr2	11724969	11725169	+	1	NA	NA	NA	19357	NM_001271500	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.000000	0.472637	
mm_14819.1	chr2	146855720	146855920	+	1	NA	NA	NA	-69	NM_001033298	228730	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	0.085000	0.711443	
mm_66506.1	chr7	45092090	45092290	-	1	NA	NA	NA	23	NM_026555	52377	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0.050000	0.621891	
mm_164705.1	chr17	51813403	51813603	-	1	NA	NA	NA	-1449	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.165000	0.805970	
mm_108147.1	chr12	76255389	76255589	+	1	NA	NA	NA	257	NM_138745	108156	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0.060000	0.597015	
mm_76019.1	chr8	75025958	75026158	-	1	NA	NA	NA	-7628	NM_001136259	21968	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.015000	0.427861	
mm_133697.1	chr16	92824506	92824706	+	1	NA	NA	NA	1468	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.015000	0.422886	
mm_15685.1	chr2	163630870	163631070	+	1	NA	NA	NA	-13880	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.025000	0.447761	
mm_134923.1	chr16	30389230	30389430	-	1	NA	NA	NA	-800	NM_001128096	224088	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0.050000	0.542289	
mm_155288.1	chrX	61183381	61183581	+	1	NA	NA	NA	2077	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.010000	0.388060	
mm_111859.1	chr12	107958942	107959142	-	1	NA	NA	NA	44372	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.015000	0.572139	
mm_135117.1	chr16	35841066	35841266	-	1	NA	NA	NA	30216	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.010000	0.422886	
mm_35818.1	chr4	46991727	46991927	-	1	NA	NA	NA	-113	NM_001081141	242425	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	0.135000	0.791045	
mm_79806.1	chr9	64176894	64177094	+	1	NA	NA	NA	1562	NR_028548	100217453		NR_028548	ENSMUSG00000094411	Snord16a	MBII-98	small nucleolar RNA, C/D box 16A	snoRNA	0.030000	0.472637	
mm_116032.1	chr13	25269985	25270185	-	1	NA	NA	NA	-89	NM_009513	22360	Mm.4766	NM_009513	ENSMUSG00000048978	Nrsn1	Neurensin-1|Neuro-p24|Vmp	neurensin 1	protein-coding	0.105000	0.691542	
mm_96713.1	chr11	69662542	69662742	+	1	NA	NA	NA	7	NR_125917	24070	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	0.100000	0.691542	
mm_28177.1	chr3	88000277	88000477	-	1	NA	NA	NA	-21	NM_001109758	12032	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0.105000	0.721393	
mm_140890.1	chr17	23975437	23975637	-	1	NA	NA	NA	-307	NM_013921	30943	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	0.000000	0.547264	
mm_13637.1	chr2	114047375	114047575	+	1	NA	NA	NA	5400	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.010000	0.522388	
mm_33842.1	chr4	135759657	135759857	+	1	NA	NA	NA	42	NM_001085509	242702	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	0.025000	0.547264	
mm_163374.1	chr12	44075398	44075598	+	1	NA	NA	NA	134570	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.005000	0.427861	
mm_69653.1	chr7	139683725	139683925	-	1	NA	NA	NA	-10	NM_001302546	212124	Mm.425507	NM_177212	ENSMUSG00000049571	Cfap46	9330101J02Rik|E030019B06Rik|Gm170|Ttc40	cilia and flagella associated protein 46	protein-coding	0.060000	0.641791	
mm_42270.1	chr5	114146234	114146434	+	1	NA	NA	NA	15178	NM_011677	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.025000	0.517413	
mm_125134.1	chr15	30457495	30457695	+	1	NA	NA	NA	285002	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.010000	0.452736	
mm_160559.1	chr9	52047031	52047231	+	1	NA	NA	NA	-19	NM_001104616	19684	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	0.000000	0.472637	
mm_58060.1	chr6	136857639	136857839	-	1	NA	NA	NA	-139	NM_026639	109978	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	0.020000	0.572139	
mm_94560.1	chr11	11667680	11667880	+	1	NA	NA	NA	-18145	NM_009578	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.000000	0.477612	
mm_35745.1	chr4	45408823	45409023	-	1	NA	NA	NA	-157	NM_001009949	230125	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0.065000	0.587065	
mm_13408.1	chr2	104041936	104042136	+	1	NA	NA	NA	14237	NM_212433	57443	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	0.000000	0.373134	
mm_40352.1	chr5	46034315	46034515	+	1	NA	NA	NA	-102006	NR_110478	78106	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	0.005000	0.407960	-76(ACCTTTAAAAAA,-,0.00)
mm_36937.1	chr4	108579178	108579378	-	1	NA	NA	NA	58	NM_172697	230596	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	0.080000	0.557214	
mm_140804.1	chr17	22081199	22081399	-	1	NA	NA	NA	84678	NM_177596	210853	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	0.115000	0.701493	
mm_67312.1	chr7	79466104	79466304	-	1	NA	NA	NA	69	NM_017462	18975	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	0.150000	0.756219	
mm_74362.1	chr8	128359167	128359367	+	1	NA	NA	NA	26	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.030000	0.527363	
mm_936.1	chr1	55796301	55796501	+	1	NA	NA	NA	-134840	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0.020000	0.417910	
mm_30208.1	chr3	144760764	144760964	-	1	NA	NA	NA	113	NR_130895	12722	Mm.454553	NM_009899	ENSMUSG00000056025	Clca3a1	Cacc|Clca1	chloride channel accessory 3A1	protein-coding	0.015000	0.477612	
mm_77087.1	chr8	110776347	110776547	-	1	NA	NA	NA	29477	NM_029646	76527	Mm.77697	NM_029646	ENSMUSG00000031750	Il34	2010004A03Rik|AI593503	interleukin 34	protein-coding	0.000000	0.427861	
mm_107526.1	chr12	40472626	40472826	+	1	NA	NA	NA	26673	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.035000	0.452736	
mm_138284.1	chr17	34611714	34611914	+	1	NA	NA	NA	2800	NM_018862	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.030000	0.577114	
mm_6881.1	chr1	84580605	84580805	-	1	NA	NA	NA	-115134	NR_039588	100628595		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0.005000	0.527363	
mm_118231.1	chr13	111489763	111489963	-	1	NA	NA	NA	178	NM_028487	73274	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.080000	0.601990	
mm_117531.1	chr13	83378959	83379159	-	1	NA	NA	NA	-124975	NM_001347572	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.000000	0.303483	
mm_127196.1	chr15	99074887	99075087	+	1	NA	NA	NA	14	NM_030159	78733	Mm.124905	NM_030159	ENSMUSG00000032783	Troap	AW476063|E130301L11Rik|tastin	trophinin associated protein	protein-coding	0.075000	0.606965	
mm_126613.1	chr15	83035394	83035594	+	1	NA	NA	NA	-2097	NM_001271411	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.010000	0.487562	
mm_45822.1	chr5	87692729	87692929	-	1	NA	NA	NA	6596	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.278607	29(GACTCTATATGC,-,0.00)
mm_12598.1	chr2	74674920	74675120	+	1	NA	NA	NA	7	NM_008274	15432	Mm.57124	NM_008274	ENSMUSG00000001823	Hoxd12	Hox-4.7|Hox-5.6	homeobox D12	protein-coding	0.045000	0.562189	
mm_119102.1	chr14	30951311	30951511	+	1	NA	NA	NA	34	NM_011849	23955	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	0.105000	0.676617	
mm_130049.1	chr15	89147072	89147272	-	1	NA	NA	NA	2434	NM_011161	19094	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	0.050000	0.597015	
mm_125773.1	chr15	74597723	74597923	+	1	NA	NA	NA	38495	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.000000	0.507463	
mm_131837.1	chr16	22960827	22961027	+	1	NA	NA	NA	9855	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.005000	0.492537	
mm_117167.1	chr13	62858613	62858813	-	1	NA	NA	NA	-343	NM_007994	14120	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	0.010000	0.472637	
mm_18203.1	chr2	46442597	46442797	-	1	NA	NA	NA	746092	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.010000	0.442786	
mm_171315.1	chr3	95427549	95427749	+	1	NA	NA	NA	300	NR_033637	100043305	Mm.412052	NR_033637		Gm4349	-	SET domain, bifurcated 1 pseudogene	pseudo	0.055000	0.651741	
mm_68580.1	chr7	115859756	115859956	-	1	NA	NA	NA	-13716	NM_001277326	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.015000	0.393035	87(GCTTTTATATTC,+,0.00)
mm_75068.1	chr8	33826074	33826274	-	1	NA	NA	NA	-78404	NM_001206849	72632	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	0.005000	0.323383	
mm_54516.1	chr6	35512092	35512292	-	1	NA	NA	NA	27696	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.010000	0.487562	67(TACTTTAAGAGG,-,0.00),68(ACTTTAAGAGGG,+,0.00)
mm_156614.1	chrX	153499252	153499452	+	1	NA	NA	NA	1120	NM_018798	54609	Mm.430772	NM_018798	ENSMUSG00000050148	Ubqln2	Chap1|Dsk2|HRIHFB2157|Plic-2|Plic2	ubiquilin 2	protein-coding	0.050000	0.577114	
mm_76.1	chr1	6730011	6730211	+	1	NA	NA	NA	60	NR_045188	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.020000	0.477612	
mm_86967.1	chr10	25375117	25375317	+	1	NA	NA	NA	15419	NM_001199265	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.015000	0.552239	
mm_82089.1	chr9	123049302	123049502	+	1	NA	NA	NA	14661	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.005000	0.457711	
mm_61839.1	chr7	88288878	88289078	+	1	NA	NA	NA	10893	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.005000	0.358209	
mm_53581.1	chr6	137425229	137425429	+	1	NA	NA	NA	14608	NM_001164403	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.010000	0.422886	
mm_164544.1	chr17	8506244	8506444	+	1	NA	NA	NA	-20457	NM_001290707	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.025000	0.592040	
mm_99479.1	chr11	102604516	102604716	+	1	NA	NA	NA	185	NM_020510	57265	Mm.36416	NM_020510	ENSMUSG00000050288	Fzd2	AL033370|AW456835|Fz10|Fzd10|Mfz10|Mfz10a	frizzled class receptor 2	protein-coding	0.125000	0.766169	
mm_5274.1	chr1	18237376	18237576	-	1	NA	NA	NA	-33	NM_001039123	654460	Mm.389000	NM_001039123	ENSMUSG00000073735	Defb18	BD-18|EG654460|mBD-18	defensin beta 18	protein-coding	0.000000	0.348259	-35(GGCTATAAAAAC,-,0.00)
mm_91848.1	chr10	58651594	58651794	-	1	NA	NA	NA	24002	NM_010100	13608	Mm.174523	NM_010100	ENSMUSG00000003227	Edar	ED1R|ED3|ED5|EDA-A1R|EDA3|dl	ectodysplasin-A receptor	protein-coding	0.015000	0.502488	
mm_34002.1	chr4	137920706	137920906	+	1	NA	NA	NA	58569	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.030000	0.547264	
mm_2759.1	chr1	130163762	130163962	+	1	NA	NA	NA	259181	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	0.000000	0.417910	
mm_70699.1	chr8	15032322	15032522	+	1	NA	NA	NA	13656	NR_037972	434285	Mm.334425	NM_001007591	ENSMUSG00000049008	BB014433	-	expressed sequence BB014433	ncRNA	0.020000	0.447761	
mm_169250.1	chr13	76180324	76180524	+	1	NA	NA	NA	81690	NM_001081352	218343	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	mKIAA0372	tetratricopeptide repeat domain 37	protein-coding	0.005000	0.447761	
mm_98778.1	chr11	96789145	96789345	+	1	NA	NA	NA	109	NM_007622	12412	Mm.29055	NM_007622	ENSMUSG00000018666	Cbx1	Cbx|Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1	chromobox 1	protein-coding	0.145000	0.701493	
mm_171996.1	chr6	104263085	104263285	-	1	NA	NA	NA	-229859	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding	0.050000	0.631841	
mm_138321.1	chr17	34837169	34837369	+	1	NA	NA	NA	250	NM_001163770	112403	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	0.085000	0.631841	
mm_13906.1	chr2	120484267	120484467	+	1	NA	NA	NA	7458	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.000000	0.472637	
mm_138970.1	chr17	44839219	44839419	+	1	NA	NA	NA	-24522	NR_073392	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.000000	0.268657	27(CTTTATATAGAA,+,0.00)
mm_149058.1	chr19	8839364	8839564	+	1	NA	NA	NA	136	NM_008144	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.005000	0.587065	
mm_24810.1	chr3	95588874	95589074	+	1	NA	NA	NA	40	NM_001177670	229593	Mm.245830	NM_146133	ENSMUSG00000046519	Golph3l	2010204I15Rik|AU015439|AW549227|C77637|Gpp34r	golgi phosphoprotein 3-like	protein-coding	0.020000	0.497512	
mm_124809.1	chr15	8967833	8968033	+	1	NA	NA	NA	-16	NM_198024	223332	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0.015000	0.492537	
mm_125757.1	chr15	73829984	73830184	+	1	NA	NA	NA	9587	NM_001033365	268816	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding	0.010000	0.537313	
mm_133829.1	chr16	95900398	95900598	+	1	NA	NA	NA	-1785	NR_040485	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.035000	0.542289	
mm_115861.1	chr13	21440602	21440802	-	1	NA	NA	NA	8	NM_001162919	319207	Mm.434384	NM_001012311	ENSMUSG00000055313	Pgbd1	4921509E05Rik	piggyBac transposable element derived 1	protein-coding	0.040000	0.517413	
mm_119435.1	chr14	46379357	46379557	+	1	NA	NA	NA	-67	NR_037981	100041724	Mm.383311	NM_001099324	ENSMUSG00000079261	Gm15217	OTTMUSG00000019524	predicted gene 15217	ncRNA	0.020000	0.432836	
mm_45858.1	chr5	87788519	87788719	-	1	NA	NA	NA	14169	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.010000	0.383085	
mm_108808.1	chr12	92809576	92809776	+	1	NA	NA	NA	635147	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0.010000	0.422886	-33(TAGCTTAAAAGC,-,0.00)
mm_149679.1	chr19	20492483	20492683	+	1	NA	NA	NA	-132	NR_015502	320092	Mm.482524	NR_015502		E030003E18Rik	1700127G21Rik	RIKEN cDNA E030003E18 gene	ncRNA	0.000000	0.482587	
mm_111673.1	chr12	103338257	103338457	-	1	NA	NA	NA	17644	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.015000	0.527363	-77(TCTTATATGGTC,+,0.00)
mm_2794.1	chr1	130851362	130851562	+	1	NA	NA	NA	-14315	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.010000	0.462687	
mm_132665.1	chr16	42166653	42166853	+	1	NA	NA	NA	136716	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0.015000	0.427861	
mm_73075.1	chr8	94450108	94450308	+	1	NA	NA	NA	-15105	NR_015514	320377	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0.010000	0.452736	
mm_36537.1	chr4	86656058	86656258	-	1	NA	NA	NA	13901	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.015000	0.477612	
mm_5821.1	chr1	52727239	52727439	-	1	NA	NA	NA	-21	NM_133829	98682	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	0.125000	0.761194	
mm_106323.1	chr11	118303640	118303840	-	1	NA	NA	NA	-13496	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.040000	0.562189	
mm_125014.1	chr15	25626095	25626295	+	1	NA	NA	NA	3645	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.010000	0.457711	
mm_54737.1	chr6	40954281	40954481	-	1	NA	NA	NA	-10391	NM_023707	73626	Mm.425319	NM_023707	ENSMUSG00000094808	1810009J06Rik	-	RIKEN cDNA 1810009J06 gene	protein-coding	0.005000	0.378109	
mm_4613.1	chr1	178555793	178555993	+	1	NA	NA	NA	26768	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.005000	0.412935	
mm_165929.1	chr4	63634327	63634527	+	1	NA	NA	NA	-11998	NM_029324	75524	Mm.38543	NM_029324	ENSMUSG00000058935	1700018C11Rik	bM230C2.3	RIKEN cDNA 1700018C11 gene	protein-coding	0.000000	0.383085	
mm_122265.1	chr14	34310450	34310650	-	1	NA	NA	NA	-47	NM_029389	75698	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	0.165000	0.791045	
mm_78725.1	chr9	41580652	41580852	+	1	NA	NA	NA	-501	NR_015483	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.035000	0.442786	
mm_49691.1	chr6	33503187	33503387	+	1	NA	NA	NA	254137	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.005000	0.313433	
mm_12236.1	chr2	68726801	68727001	+	1	NA	NA	NA	69017	NM_183113	75721	Mm.65456	NM_183113	ENSMUSG00000079324	4932414N04Rik	-	RIKEN cDNA 4932414N04 gene	protein-coding	0.015000	0.447761	-25(AGCTATAAAAAG,-,0.00)
mm_37405.1	chr4	121518853	121519053	-	1	NA	NA	NA	-95854	NM_001144948	666921	Mm.477980	NM_001144948	ENSMUSG00000078576	Gm12886	OTTMUSG00000008908	predicted gene 12886	protein-coding	0.000000	0.492537	
mm_130562.1	chr15	99287100	99287300	-	1	NA	NA	NA	-20	NM_001081254	545136	Mm.324745	NM_001081254	ENSMUSG00000078907	Fam186b	EG545136	family with sequence similarity 186, member B	protein-coding	0.010000	0.522388	
mm_145135.1	chr18	45268759	45268959	+	1	NA	NA	NA	-1	NM_001312905	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.075000	0.621891	
mm_66069.1	chr7	30836511	30836711	-	1	NA	NA	NA	-12836	NM_146187	233079	Mm.97338	NM_146187	ENSMUSG00000051314	Ffar2	GPCR43|Gpr43	free fatty acid receptor 2	protein-coding	0.035000	0.507463	
mm_5817.1	chr1	52726709	52726909	-	1	NA	NA	NA	509	NM_178081	98682	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	0.115000	0.726368	
mm_86809.1	chr10	20339659	20339859	+	1	NA	NA	NA	-8060	NM_027930	71804	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0.020000	0.398010	-70(CTTTTTAAACCT,+,0.00),-60(CTTTTTATAGCA,+,0.00)
mm_76435.1	chr8	84985726	84985926	-	1	NA	NA	NA	-4769	NM_133255	170833	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	0.055000	0.661692	
mm_159897.1	chr6	34920622	34920822	+	1	NA	NA	NA	-238	NM_009292	20899	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0.010000	0.492537	
mm_45971.1	chr5	90469435	90469635	-	1	NA	NA	NA	8665	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.432836	
mm_17707.1	chr2	32385379	32385579	-	1	NA	NA	NA	2260	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.020000	0.542289	
mm_107104.1	chr12	17755230	17755430	+	1	NA	NA	NA	64516	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.010000	0.467662	
mm_135382.1	chr16	44139662	44139862	-	1	NA	NA	NA	-29	NM_001347239	72117	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	0.135000	0.756219	
mm_36962.1	chr4	109174166	109174366	-	1	NA	NA	NA	28006	NM_133885	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.000000	0.512438	
mm_171130.1	chr3	146838776	146838976	-	1	NA	NA	NA	-13491	NM_001302957	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.025000	0.487562	
mm_171064.1	chr3	111198302	111198502	-	1	NA	NA	NA	-683501	NR_045362	625585	Mm.389497	NR_045362	ENSMUSG00000104543	Gm6602	-	predicted gene 6602	ncRNA	0.020000	0.482587	-32(GCCTATATAAGC,-,0.00)
mm_7340.1	chr1	105966959	105967159	-	1	NA	NA	NA	-23347	NM_001122676	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.005000	0.467662	
mm_73147.1	chr8	94992593	94992793	+	1	NA	NA	NA	8294	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.010000	0.601990	
mm_25730.1	chr3	122834399	122834599	+	1	NA	NA	NA	-32519	NR_045168	71647	Mm.449992	NR_045168	ENSMUSG00000106583	4930447N08Rik	-	RIKEN cDNA 4930447N08 gene	ncRNA	0.020000	0.393035	52(GTCTCTTAAAGA,-,0.00)
mm_57744.1	chr6	129093253	129093453	-	1	NA	NA	NA	7550	NM_153506	232409	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0.015000	0.398010	
mm_164478.1	chr16	73086345	73086545	+	1	NA	NA	NA	423296	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.010000	0.353234	
mm_50068.1	chr6	41227413	41227613	+	1	NA	NA	NA	-74759	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.015000	0.447761	
mm_12214.1	chr2	67445902	67446102	+	1	NA	NA	NA	0	NM_001083919	241431	Mm.261043	NM_001024618	ENSMUSG00000027022	Xirp2	2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2	xin actin-binding repeat containing 2	protein-coding	0.005000	0.507463	
mm_156981.1	chrX	7235055	7235255	-	1	NA	NA	NA	2619	NR_030495	723974		NR_030495	ENSMUSG00000070108	Mir500	Mirn500|mir-500|mmu-mir-500	microRNA 500	ncRNA	0.015000	0.462687	
mm_22677.1	chr3	15055986	15056186	+	1	NA	NA	NA	84885	NR_040550	77127	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0.010000	0.388060	
mm_126825.1	chr15	88858493	88858693	+	1	NA	NA	NA	-3601	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.005000	0.587065	
mm_131183.1	chr16	7193632	7193832	+	1	NA	NA	NA	123897	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.020000	0.537313	
mm_131673.1	chr16	20672832	20673032	+	1	NA	NA	NA	205	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.135000	0.796020	
mm_147355.1	chr18	43373099	43373299	-	1	NA	NA	NA	73	NM_001136086	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.015000	0.462687	
mm_105810.1	chr11	110533150	110533350	-	1	NA	NA	NA	134128	NM_011943	26399	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.040000	0.527363	
mm_45044.1	chr5	41706814	41707014	-	1	NA	NA	NA	777	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.020000	0.378109	
mm_28617.1	chr3	94997009	94997209	-	1	NA	NA	NA	-7059	NR_105980	102465613		NR_105980	ENSMUSG00000099033	Mir7013	Gm27488|mmu-mir-7013	microRNA 7013	ncRNA	0.005000	0.487562	
mm_82018.1	chr9	121730586	121730786	+	1	NA	NA	NA	11505	NM_010918	18087	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0.000000	0.378109	
mm_158158.1	chrX	103480690	103480890	-	1	NA	NA	NA	2443	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.015000	0.288557	
mm_40062.1	chr5	33996656	33996856	+	1	NA	NA	NA	772	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.170000	0.810945	
mm_87034.1	chr10	28668394	28668594	+	1	NA	NA	NA	134	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.015000	0.527363	
mm_94131.1	chr10	128695938	128696138	-	1	NA	NA	NA	230	NM_177411	19344	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	0.085000	0.746269	
mm_38514.1	chr4	141398604	141398804	-	1	NA	NA	NA	2	NM_024412	12733	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	0.025000	0.611940	
mm_107927.1	chr12	71111337	71111537	+	1	NA	NA	NA	9	NM_029227	75266	Mm.402075	NM_029227	ENSMUSG00000021078	Tomm20l	4930553D19Rik	translocase of outer mitochondrial membrane 20 homolog (yeast)-like	protein-coding	0.090000	0.661692	
mm_5623.1	chr1	40163346	40163546	-	1	NA	NA	NA	-61634	NM_008362	16177	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.000000	0.462687	-33(CTGCATAAAGGG,-,0.00)
mm_92514.1	chr10	78440692	78440892	-	1	NA	NA	NA	4365	NR_105873	102466762		NR_105873	ENSMUSG00000098279	Mir6908	Gm27827|mmu-mir-6908	microRNA 6908	ncRNA	0.055000	0.601990	
mm_104365.1	chr11	94321863	94322063	-	1	NA	NA	NA	-52	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.110000	0.726368	
mm_172538.1	chr7	95187892	95188092	+	1	NA	NA	NA	-983252	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.015000	0.462687	
mm_51910.1	chr6	91212722	91212922	+	1	NA	NA	NA	58	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.105000	0.666667	
mm_102652.1	chr11	63463827	63464027	-	1	NA	NA	NA	-77858	NR_105772	102466632		NR_105772	ENSMUSG00000098829	Mir6354	Gm27282|mmu-mir-6354	microRNA 6354	ncRNA	0.055000	0.537313	
mm_42911.1	chr5	122648240	122648440	+	1	NA	NA	NA	-2084	NM_001284402	18439	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.030000	0.562189	
mm_115625.1	chr13	12105300	12105500	-	1	NA	NA	NA	1545	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.025000	0.532338	
mm_151303.1	chr19	55741830	55742030	+	1	NA	NA	NA	120	NM_001142923	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.055000	0.482587	
mm_54049.1	chr6	13838337	13838537	-	1	NA	NA	NA	1505	NM_001330666	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.015000	0.398010	
mm_49884.1	chr6	38662990	38663190	+	1	NA	NA	NA	21	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.200000	0.840796	
mm_153275.1	chr19	37175990	37176190	-	1	NA	NA	NA	-27	NM_001290826	208922	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.010000	0.492537	
mm_87289.1	chr10	42501952	42502152	+	1	NA	NA	NA	-2	NM_017472	54198	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.130000	0.721393	
mm_172679.1	chr8	51347365	51347565	+	1	NA	NA	NA	979353	NR_046067	100039954	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.045000	0.621891	
mm_101229.1	chr11	20331206	20331406	-	1	NA	NA	NA	1407	NM_018861	55963	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.010000	0.368159	
mm_163088.1	chr11	69734562	69734762	-	1	NA	NA	NA	23971	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.015000	0.527363	
mm_111454.1	chr12	98385811	98386011	-	1	NA	NA	NA	117276	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.000000	0.447761	
mm_119376.1	chr14	41131686	41131886	+	1	NA	NA	NA	-2	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.020000	0.557214	
mm_117185.1	chr13	63539245	63539445	-	1	NA	NA	NA	26390	NM_008957	19206	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes	patched 1	protein-coding	0.040000	0.592040	-74(GTGCTTTAAGGG,-,0.00),-72(GCTTTAAGGGGT,+,0.00)
mm_69324.1	chr7	128523354	128523554	-	1	NA	NA	NA	-129	NM_013863	29810	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0.065000	0.656716	
mm_42370.1	chr5	114924164	114924364	+	1	NA	NA	NA	1024	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.020000	0.467662	-29(CTCTCTTTAGGG,-,0.00),-27(CTCTTTAGGGGG,+,0.00)
mm_1877.1	chr1	85610766	85610966	+	1	NA	NA	NA	-6975	NM_175397	109032	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|ENSMUSG00000075603|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.020000	0.422886	
mm_71780.1	chr8	66490918	66491118	+	1	NA	NA	NA	-4511	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.010000	0.447761	
mm_36522.1	chr4	84674898	84675098	-	1	NA	NA	NA	88	NM_172870	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.095000	0.711443	
mm_33779.1	chr4	134535395	134535595	+	1	NA	NA	NA	-108	NM_029759	76824	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	0.060000	0.626866	
mm_50400.1	chr6	48720342	48720542	+	1	NA	NA	NA	1821	NM_146167	231932	Mm.30479	NM_146167	ENSMUSG00000043931	Gimap7	IAN7|Ian3	GTPase, IMAP family member 7	protein-coding	0.015000	0.492537	
mm_59060.1	chr7	19415312	19415512	+	1	NA	NA	NA	4318	NM_007710	12715	Mm.2375	NM_007710	ENSMUSG00000030399	Ckm	Ckmm|M-CK|MCK	creatine kinase, muscle	protein-coding	0.055000	0.606965	
mm_85023.1	chr9	88438823	88439023	-	1	NA	NA	NA	28	NM_172926	244962	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0.105000	0.731343	
mm_77974.1	chr9	7868181	7868381	+	1	NA	NA	NA	4889	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.000000	0.402985	
mm_34551.1	chr4	149586461	149586661	+	1	NA	NA	NA	93	NM_023051	65945	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0.185000	0.815920	
mm_70877.1	chr8	25103387	25103587	+	1	NA	NA	NA	-1676	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.025000	0.422886	
mm_5315.1	chr1	22562435	22562635	-	1	NA	NA	NA	-129692	NM_183018	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.005000	0.298507	-62(GTATTTAAAAGC,-,0.00),-53(AGCTATAAATGA,-,0.00)
mm_7257.1	chr1	93799264	93799464	-	1	NA	NA	NA	2570	NM_023136	21915	Mm.250332	NM_023136	ENSMUSG00000026281	Dtymk	AU044245|CDC8|D10Ertd203e|TMPK|TYPK|Tmk|mtmk	deoxythymidylate kinase	protein-coding	0.000000	0.353234	
mm_122499.1	chr14	46809179	46809379	-	1	NA	NA	NA	12963	NM_022023	63985	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	0.010000	0.388060	
mm_148253.1	chr18	80742904	80743104	-	1	NA	NA	NA	-29933	NM_001164109	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.005000	0.432836	
mm_120564.1	chr14	68159765	68159965	+	1	NA	NA	NA	-34861	NM_008691	18040	Mm.242832	NM_008691	ENSMUSG00000022054	Nefm	NF-M|NF160|NF165|Nef3|Nfm	neurofilament, medium polypeptide	protein-coding	0.010000	0.398010	
mm_133896.1	chr16	97536242	97536442	+	1	NA	NA	NA	259	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.000000	0.552239	
mm_63339.1	chr7	126959711	126959911	+	1	NA	NA	NA	9276	NM_001252566	233878	Mm.283926	NM_144926	ENSMUSG00000030683	Sez6l2	AI835913|AW121566|BSRP-A|Psk1	seizure related 6 homolog like 2	protein-coding	0.025000	0.601990	
mm_67260.1	chr7	75774017	75774217	-	1	NA	NA	NA	-74221	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.000000	0.328358	81(TTCTTTAAGAGG,-,0.00),82(TCTTTAAGAGGA,+,0.00)
mm_20620.1	chr2	131855713	131855913	-	1	NA	NA	NA	3934	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	0.015000	0.457711	
mm_93898.1	chr10	125389465	125389665	-	1	NA	NA	NA	-61030	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.090000	0.691542	
mm_7025.1	chr1	87098479	87098679	-	1	NA	NA	NA	3027	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.025000	0.597015	
mm_81042.1	chr9	105395441	105395641	+	1	NA	NA	NA	149	NM_025651	66595	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1 (Drosophila)	protein-coding	0.100000	0.661692	
mm_159161.1	chr2	90679074	90679274	+	1	NA	NA	NA	1959	NM_021512	59015	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.130000	0.676617	
mm_154819.1	chrX	16522773	16522973	+	1	NA	NA	NA	4	NM_025738	66742	Mm.45302	NM_025738	ENSMUSG00000023257	Cypt1	4931420D14Rik|Ckt1r3|Cypt5|Cypt6|TISP55	cysteine-rich perinuclear theca 1	protein-coding	0.015000	0.567164	
mm_92890.1	chr10	82814043	82814243	-	1	NA	NA	NA	2020	NR_038042	70003	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	0.020000	0.482587	
mm_100111.1	chr11	115814178	115814378	+	1	NA	NA	NA	-461	NM_029557	76265	Mm.275438	NM_029557	ENSMUSG00000020781	Tsen54	0610034P02Rik	tRNA splicing endonuclease subunit 54	protein-coding	0.020000	0.542289	
mm_59205.1	chr7	24507257	24507457	+	1	NA	NA	NA	270	NR_110958	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.150000	0.736318	
mm_23913.1	chr3	83043775	83043975	+	1	NA	NA	NA	5988	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.030000	0.427861	
mm_127761.1	chr15	103515149	103515349	+	1	NA	NA	NA	272	NM_001285890	18574	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.000000	0.527363	
mm_154898.1	chrX	20872699	20872899	+	1	NA	NA	NA	2633	NM_001294280	21857	Mm.8245	NM_011593	ENSMUSG00000001131	Timp1	Clgi|EPA|TIMP-1|TPA-S1|Timp	tissue inhibitor of metalloproteinase 1	protein-coding	0.010000	0.457711	
mm_128571.1	chr15	57695258	57695458	-	1	NA	NA	NA	691	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.055000	0.393035	
mm_76544.1	chr8	88118490	88118690	-	1	NA	NA	NA	-169	NM_029074	382030	Mm.216574	NM_029074	ENSMUSG00000036810	Cnep1r1	5033428A16Rik|NEP1-R1|Tmem188	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding	0.040000	0.492537	
mm_95927.1	chr11	58330624	58330824	+	1	NA	NA	NA	17	NM_001308167	79566	Mm.290534	NM_024480	ENSMUSG00000013646	Sh3bp5l	2310074E09Rik|BC003251|mKIAA1720	SH3 binding domain protein 5 like	protein-coding	0.070000	0.502488	
mm_79216.1	chr9	49250409	49250609	+	1	NA	NA	NA	-22	NM_177701	235327	Mm.246604	NM_177701	ENSMUSG00000054156	Gm4894	A430041E03|EG235327	predicted gene 4894	protein-coding	0.015000	0.542289	
mm_49902.1	chr6	38941301	38941501	+	1	NA	NA	NA	22415	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.005000	0.472637	-34(CTCCATAAATAG,-,0.00),-32(CCATAAATAGAC,+,0.00)
mm_88809.1	chr10	80763786	80763986	+	1	NA	NA	NA	8680	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.005000	0.462687	-34(CCCTATTTAAGT,-,0.00)
mm_116882.1	chr13	55100185	55100385	-	1	NA	NA	NA	10	NM_011307	20184	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	0.140000	0.751244	
mm_87434.1	chr10	51451706	51451906	+	1	NA	NA	NA	-28806	NM_008147	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.010000	0.537313	
mm_18429.1	chr2	60780841	60781041	-	1	NA	NA	NA	-58338	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.005000	0.432836	
mm_113239.1	chr13	27312519	27312719	+	1	NA	NA	NA	-8	NM_011166	19111	Mm.7512	NM_011166	ENSMUSG00000069259	Prl6a1	Ghd10|PLP-B|Prlpb	prolactin family 6, subfamily a, member 1	protein-coding	0.020000	0.452736	-34(GTATATAAAAGG,-,0.00)
mm_9770.1	chr1	180999753	180999953	-	1	NA	NA	NA	17716	NM_010145	13849	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.010000	0.547264	
mm_121327.1	chr14	114945921	114946121	+	1	NA	NA	NA	-73	NR_126548	74982		NR_126548		1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	0.015000	0.442786	
mm_100949.1	chr11	6599340	6599540	-	1	NA	NA	NA	6614	NM_001081652	192950	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	0.005000	0.597015	
mm_80711.1	chr9	92250204	92250404	+	1	NA	NA	NA	110	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.065000	0.626866	
mm_109010.1	chr12	103346151	103346351	+	1	NA	NA	NA	9750	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.000000	0.452736	
mm_146389.1	chr18	82692840	82693040	+	1	NA	NA	NA	-206	NM_177832	329002	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.160000	0.800995	
mm_65987.1	chr7	30526072	30526272	-	1	NA	NA	NA	8888	NM_001289670	233071	Mm.190704	NM_178252	ENSMUSG00000036882	Arhgap33	AW324378|NOMA-GAP|Snx26|TCGAP	Rho GTPase activating protein 33	protein-coding	0.030000	0.621891	
mm_100178.1	chr11	116533964	116534164	+	1	NA	NA	NA	-676	NM_011451	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.080000	0.696517	
mm_168078.1	chr10	113503023	113503223	-	1	NA	NA	NA	-83455	NR_035418	100316831		NR_035418	ENSMUSG00000080594	Mir669h	Mirn669h|mir-669h|mmu-mir-669h	microRNA 669h	ncRNA	0.010000	0.492537	-31(GGGTATTTAAGG,-,0.00)
mm_137797.1	chr17	29681075	29681275	+	1	NA	NA	NA	20580	NM_028791	74157	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	0.010000	0.492537	
mm_63908.1	chr7	139214571	139214771	+	1	NA	NA	NA	-1364	NM_001162540	57740	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	0.020000	0.601990	
mm_109182.1	chr12	108472665	108472865	+	1	NA	NA	NA	49949	NM_001043335	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.010000	0.467662	
mm_10554.1	chr2	16751187	16751387	+	1	NA	NA	NA	262439	NR_040632	75069	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	0.010000	0.432836	
mm_99133.1	chr11	100319859	100320059	+	1	NA	NA	NA	10	NM_011508	20918	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.115000	0.701493	-6(GGCTATATAAGT,-,0.00)
mm_155110.1	chrX	48519343	48519543	+	1	NA	NA	NA	158	NM_011228	19337	Mm.2015	NM_011228	ENSMUSG00000031104	Rab33a	Rabs10	RAB33A, member RAS oncogene family	protein-coding	0.095000	0.621891	
mm_82802.1	chr9	29769232	29769432	-	1	NA	NA	NA	193797	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.010000	0.388060	
mm_106816.1	chr12	7980468	7980668	+	1	NA	NA	NA	2891	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.000000	0.452736	-12(CCTTAAAGAGGT,+,0.00)
mm_3675.1	chr1	153667408	153667608	+	1	NA	NA	NA	1835	NM_001347115	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding	0.010000	0.512438	
mm_144570.1	chr18	31789046	31789246	+	1	NA	NA	NA	-13	NM_027002	69241	Mm.279898	NM_027002	ENSMUSG00000024258	Polr2d	2310002G05Rik|2610028L19Rik|HSRBP4|RBP4	polymerase (RNA) II (DNA directed) polypeptide D	protein-coding	0.090000	0.626866	
mm_57973.1	chr6	135349684	135349884	-	1	NA	NA	NA	-13147	NM_010128	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.035000	0.402985	
mm_70152.1	chr7	143460897	143461097	-	1	NA	NA	NA	53	NM_009876	12577	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.100000	0.661692	-34(GCGTATAAAGGG,-,0.00)
mm_58637.1	chr7	6018879	6019079	+	1	NA	NA	NA	-7969	NM_030738	81013	Mm.160378	NM_030738	ENSMUSG00000066850	Vmn1r65	V1rd6|V3R6	vomeronasal 1 receptor 65	protein-coding	0.025000	0.437811	
mm_119388.1	chr14	41137249	41137449	+	1	NA	NA	NA	5561	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.000000	0.457711	
mm_164194.1	chr15	78899725	78899925	+	1	NA	NA	NA	57	NM_009164	20401	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	0.095000	0.741294	
mm_125256.1	chr15	35313194	35313394	+	1	NA	NA	NA	15241	NR_045280	100126269	Mm.247402	NR_045280		BC048602	-	cDNA sequence BC048602	ncRNA	0.005000	0.358209	
mm_16020.1	chr2	167503338	167503538	+	1	NA	NA	NA	-10564	NM_170756	263876	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	0.145000	0.741294	
mm_167137.1	chr7	127273896	127274096	-	1	NA	NA	NA	63	NM_009266	20768	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0.130000	0.686567	
mm_1819.1	chr1	82342893	82343093	+	1	NA	NA	NA	3944	NM_001122685	76867	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	0.010000	0.328358	
mm_104814.1	chr11	98961439	98961639	-	1	NA	NA	NA	1068	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.010000	0.582090	
mm_6786.1	chr1	84140170	84140370	-	1	NA	NA	NA	78691	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.328358	-13(GCCTATTAAGGC,-,0.00)
mm_71607.1	chr8	56297319	56297519	+	1	NA	NA	NA	2867	NM_008278	15446	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.010000	0.363184	
mm_131775.1	chr16	22894732	22894932	+	1	NA	NA	NA	-446	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.020000	0.487562	
mm_161166.1	chr13	34002782	34002982	+	1	NA	NA	NA	8	NM_009068	19766	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	0.110000	0.597015	
mm_106474.1	chr11	120139330	120139530	-	1	NA	NA	NA	11921	NM_001164799	72055	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0.030000	0.557214	
mm_116245.1	chr13	33935664	33935864	-	1	NA	NA	NA	-268	NR_040707	68808	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0.095000	0.691542	
mm_57779.1	chr6	129239658	129239858	-	1	NA	NA	NA	-1276	NR_040266	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.005000	0.442786	
mm_69727.1	chr7	140773082	140773282	-	1	NA	NA	NA	9350	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.045000	0.537313	
mm_9441.1	chr1	172588140	172588340	-	1	NA	NA	NA	2328	NM_029084	74748	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	0.030000	0.567164	
mm_30801.1	chr4	20008398	20008598	+	1	NA	NA	NA	169	NM_015767	50500	Mm.24375	NM_015767	ENSMUSG00000073988	Ttpa	alpha-TTP	tocopherol (alpha) transfer protein	protein-coding	0.095000	0.711443	
mm_133657.1	chr16	91820349	91820549	+	1	NA	NA	NA	91078	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.030000	0.457711	-91(ACCTTTTAAAGA,-,0.00),-90(CCTTTTAAAGAA,+,0.00)
mm_76140.1	chr8	81780472	81780672	-	1	NA	NA	NA	438010	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.005000	0.527363	-32(CACTATAAAAGG,-,0.00)
mm_133401.1	chr16	84834821	84835021	+	1	NA	NA	NA	77	NM_001302216	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.105000	0.656716	
mm_149557.1	chr19	12633416	12633616	+	1	NA	NA	NA	208	NM_145935	107146	Mm.39974	NM_145935	ENSMUSG00000063683	Glyat	A330009E03Rik|ACGNAT|AI195249|AI315345|CAT|GAT	glycine-N-acyltransferase	protein-coding	0.015000	0.432836	
mm_145990.1	chr18	68314457	68314657	+	1	NA	NA	NA	14202	NM_001170953	67897	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	0.000000	0.378109	
mm_46385.1	chr5	104017678	104017878	-	1	NA	NA	NA	4018	NM_053262	114664	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0.015000	0.512438	
mm_10824.1	chr2	24379023	24379223	+	1	NA	NA	NA	-6274	NM_177611	215632	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.015000	0.492537	20(GTTTTAATGGAC,+,0.00)
mm_13853.1	chr2	119674979	119675179	+	1	NA	NA	NA	11	NM_030112	76246	Mm.33437	NM_030112	ENSMUSG00000027304	Rtf1	2900005O08Rik|6530416A09Rik|AI853581|AU043144|AW553985|Gtl7|cbp82	RTF1, Paf1/RNA polymerase II complex component	protein-coding	0.170000	0.815920	
mm_132554.1	chr16	37883971	37884171	+	1	NA	NA	NA	15671	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.015000	0.437811	
mm_43008.1	chr5	123662128	123662328	+	1	NA	NA	NA	22133	NM_019765	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.020000	0.467662	-33(ACTCTTAAAAGG,-,0.00)
mm_91676.1	chr10	43456445	43456645	-	1	NA	NA	NA	-22595	NM_199028	331623	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.035000	0.482587	
mm_130985.1	chr15	103353671	103353871	-	1	NA	NA	NA	-3246	NR_105928	102466775		NR_105928	ENSMUSG00000098419	Mir6963	Gm27724|mmu-mir-6963	microRNA 6963	ncRNA	0.015000	0.552239	
mm_86769.1	chr10	19934205	19934405	+	1	NA	NA	NA	-221	NM_008580	26408	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.155000	0.781095	
mm_90475.1	chr10	127866349	127866549	+	1	NA	NA	NA	-27	NM_145424	216454	Mm.214923	NM_145424	ENSMUSG00000074639	BC089597	CRAD-L	cDNA sequence BC089597	protein-coding	0.005000	0.452736	
mm_121164.1	chr14	103012779	103012979	+	1	NA	NA	NA	20924	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.010000	0.547264	
mm_91705.1	chr10	44022187	44022387	-	1	NA	NA	NA	-17441	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.015000	0.492537	
mm_20878.1	chr2	148732360	148732560	-	1	NA	NA	NA	-40	NM_019632	17957	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	0.055000	0.626866	
mm_65283.1	chr7	24433491	24433691	-	1	NA	NA	NA	12091	NM_199013	210145	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.010000	0.522388	
mm_62107.1	chr7	96456218	96456418	+	1	NA	NA	NA	-114354	NR_046043	670727	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	OTTMUSG00000021245	predicted gene 15412	ncRNA	0.000000	0.482587	
mm_90913.1	chr10	12406754	12406954	-	1	NA	NA	NA	454881	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.000000	0.393035	-40(TTATTTATAGGC,+,0.00)
mm_102459.1	chr11	59839685	59839885	-	1	NA	NA	NA	-18	NM_011991	26572	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	0.080000	0.641791	
mm_60102.1	chr7	35334219	35334419	+	1	NA	NA	NA	82	NM_027897	52428	Mm.286600	NM_027897	ENSMUSG00000030494	Rhpn2	1300002E07Rik|AA536890|C85860|D7Ertd784e	rhophilin, Rho GTPase binding protein 2	protein-coding	0.095000	0.711443	
mm_111294.1	chr12	85473250	85473450	-	1	NA	NA	NA	-551	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.030000	0.492537	30(CAGCCTTAAAGG,-,0.00),31(AGCCTTAAAGGC,-,0.00),33(CCTTAAAGGCTC,+,0.00)
mm_11272.1	chr2	30061787	30061987	+	1	NA	NA	NA	-109	NM_023871	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.075000	0.676617	
mm_10086.1	chr2	3118264	3118464	+	1	NA	NA	NA	-24	NM_001081161	269233	Mm.23044	NM_001081161	ENSMUSG00000050530	Fam171a1	9630050M13Rik|AA409679	family with sequence similarity 171, member A1	protein-coding	0.160000	0.830846	
mm_95791.1	chr11	54961606	54961806	+	1	NA	NA	NA	1234	NM_021327	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.015000	0.552239	
mm_133751.1	chr16	94410742	94410942	+	1	NA	NA	NA	-39827	NM_001159617	56176	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0.030000	0.487562	
mm_51046.1	chr6	65625333	65625533	+	1	NA	NA	NA	35035	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.000000	0.288557	
mm_8627.1	chr1	156270726	156270926	-	1	NA	NA	NA	32522	NM_001134741	214575	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	0.015000	0.348259	
mm_4363.1	chr1	172026762	172026962	+	1	NA	NA	NA	433	NM_033509	93840	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	vang-like 2 (van gogh, Drosophila)	protein-coding	0.030000	0.557214	
mm_100608.1	chr11	121308269	121308469	+	1	NA	NA	NA	46078	NM_025793	66840	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0.015000	0.422886	
mm_95719.1	chr11	54522784	54522984	+	1	NA	NA	NA	39	NM_001252496	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.120000	0.666667	
mm_131882.1	chr16	23224798	23224998	+	1	NA	NA	NA	158	NM_145933	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.050000	0.557214	
mm_70577.1	chr8	13165837	13166037	+	1	NA	NA	NA	6776	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.020000	0.512438	
mm_25274.1	chr3	105094894	105095094	+	1	NA	NA	NA	28150	NM_029228	75269	Mm.307994	NM_029228	ENSMUSG00000051788	4930564D02Rik	-	RIKEN cDNA 4930564D02 gene	protein-coding	0.005000	0.328358	
mm_136402.1	chr16	93598261	93598461	-	1	NA	NA	NA	5454	NM_145482	224440	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	0.025000	0.507463	
mm_11004.1	chr2	26498334	26498534	+	1	NA	NA	NA	5388	NM_008714	18128	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0.025000	0.562189	
mm_62543.1	chr7	102317350	102317550	+	1	NA	NA	NA	49626	NM_009287	20866	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0.010000	0.378109	
mm_143419.1	chr17	70842407	70842607	-	1	NA	NA	NA	4270	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.000000	0.323383	
mm_1960.1	chr1	86426236	86426436	+	1	NA	NA	NA	7	NM_027966	71863	Mm.179627	NM_027966	ENSMUSG00000036574	1700019O17Rik	-	RIKEN cDNA 1700019O17 gene	protein-coding	0.010000	0.567164	
mm_154587.1	chrX	7573126	7573326	+	1	NA	NA	NA	-374	NR_029473	78185	Mm.160055	NR_029473	ENSMUSG00000039545	Ppp1r3fos	4930524L23Rik	protein phosphatase 1, regulatory subunit 3F, opposite strand	ncRNA	0.020000	0.636816	
mm_118844.1	chr14	25661320	25661520	+	1	NA	NA	NA	-32750	NM_134084	105675	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.040000	0.646766	
mm_90905.1	chr10	11082230	11082430	-	1	NA	NA	NA	1	NM_001114333	14816	Mm.391904	NM_016976	ENSMUSG00000019828	Grm1	4930455H15Rik|ENSMUSG00000075319|Gm10828|Gprc1a|mGluR1|nmf373|rcw|wobl	glutamate receptor, metabotropic 1	protein-coding	0.040000	0.557214	
mm_103208.1	chr11	70652868	70653068	-	1	NA	NA	NA	1682	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.020000	0.487562	
mm_58184.1	chr6	142964064	142964264	-	1	NA	NA	NA	288	NM_011374	20449	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0.100000	0.706468	
mm_126743.1	chr15	85734817	85735017	+	1	NA	NA	NA	-647	NM_001113418	19013	Mm.212789	NM_011144	ENSMUSG00000022383	Ppara	4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar	peroxisome proliferator activated receptor alpha	protein-coding	0.075000	0.681592	
mm_30458.1	chr3	153944339	153944539	-	1	NA	NA	NA	204	NM_007382	11364	Mm.10530	NM_007382	ENSMUSG00000062908	Acadm	AU018656|MCAD	acyl-Coenzyme A dehydrogenase, medium chain	protein-coding	0.085000	0.696517	
mm_36623.1	chr4	91371892	91372092	-	1	NA	NA	NA	63	NM_010486	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding	0.135000	0.741294	
mm_31656.1	chr4	59873671	59873871	+	1	NA	NA	NA	41285	NM_021053	30936	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0.000000	0.412935	
mm_5802.1	chr1	52190808	52191008	-	1	NA	NA	NA	42324	NM_001081081	14660	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.000000	0.393035	-33(CCTTTAAAATGC,+,0.00)
mm_103031.1	chr11	69735281	69735481	-	1	NA	NA	NA	23252	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.010000	0.557214	
mm_43489.1	chr5	136919509	136919709	+	1	NA	NA	NA	463	NR_015555	66752	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	0.030000	0.601990	
mm_171080.1	chr3	121249864	121250064	-	1	NA	NA	NA	13352	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0.025000	0.477612	
mm_60794.1	chr7	45575174	45575374	+	1	NA	NA	NA	-98	NR_038165	71661	Mm.439894	NR_038165	ENSMUSG00000109644	0610005C13Rik	AI182092	RIKEN cDNA 0610005C13 gene	ncRNA	0.020000	0.592040	
mm_9344.1	chr1	172066414	172066614	-	1	NA	NA	NA	-8918	NM_010916	18071	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	0.005000	0.522388	
mm_39772.1	chr5	30013997	30014197	+	1	NA	NA	NA	983	NM_031168	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.005000	0.477612	
mm_154234.1	chr19	60537426	60537626	-	1	NA	NA	NA	43497	NM_001172097	78832	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	0.000000	0.278607	
mm_95421.1	chr11	50131284	50131484	+	1	NA	NA	NA	24	NM_029745	76795	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.155000	0.766169	
mm_19006.1	chr2	76889665	76889865	-	1	NA	NA	NA	92782	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.025000	0.432836	
mm_95766.1	chr11	54907125	54907325	+	1	NA	NA	NA	4371	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.020000	0.482587	-25(TTCCTTTTAAGC,-,0.00),-23(CCTTTTAAGCAG,+,0.00)
mm_68193.1	chr7	104369757	104369957	-	1	NA	NA	NA	-11211	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.005000	0.462687	
mm_57363.1	chr6	124766040	124766240	-	1	NA	NA	NA	3533	NM_001302642	13807	Mm.3913	NM_013509	ENSMUSG00000004267	Eno2	AI837106|D6Ertd375e|Eno-2|NSE	enolase 2, gamma neuronal	protein-coding	0.035000	0.592040	
mm_168538.1	chr11	61930161	61930361	-	1	NA	NA	NA	-4	NM_019921	56697	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0.135000	0.756219	
mm_41680.1	chr5	99978577	99978777	+	1	NA	NA	NA	261	NM_001077266	11991	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.170000	0.721393	
mm_71574.1	chr8	54529520	54529720	+	1	NA	NA	NA	378	NM_029701	76687	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.120000	0.736318	
mm_97203.1	chr11	75598188	75598388	+	1	NA	NA	NA	1943	NR_110477	654359	Mm.439961	NR_110477		Gm12338	OTTMUSG00000006216	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.020000	0.542289	
mm_25497.1	chr3	109371823	109372023	+	1	NA	NA	NA	31240	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.000000	0.288557	
mm_8996.1	chr1	165709686	165709886	-	1	NA	NA	NA	-1692	NM_001038846	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.020000	0.562189	28(CCTTAAAGACTC,+,0.00)
mm_163737.1	chr13	119690362	119690562	+	1	NA	NA	NA	111	NM_001291439	208715	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	0.095000	0.691542	
mm_10542.1	chr2	16531966	16532166	+	1	NA	NA	NA	175762	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.000000	0.263682	
mm_152616.1	chr19	12434759	12434959	-	1	NA	NA	NA	6954	NM_019540	56093	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.005000	0.482587	-78(ACCCATAAAAGT,-,0.00)
mm_81712.1	chr9	111312015	111312215	+	1	NA	NA	NA	376	NM_001164659	320429	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	0.175000	0.766169	
mm_53005.1	chr6	123270584	123270784	+	1	NA	NA	NA	8577	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.000000	0.243781	
mm_61312.1	chr7	68059005	68059205	+	1	NA	NA	NA	106848	NM_010513	16001	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.000000	0.482587	42(GGCTTTATAGAC,-,0.00)
mm_125783.1	chr15	74716416	74716616	+	1	NA	NA	NA	1677	NM_028216	72373	Mm.46395	NM_028216	ENSMUSG00000022598	Psca	2210408B04Rik	prostate stem cell antigen	protein-coding	0.025000	0.601990	
mm_160069.1	chr7	6197202	6197402	+	1	NA	NA	NA	212	NM_178028	232836	Mm.246599	NM_178028	ENSMUSG00000034660	Galp	-	galanin-like peptide	protein-coding	0.025000	0.631841	
mm_164586.1	chr17	26508858	26509058	+	1	NA	NA	NA	-486	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.045000	0.542289	46(CACTTTAAAAGT,-,0.00)
mm_101169.1	chr11	16981733	16981933	-	1	NA	NA	NA	26885	NM_019549	56193	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.010000	0.467662	
mm_90463.1	chr10	127759691	127759891	+	1	NA	NA	NA	28	NM_080436	107605	Mm.484271	NM_080436	ENSMUSG00000089789	Rdh1	-	retinol dehydrogenase 1 (all trans)	protein-coding	0.000000	0.457711	
mm_109809.1	chr12	3356919	3357119	-	1	NA	NA	NA	-8113	NM_008445	16570	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.045000	0.582090	
mm_60446.1	chr7	44477127	44477327	+	1	NA	NA	NA	6880	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.482587	
mm_27924.1	chr3	79549441	79549641	-	1	NA	NA	NA	18138	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.025000	0.412935	
mm_167538.1	chr9	22003221	22003421	+	1	NA	NA	NA	333	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.040000	0.537313	
mm_118808.1	chr14	25459147	25459347	+	1	NA	NA	NA	62	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.105000	0.606965	
mm_47665.1	chr5	126504875	126505075	-	1	NA	NA	NA	-525814	NR_040685	71247	Mm.399586	NR_040685	ENSMUSG00000105490	4933438B17Rik	-	RIKEN cDNA 4933438B17 gene	ncRNA	0.000000	0.398010	
mm_159082.1	chr2	27067824	27068024	-	1	NA	NA	NA	-56	NM_001159602	66139	Mm.330087	NM_025376	ENSMUSG00000009214	Tmem8c	1110002H13Rik|AI131587	transmembrane protein 8C	protein-coding	0.005000	0.442786	
mm_131744.1	chr16	22095946	22096146	+	1	NA	NA	NA	67253	NM_183029	319765	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.000000	0.412935	
mm_139804.1	chr17	66123508	66123708	+	1	NA	NA	NA	88	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.100000	0.646766	
mm_135771.1	chr16	56831714	56831914	-	1	NA	NA	NA	-35956	NM_172825	239853	Mm.258979	NM_172825	ENSMUSG00000022755	Adgrg7	9130020O16Rik|Gpr128	adhesion G protein-coupled receptor G7	protein-coding	0.025000	0.472637	
mm_126616.1	chr15	83100212	83100412	+	1	NA	NA	NA	107	NM_023475	68607	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	0.050000	0.626866	
mm_143987.1	chr17	87637004	87637204	-	1	NA	NA	NA	1125	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.105000	0.721393	
mm_8265.1	chr1	139376876	139377076	-	1	NA	NA	NA	100	NM_133239	170788	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	0.000000	0.522388	
mm_76949.1	chr8	105989302	105989502	-	1	NA	NA	NA	2371	NM_001301204	319446	Mm.248357	NM_176913	ENSMUSG00000053687	Dpep2	F630103D06Rik|MBD-2	dipeptidase 2	protein-coding	0.015000	0.467662	
mm_60457.1	chr7	44477531	44477731	+	1	NA	NA	NA	-6886	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.010000	0.407960	
mm_24213.1	chr3	88629371	88629571	+	1	NA	NA	NA	8077	NM_001198912	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.045000	0.626866	
mm_172832.1	chr9	22903512	22903712	-	1	NA	NA	NA	-319464	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.060000	0.636816	
mm_99507.1	chr11	103043071	103043271	+	1	NA	NA	NA	14609	NM_008707	18107	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.020000	0.432836	
mm_119687.1	chr14	53530655	53530855	+	1	NA	NA	NA	723174	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.467662	
mm_26925.1	chr3	20249674	20249874	-	1	NA	NA	NA	-7593	NM_007753	12873	Mm.1135	NM_007753	ENSMUSG00000001865	Cpa3	MC-CPA	carboxypeptidase A3, mast cell	protein-coding	0.020000	0.462687	
mm_33598.1	chr4	132568403	132568603	+	1	NA	NA	NA	4436	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.020000	0.487562	
mm_20581.1	chr2	131146723	131146923	-	1	NA	NA	NA	13197	NM_026091	67326	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	0.035000	0.636816	
mm_82823.1	chr9	31120766	31120966	-	1	NA	NA	NA	10933	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.005000	0.527363	
mm_167419.1	chr8	110962750	110962950	+	1	NA	NA	NA	34973	NM_007916	13680	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	0.005000	0.447761	29(ACATATAAAAGG,-,0.00)
mm_33529.1	chr4	130932219	130932419	+	1	NA	NA	NA	-12066	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.000000	0.437811	
mm_154088.1	chr19	56815673	56815873	-	1	NA	NA	NA	-2090	NM_170757	213993	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0.025000	0.442786	
mm_117413.1	chr13	74208590	74208790	-	1	NA	NA	NA	10	NM_177333	211446	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0.100000	0.661692	
mm_85279.1	chr9	99568780	99568980	-	1	NA	NA	NA	19	NM_001166138	74125	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	0.095000	0.701493	
mm_159632.1	chr4	138250216	138250416	+	1	NA	NA	NA	-95	NM_001099631	230863	Mm.482408	NM_001099631	ENSMUSG00000045349	Sh2d5	BC036961	SH2 domain containing 5	protein-coding	0.120000	0.746269	
mm_69556.1	chr7	135699911	135700111	-	1	NA	NA	NA	16368	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.005000	0.422886	
mm_111926.1	chr12	108884241	108884441	-	1	NA	NA	NA	8857	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.010000	0.432836	
mm_125353.1	chr15	39391712	39391912	+	1	NA	NA	NA	193526	NM_053271	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.020000	0.462687	-31(TTTTTAATAGGC,+,0.00)
mm_967.1	chr1	58122140	58122340	+	1	NA	NA	NA	9104	NM_023617	71724	Mm.20108	NM_023617	ENSMUSG00000064294	Aox3	1200011D03Rik|AI326299|Aoh1|Aoh2	aldehyde oxidase 3	protein-coding	0.010000	0.427861	
mm_97065.1	chr11	72881692	72881892	+	1	NA	NA	NA	-79377	NM_016745	53313	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0.000000	0.368159	
mm_115995.1	chr13	24400246	24400446	-	1	NA	NA	NA	-14776	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.005000	0.288557	
mm_4209.1	chr1	171266628	171266828	+	1	NA	NA	NA	-3600	NM_020579	57370	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	0.015000	0.477612	-33(GCATTTATAGAC,+,0.00)
mm_69169.1	chr7	127214957	127215157	-	1	NA	NA	NA	3388	NM_017461	54204	Mm.18	NM_017461	ENSMUSG00000000486	Sept1	Diff6|Pnutl3	septin 1	protein-coding	0.040000	0.532338	
mm_110508.1	chr12	54695721	54695921	-	1	NA	NA	NA	73	NM_001331162	66266	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	0.110000	0.656716	
mm_78132.1	chr9	20868632	20868832	+	1	NA	NA	NA	90	NM_175687	319278	Mm.249932	NM_175687	ENSMUSG00000038884	A230050P20Rik	RyDEN	RIKEN cDNA A230050P20 gene	protein-coding	0.125000	0.701493	
mm_22748.1	chr3	19957249	19957449	+	1	NA	NA	NA	295	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.015000	0.368159	
mm_158142.1	chrX	103428275	103428475	-	1	NA	NA	NA	-3142	NR_002844	22097	Mm.472939	NR_002844	ENSMUSG00000085715	Tsix	-	X (inactive)-specific transcript, opposite strand	ncRNA	0.000000	0.487562	
mm_55062.1	chr6	49047902	49048102	-	1	NA	NA	NA	11484	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.035000	0.552239	
mm_111676.1	chr12	103355641	103355841	-	1	NA	NA	NA	260	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.005000	0.492537	
mm_51447.1	chr6	80214669	80214869	+	1	NA	NA	NA	195126	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.000000	0.402985	61(CTTTTTCTGGCC,+,0.00),70(GCCTCTATGAGC,-,0.00)
mm_139080.1	chr17	46681011	46681211	+	1	NA	NA	NA	-10	NM_010787	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.090000	0.691542	
mm_104334.1	chr11	93996730	93996930	-	1	NA	NA	NA	739	NM_027569	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.045000	0.601990	
mm_134473.1	chr16	18586898	18587098	-	1	NA	NA	NA	-29	NM_001285476	21380	Mm.295194	NM_011532	ENSMUSG00000009097	Tbx1	-	T-box 1	protein-coding	0.180000	0.805970	
mm_139843.1	chr17	69289579	69289779	+	1	NA	NA	NA	-12473	NR_045428	69750	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.005000	0.258706	
mm_106357.1	chr11	118393582	118393782	-	1	NA	NA	NA	8249	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.025000	0.567164	
mm_117942.1	chr13	99434737	99434937	-	1	NA	NA	NA	-22011	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.030000	0.467662	
mm_79618.1	chr9	58653035	58653235	+	1	NA	NA	NA	70895	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.010000	0.427861	
mm_143833.1	chr17	84083552	84083752	-	1	NA	NA	NA	4992	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.005000	0.407960	
mm_78136.1	chr9	20888193	20888393	+	1	NA	NA	NA	118	NM_145610	235036	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog (Drosophila)	protein-coding	0.105000	0.696517	
mm_107369.1	chr12	32850582	32850782	+	1	NA	NA	NA	26566	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.020000	0.388060	
mm_136088.1	chr16	84955327	84955527	-	1	NA	NA	NA	-16784	NR_045889	100038614	Mm.441351	NR_045889		Gm10791	ENSMUSG00000074933	predicted gene 10791	ncRNA	0.050000	0.502488	-59(TCCTTTAAAGTC,+,0.00),-58(CCTTTAAAGTCC,+,0.00)
mm_147491.1	chr18	47368599	47368799	-	1	NA	NA	NA	169	NM_018744	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.070000	0.631841	
mm_135356.1	chr16	43889523	43889723	-	1	NA	NA	NA	53	NM_029128	106248	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrtd1	3110012M05Rik|4930470H18Rik|AI648807|Qtrt2	queuine tRNA-ribosyltransferase domain containing 1	protein-coding	0.070000	0.537313	
mm_40173.1	chr5	35913611	35913811	+	1	NA	NA	NA	20392	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	0.030000	0.462687	
mm_116924.1	chr13	55536426	55536626	-	1	NA	NA	NA	132	NM_134059	72935	Mm.205045	NM_134059	ENSMUSG00000021494	Ddx41	2900024F02Rik|AA958953|ABS|AI324246	DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	protein-coding	0.085000	0.626866	
mm_18259.1	chr2	52286017	52286217	-	1	NA	NA	NA	-4885	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.030000	0.507463	
mm_3497.1	chr1	150106715	150106915	+	1	NA	NA	NA	6784	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.447761	
mm_16374.1	chr2	178141782	178141982	+	1	NA	NA	NA	-51	NM_028806	74189	Mm.44413	NM_028806	ENSMUSG00000027525	Phactr3	1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224	phosphatase and actin regulator 3	protein-coding	0.020000	0.472637	
mm_37969.1	chr4	133498393	133498593	-	1	NA	NA	NA	57	NM_001081156	69539	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	0.100000	0.726368	
mm_69428.1	chr7	132813073	132813273	-	1	NA	NA	NA	23	NM_212473	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.090000	0.631841	
mm_109030.1	chr12	104084080	104084280	+	1	NA	NA	NA	6221	NR_002861	321018	Mm.297023	NR_002861		Serpina4-ps1	KALps|Klst	serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1	pseudo	0.000000	0.427861	
mm_5097.1	chr1	4880596	4880796	-	1	NA	NA	NA	22368	NM_001159751	21399	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.065000	0.537313	
mm_90888.1	chr10	10234749	10234949	-	1	NA	NA	NA	237465	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.030000	0.507463	
mm_158322.1	chrX	133898235	133898435	-	1	NA	NA	NA	94	NM_019656	56496	Mm.46701	NM_019656	ENSMUSG00000067377	Tspan6	6720473L21Rik|AI316786|T245|TSPAN-6|Tm4sf|Tm4sf6	tetraspanin 6	protein-coding	0.090000	0.552239	
mm_150185.1	chr19	32665334	32665534	+	1	NA	NA	NA	45429	NM_011864	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.030000	0.497512	
mm_21574.1	chr2	164237035	164237235	-	1	NA	NA	NA	1206	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.407960	
mm_20163.1	chr2	122151018	122151218	-	1	NA	NA	NA	3431	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.020000	0.487562	
mm_37256.1	chr4	118436691	118436891	-	1	NA	NA	NA	552	NM_023223	107995	Mm.261764	NM_023223	ENSMUSG00000006398	Cdc20	2310042N09Rik|C87100|p55CDC	cell division cycle 20	protein-coding	0.030000	0.572139	
mm_168985.1	chr12	95340444	95340644	+	1	NA	NA	NA	-351682	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.045000	0.522388	
mm_166539.1	chr6	31165286	31165486	+	1	NA	NA	NA	53088	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.010000	0.452736	
mm_173010.1	chrM	223	423	+	1	NA	NA	NA	NA	NA									0.045000	0.353234	
mm_136187.1	chr16	88981730	88981930	-	1	NA	NA	NA	-18957	NM_183296	71369	Mm.251757	NM_130872	ENSMUSG00000096534	Krtap16-3	5430404J20Rik|Krtap16-10	keratin associated protein 16-3	protein-coding	0.015000	0.467662	
mm_154455.1	chrM	2275	2475	-	1	NA	NA	NA	NA	NA									0.030000	0.378109	-99(CCATTAATAGCT,+,0.00),-24(TCTTAAATAGGA,+,0.00)
mm_64321.1	chr7	141949643	141949843	+	1	NA	NA	NA	-8	NM_001009930	75770	Mm.274868	NM_029426	ENSMUSG00000053046	Brsk2	4833424K13Rik|SAD-A|SADA	BR serine/threonine kinase 2	protein-coding	0.150000	0.766169	
mm_171212.1	chr3	5860392	5860592	+	1	NA	NA	NA	-284244	NM_001163305	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.055000	0.492537	
mm_147285.1	chr18	39489061	39489261	-	1	NA	NA	NA	-1916	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.095000	0.661692	
mm_61702.1	chr7	81213233	81213433	+	1	NA	NA	NA	-471	NM_008803	18584	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.155000	0.746269	
mm_95355.1	chr11	48837373	48837573	+	1	NA	NA	NA	2	NM_001347446	94089	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.080000	0.676617	
mm_65559.1	chr7	27166396	27166596	-	1	NA	NA	NA	306	NM_053208	112406	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0.135000	0.791045	
mm_36435.1	chr4	82294823	82295023	-	1	NA	NA	NA	210856	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.005000	0.293532	
mm_94551.1	chr11	11462409	11462609	+	1	NA	NA	NA	-90	NM_001185153	53604	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	0.025000	0.512438	
mm_16881.1	chr2	13010740	13010940	-	1	NA	NA	NA	24	NM_153155	227580	Mm.229322	NM_153155	ENSMUSG00000049630	C1ql3	1110065A22Rik|AI661623|C1ql|C1qtnf13|CTRP13|K100	C1q-like 3	protein-coding	0.090000	0.676617	
mm_152111.1	chr19	6951394	6951594	-	1	NA	NA	NA	8932	NM_001285453	12015	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.070000	0.606965	
mm_78191.1	chr9	21330261	21330461	+	1	NA	NA	NA	-7467	NM_152808	68682	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0.025000	0.512438	
mm_20296.1	chr2	126933774	126933974	-	1	NA	NA	NA	-639	NM_023220	66552	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	0.000000	0.407960	
mm_54880.1	chr6	42692996	42693196	-	1	NA	NA	NA	-37	NM_029930	77574	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding	0.075000	0.636816	
mm_54750.1	chr6	41033087	41033287	-	1	NA	NA	NA	2322	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.417910	
mm_10983.1	chr2	25889117	25889317	+	1	NA	NA	NA	11434	NM_001302351	227632	Mm.119462	NM_175462	ENSMUSG00000058740	Kcnt1	C030030G16Rik|Slack|Slo2.2|slo2	potassium channel, subfamily T, member 1	protein-coding	0.015000	0.522388	
mm_10652.1	chr2	20669619	20669819	+	1	NA	NA	NA	150206	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.015000	0.452736	
mm_14953.1	chr2	151999780	151999980	+	1	NA	NA	NA	14	NM_001164820	69698	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	0.040000	0.656716	
mm_108917.1	chr12	100729289	100729489	+	1	NA	NA	NA	-4269	NM_153587	73086	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0.025000	0.532338	
mm_88576.1	chr10	79682140	79682340	+	1	NA	NA	NA	45	NM_177613	216150	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|UBE2R1	cell division cycle 34	protein-coding	0.185000	0.825871	
mm_169681.1	chr15	70416529	70416729	+	1	NA	NA	NA	492396	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA	0.005000	0.512438	-38(GGGTATTTAAGG,-,0.00)
mm_65372.1	chr7	25072999	25073199	-	1	NA	NA	NA	-730	NM_008168	14809	Mm.2879	NM_008168	ENSMUSG00000003378	Grik5	GluK5|GluRgamma2|KA2	glutamate receptor, ionotropic, kainate 5 (gamma 2)	protein-coding	0.030000	0.701493	
mm_15254.1	chr2	154861750	154861950	+	1	NA	NA	NA	31056	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.040000	0.542289	
mm_161740.1	chr17	32659472	32659672	+	1	NA	NA	NA	89	NM_001101588	631304	Mm.328950	NM_001101588	ENSMUSG00000090700	Cyp4f40	EG631304	cytochrome P450, family 4, subfamily f, polypeptide 40	protein-coding	0.025000	0.502488	
mm_53301.1	chr6	129057132	129057332	+	1	NA	NA	NA	11331	NR_024263	232408	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.000000	0.368159	
mm_36790.1	chr4	103114128	103114328	-	1	NA	NA	NA	71	NM_146254	242584	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	0.100000	0.676617	52(TGGTCTAAAAAG,-,0.00)
mm_126365.1	chr15	80098092	80098292	+	1	NA	NA	NA	6858	NM_207708	20972	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0.020000	0.557214	
mm_155000.1	chrX	39346165	39346365	+	1	NA	NA	NA	-1	NM_001177380	78631	Mm.243738	NM_001177380	ENSMUSG00000079619	Cypt15	1700085A12Rik	cysteine-rich perinuclear theca 15	protein-coding	0.005000	0.487562	
mm_48549.1	chr5	142905724	142905924	-	1	NA	NA	NA	930	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.105000	0.711443	-33(CCTTTTATGGTA,+,0.00)
mm_9632.1	chr1	176814002	176814202	-	1	NA	NA	NA	-558	NM_029756	76816	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	0.095000	0.681592	
mm_121609.1	chr14	8258792	8258992	-	1	NA	NA	NA	-53	NM_001161667	93732	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0.010000	0.547264	20(GGGCCTATAGGG,-,0.00)
mm_131999.1	chr16	25385796	25385996	+	1	NA	NA	NA	99079	NM_175165	71338	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding	0.005000	0.398010	
mm_58556.1	chr7	4740841	4741041	+	1	NA	NA	NA	814	NM_001115018	232811	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	0.010000	0.487562	
mm_166290.1	chr5	100660801	100661001	+	1	NA	NA	NA	13355	NM_027978	71883	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0.005000	0.472637	
mm_19120.1	chr2	80038844	80039044	-	1	NA	NA	NA	90027	NM_016744	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.010000	0.467662	8(CTGTTTTAAAGA,-,0.00)
mm_82581.1	chr9	21149836	21150036	-	1	NA	NA	NA	-30	NM_016742	12539	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0.130000	0.726368	
mm_2160.1	chr1	88212591	88212791	+	1	NA	NA	NA	732	NM_201645	394436	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0.020000	0.472637	
mm_109900.1	chr12	7901561	7901761	-	1	NA	NA	NA	-76016	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.030000	0.572139	
mm_111254.1	chr12	84951195	84951395	-	1	NA	NA	NA	19591	NM_178065	68497	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	0.005000	0.442786	
mm_173298.1	chrY	50104217	50104417	+	1	NA	NA	NA	-259190	NM_001160143	100040031	Mm.463839	NM_001160143	ENSMUSG00000093950	Gm20823	-	predicted gene, 20823	protein-coding	0.005000	0.402985	
mm_59992.1	chr7	30554847	30555047	+	1	NA	NA	NA	1645	NM_001012401	243912	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	0.025000	0.547264	
mm_144081.1	chr17	91092974	91093174	-	1	NA	NA	NA	-272	NM_020252	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.015000	0.532338	
mm_93418.1	chr10	108691044	108691244	-	1	NA	NA	NA	9016	NM_203660	368203	Mm.452758	NM_203660		Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding	0.015000	0.462687	
mm_15474.1	chr2	157560011	157560211	+	1	NA	NA	NA	33	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.075000	0.656716	
mm_169417.1	chr14	53078358	53078558	+	1	NA	NA	NA	-582763	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.005000	0.457711	
mm_10916.1	chr2	25395823	25396023	+	1	NA	NA	NA	49	NM_009849	12496	Mm.482100	NM_009849	ENSMUSG00000015085	Entpd2	Cd39l1|NTPDase2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding	0.065000	0.706468	
mm_147774.1	chr18	61484667	61484867	-	1	NA	NA	NA	-160	NR_045419	442846	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.030000	0.462687	
mm_13462.1	chr2	105675391	105675591	+	1	NA	NA	NA	-253	NM_001244200	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.055000	0.552239	
mm_138343.1	chr17	34914161	34914361	+	1	NA	NA	NA	-205	NM_023557	70129	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22	solute carrier family 44, member 4	protein-coding	0.020000	0.517413	
mm_137778.1	chr17	29492971	29493171	+	1	NA	NA	NA	2026	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.015000	0.472637	71(GTGTATAAAGGC,-,0.00)
mm_83986.1	chr9	57427920	57428120	-	1	NA	NA	NA	12094	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.010000	0.527363	
mm_58534.1	chr7	4460609	4460809	+	1	NA	NA	NA	-4026	NM_026146	67425	Mm.360392	NM_026146	ENSMUSG00000006154	Eps8l1	2310051G19Rik|4632407K17Rik|AW060268|DRC3|EPS8R1	EPS8-like 1	protein-coding	0.040000	0.547264	
mm_15723.1	chr2	164078088	164078288	+	1	NA	NA	NA	4010	NM_021420	58231	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.020000	0.417910	
mm_27966.1	chr3	80688356	80688556	-	1	NA	NA	NA	114335	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.015000	0.398010	
mm_91547.1	chr10	39731824	39732024	-	1	NA	NA	NA	83	NR_038037	327744	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	0.120000	0.731343	
mm_123806.1	chr14	70521368	70521568	-	1	NA	NA	NA	-1208	NR_033241	12153	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.020000	0.507463	
mm_172980.1	chr9	96895519	96895719	+	1	NA	NA	NA	-6145	NM_001289645	235534	Mm.233031	NM_153420	ENSMUSG00000043587	Pxylp1	9430094M07Rik|Acpl2|BB177120|C130099A20Rik	2-phosphoxylose phosphatase 1	protein-coding	0.070000	0.542289	
mm_79031.1	chr9	46047868	46048068	+	1	NA	NA	NA	35148	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.000000	0.323383	
mm_62135.1	chr7	97081711	97081911	+	1	NA	NA	NA	60	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.150000	0.741294	
mm_11059.1	chr2	27505752	27505952	+	1	NA	NA	NA	-9295	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.010000	0.522388	
mm_143739.1	chr17	81498403	81498603	-	1	NA	NA	NA	239884	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.000000	0.452736	
mm_129081.1	chr15	75888670	75888870	-	1	NA	NA	NA	-47	NM_001282443	223645		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0.065000	0.666667	
mm_111177.1	chr12	83827532	83827732	-	1	NA	NA	NA	14726	NM_001272055	18222	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	numb homolog (Drosophila)	protein-coding	0.015000	0.318408	
mm_36598.1	chr4	88744251	88744451	-	1	NA	NA	NA	-10517	NM_001085528	435791	Mm.473673	NM_001085528	ENSMUSG00000094618	Gm13271	Ifnz|OTTMUSG00000011262	predicted gene 13271	protein-coding	0.005000	0.517413	
mm_138421.1	chr17	35069450	35069650	+	1	NA	NA	NA	2225	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.020000	0.577114	
mm_119378.1	chr14	41134006	41134206	+	1	NA	NA	NA	2318	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.010000	0.512438	
mm_142833.1	chr17	51782799	51782999	-	1	NA	NA	NA	29155	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.025000	0.587065	
mm_46180.1	chr5	97111476	97111676	-	1	NA	NA	NA	20	NM_198422	231474	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.140000	0.766169	
mm_19098.1	chr2	79453112	79453312	-	1	NA	NA	NA	3424	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.010000	0.318408	
mm_94167.1	chr10	128804051	128804251	-	1	NA	NA	NA	219	NM_178066	73827	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	0.035000	0.547264	
mm_146476.1	chr18	89197147	89197347	+	1	NA	NA	NA	-180	NM_178687	225825	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.015000	0.358209	
mm_134346.1	chr16	16571012	16571212	-	1	NA	NA	NA	-10893	NM_139232	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.005000	0.333333	
mm_53724.1	chr6	144672795	144672995	+	1	NA	NA	NA	27	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA	0.015000	0.582090	-96(CCTCATAGGGGC,+,0.00)
mm_19276.1	chr2	85518870	85519070	-	1	NA	NA	NA	-35	NM_001081664	228151	Mm.17636	NM_001081664	ENSMUSG00000075217	4833423E24Rik	Fads2p1|Gm113	RIKEN cDNA 4833423E24 gene	protein-coding	0.005000	0.472637	
mm_71259.1	chr8	40917581	40917781	+	1	NA	NA	NA	-8552	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.010000	0.323383	
mm_98761.1	chr11	96572384	96572584	+	1	NA	NA	NA	107893	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.000000	0.303483	
mm_48242.1	chr5	137747888	137748088	-	1	NA	NA	NA	2019	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.015000	0.507463	
mm_40459.1	chr5	53606827	53607027	+	1	NA	NA	NA	16441	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.000000	0.407960	-32(TGCTCTTAATGG,-,0.00)
mm_89129.1	chr10	85102608	85102808	+	1	NA	NA	NA	81	NM_001013028	103266	Mm.335025	NM_001013028	ENSMUSG00000060935	Tmem263	AI597468	transmembrane protein 263	protein-coding	0.175000	0.825871	
mm_73925.1	chr8	119829556	119829756	+	1	NA	NA	NA	10923	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.040000	0.477612	
mm_71885.1	chr8	69822060	69822260	+	1	NA	NA	NA	-405	NM_020028	53978	Mm.23253	NM_020028	ENSMUSG00000031861	Lpar2	Edg4|IPA2|LPA2	lysophosphatidic acid receptor 2	protein-coding	0.065000	0.646766	
mm_32352.1	chr4	105157163	105157363	+	1	NA	NA	NA	-84	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.035000	0.422886	51(CGCTTTTTAAAG,-,0.00),52(GCTTTTTAAAGG,-,0.00),53(CTTTTTAAAGGC,+,0.00)
mm_23845.1	chr3	83007759	83007959	+	1	NA	NA	NA	135	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.010000	0.542289	
mm_88852.1	chr10	80930591	80930791	+	1	NA	NA	NA	600	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.045000	0.527363	
mm_119736.1	chr14	54121790	54121990	+	1	NA	NA	NA	132039	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.497512	
mm_77082.1	chr8	110521844	110522044	-	1	NA	NA	NA	-19588	NR_105058	100861869	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.035000	0.542289	
mm_86650.1	chr10	17723892	17724092	+	1	NA	NA	NA	764	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.080000	0.646766	
mm_140991.1	chr17	24850205	24850405	-	1	NA	NA	NA	-3	NM_023480	68636	Mm.347964	NM_023480	ENSMUSG00000045316	Fahd1	1110025H10Rik|AV002085	fumarylacetoacetate hydrolase domain containing 1	protein-coding	0.055000	0.641791	
mm_25417.1	chr3	107595051	107595251	+	1	NA	NA	NA	120	NM_007441	11694	Mm.10112	NM_007441	ENSMUSG00000014603	Alx3	-	aristaless-like homeobox 3	protein-coding	0.160000	0.810945	
mm_136021.1	chr16	76336959	76337159	-	1	NA	NA	NA	35990	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.035000	0.457711	-19(CCTTAAATAACC,+,0.00)
mm_25154.1	chr3	103020515	103020715	+	1	NA	NA	NA	69	NM_144901	229663	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0.100000	0.631841	
mm_145435.1	chr18	58836289	58836489	+	1	NA	NA	NA	26	NM_175506	240322	Mm.71963	NM_175506	ENSMUSG00000053441	Adamts19	4831407I23Rik|AU015154|D230034E10Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	protein-coding	0.120000	0.736318	
mm_55459.1	chr6	67491756	67491956	-	1	NA	NA	NA	-1	NM_144548	209590	Mm.221227	NM_144548	ENSMUSG00000049093	Il23r	IL-23R	interleukin 23 receptor	protein-coding	0.010000	0.457711	
mm_160430.1	chr8	88696776	88696976	+	1	NA	NA	NA	-152	NM_001128170	74256	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	0.060000	0.597015	
mm_130124.1	chr15	89591786	89591986	-	1	NA	NA	NA	37	NM_026817	68708	Mm.23258	NM_026817	ENSMUSG00000022621	Rabl2	1110031N17Rik|AW549303|Rabl2a	RAB, member RAS oncogene family-like 2	protein-coding	0.090000	0.696517	
mm_21864.1	chr2	165885681	165885881	-	1	NA	NA	NA	-943	NM_001252587	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.020000	0.562189	
mm_117570.1	chr13	85289060	85289260	-	1	NA	NA	NA	326	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.090000	0.666667	
mm_56748.1	chr6	115991549	115991749	-	1	NA	NA	NA	3356	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.015000	0.597015	
mm_168468.1	chr1	14840152	14840352	-	1	NA	NA	NA	78610	NM_177781	277328	Mm.186329	NM_177781	ENSMUSG00000032769	Trpa1	Anktm1|TRPA1b	transient receptor potential cation channel, subfamily A, member 1	protein-coding	0.045000	0.572139	
mm_101380.1	chr11	23771186	23771386	-	1	NA	NA	NA	-316	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.150000	0.741294	
mm_87209.1	chr10	39732317	39732517	+	1	NA	NA	NA	257	NM_011264	19714	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	0.130000	0.721393	
mm_16721.1	chr2	7322550	7322750	-	1	NA	NA	NA	73350	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.005000	0.303483	66(GCCTATATAGAC,+,0.00),66(GCCTATATAGAC,-,0.00)
mm_137251.1	chr17	24533793	24533993	+	1	NA	NA	NA	-146	NM_177375	328778	Mm.266033	NM_177375	ENSMUSG00000079657	Rab26	A830020M03Rik	RAB26, member RAS oncogene family	protein-coding	0.020000	0.567164	
mm_142781.1	chr17	50136743	50136943	-	1	NA	NA	NA	53654	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.005000	0.447761	
mm_142654.1	chr17	47611329	47611529	-	1	NA	NA	NA	63	NM_016859	53414	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	0.045000	0.537313	
mm_11186.1	chr2	29097620	29097820	+	1	NA	NA	NA	-27272	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.000000	0.437811	-34(CCACATAAAAGG,-,0.00)
mm_66462.1	chr7	44901221	44901421	-	1	NA	NA	NA	5242	NM_027376	70300	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0.035000	0.616915	
mm_138239.1	chr17	34459795	34459995	+	1	NA	NA	NA	16042	NM_030746	632126	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	0.015000	0.477612	
mm_98775.1	chr11	96789032	96789232	+	1	NA	NA	NA	-4	NM_007622	12412	Mm.29055	NM_007622	ENSMUSG00000018666	Cbx1	Cbx|Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1	chromobox 1	protein-coding	0.125000	0.671642	
mm_124508.1	chr14	121915684	121915884	-	1	NA	NA	NA	-10	NM_182806	110168	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	0.030000	0.542289	
mm_19541.1	chr2	98662170	98662370	-	1	NA	NA	NA	1194613	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.025000	0.388060	
mm_57683.1	chr6	128512124	128512324	-	1	NA	NA	NA	14496	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.005000	0.378109	
mm_122217.1	chr14	32317879	32318079	-	1	NA	NA	NA	-4040	NM_001081130	239017	Mm.318302	NM_001081130	ENSMUSG00000021913	Ogdhl	-	oxoglutarate dehydrogenase-like	protein-coding	0.015000	0.522388	
mm_90526.1	chr10	128083815	128084015	+	1	NA	NA	NA	608	NM_016774	11947	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	-	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	0.075000	0.582090	
mm_157018.1	chrX	7740112	7740312	-	1	NA	NA	NA	1112	NM_207202	54648	Mm.63342	NM_207202	ENSMUSG00000031150	Ccdc120	AA030924|DXImx50e|Jm11|Sfc25	coiled-coil domain containing 120	protein-coding	0.025000	0.517413	
mm_130084.1	chr15	89378856	89379056	-	1	NA	NA	NA	298	NM_001013022	70113	Mm.247273	NM_001013022	ENSMUSG00000047394	Odf3b	2010001J22Rik	outer dense fiber of sperm tails 3B	protein-coding	0.040000	0.601990	
mm_117471.1	chr13	76098532	76098732	-	1	NA	NA	NA	28	NM_029847	77041	Mm.196399	NM_029847	ENSMUSG00000021592	Arsk	2810429K17Rik|4833414G15Rik	arylsulfatase K	protein-coding	0.045000	0.517413	
mm_150378.1	chr19	36083651	36083851	+	1	NA	NA	NA	35	NM_019428	54364	Mm.277891	NM_019428	ENSMUSG00000024800	Rpp30	Rnasep2|TSG15	ribonuclease P/MRP 30 subunit	protein-coding	0.070000	0.611940	
mm_77714.1	chr8	126593824	126594024	-	1	NA	NA	NA	-488	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.145000	0.756219	
mm_75504.1	chr8	53638883	53639083	-	1	NA	NA	NA	82	NM_146208	234258	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0.050000	0.636816	
mm_103520.1	chr11	76812348	76812548	-	1	NA	NA	NA	34560	NM_007754	12874	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0.020000	0.437811	
mm_57887.1	chr6	131365261	131365461	-	1	NA	NA	NA	23089	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.010000	0.333333	
mm_116278.1	chr13	34924255	34924455	-	1	NA	NA	NA	-54	NM_025750	66761	Mm.157047	NM_025750	ENSMUSG00000021415	4933417A18Rik	-	RIKEN cDNA 4933417A18 gene	protein-coding	0.000000	0.472637	
mm_65952.1	chr7	30425302	30425502	-	1	NA	NA	NA	2098	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.025000	0.631841	
mm_140547.1	chr17	6948216	6948416	-	1	NA	NA	NA	40	NM_001083945	100037282	Mm.29830	NM_001083945	ENSMUSG00000023806	Rsph3b	Rshl2b	radial spoke 3B homolog (Chlamydomonas)	protein-coding	0.085000	0.676617	
mm_83860.1	chr9	54661750	54661950	-	1	NA	NA	NA	35	NM_053178	94180	Mm.20592	NM_053178	ENSMUSG00000032281	Acsbg1	BG1|Bgm|E230019G03Rik|GR-LACS|Lpd|R75185	acyl-CoA synthetase bubblegum family member 1	protein-coding	0.015000	0.482587	
mm_35560.1	chr4	41569427	41569627	-	1	NA	NA	NA	0	NM_001159583	71901	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	0.080000	0.671642	
mm_133342.1	chr16	81201175	81201375	+	1	NA	NA	NA	578	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.030000	0.402985	
mm_157711.1	chrX	66304054	66304254	-	1	NA	NA	NA	-345164	NM_001161431	245450	Mm.336081	NM_198863	ENSMUSG00000036790	Slitrk2	A930040J07	SLIT and NTRK-like family, member 2	protein-coding	0.005000	0.422886	
mm_140096.1	chr17	78200261	78200461	+	1	NA	NA	NA	113	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.120000	0.716418	
mm_10270.1	chr2	9881408	9881608	+	1	NA	NA	NA	262	NR_024257	381347	Mm.441450	NR_024257		4930412O13Rik	ENSMUSG00000075535|Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.040000	0.636816	57(CCCCCTTAAAGA,-,0.00),58(CCCCTTAAAGAC,+,0.00)
mm_146314.1	chr18	80468801	80469001	+	1	NA	NA	NA	766	NM_026295	67655	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.035000	0.492537	
mm_154355.1	chrM	6056	6256	+	1	NA	NA	NA	NA	NA									0.015000	0.363184	-24(GGCTATATAGGA,-,0.00)
mm_173115.1	chrX	159988108	159988308	+	1	NA	NA	NA	-225	NM_001163085	270672	Mm.386889	NM_001163085	ENSMUSG00000031303	Map3k15	BC031147|MEKK15	mitogen-activated protein kinase kinase kinase 15	protein-coding	0.130000	0.781095	
mm_84135.1	chr9	59036779	59036979	-	1	NA	NA	NA	-438	NM_001042752	18007	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0.095000	0.651741	-31(CCCTATATAGAG,+,0.00),-31(CCCTATATAGAG,-,0.00),-29(CTATATAGAGGC,+,0.00)
mm_159975.1	chr6	113077344	113077544	+	1	NA	NA	NA	-195	NM_028385	72895	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0.120000	0.771144	
mm_150484.1	chr19	38950168	38950368	+	1	NA	NA	NA	19278	NM_008234	15201	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	0.010000	0.353234	
mm_40426.1	chr5	53532206	53532406	+	1	NA	NA	NA	-23473	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.025000	0.497512	
mm_64147.1	chr7	141263091	141263291	+	1	NA	NA	NA	3233	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.010000	0.507463	
mm_149884.1	chr19	25382194	25382394	+	1	NA	NA	NA	-123412	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.015000	0.482587	
mm_40305.1	chr5	43807908	43808108	+	1	NA	NA	NA	-10885	NM_009763	12182	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	0.070000	0.626866	
mm_12889.1	chr2	84773355	84773555	+	1	NA	NA	NA	1974	NM_009776	12258	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.005000	0.552239	
mm_122597.1	chr14	50930786	50930986	-	1	NA	NA	NA	-37	NM_001310507	219024	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161	transmembrane protein 55b	protein-coding	0.135000	0.716418	
mm_71863.1	chr8	69088639	69088839	+	1	NA	NA	NA	3	NM_007509	11966	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0.140000	0.736318	
mm_71437.1	chr8	46511307	46511507	+	1	NA	NA	NA	20441	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.035000	0.552239	
mm_149375.1	chr19	11375446	11375646	+	1	NA	NA	NA	58	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.010000	0.447761	
mm_156193.1	chrX	134059167	134059367	+	1	NA	NA	NA	91	NM_133196	108062	Mm.67938	NM_133196	ENSMUSG00000031256	Cstf2	C630034J23Rik|Cstf64|mir-3112	cleavage stimulation factor, 3' pre-RNA subunit 2	protein-coding	0.140000	0.771144	
mm_81389.1	chr9	108982915	108983115	+	1	NA	NA	NA	-3148	NM_145077	171530	Mm.388865	NM_145077	ENSMUSG00000049699	Ucn2	Ucn II|Ucn-2|ucn-II	urocortin 2	protein-coding	0.005000	0.517413	
mm_131500.1	chr16	17405940	17406140	+	1	NA	NA	NA	40	NM_023348	67474	Mm.271992	NM_023348	ENSMUSG00000022765	Snap29	1300018G05Rik|AI891940|AU020222|BB131856|Gs32	synaptosomal-associated protein 29	protein-coding	0.095000	0.691542	
mm_159988.1	chr6	115238887	115239087	+	1	NA	NA	NA	-7	NM_001326560	20965	Mm.441431	NM_013681	ENSMUSG00000009394	Syn2	2900074L19Rik|AI836018|AI841723	synapsin II	protein-coding	0.000000	0.512438	
mm_158791.1	chrX	167210219	167210419	-	1	NA	NA	NA	-1101	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.005000	0.492537	
mm_154039.1	chr19	53599909	53600109	-	1	NA	NA	NA	-387	NM_007790	13006	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.085000	0.597015	-35(CCGCTTAAAAAG,-,0.00),-33(GCTTAAAAAGGA,+,0.00)
mm_115834.1	chr13	21286950	21287150	-	1	NA	NA	NA	5636	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.005000	0.412935	
mm_170242.1	chr17	91647653	91647853	-	1	NA	NA	NA	-554951	NM_020252	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.020000	0.472637	
mm_129732.1	chr15	82047496	82047696	-	1	NA	NA	NA	2	NM_011482	20826	Mm.299312	NM_011482	ENSMUSG00000063480	Nhp2l1	FA-1|Fta1|Snu13|Ssfa1	NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	protein-coding	0.110000	0.606965	
mm_148273.1	chr18	81927380	81927580	-	1	NA	NA	NA	64600	NR_039589	100628596		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.045000	0.562189	
mm_52886.1	chr6	122553708	122553908	+	1	NA	NA	NA	-1	NM_009645	11628	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.015000	0.537313	
mm_113801.1	chr13	46429528	46429728	+	1	NA	NA	NA	11328	NM_001081425	666794	Mm.38269	NM_001081425	ENSMUSG00000038132	Rbm24	6330546B05Rik|AI606861	RNA binding motif protein 24	protein-coding	0.010000	0.407960	4(TTTTTTATAGTA,+,0.00)
mm_136274.1	chr16	91061470	91061670	-	1	NA	NA	NA	7575	NM_001163695	74387	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.005000	0.432836	
mm_55058.1	chr6	49047802	49048002	-	1	NA	NA	NA	11384	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.025000	0.497512	
mm_116789.1	chr13	53377264	53377464	-	1	NA	NA	NA	-3	NM_009269	268656	Mm.240336	NM_009269	ENSMUSG00000021468	Sptlc1	AW552086|C77762|E030036H05|Lcb1	serine palmitoyltransferase, long chain base subunit 1	protein-coding	0.110000	0.696517	
mm_172926.1	chr9	71114521	71114721	-	1	NA	NA	NA	48012	NM_001271843	64008	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.015000	0.492537	
mm_84474.1	chr9	66795395	66795595	-	1	NA	NA	NA	-72	NM_177583	208117	Mm.41291	NM_177583	ENSMUSG00000032375	Aph1b	2310057K14Rik|Aph1c	aph1 homolog B, gamma secretase subunit	protein-coding	0.090000	0.706468	
mm_41834.1	chr5	104302356	104302556	+	1	NA	NA	NA	3169	NM_008318	15891	Mm.4987	NM_008318	ENSMUSG00000029306	Ibsp	BSP|BSP II|BSPII|Bsp2	integrin binding sialoprotein	protein-coding	0.020000	0.417910	-8(TTCTTTATAAGC,-,0.00)
mm_23993.1	chr3	86539643	86539843	+	1	NA	NA	NA	8540	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.015000	0.477612	50(CTGTATAAAAGA,-,0.00)
mm_30255.1	chr3	146648205	146648405	-	1	NA	NA	NA	3012	NM_029144	75015	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.020000	0.492537	
mm_64710.1	chr7	4628429	4628629	-	1	NA	NA	NA	1953	NM_023440	68255	Mm.389784	NM_023440	ENSMUSG00000045282	Tmem86b	C330014O21Rik	transmembrane protein 86B	protein-coding	0.015000	0.547264	
mm_20243.1	chr2	126491474	126491674	-	1	NA	NA	NA	-21	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	0.010000	0.472637	
mm_142095.1	chr17	35834596	35834796	-	1	NA	NA	NA	3605	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.010000	0.417910	20(GTATATATAGCC,+,0.00)
mm_89901.1	chr10	111160382	111160582	+	1	NA	NA	NA	-4320	NM_001003717	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.000000	0.422886	-27(ACCTTTATAAAC,-,0.00),-25(CTTTATAAACTG,+,0.00)
mm_122222.1	chr14	32464612	32464812	-	1	NA	NA	NA	138	NM_021712	20508	Mm.190503	NM_021712	ENSMUSG00000100241	Slc18a3	VAChT|VAT	solute carrier family 18 (vesicular monoamine), member 3	protein-coding	0.115000	0.731343	
mm_169517.1	chr14	87441620	87441820	-	1	NA	NA	NA	25137	NM_001253755	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0.020000	0.422886	47(TGCTCTAAAAAC,-,0.00)
mm_4658.1	chr1	180357108	180357308	+	1	NA	NA	NA	-26659	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.035000	0.457711	-66(GTTTTTAAATCC,+,0.00)
mm_141610.1	chr17	32809809	32810009	-	1	NA	NA	NA	22	NM_001267583	240063	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	0.015000	0.477612	
mm_128213.1	chr15	36164746	36164946	-	1	NA	NA	NA	38	NM_001081253	78803	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	0.115000	0.741294	
mm_61719.1	chr7	81765834	81766034	+	1	NA	NA	NA	2981	NM_025997	67148	Mm.241472	NM_025997	ENSMUSG00000038646	Fam103a1	2410047I02Rik|2610204K14Rik|RAM	family with sequence similarity 103, member A1	protein-coding	0.000000	0.417910	
mm_17862.1	chr2	34825982	34826182	-	1	NA	NA	NA	153	NM_001164770	30050	Mm.4465	NM_013890	ENSMUSG00000035949	Fbxw2	2700071L08Rik|FBW2|Fwd2|MD6	F-box and WD-40 domain protein 2	protein-coding	0.135000	0.726368	
mm_116566.1	chr13	47010949	47011149	-	1	NA	NA	NA	3801	NM_175340	105193	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	0.080000	0.666667	
mm_101373.1	chr11	23770737	23770937	-	1	NA	NA	NA	133	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.045000	0.656716	
mm_161178.1	chr13	42301227	42301427	+	1	NA	NA	NA	-149	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.025000	0.487562	
mm_129259.1	chr15	76723687	76723887	-	1	NA	NA	NA	58	NM_145472	223665	Mm.291713	NM_145472	ENSMUSG00000033707	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	0.080000	0.631841	
mm_12799.1	chr2	79651913	79652113	+	1	NA	NA	NA	16588	NM_080558	70599	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0.005000	0.333333	
mm_24000.1	chr3	86845741	86845941	+	1	NA	NA	NA	75043	NM_001195496	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.005000	0.432836	
mm_69139.1	chr7	127050231	127050431	-	1	NA	NA	NA	1646	NM_026918	69036	Mm.21835	NM_026918	ENSMUSG00000049350	Zg16	1810010M01Rik|AI593689|ZG16p	zymogen granule protein 16	protein-coding	0.015000	0.512438	
mm_67292.1	chr7	78847131	78847331	-	1	NA	NA	NA	-20	NM_029585	76375	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	0.120000	0.726368	
mm_20652.1	chr2	132094090	132094290	-	1	NA	NA	NA	50918	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.025000	0.567164	
mm_105616.1	chr11	106788546	106788746	-	1	NA	NA	NA	-152	NM_007840	13207	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0.115000	0.701493	
mm_50335.1	chr6	48478605	48478805	+	1	NA	NA	NA	-25634	NR_015597	58894	Mm.31983	NR_015597	ENSMUSG00000107476	Zfp862-ps	4732460K03Rik|AI448302|Zfp862|mKIAA0543	zinc finger protein 862, pseudogene	pseudo	0.010000	0.597015	
mm_123860.1	chr14	72538855	72539055	-	1	NA	NA	NA	171048	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.005000	0.343284	
mm_117757.1	chr13	96010938	96011138	-	1	NA	NA	NA	-119116	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.015000	0.482587	
mm_104475.1	chr11	95514468	95514668	-	1	NA	NA	NA	-3	NM_130858	104079	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	0.135000	0.761194	
mm_138166.1	chr17	34264163	34264363	+	1	NA	NA	NA	1036	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.020000	0.477612	
mm_127019.1	chr15	96185653	96185853	+	1	NA	NA	NA	2953	NR_028311	100043335	Mm.247464	NR_028311		Gm4371	EG667874|Gm8854	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	0.005000	0.447761	
mm_79931.1	chr9	65659567	65659767	+	1	NA	NA	NA	-16881	NM_010952	18247	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0.005000	0.487562	
mm_65545.1	chr7	27130255	27130455	-	1	NA	NA	NA	10400	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.025000	0.522388	
mm_114633.1	chr13	76384042	76384242	+	1	NA	NA	NA	-819	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.075000	0.666667	
mm_121685.1	chr14	13778367	13778567	-	1	NA	NA	NA	107591	NM_177624	218739	Mm.39919	NM_177624	ENSMUSG00000044772	Sntn	A430083B19Rik	sentan, cilia apical structure protein	protein-coding	0.015000	0.507463	
mm_162489.1	chr1	135847639	135847839	+	1	NA	NA	NA	6878	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.015000	0.572139	
mm_41671.1	chr5	99611692	99611892	+	1	NA	NA	NA	117268	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.010000	0.482587	
mm_69189.1	chr7	127273419	127273619	-	1	NA	NA	NA	540	NM_009266	20768	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0.040000	0.621891	
mm_5378.1	chr1	30949217	30949417	-	1	NA	NA	NA	393	NR_002688	433406	Mm.389003	NR_002688		Gm13363	OTTMUSG00000011595	predicted gene 13363	pseudo	0.165000	0.781095	
mm_76831.1	chr8	104708171	104708371	-	1	NA	NA	NA	-25732	NM_001190330	102022	Mm.212983	NM_133960	ENSMUSG00000055730	Ces2a	9130231C15Rik|AI266984|Ces6	carboxylesterase 2A	protein-coding	0.005000	0.442786	
mm_164794.1	chr18	18232174	18232374	+	1	NA	NA	NA	-651284	NR_045374	75162	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.040000	0.457711	47(TGCCATTAAAGC,-,0.00)
mm_99886.1	chr11	109452640	109452840	+	1	NA	NA	NA	12662	NR_040680	100503496	Mm.265874	NR_040680		LOC100503496	-	uncharacterized LOC100503496	ncRNA	0.015000	0.338308	
mm_105071.1	chr11	100752806	100753006	-	1	NA	NA	NA	6872	NM_001081194	380728	Mm.297539	NM_001081194	ENSMUSG00000035355	Kcnh4	BEC2	potassium voltage-gated channel, subfamily H (eag-related), member 4	protein-coding	0.015000	0.522388	
mm_27288.1	chr3	41565427	41565627	-	1	NA	NA	NA	647	NM_001130186	269424	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.155000	0.766169	
mm_145951.1	chr18	67464791	67464991	+	1	NA	NA	NA	42	NM_144867	225655	Mm.221420	NM_144867	ENSMUSG00000024530	Slmo1	A230074A19Rik|BC019561|Prelid3a	slowmo homolog 1 (Drosophila)	protein-coding	0.140000	0.731343	
mm_88850.1	chr10	80930256	80930456	+	1	NA	NA	NA	265	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.055000	0.587065	
mm_95874.1	chr11	58059137	58059337	+	1	NA	NA	NA	-44916	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.015000	0.621891	
mm_63370.1	chr7	127091363	127091563	+	1	NA	NA	NA	27	NM_178901	101602	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	0.035000	0.577114	
mm_18619.1	chr2	68471960	68472160	-	1	NA	NA	NA	-79	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.190000	0.840796	
mm_61094.1	chr7	51861921	51862121	+	1	NA	NA	NA	6	NM_001330608	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.215000	0.830846	
mm_30153.1	chr3	142619078	142619278	-	1	NA	NA	NA	-1485	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.010000	0.358209	
mm_138033.1	chr17	33919524	33919724	+	1	NA	NA	NA	146	NM_009318	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.050000	0.567164	
mm_27748.1	chr3	69289853	69290053	-	1	NA	NA	NA	-26965	NM_178726	242083	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	0.045000	0.497512	
mm_155516.1	chrX	74254603	74254803	+	1	NA	NA	NA	16	NM_007927	13726	Mm.18892	NM_007927	ENSMUSG00000001964	Emd	AW550900|Sta	emerin	protein-coding	0.085000	0.611940	
mm_72100.1	chr8	71592135	71592335	+	1	NA	NA	NA	51	NM_001294269	66171	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	0.135000	0.756219	
mm_50384.1	chr6	48690552	48690752	+	1	NA	NA	NA	6074	NM_174990	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.015000	0.492537	
mm_72569.1	chr8	84127448	84127648	+	1	NA	NA	NA	1559	NM_001013384	244550	Mm.334654	NM_001013384	ENSMUSG00000012889	Podnl1	5832418A03Rik|Gm506	podocan-like 1	protein-coding	0.000000	0.557214	
mm_15770.1	chr2	164332668	164332868	+	1	NA	NA	NA	3	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.015000	0.512438	
mm_106378.1	chr11	118426416	118426616	-	1	NA	NA	NA	-1941	NM_001204129	56745	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.005000	0.557214	
mm_167393.1	chr8	95062419	95062619	+	1	NA	NA	NA	7416	NM_001042715	330830	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.005000	0.512438	
mm_164039.1	chr14	87159894	87160094	+	1	NA	NA	NA	-18880	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding	0.005000	0.527363	
mm_151342.1	chr19	55895370	55895570	+	1	NA	NA	NA	149	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.075000	0.631841	
mm_110458.1	chr12	51691920	51692120	-	1	NA	NA	NA	-106	NM_052973	94186	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.105000	0.726368	
mm_71192.1	chr8	40874308	40874508	+	1	NA	NA	NA	12041	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.005000	0.502488	
mm_143884.1	chr17	84313545	84313745	-	1	NA	NA	NA	-125698	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.025000	0.467662	
mm_108721.1	chr12	87163724	87163924	+	1	NA	NA	NA	-8339	NR_136901	625237	Mm.390529	NR_136901		Gm6566	EG625237	predicted gene 6566	ncRNA	0.015000	0.547264	
mm_58218.1	chr6	144209279	144209479	-	1	NA	NA	NA	189	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.015000	0.457711	
mm_124856.1	chr15	9533513	9533713	+	1	NA	NA	NA	-3737	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.015000	0.422886	
mm_145472.1	chr18	60303732	60303932	+	1	NA	NA	NA	10452	NM_001101475	240328	Mm.329461	NM_001101475	ENSMUSG00000090942	F830016B08Rik	Ifgga4	RIKEN cDNA F830016B08 gene	protein-coding	0.005000	0.338308	
mm_113513.1	chr13	37778387	37778587	+	1	NA	NA	NA	-47551	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.065000	0.666667	
mm_115072.1	chr13	101655025	101655225	+	1	NA	NA	NA	37505	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.015000	0.462687	
mm_87212.1	chr10	39794827	39795027	+	1	NA	NA	NA	62767	NM_011264	19714	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	0.015000	0.363184	
mm_146080.1	chr18	70621585	70621785	+	1	NA	NA	NA	53393	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.005000	0.422886	
mm_92684.1	chr10	80622502	80622702	-	1	NA	NA	NA	-178	NM_134002	103236	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.130000	0.626866	
mm_80331.1	chr9	75037715	75037915	+	1	NA	NA	NA	83	NM_021548	59046	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	0.120000	0.736318	
mm_79200.1	chr9	48495807	48496007	+	1	NA	NA	NA	564	NM_001004191	434402	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	0.055000	0.517413	
mm_28318.1	chr3	89279540	89279740	-	1	NA	NA	NA	5	NM_010107	13636	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0.095000	0.681592	
mm_85682.1	chr9	107872665	107872865	-	1	NA	NA	NA	54	NM_011251	19654	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	0.135000	0.731343	
mm_161409.1	chr15	5243910	5244110	-	1	NA	NA	NA	177	NM_001136079	19219	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.090000	0.716418	
mm_100444.1	chr11	119489152	119489352	+	1	NA	NA	NA	-2095	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.000000	0.417910	
mm_25247.1	chr3	103968545	103968745	+	1	NA	NA	NA	-329	NR_030676	100125931	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	0.120000	0.781095	
mm_152131.1	chr19	7019343	7019543	-	1	NA	NA	NA	26	NM_153795	108101	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.015000	0.552239	
mm_78080.1	chr9	15730748	15730948	+	1	NA	NA	NA	21079	NM_172289	234967	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.005000	0.512438	
mm_153991.1	chr19	50030659	50030859	-	1	NA	NA	NA	647887	NM_001252501	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.030000	0.492537	
mm_114474.1	chr13	68270935	68271135	+	1	NA	NA	NA	311069	NM_001308475	210009	Mm.205514	NM_172480	ENSMUSG00000034617	Mtrr	4732420G08|MSR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding	0.025000	0.497512	
mm_51601.1	chr6	84008645	84008845	+	1	NA	NA	NA	147	NM_001077694	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.050000	0.606965	
mm_99858.1	chr11	109364985	109365185	+	1	NA	NA	NA	-1431	NR_038097	100036768	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	OTTMUSG00000003456	predicted gene 11696	ncRNA	0.030000	0.522388	
mm_161595.1	chr16	36184027	36184227	+	1	NA	NA	NA	-85	NM_001082547	433016	Mm.235340	NM_001082547	ENSMUSG00000079597	Gm5483	EG433016	predicted gene 5483	protein-coding	0.000000	0.427861	54(CCTTTAAAACCC,+,0.00)
mm_5987.1	chr1	58445082	58445282	-	1	NA	NA	NA	31	NM_022988	65102	Mm.340248	NM_022988	ENSMUSG00000026036	Nif3l1	1110030G24Rik	Ngg1 interacting factor 3-like 1 (S. pombe)	protein-coding	0.070000	0.626866	
mm_120378.1	chr14	64588029	64588229	+	1	NA	NA	NA	14	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA	0.025000	0.457711	
mm_167039.1	chr7	79261454	79261654	+	1	NA	NA	NA	-11712	NM_018811	54608	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.005000	0.407960	-35(GGTTATATAAAG,-,0.00)
mm_99163.1	chr11	100623991	100624191	+	1	NA	NA	NA	1136	NM_028024	71966	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0.010000	0.527363	
mm_84610.1	chr9	70217289	70217489	-	1	NA	NA	NA	10039	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.025000	0.487562	
mm_173083.1	chrX	142298233	142298433	+	1	NA	NA	NA	828	NR_002883	434858	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.020000	0.497512	
mm_146632.1	chr18	10182103	10182303	-	1	NA	NA	NA	-411	NM_009071	19877	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.130000	0.711443	
mm_87269.1	chr10	41746654	41746854	+	1	NA	NA	NA	62909	NM_001243075	103268	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	0.010000	0.492537	
mm_150160.1	chr19	32295762	32295962	+	1	NA	NA	NA	53454	NM_001168525	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.015000	0.412935	-34(GTGTATAAAAGG,-,0.00)
mm_95035.1	chr11	32205346	32205546	+	1	NA	NA	NA	31	NM_030093	78372	Mm.29952	NM_030093	ENSMUSG00000040767	Snrnp25	3300001G02Rik|AL033324|C16ORF33	small nuclear ribonucleoprotein 25 (U11/U12)	protein-coding	0.065000	0.582090	
mm_85533.1	chr9	106544586	106544786	-	1	NA	NA	NA	16939	NM_026645	68265	Mm.141451	NM_026645	ENSMUSG00000023577	Iqcf3	1700012F17Rik|AV040440	IQ motif containing F3	protein-coding	0.010000	0.542289	
mm_13744.1	chr2	118119905	118120105	+	1	NA	NA	NA	8129	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.025000	0.507463	
mm_158310.1	chrX	126593022	126593222	-	1	NA	NA	NA	240882	NM_177705	237029	Mm.60998	NM_177705	ENSMUSG00000058670	4932411N23Rik	-	RIKEN cDNA 4932411N23 gene	protein-coding	0.025000	0.492537	
mm_103027.1	chr11	69735190	69735390	-	1	NA	NA	NA	23343	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.010000	0.542289	
mm_64918.1	chr7	16244074	16244274	-	1	NA	NA	NA	-20	NM_176912	319430	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	0.020000	0.592040	
mm_21748.1	chr2	164805099	164805299	-	1	NA	NA	NA	85	NM_178375	67538	Mm.33184	NM_178375	ENSMUSG00000045822	Zswim3	4921517A06Rik|C86566	zinc finger SWIM-type containing 3	protein-coding	0.045000	0.626866	
mm_149358.1	chr19	11047516	11047716	+	1	NA	NA	NA	2950	NR_102366	107350	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.005000	0.402985	
mm_73729.1	chr8	113635525	113635725	+	1	NA	NA	NA	39	NM_001048143	270096	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	0.095000	0.651741	
mm_113464.1	chr13	36117779	36117979	+	1	NA	NA	NA	236	NM_001039189	69955	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.100000	0.661692	
mm_138234.1	chr17	34398756	34398956	+	1	NA	NA	NA	36	NM_001163855	407788	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	0.055000	0.587065	
mm_129738.1	chr15	82212600	82212800	-	1	NA	NA	NA	115	NM_001207021	435145	Mm.41289	NM_001207021	ENSMUSG00000096883	Shisa8	Orf26|ckamp39	shisa family member 8	protein-coding	0.135000	0.751244	
mm_71512.1	chr8	46846333	46846533	+	1	NA	NA	NA	106688	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.030000	0.557214	
mm_148061.1	chr18	72202496	72202696	-	1	NA	NA	NA	148473	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.000000	0.318408	
mm_6207.1	chr1	66815841	66816041	-	1	NA	NA	NA	1654	NM_177645	68691	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.025000	0.422886	57(CCCTTTAGAGCT,+,0.00)
mm_120434.1	chr14	65805907	65806107	+	1	NA	NA	NA	96	NM_023209	52033	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	0.075000	0.601990	
mm_145862.1	chr18	65458069	65458269	+	1	NA	NA	NA	27172	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.437811	
mm_51084.1	chr6	67019627	67019827	+	1	NA	NA	NA	-16872	NR_040278	320172	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0.000000	0.318408	
mm_56676.1	chr6	113719359	113719559	-	1	NA	NA	NA	-5	NM_001286404	58991	Mm.379095	NM_021488	ENSMUSG00000064177	Ghrl	2210006E23Rik|Ghr|MTLRP|MTLRPAP|m46	ghrelin	protein-coding	0.000000	0.517413	
mm_140931.1	chr17	24350959	24351159	-	1	NA	NA	NA	-964	NM_013855	27410	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	0.105000	0.706468	
mm_64445.1	chr7	142653899	142654099	+	1	NA	NA	NA	997	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.050000	0.601990	
mm_112961.1	chr13	21180325	21180525	+	1	NA	NA	NA	494	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.150000	0.781095	
mm_106828.1	chr12	7996415	7996615	+	1	NA	NA	NA	18838	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.020000	0.452736	
mm_28875.1	chr3	97735432	97735632	-	1	NA	NA	NA	32482	NR_110360	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.000000	0.437811	
mm_79105.1	chr9	46268510	46268710	+	1	NA	NA	NA	2	NM_080434	66113	Mm.29738	NM_080434	ENSMUSG00000032079	Apoa5	1300007O05Rik|Apoav|RAP3	apolipoprotein A-V	protein-coding	0.015000	0.532338	
mm_22305.1	chr2	180381120	180381320	-	1	NA	NA	NA	-4384	NR_045331	622283	Mm.447602	NR_045331		Mir1a-1hg	EG622283|Gm6307	Mir1a-1 and Mir133a-2 host gene	ncRNA	0.005000	0.552239	
mm_154019.1	chr19	53313201	53313401	-	1	NA	NA	NA	2795	NM_001008542	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.075000	0.641791	
mm_6061.1	chr1	60517056	60517256	-	1	NA	NA	NA	49609	NM_001045513	77300	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0.005000	0.353234	
mm_102695.1	chr11	65788197	65788397	-	1	NA	NA	NA	62	NM_009157	26398	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	0.155000	0.771144	
mm_54459.1	chr6	34873435	34873635	-	1	NA	NA	NA	4530	NM_199145	78412	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.010000	0.482587	-27(GACCCTAAAAAG,-,0.00),-25(CCCTAAAAAGCC,+,0.00)
mm_75100.1	chr8	34111632	34111832	-	1	NA	NA	NA	-3020	NM_011722	22428	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.025000	0.472637	
mm_81624.1	chr9	110834578	110834778	+	1	NA	NA	NA	90	NM_153172	260408	Mm.79114	NM_153172	ENSMUSG00000047257	Prss45	Tespl|Tessp5	protease, serine 45	protein-coding	0.060000	0.577114	
mm_27097.1	chr3	30220329	30220529	-	1	NA	NA	NA	-207225	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.005000	0.343284	
mm_132461.1	chr16	36183989	36184189	+	1	NA	NA	NA	-123	NM_001082547	433016	Mm.235340	NM_001082547	ENSMUSG00000079597	Gm5483	EG433016	predicted gene 5483	protein-coding	0.005000	0.432836	
mm_137428.1	chr17	26270269	26270469	+	1	NA	NA	NA	17459	NR_037905	66978	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	0.030000	0.422886	
mm_161535.1	chr15	102524492	102524692	-	1	NA	NA	NA	29	NM_018787	54615	Mm.445915	NM_018787	ENSMUSG00000023052	Npff	-	neuropeptide FF-amide peptide precursor	protein-coding	0.010000	0.587065	
mm_154658.1	chrX	7841933	7842133	+	1	NA	NA	NA	-49	NM_001290537	54644	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	0.105000	0.636816	
mm_30680.1	chr4	11191321	11191521	+	1	NA	NA	NA	70	NM_001037134	12448	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	0.065000	0.681592	
mm_37511.1	chr4	123896498	123896698	-	1	NA	NA	NA	-8415	NM_019660	56309	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	0.065000	0.616915	
mm_105752.1	chr11	109472943	109473143	-	1	NA	NA	NA	186	NM_134038	104681	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.050000	0.592040	25(CGGTTTATAAGA,-,0.00)
mm_62796.1	chr7	112741975	112742175	+	1	NA	NA	NA	-17309	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.025000	0.547264	
mm_160376.1	chr8	40822922	40823122	+	1	NA	NA	NA	13	NM_001025380	546055	Mm.334503	NM_001025380	ENSMUSG00000054033	Adam39	1700056P18Rik	a disintegrin and metallopeptidase domain 39	protein-coding	0.000000	0.383085	-53(CCCTATAAGAGA,-,0.00)
mm_145874.1	chr18	65472584	65472784	+	1	NA	NA	NA	41687	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.373134	
mm_166658.1	chr6	87791356	87791556	-	1	NA	NA	NA	13320	NM_018762	54368	Mm.12897	NM_018762	ENSMUSG00000030054	Gp9	Cd42|GPIX	glycoprotein 9 (platelet)	protein-coding	0.015000	0.562189	
mm_36407.1	chr4	78003485	78003685	-	1	NA	NA	NA	208310	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.398010	
mm_16524.1	chr2	181520448	181520648	+	1	NA	NA	NA	63	NM_001271584	13002	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0.110000	0.696517	
mm_129737.1	chr15	82166829	82167029	-	1	NA	NA	NA	19660	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.030000	0.532338	
mm_140428.1	chr17	88064691	88064891	+	1	NA	NA	NA	494	NM_001081034	225055	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.120000	0.766169	
mm_144344.1	chr18	15150321	15150521	+	1	NA	NA	NA	1025	NM_134112	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.085000	0.646766	-90(CCCTTTAAGAGA,-,0.00),-89(CCTTTAAGAGAA,+,0.00)
mm_142237.1	chr17	37481114	37481314	-	1	NA	NA	NA	2315	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.005000	0.482587	
mm_120138.1	chr14	60377489	60377689	+	1	NA	NA	NA	-697	NM_028113	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.015000	0.497512	
mm_136948.1	chr17	14546251	14546451	+	1	NA	NA	NA	-147409	NR_027986	74917	Mm.32228	NM_183107		4930474M22Rik	-	RIKEN cDNA 4930474M22 gene	ncRNA	0.020000	0.517413	
mm_134478.1	chr16	18621510	18621710	-	1	NA	NA	NA	793	NM_001001999	14724	Mm.475622	NM_010327	ENSMUSG00000050761	Gp1bb	-	glycoprotein Ib, beta polypeptide	protein-coding	0.065000	0.611940	
mm_134155.1	chr16	10788559	10788759	-	1	NA	NA	NA	-4	NM_013694	21959	Mm.206798	NM_013694	ENSMUSG00000043050	Tnp2	TP2|Tp-2	transition protein 2	protein-coding	0.015000	0.597015	
mm_47669.1	chr5	127617249	127617449	-	1	NA	NA	NA	43	NM_133895	100561	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.150000	0.721393	
mm_35785.1	chr4	46468675	46468875	-	1	NA	NA	NA	17849	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.010000	0.547264	
mm_168231.1	chr10	80676123	80676323	-	1	NA	NA	NA	70	NM_021462	17347	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.180000	0.805970	
mm_94860.1	chr11	24077668	24077868	+	1	NA	NA	NA	-288	NM_016707	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.085000	0.746269	
mm_143015.1	chr17	56476313	56476513	-	1	NA	NA	NA	67	NM_001252455	19280	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.155000	0.805970	
mm_11691.1	chr2	35663544	35663744	+	1	NA	NA	NA	-28350	NM_001001602	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.005000	0.477612	
mm_52385.1	chr6	113237792	113237992	+	1	NA	NA	NA	49	NM_026849	97287	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	0.090000	0.686567	
mm_11515.1	chr2	32587195	32587395	+	1	NA	NA	NA	217	NM_011373	20448	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0.065000	0.626866	
mm_103741.1	chr11	80081092	80081292	-	1	NA	NA	NA	-201	NM_018776	54394	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.035000	0.547264	
mm_34534.1	chr4	149485135	149485335	+	1	NA	NA	NA	-93	NM_133435	66454	Mm.76062	NM_133435	ENSMUSG00000028992	Nmnat1	2610529L11Rik|5730441G13Rik|D4Cole1e|nmnat	nicotinamide nucleotide adenylyltransferase 1	protein-coding	0.100000	0.706468	
mm_25669.1	chr3	121953092	121953292	+	1	NA	NA	NA	-134	NM_172525	214137	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.125000	0.766169	
mm_44622.1	chr5	25705675	25705875	-	1	NA	NA	NA	22	NM_020570	57434	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	0.110000	0.631841	
mm_26792.1	chr3	9786422	9786622	-	1	NA	NA	NA	47157	NM_053182	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.000000	0.432836	73(TTTTTTATAAGG,-,0.00)
mm_124441.1	chr14	118706355	118706555	-	1	NA	NA	NA	-236	NM_001033336	239273	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.115000	0.691542	
mm_50010.1	chr6	41059344	41059544	+	1	NA	NA	NA	-23935	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.472637	
mm_172785.1	chr9	100969471	100969671	-	1	NA	NA	NA	65313	NM_001311149	66904	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0.005000	0.517413	
mm_66122.1	chr7	31053038	31053238	-	1	NA	NA	NA	-1684	NM_022007	57780	Mm.41770	NM_022007	ENSMUSG00000036578	Fxyd7	1110035I01Rik	FXYD domain-containing ion transport regulator 7	protein-coding	0.040000	0.646766	
mm_94673.1	chr11	17324879	17325079	+	1	NA	NA	NA	67291	NM_001330649	57316	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.005000	0.402985	51(CTGTTTAAAGGG,-,0.00)
mm_45258.1	chr5	63939469	63939669	-	1	NA	NA	NA	29328	NM_145923	100532	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0.005000	0.383085	
mm_63358.1	chr7	127016565	127016765	+	1	NA	NA	NA	687	NM_030240	67278	Mm.345385	NM_030240	ENSMUSG00000030680	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0.070000	0.666667	
mm_32723.1	chr4	116507504	116507704	+	1	NA	NA	NA	55	NM_008389	16351	Mm.1350	NM_008389	ENSMUSG00000028696	Ipp	D4Jhu8|Mipp	IAP promoted placental gene	protein-coding	0.110000	0.676617	
mm_11332.1	chr2	30445541	30445741	+	1	NA	NA	NA	28558	NM_030244	72500	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.005000	0.572139	
mm_64112.1	chr7	141078032	141078232	+	1	NA	NA	NA	-97	NM_001162924	56460	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0.055000	0.616915	
mm_66714.1	chr7	46030238	46030438	-	1	NA	NA	NA	-52	NM_018795	27421	Mm.63514	NM_018795	ENSMUSG00000030834	Abcc6	Abcc1b|DCC|Dyscalc1|Mrp6|dyscalc	ATP-binding cassette, sub-family C (CFTR/MRP), member 6	protein-coding	0.035000	0.631841	
mm_75476.1	chr8	48555163	48555363	-	1	NA	NA	NA	119427	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.140000	0.736318	
mm_2248.1	chr1	91057793	91057993	+	1	NA	NA	NA	4449	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.025000	0.502488	
mm_105628.1	chr11	106913529	106913729	-	1	NA	NA	NA	7086	NM_025481	66313	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	0.000000	0.333333	
mm_170213.1	chr17	72479506	72479706	+	1	NA	NA	NA	124701	NM_007439	11682	Mm.311854	NM_007439	ENSMUSG00000055471	Alk	CD246|Tcrz	anaplastic lymphoma kinase	protein-coding	0.025000	0.497512	-28(CTTTAAATACCC,+,0.00)
mm_134487.1	chr16	18629700	18629900	-	1	NA	NA	NA	138	NM_213614	18951	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.140000	0.766169	
mm_73532.1	chr8	108703378	108703578	+	1	NA	NA	NA	-11166	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.010000	0.472637	
mm_169892.1	chr16	48283628	48283828	+	1	NA	NA	NA	-7	NM_028610	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding	0.015000	0.462687	
mm_96510.1	chr11	68459429	68459629	+	1	NA	NA	NA	27404	NM_177320	320207	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik	phosphoinositide-3-kinase, regulatory subunit 5, p101	protein-coding	0.005000	0.383085	
mm_166316.1	chr5	110330597	110330797	+	1	NA	NA	NA	12338	NM_153400	231602	Mm.55948	NM_153400	ENSMUSG00000029503	P2rx2	P2X2a|P2x2	purinergic receptor P2X, ligand-gated ion channel, 2	protein-coding	0.005000	0.447761	-58(GTGCTTAAAAAC,-,0.00),-56(GCTTAAAAACAG,+,0.00)
mm_87382.1	chr10	44686148	44686348	+	1	NA	NA	NA	-227500	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.015000	0.527363	
mm_649.1	chr1	40428205	40428405	+	1	NA	NA	NA	-1265	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.010000	0.457711	
mm_64197.1	chr7	141467422	141467622	+	1	NA	NA	NA	160	NM_001111049	12476	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0.050000	0.611940	
mm_50296.1	chr6	47468253	47468453	+	1	NA	NA	NA	14029	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.000000	0.388060	
mm_64268.1	chr7	141753275	141753475	+	1	NA	NA	NA	-35636	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.025000	0.547264	
mm_16203.1	chr2	173033408	173033608	+	1	NA	NA	NA	11606	NM_019547	56190	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.015000	0.606965	
mm_23889.1	chr3	83031269	83031469	+	1	NA	NA	NA	5216	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.020000	0.542289	
mm_87431.1	chr10	50902994	50903194	+	1	NA	NA	NA	7443	NM_011376	20464	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded homolog 1 (Drosophila)	protein-coding	0.045000	0.537313	-34(TTCTATTAAAGA,-,0.00)
mm_97163.1	chr11	75487042	75487242	+	1	NA	NA	NA	365	NM_138659	192159	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	0.085000	0.621891	
mm_171954.1	chr5	78473773	78473973	+	1	NA	NA	NA	1008385	NR_131050	69370	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0.020000	0.492537	
mm_146344.1	chr18	82537030	82537230	+	1	NA	NA	NA	-17333	NM_001025256	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.010000	0.462687	
mm_2067.1	chr1	87620268	87620468	+	1	NA	NA	NA	56	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.015000	0.557214	
mm_53393.1	chr6	129587962	129588162	+	1	NA	NA	NA	-3749	NM_010654	16643	Mm.391515	NM_010654	ENSMUSG00000030165	Klrd1	CD94	killer cell lectin-like receptor, subfamily D, member 1	protein-coding	0.005000	0.452736	
mm_36700.1	chr4	96664037	96664237	-	1	NA	NA	NA	-18	NM_010007	13109	Mm.12838	NM_010007	ENSMUSG00000052520	Cyp2j5	-	cytochrome P450, family 2, subfamily j, polypeptide 5	protein-coding	0.010000	0.467662	
mm_30865.1	chr4	31964021	31964221	+	1	NA	NA	NA	14	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.150000	0.766169	
mm_59315.1	chr7	25289401	25289601	+	1	NA	NA	NA	7322	NM_027882	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.010000	0.601990	
mm_153477.1	chr19	41273777	41273977	-	1	NA	NA	NA	-9873	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.000000	0.457711	
mm_78026.1	chr9	13765877	13766077	+	1	NA	NA	NA	16796	NR_024025	77116	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.010000	0.398010	
mm_68159.1	chr7	102687175	102687375	-	1	NA	NA	NA	52	NM_198012	101700	Mm.39043	NM_198012	ENSMUSG00000073968	Trim68	AI894158|F730114J12Rik|Rnf137|SS-56	tripartite motif-containing 68	protein-coding	0.110000	0.691542	
mm_12292.1	chr2	69035931	69036131	+	1	NA	NA	NA	-99769	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.000000	0.298507	
mm_93379.1	chr10	105568154	105568354	-	1	NA	NA	NA	6225	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.015000	0.393035	
mm_139475.1	chr17	55986444	55986644	+	1	NA	NA	NA	33	NM_183178	240121	Mm.270660	NM_183178	ENSMUSG00000011589	Fsd1	-	fibronectin type 3 and SPRY domain-containing protein	protein-coding	0.085000	0.641791	
mm_81596.1	chr9	110529137	110529337	+	1	NA	NA	NA	-3360	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.025000	0.522388	
mm_17496.1	chr2	28621848	28622048	-	1	NA	NA	NA	34	NM_008114	14582	Mm.373385	NM_008114	ENSMUSG00000026815	Gfi1b	Gfi-1B	growth factor independent 1B	protein-coding	0.045000	0.542289	
mm_77560.1	chr8	123427462	123427662	-	1	NA	NA	NA	-15394	NM_001253784	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.055000	0.601990	
mm_48884.1	chr5	151190087	151190287	-	1	NA	NA	NA	6	NM_001163493	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.030000	0.537313	
mm_51612.1	chr6	85076082	85076282	+	1	NA	NA	NA	41	NR_002702	108176	Mm.431982	NR_002702		Npm3-ps1	-	nucleoplasmin 3, pseudogene 1	pseudo	0.050000	0.577114	
mm_23201.1	chr3	41496117	41496317	+	1	NA	NA	NA	-3018	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.005000	0.457711	
mm_152096.1	chr19	6909562	6909762	-	1	NA	NA	NA	-17	NM_012021	54683	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.095000	0.701493	
mm_116228.1	chr13	33039938	33040138	-	1	NA	NA	NA	12624	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	0.005000	0.507463	74(GCCTTTATGGAG,+,0.00)
mm_26613.1	chr3	152348472	152348672	+	1	NA	NA	NA	2094	NM_001076676	170822	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	0.010000	0.373134	-54(GCGTTTTAAAAG,-,0.00),-53(CGTTTTAAAAGC,-,0.00),-52(GTTTTAAAAGCT,+,0.00)
mm_85172.1	chr9	96478565	96478765	-	1	NA	NA	NA	10	NM_011279	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.145000	0.736318	
mm_77052.1	chr8	109577420	109577620	-	1	NA	NA	NA	1652	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.000000	0.557214	
mm_58407.1	chr7	3249763	3249963	+	1	NA	NA	NA	-123	NM_001033431	378425	Mm.277152	NM_001033431	ENSMUSG00000078817	Nlrp12	Nalp12|PYPAF7	NLR family, pyrin domain containing 12	protein-coding	0.025000	0.507463	
mm_159597.1	chr4	126753449	126753649	+	1	NA	NA	NA	-6	NM_001035525	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.085000	0.676617	
mm_159206.1	chr2	121413480	121413680	-	1	NA	NA	NA	212	NM_153075	212670	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	0.085000	0.646766	
mm_55630.1	chr6	72314613	72314813	-	1	NA	NA	NA	10103	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.005000	0.388060	
mm_2022.1	chr1	87128088	87128288	+	1	NA	NA	NA	3180	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.010000	0.557214	
mm_136893.1	chr17	13013092	13013292	+	1	NA	NA	NA	5353	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.005000	0.457711	
mm_171328.1	chr3	98339795	98339995	-	1	NA	NA	NA	74	NM_016966	236539	Mm.16898	NM_016966	ENSMUSG00000053398	Phgdh	3-PGDH|3PGDH|4930479N23|A10|PGAD|PGD|PGDH|SERA	3-phosphoglycerate dehydrogenase	protein-coding	0.035000	0.552239	
mm_144333.1	chr18	13508291	13508491	+	1	NA	NA	NA	464342	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.010000	0.422886	
mm_150490.1	chr19	39007064	39007264	+	1	NA	NA	NA	145	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.000000	0.442786	
mm_100440.1	chr11	119486279	119486479	+	1	NA	NA	NA	-4968	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.005000	0.417910	
mm_81584.1	chr9	110422494	110422694	+	1	NA	NA	NA	2786	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.005000	0.522388	
mm_137992.1	chr17	33637726	33637926	+	1	NA	NA	NA	-230	NM_001002842	378460	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	0.005000	0.467662	-65(CTCTTTAGAGAC,+,0.00)
mm_86608.1	chr10	13964537	13964737	+	1	NA	NA	NA	-1742	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.090000	0.666667	
mm_73583.1	chr8	109860172	109860372	+	1	NA	NA	NA	-8331	NM_001122594	244650	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0.005000	0.497512	
mm_59142.1	chr7	24270334	24270534	+	1	NA	NA	NA	16	NM_009567	22755	Mm.383535	NM_009567	ENSMUSG00000055305	Zfp93	Znf235	zinc finger protein 93	protein-coding	0.045000	0.572139	
mm_42402.1	chr5	114968732	114968932	+	1	NA	NA	NA	2230	NM_009327	21405	Mm.332607	NM_009327	ENSMUSG00000029556	Hnf1a	AI323641|HNF1|HNF1-alpha|HNF1[a]|Hnf-1|Hnf1alpha|LFB1|Tcf-1|Tcf1	HNF1 homeobox A	protein-coding	0.020000	0.567164	
mm_87674.1	chr10	59016268	59016468	+	1	NA	NA	NA	203009	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding	0.010000	0.388060	
mm_114692.1	chr13	81783446	81783646	+	1	NA	NA	NA	254	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.115000	0.691542	
mm_25484.1	chr3	109123086	109123286	+	1	NA	NA	NA	37	NM_172685	229731	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	0.120000	0.756219	
mm_140761.1	chr17	17608111	17608311	-	1	NA	NA	NA	16278	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.010000	0.363184	
mm_47780.1	chr5	131964628	131964828	-	1	NA	NA	NA	84459	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.010000	0.393035	
mm_29835.1	chr3	129804031	129804231	-	1	NA	NA	NA	-101	NM_001287224	242235	Mm.302549	NM_001205102	ENSMUSG00000093865	Lrit3	Gm421	leucine-rich repeat, immunoglobulin-like and transmembrane domains 3	protein-coding	0.025000	0.522388	
mm_126994.1	chr15	94629153	94629353	+	1	NA	NA	NA	68	NM_178789	320709	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0.195000	0.796020	-39(GTATTTATAGCC,+,0.00)
mm_31766.1	chr4	63544655	63544855	+	1	NA	NA	NA	-10	NM_024173	66290	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0.105000	0.731343	
mm_153071.1	chr19	32242175	32242375	-	1	NA	NA	NA	-31262	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.005000	0.517413	
mm_170087.1	chr17	35598587	35598787	-	1	NA	NA	NA	27950	NM_001244654	672682	Mm.454025	NM_001244654	ENSMUSG00000090588	Gm9573	Muc21	predicted gene 9573	protein-coding	0.030000	0.512438	
mm_93907.1	chr10	126978450	126978650	-	1	NA	NA	NA	-167	NM_001113470	52468	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0.080000	0.661692	74(ACTTAAAAAGGC,+,0.00)
mm_125459.1	chr15	52295427	52295627	+	1	NA	NA	NA	-26	NM_172816	239436	Mm.208831	NM_172816	ENSMUSG00000022315	Slc30a8	C820002P14Rik|ZnT-8|ZnT8	solute carrier family 30 (zinc transporter), member 8	protein-coding	0.035000	0.487562	
mm_24344.1	chr3	89799259	89799459	+	1	NA	NA	NA	25750	NM_027315	70093	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0.005000	0.532338	-33(CACTATAAGAGG,-,0.00)
mm_122403.1	chr14	41004361	41004561	-	1	NA	NA	NA	2459	NM_001316739	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.040000	0.597015	
mm_111580.1	chr12	101818971	101819171	-	1	NA	NA	NA	48	NM_011812	23876	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	0.060000	0.616915	
mm_88599.1	chr10	79793487	79793687	+	1	NA	NA	NA	15	NM_001161747	18483	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0.175000	0.796020	
mm_52933.1	chr6	122933760	122933960	+	1	NA	NA	NA	12012	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.015000	0.442786	
mm_75567.1	chr8	60503129	60503329	-	1	NA	NA	NA	-2895	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.005000	0.343284	33(GAATTTTAAAGG,-,0.00)
mm_59128.1	chr7	19965293	19965493	+	1	NA	NA	NA	-19	NM_027839	71601	Mm.98097	NM_027839	ENSMUSG00000070777	Ceacam20	9130012D09Rik	carcinoembryonic antigen-related cell adhesion molecule 20	protein-coding	0.005000	0.592040	
mm_96175.1	chr11	61617773	61617973	+	1	NA	NA	NA	-35448	NM_027817	71520	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.015000	0.432836	
mm_18161.1	chr2	45098778	45098978	-	1	NA	NA	NA	11399	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.005000	0.398010	31(CCCCATAAATGA,-,0.00),46(CCATTTAAACAA,+,0.00)
mm_6792.1	chr1	84144446	84144646	-	1	NA	NA	NA	74415	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.318408	-36(TTTTTAAAAGAC,+,0.00),51(GCATATATATGG,-,0.00)
mm_37185.1	chr4	117289345	117289545	-	1	NA	NA	NA	10	NM_001310730	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.120000	0.756219	
mm_3563.1	chr1	150430534	150430734	+	1	NA	NA	NA	35531	NM_021400	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.005000	0.462687	
mm_153293.1	chr19	37413781	37413981	-	1	NA	NA	NA	-20960	NM_008245	15242	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0.030000	0.572139	
mm_61688.1	chr7	81023751	81023951	+	1	NA	NA	NA	30167	NM_178707	233410	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	8430405N24|A730014M16Rik|Znf592|mKIAA0211	zinc finger protein 592	protein-coding	0.005000	0.497512	62(GCCTTTAGAGAG,+,0.00)
mm_45966.1	chr5	90468424	90468624	-	1	NA	NA	NA	7654	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.462687	
mm_11891.1	chr2	49744480	49744680	+	1	NA	NA	NA	-43106	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.010000	0.587065	
mm_85476.1	chr9	105827993	105828193	-	1	NA	NA	NA	-8	NM_001102607	245026	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0.050000	0.681592	
mm_77382.1	chr8	120042665	120042865	-	1	NA	NA	NA	50327	NM_001310635	78892	Mm.264680	NM_030209	ENSMUSG00000031825	Crispld2	1810049K24Rik|Lcrisp2|Lgl1|coffeecrisp	cysteine-rich secretory protein LCCL domain containing 2	protein-coding	0.010000	0.492537	
mm_116271.1	chr13	34652812	34653012	-	1	NA	NA	NA	-11	NR_105041	101056149	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	OTTMUSG00000027716	predicted gene 15908	ncRNA	0.090000	0.676617	
mm_44603.1	chr5	25100541	25100741	-	1	NA	NA	NA	1	NM_145401	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.060000	0.597015	
mm_147275.1	chr18	39185008	39185208	-	1	NA	NA	NA	191963	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.025000	0.507463	
mm_35207.1	chr4	19569957	19570157	-	1	NA	NA	NA	47	NM_027769	70568	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	0.100000	0.696517	
mm_15826.1	chr2	164643764	164643964	+	1	NA	NA	NA	-5062	NM_001012723	277345	Mm.247244	NM_001012723	ENSMUSG00000070530	Wfdc16	BC043944|WAP16	WAP four-disulfide core domain 16	protein-coding	0.015000	0.507463	
mm_142876.1	chr17	51824697	51824897	-	1	NA	NA	NA	1791	NM_001163631	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.025000	0.412935	76(GCATTTAAAAAC,-,0.00)
mm_155485.1	chrX	73681573	73681773	+	1	NA	NA	NA	8540	NM_001142809	102857	Mm.274553	NM_133987	ENSMUSG00000019558	Slc6a8	AA589632|CRT|CRTR|CT1|CTR5|Creat	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	protein-coding	0.005000	0.477612	
mm_39507.1	chr5	21218320	21218520	+	1	NA	NA	NA	32153	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.000000	0.427861	
mm_102232.1	chr11	54918567	54918767	-	1	NA	NA	NA	15813	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.015000	0.567164	
mm_63128.1	chr7	123001543	123001743	+	1	NA	NA	NA	31079	NM_175023	19647	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6	protein-coding	0.045000	0.572139	
mm_150586.1	chr19	40660558	40660758	+	1	NA	NA	NA	888	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.035000	0.517413	
mm_37859.1	chr4	132273657	132273857	-	1	NA	NA	NA	-618	NM_025579	66464	Mm.331926	NM_025579	ENSMUSG00000028899	Taf12	20kDa|2810422D08Rik|AW557038|Taf2J	TATA-box binding protein associated factor 12	protein-coding	0.020000	0.398010	
mm_168981.1	chr12	92094980	92095180	-	1	NA	NA	NA	-245923	NM_011344	20338	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0.010000	0.427861	
mm_30513.1	chr3	158036539	158036739	-	1	NA	NA	NA	0	NM_001093752	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.100000	0.646766	
mm_32059.1	chr4	97777495	97777695	+	1	NA	NA	NA	-31	NM_001122953	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.165000	0.855721	
mm_11184.1	chr2	28898698	28898898	+	1	NA	NA	NA	17623	NM_019446	54422	Mm.21390	NM_019446	ENSMUSG00000026805	Barhl1	Dres115|MBH2	BarH-like 1 (Drosophila)	protein-coding	0.010000	0.417910	
mm_78048.1	chr9	14662974	14663174	+	1	NA	NA	NA	-48074	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.025000	0.552239	-85(GAGTTTAAAAAG,-,0.00),-83(GTTTAAAAAGAG,+,0.00)
mm_159365.1	chr3	88333919	88334119	-	1	NA	NA	NA	414	NM_024246	71913	Mm.34256	NM_024246	ENSMUSG00000001420	Tmem79	2310042N02Rik|2310074C17Rik|Matt|ma	transmembrane protein 79	protein-coding	0.010000	0.547264	
mm_94221.1	chr11	3202607	3202807	+	1	NA	NA	NA	124	NM_023743	74203	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0.150000	0.835821	
mm_65505.1	chr7	25736858	25737058	-	1	NA	NA	NA	17743	NM_178089	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.000000	0.412935	
mm_107385.1	chr12	33147696	33147896	+	1	NA	NA	NA	110	NM_028139	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.085000	0.587065	
mm_70894.1	chr8	25601372	25601572	+	1	NA	NA	NA	-129	NM_001308481	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.060000	0.616915	
mm_166567.1	chr6	48988094	48988294	+	1	NA	NA	NA	1333	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.015000	0.587065	
mm_49364.1	chr6	22999586	22999786	+	1	NA	NA	NA	124184	NM_001081306	19283	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding	0.030000	0.472637	-98(CCTTAAATACGG,+,0.00)
mm_127238.1	chr15	99578957	99579157	+	1	NA	NA	NA	1	NM_009699	11827	Mm.20206	NM_009699	ENSMUSG00000023013	Aqp2	AQP-CD|WCH-CD|cph|jpk	aquaporin 2	protein-coding	0.035000	0.631841	-34(GGCCCTATAAGT,-,0.00)
mm_13772.1	chr2	118663220	118663420	+	1	NA	NA	NA	-257	NM_001033254	214230	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 protein (Cdc42/Rac)-activated kinase 6	protein-coding	0.070000	0.631841	
mm_11201.1	chr2	29125222	29125422	+	1	NA	NA	NA	330	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.145000	0.726368	
mm_68952.1	chr7	126564419	126564619	-	1	NA	NA	NA	1847	NM_146200	56347	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.025000	0.477612	
mm_92127.1	chr10	64090085	64090285	-	1	NA	NA	NA	70	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.065000	0.597015	
mm_82470.1	chr9	16310262	16310462	-	1	NA	NA	NA	67869	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.010000	0.482587	
mm_97520.1	chr11	78500026	78500226	+	1	NA	NA	NA	1006	NM_011707	22370	Mm.3667	NM_011707	ENSMUSG00000017344	Vtn	AI256434|Vn	vitronectin	protein-coding	0.025000	0.557214	
mm_63687.1	chr7	130574831	130575031	+	1	NA	NA	NA	-2553	NM_001004468	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.015000	0.572139	
mm_143026.1	chr17	56584438	56584638	-	1	NA	NA	NA	45	NM_001029979	224902	Mm.214973	NM_001029979	ENSMUSG00000042625	Safb2	AA389433|AI255170|mKIAA0138	scaffold attachment factor B2	protein-coding	0.105000	0.651741	
mm_165878.1	chr4	41138317	41138517	+	1	NA	NA	NA	2396	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.005000	0.447761	
mm_6253.1	chr1	68966608	68966808	-	1	NA	NA	NA	141351	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	0.000000	0.298507	
mm_37796.1	chr4	130520096	130520296	-	1	NA	NA	NA	53840	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.050000	0.577114	
mm_2136.1	chr1	88070709	88070909	+	1	NA	NA	NA	30	NM_201644	394434	Mm.300095	NM_201644	ENSMUSG00000090175	Ugt1a9	UDPGT|UDPGT 1-9|UGT1-09|UGT1.9|UGTP4|Ugt1a12|mUGTBr/P	UDP glucuronosyltransferase 1 family, polypeptide A9	protein-coding	0.000000	0.487562	
mm_145222.1	chr18	50056890	50057090	+	1	NA	NA	NA	3708	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.005000	0.422886	
mm_133709.1	chr16	93368323	93368523	+	1	NA	NA	NA	-1297	NR_030429	791074		NR_030429	ENSMUSG00000076457	Mir802	Mirn802|mir-802|mmu-mir-802	microRNA 802	ncRNA	0.015000	0.527363	
mm_170851.1	chr2	177897058	177897258	+	1	NA	NA	NA	-5	NR_038101	665205	Mm.440737	NR_038101		Gm14327	OTTMUSG00000016328	predicted gene 14327	pseudo	0.010000	0.492537	
mm_115485.1	chr13	3610191	3610391	-	1	NA	NA	NA	817	NM_134063	105203	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	0.055000	0.562189	
mm_59950.1	chr7	30425705	30425905	+	1	NA	NA	NA	2501	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.045000	0.631841	
mm_145050.1	chr18	40256849	40257049	+	1	NA	NA	NA	-13	NR_045177	73001	Mm.428647	NR_045177	ENSMUSG00000071860	2900055J20Rik	-	RIKEN cDNA 2900055J20 gene	ncRNA	0.065000	0.592040	
mm_105621.1	chr11	106789024	106789224	-	1	NA	NA	NA	-128	NM_177088	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.100000	0.661692	
mm_108567.1	chr12	84773228	84773428	+	1	NA	NA	NA	58	NM_028863	74316	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0.060000	0.616915	
mm_124879.1	chr15	10223904	10224104	+	1	NA	NA	NA	98	NM_001253781	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.005000	0.522388	
mm_128082.1	chr15	27681426	27681626	-	1	NA	NA	NA	16	NM_001242424	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.145000	0.736318	
mm_12975.1	chr2	90775315	90775515	+	1	NA	NA	NA	-7329	NM_178755	271813	Mm.61146	NM_178755	ENSMUSG00000040812	Agbl2	4930524K04|A430081C19Rik|CCP2	ATP/GTP binding protein-like 2	protein-coding	0.005000	0.378109	
mm_120919.1	chr14	76415262	76415462	+	1	NA	NA	NA	401	NM_001310646	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.180000	0.830846	
mm_35889.1	chr4	49544794	49544994	-	1	NA	NA	NA	4652	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.015000	0.477612	
mm_14050.1	chr2	122375608	122375808	+	1	NA	NA	NA	-6790	NM_001013829	435684	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0.065000	0.582090	
mm_91838.1	chr10	57517144	57517344	-	1	NA	NA	NA	15285	NM_019760	56442	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	0.015000	0.442786	
mm_116102.1	chr13	28885204	28885404	-	1	NA	NA	NA	118	NR_045054	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.055000	0.572139	
mm_102642.1	chr11	62648477	62648677	-	1	NA	NA	NA	-54	NM_198861	192976	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	0.195000	0.870647	
mm_136167.1	chr16	88563057	88563257	-	1	NA	NA	NA	26	NM_018778	54420	Mm.25836	NM_018778	ENSMUSG00000050520	Cldn8	AI648025	claudin 8	protein-coding	0.015000	0.552239	
mm_133684.1	chr16	92498016	92498216	+	1	NA	NA	NA	-31	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	0.015000	0.557214	
mm_37322.1	chr4	119404708	119404908	-	1	NA	NA	NA	10713	NM_001270435	73332	Mm.425204	NM_028506	ENSMUSG00000028637	Ccdc30	1700001O02Rik|1700041C02Rik|1700111D19Rik|4930445I03Rik	coiled-coil domain containing 30	protein-coding	0.010000	0.442786	
mm_26716.1	chr3	158036611	158036811	+	1	NA	NA	NA	29	NM_001289524	67144	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	0.075000	0.631841	
mm_116117.1	chr13	28950246	28950446	-	1	NA	NA	NA	3336	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.030000	0.368159	-65(CTCTTTAAAAGG,-,0.00),-64(TCTTTAAAAGGA,+,0.00)
mm_64388.1	chr7	142481284	142481484	+	1	NA	NA	NA	4371	NM_001271523	16985	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.010000	0.547264	
mm_130366.1	chr15	97791361	97791561	-	1	NA	NA	NA	7096	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.015000	0.592040	
mm_162531.1	chr1	164949827	164950027	+	1	NA	NA	NA	-14417	NM_008510	16963	Mm.190	NM_008510	ENSMUSG00000026573	Xcl1	AI661682|ATAC|LTN|Lptn|SCM-1|SCM-1a|Scyc1	chemokine (C motif) ligand 1	protein-coding	0.010000	0.348259	
mm_59432.1	chr7	27129746	27129946	+	1	NA	NA	NA	9891	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.040000	0.557214	
mm_2625.1	chr1	120621630	120621830	+	1	NA	NA	NA	19243	NM_010133	13798	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1|engrailed-1	engrailed 1	protein-coding	0.010000	0.437811	
mm_9174.1	chr1	171051743	171051943	-	1	NA	NA	NA	7560	NM_010188	14131	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	0.015000	0.477612	-55(CTGTATTAATGG,-,0.00)
mm_19200.1	chr2	84474495	84474695	-	1	NA	NA	NA	-421	NM_011576	21788	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0.010000	0.487562	
mm_13715.1	chr2	117179273	117179473	+	1	NA	NA	NA	-5754	NR_030440	732489		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.000000	0.333333	-98(TTTTTTAAAGTG,+,0.00),-85(TACTATTAAAAC,-,0.00)
mm_171738.1	chr4	95194502	95194702	+	1	NA	NA	NA	-142380	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.000000	0.447761	
mm_143102.1	chr17	57081617	57081817	-	1	NA	NA	NA	-3207	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.060000	0.611940	
mm_151170.1	chr19	53251167	53251367	+	1	NA	NA	NA	3938	NR_036590	69319	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.025000	0.507463	
mm_89162.1	chr10	86124327	86124527	+	1	NA	NA	NA	28573	NR_038024	78170	Mm.444790	NR_038024		4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0.005000	0.447761	
mm_129068.1	chr15	75664020	75664220	-	1	NA	NA	NA	14670	NM_028404	72960	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	0.035000	0.542289	
mm_173210.1	chrX	73026537	73026737	+	1	NA	NA	NA	10466	NM_001100461	385377	Mm.327861	NM_001100461	ENSMUSG00000050424	Pnma5	mKIAA1934	paraneoplastic antigen family 5	protein-coding	0.010000	0.447761	-32(CACTTTTTAAGG,-,0.00),-30(CTTTTTAAGGCA,+,0.00)
mm_147756.1	chr18	61224233	61224433	-	1	NA	NA	NA	3834	NM_146086	225600	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	0.010000	0.472637	
mm_140880.1	chr17	23828937	23829137	-	1	NA	NA	NA	72	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.160000	0.786070	
mm_24463.1	chr3	90654016	90654216	+	1	NA	NA	NA	-186	NM_199422	381493	Mm.291525	NM_199422	ENSMUSG00000063767	S100a7a	AY465109|Gm1020|S100A7L1|S100A7f|S100a15|S100a15a|S100a17l1	S100 calcium binding protein A7A	protein-coding	0.010000	0.507463	
mm_126774.1	chr15	86168389	86168589	+	1	NA	NA	NA	17652	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.015000	0.482587	-52(CTCTCTTAAAAG,-,0.00)
mm_130466.1	chr15	98609818	98610018	-	1	NA	NA	NA	-2285	NM_007405	11512	Mm.157091	NM_007405	ENSMUSG00000022994	Adcy6	AC6|mKIAA0422	adenylate cyclase 6	protein-coding	0.075000	0.651741	
mm_25027.1	chr3	98146365	98146565	+	1	NA	NA	NA	-14169	NM_027665	71078	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.050000	0.577114	
mm_146974.1	chr18	33463936	33464136	-	1	NA	NA	NA	-7	NM_001109988	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.125000	0.756219	
mm_66013.1	chr7	30592848	30593048	-	1	NA	NA	NA	-6	NM_021397	58206	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	0.010000	0.557214	
mm_56094.1	chr6	87379382	87379582	-	1	NA	NA	NA	6117	NM_025467	66284	Mm.46446	NM_025467	ENSMUSG00000030049	Gkn2	1810036H07Rik|Bricd1b	gastrokine 2	protein-coding	0.010000	0.303483	
mm_80824.1	chr9	96782376	96782576	+	1	NA	NA	NA	16914	NR_102296	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	0.015000	0.502488	
mm_35163.1	chr4	14544123	14544323	-	1	NA	NA	NA	77555	NM_145947	208890	Mm.483839	NM_145947	ENSMUSG00000040569	Slc26a7	-	solute carrier family 26, member 7	protein-coding	0.040000	0.527363	
mm_138250.1	chr17	34589980	34590180	+	1	NA	NA	NA	274	NM_134116	106512	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.020000	0.621891	
mm_82928.1	chr9	35119101	35119301	-	1	NA	NA	NA	-2391	NM_009178	20443	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0.015000	0.572139	
mm_11325.1	chr2	30416104	30416304	+	1	NA	NA	NA	154	NM_138748	110854	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.090000	0.651741	
mm_19378.1	chr2	91194960	91195160	-	1	NA	NA	NA	-25	NM_013839	22259	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0.040000	0.601990	
mm_124208.1	chr14	99090062	99090262	-	1	NA	NA	NA	-9262	NM_029320	52023	Mm.22835	NM_029320	ENSMUSG00000022064	Pibf1	-	progesterone immunomodulatory binding factor 1	protein-coding	0.000000	0.313433	
mm_157991.1	chrX	94537253	94537453	-	1	NA	NA	NA	4721	NM_019791	94275	Mm.27578	NM_019791	ENSMUSG00000025151	Maged1	2810433C11Rik|5430405L04Rik|DXBwg1492e|Dlixin|Dlxin-1|Dlxin1|MAGE-D1|NRAGE|mFLJ00163	melanoma antigen, family D, 1	protein-coding	0.010000	0.393035	
mm_26850.1	chr3	14770127	14770327	-	1	NA	NA	NA	8233	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.000000	0.303483	
mm_66979.1	chr7	63937598	63937798	-	1	NA	NA	NA	1217	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.130000	0.776119	
mm_126301.1	chr15	79358347	79358547	+	1	NA	NA	NA	10045	NM_001304832	17133	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.020000	0.542289	
mm_129881.1	chr15	83464484	83464684	-	1	NA	NA	NA	22	NM_001159509	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.140000	0.766169	
mm_132096.1	chr16	31297289	31297489	+	1	NA	NA	NA	17419	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.030000	0.442786	
mm_130032.1	chr15	88977752	88977952	-	1	NA	NA	NA	701	NM_133241	170790	Mm.32780	NM_133241	ENSMUSG00000035805	Mlc1	AW048630|BB074274|Kiaa0027-hp|LVM|MLC|VL|WKL1|mKIAA0027	megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	protein-coding	0.025000	0.597015	
mm_80838.1	chr9	97179058	97179258	+	1	NA	NA	NA	-68117	NM_138756	192287	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.025000	0.467662	
mm_50894.1	chr6	56857636	56857836	+	1	NA	NA	NA	25677	NM_012056	27055	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	0.000000	0.333333	
mm_40655.1	chr5	65131034	65131234	+	1	NA	NA	NA	-97	NM_175174	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.030000	0.487562	
mm_161713.1	chr17	25222621	25222821	+	1	NA	NA	NA	139	NM_028789	74154	Mm.267353	NM_028789	ENSMUSG00000015127	Unkl	1300004G08Rik	unkempt family like zinc finger	protein-coding	0.065000	0.626866	
mm_165186.1	chr2	29889911	29890111	+	1	NA	NA	NA	-52	NM_013615	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.145000	0.771144	
mm_123130.1	chr14	56262080	56262280	-	1	NA	NA	NA	154	NM_013542	14939	Mm.14874	NM_013542	ENSMUSG00000015437	Gzmb	AI553453|CCP-1/C11|CCP1|Ctla-1|Ctla1|GZB	granzyme B	protein-coding	0.015000	0.537313	-94(CATCATAAAAGC,-,0.00)
mm_53001.1	chr6	123270217	123270417	+	1	NA	NA	NA	8210	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.015000	0.348259	
mm_40664.1	chr5	65348389	65348589	+	1	NA	NA	NA	78	NM_031180	83379	Mm.45274	NM_031180	ENSMUSG00000029195	Klb	AV071179|betaKlotho	klotho beta	protein-coding	0.040000	0.512438	
mm_45854.1	chr5	87784491	87784691	-	1	NA	NA	NA	10141	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.000000	0.343284	-36(GCTTTAAAAATC,+,0.00)
mm_10430.1	chr2	14073551	14073751	+	1	NA	NA	NA	283	NR_038162	70957	Mm.399049	NR_038162	ENSMUSG00000086657	Stamos	4921530L18Rik	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand	ncRNA	0.045000	0.572139	
mm_143527.1	chr17	73901718	73901918	-	1	NA	NA	NA	48378	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.000000	0.293532	
mm_75008.1	chr8	27296190	27296390	-	1	NA	NA	NA	245	NR_003107	732482	Mm.463248	NR_003107		Gm9731	-	Fam58a pseudogene	pseudo	0.030000	0.497512	
mm_88078.1	chr10	67979649	67979849	+	1	NA	NA	NA	151	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.090000	0.686567	
mm_28178.1	chr3	88000312	88000512	-	1	NA	NA	NA	-56	NM_001109758	12032	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0.085000	0.651741	
mm_36713.1	chr4	98022982	98023182	-	1	NA	NA	NA	245456	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.005000	0.467662	6(CCCCATATATGC,-,0.00)
mm_11807.1	chr2	43917170	43917370	+	1	NA	NA	NA	148054	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.000000	0.412935	
mm_5498.1	chr1	36985675	36985875	-	1	NA	NA	NA	-46248	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.030000	0.462687	
mm_9070.1	chr1	168323174	168323374	-	1	NA	NA	NA	108895	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.000000	0.313433	
mm_2434.1	chr1	96872178	96872378	+	1	NA	NA	NA	-107	NM_172658	227394	Mm.11662	NM_172658	ENSMUSG00000040693	Slco4c1	9530051F04|C330017E21Rik|OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20|oatp-R	solute carrier organic anion transporter family, member 4C1	protein-coding	0.070000	0.671642	
mm_91920.1	chr10	60299880	60300080	-	1	NA	NA	NA	15519	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.050000	0.611940	
mm_81619.1	chr9	110798069	110798269	+	1	NA	NA	NA	-16	NM_153099	235628	Mm.292285	NM_153099	ENSMUSG00000044664	Prss42	Tessp2	protease, serine 42	protein-coding	0.055000	0.656716	
mm_17537.1	chr2	29772128	29772328	-	1	NA	NA	NA	10700	NM_001177392	433416	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	OTTMUSG00000012686	predicted gene 13547	protein-coding	0.010000	0.462687	
mm_14742.1	chr2	144368940	144369140	+	1	NA	NA	NA	5	NM_181417	228714	Mm.227925	NM_181417	ENSMUSG00000027425	Csrp2bp	2510008M08Rik|ATAC2|AU023459|D2Ertd473e|D2Wsu131e|E430020F17|Kat14	cysteine and glycine-rich protein 2 binding protein	protein-coding	0.150000	0.746269	
mm_141478.1	chr17	31144180	31144380	-	1	NA	NA	NA	2	NM_009363	21785	Mm.1825	NM_009363	ENSMUSG00000024028	Tff2	SP|mSP	trefoil factor 2 (spasmolytic protein 1)	protein-coding	0.015000	0.587065	
mm_51459.1	chr6	82052223	82052423	+	1	NA	NA	NA	10695	NM_145570	232146	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	0.020000	0.512438	
mm_100830.1	chr11	5421464	5421664	-	1	NA	NA	NA	23283	NM_001080924	407821	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0.000000	0.348259	
mm_84462.1	chr9	66592722	66592922	-	1	NA	NA	NA	293	NM_144937	235441	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.105000	0.736318	
mm_41822.1	chr5	104046447	104046647	+	1	NA	NA	NA	-317	NM_028794	74167	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	0.055000	0.557214	
mm_40365.1	chr5	48400921	48401121	+	1	NA	NA	NA	5448	NR_045500	70592	Mm.437183	NR_045500	ENSMUSG00000029089	5730480H06Rik	-	RIKEN cDNA 5730480H06 gene	ncRNA	0.005000	0.407960	
mm_126031.1	chr15	76722831	76723031	+	1	NA	NA	NA	-758	NM_198119	378937	Mm.289666	NM_198119	ENSMUSG00000033707	Lrrc24	6430402H13Rik	leucine rich repeat containing 24	protein-coding	0.065000	0.597015	
mm_724.1	chr1	42952866	42953066	+	1	NA	NA	NA	94	NM_053107	93690	Mm.444976	NM_053107	ENSMUSG00000041907	Gpr45	9230112G11Rik|AW046772	G protein-coupled receptor 45	protein-coding	0.065000	0.716418	
mm_114609.1	chr13	75839923	75840123	+	1	NA	NA	NA	137	NM_053108	93692	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.010000	0.512438	
mm_30644.1	chr4	8837616	8837816	+	1	NA	NA	NA	147310	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.020000	0.522388	
mm_116548.1	chr13	45971209	45971409	-	1	NA	NA	NA	-6318	NM_009124	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.010000	0.502488	
mm_73378.1	chr8	105636501	105636701	+	1	NA	NA	NA	63	NM_181322	13018	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0.175000	0.776119	
mm_146366.1	chr18	82584456	82584656	+	1	NA	NA	NA	30048	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.030000	0.552239	32(CCCCCTAAAGAG,-,0.00)
mm_26858.1	chr3	14863964	14864164	-	1	NA	NA	NA	526	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.010000	0.422886	
mm_131729.1	chr16	21855018	21855218	+	1	NA	NA	NA	-36851	NM_172821	71751	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0.005000	0.472637	
mm_59107.1	chr7	19796826	19797026	+	1	NA	NA	NA	-117	NM_023224	80794	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0.020000	0.626866	
mm_82203.1	chr9	124101944	124102144	+	1	NA	NA	NA	-139	NM_009915	12772	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.005000	0.348259	
mm_21202.1	chr2	155552987	155553187	-	1	NA	NA	NA	3843	NR_040613	74945	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	0.000000	0.467662	
mm_72093.1	chr8	71580447	71580647	+	1	NA	NA	NA	11620	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.020000	0.562189	
mm_112886.1	chr13	20859588	20859788	+	1	NA	NA	NA	65575	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.020000	0.422886	
mm_78583.1	chr9	37348373	37348573	+	1	NA	NA	NA	-81	NM_001081429	245902	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	0.075000	0.592040	
mm_64187.1	chr7	141460837	141461037	+	1	NA	NA	NA	-157	NM_001025103	213573	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.020000	0.562189	
mm_4624.1	chr1	179546294	179546494	+	1	NA	NA	NA	-118	NM_001331054	15278	Mm.293529	NM_008249	ENSMUSG00000026492	Tfb2m	Hkp1	transcription factor B2, mitochondrial	protein-coding	0.105000	0.696517	
mm_131589.1	chr16	18776020	18776220	+	1	NA	NA	NA	-727	NM_013805	12741	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	0.020000	0.562189	
mm_164941.1	chr19	3570585	3570785	+	1	NA	NA	NA	5064	NM_001164159	52036	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.005000	0.398010	
mm_158157.1	chrX	103480631	103480831	-	1	NA	NA	NA	2502	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.005000	0.303483	
mm_124387.1	chr14	108914074	108914274	-	1	NA	NA	NA	65	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.025000	0.542289	
mm_158116.1	chrX	102250688	102250888	-	1	NA	NA	NA	-12	NM_001276474	12705	Mm.2390	NM_007709	ENSMUSG00000051159	Cited1	AI316840|AU019144|Msg1	Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1	protein-coding	0.140000	0.721393	
mm_155287.1	chrX	61183362	61183562	+	1	NA	NA	NA	2096	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.010000	0.388060	
mm_98551.1	chr11	95057009	95057209	+	1	NA	NA	NA	12089	NM_001306071	16400	Mm.57035	NM_013565	ENSMUSG00000001507	Itga3	AA407068|CD49C|GAPB3	integrin alpha 3	protein-coding	0.020000	0.597015	
mm_11379.1	chr2	31245751	31245951	+	1	NA	NA	NA	-72	NM_019681	14299	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.145000	0.756219	
mm_138153.1	chr17	34211883	34212083	+	1	NA	NA	NA	7504	NM_011530	21355	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.055000	0.616915	
mm_40182.1	chr5	36203940	36204140	+	1	NA	NA	NA	19	NM_175249	76943	Mm.44242	NM_175249	ENSMUSG00000043430	Psapl1	2310020A21Rik	prosaposin-like 1	protein-coding	0.015000	0.616915	
mm_36710.1	chr4	97584570	97584770	-	1	NA	NA	NA	-79	NR_015513	319865	Mm.373807	NM_177023		E130114P18Rik	-	RIKEN cDNA E130114P18 gene	ncRNA	0.030000	0.507463	
mm_45853.1	chr5	87781778	87781978	-	1	NA	NA	NA	7428	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.015000	0.452736	
mm_171637.1	chr4	23100848	23101048	-	1	NA	NA	NA	610400	NR_131335	105500046		NR_131335	ENSMUSG00000107859	Gm30731	Pnky|lnc-pou3f2	predicted gene, 30731	ncRNA	0.060000	0.646766	
mm_164549.1	chr17	13010165	13010365	+	1	NA	NA	NA	2426	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.005000	0.407960	-30(TCTTAAATACGG,+,0.00)
mm_168472.1	chr11	48753500	48753700	-	1	NA	NA	NA	-46760	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.030000	0.477612	
mm_59787.1	chr7	28895147	28895347	+	1	NA	NA	NA	13591	NM_001110807	60594	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	0.010000	0.597015	
mm_124470.1	chr14	121370399	121370599	-	1	NA	NA	NA	8731	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.000000	0.383085	54(ACCCTTTAAAGC,-,0.00),55(CCCTTTAAAGCT,+,0.00),56(CCTTTAAAGCTG,+,0.00)
mm_37553.1	chr4	126058322	126058522	-	1	NA	NA	NA	-143	NM_172701	230751	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	0.090000	0.587065	
mm_20107.1	chr2	121116343	121116543	-	1	NA	NA	NA	-6652	NM_001160424	640543	Mm.478785	NM_001160424	ENSMUSG00000079103	Tgm7	TGMZ|TGz	transglutaminase 7	protein-coding	0.015000	0.502488	
mm_100302.1	chr11	117849213	117849413	+	1	NA	NA	NA	76	NM_009689	11799	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0.115000	0.686567	
mm_61726.1	chr7	81859050	81859250	+	1	NA	NA	NA	149	NM_145375	107769	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.065000	0.661692	4(TCCCATTAAAGC,-,0.00)
mm_149730.1	chr19	21840158	21840358	+	1	NA	NA	NA	61918	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.000000	0.432836	
mm_156656.1	chrX	157702857	157703057	+	1	NA	NA	NA	3984	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.025000	0.427861	
mm_75611.1	chr8	62123050	62123250	-	1	NA	NA	NA	43	NM_001136089	26359	Mm.42179	NM_011922	ENSMUSG00000031635	Anxa10	-	annexin A10	protein-coding	0.000000	0.407960	
mm_151191.1	chr19	53529003	53529203	+	1	NA	NA	NA	-215	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.095000	0.671642	-32(GGCCTTATATGG,-,0.00),-30(CCTTATATGGGC,+,0.00)
mm_172604.1	chr8	15519874	15520074	+	1	NA	NA	NA	462321	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.080000	0.532338	39(AACTTTAAATGG,-,0.00)
mm_156651.1	chrX	157702709	157702909	+	1	NA	NA	NA	3836	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.025000	0.457711	
mm_58129.1	chr6	140613830	140614030	-	1	NA	NA	NA	-8733	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.005000	0.442786	-37(GGCCCTATAAGT,-,0.00)
mm_2296.1	chr1	91494510	91494710	+	1	NA	NA	NA	-58	NM_028718	74019	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	0.135000	0.751244	
mm_87225.1	chr10	40433795	40433995	+	1	NA	NA	NA	84587	NM_001291816	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.000000	0.412935	
mm_100456.1	chr11	119729485	119729685	+	1	NA	NA	NA	104780	NR_045313	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	0.010000	0.442786	-36(GGCCTTTAAGAG,-,0.00),-35(GCCTTTAAGAGA,-,0.00),-34(CCTTTAAGAGAA,+,0.00)
mm_82105.1	chr9	123067314	123067514	+	1	NA	NA	NA	32673	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.020000	0.527363	
mm_149305.1	chr19	10732220	10732420	+	1	NA	NA	NA	6654	NM_007650	12507	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	0.030000	0.552239	
mm_58421.1	chr7	3292998	3293198	+	1	NA	NA	NA	70	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.040000	0.621891	
mm_47514.1	chr5	124078978	124079178	-	1	NA	NA	NA	16720	NM_019875	56325	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.010000	0.547264	
mm_80165.1	chr9	71293555	71293755	+	1	NA	NA	NA	77866	NM_009022	19378	Mm.42016	NM_009022	ENSMUSG00000013584	Aldh1a2	AV116159|Aldh1a7|Raldh1|Raldh2	aldehyde dehydrogenase family 1, subfamily A2	protein-coding	0.020000	0.517413	
mm_44754.1	chr5	31295802	31296002	-	1	NA	NA	NA	-25	NM_022424	64339	Mm.292544	NM_022424	ENSMUSG00000038552	Fndc4	2810430J06Rik|6330410H20Rik|AB030187|AI838506|AW487863|FRCP1|Fnmp1	fibronectin type III domain containing 4	protein-coding	0.105000	0.751244	
mm_168346.1	chr11	121925202	121925402	-	1	NA	NA	NA	95084	NM_029049	74675	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.040000	0.547264	
mm_32204.1	chr4	101507667	101507867	+	1	NA	NA	NA	-209	NM_001164585	72685	Mm.76494	NM_198412	ENSMUSG00000028528	Dnajc6	2810027M23Rik|mKIAA0473	DnaJ heat shock protein family (Hsp40) member C6	protein-coding	0.020000	0.487562	
mm_108839.1	chr12	97124225	97124425	+	1	NA	NA	NA	-1077103	NR_103800	69423	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0.005000	0.353234	
mm_66900.1	chr7	59976460	59976660	-	1	NA	NA	NA	-2129	NR_015456	52480	Mm.482346	NR_015456	ENSMUSG00000100826	Snhg14	AU018661|D7Ertd715e|Lncat	small nucleolar RNA host gene 14	ncRNA	0.000000	0.338308	
mm_59110.1	chr7	19816486	19816686	+	1	NA	NA	NA	6169	NM_033601	12051	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.035000	0.661692	
mm_29277.1	chr3	107554974	107555174	-	1	NA	NA	NA	-1	NM_026261	67591	Mm.55982	NM_026261	ENSMUSG00000055891	Ubl4b	4930522D07Rik	ubiquitin-like 4B	protein-coding	0.000000	0.542289	
mm_46625.1	chr5	108434265	108434465	-	1	NA	NA	NA	13	NM_007507	11958	Mm.136093	NM_007507	ENSMUSG00000050856	Atp5k	2610008D24Rik|Atp5i|Lfm1	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	protein-coding	0.070000	0.592040	
mm_72308.1	chr8	77549319	77549519	+	1	NA	NA	NA	22	NM_001081240	102182	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	0.105000	0.691542	
mm_56897.1	chr6	119121173	119121373	-	1	NA	NA	NA	-12778	NM_001256002	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.005000	0.417910	
mm_5014.1	chr1	192841586	192841786	+	1	NA	NA	NA	-19	NR_040468	73455	Mm.414869	NR_040468		1700065J18Rik	-	RIKEN cDNA 1700065J18 gene	ncRNA	0.005000	0.492537	
mm_72366.1	chr8	80859297	80859497	+	1	NA	NA	NA	21082	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.020000	0.417910	
mm_133743.1	chr16	94010869	94011069	+	1	NA	NA	NA	-2132	NM_019500	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.020000	0.517413	
mm_49208.1	chr6	15720736	15720936	+	1	NA	NA	NA	175	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.095000	0.716418	
mm_84563.1	chr9	67832228	67832428	-	1	NA	NA	NA	2	NM_001163143	244911	Mm.325849	NM_001163143	ENSMUSG00000047990	C2cd4a	EG244911|Fam148a	C2 calcium-dependent domain containing 4A	protein-coding	0.050000	0.532338	-35(TCGTATAAAAGC,-,0.00)
mm_41923.1	chr5	105610870	105611070	+	1	NA	NA	NA	-88999	NM_001122768	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.010000	0.288557	
mm_83960.1	chr9	57131143	57131343	-	1	NA	NA	NA	47	NR_102289	76794	Mm.472839	NR_102289	ENSMUSG00000086728	Man2c1os	2410133F24Rik|AI851351	mannosidase, alpha, class 2C, member 1, opposite strand	ncRNA	0.070000	0.631841	
mm_49109.1	chr6	8363025	8363225	+	1	NA	NA	NA	103837	NM_001302353	100036521	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039|OTTMUSG00000029336	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0.005000	0.412935	-35(TCCTATAAAGGA,-,0.00),22(TGGCATATAAGG,-,0.00)
mm_96306.1	chr11	63158377	63158577	+	1	NA	NA	NA	25674	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.065000	0.547264	
mm_169214.1	chr13	66680711	66680911	-	1	NA	NA	NA	224539	NM_026219	67530	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	0.025000	0.532338	
mm_47263.1	chr5	121836693	121836893	-	1	NA	NA	NA	66	NM_001306128	16923	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.130000	0.756219	
mm_30230.1	chr3	145759490	145759690	-	1	NA	NA	NA	898	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.025000	0.601990	
mm_9176.1	chr1	171057876	171058076	-	1	NA	NA	NA	1427	NM_010188	14131	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	0.010000	0.507463	
mm_52562.1	chr6	116208091	116208291	+	1	NA	NA	NA	158	NM_026585	28006	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	0.085000	0.651741	
mm_114912.1	chr13	94976344	94976544	+	1	NA	NA	NA	100	NM_172590	218460	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.165000	0.776119	
mm_56701.1	chr6	114968913	114969113	-	1	NA	NA	NA	-47261	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.115000	0.726368	
mm_109821.1	chr12	3856068	3856268	-	1	NA	NA	NA	6076	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.005000	0.532338	
mm_147004.1	chr18	34373411	34373611	-	1	NA	NA	NA	-96	NM_007874	13476	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0.105000	0.741294	
mm_153311.1	chr19	38032815	38033015	-	1	NA	NA	NA	10662	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.005000	0.343284	
mm_129446.1	chr15	78549268	78549468	-	1	NA	NA	NA	-5023	NM_009218	20607	Mm.211411	NM_009218	ENSMUSG00000044933	Sstr3	Smstr-3|Smstr3|sst3	somatostatin receptor 3	protein-coding	0.010000	0.487562	
mm_39296.1	chr5	5481453	5481653	+	1	NA	NA	NA	-2410	NM_001200025	381716	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding	0.015000	0.412935	
mm_24827.1	chr3	95653802	95654002	+	1	NA	NA	NA	-4819	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.025000	0.457711	
mm_145771.1	chr18	65023813	65024013	+	1	NA	NA	NA	386	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.025000	0.532338	43(CCCTTTTAGAGG,-,0.00),44(CCTTTTAGAGGA,+,0.00)
mm_105393.1	chr11	103375866	103376066	-	1	NA	NA	NA	-12274	NM_001205236	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.005000	0.442786	
mm_28197.1	chr3	88177627	88177827	-	1	NA	NA	NA	58	NR_045997	76642	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.085000	0.646766	
mm_84033.1	chr9	57765448	57765648	-	1	NA	NA	NA	312	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.130000	0.701493	
mm_40115.1	chr5	34949267	34949467	+	1	NA	NA	NA	-81	NM_173402	71729	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.080000	0.776119	
mm_121760.1	chr14	19653266	19653466	-	1	NA	NA	NA	-50779	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.000000	0.398010	43(GGCTAGAAAAGA,-,0.00)
mm_97319.1	chr11	76902084	76902284	+	1	NA	NA	NA	-2361	NM_025655	66601	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.010000	0.457711	
mm_33548.1	chr4	130934720	130934920	+	1	NA	NA	NA	-9565	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.030000	0.527363	
mm_118333.1	chr13	113880295	113880495	-	1	NA	NA	NA	85887	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.015000	0.338308	-83(CCTTTTATATTT,+,0.00)
mm_72971.1	chr8	92882033	92882233	+	1	NA	NA	NA	-19262	NM_027112	69543	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	0.010000	0.517413	
mm_167139.1	chr7	127561658	127561858	+	1	NA	NA	NA	535	NM_001304267	105180375	Mm.428042	NM_001304267	ENSMUSG00000106715	Tmem265	-	transmembrane protein 265	protein-coding	0.010000	0.482587	
mm_29603.1	chr3	121205382	121205582	-	1	NA	NA	NA	-33787	NM_025637	66568	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	0.000000	0.313433	
mm_151623.1	chr19	3907002	3907202	-	1	NA	NA	NA	31	NM_001136091	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.065000	0.671642	
mm_134111.1	chr16	9995613	9995813	-	1	NA	NA	NA	-3180	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.055000	0.592040	
mm_110201.1	chr12	27340659	27340859	-	1	NA	NA	NA	1959	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.030000	0.462687	-14(CCCTTTAGACGG,+,0.00)
mm_113365.1	chr13	32965403	32965603	+	1	NA	NA	NA	-10	NM_011454	20708	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	0.015000	0.606965	
mm_67103.1	chr7	69909536	69909736	-	1	NA	NA	NA	413542	NR_045940	73796	Mm.410832	NR_045940	ENSMUSG00000108885	4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA	0.005000	0.557214	
mm_10031.1	chr1	192137861	192138061	-	1	NA	NA	NA	79	NM_001290278	214742	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	0.105000	0.721393	
mm_143827.1	chr17	84004253	84004453	-	1	NA	NA	NA	5801	NR_130994	78148	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.015000	0.507463	41(CCTTAAAGACTC,+,0.00)
mm_3651.1	chr1	153090244	153090444	+	1	NA	NA	NA	96103	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.005000	0.532338	
mm_128121.1	chr15	31224663	31224863	-	1	NA	NA	NA	378	NM_146057	223453	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.055000	0.542289	
mm_29684.1	chr3	123026109	123026309	-	1	NA	NA	NA	8778	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.015000	0.417910	
mm_14890.1	chr2	149085461	149085661	+	1	NA	NA	NA	-210049	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.010000	0.283582	
mm_18604.1	chr2	68232938	68233138	-	1	NA	NA	NA	128366	NM_020283	26877	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	0.005000	0.432836	
mm_8691.1	chr1	157256596	157256796	-	1	NA	NA	NA	-148016	NM_001305063	73435	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	0.015000	0.512438	
mm_129832.1	chr15	83149187	83149387	-	1	NA	NA	NA	49	NM_178627	73826	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0.150000	0.691542	
mm_83685.1	chr9	50507660	50507860	-	1	NA	NA	NA	-2955	NR_040714	69631	Mm.414996	NR_040714	ENSMUSG00000101304	Plet1os	2310014F07Rik	placenta expressed transcript 1, opposite strand	ncRNA	0.030000	0.482587	
mm_10464.1	chr2	14314339	14314539	+	1	NA	NA	NA	53436	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.000000	0.492537	
mm_70047.1	chr7	142577955	142578155	-	1	NA	NA	NA	91	NR_130974	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.040000	0.636816	
mm_51428.1	chr6	78428457	78428657	+	1	NA	NA	NA	2574	NM_009042	19692	Mm.142731	NM_009042	ENSMUSG00000059654	Reg1	-	regenerating islet-derived 1	protein-coding	0.000000	0.333333	
mm_58319.1	chr6	146460042	146460242	-	1	NA	NA	NA	42081	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.015000	0.447761	
mm_95712.1	chr11	54516062	54516262	+	1	NA	NA	NA	-6683	NM_001252494	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.000000	0.263682	26(GCCTTTTTAAAA,-,0.00)
mm_156448.1	chrX	142687128	142687328	+	1	NA	NA	NA	5502	NM_001199360	209497	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	0.005000	0.363184	-29(GTCTTTTAAAAA,-,0.00),-28(TCTTTTAAAAAC,+,0.00)
mm_146091.1	chr18	73573390	73573590	+	1	NA	NA	NA	785	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.110000	0.746269	
mm_86181.1	chr9	119190317	119190517	-	1	NA	NA	NA	-24	NM_001037749	382113	Mm.335525	NM_001037749	ENSMUSG00000070280	Slc22a14	Gm1128	solute carrier family 22 (organic cation transporter), member 14	protein-coding	0.010000	0.552239	
mm_43541.1	chr5	137510333	137510533	+	1	NA	NA	NA	-8004	NM_028753	74097	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	0.155000	0.781095	
mm_131625.1	chr16	20107449	20107649	+	1	NA	NA	NA	9995	NM_029436	75785	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	0.035000	0.512438	
mm_16793.1	chr2	10080326	10080526	-	1	NA	NA	NA	84	NM_020615	11949	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	0.140000	0.691542	
mm_135819.1	chr16	58415221	58415421	-	1	NA	NA	NA	6786	NM_028523	73379	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.010000	0.497512	
mm_113059.1	chr13	23735068	23735268	+	1	NA	NA	NA	-3639	NM_015786	50708	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	0.005000	0.457711	
mm_54381.1	chr6	31211115	31211315	-	1	NA	NA	NA	7259	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.010000	0.442786	
mm_137358.1	chr17	25318553	25318753	+	1	NA	NA	NA	-1	NM_053260	114662	Mm.207082	NM_053260	ENSMUSG00000034039	Prss29	D19363|Isp2|mISP-2	protease, serine 29	protein-coding	0.000000	0.507463	-31(GCATATAAACCC,+,0.00)
mm_100615.1	chr11	121544109	121544309	+	1	NA	NA	NA	-24867	NM_178763	319530	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.030000	0.587065	
mm_111487.1	chr12	98901170	98901370	-	1	NA	NA	NA	214	NM_001081191	319670	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	0.120000	0.721393	
mm_82912.1	chr9	34948693	34948893	-	1	NA	NA	NA	-167935	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.015000	0.437811	
mm_63227.1	chr7	126428988	126429188	+	1	NA	NA	NA	321	NM_030566	70314	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	0.100000	0.681592	
mm_35492.1	chr4	40948146	40948346	-	1	NA	NA	NA	48	NM_009736	12017	Mm.688	NM_009736	ENSMUSG00000028416	Bag1	BAG-1|Rap46	BCL2-associated athanogene 1	protein-coding	0.140000	0.741294	
mm_165438.1	chr2	154009108	154009308	+	1	NA	NA	NA	932	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.005000	0.447761	
mm_28629.1	chr3	95140002	95140202	-	1	NA	NA	NA	-916	NR_106175	102465890		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	0.040000	0.601990	
mm_63867.1	chr7	135684273	135684473	+	1	NA	NA	NA	32006	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.497512	
mm_4518.1	chr1	175036273	175036473	+	1	NA	NA	NA	-114554	NM_011825	23893	Mm.25760	NM_011825	ENSMUSG00000050069	Grem2	Gremlin2|Prdc	gremlin 2, DAN family BMP antagonist	protein-coding	0.005000	0.393035	
mm_162763.1	chr10	62339205	62339405	-	1	NA	NA	NA	1116	NM_001146100	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.030000	0.482587	
mm_9437.1	chr1	172526733	172526933	-	1	NA	NA	NA	5703	NM_027972	71870	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	0.050000	0.562189	
mm_104559.1	chr11	96828084	96828284	-	1	NA	NA	NA	1318	NM_001130450	18023	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	0.005000	0.477612	
mm_111621.1	chr12	102421236	102421436	-	1	NA	NA	NA	18477	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.000000	0.378109	84(CCTTATATACAA,+,0.00)
mm_135617.1	chr16	52271397	52271597	-	1	NA	NA	NA	181584	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.328358	
mm_124148.1	chr14	90556662	90556862	-	1	NA	NA	NA	429871	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA	0.005000	0.427861	
mm_32507.1	chr4	108478801	108479001	+	1	NA	NA	NA	19475	NM_175472	230594	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.010000	0.323383	
mm_38332.1	chr4	137437710	137437910	-	1	NA	NA	NA	-7290	NM_026419	67868	Mm.297477	NM_026419	ENSMUSG00000023433	Cela3b	0910001F22Rik|2310074F01Rik|AI504000|Ela3|Ela3b	chymotrypsin-like elastase family, member 3B	protein-coding	0.015000	0.547264	
mm_110617.1	chr12	56978602	56978802	-	1	NA	NA	NA	181941	NM_001167976	217593	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0.010000	0.298507	
mm_131963.1	chr16	24609183	24609383	+	1	NA	NA	NA	79969	NR_038091	624582	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.005000	0.398010	
mm_94946.1	chr11	29718717	29718917	+	1	NA	NA	NA	254	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.025000	0.417910	
mm_74984.1	chr8	27141924	27142124	-	1	NA	NA	NA	-886	NR_045840	71082	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.020000	0.467662	55(AAATTTAAAAGG,-,0.00)
mm_130478.1	chr15	98738652	98738852	-	1	NA	NA	NA	-10554	NM_024169	66120	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.010000	0.567164	
mm_135150.1	chr16	35857646	35857846	-	1	NA	NA	NA	13636	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.010000	0.432836	
mm_158673.1	chrX	157598549	157598749	-	1	NA	NA	NA	66	NM_172307	270669	Mm.37577	NM_172307	ENSMUSG00000046873	Mbtps2	9630032G22Rik|AI662535	membrane-bound transcription factor peptidase, site 2	protein-coding	0.105000	0.661692	
mm_52890.1	chr6	122578315	122578515	+	1	NA	NA	NA	24029	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.000000	0.472637	
mm_141165.1	chr17	26531590	26531790	-	1	NA	NA	NA	-23218	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.020000	0.497512	
mm_61822.1	chr7	87586381	87586581	+	1	NA	NA	NA	2313	NM_001143834	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0.025000	0.547264	-38(CTCTATAAATAC,-,0.00)
mm_41423.1	chr5	90892386	90892586	+	1	NA	NA	NA	1241	NM_008176	14825	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.010000	0.472637	
mm_67461.1	chr7	80403274	80403474	-	1	NA	NA	NA	-562	NM_011046	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.020000	0.487562	-34(AACCATAAAAGG,-,0.00)
mm_66277.1	chr7	37769319	37769519	-	1	NA	NA	NA	333	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.040000	0.487562	-6(TTTTTTAAACAC,+,0.00)
mm_20821.1	chr2	145884810	145885010	-	1	NA	NA	NA	-18331	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.030000	0.527363	-4(GCATTAAGAGTC,+,0.00)
mm_68992.1	chr7	126625389	126625589	-	1	NA	NA	NA	-19	NM_019738	56312	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	0.015000	0.557214	
mm_170818.1	chr2	176486676	176486876	-	1	NA	NA	NA	-27	NM_001099349	100043381		NM_001099349	ENSMUSG00000078880	Gm14308	OTTMUSG00000016254	predicted gene 14308	protein-coding	0.015000	0.497512	
mm_99209.1	chr11	101023014	101023214	+	1	NA	NA	NA	-7226	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.005000	0.427861	
mm_55111.1	chr6	50382831	50383031	-	1	NA	NA	NA	-94	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.020000	0.457711	
mm_169361.1	chr1	43188968	43189168	+	1	NA	NA	NA	7693	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.055000	0.527363	
mm_160075.1	chr7	7136646	7136846	-	1	NA	NA	NA	9	NM_029584	76373	Mm.159732	NM_029584	ENSMUSG00000063535	Zfp773	2810409K11Rik	zinc finger protein 773	protein-coding	0.030000	0.497512	
mm_94490.1	chr11	6676677	6676877	+	1	NA	NA	NA	-16541	NR_028586	100041311	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	OTTMUSG00000005125|OTTMUSG00000005127	predicted gene 11978	pseudo	0.015000	0.601990	
mm_34974.1	chr4	156012503	156012703	+	1	NA	NA	NA	-1092	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.005000	0.402985	
mm_94073.1	chr10	128409061	128409261	-	1	NA	NA	NA	635	NM_027257	69917	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	0.025000	0.542289	
mm_51997.1	chr6	92449092	92449292	+	1	NA	NA	NA	32200	NM_001134460	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.010000	0.542289	
mm_49849.1	chr6	38369269	38369469	+	1	NA	NA	NA	-12155	NM_153600	264134	Mm.253446	NM_153600	ENSMUSG00000056832	Ttc26	9330141E21Rik|9430097H08Rik|hop|hpy	tetratricopeptide repeat domain 26	protein-coding	0.030000	0.482587	
mm_146639.1	chr18	10610255	10610455	-	1	NA	NA	NA	-3	NM_001081222	77805	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	0.140000	0.716418	
mm_57573.1	chr6	127142174	127142374	-	1	NA	NA	NA	-7115	NR_040274	77558	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.020000	0.527363	
mm_18933.1	chr2	76750051	76750251	-	1	NA	NA	NA	74836	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.025000	0.507463	
mm_69297.1	chr7	128275984	128276184	-	1	NA	NA	NA	10387	NM_133254	246787	Mm.38870	NM_133254	ENSMUSG00000030781	Slc5a2	Sglt2	solute carrier family 5 (sodium/glucose cotransporter), member 2	protein-coding	0.000000	0.507463	
mm_98133.1	chr11	87471570	87471770	+	1	NA	NA	NA	44079	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.015000	0.308458	
mm_15637.1	chr2	163054477	163054677	+	1	NA	NA	NA	-58	NM_008652	17865	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	0.105000	0.696517	
mm_155323.1	chrX	62487686	62487886	+	1	NA	NA	NA	28283	NR_045443	75545	Mm.391270	NR_045442	ENSMUSG00000085757	1700019B21Rik	-	RIKEN cDNA 1700019B21 gene	ncRNA	0.000000	0.189055	
mm_61570.1	chr7	79743056	79743256	+	1	NA	NA	NA	-7	NM_001037927	626359	Mm.387216	NM_001037927	ENSMUSG00000039099	Wdr93	EG626359	WD repeat domain 93	protein-coding	0.060000	0.577114	
mm_21651.1	chr2	164334156	164334356	-	1	NA	NA	NA	1491	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.015000	0.502488	
mm_107562.1	chr12	42028418	42028618	+	1	NA	NA	NA	-542461	NM_010733	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.005000	0.477612	
mm_20430.1	chr2	129306072	129306272	-	1	NA	NA	NA	3800	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.010000	0.447761	
mm_55495.1	chr6	69649272	69649472	-	1	NA	NA	NA	-322198	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.373134	
mm_118855.1	chr14	25751318	25751518	+	1	NA	NA	NA	17438	NM_001101433	71918	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.015000	0.482587	
mm_71927.1	chr8	70247964	70248164	+	1	NA	NA	NA	-13642	NM_133972	76813	Mm.383251	NM_133972	ENSMUSG00000002343	Armc6	2410153K17Rik|AW554412	armadillo repeat containing 6	protein-coding	0.005000	0.487562	
mm_172001.1	chr6	107070783	107070983	+	1	NA	NA	NA	-270796	NM_175357	58799	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.010000	0.502488	
mm_88757.1	chr10	80329449	80329649	+	1	NA	NA	NA	-76	NM_008793	18551	Mm.299916	NM_008793	ENSMUSG00000020131	Pcsk4	AI647044|L21221|NEC 3|NEC3|PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding	0.040000	0.626866	
mm_72751.1	chr8	85221384	85221584	+	1	NA	NA	NA	-9013	NM_146859	258858	Mm.354727	NM_146859	ENSMUSG00000051952	Olfr371	MOR141-3	olfactory receptor 371	protein-coding	0.010000	0.507463	-35(TTCTATATAAAC,-,0.00)
mm_24635.1	chr3	94342021	94342221	+	1	NA	NA	NA	22	NM_025416	66198	Mm.180200	NM_025416	ENSMUSG00000028148	Them5	1110007B02Rik|1110038F21Rik	thioesterase superfamily member 5	protein-coding	0.005000	0.557214	
mm_35329.1	chr4	26346724	26346924	-	1	NA	NA	NA	-172	NM_172865	242362	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.070000	0.656716	
mm_107555.1	chr12	41257185	41257385	+	1	NA	NA	NA	228772	NM_001271708	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.000000	0.258706	
mm_66645.1	chr7	45655560	45655760	-	1	NA	NA	NA	10734	NM_018876	14344	Mm.290046	NM_018876	ENSMUSG00000055978	Fut2	-	fucosyltransferase 2	protein-coding	0.015000	0.407960	
mm_92428.1	chr10	77112048	77112248	-	1	NA	NA	NA	1557	NM_001109991	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.000000	0.472637	
mm_43227.1	chr5	129846908	129847108	+	1	NA	NA	NA	18	NM_026445	67902	Mm.103546	NM_026445	ENSMUSG00000025538	Sumf2	2610040F05Rik	sulfatase modifying factor 2	protein-coding	0.050000	0.631841	
mm_118414.1	chr14	7791369	7791569	+	1	NA	NA	NA	-26488	NM_001081427	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.065000	0.572139	
mm_80930.1	chr9	102559200	102559400	+	1	NA	NA	NA	53162	NM_024291	16716	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	0.010000	0.457711	
mm_99548.1	chr11	103360390	103360590	+	1	NA	NA	NA	3202	NM_183288	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.135000	0.776119	
mm_159009.1	chr1	163951232	163951432	+	1	NA	NA	NA	21567	NM_028776	240880	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0.010000	0.437811	
mm_80668.1	chr9	90162979	90163179	+	1	NA	NA	NA	101	NM_001311115	108153	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.050000	0.567164	
mm_88510.1	chr10	77978596	77978796	+	1	NA	NA	NA	46	NM_026431	67884	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0.105000	0.706468	
mm_61994.1	chr7	91118212	91118412	+	1	NA	NA	NA	27526	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.010000	0.358209	
mm_140034.1	chr17	74338822	74339022	+	1	NA	NA	NA	-65	NM_001162870	50850	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	0.155000	0.796020	
mm_135371.1	chr16	44085907	44086107	-	1	NA	NA	NA	53012	NM_007508	11964	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.015000	0.447761	
mm_76365.1	chr8	84773908	84774108	-	1	NA	NA	NA	361	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.055000	0.626866	
mm_46303.1	chr5	100500539	100500739	-	1	NA	NA	NA	0	NM_172714	231506	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0.155000	0.781095	
mm_9187.1	chr1	171129633	171129833	-	1	NA	NA	NA	8072	NM_001081275	75472	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.015000	0.527363	
mm_122202.1	chr14	31781547	31781747	-	1	NA	NA	NA	48768	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.030000	0.512438	
mm_79151.1	chr9	47739606	47739806	+	1	NA	NA	NA	78502	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.015000	0.432836	
mm_28100.1	chr3	86142587	86142787	-	1	NA	NA	NA	-19	NM_016959	20091	Mm.391785	NM_016959	ENSMUSG00000028081	Rps3a1	Rps3a	ribosomal protein S3A1	protein-coding	0.140000	0.661692	
mm_133098.1	chr16	64852229	64852429	+	1	NA	NA	NA	244	NM_178647	106143	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.135000	0.800995	
mm_161648.1	chr17	6138293	6138493	+	1	NA	NA	NA	245	NM_054040	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.020000	0.442786	
mm_162969.1	chr11	11462105	11462305	-	1	NA	NA	NA	214	NM_015785	53604	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	0.170000	0.791045	
mm_56621.1	chr6	112721178	112721378	-	1	NA	NA	NA	-24608	NM_001167730	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.010000	0.472637	
mm_6888.1	chr1	84695885	84696085	-	1	NA	NA	NA	146	NR_039588	100628595		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0.070000	0.681592	
mm_4126.1	chr1	169969669	169969869	+	1	NA	NA	NA	360	NR_040438	67303	Mm.396611	NR_040438	ENSMUSG00000097503	3110045C21Rik	AI838577	RIKEN cDNA 3110045C21 gene	ncRNA	0.020000	0.422886	
mm_43044.1	chr5	124075215	124075415	+	1	NA	NA	NA	20483	NM_019875	56325	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.020000	0.522388	
mm_15398.1	chr2	156721572	156721772	+	1	NA	NA	NA	393	NM_001042487	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.015000	0.527363	
mm_153797.1	chr19	46039083	46039283	-	1	NA	NA	NA	438	NM_010697	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.060000	0.671642	
mm_155278.1	chrX	61120733	61120933	+	1	NA	NA	NA	4455	NR_030706	331424	Mm.127263	NM_177916	ENSMUSG00000071753	C230004F18Rik	-	RIKEN cDNA C230004F18 gene	ncRNA	0.005000	0.437811	83(CTCTATAAAATG,-,0.00)
mm_62400.1	chr7	101108676	101108876	+	1	NA	NA	NA	1	NM_199012	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.115000	0.786070	
mm_57576.1	chr6	127148703	127148903	-	1	NA	NA	NA	-586	NR_040274	77558	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.020000	0.522388	
mm_48540.1	chr5	142905075	142905275	-	1	NA	NA	NA	1579	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.025000	0.512438	
mm_43182.1	chr5	128443456	128443656	+	1	NA	NA	NA	-10479	NM_172885	243274	Mm.447698	NM_172885	ENSMUSG00000034310	Tmem132d	C630028F04Rik	transmembrane protein 132D	protein-coding	0.010000	0.532338	
mm_65087.1	chr7	19260898	19261098	-	1	NA	NA	NA	10856	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.000000	0.681592	
mm_70731.1	chr8	18846402	18846602	+	1	NA	NA	NA	223	NM_026792	52123	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	0.135000	0.776119	
mm_60504.1	chr7	44479359	44479559	+	1	NA	NA	NA	-5058	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.010000	0.447761	
mm_88517.1	chr10	78050549	78050749	+	1	NA	NA	NA	690	NM_001284197	54427	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.020000	0.537313	
mm_126991.1	chr15	94628814	94629014	+	1	NA	NA	NA	-271	NM_178789	320709	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0.055000	0.651741	
mm_117399.1	chr13	73692472	73692672	-	1	NA	NA	NA	-7254	NM_027780	71390	Mm.105251	NM_027780		Slc6a19os	5430425J12Rik	solute carrier family 6 (neurotransmitter transporter), member 19, opposite strand	protein-coding	0.020000	0.577114	
mm_123594.1	chr14	67713120	67713320	-	1	NA	NA	NA	2390	NM_001110162	108912	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	0.040000	0.552239	
mm_160973.1	chr11	100440853	100441053	-	1	NA	NA	NA	136	NM_026561	68106	Mm.28738	NM_026561	ENSMUSG00000017176	Nt5c3b	2610037D24Rik|AI841843|C330027I04Rik|Nt5c3l	5'-nucleotidase, cytosolic IIIB	protein-coding	0.105000	0.696517	
mm_138676.1	chr17	35916354	35916554	+	1	NA	NA	NA	-14	NM_001347380	66973	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik	mitochondrial ribosomal protein S18B	protein-coding	0.100000	0.621891	
mm_27399.1	chr3	51224511	51224711	-	1	NA	NA	NA	164	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.095000	0.681592	
mm_42257.1	chr5	114022188	114022388	+	1	NA	NA	NA	17480	NM_001286396	13142	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	0.005000	0.422886	
mm_40998.1	chr5	77351138	77351338	+	1	NA	NA	NA	40754	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.030000	0.452736	-39(GTTTTTAAATGG,-,0.00)
mm_111475.1	chr12	98683589	98683789	-	1	NA	NA	NA	50956	NM_011877	24000	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0.030000	0.462687	
mm_135754.1	chr16	55994877	55995077	-	1	NA	NA	NA	-20360	NR_027965	66391	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	0.015000	0.517413	
mm_500.1	chr1	36986163	36986363	+	1	NA	NA	NA	-46736	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.010000	0.557214	22(CCCTATATAAGC,+,0.00),22(CCCTATATAAGC,-,0.00)
mm_136056.1	chr16	78577111	78577311	-	1	NA	NA	NA	-523	NM_025967	67102	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.030000	0.383085	
mm_60179.1	chr7	42488671	42488871	+	1	NA	NA	NA	16982	NM_001309389	434178	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	0.015000	0.378109	
mm_57986.1	chr6	136003358	136003558	-	1	NA	NA	NA	170053	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.010000	0.368159	
mm_165390.1	chr2	131855160	131855360	-	1	NA	NA	NA	4487	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	0.000000	0.517413	
mm_142957.1	chr17	56120204	56120404	-	1	NA	NA	NA	1642	NM_029796	76905	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0.065000	0.661692	
mm_79034.1	chr9	46118920	46119120	+	1	NA	NA	NA	106200	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.010000	0.427861	-6(TTTTTTAAAGCT,+,0.00)
mm_34937.1	chr4	155841057	155841257	+	1	NA	NA	NA	1477	NM_024263	74761	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	0.115000	0.616915	
mm_27137.1	chr3	32599279	32599479	-	1	NA	NA	NA	17156	NM_013531	14696	Mm.139192	NM_013531	ENSMUSG00000027669	Gnb4	6720453A21Rik|G(beta)4	guanine nucleotide binding protein (G protein), beta 4	protein-coding	0.005000	0.507463	
mm_1929.1	chr1	86110797	86110997	+	1	NA	NA	NA	1073	NM_008311	15559	Mm.439747	NM_008311	ENSMUSG00000026228	Htr2b	5-HT2B|AJ012488|AV377389	5-hydroxytryptamine (serotonin) receptor 2B	protein-coding	0.005000	0.437811	
mm_155319.1	chrX	62287054	62287254	+	1	NA	NA	NA	12	NM_001199996	74437	Mm.85792	NM_001199996	ENSMUSG00000045330	4933402E13Rik	-	RIKEN cDNA 4933402E13 gene	protein-coding	0.025000	0.537313	
mm_33840.1	chr4	135759613	135759813	+	1	NA	NA	NA	-2	NM_001085509	242702	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	0.025000	0.552239	
mm_61288.1	chr7	67645388	67645588	+	1	NA	NA	NA	-252	NR_028143	67867	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	0.055000	0.527363	
mm_13338.1	chr2	102787369	102787569	+	1	NA	NA	NA	81031	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.005000	0.502488	
mm_30684.1	chr4	11321834	11322034	+	1	NA	NA	NA	197	NM_001081201	381510	Mm.331486	NM_001081201	ENSMUSG00000045205	Dpy19l4	Gm1023|Narg3	dpy-19-like 4 (C. elegans)	protein-coding	0.135000	0.721393	
mm_23147.1	chr3	39979640	39979840	+	1	NA	NA	NA	543172	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.005000	0.442786	
mm_107682.1	chr12	54656663	54656863	+	1	NA	NA	NA	-191	NM_134054	104725	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	0.085000	0.641791	78(GCCCTTAAGAGG,-,0.00),79(CCCTTAAGAGGC,+,0.00)
mm_60053.1	chr7	31149883	31150083	+	1	NA	NA	NA	1067	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.020000	0.502488	
mm_75066.1	chr8	33806663	33806863	-	1	NA	NA	NA	-58993	NM_001206849	72632	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	0.030000	0.582090	
mm_140961.1	chr17	24644888	24645088	-	1	NA	NA	NA	-31	NM_023449	65962	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0.020000	0.621891	
mm_108963.1	chr12	102398240	102398440	+	1	NA	NA	NA	41473	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.015000	0.517413	
mm_38153.1	chr4	134927270	134927470	-	1	NA	NA	NA	-3610	NM_026780	68592	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0.000000	0.278607	55(GTCTTTAAAAAA,-,0.00),74(TTGTATATAAGC,-,0.00)
mm_40979.1	chr5	77097357	77097557	+	1	NA	NA	NA	-2190	NM_001159900	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.025000	0.532338	
mm_96323.1	chr11	64079461	64079661	+	1	NA	NA	NA	77	NR_033780	66456	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA	0.080000	0.611940	-30(GAGCTTATAAAG,-,0.00),-28(GCTTATAAAGAT,+,0.00)
mm_169798.1	chr16	16820043	16820243	-	1	NA	NA	NA	53	NM_001258458	665562	Mm.444358	NM_001258458		Rpl31-ps12	EG665562|Gm7689	ribosomal protein L31, pseudogene 1 2	protein-coding	0.040000	0.487562	
mm_157328.1	chrX	23318803	23319003	-	1	NA	NA	NA	-33344	NM_001290476	67455	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	0.000000	0.437811	59(TAGCATAAAAGC,-,0.00)
mm_126140.1	chr15	78348122	78348322	+	1	NA	NA	NA	-377	NR_106137	102465776		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0.015000	0.532338	
mm_81890.1	chr9	119402148	119402348	+	1	NA	NA	NA	70	NM_007397	11481	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	0.135000	0.800995	
mm_14922.1	chr2	151373837	151374037	+	1	NA	NA	NA	58512	NR_131976	100125594	Mm.381283	NR_131976	ENSMUSG00000087495	LOC100125594	-	uncharacterized LOC100125594	ncRNA	0.025000	0.507463	
mm_160614.1	chr9	88719700	88719900	-	1	NA	NA	NA	-2	NM_001128601	100039707	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0.070000	0.656716	
mm_16828.1	chr2	11484682	11484882	-	1	NA	NA	NA	17308	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.035000	0.512438	
mm_106867.1	chr12	8009714	8009914	+	1	NA	NA	NA	32137	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.000000	0.402985	
mm_69067.1	chr7	126928698	126928898	-	1	NA	NA	NA	-81	NM_172747	233877	Mm.245897	NM_172747	ENSMUSG00000030685	Kctd13	1500003N18Rik|AV259508|PDIP1alpha|Pdip1|Poldip1	potassium channel tetramerisation domain containing 13	protein-coding	0.105000	0.676617	
mm_167049.1	chr7	82867689	82867889	+	1	NA	NA	NA	456	NM_175366	108797	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0.110000	0.681592	
mm_23949.1	chr3	84843131	84843331	+	1	NA	NA	NA	-20914	NM_001177774	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.005000	0.328358	19(TACTTTTAAAGC,-,0.00),20(ACTTTTAAAGCT,+,0.00)
mm_3789.1	chr1	157412159	157412359	+	1	NA	NA	NA	-93	NR_027984	69953	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	0.130000	0.805970	
mm_50632.1	chr6	51171108	51171308	+	1	NA	NA	NA	98702	NR_029719	387166		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.035000	0.437811	
mm_137793.1	chr17	29660616	29660816	+	1	NA	NA	NA	121	NM_028791	74157	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	0.140000	0.756219	
mm_81495.1	chr9	110032033	110032233	+	1	NA	NA	NA	-19888	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.005000	0.452736	
mm_67416.1	chr7	80232495	80232695	-	1	NA	NA	NA	210	NM_001291276	23991	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0.120000	0.736318	
mm_50809.1	chr6	54326737	54326937	+	1	NA	NA	NA	-175	NM_030024	78004	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	0.055000	0.646766	
mm_21920.1	chr2	166904436	166904636	-	1	NA	NA	NA	-1560	NM_023565	110750	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0.010000	0.527363	
mm_136204.1	chr16	89826315	89826515	-	1	NA	NA	NA	-8063	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.010000	0.462687	
mm_66074.1	chr7	30914755	30914955	-	1	NA	NA	NA	67	NM_001346084	17136	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	0.030000	0.681592	
mm_106934.1	chr12	8674040	8674240	+	1	NA	NA	NA	6	NM_001160222	80913	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.150000	0.771144	
mm_146144.1	chr18	74779095	74779295	+	1	NA	NA	NA	-17	NM_177470	52538	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	0.070000	0.691542	
mm_90532.1	chr10	128086216	128086416	+	1	NA	NA	NA	1030	NR_030442	751518		NR_030442	ENSMUSG00000093245	Mir677	Mirn677|mir-677|mmu-mir-677	microRNA 677	ncRNA	0.015000	0.492537	
mm_41389.1	chr5	90769358	90769558	+	1	NA	NA	NA	940	NM_023785	57349	Mm.293614	NM_023785	ENSMUSG00000029372	Ppbp	2400003M24Rik|AI854500|CTAP3|CTAPIII|Cxcl7|LA-PF4|LDGF|MDGF|NAP-2|NAP-2-L1|Scyb7|TGB|TGB1|THBGB1|b-TG1|beta-TG	pro-platelet basic protein	protein-coding	0.015000	0.432836	
mm_37999.1	chr4	133673049	133673249	-	1	NA	NA	NA	-502	NM_001145956	230801	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.025000	0.517413	
mm_4472.1	chr1	173419261	173419461	+	1	NA	NA	NA	-1243	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.000000	0.402985	
mm_116596.1	chr13	48546359	48546559	-	1	NA	NA	NA	-8187	NR_029725	387244		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.160000	0.771144	
mm_67411.1	chr7	80098997	80099197	-	1	NA	NA	NA	16253	NM_173011	269951	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.035000	0.552239	
mm_31655.1	chr4	59868391	59868591	+	1	NA	NA	NA	46565	NM_021053	30936	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0.005000	0.467662	
mm_133626.1	chr16	91563482	91563682	+	1	NA	NA	NA	16488	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.010000	0.393035	
mm_5560.1	chr1	38824552	38824752	-	1	NA	NA	NA	-3437	NM_001029878	381338	Mm.487137	NM_028403	ENSMUSG00000048814	Lonrf2	2900060P06Rik|AI851349	LON peptidase N-terminal domain and ring finger 2	protein-coding	0.005000	0.358209	
mm_129404.1	chr15	78285134	78285334	-	1	NA	NA	NA	-385	NR_106137	102465776		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0.010000	0.517413	
mm_164786.1	chr18	9212089	9212289	+	1	NA	NA	NA	-667	NM_008058	14370	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0.045000	0.562189	
mm_8004.1	chr1	134556895	134557095	-	1	NA	NA	NA	-3183	NM_152895	75605	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0.075000	0.731343	
mm_132084.1	chr16	30510582	30510782	+	1	NA	NA	NA	39896	NM_172614	224090	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0.050000	0.651741	
mm_161141.1	chr13	21478757	21478957	+	1	NA	NA	NA	8	NM_001039115	544922	Mm.441300	NM_001039115	ENSMUSG00000054931	Zkscan4	AI841875|Gm11272|OTTMUSG00000000421	zinc finger with KRAB and SCAN domains 4	protein-coding	0.020000	0.482587	
mm_111685.1	chr12	103442269	103442469	-	1	NA	NA	NA	1311	NM_029803	76933	Mm.271275	NM_029803	ENSMUSG00000079017	Ifi27l2a	2310061N23Rik|Ifi27|Isg12|Isg12(b1)	interferon, alpha-inducible protein 27 like 2A	protein-coding	0.000000	0.537313	
mm_170535.1	chr19	3851676	3851876	+	1	NA	NA	NA	3	NR_073190	12660	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.140000	0.711443	
mm_50090.1	chr6	41524832	41525032	+	1	NA	NA	NA	3156	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.522388	
mm_21821.1	chr2	165287724	165287924	-	1	NA	NA	NA	14	NM_001252575	228875	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.075000	0.676617	
mm_59789.1	chr7	28972519	28972719	+	1	NA	NA	NA	9269	NM_001285943	73830	Mm.29714	NM_028659	ENSMUSG00000053565	Eif3k	1200009C21Rik|Eif3s12	eukaryotic translation initiation factor 3, subunit K	protein-coding	0.025000	0.557214	
mm_131820.1	chr16	22920355	22920555	+	1	NA	NA	NA	233	NM_001083904	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.015000	0.497512	
mm_168228.1	chr10	80053586	80053786	+	1	NA	NA	NA	198	NM_008162	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.080000	0.686567	
mm_130329.1	chr15	97719587	97719787	-	1	NA	NA	NA	1463	NM_008902	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.015000	0.542289	
mm_109133.1	chr12	105899761	105899961	+	1	NA	NA	NA	-110402	NM_011705	22367	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0.000000	0.467662	-34(CTTCTTAAAAGG,-,0.00),-32(TCTTAAAAGGCC,+,0.00)
mm_123920.1	chr14	73364508	73364708	-	1	NA	NA	NA	20663	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.050000	0.532338	
mm_85004.1	chr9	86880397	86880597	-	1	NA	NA	NA	-48	NM_001277983	20616	Mm.281651	NM_013669	ENSMUSG00000033419	Snap91	91kDa|AP180|F1-20|mKIAA0656	synaptosomal-associated protein 91	protein-coding	0.140000	0.761194	
mm_31930.1	chr4	86053604	86053804	+	1	NA	NA	NA	-211	NM_029967	77739	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	0.030000	0.547264	
mm_143072.1	chr17	57023450	57023650	-	1	NA	NA	NA	7957	NM_010613	16549	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0.010000	0.592040	
mm_167286.1	chr8	40511383	40511583	+	1	NA	NA	NA	271	NM_001271543	18983	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0.110000	0.721393	
mm_71328.1	chr8	44961343	44961543	+	1	NA	NA	NA	11235	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.010000	0.308458	
mm_66059.1	chr7	30744084	30744284	-	1	NA	NA	NA	-503	NM_001290631	14447	Mm.436562	NM_008085	ENSMUSG00000061099	Gapdhs	Gapd-s|Gapds	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein-coding	0.015000	0.527363	
mm_103722.1	chr11	79530382	79530582	-	1	NA	NA	NA	127	NM_146023	101488212	Mm.439665	NM_146023	ENSMUSG00000070354	Gm21975	Evi2a-evi2b	predicted gene 21975	protein-coding	0.020000	0.417910	1(CTCTTTAAAAAA,-,0.00)
mm_123871.1	chr14	72589756	72589956	-	1	NA	NA	NA	120147	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.030000	0.532338	
mm_157197.1	chrX	12128299	12128499	-	1	NA	NA	NA	31947	NR_045434	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.110000	0.706468	
mm_167475.1	chr8	128359075	128359275	+	1	NA	NA	NA	-66	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.045000	0.552239	
mm_42924.1	chr5	122721702	122721902	+	1	NA	NA	NA	14258	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.000000	0.393035	
mm_137149.1	chr17	23679270	23679470	+	1	NA	NA	NA	5	NM_018777	54419	Mm.86421	NM_018777	ENSMUSG00000023906	Cldn6	AL024037	claudin 6	protein-coding	0.040000	0.547264	
mm_98309.1	chr11	90033542	90033742	+	1	NA	NA	NA	3294	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.010000	0.502488	
mm_33300.1	chr4	129007614	129007814	+	1	NA	NA	NA	14490	NM_001033966	11637	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.015000	0.502488	
mm_172295.1	chr6	97647799	97647999	-	1	NA	NA	NA	-30242	NM_145148	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.060000	0.507463	
mm_20120.1	chr2	121235724	121235924	-	1	NA	NA	NA	35583	NM_001290830	27223	Mm.215389	NM_013735	ENSMUSG00000043909	Trp53bp1	53BP1|Tp53bp1|m53BP1|p53BP1	transformation related protein 53 binding protein 1	protein-coding	0.020000	0.487562	
mm_100373.1	chr11	119145021	119145221	+	1	NA	NA	NA	9016	NR_105899	102465563		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA	0.040000	0.457711	
mm_52715.1	chr6	119481454	119481654	+	1	NA	NA	NA	1886	NM_133940	101358	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.020000	0.393035	
mm_152629.1	chr19	12491861	12492061	-	1	NA	NA	NA	10035	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.025000	0.582090	
mm_4091.1	chr1	167283818	167284018	+	1	NA	NA	NA	1209	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.070000	0.656716	
mm_94979.1	chr11	31733886	31734086	+	1	NA	NA	NA	-62124	NM_001024919	69556	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.015000	0.492537	-33(TTGTATAAAGGG,-,0.00)
mm_156058.1	chrX	109154207	109154407	+	1	NA	NA	NA	-42449	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.010000	0.422886	44(GCCTTTTTAGGC,-,0.00)
mm_61018.1	chr7	49397986	49398186	+	1	NA	NA	NA	151897	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.020000	0.477612	
mm_48075.1	chr5	136695527	136695727	-	1	NA	NA	NA	1450	NM_001085387	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.015000	0.547264	
mm_111701.1	chr12	103676624	103676824	-	1	NA	NA	NA	38	NM_001310472	194604		NM_001310472	ENSMUSG00000071179	Serpina16	Gm46	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 16	protein-coding	0.015000	0.537313	
mm_167169.1	chr7	137314153	137314353	-	1	NA	NA	NA	192	NM_001113415	13593	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.140000	0.701493	
mm_61152.1	chr7	58658138	58658338	+	1	NA	NA	NA	36	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.100000	0.726368	
mm_15555.1	chr2	158487847	158488047	+	1	NA	NA	NA	-14665	NM_145635	246747	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	0.000000	0.338308	
mm_93574.1	chr10	116581750	116581950	-	1	NA	NA	NA	-339	NM_001037846	72068	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.125000	0.756219	
mm_153867.1	chr19	46672968	46673168	-	1	NA	NA	NA	-68	NM_007809	13074	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.010000	0.532338	
mm_132387.1	chr16	34994758	34994958	+	1	NA	NA	NA	-27563	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.020000	0.452736	-75(CTTTATATAAAC,+,0.00),-59(CCTTTTATGGGA,+,0.00)
mm_143677.1	chr17	80053265	80053465	-	1	NA	NA	NA	8903	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.005000	0.467662	
mm_121756.1	chr14	19627344	19627544	-	1	NA	NA	NA	-24857	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.005000	0.452736	
mm_48834.1	chr5	149184866	149185066	-	1	NA	NA	NA	406	NM_001115149	231915	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	0.065000	0.587065	
mm_142961.1	chr17	56120706	56120906	-	1	NA	NA	NA	1140	NM_029796	76905	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0.060000	0.646766	
mm_49118.1	chr6	8509738	8509938	+	1	NA	NA	NA	238	NM_133236	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.160000	0.786070	
mm_50430.1	chr6	48843999	48844199	+	1	NA	NA	NA	2443	NM_001098271	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.030000	0.467662	
mm_74226.1	chr8	124067036	124067236	+	1	NA	NA	NA	43663	NM_001029876	382038	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	0.005000	0.487562	
mm_69003.1	chr7	126700808	126701008	-	1	NA	NA	NA	3312	NM_001301374	12721	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.025000	0.562189	
mm_32377.1	chr4	106315998	106316198	+	1	NA	NA	NA	-115	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.140000	0.766169	
mm_173048.1	chrX	120385880	120386080	+	1	NA	NA	NA	-72754	NM_001281531	624957		NM_001281531	ENSMUSG00000083616	H2afb3	EG624957|H2A.Bbd3|H2afb3-ps	H2A histone family, member B3	protein-coding	0.040000	0.631841	
mm_136838.1	chr17	12748277	12748477	+	1	NA	NA	NA	7066	NR_027784	104103	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.000000	0.457711	-75(TATTATAAAAGC,-,0.00)
mm_119768.1	chr14	54174300	54174500	+	1	NA	NA	NA	79529	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.398010	
mm_79851.1	chr9	64918634	64918834	+	1	NA	NA	NA	32873	NM_144813	214111	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	0.070000	0.562189	
mm_43023.1	chr5	123907998	123908198	+	1	NA	NA	NA	823	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.045000	0.522388	
mm_20023.1	chr2	119440090	119440290	-	1	NA	NA	NA	37439	NM_026574	68142	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	0.015000	0.477612	
mm_42241.1	chr5	113826923	113827123	+	1	NA	NA	NA	3478	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.020000	0.592040	
mm_34443.1	chr4	147985798	147985998	+	1	NA	NA	NA	110	NM_001287348	18158	Mm.2740	NM_008726	ENSMUSG00000029019	Nppb	AA408272|BNF|BNP	natriuretic peptide type B	protein-coding	0.035000	0.557214	-32(CAGTATAAAAGG,-,0.00)
mm_124086.1	chr14	78732538	78732738	-	1	NA	NA	NA	-7549	NM_001081336	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.160000	0.805970	
mm_124861.1	chr15	10035717	10035917	+	1	NA	NA	NA	-141421	NM_011169	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.005000	0.432836	
mm_79712.1	chr9	61372296	61372496	+	1	NA	NA	NA	30	NM_001083927	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.070000	0.542289	
mm_78569.1	chr9	36431749	36431949	+	1	NA	NA	NA	-35	NM_001167586	639025	Mm.386535	NM_001167586	ENSMUSG00000023093	Gm7257	EG639025|Pate-q|Pate12	predicted gene 7257	protein-coding	0.005000	0.492537	-35(GCCTATATGGGA,+,0.00)
mm_101647.1	chr11	36551308	36551508	-	1	NA	NA	NA	392833	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.005000	0.412935	
mm_138510.1	chr17	35236559	35236759	+	1	NA	NA	NA	63	NM_023179	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.055000	0.606965	
mm_61005.1	chr7	49347388	49347588	+	1	NA	NA	NA	101299	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.010000	0.507463	
mm_165381.1	chr2	129198408	129198608	-	1	NA	NA	NA	-265	NM_015747	20515	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.115000	0.731343	
mm_76927.1	chr8	105936861	105937061	-	1	NA	NA	NA	1431	NM_013640	19171	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0.035000	0.592040	
mm_162845.1	chr10	86346804	86347004	+	1	NA	NA	NA	46492	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.005000	0.313433	-1(TTTTTTATAGGA,+,0.00)
mm_110516.1	chr12	54860991	54861191	-	1	NA	NA	NA	1786	NM_007688	12632	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	0.030000	0.437811	
mm_111284.1	chr12	85373823	85374023	-	1	NA	NA	NA	794	NM_026775	68581	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.025000	0.437811	
mm_83625.1	chr9	48836241	48836441	-	1	NA	NA	NA	-396	NM_001033324	235320	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0.105000	0.776119	
mm_25205.1	chr3	103809505	103809705	+	1	NA	NA	NA	88	NM_001163553	67489	Mm.197568	NM_026193	ENSMUSG00000032952	Ap4b1	1810038H16Rik|AV004952|Ap4b4	adaptor-related protein complex AP-4, beta 1	protein-coding	0.070000	0.636816	
mm_134295.1	chr16	14275387	14275587	-	1	NA	NA	NA	15921	NM_001161775	17880	Mm.250705	NM_013607	ENSMUSG00000018830	Myh11	AV071570|SM1|SM2|smMHC	myosin, heavy polypeptide 11, smooth muscle	protein-coding	0.010000	0.432836	
mm_53008.1	chr6	123270787	123270987	+	1	NA	NA	NA	8780	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.005000	0.407960	21(TGCTTTAAATGA,-,0.00)
mm_105355.1	chr11	103028148	103028348	-	1	NA	NA	NA	-314	NM_008707	18107	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.070000	0.552239	-69(CGCCTTATAGGG,-,0.00),-67(CCTTATAGGGTG,+,0.00)
mm_90316.1	chr10	127063473	127063673	+	1	NA	NA	NA	-30	NM_009870	12567	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	0.085000	0.696517	
mm_125876.1	chr15	75626188	75626388	+	1	NA	NA	NA	9604	NM_011759	22701	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0.010000	0.507463	
mm_122346.1	chr14	38617840	38618040	-	1	NA	NA	NA	-280362	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA	0.005000	0.368159	
mm_135637.1	chr16	52346837	52347037	-	1	NA	NA	NA	106144	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.303483	
mm_54999.1	chr6	48833984	48834184	-	1	NA	NA	NA	6904	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.030000	0.537313	
mm_141333.1	chr17	28507382	28507582	-	1	NA	NA	NA	-21333	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.000000	0.562189	
mm_95038.1	chr11	32226413	32226613	+	1	NA	NA	NA	8	NM_010822	268395	Mm.263161	NM_010822	ENSMUSG00000020287	Mpg	9830006D05|AI326268|APNG|Aag|Mid1	N-methylpurine-DNA glycosylase	protein-coding	0.110000	0.696517	
mm_27989.1	chr3	82093621	82093821	-	1	NA	NA	NA	12588	NR_105977	102466991		NR_105977	ENSMUSG00000098712	Mir7010	Gm28029|mmu-mir-7010	microRNA 7010	ncRNA	0.005000	0.368159	
mm_526.1	chr1	37660678	37660878	+	1	NA	NA	NA	59033	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.025000	0.462687	
mm_119276.1	chr14	34307837	34308037	+	1	NA	NA	NA	2566	NM_029389	75698	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	0.010000	0.477612	
mm_46859.1	chr5	113800284	113800484	-	1	NA	NA	NA	-32	NM_146162	231633	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0.035000	0.661692	
mm_104760.1	chr11	98477112	98477312	-	1	NA	NA	NA	30378	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.020000	0.547264	
mm_163503.1	chr12	112853043	112853243	-	1	NA	NA	NA	7773	NM_019925	56696	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.025000	0.542289	
mm_143589.1	chr17	74459053	74459253	-	1	NA	NA	NA	-45	NM_001033367	268973	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.010000	0.383085	
mm_128533.1	chr15	54853271	54853471	-	1	NA	NA	NA	66775	NM_015744	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.005000	0.407960	65(AGCTATAAAGGG,-,0.00)
mm_165249.1	chr2	70476081	70476281	+	1	NA	NA	NA	1258	NM_022435	64406	Mm.423397	NM_022435	ENSMUSG00000075304	Sp5	-	trans-acting transcription factor 5	protein-coding	0.090000	0.706468	
mm_63225.1	chr7	126395452	126395652	+	1	NA	NA	NA	1185	NM_010900	18020	Mm.1389	NM_010900	ENSMUSG00000030722	Nfatc2ip	D7Ertd304e|NIP45	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein	protein-coding	0.010000	0.447761	
mm_60625.1	chr7	44708694	44708894	+	1	NA	NA	NA	51	NM_029317	75510	Mm.273301	NM_029317	ENSMUSG00000066500	Izumo2	1700023D19Rik	IZUMO family member 2	protein-coding	0.040000	0.636816	
mm_37097.1	chr4	116611964	116612164	-	1	NA	NA	NA	-14434	NR_029450	654318	Mm.255685	NR_029450	ENSMUSG00000085408	C530005A16Rik	D930044c15rik	RIKEN cDNA C530005A16 gene	ncRNA	0.005000	0.328358	
mm_6883.1	chr1	84695458	84695658	-	1	NA	NA	NA	-281	NR_039588	100628595		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0.095000	0.711443	
mm_72973.1	chr8	92887308	92887508	+	1	NA	NA	NA	-13987	NM_027112	69543	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	0.015000	0.318408	
mm_136960.1	chr17	15499869	15500069	+	1	NA	NA	NA	81	NM_013684	21374	Mm.244820	NM_013684	ENSMUSG00000014767	Tbp	GTF2D1|Gtf2d|SCA17|TFIID	TATA box binding protein	protein-coding	0.085000	0.557214	
mm_166073.1	chr4	135898548	135898748	+	1	NA	NA	NA	3459	NM_009924	12802	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0.030000	0.557214	77(GGACTTAAAAGC,-,0.00)
mm_103817.1	chr11	83003533	83003733	-	1	NA	NA	NA	-11803	NM_172796	237886	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.015000	0.437811	
mm_116295.1	chr13	36117272	36117472	-	1	NA	NA	NA	-15	NM_201358	380840	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	0.110000	0.661692	
mm_29257.1	chr3	107219683	107219883	-	1	NA	NA	NA	1949	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.542289	
mm_8573.1	chr1	155741924	155742124	-	1	NA	NA	NA	3	NM_010712	16872	Mm.103624	NM_010712	ENSMUSG00000026468	Lhx4	A330062J17Rik|Gsh-4|Gsh4	LIM homeobox protein 4	protein-coding	0.050000	0.572139	
mm_27256.1	chr3	37232535	37232735	-	1	NA	NA	NA	1	NM_001291041	60505	Mm.157689	NM_021782	ENSMUSG00000027718	Il21	IL-21	interleukin 21	protein-coding	0.010000	0.517413	
mm_157100.1	chrX	9437472	9437672	-	1	NA	NA	NA	31752	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.348259	
mm_47873.1	chr5	134678122	134678322	-	1	NA	NA	NA	26	NM_001305875	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.015000	0.646766	
mm_107127.1	chr12	20312139	20312339	+	1	NA	NA	NA	503540	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.115000	0.741294	
mm_61784.1	chr7	83755989	83756189	+	1	NA	NA	NA	-20599	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.020000	0.452736	-93(AGCCTTTAAAAG,-,0.00),-92(GCCTTTAAAAGA,-,0.00),-91(CCTTTAAAAGAT,+,0.00)
mm_91414.1	chr10	31609625	31609825	-	1	NA	NA	NA	0	NM_001146349	268291	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.075000	0.676617	
mm_79009.1	chr9	45476239	45476439	+	1	NA	NA	NA	-45107	NR_040732	74602	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.010000	0.348259	-34(GACCTTAAATGC,-,0.00),13(GCATATATACCC,+,0.00)
mm_52012.1	chr6	94130554	94130754	+	1	NA	NA	NA	106788	NR_130996	78178	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0.010000	0.517413	
mm_10788.1	chr2	24347383	24347583	+	1	NA	NA	NA	2112	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.000000	0.442786	
mm_16169.1	chr2	172546096	172546296	+	1	NA	NA	NA	-3397	NM_009335	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding	0.045000	0.597015	
mm_36933.1	chr4	108552316	108552516	-	1	NA	NA	NA	26920	NM_172697	230596	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	0.005000	0.343284	35(TCTTTTATGGTG,+,0.00)
mm_1564.1	chr1	74155578	74155778	+	1	NA	NA	NA	1684	NM_009909	12765	Mm.234466	NM_009909	ENSMUSG00000026180	Cxcr2	CD128|CDw128|Cmkar2|Gpcr16|IL-8Rh|IL-8rb|IL8RA|Il8rb|mIL-8RH	chemokine (C-X-C motif) receptor 2	protein-coding	0.010000	0.512438	
mm_49012.1	chr6	4758390	4758590	+	1	NA	NA	NA	11184	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.005000	0.348259	
mm_71292.1	chr8	41141628	41141828	+	1	NA	NA	NA	-8002	NM_001005863	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.015000	0.422886	
mm_63558.1	chr7	128082538	128082738	+	1	NA	NA	NA	19998	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.005000	0.482587	
mm_99732.1	chr11	106301374	106301574	+	1	NA	NA	NA	422	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.025000	0.587065	
mm_156309.1	chrX	136838015	136838215	+	1	NA	NA	NA	15369	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.363184	
mm_101060.1	chr11	9039522	9039722	-	1	NA	NA	NA	-31	NM_001290519	194974	Mm.79210	NM_177576	ENSMUSG00000040985	Sun3	Sunc1	Sad1 and UNC84 domain containing 3	protein-coding	0.005000	0.407960	
mm_157279.1	chrX	20617496	20617696	-	1	NA	NA	NA	-32	NM_019435	104130	Mm.30084	NM_019435	ENSMUSG00000031059	Ndufb11	D5Bwg0566e|D5Bwg0577e|NP15.6|Np15	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11	protein-coding	0.020000	0.477612	
mm_44280.1	chr5	7186325	7186525	-	1	NA	NA	NA	-117739	NM_027603	70920	Mm.158494	NM_027603	ENSMUSG00000040514	4921511H03Rik	-	RIKEN cDNA 4921511H03 gene	protein-coding	0.000000	0.333333	
mm_93289.1	chr10	96332851	96333051	-	1	NA	NA	NA	106744	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.025000	0.492537	
mm_72339.1	chr8	79304159	79304359	+	1	NA	NA	NA	9181	NR_045823	234479	Mm.238026	NR_045822		Gm4890	A630049P17	predicted gene 4890	ncRNA	0.010000	0.378109	
mm_47181.1	chr5	120753594	120753794	-	1	NA	NA	NA	-3846	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.005000	0.517413	
mm_21706.1	chr2	164585357	164585557	-	1	NA	NA	NA	-10	NM_001033240	209351	Mm.293365	NM_001033240	ENSMUSG00000074595	Wfdc6a	Gm122	WAP four-disulfide core domain 6A	protein-coding	0.010000	0.457711	
mm_42418.1	chr5	115301043	115301243	+	1	NA	NA	NA	23	NR_131932	102639268	Mm.319998	NR_131932		Gm13830	OTTMUSG00000014646	predicted gene 13830	ncRNA	0.100000	0.671642	
mm_166384.1	chr5	131586419	131586619	+	1	NA	NA	NA	-278997	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.015000	0.542289	
mm_90411.1	chr10	127420730	127420930	+	1	NA	NA	NA	-37	NM_027900	71750	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.010000	0.457711	
mm_93641.1	chr10	117292767	117292967	-	1	NA	NA	NA	1	NM_013590	17110	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0.015000	0.537313	-31(GCTTAAATAGCA,+,0.00)
mm_64683.1	chr7	4512740	4512940	-	1	NA	NA	NA	3135	NM_001277903	21955	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0.005000	0.373134	
mm_156213.1	chrX	134685133	134685333	+	1	NA	NA	NA	1229	NR_045454	77983	Mm.153204	NR_045454	ENSMUSG00000087024	B230119M05Rik	-	RIKEN cDNA B230119M05 gene	ncRNA	0.010000	0.477612	
mm_96024.1	chr11	59548470	59548670	+	1	NA	NA	NA	5884	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.030000	0.557214	
mm_52459.1	chr6	113697017	113697217	+	1	NA	NA	NA	67	NM_001033463	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.145000	0.756219	
mm_26611.1	chr3	152290229	152290429	+	1	NA	NA	NA	-24009	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.040000	0.641791	
mm_152604.1	chr19	11818330	11818530	-	1	NA	NA	NA	973	NM_001286543	20908	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.040000	0.611940	
mm_86624.1	chr10	13966176	13966376	+	1	NA	NA	NA	-103	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.130000	0.761194	
mm_106702.1	chr12	3643865	3644065	+	1	NA	NA	NA	70924	NM_007886	13528	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.005000	0.462687	-28(GTTTTTAGACAC,+,0.00)
mm_133688.1	chr16	92498608	92498808	+	1	NA	NA	NA	561	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	0.125000	0.761194	
mm_135377.1	chr16	44138942	44139142	-	1	NA	NA	NA	-23	NM_007508	11964	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.065000	0.611940	
mm_80867.1	chr9	98515423	98515623	+	1	NA	NA	NA	24986	NM_009034	19660	Mm.12825	NM_009034	ENSMUSG00000032454	Rbp2	Crbp-2|CrbpII|Rbp-2	retinol binding protein 2, cellular	protein-coding	0.005000	0.452736	
mm_148331.1	chr18	84086652	84086852	-	1	NA	NA	NA	-190	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.045000	0.517413	
mm_89479.1	chr10	93554782	93554982	+	1	NA	NA	NA	14250	NM_175488	237465	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	0.030000	0.522388	
mm_162389.1	chr1	75449624	75449824	+	1	NA	NA	NA	-786	NM_183022	241118	Mm.110790	NM_183022	ENSMUSG00000033007	Asic4	Accn4|BNAC4	acid-sensing (proton-gated) ion channel family member 4	protein-coding	0.015000	0.522388	
mm_71841.1	chr8	68904743	68904943	+	1	NA	NA	NA	24288	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.000000	0.368159	
mm_162160.1	chrX	93654756	93654956	+	1	NA	NA	NA	-7	NM_177546	236899	Mm.166467	NM_177546	ENSMUSG00000035246	Pcyt1b	AW045697|CTTbeta	phosphate cytidylyltransferase 1, choline, beta isoform	protein-coding	0.005000	0.477612	
mm_147898.1	chr18	65328536	65328736	-	1	NA	NA	NA	65252	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.005000	0.512438	
mm_126344.1	chr15	79901093	79901293	+	1	NA	NA	NA	6170	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.015000	0.447761	
mm_131007.1	chr15	103562771	103562971	-	1	NA	NA	NA	2210	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.010000	0.442786	
mm_99905.1	chr11	109717175	109717375	+	1	NA	NA	NA	4981	NM_153782	208659	Mm.208662	NM_153782	ENSMUSG00000020614	Fam20a	AI606893	family with sequence similarity 20, member A	protein-coding	0.025000	0.567164	
mm_107080.1	chr12	17033612	17033812	+	1	NA	NA	NA	-21985	NM_001201333	73667	Mm.159048	NM_001201332	ENSMUSG00000071398	2410004P03Rik	-	RIKEN cDNA 2410004P03 gene	protein-coding	0.030000	0.567164	
mm_20182.1	chr2	122598803	122599003	-	1	NA	NA	NA	12374	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.010000	0.467662	
mm_48161.1	chr5	137152706	137152906	-	1	NA	NA	NA	-36599	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.482587	
mm_159081.1	chr2	26441821	26442021	-	1	NA	NA	NA	3295	NM_153125	227648	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	0.025000	0.562189	83(CTTTTAATAGAC,+,0.00)
mm_156022.1	chrX	107148926	107149126	+	1	NA	NA	NA	99	NM_001122596	213438	Mm.265244	NM_175442	ENSMUSG00000054293	A630033H20Rik	AI662791|P2ry10	RIKEN cDNA A630033H20 gene	protein-coding	0.015000	0.388060	
mm_135788.1	chr16	57163666	57163866	-	1	NA	NA	NA	3566	NM_023175	52633	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.000000	0.338308	
mm_122286.1	chr14	34503206	34503406	-	1	NA	NA	NA	-760	NM_009758	12166	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK3|AU045487|BMPR-IA|Bmpr	bone morphogenetic protein receptor, type 1A	protein-coding	0.110000	0.631841	-83(GTATTTATAGTC,+,0.00)
mm_141929.1	chr17	35027787	35027987	-	1	NA	NA	NA	129	NR_028258	78376	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	0.025000	0.616915	
mm_84764.1	chr9	75610989	75611189	-	1	NA	NA	NA	236	NM_016711	50876	Mm.291880	NM_016711	ENSMUSG00000032186	Tmod2	N-Tmod|NTMOD	tropomodulin 2	protein-coding	0.110000	0.736318	
mm_48733.1	chr5	147557686	147557886	-	1	NA	NA	NA	127206	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.010000	0.487562	48(GGCTAGAAAAAG,-,0.00)
mm_125528.1	chr15	57912151	57912351	+	1	NA	NA	NA	52	NM_001167679	210544	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0.115000	0.701493	
mm_71864.1	chr8	69088675	69088875	+	1	NA	NA	NA	39	NM_007509	11966	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0.135000	0.736318	
mm_22973.1	chr3	32708669	32708869	+	1	NA	NA	NA	223	NM_019673	56456	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0.100000	0.636816	
mm_138794.1	chr17	37492306	37492506	+	1	NA	NA	NA	-62	NM_146328	258325	Mm.484339	NM_146328	ENSMUSG00000090894	Olfr110	MOR249-2	olfactory receptor 110	protein-coding	0.000000	0.417910	40(GCTCTTAGAGTC,+,0.00)
mm_107388.1	chr12	33302156	33302356	+	1	NA	NA	NA	-259	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.025000	0.497512	
mm_73963.1	chr8	120488116	120488316	+	1	NA	NA	NA	-650	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.045000	0.631841	
mm_11528.1	chr2	32626757	32626957	+	1	NA	NA	NA	1420	NM_001198791	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.000000	0.527363	
mm_111823.1	chr12	106716230	106716430	-	1	NA	NA	NA	-6	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.025000	0.487562	
mm_58990.1	chr7	19094627	19094827	+	1	NA	NA	NA	183	NM_011383	20475	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0.140000	0.781095	
mm_75391.1	chr8	45975153	45975353	-	1	NA	NA	NA	-1	NM_001033148	69479	Mm.158282	NM_001033148	ENSMUSG00000071103	1700029J07Rik	-	RIKEN cDNA 1700029J07 gene	protein-coding	0.135000	0.676617	
mm_97211.1	chr11	75620603	75620803	+	1	NA	NA	NA	-10317	NM_008916	19062	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.020000	0.542289	
mm_115092.1	chr13	102706806	102707006	+	1	NA	NA	NA	13348	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.005000	0.452736	
mm_39642.1	chr5	24586710	24586910	+	1	NA	NA	NA	60	NM_133913	100910	Mm.140672	NM_133913	ENSMUSG00000038181	Chpf2	2010209O12Rik|AW060945|mKIAA1402|mir-671	chondroitin polymerizing factor 2	protein-coding	0.085000	0.696517	
mm_113870.1	chr13	48662787	48662987	+	1	NA	NA	NA	-149	NM_007526	12022	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	0.155000	0.850746	
mm_137489.1	chr17	26948528	26948728	+	1	NA	NA	NA	-509	NR_037244	100526534		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0.165000	0.800995	
mm_143018.1	chr17	56476412	56476612	-	1	NA	NA	NA	-32	NM_011218	19280	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.110000	0.731343	
mm_166962.1	chr7	44480437	44480637	+	1	NA	NA	NA	-3980	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.492537	
mm_53615.1	chr6	140041436	140041636	+	1	NA	NA	NA	11	NM_007605	12344	Mm.12817	NM_007605	ENSMUSG00000041791	Capza3	510-4|Cappa3|Gsg3|Tex8|repro32	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding	0.015000	0.452736	
mm_143767.1	chr17	81647760	81647960	-	1	NA	NA	NA	90527	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.020000	0.472637	
mm_10310.1	chr2	11172127	11172327	+	1	NA	NA	NA	-155	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.110000	0.706468	
mm_10881.1	chr2	25242973	25243173	+	1	NA	NA	NA	144	NM_176834	68846	Mm.24777	NM_176834	ENSMUSG00000044628	Rnf208	1110061N23Rik	ring finger protein 208	protein-coding	0.020000	0.641791	
mm_5636.1	chr1	40437337	40437537	-	1	NA	NA	NA	-2192	NM_001025602	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.010000	0.462687	
mm_42782.1	chr5	121452072	121452272	+	1	NA	NA	NA	302	NM_026129	67397	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	0.090000	0.676617	
mm_111159.1	chr12	83487636	83487836	-	1	NA	NA	NA	0	NM_001267626	70127	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0.065000	0.512438	
mm_97981.1	chr11	83885399	83885599	+	1	NA	NA	NA	32539	NM_001291269	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.015000	0.497512	
mm_157069.1	chrX	8193273	8193473	-	1	NA	NA	NA	139	NM_007898	13595	Mm.27183	NM_007898	ENSMUSG00000031168	Ebp	AI255399|Pabp|SI|Td|mSI	phenylalkylamine Ca2+ antagonist (emopamil) binding protein	protein-coding	0.020000	0.472637	-26(GCTTTTAAGAAC,+,0.00)
mm_84919.1	chr9	80067673	80067873	-	1	NA	NA	NA	870	NM_146003	215351	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.155000	0.810945	
mm_90308.1	chr10	126997307	126997507	+	1	NA	NA	NA	-1033	NR_030259	723882		NR_030259	ENSMUSG00000072837	Mir546	Mirn546|mmu-mir-546	microRNA 546	ncRNA	0.025000	0.567164	
mm_142176.1	chr17	36263391	36263591	-	1	NA	NA	NA	-5645	NM_026308	67676	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0.010000	0.343284	
mm_137872.1	chr17	31433028	31433228	+	1	NA	NA	NA	46894	NM_001163748	18585	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	0.005000	0.557214	
mm_118985.1	chr14	28504545	28504745	+	1	NA	NA	NA	-828	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.035000	0.567164	
mm_136973.1	chr17	15751216	15751416	+	1	NA	NA	NA	46349	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.000000	0.248756	-74(ACCTATTAAGGC,-,0.00)
mm_11831.1	chr2	45106103	45106303	+	1	NA	NA	NA	4074	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.015000	0.402985	
mm_82387.1	chr9	14662945	14663145	-	1	NA	NA	NA	-48045	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.020000	0.522388	43(CTCTTTTTAAAC,-,0.00),45(CTTTTTAAACTC,+,0.00),78(ACCTTTTAAAAC,-,0.00),79(CCTTTTAAAACT,+,0.00)
mm_113196.1	chr13	24943425	24943625	+	1	NA	NA	NA	373	NM_008156	14756	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0.035000	0.487562	
mm_169702.1	chr15	75086785	75086985	+	1	NA	NA	NA	25064	NM_001099217	100041546	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0.010000	0.482587	
mm_163753.1	chr13	119790602	119790802	-	1	NA	NA	NA	30	NM_001302548	72465	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0.125000	0.810945	
mm_28224.1	chr3	88453295	88453495	-	1	NA	NA	NA	2366	NM_013658	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.000000	0.542289	
mm_136771.1	chr17	9030517	9030717	+	1	NA	NA	NA	42284	NM_001347544	66931	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	0.005000	0.333333	
mm_75440.1	chr8	47413703	47413903	-	1	NA	NA	NA	-61455	NM_175162	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.110000	0.666667	
mm_60141.1	chr7	38183092	38183292	+	1	NA	NA	NA	-25	NM_001085385	72244	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0.015000	0.512438	
mm_59667.1	chr7	28376444	28376644	+	1	NA	NA	NA	2684	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.075000	0.671642	
mm_162110.1	chrX	50942823	50943023	-	1	NA	NA	NA	-213	NM_001190332	385354	Mm.393050	NM_001190332	ENSMUSG00000036131	Frmd7	EG665849|Gm1533	FERM domain containing 7	protein-coding	0.035000	0.567164	
mm_111171.1	chr12	83631922	83632122	-	1	NA	NA	NA	-212	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.045000	0.487562	
mm_38698.1	chr4	145214501	145214701	-	1	NA	NA	NA	-19596	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.020000	0.547264	
mm_108153.1	chr12	76324740	76324940	+	1	NA	NA	NA	-51	NM_001101471	238276	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.110000	0.756219	
mm_57398.1	chr6	124863648	124863848	-	1	NA	NA	NA	169	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.095000	0.746269	
mm_149421.1	chr19	11443485	11443685	+	1	NA	NA	NA	27	NM_021718	60361	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	0.000000	0.427861	
mm_98024.1	chr11	85170980	85171180	+	1	NA	NA	NA	-16	NM_028589	73634	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0.005000	0.572139	
mm_100204.1	chr11	116843564	116843764	+	1	NA	NA	NA	149	NM_028865	74319	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	0.105000	0.721393	
mm_102226.1	chr11	54909991	54910191	-	1	NA	NA	NA	7237	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.015000	0.582090	
mm_99841.1	chr11	109346781	109346981	+	1	NA	NA	NA	14	NR_027883	67927	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	0.010000	0.552239	
mm_29420.1	chr3	108976458	108976658	-	1	NA	NA	NA	36001	NM_001078646	66715	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0.000000	0.323383	
mm_127693.1	chr15	102990387	102990587	+	1	NA	NA	NA	-52	NM_010466	15426	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.100000	0.587065	
mm_76388.1	chr8	84842699	84842899	-	1	NA	NA	NA	-2134	NM_009010	19358	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.010000	0.457711	
mm_29419.1	chr3	108976395	108976595	-	1	NA	NA	NA	35938	NM_001078646	66715	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0.000000	0.293532	
mm_45961.1	chr5	90464081	90464281	-	1	NA	NA	NA	3311	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.467662	
mm_101232.1	chr11	20332632	20332832	-	1	NA	NA	NA	-19	NM_018861	55963	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.070000	0.636816	
mm_6382.1	chr1	72780716	72780916	-	1	NA	NA	NA	-43664	NM_008342	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.025000	0.502488	
mm_59037.1	chr7	19332864	19333064	+	1	NA	NA	NA	-12107	NM_001127324	13870	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.145000	0.711443	-23(CCTTATCTGGCG,+,0.00)
mm_3972.1	chr1	164192966	164193166	+	1	NA	NA	NA	-40849	NR_037987	100503816	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	0.005000	0.442786	
mm_155009.1	chrX	41401079	41401279	+	1	NA	NA	NA	-122	NM_016886	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding	0.015000	0.537313	
mm_113256.1	chr13	28021317	28021517	+	1	NA	NA	NA	5194	NM_011165	19110	Mm.18607	NM_011165	ENSMUSG00000005891	Prl4a1	AA409771|Ghd23|PLP-A|Prlpa	prolactin family 4, subfamily a, member 1	protein-coding	0.000000	0.457711	
mm_164374.1	chr16	25799544	25799744	+	1	NA	NA	NA	-2272	NM_001127263	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.000000	0.373134	
mm_147870.1	chr18	64479302	64479502	-	1	NA	NA	NA	9664	NM_007998	14151	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0.005000	0.402985	
mm_14369.1	chr2	129629912	129630112	+	1	NA	NA	NA	36843	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.020000	0.527363	-93(TCTTTTAGATCC,+,0.00)
mm_4228.1	chr1	171356468	171356668	+	1	NA	NA	NA	4230	NM_001033039	68874	Mm.10756	NM_001033039	ENSMUSG00000045259	Klhdc9	1190002J23Rik|AA087357|ESTM31	kelch domain containing 9	protein-coding	0.020000	0.502488	
mm_166801.1	chr7	3981711	3981911	+	1	NA	NA	NA	-66310	NR_028115	18726	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	0.010000	0.427861	
mm_52663.1	chr6	117900358	117900558	+	1	NA	NA	NA	118	NM_001166432	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.025000	0.492537	
mm_29103.1	chr3	104818131	104818331	-	1	NA	NA	NA	74	NM_008619	17454	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0.045000	0.606965	
mm_54584.1	chr6	38125416	38125616	-	1	NA	NA	NA	-930	NM_080467	140494	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	0.000000	0.402985	87(AGGTATAAAAGA,-,0.00)
mm_112635.1	chr13	16011835	16012035	+	1	NA	NA	NA	84	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.075000	0.646766	
mm_27849.1	chr3	79156597	79156797	-	1	NA	NA	NA	-10822	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.328358	
mm_91956.1	chr10	61100600	61100800	-	1	NA	NA	NA	11369	NM_025273	13180	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.010000	0.417910	
mm_142562.1	chr17	46645675	46645875	-	1	NA	NA	NA	-446	NM_001316742	27398	Mm.391007	NM_025302	ENSMUSG00000002767	Mrpl2	CGI-22|L2mt|MRP-L14|MRP-L2|Rpml14	mitochondrial ribosomal protein L2	protein-coding	0.055000	0.606965	
mm_72502.1	chr8	83740537	83740737	+	1	NA	NA	NA	674	NM_001163029	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.005000	0.427861	
mm_69847.1	chr7	141413979	141414179	-	1	NA	NA	NA	46	NM_172116	213350	Mm.290953	NM_172116	ENSMUSG00000051007	Pddc1	BC023835|D230016J19Rik	Parkinson disease 7 domain containing 1	protein-coding	0.105000	0.711443	
mm_61092.1	chr7	51725150	51725350	+	1	NA	NA	NA	103420	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.000000	0.432836	
mm_136904.1	chr17	13016184	13016384	+	1	NA	NA	NA	8445	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.010000	0.432836	
mm_69999.1	chr7	142386577	142386777	-	1	NA	NA	NA	1193	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.000000	0.537313	
mm_67550.1	chr7	81498180	81498380	-	1	NA	NA	NA	50	NM_183143	210321	Mm.99511	NM_183143	ENSMUSG00000061877	BC048679	-	cDNA sequence BC048679	protein-coding	0.015000	0.532338	
mm_20910.1	chr2	150600261	150600461	-	1	NA	NA	NA	8162	NM_027977	71881	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	0.010000	0.512438	
mm_15597.1	chr2	160645919	160646119	+	1	NA	NA	NA	122	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.125000	0.661692	-72(CCATTTAAAAGC,+,0.00),-72(CCATTTAAAAGC,-,0.00)
mm_146960.1	chr18	33213742	33213942	-	1	NA	NA	NA	20	NM_001347624	170459	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	0.070000	0.631841	
mm_120715.1	chr14	72710009	72710209	+	1	NA	NA	NA	-106	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.165000	0.776119	
mm_172229.1	chr6	67494680	67494880	+	1	NA	NA	NA	-2925	NM_144548	209590	Mm.221227	NM_144548	ENSMUSG00000049093	Il23r	IL-23R	interleukin 23 receptor	protein-coding	0.070000	0.666667	
mm_8830.1	chr1	162571272	162571472	-	1	NA	NA	NA	544	NM_001347125	53330	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e	vesicle-associated membrane protein 4	protein-coding	0.040000	0.447761	
mm_1954.1	chr1	86357163	86357363	+	1	NA	NA	NA	-936	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.015000	0.502488	
mm_100726.1	chr11	3927420	3927620	-	1	NA	NA	NA	4441	NM_001130459	21452	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	0.030000	0.532338	
mm_159080.1	chr2	26369451	26369651	-	1	NA	NA	NA	-10004	NM_001037747	332579	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	0.035000	0.601990	
mm_142126.1	chr17	35897256	35897456	-	1	NA	NA	NA	22	NM_001033630	69662	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	0.130000	0.736318	
mm_68753.1	chr7	121068219	121068419	-	1	NA	NA	NA	6211	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.015000	0.452736	
mm_351.1	chr1	31253150	31253350	+	1	NA	NA	NA	-11597	NR_015347	226957	Mm.25966	NR_015347		Gm4850	EG226957	THO complex 4 pseudogene	pseudo	0.000000	0.268657	
mm_119471.1	chr14	47298201	47298401	+	1	NA	NA	NA	-13	NM_178684	218975	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	0.110000	0.696517	
mm_53243.1	chr6	127561228	127561428	+	1	NA	NA	NA	-16647	NM_001033464	381812	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0.085000	0.671642	
mm_110527.1	chr12	54986206	54986406	-	1	NA	NA	NA	30	NM_013815	217578	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.125000	0.701493	
mm_109029.1	chr12	104077844	104078044	+	1	NA	NA	NA	-15	NR_002861	321018	Mm.297023	NR_002861		Serpina4-ps1	KALps|Klst	serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1	pseudo	0.005000	0.487562	
mm_160416.1	chr8	83541101	83541301	+	1	NA	NA	NA	108	NM_146270	258267	Mm.377401	NM_146270	ENSMUSG00000047286	Olfr370	MOR267-16|MOR26716	olfactory receptor 370	protein-coding	0.010000	0.507463	
mm_763.1	chr1	43983432	43983632	+	1	NA	NA	NA	36474	NM_001013799	433294	Mm.123621	NM_001013799	ENSMUSG00000047343	Mettl21c	A530098C11Rik	methyltransferase like 21C	protein-coding	0.005000	0.373134	
mm_10284.1	chr2	10153455	10153655	+	1	NA	NA	NA	12	NM_172471	209378	Mm.313876	NM_172471	ENSMUSG00000025780	Itih5	4631408O11Rik|5430408M01Rik|E130106B02	inter-alpha (globulin) inhibitor H5	protein-coding	0.065000	0.636816	-33(GGGCATAAAGGG,-,0.00)
mm_122084.1	chr14	30618034	30618234	-	1	NA	NA	NA	-7824	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.005000	0.467662	33(GGGCATATAAGC,-,0.00)
mm_172302.1	chr7	104288208	104288408	+	1	NA	NA	NA	-202	NM_001310602	667823	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	0.005000	0.517413	
mm_118774.1	chr14	22829271	22829471	+	1	NA	NA	NA	265200	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA	0.000000	0.333333	
mm_67628.1	chr7	84151920	84152120	-	1	NA	NA	NA	-127	NM_133722	70178	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.180000	0.835821	
mm_41892.1	chr5	105518631	105518831	+	1	NA	NA	NA	-740	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.030000	0.547264	71(GGGTCTTAAGGC,-,0.00)
mm_113533.1	chr13	37841534	37841734	+	1	NA	NA	NA	14241	NM_001039188	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.010000	0.467662	
mm_138231.1	chr17	34377069	34377269	+	1	NA	NA	NA	37	NM_001111094	100038862	Mm.440426	NM_201405	ENSMUSG00000062638	Btnl1	Btnl3|Gm316|Gm33	butyrophilin-like 1	protein-coding	0.005000	0.502488	
mm_118447.1	chr14	8214058	8214258	+	1	NA	NA	NA	77	NM_027782	71393	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0.190000	0.805970	
mm_76324.1	chr8	84705069	84705269	-	1	NA	NA	NA	3712	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.065000	0.631841	
mm_146552.1	chr18	6220892	6221092	-	1	NA	NA	NA	20532	NM_008448	16573	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.005000	0.442786	
mm_145842.1	chr18	65447590	65447790	+	1	NA	NA	NA	16693	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.412935	
mm_169479.1	chr14	70723377	70723577	-	1	NA	NA	NA	43151	NM_023045	65246	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|mKIAA0745	exportin 7	protein-coding	0.015000	0.437811	
mm_149993.1	chr19	29252472	29252672	+	1	NA	NA	NA	769	NM_008413	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.035000	0.527363	
mm_70137.1	chr7	143273673	143273873	-	1	NA	NA	NA	22774	NR_001461	63830	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.005000	0.462687	
mm_57289.1	chr6	124433377	124433577	-	1	NA	NA	NA	-18410	NM_001277805	19305	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1R|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0.025000	0.527363	
mm_78108.1	chr9	20581252	20581452	+	1	NA	NA	NA	24	NM_172919	244721	Mm.86627	NM_172919	ENSMUSG00000058192	Zfp846	2210010B09Rik|9130221F13|Znf846	zinc finger protein 846	protein-coding	0.075000	0.597015	
mm_59751.1	chr7	28821939	28822139	+	1	NA	NA	NA	-3299	NM_016772	51798	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.000000	0.343284	9(CCTTTTAAATGC,+,0.00)
mm_34062.1	chr4	138454216	138454416	+	1	NA	NA	NA	-832	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.105000	0.756219	
mm_39611.1	chr5	24164915	24165115	+	1	NA	NA	NA	52	NM_001346582	231042	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	0.095000	0.651741	
mm_35623.1	chr4	43454485	43454685	-	1	NA	NA	NA	41	NM_001110320	12517	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.035000	0.547264	
mm_45622.1	chr5	75978355	75978555	-	1	NA	NA	NA	-27	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.075000	0.646766	
mm_143349.1	chr17	67061409	67061609	-	1	NA	NA	NA	-35274	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.010000	0.432836	
mm_134561.1	chr16	20302235	20302435	-	1	NA	NA	NA	27	NM_001005767	381038	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	0.080000	0.611940	
mm_80543.1	chr9	81631839	81632039	+	1	NA	NA	NA	9	NR_040393	319405	Mm.246494	NR_040393	ENSMUSG00000097466	D430036J16Rik	-	RIKEN cDNA D430036J16 gene	ncRNA	0.055000	0.542289	
mm_147873.1	chr18	64488931	64489131	-	1	NA	NA	NA	35	NM_007998	14151	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0.135000	0.776119	
mm_138745.1	chr17	37003585	37003785	+	1	NA	NA	NA	19	NR_033137	22715	Mm.305561	NM_009559	ENSMUSG00000036036	Zfp57	G19|Zfp-57	zinc finger protein 57	protein-coding	0.005000	0.407960	
mm_100956.1	chr11	6625951	6626151	-	1	NA	NA	NA	16	NM_001130457	21379	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	0.115000	0.691542	
mm_47206.1	chr5	120941787	120941987	-	1	NA	NA	NA	27069	NM_133893	100535	Mm.247620	NM_133893	ENSMUSG00000032623	Oas1d	AA536864|C85127|oasl8	2'-5' oligoadenylate synthetase 1D	protein-coding	0.000000	0.472637	
mm_26551.1	chr3	146404724	146404924	+	1	NA	NA	NA	182	NM_138744	99167	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	0.160000	0.786070	
mm_118357.1	chr13	115101466	115101666	-	1	NA	NA	NA	398	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.075000	0.666667	
mm_63425.1	chr7	127475022	127475222	+	1	NA	NA	NA	3508	NM_145589	233895	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.040000	0.547264	
mm_34236.1	chr4	141147841	141148041	+	1	NA	NA	NA	19	NM_172518	213499	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0.185000	0.766169	
mm_152758.1	chr19	20373622	20373822	-	1	NA	NA	NA	16949	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.005000	0.398010	
mm_92007.1	chr10	62337293	62337493	-	1	NA	NA	NA	3028	NM_001146100	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.000000	0.472637	
mm_146011.1	chr18	69346071	69346271	+	1	NA	NA	NA	450	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.130000	0.706468	
mm_108848.1	chr12	98271703	98271903	+	1	NA	NA	NA	3168	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.005000	0.467662	
mm_32124.1	chr4	99033137	99033337	+	1	NA	NA	NA	2283	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.000000	0.417910	
mm_98712.1	chr11	96314561	96314761	+	1	NA	NA	NA	-2504	NR_029784	723893		NR_029784	ENSMUSG00000065519	Mir10a	Mirn10a|miR-10a|mmu-mir-10a	microRNA 10a	ncRNA	0.055000	0.422886	
mm_31564.1	chr4	57567952	57568152	+	1	NA	NA	NA	-196	NM_001304544	677884	Mm.331630	NM_001304544	ENSMUSG00000089945	Pakap	AF064781|Gm20459|Palm2-Akap2|Palm2Akap2|Palm2akap2	paralemmin A kinase anchor protein	protein-coding	0.150000	0.771144	
mm_54867.1	chr6	42597594	42597794	-	1	NA	NA	NA	-322	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.015000	0.407960	
mm_6497.1	chr1	74281030	74281230	-	1	NA	NA	NA	2530	NM_174985	227289	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.020000	0.542289	
mm_122619.1	chr14	51145359	51145559	-	1	NA	NA	NA	1308	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.005000	0.492537	
mm_99462.1	chr11	102435188	102435388	+	1	NA	NA	NA	4966	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.025000	0.557214	
mm_67581.1	chr7	82866981	82867181	-	1	NA	NA	NA	-252	NM_175366	108797	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0.140000	0.771144	
mm_20941.1	chr2	151432278	151432478	-	1	NA	NA	NA	71	NR_131976	100125594	Mm.381283	NR_131976	ENSMUSG00000087495	LOC100125594	-	uncharacterized LOC100125594	ncRNA	0.030000	0.482587	
mm_5797.1	chr1	52155273	52155473	-	1	NA	NA	NA	35751	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.010000	0.358209	
mm_3475.1	chr1	150105295	150105495	+	1	NA	NA	NA	5364	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.015000	0.492537	
mm_26087.1	chr3	136696730	136696930	+	1	NA	NA	NA	26764	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.010000	0.333333	
mm_142430.1	chr17	45569681	45569881	-	1	NA	NA	NA	3480	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.030000	0.457711	
mm_19666.1	chr2	103303065	103303265	-	1	NA	NA	NA	31	NM_007914	13661	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding	0.020000	0.447761	
mm_61626.1	chr7	80220855	80221055	+	1	NA	NA	NA	11850	NM_001291276	23991	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0.015000	0.587065	
mm_21985.1	chr2	167577080	167577280	-	1	NA	NA	NA	38985	NM_011427	20613	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	0.015000	0.532338	44(TGCCTTTAAAGC,-,0.00),45(GCCTTTAAAGCT,+,0.00),46(CCTTTAAAGCTG,+,0.00)
mm_80292.1	chr9	73094730	73094930	+	1	NA	NA	NA	-7568	NM_025890	66991	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	0.050000	0.562189	
mm_136352.1	chr16	92697013	92697213	-	1	NA	NA	NA	216	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.025000	0.373134	
mm_82056.1	chr9	122682028	122682228	+	1	NA	NA	NA	-748	NR_029819	387156		NR_029819	ENSMUSG00000065414	Mir138-1	Mirn138|Mirn138-1|mir-138-1	microRNA 138-1	ncRNA	0.000000	0.388060	
mm_64602.1	chr7	3212531	3212731	-	1	NA	NA	NA	-5995	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.005000	0.457711	
mm_11802.1	chr2	43748739	43748939	+	1	NA	NA	NA	15	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.020000	0.398010	31(GTTTTAATAGCA,+,0.00)
mm_155070.1	chrX	43590841	43591041	+	1	NA	NA	NA	-48	NM_001195271	637093	Mm.368463	NM_001195271	ENSMUSG00000078320	Tex13c1	Gm362|Tex13c	TEX13 family member C1	protein-coding	0.005000	0.442786	
mm_108992.1	chr12	102899196	102899396	+	1	NA	NA	NA	-10	NM_001039049	75483	Mm.660	NM_001039049	ENSMUSG00000043319	Cox8c	1700007F21Rik|COX8-3|COXVIII-3	cytochrome c oxidase subunit VIIIc	protein-coding	0.055000	0.572139	
mm_112224.1	chr12	113430281	113430481	-	1	NA	NA	NA	-59184	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.482587	
mm_87840.1	chr10	60399704	60399904	+	1	NA	NA	NA	78	NM_001164374	100302688	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.010000	0.567164	
mm_166098.1	chr4	143450225	143450425	-	1	NA	NA	NA	-1	NM_001347238	242737	Mm.148643	NM_173773	ENSMUSG00000047799	Oog4	E330017M15	oogenesin 4	protein-coding	0.005000	0.522388	
mm_4958.1	chr1	191266807	191267007	+	1	NA	NA	NA	51211	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.025000	0.562189	
mm_100125.1	chr11	115911970	115912170	+	1	NA	NA	NA	53	NM_001162998	68528	Mm.441893	NM_001162998	ENSMUSG00000075420	Smim6	1110017F19Rik	small integral membrane protein 6	protein-coding	0.015000	0.567164	
mm_73795.1	chr8	117258003	117258203	+	1	NA	NA	NA	1084	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.025000	0.427861	
mm_139187.1	chr17	47595989	47596189	+	1	NA	NA	NA	2622	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.020000	0.597015	
mm_121783.1	chr14	19976703	19976903	-	1	NA	NA	NA	-110	NM_001285911	14702	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.015000	0.402985	
mm_157260.1	chrX	19161486	19161686	-	1	NA	NA	NA	-14615	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.000000	0.303483	
mm_64968.1	chr7	16615006	16615206	-	1	NA	NA	NA	-113	NM_172739	232906	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.150000	0.726368	
mm_169526.1	chr14	90301609	90301809	+	1	NA	NA	NA	174818	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA	0.040000	0.502488	-33(CTCTTTAAAGAG,+,0.00),-33(CTCTTTAAAGAG,-,0.00),-31(CTTTAAAGAGGG,+,0.00)
mm_83573.1	chr9	47474814	47475014	-	1	NA	NA	NA	-55256	NM_001310841	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.010000	0.522388	
mm_104418.1	chr11	94760814	94761014	-	1	NA	NA	NA	268	NM_001105561	217122	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086|OTTMUSG00000002043	predicted gene 11545	protein-coding	0.025000	0.567164	
mm_84042.1	chr9	57796476	57796676	-	1	NA	NA	NA	-30716	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.060000	0.666667	
mm_67800.1	chr7	98096320	98096520	-	1	NA	NA	NA	12828	NM_001256082	17921	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.015000	0.472637	
mm_49839.1	chr6	38109313	38109513	+	1	NA	NA	NA	60	NM_029921	77522	Mm.387207	NM_029921	ENSMUSG00000029829	Tmem213	D630002J15Rik	transmembrane protein 213	protein-coding	0.015000	0.597015	
mm_108055.1	chr12	73923004	73923204	+	1	NA	NA	NA	15237	NM_001313919	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.000000	0.293532	
mm_162916.1	chr10	120160277	120160477	+	1	NA	NA	NA	41160	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.020000	0.467662	
mm_47456.1	chr5	123621748	123621948	-	1	NA	NA	NA	-48833	NM_029929	77573	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0.020000	0.412935	
mm_161381.1	chr14	70659124	70659324	-	1	NA	NA	NA	-6140	NM_181345	328440	Mm.347749	NM_181345	ENSMUSG00000047911	Npm2	-	nucleophosmin/nucleoplasmin 2	protein-coding	0.065000	0.582090	
mm_48067.1	chr5	136581528	136581728	-	1	NA	NA	NA	-14138	NM_001291238	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.035000	0.467662	
mm_146332.1	chr18	81199905	81200105	+	1	NA	NA	NA	-213427	NM_178280	20689	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	sal-like 3 (Drosophila)	protein-coding	0.000000	0.472637	
mm_52365.1	chr6	112696679	112696879	+	1	NA	NA	NA	-109	NM_001167730	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.090000	0.552239	
mm_98437.1	chr11	94938419	94938619	+	1	NA	NA	NA	2295	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.030000	0.621891	
mm_171270.1	chr3	88772413	88772613	-	1	NA	NA	NA	86	NM_018804	229521	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0.045000	0.597015	
mm_158498.1	chrX	142384679	142384879	-	1	NA	NA	NA	5756	NM_001033600	50790	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	0.010000	0.388060	
mm_110129.1	chr12	26444623	26444823	-	1	NA	NA	NA	11729	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.010000	0.527363	
mm_1076.1	chr1	59482026	59482226	+	1	NA	NA	NA	-21	NM_008057	14369	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.105000	0.731343	
mm_90318.1	chr10	127063563	127063763	+	1	NA	NA	NA	60	NM_009870	12567	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	0.080000	0.671642	
mm_121966.1	chr14	25493372	25493572	-	1	NA	NA	NA	34287	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.030000	0.507463	
mm_135665.1	chr16	52407606	52407806	-	1	NA	NA	NA	45375	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.422886	
mm_62480.1	chr7	101871540	101871740	+	1	NA	NA	NA	-852	NM_001252552	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.015000	0.532338	
mm_149957.1	chr19	28892942	28893142	+	1	NA	NA	NA	57876	NM_009199	20510	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	0.005000	0.323383	
mm_127254.1	chr15	99702071	99702271	+	1	NA	NA	NA	-116	NM_031842	83797	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.110000	0.731343	
mm_79061.1	chr9	46230157	46230357	+	1	NA	NA	NA	1627	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.050000	0.601990	
mm_72867.1	chr8	88657935	88658135	+	1	NA	NA	NA	10688	NM_145857	257632	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0.000000	0.477612	
mm_61108.1	chr7	52678810	52679010	+	1	NA	NA	NA	-663194	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	0.005000	0.373134	
mm_127520.1	chr15	102028127	102028327	+	1	NA	NA	NA	11	NM_010664	16668	Mm.22479	NM_010664	ENSMUSG00000023043	Krt18	CK18|K18|Krt1-18	keratin 18	protein-coding	0.075000	0.656716	
mm_15332.1	chr2	155778578	155778778	+	1	NA	NA	NA	3336	NM_010808	17391	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	0.005000	0.532338	
mm_52867.1	chr6	122308894	122309094	+	1	NA	NA	NA	-16	NM_010749	17113	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	0.075000	0.641791	
mm_85573.1	chr9	107289307	107289507	-	1	NA	NA	NA	-11	NM_001316691	102626	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0.035000	0.606965	
mm_71667.1	chr8	60671479	60671679	+	1	NA	NA	NA	16022	NM_001177882	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	0.035000	0.557214	
mm_64433.1	chr7	142577947	142578147	+	1	NA	NA	NA	99	NR_130974	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.035000	0.621891	
mm_70287.1	chr8	3655672	3655872	+	1	NA	NA	NA	2	NM_022984	57264	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0.005000	0.542289	
mm_171619.1	chr4	152327404	152327604	+	1	NA	NA	NA	1778	NR_102291	19934	Mm.307846	NM_009079	ENSMUSG00000028936	Rpl22	2700038K18Rik	ribosomal protein L22	protein-coding	0.010000	0.477612	
mm_22744.1	chr3	19957025	19957225	+	1	NA	NA	NA	71	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.005000	0.393035	
mm_40006.1	chr5	32979043	32979243	+	1	NA	NA	NA	-39673	NM_011738	22629	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.000000	0.402985	-58(TCTTATAAAGTT,+,0.00)
mm_76054.1	chr8	77724064	77724264	-	1	NA	NA	NA	288	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	0.060000	0.641791	
mm_61351.1	chr7	68289378	68289578	+	1	NA	NA	NA	-12884	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.025000	0.497512	
mm_26425.1	chr3	142618201	142618401	+	1	NA	NA	NA	-2362	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.005000	0.383085	
mm_73064.1	chr8	94386429	94386629	+	1	NA	NA	NA	29	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.125000	0.681592	-66(GCCCATAAAAGG,-,0.00)
mm_21646.1	chr2	164333403	164333603	-	1	NA	NA	NA	738	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.040000	0.467662	-69(TGGTTTTAAAGG,-,0.00)
mm_45366.1	chr5	66018468	66018668	-	1	NA	NA	NA	-14283	NR_027961	231253	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.005000	0.303483	-83(TTTTTTAAAGTG,+,0.00)
mm_89719.1	chr10	98914332	98914532	+	1	NA	NA	NA	-720	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.150000	0.796020	
mm_46456.1	chr5	105117824	105118024	-	1	NA	NA	NA	-7632	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.010000	0.497512	
mm_159669.1	chr4	154299841	154300041	-	1	NA	NA	NA	-46	NM_001112744	230972	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.135000	0.800995	
mm_112215.1	chr12	113428557	113428757	-	1	NA	NA	NA	-60908	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.462687	
mm_117650.1	chr13	92794916	92795116	-	1	NA	NA	NA	-198	NM_011582	21828	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	0.045000	0.646766	
mm_85249.1	chr9	99140017	99140217	-	1	NA	NA	NA	94	NM_029094	74769	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol 3-kinase, catalytic, beta polypeptide	protein-coding	0.165000	0.776119	
mm_146522.1	chr18	4353132	4353332	-	1	NA	NA	NA	-279	NM_007746	26410	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.060000	0.656716	
mm_158896.1	chr1	23761799	23761999	+	1	NA	NA	NA	-27	NM_172124	280645	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0.075000	0.706468	
mm_40198.1	chr5	36868605	36868805	+	1	NA	NA	NA	135	NM_172994	269643	Mm.41694	NM_172994	ENSMUSG00000029120	Ppp2r2c	6330548O06Rik|IMYPNO|IMYPNO1|PR52	protein phosphatase 2, regulatory subunit B, gamma	protein-coding	0.165000	0.805970	
mm_76434.1	chr8	84985241	84985441	-	1	NA	NA	NA	-5254	NM_133255	170833	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	0.020000	0.507463	
mm_42658.1	chr5	119669849	119670049	+	1	NA	NA	NA	-913	NM_198052	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.050000	0.631841	
mm_113877.1	chr13	48968089	48968289	+	1	NA	NA	NA	77	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.175000	0.840796	9(GGCCCTTTAGGG,-,0.00),11(CCCTTTAGGGGG,+,0.00)
mm_71793.1	chr8	67333158	67333358	+	1	NA	NA	NA	-157500	NM_008673	17960	Mm.14125	NM_008673	ENSMUSG00000025588	Nat1	Nat-1	N-acetyl transferase 1	protein-coding	0.000000	0.333333	
mm_164470.1	chr16	65520505	65520705	+	1	NA	NA	NA	-24	NM_008849	18736	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.020000	0.442786	
mm_25438.1	chr3	108092957	108093157	+	1	NA	NA	NA	-9	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	0.035000	0.497512	
mm_165636.1	chr3	70040397	70040597	+	1	NA	NA	NA	32884	NM_001018031	229389	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1	protein-coding	0.005000	0.452736	
mm_110023.1	chr12	16788572	16788772	-	1	NA	NA	NA	12214	NM_015764	268527	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	0.010000	0.502488	
mm_86719.1	chr10	19015481	19015681	+	1	NA	NA	NA	-171	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.060000	0.532338	46(TTTTTTATAGCT,+,0.00)
mm_75536.1	chr8	57320653	57320853	-	1	NA	NA	NA	106	NR_110474	102636514		NR_110474	ENSMUSG00000100510	Uph	-	upperhand	ncRNA	0.015000	0.378109	
mm_31047.1	chr4	41135755	41135955	+	1	NA	NA	NA	-166	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.100000	0.791045	
mm_30378.1	chr3	152242712	152242912	-	1	NA	NA	NA	23508	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.005000	0.298507	
mm_27435.1	chr3	51561700	51561900	-	1	NA	NA	NA	-977	NM_080793	73251	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	0.020000	0.487562	-19(CGCTATTTAAAG,-,0.00),-17(CTATTTAAAGAG,+,0.00)
mm_24684.1	chr3	94954070	94954270	+	1	NA	NA	NA	-845	NM_017395	53970	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	0.065000	0.577114	
mm_153224.1	chr19	34877802	34878002	-	1	NA	NA	NA	15	NM_023792	75735	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	0.020000	0.462687	
mm_69889.1	chr7	141637134	141637334	-	1	NA	NA	NA	16533	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.025000	0.537313	
mm_171815.1	chr5	137601972	137602172	+	1	NA	NA	NA	-1013	NM_030037	68929	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	0.015000	0.437811	
mm_55169.1	chr6	51919985	51920185	-	1	NA	NA	NA	92464	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.000000	0.273632	
mm_97296.1	chr11	76454305	76454505	+	1	NA	NA	NA	14060	NM_001291186	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.025000	0.552239	
mm_169551.1	chr15	103242325	103242525	+	1	NA	NA	NA	1971	NR_002883	434858	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.030000	0.432836	-54(TCTTTTAAGGTC,+,0.00)
mm_90589.1	chr10	128271838	128272038	+	1	NA	NA	NA	1362	NM_019963	20847	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	0.005000	0.432836	
mm_72989.1	chr8	92994550	92994750	+	1	NA	NA	NA	33603	NM_009209	20538	Mm.57040	NM_009209	ENSMUSG00000055368	Slc6a2	NE-T|NET|Slc6a5	solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	protein-coding	0.005000	0.472637	-63(CTATTTATAGCC,+,0.00)
mm_115354.1	chr13	112800704	112800904	+	1	NA	NA	NA	27	NM_008247	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.125000	0.736318	
mm_158383.1	chrX	136085071	136085271	-	1	NA	NA	NA	84	NM_001024141	245610	Mm.336244	NM_001024141	ENSMUSG00000057000	Nxf3	Gm384	nuclear RNA export factor 3	protein-coding	0.030000	0.482587	
mm_141383.1	chr17	29079014	29079214	-	1	NA	NA	NA	12	NR_036469	100504267	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|OTTMUSG00000031656|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0.035000	0.621891	
mm_9492.1	chr1	173729454	173729654	-	1	NA	NA	NA	12255	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.010000	0.512438	
mm_119291.1	chr14	34673857	34674057	+	1	NA	NA	NA	29	NM_001301330	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.125000	0.716418	
mm_27051.1	chr3	27240471	27240671	-	1	NA	NA	NA	57567	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.020000	0.447761	
mm_5465.1	chr1	36534631	36534831	-	1	NA	NA	NA	1008	NM_153502	78321	Mm.41421	NM_153502	ENSMUSG00000067653	Ankrd23	1110058D09Rik|2310041C05Rik|AI853437|Darp|MARP3	ankyrin repeat domain 23	protein-coding	0.010000	0.517413	
mm_158898.1	chr1	25826725	25826925	-	1	NA	NA	NA	2882	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.020000	0.368159	
mm_159376.1	chr3	89391888	89392088	-	1	NA	NA	NA	124	NR_040403	545539	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	ENSMUSG00000074466|OTTMUSG00000021274	predicted gene 15417	ncRNA	0.080000	0.741294	
mm_151750.1	chr19	5092910	5093110	-	1	NA	NA	NA	4472	NM_026553	68090	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	0.005000	0.601990	
mm_142776.1	chr17	50094164	50094364	-	1	NA	NA	NA	96233	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.015000	0.457711	
mm_155271.1	chrX	59999366	59999566	+	1	NA	NA	NA	2	NM_001305797	14071	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	0.025000	0.457711	
mm_169528.1	chr14	91647552	91647752	+	1	NA	NA	NA	1520761	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA	0.015000	0.487562	-31(TACTATATAAGC,-,0.00)
mm_140895.1	chr17	24073167	24073367	-	1	NA	NA	NA	218	NM_027008	69259	Mm.28171	NM_027008	ENSMUSG00000016946	Kctd5	2610030N08Rik|mKIAA0176	potassium channel tetramerisation domain containing 5	protein-coding	0.100000	0.701493	
mm_120527.1	chr14	66966695	66966895	+	1	NA	NA	NA	42082	NM_009761	12177	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0.010000	0.383085	
mm_125654.1	chr15	63255846	63256046	+	1	NA	NA	NA	223662	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA	0.000000	0.507463	
mm_78241.1	chr9	21627279	21627479	+	1	NA	NA	NA	11210	NM_001174078	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.000000	0.422886	
mm_63868.1	chr7	135713020	135713220	+	1	NA	NA	NA	3259	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.015000	0.482587	
mm_52943.1	chr6	122952444	122952644	+	1	NA	NA	NA	29	NM_001204241	73149	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.015000	0.512438	
mm_108172.1	chr12	76404381	76404581	+	1	NA	NA	NA	111	NM_008301	15512	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0.090000	0.592040	
mm_130012.1	chr15	86706342	86706542	-	1	NA	NA	NA	491983	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.025000	0.522388	
mm_170346.1	chr18	50134984	50135184	+	1	NA	NA	NA	6883	NM_008292	15488	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.005000	0.477612	
mm_44044.1	chr5	147681814	147682014	+	1	NA	NA	NA	44074	NM_010228	14254	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.030000	0.487562	
mm_139954.1	chr17	71259901	71260101	+	1	NA	NA	NA	50964	NM_145158	246707	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.020000	0.562189	
mm_11281.1	chr2	30062625	30062825	+	1	NA	NA	NA	729	NM_023871	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.035000	0.597015	
mm_34657.1	chr4	150866286	150866486	+	1	NA	NA	NA	11295	NM_133753	74155	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.020000	0.507463	
mm_21363.1	chr2	157131091	157131291	-	1	NA	NA	NA	4031	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.005000	0.452736	
mm_39874.1	chr5	31076970	31077170	+	1	NA	NA	NA	16457	NM_011773	22784	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.030000	0.636816	
mm_35926.1	chr4	53032144	53032344	-	1	NA	NA	NA	20364	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.030000	0.353234	
mm_80910.1	chr9	100643534	100643734	+	1	NA	NA	NA	11	NM_009282	20842	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	0.100000	0.691542	
mm_104495.1	chr11	95837481	95837681	-	1	NA	NA	NA	-4714	NM_023121	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.005000	0.532338	
mm_47139.1	chr5	120548202	120548402	-	1	NA	NA	NA	37110	NM_001177594	170756	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.025000	0.562189	
mm_118541.1	chr14	16410150	16410350	+	1	NA	NA	NA	45044	NM_009409	21974	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.005000	0.303483	
mm_97991.1	chr11	83964349	83964549	+	1	NA	NA	NA	18	NM_194341	217030	Mm.82680	NM_194341	ENSMUSG00000034940	Synrg	Ap1gbp1|SYNG	synergin, gamma	protein-coding	0.145000	0.796020	
mm_104645.1	chr11	97539686	97539886	-	1	NA	NA	NA	35340	NM_018873	56013	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.010000	0.567164	
mm_37343.1	chr4	119658539	119658739	-	1	NA	NA	NA	306	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.010000	0.577114	
mm_2929.1	chr1	132298402	132298602	+	1	NA	NA	NA	-124	NM_144810	213417	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0.035000	0.567164	
mm_165256.1	chr2	72633745	72633945	+	1	NA	NA	NA	-69665	NR_040503	74541	Mm.410774	NR_040503	ENSMUSG00000085252	8430437L04Rik	-	RIKEN cDNA 8430437L04 gene	ncRNA	0.050000	0.527363	
mm_13803.1	chr2	119034726	119034926	+	1	NA	NA	NA	36	NM_173450	271842	Mm.33617	NM_173450	ENSMUSG00000027324	Rpusd2	4921503C21Rik|9630001E10|BB231107	RNA pseudouridylate synthase domain containing 2	protein-coding	0.055000	0.601990	
mm_519.1	chr1	37494482	37494682	+	1	NA	NA	NA	-5977	NR_024017	77633	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.015000	0.437811	
mm_84069.1	chr9	58201435	58201635	-	1	NA	NA	NA	180	NM_001161535	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.070000	0.547264	
mm_63746.1	chr7	130943384	130943584	+	1	NA	NA	NA	7281	NM_019564	56213	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	0.020000	0.492537	
mm_125109.1	chr15	27924150	27924350	+	1	NA	NA	NA	101598	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.010000	0.402985	
mm_66919.1	chr7	60097514	60097714	-	1	NA	NA	NA	-6	NM_001082961	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding	0.010000	0.522388	
mm_16271.1	chr2	173685533	173685733	+	1	NA	NA	NA	15515	NR_105758	102465173		NR_105758	ENSMUSG00000098588	Mir6340	Gm27909|mmu-mir-6340	microRNA 6340	ncRNA	0.020000	0.472637	
mm_101888.1	chr11	48994084	48994284	-	1	NA	NA	NA	-1938	NM_011579	21822	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	0.005000	0.447761	
mm_32732.1	chr4	116560050	116560250	+	1	NA	NA	NA	2423	NM_029868	77110	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	0.000000	0.368159	
mm_38380.1	chr4	138725165	138725365	-	1	NA	NA	NA	0	NR_104373	212190	Mm.292226	NM_178671	ENSMUSG00000043621	Ubxn10	5730509E04Rik|A830047D02|Ubxd3	UBX domain protein 10	protein-coding	0.065000	0.676617	
mm_114790.1	chr13	89540593	89540793	+	1	NA	NA	NA	57	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.025000	0.527363	
mm_120754.1	chr14	73362309	73362509	+	1	NA	NA	NA	22862	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.005000	0.303483	
mm_144612.1	chr18	32816760	32816960	+	1	NA	NA	NA	0	NR_033206	53603	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	0.025000	0.572139	
mm_21584.1	chr2	164237213	164237413	-	1	NA	NA	NA	1028	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.005000	0.407960	
mm_162255.1	chrX	168577339	168577539	-	1	NA	NA	NA	-206	NM_001033330	333605	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	0.005000	0.373134	
mm_60003.1	chr7	30712119	30712319	+	1	NA	NA	NA	10	NM_001290627	11944	Mm.12821	NM_018731	ENSMUSG00000005553	Atp4a	-	ATPase, H+/K+ exchanging, gastric, alpha polypeptide	protein-coding	0.005000	0.597015	
mm_82525.1	chr9	20644658	20644858	-	1	NA	NA	NA	9	NM_001286529	30843	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding	0.065000	0.542289	
mm_151806.1	chr19	5425278	5425478	-	1	NA	NA	NA	234	NM_001256515	107242	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	0.065000	0.656716	
mm_32731.1	chr4	116557973	116558173	+	1	NA	NA	NA	346	NM_029868	77110	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	0.090000	0.626866	
mm_101526.1	chr11	33147718	33147918	-	1	NA	NA	NA	-418	NR_102395	14172	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	0.155000	0.766169	
mm_103785.1	chr11	82804326	82804526	-	1	NA	NA	NA	23317	NM_010716	16882	Mm.277136	NM_010716	ENSMUSG00000020697	Lig3	D11Wsu78e	ligase III, DNA, ATP-dependent	protein-coding	0.010000	0.452736	
mm_7427.1	chr1	119837194	119837394	-	1	NA	NA	NA	-223	NM_019933	19258	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	0.105000	0.641791	
mm_105509.1	chr11	106210345	106210545	-	1	NA	NA	NA	5922	NM_026009	67163	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	0.010000	0.402985	
mm_71175.1	chr8	40674952	40675152	+	1	NA	NA	NA	-25	NM_010086	13526	Mm.67403	NM_010086	ENSMUSG00000046723	Adam24	Dtgn5	a disintegrin and metallopeptidase domain 24 (testase 1)	protein-coding	0.000000	0.383085	-1(TGCTTTAAAAAG,-,0.00),1(CTTTAAAAAGTG,+,0.00)
mm_149311.1	chr19	10759719	10759919	+	1	NA	NA	NA	18872	NR_027805	403202	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0.000000	0.522388	
mm_136770.1	chr17	8992157	8992357	+	1	NA	NA	NA	3924	NM_001347544	66931	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	0.020000	0.542289	
mm_24019.1	chr3	87526319	87526519	+	1	NA	NA	NA	841	NM_012051	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.025000	0.522388	
mm_64925.1	chr7	16273196	16273396	-	1	NA	NA	NA	396	NM_001136270	66300	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	0.090000	0.746269	
mm_162660.1	chr10	5148917	5149117	+	1	NA	NA	NA	45690	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.010000	0.492537	
mm_75922.1	chr8	71486236	71486436	-	1	NA	NA	NA	-269	NM_001164679	382014	Mm.260360	NM_001164679	ENSMUSG00000034863	Ano8	BC053460|Tmem16h	anoctamin 8	protein-coding	0.025000	0.527363	
mm_1494.1	chr1	71887999	71888199	+	1	NA	NA	NA	-13	NR_027658	667931	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	0.010000	0.606965	
mm_113077.1	chr13	23806999	23807199	+	1	NA	NA	NA	72	NM_144836	218103	Mm.24030	NM_144836	ENSMUSG00000036110	Slc17a2	C730032N17Rik|NPT3	solute carrier family 17 (sodium phosphate), member 2	protein-coding	0.005000	0.358209	
mm_8922.1	chr1	163403512	163403712	-	1	NA	NA	NA	57	NM_001313738	98376	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	0.060000	0.597015	
mm_166958.1	chr7	44477842	44478042	+	1	NA	NA	NA	-6575	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.502488	
mm_115057.1	chr13	100669626	100669826	+	1	NA	NA	NA	245	NM_001168386	76041	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	0.070000	0.601990	
mm_157790.1	chrX	73854321	73854521	-	1	NA	NA	NA	26413	NM_008478	16728	Mm.260568	NM_008478	ENSMUSG00000031391	L1cam	CD171|L1|N-CAM-L1|NCAM-L1	L1 cell adhesion molecule	protein-coding	0.005000	0.527363	
mm_15038.1	chr2	152787712	152787912	+	1	NA	NA	NA	33639	NM_053091	84682	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit IV isoform 2	protein-coding	0.030000	0.477612	
mm_19568.1	chr2	101628921	101629121	-	1	NA	NA	NA	-35	NM_026592	68170	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding	0.030000	0.477612	53(CCTTATAGGCTG,+,0.00)
mm_65091.1	chr7	19265905	19266105	-	1	NA	NA	NA	5849	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.000000	0.582090	
mm_148565.1	chr19	4756490	4756690	+	1	NA	NA	NA	65	NM_025717	66704	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	0.140000	0.721393	
mm_98143.1	chr11	87581050	87581250	+	1	NA	NA	NA	89	NM_001284392	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding	0.020000	0.567164	
mm_57698.1	chr6	128525090	128525290	-	1	NA	NA	NA	1530	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.020000	0.537313	-67(TCCCTGAAAAGG,-,0.00)
mm_24015.1	chr3	87435725	87435925	+	1	NA	NA	NA	43	NM_001113238	329693	Mm.331122	NM_183222	ENSMUSG00000048031	Fcrl5	Fcrh3|mBXMH2	Fc receptor-like 5	protein-coding	0.010000	0.432836	
mm_26423.1	chr3	142618112	142618312	+	1	NA	NA	NA	-2451	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.015000	0.427861	
mm_162443.1	chr1	116181945	116182145	-	1	NA	NA	NA	496908	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.020000	0.422886	86(GGTTATTAAAAG,-,0.00)
mm_115795.1	chr13	19343162	19343362	-	1	NA	NA	NA	52551	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.368159	
mm_170796.1	chr2	175372379	175372579	+	1	NA	NA	NA	17	NM_001177404	100303732	Mm.484983	NM_001177404	ENSMUSG00000095199	Zfp967	Gm14431|OTTMUSG00000016608	zinc finger protein 967	protein-coding	0.015000	0.487562	
mm_104698.1	chr11	97986328	97986528	-	1	NA	NA	NA	18	NM_028199	72324	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0.155000	0.810945	
mm_125189.1	chr15	32481205	32481405	+	1	NA	NA	NA	236492	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding	0.005000	0.452736	
mm_57675.1	chr6	128494673	128494873	-	1	NA	NA	NA	31947	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.015000	0.472637	-88(CCATTTAAAGCC,+,0.00)
mm_16008.1	chr2	167375259	167375459	+	1	NA	NA	NA	-26181	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.020000	0.507463	
mm_155436.1	chrX	73494561	73494761	+	1	NA	NA	NA	-8425	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.015000	0.532338	
mm_41563.1	chr5	93133460	93133660	+	1	NA	NA	NA	40144	NM_001347377	52398	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.010000	0.427861	-55(CCCTTGATAAGG,-,0.00),7(GGGTTTTAAAGT,-,0.00)
mm_55928.1	chr6	84587862	84588062	-	1	NA	NA	NA	5848	NM_175475	232174	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.085000	0.696517	
mm_132739.1	chr16	43889842	43890042	+	1	NA	NA	NA	40	NM_027801	212153	Mm.209835	NM_027801	ENSMUSG00000022701	Ccdc191	2610015P09Rik|8430422M09Rik|AU040712	coiled-coil domain containing 191	protein-coding	0.040000	0.562189	
mm_11433.1	chr2	31974338	31974538	+	1	NA	NA	NA	-12	NM_172268	227720	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	0.120000	0.671642	
mm_107831.1	chr12	69241771	69241971	+	1	NA	NA	NA	39	NM_178253	271005	Mm.180969	NM_178253	ENSMUSG00000051890	Klhdc1	-	kelch domain containing 1	protein-coding	0.160000	0.776119	
mm_68886.1	chr7	126447899	126448099	-	1	NA	NA	NA	15074	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.010000	0.567164	
mm_165943.1	chr4	81452237	81452437	-	1	NA	NA	NA	-9522	NM_001305284	17475	Mm.153039	NM_010820	ENSMUSG00000028402	Mpdz	AI225843|B930003D11Rik|MUPP1	multiple PDZ domain protein	protein-coding	0.010000	0.447761	
mm_21040.1	chr2	152511684	152511884	-	1	NA	NA	NA	-48	NM_001039120	654457	Mm.389363	NM_001039120	ENSMUSG00000074680	Defb26	EG654457	defensin beta 26	protein-coding	0.005000	0.457711	-92(CCTTTAATGATC,+,0.00)
mm_167305.1	chr8	60506081	60506281	+	1	NA	NA	NA	57	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.035000	0.547264	
mm_18870.1	chr2	75978085	75978285	-	1	NA	NA	NA	-6	NM_001081228	620631	Mm.389286	NM_001081228	ENSMUSG00000075272	Ttc30a2	OTTMUSG00000015167	tetratricopeptide repeat domain 30A2	protein-coding	0.040000	0.487562	
mm_30038.1	chr3	135691400	135691600	-	1	NA	NA	NA	47	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.115000	0.686567	
mm_7505.1	chr1	121567829	121568029	-	1	NA	NA	NA	51	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	0.090000	0.601990	
mm_81397.1	chr9	108991892	108992092	+	1	NA	NA	NA	90	NM_173019	270198	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0.065000	0.646766	
mm_86410.1	chr10	3366089	3366289	+	1	NA	NA	NA	39	NM_133485	76142	Mm.308126	NM_133485	ENSMUSG00000040653	Ppp1r14c	6330514J04Rik|KEPI	protein phosphatase 1, regulatory (inhibitor) subunit 14c	protein-coding	0.070000	0.601990	
mm_96208.1	chr11	62281329	62281529	+	1	NA	NA	NA	-34	NM_027198	69747	Mm.141150	NM_027198	ENSMUSG00000014243	Zswim7	2410012H22Rik	zinc finger SWIM-type containing 7	protein-coding	0.140000	0.721393	
mm_82809.1	chr9	29963050	29963250	-	1	NA	NA	NA	-21	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.035000	0.522388	
mm_49101.1	chr6	7871461	7871661	+	1	NA	NA	NA	26337	NM_052993	94192	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.000000	0.373134	-85(GTTTTTAAATGG,-,0.00)
mm_58269.1	chr6	145341667	145341867	-	1	NA	NA	NA	-45858	NR_003625	381827	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	0.040000	0.482587	
mm_85752.1	chr9	108648520	108648720	-	1	NA	NA	NA	760	NM_011790	23807	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.055000	0.437811	
mm_80249.1	chr9	72749005	72749205	+	1	NA	NA	NA	-58169	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.015000	0.452736	
mm_109521.1	chr12	111454570	111454770	+	1	NA	NA	NA	12009	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.010000	0.567164	
mm_81940.1	chr9	120401818	120402018	+	1	NA	NA	NA	-90688	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.000000	0.427861	72(GTTTTTAAAGTT,+,0.00)
mm_48938.1	chr6	4538634	4538834	+	1	NA	NA	NA	33116	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.020000	0.492537	
mm_35960.1	chr4	53136949	53137149	-	1	NA	NA	NA	22846	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.010000	0.268657	
mm_27835.1	chr3	79140713	79140913	-	1	NA	NA	NA	4074	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.005000	0.477612	
mm_114398.1	chr13	63293063	63293263	+	1	NA	NA	NA	3984	NR_045794	100504114	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	0.005000	0.393035	
mm_166289.1	chr5	100650401	100650601	+	1	NA	NA	NA	23755	NM_027978	71883	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0.015000	0.422886	
mm_82608.1	chr9	21592664	21592864	-	1	NA	NA	NA	42	NM_178619	69773	Mm.39704	NM_178619	ENSMUSG00000048429	Timm29	1810026J23Rik	translocase of inner mitochondrial membrane 29	protein-coding	0.055000	0.557214	
mm_61718.1	chr7	81762872	81763072	+	1	NA	NA	NA	19	NM_025997	67148	Mm.241472	NM_025997	ENSMUSG00000038646	Fam103a1	2410047I02Rik|2610204K14Rik|RAM	family with sequence similarity 103, member A1	protein-coding	0.085000	0.626866	
mm_44969.1	chr5	36796605	36796805	-	1	NA	NA	NA	49	NM_026242	67568	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0.130000	0.641791	
mm_8742.1	chr1	160247577	160247777	-	1	NA	NA	NA	-34785	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0.025000	0.527363	
mm_152914.1	chr19	27421304	27421504	-	1	NA	NA	NA	8504	NM_177474	52874	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e|Kiaa0020	pumilio RNA-binding family member 3	protein-coding	0.035000	0.467662	-37(AAGTTTTAAAGG,-,0.00),-35(GTTTTAAAGGTC,+,0.00)
mm_143268.1	chr17	65642071	65642271	-	1	NA	NA	NA	33	NM_001146002	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.020000	0.497512	
mm_15532.1	chr2	158382893	158383093	+	1	NA	NA	NA	7355	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.020000	0.398010	
mm_129841.1	chr15	83154485	83154685	-	1	NA	NA	NA	4940	NR_004432	104307	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.025000	0.601990	
mm_117874.1	chr13	98926202	98926402	-	1	NA	NA	NA	82	NM_178716	238799	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.125000	0.736318	
mm_69068.1	chr7	126949410	126949610	-	1	NA	NA	NA	71	NM_001347657	233879	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0.045000	0.601990	
mm_121704.1	chr14	15438726	15438926	-	1	NA	NA	NA	161	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding	0.140000	0.741294	
mm_167024.1	chr7	67167180	67167380	+	1	NA	NA	NA	55178	NR_131044	76628	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0.005000	0.388060	
mm_7578.1	chr1	124846022	124846222	-	1	NA	NA	NA	589605	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.015000	0.412935	-62(CCCTTTAAACTG,+,0.00)
mm_53446.1	chr6	134414372	134414572	+	1	NA	NA	NA	18143	NM_025778	66813	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.015000	0.537313	
mm_28775.1	chr3	95929511	95929711	-	1	NA	NA	NA	354	NM_023210	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.025000	0.547264	
mm_150193.1	chr19	32665826	32666026	+	1	NA	NA	NA	45921	NM_011864	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.005000	0.427861	
mm_87162.1	chr10	36974469	36974669	+	1	NA	NA	NA	25	NM_008229	15182	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.140000	0.781095	
mm_53206.1	chr6	125690303	125690503	+	1	NA	NA	NA	-16	NM_153589	243634	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.040000	0.597015	
mm_1260.1	chr1	63176769	63176969	+	1	NA	NA	NA	38	NM_018796	55949	Mm.2718	NM_018796	ENSMUSG00000025967	Eef1b2	2810017J07Rik|Eef1b	eukaryotic translation elongation factor 1 beta 2	protein-coding	0.090000	0.547264	
mm_70818.1	chr8	23123179	23123379	+	1	NA	NA	NA	-15751	NM_001310436	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.010000	0.507463	
mm_67576.1	chr7	82174604	82174804	-	1	NA	NA	NA	-85204	NM_001277955	20408	Mm.736	NM_017400	ENSMUSG00000030638	Sh3gl3	EEN-B2|SH3P13|Sh3d2c|Sh3d2c2	SH3-domain GRB2-like 3	protein-coding	0.050000	0.592040	
mm_20936.1	chr2	150874975	150875175	-	1	NA	NA	NA	29656	NM_024465	76192	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.000000	0.487562	
mm_84384.1	chr9	65422803	65423003	-	1	NA	NA	NA	-130	NM_178933	330962	Mm.335247	NM_178933	ENSMUSG00000053862	Slc51b	Ostb	solute carrier family 51, beta subunit	protein-coding	0.010000	0.532338	
mm_66324.1	chr7	42505616	42505816	-	1	NA	NA	NA	37	NM_001309389	434178	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	0.050000	0.567164	
mm_41744.1	chr5	102768811	102769011	+	1	NA	NA	NA	101	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.020000	0.532338	
mm_138936.1	chr17	43909002	43909202	+	1	NA	NA	NA	-43897	NM_001286654	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.010000	0.432836	
mm_164047.1	chr14	99147768	99147968	+	1	NA	NA	NA	-48098	NM_028315	72662	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	0.005000	0.477612	
mm_48724.1	chr5	147400184	147400384	-	1	NA	NA	NA	205	NM_010229	14255	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	0.115000	0.741294	
mm_6156.1	chr1	65018329	65018529	-	1	NA	NA	NA	14330	NM_027582	70861	Mm.18725	NM_027582	ENSMUSG00000025955	Akr1cl	4921521F21Rik|AI451536|AI503553	aldo-keto reductase family 1, member C-like	protein-coding	0.000000	0.462687	-99(TCTTTTAAAATC,+,0.00)
mm_45090.1	chr5	44101607	44101807	-	1	NA	NA	NA	29	NM_008935	19126	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.060000	0.636816	
mm_140207.1	chr17	83775480	83775680	+	1	NA	NA	NA	69417	NM_001171052	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.050000	0.621891	
mm_164891.1	chr18	61884575	61884775	-	1	NA	NA	NA	27149	NM_198649	319713	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	0.005000	0.417910	
mm_86765.1	chr10	19933839	19934039	+	1	NA	NA	NA	-587	NM_008580	26408	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.090000	0.701493	
mm_31182.1	chr4	43518326	43518526	+	1	NA	NA	NA	5128	NM_009416	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.030000	0.497512	38(ACTTTAAGAGAC,+,0.00)
mm_122928.1	chr14	54961335	54961535	-	1	NA	NA	NA	5172	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.010000	0.517413	
mm_68229.1	chr7	104445954	104446154	-	1	NA	NA	NA	19139	NM_009099	20128	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.000000	0.477612	
mm_72137.1	chr8	71922793	71922993	+	1	NA	NA	NA	68	NM_133358	170938	Mm.480419	NM_133358	ENSMUSG00000066880	Zfp617	Zfps11-6	zinc finger protein 617	protein-coding	0.070000	0.666667	
mm_82356.1	chr9	14381061	14381261	-	1	NA	NA	NA	81	NM_028013	71946	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0.075000	0.696517	
mm_72796.1	chr8	87101620	87101820	+	1	NA	NA	NA	98130	NR_040697	100038706	Mm.334690	NR_040697	ENSMUSG00000099207	Gm10637	ENSMUSG00000074176	predicted gene 10637	ncRNA	0.005000	0.512438	
mm_135714.1	chr16	55798855	55799055	-	1	NA	NA	NA	23183	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.020000	0.472637	
mm_67937.1	chr7	100120970	100121170	-	1	NA	NA	NA	430	NM_133692	67967	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0.050000	0.611940	
mm_132919.1	chr16	49770518	49770718	+	1	NA	NA	NA	71324	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.020000	0.412935	
mm_64795.1	chr7	6685211	6685411	-	1	NA	NA	NA	11121	NM_011769	22776	Mm.89976	NM_011769	ENSMUSG00000002266	Zim1	-	zinc finger, imprinted 1	protein-coding	0.000000	0.328358	-54(CACCATATATGC,-,0.00),-52(CCATATATGCAC,+,0.00)
mm_752.1	chr1	43730592	43730792	+	1	NA	NA	NA	90	NM_024283	78896	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	0.035000	0.626866	
mm_88508.1	chr10	77893339	77893539	+	1	NA	NA	NA	19	NR_015547	75188	Mm.348012	NM_029200	ENSMUSG00000096573	1700009J07Rik	4930535B06Rik	RIKEN cDNA 1700009J07 gene	ncRNA	0.005000	0.527363	
mm_134040.1	chr16	5132371	5132571	-	1	NA	NA	NA	10	NM_008909	19041	Mm.266875	NM_008909	ENSMUSG00000039457	Ppl	AW553870	periplakin	protein-coding	0.155000	0.756219	
mm_172031.1	chr6	124636876	124637076	-	1	NA	NA	NA	-891	NM_173864	317677	Mm.483270	NM_173864	ENSMUSG00000079343	C1s2	C1sb|EG317677|Gm5077	complement component 1, s subcomponent 2	protein-coding	0.000000	0.507463	64(ATCTTTAAAAAG,-,0.00),66(CTTTAAAAAGCA,+,0.00)
mm_3208.1	chr1	135826804	135827004	+	1	NA	NA	NA	8306	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding	0.000000	0.442786	61(TTTTTAAGAGCC,+,0.00)
mm_45776.1	chr5	87092439	87092639	-	1	NA	NA	NA	16	NM_001029867	231396	Mm.439851	NM_001029867	ENSMUSG00000070704	Ugt2b36	-	UDP glucuronosyltransferase 2 family, polypeptide B36	protein-coding	0.000000	0.402985	
mm_3245.1	chr1	136052715	136052915	+	1	NA	NA	NA	-86	NM_001081023	12292	Mm.4418	NM_014193	ENSMUSG00000026407	Cacna1s	AW493108|Cav1.1|Cchl1a3|fmd|mdg|sj	calcium channel, voltage-dependent, L type, alpha 1S subunit	protein-coding	0.030000	0.651741	
mm_98815.1	chr11	97309552	97309752	+	1	NA	NA	NA	-6064	NM_025927	67036	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.020000	0.582090	
mm_133493.1	chr16	90385823	90386023	+	1	NA	NA	NA	-474	NM_015755	26559	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.090000	0.616915	
mm_7305.1	chr1	97977191	97977391	-	1	NA	NA	NA	70502	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA	0.050000	0.512438	
mm_110806.1	chr12	72212435	72212635	-	1	NA	NA	NA	23211	NR_104446	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.025000	0.507463	
mm_159855.1	chr5	137871622	137871822	-	1	NA	NA	NA	36	NM_001024932	545812	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.010000	0.552239	
mm_164608.1	chr17	30901745	30901945	+	1	NA	NA	NA	-22	NM_021332	14652	Mm.390969	NM_021332	ENSMUSG00000024027	Glp1r	GLP-1R|GLP1Rc	glucagon-like peptide 1 receptor	protein-coding	0.105000	0.776119	
mm_99497.1	chr11	102885047	102885247	+	1	NA	NA	NA	-22	NM_025766	66784	Mm.483216	NM_025766	ENSMUSG00000075510	Fam187a	4933439F11Rik	family with sequence similarity 187, member A	protein-coding	0.025000	0.497512	
mm_109343.1	chr12	109599182	109599382	+	1	NA	NA	NA	-3879	NM_184109	353326	Mm.23062	NM_184109	ENSMUSG00000085925	Rtl1	6430411K18Rik|Mar|Mart1|Mor1|Peg11	retrotransposon-like 1	protein-coding	0.000000	0.328358	-6(TTTTTTAAAGCC,+,0.00)
mm_8133.1	chr1	136234024	136234224	-	1	NA	NA	NA	156	NM_028872	67313	Mm.36763	NM_028872	ENSMUSG00000041605	5730559C18Rik	1700034M08Rik|4933426C09Rik|AI586180|D1Mgi54	RIKEN cDNA 5730559C18 gene	protein-coding	0.035000	0.547264	
mm_129529.1	chr15	79285328	79285528	-	1	NA	NA	NA	81	NM_177580	207495	Mm.309647	NM_177580	ENSMUSG00000018126	Baiap2l2	BC048937	BAI1-associated protein 2-like 2	protein-coding	0.010000	0.626866	
mm_34324.1	chr4	141859262	141859462	+	1	NA	NA	NA	-13003	NM_001033875	76701	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	0.020000	0.567164	
mm_42623.1	chr5	118169628	118169828	+	1	NA	NA	NA	-36	NM_007545	12123	Mm.384468	NM_007545	ENSMUSG00000046607	Hrk	AI838259|Bid3|DP5|harakiri	harakiri, BCL2 interacting protein (contains only BH3 domain)	protein-coding	0.105000	0.681592	
mm_105908.1	chr11	114983114	114983314	-	1	NA	NA	NA	6672	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.005000	0.507463	
mm_92052.1	chr10	62503860	62504060	-	1	NA	NA	NA	3795	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.000000	0.383085	
mm_7797.1	chr1	131525151	131525351	-	1	NA	NA	NA	2110	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.060000	0.651741	
mm_1692.1	chr1	75142358	75142558	+	1	NA	NA	NA	-90	NM_026977	69171	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0.045000	0.577114	
mm_133368.1	chr16	84708782	84708982	+	1	NA	NA	NA	-4141	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.005000	0.482587	
mm_91108.1	chr10	19170592	19170792	-	1	NA	NA	NA	3454	NR_038022	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.010000	0.487562	
mm_141853.1	chr17	34802918	34803118	-	1	NA	NA	NA	1408	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.015000	0.621891	
mm_89617.1	chr10	96163460	96163660	+	1	NA	NA	NA	-62647	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.015000	0.432836	
mm_123259.1	chr14	61257902	61258102	-	1	NA	NA	NA	488	NM_011892	24053	Mm.72173	NM_011892	ENSMUSG00000035296	Sgcg	35kDa|5430420E18Rik|AI642964|gamma-SG	sarcoglycan, gamma (dystrophin-associated glycoprotein)	protein-coding	0.015000	0.383085	
mm_173310.1	chrY	90734796	90734996	+	1	NA	NA	NA	20154	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.482587	
mm_150628.1	chr19	41344812	41345012	+	1	NA	NA	NA	40158	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.030000	0.537313	
mm_10413.1	chr2	13579473	13579673	+	1	NA	NA	NA	5262	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.020000	0.472637	-42(TGCCCTTAAAGG,-,0.00),-41(GCCCTTAAAGGC,+,0.00),-41(GCCCTTAAAGGC,-,0.00),-40(CCCTTAAAGGCA,+,0.00),-39(CCTTAAAGGCAC,+,0.00)
mm_7987.1	chr1	134234791	134234991	-	1	NA	NA	NA	-35	NM_001291928	11539	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri	adenosine A1 receptor	protein-coding	0.090000	0.651741	-51(CCTCTTTAAAGG,-,0.00),-50(CTCTTTAAAGGC,+,0.00),-50(CTCTTTAAAGGC,-,0.00),-49(TCTTTAAAGGCG,+,0.00)
mm_152780.1	chr19	21174795	21174995	-	1	NA	NA	NA	70185	NR_126458	75354	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.015000	0.507463	
mm_135784.1	chr16	56928008	56928208	-	1	NA	NA	NA	-169	NM_001347042	100503609	Mm.457937	NM_001347042	ENSMUSG00000109588	Lnp1	Gm19797	leukemia NUP98 fusion partner 1	protein-coding	0.010000	0.422886	
mm_112678.1	chr13	16027923	16028123	+	1	NA	NA	NA	16172	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.348259	
mm_42403.1	chr5	114969778	114969978	+	1	NA	NA	NA	1184	NM_009327	21405	Mm.332607	NM_009327	ENSMUSG00000029556	Hnf1a	AI323641|HNF1|HNF1-alpha|HNF1[a]|Hnf-1|Hnf1alpha|LFB1|Tcf-1|Tcf1	HNF1 homeobox A	protein-coding	0.025000	0.507463	
mm_81022.1	chr9	104361741	104361941	+	1	NA	NA	NA	-24119	NM_207668	56318	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	0.025000	0.547264	
mm_93983.1	chr10	127370405	127370605	-	1	NA	NA	NA	43	NM_010565	16325	Mm.2594	NM_010565	ENSMUSG00000025405	Inhbc	-	inhibin beta-C	protein-coding	0.020000	0.522388	
mm_5091.1	chr1	4602069	4602269	-	1	NA	NA	NA	-104815	NM_001289465	20671	Mm.279103	NM_011441	ENSMUSG00000025902	Sox17	-	SRY (sex determining region Y)-box 17	protein-coding	0.015000	0.462687	
mm_12239.1	chr2	68860984	68861184	+	1	NA	NA	NA	-357	NM_172856	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.030000	0.572139	
mm_10724.1	chr2	22855090	22855290	+	1	NA	NA	NA	-40332	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.000000	0.482587	
mm_107255.1	chr12	28675107	28675307	+	1	NA	NA	NA	0	NM_134052	104923	Mm.291504	NM_134052	ENSMUSG00000020629	Adi1	AL024210|Fe-ARD|MTCBP-1|Ni-ARD	acireductone dioxygenase 1	protein-coding	0.080000	0.661692	
mm_47276.1	chr5	122019312	122019512	-	1	NA	NA	NA	28413	NM_007804	13048	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2|ENSMUSG00000072641	cut-like homeobox 2	protein-coding	0.040000	0.592040	
mm_159248.1	chr2	151973835	151974035	-	1	NA	NA	NA	46	NM_001289150	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.055000	0.646766	
mm_92602.1	chr10	80105472	80105672	-	1	NA	NA	NA	-2870	NM_183426	216161	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch homolog 2 (Drosophila)	protein-coding	0.015000	0.621891	
mm_161946.1	chr19	4305626	4305826	-	1	NA	NA	NA	496	NM_130863	110355	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.060000	0.681592	
mm_18995.1	chr2	76867980	76868180	-	1	NA	NA	NA	114467	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.020000	0.457711	
mm_11976.1	chr2	55114138	55114338	+	1	NA	NA	NA	-321732	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.000000	0.353234	64(TTCTATAAAAAG,-,0.00)
mm_94803.1	chr11	23007430	23007630	+	1	NA	NA	NA	-5857	NM_028672	73873	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0.025000	0.537313	
mm_81216.1	chr9	107587629	107587829	+	1	NA	NA	NA	11	NM_025903	15983	Mm.215335	NM_025903	ENSMUSG00000010048	Ifrd2	1810034A24Rik|AA470234|AI838527|SKMc15	interferon-related developmental regulator 2	protein-coding	0.095000	0.636816	
mm_117589.1	chr13	89712181	89712381	-	1	NA	NA	NA	30231	NM_001081249	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.035000	0.512438	
mm_135215.1	chr16	36648909	36649109	-	1	NA	NA	NA	17068	NM_019388	12524	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.010000	0.363184	
mm_146158.1	chr18	75018663	75018863	+	1	NA	NA	NA	-9	NM_027727	69190	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	0.120000	0.691542	
mm_107029.1	chr12	13269033	13269233	+	1	NA	NA	NA	6	NM_027706	71169	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	0.090000	0.611940	
mm_48010.1	chr5	136164995	136165195	-	1	NA	NA	NA	5561	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.005000	0.492537	
mm_25194.1	chr3	103735761	103735961	+	1	NA	NA	NA	2140	NM_133859	99543	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	0.020000	0.482587	
mm_165185.1	chr2	29889891	29890091	+	1	NA	NA	NA	-72	NM_013615	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.140000	0.751244	
mm_64566.1	chr7	144896431	144896631	+	1	NA	NA	NA	-1	NM_008003	14170	Mm.3904	NM_008003	ENSMUSG00000031073	Fgf15	FGF19	fibroblast growth factor 15	protein-coding	0.090000	0.636816	-33(ACGTATATAAGG,-,0.00)
mm_54883.1	chr6	42774632	42774832	-	1	NA	NA	NA	12678	NM_146986	258988	Mm.377777	NM_146986	ENSMUSG00000095236	Olfr38	18A|MOR257-2	olfactory receptor 38	protein-coding	0.020000	0.398010	
mm_12494.1	chr2	71787003	71787203	+	1	NA	NA	NA	164	NM_001277970	16403	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	0.145000	0.800995	
mm_136855.1	chr17	12798889	12799089	+	1	NA	NA	NA	-29283	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.005000	0.452736	-3(GGCCCTTAAGGC,-,0.00),89(GCTTATATATTG,+,0.00)
mm_107269.1	chr12	29533186	29533386	+	1	NA	NA	NA	-1619	NM_001093776	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.030000	0.597015	
mm_134724.1	chr16	22898766	22898966	-	1	NA	NA	NA	-4480	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.050000	0.616915	
mm_129476.1	chr15	78718435	78718635	-	1	NA	NA	NA	-422	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0.145000	0.761194	
mm_64034.1	chr7	140769977	140770177	+	1	NA	NA	NA	6245	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.005000	0.363184	
mm_10795.1	chr2	24349428	24349628	+	1	NA	NA	NA	4157	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.025000	0.522388	61(CCCCTTATAGTC,+,0.00)
mm_164679.1	chr17	46680840	46681040	-	1	NA	NA	NA	-10	NM_027910	71765	Mm.254784	NM_027910	ENSMUSG00000063576	Klhdc3	1300011D16Rik|Peas	kelch domain containing 3	protein-coding	0.080000	0.631841	
mm_120408.1	chr14	65172247	65172447	+	1	NA	NA	NA	-74241	NM_018788	54616	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.020000	0.557214	
mm_33986.1	chr4	137719422	137719622	+	1	NA	NA	NA	-4939	NR_138592	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.015000	0.542289	
mm_113816.1	chr13	46725166	46725366	+	1	NA	NA	NA	2583	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.000000	0.442786	
mm_111758.1	chr12	103958807	103959007	-	1	NA	NA	NA	-2010	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	0.005000	0.577114	
mm_128272.1	chr15	36794104	36794304	-	1	NA	NA	NA	334	NM_011740	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.095000	0.671642	21(AGCCTTAAAAGG,-,0.00),22(GCCTTAAAAGGT,+,0.00),23(CCTTAAAAGGTC,+,0.00)
mm_123869.1	chr14	72584723	72584923	-	1	NA	NA	NA	125180	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.025000	0.442786	
mm_4705.1	chr1	180893008	180893208	+	1	NA	NA	NA	0	NM_177099	320202	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0.020000	0.582090	32(ACTTTTAGGGAC,+,0.00)
mm_67591.1	chr7	83655395	83655595	-	1	NA	NA	NA	23478	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.010000	0.492537	
mm_20951.1	chr2	151729471	151729671	-	1	NA	NA	NA	11739	NM_212446	228769	Mm.146984	NM_144889	ENSMUSG00000032869	Psmf1	AW048666|BC012260|PI31	proteasome (prosome, macropain) inhibitor subunit 1	protein-coding	0.020000	0.532338	
mm_64056.1	chr7	140847689	140847889	+	1	NA	NA	NA	-127	NM_027019	69287	Mm.56404	NM_027019	ENSMUSG00000025482	Odf3	1700011O04Rik|SHIPPO1	outer dense fiber of sperm tails 3	protein-coding	0.005000	0.542289	49(TCCTTTTTAGGG,-,0.00),51(CTTTTTAGGGAG,+,0.00)
mm_73755.1	chr8	114973283	114973483	+	1	NA	NA	NA	533731	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.025000	0.507463	
mm_56284.1	chr6	91411268	91411468	-	1	NA	NA	NA	1	NM_009527	22421	Mm.56964	NM_009527	ENSMUSG00000030093	Wnt7a	AI849442|Wnt-7a|px|tw	wingless-type MMTV integration site family, member 7A	protein-coding	0.150000	0.786070	
mm_7365.1	chr1	106713820	106714020	-	1	NA	NA	NA	370	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.090000	0.641791	
mm_102011.1	chr11	51606493	51606693	-	1	NA	NA	NA	288	NM_001048061	15384	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.170000	0.781095	
mm_138434.1	chr17	35108198	35108398	+	1	NA	NA	NA	-2	NM_148947	114652	Mm.222643	NM_148947	ENSMUSG00000034482	Ly6g5c	G5c|NG33	lymphocyte antigen 6 complex, locus G5C	protein-coding	0.010000	0.606965	3(TGCTTTTTATGG,-,0.00),5(CTTTTTATGGCA,+,0.00)
mm_110084.1	chr12	24681754	24681954	-	1	NA	NA	NA	-59	NM_001161807	12879	Mm.52265	NM_138686	ENSMUSG00000062563	Cys1	2900006B19Rik|AV218859|Ccap|ck|cpk	cystin 1	protein-coding	0.030000	0.616915	
mm_163261.1	chr11	112785188	112785388	+	1	NA	NA	NA	3078	NM_011448	20682	Mm.286407	NM_011448	ENSMUSG00000000567	Sox9	2010306G03Rik|AV220920|mKIAA4243	SRY (sex determining region Y)-box 9	protein-coding	0.050000	0.606965	
mm_145021.1	chr18	38993056	38993256	+	1	NA	NA	NA	11	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.080000	0.691542	
mm_54070.1	chr6	14754645	14754845	-	1	NA	NA	NA	529	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	0.035000	0.422886	
mm_67707.1	chr7	89941055	89941255	-	1	NA	NA	NA	49	NM_001291289	67669	Mm.28679	NM_026304	ENSMUSG00000062797	Hikeshi	0610007P06Rik|1110002N09Rik|l(7)6Rn|l7Rn6	heat shock protein nuclear import factor	protein-coding	0.045000	0.512438	
mm_76510.1	chr8	86885221	86885421	-	1	NA	NA	NA	-63	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.145000	0.721393	
mm_25682.1	chr3	122173665	122173865	+	1	NA	NA	NA	-71792	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.020000	0.457711	
mm_125051.1	chr15	25843174	25843374	+	1	NA	NA	NA	-24	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.155000	0.781095	
mm_35975.1	chr4	53403469	53403669	-	1	NA	NA	NA	-36844	NM_001159633	100434	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.040000	0.527363	
mm_57053.1	chr6	122466476	122466676	-	1	NA	NA	NA	19729	NM_027664	108653	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	0.015000	0.512438	
mm_74227.1	chr8	124197014	124197214	+	1	NA	NA	NA	-34280	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0.015000	0.512438	
mm_84166.1	chr9	59680701	59680901	-	1	NA	NA	NA	24433	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.045000	0.601990	
mm_103124.1	chr11	70220603	70220803	-	1	NA	NA	NA	291	NM_172371	69309	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	0.050000	0.621891	
mm_142394.1	chr17	44880783	44880983	-	1	NA	NA	NA	2	NM_029257	75341	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0.010000	0.452736	
mm_68005.1	chr7	100938709	100938909	-	1	NA	NA	NA	-6648	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.045000	0.577114	
mm_24430.1	chr3	90541064	90541264	+	1	NA	NA	NA	-59	NM_026416	67860	Mm.331185	NM_026416	ENSMUSG00000074457	S100a16	2300002L21Rik|AI325039|AI663996|DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding	0.030000	0.572139	
mm_35016.1	chr4	3678906	3679106	-	1	NA	NA	NA	885	NM_010747	17096	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.050000	0.557214	
mm_108744.1	chr12	88725501	88725701	+	1	NA	NA	NA	-68903	NM_001198587	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.030000	0.462687	29(GCTTATATAAGG,+,0.00),29(GCTTATATAAGG,-,0.00)
mm_5827.1	chr1	52799452	52799652	-	1	NA	NA	NA	18136	NM_008384	16329	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	0.010000	0.522388	
mm_32965.1	chr4	119895357	119895557	+	1	NA	NA	NA	80779	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.005000	0.447761	
mm_17912.1	chr2	35367621	35367821	-	1	NA	NA	NA	8	NM_029463	75859	Mm.159604	NM_029463	ENSMUSG00000026882	4930568D16Rik	Ggta1l1	RIKEN cDNA 4930568D16 gene	protein-coding	0.010000	0.412935	
mm_4830.1	chr1	186512007	186512207	+	1	NA	NA	NA	46574	NR_131124	320449	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.005000	0.472637	
mm_128096.1	chr15	27840570	27840770	-	1	NA	NA	NA	-159128	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.020000	0.522388	
mm_159606.1	chr4	129991971	129992171	+	1	NA	NA	NA	17	NM_001290715	230775	Mm.262241	NM_173071	ENSMUSG00000028782	Adgrb2	Bai2	adhesion G protein-coupled receptor B2	protein-coding	0.030000	0.616915	
mm_44124.1	chr5	149636412	149636612	+	1	NA	NA	NA	-176	NM_001347534	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.070000	0.601990	
mm_14143.1	chr2	126545586	126545786	+	1	NA	NA	NA	-7338	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0.010000	0.323383	
mm_89594.1	chr10	95940963	95941163	+	1	NA	NA	NA	400	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.125000	0.771144	
mm_3202.1	chr1	135818722	135818922	+	1	NA	NA	NA	224	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding	0.140000	0.761194	
mm_75018.1	chr8	31067735	31067935	-	1	NA	NA	NA	-21827	NM_025869	66959	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0.010000	0.477612	
mm_49175.1	chr6	14901459	14901659	+	1	NA	NA	NA	210	NM_053242	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.145000	0.741294	21(GCATTTATGCCG,+,0.00)
mm_128918.1	chr15	73734999	73735199	-	1	NA	NA	NA	10169	NM_001166388	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.045000	0.611940	
mm_127483.1	chr15	101274586	101274786	+	1	NA	NA	NA	7840	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.015000	0.402985	
mm_155239.1	chrX	57212070	57212270	+	1	NA	NA	NA	27	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.015000	0.452736	
mm_157941.1	chrX	85776443	85776643	-	1	NA	NA	NA	276	NM_001294140	14933	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	0.060000	0.641791	
mm_154324.1	chrM	2275	2475	+	1	NA	NA	NA	NA	NA									0.030000	0.378109	13(TCCTATTTAAGA,-,0.00),88(AGCTATTAATGG,-,0.00)
mm_159596.1	chr4	126565943	126566143	+	1	NA	NA	NA	6183	NR_106067	102465673		NR_106067	ENSMUSG00000098831	Mir7119	Gm27560|mmu-mir-7119	microRNA 7119	ncRNA	0.020000	0.517413	
mm_27442.1	chr3	51796427	51796627	-	1	NA	NA	NA	135348	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.040000	0.567164	
mm_27375.1	chr3	50443361	50443561	-	1	NA	NA	NA	152	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.040000	0.542289	
mm_70979.1	chr8	27175215	27175415	+	1	NA	NA	NA	-669	NM_001080813	75767	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.040000	0.532338	
mm_68397.1	chr7	109557368	109557568	-	1	NA	NA	NA	37336	NR_028079	100302499	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	0.000000	0.417910	
mm_18998.1	chr2	76868355	76868555	-	1	NA	NA	NA	114092	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.040000	0.487562	
mm_75712.1	chr8	68905590	68905790	-	1	NA	NA	NA	25135	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.000000	0.318408	
mm_120655.1	chr14	70531585	70531785	+	1	NA	NA	NA	864	NM_145219	213469	Mm.41708	NM_145219	ENSMUSG00000033595	Lgi3	AI841179|AW049851	leucine-rich repeat LGI family, member 3	protein-coding	0.005000	0.592040	
mm_130172.1	chr15	93336379	93336579	-	1	NA	NA	NA	456	NR_028315	67057	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0.155000	0.786070	
mm_76213.1	chr8	83442562	83442762	-	1	NA	NA	NA	0	NM_001285992	56367	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	0.065000	0.557214	
mm_171542.1	chr4	147013087	147013287	+	1	NA	NA	NA	-8663	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.040000	0.507463	-30(GTGTATATAAGC,-,0.00)
mm_158118.1	chrX	102251763	102251963	-	1	NA	NA	NA	-20	NM_007709	12705	Mm.2390	NM_007709	ENSMUSG00000051159	Cited1	AI316840|AU019144|Msg1	Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1	protein-coding	0.060000	0.626866	
mm_4166.1	chr1	171051095	171051295	+	1	NA	NA	NA	8208	NM_010188	14131	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	0.005000	0.388060	
mm_13336.1	chr2	102786915	102787115	+	1	NA	NA	NA	80577	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.000000	0.427861	
mm_75297.1	chr8	41054774	41054974	-	1	NA	NA	NA	-78	NM_001005864	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.040000	0.527363	
mm_39551.1	chr5	21786662	21786862	+	1	NA	NA	NA	1479	NM_011188	19181	Mm.2462	NM_011188	ENSMUSG00000028932	Psmc2	-	proteasome (prosome, macropain) 26S subunit, ATPase 2	protein-coding	0.090000	0.621891	
mm_118106.1	chr13	103920483	103920683	-	1	NA	NA	NA	3	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.145000	0.736318	
mm_55327.1	chr6	55680978	55681178	-	1	NA	NA	NA	185	NM_009717	11922	Mm.5106	NM_009717	ENSMUSG00000037984	Neurod6	Atoh2|Math-2|Math2|Nex|Nex1m|bHLHa2	neurogenic differentiation 6	protein-coding	0.015000	0.457711	-18(CTTTTTAGAGAT,+,0.00)
mm_102820.1	chr11	69011884	69012084	-	1	NA	NA	NA	-3524	NM_001159519	237823	Mm.340288	NM_001159519	ENSMUSG00000020899	Pfas	4432409B16Rik|FGAMS|FGAR-AT|FGARAT|Gm18|PURL|Sofa	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)	protein-coding	0.010000	0.402985	
mm_114540.1	chr13	73763096	73763296	+	1	NA	NA	NA	-501	NM_011390	20499	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.015000	0.592040	
mm_156220.1	chrX	134756490	134756690	+	1	NA	NA	NA	22	NM_027870	71703	Mm.67949	NM_027870	ENSMUSG00000049047	Armcx3	1200004E24Rik|AI450003|ALEX3	armadillo repeat containing, X-linked 3	protein-coding	0.060000	0.606965	
mm_168622.1	chr1	179464512	179464712	-	1	NA	NA	NA	53391	NM_027188	69726	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.010000	0.442786	85(GTGTTTTAAAGA,-,0.00)
mm_91488.1	chr10	37135505	37135705	-	1	NA	NA	NA	3321	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.005000	0.338308	
mm_74128.1	chr8	123186311	123186511	+	1	NA	NA	NA	176	NM_007876	13479	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	0.030000	0.597015	-88(CCCTTTTAAAGA,-,0.00),-87(CCTTTTAAAGAG,+,0.00)
mm_90896.1	chr10	10474943	10475143	-	1	NA	NA	NA	-2729	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.010000	0.532338	
mm_73969.1	chr8	120488678	120488878	+	1	NA	NA	NA	-88	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.070000	0.577114	
mm_115455.1	chr13	118790383	118790583	+	1	NA	NA	NA	75784	NM_008002	14165	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	0.000000	0.373134	
mm_132781.1	chr16	44811653	44811853	+	1	NA	NA	NA	-8975	NM_207244	239849	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0.010000	0.462687	
mm_110221.1	chr12	28635735	28635935	-	1	NA	NA	NA	118	NM_011300	20115	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	0.105000	0.651741	
mm_35030.1	chr4	4019544	4019744	-	1	NA	NA	NA	19	NM_181989	242285	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	0.020000	0.527363	
mm_54014.1	chr6	8259026	8259226	-	1	NA	NA	NA	15	NM_026632	68240	Mm.29073	NM_026632	ENSMUSG00000012483	Rpa3	14kDa|C330026P08Rik	replication protein A3	protein-coding	0.095000	0.597015	
mm_53857.1	chr6	149309315	149309515	+	1	NA	NA	NA	1	NM_001289662	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.085000	0.691542	
mm_31337.1	chr4	46468622	46468822	+	1	NA	NA	NA	17796	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.015000	0.547264	
mm_9831.1	chr1	182749082	182749282	-	1	NA	NA	NA	-2	NM_001033547	433386	Mm.338103	NM_001033547	ENSMUSG00000043429	Ccdc185	4922505E12Rik	coiled-coil domain containing 185	protein-coding	0.035000	0.601990	-98(GGCCTTTAAAGA,-,0.00),-97(GCCTTTAAAGAC,+,0.00),-97(GCCTTTAAAGAC,-,0.00),-96(CCTTTAAAGACC,+,0.00)
mm_132421.1	chr16	35211296	35211496	+	1	NA	NA	NA	55760	NM_001012765	224129	Mm.41137	NM_001012765	ENSMUSG00000022840	Adcy5	AW121902|Ac5	adenylate cyclase 5	protein-coding	0.005000	0.477612	
mm_127298.1	chr15	100199188	100199388	+	1	NA	NA	NA	-11252	NR_037311	100499528		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0.020000	0.462687	-26(CACTTTAAATAG,-,0.00)
mm_157910.1	chrX	78477597	78477797	-	1	NA	NA	NA	106108	NM_001164275	546336	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	0.000000	0.328358	
mm_151674.1	chr19	4190980	4191180	-	1	NA	NA	NA	-33	NM_178650	108995	Mm.288312	NM_178650	ENSMUSG00000040247	Tbc1d10c	1810062O14Rik|AI428527	TBC1 domain family, member 10c	protein-coding	0.010000	0.646766	
mm_164889.1	chr18	61553484	61553684	+	1	NA	NA	NA	-1998	NM_146087	93687	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0.000000	0.303483	
mm_71567.1	chr8	54077044	54077244	+	1	NA	NA	NA	-388	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding	0.090000	0.706468	
mm_33573.1	chr4	132308578	132308778	+	1	NA	NA	NA	0	NR_029468	100039864	Mm.258912	NR_029468	ENSMUSG00000086290	Snhg12	2310005L22Rik	small nucleolar RNA host gene 12	ncRNA	0.075000	0.577114	
mm_114352.1	chr13	60939867	60940067	+	1	NA	NA	NA	1968	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding	0.005000	0.412935	
mm_79630.1	chr9	59315067	59315267	+	1	NA	NA	NA	23595	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.025000	0.492537	
mm_27823.1	chr3	79078808	79079008	-	1	NA	NA	NA	65979	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.005000	0.358209	
mm_47683.1	chr5	128989828	128990028	-	1	NA	NA	NA	18644	NM_001286034	13852	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	0.010000	0.492537	
mm_130149.1	chr15	91049745	91049945	-	1	NA	NA	NA	106	NM_001109041	16564	Mm.41379	NM_016705	ENSMUSG00000022629	Kif21a	-	kinesin family member 21A	protein-coding	0.145000	0.776119	
mm_166025.1	chr4	124802506	124802706	+	1	NA	NA	NA	57	NM_008636	17764	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	0.070000	0.691542	
mm_117247.1	chr13	64363997	64364197	-	1	NA	NA	NA	6423	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.025000	0.467662	
mm_168343.1	chr11	120784179	120784379	+	1	NA	NA	NA	7	NM_001177874	209318	Mm.30195	NM_145370	ENSMUSG00000025156	Gps1	Cops1|Csn1|R75577|Sgn1	G protein pathway suppressor 1	protein-coding	0.140000	0.726368	-69(GCCCCTTTAAGA,-,0.00),-66(CCTTTAAGAGTG,+,0.00)
mm_126462.1	chr15	80977713	80977913	+	1	NA	NA	NA	48	NM_134091	105835	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.115000	0.721393	
mm_89447.1	chr10	93124465	93124665	+	1	NA	NA	NA	-36311	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.025000	0.457711	81(CCTTTAAAATGC,+,0.00)
mm_73182.1	chr8	95081146	95081346	+	1	NA	NA	NA	45	NM_028805	74187	Mm.28382	NM_028805	ENSMUSG00000031787	Katnb1	2410003J24Rik|KAT	katanin p80 (WD40-containing) subunit B 1	protein-coding	0.035000	0.587065	
mm_16838.1	chr2	11499820	11500020	-	1	NA	NA	NA	2170	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.010000	0.388060	27(GGGTTTTAAAAG,-,0.00),28(GGTTTTAAAAGC,-,0.00),29(GTTTTAAAAGCA,+,0.00)
mm_152173.1	chr19	7341711	7341911	-	1	NA	NA	NA	49	NM_001080389	13728	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.090000	0.587065	
mm_104674.1	chr11	97664661	97664861	-	1	NA	NA	NA	1349	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.010000	0.512438	
mm_107869.1	chr12	69907786	69907986	+	1	NA	NA	NA	-14723	NM_201519	399510	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	0.050000	0.611940	
mm_104056.1	chr11	86544668	86544868	-	1	NA	NA	NA	39	NM_028259	72508	Mm.394280	NM_028259	ENSMUSG00000020516	Rps6kb1	2610318I15Rik|4732464A07Rik|70kDa|AA959758|AI256796|AI314060|S6K1|p70/85s6k|p70s6k	ribosomal protein S6 kinase, polypeptide 1	protein-coding	0.095000	0.641791	
mm_99930.1	chr11	110997426	110997626	+	1	NA	NA	NA	39	NM_001252209	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.020000	0.497512	
mm_145976.1	chr18	67934649	67934849	+	1	NA	NA	NA	1492	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.010000	0.343284	
mm_68413.1	chr7	109665598	109665798	-	1	NA	NA	NA	-38039	NM_020616	57373	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	0.000000	0.298507	-45(CTTTTAATACTC,+,0.00)
mm_159612.1	chr4	132144353	132144553	-	1	NA	NA	NA	33	NM_013622	18386	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	0.145000	0.776119	
mm_10995.1	chr2	26339338	26339538	+	1	NA	NA	NA	12672	NM_026828	52838	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	0.015000	0.567164	
mm_169927.1	chr16	57391415	57391615	-	1	NA	NA	NA	38238	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.110000	0.691542	
mm_109012.1	chr12	103355187	103355387	+	1	NA	NA	NA	714	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.010000	0.512438	
mm_60502.1	chr7	44479286	44479486	+	1	NA	NA	NA	-5131	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.015000	0.522388	
mm_137340.1	chr17	25136343	25136543	+	1	NA	NA	NA	-188	NM_001317404	26373	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.005000	0.582090	
mm_63860.1	chr7	135683698	135683898	+	1	NA	NA	NA	-31484	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.025000	0.542289	
mm_28389.1	chr3	90017511	90017711	-	1	NA	NA	NA	-6401	NR_106129	102465771		NR_106129	ENSMUSG00000098397	Mir7669	Gm27996|mmu-mir-7669	microRNA 7669	ncRNA	0.000000	0.323383	
mm_162044.1	chr19	59219782	59219982	+	1	NA	NA	NA	234	NM_207261	332396	Mm.329947	NM_207261	ENSMUSG00000040901	Kcnk18	Gm781|Tresk|Tresk-2|Trik	potassium channel, subfamily K, member 18	protein-coding	0.035000	0.606965	
mm_130901.1	chr15	102405459	102405659	-	1	NA	NA	NA	-757	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.075000	0.621891	
mm_53088.1	chr6	125001989	125002189	+	1	NA	NA	NA	3479	NM_001145926	319352	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.005000	0.621891	
mm_55779.1	chr6	81910359	81910559	-	1	NA	NA	NA	341	NR_046040	74220	Mm.490521	NR_046040	ENSMUSG00000101404	1700009C05Rik	-	RIKEN cDNA 1700009C05 gene	ncRNA	0.065000	0.552239	
mm_69270.1	chr7	127929878	127930078	-	1	NA	NA	NA	135	NM_133351	76560	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0.015000	0.572139	
mm_19920.1	chr2	115919686	115919886	-	1	NA	NA	NA	144833	NM_001346044	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.010000	0.373134	
mm_149651.1	chr19	18670652	18670852	+	1	NA	NA	NA	-28	NM_026120	67383	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	0.135000	0.691542	
mm_95590.1	chr11	53330516	53330716	+	1	NA	NA	NA	5927	NM_026479	67966	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0.015000	0.467662	
mm_82277.1	chr9	7355321	7355521	-	1	NA	NA	NA	8047	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.422886	
mm_31230.1	chr4	44300871	44301071	+	1	NA	NA	NA	54	NM_010790	17279	Mm.268668	NM_010790	ENSMUSG00000035683	Melk	AI327312|MPK38|mKIAA0175	maternal embryonic leucine zipper kinase	protein-coding	0.060000	0.621891	
mm_147616.1	chr18	57533618	57533818	-	1	NA	NA	NA	34	NR_015541	74916	Mm.444721	NR_015541	ENSMUSG00000085800	1700066O22Rik	4930500F21Rik|4930515O13Rik|4930542C11Rik	RIKEN cDNA 1700066O22 gene	ncRNA	0.015000	0.452736	
mm_51491.1	chr6	83056921	83057121	+	1	NA	NA	NA	-823	NM_033606	93838	Mm.140332	NM_033606	ENSMUSG00000009145	Dqx1	2310066E11Rik	DEAQ RNA-dependent ATPase	protein-coding	0.010000	0.577114	
mm_98561.1	chr11	95339832	95340032	+	1	NA	NA	NA	2914	NM_172543	215512	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0.035000	0.462687	-34(TCGTTTAAAGGG,-,0.00)
mm_135523.1	chr16	48874393	48874593	-	1	NA	NA	NA	1885	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.005000	0.353234	
mm_44211.1	chr5	4104537	4104737	-	1	NA	NA	NA	60	NM_020010	13121	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	0.095000	0.646766	
mm_117363.1	chr13	70827346	70827546	-	1	NA	NA	NA	14365	NM_172053	271127	Mm.115970	NM_172053	ENSMUSG00000049538	Adamts16	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	protein-coding	0.005000	0.402985	
mm_73157.1	chr8	94995506	94995706	+	1	NA	NA	NA	11207	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.010000	0.577114	
mm_118562.1	chr14	17981794	17981994	+	1	NA	NA	NA	250	NM_009380	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.035000	0.522388	
mm_114375.1	chr13	63116955	63117155	+	1	NA	NA	NA	-122974	NR_110520	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.010000	0.497512	
mm_37396.1	chr4	121098157	121098357	-	1	NA	NA	NA	-14	NM_172700	230709	Mm.34399	NM_172700	ENSMUSG00000043207	Zmpste24	A530043O15Rik|D030046F19|FACE1|Face-1|MADB|STE24|Ste24p	zinc metallopeptidase, STE24	protein-coding	0.040000	0.532338	
mm_51609.1	chr6	84185660	84185860	+	1	NA	NA	NA	166374	NM_021469	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.010000	0.467662	
mm_82922.1	chr9	35099014	35099214	-	1	NA	NA	NA	-17614	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.010000	0.492537	
mm_101639.1	chr11	36432904	36433104	-	1	NA	NA	NA	-452915	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.030000	0.477612	-36(CCTTTAAAATCC,+,0.00),-26(CCTTTTATGGAG,+,0.00)
mm_142522.1	chr17	46282909	46283109	-	1	NA	NA	NA	17	NM_001252475	74094	Mm.284594	NM_028751	ENSMUSG00000012296	Tjap1	0610041D19Rik|AI415281|AW121008|Pilt|Tjp4	tight junction associated protein 1	protein-coding	0.095000	0.686567	
mm_79176.1	chr9	47893183	47893383	+	1	NA	NA	NA	-75075	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.020000	0.482587	
mm_73307.1	chr8	105170644	105170844	+	1	NA	NA	NA	70	NM_001161458	12400	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0.130000	0.781095	
mm_101466.1	chr11	30573030	30573230	-	1	NA	NA	NA	76266	NM_029344	75572	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	0.035000	0.447761	-42(CGCCTTTAAAGC,-,0.00),-41(GCCTTTAAAGCC,+,0.00),-40(CCTTTAAAGCCG,+,0.00)
mm_120161.1	chr14	60732902	60733102	+	1	NA	NA	NA	98	NM_001310594	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.050000	0.592040	
mm_145618.1	chr18	61105767	61105967	+	1	NA	NA	NA	295	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.030000	0.522388	
mm_25743.1	chr3	122984608	122984808	+	1	NA	NA	NA	-261	NM_133857	99526	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	0.150000	0.741294	
mm_149156.1	chr19	9015614	9015814	+	1	NA	NA	NA	-2190	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.000000	0.398010	
mm_82593.1	chr9	21239225	21239425	-	1	NA	NA	NA	7	NM_016679	50868	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.095000	0.736318	
mm_104802.1	chr11	98774995	98775195	-	1	NA	NA	NA	282	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.025000	0.537313	
mm_127226.1	chr15	99399686	99399886	+	1	NA	NA	NA	6567	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.025000	0.537313	
mm_50165.1	chr6	41553480	41553680	+	1	NA	NA	NA	31804	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.015000	0.452736	
mm_56400.1	chr6	97060314	97060514	-	1	NA	NA	NA	-3	NM_177233	320701	Mm.131700	NM_177233	ENSMUSG00000046500	Fam19a4	C130034I18Rik|Fam19a4 Tafa-4|Tafa-4	family with sequence similarity 19, member A4	protein-coding	0.045000	0.636816	
mm_31236.1	chr4	44701521	44701721	+	1	NA	NA	NA	-1179	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0.020000	0.587065	
mm_149912.1	chr19	26605041	26605241	+	1	NA	NA	NA	-19	NM_011416	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.080000	0.582090	
mm_103432.1	chr11	75795935	75796135	-	1	NA	NA	NA	25	NM_007873	13447	Mm.5137	NM_007873	ENSMUSG00000020848	Doc2b	-	double C2, beta	protein-coding	0.135000	0.800995	
mm_67332.1	chr7	79742891	79743091	-	1	NA	NA	NA	34	NM_011068	18631	Mm.20615	NM_011068	ENSMUSG00000030545	Pex11a	PEX11alpha	peroxisomal biogenesis factor 11 alpha	protein-coding	0.090000	0.671642	
mm_150407.1	chr19	36879170	36879370	+	1	NA	NA	NA	40329	NM_028263	72514	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0.025000	0.532338	
mm_51858.1	chr6	90466187	90466387	+	1	NA	NA	NA	3661	NM_023184	66277	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.020000	0.562189	
mm_53356.1	chr6	129351330	129351530	+	1	NA	NA	NA	1186	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.000000	0.422886	
mm_148632.1	chr19	5460523	5460723	+	1	NA	NA	NA	16	NM_021438	58249	Mm.329656	NM_021438	ENSMUSG00000024911	Fibp	2010004G08Rik|2010005N21Rik|3010027N18Rik	fibroblast growth factor (acidic) intracellular binding protein	protein-coding	0.105000	0.641791	
mm_139397.1	chr17	52304430	52304630	+	1	NA	NA	NA	-298179	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.010000	0.507463	
mm_35224.1	chr4	19680268	19680468	-	1	NA	NA	NA	28636	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.000000	0.248756	
mm_56952.1	chr6	119992406	119992606	-	1	NA	NA	NA	41805	NR_030487	735290		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	0.015000	0.388060	4(ATCCTTAAAGGG,-,0.00),6(CCTTAAAGGGCT,+,0.00)
mm_76900.1	chr8	105826219	105826419	-	1	NA	NA	NA	1031	NM_145824	74334	Mm.4206	NM_145824	ENSMUSG00000037415	Ranbp10	4432417N03Rik	RAN binding protein 10	protein-coding	0.015000	0.442786	
mm_62521.1	chr7	102230059	102230259	+	1	NA	NA	NA	7131	NR_111937	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.030000	0.621891	
mm_53741.1	chr6	145145378	145145578	+	1	NA	NA	NA	23739	NM_008511	16970	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.015000	0.437811	
mm_104021.1	chr11	85775572	85775772	-	1	NA	NA	NA	8	NR_046194	78420	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA	0.015000	0.562189	
mm_86804.1	chr10	20320049	20320249	+	1	NA	NA	NA	7680	NM_001025393	72567	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0.000000	0.323383	
mm_69984.1	chr7	142380795	142380995	-	1	NA	NA	NA	6975	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.015000	0.487562	
mm_130235.1	chr15	96474358	96474558	-	1	NA	NA	NA	-13615	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.035000	0.388060	
mm_43687.1	chr5	138976895	138977095	+	1	NA	NA	NA	17958	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.015000	0.353234	
mm_22212.1	chr2	174285074	174285274	-	1	NA	NA	NA	854	NM_022000	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.090000	0.686567	
mm_530.1	chr1	37872252	37872452	+	1	NA	NA	NA	146	NM_001037918	623661	Mm.138000	NM_001037918	ENSMUSG00000037216	Lipt1	EG623661	lipoyltransferase 1	protein-coding	0.060000	0.572139	
mm_92814.1	chr10	81427051	81427251	-	1	NA	NA	NA	22	NM_008688	18029	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.120000	0.756219	
mm_121238.1	chr14	103056122	103056322	+	1	NA	NA	NA	9210	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.015000	0.402985	
mm_85653.1	chr9	107658877	107659077	-	1	NA	NA	NA	8422	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.015000	0.601990	
mm_18860.1	chr2	75703883	75704083	-	1	NA	NA	NA	680	NR_132727	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.110000	0.676617	
mm_155918.1	chrX	102050714	102050914	+	1	NA	NA	NA	20493	NM_001278534	331474	Mm.23297	NM_183318	ENSMUSG00000049191	Rgag4	6430402L03Rik|Mar5|Mart5|mKIAA2001	retrotransposon gag domain containing 4	protein-coding	0.020000	0.522388	
mm_40616.1	chr5	64803390	64803590	+	1	NA	NA	NA	-33	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.075000	0.746269	
mm_133800.1	chr16	95297795	95297995	+	1	NA	NA	NA	40337	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.005000	0.437811	
mm_127939.1	chr15	10589068	10589268	-	1	NA	NA	NA	-11125	NR_033541	100038608	Mm.450744	NR_033541		Gm10389	ENSMUSG00000072658	predicted gene 10389	ncRNA	0.020000	0.402985	
mm_38084.1	chr4	134154301	134154501	-	1	NA	NA	NA	-25648	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.010000	0.552239	
mm_153940.1	chr19	47464507	47464707	-	1	NA	NA	NA	-196	NM_008018	14218	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.130000	0.825871	
mm_127664.1	chr15	102520728	102520928	+	1	NA	NA	NA	2636	NM_009319	21357	Mm.291485	NM_009319	ENSMUSG00000023051	Tarbp2	Prbp|TRBP	TARBP2, RISC loading complex RNA binding subunit	protein-coding	0.000000	0.522388	
mm_158803.1	chrX	167255041	167255241	-	1	NA	NA	NA	9188	NM_001313761	170744	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	0.010000	0.402985	-73(TCATATAAAGGC,+,0.00)
mm_136762.1	chr17	8801614	8801814	+	1	NA	NA	NA	-31	NM_011866	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.095000	0.731343	
mm_173283.1	chrY	1641575	1641775	+	1	NA	NA	NA	-181893	NM_148943	107868	Mm.347376	NM_148943	ENSMUSG00000069044	Usp9y	Dffry|Fafl2	ubiquitin specific peptidase 9, Y chromosome	protein-coding	0.050000	0.606965	
mm_68489.1	chr7	111074396	111074596	-	1	NA	NA	NA	8534	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.005000	0.348259	
mm_105212.1	chr11	102163455	102163655	-	1	NA	NA	NA	-7148	NM_029649	76547	Mm.46529	NM_029649	ENSMUSG00000020921	Tmem101	2610511E22Rik	transmembrane protein 101	protein-coding	0.000000	0.283582	
mm_33942.1	chr4	136952928	136953128	+	1	NA	NA	NA	3788	NM_007939	13842	Mm.1390	NM_007939	ENSMUSG00000028661	Epha8	AW047546|Eek|Hek3|mKIAA1459	Eph receptor A8	protein-coding	0.015000	0.462687	
mm_168549.1	chr1	162893278	162893478	-	1	NA	NA	NA	5334	NM_018881	55990	Mm.10929	NM_018881	ENSMUSG00000040170	Fmo2	2310008D08Rik|2310042I22Rik|AW107733	flavin containing monooxygenase 2	protein-coding	0.000000	0.482587	
mm_94061.1	chr10	128368794	128368994	-	1	NA	NA	NA	1143	NM_001081040	210582	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.150000	0.781095	
mm_56508.1	chr6	99339374	99339574	-	1	NA	NA	NA	-72959	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.020000	0.487562	
mm_160868.1	chr11	62438359	62438559	-	1	NA	NA	NA	56	NM_001252313	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.015000	0.412935	
mm_77406.1	chr8	120537674	120537874	-	1	NA	NA	NA	365	NM_001145896	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.135000	0.746269	
mm_1829.1	chr1	82718835	82719035	+	1	NA	NA	NA	-5955	NM_001310697	75734	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	0.015000	0.318408	
mm_70635.1	chr8	13869607	13869807	+	1	NA	NA	NA	66	NM_181854	101994	Mm.289346	NM_181854	ENSMUSG00000047710	Champ1	AA675043|AI116001|D8Ertd457e|D8Ertd569e|Zfp828|Znf828|mKIAA1802	chromosome alignment maintaining phosphoprotein 1	protein-coding	0.105000	0.696517	
mm_145885.1	chr18	65580677	65580877	+	1	NA	NA	NA	547	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.180000	0.830846	
mm_16343.1	chr2	174345322	174345522	+	1	NA	NA	NA	15333	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.050000	0.582090	
mm_8519.1	chr1	154816865	154817065	-	1	NA	NA	NA	-91045	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.015000	0.517413	
mm_59025.1	chr7	19291037	19291237	+	1	NA	NA	NA	68	NM_001025364	20167	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0.025000	0.587065	
mm_159225.1	chr2	130295774	130295974	+	1	NA	NA	NA	-65	NM_001110513	228598	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	0.125000	0.741294	
mm_20123.1	chr2	121271219	121271419	-	1	NA	NA	NA	88	NM_001290830	27223	Mm.215389	NM_013735	ENSMUSG00000043909	Trp53bp1	53BP1|Tp53bp1|m53BP1|p53BP1	transformation related protein 53 binding protein 1	protein-coding	0.110000	0.701493	
mm_6991.1	chr1	86357327	86357527	-	1	NA	NA	NA	-1100	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.000000	0.422886	-63(GGGTATAAAGGA,-,0.00)
mm_25442.1	chr3	108186317	108186517	+	1	NA	NA	NA	128	NM_001287093	229715	Mm.275752	NM_146137	ENSMUSG00000050947	Amigo1	Amigo|ali2	adhesion molecule with Ig like domain 1	protein-coding	0.200000	0.840796	
mm_118415.1	chr14	7791391	7791591	+	1	NA	NA	NA	-26466	NM_001081427	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.070000	0.597015	
mm_18146.1	chr2	45066536	45066736	-	1	NA	NA	NA	-43459	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.383085	
mm_33584.1	chr4	132544608	132544808	+	1	NA	NA	NA	9149	NM_172400	68598	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	0.005000	0.437811	
mm_70091.1	chr7	142656044	142656244	-	1	NA	NA	NA	-1148	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.010000	0.592040	
mm_37156.1	chr4	117125560	117125760	-	1	NA	NA	NA	65	NR_024078	78611	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0.010000	0.606965	32(GCCTTTCTAGCC,+,0.00)
mm_115977.1	chr13	24206165	24206365	-	1	NA	NA	NA	74525	NM_001311122	68732	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0.030000	0.517413	
mm_131777.1	chr16	22895084	22895284	+	1	NA	NA	NA	-798	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.040000	0.527363	
mm_58961.1	chr7	18925821	18926021	+	1	NA	NA	NA	33	NM_001029877	384569	Mm.262724	NM_001029877	ENSMUSG00000030411	Nova2	Gm1424	neuro-oncological ventral antigen 2	protein-coding	0.130000	0.820896	
mm_146258.1	chr18	77794484	77794684	+	1	NA	NA	NA	34	NM_013831	19201	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.125000	0.726368	
mm_2732.1	chr1	128244191	128244391	+	1	NA	NA	NA	110	NM_026390	67812	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0.120000	0.701493	
mm_103814.1	chr11	83002966	83003166	-	1	NA	NA	NA	-11236	NM_172796	237886	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.010000	0.427861	
mm_171215.1	chr3	59286779	59286979	-	1	NA	NA	NA	-24048	NM_027571	70839	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	0.035000	0.572139	
mm_28566.1	chr3	93444858	93445058	-	1	NA	NA	NA	2628	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.055000	0.626866	
mm_41793.1	chr5	103753515	103753715	+	1	NA	NA	NA	-547	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.035000	0.487562	
mm_45012.1	chr5	38521394	38521594	-	1	NA	NA	NA	-19342	NM_145559	117591	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.000000	0.487562	44(GCTTTAAGACCC,+,0.00)
mm_121495.1	chr14	121878560	121878760	+	1	NA	NA	NA	54	NM_026861	68889	Mm.441151	NM_026861	ENSMUSG00000041765	Ubac2	1190008A14Rik|AW554959|Phgdhl1	ubiquitin associated domain containing 2	protein-coding	0.120000	0.756219	
mm_172687.1	chr8	57511858	57512058	+	1	NA	NA	NA	115	NM_008252	97165	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.090000	0.631841	
mm_69277.1	chr7	127981928	127982128	-	1	NA	NA	NA	11839	NM_023258	66824	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	0.005000	0.422886	
mm_42308.1	chr5	114851705	114851905	+	1	NA	NA	NA	-143	NR_105748	102466620		NR_105748	ENSMUSG00000098343	Mir6240	Gm27850|mmu-mir-6240	microRNA 6240	ncRNA	0.040000	0.577114	
mm_104907.1	chr11	99650136	99650336	-	1	NA	NA	NA	-6147	NM_029613	76444	Mm.348022	NM_029613	ENSMUSG00000045109	Krtap4-7	2310037K05Rik|KAP4.7|KRTAP4.7	keratin associated protein 4-7	protein-coding	0.005000	0.492537	-33(GGGTATAAAAGG,-,0.00)
mm_156808.1	chrX	163927551	163927751	+	1	NA	NA	NA	18634	NM_001290379	108012	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	0.000000	0.353234	
mm_82029.1	chr9	121937191	121937391	+	1	NA	NA	NA	16	NR_033553	69430	Mm.482910	NR_033553	ENSMUSG00000043773	1700048O20Rik	1700022O21Rik	RIKEN cDNA 1700048O20 gene	ncRNA	0.000000	0.552239	
mm_26648.1	chr3	153973558	153973758	+	1	NA	NA	NA	222	NM_001081263	242259	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0.120000	0.736318	
mm_93401.1	chr10	107719884	107720084	-	1	NA	NA	NA	43	NM_001081432	237523	Mm.391418	NM_001081432	ENSMUSG00000035916	Ptprq	-	protein tyrosine phosphatase, receptor type, Q	protein-coding	0.000000	0.402985	
mm_117352.1	chr13	69739328	69739528	-	1	NA	NA	NA	469	NM_001145162	76980	Mm.23960	NM_001145162	ENSMUSG00000052981	Ube2ql1	3110006E14Rik	ubiquitin-conjugating enzyme E2Q family-like 1	protein-coding	0.115000	0.736318	
mm_35204.1	chr4	19521480	19521680	-	1	NA	NA	NA	48524	NM_027769	70568	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	0.015000	0.497512	73(ACCTCTATAAGG,-,0.00)
mm_76950.1	chr8	105990634	105990834	-	1	NA	NA	NA	1039	NM_001301204	319446	Mm.248357	NM_176913	ENSMUSG00000053687	Dpep2	F630103D06Rik|MBD-2	dipeptidase 2	protein-coding	0.015000	0.547264	
mm_8090.1	chr1	135688022	135688222	-	1	NA	NA	NA	-41075	NM_007791	13007	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.120000	0.746269	
mm_124944.1	chr15	12321521	12321721	+	1	NA	NA	NA	125	NM_025673	66629	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.125000	0.731343	
mm_128094.1	chr15	27788480	27788680	-	1	NA	NA	NA	-107038	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.015000	0.517413	
mm_84868.1	chr9	78936971	78937171	-	1	NA	NA	NA	321525	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.020000	0.552239	
mm_117586.1	chr13	89661962	89662162	-	1	NA	NA	NA	80450	NM_001081249	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.010000	0.422886	
mm_141555.1	chr17	32211124	32211324	-	1	NA	NA	NA	-21675	NM_001347341	71932	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9	epoxide hydrolase 3	protein-coding	0.015000	0.462687	
mm_70329.1	chr8	4391574	4391774	+	1	NA	NA	NA	42086	NM_009138	20300	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0.030000	0.412935	
mm_29447.1	chr3	110250889	110251089	-	1	NA	NA	NA	10	NM_178891	99890	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	0.095000	0.671642	
mm_153694.1	chr19	44397194	44397394	-	1	NA	NA	NA	10415	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.015000	0.437811	
mm_5675.1	chr1	43141764	43141964	-	1	NA	NA	NA	22097	NM_010212	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.025000	0.567164	
mm_109153.1	chr12	108001953	108002153	+	1	NA	NA	NA	1361	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.095000	0.552239	
mm_47969.1	chr5	135908847	135909047	-	1	NA	NA	NA	21028	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.020000	0.393035	
mm_112197.1	chr12	113425715	113425915	-	1	NA	NA	NA	-63750	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.015000	0.482587	11(GGCTCTAAAAAG,-,0.00)
mm_153041.1	chr19	32061299	32061499	-	1	NA	NA	NA	41741	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.005000	0.437811	
mm_53524.1	chr6	136520305	136520505	+	1	NA	NA	NA	1554	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.010000	0.333333	
mm_24698.1	chr3	95124421	95124621	+	1	NA	NA	NA	7	NM_016712	50874	Mm.71935	NM_016712	ENSMUSG00000005628	Tmod4	MTMOD|Sk-Tmod	tropomodulin 4	protein-coding	0.020000	0.562189	
mm_83069.1	chr9	37613448	37613648	-	1	NA	NA	NA	172	NM_011449	20686	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	0.040000	0.477612	
mm_20797.1	chr2	144257045	144257245	-	1	NA	NA	NA	9057	NR_030762	100313519	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.020000	0.422886	
mm_88649.1	chr10	79967224	79967424	+	1	NA	NA	NA	-3400	NM_130455	170483	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	0.020000	0.611940	
mm_68186.1	chr7	104149320	104149520	-	1	NA	NA	NA	1136	NM_198624	244179	Mm.189668	NM_198624	ENSMUSG00000051437	Ubqlnl	4922504M18Rik|Gm490	ubiquilin-like	protein-coding	0.005000	0.432836	
mm_92289.1	chr10	71344822	71345022	-	1	NA	NA	NA	-73	NM_134007	52637	Mm.254114	NM_134007	ENSMUSG00000037710	Cisd1	AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding	0.135000	0.711443	
mm_40869.1	chr5	74014102	74014302	+	1	NA	NA	NA	54209	NM_177561	69727	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.005000	0.467662	
mm_60971.1	chr7	48788972	48789172	+	1	NA	NA	NA	69	NM_028031	243983	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	0.145000	0.751244	
mm_58713.1	chr7	12978250	12978450	+	1	NA	NA	NA	502	NM_001168561	269870	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	0.040000	0.537313	
mm_54560.1	chr6	37362343	37362543	-	1	NA	NA	NA	-62467	NM_001347104	320127	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.035000	0.442786	
mm_163362.1	chr12	32770787	32770987	-	1	NA	NA	NA	-49448	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.020000	0.452736	
mm_84710.1	chr9	73039522	73039722	-	1	NA	NA	NA	77	NM_018889	55981	Mm.139905	NM_018889	ENSMUSG00000079469	Pigb	Pig-b	phosphatidylinositol glycan anchor biosynthesis, class B	protein-coding	0.090000	0.666667	
mm_105489.1	chr11	106065838	106066038	-	1	NA	NA	NA	-169	NM_027346	70207	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	0.070000	0.557214	
mm_30365.1	chr3	152107099	152107299	-	1	NA	NA	NA	58701	NM_016867	54120	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.035000	0.606965	
mm_6534.1	chr1	74893016	74893216	-	1	NA	NA	NA	27	NM_021541	12958	Mm.86656	NM_021541	ENSMUSG00000006546	Cryba2	E130107M19Rik	crystallin, beta A2	protein-coding	0.060000	0.621891	
mm_4239.1	chr1	171388899	171389099	+	1	NA	NA	NA	39	NM_001005508	226652	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	0.035000	0.601990	
mm_94083.1	chr10	128493437	128493637	-	1	NA	NA	NA	349	NM_001317218	17904	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.040000	0.567164	
mm_58733.1	chr7	13029991	13030191	+	1	NA	NA	NA	4686	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.005000	0.507463	
mm_97388.1	chr11	77770783	77770983	+	1	NA	NA	NA	-6352	NM_001291213	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.010000	0.398010	
mm_156340.1	chrX	139009949	139010149	+	1	NA	NA	NA	75187	NM_177920	331535	Mm.211704	NM_177920	ENSMUSG00000031271	Serpina7	C730040N12Rik|Tbg	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7	protein-coding	0.005000	0.442786	
mm_99372.1	chr11	101984162	101984362	+	1	NA	NA	NA	529	NM_028207	72349	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	0.050000	0.562189	
mm_42339.1	chr5	114903589	114903789	+	1	NA	NA	NA	6755	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.015000	0.442786	
mm_24133.1	chr3	88215576	88215776	+	1	NA	NA	NA	78	NR_029817	387133		NR_029817	ENSMUSG00000106493	Mir9-1	Mirn9|Mirn9-1|mir-9-1|mmu-mir-9-1	microRNA 9-1	ncRNA	0.040000	0.572139	
mm_103383.1	chr11	75415048	75415248	-	1	NA	NA	NA	7475	NM_011340	20317	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.020000	0.547264	
mm_28449.1	chr3	90514261	90514461	-	1	NA	NA	NA	-31	NM_011309	20193	Mm.24662	NM_011309	ENSMUSG00000044080	S100a1	AI266795|S100|S100a	S100 calcium binding protein A1	protein-coding	0.040000	0.601990	
mm_8643.1	chr1	156430218	156430418	-	1	NA	NA	NA	-9403	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.000000	0.338308	
mm_157283.1	chrX	20860920	20861120	-	1	NA	NA	NA	2162	NR_049190	100885829		NR_049190	ENSMUSG00000093408	Mir5617	Gm25192|mir-5617|mmu-mir-5617	microRNA 5617	ncRNA	0.000000	0.452736	
mm_116777.1	chr13	52981873	52982073	-	1	NA	NA	NA	-934	NM_017373	18030	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0.035000	0.507463	
mm_47364.1	chr5	122901609	122901809	-	1	NA	NA	NA	-1359	NM_013910	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.010000	0.442786	
mm_159388.1	chr3	92285190	92285390	+	1	NA	NA	NA	-14	NM_001309382	100042514	Mm.6853	NM_001309382	ENSMUSG00000074445	Sprr2a3	-	small proline-rich protein 2A3	protein-coding	0.000000	0.472637	
mm_2032.1	chr1	87205689	87205889	+	1	NA	NA	NA	-22	NM_009604	11449	Mm.2810	NM_009604	ENSMUSG00000026253	Chrng	Achr-3|Acrg	cholinergic receptor, nicotinic, gamma polypeptide	protein-coding	0.005000	0.621891	
mm_125670.1	chr15	65926718	65926918	+	1	NA	NA	NA	-14531	NM_010953	18256	Mm.41776	NM_010953	ENSMUSG00000015001	Oc90	Ocn-95|PLA2L|Pla2ll|oc95	otoconin 90	protein-coding	0.025000	0.407960	
mm_132141.1	chr16	31948495	31948695	+	1	NA	NA	NA	49	NM_026554	68092	Mm.290027	NM_026554	ENSMUSG00000022774	Ncbp2	20kDa|5930413E18Rik|AA536802|AI843301|C79367	nuclear cap binding protein subunit 2	protein-coding	0.145000	0.676617	
mm_61504.1	chr7	78077518	78077718	+	1	NA	NA	NA	500220	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	0.000000	0.288557	
mm_61219.1	chr7	64392650	64392850	+	1	NA	NA	NA	-21	NM_028626	73724	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	0.080000	0.661692	
mm_50740.1	chr6	52721311	52721511	+	1	NA	NA	NA	7682	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.005000	0.373134	
mm_21157.1	chr2	154569291	154569491	-	1	NA	NA	NA	35	NM_001291105	13555	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|mKIAA4009	E2F transcription factor 1	protein-coding	0.115000	0.701493	
mm_29380.1	chr3	108840372	108840572	-	1	NA	NA	NA	30	NM_011504	20912	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.100000	0.701493	
mm_60034.1	chr7	31002833	31003033	+	1	NA	NA	NA	21012	NM_001242647	76415	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.020000	0.502488	
mm_42807.1	chr5	121752957	121753157	+	1	NA	NA	NA	41448	NM_009125	20239	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.000000	0.407960	
mm_119601.1	chr14	51053451	51053651	+	1	NA	NA	NA	-3388	NM_001011877	497113	Mm.379741	NM_001011877	ENSMUSG00000059648	Rnase11	Raj1	ribonuclease, RNase A family, 11 (non-active)	protein-coding	0.020000	0.452736	-12(AGCTCTTTAAGC,-,0.00)
mm_18319.1	chr2	57112958	57113158	-	1	NA	NA	NA	1980	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.025000	0.462687	
mm_148573.1	chr19	4869291	4869491	+	1	NA	NA	NA	8518	NM_013456	11474	Mm.5316	NM_013456	ENSMUSG00000006457	Actn3	-	actinin alpha 3	protein-coding	0.010000	0.522388	
mm_28995.1	chr3	101426867	101427067	-	1	NA	NA	NA	49842	NM_207205	78908	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	0.015000	0.477612	
mm_13954.1	chr2	121303634	121303834	+	1	NA	NA	NA	8280	NM_001173506	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.005000	0.532338	76(GCATTTAGAGCT,+,0.00)
mm_33434.1	chr4	130061076	130061276	+	1	NA	NA	NA	13336	NM_028266	107581	Mm.41860	NM_028266	ENSMUSG00000040690	Col16a1	2700007F12Rik|A530052M23Rik|AI838662|CA1F	collagen, type XVI, alpha 1	protein-coding	0.000000	0.472637	
mm_28679.1	chr3	95315646	95315846	-	1	NA	NA	NA	556	NM_029789	76893	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.055000	0.631841	
mm_157019.1	chrX	7741205	7741405	-	1	NA	NA	NA	19	NM_207202	54648	Mm.63342	NM_207202	ENSMUSG00000031150	Ccdc120	AA030924|DXImx50e|Jm11|Sfc25	coiled-coil domain containing 120	protein-coding	0.010000	0.532338	
mm_166920.1	chr7	30743618	30743818	-	1	NA	NA	NA	-37	NM_001290631	14447	Mm.436562	NM_008085	ENSMUSG00000061099	Gapdhs	Gapd-s|Gapds	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein-coding	0.020000	0.577114	
mm_94804.1	chr11	23008264	23008464	+	1	NA	NA	NA	-5023	NM_028672	73873	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0.100000	0.661692	
mm_87988.1	chr10	64090826	64091026	+	1	NA	NA	NA	-671	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.005000	0.303483	
mm_173328.1	chrY	90777044	90777244	-	1	NA	NA	NA	-8298	NR_137282	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.025000	0.681592	
mm_117991.1	chr13	100306925	100307125	-	1	NA	NA	NA	9591	NM_010871	17952	Mm.218759	NM_010871	ENSMUSG00000078942	Naip6	Birc1f|Naip-rs4|Naip-rs4A	NLR family, apoptosis inhibitory protein 6	protein-coding	0.000000	0.358209	
mm_81424.1	chr9	109056579	109056779	+	1	NA	NA	NA	1813	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.020000	0.552239	
mm_89879.1	chr10	108332078	108332278	+	1	NA	NA	NA	-11	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.095000	0.711443	
mm_37474.1	chr4	123565345	123565545	-	1	NA	NA	NA	-50975	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.000000	0.452736	
mm_104377.1	chr11	94392850	94393050	-	1	NA	NA	NA	26	NM_029600	76408	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.045000	0.631841	
mm_98744.1	chr11	96464555	96464755	+	1	NA	NA	NA	64	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.100000	0.721393	
mm_160772.1	chr10	117675793	117675993	+	1	NA	NA	NA	34865	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.035000	0.497512	
mm_4877.1	chr1	187919197	187919397	+	1	NA	NA	NA	-78530	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.020000	0.482587	-39(TATTTTAAAAGG,-,0.00)
mm_168707.1	chr11	99824702	99824902	+	1	NA	NA	NA	-9136	NM_001100614	670496	Mm.466614	NM_001100614	ENSMUSG00000078258	Gm11564	OTTMUSG00000002201	predicted gene 11564	protein-coding	0.035000	0.552239	
mm_144246.1	chr18	10764466	10764666	+	1	NA	NA	NA	18410	NR_029547	387151		NR_029547	ENSMUSG00000065399	Mir133a-1	Mirn133|Mirn133a-1|mir-133a-1	microRNA 133a-1	ncRNA	0.005000	0.228856	
mm_135778.1	chr16	56885828	56886028	-	1	NA	NA	NA	235	NM_019631	56277	Mm.262328	NM_019631	ENSMUSG00000022754	Tmem45a	C630002M10Rik|M32486|p19.5	transmembrane protein 45a	protein-coding	0.015000	0.492537	
mm_2064.1	chr1	87594490	87594690	+	1	NA	NA	NA	40	NM_015750	23956	Mm.143717	NM_015750	ENSMUSG00000079434	Neu2	MBS|MSS|MTS	neuraminidase 2	protein-coding	0.020000	0.482587	
mm_6728.1	chr1	82767113	82767313	-	1	NA	NA	NA	1243	NM_025453	66261	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.010000	0.373134	
mm_40118.1	chr5	34974890	34975090	+	1	NA	NA	NA	-24088	NM_001163512	71729	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.010000	0.447761	
mm_140188.1	chr17	83215180	83215380	+	1	NA	NA	NA	-3	NM_134117	106522	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.150000	0.825871	-34(GGCCTTATAAGC,-,0.00),-32(CCTTATAAGCGG,+,0.00)
mm_98996.1	chr11	98795146	98795346	+	1	NA	NA	NA	-523	NM_028722	74026	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male-specific lethal 1 homolog (Drosophila)	protein-coding	0.135000	0.746269	-8(TTTTTTAAAGGG,+,0.00)
mm_156490.1	chrX	144335986	144336186	+	1	NA	NA	NA	18120	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.015000	0.492537	
mm_112409.1	chr13	3564903	3565103	+	1	NA	NA	NA	26928	NM_008112	14569	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0.010000	0.402985	
mm_120102.1	chr14	58893367	58893567	+	1	NA	NA	NA	249426	NM_026461	67932	Mm.65550	NM_026461	ENSMUSG00000021977	1700129C05Rik	-	RIKEN cDNA 1700129C05 gene	protein-coding	0.030000	0.502488	
mm_18676.1	chr2	71317479	71317679	-	1	NA	NA	NA	49975	NM_172436	78830	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.010000	0.457711	
mm_150735.1	chr19	43732162	43732362	+	1	NA	NA	NA	20738	NM_144874	226139	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	0.000000	0.398010	
mm_134063.1	chr16	8425056	8425256	-	1	NA	NA	NA	-20	NM_029070	74720	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding	0.055000	0.592040	
mm_2166.1	chr1	88259058	88259258	+	1	NA	NA	NA	10250	NR_040291	78605	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.010000	0.447761	-39(GCCCAGAAAAAG,-,0.00)
mm_61576.1	chr7	79821706	79821906	+	1	NA	NA	NA	11079	NM_008589	17293	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0.005000	0.467662	
mm_67081.1	chr7	68275014	68275214	-	1	NA	NA	NA	-16	NR_040341	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.025000	0.507463	
mm_141849.1	chr17	34801667	34801867	-	1	NA	NA	NA	2659	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.040000	0.572139	1(GTCTCTTTAAAG,-,0.00)
mm_57049.1	chr6	122345301	122345501	-	1	NA	NA	NA	-5174	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.010000	0.487562	
mm_147410.1	chr18	44828789	44828989	-	1	NA	NA	NA	224	NM_001163013	240255	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	0.090000	0.671642	
mm_151355.1	chr19	55898862	55899062	+	1	NA	NA	NA	3641	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.010000	0.532338	
mm_144023.1	chr17	90036335	90036535	-	1	NA	NA	NA	51933	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.005000	0.343284	20(GTTTTTAAAAAG,-,0.00),22(TTTTAAAAAGCC,+,0.00)
mm_4289.1	chr1	171762846	171763046	+	1	NA	NA	NA	-4186	NM_013730	27218	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	0.015000	0.457711	
mm_134386.1	chr16	17222315	17222515	-	1	NA	NA	NA	-11172	NM_178922	58180	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0.065000	0.577114	
mm_82505.1	chr9	20480777	20480977	-	1	NA	NA	NA	11869	NM_146221	235028	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	0.005000	0.388060	
mm_133249.1	chr16	77247125	77247325	+	1	NA	NA	NA	-82103	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.000000	0.308458	
mm_38877.1	chr4	149689426	149689626	-	1	NA	NA	NA	9182	NM_001164050	18707	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol 3-kinase catalytic delta polypeptide	protein-coding	0.010000	0.482587	
mm_84053.1	chr9	58158425	58158625	-	1	NA	NA	NA	29	NM_001195431	26968	Mm.367887	NM_012043	ENSMUSG00000037206	Islr	AW553146|Meflin	immunoglobulin superfamily containing leucine-rich repeat	protein-coding	0.010000	0.557214	
mm_113675.1	chr13	42753727	42753927	+	1	NA	NA	NA	44246	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.005000	0.522388	
mm_69541.1	chr7	135695577	135695777	-	1	NA	NA	NA	20702	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.005000	0.472637	
mm_115880.1	chr13	21780067	21780267	-	1	NA	NA	NA	458	NM_020034	56702	Mm.221314	NM_020034	ENSMUSG00000058773	Hist1h1b	H1.5|H1B|H1f5|H1s-3	histone cluster 1, H1b	protein-coding	0.050000	0.582090	15(ACCCCTAAAAAG,-,0.00),17(CCCTAAAAAGCC,+,0.00)
mm_122589.1	chr14	50897353	50897553	-	1	NA	NA	NA	-4198	NM_001166651	546611	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	0.030000	0.542289	
mm_134629.1	chr16	21650273	21650473	-	1	NA	NA	NA	44292	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.005000	0.378109	
mm_94706.1	chr11	20249485	20249685	+	1	NA	NA	NA	-161	NM_172260	216543	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.105000	0.661692	
mm_95536.1	chr11	52261418	52261618	+	1	NA	NA	NA	21077	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.020000	0.567164	
mm_158569.1	chrX	150583817	150584017	-	1	NA	NA	NA	4238	NM_029943	77622	Mm.440275	NM_029943	ENSMUSG00000025269	Apex2	C430040P13Rik|ape2	apurinic/apyrimidinic endonuclease 2	protein-coding	0.010000	0.422886	
mm_155302.1	chrX	61185688	61185888	+	1	NA	NA	NA	-230	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.000000	0.393035	
mm_65202.1	chr7	19696858	19697058	-	1	NA	NA	NA	1440	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.075000	0.661692	
mm_13590.1	chr2	112492866	112493066	+	1	NA	NA	NA	2	NM_028844	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.165000	0.810945	
mm_148601.1	chr19	5298182	5298382	+	1	NA	NA	NA	-49	NM_001024717	545276	Mm.447174	NM_001024717	ENSMUSG00000047658	Gal3st3	-	galactose-3-O-sulfotransferase 3	protein-coding	0.060000	0.666667	
mm_36813.1	chr4	103215264	103215464	-	1	NA	NA	NA	-480	NM_177732	242585	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.085000	0.746269	
mm_57729.1	chr6	128945756	128945956	-	1	NA	NA	NA	11475	NM_027562	70809	Mm.439891	NM_027562	ENSMUSG00000000248	Clec2g	4632413B12Rik|Clr-c|Clr-d|Clrc|Clrd|Clrx|Ddv10|Ocilrp1	C-type lectin domain family 2, member g	protein-coding	0.010000	0.437811	
mm_45171.1	chr5	51495704	51495904	-	1	NA	NA	NA	58117	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.005000	0.378109	
mm_38617.1	chr4	141952150	141952350	-	1	NA	NA	NA	-30742	NR_040672	545691	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037|OTTMUSG00000010113	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.065000	0.557214	
mm_112220.1	chr12	113429147	113429347	-	1	NA	NA	NA	-60318	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.517413	
mm_76584.1	chr8	89025903	89026103	-	1	NA	NA	NA	1268	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.065000	0.656716	
mm_87719.1	chr10	60106110	60106310	+	1	NA	NA	NA	-47	NM_052994	94214	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.035000	0.472637	
mm_12406.1	chr2	70508602	70508802	+	1	NA	NA	NA	-117	NM_025744	66748	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	0.025000	0.457711	
mm_54172.1	chr6	23650181	23650381	-	1	NA	NA	NA	24	NM_198251	386611	Mm.436547	NM_198251	ENSMUSG00000051956	Rnf133	Greul2	ring finger protein 133	protein-coding	0.000000	0.398010	
mm_128425.1	chr15	48791891	48792091	-	1	NA	NA	NA	-2	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0.055000	0.537313	
mm_159908.1	chr6	43309458	43309658	-	1	NA	NA	NA	-4	NM_130869	18291	Mm.17715	NM_130869	ENSMUSG00000029736	Nobox	OG2|Og2x	NOBOX oogenesis homeobox	protein-coding	0.050000	0.631841	
mm_153796.1	chr19	46033114	46033314	-	1	NA	NA	NA	6407	NM_010697	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.070000	0.616915	
mm_97202.1	chr11	75598149	75598349	+	1	NA	NA	NA	1982	NR_110477	654359	Mm.439961	NR_110477		Gm12338	OTTMUSG00000006216	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.020000	0.502488	
mm_108799.1	chr12	91590146	91590346	+	1	NA	NA	NA	241	NM_175335	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.125000	0.751244	
mm_172915.1	chr9	64176064	64176264	+	1	NA	NA	NA	732	NR_028548	100217453		NR_028548	ENSMUSG00000094411	Snord16a	MBII-98	small nucleolar RNA, C/D box 16A	snoRNA	0.010000	0.422886	
mm_157112.1	chrX	9438127	9438327	-	1	NA	NA	NA	31097	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.020000	0.487562	
mm_93169.1	chr10	93310762	93310962	-	1	NA	NA	NA	297	NM_001322268	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.035000	0.527363	
mm_147614.1	chr18	57315020	57315220	-	1	NA	NA	NA	-39613	NM_028447	73137	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	0.005000	0.338308	
mm_91923.1	chr10	60300773	60300973	-	1	NA	NA	NA	16412	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.020000	0.542289	69(GCTTATAGGCAG,+,0.00)
mm_118056.1	chr13	102014223	102014423	-	1	NA	NA	NA	-246106	NM_001077495	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.005000	0.467662	-28(TGCCTTTAAAGA,-,0.00),-27(GCCTTTAAAGAT,+,0.00)
mm_115857.1	chr13	21292595	21292795	-	1	NA	NA	NA	-9	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.005000	0.452736	
mm_43788.1	chr5	142629645	142629845	+	1	NA	NA	NA	161	NM_178398	74781	Mm.29432	NM_178398	ENSMUSG00000029578	Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding	0.150000	0.721393	
mm_172660.1	chr8	41164491	41164691	+	1	NA	NA	NA	-30865	NM_001005863	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.015000	0.527363	
mm_19430.1	chr2	91944729	91944929	-	1	NA	NA	NA	101	NR_105965	102465604		NR_105965	ENSMUSG00000098651	Mir6999	Gm27673|mmu-mir-6999	microRNA 6999	ncRNA	0.025000	0.616915	
mm_1330.1	chr1	65230688	65230888	+	1	NA	NA	NA	44103	NM_001310624	18711	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE finger containing	protein-coding	0.000000	0.407960	
mm_153588.1	chr19	43521262	43521462	-	1	NA	NA	NA	3243	NM_010324	14718	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.020000	0.432836	
mm_47189.1	chr5	120754217	120754417	-	1	NA	NA	NA	-4469	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.010000	0.462687	87(GCCTATATGAGG,-,0.00)
mm_120015.1	chr14	55745806	55746006	+	1	NA	NA	NA	213	NM_026403	67842	Mm.180338	NM_026403	ENSMUSG00000019297	Nop9	2610027L16Rik	NOP9 nucleolar protein	protein-coding	0.150000	0.741294	
mm_126449.1	chr15	80798497	80798697	+	1	NA	NA	NA	-13	NM_177124	213988	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.030000	0.487562	-11(TCCTTTAGAGAC,+,0.00)
mm_128081.1	chr15	27681390	27681590	-	1	NA	NA	NA	52	NM_001242424	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.155000	0.756219	
mm_150793.1	chr19	44303241	44303441	+	1	NA	NA	NA	170	NR_039574	100628619		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.025000	0.412935	
mm_72612.1	chr8	84601269	84601469	+	1	NA	NA	NA	61483	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.015000	0.507463	
mm_130827.1	chr15	101845940	101846140	-	1	NA	NA	NA	4746	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.090000	0.711443	
mm_55983.1	chr6	85915573	85915773	-	1	NA	NA	NA	4	NM_023160	66116	Mm.13036	NM_023160	ENSMUSG00000057103	Nat8f1	1110002I11Rik|AI266962|Cml1	N-acetyltransferase 8 (GCN5-related) family member 1	protein-coding	0.065000	0.557214	8(GGCTCTAAAATG,-,0.00)
mm_15791.1	chr2	164425727	164425927	+	1	NA	NA	NA	17361	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.000000	0.462687	
mm_13244.1	chr2	98662746	98662946	+	1	NA	NA	NA	1195189	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.040000	0.343284	
mm_39767.1	chr5	30013461	30013661	+	1	NA	NA	NA	447	NM_031168	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.015000	0.467662	
mm_95108.1	chr11	34070964	34071164	+	1	NA	NA	NA	23863	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.015000	0.537313	
mm_25527.1	chr3	114904119	114904319	+	1	NA	NA	NA	141	NM_153458	229759	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding	0.045000	0.606965	
mm_64278.1	chr7	141809488	141809688	+	1	NA	NA	NA	20577	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.000000	0.542289	
mm_8721.1	chr1	160044649	160044849	-	1	NA	NA	NA	369	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.040000	0.557214	
mm_116784.1	chr13	53286104	53286304	-	1	NA	NA	NA	-95	NM_013846	26564	Mm.342774	NM_013846	ENSMUSG00000021464	Ror2	Ntrkr2|mRor2	receptor tyrosine kinase-like orphan receptor 2	protein-coding	0.120000	0.781095	
mm_48401.1	chr5	140205952	140206152	-	1	NA	NA	NA	115500	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.010000	0.482587	-85(CCATTTATGCCA,+,0.00)
mm_126059.1	chr15	77015683	77015883	+	1	NA	NA	NA	6944	NM_001164048	17189	Mm.404074	NM_013593	ENSMUSG00000018893	Mb	AI325109	myoglobin	protein-coding	0.015000	0.557214	
mm_93313.1	chr10	98897917	98898117	-	1	NA	NA	NA	-17135	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.000000	0.393035	-40(CTTTTAATACTC,+,0.00)
mm_80237.1	chr9	72693102	72693302	+	1	NA	NA	NA	30855	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.040000	0.472637	
mm_73106.1	chr8	94666564	94666764	+	1	NA	NA	NA	64	NM_024191	107566	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0.115000	0.731343	
mm_58768.1	chr7	15885049	15885249	+	1	NA	NA	NA	2532	NR_038092	546024	Mm.259041	NM_001033638	ENSMUSG00000074365	Crxos	AA606869|AY590891|Crxos1|Egam1	cone-rod homeobox, opposite strand	protein-coding	0.000000	0.248756	
mm_23443.1	chr3	59533315	59533515	+	1	NA	NA	NA	-189159	NM_001162884	242050	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.010000	0.368159	
mm_111056.1	chr12	80110107	80110307	-	1	NA	NA	NA	2806	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.075000	0.621891	
mm_140872.1	chr17	23789797	23789997	-	1	NA	NA	NA	-3820	NM_029798	76917	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	0.015000	0.527363	84(TCCTATAAAGCC,+,0.00)
mm_128704.1	chr15	63647797	63647997	-	1	NA	NA	NA	160842	NM_031378	83492	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	0.005000	0.552239	
mm_125838.1	chr15	74958500	74958700	+	1	NA	NA	NA	3494	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.035000	0.567164	
mm_37069.1	chr4	116144470	116144670	-	1	NA	NA	NA	46	NM_026547	68075	Mm.132803	NM_026547	ENSMUSG00000028701	Lurap1	1520402A15Rik|Lrp35a	leucine rich adaptor protein 1	protein-coding	0.095000	0.696517	
mm_115784.1	chr13	19336728	19336928	-	1	NA	NA	NA	58985	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.398010	
mm_80942.1	chr9	102717706	102717906	+	1	NA	NA	NA	2	NM_019764	56332	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0.105000	0.661692	
mm_116523.1	chr13	45789143	45789343	-	1	NA	NA	NA	175748	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.000000	0.388060	
mm_114471.1	chr13	67863226	67863426	+	1	NA	NA	NA	0	NM_001001185	408058	Mm.177840	NM_001001185	ENSMUSG00000064063	BC048507	-	cDNA sequence BC048507	protein-coding	0.040000	0.502488	
mm_110353.1	chr12	39006847	39007047	-	1	NA	NA	NA	223236	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.005000	0.417910	
mm_149091.1	chr19	8929331	8929531	+	1	NA	NA	NA	-75	NM_009073	19881	Mm.426094	NM_009073	ENSMUSG00000071648	Rom1	M101156|Rgsc1156|Rom-1|Rosp1|Tspan23	rod outer segment membrane protein 1	protein-coding	0.060000	0.631841	
mm_104717.1	chr11	98053252	98053452	-	1	NA	NA	NA	110	NM_146028	217154	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0.100000	0.711443	
mm_44381.1	chr5	17821377	17821577	-	1	NA	NA	NA	14419	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.412935	
mm_8114.1	chr1	135919230	135919430	-	1	NA	NA	NA	-123	NM_019645	18772	Mm.4494	NM_019645	ENSMUSG00000026413	Pkp1	-	plakophilin 1	protein-coding	0.060000	0.696517	
mm_131980.1	chr16	25021890	25022090	+	1	NA	NA	NA	-37649	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.005000	0.273632	
mm_165090.1	chr19	52264539	52264739	+	1	NA	NA	NA	342	NM_008386	16333	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding	0.000000	0.537313	
mm_162404.1	chr1	86039561	86039761	+	1	NA	NA	NA	-6202	NM_001144993	72792	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	0.010000	0.487562	
mm_134316.1	chr16	15895680	15895880	-	1	NA	NA	NA	8494	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.005000	0.452736	
mm_151899.1	chr19	5799064	5799264	-	1	NA	NA	NA	-3183	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.000000	0.338308	34(ACCTTTAAAAGT,-,0.00),35(CCTTTAAAAGTT,+,0.00)
mm_167539.1	chr9	22105317	22105517	+	1	NA	NA	NA	6164	NM_009922	12797	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	0.010000	0.527363	
mm_46572.1	chr5	107289271	107289471	-	1	NA	NA	NA	224	NM_011578	21814	Mm.200775	NM_011578	ENSMUSG00000029287	Tgfbr3	1110036H20Rik|AU015626|AW215636|TBRIII	transforming growth factor, beta receptor III	protein-coding	0.125000	0.711443	
mm_41153.1	chr5	87929713	87929913	+	1	NA	NA	NA	4180	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.020000	0.472637	
mm_19517.1	chr2	94010647	94010847	-	1	NA	NA	NA	-17	NM_026944	69113	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	protein-coding	0.070000	0.641791	
mm_101821.1	chr11	46698516	46698716	-	1	NA	NA	NA	214	NM_001161355	171284	Mm.234654	NM_134249	ENSMUSG00000040413	Timd2	AA816106|AU019358|AU019662|C78111|G9D3|TIM-2|Tim2	T cell immunoglobulin and mucin domain containing 2	protein-coding	0.010000	0.457711	
mm_121995.1	chr14	26534800	26535000	-	1	NA	NA	NA	-276	NM_001310445	83997	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0.095000	0.646766	-29(CCCTTGAAAAGG,-,0.00)
mm_101296.1	chr11	22171316	22171516	-	1	NA	NA	NA	115379	NM_153078	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0.015000	0.482587	
mm_19670.1	chr2	103372631	103372831	-	1	NA	NA	NA	33	NR_040332	319854	Mm.403818	NR_040332	ENSMUSG00000087278	A930006I01Rik	-	RIKEN cDNA A930006I01 gene	ncRNA	0.020000	0.497512	
mm_151173.1	chr19	53310385	53310585	+	1	NA	NA	NA	-21	NM_001008542	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.075000	0.616915	
mm_145898.1	chr18	65626751	65626951	+	1	NA	NA	NA	-7236	NR_105742	100526497		NR_105742	ENSMUSG00000077113	Mir466p	mmu-mir-466p	microRNA 466p	ncRNA	0.030000	0.437811	
mm_135125.1	chr16	35843721	35843921	-	1	NA	NA	NA	27561	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.000000	0.378109	
mm_74879.1	chr8	25087436	25087636	-	1	NA	NA	NA	14275	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.000000	0.437811	
mm_54754.1	chr6	41034212	41034412	-	1	NA	NA	NA	1197	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.487562	
mm_10751.1	chr2	23190915	23191115	+	1	NA	NA	NA	-16461	NM_027635	70981	Mm.314026	NM_027635	ENSMUSG00000026774	4931423N10Rik	-	RIKEN cDNA 4931423N10 gene	protein-coding	0.015000	0.353234	
mm_36871.1	chr4	107177529	107177729	-	1	NA	NA	NA	737	NM_025617	66526	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0.040000	0.467662	
mm_44899.1	chr5	35525454	35525654	-	1	NA	NA	NA	72	NM_153107	242939	Mm.108557	NM_153107	ENSMUSG00000036596	Cpz	AV136066	carboxypeptidase Z	protein-coding	0.095000	0.741294	
mm_124329.1	chr14	103843498	103843698	-	1	NA	NA	NA	103	NM_007904	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.045000	0.567164	
mm_37084.1	chr4	116404422	116404622	-	1	NA	NA	NA	59659	NM_001042743	17776	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0.005000	0.308458	
mm_28855.1	chr3	96905218	96905418	-	1	NA	NA	NA	-20	NM_026229	67549	Mm.46722	NM_026229	ENSMUSG00000028096	Gpr89	4933412D19Rik|Gpr89a|SH120	G protein-coupled receptor 89	protein-coding	0.065000	0.651741	
mm_151180.1	chr19	53329413	53329613	+	1	NA	NA	NA	100	NM_010847	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.175000	0.781095	
mm_75955.1	chr8	71701648	71701848	-	1	NA	NA	NA	52	NM_028189	72297	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	0.060000	0.626866	
mm_30544.1	chr4	3683158	3683358	+	1	NA	NA	NA	5137	NM_010747	17096	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.000000	0.497512	
mm_52691.1	chr6	118163020	118163220	+	1	NA	NA	NA	-23980	NM_030165	78752	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0.015000	0.502488	
mm_304.1	chr1	23761756	23761956	+	1	NA	NA	NA	-70	NM_172124	280645	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0.070000	0.706468	
mm_35824.1	chr4	47057226	47057426	-	1	NA	NA	NA	-20	NM_001024136	75691	Mm.86866	NM_001024136	ENSMUSG00000066191	Anks6	2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding	0.185000	0.840796	
mm_51892.1	chr6	90618394	90618594	+	1	NA	NA	NA	-752	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.010000	0.552239	
mm_37733.1	chr4	129573545	129573745	-	1	NA	NA	NA	-4	NM_001162433	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.035000	0.641791	
mm_143047.1	chr17	56874341	56874541	-	1	NA	NA	NA	6	NM_001039114	328845	Mm.179421	NM_001039114	ENSMUSG00000024207	Acsbg2	Bgr	acyl-CoA synthetase bubblegum family member 2	protein-coding	0.005000	0.557214	
mm_100459.1	chr11	119856108	119856308	+	1	NA	NA	NA	-21843	NR_045312	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	0.025000	0.562189	
mm_99920.1	chr11	110479224	110479424	+	1	NA	NA	NA	80202	NM_011943	26399	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.025000	0.517413	
mm_84290.1	chr9	63197277	63197477	-	1	NA	NA	NA	-48416	NM_001163758	207667	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.030000	0.542289	
mm_41650.1	chr5	98254082	98254282	+	1	NA	NA	NA	-2	NM_010203	14176	Mm.5055	NM_010203	ENSMUSG00000029337	Fgf5	Fgf-5|HBGF-5|angora|go	fibroblast growth factor 5	protein-coding	0.100000	0.671642	
mm_159556.1	chr4	107068596	107068796	+	1	NA	NA	NA	1708	NM_175471	230582	Mm.44608	NM_175471	ENSMUSG00000028621	Cyb5rl	2810410C14Rik	cytochrome b5 reductase-like	protein-coding	0.030000	0.601990	
mm_163531.1	chr13	9152268	9152468	-	1	NA	NA	NA	58487	NM_172585	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.005000	0.432836	
mm_157565.1	chrX	52397094	52397294	-	1	NA	NA	NA	-19013	NR_105805	102465202		NR_105805	ENSMUSG00000105738	Mir6384	mmu-mir-6384	microRNA 6384	ncRNA	0.015000	0.373134	
mm_95944.1	chr11	58384643	58384843	+	1	NA	NA	NA	4097	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.020000	0.547264	
mm_83212.1	chr9	42069857	42070057	-	1	NA	NA	NA	54332	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.020000	0.467662	-50(CTTCATATAGCC,+,0.00)
mm_50651.1	chr6	51470245	51470445	+	1	NA	NA	NA	-271	NM_007624	12417	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	0.045000	0.557214	
mm_41508.1	chr5	92371584	92371784	+	1	NA	NA	NA	-8388	NR_038116	56066	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0.030000	0.532338	
mm_82831.1	chr9	31149978	31150178	-	1	NA	NA	NA	-18279	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.015000	0.522388	
mm_137080.1	chr17	21423401	21423601	+	1	NA	NA	NA	274	NM_011760	22712	Mm.12916	NM_011760	ENSMUSG00000023882	Zfp54	2810034D10Rik|KRAB10|Zfp-54|Zfp76|mszf83	zinc finger protein 54	protein-coding	0.025000	0.592040	
mm_109932.1	chr12	10724007	10724207	-	1	NA	NA	NA	277719	NR_110487	328061	Mm.56067	NR_110487		Gm38407	4931412M21	predicted gene, 38407	ncRNA	0.010000	0.398010	
mm_136197.1	chr16	89571081	89571281	-	1	NA	NA	NA	2	NM_001113406	16693	Mm.310906	NM_001113406	ENSMUSG00000091212	Krtap11-1	AA162070|AA589467|AV018433|Hacl1|KAP11.1|PRED29	keratin associated protein 11-1	protein-coding	0.010000	0.507463	
mm_152018.1	chr19	6015397	6015597	-	1	NA	NA	NA	-250	NM_007600	12333	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	0.065000	0.621891	
mm_109953.1	chr12	11436477	11436677	-	1	NA	NA	NA	72	NM_012038	26950	Mm.27005	NM_012038	ENSMUSG00000054459	Vsnl1	VILIP|Vnsl1	visinin-like 1	protein-coding	0.065000	0.606965	87(TCCTAGAAAAGG,-,0.00)
mm_3489.1	chr1	150105759	150105959	+	1	NA	NA	NA	5828	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.288557	
mm_130343.1	chr15	97731419	97731619	-	1	NA	NA	NA	-114	NM_001168693	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.005000	0.522388	
mm_104401.1	chr11	94509697	94509897	-	1	NA	NA	NA	-9823	NM_027984	71889	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	0.010000	0.517413	
mm_57790.1	chr6	129271716	129271916	-	1	NA	NA	NA	3553	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.000000	0.323383	
mm_125367.1	chr15	39687184	39687384	+	1	NA	NA	NA	27773	NM_001256384	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.010000	0.547264	
mm_75426.1	chr8	47220525	47220725	-	1	NA	NA	NA	68777	NM_001286376	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.015000	0.472637	
mm_57840.1	chr6	129465458	129465658	-	1	NA	NA	NA	7221	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.020000	0.437811	14(CCGTATTAATGC,-,0.00)
mm_19519.1	chr2	94066607	94066807	-	1	NA	NA	NA	-55977	NM_026944	69113	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	protein-coding	0.015000	0.457711	58(GCATTTAAACTG,+,0.00)
mm_46959.1	chr5	115119211	115119411	-	1	NA	NA	NA	35	NM_007383	11409	Mm.18759	NM_007383	ENSMUSG00000029545	Acads	AI196007|Bcd-1|Bcd1|Hdlq8|SCAD	acyl-Coenzyme A dehydrogenase, short chain	protein-coding	0.090000	0.771144	
mm_25047.1	chr3	98302523	98302723	+	1	NA	NA	NA	22192	NM_008256	15360	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.025000	0.497512	
mm_37000.1	chr4	110292626	110292826	-	1	NA	NA	NA	-5199	NM_001347178	15572	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein-coding	0.020000	0.497512	
mm_116797.1	chr13	53639095	53639295	-	1	NA	NA	NA	6	NR_131079	77398	Mm.174307	NR_131079		9530014B07Rik	-	RIKEN cDNA 9530014B07 gene	ncRNA	0.015000	0.497512	
mm_49932.1	chr6	39437784	39437984	+	1	NA	NA	NA	-17515	NM_018810	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.025000	0.492537	-33(TTCTATAAAAGT,-,0.00)
mm_48731.1	chr5	147429988	147430188	-	1	NA	NA	NA	-492	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.135000	0.776119	
mm_35460.1	chr4	40716910	40717110	-	1	NA	NA	NA	5307	NR_077221	622208	Mm.471544	NR_077221		Gm6297	-	predicted gene 6297	ncRNA	0.035000	0.517413	
mm_28392.1	chr3	90019138	90019338	-	1	NA	NA	NA	-8028	NR_106129	102465771		NR_106129	ENSMUSG00000098397	Mir7669	Gm27996|mmu-mir-7669	microRNA 7669	ncRNA	0.025000	0.472637	
mm_92392.1	chr10	76599257	76599457	-	1	NA	NA	NA	23709	NM_080845	14317	Mm.36278	NM_080845	ENSMUSG00000001155	Ftcd	-	formiminotransferase cyclodeaminase	protein-coding	0.000000	0.472637	
mm_63844.1	chr7	135651865	135652065	+	1	NA	NA	NA	66	NM_001316681	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.025000	0.611940	
mm_125390.1	chr15	40993832	40994032	+	1	NA	NA	NA	338890	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding	0.010000	0.388060	
mm_6144.1	chr1	64927420	64927620	-	1	NA	NA	NA	29304	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.020000	0.452736	-23(TTCCTTAAAAAC,-,0.00),-21(CCTTAAAAACCC,+,0.00)
mm_35547.1	chr4	41502984	41503184	-	1	NA	NA	NA	-9	NM_001085515	329828	Mm.27054	NM_001085515	ENSMUSG00000046312	AI464131	AA408153|AI604836|Gm762|Kiaa1161|NET37	expressed sequence AI464131	protein-coding	0.050000	0.651741	
mm_21347.1	chr2	157112751	157112951	-	1	NA	NA	NA	22371	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.035000	0.417910	
mm_33358.1	chr4	129486993	129487193	+	1	NA	NA	NA	3677	NM_080442	58864	Mm.143802	NM_080442	ENSMUSG00000000411	Tssk3	1700014N07Rik|4930594I21Rik|Stk22c|Stk22d|Tsk-3|Tssk-3|Tssk3b	testis-specific serine kinase 3	protein-coding	0.035000	0.577114	
mm_14320.1	chr2	129365055	129365255	+	1	NA	NA	NA	-4747	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.005000	0.447761	
mm_141264.1	chr17	27623671	27623871	-	1	NA	NA	NA	-319	NM_019837	56409	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0.080000	0.686567	
mm_8562.1	chr1	155279316	155279516	-	1	NA	NA	NA	120713	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.015000	0.407960	
mm_104770.1	chr11	98545713	98545913	-	1	NA	NA	NA	218	NM_011771	22780	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.160000	0.776119	
mm_50890.1	chr6	56746454	56746654	+	1	NA	NA	NA	31649	NM_030235	78937	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	0.005000	0.402985	
mm_36601.1	chr4	88917149	88917349	-	1	NA	NA	NA	-6587	NR_029747	723895		NR_029747	ENSMUSG00000065408	Mir31	Mirn31|miR-31|mmu-mir-31	microRNA 31	ncRNA	0.015000	0.383085	
mm_42712.1	chr5	120431875	120432075	+	1	NA	NA	NA	89	NM_008499	16873	Mm.5151	NM_008499	ENSMUSG00000029595	Lhx5	Lim2	LIM homeobox protein 5	protein-coding	0.125000	0.681592	
mm_85924.1	chr9	111690127	111690327	-	1	NA	NA	NA	121	NM_016853	20840	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	0.115000	0.736318	
mm_12183.1	chr2	65237740	65237940	+	1	NA	NA	NA	786	NM_177025	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.050000	0.532338	
mm_73424.1	chr8	106117733	106117933	+	1	NA	NA	NA	-17567	NR_040345	69771	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.000000	0.348259	
mm_148229.1	chr18	80363573	80363773	-	1	NA	NA	NA	581	NM_001190373	240444	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.100000	0.716418	
mm_57706.1	chr6	128543308	128543508	-	1	NA	NA	NA	-16688	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.030000	0.532338	
mm_88973.1	chr10	81419903	81420103	+	1	NA	NA	NA	-3706	NR_106141	102465778		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.030000	0.577114	
mm_11735.1	chr2	37532677	37532877	+	1	NA	NA	NA	16151	NM_177383	338346	Mm.445325	NM_177383	ENSMUSG00000053164	Gpr21	C230004C13Rik	G protein-coupled receptor 21	protein-coding	0.000000	0.303483	
mm_151323.1	chr19	55893028	55893228	+	1	NA	NA	NA	-2193	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.025000	0.482587	
mm_114099.1	chr13	54720053	54720253	+	1	NA	NA	NA	18690	NM_001033364	268663	Mm.315382	NM_001033364	ENSMUSG00000034918	Cdhr2	Gm624|PC-LKC|Pcdh24	cadherin-related family member 2	protein-coding	0.005000	0.527363	
mm_137309.1	chr17	24878600	24878800	+	1	NA	NA	NA	-70	NM_008340	16005	Mm.3135	NM_008340	ENSMUSG00000046070	Igfals	ALS|Albs|mKIAA4111	insulin-like growth factor binding protein, acid labile subunit	protein-coding	0.015000	0.631841	
mm_69495.1	chr7	134225021	134225221	-	1	NA	NA	NA	-24	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.100000	0.597015	
mm_11449.1	chr2	32083185	32083385	+	1	NA	NA	NA	420	NM_175511	241303	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.095000	0.656716	
mm_71488.1	chr8	46740199	46740399	+	1	NA	NA	NA	554	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.020000	0.482587	
mm_168986.1	chr12	95585301	95585501	-	1	NA	NA	NA	-106825	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.045000	0.626866	
mm_83908.1	chr9	56259062	56259262	-	1	NA	NA	NA	-98092	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.035000	0.497512	
mm_5106.1	chr1	5084434	5084634	-	1	NA	NA	NA	1448	NM_001310442	108664	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	0.020000	0.457711	
mm_106892.1	chr12	8012235	8012435	+	1	NA	NA	NA	34658	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.477612	
mm_31966.1	chr4	86930668	86930868	+	1	NA	NA	NA	56354	NM_139306	230379	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0.025000	0.522388	
mm_108516.1	chr12	84038312	84038512	+	1	NA	NA	NA	33	NM_134247	171282	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	0.060000	0.611940	
mm_133989.1	chr16	4634301	4634501	-	1	NA	NA	NA	-5544	NM_139307	246154	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0.025000	0.597015	-80(CCCTTTATACCC,+,0.00)
mm_113406.1	chr13	33964594	33964794	+	1	NA	NA	NA	35	NM_001163241	18105	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	NAD(P)H dehydrogenase, quinone 2	protein-coding	0.045000	0.611940	
mm_123505.1	chr14	66232311	66232511	-	1	NA	NA	NA	-18859	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.000000	0.522388	
mm_138248.1	chr17	34589821	34590021	+	1	NA	NA	NA	115	NM_134116	106512	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.015000	0.601990	
mm_58415.1	chr7	3290470	3290670	+	1	NA	NA	NA	14	NM_001093765	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.035000	0.601990	
mm_104700.1	chr11	97988616	97988816	-	1	NA	NA	NA	-2270	NM_001163608	72324	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0.065000	0.582090	
mm_65534.1	chr7	25816418	25816618	-	1	NA	NA	NA	12	NM_028775	74134	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0.050000	0.656716	
mm_166462.1	chr5	140830073	140830273	-	1	NA	NA	NA	258	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.185000	0.771144	
mm_29737.1	chr3	126922663	126922863	-	1	NA	NA	NA	20623	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.000000	0.378109	
mm_142071.1	chr17	35697891	35698091	-	1	NA	NA	NA	2599	NM_001198833	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.040000	0.626866	
mm_51285.1	chr6	72304225	72304425	+	1	NA	NA	NA	-285	NM_001282071	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.035000	0.572139	
mm_24731.1	chr3	95282935	95283135	+	1	NA	NA	NA	100	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.070000	0.636816	
mm_132581.1	chr16	38347158	38347358	+	1	NA	NA	NA	259	NM_001017429	12856	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	0.055000	0.631841	
mm_35685.1	chr4	44012407	44012607	-	1	NA	NA	NA	-136	NM_016760	12757	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.040000	0.601990	
mm_21803.1	chr2	164911497	164911697	-	1	NA	NA	NA	153	NM_199027	329559	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0.115000	0.681592	
mm_115597.1	chr13	11833464	11833664	-	1	NA	NA	NA	273381	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.000000	0.258706	
mm_133971.1	chr16	4374891	4375091	-	1	NA	NA	NA	45507	NM_001291910	11515	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.030000	0.457711	
mm_136525.1	chr16	97459790	97459990	-	1	NA	NA	NA	3015	NM_010846	17857	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.005000	0.432836	
mm_53127.1	chr6	125136579	125136779	+	1	NA	NA	NA	4796	NM_138747	110109	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	0.005000	0.368159	
mm_45626.1	chr5	76231202	76231402	-	1	NA	NA	NA	47422	NM_011626	21982	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0.005000	0.333333	73(GCCTCTAAAAAC,-,0.00)
mm_24587.1	chr3	93444889	93445089	+	1	NA	NA	NA	2659	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.040000	0.606965	
mm_20211.1	chr2	125506302	125506502	-	1	NA	NA	NA	36	NM_007993	14118	Mm.271644	NM_007993	ENSMUSG00000027204	Fbn1	AI536462|B430209H23|Fib-1|Tsk	fibrillin 1	protein-coding	0.080000	0.666667	
mm_54345.1	chr6	30710433	30710633	-	1	NA	NA	NA	-16784	NR_130781	83922	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	0.025000	0.482587	
mm_147002.1	chr18	34373202	34373402	-	1	NA	NA	NA	113	NM_007874	13476	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0.120000	0.691542	
mm_13093.1	chr2	91256019	91256219	+	1	NA	NA	NA	-46	NM_001289677	80708	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	0.025000	0.477612	
mm_133704.1	chr16	93123918	93124118	+	1	NA	NA	NA	229171	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.015000	0.437811	
mm_30864.1	chr4	31963851	31964051	+	1	NA	NA	NA	-156	NM_009316	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.125000	0.681592	
mm_62401.1	chr7	101108700	101108900	+	1	NA	NA	NA	25	NM_199012	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.090000	0.741294	
mm_50388.1	chr6	48700435	48700635	+	1	NA	NA	NA	7709	NM_153175	231931	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	0.000000	0.442786	
mm_110178.1	chr12	27337029	27337229	-	1	NA	NA	NA	5589	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.020000	0.383085	
mm_64497.1	chr7	143473679	143473879	+	1	NA	NA	NA	24	NM_008767	18400	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0.015000	0.537313	
mm_70681.1	chr8	14996036	14996236	+	1	NA	NA	NA	-14889	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.035000	0.562189	61(TCTTAAAAAGGA,+,0.00)
mm_141743.1	chr17	34129306	34129506	-	1	NA	NA	NA	6574	NM_010386	14998	Mm.16373	NM_010386	ENSMUSG00000037649	H2-DMa	H-2Ma|H2-Ma	histocompatibility 2, class II, locus DMa	protein-coding	0.015000	0.552239	-56(GGATATATAAAG,-,0.00)
mm_114624.1	chr13	76098669	76098869	+	1	NA	NA	NA	35	NM_001081352	218343	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	mKIAA0372	tetratricopeptide repeat domain 37	protein-coding	0.060000	0.507463	
mm_138957.1	chr17	44188559	44188759	+	1	NA	NA	NA	87	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	0.050000	0.577114	
mm_136316.1	chr16	91728976	91729176	-	1	NA	NA	NA	-274	NM_133679	66609	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	0.045000	0.477612	
mm_37303.1	chr4	119257063	119257263	-	1	NA	NA	NA	1694	NM_001038590	242653	Mm.130701	NM_153105	ENSMUSG00000066058	Cldn19	-	claudin 19	protein-coding	0.010000	0.567164	
mm_16234.1	chr2	173156184	173156384	+	1	NA	NA	NA	3211	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.030000	0.537313	
mm_142366.1	chr17	44105792	44105992	-	1	NA	NA	NA	-84	NM_199016	224794	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90|mKIAA0879	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	0.160000	0.800995	
mm_158098.1	chrX	101734034	101734234	-	1	NA	NA	NA	13	NM_009910	12766	Mm.12876	NM_009910	ENSMUSG00000050232	Cxcr3	Cd183|Cmkar3	chemokine (C-X-C motif) receptor 3	protein-coding	0.020000	0.552239	
mm_147252.1	chr18	38603003	38603203	-	1	NA	NA	NA	-1835	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.015000	0.472637	-96(CTGCTTAAAAGA,-,0.00)
mm_93569.1	chr10	116559197	116559397	-	1	NA	NA	NA	22214	NM_001037848	72068	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.005000	0.373134	
mm_22843.1	chr3	27984073	27984273	+	1	NA	NA	NA	2	NM_008875	18805	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.020000	0.502488	-16(GCCTTTAGGGAG,+,0.00)
mm_17633.1	chr2	31054103	31054303	-	1	NA	NA	NA	42297	NM_001177650	14269	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.025000	0.512438	
mm_119173.1	chr14	32159845	32160045	+	1	NA	NA	NA	58	NM_001033988	27057	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.105000	0.626866	
mm_24493.1	chr3	92365786	92365986	+	1	NA	NA	NA	699	NM_011472	20760	Mm.10692	NM_011472	ENSMUSG00000050635	Sprr2f	-	small proline-rich protein 2F	protein-coding	0.005000	0.467662	
mm_145026.1	chr18	39031444	39031644	+	1	NA	NA	NA	38399	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.005000	0.328358	
mm_91358.1	chr10	28973866	28974066	-	1	NA	NA	NA	12340	NM_026336	67719	Mm.440480	NM_026336	ENSMUSG00000015519	2310057J18Rik	2210414P04Rik|Leg1	RIKEN cDNA 2310057J18 gene	protein-coding	0.020000	0.462687	
mm_116059.1	chr13	27511472	27511672	-	1	NA	NA	NA	1641	NM_023741	74188	Mm.46090	NM_023741	ENSMUSG00000021346	Prl8a8	1600032B14Rik|Ghd14|PLP-Cgamma|Prlpc3	prolactin family 8, subfamily a, member 81	protein-coding	0.015000	0.477612	
mm_89007.1	chr10	81628457	81628657	+	1	NA	NA	NA	17	NM_027480	70615	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0.040000	0.646766	
mm_24720.1	chr3	95234613	95234813	+	1	NA	NA	NA	5770	NM_001038708	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.025000	0.557214	
mm_71731.1	chr8	61986808	61987008	+	1	NA	NA	NA	58821	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.005000	0.343284	-15(GTGTTTAAAGGG,-,0.00)
mm_62414.1	chr7	101301785	101301985	+	1	NA	NA	NA	203	NM_001111111	73683	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.090000	0.676617	
mm_35490.1	chr4	40948041	40948241	-	1	NA	NA	NA	153	NM_009736	12017	Mm.688	NM_009736	ENSMUSG00000028416	Bag1	BAG-1|Rap46	BCL2-associated athanogene 1	protein-coding	0.150000	0.776119	
mm_141295.1	chr17	28079980	28080180	-	1	NA	NA	NA	504	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.135000	0.751244	
mm_34674.1	chr4	150929634	150929834	+	1	NA	NA	NA	1735	NM_001077509	21942	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.020000	0.527363	
mm_50449.1	chr6	48904885	48905085	+	1	NA	NA	NA	-1	NM_001161622	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.010000	0.502488	-33(GAGTATAAGAGG,-,0.00)
mm_138751.1	chr17	37045930	37046130	+	1	NA	NA	NA	64	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.110000	0.751244	
mm_134050.1	chr16	5367764	5367964	-	1	NA	NA	NA	-111908	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.030000	0.527363	-35(CAGCATAAAAAG,-,0.00),-33(GCATAAAAAGAC,+,0.00)
mm_36167.1	chr4	61780729	61780929	-	1	NA	NA	NA	1394	NM_001134644	100048885	Mm.422695	NM_001134644		Gm2083	-	major urinary protein LOC100048885	protein-coding	0.015000	0.393035	
mm_35189.1	chr4	16013706	16013906	-	1	NA	NA	NA	71	NM_145950	209212	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.145000	0.786070	
mm_16753.1	chr2	9867455	9867655	-	1	NA	NA	NA	11045	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.005000	0.388060	
mm_29161.1	chr3	106163272	106163472	-	1	NA	NA	NA	4192	NM_009892	12655	Mm.387173	NM_009892	ENSMUSG00000040809	Chil3	AI505981|Chi3l3|ECF-L|Ym1	chitinase-like 3	protein-coding	0.005000	0.432836	
mm_137966.1	chr17	33432801	33433001	+	1	NA	NA	NA	2	NM_183282	69481	Mm.154333	NM_183282	ENSMUSG00000092519	Actl9	1700029I08Rik|AV259599	actin-like 9	protein-coding	0.005000	0.492537	-33(CTTTTTCTGGCC,+,0.00)
mm_160880.1	chr11	69324040	69324240	+	1	NA	NA	NA	154	NM_001024206	245828	Mm.28073	NM_001024206	ENSMUSG00000049299	Trappc1	BET5|D11Ertd172e|MUM2	trafficking protein particle complex 1	protein-coding	0.030000	0.532338	
mm_71424.1	chr8	46490981	46491181	+	1	NA	NA	NA	115	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.025000	0.597015	
mm_87404.1	chr10	45634539	45634739	+	1	NA	NA	NA	56810	NM_172473	209462	Mm.458633	NM_172473	ENSMUSG00000038822	Hace1	1700042J16Rik|A730034A22Rik|BC025474	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	protein-coding	0.005000	0.258706	
mm_105580.1	chr11	106665347	106665547	-	1	NA	NA	NA	49834	NM_001305158	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.020000	0.487562	
mm_154879.1	chrX	20695417	20695617	+	1	NA	NA	NA	7091	NM_011049	18555	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	0.005000	0.422886	
mm_141699.1	chr17	33996307	33996507	-	1	NA	NA	NA	3926	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.005000	0.507463	
mm_141697.1	chr17	33996119	33996319	-	1	NA	NA	NA	4114	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.000000	0.482587	
mm_101436.1	chr11	30107263	30107463	-	1	NA	NA	NA	-81330	NM_146016	237711	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0.000000	0.293532	
mm_135557.1	chr16	49856022	49856222	-	1	NA	NA	NA	468	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.040000	0.636816	
mm_21389.1	chr2	157560773	157560973	-	1	NA	NA	NA	795	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.025000	0.358209	
mm_142830.1	chr17	51776437	51776637	-	1	NA	NA	NA	35517	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.000000	0.338308	
mm_75998.1	chr8	72474723	72474923	-	1	NA	NA	NA	410	NM_138585	27967	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	0.080000	0.636816	
mm_129261.1	chr15	76804989	76805189	-	1	NA	NA	NA	13081	NM_001168288	223666	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0.010000	0.373134	
mm_26713.1	chr3	157993564	157993764	+	1	NA	NA	NA	38090	NM_001093753	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.005000	0.462687	
mm_78669.1	chr9	40730909	40731109	+	1	NA	NA	NA	45045	NM_133733	71566	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.040000	0.631841	
mm_125048.1	chr15	25843117	25843317	+	1	NA	NA	NA	-81	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.150000	0.786070	
mm_85367.1	chr9	103220869	103221069	-	1	NA	NA	NA	9317	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.035000	0.552239	
mm_146709.1	chr18	13972560	13972760	-	1	NA	NA	NA	73	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.055000	0.636816	
mm_63385.1	chr7	127214156	127214356	+	1	NA	NA	NA	2648	NM_016754	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.020000	0.502488	
mm_102431.1	chr11	59500096	59500296	-	1	NA	NA	NA	-5457	NR_135273	74476	Mm.440257	NR_015585	ENSMUSG00000072893	4933439C10Rik	2610028M21Rik	RIKEN cDNA 4933439C10 gene	ncRNA	0.005000	0.407960	
mm_66270.1	chr7	37230974	37231174	-	1	NA	NA	NA	532956	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.005000	0.432836	
mm_46422.1	chr5	104113648	104113848	-	1	NA	NA	NA	340	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding	0.015000	0.507463	
mm_160148.1	chr7	41032419	41032619	+	1	NA	NA	NA	-200	NM_183166	233164	Mm.67238	NM_183166	ENSMUSG00000048312	Gm4884	4930549O06|EG233164	predicted gene 4884	protein-coding	0.000000	0.422886	
mm_40607.1	chr5	64487763	64487963	+	1	NA	NA	NA	10855	NR_045413	77382	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	0.025000	0.502488	
mm_5322.1	chr1	22805973	22806173	-	1	NA	NA	NA	-349	NM_001012624	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.145000	0.840796	
mm_78648.1	chr9	40324438	40324638	+	1	NA	NA	NA	-8934	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.005000	0.497512	
mm_19352.1	chr2	90918318	90918518	-	1	NA	NA	NA	-368	NM_025576	66461	Mm.23926	NM_025576		Ptpmt1	1110001D10Rik|2810004N20Rik|PLIP	protein tyrosine phosphatase, mitochondrial 1	protein-coding	0.005000	0.452736	
mm_161528.1	chr15	101367558	101367758	-	1	NA	NA	NA	-1694	NR_035462	100316694		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0.015000	0.597015	
mm_67021.1	chr7	66049512	66049712	-	1	NA	NA	NA	-10724	NM_021336	68981	Mm.22362	NM_021336	ENSMUSG00000030512	Snrpa1	1500015N06Rik	small nuclear ribonucleoprotein polypeptide A'	protein-coding	0.045000	0.517413	
mm_17206.1	chr2	25470003	25470203	-	1	NA	NA	NA	-354	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.010000	0.537313	
mm_98689.1	chr11	96298965	96299165	+	1	NA	NA	NA	-106	NM_008269	15414	Mm.215	NM_008269	ENSMUSG00000000690	Hoxb6	Hox-2.2	homeobox B6	protein-coding	0.060000	0.542289	
mm_168461.1	chr11	4441069	4441269	-	1	NA	NA	NA	-87	NM_029458	75828	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0.035000	0.606965	
mm_129171.1	chr15	76249299	76249499	-	1	NA	NA	NA	1208	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.015000	0.562189	
mm_166759.1	chr6	129036534	129036734	+	1	NA	NA	NA	-9267	NR_024262	232408	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.000000	0.492537	
mm_167421.1	chr8	111561075	111561275	+	1	NA	NA	NA	22832	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.015000	0.512438	
mm_166398.1	chr5	135351858	135352058	+	1	NA	NA	NA	-1337	NM_001346745	215061	Mm.261834	NM_178240	ENSMUSG00000053388	Trim50	-	tripartite motif-containing 50	protein-coding	0.015000	0.597015	
mm_151678.1	chr19	4216003	4216203	-	1	NA	NA	NA	1714	NM_001310039	56708	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	0.020000	0.527363	
mm_76305.1	chr8	84270282	84270482	-	1	NA	NA	NA	20	NM_001294281	67736	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	0.090000	0.676617	
mm_11660.1	chr2	35132078	35132278	+	1	NA	NA	NA	-56	NM_001290635	26920	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.030000	0.542289	
mm_118103.1	chr13	103920358	103920558	-	1	NA	NA	NA	128	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.090000	0.656716	
mm_135193.1	chr16	36408256	36408456	-	1	NA	NA	NA	7	NM_001082545	20862	Mm.359610	NM_001082545	ENSMUSG00000022902	Stfa2	Stf2	stefin A2	protein-coding	0.000000	0.452736	-38(CCTTTAAAACCC,+,0.00)
mm_15566.1	chr2	158610913	158611113	+	1	NA	NA	NA	255	NM_009508	22348	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	0.140000	0.746269	
mm_6303.1	chr1	71414756	71414956	-	1	NA	NA	NA	54	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding	0.010000	0.432836	
mm_99734.1	chr11	106365397	106365597	+	1	NA	NA	NA	-9329	NM_029345	75573	Mm.159539	NM_029345	ENSMUSG00000009210	Prr29	2310007L24Rik	proline rich 29	protein-coding	0.030000	0.666667	
mm_161278.1	chr14	16384404	16384604	+	1	NA	NA	NA	19298	NM_009409	21974	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.000000	0.378109	
mm_85311.1	chr9	101120630	101120830	-	1	NA	NA	NA	45968	NM_001100451	77853	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	male-specific lethal 2 homolog (Drosophila)	protein-coding	0.005000	0.358209	
mm_47042.1	chr5	116024264	116024464	-	1	NA	NA	NA	64	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.130000	0.686567	
mm_68062.1	chr7	101864025	101864225	-	1	NA	NA	NA	6663	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.005000	0.562189	
mm_109770.1	chr12	118847133	118847333	+	1	NA	NA	NA	904	NM_177082	320145	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.065000	0.542289	
mm_98552.1	chr11	95076848	95077048	+	1	NA	NA	NA	-137	NM_001306162	16400	Mm.57035	NM_013565	ENSMUSG00000001507	Itga3	AA407068|CD49C|GAPB3	integrin alpha 3	protein-coding	0.085000	0.626866	-31(CCCTTAAAGCCC,+,0.00)
mm_132051.1	chr16	29533133	29533333	+	1	NA	NA	NA	8250	NM_172613	224079	Mm.54954	NM_172613	ENSMUSG00000038094	Atp13a4	4631413J11Rik|4832416L12|9330174J19Rik	ATPase type 13A4	protein-coding	0.005000	0.407960	57(CCCTCTAAAAAA,-,0.00)
mm_76684.1	chr8	94036941	94037141	-	1	NA	NA	NA	-2	NM_026623	68219	Mm.354445	NM_026623	ENSMUSG00000031754	Nudt21	25kDa|3110048P04Rik|5730530J16Rik|AU014860|AW549947|Cpsf5	nudix (nucleoside diphosphate linked moiety X)-type motif 21	protein-coding	0.095000	0.601990	
mm_98364.1	chr11	93955222	93955422	+	1	NA	NA	NA	461	NM_001077529	18103	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	0.060000	0.616915	
mm_66128.1	chr7	31054706	31054906	-	1	NA	NA	NA	47	NM_052991	56188	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	0.035000	0.621891	
mm_170965.1	chr2	58159958	58160158	-	1	NA	NA	NA	64	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.040000	0.552239	
mm_85773.1	chr9	109051610	109051810	-	1	NA	NA	NA	-3156	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.010000	0.562189	
mm_57476.1	chr6	125234711	125234911	-	1	NA	NA	NA	1	NR_106193	102465901		NR_106193	ENSMUSG00000098856	Mir8113	Gm27394|mmu-mir-8113	microRNA 8113	ncRNA	0.015000	0.611940	
mm_133867.1	chr16	96361711	96361911	+	1	NA	NA	NA	47	NM_028078	72058	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.035000	0.562189	
mm_71017.1	chr8	33385549	33385749	+	1	NA	NA	NA	-122	NM_011721	22427	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome homolog (human)	protein-coding	0.115000	0.716418	
mm_2257.1	chr1	91114700	91114900	+	1	NA	NA	NA	-30303	NM_001033408	329207	Mm.295940	NM_001033408	ENSMUSG00000070732	Rbm44	Gm817	RNA binding motif protein 44	protein-coding	0.015000	0.517413	
mm_15354.1	chr2	156311660	156311860	+	1	NA	NA	NA	-713	NM_027585	70873	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	0.025000	0.442786	
mm_13435.1	chr2	105126382	105126582	+	1	NA	NA	NA	28	NR_015462	329480	Mm.246679	NR_015462	ENSMUSG00000074987	Wt1os	6030498F17|AI314831|Wt1-as	Wilms tumor 1 homolog, opposite strand	ncRNA	0.075000	0.676617	
mm_15331.1	chr2	155775263	155775463	+	1	NA	NA	NA	21	NM_010808	17391	Mm.389325	NM_010808	ENSMUSG00000027612	Mmp24	AU040325|MMP-21|MT5-MMP|MT5MMP|MTMMP5	matrix metallopeptidase 24	protein-coding	0.220000	0.905473	
mm_147172.1	chr18	36726638	36726838	-	1	NA	NA	NA	77	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.025000	0.492537	
mm_160602.1	chr9	78155143	78155343	+	1	NA	NA	NA	-20671	NR_040401	320295	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	0.030000	0.517413	-84(CCTTTTCTAGTG,+,0.00)
mm_135775.1	chr16	56831785	56831985	-	1	NA	NA	NA	-36027	NM_172825	239853	Mm.258979	NM_172825	ENSMUSG00000022755	Adgrg7	9130020O16Rik|Gpr128	adhesion G protein-coupled receptor G7	protein-coding	0.020000	0.497512	
mm_11917.1	chr2	52071511	52071711	+	1	NA	NA	NA	-1226	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.020000	0.477612	68(TTCTTGAAAAGG,-,0.00)
mm_129284.1	chr15	77162811	77163011	-	1	NA	NA	NA	-9099	NM_001286418	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.005000	0.422886	
mm_62446.1	chr7	101383925	101384125	+	1	NA	NA	NA	-1501	NM_027180	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.010000	0.562189	
mm_58611.1	chr7	5061305	5061505	+	1	NA	NA	NA	-738	NM_133671	22185	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.065000	0.582090	
mm_67415.1	chr7	80232389	80232589	-	1	NA	NA	NA	316	NM_001291276	23991	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0.120000	0.706468	
mm_76937.1	chr8	105939808	105940008	-	1	NA	NA	NA	-1516	NM_013640	19171	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0.035000	0.507463	
mm_28243.1	chr3	88481811	88482011	-	1	NA	NA	NA	11401	NM_019390	16905	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.000000	0.328358	
mm_29913.1	chr3	131488911	131489111	-	1	NA	NA	NA	-75757	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.010000	0.487562	
mm_166641.1	chr6	83537046	83537246	-	1	NA	NA	NA	-895	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.010000	0.512438	
mm_149700.1	chr19	21278073	21278273	+	1	NA	NA	NA	5895	NM_009551	22682	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.000000	0.363184	
mm_69759.1	chr7	141009567	141009767	-	1	NA	NA	NA	1077	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.030000	0.462687	
mm_155277.1	chrX	61120413	61120613	+	1	NA	NA	NA	4135	NR_030706	331424	Mm.127263	NM_177916	ENSMUSG00000071753	C230004F18Rik	-	RIKEN cDNA C230004F18 gene	ncRNA	0.005000	0.407960	
mm_153844.1	chr19	46332705	46332905	-	1	NA	NA	NA	4621	NM_133694	68431	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	0.010000	0.592040	
mm_138094.1	chr17	34039142	34039342	+	1	NA	NA	NA	104	NM_001317722	12815	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.020000	0.537313	
mm_101298.1	chr11	22286712	22286912	-	1	NA	NA	NA	-17	NM_001252515	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0.135000	0.761194	
mm_137364.1	chr17	25370487	25370687	+	1	NA	NA	NA	34	NM_012034	26945	Mm.180108	NM_012034	ENSMUSG00000033200	Tpsg1	Prss31|Tmt	tryptase gamma 1	protein-coding	0.000000	0.606965	
mm_163198.1	chr11	96124339	96124539	+	1	NA	NA	NA	-9347	NM_172799	237930	Mm.249912	NM_172799	ENSMUSG00000038756	Ttll6	4932418K24Rik|D11Moh43e|D11Moh44e|t8130b59	tubulin tyrosine ligase-like family, member 6	protein-coding	0.095000	0.676617	
mm_28648.1	chr3	95228236	95228436	-	1	NA	NA	NA	-88	NM_172395	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.070000	0.636816	
mm_166907.1	chr7	28893605	28893805	-	1	NA	NA	NA	12049	NM_001110807	60594	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	0.005000	0.398010	
mm_41272.1	chr5	89149261	89149461	+	1	NA	NA	NA	262101	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.020000	0.482587	-69(TCTTTTAGGGTG,+,0.00)
mm_71906.1	chr8	70072936	70073136	+	1	NA	NA	NA	112	NM_181540	107770	Mm.37974	NM_181540	ENSMUSG00000036151	Tm6sf2	-	transmembrane 6 superfamily member 2	protein-coding	0.075000	0.641791	
mm_136120.1	chr16	85900141	85900341	-	1	NA	NA	NA	884	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0.070000	0.646766	
mm_44058.1	chr5	148265133	148265333	+	1	NA	NA	NA	127582	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.075000	0.676617	
mm_29226.1	chr3	107212770	107212970	-	1	NA	NA	NA	8862	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.467662	
mm_146561.1	chr18	6241377	6241577	-	1	NA	NA	NA	47	NM_008448	16573	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.100000	0.691542	
mm_136417.1	chr16	93929394	93929594	-	1	NA	NA	NA	73	NM_001165925	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.035000	0.542289	
mm_59008.1	chr7	19212434	19212634	+	1	NA	NA	NA	-4	NM_175668	319197	Mm.135984	NM_175668	ENSMUSG00000044317	Gpr4	-	G protein-coupled receptor 4	protein-coding	0.095000	0.761194	
mm_142924.1	chr17	53845981	53846181	-	1	NA	NA	NA	-123	NM_026935	69083	Mm.19320	NM_026935	ENSMUSG00000023122	Sult1c2	1810008N17Rik|ST1C1|ST1C2|Sult1c1	sulfotransferase family, cytosolic, 1C, member 2	protein-coding	0.010000	0.472637	
mm_11329.1	chr2	30441834	30442034	+	1	NA	NA	NA	25884	NM_138748	110854	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.025000	0.567164	
mm_76536.1	chr8	87960449	87960649	-	1	NA	NA	NA	-954	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	0.075000	0.681592	
mm_78418.1	chr9	31030561	31030761	+	1	NA	NA	NA	17	NM_172765	235132	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.145000	0.776119	
mm_11772.1	chr2	38880786	38880986	+	1	NA	NA	NA	27056	NR_029904	723903		NR_029904	ENSMUSG00000065578	Mir181b-2	Mirn181b-2|mir-181b-2	microRNA 181b-2	ncRNA	0.010000	0.248756	
mm_32781.1	chr4	116708496	116708696	+	1	NA	NA	NA	-211	NM_025962	67096	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0.080000	0.557214	
mm_35399.1	chr4	34687186	34687386	-	1	NA	NA	NA	152	NM_011895	24060	Mm.281885	NM_011895	ENSMUSG00000028293	Slc35a1	AA408150|AI314851	solute carrier family 35 (CMP-sialic acid transporter), member 1	protein-coding	0.145000	0.751244	
mm_23448.1	chr3	59952093	59952293	+	1	NA	NA	NA	-116	NR_037189	676914	Mm.228502	NR_037189	ENSMUSG00000070465	Gm9696	-	arylacetamide deacetylase-like 2 pseudogene	pseudo	0.005000	0.368159	79(CACTTTAAAGAG,-,0.00),81(CTTTAAAGAGCC,+,0.00)
mm_61925.1	chr7	90161178	90161378	+	1	NA	NA	NA	31046	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.005000	0.328358	
mm_87218.1	chr10	40258367	40258567	+	1	NA	NA	NA	-802	NM_026113	67371	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	0.050000	0.522388	
mm_105224.1	chr11	102230047	102230247	-	1	NA	NA	NA	3	NR_106179	102465892		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0.110000	0.651741	
mm_85009.1	chr9	87255399	87255599	-	1	NA	NA	NA	33	NM_199316	382090	Mm.335338	NM_199316	ENSMUSG00000056919	Cep162	4922501C03Rik|mKIAA1009	centrosomal protein 162	protein-coding	0.075000	0.601990	
mm_130822.1	chr15	101845566	101845766	-	1	NA	NA	NA	5120	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.005000	0.467662	
mm_65959.1	chr7	30431812	30432012	-	1	NA	NA	NA	8608	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.005000	0.497512	-34(GGCCTTATAAGC,-,0.00),-32(CCTTATAAGCTA,+,0.00),-16(AGGCTTATAAGC,-,0.00),-14(GCTTATAAGCCT,+,0.00)
mm_4437.1	chr1	172506756	172506956	+	1	NA	NA	NA	6610	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.000000	0.512438	
mm_27830.1	chr3	79097631	79097831	-	1	NA	NA	NA	47156	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.378109	
mm_72538.1	chr8	83997112	83997312	+	1	NA	NA	NA	-460	NM_001081415	666704	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.140000	0.805970	-33(CACCTTAAAAGC,-,0.00),-31(CCTTAAAAGCGG,+,0.00)
mm_60413.1	chr7	44476059	44476259	+	1	NA	NA	NA	5812	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.502488	
mm_109768.1	chr12	118602552	118602752	+	1	NA	NA	NA	-72459	NR_045947	100384890	Mm.484658	NR_045947		D230030E09Rik	Npe	Riken cDNA D230030E09 gene	ncRNA	0.020000	0.442786	-58(GCCTTTATAAGA,-,0.00)
mm_92934.1	chr10	84533790	84533990	-	1	NA	NA	NA	-2	NM_175451	216197	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.180000	0.810945	
mm_154092.1	chr19	56821984	56822184	-	1	NA	NA	NA	-4125	NM_001002238	83561	Mm.247541	NM_031387	ENSMUSG00000025081	Tdrd1	MTR-1	tudor domain containing 1	protein-coding	0.105000	0.671642	
mm_160050.1	chr7	3249661	3249861	-	1	NA	NA	NA	-21	NM_001033431	378425	Mm.277152	NM_001033431	ENSMUSG00000078817	Nlrp12	Nalp12|PYPAF7	NLR family, pyrin domain containing 12	protein-coding	0.020000	0.462687	
mm_64356.1	chr7	142390091	142390291	+	1	NA	NA	NA	-2321	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.005000	0.542289	
mm_14410.1	chr2	130277598	130277798	+	1	NA	NA	NA	-328	NR_028528	100217428		NR_028528	ENSMUSG00000065272	Snord57	MBII-434	small nucleolar RNA, C/D box 57	snoRNA	0.005000	0.477612	
mm_125498.1	chr15	55208675	55208875	+	1	NA	NA	NA	75339	NM_001037937	97998	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	0.040000	0.552239	
mm_14653.1	chr2	136922195	136922395	+	1	NA	NA	NA	22944	NM_001038641	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.000000	0.308458	
mm_90799.1	chr10	7661887	7662087	-	1	NA	NA	NA	-1384	NR_030698	320642	Mm.398806	NR_030698		A630066F11Rik	-	RIKEN cDNA A630066F11 gene	ncRNA	0.015000	0.313433	
mm_114625.1	chr13	76098692	76098892	+	1	NA	NA	NA	58	NM_001081352	218343	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	mKIAA0372	tetratricopeptide repeat domain 37	protein-coding	0.040000	0.482587	
mm_69940.1	chr7	142112310	142112510	-	1	NA	NA	NA	8490	NM_001347558	108167466	Mm.365101	NM_001347558	ENSMUSG00000109859	Gm45618	-	predicted gene 45618	protein-coding	0.000000	0.537313	-33(GGATATAAAGGC,-,0.00)
mm_31833.1	chr4	70582320	70582520	+	1	NA	NA	NA	-47492	NM_172694	230316	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.010000	0.333333	29(GCCTTTTTAAAA,-,0.00),31(CTTTTTAAAAAG,+,0.00),31(CTTTTTAAAAAG,-,0.00)
mm_169475.1	chr14	69337082	69337282	+	1	NA	NA	NA	31	NM_026174	67464	Mm.489765	NM_026174	ENSMUSG00000095463	Entpd4	1200014F22Rik|4930513O14Rik|A430102M06Rik|AI414893|Lysal1|mKIAA0392	ectonucleoside triphosphate diphosphohydrolase 4	protein-coding	0.170000	0.771144	
mm_122730.1	chr14	52316278	52316478	-	1	NA	NA	NA	-55	NM_001244916	50524	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding	0.045000	0.661692	
mm_104959.1	chr11	100142039	100142239	-	1	NA	NA	NA	1560	NM_001313963	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.040000	0.572139	
mm_93474.1	chr10	111507285	111507485	-	1	NA	NA	NA	1099	NM_009344	21664	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0.035000	0.661692	
mm_17025.1	chr2	19431760	19431960	-	1	NA	NA	NA	-13803	NM_018809	19213	Mm.69647	NM_018809	ENSMUSG00000026735	Ptf1a	PTF1-p48|PTF1p48|bHLHa29	pancreas specific transcription factor, 1a	protein-coding	0.045000	0.626866	
mm_88904.1	chr10	81177969	81178169	+	1	NA	NA	NA	-892	NR_028549	100217454		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.030000	0.537313	
mm_89914.1	chr10	111176892	111177092	+	1	NA	NA	NA	12190	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.000000	0.288557	
mm_162306.1	chr1	36779926	36780126	+	1	NA	NA	NA	1042	NM_001289612	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.010000	0.522388	
mm_77493.1	chr8	122576519	122576719	-	1	NA	NA	NA	288	NM_009698	11821	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	0.085000	0.641791	
mm_50154.1	chr6	41545986	41546186	+	1	NA	NA	NA	24310	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.000000	0.383085	
mm_15999.1	chr2	167189586	167189786	+	1	NA	NA	NA	-868	NM_008420	16500	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	0.095000	0.696517	
mm_91514.1	chr10	37138463	37138663	-	1	NA	NA	NA	363	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.070000	0.626866	
mm_50589.1	chr6	49060131	49060331	+	1	NA	NA	NA	-13564	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.010000	0.547264	
mm_26337.1	chr3	142547039	142547239	+	1	NA	NA	NA	-12913	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.000000	0.432836	
mm_100168.1	chr11	116531759	116531959	+	1	NA	NA	NA	-52	NM_001172475	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.075000	0.611940	
mm_107033.1	chr12	13438706	13438906	+	1	NA	NA	NA	169679	NM_027706	71169	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	0.000000	0.358209	84(TTTTTTATAGAA,+,0.00)
mm_154237.1	chr19	60580839	60581039	-	1	NA	NA	NA	84	NM_001172097	78832	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	0.085000	0.641791	
mm_104383.1	chr11	94474203	94474403	-	1	NA	NA	NA	-105	NM_001112813	12291	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0.125000	0.731343	
mm_100305.1	chr11	117963569	117963769	+	1	NA	NA	NA	5697	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.095000	0.676617	
mm_121611.1	chr14	8258869	8259069	-	1	NA	NA	NA	50	NM_053115	93732	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0.005000	0.517413	
mm_82194.1	chr9	123964985	123965185	+	1	NA	NA	NA	3607	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.000000	0.422886	47(CTCCATAAATGC,-,0.00)
mm_169581.1	chr1	52320870	52321070	+	1	NA	NA	NA	-87738	NM_001113383	14660	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.040000	0.467662	-90(GTTTAAATAGAC,+,0.00),-33(TTCTATAAAAAC,-,0.00)
mm_173243.1	chrX	89199740	89199940	+	1	NA	NA	NA	209849	NM_008821	18630	Mm.3086	NM_008821	ENSMUSG00000035395	Pet2	PC231|PC326|Pex3	plasmacytoma expressed transcript 2	protein-coding	0.030000	0.507463	
mm_95954.1	chr11	58421011	58421211	+	1	NA	NA	NA	0	NM_027239	69864	Mm.45641	NM_027239	ENSMUSG00000013653	1810065E05Rik	AV047390	RIKEN cDNA 1810065E05 gene	protein-coding	0.005000	0.472637	-34(GGCTATAAAAGT,-,0.00)
mm_64364.1	chr7	142434681	142434881	+	1	NA	NA	NA	-196	NM_001285857	55925	Mm.213002	NM_018802	ENSMUSG00000031098	Syt8	-	synaptotagmin VIII	protein-coding	0.010000	0.552239	
mm_144122.1	chr18	4636443	4636643	+	1	NA	NA	NA	1614	NM_001081963	240185	Mm.33179	NM_001081963	ENSMUSG00000033960	9430020K01Rik	1110056P05Rik|Gm328|Jcad|mKIAA1462	RIKEN cDNA 9430020K01 gene	protein-coding	0.020000	0.487562	
mm_94683.1	chr11	19019027	19019227	+	1	NA	NA	NA	-158	NM_010789	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.060000	0.616915	
mm_124810.1	chr15	8967852	8968052	+	1	NA	NA	NA	3	NM_198024	223332	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0.010000	0.502488	
mm_85105.1	chr9	95400951	95401151	-	1	NA	NA	NA	6219	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.000000	0.412935	
mm_43304.1	chr5	134676454	134676654	+	1	NA	NA	NA	1694	NM_001305875	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.020000	0.587065	
mm_171688.1	chr4	6093296	6093496	-	1	NA	NA	NA	-97709	NM_026534	68053	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	0.015000	0.532338	-32(CCTTTTATAAGT,+,0.00)
mm_56844.1	chr6	117891482	117891682	-	1	NA	NA	NA	-8758	NM_001166432	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.035000	0.587065	
mm_98457.1	chr11	94947533	94947733	+	1	NA	NA	NA	11409	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.020000	0.626866	
mm_17289.1	chr2	26204517	26204717	-	1	NA	NA	NA	1958	NM_001039653	16871	Mm.386765	NM_010711	ENSMUSG00000026934	Lhx3	Lim3|P-LIM|mLIM3|mLim-3	LIM homeobox protein 3	protein-coding	0.010000	0.462687	
mm_23954.1	chr3	84912463	84912663	+	1	NA	NA	NA	-39648	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.010000	0.452736	
mm_147921.1	chr18	65873761	65873961	-	1	NA	NA	NA	375	NM_175012	225642	Mm.20298	NM_175012	ENSMUSG00000024517	Grp	BLP	gastrin releasing peptide	protein-coding	0.015000	0.507463	
mm_15360.1	chr2	156401346	156401546	+	1	NA	NA	NA	-8467	NR_024329	347740	Mm.324242	NR_024329		2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	0.030000	0.597015	
mm_94972.1	chr11	30958913	30959113	+	1	NA	NA	NA	4615	NM_023906	65257	Mm.440539	NM_023906	ENSMUSG00000020305	Asb3	2400011J03Rik|Asb-3	ankyrin repeat and SOCS box-containing 3	protein-coding	0.005000	0.348259	
mm_90299.1	chr10	125966098	125966298	+	1	NA	NA	NA	-21	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0.165000	0.751244	
mm_74180.1	chr8	123477782	123477982	+	1	NA	NA	NA	20	NR_028260	114896	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	0.125000	0.736318	
mm_92350.1	chr10	75892906	75893106	-	1	NA	NA	NA	-392	NM_024440	70377	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	0.030000	0.547264	
mm_116246.1	chr13	33935707	33935907	-	1	NA	NA	NA	-225	NR_040707	68808	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0.080000	0.711443	
mm_16411.1	chr2	180042634	180042834	+	1	NA	NA	NA	251	NM_178750	269397	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	0.150000	0.746269	
mm_23944.1	chr3	84666159	84666359	+	1	NA	NA	NA	67	NM_177260	320782	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.045000	0.577114	
mm_73828.1	chr8	117460129	117460329	+	1	NA	NA	NA	964	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.005000	0.393035	
mm_85545.1	chr9	106685212	106685412	-	1	NA	NA	NA	504	NM_011573	21767	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.070000	0.646766	-94(GTCCCTTTAAGG,-,0.00),-93(TCCCTTTAAGGG,-,0.00),-92(CCCTTTAAGGGC,+,0.00),-91(CCTTTAAGGGCC,+,0.00)
mm_79419.1	chr9	55310522	55310722	+	1	NA	NA	NA	-16327	NM_172923	244886	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.000000	0.487562	
mm_171077.1	chr3	121249758	121249958	-	1	NA	NA	NA	13458	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0.045000	0.522388	
mm_158030.1	chrX	97376361	97376561	-	1	NA	NA	NA	748	NM_001161432	245527	Mm.189270	NM_175540	ENSMUSG00000034457	Eda2r	9430060M22Rik|TNFRSF27|Xedar	ectodysplasin A2 receptor	protein-coding	0.030000	0.562189	
mm_45809.1	chr5	87670819	87671019	-	1	NA	NA	NA	4711	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.015000	0.318408	
mm_155444.1	chrX	73494919	73495119	+	1	NA	NA	NA	-8067	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.005000	0.467662	
mm_56769.1	chr6	116413949	116414149	-	1	NA	NA	NA	47129	NM_009662	11689	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0.025000	0.552239	
mm_122416.1	chr14	41122443	41122643	-	1	NA	NA	NA	-9245	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.025000	0.502488	
mm_50807.1	chr6	54300048	54300248	+	1	NA	NA	NA	-26864	NM_030024	78004	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	0.025000	0.472637	
mm_79583.1	chr9	58202761	58202961	+	1	NA	NA	NA	-36	NR_033522	665268	Mm.451475	NR_033522	ENSMUSG00000057818	1600029O15Rik	-	ribosomal protein L17 pseudogene	pseudo	0.025000	0.562189	
mm_58561.1	chr7	4741746	4741946	+	1	NA	NA	NA	1719	NM_001115018	232811	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	0.030000	0.572139	11(GGTTTTTAAAGC,-,0.00),12(GTTTTTAAAGCA,+,0.00)
mm_38307.1	chr4	136898732	136898932	-	1	NA	NA	NA	12	NM_007572	12259	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	0.035000	0.557214	
mm_96910.1	chr11	70459618	70459818	+	1	NA	NA	NA	96	NM_001029929	574428	Mm.472771	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.085000	0.631841	
mm_151248.1	chr19	53906145	53906345	+	1	NA	NA	NA	2894	NM_001168491	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.025000	0.373134	-30(CCTCATAAAAAG,-,0.00)
mm_102768.1	chr11	68195978	68196178	-	1	NA	NA	NA	-24814	NR_105833	102465219		NR_105833	ENSMUSG00000099174	Mir6406	Gm27981|mmu-mir-6406	microRNA 6406	ncRNA	0.035000	0.601990	
mm_78715.1	chr9	41523768	41523968	+	1	NA	NA	NA	-7557	NR_029790	723892		NR_029790	ENSMUSG00000093011	Mir100	Mirn100|mir-100|mmu-mir-100	microRNA 100	ncRNA	0.005000	0.378109	
mm_78743.1	chr9	42076427	42076627	+	1	NA	NA	NA	47762	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.015000	0.472637	
mm_66602.1	chr7	45459344	45459544	-	1	NA	NA	NA	442	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.050000	0.636816	
mm_155500.1	chrX	73774345	73774545	+	1	NA	NA	NA	40	NM_019684	56504	Mm.111904	NM_019684	ENSMUSG00000002007	Srpk3	Mssk1|Stk23	serine/arginine-rich protein specific kinase 3	protein-coding	0.035000	0.606965	-74(AGCTATAAATGC,-,0.00)
mm_49029.1	chr6	4759617	4759817	+	1	NA	NA	NA	12411	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.000000	0.313433	
mm_30796.1	chr4	19852032	19852232	+	1	NA	NA	NA	33405	NM_028746	74087	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0.000000	0.422886	
mm_11756.1	chr2	38511407	38511607	+	1	NA	NA	NA	-190	NM_021606	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.045000	0.587065	-19(TCTTATAAAGTC,+,0.00)
mm_95320.1	chr11	46437399	46437599	+	1	NA	NA	NA	538	NM_025426	66213	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	0.065000	0.557214	
mm_151838.1	chr19	5721732	5721932	-	1	NA	NA	NA	4485	NM_001114595	114601	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0.020000	0.606965	
mm_131510.1	chr16	17491327	17491527	+	1	NA	NA	NA	-494	NM_001291070	72168	Mm.40038	NM_175178	ENSMUSG00000022763	Aifm3	2810401C16Rik|AI840249|Aifl	apoptosis-inducing factor, mitochondrion-associated 3	protein-coding	0.010000	0.621891	
mm_80320.1	chr9	74952794	74952994	+	1	NA	NA	NA	-159	NM_001113283	235493	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	0.115000	0.646766	
mm_160427.1	chr8	88283124	88283324	+	1	NA	NA	NA	232	NM_001109756	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.020000	0.522388	
mm_67920.1	chr7	99858900	99859100	-	1	NA	NA	NA	-117	NM_025668	66624	Mm.30043	NM_025668	ENSMUSG00000035227	Spcs2	5730406I15Rik|AA408713|mKIAA0102	signal peptidase complex subunit 2 homolog (S. cerevisiae)	protein-coding	0.080000	0.592040	
mm_46179.1	chr5	97111450	97111650	-	1	NA	NA	NA	46	NM_198422	231474	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.145000	0.786070	
mm_167595.1	chr9	48708677	48708877	+	1	NA	NA	NA	-103654	NM_010924	18113	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0.015000	0.492537	
mm_152367.1	chr19	10101715	10101915	-	1	NA	NA	NA	-312	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	0.065000	0.666667	
mm_134208.1	chr16	11175446	11175646	-	1	NA	NA	NA	847	NR_027502	106205	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	0.030000	0.497512	
mm_65222.1	chr7	19699858	19700058	-	1	NA	NA	NA	-770	NM_009696	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.010000	0.417910	
mm_65693.1	chr7	28372534	28372734	-	1	NA	NA	NA	28	NM_138752	101497	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.085000	0.711443	-98(GGATTTTAAAAG,-,0.00),-97(GATTTTAAAAGC,-,0.00)
mm_51193.1	chr6	71224378	71224578	+	1	NA	NA	NA	24590	NM_017399	14080	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0.005000	0.472637	
mm_102810.1	chr11	68947293	68947493	-	1	NA	NA	NA	9465	NM_177566	442801	Mm.376147	NM_177566	ENSMUSG00000052921	Arhgef15	D130071N09|D530030K12Rik|E5	Rho guanine nucleotide exchange factor (GEF) 15	protein-coding	0.030000	0.611940	
mm_7712.1	chr1	130462896	130463096	-	1	NA	NA	NA	-252	NM_010016	13136	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0.015000	0.562189	
mm_151959.1	chr19	5801404	5801604	-	1	NA	NA	NA	1168	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.000000	0.353234	
mm_11295.1	chr2	30134595	30134795	+	1	NA	NA	NA	949	NM_146252	70296	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0.015000	0.447761	84(CCTTTTCTGCCC,+,0.00)
mm_30514.1	chr3	158171703	158171903	-	1	NA	NA	NA	135121	NM_001289524	67144	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	0.005000	0.512438	
mm_89734.1	chr10	99000705	99000905	+	1	NA	NA	NA	85653	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.015000	0.378109	77(CTTTATATAGAA,+,0.00)
mm_111063.1	chr12	80114379	80114579	-	1	NA	NA	NA	-1466	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.115000	0.626866	
mm_171747.1	chr4	98733542	98733742	+	1	NA	NA	NA	6888	NM_001081202	381591	Mm.34340	NM_001081202	ENSMUSG00000087166	L1td1	AA546746|AB211064|D76865|ECAT11	LINE-1 type transposase domain containing 1	protein-coding	0.015000	0.532338	
mm_19240.1	chr2	84715182	84715382	-	1	NA	NA	NA	-118	NM_144887	228136	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0.175000	0.736318	
mm_138461.1	chr17	35142170	35142370	+	1	NA	NA	NA	6556	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.005000	0.572139	
mm_87816.1	chr10	60302015	60302215	+	1	NA	NA	NA	17654	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.005000	0.507463	-4(GGCCTTTAGAGC,-,0.00),-3(GCCTTTAGAGCG,+,0.00)
mm_127901.1	chr15	9507342	9507542	-	1	NA	NA	NA	22434	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.000000	0.328358	
mm_63119.1	chr7	122821518	122821718	+	1	NA	NA	NA	148841	NR_045614	73951	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.000000	0.437811	
mm_160117.1	chr7	27396325	27396525	-	1	NA	NA	NA	128	NM_001199236	80297	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0.140000	0.815920	
mm_22972.1	chr3	32708661	32708861	+	1	NA	NA	NA	215	NM_019673	56456	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0.085000	0.626866	
mm_29660.1	chr3	122559008	122559208	-	1	NA	NA	NA	-17427	NR_106117	102465764		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.010000	0.353234	
mm_110141.1	chr12	26448113	26448313	-	1	NA	NA	NA	8239	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.343284	
mm_68136.1	chr7	102239508	102239708	-	1	NA	NA	NA	10510	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.020000	0.562189	
mm_116266.1	chr13	34628222	34628422	-	1	NA	NA	NA	24359	NM_025831	66895	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0.030000	0.477612	
mm_94842.1	chr11	23666388	23666588	+	1	NA	NA	NA	512	NM_028304	74467	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.035000	0.532338	
mm_51050.1	chr6	65631139	65631339	+	1	NA	NA	NA	-40372	NM_172399	68169	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding	0.020000	0.502488	
mm_5320.1	chr1	22805809	22806009	-	1	NA	NA	NA	-185	NM_001012624	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.120000	0.766169	
mm_132613.1	chr16	38712076	38712276	+	1	NA	NA	NA	859	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.015000	0.497512	
mm_57216.1	chr6	122933899	122934099	-	1	NA	NA	NA	12151	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.005000	0.437811	
mm_128208.1	chr15	36140300	36140500	-	1	NA	NA	NA	0	NM_001195748	626596	Mm.321798	NM_001195748	ENSMUSG00000037627	Rgs22	-	regulator of G-protein signalling 22	protein-coding	0.100000	0.756219	
mm_55672.1	chr6	72550754	72550954	-	1	NA	NA	NA	1207	NM_001271395	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.030000	0.522388	
mm_30439.1	chr3	153633423	153633623	-	1	NA	NA	NA	91610	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.005000	0.393035	-20(TAGTTTATAAGC,-,0.00)
mm_18394.1	chr2	60210341	60210541	-	1	NA	NA	NA	505	NM_020575	57438	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.060000	0.587065	
mm_62703.1	chr7	110237780	110237980	+	1	NA	NA	NA	16177	NM_009302	20947	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.010000	0.502488	-34(ATGCTTAAAAGG,-,0.00)
mm_143285.1	chr17	65864559	65864759	-	1	NA	NA	NA	20264	NM_001198949	19765	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.005000	0.393035	31(TTCTCTAAAAAG,-,0.00)
mm_19733.1	chr2	104494468	104494668	-	1	NA	NA	NA	-79	NM_001145824	15259	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.170000	0.815920	
mm_88976.1	chr10	81525281	81525481	+	1	NA	NA	NA	-1156	NM_010304	14676	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.010000	0.631841	
mm_23611.1	chr3	65528318	65528518	+	1	NA	NA	NA	-29	NM_178892	99929	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	0.110000	0.716418	
mm_5869.1	chr1	53783711	53783911	-	1	NA	NA	NA	1404	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.000000	0.318408	
mm_148936.1	chr19	7025545	7025745	+	1	NA	NA	NA	-6176	NM_153795	108101	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.005000	0.437811	
mm_128777.1	chr15	66792694	66792894	-	1	NA	NA	NA	39035	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.005000	0.442786	
mm_58675.1	chr7	11514187	11514387	+	1	NA	NA	NA	116372	NM_001110316	665902	Mm.425380	NM_001110316	ENSMUSG00000070828	Zscan4f	C330039H09Rik	zinc finger and SCAN domain containing 4F	protein-coding	0.005000	0.462687	-34(CGCTATAAAAGG,-,0.00)
mm_141043.1	chr17	25392392	25392592	-	1	NA	NA	NA	21939	NM_012034	26945	Mm.180108	NM_012034	ENSMUSG00000033200	Tpsg1	Prss31|Tmt	tryptase gamma 1	protein-coding	0.050000	0.577114	
mm_40043.1	chr5	33828151	33828351	+	1	NA	NA	NA	-14861	NM_175231	107823	Mm.19892	NM_175231	ENSMUSG00000057406	Whsc1	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|NSD2|Whsc1l|mKIAA1090	Wolf-Hirschhorn syndrome candidate 1 (human)	protein-coding	0.010000	0.452736	
mm_117952.1	chr13	99444268	99444468	-	1	NA	NA	NA	-31542	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.020000	0.482587	
mm_6001.1	chr1	58972595	58972795	-	1	NA	NA	NA	787	NM_172406	70827	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	0.005000	0.353234	
mm_111394.1	chr12	90728022	90728222	-	1	NA	NA	NA	10915	NM_010050	13371	Mm.21389	NM_010050	ENSMUSG00000007682	Dio2	5DII|AI324267|DIOII	deiodinase, iodothyronine, type II	protein-coding	0.000000	0.333333	
mm_19274.1	chr2	85196603	85196803	-	1	NA	NA	NA	-4	NM_001033346	241528	Mm.291095	NM_001033346	ENSMUSG00000075224	Lrrc55	A330097E02Rik|Gm351	leucine rich repeat containing 55	protein-coding	0.010000	0.577114	
mm_19130.1	chr2	80129197	80129397	-	1	NA	NA	NA	115	NM_001159582	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.025000	0.442786	
mm_86478.1	chr10	4710077	4710277	+	1	NA	NA	NA	19	NM_001302533	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.040000	0.552239	
mm_131629.1	chr16	20141001	20141201	+	1	NA	NA	NA	38	NM_001145930	208146	Mm.390895	NM_001033237	ENSMUSG00000041215	Yeats2	BC042768|mKIAA1197	YEATS domain containing 2	protein-coding	0.185000	0.796020	
mm_169258.1	chr1	37997111	37997311	-	1	NA	NA	NA	-3	NM_172054	98258	Mm.28438	NM_172054	ENSMUSG00000058407	Txndc9	AI098020|APACD	thioredoxin domain containing 9	protein-coding	0.065000	0.547264	
mm_57247.1	chr6	123283270	123283470	-	1	NA	NA	NA	6501	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.373134	41(CTTTTTAGACTG,+,0.00)
mm_78684.1	chr9	40798378	40798578	+	1	NA	NA	NA	-2795	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.010000	0.552239	
mm_146475.1	chr18	89197095	89197295	+	1	NA	NA	NA	-232	NM_178687	225825	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.010000	0.422886	
mm_156011.1	chrX	107088359	107088559	+	1	NA	NA	NA	-876	NM_172435	78826	Mm.74639	NM_172435	ENSMUSG00000050921	P2ry10	5830408N17Rik|Lypsr2|P2Y10	purinergic receptor P2Y, G-protein coupled 10	protein-coding	0.000000	0.383085	
mm_135673.1	chr16	52417531	52417731	-	1	NA	NA	NA	35450	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.368159	
mm_102507.1	chr11	60727163	60727363	-	1	NA	NA	NA	0	NM_022009	14248	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	0.120000	0.751244	
mm_158784.1	chrX	167207375	167207575	-	1	NA	NA	NA	1743	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.030000	0.407960	
mm_153525.1	chr19	41774478	41774678	-	1	NA	NA	NA	27506	NM_001163495	71085	Mm.21646	NM_027667	ENSMUSG00000025154	Arhgap19	4933411B03Rik|AI120128|AW546831|mFLJ00368	Rho GTPase activating protein 19	protein-coding	0.025000	0.512438	
mm_62508.1	chr7	102106959	102107159	+	1	NA	NA	NA	5316	NM_009710	11870	Mm.261071	NM_009710	ENSMUSG00000030996	Art1	ADPRT|ARTC1|Yac-1	ADP-ribosyltransferase 1	protein-coding	0.070000	0.661692	
mm_104081.1	chr11	86598531	86598731	-	1	NA	NA	NA	-14473	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.000000	0.378109	-34(CACCCTATAAAG,-,0.00),-32(CCCTATAAAGTC,+,0.00)
mm_36334.1	chr4	72193247	72193447	-	1	NA	NA	NA	7546	NM_011599	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.010000	0.398010	-69(GTGTATTTAAAG,-,0.00),-3(TTTTTTAAAGCA,+,0.00)
mm_116587.1	chr13	47274397	47274597	-	1	NA	NA	NA	80494	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.010000	0.537313	-34(TGCTATAAAAGG,-,0.00)
mm_118542.1	chr14	16575532	16575732	+	1	NA	NA	NA	-156	NM_001289762	218772	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	0.070000	0.626866	-35(GCGCTTAAAAAC,-,0.00),-33(GCTTAAAAACTC,+,0.00)
mm_98001.1	chr11	84173383	84173583	+	1	NA	NA	NA	-6007	NM_001037932	628813	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690|OTTMUSG00000000997	predicted gene 11437	protein-coding	0.000000	0.427861	
mm_117772.1	chr13	96542461	96542661	-	1	NA	NA	NA	18	NM_012048	27015	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	0.095000	0.671642	87(GCGCCTAAAGGC,-,0.00)
mm_5858.1	chr1	53751275	53751475	-	1	NA	NA	NA	33840	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.000000	0.547264	
mm_87232.1	chr10	40629920	40630120	+	1	NA	NA	NA	9	NR_133568	70503	Mm.252862	NM_027442	ENSMUSG00000063428	Ddo	5330420D20Rik|5730402C02Rik|AI467244	D-aspartate oxidase	protein-coding	0.005000	0.472637	
mm_134035.1	chr16	5040446	5040646	-	1	NA	NA	NA	9364	NM_001079814	74022	Mm.21652	NM_028720	ENSMUSG00000022536	Glyr1	2810419J22Rik|3930401K13Rik|AW545332|Npac	glyoxylate reductase 1 homolog (Arabidopsis)	protein-coding	0.000000	0.398010	
mm_27381.1	chr3	50443679	50443879	-	1	NA	NA	NA	-166	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.422886	-39(CCCTCTTTAAGA,-,0.00)
mm_157471.1	chrX	47892461	47892661	-	1	NA	NA	NA	-9	NM_001290708	93761	Mm.229151	NM_053123	ENSMUSG00000031099	Smarca1	5730494M04Rik|Snf2l	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding	0.050000	0.636816	
mm_79820.1	chr9	64385552	64385752	+	1	NA	NA	NA	26	NM_001134399	214058	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	0.070000	0.716418	
mm_170710.1	chr2	14295647	14295847	+	1	NA	NA	NA	34744	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.015000	0.432836	
mm_10514.1	chr2	16356498	16356698	+	1	NA	NA	NA	294	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.070000	0.626866	
mm_172374.1	chr7	126345605	126345805	-	1	NA	NA	NA	22340	NR_106025	102466797		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.005000	0.417910	
mm_120170.1	chr14	60784517	60784717	+	1	NA	NA	NA	51	NR_040642	70478	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0.120000	0.691542	
mm_134565.1	chr16	20354615	20354815	-	1	NA	NA	NA	-29311	NM_183158	224044	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.000000	0.343284	
mm_36362.1	chr4	76332366	76332566	-	1	NA	NA	NA	-1054180	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.000000	0.283582	
mm_24608.1	chr3	93446100	93446300	+	1	NA	NA	NA	3870	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.075000	0.597015	
mm_141630.1	chr17	32917231	32917431	-	1	NA	NA	NA	-2	NM_001204333	64385	Mm.486449	NM_022434	ENSMUSG00000024292	Cyp4f14	1300014O15Rik|cyp4f-14	cytochrome P450, family 4, subfamily f, polypeptide 14	protein-coding	0.000000	0.557214	
mm_123767.1	chr14	70211786	70211986	-	1	NA	NA	NA	-4215	NM_011366	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.025000	0.492537	
mm_31461.1	chr4	49059241	49059441	+	1	NA	NA	NA	-121	NM_178756	272031	Mm.299460	NM_178756	ENSMUSG00000063446	Plppr1	E130309F12Rik|Lppr1|PRG-3|mKIAA4247	phospholipid phosphatase related 1	protein-coding	0.070000	0.641791	
mm_27423.1	chr3	51518261	51518461	-	1	NA	NA	NA	34395	NM_016858	19338	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.010000	0.487562	
mm_157984.1	chrX	94150535	94150735	-	1	NA	NA	NA	-27228	NM_001044386	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	0.050000	0.577114	
mm_37921.1	chr4	132790781	132790981	-	1	NA	NA	NA	5483	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.010000	0.328358	74(CACCATAAGAGG,-,0.00)
mm_122447.1	chr14	45295797	45295997	-	1	NA	NA	NA	22675	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.005000	0.318408	
mm_99846.1	chr11	109361968	109362168	+	1	NA	NA	NA	-726	NM_010303	14674	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0.030000	0.517413	
mm_105143.1	chr11	101459902	101460102	-	1	NA	NA	NA	6197	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.015000	0.646766	
mm_131575.1	chr16	18388919	18389119	+	1	NA	NA	NA	-3544	NM_001272031	11877	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velo-cardio-facial syndrome	protein-coding	0.015000	0.547264	
mm_80725.1	chr9	92457741	92457941	+	1	NA	NA	NA	463	NM_178711	235527	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	0.100000	0.726368	
mm_171423.1	chr4	133967804	133968004	-	1	NA	NA	NA	87	NM_016957	15331	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	0.110000	0.661692	-35(CGCTATAAAAAC,-,0.00),-24(CTTTATAAACCC,+,0.00)
mm_72131.1	chr8	71881884	71882084	+	1	NA	NA	NA	-84	NM_145624	236193	Mm.290790	NM_145624	ENSMUSG00000056019	Zfp709	BC021921|GIOT-4|HIT-40	zinc finger protein 709	protein-coding	0.070000	0.611940	
mm_52239.1	chr6	104782632	104782832	+	1	NA	NA	NA	289688	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding	0.005000	0.298507	
mm_7072.1	chr1	88008438	88008638	-	1	NA	NA	NA	13	NM_001198573	227334	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	0.075000	0.601990	
mm_68404.1	chr7	109616262	109616462	-	1	NA	NA	NA	206	NR_037617	76954	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.020000	0.582090	
mm_103895.1	chr11	83575210	83575410	-	1	NA	NA	NA	3326	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.005000	0.402985	
mm_115947.1	chr13	23710809	23711009	-	1	NA	NA	NA	-55	NM_010424	15216	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0.010000	0.467662	
mm_141561.1	chr17	32224096	32224296	-	1	NA	NA	NA	-17724	NR_102329	100043434		NR_102329		Gm4432	-	predicted gene 4432	pseudo	0.015000	0.502488	
mm_6136.1	chr1	64734294	64734494	-	1	NA	NA	NA	3356	NM_001042659	14367	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0.005000	0.373134	
mm_148036.1	chr18	70244323	70244523	-	1	NA	NA	NA	161	NM_029346	75577	Mm.58214	NM_029346	ENSMUSG00000024512	Dynap	2310002L13Rik	dynactin associated protein	protein-coding	0.030000	0.457711	
mm_105187.1	chr11	101984635	101984835	-	1	NA	NA	NA	56	NM_028207	72349	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	0.115000	0.716418	
mm_33505.1	chr4	130913029	130913229	+	1	NA	NA	NA	-205	NM_010686	16792	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3	lysosomal-associated protein transmembrane 5	protein-coding	0.020000	0.577114	-83(TTCTAGAAAAGG,-,0.00),-34(GCATATAAATGC,-,0.00)
mm_23834.1	chr3	81995603	81995803	+	1	NA	NA	NA	-1219	NM_021370	58170	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	0.015000	0.407960	-33(GTGCATAAAGGG,-,0.00)
mm_6649.1	chr1	79761623	79761823	-	1	NA	NA	NA	46	NM_001111279	69368	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	0.125000	0.731343	
mm_149627.1	chr19	17136714	17136914	+	1	NA	NA	NA	180696	NM_181348	353211	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.030000	0.527363	
mm_149512.1	chr19	11976927	11977127	+	1	NA	NA	NA	11183	NM_001033174	76303	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.005000	0.368159	
mm_156484.1	chrX	144335709	144335909	+	1	NA	NA	NA	17843	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.015000	0.452736	-69(GTCTTTTAAAAA,-,0.00)
mm_57607.1	chr6	128028817	128029017	-	1	NA	NA	NA	114661	NM_175414	109246	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597	tetraspanin 9	protein-coding	0.010000	0.477612	
mm_57805.1	chr6	129385957	129386157	-	1	NA	NA	NA	-183	NM_001204223	71183	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	0.000000	0.442786	
mm_172578.1	chr8	119602537	119602737	-	1	NA	NA	NA	2603	NM_021441	21341	Mm.41977	NM_021441	ENSMUSG00000031832	Taf1c	Tafi95|mTAFI95	TATA-box binding protein associated factor, RNA polymerase I, C	protein-coding	0.065000	0.611940	
mm_41870.1	chr5	104459549	104459749	+	1	NA	NA	NA	192	NM_008861	18764	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	0.150000	0.756219	
mm_147469.1	chr18	46717006	46717206	-	1	NA	NA	NA	11236	NM_033037	12583	Mm.241056	NM_033037	ENSMUSG00000033022	Cdo1	1300002L19Rik|Cdo|D18Ucla3	cysteine dioxygenase 1, cytosolic	protein-coding	0.010000	0.328358	
mm_60087.1	chr7	34655189	34655389	+	1	NA	NA	NA	-2448	NM_146188	233107	Mm.486198	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	0.105000	0.761194	
mm_111725.1	chr12	103765642	103765842	-	1	NA	NA	NA	7891	NM_009246	20703	Mm.439695	NM_009246	ENSMUSG00000071177	Serpina1d	AI118301|Dom4|PI4|Spi1-4	serine (or cysteine) peptidase inhibitor, clade A, member 1D	protein-coding	0.020000	0.547264	
mm_12017.1	chr2	58153779	58153979	+	1	NA	NA	NA	6243	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.015000	0.452736	
mm_95720.1	chr11	54522804	54523004	+	1	NA	NA	NA	59	NM_001252496	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.115000	0.676617	
mm_137098.1	chr17	21566916	21567116	+	1	NA	NA	NA	-30	NM_001002008	381066	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	0.050000	0.597015	
mm_136715.1	chr17	7931283	7931483	+	1	NA	NA	NA	5383	NM_145968	72536	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik	T cell activation Rho GTPase activating protein	protein-coding	0.020000	0.532338	-85(GCTTTTAAGGAG,+,0.00)
mm_49090.1	chr6	7301825	7302025	+	1	NA	NA	NA	-252960	NM_001311060	21333	Mm.1440	NM_009311	ENSMUSG00000061762	Tac1	4930528L02Rik|NK-1|NK1|Nkna|PPT-A|PPTA|SP	tachykinin 1	protein-coding	0.000000	0.373134	
mm_1641.1	chr1	74542800	74543000	+	1	NA	NA	NA	11	NM_001081456	18802	Mm.290731	NM_148937	ENSMUSG00000026173	Plcd4	4921507K24Rik	phospholipase C, delta 4	protein-coding	0.030000	0.582090	-93(GGCCTTTAAGAG,-,0.00),-91(CCTTTAAGAGTT,+,0.00)
mm_71417.1	chr8	46488298	46488498	+	1	NA	NA	NA	-2568	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.015000	0.507463	
mm_74473.1	chr8	4259055	4259255	-	1	NA	NA	NA	119	NM_183315	330695	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	0.090000	0.721393	
mm_72277.1	chr8	75100128	75100328	+	1	NA	NA	NA	6610	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.000000	0.537313	
mm_167399.1	chr8	95311542	95311742	+	1	NA	NA	NA	44	NM_199455	73407	Mm.472783	NM_028532	ENSMUSG00000090206	Tepp	1700055M20Rik	testis, prostate and placenta expressed	protein-coding	0.010000	0.542289	
mm_22453.1	chr3	3187895	3188095	+	1	NA	NA	NA	-320035	NM_013920	30942	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.000000	0.402985	
mm_109693.1	chr12	113146403	113146603	+	1	NA	NA	NA	-5509	NM_007763	12925	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	0.035000	0.572139	
mm_135974.1	chr16	75016330	75016530	-	1	NA	NA	NA	569631	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.005000	0.472637	
mm_15380.1	chr2	156529943	156530143	+	1	NA	NA	NA	-17533	NM_026661	68295	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	0.005000	0.407960	2(CACCTTTTAAGG,-,0.00),3(ACCTTTTAAGGG,-,0.00),4(CCTTTTAAGGGA,+,0.00),5(CTTTTAAGGGAC,+,0.00)
mm_164577.1	chr17	24699703	24699903	+	1	NA	NA	NA	3569	NM_027988	71893	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	0.005000	0.601990	
mm_98251.1	chr11	88293960	88294160	+	1	NA	NA	NA	17	NM_028859	74297	Mm.207320	NM_028859	ENSMUSG00000034031	Ccdc182	1700106J16Rik	coiled-coil domain containing 182	protein-coding	0.010000	0.462687	
mm_116074.1	chr13	27667937	27668137	-	1	NA	NA	NA	-1	NM_011168	19114	Mm.153999	NM_011168	ENSMUSG00000046899	Prl7a2	Ghd18|PLP-F|Prlpf	prolactin family 7, subfamily a, member 2	protein-coding	0.010000	0.437811	-33(GCCTATATAGGA,+,0.00),-33(GCCTATATAGGA,-,0.00)
mm_156785.1	chrX	162500248	162500448	+	1	NA	NA	NA	143310	NM_001290633	194590	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	0.010000	0.427861	
mm_14071.1	chr2	122765265	122765465	+	1	NA	NA	NA	6	NM_001162503	59010	Mm.28986	NM_021507	ENSMUSG00000005803	Sqrdl	0610039J17Rik|4930557M22Rik|SQOR	sulfide quinone reductase-like (yeast)	protein-coding	0.090000	0.726368	
mm_9271.1	chr1	171633803	171634003	-	1	NA	NA	NA	7997	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.427861	
mm_142016.1	chr17	35200441	35200641	-	1	NA	NA	NA	1466	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.025000	0.592040	
mm_72783.1	chr8	86745558	86745758	+	1	NA	NA	NA	-41	NR_027829	666945	Mm.391806	NR_027829		Gm10638	ENSMUSG00000074178	predicted gene 10638	ncRNA	0.165000	0.771144	
mm_13653.1	chr2	114054755	114054955	+	1	NA	NA	NA	459	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.005000	0.412935	85(GCATCTAAATGG,-,0.00)
mm_98396.1	chr11	94321992	94322192	+	1	NA	NA	NA	-181	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.105000	0.706468	
mm_47537.1	chr5	124249617	124249817	-	1	NA	NA	NA	43	NM_011256	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.185000	0.815920	
mm_28779.1	chr3	95989305	95989505	-	1	NA	NA	NA	3895	NR_045872	668224	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0.040000	0.616915	
mm_168767.1	chr12	12911889	12912089	+	1	NA	NA	NA	29847	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.040000	0.502488	
mm_158945.1	chr1	83159510	83159710	+	1	NA	NA	NA	-152	NR_027636	71227	Mm.256482	NM_027725	ENSMUSG00000053161	Daw1	4930563E19Rik|4933429D11Rik|Wdr69|b2b1116Clo|b2b1584Clo	dynein assembly factor with WDR repeat domains 1	protein-coding	0.020000	0.477612	
mm_72657.1	chr8	84847144	84847344	+	1	NA	NA	NA	-313	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.075000	0.572139	
mm_47020.1	chr5	115489914	115490114	-	1	NA	NA	NA	-5530	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.075000	0.572139	
mm_83476.1	chr9	45828549	45828749	-	1	NA	NA	NA	-11	NM_001081373	214552	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	0.060000	0.656716	
mm_49495.1	chr6	29735547	29735747	+	1	NA	NA	NA	150	NM_176996	319757	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	0.095000	0.756219	28(CGGTTTTAATGG,-,0.00),30(GTTTTAATGGTG,+,0.00)
mm_27531.1	chr3	57501689	57501889	-	1	NA	NA	NA	74087	NM_133784	97064	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0.025000	0.522388	
mm_129715.1	chr15	81871577	81871777	-	1	NA	NA	NA	215	NM_026737	68479	Mm.271715	NM_026737	ENSMUSG00000061360	Phf5a	1110007B08Rik	PHD finger protein 5A	protein-coding	0.060000	0.597015	
mm_81497.1	chr9	110032085	110032285	+	1	NA	NA	NA	-19836	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.005000	0.432836	
mm_77727.1	chr8	126849898	126850098	-	1	NA	NA	NA	95923	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.025000	0.502488	
mm_54281.1	chr6	29212205	29212405	-	1	NA	NA	NA	-8	NM_011829	23917	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine 5'-phosphate dehydrogenase 1	protein-coding	0.130000	0.805970	
mm_76500.1	chr8	86746008	86746208	-	1	NA	NA	NA	-102	NM_009172	20437	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	seven in absentia 1A	protein-coding	0.185000	0.776119	
mm_3782.1	chr1	156672785	156672985	+	1	NA	NA	NA	1454	NM_023141	30935	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.035000	0.577114	
mm_43128.1	chr5	125300318	125300518	+	1	NA	NA	NA	40676	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.030000	0.527363	-59(CCCTTTATGGGA,+,0.00),30(GTTCATAAAAGC,-,0.00)
mm_98673.1	chr11	96283962	96284162	+	1	NA	NA	NA	2157	NM_010461	15416	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	0.050000	0.651741	
mm_161147.1	chr13	22354273	22354473	+	1	NA	NA	NA	27	NM_134220	171254	Mm.377208	NM_134220	ENSMUSG00000095125	Vmn1r198	V1ri3	vomeronasal 1 receptor 198	protein-coding	0.010000	0.383085	
mm_127862.1	chr15	8351552	8351752	-	1	NA	NA	NA	92811	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.015000	0.447761	31(CTCCATAAAAAA,-,0.00)
mm_47962.1	chr5	135713419	135713619	-	1	NA	NA	NA	22370	NR_106001	102466791		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.015000	0.512438	
mm_94345.1	chr11	4873883	4874083	+	1	NA	NA	NA	-20	NM_008698	18082	Mm.293716	NM_008698	ENSMUSG00000034285	Nipsnap1	-	nipsnap homolog 1 (C. elegans)	protein-coding	0.060000	0.641791	
mm_84321.1	chr9	63837966	63838166	-	1	NA	NA	NA	-80072	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.000000	0.497512	
mm_90396.1	chr10	127323691	127323891	+	1	NA	NA	NA	64	NM_146011	216445	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.025000	0.552239	
mm_39328.1	chr5	8659925	8660125	+	1	NA	NA	NA	-67	NM_011076	18671	Mm.207354	NM_011076	ENSMUSG00000040584	Abcb1a	Abcb4|Evi32|Mdr1a|Mdr3|P-gp|Pgp|Pgy-3|Pgy3|mdr-3	ATP-binding cassette, sub-family B (MDR/TAP), member 1A	protein-coding	0.030000	0.532338	
mm_14465.1	chr2	131261945	131262145	+	1	NA	NA	NA	-455	NM_153501	74450	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0.015000	0.482587	
mm_101746.1	chr11	43379288	43379488	-	1	NA	NA	NA	-4927	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.020000	0.447761	
mm_6192.1	chr1	65158948	65159148	-	1	NA	NA	NA	20094	NM_010497	15926	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.010000	0.462687	
mm_32608.1	chr4	112072566	112072766	+	1	NA	NA	NA	650	NM_001347180	320640	Mm.253775	NM_178786	ENSMUSG00000055960	Skint4	9530098N22Rik	selection and upkeep of intraepithelial T cells 4	protein-coding	0.010000	0.407960	
mm_126030.1	chr15	76712179	76712379	+	1	NA	NA	NA	1539	NM_145471	223664	Mm.277582	NM_145471	ENSMUSG00000033728	Lrrc14	E130306I01Rik|mKIAA0014	leucine rich repeat containing 14	protein-coding	0.015000	0.402985	28(GACTATAAATAG,-,0.00)
mm_83866.1	chr9	54824791	54824991	-	1	NA	NA	NA	-38864	NM_022655	64602	Mm.208991	NM_022655	ENSMUSG00000032293	Ireb2	D9Ertd85e|Irp2	iron responsive element binding protein 2	protein-coding	0.025000	0.532338	
mm_104914.1	chr11	99740023	99740223	-	1	NA	NA	NA	32790	NM_001126322	100040276	Mm.475095	NM_001126322	ENSMUSG00000078668	Gm11595	OTTMUSG00000002543	predicted gene 11595	protein-coding	0.000000	0.507463	-34(GGGTATAAAAAG,-,0.00)
mm_77396.1	chr8	120332926	120333126	-	1	NA	NA	NA	-104796	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.020000	0.512438	
mm_67206.1	chr7	74302794	74302994	-	1	NA	NA	NA	251886	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.000000	0.427861	
mm_148709.1	chr19	5802096	5802296	+	1	NA	NA	NA	476	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.040000	0.407960	
mm_65492.1	chr7	25689031	25689231	-	1	NA	NA	NA	2129	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.050000	0.597015	
mm_8894.1	chr1	162898326	162898526	-	1	NA	NA	NA	286	NM_018881	55990	Mm.10929	NM_018881	ENSMUSG00000040170	Fmo2	2310008D08Rik|2310042I22Rik|AW107733	flavin containing monooxygenase 2	protein-coding	0.010000	0.427861	
mm_159718.1	chr5	33821329	33821529	+	1	NA	NA	NA	-21683	NM_175231	107823	Mm.19892	NM_175231	ENSMUSG00000057406	Whsc1	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|NSD2|Whsc1l|mKIAA1090	Wolf-Hirschhorn syndrome candidate 1 (human)	protein-coding	0.145000	0.766169	
mm_154543.1	chrM	14482	14682	-	1	NA	NA	NA	NA	NA									0.025000	0.447761	48(GCCTATAAATGC,-,0.00)
mm_69262.1	chr7	127893373	127893573	-	1	NA	NA	NA	2144	NM_178600	27973	Mm.29703	NM_178600	ENSMUSG00000096145	Vkorc1	D7Wsu86e	vitamin K epoxide reductase complex, subunit 1	protein-coding	0.025000	0.497512	
mm_26417.1	chr3	142611136	142611336	+	1	NA	NA	NA	-9427	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.005000	0.358209	
mm_33783.1	chr4	134897751	134897951	+	1	NA	NA	NA	17065	NM_027935	71817	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0.025000	0.388060	-30(CTATATATAAGG,-,0.00)
mm_53784.1	chr6	146577823	146578023	+	1	NA	NA	NA	12	NM_026218	67529	Mm.333499	NM_026218	ENSMUSG00000040242	Fgfr1op2	1500031J01Rik	FGFR1 oncogene partner 2	protein-coding	0.110000	0.696517	
mm_71285.1	chr8	40920765	40920965	+	1	NA	NA	NA	-5368	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.005000	0.442786	
mm_45839.1	chr5	87695964	87696164	-	1	NA	NA	NA	3361	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.000000	0.338308	
mm_162017.1	chr19	45075057	45075257	+	1	NA	NA	NA	-982	NM_178929	107250	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.080000	0.626866	46(GCCTATATAAGC,-,0.00),70(TTGCCTAAAAGC,-,0.00)
mm_141959.1	chr17	35118452	35118652	-	1	NA	NA	NA	2740	NM_001303476	13001	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	0.045000	0.557214	
mm_117963.1	chr13	99516418	99516618	-	1	NA	NA	NA	84	NM_008634	17755	Mm.4173	NM_008634	ENSMUSG00000052727	Map1b	A230055D22|AI843217|LC1|MAP5|Mtap-5|Mtap1b|Mtap5	microtubule-associated protein 1B	protein-coding	0.095000	0.681592	
mm_136994.1	chr17	17402758	17402958	+	1	NA	NA	NA	172	NM_025681	66643	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.005000	0.477612	
mm_123105.1	chr14	55882679	55882879	-	1	NA	NA	NA	1477	NM_019820	56410	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0.025000	0.567164	
mm_150636.1	chr19	41483112	41483312	+	1	NA	NA	NA	-42040	NM_001326287	627352	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0.135000	0.741294	
mm_106983.1	chr12	9580746	9580946	+	1	NA	NA	NA	6404	NM_011859	23967	Mm.45055	NM_011859	ENSMUSG00000048387	Osr1	Odd1|Osr	odd-skipped related 1 (Drosophila)	protein-coding	0.055000	0.537313	
mm_131788.1	chr16	22898732	22898932	+	1	NA	NA	NA	-4446	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.035000	0.582090	
mm_128239.1	chr15	36608530	36608730	-	1	NA	NA	NA	343	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.120000	0.716418	
mm_141339.1	chr17	28517398	28517598	-	1	NA	NA	NA	-13363	NM_026290	67645	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.035000	0.547264	
mm_96974.1	chr11	70651982	70652182	+	1	NA	NA	NA	2568	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.015000	0.512438	
mm_121393.1	chr14	119137448	119137648	+	1	NA	NA	NA	-717	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.055000	0.621891	
mm_132601.1	chr16	38558574	38558774	+	1	NA	NA	NA	-24	NM_001205286	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.000000	0.378109	
mm_19974.1	chr2	118256851	118257051	-	1	NA	NA	NA	15	NM_027759	71313	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	0.060000	0.547264	
mm_129163.1	chr15	76243288	76243488	-	1	NA	NA	NA	52	NM_001163576	671535	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0.005000	0.552239	
mm_110230.1	chr12	29059523	29059723	-	1	NA	NA	NA	307795	NM_201357	380752	Mm.273724	NM_201357	ENSMUSG00000036613	Tssc1	D12Ertd604e|Eipr1	tumor suppressing subtransferable candidate 1	protein-coding	0.025000	0.477612	
mm_51426.1	chr6	78428056	78428256	+	1	NA	NA	NA	2173	NM_009042	19692	Mm.142731	NM_009042	ENSMUSG00000059654	Reg1	-	regenerating islet-derived 1	protein-coding	0.015000	0.452736	
mm_79041.1	chr9	46210617	46210817	+	1	NA	NA	NA	-17913	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.040000	0.621891	
mm_26089.1	chr3	136713608	136713808	+	1	NA	NA	NA	43642	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.005000	0.343284	
mm_17170.1	chr2	25311416	25311616	-	1	NA	NA	NA	7671	NM_008169	14810	Mm.278672	NM_008169	ENSMUSG00000026959	Grin1	GluN1|GluRdelta1|GluRzeta1|M100174|NMD-R1|NMDAR1|NR1|Nmdar|Rgsc174	glutamate receptor, ionotropic, NMDA1 (zeta 1)	protein-coding	0.055000	0.582090	
mm_98274.1	chr11	89015442	89015642	+	1	NA	NA	NA	16139	NM_009546	217069	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.005000	0.522388	
mm_85450.1	chr9	104327924	104328124	-	1	NA	NA	NA	9698	NM_019807	56318	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	0.005000	0.442786	
mm_88396.1	chr10	76575548	76575748	+	1	NA	NA	NA	0	NM_080845	14317	Mm.36278	NM_080845	ENSMUSG00000001155	Ftcd	-	formiminotransferase cyclodeaminase	protein-coding	0.005000	0.537313	-32(AGGTATAAAGGC,-,0.00)
mm_104093.1	chr11	86683424	86683624	-	1	NA	NA	NA	298	NM_029478	75909	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0.045000	0.577114	
mm_64830.1	chr7	12818751	12818951	-	1	NA	NA	NA	9	NM_026046	67230	Mm.333574	NM_026046	ENSMUSG00000057894	Zfp329	2810439M05Rik|4632409L22Rik|ZNF329	zinc finger protein 329	protein-coding	0.075000	0.601990	
mm_30084.1	chr3	138131269	138131469	-	1	NA	NA	NA	8	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	0.015000	0.512438	
mm_168817.1	chr12	22030738	22030938	-	1	NA	NA	NA	125808	NR_136920	100043416		NM_001004167	ENSMUSG00000093846	Gm4425	EG432637|Gm5433	KRAB-domain protein pseudogene	pseudo	0.125000	0.741294	
mm_61154.1	chr7	58658296	58658496	+	1	NA	NA	NA	194	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.150000	0.766169	
mm_10972.1	chr2	25706837	25707037	+	1	NA	NA	NA	58	NM_023326	107771	Mm.330057	NM_023326	ENSMUSG00000049086	Bmyc	2900002K07Rik|AW060705|Mycb	brain expressed myelocytomatosis oncogene	protein-coding	0.105000	0.671642	
mm_170713.1	chr2	144156234	144156434	+	1	NA	NA	NA	32956	NR_136884	433481	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.060000	0.497512	
mm_68777.1	chr7	122101743	122101943	-	1	NA	NA	NA	5	NM_028177	70316	Mm.3014	NM_028177	ENSMUSG00000030869	Ndufab1	2210401F17Rik|2310039H15Rik|2610003B19Rik|8kDa|9130423F15Rik|ACP|CI-SDAP|SDAP	NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex, 1	protein-coding	0.165000	0.761194	
mm_56264.1	chr6	90924997	90925197	-	1	NA	NA	NA	-114974	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.000000	0.402985	
mm_104741.1	chr11	98400364	98400564	-	1	NA	NA	NA	26	NM_001033537	320655	Mm.86519	NM_001033537	ENSMUSG00000038208	Pgap3	CAB2|D430035D22Rik|Perld1	post-GPI attachment to proteins 3	protein-coding	0.075000	0.587065	
mm_29471.1	chr3	115641449	115641649	-	1	NA	NA	NA	73506	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.010000	0.482587	
mm_143126.1	chr17	57212580	57212780	-	1	NA	NA	NA	4548	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.005000	0.517413	
mm_114349.1	chr13	60935534	60935734	+	1	NA	NA	NA	932	NM_001145799	13024	Mm.482089	NM_007796	ENSMUSG00000044258	Ctla2a	Ctla-2a	cytotoxic T lymphocyte-associated protein 2 alpha	protein-coding	0.005000	0.427861	
mm_67360.1	chr7	79838375	79838575	-	1	NA	NA	NA	3877	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.005000	0.601990	
mm_20720.1	chr2	135583202	135583402	-	1	NA	NA	NA	-82	NR_015544	320684	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.005000	0.358209	
mm_70696.1	chr8	15027668	15027868	+	1	NA	NA	NA	16743	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.150000	0.736318	
mm_48850.1	chr5	149619075	149619275	-	1	NA	NA	NA	17140	NM_013559	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.015000	0.467662	
mm_38495.1	chr4	141053153	141053353	-	1	NA	NA	NA	408	NM_172122	230872	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	0.015000	0.562189	
mm_119629.1	chr14	51162145	51162345	+	1	NA	NA	NA	-15	NM_019398	54159	Mm.377125	NM_019398	ENSMUSG00000059606	Rnase2b	Ear5|Raf4|mR5	ribonuclease, RNase A family, 2B (liver, eosinophil-derived neurotoxin)	protein-coding	0.010000	0.557214	
mm_128346.1	chr15	39784729	39784929	-	1	NA	NA	NA	-12216	NR_045788	100503072	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	OTTMUSG00000033244	predicted gene 16291	ncRNA	0.020000	0.502488	
mm_47726.1	chr5	130081266	130081466	-	1	NA	NA	NA	1996	NM_001130476	22021	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0.005000	0.432836	
mm_68654.1	chr7	118537759	118537959	-	1	NA	NA	NA	-4503	NM_009940	12850	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0.010000	0.358209	
mm_137963.1	chr17	33432163	33432363	+	1	NA	NA	NA	-636	NM_183282	69481	Mm.154333	NM_183282	ENSMUSG00000092519	Actl9	1700029I08Rik|AV259599	actin-like 9	protein-coding	0.010000	0.482587	
mm_119794.1	chr14	54195951	54196151	+	1	NA	NA	NA	57878	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.432836	
mm_45431.1	chr5	67099013	67099213	-	1	NA	NA	NA	13	NM_008888	18935	Mm.62505	NM_008888	ENSMUSG00000012520	Phox2b	Dilp1|NBPhox|Pmx2b|Px2b	paired-like homeobox 2b	protein-coding	0.020000	0.477612	
mm_46309.1	chr5	100564632	100564832	-	1	NA	NA	NA	7473	NM_139198	231507	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.010000	0.343284	
mm_14193.1	chr2	127087393	127087593	+	1	NA	NA	NA	16836	NM_026678	109778	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0.005000	0.407960	
mm_62144.1	chr7	97101493	97101693	+	1	NA	NA	NA	19842	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.005000	0.383085	
mm_60230.1	chr7	43634630	43634830	+	1	NA	NA	NA	-9	NM_028236	72431	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0.025000	0.582090	
mm_36185.1	chr4	62220201	62220401	-	1	NA	NA	NA	-11755	NM_001290350	22696	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0.015000	0.368159	
mm_136166.1	chr16	88563046	88563246	-	1	NA	NA	NA	37	NM_018778	54420	Mm.25836	NM_018778	ENSMUSG00000050520	Cldn8	AI648025	claudin 8	protein-coding	0.015000	0.547264	
mm_77314.1	chr8	117692190	117692390	-	1	NA	NA	NA	-9656	NM_008290	15486	Mm.276466	NM_008290	ENSMUSG00000031844	Hsd17b2	AI194836|AI194967|AI255511	hydroxysteroid (17-beta) dehydrogenase 2	protein-coding	0.010000	0.502488	
mm_15962.1	chr2	166016152	166016352	+	1	NA	NA	NA	23615	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.005000	0.407960	
mm_135327.1	chr16	38800141	38800341	-	1	NA	NA	NA	-38	NM_178924	22268	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0.035000	0.616915	6(GGGTAGAAAAGC,-,0.00)
mm_140050.1	chr17	74528328	74528528	+	1	NA	NA	NA	133	NM_007566	12211	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.085000	0.696517	
mm_23959.1	chr3	84952094	84952294	+	1	NA	NA	NA	-17	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.025000	0.552239	
mm_11656.1	chr2	34963778	34963978	+	1	NA	NA	NA	-2106	NM_001326601	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.015000	0.502488	
mm_58043.1	chr6	136827654	136827854	-	1	NA	NA	NA	462	NM_021714	60321	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	0.125000	0.691542	
mm_147737.1	chr18	61106911	61107111	-	1	NA	NA	NA	1439	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.015000	0.482587	
mm_161810.1	chr17	63895902	63896102	+	1	NA	NA	NA	17936	NM_001286415	14158	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.010000	0.457711	
mm_45422.1	chr5	66593425	66593625	-	1	NA	NA	NA	25292	NM_009686	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.010000	0.447761	
mm_132849.1	chr16	46113051	46113251	+	1	NA	NA	NA	7097	NM_032465	84544	Mm.29204	NM_032465	ENSMUSG00000022657	Cd96	1700109I12Rik|Tactile	CD96 antigen	protein-coding	0.000000	0.467662	
mm_164196.1	chr15	78972959	78973159	+	1	NA	NA	NA	-9997	NM_001024716	110253	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.030000	0.572139	
mm_70537.1	chr8	13039204	13039404	+	1	NA	NA	NA	1996	NM_001242368	14058	Mm.262589	NM_007972	ENSMUSG00000031444	F10	Cf10|fX	coagulation factor X	protein-coding	0.015000	0.567164	
mm_5287.1	chr1	20816664	20816864	-	1	NA	NA	NA	3449	NM_008563	17215	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|p1.m	minichromosome maintenance complex component 3	protein-coding	0.035000	0.502488	
mm_169495.1	chr14	75931416	75931616	-	1	NA	NA	NA	-23487	NM_026214	67516	Mm.390712	NM_026214	ENSMUSG00000046523	Kctd4	2210017A09Rik|AU017169	potassium channel tetramerisation domain containing 4	protein-coding	0.035000	0.552239	
mm_36957.1	chr4	109156526	109156726	-	1	NA	NA	NA	-38590	NM_001134791	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.035000	0.512438	
mm_12436.1	chr2	70672383	70672583	+	1	NA	NA	NA	10974	NM_027352	70231	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|ENSMUSG00000075299|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.000000	0.283582	
mm_128903.1	chr15	73363686	73363886	-	1	NA	NA	NA	59405	NM_007982	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.010000	0.398010	
mm_54294.1	chr6	29280933	29281133	-	1	NA	NA	NA	-108	NM_001101486	245884	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	0.010000	0.552239	
mm_74442.1	chr8	3918118	3918318	-	1	NA	NA	NA	8623	NM_001037800	69165	Mm.175163	NM_026972	ENSMUSG00000065987	Cd209b	1810030I22Rik|DC-SIGNR1|OtB7|SIGNR1|mSIGNR1	CD209b antigen	protein-coding	0.005000	0.477612	
mm_131739.1	chr16	22023709	22023909	+	1	NA	NA	NA	14325	NR_027488	75826	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.010000	0.363184	
mm_168422.1	chr11	33161110	33161310	-	1	NA	NA	NA	1996	NM_001252261	18148	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	0.010000	0.383085	-52(CACTTTAAAAGT,-,0.00)
mm_128599.1	chr15	58182879	58183079	-	1	NA	NA	NA	31913	NM_026346	67731	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.020000	0.373134	
mm_43970.1	chr5	145980863	145981063	+	1	NA	NA	NA	28654	NM_019792	56388	Mm.301900	NM_019792	ENSMUSG00000029630	Cyp3a25	AI327008	cytochrome P450, family 3, subfamily a, polypeptide 25	protein-coding	0.005000	0.482587	-11(GGGCTTTAAAGA,-,0.00)
mm_139671.1	chr17	57412199	57412399	+	1	NA	NA	NA	53613	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.368159	
mm_77287.1	chr8	116894670	116894870	-	1	NA	NA	NA	26666	NM_026844	66531	Mm.4011	NM_026844	ENSMUSG00000014633	Cmc2	1110046L09Rik|2310061C15Rik|DC13	COX assembly mitochondrial protein 2	protein-coding	0.015000	0.432836	
mm_167311.1	chr8	61715437	61715637	+	1	NA	NA	NA	44561	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.030000	0.557214	
mm_123751.1	chr14	70192779	70192979	-	1	NA	NA	NA	-633	NM_001271409	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.000000	0.487562	
mm_85837.1	chr9	110532677	110532877	-	1	NA	NA	NA	180	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.140000	0.706468	
mm_104878.1	chr11	99433459	99433659	-	1	NA	NA	NA	4594	NM_023256	66809	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	0.010000	0.343284	38(GTTTTTATAGCC,+,0.00)
mm_79192.1	chr9	48450232	48450432	+	1	NA	NA	NA	-4012	NR_026561	667933	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.080000	0.562189	
mm_153156.1	chr19	34254131	34254331	-	1	NA	NA	NA	1142	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.025000	0.452736	
mm_156075.1	chrX	109161640	109161840	+	1	NA	NA	NA	-35016	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.000000	0.308458	
mm_168898.1	chr12	54694734	54694934	-	1	NA	NA	NA	1060	NM_001331162	66266	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	0.010000	0.373134	
mm_8985.1	chr1	165696645	165696845	-	1	NA	NA	NA	11349	NM_178593	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.005000	0.402985	
mm_99487.1	chr11	102665523	102665723	+	1	NA	NA	NA	38	NM_001127576	268491	Mm.447643	NM_001127576	ENSMUSG00000051455	Meioc	Gm1564|Gm663	meiosis specific with coiled-coil domain	protein-coding	0.140000	0.766169	
mm_53465.1	chr6	134920417	134920617	+	1	NA	NA	NA	116	NM_009875	12576	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	0.090000	0.631841	
mm_81183.1	chr9	107505498	107505698	+	1	NA	NA	NA	-28347	NM_019704	56395	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	0.015000	0.552239	
mm_86901.1	chr10	22306656	22306856	+	1	NA	NA	NA	36	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.010000	0.537313	87(GACTCTAAAGGC,-,0.00)
mm_117740.1	chr13	95685745	95685945	-	1	NA	NA	NA	-11075	NM_010170	14064	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	0.015000	0.532338	
mm_121498.1	chr14	121879626	121879826	+	1	NA	NA	NA	-318	NR_130999	78312	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0.020000	0.432836	
mm_58196.1	chr6	143099745	143099945	-	1	NA	NA	NA	307	NM_001286578	74741	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.150000	0.721393	
mm_45997.1	chr5	90639578	90639778	-	1	NA	NA	NA	849	NM_028478	73246	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.030000	0.532338	
mm_20059.1	chr2	120351926	120352126	-	1	NA	NA	NA	1107	NM_178851	269338	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	0.010000	0.447761	
mm_92668.1	chr10	80433873	80434073	-	1	NA	NA	NA	-320	NM_001164148	21423	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.060000	0.477612	
mm_77392.1	chr8	120228159	120228359	-	1	NA	NA	NA	-29	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.015000	0.601990	
mm_152770.1	chr19	20964305	20964505	-	1	NA	NA	NA	-10203	NM_028953	13409	Mm.219585	NM_028953	ENSMUSG00000024749	Tmc1	4933416G09Rik|Beethoven|Bth|CWEA1|dn	transmembrane channel-like gene family 1	protein-coding	0.010000	0.482587	-33(GGACATATAAGG,-,0.00)
mm_113009.1	chr13	21910826	21911026	+	1	NA	NA	NA	-13877	NR_035500	100316716		NR_035500	ENSMUSG00000088148	Mir1983	mmu-mir-1983	microRNA 1983	ncRNA	0.020000	0.517413	
mm_15973.1	chr2	166153916	166154116	+	1	NA	NA	NA	1269	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.020000	0.626866	
mm_70496.1	chr8	12756948	12757148	+	1	NA	NA	NA	32	NM_001293667	50770	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	0.210000	0.830846	
mm_147397.1	chr18	44380230	44380430	-	1	NA	NA	NA	-170	NM_027490	70640	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0.060000	0.527363	
mm_102108.1	chr11	53257650	53257850	-	1	NA	NA	NA	42729	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.005000	0.532338	
mm_54362.1	chr6	31114934	31115134	-	1	NA	NA	NA	-51941	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.010000	0.393035	
mm_172651.1	chr8	33764599	33764799	-	1	NA	NA	NA	-16929	NM_001206849	72632	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	0.055000	0.512438	-32(GGGTATTTAAGG,-,0.00)
mm_67853.1	chr7	98702762	98702962	-	1	NA	NA	NA	66	NR_144495	100040769	Mm.126401	NR_144495		Gm15506	OTTMUSG00000023003	predicted gene 15506	ncRNA	0.085000	0.587065	
mm_36563.1	chr4	87230323	87230523	-	1	NA	NA	NA	117	NM_172426	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	0.155000	0.766169	
mm_126218.1	chr15	78913822	78914022	+	1	NA	NA	NA	3	NM_020271	57028	Mm.263169	NM_020271	ENSMUSG00000022436	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	0.135000	0.696517	
mm_44640.1	chr5	28123942	28124142	-	1	NA	NA	NA	-41654	NM_010134	13799	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	0.025000	0.522388	
mm_7527.1	chr1	124208299	124208499	-	1	NA	NA	NA	-162840	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.417910	
mm_36622.1	chr4	91371859	91372059	-	1	NA	NA	NA	96	NM_010486	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding	0.130000	0.761194	
mm_113755.1	chr13	44731752	44731952	+	1	NA	NA	NA	581	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.010000	0.383085	
mm_125161.1	chr15	31225076	31225276	+	1	NA	NA	NA	791	NM_146057	223453	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.010000	0.537313	
mm_131829.1	chr16	22951049	22951249	+	1	NA	NA	NA	77	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.005000	0.472637	
mm_62025.1	chr7	91647614	91647814	+	1	NA	NA	NA	-414680	NM_001243046	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.303483	
mm_19848.1	chr2	113748797	113748997	-	1	NA	NA	NA	9751	NM_011824	23892	Mm.166318	NM_011824	ENSMUSG00000074934	Grem1	Cktsf1b1|Drm|Grem|ld	gremlin 1, DAN family BMP antagonist	protein-coding	0.000000	0.313433	-67(GAGTTTAAAAGT,-,0.00)
mm_114879.1	chr13	94176661	94176861	+	1	NA	NA	NA	108520	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.015000	0.398010	
mm_108733.1	chr12	87873973	87874173	+	1	NA	NA	NA	1	NM_001122662	100039042	Mm.423010	NM_001122662	ENSMUSG00000072905	Gm2016	-	predicted gene 2016	protein-coding	0.010000	0.457711	
mm_169839.1	chr16	28951321	28951521	-	1	NA	NA	NA	-21723	NM_177718	239796	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.045000	0.502488	
mm_94450.1	chr11	6389264	6389464	+	1	NA	NA	NA	-5761	NM_001005867	52915	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.165000	0.810945	
mm_55080.1	chr6	49214571	49214771	-	1	NA	NA	NA	283	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.060000	0.537313	
mm_127675.1	chr15	102889768	102889968	+	1	NA	NA	NA	-31263	NM_010464	15422	Mm.207062	NM_010464	ENSMUSG00000001655	Hoxc13	-	homeobox C13	protein-coding	0.010000	0.343284	
mm_37376.1	chr4	120974915	120975115	-	1	NA	NA	NA	-1693	NR_105982	102465614		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.020000	0.512438	
mm_116736.1	chr13	51739701	51739901	-	1	NA	NA	NA	53946	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.000000	0.532338	
mm_155392.1	chrX	72825072	72825272	+	1	NA	NA	NA	-6	NM_001290435	57249	Mm.117125	NM_020488	ENSMUSG00000031344	Gabrq	-	gamma-aminobutyric acid (GABA) A receptor, subunit theta	protein-coding	0.105000	0.701493	
mm_66520.1	chr7	45124244	45124444	-	1	NA	NA	NA	45	NM_013725	27207	Mm.196538	NM_013725	ENSMUSG00000003429	Rps11	-	ribosomal protein S11	protein-coding	0.115000	0.641791	
mm_56883.1	chr6	119030860	119031060	-	1	NA	NA	NA	77535	NM_001159534	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.005000	0.328358	57(ACTTTTATACAC,+,0.00)
mm_95571.1	chr11	52396442	52396642	+	1	NA	NA	NA	114	NM_153117	213673	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.115000	0.726368	
mm_84604.1	chr9	70103030	70103230	-	1	NA	NA	NA	38427	NM_029784	76886	Mm.44355	NM_029784	ENSMUSG00000032224	Fam81a	6430514L14Rik	family with sequence similarity 81, member A	protein-coding	0.010000	0.537313	
mm_60609.1	chr7	44587257	44587457	+	1	NA	NA	NA	-3529	NM_008422	16504	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.055000	0.631841	
mm_50596.1	chr6	49073739	49073939	+	1	NA	NA	NA	44	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.110000	0.656716	
mm_39038.1	chr4	152318512	152318712	-	1	NA	NA	NA	13	NM_001033489	433809	Mm.156205	NM_001033489	ENSMUSG00000058498	Rnf207	D330010C22Rik|Gm143	ring finger protein 207	protein-coding	0.020000	0.582090	
mm_162510.1	chr1	152682981	152683181	+	1	NA	NA	NA	-57864	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.010000	0.532338	
mm_120592.1	chr14	70075095	70075295	+	1	NA	NA	NA	-2250	NM_018781	13655	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.095000	0.731343	
mm_82682.1	chr9	22135678	22135878	-	1	NA	NA	NA	-32	NM_001102405	11433	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.020000	0.552239	
mm_58581.1	chr7	4922478	4922678	+	1	NA	NA	NA	327	NM_201355	269854	Mm.42652	NM_201355	ENSMUSG00000035285	Nat14	BC047219	N-acetyltransferase 14	protein-coding	0.025000	0.562189	
mm_52799.1	chr6	121336296	121336496	+	1	NA	NA	NA	-6680	NM_001347433	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.020000	0.547264	
mm_141863.1	chr17	34804387	34804587	-	1	NA	NA	NA	-61	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.000000	0.522388	45(GGCTATAAAAGG,-,0.00)
mm_58807.1	chr7	16313545	16313745	+	1	NA	NA	NA	4062	NM_133234	170770	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.045000	0.691542	
mm_39748.1	chr5	29569746	29569946	+	1	NA	NA	NA	604	NM_133907	100763	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	0.060000	0.601990	
mm_89994.1	chr10	112083258	112083458	+	1	NA	NA	NA	4	NM_026223	67537	Mm.292351	NM_026223	ENSMUSG00000020214	Glipr1l2	4921508O11Rik	GLI pathogenesis-related 1 like 2	protein-coding	0.055000	0.552239	
mm_20097.1	chr2	121025643	121025843	-	1	NA	NA	NA	11134	NM_013513	13828	Mm.240051	NM_013513	ENSMUSG00000023216	Epb42	Epb4.2	erythrocyte membrane protein band 4.2	protein-coding	0.005000	0.532338	
mm_120718.1	chr14	72851773	72851973	+	1	NA	NA	NA	-141870	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.015000	0.497512	
mm_32798.1	chr4	117068006	117068206	+	1	NA	NA	NA	-27950	NM_001312903	19207	Mm.287037	NM_008958	ENSMUSG00000028681	Ptch2	ptc2	patched 2	protein-coding	0.010000	0.512438	
mm_141878.1	chr17	34856936	34857136	-	1	NA	NA	NA	596	NR_105938	102465587		NR_105938	ENSMUSG00000098445	Mir6972	Gm27810|mmu-mir-6972	microRNA 6972	ncRNA	0.005000	0.542289	
mm_50878.1	chr6	55491137	55491337	+	1	NA	NA	NA	39259	NM_007407	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	0.015000	0.522388	
mm_118850.1	chr14	25674771	25674971	+	1	NA	NA	NA	-19299	NM_134084	105675	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.000000	0.368159	
mm_153843.1	chr19	46332684	46332884	-	1	NA	NA	NA	4600	NM_133694	68431	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	0.010000	0.587065	
mm_24428.1	chr3	90539553	90539753	+	1	NA	NA	NA	-1570	NM_026416	67860	Mm.331185	NM_026416	ENSMUSG00000074457	S100a16	2300002L21Rik|AI325039|AI663996|DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding	0.015000	0.512438	
mm_46789.1	chr5	112766875	112767075	-	1	NA	NA	NA	-26317	NR_040675	67360	Mm.59218	NR_040675	ENSMUSG00000098230	1700095B10Rik	-	RIKEN cDNA 1700095B10 gene	ncRNA	0.000000	0.388060	
mm_95849.1	chr11	57717213	57717413	+	1	NA	NA	NA	71871	NM_134189	171212	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	0.015000	0.402985	
mm_105462.1	chr11	105126220	105126420	-	1	NA	NA	NA	-105	NM_172567	52686	Mm.270091	NM_172567	ENSMUSG00000020691	Mettl2	2810438F06Rik|AW493404|C130031G21Rik|D11Ertd768e|METL|PSENIP1	methyltransferase like 2	protein-coding	0.085000	0.676617	
mm_168924.1	chr12	63047734	63047934	-	1	NA	NA	NA	360047	NR_131949	73309	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0.030000	0.616915	
mm_42449.1	chr5	115434915	115435115	+	1	NA	NA	NA	5330	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.025000	0.582090	
mm_34081.1	chr4	138725196	138725396	+	1	NA	NA	NA	-29	NM_008868	18781	Mm.5189	NM_008868	ENSMUSG00000028750	Pla2g2c	-	phospholipase A2, group IIC	protein-coding	0.055000	0.666667	
mm_18895.1	chr2	76712512	76712712	-	1	NA	NA	NA	37297	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.045000	0.492537	
mm_35625.1	chr4	43454788	43454988	-	1	NA	NA	NA	-262	NM_007654	12517	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.010000	0.577114	
mm_149069.1	chr19	8871436	8871636	+	1	NA	NA	NA	-23	NM_146093	225896	Mm.27839	NM_146093	ENSMUSG00000071655	Ubxn1	2B28|4930455J02Rik|D19Ertd721e|T25529	UBX domain protein 1	protein-coding	0.100000	0.701493	
mm_26556.1	chr3	146451526	146451726	+	1	NA	NA	NA	1159	NM_001293672	74245	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	0.020000	0.532338	
mm_104851.1	chr11	99321109	99321309	-	1	NA	NA	NA	1732	NM_133730	70810	Mm.268173	NM_133730	ENSMUSG00000035831	Krt25	4631426H08Rik|Ka38|Krt25a|mIRSa1	keratin 25	protein-coding	0.060000	0.577114	
mm_112921.1	chr13	20933884	20934084	+	1	NA	NA	NA	139315	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.010000	0.402985	
mm_94802.1	chr11	22990536	22990736	+	1	NA	NA	NA	43	NM_009837	12464	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	0.115000	0.686567	
mm_36638.1	chr4	93335720	93335920	-	1	NA	NA	NA	-309	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.050000	0.547264	
mm_20204.1	chr2	125123533	125123733	-	1	NA	NA	NA	27	NM_001162417	17876	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	0.155000	0.751244	
mm_42529.1	chr5	115631908	115632108	+	1	NA	NA	NA	21	NM_198163	77407	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	0.105000	0.736318	
mm_74233.1	chr8	124318067	124318267	+	1	NA	NA	NA	86773	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0.020000	0.492537	
mm_837.1	chr1	51566486	51566686	+	1	NA	NA	NA	-88187	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.020000	0.502488	
mm_72723.1	chr8	85037121	85037321	+	1	NA	NA	NA	53	NM_001122843	212999	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	0.105000	0.731343	
mm_148086.1	chr18	73701656	73701856	-	1	NA	NA	NA	1985	NM_008540	17128	Mm.100399	NM_008540	ENSMUSG00000024515	Smad4	AW743858|D18Wsu70e|DPC4|Madh4	SMAD family member 4	protein-coding	0.000000	0.288557	23(ATGCATTAAAGG,-,0.00),25(GCATTAAAGGGG,+,0.00)
mm_21541.1	chr2	163750076	163750276	-	1	NA	NA	NA	63	NM_007398	11486	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0.110000	0.696517	
mm_120416.1	chr14	65358484	65358684	+	1	NA	NA	NA	-92	NM_199029	380912	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.150000	0.791045	
mm_99210.1	chr11	101023043	101023243	+	1	NA	NA	NA	-7197	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.005000	0.422886	
mm_37808.1	chr4	130839854	130840054	-	1	NA	NA	NA	47417	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.005000	0.557214	
mm_27646.1	chr3	63899302	63899502	-	1	NA	NA	NA	29983	NM_177856	329659	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding	0.015000	0.547264	
mm_24788.1	chr3	95545249	95545449	+	1	NA	NA	NA	-14328	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.020000	0.557214	
mm_121455.1	chr14	120478585	120478785	+	1	NA	NA	NA	224	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.190000	0.800995	
mm_138459.1	chr17	35140167	35140367	+	1	NA	NA	NA	4553	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.030000	0.547264	
mm_23131.1	chr3	37753337	37753537	+	1	NA	NA	NA	-29077	NM_198657	381438	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.005000	0.412935	
mm_69864.1	chr7	141443237	141443437	-	1	NA	NA	NA	18	NM_022654	57913	Mm.334321	NM_022654	ENSMUSG00000025507	Pidd1	1200011D09Rik|AU042446|Lrdd|Pidd	p53 induced death domain protein 1	protein-coding	0.015000	0.597015	
mm_141249.1	chr17	27547252	27547452	-	1	NA	NA	NA	-9222	NM_001166536	15361	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0.030000	0.651741	
mm_77525.1	chr8	122981879	122982079	-	1	NA	NA	NA	60305	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.000000	0.323383	
mm_68058.1	chr7	101837817	101838017	-	1	NA	NA	NA	-93	NM_001122739	16332	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0.130000	0.701493	
mm_38636.1	chr4	142655977	142656177	-	1	NA	NA	NA	-416676	NM_001109685	71529	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	0.005000	0.402985	
mm_37642.1	chr4	128260820	128261020	-	1	NA	NA	NA	-25	NM_027036	69317	Mm.331893	NM_027036	ENSMUSG00000048686	Hmgb4	1700001F22Rik|AI326135	high-mobility group box 4	protein-coding	0.010000	0.517413	
mm_26910.1	chr3	19695231	19695431	-	1	NA	NA	NA	65	NM_205769	12918	Mm.290689	NM_205769	ENSMUSG00000049796	Crh	CRF|Gm1347	corticotropin releasing hormone	protein-coding	0.030000	0.457711	
mm_145651.1	chr18	61129166	61129366	+	1	NA	NA	NA	11798	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.015000	0.542289	
mm_160957.1	chr11	98350144	98350344	+	1	NA	NA	NA	248	NM_001313970	19049	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0.000000	0.512438	
mm_68652.1	chr7	118533172	118533372	-	1	NA	NA	NA	84	NM_001304758	12850	Mm.20634	NM_009940	ENSMUSG00000030652	Coq7	clk-1	demethyl-Q 7	protein-coding	0.100000	0.646766	
mm_52185.1	chr6	99521313	99521513	+	1	NA	NA	NA	-420	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.125000	0.721393	
mm_132486.1	chr16	36914495	36914695	+	1	NA	NA	NA	-17406	NR_040476	68306	Mm.399193	NR_040476	ENSMUSG00000084834	4930565N06Rik	4930428L02Rik	RIKEN cDNA 4930565N06 gene	ncRNA	0.010000	0.497512	
mm_135999.1	chr16	75383603	75383803	-	1	NA	NA	NA	202358	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.005000	0.328358	
mm_150559.1	chr19	39330290	39330490	+	1	NA	NA	NA	43305	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.000000	0.442786	36(CTCTCTAAAGAG,-,0.00)
mm_124000.1	chr14	75844842	75845042	-	1	NA	NA	NA	22	NR_045294	100043189	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.105000	0.686567	
mm_27485.1	chr3	54634528	54634728	-	1	NA	NA	NA	-58477	NM_019995	56790	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0.030000	0.547264	-34(CTGTATTTAAGG,-,0.00),-32(GTATTTAAGGGC,+,0.00)
mm_116620.1	chr13	48879933	48880133	-	1	NA	NA	NA	-9148	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.020000	0.368159	
mm_64086.1	chr7	140967260	140967460	+	1	NA	NA	NA	-69	NM_026820	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding	0.005000	0.497512	-33(CCACATAAAAGG,-,0.00)
mm_102093.1	chr11	52283248	52283448	-	1	NA	NA	NA	-334	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.155000	0.805970	
mm_105172.1	chr11	101784442	101784642	-	1	NA	NA	NA	768	NM_008815	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.115000	0.771144	
mm_123310.1	chr14	62346899	62347099	-	1	NA	NA	NA	14894	NM_026001	67153	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	0.025000	0.507463	
mm_57012.1	chr6	121173631	121173831	-	1	NA	NA	NA	-9936	NM_001304774	74043	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	0.010000	0.497512	
mm_140918.1	chr17	24170739	24170939	-	1	NA	NA	NA	-1410	NM_009729	11984	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0.015000	0.507463	
mm_56630.1	chr6	112946810	112947010	-	1	NA	NA	NA	356	NM_080448	259302	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	0.060000	0.547264	
mm_78012.1	chr9	13469906	13470106	+	1	NA	NA	NA	38645	NR_028271	18689	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.005000	0.358209	-24(GACTTTTTAAAG,-,0.00),-22(CTTTTTAAAGGT,+,0.00)
mm_134090.1	chr16	8823717	8823917	-	1	NA	NA	NA	-6283	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.005000	0.437811	-34(CTATTTAAAAGG,-,0.00),87(GTCTATAAAAAT,-,0.00)
mm_139664.1	chr17	57408304	57408504	+	1	NA	NA	NA	49718	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.477612	
mm_2908.1	chr1	132007473	132007673	+	1	NA	NA	NA	-32	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.120000	0.701493	
mm_99001.1	chr11	98798559	98798759	+	1	NA	NA	NA	2890	NM_028722	74026	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male-specific lethal 1 homolog (Drosophila)	protein-coding	0.025000	0.477612	-35(CACCTTAAAAGA,-,0.00)
mm_49860.1	chr6	38550690	38550890	+	1	NA	NA	NA	-544	NM_138680	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.040000	0.567164	
mm_165488.1	chr2	164523599	164523799	+	1	NA	NA	NA	26174	NM_133779	78928	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	0.020000	0.507463	
mm_81162.1	chr9	107298264	107298464	+	1	NA	NA	NA	1705	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.010000	0.502488	
mm_31103.1	chr4	41762264	41762464	+	1	NA	NA	NA	54	NM_010549	16157	Mm.193451	NM_010549	ENSMUSG00000073889	Il11ra1	AI314697|GP130|Il-11ra|Il11ra|Il11ra2|NR1	interleukin 11 receptor, alpha chain 1	protein-coding	0.025000	0.611940	
mm_141297.1	chr17	28080057	28080257	-	1	NA	NA	NA	427	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.145000	0.751244	
mm_82874.1	chr9	32429605	32429805	-	1	NA	NA	NA	35720	NM_001168354	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.005000	0.303483	26(GAACTTATAAGG,-,0.00)
mm_163970.1	chr14	55385362	55385562	+	1	NA	NA	NA	-93296	NM_001037938	28200	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	0.020000	0.537313	
mm_48839.1	chr5	149266963	149267163	-	1	NA	NA	NA	2059	NM_009663	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.020000	0.567164	
mm_160861.1	chr11	59727528	59727728	+	1	NA	NA	NA	12526	NR_045476	69320	Mm.443242	NR_045476	ENSMUSG00000086330	1700007J10Rik	4930573L17Rik	RIKEN cDNA 1700007J10 gene	ncRNA	0.005000	0.552239	
mm_33185.1	chr4	126117056	126117256	+	1	NA	NA	NA	13199	NM_001145827	74178	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	0.025000	0.487562	-6(TTTTTTAAACGC,+,0.00)
mm_135317.1	chr16	38713334	38713534	-	1	NA	NA	NA	-399	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.045000	0.557214	
mm_122273.1	chr14	34374554	34374754	-	1	NA	NA	NA	15	NM_011430	20618	Mm.282800	NM_011430	ENSMUSG00000023064	Sncg	C79089|persyn	synuclein, gamma	protein-coding	0.030000	0.606965	
mm_16420.1	chr2	180171856	180172056	+	1	NA	NA	NA	368	NM_019822	56436	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	0.140000	0.721393	
mm_131511.1	chr16	17499596	17499796	+	1	NA	NA	NA	7775	NM_001291070	72168	Mm.40038	NM_175178	ENSMUSG00000022763	Aifm3	2810401C16Rik|AI840249|Aifl	apoptosis-inducing factor, mitochondrion-associated 3	protein-coding	0.030000	0.636816	
mm_71269.1	chr8	40919026	40919226	+	1	NA	NA	NA	-7107	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.015000	0.407960	-2(GTGTTTATAAAC,-,0.00),0(GTTTATAAACAC,+,0.00)
mm_99815.1	chr11	108425173	108425373	+	1	NA	NA	NA	7	NM_029606	76380	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0.095000	0.651741	
mm_160356.1	chr8	21594410	21594610	-	1	NA	NA	NA	-45	NM_001177518	665927	Mm.422762	NM_001177518	ENSMUSG00000079114	Gm7849	EG665927	predicted gene 7849	protein-coding	0.005000	0.542289	-32(CCGTATAAATGC,-,0.00)
mm_25833.1	chr3	129199831	129200031	+	1	NA	NA	NA	53	NM_001042504	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.080000	0.626866	
mm_36135.1	chr4	59349826	59350026	-	1	NA	NA	NA	88707	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.015000	0.507463	
mm_83344.1	chr9	44288468	44288668	-	1	NA	NA	NA	-324	NM_138955	192663	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP-binding cassette, sub-family G (WHITE), member 4	protein-coding	0.025000	0.572139	
mm_31562.1	chr4	57567726	57567926	+	1	NA	NA	NA	-422	NM_001304544	677884	Mm.331630	NM_001304544	ENSMUSG00000089945	Pakap	AF064781|Gm20459|Palm2-Akap2|Palm2Akap2|Palm2akap2	paralemmin A kinase anchor protein	protein-coding	0.065000	0.651741	
mm_49808.1	chr6	36388115	36388315	+	1	NA	NA	NA	19	NR_015589	319472	Mm.226434	NR_015589	ENSMUSG00000073154	9330158H04Rik	-	RIKEN cDNA 9330158H04 gene	ncRNA	0.050000	0.597015	
mm_146429.1	chr18	84851683	84851883	+	1	NA	NA	NA	369	NM_025797	109672	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.040000	0.542289	
mm_62793.1	chr7	112682627	112682827	+	1	NA	NA	NA	3407	NM_009346	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.005000	0.398010	-7(CTTTTTATGGCT,+,0.00)
mm_18849.1	chr2	75658823	75659023	-	1	NA	NA	NA	-336	NM_146130	229279	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.075000	0.577114	
mm_17268.1	chr2	26062236	26062436	-	1	NA	NA	NA	30060	NM_001037098	67991	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.010000	0.547264	
mm_22564.1	chr3	9988169	9988369	+	1	NA	NA	NA	-24316	NM_001272097	16592	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0.015000	0.522388	
mm_61243.1	chr7	65693362	65693562	+	1	NA	NA	NA	45	NM_026795	68634	Mm.476828	NM_026795	ENSMUSG00000078681	Tm2d3	1110025I09Rik|5930422O05Rik|Blp2	TM2 domain containing 3	protein-coding	0.140000	0.741294	
mm_63182.1	chr7	125491447	125491647	+	1	NA	NA	NA	-5	NM_026330	67711	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.110000	0.661692	
mm_118973.1	chr14	27876431	27876631	+	1	NA	NA	NA	254124	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	0.030000	0.552239	
mm_70743.1	chr8	19150658	19150858	+	1	NA	NA	NA	-7129	NM_153115	78128	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	0.010000	0.517413	
mm_36704.1	chr4	96786679	96786879	-	1	NA	NA	NA	-1619	NM_001081284	620779	Mm.439625	NM_001081284	ENSMUSG00000078639	Gm12695	OTTMUSG00000008003	predicted gene 12695	protein-coding	0.030000	0.552239	13(CTTTTTAGACTG,+,0.00)
mm_134911.1	chr16	30267448	30267648	-	1	NA	NA	NA	-16	NM_027904	71756	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.025000	0.557214	
mm_44331.1	chr5	14723590	14723790	-	1	NA	NA	NA	191199	NM_198666	381714	Mm.368256	NM_198666	ENSMUSG00000033219	Gm9758	ENSMUSG00000033219	predicted gene 9758	protein-coding	0.000000	0.437811	
mm_17365.1	chr2	26864855	26865055	-	1	NA	NA	NA	40	NM_030718	80908	Mm.160386	NM_030718	ENSMUSG00000015787	Abo	NAGAT	ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase)	protein-coding	0.010000	0.542289	
mm_12794.1	chr2	79635354	79635554	+	1	NA	NA	NA	29	NM_080558	70599	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0.110000	0.810945	
mm_16922.1	chr2	13580123	13580323	-	1	NA	NA	NA	5912	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.030000	0.467662	
mm_72355.1	chr8	79711759	79711959	+	1	NA	NA	NA	39	NM_026904	68999	Mm.257445	NM_026904	ENSMUSG00000036977	Anapc10	1500026N15Rik|A830003M23Rik|APC10	anaphase promoting complex subunit 10	protein-coding	0.075000	0.601990	
mm_95231.1	chr11	44520239	44520439	+	1	NA	NA	NA	962	NM_001166553	74315	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.015000	0.487562	
mm_19402.1	chr2	91636317	91636517	-	1	NA	NA	NA	40	NM_010168	14061	Mm.89048	NM_010168	ENSMUSG00000027249	F2	Cf-2|Cf2|FII	coagulation factor II	protein-coding	0.025000	0.572139	
mm_143990.1	chr17	87682727	87682927	-	1	NA	NA	NA	10270	NM_008628	17685	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	0.045000	0.522388	
mm_101958.1	chr11	50299089	50299289	-	1	NA	NA	NA	-6853	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.010000	0.427861	
mm_115217.1	chr13	109632564	109632764	+	1	NA	NA	NA	-271145	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.020000	0.587065	
mm_74526.1	chr8	9559095	9559295	-	1	NA	NA	NA	211828	NM_173446	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding	0.000000	0.437811	
mm_149434.1	chr19	11472523	11472723	+	1	NA	NA	NA	3255	NM_028595	73656	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.000000	0.412935	
mm_8762.1	chr1	160792674	160792874	-	1	NA	NA	NA	164	NM_013862	29809	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0.135000	0.746269	
mm_116110.1	chr13	28949970	28950170	-	1	NA	NA	NA	3612	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.020000	0.288557	
mm_81725.1	chr9	112256217	112256417	+	1	NA	NA	NA	-257	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA	0.005000	0.432836	
mm_146222.1	chr18	77065123	77065323	+	1	NA	NA	NA	15	NM_001164167	17344	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0.185000	0.815920	
mm_78586.1	chr9	37367266	37367466	+	1	NA	NA	NA	-240	NM_175189	72927	Mm.266133	NM_175189	ENSMUSG00000046240	Hepacam	2900042E01Rik|Glialcam|Hepn1	hepatocyte cell adhesion molecule	protein-coding	0.005000	0.457711	
mm_45814.1	chr5	87674949	87675149	-	1	NA	NA	NA	8841	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.253731	
mm_80556.1	chr9	83409520	83409720	+	1	NA	NA	NA	-21927	NR_102437	100039186	Mm.212721	NR_102437	ENSMUSG00000099718	Gm2087	-	predicted gene 2087	ncRNA	0.050000	0.477612	
mm_64447.1	chr7	142658459	142658659	+	1	NA	NA	NA	245	NM_010514	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.055000	0.577114	
mm_68924.1	chr7	126472289	126472489	-	1	NA	NA	NA	705	NR_110346	20399	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	0.030000	0.587065	
mm_2035.1	chr1	87213857	87214057	+	1	NA	NA	NA	18	NM_001039169	26987	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0.105000	0.681592	
mm_69935.1	chr7	142094994	142095194	-	1	NA	NA	NA	190	NM_008748	18218	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	0.220000	0.835821	
mm_161961.1	chr19	7802510	7802710	-	1	NA	NA	NA	57	NM_146232	236149	Mm.207060	NM_146232	ENSMUSG00000053303	Slc22a26	-	solute carrier family 22 (organic cation transporter), member 26	protein-coding	0.000000	0.343284	
mm_69178.1	chr7	127218634	127218834	-	1	NA	NA	NA	-289	NM_017461	54204	Mm.18	NM_017461	ENSMUSG00000000486	Sept1	Diff6|Pnutl3	septin 1	protein-coding	0.010000	0.522388	-33(CTGTATATAAGG,-,0.00)
mm_39623.1	chr5	24423836	24424036	+	1	NA	NA	NA	-406	NM_007668	12568	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding	0.045000	0.567164	
mm_160946.1	chr11	96318059	96318259	+	1	NA	NA	NA	-108	NM_010459	15412	Mm.3546	NM_010459	ENSMUSG00000038692	Hoxb4	Hox-2.6	homeobox B4	protein-coding	0.045000	0.597015	
mm_115106.1	chr13	103344781	103344981	+	1	NA	NA	NA	-10389	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.025000	0.432836	-16(CTCCTTTAAAAG,-,0.00),-15(TCCTTTAAAAGA,-,0.00),-14(CCTTTAAAAGAC,+,0.00)
mm_6563.1	chr1	75142239	75142439	-	1	NA	NA	NA	29	NM_026977	69171	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0.045000	0.497512	
mm_130579.1	chr15	99527610	99527810	-	1	NA	NA	NA	455	NM_028224	72393	Mm.39760	NM_028224	ENSMUSG00000023011	Faim2	2900002L20Rik|Lfg|Lfg2|NMP25|Nmp35|Tmbim2	Fas apoptotic inhibitory molecule 2	protein-coding	0.070000	0.671642	
mm_26988.1	chr3	25700139	25700339	-	1	NA	NA	NA	453068	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.010000	0.338308	-43(GCTTTTCAAGCC,+,0.00)
mm_130411.1	chr15	97977740	97977940	-	1	NA	NA	NA	13611	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.060000	0.597015	
mm_130230.1	chr15	96460627	96460827	-	1	NA	NA	NA	116	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.155000	0.781095	
mm_139547.1	chr17	56764725	56764925	+	1	NA	NA	NA	74	NM_144858	224907	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	0.105000	0.651741	
mm_76169.1	chr8	82391829	82392029	-	1	NA	NA	NA	10657	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.000000	0.393035	
mm_88282.1	chr10	75130891	75131091	+	1	NA	NA	NA	70095	NM_001081412	110279	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.015000	0.557214	
mm_92338.1	chr10	75822435	75822635	-	1	NA	NA	NA	8	NM_029472	75886	Mm.268996	NM_029472	ENSMUSG00000009093	Gstt4	4930583C14Rik|AI507011	glutathione S-transferase, theta 4	protein-coding	0.010000	0.582090	
mm_119306.1	chr14	34819748	34819948	+	1	NA	NA	NA	-288	NM_008166	14803	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	0.130000	0.805970	
mm_96206.1	chr11	62248920	62249120	+	1	NA	NA	NA	36	NM_007413	11541	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0.100000	0.736318	
mm_34547.1	chr4	149553091	149553291	+	1	NA	NA	NA	8074	NM_001141930	67087	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0.015000	0.452736	
mm_63562.1	chr7	128112879	128113079	+	1	NA	NA	NA	-16589	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.020000	0.512438	
mm_69066.1	chr7	126922807	126923007	-	1	NA	NA	NA	-5972	NM_172747	233877	Mm.245897	NM_172747	ENSMUSG00000030685	Kctd13	1500003N18Rik|AV259508|PDIP1alpha|Pdip1|Poldip1	potassium channel tetramerisation domain containing 13	protein-coding	0.015000	0.512438	
mm_150675.1	chr19	42052167	42052367	+	1	NA	NA	NA	39	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	0.010000	0.606965	
mm_116969.1	chr13	56178545	56178745	-	1	NA	NA	NA	240	NM_145976	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.045000	0.552239	
mm_73812.1	chr8	117379267	117379467	+	1	NA	NA	NA	30197	NM_028941	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.030000	0.631841	
mm_69180.1	chr7	127232543	127232743	-	1	NA	NA	NA	487	NR_030674	100043580	Mm.482209	NR_030674	ENSMUSG00000000486	Gm4532	-	predicted gene 4532	ncRNA	0.025000	0.507463	67(TCCTTTATAGAG,+,0.00),69(CTTTATAGAGGT,+,0.00)
mm_90063.1	chr10	116301323	116301523	+	1	NA	NA	NA	49	NM_029928	19263	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0.115000	0.701493	
mm_149773.1	chr19	23087829	23088029	+	1	NA	NA	NA	-53297	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.005000	0.497512	
mm_144072.1	chr17	91057271	91057471	-	1	NA	NA	NA	32234	NM_001346957	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.000000	0.417910	-77(GGGTATTAAAGC,-,0.00)
mm_163909.1	chr14	31267816	31268016	+	1	NA	NA	NA	16427	NM_027088	104416	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	0.015000	0.547264	
mm_63297.1	chr7	126812577	126812777	+	1	NA	NA	NA	-4208	NM_026884	68952	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0.000000	0.492537	
mm_39238.1	chr5	3236284	3236484	+	1	NA	NA	NA	-107509	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.040000	0.417910	
mm_147876.1	chr18	64515946	64516146	-	1	NA	NA	NA	511	NM_027350	70223	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0.035000	0.417910	
mm_122254.1	chr14	34117671	34117871	-	1	NA	NA	NA	-15017	NM_001251843	105518	Mm.246608	NM_001251843	ENSMUSG00000095493	A630023A22Rik	AI461879	RIKEN cDNA A630023A22 gene	protein-coding	0.010000	0.472637	
mm_49718.1	chr6	34598231	34598431	+	1	NA	NA	NA	-173	NM_001347100	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.020000	0.502488	
mm_11195.1	chr2	29124036	29124236	+	1	NA	NA	NA	-856	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.035000	0.527363	-54(TGCCTTATAAAC,-,0.00),-52(CCTTATAAACCA,+,0.00),71(CCTCTAAGAGCC,+,0.00)
mm_26108.1	chr3	137341118	137341318	+	1	NA	NA	NA	140	NM_016885	59308	Mm.27343	NM_016885	ENSMUSG00000054690	Emcn	0610012K22Rik|AI315669|Muc14	endomucin	protein-coding	0.035000	0.552239	
mm_163394.1	chr12	66420897	66421097	+	1	NA	NA	NA	-136596	NM_001162933	238217	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding	0.000000	0.318408	63(TTCTATATAAGA,-,0.00)
mm_122123.1	chr14	31128804	31129004	-	1	NA	NA	NA	26	NM_001308466	66487	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0.080000	0.626866	
mm_64297.1	chr7	141861456	141861656	+	1	NA	NA	NA	22484	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.020000	0.477612	
mm_90890.1	chr10	10234812	10235012	-	1	NA	NA	NA	237402	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.045000	0.482587	
mm_116520.1	chr13	45777473	45777673	-	1	NA	NA	NA	187418	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.000000	0.442786	
mm_154108.1	chr19	57118838	57119038	-	1	NA	NA	NA	86	NM_001347459	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.025000	0.597015	
mm_83503.1	chr9	45955138	45955338	-	1	NA	NA	NA	11	NM_172257	214597	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	0.135000	0.706468	-80(CCCTTTAAATCC,+,0.00),24(CGCCCTTAAAGG,-,0.00),25(GCCCTTAAAGGG,-,0.00),26(CCCTTAAAGGGC,+,0.00),27(CCTTAAAGGGCC,+,0.00)
mm_112642.1	chr13	16016595	16016795	+	1	NA	NA	NA	4844	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.567164	
mm_19634.1	chr2	102814036	102814236	-	1	NA	NA	NA	87529	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.030000	0.502488	
mm_84908.1	chr9	79977531	79977731	-	1	NA	NA	NA	251	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.020000	0.502488	
mm_57390.1	chr6	124839947	124840147	-	1	NA	NA	NA	228	NM_013530	14695	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0.025000	0.656716	
mm_3212.1	chr1	135838317	135838517	+	1	NA	NA	NA	2083	NM_001130179	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.030000	0.577114	
mm_170456.1	chr18	88658666	88658866	-	1	NA	NA	NA	235441	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.020000	0.437811	
mm_78342.1	chr9	25297714	25297914	+	1	NA	NA	NA	45375	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.005000	0.323383	
mm_90546.1	chr10	128092661	128092861	+	1	NA	NA	NA	-22	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.140000	0.815920	-28(GCCCCTTTAAGC,-,0.00),-26(CCCTTTAAGCGC,+,0.00)
mm_100904.1	chr11	6200329	6200529	-	1	NA	NA	NA	22	NM_173748	209586	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	0.050000	0.527363	
mm_82627.1	chr9	21918035	21918235	-	1	NA	NA	NA	48	NM_031874	19340	Mm.260157	NM_031874	ENSMUSG00000019066	Rab3d	C130057E11Rik	RAB3D, member RAS oncogene family	protein-coding	0.105000	0.726368	
mm_112264.1	chr12	114048659	114048859	-	1	NA	NA	NA	420707	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.005000	0.447761	89(CTCTTTTAAAAG,-,0.00)
mm_167888.1	chrX	60892443	60892643	-	1	NA	NA	NA	887	NM_009237	20675	Mm.35784	NM_009237	ENSMUSG00000045179	Sox3	Sox-3	SRY (sex determining region Y)-box 3	protein-coding	0.125000	0.706468	
mm_70259.1	chr8	3516771	3516971	+	1	NA	NA	NA	1487	NM_015801	50767	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0.070000	0.587065	
mm_141599.1	chr17	32523974	32524174	-	1	NA	NA	NA	-12555	NM_024442	70101	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0.025000	0.547264	
mm_69656.1	chr7	139974254	139974454	-	1	NA	NA	NA	4401	NM_001347614	381933	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0.010000	0.487562	-33(TGCCATTTAAGG,-,0.00),-31(CCATTTAAGGAT,+,0.00)
mm_21683.1	chr2	164431125	164431325	-	1	NA	NA	NA	11963	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.045000	0.611940	
mm_8318.1	chr1	144609010	144609210	-	1	NA	NA	NA	-41443	NR_110891	624910	Mm.389199	NM_001290269	ENSMUSG00000098509	Rgs21	EG624910	regulator of G-protein signalling 21	protein-coding	0.015000	0.363184	
mm_135253.1	chr16	37654300	37654500	-	1	NA	NA	NA	-32	NM_026610	68194	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.080000	0.661692	
mm_76917.1	chr8	105932953	105933153	-	1	NA	NA	NA	809	NM_023182	109660	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.025000	0.542289	
mm_22832.1	chr3	27316972	27317172	+	1	NA	NA	NA	-5	NM_009425	22035	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.015000	0.527363	
mm_104513.1	chr11	96005867	96006067	-	1	NA	NA	NA	-23	NM_009951	140486	Mm.294769	NM_009951	ENSMUSG00000013415	Igf2bp1	AL024068|AW549074|CRD-BP|Crdbp|D030026A21Rik|D11Moh40e|D11Moh45|IMP-1|IMP1|Neilsen|ZBP-1|Zbp1|mir-3063	insulin-like growth factor 2 mRNA binding protein 1	protein-coding	0.095000	0.577114	
mm_107059.1	chr12	16653840	16654040	+	1	NA	NA	NA	470	NM_008747	18217	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT2R|NTRL	neurotensin receptor 2	protein-coding	0.105000	0.706468	
mm_115218.1	chr13	109632613	109632813	+	1	NA	NA	NA	-271096	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.010000	0.577114	
mm_68471.1	chr7	110769233	110769433	-	1	NA	NA	NA	1127	NM_001276301	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.010000	0.537313	-45(TGCTCTTAAAGC,-,0.00),-44(GCTCTTAAAGCA,+,0.00)
mm_165364.1	chr2	126499922	126500122	+	1	NA	NA	NA	-8469	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	0.010000	0.552239	
mm_44512.1	chr5	24329477	24329677	-	1	NA	NA	NA	14	NM_001294162	16511	Mm.6539	NM_013569	ENSMUSG00000038319	Kcnh2	AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding	0.045000	0.731343	
mm_71393.1	chr8	46162182	46162382	+	1	NA	NA	NA	-7274	NM_025747	66756	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430|mKIAA1430	cilia and flagella associated protein 97	protein-coding	0.005000	0.482587	
mm_115845.1	chr13	21287304	21287504	-	1	NA	NA	NA	5282	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.020000	0.517413	69(CCCCCTTAAAGA,-,0.00),70(CCCCTTAAAGAC,+,0.00),72(CCTTAAAGACTG,+,0.00)
mm_34770.1	chr4	153955863	153956063	+	1	NA	NA	NA	-1274	NM_175287	97159	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding	0.010000	0.522388	
mm_6196.1	chr1	65178950	65179150	-	1	NA	NA	NA	92	NM_010497	15926	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.070000	0.651741	
mm_54632.1	chr6	38695355	38695555	-	1	NA	NA	NA	32386	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.010000	0.562189	
mm_77379.1	chr8	119840440	119840640	-	1	NA	NA	NA	39	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.115000	0.696517	
mm_12256.1	chr2	68913573	68913773	+	1	NA	NA	NA	52232	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.010000	0.422886	
mm_123683.1	chr14	69523003	69523203	-	1	NA	NA	NA	-10554	NM_173420	239167	Mm.259889	NM_173420	ENSMUSG00000047977	Synb	D930020E02Rik|syncytin-B	syncytin b	protein-coding	0.000000	0.472637	
mm_135859.1	chr16	59639058	59639258	-	1	NA	NA	NA	181	NM_019665	56297	Mm.392505	NM_019665	ENSMUSG00000022722	Arl6	1110018H24Rik|2210411E14Rik|BBS3	ADP-ribosylation factor-like 6	protein-coding	0.080000	0.651741	
mm_145856.1	chr18	65454739	65454939	+	1	NA	NA	NA	23842	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.005000	0.398010	
mm_42510.1	chr5	115542822	115543022	+	1	NA	NA	NA	-16545	NM_007475	11837	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.025000	0.587065	
mm_13083.1	chr2	91206700	91206900	+	1	NA	NA	NA	3888	NM_007387	11432	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.040000	0.592040	
mm_113524.1	chr13	37825931	37826131	+	1	NA	NA	NA	-7	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.100000	0.686567	
mm_164209.1	chr15	82283045	82283245	+	1	NA	NA	NA	8210	NM_011889	24050	Mm.309707	NM_011889	ENSMUSG00000022456	Sept3	3110018K01Rik|AV154067|B530002E20Rik|Sep3	septin 3	protein-coding	0.015000	0.542289	
mm_43817.1	chr5	142929118	142929318	+	1	NA	NA	NA	-22464	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.115000	0.691542	-33(GTCCATAAAAGG,-,0.00)
mm_66912.1	chr7	60003880	60004080	-	1	NA	NA	NA	1176	NM_013670	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding	0.015000	0.532338	
mm_12749.1	chr2	79231198	79231398	+	1	NA	NA	NA	-24128	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.000000	0.422886	
mm_127089.1	chr15	97782101	97782301	+	1	NA	NA	NA	-2164	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.035000	0.517413	
mm_91030.1	chr10	18023074	18023274	-	1	NA	NA	NA	78	NM_028440	73112	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	0.040000	0.601990	
mm_109353.1	chr12	109609598	109609798	+	1	NA	NA	NA	-1802	NR_029770	723846		NR_029770	ENSMUSG00000070101	Mir341	Mirn341|mmu-mir-341	microRNA 341	ncRNA	0.000000	0.517413	-70(CCATTAATAGGC,+,0.00)
mm_110335.1	chr12	35676521	35676721	-	1	NA	NA	NA	9683	NR_045051	71581	Mm.100110	NR_045050		9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	0.000000	0.343284	-85(GAGTTTAAAAGT,-,0.00)
mm_82520.1	chr9	20642424	20642624	-	1	NA	NA	NA	282	NM_013911	30843	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding	0.050000	0.611940	
mm_23479.1	chr3	60487347	60487547	+	1	NA	NA	NA	-13732	NM_001253711	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.000000	0.393035	
mm_102898.1	chr11	69423841	69424041	-	1	NA	NA	NA	-10266	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.020000	0.452736	
mm_117899.1	chr13	99425741	99425941	-	1	NA	NA	NA	-13015	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.030000	0.507463	
mm_52469.1	chr6	114247952	114248152	+	1	NA	NA	NA	-34583	NM_178703	232333	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.015000	0.522388	
mm_49949.1	chr6	40325386	40325586	+	1	NA	NA	NA	8	NM_023538	69923	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding	0.095000	0.671642	
mm_18449.1	chr2	60948176	60948376	-	1	NA	NA	NA	14928	NM_020296	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.000000	0.517413	14(GGCTAGATAAGA,-,0.00)
mm_66778.1	chr7	46919793	46919993	-	1	NA	NA	NA	37	NM_021884	22088	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	0.120000	0.731343	
mm_51100.1	chr6	67271842	67272042	+	1	NA	NA	NA	4963	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.065000	0.457711	
mm_74784.1	chr8	22059938	22060138	-	1	NA	NA	NA	36	NM_007511	11979	Mm.87854	NM_007511	ENSMUSG00000006567	Atp7b	Atp7a|WND|tx	ATPase, Cu++ transporting, beta polypeptide	protein-coding	0.055000	0.597015	
mm_36864.1	chr4	107057411	107057611	-	1	NA	NA	NA	9355	NM_025500	56280	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0.035000	0.517413	
mm_87752.1	chr10	60277587	60277787	+	1	NA	NA	NA	59	NM_001146121	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.115000	0.671642	
mm_107884.1	chr12	70233781	70233981	+	1	NA	NA	NA	6040	NR_045174	414124	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	0.005000	0.517413	
mm_126785.1	chr15	86214343	86214543	+	1	NA	NA	NA	-16	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.110000	0.661692	
mm_95234.1	chr11	44575116	44575316	+	1	NA	NA	NA	-11101	NR_126460	75389	Mm.261421	NR_126460	ENSMUSG00000086501	4930597A21Rik	-	RIKEN cDNA 4930597A21 gene	ncRNA	0.005000	0.467662	
mm_118297.1	chr13	113079052	113079252	-	1	NA	NA	NA	21829	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.025000	0.477612	
mm_56504.1	chr6	99339001	99339201	-	1	NA	NA	NA	-72586	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.010000	0.353234	
mm_139271.1	chr17	48089573	48089773	+	1	NA	NA	NA	41	NM_026625	68224	Mm.138490	NM_026625	ENSMUSG00000021545	1700067P10Rik	-	RIKEN cDNA 1700067P10 gene	protein-coding	0.005000	0.532338	
mm_165234.1	chr2	58830567	58830767	+	1	NA	NA	NA	75483	NM_029692	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.010000	0.537313	
mm_162384.1	chr1	74249027	74249227	+	1	NA	NA	NA	12577	NM_029711	76709	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.005000	0.388060	
mm_112199.1	chr12	113425911	113426111	-	1	NA	NA	NA	-63554	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.015000	0.462687	
mm_17920.1	chr2	35442006	35442206	-	1	NA	NA	NA	19343	NM_001308299	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.015000	0.517413	
mm_825.1	chr1	50927402	50927602	+	1	NA	NA	NA	-21	NM_019790	56363	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	0.105000	0.716418	
mm_70669.1	chr8	14888951	14889151	+	1	NA	NA	NA	515	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.050000	0.616915	
mm_34112.1	chr4	139194010	139194210	+	1	NA	NA	NA	-1	NM_001271405	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.030000	0.592040	
mm_72886.1	chr8	89053127	89053327	+	1	NA	NA	NA	-9065	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.025000	0.477612	
mm_26403.1	chr3	142605088	142605288	+	1	NA	NA	NA	10341	NM_010259	14468	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.000000	0.378109	
mm_165061.1	chr19	42177095	42177295	+	1	NA	NA	NA	6628	NM_001164531	319740	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	0.020000	0.492537	
mm_66636.1	chr7	45526124	45526324	-	1	NA	NA	NA	44	NM_008654	17872	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	0.090000	0.592040	-32(GGGTATAAAAGC,-,0.00)
mm_42137.1	chr5	111289109	111289309	+	1	NA	NA	NA	-41488	NM_001301644	56305	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0.005000	0.497512	
mm_92114.1	chr10	63203810	63204010	-	1	NA	NA	NA	42	NM_182992	68802	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	0.040000	0.512438	
mm_85856.1	chr9	110742484	110742684	-	1	NA	NA	NA	26	NM_001083936	19228	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.110000	0.721393	
mm_30106.1	chr3	138526885	138527085	-	1	NA	NA	NA	-283	NM_001313980	13684	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.070000	0.572139	
mm_126452.1	chr15	80820328	80820528	+	1	NA	NA	NA	21818	NM_177124	213988	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.005000	0.512438	
mm_38937.1	chr4	150196049	150196249	-	1	NA	NA	NA	4986	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.030000	0.462687	
mm_109458.1	chr12	111166273	111166473	+	1	NA	NA	NA	3	NM_011632	22031	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.175000	0.820896	
mm_121831.1	chr14	20496633	20496833	-	1	NA	NA	NA	168	NM_029104	74843	Mm.295241	NM_029104	ENSMUSG00000021815	Mss51	4833444M15Rik|Zmynd17	MSS51 mitochondrial translational activator	protein-coding	0.010000	0.477612	
mm_157147.1	chrX	9461715	9461915	-	1	NA	NA	NA	7509	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.407960	
mm_162208.1	chrX	135993778	135993978	+	1	NA	NA	NA	58	NM_029823	76976	Mm.328305	NM_029823	ENSMUSG00000048040	Arxes2	2900062L11Rik|Spc22/23|Spcs3	adipocyte-related X-chromosome expressed sequence 2	protein-coding	0.125000	0.726368	
mm_81765.1	chr9	114401047	114401247	+	1	NA	NA	NA	52	NM_001200002	100504715	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	0.080000	0.701493	
mm_172955.1	chr9	88481960	88482160	-	1	NA	NA	NA	337	NM_019666	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.115000	0.706468	
mm_117548.1	chr13	83987752	83987952	-	1	NA	NA	NA	76922	NR_131220	553095	Mm.39702	NR_131220	ENSMUSG00000098087	Gm17750	-	predicted gene, 17750	ncRNA	0.030000	0.497512	
mm_129859.1	chr15	83313416	83313616	-	1	NA	NA	NA	36731	NM_025445	66251	Mm.258910	NM_025445	ENSMUSG00000054277	Arfgap3	0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1	ADP-ribosylation factor GTPase activating protein 3	protein-coding	0.030000	0.592040	
mm_94271.1	chr11	3649147	3649347	+	1	NA	NA	NA	-247	NM_001159288	74522	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	0.120000	0.676617	
mm_110790.1	chr12	72084629	72084829	-	1	NA	NA	NA	584	NM_026038	67217	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	0.075000	0.646766	
mm_64931.1	chr7	16285922	16286122	-	1	NA	NA	NA	773	NM_001136471	243846	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0.020000	0.577114	
mm_122734.1	chr14	52417207	52417407	-	1	NA	NA	NA	-6380	NM_146431	258423	Mm.377492	NM_146431	ENSMUSG00000063106	Olfr1510	MOR223-6	olfactory receptor 1510	protein-coding	0.000000	0.407960	
mm_8445.1	chr1	152871108	152871308	-	1	NA	NA	NA	6960	NM_001160257	226517	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.010000	0.457711	
mm_4181.1	chr1	171159453	171159653	+	1	NA	NA	NA	4035	NM_001315500	17528	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0.045000	0.621891	
mm_134486.1	chr16	18626598	18626798	-	1	NA	NA	NA	3240	NM_213614	18951	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.145000	0.741294	
mm_129321.1	chr15	77766745	77766945	-	1	NA	NA	NA	-11616	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.045000	0.592040	
mm_16138.1	chr2	170527510	170527710	+	1	NA	NA	NA	-15683	NR_040367	100502946	Mm.421284	NR_040367	ENSMUSG00000085495	Gm16796	-	predicted gene, 16796	ncRNA	0.025000	0.482587	-31(CTTTATATAAAC,+,0.00)
mm_921.1	chr1	55131143	55131343	+	1	NA	NA	NA	-2	NM_001310585	19070	Mm.291037	NM_025283	ENSMUSG00000025979	Mob4	2610109B12Rik|Mobkl3|Phocn|Prei3	MOB family member 4, phocein	protein-coding	0.120000	0.761194	
mm_155909.1	chrX	101794535	101794735	+	1	NA	NA	NA	-54750	NM_001163610	100042480	Mm.232	NM_001163610	ENSMUSG00000079481	Nhsl2	1110062M06Rik|6430511F03|AI225852|AW488865|EG621083|ENSMUSG00000073037|Gm10456	NHS-like 2	protein-coding	0.060000	0.597015	
mm_97661.1	chr11	79591072	79591272	+	1	NA	NA	NA	-40	NM_175543	268451	Mm.130656	NM_175543	ENSMUSG00000017639	Rab11fip4	A730072L08Rik|RAB11-FIP4|mKIAA1821	RAB11 family interacting protein 4 (class II)	protein-coding	0.175000	0.815920	
mm_69938.1	chr7	142095186	142095386	-	1	NA	NA	NA	-2	NM_008748	18218	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	0.130000	0.756219	
mm_37313.1	chr4	119320406	119320606	-	1	NA	NA	NA	17	NM_001110129	66101	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	0.100000	0.621891	
mm_47663.1	chr5	125849801	125850001	-	1	NA	NA	NA	317483	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0.025000	0.537313	
mm_172301.1	chr7	104287915	104288115	-	1	NA	NA	NA	91	NM_001310602	667823	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	0.020000	0.477612	
mm_163430.1	chr12	84084954	84085154	+	1	NA	NA	NA	-15600	NM_172580	217700	Mm.49245	NM_172580	ENSMUSG00000043487	Acot6	4632408A20Rik|A330054B07|BE688602	acyl-CoA thioesterase 6	protein-coding	0.005000	0.373134	-34(GTTTATAAAAGC,-,0.00)
mm_18591.1	chr2	66674753	66674953	-	1	NA	NA	NA	-39891	NM_001290675	20274	Mm.440889	NM_018852	ENSMUSG00000075316	Scn9a	Nav1.7|PN1|mKIAA4197	sodium channel, voltage-gated, type IX, alpha	protein-coding	0.000000	0.363184	
mm_171220.1	chr3	59767157	59767357	+	1	NA	NA	NA	37471	NM_001101531	433597	Mm.297801	NM_001101531	ENSMUSG00000090527	Gm5538	-	predicted gene 5538	protein-coding	0.045000	0.512438	
mm_143915.1	chr17	85614953	85615153	-	1	NA	NA	NA	3343	NR_038084	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.080000	0.651741	
mm_8100.1	chr1	135848751	135848951	-	1	NA	NA	NA	7990	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.050000	0.577114	
mm_131101.1	chr16	5007188	5007388	+	1	NA	NA	NA	0	NM_001253803	432995	Mm.271618	NM_001253796	ENSMUSG00000096215	Smim22	EG432995|Gm5480	small integral membrane protein 22	protein-coding	0.020000	0.636816	
mm_100282.1	chr11	117797637	117797837	+	1	NA	NA	NA	77	NM_029964	77727	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	-	RIKEN cDNA 6030468B19 gene	protein-coding	0.020000	0.601990	
mm_17472.1	chr2	28559758	28559958	-	1	NA	NA	NA	3545	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.010000	0.577114	
mm_151184.1	chr19	53390806	53391006	+	1	NA	NA	NA	-333	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	0.075000	0.636816	
mm_108337.1	chr12	80168210	80168410	+	1	NA	NA	NA	-35466	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.070000	0.671642	
mm_91107.1	chr10	19122248	19122448	-	1	NA	NA	NA	-19401	NR_038021	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.020000	0.482587	
mm_45403.1	chr5	66172955	66173155	-	1	NA	NA	NA	18280	NR_040695	73639	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA	0.005000	0.497512	15(CCTTTAAGAGAT,+,0.00)
mm_81542.1	chr9	110245356	110245556	+	1	NA	NA	NA	1673	NM_001166273	29873	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding	0.175000	0.815920	
mm_66681.1	chr7	45814162	45814362	-	1	NA	NA	NA	54	NM_011181	19158	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0.110000	0.721393	
mm_162590.1	chr1	181150911	181151111	+	1	NA	NA	NA	80	NM_030131	98417	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	0.120000	0.661692	
mm_20240.1	chr2	126460539	126460739	-	1	NA	NA	NA	30914	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	0.015000	0.383085	
mm_87330.1	chr10	42901560	42901760	+	1	NA	NA	NA	41148	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.015000	0.502488	
mm_73665.1	chr8	111043204	111043404	+	1	NA	NA	NA	9462	NM_146217	234734	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	0.045000	0.497512	
mm_148862.1	chr19	6401595	6401795	+	1	NA	NA	NA	1112	NM_011242	19395	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.070000	0.686567	
mm_165231.1	chr2	58238900	58239100	+	1	NA	NA	NA	-37779	NR_040365	100502932	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	OTTMUSG00000012672	predicted gene 13544	ncRNA	0.065000	0.537313	
mm_96864.1	chr11	70130302	70130502	+	1	NA	NA	NA	45	NM_145137	216864	Mm.222465	NM_145137	ENSMUSG00000040950	Mgl2	CD301b	macrophage galactose N-acetyl-galactosamine specific lectin 2	protein-coding	0.030000	0.572139	
mm_21667.1	chr2	164425354	164425554	-	1	NA	NA	NA	17734	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.020000	0.432836	51(GTTTTTAAATGG,-,0.00)
mm_115859.1	chr13	21401760	21401960	-	1	NA	NA	NA	895	NM_001145778	72739	Mm.296071	NM_023685	ENSMUSG00000021327	Zkscan3	2810435N07Rik|AA408594|AI132359|Skz1|Zf47|Zfp-47|Zfp306|Zfp307|mszf35	zinc finger with KRAB and SCAN domains 3	protein-coding	0.020000	0.452736	
mm_154617.1	chrX	7697076	7697276	+	1	NA	NA	NA	42	NM_173747	209416	Mm.148753	NM_173747	ENSMUSG00000031148	Gpkow	4432411B18|DXErtd697e|DXImx41e|T54	G patch domain and KOW motifs	protein-coding	0.090000	0.606965	
mm_70718.1	chr8	15326692	15326892	+	1	NA	NA	NA	269139	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.025000	0.582090	
mm_96891.1	chr11	70437156	70437356	+	1	NA	NA	NA	-999	NR_106064	102465670		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.010000	0.507463	
mm_129899.1	chr15	83724912	83725112	-	1	NA	NA	NA	27	NM_001271472	64706	Mm.40393	NM_022723	ENSMUSG00000016763	Scube1	7330410C13Rik|A630023E24Rik	signal peptide, CUB domain, EGF-like 1	protein-coding	0.160000	0.776119	
mm_169820.1	chr16	21694516	21694716	-	1	NA	NA	NA	49	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.080000	0.716418	
mm_85397.1	chr9	103347622	103347822	-	1	NA	NA	NA	17257	NM_001134427	321022	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.020000	0.432836	
mm_113733.1	chr13	44196960	44197160	+	1	NA	NA	NA	19427	NR_045088	100503592	Mm.184925	NR_045088		A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	0.035000	0.442786	
mm_14497.1	chr2	132021191	132021391	+	1	NA	NA	NA	8697	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.010000	0.537313	3(GTTTATAGAGGG,+,0.00),59(GTTTATAAAAGG,-,0.00)
mm_4026.1	chr1	165767074	165767274	+	1	NA	NA	NA	3394	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.010000	0.427861	
mm_127095.1	chr15	97788016	97788216	+	1	NA	NA	NA	3751	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.030000	0.542289	
mm_57301.1	chr6	124542194	124542394	-	1	NA	NA	NA	27	NM_144938	50908	Mm.219527	NM_144938	ENSMUSG00000038521	C1s1	AA959438|AI255193|AI327365|C1s|C1sa	complement component 1, s subcomponent 1	protein-coding	0.000000	0.527363	47(CCTTAAAGAGAG,+,0.00)
mm_151155.1	chr19	53185615	53185815	+	1	NA	NA	NA	41718	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.020000	0.567164	
mm_41878.1	chr5	105198299	105198499	+	1	NA	NA	NA	41134	NM_001039646	626578	Mm.275893	NM_001039646	ENSMUSG00000105096	Gbp10	-	guanylate-binding protein 10	protein-coding	0.000000	0.557214	
mm_16926.1	chr2	13792934	13793134	-	1	NA	NA	NA	486	NM_145838	241230	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	0.040000	0.577114	
mm_79164.1	chr9	47832841	47833041	+	1	NA	NA	NA	-14733	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.015000	0.532338	
mm_69527.1	chr7	135652061	135652261	-	1	NA	NA	NA	153	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.030000	0.542289	71(CCTTAAAGGCAC,+,0.00)
mm_121062.1	chr14	88635934	88636134	+	1	NA	NA	NA	-164638	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding	0.010000	0.442786	
mm_22719.1	chr3	19311388	19311588	+	1	NA	NA	NA	-166	NM_001122759	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.205000	0.850746	
mm_170759.1	chr2	158468291	158468491	-	1	NA	NA	NA	-34221	NM_145635	246747	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	0.030000	0.587065	
mm_151973.1	chr19	5826609	5826809	-	1	NA	NA	NA	18769	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.010000	0.462687	
mm_171139.1	chr3	150073515	150073715	-	1	NA	NA	NA	798878	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.045000	0.402985	
mm_16612.1	chr2	5306391	5306591	-	1	NA	NA	NA	-72899	NR_030601	100124465		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.000000	0.427861	
mm_126104.1	chr15	78246324	78246524	+	1	NA	NA	NA	1613	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.020000	0.572139	
mm_167064.1	chr7	96210155	96210355	+	1	NA	NA	NA	-382	NM_011858	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.130000	0.736318	
mm_65697.1	chr7	28376983	28377183	-	1	NA	NA	NA	2145	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.015000	0.497512	
mm_105710.1	chr11	108321486	108321686	-	1	NA	NA	NA	22302	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.010000	0.388060	
mm_117277.1	chr13	65112833	65113033	-	1	NA	NA	NA	49	NM_001083901	66631	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	0.075000	0.601990	
mm_120910.1	chr14	76251381	76251581	+	1	NA	NA	NA	140590	NM_013745	27275	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.015000	0.552239	
mm_116109.1	chr13	28949926	28950126	-	1	NA	NA	NA	3656	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.025000	0.263682	
mm_151764.1	chr19	5205709	5205909	-	1	NA	NA	NA	67310	NM_153129	107975	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	0.000000	0.368159	
mm_86593.1	chr10	13129741	13129941	+	1	NA	NA	NA	38996	NR_131912	338438		NR_131912		Hymai	-	hydatidiform mole associated and imprinted transcript	ncRNA	0.005000	0.323383	-97(TTTTTTAAAGTG,+,0.00)
mm_30867.1	chr4	32015448	32015648	+	1	NA	NA	NA	51441	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.005000	0.477612	
mm_44494.1	chr5	23684485	23684685	-	1	NA	NA	NA	28082	NR_038090	433855	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	0.005000	0.502488	-80(GGTCATAAAAGG,-,0.00)
mm_145077.1	chr18	42275304	42275504	+	1	NA	NA	NA	51	NM_172626	225432	Mm.329400	NM_172626	ENSMUSG00000024491	Rbm27	A730010I06|AI043120|Psc1|mKIAA1311	RNA binding motif protein 27	protein-coding	0.075000	0.656716	
mm_167055.1	chr7	89338320	89338520	+	1	NA	NA	NA	367	NM_028343	72759	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.035000	0.666667	
mm_102257.1	chr11	55310608	55310808	-	1	NA	NA	NA	1549	NM_001029988	245827	Mm.339363	NM_001029988	ENSMUSG00000055333	Fat2	EMI2|Fath2|Gm523|mKIAA0811	FAT atypical cadherin 2	protein-coding	0.030000	0.537313	
mm_71390.1	chr8	46152541	46152741	+	1	NA	NA	NA	-16915	NM_025747	66756	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430|mKIAA1430	cilia and flagella associated protein 97	protein-coding	0.085000	0.636816	
mm_122023.1	chr14	28908954	28909154	-	1	NA	NA	NA	-109154	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding	0.000000	0.417910	
mm_2999.1	chr1	133245797	133245997	+	1	NA	NA	NA	-200	NM_001160268	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding	0.020000	0.587065	
mm_74295.1	chr8	125995290	125995490	+	1	NA	NA	NA	288	NM_008430	16525	Mm.10800	NM_008430	ENSMUSG00000033998	Kcnk1	AI788889|TWIK-1	potassium channel, subfamily K, member 1	protein-coding	0.115000	0.706468	
mm_23470.1	chr3	60479782	60479982	+	1	NA	NA	NA	7052	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.000000	0.283582	
mm_48770.1	chr5	148399926	148400126	-	1	NA	NA	NA	-122	NM_007513	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.080000	0.671642	
mm_83574.1	chr9	47529995	47530195	-	1	NA	NA	NA	-75	NM_001310841	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.110000	0.651741	83(CCTTTACTAGGA,+,0.00)
mm_160039.1	chr6	135310239	135310439	-	1	NA	NA	NA	45	NM_029595	76400	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	0.065000	0.651741	
mm_154778.1	chrX	12888133	12888333	+	1	NA	NA	NA	-48640	NM_001272033	245350	Mm.302695	NM_001272033		AA414768	OTTMUSG00000017000	expressed sequence AA414768	protein-coding	0.030000	0.432836	
mm_128302.1	chr15	37473966	37474166	-	1	NA	NA	NA	-14684	NM_001170868	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.005000	0.378109	
mm_40789.1	chr5	67450432	67450632	+	1	NA	NA	NA	-13366	NR_110363	320479	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	0.030000	0.412935	-100(GCTTTTAAGCCG,+,0.00)
mm_143870.1	chr17	84186823	84187023	-	1	NA	NA	NA	1024	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.110000	0.711443	
mm_125526.1	chr15	57839501	57839701	+	1	NA	NA	NA	52817	NM_024207	67819	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.035000	0.462687	9(AGCTTTTAAAGA,-,0.00),10(GCTTTTAAAGAA,+,0.00)
mm_93992.1	chr10	127525753	127525953	-	1	NA	NA	NA	-3409	NM_028230	108037	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0.035000	0.562189	45(CAGTATTAATGG,-,0.00)
mm_159782.1	chr5	106638161	106638361	-	1	NA	NA	NA	58569	NM_026856	52397	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.000000	0.477612	
mm_135355.1	chr16	43889404	43889604	-	1	NA	NA	NA	172	NM_029128	106248	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrtd1	3110012M05Rik|4930470H18Rik|AI648807|Qtrt2	queuine tRNA-ribosyltransferase domain containing 1	protein-coding	0.030000	0.467662	
mm_90980.1	chr10	13553019	13553219	-	1	NA	NA	NA	23	NM_019961	56535	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	0.105000	0.651741	
mm_119812.1	chr14	54222744	54222944	+	1	NA	NA	NA	31085	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.457711	
mm_12371.1	chr2	69821902	69822102	+	1	NA	NA	NA	-368	NM_177784	277396	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	0.025000	0.447761	
mm_132176.1	chr16	32385006	32385206	+	1	NA	NA	NA	-15400	NM_001160402	277203	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0.005000	0.407960	
mm_60790.1	chr7	45567075	45567275	+	1	NA	NA	NA	-2978	NM_009737	12036	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.020000	0.542289	-62(TCCTATAAAAAC,-,0.00)
mm_161404.1	chr14	122935885	122936085	-	1	NA	NA	NA	-22820	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.005000	0.457711	-61(CCACTTTAAAGG,-,0.00),-60(CACTTTAAAGGC,-,0.00),-59(ACTTTAAAGGCC,+,0.00)
mm_122300.1	chr14	34620625	34620825	-	1	NA	NA	NA	-20583	NM_013887	30044	Mm.272060	NM_013887	ENSMUSG00000021799	Opn4	1110007J02Rik|Gm533	opsin 4 (melanopsin)	protein-coding	0.010000	0.507463	
mm_97390.1	chr11	77801206	77801406	+	1	NA	NA	NA	8	NM_001291215	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.020000	0.646766	
mm_139869.1	chr17	70534480	70534680	+	1	NA	NA	NA	12470	NM_001128180	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.005000	0.412935	
mm_71264.1	chr8	40918493	40918693	+	1	NA	NA	NA	-7640	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.015000	0.437811	
mm_28846.1	chr3	96727344	96727544	-	1	NA	NA	NA	-5	NM_028925	74414	Mm.276043	NM_028925	ENSMUSG00000028099	Polr3c	4933407E01Rik|RPC3|RPC62	polymerase (RNA) III (DNA directed) polypeptide C	protein-coding	0.065000	0.597015	
mm_157853.1	chrX	74428817	74429017	-	1	NA	NA	NA	244	NM_008062	14381	Mm.27210	NM_008062	ENSMUSG00000031400	G6pdx	G28A|G6pd|Gpdx	glucose-6-phosphate dehydrogenase X-linked	protein-coding	0.060000	0.582090	
mm_49325.1	chr6	21214487	21214687	+	1	NA	NA	NA	-1522	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.055000	0.562189	
mm_159679.1	chr5	3571404	3571604	+	1	NA	NA	NA	-212	NM_029843	77036	Mm.389069	NM_029843	ENSMUSG00000008307	1700109H08Rik	-	RIKEN cDNA 1700109H08 gene	protein-coding	0.020000	0.432836	-73(TCTTTTAAACAG,+,0.00)
mm_16258.1	chr2	173275399	173275599	+	1	NA	NA	NA	1034	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.065000	0.572139	
mm_56280.1	chr6	91233838	91234038	-	1	NA	NA	NA	21174	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.000000	0.587065	
mm_172105.1	chr6	3183169	3183369	+	1	NA	NA	NA	-105250	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.040000	0.557214	
mm_159122.1	chr2	70038828	70039028	+	1	NA	NA	NA	-198	NM_177376	329421	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0.015000	0.567164	
mm_153475.1	chr19	41273662	41273862	-	1	NA	NA	NA	-9758	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.010000	0.492537	
mm_82950.1	chr9	35558435	35558635	-	1	NA	NA	NA	-65	NM_013932	30959	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	0.160000	0.786070	
mm_114528.1	chr13	73502787	73502987	+	1	NA	NA	NA	-33860	NM_010020	13162	Mm.41993	NM_010020	ENSMUSG00000021609	Slc6a3	DAT|Dat1	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	protein-coding	0.005000	0.383085	
mm_63580.1	chr7	128117977	128118177	+	1	NA	NA	NA	-11491	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.005000	0.472637	
mm_121009.1	chr14	79530600	79530800	+	1	NA	NA	NA	15026	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.010000	0.358209	
mm_156473.1	chrX	143664260	143664460	+	1	NA	NA	NA	-1385	NM_001195049	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding	0.030000	0.562189	
mm_5283.1	chr1	20617995	20618195	-	1	NA	NA	NA	-38	NM_153179	241035	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	0.020000	0.467662	
mm_161510.1	chr15	98437318	98437518	+	1	NA	NA	NA	-52	NM_146457	258449	Mm.324601	NM_146457	ENSMUSG00000063780	Olfr282	MOR160-2	olfactory receptor 282	protein-coding	0.030000	0.442786	
mm_83251.1	chr9	42401472	42401672	-	1	NA	NA	NA	-1643	NM_001324548	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.010000	0.507463	
mm_69616.1	chr7	137304505	137304705	-	1	NA	NA	NA	9840	NM_001113415	13593	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.005000	0.378109	
mm_145299.1	chr18	53320877	53321077	+	1	NA	NA	NA	75315	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.000000	0.447761	-72(GTGCATTAAAGC,-,0.00)
mm_109150.1	chr12	107378957	107379157	+	1	NA	NA	NA	356431	NR_045973	74968	Mm.359821	NR_045973	ENSMUSG00000085641	4930465M20Rik	4930431H15Rik	RIKEN cDNA 4930465M20 gene	ncRNA	0.005000	0.417910	
mm_84686.1	chr9	72111686	72111886	-	1	NA	NA	NA	33	NM_011544	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.125000	0.691542	
mm_15959.1	chr2	166003215	166003415	+	1	NA	NA	NA	10678	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.000000	0.422886	
mm_28818.1	chr3	96263233	96263433	-	1	NA	NA	NA	-16	NM_033596	97122	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0.050000	0.527363	
mm_23442.1	chr3	59432061	59432261	+	1	NA	NA	NA	-87905	NM_001162884	242050	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.015000	0.393035	
mm_35119.1	chr4	11007428	11007628	-	1	NA	NA	NA	91	NM_175175	71801	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.165000	0.776119	
mm_129648.1	chr15	80697509	80697709	-	1	NA	NA	NA	1	NR_045309	106059	Mm.442457	NR_045309		A430088P11Rik	-	RIKEN cDNA A430088P11 gene	ncRNA	0.015000	0.522388	
mm_62024.1	chr7	91608884	91609084	+	1	NA	NA	NA	-453410	NM_001243046	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.283582	
mm_56524.1	chr6	99521060	99521260	-	1	NA	NA	NA	-167	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.050000	0.611940	
mm_149552.1	chr19	12625326	12625526	+	1	NA	NA	NA	-7882	NM_145935	107146	Mm.39974	NM_145935	ENSMUSG00000063683	Glyat	A330009E03Rik|ACGNAT|AI195249|AI315345|CAT|GAT	glycine-N-acyltransferase	protein-coding	0.010000	0.353234	
mm_158848.1	chrX	169979141	169979341	-	1	NA	NA	NA	-324	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.060000	0.477612	
mm_161041.1	chr12	33302429	33302629	+	1	NA	NA	NA	14	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.025000	0.492537	
mm_75946.1	chr8	71591912	71592112	-	1	NA	NA	NA	-172	NM_025396	66171	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	0.085000	0.616915	
mm_139567.1	chr17	56997249	56997449	+	1	NA	NA	NA	10	NM_027372	66400	Mm.196150	NM_025538	ENSMUSG00000002661	Alkbh7	2310045B01Rik|2510008E23Rik|Abh7|Spata11	alkB homolog 7	protein-coding	0.060000	0.621891	
mm_37068.1	chr4	116144420	116144620	-	1	NA	NA	NA	96	NM_026547	68075	Mm.132803	NM_026547	ENSMUSG00000028701	Lurap1	1520402A15Rik|Lrp35a	leucine rich adaptor protein 1	protein-coding	0.090000	0.696517	
mm_140538.1	chr17	6778242	6778442	-	1	NA	NA	NA	4438	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.020000	0.358209	26(CCTTTTAGAGAG,+,0.00)
mm_71811.1	chr8	68880627	68880827	+	1	NA	NA	NA	172	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.060000	0.626866	
mm_24258.1	chr3	89186682	89186882	+	1	NA	NA	NA	3557	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.030000	0.582090	
mm_106127.1	chr11	116429408	116429608	-	1	NA	NA	NA	-4586	NM_176902	319370	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	0.015000	0.577114	
mm_100775.1	chr11	4789738	4789938	-	1	NA	NA	NA	-43060	NM_138948	192650	Mm.207056	NM_138948	ENSMUSG00000009075	Cabp7	-	calcium binding protein 7	protein-coding	0.020000	0.552239	
mm_169178.1	chr13	65812959	65813159	-	1	NA	NA	NA	-300394	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.020000	0.522388	
mm_36776.1	chr4	102921676	102921876	-	1	NA	NA	NA	-64603	NM_001163767	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.005000	0.447761	
mm_159071.1	chr2	25242940	25243140	+	1	NA	NA	NA	111	NM_176834	68846	Mm.24777	NM_176834	ENSMUSG00000044628	Rnf208	1110061N23Rik	ring finger protein 208	protein-coding	0.015000	0.636816	
mm_112674.1	chr13	16027502	16027702	+	1	NA	NA	NA	15751	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.442786	-12(GAGTTTTAAAGG,-,0.00),-10(GTTTTAAAGGGC,+,0.00)
mm_35784.1	chr4	46452494	46452694	-	1	NA	NA	NA	1668	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.060000	0.666667	
mm_158732.1	chrX	163958554	163958754	-	1	NA	NA	NA	12	NM_009453	22184	Mm.426178	NM_009453	ENSMUSG00000031370	Zrsr2	35kDa|5031411E02Rik|A230052C13Rik|C77286|U2af1-rs2|URP	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	protein-coding	0.080000	0.656716	
mm_167189.1	chr7	142511421	142511621	+	1	NA	NA	NA	-4750	NR_033261	677289	Mm.350054	NR_033261	ENSMUSG00000043795	Prr33	ENSMUSG00000043795|Gm14492|OTTMUSG00000016823	proline rich 33	ncRNA	0.035000	0.557214	
mm_102842.1	chr11	69364857	69365057	-	1	NA	NA	NA	4469	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.015000	0.532338	
mm_66975.1	chr7	63923316	63923516	-	1	NA	NA	NA	6559	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.005000	0.427861	
mm_170994.1	chr2	75191733	75191933	-	1	NA	NA	NA	252346	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA	0.045000	0.497512	
mm_101751.1	chr11	43381246	43381446	-	1	NA	NA	NA	-6885	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.025000	0.432836	64(GCTTTTCGAGTC,+,0.00)
mm_85177.1	chr9	96539786	96539986	-	1	NA	NA	NA	-61211	NM_001311135	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.005000	0.313433	
mm_113959.1	chr13	51165914	51166114	+	1	NA	NA	NA	-5011	NM_029173	75124	Mm.179243	NM_029173	ENSMUSG00000021396	Nxnl2	4930519N16Rik|Rdcvf2	nucleoredoxin-like 2	protein-coding	0.000000	0.407960	
mm_161484.1	chr15	84122917	84123117	-	1	NA	NA	NA	158	NM_029427	75772	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0.035000	0.597015	
mm_159210.1	chr2	121955747	121955947	-	1	NA	NA	NA	-154	NM_001290992	329506	Mm.249405	NM_212450	ENSMUSG00000033411	Ctdspl2	D2Ertd485e	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	protein-coding	0.090000	0.681592	
mm_158068.1	chrX	101222394	101222594	-	1	NA	NA	NA	69	NM_001110311	55988	Mm.206949	NM_018875	ENSMUSG00000046032	Snx12	2610001F05Rik|AW045757|SDP8	sorting nexin 12	protein-coding	0.125000	0.696517	
mm_116853.1	chr13	54759836	54760036	-	1	NA	NA	NA	6504	NM_033610	104069	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	0.010000	0.592040	
mm_45606.1	chr5	75044584	75044784	-	1	NA	NA	NA	-43	NM_028850	74277	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	0.185000	0.810945	
mm_11478.1	chr2	32384747	32384947	+	1	NA	NA	NA	2892	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.015000	0.572139	
mm_19934.1	chr2	116065598	116065798	-	1	NA	NA	NA	-640	NM_010825	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.090000	0.621891	
mm_54562.1	chr6	37441819	37442019	-	1	NA	NA	NA	229	NM_178661	208647	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.100000	0.676617	
mm_132247.1	chr16	32751246	32751446	+	1	NA	NA	NA	15460	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.015000	0.437811	
mm_41056.1	chr5	86804242	86804442	+	1	NA	NA	NA	76	NM_001347376	231386	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.080000	0.651741	
mm_112315.1	chr12	114937495	114937695	-	1	NA	NA	NA	-423901	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.005000	0.393035	-35(GTGTTTAAAAAC,-,0.00)
mm_77378.1	chr8	119840104	119840304	-	1	NA	NA	NA	375	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.065000	0.582090	
mm_47360.1	chr5	122821207	122821407	-	1	NA	NA	NA	35	NM_021505	59008	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	0.075000	0.636816	
mm_126935.1	chr15	91772179	91772379	+	1	NA	NA	NA	-66047	NM_207243	239611	Mm.486225	NM_207243		Muc19	MUC-19|sld	mucin 19	protein-coding	0.010000	0.432836	
mm_67549.1	chr7	81497065	81497265	-	1	NA	NA	NA	1165	NM_183143	210321	Mm.99511	NM_183143	ENSMUSG00000061877	BC048679	-	cDNA sequence BC048679	protein-coding	0.000000	0.502488	
mm_20909.1	chr2	150600247	150600447	-	1	NA	NA	NA	8176	NM_027977	71881	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	0.010000	0.512438	
mm_123917.1	chr14	73362914	73363114	-	1	NA	NA	NA	22257	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.010000	0.378109	
mm_28137.1	chr3	87207921	87208121	-	1	NA	NA	NA	-33274	NM_130867	170643	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kin of IRRE like (Drosophila)	protein-coding	0.015000	0.512438	
mm_115764.1	chr13	19193580	19193780	-	1	NA	NA	NA	202133	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.378109	
mm_60957.1	chr7	47054499	47054699	+	1	NA	NA	NA	3959	NM_026436	67893	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.000000	0.512438	
mm_101713.1	chr11	42133598	42133798	-	1	NA	NA	NA	49232	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding	0.020000	0.457711	
mm_116172.1	chr13	30817399	30817599	-	1	NA	NA	NA	68266	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.005000	0.452736	
mm_69117.1	chr7	127025850	127026050	-	1	NA	NA	NA	529	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.130000	0.781095	
mm_106752.1	chr12	4132987	4133187	+	1	NA	NA	NA	-310	NM_001159537	104111	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.060000	0.666667	
mm_133260.1	chr16	77329543	77329743	+	1	NA	NA	NA	315	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.020000	0.447761	
mm_43224.1	chr5	129791706	129791906	+	1	NA	NA	NA	-2755	NR_003681	100113364	Mm.449738	NR_003681	ENSMUSG00000093413	Snora15	MBI-79	small nucleolar RNA, H/ACA box 15	snoRNA	0.000000	0.303483	-82(CCCCTTAAAAAA,-,0.00),-80(CCTTAAAAAAAC,+,0.00),-33(TTTTTAATAGAG,+,0.00)
mm_107692.1	chr12	55377086	55377286	+	1	NA	NA	NA	6491	NR_035430	100316807		NR_035430	ENSMUSG00000080645	Mir1198	Mirn1198|mmu-mir-1198	microRNA 1198	ncRNA	0.010000	0.492537	
mm_164068.1	chr14	118662646	118662846	-	1	NA	NA	NA	14185	NM_001163675	239273	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.030000	0.497512	
mm_118209.1	chr13	110060419	110060619	-	1	NA	NA	NA	156710	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.015000	0.427861	
mm_157544.1	chrX	51205817	51206017	-	1	NA	NA	NA	73	NM_001310515	171170	Mm.295324	NM_134163	ENSMUSG00000036109	Mbnl3	A530038J18Rik|AI661274|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL	muscleblind-like 3 (Drosophila)	protein-coding	0.135000	0.661692	
mm_169577.1	chr15	22714101	22714301	-	1	NA	NA	NA	783	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding	0.040000	0.547264	
mm_85319.1	chr9	101251649	101251849	-	1	NA	NA	NA	83	NM_001161362	235542	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0.135000	0.766169	
mm_110945.1	chr12	76612618	76612818	-	1	NA	NA	NA	-64793	NR_046044	100504549	Mm.440349	NR_046044		AI463170	-	expressed sequence AI463170	ncRNA	0.045000	0.577114	
mm_154753.1	chrX	10714947	10715147	+	1	NA	NA	NA	-2318	NM_026524	68041	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	0.030000	0.562189	
mm_61251.1	chr7	65803962	65804162	+	1	NA	NA	NA	10	NR_045301	100503969	Mm.383527	NR_045301		1810008I18Rik	-	RIKEN cDNA 1810008I18 gene	ncRNA	0.010000	0.567164	
mm_87296.1	chr10	42533109	42533309	+	1	NA	NA	NA	31155	NM_017472	54198	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.020000	0.482587	-16(TCCTTTTAGAGG,-,0.00),-15(CCTTTTAGAGGA,+,0.00)
mm_83409.1	chr9	44802760	44802960	-	1	NA	NA	NA	91	NM_138951	192653	Mm.325487	NM_138951	ENSMUSG00000039438	Ttc36	-	tetratricopeptide repeat domain 36	protein-coding	0.010000	0.567164	
mm_138205.1	chr17	34300768	34300968	+	1	NA	NA	NA	-4999	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.035000	0.552239	
mm_69429.1	chr7	132813559	132813759	-	1	NA	NA	NA	-463	NM_212473	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.150000	0.681592	
mm_14935.1	chr2	151542721	151542921	+	1	NA	NA	NA	338	NM_001302078	14225	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.105000	0.711443	
mm_88708.1	chr10	80150719	80150919	+	1	NA	NA	NA	1137	NM_001305799	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.050000	0.681592	
mm_115760.1	chr13	19193462	19193662	-	1	NA	NA	NA	202251	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.492537	
mm_63796.1	chr7	132931051	132931251	+	1	NA	NA	NA	-18471	NM_207302	360216	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0.115000	0.666667	
mm_142077.1	chr17	35701930	35702130	-	1	NA	NA	NA	14	NM_001198831	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.030000	0.626866	
mm_36356.1	chr4	75278192	75278392	-	1	NA	NA	NA	-6	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.070000	0.582090	
mm_168478.1	chr11	48992148	48992348	-	1	NA	NA	NA	-2	NM_011579	21822	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	0.010000	0.462687	
mm_140887.1	chr17	23955185	23955385	-	1	NA	NA	NA	-12	NM_001077421	638345	Mm.46428	NM_001077421	ENSMUSG00000024125	Sbpl	2310068J22Rik	spermine binding protein-like	protein-coding	0.010000	0.542289	-21(GGGTATAAAGGG,-,0.00)
mm_94232.1	chr11	3290724	3290924	+	1	NA	NA	NA	367	NM_019574	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.120000	0.676617	
mm_22120.1	chr2	170158331	170158531	-	1	NA	NA	NA	-15756	NM_001159683	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.020000	0.562189	
mm_91972.1	chr10	61433132	61433332	-	1	NA	NA	NA	15260	NM_013611	18119	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0.005000	0.552239	
mm_10822.1	chr2	24353260	24353460	+	1	NA	NA	NA	7989	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.000000	0.502488	-35(CCCTTTAAAAGG,+,0.00),-35(CCCTTTAAAAGG,-,0.00),-34(CCTTTAAAAGGT,+,0.00),-33(CTTTAAAAGGTC,+,0.00)
mm_26157.1	chr3	138217696	138217896	+	1	NA	NA	NA	23	NM_009626	11529	Mm.8473	NM_009626	ENSMUSG00000055301	Adh7	AI325182|Adh-3|Adh-3e|Adh-3t|Adh3|Adh3-e|Adh3-t|Adh4|Adt-1	alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide	protein-coding	0.020000	0.512438	
mm_121044.1	chr14	80022136	80022336	+	1	NA	NA	NA	21934	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding	0.010000	0.412935	
mm_79112.1	chr9	46270171	46270371	+	1	NA	NA	NA	1663	NM_080434	66113	Mm.29738	NM_080434	ENSMUSG00000032079	Apoa5	1300007O05Rik|Apoav|RAP3	apolipoprotein A-V	protein-coding	0.070000	0.611940	
mm_163975.1	chr14	55758342	55758542	-	1	NA	NA	NA	-18	NM_009894	12684	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	0.020000	0.477612	
mm_83886.1	chr9	55478775	55478975	-	1	NA	NA	NA	33368	NM_145615	110842	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	0.000000	0.388060	
mm_95579.1	chr11	52764572	52764772	+	1	NA	NA	NA	-34	NM_177059	320027	Mm.44518	NM_177059	ENSMUSG00000036264	Fstl4	B230374F23Rik|SPIG1|mKIAA1061	follistatin-like 4	protein-coding	0.115000	0.731343	
mm_171973.1	chr5	88626613	88626813	+	1	NA	NA	NA	43200	NM_027530	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.030000	0.432836	85(GTTTTTATAGAA,+,0.00)
mm_157405.1	chrX	38435339	38435539	-	1	NA	NA	NA	21021	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.005000	0.393035	
mm_111698.1	chr12	103657029	103657229	-	1	NA	NA	NA	89	NM_007618	12401	Mm.290079	NM_007618	ENSMUSG00000060807	Serpina6	Cbg	serine (or cysteine) peptidase inhibitor, clade A, member 6	protein-coding	0.015000	0.557214	
mm_129820.1	chr15	83033163	83033363	-	1	NA	NA	NA	134	NM_001271412	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.035000	0.601990	
mm_169988.1	chr17	15041705	15041905	+	1	NA	NA	NA	193	NM_001039552	381062	Mm.393767	NM_183133	ENSMUSG00000036552	Ermard	2210404J11Rik|2410011O22Rik|AI448938	ER membrane associated RNA degradation	protein-coding	0.045000	0.532338	
mm_82846.1	chr9	31170435	31170635	-	1	NA	NA	NA	-38736	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.025000	0.507463	-76(CCTTATATAGCT,+,0.00)
mm_95915.1	chr11	58220396	58220596	+	1	NA	NA	NA	5519	NM_019440	54396	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	0.020000	0.467662	
mm_25810.1	chr3	127790014	127790214	+	1	NA	NA	NA	201	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.070000	0.666667	
mm_17723.1	chr2	32409128	32409328	-	1	NA	NA	NA	13338	NM_133783	96979	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	0.020000	0.507463	
mm_141179.1	chr17	26841484	26841684	-	1	NA	NA	NA	-19	NM_008700	18091	Mm.41974	NM_008700	ENSMUSG00000015579	Nkx2-5	Csx|Nkx-2.5|Nkx2.5|tinman	NK2 homeobox 5	protein-coding	0.050000	0.582090	-79(CCCTTTAAAAAA,-,0.00)
mm_110485.1	chr12	51939835	51940035	-	1	NA	NA	NA	31386	NM_177171	320487	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	0.015000	0.437811	-55(CCATTTATGTGC,+,0.00),62(CTTTTTCTGGGC,+,0.00)
mm_126103.1	chr15	78244936	78245136	+	1	NA	NA	NA	225	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.010000	0.567164	
mm_100961.1	chr11	6637153	6637353	-	1	NA	NA	NA	1396	NM_011709	22373	Mm.268094	NM_011709	ENSMUSG00000000381	Wap	-	whey acidic protein	protein-coding	0.030000	0.567164	
mm_122293.1	chr14	34567440	34567640	-	1	NA	NA	NA	21067	NM_001039074	24131	Mm.29733	NM_011918	ENSMUSG00000021798	Ldb3	AW742271|PDLIM6|ZASP	LIM domain binding 3	protein-coding	0.030000	0.611940	
mm_55937.1	chr6	84771162	84771362	-	1	NA	NA	NA	-177354	NM_001177713	232174	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.005000	0.293532	-89(ATGTATAAAAGG,-,0.00)
mm_9670.1	chr1	178318081	178318281	-	1	NA	NA	NA	-972	NM_025511	66359	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0.045000	0.472637	
mm_29330.1	chr3	108085330	108085530	-	1	NA	NA	NA	-4	NM_001289720	109674	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0.055000	0.676617	
mm_151266.1	chr19	54045496	54045696	+	1	NA	NA	NA	414	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	0.085000	0.716418	
mm_85486.1	chr9	106096717	106096917	-	1	NA	NA	NA	-126	NM_026763	68553	Mm.28854	NM_026763	ENSMUSG00000032572	Col6a4	1110001D15Rik|AI413310|AU023415|Dvwa|EG235580|Vwa6	collagen, type VI, alpha 4	protein-coding	0.020000	0.557214	
mm_110804.1	chr12	72212392	72212592	-	1	NA	NA	NA	23254	NR_104446	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.025000	0.502488	
mm_158984.1	chr1	131599094	131599294	+	1	NA	NA	NA	80	NM_011924	26361	Mm.89986	NM_011924	ENSMUSG00000026432	Avpr1b	AVPR3|V3/V1b|VIBR|VPR3	arginine vasopressin receptor 1B	protein-coding	0.045000	0.601990	
mm_118129.1	chr13	104621549	104621749	-	1	NA	NA	NA	195304	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.030000	0.542289	-33(GGGCATAAATAG,-,0.00)
mm_19258.1	chr2	84775300	84775500	-	1	NA	NA	NA	29	NM_009776	12258	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.005000	0.512438	
mm_2379.1	chr1	93373768	93373968	+	1	NA	NA	NA	-28	NM_207031	404545	Mm.297411	NM_207031	ENSMUSG00000034107	Ano7	Ngep|Ngep-L|Pcanap5|Tmem16g	anoctamin 7	protein-coding	0.005000	0.597015	
mm_14422.1	chr2	130482290	130482490	+	1	NA	NA	NA	32112	NM_001163688	19262	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	0.015000	0.432836	-80(GAGCATATAAGA,-,0.00),-66(ACTTATATAGAG,+,0.00)
mm_20024.1	chr2	119442761	119442961	-	1	NA	NA	NA	34768	NM_026574	68142	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	0.025000	0.363184	
mm_78750.1	chr9	42142045	42142245	+	1	NA	NA	NA	-17856	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.000000	0.487562	
mm_120753.1	chr14	73334014	73334214	+	1	NA	NA	NA	-8323	NM_009029	19645	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb	retinoblastoma 1	protein-coding	0.000000	0.432836	
mm_137032.1	chr17	17890005	17890205	+	1	NA	NA	NA	2281	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.005000	0.343284	
mm_73775.1	chr8	116605851	116606051	+	1	NA	NA	NA	100936	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.025000	0.487562	
mm_134047.1	chr16	5222178	5222378	-	1	NA	NA	NA	21	NM_001033220	239691	Mm.325639	NM_001033220	ENSMUSG00000051669	AU021092	-	expressed sequence AU021092	protein-coding	0.015000	0.557214	-48(GTGTTTAAAGGA,-,0.00)
mm_26278.1	chr3	142505465	142505665	+	1	NA	NA	NA	8631	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.030000	0.542289	
mm_24998.1	chr3	97633064	97633264	+	1	NA	NA	NA	4326	NM_010232	14263	Mm.385180	NM_010232	ENSMUSG00000028088	Fmo5	5033418D19Rik|AI195026	flavin containing monooxygenase 5	protein-coding	0.010000	0.398010	
mm_7777.1	chr1	131276603	131276803	-	1	NA	NA	NA	2860	NM_019777	56489	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.010000	0.582090	27(CCCTTTATGGGA,+,0.00)
mm_170322.1	chr18	4197010	4197210	-	1	NA	NA	NA	31278	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.005000	0.407960	
mm_104697.1	chr11	97955189	97955389	-	1	NA	NA	NA	31157	NM_028199	72324	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0.010000	0.552239	
mm_145073.1	chr18	42053633	42053833	+	1	NA	NA	NA	23	NM_001146299	269016	Mm.45472	NM_172966	ENSMUSG00000057719	Sh3rf2	2310046K19|9130023G24Rik|AI452083|Ppp1r39|RNF158	SH3 domain containing ring finger 2	protein-coding	0.015000	0.502488	
mm_4089.1	chr1	167089019	167089219	+	1	NA	NA	NA	87702	NM_001160261	226610	Mm.389217	NM_175461	ENSMUSG00000060568	Fam78b	C030014K22Rik|C030020L09Rik	family with sequence similarity 78, member B	protein-coding	0.005000	0.487562	
mm_28600.1	chr3	94580033	94580233	-	1	NA	NA	NA	2583	NM_001082484	76742	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.000000	0.308458	
mm_105323.1	chr11	102893422	102893622	-	1	NA	NA	NA	3678	NM_001131020	14580	Mm.1239	NM_010277	ENSMUSG00000020932	Gfap	AI836096	glial fibrillary acidic protein	protein-coding	0.075000	0.611940	
mm_42275.1	chr5	114146595	114146795	+	1	NA	NA	NA	15539	NM_011677	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.020000	0.532338	
mm_165237.1	chr2	61804682	61804882	+	1	NA	NA	NA	329	NM_009322	21375	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.020000	0.487562	
mm_102207.1	chr11	54787619	54787819	-	1	NA	NA	NA	-16	NM_178626	72729	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.085000	0.711443	
mm_55119.1	chr6	50396973	50397173	-	1	NA	NA	NA	-14236	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.020000	0.437811	
mm_33739.1	chr4	134121751	134121951	+	1	NA	NA	NA	6902	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.005000	0.467662	
mm_11975.1	chr2	55105469	55105669	+	1	NA	NA	NA	-330401	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.000000	0.368159	
mm_22321.1	chr2	180642184	180642384	-	1	NA	NA	NA	407	NM_178254	277353	Mm.473700	NM_178254	ENSMUSG00000038932	Tcfl5	AV260129|Figlb|Sosf1	transcription factor-like 5 (basic helix-loop-helix)	protein-coding	0.180000	0.800995	
mm_91760.1	chr10	51485667	51485867	-	1	NA	NA	NA	-5131	NM_001291894	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.015000	0.472637	
mm_78899.1	chr9	44673087	44673287	+	1	NA	NA	NA	-46	NM_001277851	58866	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0.015000	0.582090	
mm_37912.1	chr4	132757154	132757354	-	1	NA	NA	NA	-83	NM_133888	100340	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	0.040000	0.522388	
mm_133706.1	chr16	93152962	93153162	+	1	NA	NA	NA	200127	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.020000	0.537313	
mm_97458.1	chr11	78245004	78245204	+	1	NA	NA	NA	599	NM_009297	20926	Mm.20755	NM_009297	ENSMUSG00000002052	Supt6	5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162	suppressor of Ty 6	protein-coding	0.035000	0.437811	
mm_122.1	chr1	9806910	9807110	+	1	NA	NA	NA	8880	NM_177547	170755	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.075000	0.641791	
mm_127651.1	chr15	102490622	102490822	+	1	NA	NA	NA	20090	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.030000	0.472637	
mm_93436.1	chr10	109010869	109011069	-	1	NA	NA	NA	6	NM_009306	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding	0.040000	0.597015	
mm_125005.1	chr15	25363393	25363593	+	1	NA	NA	NA	50271	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.025000	0.398010	
mm_71341.1	chr8	45627632	45627832	+	1	NA	NA	NA	-19	NM_001310707	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.015000	0.482587	46(GCATTTAAAAAG,-,0.00)
mm_1655.1	chr1	74713036	74713236	+	1	NA	NA	NA	-399	NM_024264	104086	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0.030000	0.492537	
mm_129353.1	chr15	77927779	77927979	-	1	NA	NA	NA	1115	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.010000	0.587065	
mm_128371.1	chr15	42676006	42676206	-	1	NA	NA	NA	871	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.020000	0.487562	
mm_149924.1	chr19	26623345	26623545	+	1	NA	NA	NA	18285	NM_011416	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.015000	0.457711	
mm_13890.1	chr2	120404112	120404312	+	1	NA	NA	NA	-96	NM_001110496	211499	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0.060000	0.572139	
mm_27386.1	chr3	50628353	50628553	-	1	NA	NA	NA	-184840	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.025000	0.487562	
mm_165910.1	chr4	57578572	57578772	+	1	NA	NA	NA	10424	NM_172868	242481	Mm.331630	NM_172868	ENSMUSG00000090053	Palm2	53-H12|B130066I24|R75368|pEN70	paralemmin 2	protein-coding	0.000000	0.393035	
mm_129858.1	chr15	83265846	83266046	-	1	NA	NA	NA	-14172	NM_001004150	239559	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	0.000000	0.442786	-61(CCCTTTAAACTC,+,0.00),-33(CTGTATAAAAGC,-,0.00)
mm_77748.1	chr8	127441081	127441281	-	1	NA	NA	NA	141529	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.020000	0.547264	
mm_167554.1	chr9	35194049	35194249	-	1	NA	NA	NA	5756	NM_001177847	117149	Mm.23987	NM_054096	ENSMUSG00000032041	Tirap	AA407980|C130027E04Rik|Mal|Tlr4ap|Wyatt	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	protein-coding	0.015000	0.477612	
mm_156239.1	chrX	136201597	136201797	+	1	NA	NA	NA	2154	NM_177919	331532	Mm.41605	NM_177919	ENSMUSG00000054034	Tceal5	6430401A05Rik	transcription elongation factor A (SII)-like 5	protein-coding	0.010000	0.512438	
mm_223.1	chr1	17601751	17601951	+	1	NA	NA	NA	-50	NM_053191	94227	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	0.000000	0.427861	18(ACATATAAAAGC,-,0.00)
mm_47956.1	chr5	135572916	135573116	-	1	NA	NA	NA	27	NM_019577	56221	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0.040000	0.582090	-62(GTCCATATAAAG,-,0.00),-60(CCATATAAAGAC,+,0.00)
mm_165153.1	chr2	21501767	21501967	+	1	NA	NA	NA	134300	NM_001004761	241263	Mm.166647	NM_175706	ENSMUSG00000045967	Gpr158	5330427M13Rik|mKIAA1136	G protein-coupled receptor 158	protein-coding	0.000000	0.393035	35(CCCTTTATAAAC,+,0.00),35(CCCTTTATAAAC,-,0.00)
mm_124411.1	chr14	116065853	116066053	-	1	NA	NA	NA	-656401	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0.015000	0.368159	
mm_42378.1	chr5	114929859	114930059	+	1	NA	NA	NA	6719	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.050000	0.562189	
mm_125504.1	chr15	55307702	55307902	+	1	NA	NA	NA	52	NM_181277	12818	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.045000	0.562189	
mm_120221.1	chr14	62837642	62837842	+	1	NA	NA	NA	21	NR_106174	102465889		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	0.090000	0.711443	
mm_31017.1	chr4	40722857	40723057	+	1	NA	NA	NA	27	NM_001164672	15502	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0.100000	0.721393	
mm_102983.1	chr11	69681828	69682028	-	1	NA	NA	NA	42	NM_030702	80886	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0.120000	0.731343	
mm_10728.1	chr2	22895384	22895584	+	1	NA	NA	NA	-38	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.095000	0.626866	
mm_108107.1	chr12	75308298	75308498	+	1	NA	NA	NA	85	NM_023275	80837	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	0.035000	0.547264	-6(CCGTTTAAAAGC,-,0.00)
mm_55907.1	chr6	83703448	83703648	-	1	NA	NA	NA	7258	NR_075094	574519	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	0.045000	0.587065	
mm_10348.1	chr2	11689717	11689917	+	1	NA	NA	NA	-15476	NM_001271498	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.015000	0.487562	
mm_154127.1	chr19	57241614	57241814	-	1	NA	NA	NA	-25682	NM_178688	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.010000	0.328358	
mm_124098.1	chr14	79300217	79300417	-	1	NA	NA	NA	1318	NM_025427	66214	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	0.025000	0.497512	
mm_165296.1	chr2	91098979	91099179	+	1	NA	NA	NA	2401	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.025000	0.532338	
mm_57877.1	chr6	131243861	131244061	-	1	NA	NA	NA	3401	NM_001170851	16633	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	0.000000	0.373134	
mm_64293.1	chr7	141858771	141858971	+	1	NA	NA	NA	19799	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.010000	0.547264	
mm_124839.1	chr15	9370239	9370439	+	1	NA	NA	NA	34741	NM_144845	223337	Mm.422853	NM_144845	ENSMUSG00000049152	Ugt3a2	AI313915	UDP glycosyltransferases 3 family, polypeptide A2	protein-coding	0.010000	0.487562	
mm_137040.1	chr17	17893735	17893935	+	1	NA	NA	NA	6011	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.000000	0.402985	
mm_151955.1	chr19	5801249	5801449	-	1	NA	NA	NA	1323	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.015000	0.497512	-62(GCTTTTAAAATC,+,0.00),-61(CTTTTAAAATCC,+,0.00)
mm_73902.1	chr8	119446656	119446856	+	1	NA	NA	NA	37	NM_054095	117148	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	0.090000	0.751244	
mm_17384.1	chr2	27027180	27027380	-	1	NA	NA	NA	718	NM_172659	227659	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.010000	0.532338	-77(GTCCATTTAAAG,-,0.00),-75(CCATTTAAAGGA,+,0.00)
mm_38595.1	chr4	141825520	141825720	-	1	NA	NA	NA	385	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.000000	0.532338	
mm_147588.1	chr18	56562135	56562335	-	1	NA	NA	NA	63	NM_138600	110695	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	0.060000	0.671642	
mm_7675.1	chr1	128588935	128589135	-	1	NA	NA	NA	3264	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.025000	0.542289	
mm_140027.1	chr17	73950268	73950468	+	1	NA	NA	NA	-172	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.005000	0.517413	
mm_101190.1	chr11	17953779	17953979	-	1	NA	NA	NA	-4	NM_026576	68145	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	0.090000	0.606965	
mm_169415.1	chr14	52948478	52948678	+	1	NA	NA	NA	-452883	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.000000	0.477612	
mm_10942.1	chr2	25501730	25501930	+	1	NA	NA	NA	-111	NM_001271777	69379	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	0.020000	0.597015	
mm_128910.1	chr15	73487228	73487428	-	1	NA	NA	NA	-25232	NM_001081066	105841	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.005000	0.547264	
mm_29169.1	chr3	106486235	106486435	-	1	NA	NA	NA	295	NM_028110	72121	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.030000	0.512438	-75(GAGCATATAAAG,-,0.00),-73(GCATATAAAGGA,+,0.00),-34(GCCCATAAAAAG,-,0.00)
mm_12703.1	chr2	76537423	76537623	+	1	NA	NA	NA	38517	NM_001290735	99031	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding	0.015000	0.512438	
mm_63916.1	chr7	139248120	139248320	+	1	NA	NA	NA	-262	NM_001033206	101631	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.060000	0.681592	
mm_17218.1	chr2	25493833	25494033	-	1	NA	NA	NA	-22	NM_029958	77701	Mm.99123	NM_029958	ENSMUSG00000026943	Lcn12	9230102M18Rik	lipocalin 12	protein-coding	0.015000	0.606965	
mm_54688.1	chr6	39420402	39420602	-	1	NA	NA	NA	-133	NM_018810	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.090000	0.661692	-35(GCCCCTTTAGGG,-,0.00),-33(CCCTTTAGGGCG,+,0.00)
mm_25606.1	chr3	117575399	117575599	+	1	NA	NA	NA	272	NM_001305451	75769	Mm.72187	NM_029425	ENSMUSG00000033342	Plppr5	4833424O15Rik|Lppr5|PRG-5|Pap2d	phospholipid phosphatase related 5	protein-coding	0.130000	0.786070	
mm_6114.1	chr1	64121145	64121345	-	1	NA	NA	NA	144	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.020000	0.532338	
mm_100121.1	chr11	115899849	115900049	+	1	NA	NA	NA	-190	NM_183259	66528	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	0.015000	0.592040	
mm_110769.1	chr12	70269139	70269339	-	1	NA	NA	NA	-39266	NR_037248	100526482		NR_037248	ENSMUSG00000078026	Mir466o	Mir4660|mmu-mir-466o	microRNA 466o	ncRNA	0.005000	0.363184	9(GGCTATATATGA,-,0.00)
mm_108240.1	chr12	78194132	78194332	+	1	NA	NA	NA	-32423	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.000000	0.398010	62(GCTTTAATATTC,+,0.00)
mm_38878.1	chr4	149697752	149697952	-	1	NA	NA	NA	856	NM_001164050	18707	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol 3-kinase catalytic delta polypeptide	protein-coding	0.015000	0.353234	
mm_136141.1	chr16	87440420	87440620	-	1	NA	NA	NA	72	NM_016924	53858	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	0.100000	0.676617	
mm_140992.1	chr17	24850232	24850432	-	1	NA	NA	NA	-30	NM_023480	68636	Mm.347964	NM_023480	ENSMUSG00000045316	Fahd1	1110025H10Rik|AV002085	fumarylacetoacetate hydrolase domain containing 1	protein-coding	0.050000	0.636816	
mm_130677.1	chr15	100675326	100675526	-	1	NA	NA	NA	-5926	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.025000	0.527363	
mm_87011.1	chr10	26881110	26881310	+	1	NA	NA	NA	108698	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.005000	0.407960	
mm_76303.1	chr8	84257182	84257382	-	1	NA	NA	NA	42	NM_026423	67873	Mm.278085	NM_026423	ENSMUSG00000004996	Mri1	2410018C20Rik	methylthioribose-1-phosphate isomerase 1	protein-coding	0.095000	0.651741	
mm_34889.1	chr4	155601329	155601529	+	1	NA	NA	NA	13	NM_177186	320541	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	0.080000	0.636816	
mm_4053.1	chr1	165809348	165809548	+	1	NA	NA	NA	20767	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.000000	0.383085	
mm_60924.1	chr7	46847010	46847210	+	1	NA	NA	NA	28	NM_001136069	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.060000	0.582090	
mm_92393.1	chr10	76599320	76599520	-	1	NA	NA	NA	23772	NM_080845	14317	Mm.36278	NM_080845	ENSMUSG00000001155	Ftcd	-	formiminotransferase cyclodeaminase	protein-coding	0.005000	0.477612	
mm_24514.1	chr3	92689199	92689399	+	1	NA	NA	NA	-2089	NM_027137	69611	Mm.176243	NM_027137	ENSMUSG00000103243	Lce1d	2310037L11Rik|AI415320|Sprrl7	late cornified envelope 1D	protein-coding	0.060000	0.562189	
mm_146463.1	chr18	86711544	86711744	+	1	NA	NA	NA	-421	NM_172633	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.085000	0.671642	
mm_10980.1	chr2	25823594	25823794	+	1	NA	NA	NA	541	NM_029959	77704	Mm.159974	NM_029959	ENSMUSG00000023210	Lcn9	9230102I19Rik	lipocalin 9	protein-coding	0.020000	0.477612	
mm_116288.1	chr13	35026988	35027188	-	1	NA	NA	NA	-32944	NM_001110331	23986	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0.030000	0.507463	
mm_117769.1	chr13	96542240	96542440	-	1	NA	NA	NA	239	NM_012048	27015	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	0.060000	0.582090	
mm_91835.1	chr10	57516824	57517024	-	1	NA	NA	NA	15605	NM_019760	56442	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	0.000000	0.308458	
mm_137058.1	chr17	17937668	17937868	+	1	NA	NA	NA	-32690	NM_008042	14294	Mm.378918	NM_008042	ENSMUSG00000079700	Fpr3	ALX|Fpr-rs1|Fpr-s1|Fprl1|LXA4-R|Lxa4r	formyl peptide receptor 3	protein-coding	0.000000	0.303483	
mm_33254.1	chr4	127168540	127168740	+	1	NA	NA	NA	-564	NM_198618	242667	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	discs, large (Drosophila) homolog-associated protein 3	protein-coding	0.050000	0.656716	
mm_24087.1	chr3	87975682	87975882	+	1	NA	NA	NA	4689	NM_016701	18008	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46	nestin	protein-coding	0.010000	0.582090	
mm_103169.1	chr11	70459541	70459741	-	1	NA	NA	NA	19	NM_001029929	574428	Mm.472771	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.115000	0.726368	
mm_65958.1	chr7	30428636	30428836	-	1	NA	NA	NA	5432	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.015000	0.487562	
mm_128696.1	chr15	62547864	62548064	-	1	NA	NA	NA	-328513	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.005000	0.482587	
mm_79949.1	chr9	66060004	66060204	+	1	NA	NA	NA	-65	NM_011149	19035	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	0.125000	0.716418	
mm_8524.1	chr1	154884252	154884452	-	1	NA	NA	NA	-158432	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.060000	0.611940	
mm_44061.1	chr5	148303106	148303306	+	1	NA	NA	NA	89609	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.040000	0.547264	
mm_125987.1	chr15	76344342	76344542	+	1	NA	NA	NA	919	NM_025567	66445	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	0.040000	0.656716	
mm_144280.1	chr18	11839346	11839546	+	1	NA	NA	NA	-69	NR_045421	621998	Mm.353277	NR_045421		Gm6277	-	predicted gene 6277	ncRNA	0.120000	0.646766	
mm_139006.1	chr17	45570242	45570442	+	1	NA	NA	NA	2919	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.020000	0.472637	-48(GCTCTTATAGAA,+,0.00)
mm_136824.1	chr17	12584089	12584289	+	1	NA	NA	NA	0	NM_013667	20518	Mm.17322	NM_013667	ENSMUSG00000040966	Slc22a2	Oct2|Orct2	solute carrier family 22 (organic cation transporter), member 2	protein-coding	0.025000	0.557214	
mm_99943.1	chr11	111066086	111066286	+	1	NA	NA	NA	22	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.055000	0.587065	
mm_157192.1	chrX	12079173	12079373	-	1	NA	NA	NA	1280	NM_175045	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.120000	0.676617	
mm_53346.1	chr6	129350107	129350307	+	1	NA	NA	NA	-37	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.010000	0.338308	
mm_121513.1	chr14	121998155	121998355	+	1	NA	NA	NA	-33062	NM_183031	321019	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.010000	0.497512	-45(GCCTTTATAACG,+,0.00)
mm_59922.1	chr7	30422310	30422510	+	1	NA	NA	NA	-894	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.090000	0.601990	
mm_54893.1	chr6	46530095	46530295	-	1	NA	NA	NA	-714201	NM_025771	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.040000	0.512438	
mm_8617.1	chr1	156036376	156036576	-	1	NA	NA	NA	4	NM_144791	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.040000	0.661692	
mm_4353.1	chr1	171907232	171907432	+	1	NA	NA	NA	-10130	NM_001347187	30925	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	0.000000	0.512438	-25(CACTATAAAAGG,-,0.00),6(CCTCTTATACTC,+,0.00)
mm_94958.1	chr11	30771669	30771869	+	1	NA	NA	NA	-6	NM_134013	103554	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	0.120000	0.741294	
mm_132834.1	chr16	45535210	45535410	+	1	NA	NA	NA	44	NM_198106	208169	Mm.277437	NM_198106	ENSMUSG00000033210	Slc9c1	Gm610|NHE-10|Slc9a10|sNHE|spermNHE	solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1	protein-coding	0.015000	0.492537	
mm_14869.1	chr2	148799459	148799659	+	1	NA	NA	NA	720	NM_009978	13012	Mm.20435	NM_009978	ENSMUSG00000027442	Cst8	Cres|Cst-rs1	cystatin 8 (cystatin-related epididymal spermatogenic)	protein-coding	0.000000	0.353234	
mm_120538.1	chr14	67234533	67234733	+	1	NA	NA	NA	1341	NM_001276387	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.080000	0.621891	-71(CCTTATCGGGCC,+,0.00)
mm_142003.1	chr17	35199661	35199861	-	1	NA	NA	NA	2246	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.000000	0.407960	
mm_26035.1	chr3	135511769	135511969	+	1	NA	NA	NA	26258	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.040000	0.547264	
mm_132587.1	chr16	38371890	38372090	+	1	NA	NA	NA	9800	NM_022318	64082	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.020000	0.477612	
mm_15284.1	chr2	155276505	155276705	+	1	NA	NA	NA	241	NR_046364	66734	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0.140000	0.761194	
mm_28020.1	chr3	83045872	83046072	-	1	NA	NA	NA	3891	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.005000	0.452736	58(CCATTTAAACCA,+,0.00)
mm_166784.1	chr6	143085487	143085687	-	1	NA	NA	NA	14565	NM_001286578	74741	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.010000	0.447761	
mm_38866.1	chr4	149485078	149485278	-	1	NA	NA	NA	-36	NM_133435	66454	Mm.76062	NM_133435	ENSMUSG00000028992	Nmnat1	2610529L11Rik|5730441G13Rik|D4Cole1e|nmnat	nicotinamide nucleotide adenylyltransferase 1	protein-coding	0.085000	0.661692	
mm_98226.1	chr11	88067589	88067789	+	1	NA	NA	NA	-590	NM_016686	22344	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	0.035000	0.512438	
mm_119050.1	chr14	30635357	30635557	+	1	NA	NA	NA	-9249	NM_011103	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.010000	0.552239	
mm_11018.1	chr2	26604405	26604605	+	1	NA	NA	NA	-88	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.080000	0.736318	
mm_161569.1	chr16	20589436	20589636	+	1	NA	NA	NA	-46	NM_182636	328643	Mm.40539	NM_182636	ENSMUSG00000046613	Vwa5b2	BB182430|EG328644|Gm1738|Gm931	von Willebrand factor A domain containing 5B2	protein-coding	0.035000	0.606965	2(TCCCAGAAAAGG,-,0.00)
mm_60390.1	chr7	44474510	44474710	+	1	NA	NA	NA	4263	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.010000	0.656716	
mm_144584.1	chr18	31937179	31937379	+	1	NA	NA	NA	5772	NM_144862	225341	Mm.24551	NM_144862	ENSMUSG00000024395	Lims2	PINCH2	LIM and senescent cell antigen like domains 2	protein-coding	0.015000	0.522388	
mm_76788.1	chr8	102717149	102717349	-	1	NA	NA	NA	67862	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.000000	0.417910	
mm_3996.1	chr1	164473420	164473620	+	1	NA	NA	NA	-15165	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.010000	0.512438	
mm_108182.1	chr12	76533469	76533669	+	1	NA	NA	NA	9	NM_153804	263406	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0.085000	0.706468	
mm_17028.1	chr2	19553791	19553991	-	1	NA	NA	NA	19	NM_027600	70909	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	0.045000	0.587065	
mm_96482.1	chr11	67684111	67684311	+	1	NA	NA	NA	-11115	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.005000	0.467662	
mm_116698.1	chr13	49790143	49790343	-	1	NA	NA	NA	108113	NM_172015	105148	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	0.005000	0.492537	
mm_158471.1	chrX	141207500	141207700	-	1	NA	NA	NA	-250889	NM_001164177	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	0.010000	0.363184	
mm_104837.1	chr11	99167923	99168123	-	1	NA	NA	NA	-12946	NM_007719	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.020000	0.442786	
mm_119834.1	chr14	54368270	54368470	+	1	NA	NA	NA	7529	NM_026936	69089	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	0.030000	0.482587	
mm_148825.1	chr19	6306784	6306984	+	1	NA	NA	NA	427	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.055000	0.641791	
mm_107237.1	chr12	26478296	26478496	+	1	NA	NA	NA	9181	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.015000	0.472637	
mm_40193.1	chr5	36748509	36748709	+	1	NA	NA	NA	70	NM_133724	117197	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0.140000	0.706468	
mm_169068.1	chr1	32727977	32728177	+	1	NA	NA	NA	-180784	NM_001164286	408191	Mm.479439	NM_001164286	ENSMUSG00000091318	Gm5415	EG408191|Senp14	predicted gene 5415	protein-coding	0.000000	0.333333	-44(GCCTTTAAAAAG,-,0.00),-43(CCTTTAAAAAGA,+,0.00),-42(CTTTAAAAAGAG,+,0.00)
mm_101168.1	chr11	16974020	16974220	-	1	NA	NA	NA	22710	NM_176982	319701	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.010000	0.412935	
mm_157601.1	chrX	53370386	53370586	-	1	NA	NA	NA	73	NM_027409	70380	Mm.491083	NM_027409	ENSMUSG00000023074	Mospd1	1810018L05Rik	motile sperm domain containing 1	protein-coding	0.030000	0.597015	
mm_54556.1	chr6	37212906	37213106	-	1	NA	NA	NA	86970	NM_001081206	320127	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.015000	0.572139	
mm_97977.1	chr11	83865526	83865726	+	1	NA	NA	NA	12666	NM_001291269	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.015000	0.567164	
mm_13326.1	chr2	102783066	102783266	+	1	NA	NA	NA	76728	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.015000	0.492537	
mm_53792.1	chr6	146657114	146657314	+	1	NA	NA	NA	-4	NR_046277	74925	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	0.005000	0.472637	
mm_134340.1	chr16	16542099	16542299	-	1	NA	NA	NA	-14788	NM_001301818	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.020000	0.427861	
mm_3393.1	chr1	142612133	142612333	+	1	NA	NA	NA	-1028464	NM_020025	26878	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.065000	0.527363	-33(GGTTATAAAAGC,-,0.00)
mm_72599.1	chr8	84414925	84415125	+	1	NA	NA	NA	-339	NM_001252060	12286	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.040000	0.447761	
mm_7020.1	chr1	86666592	86666792	-	1	NA	NA	NA	3881	NM_010933	18159	Mm.12802	NM_010933	ENSMUSG00000026241	Nppc	CNP|lbab	natriuretic peptide type C	protein-coding	0.005000	0.407960	
mm_19369.1	chr2	91182939	91183139	-	1	NA	NA	NA	8	NM_001177719	228355	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0.090000	0.666667	
mm_53788.1	chr6	146633756	146633956	+	1	NA	NA	NA	736	NM_026281	67623	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	0.040000	0.487562	
mm_152452.1	chr19	10832081	10832281	-	1	NA	NA	NA	-2123	NM_009852	12511	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.010000	0.547264	
mm_5938.1	chr1	55764545	55764745	-	1	NA	NA	NA	-166596	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0.000000	0.393035	
mm_102922.1	chr11	69600467	69600667	-	1	NA	NA	NA	5393	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.005000	0.457711	
mm_63725.1	chr7	130861721	130861921	+	1	NA	NA	NA	-3903	NM_001346515	101476	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.025000	0.502488	
mm_111769.1	chr12	104032782	104032982	-	1	NA	NA	NA	11561	NM_026535	68054	Mm.20286	NM_026535	ENSMUSG00000041567	Serpina12	4632419J12Rik	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12	protein-coding	0.015000	0.547264	
mm_166551.1	chr6	41312187	41312387	+	1	NA	NA	NA	2423	NM_001003405	103964	Mm.333022	NM_001003405	ENSMUSG00000036938	Try5	1810049H19Rik|Tc|Tesp4	trypsin 5	protein-coding	0.005000	0.537313	
mm_121621.1	chr14	8299547	8299747	-	1	NA	NA	NA	10129	NM_183187	268709	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0.030000	0.542289	
mm_52941.1	chr6	122952330	122952530	+	1	NA	NA	NA	-85	NM_001204241	73149	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.020000	0.542289	
mm_141458.1	chr17	30563717	30563917	-	1	NA	NA	NA	12470	NM_172618	224671	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0.005000	0.363184	35(CTGTATATAAAG,-,0.00)
mm_138496.1	chr17	35200641	35200841	+	1	NA	NA	NA	1266	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.025000	0.557214	14(GTCTCTAAGAGC,-,0.00)
mm_42041.1	chr5	108405956	108406156	+	1	NA	NA	NA	17683	NM_008806	18587	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0.015000	0.417910	
mm_37245.1	chr4	118179555	118179755	-	1	NA	NA	NA	388	NM_172382	230674	Mm.234234	NM_172382	ENSMUSG00000033326	Kdm4a	D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677	lysine (K)-specific demethylase 4A	protein-coding	0.050000	0.611940	
mm_102177.1	chr11	54028004	54028204	-	1	NA	NA	NA	0	NM_019687	30805	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	0.085000	0.656716	
mm_128626.1	chr15	59044435	59044635	-	1	NA	NA	NA	37491	NM_001146180	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.000000	0.442786	
mm_162231.1	chrX	150655364	150655564	-	1	NA	NA	NA	1972	NM_019548	56191	Mm.3597	NM_019548	ENSMUSG00000025272	Tro	AA409408|Maged3|Maged3l|Tnn|Trol|magphinin	trophinin	protein-coding	0.015000	0.462687	
mm_157376.1	chrX	37878718	37878918	-	1	NA	NA	NA	126	NM_001004193	434768	Mm.336025	NM_001004193	ENSMUSG00000064137	Rhox8	Tox	reproductive homeobox 8	protein-coding	0.015000	0.467662	
mm_95691.1	chr11	54314843	54315043	+	1	NA	NA	NA	40	NM_001033599	216739	Mm.267478	NM_144823	ENSMUSG00000020333	Acsl6	A330035H04Rik|AW050338|Facl6|LACS|Lacsl|mKIAA0837	acyl-CoA synthetase long-chain family member 6	protein-coding	0.005000	0.601990	
mm_145705.1	chr18	62657269	62657469	+	1	NA	NA	NA	-61105	NM_001001803	408198	Mm.478742	NM_001001803	ENSMUSG00000060201	Spink7	EG408198|Ecg2	serine peptidase inhibitor, Kazal type 7 (putative)	protein-coding	0.010000	0.442786	
mm_168783.1	chr12	18678994	18679194	-	1	NA	NA	NA	164584	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.005000	0.407960	
mm_2560.1	chr1	115684636	115684836	+	1	NA	NA	NA	-401	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.050000	0.567164	-87(ACTTTTATGGAC,+,0.00),-33(GCGCCTATAAGG,-,0.00),-31(GCCTATAAGGAG,+,0.00)
mm_81850.1	chr9	118606619	118606819	+	1	NA	NA	NA	10	NM_133721	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.150000	0.796020	
mm_70260.1	chr8	3516825	3517025	+	1	NA	NA	NA	1541	NM_015801	50767	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0.045000	0.562189	
mm_33062.1	chr4	123233718	123233918	+	1	NA	NA	NA	262	NM_013905	56198	Mm.103615	NM_013905	ENSMUSG00000032744	Heyl	Hey3|Hrt3|bHLHb33|hesr3	hairy/enhancer-of-split related with YRPW motif-like	protein-coding	0.100000	0.756219	
mm_37261.1	chr4	118437243	118437443	-	1	NA	NA	NA	0	NM_023223	107995	Mm.261764	NM_023223	ENSMUSG00000006398	Cdc20	2310042N09Rik|C87100|p55CDC	cell division cycle 20	protein-coding	0.090000	0.572139	
mm_112653.1	chr13	16026322	16026522	+	1	NA	NA	NA	14571	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.020000	0.527363	17(GGGCTTAAAGGG,-,0.00),19(GCTTAAAGGGGG,+,0.00)
mm_62041.1	chr7	92235001	92235201	+	1	NA	NA	NA	131	NM_001243047	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.030000	0.517413	
mm_9928.1	chr1	189883888	189884088	-	1	NA	NA	NA	38300	NM_026796	226830	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.035000	0.621891	
mm_155575.1	chrX	77511146	77511346	+	1	NA	NA	NA	19	NM_020601	21372	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	0.140000	0.741294	
mm_39369.1	chr5	10233857	10234057	+	1	NA	NA	NA	-508605	NM_181850	108069	Mm.318966	NM_181850	ENSMUSG00000003974	Grm3	0710001G23Rik|Gprc1c|mGlu3|mGluR3	glutamate receptor, metabotropic 3	protein-coding	0.005000	0.507463	
mm_39664.1	chr5	25222750	25222950	+	1	NA	NA	NA	-43	NM_144908	231050	Mm.21814	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.150000	0.726368	
mm_35445.1	chr4	40239620	40239820	-	1	NA	NA	NA	105	NM_172689	230073	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.055000	0.552239	
mm_45405.1	chr5	66299237	66299437	-	1	NA	NA	NA	38328	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.005000	0.407960	-65(TTCCATTAAAGC,-,0.00)
mm_82514.1	chr9	20521489	20521689	-	1	NA	NA	NA	-170	NM_001082485	77519	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	0.085000	0.626866	
mm_163233.1	chr11	103621315	103621515	-	1	NA	NA	NA	-6676	NM_001033434	380730	Mm.380214	NM_001033434	ENSMUSG00000034239	Gm884	LRRC37	predicted gene 884	protein-coding	0.030000	0.537313	
mm_50325.1	chr6	48395570	48395770	+	1	NA	NA	NA	84	NM_001347153	77827	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	0.105000	0.696517	
mm_46554.1	chr5	106680220	106680420	-	1	NA	NA	NA	16510	NM_026856	52397	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.010000	0.422886	
mm_153645.1	chr19	44246474	44246674	-	1	NA	NA	NA	43286	NM_024450	30049	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	0.030000	0.467662	
mm_38269.1	chr4	136880668	136880868	-	1	NA	NA	NA	5409	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.035000	0.626866	
mm_89353.1	chr10	88201002	88201202	+	1	NA	NA	NA	5	NM_027487	67282	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	0.050000	0.572139	
mm_81327.1	chr9	108507963	108508163	+	1	NA	NA	NA	58	NM_133794	97541	Mm.272427	NM_133794	ENSMUSG00000032604	Qars	1110018N24Rik|1200016L19Rik|C80286|GLNRS	glutaminyl-tRNA synthetase	protein-coding	0.060000	0.537313	
mm_128761.1	chr15	65912328	65912528	-	1	NA	NA	NA	-141	NM_010953	18256	Mm.41776	NM_010953	ENSMUSG00000015001	Oc90	Ocn-95|PLA2L|Pla2ll|oc95	otoconin 90	protein-coding	0.005000	0.497512	
mm_103323.1	chr11	73326375	73326575	-	1	NA	NA	NA	-1838	NM_023113	11484	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	0.010000	0.437811	
mm_37977.1	chr4	133601396	133601596	-	1	NA	NA	NA	672	NM_018754	55948	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	0.055000	0.597015	
mm_4558.1	chr1	177445566	177445766	+	1	NA	NA	NA	-155	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.010000	0.467662	-32(ATGTTTATAAGC,-,0.00)
mm_118871.1	chr14	25855684	25855884	+	1	NA	NA	NA	13629	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.010000	0.457711	19(CCTTTTAAACAT,+,0.00),79(TTTTTTAAAGTC,+,0.00)
mm_134255.1	chr16	13730395	13730595	-	1	NA	NA	NA	-11	NM_011987	26565	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	0.025000	0.597015	
mm_12567.1	chr2	72979365	72979565	+	1	NA	NA	NA	33	NR_045269	100503849	Mm.389285	NM_183265		Sp3os	1700011J10Rik	trans-acting transcription factor 3, opposite strand	ncRNA	0.140000	0.776119	
mm_16899.1	chr2	13283169	13283369	-	1	NA	NA	NA	-11854	NM_009105	20163	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.035000	0.577114	
mm_140618.1	chr17	11385278	11385478	-	1	NA	NA	NA	497811	NR_045808	52027	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	0.020000	0.537313	
mm_137543.1	chr17	27556751	27556951	+	1	NA	NA	NA	198	NM_001166477	111241	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1-rs1	ENSMUSG00000041059|Hmgi-rs1	high mobility group AT-hook I, related sequence 1	protein-coding	0.095000	0.651741	
mm_156312.1	chrX	136927225	136927425	+	1	NA	NA	NA	0	NM_027067	69389	Mm.302721	NM_027067	ENSMUSG00000048155	H2bfm	1700014N06Rik|H2bfw|H2bl2	H2B histone family, member M	protein-coding	0.050000	0.467662	
mm_134822.1	chr16	25965659	25965859	-	1	NA	NA	NA	140025	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.040000	0.527363	
mm_43241.1	chr5	130079331	130079531	+	1	NA	NA	NA	61	NM_001130476	22021	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0.155000	0.761194	
mm_18823.1	chr2	74659696	74659896	-	1	NA	NA	NA	-239	NM_007967	14029	Mm.25365	NM_007967	ENSMUSG00000001815	Evx2	Evx-2	even-skipped homeobox 2	protein-coding	0.045000	0.517413	89(GCTTATAAACCT,+,0.00)
mm_106564.1	chr11	120633500	120633700	-	1	NA	NA	NA	-53	NM_010756	17134	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.130000	0.691542	
mm_56033.1	chr6	86648941	86649141	-	1	NA	NA	NA	20118	NM_010751	17119	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.015000	0.373134	
mm_164647.1	chr17	35534011	35534211	+	1	NA	NA	NA	910	NM_020576	57390	Mm.34201	NM_020576	ENSMUSG00000024409	Psors1c2	AI448740|Pcg|SPR1	psoriasis susceptibility 1 candidate 2 (human)	protein-coding	0.010000	0.611940	
mm_64896.1	chr7	15949990	15950190	-	1	NA	NA	NA	-3982	NM_133831	68077	Mm.277634	NM_133831	ENSMUSG00000041560	Gltscr2	5330430H08Rik|9430097C02Rik|AU041936|AW536441|PICT-1|R74911	glioma tumor suppressor candidate region gene 2	protein-coding	0.020000	0.572139	
mm_45522.1	chr5	72617287	72617487	-	1	NA	NA	NA	25365	NM_007723	12788	Mm.436652	NM_007723	ENSMUSG00000067220	Cnga1	Cncg	cyclic nucleotide gated channel alpha 1	protein-coding	0.005000	0.472637	
mm_35586.1	chr4	42874084	42874284	-	1	NA	NA	NA	19	NM_177785	277773	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	0.010000	0.452736	
mm_4236.1	chr1	171380055	171380255	+	1	NA	NA	NA	-8805	NM_001005508	226652	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	0.035000	0.606965	
mm_120461.1	chr14	65970565	65970765	+	1	NA	NA	NA	2182	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.010000	0.527363	-83(GCCTATTAATGA,-,0.00),44(GCCCAGATAAGC,-,0.00)
mm_147655.1	chr18	60525961	60526161	-	1	NA	NA	NA	-160	NM_026302	67665	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	0.060000	0.577114	
mm_91170.1	chr10	20719929	20720129	-	1	NA	NA	NA	5049	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.025000	0.462687	
mm_129420.1	chr15	78405269	78405469	-	1	NA	NA	NA	490	NM_009437	22117	Mm.15312	NM_009437	ENSMUSG00000044986	Tst	Rhodanese	thiosulfate sulfurtransferase, mitochondrial	protein-coding	0.030000	0.577114	52(CAGTCTAAAAGG,-,0.00)
mm_80879.1	chr9	98986350	98986550	+	1	NA	NA	NA	77	NM_011810	23873	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0.140000	0.751244	
mm_17116.1	chr2	24475021	24475221	-	1	NA	NA	NA	478	NM_011040	18510	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0.075000	0.646766	-73(GGGTCTATATGC,-,0.00)
mm_95824.1	chr11	55401851	55402051	+	1	NA	NA	NA	18129	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.010000	0.562189	
mm_124203.1	chr14	98169726	98169926	-	1	NA	NA	NA	-61	NM_007826	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.035000	0.492537	
mm_69668.1	chr7	139983284	139983484	-	1	NA	NA	NA	3490	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.000000	0.522388	
mm_140373.1	chr17	86980836	86981036	+	1	NA	NA	NA	17825	NM_145491	104215	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.015000	0.388060	
mm_152120.1	chr19	6987428	6987628	-	1	NA	NA	NA	123	NM_001185164	22340	Mm.15607	NM_011697	ENSMUSG00000024962	Vegfb	VEGF-B|Vrf	vascular endothelial growth factor B	protein-coding	0.135000	0.810945	
mm_7966.1	chr1	133930082	133930282	-	1	NA	NA	NA	-8781	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.010000	0.512438	
mm_87126.1	chr10	33850902	33851102	+	1	NA	NA	NA	-6720	NM_020565	57430	Mm.6590	NM_020565	ENSMUSG00000069668	Sult3a1	ST3A1|Sult-x2|Sultx2	sulfotransferase family 3A, member 1	protein-coding	0.000000	0.422886	
mm_64281.1	chr7	141818541	141818741	+	1	NA	NA	NA	-20431	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.010000	0.562189	
mm_62858.1	chr7	114570875	114571075	+	1	NA	NA	NA	-8003	NM_177382	244209	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0.005000	0.427861	
mm_139021.1	chr17	46122662	46122862	+	1	NA	NA	NA	11758	NM_026768	68565	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	0.015000	0.527363	
mm_132697.1	chr16	43362919	43363119	+	1	NA	NA	NA	57177	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.015000	0.552239	
mm_9252.1	chr1	171531040	171531240	-	1	NA	NA	NA	4154	NM_010584	16429	Mm.247426	NM_010584	ENSMUSG00000038209	Itln1	IntL|Itln|Itln2|Itln3|Itln5|Itlna|Lfr	intelectin 1 (galactofuranose binding)	protein-coding	0.010000	0.557214	
mm_12969.1	chr2	90738366	90738566	+	1	NA	NA	NA	-6904	NM_018828	55935	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0.005000	0.487562	
mm_52589.1	chr6	116669292	116669492	+	1	NA	NA	NA	4444	NM_178045	213391	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.000000	0.527363	-34(GCCCAGATAAGG,-,0.00)
mm_86848.1	chr10	21593032	21593232	+	1	NA	NA	NA	-13	NR_027968	67692	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.060000	0.601990	
mm_135326.1	chr16	38800123	38800323	-	1	NA	NA	NA	-20	NM_178924	22268	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0.035000	0.606965	-12(GGGTAGAAAAGC,-,0.00)
mm_129913.1	chr15	84131970	84132170	-	1	NA	NA	NA	-8895	NM_029427	75772	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0.025000	0.582090	
mm_68283.1	chr7	105600013	105600213	-	1	NA	NA	NA	3	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.005000	0.537313	
mm_60181.1	chr7	43077960	43078160	+	1	NA	NA	NA	59262	NM_001105061	668612	Mm.469896	NM_001105061	ENSMUSG00000091528	Gm9268	EG668612|Vmn2r64	predicted gene 9268	protein-coding	0.025000	0.547264	
mm_91761.1	chr10	51486220	51486420	-	1	NA	NA	NA	-4578	NM_001291894	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.005000	0.273632	
mm_102830.1	chr11	69098509	69098709	-	1	NA	NA	NA	-347	NM_011065	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.010000	0.502488	-60(CCTTTTCAGGGA,+,0.00)
mm_56714.1	chr6	115317010	115317210	-	1	NA	NA	NA	-43841	NM_001127330	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.035000	0.427861	
mm_8633.1	chr1	156340856	156341056	-	1	NA	NA	NA	30237	NM_130456	170484	Mm.289099	NM_130456	ENSMUSG00000026602	Nphs2	PDCN|SRN1	nephrosis 2, podocin	protein-coding	0.015000	0.422886	
mm_10581.1	chr2	18156106	18156306	+	1	NA	NA	NA	91621	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.010000	0.427861	-85(GCTTTAATAAGG,+,0.00),-74(GGTTCTTAAAGG,-,0.00),-73(GTTCTTAAAGGC,+,0.00),11(GTCTAGAAAGGG,-,0.00)
mm_111385.1	chr12	87459367	87459567	-	1	NA	NA	NA	12832	NM_025507	66354	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	0.025000	0.442786	
mm_163550.1	chr13	23571012	23571212	-	1	NA	NA	NA	108	NM_178187	319166	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	0.070000	0.547264	
mm_170439.1	chr18	80025701	80025901	+	1	NA	NA	NA	-21094	NM_053117	93737	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0.025000	0.547264	
mm_143999.1	chr17	88053578	88053778	-	1	NA	NA	NA	11607	NM_001081034	225055	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.015000	0.407960	
mm_129338.1	chr15	77836202	77836402	-	1	NA	NA	NA	5873	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.015000	0.597015	
mm_92427.1	chr10	77089370	77089570	-	1	NA	NA	NA	24235	NM_001109991	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.020000	0.537313	
mm_67035.1	chr7	66733383	66733583	-	1	NA	NA	NA	-10021	NM_001164201	545975	Mm.380104	NM_001164201	ENSMUSG00000030510	Cers3	4930550L11Rik|Gm488|Lass3|T3L	ceramide synthase 3	protein-coding	0.035000	0.567164	
mm_7904.1	chr1	133660862	133661062	-	1	NA	NA	NA	-77	NM_001166552	667118	Mm.245357	NM_001166552	ENSMUSG00000094410	Zbed6	Gm8466|MGR	zinc finger, BED type containing 6	protein-coding	0.060000	0.661692	
mm_101312.1	chr11	22779218	22779418	-	1	NA	NA	NA	80417	NM_016888	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.005000	0.412935	-27(CACTAGAAAAGC,-,0.00),74(GTCTTTTTAAAC,-,0.00),76(CTTTTTAAACGC,+,0.00)
mm_57815.1	chr6	129462544	129462744	-	1	NA	NA	NA	10135	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.393035	-13(GACTTTAAAAGC,-,0.00),-12(ACTTTAAAAGCC,+,0.00)
mm_140219.1	chr17	83847939	83848139	+	1	NA	NA	NA	-1249	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.005000	0.597015	
mm_149428.1	chr19	11469295	11469495	+	1	NA	NA	NA	27	NM_028595	73656	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.010000	0.472637	
mm_135606.1	chr16	52249472	52249672	-	1	NA	NA	NA	203509	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.338308	
mm_130158.1	chr15	91191679	91191879	-	1	NA	NA	NA	28	NM_011994	26874	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.035000	0.587065	
mm_34641.1	chr4	150661835	150662035	+	1	NA	NA	NA	-9761	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.055000	0.577114	
mm_157336.1	chrX	36645287	36645487	-	1	NA	NA	NA	27	NM_001081956	338351	Mm.116704	NM_001081956	ENSMUSG00000059708	Akap17b	AA407619|AKAP-17B|B230333C21Rik|C230056F04Rik|PRKA17B|Sfrs17b|Srsf17b|Talia	A kinase (PRKA) anchor protein 17B	protein-coding	0.045000	0.641791	
mm_155267.1	chrX	58911380	58911580	+	1	NA	NA	NA	19	NM_023774	75352	Mm.60906	NM_023774	ENSMUSG00000046180	4930550L24Rik	mage-k1	RIKEN cDNA 4930550L24 gene	protein-coding	0.045000	0.487562	
mm_84403.1	chr9	65555075	65555275	-	1	NA	NA	NA	24912	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.015000	0.547264	
mm_165285.1	chr2	84383881	84384081	-	1	NA	NA	NA	41285	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.005000	0.482587	
mm_4585.1	chr1	178319033	178319233	+	1	NA	NA	NA	-20	NM_025511	66359	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0.105000	0.721393	
mm_152089.1	chr19	6907671	6907871	-	1	NA	NA	NA	1874	NM_012021	54683	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.005000	0.487562	
mm_154692.1	chrX	8049135	8049335	+	1	NA	NA	NA	25078	NM_001290716	20937	Mm.9244	NM_011514	ENSMUSG00000039231	Suv39h1	AI852103|AL022883|DXHXS7466e|H3-K9-HMTase 1|KMT1A|mIS6	suppressor of variegation 3-9 homolog 1 (Drosophila)	protein-coding	0.015000	0.492537	-35(CAGTATAAAAAG,-,0.00),13(GCTTATAGAGCT,+,0.00)
mm_116232.1	chr13	33559586	33559786	-	1	NA	NA	NA	9183	NR_131140	619715	Mm.390575	NR_131140		Gm6093	EG619715	predicted gene 6093	ncRNA	0.010000	0.422886	-30(AGGTATAAAAAG,-,0.00)
mm_115471.1	chr13	119466295	119466495	+	1	NA	NA	NA	3636	NM_026127	67392	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	0.015000	0.373134	
mm_121903.1	chr14	21889717	21889917	-	1	NA	NA	NA	-40907	NM_026965	69156	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0.015000	0.442786	
mm_69930.1	chr7	142029110	142029310	-	1	NA	NA	NA	31643	NM_001347560	101513	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	0.010000	0.407960	69(GCCTTTTTAAAC,-,0.00),71(CTTTTTAAACGT,+,0.00)
mm_144590.1	chr18	32068785	32068985	+	1	NA	NA	NA	1151	NM_173441	73473	Mm.66853	NM_173441	ENSMUSG00000024384	Iws1	1700069O15Rik|3000008H23|AL117927|AW214353	IWS1, SUPT6 interacting protein	protein-coding	0.010000	0.432836	
mm_26104.1	chr3	137340986	137341186	+	1	NA	NA	NA	8	NM_016885	59308	Mm.27343	NM_016885	ENSMUSG00000054690	Emcn	0610012K22Rik|AI315669|Muc14	endomucin	protein-coding	0.015000	0.462687	
mm_49370.1	chr6	23947674	23947874	+	1	NA	NA	NA	22286	NM_207022	387347	Mm.377909	NM_207022	ENSMUSG00000043865	Tas2r118	Gm465|T2R18|Tas2r16|Tas2r18|mGR18|mt2r40	taste receptor, type 2, member 118	protein-coding	0.010000	0.283582	
mm_12945.1	chr2	87481404	87481604	+	1	NA	NA	NA	10914	NM_178250	347712	Mm.6018	NM_178250	ENSMUSG00000025839	Pramel7	AA675346|C81180	preferentially expressed antigen in melanoma like 7	protein-coding	0.010000	0.467662	
mm_149891.1	chr19	25406869	25407069	+	1	NA	NA	NA	-98737	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.060000	0.701493	
mm_110433.1	chr12	46819384	46819584	-	1	NA	NA	NA	-709	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.135000	0.746269	
mm_33335.1	chr4	129189810	129190010	+	1	NA	NA	NA	115	NM_134151	107271	Mm.145488	NM_134151	ENSMUSG00000028811	Yars	AL024047|AU018965	tyrosyl-tRNA synthetase	protein-coding	0.110000	0.641791	
mm_36717.1	chr4	98699023	98699223	-	1	NA	NA	NA	-27631	NM_001081202	381591	Mm.34340	NM_001081202	ENSMUSG00000087166	L1td1	AA546746|AB211064|D76865|ECAT11	LINE-1 type transposase domain containing 1	protein-coding	0.005000	0.522388	
mm_106325.1	chr11	118310540	118310740	-	1	NA	NA	NA	-20396	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.010000	0.527363	
mm_140912.1	chr17	24168699	24168899	-	1	NA	NA	NA	596	NR_037854	100039636	Mm.30155	NR_037854		Atp6v0c-ps2	Atp6l-ps2|Gm15487	ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2	pseudo	0.055000	0.666667	53(GCTTTTATGGCG,+,0.00)
mm_100195.1	chr11	116752260	116752460	+	1	NA	NA	NA	193	NR_003364	193217	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	0.005000	0.437811	
mm_164915.1	chr18	75360084	75360284	-	1	NA	NA	NA	-7181	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.020000	0.537313	
mm_137581.1	chr17	28007387	28007587	+	1	NA	NA	NA	73097	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.065000	0.587065	-30(GCCTTTATGGGA,+,0.00),70(CCTTATATAGCA,+,0.00)
mm_161357.1	chr14	56042015	56042215	+	1	NA	NA	NA	-8	NM_008571	17225	Mm.4409	NM_008571	ENSMUSG00000022226	Mcpt2	MMCP-2|Mcp-2	mast cell protease 2	protein-coding	0.000000	0.492537	-27(ATCTATAAAAGC,-,0.00)
mm_144903.1	chr18	37333758	37333958	+	1	NA	NA	NA	-170	NM_053131	93877	Mm.59009	NM_053131	ENSMUSG00000051678	Pcdhb6	Pcdhb5B|PcdhbF	protocadherin beta 6	protein-coding	0.030000	0.477612	
mm_94299.1	chr11	4121393	4121593	+	1	NA	NA	NA	-2764	NM_144520	67815	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	0.015000	0.517413	
mm_71392.1	chr8	46162170	46162370	+	1	NA	NA	NA	-7286	NM_025747	66756	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430|mKIAA1430	cilia and flagella associated protein 97	protein-coding	0.005000	0.472637	
mm_157122.1	chrX	9445605	9445805	-	1	NA	NA	NA	23619	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.328358	
mm_66071.1	chr7	30878012	30878212	-	1	NA	NA	NA	916	NM_009845	12483	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	0.015000	0.502488	
mm_105541.1	chr11	106313623	106313823	-	1	NA	NA	NA	839	NM_008339	15985	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	0.010000	0.552239	
mm_152784.1	chr19	21440796	21440996	-	1	NA	NA	NA	31765	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.015000	0.457711	-30(CCTTAAATGTCC,+,0.00)
mm_60660.1	chr7	44943143	44943343	+	1	NA	NA	NA	3	NM_011651	22116	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	0.030000	0.636816	
mm_75388.1	chr8	45555634	45555834	-	1	NA	NA	NA	47946	NM_001205219	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.015000	0.517413	
mm_38100.1	chr4	134287137	134287337	-	1	NA	NA	NA	16	NM_001163794	230809	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	0.145000	0.756219	
mm_142899.1	chr17	51956457	51956657	-	1	NA	NA	NA	73830	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.040000	0.507463	
mm_47247.1	chr5	121572020	121572220	-	1	NA	NA	NA	21704	NM_009656	11669	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.060000	0.562189	
mm_90305.1	chr10	126978809	126979009	+	1	NA	NA	NA	192	NM_001113470	52468	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0.080000	0.666667	
mm_108866.1	chr12	99047063	99047263	+	1	NA	NA	NA	115645	NR_038130	67639	Mm.87374	NR_038130		4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.020000	0.542289	
mm_84973.1	chr9	85323655	85323855	-	1	NA	NA	NA	3369	NM_001160378	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.045000	0.407960	
mm_33292.1	chr4	128935906	128936106	+	1	NA	NA	NA	26449	NM_172875	242669	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.005000	0.507463	
mm_57898.1	chr6	131383687	131383887	-	1	NA	NA	NA	4663	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.020000	0.492537	
mm_74010.1	chr8	121118229	121118429	+	1	NA	NA	NA	2158	NM_013519	14234	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	0.025000	0.492537	
mm_87249.1	chr10	41343117	41343317	+	1	NA	NA	NA	-39976	NM_133999	103199	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0.030000	0.482587	
mm_88050.1	chr10	67539888	67540088	+	1	NA	NA	NA	2058	NM_001347458	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.025000	0.606965	
mm_90791.1	chr10	7064137	7064337	-	1	NA	NA	NA	-41052	NM_001033391	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.015000	0.477612	
mm_21565.1	chr2	164190508	164190708	-	1	NA	NA	NA	-50	NM_138684	192200	Mm.6433	NM_138684	ENSMUSG00000042845	Wfdc12	Swam2|WAP2	WAP four-disulfide core domain 12	protein-coding	0.015000	0.616915	
mm_110922.1	chr12	76369061	76369261	-	1	NA	NA	NA	303	NM_001172104	109929	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0.145000	0.761194	
mm_34153.1	chr4	139380571	139380771	+	1	NA	NA	NA	12	NM_001160319	69116	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0.160000	0.761194	
mm_68247.1	chr7	105565382	105565582	-	1	NA	NA	NA	3295	NM_001310600	11785	Mm.38469	NM_009685	ENSMUSG00000037032	Apbb1	Fe65|Rir	amyloid beta (A4) precursor protein-binding, family B, member 1	protein-coding	0.015000	0.582090	
mm_48351.1	chr5	139325672	139325872	-	1	NA	NA	NA	-308	NM_172723	231821	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.035000	0.552239	
mm_30606.1	chr4	6394784	6394984	+	1	NA	NA	NA	29204	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.005000	0.407960	
mm_155477.1	chrX	73673032	73673232	+	1	NA	NA	NA	-1	NM_001142810	102857	Mm.274553	NM_133987	ENSMUSG00000019558	Slc6a8	AA589632|CRT|CRTR|CT1|CTR5|Creat	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	protein-coding	0.090000	0.681592	
mm_149681.1	chr19	20492567	20492767	+	1	NA	NA	NA	-48	NR_015502	320092	Mm.482524	NR_015502		E030003E18Rik	1700127G21Rik	RIKEN cDNA E030003E18 gene	ncRNA	0.000000	0.507463	
mm_143719.1	chr17	81375340	81375540	-	1	NA	NA	NA	-310355	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.000000	0.452736	
mm_5725.1	chr1	44102373	44102573	-	1	NA	NA	NA	-85	NM_029368	75623	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0.150000	0.726368	
mm_49112.1	chr6	8504020	8504220	+	1	NA	NA	NA	5041	NR_040452	320312	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.015000	0.422886	
mm_122176.1	chr14	31545723	31545923	-	1	NA	NA	NA	31560	NM_009937	382864	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.010000	0.407960	
mm_31681.1	chr4	62297912	62298112	+	1	NA	NA	NA	6465	NM_001290518	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.000000	0.447761	
mm_31370.1	chr4	47353148	47353348	+	1	NA	NA	NA	26	NM_009370	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.135000	0.766169	
mm_59393.1	chr7	26764397	26764597	+	1	NA	NA	NA	7355	NM_007814	13090	Mm.14098	NM_007814	ENSMUSG00000066704	Cyp2b19	CYPIIB19	cytochrome P450, family 2, subfamily b, polypeptide 19	protein-coding	0.005000	0.467662	
mm_140272.1	chr17	84683105	84683305	+	1	NA	NA	NA	84	NM_026180	67470	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP-binding cassette, sub-family G (WHITE), member 8	protein-coding	0.005000	0.562189	
mm_105766.1	chr11	109611243	109611443	-	1	NA	NA	NA	46	NM_145940	52639	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0.120000	0.751244	
mm_133678.1	chr16	92292356	92292556	+	1	NA	NA	NA	67	NM_134110	246133	Mm.156736	NM_134110	ENSMUSG00000039672	Kcne2	2200002I16Rik|AW048273|MiRP1	potassium voltage-gated channel, Isk-related subfamily, gene 2	protein-coding	0.005000	0.452736	86(CTTTTTAAAAGG,+,0.00),86(CTTTTTAAAAGG,-,0.00)
mm_73376.1	chr8	105636394	105636594	+	1	NA	NA	NA	-44	NM_181322	13018	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0.125000	0.741294	
mm_11650.1	chr2	34961636	34961836	+	1	NA	NA	NA	36	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.025000	0.577114	
mm_72330.1	chr8	79028108	79028308	+	1	NA	NA	NA	-229	NM_001294279	622675	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.095000	0.616915	
mm_10584.1	chr2	18172608	18172808	+	1	NA	NA	NA	108123	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.005000	0.278607	
mm_49596.1	chr6	30670104	30670304	+	1	NA	NA	NA	23545	NM_031998	83922	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	0.020000	0.512438	
mm_44641.1	chr5	28123958	28124158	-	1	NA	NA	NA	-41638	NM_010134	13799	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	0.025000	0.542289	
mm_39756.1	chr5	29735878	29736078	+	1	NA	NA	NA	-42	NR_028426	332993	Mm.473746	NR_028426		Gm5129	EG332993|ENSMUSG00000053121	predicted gene 5129	ncRNA	0.145000	0.676617	
mm_67969.1	chr7	100608201	100608401	-	1	NA	NA	NA	-305	NR_003559	52443	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e	mitochondrial ribosomal protein L48	protein-coding	0.105000	0.706468	
mm_6852.1	chr1	84253488	84253688	-	1	NA	NA	NA	31057	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.000000	0.388060	
mm_17040.1	chr2	20671648	20671848	-	1	NA	NA	NA	152235	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.020000	0.527363	
mm_70830.1	chr8	23143159	23143359	+	1	NA	NA	NA	-597	NR_037293	100526510		NR_037293	ENSMUSG00000106471	Mir3107	mir-486b|mmu-mir-3107|mmu-mir-486b	microRNA 3107	ncRNA	0.010000	0.507463	
mm_64375.1	chr7	142442881	142443081	+	1	NA	NA	NA	513	NM_009405	21953	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	0.005000	0.572139	
mm_89412.1	chr10	90829550	90829750	+	1	NA	NA	NA	-4	NM_001347054	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.180000	0.781095	
mm_124427.1	chr14	118236129	118236329	-	1	NA	NA	NA	-3	NR_131969	105245869	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	0.065000	0.621891	
mm_23955.1	chr3	84918170	84918370	+	1	NA	NA	NA	-33941	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.010000	0.383085	
mm_111939.1	chr12	108893409	108893609	-	1	NA	NA	NA	-298	NM_011710	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.025000	0.552239	
mm_55703.1	chr6	72957478	72957678	-	1	NA	NA	NA	654	NM_001039392	19240	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.040000	0.577114	
mm_20233.1	chr2	125859110	125859310	-	1	NA	NA	NA	101	NM_175154	69976	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	0.065000	0.537313	
mm_164982.1	chr19	10001609	10001809	+	1	NA	NA	NA	40	NM_001347429	74760	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	0.005000	0.587065	
mm_38190.1	chr4	135337971	135338171	-	1	NA	NA	NA	15143	NM_016799	51796	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.040000	0.502488	
mm_108816.1	chr12	95695093	95695293	+	1	NA	NA	NA	2967	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.050000	0.616915	
mm_106953.1	chr12	8791812	8792012	+	1	NA	NA	NA	20516	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.010000	0.587065	
mm_81752.1	chr9	113955946	113956146	+	1	NA	NA	NA	25112	NM_013699	22221	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0.025000	0.502488	
mm_93756.1	chr10	120174250	120174450	-	1	NA	NA	NA	27187	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.040000	0.507463	
mm_27813.1	chr3	78594418	78594618	-	1	NA	NA	NA	550369	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.015000	0.482587	
mm_118908.1	chr14	26656078	26656278	+	1	NA	NA	NA	13430	NR_106132	102465773		NR_106132	ENSMUSG00000098751	Mir7672	Gm27314|mmu-mir-7672	microRNA 7672	ncRNA	0.005000	0.368159	
mm_8785.1	chr1	161251043	161251243	-	1	NA	NA	NA	67	NR_130150	11758	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	0.085000	0.696517	
mm_108638.1	chr12	85759424	85759624	+	1	NA	NA	NA	12985	NM_145447	217721	Mm.301076	NM_145447	ENSMUSG00000034258	Mfsd7c	CCT|Flvcr2	major facilitator superfamily domain containing 7C	protein-coding	0.005000	0.427861	
mm_68095.1	chr7	101933756	101933956	-	1	NA	NA	NA	1	NM_027053	69358	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0.080000	0.577114	
mm_160707.1	chr10	56378962	56379162	+	1	NA	NA	NA	1762	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.040000	0.522388	
mm_101014.1	chr11	8549132	8549332	-	1	NA	NA	NA	115303	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.015000	0.532338	
mm_110542.1	chr12	55302864	55303064	-	1	NA	NA	NA	36	NM_021529	59032	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	0.065000	0.472637	
mm_9529.1	chr1	173798015	173798215	-	1	NA	NA	NA	-31196	NM_008329	15951	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.000000	0.363184	50(GCACATAAAAGA,-,0.00)
mm_93183.1	chr10	93844726	93844926	-	1	NA	NA	NA	13271	NM_001206851	327799	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.020000	0.552239	
mm_143122.1	chr17	57210188	57210388	-	1	NA	NA	NA	6940	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.025000	0.522388	
mm_13144.1	chr2	92185351	92185551	+	1	NA	NA	NA	-32	NM_001109691	192285	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0.085000	0.621891	
mm_58004.1	chr6	136449221	136449421	-	1	NA	NA	NA	-33752	NM_001201390	100502936	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	0.020000	0.447761	
mm_152312.1	chr19	9899296	9899496	-	1	NA	NA	NA	137	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.150000	0.681592	
mm_149004.1	chr19	8712128	8712328	+	1	NA	NA	NA	1669	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.010000	0.472637	
mm_61789.1	chr7	83883632	83883832	+	1	NA	NA	NA	609	NM_030705	80889	Mm.272998	NM_030705	ENSMUSG00000070462	Mesdc1	AW061151	mesoderm development candidate 1	protein-coding	0.145000	0.776119	67(GCTCTTAGGGCG,+,0.00)
mm_164589.1	chr17	26509429	26509629	-	1	NA	NA	NA	-1057	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.025000	0.517413	
mm_117861.1	chr13	98815495	98815695	-	1	NA	NA	NA	-146	NM_172591	218503	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.025000	0.582090	
mm_126263.1	chr15	79108965	79109165	+	1	NA	NA	NA	82	NM_177461	27008	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	0.170000	0.815920	
mm_168135.1	chr10	29619543	29619743	+	1	NA	NA	NA	-83776	NM_028351	72780	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0.045000	0.492537	
mm_105546.1	chr11	106345002	106345202	-	1	NA	NA	NA	4288	NM_133199	110880	Mm.432528	NM_133199	ENSMUSG00000001027	Scn4a	Nav1.4|SkM1|mH2	sodium channel, voltage-gated, type IV, alpha	protein-coding	0.010000	0.537313	
mm_163390.1	chr12	58268737	58268937	-	1	NA	NA	NA	421	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	0.050000	0.611940	
mm_43153.1	chr5	125532311	125532511	+	1	NA	NA	NA	-7	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0.115000	0.786070	
mm_32355.1	chr4	105157321	105157521	+	1	NA	NA	NA	74	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.070000	0.601990	
mm_155744.1	chrX	96166721	96166921	+	1	NA	NA	NA	70776	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.020000	0.492537	
mm_68574.1	chr7	115841522	115841722	-	1	NA	NA	NA	4518	NM_001277326	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.005000	0.452736	
mm_168904.1	chr12	55155240	55155440	+	1	NA	NA	NA	236	NM_001100109	665155	Mm.12848	NM_001100109	ENSMUSG00000079108	Srp54b	-	signal recognition particle 54B	protein-coding	0.065000	0.587065	
mm_65349.1	chr7	24997128	24997328	-	1	NA	NA	NA	8709	NM_001290469	232975	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.045000	0.562189	
mm_161849.1	chr18	12305582	12305782	-	1	NA	NA	NA	38	NM_001190371	225187	Mm.53865	NM_001190371	ENSMUSG00000057766	Ankrd29	G630054C21|G630054C21Rik|Gm95	ankyrin repeat domain 29	protein-coding	0.155000	0.791045	
mm_23583.1	chr3	63964710	63964910	+	1	NA	NA	NA	-77	NM_015728	11416	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	0.095000	0.567164	
mm_168555.1	chr1	165526510	165526710	+	1	NA	NA	NA	41427	NM_173029	271639	Mm.66952	NM_173029	ENSMUSG00000026567	Adcy10	4930431D04Rik|4931412F17|Sacy|sAC	adenylate cyclase 10	protein-coding	0.025000	0.532338	
mm_124075.1	chr14	78620858	78621058	-	1	NA	NA	NA	8332	NM_001253766	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.035000	0.497512	
mm_61418.1	chr7	73617215	73617415	+	1	NA	NA	NA	-58920	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.030000	0.412935	
mm_95451.1	chr11	50325825	50326025	+	1	NA	NA	NA	-252	NM_001110500	12330	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	0.105000	0.656716	
mm_135130.1	chr16	35843903	35844103	-	1	NA	NA	NA	27379	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.010000	0.482587	
mm_29833.1	chr3	129755216	129755416	-	1	NA	NA	NA	6	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.010000	0.467662	-36(AGCTTTAAAAAG,-,0.00),-35(GCTTTAAAAAGG,+,0.00),-34(CTTTAAAAAGGA,+,0.00),21(CTGTATATAGGG,-,0.00)
mm_42191.1	chr5	112269427	112269627	+	1	NA	NA	NA	-7164	NM_001326590	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.055000	0.611940	40(GTTCTTATAGCC,+,0.00)
mm_49502.1	chr6	29768453	29768653	+	1	NA	NA	NA	110	NM_001171000	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.080000	0.701493	
mm_26175.1	chr3	138288737	138288937	+	1	NA	NA	NA	11192	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.030000	0.532338	
mm_84911.1	chr9	79977696	79977896	-	1	NA	NA	NA	86	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.040000	0.512438	
mm_77873.1	chr9	6168483	6168683	+	1	NA	NA	NA	-29	NM_027924	71785	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0.065000	0.597015	
mm_148463.1	chr19	4081474	4081674	+	1	NA	NA	NA	-914	NM_001160253	29866	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0.005000	0.552239	
mm_93808.1	chr10	120979250	120979450	-	1	NA	NA	NA	-20	NM_001081193	380664	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	0.135000	0.686567	
mm_98919.1	chr11	98326207	98326407	+	1	NA	NA	NA	3338	NM_010895	18013	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0.045000	0.537313	
mm_127890.1	chr15	9155239	9155439	-	1	NA	NA	NA	86	NM_001285980	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.015000	0.542289	
mm_37647.1	chr4	128745006	128745206	-	1	NA	NA	NA	-14152	NM_001009819	215493	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	0.030000	0.557214	
mm_31000.1	chr4	40155726	40155926	+	1	NA	NA	NA	12561	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.015000	0.542289	
mm_11070.1	chr2	27676899	27677099	+	1	NA	NA	NA	-202	NM_011305	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.130000	0.766169	
mm_11818.1	chr2	44160789	44160989	+	1	NA	NA	NA	-95565	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.005000	0.293532	
mm_26164.1	chr3	138279696	138279896	+	1	NA	NA	NA	2151	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.030000	0.477612	
mm_104064.1	chr11	86584951	86585151	-	1	NA	NA	NA	-893	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.393035	54(GGCTTTTTAGGC,-,0.00)
mm_71083.1	chr8	34804831	34805031	+	1	NA	NA	NA	-2679	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.075000	0.597015	
mm_65463.1	chr7	25471885	25472085	-	1	NA	NA	NA	5640	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.005000	0.492537	
mm_69503.1	chr7	134232065	134232265	-	1	NA	NA	NA	-7068	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.025000	0.462687	-59(GGCCATAAAAAT,-,0.00)
mm_52487.1	chr6	114643099	114643299	+	1	NA	NA	NA	102	NM_001253717	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.085000	0.621891	
mm_164510.1	chr16	94760826	94761026	-	1	NA	NA	NA	95764	NM_001025590	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.030000	0.661692	
mm_60986.1	chr7	49160414	49160614	+	1	NA	NA	NA	-85675	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.005000	0.532338	
mm_24674.1	chr3	94837300	94837500	+	1	NA	NA	NA	-167	NM_001165948	229584	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	0.080000	0.636816	
mm_74159.1	chr8	123397764	123397964	+	1	NA	NA	NA	-9218	NM_008559	17199	Mm.324942	NM_008559	ENSMUSG00000074037	Mc1r	Mcr1|Mshra|Tob|e	melanocortin 1 receptor	protein-coding	0.015000	0.547264	
mm_26311.1	chr3	142519227	142519427	+	1	NA	NA	NA	-11009	NM_001083312	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.010000	0.432836	
mm_16244.1	chr2	173158267	173158467	+	1	NA	NA	NA	5294	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.050000	0.592040	
mm_116169.1	chr13	30792168	30792368	-	1	NA	NA	NA	43035	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.015000	0.487562	
mm_64552.1	chr7	144424019	144424219	+	1	NA	NA	NA	19314	NR_037302	100499519		NR_037302	ENSMUSG00000093912	Mir3470b	mmu-mir-3470b	microRNA 3470b	ncRNA	0.010000	0.363184	
mm_17077.1	chr2	22874892	22875092	-	1	NA	NA	NA	-20530	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.055000	0.691542	
mm_155522.1	chrX	74255170	74255370	+	1	NA	NA	NA	583	NM_007927	13726	Mm.18892	NM_007927	ENSMUSG00000001964	Emd	AW550900|Sta	emerin	protein-coding	0.045000	0.542289	
mm_33416.1	chr4	129960671	129960871	+	1	NA	NA	NA	-77	NR_040648	72225	Mm.102193	NR_040647		1700003M07Rik	-	RIKEN cDNA 1700003M07 gene	ncRNA	0.055000	0.522388	
mm_128855.1	chr15	72034113	72034313	-	1	NA	NA	NA	14	NM_027174	69700	Mm.322500	NM_027174	ENSMUSG00000079022	Col22a1	2310067L16Rik|C80743	collagen, type XXII, alpha 1	protein-coding	0.045000	0.691542	
mm_171060.1	chr3	108571597	108571797	+	1	NA	NA	NA	-2	NM_025444	99730	Mm.24431	NM_025444	ENSMUSG00000048100	Taf13	1810004N01Rik|2010309N11Rik|AI847295|TAFII18	TATA-box binding protein associated factor 13	protein-coding	0.080000	0.601990	
mm_135608.1	chr16	52249782	52249982	-	1	NA	NA	NA	203199	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.278607	
mm_89700.1	chr10	97613156	97613356	+	1	NA	NA	NA	6051	NM_008438	16545	Mm.6228	NM_008438	ENSMUSG00000019932	Kera	CNA2|SLRR2B	keratocan	protein-coding	0.000000	0.358209	
mm_97413.1	chr11	77982061	77982261	+	1	NA	NA	NA	-655	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0.025000	0.427861	
mm_114840.1	chr13	92611029	92611229	+	1	NA	NA	NA	-9	NM_172588	218442	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.100000	0.691542	
mm_162086.1	chrX	36864059	36864259	-	1	NA	NA	NA	87	NM_029951	77644	Mm.290704	NM_029951	ENSMUSG00000006423	C330007P06Rik	-	RIKEN cDNA C330007P06 gene	protein-coding	0.100000	0.567164	
mm_149750.1	chr19	22692484	22692684	+	1	NA	NA	NA	-35	NM_001035245	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.005000	0.492537	
mm_7604.1	chr1	126322327	126322527	-	1	NA	NA	NA	170500	NM_172484	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.000000	0.333333	
mm_135987.1	chr16	75092730	75092930	-	1	NA	NA	NA	493231	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.015000	0.442786	-40(TGCTCTTAAAAG,-,0.00),-39(GCTCTTAAAAGA,-,0.00)
mm_61250.1	chr7	65803946	65804146	+	1	NA	NA	NA	-6	NR_045301	100503969	Mm.383527	NR_045301		1810008I18Rik	-	RIKEN cDNA 1810008I18 gene	ncRNA	0.005000	0.537313	
mm_147801.1	chr18	61658048	61658248	-	1	NA	NA	NA	7390	NR_045402	328968	Mm.392305	NR_045402		Carmn	Carmen|E330013P06|Gm16908|Mir143hg	cardiac mesoderm enhancer-associated non-coding RNA	ncRNA	0.010000	0.517413	-85(TACCATAAAAGG,-,0.00),-83(CCATAAAAGGAC,+,0.00)
mm_45556.1	chr5	73175067	73175267	-	1	NA	NA	NA	81451	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.010000	0.323383	
mm_27883.1	chr3	79173172	79173372	-	1	NA	NA	NA	-27397	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.045000	0.517413	
mm_50052.1	chr6	41178064	41178264	+	1	NA	NA	NA	-124108	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.005000	0.527363	-78(GGGCTTAAAGAG,-,0.00),-76(GCTTAAAGAGGT,+,0.00)
mm_157491.1	chrX	48419055	48419255	-	1	NA	NA	NA	43977	NM_019680	56501	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|ENSMUSG00000053512|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	0.010000	0.537313	
mm_36471.1	chr4	82705645	82705845	-	1	NA	NA	NA	153916	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0.015000	0.442786	-64(CCCTTTAGACCA,+,0.00)
mm_18532.1	chr2	64055290	64055490	-	1	NA	NA	NA	42648	NM_001267846	60344	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.020000	0.427861	
mm_149489.1	chr19	11817990	11818190	+	1	NA	NA	NA	1313	NM_001286543	20908	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.020000	0.452736	
mm_88785.1	chr10	80606486	80606686	+	1	NA	NA	NA	-2674	NR_105877	102465550		NR_105877	ENSMUSG00000099283	Mir6912	Gm27990|mmu-mir-6912	microRNA 6912	ncRNA	0.080000	0.706468	
mm_106763.1	chr12	4592539	4592739	+	1	NA	NA	NA	-369	NM_001198969	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.010000	0.502488	
mm_68946.1	chr7	126503568	126503768	-	1	NA	NA	NA	-366	NM_183020	233871	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.100000	0.676617	26(CAGCATTTAAGG,-,0.00),28(GCATTTAAGGTG,+,0.00)
mm_88556.1	chr10	78780406	78780606	+	1	NA	NA	NA	10	NM_009200	20513	Mm.6257	NM_009200	ENSMUSG00000005357	Slc1a6	EAAT4	solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6	protein-coding	0.095000	0.721393	
mm_5501.1	chr1	37334074	37334274	-	1	NA	NA	NA	34336	NM_001290797	269180	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.000000	0.502488	
mm_61870.1	chr7	89426174	89426374	+	1	NA	NA	NA	-32	NR_102276	101521	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	0.015000	0.417910	
mm_94259.1	chr11	3488120	3488320	+	1	NA	NA	NA	-7	NM_172791	237625	Mm.100476	NM_172791	ENSMUSG00000034579	Pla2g3	-	phospholipase A2, group III	protein-coding	0.025000	0.621891	
mm_101443.1	chr11	30159593	30159793	-	1	NA	NA	NA	38564	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.010000	0.507463	
mm_66334.1	chr7	42980764	42980964	-	1	NA	NA	NA	-37934	NM_001105061	668612	Mm.469896	NM_001105061	ENSMUSG00000091528	Gm9268	EG668612|Vmn2r64	predicted gene 9268	protein-coding	0.025000	0.517413	-33(GGCTATAAAAGG,-,0.00)
mm_141608.1	chr17	32808921	32809121	-	1	NA	NA	NA	910	NM_001267583	240063	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	0.010000	0.452736	
mm_74818.1	chr8	22805523	22805723	-	1	NA	NA	NA	31	NM_029505	64933	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	0.115000	0.701493	
mm_60610.1	chr7	44590796	44590996	+	1	NA	NA	NA	10	NM_001290682	16504	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.090000	0.711443	
mm_125687.1	chr15	66803890	66804090	+	1	NA	NA	NA	27839	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.015000	0.527363	
mm_78984.1	chr9	45390655	45390855	+	1	NA	NA	NA	-8954	NR_028499	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.025000	0.592040	
mm_9451.1	chr1	172602461	172602661	-	1	NA	NA	NA	-10	NM_001164725	677296	Mm.439612	NM_001164725	ENSMUSG00000070504	Fcrl6	ENSMUSG00000070504|FcRH6|mIFGP6|moFcRH6	Fc receptor-like 6	protein-coding	0.005000	0.512438	
mm_98106.1	chr11	86860356	86860556	+	1	NA	NA	NA	-52796	NM_026191	67487	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.010000	0.497512	
mm_48990.1	chr6	4755959	4756159	+	1	NA	NA	NA	8753	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.020000	0.462687	
mm_144997.1	chr18	38297157	38297357	+	1	NA	NA	NA	452	NM_001164621	56736	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	0.030000	0.432836	
mm_139989.1	chr17	72871603	72871803	+	1	NA	NA	NA	34999	NM_027166	383295	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee-like 5 (Drosophila)	protein-coding	0.010000	0.437811	
mm_122614.1	chr14	51093426	51093626	-	1	NA	NA	NA	2449	NM_021472	58809	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	0.010000	0.487562	
mm_105299.1	chr11	102552931	102553131	-	1	NA	NA	NA	3127	NM_001159492	237943	Mm.260282	NM_001159492	ENSMUSG00000034621	Gpatch8	5430405G24Rik|AU018890|ENSMUSG00000075516|Fbm1|Gpatc8|mKIAA0553	G patch domain containing 8	protein-coding	0.005000	0.402985	82(GGTTATATAAGC,-,0.00)
mm_96985.1	chr11	70656837	70657037	+	1	NA	NA	NA	-239	NM_001136062	13808	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.000000	0.472637	-77(CTTTCTAAAAGG,-,0.00)
mm_19018.1	chr2	76928839	76929039	-	1	NA	NA	NA	53608	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.010000	0.442786	
mm_146074.1	chr18	70568366	70568566	+	1	NA	NA	NA	174	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.135000	0.781095	
mm_87777.1	chr10	60294974	60295174	+	1	NA	NA	NA	10613	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.532338	
mm_116823.1	chr13	54593904	54594104	-	1	NA	NA	NA	3773	NM_025933	67044	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	0.025000	0.547264	
mm_139138.1	chr17	47509426	47509626	+	1	NA	NA	NA	4475	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.477612	
mm_149442.1	chr19	11480917	11481117	+	1	NA	NA	NA	-11021	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.005000	0.383085	
mm_108601.1	chr12	85468855	85469055	+	1	NA	NA	NA	-4946	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.050000	0.512438	
mm_151192.1	chr19	53529044	53529244	+	1	NA	NA	NA	-174	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.115000	0.681592	-73(GGCCTTATATGG,-,0.00),-71(CCTTATATGGGC,+,0.00)
mm_97487.1	chr11	78324811	78325011	+	1	NA	NA	NA	713	NM_009657	11676	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0.010000	0.552239	-51(GTGTATATAAGA,-,0.00)
mm_98028.1	chr11	85194264	85194464	+	1	NA	NA	NA	23268	NM_028589	73634	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0.020000	0.557214	2(CACCTTAAATGG,-,0.00),4(CCTTAAATGGTG,+,0.00)
mm_169369.1	chr14	33185157	33185357	-	1	NA	NA	NA	-191	NM_001146022	545030	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.025000	0.567164	
mm_167682.1	chr9	80696266	80696466	+	1	NA	NA	NA	-230928	NM_022016	63859	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	0.005000	0.288557	
mm_135711.1	chr16	55523639	55523839	-	1	NA	NA	NA	29008	NR_039578	100628589		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.010000	0.383085	-78(GGATATAAAAGG,-,0.00)
mm_99891.1	chr11	109543615	109543815	+	1	NA	NA	NA	4	NM_001166177	74008	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872	arylsulfatase G	protein-coding	0.025000	0.562189	
mm_128913.1	chr15	73643158	73643358	-	1	NA	NA	NA	-18514	NM_001033219	106068	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.010000	0.417910	
mm_26895.1	chr3	19238788	19238988	-	1	NA	NA	NA	26120	NM_008802	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.000000	0.477612	
mm_43320.1	chr5	134986131	134986331	+	1	NA	NA	NA	17	NM_009902	12739	Mm.158662	NM_009902	ENSMUSG00000070473	Cldn3	AI182374|Cpetr2|mRVP1	claudin 3	protein-coding	0.045000	0.646766	
mm_83302.1	chr9	43736879	43737079	-	1	NA	NA	NA	-7597	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	0.015000	0.487562	
mm_104562.1	chr11	96829828	96830028	-	1	NA	NA	NA	40	NM_008686	18023	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	0.095000	0.711443	
mm_33871.1	chr4	135997329	135997529	+	1	NA	NA	NA	-10185	NM_025411	66193	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	0.055000	0.467662	
mm_162971.1	chr11	11699455	11699655	-	1	NA	NA	NA	9378	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.015000	0.547264	
mm_8105.1	chr1	135850707	135850907	-	1	NA	NA	NA	9946	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.020000	0.562189	
mm_171701.1	chr4	72028042	72028242	-	1	NA	NA	NA	172751	NM_011599	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.025000	0.353234	-28(ATCTATATAAAG,-,0.00)
mm_24172.1	chr3	88573150	88573350	+	1	NA	NA	NA	-6421	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.005000	0.437811	-33(CTGTATAAAAAC,-,0.00)
mm_106616.1	chr11	120818491	120818691	-	1	NA	NA	NA	5956	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.040000	0.592040	
mm_85713.1	chr9	108208371	108208571	-	1	NA	NA	NA	-18088	NM_007567	12217	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	0.025000	0.547264	
mm_64001.1	chr7	140137532	140137732	+	1	NA	NA	NA	68	NM_199301	212508	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	0.100000	0.681592	
mm_61967.1	chr7	90426466	90426666	+	1	NA	NA	NA	254	NM_027298	70054	Mm.307198	NM_027298	ENSMUSG00000044362	Ccdc89	1700019B01Rik|AU022100|BOIP	coiled-coil domain containing 89	protein-coding	0.050000	0.507463	
mm_119448.1	chr14	46882897	46883097	+	1	NA	NA	NA	32	NM_001037221	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.115000	0.696517	
mm_169954.1	chr16	8562717	8562917	-	1	NA	NA	NA	49388	NM_172961	268860	Mm.259315	NM_172961	ENSMUSG00000057880	Abat	9630038C02Rik|AI255750|ENSMUSG00000051226|Gabaat|Gabat|Gm9851|I54|Laibat|X61497	4-aminobutyrate aminotransferase	protein-coding	0.020000	0.537313	
mm_142616.1	chr17	46858570	46858770	-	1	NA	NA	NA	-27257	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.095000	0.512438	
mm_65001.1	chr7	17027727	17027927	-	1	NA	NA	NA	87	NM_011155	19060	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	0.135000	0.716418	
mm_105105.1	chr11	100958803	100959003	-	1	NA	NA	NA	11714	NM_008986	19285	Mm.21864	NM_008986	ENSMUSG00000004044	Ptrf	2310075E07Rik|AW546441|Cav-p60|Cavin	polymerase I and transcript release factor	protein-coding	0.100000	0.621891	
mm_50110.1	chr6	41533695	41533895	+	1	NA	NA	NA	12019	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.422886	
mm_38212.1	chr4	135898389	135898589	-	1	NA	NA	NA	3300	NM_009924	12802	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0.015000	0.502488	
mm_106757.1	chr12	4227470	4227670	+	1	NA	NA	NA	-6457	NM_001204912	69709	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.020000	0.467662	
mm_47712.1	chr5	129998027	129998227	-	1	NA	NA	NA	4701	NM_010368	110006	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.055000	0.567164	
mm_154631.1	chrX	7762616	7762816	+	1	NA	NA	NA	55	NM_172472	209446	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	0.065000	0.651741	
mm_76590.1	chr8	89042667	89042867	-	1	NA	NA	NA	1395	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.130000	0.696517	
mm_19401.1	chr2	91635822	91636022	-	1	NA	NA	NA	535	NM_010168	14061	Mm.89048	NM_010168	ENSMUSG00000027249	F2	Cf-2|Cf2|FII	coagulation factor II	protein-coding	0.040000	0.621891	
mm_143125.1	chr17	57211619	57211819	-	1	NA	NA	NA	5509	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.030000	0.601990	
mm_22579.1	chr3	10366897	10367097	+	1	NA	NA	NA	24	NM_025519	66371	Mm.366147	NM_025519	ENSMUSG00000027536	Chmp4c	2010012P02Rik|2210015K02Rik|2310010I16Rik|Shax3|Snf7-3	charged multivesicular body protein 4C	protein-coding	0.060000	0.631841	52(GTTCTTTAAAGG,-,0.00),53(TTCTTTAAAGGG,-,0.00),54(TCTTTAAAGGGA,+,0.00)
mm_167714.1	chr9	97234070	97234270	-	1	NA	NA	NA	-123129	NM_138756	192287	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.030000	0.512438	-31(GGGCATAAAGAG,-,0.00),-21(AGCTTTTAAAAC,-,0.00),-20(GCTTTTAAAACA,+,0.00),-19(CTTTTAAAACAC,+,0.00)
mm_84838.1	chr9	78368072	78368272	-	1	NA	NA	NA	27	NM_025274	434423	Mm.139314	NM_025274	ENSMUSG00000060461	Dppa5a	AA536857|Dppa5|Esg1|ecat2	developmental pluripotency associated 5A	protein-coding	0.050000	0.587065	
mm_29122.1	chr3	105052868	105053068	-	1	NA	NA	NA	-15	NM_001163332	80281	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.105000	0.706468	
mm_107470.1	chr12	37416589	37416789	+	1	NA	NA	NA	175050	NM_178767	319660	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	0.010000	0.388060	
mm_85087.1	chr9	91381327	91381527	-	1	NA	NA	NA	12455	NM_009576	22774	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.080000	0.666667	
mm_131525.1	chr16	17619439	17619639	+	1	NA	NA	NA	185	NM_001164609	77626	Mm.34659	NM_029945	ENSMUSG00000005899	Smpd4	4122402O22Rik|mKIAA1418	sphingomyelin phosphodiesterase 4	protein-coding	0.110000	0.736318	
mm_64396.1	chr7	142494774	142494974	+	1	NA	NA	NA	-3962	NM_001347549	21957	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	0.005000	0.432836	
mm_72458.1	chr8	83243007	83243207	+	1	NA	NA	NA	-47241	NM_009463	22227	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	0.015000	0.467662	
mm_75849.1	chr8	70648275	70648475	-	1	NA	NA	NA	11363	NM_023217	66522	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0.005000	0.442786	
mm_93958.1	chr10	127282475	127282675	-	1	NA	NA	NA	6443	NM_001347171	110962	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.010000	0.497512	
mm_128151.1	chr15	32244326	32244526	-	1	NA	NA	NA	236	NR_038186	100616095	Mm.391938	NR_038186	ENSMUSG00000096956	Snhg18	0610007N19Rik|Snord123	small nucleolar RNA host gene 18	ncRNA	0.055000	0.592040	-27(CTGTATAAAGGG,-,0.00)
mm_25348.1	chr3	106788165	106788365	+	1	NA	NA	NA	1884	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.000000	0.407960	
mm_79097.1	chr9	46242936	46243136	+	1	NA	NA	NA	2192	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.020000	0.582090	
mm_68306.1	chr7	105746579	105746779	-	1	NA	NA	NA	-2341	NM_020024	24075	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	0.015000	0.552239	
mm_76607.1	chr8	90816969	90817169	-	1	NA	NA	NA	-11766	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.010000	0.517413	
mm_11451.1	chr2	32085397	32085597	+	1	NA	NA	NA	-1792	NM_175511	241303	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.010000	0.542289	
mm_87151.1	chr10	35102520	35102720	+	1	NA	NA	NA	619220	NM_010237	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.000000	0.303483	21(GCTTTAAAAATC,+,0.00)
mm_44531.1	chr5	24445165	24445365	-	1	NA	NA	NA	-30	NM_023229	66587	Mm.28123	NM_023229	ENSMUSG00000028959	Fastk	0610011K02Rik|610011K02Rik	Fas-activated serine/threonine kinase	protein-coding	0.120000	0.731343	
mm_94018.1	chr10	127663376	127663576	-	1	NA	NA	NA	3227	NM_001122895	17937	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0.020000	0.512438	
mm_13222.1	chr2	97466366	97466566	+	1	NA	NA	NA	-1191	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.010000	0.482587	
mm_11834.1	chr2	45110384	45110584	+	1	NA	NA	NA	-207	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.040000	0.532338	
mm_87749.1	chr10	60267090	60267290	+	1	NA	NA	NA	-10438	NM_001146123	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.010000	0.472637	
mm_90790.1	chr10	7064096	7064296	-	1	NA	NA	NA	-41011	NM_001033391	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.020000	0.477612	
mm_27970.1	chr3	80797888	80798088	-	1	NA	NA	NA	4803	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.000000	0.338308	-5(TCTTTTCAAGCC,+,0.00)
mm_142255.1	chr17	37995610	37995810	-	1	NA	NA	NA	-42688	NM_001011829	258094	Mm.377348	NM_001011829	ENSMUSG00000109376	Olfr761	MOR218-12|MOR218-5P|MOR218-6P|Olfr1552-ps1	olfactory receptor 761	protein-coding	0.020000	0.487562	
mm_131445.1	chr16	16269585	16269785	+	1	NA	NA	NA	-33280	NR_038046	70120	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	0.005000	0.512438	76(GCCTATAAGAAG,-,0.00)
mm_138389.1	chr17	35050159	35050359	+	1	NA	NA	NA	16	NM_033444	114584	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.045000	0.661692	
mm_139740.1	chr17	61781510	61781710	+	1	NA	NA	NA	1099707	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.040000	0.567164	
mm_52085.1	chr6	97829233	97829433	+	1	NA	NA	NA	22275	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.412935	
mm_32624.1	chr4	114610508	114610708	+	1	NA	NA	NA	203884	NM_001085549	666048	Mm.331779	NM_001085549	ENSMUSG00000070867	Trabd2b	Gm12824|Hkat|OTTMUSG00000008561	TraB domain containing 2B	protein-coding	0.000000	0.502488	
mm_132928.1	chr16	49842950	49843150	+	1	NA	NA	NA	-12604	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.000000	0.487562	
mm_86672.1	chr10	18055704	18055904	+	1	NA	NA	NA	-136	NM_009048	19707	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0.185000	0.820896	
mm_74347.1	chr8	127521099	127521299	+	1	NA	NA	NA	221547	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.010000	0.313433	
mm_24343.1	chr3	89782195	89782395	+	1	NA	NA	NA	8686	NM_027315	70093	Mm.41438	NM_027315	ENSMUSG00000042572	Ube2q1	1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q	ubiquitin-conjugating enzyme E2Q family member 1	protein-coding	0.005000	0.542289	
mm_32970.1	chr4	120032716	120032916	+	1	NA	NA	NA	-128390	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.195000	0.850746	
mm_159380.1	chr3	90213600	90213800	+	1	NA	NA	NA	-15	NM_001293741	68328	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	0.070000	0.522388	
mm_145187.1	chr18	49755676	49755876	+	1	NA	NA	NA	-175	NM_001170960	68857	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0.045000	0.522388	55(GTATTTAAAAGA,-,0.00)
mm_29050.1	chr3	103735619	103735819	-	1	NA	NA	NA	2282	NM_133859	99543	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	0.005000	0.432836	-26(GCTCATATACCC,+,0.00)
mm_36924.1	chr4	108217928	108218128	-	1	NA	NA	NA	-106	NM_001167936	230590	Mm.301798	NM_001167936	ENSMUSG00000034645	Zyg11a	BC022150	zyg-11 family member A, cell cycle regulator	protein-coding	0.165000	0.781095	
mm_150268.1	chr19	34232512	34232712	+	1	NA	NA	NA	22761	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.015000	0.452736	
mm_58192.1	chr6	143075716	143075916	-	1	NA	NA	NA	24336	NM_001286578	74741	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.015000	0.497512	-27(GCCTCTAAATAC,-,0.00)
mm_61188.1	chr7	63444749	63444949	+	1	NA	NA	NA	77	NM_130880	170711	Mm.156872	NM_130880	ENSMUSG00000033510	Otud7a	AJ430384|Otud7	OTU domain containing 7A	protein-coding	0.145000	0.761194	
mm_41209.1	chr5	88554372	88554572	+	1	NA	NA	NA	-11	NM_023054	65961	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	0.100000	0.676617	
mm_15298.1	chr2	155384466	155384666	+	1	NA	NA	NA	2710	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.000000	0.402985	
mm_18005.1	chr2	38229892	38230092	-	1	NA	NA	NA	57392	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.015000	0.442786	
mm_878.1	chr1	52155250	52155450	+	1	NA	NA	NA	35728	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.005000	0.328358	
mm_116759.1	chr13	52561830	52562030	-	1	NA	NA	NA	11295	NR_046069	100040572	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0.000000	0.388060	
mm_30797.1	chr4	19872127	19872327	+	1	NA	NA	NA	50339	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.030000	0.537313	
mm_22683.1	chr3	16196426	16196626	+	1	NA	NA	NA	13343	NM_001145919	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.000000	0.283582	
mm_169166.1	chr13	65503592	65503792	-	1	NA	NA	NA	224838	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.005000	0.462687	
mm_97996.1	chr11	84129646	84129846	+	1	NA	NA	NA	-178	NM_172562	217031	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	0.105000	0.696517	
mm_139484.1	chr17	56074635	56074835	+	1	NA	NA	NA	254	NM_024432	66530	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0.050000	0.631841	
mm_61326.1	chr7	68228016	68228216	+	1	NA	NA	NA	36117	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.005000	0.527363	
mm_117909.1	chr13	99430364	99430564	-	1	NA	NA	NA	-17638	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.025000	0.482587	
mm_90201.1	chr10	120316947	120317147	+	1	NA	NA	NA	-72476	NR_040626	320626	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	0.040000	0.462687	
mm_3377.1	chr1	139268187	139268387	+	1	NA	NA	NA	108789	NM_133239	170788	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	0.000000	0.363184	
mm_7107.1	chr1	89683787	89683987	-	1	NA	NA	NA	5	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.010000	0.477612	
mm_90909.1	chr10	11492018	11492218	-	1	NA	NA	NA	-117106	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.095000	0.731343	
mm_60485.1	chr7	44478413	44478613	+	1	NA	NA	NA	-6004	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.512438	
mm_10244.1	chr2	8946916	8947116	+	1	NA	NA	NA	-242499	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.010000	0.472637	
mm_84810.1	chr9	77347752	77347952	-	1	NA	NA	NA	18	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.025000	0.432836	-98(ATCTATAAATGG,-,0.00)
mm_32877.1	chr4	118620756	118620956	+	1	NA	NA	NA	57	NM_026932	69072	Mm.29906	NM_026932	ENSMUSG00000028729	Ebna1bp2	1810014B19Rik|AA537058|B830003A16Rik|C81321|Ebp2|Nobp|p40	EBNA1 binding protein 2	protein-coding	0.080000	0.592040	-24(CTGTTGAAAAGG,-,0.00)
mm_17328.1	chr2	26503695	26503895	-	1	NA	NA	NA	27	NM_008714	18128	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0.115000	0.781095	
mm_81597.1	chr9	110532353	110532553	+	1	NA	NA	NA	-144	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.100000	0.736318	-69(GTCTCTTTAAGG,-,0.00),-67(CTCTTTAAGGGG,+,0.00),-66(TCTTTAAGGGGC,+,0.00)
mm_15618.1	chr2	160888078	160888278	+	1	NA	NA	NA	10	NM_001199118	64899	Mm.292111	NM_022883	ENSMUSG00000027412	Lpin3	9130206L11Rik|AA438110|AV236139|mKIAA4023	lipin 3	protein-coding	0.055000	0.597015	
mm_24199.1	chr3	88615357	88615557	+	1	NA	NA	NA	-750	NM_001198911	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.547264	
mm_29459.1	chr3	113574121	113574321	-	1	NA	NA	NA	541	NM_007446	11722	Mm.439727	NM_007446	ENSMUSG00000074264	Amy1	Amy-1|Amy1a|C030014B17Rik	amylase 1, salivary	protein-coding	0.005000	0.338308	
mm_149154.1	chr19	9015345	9015545	+	1	NA	NA	NA	-2459	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.015000	0.467662	
mm_171687.1	chr4	60457791	60457991	-	1	NA	NA	NA	-35939	NM_001281979	100038948	Mm.482231	NM_001126319	ENSMUSG00000078686	Mup9	Gm14076|Mup2|Mup6|OTTMUSG00000015595	major urinary protein 9	protein-coding	0.030000	0.572139	
mm_156199.1	chrX	134404466	134404666	+	1	NA	NA	NA	-214	NM_010078	13497	Mm.121662	NM_010078	ENSMUSG00000000223	Drp2	AW495265|DRP-2	dystrophin related protein 2	protein-coding	0.045000	0.522388	
mm_158971.1	chr1	107161026	107161226	-	1	NA	NA	NA	-12	NM_198680	383548	Mm.483991	NM_198680	ENSMUSG00000073602	Serpinb3b	Scca2-rs|Scca2-rs1	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 3B	protein-coding	0.000000	0.388060	
mm_47820.1	chr5	134232142	134232342	-	1	NA	NA	NA	-2617	NR_104383	17969	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.005000	0.537313	
mm_32337.1	chr4	104463898	104464098	+	1	NA	NA	NA	96460	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding	0.020000	0.527363	
mm_24348.1	chr3	89864303	89864503	+	1	NA	NA	NA	33033	NM_172530	214547	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.020000	0.432836	
mm_118974.1	chr14	28008141	28008341	+	1	NA	NA	NA	385834	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	0.005000	0.278607	
mm_115717.1	chr13	15908769	15908969	-	1	NA	NA	NA	101626	NR_046131	328190	Mm.446957	NR_046131		A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0.000000	0.373134	
mm_34122.1	chr4	139249519	139249719	+	1	NA	NA	NA	55508	NM_001271405	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.045000	0.452736	
mm_154341.1	chrM	4658	4858	+	1	NA	NA	NA	NA	NA									0.005000	0.318408	27(TCTTTTATACTC,+,0.00)
mm_59082.1	chr7	19678095	19678295	+	1	NA	NA	NA	-254	NM_001277944	11813	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0.015000	0.547264	
mm_35851.1	chr4	48473330	48473530	-	1	NA	NA	NA	-8	NM_172304	269536	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0.150000	0.706468	
mm_77986.1	chr9	7873079	7873279	+	1	NA	NA	NA	-9	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.030000	0.517413	29(CGCCTTAAGAGG,-,0.00),30(GCCTTAAGAGGC,+,0.00)
mm_159066.1	chr2	23321146	23321346	+	1	NA	NA	NA	0	NM_008752	18232	Mm.131616	NM_008752	ENSMUSG00000069132	Nxph2	-	neurexophilin 2	protein-coding	0.050000	0.582090	
mm_113930.1	chr13	49609049	49609249	+	1	NA	NA	NA	1078	NM_008760	18295	Mm.4258	NM_008760	ENSMUSG00000021390	Ogn	3110079A16Rik|OG|OIF|SLRR3A|mimecan|mimican	osteoglycin	protein-coding	0.010000	0.452736	-77(GCTTTTAAAAAC,+,0.00),-77(GCTTTTAAAAAC,-,0.00)
mm_154031.1	chr19	53451426	53451626	-	1	NA	NA	NA	13270	NR_028427	381232	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|ENSMUSG00000074788|Gm10758	myocardial infarction associated transcript 1	ncRNA	0.035000	0.487562	
mm_148624.1	chr19	5425143	5425343	+	1	NA	NA	NA	99	NM_001256515	107242	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	0.145000	0.761194	
mm_96688.1	chr11	69589573	69589773	+	1	NA	NA	NA	9314	NM_001127233	22059	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.045000	0.577114	
mm_118110.1	chr13	103921049	103921249	-	1	NA	NA	NA	-563	NM_001005868	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.145000	0.800995	
mm_31452.1	chr4	48618657	48618857	+	1	NA	NA	NA	33564	NM_021436	230157	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0.010000	0.427861	
mm_25051.1	chr3	98309935	98310135	+	1	NA	NA	NA	29604	NM_008256	15360	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.005000	0.482587	
mm_14330.1	chr2	129371841	129372041	+	1	NA	NA	NA	-802	NM_008361	16176	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	0.005000	0.517413	-93(GCCTCTATGAGG,-,0.00)
mm_10234.1	chr2	6471972	6472172	+	1	NA	NA	NA	119336	NM_181399	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.010000	0.502488	
mm_99875.1	chr11	109425490	109425690	+	1	NA	NA	NA	-356	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.115000	0.641791	
mm_62062.1	chr7	92447625	92447825	+	1	NA	NA	NA	-113424	NM_025515	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.000000	0.487562	
mm_65873.1	chr7	29505816	29506016	-	1	NA	NA	NA	-456	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.025000	0.527363	
mm_13362.1	chr2	103439292	103439492	+	1	NA	NA	NA	15324	NM_010125	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.030000	0.567164	
mm_172589.1	chr8	125521295	125521495	-	1	NA	NA	NA	-28685	NM_001081337	244668	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.020000	0.542289	
mm_59873.1	chr7	30280015	30280215	+	1	NA	NA	NA	21	NR_144498	108167416	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	0.100000	0.691542	
mm_88955.1	chr10	81384382	81384582	+	1	NA	NA	NA	54	NM_133964	102115	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	0.115000	0.601990	
mm_105865.1	chr11	114185551	114185751	-	1	NA	NA	NA	-12607	NR_045930	73536	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.030000	0.577114	
mm_152297.1	chr19	9083648	9083848	-	1	NA	NA	NA	4208	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.015000	0.472637	
mm_350.1	chr1	31222715	31222915	+	1	NA	NA	NA	-24	NM_029062	74708	Mm.246796	NM_029062	ENSMUSG00000026063	Pih1d3	4930521A18Rik	PIH1 domain containing 3	protein-coding	0.015000	0.497512	
mm_110959.1	chr12	76795375	76795575	-	1	NA	NA	NA	79	NM_030677	14776	Mm.441856	NM_030677	ENSMUSG00000042808	Gpx2	GI-GPx|GPx-GI|GSHPx-2|GSHPx-GI	glutathione peroxidase 2	protein-coding	0.020000	0.532338	
mm_162860.1	chr10	93123972	93124172	-	1	NA	NA	NA	-36804	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.010000	0.472637	
mm_66235.1	chr7	35275453	35275653	-	1	NA	NA	NA	42887	NM_026181	67471	Mm.358705	NM_026181	ENSMUSG00000063808	Gpatch1	1300003A17Rik|ECGP|Gpatc1	G patch domain containing 1	protein-coding	0.060000	0.651741	
mm_137066.1	chr17	20277198	20277398	+	1	NA	NA	NA	8132	NM_001104568	224576	Mm.469854	NM_001104568	ENSMUSG00000091656	Vmn2r106	EG224576	vomeronasal 2, receptor 106	protein-coding	0.010000	0.263682	
mm_90097.1	chr10	116964654	116964854	+	1	NA	NA	NA	14	NR_027847	103175	Mm.27138	NR_027846	ENSMUSG00000031294	D630029K05Rik	AI314111|AI875589	RIKEN cDNA D630029K05 gene	ncRNA	0.005000	0.432836	
mm_56594.1	chr6	108532697	108532897	-	1	NA	NA	NA	43054	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.025000	0.527363	
mm_40388.1	chr5	52741540	52741740	+	1	NA	NA	NA	66	NM_025951	67073	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	0.125000	0.761194	
mm_23460.1	chr3	60472685	60472885	+	1	NA	NA	NA	-45	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.015000	0.378109	
mm_89805.1	chr10	103028861	103029061	+	1	NA	NA	NA	-184	NM_172553	216285	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding	0.035000	0.601990	
mm_150436.1	chr19	37550333	37550533	+	1	NA	NA	NA	15	NM_175353	107371	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0.145000	0.771144	
mm_87741.1	chr10	60266782	60266982	+	1	NA	NA	NA	-10746	NM_001146123	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.015000	0.492537	
mm_101119.1	chr11	12025766	12025966	-	1	NA	NA	NA	2105	NM_001177629	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.095000	0.666667	
mm_128244.1	chr15	36608733	36608933	-	1	NA	NA	NA	140	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.070000	0.437811	
mm_116890.1	chr13	55329650	55329850	-	1	NA	NA	NA	-20	NM_016662	17121	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	0.090000	0.711443	
mm_90555.1	chr10	128110668	128110868	+	1	NA	NA	NA	17985	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.005000	0.407960	
mm_26954.1	chr3	20506098	20506298	-	1	NA	NA	NA	-139021	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0.035000	0.512438	
mm_164472.1	chr16	67620678	67620878	-	1	NA	NA	NA	130	NM_001347247	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.155000	0.781095	
mm_115021.1	chr13	98692213	98692413	+	1	NA	NA	NA	2518	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.035000	0.582090	
mm_27170.1	chr3	33844130	33844330	-	1	NA	NA	NA	80	NM_026222	51938	Mm.275710	NM_026222	ENSMUSG00000027676	Ccdc39	4921507O14Rik|AI447426|AI844750|D3Ertd789e|b2b1304Clo|b2b1735Clo|b2b2025.1Clo	coiled-coil domain containing 39	protein-coding	0.050000	0.567164	
mm_144860.1	chr18	36709135	36709335	+	1	NA	NA	NA	-13310	NM_172831	240216	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0.000000	0.368159	
mm_33843.1	chr4	135802992	135803192	+	1	NA	NA	NA	43377	NM_001085509	242702	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	0.010000	0.457711	
mm_77545.1	chr8	123212661	123212861	-	1	NA	NA	NA	27	NM_145606	234852	Mm.41596	NM_145606	ENSMUSG00000000743	Chmp1a	2900018H07Rik|Pcoln3	charged multivesicular body protein 1A	protein-coding	0.160000	0.761194	
mm_166359.1	chr5	122622319	122622519	-	1	NA	NA	NA	-7901	NM_009879	12589	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	0.015000	0.582090	-35(CACTATAAAAGG,-,0.00)
mm_18794.1	chr2	73886077	73886277	-	1	NA	NA	NA	6462	NM_001284371	11909	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0.010000	0.373134	51(GTTTTAATGGTG,+,0.00)
mm_164336.1	chr16	10992245	10992445	+	1	NA	NA	NA	776	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.045000	0.492537	
mm_85700.1	chr9	108104767	108104967	-	1	NA	NA	NA	-10387	NM_146226	235606	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0.040000	0.636816	
mm_75845.1	chr8	70631536	70631736	-	1	NA	NA	NA	459	NM_011819	23886	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	0.060000	0.626866	-34(GGGTATAAAGGC,-,0.00)
mm_100214.1	chr11	116918766	116918966	+	1	NA	NA	NA	3	NM_172948	268510	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	0.165000	0.771144	
mm_109498.1	chr12	111450418	111450618	+	1	NA	NA	NA	7857	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.005000	0.567164	
mm_78135.1	chr9	20888162	20888362	+	1	NA	NA	NA	87	NM_145610	235036	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog (Drosophila)	protein-coding	0.100000	0.676617	
mm_88027.1	chr10	67224761	67224961	+	1	NA	NA	NA	39111	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.015000	0.462687	
mm_61200.1	chr7	63939232	63939432	+	1	NA	NA	NA	-417	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.100000	0.706468	
mm_168662.1	chr11	88980605	88980805	+	1	NA	NA	NA	6770	NM_016706	12812	Mm.268004	NM_016706	ENSMUSG00000033983	Coil	C79982|Cln80|p80|p80-coilin	coilin	protein-coding	0.005000	0.527363	
mm_29817.1	chr3	129105302	129105502	-	1	NA	NA	NA	-94476	NM_001286942	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.035000	0.378109	
mm_128054.1	chr15	25830454	25830654	-	1	NA	NA	NA	-12744	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.005000	0.407960	
mm_41211.1	chr5	88564934	88565134	+	1	NA	NA	NA	-6	NM_001289774	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.180000	0.835821	
mm_114003.1	chr13	52588103	52588303	+	1	NA	NA	NA	4766	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.005000	0.383085	
mm_74248.1	chr8	124831626	124831826	+	1	NA	NA	NA	31303	NM_025615	66523	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	0.020000	0.636816	
mm_121335.1	chr14	115042654	115042854	+	1	NA	NA	NA	-917	NR_029785	723905		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0.010000	0.383085	
mm_155715.1	chrX	96097724	96097924	+	1	NA	NA	NA	1779	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.005000	0.447761	
mm_74775.1	chr8	21885335	21885535	-	1	NA	NA	NA	-1	NM_139219	246079	Mm.171224	NM_139219	ENSMUSG00000047390	Defb9	BD-9	defensin beta 9	protein-coding	0.000000	0.532338	
mm_117797.1	chr13	97202857	97203057	-	1	NA	NA	NA	-4600	NM_010422	15212	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.020000	0.442786	
mm_136146.1	chr16	87495714	87495914	-	1	NA	NA	NA	55	NM_009840	12469	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	0.120000	0.711443	
mm_53240.1	chr6	127457264	127457464	+	1	NA	NA	NA	3641	NM_181402	101187	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.005000	0.402985	
mm_139152.1	chr17	47540183	47540383	+	1	NA	NA	NA	35232	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.030000	0.502488	
mm_76883.1	chr8	105629029	105629229	-	1	NA	NA	NA	-7409	NM_181322	13018	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0.005000	0.462687	
mm_37092.1	chr4	116557355	116557555	-	1	NA	NA	NA	-272	NM_029868	77110	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	0.120000	0.706468	67(GCCCCTTTAAAG,-,0.00),68(CCCCTTTAAAGC,-,0.00),69(CCCTTTAAAGCT,+,0.00),70(CCTTTAAAGCTC,+,0.00)
mm_125545.1	chr15	58415428	58415628	+	1	NA	NA	NA	60	NM_145959	210998	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.135000	0.716418	
mm_143133.1	chr17	57217059	57217259	-	1	NA	NA	NA	69	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.015000	0.582090	
mm_32374.1	chr4	106313224	106313424	+	1	NA	NA	NA	-2889	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.015000	0.437811	
mm_16856.1	chr2	11637169	11637369	-	1	NA	NA	NA	-5523	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.005000	0.487562	-30(GCCCTTAAAAAG,-,0.00),-28(CCTTAAAAAGGG,+,0.00),43(CCACATAAAAGC,-,0.00)
mm_77961.1	chr9	7695168	7695368	+	1	NA	NA	NA	363	NR_126562	102722	Mm.334941	NR_126562	ENSMUSG00000086381	AV064505	-	expressed sequence AV064505	ncRNA	0.000000	0.427861	
mm_155048.1	chrX	42150948	42151148	+	1	NA	NA	NA	347	NM_021465	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.030000	0.532338	
mm_8801.1	chr1	161834403	161834603	-	1	NA	NA	NA	42158	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.005000	0.363184	
mm_70049.1	chr7	142577989	142578189	-	1	NA	NA	NA	57	NR_130974	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.035000	0.646766	
mm_171079.1	chr3	121249852	121250052	-	1	NA	NA	NA	13364	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0.025000	0.467662	
mm_160015.1	chr6	129593634	129593834	+	1	NA	NA	NA	1923	NM_010654	16643	Mm.391515	NM_010654	ENSMUSG00000030165	Klrd1	CD94	killer cell lectin-like receptor, subfamily D, member 1	protein-coding	0.000000	0.278607	
mm_108250.1	chr12	78226598	78226798	+	1	NA	NA	NA	43	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.130000	0.751244	
mm_114147.1	chr13	55335868	55336068	+	1	NA	NA	NA	-6238	NM_016662	17121	Mm.20350	NM_016662	ENSMUSG00000021485	Mxd3	4631412E13Rik|Mad3|bHLHc13	Max dimerization protein 3	protein-coding	0.005000	0.542289	
mm_29407.1	chr3	108907980	108908180	-	1	NA	NA	NA	3624	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.010000	0.373134	-14(TCCCTTTAAAGG,-,0.00),-13(CCCTTTAAAGGT,+,0.00),-13(CCCTTTAAAGGT,-,0.00),-12(CCTTTAAAGGTT,+,0.00)
mm_91894.1	chr10	59951732	59951932	-	1	NA	NA	NA	-62	NM_029083	74747	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.080000	0.686567	-34(GCCCTTATAGGC,+,0.00),-34(GCCCTTATAGGC,-,0.00),-32(CCTTATAGGCTG,+,0.00)
mm_127531.1	chr15	102100309	102100509	+	1	NA	NA	NA	-2579	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.140000	0.796020	
mm_156583.1	chrX	152036308	152036508	+	1	NA	NA	NA	19980	NM_019710	24061	Mm.482095	NM_019710	ENSMUSG00000041133	Smc1a	5830426I24Rik|SMC-1A|Sb1.8|Smc1|Smc1alpha|Smc1l1|Smcb|mKIAA0178	structural maintenance of chromosomes 1A	protein-coding	0.020000	0.517413	
mm_143045.1	chr17	56874297	56874497	-	1	NA	NA	NA	50	NM_001039114	328845	Mm.179421	NM_001039114	ENSMUSG00000024207	Acsbg2	Bgr	acyl-CoA synthetase bubblegum family member 2	protein-coding	0.005000	0.537313	
mm_110313.1	chr12	33316550	33316750	-	1	NA	NA	NA	14135	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.010000	0.492537	
mm_111741.1	chr12	103895046	103895246	-	1	NA	NA	NA	9804	NM_009245	20702	Mm.439692	NM_009245	ENSMUSG00000079015	Serpina1c	Pi3|Pi6|Skalp|Spi1-3|Spi1-6|Wap3	serine (or cysteine) peptidase inhibitor, clade A, member 1C	protein-coding	0.020000	0.502488	
mm_23387.1	chr3	56575596	56575796	+	1	NA	NA	NA	-391995	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.015000	0.402985	
mm_130546.1	chr15	98953569	98953769	-	1	NA	NA	NA	-168	NM_011653	22142	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	0.025000	0.567164	85(CTGTATATAAGG,-,0.00)
mm_21319.1	chr2	157099097	157099297	-	1	NA	NA	NA	12142	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.015000	0.427861	
mm_135423.1	chr16	45224725	45224925	-	1	NA	NA	NA	488	NM_177584	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.005000	0.393035	
mm_900.1	chr1	53750041	53750241	+	1	NA	NA	NA	35074	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.005000	0.447761	
mm_34374.1	chr4	144893533	144893733	+	1	NA	NA	NA	496	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.090000	0.636816	
mm_132768.1	chr16	44765691	44765891	+	1	NA	NA	NA	55	NM_021325	57781	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.025000	0.527363	
mm_41695.1	chr5	100798653	100798853	+	1	NA	NA	NA	-6	NM_026826	68735	Mm.25585	NM_026826	ENSMUSG00000016833	Mrps18c	1110037D14Rik	mitochondrial ribosomal protein S18C	protein-coding	0.085000	0.601990	
mm_73927.1	chr8	119840637	119840837	+	1	NA	NA	NA	-158	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.060000	0.646766	
mm_54532.1	chr6	36715411	36715611	-	1	NA	NA	NA	95850	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.000000	0.293532	
mm_20695.1	chr2	132793435	132793635	-	1	NA	NA	NA	12257	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.025000	0.507463	
mm_45498.1	chr5	72168071	72168271	-	1	NA	NA	NA	12	NM_178599	27784	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.090000	0.646766	
mm_145175.1	chr18	46959510	46959710	+	1	NA	NA	NA	734	NM_178377	69456	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2	COMM domain containing 10	protein-coding	0.005000	0.417910	
mm_146753.1	chr18	16766184	16766384	-	1	NA	NA	NA	42962	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.000000	0.402985	-44(GTCTTTAAAAGA,-,0.00),-43(TCTTTAAAAGAG,+,0.00)
mm_36126.1	chr4	58986977	58987177	-	1	NA	NA	NA	1	NM_025968	67103	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	0.035000	0.552239	
mm_90105.1	chr10	117045255	117045455	+	1	NA	NA	NA	14	NM_146242	237560	Mm.37320	NM_146242	ENSMUSG00000060187	Lrrc10	D330003I11Rik|Hrlrrp|Serdin1	leucine rich repeat containing 10	protein-coding	0.035000	0.552239	
mm_127528.1	chr15	102095214	102095414	+	1	NA	NA	NA	-7674	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.035000	0.537313	
mm_35566.1	chr4	41640158	41640358	-	1	NA	NA	NA	44	NM_027147	69638	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.150000	0.736318	
mm_78096.1	chr9	18478270	18478470	+	1	NA	NA	NA	-25	NM_028557	73503	Mm.160088	NM_028557	ENSMUSG00000038691	Mbd3l1	1700070G05Rik|1700095H13Rik|Mbd3l	methyl-CpG binding domain protein 3-like 1	protein-coding	0.015000	0.398010	
mm_70280.1	chr8	3603285	3603485	+	1	NA	NA	NA	15935	NM_001347111	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.000000	0.512438	
mm_70661.1	chr8	14881472	14881672	+	1	NA	NA	NA	-6964	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.015000	0.507463	
mm_132050.1	chr16	29210079	29210279	+	1	NA	NA	NA	484	NM_013751	27281	Mm.103650	NM_013751	ENSMUSG00000022525	Hrasls	2810012B06Rik|A-C1|HRSL1|Hrasrs	HRAS-like suppressor	protein-coding	0.110000	0.726368	
mm_29107.1	chr3	104818456	104818656	-	1	NA	NA	NA	7	NM_001163440	17454	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0.050000	0.641791	
mm_147497.1	chr18	47415284	47415484	-	1	NA	NA	NA	-37284	NR_033453	77668	Mm.98433	NR_033453		9130209A04Rik	-	RIKEN cDNA 9130209A04 gene	ncRNA	0.025000	0.472637	
mm_93852.1	chr10	122047208	122047408	-	1	NA	NA	NA	7	NM_001242411	117600	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.080000	0.656716	
mm_128507.1	chr15	53258060	53258260	-	1	NA	NA	NA	88023	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.010000	0.378109	
mm_38961.1	chr4	150781320	150781520	-	1	NA	NA	NA	73529	NR_040649	73348	Mm.396218	NR_040649	ENSMUSG00000078492	1700045H11Rik	-	RIKEN cDNA 1700045H11 gene	ncRNA	0.010000	0.547264	
mm_15461.1	chr2	157447623	157447823	+	1	NA	NA	NA	23430	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.010000	0.477612	-46(TGGTTTTAAAGG,-,0.00),-45(GGTTTTAAAGGG,-,0.00)
mm_91625.1	chr10	41754818	41755018	-	1	NA	NA	NA	54745	NM_001243075	103268	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	0.025000	0.512438	-36(CCCTTTTAAAAG,-,0.00),-35(CCTTTTAAAAGC,+,0.00),-35(CCTTTTAAAAGC,-,0.00),-34(CTTTTAAAAGCT,+,0.00)
mm_70993.1	chr8	27447596	27447796	+	1	NA	NA	NA	26	NM_027618	70952	Mm.158160	NM_026256	ENSMUSG00000063932	Poteg	4921537P18Rik|4930456F22Rik|Gsarp1|Gsarp2	POTE ankyrin domain family, member G	protein-coding	0.025000	0.502488	
mm_167151.1	chr7	131322255	131322455	-	1	NA	NA	NA	-63	NM_008411	16433	Mm.142717	NM_008411	ENSMUSG00000040205	Cuzd1	Erg-1|Itmap1|Uo-44|Usg|Utczp	CUB and zona pellucida-like domains 1	protein-coding	0.010000	0.552239	
mm_36797.1	chr4	103120074	103120274	-	1	NA	NA	NA	784	NM_001039081	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.010000	0.422886	
mm_169025.1	chr13	113723697	113723897	+	1	NA	NA	NA	-60121	NM_019960	56534	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	0.035000	0.497512	
mm_85519.1	chr9	106447465	106447665	-	1	NA	NA	NA	113	NM_145919	68644	Mm.268925	NM_145919	ENSMUSG00000042210	Abhd14a	1110013B16Rik|AW558221|Dorz1	abhydrolase domain containing 14A	protein-coding	0.055000	0.646766	
mm_23700.1	chr3	68697928	68698128	+	1	NA	NA	NA	6604	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.030000	0.537313	
mm_155731.1	chrX	96165287	96165487	+	1	NA	NA	NA	69342	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.015000	0.492537	
mm_24454.1	chr3	90613187	90613387	+	1	NA	NA	NA	393	NM_011313	20200	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0.045000	0.621891	
mm_76564.1	chr8	88635988	88636188	-	1	NA	NA	NA	40	NM_027840	71607	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	0.015000	0.507463	
mm_109619.1	chr12	112763924	112764124	+	1	NA	NA	NA	3369	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.015000	0.587065	
mm_98223.1	chr11	88049473	88049673	+	1	NA	NA	NA	2200	NM_173374	110809	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	0.050000	0.472637	
mm_25588.1	chr3	116886077	116886277	+	1	NA	NA	NA	24497	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.015000	0.383085	
mm_67987.1	chr7	100855797	100855997	-	1	NA	NA	NA	7516	NM_177073	320100	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.005000	0.497512	89(TTTTAAAAAGCC,+,0.00)
mm_67749.1	chr7	92258597	92258797	-	1	NA	NA	NA	23727	NM_001243047	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.015000	0.402985	
mm_47266.1	chr5	121837504	121837704	-	1	NA	NA	NA	-745	NM_008507	16923	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.055000	0.611940	
mm_69743.1	chr7	140954859	140955059	-	1	NA	NA	NA	1002	NM_030694	80876	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.030000	0.517413	
mm_102869.1	chr11	69407543	69407743	-	1	NA	NA	NA	6032	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.015000	0.557214	-55(GGGCCTTAAAGG,-,0.00)
mm_167199.1	chr7	143068851	143069051	-	1	NA	NA	NA	-417	NM_020285	56844	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.040000	0.592040	
mm_110376.1	chr12	40203347	40203547	-	1	NA	NA	NA	-4132	NM_001033437	380755	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	0.015000	0.348259	
mm_84837.1	chr9	78368058	78368258	-	1	NA	NA	NA	41	NM_025274	434423	Mm.139314	NM_025274	ENSMUSG00000060461	Dppa5a	AA536857|Dppa5|Esg1|ecat2	developmental pluripotency associated 5A	protein-coding	0.050000	0.587065	
mm_92969.1	chr10	86123163	86123363	-	1	NA	NA	NA	27409	NR_038024	78170	Mm.444790	NR_038024		4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0.010000	0.477612	
mm_143637.1	chr17	79020606	79020806	-	1	NA	NA	NA	110	NM_001171004	75292	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	0.150000	0.706468	
mm_112552.1	chr13	12468629	12468829	+	1	NA	NA	NA	-6991	NM_001291057	56048	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.005000	0.447761	
mm_86242.1	chr9	121277089	121277289	-	1	NA	NA	NA	-17	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.090000	0.636816	
mm_64066.1	chr7	140881804	140882004	+	1	NA	NA	NA	-35	NM_001177804	64384	Mm.29760	NM_022433	ENSMUSG00000025486	Sirt3	2310003L23Rik|AI848213|Sir2l3	sirtuin 3	protein-coding	0.100000	0.706468	
mm_43602.1	chr5	137857129	137857329	+	1	NA	NA	NA	820	NM_133209	170741	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	0.025000	0.517413	
mm_72461.1	chr8	83251216	83251416	+	1	NA	NA	NA	-39032	NM_009463	22227	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	0.020000	0.407960	
mm_100811.1	chr11	5098967	5099167	-	1	NA	NA	NA	21	NM_001283062	14030	Mm.142822	NM_007968	ENSMUSG00000009079	Ewsr1	Ews|Ewsh	Ewing sarcoma breakpoint region 1	protein-coding	0.135000	0.681592	
mm_148566.1	chr19	4756750	4756950	+	1	NA	NA	NA	325	NM_025717	66704	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	0.060000	0.631841	
mm_3230.1	chr1	135849361	135849561	+	1	NA	NA	NA	8600	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.025000	0.557214	
mm_106536.1	chr11	120578610	120578810	-	1	NA	NA	NA	2910	NM_133796	192662	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.035000	0.592040	
mm_62362.1	chr7	100537075	100537275	+	1	NA	NA	NA	75	NM_183270	68185	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	0.100000	0.661692	
mm_55424.1	chr6	65144635	65144835	-	1	NA	NA	NA	-5	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.020000	0.497512	-55(GCTTTTAGGTGG,+,0.00)
mm_129851.1	chr15	83172087	83172287	-	1	NA	NA	NA	21	NM_029787	109754	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.095000	0.706468	
mm_169804.1	chr16	18360669	18360869	+	1	NA	NA	NA	12587	NM_001272029	11877	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velo-cardio-facial syndrome	protein-coding	0.015000	0.497512	
mm_43688.1	chr5	138994952	138995152	+	1	NA	NA	NA	-99	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.110000	0.716418	
mm_165263.1	chr2	73660323	73660523	-	1	NA	NA	NA	0	NM_175752	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	0.025000	0.517413	
mm_17946.1	chr2	36136457	36136657	-	1	NA	NA	NA	147	NM_026434	67889	Mm.205937	NM_026434	ENSMUSG00000026889	Rbm18	2010004P11Rik|AU015530	RNA binding motif protein 18	protein-coding	0.110000	0.676617	
mm_69799.1	chr7	141172696	141172896	-	1	NA	NA	NA	55	NM_001172100	107702	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.075000	0.587065	
mm_169246.1	chr13	74864723	74864923	+	1	NA	NA	NA	-56063	NM_001301153	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.000000	0.383085	
mm_136654.1	chr17	5975653	5975853	+	1	NA	NA	NA	167	NM_011523	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.040000	0.522388	
mm_123949.1	chr14	73385168	73385368	-	1	NA	NA	NA	3	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.125000	0.766169	
mm_50054.1	chr6	41178228	41178428	+	1	NA	NA	NA	-123944	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.005000	0.482587	-48(CCATTTATAAAC,+,0.00)
mm_161827.1	chr17	79614663	79614863	+	1	NA	NA	NA	-137	NM_201361	381110	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.005000	0.412935	-43(GGGCATTTAAGC,-,0.00)
mm_75681.1	chr8	68062195	68062395	-	1	NA	NA	NA	-87721	NM_177698	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.200000	0.830846	
mm_142677.1	chr17	47732353	47732553	-	1	NA	NA	NA	-4584	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.040000	0.572139	
mm_81866.1	chr9	118959640	118959840	+	1	NA	NA	NA	33204	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.025000	0.283582	1(GCTTTTAGGTGG,+,0.00)
mm_96729.1	chr11	69684457	69684657	+	1	NA	NA	NA	997	NM_001159505	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.030000	0.547264	
mm_78990.1	chr9	45402521	45402721	+	1	NA	NA	NA	-517	NM_052823	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.000000	0.567164	
mm_34154.1	chr4	139390741	139390941	+	1	NA	NA	NA	10182	NM_001160319	69116	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0.025000	0.527363	
mm_22888.1	chr3	30647868	30648068	+	1	NA	NA	NA	82	NM_001290510	68307	Mm.389425	NM_026668	ENSMUSG00000027703	Lrriq4	4930558O21Rik	leucine-rich repeats and IQ motif containing 4	protein-coding	0.030000	0.537313	
mm_8891.1	chr1	162898236	162898436	-	1	NA	NA	NA	376	NM_018881	55990	Mm.10929	NM_018881	ENSMUSG00000040170	Fmo2	2310008D08Rik|2310042I22Rik|AW107733	flavin containing monooxygenase 2	protein-coding	0.015000	0.472637	
mm_4490.1	chr1	173633580	173633780	+	1	NA	NA	NA	2821	NM_175026	236312	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	0.005000	0.422886	
mm_60844.1	chr7	45785261	45785461	+	1	NA	NA	NA	-19	NM_001290990	381983	Mm.44928	NM_001005511	ENSMUSG00000062044	Lmtk3	BC059845|aatyk3	lemur tyrosine kinase 3	protein-coding	0.045000	0.661692	
mm_46641.1	chr5	108548506	108548706	-	1	NA	NA	NA	1421	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.010000	0.532338	
mm_159402.1	chr3	98509945	98510145	-	1	NA	NA	NA	427	NM_001111336	15495	Mm.14309	NM_008294	ENSMUSG00000095143	Hsd3b4	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	protein-coding	0.005000	0.437811	
mm_5966.1	chr1	56978418	56978618	-	1	NA	NA	NA	7049	NR_024325	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0.050000	0.552239	
mm_108057.1	chr12	73927269	73927469	+	1	NA	NA	NA	19502	NM_001313919	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.005000	0.263682	57(TTTTTTAAACAC,+,0.00)
mm_154563.1	chrX	6399993	6400193	+	1	NA	NA	NA	61	NM_001040459	208431	Mm.23208	NM_001040459	ENSMUSG00000068270	Shroom4	D430043L16Rik|Gm724|Shrm4	shroom family member 4	protein-coding	0.120000	0.751244	
mm_155600.1	chrX	82814803	82815003	+	1	NA	NA	NA	-133967	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.015000	0.437811	
mm_159804.1	chr5	114131681	114131881	+	1	NA	NA	NA	625	NM_011677	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.035000	0.502488	
mm_45886.1	chr5	88526401	88526601	-	1	NA	NA	NA	1396	NM_152839	16069	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	0.000000	0.412935	
mm_120839.1	chr14	75180127	75180327	+	1	NA	NA	NA	43802	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.010000	0.348259	
mm_139380.1	chr17	51859497	51859697	+	1	NA	NA	NA	-23130	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.015000	0.412935	
mm_146492.1	chr18	90579708	90579908	+	1	NA	NA	NA	69654	NM_198295	67988	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.040000	0.547264	
mm_25948.1	chr3	131564799	131564999	+	1	NA	NA	NA	131	NM_011863	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.085000	0.691542	
mm_59435.1	chr7	27131106	27131306	+	1	NA	NA	NA	11251	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.065000	0.582090	
mm_55276.1	chr6	54158507	54158707	-	1	NA	NA	NA	-106251	NM_001311133	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.010000	0.487562	
mm_79865.1	chr9	65077785	65077985	+	1	NA	NA	NA	-23601	NM_001290315	56741	Mm.209041	NM_020043	ENSMUSG00000032816	Igdcc4	DDM36|Nope	immunoglobulin superfamily, DCC subclass, member 4	protein-coding	0.020000	0.492537	
mm_40769.1	chr5	67054670	67054870	+	1	NA	NA	NA	44356	NM_008888	18935	Mm.62505	NM_008888	ENSMUSG00000012520	Phox2b	Dilp1|NBPhox|Pmx2b|Px2b	paired-like homeobox 2b	protein-coding	0.010000	0.388060	
mm_158991.1	chr1	134332759	134332959	-	1	NA	NA	NA	69	NM_001144855	68507	Mm.295105	NM_001144855	ENSMUSG00000026458	Ppfia4	100042382|1110008G13Rik|AI448359|AI852265|C81506|Gm3812	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	protein-coding	0.025000	0.621891	
mm_5032.1	chr1	193301914	193302114	+	1	NA	NA	NA	20	NM_008484	16780	Mm.435441	NM_008484	ENSMUSG00000026639	Lamb3	-	laminin, beta 3	protein-coding	0.015000	0.606965	
mm_70796.1	chr8	22757628	22757828	+	1	NA	NA	NA	6	NM_008872	18791	Mm.154660	NM_008872	ENSMUSG00000031538	Plat	AU020998|AW212668|D8Ertd2e|tPA	plasminogen activator, tissue	protein-coding	0.020000	0.587065	
mm_138658.1	chr17	35868419	35868619	+	1	NA	NA	NA	1904	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.045000	0.691542	
mm_120388.1	chr14	64590315	64590515	+	1	NA	NA	NA	-242	NR_029813	387233		NR_029813	ENSMUSG00000065597	Mir124a-1	Mirn124a|Mirn124a-1	microRNA 124a-1	ncRNA	0.060000	0.557214	
mm_63805.1	chr7	133309654	133309854	+	1	NA	NA	NA	181503	NR_046279	74970	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	0.010000	0.313433	
mm_150220.1	chr19	33961060	33961260	+	1	NA	NA	NA	-88	NM_026334	67717	Mm.329816	NM_026334	ENSMUSG00000024768	Lipf	2310051B21Rik|AV082900	lipase, gastric	protein-coding	0.000000	0.363184	53(TGGTATATAAGG,-,0.00)
mm_165139.1	chr2	11521937	11522137	+	1	NA	NA	NA	-19947	NM_001177757	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.020000	0.587065	
mm_99135.1	chr11	100319947	100320147	+	1	NA	NA	NA	98	NM_011508	20918	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.110000	0.671642	-94(GGCTATATAAGT,-,0.00)
mm_428.1	chr1	34472687	34472887	+	1	NA	NA	NA	13041	NM_011206	19253	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.085000	0.706468	
mm_60735.1	chr7	45437921	45438121	+	1	NA	NA	NA	3182	NM_030678	14936	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0.030000	0.592040	
mm_70209.1	chr7	144857197	144857397	-	1	NA	NA	NA	-4089	NM_010202	14175	Mm.4956	NM_010202	ENSMUSG00000050917	Fgf4	Fgf-4|Fgfk|HBGF-4|Hst1|Hstf-1|KS3|hst|hst-1|kFGF	fibroblast growth factor 4	protein-coding	0.015000	0.547264	
mm_71844.1	chr8	68904891	68905091	+	1	NA	NA	NA	24436	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.358209	
mm_16749.1	chr2	9857333	9857533	-	1	NA	NA	NA	21167	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.000000	0.248756	
mm_117746.1	chr13	95891817	95892017	-	1	NA	NA	NA	5	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.140000	0.731343	
mm_38693.1	chr4	145213619	145213819	-	1	NA	NA	NA	-18714	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.010000	0.447761	
mm_4606.1	chr1	178448580	178448780	+	1	NA	NA	NA	42799	NM_026626	68226	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.020000	0.477612	
mm_73422.1	chr8	106107357	106107557	+	1	NA	NA	NA	-27943	NR_040345	69771	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.000000	0.358209	
mm_32919.1	chr4	119136683	119136883	+	1	NA	NA	NA	28038	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.010000	0.467662	
mm_13111.1	chr2	91546217	91546417	+	1	NA	NA	NA	-5	NM_001165989	75786	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0.000000	0.328358	
mm_30620.1	chr4	8690326	8690526	+	1	NA	NA	NA	20	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.240000	0.875622	
mm_34258.1	chr4	141420132	141420332	+	1	NA	NA	NA	-547	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.010000	0.577114	
mm_121088.1	chr14	99298867	99299067	+	1	NA	NA	NA	276	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.140000	0.771144	
mm_151962.1	chr19	5801538	5801738	-	1	NA	NA	NA	1034	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.368159	
mm_7516.1	chr1	124045157	124045357	-	1	NA	NA	NA	302	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.030000	0.601990	
mm_309.1	chr1	24177600	24177800	+	1	NA	NA	NA	90	NM_007740	12839	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding	0.010000	0.567164	-36(CAGCTTAAAGGG,-,0.00)
mm_33108.1	chr4	124714744	124714944	+	1	NA	NA	NA	-17	NM_029157	75062	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	0.080000	0.572139	
mm_7551.1	chr1	124592193	124592393	-	1	NA	NA	NA	-546734	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.388060	-95(GTTTAAATAGTG,+,0.00),14(GCTTATAGGGGG,+,0.00)
mm_86018.1	chr9	112235377	112235577	-	1	NA	NA	NA	-636	NM_001177619	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.085000	0.666667	
mm_39230.1	chr4	156228702	156228902	-	1	NA	NA	NA	-260	NM_001008233	231002	Mm.423124	NM_001008233	ENSMUSG00000078485	Plekhn1	BC025458	pleckstrin homology domain containing, family N member 1	protein-coding	0.015000	0.572139	
mm_47237.1	chr5	121452278	121452478	-	1	NA	NA	NA	96	NM_026129	67397	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	0.125000	0.721393	
mm_4115.1	chr1	167689430	167689630	+	1	NA	NA	NA	-28	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding	0.045000	0.567164	
mm_101095.1	chr11	11890274	11890474	-	1	NA	NA	NA	34	NM_016672	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.025000	0.517413	
mm_112901.1	chr13	20899154	20899354	+	1	NA	NA	NA	105141	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.472637	
mm_52631.1	chr6	117174258	117174458	+	1	NA	NA	NA	5823	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.005000	0.507463	
mm_164491.1	chr16	88758748	88758948	+	1	NA	NA	NA	1	NM_054100	117172	Mm.160339	NM_054100	ENSMUSG00000068078	2310034C09Rik	-	RIKEN cDNA 2310034C09 gene	protein-coding	0.015000	0.492537	-33(GAGTATATAAAC,-,0.00)
mm_47118.1	chr5	119671265	119671465	-	1	NA	NA	NA	132	NM_011535	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.075000	0.542289	-84(TCCTTTAAAAAA,-,0.00)
mm_709.1	chr1	40805535	40805735	+	1	NA	NA	NA	34	NM_001081198	381339	Mm.334678	NM_001081198	ENSMUSG00000079588	Tmem182	2310079P10Rik|AI414494	transmembrane protein 182	protein-coding	0.015000	0.517413	
mm_9339.1	chr1	172027160	172027360	-	1	NA	NA	NA	35	NM_033509	93840	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	vang-like 2 (van gogh, Drosophila)	protein-coding	0.055000	0.716418	
mm_156181.1	chrX	130461747	130461947	+	1	NA	NA	NA	712105	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.000000	0.417910	
mm_172886.1	chr9	53689950	53690150	-	1	NA	NA	NA	16182	NM_175562	270160	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0.035000	0.532338	
mm_66804.1	chr7	47204854	47205054	-	1	NA	NA	NA	-15538	NR_131899	381886	Mm.377894	NM_205821		Mrgpra6	MrgA6	MAS-related GPR, member A6	protein-coding	0.010000	0.432836	
mm_156313.1	chrX	136993082	136993282	+	1	NA	NA	NA	27	NM_001035509	66995	Mm.440155	NM_025893	ENSMUSG00000031428	Zcchc18	1500031H04Rik|Sizn2	zinc finger, CCHC domain containing 18	protein-coding	0.055000	0.621891	
mm_4293.1	chr1	171767057	171767257	+	1	NA	NA	NA	25	NM_013730	27218	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	0.025000	0.522388	
mm_143667.1	chr17	79891033	79891233	-	1	NA	NA	NA	4990	NM_178050	56298	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.015000	0.507463	
mm_136738.1	chr17	8340368	8340568	+	1	NA	NA	NA	62	NR_028280	320111	Mm.442510	NM_178774	ENSMUSG00000055945	Prr18	9630019K15Rik	proline rich 18	protein-coding	0.025000	0.532338	
mm_14123.1	chr2	125947753	125947953	+	1	NA	NA	NA	81630	NM_001291002	69976	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	0.000000	0.343284	
mm_143119.1	chr17	57209534	57209734	-	1	NA	NA	NA	7594	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.015000	0.547264	
mm_30282.1	chr3	148948811	148949011	-	1	NA	NA	NA	5724	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.025000	0.333333	
mm_138515.1	chr17	35237716	35237916	+	1	NA	NA	NA	1220	NM_023179	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.040000	0.552239	
mm_14329.1	chr2	129371386	129371586	+	1	NA	NA	NA	-347	NM_008361	16176	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	0.015000	0.462687	
mm_149374.1	chr19	11375408	11375608	+	1	NA	NA	NA	20	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.010000	0.437811	
mm_60206.1	chr7	43437053	43437253	+	1	NA	NA	NA	15	NM_024253	72310	Mm.34613	NM_024253	ENSMUSG00000004612	Nkg7	2500004F03Rik	natural killer cell group 7 sequence	protein-coding	0.020000	0.532338	
mm_72682.1	chr8	84949780	84949980	+	1	NA	NA	NA	2889	NM_144929	234542	Mm.461701	NM_144929	ENSMUSG00000048617	Rtbdn	A330096I21Rik|BC022744|Rtbnd	retbindin	protein-coding	0.020000	0.547264	
mm_129535.1	chr15	79328073	79328273	-	1	NA	NA	NA	198	NM_016915	53357	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0.085000	0.641791	
mm_151001.1	chr19	46654020	46654220	+	1	NA	NA	NA	18880	NM_007809	13074	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.045000	0.671642	
mm_30227.1	chr3	145649607	145649807	-	1	NA	NA	NA	278	NM_010516	16007	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0.055000	0.537313	
mm_22641.1	chr3	14864068	14864268	+	1	NA	NA	NA	630	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.000000	0.407960	
mm_96880.1	chr11	70221132	70221332	+	1	NA	NA	NA	-238	NM_172371	69309	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	0.020000	0.537313	
mm_148696.1	chr19	5741797	5741997	+	1	NA	NA	NA	993	NM_008520	16998	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0.115000	0.781095	
mm_79960.1	chr9	66349976	66350176	+	1	NA	NA	NA	-374	NM_145617	235439	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.075000	0.611940	
mm_156204.1	chrX	134426968	134427168	+	1	NA	NA	NA	22288	NM_010078	13497	Mm.121662	NM_010078	ENSMUSG00000000223	Drp2	AW495265|DRP-2	dystrophin related protein 2	protein-coding	0.015000	0.597015	
mm_50418.1	chr6	48747841	48748041	+	1	NA	NA	NA	1744	NM_175035	317757	Mm.455917	NM_175035	ENSMUSG00000043505	Gimap5	D630024P16|E230026N22Rik	GTPase, IMAP family member 5	protein-coding	0.000000	0.393035	
mm_21710.1	chr2	164593458	164593658	-	1	NA	NA	NA	13	NM_029325	75526	Mm.159533	NM_029325	ENSMUSG00000017733	Eppin	1700024E17Rik|Spinlw1	epididymal peptidase inhibitor	protein-coding	0.015000	0.512438	
mm_38362.1	chr4	138138369	138138569	-	1	NA	NA	NA	49	NR_126429	73563	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	0.010000	0.527363	
mm_34055.1	chr4	138304708	138304908	+	1	NA	NA	NA	70	NM_007838	13200	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	0.120000	0.726368	
mm_148686.1	chr19	5704353	5704553	+	1	NA	NA	NA	-18	NM_010609	16530	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	0.030000	0.636816	
mm_86745.1	chr10	19356462	19356662	+	1	NA	NA	NA	23	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20|oligo3	oligodendrocyte transcription factor 3	protein-coding	0.015000	0.422886	
mm_164733.1	chr17	66320394	66320594	+	1	NA	NA	NA	129256	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.020000	0.467662	
mm_120713.1	chr14	72634255	72634455	+	1	NA	NA	NA	75648	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.005000	0.402985	
mm_41312.1	chr5	90469431	90469631	+	1	NA	NA	NA	8661	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.427861	
mm_63451.1	chr7	127511997	127512197	+	1	NA	NA	NA	114	NM_001304266	100043597	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	0.115000	0.656716	
mm_33343.1	chr4	129287630	129287830	+	1	NA	NA	NA	109	NM_023485	68828	Mm.132243	NM_023485	ENSMUSG00000001333	Sync	1110057H03Rik|SNIP4	syncoilin	protein-coding	0.130000	0.721393	
mm_79413.1	chr9	55208865	55209065	+	1	NA	NA	NA	30	NM_028049	71999	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	0.115000	0.726368	
mm_30769.1	chr4	17853164	17853364	+	1	NA	NA	NA	-194	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.075000	0.641791	
mm_51361.1	chr6	72636132	72636332	+	1	NA	NA	NA	6401	NR_040421	100038714	Mm.321330	NR_040421		Gm15401	ENSMUSG00000072999|OTTMUSG00000021199	predicted gene 15401	ncRNA	0.015000	0.517413	
mm_110185.1	chr12	27338238	27338438	-	1	NA	NA	NA	4380	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.020000	0.422886	
mm_3761.1	chr1	156052361	156052561	+	1	NA	NA	NA	11600	NM_022329	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.000000	0.412935	
mm_9964.1	chr1	191176620	191176820	-	1	NA	NA	NA	6613	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.000000	0.452736	
mm_45932.1	chr5	89676800	89677000	-	1	NA	NA	NA	60464	NR_037571	631105	Mm.7732	NR_037571		Gm7056	Gm149	predicted gene 7056	ncRNA	0.010000	0.313433	
mm_66003.1	chr7	30562823	30563023	-	1	NA	NA	NA	261	NM_025498	66340	Mm.86557	NM_025498	ENSMUSG00000036835	Psenen	1700023M09Rik|Pen-2	presenilin enhancer gamma secretase subunit	protein-coding	0.055000	0.537313	
mm_42624.1	chr5	118245158	118245358	+	1	NA	NA	NA	31	NM_001081236	76792	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0.100000	0.686567	
mm_33138.1	chr4	125066628	125066828	+	1	NA	NA	NA	35	NM_175246	76793	Mm.22548	NM_175246	ENSMUSG00000050213	Snip1	2410133M08Rik	Smad nuclear interacting protein 1	protein-coding	0.130000	0.671642	
mm_27640.1	chr3	63851171	63851371	-	1	NA	NA	NA	-280	NM_001177732	269437	Mm.316391	NM_183191	ENSMUSG00000036834	Plch1	BC042549|PLC-eta-1|PLCeta1|Plcl3	phospholipase C, eta 1	protein-coding	0.020000	0.467662	
mm_122380.1	chr14	40893130	40893330	-	1	NA	NA	NA	-265	NM_177816	328381	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.005000	0.467662	
mm_72331.1	chr8	79028181	79028381	+	1	NA	NA	NA	-156	NM_001294279	622675	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.095000	0.606965	
mm_24712.1	chr3	95228239	95228439	+	1	NA	NA	NA	-85	NM_172395	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.070000	0.641791	
mm_135475.1	chr16	45937383	45937583	-	1	NA	NA	NA	72930	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.005000	0.482587	
mm_149483.1	chr19	11770352	11770552	+	1	NA	NA	NA	37	NM_025606	94063	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	0.070000	0.562189	
mm_105828.1	chr11	113172910	113173110	-	1	NA	NA	NA	28828	NR_015556	72386	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.030000	0.512438	
mm_92877.1	chr10	82492544	82492744	-	1	NA	NA	NA	-26	NM_001255990	432480	Mm.280394	NM_001255990	ENSMUSG00000094186	Gm1553	Lcrn	predicted gene 1553	protein-coding	0.010000	0.383085	
mm_29115.1	chr3	104961577	104961777	-	1	NA	NA	NA	32	NM_009520	22414	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.120000	0.741294	
mm_16207.1	chr2	173062184	173062384	+	1	NA	NA	NA	40382	NM_019547	56190	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.005000	0.562189	
mm_67111.1	chr7	70359840	70360040	-	1	NA	NA	NA	653	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.080000	0.621891	
mm_3919.1	chr1	162221197	162221397	+	1	NA	NA	NA	-2071	NR_029796	387210		NR_029796	ENSMUSG00000065516	Mir214	Mirn214|mir-214|mmu-mir-214	microRNA 214	ncRNA	0.000000	0.318408	
mm_108437.1	chr12	82339612	82339812	+	1	NA	NA	NA	28363	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.020000	0.532338	
mm_88338.1	chr10	75589254	75589454	+	1	NA	NA	NA	-27	NM_011820	23887	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	0.020000	0.547264	
mm_98660.1	chr11	96271537	96271737	+	1	NA	NA	NA	307	NM_008270	15417	Mm.258271	NM_008270	ENSMUSG00000020875	Hoxb9	Hox-2.5	homeobox B9	protein-coding	0.110000	0.636816	
mm_43876.1	chr5	143732501	143732701	+	1	NA	NA	NA	-321	NM_029749	76800	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0.075000	0.661692	
mm_22141.1	chr2	171962721	171962921	-	1	NA	NA	NA	-22	NR_040509	75655	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	0.040000	0.572139	
mm_142132.1	chr17	35909135	35909335	-	1	NA	NA	NA	833	NM_001142745	73242	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	0.025000	0.502488	
mm_37301.1	chr4	119232625	119232825	-	1	NA	NA	NA	-1	NM_001012400	230696	Mm.473722	NM_001012400	ENSMUSG00000078584	AU022252	AI450326	expressed sequence AU022252	protein-coding	0.070000	0.582090	
mm_119127.1	chr14	31138237	31138437	+	1	NA	NA	NA	3484	NM_027289	70021	Mm.261681	NM_027289	ENSMUSG00000071547	Nt5dc2	2510015F01Rik	5'-nucleotidase domain containing 2	protein-coding	0.055000	0.691542	
mm_42338.1	chr5	114903553	114903753	+	1	NA	NA	NA	6719	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.015000	0.407960	-90(AACTATTAAAGC,-,0.00)
mm_140004.1	chr17	73107931	73108131	+	1	NA	NA	NA	46	NM_001177967	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.110000	0.671642	
mm_49707.1	chr6	34412096	34412296	+	1	NA	NA	NA	-166	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.010000	0.452736	
mm_58461.1	chr7	3366082	3366282	+	1	NA	NA	NA	-27860	NM_133190	81905	Mm.357990	NM_133190	ENSMUSG00000053395	Cacng8	-	calcium channel, voltage-dependent, gamma subunit 8	protein-coding	0.010000	0.522388	
mm_15157.1	chr2	154009070	154009270	+	1	NA	NA	NA	894	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.005000	0.437811	
mm_79196.1	chr9	48495116	48495316	+	1	NA	NA	NA	114	NM_001326355	67010	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	0.080000	0.676617	
mm_81730.1	chr9	113726317	113726517	+	1	NA	NA	NA	-15056	NM_001286599	76499	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.010000	0.487562	-92(GACCATATATGG,-,0.00),-90(CCATATATGGGC,+,0.00),-33(AGCTATAAAAAG,-,0.00)
mm_11743.1	chr2	38350970	38351170	+	1	NA	NA	NA	-238	NM_010710	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.135000	0.731343	-35(CTGTAGAAAAGG,-,0.00)
mm_126621.1	chr15	83154112	83154312	+	1	NA	NA	NA	4567	NR_004432	104307	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.000000	0.502488	
mm_76012.1	chr8	72998247	72998447	-	1	NA	NA	NA	-18165	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	0.010000	0.308458	
mm_47982.1	chr5	135911379	135911579	-	1	NA	NA	NA	23162	NM_018871	22628	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.075000	0.606965	
mm_163882.1	chr14	21856931	21857131	+	1	NA	NA	NA	-8121	NM_026965	69156	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0.035000	0.577114	
mm_127381.1	chr15	100870844	100871044	+	1	NA	NA	NA	299	NM_001077499	20273	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	0.195000	0.830846	
mm_72129.1	chr8	71789153	71789353	+	1	NA	NA	NA	-63572	NM_028715	74015	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.015000	0.577114	
mm_81738.1	chr9	113792887	113793087	+	1	NA	NA	NA	-343	NM_001286603	76499	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.005000	0.373134	-32(TTTTTTAAAAGG,-,0.00),86(GCATTAAAAGTC,+,0.00)
mm_10928.1	chr2	25456740	25456940	+	1	NA	NA	NA	-3	NM_027085	69454	Mm.44194	NM_027085	ENSMUSG00000015093	Clic3	2300003G24Rik	chloride intracellular channel 3	protein-coding	0.020000	0.636816	
mm_23051.1	chr3	35721162	35721362	+	1	NA	NA	NA	-32876	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.010000	0.383085	-58(GACTCTATAAGT,-,0.00)
mm_14739.1	chr2	144368775	144368975	+	1	NA	NA	NA	-108	NM_001164813	100048644	Mm.227925	NM_001164813	ENSMUSG00000098387	Pet117	Gm20571	PET117 homolog	protein-coding	0.080000	0.641791	
mm_161009.1	chr11	118443304	118443504	+	1	NA	NA	NA	-130	NM_001204130	56745	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.020000	0.552239	
mm_122366.1	chr14	39388297	39388497	-	1	NA	NA	NA	-84032	NR_131973	432842	Mm.352566	NR_131973		LOC432842	-	uncharacterized LOC432842	ncRNA	0.005000	0.343284	
mm_154691.1	chrX	8047097	8047297	+	1	NA	NA	NA	27116	NM_001290716	20937	Mm.9244	NM_011514	ENSMUSG00000039231	Suv39h1	AI852103|AL022883|DXHXS7466e|H3-K9-HMTase 1|KMT1A|mIS6	suppressor of variegation 3-9 homolog 1 (Drosophila)	protein-coding	0.040000	0.512438	-28(CACTTTAAAAGT,-,0.00)
mm_65710.1	chr7	28378077	28378277	-	1	NA	NA	NA	1051	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.065000	0.592040	
mm_171083.1	chr3	122276176	122276376	+	1	NA	NA	NA	1862	NM_153806	99480	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	0.025000	0.507463	
mm_154477.1	chrM	4203	4403	-	1	NA	NA	NA	NA	NA									0.010000	0.358209	
mm_157207.1	chrX	12761713	12761913	-	1	NA	NA	NA	160	NM_012005	26896	Mm.17616	NM_012005	ENSMUSG00000064127	Med14	9930001L01Rik|AU041628|Crsp2|ENSMUSG00000073278|Gm641|ORF1|Trap170	mediator complex subunit 14	protein-coding	0.125000	0.786070	
mm_29522.1	chr3	116594729	116594929	-	1	NA	NA	NA	-129	NM_001289568	72776	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	0.090000	0.626866	
mm_49792.1	chr6	35252576	35252776	+	1	NA	NA	NA	-23	NR_015608	67705	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	0.110000	0.721393	
mm_40683.1	chr5	65578913	65579113	+	1	NA	NA	NA	41768	NM_001310619	53323	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.010000	0.333333	
mm_46136.1	chr5	92675758	92675958	-	1	NA	NA	NA	-731	NM_177230	320696	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	0.045000	0.462687	
mm_96919.1	chr11	70468907	70469107	+	1	NA	NA	NA	-9023	NM_023158	66102	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.000000	0.378109	
mm_143488.1	chr17	71310836	71311036	-	1	NA	NA	NA	29	NM_145158	246707	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.110000	0.716418	
mm_32821.1	chr4	117496342	117496542	+	1	NA	NA	NA	610	NM_025739	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.060000	0.597015	
mm_19593.1	chr2	102137877	102138077	-	1	NA	NA	NA	48483	NM_178886	241576	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.020000	0.517413	
mm_7206.1	chr1	93072998	93073198	-	1	NA	NA	NA	9382	NM_001294150	16560	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.010000	0.547264	
mm_162235.1	chrX	152367897	152368097	-	1	NA	NA	NA	-575	NR_045451	75693	Mm.287381	NR_045451	ENSMUSG00000084885	3010001F23Rik	-	RIKEN cDNA 3010001F23 gene	ncRNA	0.000000	0.472637	
mm_80095.1	chr9	70250482	70250682	+	1	NA	NA	NA	43232	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.025000	0.507463	
mm_29241.1	chr3	107215962	107216162	-	1	NA	NA	NA	5670	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.452736	
mm_139481.1	chr17	56040240	56040440	+	1	NA	NA	NA	-76	NM_013733	27221	Mm.391010	NM_013733	ENSMUSG00000002835	Chaf1a	AL023013|AL024058|CAF-1|Cac1p	chromatin assembly factor 1, subunit A (p150)	protein-coding	0.130000	0.646766	
mm_42383.1	chr5	114933572	114933772	+	1	NA	NA	NA	-8530	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.040000	0.532338	
mm_111635.1	chr12	102591216	102591416	-	1	NA	NA	NA	36375	NM_007693	12652	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	0.010000	0.442786	
mm_159059.1	chr2	4152772	4152972	+	1	NA	NA	NA	9	NM_172475	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.045000	0.592040	
mm_142933.1	chr17	56000068	56000268	-	1	NA	NA	NA	5438	NM_145934	106766	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	0.050000	0.587065	
mm_156087.1	chrX	110814336	110814536	+	1	NA	NA	NA	57	NM_008901	18994	Mm.56946	NM_008901	ENSMUSG00000056854	Pou3f4	Brn-4|Brn4|OTF-9|Otf9|Slf|oct-9	POU domain, class 3, transcription factor 4	protein-coding	0.065000	0.592040	
mm_41399.1	chr5	90786003	90786203	+	1	NA	NA	NA	2	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.045000	0.656716	-35(ATGTATAAAAGG,-,0.00)
mm_46765.1	chr5	112267258	112267458	-	1	NA	NA	NA	-9333	NM_001326590	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.025000	0.537313	
mm_65225.1	chr7	19710141	19710341	-	1	NA	NA	NA	5188	NM_001109748	53333	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40 homolog (yeast)	protein-coding	0.010000	0.502488	
mm_47156.1	chr5	120634185	120634385	-	1	NA	NA	NA	-50	NM_001195094	546886	Mm.464847	NM_001195094	ENSMUSG00000094282	Cfap73	Ccdc42b|Gm5988	cilia and flagella associated protein 73	protein-coding	0.025000	0.577114	
mm_12987.1	chr2	90885324	90885524	+	1	NA	NA	NA	-362	NM_026161	67445	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0.010000	0.512438	
mm_147175.1	chr18	36744356	36744556	-	1	NA	NA	NA	131	NM_010885	17991	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	0.085000	0.616915	
mm_117297.1	chr13	67011430	67011630	-	1	NA	NA	NA	20875	NR_045851	71226	Mm.399574	NR_045851		4933433G19Rik	-	RIKEN cDNA 4933433G19 gene	ncRNA	0.000000	0.417910	
mm_137020.1	chr17	17849935	17850135	+	1	NA	NA	NA	5153	NM_008215	15116	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase1	protein-coding	0.095000	0.661692	
mm_40056.1	chr5	33996317	33996517	+	1	NA	NA	NA	433	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.090000	0.681592	
mm_7677.1	chr1	128589098	128589298	-	1	NA	NA	NA	3101	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.030000	0.532338	
mm_118299.1	chr13	113079095	113079295	-	1	NA	NA	NA	21786	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.025000	0.482587	
mm_68698.1	chr7	119620298	119620498	-	1	NA	NA	NA	2570	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.000000	0.427861	87(CCTTTTCAACAC,+,0.00)
mm_84597.1	chr9	70037948	70038148	-	1	NA	NA	NA	40	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.005000	0.482587	11(CTCTTTATAAGG,-,0.00),13(CTTTATAAGGGA,+,0.00)
mm_63824.1	chr7	134735839	134736039	+	1	NA	NA	NA	65252	NM_001033420	330662	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik	dedicator of cytokinesis 1	protein-coding	0.000000	0.343284	
mm_41957.1	chr5	105876121	105876321	+	1	NA	NA	NA	-347	NR_030777	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.015000	0.507463	
mm_53936.1	chr6	4756507	4756707	-	1	NA	NA	NA	9301	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.025000	0.492537	
mm_86428.1	chr10	3859585	3859785	+	1	NA	NA	NA	-12982	NM_001033253	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.015000	0.407960	
mm_136462.1	chr16	95349703	95349903	-	1	NA	NA	NA	92245	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.020000	0.512438	
mm_14368.1	chr2	129629887	129630087	+	1	NA	NA	NA	36818	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.020000	0.522388	-68(TCTTTTAGATCC,+,0.00)
mm_118093.1	chr13	103845495	103845695	-	1	NA	NA	NA	74991	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.010000	0.368159	
mm_81251.1	chr9	107976809	107977009	+	1	NA	NA	NA	1342	NM_023738	74153	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0.015000	0.512438	
mm_49662.1	chr6	31216819	31217019	+	1	NA	NA	NA	1555	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.090000	0.656716	
mm_29803.1	chr3	127780395	127780595	-	1	NA	NA	NA	32	NM_027808	71481	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	0.035000	0.487562	
mm_44907.1	chr5	35663404	35663604	-	1	NA	NA	NA	16276	NM_001042615	78558	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.005000	0.402985	
mm_36106.1	chr4	58839831	58840031	-	1	NA	NA	NA	-54211	NM_146920	258922	Mm.223327	NM_146920	ENSMUSG00000043385	Olfr267	MOR262-1	olfactory receptor 267	protein-coding	0.005000	0.283582	
mm_94920.1	chr11	29503883	29504083	+	1	NA	NA	NA	11050	NM_026465	67939	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0.010000	0.462687	
mm_71870.1	chr8	69208953	69209153	+	1	NA	NA	NA	7	NM_001013379	234358	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	0.065000	0.592040	
mm_13332.1	chr2	102785838	102786038	+	1	NA	NA	NA	79500	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.010000	0.457711	
mm_5583.1	chr1	39552197	39552397	-	1	NA	NA	NA	-3457	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.000000	0.313433	
mm_45509.1	chr5	72504095	72504295	-	1	NA	NA	NA	13	NM_016869	53419	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.065000	0.621891	
mm_119700.1	chr14	53716593	53716793	+	1	NA	NA	NA	537236	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.383085	
mm_135492.1	chr16	46120088	46120288	-	1	NA	NA	NA	60	NM_032465	84544	Mm.29204	NM_032465	ENSMUSG00000022657	Cd96	1700109I12Rik|Tactile	CD96 antigen	protein-coding	0.030000	0.502488	
mm_140997.1	chr17	24885841	24886041	-	1	NA	NA	NA	409	NM_011956	26426	Mm.36718	NM_011956	ENSMUSG00000039183	Nubp2	D17Wsu11e	nucleotide binding protein 2	protein-coding	0.030000	0.502488	
mm_63278.1	chr7	126763710	126763910	+	1	NA	NA	NA	-2604	NM_024228	68616	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	0.030000	0.597015	
mm_47672.1	chr5	127633162	127633362	-	1	NA	NA	NA	1000	NM_177005	319804	Mm.237888	NM_177005	ENSMUSG00000049971	Glt1d1	5730455A04Rik	glycosyltransferase 1 domain containing 1	protein-coding	0.015000	0.467662	
mm_126547.1	chr15	82029108	82029308	+	1	NA	NA	NA	12839	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.035000	0.552239	
mm_83775.1	chr9	52125377	52125577	-	1	NA	NA	NA	9854	NR_105750	102465150		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	0.005000	0.477612	
mm_28539.1	chr3	92778799	92778999	-	1	NA	NA	NA	0	NM_029667	76585	Mm.291782	NM_029667	ENSMUSG00000068888	Lce1i	2310069N01Rik	late cornified envelope 1I	protein-coding	0.000000	0.497512	
mm_9968.1	chr1	191181873	191182073	-	1	NA	NA	NA	1360	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.020000	0.512438	
mm_143581.1	chr17	74323785	74323985	-	1	NA	NA	NA	59	NM_024428	66310	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0.005000	0.338308	2(CCCTTTCTAGTC,+,0.00)
mm_88352.1	chr10	75893348	75893548	+	1	NA	NA	NA	50	NM_024440	70377	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	0.125000	0.731343	
mm_134153.1	chr16	10786384	10786584	-	1	NA	NA	NA	-948	NM_001271603	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.035000	0.537313	
mm_95958.1	chr11	58790813	58791013	+	1	NA	NA	NA	4774	NM_001011760	257917	Mm.377302	NM_001011760	ENSMUSG00000059504	Olfr314	MOR278-2	olfactory receptor 314	protein-coding	0.020000	0.467662	
mm_33954.1	chr4	137454500	137454700	+	1	NA	NA	NA	1304	NM_027063	69380	Mm.272519	NM_027063	ENSMUSG00000041399	1700013G24Rik	AI507018	RIKEN cDNA 1700013G24 gene	protein-coding	0.055000	0.572139	
mm_96120.1	chr11	60728392	60728592	+	1	NA	NA	NA	94	NM_001009927	237781	Mm.339760	NM_001009927	ENSMUSG00000018599	Mief2	AI482195|Gm11|Smcr7	mitochondrial elongation factor 2	protein-coding	0.105000	0.661692	
mm_43170.1	chr5	127406560	127406760	+	1	NA	NA	NA	-125037	NR_038128	67351	Mm.320172	NR_038127	ENSMUSG00000087104	Tmem132cos	1700085B03Rik	transmembrane protein 132C, opposite strand	ncRNA	0.025000	0.512438	
mm_139980.1	chr17	71800701	71800901	+	1	NA	NA	NA	18854	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	0.025000	0.432836	
mm_121956.1	chr14	24486871	24487071	-	1	NA	NA	NA	75	NM_001081247	218832	Mm.343610	NM_183157	ENSMUSG00000025280	Polr3a	9330175N20Rik|BC053071|RPC1|RPC155	polymerase (RNA) III (DNA directed) polypeptide A	protein-coding	0.095000	0.621891	
mm_43572.1	chr5	137745674	137745874	+	1	NA	NA	NA	-195	NM_023910	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.040000	0.641791	
mm_79367.1	chr9	54586381	54586581	+	1	NA	NA	NA	-30	NM_029573	67834	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	0.115000	0.721393	
mm_98436.1	chr11	94937971	94938171	+	1	NA	NA	NA	1847	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.050000	0.547264	
mm_53207.1	chr6	125690520	125690720	+	1	NA	NA	NA	201	NM_153589	243634	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.045000	0.636816	
mm_3741.1	chr1	155244517	155244717	+	1	NA	NA	NA	85914	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.105000	0.751244	
mm_131214.1	chr16	8829999	8830199	+	1	NA	NA	NA	-1	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.155000	0.761194	
mm_83891.1	chr9	55938088	55938288	-	1	NA	NA	NA	-73	NM_001081341	244891	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	0.115000	0.716418	
mm_71779.1	chr8	66472329	66472529	+	1	NA	NA	NA	14078	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.005000	0.378109	
mm_10281.1	chr2	10080084	10080284	+	1	NA	NA	NA	326	NM_020615	11949	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	0.065000	0.631841	
mm_11833.1	chr2	45110351	45110551	+	1	NA	NA	NA	-174	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.045000	0.512438	
mm_2764.1	chr1	130508791	130508991	+	1	NA	NA	NA	-46147	NM_010016	13136	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0.010000	0.442786	-32(GCCTTTATAAGC,+,0.00),-32(GCCTTTATAAGC,-,0.00),-30(CTTTATAAGCAC,+,0.00)
mm_36389.1	chr4	77426887	77427087	-	1	NA	NA	NA	784908	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.338308	
mm_133915.1	chr16	97557788	97557988	+	1	NA	NA	NA	21805	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.000000	0.398010	
mm_111001.1	chr12	78857251	78857451	-	1	NA	NA	NA	4287	NM_023721	73834	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	0.020000	0.358209	
mm_140115.1	chr17	78916425	78916625	+	1	NA	NA	NA	26	NM_001177402	68554	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	0.070000	0.631841	
mm_154267.1	chr19	60771631	60771831	-	1	NA	NA	NA	2654	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.005000	0.363184	13(CCTTTAATAAAG,+,0.00)
mm_33286.1	chr4	128808283	128808483	+	1	NA	NA	NA	-2271	NM_001081098	230761	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.010000	0.572139	
mm_162555.1	chr1	171845481	171845681	-	1	NA	NA	NA	5884	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.000000	0.432836	
mm_75285.1	chr8	41039475	41039675	-	1	NA	NA	NA	2356	NM_001005865	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.015000	0.467662	
mm_33561.1	chr4	131873612	131873812	+	1	NA	NA	NA	73	NM_020587	57317	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0.190000	0.781095	
mm_11864.1	chr2	48949409	48949609	+	1	NA	NA	NA	1	NM_029924	109241	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630|OTTMUSG00000012483	methyl-CpG binding domain protein 5	protein-coding	0.055000	0.661692	
mm_146776.1	chr18	20059409	20059609	-	1	NA	NA	NA	45	NM_013505	13506	Mm.280547	NM_013505	ENSMUSG00000024331	Dsc2	AW228162	desmocollin 2	protein-coding	0.030000	0.552239	
mm_65166.1	chr7	19676745	19676945	-	1	NA	NA	NA	1096	NM_001277944	11813	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0.000000	0.587065	
mm_17888.1	chr2	35013572	35013772	-	1	NA	NA	NA	47769	NM_010406	15139	Mm.2168	NM_010406	ENSMUSG00000026874	Hc	C5|C5a|He	hemolytic complement	protein-coding	0.025000	0.517413	
mm_164116.1	chr15	33465050	33465250	+	1	NA	NA	NA	-59211	NR_033608	73486	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	0.005000	0.432836	
mm_138366.1	chr17	35000854	35001054	+	1	NA	NA	NA	47	NM_011690	22321	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.150000	0.796020	
mm_173022.1	chrX	103037628	103037828	+	1	NA	NA	NA	-103505	NR_026596	331480	Mm.145294	NR_026596		Gm5126	EG331480	predicted pseudogene 5126	ncRNA	0.030000	0.517413	
mm_33084.1	chr4	124377539	124377739	+	1	NA	NA	NA	108320	NR_040774	78460	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA	0.010000	0.393035	
mm_35498.1	chr4	41047891	41048091	-	1	NA	NA	NA	145	NM_007473	11832	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	0.020000	0.582090	
mm_163190.1	chr11	94990966	94991166	+	1	NA	NA	NA	-146	NM_172261	217124	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.135000	0.796020	
mm_68997.1	chr7	126676121	126676321	-	1	NA	NA	NA	136	NM_133670	20887	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|Stp|Stp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	0.000000	0.552239	
mm_8675.1	chr1	156718860	156719060	-	1	NA	NA	NA	-50	NM_145413	215015	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	0.165000	0.840796	
mm_16298.1	chr2	174289387	174289587	+	1	NA	NA	NA	5167	NM_022000	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.005000	0.457711	53(CTTTTTATATGC,+,0.00)
mm_82690.1	chr9	22376085	22376285	-	1	NA	NA	NA	3038	NR_030448	751551		NR_030448	ENSMUSG00000076117	Mir680-2	Mirn680-2	microRNA 680-2	ncRNA	0.010000	0.482587	
mm_133973.1	chr16	4420329	4420529	-	1	NA	NA	NA	69	NM_001291910	11515	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.155000	0.781095	
mm_103725.1	chr11	79530457	79530657	-	1	NA	NA	NA	52	NM_146023	101488212	Mm.439665	NM_146023	ENSMUSG00000070354	Gm21975	Evi2a-evi2b	predicted gene 21975	protein-coding	0.015000	0.477612	76(CTCTTTAAAAAA,-,0.00)
mm_97574.1	chr11	78940170	78940370	+	1	NA	NA	NA	14979	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.587065	
mm_126719.1	chr15	85336352	85336552	+	1	NA	NA	NA	71	NM_016843	54138	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.085000	0.681592	
mm_157652.1	chrX	57326538	57326738	-	1	NA	NA	NA	12091	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	0.025000	0.641791	
mm_55320.1	chr6	55173849	55174049	-	1	NA	NA	NA	1041	NM_009349	21743	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	0.010000	0.507463	
mm_81328.1	chr9	108508211	108508411	+	1	NA	NA	NA	306	NM_133794	97541	Mm.272427	NM_133794	ENSMUSG00000032604	Qars	1110018N24Rik|1200016L19Rik|C80286|GLNRS	glutaminyl-tRNA synthetase	protein-coding	0.020000	0.537313	
mm_97953.1	chr11	83703972	83704172	+	1	NA	NA	NA	16	NM_001081957	100034251	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428|OTTMUSG00000000971	WAP four-disulfide core domain 17	protein-coding	0.005000	0.447761	
mm_68037.1	chr7	101347899	101348099	-	1	NA	NA	NA	-70	NM_001040111	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.085000	0.651741	
mm_84288.1	chr9	63109224	63109424	-	1	NA	NA	NA	37656	NM_172446	207667	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.075000	0.671642	
mm_71432.1	chr8	46503562	46503762	+	1	NA	NA	NA	12696	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.015000	0.532338	
mm_41648.1	chr5	98186620	98186820	+	1	NA	NA	NA	5851	NM_029947	77630	Mm.332511	NM_029947	ENSMUSG00000035456	Prdm8	4930565F05Rik|PFM5	PR domain containing 8	protein-coding	0.050000	0.532338	
mm_160274.1	chr7	119689923	119690123	+	1	NA	NA	NA	-3	NM_178414	233801	Mm.240412	NM_178414	ENSMUSG00000047026	Acsm4	O-MACS|OMACS	acyl-CoA synthetase medium-chain family member 4	protein-coding	0.015000	0.482587	-73(TGCCTTATAGGC,-,0.00),-71(CCTTATAGGCGT,+,0.00)
mm_107410.1	chr12	33957555	33957755	+	1	NA	NA	NA	-16	NM_011658	22160	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	0.115000	0.686567	
mm_171597.1	chr4	147702519	147702719	-	1	NA	NA	NA	12	NM_001127188	100503584	Mm.276881	NM_001127188	ENSMUSG00000062518	Zfp534	Gm13159|OTTMUSG00000010681	zinc finger protein 534	protein-coding	0.015000	0.502488	
mm_104173.1	chr11	87591662	87591862	-	1	NA	NA	NA	-455	NM_133215	170749	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0.080000	0.587065	
mm_157802.1	chrX	73927949	73928149	-	1	NA	NA	NA	2801	NM_023132	19703	Mm.236969	NM_023132	ENSMUSG00000031387	Renbp	Age|Rnbp	renin binding protein	protein-coding	0.005000	0.547264	-36(CCCTTGATAAGG,-,0.00)
mm_83135.1	chr9	40437097	40437297	-	1	NA	NA	NA	18567	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.015000	0.417910	
mm_13038.1	chr2	91082071	91082271	+	1	NA	NA	NA	-11856	NM_001290765	68427	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.010000	0.587065	
mm_55520.1	chr6	70372531	70372731	-	1	NA	NA	NA	419544	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.447761	
mm_167731.1	chr9	104727797	104727997	+	1	NA	NA	NA	158109	NM_028719	74020	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	0.000000	0.507463	
mm_34289.1	chr4	141566392	141566592	+	1	NA	NA	NA	20330	NR_030695	320456	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.005000	0.527363	-80(GCTTATCTAGGG,+,0.00),35(GTTTTTAAAGTC,+,0.00)
mm_45369.1	chr5	66019328	66019528	-	1	NA	NA	NA	-15143	NR_027961	231253	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.040000	0.547264	
mm_165867.1	chr4	34730024	34730224	-	1	NA	NA	NA	82	NM_027041	69329	Mm.389548	NM_027041	ENSMUSG00000028294	Cfap206	1700003M02Rik|AU024269	cilia and flagella associated protein 206	protein-coding	0.105000	0.661692	
mm_97325.1	chr11	76945655	76945855	+	1	NA	NA	NA	99	NM_178645	104184	Mm.399785	NM_178645	ENSMUSG00000020840	Blmh	AI035728|Bh|Bmh	bleomycin hydrolase	protein-coding	0.085000	0.621891	
mm_76715.1	chr8	94678632	94678832	-	1	NA	NA	NA	11641	NM_024269	107566	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0.035000	0.527363	
mm_51106.1	chr6	67278119	67278319	+	1	NA	NA	NA	11240	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.010000	0.353234	
mm_55538.1	chr6	70777122	70777322	-	1	NA	NA	NA	14953	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.343284	
mm_30186.1	chr3	144691308	144691508	-	1	NA	NA	NA	28927	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.010000	0.368159	
mm_51384.1	chr6	77242535	77242735	+	1	NA	NA	NA	-82	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.080000	0.557214	-79(CGGTTTAAAAAA,-,0.00)
mm_9739.1	chr1	180256200	180256400	-	1	NA	NA	NA	0	NM_001128605	19165	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.120000	0.771144	
mm_51135.1	chr6	68570636	68570836	+	1	NA	NA	NA	756438	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.482587	-33(TTCTTTAAAAAC,-,0.00)
mm_42946.1	chr5	122990708	122990908	+	1	NA	NA	NA	1454	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.030000	0.512438	
mm_107794.1	chr12	62687671	62687871	+	1	NA	NA	NA	-16	NR_131949	73309	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0.010000	0.422886	
mm_53653.1	chr6	141249891	141250091	+	1	NA	NA	NA	722	NM_018779	54611	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0.110000	0.751244	
mm_40627.1	chr5	64821823	64822023	+	1	NA	NA	NA	18400	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.045000	0.467662	
mm_36568.1	chr4	87806211	87806411	-	1	NA	NA	NA	12	NM_001286158	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.015000	0.467662	
mm_154273.1	chr19	60776583	60776783	-	1	NA	NA	NA	-2286	NR_037245	100526521		NR_037245	ENSMUSG00000104890	Mir3084-1	Mir3084|mmu-mir-3084|mmu-mir-3084-1	microRNA 3084-1	ncRNA	0.035000	0.407960	
mm_172881.1	chr9	48974978	48975178	-	1	NA	NA	NA	-10088	NM_020274	57014	Mm.117131	NM_020274	ENSMUSG00000008590	Htr3b	5-HT3B	5-hydroxytryptamine (serotonin) receptor 3B	protein-coding	0.010000	0.452736	
mm_53723.1	chr6	144672783	144672983	+	1	NA	NA	NA	15	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA	0.015000	0.582090	-84(CCTCATAGGGGC,+,0.00)
mm_55548.1	chr6	71201580	71201780	-	1	NA	NA	NA	1792	NM_017399	14080	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0.020000	0.502488	
mm_116762.1	chr13	52572509	52572709	-	1	NA	NA	NA	616	NR_046069	100040572	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0.010000	0.472637	-82(CCTTTTAGGGCT,+,0.00),51(GTTTATAAAAGC,-,0.00)
mm_60825.1	chr7	45706106	45706306	+	1	NA	NA	NA	959	NM_016974	13170	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.010000	0.532338	
mm_27841.1	chr3	79154690	79154890	-	1	NA	NA	NA	-8915	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.273632	
mm_28021.1	chr3	83045978	83046178	-	1	NA	NA	NA	3785	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.015000	0.452736	
mm_127521.1	chr15	102029787	102029987	+	1	NA	NA	NA	1671	NM_010664	16668	Mm.22479	NM_010664	ENSMUSG00000023043	Krt18	CK18|K18|Krt1-18	keratin 18	protein-coding	0.025000	0.512438	
mm_77073.1	chr8	110142641	110142841	-	1	NA	NA	NA	25465	NM_007586	12308	Mm.2755	NM_007586	ENSMUSG00000003657	Calb2	CR	calbindin 2	protein-coding	0.035000	0.582090	
mm_19575.1	chr2	101643635	101643835	-	1	NA	NA	NA	5797	NM_009019	19373	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0.020000	0.457711	
mm_92955.1	chr10	85539418	85539618	-	1	NA	NA	NA	-58893	NM_001017525	74007	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.015000	0.517413	
mm_114260.1	chr13	56747873	56748073	+	1	NA	NA	NA	44305	NM_001164042	17129	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.030000	0.447761	
mm_32760.1	chr4	116687745	116687945	+	1	NA	NA	NA	-1823	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.015000	0.427861	4(TGCTCTTAAGGG,-,0.00),5(GCTCTTAAGGGC,+,0.00)
mm_58494.1	chr7	3703938	3704138	+	1	NA	NA	NA	-3	NM_029767	76846	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	0.075000	0.507463	50(CGCCTTTTAGGG,-,0.00),52(CCTTTTAGGGGT,+,0.00)
mm_125682.1	chr15	66700859	66701059	+	1	NA	NA	NA	30189	NM_009375	21819	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	0.015000	0.507463	
mm_23886.1	chr3	83031103	83031303	+	1	NA	NA	NA	5050	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.050000	0.592040	
mm_113300.1	chr13	30748574	30748774	+	1	NA	NA	NA	-559	NM_001347508	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.035000	0.417910	12(GCTTATAAACTT,+,0.00)
mm_143804.1	chr17	83514223	83514423	-	1	NA	NA	NA	10	NM_009187	20463	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.065000	0.567164	-7(CCTTTTCTAGGG,+,0.00)
mm_1573.1	chr1	74263664	74263864	+	1	NA	NA	NA	-14836	NM_174985	227289	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.035000	0.522388	
mm_103659.1	chr11	78984840	78985040	-	1	NA	NA	NA	-16	NM_010708	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.015000	0.557214	
mm_127396.1	chr15	101128838	101129038	+	1	NA	NA	NA	416	NM_001277257	11482	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	0.075000	0.641791	
mm_47192.1	chr5	120756870	120757070	-	1	NA	NA	NA	-7122	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.030000	0.552239	
mm_125798.1	chr15	74835700	74835900	+	1	NA	NA	NA	5843	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.025000	0.522388	
mm_44300.1	chr5	8995642	8995842	-	1	NA	NA	NA	1404	NM_023733	74114	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.000000	0.363184	
mm_79179.1	chr9	48314334	48314534	+	1	NA	NA	NA	26464	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.010000	0.482587	
mm_54462.1	chr6	34877942	34878142	-	1	NA	NA	NA	23	NM_199145	78412	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.125000	0.751244	
mm_83160.1	chr9	40465653	40465853	-	1	NA	NA	NA	-9989	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.015000	0.477612	
mm_60126.1	chr7	36711800	36712000	+	1	NA	NA	NA	13782	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.005000	0.383085	
mm_172267.1	chr6	77763286	77763486	-	1	NA	NA	NA	216281	NM_145732	12386	Mm.34637	NM_009819	ENSMUSG00000063063	Ctnna2	AI481747|Catna|Catna2|cdf|chp	catenin (cadherin associated protein), alpha 2	protein-coding	0.005000	0.363184	
mm_86111.1	chr9	115310771	115310971	-	1	NA	NA	NA	-450	NM_024222	68292	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0.145000	0.721393	
mm_54817.1	chr6	42351196	42351396	-	1	NA	NA	NA	1468	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.015000	0.572139	
mm_166541.1	chr6	34179095	34179295	+	1	NA	NA	NA	-2141	NM_021435	58246	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0.005000	0.437811	
mm_91715.1	chr10	44441140	44441340	-	1	NA	NA	NA	17508	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.050000	0.547264	
mm_94498.1	chr11	7144973	7145173	+	1	NA	NA	NA	43496	NR_045101	100041347	Mm.300962	NR_045101	ENSMUSG00000087512	Gm11985	OTTMUSG00000005133	predicted gene 11985	ncRNA	0.030000	0.552239	
mm_28712.1	chr3	95653622	95653822	-	1	NA	NA	NA	-4999	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.025000	0.522388	
mm_55298.1	chr6	54760160	54760360	-	1	NA	NA	NA	-56656	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.015000	0.447761	
mm_4835.1	chr1	186587386	186587586	+	1	NA	NA	NA	-28805	NR_131158	320449	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.010000	0.507463	
mm_94319.1	chr11	4236730	4236930	+	1	NA	NA	NA	45	NM_001013365	18413	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.030000	0.611940	
mm_7139.1	chr1	91063148	91063348	-	1	NA	NA	NA	9804	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.020000	0.572139	
mm_44516.1	chr5	24350994	24351194	-	1	NA	NA	NA	510	NM_013569	16511	Mm.6539	NM_013569	ENSMUSG00000038319	Kcnh2	AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding	0.025000	0.661692	
mm_95001.1	chr11	31872861	31873061	+	1	NA	NA	NA	2021	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.010000	0.577114	
mm_115406.1	chr13	114113466	114113666	+	1	NA	NA	NA	38026	NR_045836	319803	Mm.386896	NM_177004		A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	0.005000	0.348259	
mm_92866.1	chr10	81627422	81627622	-	1	NA	NA	NA	86	NM_181586	50721	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0.105000	0.621891	
mm_110142.1	chr12	26448282	26448482	-	1	NA	NA	NA	8070	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.417910	
mm_154552.1	chrM	14988	15188	-	1	NA	NA	NA	NA	NA									0.015000	0.407960	
mm_131414.1	chr16	14705483	14705683	+	1	NA	NA	NA	-276	NM_011415	20583	Mm.4272	NM_011415	ENSMUSG00000022676	Snai2	Slug|Slugh|Snail2	snail family zinc finger 2	protein-coding	0.055000	0.562189	
mm_48285.1	chr5	138171766	138171966	-	1	NA	NA	NA	-4	NM_008568	17220	Mm.378965	NM_008568	ENSMUSG00000029730	Mcm7	AI747533|Mcmd7|mCDC47	minichromosome maintenance complex component 7	protein-coding	0.085000	0.582090	
mm_2896.1	chr1	131931928	131932128	+	1	NA	NA	NA	21570	NM_001145804	98415	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.005000	0.373134	
mm_46440.1	chr5	105078429	105078629	-	1	NA	NA	NA	-24968	NM_029509	76074	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0.010000	0.383085	
mm_100589.1	chr11	120955242	120955442	+	1	NA	NA	NA	6275	NM_001038654	80879	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0.050000	0.597015	
mm_94937.1	chr11	29707189	29707389	+	1	NA	NA	NA	-11274	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.010000	0.378109	
mm_76978.1	chr8	106769166	106769366	-	1	NA	NA	NA	86198	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.025000	0.517413	
mm_64045.1	chr7	140835089	140835289	+	1	NA	NA	NA	51	NM_001347605	76974	Mm.272359	NM_029821	ENSMUSG00000025481	Urah	1190003J15Rik|2810420C16Rik	urate (5-hydroxyiso-) hydrolase	protein-coding	0.035000	0.616915	
mm_51128.1	chr6	68302309	68302509	+	1	NA	NA	NA	-736710	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.005000	0.472637	
mm_73025.1	chr8	94152898	94153098	+	1	NA	NA	NA	391	NM_013603	17751	Mm.2064	NM_013603	ENSMUSG00000031760	Mt3	Mt-3	metallothionein 3	protein-coding	0.020000	0.507463	
mm_66896.1	chr7	59922515	59922715	-	1	NA	NA	NA	51816	NR_015456	52480	Mm.482346	NR_015456	ENSMUSG00000100826	Snhg14	AU018661|D7Ertd715e|Lncat	small nucleolar RNA host gene 14	ncRNA	0.000000	0.432836	
mm_19417.1	chr2	91929779	91929979	-	1	NA	NA	NA	1823	NM_001291481	17242	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.010000	0.422886	
mm_34754.1	chr4	152329963	152330163	+	1	NA	NA	NA	4337	NR_102291	19934	Mm.307846	NM_009079	ENSMUSG00000028936	Rpl22	2700038K18Rik	ribosomal protein L22	protein-coding	0.035000	0.547264	
mm_86697.1	chr10	18469866	18470066	+	1	NA	NA	NA	-15	NM_001163592	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.010000	0.487562	
mm_123711.1	chr14	69815815	69816015	-	1	NA	NA	NA	-10370	NM_153514	246710	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0.010000	0.512438	
mm_48316.1	chr5	138976929	138977129	-	1	NA	NA	NA	17924	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.030000	0.383085	
mm_47323.1	chr5	122471132	122471332	-	1	NA	NA	NA	30993	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.020000	0.467662	
mm_82310.1	chr9	7872798	7872998	-	1	NA	NA	NA	272	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.070000	0.671642	
mm_36778.1	chr4	102959569	102959769	-	1	NA	NA	NA	-26710	NM_001163767	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.010000	0.527363	-35(CACTATAAAAGG,-,0.00)
mm_139468.1	chr17	55961504	55961704	+	1	NA	NA	NA	-2203	NR_108021	100504333	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	0.025000	0.567164	
mm_138710.1	chr17	36043731	36043931	+	1	NA	NA	NA	870	NM_001034909	547347	Mm.484641	NM_001034909	ENSMUSG00000073407	Gm6034	EG547347|H2-gs14-2	predicted gene 6034	protein-coding	0.000000	0.477612	
mm_91584.1	chr10	40233277	40233477	-	1	NA	NA	NA	13602	NM_001042556	67239	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	0.015000	0.398010	
mm_163865.1	chr14	19418857	19419057	-	1	NA	NA	NA	183630	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.353234	
mm_76718.1	chr8	94802364	94802564	-	1	NA	NA	NA	-7989	NM_011332	20295	Mm.41988	NM_011332	ENSMUSG00000031780	Ccl17	Abcd-2|Scya17|Scya17l|Tarc	chemokine (C-C motif) ligand 17	protein-coding	0.010000	0.502488	
mm_36817.1	chr4	104853682	104853882	-	1	NA	NA	NA	22616	NM_001290645	230558	Mm.197638	NM_146148	ENSMUSG00000035031	C8a	-	complement component 8, alpha polypeptide	protein-coding	0.025000	0.427861	
mm_54444.1	chr6	34423026	34423226	-	1	NA	NA	NA	10764	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.015000	0.393035	
mm_47708.1	chr5	129918275	129918475	-	1	NA	NA	NA	9835	NM_026916	69034	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	0.060000	0.611940	
mm_146985.1	chr18	33891912	33892112	-	1	NA	NA	NA	97120	NR_038151	69749	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.010000	0.527363	
mm_117331.1	chr13	68999209	68999409	-	1	NA	NA	NA	232	NM_153534	210044	Mm.390617	NM_153534	ENSMUSG00000021536	Adcy2	mKIAA1060	adenylate cyclase 2	protein-coding	0.190000	0.835821	
mm_114829.1	chr13	92355058	92355258	+	1	NA	NA	NA	-155	NM_010829	17686	Mm.343101	NM_010829	ENSMUSG00000014850	Msh3	D13Em1|Rep-3|Rep3	mutS homolog 3	protein-coding	0.075000	0.616915	
mm_87790.1	chr10	60298111	60298311	+	1	NA	NA	NA	13750	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.547264	-1(GGGCTTAAATGG,-,0.00),1(GCTTAAATGGAA,+,0.00)
mm_163313.1	chr12	5891977	5892177	+	1	NA	NA	NA	515575	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	0.005000	0.497512	-55(GTCTAGAAATGG,-,0.00)
mm_133513.1	chr16	90738414	90738614	+	1	NA	NA	NA	190	NM_029844	77037	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.045000	0.567164	
mm_171975.1	chr5	89203838	89204038	-	1	NA	NA	NA	253960	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.035000	0.517413	
mm_37729.1	chr4	129572280	129572480	-	1	NA	NA	NA	1261	NM_001162433	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.005000	0.542289	
mm_42947.1	chr5	122990760	122990960	+	1	NA	NA	NA	1506	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.010000	0.517413	
mm_171069.1	chr3	115745190	115745390	+	1	NA	NA	NA	-30235	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.045000	0.557214	
mm_109835.1	chr12	4233626	4233826	-	1	NA	NA	NA	-301	NM_001204912	69709	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.055000	0.557214	
mm_161423.1	chr15	39436904	39437104	+	1	NA	NA	NA	-222507	NM_001256384	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.015000	0.378109	
mm_29340.1	chr3	108217602	108217802	-	1	NA	NA	NA	-7175	NM_175183	72522	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	0.015000	0.502488	
mm_18856.1	chr2	75679299	75679499	-	1	NA	NA	NA	20109	NR_033513	627828	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	0.020000	0.407960	
mm_127688.1	chr15	102972132	102972332	+	1	NA	NA	NA	-1118	NR_029722	723958		NR_029722	ENSMUSG00000065488	Mir196a-2	Mirn196a-2|mir-196a-2	microRNA 196a-2	ncRNA	0.030000	0.527363	-32(GCATTTAAAGGT,+,0.00)
mm_116340.1	chr13	38503383	38503583	-	1	NA	NA	NA	24431	NM_001289599	105245	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	0.040000	0.582090	-37(CTCTCTAAAAAG,-,0.00)
mm_128475.1	chr15	50889138	50889338	-	1	NA	NA	NA	-124	NR_035444	100316685		NR_035444	ENSMUSG00000084458	Mir1907	Mirn1907|mmu-mir-1907	microRNA 1907	ncRNA	0.020000	0.487562	
mm_5557.1	chr1	38665496	38665696	-	1	NA	NA	NA	-38352	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.000000	0.527363	
mm_143115.1	chr17	57207269	57207469	-	1	NA	NA	NA	9859	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.005000	0.492537	25(ACCTAGAAAAGG,-,0.00)
mm_140091.1	chr17	75465513	75465713	+	1	NA	NA	NA	75	NM_207246	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding	0.045000	0.547264	
mm_149018.1	chr19	8741703	8741903	+	1	NA	NA	NA	0	NM_019829	56389	Mm.153061	NM_019829	ENSMUSG00000010110	Stx5a	0610031F24Rik|D19Ertd627e|Stx5	syntaxin 5A	protein-coding	0.035000	0.502488	19(CTTTTAAGAGGG,+,0.00)
mm_166814.1	chr7	16372137	16372337	-	1	NA	NA	NA	15659	NM_001285892	56459	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	0.005000	0.497512	
mm_101999.1	chr11	51262900	51263100	-	1	NA	NA	NA	-49	NM_177567	193286	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0.100000	0.656716	
mm_83284.1	chr9	43106062	43106262	-	1	NA	NA	NA	-444	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0.125000	0.691542	
mm_39227.1	chr4	156200742	156200942	-	1	NA	NA	NA	-24	NM_015783	100038882	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	0.025000	0.457711	
mm_137801.1	chr17	29774488	29774688	+	1	NA	NA	NA	-57571	NM_001163741	68597	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	0.000000	0.507463	
mm_126283.1	chr15	79212661	79212861	+	1	NA	NA	NA	-16412	NM_008837	18693	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	0.025000	0.641791	
mm_154813.1	chrX	13661260	13661460	+	1	NA	NA	NA	-3	NM_175669	319200	Mm.383294	NM_175669	ENSMUSG00000047678	Gpr82	-	G protein-coupled receptor 82	protein-coding	0.025000	0.507463	
mm_113150.1	chr13	24761472	24761672	+	1	NA	NA	NA	365	NM_020567	57441	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.115000	0.681592	
mm_13799.1	chr2	118926465	118926665	+	1	NA	NA	NA	68	NM_028117	72136	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	0.075000	0.731343	
mm_74287.1	chr8	125734441	125734641	+	1	NA	NA	NA	338	NM_001310688	66566	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.045000	0.616915	
mm_14435.1	chr2	130589377	130589577	+	1	NA	NA	NA	-6889	NM_009732	11998	Mm.6190	NM_009732	ENSMUSG00000037727	Avp	Vp|Vsp	arginine vasopressin	protein-coding	0.015000	0.552239	
mm_7632.1	chr1	127732465	127732665	-	1	NA	NA	NA	3152	NM_001033041	266645	Mm.25735	NM_001033041	ENSMUSG00000026348	Acmsd	-	amino carboxymuconate semialdehyde decarboxylase	protein-coding	0.015000	0.457711	
mm_164243.1	chr15	95184935	95185135	-	1	NA	NA	NA	-35717	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA	0.005000	0.497512	
mm_109516.1	chr12	111454285	111454485	+	1	NA	NA	NA	11724	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.005000	0.492537	
mm_80590.1	chr9	85842643	85842843	+	1	NA	NA	NA	-109	NM_001164792	21983	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	0.060000	0.661692	
mm_152547.1	chr19	11372283	11372483	-	1	NA	NA	NA	-3105	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.005000	0.373134	
mm_133291.1	chr16	77487711	77487911	+	1	NA	NA	NA	-111125	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.020000	0.373134	
mm_112350.1	chr12	118301298	118301498	-	1	NA	NA	NA	42	NM_009239	20688	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0.140000	0.761194	
mm_125448.1	chr15	48782717	48782917	+	1	NA	NA	NA	9172	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0.000000	0.253731	-59(CCCTTAAAACTG,+,0.00)
mm_154904.1	chrX	20962015	20962215	+	1	NA	NA	NA	1	NR_027446	320742	Mm.391227	NR_027445		A230072C01Rik	-	RIKEN cDNA A230072C01 gene	ncRNA	0.065000	0.616915	
mm_4571.1	chr1	177729787	177729987	+	1	NA	NA	NA	73	NM_027077	69428	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.010000	0.527363	
mm_11703.1	chr2	36136306	36136506	+	1	NA	NA	NA	8	NM_026422	67871	Mm.378232	NM_026422	ENSMUSG00000026887	Mrrf	2400002D02Rik|MRFF|MTRRF|RRF	mitochondrial ribosome recycling factor	protein-coding	0.060000	0.626866	
mm_72932.1	chr8	91313204	91313404	+	1	NA	NA	NA	-82	NM_173431	244585	Mm.324592	NM_173431	ENSMUSG00000033282	Rpgrip1l	1700047E16Rik|4931437C01|Ftm|Nphp8	Rpgrip1-like	protein-coding	0.095000	0.636816	
mm_125908.1	chr15	76009483	76009683	+	1	NA	NA	NA	-85	NM_001168253	105732	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	0.130000	0.791045	
mm_121610.1	chr14	8258832	8259032	-	1	NA	NA	NA	87	NM_053115	93732	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0.010000	0.532338	60(GGGCCTATAGGG,-,0.00)
mm_59969.1	chr7	30435038	30435238	+	1	NA	NA	NA	10444	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.010000	0.462687	
mm_100859.1	chr11	5876795	5876995	-	1	NA	NA	NA	1361	NM_008894	18972	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	0.040000	0.616915	
mm_73990.1	chr8	120669209	120669409	+	1	NA	NA	NA	989	NM_001293559	12857	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit IV isoform 1	protein-coding	0.020000	0.442786	
mm_163698.1	chr13	102762328	102762528	+	1	NA	NA	NA	2173	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.025000	0.557214	
mm_81054.1	chr9	105658384	105658584	+	1	NA	NA	NA	15489	NM_001081309	75669	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 4, p150	protein-coding	0.050000	0.597015	
mm_81557.1	chr9	110344119	110344319	+	1	NA	NA	NA	10863	NM_001001144	235623	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0.005000	0.472637	
mm_166556.1	chr6	42593240	42593440	-	1	NA	NA	NA	4032	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.020000	0.452736	
mm_136831.1	chr17	12741272	12741472	+	1	NA	NA	NA	61	NR_027784	104103	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.050000	0.567164	
mm_130408.1	chr15	97976765	97976965	-	1	NA	NA	NA	12636	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.030000	0.562189	
mm_106749.1	chr12	4082485	4082685	+	1	NA	NA	NA	11	NM_153082	217378	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	0.130000	0.731343	
mm_104618.1	chr11	97280538	97280738	-	1	NA	NA	NA	-62	NM_008942	19155	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0.180000	0.855721	
mm_142196.1	chr17	36958087	36958287	-	1	NA	NA	NA	241	NM_023162	66136	Mm.486229	NM_023162	ENSMUSG00000036315	Znrd1	1110014N07Rik|Rpa12	zinc ribbon domain containing, 1	protein-coding	0.045000	0.582090	
mm_66333.1	chr7	42954309	42954509	-	1	NA	NA	NA	-20620	NM_001105060	435975	Mm.469897	NM_001105060	ENSMUSG00000090751	Vmn2r63	EG435975	vomeronasal 2, receptor 63	protein-coding	0.035000	0.462687	
mm_169277.1	chr13	93448319	93448519	+	1	NA	NA	NA	51389	NM_021310	57748	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	0.025000	0.472637	
mm_170511.1	chr19	28560703	28560903	-	1	NA	NA	NA	-117421	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.005000	0.412935	
mm_113452.1	chr13	35833458	35833658	+	1	NA	NA	NA	72789	NM_145938	208366	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	0.000000	0.328358	
mm_76294.1	chr8	84203389	84203589	-	1	NA	NA	NA	-5029	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.040000	0.592040	
mm_70895.1	chr8	25601392	25601592	+	1	NA	NA	NA	-109	NM_001308481	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.075000	0.656716	
mm_24979.1	chr3	96829397	96829597	+	1	NA	NA	NA	-146	NM_001163496	54215	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	0.025000	0.572139	
mm_170370.1	chr18	54699126	54699326	-	1	NA	NA	NA	87482	NR_045400	328957	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	0.055000	0.487562	
mm_96491.1	chr11	67798178	67798378	+	1	NA	NA	NA	7	NM_001013013	68460	Mm.22167	NM_001013013	ENSMUSG00000033044	Dhrs7c	1110001P11Rik|AI120487|SRP-35	dehydrogenase/reductase (SDR family) member 7C	protein-coding	0.010000	0.422886	
mm_127641.1	chr15	102478558	102478758	+	1	NA	NA	NA	8026	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.010000	0.422886	
mm_172288.1	chr6	95216506	95216706	-	1	NA	NA	NA	98726	NM_001008785	243574	Mm.333275	NM_001008785	ENSMUSG00000030031	Kbtbd8	AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842	kelch repeat and BTB (POZ) domain containing 8	protein-coding	0.025000	0.492537	-18(CCTTAAAAATCC,+,0.00)
mm_123519.1	chr14	66296832	66297032	-	1	NA	NA	NA	-93	NM_029979	66854	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	0.075000	0.601990	
mm_126689.1	chr15	84987875	84988075	+	1	NA	NA	NA	-4	NM_001033273	223739	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.165000	0.771144	
mm_52245.1	chr6	105677721	105677921	+	1	NA	NA	NA	76	NM_173004	269784	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding	0.065000	0.616915	
mm_61815.1	chr7	87304178	87304378	+	1	NA	NA	NA	57629	NM_001285833	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	0.000000	0.353234	
mm_89232.1	chr10	87562467	87562667	+	1	NA	NA	NA	40772	NM_008777	18478	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0.000000	0.363184	
mm_15199.1	chr2	154206381	154206581	+	1	NA	NA	NA	6101	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.035000	0.597015	
mm_146413.1	chr18	84091721	84091921	+	1	NA	NA	NA	3663	NM_146090	225791	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.055000	0.562189	
mm_167069.1	chr7	99540331	99540531	+	1	NA	NA	NA	4945	NM_177231	109689	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	0.010000	0.417910	
mm_58016.1	chr6	136659226	136659426	-	1	NA	NA	NA	2567	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.020000	0.507463	
mm_57479.1	chr6	125236863	125237063	-	1	NA	NA	NA	64	NM_001033126	21940	Mm.367714	NM_001033126	ENSMUSG00000030336	Cd27	S152|Tnfrsf7|Tp55	CD27 antigen	protein-coding	0.015000	0.562189	
mm_48650.1	chr5	145857676	145857876	-	1	NA	NA	NA	22078	NM_007818	13112	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	0.005000	0.402985	
mm_118057.1	chr13	102666361	102666561	-	1	NA	NA	NA	-27097	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.020000	0.467662	-34(CACTCTTAAAGC,-,0.00)
mm_9486.1	chr1	173599160	173599360	-	1	NA	NA	NA	14	NM_001177349	623121	Mm.138449	NM_001033384	ENSMUSG00000073491	Ifi213	E030037K03Rik|E430029J22Rik|Pydc4|Pyr-A	interferon activated gene 213	protein-coding	0.010000	0.452736	
mm_12099.1	chr2	60972299	60972499	+	1	NA	NA	NA	2752	NR_045335	100038493	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	ENSMUSG00000075325|OTTMUSG00000012844	predicted gene 13582	ncRNA	0.020000	0.437811	
mm_170244.1	chr17	92701742	92701942	-	1	NA	NA	NA	-497175	NM_001315503	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.035000	0.592040	
mm_150280.1	chr19	34251712	34251912	+	1	NA	NA	NA	3561	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.030000	0.492537	
mm_44355.1	chr5	17795537	17795737	-	1	NA	NA	NA	40259	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.010000	0.353234	
mm_36423.1	chr4	81442696	81442896	-	1	NA	NA	NA	19	NM_010820	17475	Mm.153039	NM_010820	ENSMUSG00000028402	Mpdz	AI225843|B930003D11Rik|MUPP1	multiple PDZ domain protein	protein-coding	0.180000	0.791045	
mm_21560.1	chr2	164182545	164182745	-	1	NA	NA	NA	97	NM_145369	209232	Mm.218273	NM_145369	ENSMUSG00000040154	Wfdc5	BC019734|Prg5|Wap1	WAP four-disulfide core domain 5	protein-coding	0.005000	0.517413	
mm_8397.1	chr1	151475615	151475815	-	1	NA	NA	NA	25108	NM_011277	19821	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0.005000	0.462687	-79(CCCTTTATACTG,+,0.00)
mm_104508.1	chr11	95982488	95982688	-	1	NA	NA	NA	-19205	NR_037223	100526468		NR_037223	ENSMUSG00000093358	Mir3063	mmu-mir-3063	microRNA 3063	ncRNA	0.005000	0.507463	
mm_106197.1	chr11	116842759	116842959	-	1	NA	NA	NA	590	NM_033398	107817	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	0.080000	0.661692	
mm_106145.1	chr11	116543307	116543507	-	1	NA	NA	NA	8667	NM_011451	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.020000	0.557214	
mm_79952.1	chr9	66126543	66126743	+	1	NA	NA	NA	32	NM_026635	68250	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	0.060000	0.502488	
mm_15402.1	chr2	156730617	156730817	+	1	NA	NA	NA	9438	NM_001042487	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.015000	0.537313	
mm_92384.1	chr10	76468740	76468940	-	1	NA	NA	NA	-131	NM_019434	54387	Mm.30098	NM_019434	ENSMUSG00000001150	Mcm3ap	GANP|mKIAA0572	minichromosome maintenance complex component 3 associated protein	protein-coding	0.100000	0.631841	
mm_168464.1	chr1	147671160	147671360	+	1	NA	NA	NA	1173573	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.030000	0.467662	
mm_116997.1	chr13	56626074	56626274	-	1	NA	NA	NA	16571	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.025000	0.532338	
mm_1344.1	chr1	66175217	66175417	+	1	NA	NA	NA	-12	NM_008632	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.135000	0.741294	
mm_154677.1	chrX	7899310	7899510	+	1	NA	NA	NA	74	NR_132589	21855	Mm.27393	NM_011591	ENSMUSG00000031158	Timm17b	17kDa|Sfc3|mTim17b	translocase of inner mitochondrial membrane 17b	protein-coding	0.115000	0.656716	
mm_152079.1	chr19	6857428	6857628	-	1	NA	NA	NA	683	NM_001081291	78317	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.020000	0.597015	
mm_69097.1	chr7	127019588	127019788	-	1	NA	NA	NA	1523	NM_001102563	69017	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.020000	0.577114	
mm_143100.1	chr17	57081148	57081348	-	1	NA	NA	NA	-2738	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.040000	0.597015	
mm_135001.1	chr16	32179483	32179683	-	1	NA	NA	NA	-217	NM_001033539	328660	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.020000	0.507463	54(GGCTATAAGAAG,-,0.00)
mm_165568.1	chr3	18243133	18243333	-	1	NA	NA	NA	105	NM_007825	13123	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	0.055000	0.636816	
mm_17966.1	chr2	37573515	37573715	-	1	NA	NA	NA	56989	NM_177383	338346	Mm.445325	NM_177383	ENSMUSG00000053164	Gpr21	C230004C13Rik	G protein-coupled receptor 21	protein-coding	0.000000	0.323383	
mm_145700.1	chr18	62657142	62657342	+	1	NA	NA	NA	-60978	NM_001001803	408198	Mm.478742	NM_001001803	ENSMUSG00000060201	Spink7	EG408198|Ecg2	serine peptidase inhibitor, Kazal type 7 (putative)	protein-coding	0.005000	0.447761	
mm_94295.1	chr11	4069847	4070047	+	1	NA	NA	NA	5094	NM_001029937	380683	Mm.296806	NM_001029937	ENSMUSG00000054986	Sec14l3	1110069O07Rik	SEC14-like lipid binding 3	protein-coding	0.000000	0.502488	
mm_108674.1	chr12	86678440	86678640	+	1	NA	NA	NA	-160	NM_177354	238328	Mm.216101	NM_177354	ENSMUSG00000021256	Vash1	AI834978|D930046M13Rik|G630009D10Rik	vasohibin 1	protein-coding	0.055000	0.552239	9(CGCCCTAAAAAA,-,0.00)
mm_119719.1	chr14	53902885	53903085	+	1	NA	NA	NA	350944	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.398010	
mm_37546.1	chr4	125127061	125127261	-	1	NA	NA	NA	720	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.020000	0.477612	
mm_35193.1	chr4	16013789	16013989	-	1	NA	NA	NA	-12	NM_145950	209212	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.175000	0.796020	
mm_112311.1	chr12	114880273	114880473	-	1	NA	NA	NA	-366679	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.432836	
mm_19069.1	chr2	77703296	77703496	-	1	NA	NA	NA	-124	NM_001113399	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.050000	0.467662	
mm_12105.1	chr2	61581945	61582145	+	1	NA	NA	NA	3459	NM_011529	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.005000	0.248756	-69(GTGTATATATGC,-,0.00)
mm_157881.1	chrX	75842921	75843121	-	1	NA	NA	NA	0	NM_001166454	102866	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	0.010000	0.442786	
mm_148435.1	chr19	3943498	3943698	+	1	NA	NA	NA	8412	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.050000	0.572139	
mm_84330.1	chr9	64021902	64022102	-	1	NA	NA	NA	57	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.090000	0.626866	
mm_21158.1	chr2	154569694	154569894	-	1	NA	NA	NA	98	NM_007891	13555	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|mKIAA4009	E2F transcription factor 1	protein-coding	0.160000	0.761194	
mm_3282.1	chr1	136624909	136625109	+	1	NA	NA	NA	108	NM_001160251	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.140000	0.696517	
mm_10589.1	chr2	18497389	18497589	+	1	NA	NA	NA	-104659	NM_007869	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.015000	0.442786	
mm_14370.1	chr2	129629970	129630170	+	1	NA	NA	NA	36901	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.015000	0.572139	
mm_6672.1	chr1	80340508	80340708	-	1	NA	NA	NA	82	NM_001313728	26554	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.155000	0.751244	
mm_66742.1	chr7	46710565	46710765	-	1	NA	NA	NA	-14	NM_030233	78935	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.100000	0.686567	
mm_118434.1	chr14	8016474	8016674	+	1	NA	NA	NA	13608	NM_001331064	66082	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	0.015000	0.467662	-68(AACTATAAAGGG,-,0.00)
mm_95866.1	chr11	58009933	58010133	+	1	NA	NA	NA	969	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.110000	0.706468	
mm_148530.1	chr19	4557909	4558109	+	1	NA	NA	NA	-36310	NM_008797	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.005000	0.462687	
mm_128422.1	chr15	45632296	45632496	-	1	NA	NA	NA	-517462	NM_026200	67498	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding	0.005000	0.477612	-17(CGCTATAAAAGG,-,0.00)
mm_6032.1	chr1	59548696	59548896	-	1	NA	NA	NA	32532	NM_001013771	381260	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0.010000	0.467662	
mm_134492.1	chr16	18733134	18733334	-	1	NA	NA	NA	-43613	NM_013805	12741	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	0.035000	0.522388	
mm_158253.1	chrX	108748135	108748335	-	1	NA	NA	NA	86120	NM_001081477	382236	Mm.100112	NM_001081477	ENSMUSG00000063663	Brwd3	Brodl|D030064D06Rik|Gm596	bromodomain and WD repeat domain containing 3	protein-coding	0.000000	0.422886	
mm_90931.1	chr10	12868197	12868397	-	1	NA	NA	NA	-6562	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.065000	0.706468	
mm_108761.1	chr12	89290492	89290692	+	1	NA	NA	NA	337202	NM_172544	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.000000	0.303483	78(GAACATAAAAGG,-,0.00)
mm_30075.1	chr3	137981456	137981656	-	1	NA	NA	NA	-7	NM_001310753	26377	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.030000	0.597015	
mm_47239.1	chr5	121503319	121503519	-	1	NA	NA	NA	-439	NM_172125	280667	Mm.444773	NM_172125	ENSMUSG00000062438	Adam1b	Adam1|Ftna	a disintegrin and metallopeptidase domain 1b	protein-coding	0.010000	0.517413	
mm_122843.1	chr14	54724701	54724901	-	1	NA	NA	NA	-12627	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.000000	0.502488	
mm_955.1	chr1	57774844	57775044	+	1	NA	NA	NA	83	NM_144882	67198	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.130000	0.761194	
mm_151790.1	chr19	5394259	5394459	-	1	NA	NA	NA	-5656	NM_016882	20227	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	0.035000	0.656716	
mm_115620.1	chr13	12082414	12082614	-	1	NA	NA	NA	24431	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.000000	0.462687	
mm_20029.1	chr2	119546786	119546986	-	1	NA	NA	NA	741	NM_172857	241624	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	0.045000	0.477612	
mm_156497.1	chrX	144336596	144336796	+	1	NA	NA	NA	18730	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.010000	0.373134	
mm_139798.1	chr17	66005648	66005848	+	1	NA	NA	NA	-54561	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.030000	0.562189	
mm_75201.1	chr8	39598280	39598480	-	1	NA	NA	NA	44298	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.402985	
mm_169672.1	chr15	63613222	63613422	+	1	NA	NA	NA	-133714	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA	0.005000	0.393035	
mm_24098.1	chr3	88055029	88055229	+	1	NA	NA	NA	3366	NM_144897	246703	Mm.205996	NM_144897	ENSMUSG00000028070	Apoa1bp	AA087124|AI-BP|AIBP|Apoa1ip|ESTM37|Naxe	apolipoprotein A-I binding protein	protein-coding	0.015000	0.522388	
mm_89818.1	chr10	104746854	104747054	+	1	NA	NA	NA	459685	NR_105838	102465222		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA	0.000000	0.412935	-18(TTCCATAAAAGA,-,0.00)
mm_14728.1	chr2	144165407	144165607	+	1	NA	NA	NA	23783	NR_136884	433481	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.065000	0.666667	
mm_94140.1	chr10	128720615	128720815	-	1	NA	NA	NA	14457	NM_021882	20431	Mm.16756	NM_021882	ENSMUSG00000025359	Pmel	D10H12S53E|D12S53Eh|Pmel17|Si|Silv|gp100|gp87	premelanosome protein	protein-coding	0.020000	0.522388	
mm_47365.1	chr5	122914938	122915138	-	1	NA	NA	NA	-14688	NM_013910	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.000000	0.437811	
mm_2982.1	chr1	133131175	133131375	+	1	NA	NA	NA	109	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.100000	0.681592	
mm_46918.1	chr5	114658272	114658472	-	1	NA	NA	NA	49	NM_022017	63873	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.140000	0.776119	
mm_34842.1	chr4	155409134	155409334	+	1	NA	NA	NA	44	NM_001166029	544678	Mm.472798	NM_177674	ENSMUSG00000078490	Cfap74	2010015L04Rik|A530045M11	cilia and flagella associated protein 74	protein-coding	0.075000	0.656716	
mm_26058.1	chr3	135826007	135826207	+	1	NA	NA	NA	317	NM_001135150	67547	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.055000	0.611940	
mm_98235.1	chr11	88099129	88099329	+	1	NA	NA	NA	83	NM_198013	103841	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	0.165000	0.805970	
mm_167687.1	chr9	85842615	85842815	+	1	NA	NA	NA	-137	NM_001164792	21983	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	0.055000	0.666667	
mm_59186.1	chr7	24474100	24474300	+	1	NA	NA	NA	-7823	NM_153112	260299	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	0.030000	0.477612	
mm_167032.1	chr7	70990545	70990745	+	1	NA	NA	NA	-623899	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.000000	0.313433	
mm_102457.1	chr11	59839186	59839386	-	1	NA	NA	NA	481	NM_011991	26572	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	0.060000	0.636816	34(TCTTTTCTAGGC,+,0.00)
mm_119512.1	chr14	47385456	47385656	+	1	NA	NA	NA	11696	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.025000	0.472637	
mm_99927.1	chr11	110996958	110997158	+	1	NA	NA	NA	-429	NM_001252209	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.005000	0.477612	
mm_15950.1	chr2	165969006	165969206	+	1	NA	NA	NA	-23531	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.010000	0.512438	
mm_9775.1	chr1	181093689	181093889	-	1	NA	NA	NA	42552	NM_001033819	619326	Mm.355174	NM_001033819	ENSMUSG00000038768	9130409I23Rik	-	RIKEN cDNA 9130409I23 gene	protein-coding	0.010000	0.417910	
mm_87643.1	chr10	58375056	58375256	+	1	NA	NA	NA	3702	NM_201242	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.005000	0.368159	
mm_173191.1	chrX	61874022	61874222	-	1	NA	NA	NA	164506	NM_001018087	434784	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Sirh7	leucine zipper, down-regulated in cancer 1	protein-coding	0.025000	0.477612	-62(CACTTTTTATGG,-,0.00),-60(CTTTTTATGGAT,+,0.00)
mm_168949.1	chr12	76795295	76795495	-	1	NA	NA	NA	159	NM_030677	14776	Mm.441856	NM_030677	ENSMUSG00000042808	Gpx2	GI-GPx|GPx-GI|GSHPx-2|GSHPx-GI	glutathione peroxidase 2	protein-coding	0.035000	0.527363	
mm_51811.1	chr6	88835109	88835309	+	1	NA	NA	NA	6726	NM_030251	80283	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.015000	0.542289	
mm_16434.1	chr2	180394289	180394489	+	1	NA	NA	NA	-3990	NR_029901	723954		NR_029901	ENSMUSG00000065460	Mir133a-2	Mirn133a-2|mir-133a-2	microRNA 133a-2	ncRNA	0.000000	0.477612	
mm_7467.1	chr1	120484711	120484911	-	1	NA	NA	NA	20273	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.005000	0.562189	
mm_124338.1	chr14	103844157	103844357	-	1	NA	NA	NA	219	NM_001136061	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.035000	0.577114	
mm_73574.1	chr8	109778472	109778672	+	1	NA	NA	NA	-11	NM_009677	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0.100000	0.671642	
mm_159940.1	chr6	82402822	82403022	+	1	NA	NA	NA	447	NM_009313	21336	Mm.8055	NM_009313	ENSMUSG00000030043	Tacr1	Nk1r|Spr|Tac1r	tachykinin receptor 1	protein-coding	0.075000	0.626866	83(GGTTATAAAAGC,-,0.00)
mm_24743.1	chr3	95314749	95314949	+	1	NA	NA	NA	-341	NM_029789	76893	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.055000	0.606965	
mm_12509.1	chr2	71980966	71981166	+	1	NA	NA	NA	-149	NM_001204167	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.110000	0.711443	
mm_24842.1	chr3	95661782	95661982	+	1	NA	NA	NA	3161	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.000000	0.343284	
mm_18618.1	chr2	68471870	68472070	-	1	NA	NA	NA	11	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.135000	0.756219	
mm_81856.1	chr9	118703383	118703583	+	1	NA	NA	NA	-8209	NM_001113514	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.015000	0.477612	
mm_107340.1	chr12	32379128	32379328	+	1	NA	NA	NA	439	NM_001162903	72123	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.100000	0.686567	
mm_38163.1	chr4	135216570	135216770	-	1	NA	NA	NA	56090	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.015000	0.467662	
mm_54832.1	chr6	42585891	42586091	-	1	NA	NA	NA	11381	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.293532	
mm_148297.1	chr18	82618779	82618979	-	1	NA	NA	NA	64371	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.025000	0.562189	
mm_63002.1	chr7	120842730	120842930	+	1	NA	NA	NA	-1	NM_007908	13631	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.095000	0.726368	
mm_104058.1	chr11	86580335	86580535	-	1	NA	NA	NA	3723	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.000000	0.497512	-35(GGGCATAAATGG,-,0.00)
mm_82567.1	chr9	21077088	21077288	-	1	NA	NA	NA	-1600	NR_106050	102465656		NR_106050	ENSMUSG00000098907	Mir7082	Gm27933|mmu-mir-7082	microRNA 7082	ncRNA	0.005000	0.388060	
mm_151311.1	chr19	55804270	55804470	+	1	NA	NA	NA	62560	NM_001142923	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.015000	0.393035	
mm_165391.1	chr2	131855303	131855503	-	1	NA	NA	NA	4344	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	0.005000	0.482587	
mm_14357.1	chr2	129615475	129615675	+	1	NA	NA	NA	22406	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.010000	0.517413	
mm_46088.1	chr5	92346903	92347103	-	1	NA	NA	NA	1886	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.020000	0.482587	
mm_21401.1	chr2	157794146	157794346	-	1	NA	NA	NA	56845	NM_025680	66642	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	0.010000	0.497512	
mm_18465.1	chr2	62352055	62352255	-	1	NA	NA	NA	60076	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.010000	0.402985	
mm_138137.1	chr17	34198093	34198293	+	1	NA	NA	NA	-2	NM_010724	16913	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	0.045000	0.587065	
mm_85727.1	chr9	108339974	108340174	-	1	NA	NA	NA	994	NM_001329528	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.065000	0.587065	
mm_150947.1	chr19	46310118	46310318	+	1	NA	NA	NA	4288	NM_001177370	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.035000	0.572139	
mm_99595.1	chr11	104328487	104328687	+	1	NA	NA	NA	97151	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.015000	0.582090	
mm_108828.1	chr12	95747959	95748159	+	1	NA	NA	NA	55833	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.005000	0.358209	
mm_141956.1	chr17	35115580	35115780	-	1	NA	NA	NA	-280	NM_148939	266614	Mm.104680	NM_148939	ENSMUSG00000043807	Ly6g5b	-	lymphocyte antigen 6 complex, locus G5B	protein-coding	0.000000	0.562189	
mm_145230.1	chr18	50128201	50128401	+	1	NA	NA	NA	100	NM_008292	15488	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.105000	0.671642	
mm_68719.1	chr7	120095597	120095797	-	1	NA	NA	NA	-6729	NM_145586	233806	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	0.005000	0.527363	
mm_139618.1	chr17	57362459	57362659	+	1	NA	NA	NA	3873	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.398010	-42(TACTTTATAAAC,-,0.00)
mm_22334.1	chr2	180708991	180709191	-	1	NA	NA	NA	908	NM_177852	23856	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.015000	0.452736	
mm_158052.1	chrX	100594768	100594968	-	1	NA	NA	NA	1	NM_020621	57385	Mm.117118	NM_020621	ENSMUSG00000044359	P2ry4	P2Y4|P2Y4R	pyrimidinergic receptor P2Y, G-protein coupled, 4	protein-coding	0.020000	0.601990	
mm_62016.1	chr7	91488593	91488793	+	1	NA	NA	NA	397907	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.333333	
mm_109570.1	chr12	112106701	112106901	+	1	NA	NA	NA	118	NM_001081169	104816	Mm.77133	NM_001081169	ENSMUSG00000037686	Aspg	A530050D06Rik|AI429460|Gm690	asparaginase	protein-coding	0.030000	0.601990	
mm_44083.1	chr5	149157307	149157507	+	1	NA	NA	NA	-1215	NR_028061	667410	Mm.441522	NR_028061		Gm8615	EG667410	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.035000	0.532338	-34(GTTTTTAGAGAG,+,0.00)
mm_37585.1	chr4	126429311	126429511	-	1	NA	NA	NA	131	NM_153402	214150	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0.095000	0.661692	
mm_34011.1	chr4	137993360	137993560	+	1	NA	NA	NA	4	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.120000	0.666667	
mm_27034.1	chr3	26321554	26321754	-	1	NA	NA	NA	10255	NM_138666	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.308458	
mm_147842.1	chr18	63087378	63087578	-	1	NA	NA	NA	109562	NM_028017	108123	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0.005000	0.368159	
mm_71457.1	chr8	46521791	46521991	+	1	NA	NA	NA	-30178	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.005000	0.442786	
mm_103625.1	chr11	78697323	78697523	-	1	NA	NA	NA	2	NM_008702	18099	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0.125000	0.716418	
mm_158058.1	chrX	101059560	101059760	-	1	NA	NA	NA	-21	NM_001167997	83558	Mm.134024	NM_031384	ENSMUSG00000009670	Tex11	4930565P14Rik|BB024231|ZIP4H	testis expressed gene 11	protein-coding	0.090000	0.606965	
mm_104939.1	chr11	100112058	100112258	-	1	NA	NA	NA	-6532	NM_001174099	16673	Mm.306829	NM_008472	ENSMUSG00000020916	Krt36	HRa-1|K36|Krt1-22|Krt1-5|MHRa-1	keratin 36	protein-coding	0.015000	0.482587	78(GACCATAAAAGC,-,0.00)
mm_81455.1	chr9	109832966	109833166	+	1	NA	NA	NA	272	NM_018757	54369	Mm.12951	NM_018757	ENSMUSG00000032478	Nme6	nm23-M6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding	0.040000	0.507463	
mm_61093.1	chr7	51787343	51787543	+	1	NA	NA	NA	-74572	NM_001330608	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.005000	0.447761	-26(ATGTTTTAAAGG,-,0.00)
mm_81339.1	chr9	108524557	108524757	+	1	NA	NA	NA	7570	NM_175143	69232	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik	glutamine-rich 1	protein-coding	0.015000	0.412935	
mm_148071.1	chr18	72350299	72350499	-	1	NA	NA	NA	670	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.035000	0.552239	
mm_86413.1	chr10	3366448	3366648	+	1	NA	NA	NA	398	NM_133485	76142	Mm.308126	NM_133485	ENSMUSG00000040653	Ppp1r14c	6330514J04Rik|KEPI	protein phosphatase 1, regulatory (inhibitor) subunit 14c	protein-coding	0.095000	0.706468	-72(GCGTCTTTAAGG,-,0.00)
mm_73337.1	chr8	105304659	105304859	+	1	NA	NA	NA	-842	NM_172760	234683	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	0.010000	0.572139	45(CCTTTTCTGGTC,+,0.00)
mm_77391.1	chr8	120228025	120228225	-	1	NA	NA	NA	105	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.020000	0.611940	
mm_153347.1	chr19	39648954	39649154	-	1	NA	NA	NA	-12	NM_001024719	545288	Mm.297048	NM_001024719	ENSMUSG00000062624	Cyp2c67	C730004C24Rik	cytochrome P450, family 2, subfamily c, polypeptide 67	protein-coding	0.000000	0.407960	
mm_40585.1	chr5	64159955	64160155	+	1	NA	NA	NA	-205	NM_019636	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.065000	0.686567	
mm_17547.1	chr2	29890252	29890452	-	1	NA	NA	NA	289	NM_013615	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.060000	0.661692	
mm_96699.1	chr11	69633170	69633370	+	1	NA	NA	NA	299	NM_011814	23879	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0.105000	0.791045	
mm_162476.1	chr1	133350193	133350393	+	1	NA	NA	NA	-273	NM_031193	19702	Mm.220955	NM_031193		Ren2	Ren|Ren-2|Ren-B|Rn-2|Rnr	renin 2 tandem duplication of Ren1	protein-coding	0.000000	0.492537	
mm_78415.1	chr9	31018982	31019182	+	1	NA	NA	NA	-11562	NM_001115130	235132	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.000000	0.432836	
mm_13660.1	chr2	114055205	114055405	+	1	NA	NA	NA	909	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.025000	0.477612	
mm_148274.1	chr18	81927539	81927739	-	1	NA	NA	NA	64441	NR_039589	100628596		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.045000	0.552239	
mm_128608.1	chr15	58818031	58818231	-	1	NA	NA	NA	5296	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.005000	0.412935	
mm_143173.1	chr17	57227993	57228193	-	1	NA	NA	NA	43	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.015000	0.562189	-34(AGCCATATAAAG,-,0.00),-32(CCATATAAAGAG,+,0.00)
mm_96177.1	chr11	61651048	61651248	+	1	NA	NA	NA	-2173	NM_027817	71520	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.005000	0.368159	
mm_161602.1	chr16	37916270	37916470	+	1	NA	NA	NA	-126	NM_153394	239845	Mm.228018	NM_153394	ENSMUSG00000046961	Gpr156	Gababl	G protein-coupled receptor 156	protein-coding	0.105000	0.691542	
mm_64044.1	chr7	140835045	140835245	+	1	NA	NA	NA	7	NM_001347605	76974	Mm.272359	NM_029821	ENSMUSG00000025481	Urah	1190003J15Rik|2810420C16Rik	urate (5-hydroxyiso-) hydrolase	protein-coding	0.030000	0.606965	
mm_150205.1	chr19	32778063	32778263	+	1	NA	NA	NA	20586	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.005000	0.348259	
mm_7498.1	chr1	121430595	121430795	-	1	NA	NA	NA	-372	NM_029955	70829	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	0.020000	0.393035	
mm_131229.1	chr16	10411847	10412047	+	1	NA	NA	NA	9	NM_011955	26425	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	0.110000	0.686567	
mm_44618.1	chr5	25529531	25529731	-	1	NA	NA	NA	-387	NR_027388	73571	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0.080000	0.696517	
mm_107560.1	chr12	41732320	41732520	+	1	NA	NA	NA	-246363	NM_010733	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.005000	0.378109	
mm_112719.1	chr13	19190624	19190824	+	1	NA	NA	NA	205089	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.025000	0.422886	
mm_25464.1	chr3	108591378	108591578	+	1	NA	NA	NA	200	NM_181400	99512	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	0.140000	0.706468	
mm_47987.1	chr5	135934502	135934702	-	1	NA	NA	NA	39	NM_018871	22628	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.140000	0.711443	
mm_27161.1	chr3	33142956	33143156	-	1	NA	NA	NA	135	NM_001163516	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.175000	0.805970	
mm_29322.1	chr3	108017719	108017919	-	1	NA	NA	NA	154	NM_010358	14862	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	0.025000	0.532338	
mm_52889.1	chr6	122577785	122577985	+	1	NA	NA	NA	24076	NM_009645	11628	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.010000	0.323383	
mm_153886.1	chr19	46961823	46962023	-	1	NA	NA	NA	428	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.100000	0.716418	
mm_143770.1	chr17	81670052	81670252	-	1	NA	NA	NA	68235	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.140000	0.761194	
mm_115029.1	chr13	99247588	99247788	+	1	NA	NA	NA	62865	NM_001004149	238803	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.000000	0.482587	
mm_159501.1	chr4	43770803	43771003	-	1	NA	NA	NA	106	NM_019476	29849	Mm.88845	NM_019476	ENSMUSG00000044801	Olfr159	MOR262-5|Olfr37e|mOR37e	olfactory receptor 159	protein-coding	0.025000	0.567164	
mm_45330.1	chr5	65492888	65493088	-	1	NA	NA	NA	-153	NM_133697	68552	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.130000	0.741294	
mm_170187.1	chr17	63671651	63671851	-	1	NA	NA	NA	-171171	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.065000	0.651741	
mm_22816.1	chr3	27192039	27192239	+	1	NA	NA	NA	9135	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.025000	0.512438	
mm_88978.1	chr10	81559336	81559536	+	1	NA	NA	NA	-8	NR_074087	14797	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.155000	0.820896	
mm_83415.1	chr9	44878993	44879193	-	1	NA	NA	NA	2181	NM_001081049	214162	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	0.010000	0.462687	20(CCTTTTAAAAAT,+,0.00)
mm_148514.1	chr19	4231895	4232095	+	1	NA	NA	NA	102	NM_027196	69745	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0.025000	0.616915	
mm_121225.1	chr14	103055398	103055598	+	1	NA	NA	NA	8486	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.452736	
mm_136365.1	chr16	92797265	92797465	-	1	NA	NA	NA	28709	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.000000	0.447761	32(AGCTTTAAAAAA,-,0.00)
mm_161186.1	chr13	49090849	49091049	-	1	NA	NA	NA	57379	NM_029361	75607	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.030000	0.552239	
mm_137302.1	chr17	24850596	24850796	+	1	NA	NA	NA	29	NM_001159626	14651	Mm.43784	NM_024284	ENSMUSG00000024158	Hagh	BC019817|Glo-2|Glo2|Rsp29	hydroxyacyl glutathione hydrolase	protein-coding	0.135000	0.736318	
mm_104398.1	chr11	94507194	94507394	-	1	NA	NA	NA	-7320	NM_027984	71889	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	0.015000	0.552239	
mm_84743.1	chr9	75387866	75388066	-	1	NA	NA	NA	21393	NM_027418	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.005000	0.298507	
mm_148848.1	chr19	6384309	6384509	+	1	NA	NA	NA	1	NM_011224	19309	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0.025000	0.606965	
mm_7482.1	chr1	120531751	120531951	-	1	NA	NA	NA	-26767	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.005000	0.457711	
mm_98313.1	chr11	90035871	90036071	+	1	NA	NA	NA	5623	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.015000	0.417910	
mm_72507.1	chr8	83899991	83900191	+	1	NA	NA	NA	-7	NM_181039	330814	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0.120000	0.751244	
mm_162695.1	chr10	19939426	19939626	+	1	NA	NA	NA	5000	NM_008580	26408	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.035000	0.552239	
mm_53370.1	chr6	129408822	129409022	+	1	NA	NA	NA	60	NM_172732	232414	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0.010000	0.462687	
mm_120412.1	chr14	65266586	65266786	+	1	NA	NA	NA	-15	NM_015795	50759	Mm.65308	NM_015795	ENSMUSG00000034532	Fbxo16	4932435C24Rik|Fbx16	F-box protein 16	protein-coding	0.020000	0.537313	
mm_19010.1	chr2	76904771	76904971	-	1	NA	NA	NA	77676	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.010000	0.398010	46(TCTTTTATAACC,+,0.00)
mm_63212.1	chr7	126272384	126272584	+	1	NA	NA	NA	-135	NM_145587	104175	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.210000	0.840796	
mm_49471.1	chr6	29471409	29471609	+	1	NA	NA	NA	72	NM_001145360	668210	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	0.020000	0.537313	
mm_44043.1	chr5	147547972	147548172	+	1	NA	NA	NA	117492	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.005000	0.308458	
mm_112406.1	chr13	3548806	3549006	+	1	NA	NA	NA	10831	NM_008112	14569	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0.030000	0.422886	
mm_34161.1	chr4	139574567	139574767	+	1	NA	NA	NA	-53	NM_001205173	212632	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	0.085000	0.736318	
mm_32632.1	chr4	115000063	115000263	+	1	NA	NA	NA	45	NM_001304555	20460	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	0.100000	0.681592	
mm_96302.1	chr11	63157776	63157976	+	1	NA	NA	NA	25073	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.005000	0.393035	
mm_163680.1	chr13	92131454	92131654	-	1	NA	NA	NA	-143512	NM_009027	19418	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0.110000	0.696517	
mm_78662.1	chr9	40685865	40686065	+	1	NA	NA	NA	1	NM_133733	71566	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.050000	0.592040	
mm_92828.1	chr10	81482003	81482203	-	1	NA	NA	NA	606	NM_176954	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.035000	0.656716	
mm_120200.1	chr14	61648340	61648540	+	1	NA	NA	NA	-16330	NR_029733	387174		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0.140000	0.751244	
mm_48411.1	chr5	140262430	140262630	-	1	NA	NA	NA	59022	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.010000	0.482587	
mm_105263.1	chr11	102357067	102357267	-	1	NA	NA	NA	8114	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.050000	0.601990	
mm_160814.1	chr11	22512178	22512378	+	1	NA	NA	NA	-5	NM_153596	103765	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.060000	0.582090	-36(CGGCTTTAAAGC,-,0.00)
mm_83205.1	chr9	41876116	41876316	-	1	NA	NA	NA	248073	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.030000	0.502488	
mm_49008.1	chr6	4758249	4758449	+	1	NA	NA	NA	11043	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.000000	0.417910	
mm_79632.1	chr9	59539580	59539780	+	1	NA	NA	NA	140	NM_010421	15211	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.090000	0.671642	
mm_107313.1	chr12	31265154	31265354	+	1	NA	NA	NA	-40	NM_008482	16777	Mm.172674	NM_008482	ENSMUSG00000002900	Lamb1	C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1	laminin B1	protein-coding	0.060000	0.661692	
mm_110853.1	chr12	73284913	73285113	-	1	NA	NA	NA	1698	NM_029580	76357	Mm.311344	NM_029580	ENSMUSG00000034442	Trmt5	2610027O18Rik|mKIAA1393	TRM5 tRNA methyltransferase 5	protein-coding	0.035000	0.477612	-24(GCTTTTAAGAAG,+,0.00)
mm_149934.1	chr19	27019667	27019867	+	1	NA	NA	NA	133842	NM_001033407	329047	Mm.293289	NM_001033407	ENSMUSG00000074913	Gm815	-	predicted gene 815	protein-coding	0.000000	0.323383	
mm_3951.1	chr1	164061984	164062184	+	1	NA	NA	NA	8	NM_001164059	20343	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.015000	0.557214	
mm_97512.1	chr11	78499159	78499359	+	1	NA	NA	NA	139	NM_011707	22370	Mm.3667	NM_011707	ENSMUSG00000017344	Vtn	AI256434|Vn	vitronectin	protein-coding	0.015000	0.577114	
mm_66500.1	chr7	45062315	45062515	-	1	NA	NA	NA	-14	NM_001163684	66394	Mm.272139	NM_025533	ENSMUSG00000003421	Nosip	2310061K06Rik|CGI-25	nitric oxide synthase interacting protein	protein-coding	0.080000	0.537313	-53(GTTTTTAAACTC,+,0.00)
mm_34603.1	chr4	150237223	150237423	+	1	NA	NA	NA	-1	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.065000	0.626866	
mm_145716.1	chr18	62977843	62978043	+	1	NA	NA	NA	27	NM_028017	108123	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0.095000	0.621891	
mm_34938.1	chr4	155841072	155841272	+	1	NA	NA	NA	1492	NM_024263	74761	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	0.115000	0.611940	
mm_98521.1	chr11	94955314	94955514	+	1	NA	NA	NA	-12179	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.010000	0.497512	-34(CCTTAAATACAG,+,0.00)
mm_148318.1	chr18	83826694	83826894	-	1	NA	NA	NA	259768	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.020000	0.427861	
mm_18743.1	chr2	73214228	73214428	-	1	NA	NA	NA	119	NM_030091	67059	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	0.135000	0.726368	
mm_124083.1	chr14	78692121	78692321	-	1	NA	NA	NA	32868	NM_001081336	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.015000	0.547264	
mm_173322.1	chrY	90736903	90737103	+	1	NA	NA	NA	18047	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.477612	
mm_82443.1	chr9	15301399	15301599	-	1	NA	NA	NA	108	NM_133732	70984	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0.020000	0.527363	
mm_6687.1	chr1	80665179	80665379	-	1	NA	NA	NA	73	NM_001285927	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.010000	0.442786	70(CCATTTCAAGGC,+,0.00)
mm_53989.1	chr6	6871489	6871689	-	1	NA	NA	NA	-2056	NR_015388	320038	Mm.94021	NR_015388		Dlx6os1	A230055N17Rik|Dlx6as1|Evf-1|Evf-2|Evf1|Evf1/2|Evf2|Shhrs|mEvf-1	distal-less homeobox 6, opposite strand 1	ncRNA	0.015000	0.467662	
mm_29900.1	chr3	131470764	131470964	-	1	NA	NA	NA	-93904	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.015000	0.477612	-35(TACTTTATAAAG,-,0.00),-33(CTTTATAAAGGG,+,0.00),-33(CTTTATAAAGGG,-,0.00)
mm_168051.1	chrY	90811974	90812174	+	1	NA	NA	NA	26632	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.010000	0.482587	
mm_132872.1	chr16	48611749	48611949	+	1	NA	NA	NA	160107	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.005000	0.447761	
mm_52151.1	chr6	97994289	97994489	+	1	NA	NA	NA	2606	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.035000	0.517413	
mm_160146.1	chr7	39413265	39413465	-	1	NA	NA	NA	-205	NM_177890	330513	Mm.67238	NM_177890	ENSMUSG00000053742	Gm5114	4921507A12|EG330513	predicted gene 5114	protein-coding	0.000000	0.398010	
mm_50391.1	chr6	48707863	48708063	+	1	NA	NA	NA	281	NM_153175	231931	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	0.010000	0.472637	
mm_153246.1	chr19	36120000	36120200	-	1	NA	NA	NA	-256	NM_013468	107765	Mm.10279	NM_013468	ENSMUSG00000024803	Ankrd1	Alrp|CARP|Crap|MARP1	ankyrin repeat domain 1 (cardiac muscle)	protein-coding	0.050000	0.502488	
mm_45697.1	chr5	82124594	82124794	-	1	NA	NA	NA	19	NR_138557	67327	Mm.87058	NR_138557		1700031L13Rik	-	RIKEN cDNA 1700031L13 gene	ncRNA	0.005000	0.333333	
mm_108810.1	chr12	95162739	95162939	+	1	NA	NA	NA	-529387	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.015000	0.393035	
mm_70910.1	chr8	25687595	25687795	+	1	NA	NA	NA	-32353	NR_121642	71910	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	0.020000	0.398010	-70(GGGCTTAAAGGC,-,0.00),15(TCTTTAAAACTG,+,0.00)
mm_13901.1	chr2	120476803	120477003	+	1	NA	NA	NA	-6	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.025000	0.592040	-20(AGCTATATAGGC,-,0.00)
mm_106142.1	chr11	116529464	116529664	-	1	NA	NA	NA	-2347	NM_001172475	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.020000	0.482587	
mm_120704.1	chr14	70978392	70978592	+	1	NA	NA	NA	88385	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.020000	0.527363	
mm_49001.1	chr6	4756734	4756934	+	1	NA	NA	NA	9528	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.025000	0.487562	
mm_44392.1	chr5	17829417	17829617	-	1	NA	NA	NA	6379	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.010000	0.328358	
mm_57045.1	chr6	122342012	122342212	-	1	NA	NA	NA	-1885	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.005000	0.432836	
mm_151439.1	chr19	57360971	57361171	+	1	NA	NA	NA	62	NM_145505	226252	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	0.165000	0.786070	
mm_142268.1	chr17	39846432	39846632	-	1	NA	NA	NA	3535	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.060000	0.577114	
mm_20693.1	chr2	132792791	132792991	-	1	NA	NA	NA	11613	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.025000	0.587065	
mm_54259.1	chr6	28397845	28398045	-	1	NA	NA	NA	23779	NM_028900	74375	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	0.065000	0.567164	81(CTCTATAAAATG,-,0.00)
mm_161886.1	chr18	37751495	37751695	+	1	NA	NA	NA	-184	NM_033579	93704	Mm.247203	NM_033579	ENSMUSG00000104063	Pcdhgb7	-	protocadherin gamma subfamily B, 7	protein-coding	0.045000	0.557214	
mm_96877.1	chr11	70214916	70215116	+	1	NA	NA	NA	1106	NM_153081	216867	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0.065000	0.666667	
mm_98160.1	chr11	87662592	87662792	+	1	NA	NA	NA	-395	NM_172448	207742	Mm.440230	NM_172448	ENSMUSG00000034177	Rnf43	4732452J19Rik	ring finger protein 43	protein-coding	0.025000	0.537313	
mm_120856.1	chr14	75227972	75228172	+	1	NA	NA	NA	-14215	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.005000	0.482587	
mm_160490.1	chr8	126593513	126593713	-	1	NA	NA	NA	-177	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.240000	0.905473	
mm_23193.1	chr3	41024277	41024477	+	1	NA	NA	NA	58669	NM_027558	70804	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0.020000	0.383085	
mm_62108.1	chr7	96512522	96512722	+	1	NA	NA	NA	-170658	NR_046043	670727	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	OTTMUSG00000021245	predicted gene 15412	ncRNA	0.010000	0.582090	
mm_72602.1	chr8	84415393	84415593	+	1	NA	NA	NA	129	NM_001252061	12286	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.145000	0.796020	
mm_109862.1	chr12	4907143	4907343	-	1	NA	NA	NA	277	NM_145441	217379	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding	0.135000	0.751244	
mm_73948.1	chr8	120145155	120145355	+	1	NA	NA	NA	326	NM_001163760	234797	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.025000	0.572139	
mm_51855.1	chr6	90462525	90462725	+	1	NA	NA	NA	-1	NM_023184	66277	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.200000	0.810945	
mm_162228.1	chrX	148882459	148882659	+	1	NA	NA	NA	-17	NM_001114383	434865	Mm.473681	NM_001114383	ENSMUSG00000079387	Luzp4	ENSMUSG00000072927	leucine zipper protein 4	protein-coding	0.020000	0.567164	
mm_136809.1	chr17	12390147	12390347	+	1	NA	NA	NA	11638	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.015000	0.467662	
mm_42734.1	chr5	120629972	120630172	+	1	NA	NA	NA	4163	NM_001195094	546886	Mm.464847	NM_001195094	ENSMUSG00000094282	Cfap73	Ccdc42b|Gm5988	cilia and flagella associated protein 73	protein-coding	0.065000	0.601990	
mm_35035.1	chr4	4133749	4133949	-	1	NA	NA	NA	4596	NM_001002927	18619	Mm.475097	NM_001002927	ENSMUSG00000045573	Penk	AI326464|ENK|PPA|Penk1	preproenkephalin	protein-coding	0.035000	0.517413	
mm_115633.1	chr13	12200311	12200511	-	1	NA	NA	NA	-13923	NR_045170	328186	Mm.188154	NM_183202		Gm10336	B330003H21|ENSMUSG00000071543	predicted gene 10336	ncRNA	0.035000	0.442786	
mm_16497.1	chr2	181187544	181187744	+	1	NA	NA	NA	301	NM_025598	66496	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0.085000	0.651741	
mm_88217.1	chr10	70246324	70246524	+	1	NA	NA	NA	1148	NM_025807	66859	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.035000	0.457711	
mm_52270.1	chr6	108473022	108473222	+	1	NA	NA	NA	-16621	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.010000	0.457711	
mm_172991.1	chrM	1220	1420	+	1	NA	NA	NA	NA	NA									0.015000	0.323383	
mm_158296.1	chrX	113185404	113185604	-	1	NA	NA	NA	11	NM_018818	12662	Mm.257316	NM_018818	ENSMUSG00000025531	Chm	Rep-1	choroidermia (RAB escort protein 1)	protein-coding	0.030000	0.442786	
mm_90326.1	chr10	127075264	127075464	+	1	NA	NA	NA	-3543	NM_001301014	216439	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.025000	0.592040	
mm_27250.1	chr3	36690045	36690245	-	1	NA	NA	NA	22	NM_019510	22065	Mm.74363	NM_019510	ENSMUSG00000027716	Trpc3	Mwk|Trcp3|Trp3|Trrp3	transient receptor potential cation channel, subfamily C, member 3	protein-coding	0.130000	0.751244	
mm_157857.1	chrX	75084823	75085023	-	1	NA	NA	NA	-18	NM_181584	210710	Mm.267056	NM_181584	ENSMUSG00000032750	Gab3	5930433H21Rik	growth factor receptor bound protein 2-associated protein 3	protein-coding	0.040000	0.661692	
mm_58156.1	chr6	142472702	142472902	-	1	NA	NA	NA	307	NM_145572	232493	Mm.275975	NM_145572	ENSMUSG00000030244	Gys2	BC021322|LGS	glycogen synthase 2	protein-coding	0.015000	0.537313	
mm_70722.1	chr8	16433071	16433271	+	1	NA	NA	NA	-264333	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0.005000	0.437811	
mm_168447.1	chr11	40721546	40721746	-	1	NA	NA	NA	11791	NM_013552	15366	Mm.116997	NM_013552	ENSMUSG00000020330	Hmmr	AA386826|CD168|Rhamm	hyaluronan mediated motility receptor (RHAMM)	protein-coding	0.005000	0.452736	
mm_151256.1	chr19	53944754	53944954	+	1	NA	NA	NA	-22	NM_019658	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.085000	0.746269	
mm_14825.1	chr2	147013763	147013963	+	1	NA	NA	NA	803	NM_011917	24128	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	0.045000	0.427861	
mm_143815.1	chr17	83831778	83831978	-	1	NA	NA	NA	14912	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.005000	0.542289	
mm_110792.1	chr12	72085248	72085448	-	1	NA	NA	NA	-35	NM_026038	67217	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	0.060000	0.616915	
mm_29741.1	chr3	126922838	126923038	-	1	NA	NA	NA	20448	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.015000	0.422886	
mm_114513.1	chr13	72628740	72628940	+	1	NA	NA	NA	43	NM_010574	16372	Mm.28888	NM_010574	ENSMUSG00000001504	Irx2	-	Iroquois related homeobox 2 (Drosophila)	protein-coding	0.120000	0.686567	
mm_25548.1	chr3	115888121	115888321	+	1	NA	NA	NA	38	NM_027193	69740	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	0.050000	0.487562	
mm_48025.1	chr5	136244840	136245040	-	1	NA	NA	NA	0	NM_001302939	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.120000	0.761194	
mm_117303.1	chr13	67332439	67332639	-	1	NA	NA	NA	21	NM_177622	218314	Mm.289695	NM_177622	ENSMUSG00000057842	Zfp595	A230042K10Rik|Rslcan23	zinc finger protein 595	protein-coding	0.035000	0.487562	
mm_27993.1	chr3	82274604	82274804	-	1	NA	NA	NA	-83368	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0.015000	0.492537	-5(GCTTTTATGCTG,+,0.00)
mm_135115.1	chr16	35837832	35838032	-	1	NA	NA	NA	33450	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.000000	0.393035	
mm_143716.1	chr17	80933388	80933588	-	1	NA	NA	NA	-11144	NM_026516	68027	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0.020000	0.502488	
mm_143708.1	chr17	80679950	80680150	-	1	NA	NA	NA	47975	NM_001290345	225028	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.000000	0.393035	
mm_17714.1	chr2	32385962	32386162	-	1	NA	NA	NA	1677	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.010000	0.537313	
mm_144661.1	chr18	34315055	34315255	+	1	NA	NA	NA	-15990	NM_025527	66384	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	0.015000	0.427861	
mm_134642.1	chr16	21762898	21763098	-	1	NA	NA	NA	24836	NM_023737	74147	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0.020000	0.542289	
mm_159188.1	chr2	116879178	116879378	+	1	NA	NA	NA	587	NM_026104	67356	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	0.015000	0.462687	
mm_162473.1	chr1	133098550	133098750	+	1	NA	NA	NA	-32516	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.020000	0.527363	
mm_6466.1	chr1	74035238	74035438	-	1	NA	NA	NA	89109	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.015000	0.527363	
mm_22929.1	chr3	31149679	31149879	+	1	NA	NA	NA	-141	NM_008770	18417	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.070000	0.631841	
mm_98348.1	chr11	93341412	93341612	+	1	NA	NA	NA	242222	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	0.000000	0.338308	-98(CTTTTTATAACC,+,0.00)
mm_92099.1	chr10	62892758	62892958	-	1	NA	NA	NA	-12844	NM_001253857	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.010000	0.482587	
mm_29026.1	chr3	102165802	102166002	-	1	NA	NA	NA	38791	NM_177545	229658	Mm.118004	NM_177545	ENSMUSG00000027860	Vangl1	Kitenin|Lpp2|Stb2|Stbm	vang-like 1 (van gogh, Drosophila)	protein-coding	0.035000	0.547264	
mm_146361.1	chr18	82584198	82584398	+	1	NA	NA	NA	29790	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.055000	0.497512	
mm_137965.1	chr17	33432205	33432405	+	1	NA	NA	NA	-594	NM_183282	69481	Mm.154333	NM_183282	ENSMUSG00000092519	Actl9	1700029I08Rik|AV259599	actin-like 9	protein-coding	0.010000	0.472637	
mm_78376.1	chr9	27397147	27397347	+	1	NA	NA	NA	35	NM_001305058	75469	Mm.45824	NM_029299	ENSMUSG00000031991	Spata19	1700001L23Rik|AV047838|spergen-1	spermatogenesis associated 19	protein-coding	0.010000	0.407960	
mm_111044.1	chr12	79642742	79642942	-	1	NA	NA	NA	281891	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.025000	0.462687	
mm_69098.1	chr7	127019696	127019896	-	1	NA	NA	NA	1415	NM_001102563	69017	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.015000	0.577114	
mm_28678.1	chr3	95315085	95315285	-	1	NA	NA	NA	-5	NM_029789	76893	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.115000	0.771144	
mm_139105.1	chr17	47267273	47267473	+	1	NA	NA	NA	37143	NM_172622	224829	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.030000	0.557214	
mm_84674.1	chr9	72046978	72047178	-	1	NA	NA	NA	64123	NM_001253862	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.005000	0.298507	-78(CTTTTTAAAAAG,+,0.00),-78(CTTTTTAAAAAG,-,0.00)
mm_49681.1	chr6	32511085	32511285	+	1	NA	NA	NA	44	NR_040277	319849	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.030000	0.567164	
mm_3746.1	chr1	155558425	155558625	+	1	NA	NA	NA	405	NM_026683	72482	Mm.288249	NM_026683	ENSMUSG00000033701	Acbd6	0610010G04Rik|2610100E10Rik	acyl-Coenzyme A binding domain containing 6	protein-coding	0.115000	0.726368	
mm_27512.1	chr3	56059200	56059400	-	1	NA	NA	NA	124401	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.015000	0.442786	
mm_86332.1	chr9	123085183	123085383	-	1	NA	NA	NA	27922	NM_026917	69035	Mm.28300	NM_026917	ENSMUSG00000025786	Zdhhc3	1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373	zinc finger, DHHC domain containing 3	protein-coding	0.020000	0.477612	
mm_19739.1	chr2	104712545	104712745	-	1	NA	NA	NA	-483	NM_177190	320554	Mm.249065	NM_177190	ENSMUSG00000027175	Tcp11l1	C130096D04Rik	t-complex 11 like 1	protein-coding	0.030000	0.517413	
mm_46585.1	chr5	107687908	107688108	-	1	NA	NA	NA	15472	NR_045871	654809	Mm.399159	NR_045871	ENSMUSG00000106333	4930428O21Rik	-	RIKEN cDNA 4930428O21 gene	ncRNA	0.095000	0.691542	
mm_36191.1	chr4	62313830	62314030	-	1	NA	NA	NA	22383	NM_001290518	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.015000	0.532338	
mm_113489.1	chr13	37378482	37378682	+	1	NA	NA	NA	33237	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.005000	0.402985	
mm_89815.1	chr10	104267443	104267643	+	1	NA	NA	NA	-19726	NR_105838	102465222		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA	0.005000	0.447761	
mm_7629.1	chr1	127677790	127677990	-	1	NA	NA	NA	131	NM_028135	72160	Mm.281287	NM_028135	ENSMUSG00000026347	Tmem163	2610024A01Rik|SV31	transmembrane protein 163	protein-coding	0.105000	0.741294	
mm_47172.1	chr5	120744205	120744405	-	1	NA	NA	NA	5543	NM_145227	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.000000	0.388060	
mm_48746.1	chr5	147894682	147894882	-	1	NA	NA	NA	20	NM_027872	71706	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	0.075000	0.616915	
mm_111560.1	chr12	101083585	101083785	-	1	NA	NA	NA	17	NM_211355	68734	Mm.87077	NM_211355	ENSMUSG00000041846	Smek1	1110034C04Rik|BC064465|Ppp4r3a|mKIAA2010	SMEK homolog 1, suppressor of mek1 (Dictyostelium)	protein-coding	0.150000	0.721393	
mm_123481.1	chr14	65981332	65981532	-	1	NA	NA	NA	12949	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.020000	0.552239	
mm_70144.1	chr7	143458683	143458883	-	1	NA	NA	NA	2267	NM_009876	12577	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.015000	0.348259	
mm_19881.1	chr2	114049516	114049716	-	1	NA	NA	NA	3259	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.025000	0.477612	
mm_88941.1	chr10	81319421	81319621	+	1	NA	NA	NA	-1582	NM_027381	70312	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.025000	0.597015	
mm_132347.1	chr16	33887261	33887461	+	1	NA	NA	NA	57696	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.010000	0.522388	-6(TTTTTTAAAGGC,+,0.00)
mm_68169.1	chr7	103813648	103813848	-	1	NA	NA	NA	175	NM_016956	15130	Mm.288567	NM_016956		Hbb-b2	AI036344|Hbb2|Hbbt2|beta2	hemoglobin, beta adult minor chain	protein-coding	0.010000	0.537313	77(CCCTTTTTAGGC,-,0.00)
mm_132712.1	chr16	43503401	43503601	+	1	NA	NA	NA	-83305	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.020000	0.527363	
mm_30674.1	chr4	11159219	11159419	+	1	NA	NA	NA	2878	NM_021897	60599	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.005000	0.383085	
mm_172044.1	chr6	128313237	128313437	+	1	NA	NA	NA	-12524	NM_011567	21679	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	0.035000	0.472637	
mm_32669.1	chr4	115652220	115652420	+	1	NA	NA	NA	-4615	NM_007823	13120	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	0.015000	0.477612	
mm_73014.1	chr8	93966770	93966970	+	1	NA	NA	NA	45770	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.025000	0.502488	
mm_155115.1	chrX	48623664	48623864	+	1	NA	NA	NA	90	NM_001166450	20523	Mm.34953	NM_011398	ENSMUSG00000031105	Slc25a14	BMCP1|UCP5|UCP5L|UCP5S	solute carrier family 25 (mitochondrial carrier, brain), member 14	protein-coding	0.065000	0.606965	
mm_44449.1	chr5	21701268	21701468	-	1	NA	NA	NA	-23	NM_178728	242864	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	0.115000	0.676617	
mm_23004.1	chr3	34104342	34104542	+	1	NA	NA	NA	-23088	NM_026332	67713	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.030000	0.467662	
mm_77304.1	chr8	117461157	117461357	-	1	NA	NA	NA	1992	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.020000	0.293532	
mm_81602.1	chr9	110547590	110547790	+	1	NA	NA	NA	15093	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.010000	0.562189	
mm_141632.1	chr17	32947280	32947480	-	1	NA	NA	NA	-19	NM_130882	170716	Mm.254838	NM_130882	ENSMUSG00000024055	Cyp4f13	0610030I10Rik|Cypf13	cytochrome P450, family 4, subfamily f, polypeptide 13	protein-coding	0.025000	0.567164	
mm_125345.1	chr15	39112856	39113056	+	1	NA	NA	NA	82	NM_198606	223499	Mm.321937	NM_198606	ENSMUSG00000022300	Dcaf13	Gm83|Wdsof1	DDB1 and CUL4 associated factor 13	protein-coding	0.075000	0.587065	-16(CGGTTTAAAGGC,-,0.00)
mm_117754.1	chr13	95961390	95961590	-	1	NA	NA	NA	-69568	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.060000	0.512438	
mm_172734.1	chr8	78146804	78147004	-	1	NA	NA	NA	-66438	NM_183096	73301	Mm.61243	NM_183096	ENSMUSG00000037101	Ttc29	1700031F13Rik	tetratricopeptide repeat domain 29	protein-coding	0.080000	0.557214	
mm_49328.1	chr6	21215242	21215442	+	1	NA	NA	NA	-767	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.050000	0.621891	
mm_43942.1	chr5	145127829	145128029	+	1	NA	NA	NA	12160	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.005000	0.497512	86(GCCTTTTAAAGA,-,0.00),87(CCTTTTAAAGAA,+,0.00)
mm_116120.1	chr13	28950465	28950665	-	1	NA	NA	NA	3117	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.020000	0.393035	
mm_76412.1	chr8	84893828	84894028	-	1	NA	NA	NA	-7	NM_008097	270076	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	0.025000	0.552239	67(CTCTTTTAAAAG,-,0.00),68(TCTTTTAAAAGG,+,0.00),68(TCTTTTAAAAGG,-,0.00),69(CTTTTAAAAGGC,+,0.00)
mm_31422.1	chr4	48051429	48051629	+	1	NA	NA	NA	283	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.045000	0.616915	
mm_101917.1	chr11	50200431	50200631	-	1	NA	NA	NA	10289	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.020000	0.537313	
mm_140358.1	chr17	86831383	86831583	+	1	NA	NA	NA	77619	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.005000	0.437811	
mm_95175.1	chr11	40755389	40755589	+	1	NA	NA	NA	-203	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.025000	0.482587	
mm_7272.1	chr1	96997493	96997693	-	1	NA	NA	NA	-33	NR_120500	67854	Mm.263706	NM_026413	ENSMUSG00000045463	Slco6b1	1700022M03Rik	solute carrier organic anion transporter family, member 6b1	ncRNA	0.035000	0.512438	
mm_125494.1	chr15	55112282	55112482	+	1	NA	NA	NA	65	NM_145470	97998	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	0.090000	0.676617	
mm_70634.1	chr8	13792049	13792249	+	1	NA	NA	NA	6534	NM_025924	67031	Mm.44858	NM_025924	ENSMUSG00000038398	Upf3a	2600001C03Rik|4930546M19Rik|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding	0.030000	0.482587	
mm_39984.1	chr5	32459226	32459426	+	1	NA	NA	NA	356	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.125000	0.701493	
mm_57522.1	chr6	125573232	125573432	-	1	NA	NA	NA	20384	NM_011708	22371	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.025000	0.512438	
mm_44156.1	chr5	150496886	150497086	+	1	NA	NA	NA	5233	NR_024513	194292	Mm.300184	NR_024513		Gm5	Gm1812	predicted gene 5	ncRNA	0.000000	0.442786	
mm_168233.1	chr10	81648957	81649157	+	1	NA	NA	NA	-12	NM_001142963	100233208	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	ENSMUSG00000074860	predicted gene 10778	protein-coding	0.045000	0.582090	
mm_159699.1	chr5	26121274	26121474	-	1	NA	NA	NA	51	NM_001134299	434689	Mm.484129	NM_001134299	ENSMUSG00000067698	Gm10220	ENSMUSG00000067698	predicted gene 10220	protein-coding	0.015000	0.502488	
mm_121318.1	chr14	111674792	111674992	+	1	NA	NA	NA	-223	NM_198865	75409	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0.070000	0.656716	
mm_106422.1	chr11	119252398	119252598	-	1	NA	NA	NA	-15465	NM_001159324	14387	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.030000	0.592040	
mm_81169.1	chr9	107299877	107300077	+	1	NA	NA	NA	3318	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.020000	0.597015	
mm_106606.1	chr11	120784096	120784296	-	1	NA	NA	NA	8	NM_009053	19719	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.165000	0.771144	-28(CACTCTTAAAGG,-,0.00),-25(TCTTAAAGGGGC,+,0.00)
mm_49275.1	chr6	17636910	17637110	+	1	NA	NA	NA	-88	NM_007604	12343	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.145000	0.786070	
mm_16814.1	chr2	11332479	11332679	-	1	NA	NA	NA	-6910	NR_040369	100503147	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	OTTMUSG00000011311	predicted gene 13293	ncRNA	0.005000	0.457711	
mm_10096.1	chr2	3424065	3424265	+	1	NA	NA	NA	34	NM_001302684	227525	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0.050000	0.606965	
mm_88115.1	chr10	69212560	69212760	+	1	NA	NA	NA	3	NM_001081347	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.055000	0.626866	
mm_44388.1	chr5	17828889	17829089	-	1	NA	NA	NA	6907	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.020000	0.412935	
mm_141543.1	chr17	31870933	31871133	-	1	NA	NA	NA	-15241	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.035000	0.572139	
mm_26768.1	chr3	8913888	8914088	-	1	NA	NA	NA	9869	NM_025434	66230	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.000000	0.383085	
mm_48856.1	chr5	149636235	149636435	-	1	NA	NA	NA	1	NM_001347534	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.050000	0.567164	
mm_28676.1	chr3	95307354	95307554	-	1	NA	NA	NA	-278	NM_023628	71790	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	0.005000	0.597015	
mm_2751.1	chr1	128713094	128713294	+	1	NA	NA	NA	-120895	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.015000	0.502488	
mm_66734.1	chr7	46667277	46667477	-	1	NA	NA	NA	0	NM_001136084	21990	Mm.248684	NM_009414	ENSMUSG00000040046	Tph1	Tph	tryptophan hydroxylase 1	protein-coding	0.055000	0.577114	-33(TCCTATAAGAGG,-,0.00),2(CTCTTTAAACTC,+,0.00)
mm_9061.1	chr1	167393700	167393900	-	1	NA	NA	NA	-3	NM_025569	66447	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	0.080000	0.686567	
mm_88567.1	chr10	79665432	79665632	+	1	NA	NA	NA	958	NM_013591	17123	Mm.391556	NM_013591	ENSMUSG00000020310	Madcam1	AV211525	mucosal vascular addressin cell adhesion molecule 1	protein-coding	0.015000	0.606965	
mm_26251.1	chr3	141634482	141634682	+	1	NA	NA	NA	169018	NM_001293561	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.000000	0.517413	
mm_83483.1	chr9	45930299	45930499	-	1	NA	NA	NA	5659	NM_011526	21345	Mm.283283	NM_011526	ENSMUSG00000032085	Tagln	Sm22|Sm22a|Ws310	transgelin	protein-coding	0.020000	0.567164	
mm_146347.1	chr18	82539602	82539802	+	1	NA	NA	NA	-14761	NM_001025256	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.000000	0.412935	-87(GCATATATAGCA,+,0.00)
mm_159536.1	chr4	86811172	86811372	+	1	NA	NA	NA	46095	NM_009096	20104	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	0.005000	0.373134	
mm_105568.1	chr11	106578999	106579199	-	1	NA	NA	NA	33831	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.005000	0.492537	
mm_63233.1	chr7	126487161	126487361	+	1	NA	NA	NA	-94	NM_172745	233870	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	0.070000	0.592040	
mm_24658.1	chr3	94478260	94478460	+	1	NA	NA	NA	65	NM_001289620	78784	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.040000	0.661692	
mm_81934.1	chr9	120179946	120180146	+	1	NA	NA	NA	30304	NM_001039364	17433	Mm.486167	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.010000	0.368159	
mm_33196.1	chr4	126273921	126274121	+	1	NA	NA	NA	11616	NM_013718	27096	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	0.030000	0.562189	
mm_167044.1	chr7	80501112	80501312	+	1	NA	NA	NA	33786	NM_007550	12144	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ helicase-like	protein-coding	0.030000	0.517413	
mm_129357.1	chr15	77945673	77945873	-	1	NA	NA	NA	10949	NM_001168260	239554	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	0.020000	0.601990	
mm_124355.1	chr14	105115217	105115417	-	1	NA	NA	NA	-641	NR_040628	100502987	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0.005000	0.253731	
mm_73857.1	chr8	118283528	118283728	+	1	NA	NA	NA	17	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.060000	0.532338	
mm_127687.1	chr15	102971355	102971555	+	1	NA	NA	NA	-1895	NR_029722	723958		NR_029722	ENSMUSG00000065488	Mir196a-2	Mirn196a-2|mir-196a-2	microRNA 196a-2	ncRNA	0.005000	0.447761	
mm_5692.1	chr1	43186081	43186281	-	1	NA	NA	NA	10580	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.015000	0.467662	
mm_9576.1	chr1	173982745	173982945	-	1	NA	NA	NA	-1	NM_011940	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.015000	0.358209	
mm_125524.1	chr15	57695596	57695796	+	1	NA	NA	NA	1029	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.135000	0.751244	
mm_143297.1	chr17	65951041	65951241	-	1	NA	NA	NA	46	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.145000	0.820896	
mm_3440.1	chr1	150102560	150102760	+	1	NA	NA	NA	2629	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.432836	
mm_120521.1	chr14	66784430	66784630	+	1	NA	NA	NA	84070	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.010000	0.452736	
mm_85126.1	chr9	95511803	95512003	-	1	NA	NA	NA	93	NM_026476	67958	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0.100000	0.626866	
mm_11729.1	chr2	37443251	37443451	+	1	NA	NA	NA	66	NM_146121	227800	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	0.090000	0.661692	
mm_143572.1	chr17	74295405	74295605	-	1	NA	NA	NA	-642	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.115000	0.786070	
mm_103102.1	chr11	69940540	69940740	-	1	NA	NA	NA	4312	NM_001347634	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.040000	0.626866	
mm_119880.1	chr14	54891422	54891622	+	1	NA	NA	NA	-2621	NM_019402	54196	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	0.010000	0.492537	38(TCCTATATAAGT,-,0.00)
mm_3111.1	chr1	134560102	134560302	+	1	NA	NA	NA	24	NM_152895	75605	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0.115000	0.656716	
mm_166926.1	chr7	32542851	32543051	+	1	NA	NA	NA	101410	NM_001256066	384589	Mm.454021	NM_001256066	ENSMUSG00000078757	Scgb1b29	Abpa29|Abpa29_a7|EG384589|Gm5326	secretoglobin, family 1B, member 29	protein-coding	0.010000	0.552239	
mm_69726.1	chr7	140770126	140770326	-	1	NA	NA	NA	6394	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.015000	0.512438	
mm_89240.1	chr10	87853485	87853685	+	1	NA	NA	NA	-4680	NM_001314010	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.005000	0.417910	-30(AGCTATTTAAGG,-,0.00),-28(CTATTTAAGGCC,+,0.00)
mm_50774.1	chr6	53644291	53644491	+	1	NA	NA	NA	71017	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.005000	0.358209	
mm_49111.1	chr6	8396974	8397174	+	1	NA	NA	NA	112087	NR_040452	320312	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.005000	0.353234	
mm_172551.1	chr8	102784824	102785024	-	1	NA	NA	NA	187	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.100000	0.691542	
mm_172081.1	chr6	145932828	145933028	-	1	NA	NA	NA	1055	NM_001310837	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.080000	0.572139	
mm_83471.1	chr9	45779523	45779723	-	1	NA	NA	NA	49015	NM_001081373	214552	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	0.030000	0.572139	
mm_166493.1	chr5	150409056	150409256	+	1	NA	NA	NA	93063	NR_024513	194292	Mm.300184	NR_024513		Gm5	Gm1812	predicted gene 5	ncRNA	0.010000	0.601990	
mm_55860.1	chr6	83456314	83456514	-	1	NA	NA	NA	-22	NM_001347313	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.110000	0.771144	
mm_27094.1	chr3	30190005	30190205	-	1	NA	NA	NA	-176901	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.010000	0.268657	
mm_143808.1	chr17	83631813	83632013	-	1	NA	NA	NA	-18	NM_153512	225030	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.160000	0.791045	
mm_35263.1	chr4	19892297	19892497	-	1	NA	NA	NA	30169	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.000000	0.497512	
mm_106344.1	chr11	118393233	118393433	-	1	NA	NA	NA	8598	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.020000	0.557214	
mm_144524.1	chr18	25036973	25037173	+	1	NA	NA	NA	128892	NM_001142697	66648	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.000000	0.432836	
mm_162505.1	chr1	148978796	148978996	+	1	NA	NA	NA	943543	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.020000	0.492537	
mm_116238.1	chr13	33905059	33905259	-	1	NA	NA	NA	549	NM_148942	97848	Mm.272188	NM_148942	ENSMUSG00000052180	Serpinb6c	C76171|C76174|SPI3C|SPIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6c	protein-coding	0.010000	0.482587	-32(GCTTTTATAGAC,+,0.00)
mm_83826.1	chr9	53975197	53975397	-	1	NA	NA	NA	4	NM_177769	270162	Mm.259791	NM_177769	ENSMUSG00000041986	Elmod1	4831417L10|AI428506|AI834991	ELMO/CED-12 domain containing 1	protein-coding	0.100000	0.731343	
mm_171137.1	chr3	150072654	150072854	-	1	NA	NA	NA	798017	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.015000	0.611940	
mm_33632.1	chr4	132884440	132884640	+	1	NA	NA	NA	-82	NM_133887	100226	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	0.120000	0.661692	
mm_128415.1	chr15	44752157	44752357	-	1	NA	NA	NA	201	NM_178765	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding	0.030000	0.507463	
mm_20965.1	chr2	151970867	151971067	-	1	NA	NA	NA	2427	NM_001289151	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.045000	0.557214	
mm_44663.1	chr5	28467001	28467201	-	1	NA	NA	NA	0	NM_009170	20423	Mm.57202	NM_009170	ENSMUSG00000002633	Shh	9530036O11Rik|Dsh|Hhg1|Hx|Hxl3|M100081	sonic hedgehog	protein-coding	0.040000	0.492537	
mm_23213.1	chr3	41742553	41742753	+	1	NA	NA	NA	35	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.065000	0.547264	
mm_40792.1	chr5	67463812	67464012	+	1	NA	NA	NA	14	NR_015582	320479	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	0.040000	0.497512	-84(GACTTTAAAGAG,-,0.00)
mm_33450.1	chr4	130670104	130670304	+	1	NA	NA	NA	6845	NM_001159605	80912	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0.015000	0.368159	
mm_162315.1	chr1	37998164	37998364	+	1	NA	NA	NA	254	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.125000	0.701493	
mm_106167.1	chr11	116671464	116671664	-	1	NA	NA	NA	-96	NR_027821	66293	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	0.070000	0.552239	
mm_54324.1	chr6	30502457	30502657	-	1	NA	NA	NA	7216	NM_001347087	72649	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	0.030000	0.522388	
mm_95186.1	chr11	42421137	42421337	+	1	NA	NA	NA	-113	NM_001347314	14401	Mm.338723	NM_008070	ENSMUSG00000007653	Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding	0.040000	0.457711	
mm_126505.1	chr15	81802474	81802674	+	1	NA	NA	NA	-99	NM_153484	21685	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.035000	0.646766	
mm_13728.1	chr2	117886300	117886500	+	1	NA	NA	NA	64472	NR_040631	73938	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0.005000	0.368159	-71(GTTTATAAACAC,+,0.00)
mm_11054.1	chr2	27229442	27229642	+	1	NA	NA	NA	17761	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.005000	0.562189	
mm_150470.1	chr19	38480989	38481189	+	1	NA	NA	NA	-43108	NM_019588	74055	Mm.34031	NM_019588	ENSMUSG00000024998	Plce1	4933403A21Rik|PLCepsilon|Plce|mKIAA1516	phospholipase C, epsilon 1	protein-coding	0.195000	0.860697	
mm_87446.1	chr10	51481633	51481833	+	1	NA	NA	NA	1121	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.005000	0.477612	
mm_163193.1	chr11	94997770	94997970	+	1	NA	NA	NA	6658	NM_172261	217124	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.015000	0.542289	
mm_138453.1	chr17	35135797	35135997	+	1	NA	NA	NA	183	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.030000	0.542289	
mm_161471.1	chr15	79254612	79254812	-	1	NA	NA	NA	36	NM_020516	57274	Mm.441697	NM_020516	ENSMUSG00000032988	Slc16a8	Mct3	solute carrier family 16 (monocarboxylic acid transporters), member 8	protein-coding	0.015000	0.601990	
mm_74469.1	chr8	4258098	4258298	-	1	NA	NA	NA	1076	NM_183315	330695	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	0.020000	0.547264	
mm_30217.1	chr3	145018637	145018837	-	1	NA	NA	NA	14039	NM_017474	23844	Mm.33483	NM_017474	ENSMUSG00000028255	Clca1	Clca2|Clca3|gob-5|gob5	chloride channel accessory 1	protein-coding	0.045000	0.447761	
mm_25607.1	chr3	117575427	117575627	+	1	NA	NA	NA	300	NM_001305451	75769	Mm.72187	NM_029425	ENSMUSG00000033342	Plppr5	4833424O15Rik|Lppr5|PRG-5|Pap2d	phospholipid phosphatase related 5	protein-coding	0.120000	0.781095	
mm_32670.1	chr4	115737645	115737845	+	1	NA	NA	NA	-328	NM_172698	230648	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	0.085000	0.686567	
mm_170976.1	chr2	6840326	6840526	+	1	NA	NA	NA	31609	NM_001347094	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.060000	0.666667	
mm_7509.1	chr1	123623665	123623865	-	1	NA	NA	NA	421794	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.358209	-79(GCTTTTATAGTC,+,0.00)
mm_172192.1	chr6	51465124	51465324	-	1	NA	NA	NA	4670	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.015000	0.338308	-31(CTTTTTATAAAC,+,0.00)
mm_5800.1	chr1	52164619	52164819	-	1	NA	NA	NA	45097	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.005000	0.383085	
mm_96048.1	chr11	59559172	59559372	+	1	NA	NA	NA	12466	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.010000	0.388060	
mm_80425.1	chr9	77920083	77920283	+	1	NA	NA	NA	2818	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.000000	0.398010	
mm_115843.1	chr13	21287260	21287460	-	1	NA	NA	NA	5326	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.010000	0.502488	25(CCCCCTTAAAGA,-,0.00),26(CCCCTTAAAGAC,+,0.00),28(CCTTAAAGACTG,+,0.00)
mm_104994.1	chr11	100354034	100354234	-	1	NA	NA	NA	2007	NM_177981	15114	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.040000	0.547264	
mm_145016.1	chr18	38714225	38714425	+	1	NA	NA	NA	-113057	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.055000	0.577114	
mm_91436.1	chr10	33786626	33786826	-	1	NA	NA	NA	-4611	NM_001101452	215895	Mm.473684	NM_001101452	ENSMUSG00000090298	Sult3a2	EG215895|Gm4794	sulfotransferase family 3A, member 2	protein-coding	0.015000	0.432836	
mm_108044.1	chr12	73907865	73908065	+	1	NA	NA	NA	98	NM_001313919	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.155000	0.771144	
mm_107700.1	chr12	55446829	55447029	+	1	NA	NA	NA	45718	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.025000	0.552239	
mm_154792.1	chrX	13072716	13072916	+	1	NA	NA	NA	1318	NM_009481	22284	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	0.155000	0.736318	
mm_20060.1	chr2	120352878	120353078	-	1	NA	NA	NA	155	NM_178851	269338	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	0.075000	0.671642	
mm_1794.1	chr1	79776014	79776214	+	1	NA	NA	NA	96	NM_001081210	69163	Mm.238455	NM_001081210	ENSMUSG00000026248	Mrpl44	1810030E18Rik|5730593H20Rik|AI463302	mitochondrial ribosomal protein L44	protein-coding	0.080000	0.646766	
mm_152655.1	chr19	12794932	12795132	-	1	NA	NA	NA	1091	NR_024093	664779	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0.085000	0.671642	
mm_129713.1	chr15	81858695	81858895	-	1	NA	NA	NA	-469	NM_020507	57259	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.035000	0.552239	
mm_23088.1	chr3	36942296	36942496	+	1	NA	NA	NA	79290	NM_172679	229227	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0.020000	0.467662	78(CCTTTTAAGAGT,+,0.00)
mm_42002.1	chr5	107904455	107904655	+	1	NA	NA	NA	4027	NM_016980	100503670	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	0.015000	0.477612	
mm_101820.1	chr11	46690213	46690413	-	1	NA	NA	NA	44	NM_001161356	171284	Mm.234654	NM_134249	ENSMUSG00000040413	Timd2	AA816106|AU019358|AU019662|C78111|G9D3|TIM-2|Tim2	T cell immunoglobulin and mucin domain containing 2	protein-coding	0.010000	0.383085	
mm_125422.1	chr15	41848865	41849065	+	1	NA	NA	NA	18007	NM_001130164	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.005000	0.333333	
mm_9004.1	chr1	165848871	165849071	-	1	NA	NA	NA	60290	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.005000	0.542289	
mm_75210.1	chr8	39605278	39605478	-	1	NA	NA	NA	37300	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.288557	-28(AACTTTATAAGA,-,0.00)
mm_119577.1	chr14	50834661	50834861	+	1	NA	NA	NA	26815	NM_009632	11546	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0.005000	0.517413	
mm_73758.1	chr8	115110834	115111034	+	1	NA	NA	NA	595960	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.005000	0.328358	
mm_75271.1	chr8	40855455	40855655	-	1	NA	NA	NA	-6812	NM_007514	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.015000	0.462687	
mm_93810.1	chr10	121310896	121311096	-	1	NA	NA	NA	193	NM_029057	74694	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik	TBC1 domain family, member 30	protein-coding	0.135000	0.736318	
mm_98042.1	chr11	85492644	85492844	+	1	NA	NA	NA	139580	NM_001166643	192197	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.015000	0.353234	28(CCTTTTCAAGTG,+,0.00)
mm_131784.1	chr16	22896435	22896635	+	1	NA	NA	NA	-2149	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.005000	0.527363	
mm_15798.1	chr2	164456862	164457062	+	1	NA	NA	NA	-4009	NM_025575	66460	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0.025000	0.527363	
mm_44417.1	chr5	18006908	18007108	-	1	NA	NA	NA	44438	NM_001081143	242851	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.000000	0.393035	
mm_58353.1	chr6	147531195	147531395	-	1	NA	NA	NA	55424	NM_025911	67015	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding	0.005000	0.497512	
mm_45120.1	chr5	45832053	45832253	-	1	NA	NA	NA	24399	NM_172153	209707	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	0.005000	0.328358	
mm_91963.1	chr10	61273293	61273493	-	1	NA	NA	NA	45	NM_001081127	237360	Mm.333252	NM_001081127	ENSMUSG00000059901	Adamts14	Adamts-14|TS14	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 14	protein-coding	0.150000	0.815920	
mm_100421.1	chr11	119440808	119441008	+	1	NA	NA	NA	50436	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.005000	0.437811	
mm_52181.1	chr6	99340452	99340652	+	1	NA	NA	NA	-74037	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.030000	0.363184	-100(CCTTTAAGGCCA,+,0.00)
mm_140286.1	chr17	85189966	85190166	+	1	NA	NA	NA	99366	NM_028576	73582	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	0.005000	0.358209	
mm_27396.1	chr3	51211392	51211592	-	1	NA	NA	NA	-12955	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.015000	0.482587	
mm_14649.1	chr2	136910919	136911119	+	1	NA	NA	NA	11668	NM_001038641	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.015000	0.393035	
mm_110457.1	chr12	51691907	51692107	-	1	NA	NA	NA	-93	NM_052973	94186	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.105000	0.706468	
mm_57303.1	chr6	124636843	124637043	-	1	NA	NA	NA	-858	NM_173864	317677	Mm.483270	NM_173864	ENSMUSG00000079343	C1s2	C1sb|EG317677|Gm5077	complement component 1, s subcomponent 2	protein-coding	0.000000	0.507463	31(ATCTTTAAAAAG,-,0.00),33(CTTTAAAAAGCA,+,0.00)
mm_159153.1	chr2	88930139	88930339	-	1	NA	NA	NA	74	NM_001011804	258025	Mm.377332	NM_001011804	ENSMUSG00000075112	Olfr1211	MOR233-16P|MOR233-21	olfactory receptor 1211	protein-coding	0.000000	0.358209	
mm_149215.1	chr19	9984816	9985016	+	1	NA	NA	NA	2270	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.020000	0.512438	
mm_2997.1	chr1	133241098	133241298	+	1	NA	NA	NA	-4899	NM_001160268	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding	0.015000	0.562189	
mm_1097.1	chr1	59708920	59709120	+	1	NA	NA	NA	4212	NR_028521	100217421		NR_028521		Snord11	MBII-95	small nucleolar RNA, C/D box 11	snoRNA	0.010000	0.333333	
mm_119293.1	chr14	34673960	34674160	+	1	NA	NA	NA	132	NM_001301330	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.125000	0.741294	
mm_63271.1	chr7	126760621	126760821	+	1	NA	NA	NA	1095	NM_011952	26417	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.020000	0.577114	
mm_89792.1	chr10	102225603	102225803	+	1	NA	NA	NA	66624	NM_001162369	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.010000	0.328358	
mm_157001.1	chrX	7572223	7572423	-	1	NA	NA	NA	-1277	NR_029473	78185	Mm.160055	NR_029473	ENSMUSG00000039545	Ppp1r3fos	4930524L23Rik	protein phosphatase 1, regulatory subunit 3F, opposite strand	ncRNA	0.030000	0.447761	30(GCTTTTCTAGGT,+,0.00)
mm_49925.1	chr6	39379934	39380134	+	1	NA	NA	NA	-1394	NM_011226	19331	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	0.010000	0.432836	
mm_31870.1	chr4	80004415	80004615	+	1	NA	NA	NA	-829698	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.020000	0.422886	
mm_23152.1	chr3	40530918	40531118	+	1	NA	NA	NA	-8106	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.025000	0.537313	
mm_79581.1	chr9	58134991	58135191	+	1	NA	NA	NA	426	NM_001162479	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.010000	0.497512	-76(TTCCTTTTAAGC,-,0.00),-74(CCTTTTAAGCCT,+,0.00)
mm_52579.1	chr6	116628998	116629198	+	1	NA	NA	NA	-99	NM_026057	67255	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0.040000	0.557214	
mm_100950.1	chr11	6605507	6605707	-	1	NA	NA	NA	447	NM_001081652	192950	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	0.090000	0.706468	
mm_160909.1	chr11	82870677	82870877	-	1	NA	NA	NA	-33	NM_001164570	67338	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.050000	0.567164	
mm_116933.1	chr13	55831172	55831372	-	1	NA	NA	NA	153	NM_011097	18740	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.090000	0.701493	
mm_109082.1	chr12	104413548	104413748	+	1	NA	NA	NA	6940	NM_009252	20716	Mm.482074	NM_009252	ENSMUSG00000021091	Serpina3n	Spi2-2|Spi2.2|Spi2/eb.4	serine (or cysteine) peptidase inhibitor, clade A, member 3N	protein-coding	0.010000	0.487562	-74(CCCTTTATAGCC,+,0.00)
mm_120714.1	chr14	72709414	72709614	+	1	NA	NA	NA	489	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.175000	0.786070	
mm_50104.1	chr6	41533152	41533352	+	1	NA	NA	NA	11476	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.015000	0.497512	
mm_134398.1	chr16	17530945	17531145	-	1	NA	NA	NA	7	NM_026909	69009	Mm.10174	NM_026909	ENSMUSG00000022760	Thap7	1810004B07Rik	THAP domain containing 7	protein-coding	0.115000	0.651741	
mm_32409.1	chr4	106953415	106953615	+	1	NA	NA	NA	42045	NM_023672	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.000000	0.378109	-96(GTTTATAAAAAG,-,0.00)
mm_93054.1	chr10	88604925	88605125	-	1	NA	NA	NA	127	NM_001252372	109272	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0.025000	0.507463	
mm_91518.1	chr10	37138554	37138754	-	1	NA	NA	NA	272	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.065000	0.547264	
mm_25531.1	chr3	114904374	114904574	+	1	NA	NA	NA	-161	NM_001286750	229759	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding	0.020000	0.477612	
mm_146168.1	chr18	75278842	75279042	+	1	NA	NA	NA	18375	NR_045394	100503117	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.030000	0.507463	
mm_117506.1	chr13	78200315	78200515	-	1	NA	NA	NA	-1542	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.035000	0.467662	-71(CTCCATATAAGG,-,0.00),-69(CCATATAAGGCA,+,0.00)
mm_135860.1	chr16	59639314	59639514	-	1	NA	NA	NA	-5	NM_001347244	56297	Mm.392505	NM_019665	ENSMUSG00000022722	Arl6	1110018H24Rik|2210411E14Rik|BBS3	ADP-ribosylation factor-like 6	protein-coding	0.100000	0.686567	
mm_100837.1	chr11	5542135	5542335	-	1	NA	NA	NA	-18	NM_134033	104479	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	0.065000	0.606965	
mm_54388.1	chr6	31218378	31218578	-	1	NA	NA	NA	-4	NR_110469	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.045000	0.537313	
mm_97042.1	chr11	72308519	72308719	+	1	NA	NA	NA	-5825	NM_001099688	628100	Mm.390365	NM_001099688	ENSMUSG00000070388	Fbxo39	1700010H23Rik	F-box protein 39	protein-coding	0.025000	0.378109	60(GCATTTATGGAC,+,0.00)
mm_73167.1	chr8	95020613	95020813	+	1	NA	NA	NA	3021	NM_173036	54672	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.015000	0.587065	
mm_17891.1	chr2	35061311	35061511	-	1	NA	NA	NA	30	NM_010406	15139	Mm.2168	NM_010406	ENSMUSG00000026874	Hc	C5|C5a|He	hemolytic complement	protein-coding	0.015000	0.388060	-33(TTATTTAAAAGG,-,0.00)
mm_153657.1	chr19	44394847	44395047	-	1	NA	NA	NA	12762	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.000000	0.442786	
mm_19832.1	chr2	112259197	112259397	-	1	NA	NA	NA	-6	NM_172521	213765	Mm.78965	NM_172521	ENSMUSG00000041358	Nutm1	4932438M10|Nut	NUT midline carcinoma, family member 1	protein-coding	0.000000	0.457711	
mm_27762.1	chr3	69673476	69673676	-	1	NA	NA	NA	-48479	NM_133787	97112	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0.030000	0.393035	
mm_101150.1	chr11	16742162	16742362	-	1	NA	NA	NA	-9941	NM_207655	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.000000	0.487562	
mm_159353.1	chr3	79144879	79145079	-	1	NA	NA	NA	-92	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.020000	0.447761	
mm_100561.1	chr11	120730179	120730379	+	1	NA	NA	NA	1742	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.015000	0.616915	
mm_65381.1	chr7	25090709	25090909	-	1	NA	NA	NA	6366	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.035000	0.562189	69(AGCTTTAAAAGA,-,0.00),70(GCTTTAAAAGAA,+,0.00)
mm_51141.1	chr6	70371339	70371539	+	1	NA	NA	NA	420736	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.005000	0.407960	
mm_72154.1	chr8	72152530	72152730	+	1	NA	NA	NA	-8570	NM_023126	17274	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	0.010000	0.417910	
mm_72022.1	chr8	70743011	70743211	+	1	NA	NA	NA	-11568	NM_001328047	19339	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0.050000	0.646766	-34(GCATCTAAAAAG,-,0.00)
mm_34799.1	chr4	154637478	154637678	+	1	NA	NA	NA	-705	NM_027504	70673	Mm.257785	NM_027504	ENSMUSG00000039410	Prdm16	5730557K01Rik|csp1|mel1	PR domain containing 16	protein-coding	0.140000	0.791045	
mm_103965.1	chr11	84491423	84491623	-	1	NA	NA	NA	21978	NM_019816	56321	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0.010000	0.447761	-100(TCATAAATAGCC,+,0.00)
mm_69465.1	chr7	133602104	133602304	-	1	NA	NA	NA	-89	NM_028654	73808	Mm.159067	NM_028654	ENSMUSG00000030976	Tex36	4930404H21Rik	testis expressed 36	protein-coding	0.005000	0.497512	
mm_92363.1	chr10	75939944	75940144	-	1	NA	NA	NA	628	NM_001277132	333670	Mm.291320	NM_001037714	ENSMUSG00000050157	Gm867	Gm736	predicted gene 867	protein-coding	0.035000	0.577114	
mm_10444.1	chr2	14263302	14263502	+	1	NA	NA	NA	2399	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.000000	0.467662	-67(GTTTTTAAATGC,+,0.00)
mm_88159.1	chr10	69705980	69706180	+	1	NA	NA	NA	172372	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.020000	0.467662	
mm_74816.1	chr8	22783346	22783546	-	1	NA	NA	NA	22208	NM_029505	64933	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	0.020000	0.577114	
mm_144347.1	chr18	15195127	15195327	+	1	NA	NA	NA	-43781	NM_134112	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.015000	0.447761	
mm_84984.1	chr9	85749232	85749432	-	1	NA	NA	NA	2	NM_001081282	108837	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.115000	0.686567	
mm_75398.1	chr8	46207463	46207663	-	1	NA	NA	NA	3446	NM_007450	11739	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	0.020000	0.447761	
mm_95150.1	chr11	35769289	35769489	+	1	NA	NA	NA	-106	NM_145962	211347	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0.070000	0.636816	
mm_116298.1	chr13	36620834	36621034	-	1	NA	NA	NA	113543	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.020000	0.477612	-33(GCCCATAAAAGG,-,0.00)
mm_67981.1	chr7	100662247	100662447	-	1	NA	NA	NA	47	NM_013746	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.025000	0.577114	
mm_11108.1	chr2	28192947	28193147	+	1	NA	NA	NA	-46	NM_001038613	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.145000	0.786070	
mm_89567.1	chr10	95417269	95417469	+	1	NA	NA	NA	-6	NR_045339	70523	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	0.050000	0.636816	
mm_75590.1	chr8	61591122	61591322	-	1	NA	NA	NA	-53	NM_001293774	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.065000	0.671642	
mm_106241.1	chr11	117780521	117780721	-	1	NA	NA	NA	0	NM_181321	217353	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.065000	0.621891	
mm_147090.1	chr18	35648374	35648574	-	1	NA	NA	NA	893	NM_027222	69816	Mm.27252	NM_027222	ENSMUSG00000024353	Mzb1	2010001M09Rik|AV064572|PACAP|pERp1	marginal zone B and B1 cell-specific protein 1	protein-coding	0.000000	0.626866	
mm_50629.1	chr6	50566635	50566835	+	1	NA	NA	NA	92	NR_027892	73183	Mm.430720	NR_015581	ENSMUSG00000085776	5430402O13Rik	3110047M22Rik	RIKEN cDNA 5430402O13 gene	ncRNA	0.085000	0.646766	
mm_47418.1	chr5	123140042	123140242	-	1	NA	NA	NA	-2051	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.030000	0.457711	
mm_119118.1	chr14	31072061	31072261	+	1	NA	NA	NA	53023	NM_001081251	66923	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	0.005000	0.323383	
mm_107678.1	chr12	54343640	54343840	+	1	NA	NA	NA	47578	NR_033689	665239	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.015000	0.417910	
mm_75383.1	chr8	45409798	45409998	-	1	NA	NA	NA	641	NM_126166	142980	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0.015000	0.398010	
mm_105632.1	chr11	106973007	106973207	-	1	NA	NA	NA	26418	NM_010655	16647	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.015000	0.442786	
mm_135286.1	chr16	38452544	38452744	-	1	NA	NA	NA	45	NM_007414	11544	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.120000	0.741294	
mm_83033.1	chr9	37255529	37255729	-	1	NA	NA	NA	109	NM_020258	56857	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.010000	0.477612	
mm_67767.1	chr7	92878658	92878858	-	1	NA	NA	NA	3505	NM_028243	72461	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.015000	0.517413	
mm_47968.1	chr5	135778266	135778466	-	1	NA	NA	NA	19	NM_029659	76571	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0.085000	0.651741	
mm_65694.1	chr7	28372562	28372762	-	1	NA	NA	NA	0	NM_138752	101497	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.090000	0.681592	-70(GGATTTTAAAAG,-,0.00),-69(GATTTTAAAAGC,-,0.00)
mm_151217.1	chr19	53676295	53676495	+	1	NA	NA	NA	-911	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.085000	0.666667	
mm_283.1	chr1	21262797	21262997	+	1	NA	NA	NA	22312	NM_010356	14859	Mm.394593	NM_010356	ENSMUSG00000025934	Gsta3	Gst2-3	glutathione S-transferase, alpha 3	protein-coding	0.015000	0.492537	
mm_107180.1	chr12	24982178	24982378	+	1	NA	NA	NA	7346	NM_001081378	77480	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	0.020000	0.358209	
mm_108339.1	chr12	80174367	80174567	+	1	NA	NA	NA	-41623	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.015000	0.442786	
mm_152691.1	chr19	16780835	16781035	-	1	NA	NA	NA	-2	NM_173028	271564	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.155000	0.751244	
mm_144728.1	chr18	35536443	35536643	+	1	NA	NA	NA	-16867	NR_038073	100503380	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	0.020000	0.457711	
mm_102792.1	chr11	68691640	68691840	-	1	NA	NA	NA	-175	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.065000	0.651741	
mm_48455.1	chr5	140760383	140760583	-	1	NA	NA	NA	36356	NM_173405	231842	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.035000	0.606965	
mm_12457.1	chr2	71262799	71262999	+	1	NA	NA	NA	50953	NM_010064	13427	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0.000000	0.313433	
mm_69666.1	chr7	139982724	139982924	-	1	NA	NA	NA	4050	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.005000	0.522388	
mm_137745.1	chr17	29376167	29376367	+	1	NA	NA	NA	15353	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.010000	0.452736	39(TCTTTTATAGCA,+,0.00)
mm_6689.1	chr1	80709288	80709488	-	1	NA	NA	NA	-44036	NM_001285927	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.040000	0.522388	
mm_31086.1	chr4	41631566	41631766	+	1	NA	NA	NA	8636	NM_027147	69638	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.015000	0.616915	
mm_157830.1	chrX	74245653	74245853	-	1	NA	NA	NA	781	NM_010227	192176	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	0.040000	0.606965	
mm_129173.1	chr15	76249808	76250008	-	1	NA	NA	NA	1717	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.010000	0.547264	
mm_131432.1	chr16	15887185	15887385	+	1	NA	NA	NA	-1	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.120000	0.741294	-33(GGCTAGAAAAGG,-,0.00)
mm_11930.1	chr2	52313737	52313937	+	1	NA	NA	NA	22835	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.010000	0.402985	
mm_108587.1	chr12	85288591	85288791	+	1	NA	NA	NA	100	NM_172414	72350	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	0.060000	0.597015	
mm_47827.1	chr5	134266501	134266701	-	1	NA	NA	NA	-36976	NR_104383	17969	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.055000	0.582090	
mm_28271.1	chr3	88762150	88762350	-	1	NA	NA	NA	10349	NM_018804	229521	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0.030000	0.557214	
mm_13359.1	chr2	103424028	103424228	+	1	NA	NA	NA	60	NM_010125	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.030000	0.477612	
mm_141621.1	chr17	32891457	32891657	-	1	NA	NA	NA	46	NM_207245	240066	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0.020000	0.512438	
mm_61633.1	chr7	80246454	80246654	+	1	NA	NA	NA	178	NM_177765	269954	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	0.095000	0.691542	
mm_53115.1	chr6	125096659	125096859	+	1	NA	NA	NA	-265	NR_106012	102466272		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	0.045000	0.691542	
mm_59146.1	chr7	24349119	24349319	+	1	NA	NA	NA	-5	NM_029806	76942	Mm.261468	NM_029806	ENSMUSG00000030484	Lypd5	2210003I03Rik	Ly6/Plaur domain containing 5	protein-coding	0.010000	0.616915	
mm_41438.1	chr5	90904255	90904455	+	1	NA	NA	NA	456	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.025000	0.527363	
mm_30583.1	chr4	5632236	5632436	+	1	NA	NA	NA	8	NR_038183	73872	Mm.427301	NR_038183	ENSMUSG00000086066	4930423M02Rik	-	RIKEN cDNA 4930423M02 gene	ncRNA	0.010000	0.487562	
mm_172735.1	chr8	78146939	78147139	-	1	NA	NA	NA	-66303	NM_183096	73301	Mm.61243	NM_183096	ENSMUSG00000037101	Ttc29	1700031F13Rik	tetratricopeptide repeat domain 29	protein-coding	0.055000	0.492537	
mm_146034.1	chr18	69521745	69521945	+	1	NA	NA	NA	176124	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.015000	0.452736	
mm_62981.1	chr7	120184414	120184614	+	1	NA	NA	NA	10656	NM_028085	72074	Mm.23165	NM_028085	ENSMUSG00000030909	Anks4b	2010013E14Rik|AI956809|Harp	ankyrin repeat and sterile alpha motif domain containing 4B	protein-coding	0.005000	0.452736	
mm_21819.1	chr2	165286452	165286652	-	1	NA	NA	NA	1235	NM_001252574	228875	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.020000	0.542289	
mm_173181.1	chrX	56902980	56903180	+	1	NA	NA	NA	-80755	NM_177293	320923	Mm.186745	NM_177293	ENSMUSG00000067878	Mtap7d3	4933424A10Rik|Map7d3	MAP7 domain containing 3	protein-coding	0.010000	0.258706	-100(TGCTTTAAATGA,-,0.00),24(TTTTTTATGCCC,+,0.00)
mm_95086.1	chr11	33512973	33513173	+	1	NA	NA	NA	673	NR_110973	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.075000	0.562189	8(CGCTCTAAAAGG,-,0.00)
mm_35866.1	chr4	49506402	49506602	-	1	NA	NA	NA	56	NM_007519	12012	Mm.2859	NM_007519	ENSMUSG00000039653	Baat	AI118337|AI158864|BAT	bile acid-Coenzyme A: amino acid N-acyltransferase	protein-coding	0.005000	0.402985	
mm_4977.1	chr1	191332008	191332208	+	1	NA	NA	NA	6143	NM_025864	66950	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0.000000	0.407960	83(CCCTTTCTGGCC,+,0.00)
mm_36149.1	chr4	59476182	59476382	-	1	NA	NA	NA	-37649	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.005000	0.348259	37(CTCTTTTTAAGA,-,0.00),39(CTTTTTAAGACC,+,0.00)
mm_10044.1	chr1	193130129	193130329	-	1	NA	NA	NA	22	NM_145415	215193	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	0.090000	0.582090	
mm_123277.1	chr14	61370810	61371010	-	1	NA	NA	NA	-10465	NM_026598	68177	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0.005000	0.333333	
mm_123737.1	chr14	70177638	70177838	-	1	NA	NA	NA	-66	NM_145978	213019	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0.045000	0.597015	
mm_124619.1	chr15	3279876	3280076	+	1	NA	NA	NA	8999	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.005000	0.358209	
mm_130511.1	chr15	98846087	98846287	-	1	NA	NA	NA	-14679	NM_016781	19082	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.020000	0.562189	
mm_146017.1	chr18	69437935	69438135	+	1	NA	NA	NA	92314	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.005000	0.378109	89(TATTTTAAAAGG,-,0.00)
mm_71898.1	chr8	70001341	70001541	+	1	NA	NA	NA	-5057	NM_145596	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.035000	0.606965	-98(GCCCATATAGGG,-,0.00)
mm_55690.1	chr6	72788951	72789151	-	1	NA	NA	NA	-6	NM_009332	21415	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.120000	0.746269	
mm_95503.1	chr11	51915563	51915763	+	1	NA	NA	NA	-51968	NM_029976	52626	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.005000	0.547264	
mm_171984.1	chr5	93019654	93019854	-	1	NA	NA	NA	25268	NM_175270	78088	Mm.245085	NM_175270	ENSMUSG00000045314	Sowahb	5730467H21Rik|Ankrd56	sosondowah ankyrin repeat domain family member B	protein-coding	0.005000	0.517413	-31(GCTTTAAGACCC,+,0.00)
mm_127062.1	chr15	97361103	97361303	+	1	NA	NA	NA	-113916	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.040000	0.572139	-96(CACCTTATAAAC,-,0.00),-94(CCTTATAAACTC,+,0.00)
mm_35931.1	chr4	53032314	53032514	-	1	NA	NA	NA	20534	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.030000	0.482587	
mm_35624.1	chr4	43454518	43454718	-	1	NA	NA	NA	8	NM_001110320	12517	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.025000	0.552239	
mm_37780.1	chr4	130175026	130175226	-	1	NA	NA	NA	-4	NM_023476	94242	Mm.15801	NM_023476	ENSMUSG00000028776	Tinagl1	1110021J17Rik|AZ-1|AZ1|Arg1|Lcn7|TARP|Tinagl	tubulointerstitial nephritis antigen-like 1	protein-coding	0.035000	0.527363	
mm_35162.1	chr4	14516273	14516473	-	1	NA	NA	NA	105405	NM_145947	208890	Mm.483839	NM_145947	ENSMUSG00000040569	Slc26a7	-	solute carrier family 26, member 7	protein-coding	0.015000	0.402985	
mm_150903.1	chr19	45575051	45575251	+	1	NA	NA	NA	14536	NM_172639	226162	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	5330431N19Rik|Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.035000	0.641791	
mm_72902.1	chr8	90876553	90876753	+	1	NA	NA	NA	47818	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.030000	0.552239	
mm_55943.1	chr6	85125948	85126148	-	1	NA	NA	NA	46	NM_001034902	545861	Mm.321419	NM_001034902	ENSMUSG00000072952	Gm5878	EG545861	predicted gene 5878	protein-coding	0.085000	0.636816	
mm_46833.1	chr5	113280458	113280658	-	1	NA	NA	NA	43	NM_001309528	52850	Mm.200203	NM_172718	ENSMUSG00000042216	Sgsm1	2410098H20Rik|AA408781|D5Bwg1524e|E130107M15|NuIP|Rutbc2	small G protein signaling modulator 1	protein-coding	0.025000	0.542289	
mm_20222.1	chr2	125780475	125780675	-	1	NA	NA	NA	2295	NM_177608	70354	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.035000	0.567164	
mm_41465.1	chr5	91074203	91074403	+	1	NA	NA	NA	-314	NM_007950	13874	Mm.4791	NM_007950	ENSMUSG00000029377	Ereg	EPR	epiregulin	protein-coding	0.025000	0.542289	
mm_126201.1	chr15	78877157	78877357	+	1	NA	NA	NA	67	NM_145929	106039	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	0.100000	0.676617	
mm_171375.1	chr4	119282707	119282907	-	1	NA	NA	NA	11706	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.020000	0.447761	
mm_83724.1	chr9	50775045	50775245	-	1	NA	NA	NA	-80	NM_133981	102580	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	0.030000	0.482587	75(GTCTCTAAAAGG,-,0.00)
mm_16061.1	chr2	167931944	167932144	+	1	NA	NA	NA	-283	NM_011201	19246	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.110000	0.631841	
mm_94228.1	chr11	3289611	3289811	+	1	NA	NA	NA	580	NR_045109	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.080000	0.631841	
mm_49828.1	chr6	37806380	37806580	+	1	NA	NA	NA	-64331	NM_001272064	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.040000	0.577114	
mm_97053.1	chr11	72458063	72458263	+	1	NA	NA	NA	16785	NM_016776	18432	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	0.030000	0.542289	
mm_91461.1	chr10	34096389	34096589	-	1	NA	NA	NA	30	NM_178908	103511	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404	family with sequence similarity 26, member E	protein-coding	0.020000	0.462687	
mm_101895.1	chr11	49096871	49097071	-	1	NA	NA	NA	9954	NM_008330	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.005000	0.323383	
mm_80190.1	chr9	72394042	72394242	+	1	NA	NA	NA	-44387	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.025000	0.517413	
mm_122650.1	chr14	51908557	51908757	-	1	NA	NA	NA	4831	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.010000	0.547264	-88(GGCCATATAGGA,-,0.00)
mm_120039.1	chr14	56402578	56402778	+	1	NA	NA	NA	-19	NM_001033043	30054	Mm.287783	NM_001033043	ENSMUSG00000000365	Rnf17	MMIP-2|Mmip2|TDRD4	ring finger protein 17	protein-coding	0.065000	0.621891	
mm_51533.1	chr6	83188971	83189171	+	1	NA	NA	NA	3125	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.025000	0.636816	
mm_24328.1	chr3	89459100	89459300	+	1	NA	NA	NA	82	NM_026784	68603	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0.055000	0.601990	
mm_158920.1	chr1	58447522	58447722	+	1	NA	NA	NA	-2136	NM_001285827	70225	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding	0.030000	0.512438	
mm_119982.1	chr14	55575729	55575929	+	1	NA	NA	NA	155	NM_026808	68680	Mm.36758	NM_026808	ENSMUSG00000022215	Fitm1	1110028A07Rik|AV010547|Cg10671|Fit1	fat storage-inducing transmembrane protein 1	protein-coding	0.045000	0.587065	
mm_141005.1	chr17	24943141	24943341	-	1	NA	NA	NA	-6264	NM_013931	30957	Mm.43081	NM_013931	ENSMUSG00000024163	Mapk8ip3	BB120594|D17Wsu15e|JIP-3|JSAP1|JSAP1a|JSAP1b|JSAP1c|JSAP1d|Jip3|Syd2|mKIAA1066	mitogen-activated protein kinase 8 interacting protein 3	protein-coding	0.020000	0.532338	
mm_1343.1	chr1	66175178	66175378	+	1	NA	NA	NA	-51	NM_008632	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.145000	0.771144	
mm_24276.1	chr3	89213835	89214035	+	1	NA	NA	NA	400	NM_001161824	17827	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	0.095000	0.701493	
mm_72053.1	chr8	71367493	71367693	+	1	NA	NA	NA	376	NM_025917	67023	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.020000	0.592040	
mm_24400.1	chr3	90357900	90358100	+	1	NA	NA	NA	16346	NM_139304	229542	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	0.035000	0.527363	-55(CCTTTTAGACAT,+,0.00)
mm_78483.1	chr9	32696899	32697099	+	1	NA	NA	NA	957	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.015000	0.477612	
mm_65459.1	chr7	25466270	25466470	-	1	NA	NA	NA	11255	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.015000	0.492537	
mm_26473.1	chr3	144570350	144570550	+	1	NA	NA	NA	23	NM_053102	93684	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.060000	0.512438	78(ATCTCTAAAAGA,-,0.00)
mm_10199.1	chr2	4930651	4930851	+	1	NA	NA	NA	11755	NM_010726	16922	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.015000	0.482587	
mm_80678.1	chr9	90315817	90316017	+	1	NA	NA	NA	-45148	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.025000	0.353234	-22(ATCTTTAAAAGT,-,0.00)
mm_60278.1	chr7	43953849	43954049	+	1	NA	NA	NA	3283	NM_008457	16624	Mm.435488	NM_008457	ENSMUSG00000063089	Klk1b8	Klk8|Nrpn|TADG14|kallikrein|mGK-8	kallikrein 1-related peptidase b8	protein-coding	0.010000	0.522388	
mm_49164.1	chr6	13871440	13871640	+	1	NA	NA	NA	-29	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0.035000	0.547264	
mm_161283.1	chr14	24014600	24014800	-	1	NA	NA	NA	9709	NR_131107	78019	Mm.243845	NR_131107		4930519K11Rik	-	RIKEN cDNA 4930519K11 gene	ncRNA	0.000000	0.452736	
mm_27219.1	chr3	36000532	36000732	-	1	NA	NA	NA	46	NM_023644	72039	Mm.249016	NM_023644	ENSMUSG00000027709	Mccc1	1810045E08Rik|2310058B18Rik|MCCalpha|Mcca|R75106	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	protein-coding	0.075000	0.572139	
mm_65601.1	chr7	27360024	27360224	-	1	NA	NA	NA	-4116	NM_138676	192192	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	0.015000	0.557214	
mm_155727.1	chrX	96160010	96160210	+	1	NA	NA	NA	64065	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.030000	0.537313	
mm_159849.1	chr5	137287487	137287687	+	1	NA	NA	NA	-667	NM_009599	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.030000	0.582090	
mm_100801.1	chr11	4986641	4986841	-	1	NA	NA	NA	-83	NM_001243044	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.030000	0.592040	-37(GCTTTTATGAGA,+,0.00)
mm_72997.1	chr8	93810376	93810576	+	1	NA	NA	NA	-362	NM_010308	14681	Mm.251445	NM_010308	ENSMUSG00000031748	Gnao1	AW050213|Galphao|Gnao|alphaO	guanine nucleotide binding protein, alpha O	protein-coding	0.210000	0.855721	
mm_75581.1	chr8	61515989	61516189	-	1	NA	NA	NA	28355	NM_145595	234309	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.030000	0.497512	
mm_5757.1	chr1	46887993	46888193	-	1	NA	NA	NA	-34584	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.020000	0.442786	-88(CTCCTTTAAAGA,-,0.00),-87(TCCTTTAAAGAC,+,0.00)
mm_48203.1	chr5	137533204	137533404	-	1	NA	NA	NA	-75	NM_010312	14693	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	0.105000	0.681592	
mm_24772.1	chr3	95526784	95526984	+	1	NA	NA	NA	98	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.010000	0.462687	-59(CTTTTTAGAGTC,+,0.00),71(TCATATATGGCC,+,0.00)
mm_84756.1	chr9	75567395	75567595	-	1	NA	NA	NA	-7838	NM_016963	50875	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0.035000	0.547264	
mm_34274.1	chr4	141424205	141424405	+	1	NA	NA	NA	3526	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.015000	0.572139	
mm_24301.1	chr3	89367519	89367719	+	1	NA	NA	NA	-2366	NM_029974	77772	Mm.164013	NM_029974	ENSMUSG00000042672	Dcst1	A330106H01Rik	DC-STAMP domain containing 1	protein-coding	0.030000	0.582090	
mm_55400.1	chr6	60827990	60828190	-	1	NA	NA	NA	914	NM_001042451	20617	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alphaSYN	synuclein, alpha	protein-coding	0.005000	0.487562	78(CCTTTTCTAGAT,+,0.00)
mm_81425.1	chr9	109056846	109057046	+	1	NA	NA	NA	2080	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.015000	0.472637	
mm_25693.1	chr3	122261400	122261600	+	1	NA	NA	NA	-12914	NM_153806	99480	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	0.000000	0.378109	83(GCCTATAAAAAT,-,0.00)
mm_40269.1	chr5	38561810	38562010	+	1	NA	NA	NA	-315	NM_011715	22388	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0.090000	0.631841	
mm_18909.1	chr2	76730360	76730560	-	1	NA	NA	NA	55145	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.020000	0.447761	
mm_63856.1	chr7	135668163	135668363	+	1	NA	NA	NA	-15949	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.020000	0.393035	
mm_143007.1	chr17	56436014	56436214	-	1	NA	NA	NA	-17205	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0.035000	0.562189	
mm_121304.1	chr14	105897320	105897520	+	1	NA	NA	NA	-601	NM_011897	24064	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty homolog 2 (Drosophila)	protein-coding	0.120000	0.681592	
mm_117102.1	chr13	60174892	60175092	-	1	NA	NA	NA	2543	NM_008086	14451	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	0.015000	0.378109	
mm_112034.1	chr12	111537837	111538037	-	1	NA	NA	NA	-164	NM_178041	217869	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.085000	0.661692	
mm_77703.1	chr8	126590895	126591095	-	1	NA	NA	NA	2441	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.005000	0.268657	
mm_44038.1	chr5	147506072	147506272	+	1	NA	NA	NA	75592	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.000000	0.447761	
mm_28777.1	chr3	95977042	95977242	-	1	NA	NA	NA	-8368	NR_045872	668224	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0.015000	0.547264	35(GCATCTTAAAGG,-,0.00)
mm_131652.1	chr16	20537506	20537706	+	1	NA	NA	NA	2126	NM_009679	11773	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.020000	0.527363	
mm_78537.1	chr9	35211195	35211395	+	1	NA	NA	NA	92	NM_026130	67398	Mm.284688	NM_026130	ENSMUSG00000032042	Srpr	1300011P19Rik|D11Mgi27|Srpra	signal recognition particle receptor ('docking protein')	protein-coding	0.130000	0.661692	
mm_38670.1	chr4	144721360	144721560	-	1	NA	NA	NA	-56	NM_001085536	546849	Mm.457885	NM_001085536	ENSMUSG00000041735	Gm13178	Gm437|OTTMUSG00000010750	predicted gene 13178	protein-coding	0.005000	0.517413	
mm_15477.1	chr2	157560677	157560877	+	1	NA	NA	NA	699	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.010000	0.368159	
mm_73305.1	chr8	105170577	105170777	+	1	NA	NA	NA	3	NM_001161458	12400	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0.130000	0.751244	
mm_155948.1	chrX	105079645	105079845	+	1	NA	NA	NA	-11	NM_001281871	67683	Mm.273405	NM_026312	ENSMUSG00000031226	Pbdc1	2610029G23Rik	polysaccharide biosynthesis domain containing 1	protein-coding	0.100000	0.616915	
mm_37689.1	chr4	129231556	129231756	-	1	NA	NA	NA	-3745	NM_001285866	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.010000	0.532338	-34(GACTATTTAAGT,-,0.00)
mm_73083.1	chr8	94480587	94480787	+	1	NA	NA	NA	7924	NM_001033207	434341	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	0.000000	0.338308	
mm_134380.1	chr16	17166834	17167034	-	1	NA	NA	NA	-19705	NM_001306169	76872	Mm.101656	NM_029779	ENSMUSG00000022768	Ccdc116	4930432J16Rik	coiled-coil domain containing 116	protein-coding	0.005000	0.363184	
mm_113060.1	chr13	23738707	23738907	+	1	NA	NA	NA	0	NM_015786	50708	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	0.095000	0.671642	
mm_169329.1	chr14	117546674	117546874	+	1	NA	NA	NA	407073	NR_105747	102465148		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0.050000	0.631841	
mm_106374.1	chr11	118415738	118415938	-	1	NA	NA	NA	-38	NM_001267591	76025	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	0.015000	0.597015	
mm_22444.1	chr2	181693843	181694043	-	1	NA	NA	NA	34	NM_001291207	56470	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0.155000	0.781095	
mm_63138.1	chr7	123124057	123124257	+	1	NA	NA	NA	272	NM_144925	233833	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0.115000	0.741294	
mm_129387.1	chr15	78200579	78200779	-	1	NA	NA	NA	3558	NM_001330686	19293	Mm.2766	NM_013645	ENSMUSG00000005716	Pvalb	PV|Parv|Pva	parvalbumin	protein-coding	0.005000	0.452736	
mm_34934.1	chr4	155839734	155839934	+	1	NA	NA	NA	154	NM_024263	74761	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	0.055000	0.621891	
mm_96312.1	chr11	63158724	63158924	+	1	NA	NA	NA	26021	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.010000	0.427861	
mm_121965.1	chr14	25467659	25467859	-	1	NA	NA	NA	8574	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.010000	0.442786	
mm_8201.1	chr1	138122797	138122997	-	1	NA	NA	NA	52229	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.005000	0.273632	
mm_8401.1	chr1	151500770	151500970	-	1	NA	NA	NA	-47	NM_011277	19821	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0.135000	0.691542	
mm_43390.1	chr5	135733772	135733972	+	1	NA	NA	NA	2017	NR_106001	102466791		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.060000	0.661692	
mm_17469.1	chr2	28559317	28559517	-	1	NA	NA	NA	3986	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.020000	0.532338	
mm_148982.1	chr19	7612469	7612669	+	1	NA	NA	NA	0	NM_025731	66727	Mm.116803	NM_025731	ENSMUSG00000024973	Hrasls5	1700055A14Rik|1700086E08Rik|4921526K24Rik|HRSL5|iNAT	HRAS-like suppressor family, member 5	protein-coding	0.125000	0.751244	
mm_169813.1	chr16	20176970	20177170	-	1	NA	NA	NA	-836	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.080000	0.631841	
mm_167050.1	chr7	83567799	83567999	+	1	NA	NA	NA	-17032	NM_177695	233424	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.050000	0.592040	-32(GAGTATTTAAGC,-,0.00)
mm_46434.1	chr5	104460273	104460473	-	1	NA	NA	NA	916	NM_008861	18764	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	0.080000	0.592040	
mm_154793.1	chrX	13159746	13159946	+	1	NA	NA	NA	76437	NR_045430	72122	Mm.75434	NR_045429	ENSMUSG00000100714	2010308F09Rik	-	RIKEN cDNA 2010308F09 gene	ncRNA	0.015000	0.353234	
mm_5010.1	chr1	192759325	192759525	+	1	NA	NA	NA	11794	NM_144881	226861	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0.005000	0.512438	
mm_159791.1	chr5	109330275	109330475	+	1	NA	NA	NA	-6	NM_001104627	384220	Mm.469880	NM_001104627	ENSMUSG00000092080	Vmn2r16	EG384220	vomeronasal 2, receptor 16	protein-coding	0.000000	0.398010	
mm_8478.1	chr1	153487587	153487787	-	1	NA	NA	NA	-27	NM_007842	13211	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.115000	0.681592	
mm_106053.1	chr11	116110096	116110296	-	1	NA	NA	NA	39	NM_001205081	217333	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.105000	0.731343	
mm_80845.1	chr9	98287377	98287577	+	1	NA	NA	NA	-9106	NM_144533	74080	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	0.005000	0.512438	
mm_75292.1	chr8	41053382	41053582	-	1	NA	NA	NA	1314	NM_001005864	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.005000	0.452736	
mm_161534.1	chr15	102473169	102473369	+	1	NA	NA	NA	2637	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.005000	0.393035	
mm_136028.1	chr16	76373763	76373963	-	1	NA	NA	NA	-814	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.020000	0.567164	
mm_22020.1	chr2	167997581	167997781	-	1	NA	NA	NA	12912	NM_001080708	69553	Mm.68454	NM_001080708	ENSMUSG00000074577	Fam65c	2310033K02Rik|Gm124	family with sequence similarity 65, member C	protein-coding	0.010000	0.542289	
mm_98138.1	chr11	87578327	87578527	+	1	NA	NA	NA	38	NM_001284398	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding	0.080000	0.721393	
mm_58539.1	chr7	4500825	4501025	+	1	NA	NA	NA	755	NM_029834	232807	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.030000	0.517413	-75(CCTTTTCAAGGA,+,0.00)
mm_4063.1	chr1	166125463	166125663	+	1	NA	NA	NA	2335	NM_001033344	240892	Mm.35315	NM_001033344	ENSMUSG00000026564	Dusp27	C130085G02Rik|Gm209	dual specificity phosphatase 27 (putative)	protein-coding	0.015000	0.502488	
mm_128940.1	chr15	74727921	74728121	-	1	NA	NA	NA	5	NM_020519	57277	Mm.27630	NM_020519	ENSMUSG00000022596	Slurp1	1110021N19Rik|AI415082|ARS|ArsB|Slurp-1	secreted Ly6/Plaur domain containing 1	protein-coding	0.015000	0.587065	
mm_31519.1	chr4	54944960	54945160	+	1	NA	NA	NA	-2885	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.085000	0.646766	
mm_69808.1	chr7	141221617	141221817	-	1	NA	NA	NA	-224	NR_029793	387206		NR_029793	ENSMUSG00000065551	Mir210	Mirn210|mir-210|mmu-mir-210	microRNA 210	ncRNA	0.040000	0.577114	
mm_5677.1	chr1	43159089	43159289	-	1	NA	NA	NA	4772	NM_010212	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.010000	0.388060	-49(TCCTTTATAGAA,+,0.00)
mm_106302.1	chr11	118267947	118268147	-	1	NA	NA	NA	-19455	NM_011180	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.005000	0.393035	
mm_119143.1	chr14	31251392	31251592	+	1	NA	NA	NA	3	NM_027088	104416	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	0.140000	0.721393	
mm_162481.1	chr1	134405868	134406068	+	1	NA	NA	NA	-22	NM_028057	72017	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	0.085000	0.686567	
mm_645.1	chr1	40421962	40422162	+	1	NA	NA	NA	-7508	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.005000	0.363184	-100(CCTTTTAAAATA,+,0.00)
mm_114416.1	chr13	64366950	64367150	+	1	NA	NA	NA	3470	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.035000	0.502488	
mm_36809.1	chr4	103214705	103214905	-	1	NA	NA	NA	79	NM_177732	242585	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.110000	0.666667	
mm_156563.1	chrX	151803558	151803758	+	1	NA	NA	NA	376	NM_021523	59026	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	0.100000	0.636816	
mm_69873.1	chr7	141476157	141476357	-	1	NA	NA	NA	-123	NM_001252588	64540	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.035000	0.621891	
mm_11647.1	chr2	34961309	34961509	+	1	NA	NA	NA	363	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.035000	0.597015	
mm_42521.1	chr5	115559412	115559612	+	1	NA	NA	NA	45	NM_007475	11837	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.105000	0.641791	-31(TCCTATAAAAGG,-,0.00)
mm_31629.1	chr4	59287286	59287486	+	1	NA	NA	NA	27335	NR_105031	101055769	Mm.421401	NR_105031		Gm12596	OTTMUSG00000007649	predicted gene 12596	ncRNA	0.000000	0.447761	-34(GCATATATAAAG,-,0.00),-13(GGCCTTAAAGGA,-,0.00)
mm_27342.1	chr3	50414677	50414877	-	1	NA	NA	NA	28836	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.268657	
mm_84965.1	chr9	83806151	83806351	-	1	NA	NA	NA	54	NM_148941	83603	Mm.83949	NM_148941	ENSMUSG00000032262	Elovl4	-	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	protein-coding	0.130000	0.746269	
mm_53747.1	chr6	145211135	145211335	+	1	NA	NA	NA	88	NM_133688	67636	Mm.486359	NM_133688	ENSMUSG00000040370	Lyrm5	4930469P12Rik|AL022899|Etfrf1|Ghiso	LYR motif containing 5	protein-coding	0.085000	0.641791	
mm_90264.1	chr10	122678641	122678841	+	1	NA	NA	NA	-21	NM_176919	319468	Mm.489703	NM_176919	ENSMUSG00000034613	Ppm1h	A430075L18Rik|ARHCL1|C030002B11Rik	protein phosphatase 1H (PP2C domain containing)	protein-coding	0.100000	0.716418	
mm_162246.1	chrX	159445953	159446153	+	1	NA	NA	NA	-13072	NM_001313752	78283	Mm.160079	NM_001081124	ENSMUSG00000041020	Map7d2	1600028E09Rik|2900002G04Rik|5330432J06Rik|C030036K04Rik|Mtap7d2	MAP7 domain containing 2	protein-coding	0.025000	0.522388	
mm_17945.1	chr2	36136170	36136370	-	1	NA	NA	NA	-128	NM_026422	67871	Mm.378232	NM_026422	ENSMUSG00000026887	Mrrf	2400002D02Rik|MRFF|MTRRF|RRF	mitochondrial ribosome recycling factor	protein-coding	0.045000	0.517413	
mm_25547.1	chr3	115888070	115888270	+	1	NA	NA	NA	-13	NM_027193	69740	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	0.060000	0.557214	
mm_111546.1	chr12	100908105	100908305	-	1	NA	NA	NA	-7	NM_001177673	238377	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.085000	0.701493	
mm_59018.1	chr7	19266204	19266404	+	1	NA	NA	NA	5550	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.015000	0.567164	
mm_127135.1	chr15	98167865	98168065	+	1	NA	NA	NA	159	NM_177716	239650	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	0.085000	0.681592	
mm_68321.1	chr7	106502817	106503017	-	1	NA	NA	NA	-61844	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.343284	5(CACCATAAAAAG,-,0.00),7(CCATAAAAAGAC,+,0.00)
mm_52061.1	chr6	97312022	97312222	+	1	NA	NA	NA	-59342	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.030000	0.517413	
mm_94180.1	chr10	128919182	128919382	-	1	NA	NA	NA	15	NM_134006	19682	Mm.439856	NM_134006	ENSMUSG00000025350	Rdh5	9-cis|AI987873|RDH4|cRDH	retinol dehydrogenase 5	protein-coding	0.015000	0.547264	
mm_95993.1	chr11	59202405	59202605	+	1	NA	NA	NA	19	NM_001302336	67212	Mm.282694	NM_026035	ENSMUSG00000036860	Mrpl55	2810038N09Rik|L55mt|MRP-L55	mitochondrial ribosomal protein L55	protein-coding	0.090000	0.656716	-53(CGCCCTTAATGG,-,0.00),-51(CCCTTAATGGGG,+,0.00)
mm_157894.1	chrX	76664512	76664712	-	1	NA	NA	NA	-61688	NM_001201395	74987	Mm.107996	NM_001201395	ENSMUSG00000079525	Cldn34d	4930468A15Rik	claudin 34D	protein-coding	0.000000	0.442786	
mm_77605.1	chr8	123893116	123893316	-	1	NA	NA	NA	1559	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.050000	0.597015	
mm_34237.1	chr4	141150380	141150580	+	1	NA	NA	NA	2558	NM_172518	213499	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0.000000	0.398010	
mm_69583.1	chr7	135704341	135704541	-	1	NA	NA	NA	11938	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.020000	0.412935	
mm_171773.1	chr5	109546904	109547104	-	1	NA	NA	NA	11989	NM_016715	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.015000	0.467662	
mm_22201.1	chr2	173578076	173578276	-	1	NA	NA	NA	165	NM_001199955	70065	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	0.090000	0.686567	
mm_49130.1	chr6	8594184	8594384	+	1	NA	NA	NA	74226	NM_001286729	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.010000	0.313433	
mm_44713.1	chr5	30945447	30945647	-	1	NA	NA	NA	-67	NM_026770	68567	Mm.45127	NM_026770	ENSMUSG00000029161	Cgref1	1110004G24Rik|AW045201|Cgr11	cell growth regulator with EF hand domain 1	protein-coding	0.080000	0.706468	
mm_139373.1	chr17	51832689	51832889	+	1	NA	NA	NA	-142	NM_009122	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.175000	0.840796	
mm_156273.1	chrX	136835020	136835220	+	1	NA	NA	NA	12374	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.015000	0.417910	
mm_108381.1	chr12	80877380	80877580	+	1	NA	NA	NA	46967	NR_033786	67340	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.010000	0.626866	
mm_102354.1	chr11	58214687	58214887	-	1	NA	NA	NA	-190	NM_019440	54396	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	0.030000	0.597015	
mm_75496.1	chr8	50916116	50916316	-	1	NA	NA	NA	548104	NR_046067	100039954	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.085000	0.587065	
mm_41437.1	chr5	90904099	90904299	+	1	NA	NA	NA	300	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.020000	0.592040	
mm_69466.1	chr7	133702374	133702574	-	1	NA	NA	NA	26	NM_001302087	22276	Mm.3160	NM_009479	ENSMUSG00000030979	Uros	AI415298|UROIIIS|Uros3	uroporphyrinogen III synthase	protein-coding	0.030000	0.497512	
mm_61148.1	chr7	57734262	57734462	+	1	NA	NA	NA	143189	NM_008071	14402	Mm.8004	NM_008071	ENSMUSG00000033676	Gabrb3	A230092K12Rik|AW049585|Cp1|Gabrb-3|beta3	gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	protein-coding	0.000000	0.363184	
mm_67947.1	chr7	100467131	100467331	-	1	NA	NA	NA	-5760	NM_009464	22229	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.020000	0.497512	-63(GACTTTAAAGGG,-,0.00),-62(ACTTTAAAGGGG,+,0.00)
mm_154954.1	chrX	36743612	36743812	+	1	NA	NA	NA	80	NR_075096	194744	Mm.336014	NM_001085497	ENSMUSG00000037636	Slc25a43	Gm8	solute carrier family 25, member 43	protein-coding	0.085000	0.721393	
mm_55611.1	chr6	72042425	72042625	-	1	NA	NA	NA	3	NR_046180	330350	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0.015000	0.487562	
mm_120674.1	chr14	70554451	70554651	+	1	NA	NA	NA	495	NM_021877	15460	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	0.100000	0.696517	
mm_32052.1	chr4	97630218	97630418	+	1	NA	NA	NA	-45727	NR_015513	319865	Mm.373807	NM_177023		E130114P18Rik	-	RIKEN cDNA E130114P18 gene	ncRNA	0.010000	0.477612	
mm_144270.1	chr18	11058948	11059148	+	1	NA	NA	NA	-6481	NR_105023	68434	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0.070000	0.636816	
mm_11375.1	chr2	31140183	31140383	+	1	NA	NA	NA	1725	NM_001177649	14269	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.015000	0.487562	
mm_75202.1	chr8	39604460	39604660	-	1	NA	NA	NA	38118	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.333333	
mm_66223.1	chr7	34812585	34812785	-	1	NA	NA	NA	26	NM_175140	68947	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	0.140000	0.756219	
mm_46705.1	chr5	110285919	110286119	-	1	NA	NA	NA	149	NM_008993	19301	Mm.21853	NM_008993	ENSMUSG00000029499	Pxmp2	22kDa|PMP22	peroxisomal membrane protein 2	protein-coding	0.100000	0.686567	
mm_156806.1	chrX	163911332	163911532	+	1	NA	NA	NA	2415	NM_001290379	108012	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	0.020000	0.383085	65(GTTTATAAAAGG,-,0.00)
mm_90585.1	chr10	128269107	128269307	+	1	NA	NA	NA	1210	NM_133997	103161	Mm.26513	NM_133997	ENSMUSG00000047631	Apof	AI255964	apolipoprotein F	protein-coding	0.010000	0.587065	
mm_122550.1	chr14	48667378	48667578	-	1	NA	NA	NA	166	NM_001286482	18424	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	0.035000	0.472637	
mm_5595.1	chr1	39558271	39558471	-	1	NA	NA	NA	-9531	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.015000	0.323383	-100(TCCTTTATAAGA,-,0.00)
mm_25257.1	chr3	104780988	104781188	+	1	NA	NA	NA	32	NM_027982	71887	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	0.075000	0.686567	
mm_127009.1	chr15	95830034	95830234	+	1	NA	NA	NA	39291	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.035000	0.537313	
mm_135715.1	chr16	55811850	55812050	-	1	NA	NA	NA	10188	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.025000	0.417910	
mm_13490.1	chr2	106693372	106693572	+	1	NA	NA	NA	13	NM_001143683	77015	Mm.45628	NM_029837	ENSMUSG00000016386	Mpped2	239Fb|2700082O15Rik|AV354767|AW060960	metallophosphoesterase domain containing 2	protein-coding	0.095000	0.711443	
mm_75579.1	chr8	61450422	61450622	-	1	NA	NA	NA	-37212	NM_145595	234309	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.020000	0.527363	
mm_38314.1	chr4	137166732	137166932	-	1	NA	NA	NA	-1766	NR_040443	100503595	Mm.421314	NR_040443	ENSMUSG00000085833	Gm13003	OTTMUSG00000009822	predicted gene 13003	ncRNA	0.010000	0.517413	
mm_120968.1	chr14	77904797	77904997	+	1	NA	NA	NA	658	NM_029495	108670	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.005000	0.398010	
mm_121596.1	chr14	7994104	7994304	-	1	NA	NA	NA	-22	NM_007870	13421	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.015000	0.497512	-29(TGGCTTTTAAGG,-,0.00),-28(GGCTTTTAAGGA,-,0.00),-27(GCTTTTAAGGAG,+,0.00)
mm_51604.1	chr6	84019249	84019449	+	1	NA	NA	NA	-37	NM_001310152	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.050000	0.611940	
mm_68543.1	chr7	114117643	114117843	-	1	NA	NA	NA	38	NM_025846	66922	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.105000	0.711443	
mm_82437.1	chr9	15279264	15279464	-	1	NA	NA	NA	503	NM_144933	234959	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0.025000	0.407960	
mm_57030.1	chr6	122294381	122294581	-	1	NA	NA	NA	-11648	NM_016970	50928	Mm.20434	NM_016970	ENSMUSG00000030114	Klrg1	2F1-Ag|MAFA|MAFA-L	killer cell lectin-like receptor subfamily G, member 1	protein-coding	0.000000	0.472637	
mm_25129.1	chr3	102167748	102167948	+	1	NA	NA	NA	36845	NM_177545	229658	Mm.118004	NM_177545	ENSMUSG00000027860	Vangl1	Kitenin|Lpp2|Stb2|Stbm	vang-like 1 (van gogh, Drosophila)	protein-coding	0.010000	0.517413	
mm_113133.1	chr13	24616762	24616962	+	1	NA	NA	NA	2256	NM_178658	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.030000	0.432836	
mm_165446.1	chr2	155826340	155826540	-	1	NA	NA	NA	485	NM_010579	16418	Mm.271674	NM_010579	ENSMUSG00000027613	Eif6	1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding	0.075000	0.641791	
mm_107930.1	chr12	71137134	71137334	+	1	NA	NA	NA	386	NM_001163378	76967	Mm.87290	NM_029818	ENSMUSG00000034601	2700049A03Rik	Ta3|Talpid3|mKIAA0586	RIKEN cDNA 2700049A03 gene	protein-coding	0.085000	0.547264	
mm_71186.1	chr8	40863076	40863276	+	1	NA	NA	NA	809	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.025000	0.407960	-31(CTTTTAATACCG,+,0.00)
mm_64589.1	chr7	3168971	3169171	-	1	NA	NA	NA	132	NM_001004153	245128	Mm.268551	NM_001004153	ENSMUSG00000054753	AU018091	-	expressed sequence AU018091	protein-coding	0.015000	0.512438	
mm_114024.1	chr13	52633232	52633432	+	1	NA	NA	NA	36450	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.000000	0.368159	
mm_16595.1	chr2	4938294	4938494	-	1	NA	NA	NA	19398	NM_010726	16922	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.020000	0.427861	
mm_126145.1	chr15	78349007	78349207	+	1	NA	NA	NA	508	NR_106138	102466845		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0.005000	0.537313	
mm_112179.1	chr12	113421939	113422139	-	1	NA	NA	NA	-67526	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.025000	0.527363	
mm_118248.1	chr13	111983955	111984155	-	1	NA	NA	NA	116119	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.020000	0.437811	-33(GCCTTTATAAAC,+,0.00),-33(GCCTTTATAAAC,-,0.00)
mm_155988.1	chrX	106143173	106143373	+	1	NA	NA	NA	-2	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.005000	0.368159	
mm_38473.1	chr4	140665761	140665961	-	1	NA	NA	NA	26	NM_001290803	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.030000	0.626866	
mm_92476.1	chr10	78185029	78185229	-	1	NA	NA	NA	20	NM_029546	110816	Mm.103522	NM_029546	ENSMUSG00000032834	Pwp2	6530411D08Rik|Pwp2h|wdp103	PWP2 periodic tryptophan protein homolog (yeast)	protein-coding	0.095000	0.641791	
mm_136050.1	chr16	78576534	78576734	-	1	NA	NA	NA	54	NM_001252438	67102	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.155000	0.741294	
mm_93127.1	chr10	91188976	91189176	-	1	NA	NA	NA	-17457	NM_001080130	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.015000	0.492537	-66(CCCTTTAAACTG,+,0.00)
mm_56889.1	chr6	119036889	119037089	-	1	NA	NA	NA	71506	NM_001159534	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.005000	0.512438	
mm_152081.1	chr19	6858099	6858299	-	1	NA	NA	NA	12	NM_001081291	78317	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.025000	0.631841	
mm_108784.1	chr12	90430367	90430567	+	1	NA	NA	NA	308570	NM_010050	13371	Mm.21389	NM_010050	ENSMUSG00000007682	Dio2	5DII|AI324267|DIOII	deiodinase, iodothyronine, type II	protein-coding	0.000000	0.432836	
mm_150729.1	chr19	43689733	43689933	+	1	NA	NA	NA	144	NM_053103	93685	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	0.090000	0.711443	
mm_22014.1	chr2	167777827	167778027	-	1	NA	NA	NA	86750	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.035000	0.606965	
mm_117384.1	chr13	73346821	73347021	-	1	NA	NA	NA	463	NR_045293	432777	Mm.415319	NR_045293		D630045M09Rik	AU019512	RIKEN cDNA D630045M09 gene	ncRNA	0.010000	0.557214	
mm_40307.1	chr5	43818814	43819014	+	1	NA	NA	NA	21	NM_009763	12182	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	0.020000	0.582090	
mm_93305.1	chr10	97643952	97644152	-	1	NA	NA	NA	-16	NM_007884	13516	Mm.148886	NM_007884	ENSMUSG00000019936	Epyc	Dspg3|PG-Lb|SLRR3B	epiphycan	protein-coding	0.000000	0.457711	
mm_168804.1	chr12	20614906	20615106	+	1	NA	NA	NA	200773	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.120000	0.746269	
mm_28120.1	chr3	86920277	86920477	-	1	NA	NA	NA	507	NM_001195496	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.125000	0.746269	
mm_101677.1	chr11	39794177	39794377	-	1	NA	NA	NA	-404052	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA	0.035000	0.542289	
mm_74939.1	chr8	25812887	25813087	-	1	NA	NA	NA	4513	NM_011485	20845	Mm.293314	NM_011485	ENSMUSG00000031574	Star	AV363654|D8Ertd419e|stARD1	steroidogenic acute regulatory protein	protein-coding	0.005000	0.477612	
mm_17471.1	chr2	28559577	28559777	-	1	NA	NA	NA	3726	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.005000	0.587065	
mm_122892.1	chr14	54949426	54949626	-	1	NA	NA	NA	-384	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.025000	0.532338	
mm_76193.1	chr8	82402924	82403124	-	1	NA	NA	NA	-438	NM_008357	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.015000	0.611940	
mm_68342.1	chr7	106506324	106506524	-	1	NA	NA	NA	-65351	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.373134	
mm_160049.1	chr6	148946339	148946539	-	1	NA	NA	NA	-7	NM_019643	56306	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Tera	family with sequence similarity 60, member A	protein-coding	0.105000	0.636816	
mm_84457.1	chr9	66575938	66576138	-	1	NA	NA	NA	17077	NM_144937	235441	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.005000	0.407960	
mm_41817.1	chr5	103814892	103815092	+	1	NA	NA	NA	60419	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.035000	0.487562	
mm_26230.1	chr3	139205571	139205771	+	1	NA	NA	NA	-222	NM_198659	381476	Mm.188334	NM_198659	ENSMUSG00000047940	Stpg2	B930007M17Rik|Gm1017	sperm tail PG rich repeat containing 2	protein-coding	0.085000	0.676617	
mm_130094.1	chr15	89425212	89425412	-	1	NA	NA	NA	550	NM_009948	12895	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	0.040000	0.616915	
mm_168177.1	chr10	56497358	56497558	+	1	NA	NA	NA	120158	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.015000	0.412935	
mm_70206.1	chr7	144751888	144752088	-	1	NA	NA	NA	-13396	NM_001242349	101772	Mm.26700	NM_178642	ENSMUSG00000031075	Ano1	Tmem16a	anoctamin 1, calcium activated chloride channel	protein-coding	0.030000	0.601990	
mm_25940.1	chr3	131476142	131476342	+	1	NA	NA	NA	-88526	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.035000	0.577114	-61(CTGTTTATAAGC,-,0.00)
mm_85605.1	chr9	107594373	107594573	-	1	NA	NA	NA	6755	NM_025903	15983	Mm.215335	NM_025903	ENSMUSG00000010048	Ifrd2	1810034A24Rik|AA470234|AI838527|SKMc15	interferon-related developmental regulator 2	protein-coding	0.020000	0.522388	
mm_84329.1	chr9	64021852	64022052	-	1	NA	NA	NA	107	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.080000	0.651741	
mm_87362.1	chr10	43901714	43901914	+	1	NA	NA	NA	7	NM_130892	170728	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	0.110000	0.626866	
mm_77131.1	chr8	111338351	111338551	-	1	NA	NA	NA	-246	NM_029005	74568	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0.015000	0.417910	
mm_91215.1	chr10	21844532	21844732	-	1	NA	NA	NA	-37552	NM_001161845	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.020000	0.482587	-31(GGCTTTTAAAAG,-,0.00),-30(GCTTTTAAAAGG,+,0.00),-30(GCTTTTAAAAGG,-,0.00),-29(CTTTTAAAAGGG,+,0.00)
mm_79013.1	chr9	45742479	45742679	+	1	NA	NA	NA	86059	NM_001081373	214552	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	0.040000	0.582090	
mm_84120.1	chr9	58555102	58555302	-	1	NA	NA	NA	-14262	NM_133983	102657	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.085000	0.756219	
mm_2055.1	chr1	87442914	87443114	+	1	NA	NA	NA	-27250	NM_028473	73234	Mm.7310	NM_028473	ENSMUSG00000026258	3110079O15Rik	Snorc	RIKEN cDNA 3110079O15 gene	protein-coding	0.000000	0.378109	
mm_6719.1	chr1	82478070	82478270	-	1	NA	NA	NA	108679	NM_007735	12829	Mm.40253	NM_007735	ENSMUSG00000067158	Col4a4	E130010M05Rik|[a]4(IV)	collagen, type IV, alpha 4	protein-coding	0.015000	0.457711	
mm_34178.1	chr4	140699870	140700070	+	1	NA	NA	NA	-1503	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.045000	0.497512	88(GTCTATTAAGAG,-,0.00)
mm_42949.1	chr5	123014964	123015164	+	1	NA	NA	NA	-10	NM_175423	109305	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.140000	0.696517	
mm_59340.1	chr7	25471884	25472084	+	1	NA	NA	NA	5641	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.005000	0.487562	
mm_160790.1	chr10	129723502	129723702	-	1	NA	NA	NA	-60	NM_146555	258548	Mm.391456	NM_146555	ENSMUSG00000096858	Olfr805	MOR110-4	olfactory receptor 805	protein-coding	0.000000	0.278607	
mm_84935.1	chr9	82938044	82938244	-	1	NA	NA	NA	37345	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.010000	0.283582	
mm_107405.1	chr12	33394763	33394963	+	1	NA	NA	NA	9	NM_029152	75040	Mm.156068	NM_029152	ENSMUSG00000020562	Efcab10	4930504H06Rik	EF-hand calcium binding domain 10	protein-coding	0.015000	0.502488	
mm_172056.1	chr6	128974825	128975025	-	1	NA	NA	NA	-30	NR_106107	102465757		NR_106107	ENSMUSG00000098359	Mir7649	mmu-mir-7649	microRNA 7649	ncRNA	0.000000	0.447761	
mm_125641.1	chr15	62169865	62170065	+	1	NA	NA	NA	49486	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.015000	0.462687	
mm_164609.1	chr17	31143163	31143363	-	1	NA	NA	NA	1019	NM_009363	21785	Mm.1825	NM_009363	ENSMUSG00000024028	Tff2	SP|mSP	trefoil factor 2 (spasmolytic protein 1)	protein-coding	0.015000	0.557214	
mm_496.1	chr1	36903894	36904094	+	1	NA	NA	NA	35533	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.025000	0.502488	
mm_69123.1	chr7	127026319	127026519	-	1	NA	NA	NA	60	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.105000	0.796020	
mm_33634.1	chr4	132959579	132959779	+	1	NA	NA	NA	-14416	NM_010208	14191	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.010000	0.467662	
mm_146540.1	chr18	5593705	5593905	-	1	NA	NA	NA	-1368	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	0.035000	0.457711	
mm_97619.1	chr11	78955306	78955506	+	1	NA	NA	NA	29518	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.020000	0.572139	
mm_72225.1	chr8	72741704	72741904	+	1	NA	NA	NA	18534	NM_009188	20467	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0.030000	0.512438	
mm_36637.1	chr4	93335429	93335629	-	1	NA	NA	NA	-18	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.130000	0.776119	
mm_168613.1	chr11	76862396	76862596	-	1	NA	NA	NA	-15488	NM_007754	12874	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0.020000	0.472637	
mm_143786.1	chr17	81731180	81731380	-	1	NA	NA	NA	7107	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.383085	
mm_42520.1	chr5	115559394	115559594	+	1	NA	NA	NA	27	NM_007475	11837	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.095000	0.606965	-13(TCCTATAAAAGG,-,0.00)
mm_59571.1	chr7	28104677	28104877	+	1	NA	NA	NA	-24689	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.050000	0.557214	
mm_36972.1	chr4	109476389	109476589	-	1	NA	NA	NA	16	NM_013876	29864	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0.120000	0.796020	
mm_1126.1	chr1	60181486	60181686	+	1	NA	NA	NA	987	NM_173444	269198	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	0.015000	0.323383	75(GTCTTTTTGAGG,-,0.00)
mm_98959.1	chr11	98551076	98551276	+	1	NA	NA	NA	79	NM_001166494	69376	Mm.55996	NM_027061	ENSMUSG00000017195	Zpbp2	1700017D11Rik|2610022C02Rik|ZPBPL	zona pellucida binding protein 2	protein-coding	0.090000	0.686567	
mm_159898.1	chr6	38196950	38197150	-	1	NA	NA	NA	56959	NM_194061	330286	Mm.277163	NM_194061	ENSMUSG00000063455	D630045J12Rik	Kiaa1549|mKIAA1549	RIKEN cDNA D630045J12 gene	protein-coding	0.010000	0.527363	
mm_103566.1	chr11	77882113	77882313	-	1	NA	NA	NA	11659	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding	0.025000	0.517413	
mm_100897.1	chr11	6066260	6066460	-	1	NA	NA	NA	-612	NM_007595	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	0.025000	0.542289	
mm_130884.1	chr15	102257238	102257438	-	1	NA	NA	NA	184	NM_011244	19411	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.100000	0.696517	
mm_6943.1	chr1	85727393	85727593	-	1	NA	NA	NA	9113	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.000000	0.402985	77(ACTTTTATAGCT,+,0.00)
mm_101034.1	chr11	8600633	8600833	-	1	NA	NA	NA	63802	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.005000	0.502488	
mm_36777.1	chr4	102921687	102921887	-	1	NA	NA	NA	-64592	NM_001163767	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.000000	0.447761	
mm_56573.1	chr6	106747916	106748116	-	1	NA	NA	NA	1021	NM_008370	16192	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	0.000000	0.487562	
mm_22111.1	chr2	170131944	170132144	-	1	NA	NA	NA	-824	NM_001033299	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.020000	0.427861	32(TCTTTAATACGA,+,0.00)
mm_14335.1	chr2	129592752	129592952	+	1	NA	NA	NA	13	NM_001291020	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.050000	0.666667	87(CACCTTAAGAGG,-,0.00)
mm_36336.1	chr4	72198947	72199147	-	1	NA	NA	NA	1846	NM_011599	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.045000	0.492537	
mm_32860.1	chr4	118409253	118409453	+	1	NA	NA	NA	16	NM_020000	80509	Mm.259567	NM_020000	ENSMUSG00000006392	Med8	2210021A15Rik|AB041805|ARC32	mediator complex subunit 8	protein-coding	0.080000	0.611940	
mm_105159.1	chr11	101551765	101551965	-	1	NA	NA	NA	90	NM_009764	12189	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	0.095000	0.582090	
mm_128185.1	chr15	34678740	34678940	-	1	NA	NA	NA	-134	NM_145469	223473	Mm.258402	NM_145469	ENSMUSG00000038879	Nipal2	9330161F08Rik|Npal2	NIPA-like domain containing 2	protein-coding	0.075000	0.656716	
mm_61457.1	chr7	75596208	75596408	+	1	NA	NA	NA	140774	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.020000	0.457711	
mm_65960.1	chr7	30435060	30435260	-	1	NA	NA	NA	10422	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.015000	0.497512	
mm_107619.1	chr12	51348288	51348488	+	1	NA	NA	NA	158	NM_001015099	217558	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding	0.130000	0.686567	
mm_172739.1	chr8	7856327	7856527	-	1	NA	NA	NA	804346	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.045000	0.482587	
mm_92796.1	chr10	81350237	81350437	-	1	NA	NA	NA	89	NM_001163165	15353	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0.120000	0.726368	
mm_123400.1	chr14	63437975	63438175	-	1	NA	NA	NA	1681	NM_177628	219148	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.025000	0.522388	
mm_44272.1	chr5	5694342	5694542	-	1	NA	NA	NA	-116	NM_001285469	74051	Mm.274956	NM_028734	ENSMUSG00000015653	Steap2	4921538B17Rik|AI930049|AW045895|IPCA-1|IPCA1|PCANAP1|STAMP1|STMP	six transmembrane epithelial antigen of prostate 2	protein-coding	0.030000	0.527363	
mm_49699.1	chr6	34179136	34179336	+	1	NA	NA	NA	-2182	NM_021435	58246	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0.005000	0.482587	
mm_21740.1	chr2	164777982	164778182	-	1	NA	NA	NA	1652	NM_009394	21925	Mm.1716	NM_009394	ENSMUSG00000017300	Tnnc2	Tncs	troponin C2, fast	protein-coding	0.040000	0.562189	
mm_128288.1	chr15	37135660	37135860	-	1	NA	NA	NA	-97276	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	0.060000	0.592040	
mm_92865.1	chr10	81622149	81622349	-	1	NA	NA	NA	5073	NM_001163430	50721	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0.005000	0.447761	
mm_50216.1	chr6	42286614	42286814	+	1	NA	NA	NA	29	NM_013491	12723	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	0.015000	0.597015	-82(AGCTATAAATAG,-,0.00)
mm_61986.1	chr7	91090640	91090840	+	1	NA	NA	NA	-46	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.010000	0.457711	55(CTATATATAGCC,+,0.00)
mm_110785.1	chr12	71136556	71136756	-	1	NA	NA	NA	19	NM_001024853	30056	Mm.207767	NM_013896	ENSMUSG00000021079	Timm9	2810011L15Rik|Tim10a|Timm10	translocase of inner mitochondrial membrane 9	protein-coding	0.080000	0.592040	
mm_25368.1	chr3	107101565	107101765	+	1	NA	NA	NA	98	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.140000	0.761194	
mm_77590.1	chr8	123891750	123891950	-	1	NA	NA	NA	2925	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.045000	0.487562	
mm_72470.1	chr8	83389759	83389959	+	1	NA	NA	NA	17	NM_001329680	12745	Mm.358581	NM_009904	ENSMUSG00000002190	Clgn	4930459O04Rik|A2/6|AI528775|Cln	calmegin	protein-coding	0.140000	0.746269	
mm_90504.1	chr10	128036129	128036329	+	1	NA	NA	NA	883	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.070000	0.597015	
mm_56130.1	chr6	87672030	87672230	-	1	NA	NA	NA	38	NM_024251	72103	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding	0.030000	0.527363	-32(CAGTTTTTAAGC,-,0.00)
mm_11497.1	chr2	32524925	32525125	+	1	NA	NA	NA	-10334	NM_153560	98952	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.025000	0.532338	
mm_8081.1	chr1	135585674	135585874	-	1	NA	NA	NA	-419	NM_173437	215690	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.055000	0.671642	
mm_40257.1	chr5	38230468	38230668	+	1	NA	NA	NA	10086	NM_025281	17089	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	0.010000	0.457711	
mm_99346.1	chr11	101553716	101553916	+	1	NA	NA	NA	1162	NM_001252223	17966	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	0.015000	0.432836	
mm_93563.1	chr10	116522001	116522201	-	1	NA	NA	NA	-48578	NM_021452	58802	Mm.440652	NM_021452	ENSMUSG00000054934	Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding	0.005000	0.303483	-7(TTTTTTAAAGCA,+,0.00)
mm_111051.1	chr12	80109638	80109838	-	1	NA	NA	NA	3275	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.025000	0.621891	
mm_160708.1	chr10	58232653	58232853	-	1	NA	NA	NA	-78	NM_001081954	664783	Mm.482575	NM_001081954		Dux	AW822073|Dux4|Duxbl|EG664783	double homeobox	protein-coding	0.020000	0.582090	-46(AGGTATTTAAGG,-,0.00)
mm_99645.1	chr11	105304287	105304487	+	1	NA	NA	NA	11741	NM_008626	17534	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0.005000	0.462687	
mm_145040.1	chr18	39496656	39496856	+	1	NA	NA	NA	-9511	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.015000	0.432836	
mm_105938.1	chr11	115187204	115187404	-	1	NA	NA	NA	12	NM_025400	66176	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	0.085000	0.621891	
mm_124608.1	chr15	3279268	3279468	+	1	NA	NA	NA	8391	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.015000	0.587065	
mm_119626.1	chr14	51145242	51145442	+	1	NA	NA	NA	1425	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.005000	0.467662	
mm_136142.1	chr16	87440482	87440682	-	1	NA	NA	NA	10	NM_016924	53858	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	0.095000	0.631841	
mm_119151.1	chr14	31495039	31495239	+	1	NA	NA	NA	60	NM_028932	74427	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	0.135000	0.711443	
mm_37741.1	chr4	129595011	129595211	-	1	NA	NA	NA	5537	NM_018799	54709	Mm.250874	NM_018799	ENSMUSG00000028798	Eif3i	36kDa|D4Ertd632e|Eif3s2|Trip1	eukaryotic translation initiation factor 3, subunit I	protein-coding	0.060000	0.606965	
mm_20162.1	chr2	122150893	122151093	-	1	NA	NA	NA	3306	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.030000	0.467662	
mm_80438.1	chr9	77941139	77941339	+	1	NA	NA	NA	23874	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.030000	0.487562	
mm_117817.1	chr13	98013280	98013480	-	1	NA	NA	NA	192785	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0.005000	0.447761	-7(TTTTTTATAGAC,+,0.00)
mm_114817.1	chr13	91624201	91624401	+	1	NA	NA	NA	-117220	NM_028790	74156	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0.000000	0.278607	
mm_64383.1	chr7	142474896	142475096	+	1	NA	NA	NA	-2017	NM_001271523	16985	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.050000	0.731343	
mm_99512.1	chr11	103102983	103103183	+	1	NA	NA	NA	1395	NM_025988	67131	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	0.035000	0.582090	-95(GGGTATAAAAGA,-,0.00)
mm_76798.1	chr8	103347439	103347639	-	1	NA	NA	NA	-5	NR_036588	69794	Mm.396139	NR_036588	ENSMUSG00000110340	1600027J07Rik	-	RIKEN cDNA 1600027J07 gene	ncRNA	0.015000	0.507463	
mm_18666.1	chr2	70825329	70825529	-	1	NA	NA	NA	51	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.160000	0.810945	
mm_63266.1	chr7	126759596	126759796	+	1	NA	NA	NA	70	NM_011952	26417	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.110000	0.776119	
mm_137002.1	chr17	17491391	17491591	+	1	NA	NA	NA	88805	NM_025681	66643	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.030000	0.542289	
mm_5259.1	chr1	16688050	16688250	-	1	NA	NA	NA	-306	NM_001159711	17087	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0.015000	0.472637	
mm_82769.1	chr9	26922994	26923194	-	1	NA	NA	NA	-13	NM_001281475	382064	Mm.335028	NM_001177509	ENSMUSG00000079644	Gm1110	-	predicted gene 1110	protein-coding	0.040000	0.572139	
mm_163051.1	chr11	58420984	58421184	+	1	NA	NA	NA	-27	NM_027239	69864	Mm.45641	NM_027239	ENSMUSG00000013653	1810065E05Rik	AV047390	RIKEN cDNA 1810065E05 gene	protein-coding	0.005000	0.472637	-7(GGCTATAAAAGT,-,0.00)
mm_135931.1	chr16	73958263	73958463	-	1	NA	NA	NA	383704	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.010000	0.472637	
mm_70246.1	chr8	3392906	3393106	+	1	NA	NA	NA	-2	NM_133962	102098	Mm.170461	NM_133962	ENSMUSG00000004568	Arhgef18	AI467246|D030053O22Rik	rho/rac guanine nucleotide exchange factor (GEF) 18	protein-coding	0.085000	0.701493	
mm_112327.1	chr12	115604322	115604522	-	1	NA	NA	NA	91372	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.005000	0.432836	
mm_92541.1	chr10	79645656	79645856	-	1	NA	NA	NA	-18	NM_001033473	382384	Mm.244510	NM_001033473	ENSMUSG00000035963	Odf3l2	Gm1157	outer dense fiber of sperm tails 3-like 2	protein-coding	0.015000	0.616915	
mm_110972.1	chr12	76961977	76962177	-	1	NA	NA	NA	171	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.075000	0.631841	
mm_2700.1	chr1	127868676	127868876	+	1	NA	NA	NA	3	NM_178690	226407	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0.090000	0.706468	
mm_49820.1	chr6	37530058	37530258	+	1	NA	NA	NA	-15	NM_145364	208665	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0.015000	0.452736	
mm_44746.1	chr5	31219166	31219366	-	1	NA	NA	NA	1279	NM_008014	14208	Mm.14501	NM_008014	ENSMUSG00000029147	Ppm1g	AI385652|Fin13	protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform	protein-coding	0.010000	0.388060	
mm_171766.1	chr5	107900500	107900700	+	1	NA	NA	NA	72	NM_016980	100503670	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	0.090000	0.636816	
mm_152840.1	chr19	23448195	23448395	-	1	NA	NA	NA	27	NM_174857	71738	Mm.50841	NM_174857	ENSMUSG00000033207	Mamdc2	1200015L10Rik|AI591564|mamcan	MAM domain containing 2	protein-coding	0.055000	0.626866	-77(GCTTTAAAATTC,+,0.00)
mm_104686.1	chr11	97744617	97744817	-	1	NA	NA	NA	-13	NM_054051	108083	Mm.39700	NM_054051	ENSMUSG00000018547	Pip4k2b	AI848124|PI5P4Kbeta|Pip5k2b|c11	phosphatidylinositol-5-phosphate 4-kinase, type II, beta	protein-coding	0.150000	0.820896	
mm_65808.1	chr7	29006069	29006269	-	1	NA	NA	NA	23315	NM_008279	26411	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.000000	0.477612	
mm_140446.1	chr17	88581867	88582067	+	1	NA	NA	NA	-44588	NM_029858	77057	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.015000	0.497512	
mm_40000.1	chr5	32746022	32746222	+	1	NA	NA	NA	220	NM_001347332	320951	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.010000	0.597015	45(GCCCTGAAAAGC,-,0.00)
mm_171437.1	chr4	141060365	141060565	-	1	NA	NA	NA	80	NM_001145958	230872	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	0.115000	0.731343	
mm_124157.1	chr14	93371650	93371850	-	1	NA	NA	NA	517138	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.238806	
mm_102807.1	chr11	68871805	68872005	-	1	NA	NA	NA	-16648	NM_177060	320040	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	0.010000	0.557214	
mm_16718.1	chr2	7147683	7147883	-	1	NA	NA	NA	-66481	NM_001160292	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.005000	0.497512	
mm_26018.1	chr3	135438285	135438485	+	1	NA	NA	NA	280	NR_030689	319587	Mm.358971	NR_030689	ENSMUSG00000097032	4930539J05Rik	8030475D13Rik	RIKEN cDNA 4930539J05 gene	ncRNA	0.080000	0.626866	
mm_3010.1	chr1	133360160	133360360	+	1	NA	NA	NA	-3312	NM_175443	214253	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	0.015000	0.502488	
mm_147850.1	chr18	63692185	63692385	-	1	NA	NA	NA	74	NM_016792	53382	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.125000	0.741294	
mm_33521.1	chr4	130930693	130930893	+	1	NA	NA	NA	-13592	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.020000	0.532338	
mm_135568.1	chr16	50192795	50192995	-	1	NA	NA	NA	-120043	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.000000	0.338308	
mm_102986.1	chr11	69681975	69682175	-	1	NA	NA	NA	9	NM_001163571	80886	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0.125000	0.686567	
mm_138164.1	chr17	34261756	34261956	+	1	NA	NA	NA	-1371	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.010000	0.537313	
mm_84726.1	chr9	74863316	74863516	-	1	NA	NA	NA	1495	NM_008262	15379	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	0.090000	0.646766	
mm_5167.1	chr1	10162136	10162336	-	1	NA	NA	NA	70434	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.000000	0.358209	
mm_106835.1	chr12	8006149	8006349	+	1	NA	NA	NA	28572	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.467662	
mm_144957.1	chr18	37813277	37813477	+	1	NA	NA	NA	-1702	NM_033582	93707	Mm.247203	NM_033582	ENSMUSG00000023036	Pcdhgc4	-	protocadherin gamma subfamily C, 4	protein-coding	0.010000	0.512438	
mm_160340.1	chr8	15045920	15046120	-	1	NA	NA	NA	58	NR_037972	434285	Mm.334425	NM_001007591	ENSMUSG00000049008	BB014433	-	expressed sequence BB014433	ncRNA	0.025000	0.512438	
mm_138845.1	chr17	40561384	40561584	+	1	NA	NA	NA	-23	NM_001177529	433107	Mm.353122	NM_001177529	ENSMUSG00000092043	Esp6	EG433107|Esp5|Gm5494	exocrine gland secreted peptide 6	protein-coding	0.020000	0.452736	-10(CCATTTAAAGGA,+,0.00)
mm_118018.1	chr13	100786447	100786647	-	1	NA	NA	NA	-61	NM_172301	268697	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	0.100000	0.631841	
mm_73604.1	chr8	109999154	109999354	+	1	NA	NA	NA	8818	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.015000	0.537313	
mm_107493.1	chr12	38783415	38783615	+	1	NA	NA	NA	-196	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.000000	0.417910	
mm_22946.1	chr3	32073998	32074198	+	1	NA	NA	NA	171395	NM_028231	72413	Mm.64790	NM_028231	ENSMUSG00000037610	Kcnmb2	2700049B16Rik|3110031N04Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 2	protein-coding	0.020000	0.492537	-31(TCTTTTAAACCG,+,0.00)
mm_74867.1	chr8	25007863	25008063	-	1	NA	NA	NA	8959	NM_001270996	11502	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	0.005000	0.432836	
mm_17329.1	chr2	26503725	26503925	-	1	NA	NA	NA	-3	NM_008714	18128	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0.115000	0.781095	
mm_104197.1	chr11	87980381	87980581	-	1	NA	NA	NA	6104	NM_001168472	68097	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	0.015000	0.487562	57(GCTTTTATGTTC,+,0.00)
mm_142440.1	chr17	45572359	45572559	-	1	NA	NA	NA	802	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.060000	0.597015	
mm_149440.1	chr19	11480203	11480403	+	1	NA	NA	NA	10935	NM_028595	73656	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.005000	0.502488	
mm_33646.1	chr4	133039298	133039498	+	1	NA	NA	NA	27892	NM_146155	230793	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.125000	0.800995	
mm_92071.1	chr10	62599416	62599616	-	1	NA	NA	NA	2782	NM_019553	56200	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0.005000	0.373134	
mm_41466.1	chr5	91074520	91074720	+	1	NA	NA	NA	3	NM_007950	13874	Mm.4791	NM_007950	ENSMUSG00000029377	Ereg	EPR	epiregulin	protein-coding	0.050000	0.606965	
mm_138986.1	chr17	45487358	45487558	+	1	NA	NA	NA	-12520	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.015000	0.522388	
mm_139545.1	chr17	56764651	56764851	+	1	NA	NA	NA	0	NM_144858	224907	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	0.075000	0.651741	
mm_52173.1	chr6	99188994	99189194	+	1	NA	NA	NA	77421	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.010000	0.383085	
mm_128282.1	chr15	37007214	37007414	-	1	NA	NA	NA	88	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.165000	0.796020	
mm_173302.1	chrY	67624331	67624531	-	1	NA	NA	NA	-284384	NM_001160135	100039574	Mm.458579	NM_001160135	ENSMUSG00000094739	Gm20806	-	predicted gene, 20806	protein-coding	0.005000	0.388060	
mm_146035.1	chr18	69521823	69522023	+	1	NA	NA	NA	176202	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.015000	0.447761	
mm_22901.1	chr3	30855644	30855844	+	1	NA	NA	NA	-206	NM_001134385	71862	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.055000	0.552239	
mm_90217.1	chr10	121033899	121034099	+	1	NA	NA	NA	-5	NM_011915	24117	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0.095000	0.691542	
mm_53642.1	chr6	140623446	140623646	+	1	NA	NA	NA	44	NM_001005605	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.185000	0.800995	
mm_24863.1	chr3	95929238	95929438	+	1	NA	NA	NA	81	NM_023210	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.080000	0.651741	
mm_148212.1	chr18	80200480	80200680	-	1	NA	NA	NA	39	NM_199197	68731	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	0.100000	0.711443	
mm_11156.1	chr2	28542342	28542542	+	1	NA	NA	NA	8978	NM_001145836	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.020000	0.606965	
mm_164378.1	chr16	30436029	30436229	-	1	NA	NA	NA	-47599	NM_001128096	224088	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0.010000	0.437811	
mm_67722.1	chr7	90067892	90068092	-	1	NA	NA	NA	38833	NR_110364	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	0.010000	0.393035	
mm_920.1	chr1	55131002	55131202	+	1	NA	NA	NA	-143	NM_001310585	19070	Mm.291037	NM_025283	ENSMUSG00000025979	Mob4	2610109B12Rik|Mobkl3|Phocn|Prei3	MOB family member 4, phocein	protein-coding	0.100000	0.701493	
mm_155949.1	chrX	105079684	105079884	+	1	NA	NA	NA	28	NM_026312	67683	Mm.273405	NM_026312	ENSMUSG00000031226	Pbdc1	2610029G23Rik	polysaccharide biosynthesis domain containing 1	protein-coding	0.085000	0.562189	
mm_88760.1	chr10	80330069	80330269	+	1	NA	NA	NA	24	NM_139292	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.140000	0.766169	
mm_28006.1	chr3	83031013	83031213	-	1	NA	NA	NA	4960	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.035000	0.552239	73(GGCTCTTAAAAC,-,0.00)
mm_125270.1	chr15	36139601	36139801	+	1	NA	NA	NA	699	NM_001195748	626596	Mm.321798	NM_001195748	ENSMUSG00000037627	Rgs22	-	regulator of G-protein signalling 22	protein-coding	0.015000	0.512438	
mm_106661.1	chr11	121325500	121325700	-	1	NA	NA	NA	28847	NM_025793	66840	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0.000000	0.293532	
mm_136559.1	chr17	3115185	3115385	+	1	NA	NA	NA	313	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.160000	0.805970	
mm_6572.1	chr1	75192557	75192757	-	1	NA	NA	NA	497	NR_051999	52231	Mm.259326	NM_026187	ENSMUSG00000026199	Ankzf1	1300008P06Rik|2810025E10Rik|D1Ertd161e	ankyrin repeat and zinc finger domain containing 1	protein-coding	0.050000	0.601990	
mm_23836.1	chr3	82358006	82358206	+	1	NA	NA	NA	34	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0.065000	0.611940	
mm_25180.1	chr3	103279761	103279961	+	1	NA	NA	NA	568	NM_001079830	94093	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.165000	0.756219	
mm_61944.1	chr7	90183052	90183252	+	1	NA	NA	NA	52920	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.005000	0.313433	
mm_3736.1	chr1	155122322	155122522	+	1	NA	NA	NA	-22786	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.025000	0.442786	-71(CTCTATTTATGC,-,0.00)
mm_139399.1	chr17	52307498	52307698	+	1	NA	NA	NA	-295111	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.000000	0.407960	
mm_136172.1	chr16	88647693	88647893	-	1	NA	NA	NA	3	NM_027105	69533	Mm.30967	NM_027105	ENSMUSG00000071471	Krtap26-1	2310002B14Rik|AI507462	keratin associated protein 26-1	protein-coding	0.020000	0.512438	
mm_125288.1	chr15	36726582	36726782	+	1	NA	NA	NA	64250	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.020000	0.577114	
mm_132871.1	chr16	48611715	48611915	+	1	NA	NA	NA	160141	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.010000	0.457711	
mm_155740.1	chrX	96166495	96166695	+	1	NA	NA	NA	70550	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.035000	0.537313	
mm_14280.1	chr2	128796857	128797057	+	1	NA	NA	NA	-21346	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.000000	0.432836	
mm_113961.1	chr13	51171200	51171400	+	1	NA	NA	NA	275	NM_029173	75124	Mm.179243	NM_029173	ENSMUSG00000021396	Nxnl2	4930519N16Rik|Rdcvf2	nucleoredoxin-like 2	protein-coding	0.085000	0.691542	
mm_86176.1	chr9	119190166	119190366	-	1	NA	NA	NA	127	NM_001037749	382113	Mm.335525	NM_001037749	ENSMUSG00000070280	Slc22a14	Gm1128	solute carrier family 22 (organic cation transporter), member 14	protein-coding	0.010000	0.542289	
mm_43536.1	chr5	137350009	137350209	+	1	NA	NA	NA	0	NM_001159571	13846	Mm.34533	NM_010144	ENSMUSG00000029710	Ephb4	AI042935|Htk|MDK2|Myk1|Tyro11	Eph receptor B4	protein-coding	0.065000	0.666667	
mm_114758.1	chr13	85189360	85189560	+	1	NA	NA	NA	75	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0.130000	0.681592	
mm_90823.1	chr10	7935960	7936160	-	1	NA	NA	NA	20063	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.005000	0.338308	
mm_50481.1	chr6	48988180	48988380	+	1	NA	NA	NA	1419	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.005000	0.537313	
mm_9162.1	chr1	170965703	170965903	-	1	NA	NA	NA	10268	NM_001077189	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.005000	0.472637	
mm_117110.1	chr13	60177265	60177465	-	1	NA	NA	NA	170	NM_008086	14451	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	0.105000	0.651741	-31(GTATTTAAAGCC,+,0.00)
mm_47592.1	chr5	124862122	124862322	-	1	NA	NA	NA	-1	NM_144819	215707	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.140000	0.706468	
mm_164914.1	chr18	74531158	74531358	+	1	NA	NA	NA	-134	NR_045368	73606	Mm.444734	NR_045368		1700120E14Rik	-	RIKEN cDNA 1700120E14 gene	ncRNA	0.025000	0.517413	-33(CCCTATAAAGGA,+,0.00),-33(CCCTATAAAGGA,-,0.00)
mm_108954.1	chr12	102368153	102368353	+	1	NA	NA	NA	71560	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.020000	0.562189	
mm_172628.1	chr8	20410261	20410461	-	1	NA	NA	NA	14453	NR_028428	381598	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	0.010000	0.477612	
mm_79790.1	chr9	63731530	63731730	+	1	NA	NA	NA	26364	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.010000	0.547264	
mm_122107.1	chr14	30921885	30922085	-	1	NA	NA	NA	1602	NM_008407	16426	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	0.010000	0.537313	
mm_107539.1	chr12	40572738	40572938	+	1	NA	NA	NA	126785	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.005000	0.427861	
mm_19159.1	chr2	83722889	83723089	-	1	NA	NA	NA	-1408	NM_008402	16410	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.005000	0.452736	31(GGGTTTAAGAGG,-,0.00)
mm_122252.1	chr14	34102566	34102766	-	1	NA	NA	NA	88	NM_001251843	105518	Mm.246608	NM_001251843	ENSMUSG00000095493	A630023A22Rik	AI461879	RIKEN cDNA A630023A22 gene	protein-coding	0.020000	0.502488	
mm_107808.1	chr12	65039637	65039837	+	1	NA	NA	NA	3403	NM_177806	328110	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	0.005000	0.477612	
mm_164307.1	chr15	103897360	103897560	-	1	NA	NA	NA	1840	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.025000	0.422886	
mm_69852.1	chr7	141427904	141428104	-	1	NA	NA	NA	1416	NM_021316	57754	Mm.87027	NM_021316	ENSMUSG00000060240	Cend1	1500001H12Rik|AI415214|BM88	cell cycle exit and neuronal differentiation 1	protein-coding	0.000000	0.517413	
mm_39747.1	chr5	29569725	29569925	+	1	NA	NA	NA	583	NM_133907	100763	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	0.075000	0.621891	
mm_76203.1	chr8	83106013	83106213	-	1	NA	NA	NA	-59239	NM_001111304	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.005000	0.348259	
mm_118831.1	chr14	25607500	25607700	+	1	NA	NA	NA	4087	NM_001309430	100188919	Mm.473810	NM_001309430		Israa	-	immune system released activating agent	protein-coding	0.145000	0.786070	
mm_61847.1	chr7	88296997	88297197	+	1	NA	NA	NA	19012	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.020000	0.482587	
mm_56426.1	chr6	97310961	97311161	-	1	NA	NA	NA	-58281	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.025000	0.432836	-6(TCTTTTAAGCAG,+,0.00)
mm_129394.1	chr15	78244745	78244945	-	1	NA	NA	NA	34	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.015000	0.621891	
mm_99326.1	chr11	101459645	101459845	+	1	NA	NA	NA	6454	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.035000	0.616915	
mm_8598.1	chr1	156034672	156034872	-	1	NA	NA	NA	45	NM_001160019	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.000000	0.422886	
mm_70554.1	chr8	13060814	13061014	+	1	NA	NA	NA	6	NM_025834	66901	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.025000	0.592040	
mm_28081.1	chr3	84582558	84582758	-	1	NA	NA	NA	-33	NM_001293801	99889	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	0.095000	0.681592	
mm_13586.1	chr2	112383750	112383950	+	1	NA	NA	NA	4639	NM_024254	72425	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	0.005000	0.383085	
mm_151423.1	chr19	56826178	56826378	+	1	NA	NA	NA	3	NM_001002240	83561	Mm.247541	NM_031387	ENSMUSG00000025081	Tdrd1	MTR-1	tudor domain containing 1	protein-coding	0.105000	0.676617	
mm_122576.1	chr14	50826830	50827030	-	1	NA	NA	NA	18984	NM_009632	11546	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0.015000	0.482587	9(TCTTATAAACAG,+,0.00)
mm_106111.1	chr11	116334063	116334263	-	1	NA	NA	NA	1191	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.065000	0.611940	
mm_3970.1	chr1	164181610	164181810	+	1	NA	NA	NA	-29493	NR_037987	100503816	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	0.035000	0.512438	
mm_88514.1	chr10	78049764	78049964	+	1	NA	NA	NA	22	NM_019448	54427	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.030000	0.611940	
mm_32335.1	chr4	104389781	104389981	+	1	NA	NA	NA	22343	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding	0.000000	0.363184	
mm_66926.1	chr7	61528744	61528944	-	1	NA	NA	NA	86483	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.000000	0.328358	
mm_86604.1	chr10	13502611	13502811	+	1	NA	NA	NA	1683	NM_025799	66848	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0.020000	0.467662	
mm_143793.1	chr17	81838328	81838528	-	1	NA	NA	NA	-100041	NM_011406	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.015000	0.462687	
mm_109042.1	chr12	104236142	104236342	+	1	NA	NA	NA	-11654	NR_033450	546546	Mm.390522	NM_001034870		Serpina3h	6C28|Spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3H	pseudo	0.010000	0.502488	
mm_85247.1	chr9	99136005	99136205	-	1	NA	NA	NA	4106	NM_029094	74769	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol 3-kinase, catalytic, beta polypeptide	protein-coding	0.005000	0.388060	
mm_60777.1	chr7	45559289	45559489	+	1	NA	NA	NA	4461	NM_025330	66065	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.015000	0.621891	-16(CCCTTTAGACCC,+,0.00)
mm_80906.1	chr9	100643434	100643634	+	1	NA	NA	NA	-89	NM_009282	20842	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	0.140000	0.761194	
mm_12506.1	chr2	71873270	71873470	+	1	NA	NA	NA	146	NM_172665	228026	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.140000	0.776119	
mm_100880.1	chr11	5976224	5976424	-	1	NA	NA	NA	20566	NM_019661	56418	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0.035000	0.641791	
mm_82667.1	chr9	22129963	22130163	-	1	NA	NA	NA	535	NM_007388	11433	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.015000	0.582090	
mm_14010.1	chr2	122147385	122147585	+	1	NA	NA	NA	-202	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.015000	0.452736	47(GACTTTATAAGA,-,0.00)
mm_100620.1	chr11	121592503	121592703	+	1	NA	NA	NA	-73261	NM_178763	319530	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.010000	0.482587	
mm_45749.1	chr5	86676232	86676432	-	1	NA	NA	NA	-34	NM_177024	319875	Mm.253994	NM_177024	ENSMUSG00000035861	Tmprss11b	9930019B18Rik|Tmprss11bnl	transmembrane protease, serine 11B	protein-coding	0.015000	0.368159	
mm_121746.1	chr14	18893298	18893498	-	1	NA	NA	NA	229	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0.130000	0.771144	
mm_111380.1	chr12	87388118	87388318	-	1	NA	NA	NA	137	NM_011479	20773	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.130000	0.751244	
mm_67110.1	chr7	70358930	70359130	-	1	NA	NA	NA	1563	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.105000	0.671642	
mm_111022.1	chr12	79089542	79089742	-	1	NA	NA	NA	28	NM_029988	110417	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	0.110000	0.661692	
mm_115031.1	chr13	99247684	99247884	+	1	NA	NA	NA	62961	NM_001004149	238803	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.005000	0.497512	
mm_63216.1	chr7	126272690	126272890	+	1	NA	NA	NA	171	NM_145587	104175	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.090000	0.686567	
mm_60125.1	chr7	36700539	36700739	+	1	NA	NA	NA	2521	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.015000	0.422886	
mm_143994.1	chr17	87974792	87974992	-	1	NA	NA	NA	-158	NM_010830	17688	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.100000	0.711443	
mm_141092.1	chr17	25985529	25985729	-	1	NA	NA	NA	245	NM_001347334	50817	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	0.140000	0.681592	
mm_46891.1	chr5	113989642	113989842	-	1	NA	NA	NA	4015	NM_198109	231637	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot homolog 1 (Drosophila)	protein-coding	0.035000	0.552239	
mm_143193.1	chr17	62606581	62606781	-	1	NA	NA	NA	274636	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.000000	0.378109	-37(CTGTCTTAAAGC,-,0.00)
mm_152219.1	chr19	8263095	8263295	-	1	NA	NA	NA	-44295	NM_001347426	236293	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	0.010000	0.318408	-66(CCTTTTAAAATA,+,0.00)
mm_109170.1	chr12	108370905	108371105	+	1	NA	NA	NA	-148	NM_001286346	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.010000	0.567164	-72(GTCCATAAATGG,-,0.00),-70(CCATAAATGGTC,+,0.00)
mm_75511.1	chr8	54529256	54529456	-	1	NA	NA	NA	642	NM_029701	76687	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.035000	0.527363	
mm_60388.1	chr7	44473938	44474138	+	1	NA	NA	NA	3691	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.422886	
mm_92731.1	chr10	80855104	80855304	-	1	NA	NA	NA	5	NM_025349	66094	Mm.379101	NM_025349	ENSMUSG00000035215	Lsm7	0910001B06Rik|1110033F18Rik	LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.125000	0.651741	
mm_159056.1	chr1	191098224	191098424	+	1	NA	NA	NA	-90	NM_030060	381319	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.110000	0.796020	
mm_67278.1	chr7	78451606	78451806	-	1	NA	NA	NA	126132	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	0.005000	0.427861	
mm_20638.1	chr2	132021015	132021215	-	1	NA	NA	NA	8873	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.005000	0.592040	
mm_127680.1	chr15	102927989	102928189	+	1	NA	NA	NA	6958	NM_010464	15422	Mm.207062	NM_010464	ENSMUSG00000001655	Hoxc13	-	homeobox C13	protein-coding	0.015000	0.432836	
mm_132475.1	chr16	36709690	36709890	+	1	NA	NA	NA	15812	NM_001285791	106347	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.005000	0.477612	
mm_141880.1	chr17	34858019	34858219	-	1	NA	NA	NA	-487	NR_105938	102465587		NR_105938	ENSMUSG00000098445	Mir6972	Gm27810|mmu-mir-6972	microRNA 6972	ncRNA	0.025000	0.527363	
mm_68384.1	chr7	109438908	109439108	-	1	NA	NA	NA	45	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	0.085000	0.656716	
mm_121577.1	chr14	122912976	122913176	+	1	NA	NA	NA	89	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.115000	0.716418	
mm_55534.1	chr6	70726862	70727062	-	1	NA	NA	NA	65213	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.388060	
mm_39080.1	chr4	154359651	154359851	-	1	NA	NA	NA	-59856	NM_001112744	230972	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.015000	0.557214	
mm_136392.1	chr16	93142169	93142369	-	1	NA	NA	NA	210920	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.015000	0.507463	
mm_115544.1	chr13	8815903	8816103	-	1	NA	NA	NA	55041	NM_001039389	207615	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.010000	0.338308	
mm_85871.1	chr9	110909578	110909778	-	1	NA	NA	NA	7183	NM_001195437	235634	Mm.31788	NM_001195437	ENSMUSG00000096393	Gm590	-	predicted gene 590	protein-coding	0.015000	0.457711	
mm_128382.1	chr15	42676873	42677073	-	1	NA	NA	NA	4	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.040000	0.527363	
mm_125732.1	chr15	73176101	73176301	+	1	NA	NA	NA	8746	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.030000	0.442786	
mm_19631.1	chr2	102813777	102813977	-	1	NA	NA	NA	87788	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.000000	0.427861	
mm_142831.1	chr17	51778950	51779150	-	1	NA	NA	NA	33004	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.005000	0.407960	
mm_138828.1	chr17	39847920	39848120	+	1	NA	NA	NA	5023	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.080000	0.577114	
mm_32917.1	chr4	119136591	119136791	+	1	NA	NA	NA	27946	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.005000	0.402985	
mm_137855.1	chr17	31108309	31108509	+	1	NA	NA	NA	21202	NM_011575	21786	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.065000	0.601990	-23(GACTATAAGAGA,-,0.00)
mm_160986.1	chr11	104467667	104467867	-	1	NA	NA	NA	-25476	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.010000	0.417910	
mm_150968.1	chr19	46500663	46500863	+	1	NA	NA	NA	-885	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.040000	0.487562	
mm_113492.1	chr13	37400904	37401104	+	1	NA	NA	NA	55659	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.000000	0.407960	
mm_84912.1	chr9	79977723	79977923	-	1	NA	NA	NA	59	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.035000	0.512438	
mm_169037.1	chr13	13437564	13437764	+	1	NA	NA	NA	62	NM_010917	18073	Mm.4691	NM_010917	ENSMUSG00000005397	Nid1	A630025O17|Nid|entactin|entactin-1|nidogen-1	nidogen 1	protein-coding	0.075000	0.641791	
mm_134066.1	chr16	8637434	8637634	-	1	NA	NA	NA	167	NM_025708	66690	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	0.080000	0.522388	
mm_4074.1	chr1	166253970	166254170	+	1	NA	NA	NA	-69	NM_001164528	100039795	Mm.101743	NM_001164528	ENSMUSG00000040612	Ildr2	2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|ENSMUSG00000040612|Ll	immunoglobulin-like domain containing receptor 2	protein-coding	0.140000	0.746269	
mm_46191.1	chr5	97995946	97996146	-	1	NA	NA	NA	34916	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.010000	0.547264	
mm_44726.1	chr5	31047763	31047963	-	1	NA	NA	NA	216	NM_177870	330064	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	0.060000	0.542289	
mm_100740.1	chr11	4104719	4104919	-	1	NA	NA	NA	-9388	NM_026443	67900	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0.020000	0.522388	
mm_141648.1	chr17	33660181	33660381	-	1	NA	NA	NA	22186	NR_028279	378460	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	0.005000	0.472637	
mm_27954.1	chr3	79842563	79842763	-	1	NA	NA	NA	-1	NM_027495	70652	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.050000	0.462687	
mm_97362.1	chr11	77506837	77507037	+	1	NA	NA	NA	6336	NM_001024920	216964	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	0.015000	0.631841	
mm_8117.1	chr1	135984195	135984395	-	1	NA	NA	NA	22047	NM_177642	226438	Mm.119675	NM_177642	ENSMUSG00000051985	Igfn1	9830123M21Rik	immunoglobulin-like and fibronectin type III domain containing 1	protein-coding	0.025000	0.616915	
mm_86712.1	chr10	18855702	18855902	+	1	NA	NA	NA	10731	NM_022032	64058	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	0.025000	0.527363	
mm_88077.1	chr10	67979615	67979815	+	1	NA	NA	NA	117	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.090000	0.646766	-94(CTGTTTTAAAGA,-,0.00)
mm_42479.1	chr5	115468383	115468583	+	1	NA	NA	NA	2217	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.005000	0.422886	-2(GCTTATCTAGAG,+,0.00)
mm_165328.1	chr2	112265706	112265906	+	1	NA	NA	NA	-508	NM_133649	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.155000	0.771144	
mm_124776.1	chr15	7193417	7193617	+	1	NA	NA	NA	52975	NM_013584	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.010000	0.472637	
mm_164859.1	chr18	53147731	53147931	+	1	NA	NA	NA	-28534	NM_026386	67804	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.030000	0.492537	
mm_161833.1	chr17	84368584	84368784	-	1	NA	NA	NA	97524	NM_183021	240174	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.025000	0.497512	
mm_67623.1	chr7	84086402	84086602	-	1	NA	NA	NA	3	NM_030728	80982	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	0.090000	0.671642	-35(GACTATAAAAAG,-,0.00)
mm_45613.1	chr5	75835547	75835747	-	1	NA	NA	NA	142781	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.045000	0.522388	
mm_128138.1	chr15	31467876	31468076	-	1	NA	NA	NA	-14287	NM_145852	252967	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.005000	0.477612	28(AGCTCTTAAAGA,-,0.00),29(GCTCTTAAAGAG,+,0.00)
mm_74669.1	chr8	13686460	13686660	-	1	NA	NA	NA	-8973	NM_009025	19414	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.020000	0.587065	
mm_21081.1	chr2	152933110	152933310	-	1	NA	NA	NA	-2	NM_010226	14239	Mm.205798	NM_010226	ENSMUSG00000074676	Foxs1	FREAC10|Fkh3|Fkhl18	forkhead box S1	protein-coding	0.030000	0.597015	-36(GCCTTTCTAGGC,+,0.00)
mm_89689.1	chr10	97565554	97565754	+	1	NA	NA	NA	153	NM_008524	17022	Mm.18888	NM_008524	ENSMUSG00000036446	Lum	Ldc|SLRR2D	lumican	protein-coding	0.020000	0.547264	
mm_148254.1	chr18	80742918	80743118	-	1	NA	NA	NA	-29947	NM_001164109	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.005000	0.427861	
mm_36297.1	chr4	66404384	66404584	-	1	NA	NA	NA	-1	NM_207109	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding	0.105000	0.726368	
mm_19037.1	chr2	76975011	76975211	-	1	NA	NA	NA	7436	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.020000	0.532338	
mm_130978.1	chr15	103344466	103344666	-	1	NA	NA	NA	-4480	NM_013866	29813	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.005000	0.547264	
mm_113069.1	chr13	23752246	23752446	+	1	NA	NA	NA	-34	NM_178203	319150		NM_178203	ENSMUSG00000069267	Hist1h3b	H3-53	histone cluster 1, H3b	protein-coding	0.060000	0.537313	-33(TTGTATAAAAGG,-,0.00)
mm_125380.1	chr15	40654976	40655176	+	1	NA	NA	NA	34	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding	0.150000	0.810945	
mm_99308.1	chr11	101376564	101376764	+	1	NA	NA	NA	8948	NM_008061	14377	Mm.18064	NM_008061	ENSMUSG00000078650	G6pc	AW107337|G6Pase|G6pt|Glc-6-Pase	glucose-6-phosphatase, catalytic	protein-coding	0.020000	0.522388	
mm_9687.1	chr1	178335981	178336181	-	1	NA	NA	NA	1703	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.050000	0.467662	
mm_79837.1	chr9	64806030	64806230	+	1	NA	NA	NA	-4881	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.015000	0.477612	
mm_133433.1	chr16	87692363	87692563	+	1	NA	NA	NA	-6491	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.005000	0.507463	86(CTCCTTTAAAAG,-,0.00),87(TCCTTTAAAAGA,-,0.00),88(CCTTTAAAAGAT,+,0.00)
mm_74324.1	chr8	126867952	126868152	+	1	NA	NA	NA	77869	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.005000	0.517413	
mm_76071.1	chr8	78810189	78810389	-	1	NA	NA	NA	10863	NM_001191004	78651	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.020000	0.527363	
mm_44259.1	chr5	5514719	5514919	-	1	NA	NA	NA	-30	NM_001193660	64945	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding	0.095000	0.666667	
mm_76426.1	chr8	84977974	84978174	-	1	NA	NA	NA	674	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.095000	0.646766	
mm_101257.1	chr11	20831221	20831421	-	1	NA	NA	NA	-213	NM_173752	216551	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.080000	0.726368	
mm_128857.1	chr15	72547598	72547798	-	1	NA	NA	NA	-1419	NM_001033876	223604	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding	0.110000	0.691542	
mm_63722.1	chr7	130834416	130834616	+	1	NA	NA	NA	-31208	NM_001346515	101476	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.075000	0.646766	
mm_52271.1	chr6	108512330	108512530	+	1	NA	NA	NA	22687	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.005000	0.412935	
mm_43583.1	chr5	137746864	137747064	+	1	NA	NA	NA	995	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.025000	0.661692	
mm_13184.1	chr2	93186704	93186904	+	1	NA	NA	NA	-780	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.000000	0.497512	-33(TGCTATAAAGGG,-,0.00)
mm_171262.1	chr3	84155623	84155823	-	1	NA	NA	NA	63	NM_029797	76915	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	0.095000	0.686567	
mm_39943.1	chr5	31849375	31849575	+	1	NA	NA	NA	151425	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.010000	0.437811	76(GGCCTTAAAATG,-,0.00)
mm_28493.1	chr3	92484291	92484491	-	1	NA	NA	NA	1490	NM_009264	20753	Mm.331191	NM_009264	ENSMUSG00000050359	Sprr1a	AI528815|SPR1a|mSPRR1A	small proline-rich protein 1A	protein-coding	0.010000	0.661692	
mm_30009.1	chr3	135657271	135657471	-	1	NA	NA	NA	34176	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.005000	0.333333	
mm_128305.1	chr15	37764447	37764647	-	1	NA	NA	NA	27453	NM_001170866	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.015000	0.532338	
mm_31792.1	chr4	63935546	63935746	+	1	NA	NA	NA	-74362	NM_009403	21949	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.020000	0.497512	
mm_16824.1	chr2	11473940	11474140	-	1	NA	NA	NA	28050	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.005000	0.512438	20(GCTTTTATGCAT,+,0.00)
mm_154826.1	chrX	17609572	17609772	+	1	NA	NA	NA	-37347	NM_028058	72018	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	0.000000	0.398010	-5(GCCTTTTTGAGG,-,0.00)
mm_68934.1	chr7	126501856	126502056	-	1	NA	NA	NA	469	NM_001347658	233871	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.040000	0.567164	
mm_140467.1	chr17	93199032	93199232	+	1	NA	NA	NA	-36	NM_001315504	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.035000	0.507463	
mm_170310.1	chr18	35495157	35495357	+	1	NA	NA	NA	3668	NM_030749	81500	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	0.015000	0.532338	
mm_68083.1	chr7	101870634	101870834	-	1	NA	NA	NA	54	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.010000	0.502488	-84(AGCCATAAAGGC,-,0.00)
mm_65221.1	chr7	19699628	19699828	-	1	NA	NA	NA	-540	NM_009696	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.000000	0.467662	-68(GCTTTTATGAGG,+,0.00)
mm_8544.1	chr1	155099439	155099639	-	1	NA	NA	NA	97	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.075000	0.587065	
mm_162168.1	chrX	100774432	100774632	+	1	NA	NA	NA	37	NM_001177779	53310	Mm.4615	NM_016747	ENSMUSG00000000881	Dlg3	Dlgh3|SAP102|mKIAA1232	discs, large homolog 3 (Drosophila)	protein-coding	0.050000	0.616915	
mm_88388.1	chr10	76468981	76469181	+	1	NA	NA	NA	33	NM_172550	216119	Mm.344778	NM_172550	ENSMUSG00000033126	Ybey	1110068N23Rik|A130042E20Rik|C21orf57|ORF57|ORF66	ybeY metallopeptidase	protein-coding	0.080000	0.582090	
mm_89163.1	chr10	86139095	86139295	+	1	NA	NA	NA	43341	NR_038024	78170	Mm.444790	NR_038024		4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0.025000	0.527363	
mm_85044.1	chr9	89703098	89703298	-	1	NA	NA	NA	1845	NM_025360	66111	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	0.010000	0.363184	
mm_63357.1	chr7	127014558	127014758	+	1	NA	NA	NA	-64	NM_080638	78388	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0.015000	0.547264	-36(GTGTATTTAAAG,-,0.00),-34(GTATTTAAAGGG,+,0.00),-34(GTATTTAAAGGG,-,0.00)
mm_151299.1	chr19	55552712	55552912	+	1	NA	NA	NA	149392	NR_045318	77594	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.005000	0.472637	-8(TTTTTTAAAGTC,+,0.00)
mm_47466.1	chr5	123671003	123671203	-	1	NA	NA	NA	13258	NM_019765	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.025000	0.532338	
mm_2335.1	chr1	92831703	92831903	+	1	NA	NA	NA	117	NM_016696	14733	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.145000	0.751244	
mm_66547.1	chr7	45211401	45211601	-	1	NA	NA	NA	382	NM_015789	50722	Mm.27287	NM_015789	ENSMUSG00000030792	Dkkl1	AI414495|SGY|SGY-1|SGY1|Soggy|mSgy	dickkopf-like 1	protein-coding	0.025000	0.557214	
mm_89532.1	chr10	94499223	94499423	+	1	NA	NA	NA	-15534	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.020000	0.472637	
mm_89659.1	chr10	97483271	97483471	+	1	NA	NA	NA	1040	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.005000	0.437811	
mm_137780.1	chr17	29493038	29493238	+	1	NA	NA	NA	2093	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.010000	0.557214	4(GTGTATAAAGGC,-,0.00)
mm_95569.1	chr11	52396362	52396562	+	1	NA	NA	NA	34	NM_153117	213673	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.130000	0.701493	
mm_23641.1	chr3	67159058	67159258	+	1	NA	NA	NA	173486	NM_025822	66880	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	0.000000	0.308458	
mm_145888.1	chr18	65582166	65582366	+	1	NA	NA	NA	2036	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.015000	0.517413	
mm_27518.1	chr3	57294694	57294894	-	1	NA	NA	NA	7125	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	0.030000	0.502488	
mm_129690.1	chr15	81522827	81523027	-	1	NA	NA	NA	56611	NM_019712	56438	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.030000	0.542289	
mm_109766.1	chr12	118316489	118316689	+	1	NA	NA	NA	-15149	NM_001166385	20688	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0.000000	0.388060	
mm_130056.1	chr15	89180591	89180791	-	1	NA	NA	NA	97	NM_001284506	140570	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.155000	0.766169	
mm_102654.1	chr11	63463997	63464197	-	1	NA	NA	NA	-78028	NR_105772	102466632		NR_105772	ENSMUSG00000098829	Mir6354	Gm27282|mmu-mir-6354	microRNA 6354	ncRNA	0.025000	0.497512	
mm_42246.1	chr5	113873049	113873249	+	1	NA	NA	NA	35557	NM_011779	23790	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0.010000	0.562189	-62(GGCCATATATGG,-,0.00)
mm_784.1	chr1	45321515	45321715	+	1	NA	NA	NA	10077	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.005000	0.462687	
mm_60787.1	chr7	45566867	45567067	+	1	NA	NA	NA	-3186	NM_009737	12036	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.005000	0.537313	
mm_22388.1	chr2	181157698	181157898	-	1	NA	NA	NA	-783	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.005000	0.487562	
mm_155759.1	chrX	96167752	96167952	+	1	NA	NA	NA	71807	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.000000	0.432836	
mm_157320.1	chrX	21714820	21715020	-	1	NA	NA	NA	20	NM_020049	56774	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	0.020000	0.537313	-100(CCATTTATGGAG,+,0.00)
mm_72918.1	chr8	91073976	91074176	+	1	NA	NA	NA	4019	NM_001282000	19651	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	retinoblastoma-like 2	protein-coding	0.020000	0.467662	
mm_170482.1	chr19	13899369	13899569	+	1	NA	NA	NA	-11261	NM_146634	258627	Mm.453527	NM_146634	ENSMUSG00000059105	Olfr1504	MOR212-2	olfactory receptor 1504	protein-coding	0.020000	0.432836	
mm_133329.1	chr16	78309458	78309658	+	1	NA	NA	NA	7887	NM_001276263	13052	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	0.020000	0.502488	
mm_139035.1	chr17	46163142	46163342	+	1	NA	NA	NA	2210	NM_001145979	56055	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.025000	0.522388	
mm_11102.1	chr2	28095367	28095567	+	1	NA	NA	NA	-10589	NM_010190	14134	Mm.182935	NM_010190	ENSMUSG00000026835	Fcnb	Fcn2	ficolin B	protein-coding	0.000000	0.517413	
mm_8943.1	chr1	164437950	164438150	-	1	NA	NA	NA	20305	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.015000	0.333333	
mm_123501.1	chr14	66213722	66213922	-	1	NA	NA	NA	-270	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.020000	0.537313	
mm_167537.1	chr9	21962217	21962417	-	1	NA	NA	NA	1259	NM_010149	13857	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	0.045000	0.611940	-29(CCTTTTCTAGCG,+,0.00)
mm_63549.1	chr7	128070058	128070258	+	1	NA	NA	NA	7518	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.005000	0.417910	
mm_169073.1	chr13	30370258	30370458	+	1	NA	NA	NA	34002	NM_177322	11607	Mm.35062	NM_177322	ENSMUSG00000049115	Agtr1a	1810074K20Rik|AG2S|AI551199|AT1|AT1a|AT2R1|AT2R1A|Agtr-1a|Agtr1|Angtr-1a	angiotensin II receptor, type 1a	protein-coding	0.045000	0.487562	
mm_170837.1	chr2	177085713	177085913	-	1	NA	NA	NA	-158000	NM_001305133	102639598	Mm.379980	NM_029813	ENSMUSG00000074527	Gm14296	-	predicted gene 14296	protein-coding	0.040000	0.482587	-35(ACTTATATAGCA,+,0.00)
mm_136467.1	chr16	95585478	95585678	-	1	NA	NA	NA	1015	NM_001302152	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	0.090000	0.716418	
mm_51942.1	chr6	91709346	91709546	+	1	NA	NA	NA	25379	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.030000	0.442786	
mm_148355.1	chr18	84720678	84720878	-	1	NA	NA	NA	536	NM_173770	240479	Mm.472378	NM_173770	ENSMUSG00000047992	Fam69c	B230399E16Rik	family with sequence similarity 69, member C	protein-coding	0.025000	0.522388	
mm_169101.1	chr13	43355498	43355698	-	1	NA	NA	NA	-15118	NM_178848	68346	Mm.35325	NM_178848	ENSMUSG00000054021	Sirt5	0610012J09Rik|1500032M05Rik|AV001953	sirtuin 5	protein-coding	0.005000	0.472637	
mm_60173.1	chr7	41335343	41335543	+	1	NA	NA	NA	51116	NM_001033782	434172	Mm.247214	NM_001033782	ENSMUSG00000072259	Gm5592	EG434172	predicted gene 5592	protein-coding	0.010000	0.497512	
mm_147831.1	chr18	62191364	62191564	-	1	NA	NA	NA	-11483	NM_007420	11555	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.020000	0.542289	
mm_2898.1	chr1	131931978	131932178	+	1	NA	NA	NA	21620	NM_001145804	98415	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.005000	0.348259	
mm_106636.1	chr11	120990929	120991129	-	1	NA	NA	NA	304	NM_139059	104318	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0.125000	0.726368	
mm_172370.1	chr7	123852570	123852770	+	1	NA	NA	NA	-130511	NM_001252072	628779	Mm.40210	NM_001252072	ENSMUSG00000078591	Hs3st4	EG628779|Gm6915	heparan sulfate (glucosamine) 3-O-sulfotransferase 4	protein-coding	0.020000	0.477612	
mm_10002.1	chr1	191540977	191541177	-	1	NA	NA	NA	34467	NM_001305233	76843	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	0.030000	0.507463	
mm_169289.1	chr13	9834275	9834475	-	1	NA	NA	NA	-69054	NM_144516	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.090000	0.507463	
mm_24105.1	chr3	88141669	88141869	+	1	NA	NA	NA	-603	NM_001310587	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.030000	0.462687	-32(GGATTTTAAAAG,-,0.00),-31(GATTTTAAAAGA,-,0.00)
mm_100133.1	chr11	115974680	115974880	+	1	NA	NA	NA	55	NM_133663	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.095000	0.706468	
mm_2993.1	chr1	133181272	133181472	+	1	NA	NA	NA	50206	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.025000	0.567164	
mm_45406.1	chr5	66299275	66299475	-	1	NA	NA	NA	38290	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.005000	0.368159	-27(TTCCATTAAAGC,-,0.00)
mm_98729.1	chr11	96351896	96352096	+	1	NA	NA	NA	364	NM_134032	103889	Mm.281153	NM_134032	ENSMUSG00000075588	Hoxb2	AI894218|Hox-2.8|Hoxbes2	homeobox B2	protein-coding	0.045000	0.611940	
mm_135764.1	chr16	56717352	56717552	-	1	NA	NA	NA	-2	NM_019678	21787	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0.100000	0.686567	
mm_136303.1	chr16	91597301	91597501	-	1	NA	NA	NA	279	NM_030018	77975	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0.150000	0.776119	
mm_60497.1	chr7	44478781	44478981	+	1	NA	NA	NA	-5636	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.402985	
mm_50162.1	chr6	41547401	41547601	+	1	NA	NA	NA	25725	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.432836	-34(GACTATAAGAGG,-,0.00)
mm_135736.1	chr16	55838536	55838736	-	1	NA	NA	NA	5	NM_030612	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.035000	0.567164	-51(CCCTATAAAGGA,+,0.00),-51(CCCTATAAAGGA,-,0.00)
mm_36419.1	chr4	80003381	80003581	-	1	NA	NA	NA	-830732	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.015000	0.383085	
mm_98631.1	chr11	96081097	96081297	+	1	NA	NA	NA	-5503	NM_007506	11951	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	0.040000	0.462687	
mm_171956.1	chr5	80540096	80540296	-	1	NA	NA	NA	-480375	NM_001347367	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.005000	0.378109	
mm_114996.1	chr13	97600173	97600373	+	1	NA	NA	NA	40273	NR_046157	328314	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.025000	0.557214	
mm_62118.1	chr7	96648001	96648201	+	1	NA	NA	NA	153448	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA	0.005000	0.492537	
mm_120724.1	chr14	73138689	73138889	+	1	NA	NA	NA	-3721	NM_001170694	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.010000	0.477612	
mm_128300.1	chr15	37459293	37459493	-	1	NA	NA	NA	-11	NM_001170868	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.035000	0.542289	
mm_61730.1	chr7	81862483	81862683	+	1	NA	NA	NA	-104	NM_001291282	107769	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.015000	0.517413	
mm_88364.1	chr10	75937215	75937415	+	1	NA	NA	NA	1742	NM_175329	103172	Mm.333849	NM_175329	ENSMUSG00000049422	Chchd10	1620401E04Rik|AI267078|Ndg2	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding	0.015000	0.601990	
mm_35984.1	chr4	55398958	55399158	-	1	NA	NA	NA	19784	NR_040674	100415914	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	OTTMUSG00000007226	predicted gene 12505	ncRNA	0.045000	0.542289	
mm_124125.1	chr14	79662032	79662232	-	1	NA	NA	NA	51	NM_001310655	16840	Mm.46561	NM_010701	ENSMUSG00000022025	Cnmd	Bricd3|ChM-I|Chmd|Lect1	chondromodulin	protein-coding	0.020000	0.601990	
mm_100533.1	chr11	120608397	120608597	+	1	NA	NA	NA	20	NM_001347616	208990	Mm.29444	NM_153288	ENSMUSG00000044034	Npb	-	neuropeptide B	protein-coding	0.065000	0.666667	
mm_115119.1	chr13	104228900	104229100	+	1	NA	NA	NA	-156	NM_172807	238831	Mm.98910	NM_172807	ENSMUSG00000021713	Ppwd1	4632422M10Rik|A330090G21Rik	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding	0.075000	0.626866	
mm_135881.1	chr16	63864048	63864248	-	1	NA	NA	NA	9	NM_010140	13837	Mm.1977	NM_010140	ENSMUSG00000052504	Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding	0.055000	0.582090	
mm_83185.1	chr9	40994481	40994681	-	1	NA	NA	NA	10047	NM_001281954	54698	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	0.055000	0.567164	
mm_41990.1	chr5	107725962	107726162	+	1	NA	NA	NA	-257	NM_001267621	14581	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.035000	0.512438	
mm_18402.1	chr2	60284114	60284314	-	1	NA	NA	NA	270	NM_025422	66205	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.095000	0.651741	
mm_123819.1	chr14	70599707	70599907	-	1	NA	NA	NA	28	NM_194345	239170	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	0.130000	0.810945	
mm_35447.1	chr4	40239705	40239905	-	1	NA	NA	NA	20	NM_172689	230073	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.070000	0.626866	
mm_151711.1	chr19	4615574	4615774	-	1	NA	NA	NA	-7	NM_153388	225875	Mm.329675	NM_153388	ENSMUSG00000045045	Lrfn4	BC023156|Salm3	leucine rich repeat and fibronectin type III domain containing 4	protein-coding	0.080000	0.701493	
mm_64932.1	chr7	16286666	16286866	-	1	NA	NA	NA	29	NM_001136471	243846	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0.110000	0.671642	-96(GACCCTTTAAGG,-,0.00),-94(CCCTTTAAGGCA,+,0.00),-93(CCTTTAAGGCAC,+,0.00)
mm_79409.1	chr9	55149505	55149705	+	1	NA	NA	NA	236	NM_001346657	109161	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0.140000	0.731343	
mm_67898.1	chr7	99626714	99626914	-	1	NA	NA	NA	289	NM_001195529	100503386	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	0.075000	0.676617	
mm_33595.1	chr4	132565264	132565464	+	1	NA	NA	NA	1297	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.015000	0.537313	
mm_30709.1	chr4	12113261	12113461	+	1	NA	NA	NA	23991	NM_198957	77604	Mm.474129	NM_198957	ENSMUSG00000052137	Rbm12b2	AV299215|C430048L16Rik|Rbm12bb	RNA binding motif protein 12 B2	protein-coding	0.045000	0.671642	66(GGGTATAAATGG,-,0.00)
mm_51701.1	chr6	86612523	86612723	+	1	NA	NA	NA	-15551	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.020000	0.492537	
mm_31156.1	chr4	43442230	43442430	+	1	NA	NA	NA	53	NM_011571	21754	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.095000	0.666667	
mm_148372.1	chr18	88952696	88952896	-	1	NA	NA	NA	-18994	NM_175542	246102	Mm.772	NM_175542	ENSMUSG00000023066	Rttn	4921538A15Rik|AI666264|C530033I08Rik|D230040K24	rotatin	protein-coding	0.005000	0.427861	
mm_95110.1	chr11	34073447	34073647	+	1	NA	NA	NA	26346	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.030000	0.532338	
mm_169811.1	chr16	19160891	19161091	-	1	NA	NA	NA	125750	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.040000	0.552239	
mm_158708.1	chrX	162415154	162415354	-	1	NA	NA	NA	228404	NM_001290633	194590	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	0.000000	0.447761	
mm_133527.1	chr16	90934941	90935141	+	1	NA	NA	NA	-192	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.085000	0.621891	
mm_153922.1	chr19	47314653	47314853	-	1	NA	NA	NA	-41164	NR_105961	102466782		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.035000	0.582090	-79(TTCTATTTAAGG,-,0.00)
mm_90886.1	chr10	9996205	9996405	-	1	NA	NA	NA	-95265	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0.015000	0.452736	
mm_128714.1	chr15	63990520	63990720	-	1	NA	NA	NA	69828	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.000000	0.378109	
mm_156198.1	chrX	134308074	134308274	+	1	NA	NA	NA	90	NM_001305631	102920	Mm.34903	NM_145924	ENSMUSG00000031262	Cenpi	CENP-I|Fshprh1	centromere protein I	protein-coding	0.080000	0.626866	
mm_90214.1	chr10	120899799	120899999	+	1	NA	NA	NA	-928	NM_177092	320183	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	0.020000	0.368159	
mm_117601.1	chr13	90088976	90089176	-	1	NA	NA	NA	532	NM_028012	108138	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	0.035000	0.532338	
mm_25696.1	chr3	122268197	122268397	+	1	NA	NA	NA	-6117	NM_153806	99480	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	0.000000	0.373134	
mm_42186.1	chr5	112269214	112269414	+	1	NA	NA	NA	-7377	NM_001326590	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.055000	0.616915	
mm_24855.1	chr3	95876956	95877156	+	1	NA	NA	NA	5172	NM_001033302	229599	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	0.010000	0.378109	
mm_110522.1	chr12	54862986	54863186	-	1	NA	NA	NA	-209	NM_007688	12632	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	0.105000	0.641791	
mm_94829.1	chr11	23306795	23306995	+	1	NA	NA	NA	0	NM_001190401	17847	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.145000	0.810945	
mm_36315.1	chr4	70243577	70243777	-	1	NA	NA	NA	166758	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.010000	0.383085	
mm_40469.1	chr5	53809521	53809721	+	1	NA	NA	NA	-6	NM_144517	67249	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	0.085000	0.641791	
mm_125075.1	chr15	25984287	25984487	+	1	NA	NA	NA	21	NM_144523	52521	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.055000	0.557214	
mm_66823.1	chr7	48691667	48691867	-	1	NA	NA	NA	-47966	NM_207537	404238	Mm.377926	NM_207537	ENSMUSG00000070546	Mrgprb3	MrgB3	MAS-related GPR, member B3	protein-coding	0.005000	0.432836	
mm_23905.1	chr3	83031984	83032184	+	1	NA	NA	NA	5931	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.030000	0.482587	
mm_59359.1	chr7	25687031	25687231	+	1	NA	NA	NA	129	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.100000	0.771144	
mm_78748.1	chr9	42142010	42142210	+	1	NA	NA	NA	-17821	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.010000	0.487562	
mm_157783.1	chrX	73824260	73824460	-	1	NA	NA	NA	609	NM_001029868	245469	Mm.103782	NM_001029868	ENSMUSG00000002006	Pdzd4	B230341P03|D130075J17Rik|Kiaa1444-hp|LU1|PDZRN4L|Pdzk4|Pdzrnk4l|Xlu	PDZ domain containing 4	protein-coding	0.055000	0.636816	
mm_79023.1	chr9	45930262	45930462	+	1	NA	NA	NA	5696	NM_011526	21345	Mm.283283	NM_011526	ENSMUSG00000032085	Tagln	Sm22|Sm22a|Ws310	transgelin	protein-coding	0.020000	0.562189	
mm_135544.1	chr16	49792422	49792622	-	1	NA	NA	NA	-63132	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.005000	0.512438	
mm_111575.1	chr12	101818848	101819048	-	1	NA	NA	NA	171	NM_011812	23876	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	0.040000	0.522388	
mm_73409.1	chr8	106011409	106011609	+	1	NA	NA	NA	-23	NM_028038	71986	Mm.307515	NM_028038	ENSMUSG00000045538	Ddx28	2410004K13Rik|AI449652|Mddx28	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	protein-coding	0.080000	0.611940	
mm_108320.1	chr12	79750407	79750607	+	1	NA	NA	NA	174226	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.015000	0.477612	
mm_101905.1	chr11	49204170	49204370	-	1	NA	NA	NA	770	NM_009562	22720	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0.035000	0.502488	
mm_69211.1	chr7	127470781	127470981	-	1	NA	NA	NA	-733	NM_145589	233895	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.050000	0.462687	
mm_103692.1	chr11	79515475	79515675	-	1	NA	NA	NA	8187	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.015000	0.457711	
mm_162318.1	chr1	38703969	38704169	+	1	NA	NA	NA	-76825	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.020000	0.452736	
mm_39849.1	chr5	30913371	30913571	+	1	NA	NA	NA	-315	NM_133918	100952	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	0.005000	0.597015	
mm_47988.1	chr5	135934526	135934726	-	1	NA	NA	NA	15	NM_018871	22628	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.135000	0.711443	
mm_27915.1	chr3	79531642	79531842	-	1	NA	NA	NA	35937	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.015000	0.517413	
mm_102116.1	chr11	53300110	53300310	-	1	NA	NA	NA	269	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.135000	0.746269	
mm_113115.1	chr13	24487197	24487397	+	1	NA	NA	NA	72175	NM_001284520	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.015000	0.502488	
mm_82119.1	chr9	123462053	123462253	+	1	NA	NA	NA	-16548	NM_013860	29806	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.030000	0.502488	
mm_56325.1	chr6	92481274	92481474	-	1	NA	NA	NA	18	NM_001134460	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.040000	0.532338	
mm_74514.1	chr8	8689979	8690179	-	1	NA	NA	NA	83	NR_106114	102465762		NR_106114	ENSMUSG00000098917	Mir7654	Gm27748|mmu-mir-7654	microRNA 7654	ncRNA	0.170000	0.701493	
mm_33881.1	chr4	136172610	136172810	+	1	NA	NA	NA	436	NM_177733	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.160000	0.800995	
mm_82609.1	chr9	21592726	21592926	-	1	NA	NA	NA	5	NM_001205158	74766	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	0.075000	0.552239	
mm_25343.1	chr3	106721826	106722026	+	1	NA	NA	NA	244	NM_001286685	321000	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	0.065000	0.616915	
mm_89968.1	chr10	111473864	111474064	+	1	NA	NA	NA	772	NM_015781	53605	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.035000	0.442786	
mm_47700.1	chr5	129873171	129873371	-	1	NA	NA	NA	5812	NM_011079	18682	Mm.3159	NM_011079	ENSMUSG00000025537	Phkg1	Phkg	phosphorylase kinase gamma 1	protein-coding	0.020000	0.522388	
mm_1115.1	chr1	59875008	59875208	+	1	NA	NA	NA	-37898	NM_001037725	72750	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0.000000	0.432836	
mm_28414.1	chr3	90389804	90390004	-	1	NA	NA	NA	34	NM_001316688	26568	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	0.085000	0.671642	
mm_78407.1	chr9	29442300	29442500	+	1	NA	NA	NA	520729	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.010000	0.452736	
mm_142043.1	chr17	35425265	35425465	-	1	NA	NA	NA	488	NM_207648	110557	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	0.065000	0.626866	
mm_32914.1	chr4	119136159	119136359	+	1	NA	NA	NA	27514	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.050000	0.542289	
mm_89061.1	chr10	82887627	82887827	+	1	NA	NA	NA	21101	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.010000	0.422886	
mm_7930.1	chr1	133906958	133907158	-	1	NA	NA	NA	115	NM_054076	269120	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	0.005000	0.527363	
mm_117979.1	chr13	100103989	100104189	-	1	NA	NA	NA	-19	NM_001081061	544971	Mm.288546	NM_001081061	ENSMUSG00000049658	Bdp1	AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding	0.105000	0.601990	
mm_71231.1	chr8	40905766	40905966	+	1	NA	NA	NA	-20367	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.005000	0.442786	
mm_70691.1	chr8	15018370	15018570	+	1	NA	NA	NA	7445	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.025000	0.537313	
mm_50169.1	chr6	41554721	41554921	+	1	NA	NA	NA	33045	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.477612	
mm_36603.1	chr4	88938328	88938528	-	1	NA	NA	NA	3614	NR_132734	106557447	Mm.484668	NR_132734		LOC106557447	-	uncharacterized LOC106557447	ncRNA	0.175000	0.800995	
mm_170461.1	chr1	89216531	89216731	+	1	NA	NA	NA	146169	NM_133816	98402	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.035000	0.572139	
mm_167170.1	chr7	137789671	137789871	+	1	NA	NA	NA	352097	NR_033611	620016	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	OTTMUSG00000007920	glutaredoxin 3 pseudogene	pseudo	0.005000	0.457711	-5(CCATTTATAGCA,+,0.00)
mm_56371.1	chr6	93913599	93913799	-	1	NA	NA	NA	-9	NM_001083320	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.035000	0.567164	64(GCTTAAATACAG,+,0.00)
mm_42763.1	chr5	121204737	121204937	+	1	NA	NA	NA	336	NM_011290	19988	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	0.085000	0.656716	
mm_35969.1	chr4	53149435	53149635	-	1	NA	NA	NA	10360	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.020000	0.522388	
mm_95400.1	chr11	49722764	49722964	+	1	NA	NA	NA	-10142	NM_212484	104625	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0.020000	0.407960	
mm_26009.1	chr3	135298837	135299037	+	1	NA	NA	NA	-8763	NM_178877	97086	Mm.441764	NM_178877	ENSMUSG00000037994	Slc9b2	C80638|NHA2|NHE10|Nhedc2|nha-oc|nhaoc	solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2	protein-coding	0.005000	0.427861	
mm_38443.1	chr4	139967024	139967224	-	1	NA	NA	NA	496	NR_035519	100316727		NR_035519	ENSMUSG00000089294	Mir2139	mmu-mir-2139	microRNA 2139	ncRNA	0.010000	0.597015	
mm_106227.1	chr11	117265893	117266093	-	1	NA	NA	NA	-253	NM_001113487	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.055000	0.601990	3(TCGCATATAAGC,-,0.00)
mm_120482.1	chr14	65975668	65975868	+	1	NA	NA	NA	7285	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.040000	0.567164	
mm_54687.1	chr6	39420350	39420550	-	1	NA	NA	NA	-81	NM_018810	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.100000	0.686567	-87(GCCCCTTTAGGG,-,0.00),-85(CCCTTTAGGGCG,+,0.00)
mm_85210.1	chr9	96787835	96788035	-	1	NA	NA	NA	22373	NR_102296	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	0.010000	0.432836	
mm_74235.1	chr8	124357138	124357338	+	1	NA	NA	NA	76698	NM_171824	209966	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	0.020000	0.353234	
mm_40660.1	chr5	65199613	65199813	+	1	NA	NA	NA	17	NM_153391	213081	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	0.080000	0.587065	
mm_25071.1	chr3	99352582	99352782	+	1	NA	NA	NA	98922	NM_009323	21384	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0.015000	0.457711	
mm_73822.1	chr8	117456807	117457007	+	1	NA	NA	NA	-2358	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.030000	0.532338	
mm_52118.1	chr6	97925564	97925764	+	1	NA	NA	NA	-4153	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.293532	
mm_141935.1	chr17	35046449	35046649	-	1	NA	NA	NA	73	NM_013600	17687	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	0.070000	0.671642	
mm_62395.1	chr7	101108384	101108584	+	1	NA	NA	NA	-291	NM_001146010	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.115000	0.756219	
mm_94011.1	chr10	127621150	127621350	-	1	NA	NA	NA	-102	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.050000	0.686567	
mm_52970.1	chr6	123229755	123229955	+	1	NA	NA	NA	12	NM_001190321	56620	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	0.005000	0.437811	
mm_48914.1	chr6	4003886	4004086	+	1	NA	NA	NA	-1	NM_025331	66066	Mm.25547	NM_025331	ENSMUSG00000032766	Gng11	0610037B21Rik	guanine nucleotide binding protein (G protein), gamma 11	protein-coding	0.020000	0.606965	
mm_37023.1	chr4	114908803	114909003	-	1	NA	NA	NA	-5	NM_008593	17301	Mm.7997	NM_008593	ENSMUSG00000055210	Foxd2	AI426778|Mf2	forkhead box D2	protein-coding	0.130000	0.776119	
mm_88309.1	chr10	75406914	75407114	+	1	NA	NA	NA	103	NM_133995	103149	Mm.441195	NM_133995	ENSMUSG00000033427	Upb1	AI195023	ureidopropionase, beta	protein-coding	0.030000	0.626866	
mm_72229.1	chr8	74872616	74872816	+	1	NA	NA	NA	-458	NM_027837	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	0.000000	0.512438	
mm_129592.1	chr15	79804133	79804333	-	1	NA	NA	NA	476	NM_030689	73340	Mm.38438	NM_030689	ENSMUSG00000022421	Nptxr	1200009K17Rik|1700036C17Rik|5730406O18Rik|AI452369|AI785356|D15Bwg0580e|NPR|Npcd	neuronal pentraxin receptor	protein-coding	0.150000	0.756219	
mm_121739.1	chr14	18331955	18332155	-	1	NA	NA	NA	-211	NM_009455	22194	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	0.040000	0.597015	
mm_73431.1	chr8	106135848	106136048	+	1	NA	NA	NA	548	NR_040346	69771	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.065000	0.636816	
mm_93287.1	chr10	96263615	96263815	-	1	NA	NA	NA	37508	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.020000	0.502488	
mm_79653.1	chr9	59617240	59617440	+	1	NA	NA	NA	56	NR_038074	67287	Mm.439943	NM_029922	ENSMUSG00000025237	Parp6	1700119G14Rik|2310028P13Rik|3110038K10Rik|ARTD17|C030013N01Rik|PARP-6	poly (ADP-ribose) polymerase family, member 6	protein-coding	0.165000	0.800995	
mm_138689.1	chr17	35969962	35970162	+	1	NA	NA	NA	-312	NM_013854	224742	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	0.030000	0.502488	
mm_111773.1	chr12	104044258	104044458	-	1	NA	NA	NA	85	NM_026535	68054	Mm.20286	NM_026535	ENSMUSG00000041567	Serpina12	4632419J12Rik	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12	protein-coding	0.015000	0.572139	
mm_137021.1	chr17	17865361	17865561	+	1	NA	NA	NA	-10273	NM_008215	15116	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase1	protein-coding	0.005000	0.442786	
mm_61153.1	chr7	58658266	58658466	+	1	NA	NA	NA	164	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.135000	0.751244	
mm_141189.1	chr17	26939395	26939595	-	1	NA	NA	NA	-37	NR_104458	67675	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	0.095000	0.681592	
mm_96316.1	chr11	63989596	63989796	+	1	NA	NA	NA	25470	NR_131111	78883	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	0.000000	0.328358	
mm_47155.1	chr5	120629913	120630113	-	1	NA	NA	NA	4222	NM_001195094	546886	Mm.464847	NM_001195094	ENSMUSG00000094282	Cfap73	Ccdc42b|Gm5988	cilia and flagella associated protein 73	protein-coding	0.050000	0.611940	
mm_15032.1	chr2	152736153	152736353	+	1	NA	NA	NA	2	NM_010495	15901	Mm.444	NM_010495	ENSMUSG00000042745	Id1	AI323524|D2Wsu140e|Idb1|bHLHb24	inhibitor of DNA binding 1	protein-coding	0.035000	0.532338	-36(GCCCTTATAAAA,-,0.00),-34(CCTTATAAAAGA,+,0.00),-34(CCTTATAAAAGA,-,0.00)
mm_20998.1	chr2	152332464	152332664	-	1	NA	NA	NA	75	NM_019705	24105	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0.050000	0.656716	
mm_45456.1	chr5	67776027	67776227	-	1	NA	NA	NA	71304	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.015000	0.368159	55(CTGTCTAAAAGG,-,0.00)
mm_24747.1	chr3	95318710	95318910	+	1	NA	NA	NA	-20	NM_001320492	76893	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.020000	0.587065	
mm_71004.1	chr8	31111694	31111894	+	1	NA	NA	NA	-52	NM_175136	68867	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	0.060000	0.636816	
mm_85892.1	chr9	111055159	111055359	-	1	NA	NA	NA	1985	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.020000	0.328358	
mm_19560.1	chr2	98667173	98667373	-	1	NA	NA	NA	1199616	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.025000	0.343284	
mm_150918.1	chr19	46075910	46076110	+	1	NA	NA	NA	163	NM_001039351	70769	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	0.130000	0.631841	
mm_119859.1	chr14	54467402	54467602	+	1	NA	NA	NA	3355	NM_022993	65107	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	0.000000	0.547264	
mm_136873.1	chr17	12917993	12918193	+	1	NA	NA	NA	1764	NM_013686	21454	Mm.229342	NM_013686	ENSMUSG00000068039	Tcp1	AI528772|CCT|Cct1|Ccta|TRic|Tcp-1|Tp63|c-cpn|p63	t-complex protein 1	protein-coding	0.015000	0.467662	
mm_86124.1	chr9	116175081	116175281	-	1	NA	NA	NA	182	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.140000	0.766169	
mm_125643.1	chr15	62181653	62181853	+	1	NA	NA	NA	37698	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.000000	0.497512	
mm_111740.1	chr12	103865679	103865879	-	1	NA	NA	NA	-2160	NM_009243	20700	Mm.439692	NM_009243	ENSMUSG00000066366	Serpina1a	Aat-2|Aat2|Dom1|PI1|Spi1-1|Spi1-3	serine (or cysteine) peptidase inhibitor, clade A, member 1A	protein-coding	0.005000	0.522388	
mm_26665.1	chr3	154711002	154711202	+	1	NA	NA	NA	-31	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.005000	0.517413	
mm_21862.1	chr2	165885423	165885623	-	1	NA	NA	NA	-685	NM_001252587	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.020000	0.532338	
mm_16463.1	chr2	180604022	180604222	+	1	NA	NA	NA	5900	NM_009936	12841	Mm.141312	NM_009936	ENSMUSG00000027570	Col9a3	AV006866	collagen, type IX, alpha 3	protein-coding	0.000000	0.462687	
mm_119060.1	chr14	30716780	30716980	+	1	NA	NA	NA	1265	NM_001166532	54650	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.040000	0.507463	
mm_22782.1	chr3	21962638	21962838	+	1	NA	NA	NA	-113914	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.020000	0.447761	-15(GCTTTTATACGT,+,0.00)
mm_95197.1	chr11	43155683	43155883	+	1	NA	NA	NA	5906	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding	0.005000	0.348259	
mm_81688.1	chr9	111125243	111125443	+	1	NA	NA	NA	7232	NM_001164838	71268	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.020000	0.348259	
mm_82059.1	chr9	122686667	122686867	+	1	NA	NA	NA	3891	NR_029819	387156		NR_029819	ENSMUSG00000065414	Mir138-1	Mirn138|Mirn138-1|mir-138-1	microRNA 138-1	ncRNA	0.010000	0.492537	
mm_65834.1	chr7	29180570	29180770	-	1	NA	NA	NA	3	NM_026545	57296	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	0.090000	0.631841	
mm_34479.1	chr4	148448458	148448658	+	1	NA	NA	NA	-24	NM_020009	56717	Mm.21158	NM_020009	ENSMUSG00000028991	Mtor	2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat	mechanistic target of rapamycin (serine/threonine kinase)	protein-coding	0.090000	0.651741	
mm_13982.1	chr2	121506624	121506824	+	1	NA	NA	NA	1	NM_001290986	241627	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	0.060000	0.552239	12(TCGCTTAAAGGG,-,0.00)
mm_39501.1	chr5	21186283	21186483	+	1	NA	NA	NA	116	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.075000	0.656716	
mm_55342.1	chr6	56569015	56569215	-	1	NA	NA	NA	135584	NM_025520	66373	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.050000	0.567164	
mm_171614.1	chr4	150281442	150281642	+	1	NA	NA	NA	-374	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.130000	0.716418	
mm_98407.1	chr11	94339750	94339950	+	1	NA	NA	NA	11849	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.025000	0.572139	
mm_111808.1	chr12	105222617	105222817	-	1	NA	NA	NA	20	NM_001309485	21432	Mm.18154	NM_009337	ENSMUSG00000041359	Tcl1	Tcl1a	T cell lymphoma breakpoint 1	protein-coding	0.050000	0.577114	
mm_65128.1	chr7	19458729	19458929	-	1	NA	NA	NA	-335	NM_172279	232944	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.110000	0.791045	-81(CCTTTAAGGGCC,+,0.00)
mm_125776.1	chr15	74636757	74636957	+	1	NA	NA	NA	-539	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.020000	0.522388	
mm_171029.1	chr2	88513430	88513630	+	1	NA	NA	NA	-11971	NM_146530	258523	Mm.377551	NM_146530	ENSMUSG00000082882	Olfr1186	MOR230-5	olfactory receptor 1186	protein-coding	0.025000	0.527363	
mm_6027.1	chr1	59316017	59316217	-	1	NA	NA	NA	59210	NM_001033373	271697	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	0.025000	0.442786	
mm_55316.1	chr6	55132866	55133066	-	1	NA	NA	NA	50	NM_009953	12922	Mm.236081	NM_009953	ENSMUSG00000003476	Crhr2	CRF-R2|CRFR2alpha|CRFR2beta|Crfr2	corticotropin releasing hormone receptor 2	protein-coding	0.030000	0.621891	
mm_24725.1	chr3	95282427	95282627	+	1	NA	NA	NA	-408	NM_133858	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.025000	0.507463	
mm_131296.1	chr16	11399530	11399730	+	1	NA	NA	NA	-6018	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.005000	0.487562	
mm_46254.1	chr5	99252747	99252947	-	1	NA	NA	NA	80	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.100000	0.681592	
mm_146499.1	chr18	3281635	3281835	-	1	NA	NA	NA	12	NM_001110854	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.010000	0.388060	
mm_94903.1	chr11	29197561	29197761	+	1	NA	NA	NA	24754	NM_134034	104570	Mm.276386	NM_134034	ENSMUSG00000020463	Smek2	AW011752|AW557776|Ppp4r3b|mKIAA1387	SMEK homolog 2, suppressor of mek1 (Dictyostelium)	protein-coding	0.005000	0.328358	
mm_76789.1	chr8	102739136	102739336	-	1	NA	NA	NA	45875	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.015000	0.552239	
mm_83318.1	chr9	44144438	44144638	-	1	NA	NA	NA	9880	NM_023061	84004	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.015000	0.542289	
mm_10994.1	chr2	26330334	26330534	+	1	NA	NA	NA	10664	NM_001199147	67839	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	0.015000	0.616915	
mm_103578.1	chr11	78160820	78161020	-	1	NA	NA	NA	4630	NM_009423	22032	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0.010000	0.582090	
mm_103763.1	chr11	81153612	81153812	-	1	NA	NA	NA	-809	NM_007384	11418	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	0.100000	0.686567	
mm_62055.1	chr7	92447417	92447617	+	1	NA	NA	NA	-113632	NM_025515	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.010000	0.497512	
mm_55246.1	chr6	52640245	52640445	-	1	NA	NA	NA	-45	NM_145567	58875	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	0.125000	0.711443	
mm_49918.1	chr6	39126532	39126732	+	1	NA	NA	NA	8159	NR_045813	75379	Mm.348014	NR_045813	ENSMUSG00000073144	4930599N23Rik	-	RIKEN cDNA 4930599N23 gene	ncRNA	0.005000	0.442786	
mm_148056.1	chr18	72144743	72144943	-	1	NA	NA	NA	206226	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.000000	0.447761	-74(CCTTTTAGACAG,+,0.00)
mm_107596.1	chr12	49381968	49382168	+	1	NA	NA	NA	-815	NM_001160112	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.020000	0.522388	
mm_50782.1	chr6	53697968	53698168	+	1	NA	NA	NA	122757	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.030000	0.383085	
mm_36655.1	chr4	94650042	94650242	-	1	NA	NA	NA	2	NM_175305	100061	Mm.26760	NM_175305	ENSMUSG00000049799	Lrrc19	9130022A01Rik|AI314124|AL022954|AW261791	leucine rich repeat containing 19	protein-coding	0.010000	0.378109	
mm_98932.1	chr11	98356619	98356819	+	1	NA	NA	NA	1564	NR_045477	69338	Mm.398308	NR_045477	ENSMUSG00000085944	1700003D09Rik	-	RIKEN cDNA 1700003D09 gene	ncRNA	0.015000	0.457711	
mm_73939.1	chr8	120101275	120101475	+	1	NA	NA	NA	97	NM_133967	102193	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.125000	0.691542	
mm_75299.1	chr8	41061103	41061303	-	1	NA	NA	NA	-6407	NM_001005864	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.005000	0.393035	
mm_172079.1	chr6	145932737	145932937	-	1	NA	NA	NA	964	NM_001310837	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.065000	0.482587	72(AACTTTAAATGG,-,0.00)
mm_171208.1	chr3	5860300	5860500	+	1	NA	NA	NA	-284152	NM_001163305	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.070000	0.457711	
mm_35627.1	chr4	43478688	43478888	-	1	NA	NA	NA	4921	NM_019436	54390	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	0.010000	0.437811	
mm_513.1	chr1	37400270	37400470	+	1	NA	NA	NA	29733	NM_198006	76178	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	0.000000	0.383085	-98(CTCTTTAGAGGC,+,0.00)
mm_59792.1	chr7	28984630	28984830	+	1	NA	NA	NA	1876	NM_008279	26411	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.005000	0.333333	
mm_85431.1	chr9	103692699	103692899	-	1	NA	NA	NA	69038	NM_178638	81907	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding	0.020000	0.557214	
mm_133137.1	chr16	66852534	66852734	+	1	NA	NA	NA	195516	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0.005000	0.512438	
mm_166748.1	chr6	125191576	125191776	-	1	NA	NA	NA	-90	NM_146171	68298	Mm.257590	NM_146171	ENSMUSG00000038252	Ncapd2	2810406C15Rik|2810465G24Rik|CAP-D2|CNAP1|mKIAA0159	non-SMC condensin I complex, subunit D2	protein-coding	0.100000	0.646766	
mm_18052.1	chr2	39196463	39196663	-	1	NA	NA	NA	-5833	NM_178778	320271	Mm.204836	NM_178778	ENSMUSG00000035236	Scai	9330112M16|A930041I02Rik|AI662729	suppressor of cancer cell invasion	protein-coding	0.000000	0.228856	
mm_53990.1	chr6	6871528	6871728	-	1	NA	NA	NA	-2095	NR_015388	320038	Mm.94021	NR_015388		Dlx6os1	A230055N17Rik|Dlx6as1|Evf-1|Evf-2|Evf1|Evf1/2|Evf2|Shhrs|mEvf-1	distal-less homeobox 6, opposite strand 1	ncRNA	0.015000	0.437811	
mm_21154.1	chr2	154548669	154548869	-	1	NA	NA	NA	-135	NM_029305	75480	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0.005000	0.517413	
mm_19451.1	chr2	92001798	92001998	-	1	NA	NA	NA	22272	NM_011957	26427	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.015000	0.577114	
mm_150542.1	chr19	39310579	39310779	+	1	NA	NA	NA	23594	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.010000	0.338308	
mm_54214.1	chr6	25689785	25689985	-	1	NA	NA	NA	95	NM_010338	14763	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	0.070000	0.666667	
mm_15710.1	chr2	164017575	164017775	+	1	NA	NA	NA	-7549	NM_001114079	381404	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	0.015000	0.472637	
mm_107165.1	chr12	24681831	24682031	+	1	NA	NA	NA	-136	NM_001161807	12879	Mm.52265	NM_138686	ENSMUSG00000062563	Cys1	2900006B19Rik|AV218859|Ccap|ck|cpk	cystin 1	protein-coding	0.040000	0.601990	
mm_132144.1	chr16	32078130	32078330	+	1	NA	NA	NA	1112	NM_177326	224105	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 protein (Cdc42/Rac)-activated kinase 2	protein-coding	0.040000	0.422886	-84(TACTTTATAAGA,-,0.00),37(TTTTTTAAAAGG,-,0.00)
mm_14256.1	chr2	128159190	128159390	+	1	NA	NA	NA	31715	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.045000	0.582090	
mm_89915.1	chr10	111178335	111178535	+	1	NA	NA	NA	13633	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.005000	0.388060	
mm_69100.1	chr7	127019996	127020196	-	1	NA	NA	NA	1115	NM_001102563	69017	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.005000	0.601990	
mm_149538.1	chr19	12465767	12465967	+	1	NA	NA	NA	5088	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.015000	0.477612	74(CCCTTTATACAA,+,0.00)
mm_88768.1	chr10	80335830	80336030	+	1	NA	NA	NA	5785	NM_139292	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.025000	0.597015	
mm_167217.1	chr8	9506170	9506370	+	1	NA	NA	NA	264753	NM_173446	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding	0.020000	0.447761	
mm_20670.1	chr2	132247534	132247734	-	1	NA	NA	NA	154	NM_027478	70612	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.120000	0.701493	
mm_52247.1	chr6	106332345	106332545	+	1	NA	NA	NA	213680	NM_001109751	269784	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding	0.005000	0.447761	
mm_163457.1	chr12	98385597	98385797	-	1	NA	NA	NA	117062	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.005000	0.313433	
mm_44785.1	chr5	32135533	32135733	-	1	NA	NA	NA	-839	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.140000	0.771144	
mm_44865.1	chr5	34336725	34336925	-	1	NA	NA	NA	-107	NM_001304270	19822	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0.095000	0.631841	
mm_150148.1	chr19	31914232	31914432	+	1	NA	NA	NA	45571	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.010000	0.432836	
mm_113065.1	chr13	23746654	23746854	+	1	NA	NA	NA	20	NM_175664	319178	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding	0.005000	0.412935	
mm_57987.1	chr6	136171419	136171619	-	1	NA	NA	NA	1992	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.020000	0.402985	
mm_125860.1	chr15	75216273	75216473	+	1	NA	NA	NA	-52048	NM_008530	17071	Mm.377095	NM_008530	ENSMUSG00000022583	Ly6f	-	lymphocyte antigen 6 complex, locus F	protein-coding	0.005000	0.532338	
mm_50300.1	chr6	47545606	47545806	+	1	NA	NA	NA	49324	NM_007971	14056	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.005000	0.442786	
mm_170007.1	chr17	16676681	16676881	-	1	NA	NA	NA	-387322	NM_001005358	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	0.030000	0.502488	-39(AGCTCTAAGAGG,-,0.00)
mm_7830.1	chr1	132116845	132117045	-	1	NA	NA	NA	22740	NM_008795	18557	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.040000	0.592040	
mm_83277.1	chr9	43071209	43071409	-	1	NA	NA	NA	34409	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0.010000	0.512438	
mm_113936.1	chr13	49653232	49653432	+	1	NA	NA	NA	254	NR_073167	70930	Mm.258915	NM_001081350	ENSMUSG00000021392	Nol8	4921532D18Rik|5730412B09Rik	nucleolar protein 8	protein-coding	0.050000	0.517413	
mm_53888.1	chr6	3376838	3377038	-	1	NA	NA	NA	22633	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.005000	0.368159	
mm_134459.1	chr16	18413360	18413560	-	1	NA	NA	NA	34	NM_001111063	12846	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.010000	0.517413	-33(GGGTATATAAAG,-,0.00),-31(GTATATAAAGGC,+,0.00),-31(GTATATAAAGGC,-,0.00)
mm_163158.1	chr11	83850785	83850985	+	1	NA	NA	NA	16	NM_009330	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.015000	0.497512	-47(TCTTATATGGCC,+,0.00)
mm_137536.1	chr17	27556507	27556707	+	1	NA	NA	NA	3	NM_001166537	15361	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0.095000	0.696517	-77(CCTTTTAAATCC,+,0.00),12(CTCTTTTTAAGC,-,0.00),14(CTTTTTAAGCTC,+,0.00)
mm_831.1	chr1	51289266	51289466	+	1	NA	NA	NA	240	NM_138741	20324	Mm.398690	NM_138741	ENSMUSG00000045954	Sdpr	-	serum deprivation response	protein-coding	0.010000	0.537313	
mm_19319.1	chr2	90563096	90563296	-	1	NA	NA	NA	17451	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.005000	0.417910	
mm_110688.1	chr12	69159021	69159221	-	1	NA	NA	NA	65	NM_009093	20090	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0.090000	0.557214	
mm_111500.1	chr12	99392950	99393150	-	1	NA	NA	NA	57024	NM_183186	71375	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.140000	0.716418	
mm_28110.1	chr3	86548490	86548690	-	1	NA	NA	NA	-307	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.020000	0.492537	
mm_110069.1	chr12	21417051	21417251	-	1	NA	NA	NA	285	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.140000	0.706468	
mm_131619.1	chr16	19760731	19760931	+	1	NA	NA	NA	597	NM_001159407	108105	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	0.050000	0.557214	
mm_131027.1	chr16	3723494	3723694	+	1	NA	NA	NA	-5470	NM_001161791	54483	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.010000	0.402985	
mm_93946.1	chr10	127230655	127230855	-	1	NA	NA	NA	-19133	NM_054097	117150	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	0.030000	0.532338	-84(CCTTTAAAAATG,+,0.00)
mm_18258.1	chr2	52277422	52277622	-	1	NA	NA	NA	-13480	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.015000	0.462687	
mm_148879.1	chr19	6498070	6498270	+	1	NA	NA	NA	44900	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.105000	0.721393	
mm_27297.1	chr3	46445545	46445745	-	1	NA	NA	NA	2296	NM_001101479	241989	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding	0.000000	0.253731	
mm_67230.1	chr7	74555089	74555289	-	1	NA	NA	NA	-409	NM_001038643	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.030000	0.592040	
mm_39827.1	chr5	30798498	30798698	+	1	NA	NA	NA	-16043	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.020000	0.567164	
mm_87537.1	chr10	53580328	53580528	+	1	NA	NA	NA	-16533	NM_025541	66403	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0.010000	0.582090	-34(CACTATAAAAGA,-,0.00)
mm_87765.1	chr10	60292748	60292948	+	1	NA	NA	NA	8387	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.005000	0.422886	
mm_106668.1	chr11	121519684	121519884	-	1	NA	NA	NA	-442	NM_178763	319530	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.015000	0.487562	
mm_127691.1	chr15	102982008	102982208	+	1	NA	NA	NA	5076	NM_008272	15427	Mm.4765	NM_008272	ENSMUSG00000036139	Hoxc9	Hox-3.2	homeobox C9	protein-coding	0.145000	0.721393	
mm_44182.1	chr5	151368603	151368803	+	1	NA	NA	NA	28	NR_045699	625175	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0.115000	0.696517	
mm_11629.1	chr2	34775487	34775687	+	1	NA	NA	NA	3497	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.015000	0.442786	
mm_75934.1	chr8	71535380	71535580	-	1	NA	NA	NA	1957	NM_198095	69550	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	0.005000	0.472637	
mm_142760.1	chr17	49113368	49113568	-	1	NA	NA	NA	65	NR_038141	69311	Mm.46140	NR_038141	ENSMUSG00000101012	1700008K24Rik	-	RIKEN cDNA 1700008K24 gene	ncRNA	0.015000	0.527363	
mm_115955.1	chr13	23761078	23761278	-	1	NA	NA	NA	71	NM_178192	326619	Mm.228709	NM_178192	ENSMUSG00000060093	Hist1h4a	-	histone cluster 1, H4a	protein-coding	0.075000	0.557214	-35(AGCTATATAAAG,-,0.00)
mm_72669.1	chr8	84908543	84908743	+	1	NA	NA	NA	19	NM_010062	13423	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	0.085000	0.636816	56(CGGTTTTTAGGG,-,0.00),58(GTTTTTAGGGGA,+,0.00)
mm_63004.1	chr7	120842821	120843021	+	1	NA	NA	NA	90	NM_007908	13631	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.080000	0.721393	
mm_117162.1	chr13	62653112	62653312	-	1	NA	NA	NA	-29030	NM_173381	211378	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	0.025000	0.512438	
mm_147440.1	chr18	46524982	46525182	-	1	NA	NA	NA	889	NM_173423	240263	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.050000	0.502488	
mm_127796.1	chr15	3583335	3583535	-	1	NA	NA	NA	-83	NM_010284	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.090000	0.706468	
mm_144336.1	chr18	14424722	14424922	+	1	NA	NA	NA	192516	NR_045373	74529	Mm.400519	NR_045373		8430422H06Rik	-	RIKEN cDNA 8430422H06 gene	ncRNA	0.030000	0.477612	
mm_1680.1	chr1	74854860	74855060	+	1	NA	NA	NA	-69	NM_009872	12570	Mm.153833	NM_009872	ENSMUSG00000090071	Cdk5r2	B230310J22Rik|p39	cyclin-dependent kinase 5, regulatory subunit 2 (p39)	protein-coding	0.145000	0.805970	
mm_83612.1	chr9	48652382	48652582	-	1	NA	NA	NA	-47359	NM_010924	18113	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0.005000	0.313433	
mm_171193.1	chr3	46140833	46141033	+	1	NA	NA	NA	307008	NM_001101479	241989	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding	0.040000	0.507463	
mm_96091.1	chr11	60417031	60417231	+	1	NA	NA	NA	-14	NM_025757	66771	Mm.29950	NM_025757	ENSMUSG00000018415	Gid4	4933439F18Rik	GID complex subunit 4, VID24 homolog	protein-coding	0.140000	0.681592	
mm_108661.1	chr12	86421690	86421890	+	1	NA	NA	NA	146	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.150000	0.736318	
mm_32274.1	chr4	102741193	102741393	+	1	NA	NA	NA	-18842	NM_001285860	73094	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0.025000	0.537313	
mm_144687.1	chr18	34777755	34777955	+	1	NA	NA	NA	847	NM_001081256	277250	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	0.055000	0.567164	
mm_136874.1	chr17	12990906	12991106	+	1	NA	NA	NA	1253	NM_001113533	60532	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.020000	0.457711	
mm_14802.1	chr2	145886788	145886988	+	1	NA	NA	NA	-16353	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.020000	0.437811	
mm_167428.1	chr8	117074789	117074989	+	1	NA	NA	NA	7560	NM_029686	76645	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.020000	0.462687	
mm_26435.1	chr3	142620595	142620795	+	1	NA	NA	NA	32	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.010000	0.457711	
mm_23210.1	chr3	41564789	41564989	+	1	NA	NA	NA	9	NM_001130186	269424	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.100000	0.701493	81(GCGTTTAAATAG,-,0.00),83(GTTTAAATAGCA,+,0.00)
mm_168786.1	chr12	19044296	19044496	+	1	NA	NA	NA	529886	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.120000	0.731343	
mm_107514.1	chr12	40223494	40223694	+	1	NA	NA	NA	230	NR_045157	629820	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.035000	0.507463	
mm_72744.1	chr8	85087119	85087319	+	1	NA	NA	NA	3950	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.025000	0.532338	
mm_168773.1	chr12	17463985	17464185	-	1	NA	NA	NA	-80788	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.015000	0.462687	
mm_11880.1	chr2	49527232	49527432	+	1	NA	NA	NA	75846	NM_172663	227867	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2 (Drosophila)	protein-coding	0.000000	0.233831	
mm_130375.1	chr15	97824689	97824889	-	1	NA	NA	NA	6978	NM_019572	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.015000	0.442786	
mm_6779.1	chr1	84137393	84137593	-	1	NA	NA	NA	81468	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.308458	
mm_117627.1	chr13	92030803	92031003	-	1	NA	NA	NA	-42861	NM_009027	19418	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0.035000	0.527363	
mm_10148.1	chr2	4300529	4300729	+	1	NA	NA	NA	-100347	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.015000	0.547264	
mm_140583.1	chr17	10212334	10212534	-	1	NA	NA	NA	106927	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.000000	0.268657	
mm_35217.1	chr4	19650335	19650535	-	1	NA	NA	NA	58569	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.010000	0.383085	
mm_103343.1	chr11	74724046	74724246	-	1	NA	NA	NA	238	NM_013625	18472	Mm.397111	NM_013625	ENSMUSG00000020745	Pafah1b1	LIS-1|Lis1|MMS10-U|Mdsh|Ms10u|Pafaha	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	protein-coding	0.100000	0.771144	
mm_16728.1	chr2	7396047	7396247	-	1	NA	NA	NA	51	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.020000	0.512438	
mm_104836.1	chr11	99154976	99155176	-	1	NA	NA	NA	1	NM_001301713	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.000000	0.537313	-34(CAACTTAAAAGG,-,0.00)
mm_45738.1	chr5	86469038	86469238	-	1	NA	NA	NA	-148	NM_001033233	194597	Mm.249106	NM_001033233	ENSMUSG00000072845	Tmprss11a	Gm7	transmembrane protease, serine 11a	protein-coding	0.010000	0.432836	
mm_73732.1	chr8	113638635	113638835	+	1	NA	NA	NA	2936	NM_173015	270096	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	0.085000	0.636816	
mm_94950.1	chr11	29742013	29742213	+	1	NA	NA	NA	23550	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.020000	0.472637	-59(ATCTTTAAAGGG,-,0.00),-58(TCTTTAAAGGGG,+,0.00)
mm_115885.1	chr13	21832096	21832296	-	1	NA	NA	NA	-38	NM_175657	319161	Mm.261664	NM_175657	ENSMUSG00000069305	Hist1h4n	-	histone cluster 1, H4n	protein-coding	0.055000	0.577114	-35(CCCTATAAGAGG,-,0.00)
mm_164173.1	chr15	75704178	75704378	+	1	NA	NA	NA	-10	NM_001163465	14787	Mm.57052	NM_008164	ENSMUSG00000022580	Rhpn1	BB023497|Grbp|Rhophilin|mKIAA1929	rhophilin, Rho GTPase binding protein 1	protein-coding	0.075000	0.636816	
mm_102262.1	chr11	55336449	55336649	-	1	NA	NA	NA	-24292	NM_001029988	245827	Mm.339363	NM_001029988	ENSMUSG00000055333	Fat2	EMI2|Fath2|Gm523|mKIAA0811	FAT atypical cadherin 2	protein-coding	0.015000	0.631841	
mm_36307.1	chr4	68954649	68954849	-	1	NA	NA	NA	-352	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.055000	0.532338	
mm_117186.1	chr13	63540226	63540426	-	1	NA	NA	NA	25409	NM_008957	19206	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes	patched 1	protein-coding	0.005000	0.313433	
mm_133714.1	chr16	93607764	93607964	+	1	NA	NA	NA	27	NM_007620	12408	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	0.070000	0.601990	
mm_14343.1	chr2	129593113	129593313	+	1	NA	NA	NA	44	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.170000	0.796020	
mm_77520.1	chr8	122895823	122896023	-	1	NA	NA	NA	47549	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.045000	0.527363	
mm_99424.1	chr11	102393432	102393632	+	1	NA	NA	NA	129	NM_001252347	51799	Mm.2560	NM_016759	ENSMUSG00000006575	Rundc3a	RPIP-8|Rap2ip|Rpip8	RUN domain containing 3A	protein-coding	0.100000	0.726368	
mm_117804.1	chr13	97482415	97482615	-	1	NA	NA	NA	-186	NR_110430	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.000000	0.517413	-34(TTCCTTAAAAGG,-,0.00),-32(CCTTAAAAGGTA,+,0.00)
mm_46724.1	chr5	110770053	110770253	-	1	NA	NA	NA	564	NM_029337	75560	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	0.150000	0.731343	
mm_108900.1	chr12	100199429	100199629	+	1	NA	NA	NA	94	NM_009790	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.145000	0.686567	
mm_67532.1	chr7	81345006	81345206	-	1	NA	NA	NA	128	NM_009092	20068	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.125000	0.716418	
mm_62634.1	chr7	107652964	107653164	+	1	NA	NA	NA	46220	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.005000	0.512438	
mm_32921.1	chr4	119136781	119136981	+	1	NA	NA	NA	28136	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.040000	0.577114	
mm_96008.1	chr11	59542536	59542736	+	1	NA	NA	NA	-50	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.015000	0.472637	-39(TTCCATTAAAAG,-,0.00),-37(CCATTAAAAGAA,+,0.00)
mm_166604.1	chr6	67534677	67534877	-	1	NA	NA	NA	1045	NM_020047	56753	Mm.439913	NM_020047	ENSMUSG00000051397	Tacstd2	C80403|EGP-1|GA733-1|Ly97|TROP2	tumor-associated calcium signal transducer 2	protein-coding	0.040000	0.547264	
mm_27542.1	chr3	57651597	57651797	-	1	NA	NA	NA	-13	NM_175095	52245	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding	0.075000	0.621891	
mm_129438.1	chr15	78512366	78512566	-	1	NA	NA	NA	17185	NM_001204153	72709	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	0.010000	0.532338	
mm_133725.1	chr16	93777114	93777314	+	1	NA	NA	NA	-54907	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.020000	0.502488	
mm_66418.1	chr7	44531274	44531474	-	1	NA	NA	NA	697	NM_019866	272382	Mm.8012	NM_019866	ENSMUSG00000008193	Spib	Spi-B	Spi-B transcription factor (Spi-1/PU.1 related)	protein-coding	0.020000	0.646766	
mm_5340.1	chr1	24100231	24100431	-	1	NA	NA	NA	10	NM_026604	68187	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	0.115000	0.761194	
mm_80939.1	chr9	102717595	102717795	+	1	NA	NA	NA	-109	NM_019764	56332	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0.095000	0.701493	
mm_146039.1	chr18	69592725	69592925	+	1	NA	NA	NA	247104	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.045000	0.507463	
mm_22510.1	chr3	7613780	7613980	+	1	NA	NA	NA	-120	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.005000	0.378109	
mm_19818.1	chr2	110452654	110452854	-	1	NA	NA	NA	-89761	NM_026271	67606	Mm.291809	NM_026271	ENSMUSG00000074971	Fibin	1110018M03Rik	fin bud initiation factor homolog (zebrafish)	protein-coding	0.010000	0.422886	
mm_124108.1	chr14	79390605	79390805	-	1	NA	NA	NA	-37	NM_025832	66897	Mm.24425	NM_025832	ENSMUSG00000022020	Naa16	1300019C06Rik|Narg1l	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	protein-coding	0.140000	0.761194	
mm_69977.1	chr7	142377278	142377478	-	1	NA	NA	NA	-3632	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.035000	0.577114	
mm_63716.1	chr7	130729972	130730172	+	1	NA	NA	NA	37516	NM_021314	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.010000	0.412935	
mm_54317.1	chr6	30175635	30175835	-	1	NA	NA	NA	-888	NR_038124	100463519	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	0.095000	0.691542	-33(CGCTATAAAGGG,-,0.00)
mm_40130.1	chr5	35041538	35041738	+	1	NA	NA	NA	129	NM_019447	54426	Mm.27369	NM_019447	ENSMUSG00000029102	Hgfac	HGFA	hepatocyte growth factor activator	protein-coding	0.020000	0.656716	
mm_109912.1	chr12	8480121	8480321	-	1	NA	NA	NA	19764	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.025000	0.547264	
mm_64448.1	chr7	142658513	142658713	+	1	NA	NA	NA	191	NM_010514	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.025000	0.542289	
mm_4384.1	chr1	172198563	172198763	+	1	NA	NA	NA	8141	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.010000	0.532338	
mm_113558.1	chr13	38151317	38151517	+	1	NA	NA	NA	123	NM_023842	109620	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding	0.110000	0.721393	
mm_134489.1	chr16	18629866	18630066	-	1	NA	NA	NA	-28	NM_213614	18951	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.180000	0.840796	
mm_54634.1	chr6	38715976	38716176	-	1	NA	NA	NA	53007	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.060000	0.641791	
mm_129542.1	chr15	79378522	79378722	-	1	NA	NA	NA	-3322	NR_035464	100316695		NR_035464	ENSMUSG00000088901	Mir1943	mir-1943|mmu-mir-1943	microRNA 1943	ncRNA	0.040000	0.656716	
mm_155384.1	chrX	71816162	71816362	+	1	NA	NA	NA	182	NM_001290781	67048	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding	0.020000	0.462687	
mm_145266.1	chr18	52693598	52693798	+	1	NA	NA	NA	19	NM_010293	14625	Mm.32242	NM_010293	ENSMUSG00000053624	Gykl1	AI449806|Gk-rs1	glycerol kinase-like 1	protein-coding	0.045000	0.557214	
mm_51884.1	chr6	90601861	90602061	+	1	NA	NA	NA	-2919	NM_027868	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.015000	0.572139	
mm_41267.1	chr5	89083668	89083868	+	1	NA	NA	NA	196508	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.010000	0.507463	
mm_117515.1	chr13	80885507	80885707	-	1	NA	NA	NA	2185	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.075000	0.626866	
mm_62139.1	chr7	97091792	97091992	+	1	NA	NA	NA	10141	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.000000	0.318408	
mm_50091.1	chr6	41524933	41525133	+	1	NA	NA	NA	3257	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.437811	
mm_41403.1	chr5	90786327	90786527	+	1	NA	NA	NA	326	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.020000	0.587065	
mm_32092.1	chr4	98541518	98541718	+	1	NA	NA	NA	-5016	NM_007704	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.000000	0.378109	-43(CTTTTAAGAGGA,+,0.00),4(TAGCTTTAAAGG,-,0.00),6(GCTTTAAAGGTC,+,0.00)
mm_59848.1	chr7	29816007	29816207	+	1	NA	NA	NA	35	NM_001145880	233056	Mm.224766	NM_146185	ENSMUSG00000011427	Zfp790	6330581L23Rik	zinc finger protein 790	protein-coding	0.040000	0.562189	
mm_126032.1	chr15	76818187	76818387	+	1	NA	NA	NA	-117	NM_198420	223666	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0.115000	0.736318	
mm_112664.1	chr13	16027018	16027218	+	1	NA	NA	NA	15267	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.422886	
mm_167924.1	chrX	102908805	102909005	+	1	NA	NA	NA	0	NR_073044	75443	Mm.46161	NR_073044	ENSMUSG00000079476	1700011M02Rik	-	RIKEN cDNA 1700011M02 gene	ncRNA	0.015000	0.592040	
mm_103472.1	chr11	76479651	76479851	-	1	NA	NA	NA	-11286	NM_001291186	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.020000	0.517413	
mm_31883.1	chr4	82065786	82065986	+	1	NA	NA	NA	506	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	0.015000	0.512438	
mm_125473.1	chr15	54410676	54410876	+	1	NA	NA	NA	2	NM_173422	239447	Mm.82400	NM_173422	ENSMUSG00000038591	Colec10	CL-L1	collectin sub-family member 10	protein-coding	0.015000	0.407960	
mm_2811.1	chr1	130874132	130874332	+	1	NA	NA	NA	8455	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.030000	0.487562	
mm_15915.1	chr2	165064100	165064300	+	1	NA	NA	NA	8564	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.010000	0.417910	
mm_123198.1	chr14	59178679	59178879	-	1	NA	NA	NA	-30	NM_001004158	380907	Mm.81009	NM_001004158	ENSMUSG00000053868	Gm5142	EG380907	predicted gene 5142	protein-coding	0.000000	0.522388	51(GGCTCTTTAGGG,-,0.00)
mm_43105.1	chr5	124483473	124483673	+	1	NA	NA	NA	418	NM_029532	76167	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.075000	0.601990	
mm_44680.1	chr5	30073482	30073682	-	1	NA	NA	NA	43	NR_033402	22171	Mm.268395	NM_021288	ENSMUSG00000025747	Tyms	Ts	thymidylate synthase	protein-coding	0.065000	0.631841	
mm_4815.1	chr1	185411399	185411599	+	1	NA	NA	NA	30320	NR_038006	319562	Mm.184335	NM_176943	ENSMUSG00000051295	9630028B13Rik	-	RIKEN cDNA 9630028B13 gene	ncRNA	0.000000	0.333333	
mm_111484.1	chr12	98737505	98737705	-	1	NA	NA	NA	-200	NM_001146199	24000	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0.150000	0.825871	
mm_3306.1	chr1	137898527	137898727	+	1	NA	NA	NA	-67828	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.035000	0.532338	
mm_19800.1	chr2	110305487	110305687	-	1	NA	NA	NA	138	NM_130452	170442	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	0.005000	0.487562	
mm_118091.1	chr13	103774510	103774710	-	1	NA	NA	NA	-10028	NM_172592	218543	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0.170000	0.781095	
mm_78303.1	chr9	22475781	22475981	+	1	NA	NA	NA	166	NM_178415	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.030000	0.562189	
mm_81734.1	chr9	113756638	113756838	+	1	NA	NA	NA	15265	NM_001114347	76499	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.035000	0.517413	
mm_97730.1	chr11	80391839	80392039	+	1	NA	NA	NA	8660	NM_001130171	22680	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0.005000	0.477612	65(TTCTTGAAAAGG,-,0.00)
mm_163443.1	chr12	86242642	86242842	-	1	NA	NA	NA	884	NM_001324488	70373	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	0.020000	0.437811	
mm_30934.1	chr4	32983280	32983480	+	1	NA	NA	NA	382	NM_027491	52187	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	0.095000	0.741294	
mm_128565.1	chr15	56694416	56694616	-	1	NA	NA	NA	30	NM_008216	15117	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding	0.030000	0.552239	-56(TCCTATTAAAAC,-,0.00)
mm_95619.1	chr11	53543624	53543824	+	1	NA	NA	NA	-23645	NM_008443	16568	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	0.010000	0.407960	
mm_170255.1	chr18	11898470	11898670	+	1	NA	NA	NA	-58132	NR_035447	100316686		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0.025000	0.562189	-72(TCTTTAAAACTC,+,0.00),84(CAGTCTAAAAAG,-,0.00)
mm_108416.1	chr12	81959090	81959290	+	1	NA	NA	NA	99160	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	0.005000	0.358209	-5(TTTTTTAAAGCT,+,0.00)
mm_18568.1	chr2	65363845	65364045	-	1	NA	NA	NA	81	NM_177074	320106	Mm.227703	NM_177074	ENSMUSG00000061171	Slc38a11	9330158F14Rik	solute carrier family 38, member 11	protein-coding	0.035000	0.597015	
mm_65912.1	chr7	30194926	30195126	-	1	NA	NA	NA	22	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.090000	0.671642	
mm_18596.1	chr2	66784812	66785012	-	1	NA	NA	NA	-2	NM_009135	20272	Mm.38127	NM_009135	ENSMUSG00000034810	Scn7a	1110034K09Rik|AI642000|NaG|Nav2|Nav2.3|Nax|Scn6a	sodium channel, voltage-gated, type VII, alpha	protein-coding	0.010000	0.552239	
mm_149331.1	chr19	10843219	10843419	+	1	NA	NA	NA	775	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.035000	0.616915	
mm_22077.1	chr2	168749905	168750105	-	1	NA	NA	NA	-7869	NM_001289446	11981	Mm.330819	NM_015731	ENSMUSG00000027546	Atp9a	IIa	ATPase, class II, type 9A	protein-coding	0.015000	0.412935	
mm_130557.1	chr15	99248841	99249041	-	1	NA	NA	NA	-2847	NR_045627	73600	Mm.475134	NR_045627	ENSMUSG00000100599	1700120C14Rik	-	RIKEN cDNA 1700120C14 gene	ncRNA	0.025000	0.572139	
mm_102506.1	chr11	60727154	60727354	-	1	NA	NA	NA	9	NM_022009	14248	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	0.135000	0.766169	
mm_153744.1	chr19	44749519	44749719	-	1	NA	NA	NA	-7775	NM_011037	18504	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0.020000	0.487562	-83(GTCTTTAGAGGC,+,0.00)
mm_128768.1	chr15	66453744	66453944	-	1	NA	NA	NA	47066	NM_019457	54562	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	0.015000	0.318408	-75(GATTCTAAAAGG,-,0.00)
mm_36226.1	chr4	62524747	62524947	-	1	NA	NA	NA	167	NM_021498	59001	Mm.27444	NM_021498	ENSMUSG00000028394	Pole3	1810034K18Rik|YBL1	polymerase (DNA directed), epsilon 3 (p17 subunit)	protein-coding	0.090000	0.616915	
mm_86728.1	chr10	19063676	19063876	+	1	NA	NA	NA	-48366	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.005000	0.393035	
mm_136592.1	chr17	5000452	5000652	+	1	NA	NA	NA	5478	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.010000	0.472637	
mm_136548.1	chr16	97996881	97997081	-	1	NA	NA	NA	-366	NR_130962	245305	Mm.148033	NR_130962		B230307C23Rik	EG245305|OTTMUSG00000028475	RIKEN cDNA B230307C23 gene	ncRNA	0.010000	0.522388	
mm_44148.1	chr5	150259885	150260085	+	1	NA	NA	NA	55	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.030000	0.621891	
mm_40927.1	chr5	76183843	76184043	+	1	NA	NA	NA	63	NM_011626	21982	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0.120000	0.741294	
mm_48974.1	chr6	4754137	4754337	+	1	NA	NA	NA	6931	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.040000	0.626866	
mm_22340.1	chr2	180726664	180726864	-	1	NA	NA	NA	1425	NM_183161	228993	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	0.025000	0.547264	
mm_96564.1	chr11	69025976	69026176	+	1	NA	NA	NA	10165	NM_001013256	68964	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	0.025000	0.522388	
mm_143481.1	chr17	71268478	71268678	-	1	NA	NA	NA	42387	NM_145158	246707	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.005000	0.477612	
mm_169885.1	chr16	43906711	43906911	+	1	NA	NA	NA	16909	NM_027801	212153	Mm.209835	NM_027801	ENSMUSG00000022701	Ccdc191	2610015P09Rik|8430422M09Rik|AU040712	coiled-coil domain containing 191	protein-coding	0.000000	0.363184	
mm_82905.1	chr9	32915562	32915762	-	1	NA	NA	NA	13304	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.010000	0.462687	
mm_71662.1	chr8	60632781	60632981	+	1	NA	NA	NA	56	NM_001293769	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	0.145000	0.751244	
mm_162517.1	chr1	156671269	156671469	-	1	NA	NA	NA	2970	NM_023141	30935	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.000000	0.492537	
mm_33216.1	chr4	126609849	126610049	+	1	NA	NA	NA	95	NM_001145950	230757	Mm.296838	NM_001013755	ENSMUSG00000073755	5730409E04Rik	7530403E16Rik|AI849033	RIKEN cDNA 5730409E04Rik gene	protein-coding	0.090000	0.731343	
mm_81717.1	chr9	111438980	111439180	+	1	NA	NA	NA	-1	NM_172928	245038	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	0.100000	0.711443	
mm_24432.1	chr3	90541101	90541301	+	1	NA	NA	NA	-22	NM_026416	67860	Mm.331185	NM_026416	ENSMUSG00000074457	S100a16	2300002L21Rik|AI325039|AI663996|DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding	0.030000	0.592040	
mm_78065.1	chr9	15239011	15239211	+	1	NA	NA	NA	66	NM_026955	69137	Mm.41396	NM_026955	ENSMUSG00000031937	Vstm5	2200002K05Rik	V-set and transmembrane domain containing 5	protein-coding	0.040000	0.621891	
mm_12693.1	chr2	76369957	76370157	+	1	NA	NA	NA	73	NM_153405	241490	Mm.33310	NM_153405	ENSMUSG00000042369	Rbm45	Drb1|Drbp1|G430095G15Rik	RNA binding motif protein 45	protein-coding	0.120000	0.741294	
mm_9248.1	chr1	171388659	171388859	-	1	NA	NA	NA	-201	NM_001005508	226652	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	0.025000	0.562189	
mm_125218.1	chr15	34082934	34083134	+	1	NA	NA	NA	315	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.110000	0.706468	
mm_156020.1	chrX	107148875	107149075	+	1	NA	NA	NA	48	NM_001122596	213438	Mm.265244	NM_175442	ENSMUSG00000054293	A630033H20Rik	AI662791|P2ry10	RIKEN cDNA A630033H20 gene	protein-coding	0.015000	0.388060	
mm_17330.1	chr2	26505238	26505438	-	1	NA	NA	NA	1411	NR_132655	102639736		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0.010000	0.507463	
mm_155193.1	chrX	56454779	56454979	+	1	NA	NA	NA	40	NM_172779	236790	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	0.045000	0.562189	
mm_109405.1	chr12	110447006	110447206	+	1	NA	NA	NA	-73	NM_001135001	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.155000	0.815920	
mm_101465.1	chr11	30471780	30471980	-	1	NA	NA	NA	-51	NM_001100394	75087	Mm.159422	NM_001100394	ENSMUSG00000040919	4930505A04Rik	-	RIKEN cDNA 4930505A04 gene	protein-coding	0.040000	0.557214	
mm_107568.1	chr12	44328445	44328645	+	1	NA	NA	NA	-340	NM_176930	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.020000	0.527363	
mm_27009.1	chr3	25869739	25869939	-	1	NA	NA	NA	283468	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.452736	
mm_30004.1	chr3	135608270	135608470	-	1	NA	NA	NA	83177	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.035000	0.467662	-29(CCTTTAATGCAT,+,0.00)
mm_95878.1	chr11	58092703	58092903	+	1	NA	NA	NA	-11350	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.010000	0.547264	
mm_7380.1	chr1	107163135	107163335	-	1	NA	NA	NA	-2121	NM_198680	383548	Mm.483991	NM_198680	ENSMUSG00000073602	Serpinb3b	Scca2-rs|Scca2-rs1	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 3B	protein-coding	0.005000	0.532338	
mm_25922.1	chr3	131170328	131170528	+	1	NA	NA	NA	57637	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.015000	0.477612	
mm_77044.1	chr8	109575665	109575865	-	1	NA	NA	NA	3407	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.045000	0.552239	
mm_122089.1	chr14	30625051	30625251	-	1	NA	NA	NA	1057	NM_011103	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.015000	0.626866	
mm_99021.1	chr11	98927698	98927898	+	1	NA	NA	NA	-9898	NM_009024	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.045000	0.636816	
mm_50041.1	chr6	41150220	41150420	+	1	NA	NA	NA	-114811	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.010000	0.437811	
mm_27259.1	chr3	37600141	37600341	-	1	NA	NA	NA	-9650	NR_130162	75947	Mm.109620	NR_130161	ENSMUSG00000085677	4930594O21Rik	-	RIKEN cDNA 4930594O21 gene	ncRNA	0.045000	0.472637	
mm_105297.1	chr11	102480968	102481168	-	1	NA	NA	NA	-11185	NM_010575	16399	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0.000000	0.447761	
mm_134335.1	chr16	16496046	16496246	-	1	NA	NA	NA	31265	NM_001301818	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.000000	0.328358	
mm_84598.1	chr9	70037956	70038156	-	1	NA	NA	NA	32	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.005000	0.477612	19(CTCTTTATAAGG,-,0.00),21(CTTTATAAGGGA,+,0.00)
mm_41958.1	chr5	105876459	105876659	+	1	NA	NA	NA	-9	NR_030777	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.160000	0.761194	
mm_139157.1	chr17	47540649	47540849	+	1	NA	NA	NA	35698	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.025000	0.432836	
mm_98040.1	chr11	85353088	85353288	+	1	NA	NA	NA	24	NM_001166643	192197	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.075000	0.631841	
mm_117430.1	chr13	74561991	74562191	-	1	NA	NA	NA	-68141	NM_146231	235956	Mm.296909	NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.005000	0.402985	
mm_145628.1	chr18	61109666	61109866	+	1	NA	NA	NA	4194	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.040000	0.562189	
mm_25367.1	chr3	107101523	107101723	+	1	NA	NA	NA	56	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.165000	0.791045	
mm_91756.1	chr10	50592453	50592653	-	1	NA	NA	NA	-116	NM_198007	77987	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.090000	0.597015	
mm_132056.1	chr16	29579350	29579550	+	1	NA	NA	NA	116	NM_001199177	74143	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	0.070000	0.656716	
mm_164469.1	chr16	62190356	62190556	+	1	NA	NA	NA	596260	NM_178925	106338	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	0.010000	0.412935	-96(CCCTTTAAATTC,+,0.00)
mm_6434.1	chr1	73984385	73984585	-	1	NA	NA	NA	-120019	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.010000	0.497512	
mm_115637.1	chr13	12257953	12258153	-	1	NA	NA	NA	60	NM_001081128	238505	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.115000	0.641791	
mm_36996.1	chr4	110287407	110287607	-	1	NA	NA	NA	4	NM_001038698	15572	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein-coding	0.020000	0.492537	-52(TCCCATAAATGG,-,0.00)
mm_109080.1	chr12	104413377	104413577	+	1	NA	NA	NA	6769	NM_009252	20716	Mm.482074	NM_009252	ENSMUSG00000021091	Serpina3n	Spi2-2|Spi2.2|Spi2/eb.4	serine (or cysteine) peptidase inhibitor, clade A, member 3N	protein-coding	0.015000	0.502488	
mm_147859.1	chr18	64191646	64191846	-	1	NA	NA	NA	-62613	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.015000	0.497512	
mm_137380.1	chr17	25748518	25748718	+	1	NA	NA	NA	5709	NM_018857	56047	Mm.17510	NM_018857	ENSMUSG00000063011	Msln	MPF	mesothelin	protein-coding	0.000000	0.457711	
mm_77271.1	chr8	116529318	116529518	-	1	NA	NA	NA	24403	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.000000	0.472637	
mm_5115.1	chr1	6443462	6443662	-	1	NA	NA	NA	-43669	NM_001244693	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.328358	47(AAATTTAAAAGG,-,0.00)
mm_125800.1	chr15	74896595	74896795	+	1	NA	NA	NA	-14991	NM_025929	67038	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.025000	0.562189	
mm_116720.1	chr13	51701633	51701833	-	1	NA	NA	NA	50025	NM_029279	75420	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.020000	0.562189	-3(GTTTATATACCC,+,0.00)
mm_93292.1	chr10	96370734	96370934	-	1	NA	NA	NA	144627	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.020000	0.472637	
mm_43072.1	chr5	124446637	124446837	+	1	NA	NA	NA	33	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.020000	0.601990	
mm_67584.1	chr7	83531630	83531830	-	1	NA	NA	NA	-53201	NM_177695	233424	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.005000	0.412935	-33(GTCTATATAAGG,-,0.00),45(TGGCATTAAAGC,-,0.00)
mm_20944.1	chr2	151542341	151542541	-	1	NA	NA	NA	-42	NR_126058	14225	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.100000	0.651741	
mm_79693.1	chr9	60713032	60713232	+	1	NA	NA	NA	11	NM_026235	67557	Mm.44546	NM_026235	ENSMUSG00000034839	Larp6	5430431G03Rik|AI552438|Achn	La ribonucleoprotein domain family, member 6	protein-coding	0.150000	0.746269	
mm_138921.1	chr17	43611814	43612014	+	1	NA	NA	NA	18385	NM_001161366	210510	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	0.010000	0.472637	-81(GTTTTTATAGGG,+,0.00),89(GCCTTTTAAAAG,-,0.00)
mm_136251.1	chr16	90946576	90946776	-	1	NA	NA	NA	-11827	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.010000	0.472637	
mm_68466.1	chr7	110611561	110611761	-	1	NA	NA	NA	3259	NM_177324	319934	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.010000	0.378109	
mm_42263.1	chr5	114130316	114130516	+	1	NA	NA	NA	-19	NM_001040691	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.090000	0.746269	
mm_93196.1	chr10	94298555	94298755	-	1	NA	NA	NA	48	NR_033209	215472	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	0.005000	0.537313	13(GGCTCTATAAGC,-,0.00)
mm_54232.1	chr6	28235014	28235214	-	1	NA	NA	NA	26487	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.000000	0.353234	
mm_7095.1	chr1	88700692	88700892	-	1	NA	NA	NA	1399	NM_177305	320982	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.035000	0.611940	
mm_5941.1	chr1	56637340	56637540	-	1	NA	NA	NA	11	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	0.005000	0.447761	
mm_76083.1	chr8	79374443	79374643	-	1	NA	NA	NA	24925	NM_008539	17125	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.015000	0.557214	
mm_138946.1	chr17	44105822	44106022	+	1	NA	NA	NA	-114	NM_199016	224794	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90|mKIAA0879	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	0.135000	0.771144	
mm_100768.1	chr11	4704217	4704417	-	1	NA	NA	NA	27	NM_197979	66152	Mm.269736	NM_197979	ENSMUSG00000059534	Uqcr10	1110020P15Rik|AA960494|Ucrc	ubiquinol-cytochrome c reductase, complex III subunit X	protein-coding	0.080000	0.562189	
mm_163208.1	chr11	99566266	99566466	-	1	NA	NA	NA	264	NM_023511	69473	Mm.158281	NM_023511	ENSMUSG00000047564	Krtap3-1	2310003K17Rik|KAP3.1|KRTAP3.1	keratin associated protein 3-1	protein-coding	0.020000	0.616915	
mm_20869.1	chr2	148443415	148443615	-	1	NA	NA	NA	20	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.030000	0.582090	
mm_22522.1	chr3	7646706	7646906	+	1	NA	NA	NA	-33046	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.005000	0.333333	
mm_9231.1	chr1	171280837	171281037	-	1	NA	NA	NA	249	NM_008911	19044	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	0.040000	0.542289	
mm_67495.1	chr7	80751929	80752129	-	1	NA	NA	NA	51302	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.015000	0.572139	
mm_20855.1	chr2	148405406	148405606	-	1	NA	NA	NA	2682	NM_009378	21824	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	0.000000	0.308458	
mm_128706.1	chr15	63718169	63718369	-	1	NA	NA	NA	90470	NM_031378	83492	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	0.040000	0.601990	
mm_158961.1	chr1	92491891	92492091	-	1	NA	NA	NA	-238	NM_001011525	258228	Mm.377386	NM_001011525	ENSMUSG00000057464	Olfr1415	MOR103-12	olfactory receptor 1415	protein-coding	0.000000	0.477612	
mm_59023.1	chr7	19282558	19282758	+	1	NA	NA	NA	34	NM_013648	20167	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0.125000	0.756219	
mm_9906.1	chr1	187215162	187215362	-	1	NA	NA	NA	184	NM_029067	74717	Mm.250430	NM_028848	ENSMUSG00000026611	Spata17	1700065F16Rik|4930504I07Rik|4930513F16Rik|MSRG-11	spermatogenesis associated 17	protein-coding	0.025000	0.477612	
mm_141970.1	chr17	35131699	35131899	-	1	NA	NA	NA	-47	NM_018816	55938	Mm.2161	NM_018816	ENSMUSG00000024391	Apom	1190010O19Rik|G3a|NG20	apolipoprotein M	protein-coding	0.035000	0.537313	
mm_128215.1	chr15	36164775	36164975	-	1	NA	NA	NA	9	NM_001081253	78803	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	0.125000	0.756219	
mm_33859.1	chr4	135911581	135911781	+	1	NA	NA	NA	1	NM_001305278	12802	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0.010000	0.497512	
mm_53105.1	chr6	125071178	125071378	+	1	NA	NA	NA	1	NM_001163268	381810	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0.025000	0.582090	
mm_76102.1	chr8	80395006	80395206	-	1	NA	NA	NA	-98939	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.015000	0.462687	
mm_52060.1	chr6	97262461	97262661	+	1	NA	NA	NA	-9781	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.015000	0.472637	
mm_63364.1	chr7	127051617	127051817	+	1	NA	NA	NA	260	NM_026918	69036	Mm.21835	NM_026918	ENSMUSG00000049350	Zg16	1810010M01Rik|AI593689|ZG16p	zymogen granule protein 16	protein-coding	0.025000	0.537313	
mm_101950.1	chr11	50252759	50252959	-	1	NA	NA	NA	-14327	NR_132733	17001	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.015000	0.522388	
mm_76199.1	chr8	82774035	82774235	-	1	NA	NA	NA	-9	NM_145600	30932	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	0.105000	0.666667	
mm_133270.1	chr16	77371497	77371697	+	1	NA	NA	NA	42269	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.000000	0.258706	
mm_167062.1	chr7	94475886	94476086	+	1	NA	NA	NA	1396107	NM_021427	58238	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.000000	0.228856	
mm_62815.1	chr7	113289615	113289815	+	1	NA	NA	NA	79624	NM_133700	68815	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0.000000	0.333333	
mm_14217.1	chr2	127337811	127338011	+	1	NA	NA	NA	-728	NM_172539	215095	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	0.015000	0.557214	
mm_105398.1	chr11	103403855	103404055	-	1	NA	NA	NA	8709	NM_183034	353047	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.010000	0.552239	
mm_100083.1	chr11	115468198	115468398	+	1	NA	NA	NA	5825	NM_001080934	217316	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	0.015000	0.402985	
mm_114637.1	chr13	76443573	76443773	+	1	NA	NA	NA	58712	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.005000	0.263682	53(TGTTATAAAAGG,-,0.00)
mm_9560.1	chr1	173974792	173974992	-	1	NA	NA	NA	7952	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.005000	0.353234	
mm_77824.1	chr9	3416882	3417082	+	1	NA	NA	NA	12897	NM_027545	244672	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	0.000000	0.432836	-71(GTATCTTAAAGG,-,0.00)
mm_9358.1	chr1	172197954	172198154	-	1	NA	NA	NA	8750	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.010000	0.507463	
mm_86043.1	chr9	114496476	114496676	-	1	NA	NA	NA	-32	NM_009916	12773	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	0.000000	0.447761	
mm_43403.1	chr5	135862757	135862957	+	1	NA	NA	NA	-25062	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.000000	0.472637	
mm_10496.1	chr2	14948012	14948212	+	1	NA	NA	NA	74456	NM_001309519	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.005000	0.417910	
mm_117082.1	chr13	59671911	59672111	-	1	NA	NA	NA	3773	NM_001035122	105348	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0.015000	0.437811	
mm_81917.1	chr9	120114870	120115070	+	1	NA	NA	NA	4571	NM_144793	208638	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0.010000	0.527363	
mm_128926.1	chr15	74487559	74487759	-	1	NA	NA	NA	-13	NR_144499	102634630		NR_144499		Gm32168	-	predicted gene, 32168	ncRNA	0.085000	0.666667	
mm_62371.1	chr7	100639209	100639409	+	1	NA	NA	NA	17656	NM_001163187	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.005000	0.442786	
mm_104511.1	chr11	96001306	96001506	-	1	NA	NA	NA	4538	NM_009951	140486	Mm.294769	NM_009951	ENSMUSG00000013415	Igf2bp1	AL024068|AW549074|CRD-BP|Crdbp|D030026A21Rik|D11Moh40e|D11Moh45|IMP-1|IMP1|Neilsen|ZBP-1|Zbp1|mir-3063	insulin-like growth factor 2 mRNA binding protein 1	protein-coding	0.005000	0.323383	
mm_13895.1	chr2	120411388	120411588	+	1	NA	NA	NA	-7372	NM_001110496	211499	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0.015000	0.432836	
mm_160452.1	chr8	105699531	105699731	-	1	NA	NA	NA	1464	NM_001012638	497652	Mm.12964	NM_001012638	ENSMUSG00000038000	Acd	-	adrenocortical dysplasia	protein-coding	0.010000	0.587065	
mm_3659.1	chr1	153304923	153305123	+	1	NA	NA	NA	27763	NM_010683	226519	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	0.010000	0.467662	-34(TGTTATAAAAGC,-,0.00)
mm_137702.1	chr17	29091022	29091222	+	1	NA	NA	NA	143	NM_001111099	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.005000	0.457711	
mm_109108.1	chr12	105337110	105337310	+	1	NA	NA	NA	217	NR_125773	69952	Mm.158311	NR_045047	ENSMUSG00000097929	Tunar	2810011L19Rik|Tuna	Tcl1 upstream neural differentiation associated RNA	ncRNA	0.110000	0.731343	
mm_44021.1	chr5	147418509	147418709	+	1	NA	NA	NA	-11	NR_033625	100039805	Mm.394705	NR_033625	ENSMUSG00000106820	D5Ertd605e	Gm2433	DNA segment, Chr 5, ERATO Doi 605, expressed	ncRNA	0.020000	0.542289	82(CCTCTTAAACTG,+,0.00)
mm_89041.1	chr10	82833871	82834071	+	1	NA	NA	NA	20	NM_001042523	50493	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	0.020000	0.532338	
mm_6936.1	chr1	85604423	85604623	-	1	NA	NA	NA	-632	NM_175397	109032	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|ENSMUSG00000075603|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.000000	0.492537	
mm_91648.1	chr10	42475010	42475210	-	1	NA	NA	NA	3455	NM_145743	215951	Mm.89646	NM_145743	ENSMUSG00000038302	Lace1	CG8520	lactation elevated 1	protein-coding	0.015000	0.527363	
mm_31698.1	chr4	62479962	62480162	+	1	NA	NA	NA	-5	NM_138653	192120	Mm.29808	NM_138653	ENSMUSG00000028392	Bspry	-	B-box and SPRY domain containing	protein-coding	0.130000	0.756219	
mm_47598.1	chr5	124862393	124862593	-	1	NA	NA	NA	-212	NM_001081750	269704	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	0.095000	0.636816	
mm_88206.1	chr10	70189120	70189320	+	1	NA	NA	NA	-15444	NM_001304739	69563	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Mln	myoregulin	protein-coding	0.085000	0.686567	
mm_42632.1	chr5	118437414	118437614	+	1	NA	NA	NA	-123205	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.020000	0.452736	
mm_141785.1	chr17	34304717	34304917	-	1	NA	NA	NA	-1050	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.000000	0.462687	
mm_107413.1	chr12	33964963	33965163	+	1	NA	NA	NA	7392	NM_011658	22160	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	0.000000	0.283582	
mm_87089.1	chr10	31391249	31391449	+	1	NA	NA	NA	23086	NM_011509	100041294	Mm.7821	NM_011509		Supt4b	Gm3258|Supt4h1b|Supt4h2	suppressor of Ty 4B	protein-coding	0.005000	0.487562	
mm_121240.1	chr14	103056162	103056362	+	1	NA	NA	NA	9250	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.010000	0.378109	
mm_72238.1	chr8	74993579	74993779	+	1	NA	NA	NA	29	NM_178017	70823	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0.130000	0.671642	
mm_169768.1	chr15	99820059	99820259	-	1	NA	NA	NA	-10	NM_023063	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.015000	0.492537	-39(GTCCTTATAAGG,-,0.00),-37(CCTTATAAGGCT,+,0.00)
mm_120198.1	chr14	61648263	61648463	+	1	NA	NA	NA	-16253	NR_029733	387174		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0.180000	0.825871	
mm_68511.1	chr7	111593758	111593958	-	1	NA	NA	NA	186119	NM_173739	233733	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	0.000000	0.497512	-98(CTGTTTAAAGGG,-,0.00)
mm_109694.1	chr12	113148598	113148798	+	1	NA	NA	NA	-3314	NM_007763	12925	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	0.010000	0.567164	
mm_133392.1	chr16	84774179	84774379	+	1	NA	NA	NA	156	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.070000	0.651741	
mm_127698.1	chr15	102990809	102991009	+	1	NA	NA	NA	370	NM_010466	15426	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.095000	0.641791	
mm_105913.1	chr11	114983940	114984140	-	1	NA	NA	NA	5846	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.005000	0.457711	
mm_110223.1	chr12	28635777	28635977	-	1	NA	NA	NA	76	NM_011300	20115	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	0.100000	0.621891	
mm_101528.1	chr11	33159871	33160071	-	1	NA	NA	NA	3235	NM_001252261	18148	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	0.010000	0.343284	
mm_521.1	chr1	37541111	37541311	+	1	NA	NA	NA	-195	NM_173870	269181	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.075000	0.656716	
mm_155503.1	chrX	73787012	73787212	+	1	NA	NA	NA	-31	NM_009279	20832	Mm.831	NM_009279	ENSMUSG00000002014	Ssr4	AW743063|C78062|Trap	signal sequence receptor, delta	protein-coding	0.100000	0.666667	
mm_47905.1	chr5	134945155	134945355	-	1	NA	NA	NA	1679	NM_009903	12740	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	0.015000	0.542289	
mm_122623.1	chr14	51145506	51145706	-	1	NA	NA	NA	1161	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.010000	0.532338	
mm_124612.1	chr15	3279396	3279596	+	1	NA	NA	NA	8519	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.030000	0.542289	
mm_6940.1	chr1	85727068	85727268	-	1	NA	NA	NA	9438	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.000000	0.318408	65(AGCTTTTTAAAG,-,0.00),66(GCTTTTTAAAGC,-,0.00),67(CTTTTTAAAGCA,+,0.00)
mm_164909.1	chr18	70753393	70753593	-	1	NA	NA	NA	185201	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.005000	0.417910	-77(CCTCATATAGCT,+,0.00),31(AAGCTTAAAAGG,-,0.00),33(GCTTAAAAGGCA,+,0.00)
mm_140211.1	chr17	83795299	83795499	+	1	NA	NA	NA	51391	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.045000	0.452736	
mm_115688.1	chr13	13862809	13863009	-	1	NA	NA	NA	78602	NM_010317	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0.015000	0.522388	-34(CACTATAAAAGG,-,0.00)
mm_164474.1	chr16	68129612	68129812	+	1	NA	NA	NA	-508804	NM_178721	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.015000	0.497512	
mm_158554.1	chrX	147553969	147554169	-	1	NA	NA	NA	12	NM_001081173	210297	Mm.30506	NM_001081173	ENSMUSG00000031290	Lrch2	AI316885|mKIAA1495	leucine-rich repeats and calponin homology (CH) domain containing 2	protein-coding	0.080000	0.686567	
mm_45480.1	chr5	70842215	70842415	-	1	NA	NA	NA	302	NM_010252	14405	Mm.255292	NM_010252	ENSMUSG00000001260	Gabrg1	GabaA|GabaA/BZ	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1	protein-coding	0.035000	0.532338	
mm_137001.1	chr17	17491288	17491488	+	1	NA	NA	NA	88702	NM_025681	66643	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.035000	0.616915	
mm_134000.1	chr16	4789775	4789975	-	1	NA	NA	NA	60	NM_025670	66626	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0.080000	0.626866	
mm_10488.1	chr2	14823946	14824146	+	1	NA	NA	NA	-46	NM_001252533	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.015000	0.447761	
mm_168380.1	chr1	12312649	12312849	-	1	NA	NA	NA	-113237	NR_105759	102465961		NR_105759	ENSMUSG00000098555	Mir6341	Gm27262|mmu-mir-6341	microRNA 6341	ncRNA	0.010000	0.542289	-32(CCTTTTATAAGC,+,0.00),-32(CCTTTTATAAGC,-,0.00)
mm_89376.1	chr10	88885810	88886010	+	1	NA	NA	NA	-82	NM_145423	216225	Mm.77381	NM_145423	ENSMUSG00000020062	Slc5a8	Ait|SMCT	solute carrier family 5 (iodide transporter), member 8	protein-coding	0.080000	0.621891	
mm_32681.1	chr4	115784924	115785124	+	1	NA	NA	NA	210	NM_181040	230649	Mm.109600	NM_181040	ENSMUSG00000028710	Atpaf1	6330547J17Rik|AI593252|ATP11|ATP11p	ATP synthase mitochondrial F1 complex assembly factor 1	protein-coding	0.140000	0.756219	
mm_138408.1	chr17	35067030	35067230	+	1	NA	NA	NA	-195	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.000000	0.552239	
mm_122665.1	chr14	51913879	51914079	-	1	NA	NA	NA	-491	NM_013864	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.055000	0.606965	-57(CTATTTATAGCG,+,0.00)
mm_132405.1	chr16	35001680	35001880	+	1	NA	NA	NA	-20641	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.005000	0.398010	22(TTCCTTATAAGA,-,0.00)
mm_86015.1	chr9	112234794	112234994	-	1	NA	NA	NA	-53	NM_001177619	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.055000	0.641791	
mm_95585.1	chr11	53299764	53299964	+	1	NA	NA	NA	615	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.080000	0.641791	
mm_166516.1	chr6	17306064	17306264	+	1	NA	NA	NA	-171	NM_007616	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.045000	0.577114	
mm_139579.1	chr17	57080500	57080700	+	1	NA	NA	NA	-2090	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.000000	0.547264	
mm_100218.1	chr11	117076747	117076947	+	1	NA	NA	NA	64	NR_027059	76972	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0.095000	0.656716	
mm_83012.1	chr9	36779905	36780105	-	1	NA	NA	NA	-12427	NM_008408	16430	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	0.005000	0.537313	
mm_5006.1	chr1	191978153	191978353	+	1	NA	NA	NA	-1	NM_001303132	74023	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	0.010000	0.497512	
mm_161180.1	chr13	46609438	46609638	+	1	NA	NA	NA	-59984	NM_001033192	97863	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	0.035000	0.527363	
mm_169625.1	chr15	4026398	4026598	+	1	NA	NA	NA	70	NM_024188	67041	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	0.065000	0.696517	
mm_69575.1	chr7	135700879	135701079	-	1	NA	NA	NA	15400	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.020000	0.442786	
mm_25842.1	chr3	129217471	129217671	+	1	NA	NA	NA	3639	NM_001287048	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.050000	0.606965	
mm_21861.1	chr2	165884969	165885169	-	1	NA	NA	NA	-231	NM_001252587	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.030000	0.601990	
mm_95068.1	chr11	32554811	32555011	+	1	NA	NA	NA	21645	NM_009288	20868	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.025000	0.398010	
mm_128286.1	chr15	37007702	37007902	-	1	NA	NA	NA	-400	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.085000	0.651741	
mm_160126.1	chr7	28451776	28451976	+	1	NA	NA	NA	-109	NM_030562	80749	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	0.155000	0.840796	
mm_159304.1	chr2	178430461	178430661	+	1	NA	NA	NA	46	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.025000	0.537313	
mm_122728.1	chr14	52316216	52316416	-	1	NA	NA	NA	7	NM_001244916	50524	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding	0.065000	0.701493	
mm_173165.1	chrX	41482977	41483177	+	1	NA	NA	NA	81548	NM_001290451	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding	0.065000	0.651741	
mm_120251.1	chr14	63011553	63011753	+	1	NA	NA	NA	-118	NM_001039121	654458	Mm.390737	NM_001039121	ENSMUSG00000075572	Defb43	BD-43|EG654458|mBD-43	defensin beta 43	protein-coding	0.025000	0.497512	
mm_85314.1	chr9	101198887	101199087	-	1	NA	NA	NA	86	NM_172144	235542	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0.020000	0.477612	
mm_48881.1	chr5	151137864	151138064	-	1	NA	NA	NA	52229	NM_001163493	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.010000	0.368159	
mm_132541.1	chr16	37881253	37881453	+	1	NA	NA	NA	12953	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.005000	0.507463	
mm_122313.1	chr14	36919233	36919433	-	1	NA	NA	NA	202	NM_001347503	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.040000	0.582090	
mm_109496.1	chr12	111449746	111449946	+	1	NA	NA	NA	7185	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.015000	0.547264	73(CCTCTTAAAGTC,+,0.00)
mm_65035.1	chr7	18560465	18560665	-	1	NA	NA	NA	6740	NM_001037168	545925	Mm.440302	NM_001037168	ENSMUSG00000070797	Psg27	EG545925|cea15	pregnancy-specific glycoprotein 27	protein-coding	0.015000	0.437811	
mm_15203.1	chr2	154211429	154211629	+	1	NA	NA	NA	11149	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.005000	0.517413	
mm_94164.1	chr10	128747537	128747737	-	1	NA	NA	NA	-242	NM_030100	78428	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	0.015000	0.517413	
mm_43350.1	chr5	135168373	135168573	+	1	NA	NA	NA	101	NM_009745	12054	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	0.150000	0.726368	
mm_77938.1	chr9	7355275	7355475	+	1	NA	NA	NA	8001	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.432836	
mm_97533.1	chr11	78536343	78536543	+	1	NA	NA	NA	7	NM_018854	55978	Mm.358671	NM_018854	ENSMUSG00000001105	Ift20	0610009H04Rik|AU015496	intraflagellar transport 20	protein-coding	0.065000	0.606965	
mm_128264.1	chr15	36787777	36787977	-	1	NA	NA	NA	3055	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.005000	0.492537	
mm_131107.1	chr16	5049967	5050167	+	1	NA	NA	NA	-1	NM_026666	170644	Mm.66356	NM_026666	ENSMUSG00000039473	Ubn1	1110029L11Rik|2610108L02Rik|AA673476|AW124741	ubinuclein 1	protein-coding	0.145000	0.706468	
mm_158156.1	chrX	103480504	103480704	-	1	NA	NA	NA	2629	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.000000	0.348259	
mm_160248.1	chr7	105367981	105368181	+	1	NA	NA	NA	-247	NM_146355	258352	Mm.377449	NM_146355	ENSMUSG00000073906	Olfr692	MOR36-1	olfactory receptor 692	protein-coding	0.000000	0.437811	
mm_1237.1	chr1	62795893	62796093	+	1	NA	NA	NA	-1261	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.050000	0.557214	
mm_150540.1	chr19	39309597	39309797	+	1	NA	NA	NA	22612	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.005000	0.288557	
mm_79593.1	chr9	58370457	58370657	+	1	NA	NA	NA	53	NR_040727	73529	Mm.490924	NR_040727	ENSMUSG00000100487	1700072B07Rik	-	RIKEN cDNA 1700072B07 gene	ncRNA	0.005000	0.522388	
mm_39866.1	chr5	31054688	31054888	+	1	NA	NA	NA	8	NM_001289522	69719	Mm.305535	NM_023525	ENSMUSG00000013629	Cad	2410008J01Rik|AU018859|Cpad	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding	0.120000	0.711443	
mm_113657.1	chr13	42680744	42680944	+	1	NA	NA	NA	45	NM_001302635	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.020000	0.532338	
mm_115296.1	chr13	111984183	111984383	+	1	NA	NA	NA	116347	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.015000	0.462687	
mm_56147.1	chr6	87811726	87811926	-	1	NA	NA	NA	-47	NM_001039394	69834	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0.120000	0.776119	
mm_100749.1	chr11	4160196	4160396	-	1	NA	NA	NA	-3	NM_001164620	216516	Mm.386854	NM_177616	ENSMUSG00000051427	Ccdc157	4930562D19Rik|mKIAA1656	coiled-coil domain containing 157	protein-coding	0.100000	0.661692	
mm_23278.1	chr3	51660969	51661169	+	1	NA	NA	NA	-110	NM_174995	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.000000	0.467662	73(GCCTTTATAAAG,-,0.00),75(CTTTATAAAGGA,+,0.00)
mm_9429.1	chr1	172500060	172500260	-	1	NA	NA	NA	-86	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.070000	0.641791	-33(GGGTTTAAAGGC,-,0.00)
mm_42611.1	chr5	117949480	117949680	+	1	NA	NA	NA	-27190	NM_145564	231670	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	0.010000	0.557214	
mm_23654.1	chr3	67582788	67582988	+	1	NA	NA	NA	120	NM_025813	66868	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.110000	0.706468	
mm_115854.1	chr13	21289179	21289379	-	1	NA	NA	NA	3407	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.005000	0.477612	
mm_100874.1	chr11	5949941	5950141	-	1	NA	NA	NA	40	NM_010292	103988	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	0.010000	0.527363	
mm_149399.1	chr19	11390166	11390366	+	1	NA	NA	NA	14778	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.005000	0.457711	
mm_109646.1	chr12	112829573	112829773	+	1	NA	NA	NA	-284	NM_028023	71963	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	0.105000	0.736318	
mm_163862.1	chr14	19418707	19418907	+	1	NA	NA	NA	183780	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.348259	
mm_19917.1	chr2	115859040	115859240	-	1	NA	NA	NA	205479	NM_001346044	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.040000	0.467662	33(TGCTCTAAATGC,-,0.00)
mm_43802.1	chr5	142822491	142822691	+	1	NA	NA	NA	-5204	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.030000	0.582090	77(CACTTTTAGAGG,-,0.00),78(ACTTTTAGAGGA,+,0.00)
mm_93889.1	chr10	125328452	125328652	-	1	NA	NA	NA	-17	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.025000	0.457711	
mm_154955.1	chrX	36792866	36793066	+	1	NA	NA	NA	-2631	NM_007451	11740	Mm.371544	NM_007451	ENSMUSG00000016319	Slc25a5	Ant2	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	protein-coding	0.010000	0.477612	
mm_67608.1	chr7	83883362	83883562	-	1	NA	NA	NA	879	NM_030705	80889	Mm.272998	NM_030705	ENSMUSG00000070462	Mesdc1	AW061151	mesoderm development candidate 1	protein-coding	0.120000	0.741294	
mm_138810.1	chr17	39846418	39846618	+	1	NA	NA	NA	3521	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.055000	0.562189	
mm_58762.1	chr7	14518462	14518662	+	1	NA	NA	NA	-25636	NM_001184981	638251	Mm.482063	NM_001184981	ENSMUSG00000094156	Sult2a7	EG638251|Gm7231	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 7	protein-coding	0.015000	0.462687	
mm_12311.1	chr2	69135690	69135890	+	1	NA	NA	NA	-10	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.025000	0.477612	
mm_94088.1	chr10	128498593	128498793	-	1	NA	NA	NA	-8	NM_172259	216459	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	0.050000	0.631841	
mm_81634.1	chr9	110880100	110880300	+	1	NA	NA	NA	26	NM_001146059	235633	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0.155000	0.776119	
mm_23149.1	chr3	40160270	40160470	+	1	NA	NA	NA	362542	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.010000	0.368159	
mm_72689.1	chr8	84969545	84969745	+	1	NA	NA	NA	23	NM_011563	21672	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0.100000	0.671642	15(ACGCATAAAAGG,-,0.00)
mm_57135.1	chr6	122608409	122608609	-	1	NA	NA	NA	1578	NM_008108	14562	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0.010000	0.447761	
mm_79723.1	chr9	61595312	61595512	+	1	NA	NA	NA	223046	NM_001083927	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.005000	0.537313	
mm_21232.1	chr2	156052857	156053057	-	1	NA	NA	NA	-10	NM_001136556	74562	Mm.159241	NM_001136556	ENSMUSG00000013338	Fer1l4	9130402C12Rik	fer-1-like 4 (C. elegans)	protein-coding	0.025000	0.597015	
mm_143564.1	chr17	74265725	74265925	-	1	NA	NA	NA	29038	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.000000	0.388060	
mm_4669.1	chr1	180382287	180382487	+	1	NA	NA	NA	-51838	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.020000	0.507463	
mm_122675.1	chr14	52008876	52009076	-	1	NA	NA	NA	5582	NM_001253695	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.040000	0.656716	
mm_88890.1	chr10	81137632	81137832	+	1	NA	NA	NA	1461	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.060000	0.631841	
mm_147208.1	chr18	37935316	37935516	-	1	NA	NA	NA	60	NM_001305980	13367	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0.125000	0.706468	
mm_107336.1	chr12	32378784	32378984	+	1	NA	NA	NA	95	NM_001162903	72123	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.150000	0.761194	
mm_129141.1	chr15	76200472	76200672	-	1	NA	NA	NA	35	NM_201390	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.035000	0.701493	
mm_102713.1	chr11	67052546	67052746	-	1	NA	NA	NA	-24	NM_001040026	52892	Mm.129731	NM_001040026	ENSMUSG00000069844	Sco1	2610001C07Rik|D11Bwg1310e	SCO1 cytochrome c oxidase assembly protein	protein-coding	0.085000	0.631841	
mm_26487.1	chr3	145096750	145096950	+	1	NA	NA	NA	2256	NM_178697	229933	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	0.020000	0.422886	
mm_168435.1	chr11	3539182	3539382	-	1	NA	NA	NA	10	NM_013870	29856	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.065000	0.641791	
mm_110090.1	chr12	25095657	25095857	-	1	NA	NA	NA	335	NM_010496	15902	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.045000	0.567164	
mm_84427.1	chr9	65827624	65827824	-	1	NA	NA	NA	-160	NM_172536	214812	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	0.145000	0.736318	
mm_10142.1	chr2	4218069	4218269	+	1	NA	NA	NA	65306	NM_172475	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.000000	0.388060	
mm_102303.1	chr11	55607861	55608061	-	1	NA	NA	NA	237	NM_001290821	14654	Mm.89320	NM_020492	ENSMUSG00000000263	Glra1	nmf11|oscillator|ot|spasmodic|spd	glycine receptor, alpha 1 subunit	protein-coding	0.085000	0.646766	
mm_117564.1	chr13	85284532	85284732	-	1	NA	NA	NA	4854	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.000000	0.283582	
mm_51475.1	chr6	83006171	83006371	+	1	NA	NA	NA	27200	NM_010070	13448	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.025000	0.472637	
mm_88591.1	chr10	79728661	79728861	+	1	NA	NA	NA	12127	NM_008226	15166	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	0.015000	0.557214	
mm_29832.1	chr3	129755160	129755360	-	1	NA	NA	NA	62	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.015000	0.462687	-92(AGCTTTAAAAAG,-,0.00),-91(GCTTTAAAAAGG,+,0.00),-90(CTTTAAAAAGGA,+,0.00),-35(CTGTATATAGGG,-,0.00)
mm_170736.1	chr2	153196905	153197105	-	1	NA	NA	NA	28436	NM_198617	241732	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.035000	0.383085	
mm_173175.1	chrX	50181330	50181530	+	1	NA	NA	NA	-171195	NM_146390	258385	Mm.377470	NM_146390	ENSMUSG00000050504	Olfr1323	MOR216-1	olfactory receptor 1323	protein-coding	0.015000	0.393035	
mm_78011.1	chr9	13466545	13466745	+	1	NA	NA	NA	35284	NR_028271	18689	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.010000	0.412935	
mm_119514.1	chr14	47385629	47385829	+	1	NA	NA	NA	11869	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.030000	0.492537	
mm_68232.1	chr7	104465058	104465258	-	1	NA	NA	NA	35	NM_009099	20128	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.000000	0.442786	
mm_90510.1	chr10	128042414	128042614	+	1	NA	NA	NA	7168	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.005000	0.502488	
mm_166724.1	chr6	120473414	120473614	-	1	NA	NA	NA	10317	NM_008359	16172	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.010000	0.567164	
mm_127777.1	chr15	3463755	3463955	-	1	NA	NA	NA	117987	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.005000	0.338308	
mm_125603.1	chr15	60141806	60142006	+	1	NA	NA	NA	-125288	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.015000	0.452736	-34(TCATATAAAAGC,-,0.00)
mm_91012.1	chr10	15263120	15263320	-	1	NA	NA	NA	502931	NM_008703	18101	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.025000	0.412935	-50(CTGTATAAAAAG,-,0.00)
mm_76146.1	chr8	82332391	82332591	-	1	NA	NA	NA	70095	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.000000	0.348259	
mm_76582.1	chr8	89015557	89015757	-	1	NA	NA	NA	-9078	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.005000	0.532338	
mm_169235.1	chr13	70422586	70422786	-	1	NA	NA	NA	-150555	NR_045934	73584	Mm.442491	NR_045934	ENSMUSG00000101051	1700100L14Rik	-	RIKEN cDNA 1700100L14 gene	ncRNA	0.005000	0.482587	
mm_121281.1	chr14	103899384	103899584	+	1	NA	NA	NA	-55008	NM_001136061	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.025000	0.477612	
mm_33975.1	chr4	137640226	137640426	+	1	NA	NA	NA	-24400	NM_029563	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.005000	0.358209	-94(GATTTTAAAGGC,+,0.00),88(TGTTATTAAAGG,-,0.00)
mm_34459.1	chr4	148130789	148130989	+	1	NA	NA	NA	-31	NM_001305420	71890	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding	0.150000	0.776119	
mm_152974.1	chr19	29386920	29387120	-	1	NA	NA	NA	19582	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.298507	
mm_134144.1	chr16	10784637	10784837	-	1	NA	NA	NA	799	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.135000	0.741294	
mm_157933.1	chrX	81822691	81822891	-	1	NA	NA	NA	-364669	NM_173435	245492	Mm.109633	NM_173435	ENSMUSG00000060673	4930595M18Rik	-	RIKEN cDNA 4930595M18 gene	protein-coding	0.075000	0.706468	
mm_34355.1	chr4	144613601	144613801	+	1	NA	NA	NA	-6	NM_001081248	435815	Mm.439623	NM_001081248	ENSMUSG00000070609	Gm13177	OTTMUSG00000010747	predicted gene 13177	protein-coding	0.005000	0.497512	
mm_71611.1	chr8	56551053	56551253	+	1	NA	NA	NA	19	NM_015791	50753	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0.085000	0.562189	-70(CCTTTAAGGAGC,+,0.00)
mm_103849.1	chr11	83079791	83079991	-	1	NA	NA	NA	14779	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.015000	0.452736	
mm_121828.1	chr14	20480010	20480210	-	1	NA	NA	NA	23	NM_001110794	11750	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	0.045000	0.552239	
mm_101042.1	chr11	8622469	8622669	-	1	NA	NA	NA	41966	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.010000	0.482587	
mm_35575.1	chr4	41731144	41731344	-	1	NA	NA	NA	-102	NM_001252622	550619	Mm.425179	NM_001017362	ENSMUSG00000066224	Arid3c	OTTMUSG00000006683	AT rich interactive domain 3C (BRIGHT-like)	protein-coding	0.110000	0.751244	
mm_157241.1	chrX	17572160	17572360	-	1	NA	NA	NA	65	NM_001313745	72018	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	0.060000	0.611940	19(TCCTTTAAAGTG,+,0.00),20(CCTTTAAAGTGG,+,0.00)
mm_88866.1	chr10	80940141	80940341	+	1	NA	NA	NA	10150	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.015000	0.512438	
mm_152306.1	chr19	9135479	9135679	-	1	NA	NA	NA	-13	NM_025610	66514	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	0.095000	0.631841	
mm_167590.1	chr9	46240934	46241134	+	1	NA	NA	NA	190	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.025000	0.572139	-6(GGCTTTAAATGA,-,0.00)
mm_2713.1	chr1	128141854	128142054	+	1	NA	NA	NA	38648	NM_181750	226412	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	0.000000	0.447761	
mm_71588.1	chr8	54954809	54955009	+	1	NA	NA	NA	181	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.020000	0.487562	
mm_163953.1	chr14	54463940	54464140	-	1	NA	NA	NA	-107	NM_022993	65107	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	0.080000	0.572139	
mm_133630.1	chr16	91647782	91647982	+	1	NA	NA	NA	58	NM_178880	20658	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	0.075000	0.577114	
mm_165795.1	chr3	139274019	139274219	+	1	NA	NA	NA	68226	NM_198659	381476	Mm.188334	NM_198659	ENSMUSG00000047940	Stpg2	B930007M17Rik|Gm1017	sperm tail PG rich repeat containing 2	protein-coding	0.000000	0.328358	
mm_81941.1	chr9	120470248	120470448	+	1	NA	NA	NA	-22258	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.005000	0.412935	13(CCATATATACAC,+,0.00)
mm_94902.1	chr11	29194114	29194314	+	1	NA	NA	NA	21307	NM_134034	104570	Mm.276386	NM_134034	ENSMUSG00000020463	Smek2	AW011752|AW557776|Ppp4r3b|mKIAA1387	SMEK homolog 2, suppressor of mek1 (Dictyostelium)	protein-coding	0.010000	0.333333	
mm_18279.1	chr2	52424717	52424917	-	1	NA	NA	NA	57	NM_182994	75423	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.175000	0.815920	
mm_16812.1	chr2	11259418	11259618	-	1	NA	NA	NA	-79971	NR_040369	100503147	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	OTTMUSG00000011311	predicted gene 13293	ncRNA	0.015000	0.552239	-33(GCTTTAAGACCC,+,0.00)
mm_103974.1	chr11	84819303	84819503	-	1	NA	NA	NA	112	NM_145433	217038	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik|ENSMUSG00000054212	mitochondrial rRNA methyltransferase 1	protein-coding	0.065000	0.646766	
mm_116231.1	chr13	33159646	33159846	-	1	NA	NA	NA	8	NM_001164524	20707	Mm.219429	NM_011453	ENSMUSG00000021404	Serpinb9c	3830421J05Rik|Nk9|Spi11	serine (or cysteine) peptidase inhibitor, clade B, member 9c	protein-coding	0.015000	0.522388	
mm_50633.1	chr6	51282791	51282991	+	1	NA	NA	NA	-12981	NR_029719	387166		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.025000	0.402985	
mm_141600.1	chr17	32635048	32635248	-	1	NA	NA	NA	13829	NM_001100187	677156	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	0.055000	0.611940	
mm_114605.1	chr13	75789752	75789952	+	1	NA	NA	NA	-50034	NM_053108	93692	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.000000	0.467662	
mm_56156.1	chr6	87850878	87851078	-	1	NA	NA	NA	128	NM_001109746	12785	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	0.105000	0.656716	
mm_56493.1	chr6	99204366	99204566	-	1	NA	NA	NA	62049	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.005000	0.472637	
mm_2932.1	chr1	132298519	132298719	+	1	NA	NA	NA	-7	NM_144810	213417	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0.085000	0.691542	
mm_166879.1	chr7	25412929	25413129	-	1	NA	NA	NA	-143	NM_153576	232983	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0.005000	0.472637	
mm_144160.1	chr18	5625870	5626070	+	1	NA	NA	NA	-33533	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	0.010000	0.358209	
mm_134802.1	chr16	24382248	24382448	-	1	NA	NA	NA	-11002	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.005000	0.393035	
mm_98808.1	chr11	97066748	97066948	+	1	NA	NA	NA	3080	NR_106181	102465893		NR_106181	ENSMUSG00000098769	Mir8103	Gm27841|mmu-mir-8103	microRNA 8103	ncRNA	0.025000	0.537313	
mm_164041.1	chr14	88437680	88437880	+	1	NA	NA	NA	33616	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding	0.000000	0.313433	
mm_146971.1	chr18	33463683	33463883	-	1	NA	NA	NA	-84	NM_001109989	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.065000	0.626866	
mm_163301.1	chr11	120660506	120660706	-	1	NA	NA	NA	231	NM_175263	77583	Mm.32839	NM_175263	ENSMUSG00000042988	Notum	5730593N15Rik	notum pectinacetylesterase homolog (Drosophila)	protein-coding	0.155000	0.776119	
mm_1243.1	chr1	62798024	62798224	+	1	NA	NA	NA	-3392	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.010000	0.462687	36(GTTTTTAAACAG,+,0.00)
mm_93894.1	chr10	125388752	125388952	-	1	NA	NA	NA	-60317	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.035000	0.611940	
mm_165338.1	chr2	117962088	117962288	+	1	NA	NA	NA	140260	NR_040631	73938	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0.015000	0.462687	
mm_156158.1	chrX	129979558	129979758	+	1	NA	NA	NA	229916	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.000000	0.248756	
mm_72108.1	chr8	71611140	71611340	+	1	NA	NA	NA	216	NM_146211	234407	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	0.150000	0.731343	
mm_168761.1	chr12	119772779	119772979	+	1	NA	NA	NA	-173083	NM_001294154	217951	Mm.387395	NM_001160385	ENSMUSG00000048004	Tmem196	Gm528	transmembrane protein 196	protein-coding	0.025000	0.502488	-33(GAGTATATAAGA,-,0.00)
mm_70859.1	chr8	24419500	24419700	+	1	NA	NA	NA	19346	NM_026931	69068	Mm.25775	NM_026931	ENSMUSG00000056313	1810011O10Rik	1110065B09Rik|AW121743|AW321058	RIKEN cDNA 1810011O10 gene	protein-coding	0.015000	0.497512	-88(GACCTTTAAAGA,-,0.00),45(CCCCATAAAGGC,+,0.00),45(CCCCATAAAGGC,-,0.00)
mm_22246.1	chr2	174614258	174614458	-	1	NA	NA	NA	-29176	NM_001099328	100043757	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	ENSMUSG00000050600|OTTMUSG00000017459	zinc finger protein 831	protein-coding	0.005000	0.557214	
mm_76614.1	chr8	91135593	91135793	-	1	NA	NA	NA	-199	NM_010241	14339	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	0.045000	0.542289	
mm_166165.1	chr5	20779219	20779419	+	1	NA	NA	NA	102805	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.010000	0.527363	
mm_127732.1	chr15	103281949	103282149	+	1	NA	NA	NA	-3076	NR_029766	724064		NR_029766	ENSMUSG00000065560	Mir148b	Mirn148b|mir-148b	microRNA 148b	ncRNA	0.005000	0.407960	
mm_111855.1	chr12	107939141	107939341	-	1	NA	NA	NA	64173	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.000000	0.358209	
mm_99380.1	chr11	102041426	102041626	+	1	NA	NA	NA	15	NM_001160713	52685	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	0.020000	0.611940	
mm_72495.1	chr8	83738313	83738513	+	1	NA	NA	NA	2898	NM_001163029	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.005000	0.532338	
mm_18000.1	chr2	38212348	38212548	-	1	NA	NA	NA	74936	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.005000	0.283582	
mm_34810.1	chr4	154935869	154936069	+	1	NA	NA	NA	-7892	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.015000	0.532338	
mm_55780.1	chr6	81910398	81910598	-	1	NA	NA	NA	302	NR_046040	74220	Mm.490521	NR_046040	ENSMUSG00000101404	1700009C05Rik	-	RIKEN cDNA 1700009C05 gene	ncRNA	0.080000	0.552239	
mm_4320.1	chr1	171851807	171852007	+	1	NA	NA	NA	12210	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.010000	0.398010	30(GCTTTTATAAAA,+,0.00),81(ACTTATAAAGGA,+,0.00)
mm_68914.1	chr7	126459646	126459846	-	1	NA	NA	NA	3327	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.035000	0.522388	
mm_80693.1	chr9	91403370	91403570	+	1	NA	NA	NA	34498	NM_009576	22774	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.000000	0.452736	
mm_137423.1	chr17	26204224	26204424	+	1	NA	NA	NA	1362	NM_001081069	50782	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	0.015000	0.512438	
mm_113574.1	chr13	40545464	40545664	+	1	NA	NA	NA	-182244	NR_125899	102633805		NR_125899	ENSMUSG00000097752	Gm26688	Tfap2a-as1	predicted gene, 26688	ncRNA	0.005000	0.427861	
mm_150876.1	chr19	45075989	45076189	+	1	NA	NA	NA	-50	NM_178929	107250	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.060000	0.542289	
mm_161624.1	chr16	59202126	59202326	-	1	NA	NA	NA	198	NM_001011808	258036	Mm.390851	NM_001011808	ENSMUSG00000052537	Olfr198	MOR182-8	olfactory receptor 198	protein-coding	0.005000	0.472637	
mm_47164.1	chr5	120735822	120736022	-	1	NA	NA	NA	13926	NM_145227	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.010000	0.442786	71(GCCTCTTTAGGG,-,0.00)
mm_45246.1	chr5	59886123	59886323	-	1	NA	NA	NA	99779	NR_040683	71057	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.000000	0.278607	
mm_27426.1	chr3	51521239	51521439	-	1	NA	NA	NA	37373	NM_016858	19338	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.025000	0.577114	
mm_170311.1	chr18	35554171	35554371	+	1	NA	NA	NA	-296	NR_035472	100316700		NR_035472	ENSMUSG00000105743	Mir1949	mir-1949|mmu-mir-1949	microRNA 1949	ncRNA	0.005000	0.462687	
mm_37816.1	chr4	131807841	131808041	-	1	NA	NA	NA	30337	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	0.005000	0.447761	
mm_113073.1	chr13	23779188	23779388	+	1	NA	NA	NA	-3253	NM_001029935	214158	Mm.314151	NM_001029935	ENSMUSG00000064140	Trim38	Gm23	tripartite motif-containing 38	protein-coding	0.015000	0.537313	
mm_17729.1	chr2	32451333	32451533	-	1	NA	NA	NA	37	NM_001164357	227731	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.155000	0.766169	
mm_72414.1	chr8	81856250	81856450	+	1	NA	NA	NA	513788	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.015000	0.417910	
mm_23179.1	chr3	40799963	40800163	+	1	NA	NA	NA	112	NR_045576	20873	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo-like kinase 4	protein-coding	0.120000	0.676617	-72(GCCTCTAAGAAG,-,0.00)
mm_23037.1	chr3	34757350	34757550	+	1	NA	NA	NA	-14625	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA	0.025000	0.522388	
mm_36387.1	chr4	77168666	77168866	-	1	NA	NA	NA	1043129	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.010000	0.373134	
mm_63497.1	chr7	127783940	127784140	+	1	NA	NA	NA	6651	NM_178029	233904	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	0.025000	0.542289	
mm_57668.1	chr6	128487925	128488125	-	1	NA	NA	NA	38695	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.020000	0.492537	
mm_42522.1	chr5	115565169	115565369	+	1	NA	NA	NA	6	NM_172719	231659	Mm.153014	NM_172719	ENSMUSG00000041638	Gcn1l1	4932409G22|AL022764|G431004K08Rik|GCN1L|Gcn1|mKIAA0219	GCN1 general control of amino-acid synthesis 1-like 1 (yeast)	protein-coding	0.160000	0.805970	
mm_49494.1	chr6	29735520	29735720	+	1	NA	NA	NA	123	NM_176996	319757	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	0.100000	0.771144	55(CGGTTTTAATGG,-,0.00),57(GTTTTAATGGTG,+,0.00)
mm_22520.1	chr3	7635702	7635902	+	1	NA	NA	NA	-22042	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.005000	0.353234	24(CCCTAGAAAAAG,-,0.00)
mm_116045.1	chr13	27249376	27249576	-	1	NA	NA	NA	7046	NM_008865	18776	Mm.37203	NM_008865	ENSMUSG00000038891	Prl3b1	Csh2|Ghd8|PL|Pl-2|Pl2|mPL-II|mplII	prolactin family 3, subfamily b, member 1	protein-coding	0.025000	0.452736	
mm_54368.1	chr6	31126617	31126817	-	1	NA	NA	NA	-63624	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.030000	0.567164	
mm_165850.1	chr4	8939134	8939334	+	1	NA	NA	NA	248828	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.010000	0.492537	
mm_64473.1	chr7	143026517	143026717	+	1	NA	NA	NA	20958	NM_001128081	27027	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.010000	0.492537	
mm_50177.1	chr6	41572081	41572281	+	1	NA	NA	NA	-33301	NM_001146351	13848	Mm.271976	NM_007680	ENSMUSG00000029869	Ephb6	Cekl|Mep	Eph receptor B6	protein-coding	0.005000	0.368159	
mm_146019.1	chr18	69500837	69501037	+	1	NA	NA	NA	155216	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.035000	0.527363	
mm_91585.1	chr10	40234795	40234995	-	1	NA	NA	NA	12084	NM_001042556	67239	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	0.005000	0.308458	-11(GCTTTTAGGTCG,+,0.00),55(GTCTCTAAAAGA,-,0.00)
mm_117776.1	chr13	96670722	96670922	-	1	NA	NA	NA	114	NM_008255	15357	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0.130000	0.736318	
mm_97100.1	chr11	73326499	73326699	+	1	NA	NA	NA	-1962	NM_023113	11484	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	0.015000	0.437811	
mm_169628.1	chr15	44017026	44017226	-	1	NA	NA	NA	-147097	NM_175502	239408	Mm.41219	NM_175502	ENSMUSG00000054409	Tmem74	AA549547|B230382K22Rik	transmembrane protein 74	protein-coding	0.035000	0.487562	
mm_102790.1	chr11	68451266	68451466	-	1	NA	NA	NA	19241	NM_177320	320207	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik	phosphoinositide-3-kinase, regulatory subunit 5, p101	protein-coding	0.030000	0.626866	
mm_46515.1	chr5	105287984	105288184	-	1	NA	NA	NA	5615	NM_194336	100702	Mm.491210	NM_194336	ENSMUSG00000079362	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	0.005000	0.343284	
mm_6056.1	chr1	60180263	60180463	-	1	NA	NA	NA	-236	NM_173444	269198	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	0.100000	0.716418	
mm_17858.1	chr2	34799697	34799897	-	1	NA	NA	NA	115	NM_145522	227746	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.070000	0.651741	68(GTCTCTTAAGGC,-,0.00)
mm_93891.1	chr10	125328548	125328748	-	1	NA	NA	NA	-113	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.025000	0.422886	
mm_127160.1	chr15	98634633	98634833	+	1	NA	NA	NA	-34	NM_007581	12297	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0.115000	0.746269	
mm_46192.1	chr5	98016809	98017009	-	1	NA	NA	NA	14053	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.040000	0.507463	
mm_146106.1	chr18	74216117	74216317	+	1	NA	NA	NA	5	NM_028868	74322	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.120000	0.636816	
mm_130658.1	chr15	100641371	100641571	-	1	NA	NA	NA	-4531	NM_001033872	207818	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.040000	0.587065	
mm_57223.1	chr6	123263250	123263450	-	1	NA	NA	NA	1243	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.005000	0.477612	
mm_55699.1	chr6	72899729	72899929	-	1	NA	NA	NA	150	NM_019715	74287	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0.175000	0.850746	
mm_133977.1	chr16	4522966	4523166	-	1	NA	NA	NA	9	NM_001347162	106393	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	0.025000	0.601990	
mm_121471.1	chr14	120911133	120911333	+	1	NA	NA	NA	39	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	0.120000	0.731343	
mm_23109.1	chr3	37481263	37481463	+	1	NA	NA	NA	61413	NM_021343	57815	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0.085000	0.671642	
mm_163345.1	chr12	16672189	16672389	+	1	NA	NA	NA	18819	NM_008747	18217	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT2R|NTRL	neurotensin receptor 2	protein-coding	0.005000	0.542289	
mm_169949.1	chr16	74206156	74206356	+	1	NA	NA	NA	135811	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.055000	0.646766	
mm_45673.1	chr5	77216149	77216349	-	1	NA	NA	NA	-4778	NM_001289768	69982	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0.010000	0.517413	
mm_72477.1	chr8	83608199	83608399	+	1	NA	NA	NA	124	NM_018808	81489	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.125000	0.706468	-34(GGGTATATAGAG,-,0.00)
mm_120596.1	chr14	70077114	70077314	+	1	NA	NA	NA	-231	NM_018781	13655	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.045000	0.661692	
mm_82100.1	chr9	123061643	123061843	+	1	NA	NA	NA	27002	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.020000	0.462687	
mm_126559.1	chr15	82149027	82149227	+	1	NA	NA	NA	1858	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.015000	0.323383	73(CCTTATAGATTG,+,0.00)
mm_50622.1	chr6	50133209	50133409	+	1	NA	NA	NA	23068	NM_001164733	56524	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.015000	0.388060	-86(TGCTTTTAAAGT,-,0.00),-85(GCTTTTAAAGTT,+,0.00)
mm_99360.1	chr11	101639949	101640149	+	1	NA	NA	NA	12100	NM_025654	66599	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.015000	0.507463	
mm_141329.1	chr17	28484771	28484971	-	1	NA	NA	NA	1278	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.030000	0.467662	
mm_130732.1	chr15	101248043	101248243	-	1	NA	NA	NA	-18703	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.015000	0.577114	-34(TCCTATAAATAG,-,0.00),-32(CTATAAATAGCC,+,0.00)
mm_30396.1	chr3	152248332	152248532	-	1	NA	NA	NA	17888	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.005000	0.328358	-45(TCCTTTATAGCC,+,0.00)
mm_169291.1	chr13	98926210	98926410	-	1	NA	NA	NA	74	NM_178716	238799	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.125000	0.731343	
mm_55383.1	chr6	58965411	58965611	-	1	NA	NA	NA	-58385	NM_021432	58243	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.020000	0.467662	-39(CCTTTAAGAAAC,+,0.00)
mm_44234.1	chr5	5265597	5265797	-	1	NA	NA	NA	371	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.015000	0.477612	
mm_64825.1	chr7	11988450	11988650	-	1	NA	NA	NA	-52749	NM_001166731	628946	Mm.484974	NM_001166731	ENSMUSG00000095864	Vmn1r77	Gm6935	vomeronasal 1 receptor 77	protein-coding	0.060000	0.497512	
mm_133462.1	chr16	89157851	89158051	+	1	NA	NA	NA	-47910	NM_001163615	622935	Mm.459837	NM_001163615	ENSMUSG00000091039	Krtap20-2	1190004K03Rik|EG622935|Gm6371	keratin associated protein 20-2	protein-coding	0.005000	0.472637	-33(GTGTATAAAAGG,-,0.00)
mm_72730.1	chr8	85080858	85081058	+	1	NA	NA	NA	-5	NM_001001493	414077	Mm.35790	NM_001001493	ENSMUSG00000059355	Wdr83os	-	WD repeat domain 83 opposite strand	protein-coding	0.040000	0.502488	-28(TACTCTAAAAGC,-,0.00)
mm_170099.1	chr17	39843139	39843339	+	1	NA	NA	NA	242	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.090000	0.641791	
mm_35983.1	chr4	55134734	55134934	-	1	NA	NA	NA	186889	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.000000	0.427861	
mm_87935.1	chr10	62678377	62678577	+	1	NA	NA	NA	-4031	NR_106074	102465987		NR_106074	ENSMUSG00000105329	Mir7215	mmu-mir-7215	microRNA 7215	ncRNA	0.010000	0.402985	
mm_55491.1	chr6	69544843	69545043	-	1	NA	NA	NA	-217769	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.373134	-95(GTGTTTATAAGC,-,0.00)
mm_21756.1	chr2	164839637	164839837	-	1	NA	NA	NA	5964	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.030000	0.606965	
mm_36400.1	chr4	77823466	77823666	-	1	NA	NA	NA	388329	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.005000	0.348259	
mm_56391.1	chr6	94826785	94826985	-	1	NA	NA	NA	44029	NR_035483	100316707		NR_035483	ENSMUSG00000088552	Mir1957a	Mir1957|mmu-mir-1957|mmu-mir-1957a	microRNA 1957a	ncRNA	0.005000	0.432836	
mm_76233.1	chr8	83574592	83574792	-	1	NA	NA	NA	7934	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.030000	0.626866	
mm_130736.1	chr15	101253601	101253801	-	1	NA	NA	NA	-13145	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.015000	0.507463	
mm_29680.1	chr3	122984287	122984487	-	1	NA	NA	NA	60	NM_133857	99526	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	0.115000	0.701493	
mm_100665.1	chr11	3331091	3331291	-	1	NA	NA	NA	460	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.025000	0.452736	-92(GACTTTAAAAGG,-,0.00),-91(ACTTTAAAAGGG,+,0.00)
mm_79435.1	chr9	56052803	56053003	+	1	NA	NA	NA	11058	NM_011992	26611	Mm.1782	NM_011992	ENSMUSG00000032320	Rcn2	AA408742|Tcbp49	reticulocalbin 2	protein-coding	0.015000	0.323383	
mm_165972.1	chr4	100861315	100861515	+	1	NA	NA	NA	84736	NM_198037	320508	Mm.151962	NM_198037	ENSMUSG00000028532	Cachd1	1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573	cache domain containing 1	protein-coding	0.020000	0.402985	
mm_10965.1	chr2	25702307	25702507	+	1	NA	NA	NA	2333	NM_153558	227627	Mm.44630	NM_153558	ENSMUSG00000062061	Obp2a	BC027556|Lcn13	odorant binding protein 2A	protein-coding	0.005000	0.532338	
mm_70723.1	chr8	17590430	17590630	+	1	NA	NA	NA	-55145	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.005000	0.452736	
mm_16662.1	chr2	6720951	6721151	-	1	NA	NA	NA	611	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.010000	0.393035	-31(GCTTCTTTAAGG,-,0.00)
mm_65513.1	chr7	25754706	25754906	-	1	NA	NA	NA	-86	NM_144922	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.085000	0.636816	
mm_1184.1	chr1	61880231	61880431	+	1	NA	NA	NA	241507	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0.010000	0.402985	
mm_98120.1	chr11	87127068	87127268	+	1	NA	NA	NA	93	NM_197987	68729	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.130000	0.711443	
mm_14169.1	chr2	126674544	126674744	+	1	NA	NA	NA	948	NM_001271469	14391	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.095000	0.601990	
mm_145246.1	chr18	51189117	51189317	+	1	NA	NA	NA	71319	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0.015000	0.452736	
mm_31739.1	chr4	63213995	63214195	+	1	NA	NA	NA	-1317	NM_025685	373864	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0.095000	0.646766	-34(CGATTTAAAAGG,-,0.00)
mm_92612.1	chr10	80137310	80137510	-	1	NA	NA	NA	-23	NM_001195268	100503659	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.055000	0.651741	
mm_57740.1	chr6	129038448	129038648	-	1	NA	NA	NA	-7353	NR_024262	232408	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.000000	0.497512	
mm_124221.1	chr14	100284611	100284811	-	1	NA	NA	NA	-134915	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.055000	0.661692	
mm_79670.1	chr9	59676818	59677018	+	1	NA	NA	NA	20550	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.005000	0.457711	
mm_135940.1	chr16	74279639	74279839	-	1	NA	NA	NA	62328	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.010000	0.417910	
mm_36107.1	chr4	58839891	58840091	-	1	NA	NA	NA	-54271	NM_146920	258922	Mm.223327	NM_146920	ENSMUSG00000043385	Olfr267	MOR262-1	olfactory receptor 267	protein-coding	0.020000	0.393035	
mm_162349.1	chr1	53851522	53851722	+	1	NA	NA	NA	2198	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.030000	0.472637	
mm_167783.1	chr9	119691278	119691478	+	1	NA	NA	NA	27654	NM_009134	20264	Mm.247042	NM_009134	ENSMUSG00000034533	Scn10a	Nav1.8|PN3|SNS	sodium channel, voltage-gated, type X, alpha	protein-coding	0.040000	0.537313	
mm_150207.1	chr19	32792106	32792306	+	1	NA	NA	NA	34629	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.010000	0.343284	
mm_142244.1	chr17	37482652	37482852	-	1	NA	NA	NA	777	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.025000	0.492537	
mm_143796.1	chr17	82940935	82941135	-	1	NA	NA	NA	137190	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0.005000	0.308458	
mm_53135.1	chr6	125192094	125192294	+	1	NA	NA	NA	-6	NM_025595	66493	Mm.138749	NM_025595	ENSMUSG00000030335	Mrpl51	2610511M02Rik|CDA09|HSPC241|Mrp64	mitochondrial ribosomal protein L51	protein-coding	0.040000	0.567164	
mm_13451.1	chr2	105425862	105426062	+	1	NA	NA	NA	-26643	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0.030000	0.497512	
mm_151508.1	chr19	58732011	58732211	+	1	NA	NA	NA	3224	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.025000	0.537313	
mm_2722.1	chr1	128171704	128171904	+	1	NA	NA	NA	-30557	NR_029543	387147		NR_029543	ENSMUSG00000065520	Mir128-1	Mirn128|Mirn128-1|Mirn128a|mir-128-1	microRNA 128-1	ncRNA	0.000000	0.308458	
mm_94615.1	chr11	16752155	16752355	+	1	NA	NA	NA	52	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.070000	0.666667	
mm_129069.1	chr15	75664055	75664255	-	1	NA	NA	NA	14635	NM_028404	72960	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	0.030000	0.572139	
mm_49685.1	chr6	33368547	33368747	+	1	NA	NA	NA	119497	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.010000	0.333333	15(GCTTTTATACTC,+,0.00)
mm_49204.1	chr6	15720399	15720599	+	1	NA	NA	NA	-162	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.010000	0.562189	
mm_99883.1	chr11	109432621	109432821	+	1	NA	NA	NA	6501	NM_001252193	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.005000	0.527363	
mm_121424.1	chr14	120286855	120287055	+	1	NA	NA	NA	11286	NM_175341	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding	0.000000	0.472637	
mm_55951.1	chr6	85333384	85333584	-	1	NA	NA	NA	-62	NM_178639	94282	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	0.065000	0.631841	31(CATTTTAAAAGG,-,0.00)
mm_25082.1	chr3	100436879	100437079	+	1	NA	NA	NA	10574	NR_040543	73806	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.010000	0.487562	
mm_10604.1	chr2	18698955	18699155	+	1	NA	NA	NA	33	NM_001001334	381350	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	0.100000	0.681592	
mm_102176.1	chr11	54027643	54027843	-	1	NA	NA	NA	361	NM_019687	30805	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	0.060000	0.641791	
mm_39555.1	chr5	22550317	22550517	+	1	NA	NA	NA	4	NR_102315	320719	Mm.459265	NR_102315	ENSMUSG00000097207	6030443J06Rik	1700030G06Rik	RIKEN cDNA 6030443J06 gene	ncRNA	0.095000	0.651741	
mm_7132.1	chr1	91052763	91052963	-	1	NA	NA	NA	-581	NM_001310732	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.080000	0.686567	
mm_146923.1	chr18	31911164	31911364	-	1	NA	NA	NA	639	NM_026006	67158	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	0.110000	0.681592	
mm_28643.1	chr3	95228056	95228256	-	1	NA	NA	NA	-268	NM_172395	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.060000	0.582090	
mm_103834.1	chr11	83020633	83020833	-	1	NA	NA	NA	-11	NM_001167743	276950	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0.015000	0.512438	-29(GCTTTTCTGGAC,+,0.00)
mm_120155.1	chr14	60702859	60703059	+	1	NA	NA	NA	-29945	NM_001310594	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.015000	0.527363	64(CTTTTAAGAGAC,+,0.00)
mm_130013.1	chr15	88124331	88124531	-	1	NA	NA	NA	-190443	NR_045281	328579	Mm.146839	NR_045281		B230214G05Rik	B230214G05	RIKEN cDNA B230214G05 gene	ncRNA	0.030000	0.557214	
mm_35516.1	chr4	41124204	41124404	-	1	NA	NA	NA	35	NM_139236	230082	Mm.285797	NM_139236	ENSMUSG00000028430	Nol6	AA410091|Nrap	nucleolar protein family 6 (RNA-associated)	protein-coding	0.045000	0.601990	
mm_61897.1	chr7	90060062	90060262	+	1	NA	NA	NA	31003	NR_110364	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	0.000000	0.487562	-17(CTTTATAAAAAG,-,0.00)
mm_103528.1	chr11	77200719	77200919	-	1	NA	NA	NA	-11851	NM_176965	319634	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	0.000000	0.363184	
mm_41977.1	chr5	107484667	107484867	+	1	NA	NA	NA	-12978	NM_001007574	231570	Mm.261891	NM_001007574	ENSMUSG00000044060	A830010M20Rik	AI849226|Kiaa1107|mKIAA1107	RIKEN cDNA A830010M20 gene	protein-coding	0.000000	0.353234	
mm_22855.1	chr3	28263472	28263672	+	1	NA	NA	NA	358	NM_001163009	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.100000	0.666667	
mm_128982.1	chr15	74833603	74833803	-	1	NA	NA	NA	7940	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.005000	0.412935	-79(GTTTATAAAAAG,-,0.00)
mm_164807.1	chr18	29785798	29785998	-	1	NA	NA	NA	-289482	NR_045391	78058	Mm.416952	NR_045391		4930578E11Rik	-	RIKEN cDNA 4930578E11 gene	ncRNA	0.015000	0.452736	
mm_90841.1	chr10	8723435	8723635	-	1	NA	NA	NA	162535	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.015000	0.547264	
mm_36193.1	chr4	62329295	62329495	-	1	NA	NA	NA	31153	NM_001045528	338355	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.015000	0.477612	
mm_39405.1	chr5	14514896	14515096	+	1	NA	NA	NA	78	NM_001110796	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.120000	0.756219	
mm_18918.1	chr2	76738996	76739196	-	1	NA	NA	NA	63781	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.010000	0.462687	
mm_169282.1	chr13	96693810	96694010	-	1	NA	NA	NA	-22974	NM_008255	15357	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0.010000	0.432836	
mm_22370.1	chr2	181147776	181147976	-	1	NA	NA	NA	9139	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.120000	0.741294	
mm_167621.1	chr9	58026897	58027097	+	1	NA	NA	NA	-5277	NM_001243265	330951	Mm.406992	NM_001243265		Gm16130	E330033L03|OTTMUSG00000030814	predicted gene 16130	protein-coding	0.005000	0.472637	
mm_168449.1	chr11	41111421	41111621	-	1	NA	NA	NA	-356235	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.070000	0.656716	
mm_8202.1	chr1	138123402	138123602	-	1	NA	NA	NA	51624	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.005000	0.427861	
mm_101398.1	chr11	26593535	26593735	-	1	NA	NA	NA	285	NM_027260	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.095000	0.776119	
mm_162995.1	chr11	29130684	29130884	+	1	NA	NA	NA	33	NM_027869	71701	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	0.090000	0.691542	
mm_34458.1	chr4	148130703	148130903	+	1	NA	NA	NA	-105	NM_027426	70433	Mm.275288	NM_027426	ENSMUSG00000029005	Draxin	2610109H07Rik|neucrin	dorsal inhibitory axon guidance protein	protein-coding	0.140000	0.800995	
mm_58543.1	chr7	4521729	4521929	+	1	NA	NA	NA	614	NM_009406	21954	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0.045000	0.631841	
mm_51055.1	chr6	65631435	65631635	+	1	NA	NA	NA	-40076	NM_172399	68169	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding	0.005000	0.398010	
mm_144389.1	chr18	20669910	20670110	+	1	NA	NA	NA	4760	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.030000	0.492537	
mm_79506.1	chr9	57428072	57428272	+	1	NA	NA	NA	11942	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.010000	0.522388	-51(TGGTTTTAAAGA,-,0.00)
mm_70018.1	chr7	142558498	142558698	-	1	NA	NA	NA	0	NR_002452	330677	Mm.265130	NR_002452	ENSMUSG00000087090	Nctc1	9530074L01|Rhit1	non-coding transcript 1	ncRNA	0.015000	0.577114	
mm_86254.1	chr9	121495562	121495762	-	1	NA	NA	NA	32	NM_001284508	12424	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.035000	0.557214	-36(AGCTATTTAAGA,-,0.00)
mm_50213.1	chr6	42282117	42282317	+	1	NA	NA	NA	-4468	NM_013491	12723	Mm.386757	NM_013491	ENSMUSG00000029862	Clcn1	Clc-1|Clc1|SMCC1|adr|mto|myotonia|nmf355	chloride channel, voltage-sensitive 1	protein-coding	0.005000	0.348259	
mm_43614.1	chr5	138085015	138085215	+	1	NA	NA	NA	31	NM_029869	74570	Mm.213114	NM_029869	ENSMUSG00000029729	Zkscan1	5930429A01Rik|9130423L19Rik|9230118B16Rik|AI646829|AI788588|C87323|KOX18|PHZ-37|ZNF139	zinc finger with KRAB and SCAN domains 1	protein-coding	0.060000	0.601990	
mm_95749.1	chr11	54891412	54891612	+	1	NA	NA	NA	-11342	NM_001329860	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.020000	0.492537	
mm_80444.1	chr9	77960879	77961079	+	1	NA	NA	NA	43614	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.020000	0.477612	
mm_118000.1	chr13	100552361	100552561	-	1	NA	NA	NA	37	NM_008756	18260	Mm.4807	NM_008756	ENSMUSG00000021638	Ocln	AI503564|Ocl	occludin	protein-coding	0.085000	0.716418	
mm_117628.1	chr13	92030837	92031037	-	1	NA	NA	NA	-42895	NM_009027	19418	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0.035000	0.512438	-95(TCGTTTATATGG,-,0.00)
mm_6142.1	chr1	64816583	64816783	-	1	NA	NA	NA	-78933	NM_022721	14367	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0.035000	0.388060	
mm_70956.1	chr8	26978070	26978270	+	1	NA	NA	NA	834	NM_001110508	353310	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.035000	0.572139	
mm_119332.1	chr14	39655267	39655467	+	1	NA	NA	NA	-296	NR_045936	73591	Mm.65499	NR_045936	ENSMUSG00000101261	1700109I08Rik	-	RIKEN cDNA 1700109I08 gene	ncRNA	0.005000	0.517413	-35(CACTATAAAAGG,-,0.00)
mm_82191.1	chr9	123942191	123942391	+	1	NA	NA	NA	26401	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.000000	0.422886	
mm_43194.1	chr5	128814250	128814450	+	1	NA	NA	NA	78104	NM_021311	57749	Mm.272720	NM_021311	ENSMUSG00000029423	Piwil1	MIWI	piwi-like RNA-mediated gene silencing 1	protein-coding	0.005000	0.412935	
mm_22545.1	chr3	9028266	9028466	+	1	NA	NA	NA	-23851	NM_001025264	21985	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.035000	0.492537	
mm_70982.1	chr8	27260227	27260427	+	1	NA	NA	NA	0	NM_007918	13685	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0.085000	0.741294	
mm_73821.1	chr8	117411214	117411414	+	1	NA	NA	NA	-41709	NR_106045	102466801		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.035000	0.522388	
mm_131875.1	chr16	23192018	23192218	+	1	NA	NA	NA	-32622	NM_145933	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.010000	0.477612	
mm_81174.1	chr9	107301741	107301941	+	1	NA	NA	NA	5182	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.025000	0.452736	
mm_111614.1	chr12	102401554	102401754	-	1	NA	NA	NA	38159	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.010000	0.507463	
mm_51536.1	chr6	83195744	83195944	+	1	NA	NA	NA	9898	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.015000	0.577114	
mm_148770.1	chr19	6095675	6095875	+	1	NA	NA	NA	-10023	NM_001009546	381204	Mm.359041	NM_001009546	ENSMUSG00000054999	Naaladl1	Gm964|Naaladasel	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding	0.010000	0.492537	
mm_80586.1	chr9	85327325	85327525	+	1	NA	NA	NA	-275	NM_001160379	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.070000	0.636816	
mm_60382.1	chr7	44473538	44473738	+	1	NA	NA	NA	3291	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.010000	0.592040	
mm_109165.1	chr12	108305897	108306097	+	1	NA	NA	NA	-273	NM_001044380	214305	Mm.36423	NM_001044380	ENSMUSG00000021260	Hhipl1	1600002O04Rik|AK129450|mKIAA1822	hedgehog interacting protein-like 1	protein-coding	0.015000	0.542289	-52(TCTTTTATGCCA,+,0.00)
mm_166104.1	chr4	146514885	146515085	+	1	NA	NA	NA	65	NM_001243139	100041433	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247|OTTMUSG00000011075	zinc finger protein 981	protein-coding	0.005000	0.537313	
mm_65072.1	chr7	19023444	19023644	-	1	NA	NA	NA	-5	NM_008260	15377	Mm.42260	NM_008260	ENSMUSG00000040891	Foxa3	Hnf-3g|Hnf3g|Tcf-3g|Tcf3g	forkhead box A3	protein-coding	0.090000	0.731343	-34(GGCTATAAAAAG,-,0.00)
mm_139534.1	chr17	56708763	56708963	+	1	NA	NA	NA	8058	NM_178926	106639	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0.005000	0.507463	
mm_23567.1	chr3	63295518	63295718	+	1	NA	NA	NA	183	NM_001289462	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.100000	0.716418	
mm_42554.1	chr5	116802621	116802821	+	1	NA	NA	NA	-210904	NM_026886	68955	Mm.146779	NM_026886	ENSMUSG00000063919	Srrm4	1500001A10Rik|B230202K19Rik|bv|mKIAA1853|nSR100	serine/arginine repetitive matrix 4	protein-coding	0.010000	0.457711	
mm_15030.1	chr2	152695367	152695567	+	1	NA	NA	NA	8319	NM_025543	66405	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	0.035000	0.537313	
mm_136801.1	chr17	12317972	12318172	+	1	NA	NA	NA	588	NM_011948	26407	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.045000	0.522388	
mm_142197.1	chr17	36958120	36958320	-	1	NA	NA	NA	208	NM_023162	66136	Mm.486229	NM_023162	ENSMUSG00000036315	Znrd1	1110014N07Rik|Rpa12	zinc ribbon domain containing, 1	protein-coding	0.040000	0.537313	
mm_110021.1	chr12	16753185	16753385	-	1	NA	NA	NA	3954	NM_001252071	268527	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	0.030000	0.621891	51(CCCTTAATGGGG,+,0.00)
mm_107790.1	chr12	61631638	61631838	+	1	NA	NA	NA	108571	NM_001310586	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.005000	0.318408	
mm_167058.1	chr7	90059859	90060059	-	1	NA	NA	NA	30800	NR_110364	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	0.015000	0.542289	
mm_112841.1	chr13	20829445	20829645	+	1	NA	NA	NA	35432	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.015000	0.527363	
mm_23558.1	chr3	62339492	62339692	+	1	NA	NA	NA	815	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	0.090000	0.666667	
mm_362.1	chr1	33907807	33908007	+	1	NA	NA	NA	-140	NM_001310484	320705	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.185000	0.835821	
mm_53355.1	chr6	129350359	129350559	+	1	NA	NA	NA	215	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.005000	0.407960	
mm_46348.1	chr5	102479922	102480122	-	1	NA	NA	NA	-1369	NM_146161	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.010000	0.497512	
mm_25879.1	chr3	130617560	130617760	+	1	NA	NA	NA	85	NM_027907	71760	Mm.29125	NM_027907	ENSMUSG00000019232	Etnppl	1300019H02Rik|AI195447|Agxt2l1	ethanolamine phosphate phospholyase	protein-coding	0.030000	0.552239	
mm_170020.1	chr1	7190218	7190418	+	1	NA	NA	NA	101398	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.025000	0.497512	
mm_148269.1	chr18	81924031	81924231	-	1	NA	NA	NA	67949	NR_039589	100628596		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.025000	0.517413	-26(GGCTATTAAAGT,-,0.00)
mm_101276.1	chr11	21371170	21371370	-	1	NA	NA	NA	-3	NM_001290634	216558	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0.080000	0.691542	
mm_137462.1	chr17	26607738	26607938	+	1	NA	NA	NA	46326	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.010000	0.507463	
mm_98805.1	chr11	97050512	97050712	+	1	NA	NA	NA	-16	NM_001310509	71240	Mm.190450	NM_001081434	ENSMUSG00000038534	Osbpl7	4933437E18Rik	oxysterol binding protein-like 7	protein-coding	0.010000	0.477612	
mm_123381.1	chr14	63271616	63271816	-	1	NA	NA	NA	-26445	NM_001310610	14463	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0.030000	0.517413	
mm_5728.1	chr1	44218828	44219028	-	1	NA	NA	NA	3	NM_207281	403183	Mm.336176	NM_207281	ENSMUSG00000046828	Mettl21e	4832428D23Rik|Gm991	methyltransferase like 21E	protein-coding	0.000000	0.467662	
mm_123809.1	chr14	70522564	70522764	-	1	NA	NA	NA	1417	NM_011359	20389	Mm.24040	NM_011359	ENSMUSG00000022097	Sftpc	Bricd6|SP-C|SP5|SPC|Sftp-2|Sftp2|pro-SpC	surfactant associated protein C	protein-coding	0.030000	0.597015	
mm_43038.1	chr5	124004898	124005098	+	1	NA	NA	NA	8146	NR_105999	102465625		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.020000	0.631841	
mm_13340.1	chr2	102787434	102787634	+	1	NA	NA	NA	81096	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.005000	0.487562	
mm_118118.1	chr13	104037533	104037733	-	1	NA	NA	NA	71981	NM_029447	75805	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	0.010000	0.482587	
mm_63548.1	chr7	128068513	128068713	+	1	NA	NA	NA	5973	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.005000	0.537313	
mm_102498.1	chr11	60417849	60418049	-	1	NA	NA	NA	804	NM_025757	66771	Mm.29950	NM_025757	ENSMUSG00000018415	Gid4	4933439F18Rik	GID complex subunit 4, VID24 homolog	protein-coding	0.085000	0.751244	
mm_57497.1	chr6	125313761	125313961	-	1	NA	NA	NA	9	NM_010736	17000	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|CD18|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	0.100000	0.776119	
mm_68027.1	chr7	101007702	101007902	-	1	NA	NA	NA	4196	NM_001302347	18442	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0.005000	0.492537	
mm_42331.1	chr5	114902638	114902838	+	1	NA	NA	NA	5804	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.000000	0.363184	
mm_30898.1	chr4	32335852	32336052	+	1	NA	NA	NA	-81483	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.020000	0.482587	
mm_142068.1	chr17	35690303	35690503	-	1	NA	NA	NA	10187	NM_001198833	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.030000	0.502488	
mm_163734.1	chr13	119689842	119690042	-	1	NA	NA	NA	-409	NM_145942	208715	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	0.015000	0.427861	
mm_144645.1	chr18	33193212	33193412	+	1	NA	NA	NA	20550	NM_001347624	170459	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	0.010000	0.383085	
mm_128715.1	chr15	63997949	63998149	-	1	NA	NA	NA	62399	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.120000	0.761194	
mm_121155.1	chr14	102980018	102980218	+	1	NA	NA	NA	2514	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.030000	0.427861	
mm_172304.1	chr7	104315339	104315539	-	1	NA	NA	NA	56	NM_023835	76681	Mm.458309	NM_023835	ENSMUSG00000066258	Trim12a	2310043C01Rik|Trim12	tripartite motif-containing 12A	protein-coding	0.010000	0.432836	
mm_147124.1	chr18	35830031	35830231	-	1	NA	NA	NA	313	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.150000	0.825871	
mm_89038.1	chr10	82833794	82833994	+	1	NA	NA	NA	-57	NM_001042523	50493	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	0.015000	0.497512	
mm_123797.1	chr14	70505379	70505579	-	1	NA	NA	NA	14781	NM_009755	12153	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.020000	0.552239	
mm_158587.1	chrX	150814193	150814393	-	1	NA	NA	NA	46	NM_030700	80884	Mm.22575	NM_030700	ENSMUSG00000025268	Maged2	4833439A22Rik|Mage-d2|ORF1	melanoma antigen, family D, 2	protein-coding	0.025000	0.651741	
mm_64714.1	chr7	4631993	4632193	-	1	NA	NA	NA	-1611	NM_023440	68255	Mm.389784	NM_023440	ENSMUSG00000045282	Tmem86b	C330014O21Rik	transmembrane protein 86B	protein-coding	0.000000	0.512438	
mm_30604.1	chr4	6394537	6394737	+	1	NA	NA	NA	28957	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.025000	0.457711	
mm_7895.1	chr1	133424295	133424495	-	1	NA	NA	NA	-183	NM_011439	20668	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	0.125000	0.721393	
mm_1218.1	chr1	62730214	62730414	+	1	NA	NA	NA	26997	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.005000	0.432836	
mm_64346.1	chr7	142380786	142380986	+	1	NA	NA	NA	6984	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.015000	0.477612	
mm_85313.1	chr9	101198847	101199047	-	1	NA	NA	NA	126	NM_172144	235542	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0.015000	0.417910	
mm_148596.1	chr19	5088486	5088686	+	1	NA	NA	NA	48	NM_026553	68090	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	0.080000	0.577114	
mm_122569.1	chr14	50807484	50807684	-	1	NA	NA	NA	187	NR_002142	85029		NR_002142	ENSMUSG00000092837	Rpph1	Gm24821|H1RNA|Rmrp5|Rpr	ribonuclease P RNA component H1	ncRNA	0.085000	0.691542	
mm_49581.1	chr6	30642253	30642453	+	1	NA	NA	NA	3135	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.030000	0.557214	
mm_31407.1	chr4	48047646	48047846	+	1	NA	NA	NA	2441	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.040000	0.577114	
mm_147177.1	chr18	36744436	36744636	-	1	NA	NA	NA	51	NM_010885	17991	Mm.29867	NM_010885	ENSMUSG00000014294	Ndufa2	AV000592|B8|C1-B8|CI-B8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2	protein-coding	0.095000	0.592040	
mm_124365.1	chr14	105643601	105643801	-	1	NA	NA	NA	-19931	NR_105814	102465207		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	0.010000	0.422886	
mm_96595.1	chr11	69090787	69090987	+	1	NA	NA	NA	2359	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.005000	0.407960	
mm_31159.1	chr4	43442376	43442576	+	1	NA	NA	NA	199	NM_011571	21754	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.055000	0.601990	
mm_125620.1	chr15	61987696	61987896	+	1	NA	NA	NA	2455	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.090000	0.616915	
mm_95659.1	chr11	53770879	53771079	+	1	NA	NA	NA	506	NM_001159396	16362	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.000000	0.407960	
mm_164460.1	chr16	57887961	57888161	+	1	NA	NA	NA	-133324	NM_007739	12837	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0.010000	0.447761	
mm_157529.1	chrX	51017922	51018122	-	1	NA	NA	NA	-4	NM_172413	72065	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	0.065000	0.651741	
mm_128612.1	chr15	58823474	58823674	-	1	NA	NA	NA	-147	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.135000	0.771144	
mm_68327.1	chr7	106503932	106504132	-	1	NA	NA	NA	-62959	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.338308	
mm_109703.1	chr12	113260087	113260287	+	1	NA	NA	NA	74284	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.040000	0.502488	
mm_63457.1	chr7	127541214	127541414	+	1	NA	NA	NA	13417	NR_034045	100217442	Mm.451113	NR_034045	ENSMUSG00000065259	Snora30	MBI-26	small nucleolar RNA, H/ACA box 30	snoRNA	0.015000	0.527363	33(CCCTTTCTAGTC,+,0.00)
mm_7835.1	chr1	132139579	132139779	-	1	NA	NA	NA	6	NM_008795	18557	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.035000	0.597015	
mm_164652.1	chr17	35835744	35835944	-	1	NA	NA	NA	2457	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.025000	0.562189	
mm_55387.1	chr6	59024340	59024540	-	1	NA	NA	NA	62	NM_153574	58909	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0.040000	0.567164	
mm_146322.1	chr18	80678686	80678886	+	1	NA	NA	NA	29387	NM_001164111	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.005000	0.472637	
mm_107919.1	chr12	71048296	71048496	+	1	NA	NA	NA	32429	NM_001081195	238247	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|MmRBBP1|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.010000	0.482587	
mm_23745.1	chr3	69343908	69344108	+	1	NA	NA	NA	27090	NM_178726	242083	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	0.000000	0.263682	
mm_55421.1	chr6	65129921	65130121	-	1	NA	NA	NA	14709	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.000000	0.502488	
mm_71026.1	chr8	33599483	33599683	+	1	NA	NA	NA	-38	NM_017374	19053	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	0.145000	0.756219	
mm_49997.1	chr6	41048046	41048246	+	1	NA	NA	NA	-12637	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.442786	
mm_50121.1	chr6	41535395	41535595	+	1	NA	NA	NA	13719	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.025000	0.537313	
mm_13220.1	chr2	96834679	96834879	+	1	NA	NA	NA	516610	NM_001289743	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.000000	0.323383	
mm_158021.1	chrX	95969988	95970188	-	1	NA	NA	NA	-13114	NM_152822	76130	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	0.025000	0.557214	5(AGCTTTTAATGG,-,0.00),7(CTTTTAATGGAG,+,0.00)
mm_128182.1	chr15	34678620	34678820	-	1	NA	NA	NA	-14	NM_145469	223473	Mm.258402	NM_145469	ENSMUSG00000038879	Nipal2	9330161F08Rik|Npal2	NIPA-like domain containing 2	protein-coding	0.140000	0.741294	
mm_51812.1	chr6	88835171	88835371	+	1	NA	NA	NA	6664	NM_030251	80283	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.020000	0.547264	
mm_146509.1	chr18	3337313	3337513	-	1	NA	NA	NA	176	NM_001110851	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.160000	0.726368	
mm_131684.1	chr16	20677563	20677763	+	1	NA	NA	NA	4936	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.015000	0.527363	
mm_146888.1	chr18	25753600	25753800	-	1	NA	NA	NA	283	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.055000	0.502488	
mm_11522.1	chr2	32616073	32616273	+	1	NA	NA	NA	-5585	NM_001198790	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.015000	0.407960	
mm_73641.1	chr8	110741096	110741296	+	1	NA	NA	NA	15470	NM_001310591	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.005000	0.388060	
mm_81034.1	chr9	104587963	104588163	+	1	NA	NA	NA	18275	NM_028719	74020	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	0.005000	0.562189	
mm_11407.1	chr2	31515647	31515847	+	1	NA	NA	NA	45439	NR_002687	432466	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.010000	0.522388	
mm_50019.1	chr6	41115913	41116113	+	1	NA	NA	NA	-80504	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.517413	
mm_137592.1	chr17	28079789	28079989	+	1	NA	NA	NA	695	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.065000	0.641791	
mm_29968.1	chr3	133506572	133506772	-	1	NA	NA	NA	37718	NM_001346736	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.010000	0.502488	
mm_136561.1	chr17	3188544	3188744	+	1	NA	NA	NA	73672	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.000000	0.462687	
mm_157129.1	chrX	9446760	9446960	-	1	NA	NA	NA	22464	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.452736	
mm_45865.1	chr5	87929887	87930087	-	1	NA	NA	NA	4354	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.010000	0.482587	
mm_138018.1	chr17	33909533	33909733	+	1	NA	NA	NA	32	NM_001199733	13163	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0.105000	0.691542	
mm_107957.1	chr12	72536269	72536469	+	1	NA	NA	NA	12	NM_026327	67708	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	0.105000	0.711443	
mm_132425.1	chr16	35585241	35585441	+	1	NA	NA	NA	43979	NM_013661	20357	Mm.42015	NM_013661	ENSMUSG00000052133	Sema5b	AI893641|SemG|Semag|mKIAA1445	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	protein-coding	0.010000	0.472637	
mm_37997.1	chr4	133672527	133672727	-	1	NA	NA	NA	20	NM_001145955	230801	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.150000	0.781095	
mm_142684.1	chr17	47733704	47733904	-	1	NA	NA	NA	-3233	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.020000	0.542289	
mm_82952.1	chr9	35569656	35569856	-	1	NA	NA	NA	313	NM_029762	76832	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	hydrolethalus syndrome 1	protein-coding	0.075000	0.646766	
mm_9234.1	chr1	171281087	171281287	-	1	NA	NA	NA	-1	NM_008911	19044	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	0.045000	0.537313	27(GACCCTAAAAGT,-,0.00)
mm_2186.1	chr1	89016020	89016220	+	1	NA	NA	NA	7	NR_040471	73475	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA	0.030000	0.482587	
mm_88010.1	chr10	67119406	67119606	+	1	NA	NA	NA	-7752	NM_207221	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.025000	0.572139	
mm_110729.1	chr12	69758560	69758760	-	1	NA	NA	NA	5284	NR_030450	751538		NR_030450	ENSMUSG00000076065	Mir681	Mirn681|mmu-mir-681	microRNA 681	ncRNA	0.015000	0.477612	-11(CTATTTATAGCA,+,0.00)
mm_13164.1	chr2	92608244	92608444	+	1	NA	NA	NA	8637	NM_023850	76969	Mm.38021	NM_023850	ENSMUSG00000027221	Chst1	2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KSGAL6ST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding	0.035000	0.512438	
mm_94384.1	chr11	5520554	5520754	+	1	NA	NA	NA	13	NM_001271730	22433	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0.055000	0.611940	
mm_92956.1	chr10	85540344	85540544	-	1	NA	NA	NA	-57967	NM_001017525	74007	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.000000	0.308458	
mm_42526.1	chr5	115611747	115611947	+	1	NA	NA	NA	19969	NR_027810	66123	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	0.020000	0.492537	60(TGGTATAAAGGC,-,0.00)
mm_152636.1	chr19	12501760	12501960	-	1	NA	NA	NA	136	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.065000	0.597015	
mm_77015.1	chr8	107682140	107682340	-	1	NA	NA	NA	-93758	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.025000	0.507463	-1(CTTTTTAGACAG,+,0.00)
mm_142470.1	chr17	45610050	45610250	-	1	NA	NA	NA	-8048	NM_001177469	653016	Mm.45676	NM_001177468	ENSMUSG00000079471	Gm7325	EG653016|Esgp	predicted gene 7325	protein-coding	0.000000	0.417910	
mm_378.1	chr1	34011483	34011683	+	1	NA	NA	NA	-242	NM_133833	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.160000	0.815920	
mm_14886.1	chr2	148871877	148872077	+	1	NA	NA	NA	3535	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.010000	0.487562	
mm_146067.1	chr18	70472364	70472564	+	1	NA	NA	NA	10	NM_029019	170461	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	0.135000	0.691542	
mm_4922.1	chr1	190928513	190928713	+	1	NA	NA	NA	108	NR_037579	52477	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	0.105000	0.691542	
mm_51817.1	chr6	88902452	88902652	+	1	NA	NA	NA	301	NM_011906	24100	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.100000	0.686567	
mm_17375.1	chr2	26933335	26933535	-	1	NA	NA	NA	76	NM_011512	20932	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	0.135000	0.771144	-24(GTCCCTTTAAGG,-,0.00),-22(CCCTTTAAGGCT,+,0.00)
mm_147260.1	chr18	38671647	38671847	-	1	NA	NA	NA	-70479	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.000000	0.512438	
mm_44172.1	chr5	150952606	150952806	+	1	NA	NA	NA	99	NM_013823	16591	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.135000	0.756219	-33(GGGCATATAGGG,-,0.00),-31(GCATATAGGGGC,+,0.00)
mm_35860.1	chr4	49480939	49481139	-	1	NA	NA	NA	25519	NM_007519	12012	Mm.2859	NM_007519	ENSMUSG00000039653	Baat	AI118337|AI158864|BAT	bile acid-Coenzyme A: amino acid N-acyltransferase	protein-coding	0.010000	0.502488	
mm_58417.1	chr7	3291399	3291599	+	1	NA	NA	NA	943	NM_001093765	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.015000	0.482587	
mm_24707.1	chr3	95164173	95164373	+	1	NA	NA	NA	-66	NM_011351	20360	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	0.005000	0.606965	
mm_7142.1	chr1	91183381	91183581	-	1	NA	NA	NA	3659	NM_001168392	51801	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	0.040000	0.577114	
mm_105947.1	chr11	115276879	115277079	-	1	NA	NA	NA	-10	NM_007997	14149	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	-	ferredoxin reductase	protein-coding	0.055000	0.597015	
mm_23879.1	chr3	83030873	83031073	+	1	NA	NA	NA	4820	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.020000	0.482587	56(GTTTTAAGAGCC,+,0.00)
mm_103394.1	chr11	75431264	75431464	-	1	NA	NA	NA	8137	NM_008878	18816	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	0.025000	0.587065	
mm_100165.1	chr11	116436896	116437096	+	1	NA	NA	NA	2783	NR_003376	664849	Mm.258466	NR_003376		Gm7367	EG664849	1110014K08Rik pseudogene	pseudo	0.005000	0.606965	
mm_38945.1	chr4	150220611	150220811	-	1	NA	NA	NA	-16486	NM_023119	13806	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	0.010000	0.577114	-37(GAGTTTATAGGC,-,0.00)
mm_150225.1	chr19	33964750	33964950	+	1	NA	NA	NA	3602	NM_026334	67717	Mm.329816	NM_026334	ENSMUSG00000024768	Lipf	2310051B21Rik|AV082900	lipase, gastric	protein-coding	0.010000	0.393035	
mm_103875.1	chr11	83526409	83526609	-	1	NA	NA	NA	4009	NM_013653	20304	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.005000	0.452736	
mm_142904.1	chr17	52306522	52306722	-	1	NA	NA	NA	-296087	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.015000	0.477612	
mm_93823.1	chr10	121476187	121476387	-	1	NA	NA	NA	-37	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.110000	0.766169	
mm_75948.1	chr8	71592348	71592548	-	1	NA	NA	NA	264	NM_001294269	66171	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	0.145000	0.736318	
mm_113828.1	chr13	47066297	47066497	+	1	NA	NA	NA	22898	NM_172262	218214	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	0.010000	0.512438	-14(CTCCATTTAAGG,-,0.00)
mm_108978.1	chr12	102743630	102743830	+	1	NA	NA	NA	18	NM_001324515	320351	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	0.120000	0.706468	
mm_130903.1	chr15	102405595	102405795	-	1	NA	NA	NA	-621	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.065000	0.592040	
mm_23462.1	chr3	60472712	60472912	+	1	NA	NA	NA	-18	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.015000	0.378109	
mm_107960.1	chr12	72664951	72665151	+	1	NA	NA	NA	-223	NM_025522	66375	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.035000	0.527363	
mm_171260.1	chr3	83880713	83880913	+	1	NA	NA	NA	-39205	NM_011905	24088	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.015000	0.462687	-30(GCTTATATAAGG,+,0.00),-30(GCTTATATAAGG,-,0.00)
mm_134953.1	chr16	31303425	31303625	-	1	NA	NA	NA	11283	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.030000	0.482587	
mm_78374.1	chr9	27397112	27397312	+	1	NA	NA	NA	0	NM_001305058	75469	Mm.45824	NM_029299	ENSMUSG00000031991	Spata19	1700001L23Rik|AV047838|spergen-1	spermatogenesis associated 19	protein-coding	0.015000	0.412935	
mm_96010.1	chr11	59542614	59542814	+	1	NA	NA	NA	28	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.015000	0.467662	
mm_113465.1	chr13	36117822	36118022	+	1	NA	NA	NA	279	NM_001039189	69955	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.105000	0.661692	
mm_170107.1	chr17	39844654	39844854	+	1	NA	NA	NA	1757	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.125000	0.721393	
mm_86594.1	chr10	13129941	13130141	+	1	NA	NA	NA	39196	NR_131912	338438		NR_131912		Hymai	-	hydatidiform mole associated and imprinted transcript	ncRNA	0.000000	0.273632	
mm_169129.1	chr13	58218586	58218786	+	1	NA	NA	NA	-3033	NM_026842	56085	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	0.005000	0.482587	
mm_129998.1	chr15	86185945	86186145	-	1	NA	NA	NA	96	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.070000	0.696517	
mm_67737.1	chr7	90131129	90131329	-	1	NA	NA	NA	997	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.015000	0.363184	
mm_172359.1	chr7	116598460	116598660	-	1	NA	NA	NA	94191	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.025000	0.437811	
mm_165735.1	chr3	106788440	106788640	+	1	NA	NA	NA	1609	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.005000	0.427861	
mm_127147.1	chr15	98534418	98534618	+	1	NA	NA	NA	-249	NM_001289440	69612	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	0.065000	0.567164	
mm_58597.1	chr7	5020521	5020721	+	1	NA	NA	NA	245	NM_001033383	319748	Mm.86607	NM_001033383	ENSMUSG00000074405	Zfp865	6430526N21Rik|Znf865	zinc finger protein 865	protein-coding	0.100000	0.781095	
mm_140307.1	chr17	85691083	85691283	+	1	NA	NA	NA	-2929	NM_011380	20472	Mm.5039	NM_011380	ENSMUSG00000024134	Six2	-	sine oculis-related homeobox 2	protein-coding	0.015000	0.547264	
mm_115315.1	chr13	112363357	112363557	+	1	NA	NA	NA	74939	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.030000	0.592040	
mm_16407.1	chr2	180041625	180041825	+	1	NA	NA	NA	739	NM_001289476	26444	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	0.050000	0.502488	
mm_152587.1	chr19	11604641	11604841	-	1	NA	NA	NA	63	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.010000	0.497512	
mm_127371.1	chr15	100780145	100780345	+	1	NA	NA	NA	-1009	NM_001347102	59033	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0.025000	0.552239	
mm_74238.1	chr8	124576016	124576216	+	1	NA	NA	NA	5	NM_023709	73647	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	0.020000	0.611940	
mm_101755.1	chr11	43385050	43385250	-	1	NA	NA	NA	-10689	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.020000	0.542289	
mm_69314.1	chr7	128440575	128440775	-	1	NA	NA	NA	20838	NM_009383	21843	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.005000	0.313433	0(GTTTTTAAACAC,+,0.00)
mm_59736.1	chr7	28813822	28814022	+	1	NA	NA	NA	3032	NM_177301	15388	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.035000	0.527363	
mm_118745.1	chr14	22320579	22320779	+	1	NA	NA	NA	222119	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.000000	0.432836	
mm_133643.1	chr16	91739178	91739378	+	1	NA	NA	NA	9907	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.010000	0.497512	
mm_58332.1	chr6	146577732	146577932	-	1	NA	NA	NA	3	NM_138757	71177	Mm.271774	NM_138757	ENSMUSG00000040250	Asun	4933424B01Rik|Spata30	asunder, spermatogenesis regulator	protein-coding	0.090000	0.671642	
mm_47670.1	chr5	127617299	127617499	-	1	NA	NA	NA	-7	NM_133895	100561	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.135000	0.716418	
mm_120881.1	chr14	75323749	75323949	+	1	NA	NA	NA	39476	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0.020000	0.407960	14(TGCCTGAAAAGG,-,0.00)
mm_126993.1	chr15	94629054	94629254	+	1	NA	NA	NA	-31	NM_178789	320709	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0.180000	0.805970	60(GTATTTATAGCC,+,0.00)
mm_134711.1	chr16	22894332	22894532	-	1	NA	NA	NA	-46	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.015000	0.577114	
mm_37193.1	chr4	117496814	117497014	-	1	NA	NA	NA	138	NM_025739	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.060000	0.616915	
mm_40669.1	chr5	65392545	65392745	+	1	NA	NA	NA	1148	NM_001310612	79464	Mm.195776	NM_024471	ENSMUSG00000029199	Lias	2900022L22Rik|4933425M12Rik|7a5ex|C77512|LS|lip-syn	lipoic acid synthetase	protein-coding	0.000000	0.358209	
mm_773.1	chr1	44211626	44211826	+	1	NA	NA	NA	7205	NM_207281	403183	Mm.336176	NM_207281	ENSMUSG00000046828	Mettl21e	4832428D23Rik|Gm991	methyltransferase like 21E	protein-coding	0.010000	0.398010	-21(TCCTATAAAAAG,-,0.00)
mm_159878.1	chr6	5383187	5383387	+	1	NA	NA	NA	-99	NM_023048	65255	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0.020000	0.407960	-100(TCTTAAAAAGAC,+,0.00)
mm_168440.1	chr11	37752336	37752536	+	1	NA	NA	NA	93447	NR_131154	100039148	Mm.120467	NR_131154	ENSMUSG00000087388	Gm12128	OTTMUSG00000005422	predicted gene 12128	ncRNA	0.030000	0.422886	
mm_58739.1	chr7	13030860	13031060	+	1	NA	NA	NA	3817	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.005000	0.512438	
mm_28557.1	chr3	93433851	93434051	-	1	NA	NA	NA	5460	NR_039585	100628630		NR_039585	ENSMUSG00000093269	Mir5124a	Mir5124|mmu-mir-5124|mmu-mir-5124a|mu-mir-5124	microRNA 5124a	ncRNA	0.025000	0.457711	
mm_1612.1	chr1	74391347	74391547	+	1	NA	NA	NA	-162	NM_153088	227292	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.115000	0.726368	
mm_75114.1	chr8	34260451	34260651	-	1	NA	NA	NA	-93839	NR_105820	102465211		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	0.010000	0.492537	
mm_170824.1	chr2	176708216	176708416	+	1	NA	NA	NA	-37	NM_001099327	100043387	Mm.444048	NM_001099327	ENSMUSG00000078878	Gm14305	OTTMUSG00000016251	predicted gene 14305	protein-coding	0.015000	0.502488	
mm_144410.1	chr18	20961345	20961545	+	1	NA	NA	NA	16820	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.125000	0.686567	
mm_1735.1	chr1	75400080	75400280	+	1	NA	NA	NA	95	NM_001173477	11790	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0.025000	0.666667	
mm_107978.1	chr12	72945583	72945783	+	1	NA	NA	NA	5801	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	0.140000	0.791045	
mm_119281.1	chr14	34319782	34319982	+	1	NA	NA	NA	9155	NM_008133	14661	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	0.025000	0.437811	
mm_8400.1	chr1	151500718	151500918	-	1	NA	NA	NA	5	NM_011277	19821	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0.105000	0.691542	
mm_99597.1	chr11	104329863	104330063	+	1	NA	NA	NA	98527	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.025000	0.517413	
mm_92240.1	chr10	69556356	69556556	-	1	NA	NA	NA	22748	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.045000	0.582090	
mm_100246.1	chr11	117277296	117277496	+	1	NA	NA	NA	11150	NM_001113487	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.010000	0.482587	
mm_100129.1	chr11	115971154	115971354	+	1	NA	NA	NA	-3471	NM_001005608	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.015000	0.522388	
mm_145180.1	chr18	47331365	47331565	+	1	NA	NA	NA	37403	NM_018744	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.010000	0.512438	
mm_31525.1	chr4	54947926	54948126	+	1	NA	NA	NA	81	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.025000	0.562189	
mm_63173.1	chr7	125368856	125369056	+	1	NA	NA	NA	95	NM_001145759	75861	Mm.349600	NM_001145759		4930571K23Rik	AI428146	RIKEN cDNA 4930571K23 gene	protein-coding	0.005000	0.562189	
mm_39081.1	chr4	154361246	154361446	-	1	NA	NA	NA	-61451	NM_001112744	230972	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.020000	0.383085	-98(GTTTTTATAACC,+,0.00)
mm_35339.1	chr4	31998640	31998840	-	1	NA	NA	NA	34633	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.025000	0.407960	
mm_111165.1	chr12	83590810	83591010	-	1	NA	NA	NA	6237	NM_183154	217695	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0.000000	0.333333	
mm_22451.1	chr2	181864116	181864316	-	1	NA	NA	NA	-144	NM_025901	67005	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	0.050000	0.582090	
mm_531.1	chr1	37886262	37886462	+	1	NA	NA	NA	4049	NM_026913	69028	Mm.63984	NM_026913	ENSMUSG00000026088	Mitd1	1500032H18Rik	MIT, microtubule interacting and transport, domain containing 1	protein-coding	0.025000	0.462687	
mm_178.1	chr1	13668921	13669121	+	1	NA	NA	NA	250	NM_001011873	381246	Mm.311142	NM_001011873	ENSMUSG00000067813	Xkr9	Gm1620|XRG9	X-linked Kx blood group related 9	protein-coding	0.020000	0.388060	
mm_61898.1	chr7	90129413	90129613	+	1	NA	NA	NA	-39	NR_046006	78329	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	0.035000	0.437811	
mm_162131.1	chrX	73148679	73148879	+	1	NA	NA	NA	-62	NM_001111293	627081	Mm.255790	NM_001111293	ENSMUSG00000072479	Xlr5b	OTTMUSG00000017646	X-linked lymphocyte-regulated 5B	protein-coding	0.055000	0.601990	
mm_17949.1	chr2	36136730	36136930	-	1	NA	NA	NA	-126	NR_027515	67889	Mm.205937	NM_026434	ENSMUSG00000026889	Rbm18	2010004P11Rik|AU015530	RNA binding motif protein 18	protein-coding	0.050000	0.592040	
mm_126710.1	chr15	85239225	85239425	+	1	NA	NA	NA	33317	NM_010180	14114	Mm.297992	NM_010180	ENSMUSG00000006369	Fbln1	-	fibulin 1	protein-coding	0.060000	0.621891	
mm_41141.1	chr5	87887406	87887606	+	1	NA	NA	NA	1811	NM_027128	69592	Mm.389652	NM_027128	ENSMUSG00000009580	Odam	2310011G06Rik|APIN	odontogenic, ameloblast asssociated	protein-coding	0.000000	0.512438	
mm_28259.1	chr3	88570430	88570630	-	1	NA	NA	NA	-9141	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.015000	0.442786	
mm_28111.1	chr3	86548514	86548714	-	1	NA	NA	NA	-331	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.020000	0.512438	
mm_50316.1	chr6	47877576	47877776	+	1	NA	NA	NA	121	NM_146175	101095	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	0.055000	0.671642	
mm_46843.1	chr5	113412974	113413174	-	1	NA	NA	NA	55780	NM_001012726	503692	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	0.000000	0.462687	
mm_38258.1	chr4	136835875	136836075	-	1	NA	NA	NA	37	NM_001290753	13844	Mm.250981	NM_010142	ENSMUSG00000028664	Ephb2	Cek5|Drt|ETECK|Erk|Hek5|Nuk|Prkm5|Qek5|Sek3|Tyro5	Eph receptor B2	protein-coding	0.145000	0.805970	
mm_10664.1	chr2	20765748	20765948	+	1	NA	NA	NA	201873	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.000000	0.363184	
mm_111534.1	chr12	100744864	100745064	-	1	NA	NA	NA	-19844	NM_153587	73086	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0.055000	0.522388	
mm_140117.1	chr17	78916559	78916759	+	1	NA	NA	NA	160	NM_001177402	68554	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	0.110000	0.701493	
mm_40203.1	chr5	37028253	37028453	+	1	NA	NA	NA	-22504	NM_178394	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0.130000	0.691542	
mm_137670.1	chr17	28769252	28769452	+	1	NA	NA	NA	35	NM_011950	26415	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.125000	0.761194	
mm_97808.1	chr11	82961622	82961822	+	1	NA	NA	NA	-1041	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.005000	0.422886	
mm_21381.1	chr2	157447848	157448048	-	1	NA	NA	NA	23655	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.000000	0.492537	-33(TCCCTTAAAAGG,-,0.00),-32(CCCTTAAAAGGG,+,0.00),-31(CCTTAAAAGGGC,+,0.00)
mm_101944.1	chr11	50210691	50210891	-	1	NA	NA	NA	29	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.110000	0.676617	-75(GCTCATAGAGGC,+,0.00),-33(TTCTATAAAAGC,-,0.00)
mm_28655.1	chr3	95232063	95232263	-	1	NA	NA	NA	3220	NM_001038708	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.015000	0.507463	
mm_24858.1	chr3	95882665	95882865	+	1	NA	NA	NA	-537	NM_001033302	229599	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	0.090000	0.676617	
mm_78152.1	chr9	21017752	21017952	+	1	NA	NA	NA	1912	NM_010493	15894	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0.015000	0.507463	
mm_71225.1	chr8	40902409	40902609	+	1	NA	NA	NA	-23724	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.000000	0.402985	
mm_27995.1	chr3	82547945	82548145	-	1	NA	NA	NA	40	NM_008731	18167	Mm.1433	NM_008731	ENSMUSG00000028004	Npy2r	NPY2-R	neuropeptide Y receptor Y2	protein-coding	0.055000	0.606965	
mm_59769.1	chr7	28833957	28834157	+	1	NA	NA	NA	-113	NM_010707	16857	Mm.210336	NM_010707		Lgals6	galectin-6	lectin, galactose binding, soluble 6	protein-coding	0.000000	0.572139	-64(GGCCCTAAGAGG,-,0.00)
mm_20982.1	chr2	151974110	151974310	-	1	NA	NA	NA	-229	NM_028666	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.040000	0.537313	
mm_45750.1	chr5	86676258	86676458	-	1	NA	NA	NA	-60	NM_177024	319875	Mm.253994	NM_177024	ENSMUSG00000035861	Tmprss11b	9930019B18Rik|Tmprss11bnl	transmembrane protease, serine 11B	protein-coding	0.015000	0.383085	
mm_21428.1	chr2	158258854	158259054	-	1	NA	NA	NA	713	NM_177850	329547	Mm.260883	NM_177850	ENSMUSG00000052922	Bpi	9230105K17Rik|Bpifd1	bactericidal permeablility increasing protein	protein-coding	0.025000	0.592040	
mm_90116.1	chr10	117277782	117277982	+	1	NA	NA	NA	4390	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.005000	0.462687	
mm_54077.1	chr6	14755209	14755409	-	1	NA	NA	NA	-35	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	0.005000	0.412935	-65(CTATTTATAGAG,+,0.00)
mm_968.1	chr1	58183399	58183599	+	1	NA	NA	NA	-26898	NM_023631	71872	Mm.244525	NM_023631	ENSMUSG00000038242	Aox4	2310003G12Rik|Aoh2	aldehyde oxidase 4	protein-coding	0.005000	0.477612	
mm_157257.1	chrX	19153788	19153988	-	1	NA	NA	NA	-6917	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.010000	0.482587	
mm_44497.1	chr5	23684550	23684750	-	1	NA	NA	NA	28017	NR_038090	433855	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	0.000000	0.442786	-15(GGTCATAAAAGG,-,0.00)
mm_141450.1	chr17	30135281	30135481	-	1	NA	NA	NA	121154	NR_105839	102465223		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0.025000	0.437811	
mm_7868.1	chr1	132634592	132634792	-	1	NA	NA	NA	8166	NM_001160316	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	0.040000	0.587065	
mm_92630.1	chr10	80323027	80323227	-	1	NA	NA	NA	-2579	NM_025521	66374	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.095000	0.681592	
mm_115409.1	chr13	114803193	114803393	+	1	NA	NA	NA	-14944	NM_013826	17434	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.005000	0.383085	
mm_35006.1	chr4	3089478	3089678	-	1	NA	NA	NA	-82505	NM_001167534	100312470	Mm.480297	NM_001167534	ENSMUSG00000094798	Vmn1r2	Gm11776|OTTMUSG00000004179	vomeronasal 1 receptor 2	protein-coding	0.005000	0.412935	
mm_2703.1	chr1	127978274	127978474	+	1	NA	NA	NA	109601	NM_178690	226407	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0.000000	0.442786	
mm_108326.1	chr12	79770341	79770541	+	1	NA	NA	NA	154292	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.005000	0.303483	58(CCTTATCAGGGC,+,0.00)
mm_160198.1	chr7	79702730	79702930	-	1	NA	NA	NA	11356	NM_010626	16576	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0.070000	0.631841	
mm_152957.1	chr19	29325242	29325442	-	1	NA	NA	NA	-24	NM_013754	27356	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding	0.095000	0.721393	
mm_86855.1	chr10	21827150	21827350	+	1	NA	NA	NA	-54934	NM_001161845	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.000000	0.308458	
mm_102153.1	chr11	53683218	53683418	-	1	NA	NA	NA	24001	NM_009012	19360	Mm.4888	NM_009012	ENSMUSG00000020380	Rad50	Mrell|Rad50l	RAD50 double strand break repair protein	protein-coding	0.030000	0.482587	
mm_97830.1	chr11	83064350	83064550	+	1	NA	NA	NA	-662	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.000000	0.472637	
mm_69536.1	chr7	135694996	135695196	-	1	NA	NA	NA	21283	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.005000	0.482587	
mm_23712.1	chr3	69004621	69004821	+	1	NA	NA	NA	-151	NM_026641	68259	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	0.025000	0.457711	
mm_13898.1	chr2	120460920	120461120	+	1	NA	NA	NA	-2573	NM_001177799	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.015000	0.527363	
mm_6929.1	chr1	84891806	84892006	-	1	NA	NA	NA	43177	NM_027921	71781	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.025000	0.542289	
mm_115488.1	chr13	3610926	3611126	-	1	NA	NA	NA	82	NM_134063	105203	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	0.110000	0.651741	
mm_51220.1	chr6	71369642	71369842	+	1	NA	NA	NA	-3685	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.015000	0.517413	
mm_40430.1	chr5	53588660	53588860	+	1	NA	NA	NA	-1586	NM_009035	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.035000	0.442786	-63(TTCCTTTAAAGG,-,0.00),-62(TCCTTTAAAGGC,+,0.00),-62(TCCTTTAAAGGC,-,0.00),-61(CCTTTAAAGGCT,+,0.00),66(CACTATAAAGGA,-,0.00)
mm_24225.1	chr3	88716795	88716995	+	1	NA	NA	NA	41	NM_001163310	19769	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	0.075000	0.706468	
mm_34146.1	chr4	139352505	139352705	+	1	NA	NA	NA	18	NM_146157	230866	Mm.394288	NM_146157	ENSMUSG00000078517	Emc1	2700016F22Rik	ER membrane protein complex subunit 1	protein-coding	0.090000	0.676617	
mm_96074.1	chr11	59848066	59848266	+	1	NA	NA	NA	93	NM_134029	103850	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	0.155000	0.771144	
mm_22090.1	chr2	168767098	168767298	-	1	NA	NA	NA	3	NM_201395	99377	Mm.434054	NM_175303	ENSMUSG00000027547	Sall4	5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20	sal-like 4 (Drosophila)	protein-coding	0.030000	0.477612	
mm_89946.1	chr10	111282062	111282262	+	1	NA	NA	NA	-16517	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.010000	0.417910	
mm_155540.1	chrX	74304999	74305199	+	1	NA	NA	NA	87	NM_010273	14567	Mm.205830	NM_010273	ENSMUSG00000015291	Gdi1	GDIA|GDIalpha	guanosine diphosphate (GDP) dissociation inhibitor 1	protein-coding	0.055000	0.626866	
mm_127583.1	chr15	102326278	102326478	+	1	NA	NA	NA	262	NM_027044	56612	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	0.070000	0.626866	
mm_57387.1	chr6	124829325	124829525	-	1	NA	NA	NA	59	NM_001326594	22225	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	0.095000	0.631841	
mm_24535.1	chr3	93279430	93279630	+	1	NA	NA	NA	-40219	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.015000	0.412935	
mm_85364.1	chr9	103219759	103219959	-	1	NA	NA	NA	10427	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.020000	0.512438	
mm_160481.1	chr8	123349981	123350181	+	1	NA	NA	NA	17368	NM_172287	234857	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire homolog 2 (Drosophila)	protein-coding	0.005000	0.437811	
mm_32776.1	chr4	116699935	116700135	+	1	NA	NA	NA	8350	NM_025962	67096	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0.000000	0.407960	
mm_27014.1	chr3	26027035	26027235	-	1	NA	NA	NA	126172	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.373134	
mm_172627.1	chr8	20397970	20398170	-	1	NA	NA	NA	26744	NR_028428	381598	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	0.005000	0.407960	
mm_8088.1	chr1	135679149	135679349	-	1	NA	NA	NA	-49948	NM_007791	13007	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.015000	0.537313	
mm_69327.1	chr7	128717363	128717563	-	1	NA	NA	NA	22966	NM_145955	210711	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0.015000	0.378109	
mm_60499.1	chr7	44478836	44479036	+	1	NA	NA	NA	-5581	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.393035	
mm_18061.1	chr2	41081845	41082045	-	1	NA	NA	NA	1365623	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.000000	0.303483	
mm_125234.1	chr15	34142983	34143183	+	1	NA	NA	NA	60364	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.005000	0.398010	
mm_113433.1	chr13	34875402	34875602	+	1	NA	NA	NA	8	NM_013830	19134	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	0.110000	0.636816	
mm_84249.1	chr9	62377501	62377701	-	1	NA	NA	NA	36258	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.035000	0.502488	
mm_41609.1	chr5	96657025	96657225	+	1	NA	NA	NA	-136260	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.025000	0.442786	
mm_83758.1	chr9	51945745	51945945	-	1	NA	NA	NA	17757	NM_007996	14148	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	0.005000	0.398010	
mm_20582.1	chr2	131148328	131148528	-	1	NA	NA	NA	11592	NM_026091	67326	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	0.015000	0.606965	
mm_120350.1	chr14	63943577	63943777	+	1	NA	NA	NA	-29	NM_011446	20680	Mm.42162	NM_011446	ENSMUSG00000063060	Sox7	-	SRY (sex determining region Y)-box 7	protein-coding	0.115000	0.721393	
mm_159063.1	chr2	18055513	18055713	+	1	NA	NA	NA	376	NM_010804	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.020000	0.437811	
mm_160222.1	chr7	101450477	101450677	+	1	NA	NA	NA	57	NM_001243758	207728	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.060000	0.646766	
mm_120169.1	chr14	60768029	60768229	+	1	NA	NA	NA	-5	NM_183175	239126	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	0.015000	0.512438	
mm_67829.1	chr7	98350841	98351041	-	1	NA	NA	NA	10347	NM_001168540	244152	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.005000	0.432836	
mm_46890.1	chr5	113988646	113988846	-	1	NA	NA	NA	5011	NM_198109	231637	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot homolog 1 (Drosophila)	protein-coding	0.000000	0.417910	
mm_94224.1	chr11	3223281	3223481	+	1	NA	NA	NA	20362	NM_001166549	74203	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0.020000	0.383085	
mm_89352.1	chr10	88162085	88162285	+	1	NA	NA	NA	15114	NM_028334	69736	Mm.222184	NM_027191	ENSMUSG00000035351	Nup37	2410003L22Rik|2810039M17Rik	nucleoporin 37	protein-coding	0.005000	0.343284	
mm_129770.1	chr15	82764084	82764284	-	1	NA	NA	NA	-62	NM_023623	71754	Mm.443024	NM_023623	ENSMUSG00000068083	Cyp2d40	1300013D18Rik|CYPIID3|P450-DB3	cytochrome P450, family 2, subfamily d, polypeptide 40	protein-coding	0.000000	0.532338	-32(TCCTTTATAAGG,-,0.00),-30(CTTTATAAGGTG,+,0.00)
mm_127609.1	chr15	102459107	102459307	+	1	NA	NA	NA	37	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.030000	0.522388	
mm_56374.1	chr6	94159691	94159891	-	1	NA	NA	NA	77651	NR_130996	78178	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0.005000	0.393035	
mm_158606.1	chrX	152342307	152342507	-	1	NA	NA	NA	77	NM_029836	52808	Mm.9997	NM_029836	ENSMUSG00000041096	Tspyl2	CDA1|CINAP|DENTT|DXBwg1396e|DXHXS1008E|E130307F10Rik	TSPY-like 2	protein-coding	0.080000	0.681592	
mm_46475.1	chr5	105131348	105131548	-	1	NA	NA	NA	8104	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.432836	
mm_120019.1	chr14	55761293	55761493	+	1	NA	NA	NA	-35	NM_020490	57260	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	0.010000	0.587065	
mm_83438.1	chr9	44999191	44999391	-	1	NA	NA	NA	10299	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.010000	0.557214	
mm_158129.1	chrX	102934093	102934293	-	1	NA	NA	NA	30	NR_026596	331480	Mm.145294	NR_026596		Gm5126	EG331480	predicted pseudogene 5126	ncRNA	0.100000	0.791045	
mm_66761.1	chr7	46728602	46728802	-	1	NA	NA	NA	3901	NM_011316	20211	Mm.3489	NM_011316	ENSMUSG00000040017	Saa4	Saa-4|Saa-5	serum amyloid A 4	protein-coding	0.000000	0.492537	
mm_36250.1	chr4	63403240	63403440	-	1	NA	NA	NA	105	NM_001045514	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.020000	0.646766	
mm_140309.1	chr17	86167507	86167707	+	1	NA	NA	NA	-178	NM_011104	18754	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0.110000	0.616915	
mm_6325.1	chr1	71609426	71609626	-	1	NA	NA	NA	43708	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.070000	0.606965	
mm_135791.1	chr16	57175543	57175743	-	1	NA	NA	NA	-8311	NM_023175	52633	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.015000	0.567164	
mm_40465.1	chr5	53647046	53647246	+	1	NA	NA	NA	51442	NR_024201	19866		NR_024201	ENSMUSG00000089083	Rnu7	-	U7 small nuclear RNA	snRNA	0.030000	0.557214	
mm_135587.1	chr16	50590966	50591166	-	1	NA	NA	NA	88	NM_027046	69339	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	0.010000	0.447761	
mm_69442.1	chr7	132984058	132984258	-	1	NA	NA	NA	31089	NM_001170744	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.005000	0.308458	
mm_61990.1	chr7	91090820	91091020	+	1	NA	NA	NA	134	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.025000	0.502488	
mm_168575.1	chr1	17135442	17135642	+	1	NA	NA	NA	-9831	NM_010267	14545	Mm.18218	NM_010267	ENSMUSG00000025777	Gdap1	-	ganglioside-induced differentiation-associated-protein 1	protein-coding	0.025000	0.507463	-31(GAGTATATAAGA,-,0.00)
mm_49770.1	chr6	34866268	34866468	+	1	NA	NA	NA	3222	NM_197986	68487	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.000000	0.422886	
mm_8540.1	chr1	155084057	155084257	-	1	NA	NA	NA	15479	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.025000	0.447761	
mm_121892.1	chr14	21742814	21743014	-	1	NA	NA	NA	-35	NM_013849	27389	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.005000	0.562189	
mm_81447.1	chr9	109816444	109816644	+	1	NA	NA	NA	-83	NM_183136	78709	Mm.99613	NM_183136	ENSMUSG00000050074	Spink8	C630041L24Rik	serine peptidase inhibitor, Kazal type 8	protein-coding	0.025000	0.482587	
mm_113894.1	chr13	49193789	49193989	+	1	NA	NA	NA	6342	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.060000	0.601990	
mm_163416.1	chr12	79253192	79253392	-	1	NA	NA	NA	42990	NM_001008550	211978	Mm.297919	NM_001008550	ENSMUSG00000066440	Zfyve26	4930465A13|9330197E15Rik|A630028O16Rik|Gm893|mKIAA0321	zinc finger, FYVE domain containing 26	protein-coding	0.005000	0.398010	
mm_59436.1	chr7	27131136	27131336	+	1	NA	NA	NA	11281	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.070000	0.572139	
mm_86876.1	chr10	21996974	21997174	+	1	NA	NA	NA	2408	NM_011361	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.025000	0.502488	
mm_94216.1	chr11	3163878	3164078	+	1	NA	NA	NA	29485	NM_030207	78887	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.015000	0.452736	
mm_10230.1	chr2	6342566	6342766	+	1	NA	NA	NA	-10070	NM_181399	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.030000	0.467662	
mm_22309.1	chr2	180386695	180386895	-	1	NA	NA	NA	-910	NR_040745	320485	Mm.405172	NR_040745		B230312C02Rik	-	RIKEN cDNA B230312C02 gene	ncRNA	0.015000	0.611940	
mm_109861.1	chr12	4874254	4874454	-	1	NA	NA	NA	5	NM_001033488	432628	Mm.154078	NM_001033488	ENSMUSG00000037336	Mfsd2b	Gm1964	major facilitator superfamily domain containing 2B	protein-coding	0.065000	0.676617	
mm_123665.1	chr14	69244523	69244723	-	1	NA	NA	NA	40480	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.025000	0.562189	
mm_163425.1	chr12	82073288	82073488	+	1	NA	NA	NA	-96628	NM_001167983	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.005000	0.477612	
mm_172290.1	chr6	95657961	95658161	+	1	NA	NA	NA	34821	NM_001326558	20917	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding	0.050000	0.542289	
mm_63578.1	chr7	128117892	128118092	+	1	NA	NA	NA	-11576	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.020000	0.417910	
mm_8769.1	chr1	160842549	160842749	-	1	NA	NA	NA	-49711	NM_013862	29809	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0.010000	0.472637	-6(ACCTTTAGAGGC,+,0.00)
mm_165908.1	chr4	56419675	56419875	+	1	NA	NA	NA	321650	NM_025271	11471	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Tact1	actin-like 7b	protein-coding	0.010000	0.417910	
mm_93545.1	chr10	116098544	116098744	-	1	NA	NA	NA	15273	NM_001161855	619332	Mm.391427	NM_001033821	ENSMUSG00000074734	4933416C03Rik	-	RIKEN cDNA 4933416C03 gene	protein-coding	0.010000	0.542289	-33(GCTTTTAAGCTG,+,0.00)
mm_151085.1	chr19	47625279	47625479	+	1	NA	NA	NA	45360	NM_001164639	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0.030000	0.437811	
mm_92863.1	chr10	81597515	81597715	-	1	NA	NA	NA	3285	NM_053254	114606	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0.010000	0.636816	
mm_53689.1	chr6	142413284	142413484	+	1	NA	NA	NA	-47	NM_001242345	319552	Mm.39649	NM_001242345	ENSMUSG00000071112	Spx	B230216G23Rik|Npq	spexin hormone	protein-coding	0.030000	0.517413	-27(GTTTTTAAAGCC,+,0.00)
mm_133008.1	chr16	55973787	55973987	+	1	NA	NA	NA	83	NM_173026	271377	Mm.282814	NM_173026	ENSMUSG00000022601	Zbtb11	9230110G02Rik|ZNF-U69274	zinc finger and BTB domain containing 11	protein-coding	0.135000	0.726368	
mm_61178.1	chr7	60145342	60145542	+	1	NA	NA	NA	-5223	NM_001082962	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding	0.000000	0.318408	
mm_66406.1	chr7	44478335	44478535	-	1	NA	NA	NA	-6082	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.477612	
mm_38027.1	chr4	133865227	133865427	-	1	NA	NA	NA	9404	NM_001285506	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.010000	0.557214	
mm_84139.1	chr9	59284103	59284303	-	1	NA	NA	NA	-7369	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.030000	0.502488	
mm_61466.1	chr7	75610556	75610756	+	1	NA	NA	NA	155122	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.025000	0.552239	
mm_12674.1	chr2	75777084	75777284	+	1	NA	NA	NA	-54993	NM_172666	228061	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.020000	0.552239	30(GGTTTTATAAAG,-,0.00),32(TTTTATAAAGAG,+,0.00)
mm_49284.1	chr6	17648430	17648630	+	1	NA	NA	NA	11432	NM_007604	12343	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.010000	0.283582	69(ACCTTTAAAAAC,-,0.00),70(CCTTTAAAAACA,+,0.00)
mm_49162.1	chr6	13838590	13838790	+	1	NA	NA	NA	1252	NM_001330666	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.110000	0.661692	
mm_154299.1	chr19	61224744	61224944	-	1	NA	NA	NA	3574	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.040000	0.532338	
mm_58828.1	chr7	16748998	16749198	+	1	NA	NA	NA	10654	NM_198613	232910	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	0.020000	0.706468	
mm_171134.1	chr3	148901422	148901622	+	1	NA	NA	NA	53113	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.000000	0.388060	-55(AACCTTAAAAGA,-,0.00),-53(CCTTAAAAGAGC,+,0.00)
mm_128317.1	chr15	37968355	37968555	-	1	NA	NA	NA	-7400	NM_199476	382985	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.010000	0.388060	-91(ACCTATTAAAAC,-,0.00)
mm_44869.1	chr5	34504362	34504562	-	1	NA	NA	NA	9517	NM_139064	231130	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0.000000	0.393035	
mm_102479.1	chr11	60099909	60100109	-	1	NA	NA	NA	-5004	NM_009021	19377	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.005000	0.552239	
mm_94410.1	chr11	5800066	5800266	+	1	NA	NA	NA	3630	NM_018870	56012	Mm.219627	NM_018870	ENSMUSG00000020475	Pgam2	-	phosphoglycerate mutase 2	protein-coding	0.010000	0.552239	
mm_64227.1	chr7	141690241	141690441	+	1	NA	NA	NA	1	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.040000	0.626866	
mm_101763.1	chr11	43601459	43601659	-	1	NA	NA	NA	3	NM_008375	16204	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0.010000	0.522388	-35(GTGTTTATAAGC,-,0.00)
mm_118170.1	chr13	105299662	105299862	-	1	NA	NA	NA	-6748	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.010000	0.398010	
mm_3619.1	chr1	152682898	152683098	+	1	NA	NA	NA	-57781	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.005000	0.542289	
mm_137295.1	chr17	24779692	24779892	+	1	NA	NA	NA	-24590	NM_029197	75178	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	0.015000	0.507463	
mm_164557.1	chr17	14942973	14943173	-	1	NA	NA	NA	51	NM_175173	71682	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	0.090000	0.651741	
mm_29231.1	chr3	107213375	107213575	-	1	NA	NA	NA	8257	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.497512	
mm_131308.1	chr16	11461754	11461954	+	1	NA	NA	NA	56206	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.025000	0.507463	
mm_57506.1	chr6	125460562	125460762	-	1	NA	NA	NA	34093	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.040000	0.512438	
mm_115172.1	chr13	108046315	108046515	+	1	NA	NA	NA	1941	NM_001048250	75616	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	0.015000	0.407960	
mm_42194.1	chr5	112276665	112276865	+	1	NA	NA	NA	74	NM_009419	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.155000	0.781095	
mm_63057.1	chr7	121981654	121981854	+	1	NA	NA	NA	-61	NM_001033318	233824	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0.115000	0.557214	
mm_126233.1	chr15	78959852	78960052	+	1	NA	NA	NA	12228	NM_001039155	110253	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.030000	0.597015	
mm_155391.1	chrX	71962892	71963092	+	1	NA	NA	NA	10	NM_001081135	208748	Mm.25626	NM_001081135	ENSMUSG00000033361	Prrg3	Gm368	proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)	protein-coding	0.075000	0.716418	
mm_142856.1	chr17	51812241	51812441	-	1	NA	NA	NA	-287	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.045000	0.532338	
mm_23724.1	chr3	69015998	69016198	+	1	NA	NA	NA	6196	NR_029735	723949		NR_029735	ENSMUSG00000065606	Mir16-2	Mirn16-2|mir-16-2	microRNA 16-2	ncRNA	0.005000	0.398010	-16(CTCTCTTAAAGG,-,0.00),-15(TCTCTTAAAGGG,+,0.00)
mm_130058.1	chr15	89180719	89180919	-	1	NA	NA	NA	-31	NM_138749	140570	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.115000	0.761194	
mm_115090.1	chr13	102706448	102706648	+	1	NA	NA	NA	12990	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.000000	0.457711	
mm_23585.1	chr3	63976022	63976222	+	1	NA	NA	NA	-21	NM_001033300	229363	Mm.331051	NM_001033300	ENSMUSG00000027823	Gmps	670032|AA591640|AI047208|Gm9479	guanine monophosphate synthetase	protein-coding	0.080000	0.631841	-29(GCCTCTAAGAGG,-,0.00),-28(CCTCTAAGAGGC,+,0.00)
mm_50219.1	chr6	42349696	42349896	+	1	NA	NA	NA	-32	NM_011777	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.050000	0.681592	
mm_116891.1	chr13	55349841	55350041	-	1	NA	NA	NA	12842	NM_025828	66890	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding	0.000000	0.383085	
mm_147632.1	chr18	58210638	58210838	-	1	NA	NA	NA	-812	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.030000	0.606965	
mm_165283.1	chr2	83812751	83812951	+	1	NA	NA	NA	123	NM_175514	241520	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	0.085000	0.711443	
mm_70052.1	chr7	142650707	142650907	-	1	NA	NA	NA	4189	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.010000	0.442786	
mm_156628.1	chrX	155262417	155262617	+	1	NA	NA	NA	74	NM_019736	56360	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	0.075000	0.666667	
mm_154346.1	chrM	5307	5507	+	1	NA	NA	NA	NA	NA									0.030000	0.398010	
mm_163665.1	chr13	78273891	78274091	-	1	NA	NA	NA	-75118	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.020000	0.437811	
mm_128220.1	chr15	36367007	36367207	-	1	NA	NA	NA	-83960	NM_013923	30945	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0.000000	0.467662	
mm_158672.1	chrX	157598531	157598731	-	1	NA	NA	NA	84	NM_172307	270669	Mm.37577	NM_172307	ENSMUSG00000046873	Mbtps2	9630032G22Rik|AI662535	membrane-bound transcription factor peptidase, site 2	protein-coding	0.100000	0.666667	
mm_121095.1	chr14	99310848	99311048	+	1	NA	NA	NA	12257	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.000000	0.338308	
mm_104295.1	chr11	90390440	90390640	-	1	NA	NA	NA	377	NM_172563	217082	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0.040000	0.412935	
mm_12912.1	chr2	84840583	84840783	+	1	NA	NA	NA	57	NM_001083809	72401	Mm.22716	NM_024497	ENSMUSG00000027075	Slc43a1	2610016F07Rik|AA986141|Lat3|PB39|Pov1|R00504	solute carrier family 43, member 1	protein-coding	0.070000	0.656716	
mm_49912.1	chr6	39033292	39033492	+	1	NA	NA	NA	34194	NR_040523	69986	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.020000	0.517413	
mm_16941.1	chr2	14987440	14987640	-	1	NA	NA	NA	61772	NM_001165942	74455	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	0.005000	0.457711	
mm_145257.1	chr18	52529094	52529294	+	1	NA	NA	NA	527	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.110000	0.711443	
mm_44391.1	chr5	17829194	17829394	-	1	NA	NA	NA	6602	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.020000	0.398010	
mm_61042.1	chr7	49759451	49759651	+	1	NA	NA	NA	39	NM_001146052	53415	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0.020000	0.542289	
mm_28511.1	chr3	92583907	92584107	-	1	NA	NA	NA	5017	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.005000	0.412935	
mm_156519.1	chrX	150589852	150590052	+	1	NA	NA	NA	31	NM_008824	18639	Mm.249131	NM_008824	ENSMUSG00000025271	Pfkfb1	PFK/FBPase 1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	protein-coding	0.015000	0.497512	
mm_118244.1	chr13	111808658	111808858	-	1	NA	NA	NA	225	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.170000	0.796020	
mm_1754.1	chr1	75509658	75509858	+	1	NA	NA	NA	2149	NM_001329843	16322	Mm.1100	NM_010564	ENSMUSG00000032968	Inha	AW555078	inhibin alpha	protein-coding	0.070000	0.666667	
mm_140555.1	chr17	7827200	7827400	-	1	NA	NA	NA	-22326	NM_001081416	68655	Mm.379161	NM_001081416	ENSMUSG00000071984	Fndc1	1110027O12Rik|1110051A18Rik|mKIAA1866	fibronectin type III domain containing 1	protein-coding	0.130000	0.751244	-37(GCATCTAAAAGG,-,0.00)
mm_114326.1	chr13	60610457	60610657	+	1	NA	NA	NA	8346	NM_134062	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.010000	0.512438	
mm_71664.1	chr8	60640763	60640963	+	1	NA	NA	NA	8038	NM_001293769	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	0.005000	0.432836	
mm_38145.1	chr4	134853766	134853966	-	1	NA	NA	NA	-521	NM_025382	66146	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61	transmembrane protein 57	protein-coding	0.110000	0.676617	
mm_124644.1	chr15	4898115	4898315	+	1	NA	NA	NA	-522	NM_001166066	223825	Mm.159281	NM_001166066	ENSMUSG00000022155	Mroh2b	4930455B06Rik|Heatr7b2|SPIF	maestro heat-like repeat family member 2B	protein-coding	0.010000	0.487562	
mm_127501.1	chr15	101427516	101427716	+	1	NA	NA	NA	11188	NM_001003668	406219	Mm.347934	NM_001003668	ENSMUSG00000047641	Krt87	K83|K87|Krt2-25|Krt83	keratin 87	protein-coding	0.015000	0.557214	
mm_94033.1	chr10	127888619	127888819	-	1	NA	NA	NA	14	NM_001150749	54150	Mm.6696	NM_017473	ENSMUSG00000040134	Rdh7	AI194929|CRAD2	retinol dehydrogenase 7	protein-coding	0.000000	0.442786	
mm_79254.1	chr9	50751253	50751453	+	1	NA	NA	NA	28	NM_001289782	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.045000	0.592040	
mm_125614.1	chr15	61987211	61987411	+	1	NA	NA	NA	1970	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.050000	0.582090	
mm_131.1	chr1	10039708	10039908	+	1	NA	NA	NA	1590	NM_026493	211660	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	0.120000	0.746269	
mm_124439.1	chr14	118706107	118706307	-	1	NA	NA	NA	12	NM_001163676	239273	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.165000	0.786070	
mm_54037.1	chr6	12749101	12749301	-	1	NA	NA	NA	52	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding	0.105000	0.741294	
mm_43673.1	chr5	138780409	138780609	+	1	NA	NA	NA	25428	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.035000	0.482587	
mm_169582.1	chr15	24161935	24162135	-	1	NA	NA	NA	1125572	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding	0.025000	0.472637	-38(GGGTATTTAAGG,-,0.00)
mm_58162.1	chr6	142472995	142473195	-	1	NA	NA	NA	14	NM_145572	232493	Mm.275975	NM_145572	ENSMUSG00000030244	Gys2	BC021322|LGS	glycogen synthase 2	protein-coding	0.005000	0.437811	
mm_35700.1	chr4	44167335	44167535	-	1	NA	NA	NA	103	NM_175201	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.085000	0.636816	
mm_85960.1	chr9	112126707	112126907	-	1	NA	NA	NA	-8096	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.005000	0.497512	
mm_34281.1	chr4	141424558	141424758	+	1	NA	NA	NA	3879	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.000000	0.532338	
mm_117217.1	chr13	64107063	64107263	-	1	NA	NA	NA	-17962	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.005000	0.398010	-43(CCTTTTAAACAT,+,0.00),-22(GCATAAATAGAC,+,0.00)
mm_75079.1	chr8	33902484	33902684	-	1	NA	NA	NA	27279	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.010000	0.472637	
mm_71507.1	chr8	46837471	46837671	+	1	NA	NA	NA	97826	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.015000	0.512438	
mm_156038.1	chrX	107676747	107676947	+	1	NA	NA	NA	335	NM_145224	245572	Mm.137011	NM_145224	ENSMUSG00000031241	Tbx22	D230020M15Rik	T-box 22	protein-coding	0.040000	0.582090	55(GCCTTAATGGGG,+,0.00)
mm_242.1	chr1	19208998	19209198	+	1	NA	NA	NA	184	NM_001286340	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.025000	0.477612	
mm_40924.1	chr5	76016289	76016489	+	1	NA	NA	NA	-37961	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.015000	0.522388	
mm_146617.1	chr18	10093855	10094055	-	1	NA	NA	NA	-63806	NM_001038589	59025	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0.005000	0.298507	73(GACTTTAAAAAC,-,0.00)
mm_94392.1	chr11	5541813	5542013	+	1	NA	NA	NA	304	NM_134033	104479	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	0.160000	0.781095	
mm_32514.1	chr4	108619918	108620118	+	1	NA	NA	NA	62	NM_177045	319965	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	0.135000	0.746269	
mm_158301.1	chrX	119853480	119853680	-	1	NA	NA	NA	-73616	NM_053114	93728	Mm.125979	NM_053114	ENSMUSG00000034732	Pabpc5	C820015E17	poly(A) binding protein, cytoplasmic 5	protein-coding	0.000000	0.497512	-40(GATCATAAAAGG,-,0.00)
mm_42831.1	chr5	122101688	122101888	+	1	NA	NA	NA	808	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.020000	0.552239	
mm_52026.1	chr6	94745455	94745655	+	1	NA	NA	NA	-37301	NR_035483	100316707		NR_035483	ENSMUSG00000088552	Mir1957a	Mir1957|mmu-mir-1957|mmu-mir-1957a	microRNA 1957a	ncRNA	0.025000	0.432836	
mm_103331.1	chr11	74572610	74572810	-	1	NA	NA	NA	17448	NM_001015046	380711	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.015000	0.582090	
mm_28283.1	chr3	88951003	88951203	-	1	NA	NA	NA	-821	NM_001164533	65111	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0.045000	0.656716	
mm_59223.1	chr7	24636400	24636600	+	1	NA	NA	NA	-70	NM_133743	72434	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	0.055000	0.686567	
mm_127334.1	chr15	100468884	100469084	+	1	NA	NA	NA	-50	NM_134093	68614	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	0.175000	0.791045	
mm_12690.1	chr2	76369839	76370039	+	1	NA	NA	NA	-45	NM_153405	241490	Mm.33310	NM_153405	ENSMUSG00000042369	Rbm45	Drb1|Drbp1|G430095G15Rik	RNA binding motif protein 45	protein-coding	0.070000	0.611940	
mm_54984.1	chr6	48741920	48742120	-	1	NA	NA	NA	2973	NM_008376	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.025000	0.472637	
mm_136830.1	chr17	12741245	12741445	+	1	NA	NA	NA	34	NR_027784	104103	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.035000	0.567164	
mm_110816.1	chr12	72408207	72408407	-	1	NA	NA	NA	747	NM_001286448	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.100000	0.671642	
mm_33833.1	chr4	135626722	135626922	+	1	NA	NA	NA	167	NR_027909	73937	Mm.292326	NM_028688	ENSMUSG00000086788	1700029M20Rik	4930406E24Rik	RIKEN cDNA 1700029M20 gene	ncRNA	0.035000	0.527363	
mm_143721.1	chr17	81375428	81375628	-	1	NA	NA	NA	-310443	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.005000	0.437811	
mm_33812.1	chr4	135225979	135226179	+	1	NA	NA	NA	46681	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.030000	0.472637	16(GGTTATAAATGG,-,0.00)
mm_979.1	chr1	58406432	58406632	+	1	NA	NA	NA	13396	NM_025824	66882	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.005000	0.353234	
mm_56007.1	chr6	86493848	86494048	-	1	NA	NA	NA	-5721	NR_040292	381792	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.005000	0.492537	-61(TGCTTTAAAAAA,-,0.00),-32(TCTTATAAAGCC,+,0.00)
mm_26788.1	chr3	9623424	9623624	-	1	NA	NA	NA	-13439	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.005000	0.462687	
mm_93133.1	chr10	92124114	92124314	-	1	NA	NA	NA	13009	NR_037219	100526517		NR_037219	ENSMUSG00000093227	Mir1251	mir-1251|mmu-mir-1251	microRNA 1251	ncRNA	0.010000	0.402985	
mm_150566.1	chr19	40089531	40089731	+	1	NA	NA	NA	-48	NM_134144	107141	Mm.474575	NM_134144	ENSMUSG00000054827	Cyp2c50	AI266900	cytochrome P450, family 2, subfamily c, polypeptide 50	protein-coding	0.000000	0.383085	
mm_92091.1	chr10	62865185	62865385	-	1	NA	NA	NA	14729	NM_027384	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.020000	0.517413	
mm_68243.1	chr7	105481779	105481979	-	1	NA	NA	NA	318	NM_028444	109042	Mm.3124	NM_028444	ENSMUSG00000037060	Prkcdbp	3110015B12Rik|6330514M23Rik|SRBC	protein kinase C, delta binding protein	protein-coding	0.110000	0.711443	
mm_89394.1	chr10	89873407	89873607	+	1	NA	NA	NA	-2	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.075000	0.701493	76(CCTTATAGGGTG,+,0.00)
mm_96730.1	chr11	69685844	69686044	+	1	NA	NA	NA	-390	NM_023517	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.025000	0.547264	
mm_71191.1	chr8	40871202	40871402	+	1	NA	NA	NA	8935	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.005000	0.303483	
mm_88732.1	chr10	80249015	80249215	+	1	NA	NA	NA	-337	NM_029272	75406	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0.085000	0.532338	
mm_75564.1	chr8	58913179	58913379	-	1	NA	NA	NA	1524	NM_173411	234290	Mm.39244	NM_173411	ENSMUSG00000049946	BC030500	-	cDNA sequence BC030500	protein-coding	0.020000	0.552239	
mm_43761.1	chr5	140616900	140617100	+	1	NA	NA	NA	9659	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.030000	0.641791	
mm_161257.1	chr13	112594200	112594400	-	1	NA	NA	NA	-13638	NM_139299	218624	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	0.010000	0.517413	
mm_23739.1	chr3	69222280	69222480	+	1	NA	NA	NA	-39	NM_027843	71619	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	0.015000	0.427861	
mm_142737.1	chr17	48388299	48388499	-	1	NA	NA	NA	12181	NM_001347402	18044	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	0.010000	0.482587	
mm_109663.1	chr12	113022338	113022538	+	1	NA	NA	NA	7930	NM_001291444	217893	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.000000	0.422886	
mm_64813.1	chr7	6730322	6730522	-	1	NA	NA	NA	-3	NM_008817	18616	Mm.389800	NM_008817	ENSMUSG00000002265	Peg3	AL022617|ASF-1|End4|Gcap4|Pw1|Zfp102|mKIAA0287	paternally expressed 3	protein-coding	0.070000	0.661692	
mm_128311.1	chr15	37792303	37792503	-	1	NA	NA	NA	25	NM_134094	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.030000	0.492537	-36(CTTTTTAAAAGG,+,0.00),-36(CTTTTTAAAAGG,-,0.00),-35(TTTTTAAAAGGC,+,0.00)
mm_93291.1	chr10	96370686	96370886	-	1	NA	NA	NA	144579	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.025000	0.497512	
mm_125094.1	chr15	27571283	27571483	+	1	NA	NA	NA	-111	NR_106065	102466808		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0.030000	0.562189	
mm_145212.1	chr18	50030979	50031179	+	1	NA	NA	NA	-22203	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.010000	0.492537	
mm_112004.1	chr12	110845100	110845300	-	1	NA	NA	NA	-4261	NM_011973	26448	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0.035000	0.606965	
mm_136487.1	chr16	96082602	96082802	-	1	NA	NA	NA	-274	NM_145125	93871	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0.135000	0.810945	
mm_106387.1	chr11	118513265	118513465	-	1	NA	NA	NA	36405	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.035000	0.626866	
mm_60697.1	chr7	45175223	45175423	+	1	NA	NA	NA	2020	NR_106022	102465638		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0.015000	0.517413	
mm_147347.1	chr18	43323764	43323964	-	1	NA	NA	NA	49408	NM_001136086	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.010000	0.557214	
mm_25066.1	chr3	99253265	99253465	+	1	NA	NA	NA	-395	NM_009323	21384	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0.025000	0.582090	
mm_149282.1	chr19	10621782	10621982	+	1	NA	NA	NA	-12351	NM_027913	71768	Mm.169261	NM_027913	ENSMUSG00000043789	Vwce	1300015B04Rik	von Willebrand factor C and EGF domains	protein-coding	0.005000	0.492537	
mm_132263.1	chr16	32776206	32776406	+	1	NA	NA	NA	21129	NM_146071	224116	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	0.015000	0.522388	
mm_48977.1	chr6	4754476	4754676	+	1	NA	NA	NA	7270	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.020000	0.502488	
mm_13930.1	chr2	120977178	120977378	+	1	NA	NA	NA	216	NM_175285	96957	Mm.315212	NM_175285	ENSMUSG00000054484	Tmem62	B830009D23Rik|C77355	transmembrane protein 62	protein-coding	0.135000	0.766169	
mm_129455.1	chr15	78565872	78566072	-	1	NA	NA	NA	6811	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.035000	0.577114	
mm_32071.1	chr4	97860045	97860245	+	1	NA	NA	NA	82519	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.010000	0.407960	
mm_67381.1	chr7	79842137	79842337	-	1	NA	NA	NA	115	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.025000	0.567164	
mm_20741.1	chr2	138081425	138081625	-	1	NA	NA	NA	-175059	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.010000	0.472637	
mm_121297.1	chr14	105589419	105589619	+	1	NA	NA	NA	-30	NR_102319	380930	Mm.427836	NR_102319		9330188P03Rik	Gm1589|mgt-6	RIKEN cDNA 9330188P03 gene	ncRNA	0.060000	0.482587	
mm_158926.1	chr1	60098566	60098766	-	1	NA	NA	NA	-166	NM_001199060	57750	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	0.120000	0.766169	
mm_73938.1	chr8	120050145	120050345	+	1	NA	NA	NA	51227	NM_133967	102193	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.045000	0.557214	
mm_72073.1	chr8	71543065	71543265	+	1	NA	NA	NA	235	NM_028617	73711	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	0.095000	0.691542	
mm_69914.1	chr7	141693901	141694101	-	1	NA	NA	NA	3661	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.020000	0.527363	
mm_12667.1	chr2	75704035	75704235	+	1	NA	NA	NA	528	NR_132727	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.085000	0.711443	
mm_130522.1	chr15	98881186	98881386	-	1	NA	NA	NA	128	NM_026967	69159	Mm.259708	NM_026967	ENSMUSG00000023755	Rhebl1	1810036J22Rik|Rheb2	Ras homolog enriched in brain like 1	protein-coding	0.105000	0.666667	
mm_33180.1	chr4	126058556	126058756	+	1	NA	NA	NA	91	NM_172701	230751	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	0.070000	0.582090	
mm_35028.1	chr4	4019435	4019635	-	1	NA	NA	NA	128	NM_181989	242285	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	0.040000	0.601990	
mm_116448.1	chr13	43171260	43171460	-	1	NA	NA	NA	141	NM_001252639	67046	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	0.095000	0.666667	
mm_137614.1	chr17	28271863	28272063	+	1	NA	NA	NA	255	NR_045427	69050	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0.010000	0.577114	
mm_97092.1	chr11	73160312	73160512	+	1	NA	NA	NA	-118	NM_033321	94045	Mm.156893	NM_033321	ENSMUSG00000005950	P2rx5	P2X5	purinergic receptor P2X, ligand-gated ion channel, 5	protein-coding	0.105000	0.721393	
mm_163201.1	chr11	96773308	96773508	-	1	NA	NA	NA	4147	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.015000	0.512438	
mm_124213.1	chr14	100109707	100109907	-	1	NA	NA	NA	39989	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.030000	0.522388	
mm_115577.1	chr13	11573660	11573860	-	1	NA	NA	NA	51708	NR_027813	664793	Mm.410565	NR_027813		Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo	0.010000	0.487562	
mm_161952.1	chr19	5672513	5672713	-	1	NA	NA	NA	6463	NR_105953	102465596		NR_105953	ENSMUSG00000098568	Mir6987	Gm27891|mmu-mir-6987	microRNA 6987	ncRNA	0.040000	0.572139	
mm_14147.1	chr2	126552765	126552965	+	1	NA	NA	NA	-159	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0.050000	0.587065	
mm_111777.1	chr12	104153724	104153924	-	1	NA	NA	NA	48	NM_008458	16625	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	0.010000	0.537313	-60(GCTTTAATGTGC,+,0.00)
mm_61879.1	chr7	89632334	89632534	+	1	NA	NA	NA	-384	NM_181407	109264	Mm.334011	NM_181407	ENSMUSG00000030621	Me3	1700020C08Rik|B230207H15Rik	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding	0.030000	0.547264	
mm_16383.1	chr2	178327573	178327773	+	1	NA	NA	NA	79985	NM_177191	320558	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding	0.000000	0.616915	
mm_23979.1	chr3	86011502	86011702	+	1	NA	NA	NA	-9111	NM_001001650	368202	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding	0.015000	0.487562	-38(GGCTATAAAAAG,-,0.00)
mm_94710.1	chr11	20469439	20469639	+	1	NA	NA	NA	-73714	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.010000	0.557214	
mm_139886.1	chr17	70834547	70834747	+	1	NA	NA	NA	12130	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.070000	0.611940	
mm_47928.1	chr5	135013045	135013245	-	1	NA	NA	NA	12	NR_026688	69812	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0.005000	0.542289	
mm_42325.1	chr5	114901212	114901412	+	1	NA	NA	NA	4378	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.020000	0.477612	
mm_5418.1	chr1	33907665	33907865	-	1	NA	NA	NA	2	NM_001310484	320705	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.190000	0.810945	
mm_77611.1	chr8	123893512	123893712	-	1	NA	NA	NA	1163	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.045000	0.592040	
mm_1997.1	chr1	87126839	87127039	+	1	NA	NA	NA	1931	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.030000	0.567164	
mm_99303.1	chr11	101373903	101374103	+	1	NA	NA	NA	6287	NM_008061	14377	Mm.18064	NM_008061	ENSMUSG00000078650	G6pc	AW107337|G6Pase|G6pt|Glc-6-Pase	glucose-6-phosphatase, catalytic	protein-coding	0.020000	0.517413	
mm_30973.1	chr4	34550583	34550783	+	1	NA	NA	NA	68	NM_001007589	433693	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.120000	0.651741	
mm_29983.1	chr3	135423317	135423517	-	1	NA	NA	NA	16	NM_025902	67006	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0.175000	0.781095	
mm_143587.1	chr17	74438561	74438761	-	1	NA	NA	NA	20447	NM_001033367	268973	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.045000	0.537313	
mm_10103.1	chr2	3475079	3475279	+	1	NA	NA	NA	-193	NR_027509	64707	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 homolog 2 (Drosophila)	protein-coding	0.100000	0.641791	
mm_4200.1	chr1	171229504	171229704	+	1	NA	NA	NA	4550	NM_013474	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.015000	0.432836	
mm_67649.1	chr7	84679274	84679474	-	1	NA	NA	NA	-23	NM_022985	65098	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	0.005000	0.412935	
mm_105248.1	chr11	102350018	102350218	-	1	NA	NA	NA	15163	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.015000	0.497512	
mm_79568.1	chr9	58134150	58134350	+	1	NA	NA	NA	175	NM_001162476	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.015000	0.487562	
mm_45835.1	chr5	87694778	87694978	-	1	NA	NA	NA	4547	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.527363	
mm_127854.1	chr15	8099099	8099299	-	1	NA	NA	NA	10	NM_001081402	545085	Mm.321312	NM_198413	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	0.120000	0.696517	
mm_39024.1	chr4	152131721	152131921	-	1	NA	NA	NA	-2896	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.080000	0.676617	
mm_61689.1	chr7	81031467	81031667	+	1	NA	NA	NA	-26033	NM_054085	116904	Mm.475768	NM_054085	ENSMUSG00000038763	Alpk3	AW319487|D330016D04|MAK|Midori|mKIAA1330	alpha-kinase 3	protein-coding	0.005000	0.358209	
mm_172172.1	chr6	45460611	45460811	+	1	NA	NA	NA	400650	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.000000	0.452736	
mm_102466.1	chr11	59964817	59965017	-	1	NA	NA	NA	27	NM_009026	19416	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding	0.065000	0.646766	
mm_122502.1	chr14	46822029	46822229	-	1	NA	NA	NA	113	NM_022023	63985	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	0.105000	0.656716	-30(TCTTAAAGGGGC,+,0.00)
mm_81842.1	chr9	118512823	118513023	+	1	NA	NA	NA	6605	NM_018748	54214	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	0.010000	0.407960	8(GGCTTTATGAGA,-,0.00)
mm_898.1	chr1	53313597	53313797	+	1	NA	NA	NA	73	NR_104360	72085	Mm.482256	NM_028091	ENSMUSG00000026096	Osgepl1	2610001M19Rik|AA416452	O-sialoglycoprotein endopeptidase-like 1	protein-coding	0.070000	0.587065	
mm_31246.1	chr4	44924070	44924270	+	1	NA	NA	NA	-57224	NM_080289	76238	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0.000000	0.412935	
mm_30814.1	chr4	21747623	21747823	+	1	NA	NA	NA	19488	NM_029840	77032	Mm.87238	NM_029840	ENSMUSG00000028251	Tstd3	2610029I01Rik	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding	0.000000	0.238806	
mm_123286.1	chr14	61439750	61439950	-	1	NA	NA	NA	97	NM_008466	16648	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0.165000	0.771144	
mm_127659.1	chr15	102518219	102518419	+	1	NA	NA	NA	127	NM_009319	21357	Mm.291485	NM_009319	ENSMUSG00000023051	Tarbp2	Prbp|TRBP	TARBP2, RISC loading complex RNA binding subunit	protein-coding	0.060000	0.557214	
mm_61762.1	chr7	82771789	82771989	+	1	NA	NA	NA	-16245	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.045000	0.676617	
mm_70950.1	chr8	26975921	26976121	+	1	NA	NA	NA	-1315	NM_001101502	353310	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.030000	0.512438	
mm_154706.1	chrX	8276038	8276238	+	1	NA	NA	NA	4757	NM_172479	209837	Mm.6055	NM_172479	ENSMUSG00000031170	Slc38a5	C81234|E330031E14|JM24|SN2	solute carrier family 38, member 5	protein-coding	0.010000	0.507463	
mm_31030.1	chr4	40888898	40889098	+	1	NA	NA	NA	-31058	NM_011463	20731	Mm.25246	NM_011463	ENSMUSG00000028415	Spink4	MPGC60	serine peptidase inhibitor, Kazal type 4	protein-coding	0.030000	0.457711	
mm_96636.1	chr11	69326164	69326364	+	1	NA	NA	NA	6	NM_010599	16499	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0.055000	0.606965	
mm_65795.1	chr7	28907197	28907397	-	1	NA	NA	NA	25641	NM_001110807	60594	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	0.010000	0.587065	
mm_15061.1	chr2	152962425	152962625	+	1	NA	NA	NA	40	NM_001083618	74711	Mm.44746	NM_029064	ENSMUSG00000074673	Ttll9	1700016F23Rik|4930509O20Rik|AW046572	tubulin tyrosine ligase-like family, member 9	protein-coding	0.065000	0.522388	
mm_10158.1	chr2	4400713	4400913	+	1	NA	NA	NA	-163	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.030000	0.557214	
mm_136672.1	chr17	6106815	6107015	+	1	NA	NA	NA	85	NM_001103181	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.120000	0.776119	
mm_123382.1	chr14	63271737	63271937	-	1	NA	NA	NA	-26566	NM_001310610	14463	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0.020000	0.457711	-95(TGCTTTAAAGAG,-,0.00),-93(CTTTAAAGAGAG,+,0.00)
mm_171096.1	chr3	130068319	130068519	+	1	NA	NA	NA	-7512	NM_207209	99683	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.070000	0.477612	
mm_136924.1	chr17	13846094	13846294	+	1	NA	NA	NA	-84800	NM_022311	21646	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0.010000	0.482587	
mm_93923.1	chr10	127136524	127136724	-	1	NA	NA	NA	-15464	NM_001171026	216440	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.000000	0.497512	
mm_53825.1	chr6	147475794	147475994	+	1	NA	NA	NA	23	NM_025911	67015	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding	0.080000	0.691542	
mm_116547.1	chr13	45966202	45966402	-	1	NA	NA	NA	-1311	NM_009124	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.030000	0.472637	
mm_59934.1	chr7	30423821	30424021	+	1	NA	NA	NA	617	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.020000	0.472637	
mm_157758.1	chrX	73494983	73495183	-	1	NA	NA	NA	-8003	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.005000	0.497512	
mm_130502.1	chr15	98831370	98831570	-	1	NA	NA	NA	38	NM_016781	19082	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.095000	0.721393	
mm_22129.1	chr2	170387894	170388094	-	1	NA	NA	NA	31633	NR_040610	73303	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.030000	0.522388	
mm_110380.1	chr12	40210454	40210654	-	1	NA	NA	NA	-11239	NM_001033437	380755	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	0.005000	0.343284	-6(GCATCTTAAAGG,-,0.00)
mm_162239.1	chrX	154890068	154890268	-	1	NA	NA	NA	99	NM_001097980	100040937	Mm.359511	NM_001097980	ENSMUSG00000072100	Cldn34b1	EG546400|Gm16390	claudin 34B1	protein-coding	0.010000	0.432836	
mm_81662.1	chr9	111019191	111019391	+	1	NA	NA	NA	-1	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.010000	0.597015	
mm_161450.1	chr15	74799841	74800041	-	1	NA	NA	NA	27	NM_029627	76486	Mm.273319	NM_029627	ENSMUSG00000044678	Ly6k	2410015A16Rik|3110035B01Rik|mLy-6K	lymphocyte antigen 6 complex, locus K	protein-coding	0.050000	0.597015	
mm_166082.1	chr4	137796191	137796391	-	1	NA	NA	NA	93	NM_007431	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.125000	0.736318	
mm_114683.1	chr13	80962973	80963173	+	1	NA	NA	NA	-1001	NR_015587	319983	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.110000	0.691542	
mm_169550.1	chr15	103242318	103242518	+	1	NA	NA	NA	1964	NR_002883	434858	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.030000	0.447761	-47(TCTTTTAAGGTC,+,0.00)
mm_134073.1	chr16	8667313	8667513	-	1	NA	NA	NA	4740	NM_025821	52502	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.010000	0.567164	
mm_157362.1	chrX	37110202	37110402	-	1	NA	NA	NA	20	NM_026573	68134	Mm.271160	NM_026573	ENSMUSG00000036572	Upf3b	5730594O13Rik|AI317193|AW541158|RENT3B|UPF3X	UPF3 regulator of nonsense transcripts homolog B (yeast)	protein-coding	0.065000	0.567164	46(CGCTCTAAAGAG,-,0.00)
mm_14894.1	chr2	149405209	149405409	+	1	NA	NA	NA	60	NM_021405	58214	Mm.117117	NM_021405	ENSMUSG00000033156	Cst10	DD72	cystatin 10 (chondrocytes)	protein-coding	0.005000	0.527363	
mm_105498.1	chr11	106160035	106160235	-	1	NA	NA	NA	7	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.190000	0.860697	
mm_62993.1	chr7	120624140	120624340	+	1	NA	NA	NA	-10949	NM_025899	67003	Mm.334206	NM_025899	ENSMUSG00000030884	Uqcrc2	1500004O06Rik	ubiquinol cytochrome c reductase core protein 2	protein-coding	0.030000	0.482587	
mm_60520.1	chr7	44479839	44480039	+	1	NA	NA	NA	-4578	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.527363	
mm_54076.1	chr6	14755168	14755368	-	1	NA	NA	NA	6	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	0.005000	0.388060	
mm_92859.1	chr10	81545084	81545284	-	1	NA	NA	NA	-138	NM_010301	14672	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0.160000	0.781095	
mm_165787.1	chr3	131489621	131489821	+	1	NA	NA	NA	-75047	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.045000	0.601990	
mm_161223.1	chr13	68999395	68999595	-	1	NA	NA	NA	46	NM_153534	210044	Mm.390617	NM_153534	ENSMUSG00000021536	Adcy2	mKIAA1060	adenylate cyclase 2	protein-coding	0.170000	0.860697	
mm_149433.1	chr19	11470694	11470894	+	1	NA	NA	NA	1426	NM_028595	73656	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.000000	0.323383	
mm_47823.1	chr5	134244104	134244304	-	1	NA	NA	NA	-14579	NR_104383	17969	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.025000	0.542289	
mm_148558.1	chr19	4721120	4721320	+	1	NA	NA	NA	9997	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	0.020000	0.582090	
mm_60365.1	chr7	44441931	44442131	+	1	NA	NA	NA	-456	NM_198250	272381	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	0.025000	0.601990	
mm_44858.1	chr5	34243442	34243642	-	1	NA	NA	NA	44782	NM_001015039	231125	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.005000	0.477612	-48(CCTTTTCTGGGA,+,0.00)
mm_15892.1	chr2	164911341	164911541	+	1	NA	NA	NA	309	NM_199027	329559	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0.105000	0.746269	
mm_95552.1	chr11	52307832	52308032	+	1	NA	NA	NA	-24918	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.010000	0.512438	
mm_106761.1	chr12	4234345	4234545	+	1	NA	NA	NA	-151	NM_134046	52504	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.035000	0.527363	
mm_41475.1	chr5	91962327	91962527	+	1	NA	NA	NA	129	NR_073442	68098	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0.040000	0.502488	
mm_2422.1	chr1	95313994	95314194	+	1	NA	NA	NA	466	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.080000	0.716418	
mm_122579.1	chr14	50833946	50834146	-	1	NA	NA	NA	26100	NM_009632	11546	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0.020000	0.547264	-74(GCTTTTAGAAGG,+,0.00)
mm_15067.1	chr2	153065894	153066094	+	1	NA	NA	NA	39	NM_145536	228788	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	0.010000	0.547264	
mm_63980.1	chr7	139983222	139983422	+	1	NA	NA	NA	3552	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.000000	0.537313	
mm_57926.1	chr6	134539420	134539620	-	1	NA	NA	NA	27393	NM_008514	16974	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	0.005000	0.393035	
mm_2493.1	chr1	105993872	105994072	+	1	NA	NA	NA	3566	NM_001122675	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.120000	0.761194	
mm_100251.1	chr11	117326341	117326541	+	1	NA	NA	NA	-5274	NM_017380	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.020000	0.582090	
mm_131004.1	chr15	103562703	103562903	-	1	NA	NA	NA	2278	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.020000	0.482587	
mm_132830.1	chr16	45372722	45372922	+	1	NA	NA	NA	36231	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.010000	0.398010	
mm_80266.1	chr9	72925547	72925747	+	1	NA	NA	NA	-3	NM_028116	72135	Mm.273605	NM_028116	ENSMUSG00000034910	Pygo1	2600014C22Rik	pygopus 1	protein-coding	0.180000	0.815920	
mm_108836.1	chr12	95782509	95782709	+	1	NA	NA	NA	90383	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.010000	0.383085	
mm_157330.1	chrX	23364926	23365126	-	1	NA	NA	NA	56	NM_026167	67455	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	0.045000	0.651741	
mm_7390.1	chr1	111864616	111864816	-	1	NA	NA	NA	202	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0.100000	0.721393	
mm_41320.1	chr5	90471992	90472192	+	1	NA	NA	NA	11222	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.467662	57(TCTTTTAAACAC,+,0.00)
mm_34357.1	chr4	144891342	144891542	+	1	NA	NA	NA	-1385	NM_001172424	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.010000	0.577114	
mm_88180.1	chr10	69925741	69925941	+	1	NA	NA	NA	309	NM_009670	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.030000	0.398010	-71(GCTTTTATGTCA,+,0.00)
mm_119250.1	chr14	33923492	33923692	+	1	NA	NA	NA	5	NM_145741	14560	Mm.432071	NM_145741	ENSMUSG00000021943	Gdf10	Bmp3b	growth differentiation factor 10	protein-coding	0.145000	0.761194	
mm_152092.1	chr19	6908200	6908400	-	1	NA	NA	NA	1345	NM_012021	54683	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.010000	0.522388	
mm_148877.1	chr19	6497931	6498131	+	1	NA	NA	NA	45039	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.095000	0.716418	
mm_138944.1	chr17	44078768	44078968	+	1	NA	NA	NA	66	NM_001329619	83965	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	0.055000	0.601990	
mm_70303.1	chr8	4087606	4087806	+	1	NA	NA	NA	18058	NM_026956	69142	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	0.060000	0.641791	
mm_102797.1	chr11	68852960	68853160	-	1	NA	NA	NA	71	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.105000	0.716418	
mm_3213.1	chr1	135838809	135839009	+	1	NA	NA	NA	-1952	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.015000	0.452736	
mm_77264.1	chr8	115707685	115707885	-	1	NA	NA	NA	-891	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.040000	0.477612	-33(GGCTTTAAAATC,-,0.00),79(TGCTTTAAAAAA,-,0.00)
mm_173194.1	chrX	62616938	62617138	+	1	NA	NA	NA	-90027	NR_045442	75545	Mm.391270	NR_045442	ENSMUSG00000085757	1700019B21Rik	-	RIKEN cDNA 1700019B21 gene	ncRNA	0.030000	0.447761	
mm_152469.1	chr19	10968630	10968830	-	1	NA	NA	NA	5940	NM_023529	69826	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	0.020000	0.567164	
mm_21479.1	chr2	162660983	162661183	-	1	NA	NA	NA	64	NM_001291151	19281	Mm.235807	NM_021464	ENSMUSG00000053141	Ptprt	R-PTP-T|RPTP-rfo|RPTP-rho|RPTPmam4|RPTPrho|mKIAA0283|mRPTPrho	protein tyrosine phosphatase, receptor type, T	protein-coding	0.175000	0.835821	
mm_7792.1	chr1	131511328	131511528	-	1	NA	NA	NA	15933	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.000000	0.552239	
mm_98590.1	chr11	95777898	95778098	+	1	NA	NA	NA	28931	NM_201609	268469	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	0.035000	0.517413	
mm_95029.1	chr11	32024777	32024977	+	1	NA	NA	NA	23600	NM_001290681	18197	Mm.3304	NM_008741	ENSMUSG00000020297	Nsg2	-	neuron specific gene family member 2	protein-coding	0.005000	0.402985	
mm_123107.1	chr14	55884107	55884307	-	1	NA	NA	NA	49	NM_019820	56410	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0.005000	0.582090	
mm_30616.1	chr4	8535561	8535761	+	1	NA	NA	NA	17	NM_021518	59021	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0.155000	0.766169	
mm_44788.1	chr5	32184916	32185116	-	1	NA	NA	NA	-47692	NM_030072	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0.000000	0.517413	
mm_70688.1	chr8	15011322	15011522	+	1	NA	NA	NA	397	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.120000	0.741294	
mm_66019.1	chr7	30603462	30603662	-	1	NA	NA	NA	9172	NM_026815	109637	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	0.015000	0.587065	
mm_32900.1	chr4	119071984	119072184	+	1	NA	NA	NA	-2973	NR_131914	433751	Mm.224312	NR_131914	ENSMUSG00000066060	Gm12866	OTTMUSG00000008833	predicted gene 12866	ncRNA	0.040000	0.547264	
mm_51335.1	chr6	72389909	72390109	+	1	NA	NA	NA	658	NM_016794	22320	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.030000	0.532338	-35(TTCTAGAAAAGG,-,0.00)
mm_70301.1	chr8	4087440	4087640	+	1	NA	NA	NA	18224	NM_026956	69142	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	0.060000	0.686567	
mm_115820.1	chr13	20016404	20016604	-	1	NA	NA	NA	-74003	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.035000	0.512438	-33(GTGTATATAAGC,-,0.00)
mm_120631.1	chr14	70466482	70466682	+	1	NA	NA	NA	9065	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.015000	0.457711	
mm_89991.1	chr10	112060095	112060295	+	1	NA	NA	NA	6	NM_027018	69286	Mm.47058	NM_027018	ENSMUSG00000020213	Glipr1l1	1700011E04Rik	GLI pathogenesis-related 1 like 1	protein-coding	0.015000	0.497512	
mm_68603.1	chr7	116238288	116238488	-	1	NA	NA	NA	-612	NM_001305186	233765	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.020000	0.462687	
mm_95262.1	chr11	44698928	44699128	+	1	NA	NA	NA	80928	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.005000	0.402985	
mm_18007.1	chr2	38263060	38263260	-	1	NA	NA	NA	24224	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.000000	0.303483	
mm_137133.1	chr17	23600764	23600964	+	1	NA	NA	NA	38	NM_001289482	332221	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	0.025000	0.557214	
mm_86992.1	chr10	25993524	25993724	+	1	NA	NA	NA	-84631	NR_028030	100040851	Mm.478630	NR_028030	ENSMUSG00000039098	Gm9767	ENSMUSG00000039098	predicted gene 9767	ncRNA	0.030000	0.542289	
mm_51530.1	chr6	83188793	83188993	+	1	NA	NA	NA	2947	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.010000	0.487562	70(GCTTTTATATAC,+,0.00),72(TTTTATATACCC,+,0.00)
mm_153459.1	chr19	41217322	41217522	-	1	NA	NA	NA	-10648	NM_011904	24087	Mm.89983	NM_011904	ENSMUSG00000025013	Tll2	-	tolloid-like 2	protein-coding	0.040000	0.407960	
mm_9708.1	chr1	179517909	179518109	-	1	NA	NA	NA	-6	NM_027188	69726	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.080000	0.611940	
mm_70325.1	chr8	4325134	4325334	+	1	NA	NA	NA	24	NR_033527	20300	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0.135000	0.681592	
mm_45077.1	chr5	43881825	43882025	-	1	NA	NA	NA	13116	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.005000	0.417910	
mm_98277.1	chr11	89019390	89019590	+	1	NA	NA	NA	20087	NM_009546	217069	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.015000	0.522388	
mm_136105.1	chr16	85163607	85163807	-	1	NA	NA	NA	10000	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.005000	0.303483	-49(GTTTTTAAAGCA,+,0.00),-15(TTTTTTAAAGTG,+,0.00)
mm_56262.1	chr6	90887013	90887213	-	1	NA	NA	NA	-76990	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.005000	0.422886	
mm_17057.1	chr2	21205280	21205480	-	1	NA	NA	NA	-15	NM_027728	71233	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.040000	0.437811	
mm_128950.1	chr15	74752933	74753133	-	1	NA	NA	NA	-54	NM_011838	23936	Mm.257067	NM_011838	ENSMUSG00000022594	Lynx1	AI838844|SLURP-2	Ly6/neurotoxin 1	protein-coding	0.080000	0.656716	
mm_172601.1	chr8	15519754	15519954	+	1	NA	NA	NA	462201	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.075000	0.522388	
mm_162944.1	chr10	128960913	128961113	-	1	NA	NA	NA	-25	NM_027853	71664	Mm.337232	NM_027853	ENSMUSG00000025347	Mettl7b	0610006F02Rik|AI266817	methyltransferase like 7B	protein-coding	0.015000	0.497512	-60(ACCCATTAAAAG,-,0.00),-58(CCATTAAAAGAA,+,0.00)
mm_86064.1	chr9	114688548	114688748	-	1	NA	NA	NA	-183	NM_146229	235661	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	0.080000	0.666667	
mm_43424.1	chr5	136057041	136057241	+	1	NA	NA	NA	-126	NM_027158	69665	Mm.75713	NM_027158	ENSMUSG00000006143	Upk3bl	2310043J07Rik	uroplakin 3B-like	protein-coding	0.010000	0.582090	
mm_136854.1	chr17	12798502	12798702	+	1	NA	NA	NA	-28896	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.010000	0.442786	
mm_81414.1	chr9	109054791	109054991	+	1	NA	NA	NA	25	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.020000	0.517413	-80(GTCTTTAAGAGG,-,0.00),-79(TCTTTAAGAGGG,+,0.00)
mm_39838.1	chr5	30872983	30873183	+	1	NA	NA	NA	3436	NM_144525	68796	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	0.005000	0.522388	30(GCCTATATGCCC,+,0.00)
mm_108745.1	chr12	88725572	88725772	+	1	NA	NA	NA	-68832	NM_001198587	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.030000	0.477612	-42(GCTTATATAAGG,+,0.00),-42(GCTTATATAAGG,-,0.00)
mm_122670.1	chr14	51922967	51923167	-	1	NA	NA	NA	-294	NM_001011687	497071	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	0.005000	0.557214	
mm_48695.1	chr5	146832710	146832910	-	1	NA	NA	NA	-80	NM_019647	19933	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	0.060000	0.527363	
mm_32790.1	chr4	116807640	116807840	+	1	NA	NA	NA	6	NM_001159581	70603	Mm.180333	NM_133250	ENSMUSG00000028687	Mutyh	5730495A01Rik|Mutyha|Mutyhalpha|Mutyhb|Mutyhbeta|Mutyhc|Myh	mutY DNA glycosylase	protein-coding	0.100000	0.601990	
mm_95167.1	chr11	40733527	40733727	+	1	NA	NA	NA	-34	NM_026023	52653	Mm.276504	NM_026023	ENSMUSG00000020328	Nudcd2	-	NudC domain containing 2	protein-coding	0.065000	0.507463	
mm_80542.1	chr9	81264522	81264722	+	1	NA	NA	NA	-367308	NR_040394	319405	Mm.246494	NR_040393	ENSMUSG00000097466	D430036J16Rik	-	RIKEN cDNA D430036J16 gene	ncRNA	0.000000	0.368159	
mm_127059.1	chr15	97246932	97247132	+	1	NA	NA	NA	-75	NM_172293	239647	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	0.145000	0.711443	
mm_82129.1	chr9	123515410	123515610	+	1	NA	NA	NA	-14372	NM_030692	83493	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.010000	0.437811	
mm_43073.1	chr5	124446662	124446862	+	1	NA	NA	NA	58	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.020000	0.601990	
mm_171288.1	chr3	90079611	90079811	+	1	NA	NA	NA	190	NM_001293749	59069	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0.070000	0.587065	
mm_1200.1	chr1	62711587	62711787	+	1	NA	NA	NA	8370	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.005000	0.402985	
mm_23361.1	chr3	55242470	55242670	+	1	NA	NA	NA	44	NM_001195538	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.070000	0.631841	
mm_50676.1	chr6	51544599	51544799	+	1	NA	NA	NA	176	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.005000	0.447761	
mm_7499.1	chr1	121430875	121431075	-	1	NA	NA	NA	-92	NM_029955	70829	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	0.035000	0.477612	
mm_104752.1	chr11	98463557	98463757	-	1	NA	NA	NA	16823	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.025000	0.452736	
mm_33400.1	chr4	129821352	129821552	+	1	NA	NA	NA	744	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.025000	0.407960	
mm_146107.1	chr18	74216277	74216477	+	1	NA	NA	NA	165	NM_028868	74322	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.140000	0.691542	
mm_163506.1	chr12	113140506	113140706	+	1	NA	NA	NA	1	NM_001347443	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.115000	0.681592	
mm_119330.1	chr14	39220017	39220217	+	1	NA	NA	NA	-252312	NR_131973	432842	Mm.352566	NR_131973		LOC432842	-	uncharacterized LOC432842	ncRNA	0.005000	0.462687	
mm_133308.1	chr16	77599642	77599842	+	1	NA	NA	NA	85	NR_029728	387246		NR_029728	ENSMUSG00000065557	Mirlet7c-1	Mirnlet7c|Mirnlet7c-1|let-7c-1	microRNA let7c-1	ncRNA	0.010000	0.437811	
mm_47366.1	chr5	122921996	122922196	-	1	NA	NA	NA	-21746	NM_013910	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.030000	0.547264	
mm_33456.1	chr4	130792019	130792219	+	1	NA	NA	NA	-418	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.035000	0.601990	
mm_74587.1	chr8	11454829	11455029	-	1	NA	NA	NA	-23000	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.030000	0.462687	
mm_161061.1	chr12	70347270	70347470	-	1	NA	NA	NA	244	NM_001286386	94090	Mm.184012	NM_053167	ENSMUSG00000021071	Trim9	-	tripartite motif-containing 9	protein-coding	0.115000	0.726368	
mm_7630.1	chr1	127677840	127678040	-	1	NA	NA	NA	81	NM_028135	72160	Mm.281287	NM_028135	ENSMUSG00000026347	Tmem163	2610024A01Rik|SV31	transmembrane protein 163	protein-coding	0.095000	0.711443	
mm_99992.1	chr11	114741628	114741828	+	1	NA	NA	NA	8021	NR_037269	100526524		NR_037269	ENSMUSG00000077991	Mir466n	mmu-mir-466n	microRNA 466n	ncRNA	0.020000	0.507463	
mm_6096.1	chr1	63273024	63273224	-	1	NA	NA	NA	-145	NM_028673	73884	Mm.86986	NM_028673	ENSMUSG00000027520	Zdbf2	4930431J08Rik|9330107J05Rik	zinc finger, DBF-type containing 2	protein-coding	0.115000	0.741294	8(CGCTCTTAAAGC,-,0.00),9(GCTCTTAAAGCG,+,0.00)
mm_30293.1	chr3	148989915	148990115	-	1	NA	NA	NA	-35380	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.150000	0.800995	
mm_74273.1	chr8	125012964	125013164	+	1	NA	NA	NA	67	NM_016909	53424	Mm.5248	NM_016909	ENSMUSG00000056820	Tsnax	R74833|Trax	translin-associated factor X	protein-coding	0.145000	0.751244	
mm_48719.1	chr5	147322282	147322482	-	1	NA	NA	NA	58	NM_001039678	231903	Mm.291286	NM_001039678	ENSMUSG00000075543	Urad	EG231903|Prhoxnb	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase	protein-coding	0.020000	0.532338	
mm_15902.1	chr2	164968073	164968273	+	1	NA	NA	NA	185	NM_020333	57138	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	0.095000	0.711443	
mm_172308.1	chr7	104507751	104507951	-	1	NA	NA	NA	-2	NM_001167828	209387	Mm.277377	NM_199146	ENSMUSG00000057596	Trim30d	AI451617|TRIM30-3|Trim79	tripartite motif-containing 30D	protein-coding	0.000000	0.442786	
mm_153143.1	chr19	34248399	34248599	-	1	NA	NA	NA	6874	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.025000	0.502488	
mm_104036.1	chr11	86268457	86268657	-	1	NA	NA	NA	-10989	NM_027421	70422	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0.000000	0.373134	
mm_152792.1	chr19	21471097	21471297	-	1	NA	NA	NA	1464	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.015000	0.447761	
mm_32637.1	chr4	115000158	115000358	+	1	NA	NA	NA	140	NM_001304555	20460	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	0.095000	0.641791	
mm_125047.1	chr15	25843064	25843264	+	1	NA	NA	NA	-134	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.135000	0.756219	
mm_129984.1	chr15	86034093	86034293	-	1	NA	NA	NA	-416	NM_009886	12614	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	0.095000	0.751244	
mm_41145.1	chr5	87925532	87925732	+	1	NA	NA	NA	-1	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.020000	0.452736	
mm_127120.1	chr15	98093366	98093566	+	1	NA	NA	NA	103	NM_144851	223870	Mm.384023	NM_144851	ENSMUSG00000033075	Senp1	2310046A20Rik|D15Ertd528e|E330036L07Rik|suPr-2	SUMO1/sentrin specific peptidase 1	protein-coding	0.095000	0.626866	
mm_156625.1	chrX	155172438	155172638	+	1	NA	NA	NA	-24689	NM_001081671	73347	Mm.63848	NM_001081671	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	0.000000	0.532338	
mm_95241.1	chr11	44617455	44617655	+	1	NA	NA	NA	-545	NM_001290711	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.035000	0.512438	
mm_128604.1	chr15	58324070	58324270	-	1	NA	NA	NA	-1	NM_177755	268807	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	0.025000	0.512438	
mm_25221.1	chr3	103851239	103851439	+	1	NA	NA	NA	-8456	NR_104070	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.015000	0.407960	
mm_123278.1	chr14	61374231	61374431	-	1	NA	NA	NA	-13886	NM_026598	68177	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0.015000	0.388060	
mm_120597.1	chr14	70077236	70077436	+	1	NA	NA	NA	-109	NM_018781	13655	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.095000	0.661692	
mm_72186.1	chr8	72443814	72444014	+	1	NA	NA	NA	34	NM_028170	72254	Mm.30136	NM_028170	ENSMUSG00000052794	1700030K09Rik	-	RIKEN cDNA 1700030K09 gene	protein-coding	0.055000	0.592040	
mm_133509.1	chr16	90738233	90738433	+	1	NA	NA	NA	9	NM_029844	77037	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.030000	0.572139	
mm_122558.1	chr14	49241080	49241280	-	1	NA	NA	NA	4248	NM_025956	67082	Mm.87439	NM_025956	ENSMUSG00000021850	1700011H14Rik	-	RIKEN cDNA 1700011H14 gene	protein-coding	0.010000	0.422886	10(ATCCTTATAAGG,-,0.00),12(CCTTATAAGGCC,+,0.00)
mm_155837.1	chrX	100777210	100777410	+	1	NA	NA	NA	39	NM_001177780	53310	Mm.4615	NM_016747	ENSMUSG00000000881	Dlg3	Dlgh3|SAP102|mKIAA1232	discs, large homolog 3 (Drosophila)	protein-coding	0.100000	0.711443	
mm_158676.1	chrX	158043176	158043376	-	1	NA	NA	NA	-79	NM_177751	245684	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding	0.160000	0.761194	
mm_35992.1	chr4	55532109	55532309	-	1	NA	NA	NA	266	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.120000	0.736318	
mm_51573.1	chr6	83758538	83758738	+	1	NA	NA	NA	3870	NR_105027	67934	Mm.126190	NR_105027	ENSMUSG00000099354	1700124L16Rik	-	RIKEN cDNA 1700124L16 gene	ncRNA	0.015000	0.442786	
mm_127270.1	chr15	99723629	99723829	+	1	NA	NA	NA	-1889	NM_183256	66379	Mm.5265	NM_183256	ENSMUSG00000023020	Cox14	2310016M24Rik|AA959804	cytochrome c oxidase assembly protein 14	protein-coding	0.010000	0.522388	
mm_48573.1	chr5	143320180	143320380	-	1	NA	NA	NA	-4920	NM_172726	231868	Mm.440105	NM_172726	ENSMUSG00000039244	E130309D02Rik	A630028N22	RIKEN cDNA E130309D02 gene	protein-coding	0.030000	0.497512	
mm_43931.1	chr5	145084005	145084205	+	1	NA	NA	NA	236	NM_019767	56443	Mm.371610	NM_019767	ENSMUSG00000029621	Arpc1a	0610010H08Rik|1110030K07Rik|41kDa|AA407347|Sid32|Sid329	actin related protein 2/3 complex, subunit 1A	protein-coding	0.060000	0.616915	
mm_168091.1	chr10	128059059	128059259	+	1	NA	NA	NA	177	NM_019766	56351	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3 (cytosolic)	protein-coding	0.140000	0.721393	
mm_63816.1	chr7	133776780	133776980	+	1	NA	NA	NA	-11	NM_025850	66930	Mm.87448	NM_025850	ENSMUSG00000053111	Fank1	1700007B22Rik|AI850911	fibronectin type 3 and ankyrin repeat domains 1	protein-coding	0.115000	0.726368	
mm_42042.1	chr5	108434353	108434553	+	1	NA	NA	NA	-75	NM_007507	11958	Mm.136093	NM_007507	ENSMUSG00000050856	Atp5k	2610008D24Rik|Atp5i|Lfm1	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	protein-coding	0.070000	0.592040	
mm_100379.1	chr11	119270135	119270335	+	1	NA	NA	NA	2272	NM_008064	14387	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.035000	0.547264	
mm_150136.1	chr19	30232831	30233031	+	1	NA	NA	NA	-26	NM_010776	17195	Mm.30045	NM_010776	ENSMUSG00000024863	Mbl2	L-MBP|MBL|MBL-C|MBP-C	mannose-binding lectin (protein C) 2	protein-coding	0.005000	0.442786	-33(CTTTTTAAAGTC,+,0.00)
mm_132730.1	chr16	43630223	43630423	+	1	NA	NA	NA	-10332	NR_030576	100124467		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.005000	0.378109	
mm_167762.1	chr9	110422626	110422826	-	1	NA	NA	NA	2918	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.010000	0.502488	
mm_168237.1	chr10	81704743	81704943	+	1	NA	NA	NA	18	NM_001243067	73610	Mm.490466	NM_001243067	ENSMUSG00000096795	Zfp433	1700123A16Rik	zinc finger protein 433	protein-coding	0.085000	0.661692	
mm_75346.1	chr8	43308318	43308518	-	1	NA	NA	NA	-1409	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.000000	0.452736	
mm_146213.1	chr18	76944318	76944518	+	1	NA	NA	NA	0	NM_001039201	76987	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	0.080000	0.641791	
mm_104597.1	chr11	97126873	97127073	-	1	NA	NA	NA	-11642	NM_019507	57765	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0.045000	0.552239	
mm_46280.1	chr5	100039798	100039998	-	1	NA	NA	NA	-96	NM_026421	67870	Mm.11311	NM_026421	ENSMUSG00000029326	Enoph1	2310057D15Rik|BB183658|C81437	enolase-phosphatase 1	protein-coding	0.110000	0.711443	
mm_106974.1	chr12	9029897	9030097	+	1	NA	NA	NA	0	NM_029321	75516	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0.095000	0.572139	
mm_127256.1	chr15	99702543	99702743	+	1	NA	NA	NA	356	NM_031842	83797	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.030000	0.646766	
mm_83772.1	chr9	52048746	52048946	-	1	NA	NA	NA	-141	NR_023357	629557	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.150000	0.716418	
mm_65273.1	chr7	24299244	24299444	-	1	NA	NA	NA	205	NM_009561	22719	Mm.12832	NM_009561	ENSMUSG00000050605	Zfp61	-	zinc finger protein 61	protein-coding	0.070000	0.587065	
mm_4339.1	chr1	171856422	171856622	+	1	NA	NA	NA	16825	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.328358	
mm_8213.1	chr1	138137028	138137228	-	1	NA	NA	NA	37998	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.393035	
mm_82423.1	chr9	14903794	14903994	-	1	NA	NA	NA	57	NM_176807	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.005000	0.487562	
mm_5729.1	chr1	44218857	44219057	-	1	NA	NA	NA	-26	NM_207281	403183	Mm.336176	NM_207281	ENSMUSG00000046828	Mettl21e	4832428D23Rik|Gm991	methyltransferase like 21E	protein-coding	0.000000	0.472637	
mm_106465.1	chr11	120070469	120070669	-	1	NA	NA	NA	16258	NM_009734	12009	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	0.050000	0.601990	
mm_58501.1	chr7	3712483	3712683	+	1	NA	NA	NA	7799	NM_011095	18733	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	0.005000	0.452736	
mm_24375.1	chr3	90220789	90220989	+	1	NA	NA	NA	105	NM_026677	68328	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	0.060000	0.626866	
mm_10746.1	chr2	23155867	23156067	+	1	NA	NA	NA	57	NM_025979	67121	Mm.253721	NM_025979	ENSMUSG00000026779	Mastl	2700091H24Rik|C88295|GW|GWL|MAST-L|THC2	microtubule associated serine/threonine kinase-like	protein-coding	0.130000	0.716418	
mm_63664.1	chr7	129591883	129592083	+	1	NA	NA	NA	120	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.110000	0.671642	
mm_162936.1	chr10	127676643	127676843	-	1	NA	NA	NA	-322	NM_173732	210035	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0.035000	0.457711	6(CCTTTTATGACA,+,0.00),62(CGTTTTTTAAGG,-,0.00)
mm_70626.1	chr8	13686580	13686780	+	1	NA	NA	NA	-9093	NM_009025	19414	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.020000	0.567164	
mm_75324.1	chr8	43141380	43141580	-	1	NA	NA	NA	6	NM_177742	244448	Mm.64542	NM_177742	ENSMUSG00000031651	Triml1	4933403D14|BC050188	tripartite motif family-like 1	protein-coding	0.005000	0.467662	
mm_31215.1	chr4	43977709	43977909	+	1	NA	NA	NA	-5695	NM_001002787	442829	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	0.005000	0.383085	
mm_33921.1	chr4	136610341	136610541	+	1	NA	NA	NA	4	NM_026300	67663	Mm.158168	NM_026300	ENSMUSG00000036921	4930549C01Rik	-	RIKEN cDNA 4930549C01 gene	protein-coding	0.020000	0.547264	-83(GGCCCTTAAGGC,-,0.00)
mm_134813.1	chr16	25045138	25045338	-	1	NA	NA	NA	-14401	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.010000	0.427861	-100(TGCTCTAAAAGG,-,0.00)
mm_81468.1	chr9	109896339	109896539	+	1	NA	NA	NA	6796	NR_106057	102465660		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	0.005000	0.393035	
mm_130338.1	chr15	97731201	97731401	-	1	NA	NA	NA	104	NM_001168693	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.030000	0.537313	-72(GTCTTTAAAAGG,-,0.00),-71(TCTTTAAAAGGA,+,0.00),47(CCTTTTATAGTG,+,0.00)
mm_34292.1	chr4	141573404	141573604	+	1	NA	NA	NA	26420	NM_001163256	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.020000	0.517413	-53(CCCCATATAAGG,-,0.00)
mm_104611.1	chr11	97237779	97237979	-	1	NA	NA	NA	42697	NM_008942	19155	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0.000000	0.323383	
mm_94214.1	chr11	3148718	3148918	+	1	NA	NA	NA	24797	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.010000	0.398010	
mm_65421.1	chr7	25278658	25278858	-	1	NA	NA	NA	-3421	NM_027882	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.060000	0.587065	
mm_141483.1	chr17	31208701	31208901	-	1	NA	NA	NA	735	NM_177823	328795	Mm.387930	NM_177823	ENSMUSG00000042345	Ubash3a	5830413C03Rik|C330001M22|Sts-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing, A	protein-coding	0.020000	0.517413	
mm_55853.1	chr6	83441538	83441738	-	1	NA	NA	NA	40	NM_183138	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.125000	0.776119	
mm_161845.1	chr18	7608882	7609082	-	1	NA	NA	NA	17881	NM_001081287	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0.120000	0.631841	
mm_107841.1	chr12	69296881	69297081	+	1	NA	NA	NA	300	NM_027117	69554	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0.115000	0.701493	
mm_150705.1	chr19	42518682	42518882	+	1	NA	NA	NA	-23	NM_177464	52013	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	0.125000	0.706468	
mm_134755.1	chr16	23225133	23225333	-	1	NA	NA	NA	493	NM_145933	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.105000	0.696517	
mm_18206.1	chr2	48457163	48457363	-	1	NA	NA	NA	-356846	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.010000	0.487562	
mm_140131.1	chr17	79615429	79615629	+	1	NA	NA	NA	629	NM_201361	381110	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.095000	0.741294	
mm_88286.1	chr10	75194631	75194831	+	1	NA	NA	NA	-17342	NM_153406	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.000000	0.402985	44(GGCTTTAAATAG,-,0.00),46(CTTTAAATAGTC,+,0.00)
mm_31541.1	chr4	55477778	55477978	+	1	NA	NA	NA	54597	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.010000	0.527363	
mm_15997.1	chr2	167129387	167129587	+	1	NA	NA	NA	59331	NM_008420	16500	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	0.035000	0.567164	
mm_129062.1	chr15	75567180	75567380	-	1	NA	NA	NA	-98	NM_011837	23934	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	0.045000	0.592040	
mm_38766.1	chr4	147904595	147904795	-	1	NA	NA	NA	3	NM_001285923	170731	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0.115000	0.731343	
mm_57084.1	chr6	122583493	122583693	-	1	NA	NA	NA	18851	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.010000	0.512438	
mm_154970.1	chrX	37143873	37144073	+	1	NA	NA	NA	17210	NM_025937	67050	Mm.55422	NM_025937	ENSMUSG00000016409	Nkap	2610020O08Rik|AA987160|AI849147|AL024236	NFKB activating protein	protein-coding	0.020000	0.412935	
mm_32081.1	chr4	98395682	98395882	+	1	NA	NA	NA	-44	NM_001005784	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.110000	0.751244	
mm_168374.1	chr11	21259076	21259276	+	1	NA	NA	NA	20144	NM_001290628	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.010000	0.383085	
mm_166597.1	chr6	67035415	67035615	-	1	NA	NA	NA	-1084	NR_040278	320172	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0.020000	0.477612	
mm_136756.1	chr17	8663741	8663941	+	1	NA	NA	NA	137040	NM_001290707	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.000000	0.462687	
mm_115124.1	chr13	104287042	104287242	+	1	NA	NA	NA	-693	NR_136938	108154	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.015000	0.477612	
mm_25251.1	chr3	104638567	104638767	+	1	NA	NA	NA	3	NM_009196	20501	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.115000	0.741294	
mm_137175.1	chr17	23815961	23816161	+	1	NA	NA	NA	12874	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.045000	0.572139	
mm_164716.1	chr17	56120105	56120305	+	1	NA	NA	NA	1741	NM_029796	76905	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0.075000	0.631841	
mm_132147.1	chr16	32099948	32100148	+	1	NA	NA	NA	246	NM_025892	66994	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0.030000	0.532338	
mm_11605.1	chr2	33825003	33825203	+	1	NA	NA	NA	19287	NR_045729	320482	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0.015000	0.522388	
mm_144375.1	chr18	20558047	20558247	+	1	NA	NA	NA	73	NM_007883	13511	Mm.345891	NM_007883	ENSMUSG00000044393	Dsg2	AA408168|D18Ertd293e	desmoglein 2	protein-coding	0.080000	0.711443	
mm_55558.1	chr6	71322460	71322660	-	1	NA	NA	NA	-252	NM_009858	12526	Mm.333148	NM_009858	ENSMUSG00000053044	Cd8b1	Cd8b|Ly-3|Ly-C|Lyt-3	CD8 antigen, beta chain 1	protein-coding	0.005000	0.517413	
mm_19074.1	chr2	77816642	77816842	-	1	NA	NA	NA	74	NM_178723	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.155000	0.791045	
mm_146216.1	chr18	77006634	77006834	+	1	NA	NA	NA	40562	NM_027721	71206	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	0.015000	0.527363	
mm_117215.1	chr13	64089326	64089526	-	1	NA	NA	NA	-225	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.005000	0.467662	-81(GGCTTTTAATGC,-,0.00)
mm_71995.1	chr8	70617999	70618199	+	1	NA	NA	NA	1255	NM_153074	211228	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0.030000	0.631841	
mm_121542.1	chr14	122474352	122474552	+	1	NA	NA	NA	747	NR_045046	69248	Mm.235369	NR_045046	ENSMUSG00000085555	2610035F20Rik	-	RIKEN cDNA 2610035F20 gene	ncRNA	0.075000	0.592040	
mm_86715.1	chr10	19008786	19008986	+	1	NA	NA	NA	3077	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.005000	0.512438	-33(GCTTATAAAGTA,+,0.00)
mm_161308.1	chr14	34819814	34820014	+	1	NA	NA	NA	-222	NM_008166	14803	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	0.165000	0.805970	
mm_64167.1	chr7	141447550	141447750	+	1	NA	NA	NA	0	NM_026020	67186	Mm.380435	NM_026020	ENSMUSG00000025508	Rplp2	2700049I22Rik	ribosomal protein, large P2	protein-coding	0.135000	0.706468	
mm_135883.1	chr16	64602243	64602443	-	1	NA	NA	NA	-123209	NM_173861	224291	Mm.246580	NM_173861	ENSMUSG00000068167	Csnka2ip	Ckt2	casein kinase 2, alpha prime interacting protein	protein-coding	0.005000	0.457711	
mm_70920.1	chr8	25785463	25785663	+	1	NA	NA	NA	-28	NM_026032	67207	Mm.30198	NM_026032	ENSMUSG00000037296	Lsm1	2810025O06Rik|CASM	LSM1 homolog, mRNA degradation associated	protein-coding	0.150000	0.716418	
mm_36994.1	chr4	110286530	110286730	-	1	NA	NA	NA	204	NM_010488	15572	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein-coding	0.030000	0.457711	-27(CCTCATAAAAAG,-,0.00)
mm_152140.1	chr19	7090651	7090851	-	1	NA	NA	NA	14978	NM_201411	396184	Mm.386930	NM_201411	ENSMUSG00000047787	Flrt1	AW742165|D630040I23Rik	fibronectin leucine rich transmembrane protein 1	protein-coding	0.010000	0.402985	
mm_105460.1	chr11	104550520	104550720	-	1	NA	NA	NA	0	NM_001285990	217232	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	0.085000	0.567164	
mm_157593.1	chrX	53209687	53209887	-	1	NA	NA	NA	60018	NM_030167	78755	Mm.28559	NM_030167	ENSMUSG00000036022	Fam122b	4632404H22Rik|AI256344|SPACIA2	family with sequence similarity 122, member B	protein-coding	0.015000	0.512438	
mm_30026.1	chr3	135667718	135667918	-	1	NA	NA	NA	23729	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.010000	0.442786	
mm_102021.1	chr11	51644279	51644479	-	1	NA	NA	NA	-6575	NR_027958	97775	Mm.220299	NM_175289	ENSMUSG00000052563	D930048N14Rik	AI315703|R75254	RIKEN cDNA D930048N14 gene	ncRNA	0.060000	0.641791	
mm_124220.1	chr14	100284577	100284777	-	1	NA	NA	NA	-134881	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.075000	0.706468	
mm_164005.1	chr14	66978343	66978543	-	1	NA	NA	NA	30434	NM_009761	12177	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0.010000	0.512438	
mm_164120.1	chr15	37024616	37024816	+	1	NA	NA	NA	-17314	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.000000	0.522388	
mm_58992.1	chr7	19131598	19131798	+	1	NA	NA	NA	11839	NM_175530	243867	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0.120000	0.721393	
mm_124882.1	chr15	10249474	10249674	+	1	NA	NA	NA	25668	NM_001253781	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.005000	0.527363	
mm_44254.1	chr5	5420153	5420353	-	1	NA	NA	NA	-40002	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.025000	0.547264	
mm_27892.1	chr3	79287150	79287350	-	1	NA	NA	NA	-58126	NM_001142953	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.115000	0.721393	
mm_92643.1	chr10	80348540	80348740	-	1	NA	NA	NA	-192	NR_104340	66548	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0.085000	0.691542	
mm_36523.1	chr4	84675285	84675485	-	1	NA	NA	NA	-299	NM_172870	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.100000	0.696517	-53(CCCTAGAAAAGC,-,0.00)
mm_169493.1	chr14	75372372	75372572	-	1	NA	NA	NA	15674	NR_030568	100124475		NR_030568	ENSMUSG00000077981	Mir466f-3	Mirn466f-3	microRNA 466f-3	ncRNA	0.010000	0.527363	
mm_104095.1	chr11	86683881	86684081	-	1	NA	NA	NA	-2	NM_175004	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.090000	0.577114	
mm_166239.1	chr5	73021899	73022099	+	1	NA	NA	NA	15095	NM_173403	231290	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	0.010000	0.442786	-31(GTTCCTAAAAGG,-,0.00)
mm_3483.1	chr1	150105548	150105748	+	1	NA	NA	NA	5617	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.467662	
mm_65650.1	chr7	28115255	28115455	-	1	NA	NA	NA	-14111	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.005000	0.432836	
mm_22982.1	chr3	32820099	32820299	+	1	NA	NA	NA	2573	NM_001013024	72607	Mm.316153	NM_001013024	ENSMUSG00000056900	Usp13	2700071E21Rik|AI848077|ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding	0.000000	0.383085	
mm_2648.1	chr1	125560953	125561153	+	1	NA	NA	NA	37	NM_028787	74150	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0.100000	0.751244	
mm_74299.1	chr8	126029229	126029429	+	1	NA	NA	NA	34227	NM_008430	16525	Mm.10800	NM_008430	ENSMUSG00000033998	Kcnk1	AI788889|TWIK-1	potassium channel, subfamily K, member 1	protein-coding	0.040000	0.537313	
mm_134716.1	chr16	22895212	22895412	-	1	NA	NA	NA	-926	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.035000	0.492537	
mm_97103.1	chr11	73390000	73390200	+	1	NA	NA	NA	9395	NM_146921	258923	Mm.246523	NM_146921	ENSMUSG00000069823	Olfr1	I54|MOR135-13	olfactory receptor 1	protein-coding	0.010000	0.492537	
mm_167859.1	chrX	13358170	13358370	+	1	NA	NA	NA	77248	NM_010028	13205	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	0.005000	0.417910	
mm_160586.1	chr9	64340905	64341105	-	1	NA	NA	NA	-232	NM_001177784	213550	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	0.110000	0.726368	
mm_26376.1	chr3	142566242	142566442	+	1	NA	NA	NA	5846	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.010000	0.378109	
mm_139645.1	chr17	57384950	57385150	+	1	NA	NA	NA	26364	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.010000	0.477612	
mm_147527.1	chr18	52529799	52529999	-	1	NA	NA	NA	-32	NM_001286182	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.025000	0.507463	
mm_56652.1	chr6	113431888	113432088	-	1	NA	NA	NA	3767	NM_178373	14311	Mm.10026	NM_178373	ENSMUSG00000030278	Cidec	CIDE-3|Fsp27	cell death-inducing DFFA-like effector c	protein-coding	0.005000	0.388060	
mm_99499.1	chr11	102896665	102896865	+	1	NA	NA	NA	435	NM_001131020	14580	Mm.1239	NM_010277	ENSMUSG00000020932	Gfap	AI836096	glial fibrillary acidic protein	protein-coding	0.050000	0.621891	
mm_151316.1	chr19	55868093	55868293	+	1	NA	NA	NA	-27128	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.010000	0.487562	-35(ACCTATAAAAGG,-,0.00)
mm_143620.1	chr17	78853106	78853306	-	1	NA	NA	NA	-662	NR_003363	625054	Mm.311918	NR_003363		Gm6548	EG625054	eukaryotic translation elongation factor 1 alpha 1 pseudogene	pseudo	0.005000	0.432836	
mm_72864.1	chr8	88583100	88583300	+	1	NA	NA	NA	52928	NM_027840	71607	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	0.020000	0.601990	
mm_172102.1	chr6	31142619	31142819	-	1	NA	NA	NA	75755	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.050000	0.532338	
mm_35185.1	chr4	15958331	15958531	-	1	NA	NA	NA	464	NM_013752	27354	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	0.085000	0.587065	
mm_70162.1	chr7	143569088	143569288	-	1	NA	NA	NA	1571	NR_106031	102465644		NR_106031	ENSMUSG00000098593	Mir7064	Gm27632|mmu-mir-7064	microRNA 7064	ncRNA	0.010000	0.532338	
mm_42860.1	chr5	122219742	122219942	+	1	NA	NA	NA	9555	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.020000	0.542289	
mm_80756.1	chr9	95554416	95554616	+	1	NA	NA	NA	-5301	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.025000	0.512438	
mm_67426.1	chr7	80368752	80368952	-	1	NA	NA	NA	2523	NM_172903	140481	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	0.040000	0.597015	
mm_25716.1	chr3	122728910	122729110	+	1	NA	NA	NA	-148	NM_153422	242202	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	0.100000	0.726368	
mm_109936.1	chr12	11204215	11204415	-	1	NA	NA	NA	187	NR_131084	77442	Mm.159922	NR_131083		9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	0.020000	0.507463	
mm_79071.1	chr9	46240815	46241015	+	1	NA	NA	NA	71	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.015000	0.577114	
mm_1431.1	chr1	67186799	67186999	+	1	NA	NA	NA	63872	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.323383	
mm_114408.1	chr13	64183793	64183993	+	1	NA	NA	NA	22027	NM_019986	56541	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	0.005000	0.447761	
mm_98743.1	chr11	96464512	96464712	+	1	NA	NA	NA	21	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.140000	0.776119	
mm_170726.1	chr2	150786705	150786905	+	1	NA	NA	NA	9	NM_153781	110078	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.085000	0.656716	
mm_72097.1	chr8	71591775	71591975	+	1	NA	NA	NA	-309	NM_025396	66171	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	0.055000	0.552239	
mm_63470.1	chr7	127588665	127588865	+	1	NA	NA	NA	67	NM_172281	233900	Mm.41122	NM_172281	ENSMUSG00000030816	Rnf40	AI848422|mKIAA0661	ring finger protein 40	protein-coding	0.095000	0.626866	
mm_39520.1	chr5	21257844	21258044	+	1	NA	NA	NA	71677	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.020000	0.482587	
mm_48064.1	chr5	136567433	136567633	-	1	NA	NA	NA	-43	NM_001291238	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.160000	0.776119	
mm_8767.1	chr1	160793105	160793305	-	1	NA	NA	NA	-267	NM_013862	29809	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0.040000	0.542289	
mm_131410.1	chr16	14471944	14472144	+	1	NA	NA	NA	-90273	NR_033556	545280	Mm.123679	NR_033556	ENSMUSG00000075395	A630010A05Rik	-	RIKEN cDNA A630010A05 gene	ncRNA	0.010000	0.512438	
mm_96484.1	chr11	67684581	67684781	+	1	NA	NA	NA	-10645	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.010000	0.452736	6(TCCTCTAAATGC,-,0.00)
mm_128420.1	chr15	45114802	45115002	-	1	NA	NA	NA	32	NM_026200	67498	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding	0.050000	0.577114	
mm_150026.1	chr19	29373542	29373742	+	1	NA	NA	NA	6204	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.035000	0.517413	
mm_157813.1	chrX	73966652	73966852	-	1	NA	NA	NA	-395	NM_008224	15161	Mm.491126	NM_008224	ENSMUSG00000031386	Hcfc1	AW060991|HCF|HCF1	host cell factor C1	protein-coding	0.050000	0.611940	
mm_7772.1	chr1	131233570	131233770	-	1	NA	NA	NA	11508	NM_018750	54354	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.030000	0.542289	
mm_70479.1	chr8	12395537	12395737	+	1	NA	NA	NA	118	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.130000	0.731343	
mm_110490.1	chr12	52395203	52395403	-	1	NA	NA	NA	85306	NR_136881	102638611	Mm.363799	NR_136881		Gm35135	-	predicted gene, 35135	ncRNA	0.015000	0.487562	
mm_142729.1	chr17	48300816	48301016	-	1	NA	NA	NA	878	NM_001033405	328833	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0.020000	0.452736	
mm_21112.1	chr2	153444367	153444567	-	1	NA	NA	NA	12	NM_001001986	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.120000	0.786070	
mm_65975.1	chr7	30442192	30442392	-	1	NA	NA	NA	3290	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.015000	0.587065	
mm_84687.1	chr9	72111761	72111961	-	1	NA	NA	NA	-42	NM_001253865	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.125000	0.691542	
mm_166825.1	chr7	18483991	18484191	-	1	NA	NA	NA	58	NM_001029893	574429	Mm.296754	NM_001029893	ENSMUSG00000070799	Psg26	EG574429|cea14	pregnancy-specific glycoprotein 26	protein-coding	0.005000	0.527363	
mm_157794.1	chrX	73869739	73869939	-	1	NA	NA	NA	10995	NM_008478	16728	Mm.260568	NM_008478	ENSMUSG00000031391	L1cam	CD171|L1|N-CAM-L1|NCAM-L1	L1 cell adhesion molecule	protein-coding	0.035000	0.611940	
mm_49981.1	chr6	40964671	40964871	+	1	NA	NA	NA	-1	NM_023707	73626	Mm.425319	NM_023707	ENSMUSG00000094808	1810009J06Rik	-	RIKEN cDNA 1810009J06 gene	protein-coding	0.005000	0.343284	
mm_135733.1	chr16	55831226	55831426	-	1	NA	NA	NA	7315	NM_030612	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.010000	0.467662	
mm_55641.1	chr6	72345039	72345239	-	1	NA	NA	NA	36	NM_138592	28035	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	0.100000	0.631841	
mm_101496.1	chr11	31824372	31824572	-	1	NA	NA	NA	75	NR_102310	414116	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.015000	0.532338	
mm_83449.1	chr9	45011350	45011550	-	1	NA	NA	NA	-1860	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.015000	0.582090	
mm_6068.1	chr1	60898555	60898755	-	1	NA	NA	NA	-10370	NM_009843	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.005000	0.422886	
mm_103183.1	chr11	70514512	70514712	-	1	NA	NA	NA	4	NM_001013607	327956	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	0.010000	0.502488	
mm_93578.1	chr10	116896832	116897032	-	1	NA	NA	NA	-53	NM_001033333	237558	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	0.015000	0.388060	
mm_119620.1	chr14	51128887	51129087	+	1	NA	NA	NA	-81	NM_030098	78416	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	0.010000	0.457711	
mm_25658.1	chr3	121571728	121571928	+	1	NA	NA	NA	-39484	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.000000	0.512438	
mm_19500.1	chr2	93462274	93462474	-	1	NA	NA	NA	128	NM_001271430	12521	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.060000	0.606965	
mm_81819.1	chr9	118041060	118041260	+	1	NA	NA	NA	638	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.050000	0.507463	
mm_114813.1	chr13	91564227	91564427	+	1	NA	NA	NA	103230	NM_024186	66970	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.010000	0.402985	
mm_21935.1	chr2	167056720	167056920	-	1	NA	NA	NA	-6114	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.010000	0.532338	
mm_15117.1	chr2	153686528	153686728	+	1	NA	NA	NA	37179	NM_001271747	13436	Mm.89772	NM_010068	ENSMUSG00000027478	Dnmt3b	MmuIIIB	DNA methyltransferase 3B	protein-coding	0.015000	0.532338	
mm_87684.1	chr10	59268224	59268424	+	1	NA	NA	NA	46402	NM_172939	268301	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.015000	0.522388	
mm_31172.1	chr4	43466062	43466262	+	1	NA	NA	NA	-11536	NM_007654	12517	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.025000	0.522388	
mm_160310.1	chr7	141064358	141064558	+	1	NA	NA	NA	3184	NM_177897	330671	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.020000	0.582090	
mm_23606.1	chr3	65449437	65449637	+	1	NA	NA	NA	-56984	NM_026155	67437	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.005000	0.487562	
mm_1491.1	chr1	71887822	71888022	+	1	NA	NA	NA	-190	NR_027658	667931	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	0.000000	0.517413	
mm_128912.1	chr15	73621948	73622148	-	1	NA	NA	NA	2696	NM_001033219	106068	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.005000	0.363184	
mm_115341.1	chr13	112507279	112507479	+	1	NA	NA	NA	43309	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.010000	0.437811	
mm_170886.1	chr2	22410628	22410828	-	1	NA	NA	NA	183225	NM_148413	667663	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding	0.055000	0.522388	
mm_151151.1	chr19	53140537	53140737	+	1	NA	NA	NA	194	NM_001164101	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.065000	0.597015	
mm_55219.1	chr6	52229988	52230188	-	1	NA	NA	NA	77	NR_029912	723820		NR_029912	ENSMUSG00000065443	Mir196b	Mirn196b|mir-196b	microRNA 196b	ncRNA	0.045000	0.562189	
mm_154426.1	chrM	332	532	-	1	NA	NA	NA	NA	NA									0.025000	0.308458	
mm_127294.1	chr15	100156877	100157077	+	1	NA	NA	NA	2581	NM_172819	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.010000	0.472637	
mm_168241.1	chr10	81853182	81853382	-	1	NA	NA	NA	-10652	NM_001243067	73610	Mm.490466	NM_001243067	ENSMUSG00000096795	Zfp433	1700123A16Rik	zinc finger protein 433	protein-coding	0.040000	0.427861	
mm_11351.1	chr2	30845396	30845596	+	1	NA	NA	NA	129	NM_009116	20204	Mm.1802	NM_009116	ENSMUSG00000039476	Prrx2	Prx2|S8	paired related homeobox 2	protein-coding	0.135000	0.800995	
mm_161411.1	chr15	11037865	11038065	-	1	NA	NA	NA	3	NM_178717	239336	Mm.209312	NM_178717	ENSMUSG00000060735	Rxfp3	BC053073|GPCR135|Rln3r1|Salpr	relaxin family peptide receptor 3	protein-coding	0.045000	0.532338	
mm_88670.1	chr10	80017601	80017801	+	1	NA	NA	NA	786	NM_001347074	70719	Mm.243954	NM_027521	ENSMUSG00000035697	Hmha1	6330406L22Rik|AW539505|Ha-1	histocompatibility (minor) HA-1	protein-coding	0.005000	0.552239	
mm_128212.1	chr15	36164271	36164471	-	1	NA	NA	NA	513	NM_001081253	78803	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	0.010000	0.308458	
mm_84536.1	chr9	67261997	67262197	-	1	NA	NA	NA	-25371	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	0.010000	0.547264	
mm_68768.1	chr7	121947040	121947240	-	1	NA	NA	NA	34553	NM_001033318	233824	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0.000000	0.293532	
mm_72485.1	chr8	83666547	83666747	+	1	NA	NA	NA	7	NM_013641	19216	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	42kDa|EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	0.020000	0.601990	
mm_91820.1	chr10	55992279	55992479	-	1	NA	NA	NA	-114538	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding	0.010000	0.313433	
mm_172639.1	chr8	23411365	23411565	+	1	NA	NA	NA	-37	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding	0.145000	0.716418	
mm_129626.1	chr15	80133949	80134149	-	1	NA	NA	NA	895	NM_025609	66513	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	0.010000	0.542289	-44(CCCTTGAAAAGC,-,0.00)
mm_59148.1	chr7	24369869	24370069	+	1	NA	NA	NA	-294	NM_001163510	16534	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0.020000	0.572139	
mm_37629.1	chr4	127353980	127354180	-	1	NA	NA	NA	1	NM_008127	14621	Mm.56906	NM_008127	ENSMUSG00000046623	Gjb4	Cnx30.3|Cx30.3|Gjb-4	gap junction protein, beta 4	protein-coding	0.035000	0.621891	
mm_107278.1	chr12	29535093	29535293	+	1	NA	NA	NA	288	NM_001093776	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.050000	0.532338	
mm_75816.1	chr8	70353190	70353390	-	1	NA	NA	NA	-11	NM_001122829	19704	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	0.200000	0.766169	
mm_75803.1	chr8	70139130	70139330	-	1	NA	NA	NA	-33	NM_001025589	19727	Mm.161167	NM_011266	ENSMUSG00000036120	Rfxank	Tvl1	regulatory factor X-associated ankyrin-containing protein	protein-coding	0.065000	0.532338	24(CAGTCTTAAAGC,-,0.00)
mm_97735.1	chr11	80428527	80428727	+	1	NA	NA	NA	12	NM_178616	69077	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	0.110000	0.686567	
mm_73484.1	chr8	107031124	107031324	+	1	NA	NA	NA	-102	NM_126165	116733	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0.100000	0.716418	-7(CCCTCTTAGAGG,-,0.00),-6(CCTCTTAGAGGA,+,0.00)
mm_24147.1	chr3	88326329	88326529	+	1	NA	NA	NA	1406	NM_020003	56700	Mm.439922	NM_020003	ENSMUSG00000001418	Glmp	0610031J06Rik|AB027141|NCU-G1	glycosylated lysosomal membrane protein	protein-coding	0.015000	0.552239	-11(CCTTTTCTAGAT,+,0.00)
mm_146934.1	chr18	32134575	32134775	-	1	NA	NA	NA	3530	NM_008934	19123	Mm.2786	NM_008934	ENSMUSG00000024386	Proc	PC	protein C	protein-coding	0.000000	0.487562	-88(TCCTTTATGGAG,+,0.00)
mm_143585.1	chr17	74402562	74402762	-	1	NA	NA	NA	7054	NM_144798	210148	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	0.005000	0.507463	
mm_148027.1	chr18	69593217	69593417	-	1	NA	NA	NA	247596	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.090000	0.616915	
mm_45593.1	chr5	74702770	74702970	-	1	NA	NA	NA	33	NM_001159577	16924	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.025000	0.517413	
mm_66460.1	chr7	44892583	44892783	-	1	NA	NA	NA	-259	NM_001331206	75613	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	0.070000	0.472637	
mm_2421.1	chr1	95313591	95313791	+	1	NA	NA	NA	63	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.145000	0.751244	
mm_103078.1	chr11	69895442	69895642	-	1	NA	NA	NA	-3	NM_153788	216859	Mm.288671	NM_153788	ENSMUSG00000001588	Acap1	Centb1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein-coding	0.010000	0.606965	
mm_108002.1	chr12	73525894	73526094	+	1	NA	NA	NA	20401	NM_178715	238257	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	0.030000	0.507463	3(CCTCTTAGGGCC,+,0.00)
mm_97011.1	chr11	70971057	70971257	+	1	NA	NA	NA	957	NM_001252415	69723	Mm.275691	NM_027186	ENSMUSG00000018449	Rpain	2400006N03Rik|Rip	RPA interacting protein	protein-coding	0.015000	0.457711	
mm_4507.1	chr1	174172660	174172860	+	1	NA	NA	NA	-16	NM_011465	20739	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding	0.010000	0.472637	
mm_53424.1	chr6	134035863	134036063	+	1	NA	NA	NA	263	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.140000	0.706468	
mm_6871.1	chr1	84284384	84284584	-	1	NA	NA	NA	161	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.110000	0.711443	
mm_111180.1	chr12	83921806	83922006	-	1	NA	NA	NA	28	NR_073563	18222	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	numb homolog (Drosophila)	protein-coding	0.060000	0.631841	
mm_44325.1	chr5	9725378	9725578	-	1	NA	NA	NA	-126	NM_181850	108069	Mm.318966	NM_181850	ENSMUSG00000003974	Grm3	0710001G23Rik|Gprc1c|mGlu3|mGluR3	glutamate receptor, metabotropic 3	protein-coding	0.015000	0.606965	
mm_82549.1	chr9	20941693	20941893	-	1	NA	NA	NA	10830	NM_001199433	13433	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0.000000	0.393035	
mm_132029.1	chr16	27388885	27389085	+	1	NA	NA	NA	29	NM_001289436	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.140000	0.776119	
mm_2653.1	chr1	125676892	125677092	+	1	NA	NA	NA	-4	NM_027677	71111	Mm.32727	NM_027677	ENSMUSG00000026343	Gpr39	4933415E13Rik	G protein-coupled receptor 39	protein-coding	0.030000	0.592040	
mm_108830.1	chr12	95750231	95750431	+	1	NA	NA	NA	58105	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.005000	0.328358	
mm_113047.1	chr13	23581466	23581666	+	1	NA	NA	NA	-36	NM_175654	319156	Mm.260530	NM_175654	ENSMUSG00000061482	Hist1h4d	-	histone cluster 1, H4d	protein-coding	0.045000	0.532338	-33(TATTATAAAAGC,-,0.00)
mm_120897.1	chr14	75845866	75846066	+	1	NA	NA	NA	710	NM_009429	22070	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	0.085000	0.582090	
mm_59459.1	chr7	27196329	27196529	+	1	NA	NA	NA	-158	NM_001285825	53607	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0.045000	0.527363	
mm_37331.1	chr4	119540301	119540501	-	1	NA	NA	NA	740	NM_172699	230700	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	0.045000	0.577114	
mm_116673.1	chr13	49215781	49215981	-	1	NA	NA	NA	145	NM_026738	68480	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.160000	0.786070	
mm_125980.1	chr15	76331150	76331350	+	1	NA	NA	NA	-44	NM_010331	14731	Mm.5903	NM_010331	ENSMUSG00000022561	Gpaa1	C80044|mGAA1	GPI anchor attachment protein 1	protein-coding	0.070000	0.601990	
mm_20767.1	chr2	142838123	142838323	-	1	NA	NA	NA	63241	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.005000	0.482587	-97(AACTCTAAAAGG,-,0.00)
mm_84414.1	chr9	65567619	65567819	-	1	NA	NA	NA	12368	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.005000	0.447761	
mm_85610.1	chr9	107605173	107605373	-	1	NA	NA	NA	129	NM_009153	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.035000	0.651741	
mm_84190.1	chr9	60449601	60449801	-	1	NA	NA	NA	61334	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.005000	0.552239	
mm_36954.1	chr4	109131420	109131620	-	1	NA	NA	NA	-13484	NM_001134791	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.020000	0.447761	
mm_164538.1	chr17	6827881	6828081	+	1	NA	NA	NA	-45201	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.115000	0.656716	-33(CAGTATAAAAGC,-,0.00)
mm_161565.1	chr16	18590488	18590688	-	1	NA	NA	NA	83	NM_001285472	21380	Mm.295194	NM_011532	ENSMUSG00000009097	Tbx1	-	T-box 1	protein-coding	0.095000	0.661692	
mm_81375.1	chr9	108854625	108854825	+	1	NA	NA	NA	682	NM_134420	171429	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.040000	0.592040	-40(CCCTTTAAGAAG,-,0.00)
mm_116280.1	chr13	34963731	34963931	-	1	NA	NA	NA	-22	NM_026947	69123	Mm.482475	NM_026947	ENSMUSG00000021416	Eci3	1810022C23Rik|Kseg2	enoyl-Coenzyme A delta isomerase 3	protein-coding	0.035000	0.547264	
mm_6598.1	chr1	75316912	75317112	-	1	NA	NA	NA	5	NM_016878	13437	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	0.060000	0.597015	
mm_162535.1	chr1	167284746	167284946	-	1	NA	NA	NA	281	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.140000	0.741294	
mm_162847.1	chr10	86348340	86348540	+	1	NA	NA	NA	48028	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.000000	0.378109	
mm_41122.1	chr5	87784440	87784640	+	1	NA	NA	NA	10090	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.000000	0.348259	76(GATTTTTAAAGC,-,0.00)
mm_134479.1	chr16	18621530	18621730	-	1	NA	NA	NA	773	NM_001001999	14724	Mm.475622	NM_010327	ENSMUSG00000050761	Gp1bb	-	glycoprotein Ib, beta polypeptide	protein-coding	0.065000	0.601990	
mm_92414.1	chr10	76816626	76816826	-	1	NA	NA	NA	-90682	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.015000	0.587065	
mm_15221.1	chr2	154436367	154436567	+	1	NA	NA	NA	-17	NM_172860	12396	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	0.185000	0.820896	
mm_56867.1	chr6	118455397	118455597	-	1	NA	NA	NA	9	NM_028335	72720	Mm.212572	NM_028335	ENSMUSG00000030145	Zfp248	2810037F07Rik|E130106N01Rik	zinc finger protein 248	protein-coding	0.070000	0.636816	
mm_97309.1	chr11	76679814	76680014	+	1	NA	NA	NA	41	NM_177709	237858	Mm.127006	NM_177709	ENSMUSG00000046275	Tusc5	C130069F04Rik|DSPB1|Lost1	tumor suppressor candidate 5	protein-coding	0.040000	0.587065	
mm_153582.1	chr19	43500385	43500585	-	1	NA	NA	NA	24120	NM_010324	14718	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.050000	0.512438	
mm_158240.1	chrX	106603509	106603709	-	1	NA	NA	NA	70	NM_001281862	58861	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	0.015000	0.487562	
mm_161054.1	chr12	55599030	55599230	+	1	NA	NA	NA	213	NM_020287	56856	Mm.114886	NM_020287	ENSMUSG00000045440	Insm2	Mlt1	insulinoma-associated 2	protein-coding	0.120000	0.696517	
mm_19257.1	chr2	84774770	84774970	-	1	NA	NA	NA	559	NM_009776	12258	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.035000	0.646766	
mm_38104.1	chr4	134401965	134402165	-	1	NA	NA	NA	-847	NM_001285874	100163	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	0.030000	0.601990	
mm_134877.1	chr16	28929856	28930056	-	1	NA	NA	NA	-258	NM_177718	239796	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.100000	0.696517	
mm_172487.1	chr7	52815706	52815906	+	1	NA	NA	NA	-800090	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	0.060000	0.656716	
mm_15045.1	chr2	152830720	152830920	+	1	NA	NA	NA	-103	NM_001289739	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.040000	0.512438	
mm_89067.1	chr10	82897393	82897593	+	1	NA	NA	NA	30867	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.000000	0.388060	
mm_172569.1	chr8	111854174	111854374	-	1	NA	NA	NA	36	NM_011801	23837	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	0.060000	0.597015	
mm_110630.1	chr12	57542245	57542445	-	1	NA	NA	NA	3776	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.060000	0.636816	
mm_32134.1	chr4	99194159	99194359	+	1	NA	NA	NA	112	NM_001145967	242557	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.100000	0.666667	
mm_24164.1	chr3	88532639	88532839	+	1	NA	NA	NA	344	NM_001029890	72640	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0.150000	0.761194	
mm_83479.1	chr9	45906303	45906503	-	1	NA	NA	NA	-166	NM_008794	18554	Mm.3255	NM_008794	ENSMUSG00000035382	Pcsk7	AA959856|PC7|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding	0.155000	0.825871	
mm_166379.1	chr5	130213644	130213844	+	1	NA	NA	NA	-6000	NM_001081394	71667	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0.010000	0.328358	
mm_124560.1	chr14	123283861	123284061	-	1	NA	NA	NA	114775	NR_045144	380934	Mm.393838	NR_045143		AA536875	Gm1591	expressed sequence AA536875	ncRNA	0.000000	0.268657	
mm_35880.1	chr4	49538158	49538358	-	1	NA	NA	NA	11288	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.005000	0.487562	
mm_28086.1	chr3	85037855	85038055	-	1	NA	NA	NA	85744	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.000000	0.472637	
mm_96364.1	chr11	67170965	67171165	+	1	NA	NA	NA	38	NM_001039545	17882	Mm.422801	NM_144961	ENSMUSG00000033196	Myh2	MHC2A|MyHC-IIa|Myh2a|Myhs-f|Myhs-f1|Myhsf1	myosin, heavy polypeptide 2, skeletal muscle, adult	protein-coding	0.025000	0.507463	-31(CCATATAAAAGA,-,0.00),5(TGCTTTAAAAAG,-,0.00),6(GCTTTAAAAAGC,+,0.00),7(CTTTAAAAAGCT,+,0.00)
mm_41469.1	chr5	91140955	91141155	+	1	NA	NA	NA	1456	NM_009704	11839	Mm.8039	NM_009704	ENSMUSG00000029378	Areg	AR|Mcub|Sdgf	amphiregulin	protein-coding	0.025000	0.487562	
mm_165835.1	chr3	154711326	154711526	+	1	NA	NA	NA	293	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.005000	0.388060	
mm_160143.1	chr7	35449129	35449329	+	1	NA	NA	NA	50	NM_021291	30962	Mm.45874	NM_021291	ENSMUSG00000030492	Slc7a9	CSNU3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	protein-coding	0.010000	0.442786	
mm_140102.1	chr17	78508024	78508224	+	1	NA	NA	NA	61	NM_028813	74199	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik	vitrin	protein-coding	0.015000	0.467662	
mm_83448.1	chr9	45009770	45009970	-	1	NA	NA	NA	-280	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.020000	0.522388	
mm_26938.1	chr3	20263681	20263881	-	1	NA	NA	NA	11952	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.020000	0.398010	
mm_127607.1	chr15	102446582	102446782	+	1	NA	NA	NA	1315	NM_144547	110542	Mm.60331	NM_144547	ENSMUSG00000023047	Amhr2	Misiir|Misrii|Mrii	anti-Mullerian hormone type 2 receptor	protein-coding	0.015000	0.557214	
mm_150130.1	chr19	30030568	30030768	+	1	NA	NA	NA	155	NM_144873	109113	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0.160000	0.771144	
mm_155117.1	chrX	48624458	48624658	+	1	NA	NA	NA	884	NM_001166450	20523	Mm.34953	NM_011398	ENSMUSG00000031105	Slc25a14	BMCP1|UCP5|UCP5L|UCP5S	solute carrier family 25 (mitochondrial carrier, brain), member 14	protein-coding	0.010000	0.373134	
mm_52816.1	chr6	121346560	121346760	+	1	NA	NA	NA	-37	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.025000	0.567164	
mm_15071.1	chr2	153108379	153108579	+	1	NA	NA	NA	11	NM_010407	15162	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.055000	0.636816	-55(GGCTCTTAGAGG,-,0.00),-54(GCTCTTAGAGGG,+,0.00)
mm_115326.1	chr13	112464023	112464223	+	1	NA	NA	NA	53	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.110000	0.746269	
mm_86988.1	chr10	25489544	25489744	+	1	NA	NA	NA	46628	NM_001195596	100504474	Mm.46323	NM_001195596	ENSMUSG00000096546	Smlr1	2010003K15Rik	small leucine-rich protein 1	protein-coding	0.000000	0.363184	
mm_2570.1	chr1	118459504	118459704	+	1	NA	NA	NA	-339	NR_027901	68204	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.070000	0.587065	
mm_131928.1	chr16	23609828	23610028	+	1	NA	NA	NA	9	NM_023386	67775	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.025000	0.492537	
mm_37933.1	chr4	132922416	132922616	-	1	NA	NA	NA	35	NM_145553	230789	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0.160000	0.796020	
mm_64543.1	chr7	144284294	144284494	+	1	NA	NA	NA	9	NM_001081370	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.065000	0.701493	
mm_109884.1	chr12	5246755	5246955	-	1	NA	NA	NA	128827	NM_001164493	208439	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.025000	0.487562	
mm_18025.1	chr2	38619268	38619468	-	1	NA	NA	NA	24538	NM_011187	19177	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0.005000	0.477612	
mm_113171.1	chr13	24813439	24813639	+	1	NA	NA	NA	11882	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.010000	0.343284	-99(GCATTTATACAC,+,0.00)
mm_133847.1	chr16	96205750	96205950	+	1	NA	NA	NA	5380	NM_015825	50795	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0.015000	0.497512	-30(GTCTTTTAAGGG,-,0.00),-29(TCTTTTAAGGGA,+,0.00)
mm_27158.1	chr3	33138138	33138338	-	1	NA	NA	NA	4953	NM_001163516	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.000000	0.333333	
mm_55670.1	chr6	72522369	72522569	-	1	NA	NA	NA	-21922	NM_007599	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.015000	0.422886	
mm_125064.1	chr15	25940909	25941109	+	1	NA	NA	NA	183	NM_025459	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.030000	0.542289	
mm_64374.1	chr7	142442797	142442997	+	1	NA	NA	NA	429	NM_009405	21953	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	0.005000	0.532338	-77(TGCTTTATGAGG,-,0.00)
mm_11415.1	chr2	31639620	31639820	+	1	NA	NA	NA	-317	NM_001123362	381359	Mm.379512	NM_001123362	ENSMUSG00000079466	Prdm12	Gm998	PR domain containing 12	protein-coding	0.045000	0.562189	-32(TCCTATAAAAGA,-,0.00)
mm_37589.1	chr4	126468517	126468717	-	1	NA	NA	NA	-34	NM_153403	236511	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	0.135000	0.751244	
mm_167912.1	chrX	93831989	93832189	-	1	NA	NA	NA	6	NM_145630	236900	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	0.125000	0.736318	
mm_111108.1	chr12	80957993	80958193	-	1	NA	NA	NA	9986	NM_011387	20493	Mm.486361	NM_011387	ENSMUSG00000021135	Slc10a1	Ntcp	solute carrier family 10 (sodium/bile acid cotransporter family), member 1	protein-coding	0.010000	0.497512	
mm_129976.1	chr15	85821694	85821894	-	1	NA	NA	NA	-61	NM_011105	18766	Mm.89965	NM_011105	ENSMUSG00000052496	Pkdrej	-	polycystin (PKD) family receptor for egg jelly	protein-coding	0.125000	0.756219	
mm_130373.1	chr15	97823565	97823765	-	1	NA	NA	NA	8102	NM_019572	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.020000	0.497512	
mm_48744.1	chr5	147875456	147875656	-	1	NA	NA	NA	14928	NM_025624	66537	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.025000	0.522388	
mm_82361.1	chr9	14500311	14500511	-	1	NA	NA	NA	71	NM_173433	244694	Mm.240457	NM_173433	ENSMUSG00000053914	Kdm4d	4932416A15|Jmjd2d	lysine (K)-specific demethylase 4D	protein-coding	0.055000	0.517413	
mm_108835.1	chr12	95780687	95780887	+	1	NA	NA	NA	88561	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.010000	0.442786	-66(CCTTAAATAACG,+,0.00),-50(GCTCCTTAAAGG,-,0.00),-21(CCATTTATACCC,+,0.00)
mm_8527.1	chr1	154884381	154884581	-	1	NA	NA	NA	-158561	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.045000	0.552239	
mm_161179.1	chr13	43480828	43481028	-	1	NA	NA	NA	45	NM_019930	56705	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.165000	0.820896	
mm_168274.1	chr1	102628155	102628355	-	1	NA	NA	NA	1472487	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0.015000	0.477612	
mm_20899.1	chr2	149092289	149092489	-	1	NA	NA	NA	-216877	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.010000	0.432836	
mm_144426.1	chr18	21001256	21001456	+	1	NA	NA	NA	56	NM_001303005	56515	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	0.105000	0.731343	
mm_116635.1	chr13	48968658	48968858	-	1	NA	NA	NA	646	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.045000	0.567164	
mm_131011.1	chr15	103562899	103563099	-	1	NA	NA	NA	2082	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.005000	0.462687	
mm_77339.1	chr8	119563625	119563825	-	1	NA	NA	NA	-4964	NM_019709	56453	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	0.025000	0.447761	83(CGCCTTTAATGC,-,0.00),85(CCTTTAATGCCA,+,0.00)
mm_156529.1	chrX	151046823	151047023	+	1	NA	NA	NA	-247	NM_008001	14163	Mm.8142	NM_008001	ENSMUSG00000025265	Fgd1	ZFYVE3	FYVE, RhoGEF and PH domain containing 1	protein-coding	0.090000	0.701493	
mm_117301.1	chr13	67269012	67269212	-	1	NA	NA	NA	-44	NM_001001152	238690	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	0.020000	0.507463	
mm_72636.1	chr8	84689186	84689386	+	1	NA	NA	NA	39	NM_198020	212528	Mm.275720	NM_198020	ENSMUSG00000001909	Trmt1	6720406L13Rik|6720477L24|D8Ertd812e	tRNA methyltransferase 1	protein-coding	0.050000	0.572139	
mm_72373.1	chr8	81342406	81342606	+	1	NA	NA	NA	-56	NM_001024617	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.095000	0.711443	
mm_100512.1	chr11	120530427	120530627	+	1	NA	NA	NA	-200	NM_008101	14527	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.065000	0.646766	
mm_136709.1	chr17	7926006	7926206	+	1	NA	NA	NA	106	NM_145968	72536	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik	T cell activation Rho GTPase activating protein	protein-coding	0.020000	0.507463	
mm_124459.1	chr14	120422830	120423030	-	1	NA	NA	NA	-55531	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.000000	0.412935	
mm_171953.1	chr5	78128608	78128808	+	1	NA	NA	NA	663220	NR_131050	69370	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0.055000	0.626866	
mm_96856.1	chr11	70055976	70056176	+	1	NA	NA	NA	1721	NM_001291132	11889	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.040000	0.611940	
mm_117555.1	chr13	85126535	85126735	-	1	NA	NA	NA	-62750	NM_001347587	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0.010000	0.303483	
mm_115055.1	chr13	100651521	100651721	+	1	NA	NA	NA	14	NM_001015889	108143	Mm.301148	NM_027139	ENSMUSG00000052293	Taf9	2310012M09Rik|AA673500|AU045423|TAFII31|TAFII32|Taf2g	TATA-box binding protein associated factor 9	protein-coding	0.155000	0.751244	
mm_101945.1	chr11	50211953	50212153	-	1	NA	NA	NA	-1233	NM_011018	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.010000	0.447761	
mm_118964.1	chr14	27622247	27622447	+	1	NA	NA	NA	-60	NM_001347497	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	0.140000	0.800995	
mm_10671.1	chr2	20970156	20970356	+	1	NA	NA	NA	1382	NR_033225	433408	Mm.386941	NR_033225		Gm13375	OTTMUSG00000011664	predicted gene 13375	ncRNA	0.000000	0.323383	
mm_155493.1	chrX	73734470	73734670	+	1	NA	NA	NA	-16755	NM_001313698	27061	Mm.17	NM_012060	ENSMUSG00000002015	Bcap31	Bap31	B cell receptor associated protein 31	protein-coding	0.045000	0.606965	
mm_99393.1	chr11	102145387	102145587	+	1	NA	NA	NA	-26	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	0.055000	0.616915	
mm_108868.1	chr12	99514674	99514874	+	1	NA	NA	NA	-49067	NR_136760	102639404	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.015000	0.527363	
mm_162865.1	chr10	93309814	93310014	+	1	NA	NA	NA	1245	NM_001322268	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.040000	0.472637	
mm_107894.1	chr12	70649898	70650098	+	1	NA	NA	NA	-175516	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.005000	0.432836	
mm_95631.1	chr11	53631885	53632085	+	1	NA	NA	NA	2717	NM_008355	16163	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	0.010000	0.592040	
mm_12451.1	chr2	71211734	71211934	+	1	NA	NA	NA	-112	NM_001198878	13427	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0.075000	0.597015	
mm_77307.1	chr8	117671166	117671366	-	1	NA	NA	NA	249	NM_028725	74032	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	0.010000	0.457711	-35(ACCCATATAAGG,-,0.00),-33(CCATATAAGGTG,+,0.00)
mm_73383.1	chr8	105685942	105686142	+	1	NA	NA	NA	-4864	NM_001033320	234695	Mm.471640	NM_001033320	ENSMUSG00000050357	Carmil2	CG1399-PB|D130029J02Rik|Gm585|Rltpr	capping protein regulator and myosin 1 linker 2	protein-coding	0.065000	0.646766	
mm_16765.1	chr2	9878265	9878465	-	1	NA	NA	NA	235	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.020000	0.442786	
mm_34958.1	chr4	155993352	155993552	+	1	NA	NA	NA	115	NM_001302468	20318	Mm.293517	NM_011341	ENSMUSG00000029076	Sdf4	Cab45	stromal cell derived factor 4	protein-coding	0.105000	0.681592	
mm_76451.1	chr8	85087129	85087329	-	1	NA	NA	NA	3960	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.025000	0.517413	
mm_51653.1	chr6	86048259	86048459	+	1	NA	NA	NA	19678	NM_001271860	11519	Mm.104155	NM_013458	ENSMUSG00000030000	Add2	2900072M03Rik|add97	adducin 2 (beta)	protein-coding	0.010000	0.412935	
mm_103757.1	chr11	80858182	80858382	-	1	NA	NA	NA	18	NR_110449	75043	Mm.410815	NR_110449	ENSMUSG00000086703	4930507D10Rik	-	RIKEN cDNA 4930507D10 gene	ncRNA	0.015000	0.447761	18(CATTTTAGAGGC,+,0.00)
mm_112580.1	chr13	13699104	13699304	+	1	NA	NA	NA	-84855	NM_001302997	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0.000000	0.393035	
mm_131917.1	chr16	23308043	23308243	+	1	NA	NA	NA	17673	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.000000	0.477612	55(CCTTATAGAAGC,+,0.00)
mm_106585.1	chr11	120729568	120729768	-	1	NA	NA	NA	2353	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.040000	0.597015	
mm_128007.1	chr15	13132826	13133026	-	1	NA	NA	NA	40749	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.005000	0.462687	42(CCCTTTATATAC,+,0.00),44(CTTTATATACTC,+,0.00)
mm_148752.1	chr19	6057842	6058042	+	1	NA	NA	NA	-25	NM_001190436	14109	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	0.125000	0.691542	
mm_141747.1	chr17	34201345	34201545	-	1	NA	NA	NA	-3034	NM_011530	21355	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.020000	0.517413	
mm_92235.1	chr10	69212905	69213105	-	1	NA	NA	NA	93	NM_001331193	320700	Mm.396529	NM_001331193	ENSMUSG00000090622	A930033H14Rik	-	RIKEN cDNA A930033H14 gene	protein-coding	0.080000	0.626866	
mm_26142.1	chr3	138061818	138062018	+	1	NA	NA	NA	5470	NR_037975	329763	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA	0.010000	0.462687	
mm_71450.1	chr8	46521539	46521739	+	1	NA	NA	NA	-30430	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.010000	0.412935	
mm_151553.1	chr19	59458656	59458856	+	1	NA	NA	NA	66	NM_010132	13797	Mm.245394	NM_010132	ENSMUSG00000043969	Emx2	Pdo	empty spiracles homeobox 2	protein-coding	0.040000	0.467662	
mm_91346.1	chr10	26741471	26741671	-	1	NA	NA	NA	-30941	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.030000	0.477612	
mm_126431.1	chr15	80572713	80572913	+	1	NA	NA	NA	216	NM_001289442	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.035000	0.472637	
mm_62783.1	chr7	112427819	112428019	+	1	NA	NA	NA	213	NM_020606	57342	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding	0.100000	0.676617	
mm_51033.1	chr6	65590297	65590497	+	1	NA	NA	NA	-1	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.010000	0.422886	
mm_39294.1	chr5	5421621	5421821	+	1	NA	NA	NA	-41470	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.005000	0.492537	
mm_6161.1	chr1	65051049	65051249	-	1	NA	NA	NA	14	NM_007777	12968	Mm.258170	NM_007777	ENSMUSG00000070870	Cryge	Cryg-2|Cryg-6|DGcry-2|Elo	crystallin, gamma E	protein-coding	0.025000	0.601990	
mm_92962.1	chr10	85957697	85957897	-	1	NA	NA	NA	-4	NM_145422	28088	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	0.100000	0.611940	
mm_114999.1	chr13	97919759	97919959	+	1	NA	NA	NA	286306	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0.025000	0.422886	
mm_29795.1	chr3	127692447	127692647	-	1	NA	NA	NA	59402	NM_009718	11924	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	0.020000	0.447761	-19(CTGTATTAAAGA,-,0.00)
mm_155901.1	chrX	101667253	101667453	+	1	NA	NA	NA	27135	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.010000	0.422886	
mm_55852.1	chr6	83441496	83441696	-	1	NA	NA	NA	82	NM_183138	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.115000	0.766169	
mm_2495.1	chr1	106022042	106022242	+	1	NA	NA	NA	31736	NM_001122675	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.005000	0.402985	
mm_46722.1	chr5	110729791	110729991	-	1	NA	NA	NA	40826	NM_029337	75560	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	0.015000	0.427861	
mm_138721.1	chr17	36869474	36869674	+	1	NA	NA	NA	0	NM_011280	19824	Mm.299155	NM_011280	ENSMUSG00000073400	Trim10	AI324236|BB139825|Herf1|Rnf9	tripartite motif-containing 10	protein-coding	0.005000	0.537313	
mm_54530.1	chr6	36715370	36715570	-	1	NA	NA	NA	95891	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.000000	0.278607	
mm_63705.1	chr7	130646172	130646372	+	1	NA	NA	NA	-46284	NM_001347637	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.095000	0.691542	
mm_95602.1	chr11	53350960	53351160	+	1	NA	NA	NA	293	NM_033565	93736	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.135000	0.766169	
mm_36498.1	chr4	83324070	83324270	-	1	NA	NA	NA	19	NM_027238	69863	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.115000	0.706468	
mm_147438.1	chr18	46522098	46522298	-	1	NA	NA	NA	3773	NM_173423	240263	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.000000	0.273632	4(GGCCTTATAAAA,-,0.00)
mm_33729.1	chr4	134097440	134097640	+	1	NA	NA	NA	-2467	NM_013706	23833	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	0.005000	0.562189	
mm_105889.1	chr11	114933674	114933874	-	1	NA	NA	NA	612	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.010000	0.527363	
mm_37610.1	chr4	126753664	126753864	-	1	NA	NA	NA	-6	NM_133886	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.085000	0.681592	
mm_143421.1	chr17	70844946	70845146	-	1	NA	NA	NA	1731	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.015000	0.522388	
mm_129095.1	chr15	75929653	75929853	-	1	NA	NA	NA	-23	NM_031201	22122	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	0.065000	0.597015	
mm_81213.1	chr9	107581206	107581406	+	1	NA	NA	NA	10	NM_178020	109685	Mm.447916	NM_178020	ENSMUSG00000036091	Hyal3	Hyl3	hyaluronoglucosaminidase 3	protein-coding	0.015000	0.611940	
mm_24255.1	chr3	89186617	89186817	+	1	NA	NA	NA	3492	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.020000	0.492537	
mm_68919.1	chr7	126462066	126462266	-	1	NA	NA	NA	907	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.015000	0.572139	
mm_127835.1	chr15	6831766	6831966	-	1	NA	NA	NA	42447	NM_011019	18414	Mm.10760	NM_011019	ENSMUSG00000022146	Osmr	OSMRB	oncostatin M receptor	protein-coding	0.005000	0.303483	
mm_86465.1	chr10	4429195	4429395	+	1	NA	NA	NA	-129	NR_002891	433224	Mm.153111	NR_002891		Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	0.015000	0.487562	
mm_117731.1	chr13	95618327	95618527	-	1	NA	NA	NA	6	NM_010169	14062	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	0.120000	0.726368	
mm_6663.1	chr1	80277345	80277545	-	1	NA	NA	NA	63245	NM_001313728	26554	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.015000	0.378109	48(CCTTTTATGGTC,+,0.00)
mm_113015.1	chr13	21981097	21981297	+	1	NA	NA	NA	3	NM_001162929	195236	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	0.045000	0.542289	
mm_97093.1	chr11	73176390	73176590	+	1	NA	NA	NA	518	NM_001168470	66048	Mm.73608	NM_025318	ENSMUSG00000047260	Emc6	0610009E20Rik|0610025L18Rik|Tmem93	ER membrane protein complex subunit 6	protein-coding	0.050000	0.562189	
mm_30933.1	chr4	32983225	32983425	+	1	NA	NA	NA	327	NM_027491	52187	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	0.075000	0.691542	
mm_160928.1	chr11	87986255	87986455	-	1	NA	NA	NA	230	NM_001168472	68097	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	0.025000	0.467662	
mm_15578.1	chr2	158667093	158667293	+	1	NA	NA	NA	58	NM_001159662	228852	Mm.150540	NM_153089	ENSMUSG00000037754	Ppp1r16b	ANKRD4|C130078N17Rik|TIMAP|Wdt4	protein phosphatase 1, regulatory (inhibitor) subunit 16B	protein-coding	0.100000	0.706468	
mm_115776.1	chr13	19311217	19311417	-	1	NA	NA	NA	84496	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.407960	
mm_36963.1	chr4	109188959	109189159	-	1	NA	NA	NA	13213	NM_133885	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.000000	0.348259	1(TTCCTTAAAAGC,-,0.00)
mm_148163.1	chr18	77714374	77714574	-	1	NA	NA	NA	290	NR_027978	67640	Mm.482903	NM_026289		4930465K10Rik	-	RIKEN cDNA 4930465K10 gene	ncRNA	0.105000	0.676617	
mm_91392.1	chr10	30699959	30700159	-	1	NA	NA	NA	-44192	NM_001111267	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.005000	0.338308	
mm_35692.1	chr4	44084077	44084277	-	1	NA	NA	NA	0	NM_015828	50798	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	0.045000	0.577114	
mm_158588.1	chrX	150815566	150815766	-	1	NA	NA	NA	-1327	NM_030700	80884	Mm.22575	NM_030700	ENSMUSG00000025268	Maged2	4833439A22Rik|Mage-d2|ORF1	melanoma antigen, family D, 2	protein-coding	0.000000	0.427861	
mm_105620.1	chr11	106788996	106789196	-	1	NA	NA	NA	-156	NM_177088	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.090000	0.661692	
mm_45434.1	chr5	67099114	67099314	-	1	NA	NA	NA	-88	NM_008888	18935	Mm.62505	NM_008888	ENSMUSG00000012520	Phox2b	Dilp1|NBPhox|Pmx2b|Px2b	paired-like homeobox 2b	protein-coding	0.015000	0.422886	
mm_30494.1	chr3	156920668	156920868	-	1	NA	NA	NA	358974	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.015000	0.467662	
mm_74531.1	chr8	9625041	9625241	-	1	NA	NA	NA	145882	NM_173446	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding	0.005000	0.402985	
mm_154320.1	chrM	2155	2355	+	1	NA	NA	NA	NA	NA									0.020000	0.308458	
mm_115233.1	chr13	109903028	109903228	+	1	NA	NA	NA	-681	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.160000	0.771144	
mm_53143.1	chr6	125231865	125232065	+	1	NA	NA	NA	-105	NM_145391	213233	Mm.296902	NM_145391	ENSMUSG00000038213	Tapbpl	BC017613|TAPBPL-R|Tapbplr	TAP binding protein-like	protein-coding	0.015000	0.527363	
mm_54251.1	chr6	28261862	28262062	-	1	NA	NA	NA	-361	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.115000	0.731343	
mm_133775.1	chr16	94724396	94724596	+	1	NA	NA	NA	113077	NM_001347731	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.060000	0.547264	
mm_39906.1	chr5	31291135	31291335	+	1	NA	NA	NA	-121	NM_026298	67661	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	0.085000	0.552239	-33(GCCCATAAGAGG,-,0.00)
mm_74289.1	chr8	125910245	125910445	+	1	NA	NA	NA	-105	NM_145608	234878	Mm.216458	NM_145608	ENSMUSG00000031853	Map3k21	Mlk4|mKIAA1804	mitogen-activated protein kinase kinase kinase 21	protein-coding	0.040000	0.631841	
mm_154823.1	chrX	16619733	16619933	+	1	NA	NA	NA	135	NM_173740	17161	Mm.21108	NM_173740	ENSMUSG00000025037	Maoa	1110061B18Rik|AA407771	monoamine oxidase A	protein-coding	0.050000	0.532338	-31(CCTTTTAAACCC,+,0.00)
mm_28475.1	chr3	92081551	92081751	-	1	NA	NA	NA	1491	NM_008508	16939	Mm.1121	NM_008508	ENSMUSG00000043165	Lor	AI036317|S77319	loricrin	protein-coding	0.120000	0.751244	
mm_166451.1	chr5	137517369	137517569	+	1	NA	NA	NA	-1411	NM_031408	57330	Mm.268344	NM_031408	ENSMUSG00000029714	Gigyf1	Perq1|mKIAA4110	GRB10 interacting GYF protein 1	protein-coding	0.025000	0.582090	
mm_58476.1	chr7	3411394	3411594	+	1	NA	NA	NA	-3572	NR_128566	104795667		NR_128566	ENSMUSG00000094210	Gm23450	Mir935|mmu-mir-935	predicted gene, 23450	ncRNA	0.030000	0.522388	
mm_146276.1	chr18	77882372	77882572	+	1	NA	NA	NA	-55995	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.010000	0.557214	
mm_47802.1	chr5	132542281	132542481	-	1	NA	NA	NA	-38	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.045000	0.537313	
mm_122607.1	chr14	51057370	51057570	-	1	NA	NA	NA	-228	NM_001011875	497106	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	0.025000	0.537313	
mm_75550.1	chr8	57652470	57652670	-	1	NA	NA	NA	485	NM_001167981	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0.170000	0.810945	
mm_30646.1	chr4	8837731	8837931	+	1	NA	NA	NA	147425	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.025000	0.582090	
mm_21281.1	chr2	156953258	156953458	-	1	NA	NA	NA	38753	NM_013865	29812	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0.015000	0.492537	
mm_154162.1	chr19	58670497	58670697	-	1	NA	NA	NA	232	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.015000	0.522388	
mm_106792.1	chr12	4782045	4782245	+	1	NA	NA	NA	12850	NM_028376	382562	Mm.251575	NM_028376	ENSMUSG00000020639	Pfn4	2900024P18Rik	profilin family, member 4	protein-coding	0.020000	0.507463	
mm_20373.1	chr2	128429148	128429348	-	1	NA	NA	NA	103	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.010000	0.412935	
mm_56506.1	chr6	99339308	99339508	-	1	NA	NA	NA	-72893	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.030000	0.527363	
mm_1233.1	chr1	62777976	62778176	+	1	NA	NA	NA	16656	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.015000	0.562189	
mm_86318.1	chr9	122950812	122951012	-	1	NA	NA	NA	88	NM_025419	66202	Mm.268307	NM_025419	ENSMUSG00000032551	1110059G10Rik	-	RIKEN cDNA 1110059G10 gene	protein-coding	0.070000	0.572139	
mm_106540.1	chr11	120578859	120579059	-	1	NA	NA	NA	2661	NM_133796	192662	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.010000	0.606965	
mm_126293.1	chr15	79347507	79347707	+	1	NA	NA	NA	87	NM_010755	17133	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.105000	0.631841	
mm_121634.1	chr14	8368028	8368228	-	1	NA	NA	NA	10635	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.000000	0.567164	73(GGGCTTAAAAGA,-,0.00)
mm_96240.1	chr11	62551698	62551898	+	1	NA	NA	NA	67	NM_001313984	22187	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.105000	0.597015	
mm_84781.1	chr9	76323473	76323673	-	1	NA	NA	NA	5	NM_198962	387285	Mm.335300	NM_198962	ENSMUSG00000032360	Hcrtr2	OX2R|mOX2aR|mOX2bR|mOXR2	hypocretin (orexin) receptor 2	protein-coding	0.070000	0.631841	
mm_148574.1	chr19	4869307	4869507	+	1	NA	NA	NA	8502	NM_013456	11474	Mm.5316	NM_013456	ENSMUSG00000006457	Actn3	-	actinin alpha 3	protein-coding	0.010000	0.507463	
mm_111602.1	chr12	102356764	102356964	-	1	NA	NA	NA	73223	NM_001161365	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.005000	0.477612	
mm_15843.1	chr2	164769798	164769998	+	1	NA	NA	NA	-31	NM_026785	68612	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	0.075000	0.631841	
mm_115276.1	chr13	111686225	111686425	+	1	NA	NA	NA	147	NM_172593	218613	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0.145000	0.771144	
mm_101.1	chr1	9545338	9545538	+	1	NA	NA	NA	30	NM_021511	59014	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	0.100000	0.646766	
mm_123420.1	chr14	64416944	64417144	-	1	NA	NA	NA	-88	NM_001253716	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.025000	0.482587	
mm_130358.1	chr15	97767592	97767792	-	1	NA	NA	NA	-26	NM_001177811	223864	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.065000	0.686567	
mm_158135.1	chrX	103186441	103186641	-	1	NA	NA	NA	123	NM_008671	17954	Mm.388694	NM_008671	ENSMUSG00000082229	Nap1l2	Bpx	nucleosome assembly protein 1-like 2	protein-coding	0.040000	0.616915	
mm_1514.1	chr1	72583197	72583397	+	1	NA	NA	NA	46	NM_018817	54380	Mm.274232	NM_018817	ENSMUSG00000039354	Smarcal1	6030401P21Rik|AI851716|Mharp	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	protein-coding	0.050000	0.517413	
mm_111408.1	chr12	91265958	91266158	-	1	NA	NA	NA	118351	NM_181815	75216	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0.000000	0.318408	
mm_146947.1	chr18	32462409	32462609	-	1	NA	NA	NA	-84225	NR_045403	402767	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.025000	0.537313	
mm_5767.1	chr1	49400693	49400893	-	1	NA	NA	NA	-1526730	NM_019790	56363	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	0.005000	0.383085	
mm_168149.1	chr10	37707678	37707878	-	1	NA	NA	NA	-467996	NR_131035	75877	Mm.402094	NR_131035	ENSMUSG00000111234	4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA	0.050000	0.631841	
mm_29511.1	chr3	116422130	116422330	-	1	NA	NA	NA	1802	NM_001080818	229776	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.010000	0.507463	
mm_160173.1	chr7	45361594	45361794	-	1	NA	NA	NA	-4469	NR_015480	50994	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0.135000	0.711443	
mm_119189.1	chr14	32342040	32342240	+	1	NA	NA	NA	20121	NM_001081130	239017	Mm.318302	NM_001081130	ENSMUSG00000021913	Ogdhl	-	oxoglutarate dehydrogenase-like	protein-coding	0.040000	0.621891	
mm_53854.1	chr6	149189597	149189797	+	1	NA	NA	NA	-985	NM_001113424	232566	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0.025000	0.457711	-34(ATGTATAAAAGG,-,0.00)
mm_55300.1	chr6	54816853	54817053	-	1	NA	NA	NA	37	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.200000	0.800995	
mm_39509.1	chr5	21246694	21246894	+	1	NA	NA	NA	60527	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.005000	0.467662	
mm_81137.1	chr9	106626506	106626706	+	1	NA	NA	NA	24	NM_001101628	100041096	Mm.477435	NM_001101628	ENSMUSG00000091129	Iqcf6	-	IQ motif containing F6	protein-coding	0.010000	0.482587	
mm_58046.1	chr6	136827957	136828157	-	1	NA	NA	NA	159	NM_021714	60321	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	0.110000	0.701493	
mm_50002.1	chr6	41055778	41055978	+	1	NA	NA	NA	-20369	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.427861	
mm_92410.1	chr10	76721874	76722074	-	1	NA	NA	NA	4070	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.025000	0.587065	
mm_131897.1	chr16	23237306	23237506	+	1	NA	NA	NA	11385	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.030000	0.517413	
mm_85588.1	chr9	107313229	107313429	-	1	NA	NA	NA	16670	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.010000	0.502488	
mm_56882.1	chr6	119030769	119030969	-	1	NA	NA	NA	77626	NM_001159534	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.015000	0.402985	-34(ACTTTTATACAC,+,0.00)
mm_17958.1	chr2	37373364	37373564	-	1	NA	NA	NA	-14132	NM_026176	67466	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	0.005000	0.328358	
mm_168337.1	chr11	11906157	11906357	+	1	NA	NA	NA	-8113	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.000000	0.482587	-31(GCTTTAATACCC,+,0.00)
mm_157937.1	chrX	85080308	85080508	-	1	NA	NA	NA	32113	NM_001314034	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.010000	0.422886	
mm_109808.1	chr12	3356871	3357071	-	1	NA	NA	NA	-8161	NM_008445	16570	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.035000	0.597015	
mm_67076.1	chr7	68264117	68264317	-	1	NA	NA	NA	16	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.080000	0.626866	
mm_3576.1	chr1	151086196	151086396	+	1	NA	NA	NA	-51738	NR_038011	402734	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.025000	0.427861	-33(GGGTATAAAGAG,-,0.00)
mm_42025.1	chr5	108279037	108279237	+	1	NA	NA	NA	10240	NM_026106	13486	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0.000000	0.293532	-26(TCTTTTAAGGTG,+,0.00),-15(GAGTATATATGC,-,0.00)
mm_61606.1	chr7	80029819	80030019	+	1	NA	NA	NA	3691	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.005000	0.452736	
mm_600.1	chr1	39852355	39852555	+	1	NA	NA	NA	-5125	NR_040465	73426	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	0.010000	0.482587	-96(CTCTATAAAATG,-,0.00)
mm_172816.1	chr9	123690153	123690353	-	1	NA	NA	NA	-11421	NM_139142	102680	Mm.440867	NM_139142	ENSMUSG00000036814	Slc6a20a	A730081N20Rik|AU022428|Xt3s1|Xtrp3s1	solute carrier family 6 (neurotransmitter transporter), member 20A	protein-coding	0.045000	0.457711	
mm_106798.1	chr12	4917238	4917438	+	1	NA	NA	NA	-15	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.115000	0.691542	
mm_147829.1	chr18	62179867	62180067	-	1	NA	NA	NA	14	NM_007420	11555	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.070000	0.651741	
mm_47851.1	chr5	134549860	134550060	-	1	NA	NA	NA	2474	NM_001039162	269713	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.000000	0.502488	
mm_85262.1	chr9	99420152	99420352	-	1	NA	NA	NA	16460	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.015000	0.472637	
mm_168411.1	chr1	131573722	131573922	+	1	NA	NA	NA	-25292	NM_011924	26361	Mm.89986	NM_011924	ENSMUSG00000026432	Avpr1b	AVPR3|V3/V1b|VIBR|VPR3	arginine vasopressin receptor 1B	protein-coding	0.040000	0.542289	
mm_18150.1	chr2	45067068	45067268	-	1	NA	NA	NA	43109	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.015000	0.502488	
mm_46601.1	chr5	107868081	107868281	-	1	NA	NA	NA	6926	NM_007964	14020	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0.015000	0.333333	
mm_46311.1	chr5	100571998	100572198	-	1	NA	NA	NA	107	NM_139198	231507	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.020000	0.373134	
mm_117201.1	chr13	64066033	64066233	-	1	NA	NA	NA	23068	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.005000	0.472637	
mm_81490.1	chr9	110003717	110003917	+	1	NA	NA	NA	-48204	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.010000	0.562189	
mm_59851.1	chr7	29908433	29908633	+	1	NA	NA	NA	16	NM_001243908	73729	Mm.333743	NM_001243908	ENSMUSG00000099689	Zfp383	1110003H10Rik	zinc finger protein 383	protein-coding	0.080000	0.597015	
mm_146538.1	chr18	5593283	5593483	-	1	NA	NA	NA	-946	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	0.065000	0.577114	57(CCTTATATAGCC,+,0.00)
mm_143137.1	chr17	57218416	57218616	-	1	NA	NA	NA	-1288	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.030000	0.527363	
mm_155756.1	chrX	96167457	96167657	+	1	NA	NA	NA	71512	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.000000	0.442786	
mm_57389.1	chr6	124839892	124840092	-	1	NA	NA	NA	283	NM_013530	14695	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0.025000	0.651741	
mm_150014.1	chr19	29367096	29367296	+	1	NA	NA	NA	-242	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.035000	0.432836	
mm_33481.1	chr4	130818812	130819012	+	1	NA	NA	NA	26375	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.040000	0.651741	
mm_129323.1	chr15	77767550	77767750	-	1	NA	NA	NA	-12421	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.040000	0.592040	
mm_119847.1	chr14	54440649	54440849	+	1	NA	NA	NA	9151	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.020000	0.611940	
mm_30833.1	chr4	21931606	21931806	+	1	NA	NA	NA	380	NM_175234	76132	Mm.159689	NM_175234	ENSMUSG00000028246	Faxc	6230409E13Rik|AW742931	failed axon connections homolog	protein-coding	0.050000	0.592040	-33(CCTTTTATGGGG,+,0.00)
mm_12194.1	chr2	65620868	65621068	+	1	NA	NA	NA	199	NM_001346679	110876	Mm.220329	NM_001099298	ENSMUSG00000075318	Scn2a	6430408L10|A230052E19Rik|Nav1.2|Scn2a1	sodium channel, voltage-gated, type II, alpha	protein-coding	0.020000	0.378109	
mm_150704.1	chr19	42306381	42306581	+	1	NA	NA	NA	-26311	NR_037246	100526549		NR_037246	ENSMUSG00000093234	Mir3085	mir-3085|mmu-mir-3085	microRNA 3085	ncRNA	0.020000	0.562189	
mm_30158.1	chr3	142881938	142882138	-	1	NA	NA	NA	-34	NM_178654	109333	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	0.135000	0.786070	
mm_25695.1	chr3	122266464	122266664	+	1	NA	NA	NA	-7850	NM_153806	99480	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	0.045000	0.432836	-90(GTGTTTAAAAAA,-,0.00)
mm_21991.1	chr2	167643477	167643677	-	1	NA	NA	NA	-11572	NM_023230	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.010000	0.611940	
mm_142221.1	chr17	37185430	37185630	-	1	NA	NA	NA	-8362	NM_023137	24108	Mm.140210	NM_023137	ENSMUSG00000035186	Ubd	FAT10	ubiquitin D	protein-coding	0.015000	0.492537	
mm_4259.1	chr1	171418976	171419176	+	1	NA	NA	NA	43	NM_001164525	226654	Mm.46366	NM_001164525	ENSMUSG00000103711	Tstd1	AV065366|EG226654|Gm4848|KAT	thiosulfate sulfurtransferase (rhodanese)-like domain containing 1	protein-coding	0.035000	0.592040	
mm_116420.1	chr13	41800575	41800775	-	1	NA	NA	NA	46813	NM_175417	109254	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.005000	0.437811	
mm_17320.1	chr2	26463660	26463860	-	1	NA	NA	NA	6359	NR_105962	102465602		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.035000	0.572139	
mm_118382.1	chr13	117025744	117025944	-	1	NA	NA	NA	-328	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.140000	0.756219	-32(TACTATTAAAGC,-,0.00)
mm_163389.1	chr12	56529395	56529595	-	1	NA	NA	NA	-75	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.050000	0.626866	
mm_122277.1	chr14	34417190	34417390	-	1	NA	NA	NA	41786	NM_153127	105450	Mm.272673	NM_153127	ENSMUSG00000041445	Mmrn2	AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1	multimerin 2	protein-coding	0.010000	0.363184	
mm_141941.1	chr17	35051181	35051381	-	1	NA	NA	NA	1038	NM_033444	114584	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.010000	0.537313	
mm_119967.1	chr14	55490999	55491199	+	1	NA	NA	NA	6	NM_001024645	268747	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	0.130000	0.761194	
mm_150044.1	chr19	29379014	29379214	+	1	NA	NA	NA	11676	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.015000	0.487562	
mm_89908.1	chr10	111167103	111167303	+	1	NA	NA	NA	2401	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.010000	0.298507	-47(TGTTTTTAAAGG,-,0.00),-46(GTTTTTAAAGGA,+,0.00)
mm_28800.1	chr3	96198372	96198572	-	1	NA	NA	NA	-886	NM_026975	69168	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	0.010000	0.507463	
mm_64642.1	chr7	4008262	4008462	-	1	NA	NA	NA	54842	NM_001302677	52855	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.005000	0.318408	
mm_21002.1	chr2	152343868	152344068	-	1	NA	NA	NA	92	NM_175093	228775	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	0.095000	0.671642	
mm_119288.1	chr14	34501853	34502053	+	1	NA	NA	NA	593	NM_009758	12166	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK3|AU045487|BMPR-IA|Bmpr	bone morphogenetic protein receptor, type 1A	protein-coding	0.065000	0.557214	
mm_143012.1	chr17	56461747	56461947	-	1	NA	NA	NA	374	NM_001252456	19280	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.090000	0.686567	
mm_156049.1	chrX	109095306	109095506	+	1	NA	NA	NA	-1	NM_019989	56726	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	0.030000	0.532338	
mm_137117.1	chr17	22497300	22497500	+	1	NA	NA	NA	73198	NM_001331198	74149	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	0.015000	0.492537	
mm_55033.1	chr6	48976511	48976711	-	1	NA	NA	NA	1468	NM_001029987	243376	Mm.244112	NM_001029987	ENSMUSG00000068536	Doxl2	-	diamine oxidase-like protein 2	protein-coding	0.020000	0.497512	
mm_117040.1	chr13	58291609	58291809	-	1	NA	NA	NA	-17521	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.010000	0.412935	
mm_19572.1	chr2	101641173	101641373	-	1	NA	NA	NA	8259	NM_009019	19373	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0.005000	0.353234	
mm_49695.1	chr6	33941202	33941402	+	1	NA	NA	NA	-88146	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.000000	0.333333	
mm_51664.1	chr6	86195351	86195551	+	1	NA	NA	NA	224	NM_031199	21802	Mm.137222	NM_031199	ENSMUSG00000029999	Tgfa	wa-1|wa1	transforming growth factor alpha	protein-coding	0.155000	0.761194	
mm_28218.1	chr3	88410268	88410468	-	1	NA	NA	NA	29	NM_001310605	67037	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0.070000	0.636816	
mm_137352.1	chr17	25228081	25228281	+	1	NA	NA	NA	5599	NM_028789	74154	Mm.267353	NM_028789	ENSMUSG00000015127	Unkl	1300004G08Rik	unkempt family like zinc finger	protein-coding	0.020000	0.477612	
mm_140655.1	chr17	12740493	12740693	-	1	NA	NA	NA	-718	NR_002853	104103	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.005000	0.557214	
mm_132892.1	chr16	48842749	48842949	+	1	NA	NA	NA	297	NM_020509	57262	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0.005000	0.477612	
mm_78481.1	chr9	32695950	32696150	+	1	NA	NA	NA	8	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.140000	0.786070	
mm_139256.1	chr17	47737037	47737237	+	1	NA	NA	NA	100	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.160000	0.781095	
mm_123757.1	chr14	70203361	70203561	-	1	NA	NA	NA	1162	NM_001271408	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.015000	0.587065	
mm_142057.1	chr17	35667390	35667590	-	1	NA	NA	NA	102	NM_175137	68915	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	0.095000	0.666667	
mm_126051.1	chr15	76948653	76948853	+	1	NA	NA	NA	209	NM_054099	117171	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0.080000	0.606965	
mm_103627.1	chr11	78751584	78751784	-	1	NA	NA	NA	45	NM_197989	69109	Mm.341420	NM_197989	ENSMUSG00000049489	Fam58b	1810009O10Rik|Fam58a	family with sequence similarity 58, member B	protein-coding	0.150000	0.781095	
mm_33662.1	chr4	133174373	133174573	+	1	NA	NA	NA	-21182	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.010000	0.432836	
mm_52558.1	chr6	116173532	116173732	+	1	NA	NA	NA	19742	NM_177412	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.065000	0.497512	
mm_39295.1	chr5	5479083	5479283	+	1	NA	NA	NA	-40	NM_001200025	381716	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding	0.020000	0.477612	
mm_748.1	chr1	43544796	43544996	+	1	NA	NA	NA	99145	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.015000	0.497512	
mm_118505.1	chr14	13961172	13961372	+	1	NA	NA	NA	41	NM_001285780	66231	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.175000	0.756219	
mm_51439.1	chr6	80018974	80019174	+	1	NA	NA	NA	197	NM_001134743	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.015000	0.472637	-6(GCTTTTAAACTG,+,0.00)
mm_156906.1	chrX	169037575	169037775	+	1	NA	NA	NA	1064	NR_109847	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.010000	0.363184	
mm_35127.1	chr4	11209176	11209376	-	1	NA	NA	NA	17567	NM_001282943	12448	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	0.010000	0.338308	
mm_31342.1	chr4	46489215	46489415	+	1	NA	NA	NA	-14	NM_053179	94181	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.125000	0.731343	
mm_13355.1	chr2	103411665	103411865	+	1	NA	NA	NA	-333	NM_001145813	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.025000	0.572139	
mm_19480.1	chr2	93014519	93014719	-	1	NA	NA	NA	-14729	NR_110333	433456	Mm.235231	NM_001002794	ENSMUSG00000075027	4631405J19Rik	-	RIKEN cDNA 4631405J19 gene	ncRNA	0.060000	0.716418	
mm_98683.1	chr11	96286968	96287168	+	1	NA	NA	NA	422	NM_010460	15415	Mm.390366	NM_010460	ENSMUSG00000038721	Hoxb7	AI325018|Hox-2.3	homeobox B7	protein-coding	0.100000	0.656716	
mm_132874.1	chr16	48629820	48630020	+	1	NA	NA	NA	142036	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.015000	0.452736	
mm_107827.1	chr12	69184065	69184265	+	1	NA	NA	NA	7	NM_146035	217664	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	0.145000	0.741294	
mm_73384.1	chr8	105686087	105686287	+	1	NA	NA	NA	-4719	NM_001033320	234695	Mm.471640	NM_001033320	ENSMUSG00000050357	Carmil2	CG1399-PB|D130029J02Rik|Gm585|Rltpr	capping protein regulator and myosin 1 linker 2	protein-coding	0.075000	0.711443	
mm_138258.1	chr17	34590774	34590974	+	1	NA	NA	NA	1068	NM_134116	106512	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.025000	0.611940	
mm_172498.1	chr7	65784715	65784915	+	1	NA	NA	NA	-19237	NR_045301	100503969	Mm.383527	NR_045301		1810008I18Rik	-	RIKEN cDNA 1810008I18 gene	ncRNA	0.015000	0.442786	
mm_148474.1	chr19	4097705	4097905	+	1	NA	NA	NA	454	NM_026373	52004	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0.050000	0.577114	
mm_54729.1	chr6	40585723	40585923	-	1	NA	NA	NA	-18	NM_001038604	23845	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	0.010000	0.482587	
mm_162357.1	chr1	58586535	58586735	+	1	NA	NA	NA	238	NM_025597	66495	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	0.050000	0.482587	
mm_78436.1	chr9	32036830	32037030	+	1	NA	NA	NA	-79206	NM_001195632	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.000000	0.323383	
mm_50895.1	chr6	56868748	56868948	+	1	NA	NA	NA	33038	NM_001252374	107569	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0.025000	0.512438	
mm_41121.1	chr5	87781745	87781945	+	1	NA	NA	NA	7395	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.010000	0.447761	
mm_28707.1	chr3	95624636	95624836	-	1	NA	NA	NA	-244	NM_019561	56205	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.020000	0.492537	
mm_81643.1	chr9	110907638	110907838	+	1	NA	NA	NA	9123	NM_001195437	235634	Mm.31788	NM_001195437	ENSMUSG00000096393	Gm590	-	predicted gene 590	protein-coding	0.010000	0.457711	
mm_68235.1	chr7	104842483	104842683	-	1	NA	NA	NA	-79	NM_201409	381944	Mm.334094	NM_201409	ENSMUSG00000062369	Usp17lb	DUB-1A|Dub1a|USP17-B	ubiquitin specific peptidase 17-like B	protein-coding	0.005000	0.477612	-34(AAGTATAAAAGG,-,0.00)
mm_78344.1	chr9	25297779	25297979	+	1	NA	NA	NA	45440	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.005000	0.363184	
mm_129039.1	chr15	75048726	75048926	-	1	NA	NA	NA	11	NM_001252057	17067	Mm.1583	NM_010741	ENSMUSG00000079018	Ly6c1	AA682074|AA959465|Ly-6C|Ly-6C1|Ly6c	lymphocyte antigen 6 complex, locus C1	protein-coding	0.000000	0.507463	
mm_131951.1	chr16	24418196	24418396	+	1	NA	NA	NA	-24641	NR_037954	68841	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	0.015000	0.567164	
mm_65672.1	chr7	28294540	28294740	-	1	NA	NA	NA	-3506	NM_175033	280621	Mm.212777	NM_175033	ENSMUSG00000046750	Selenov	Selv	selenoprotein V	protein-coding	0.150000	0.746269	
mm_31943.1	chr4	86658521	86658721	+	1	NA	NA	NA	11438	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.030000	0.487562	
mm_26130.1	chr3	137867997	137868197	+	1	NA	NA	NA	422	NM_001033155	70604	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	0.115000	0.776119	
mm_87543.1	chr10	53596829	53597029	+	1	NA	NA	NA	-32	NM_025541	66403	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0.080000	0.621891	
mm_35904.1	chr4	49597776	49597976	-	1	NA	NA	NA	-6	NM_025944	67063	Mm.490285	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	0.050000	0.651741	
mm_35955.1	chr4	53130761	53130961	-	1	NA	NA	NA	29034	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.000000	0.412935	
mm_168855.1	chr12	24252377	24252577	-	1	NA	NA	NA	-155208	NM_001256489	66808	Mm.379124	NM_001256489	ENSMUSG00000073158	9030624G23Rik	-	RIKEN cDNA 9030624G23 gene	protein-coding	0.130000	0.781095	
mm_144399.1	chr18	20749895	20750095	+	1	NA	NA	NA	-3591	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.020000	0.477612	
mm_82577.1	chr9	21131170	21131370	-	1	NA	NA	NA	5	NM_018793	54721	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.080000	0.611940	
mm_118928.1	chr14	27038932	27039132	+	1	NA	NA	NA	31	NM_134437	171463	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	0.100000	0.706468	
mm_74566.1	chr8	11008825	11009025	-	1	NA	NA	NA	-495	NM_001081212	384783	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.110000	0.676617	
mm_140674.1	chr17	12960634	12960834	-	1	NA	NA	NA	-9	NM_009338	110460	Mm.439711	NM_009338	ENSMUSG00000023832	Acat2	AW742799|Tcp-1x|Tcp1-rs1	acetyl-Coenzyme A acetyltransferase 2	protein-coding	0.045000	0.601990	
mm_100359.1	chr11	118475731	118475931	+	1	NA	NA	NA	-1129	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.015000	0.532338	-75(CCTCATAAAGCT,+,0.00)
mm_65879.1	chr7	29555543	29555743	-	1	NA	NA	NA	-50183	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.020000	0.497512	20(GCTTAAAGGCGC,+,0.00)
mm_56076.1	chr6	87182559	87182759	-	1	NA	NA	NA	77913	NM_001167937	52372	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0.010000	0.492537	-34(GTCCAGAAAAGC,-,0.00)
mm_111023.1	chr12	79089574	79089774	-	1	NA	NA	NA	-4	NM_029988	110417	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	0.095000	0.656716	
mm_155008.1	chrX	41400805	41401005	+	1	NA	NA	NA	-396	NM_016886	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding	0.030000	0.407960	
mm_68214.1	chr7	104409434	104409634	-	1	NA	NA	NA	-50888	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.000000	0.393035	
mm_111569.1	chr12	101818383	101818583	-	1	NA	NA	NA	636	NM_011812	23876	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	0.035000	0.452736	
mm_135947.1	chr16	74411625	74411825	-	1	NA	NA	NA	-813	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.070000	0.686567	
mm_83117.1	chr9	40392328	40392528	-	1	NA	NA	NA	58956	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.025000	0.587065	
mm_83555.1	chr9	46242587	46242787	-	1	NA	NA	NA	1843	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.050000	0.577114	
mm_99055.1	chr11	99051707	99051907	+	1	NA	NA	NA	10547	NM_010517	16010	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.020000	0.467662	
mm_155352.1	chrX	68761781	68761981	+	1	NA	NA	NA	42	NM_001166619	207854	Mm.284945	NM_174993	ENSMUSG00000062170	Fmr1nb	3830422N12Rik|NY-SAR-35|NYSAR35	fragile X mental retardation 1 neighbor	protein-coding	0.040000	0.522388	
mm_171917.1	chr5	5782334	5782534	-	1	NA	NA	NA	-33117	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.010000	0.472637	
mm_28268.1	chr3	88752747	88752947	-	1	NA	NA	NA	19752	NM_018804	229521	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0.005000	0.388060	
mm_156523.1	chrX	150594248	150594448	+	1	NA	NA	NA	4427	NM_008824	18639	Mm.249131	NM_008824	ENSMUSG00000025271	Pfkfb1	PFK/FBPase 1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	protein-coding	0.005000	0.497512	
mm_109848.1	chr12	4593702	4593902	-	1	NA	NA	NA	794	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.050000	0.497512	-87(CCTTAAATAAGC,+,0.00),-38(CTATATATACCC,+,0.00)
mm_119916.1	chr14	54953298	54953498	+	1	NA	NA	NA	-4256	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.030000	0.537313	
mm_123239.1	chr14	60177493	60177693	-	1	NA	NA	NA	51322	NR_030458	751526		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA	0.170000	0.810945	
mm_43936.1	chr5	145114162	145114362	+	1	NA	NA	NA	6	NM_023142	11867	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.135000	0.781095	
mm_90806.1	chr10	7664024	7664224	-	1	NA	NA	NA	-516	NM_001347228	18537	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	0.015000	0.427861	
mm_126881.1	chr15	89453713	89453913	+	1	NA	NA	NA	-98	NM_021921	60597	Mm.173337	NM_021921	ENSMUSG00000022619	Mapk8ip2	3230402N03Rik|AI847694|AW049958|IB2|Jip2|R75148	mitogen-activated protein kinase 8 interacting protein 2	protein-coding	0.075000	0.641791	
mm_26612.1	chr3	152346398	152346598	+	1	NA	NA	NA	20	NM_001076676	170822	Mm.258320	NM_133247	ENSMUSG00000025437	Usp33	9830169D19Rik|AA409780|Vdu1	ubiquitin specific peptidase 33	protein-coding	0.140000	0.756219	
mm_160297.1	chr7	132802428	132802628	-	1	NA	NA	NA	10668	NM_212473	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.010000	0.557214	
mm_82161.1	chr9	123781364	123781564	+	1	NA	NA	NA	14253	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.000000	0.393035	
mm_32425.1	chr4	107126929	107127129	+	1	NA	NA	NA	30138	NM_172873	242603	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	0.025000	0.507463	
mm_109436.1	chr12	110695809	110696009	+	1	NA	NA	NA	486	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.135000	0.701493	
mm_27093.1	chr3	30140320	30140520	-	1	NA	NA	NA	-127216	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.010000	0.427861	
mm_128161.1	chr15	33687720	33687920	-	1	NA	NA	NA	63	NM_001085421	239364	Mm.60794	NM_001085421	ENSMUSG00000038984	Tspyl5	6330530B20|E130308C19Rik	testis-specific protein, Y-encoded-like 5	protein-coding	0.075000	0.646766	
mm_32620.1	chr4	114406589	114406789	+	1	NA	NA	NA	-35	NM_001085549	666048	Mm.331779	NM_001085549	ENSMUSG00000070867	Trabd2b	Gm12824|Hkat|OTTMUSG00000008561	TraB domain containing 2B	protein-coding	0.055000	0.726368	
mm_164882.1	chr18	59062225	59062425	+	1	NA	NA	NA	-56	NR_033764	225583	Mm.209711	NM_173759	ENSMUSG00000050875	A730017C20Rik	-	RIKEN cDNA A730017C20 gene	protein-coding	0.025000	0.487562	
mm_100310.1	chr11	117977904	117978104	+	1	NA	NA	NA	-8638	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.000000	0.572139	
mm_151313.1	chr19	55832781	55832981	+	1	NA	NA	NA	-62440	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.015000	0.447761	
mm_138904.1	chr17	43576672	43576872	+	1	NA	NA	NA	8321	NM_013737	27226	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.005000	0.363184	
mm_139209.1	chr17	47726741	47726941	+	1	NA	NA	NA	-1	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.045000	0.621891	-33(GTGTATAAAAGG,-,0.00)
mm_122066.1	chr14	30469805	30470005	-	1	NA	NA	NA	-9660	NM_133761	75901	Mm.28733	NM_133761	ENSMUSG00000021962	Dcp1a	1110066A22Rik|4930568L04Rik|AU019772|D14Ertd817e|Mitc1|SMIF	decapping mRNA 1A	protein-coding	0.025000	0.437811	
mm_50759.1	chr6	53573244	53573444	+	1	NA	NA	NA	-30	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.015000	0.507463	
mm_44778.1	chr5	32122429	32122629	-	1	NA	NA	NA	-13943	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.010000	0.497512	60(GTCCCTTAAAGG,-,0.00),62(CCCTTAAAGGAC,+,0.00)
mm_61660.1	chr7	80766203	80766403	+	1	NA	NA	NA	37028	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.005000	0.502488	
mm_15878.1	chr2	164837111	164837311	+	1	NA	NA	NA	3438	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.025000	0.507463	
mm_67803.1	chr7	98111357	98111557	-	1	NA	NA	NA	-2209	NM_001256083	17921	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.080000	0.691542	
mm_134379.1	chr16	17153683	17153883	-	1	NA	NA	NA	-6554	NM_001306169	76872	Mm.101656	NM_029779	ENSMUSG00000022768	Ccdc116	4930432J16Rik	coiled-coil domain containing 116	protein-coding	0.015000	0.492537	
mm_16004.1	chr2	167358877	167359077	+	1	NA	NA	NA	-9799	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.035000	0.512438	
mm_65598.1	chr7	27355614	27355814	-	1	NA	NA	NA	294	NM_138676	192192	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	0.020000	0.507463	
mm_51547.1	chr6	83237555	83237755	+	1	NA	NA	NA	280	NM_001166067	232156	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	0.015000	0.582090	
mm_162359.1	chr1	61638818	61639018	+	1	NA	NA	NA	94	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0.140000	0.776119	
mm_95507.1	chr11	51967579	51967779	+	1	NA	NA	NA	48	NM_029976	52626	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.140000	0.736318	
mm_10484.1	chr2	14763052	14763252	+	1	NA	NA	NA	42510	NR_028497	625342	Mm.484784	NR_028497		Gm13315	OTTMUSG00000011384	lactate dehydrogenase A pseudogene	pseudo	0.010000	0.447761	69(CCTTATAAACAA,+,0.00)
mm_22280.1	chr2	179976599	179976799	-	1	NA	NA	NA	-53	NM_001081092	228980	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	0.160000	0.796020	
mm_123783.1	chr14	70331399	70331599	-	1	NA	NA	NA	16934	NM_001135152	213053	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0.015000	0.512438	
mm_48916.1	chr6	4003976	4004176	+	1	NA	NA	NA	89	NM_025331	66066	Mm.25547	NM_025331	ENSMUSG00000032766	Gng11	0610037B21Rik	guanine nucleotide binding protein (G protein), gamma 11	protein-coding	0.030000	0.651741	
mm_97902.1	chr11	83418869	83419069	+	1	NA	NA	NA	8897	NM_001013386	276952	Mm.66275	NM_001013386	ENSMUSG00000020684	Rasl10b	B230331P10Rik|Gm729|VTS58635	RAS-like, family 10, member B	protein-coding	0.035000	0.691542	
mm_127987.1	chr15	12549203	12549403	-	1	NA	NA	NA	43253	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.035000	0.547264	
mm_135142.1	chr16	35854925	35855125	-	1	NA	NA	NA	16357	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.005000	0.432836	
mm_34881.1	chr4	155582434	155582634	+	1	NA	NA	NA	18719	NM_001159637	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.000000	0.572139	
mm_90914.1	chr10	12445184	12445384	-	1	NA	NA	NA	416451	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.005000	0.383085	
mm_74489.1	chr8	4779380	4779580	-	1	NA	NA	NA	54	NM_011369	20419	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	0.080000	0.557214	
mm_58205.1	chr6	143757170	143757370	-	1	NA	NA	NA	-105982	NR_045732	73425	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA	0.005000	0.452736	
mm_78305.1	chr9	22643180	22643380	+	1	NA	NA	NA	167565	NM_178415	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.015000	0.572139	
mm_168936.1	chr12	69158992	69159192	-	1	NA	NA	NA	94	NM_009093	20090	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0.090000	0.572139	
mm_124592.1	chr15	3274722	3274922	+	1	NA	NA	NA	3845	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.010000	0.462687	63(TCTTTTAAGGCT,+,0.00)
mm_70716.1	chr8	15086021	15086221	+	1	NA	NA	NA	28468	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.020000	0.442786	
mm_135944.1	chr16	74411348	74411548	-	1	NA	NA	NA	-536	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.040000	0.537313	
mm_160094.1	chr7	17150231	17150431	+	1	NA	NA	NA	-69	NM_054059	384557	Mm.486145	NM_054059	ENSMUSG00000053228	Ceacam3	EG384557|Psg24|cea12	carcinoembryonic antigen-related cell adhesion molecule 3	protein-coding	0.000000	0.562189	
mm_137934.1	chr17	32658915	32659115	+	1	NA	NA	NA	-468	NM_001101588	631304	Mm.328950	NM_001101588	ENSMUSG00000090700	Cyp4f40	EG631304	cytochrome P450, family 4, subfamily f, polypeptide 40	protein-coding	0.005000	0.527363	
mm_164595.1	chr17	27534844	27535044	+	1	NA	NA	NA	-21630	NM_001166536	15361	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0.040000	0.611940	
mm_9081.1	chr1	168431604	168431804	-	1	NA	NA	NA	465	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.010000	0.487562	
mm_46655.1	chr5	108670545	108670745	-	1	NA	NA	NA	4151	NM_001310692	231583	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0.000000	0.457711	
mm_76777.1	chr8	96403765	96403965	-	1	NA	NA	NA	142108	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.010000	0.467662	
mm_129839.1	chr15	83154385	83154585	-	1	NA	NA	NA	4840	NR_004432	104307	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.020000	0.626866	
mm_161124.1	chr12	111039589	111039789	+	1	NA	NA	NA	-109	NM_198023	217864	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0.165000	0.815920	
mm_136860.1	chr17	12810453	12810653	+	1	NA	NA	NA	-40847	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.030000	0.527363	
mm_8044.1	chr1	135283981	135284181	-	1	NA	NA	NA	3	NM_145417	215615	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	0.085000	0.696517	
mm_68424.1	chr7	109759245	109759445	-	1	NA	NA	NA	-7082	NM_020050	56786	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	0.000000	0.333333	-41(TGCTTTTTAAGC,-,0.00)
mm_58552.1	chr7	4740056	4740256	+	1	NA	NA	NA	29	NM_001115018	232811	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	0.110000	0.666667	
mm_42667.1	chr5	119671061	119671261	+	1	NA	NA	NA	-72	NM_011535	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.055000	0.447761	
mm_29690.1	chr3	123105184	123105384	-	1	NA	NA	NA	-70297	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.010000	0.437811	
mm_144706.1	chr18	34864256	34864456	+	1	NA	NA	NA	3149	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.010000	0.417910	
mm_72775.1	chr8	86387939	86388139	+	1	NA	NA	NA	178551	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	0.005000	0.517413	
mm_41575.1	chr5	93172704	93172904	+	1	NA	NA	NA	33691	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.010000	0.452736	
mm_123137.1	chr14	56575372	56575572	-	1	NA	NA	NA	-147	NM_001145978	328417	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	0.030000	0.492537	-95(GCCCCTTAGAGG,-,0.00)
mm_27335.1	chr3	50401378	50401578	-	1	NA	NA	NA	42135	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.368159	
mm_158442.1	chrX	140505761	140505961	-	1	NA	NA	NA	36807	NR_122039	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.025000	0.572139	
mm_127096.1	chr15	97789145	97789345	+	1	NA	NA	NA	4880	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.010000	0.601990	
mm_169658.1	chr15	58134711	58134911	-	1	NA	NA	NA	271	NM_027435	70472	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0.105000	0.696517	
mm_149461.1	chr19	11519843	11520043	+	1	NA	NA	NA	1384	NM_027209	69774	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	0.000000	0.393035	
mm_28684.1	chr3	95402678	95402878	-	1	NA	NA	NA	63	NR_015490	67654	Mm.75066	NR_015490	ENSMUSG00000105734	4930558C23Rik	-	RIKEN cDNA 4930558C23 gene	ncRNA	0.015000	0.422886	
mm_123661.1	chr14	69244173	69244373	-	1	NA	NA	NA	40830	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.005000	0.328358	
mm_80356.1	chr9	75193204	75193404	+	1	NA	NA	NA	-38710	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.000000	0.298507	
mm_72480.1	chr8	83608462	83608662	+	1	NA	NA	NA	14	NM_001308227	81489	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.140000	0.676617	
mm_159751.1	chr5	86289176	86289376	-	1	NA	NA	NA	32	NM_001030297	435845	Mm.359654	NM_001030297	ENSMUSG00000061184	Tmprss11c	Tmprss13	transmembrane protease, serine 11c	protein-coding	0.010000	0.482587	
mm_7815.1	chr1	131910759	131910959	-	1	NA	NA	NA	401	NM_001145804	98415	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.155000	0.776119	
mm_38806.1	chr4	148159952	148160152	-	1	NA	NA	NA	42	NM_173401	230903	Mm.220327	NM_173401	ENSMUSG00000029001	Fbxo44	5730411K09|AV001623|FBG3|FBX30|Fbx6a|Fbxo6a	F-box protein 44	protein-coding	0.055000	0.621891	
mm_94001.1	chr10	127594475	127594675	-	1	NA	NA	NA	26573	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.035000	0.537313	
mm_149746.1	chr19	22448145	22448345	+	1	NA	NA	NA	37	NM_177341	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.020000	0.537313	
mm_81069.1	chr9	106203040	106203240	+	1	NA	NA	NA	32	NM_011876	23999	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	0.150000	0.776119	
mm_14711.1	chr2	143546080	143546280	+	1	NA	NA	NA	47	NM_008792	18549	Mm.294493	NM_008792	ENSMUSG00000027419	Pcsk2	6330411F23Rik|AI839700|Nec-2|Nec2|PC2|Phpp-2|SPC2	proprotein convertase subtilisin/kexin type 2	protein-coding	0.080000	0.646766	
mm_152753.1	chr19	20123771	20123971	-	1	NA	NA	NA	266800	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.005000	0.398010	
mm_105352.1	chr11	103017073	103017273	-	1	NA	NA	NA	-26	NM_026551	68087	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	0.110000	0.711443	
mm_131133.1	chr16	6042267	6042467	+	1	NA	NA	NA	66780	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA	0.000000	0.348259	
mm_56470.1	chr6	99028100	99028300	-	1	NA	NA	NA	98	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.145000	0.766169	
mm_16413.1	chr2	180070494	180070694	+	1	NA	NA	NA	1	NM_001083329	52856	Mm.219658	NM_028422	ENSMUSG00000039069	Mtg2	1810011P19Rik|2900056P18Rik|D2Bwg0647e|Gtpbp5	mitochondrial ribosome associated GTPase 2	protein-coding	0.125000	0.716418	
mm_77910.1	chr9	7349659	7349859	+	1	NA	NA	NA	2385	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.383085	
mm_6600.1	chr1	75317221	75317421	-	1	NA	NA	NA	-304	NM_016878	13437	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	0.110000	0.681592	
mm_165585.1	chr3	31813108	31813308	+	1	NA	NA	NA	-89495	NM_028231	72413	Mm.64790	NM_028231	ENSMUSG00000037610	Kcnmb2	2700049B16Rik|3110031N04Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 2	protein-coding	0.005000	0.417910	
mm_140759.1	chr17	17599664	17599864	-	1	NA	NA	NA	24725	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.005000	0.308458	
mm_67824.1	chr7	98282298	98282498	-	1	NA	NA	NA	27129	NM_025408	66190	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca	alkaline ceramidase 3	protein-coding	0.000000	0.248756	
mm_125128.1	chr15	30184653	30184853	+	1	NA	NA	NA	12160	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.015000	0.487562	
mm_21695.1	chr2	164478284	164478484	-	1	NA	NA	NA	-4660	NM_001271575	73603	Mm.472883	NM_001271575	ENSMUSG00000017720	Trp53tg5	1700126L10Rik	transformation related protein 53 target 5	protein-coding	0.015000	0.477612	
mm_140711.1	chr17	14943033	14943233	-	1	NA	NA	NA	-9	NM_175173	71682	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	0.085000	0.616915	
mm_52515.1	chr6	115399149	115399349	+	1	NA	NA	NA	-22817	NM_011146	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.000000	0.298507	
mm_170258.1	chr18	14570007	14570207	+	1	NA	NA	NA	112807	NM_001161369	268996	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	0.055000	0.497512	
mm_147391.1	chr18	44174969	44175169	-	1	NA	NA	NA	4	NM_183123	77424	Mm.99224	NM_183123	ENSMUSG00000053729	Spinkl	9530002K18Rik	serine protease inhibitor, Kazal type-like	protein-coding	0.005000	0.378109	-53(ACATTTATAAGG,-,0.00)
mm_93098.1	chr10	89741125	89741325	-	1	NA	NA	NA	-3766	NM_029166	75089	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0.015000	0.398010	
mm_96192.1	chr11	61975991	61976191	+	1	NA	NA	NA	19328	NM_001310526	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.005000	0.542289	-36(GGGCTTTAAAGC,-,0.00),-34(GCTTTAAAGCCC,+,0.00)
mm_160898.1	chr11	73984696	73984896	-	1	NA	NA	NA	-190	NM_146710	258705	Mm.377645	NM_146710	ENSMUSG00000049041	Olfr398	MOR157-1	olfactory receptor 398	protein-coding	0.005000	0.358209	
mm_123049.1	chr14	55603886	55604086	-	1	NA	NA	NA	1	NM_001159417	16391	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0.025000	0.552239	
mm_42461.1	chr5	115436872	115437072	+	1	NA	NA	NA	7287	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.030000	0.686567	-11(GCCTATTAAGGA,-,0.00)
mm_56817.1	chr6	116716627	116716827	-	1	NA	NA	NA	31	NM_178768	319776	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.010000	0.597015	
mm_48894.1	chr5	151645478	151645678	-	1	NA	NA	NA	5630	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	0.025000	0.497512	
mm_12273.1	chr2	68991282	68991482	+	1	NA	NA	NA	129941	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.000000	0.402985	
mm_74570.1	chr8	11183601	11183801	-	1	NA	NA	NA	-129104	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.020000	0.517413	-36(CTCCATAAATAG,-,0.00),-34(CCATAAATAGGC,+,0.00)
mm_52569.1	chr6	116337785	116337985	+	1	NA	NA	NA	-137	NM_001302385	71779	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	0.090000	0.616915	
mm_34361.1	chr4	144892666	144892866	+	1	NA	NA	NA	-61	NM_001172424	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.080000	0.621891	
mm_6882.1	chr1	84669319	84669519	-	1	NA	NA	NA	-26420	NR_039588	100628595		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0.000000	0.368159	-97(ACCCATTAAGGG,-,0.00),11(CCATTTAGAGAG,+,0.00)
mm_15419.1	chr2	156840873	156841073	+	1	NA	NA	NA	966	NM_173396	228839	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0.095000	0.711443	
mm_66095.1	chr7	30973805	30974005	-	1	NA	NA	NA	101	NR_038860	76415	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.045000	0.567164	
mm_65915.1	chr7	30195123	30195323	-	1	NA	NA	NA	-175	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.055000	0.517413	
mm_1460.1	chr1	67233324	67233524	+	1	NA	NA	NA	110397	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.010000	0.373134	59(TTTTTTATAAGG,-,0.00),61(TTTTATAAGGCC,+,0.00)
mm_147359.1	chr18	43392994	43393194	-	1	NA	NA	NA	283	NM_009468	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.100000	0.701493	
mm_133959.1	chr16	4086033	4086233	-	1	NA	NA	NA	-8323	NM_026508	68015	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0.015000	0.547264	
mm_59068.1	chr7	19488989	19489189	+	1	NA	NA	NA	19242	NM_177692	232946	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.035000	0.597015	
mm_68614.1	chr7	116443351	116443551	-	1	NA	NA	NA	7	NM_011083	18704	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	protein-coding	0.105000	0.681592	
mm_106165.1	chr11	116653979	116654179	-	1	NA	NA	NA	234	NM_030206	114886	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0.100000	0.641791	
mm_16429.1	chr2	180389021	180389221	+	1	NA	NA	NA	73	NR_029528	387136		NR_029528	ENSMUSG00000070144	Mir1a-1	Mir1-1|Mirn1-1|Mirn1b|Mirn1c|Mirn1d|mir-1a-1|mmu-mir-1-1|mmu-mir-1a-1	microRNA 1a-1	ncRNA	0.025000	0.537313	-56(CTTTATATGCCC,+,0.00)
mm_154894.1	chrX	20870121	20870321	+	1	NA	NA	NA	55	NM_001294280	21857	Mm.8245	NM_011593	ENSMUSG00000001131	Timp1	Clgi|EPA|TIMP-1|TPA-S1|Timp	tissue inhibitor of metalloproteinase 1	protein-coding	0.045000	0.597015	
mm_80799.1	chr9	96258718	96258918	+	1	NA	NA	NA	113	NM_001184709	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.015000	0.407960	
mm_79068.1	chr9	46234325	46234525	+	1	NA	NA	NA	874	NM_001289833	11814	Mm.390161	NM_023114	ENSMUSG00000032081	Apoc3	apo-CIII|apoC-III	apolipoprotein C-III	protein-coding	0.020000	0.567164	
mm_143097.1	chr17	57080843	57081043	-	1	NA	NA	NA	-2433	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.040000	0.552239	
mm_166058.1	chr4	133172591	133172791	+	1	NA	NA	NA	-22964	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.015000	0.557214	
mm_28026.1	chr3	83046631	83046831	-	1	NA	NA	NA	3132	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.035000	0.567164	
mm_7202.1	chr1	93022996	93023196	-	1	NA	NA	NA	16762	NM_001159658	208760	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0.050000	0.601990	
mm_6769.1	chr1	84130819	84131019	-	1	NA	NA	NA	88042	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.353234	
mm_55077.1	chr6	49210185	49210385	-	1	NA	NA	NA	4669	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.005000	0.437811	
mm_145906.1	chr18	65801356	65801556	+	1	NA	NA	NA	878	NM_025468	66286	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0.030000	0.527363	
mm_5928.1	chr1	55236941	55237141	-	1	NA	NA	NA	-136	NM_175439	212679	Mm.19223	NM_175439	ENSMUSG00000046994	Mars2	C730026E21Rik|MetRS	methionine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.080000	0.611940	
mm_166806.1	chr7	5741925	5742125	-	1	NA	NA	NA	61606	NM_001167568	100039499	Mm.160382	NM_001167568	ENSMUSG00000096244	Vmn1r187	-	vomeronasal 1 receptor Vmn1r187	protein-coding	0.005000	0.427861	-63(TTCCTTATAAGC,-,0.00),-61(CCTTATAAGCAC,+,0.00)
mm_105597.1	chr11	106750379	106750579	-	1	NA	NA	NA	-747	NM_001271375	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.010000	0.437811	-34(TTCTTTATAAAC,-,0.00)
mm_56830.1	chr6	117174333	117174533	-	1	NA	NA	NA	5898	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.005000	0.407960	
mm_45926.1	chr5	89443471	89443671	-	1	NA	NA	NA	14327	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.015000	0.512438	
mm_93450.1	chr10	110000808	110001008	-	1	NA	NA	NA	-689	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.000000	0.383085	
mm_69035.1	chr7	126798500	126798700	-	1	NA	NA	NA	578	NM_001177307	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.040000	0.512438	
mm_154105.1	chr19	57118711	57118911	-	1	NA	NA	NA	213	NM_001347459	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.010000	0.567164	
mm_16542.1	chr2	181680208	181680408	+	1	NA	NA	NA	-2	NM_009326	21400	Mm.24245	NM_009326	ENSMUSG00000059540	Tcea2	AI326274|S-II-T1|SII-T1|Tceat	transcription elongation factor A (SII), 2	protein-coding	0.130000	0.661692	
mm_132233.1	chr16	32750238	32750438	+	1	NA	NA	NA	14452	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.010000	0.457711	
mm_119533.1	chr14	47667216	47667416	+	1	NA	NA	NA	3560	NM_001347522	16709	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	0.005000	0.368159	
mm_73747.1	chr8	114439624	114439824	+	1	NA	NA	NA	72	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.105000	0.661692	
mm_51253.1	chr6	71908940	71909140	+	1	NA	NA	NA	-13	NM_009088	20019	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0.060000	0.512438	-99(GCTTTTAAACTG,+,0.00)
mm_112019.1	chr12	111377612	111377812	-	1	NA	NA	NA	6	NM_183016	217866	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0.160000	0.781095	
mm_172008.1	chr6	109505211	109505411	-	1	NA	NA	NA	676670	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.060000	0.517413	37(AACTTTAAATGG,-,0.00)
mm_125000.1	chr15	23474356	23474556	+	1	NA	NA	NA	437993	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding	0.010000	0.383085	
mm_87535.1	chr10	53488174	53488374	+	1	NA	NA	NA	30715	NR_037973	100502868	Mm.297722	NR_037973		Gm20597	B230314j19	predicted gene, 20597	ncRNA	0.000000	0.487562	
mm_137539.1	chr17	27556584	27556784	+	1	NA	NA	NA	31	NM_001166477	111241	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1-rs1	ENSMUSG00000041059|Hmgi-rs1	high mobility group AT-hook I, related sequence 1	protein-coding	0.080000	0.587065	-65(CTCTTTTTAAGC,-,0.00),-63(CTTTTTAAGCTC,+,0.00)
mm_3850.1	chr1	160792119	160792319	+	1	NA	NA	NA	719	NM_013862	29809	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0.065000	0.577114	
mm_2546.1	chr1	107528938	107529138	+	1	NA	NA	NA	35	NM_198028	241197	Mm.123919	NM_198028	ENSMUSG00000092572	Serpinb10	9830131G07|BB233602|Serpinb10-ps	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10	protein-coding	0.000000	0.333333	
mm_52345.1	chr6	110940338	110940538	+	1	NA	NA	NA	294840	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.005000	0.353234	
mm_44380.1	chr5	17821336	17821536	-	1	NA	NA	NA	14460	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.402985	
mm_39848.1	chr5	30913329	30913529	+	1	NA	NA	NA	-357	NM_133918	100952	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	0.010000	0.621891	
mm_107620.1	chr12	51377452	51377652	+	1	NA	NA	NA	39	NM_029825	76983	Mm.216511	NM_029825	ENSMUSG00000020952	Scfd1	3110021P21Rik|RA410|STXBP1L2	Sec1 family domain containing 1	protein-coding	0.080000	0.671642	
mm_8799.1	chr1	161794482	161794682	-	1	NA	NA	NA	-6087	NM_010177	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.015000	0.442786	
mm_8329.1	chr1	149961165	149961365	-	1	NA	NA	NA	25	NM_008869	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.020000	0.517413	
mm_98269.1	chr11	88999361	88999561	+	1	NA	NA	NA	58	NM_009546	217069	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.090000	0.636816	
mm_64159.1	chr7	141356048	141356248	+	1	NA	NA	NA	8962	NR_033532	320871	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0.020000	0.616915	
mm_164876.1	chr18	58009006	58009206	-	1	NA	NA	NA	130428	NM_009194	20496	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0.005000	0.278607	-40(TTTTTTAAACCC,+,0.00)
mm_87229.1	chr10	40570260	40570460	+	1	NA	NA	NA	-2	NM_027572	70840	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.050000	0.666667	
mm_37961.1	chr4	133352792	133352992	-	1	NA	NA	NA	-13577	NM_199306	230796	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	0.030000	0.512438	
mm_12557.1	chr2	72475898	72476098	+	1	NA	NA	NA	-221	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.055000	0.517413	
mm_89787.1	chr10	102158889	102159089	+	1	NA	NA	NA	-90	NM_001162369	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.030000	0.477612	
mm_61366.1	chr7	69579608	69579808	+	1	NA	NA	NA	83614	NR_045940	73796	Mm.410832	NR_045940	ENSMUSG00000108885	4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA	0.030000	0.557214	
mm_76763.1	chr8	95740628	95740828	-	1	NA	NA	NA	12486	NR_106041	102465650		NR_106041	ENSMUSG00000106145	Mir7073	mmu-mir-7073	microRNA 7073	ncRNA	0.025000	0.542289	
mm_17905.1	chr2	35315135	35315335	-	1	NA	NA	NA	21774	NM_013515	13830	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.015000	0.532338	
mm_2661.1	chr1	125677582	125677782	+	1	NA	NA	NA	686	NM_027677	71111	Mm.32727	NM_027677	ENSMUSG00000026343	Gpr39	4933415E13Rik	G protein-coupled receptor 39	protein-coding	0.025000	0.517413	
mm_14467.1	chr2	131280259	131280459	+	1	NA	NA	NA	-7693	NR_029755	723825		NR_029755	ENSMUSG00000065563	Mir103-2	Mirn103-2|mir-103-2	microRNA 103-2	ncRNA	0.005000	0.348259	
mm_105518.1	chr11	106272745	106272945	-	1	NA	NA	NA	127	NM_001130187	83796	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	0.105000	0.631841	
mm_122103.1	chr14	30917262	30917462	-	1	NA	NA	NA	6225	NM_008407	16426	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	0.035000	0.502488	
mm_134446.1	chr16	18289091	18289291	-	1	NA	NA	NA	-23	NM_033324	94223	Mm.447352	NM_033324	ENSMUSG00000022718	Dgcr8	D16H22S1742E|D16H22S788E|D16Wis2|Gy1|N41|Vo59c07|mir-1306	DiGeorge syndrome critical region gene 8	protein-coding	0.150000	0.761194	
mm_159271.1	chr2	164171019	164171219	-	1	NA	NA	NA	-6	NM_008435	16538	Mm.6217	NM_008435	ENSMUSG00000040164	Kcns1	Kv9.1	K+ voltage-gated channel, subfamily S, 1	protein-coding	0.100000	0.706468	
mm_134940.1	chr16	31178942	31179142	-	1	NA	NA	NA	22196	NM_030138	78618	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.000000	0.343284	
mm_61204.1	chr7	64153764	64153964	+	1	NA	NA	NA	29	NM_001039104	17364	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.010000	0.507463	
mm_50923.1	chr6	57608035	57608235	+	1	NA	NA	NA	27143	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.005000	0.482587	
mm_141901.1	chr17	34951813	34952013	-	1	NA	NA	NA	555	NR_027943	68763	Mm.28895	NR_015536	ENSMUSG00000092203	1110038B12Rik	0610009C20Rik|0910001G04Rik	RIKEN cDNA 1110038B12 gene	ncRNA	0.030000	0.512438	
mm_29451.1	chr3	113194994	113195194	-	1	NA	NA	NA	-38367	NM_001190403	545562	Mm.462977	NM_001190403		Amy2b	Amy-X|Amy2-2|OTTMUSG00000022462|mAmy2-1	amylase 2b	protein-coding	0.005000	0.393035	
mm_16174.1	chr2	172550664	172550864	+	1	NA	NA	NA	-227	NM_001159696	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding	0.040000	0.557214	
mm_68457.1	chr7	110122832	110123032	-	1	NA	NA	NA	873	NM_009516	22390	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.110000	0.681592	-37(TTTTTTAAAGGC,+,0.00),-36(TTTTTAAAGGCC,+,0.00)
mm_62893.1	chr7	116031903	116032103	+	1	NA	NA	NA	-956	NM_001025560	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.105000	0.701493	
mm_97151.1	chr11	75461576	75461776	+	1	NA	NA	NA	137	NR_030711	100042498	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0.080000	0.651741	
mm_158874.1	chrY	1286489	1286689	-	1	NA	NA	NA	24	NM_012008	26900	Mm.302938	NM_012008	ENSMUSG00000069045	Ddx3y	8030469F12Rik|D1Pas1-rs1|Dby	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	protein-coding	0.090000	0.507463	
mm_3469.1	chr1	150104394	150104594	+	1	NA	NA	NA	4463	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.015000	0.487562	
mm_88509.1	chr10	77978546	77978746	+	1	NA	NA	NA	-4	NM_026431	67884	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0.110000	0.721393	
mm_152074.1	chr19	6840517	6840717	-	1	NA	NA	NA	10	NM_019924	56613	Mm.20914	NM_019924	ENSMUSG00000024952	Rps6ka4	1110069D02Rik|90kDa|AI848992|Msk2|mMSK2	ribosomal protein S6 kinase, polypeptide 4	protein-coding	0.140000	0.791045	
mm_99928.1	chr11	110996991	110997191	+	1	NA	NA	NA	-396	NM_001252209	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.015000	0.492537	
mm_126106.1	chr15	78247842	78248042	+	1	NA	NA	NA	3131	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.005000	0.616915	
mm_71046.1	chr8	33674273	33674473	+	1	NA	NA	NA	21135	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.020000	0.467662	
mm_141705.1	chr17	33999697	33999897	-	1	NA	NA	NA	536	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.085000	0.641791	
mm_54489.1	chr6	35325981	35326181	-	1	NA	NA	NA	60	NM_173375	208164	Mm.257766	NM_173375	ENSMUSG00000047420	Fam180a	B230314O19	family with sequence similarity 180, member A	protein-coding	0.010000	0.532338	49(CCTTATAGACAA,+,0.00)
mm_60429.1	chr7	44476670	44476870	+	1	NA	NA	NA	6423	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.432836	
mm_150845.1	chr19	44988833	44989033	+	1	NA	NA	NA	-411	NM_011976	26456	Mm.34404	NM_011976	ENSMUSG00000025207	Sema4g	AI507908|AW554132	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	protein-coding	0.035000	0.537313	
mm_140532.1	chr17	6754631	6754831	-	1	NA	NA	NA	28049	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.050000	0.552239	
mm_139887.1	chr17	70834646	70834846	+	1	NA	NA	NA	12031	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.055000	0.597015	
mm_148554.1	chr19	4712046	4712246	+	1	NA	NA	NA	923	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	0.185000	0.820896	
mm_2652.1	chr1	125676790	125676990	+	1	NA	NA	NA	-106	NM_027677	71111	Mm.32727	NM_027677	ENSMUSG00000026343	Gpr39	4933415E13Rik	G protein-coupled receptor 39	protein-coding	0.015000	0.582090	
mm_152142.1	chr19	7165945	7166145	-	1	NA	NA	NA	40239	NM_134150	107260	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	0.175000	0.845771	
mm_25466.1	chr3	108592336	108592536	+	1	NA	NA	NA	1158	NM_181400	99512	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	0.015000	0.422886	
mm_29022.1	chr3	101924414	101924614	-	1	NA	NA	NA	-61	NM_001039371	242126	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	0.115000	0.686567	
mm_28772.1	chr3	95928729	95928929	-	1	NA	NA	NA	-428	NM_001253758	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.060000	0.532338	-34(TGGTCTTAAAGC,-,0.00)
mm_34944.1	chr4	155891759	155891959	+	1	NA	NA	NA	-16	NM_207223	140500	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	0.110000	0.656716	
mm_153133.1	chr19	34243252	34243452	-	1	NA	NA	NA	12021	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.010000	0.517413	
mm_94537.1	chr11	9125029	9125229	+	1	NA	NA	NA	6622	NM_001159402	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.015000	0.542289	
mm_161460.1	chr15	77410980	77411180	-	1	NA	NA	NA	0	NM_001162883	223672	Mm.243758	NM_173786	ENSMUSG00000057346	Apol9a	-	apolipoprotein L 9a	protein-coding	0.015000	0.542289	
mm_34496.1	chr4	148593824	148594024	+	1	NA	NA	NA	2411	NM_009272	20810	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	0.025000	0.572139	
mm_131935.1	chr16	23613060	23613260	+	1	NA	NA	NA	3241	NM_023386	67775	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.015000	0.437811	
mm_5486.1	chr1	36891564	36891764	-	1	NA	NA	NA	47863	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.015000	0.492537	
mm_27425.1	chr3	51518702	51518902	-	1	NA	NA	NA	34836	NM_016858	19338	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.015000	0.567164	
mm_151057.1	chr19	47179046	47179246	+	1	NA	NA	NA	326	NM_021360	18011	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.170000	0.825871	
mm_160256.1	chr7	108256058	108256258	-	1	NA	NA	NA	-22	NM_146732	258727	Mm.377660	NM_146732	ENSMUSG00000096465	Olfr488	MOR204-15	olfactory receptor 488	protein-coding	0.000000	0.373134	
mm_114529.1	chr13	73536696	73536896	+	1	NA	NA	NA	49	NM_010020	13162	Mm.41993	NM_010020	ENSMUSG00000021609	Slc6a3	DAT|Dat1	solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	protein-coding	0.075000	0.641791	
mm_9049.1	chr1	167284991	167285191	-	1	NA	NA	NA	36	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.105000	0.751244	
mm_26549.1	chr3	146325181	146325381	+	1	NA	NA	NA	53663	NR_033542	100038607	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	ENSMUSG00000074175	predicted gene 10636	ncRNA	0.025000	0.621891	
mm_59675.1	chr7	28383015	28383215	+	1	NA	NA	NA	-3887	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.040000	0.582090	
mm_97333.1	chr11	77235379	77235579	+	1	NA	NA	NA	19054	NM_177710	237860	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot homolog 2 (Drosophila)	protein-coding	0.000000	0.273632	
mm_152621.1	chr19	12463745	12463945	-	1	NA	NA	NA	3066	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.005000	0.487562	
mm_68651.1	chr7	118491839	118492039	-	1	NA	NA	NA	36	NM_001033380	319622	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	0.075000	0.716418	
mm_171930.1	chr5	63518089	63518289	-	1	NA	NA	NA	-130914	NM_177006	319807	Mm.319487	NM_028470	ENSMUSG00000090061	Nwd2	3110047P20Rik|B830017A01Rik|Hn1-ps2|mKIAA1239	NACHT and WD repeat domain containing 2	protein-coding	0.015000	0.497512	-31(TCCTTTATAAAG,-,0.00),-29(CTTTATAAAGCA,+,0.00)
mm_45774.1	chr5	87091938	87092138	-	1	NA	NA	NA	517	NM_001029867	231396	Mm.439851	NM_001029867	ENSMUSG00000070704	Ugt2b36	-	UDP glucuronosyltransferase 2 family, polypeptide B36	protein-coding	0.005000	0.442786	
mm_101781.1	chr11	45852523	45852723	-	1	NA	NA	NA	659	NM_001045520	216705	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.020000	0.522388	
mm_117393.1	chr13	73677916	73678116	-	1	NA	NA	NA	7	NM_001168646	22598	Mm.30370	NM_011730	ENSMUSG00000021612	Slc6a18	B0AT3|D630001K16Rik|Xt2|Xtrp2	solute carrier family 6 (neurotransmitter transporter), member 18	protein-coding	0.000000	0.517413	
mm_37819.1	chr4	131838200	131838400	-	1	NA	NA	NA	-22	NM_001083119	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	0.155000	0.776119	
mm_75876.1	chr8	70764913	70765113	-	1	NA	NA	NA	1650	NM_023065	65972	Mm.30241	NM_023065	ENSMUSG00000031838	Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	0.030000	0.562189	
mm_10930.1	chr2	25461111	25461311	+	1	NA	NA	NA	-117	NM_153557	227622	Mm.261780	NM_153557	ENSMUSG00000047617	BC029214	D930050G13Rik|Paxx	cDNA sequence BC029214	protein-coding	0.045000	0.547264	
mm_143704.1	chr17	80577676	80577876	-	1	NA	NA	NA	-13942	NM_001033443	381113	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.065000	0.467662	
mm_12859.1	chr2	83762485	83762685	+	1	NA	NA	NA	38188	NM_008402	16410	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.010000	0.278607	
mm_54158.1	chr6	23085068	23085268	-	1	NA	NA	NA	47818	NM_013930	30956	Mm.18651	NM_013930	ENSMUSG00000029695	Aass	LKR|LKR/SDH|LOR|LOR/SDH|Lorsdh|SDH	aminoadipate-semialdehyde synthase	protein-coding	0.010000	0.527363	
mm_86845.1	chr10	21571651	21571851	+	1	NA	NA	NA	-21394	NR_027968	67692	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.020000	0.547264	
mm_10872.1	chr2	25224957	25225157	+	1	NA	NA	NA	-355	NM_146116	227613	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	0.085000	0.631841	
mm_27884.1	chr3	79173199	79173399	-	1	NA	NA	NA	-27424	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.035000	0.497512	
mm_53234.1	chr6	127446746	127446946	+	1	NA	NA	NA	6	NM_001346513	101187	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.015000	0.442786	
mm_127573.1	chr15	102279463	102279663	+	1	NA	NA	NA	107	NM_134100	106073	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0.130000	0.776119	
mm_84448.1	chr9	66512371	66512571	-	1	NA	NA	NA	2122	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.025000	0.572139	
mm_41808.1	chr5	103754471	103754671	+	1	NA	NA	NA	-2	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.050000	0.507463	
mm_23769.1	chr3	75557416	75557616	+	1	NA	NA	NA	-17	NM_009250	20713	Mm.41560	NM_009250	ENSMUSG00000027834	Serpini1	AI837402|Ns|PI-12|PI12|Spi17	serine (or cysteine) peptidase inhibitor, clade I, member 1	protein-coding	0.050000	0.616915	
mm_8722.1	chr1	160046870	160047070	-	1	NA	NA	NA	2590	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.010000	0.482587	
mm_71098.1	chr8	35216430	35216630	+	1	NA	NA	NA	-159211	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.000000	0.452736	-33(CTCCATATAAGC,-,0.00)
mm_34369.1	chr4	144893088	144893288	+	1	NA	NA	NA	51	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.035000	0.477612	
mm_47715.1	chr5	130000768	130000968	-	1	NA	NA	NA	1960	NM_010368	110006	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.035000	0.527363	
mm_112441.1	chr13	5841620	5841820	+	1	NA	NA	NA	16372	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.025000	0.472637	
mm_76180.1	chr8	82401700	82401900	-	1	NA	NA	NA	786	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.010000	0.447761	
mm_36903.1	chr4	107889685	107889885	-	1	NA	NA	NA	-41	NM_001347160	74098	Mm.274853	NM_028754	ENSMUSG00000028608	0610037L13Rik	1110008H16Rik	RIKEN cDNA 0610037L13 gene	protein-coding	0.110000	0.616915	
mm_109558.1	chr12	111791042	111791242	+	1	NA	NA	NA	22737	NM_028875	74335	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	0.005000	0.442786	
mm_71869.1	chr8	69157689	69157889	+	1	NA	NA	NA	-16836	NM_199364	211134	Mm.409446	NM_199364	ENSMUSG00000036306	Lzts1	F37|FEZ1|PSD-Zip70	leucine zipper, putative tumor suppressor 1	protein-coding	0.045000	0.487562	-41(GCTTAAAAACTC,+,0.00)
mm_108233.1	chr12	77239035	77239235	+	1	NA	NA	NA	396	NR_045554	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.120000	0.711443	
mm_64124.1	chr7	141132342	141132542	+	1	NA	NA	NA	1156	NM_013782	27388	Mm.293591	NM_013782	ENSMUSG00000025495	Ptdss2	AI481134|AI988017|PSS2	phosphatidylserine synthase 2	protein-coding	0.005000	0.477612	
mm_84887.1	chr9	79759753	79759953	-	1	NA	NA	NA	0	NM_009945	12866	Mm.152627	NM_009945	ENSMUSG00000032330	Cox7a2	COX7AL|Cox7a3|CoxVIIa-L	cytochrome c oxidase subunit VIIa 2	protein-coding	0.110000	0.656716	
mm_63383.1	chr7	127213098	127213298	+	1	NA	NA	NA	1590	NM_016754	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.015000	0.507463	
mm_87031.1	chr10	28668296	28668496	+	1	NA	NA	NA	36	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.010000	0.517413	
mm_23209.1	chr3	41563330	41563530	+	1	NA	NA	NA	47	NM_172303	269424	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.130000	0.771144	
mm_48959.1	chr6	4540838	4541038	+	1	NA	NA	NA	35320	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.005000	0.378109	
mm_171004.1	chr2	79332225	79332425	-	1	NA	NA	NA	76899	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.000000	0.457711	
mm_171966.1	chr5	86997340	86997540	-	1	NA	NA	NA	-3420	NM_172881	243085	Mm.312095	NM_172881	ENSMUSG00000035811	Ugt2b35	C730031G17	UDP glucuronosyltransferase 2 family, polypeptide B35	protein-coding	0.005000	0.452736	
mm_86485.1	chr10	4981426	4981626	+	1	NA	NA	NA	87537	NM_022027	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.000000	0.462687	
mm_84130.1	chr9	59036140	59036340	-	1	NA	NA	NA	201	NM_008684	18007	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0.155000	0.796020	
mm_102004.1	chr11	51601192	51601392	-	1	NA	NA	NA	5589	NM_001048061	15384	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.045000	0.487562	-27(ACTTTTATGGCC,+,0.00)
mm_22604.1	chr3	14506196	14506396	+	1	NA	NA	NA	25597	NM_080852	140918	Mm.215250	NM_080852	ENSMUSG00000039710	Slc7a12	Asc-2|XAT1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 12	protein-coding	0.015000	0.373134	
mm_111217.1	chr12	84436392	84436592	-	1	NA	NA	NA	11825	NM_001313967	104776	Mm.247510	NM_134042	ENSMUSG00000021238	Aldh6a1	1110038I05Rik|Mmsdh	aldehyde dehydrogenase family 6, subfamily A1	protein-coding	0.015000	0.472637	
mm_30820.1	chr4	21865794	21865994	+	1	NA	NA	NA	-13781	NM_172687	230027	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	0.010000	0.462687	
mm_139389.1	chr17	52217562	52217762	+	1	NA	NA	NA	334935	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.000000	0.467662	
mm_54609.1	chr6	38345832	38346032	-	1	NA	NA	NA	8671	NM_028864	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.025000	0.522388	77(GTGCCTTAAAGG,-,0.00),78(TGCCTTAAAGGC,-,0.00)
mm_172812.1	chr9	123689470	123689670	-	1	NA	NA	NA	-10738	NM_139142	102680	Mm.440867	NM_139142	ENSMUSG00000036814	Slc6a20a	A730081N20Rik|AU022428|Xt3s1|Xtrp3s1	solute carrier family 6 (neurotransmitter transporter), member 20A	protein-coding	0.035000	0.542289	
mm_5059.1	chr1	194986503	194986703	+	1	NA	NA	NA	-9644	NR_033564	320400	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.005000	0.308458	
mm_80827.1	chr9	96800530	96800730	+	1	NA	NA	NA	35068	NR_102296	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	0.005000	0.472637	
mm_38218.1	chr4	135972496	135972696	-	1	NA	NA	NA	-2	NM_011942	26394	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	0.100000	0.666667	
mm_75623.1	chr8	64619396	64619596	-	1	NA	NA	NA	73613	NM_013494	12876	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|R74677|fat	carboxypeptidase E	protein-coding	0.020000	0.432836	
mm_118074.1	chr13	103006224	103006424	-	1	NA	NA	NA	246069	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.000000	0.308458	
mm_167751.1	chr9	110415507	110415707	+	1	NA	NA	NA	-4201	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.015000	0.537313	
mm_143544.1	chr17	74016974	74017174	-	1	NA	NA	NA	30842	NM_053188	94224	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.005000	0.427861	
mm_3243.1	chr1	136052658	136052858	+	1	NA	NA	NA	-143	NM_001081023	12292	Mm.4418	NM_014193	ENSMUSG00000026407	Cacna1s	AW493108|Cav1.1|Cchl1a3|fmd|mdg|sj	calcium channel, voltage-dependent, L type, alpha 1S subunit	protein-coding	0.035000	0.651741	
mm_12596.1	chr2	74668118	74668318	+	1	NA	NA	NA	-92	NM_008275	15433	Mm.57227	NM_008275	ENSMUSG00000001819	Hoxd13	Hox-4.8|spdh	homeobox D13	protein-coding	0.135000	0.791045	
mm_77132.1	chr8	111346293	111346493	-	1	NA	NA	NA	-8188	NM_029005	74568	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0.015000	0.597015	
mm_13421.1	chr2	104493706	104493906	+	1	NA	NA	NA	683	NM_010434	15259	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.160000	0.796020	
mm_74949.1	chr8	25976633	25976833	-	1	NA	NA	NA	11	NM_029884	52120	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	0.125000	0.741294	
mm_102890.1	chr11	69414009	69414209	-	1	NA	NA	NA	-434	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.015000	0.557214	
mm_104348.1	chr11	94294992	94295192	-	1	NA	NA	NA	26819	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.015000	0.368159	
mm_71924.1	chr8	70234470	70234670	+	1	NA	NA	NA	-148	NM_133972	76813	Mm.383251	NM_133972	ENSMUSG00000002343	Armc6	2410153K17Rik|AW554412	armadillo repeat containing 6	protein-coding	0.130000	0.756219	
mm_11652.1	chr2	34963086	34963286	+	1	NA	NA	NA	-1414	NM_001326601	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.020000	0.447761	
mm_79418.1	chr9	55216311	55216511	+	1	NA	NA	NA	7476	NM_028049	71999	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	0.005000	0.512438	
mm_45600.1	chr5	75024925	75025125	-	1	NA	NA	NA	19616	NM_028850	74277	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	0.015000	0.442786	
mm_70155.1	chr7	143502424	143502624	-	1	NA	NA	NA	0	NM_009434	22113	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	0.115000	0.616915	-35(GTCCTTATAAAG,-,0.00),-33(CCTTATAAAGAC,+,0.00)
mm_1926.1	chr1	86064537	86064737	+	1	NA	NA	NA	18	NM_027357	70247	Mm.280013	NM_027357	ENSMUSG00000026229	Psmd1	2410026J11Rik|P112|S1	proteasome (prosome, macropain) 26S subunit, non-ATPase, 1	protein-coding	0.080000	0.666667	-84(CTGCATAAAAGA,-,0.00)
mm_162775.1	chr10	68240358	68240558	-	1	NA	NA	NA	38268	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.005000	0.318408	-53(GTATTTATAGCA,+,0.00),78(CCCTTTTAAAAA,-,0.00),79(CCTTTTAAAAAA,+,0.00)
mm_34985.1	chr4	156026238	156026438	+	1	NA	NA	NA	-4	NM_009400	21936	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	0.020000	0.577114	
mm_8711.1	chr1	158969412	158969612	-	1	NA	NA	NA	-12074	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding	0.000000	0.407960	
mm_72091.1	chr8	71580395	71580595	+	1	NA	NA	NA	11568	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.020000	0.537313	
mm_110514.1	chr12	54795606	54795806	-	1	NA	NA	NA	-44	NM_026998	72183	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	0.125000	0.736318	
mm_47277.1	chr5	122049752	122049952	-	1	NA	NA	NA	-1	NM_001312908	13048	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2|ENSMUSG00000072641	cut-like homeobox 2	protein-coding	0.145000	0.756219	
mm_159660.1	chr4	150237141	150237341	+	1	NA	NA	NA	44	NM_023119	13806	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	0.080000	0.646766	
mm_66534.1	chr7	45137583	45137783	-	1	NA	NA	NA	-1251	NR_102725	14256	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	0.020000	0.512438	
mm_58224.1	chr6	144209577	144209777	-	1	NA	NA	NA	-109	NM_001243163	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.015000	0.527363	67(CCCTTTAAGAGA,-,0.00),68(CCTTTAAGAGAA,+,0.00)
mm_136800.1	chr17	12195269	12195469	+	1	NA	NA	NA	76085	NM_026644	68262	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.010000	0.537313	
mm_46427.1	chr5	104358637	104358837	-	1	NA	NA	NA	33408	NM_053172	94111	Mm.196672	NM_053172	ENSMUSG00000053863	Mepe	Of45	matrix extracellular phosphoglycoprotein with ASARM motif (bone)	protein-coding	0.015000	0.457711	
mm_167248.1	chr8	23080147	23080347	+	1	NA	NA	NA	21988	NR_102385	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.010000	0.567164	
mm_148813.1	chr19	6296735	6296935	+	1	NA	NA	NA	-9622	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.015000	0.487562	
mm_81714.1	chr9	111351785	111351985	+	1	NA	NA	NA	40146	NM_001164659	320429	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	0.005000	0.502488	
mm_34263.1	chr4	141421661	141421861	+	1	NA	NA	NA	982	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.055000	0.651741	-92(GGCCTTATAAAG,-,0.00),-90(CCTTATAAAGCG,+,0.00)
mm_138013.1	chr17	33908301	33908501	+	1	NA	NA	NA	777	NR_045146	407803	Mm.250393	NR_045146	ENSMUSG00000092564	BC051226	-	cDNA sequence BC051226	ncRNA	0.040000	0.557214	
mm_117323.1	chr13	67755102	67755302	-	1	NA	NA	NA	-68	NM_001001130	22746	Mm.288396	NM_001001130	ENSMUSG00000058331	Zfp85	KRAB19|Rslcan2|Zfp71|Zfp85-rs1	zinc finger protein 85	protein-coding	0.040000	0.462687	
mm_35744.1	chr4	45408793	45408993	-	1	NA	NA	NA	-127	NM_001009949	230125	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0.075000	0.621891	
mm_12460.1	chr2	71334533	71334733	+	1	NA	NA	NA	32921	NM_172436	78830	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.015000	0.422886	
mm_4273.1	chr1	171559126	171559326	+	1	NA	NA	NA	33	NM_018729	18106	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0.020000	0.552239	
mm_76906.1	chr8	105833763	105833963	-	1	NA	NA	NA	6119	NM_024445	72236	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	0.010000	0.507463	
mm_58698.1	chr7	12925658	12925858	+	1	NA	NA	NA	-1658	NM_029809	381845	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0.045000	0.577114	-74(GGGTTGAAAAGG,-,0.00)
mm_42130.1	chr5	110990584	110990784	+	1	NA	NA	NA	-13460	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.010000	0.373134	
mm_68645.1	chr7	118487451	118487651	-	1	NA	NA	NA	4424	NM_001033380	319622	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	0.005000	0.213930	-50(GCTTATATAAAC,+,0.00)
mm_151523.1	chr19	58740421	58740621	+	1	NA	NA	NA	11634	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.025000	0.492537	
mm_101541.1	chr11	33527310	33527510	-	1	NA	NA	NA	-13664	NM_023146	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.005000	0.417910	
mm_63477.1	chr7	127744210	127744410	+	1	NA	NA	NA	-2465	NM_172748	233902	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.010000	0.487562	
mm_152601.1	chr19	11758927	11759127	-	1	NA	NA	NA	-11388	NM_025606	94063	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	0.020000	0.452736	
mm_29418.1	chr3	108973191	108973391	-	1	NA	NA	NA	32734	NM_001078646	66715	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0.000000	0.452736	
mm_113231.1	chr13	27243647	27243847	+	1	NA	NA	NA	1317	NM_008865	18776	Mm.37203	NM_008865	ENSMUSG00000038891	Prl3b1	Csh2|Ghd8|PL|Pl-2|Pl2|mPL-II|mplII	prolactin family 3, subfamily b, member 1	protein-coding	0.015000	0.427861	-14(CTCTTTATAGCT,+,0.00)
mm_27619.1	chr3	59343930	59344130	-	1	NA	NA	NA	226	NM_001162884	242050	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.030000	0.442786	
mm_1347.1	chr1	66302020	66302220	+	1	NA	NA	NA	-19604	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.005000	0.383085	
mm_79876.1	chr9	65195278	65195478	+	1	NA	NA	NA	-19312	NM_177460	214424	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.015000	0.547264	
mm_157091.1	chrX	9437041	9437241	-	1	NA	NA	NA	32183	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.298507	30(GCTTAAATACCT,+,0.00)
mm_2268.1	chr1	91214145	91214345	+	1	NA	NA	NA	34423	NM_001168392	51801	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	0.015000	0.487562	
mm_169371.1	chr14	34258700	34258900	+	1	NA	NA	NA	38754	NM_181529	319508	Mm.228006	NM_176931	ENSMUSG00000041479	Syt15	CHR10SYT|E230025K04Rik|sytXV	synaptotagmin XV	protein-coding	0.010000	0.477612	
mm_26882.1	chr3	17786213	17786413	-	1	NA	NA	NA	-3608	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.080000	0.716418	
mm_87324.1	chr10	42860654	42860854	+	1	NA	NA	NA	242	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.035000	0.567164	
mm_125662.1	chr15	64220406	64220606	+	1	NA	NA	NA	92167	NM_001276462	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.005000	0.487562	-33(CTCTTTAAAGTC,+,0.00)
mm_72236.1	chr8	74876250	74876450	+	1	NA	NA	NA	3176	NM_001294278	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	0.005000	0.388060	-90(CCTTTAAGAGAT,+,0.00)
mm_90426.1	chr10	127501589	127501789	+	1	NA	NA	NA	-28	NM_177707	237611	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0.015000	0.626866	
mm_170633.1	chr19	8319010	8319210	+	1	NA	NA	NA	85995	NM_177002	319800	Mm.426083	NM_177002	ENSMUSG00000052562	Slc22a30	AA986766|C730048C13Rik|UST1R	solute carrier family 22, member 30	protein-coding	0.035000	0.532338	-38(GGCTATAAAAGG,-,0.00)
mm_85324.1	chr9	101862319	101862519	-	1	NA	NA	NA	442556	NR_106163	102466241		NR_106163	ENSMUSG00000098521	Mir7243	Gm27363|mmu-mir-7243	microRNA 7243	ncRNA	0.010000	0.512438	
mm_60130.1	chr7	37215565	37215765	+	1	NA	NA	NA	517547	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.025000	0.452736	
mm_124307.1	chr14	103099392	103099592	-	1	NA	NA	NA	17	NM_015822	50789	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.155000	0.731343	
mm_138163.1	chr17	34261749	34261949	+	1	NA	NA	NA	-1378	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.010000	0.542289	
mm_2307.1	chr1	91540624	91540824	+	1	NA	NA	NA	159	NM_001039126	65247	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	0.080000	0.666667	
mm_162381.1	chr1	73928396	73928596	-	1	NA	NA	NA	-64030	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.020000	0.572139	
mm_41264.1	chr5	89028001	89028201	+	1	NA	NA	NA	140841	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.010000	0.467662	
mm_150413.1	chr19	36929931	36930131	+	1	NA	NA	NA	3952	NM_001080706	107182	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0.000000	0.363184	
mm_167365.1	chr8	85520592	85520792	+	1	NA	NA	NA	28075	NM_173866	108682	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.010000	0.452736	
mm_159703.1	chr5	27781350	27781550	-	1	NA	NA	NA	10100	NM_018878	55982	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	0.010000	0.437811	
mm_160424.1	chr8	85519272	85519472	+	1	NA	NA	NA	26755	NM_173866	108682	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.020000	0.552239	20(GCGTTTATGAGG,-,0.00)
mm_130136.1	chr15	90898323	90898523	-	1	NA	NA	NA	53	NR_033583	20738	Mm.431547	NR_033583		Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.020000	0.522388	
mm_66974.1	chr7	63918875	63919075	-	1	NA	NA	NA	2118	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.015000	0.577114	
mm_125968.1	chr15	76274267	76274467	+	1	NA	NA	NA	-4528	NR_045747	100038659	Mm.448549	NR_045747		Mirt2	ENSMUSG00000075583|Gm10872|Gm24562	myocardial infraction associated transcript 2	ncRNA	0.000000	0.447761	
mm_103236.1	chr11	70683596	70683796	-	1	NA	NA	NA	4409	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.000000	0.512438	
mm_74735.1	chr8	18741394	18741594	-	1	NA	NA	NA	68	NM_007426	11601	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	0.030000	0.522388	
mm_46654.1	chr5	108670496	108670696	-	1	NA	NA	NA	4200	NM_001310692	231583	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0.000000	0.412935	
mm_22695.1	chr3	17795645	17795845	+	1	NA	NA	NA	83	NR_029814	723950		NR_029814	ENSMUSG00000093073	Mir124a-2	Mirn124a-2|mir-124-2|mir-124a-2	microRNA 124a-2	ncRNA	0.040000	0.497512	
mm_2848.1	chr1	131661821	131662021	+	1	NA	NA	NA	23607	NM_007799	13034	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	0.005000	0.567164	
mm_62474.1	chr7	101837768	101837968	+	1	NA	NA	NA	-44	NM_001122739	16332	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0.150000	0.716418	
mm_79322.1	chr9	52679754	52679954	+	1	NA	NA	NA	-9	NR_045333	382139	Mm.335162	NR_045333	ENSMUSG00000111020	Gm1715	-	predicted gene 1715	ncRNA	0.015000	0.616915	
mm_46656.1	chr5	108674681	108674881	-	1	NA	NA	NA	15	NM_001310692	231583	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0.010000	0.512438	
mm_138329.1	chr17	34856278	34856478	+	1	NA	NA	NA	1254	NR_105938	102465587		NR_105938	ENSMUSG00000098445	Mir6972	Gm27810|mmu-mir-6972	microRNA 6972	ncRNA	0.010000	0.457711	45(CTCTTTATAGAA,+,0.00)
mm_44487.1	chr5	23616463	23616663	-	1	NA	NA	NA	8	NM_009274	20817	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	0.015000	0.447761	-67(CTGCTTAAAAGA,-,0.00),15(CCCTTTATAGCA,+,0.00)
mm_39234.1	chr4	156254615	156254815	-	1	NA	NA	NA	623	NM_001110516	231004	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	0.040000	0.582090	
mm_2574.1	chr1	118481410	118481610	+	1	NA	NA	NA	-22245	NR_027901	68204	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.005000	0.452736	-88(TCATTTAAAGGC,+,0.00),-35(CAGCTTTAAAGG,-,0.00),-34(AGCTTTAAAGGC,-,0.00),-33(GCTTTAAAGGCA,+,0.00)
mm_6485.1	chr1	74108227	74108427	-	1	NA	NA	NA	16120	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.005000	0.547264	
mm_26544.1	chr3	146182871	146183071	+	1	NA	NA	NA	32797	NM_001005846	68279	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.010000	0.398010	
mm_93010.1	chr10	87058269	87058469	-	1	NA	NA	NA	323	NM_029685	76640	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding	0.065000	0.651741	
mm_63863.1	chr7	135684030	135684230	+	1	NA	NA	NA	-31816	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.000000	0.492537	-74(GAGTTTTAAAAG,-,0.00),-73(AGTTTTAAAAGG,-,0.00),-72(GTTTTAAAAGGC,+,0.00)
mm_146008.1	chr18	69344481	69344681	+	1	NA	NA	NA	89	NM_013685	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.040000	0.487562	-64(CTCTTTATAAGC,-,0.00),-62(CTTTATAAGCCG,+,0.00)
mm_82270.1	chr9	7348610	7348810	-	1	NA	NA	NA	1336	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.447761	
mm_41672.1	chr5	99649663	99649863	+	1	NA	NA	NA	79297	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.020000	0.567164	
mm_114645.1	chr13	76825103	76825303	+	1	NA	NA	NA	310265	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0.020000	0.472637	
mm_30467.1	chr3	154328553	154328753	-	1	NA	NA	NA	1907	NM_010713	16875	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.160000	0.810945	
mm_106460.1	chr11	120041682	120041882	-	1	NA	NA	NA	-1	NM_001198787	11302	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0.025000	0.621891	
mm_109593.1	chr12	112644560	112644760	+	1	NA	NA	NA	-168	NM_001161737	30954	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.075000	0.676617	
mm_159519.1	chr4	61228248	61228448	-	1	NA	NA	NA	-62	NM_001134674	100039089	Mm.443549	NM_001134674	ENSMUSG00000089873	Mup13	Gm13513|Mup11|OTTMUSG00000012492	major urinary protein 13	protein-coding	0.010000	0.368159	88(GAGTATATAAGG,-,0.00)
mm_84557.1	chr9	67713394	67713594	-	1	NA	NA	NA	14286	NR_106100	102466824		NR_106100	ENSMUSG00000098937	Mir7241	Gm27918|mmu-mir-7241	microRNA 7241	ncRNA	0.005000	0.373134	
mm_41917.1	chr5	105599519	105599719	+	1	NA	NA	NA	80148	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.005000	0.388060	
mm_117954.1	chr13	99444366	99444566	-	1	NA	NA	NA	-31640	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.567164	
mm_73179.1	chr8	95058289	95058489	+	1	NA	NA	NA	3286	NM_001042715	330830	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.010000	0.567164	
mm_118842.1	chr14	25650416	25650616	+	1	NA	NA	NA	-43654	NM_134084	105675	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.035000	0.562189	
mm_110453.1	chr12	51637213	51637413	-	1	NA	NA	NA	43972	NM_001198835	12810	Mm.21325	NM_007728	ENSMUSG00000020953	Coch	AW122937|Coch-5B2|D12H14S564E	cochlin	protein-coding	0.005000	0.338308	-7(TTTTTTAAAGCT,+,0.00)
mm_79440.1	chr9	56089938	56090138	+	1	NA	NA	NA	62	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.025000	0.676617	
mm_165737.1	chr3	107211328	107211528	-	1	NA	NA	NA	10304	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.512438	
mm_140330.1	chr17	86754028	86754228	+	1	NA	NA	NA	264	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.055000	0.661692	
mm_129229.1	chr15	76614262	76614462	-	1	NA	NA	NA	2490	NM_028064	72027	Mm.276829	NM_028064	ENSMUSG00000063354	Slc39a4	1600025H15Rik|AU041686|AWMS2|ZIP4	solute carrier family 39 (zinc transporter), member 4	protein-coding	0.005000	0.517413	
mm_24456.1	chr3	90613649	90613849	+	1	NA	NA	NA	855	NM_011313	20200	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0.005000	0.552239	
mm_138702.1	chr17	36000572	36000772	+	1	NA	NA	NA	6168	NR_015618	77810	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0.010000	0.388060	
mm_148210.1	chr18	80172832	80173032	-	1	NA	NA	NA	-13307	NR_131039	105246506	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	0.010000	0.432836	
mm_91931.1	chr10	60454848	60455048	-	1	NA	NA	NA	55222	NM_001164374	100302688	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.005000	0.368159	
mm_46266.1	chr5	99964652	99964852	-	1	NA	NA	NA	14186	NM_001077266	11991	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.005000	0.358209	
mm_165490.1	chr2	164613598	164613798	+	1	NA	NA	NA	-2	NM_001012725	433502	Mm.376157	NM_001012725	ENSMUSG00000070531	Wfdc6b	WAP6b|Wfdc6	WAP four-disulfide core domain 6B	protein-coding	0.025000	0.592040	
mm_124910.1	chr15	11000656	11000856	+	1	NA	NA	NA	35	NM_053077	22293	Mm.138278	NM_053077	ENSMUSG00000022243	Slc45a2	Aim-1|Aim1|Dbr|Matp|Oca4|blanc-sale|bls|uw	solute carrier family 45, member 2	protein-coding	0.025000	0.517413	
mm_61206.1	chr7	64153846	64154046	+	1	NA	NA	NA	111	NM_001039104	17364	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.005000	0.572139	
mm_170659.1	chr2	109109607	109109807	+	1	NA	NA	NA	168583	NM_029790	76894	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.020000	0.383085	
mm_105023.1	chr11	100461569	100461769	-	1	NA	NA	NA	11113	NM_172565	217194	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	0.000000	0.353234	60(GGCCATATATAG,-,0.00),62(CCATATATAGAT,+,0.00)
mm_136241.1	chr16	90934654	90934854	-	1	NA	NA	NA	95	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.110000	0.696517	
mm_160548.1	chr9	45195634	45195834	+	1	NA	NA	NA	-32	NM_001198971	408059	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	-	cDNA sequence BC049352	protein-coding	0.000000	0.572139	
mm_81881.1	chr9	119341288	119341488	+	1	NA	NA	NA	94	NM_130864	113868	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	0.055000	0.577114	-65(CCCTCTAAAGAC,-,0.00)
mm_117382.1	chr13	73344148	73344348	-	1	NA	NA	NA	3136	NR_045293	432777	Mm.415319	NR_045293		D630045M09Rik	AU019512	RIKEN cDNA D630045M09 gene	ncRNA	0.005000	0.432836	
mm_128972.1	chr15	74832278	74832478	-	1	NA	NA	NA	9265	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.010000	0.328358	
mm_140411.1	chr17	87647414	87647614	+	1	NA	NA	NA	11535	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.020000	0.492537	
mm_75896.1	chr8	70897343	70897543	-	1	NA	NA	NA	0	NM_029751	76808	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	0.070000	0.572139	
mm_59694.1	chr7	28540775	28540975	+	1	NA	NA	NA	-10	NM_026716	68416	Mm.25210	NM_026716	ENSMUSG00000084174	Sycn	0910001K16Rik|1810038B08Rik|SYL	syncollin	protein-coding	0.010000	0.552239	
mm_60285.1	chr7	43979010	43979210	+	1	NA	NA	NA	3049	NM_010116	13648	Mm.440884	NM_010116	ENSMUSG00000059042	Klk1b9	EGF-BP C|Egfbp-3|Egfbp3|KAL|Klk9|kallikrein|mGk-9	kallikrein 1-related peptidase b9	protein-coding	0.010000	0.562189	
mm_87826.1	chr10	60350966	60351166	+	1	NA	NA	NA	4215	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.010000	0.467662	
mm_77677.1	chr8	125054541	125054741	-	1	NA	NA	NA	446	NM_174854	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	0.090000	0.701493	
mm_27904.1	chr3	79509230	79509430	-	1	NA	NA	NA	58349	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.010000	0.547264	
mm_58469.1	chr7	3390374	3390574	+	1	NA	NA	NA	-3568	NM_133190	81905	Mm.357990	NM_133190	ENSMUSG00000053395	Cacng8	-	calcium channel, voltage-dependent, gamma subunit 8	protein-coding	0.000000	0.502488	
mm_83968.1	chr9	57158148	57158348	-	1	NA	NA	NA	51	NM_025417	66199	Mm.41687	NM_025417	ENSMUSG00000032299	Commd4	1110039H05Rik	COMM domain containing 4	protein-coding	0.050000	0.557214	
mm_22142.1	chr2	172042954	172043154	-	1	NA	NA	NA	412	NM_175631	228942	Mm.40555	NM_175631	ENSMUSG00000067578	Cbln4	AI848962	cerebellin 4 precursor protein	protein-coding	0.085000	0.631841	-33(TCCTATAAATAG,-,0.00)
mm_94762.1	chr11	21219455	21219655	+	1	NA	NA	NA	-19477	NM_139061	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.010000	0.427861	
mm_27744.1	chr3	69126948	69127148	-	1	NA	NA	NA	44	NM_008467	16649	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	0.120000	0.736318	
mm_11994.1	chr2	55597230	55597430	+	1	NA	NA	NA	161360	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.005000	0.358209	
mm_119628.1	chr14	51145397	51145597	+	1	NA	NA	NA	1270	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.005000	0.517413	
mm_2104.1	chr1	87803839	87804039	+	1	NA	NA	NA	259	NM_009118	20215	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	0.020000	0.582090	
mm_6006.1	chr1	58973292	58973492	-	1	NA	NA	NA	90	NM_172406	70827	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	0.070000	0.646766	
mm_107071.1	chr12	16904875	16905075	+	1	NA	NA	NA	9997	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0.005000	0.373134	
mm_42787.1	chr5	121463117	121463317	+	1	NA	NA	NA	36	NM_001161627	77462	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	0.010000	0.601990	0(GTCTTTATGGCC,+,0.00)
mm_59942.1	chr7	30425141	30425341	+	1	NA	NA	NA	1937	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.015000	0.572139	
mm_19728.1	chr2	104493648	104493848	-	1	NA	NA	NA	741	NM_010434	15259	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.135000	0.731343	
mm_92104.1	chr10	63023664	63023864	-	1	NA	NA	NA	85	NM_001079824	432467	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	0.135000	0.711443	
mm_94482.1	chr11	6588129	6588329	+	1	NA	NA	NA	17825	NM_001081652	192950	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	0.000000	0.462687	
mm_104063.1	chr11	86584931	86585131	-	1	NA	NA	NA	-873	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.373134	34(GGCTTTTTAGGC,-,0.00)
mm_89563.1	chr10	95411937	95412137	+	1	NA	NA	NA	3246	NM_001168657	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.025000	0.353234	
mm_86196.1	chr9	119937436	119937636	-	1	NA	NA	NA	22	NM_028976	74498	Mm.104789	NM_028976	ENSMUSG00000032513	Gorasp1	5430411C10Rik|GOLPH5|GRASP65|P65	golgi reassembly stacking protein 1	protein-coding	0.085000	0.696517	
mm_43556.1	chr5	137610297	137610497	+	1	NA	NA	NA	1007	NM_008788	18542	Mm.262345	NM_008788	ENSMUSG00000029718	Pcolce	Astt-2|Astt2|P14|PCPE-1	procollagen C-endopeptidase enhancer protein	protein-coding	0.030000	0.592040	
mm_145120.1	chr18	44380417	44380617	+	1	NA	NA	NA	17	NM_027490	70640	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0.135000	0.751244	
mm_28494.1	chr3	92484316	92484516	-	1	NA	NA	NA	1465	NM_009264	20753	Mm.331191	NM_009264	ENSMUSG00000050359	Sprr1a	AI528815|SPR1a|mSPRR1A	small proline-rich protein 1A	protein-coding	0.015000	0.676617	
mm_23039.1	chr3	34760376	34760576	+	1	NA	NA	NA	-11599	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA	0.005000	0.517413	
mm_152669.1	chr19	14597676	14597876	-	1	NA	NA	NA	407	NM_001302950	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.045000	0.437811	-46(GCCTTTTAAAAG,-,0.00),-45(CCTTTTAAAAGA,+,0.00),-45(CCTTTTAAAAGA,-,0.00),-44(CTTTTAAAAGAT,+,0.00)
mm_69716.1	chr7	140164052	140164252	-	1	NA	NA	NA	-1204	NM_146952	258954	Mm.377769	NM_146952	ENSMUSG00000051180	Olfr522	MOR103-5	olfactory receptor 522	protein-coding	0.000000	0.502488	
mm_59337.1	chr7	25463559	25463759	+	1	NA	NA	NA	13966	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.030000	0.507463	
mm_46260.1	chr5	99721884	99722084	-	1	NA	NA	NA	7076	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.015000	0.338308	
mm_83829.1	chr9	54068391	54068591	-	1	NA	NA	NA	-80	NM_001033535	244882	Mm.325589	NM_001033535	ENSMUSG00000074345	Tnfaip8l3	9930029P06Rik|Gm517	tumor necrosis factor, alpha-induced protein 8-like 3	protein-coding	0.055000	0.711443	
mm_11012.1	chr2	26580985	26581185	+	1	NA	NA	NA	29	NM_178444	353156	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0.020000	0.606965	
mm_152382.1	chr19	10272832	10273032	-	1	NA	NA	NA	31945	NM_198114	269060	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.035000	0.631841	
mm_5847.1	chr1	52963185	52963385	-	1	NA	NA	NA	-10445	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.005000	0.472637	
mm_146450.1	chr18	86394737	86394937	+	1	NA	NA	NA	-115	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.020000	0.552239	
mm_112054.1	chr12	111809857	111810057	-	1	NA	NA	NA	3922	NM_028875	74335	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	0.040000	0.676617	
mm_68754.1	chr7	121069504	121069704	-	1	NA	NA	NA	4926	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.010000	0.323383	
mm_73379.1	chr8	105636853	105637053	+	1	NA	NA	NA	415	NM_181322	13018	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0.120000	0.721393	
mm_85935.1	chr9	112097874	112098074	-	1	NA	NA	NA	20737	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.025000	0.487562	
mm_128258.1	chr15	36771184	36771384	-	1	NA	NA	NA	19648	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.010000	0.462687	
mm_165500.1	chr2	167381904	167382104	+	1	NA	NA	NA	-32826	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.020000	0.452736	58(TTCCTTAAAAAC,-,0.00),60(CCTTAAAAACAA,+,0.00)
mm_114496.1	chr13	69959770	69959970	+	1	NA	NA	NA	37	NR_138559	67550	Mm.158159	NR_138559		4933416O17Rik	-	RIKEN cDNA 4933416O17 gene	ncRNA	0.005000	0.412935	
mm_92445.1	chr10	77607016	77607216	-	1	NA	NA	NA	518	NM_001301671	20610	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.025000	0.472637	
mm_64889.1	chr7	15922246	15922446	-	1	NA	NA	NA	25	NM_009156	20364	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0.095000	0.631841	
mm_8003.1	chr1	134549575	134549775	-	1	NA	NA	NA	7	NM_001145300	71001	Mm.158529	NM_183292	ENSMUSG00000046367	Mgat4e	4931440L10Rik	MGAT4 family, member E	protein-coding	0.000000	0.532338	
mm_130839.1	chr15	101851882	101852082	-	1	NA	NA	NA	-1196	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.035000	0.542289	
mm_79340.1	chr9	53367645	53367845	+	1	NA	NA	NA	-16278	NM_212445	68304	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0.030000	0.487562	
mm_78174.1	chr9	21165641	21165841	+	1	NA	NA	NA	27	NM_183408	18577	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.130000	0.791045	
mm_9903.1	chr1	187142988	187143188	-	1	NA	NA	NA	17950	NR_040554	69308	Mm.490882	NR_040554	ENSMUSG00000089730	1700007P06Rik	-	RIKEN cDNA 1700007P06 gene	ncRNA	0.020000	0.492537	
mm_10940.1	chr2	25500678	25500878	+	1	NA	NA	NA	0	NM_013908	30839	Mm.29170	NM_013908	ENSMUSG00000015095	Fbxw5	AI159739|Fbw5	F-box and WD-40 domain protein 5	protein-coding	0.105000	0.676617	
mm_118879.1	chr14	25869516	25869716	+	1	NA	NA	NA	27461	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.015000	0.547264	
mm_53184.1	chr6	125432642	125432842	+	1	NA	NA	NA	-52238	NM_198604	213522	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.015000	0.492537	
mm_16968.1	chr2	17706925	17707125	-	1	NA	NA	NA	24043	NM_028757	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0.025000	0.348259	
mm_152797.1	chr19	21630673	21630873	-	1	NA	NA	NA	22018	NM_025423	66206	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0.020000	0.497512	
mm_17552.1	chr2	30093524	30093724	-	1	NA	NA	NA	11	NM_025428	66220	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	0.085000	0.701493	
mm_52341.1	chr6	110736170	110736370	+	1	NA	NA	NA	90672	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.015000	0.452736	
mm_92342.1	chr10	75835469	75835669	-	1	NA	NA	NA	-688	NM_010361	14872	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.020000	0.507463	
mm_144199.1	chr18	9212063	9212263	+	1	NA	NA	NA	-693	NM_008058	14370	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0.055000	0.606965	
mm_129849.1	chr15	83170077	83170277	-	1	NA	NA	NA	2031	NM_029787	109754	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.015000	0.592040	
mm_117232.1	chr13	64274835	64275035	-	1	NA	NA	NA	53	NM_172587	218294	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	0.100000	0.711443	
mm_119612.1	chr14	51105349	51105549	+	1	NA	NA	NA	9449	NM_201239	58809	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	0.015000	0.437811	
mm_120533.1	chr14	67233095	67233295	+	1	NA	NA	NA	-97	NM_010095	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.030000	0.567164	
mm_98508.1	chr11	94952182	94952382	+	1	NA	NA	NA	-15311	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.010000	0.597015	
mm_68002.1	chr7	100938118	100938318	-	1	NA	NA	NA	-6057	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.030000	0.582090	
mm_164927.1	chr18	80253199	80253399	+	1	NA	NA	NA	-1946	NM_001164420	66943	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.005000	0.522388	
mm_130828.1	chr15	101846180	101846380	-	1	NA	NA	NA	4506	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.085000	0.636816	
mm_136066.1	chr16	84735141	84735341	-	1	NA	NA	NA	61	NM_017404	27393	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	0.120000	0.671642	
mm_156441.1	chrX	142228195	142228395	+	1	NA	NA	NA	118	NM_172782	237082	Mm.41899	NM_172782	ENSMUSG00000042271	Nxt2	6330587F24Rik|AI787442|P15-2	nuclear transport factor 2-like export factor 2	protein-coding	0.055000	0.587065	
mm_63646.1	chr7	128688361	128688561	+	1	NA	NA	NA	-409	NM_001346517	101490	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0.120000	0.691542	
mm_42351.1	chr5	114911402	114911602	+	1	NA	NA	NA	-11738	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.010000	0.462687	
mm_92010.1	chr10	62340069	62340269	-	1	NA	NA	NA	252	NM_001146100	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.060000	0.681592	
mm_95434.1	chr11	50210851	50211051	+	1	NA	NA	NA	-131	NM_011018	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.055000	0.606965	-96(GCCTCTATGAGC,-,0.00)
mm_87144.1	chr10	34483473	34483673	+	1	NA	NA	NA	173	NM_010237	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.025000	0.542289	
mm_30944.1	chr4	33063188	33063388	+	1	NA	NA	NA	176	NM_008076	14409	Mm.6227	NM_008076	ENSMUSG00000023267	Gabrr2	-	gamma-aminobutyric acid (GABA) C receptor, subunit rho 2	protein-coding	0.010000	0.527363	-86(GCCCATTAAAAG,-,0.00),-84(CCATTAAAAGTC,+,0.00)
mm_170993.1	chr2	75191665	75191865	-	1	NA	NA	NA	252414	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA	0.065000	0.577114	
mm_89749.1	chr10	99261780	99261980	+	1	NA	NA	NA	-1351	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.095000	0.666667	
mm_82480.1	chr9	17556222	17556422	-	1	NA	NA	NA	-735945	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.005000	0.532338	
mm_128006.1	chr15	12962177	12962377	-	1	NA	NA	NA	137462	NM_001130149	14000	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	0.030000	0.502488	
mm_152939.1	chr19	28742483	28742683	-	1	NA	NA	NA	-62506	NM_175459	226075	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	0.025000	0.472637	
mm_90837.1	chr10	8518383	8518583	-	1	NA	NA	NA	342	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.100000	0.716418	
mm_126138.1	chr15	78347973	78348173	+	1	NA	NA	NA	-526	NR_106137	102465776		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0.020000	0.517413	
mm_110767.1	chr12	70232246	70232446	-	1	NA	NA	NA	4505	NR_045174	414124	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	0.015000	0.452736	
mm_82768.1	chr9	26922973	26923173	-	1	NA	NA	NA	8	NM_001281475	382064	Mm.335028	NM_001177509	ENSMUSG00000079644	Gm1110	-	predicted gene 1110	protein-coding	0.035000	0.567164	
mm_82835.1	chr9	31150486	31150686	-	1	NA	NA	NA	-18787	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.005000	0.278607	41(CTATATAAATGG,-,0.00)
mm_30960.1	chr4	33924544	33924744	+	1	NA	NA	NA	12	NM_007726	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding	0.100000	0.696517	
mm_110417.1	chr12	46785171	46785371	-	1	NA	NA	NA	33504	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.010000	0.303483	
mm_142832.1	chr17	51782509	51782709	-	1	NA	NA	NA	29445	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.035000	0.502488	
mm_64525.1	chr7	143978019	143978219	+	1	NA	NA	NA	-31135	NR_037292	100526562		NR_037292	ENSMUSG00000093221	Mir3105	mmu-mir-3105	microRNA 3105	ncRNA	0.095000	0.726368	
mm_66313.1	chr7	39910848	39911048	-	1	NA	NA	NA	393182	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.005000	0.348259	
mm_20337.1	chr2	127584586	127584786	-	1	NA	NA	NA	-9	NM_028141	72180	Mm.46715	NM_028141	ENSMUSG00000034800	Zfp661	2810405K07Rik|A1-5|Znf2	zinc finger protein 661	protein-coding	0.080000	0.582090	
mm_69994.1	chr7	142385502	142385702	-	1	NA	NA	NA	2268	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.030000	0.552239	
mm_23031.1	chr3	34650128	34650328	+	1	NA	NA	NA	233	NM_011443	20674	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0.095000	0.616915	
mm_95743.1	chr11	54701988	54702188	+	1	NA	NA	NA	85615	NM_178626	72729	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.015000	0.452736	
mm_17524.1	chr2	29252836	29253036	-	1	NA	NA	NA	57	NR_029460	76220	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0.080000	0.631841	
mm_97681.1	chr11	79993112	79993312	+	1	NA	NA	NA	106	NM_199196	52615	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	suppressor of zeste 12 homolog (Drosophila)	protein-coding	0.070000	0.691542	
mm_13200.1	chr2	93453387	93453587	+	1	NA	NA	NA	668	NR_040533	100038525	Mm.440596	NR_040532	ENSMUSG00000075025	Gm10804	ENSMUSG00000075025	predicted gene 10804	ncRNA	0.030000	0.517413	
mm_168500.1	chr1	152902015	152902215	-	1	NA	NA	NA	531	NM_001160256	226517	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.110000	0.721393	
mm_37239.1	chr4	118134580	118134780	-	1	NA	NA	NA	266	NM_001285520	20441	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.135000	0.810945	
mm_15858.1	chr2	164805154	164805354	+	1	NA	NA	NA	140	NM_178375	67538	Mm.33184	NM_178375	ENSMUSG00000045822	Zswim3	4921517A06Rik|C86566	zinc finger SWIM-type containing 3	protein-coding	0.045000	0.616915	
mm_79021.1	chr9	45906433	45906633	+	1	NA	NA	NA	-36	NM_008794	18554	Mm.3255	NM_008794	ENSMUSG00000035382	Pcsk7	AA959856|PC7|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding	0.155000	0.786070	
mm_75258.1	chr8	40591738	40591938	-	1	NA	NA	NA	42954	NM_001040699	54384	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.020000	0.542289	
mm_169865.1	chr16	33844575	33844775	+	1	NA	NA	NA	15010	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.010000	0.452736	-9(TTCTTTATAGCC,+,0.00)
mm_117634.1	chr13	92173770	92173970	-	1	NA	NA	NA	-180913	NM_010049	13361	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0.005000	0.502488	
mm_108481.1	chr12	83660518	83660718	+	1	NA	NA	NA	-27945	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.005000	0.288557	-21(GGATATAAATGC,-,0.00)
mm_80713.1	chr9	92275596	92275796	+	1	NA	NA	NA	94	NM_001195084	18828	Mm.10306	NM_008880	ENSMUSG00000032372	Plscr2	-	phospholipid scramblase 2	protein-coding	0.005000	0.462687	
mm_25255.1	chr3	104771638	104771838	+	1	NA	NA	NA	5809	NM_183224	329731	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	0.005000	0.507463	
mm_68597.1	chr7	116198402	116198602	-	1	NA	NA	NA	59	NM_001305189	233765	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.025000	0.601990	
mm_110936.1	chr12	76473988	76474188	-	1	NA	NA	NA	29591	NR_028520	100041694	Mm.259350	NR_028520		Gm10451	ENSMUSG00000073000	predicted gene 10451	ncRNA	0.035000	0.507463	
mm_122337.1	chr14	37135034	37135234	-	1	NA	NA	NA	5	NM_001199122	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.095000	0.696517	
mm_92027.1	chr10	62455586	62455786	-	1	NA	NA	NA	-5993	NM_181423	338359	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	0.005000	0.482587	
mm_3593.1	chr1	151428631	151428831	+	1	NA	NA	NA	83	NM_026876	98685	Mm.289373	NM_026876	ENSMUSG00000053286	Trmt1l	1190005F20Rik|AW226554|C1orf25|Trm1-like|Trm1l	tRNA methyltransferase 1 like	protein-coding	0.070000	0.592040	
mm_2468.1	chr1	105663795	105663995	+	1	NA	NA	NA	34	NM_173187	227446	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	0.060000	0.671642	
mm_46689.1	chr5	110057933	110058133	-	1	NA	NA	NA	-41936	NM_207279	403178	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0.040000	0.522388	-64(CCTTTTAGGCGC,+,0.00)
mm_16300.1	chr2	174289430	174289630	+	1	NA	NA	NA	5210	NM_022000	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.015000	0.462687	10(CTTTTTATATGC,+,0.00)
mm_125195.1	chr15	32778816	32779016	+	1	NA	NA	NA	-141807	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0.065000	0.641791	
mm_36431.1	chr4	82294344	82294544	-	1	NA	NA	NA	211335	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.000000	0.402985	
mm_99388.1	chr11	102097404	102097604	+	1	NA	NA	NA	3796	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.050000	0.532338	
mm_65906.1	chr7	30193032	30193232	-	1	NA	NA	NA	1916	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.020000	0.547264	
mm_88111.1	chr10	69151338	69151538	+	1	NA	NA	NA	-57114	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.030000	0.542289	
mm_159787.1	chr5	107507284	107507484	+	1	NA	NA	NA	9605	NM_001168557	231570	Mm.261891	NM_001007574	ENSMUSG00000044060	A830010M20Rik	AI849226|Kiaa1107|mKIAA1107	RIKEN cDNA A830010M20 gene	protein-coding	0.020000	0.502488	
mm_137357.1	chr17	25308545	25308745	+	1	NA	NA	NA	-1	NM_053259	114661	Mm.207081	NM_053259	ENSMUSG00000024171	Prss28	Isp1|mIsp-1	protease, serine 28	protein-coding	0.000000	0.447761	
mm_86460.1	chr10	4355583	4355783	+	1	NA	NA	NA	32425	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.040000	0.552239	
mm_75475.1	chr8	48555122	48555322	-	1	NA	NA	NA	119468	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.135000	0.736318	
mm_173095.1	chrX	151800993	151801193	+	1	NA	NA	NA	-2189	NM_021523	59026	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	0.040000	0.631841	
mm_170239.1	chr17	89751755	89751955	+	1	NA	NA	NA	336513	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.040000	0.557214	
mm_172718.1	chr8	70896190	70896390	-	1	NA	NA	NA	-434	NR_002901	104370		NR_002901		Snora68	MBI-30|Rnu68	small nucleolar RNA, H/ACA box 68	snoRNA	0.030000	0.557214	
mm_86416.1	chr10	3452442	3452642	+	1	NA	NA	NA	86392	NM_133485	76142	Mm.308126	NM_133485	ENSMUSG00000040653	Ppp1r14c	6330514J04Rik|KEPI	protein phosphatase 1, regulatory (inhibitor) subunit 14c	protein-coding	0.000000	0.457711	
mm_110835.1	chr12	72846118	72846318	-	1	NA	NA	NA	71547	NM_029444	75801	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	0.010000	0.482587	
mm_157355.1	chrX	37048598	37048798	-	1	NA	NA	NA	-147	NM_173779	245381	Mm.123697	NM_173779	ENSMUSG00000044400	Sowahd	A630014H24Rik|Ankrd58	sosondowah ankyrin repeat domain family member D	protein-coding	0.070000	0.676617	
mm_159552.1	chr4	102870449	102870649	+	1	NA	NA	NA	110414	NM_001285859	73094	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0.015000	0.427861	
mm_92808.1	chr10	81378736	81378936	-	1	NA	NA	NA	-466	NM_019757	56371	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy/cell division cycle 20 related 1 (Drosophila)	protein-coding	0.085000	0.626866	
mm_6543.1	chr1	75125142	75125342	-	1	NA	NA	NA	8648	NM_194333	22626	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.050000	0.646766	
mm_97183.1	chr11	75563560	75563760	+	1	NA	NA	NA	12231	NR_039553	100628624		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0.015000	0.552239	
mm_113426.1	chr13	34130495	34130695	+	1	NA	NA	NA	-241	NM_023716	73710	Mm.379227	NM_023716	ENSMUSG00000045136	Tubb2b	2410129E14Rik|brdp	tubulin, beta 2B class IIB	protein-coding	0.050000	0.606965	
mm_106153.1	chr11	116617512	116617712	-	1	NA	NA	NA	6640	NM_001167680	217344	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.025000	0.547264	
mm_116369.1	chr13	40731512	40731712	-	1	NA	NA	NA	-1155	NM_001122948	21418	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.110000	0.726368	
mm_28735.1	chr3	95736523	95736723	-	1	NA	NA	NA	-1650	NR_105981	102466787		NR_105981	ENSMUSG00000098737	Mir7014	Gm27837|mmu-mir-7014	microRNA 7014	ncRNA	0.045000	0.616915	
mm_111696.1	chr12	103656284	103656484	-	1	NA	NA	NA	834	NM_007618	12401	Mm.290079	NM_007618	ENSMUSG00000060807	Serpina6	Cbg	serine (or cysteine) peptidase inhibitor, clade A, member 6	protein-coding	0.020000	0.492537	-56(GGCCTTAAAGAG,-,0.00),-54(CCTTAAAGAGCC,+,0.00)
mm_162202.1	chrX	135177503	135177703	-	1	NA	NA	NA	11	NM_001099321	100040635	Mm.336240	NM_001099321	ENSMUSG00000079432	Gm15023	OTTMUSG00000018782	predicted gene 15023	protein-coding	0.040000	0.527363	
mm_154759.1	chrX	10911461	10911661	+	1	NA	NA	NA	194196	NM_001166635	68041	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	0.015000	0.432836	-93(GTCTTTTAAAGA,-,0.00),-92(TCTTTTAAAGAT,+,0.00)
mm_77582.1	chr8	123754049	123754249	-	1	NA	NA	NA	20191	NR_040702	234863	Mm.246601	NR_040702	ENSMUSG00000110599	6030466F02Rik	-	RIKEN cDNA 6030466F02 gene	ncRNA	0.020000	0.477612	-28(GCCTTTTAAAGG,-,0.00),-27(CCTTTTAAAGGC,+,0.00),-26(CTTTTAAAGGCG,+,0.00)
mm_36330.1	chr4	70534846	70535046	-	1	NA	NA	NA	-18	NM_172694	230316	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.120000	0.716418	
mm_163079.1	chr11	68871957	68872157	+	1	NA	NA	NA	-16496	NM_177060	320040	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	0.020000	0.542289	
mm_88527.1	chr10	78078787	78078987	+	1	NA	NA	NA	9519	NM_015790	50723	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.010000	0.422886	
mm_72253.1	chr8	75094459	75094659	+	1	NA	NA	NA	941	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.005000	0.308458	
mm_15361.1	chr2	156418592	156418792	+	1	NA	NA	NA	-2217	NM_001291122	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.015000	0.557214	
mm_68806.1	chr7	125491432	125491632	-	1	NA	NA	NA	10	NM_026330	67711	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.105000	0.641791	
mm_143397.1	chr17	70746787	70746987	-	1	NA	NA	NA	99890	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.030000	0.427861	
mm_9623.1	chr1	176756226	176756426	-	1	NA	NA	NA	16097	NR_029775	723921		NR_029775	ENSMUSG00000065573	Mir350	Mirn350|mir-350|mmu-mir-350	microRNA 350	ncRNA	0.015000	0.442786	
mm_75580.1	chr8	61480409	61480609	-	1	NA	NA	NA	-7225	NM_145595	234309	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.010000	0.527363	
mm_108206.1	chr12	76909390	76909590	+	1	NA	NA	NA	52758	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.020000	0.537313	
mm_48381.1	chr5	139771511	139771711	-	1	NA	NA	NA	-3668	NR_106004	102465628		NR_106004	ENSMUSG00000098574	Mir7037	Gm27447|mmu-mir-7037	microRNA 7037	ncRNA	0.055000	0.597015	
mm_84625.1	chr9	70656036	70656236	-	1	NA	NA	NA	1038	NM_172772	235461	Mm.170855	NM_172772	ENSMUSG00000042444	Fam63b	AI465301|B230380D07Rik|mKIAA1164	family with sequence similarity 63, member B	protein-coding	0.005000	0.427861	
mm_158425.1	chrX	139782264	139782464	-	1	NA	NA	NA	-11	NM_001037915	622473	Mm.391312	NM_001037915	ENSMUSG00000072945	Ripply1	-	ripply transcriptional repressor 1	protein-coding	0.005000	0.542289	-34(GCTTATAAAAGG,+,0.00),-34(GCTTATAAAAGG,-,0.00)
mm_90977.1	chr10	13552763	13552963	-	1	NA	NA	NA	-44	NM_025748	66757	Mm.331841	NM_025748	ENSMUSG00000019808	Adat2	4933426M09Rik|Deadc1	adenosine deaminase, tRNA-specific 2	protein-coding	0.025000	0.512438	
mm_114871.1	chr13	94083329	94083529	+	1	NA	NA	NA	25633	NM_172589	218454	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.020000	0.417910	33(CTCCTTTAAAAG,-,0.00),34(TCCTTTAAAAGC,-,0.00),35(CCTTTAAAAGCT,+,0.00)
mm_168801.1	chr12	20312107	20312307	+	1	NA	NA	NA	503572	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.125000	0.736318	
mm_112928.1	chr13	20959486	20959686	+	1	NA	NA	NA	113713	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.020000	0.507463	
mm_149218.1	chr19	10001598	10001798	+	1	NA	NA	NA	29	NM_001347429	74760	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	0.005000	0.577114	
mm_45582.1	chr5	74029150	74029350	-	1	NA	NA	NA	39161	NM_177561	69727	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.045000	0.437811	
mm_138609.1	chr17	35667569	35667769	+	1	NA	NA	NA	-77	NM_175137	68915	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	0.105000	0.557214	
mm_169077.1	chr13	3231380	3231580	+	1	NA	NA	NA	82005	NR_001581	73266	Mm.335891	NR_001581		Speer6-ps1	1700039A02Rik|SPEER-6	spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1	pseudo	0.025000	0.492537	
mm_122126.1	chr14	31155627	31155827	-	1	NA	NA	NA	12914	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.015000	0.562189	
mm_38726.1	chr4	145235748	145235948	-	1	NA	NA	NA	11022	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.020000	0.497512	
mm_134986.1	chr16	32135939	32136139	-	1	NA	NA	NA	29437	NM_146069	224109	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.015000	0.472637	
mm_103373.1	chr11	75336700	75336900	-	1	NA	NA	NA	11583	NM_001164223	68275	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0.025000	0.552239	
mm_97156.1	chr11	75463981	75464181	+	1	NA	NA	NA	365	NR_029739	387141		NR_029739	ENSMUSG00000065529	Mir22	Mirn22|mmu-mir-22	microRNA 22	ncRNA	0.000000	0.447761	
mm_161480.1	chr15	82340827	82341027	+	1	NA	NA	NA	-252	NM_177391	338368	Mm.444916	NM_177391	ENSMUSG00000049687	Fam109b	C920005C14Rik|IPIP27B|Ses2	family with sequence similarity 109, member B	protein-coding	0.055000	0.582090	
mm_154590.1	chrX	7579607	7579807	+	1	NA	NA	NA	31	NM_054039	20371	Mm.182291	NM_054039	ENSMUSG00000039521	Foxp3	JM2|scurfin|sf	forkhead box P3	protein-coding	0.030000	0.542289	-66(CGGTATAAAAGC,-,0.00)
mm_102415.1	chr11	59202089	59202289	-	1	NA	NA	NA	242	NR_037964	72203	Mm.339566	NR_037964		2610507I01Rik	5033414D05Rik	RIKEN cDNA 2610507I01 gene	ncRNA	0.050000	0.572139	
mm_22918.1	chr3	31094869	31095069	+	1	NA	NA	NA	-89	NM_011386	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.170000	0.805970	
mm_124121.1	chr14	79535577	79535777	-	1	NA	NA	NA	20003	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.020000	0.427861	18(CTTTTAAGAGTG,+,0.00)
mm_102010.1	chr11	51605529	51605729	-	1	NA	NA	NA	1252	NM_001048061	15384	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.005000	0.422886	
mm_18900.1	chr2	76715672	76715872	-	1	NA	NA	NA	40457	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.035000	0.497512	
mm_87807.1	chr10	60301625	60301825	+	1	NA	NA	NA	17264	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.497512	
mm_120988.1	chr14	79180582	79180782	+	1	NA	NA	NA	66685	NM_001033215	105590	Mm.486536	NM_001033215	ENSMUSG00000071262	Zfp957	AU017455	zinc finger protein 957	protein-coding	0.015000	0.452736	
mm_114584.1	chr13	75707482	75707682	+	1	NA	NA	NA	98	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.120000	0.726368	
mm_78591.1	chr9	37385813	37386013	+	1	NA	NA	NA	-15984	NM_028783	74144	Mm.485070	NM_028783	ENSMUSG00000032125	Robo4	1200012D01Rik|AI593217	roundabout guidance receptor 4	protein-coding	0.020000	0.522388	
mm_86171.1	chr9	119156922	119157122	-	1	NA	NA	NA	71	NM_146230	235674	Mm.379402	NM_146230	ENSMUSG00000010651	Acaa1b	-	acetyl-Coenzyme A acyltransferase 1B	protein-coding	0.075000	0.621891	
mm_43531.1	chr5	137293449	137293649	+	1	NA	NA	NA	-231	NR_106196	102466887		NR_106196	ENSMUSG00000099145	Mir8116	Gm27485|mmu-mir-8116	microRNA 8116	ncRNA	0.040000	0.636816	
mm_172938.1	chr9	78809469	78809669	-	1	NA	NA	NA	194023	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.020000	0.517413	-30(GCCTATATAAGC,-,0.00)
mm_93807.1	chr10	120979218	120979418	-	1	NA	NA	NA	12	NM_001081193	380664	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	0.120000	0.656716	
mm_13199.1	chr2	93453336	93453536	+	1	NA	NA	NA	617	NR_040533	100038525	Mm.440596	NR_040532	ENSMUSG00000075025	Gm10804	ENSMUSG00000075025	predicted gene 10804	ncRNA	0.025000	0.447761	
mm_96260.1	chr11	62605653	62605853	+	1	NA	NA	NA	1223	NR_028541	100217444		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	0.005000	0.562189	17(CTCCCTATAGGG,-,0.00),19(CCCTATAGGGTC,+,0.00)
mm_171166.1	chr3	26229616	26229816	+	1	NA	NA	NA	-76409	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.437811	
mm_74631.1	chr8	13192212	13192412	-	1	NA	NA	NA	-3214	NR_035494	100316713		NR_035494	ENSMUSG00000088054	Mir1968	mir-1968|mmu-mir-1968	microRNA 1968	ncRNA	0.030000	0.532338	
mm_127718.1	chr15	103034610	103034810	+	1	NA	NA	NA	315	NM_013553	15423	Mm.1351	NM_013553	ENSMUSG00000075394	Hoxc4	Hox-3.5	homeobox C4	protein-coding	0.050000	0.422886	
mm_42539.1	chr5	115908615	115908815	+	1	NA	NA	NA	63059	NM_007708	12704	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0.035000	0.532338	
mm_161883.1	chr18	37638611	37638811	-	1	NA	NA	NA	12	NM_001159275	83885	Mm.193029	NM_001159275	ENSMUSG00000050304	Slc25a2	Ornt2	solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2	protein-coding	0.055000	0.592040	
mm_109328.1	chr12	109564803	109565003	+	1	NA	NA	NA	1211	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.010000	0.422886	
mm_149106.1	chr19	8951978	8952178	+	1	NA	NA	NA	-1754	NM_197993	70044	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	0.015000	0.497512	
mm_9530.1	chr1	173802621	173802821	-	1	NA	NA	NA	-35802	NM_008329	15951	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.005000	0.437811	
mm_42744.1	chr5	120753671	120753871	+	1	NA	NA	NA	-3923	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.005000	0.437811	
mm_161282.1	chr14	21751394	21751594	+	1	NA	NA	NA	963	NM_026283	67630	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	0.050000	0.472637	-93(CCCTTTAAGAAG,-,0.00),-92(CCTTTAAGAAGC,+,0.00)
mm_40905.1	chr5	75203624	75203824	+	1	NA	NA	NA	26893	NR_105992	102465620		NR_105992	ENSMUSG00000099060	Mir7025	Gm27860|mmu-mir-7025	microRNA 7025	ncRNA	0.005000	0.373134	
mm_144829.1	chr18	36348846	36349046	+	1	NA	NA	NA	322	NM_001081365	66060	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.105000	0.766169	
mm_57253.1	chr6	123283458	123283658	-	1	NA	NA	NA	6313	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.412935	
mm_140712.1	chr17	15041363	15041563	-	1	NA	NA	NA	96	NM_001123368	100041586	Mm.440445	NM_001123368	ENSMUSG00000079710	Gm3417	-	predicted gene 3417	protein-coding	0.135000	0.716418	
mm_136183.1	chr16	88924169	88924369	-	1	NA	NA	NA	7995	NM_133359	170939	Mm.188445	NM_133359	ENSMUSG00000057174	Krtap19-9b	Krtap16-10b|Krtap16.10L	keratin associated protein 19-9B	protein-coding	0.005000	0.467662	
mm_169165.1	chr13	65503476	65503676	+	1	NA	NA	NA	224722	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.000000	0.412935	
mm_113924.1	chr13	49582662	49582862	+	1	NA	NA	NA	15	NM_012050	27047	Mm.390589	NM_012050	ENSMUSG00000048368	Omd	OSAD|SLRR2C	osteomodulin	protein-coding	0.005000	0.353234	
mm_47624.1	chr5	125277645	125277845	-	1	NA	NA	NA	63349	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.030000	0.616915	
mm_33816.1	chr4	135337689	135337889	+	1	NA	NA	NA	15425	NM_016799	51796	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.035000	0.517413	
mm_100890.1	chr11	6065580	6065780	-	1	NA	NA	NA	68	NM_001174054	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	0.210000	0.830846	
mm_166473.1	chr5	142909887	142910087	+	1	NA	NA	NA	-3233	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.020000	0.542289	
mm_4715.1	chr1	180952581	180952781	+	1	NA	NA	NA	10163	NM_144794	208795	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.000000	0.462687	
mm_18652.1	chr2	69737728	69737928	-	1	NA	NA	NA	14740	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.030000	0.348259	
mm_25609.1	chr3	117786563	117786763	+	1	NA	NA	NA	82273	NM_001190156	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.020000	0.412935	
mm_139057.1	chr17	46383710	46383910	+	1	NA	NA	NA	44	NM_021346	57908	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	0.185000	0.796020	
mm_95930.1	chr11	58378944	58379144	+	1	NA	NA	NA	12	NM_001083884	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.005000	0.562189	-56(GGCTTTTAGAGC,-,0.00),-55(GCTTTTAGAGCA,+,0.00),-33(TACTATATAAGG,-,0.00),-31(CTATATAAGGCC,+,0.00)
mm_88856.1	chr10	80930672	80930872	+	1	NA	NA	NA	681	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.035000	0.512438	
mm_8124.1	chr1	136135089	136135289	-	1	NA	NA	NA	3788	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.005000	0.492537	
mm_160621.1	chr9	96731549	96731749	-	1	NA	NA	NA	26	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.025000	0.477612	
mm_4005.1	chr1	164796641	164796841	+	1	NA	NA	NA	9	NM_019759	56429	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	0.020000	0.552239	
mm_172023.1	chr6	116926576	116926776	+	1	NA	NA	NA	-209918	NM_178768	319776	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.025000	0.507463	
mm_12277.1	chr2	68999885	69000085	+	1	NA	NA	NA	-135815	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.015000	0.318408	
mm_162236.1	chrX	153118702	153118902	+	1	NA	NA	NA	14	NM_001034894	436240	Mm.373353	NM_001034894	ENSMUSG00000071665	Foxr2	EG436240|Foxn6	forkhead box R2	protein-coding	0.015000	0.567164	
mm_77861.1	chr9	5321204	5321404	+	1	NA	NA	NA	12455	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.010000	0.383085	
mm_145508.1	chr18	60391515	60391715	+	1	NA	NA	NA	15586	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.000000	0.338308	-36(GTTTTTAAACTG,+,0.00)
mm_86458.1	chr10	4353345	4353545	+	1	NA	NA	NA	34663	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.050000	0.487562	
mm_142288.1	chr17	40242282	40242482	-	1	NA	NA	NA	-124	NM_009639	11572	Mm.14138	NM_009639	ENSMUSG00000025433	Crisp3	Aeg2|CRISP-3|CRS3|SGP28	cysteine-rich secretory protein 3	protein-coding	0.000000	0.373134	60(GAGTATAAATAG,-,0.00)
mm_140342.1	chr17	86823666	86823866	+	1	NA	NA	NA	69902	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.030000	0.582090	
mm_44019.1	chr5	147400322	147400522	+	1	NA	NA	NA	67	NM_010229	14255	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	0.100000	0.716418	
mm_54740.1	chr6	41030603	41030803	-	1	NA	NA	NA	4806	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.010000	0.487562	
mm_137056.1	chr17	17931903	17932103	+	1	NA	NA	NA	-38455	NM_008042	14294	Mm.378918	NM_008042	ENSMUSG00000079700	Fpr3	ALX|Fpr-rs1|Fpr-s1|Fprl1|LXA4-R|Lxa4r	formyl peptide receptor 3	protein-coding	0.005000	0.442786	
mm_130727.1	chr15	101217174	101217374	-	1	NA	NA	NA	-3973	NR_045996	105968	Mm.120798	NR_045996		AU021063	-	expressed sequence AU021063	ncRNA	0.010000	0.402985	
mm_101382.1	chr11	23818797	23818997	-	1	NA	NA	NA	-47927	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.005000	0.497512	
mm_154303.1	chr19	61225521	61225721	-	1	NA	NA	NA	2797	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.095000	0.686567	
mm_11812.1	chr2	43972994	43973194	+	1	NA	NA	NA	92230	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.000000	0.487562	
mm_96618.1	chr11	69103274	69103474	+	1	NA	NA	NA	3216	NM_001159367	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.020000	0.582090	-38(CCTTTACAACCC,+,0.00)
mm_44405.1	chr5	17847718	17847918	-	1	NA	NA	NA	1974	NM_001159557	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.417910	
mm_145250.1	chr18	52465593	52465793	+	1	NA	NA	NA	0	NM_026040	67222	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	0.110000	0.656716	
mm_44195.1	chr5	3596460	3596660	-	1	NA	NA	NA	-13	NM_172991	269623	Mm.38014	NM_172991	ENSMUSG00000040302	Rbm48	AW548102|C030048B08Rik	RNA binding motif protein 48	protein-coding	0.095000	0.681592	
mm_635.1	chr1	40380477	40380677	+	1	NA	NA	NA	-48993	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.010000	0.457711	
mm_657.1	chr1	40434430	40434630	+	1	NA	NA	NA	4960	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.010000	0.393035	
mm_27676.1	chr3	65925829	65926029	-	1	NA	NA	NA	32296	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.005000	0.373134	
mm_8811.1	chr1	161896072	161896272	-	1	NA	NA	NA	-19511	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.005000	0.412935	
mm_117723.1	chr13	95525086	95525286	-	1	NA	NA	NA	54	NM_007974	14063	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	0.070000	0.636816	
mm_66296.1	chr7	38023396	38023596	-	1	NA	NA	NA	-3944	NM_011274	19777	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	0.020000	0.477612	
mm_7806.1	chr1	131526635	131526835	-	1	NA	NA	NA	626	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.065000	0.631841	
mm_123133.1	chr14	56366728	56366928	-	1	NA	NA	NA	1760	NM_138652	192113	Mm.273271	NM_138652	ENSMUSG00000022229	Atp12a	Atp1al1|HKalpha2|cHKA	ATPase, H+/K+ transporting, nongastric, alpha polypeptide	protein-coding	0.040000	0.542289	
mm_144646.1	chr18	33794792	33794992	+	1	NA	NA	NA	0	NR_038152	69749	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.100000	0.676617	-34(CCGTAGAAAAGC,-,0.00)
mm_147983.1	chr18	67601318	67601518	-	1	NA	NA	NA	39918	NM_001081073	225659	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0.005000	0.283582	
mm_168556.1	chr11	6559433	6559633	-	1	NA	NA	NA	-650	NM_001190344	216527	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0.015000	0.502488	
mm_127990.1	chr15	12549959	12550159	-	1	NA	NA	NA	42497	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.045000	0.537313	
mm_20343.1	chr2	127705400	127705600	-	1	NA	NA	NA	24397	NM_145532	228576	Mm.133036	NM_145532	ENSMUSG00000027377	Mall	BC012256|BENE	mal, T cell differentiation protein-like	protein-coding	0.020000	0.472637	
mm_98944.1	chr11	98412282	98412482	+	1	NA	NA	NA	-102	NM_001003817	13866	Mm.290822	NM_001003817	ENSMUSG00000062312	Erbb2	Erbb-2|HER-2|HER2|Neu|c-erbB2|c-neu|l11Jus8|mKIAA3023	erb-b2 receptor tyrosine kinase 2	protein-coding	0.080000	0.701493	
mm_40423.1	chr5	53466024	53466224	+	1	NA	NA	NA	-89655	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.020000	0.512438	
mm_101568.1	chr11	34207989	34208189	-	1	NA	NA	NA	0	NM_023907	14233	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	0.040000	0.691542	
mm_28812.1	chr3	96259658	96259858	-	1	NA	NA	NA	3559	NM_033596	97122	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0.010000	0.492537	
mm_24462.1	chr3	90654005	90654205	+	1	NA	NA	NA	-197	NM_199422	381493	Mm.291525	NM_199422	ENSMUSG00000063767	S100a7a	AY465109|Gm1020|S100A7L1|S100A7f|S100a15|S100a15a|S100a17l1	S100 calcium binding protein A7A	protein-coding	0.010000	0.507463	
mm_4844.1	chr1	186966998	186967198	+	1	NA	NA	NA	-318	NM_033077	110957	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding	0.050000	0.621891	
mm_69907.1	chr7	141639904	141640104	-	1	NA	NA	NA	15315	NM_001330001	353328	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0.010000	0.417910	
mm_32832.1	chr4	117610726	117610926	+	1	NA	NA	NA	60461	NM_080469	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.005000	0.363184	
mm_11198.1	chr2	29125107	29125307	+	1	NA	NA	NA	215	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.155000	0.751244	
mm_149159.1	chr19	9017646	9017846	+	1	NA	NA	NA	-158	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.015000	0.447761	
mm_65838.1	chr7	29232403	29232603	-	1	NA	NA	NA	19	NM_001033525	52150	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	0.140000	0.746269	
mm_37800.1	chr4	130531563	130531763	-	1	NA	NA	NA	42373	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.025000	0.542289	
mm_109303.1	chr12	109560543	109560743	+	1	NA	NA	NA	-3049	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.015000	0.462687	
mm_73287.1	chr8	104926164	104926364	+	1	NA	NA	NA	4	NM_172759	234673	Mm.441134	NM_172759	ENSMUSG00000031886	Ces2e	9030624L02Rik|Ces5	carboxylesterase 2E	protein-coding	0.010000	0.452736	
mm_449.1	chr1	36063207	36063407	+	1	NA	NA	NA	-5093	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.005000	0.522388	
mm_161451.1	chr15	74955019	74955219	+	1	NA	NA	NA	13	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.025000	0.562189	
mm_150933.1	chr19	46305763	46305963	+	1	NA	NA	NA	-67	NM_001177370	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.065000	0.646766	
mm_110127.1	chr12	26444475	26444675	-	1	NA	NA	NA	11877	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.010000	0.412935	
mm_131551.1	chr16	17898561	17898761	+	1	NA	NA	NA	24	NM_009436	22115	Mm.310201	NM_009436	ENSMUSG00000045521	Tssk2	DGS-G|SPOGA2|Stk22b|Tsk2	testis-specific serine kinase 2	protein-coding	0.055000	0.641791	
mm_42675.1	chr5	119680177	119680377	+	1	NA	NA	NA	9044	NM_011535	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.025000	0.542289	
mm_37483.1	chr4	123572849	123573049	-	1	NA	NA	NA	-43471	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.015000	0.522388	
mm_3557.1	chr1	150423699	150423899	+	1	NA	NA	NA	-30744	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.020000	0.388060	
mm_98770.1	chr11	96693509	96693709	+	1	NA	NA	NA	83946	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.045000	0.512438	
mm_118676.1	chr14	22063962	22064162	+	1	NA	NA	NA	44350	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.010000	0.442786	
mm_131096.1	chr16	4927644	4927844	+	1	NA	NA	NA	-11367	NM_001316715	66911	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0.020000	0.557214	25(CCCTCTATGAGG,-,0.00)
mm_41453.1	chr5	90905470	90905670	+	1	NA	NA	NA	1671	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.005000	0.402985	
mm_22329.1	chr2	180692764	180692964	-	1	NA	NA	NA	-816	NR_111965	23856	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.005000	0.462687	-87(AGGTCTAAAAAG,-,0.00),72(TGGTTTAAAAGC,-,0.00)
mm_21470.1	chr2	160982624	160982824	-	1	NA	NA	NA	-70385	NM_182840	280635	Mm.330747	NM_182840	ENSMUSG00000050700	Emilin3	1110013O17Rik|EMILIN-3|EMILIN-5|EMILIN-T|Emilin5	elastin microfibril interfacer 3	protein-coding	0.015000	0.457711	
mm_17956.1	chr2	37359182	37359382	-	1	NA	NA	NA	50	NM_026176	67466	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	0.090000	0.567164	
mm_2837.1	chr1	131527891	131528091	+	1	NA	NA	NA	88	NM_175382	108900	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	0.075000	0.577114	
mm_47442.1	chr5	123310255	123310455	-	1	NA	NA	NA	-34093	NM_029850	77045	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0.010000	0.422886	-35(GGCTTTAAGAGG,-,0.00),-34(GCTTTAAGAGGA,+,0.00),46(TTCTATATATGC,-,0.00)
mm_69689.1	chr7	139991283	139991483	-	1	NA	NA	NA	1179	NM_007403	11501	Mm.15969	NM_007403	ENSMUSG00000025473	Adam8	ADAM 8|CD156|CD156a|E430039A18Rik|MS2	a disintegrin and metallopeptidase domain 8	protein-coding	0.025000	0.587065	73(GTCTTTAAAAGG,-,0.00),74(TCTTTAAAAGGA,+,0.00),75(CTTTAAAAGGAC,+,0.00)
mm_66679.1	chr7	45808128	45808328	-	1	NA	NA	NA	6088	NM_011181	19158	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0.030000	0.606965	
mm_162363.1	chr1	65048753	65048953	+	1	NA	NA	NA	2310	NM_007777	12968	Mm.258170	NM_007777	ENSMUSG00000070870	Cryge	Cryg-2|Cryg-6|DGcry-2|Elo	crystallin, gamma E	protein-coding	0.030000	0.552239	
mm_80937.1	chr9	102716598	102716798	+	1	NA	NA	NA	-1106	NM_019764	56332	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0.025000	0.557214	
mm_33017.1	chr4	121015986	121016186	+	1	NA	NA	NA	1161	NM_133716	69780	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	0.025000	0.502488	
mm_165059.1	chr19	41981693	41981893	+	1	NA	NA	NA	30	NM_145500	226122	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0.110000	0.741294	
mm_40301.1	chr5	43672215	43672415	+	1	NA	NA	NA	9936	NM_172274	231214	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	0.015000	0.512438	
mm_164230.1	chr15	89336758	89336958	+	1	NA	NA	NA	2385	NM_019977	56727	Mm.158200	NM_019977	ENSMUSG00000022613	Miox	0610009I10Rik|AI314022|Aldrl6|C85427|RSOR	myo-inositol oxygenase	protein-coding	0.015000	0.582090	
mm_29665.1	chr3	122619353	122619553	-	1	NA	NA	NA	261	NM_001114665	214459	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	0.140000	0.791045	
mm_131859.1	chr16	23079864	23080064	+	1	NA	NA	NA	21664	NM_001102412	16644	Mm.2160	NM_023125	ENSMUSG00000022875	Kng1	Kng	kininogen 1	protein-coding	0.005000	0.467662	
mm_1107.1	chr1	59763864	59764064	+	1	NA	NA	NA	-315	NM_007561	12168	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0.155000	0.756219	
mm_77522.1	chr8	122939490	122939690	-	1	NA	NA	NA	91216	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.000000	0.373134	
mm_76534.1	chr8	87959468	87959668	-	1	NA	NA	NA	27	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	0.090000	0.701493	
mm_157925.1	chrX	79635453	79635653	-	1	NA	NA	NA	29	NM_001113734	71967	Mm.379207	NM_028025	ENSMUSG00000046942	Mageb16	2410003J06Rik	melanoma antigen family B, 16	protein-coding	0.045000	0.472637	
mm_71996.1	chr8	70618054	70618254	+	1	NA	NA	NA	1310	NM_153074	211228	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0.030000	0.621891	
mm_67910.1	chr7	99706544	99706744	-	1	NA	NA	NA	198	NM_001252530	101488	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0.005000	0.562189	
mm_156373.1	chrX	139665326	139665526	+	1	NA	NA	NA	-19570	NM_001081499	245638	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	0.005000	0.442786	
mm_165779.1	chr3	130420529	130420729	+	1	NA	NA	NA	-196819	NM_001163587	71760	Mm.29125	NM_027907	ENSMUSG00000019232	Etnppl	1300019H02Rik|AI195447|Agxt2l1	ethanolamine phosphate phospholyase	protein-coding	0.015000	0.452736	
mm_161215.1	chr13	66905314	66905514	+	1	NA	NA	NA	-1	NM_001177750	100038538	Mm.405005	NM_001177750	ENSMUSG00000074826	Gm10767	ENSMUSG00000074826	predicted gene 10767	protein-coding	0.035000	0.537313	
mm_33667.1	chr4	133184958	133185158	+	1	NA	NA	NA	-10597	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.025000	0.522388	
mm_105047.1	chr11	100619495	100619695	-	1	NA	NA	NA	573	NM_019795	56354	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0.115000	0.661692	
mm_62585.1	chr7	105554407	105554607	+	1	NA	NA	NA	147	NM_011421	20597	Mm.4628	NM_011421	ENSMUSG00000037049	Smpd1	A-SMase|ASM|Zn-SMase|aSMase	sphingomyelin phosphodiesterase 1, acid lysosomal	protein-coding	0.040000	0.641791	
mm_53935.1	chr6	4754146	4754346	-	1	NA	NA	NA	6940	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.045000	0.636816	
mm_160431.1	chr8	90932305	90932505	+	1	NA	NA	NA	156	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.035000	0.442786	
mm_65701.1	chr7	28377175	28377375	-	1	NA	NA	NA	1953	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.005000	0.482587	
mm_69634.1	chr7	137564513	137564713	-	1	NA	NA	NA	126939	NR_033611	620016	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	OTTMUSG00000007920	glutaredoxin 3 pseudogene	pseudo	0.020000	0.462687	
mm_93770.1	chr10	120362568	120362768	-	1	NA	NA	NA	-26855	NR_040626	320626	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	0.000000	0.343284	
mm_104999.1	chr11	100356041	100356241	-	1	NA	NA	NA	0	NM_177981	15114	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.080000	0.626866	
mm_79928.1	chr9	65630715	65630915	+	1	NA	NA	NA	233	NM_028030	71973	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	0.115000	0.736318	
mm_1980.1	chr1	86587041	86587241	+	1	NA	NA	NA	41	NM_172974	26895	Mm.12973	NM_172974	ENSMUSG00000026240	Cops7b	D1Wsu66e|E130114M23	COP9 signalosome subunit 7B	protein-coding	0.080000	0.631841	
mm_112490.1	chr13	6548083	6548283	+	1	NA	NA	NA	26	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.095000	0.661692	
mm_77725.1	chr8	126847686	126847886	-	1	NA	NA	NA	98135	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.025000	0.587065	
mm_107879.1	chr12	69986351	69986551	+	1	NA	NA	NA	551	NM_022028	64010	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0.080000	0.572139	
mm_66499.1	chr7	45061840	45062040	-	1	NA	NA	NA	-288	NM_022999	65116	Mm.379098	NM_022999	ENSMUSG00000007837	Prrg2	1600014G02Rik|2510041M06Rik|N4WBP1	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	protein-coding	0.020000	0.477612	
mm_168370.1	chr1	119054675	119054875	-	1	NA	NA	NA	-1156	NM_001081125	14633	Mm.273292	NM_001081125	ENSMUSG00000048402	Gli2	-	GLI-Kruppel family member GLI2	protein-coding	0.015000	0.512438	-94(CACCTTTAAAAG,-,0.00),-93(ACCTTTAAAAGG,-,0.00),-92(CCTTTAAAAGGA,+,0.00)
mm_161592.1	chr16	35658221	35658421	+	1	NA	NA	NA	111035	NM_153550	224132	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0.035000	0.572139	
mm_34135.1	chr4	139291006	139291206	+	1	NA	NA	NA	19594	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.045000	0.492537	
mm_78420.1	chr9	31030711	31030911	+	1	NA	NA	NA	167	NM_172765	235132	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.110000	0.776119	
mm_166263.1	chr5	87786544	87786744	-	1	NA	NA	NA	12194	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.005000	0.383085	
mm_74334.1	chr8	127063997	127064197	+	1	NA	NA	NA	41	NM_001309391	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.150000	0.786070	
mm_151109.1	chr19	47864221	47864421	+	1	NA	NA	NA	-1224	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.020000	0.552239	
mm_61643.1	chr7	80370239	80370439	+	1	NA	NA	NA	1036	NM_172903	140481	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	0.005000	0.507463	
mm_2670.1	chr1	127205276	127205476	+	1	NA	NA	NA	390	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.045000	0.616915	
mm_71866.1	chr8	69103574	69103774	+	1	NA	NA	NA	-14452	NM_153054	110877	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	0.055000	0.547264	
mm_141276.1	chr17	27820453	27820653	-	1	NA	NA	NA	-11	NM_001271511	224647	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0.155000	0.810945	
mm_40651.1	chr5	65107537	65107737	+	1	NA	NA	NA	69	NM_001347355	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.135000	0.771144	
mm_123499.1	chr14	66213480	66213680	-	1	NA	NA	NA	-28	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.015000	0.547264	
mm_152016.1	chr19	5991503	5991703	-	1	NA	NA	NA	-5460	NM_198650	381203	Mm.329638	NM_198650	ENSMUSG00000037451	Slc22a20	Gm963|OAT1-L|mOAT6	solute carrier family 22 (organic anion transporter), member 20	protein-coding	0.025000	0.587065	
mm_135461.1	chr16	45742818	45743018	-	1	NA	NA	NA	37	NM_001272070	213012	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	0.115000	0.741294	
mm_60376.1	chr7	44467961	44468161	+	1	NA	NA	NA	81	NM_001205070	66124	Mm.358691	NM_025368	ENSMUSG00000038695	Josd2	1110007C05Rik	Josephin domain containing 2	protein-coding	0.115000	0.641791	
mm_113664.1	chr13	42681986	42682186	+	1	NA	NA	NA	1287	NM_001302635	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.025000	0.497512	
mm_21838.1	chr2	165793249	165793449	-	1	NA	NA	NA	64824	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.010000	0.527363	
mm_171649.1	chr4	38919563	38919763	+	1	NA	NA	NA	-530630	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0.030000	0.522388	-18(GCCTATAAAAGC,-,0.00)
mm_14801.1	chr2	145886549	145886749	+	1	NA	NA	NA	-16592	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.020000	0.398010	
mm_45235.1	chr5	53594249	53594449	-	1	NA	NA	NA	3863	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.015000	0.442786	
mm_65404.1	chr7	25229468	25229668	-	1	NA	NA	NA	845	NR_046001	77124	Mm.294664	NM_178400	ENSMUSG00000090330	9130221H12Rik	AU016887	RIKEN cDNA 9130221H12 gene	ncRNA	0.000000	0.507463	
mm_124030.1	chr14	77024383	77024583	-	1	NA	NA	NA	12134	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding	0.010000	0.472637	-3(GCTTTAATACTT,+,0.00)
mm_133550.1	chr16	91372772	91372972	+	1	NA	NA	NA	89	NM_001110498	15976	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.110000	0.731343	
mm_54295.1	chr6	29380331	29380531	-	1	NA	NA	NA	82	NM_007538	12057	Mm.56987	NM_007538	ENSMUSG00000058831	Opn1sw	AW551857|Bcp	opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)	protein-coding	0.020000	0.517413	-77(TCTTTAAAGGAG,+,0.00),-32(GTCTATAAGAGG,-,0.00)
mm_45501.1	chr5	72264517	72264717	-	1	NA	NA	NA	61274	NM_153389	231287	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.030000	0.517413	
mm_44421.1	chr5	19226584	19226784	-	1	NA	NA	NA	-129	NR_102342	70832	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0.105000	0.716418	
mm_137376.1	chr17	25717125	25717325	+	1	NA	NA	NA	53	NM_022422	64337	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	0.035000	0.611940	
mm_13233.1	chr2	97630732	97630932	+	1	NA	NA	NA	163175	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.025000	0.427861	
mm_93528.1	chr10	115315521	115315721	-	1	NA	NA	NA	-30	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.105000	0.701493	35(CGCCATTAGAGG,-,0.00)
mm_133710.1	chr16	93532318	93532518	+	1	NA	NA	NA	71397	NM_145482	224440	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	0.060000	0.542289	-36(TGCTCTAAAGGG,-,0.00)
mm_82201.1	chr9	124101852	124102052	+	1	NA	NA	NA	-231	NM_009915	12772	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.010000	0.378109	
mm_154156.1	chr19	58455500	58455700	-	1	NA	NA	NA	-202	NM_010279	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.060000	0.547264	
mm_169819.1	chr16	21409221	21409421	-	1	NA	NA	NA	-13797	NM_001285893	209018	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.005000	0.338308	
mm_37492.1	chr4	123613707	123613907	-	1	NA	NA	NA	-2613	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.020000	0.477612	
mm_84796.1	chr9	77229334	77229534	-	1	NA	NA	NA	118436	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.015000	0.388060	
mm_8855.1	chr1	162713251	162713451	-	1	NA	NA	NA	27205	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.010000	0.383085	
mm_43903.1	chr5	144255133	144255333	+	1	NA	NA	NA	8	NM_018772	55950	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.155000	0.781095	-94(TCTTTAAGACGC,+,0.00)
mm_140568.1	chr17	8565599	8565799	-	1	NA	NA	NA	38898	NM_001290707	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.015000	0.373134	
mm_71592.1	chr8	54954924	54955124	+	1	NA	NA	NA	296	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.015000	0.442786	
mm_170810.1	chr2	176121607	176121807	-	1	NA	NA	NA	-104858	NM_001305137	100504263	Mm.379980	NM_001305136	ENSMUSG00000078894	2210418O10Rik	Gm6182	predicted gene 2210418O10Rik	protein-coding	0.010000	0.482587	
mm_145438.1	chr18	59062284	59062484	+	1	NA	NA	NA	3	NR_033765	225583	Mm.209711	NM_173759	ENSMUSG00000050875	A730017C20Rik	-	RIKEN cDNA A730017C20 gene	protein-coding	0.025000	0.482587	
mm_88824.1	chr10	80803950	80804150	+	1	NA	NA	NA	-1198	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.020000	0.626866	
mm_167327.1	chr8	70277980	70278180	+	1	NA	NA	NA	-4919	NM_011984	26558	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	0.025000	0.557214	
mm_93853.1	chr10	122047385	122047585	-	1	NA	NA	NA	-170	NM_001081037	117600	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.155000	0.791045	
mm_115534.1	chr13	6598280	6598480	-	1	NA	NA	NA	50223	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.025000	0.308458	
mm_48920.1	chr6	4004158	4004358	+	1	NA	NA	NA	271	NM_025331	66066	Mm.25547	NM_025331	ENSMUSG00000032766	Gng11	0610037B21Rik	guanine nucleotide binding protein (G protein), gamma 11	protein-coding	0.070000	0.646766	
mm_161.1	chr1	12718613	12718813	+	1	NA	NA	NA	168	NM_172294	240725	Mm.45563	NM_172294	ENSMUSG00000016918	Sulf1	AI467640|AW121680|mKIAA1077	sulfatase 1	protein-coding	0.020000	0.527363	
mm_92585.1	chr10	80039559	80039759	-	1	NA	NA	NA	0	NM_025554	66420	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0.100000	0.646766	
mm_15253.1	chr2	154859601	154859801	+	1	NA	NA	NA	33205	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.010000	0.522388	
mm_139440.1	chr17	54138688	54138888	+	1	NA	NA	NA	-148157	NM_018751	20888	Mm.10108	NM_018751	ENSMUSG00000023943	Sult1c1	(PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST	sulfotransferase family, cytosolic, 1C, member 1	protein-coding	0.000000	0.477612	
mm_163600.1	chr13	44869986	44870186	-	1	NA	NA	NA	132010	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.070000	0.547264	
mm_31947.1	chr4	86711045	86711245	+	1	NA	NA	NA	-37410	NM_184088	329877	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	0.015000	0.422886	
mm_132981.1	chr16	52143987	52144187	+	1	NA	NA	NA	112538	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.010000	0.363184	
mm_6031.1	chr1	59548682	59548882	-	1	NA	NA	NA	32518	NM_001013771	381260	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0.015000	0.472637	
mm_72048.1	chr8	71337324	71337524	+	1	NA	NA	NA	-29424	NM_001145780	67023	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.000000	0.482587	
mm_56047.1	chr6	86737639	86737839	-	1	NA	NA	NA	-4361	NM_011818	23885	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	0.025000	0.422886	
mm_50814.1	chr6	54329741	54329941	+	1	NA	NA	NA	2829	NM_030024	78004	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	0.005000	0.373134	
mm_13655.1	chr2	114055055	114055255	+	1	NA	NA	NA	759	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.020000	0.472637	
mm_168245.1	chr10	81986305	81986505	-	1	NA	NA	NA	-55893	NM_001346707	100040944		NM_001346707		Gm3055	-	predicted gene 3055	protein-coding	0.040000	0.427861	
mm_5376.1	chr1	30948577	30948777	-	1	NA	NA	NA	1033	NR_002688	433406	Mm.389003	NR_002688		Gm13363	OTTMUSG00000011595	predicted gene 13363	pseudo	0.015000	0.388060	
mm_132684.1	chr16	43072069	43072269	+	1	NA	NA	NA	116589	NR_002445	170658	Mm.375824	NR_002445		BC002163	-	NADH dehydrogenase Fe-S protein 5 pseudogene	pseudo	0.010000	0.457711	
mm_100534.1	chr11	120617210	120617410	+	1	NA	NA	NA	580	NM_024229	68671	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	0.015000	0.482587	
mm_63157.1	chr7	123421416	123421616	+	1	NA	NA	NA	-40778	NM_007474	11833	Mm.273175	NM_007474	ENSMUSG00000030762	Aqp8	AI255744|AQP-8	aquaporin 8	protein-coding	0.040000	0.532338	
mm_61512.1	chr7	78885535	78885735	+	1	NA	NA	NA	-2642	NR_029826	723884		NR_029826	ENSMUSG00000065609	Mir7-2	Mir7a2|Mirn7-2|mir-7a-2|mir-7a2|mmu-mir-7-2|mmu-mir-7a2	microRNA 7-2	ncRNA	0.010000	0.462687	
mm_14896.1	chr2	149830698	149830898	+	1	NA	NA	NA	15	NM_001085521	433485	Mm.330649	NM_001085521	ENSMUSG00000074736	Syndig1	AW123113|DSPC2|Gm14134|H2C20orf39|OTTMUSG00000015750|Tmem90b	synapse differentiation inducing 1	protein-coding	0.120000	0.751244	
mm_36027.1	chr4	57119911	57120111	-	1	NA	NA	NA	23145	NM_019427	54357	Mm.28217	NM_019427	ENSMUSG00000028434	Epb41l4b	6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2	erythrocyte membrane protein band 4.1 like 4b	protein-coding	0.030000	0.507463	
mm_145737.1	chr18	64265130	64265330	+	1	NA	NA	NA	10871	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.090000	0.716418	
mm_3298.1	chr1	136696106	136696306	+	1	NA	NA	NA	-5	NR_037986	100503474	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0.035000	0.547264	
mm_857.1	chr1	52127638	52127838	+	1	NA	NA	NA	8116	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.015000	0.432836	
mm_115827.1	chr13	21286383	21286583	-	1	NA	NA	NA	6203	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.005000	0.407960	
mm_116753.1	chr13	52507535	52507735	-	1	NA	NA	NA	23201	NM_001024474	68203	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0.040000	0.577114	
mm_52948.1	chr6	122952721	122952921	+	1	NA	NA	NA	177	NM_153197	73149	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.015000	0.407960	
mm_116225.1	chr13	32963957	32964157	-	1	NA	NA	NA	-1456	NM_011454	20708	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	0.025000	0.427861	10(CCTCATAAGGAC,+,0.00)
mm_63268.1	chr7	126759685	126759885	+	1	NA	NA	NA	159	NM_011952	26417	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.075000	0.701493	
mm_56295.1	chr6	91515784	91515984	-	1	NA	NA	NA	4	NM_009531	22591	Mm.2806	NM_009531	ENSMUSG00000030094	Xpc	-	xeroderma pigmentosum, complementation group C	protein-coding	0.115000	0.696517	
mm_17216.1	chr2	25493786	25493986	-	1	NA	NA	NA	25	NM_029958	77701	Mm.99123	NM_029958	ENSMUSG00000026943	Lcn12	9230102M18Rik	lipocalin 12	protein-coding	0.015000	0.606965	
mm_94209.1	chr11	3105573	3105773	+	1	NA	NA	NA	-18348	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.040000	0.467662	
mm_44941.1	chr5	36509276	36509476	-	1	NA	NA	NA	21247	NM_001113364	100855	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.005000	0.368159	
mm_137705.1	chr17	29098522	29098722	+	1	NA	NA	NA	4853	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.070000	0.666667	
mm_83898.1	chr9	56139285	56139485	-	1	NA	NA	NA	21685	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.005000	0.283582	
mm_61499.1	chr7	75848276	75848476	+	1	NA	NA	NA	38	NM_029652	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.135000	0.711443	
mm_54117.1	chr6	18030298	18030498	-	1	NA	NA	NA	47	NM_023653	22413	Mm.33653	NM_023653	ENSMUSG00000010797	Wnt2	2610510E18Rik|Int1l1|Irp|Mirp|Wnt-2|Wnt2a	wingless-type MMTV integration site family, member 2	protein-coding	0.120000	0.676617	
mm_171503.1	chr4	146270240	146270440	+	1	NA	NA	NA	-45	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.040000	0.502488	
mm_144602.1	chr18	32395831	32396031	+	1	NA	NA	NA	-17647	NR_045403	402767	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.005000	0.502488	
mm_167424.1	chr8	111689226	111689426	+	1	NA	NA	NA	348	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.025000	0.577114	
mm_95844.1	chr11	57518590	57518790	+	1	NA	NA	NA	25	NM_145426	216760	Mm.30501	NM_145426	ENSMUSG00000020522	Mfap3	2610509F16Rik|2700079M14Rik|AW536327	microfibrillar-associated protein 3	protein-coding	0.095000	0.636816	
mm_107477.1	chr12	37880614	37880814	+	1	NA	NA	NA	9	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	0.025000	0.572139	
mm_173141.1	chrX	21680520	21680720	-	1	NA	NA	NA	-34280	NM_020049	56774	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	0.015000	0.393035	
mm_90689.1	chr10	128940589	128940789	+	1	NA	NA	NA	6876	NM_001330160	16404	Mm.179747	NM_008398	ENSMUSG00000025348	Itga7	[a]7|alpha7	integrin alpha 7	protein-coding	0.030000	0.507463	
mm_66176.1	chr7	34013785	34013985	-	1	NA	NA	NA	57	NM_001276475	233099	Mm.110829	NM_001100464	ENSMUSG00000066584	Scgb2b27	Abpbg27|Abpbg5|Scgb2b5	secretoglobin, family 2B, member 27	protein-coding	0.010000	0.502488	-34(TCGTTTATAAGG,-,0.00)
mm_53382.1	chr6	129514354	129514554	+	1	NA	NA	NA	1897	NM_001081186	330428	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	0.005000	0.368159	
mm_109289.1	chr12	109559207	109559407	+	1	NA	NA	NA	-4385	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.010000	0.482587	
mm_71571.1	chr8	54077409	54077609	+	1	NA	NA	NA	-23	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding	0.100000	0.641791	
mm_126382.1	chr15	80173257	80173457	+	1	NA	NA	NA	-364	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.115000	0.691542	
mm_23241.1	chr3	51221095	51221295	+	1	NA	NA	NA	-3252	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.015000	0.487562	
mm_128385.1	chr15	43078069	43078269	-	1	NA	NA	NA	92649	NM_172815	239405	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.015000	0.358209	
mm_62072.1	chr7	92741574	92741774	+	1	NA	NA	NA	-40	NM_029494	75985	Mm.323004	NM_029494	ENSMUSG00000030643	Rab30	5033421K01Rik|AI323892|Rsb30	RAB30, member RAS oncogene family	protein-coding	0.045000	0.616915	
mm_158433.1	chrX	139997756	139997956	-	1	NA	NA	NA	739	NM_153586	237073	Mm.256670	NM_153586	ENSMUSG00000031433	Rbm41	BB131279|D330023I21Rik	RNA binding motif protein 41	protein-coding	0.015000	0.452736	70(GTTTTTAAAAGG,-,0.00)
mm_155965.1	chrX	106027494	106027694	+	1	NA	NA	NA	370	NM_009726	11977	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	0.015000	0.462687	
mm_13713.1	chr2	117178527	117178727	+	1	NA	NA	NA	-6500	NR_030440	732489		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.010000	0.373134	84(TTTTTTAAAGCA,+,0.00)
mm_99821.1	chr11	108682548	108682748	+	1	NA	NA	NA	30	NM_029586	76380	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0.015000	0.532338	
mm_106545.1	chr11	120579136	120579336	-	1	NA	NA	NA	2384	NM_133796	192662	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.040000	0.572139	
mm_68628.1	chr7	118129476	118129676	-	1	NA	NA	NA	49	NM_019419	54208	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0.090000	0.611940	-32(GCCTATATAAGC,-,0.00)
mm_169800.1	chr16	17222302	17222502	+	1	NA	NA	NA	-11185	NM_178922	58180	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0.070000	0.592040	
mm_50539.1	chr6	49046056	49046256	+	1	NA	NA	NA	9638	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.005000	0.368159	-54(AACCATAAAAGG,-,0.00)
mm_128609.1	chr15	58823333	58823533	-	1	NA	NA	NA	-6	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.170000	0.781095	
mm_126618.1	chr15	83122137	83122337	+	1	NA	NA	NA	564	NM_029101	74778	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.035000	0.646766	
mm_8693.1	chr1	157256730	157256930	-	1	NA	NA	NA	-148150	NM_001305063	73435	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	0.010000	0.472637	
mm_74761.1	chr8	19600835	19601035	-	1	NA	NA	NA	105838	NM_139220	246080	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	0.005000	0.482587	
mm_36012.1	chr4	56845977	56846177	-	1	NA	NA	NA	19134	NM_018761	54366	Mm.218891	NM_018761	ENSMUSG00000038816	Ctnnal1	ACRP|AI616177|AW545119|C86009|Catnal1	catenin (cadherin associated protein), alpha-like 1	protein-coding	0.020000	0.582090	
mm_53040.1	chr6	124662986	124663186	+	1	NA	NA	NA	-18	NM_145130	14792	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0.110000	0.721393	
mm_60083.1	chr7	34168568	34168768	+	1	NA	NA	NA	-139	NM_016682	50995	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	0.050000	0.592040	
mm_144401.1	chr18	20762588	20762788	+	1	NA	NA	NA	-16284	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.015000	0.527363	
mm_135225.1	chr16	36784737	36784937	-	1	NA	NA	NA	125	NM_001145899	57738	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.000000	0.502488	
mm_139480.1	chr17	56009411	56009611	+	1	NA	NA	NA	310	NM_026530	68047	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	0.115000	0.716418	
mm_73151.1	chr8	94994278	94994478	+	1	NA	NA	NA	9979	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.020000	0.597015	
mm_164376.1	chr16	27302783	27302983	+	1	NA	NA	NA	-4758	NM_198112	239790	Mm.390880	NM_198112	ENSMUSG00000052276	Ostn	Ostc	osteocrin	protein-coding	0.000000	0.218905	
mm_74858.1	chr8	24814022	24814222	-	1	NA	NA	NA	10247	NM_001272058	11499	Mm.143889	NM_007401	ENSMUSG00000031554	Adam5	tMDC II|tMDCII	a disintegrin and metallopeptidase domain 5	protein-coding	0.005000	0.532338	71(TGCTTGAAAAGG,-,0.00)
mm_60991.1	chr7	49246067	49246267	+	1	NA	NA	NA	-22	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.130000	0.746269	
mm_111141.1	chr12	81780955	81781155	-	1	NA	NA	NA	115	NM_177395	338372	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.190000	0.845771	
mm_106068.1	chr11	116138755	116138955	-	1	NA	NA	NA	13	NM_024177	60441	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	0.110000	0.731343	
mm_26866.1	chr3	16006291	16006491	-	1	NA	NA	NA	-59	NM_001081687	381484	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0.005000	0.388060	
mm_143713.1	chr17	80727944	80728144	-	1	NA	NA	NA	-19	NM_001290345	225028	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.180000	0.815920	
mm_78299.1	chr9	22448642	22448842	+	1	NA	NA	NA	19614	NM_018739	55934	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	0.030000	0.502488	
mm_70686.1	chr8	15011184	15011384	+	1	NA	NA	NA	259	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.135000	0.696517	
mm_163841.1	chr14	19417879	19418079	+	1	NA	NA	NA	184608	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.363184	
mm_57757.1	chr6	129230178	129230378	-	1	NA	NA	NA	7767	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.005000	0.417910	
mm_47768.1	chr5	131538579	131538779	-	1	NA	NA	NA	-231157	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.125000	0.736318	
mm_132314.1	chr16	33726580	33726780	+	1	NA	NA	NA	42214	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629|OTTMUSG00000027315	heart development protein with EGF-like domains 1	protein-coding	0.025000	0.527363	
mm_11792.1	chr2	43183808	43184008	+	1	NA	NA	NA	-371417	NM_001289593	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.000000	0.318408	16(CACCATAAAAGG,-,0.00)
mm_10657.1	chr2	20722278	20722478	+	1	NA	NA	NA	202865	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.035000	0.393035	
mm_5478.1	chr1	36699676	36699876	-	1	NA	NA	NA	8289	NM_009942	12859	Mm.180182	NM_009942	ENSMUSG00000061518	Cox5b	-	cytochrome c oxidase subunit Vb	protein-coding	0.010000	0.567164	
mm_165396.1	chr2	134845471	134845671	+	1	NA	NA	NA	59407	NM_001145830	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding	0.005000	0.457711	
mm_9102.1	chr1	169974932	169975132	-	1	NA	NA	NA	5623	NR_040438	67303	Mm.396611	NR_040438	ENSMUSG00000097503	3110045C21Rik	AI838577	RIKEN cDNA 3110045C21 gene	ncRNA	0.005000	0.422886	
mm_65807.1	chr7	28981704	28981904	-	1	NA	NA	NA	84	NM_001285943	73830	Mm.29714	NM_028659	ENSMUSG00000053565	Eif3k	1200009C21Rik|Eif3s12	eukaryotic translation initiation factor 3, subunit K	protein-coding	0.055000	0.567164	
mm_9296.1	chr1	171637230	171637430	-	1	NA	NA	NA	4570	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.030000	0.487562	
mm_135446.1	chr16	45531912	45532112	-	1	NA	NA	NA	-3254	NM_198106	208169	Mm.277437	NM_198106	ENSMUSG00000033210	Slc9c1	Gm610|NHE-10|Slc9a10|sNHE|spermNHE	solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1	protein-coding	0.010000	0.402985	
mm_169991.1	chr17	15498213	15498413	-	1	NA	NA	NA	-37	NM_011185	19170	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	0.090000	0.641791	
mm_141023.1	chr17	25140226	25140426	-	1	NA	NA	NA	3695	NM_001317404	26373	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.010000	0.412935	
mm_98011.1	chr11	84525553	84525753	+	1	NA	NA	NA	-7	NR_038057	78365	Mm.260345	NR_038057	ENSMUSG00000087211	Lhx1os	1500016L03Rik|Lhx1as	LIM homeobox 1, opposite strand	ncRNA	0.115000	0.666667	
mm_153554.1	chr19	42128875	42129075	-	1	NA	NA	NA	18	NM_027106	69534	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0.080000	0.641791	
mm_87085.1	chr10	30010810	30011010	+	1	NA	NA	NA	189630	NM_001109747	66311	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding	0.035000	0.512438	-75(CTGTCTAAAAGA,-,0.00)
mm_66559.1	chr7	45238954	45239154	-	1	NA	NA	NA	61	NM_001290802	12493	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0.020000	0.587065	
mm_151588.1	chr19	3282727	3282927	-	1	NA	NA	NA	-74	NM_001347420	353242	Mm.74084	NM_172252	ENSMUSG00000024829	Mrpl21	BC028768	mitochondrial ribosomal protein L21	protein-coding	0.065000	0.641791	
mm_160968.1	chr11	99804346	99804546	-	1	NA	NA	NA	0	NM_001099312	670472	Mm.425705	NM_001099312	ENSMUSG00000078260	Gm11569	OTTMUSG00000002208	predicted gene 11569	protein-coding	0.000000	0.497512	-34(GGGTATAAAAGG,-,0.00)
mm_36746.1	chr4	100567921	100568121	-	1	NA	NA	NA	89154	NM_001033773	381534	Mm.318133	NM_001033773	ENSMUSG00000069733	Ube2u	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding	0.055000	0.616915	
mm_152764.1	chr19	20385533	20385733	-	1	NA	NA	NA	5038	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.005000	0.353234	
mm_144496.1	chr18	24205927	24206127	+	1	NA	NA	NA	33	NM_001160404	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.190000	0.850746	
mm_10543.1	chr2	16548646	16548846	+	1	NA	NA	NA	192442	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.000000	0.318408	
mm_110320.1	chr12	34714243	34714443	-	1	NA	NA	NA	-185454	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.040000	0.447761	
mm_84054.1	chr9	58158922	58159122	-	1	NA	NA	NA	199	NM_012043	26968	Mm.367887	NM_012043	ENSMUSG00000037206	Islr	AW553146|Meflin	immunoglobulin superfamily containing leucine-rich repeat	protein-coding	0.025000	0.557214	
mm_29647.1	chr3	122194986	122195186	-	1	NA	NA	NA	-50471	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.010000	0.298507	
mm_162107.1	chrX	48674378	48674578	-	1	NA	NA	NA	0	NM_181751	236781	Mm.269129	NM_181751	ENSMUSG00000051209	Gpr119	-	G-protein coupled receptor 119	protein-coding	0.010000	0.512438	4(AGCTAGAAAAGC,-,0.00)
mm_100160.1	chr11	116382611	116382811	+	1	NA	NA	NA	30321	NM_027258	217340	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.030000	0.457711	
mm_114449.1	chr13	66933252	66933452	+	1	NA	NA	NA	-280	NM_025547	66410	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	0.100000	0.716418	
mm_162798.1	chr10	76726167	76726367	-	1	NA	NA	NA	-223	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.010000	0.452736	
mm_147815.1	chr18	61726253	61726453	-	1	NA	NA	NA	-22	NM_021296	17714	Mm.269657	NM_021296	ENSMUSG00000024580	Grpel2	mt-GrpE#2|mt-Grpel2	GrpE-like 2, mitochondrial	protein-coding	0.105000	0.666667	
mm_67387.1	chr7	79842466	79842666	-	1	NA	NA	NA	-214	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.015000	0.616915	
mm_20747.1	chr2	140060119	140060319	-	1	NA	NA	NA	6586	NM_001159640	75812	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0.010000	0.447761	
mm_93143.1	chr10	92165101	92165301	-	1	NA	NA	NA	-23	NR_028262	110333	Mm.429764	NR_028262		Rmst	100041799|AI853140|C230053E11Rik|D930049J19Rik|Dmt2|Gm3515|M2|Ncrms	rhabdomyosarcoma 2 associated transcript (non-coding RNA)	ncRNA	0.020000	0.517413	
mm_169286.1	chr13	97190525	97190725	-	1	NA	NA	NA	7732	NM_010422	15212	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.020000	0.447761	
mm_34242.1	chr4	141213873	141214073	+	1	NA	NA	NA	17	NM_001081174	76166	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723	REM2 and RAB-like small GTPase 1	protein-coding	0.070000	0.597015	53(GCTTTTAAATCG,+,0.00)
mm_29577.1	chr3	116969419	116969619	-	1	NA	NA	NA	-567	NM_023245	114301	Mm.253736	NM_023245	ENSMUSG00000033377	Palmd	4631423C22Rik|PALML	palmdelphin	protein-coding	0.015000	0.497512	-34(TTCCTTAAAGGG,-,0.00),-32(CCTTAAAGGGCA,+,0.00)
mm_65374.1	chr7	25073133	25073333	-	1	NA	NA	NA	-864	NM_008168	14809	Mm.2879	NM_008168	ENSMUSG00000003378	Grik5	GluK5|GluRgamma2|KA2	glutamate receptor, ionotropic, kainate 5 (gamma 2)	protein-coding	0.030000	0.651741	
mm_156124.1	chrX	116448864	116449064	+	1	NA	NA	NA	20	NM_001033471	382239	Mm.336224	NM_001033471	ENSMUSG00000072995	Cpxcr1	Gm1143	CPX chromosome region, candidate 1	protein-coding	0.000000	0.378109	
mm_39096.1	chr4	154898987	154899187	-	1	NA	NA	NA	-44	NM_025582	66469	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0.045000	0.651741	
mm_58852.1	chr7	16875327	16875527	+	1	NA	NA	NA	110	NM_001081655	629378	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	0.115000	0.786070	
mm_17797.1	chr2	33131586	33131786	-	1	NA	NA	NA	-44482	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.055000	0.621891	
mm_108558.1	chr12	84640836	84641036	+	1	NA	NA	NA	-83	NM_001168589	432677	Mm.311913	NM_001033776	ENSMUSG00000071235	Vrtn	7420416P09Rik	vertebrae development associated	protein-coding	0.015000	0.527363	
mm_42171.1	chr5	112261586	112261786	+	1	NA	NA	NA	5866	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.020000	0.487562	
mm_132225.1	chr16	32650426	32650626	+	1	NA	NA	NA	5883	NM_016788	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.000000	0.368159	
mm_74307.1	chr8	126589850	126590050	+	1	NA	NA	NA	3486	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.000000	0.422886	
mm_107445.1	chr12	36532695	36532895	+	1	NA	NA	NA	117179	NR_037309	100499526		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA	0.010000	0.378109	14(ACCTATAAAAAG,-,0.00)
mm_127340.1	chr15	100599635	100599835	+	1	NA	NA	NA	249	NM_001304965	19009	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0.070000	0.611940	
mm_122980.1	chr14	54983290	54983490	-	1	NA	NA	NA	-7614	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.000000	0.512438	
mm_140511.1	chr17	5573091	5573291	-	1	NA	NA	NA	80591	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.000000	0.497512	
mm_11131.1	chr2	28382227	28382427	+	1	NA	NA	NA	-65614	NM_001005420	241289	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	0.020000	0.398010	
mm_29971.1	chr3	133544191	133544391	-	1	NA	NA	NA	99	NM_001346736	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.075000	0.606965	
mm_97300.1	chr11	76497907	76498107	+	1	NA	NA	NA	-3512	NM_001346670	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.010000	0.582090	
mm_101217.1	chr11	20112801	20113001	-	1	NA	NA	NA	50	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.090000	0.696517	
mm_33101.1	chr4	124703521	124703721	+	1	NA	NA	NA	2922	NM_010213	14201	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	0.010000	0.611940	
mm_58471.1	chr7	3390723	3390923	+	1	NA	NA	NA	-3219	NM_133190	81905	Mm.357990	NM_133190	ENSMUSG00000053395	Cacng8	-	calcium channel, voltage-dependent, gamma subunit 8	protein-coding	0.005000	0.502488	
mm_11734.1	chr2	37516526	37516726	+	1	NA	NA	NA	0	NM_177383	338346	Mm.445325	NM_177383	ENSMUSG00000053164	Gpr21	C230004C13Rik	G protein-coupled receptor 21	protein-coding	0.010000	0.477612	
mm_58738.1	chr7	13030423	13030623	+	1	NA	NA	NA	4254	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.020000	0.557214	
mm_136778.1	chr17	10324503	10324703	+	1	NA	NA	NA	1	NR_045461	76634	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.025000	0.422886	86(GCATTTAAAGCC,+,0.00)
mm_28129.1	chr3	87012149	87012349	-	1	NA	NA	NA	-12909	NM_007639	12479	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0.005000	0.542289	
mm_203.1	chr1	16106271	16106471	+	1	NA	NA	NA	489	NM_133832	98711	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.040000	0.572139	
mm_168331.1	chr11	118222748	118222948	-	1	NA	NA	NA	-10106	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.025000	0.487562	
mm_41868.1	chr5	104459500	104459700	+	1	NA	NA	NA	143	NM_008861	18764	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	0.140000	0.776119	
mm_83197.1	chr9	41157401	41157601	-	1	NA	NA	NA	-7	NM_176860	72828	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0.130000	0.766169	
mm_162087.1	chrX	37265296	37265496	+	1	NA	NA	NA	21	NM_001039688	664609	Mm.296330	NM_001039688	ENSMUSG00000079639	Rhox4a	Rhox4|Rhox4.1	reproductive homeobox 4A	protein-coding	0.065000	0.537313	
mm_8861.1	chr1	162724741	162724941	-	1	NA	NA	NA	15715	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.010000	0.388060	-26(TACTTTTAAGGG,-,0.00),-25(ACTTTTAAGGGG,+,0.00)
mm_168324.1	chr11	115724739	115724939	-	1	NA	NA	NA	-16242	NM_008163	14784	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.025000	0.487562	
mm_6532.1	chr1	74851010	74851210	-	1	NA	NA	NA	-3919	NM_009872	12570	Mm.153833	NM_009872	ENSMUSG00000090071	Cdk5r2	B230310J22Rik|p39	cyclin-dependent kinase 5, regulatory subunit 2 (p39)	protein-coding	0.000000	0.537313	
mm_160212.1	chr7	98109209	98109409	-	1	NA	NA	NA	-61	NM_001256083	17921	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.030000	0.606965	
mm_43292.1	chr5	134313555	134313755	+	1	NA	NA	NA	1105	NM_001080746	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.080000	0.651741	
mm_121862.1	chr14	20702913	20703113	-	1	NA	NA	NA	-14	NM_025366	66121	Mm.246996	NM_025366	ENSMUSG00000063787	Chchd1	1110001O19Rik|2400010G13Rik|MRP-S37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding	0.135000	0.681592	
mm_22610.1	chr3	14533710	14533910	+	1	NA	NA	NA	22	NM_028915	71710	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	0.090000	0.626866	-86(TACTTTAAAGGC,-,0.00)
mm_60371.1	chr7	44465305	44465505	+	1	NA	NA	NA	-30	NM_026690	68352	Mm.88478	NM_026690	ENSMUSG00000038704	Aspdh	0610012D14Rik	aspartate dehydrogenase domain containing	protein-coding	0.005000	0.572139	
mm_93144.1	chr10	92165126	92165326	-	1	NA	NA	NA	-48	NR_028262	110333	Mm.429764	NR_028262		Rmst	100041799|AI853140|C230053E11Rik|D930049J19Rik|Dmt2|Gm3515|M2|Ncrms	rhabdomyosarcoma 2 associated transcript (non-coding RNA)	ncRNA	0.015000	0.492537	
mm_171514.1	chr4	146501864	146502064	+	1	NA	NA	NA	-36	NM_001243138	100041433	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247|OTTMUSG00000011075	zinc finger protein 981	protein-coding	0.020000	0.477612	
mm_35446.1	chr4	40239656	40239856	-	1	NA	NA	NA	69	NM_172689	230073	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.065000	0.611940	
mm_137674.1	chr17	28800669	28800869	+	1	NA	NA	NA	-357	NM_001081315	268936	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0.090000	0.721393	
mm_4167.1	chr1	171051157	171051357	+	1	NA	NA	NA	8146	NM_010188	14131	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	0.005000	0.427861	
mm_72406.1	chr8	81773013	81773213	+	1	NA	NA	NA	430551	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.020000	0.388060	
mm_57972.1	chr6	135349656	135349856	-	1	NA	NA	NA	-13175	NM_010128	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.045000	0.452736	
mm_120323.1	chr14	63142903	63143103	+	1	NA	NA	NA	20541	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.005000	0.378109	
mm_48317.1	chr5	138976984	138977184	-	1	NA	NA	NA	17869	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.040000	0.472637	
mm_60776.1	chr7	45559279	45559479	+	1	NA	NA	NA	4451	NM_025330	66065	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.015000	0.626866	-6(CCCTTTAGACCC,+,0.00)
mm_44922.1	chr5	35729201	35729401	-	1	NA	NA	NA	-25	NM_194344	231147	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.025000	0.606965	
mm_67275.1	chr7	78192440	78192640	-	1	NA	NA	NA	385298	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	0.020000	0.462687	-1(GCATTTATACTC,+,0.00)
mm_20635.1	chr2	132019335	132019535	-	1	NA	NA	NA	10553	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.015000	0.502488	
mm_91860.1	chr10	59441665	59441865	-	1	NA	NA	NA	14	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.045000	0.542289	
mm_126645.1	chr15	83788863	83789063	+	1	NA	NA	NA	8940	NM_172610	223726	Mm.36395	NM_172610	ENSMUSG00000041708	Mpped1	6230403M19|AW456965|D15Bwg0669e	metallophosphoesterase domain containing 1	protein-coding	0.040000	0.572139	
mm_102008.1	chr11	51605023	51605223	-	1	NA	NA	NA	1758	NM_001048061	15384	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.000000	0.368159	69(GCCTTTATAGGG,+,0.00),69(GCCTTTATAGGG,-,0.00)
mm_19911.1	chr2	114654788	114654988	-	1	NA	NA	NA	40	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	0.105000	0.661692	
mm_102091.1	chr11	52283135	52283335	-	1	NA	NA	NA	-221	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.185000	0.850746	
mm_109556.1	chr12	111758831	111759031	+	1	NA	NA	NA	63	NM_001025361	16593	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0.165000	0.761194	
mm_26586.1	chr3	151294060	151294260	+	1	NA	NA	NA	-143722	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.025000	0.542289	
mm_81193.1	chr9	107554484	107554684	+	1	NA	NA	NA	1	NM_019713	56289	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0.120000	0.681592	
mm_166279.1	chr5	92326703	92326903	-	1	NA	NA	NA	1276	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.025000	0.477612	
mm_92238.1	chr10	69352775	69352975	-	1	NA	NA	NA	37	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.090000	0.661692	
mm_160893.1	chr11	72215491	72215691	-	1	NA	NA	NA	1	NM_026068	67279	Mm.159496	NM_026068	ENSMUSG00000020801	Med31	3110004H13Rik|CGI-125|l11Jus15	mediator complex subunit 31	protein-coding	0.070000	0.656716	
mm_169227.1	chr1	36691463	36691663	+	1	NA	NA	NA	76	NM_009942	12859	Mm.180182	NM_009942	ENSMUSG00000061518	Cox5b	-	cytochrome c oxidase subunit Vb	protein-coding	0.095000	0.666667	
mm_168423.1	chr11	33161459	33161659	-	1	NA	NA	NA	1647	NM_001252261	18148	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	0.005000	0.358209	
mm_127423.1	chr15	101267146	101267346	+	1	NA	NA	NA	400	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.035000	0.552239	
mm_84450.1	chr9	66514435	66514635	-	1	NA	NA	NA	58	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.025000	0.587065	-54(CCCTTTCTGGGC,+,0.00)
mm_64475.1	chr7	143052687	143052887	+	1	NA	NA	NA	37	NM_133655	12520	Mm.806	NM_133655	ENSMUSG00000037706	Cd81	Tapa-1|Tapa1|Tspan28	CD81 antigen	protein-coding	0.105000	0.671642	-34(GTCTATAAAGAG,-,0.00)
mm_41810.1	chr5	103780144	103780344	+	1	NA	NA	NA	25671	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.010000	0.398010	15(GGGTCTTTAAAG,-,0.00)
mm_92030.1	chr10	62477661	62477861	-	1	NA	NA	NA	8837	NM_001113355	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.005000	0.343284	
mm_51912.1	chr6	91233115	91233315	+	1	NA	NA	NA	20451	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.040000	0.616915	
mm_96924.1	chr11	70509876	70510076	+	1	NA	NA	NA	4640	NM_001013607	327956	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	0.010000	0.497512	-36(CTGTCTAAAGGC,-,0.00)
mm_82645.1	chr9	22016342	22016542	-	1	NA	NA	NA	13454	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.020000	0.567164	
mm_146809.1	chr18	20746200	20746400	-	1	NA	NA	NA	104	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.120000	0.706468	
mm_45911.1	chr5	89434940	89435140	-	1	NA	NA	NA	22858	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.010000	0.368159	-16(TTTTTTAGAGTC,+,0.00)
mm_36081.1	chr4	58206483	58206683	-	1	NA	NA	NA	13	NM_022814	64817	Mm.261024	NM_022814	ENSMUSG00000028369	Svep1	1110021D17Rik|4833413O10Rik|AA387071|D430029O09Rik|Polydom	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	protein-coding	0.045000	0.567164	-58(CATTTTATAGGC,+,0.00)
mm_11563.1	chr2	32875765	32875965	+	1	NA	NA	NA	-269	NM_146119	227737	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.050000	0.606965	
mm_8282.1	chr1	140097737	140097937	-	1	NA	NA	NA	85574	NM_009888	12628	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0.010000	0.388060	
mm_13645.1	chr2	114050343	114050543	+	1	NA	NA	NA	2432	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.015000	0.522388	
mm_171381.1	chr4	119294120	119294320	-	1	NA	NA	NA	293	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.165000	0.786070	
mm_159716.1	chr5	33661112	33661312	+	1	NA	NA	NA	3084	NM_001040435	21335	Mm.379024	NM_011524	ENSMUSG00000037313	Tacc3	Aint|C86661|Eric1	transforming, acidic coiled-coil containing protein 3	protein-coding	0.025000	0.442786	
mm_160499.1	chr9	14782878	14783078	-	1	NA	NA	NA	-14	NM_019683	56503	Mm.395005	NM_019683	ENSMUSG00000031931	Ankrd49	AW060934|C86108|Gbif	ankyrin repeat domain 49	protein-coding	0.010000	0.338308	
mm_115270.1	chr13	111580501	111580701	+	1	NA	NA	NA	-90560	NM_001122963	73274	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.025000	0.467662	
mm_49774.1	chr6	34873298	34873498	+	1	NA	NA	NA	4667	NM_199145	78412	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.005000	0.467662	
mm_57313.1	chr6	124727019	124727219	-	1	NA	NA	NA	6035	NM_013545	15170	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.010000	0.393035	
mm_117958.1	chr13	99447427	99447627	-	1	NA	NA	NA	-34701	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.035000	0.616915	
mm_51523.1	chr6	83179499	83179699	+	1	NA	NA	NA	10	NM_007835	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.015000	0.577114	
mm_23222.1	chr3	49062263	49062463	+	1	NA	NA	NA	-453263	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo	0.035000	0.487562	
mm_112738.1	chr13	19305048	19305248	+	1	NA	NA	NA	90665	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.457711	
mm_117480.1	chr13	77101626	77101826	-	1	NA	NA	NA	33742	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0.000000	0.328358	
mm_117774.1	chr13	96658586	96658786	-	1	NA	NA	NA	12250	NM_008255	15357	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0.020000	0.502488	
mm_81236.1	chr9	107914892	107915092	+	1	NA	NA	NA	-11	NM_001287261	19882	Mm.3901	NM_009074	ENSMUSG00000032584	Mst1r	CD136|CDw136|Fv-2|Fv2|PTK8|Ron|STK	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding	0.035000	0.557214	
mm_170002.1	chr1	71652750	71652950	-	1	NA	NA	NA	384	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.065000	0.631841	
mm_125223.1	chr15	34099420	34099620	+	1	NA	NA	NA	16801	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.025000	0.373134	
mm_67687.1	chr7	89404098	89404298	-	1	NA	NA	NA	-168	NM_008055	14366	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	0.090000	0.741294	
mm_65300.1	chr7	24611097	24611297	-	1	NA	NA	NA	-131	NM_001102613	232970	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|ENSMUSG00000061511|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	0.070000	0.592040	
mm_27072.1	chr3	28265139	28265339	-	1	NA	NA	NA	2025	NM_001163009	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.010000	0.477612	
mm_157294.1	chrX	20862256	20862456	-	1	NA	NA	NA	826	NR_049190	100885829		NR_049190	ENSMUSG00000093408	Mir5617	Gm25192|mir-5617|mmu-mir-5617	microRNA 5617	ncRNA	0.000000	0.567164	
mm_115921.1	chr13	23551567	23551767	-	1	NA	NA	NA	-24	NM_175655	319157	Mm.442307	NM_175655	ENSMUSG00000069274	Hist1h4f	-	histone cluster 1, H4f	protein-coding	0.070000	0.542289	-57(TCCTCTAAAAGG,-,0.00)
mm_115976.1	chr13	24206146	24206346	-	1	NA	NA	NA	74544	NM_001311122	68732	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0.025000	0.512438	
mm_65923.1	chr7	30242767	30242967	-	1	NA	NA	NA	-6102	NM_001289817	381867	Mm.483986	NM_001289817	ENSMUSG00000100512	Ovol3	Gm1903|movo3	ovo like zinc finger 3	protein-coding	0.030000	0.577114	
mm_150444.1	chr19	38016378	38016578	+	1	NA	NA	NA	27099	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.010000	0.507463	-27(GGCTCTATAAGA,-,0.00)
mm_74671.1	chr8	13838461	13838661	-	1	NA	NA	NA	-472	NM_153093	231201	Mm.423959	NM_153093	ENSMUSG00000057116	AF366264	Susp4	cDNA sequence AF366264	protein-coding	0.015000	0.472637	
mm_170731.1	chr2	152226770	152226970	+	1	NA	NA	NA	30	NM_007788	12995	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0.105000	0.706468	
mm_147635.1	chr18	60211457	60211657	-	1	NA	NA	NA	-520	NM_001033767	240327	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.000000	0.412935	
mm_123270.1	chr14	61365423	61365623	-	1	NA	NA	NA	-5078	NM_026598	68177	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0.035000	0.442786	-71(CCTTTTAAATTT,+,0.00)
mm_94620.1	chr11	16759526	16759726	+	1	NA	NA	NA	7423	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.010000	0.437811	
mm_100722.1	chr11	3913681	3913881	-	1	NA	NA	NA	883	NM_153142	103710	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0.105000	0.726368	
mm_140406.1	chr17	87644782	87644982	+	1	NA	NA	NA	8903	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.000000	0.422886	
mm_63254.1	chr7	126649221	126649421	+	1	NA	NA	NA	12	NM_029339	75565	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	0.095000	0.557214	
mm_41225.1	chr5	88650608	88650808	+	1	NA	NA	NA	24872	NM_001098476	231413	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.000000	0.383085	
mm_147445.1	chr18	46525906	46526106	-	1	NA	NA	NA	-35	NM_173423	240263	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.120000	0.746269	
mm_17485.1	chr2	28582620	28582820	-	1	NA	NA	NA	559	NM_148928	70239	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0.055000	0.562189	
mm_142827.1	chr17	51767400	51767600	-	1	NA	NA	NA	44554	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.015000	0.363184	
mm_123955.1	chr14	74784104	74784304	-	1	NA	NA	NA	51907	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.005000	0.318408	
mm_141390.1	chr17	29148882	29149082	-	1	NA	NA	NA	13926	NM_001002786	442827	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	0.015000	0.497512	
mm_78105.1	chr9	20492679	20492879	+	1	NA	NA	NA	-33	NM_001110309	235028	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	0.080000	0.597015	
mm_53506.1	chr6	135368793	135368993	+	1	NA	NA	NA	1400	NM_001288627	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.010000	0.487562	
mm_128729.1	chr15	64110896	64111096	-	1	NA	NA	NA	-50548	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.015000	0.572139	
mm_4390.1	chr1	172341107	172341307	+	1	NA	NA	NA	-3	NM_001039484	16513	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	0.090000	0.741294	
mm_78539.1	chr9	35267776	35267976	+	1	NA	NA	NA	-5	NM_028040	71989	Mm.273515	NM_028040	ENSMUSG00000032044	Rpusd4	2410001E19Rik	RNA pseudouridylate synthase domain containing 4	protein-coding	0.095000	0.691542	
mm_23716.1	chr3	69005246	69005446	+	1	NA	NA	NA	374	NM_133786	70099	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	0.060000	0.676617	
mm_133862.1	chr16	96329967	96330167	+	1	NA	NA	NA	-31690	NM_001177887	72058	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.015000	0.477612	
mm_117887.1	chr13	99422103	99422303	-	1	NA	NA	NA	-9377	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.020000	0.432836	
mm_41381.1	chr5	90723476	90723676	+	1	NA	NA	NA	-35722	NM_009141	20311	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0.005000	0.383085	
mm_6790.1	chr1	84140970	84141170	-	1	NA	NA	NA	77891	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.432836	
mm_77770.1	chr9	3005823	3006023	+	1	NA	NA	NA	32820	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.020000	0.363184	
mm_71614.1	chr8	56877138	56877338	+	1	NA	NA	NA	326104	NM_015791	50753	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0.000000	0.308458	
mm_46988.1	chr5	115326900	115327100	-	1	NA	NA	NA	-177	NM_025573	108014	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0.080000	0.651741	-98(CGATCTTAAAGG,-,0.00)
mm_96833.1	chr11	70000718	70000918	+	1	NA	NA	NA	192	NM_007888	13543	Mm.5114	NM_007888	ENSMUSG00000020888	Dvl2	-	dishevelled segment polarity protein 2	protein-coding	0.110000	0.676617	
mm_165808.1	chr3	144760662	144760862	-	1	NA	NA	NA	215	NR_130895	12722	Mm.454553	NM_009899	ENSMUSG00000056025	Clca3a1	Cacc|Clca1	chloride channel accessory 3A1	protein-coding	0.015000	0.542289	
mm_152356.1	chr19	10064073	10064273	-	1	NA	NA	NA	22625	NM_021890	60527	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0.020000	0.557214	
mm_80524.1	chr9	80111296	80111496	+	1	NA	NA	NA	44493	NM_146003	215351	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.010000	0.427861	48(CCATTTAGAGGT,+,0.00)
mm_35126.1	chr4	11191124	11191324	-	1	NA	NA	NA	-127	NM_001037134	12448	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	0.140000	0.746269	
mm_72379.1	chr8	81364125	81364325	+	1	NA	NA	NA	21663	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.005000	0.308458	72(GTTTTTATGCAG,+,0.00)
mm_67963.1	chr7	100550650	100550850	-	1	NA	NA	NA	13650	NM_183270	68185	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	0.010000	0.537313	
mm_163788.1	chr14	8258738	8258938	-	1	NA	NA	NA	1	NM_001161667	93732	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0.010000	0.522388	-34(GGGCCTATAGGG,-,0.00)
mm_61150.1	chr7	57825584	57825784	+	1	NA	NA	NA	234511	NM_008071	14402	Mm.8004	NM_008071	ENSMUSG00000033676	Gabrb3	A230092K12Rik|AW049585|Cp1|Gabrb-3|beta3	gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	protein-coding	0.005000	0.343284	
mm_44074.1	chr5	148959230	148959430	+	1	NA	NA	NA	9080	NR_040686	71473	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	0.050000	0.611940	
mm_169256.1	chr1	37890452	37890652	+	1	NA	NA	NA	-1	NM_027098	107734	Mm.26614	NM_027098	ENSMUSG00000026087	Mrpl30	2310001L22Rik|MRP-L28|Rpml28	mitochondrial ribosomal protein L30	protein-coding	0.085000	0.577114	
mm_89361.1	chr10	88413966	88414166	+	1	NA	NA	NA	34654	NM_001004164	432486	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.005000	0.328358	
mm_134574.1	chr16	20401686	20401886	-	1	NA	NA	NA	24608	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.015000	0.527363	
mm_71705.1	chr8	61931009	61931209	+	1	NA	NA	NA	3022	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.000000	0.452736	
mm_6951.1	chr1	85895358	85895558	-	1	NA	NA	NA	948	NM_022417	64294	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.015000	0.567164	
mm_88372.1	chr10	76032582	76032782	+	1	NA	NA	NA	70	NM_177475	64453	Mm.80609	NM_177475	ENSMUSG00000049764	Zfp280b	D10Jhu82e|Suhw2	zinc finger protein 280B	protein-coding	0.115000	0.741294	
mm_101194.1	chr11	18890894	18891094	-	1	NA	NA	NA	127975	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.000000	0.393035	
mm_114007.1	chr13	52596830	52597030	+	1	NA	NA	NA	48	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.010000	0.522388	
mm_61088.1	chr7	51622522	51622722	+	1	NA	NA	NA	792	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.025000	0.437811	
mm_84019.1	chr9	57677104	57677304	-	1	NA	NA	NA	6451	NM_009993	13077	Mm.15537	NM_009993	ENSMUSG00000032310	Cyp1a2	CP12|Cyp1a1|P450-3	cytochrome P450, family 1, subfamily a, polypeptide 2	protein-coding	0.030000	0.427861	
mm_37150.1	chr4	117120237	117120437	-	1	NA	NA	NA	5388	NR_024078	78611	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0.030000	0.487562	
mm_165333.1	chr2	114047476	114047676	-	1	NA	NA	NA	5299	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.010000	0.507463	
mm_112546.1	chr13	12276327	12276527	+	1	NA	NA	NA	-18314	NM_001081128	238505	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.040000	0.567164	
mm_128152.1	chr15	32244349	32244549	-	1	NA	NA	NA	213	NR_038186	100616095	Mm.391938	NR_038186	ENSMUSG00000096956	Snhg18	0610007N19Rik|Snord123	small nucleolar RNA host gene 18	ncRNA	0.060000	0.606965	-4(CTGTATAAAGGG,-,0.00)
mm_122469.1	chr14	45530104	45530304	-	1	NA	NA	NA	-139	NM_146054	218952	Mm.210018	NM_146054	ENSMUSG00000037712	Fermt2	AA960555|Kindlin-2|Mig2|Plekhc1	fermitin family member 2	protein-coding	0.120000	0.736318	-67(TTCCATAAAAGG,-,0.00),-65(CCATAAAAGGGC,+,0.00)
mm_71986.1	chr8	70616027	70616227	+	1	NA	NA	NA	-717	NM_153074	211228	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0.005000	0.592040	
mm_155805.1	chrX	99135979	99136179	+	1	NA	NA	NA	18	NM_010110	13641	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	0.050000	0.621891	
mm_141000.1	chr17	24894962	24895162	-	1	NA	NA	NA	25	NM_001163102	193838	Mm.440199	NM_001163102	ENSMUSG00000073436	Eme2	2810013J18Rik	essential meiotic structure-specific endonuclease subunit 2	protein-coding	0.100000	0.616915	
mm_47898.1	chr5	134747353	134747553	-	1	NA	NA	NA	-130	NM_007925	13717	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	0.045000	0.641791	
mm_94225.1	chr11	3233886	3234086	+	1	NA	NA	NA	30967	NM_001166549	74203	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0.010000	0.308458	
mm_87455.1	chr10	51483739	51483939	+	1	NA	NA	NA	3227	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.010000	0.452736	
mm_148053.1	chr18	71913747	71913947	-	1	NA	NA	NA	437222	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.010000	0.353234	
mm_44232.1	chr5	5265129	5265329	-	1	NA	NA	NA	839	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.010000	0.398010	-9(TTTTTTATAGCT,+,0.00)
mm_109466.1	chr12	111408438	111408638	+	1	NA	NA	NA	1729	NM_001101503	380787	Mm.125602	NM_001101503	ENSMUSG00000087075	A230065H16Rik	Gm898|Lbh2	RIKEN cDNA A230065H16 gene	protein-coding	0.010000	0.592040	
mm_31443.1	chr4	48585107	48585307	+	1	NA	NA	NA	14	NM_021436	230157	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0.185000	0.800995	
mm_148337.1	chr18	84412294	84412494	-	1	NA	NA	NA	177110	NM_001033341	240476	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.055000	0.527363	
mm_122131.1	chr14	31160491	31160691	-	1	NA	NA	NA	8050	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.035000	0.597015	
mm_122864.1	chr14	54912224	54912424	-	1	NA	NA	NA	808	NM_021551	59049	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	0.095000	0.691542	
mm_10684.1	chr2	22621762	22621962	+	1	NA	NA	NA	-465	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.020000	0.601990	
mm_111102.1	chr12	80792914	80793114	-	1	NA	NA	NA	2482	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.015000	0.527363	
mm_15025.1	chr2	152686931	152687131	+	1	NA	NA	NA	-117	NM_025543	66405	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	0.070000	0.547264	
mm_164933.1	chr18	82996985	82997185	+	1	NA	NA	NA	-76525	NR_033307	75853	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.015000	0.487562	
mm_115093.1	chr13	102706832	102707032	+	1	NA	NA	NA	13374	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.005000	0.402985	
mm_119012.1	chr14	29978252	29978452	+	1	NA	NA	NA	15	NM_027493	56249	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	0.060000	0.562189	
mm_87507.1	chr10	52391508	52391708	+	1	NA	NA	NA	0	NM_025684	66650	Mm.90950	NM_025684	ENSMUSG00000038624	Nepn	5730521E12Rik|Npn|periolin	nephrocan	protein-coding	0.010000	0.472637	-32(TGGTATAAAAAG,-,0.00)
mm_83921.1	chr9	56620508	56620708	-	1	NA	NA	NA	15040	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.045000	0.582090	
mm_102517.1	chr11	60811135	60811335	-	1	NA	NA	NA	30	NM_009171	20425	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	0.075000	0.681592	
mm_161666.1	chr17	12876118	12876318	+	1	NA	NA	NA	184	NM_030726	80978	Mm.160368	NM_030726	ENSMUSG00000059408	Mrgprh	Gpr90|Mgrb|MrgH	MAS-related GPR, member H	protein-coding	0.005000	0.482587	
mm_50770.1	chr6	53621103	53621303	+	1	NA	NA	NA	47829	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.010000	0.358209	
mm_82679.1	chr9	22132229	22132429	-	1	NA	NA	NA	-464	NM_001102404	11433	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.025000	0.512438	
mm_153289.1	chr19	37317460	37317660	-	1	NA	NA	NA	13053	NM_031156	15925	Mm.28366	NM_031156	ENSMUSG00000056999	Ide	1300012G03Rik|4833415K22Rik|AA675336|AI507533	insulin degrading enzyme	protein-coding	0.000000	0.532338	
mm_4210.1	chr1	171270241	171270441	+	1	NA	NA	NA	13	NM_020579	57370	Mm.274011	NM_020579	ENSMUSG00000052423	B4galt3	9530061M23Rik|AA104562|AW125175|ESTM26|ESTM6|R74981	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 3	protein-coding	0.075000	0.686567	
mm_138293.1	chr17	34629477	34629677	+	1	NA	NA	NA	-109	NM_030890	260297	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31	proline-rich transmembrane protein 1	protein-coding	0.045000	0.641791	-74(GTCCCTTTAAGC,-,0.00),-72(CCCTTTAAGCTC,+,0.00)
mm_156370.1	chrX	139618428	139618628	+	1	NA	NA	NA	7908	NM_023270	66889	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	0.000000	0.547264	42(GCTTTTAGGGTA,+,0.00)
mm_85584.1	chr9	107300574	107300774	-	1	NA	NA	NA	4015	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.030000	0.611940	
mm_60535.1	chr7	44480279	44480479	+	1	NA	NA	NA	-4138	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.507463	
mm_172898.1	chr9	57110770	57110970	+	1	NA	NA	NA	-19907	NM_028636	73744	Mm.30110	NM_028636	ENSMUSG00000032295	Man2c1	1110025H24Rik	mannosidase, alpha, class 2C, member 1	protein-coding	0.005000	0.452736	
mm_106574.1	chr11	120711038	120711238	-	1	NA	NA	NA	2629	NM_016665	20892	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0.005000	0.562189	
mm_50122.1	chr6	41535421	41535621	+	1	NA	NA	NA	13745	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.025000	0.542289	
mm_38769.1	chr4	147904795	147904995	-	1	NA	NA	NA	14	NM_001285922	170731	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0.075000	0.611940	
mm_43575.1	chr5	137746046	137746246	+	1	NA	NA	NA	177	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.055000	0.631841	
mm_167004.1	chr7	50313739	50313939	+	1	NA	NA	NA	262045	NR_045928	73515	Mm.437440	NR_045928	ENSMUSG00000085265	Nell1os	1700081H22Rik	NEL-like 1, opposite strand	ncRNA	0.000000	0.383085	
mm_107613.1	chr12	49385354	49385554	+	1	NA	NA	NA	2447	NM_008241	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.065000	0.641791	
mm_139810.1	chr17	66471859	66472059	+	1	NA	NA	NA	-22209	NM_001114098	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.010000	0.487562	
mm_152545.1	chr19	11372152	11372352	-	1	NA	NA	NA	-3236	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.000000	0.432836	
mm_60222.1	chr7	43562234	43562434	+	1	NA	NA	NA	-36	NM_001008549	210104	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0.070000	0.567164	
mm_7728.1	chr1	130729155	130729355	-	1	NA	NA	NA	-2	NM_001162415	18640	Mm.249861	NM_008825	ENSMUSG00000026409	Pfkfb2	4930568D07Rik	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding	0.010000	0.373134	45(GTTTATATAGGT,+,0.00)
mm_53029.1	chr6	124493036	124493236	+	1	NA	NA	NA	23	NM_181344	232371	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0.000000	0.557214	-56(CTCCCTAAAGGG,-,0.00),-54(CCCTAAAGGGCC,+,0.00)
mm_44134.1	chr5	150018691	150018891	+	1	NA	NA	NA	116	NM_001289566	140498	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	0.050000	0.537313	
mm_157370.1	chrX	37218234	37218434	-	1	NA	NA	NA	3924	NM_001025084	385343	Mm.379566	NM_001025084	ENSMUSG00000071773	Rhox1	-	reproductive homeobox 1	protein-coding	0.035000	0.572139	
mm_99411.1	chr11	102268684	102268884	+	1	NA	NA	NA	-39	NM_148953	217217	Mm.216432	NM_148953	ENSMUSG00000034768	Asb16	-	ankyrin repeat and SOCS box-containing 16	protein-coding	0.015000	0.587065	-93(GCCTATTTATAG,-,0.00),-91(CTATTTATAGCC,+,0.00)
mm_71760.1	chr8	66386715	66386915	+	1	NA	NA	NA	514	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.005000	0.432836	
mm_58548.1	chr7	4690548	4690748	+	1	NA	NA	NA	-280	NM_001003920	381979	Mm.297064	NM_001003920	ENSMUSG00000035390	Brsk1	Gm1100|SAD-B|SADB	BR serine/threonine kinase 1	protein-coding	0.080000	0.726368	
mm_152416.1	chr19	10669355	10669555	-	1	NA	NA	NA	8616	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.020000	0.542289	
mm_105977.1	chr11	115564024	115564224	-	1	NA	NA	NA	-320	NM_001002929	445007	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	0.065000	0.537313	
mm_21365.1	chr2	157134041	157134241	-	1	NA	NA	NA	1081	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.025000	0.398010	
mm_69782.1	chr7	141090289	141090489	-	1	NA	NA	NA	10157	NM_023059	24058	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0.025000	0.597015	
mm_152147.1	chr19	7206181	7206381	-	1	NA	NA	NA	3	NM_134150	107260	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	0.070000	0.616915	
mm_22794.1	chr3	22211258	22211458	+	1	NA	NA	NA	-40012	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0.000000	0.283582	
mm_45078.1	chr5	43909772	43909972	-	1	NA	NA	NA	41063	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.005000	0.437811	
mm_68299.1	chr7	105744235	105744435	-	1	NA	NA	NA	3	NM_020024	24075	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	0.145000	0.731343	
mm_10903.1	chr2	25332135	25332335	+	1	NA	NA	NA	336	NR_027448	100272219	Mm.382103	NR_027448	ENSMUSG00000097345	AA543186	-	expressed sequence AA543186	ncRNA	0.090000	0.597015	
mm_64419.1	chr7	142575930	142576130	+	1	NA	NA	NA	1117	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.010000	0.502488	
mm_159566.1	chr4	111919391	111919591	+	1	NA	NA	NA	-64	NM_001100466	639774	Mm.248185	NM_001100466	ENSMUSG00000078599	Skint8	OTTMUSG00000009475	selection and upkeep of intraepithelial T cells 8	protein-coding	0.005000	0.427861	
mm_81223.1	chr9	107614493	107614693	+	1	NA	NA	NA	-5352	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.025000	0.457711	-55(TTCTCTAAAAAG,-,0.00)
mm_61273.1	chr7	66733472	66733672	+	1	NA	NA	NA	-9932	NM_001164201	545975	Mm.380104	NM_001164201	ENSMUSG00000030510	Cers3	4930550L11Rik|Gm488|Lass3|T3L	ceramide synthase 3	protein-coding	0.055000	0.582090	
mm_93673.1	chr10	117710553	117710753	-	1	NA	NA	NA	105	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.130000	0.706468	
mm_151669.1	chr19	4186017	4186217	-	1	NA	NA	NA	4930	NM_178650	108995	Mm.288312	NM_178650	ENSMUSG00000040247	Tbc1d10c	1810062O14Rik|AI428527	TBC1 domain family, member 10c	protein-coding	0.005000	0.492537	
mm_169394.1	chr1	44374888	44375088	-	1	NA	NA	NA	-156057	NM_207281	403183	Mm.336176	NM_207281	ENSMUSG00000046828	Mettl21e	4832428D23Rik|Gm991	methyltransferase like 21E	protein-coding	0.060000	0.636816	
mm_116551.1	chr13	46726511	46726711	-	1	NA	NA	NA	1238	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.035000	0.467662	
mm_1770.1	chr1	77847925	77848125	+	1	NA	NA	NA	-332937	NM_007936	13838	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.000000	0.487562	75(CCTTTTAAATCC,+,0.00)
mm_135366.1	chr16	44027890	44028090	-	1	NA	NA	NA	-45	NM_001172107	207798	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.050000	0.522388	
mm_85629.1	chr9	107616193	107616393	-	1	NA	NA	NA	-7052	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.020000	0.537313	
mm_38583.1	chr4	141819888	141820088	-	1	NA	NA	NA	6017	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.005000	0.348259	
mm_28410.1	chr3	90292679	90292879	-	1	NA	NA	NA	22630	NR_105979	102465612		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.055000	0.522388	-35(GTCTCTTAAAAC,-,0.00)
mm_152500.1	chr19	11130739	11130939	-	1	NA	NA	NA	39	NM_027058	69369	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0.040000	0.601990	
mm_32036.1	chr4	95738286	95738486	+	1	NA	NA	NA	158965	NM_029347	75578	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.015000	0.437811	
mm_144523.1	chr18	25019087	25019287	+	1	NA	NA	NA	146778	NM_001142697	66648	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.000000	0.253731	
mm_44111.1	chr5	149411701	149411901	+	1	NA	NA	NA	-5	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.050000	0.641791	
mm_68188.1	chr7	104150451	104150651	-	1	NA	NA	NA	5	NM_198624	244179	Mm.189668	NM_198624	ENSMUSG00000051437	Ubqlnl	4922504M18Rik|Gm490	ubiquilin-like	protein-coding	0.010000	0.462687	
mm_143198.1	chr17	62733978	62734178	-	1	NA	NA	NA	147239	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.010000	0.407960	
mm_36904.1	chr4	107923387	107923587	-	1	NA	NA	NA	102	NM_009949	12896	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0.090000	0.676617	
mm_56818.1	chr6	116716654	116716854	-	1	NA	NA	NA	4	NM_178768	319776	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.015000	0.621891	
mm_22669.1	chr3	14872196	14872396	+	1	NA	NA	NA	8758	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.000000	0.298507	49(GCCTATTAAAAA,-,0.00)
mm_104023.1	chr11	85832202	85832402	-	1	NA	NA	NA	86	NR_077059	69909	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.090000	0.721393	
mm_116464.1	chr13	43478800	43479000	-	1	NA	NA	NA	2073	NM_019930	56705	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.020000	0.462687	
mm_106539.1	chr11	120578795	120578995	-	1	NA	NA	NA	2725	NM_133796	192662	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.005000	0.587065	
mm_6152.1	chr1	64956657	64956857	-	1	NA	NA	NA	67	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.105000	0.701493	
mm_105081.1	chr11	100822451	100822651	-	1	NA	NA	NA	19	NM_011489	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.030000	0.542289	-51(CCTTTTAGAAGG,+,0.00)
mm_150331.1	chr19	34574931	34575131	+	1	NA	NA	NA	-8498	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.000000	0.383085	
mm_4396.1	chr1	172370379	172370579	+	1	NA	NA	NA	-6052	NM_026234	67556	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	0.005000	0.487562	
mm_24201.1	chr3	88616121	88616321	+	1	NA	NA	NA	14	NM_001198911	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.005000	0.532338	
mm_117714.1	chr13	95255030	95255230	-	1	NA	NA	NA	-4794	NM_001346782	218461	Mm.100167	NM_172263	ENSMUSG00000021684	Pde8b	B230331L10Rik|C030047E14Rik	phosphodiesterase 8B	protein-coding	0.005000	0.482587	-59(ACCTCTTAAAGG,-,0.00),-58(CCTCTTAAAGGC,+,0.00),-57(CTCTTAAAGGCC,+,0.00)
mm_106168.1	chr11	116677345	116677545	-	1	NA	NA	NA	2848	NR_028570	100216538		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0.030000	0.502488	
mm_82502.1	chr9	20451761	20451961	-	1	NA	NA	NA	8299	NM_011753	22688	Mm.107441	NM_011753	ENSMUSG00000063108	Zfp26	5033428C05Rik|KRAB15|Zfp-26|Zfp70|Zfp81-rs1|mKIAA4196|mkr-3|mszf14|mszf52	zinc finger protein 26	protein-coding	0.000000	0.253731	
mm_165291.1	chr2	90816213	90816413	+	1	NA	NA	NA	-30842	NM_001317241	56428	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	0.020000	0.457711	38(TCCCATTAAAGA,-,0.00)
mm_105873.1	chr11	114909025	114909225	-	1	NA	NA	NA	19084	NM_170758	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.005000	0.492537	
mm_134195.1	chr16	10993006	10993206	-	1	NA	NA	NA	15	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.100000	0.741294	
mm_52238.1	chr6	104593064	104593264	+	1	NA	NA	NA	100120	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding	0.000000	0.308458	
mm_162881.1	chr10	100590341	100590541	-	1	NA	NA	NA	-1182	NM_175128	68281	Mm.268474	NM_175128	ENSMUSG00000046567	4930430F08Rik	4930571E09Rik|A730088G13Rik|AW551239|C430008C19Rik	RIKEN cDNA 4930430F08 gene	protein-coding	0.000000	0.383085	
mm_130672.1	chr15	100674612	100674812	-	1	NA	NA	NA	-5212	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.020000	0.512438	
mm_153788.1	chr19	45816288	45816488	-	1	NA	NA	NA	-325	NM_145703	80906	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	0.030000	0.582090	
mm_149016.1	chr19	8741338	8741538	+	1	NA	NA	NA	14	NM_001167799	56389	Mm.153061	NM_019829	ENSMUSG00000010110	Stx5a	0610031F24Rik|D19Ertd627e|Stx5	syntaxin 5A	protein-coding	0.065000	0.557214	
mm_112170.1	chr12	113416210	113416410	-	1	NA	NA	NA	-73255	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.462687	
mm_123945.1	chr14	73376837	73377037	-	1	NA	NA	NA	8334	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.000000	0.427861	-68(AGCCCTATAAGG,-,0.00),-66(CCCTATAAGGAA,+,0.00)
mm_143078.1	chr17	57044411	57044611	-	1	NA	NA	NA	-2857	NM_175333	103775	Mm.33647	NM_175333	ENSMUSG00000011486	Slc25a41	4933406J04Rik|AI507137	solute carrier family 25, member 41	protein-coding	0.000000	0.497512	
mm_95761.1	chr11	54906731	54906931	+	1	NA	NA	NA	3977	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.005000	0.502488	
mm_35768.1	chr4	46196179	46196379	-	1	NA	NA	NA	32	NM_011728	22590	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	0.080000	0.601990	
mm_10269.1	chr2	9880368	9880568	+	1	NA	NA	NA	-778	NR_024257	381347	Mm.441450	NR_024257		4930412O13Rik	ENSMUSG00000075535|Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.025000	0.437811	85(GAGTTTAAAAGG,-,0.00)
mm_63280.1	chr7	126766311	126766511	+	1	NA	NA	NA	-3	NM_024228	68616	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	0.035000	0.651741	
mm_13836.1	chr2	119351191	119351391	+	1	NA	NA	NA	49	NM_026929	69065	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	0.080000	0.656716	-33(GGGTTTAAAGAG,-,0.00),-31(GTTTAAAGAGCG,+,0.00)
mm_4995.1	chr1	191821383	191821583	+	1	NA	NA	NA	10	NM_010892	18005	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0.100000	0.621891	
mm_161578.1	chr16	26968052	26968252	-	1	NA	NA	NA	93	NM_001285916	239789	Mm.326909	NM_001013761	ENSMUSG00000068428	Gmnc	Gemc1|Gm1778|Gm606	geminin coiled-coil domain containing	protein-coding	0.075000	0.661692	
mm_18231.1	chr2	51934600	51934800	-	1	NA	NA	NA	-56	NM_001141982	71684	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	0.035000	0.577114	
mm_32680.1	chr4	115784870	115785070	+	1	NA	NA	NA	156	NM_181040	230649	Mm.109600	NM_181040	ENSMUSG00000028710	Atpaf1	6330547J17Rik|AI593252|ATP11|ATP11p	ATP synthase mitochondrial F1 complex assembly factor 1	protein-coding	0.135000	0.741294	
mm_129110.1	chr15	76069620	76069820	-	1	NA	NA	NA	64	NM_134089	105782	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	0.135000	0.746269	
mm_126879.1	chr15	89429962	89430162	+	1	NA	NA	NA	-135	NR_037153	12651	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	0.035000	0.502488	
mm_35063.1	chr4	6453653	6453853	-	1	NA	NA	NA	518	NM_010945	18201	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.145000	0.781095	
mm_118876.1	chr14	25861972	25862172	+	1	NA	NA	NA	19917	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.035000	0.537313	
mm_55646.1	chr6	72361332	72361532	-	1	NA	NA	NA	1000	NR_138581	66510	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0.010000	0.527363	
mm_16180.1	chr2	172643846	172644046	+	1	NA	NA	NA	92955	NM_001159696	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding	0.030000	0.601990	
mm_127911.1	chr15	9529730	9529930	-	1	NA	NA	NA	46	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.005000	0.482587	
mm_133901.1	chr16	97548512	97548712	+	1	NA	NA	NA	12529	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.000000	0.368159	
mm_32925.1	chr4	119195240	119195440	+	1	NA	NA	NA	30	NM_024462	69216	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	0.130000	0.805970	
mm_91226.1	chr10	22068442	22068642	-	1	NA	NA	NA	-463	NM_053264	114671	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	0.015000	0.482587	
mm_106228.1	chr11	117265944	117266144	-	1	NA	NA	NA	-202	NM_001113487	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.070000	0.631841	54(TCGCATATAAGC,-,0.00)
mm_41338.1	chr5	90497127	90497327	+	1	NA	NA	NA	6513	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.010000	0.497512	
mm_6867.1	chr1	84279837	84280037	-	1	NA	NA	NA	4708	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.010000	0.467662	
mm_30868.1	chr4	32051621	32051821	+	1	NA	NA	NA	87614	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.030000	0.577114	-28(GCCTTTTAAGAC,-,0.00),-27(CCTTTTAAGACC,+,0.00)
mm_16879.1	chr2	12877684	12877884	-	1	NA	NA	NA	-46257	NM_008961	19212	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0.015000	0.487562	
mm_77318.1	chr8	117801868	117802068	-	1	NA	NA	NA	-39	NM_026758	68533	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	0.115000	0.631841	
mm_150574.1	chr19	40190927	40191127	+	1	NA	NA	NA	-3741	NM_145499	226105	Mm.29119	NM_145499	ENSMUSG00000060613	Cyp2c70	-	cytochrome P450, family 2, subfamily c, polypeptide 70	protein-coding	0.010000	0.462687	
mm_84768.1	chr9	75611221	75611421	-	1	NA	NA	NA	4	NM_016711	50876	Mm.291880	NM_016711	ENSMUSG00000032186	Tmod2	N-Tmod|NTMOD	tropomodulin 2	protein-coding	0.085000	0.666667	
mm_41103.1	chr5	87774463	87774663	+	1	NA	NA	NA	113	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.005000	0.298507	67(CCTTTTATAGCA,+,0.00)
mm_162649.1	chr1	195176591	195176791	-	1	NA	NA	NA	24	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0.050000	0.611940	-60(TGCTATTTAAGG,-,0.00)
mm_89674.1	chr10	97513506	97513706	+	1	NA	NA	NA	31275	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.005000	0.447761	
mm_70563.1	chr8	13105562	13105762	+	1	NA	NA	NA	-59	NM_146207	99375	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	0.175000	0.805970	
mm_95205.1	chr11	43528713	43528913	+	1	NA	NA	NA	64	NM_001045530	380694	Mm.247595	NM_001045530	ENSMUSG00000044707	Ccnjl	Gm877	cyclin J-like	protein-coding	0.160000	0.796020	
mm_87992.1	chr10	65643754	65643954	+	1	NA	NA	NA	480210	NR_038039	69433	Mm.23366	NR_038039	ENSMUSG00000100000	1700023F02Rik	AV205046	RIKEN cDNA 1700023F02 gene	ncRNA	0.050000	0.572139	
mm_60357.1	chr7	44428514	44428714	+	1	NA	NA	NA	-13873	NM_198250	272381	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	0.010000	0.606965	
mm_72252.1	chr8	75094368	75094568	+	1	NA	NA	NA	850	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.005000	0.462687	
mm_119919.1	chr14	54957293	54957493	+	1	NA	NA	NA	-8251	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.015000	0.552239	
mm_86133.1	chr9	116384198	116384398	-	1	NA	NA	NA	-208935	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.015000	0.522388	
mm_157288.1	chrX	20861325	20861525	-	1	NA	NA	NA	1757	NR_049190	100885829		NR_049190	ENSMUSG00000093408	Mir5617	Gm25192|mir-5617|mmu-mir-5617	microRNA 5617	ncRNA	0.015000	0.532338	
mm_80482.1	chr9	78230554	78230754	+	1	NA	NA	NA	-15	NM_008181	14857	Mm.467426	NM_008181	ENSMUSG00000074183	Gsta1	Gst2-1|OTTMUSG00000031890	glutathione S-transferase, alpha 1 (Ya)	protein-coding	0.005000	0.497512	
mm_19587.1	chr2	101882933	101883133	-	1	NA	NA	NA	-3229	NM_029635	76501	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0.015000	0.537313	
mm_134792.1	chr16	24090012	24090212	-	1	NA	NA	NA	-101500	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.000000	0.507463	
mm_130350.1	chr15	97749907	97750107	-	1	NA	NA	NA	17659	NM_001177810	223864	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.020000	0.601990	
mm_154402.1	chrM	14023	14223	+	1	NA	NA	NA	NA	NA									0.015000	0.313433	
mm_101452.1	chr11	30212838	30213038	-	1	NA	NA	NA	6834	NM_175836	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.000000	0.462687	
mm_95560.1	chr11	52336163	52336363	+	1	NA	NA	NA	-24599	NM_011694	22333	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.015000	0.407960	1(GTGTTGAAAAGG,-,0.00)
mm_72452.1	chr8	83166044	83166244	+	1	NA	NA	NA	792	NM_027758	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.095000	0.676617	
mm_24767.1	chr3	95499794	95499994	+	1	NA	NA	NA	684	NM_007802	13038	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.025000	0.452736	
mm_137874.1	chr17	31442846	31443046	+	1	NA	NA	NA	56712	NM_001163748	18585	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	0.025000	0.577114	
mm_82985.1	chr9	36529355	36529555	-	1	NA	NA	NA	12508	NM_001033783	434396	Mm.118836	NM_001033783	ENSMUSG00000074448	Gm5615	EG434396|Pate-H|Pate9	predicted gene 5615	protein-coding	0.010000	0.477612	
mm_35908.1	chr4	49747165	49747365	-	1	NA	NA	NA	-65282	NM_001004025	19059	Mm.46125	NM_001004025	ENSMUSG00000028310	Ppp3r2	CaNB2|CnB2	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)	protein-coding	0.040000	0.388060	
mm_38174.1	chr4	135260265	135260465	-	1	NA	NA	NA	12395	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.000000	0.343284	
mm_120999.1	chr14	79451845	79452045	+	1	NA	NA	NA	110	NM_001034882	432879	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	0.130000	0.701493	
mm_44831.1	chr5	33996442	33996642	-	1	NA	NA	NA	558	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.125000	0.731343	
mm_36941.1	chr4	108780600	108780800	-	1	NA	NA	NA	388	NM_001347163	230597	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	0.185000	0.805970	
mm_113285.1	chr13	30145914	30146114	+	1	NA	NA	NA	9524	NM_153546	218121	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	0.005000	0.293532	
mm_62807.1	chr7	112933770	112933970	+	1	NA	NA	NA	-20092	NM_175279	78748	Mm.349943	NM_175279	ENSMUSG00000098132	Rassf10	4632411J06Rik	Ras association (RalGDS/AF-6) domain family (N-terminal) member 10	protein-coding	0.025000	0.507463	
mm_97396.1	chr11	77837907	77838107	+	1	NA	NA	NA	36709	NM_001291215	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.015000	0.567164	
mm_75453.1	chr8	47711567	47711767	-	1	NA	NA	NA	2264	NM_172407	70925	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.025000	0.467662	
mm_65877.1	chr7	29555493	29555693	-	1	NA	NA	NA	-50133	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.015000	0.477612	-30(GCTTAAAGGCGC,+,0.00)
mm_138876.1	chr17	43270253	43270453	+	1	NA	NA	NA	6	NM_133776	77596	Mm.159950	NM_133776	ENSMUSG00000041293	Adgrf1	5031409J19Rik|Gpr110|KPG_009	adhesion G protein-coupled receptor F1	protein-coding	0.015000	0.592040	
mm_133792.1	chr16	95258255	95258455	+	1	NA	NA	NA	797	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.010000	0.527363	
mm_99519.1	chr11	103133246	103133446	+	1	NA	NA	NA	7	NM_001130516	71059	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0.030000	0.601990	
mm_138764.1	chr17	37053620	37053820	+	1	NA	NA	NA	7754	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.010000	0.477612	
mm_76276.1	chr8	84182062	84182262	-	1	NA	NA	NA	-3201	NR_029821	723819		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	0.000000	0.422886	
mm_137979.1	chr17	33584242	33584442	+	1	NA	NA	NA	28635	NM_053214	17916	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0.000000	0.482587	
mm_58860.1	chr7	16906414	16906614	+	1	NA	NA	NA	24	NM_008967	19222	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0.020000	0.572139	
mm_29260.1	chr3	107238582	107238782	-	1	NA	NA	NA	1025	NM_001044382	246691	Mm.490697	NM_001044382	ENSMUSG00000070368	Prok1	EG-VEGF	prokineticin 1	protein-coding	0.025000	0.482587	
mm_31234.1	chr4	44664329	44664529	+	1	NA	NA	NA	-38371	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0.165000	0.741294	
mm_21924.1	chr2	166996004	166996204	-	1	NA	NA	NA	195	NM_011490	20853	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen (RNA binding protein) homolog 1 (Drosophila)	protein-coding	0.110000	0.716418	
mm_26945.1	chr3	20266395	20266595	-	1	NA	NA	NA	9238	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.015000	0.447761	
mm_103787.1	chr11	82828933	82829133	-	1	NA	NA	NA	10	NM_026097	67338	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.015000	0.452736	
mm_75038.1	chr8	32610595	32610795	-	1	NA	NA	NA	339331	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding	0.010000	0.338308	-70(GGCTTTTTGAGG,-,0.00)
mm_117846.1	chr13	98694713	98694913	-	1	NA	NA	NA	18	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.060000	0.671642	
mm_30117.1	chr3	139885921	139886121	-	1	NA	NA	NA	-142228	NR_105798	102465198		NR_105798	ENSMUSG00000099169	Mir7j	Gm27716|Mirlet7j|mmu-let-7j	microRNA 7j	ncRNA	0.010000	0.412935	
mm_141629.1	chr17	32917124	32917324	-	1	NA	NA	NA	105	NM_001204334	64385	Mm.486449	NM_022434	ENSMUSG00000024292	Cyp4f14	1300014O15Rik|cyp4f-14	cytochrome P450, family 4, subfamily f, polypeptide 14	protein-coding	0.000000	0.527363	
mm_72953.1	chr8	92357881	92358081	+	1	NA	NA	NA	185	NM_018826	54352	Mm.101153	NM_018826	ENSMUSG00000031737	Irx5	-	Iroquois related homeobox 5 (Drosophila)	protein-coding	0.110000	0.741294	
mm_82687.1	chr9	22298740	22298940	-	1	NA	NA	NA	8798	NM_145612	235050	Mm.306038	NM_145612	ENSMUSG00000066829	Zfp810	BC005471	zinc finger protein 810	protein-coding	0.015000	0.442786	
mm_21617.1	chr2	164275945	164276145	-	1	NA	NA	NA	2262	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.005000	0.422886	
mm_9712.1	chr1	179802410	179802610	-	1	NA	NA	NA	1505	NM_026375	226747	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.035000	0.393035	46(TTTTTAATAGAC,+,0.00),69(TTTTTTAAAGAG,+,0.00)
mm_35781.1	chr4	46413376	46413576	-	1	NA	NA	NA	-9293	NM_053149	93966	Mm.25793	NM_053149	ENSMUSG00000028332	Hemgn	4921524M03Rik|AI317176|EDAG|Hgn|mNDR	hemogen	protein-coding	0.020000	0.522388	
mm_84214.1	chr9	61694360	61694560	-	1	NA	NA	NA	220050	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.040000	0.557214	
mm_64372.1	chr7	142442272	142442472	+	1	NA	NA	NA	-96	NM_009405	21953	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	0.025000	0.587065	
mm_26171.1	chr3	138286763	138286963	+	1	NA	NA	NA	9218	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.025000	0.517413	
mm_117915.1	chr13	99431508	99431708	-	1	NA	NA	NA	-18782	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.020000	0.522388	
mm_129166.1	chr15	76247537	76247737	-	1	NA	NA	NA	-554	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.035000	0.611940	
mm_40175.1	chr5	35958782	35958982	+	1	NA	NA	NA	65563	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	0.005000	0.537313	
mm_24519.1	chr3	92932879	92933079	+	1	NA	NA	NA	0	NM_025501	66344	Mm.443421	NM_025501	ENSMUSG00000042031	Lce3b	2310007F04Rik|Sprrl6A	late cornified envelope 3B	protein-coding	0.010000	0.497512	
mm_33088.1	chr4	124659581	124659781	+	1	NA	NA	NA	2035	NM_011141	18991	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0.075000	0.557214	85(GTGTATAAAAGC,-,0.00)
mm_96737.1	chr11	69766427	69766627	+	1	NA	NA	NA	615	NM_029348	75580	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0.070000	0.691542	
mm_132357.1	chr16	34651111	34651311	+	1	NA	NA	NA	0	NM_030744	76378	Mm.23515	NM_030744	ENSMUSG00000022832	Ropn1	1700008N21Rik|ODF6|RHPNAP1|Rppn|ropporin	ropporin, rhophilin associated protein 1	protein-coding	0.005000	0.457711	
mm_138499.1	chr17	35202589	35202789	+	1	NA	NA	NA	-682	NM_001278601	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.015000	0.567164	
mm_97440.1	chr11	78178638	78178838	+	1	NA	NA	NA	80	NM_026708	68385	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	0.115000	0.731343	
mm_75200.1	chr8	39118907	39119107	-	1	NA	NA	NA	113140	NM_030254	80286	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	0.000000	0.502488	
mm_74871.1	chr8	25016813	25017013	-	1	NA	NA	NA	9	NM_001270996	11502	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	0.130000	0.756219	
mm_166877.1	chr7	25412870	25413070	-	1	NA	NA	NA	-84	NM_153576	232983	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0.010000	0.462687	
mm_95105.1	chr11	34048878	34049078	+	1	NA	NA	NA	1777	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.015000	0.457711	
mm_54461.1	chr6	34875559	34875759	-	1	NA	NA	NA	2406	NM_199145	78412	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.025000	0.587065	
mm_143065.1	chr17	57021218	57021418	-	1	NA	NA	NA	-10030	NM_133801	98053	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0.005000	0.383085	-97(CTTTTTAAAAGG,+,0.00),-97(CTTTTTAAAAGG,-,0.00)
mm_130697.1	chr15	100683204	100683404	-	1	NA	NA	NA	4616	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.000000	0.402985	
mm_21103.1	chr2	153241307	153241507	-	1	NA	NA	NA	-49	NM_018807	54711	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	0.165000	0.800995	
mm_137798.1	chr17	29691169	29691369	+	1	NA	NA	NA	25748	NM_026782	68597	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	0.025000	0.522388	
mm_129164.1	chr15	76243325	76243525	-	1	NA	NA	NA	15	NM_001163576	671535	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0.000000	0.522388	
mm_135546.1	chr16	49799696	49799896	-	1	NA	NA	NA	-55858	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.015000	0.422886	
mm_13242.1	chr2	98662647	98662847	+	1	NA	NA	NA	1195090	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.025000	0.333333	
mm_16577.1	chr2	3498006	3498206	-	1	NA	NA	NA	14708	NR_103465	50497	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	0.025000	0.472637	
mm_129521.1	chr15	79156440	79156640	-	1	NA	NA	NA	7950	NM_011437	20665	Mm.276739	NM_011437	ENSMUSG00000033006	Sox10	Dom|Sox21|gt	SRY (sex determining region Y)-box 10	protein-coding	0.040000	0.601990	
mm_164235.1	chr15	91633289	91633489	+	1	NA	NA	NA	-39835	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.025000	0.432836	
mm_21872.1	chr2	165983000	165983200	-	1	NA	NA	NA	-9537	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.010000	0.502488	66(GTTCATTAAAGG,-,0.00)
mm_35703.1	chr4	44167674	44167874	-	1	NA	NA	NA	-236	NM_175201	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.130000	0.716418	
mm_12724.1	chr2	78369888	78370088	+	1	NA	NA	NA	132441	NM_177843	329436	Mm.235448	NM_177843		Gm14461	A830093M07|OTTMUSG00000016703	predicted gene 14461	protein-coding	0.000000	0.218905	
mm_27926.1	chr3	79550976	79551176	-	1	NA	NA	NA	16603	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.010000	0.467662	
mm_53245.1	chr6	127577838	127578038	+	1	NA	NA	NA	-37	NM_001033464	381812	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0.015000	0.542289	-17(GCTTATCAAGGC,+,0.00)
mm_60454.1	chr7	44477465	44477665	+	1	NA	NA	NA	-6952	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.010000	0.383085	
mm_1944.1	chr1	86303396	86303596	+	1	NA	NA	NA	275	NM_145222	227327	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.095000	0.706468	
mm_170815.1	chr2	176282592	176282792	-	1	NA	NA	NA	-7251	NR_040256	626877	Mm.490744	NR_040256		Gm14405	OTTMUSG00000016573	predicted gene 14405	pseudo	0.010000	0.487562	
mm_31731.1	chr4	62979596	62979796	+	1	NA	NA	NA	14122	NM_028326	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.000000	0.492537	
mm_10082.1	chr1	195176616	195176816	-	1	NA	NA	NA	-1	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0.045000	0.616915	-35(TGCTATTTAAGG,-,0.00)
mm_120807.1	chr14	74946865	74947065	+	1	NA	NA	NA	912	NM_001252132	380916	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.095000	0.686567	
mm_161669.1	chr17	13131708	13131908	-	1	NA	NA	NA	-17	NM_199252	381058	Mm.390935	NM_199252	ENSMUSG00000067049	Unc93a	Unc93l|unc-93A	unc-93 homolog A (C. elegans)	protein-coding	0.005000	0.562189	
mm_65856.1	chr7	29288182	29288382	-	1	NA	NA	NA	-1038	NM_026731	68458	Mm.2343	NM_026731	ENSMUSG00000037166	Ppp1r14a	1110001M11Rik|Cpi17	protein phosphatase 1, regulatory (inhibitor) subunit 14A	protein-coding	0.010000	0.547264	
mm_38172.1	chr4	135226023	135226223	-	1	NA	NA	NA	46637	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.030000	0.487562	-76(CCTTTTAGAGCG,+,0.00),17(CCATTTATAACC,+,0.00)
mm_153889.1	chr19	46962229	46962429	-	1	NA	NA	NA	22	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.165000	0.810945	
mm_98502.1	chr11	94951932	94952132	+	1	NA	NA	NA	-15561	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.005000	0.522388	
mm_153236.1	chr19	36111976	36112176	-	1	NA	NA	NA	7768	NM_013468	107765	Mm.10279	NM_013468	ENSMUSG00000024803	Ankrd1	Alrp|CARP|Crap|MARP1	ankyrin repeat domain 1 (cardiac muscle)	protein-coding	0.030000	0.402985	
mm_90787.1	chr10	7054849	7055049	-	1	NA	NA	NA	-31764	NM_001033391	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.010000	0.447761	
mm_69264.1	chr7	127894583	127894783	-	1	NA	NA	NA	934	NM_178600	27973	Mm.29703	NM_178600	ENSMUSG00000096145	Vkorc1	D7Wsu86e	vitamin K epoxide reductase complex, subunit 1	protein-coding	0.005000	0.507463	
mm_136982.1	chr17	16951473	16951673	+	1	NA	NA	NA	-112530	NM_001005358	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	0.020000	0.507463	
mm_30920.1	chr4	32672453	32672653	+	1	NA	NA	NA	15434	NM_001081392	100019	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	0.005000	0.432836	
mm_17759.1	chr2	32775507	32775707	-	1	NA	NA	NA	26	NM_177384	338348	Mm.475130	NM_177384	ENSMUSG00000039021	Ttc16	1200002K10Rik	tetratricopeptide repeat domain 16	protein-coding	0.095000	0.646766	
mm_53887.1	chr6	3376795	3376995	-	1	NA	NA	NA	22676	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.005000	0.378109	
mm_52435.1	chr6	113600661	113600861	+	1	NA	NA	NA	-46	NM_027633	70979	Mm.72959	NM_027633	ENSMUSG00000033963	Fancd2os	4931417G12Rik	Fancd2 opposite strand	protein-coding	0.035000	0.601990	
mm_116961.1	chr13	56142583	56142783	-	1	NA	NA	NA	-7133	NM_001159513	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.020000	0.572139	
mm_7076.1	chr1	88264742	88264942	-	1	NA	NA	NA	4566	NR_040291	78605	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.005000	0.477612	
mm_107786.1	chr12	61571343	61571543	+	1	NA	NA	NA	48276	NM_001310586	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.000000	0.313433	
mm_23120.1	chr3	37643635	37643835	+	1	NA	NA	NA	3788	NM_001305442	24063	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty homolog 1 (Drosophila)	protein-coding	0.040000	0.567164	
mm_139959.1	chr17	71569729	71569929	+	1	NA	NA	NA	17768	NM_029254	70891	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	0.010000	0.393035	
mm_77945.1	chr9	7358294	7358494	+	1	NA	NA	NA	11020	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.358209	
mm_81500.1	chr9	110034379	110034579	+	1	NA	NA	NA	-17542	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.010000	0.512438	
mm_137087.1	chr17	21488983	21489183	+	1	NA	NA	NA	95	NM_013843	24132	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	0.055000	0.567164	
mm_162215.1	chrX	136779739	136779939	-	1	NA	NA	NA	-118	NM_010297	14657	Mm.215168	NM_010297	ENSMUSG00000018595	Glra4	-	glycine receptor, alpha 4 subunit	protein-coding	0.010000	0.502488	
mm_81949.1	chr9	120521684	120521884	+	1	NA	NA	NA	-18034	NM_178676	215446	Mm.76648	NM_178676	ENSMUSG00000041608	Entpd3	Cd39l3|HB6|NTPDase-3	ectonucleoside triphosphate diphosphohydrolase 3	protein-coding	0.010000	0.472637	
mm_41343.1	chr5	90499573	90499773	+	1	NA	NA	NA	8959	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.010000	0.422886	
mm_161930.1	chr18	80974501	80974701	-	1	NA	NA	NA	11977	NM_178280	20689	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	sal-like 3 (Drosophila)	protein-coding	0.060000	0.587065	
mm_94990.1	chr11	31871316	31871516	+	1	NA	NA	NA	476	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.055000	0.636816	
mm_759.1	chr1	43934659	43934859	+	1	NA	NA	NA	765	NM_009418	22019	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.025000	0.328358	38(GGCCTTATAAAA,-,0.00),40(CCTTATAAAATG,+,0.00)
mm_68860.1	chr7	126412118	126412318	-	1	NA	NA	NA	2652	NM_009844	12478	Mm.4360	NM_009844	ENSMUSG00000030724	Cd19	AW495831	CD19 antigen	protein-coding	0.010000	0.542289	
mm_105069.1	chr11	100738027	100738227	-	1	NA	NA	NA	88	NM_024456	19345	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0.070000	0.686567	
mm_105624.1	chr11	106789345	106789545	-	1	NA	NA	NA	193	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.075000	0.636816	
mm_61181.1	chr7	61732658	61732858	+	1	NA	NA	NA	2844	NR_037284	100526541		NR_037284	ENSMUSG00000077869	Mir344e	mir-344e|mmu-mir-344e	microRNA 344e	ncRNA	0.010000	0.502488	
mm_162586.1	chr1	180848603	180848803	-	1	NA	NA	NA	-2448	NM_145943	208768	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.020000	0.542289	
mm_145091.1	chr18	42553310	42553510	+	1	NA	NA	NA	26242	NM_181543	240239	Mm.186779	NM_181543	ENSMUSG00000042816	Gpr151	C130082O03Rik|GalRL|PGR7|nGPCR-2037	G protein-coupled receptor 151	protein-coding	0.005000	0.358209	
mm_147574.1	chr18	55939420	55939620	-	1	NA	NA	NA	-492612	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.020000	0.368159	
mm_29096.1	chr3	104791954	104792154	-	1	NA	NA	NA	3020	NM_007484	11853	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0.025000	0.502488	
mm_140864.1	chr17	23771395	23771595	-	1	NA	NA	NA	96	NM_153791	224613	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	0.145000	0.781095	
mm_137308.1	chr17	24878145	24878345	+	1	NA	NA	NA	-525	NM_008340	16005	Mm.3135	NM_008340	ENSMUSG00000046070	Igfals	ALS|Albs|mKIAA4111	insulin-like growth factor binding protein, acid labile subunit	protein-coding	0.020000	0.587065	
mm_101482.1	chr11	30986249	30986449	-	1	NA	NA	NA	16	NM_026527	68044	Mm.32656	NM_026527	ENSMUSG00000020309	Chac2	-	ChaC, cation transport regulator 2	protein-coding	0.050000	0.597015	
mm_110134.1	chr12	26447084	26447284	-	1	NA	NA	NA	9268	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.373134	
mm_108239.1	chr12	77467224	77467424	+	1	NA	NA	NA	57183	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.000000	0.318408	
mm_141917.1	chr17	34999343	34999543	-	1	NA	NA	NA	1303	NM_033075	110956	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0.015000	0.462687	
mm_12502.1	chr2	71873161	71873361	+	1	NA	NA	NA	37	NM_172665	228026	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.135000	0.771144	
mm_100610.1	chr11	121434868	121435068	+	1	NA	NA	NA	15	NM_022014	63828	Mm.266448	NM_022014	ENSMUSG00000025175	Fn3k	2310074G21Rik	fructosamine 3 kinase	protein-coding	0.075000	0.656716	
mm_111954.1	chr12	109545802	109546002	-	1	NA	NA	NA	504	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.010000	0.412935	
mm_126408.1	chr15	80255401	80255601	+	1	NA	NA	NA	317	NM_009716	11911	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	0.080000	0.626866	-36(GGCTATAAAGGG,-,0.00),84(GCGTATTAGAGG,-,0.00)
mm_12095.1	chr2	60842297	60842497	+	1	NA	NA	NA	39041	NM_001141932	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.005000	0.552239	
mm_107347.1	chr12	32820233	32820433	+	1	NA	NA	NA	-2	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.145000	0.800995	
mm_124732.1	chr15	6580578	6580778	+	1	NA	NA	NA	831	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.025000	0.527363	
mm_146595.1	chr18	9449497	9449697	-	1	NA	NA	NA	553	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.110000	0.666667	
mm_66330.1	chr7	42735550	42735750	-	1	NA	NA	NA	-42932	NM_001008427	434179	Mm.284947	NM_001008427	ENSMUSG00000069727	Zfp975	EG434179|Gm5595|mszf88	zinc finger protein 975	protein-coding	0.000000	0.288557	
mm_108981.1	chr12	102743880	102744080	+	1	NA	NA	NA	220	NM_177140	320351	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	0.110000	0.706468	
mm_112661.1	chr13	16026938	16027138	+	1	NA	NA	NA	15187	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.020000	0.497512	
mm_164925.1	chr18	77948752	77948952	+	1	NA	NA	NA	10385	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.025000	0.477612	
mm_100552.1	chr11	120721906	120722106	+	1	NA	NA	NA	538	NM_133223	170758	Mm.34008	NM_133223	ENSMUSG00000018012	Rac3	Rac1B	RAS-related C3 botulinum substrate 3	protein-coding	0.065000	0.626866	
mm_90019.1	chr10	115383834	115384034	+	1	NA	NA	NA	501	NM_025780	66816	Mm.32314	NM_025780	ENSMUSG00000020137	Thap2	2900040O07Rik|9030625G08Rik|AI450385|AI649097	THAP domain containing, apoptosis associated protein 2	protein-coding	0.015000	0.313433	
mm_39481.1	chr5	20881998	20882198	+	1	NA	NA	NA	26	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.170000	0.776119	
mm_30377.1	chr3	152240949	152241149	-	1	NA	NA	NA	25271	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.005000	0.482587	
mm_71070.1	chr8	34146280	34146480	+	1	NA	NA	NA	359	NM_026609	68192	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	0.065000	0.572139	-22(CACCTTAAAAAC,-,0.00),-20(CCTTAAAAACAC,+,0.00)
mm_147636.1	chr18	60238628	60238828	-	1	NA	NA	NA	26651	NM_001033767	240327	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.005000	0.373134	-79(TCCTCTAAAGGG,-,0.00)
mm_110101.1	chr12	25396760	25396960	-	1	NA	NA	NA	267686	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.000000	0.467662	
mm_53027.1	chr6	124477132	124477332	+	1	NA	NA	NA	-12448	NM_153508	232370	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.010000	0.432836	-7(TTTTTTAAAGAC,+,0.00)
mm_148622.1	chr19	5424930	5425130	+	1	NA	NA	NA	-51	NM_001291080	66556	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	0.110000	0.726368	
mm_81913.1	chr9	120094832	120095032	+	1	NA	NA	NA	2799	NM_007720	12776	Mm.442098	NM_007720	ENSMUSG00000042262	Ccr8	C-C|C-C CKR-8|CC-CKR-8|CCR-8|CKR-8|Cmkbr8|mCCR8	chemokine (C-C motif) receptor 8	protein-coding	0.015000	0.562189	
mm_162150.1	chrX	76264340	76264540	+	1	NA	NA	NA	134	NM_001013760	238829	Mm.292319	NM_001013760	ENSMUSG00000071738	Cldn34b3	EG238829|Gm4937	claudin 34B3	protein-coding	0.005000	0.383085	
mm_12613.1	chr2	74691791	74691991	+	1	NA	NA	NA	0	NM_013554	15430	Mm.24420	NM_013554	ENSMUSG00000050368	Hoxd10	AI385591|AI874987|Hox-4.5|Hox-5.3	homeobox D10	protein-coding	0.045000	0.537313	
mm_126371.1	chr15	80133419	80133619	+	1	NA	NA	NA	365	NM_025609	66513	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	0.100000	0.572139	31(GCGTTTATAAGC,-,0.00)
mm_72281.1	chr8	75100281	75100481	+	1	NA	NA	NA	6763	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.015000	0.427861	
mm_20201.1	chr2	125088575	125088775	-	1	NA	NA	NA	20548	NM_175034	317750	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0.000000	0.293532	
mm_122444.1	chr14	45285883	45286083	-	1	NA	NA	NA	32589	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.010000	0.432836	52(GTTTATATAAAG,-,0.00)
mm_48721.1	chr5	147322342	147322542	-	1	NA	NA	NA	-2	NM_001039678	231903	Mm.291286	NM_001039678	ENSMUSG00000075543	Urad	EG231903|Prhoxnb	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase	protein-coding	0.025000	0.532338	
mm_42572.1	chr5	117240357	117240557	+	1	NA	NA	NA	47107	NM_018858	23980	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	0.020000	0.427861	
mm_64962.1	chr7	16614683	16614883	-	1	NA	NA	NA	210	NM_172739	232906	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.160000	0.786070	
mm_47813.1	chr5	134184311	134184511	-	1	NA	NA	NA	373	NM_053266	114674	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0.135000	0.696517	
mm_111649.1	chr12	102743557	102743757	-	1	NA	NA	NA	4	NM_001142937	64113	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	0.130000	0.706468	
mm_85969.1	chr9	112156122	112156322	-	1	NA	NA	NA	29727	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.005000	0.507463	
mm_163135.1	chr11	79057512	79057712	-	1	NA	NA	NA	34015	NR_045873	790910	Mm.440410	NR_045873		Gm11201	ENSMUSG00000072637|OTTMUSG00000000169	predicted gene 11201	ncRNA	0.005000	0.507463	
mm_27946.1	chr3	79737807	79738007	-	1	NA	NA	NA	-113	NM_212452	381489	Mm.331086	NM_212452	ENSMUSG00000034009	Rxfp1	Gm1018|Lgr7	relaxin/insulin-like family peptide receptor 1	protein-coding	0.015000	0.487562	
mm_32942.1	chr4	119422762	119422962	+	1	NA	NA	NA	178	NM_001014900	332934	Mm.388911	NM_001014900	ENSMUSG00000070806	Zmynd12	AI414736	zinc finger, MYND domain containing 12	protein-coding	0.110000	0.701493	
mm_165819.1	chr3	146651237	146651437	-	1	NA	NA	NA	-20	NM_029144	75015	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.010000	0.477612	
mm_113129.1	chr13	24614131	24614331	+	1	NA	NA	NA	-375	NM_001286101	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.005000	0.368159	
mm_156438.1	chrX	142226686	142226886	+	1	NA	NA	NA	16	NM_001290532	237082	Mm.41899	NM_172782	ENSMUSG00000042271	Nxt2	6330587F24Rik|AI787442|P15-2	nuclear transport factor 2-like export factor 2	protein-coding	0.050000	0.407960	
mm_13539.1	chr2	110721409	110721609	+	1	NA	NA	NA	15	NM_172979	269328	Mm.32566	NM_172979	ENSMUSG00000050808	Muc15	4732460E09|D730046L02Rik|MUC-15	mucin 15	protein-coding	0.005000	0.512438	
mm_132641.1	chr16	40019263	40019463	+	1	NA	NA	NA	1117018	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.010000	0.263682	
mm_139454.1	chr17	55952621	55952821	+	1	NA	NA	NA	98	NM_015766	50498	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	0.005000	0.577114	
mm_101538.1	chr11	33513654	33513854	-	1	NA	NA	NA	-8	NM_023146	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.155000	0.786070	
mm_95902.1	chr11	58202479	58202679	+	1	NA	NA	NA	3023	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.010000	0.467662	
mm_131808.1	chr16	22918174	22918374	+	1	NA	NA	NA	-108	NM_001083905	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.015000	0.467662	74(AGATATAAAAGG,-,0.00)
mm_163366.1	chr12	33845420	33845620	+	1	NA	NA	NA	-82905	NM_033522	114712	Mm.204643	NM_033522	ENSMUSG00000046518	Ferd3l	Mnato3|N-twist|Nato|Nato3|Ntwist|Ptfb|bHLHa31|fer3	Fer3-like (Drosophila)	protein-coding	0.005000	0.328358	
mm_128153.1	chr15	32244491	32244691	-	1	NA	NA	NA	71	NR_038186	100616095	Mm.391938	NR_038186	ENSMUSG00000096956	Snhg18	0610007N19Rik|Snord123	small nucleolar RNA host gene 18	ncRNA	0.025000	0.606965	
mm_47178.1	chr5	120749594	120749794	-	1	NA	NA	NA	154	NM_145227	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.025000	0.537313	
mm_85204.1	chr9	96766779	96766979	-	1	NA	NA	NA	1317	NR_102296	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	0.000000	0.368159	
mm_67833.1	chr7	98361215	98361415	-	1	NA	NA	NA	13	NM_001168539	244152	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.115000	0.736318	
mm_21489.1	chr2	163331207	163331407	-	1	NA	NA	NA	66666	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	0.000000	0.402985	
mm_152023.1	chr19	6046890	6047090	-	1	NA	NA	NA	-155	NM_001164709	74126	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0.140000	0.681592	
mm_166621.1	chr6	72430339	72430539	+	1	NA	NA	NA	-8244	NR_046011	78108	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	0.000000	0.373134	-70(CCCCTTATAAGT,-,0.00),-68(CCTTATAAGTTC,+,0.00),0(CTTTTTCAAGAC,+,0.00)
mm_71160.1	chr8	40431803	40432003	+	1	NA	NA	NA	8088	NM_178395	70546	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik	zinc finger, DHHC domain containing 2	protein-coding	0.005000	0.447761	
mm_2663.1	chr1	125839866	125840066	+	1	NA	NA	NA	71421	NM_001311090	72585	Mm.490405	NM_145100	ENSMUSG00000026344	Lypd1	2700050C12Rik|AI853408|C530008O16Rik|Lynx2|Lypdc1	Ly6/Plaur domain containing 1	protein-coding	0.010000	0.562189	
mm_142523.1	chr17	46327868	46328068	-	1	NA	NA	NA	55	NM_001347396	224814	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0.090000	0.691542	
mm_128572.1	chr15	57695452	57695652	-	1	NA	NA	NA	885	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.075000	0.666667	
mm_15293.1	chr2	155382130	155382330	+	1	NA	NA	NA	374	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.065000	0.597015	
mm_167052.1	chr7	83882119	83882319	+	1	NA	NA	NA	2122	NM_030705	80889	Mm.272998	NM_030705	ENSMUSG00000070462	Mesdc1	AW061151	mesoderm development candidate 1	protein-coding	0.040000	0.582090	-35(TTCCCTTAAAGC,-,0.00)
mm_117938.1	chr13	99434487	99434687	-	1	NA	NA	NA	-21761	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.537313	
mm_95614.1	chr11	53515215	53515415	+	1	NA	NA	NA	-4421	NM_033144	20362	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0.015000	0.477612	
mm_65680.1	chr7	28338344	28338544	-	1	NA	NA	NA	275	NM_013676	20924	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0.095000	0.651741	
mm_141292.1	chr17	28074602	28074802	-	1	NA	NA	NA	5882	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.020000	0.562189	
mm_125253.1	chr15	35296001	35296201	+	1	NA	NA	NA	-11	NM_054049	107587	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0.110000	0.751244	
mm_75049.1	chr8	32884194	32884394	-	1	NA	NA	NA	65732	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding	0.080000	0.666667	
mm_26401.1	chr3	142603545	142603745	+	1	NA	NA	NA	8798	NM_010259	14468	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.000000	0.447761	
mm_151381.1	chr19	56287824	56288024	+	1	NA	NA	NA	12	NM_146101	226243	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0.020000	0.472637	
mm_127046.1	chr15	96642466	96642666	+	1	NA	NA	NA	-223	NM_001166456	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.100000	0.661692	
mm_73871.1	chr8	118970291	118970491	+	1	NA	NA	NA	-374147	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.010000	0.452736	
mm_71775.1	chr8	66470859	66471059	+	1	NA	NA	NA	15548	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.000000	0.343284	
mm_27786.1	chr3	75164934	75165134	-	1	NA	NA	NA	-21262	NM_172515	213234	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding	0.050000	0.592040	
mm_90183.1	chr10	119992867	119993067	+	1	NA	NA	NA	45	NR_102387	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding	0.000000	0.482587	
mm_135752.1	chr16	55974419	55974619	-	1	NA	NA	NA	98	NR_027965	66391	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	0.130000	0.741294	
mm_58656.1	chr7	6410124	6410324	+	1	NA	NA	NA	-4951	NM_001134752	100042450	Mm.416919	NM_001134752	ENSMUSG00000093536	Smim17	Gm16532	small integral membrane protein 17	protein-coding	0.070000	0.557214	
mm_171946.1	chr5	76103751	76103951	-	1	NA	NA	NA	-36422	NM_020611	57357	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	0.025000	0.547264	-43(CCTTTTATAAGT,+,0.00)
mm_115918.1	chr13	23533559	23533759	-	1	NA	NA	NA	-252	NM_175661	319173	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding	0.025000	0.432836	-62(GACTCTAAAAGG,-,0.00)
mm_53429.1	chr6	134043748	134043948	+	1	NA	NA	NA	8148	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.010000	0.427861	
mm_143361.1	chr17	67315546	67315746	-	1	NA	NA	NA	38813	NM_008984	19274	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.005000	0.452736	
mm_114774.1	chr13	88821582	88821782	+	1	NA	NA	NA	210	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.110000	0.716418	
mm_128657.1	chr15	59795672	59795872	-	1	NA	NA	NA	-813	NR_045076	100503021	Mm.402924	NR_045076		Gm19510	-	predicted gene, 19510	ncRNA	0.025000	0.477612	
mm_102122.1	chr11	53307556	53307756	-	1	NA	NA	NA	-7177	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.020000	0.492537	
mm_21543.1	chr2	163918871	163919071	-	1	NA	NA	NA	-288	NM_183023	241770	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	0.175000	0.835821	
mm_154110.1	chr19	57131257	57131457	-	1	NA	NA	NA	-12333	NM_001103178	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.005000	0.442786	
mm_120325.1	chr14	63143082	63143282	+	1	NA	NA	NA	20720	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.015000	0.492537	
mm_165930.1	chr4	63979754	63979954	+	1	NA	NA	NA	67161	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding	0.005000	0.477612	
mm_66447.1	chr7	44866195	44866395	-	1	NA	NA	NA	3493	NM_133949	84113	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0.015000	0.587065	-99(CCTTTTCTGGGC,+,0.00)
mm_47639.1	chr5	125327616	125327816	-	1	NA	NA	NA	13378	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.015000	0.547264	
mm_46467.1	chr5	105121754	105121954	-	1	NA	NA	NA	-11562	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.020000	0.517413	
mm_151616.1	chr19	3901987	3902187	-	1	NA	NA	NA	3143	NM_016921	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.025000	0.621891	
mm_168192.1	chr10	62879486	62879686	-	1	NA	NA	NA	428	NM_027384	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.030000	0.512438	
mm_126779.1	chr15	86194655	86194855	+	1	NA	NA	NA	-8614	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.065000	0.641791	-27(GAGTTTATAAGA,-,0.00)
mm_170626.1	chr19	7398996	7399196	-	1	NA	NA	NA	-16070	NM_001167831	68229	Mm.34766	NM_001033139	ENSMUSG00000024970	AI846148	1700105P06Rik	expressed sequence AI846148	protein-coding	0.090000	0.577114	
mm_124482.1	chr14	121698145	121698345	-	1	NA	NA	NA	172	NM_001347596	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.040000	0.572139	
mm_50525.1	chr6	49045213	49045413	+	1	NA	NA	NA	8795	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.030000	0.532338	
mm_104945.1	chr11	100120335	100120535	-	1	NA	NA	NA	142	NM_001313949	16663	Mm.4646	NM_010662	ENSMUSG00000044041	Krt13	CK13|K13|Krt-1.13|Krt1-13	keratin 13	protein-coding	0.010000	0.487562	-33(GGCTTTAAATGC,-,0.00)
mm_126688.1	chr15	84923346	84923546	+	1	NA	NA	NA	18	NM_016714	18141	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0.080000	0.601990	
mm_76928.1	chr8	105936878	105937078	-	1	NA	NA	NA	1414	NM_013640	19171	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0.040000	0.606965	
mm_113281.1	chr13	30136462	30136662	+	1	NA	NA	NA	72	NM_153546	218121	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	0.105000	0.751244	
mm_38800.1	chr4	148152027	148152227	-	1	NA	NA	NA	8	NM_001163707	50762	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	0.045000	0.611940	
mm_160302.1	chr7	139212858	139213058	+	1	NA	NA	NA	-30	NM_027164	76612	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	0.050000	0.646766	
mm_109163.1	chr12	108195604	108195804	+	1	NA	NA	NA	15966	NM_009832	12454	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	0.005000	0.577114	
mm_158192.1	chrX	104670899	104671099	-	1	NA	NA	NA	65	NM_175358	108672	Mm.30574	NM_175358	ENSMUSG00000033906	Zdhhc15	6030457O13Rik	zinc finger, DHHC domain containing 15	protein-coding	0.055000	0.686567	
mm_137068.1	chr17	20661895	20662095	+	1	NA	NA	NA	-25513	NM_134191	171225	Mm.377184	NM_134191	ENSMUSG00000042848	Vmn1r226	V1re2	vomeronasal 1 receptor 226	protein-coding	0.005000	0.393035	64(GTTTTTAAAGTT,+,0.00)
mm_99146.1	chr11	100545575	100545775	+	1	NA	NA	NA	43	NM_028918	74407	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0.065000	0.606965	
mm_82353.1	chr9	14354648	14354848	-	1	NA	NA	NA	26494	NM_028013	71946	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0.005000	0.368159	-98(CCCCTTATAAGG,-,0.00),-96(CCTTATAAGGAA,+,0.00)
mm_11728.1	chr2	37443206	37443406	+	1	NA	NA	NA	21	NM_146121	227800	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	0.100000	0.656716	
mm_142951.1	chr17	56109703	56109903	-	1	NA	NA	NA	-1	NM_020568	57435	Mm.12966	NM_020568	ENSMUSG00000002831	Plin4	S3-12|mKIAA1881	perilipin 4	protein-coding	0.030000	0.676617	-16(GACCCTATAAGG,-,0.00),-14(CCCTATAAGGCT,+,0.00)
mm_27500.1	chr3	55055385	55055585	-	1	NA	NA	NA	243	NR_040593	70970	Mm.251485	NR_040593	ENSMUSG00000106589	4931419H13Rik	-	RIKEN cDNA 4931419H13 gene	ncRNA	0.100000	0.701493	
mm_161633.1	chr16	89031560	89031760	+	1	NA	NA	NA	-39	NM_010672	16700	Mm.6973	NM_010672	ENSMUSG00000058172	Krtap6-1	HGTpII.1|HGTpII.2	keratin associated protein 6-1	protein-coding	0.010000	0.442786	-33(GAATATAAAAGG,-,0.00)
mm_127061.1	chr15	97361045	97361245	+	1	NA	NA	NA	-113858	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.025000	0.572139	-38(CACCTTATAAAC,-,0.00),-36(CCTTATAAACTC,+,0.00)
mm_91504.1	chr10	37136158	37136358	-	1	NA	NA	NA	2668	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.170000	0.815920	
mm_135685.1	chr16	52424612	52424812	-	1	NA	NA	NA	28369	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.263682	33(TGTTATATAAGC,-,0.00)
mm_138558.1	chr17	35267066	35267266	+	1	NA	NA	NA	4043	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.005000	0.522388	
mm_20300.1	chr2	127133831	127134031	-	1	NA	NA	NA	23	NM_144818	215387	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|HCAP-H|mKIAA0074	non-SMC condensin I complex, subunit H	protein-coding	0.105000	0.616915	
mm_112062.1	chr12	111966652	111966852	-	1	NA	NA	NA	225	NM_027360	70257	Mm.318	NM_027360	ENSMUSG00000021290	2010107E04Rik	9430003J03Rik|AU043134|AV124504|Mp68	RIKEN cDNA 2010107E04 gene	protein-coding	0.075000	0.671642	
mm_131290.1	chr16	11360987	11361187	+	1	NA	NA	NA	38183	NM_028964	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.010000	0.467662	
mm_37462.1	chr4	123472426	123472626	-	1	NA	NA	NA	-60615	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.010000	0.462687	-36(CTCCAGAAAAGG,-,0.00)
mm_6968.1	chr1	86215318	86215518	-	1	NA	NA	NA	60638	NM_001310702	78795	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.005000	0.492537	-33(GTGCATAAAAAC,-,0.00)
mm_160350.1	chr8	21095993	21096193	-	1	NA	NA	NA	-43	NM_001177482	634825	Mm.429748	NM_001177482	ENSMUSG00000061958	Gm14851	CRS1C-2|OTTMUSG00000018260	predicted gene 14851	protein-coding	0.000000	0.537313	-34(CCCTATAAATGC,+,0.00),-34(CCCTATAAATGC,-,0.00)
mm_152581.1	chr19	11602941	11603141	-	1	NA	NA	NA	1763	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.000000	0.472637	
mm_154071.1	chr19	56378168	56378368	-	1	NA	NA	NA	11770	NM_198059	18175	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	0.010000	0.363184	-7(TTTTTTAAAGCC,+,0.00),20(TCCTTTAGAGAG,+,0.00)
mm_95636.1	chr11	53707323	53707523	+	1	NA	NA	NA	-104	NM_009012	19360	Mm.4888	NM_009012	ENSMUSG00000020380	Rad50	Mrell|Rad50l	RAD50 double strand break repair protein	protein-coding	0.075000	0.587065	
mm_28647.1	chr3	95228198	95228398	-	1	NA	NA	NA	-126	NM_172395	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.075000	0.636816	
mm_103223.1	chr11	70656683	70656883	-	1	NA	NA	NA	-393	NM_001136062	13808	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.025000	0.601990	-88(CCTTTTAGAAAG,+,0.00)
mm_40548.1	chr5	58059391	58059591	+	1	NA	NA	NA	341410	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.000000	0.308458	
mm_2184.1	chr1	89015626	89015826	+	1	NA	NA	NA	-387	NR_040471	73475	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA	0.035000	0.547264	-34(GGATATAAAAAC,-,0.00)
mm_36788.1	chr4	103077558	103077758	-	1	NA	NA	NA	36641	NM_146254	242584	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	0.005000	0.348259	-95(CAGTATAAATGG,-,0.00)
mm_133006.1	chr16	55973721	55973921	+	1	NA	NA	NA	17	NM_173026	271377	Mm.282814	NM_173026	ENSMUSG00000022601	Zbtb11	9230110G02Rik|ZNF-U69274	zinc finger and BTB domain containing 11	protein-coding	0.135000	0.736318	
mm_100993.1	chr11	8446135	8446335	-	1	NA	NA	NA	218300	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.025000	0.542289	
mm_51202.1	chr6	71322710	71322910	+	1	NA	NA	NA	-2	NM_009858	12526	Mm.333148	NM_009858	ENSMUSG00000053044	Cd8b1	Cd8b|Ly-3|Ly-C|Lyt-3	CD8 antigen, beta chain 1	protein-coding	0.030000	0.592040	
mm_16376.1	chr2	178141830	178142030	+	1	NA	NA	NA	-3	NM_028806	74189	Mm.44413	NM_028806	ENSMUSG00000027525	Phactr3	1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224	phosphatase and actin regulator 3	protein-coding	0.015000	0.512438	
mm_16931.1	chr2	13793919	13794119	-	1	NA	NA	NA	-499	NM_145838	241230	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	0.035000	0.547264	
mm_58440.1	chr7	3298034	3298234	+	1	NA	NA	NA	5106	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.000000	0.502488	-47(GTCTCTTTAGGG,-,0.00),-45(CTCTTTAGGGGC,+,0.00)
mm_86174.1	chr9	119190135	119190335	-	1	NA	NA	NA	158	NM_001037749	382113	Mm.335525	NM_001037749	ENSMUSG00000070280	Slc22a14	Gm1128	solute carrier family 22 (organic cation transporter), member 14	protein-coding	0.015000	0.532338	
mm_43534.1	chr5	137307676	137307876	+	1	NA	NA	NA	-102	NM_001109909	83701	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	0.060000	0.537313	32(TACTTGAAAAGG,-,0.00)
mm_19357.1	chr2	91082178	91082378	-	1	NA	NA	NA	-11963	NM_001290765	68427	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.015000	0.587065	
mm_88138.1	chr10	69398887	69399087	+	1	NA	NA	NA	-46075	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.115000	0.721393	
mm_13266.1	chr2	98666710	98666910	+	1	NA	NA	NA	1199153	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.035000	0.368159	
mm_139977.1	chr17	71781224	71781424	+	1	NA	NA	NA	25	NM_001271483	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	0.030000	0.527363	
mm_88220.1	chr10	70359641	70359841	+	1	NA	NA	NA	-80927	NM_001143777	71721	Mm.477813	NM_024244	ENSMUSG00000043259	Fam13c	1200015N20Rik|C030038O19Rik|mKIAA1796	family with sequence similarity 13, member C	protein-coding	0.020000	0.442786	
mm_51492.1	chr6	83056961	83057161	+	1	NA	NA	NA	-783	NM_033606	93838	Mm.140332	NM_033606	ENSMUSG00000009145	Dqx1	2310066E11Rik	DEAQ RNA-dependent ATPase	protein-coding	0.010000	0.592040	
mm_99541.1	chr11	103208558	103208758	+	1	NA	NA	NA	-110	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.010000	0.562189	
mm_168474.1	chr11	48800227	48800427	+	1	NA	NA	NA	-33	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.055000	0.562189	
mm_117131.1	chr13	60936460	60936660	-	1	NA	NA	NA	6	NM_001145799	13024	Mm.482089	NM_007796	ENSMUSG00000044258	Ctla2a	Ctla-2a	cytotoxic T lymphocyte-associated protein 2 alpha	protein-coding	0.010000	0.532338	
mm_64873.1	chr7	14427776	14427976	-	1	NA	NA	NA	10675	NM_001199306	76971	Mm.290727	NM_175250	ENSMUSG00000030378	Sult2a8	2810007J24Rik	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8	protein-coding	0.015000	0.402985	
mm_152867.1	chr19	24224947	24225147	-	1	NA	NA	NA	-21	NM_011597	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.050000	0.606965	
mm_83594.1	chr9	48480600	48480800	-	1	NA	NA	NA	-89	NM_024233	104444	Mm.21911	NM_024233	ENSMUSG00000032026	Rexo2	1810038D15Rik|AW107347|Rex2|Sfn|Smfn	RNA exonuclease 2	protein-coding	0.085000	0.641791	
mm_9881.1	chr1	186117173	186117373	-	1	NA	NA	NA	37	NM_146106	226791	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0.110000	0.701493	
mm_135244.1	chr16	37384823	37385023	-	1	NA	NA	NA	35	NM_001114613	207227	Mm.80170	NM_172440	ENSMUSG00000022829	Stxbp5l	9430094L02|A830015P08Rik|LLGL4|T2dm1|t2md1|tomosyn-2	syntaxin binding protein 5-like	protein-coding	0.110000	0.756219	
mm_58104.1	chr6	137570946	137571146	-	1	NA	NA	NA	-37	NM_001271587	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.010000	0.477612	
mm_71468.1	chr8	46534630	46534830	+	1	NA	NA	NA	-17339	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.020000	0.442786	3(ACCCATAAAAGT,-,0.00)
mm_28234.1	chr3	88455600	88455800	-	1	NA	NA	NA	61	NM_013658	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.040000	0.631841	
mm_126769.1	chr15	86058670	86058870	+	1	NA	NA	NA	43	NM_001205353	223752	Mm.24442	NM_172611	ENSMUSG00000035900	Gramd4	9930016O13	GRAM domain containing 4	protein-coding	0.205000	0.845771	
mm_158697.1	chrX	162018771	162018971	-	1	NA	NA	NA	140570	NM_001081052	195727	Mm.336313	NM_001081052	ENSMUSG00000059493	Nhs	Gm389|Gm48|Nhs1|Xcat	Nance-Horan syndrome (human)	protein-coding	0.025000	0.547264	
mm_61892.1	chr7	90007641	90007841	+	1	NA	NA	NA	-21418	NR_110365	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	0.005000	0.442786	
mm_167744.1	chr9	108648224	108648424	+	1	NA	NA	NA	1056	NM_011790	23807	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.025000	0.462687	
mm_132527.1	chr16	37834396	37834596	+	1	NA	NA	NA	-33904	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.010000	0.383085	
mm_84118.1	chr9	58555004	58555204	-	1	NA	NA	NA	-14164	NM_133983	102657	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.145000	0.786070	
mm_51142.1	chr6	70518105	70518305	+	1	NA	NA	NA	273970	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.502488	
mm_13869.1	chr2	119799675	119799875	+	1	NA	NA	NA	261	NM_019392	22174	Mm.2901	NM_019392	ENSMUSG00000027298	Tyro3	AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1	TYRO3 protein tyrosine kinase 3	protein-coding	0.135000	0.810945	
mm_116389.1	chr13	41184695	41184895	-	1	NA	NA	NA	35367	NM_001311121	54326	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0.015000	0.432836	-45(GCATTTAAGCGG,+,0.00)
mm_45585.1	chr5	74068243	74068443	-	1	NA	NA	NA	68	NM_177561	69727	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.110000	0.666667	
mm_71581.1	chr8	54600689	54600889	+	1	NA	NA	NA	8	NM_133711	69281	Mm.45833	NM_133711	ENSMUSG00000031518	Spata4	1700001N01Rik|Srg2|TSARG2	spermatogenesis associated 4	protein-coding	0.050000	0.582090	
mm_14423.1	chr2	130490459	130490659	+	1	NA	NA	NA	40281	NM_001163688	19262	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	0.010000	0.388060	
mm_90659.1	chr10	128805460	128805660	+	1	NA	NA	NA	-116	NM_028873	74330	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	0.085000	0.686567	
mm_77272.1	chr8	116529346	116529546	-	1	NA	NA	NA	24431	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.000000	0.502488	
mm_55296.1	chr6	54751800	54752000	-	1	NA	NA	NA	-65016	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.005000	0.422886	
mm_42468.1	chr5	115453962	115454162	+	1	NA	NA	NA	-12204	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.015000	0.582090	65(CCCTTTAGGGCA,+,0.00)
mm_10876.1	chr2	25241815	25242015	+	1	NA	NA	NA	-1014	NM_176834	68846	Mm.24777	NM_176834	ENSMUSG00000044628	Rnf208	1110061N23Rik	ring finger protein 208	protein-coding	0.035000	0.487562	
mm_94365.1	chr11	5012541	5012741	+	1	NA	NA	NA	25817	NM_007454	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.005000	0.512438	
mm_171780.1	chr5	109996432	109996632	+	1	NA	NA	NA	5	NM_145563	69504	Mm.441438	NM_145563	ENSMUSG00000066613	Zfp932	2310001H12Rik|Znf431	zinc finger protein 932	protein-coding	0.035000	0.567164	
mm_19740.1	chr2	104742711	104742911	-	1	NA	NA	NA	-10	NM_144804	211896	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	0.135000	0.731343	
mm_7264.1	chr1	95313964	95314164	-	1	NA	NA	NA	436	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.095000	0.731343	
mm_74237.1	chr8	124575983	124576183	+	1	NA	NA	NA	-28	NM_023709	73647	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	0.020000	0.587065	
mm_71250.1	chr8	40915748	40915948	+	1	NA	NA	NA	-10385	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.010000	0.278607	50(TCCTTTTTAAAG,-,0.00),52(CTTTTTAAAGAT,+,0.00)
mm_69628.1	chr7	137322673	137322873	-	1	NA	NA	NA	-8328	NM_010096	13593	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.155000	0.781095	
mm_109168.1	chr12	108334150	108334350	+	1	NA	NA	NA	-131	NM_010010	13116	Mm.41911	NM_010010	ENSMUSG00000021259	Cyp46a1	Cyp46	cytochrome P450, family 46, subfamily a, polypeptide 1	protein-coding	0.115000	0.731343	
mm_127978.1	chr15	12419498	12419698	-	1	NA	NA	NA	98102	NM_025673	66629	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.015000	0.502488	18(CCTTTTAGATGC,+,0.00)
mm_127630.1	chr15	102469458	102469658	+	1	NA	NA	NA	-1074	NM_011042	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.005000	0.358209	-94(GCCTTTTTAAAG,-,0.00),-92(CTTTTTAAAGAC,+,0.00),-6(TTTTTTAAGGAG,+,0.00)
mm_162146.1	chrX	74645393	74645593	-	1	NA	NA	NA	142	NM_001099302	434797	Mm.391298	NM_001099302	ENSMUSG00000079534	Gm5640	EG434797	predicted gene 5640	protein-coding	0.015000	0.477612	
mm_27650.1	chr3	63964442	63964642	-	1	NA	NA	NA	191	NM_001331067	11416	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	0.080000	0.631841	
mm_80817.1	chr9	96630912	96631112	+	1	NA	NA	NA	491	NM_053268	114713	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.165000	0.825871	
mm_116826.1	chr13	54611186	54611386	-	1	NA	NA	NA	87	NM_028870	74325	Mm.290026	NM_028870	ENSMUSG00000047547	Cltb	2310046E19Rik|lcb	clathrin, light polypeptide (Lcb)	protein-coding	0.140000	0.751244	
mm_71195.1	chr8	40880014	40880214	+	1	NA	NA	NA	17747	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.000000	0.323383	
mm_12743.1	chr2	79122639	79122839	+	1	NA	NA	NA	-132687	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.000000	0.452736	
mm_157029.1	chrX	7922297	7922497	-	1	NA	NA	NA	2575	NM_013892	30052	Mm.4881	NM_013892	ENSMUSG00000039278	Pcsk1n	AI848336|KEP|PEN|PEN19|PEN20|Pan3|SAAS|SAASCT|bLEN|lLEN|proSAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding	0.110000	0.721393	
mm_93836.1	chr10	121586775	121586975	-	1	NA	NA	NA	-81	NM_019786	56480	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.145000	0.746269	
mm_101288.1	chr11	22001493	22001693	-	1	NA	NA	NA	58	NM_011023	18423	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.045000	0.502488	
mm_95291.1	chr11	45980258	45980458	+	1	NA	NA	NA	48	NM_173384	214105	Mm.66708	NM_173384	ENSMUSG00000040489	Sox30	-	SRY (sex determining region Y)-box 30	protein-coding	0.170000	0.820896	
mm_12037.1	chr2	58767181	58767381	+	1	NA	NA	NA	12097	NM_029692	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.005000	0.402985	
mm_51600.1	chr6	84008540	84008740	+	1	NA	NA	NA	42	NM_001077694	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.045000	0.582090	
mm_28894.1	chr3	97888820	97889020	-	1	NA	NA	NA	-213	NM_001289701	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.040000	0.537313	
mm_159726.1	chr5	38319299	38319499	+	1	NA	NA	NA	-110	NM_013503	13492	Mm.167154	NM_013503	ENSMUSG00000039358	Drd5	D5R|Drd-5|Drd1b|Gpcr1	dopamine receptor D5	protein-coding	0.145000	0.716418	
mm_133842.1	chr16	96200502	96200702	+	1	NA	NA	NA	132	NM_015825	50795	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0.050000	0.641791	
mm_144011.1	chr17	88403382	88403582	-	1	NA	NA	NA	-37230	NM_180974	14236	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.010000	0.472637	
mm_344.1	chr1	30949799	30949999	+	1	NA	NA	NA	-144	NM_011200	19243	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	0.145000	0.716418	
mm_37911.1	chr4	132757135	132757335	-	1	NA	NA	NA	-64	NM_133888	100340	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	0.045000	0.552239	
mm_44673.1	chr5	29735814	29736014	-	1	NA	NA	NA	16	NM_001127367	23950	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0.115000	0.606965	
mm_4012.1	chr1	165461115	165461315	+	1	NA	NA	NA	7	NM_027430	70456	Mm.195625	NM_027430	ENSMUSG00000026568	Mpc2	0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43	mitochondrial pyruvate carrier 2	protein-coding	0.070000	0.701493	
mm_34164.1	chr4	139622772	139622972	+	1	NA	NA	NA	-22	NM_175438	212647	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	0.020000	0.502488	
mm_116327.1	chr13	38031818	38032018	-	1	NA	NA	NA	5019	NM_027724	71213	Mm.314688	NM_027724	ENSMUSG00000044566	Cage1	4933427I01Rik|Ctag3	cancer antigen 1	protein-coding	0.010000	0.507463	-58(GGTTCTAAAAGA,-,0.00)
mm_160730.1	chr10	77042309	77042509	+	1	NA	NA	NA	9197	NM_031196	20509	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.030000	0.562189	
mm_156841.1	chrX	164373655	164373855	+	1	NA	NA	NA	233	NM_010216	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.005000	0.363184	
mm_71689.1	chr8	61280845	61281045	+	1	NA	NA	NA	7927	NR_045475	69279	Mm.417857	NR_045475	ENSMUSG00000099419	1700001D01Rik	-	RIKEN cDNA 1700001D01 gene	ncRNA	0.005000	0.318408	
mm_39624.1	chr5	24425171	24425371	+	1	NA	NA	NA	39	NM_009207	20535	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0.165000	0.786070	
mm_120986.1	chr14	79077186	79077386	+	1	NA	NA	NA	170081	NM_001033215	105590	Mm.486536	NM_001033215	ENSMUSG00000071262	Zfp957	AU017455	zinc finger protein 957	protein-coding	0.005000	0.402985	
mm_34793.1	chr4	154506842	154507042	+	1	NA	NA	NA	129425	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	0.050000	0.567164	
mm_117422.1	chr13	74363824	74364024	-	1	NA	NA	NA	76	NM_001033042	432779	Mm.324679	NM_001033042	ENSMUSG00000021579	Lrrc14b	AI595366	leucine rich repeat containing 14B	protein-coding	0.035000	0.542289	
mm_22576.1	chr3	10366813	10367013	+	1	NA	NA	NA	-60	NM_025519	66371	Mm.366147	NM_025519	ENSMUSG00000027536	Chmp4c	2010012P02Rik|2210015K02Rik|2310010I16Rik|Shax3|Snf7-3	charged multivesicular body protein 4C	protein-coding	0.070000	0.646766	
mm_111308.1	chr12	85815695	85815895	-	1	NA	NA	NA	8750	NM_021446	58520	Mm.143795	NM_021446	ENSMUSG00000021252	0610007P14Rik	1190004E09Rik|AU019315|C77855|ORF11	RIKEN cDNA 0610007P14 gene	protein-coding	0.005000	0.412935	
mm_104404.1	chr11	94521237	94521437	-	1	NA	NA	NA	165	NM_170671	104601	Mm.84725	NM_170671	ENSMUSG00000039110	Mycbpap	4932408B01Rik|AMAP-1|AW125474	MYCBP associated protein	protein-coding	0.105000	0.681592	
mm_90902.1	chr10	11045491	11045691	-	1	NA	NA	NA	36740	NM_001114333	14816	Mm.391904	NM_016976	ENSMUSG00000019828	Grm1	4930455H15Rik|ENSMUSG00000075319|Gm10828|Gprc1a|mGluR1|nmf373|rcw|wobl	glutamate receptor, metabotropic 1	protein-coding	0.040000	0.597015	
mm_70044.1	chr7	142577888	142578088	-	1	NA	NA	NA	158	NR_130974	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.030000	0.572139	
mm_80018.1	chr9	67891711	67891911	+	1	NA	NA	NA	51415	NM_177184	320528	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.000000	0.338308	
mm_82721.1	chr9	24773080	24773280	-	1	NA	NA	NA	1123	NM_020496	57246	Mm.31452	NM_020496	ENSMUSG00000031965	Tbx20	9430010M06Rik|AL022859|Tbx12	T-box 20	protein-coding	0.025000	0.353234	81(CTCTATAAAAAC,-,0.00)
mm_158478.1	chrX	141870399	141870599	-	1	NA	NA	NA	-145282	NM_010572	16370	Mm.261591	NM_010572	ENSMUSG00000054667	Irs4	IRS-4	insulin receptor substrate 4	protein-coding	0.030000	0.457711	
mm_105942.1	chr11	115188669	115188869	-	1	NA	NA	NA	1282	NM_001033393	320534	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	0.010000	0.502488	25(GTGTCTAAAAGG,-,0.00)
mm_139624.1	chr17	57362793	57362993	+	1	NA	NA	NA	4207	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.010000	0.427861	
mm_116236.1	chr13	33843278	33843478	-	1	NA	NA	NA	30	NM_001045535	435350	Mm.263418	NM_001045535	ENSMUSG00000069248	Serpinb6e	Gm11396|OTTMUSG00000000720|SPI3B|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6e	protein-coding	0.005000	0.552239	
mm_44472.1	chr5	23432618	23432818	-	1	NA	NA	NA	1635	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.010000	0.467662	
mm_99341.1	chr11	101469279	101469479	+	1	NA	NA	NA	1041	NM_009708	11858	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn	Rho family GTPase 2	protein-coding	0.005000	0.427861	
mm_53860.1	chr6	149309644	149309844	+	1	NA	NA	NA	330	NM_001289662	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.090000	0.616915	
mm_34837.1	chr4	155361573	155361773	+	1	NA	NA	NA	-245	NM_008860	18762	Mm.28561	NM_008860	ENSMUSG00000029053	Prkcz	AI098070|C80388|Pkcz|R74924|aPKCzeta|nPKC-zeta|zetaPKC	protein kinase C, zeta	protein-coding	0.085000	0.621891	
mm_35481.1	chr4	40853886	40854086	-	1	NA	NA	NA	551	NM_022305	14595	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0.105000	0.696517	
mm_161815.1	chr17	69207749	69207949	+	1	NA	NA	NA	51039	NM_013813	13823	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.015000	0.547264	
mm_139840.1	chr17	69262012	69262212	+	1	NA	NA	NA	15094	NR_045428	69750	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.020000	0.422886	
mm_44102.1	chr5	149364219	149364419	+	1	NA	NA	NA	-47487	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.015000	0.552239	
mm_30785.1	chr4	19575078	19575278	+	1	NA	NA	NA	112	NM_025476	66302	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	0.110000	0.671642	
mm_152003.1	chr19	5912743	5912943	-	1	NA	NA	NA	28	NM_011262	19708	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	0.085000	0.651741	
mm_61397.1	chr7	73375422	73375622	+	1	NA	NA	NA	2	NM_177740	244058	Mm.333943	NM_177740	ENSMUSG00000070509	Rgma	BC059072|C230063O06	repulsive guidance molecule family member A	protein-coding	0.145000	0.781095	
mm_89860.1	chr10	108162019	108162219	+	1	NA	NA	NA	-281	NM_027892	17931	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.140000	0.761194	
mm_19272.1	chr2	85086414	85086614	-	1	NA	NA	NA	-53	NR_040504	74687	Mm.66996	NR_040504	ENSMUSG00000086969	4930443O20Rik	-	RIKEN cDNA 4930443O20 gene	ncRNA	0.000000	0.462687	
mm_105070.1	chr11	100738083	100738283	-	1	NA	NA	NA	32	NM_024456	19345	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0.065000	0.636816	
mm_116632.1	chr13	48968115	48968315	-	1	NA	NA	NA	103	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.170000	0.840796	4(CCCCCTAAAGGG,-,0.00),6(CCCTAAAGGGCC,+,0.00)
mm_83607.1	chr9	48604993	48605193	-	1	NA	NA	NA	30	NM_001311062	18113	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0.010000	0.507463	
mm_97677.1	chr11	79973580	79973780	+	1	NA	NA	NA	-11293	NM_144826	216987	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.055000	0.557214	
mm_154344.1	chrM	5226	5426	+	1	NA	NA	NA	NA	NA									0.025000	0.383085	
mm_1002.1	chr1	58714551	58714751	+	1	NA	NA	NA	1365	NM_207653	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.000000	0.393035	
mm_11000.1	chr2	26445823	26446023	+	1	NA	NA	NA	-707	NM_153125	227648	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	0.100000	0.641791	
mm_48135.1	chr5	137150082	137150282	-	1	NA	NA	NA	-33975	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.517413	
mm_100856.1	chr11	5862198	5862398	-	1	NA	NA	NA	432	NM_001291857	11568	Mm.3317	NM_009636	ENSMUSG00000020473	Aebp1	ACLP	AE binding protein 1	protein-coding	0.085000	0.641791	
mm_67139.1	chr7	73105121	73105321	-	1	NA	NA	NA	-3153	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	0.000000	0.472637	
mm_15370.1	chr2	156421068	156421268	+	1	NA	NA	NA	259	NM_001291123	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.120000	0.696517	
mm_148218.1	chr18	80236730	80236930	-	1	NA	NA	NA	10272	NM_001136181	66255	Mm.272341	NM_001136181	ENSMUSG00000078963	Hsbp1l1	1810005K13Rik	heat shock factor binding protein 1-like 1	protein-coding	0.055000	0.626866	
mm_98530.1	chr11	94997812	94998012	+	1	NA	NA	NA	6700	NM_172261	217124	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.015000	0.552239	
mm_7707.1	chr1	130449122	130449322	-	1	NA	NA	NA	13522	NM_010016	13136	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0.005000	0.467662	
mm_114723.1	chr13	83715162	83715362	+	1	NA	NA	NA	-12844	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.045000	0.537313	43(GCTTATATAGAC,+,0.00)
mm_158063.1	chrX	101212730	101212930	-	1	NA	NA	NA	9733	NM_001110311	55988	Mm.206949	NM_018875	ENSMUSG00000046032	Snx12	2610001F05Rik|AW045757|SDP8	sorting nexin 12	protein-coding	0.030000	0.512438	
mm_53893.1	chr6	3377178	3377378	-	1	NA	NA	NA	22293	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.000000	0.288557	
mm_47144.1	chr5	120560262	120560462	-	1	NA	NA	NA	28251	NM_145853	252972	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.025000	0.582090	
mm_38856.1	chr4	149426136	149426336	-	1	NA	NA	NA	395	NM_022022	63958	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0.105000	0.721393	
mm_28933.1	chr3	98881955	98882155	-	1	NA	NA	NA	11175	NM_019545	56185	Mm.281874	NM_019545	ENSMUSG00000027870	Hao2	AI325478|Hao-2|Hao3|Haox3	hydroxyacid oxidase 2	protein-coding	0.000000	0.502488	
mm_45336.1	chr5	65697830	65698030	-	1	NA	NA	NA	-74	NM_001081321	71521	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0.175000	0.815920	
mm_147170.1	chr18	36726580	36726780	-	1	NA	NA	NA	135	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.025000	0.452736	
mm_31324.1	chr4	46389381	46389581	+	1	NA	NA	NA	-44	NM_001347095	74753	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0.140000	0.681592	
mm_157642.1	chrX	57281494	57281694	-	1	NA	NA	NA	57135	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	0.005000	0.512438	
mm_14079.1	chr2	124610329	124610529	+	1	NA	NA	NA	133	NM_172537	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.105000	0.736318	
mm_89761.1	chr10	100026969	100027169	+	1	NA	NA	NA	11248	NM_013598	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.000000	0.402985	
mm_82486.1	chr9	18468098	18468298	-	1	NA	NA	NA	5361	NM_028935	72230	Mm.289689	NM_028935	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	0.005000	0.482587	
mm_154069.1	chr19	55910531	55910731	-	1	NA	NA	NA	15310	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.035000	0.497512	
mm_50478.1	chr6	48988019	48988219	+	1	NA	NA	NA	1258	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.015000	0.562189	
mm_163749.1	chr13	119755902	119756102	-	1	NA	NA	NA	-120	NM_175538	245269	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0.030000	0.631841	
mm_36783.1	chr4	103011864	103012064	-	1	NA	NA	NA	1	NR_028391	100473	Mm.393171	NR_028391	ENSMUSG00000085041	BB031773	-	expressed sequence BB031773	ncRNA	0.015000	0.507463	-76(GAACTTATAAGG,-,0.00)
mm_84697.1	chr9	72409697	72409897	-	1	NA	NA	NA	-28732	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.010000	0.467662	
mm_31911.1	chr4	85205026	85205226	+	1	NA	NA	NA	-330	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.030000	0.532338	
mm_75011.1	chr8	27413842	27414042	-	1	NA	NA	NA	2	NM_021369	11440	Mm.283137	NM_021369	ENSMUSG00000031491	Chrna6	Acra6|Nica6	cholinergic receptor, nicotinic, alpha polypeptide 6	protein-coding	0.005000	0.562189	
mm_33006.1	chr4	120666471	120666671	+	1	NA	NA	NA	8	NM_019563	56222	Mm.272646	NM_019563	ENSMUSG00000070803	Cited4	MRG-2|Mrg2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding	0.060000	0.582090	
mm_5962.1	chr1	56972143	56972343	-	1	NA	NA	NA	774	NR_024325	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0.100000	0.691542	
mm_106476.1	chr11	120139350	120139550	-	1	NA	NA	NA	11901	NM_001164799	72055	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0.030000	0.532338	
mm_111279.1	chr12	85350454	85350654	-	1	NA	NA	NA	-11192	NM_145138	217718	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.005000	0.363184	
mm_18073.1	chr2	42652885	42653085	-	1	NA	NA	NA	613	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding	0.075000	0.597015	
mm_123680.1	chr14	69503220	69503420	-	1	NA	NA	NA	9229	NM_173420	239167	Mm.259889	NM_173420	ENSMUSG00000047977	Synb	D930020E02Rik|syncytin-B	syncytin b	protein-coding	0.065000	0.666667	
mm_126056.1	chr15	76949479	76949679	+	1	NA	NA	NA	1035	NM_054099	117171	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0.035000	0.527363	
mm_84397.1	chr9	65552009	65552209	-	1	NA	NA	NA	27978	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.020000	0.512438	
mm_41757.1	chr5	102845925	102846125	+	1	NA	NA	NA	1018	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.030000	0.542289	
mm_53481.1	chr6	134981837	134982037	+	1	NA	NA	NA	-64	NM_001109914	381823	Mm.296104	NM_001109914	ENSMUSG00000090698	Apold1	Gm1075	apolipoprotein L domain containing 1	protein-coding	0.025000	0.532338	
mm_136807.1	chr17	12382735	12382935	+	1	NA	NA	NA	4226	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.005000	0.512438	
mm_78050.1	chr9	14704438	14704638	+	1	NA	NA	NA	36195	NM_177905	330890	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	0.015000	0.512438	
mm_68271.1	chr7	105595577	105595777	-	1	NA	NA	NA	4439	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.020000	0.512438	
mm_93132.1	chr10	92116401	92116601	-	1	NA	NA	NA	20722	NR_037219	100526517		NR_037219	ENSMUSG00000093227	Mir1251	mir-1251|mmu-mir-1251	microRNA 1251	ncRNA	0.015000	0.323383	
mm_102746.1	chr11	67254734	67254934	-	1	NA	NA	NA	17022	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.025000	0.512438	
mm_145945.1	chr18	67390579	67390779	+	1	NA	NA	NA	-52	NM_026473	67951	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	0.110000	0.716418	
mm_11263.1	chr2	29966277	29966477	+	1	NA	NA	NA	817	NM_001309460	20740	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	0.005000	0.363184	-52(TTCTATATAAGA,-,0.00)
mm_2717.1	chr1	128151156	128151356	+	1	NA	NA	NA	47950	NM_181750	226412	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	0.005000	0.507463	
mm_156518.1	chrX	150589793	150589993	+	1	NA	NA	NA	-28	NM_008824	18639	Mm.249131	NM_008824	ENSMUSG00000025271	Pfkfb1	PFK/FBPase 1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	protein-coding	0.015000	0.482587	
mm_101407.1	chr11	27507026	27507226	-	1	NA	NA	NA	722018	NR_002890	654472	Mm.347777	NR_002890		Gm12070	OTTMUSG00000005300	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.005000	0.462687	
mm_102757.1	chr11	67379680	67379880	-	1	NA	NA	NA	52677	NM_001081250	544791	Mm.461064	NM_001081250	ENSMUSG00000060180	Myh13	MyHC-eo	myosin, heavy polypeptide 13, skeletal muscle	protein-coding	0.010000	0.552239	
mm_60966.1	chr7	47772586	47772786	+	1	NA	NA	NA	-171314	NM_153067	233222	Mm.240142	NM_153067	ENSMUSG00000078698	Mrgpra3	Mrga3	MAS-related GPR, member A3	protein-coding	0.000000	0.373134	
mm_44307.1	chr5	8997050	8997250	-	1	NA	NA	NA	-4	NM_023733	74114	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.105000	0.716418	
mm_34077.1	chr4	138457893	138458093	+	1	NA	NA	NA	2845	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.010000	0.398010	
mm_54460.1	chr6	34875518	34875718	-	1	NA	NA	NA	2447	NM_199145	78412	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.025000	0.572139	
mm_172064.1	chr6	135362862	135363062	+	1	NA	NA	NA	31	NM_001288628	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.020000	0.492537	-43(CTCCTTTAAAAC,-,0.00),-41(CCTTTAAAACAC,+,0.00)
mm_29834.1	chr3	129803993	129804193	-	1	NA	NA	NA	-63	NM_001287224	242235	Mm.302549	NM_001205102	ENSMUSG00000093865	Lrit3	Gm421	leucine-rich repeat, immunoglobulin-like and transmembrane domains 3	protein-coding	0.025000	0.542289	
mm_163215.1	chr11	100938658	100938858	+	1	NA	NA	NA	782	NM_213660	20848	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.015000	0.616915	
mm_93369.1	chr10	105313945	105314145	-	1	NA	NA	NA	260434	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.005000	0.238806	
mm_13072.1	chr2	91119761	91119961	+	1	NA	NA	NA	1717	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.015000	0.497512	
mm_1897.1	chr1	85709326	85709526	+	1	NA	NA	NA	27180	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.005000	0.512438	
mm_144299.1	chr18	12333837	12334037	+	1	NA	NA	NA	-87	NM_010680	16774	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0.095000	0.736318	
mm_151557.1	chr19	59459478	59459678	+	1	NA	NA	NA	888	NM_010132	13797	Mm.245394	NM_010132	ENSMUSG00000043969	Emx2	Pdo	empty spiracles homeobox 2	protein-coding	0.115000	0.686567	
mm_168347.1	chr11	12241637	12241837	+	1	NA	NA	NA	170403	NM_001282994	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.000000	0.477612	
mm_154817.1	chrX	14714630	14714830	+	1	NA	NA	NA	396759	NR_033171	67395	Mm.50369	NM_026128	ENSMUSG00000045217	Ppp1r2-ps9	4930403L05Rik	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 9	pseudo	0.020000	0.388060	
mm_37217.1	chr4	117914849	117915049	-	1	NA	NA	NA	50	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	0.095000	0.681592	
mm_48256.1	chr5	137831142	137831342	-	1	NA	NA	NA	5036	NM_153510	231805	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.005000	0.517413	
mm_110920.1	chr12	76274130	76274330	-	1	NA	NA	NA	18998	NM_138745	108156	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0.005000	0.457711	58(GGCTATATAGGG,-,0.00)
mm_131965.1	chr16	24670433	24670633	+	1	NA	NA	NA	-51322	NM_001145954	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.000000	0.467662	
mm_52280.1	chr6	108660427	108660627	+	1	NA	NA	NA	-102	NM_011498	20893	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0.075000	0.696517	
mm_10800.1	chr2	24349544	24349744	+	1	NA	NA	NA	4273	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.020000	0.507463	-55(CCCCTTATAGTC,+,0.00)
mm_24089.1	chr3	87975934	87976134	+	1	NA	NA	NA	4941	NM_016701	18008	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46	nestin	protein-coding	0.000000	0.462687	
mm_156230.1	chrX	135838983	135839183	+	1	NA	NA	NA	49	NM_001163017	245607	Mm.489763	NM_001163015	ENSMUSG00000072966	Gprasp2	5330440H13Rik|GASP-2|GASP2|Prpl5	G protein-coupled receptor associated sorting protein 2	protein-coding	0.080000	0.646766	
mm_128550.1	chr15	55636706	55636906	-	1	NA	NA	NA	79398	NM_001168250	105837	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0.005000	0.358209	
mm_18412.1	chr2	60599811	60600011	-	1	NA	NA	NA	-46603	NM_008867	18779	Mm.5092	NM_008867	ENSMUSG00000054580	Pla2r1	Pla2-r|Pla2g1br|Pla2r	phospholipase A2 receptor 1	protein-coding	0.000000	0.363184	
mm_17882.1	chr2	34961710	34961910	-	1	NA	NA	NA	-38	NM_001326601	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.010000	0.507463	
mm_126982.1	chr15	93473385	93473585	+	1	NA	NA	NA	75021	NM_001285863	223828	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.000000	0.268657	
mm_131600.1	chr16	19051251	19051451	+	1	NA	NA	NA	174601	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.015000	0.383085	
mm_18480.1	chr2	62573716	62573916	-	1	NA	NA	NA	205	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.040000	0.497512	
mm_140457.1	chr17	89717998	89718198	+	1	NA	NA	NA	338857	NR_045952	100043904	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA	0.005000	0.417910	
mm_97610.1	chr11	78951059	78951259	+	1	NA	NA	NA	25868	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.025000	0.582090	
mm_37061.1	chr4	116053699	116053899	-	1	NA	NA	NA	77	NM_028142	72181	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	0.095000	0.592040	
mm_78554.1	chr9	35424830	35425030	+	1	NA	NA	NA	-27146	NM_021339	57810	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	0.010000	0.487562	
mm_24516.1	chr3	92689288	92689488	+	1	NA	NA	NA	-2178	NM_027137	69611	Mm.176243	NM_027137	ENSMUSG00000103243	Lce1d	2310037L11Rik|AI415320|Sprrl7	late cornified envelope 1D	protein-coding	0.070000	0.616915	
mm_148127.1	chr18	75666047	75666247	-	1	NA	NA	NA	31549	NM_201354	269037	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0.020000	0.532338	
mm_108423.1	chr12	82170176	82170376	+	1	NA	NA	NA	260	NM_001167983	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.120000	0.686567	
mm_48280.1	chr5	138170913	138171113	-	1	NA	NA	NA	849	NM_008568	17220	Mm.378965	NM_008568	ENSMUSG00000029730	Mcm7	AI747533|Mcmd7|mCDC47	minichromosome maintenance complex component 7	protein-coding	0.065000	0.611940	
mm_26292.1	chr3	142506783	142506983	+	1	NA	NA	NA	9949	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.010000	0.492537	
mm_29114.1	chr3	104916095	104916295	-	1	NA	NA	NA	45514	NM_009520	22414	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.040000	0.432836	
mm_26081.1	chr3	136670720	136670920	+	1	NA	NA	NA	754	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.140000	0.706468	
mm_82292.1	chr9	7764672	7764872	-	1	NA	NA	NA	695	NM_133739	71929	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0.040000	0.542289	
mm_27725.1	chr3	69004424	69004624	-	1	NA	NA	NA	46	NM_026641	68259	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	0.075000	0.577114	
mm_40412.1	chr5	53063819	53064019	+	1	NA	NA	NA	14566	NM_011402	20531	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	0.005000	0.497512	
mm_52475.1	chr6	114302053	114302253	+	1	NA	NA	NA	19518	NM_178703	232333	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.040000	0.587065	
mm_163937.1	chr14	50943160	50943360	+	1	NA	NA	NA	-1043	NM_013632	18950	Mm.17932	NM_013632	ENSMUSG00000021871	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	0.000000	0.457711	
mm_87598.1	chr10	57645774	57645974	+	1	NA	NA	NA	5	NM_001039053	18768	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.015000	0.532338	
mm_28013.1	chr3	83043700	83043900	-	1	NA	NA	NA	6063	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.035000	0.427861	
mm_82580.1	chr9	21149780	21149980	-	1	NA	NA	NA	26	NM_016742	12539	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0.100000	0.676617	
mm_65069.1	chr7	19001067	19001267	-	1	NA	NA	NA	-2898	NM_178757	272359	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0.040000	0.606965	
mm_155173.1	chrX	53607804	53608004	+	1	NA	NA	NA	-18	NM_028375	72865	Mm.158897	NM_028375	ENSMUSG00000051851	Cxx1c	2900027G03Rik|Mar8.1|Mart8a	CAAX box 1C	protein-coding	0.030000	0.601990	-89(GTTTTTAGACCC,+,0.00)
mm_19393.1	chr2	91526367	91526567	-	1	NA	NA	NA	-19855	NM_001165989	75786	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0.010000	0.398010	
mm_137262.1	chr17	24640674	24640874	+	1	NA	NA	NA	4183	NM_023449	65962	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0.050000	0.572139	
mm_109510.1	chr12	111453653	111453853	+	1	NA	NA	NA	11092	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.005000	0.492537	
mm_62425.1	chr7	101332758	101332958	+	1	NA	NA	NA	11539	NM_019990	56018	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	0.000000	0.338308	
mm_149277.1	chr19	10605590	10605790	+	1	NA	NA	NA	65	NM_015735	13194	Mm.289915	NM_015735	ENSMUSG00000024740	Ddb1	127kDa|AA408517|p127-Ddb1	damage specific DNA binding protein 1	protein-coding	0.100000	0.636816	
mm_122281.1	chr14	34502546	34502746	-	1	NA	NA	NA	-100	NM_009758	12166	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK3|AU045487|BMPR-IA|Bmpr	bone morphogenetic protein receptor, type 1A	protein-coding	0.130000	0.776119	
mm_46435.1	chr5	104859698	104859898	-	1	NA	NA	NA	270	NM_001039231	626391	Mm.385405	NM_001039231	ENSMUSG00000072774	Zfp951	C230055K05Rik	zinc finger protein 951	protein-coding	0.020000	0.477612	
mm_27378.1	chr3	50443444	50443644	-	1	NA	NA	NA	69	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.040000	0.567164	-73(GCTTAAATACGG,+,0.00)
mm_132515.1	chr16	37580044	37580244	+	1	NA	NA	NA	-9	NR_027778	15233	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	0.015000	0.422886	
mm_171002.1	chr2	78504902	78505102	+	1	NA	NA	NA	267455	NM_177843	329436	Mm.235448	NM_177843		Gm14461	A830093M07|OTTMUSG00000016703	predicted gene 14461	protein-coding	0.045000	0.636816	
mm_90277.1	chr10	122805451	122805651	+	1	NA	NA	NA	126236	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.010000	0.398010	
mm_152135.1	chr19	7032463	7032663	-	1	NA	NA	NA	7463	NM_016737	20867	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	0.005000	0.497512	
mm_88756.1	chr10	80329405	80329605	+	1	NA	NA	NA	-32	NM_008793	18551	Mm.299916	NM_008793	ENSMUSG00000020131	Pcsk4	AI647044|L21221|NEC 3|NEC3|PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding	0.040000	0.651741	
mm_27232.1	chr3	36461886	36462086	-	1	NA	NA	NA	13538	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.015000	0.447761	
mm_116261.1	chr13	34246537	34246737	-	1	NA	NA	NA	83673	NM_001110515	69666	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.000000	0.452736	
mm_88774.1	chr10	80356387	80356587	+	1	NA	NA	NA	28	NM_001347124	216166	Mm.17613	NM_183152	ENSMUSG00000035486	Plk5	6330514A18Rik	polo-like kinase 5	protein-coding	0.125000	0.766169	
mm_71579.1	chr8	54571350	54571550	+	1	NA	NA	NA	21119	NM_029569	76294	Mm.33171	NM_029569	ENSMUSG00000031519	Asb5	1110018D09Rik	ankyrin repeat and SOCs box-containing 5	protein-coding	0.000000	0.437811	
mm_161293.1	chr14	26460099	26460299	-	1	NA	NA	NA	74425	NM_032008	83997	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0.005000	0.402985	
mm_122824.1	chr14	54686050	54686250	-	1	NA	NA	NA	-21	NM_021437	58248	Mm.197509	NM_021437	ENSMUSG00000040822	1700123O20Rik	MNCb-2990	RIKEN cDNA 1700123O20 gene	protein-coding	0.050000	0.592040	32(GGCCTTAAGGGG,-,0.00)
mm_12015.1	chr2	57369212	57369412	+	1	NA	NA	NA	130930	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.010000	0.323383	63(CCTTTAAGACAT,+,0.00)
mm_70638.1	chr8	13907641	13907841	+	1	NA	NA	NA	2	NM_001347316	66822	Mm.37950	NM_025785	ENSMUSG00000038365	Fbxo25	9130015I06Rik|AI649137|Fbx25	F-box protein 25	protein-coding	0.110000	0.681592	
mm_59961.1	chr7	30427524	30427724	+	1	NA	NA	NA	4320	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.030000	0.542289	
mm_131742.1	chr16	22058912	22059112	+	1	NA	NA	NA	49528	NR_027488	75826	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.010000	0.383085	
mm_19938.1	chr2	116065855	116066055	-	1	NA	NA	NA	-897	NM_010825	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.040000	0.701493	
mm_18369.1	chr2	59882484	59882684	-	1	NA	NA	NA	22	NM_001159636	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.090000	0.726368	
mm_90554.1	chr10	128108881	128109081	+	1	NA	NA	NA	16198	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.020000	0.547264	
mm_29079.1	chr3	104089448	104089648	-	1	NA	NA	NA	-121232	NR_030676	100125931	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	0.010000	0.467662	
mm_6683.1	chr1	80631309	80631509	-	1	NA	NA	NA	33943	NM_001285927	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.000000	0.482587	
mm_59911.1	chr7	30414439	30414639	+	1	NA	NA	NA	751	NM_011662	22177	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0.020000	0.557214	
mm_47497.1	chr5	124032152	124032352	-	1	NA	NA	NA	8	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.170000	0.766169	
mm_23589.1	chr3	64039200	64039400	+	1	NA	NA	NA	-42342	NM_019918	56544	Mm.57069	NM_019918	ENSMUSG00000027824	Vmn2r1	Casrl1|EG56544|V2r83	vomeronasal 2, receptor 1	protein-coding	0.030000	0.452736	
mm_66486.1	chr7	45019220	45019420	-	1	NA	NA	NA	1313	NM_009101	20130	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.005000	0.572139	
mm_95582.1	chr11	52860325	52860525	+	1	NA	NA	NA	95719	NM_177059	320027	Mm.44518	NM_177059	ENSMUSG00000036264	Fstl4	B230374F23Rik|SPIG1|mKIAA1061	follistatin-like 4	protein-coding	0.005000	0.328358	-79(TCTTTTAGGGGG,+,0.00)
mm_35420.1	chr4	35130659	35130859	-	1	NA	NA	NA	-21296	NM_199157	387510	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.010000	0.338308	
mm_91591.1	chr10	40302096	40302296	-	1	NA	NA	NA	-8	NM_009665	11702	Mm.253533	NM_009665	ENSMUSG00000075232	Amd1	AdoMetDC|Amd-1|SAMDC|SAMDC 1|adoMetDC1	S-adenosylmethionine decarboxylase 1	protein-coding	0.075000	0.577114	-24(GCTTATATAAGG,+,0.00),-24(GCTTATATAAGG,-,0.00)
mm_55158.1	chr6	51592201	51592401	-	1	NA	NA	NA	47778	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.035000	0.527363	
mm_119096.1	chr14	30895339	30895539	+	1	NA	NA	NA	8963	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.030000	0.547264	
mm_24324.1	chr3	89436649	89436849	+	1	NA	NA	NA	45	NM_146131	229534	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	0.035000	0.567164	
mm_98846.1	chr11	97658891	97659091	+	1	NA	NA	NA	-4421	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.025000	0.502488	
mm_4174.1	chr1	171121605	171121805	+	1	NA	NA	NA	44	NM_001081275	75472	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.010000	0.497512	-77(CCTCTTATGCCC,+,0.00)
mm_8438.1	chr1	152766238	152766438	-	1	NA	NA	NA	-33	NM_001346117	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.110000	0.691542	
mm_168726.1	chr12	110695261	110695461	-	1	NA	NA	NA	1034	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.045000	0.467662	
mm_8229.1	chr1	138175197	138175397	-	1	NA	NA	NA	8	NM_011210	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.015000	0.388060	
mm_52192.1	chr6	99774846	99775046	+	1	NA	NA	NA	-48554	NM_001170419	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.035000	0.542289	
mm_139641.1	chr17	57377480	57377680	+	1	NA	NA	NA	18894	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.373134	
mm_4408.1	chr1	172481710	172481910	+	1	NA	NA	NA	-403	NM_001145800	93842	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	0.025000	0.567164	
mm_68828.1	chr7	126200232	126200432	-	1	NA	NA	NA	76	NM_028816	74204	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|mKIAA0370	exportin 6	protein-coding	0.120000	0.771144	
mm_61608.1	chr7	80030666	80030866	+	1	NA	NA	NA	4538	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.020000	0.512438	
mm_104540.1	chr11	96713277	96713477	-	1	NA	NA	NA	64178	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.035000	0.477612	
mm_107101.1	chr12	17728160	17728360	+	1	NA	NA	NA	37446	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.025000	0.557214	
mm_70914.1	chr8	25720042	25720242	+	1	NA	NA	NA	94	NR_121643	71910	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	0.115000	0.691542	
mm_90500.1	chr10	128035491	128035691	+	1	NA	NA	NA	245	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.110000	0.661692	
mm_112468.1	chr13	5868288	5868488	+	1	NA	NA	NA	6899	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.030000	0.368159	
mm_119991.1	chr14	55591068	55591268	+	1	NA	NA	NA	-67	NM_001029855	19188	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	0.045000	0.587065	
mm_32500.1	chr4	108459688	108459888	+	1	NA	NA	NA	362	NM_175472	230594	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.065000	0.686567	
mm_86309.1	chr9	122805367	122805567	-	1	NA	NA	NA	-80	NM_001013405	382117	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding	0.055000	0.621891	
mm_156627.1	chrX	155262371	155262571	+	1	NA	NA	NA	28	NM_019736	56360	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	0.065000	0.651741	
mm_56927.1	chr6	119467117	119467317	-	1	NA	NA	NA	-6	NM_001271758	22419	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0.000000	0.507463	
mm_28570.1	chr3	93444970	93445170	-	1	NA	NA	NA	2740	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.035000	0.572139	
mm_18679.1	chr2	71338362	71338562	-	1	NA	NA	NA	29092	NM_172436	78830	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.025000	0.507463	
mm_100312.1	chr11	117978039	117978239	+	1	NA	NA	NA	-8718	NM_133757	74451	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.005000	0.577114	
mm_127263.1	chr15	99712579	99712779	+	1	NA	NA	NA	-4914	NM_010271	14555	Mm.252391	NM_010271	ENSMUSG00000023019	Gpd1	AI747587|Gdc-1|Gdc1|mKIAA4010	glycerol-3-phosphate dehydrogenase 1 (soluble)	protein-coding	0.030000	0.611940	
mm_8773.1	chr1	161038434	161038634	-	1	NA	NA	NA	442	NR_028543	100217446		NR_028543	ENSMUSG00000064968	Snord47	MBII-96	small nucleolar RNA, C/D box 47	snoRNA	0.000000	0.378109	
mm_66958.1	chr7	62423214	62423414	-	1	NA	NA	NA	-3175	NM_011746	22652	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	0.005000	0.497512	
mm_39360.1	chr5	9113154	9113354	+	1	NA	NA	NA	12517	NM_001081029	652925	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.000000	0.412935	
mm_7351.1	chr1	106594346	106594546	-	1	NA	NA	NA	-47815	NR_106164	102466254		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.005000	0.333333	
mm_142537.1	chr17	46552750	46552950	-	1	NA	NA	NA	1039	NR_105942	102466778		NR_105942	ENSMUSG00000106514	Mir6976	mmu-mir-6976	microRNA 6976	ncRNA	0.015000	0.502488	76(CTCCTTAAAAAC,-,0.00)
mm_72274.1	chr8	75099981	75100181	+	1	NA	NA	NA	6463	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.000000	0.517413	
mm_63527.1	chr7	127912913	127913113	+	1	NA	NA	NA	496	NM_026370	67773	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|Myst1	K(lysine) acetyltransferase 8	protein-coding	0.015000	0.417910	
mm_93691.1	chr10	117820448	117820648	-	1	NA	NA	NA	25426	NM_024457	215449	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.030000	0.452736	
mm_62269.1	chr7	99535452	99535652	+	1	NA	NA	NA	66	NM_177231	109689	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	0.160000	0.781095	
mm_80595.1	chr9	85845403	85845603	+	1	NA	NA	NA	2651	NM_001164792	21983	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	0.025000	0.393035	
mm_138448.1	chr17	35135455	35135655	+	1	NA	NA	NA	-159	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.100000	0.646766	
mm_84749.1	chr9	75409895	75410095	-	1	NA	NA	NA	21	NM_015806	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.125000	0.741294	
mm_68898.1	chr7	126450064	126450264	-	1	NA	NA	NA	12909	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.050000	0.587065	
mm_94322.1	chr11	4238012	4238212	+	1	NA	NA	NA	1327	NM_001013365	18413	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.005000	0.487562	35(TCTTATAGAGGA,+,0.00)
mm_92889.1	chr10	82771030	82771230	-	1	NA	NA	NA	-6989	NM_010914	18045	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	0.035000	0.502488	
mm_32938.1	chr4	119262165	119262365	+	1	NA	NA	NA	6796	NM_001038590	242653	Mm.130701	NM_153105	ENSMUSG00000066058	Cldn19	-	claudin 19	protein-coding	0.020000	0.368159	
mm_154424.1	chrM	287	487	-	1	NA	NA	NA	NA	NA									0.045000	0.338308	
mm_134400.1	chr16	17554710	17554910	-	1	NA	NA	NA	6437	NM_029053	74685	Mm.38634	NM_029053	ENSMUSG00000022759	Lrrc74b	4930451C15Rik|mCG12354|mCP17390	leucine rich repeat containing 74B	protein-coding	0.010000	0.482587	-36(CACTATAAGAGG,-,0.00)
mm_143995.1	chr17	88002433	88002633	-	1	NA	NA	NA	27483	NM_010830	17688	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.005000	0.417910	
mm_81428.1	chr9	109057202	109057402	+	1	NA	NA	NA	1949	NM_001012236	22040	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	0.010000	0.512438	
mm_161413.1	chr15	18820385	18820585	+	1	NA	NA	NA	156	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0.010000	0.427861	
mm_89284.1	chr10	87871843	87872043	+	1	NA	NA	NA	10832	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.005000	0.467662	
mm_90436.1	chr10	127642905	127643105	+	1	NA	NA	NA	19	NM_009284	20852	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.070000	0.621891	
mm_36001.1	chr4	56741310	56741510	-	1	NA	NA	NA	15	NM_025271	11471	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Tact1	actin-like 7b	protein-coding	0.005000	0.562189	
mm_126961.1	chr15	92340242	92340442	+	1	NA	NA	NA	-56468	NM_001164593	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding	0.015000	0.348259	
mm_14324.1	chr2	129365904	129366104	+	1	NA	NA	NA	-3898	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.015000	0.502488	
mm_168065.1	chr10	103214054	103214254	-	1	NA	NA	NA	22168	NM_001163559	74978	Mm.483817	NM_029134	ENSMUSG00000019892	Lrriq1	4930503E15Rik|Gm1557	leucine-rich repeats and IQ motif containing 1	protein-coding	0.020000	0.497512	
mm_92204.1	chr10	68136681	68136881	-	1	NA	NA	NA	141945	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.020000	0.606965	
mm_77048.1	chr8	109576652	109576852	-	1	NA	NA	NA	2420	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.025000	0.492537	
mm_89699.1	chr10	97607215	97607415	+	1	NA	NA	NA	110	NM_008438	16545	Mm.6228	NM_008438	ENSMUSG00000019932	Kera	CNA2|SLRR2B	keratocan	protein-coding	0.005000	0.348259	
mm_1873.1	chr1	85600774	85600974	+	1	NA	NA	NA	171	NM_001013817	434484	Mm.445821	NM_001013817	ENSMUSG00000070031	Sp140	-	Sp140 nuclear body protein	protein-coding	0.015000	0.557214	
mm_166369.1	chr5	125304141	125304341	+	1	NA	NA	NA	36853	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.040000	0.597015	
mm_100306.1	chr11	117976123	117976323	+	1	NA	NA	NA	-6857	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.025000	0.626866	
mm_150429.1	chr19	37465157	37465357	+	1	NA	NA	NA	3	NR_131009	78640	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	0.025000	0.487562	
mm_144680.1	chr18	34759006	34759206	+	1	NA	NA	NA	200	NM_175104	66306	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	0.040000	0.577114	
mm_51083.1	chr6	67017546	67017746	+	1	NA	NA	NA	-18953	NR_040278	320172	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0.020000	0.457711	
mm_113054.1	chr13	23692005	23692205	+	1	NA	NA	NA	-3706	NM_010377	107970	Mm.8048	NM_010377	ENSMUSG00000036211	Hist1h1t	H1.6|H1ft|H1t	histone cluster 1, H1t	protein-coding	0.015000	0.442786	-75(GTATTTATAGGC,+,0.00)
mm_126194.1	chr15	78772560	78772760	+	1	NA	NA	NA	785	NM_008595	17305	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.010000	0.592040	
mm_82212.1	chr9	124143856	124144056	+	1	NA	NA	NA	22413	NM_009917	12774	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0.005000	0.363184	-26(GGCTTTATAAAT,-,0.00)
mm_79117.1	chr9	46282911	46283111	+	1	NA	NA	NA	-1	NM_146000	215051	Mm.32648	NM_146000	ENSMUSG00000032077	Bud13	AV305342|D030060M11Rik	BUD13 homolog	protein-coding	0.065000	0.582090	
mm_28890.1	chr3	97869591	97869791	-	1	NA	NA	NA	19016	NM_001289702	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.030000	0.472637	
mm_129100.1	chr15	76013078	76013278	-	1	NA	NA	NA	1158	NM_134087	105732	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	0.020000	0.676617	
mm_56193.1	chr6	88825746	88825946	-	1	NA	NA	NA	16089	NM_030251	80283	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.000000	0.487562	
mm_42919.1	chr5	122719831	122720031	+	1	NA	NA	NA	12387	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.015000	0.437811	
mm_80277.1	chr9	73010261	73010461	+	1	NA	NA	NA	24857	NM_028181	72278	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	0.015000	0.393035	
mm_132082.1	chr16	30198026	30198226	+	1	NA	NA	NA	69406	NM_027904	71756	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.000000	0.477612	
mm_36782.1	chr4	102989549	102989749	-	1	NA	NA	NA	106	NR_040444	100504717	Mm.394445	NR_040444	ENSMUSG00000085181	Gm12709	OTTMUSG00000008056	predicted gene 12709	ncRNA	0.015000	0.442786	-76(AGCCCTAAATGG,-,0.00)
mm_46575.1	chr5	107289441	107289641	-	1	NA	NA	NA	54	NM_011578	21814	Mm.200775	NM_011578	ENSMUSG00000029287	Tgfbr3	1110036H20Rik|AU015626|AW215636|TBRIII	transforming growth factor, beta receptor III	protein-coding	0.095000	0.696517	
mm_35820.1	chr4	46991940	46992140	-	1	NA	NA	NA	-326	NM_001081141	242425	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	0.140000	0.761194	
mm_141399.1	chr17	29263810	29264010	-	1	NA	NA	NA	61	NM_026845	68816	Mm.328928	NM_026845	ENSMUSG00000024007	Ppil1	1110060O10Rik|AI327391|Cypl1	peptidylprolyl isomerase (cyclophilin)-like 1	protein-coding	0.080000	0.661692	
mm_63187.1	chr7	125552218	125552418	+	1	NA	NA	NA	36	NM_001008700	16190	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0.100000	0.681592	
mm_43773.1	chr5	141241499	141241699	+	1	NA	NA	NA	65	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	0.165000	0.786070	
mm_140833.1	chr17	23669830	23670030	-	1	NA	NA	NA	-3678	NM_181821	353502	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	0.035000	0.616915	
mm_89993.1	chr10	112083238	112083438	+	1	NA	NA	NA	-16	NM_001347157	67537	Mm.292351	NM_026223	ENSMUSG00000020214	Glipr1l2	4921508O11Rik	GLI pathogenesis-related 1 like 2	protein-coding	0.055000	0.532338	
mm_128520.1	chr15	54278204	54278404	-	1	NA	NA	NA	180	NM_008764	18383	Mm.15383	NM_008764	ENSMUSG00000063727	Tnfrsf11b	OCIF|Opg|TR1	tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	protein-coding	0.035000	0.537313	-33(CCTTATATAAAA,+,0.00)
mm_65831.1	chr7	29179322	29179522	-	1	NA	NA	NA	1251	NM_026545	57296	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	0.020000	0.472637	
mm_12699.1	chr2	76499018	76499218	+	1	NA	NA	NA	112	NM_001290735	99031	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding	0.035000	0.552239	
mm_154157.1	chr19	58455515	58455715	-	1	NA	NA	NA	-217	NM_010279	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.060000	0.572139	
mm_32856.1	chr4	118359907	118360107	+	1	NA	NA	NA	8	NR_003946	68180	Mm.193212	NM_026601	ENSMUSG00000006395	Hyi	2700033B16Rik|6430559E15Rik|HT036	hydroxypyruvate isomerase (putative)	protein-coding	0.090000	0.686567	
mm_53862.1	chr6	149310232	149310432	+	1	NA	NA	NA	918	NM_001289662	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.005000	0.338308	55(CCTTTTATAAAG,+,0.00),57(TTTTATAAAGCC,+,0.00)
mm_1362.1	chr1	66364573	66364773	+	1	NA	NA	NA	42949	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.010000	0.467662	-76(ACCTCTTTAAGC,-,0.00),-74(CTCTTTAAGCCC,+,0.00)
mm_119389.1	chr14	41137297	41137497	+	1	NA	NA	NA	5609	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.000000	0.457711	
mm_64670.1	chr7	4445550	4445750	-	1	NA	NA	NA	7	NM_175372	108841	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	0.085000	0.611940	
mm_160904.1	chr11	77188798	77188998	-	1	NA	NA	NA	70	NM_176965	319634	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	0.015000	0.452736	
mm_130155.1	chr15	91191348	91191548	-	1	NA	NA	NA	359	NM_011994	26874	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.030000	0.497512	
mm_121707.1	chr14	15438861	15439061	-	1	NA	NA	NA	26	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding	0.070000	0.636816	
mm_61737.1	chr7	82174740	82174940	+	1	NA	NA	NA	-85068	NM_001277955	20408	Mm.736	NM_017400	ENSMUSG00000030638	Sh3gl3	EEN-B2|SH3P13|Sh3d2c|Sh3d2c2	SH3-domain GRB2-like 3	protein-coding	0.135000	0.726368	
mm_41210.1	chr5	88564894	88565094	+	1	NA	NA	NA	-46	NM_001289774	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.185000	0.855721	
mm_86703.1	chr10	18532606	18532806	+	1	NA	NA	NA	13370	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	0.005000	0.422886	
mm_5523.1	chr1	37864978	37865178	-	1	NA	NA	NA	4	NM_207228	211484	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	0.160000	0.711443	
mm_88368.1	chr10	75948244	75948444	+	1	NA	NA	NA	32	NM_009514	22364	Mm.333851	NM_009514	ENSMUSG00000000903	Vpreb3	8HS-20|AI528709|Vpreb-3	pre-B lymphocyte gene 3	protein-coding	0.020000	0.567164	
mm_25220.1	chr3	103851216	103851416	+	1	NA	NA	NA	-8479	NR_104070	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.015000	0.427861	
mm_7584.1	chr1	125421893	125422093	-	1	NA	NA	NA	13734	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.010000	0.278607	
mm_63912.1	chr7	139220497	139220697	+	1	NA	NA	NA	-7290	NM_001162540	57740	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	0.005000	0.537313	
mm_34511.1	chr4	148889254	148889454	+	1	NA	NA	NA	84962	NM_027195	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.005000	0.502488	
mm_141584.1	chr17	32403390	32403590	-	1	NA	NA	NA	91	NM_178785	320484	Mm.122284	NM_178785	ENSMUSG00000052142	Rasal3	A430107D22Rik	RAS protein activator like 3	protein-coding	0.020000	0.532338	
mm_81513.1	chr9	110035135	110035335	+	1	NA	NA	NA	-16786	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.010000	0.482587	
mm_164810.1	chr18	32147650	32147850	+	1	NA	NA	NA	-8180	NM_001042767	19123	Mm.2786	NM_008934	ENSMUSG00000024386	Proc	PC	protein C	protein-coding	0.055000	0.597015	
mm_103770.1	chr11	82006734	82006934	-	1	NA	NA	NA	-28743	NM_011333	20296	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.010000	0.492537	
mm_85801.1	chr9	110117359	110117559	-	1	NA	NA	NA	157	NM_001252682	72831	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	0.110000	0.686567	
mm_65158.1	chr7	19664917	19665117	-	1	NA	NA	NA	13	NM_019649	56457	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0.145000	0.751244	
mm_6723.1	chr1	82586670	82586870	-	1	NA	NA	NA	79	NM_007735	12829	Mm.40253	NM_007735	ENSMUSG00000067158	Col4a4	E130010M05Rik|[a]4(IV)	collagen, type IV, alpha 4	protein-coding	0.065000	0.651741	
mm_52594.1	chr6	116857862	116858062	+	1	NA	NA	NA	-141204	NM_178768	319776	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.020000	0.402985	
mm_138451.1	chr17	35135738	35135938	+	1	NA	NA	NA	124	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.070000	0.597015	
mm_161804.1	chr17	56393601	56393801	+	1	NA	NA	NA	25208	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0.030000	0.562189	
mm_48997.1	chr6	4756583	4756783	+	1	NA	NA	NA	9377	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.020000	0.452736	
mm_45506.1	chr5	72503312	72503512	-	1	NA	NA	NA	796	NM_016869	53419	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.055000	0.606965	
mm_55048.1	chr6	49042730	49042930	-	1	NA	NA	NA	6312	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.025000	0.487562	
mm_115149.1	chr13	105291524	105291724	+	1	NA	NA	NA	1390	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.015000	0.437811	
mm_100438.1	chr11	119486164	119486364	+	1	NA	NA	NA	-5083	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.000000	0.482587	
mm_128451.1	chr15	50772513	50772713	-	1	NA	NA	NA	116436	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.005000	0.343284	
mm_10959.1	chr2	25682662	25682862	+	1	NA	NA	NA	36	NM_178036	332578	Mm.246797	NM_178036	ENSMUSG00000047356	Lcn10	9230112J07Rik	lipocalin 10	protein-coding	0.015000	0.552239	
mm_98813.1	chr11	97279649	97279849	+	1	NA	NA	NA	827	NM_008942	19155	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0.050000	0.641791	
mm_126117.1	chr15	78261384	78261584	+	1	NA	NA	NA	16673	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.005000	0.363184	
mm_104016.1	chr11	85352533	85352733	-	1	NA	NA	NA	-531	NM_001166642	192197	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.045000	0.562189	
mm_63648.1	chr7	128688792	128688992	+	1	NA	NA	NA	22	NM_001346517	101490	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0.010000	0.437811	28(TTTTTTAAAAGG,-,0.00),29(TTTTTAAAAGGG,+,0.00)
mm_10292.1	chr2	10371512	10371712	+	1	NA	NA	NA	-824	NM_001198809	353282	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0.055000	0.572139	
mm_144930.1	chr18	37714621	37714821	+	1	NA	NA	NA	-113	NM_033590	93715	Mm.247203	NM_033590	ENSMUSG00000103472	Pcdhga7	-	protocadherin gamma subfamily A, 7	protein-coding	0.025000	0.437811	
mm_50383.1	chr6	48687587	48687787	+	1	NA	NA	NA	3109	NM_174990	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.005000	0.467662	
mm_42788.1	chr5	121483690	121483890	+	1	NA	NA	NA	19190	NM_172125	280667	Mm.444773	NM_172125	ENSMUSG00000062438	Adam1b	Adam1|Ftna	a disintegrin and metallopeptidase domain 1b	protein-coding	0.000000	0.288557	
mm_129003.1	chr15	74856142	74856342	-	1	NA	NA	NA	76	NM_009991	13072	Mm.377079	NM_009991	ENSMUSG00000022589	Cyp11b2	Cpn2|Cyp11b|Cyp11b-2	cytochrome P450, family 11, subfamily b, polypeptide 2	protein-coding	0.015000	0.532338	
mm_67704.1	chr7	89903506	89903706	-	1	NA	NA	NA	23	NM_001162979	70884	Mm.252823	NM_001162979	ENSMUSG00000039391	Ccdc81	4921513D09Rik	coiled-coil domain containing 81	protein-coding	0.045000	0.577114	
mm_79909.1	chr9	65460855	65461055	+	1	NA	NA	NA	18	NM_138584	27965	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	spastic paraplegia 21 homolog (human)	protein-coding	0.110000	0.746269	
mm_166172.1	chr5	27537764	27537964	+	1	NA	NA	NA	-36472	NM_028561	73526	Mm.389608	NM_028561	ENSMUSG00000048703	Speer4b	1700081O22Rik|SPEER-4B	spermatogenesis associated glutamate (E)-rich protein 4B	protein-coding	0.020000	0.462687	
mm_126987.1	chr15	94543574	94543774	+	1	NA	NA	NA	14	NM_029926	266632	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	0.065000	0.666667	
mm_149887.1	chr19	25383511	25383711	+	1	NA	NA	NA	-122095	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.030000	0.592040	
mm_130333.1	chr15	97721041	97721241	-	1	NA	NA	NA	9	NM_008902	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.005000	0.462687	-52(CTCTTAATAGGG,+,0.00)
mm_64923.1	chr7	16257777	16257977	-	1	NA	NA	NA	1461	NM_001173550	12273	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	0.025000	0.452736	
mm_5664.1	chr1	42693053	42693253	-	1	NA	NA	NA	1672	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.015000	0.393035	
mm_97909.1	chr11	83473001	83473201	+	1	NA	NA	NA	-7	NM_027427	70439	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	0.140000	0.716418	
mm_104434.1	chr11	94951522	94951722	-	1	NA	NA	NA	15398	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.025000	0.552239	
mm_148657.1	chr19	5510815	5511015	+	1	NA	NA	NA	-426	NM_001024560	225861	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0.065000	0.597015	
mm_100327.1	chr11	118209835	118210035	+	1	NA	NA	NA	2807	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.010000	0.482587	
mm_95277.1	chr11	45852736	45852936	+	1	NA	NA	NA	872	NM_001045520	216705	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.005000	0.358209	-35(TACTCTAAAGGG,-,0.00)
mm_114773.1	chr13	88821573	88821773	+	1	NA	NA	NA	201	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.110000	0.716418	
mm_169852.1	chr16	32332120	32332320	+	1	NA	NA	NA	-32	NM_177633	224111	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	0.145000	0.726368	
mm_54749.1	chr6	41033015	41033215	-	1	NA	NA	NA	2394	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.025000	0.472637	
mm_162308.1	chr1	37089559	37089759	+	1	NA	NA	NA	-128619	NM_001282010	12790	Mm.214224	NM_009918	ENSMUSG00000026114	Cnga3	CNG3	cyclic nucleotide gated channel alpha 3	protein-coding	0.005000	0.437811	
mm_113916.1	chr13	49504851	49505051	+	1	NA	NA	NA	141	NM_001012324	407800	Mm.386931	NM_001012324	ENSMUSG00000043631	Ecm2	9030618O22Rik|BC065151|tenonectin	extracellular matrix protein 2, female organ and adipocyte specific	protein-coding	0.005000	0.328358	-31(GTTTTTAAAGAA,+,0.00)
mm_64532.1	chr7	144175164	144175364	+	1	NA	NA	NA	-256	NM_001113373	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.015000	0.512438	
mm_120158.1	chr14	60709339	60709539	+	1	NA	NA	NA	-23465	NM_001310594	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.035000	0.601990	
mm_1850.1	chr1	83159653	83159853	+	1	NA	NA	NA	-9	NR_027636	71227	Mm.256482	NM_027725	ENSMUSG00000053161	Daw1	4930563E19Rik|4933429D11Rik|Wdr69|b2b1116Clo|b2b1584Clo	dynein assembly factor with WDR repeat domains 1	protein-coding	0.050000	0.562189	
mm_156931.1	chrX	169685054	169685254	+	1	NA	NA	NA	-45	NM_010797	17318	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	0.015000	0.447761	-65(ACCTATATAAGG,-,0.00)
mm_67420.1	chr7	80324338	80324538	-	1	NA	NA	NA	16	NM_173445	269955	Mm.474502	NM_173445	ENSMUSG00000038930	Rccd1	5830436H09|E430018M08Rik	RCC1 domain containing 1	protein-coding	0.035000	0.547264	
mm_9518.1	chr1	173748783	173748983	-	1	NA	NA	NA	-7074	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.000000	0.333333	-52(CTCTAGTAAAGG,-,0.00)
mm_148806.1	chr19	6276070	6276270	+	1	NA	NA	NA	-726	NM_010119	13660	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.030000	0.502488	
mm_71144.1	chr8	39130643	39130843	+	1	NA	NA	NA	124876	NM_030254	80286	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	0.015000	0.417910	
mm_26259.1	chr3	142500502	142500702	+	1	NA	NA	NA	3668	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.010000	0.502488	
mm_148934.1	chr19	7018691	7018891	+	1	NA	NA	NA	678	NM_153795	108101	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.040000	0.587065	
mm_90704.1	chr10	130367976	130368176	+	1	NA	NA	NA	26165	NM_001081448	625068	Mm.359168	NM_001081448	ENSMUSG00000070601	Vmn2r84	EG625068	vomeronasal 2, receptor 84	protein-coding	0.000000	0.313433	
mm_67455.1	chr7	80402146	80402346	-	1	NA	NA	NA	566	NM_011046	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.120000	0.786070	
mm_20815.1	chr2	144527345	144527545	-	1	NA	NA	NA	-47	NM_172859	241688	Mm.442156	NM_172859	ENSMUSG00000037259	Dzank1	2810039F03Rik|6330439K17Rik|6430408C01|AI851115|Ankrd64	double zinc ribbon and ankyrin repeat domains 1	protein-coding	0.075000	0.616915	
mm_92965.1	chr10	86057525	86057725	-	1	NA	NA	NA	35471	NM_001347151	69754	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	0.020000	0.547264	
mm_141277.1	chr17	27820548	27820748	-	1	NA	NA	NA	-106	NM_001271511	224647	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0.155000	0.781095	
mm_114963.1	chr13	97073467	97073667	+	1	NA	NA	NA	1924	NM_001100458	320557	Mm.458280	NM_001100458	ENSMUSG00000041817	Fam169a	B230112C05Rik|SLAP75	family with sequence similarity 169, member A	protein-coding	0.005000	0.353234	
mm_5793.1	chr1	51915873	51916073	-	1	NA	NA	NA	5	NM_001290982	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.170000	0.805970	
mm_117288.1	chr13	66441036	66441236	-	1	NA	NA	NA	-18	NM_001290196	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.020000	0.537313	
mm_2341.1	chr1	92858465	92858665	+	1	NA	NA	NA	8187	NR_029559	387167		NR_029559	ENSMUSG00000065470	Mir149	Mirn149|mir-149|mmu-mir-149	microRNA 149	ncRNA	0.015000	0.567164	
mm_15942.1	chr2	165810205	165810405	+	1	NA	NA	NA	47868	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.015000	0.557214	
mm_91662.1	chr10	42888365	42888565	-	1	NA	NA	NA	27953	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.005000	0.457711	
mm_169271.1	chr1	38620855	38621055	-	1	NA	NA	NA	6289	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.015000	0.472637	
mm_128618.1	chr15	58933568	58933768	-	1	NA	NA	NA	62	NM_175151	69694	Mm.383230	NM_175151	ENSMUSG00000050891	Tatdn1	2310079P03Rik|CDA11	TatD DNase domain containing 1	protein-coding	0.085000	0.636816	
mm_131111.1	chr16	5146871	5147071	+	1	NA	NA	NA	-138	NM_001127725	665119	Mm.102072	NM_001127725	ENSMUSG00000091712	Sec14l5	-	SEC14-like lipid binding 5	protein-coding	0.025000	0.592040	
mm_125369.1	chr15	39736516	39736716	+	1	NA	NA	NA	-9314	NM_001289506	75766	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0.015000	0.517413	
mm_135457.1	chr16	45724597	45724797	-	1	NA	NA	NA	-166	NM_019754	56370	Mm.24183	NM_019754	ENSMUSG00000022658	Tagln3	2700038H05Rik|2900005O10Rik|AI426007|Np25	transgelin 3	protein-coding	0.050000	0.557214	
mm_31474.1	chr4	50485193	50485393	+	1	NA	NA	NA	-639524	NM_001276355	242443	Mm.440095	NM_001033351	ENSMUSG00000039579	Grin3a	6430537F04|A830097C19Rik|NMDAR-L|NR3A|mKIAA1973	glutamate receptor ionotropic, NMDA3A	protein-coding	0.005000	0.333333	
mm_13618.1	chr2	113439954	113440154	+	1	NA	NA	NA	-1010	NM_001285459	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.010000	0.363184	
mm_64205.1	chr7	141475151	141475351	+	1	NA	NA	NA	15	NM_053082	64540	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.105000	0.701493	-96(GCTTTTCAAGGC,+,0.00)
mm_33405.1	chr4	129839154	129839354	+	1	NA	NA	NA	18546	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.005000	0.328358	
mm_20062.1	chr2	120352910	120353110	-	1	NA	NA	NA	123	NM_178851	269338	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	0.055000	0.631841	
mm_120360.1	chr14	64323883	64324083	+	1	NA	NA	NA	92973	NM_001253716	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.035000	0.597015	
mm_158724.1	chrX	162964467	162964667	-	1	NA	NA	NA	32	NM_009789	12309	Mm.6891	NM_009789	ENSMUSG00000040808	S100g	AU042539|CABP1|CaBP-D9K|Cabp9k|Calb3	S100 calcium binding protein G	protein-coding	0.010000	0.487562	-88(CCTTAAATAGTA,+,0.00),-35(GACTATAAAAGA,-,0.00)
mm_168183.1	chr10	59386816	59387016	+	1	NA	NA	NA	-16769	NM_023530	69836	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	0.040000	0.492537	-32(CTCTTTAAAAGA,-,0.00),-31(TCTTTAAAAGAG,+,0.00)
mm_146516.1	chr18	4198428	4198628	-	1	NA	NA	NA	32696	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.005000	0.487562	
mm_24237.1	chr3	88970619	88970819	+	1	NA	NA	NA	4907	NM_138679	192195	Mm.130752	NM_138679	ENSMUSG00000028053	Ash1l	8030453L17Rik|Ash1|E430018P19Rik|Kmt2h	ash1 (absent, small, or homeotic)-like (Drosophila)	protein-coding	0.030000	0.368159	
mm_89862.1	chr10	108162076	108162276	+	1	NA	NA	NA	-224	NM_027892	17931	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.135000	0.731343	
mm_94989.1	chr11	31871286	31871486	+	1	NA	NA	NA	446	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.065000	0.636816	
mm_18708.1	chr2	72054816	72055016	-	1	NA	NA	NA	299	NM_001204166	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.015000	0.502488	
mm_97024.1	chr11	72042371	72042571	+	1	NA	NA	NA	-31	NM_144526	109212	Mm.33118	NM_144526	ENSMUSG00000020808	Fam64a	2610008F03Rik|6720460F02Rik|AI115087|CATS	family with sequence similarity 64, member A	protein-coding	0.095000	0.651741	
mm_35580.1	chr4	41740889	41741089	-	1	NA	NA	NA	370	NM_001286540	18391	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0.085000	0.681592	
mm_2958.1	chr1	132865734	132865934	+	1	NA	NA	NA	-14521	NM_010732	16980	Mm.39640	NM_010732	ENSMUSG00000026443	Lrrn2	5730406J09Rik|NLRR-2	leucine rich repeat protein 2, neuronal	protein-coding	0.010000	0.442786	
mm_58641.1	chr7	6172414	6172614	+	1	NA	NA	NA	1	NM_001146024	72667	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0.050000	0.597015	
mm_166917.1	chr7	30445502	30445702	-	1	NA	NA	NA	-20	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.120000	0.791045	
mm_38278.1	chr4	136889921	136890121	-	1	NA	NA	NA	2893	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.025000	0.577114	
mm_72798.1	chr8	87218482	87218682	+	1	NA	NA	NA	-18732	NR_040697	100038706	Mm.334690	NR_040697	ENSMUSG00000099207	Gm10637	ENSMUSG00000074176	predicted gene 10637	ncRNA	0.010000	0.507463	
mm_99134.1	chr11	100319881	100320081	+	1	NA	NA	NA	32	NM_011508	20918	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.115000	0.726368	-28(GGCTATATAAGT,-,0.00)
mm_77693.1	chr8	126589359	126589559	-	1	NA	NA	NA	3977	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.005000	0.318408	
mm_109524.1	chr12	111535992	111536192	+	1	NA	NA	NA	-2009	NM_178041	217869	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.010000	0.467662	-81(GGATATTAAAGG,-,0.00)
mm_166821.1	chr7	18065843	18066043	+	1	NA	NA	NA	14	NM_001162523	67315	Mm.46089	NM_026087	ENSMUSG00000030366	Ceacam12	1600031J20Rik|Ceacam12-C1|Ceacam12-C3|Ceacam12C1|Ceacam12C3	carcinoembryonic antigen-related cell adhesion molecule 12	protein-coding	0.005000	0.472637	
mm_19072.1	chr2	77816586	77816786	-	1	NA	NA	NA	130	NM_178723	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.150000	0.805970	
mm_112628.1	chr13	15852438	15852638	+	1	NA	NA	NA	45295	NR_046131	328190	Mm.446957	NR_046131		A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0.000000	0.402985	
mm_136393.1	chr16	93147605	93147805	-	1	NA	NA	NA	205484	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.005000	0.482587	
mm_47392.1	chr5	123015875	123016075	-	1	NA	NA	NA	901	NM_175423	109305	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.025000	0.487562	
mm_47386.1	chr5	122990453	122990653	-	1	NA	NA	NA	1199	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.020000	0.462687	
mm_130919.1	chr15	102671728	102671928	-	1	NA	NA	NA	38	NR_030460	751542		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	0.055000	0.646766	
mm_70752.1	chr8	19681774	19681974	+	1	NA	NA	NA	-47702	NM_001270553	100861668	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.005000	0.348259	
mm_52708.1	chr6	119479391	119479591	+	1	NA	NA	NA	-177	NM_133940	101358	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.170000	0.786070	
mm_859.1	chr1	52132494	52132694	+	1	NA	NA	NA	12972	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.010000	0.412935	-61(TCCCTTTAAAGG,-,0.00),-60(CCCTTTAAAGGC,+,0.00),-60(CCCTTTAAAGGC,-,0.00),-59(CCTTTAAAGGCC,+,0.00)
mm_159249.1	chr2	151974029	151974229	-	1	NA	NA	NA	-148	NM_028666	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.055000	0.597015	
mm_89973.1	chr10	111506851	111507051	+	1	NA	NA	NA	665	NM_009344	21664	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0.065000	0.631841	
mm_133859.1	chr16	96280888	96281088	+	1	NA	NA	NA	-44	NM_033149	93961	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	0.085000	0.666667	
mm_22218.1	chr2	174341592	174341792	-	1	NA	NA	NA	11603	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.015000	0.502488	
mm_140223.1	chr17	83976046	83976246	+	1	NA	NA	NA	-22406	NR_130994	78148	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.010000	0.577114	
mm_42821.1	chr5	122093420	122093620	+	1	NA	NA	NA	-7460	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.035000	0.557214	
mm_93878.1	chr10	125291508	125291708	-	1	NA	NA	NA	36927	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.000000	0.487562	
mm_53441.1	chr6	134262322	134262522	+	1	NA	NA	NA	-133907	NM_025778	66813	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.020000	0.462687	
mm_34692.1	chr4	152008918	152009118	+	1	NA	NA	NA	127	NM_001033352	242785	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	0.140000	0.726368	
mm_12819.1	chr2	80316758	80316958	+	1	NA	NA	NA	1392	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.010000	0.502488	
mm_113188.1	chr13	24942601	24942801	+	1	NA	NA	NA	-451	NM_008156	14756	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0.035000	0.532338	
mm_152732.1	chr19	18936398	18936598	-	1	NA	NA	NA	64619	NM_146095	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.005000	0.368159	
mm_35920.1	chr4	53031620	53031820	-	1	NA	NA	NA	19840	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.005000	0.293532	
mm_99942.1	chr11	111066064	111066264	+	1	NA	NA	NA	0	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.070000	0.621891	
mm_84707.1	chr9	72985190	72985390	-	1	NA	NA	NA	86	NM_001198789	546143	Mm.260946	NM_001198789	ENSMUSG00000086158	Ccpg1os	EG546143|Gm5918	cell cycle progression 1, opposite strand	protein-coding	0.075000	0.582090	
mm_12115.1	chr2	61595005	61595205	+	1	NA	NA	NA	2008	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.005000	0.442786	
mm_39696.1	chr5	27072561	27072761	+	1	NA	NA	NA	23462	NM_207282	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.000000	0.402985	
mm_42606.1	chr5	117841748	117841948	+	1	NA	NA	NA	-24991	NM_008712	18125	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.065000	0.542289	-72(CCCTTTTAATGA,-,0.00)
mm_30720.1	chr4	13743205	13743405	+	1	NA	NA	NA	3	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.120000	0.691542	
mm_68394.1	chr7	109525650	109525850	-	1	NA	NA	NA	5618	NR_028079	100302499	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	0.020000	0.487562	
mm_144971.1	chr18	37830503	37830703	+	1	NA	NA	NA	11057	NM_033583	93708	Mm.247203	NM_033583	ENSMUSG00000102543	Pcdhgc5	-	protocadherin gamma subfamily C, 5	protein-coding	0.005000	0.348259	
mm_67639.1	chr7	84409965	84410165	-	1	NA	NA	NA	-27	NM_007488	11864	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding	0.150000	0.781095	
mm_157186.1	chrX	10595635	10595835	-	1	NA	NA	NA	110619	NM_019634	21912	Mm.18590	NM_019634	ENSMUSG00000058254	Tspan7	1200014P11Rik|A15|AI323365|Cd231|Mxs1|PE31|R74651|TALLA|Tm4sf2	tetraspanin 7	protein-coding	0.025000	0.517413	65(CTTTTTAAAAAC,+,0.00)
mm_81289.1	chr9	108306788	108306988	+	1	NA	NA	NA	91	NM_001313962	11848	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	0.105000	0.676617	
mm_139737.1	chr17	59071277	59071477	+	1	NA	NA	NA	-58055	NM_026497	67993	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.000000	0.457711	
mm_80741.1	chr9	94743194	94743394	+	1	NA	NA	NA	-8535	NR_106116	102465763		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.005000	0.343284	
mm_77360.1	chr8	119661218	119661418	-	1	NA	NA	NA	-5047	NM_023395	67866	Mm.87599	NM_023395	ENSMUSG00000023336	Wfdc1	2310058A03Rik|ps20	WAP four-disulfide core domain 1	protein-coding	0.035000	0.656716	
mm_74020.1	chr8	121581635	121581835	+	1	NA	NA	NA	-2929	NM_133765	76454	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0.025000	0.502488	
mm_62068.1	chr7	92637130	92637330	+	1	NA	NA	NA	-88	NM_028665	73845	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	0.070000	0.512438	
mm_89199.1	chr10	86348114	86348314	+	1	NA	NA	NA	47802	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.020000	0.398010	
mm_117695.1	chr13	94294954	94295154	-	1	NA	NA	NA	-9223	NM_001346609	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.015000	0.532338	
mm_149824.1	chr19	24476643	24476843	+	1	NA	NA	NA	731	NM_026520	68034	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding	0.025000	0.482587	
mm_51741.1	chr6	87346969	87347169	+	1	NA	NA	NA	3846	NM_025466	66283	Mm.46414	NM_025466	ENSMUSG00000030050	Gkn1	2200002K21Rik|AMP-18|BRICD1|Fov	gastrokine 1	protein-coding	0.020000	0.507463	
mm_89027.1	chr10	82699023	82699223	+	1	NA	NA	NA	116	NM_001081218	67933	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838	host cell factor C2	protein-coding	0.130000	0.756219	
mm_158538.1	chrX	143933016	143933216	-	1	NA	NA	NA	8	NM_001110222	13193	Mm.12871	NM_010025	ENSMUSG00000031285	Dcx	Dbct	doublecortin	protein-coding	0.015000	0.492537	
mm_14974.1	chr2	152104825	152105025	+	1	NA	NA	NA	-599	NM_029688	76650	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.020000	0.472637	
mm_13416.1	chr2	104122704	104122904	+	1	NA	NA	NA	35	NM_026634	68243	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0.110000	0.691542	
mm_108041.1	chr12	73901311	73901511	+	1	NA	NA	NA	87	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.020000	0.472637	
mm_158499.1	chrX	142390240	142390440	-	1	NA	NA	NA	195	NM_001033600	50790	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	0.070000	0.666667	-19(CCTCTTAAGGCC,+,0.00)
mm_52929.1	chr6	122928899	122929099	+	1	NA	NA	NA	7151	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.000000	0.353234	
mm_32773.1	chr4	116699072	116699272	+	1	NA	NA	NA	9213	NM_025962	67096	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0.000000	0.437811	
mm_153086.1	chr19	32388373	32388573	-	1	NA	NA	NA	-19	NM_144792	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.150000	0.771144	
mm_130003.1	chr15	86214192	86214392	-	1	NA	NA	NA	-167	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.115000	0.651741	
mm_171031.1	chr2	89707076	89707276	-	1	NA	NA	NA	14933	NM_207568	404331	Mm.377275	NM_207568	ENSMUSG00000110819	Olfr1252	GA_x5J8B7W62NC-992588-991951	olfactory receptor 1252	protein-coding	0.005000	0.477612	-35(CCCCTTATAAGC,-,0.00),-33(CCTTATAAGCAC,+,0.00)
mm_88446.1	chr10	77548457	77548657	+	1	NA	NA	NA	18209	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.010000	0.542289	
mm_98922.1	chr11	98348540	98348740	+	1	NA	NA	NA	234	NM_144828	19049	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0.055000	0.711443	
mm_107473.1	chr12	37880098	37880298	+	1	NA	NA	NA	-507	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	0.020000	0.567164	
mm_132795.1	chr16	45093828	45094028	+	1	NA	NA	NA	-125	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.015000	0.393035	
mm_105267.1	chr11	102363598	102363798	-	1	NA	NA	NA	1583	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.000000	0.517413	
mm_22109.1	chr2	170121981	170122181	-	1	NA	NA	NA	9139	NM_001033299	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.005000	0.522388	
mm_87964.1	chr10	63386518	63386718	+	1	NA	NA	NA	55	NM_013888	30045	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.060000	0.562189	
mm_129137.1	chr15	76199747	76199947	-	1	NA	NA	NA	-12	NM_001163549	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.030000	0.656716	
mm_55936.1	chr6	84593819	84594019	-	1	NA	NA	NA	-11	NM_001177713	232174	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.035000	0.651741	-33(GGCTATAAAGGG,-,0.00)
mm_131774.1	chr16	22894706	22894906	+	1	NA	NA	NA	-420	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.020000	0.522388	
mm_25433.1	chr3	107896190	107896390	+	1	NA	NA	NA	-77	NR_015459	329735	Mm.270500	NM_177858	ENSMUSG00000086968	4933431E20Rik	-	RIKEN cDNA 4933431E20 gene	ncRNA	0.045000	0.572139	
mm_139537.1	chr17	56709887	56710087	+	1	NA	NA	NA	6934	NM_178926	106639	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0.010000	0.606965	
mm_3647.1	chr1	153009584	153009784	+	1	NA	NA	NA	54583	NM_175460	226518	Mm.40548	NM_175460	ENSMUSG00000042751	Nmnat2	AI843915|D030041I09Rik|PNAT1|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding	0.020000	0.502488	-33(CCATATAAAAAC,-,0.00)
mm_131367.1	chr16	13818769	13818969	+	1	NA	NA	NA	-382	NM_010946	18203	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0.055000	0.562189	
mm_88920.1	chr10	81183207	81183407	+	1	NA	NA	NA	44	NM_001190473	13144	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.040000	0.552239	
mm_113131.1	chr13	24614496	24614696	+	1	NA	NA	NA	-10	NM_001286101	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.020000	0.542289	
mm_24799.1	chr3	95549980	95550180	+	1	NA	NA	NA	-9597	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.010000	0.432836	
mm_158940.1	chr1	78511044	78511244	+	1	NA	NA	NA	84	NM_026713	68393	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	0.020000	0.462687	
mm_162979.1	chr11	19996853	19997053	-	1	NA	NA	NA	72511	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.030000	0.547264	
mm_55688.1	chr6	72730940	72731140	-	1	NA	NA	NA	58005	NM_001079822	21415	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.015000	0.402985	
mm_45692.1	chr5	81800918	81801118	-	1	NA	NA	NA	323695	NR_138557	67327	Mm.87058	NR_138557		1700031L13Rik	-	RIKEN cDNA 1700031L13 gene	ncRNA	0.010000	0.393035	
mm_10385.1	chr2	12301208	12301408	+	1	NA	NA	NA	62	NR_040353	338535	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.030000	0.462687	
mm_145314.1	chr18	53937246	53937446	+	1	NA	NA	NA	75233	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.015000	0.398010	
mm_58964.1	chr7	18958926	18959126	+	1	NA	NA	NA	-28498	NM_194064	378430	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos homolog 2 (Drosophila)	protein-coding	0.005000	0.373134	15(TCCTTTATAAGA,-,0.00)
mm_66120.1	chr7	31051400	31051600	-	1	NA	NA	NA	-46	NM_022007	57780	Mm.41770	NM_022007	ENSMUSG00000036578	Fxyd7	1110035I01Rik	FXYD domain-containing ion transport regulator 7	protein-coding	0.055000	0.701493	
mm_49782.1	chr6	35177519	35177719	+	1	NA	NA	NA	3	NM_027513	70699	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	0.135000	0.751244	
mm_132174.1	chr16	32375880	32376080	+	1	NA	NA	NA	-24526	NM_001160402	277203	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0.005000	0.442786	
mm_141046.1	chr17	25433464	25433664	-	1	NA	NA	NA	219	NM_021415	58226	Mm.268378	NM_021415	ENSMUSG00000024112	Cacna1h	Cav3.2|MNCb-1209|alpha13.2	calcium channel, voltage-dependent, T type, alpha 1H subunit	protein-coding	0.105000	0.731343	
mm_54994.1	chr6	48770759	48770959	-	1	NA	NA	NA	-8	NM_031247	83408	Mm.333050	NM_031247	ENSMUSG00000039264	Gimap3	2010110D23Rik|Gimap5|Ian4	GTPase, IMAP family member 3	protein-coding	0.010000	0.507463	
mm_165053.1	chr19	41263315	41263515	+	1	NA	NA	NA	589	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.085000	0.636816	
mm_159886.1	chr6	28134450	28134650	-	1	NA	NA	NA	-181	NM_008174	14823	Mm.320732	NM_008174	ENSMUSG00000024211	Grm8	A230002O04|Gprc1h|mGluR8	glutamate receptor, metabotropic 8	protein-coding	0.030000	0.512438	
mm_104130.1	chr11	86807494	86807694	-	1	NA	NA	NA	66	NM_026191	67487	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.125000	0.676617	
mm_110205.1	chr12	27341554	27341754	-	1	NA	NA	NA	1064	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.115000	0.711443	
mm_160138.1	chr7	30879154	30879354	-	1	NA	NA	NA	-226	NM_009845	12483	Mm.260994	NM_009845	ENSMUSG00000030577	Cd22	A530093D23|Lyb-8|Lyb8	CD22 antigen	protein-coding	0.015000	0.577114	
mm_11363.1	chr2	30963024	30963224	+	1	NA	NA	NA	4794	NM_144884	30931	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0.015000	0.542289	
mm_46084.1	chr5	92346753	92346953	-	1	NA	NA	NA	2036	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.010000	0.328358	
mm_114590.1	chr13	75756239	75756439	+	1	NA	NA	NA	48855	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.020000	0.462687	
mm_128387.1	chr15	43135947	43136147	-	1	NA	NA	NA	34771	NM_172815	239405	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.010000	0.303483	35(TTTTTTAAAGTG,+,0.00)
mm_14305.1	chr2	129122785	129122985	+	1	NA	NA	NA	-6815	NM_025395	66170	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	0.030000	0.422886	12(GGTTCTTAAAGC,-,0.00)
mm_130399.1	chr15	97975964	97976164	-	1	NA	NA	NA	11835	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.040000	0.517413	
mm_113839.1	chr13	47193777	47193977	+	1	NA	NA	NA	-126	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.055000	0.592040	
mm_82078.1	chr9	122999108	122999308	+	1	NA	NA	NA	-22118	NM_025339	66079	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	0.010000	0.303483	
mm_60864.1	chr7	45897402	45897602	+	1	NA	NA	NA	433	NM_144801	70209	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	0.030000	0.601990	
mm_127097.1	chr15	97790818	97791018	+	1	NA	NA	NA	6553	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.015000	0.492537	
mm_144079.1	chr17	91092890	91093090	-	1	NA	NA	NA	-188	NM_020252	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.030000	0.606965	
mm_167168.1	chr7	136465411	136465611	+	1	NA	NA	NA	-116096	NR_040459	330664	Mm.127762	NR_040459	ENSMUSG00000109633	C230079O03Rik	C230079O03	RIKEN cDNA C230079O03 gene	ncRNA	0.015000	0.412935	
mm_35940.1	chr4	53065690	53065890	-	1	NA	NA	NA	53910	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.015000	0.383085	12(TTTTAAAAAGCC,+,0.00)
mm_946.1	chr1	56973934	56974134	+	1	NA	NA	NA	2565	NR_024325	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0.010000	0.308458	-6(TTTTTTAAAGCA,+,0.00)
mm_11922.1	chr2	52072739	52072939	+	1	NA	NA	NA	2	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.165000	0.781095	
mm_14451.1	chr2	131170849	131171049	+	1	NA	NA	NA	3861	NM_027641	70997	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	0.015000	0.502488	-15(GGGTCTAAAAGA,-,0.00)
mm_54767.1	chr6	41377511	41377711	-	1	NA	NA	NA	2	NM_011645	22073	Mm.425318	NM_011645	ENSMUSG00000071519	Prss3	MTG|TRY4|Tb|Try3	protease, serine 3	protein-coding	0.000000	0.447761	
mm_63467.1	chr7	127573769	127573969	+	1	NA	NA	NA	521	NM_026888	68961	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	0.045000	0.616915	
mm_159437.1	chr3	121993561	121993761	+	1	NA	NA	NA	40335	NM_172525	214137	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.015000	0.378109	
mm_166461.1	chr5	139924154	139924354	-	1	NA	NA	NA	16311	NM_175522	243312	Mm.237102	NM_175522	ENSMUSG00000048988	Elfn1	A930017N06Rik|AI197272|Ppp1r28	leucine rich repeat and fibronectin type III, extracellular 1	protein-coding	0.015000	0.447761	
mm_29776.1	chr3	127282360	127282560	-	1	NA	NA	NA	121155	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.005000	0.442786	-30(CCCTTAAAACAG,+,0.00)
mm_65945.1	chr7	30417381	30417581	-	1	NA	NA	NA	2373	NM_011827	23900	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	0.020000	0.497512	
mm_2531.1	chr1	106934435	106934635	+	1	NA	NA	NA	86	NM_027971	71869	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	0.010000	0.477612	
mm_68588.1	chr7	116034224	116034424	-	1	NA	NA	NA	-3277	NM_001025560	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.075000	0.691542	
mm_126716.1	chr15	85336241	85336441	+	1	NA	NA	NA	-40	NM_016843	54138	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.085000	0.676617	
mm_91806.1	chr10	53913575	53913775	-	1	NA	NA	NA	162121	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.000000	0.253731	
mm_165517.1	chr2	173291027	173291227	-	1	NA	NA	NA	-14594	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.035000	0.552239	
mm_135447.1	chr16	45653956	45654156	-	1	NA	NA	NA	62	NM_145389	212998	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	0.050000	0.621891	
mm_15998.1	chr2	167189568	167189768	+	1	NA	NA	NA	-850	NM_008420	16500	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	0.095000	0.686567	
mm_13123.1	chr2	91664374	91664574	+	1	NA	NA	NA	11266	NM_146124	228359	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	0.005000	0.432836	
mm_55956.1	chr6	85374535	85374735	-	1	NA	NA	NA	-1	NM_001003955	52055	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0.140000	0.820896	
mm_157245.1	chrX	18461204	18461404	-	1	NA	NA	NA	93	NR_132634	75905	Mm.159617	NM_175228	ENSMUSG00000037358	4930578C19Rik	-	RIKEN cDNA 4930578C19 gene	protein-coding	0.030000	0.597015	
mm_58096.1	chr6	137537569	137537769	-	1	NA	NA	NA	-17774	NM_001271589	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.015000	0.417910	41(GGCCCTTTATGG,-,0.00),43(CCCTTTATGGTA,+,0.00)
mm_2620.1	chr1	120602285	120602485	+	1	NA	NA	NA	-102	NM_010133	13798	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1|engrailed-1	engrailed 1	protein-coding	0.055000	0.527363	
mm_59821.1	chr7	29238393	29238593	+	1	NA	NA	NA	170	NM_029887	77254	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	0.125000	0.711443	
mm_19016.1	chr2	76906605	76906805	-	1	NA	NA	NA	75842	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.015000	0.363184	
mm_150904.1	chr19	45749114	45749314	+	1	NA	NA	NA	349	NM_008723	18150	Mm.1406	NM_008723	ENSMUSG00000056209	Npm3	Nub1	nucleoplasmin 3	protein-coding	0.110000	0.706468	
mm_104617.1	chr11	97280438	97280638	-	1	NA	NA	NA	38	NM_008942	19155	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0.135000	0.830846	
mm_154141.1	chr19	57667999	57668199	-	1	NA	NA	NA	57065	NM_181415	226255	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0.030000	0.562189	
mm_81831.1	chr9	118079173	118079373	+	1	NA	NA	NA	38751	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.010000	0.323383	
mm_66563.1	chr7	45239192	45239392	-	1	NA	NA	NA	-177	NM_001290804	12493	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0.020000	0.597015	
mm_37394.1	chr4	121098064	121098264	-	1	NA	NA	NA	79	NM_172700	230709	Mm.34399	NM_172700	ENSMUSG00000043207	Zmpste24	A530043O15Rik|D030046F19|FACE1|Face-1|MADB|STE24|Ste24p	zinc metallopeptidase, STE24	protein-coding	0.040000	0.522388	
mm_22779.1	chr3	20980193	20980393	+	1	NA	NA	NA	-613116	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0.000000	0.373134	
mm_14639.1	chr2	136781839	136782039	+	1	NA	NA	NA	68489	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.005000	0.368159	
mm_110844.1	chr12	73046367	73046567	-	1	NA	NA	NA	245	NM_009189	20471	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0.115000	0.706468	
mm_158595.1	chrX	151017174	151017374	-	1	NA	NA	NA	19	NM_001168600	237107	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	0.075000	0.562189	
mm_59141.1	chr7	24254678	24254878	+	1	NA	NA	NA	-16	NM_018791	54678	Mm.468052	NM_018791	ENSMUSG00000030486	Zfp108	-	zinc finger protein 108	protein-coding	0.035000	0.567164	
mm_142317.1	chr17	43017453	43017653	-	1	NA	NA	NA	998	NM_178589	94185	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0.115000	0.641791	
mm_108946.1	chr12	102283055	102283255	+	1	NA	NA	NA	81	NM_177620	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.125000	0.731343	
mm_39444.1	chr5	17574130	17574330	+	1	NA	NA	NA	-586	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.040000	0.467662	
mm_103215.1	chr11	70654825	70655025	-	1	NA	NA	NA	-275	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.020000	0.447761	
mm_4291.1	chr1	171766833	171767033	+	1	NA	NA	NA	-199	NM_013730	27218	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	0.000000	0.452736	
mm_133173.1	chr16	72027560	72027760	+	1	NA	NA	NA	206667	NR_131116	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0.030000	0.452736	
mm_142628.1	chr17	47395659	47395859	-	1	NA	NA	NA	4847	NM_008189	14913	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	0.035000	0.621891	
mm_76985.1	chr8	107048066	107048266	-	1	NA	NA	NA	448	NM_026513	68023	Mm.482335	NM_026513	ENSMUSG00000078931	Pdf	2610019N19Rik	peptide deformylase (mitochondrial)	protein-coding	0.090000	0.641791	
mm_46760.1	chr5	112251096	112251296	-	1	NA	NA	NA	1322	NM_001312884	12959	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0.020000	0.567164	
mm_157145.1	chrX	9460901	9461101	-	1	NA	NA	NA	8323	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.378109	
mm_47222.1	chr5	121191283	121191483	-	1	NA	NA	NA	14	NM_001109992	19247	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0.185000	0.840796	
mm_145890.1	chr18	65582257	65582457	+	1	NA	NA	NA	2127	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.015000	0.507463	57(AGCCCTAAAAGA,-,0.00)
mm_142391.1	chr17	44880736	44880936	-	1	NA	NA	NA	49	NM_029257	75341	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0.010000	0.432836	
mm_150517.1	chr19	39035220	39035420	+	1	NA	NA	NA	-25686	NM_028191	72303	Mm.482578	NM_028191	ENSMUSG00000067231	Cyp2c65	2210009K14Rik	cytochrome P450, family 2, subfamily c, polypeptide 65	protein-coding	0.005000	0.363184	
mm_138212.1	chr17	34306494	34306694	+	1	NA	NA	NA	727	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.005000	0.537313	
mm_5257.1	chr1	16656815	16657015	-	1	NA	NA	NA	-50	NM_026456	67923	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	0.090000	0.656716	
mm_35632.1	chr4	43508624	43508824	-	1	NA	NA	NA	1698	NM_139305	230099	Mm.283682	NM_139305	ENSMUSG00000028463	Car9	CAIX|Ca9|MN/CA9	carbonic anhydrase 9	protein-coding	0.045000	0.621891	
mm_121962.1	chr14	25459969	25460169	-	1	NA	NA	NA	884	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.050000	0.537313	
mm_10160.1	chr2	4401008	4401208	+	1	NA	NA	NA	132	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.070000	0.651741	
mm_71535.1	chr8	46986804	46987004	+	1	NA	NA	NA	17	NM_177304	320981	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.000000	0.522388	-77(CCCTTTAAATTC,+,0.00)
mm_25849.1	chr3	129532382	129532582	+	1	NA	NA	NA	96	NM_130450	170439	Mm.314113	NM_130450	ENSMUSG00000041220	Elovl6	C77826|FAE|LCE	ELOVL family member 6, elongation of long chain fatty acids (yeast)	protein-coding	0.055000	0.621891	
mm_159770.1	chr5	100159674	100159874	-	1	NA	NA	NA	34	NM_182841	231503	Mm.99790	NM_182841	ENSMUSG00000050640	Tmem150c	-	transmembrane protein 150C	protein-coding	0.030000	0.522388	
mm_118627.1	chr14	21194480	21194680	+	1	NA	NA	NA	118428	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.025000	0.497512	
mm_31799.1	chr4	63982546	63982746	+	1	NA	NA	NA	64369	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding	0.025000	0.467662	
mm_20441.1	chr2	129309020	129309220	-	1	NA	NA	NA	852	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.010000	0.407960	
mm_75215.1	chr8	39605532	39605732	-	1	NA	NA	NA	37046	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.398010	
mm_167851.1	chrX	8145165	8145365	-	1	NA	NA	NA	-162	NR_033561	70226	Mm.391639	NR_033561	ENSMUSG00000055188	Rbm3os	2900002K06Rik	RNA binding motif protein 3, opposite strand	ncRNA	0.055000	0.552239	
mm_112460.1	chr13	5866348	5866548	+	1	NA	NA	NA	4959	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.005000	0.462687	
mm_86894.1	chr10	22302880	22303080	+	1	NA	NA	NA	-3740	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.000000	0.412935	
mm_143653.1	chr17	79615367	79615567	-	1	NA	NA	NA	567	NM_201361	381110	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.090000	0.736318	
mm_137991.1	chr17	33637706	33637906	+	1	NA	NA	NA	-250	NM_001002842	378460	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	0.005000	0.462687	-45(CTCTTTAGAGAC,+,0.00)
mm_127619.1	chr15	102460455	102460655	+	1	NA	NA	NA	1385	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.035000	0.616915	
mm_21714.1	chr2	164608583	164608783	-	1	NA	NA	NA	4703	NM_001276432	277343	Mm.383292	NM_001080550	ENSMUSG00000070533	Wfdc8	Gm706	WAP four-disulfide core domain 8	protein-coding	0.035000	0.631841	
mm_31529.1	chr4	55044795	55044995	+	1	NA	NA	NA	96950	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.000000	0.422886	
mm_131099.1	chr16	4964485	4964685	+	1	NA	NA	NA	296	NR_073370	74684	Mm.374835	NM_001271586		4930451G09Rik	-	RIKEN cDNA 4930451G09 gene	protein-coding	0.075000	0.651741	
mm_102703.1	chr11	66339491	66339691	-	1	NA	NA	NA	-171040	NM_001099633	237806	Mm.264210	NM_001099633	ENSMUSG00000056752	Dnah9	9030022M04|A230091C01|C230051G16|D11Ertd686e|Dnahc9|mKIAA0357	dynein, axonemal, heavy chain 9	protein-coding	0.000000	0.373134	-89(GGCTTTAAAAAC,-,0.00),-87(CTTTAAAAACAC,+,0.00)
mm_119322.1	chr14	37067948	37068148	+	1	NA	NA	NA	-1	NM_173418	239038	Mm.134302	NM_173418	ENSMUSG00000043418	Lrit2	A930010E21Rik|Lrrc22	leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	protein-coding	0.005000	0.417910	
mm_94484.1	chr11	6626056	6626256	+	1	NA	NA	NA	-89	NM_134011	21379	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	0.100000	0.651741	
mm_130062.1	chr15	89187326	89187526	-	1	NA	NA	NA	-1889	NR_105923	102465578		NR_105923	ENSMUSG00000098663	Mir6958	Gm27581|mmu-mir-6958	microRNA 6958	ncRNA	0.040000	0.621891	
mm_156390.1	chrX	139800853	139801053	+	1	NA	NA	NA	145	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.035000	0.512438	
mm_148974.1	chr19	7557407	7557607	+	1	NA	NA	NA	48	NM_139269	225845	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.050000	0.621891	
mm_96404.1	chr11	67250876	67251076	+	1	NA	NA	NA	13164	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.005000	0.442786	85(CTGCCTATAAGC,-,0.00)
mm_132737.1	chr16	43889787	43889987	+	1	NA	NA	NA	-15	NM_027801	212153	Mm.209835	NM_027801	ENSMUSG00000022701	Ccdc191	2610015P09Rik|8430422M09Rik|AU040712	coiled-coil domain containing 191	protein-coding	0.050000	0.597015	
mm_87315.1	chr10	42812346	42812546	+	1	NA	NA	NA	-48066	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.015000	0.407960	
mm_131926.1	chr16	23387436	23387636	+	1	NA	NA	NA	-41597	NM_001004151	239766	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0.005000	0.482587	
mm_87591.1	chr10	57486442	57486642	+	1	NA	NA	NA	157	NM_008297	15500	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	0.095000	0.621891	
mm_17287.1	chr2	26140443	26140643	-	1	NA	NA	NA	-37	NM_001256521	109299	Mm.389259	NM_001256521		C330006A16Rik	AI551216	RIKEN cDNA C330006A16 gene	protein-coding	0.135000	0.686567	
mm_164615.1	chr17	31161419	31161619	-	1	NA	NA	NA	3534	NM_009362	21784	Mm.2854	NM_009362	ENSMUSG00000024032	Tff1	Bcei|PS2	trefoil factor 1	protein-coding	0.010000	0.522388	
mm_133851.1	chr16	96219388	96219588	+	1	NA	NA	NA	-16313	NM_001122993	93961	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	0.000000	0.452736	
mm_64852.1	chr7	13034539	13034739	-	1	NA	NA	NA	138	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.095000	0.661692	
mm_133877.1	chr16	96441133	96441333	+	1	NA	NA	NA	2381	NM_008405	16415	Mm.12872	NM_008405	ENSMUSG00000000157	Itgb2l	5033406G21Rik|pactolus	integrin beta 2-like	protein-coding	0.025000	0.502488	
mm_120182.1	chr14	61309737	61309937	+	1	NA	NA	NA	84	NM_177337	219144	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	0.015000	0.527363	
mm_75268.1	chr8	40659813	40660013	-	1	NA	NA	NA	-15164	NM_010086	13526	Mm.67403	NM_010086	ENSMUSG00000046723	Adam24	Dtgn5	a disintegrin and metallopeptidase domain 24 (testase 1)	protein-coding	0.025000	0.393035	
mm_90289.1	chr10	123432468	123432668	+	1	NA	NA	NA	168492	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	0.005000	0.338308	
mm_138552.1	chr17	35264743	35264943	+	1	NA	NA	NA	1720	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.000000	0.432836	
mm_173261.1	chrX	9487854	9488054	-	1	NA	NA	NA	-18630	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.477612	-34(CCCTTTATAAGC,+,0.00),-34(CCCTTTATAAGC,-,0.00),-32(CTTTATAAGCGC,+,0.00)
mm_142259.1	chr17	39843539	39843739	-	1	NA	NA	NA	642	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.085000	0.651741	
mm_102394.1	chr11	58999285	58999485	-	1	NA	NA	NA	21292	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.040000	0.676617	
mm_131046.1	chr16	3908961	3909161	+	1	NA	NA	NA	52	NM_029738	76779	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	0.080000	0.641791	
mm_78164.1	chr9	21028171	21028371	+	1	NA	NA	NA	-1102	NM_023892	78369	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.010000	0.447761	
mm_52984.1	chr6	123263780	123263980	+	1	NA	NA	NA	1773	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.005000	0.378109	
mm_130981.1	chr15	103344649	103344849	-	1	NA	NA	NA	-4663	NM_013866	29813	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.010000	0.562189	
mm_10978.1	chr2	25823052	25823252	+	1	NA	NA	NA	-1	NM_029959	77704	Mm.159974	NM_029959	ENSMUSG00000023210	Lcn9	9230102I19Rik	lipocalin 9	protein-coding	0.015000	0.572139	
mm_3216.1	chr1	135845307	135845507	+	1	NA	NA	NA	4546	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.015000	0.522388	
mm_88044.1	chr10	67538381	67538581	+	1	NA	NA	NA	551	NM_001347458	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.060000	0.646766	
mm_47150.1	chr5	120588533	120588733	-	1	NA	NA	NA	-20	NM_145853	252972	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.095000	0.711443	
mm_124630.1	chr15	4026462	4026662	+	1	NA	NA	NA	134	NM_024188	67041	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	0.090000	0.691542	
mm_158659.1	chrX	157414682	157414882	-	1	NA	NA	NA	504	NM_011077	18675	Mm.2529	NM_011077	ENSMUSG00000057457	Phex	Gy|HPDR|HPDR1|Hyp|PEX	phosphate regulating endopeptidase homolog, X-linked	protein-coding	0.025000	0.487562	
mm_35249.1	chr4	19877564	19877764	-	1	NA	NA	NA	44902	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.010000	0.343284	
mm_130341.1	chr15	97731323	97731523	-	1	NA	NA	NA	-18	NM_001168693	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.015000	0.577114	50(GTCTTTAAAAGG,-,0.00),51(TCTTTAAAAGGA,+,0.00)
mm_141070.1	chr17	25832828	25833028	-	1	NA	NA	NA	433	NM_019719	56424	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	0.115000	0.691542	
mm_91093.1	chr10	19062033	19062233	-	1	NA	NA	NA	-46723	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.015000	0.462687	
mm_94786.1	chr11	22184417	22184617	+	1	NA	NA	NA	102278	NM_153078	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0.000000	0.527363	
mm_71912.1	chr8	70089344	70089544	+	1	NA	NA	NA	5915	NM_177900	330790	Mm.152048	NM_177900	ENSMUSG00000007594	Hapln4	9330174O11|Bral2|Lpr4	hyaluronan and proteoglycan link protein 4	protein-coding	0.010000	0.487562	
mm_42484.1	chr5	115470775	115470975	+	1	NA	NA	NA	4609	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.035000	0.592040	
mm_44595.1	chr5	24995802	24996002	-	1	NA	NA	NA	-149	NM_001310480	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.020000	0.487562	-19(TCTTAAAGAGAC,+,0.00)
mm_59507.1	chr7	27560441	27560641	+	1	NA	NA	NA	65	NM_001122767	66367	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	0.010000	0.616915	
mm_165423.1	chr2	151459057	151459257	+	1	NA	NA	NA	16994	NM_198655	381393	Mm.280614	NM_198655	ENSMUSG00000061525	4921509C19Rik	Gm1005	RIKEN cDNA 4921509C19 gene	protein-coding	0.025000	0.567164	
mm_170631.1	chr19	8033923	8034123	+	1	NA	NA	NA	-67996	NM_134256	171405	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	Oat9|mOAT6-L|mOAT6-S	solute carrier family 22, member 27	protein-coding	0.035000	0.532338	-38(GGCTATAAAAGG,-,0.00)
mm_171115.1	chr3	138396018	138396218	+	1	NA	NA	NA	-19379	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding	0.020000	0.467662	
mm_135615.1	chr16	52271173	52271373	-	1	NA	NA	NA	181808	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.283582	
mm_116085.1	chr13	28538313	28538513	-	1	NA	NA	NA	172460	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.005000	0.422886	
mm_91458.1	chr10	34044210	34044410	-	1	NA	NA	NA	3	NM_001081165	270711	Mm.303077	NM_001081165	ENSMUSG00000039508	Fam26d	4732454E20Rik|AI586164|Gm643	family with sequence similarity 26, member D	protein-coding	0.010000	0.437811	
mm_157009.1	chrX	7605244	7605444	-	1	NA	NA	NA	76	NM_138603	54638	Mm.288192	NM_138603	ENSMUSG00000031143	Ccdc22	AI481216|DXImx40e|Ppp1r3f|Sfc22	coiled-coil domain containing 22	protein-coding	0.080000	0.587065	
mm_8380.1	chr1	151250722	151250922	-	1	NA	NA	NA	-93676	NM_001039512	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.020000	0.517413	
mm_147745.1	chr18	61131033	61131233	-	1	NA	NA	NA	13665	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.015000	0.527363	
mm_92032.1	chr10	62486461	62486661	-	1	NA	NA	NA	37	NM_001113355	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.145000	0.786070	
mm_52221.1	chr6	103510884	103511084	+	1	NA	NA	NA	108	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.050000	0.616915	
mm_6365.1	chr1	72216772	72216972	-	1	NA	NA	NA	-4565	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.025000	0.527363	
mm_80659.1	chr9	90054485	90054685	+	1	NA	NA	NA	318	NM_001312649	13036	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.070000	0.696517	
mm_59857.1	chr7	29983830	29984030	+	1	NA	NA	NA	-25	NM_001167873	243905	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	0.105000	0.696517	
mm_101412.1	chr11	28584124	28584324	-	1	NA	NA	NA	100	NM_001166661	216613	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	0.055000	0.656716	
mm_101923.1	chr11	50200832	50201032	-	1	NA	NA	NA	9888	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.025000	0.577114	
mm_47738.1	chr5	130247950	130248150	-	1	NA	NA	NA	7480	NM_023248	66711	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	Shwachman-Bodian-Diamond syndrome homolog (human)	protein-coding	0.015000	0.487562	
mm_38102.1	chr4	134372445	134372645	-	1	NA	NA	NA	2	NM_019578	56219	Mm.30978	NM_019578	ENSMUSG00000028838	Extl1	D430033M16Rik	exostoses (multiple)-like 1	protein-coding	0.025000	0.616915	
mm_3710.1	chr1	153907837	153908037	+	1	NA	NA	NA	8008	NM_008131	14645	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.060000	0.567164	
mm_155839.1	chrX	100798323	100798523	+	1	NA	NA	NA	21152	NM_001177780	53310	Mm.4615	NM_016747	ENSMUSG00000000881	Dlg3	Dlgh3|SAP102|mKIAA1232	discs, large homolog 3 (Drosophila)	protein-coding	0.015000	0.542289	
mm_87424.1	chr10	50777115	50777315	+	1	NA	NA	NA	-118436	NM_011376	20464	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded homolog 1 (Drosophila)	protein-coding	0.000000	0.253731	
mm_25775.1	chr3	126596734	126596934	+	1	NA	NA	NA	-117	NM_001293663	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.095000	0.671642	
mm_41008.1	chr5	81020654	81020854	+	1	NA	NA	NA	183	NM_001347369	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.060000	0.597015	
mm_167099.1	chr7	110164804	110165004	-	1	NA	NA	NA	42845	NM_009516	22390	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.065000	0.606965	
mm_94354.1	chr11	4941179	4941379	+	1	NA	NA	NA	-6242	NM_001243043	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.030000	0.472637	
mm_104085.1	chr11	86602267	86602467	-	1	NA	NA	NA	-18209	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.432836	
mm_26220.1	chr3	138860398	138860598	+	1	NA	NA	NA	118290	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.045000	0.557214	
mm_9089.1	chr1	168432227	168432427	-	1	NA	NA	NA	-158	NM_008783	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.020000	0.671642	
mm_123966.1	chr14	74947774	74947974	-	1	NA	NA	NA	3	NM_001252132	380916	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.110000	0.711443	
mm_164338.1	chr16	11456518	11456718	+	1	NA	NA	NA	50970	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.010000	0.497512	-31(GCTTATAAAGCA,+,0.00)
mm_85248.1	chr9	99139973	99140173	-	1	NA	NA	NA	138	NM_029094	74769	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol 3-kinase, catalytic, beta polypeptide	protein-coding	0.145000	0.781095	
mm_154171.1	chr19	58729985	58730185	-	1	NA	NA	NA	1198	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.005000	0.502488	
mm_116027.1	chr13	25269090	25269290	-	1	NA	NA	NA	806	NM_009513	22360	Mm.4766	NM_009513	ENSMUSG00000048978	Nrsn1	Neurensin-1|Neuro-p24|Vmp	neurensin 1	protein-coding	0.005000	0.502488	
mm_104682.1	chr11	97700238	97700438	-	1	NA	NA	NA	159	NM_009545	22658	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	0.130000	0.676617	
mm_118872.1	chr14	25857465	25857665	+	1	NA	NA	NA	15410	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.015000	0.542289	
mm_149526.1	chr19	12460691	12460891	+	1	NA	NA	NA	12	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.010000	0.422886	
mm_108938.1	chr12	101975912	101976112	+	1	NA	NA	NA	38	NM_016856	51786	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.100000	0.701493	
mm_10990.1	chr2	26315363	26315563	+	1	NA	NA	NA	-70	NM_001199146	67839	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	0.100000	0.736318	
mm_58716.1	chr7	13014651	13014851	+	1	NA	NA	NA	-4951	NM_001024699	232879	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	0.005000	0.348259	
mm_85742.1	chr9	108567224	108567424	-	1	NA	NA	NA	18	NM_023247	66706	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	0.065000	0.636816	
mm_29631.1	chr3	121615982	121616182	-	1	NA	NA	NA	27403	NR_036456	100503044	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.010000	0.517413	
mm_98293.1	chr11	89073828	89074028	+	1	NA	NA	NA	87	NM_001033266	217071	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	0.025000	0.557214	-36(GCTTTTAAGTAG,+,0.00)
mm_49851.1	chr6	38381406	38381606	+	1	NA	NA	NA	-18	NM_153600	264134	Mm.253446	NM_153600	ENSMUSG00000056832	Ttc26	9330141E21Rik|9430097H08Rik|hop|hpy	tetratricopeptide repeat domain 26	protein-coding	0.070000	0.592040	
mm_56771.1	chr6	116461030	116461230	-	1	NA	NA	NA	48	NM_009662	11689	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0.065000	0.701493	
mm_139669.1	chr17	57411943	57412143	+	1	NA	NA	NA	53357	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.353234	
mm_26022.1	chr3	135438464	135438664	+	1	NA	NA	NA	101	NR_030689	319587	Mm.358971	NR_030689	ENSMUSG00000097032	4930539J05Rik	8030475D13Rik	RIKEN cDNA 4930539J05 gene	ncRNA	0.115000	0.701493	
mm_157527.1	chrX	51017832	51018032	-	1	NA	NA	NA	86	NM_172413	72065	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	0.050000	0.597015	
mm_44974.1	chr5	36821775	36821975	-	1	NA	NA	NA	8774	NM_008550	17160	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0.050000	0.616915	
mm_168271.1	chr10	96077775	96077975	-	1	NA	NA	NA	137212	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.005000	0.358209	31(CCTTTAATAGTG,+,0.00),74(AGGCCTAAAAGC,-,0.00)
mm_34690.1	chr4	152008811	152009011	+	1	NA	NA	NA	20	NM_001033352	242785	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	0.110000	0.681592	-28(GTATTTATAGAG,+,0.00)
mm_56035.1	chr6	86649856	86650056	-	1	NA	NA	NA	19203	NM_010751	17119	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.010000	0.393035	
mm_119987.1	chr14	55578392	55578592	+	1	NA	NA	NA	-2	NM_011189	19186	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0.065000	0.681592	
mm_130360.1	chr15	97767806	97768006	-	1	NA	NA	NA	-240	NM_001177811	223864	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.050000	0.616915	
mm_108175.1	chr12	76406009	76406209	+	1	NA	NA	NA	1739	NM_008301	15512	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0.080000	0.517413	
mm_161637.1	chr16	93729967	93730167	+	1	NA	NA	NA	18160	NM_027293	70028	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0.055000	0.572139	
mm_130080.1	chr15	89374014	89374214	-	1	NA	NA	NA	-296	NM_001111288	100126824	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	0.105000	0.671642	
mm_43844.1	chr5	143180908	143181108	+	1	NA	NA	NA	-9	NM_177880	330228	Mm.255752	NM_177880	ENSMUSG00000029586	Spdye4b	4933411G11Rik	speedy/RINGO cell cycle regulator family, member E4B	protein-coding	0.020000	0.527363	
mm_107146.1	chr12	21543200	21543400	+	1	NA	NA	NA	-125864	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.070000	0.606965	
mm_106969.1	chr12	8938358	8938558	+	1	NA	NA	NA	-9471	NM_010770	17182	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0.010000	0.398010	
mm_140645.1	chr17	12682718	12682918	-	1	NA	NA	NA	-6980	NM_009202	20517	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.025000	0.442786	-7(TTTTTTAAGGGG,+,0.00)
mm_38855.1	chr4	149408375	149408575	-	1	NA	NA	NA	18156	NM_022022	63958	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0.020000	0.512438	
mm_24490.1	chr3	92352043	92352243	+	1	NA	NA	NA	0	NM_011471	20759	Mm.261596	NM_011471	ENSMUSG00000055030	Sprr2e	-	small proline-rich protein 2E	protein-coding	0.005000	0.467662	
mm_105945.1	chr11	115276830	115277030	-	1	NA	NA	NA	39	NM_007997	14149	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	-	ferredoxin reductase	protein-coding	0.075000	0.661692	
mm_18194.1	chr2	45116881	45117081	-	1	NA	NA	NA	-3702	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.035000	0.507463	
mm_33967.1	chr4	137594216	137594416	+	1	NA	NA	NA	127	NM_130879	170707	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	0.130000	0.741294	
mm_139467.1	chr17	55959675	55959875	+	1	NA	NA	NA	-374	NR_108021	100504333	Mm.391908	NR_108021	ENSMUSG00000097077	Gm16712	-	predicted gene, 16712	ncRNA	0.005000	0.383085	64(CACTTTTTAAAG,-,0.00),66(CTTTTTAAAGGA,+,0.00)
mm_135702.1	chr16	52453075	52453275	-	1	NA	NA	NA	-94	NM_001331110	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.085000	0.706468	
mm_114273.1	chr13	58157566	58157766	+	1	NA	NA	NA	17	NM_198004	75731	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	0.080000	0.696517	
mm_154755.1	chrX	10717371	10717571	+	1	NA	NA	NA	106	NM_001166635	68041	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	0.065000	0.646766	
mm_69899.1	chr7	141638701	141638901	-	1	NA	NA	NA	16518	NM_001330001	353328	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0.015000	0.542289	
mm_142039.1	chr17	35263986	35264186	-	1	NA	NA	NA	963	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.065000	0.651741	
mm_20433.1	chr2	129306445	129306645	-	1	NA	NA	NA	3427	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.025000	0.462687	
mm_73640.1	chr8	110740964	110741164	+	1	NA	NA	NA	15338	NM_001310591	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.020000	0.442786	
mm_505.1	chr1	37153749	37153949	+	1	NA	NA	NA	-64429	NM_001282010	12790	Mm.214224	NM_009918	ENSMUSG00000026114	Cnga3	CNG3	cyclic nucleotide gated channel alpha 3	protein-coding	0.015000	0.482587	
mm_112450.1	chr13	5862510	5862710	+	1	NA	NA	NA	1121	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.015000	0.422886	
mm_118674.1	chr14	22031869	22032069	+	1	NA	NA	NA	12257	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.000000	0.338308	
mm_18355.1	chr2	58195383	58195583	-	1	NA	NA	NA	31509	NR_045895	100042926	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	OTTMUSG00000012675	predicted gene 13546	ncRNA	0.010000	0.512438	
mm_71325.1	chr8	44950562	44950762	+	1	NA	NA	NA	454	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.060000	0.557214	
mm_36668.1	chr4	95487290	95487490	-	1	NA	NA	NA	-70117	NM_001113412	75578	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.020000	0.542289	
mm_68939.1	chr7	126502300	126502500	-	1	NA	NA	NA	25	NM_001347658	233871	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.095000	0.681592	
mm_54386.1	chr6	31218331	31218531	-	1	NA	NA	NA	43	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.040000	0.537313	
mm_168572.1	chr11	70982928	70983128	-	1	NA	NA	NA	-2	NM_007573	12261	Mm.30049	NM_007573	ENSMUSG00000018446	C1qbp	AA407365|AA986492|D11Wsu182e|HABP1|P32|gC1qBP	complement component 1, q subcomponent binding protein	protein-coding	0.115000	0.721393	
mm_169211.1	chr13	66563695	66563895	-	1	NA	NA	NA	-122677	NM_001290196	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.010000	0.537313	
mm_150631.1	chr19	41382889	41383089	+	1	NA	NA	NA	2081	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.005000	0.457711	
mm_25228.1	chr3	103860201	103860401	+	1	NA	NA	NA	24	NM_008979	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.010000	0.507463	
mm_141012.1	chr17	25015613	25015813	-	1	NA	NA	NA	-373	NM_134126	106633	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	0.130000	0.711443	
mm_103624.1	chr11	78697187	78697387	-	1	NA	NA	NA	138	NM_008702	18099	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0.105000	0.751244	
mm_128068.1	chr15	26895858	26896058	-	1	NA	NA	NA	-394	NM_176959	448987	Mm.253378	NM_176959	ENSMUSG00000043556	Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding	0.030000	0.537313	
mm_125482.1	chr15	54600764	54600964	+	1	NA	NA	NA	29498	NM_178920	105853	Mm.410994	NM_178920	ENSMUSG00000024479	Mal2	AI461653	mal, T cell differentiation protein 2	protein-coding	0.005000	0.368159	
mm_114118.1	chr13	55105170	55105370	+	1	NA	NA	NA	-39	NM_012017	26919	Mm.22795	NM_012017	ENSMUSG00000021481	Zfp346	Jaz|Znf346	zinc finger protein 346	protein-coding	0.090000	0.691542	
mm_110690.1	chr12	69183961	69184161	-	1	NA	NA	NA	6	NM_025589	66483	Mm.379115	NM_025589	ENSMUSG00000049751	Rpl36al	2410038A03Rik|RPL36A	ribosomal protein L36A-like	protein-coding	0.130000	0.666667	
mm_112402.1	chr13	3538350	3538550	+	1	NA	NA	NA	375	NM_008112	14569	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0.135000	0.746269	
mm_91133.1	chr10	19609108	19609308	-	1	NA	NA	NA	-12820	NM_178258	237310	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	0.025000	0.472637	
mm_126614.1	chr15	83100106	83100306	+	1	NA	NA	NA	1	NM_023475	68607	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	0.080000	0.671642	
mm_103622.1	chr11	78696114	78696314	-	1	NA	NA	NA	1211	NM_008702	18099	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0.015000	0.512438	
mm_76890.1	chr8	105698727	105698927	-	1	NA	NA	NA	2268	NM_001012638	497652	Mm.12964	NM_001012638	ENSMUSG00000038000	Acd	-	adrenocortical dysplasia	protein-coding	0.010000	0.582090	
mm_51502.1	chr6	83115435	83115635	+	1	NA	NA	NA	29	NM_020619	57377	Mm.28188	NM_020619	ENSMUSG00000030036	Mogs	1810017N02Rik|AI181835|Gcs1	mannosyl-oligosaccharide glucosidase	protein-coding	0.160000	0.781095	
mm_147664.1	chr18	60613324	60613524	-	1	NA	NA	NA	-3320	NM_001109975	104027	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	0.025000	0.601990	
mm_76545.1	chr8	88118507	88118707	-	1	NA	NA	NA	-152	NM_029074	382030	Mm.216574	NM_029074	ENSMUSG00000036810	Cnep1r1	5033428A16Rik|NEP1-R1|Tmem188	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding	0.045000	0.497512	
mm_4790.1	chr1	184478167	184478367	+	1	NA	NA	NA	79424	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.020000	0.497512	
mm_147171.1	chr18	36726620	36726820	-	1	NA	NA	NA	95	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.020000	0.452736	
mm_60778.1	chr7	45562941	45563141	+	1	NA	NA	NA	-7112	NM_009737	12036	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.015000	0.557214	
mm_86657.1	chr10	17724589	17724789	+	1	NA	NA	NA	1461	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.045000	0.497512	
mm_19704.1	chr2	103779284	103779484	-	1	NA	NA	NA	17694	NM_001111290	53872	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	0.010000	0.417910	
mm_152959.1	chr19	29356340	29356540	-	1	NA	NA	NA	5431	NM_026362	67759	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0.030000	0.497512	
mm_140807.1	chr17	22225528	22225728	-	1	NA	NA	NA	-14	NM_001205095	240038	Mm.227945	NM_001205095	ENSMUSG00000096433	Zfp994	EG240038|Gm4944	zinc finger protein 994	protein-coding	0.060000	0.601990	
mm_154638.1	chrX	7764182	7764382	+	1	NA	NA	NA	241	NM_001271491	209446	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	0.025000	0.517413	
mm_167575.1	chr9	44498168	44498368	+	1	NA	NA	NA	-868	NM_030256	80288	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.020000	0.567164	
mm_67652.1	chr7	84689772	84689972	-	1	NA	NA	NA	232	NR_038175	72495	Mm.382914	NR_038175	ENSMUSG00000085236	2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA	0.135000	0.706468	
mm_10727.1	chr2	22874746	22874946	+	1	NA	NA	NA	-20676	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.020000	0.532338	
mm_131541.1	chr16	17797123	17797323	+	1	NA	NA	NA	-59	NM_153790	224024	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0.130000	0.781095	
mm_147817.1	chr18	61737258	61737458	-	1	NA	NA	NA	10968	NR_029432	68982	Mm.441992	NR_029432	ENSMUSG00000098702	1500015A07Rik	-	RIKEN cDNA 1500015A07 gene	ncRNA	0.045000	0.527363	
mm_99894.1	chr11	109616038	109616238	+	1	NA	NA	NA	-4749	NM_145940	52639	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0.015000	0.447761	
mm_86118.1	chr9	116040982	116041182	-	1	NA	NA	NA	131627	NM_028638	73748	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	0.060000	0.497512	
mm_27398.1	chr3	51222269	51222469	-	1	NA	NA	NA	-2078	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.020000	0.552239	
mm_81827.1	chr9	118052354	118052554	+	1	NA	NA	NA	11932	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.005000	0.432836	
mm_17550.1	chr2	30093439	30093639	-	1	NA	NA	NA	96	NM_025428	66220	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	0.090000	0.681592	
mm_13202.1	chr2	93459777	93459977	+	1	NA	NA	NA	1974	NM_001271461	12521	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.005000	0.557214	74(CCCTTTTTAGGC,-,0.00),76(CTTTTTAGGCAC,+,0.00)
mm_78154.1	chr9	21025372	21025572	+	1	NA	NA	NA	-3901	NM_023892	78369	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.035000	0.567164	
mm_38822.1	chr4	148744135	148744335	-	1	NA	NA	NA	-60157	NM_001159344	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.025000	0.631841	
mm_137316.1	chr17	24886627	24886827	+	1	NA	NA	NA	53	NM_001163751	79043	Mm.274794	NM_027141	ENSMUSG00000024160	Spsb3	2310012N15Rik|3300001M01Rik|SSB3|Tce1|mKIAA4204	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding	0.130000	0.741294	
mm_168426.1	chr11	33537953	33538153	+	1	NA	NA	NA	-24307	NM_023146	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.000000	0.393035	
mm_79737.1	chr9	62345262	62345462	+	1	NA	NA	NA	4019	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.015000	0.507463	
mm_129567.1	chr15	79620671	79620871	-	1	NA	NA	NA	-15662	NM_010059	13404	Mm.2524	NM_010059	ENSMUSG00000022429	Dmc1	Dmc1h|Lim15|Mei11|sgdp	DNA meiotic recombinase 1	protein-coding	0.045000	0.512438	
mm_97697.1	chr11	80171386	80171586	+	1	NA	NA	NA	-12386	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.005000	0.502488	
mm_121645.1	chr14	8800418	8800618	-	1	NA	NA	NA	134128	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	0.050000	0.497512	
mm_32169.1	chr4	100336760	100336960	+	1	NA	NA	NA	-142007	NM_001033773	381534	Mm.318133	NM_001033773	ENSMUSG00000069733	Ube2u	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding	0.010000	0.368159	
mm_55511.1	chr6	69963789	69963989	-	1	NA	NA	NA	-636715	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.398010	-35(TATTATAAAAGG,-,0.00)
mm_16998.1	chr2	18392564	18392764	-	1	NA	NA	NA	166	NM_001190817	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.130000	0.751244	
mm_894.1	chr1	53297010	53297210	+	1	NA	NA	NA	15	NM_145517	227102	Mm.212846	NM_145517	ENSMUSG00000026097	Ormdl1	C730042F17Rik	ORM1-like 1 (S. cerevisiae)	protein-coding	0.065000	0.646766	
mm_37675.1	chr4	129121958	129122158	-	1	NA	NA	NA	-133	NM_001286081	15444	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	0.030000	0.616915	55(GCCTCTAAGAGC,-,0.00)
mm_25115.1	chr3	101634673	101634873	+	1	NA	NA	NA	-30066	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.025000	0.527363	79(GGCTATTAATGG,-,0.00)
mm_41125.1	chr5	87786493	87786693	+	1	NA	NA	NA	12143	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.000000	0.378109	
mm_109858.1	chr12	4829360	4829560	-	1	NA	NA	NA	11852	NM_025323	66055	Mm.102627	NM_025323	ENSMUSG00000037361	Sf3b6	0610009D07Rik|6030419K15Rik|AV001342|Sf3b14	splicing factor 3B, subunit 6	protein-coding	0.010000	0.432836	
mm_126571.1	chr15	82256014	82256214	+	1	NA	NA	NA	91	NR_037698	76505	Mm.23023	NR_037697	ENSMUSG00000068099	1500009C09Rik	-	RIKEN cDNA 1500009C09 gene	ncRNA	0.005000	0.557214	
mm_27906.1	chr3	79511533	79511733	-	1	NA	NA	NA	56046	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.010000	0.512438	
mm_3709.1	chr1	153904523	153904723	+	1	NA	NA	NA	4694	NM_008131	14645	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.020000	0.502488	
mm_14283.1	chr2	128801768	128801968	+	1	NA	NA	NA	-16435	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.000000	0.432836	7(TCTTTAAGAGCA,+,0.00)
mm_91274.1	chr10	24595703	24595903	-	1	NA	NA	NA	361	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.080000	0.671642	
mm_76212.1	chr8	83442519	83442719	-	1	NA	NA	NA	43	NM_001285992	56367	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	0.080000	0.601990	
mm_150839.1	chr19	44931063	44931263	+	1	NA	NA	NA	44	NM_001081225	226151	Mm.212609	NM_172638	ENSMUSG00000036097	Fam178a	3632432H19|6030443O07Rik|AU014917|Slf2	family with sequence similarity 178, member A	protein-coding	0.070000	0.646766	
mm_79220.1	chr9	49505170	49505370	+	1	NA	NA	NA	-13018	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.010000	0.437811	-8(TGTTTTTAAAGG,-,0.00),-7(GTTTTTAAAGGC,+,0.00)
mm_131342.1	chr16	13447617	13447817	+	1	NA	NA	NA	-1806	NR_030549	100124432		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0.055000	0.641791	
mm_49304.1	chr6	17749470	17749670	+	1	NA	NA	NA	400	NM_022332	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.005000	0.393035	-5(TTTTTTAAAGCA,+,0.00)
mm_110336.1	chr12	35686162	35686362	-	1	NA	NA	NA	42	NR_045051	71581	Mm.100110	NR_045050		9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	0.010000	0.373134	
mm_72459.1	chr8	83245754	83245954	+	1	NA	NA	NA	-44494	NM_009463	22227	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	0.005000	0.378109	
mm_48924.1	chr6	4505602	4505802	+	1	NA	NA	NA	84	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.045000	0.562189	
mm_102402.1	chr11	59120844	59121044	-	1	NA	NA	NA	15431	NM_001171512	380698	Mm.339542	NM_199152	ENSMUSG00000061462	Obscn	BC046431|Gm878|OTTMUSG00000005786|UNC89	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein-coding	0.005000	0.323383	
mm_48214.1	chr5	137610515	137610715	-	1	NA	NA	NA	789	NM_008788	18542	Mm.262345	NM_008788	ENSMUSG00000029718	Pcolce	Astt-2|Astt2|P14|PCPE-1	procollagen C-endopeptidase enhancer protein	protein-coding	0.035000	0.606965	
mm_78901.1	chr9	44720713	44720913	+	1	NA	NA	NA	14385	NM_153537	102693	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.020000	0.567164	
mm_82479.1	chr9	17556200	17556400	-	1	NA	NA	NA	-735967	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.005000	0.537313	
mm_87097.1	chr10	33083422	33083622	+	1	NA	NA	NA	39	NM_029726	76757	Mm.338508	NM_029726	ENSMUSG00000019787	Trdn	2310045H21Rik|EG432451|TDN	triadin	protein-coding	0.000000	0.422886	
mm_115391.1	chr13	113293115	113293315	+	1	NA	NA	NA	83556	NM_023612	71690	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.150000	0.781095	
mm_130844.1	chr15	101918485	101918685	-	1	NA	NA	NA	6150	NM_008475	16682	Mm.46425	NM_008475	ENSMUSG00000059668	Krt4	AW108092|K4|Krt-2.4|Krt2-4	keratin 4	protein-coding	0.010000	0.492537	
mm_77875.1	chr9	6168555	6168755	+	1	NA	NA	NA	43	NM_027924	71785	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0.050000	0.522388	
mm_161700.1	chr17	23941896	23942096	+	1	NA	NA	NA	0	NM_011321	20234	Mm.390958	NM_011321	ENSMUSG00000024128	Sbp	AV082137|AV082259|p25	spermine binding protein	protein-coding	0.005000	0.552239	-33(GGATATAAAGGG,-,0.00)
mm_104046.1	chr11	86357266	86357466	-	1	NA	NA	NA	159	NM_001080931	327987	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0.115000	0.786070	
mm_100937.1	chr11	6520832	6521032	-	1	NA	NA	NA	26	NM_178440	246177	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0.010000	0.582090	
mm_132883.1	chr16	48790204	48790404	+	1	NA	NA	NA	-18348	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.015000	0.507463	
mm_155413.1	chrX	73483591	73483791	+	1	NA	NA	NA	90	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.050000	0.646766	
mm_18329.1	chr2	57238228	57238428	-	1	NA	NA	NA	-54	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.130000	0.751244	
mm_12951.1	chr2	87845245	87845445	+	1	NA	NA	NA	-11832	NM_146638	258631	Mm.377602	NM_146638	ENSMUSG00000047039	Olfr1151	MOR177-9	olfactory receptor 1151	protein-coding	0.000000	0.298507	
mm_160264.1	chr7	110365948	110366148	-	1	NA	NA	NA	144345	NM_009302	20947	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.000000	0.253731	
mm_93415.1	chr10	108500434	108500634	-	1	NA	NA	NA	168345	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.020000	0.527363	
mm_133787.1	chr16	95257678	95257878	+	1	NA	NA	NA	220	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.015000	0.572139	
mm_69787.1	chr7	141096590	141096790	-	1	NA	NA	NA	3856	NM_023059	24058	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0.010000	0.517413	
mm_48459.1	chr5	140808425	140808625	-	1	NA	NA	NA	21906	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.005000	0.378109	
mm_64122.1	chr7	141131201	141131401	+	1	NA	NA	NA	15	NM_013782	27388	Mm.293591	NM_013782	ENSMUSG00000025495	Ptdss2	AI481134|AI988017|PSS2	phosphatidylserine synthase 2	protein-coding	0.115000	0.751244	
mm_141330.1	chr17	28485991	28486191	-	1	NA	NA	NA	58	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.180000	0.815920	
mm_90244.1	chr10	121488774	121488974	+	1	NA	NA	NA	-12624	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.020000	0.542289	
mm_157021.1	chrX	7763665	7763865	-	1	NA	NA	NA	-178	NM_001105197	209446	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	0.025000	0.527363	-72(TTCCATATAAGG,-,0.00)
mm_35991.1	chr4	55532052	55532252	-	1	NA	NA	NA	323	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.075000	0.577114	
mm_22216.1	chr2	174327255	174327455	-	1	NA	NA	NA	-413	NM_001310083	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.095000	0.616915	
mm_7183.1	chr1	92726308	92726508	-	1	NA	NA	NA	-77567	NM_153114	260301	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.015000	0.477612	
mm_93960.1	chr10	127286328	127286528	-	1	NA	NA	NA	2590	NM_001347171	110962	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.025000	0.646766	
mm_168875.1	chr12	40883956	40884156	-	1	NA	NA	NA	-140034	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.035000	0.487562	
mm_111516.1	chr12	99642619	99642819	-	1	NA	NA	NA	-14745	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.015000	0.522388	
mm_170088.1	chr17	35689723	35689923	-	1	NA	NA	NA	10767	NM_001198833	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.040000	0.651741	-33(CGGTTTAAAAGG,-,0.00)
mm_89156.1	chr10	86032941	86033141	+	1	NA	NA	NA	10887	NM_001347151	69754	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	0.005000	0.412935	-13(GTCTTTAAAAGG,-,0.00),-12(TCTTTAAAAGGT,+,0.00)
mm_19396.1	chr2	91630469	91630669	-	1	NA	NA	NA	5888	NM_010168	14061	Mm.89048	NM_010168	ENSMUSG00000027249	F2	Cf-2|Cf2|FII	coagulation factor II	protein-coding	0.045000	0.572139	
mm_40470.1	chr5	53809558	53809758	+	1	NA	NA	NA	31	NM_144517	67249	Mm.28823	NM_144517	ENSMUSG00000039178	Tbc1d19	2810453K03Rik	TBC1 domain family, member 19	protein-coding	0.095000	0.676617	
mm_26533.1	chr3	146117610	146117810	+	1	NA	NA	NA	-4081	NM_134160	171166	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	0.060000	0.661692	
mm_35156.1	chr4	12171689	12171889	-	1	NA	NA	NA	226	NM_001310743	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.165000	0.751244	
mm_4485.1	chr1	173630796	173630996	+	1	NA	NA	NA	37	NM_175026	236312	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	0.005000	0.442786	
mm_108115.1	chr12	75591260	75591460	+	1	NA	NA	NA	4840	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.020000	0.582090	
mm_45680.1	chr5	77349390	77349590	-	1	NA	NA	NA	39006	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.010000	0.407960	
mm_128345.1	chr15	39784700	39784900	-	1	NA	NA	NA	-12245	NR_045788	100503072	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	OTTMUSG00000033244	predicted gene 16291	ncRNA	0.020000	0.492537	
mm_157989.1	chrX	94366757	94366957	-	1	NA	NA	NA	-253	NM_026673	68316	Mm.379156	NM_026673	ENSMUSG00000079508	Apoo	0610008C08Rik|1110019O03Rik	apolipoprotein O	protein-coding	0.085000	0.666667	
mm_37972.1	chr4	133536677	133536877	-	1	NA	NA	NA	9250	NM_010948	18221	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nudC nuclear distribution protein	protein-coding	0.015000	0.532338	
mm_146085.1	chr18	73551570	73551770	+	1	NA	NA	NA	-21035	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.020000	0.492537	
mm_165702.1	chr3	95549994	95550194	+	1	NA	NA	NA	-9583	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.010000	0.432836	
mm_4007.1	chr1	164823741	164823941	+	1	NA	NA	NA	27109	NM_019759	56429	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	0.005000	0.452736	
mm_88725.1	chr10	80179348	80179548	+	1	NA	NA	NA	-34	NM_007909	13637	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0.125000	0.786070	
mm_100716.1	chr11	3863803	3864003	-	1	NA	NA	NA	0	NM_152818	74309	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	0.120000	0.771144	
mm_127784.1	chr15	3542346	3542546	-	1	NA	NA	NA	39396	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.000000	0.328358	
mm_164037.1	chr14	84445181	84445381	+	1	NA	NA	NA	1718	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0.040000	0.527363	
mm_49978.1	chr6	40891315	40891515	+	1	NA	NA	NA	-3921	NM_139296	194357	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0.005000	0.507463	24(CCTTTAAGACAG,+,0.00)
mm_54681.1	chr6	39419724	39419924	-	1	NA	NA	NA	-48	NM_001311109	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.150000	0.751244	
mm_95349.1	chr11	48802181	48802381	+	1	NA	NA	NA	248	NR_028563	100216534		NR_028563	ENSMUSG00000064725	Snord96a	U96	small nucleolar RNA, C/D box 96A	snoRNA	0.030000	0.527363	
mm_139646.1	chr17	57386518	57386718	+	1	NA	NA	NA	27932	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.313433	
mm_69439.1	chr7	132910883	132911083	-	1	NA	NA	NA	-38639	NM_207302	360216	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0.010000	0.398010	
mm_9415.1	chr1	172313913	172314113	-	1	NA	NA	NA	1646	NM_080419	140559	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	0.000000	0.542289	
mm_126900.1	chr15	89532743	89532943	+	1	NA	NA	NA	32986	NM_021423	58234	Mm.146855	NM_021423	ENSMUSG00000022623	Shank3	AI841104|SHANK3c-3|SHANK3c-4|Shank3b	SH3/ankyrin domain gene 3	protein-coding	0.080000	0.666667	36(GGGCCTAAGAGG,-,0.00)
mm_31442.1	chr4	48585061	48585261	+	1	NA	NA	NA	-32	NM_021436	230157	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0.175000	0.800995	
mm_149174.1	chr19	9102424	9102624	+	1	NA	NA	NA	-14568	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.005000	0.442786	
mm_60198.1	chr7	43409168	43409368	+	1	NA	NA	NA	988	NM_172900	243958	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0.010000	0.532338	
mm_153930.1	chr19	47416055	47416255	-	1	NA	NA	NA	48256	NM_001164717	14218	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.030000	0.572139	
mm_63543.1	chr7	128062596	128062796	+	1	NA	NA	NA	56	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.010000	0.487562	49(GACTCTTAAAGC,-,0.00)
mm_101211.1	chr11	20064149	20064349	-	1	NA	NA	NA	48702	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.010000	0.482587	
mm_96376.1	chr11	67240481	67240681	+	1	NA	NA	NA	2769	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.035000	0.527363	
mm_95130.1	chr11	34299646	34299846	+	1	NA	NA	NA	-15076	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.005000	0.507463	
mm_47844.1	chr5	134314600	134314800	-	1	NA	NA	NA	60	NM_001080746	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.070000	0.552239	
mm_149667.1	chr19	18758526	18758726	+	1	NA	NA	NA	8643	NM_153417	225997	Mm.215171	NM_153417	ENSMUSG00000024727	Trpm6	CHAK2|TRPM6/CHAK2	transient receptor potential cation channel, subfamily M, member 6	protein-coding	0.025000	0.587065	
mm_92876.1	chr10	82492519	82492719	-	1	NA	NA	NA	-1	NM_001255990	432480	Mm.280394	NM_001255990	ENSMUSG00000094186	Gm1553	Lcrn	predicted gene 1553	protein-coding	0.010000	0.378109	
mm_162099.1	chrX	37661595	37661795	-	1	NA	NA	NA	7069	NM_001114157	434758	Mm.357753	NM_001114157	ENSMUSG00000071769	Rhox3h	EG434758|Rhox3.8|Rhox3g	reproductive homeobox 3H	protein-coding	0.030000	0.477612	
mm_25419.1	chr3	107753691	107753891	+	1	NA	NA	NA	6678	NM_001113530	12977	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0.015000	0.497512	34(GTCTTTAAAGCG,+,0.00),35(TCTTTAAAGCGC,+,0.00)
mm_121637.1	chr14	8378639	8378839	-	1	NA	NA	NA	24	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.005000	0.601990	82(GGCCAGAAAAGC,-,0.00)
mm_125978.1	chr15	76327360	76327560	+	1	NA	NA	NA	63	NM_175399	109075	Mm.322752	NM_175399	ENSMUSG00000034259	Exosc4	1110039I09Rik|1500001N04Rik|Rrp41	exosome component 4	protein-coding	0.100000	0.601990	
mm_130583.1	chr15	99535815	99536015	-	1	NA	NA	NA	-7750	NM_001038658	72393	Mm.39760	NM_028224	ENSMUSG00000023011	Faim2	2900002L20Rik|Lfg|Lfg2|NMP25|Nmp35|Tmbim2	Fas apoptotic inhibitory molecule 2	protein-coding	0.000000	0.462687	
mm_160667.1	chr9	121791247	121791447	-	1	NA	NA	NA	-227	NR_027967	74770	Mm.44195	NM_029095	ENSMUSG00000032523	Hhatl	1110011D13Rik|Gup1|Mg56	hedgehog acyltransferase-like	protein-coding	0.000000	0.597015	9(CCTCAAAGAGCC,+,0.00)
mm_5484.1	chr1	36891498	36891698	-	1	NA	NA	NA	47929	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.015000	0.462687	
mm_69796.1	chr7	141168562	141168762	-	1	NA	NA	NA	24	NM_001172101	107702	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.070000	0.606965	
mm_173101.1	chrX	152909537	152909737	-	1	NA	NA	NA	-96832	NM_001137547	635253	Mm.426169	NM_001137547	ENSMUSG00000067215	Usp51	AV136873	ubiquitin specific protease 51	protein-coding	0.015000	0.432836	
mm_78316.1	chr9	23799051	23799251	+	1	NA	NA	NA	-298867	NM_175678	319239	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	0.000000	0.298507	-93(CTGTTTAAAAAG,-,0.00)
mm_94429.1	chr11	6291881	6292081	+	1	NA	NA	NA	384	NM_001252283	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.125000	0.726368	
mm_168616.1	chr11	77293760	77293960	+	1	NA	NA	NA	-54420	NM_001291190	237860	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot homolog 2 (Drosophila)	protein-coding	0.020000	0.482587	
mm_138583.1	chr17	35471564	35471764	+	1	NA	NA	NA	1575	NM_010391	15007	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	0.015000	0.368159	
mm_14994.1	chr2	152333775	152333975	+	1	NA	NA	NA	-1236	NM_019705	24105	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0.005000	0.378109	12(TCCCTTTAAAGG,-,0.00),13(CCCTTTAAAGGG,+,0.00),13(CCCTTTAAAGGG,-,0.00),14(CCTTTAAAGGGC,+,0.00)
mm_66213.1	chr7	34360523	34360723	-	1	NA	NA	NA	28917	NM_025948	67070	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral	LSM14A mRNA processing body assembly factor	protein-coding	0.000000	0.288557	
mm_83653.1	chr9	49508533	49508733	-	1	NA	NA	NA	-9655	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.045000	0.537313	
mm_5041.1	chr1	193655552	193655752	+	1	NA	NA	NA	-148122	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.030000	0.522388	
mm_64802.1	chr7	6691069	6691269	-	1	NA	NA	NA	5263	NM_011769	22776	Mm.89976	NM_011769	ENSMUSG00000002266	Zim1	-	zinc finger, imprinted 1	protein-coding	0.000000	0.482587	
mm_147116.1	chr18	35739930	35740130	-	1	NA	NA	NA	524	NM_001289592	72512	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0.015000	0.502488	
mm_43244.1	chr5	130079385	130079585	+	1	NA	NA	NA	115	NM_001130476	22021	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0.170000	0.791045	
mm_114188.1	chr13	55714609	55714809	+	1	NA	NA	NA	59	NM_175150	69672	Mm.294457	NM_175150	ENSMUSG00000021497	Txndc15	2310047H23Rik|AI854086|C5orf14|UNQ335	thioredoxin domain containing 15	protein-coding	0.115000	0.706468	
mm_78349.1	chr9	25307696	25307896	+	1	NA	NA	NA	55357	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.005000	0.278607	
mm_35406.1	chr4	34756098	34756298	-	1	NA	NA	NA	61	NM_001033255	214568	Mm.297405	NM_001033255	ENSMUSG00000071015	Gm136	-	predicted gene 136	protein-coding	0.005000	0.457711	
mm_158072.1	chrX	101264645	101264845	-	1	NA	NA	NA	-753	NM_001317221	245536	Mm.212463	NM_001033362	ENSMUSG00000090141	Gm614	-	predicted gene 614	protein-coding	0.010000	0.502488	
mm_107221.1	chr12	26470255	26470455	+	1	NA	NA	NA	1140	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.010000	0.462687	
mm_114907.1	chr13	94875534	94875734	+	1	NA	NA	NA	7	NM_011021	18420	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	0.035000	0.373134	-41(CTCTCTAAAGGA,-,0.00)
mm_12419.1	chr2	70562018	70562218	+	1	NA	NA	NA	-11	NM_001312900	14415	Mm.272120	NM_008077	ENSMUSG00000070880	Gad1	EP10|Gad-1	glutamate decarboxylase 1	protein-coding	0.100000	0.716418	
mm_94624.1	chr11	16778573	16778773	+	1	NA	NA	NA	26470	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.005000	0.388060	
mm_87465.1	chr10	51485657	51485857	+	1	NA	NA	NA	-5141	NM_001291894	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.015000	0.472637	
mm_108809.1	chr12	94055214	94055414	+	1	NA	NA	NA	127976	NR_106201	102466888		NR_106201	ENSMUSG00000098931	Mir8099-2	Gm27692|mmu-mir-8099-2	microRNA 8099-2	ncRNA	0.000000	0.457711	
mm_67078.1	chr7	68264511	68264711	-	1	NA	NA	NA	-378	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.025000	0.482587	
mm_70418.1	chr8	11461118	11461318	+	1	NA	NA	NA	-16711	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.010000	0.537313	
mm_33139.1	chr4	125085017	125085217	+	1	NA	NA	NA	-17	NM_027310	70088	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	0.170000	0.766169	
mm_137760.1	chr17	29489243	29489443	+	1	NA	NA	NA	-1702	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.025000	0.378109	-32(ATCTTTATAAGC,-,0.00),3(GCATTTAAACGC,+,0.00),50(CTCCTTTAAAGA,-,0.00),52(CCTTTAAAGATC,+,0.00)
mm_87454.1	chr10	51483583	51483783	+	1	NA	NA	NA	3071	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.000000	0.398010	-72(GCTTTAATATTC,+,0.00)
mm_106101.1	chr11	116262807	116263007	-	1	NA	NA	NA	11310	NM_146032	217337	Mm.29655	NM_146032	ENSMUSG00000020780	Srp68	2610024I03Rik	signal recognition particle 68	protein-coding	0.025000	0.512438	
mm_73343.1	chr8	105347996	105348196	+	1	NA	NA	NA	-126	NM_177699	234686	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0.085000	0.641791	
mm_111431.1	chr12	91779037	91779237	-	1	NA	NA	NA	7299	NM_175367	108800	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.125000	0.731343	
mm_35090.1	chr4	8237997	8238197	-	1	NA	NA	NA	944	NM_007592	12319	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	0.005000	0.412935	
mm_80648.1	chr9	89869762	89869962	+	1	NA	NA	NA	-39913	NM_011245	19417	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	0.005000	0.512438	
mm_82517.1	chr9	20640299	20640499	-	1	NA	NA	NA	2407	NM_013911	30843	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding	0.010000	0.447761	
mm_160497.1	chr9	7835192	7835392	-	1	NA	NA	NA	1514	NM_001291503	11797	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.015000	0.348259	
mm_55787.1	chr6	82688293	82688493	-	1	NA	NA	NA	-35528	NM_025882	66979	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	0.010000	0.502488	
mm_171820.1	chr5	139844829	139845029	+	1	NA	NA	NA	-18086	NM_025604	66506	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	0.035000	0.552239	
mm_37418.1	chr4	122864588	122864788	-	1	NA	NA	NA	21369	NM_007598	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.020000	0.552239	
mm_120602.1	chr14	70080056	70080256	+	1	NA	NA	NA	2361	NM_001289927	13655	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.060000	0.646766	
mm_168189.1	chr10	62602093	62602293	-	1	NA	NA	NA	105	NM_019553	56200	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0.070000	0.646766	
mm_134973.1	chr16	32019494	32019694	-	1	NA	NA	NA	-16307	NM_177103	320213	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	0.010000	0.388060	
mm_16103.1	chr2	169632775	169632975	+	1	NA	NA	NA	-771	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.025000	0.507463	
mm_23808.1	chr3	79885876	79886076	+	1	NA	NA	NA	46	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.020000	0.477612	47(GAGTTTAAAAGG,-,0.00)
mm_117445.1	chr13	74770489	74770689	-	1	NA	NA	NA	147	NM_001301156	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.055000	0.567164	
mm_136057.1	chr16	79090970	79091170	-	1	NA	NA	NA	27	NM_008941	19146	Mm.5184	NM_008941	ENSMUSG00000022857	Tmprss15	Entk|Prss7	transmembrane protease, serine 15	protein-coding	0.010000	0.378109	-62(TCCTTTTAAAGA,-,0.00),-61(CCTTTTAAAGAT,+,0.00)
mm_57402.1	chr6	124864058	124864258	-	1	NA	NA	NA	-241	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.040000	0.572139	
mm_84405.1	chr9	65555212	65555412	-	1	NA	NA	NA	24775	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.005000	0.482587	-16(ACCTTTAGAGGC,+,0.00)
mm_71740.1	chr8	62958875	62959075	+	1	NA	NA	NA	7630	NM_023689	72902	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding	0.005000	0.432836	
mm_125956.1	chr15	76249382	76249582	+	1	NA	NA	NA	1291	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.015000	0.587065	
mm_62431.1	chr7	101361873	101362073	+	1	NA	NA	NA	13904	NM_001040111	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.010000	0.587065	
mm_159187.1	chr2	113363558	113363758	+	1	NA	NA	NA	35922	NM_010230	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.015000	0.497512	
mm_105001.1	chr11	100371162	100371362	-	1	NA	NA	NA	-15121	NM_010404	15114	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.020000	0.567164	
mm_14342.1	chr2	129593042	129593242	+	1	NA	NA	NA	-27	NM_001291019	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.185000	0.835821	
mm_98892.1	chr11	97841221	97841421	+	1	NA	NA	NA	541	NM_001080935	68127	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0.040000	0.582090	
mm_75075.1	chr8	33853598	33853798	-	1	NA	NA	NA	76165	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.020000	0.522388	
mm_32212.1	chr4	101550288	101550488	+	1	NA	NA	NA	-206	NM_001164583	72685	Mm.76494	NM_198412	ENSMUSG00000028528	Dnajc6	2810027M23Rik|mKIAA0473	DnaJ heat shock protein family (Hsp40) member C6	protein-coding	0.075000	0.676617	
mm_102094.1	chr11	52284305	52284505	-	1	NA	NA	NA	-1391	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.065000	0.641791	
mm_36166.1	chr4	61673996	61674196	-	1	NA	NA	NA	-2	NM_001199333	100048884	Mm.335875	NM_001199333	ENSMUSG00000078674	Mup18	100039228|Gm12561|Mup16|Mup6|Mup9|OTTMUSG00000007486	major urinary protein 18	protein-coding	0.010000	0.417910	-29(GAGTATATAAGG,-,0.00)
mm_101814.1	chr11	46389361	46389561	-	1	NA	NA	NA	54	NM_001281968	16428	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	0.025000	0.487562	
mm_39170.1	chr4	155696910	155697110	-	1	NA	NA	NA	2668	NM_178699	230991	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	0.025000	0.547264	
mm_113795.1	chr13	46418125	46418325	+	1	NA	NA	NA	-75	NM_001081425	666794	Mm.38269	NM_001081425	ENSMUSG00000038132	Rbm24	6330546B05Rik|AI606861	RNA binding motif protein 24	protein-coding	0.065000	0.641791	
mm_47918.1	chr5	135001183	135001383	-	1	NA	NA	NA	67	NR_026907	71304	Mm.482317	NR_026907	ENSMUSG00000054909	Wbscr25	4933433J03Rik|4933439O14Rik	Williams Beuren syndrome chromosome region 25 (human)	ncRNA	0.015000	0.631841	
mm_10250.1	chr2	9189461	9189661	+	1	NA	NA	NA	46	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.010000	0.432836	
mm_87748.1	chr10	60267018	60267218	+	1	NA	NA	NA	-10510	NM_001146123	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.020000	0.497512	
mm_87452.1	chr10	51483494	51483694	+	1	NA	NA	NA	2982	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.000000	0.378109	-34(CTTTTTATATTC,+,0.00),17(GCTTTAATATTC,+,0.00)
mm_93692.1	chr10	117835232	117835432	-	1	NA	NA	NA	10642	NM_024457	215449	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.005000	0.298507	
mm_148018.1	chr18	68429166	68429366	-	1	NA	NA	NA	54	NM_001301372	17200	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	0.010000	0.402985	
mm_169502.1	chr14	78725622	78725822	-	1	NA	NA	NA	-633	NM_001081336	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.050000	0.582090	
mm_9233.1	chr1	171281033	171281233	-	1	NA	NA	NA	53	NM_008911	19044	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	0.055000	0.567164	-27(GACCCTAAAAGT,-,0.00)
mm_166747.1	chr6	125095923	125096123	+	1	NA	NA	NA	42	NM_001346610	107932	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	0.090000	0.706468	
mm_29425.1	chr3	109017665	109017865	-	1	NA	NA	NA	9842	NM_001163567	329739	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.005000	0.353234	-35(CCCTTTAAAAAG,+,0.00),-35(CCCTTTAAAAAG,-,0.00),-34(CCTTTAAAAAGA,+,0.00)
mm_13857.1	chr2	119705495	119705695	+	1	NA	NA	NA	30527	NM_030112	76246	Mm.33437	NM_030112	ENSMUSG00000027304	Rtf1	2900005O08Rik|6530416A09Rik|AI853581|AU043144|AW553985|Gtl7|cbp82	RTF1, Paf1/RNA polymerase II complex component	protein-coding	0.020000	0.467662	
mm_83838.1	chr9	54392649	54392849	-	1	NA	NA	NA	-91179	NR_045805	73567	Mm.211290	NM_001033169	ENSMUSG00000074343	Gldnos	1700104A03Rik	gliomedin, opposite strand	ncRNA	0.000000	0.333333	-8(TTTTTTAAACAC,+,0.00)
mm_132555.1	chr16	37884370	37884570	+	1	NA	NA	NA	16070	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.010000	0.422886	
mm_153757.1	chr19	45352715	45352915	-	1	NA	NA	NA	-10919	NM_001286466	12234	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.020000	0.502488	-34(TTCTATAAAAGT,-,0.00)
mm_18835.1	chr2	74753337	74753537	-	1	NA	NA	NA	753	NR_110447	102634401	Mm.235021	NR_110447	ENSMUSG00000085015	LOC102634401	-	uncharacterized LOC102634401	ncRNA	0.055000	0.611940	
mm_43061.1	chr5	124232914	124233114	+	1	NA	NA	NA	3289	NR_045369	75927	Mm.410803	NR_045369	ENSMUSG00000090220	Pitpnm2os1	4930568K20Rik	phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 1	ncRNA	0.020000	0.517413	
mm_116116.1	chr13	28950219	28950419	-	1	NA	NA	NA	3363	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.020000	0.348259	-92(CTCTTTAAAAGG,-,0.00),-91(TCTTTAAAAGGA,+,0.00)
mm_152872.1	chr19	24477369	24477569	-	1	NA	NA	NA	5	NM_026520	68034	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding	0.150000	0.766169	
mm_144700.1	chr18	34862847	34863047	+	1	NA	NA	NA	1740	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.020000	0.577114	83(CACTATTAAAGC,-,0.00)
mm_80403.1	chr9	77636493	77636693	+	1	NA	NA	NA	-139	NM_172925	244923	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0.010000	0.567164	
mm_76837.1	chr8	105281399	105281599	-	1	NA	NA	NA	5052	NM_030152	78688	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0.020000	0.587065	
mm_15542.1	chr2	158384928	158385128	+	1	NA	NA	NA	9390	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.010000	0.398010	60(CACTTTAAAAGA,-,0.00),61(ACTTTAAAAGAG,+,0.00)
mm_10910.1	chr2	25372242	25372442	+	1	NA	NA	NA	307	NM_001081085	72080	Mm.250293	NM_001081085	ENSMUSG00000026955	Sapcd2	2010317E24Rik|6030458L21Rik|AL033337|ang	suppressor APC domain containing 2	protein-coding	0.095000	0.611940	
mm_76661.1	chr8	93270251	93270451	-	1	NA	NA	NA	9385	NM_144930	234564	Mm.29110	NM_144930	ENSMUSG00000031725	Ces1f	AU018778|CesML1|TGH-2	carboxylesterase 1F	protein-coding	0.000000	0.383085	
mm_25875.1	chr3	130185123	130185323	+	1	NA	NA	NA	4378	NM_001244952	77018	Mm.91728	NM_029838	ENSMUSG00000058897	Col25a1	2700062B08Rik|CLAC-P	collagen, type XXV, alpha 1	protein-coding	0.005000	0.378109	
mm_67904.1	chr7	99695497	99695697	-	1	NA	NA	NA	212	NM_001252531	101488	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0.015000	0.512438	
mm_66432.1	chr7	44669220	44669420	-	1	NA	NA	NA	1523	NM_001271540	71960	Mm.158289	NM_028021	ENSMUSG00000030739	Myh14	2400004E04Rik|II-C|NHMCII|NMHC II-C	myosin, heavy polypeptide 14	protein-coding	0.070000	0.706468	
mm_146079.1	chr18	70607112	70607312	+	1	NA	NA	NA	38920	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.005000	0.393035	-2(GGCTTTAAATGT,-,0.00)
mm_161710.1	chr17	25025520	25025720	+	1	NA	NA	NA	9534	NM_134126	106633	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	0.020000	0.542289	
mm_89099.1	chr10	84549982	84550182	+	1	NA	NA	NA	3256	NR_040658	442847	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	0.040000	0.537313	
mm_151755.1	chr19	5099415	5099615	-	1	NA	NA	NA	-994	NM_009920	12794	Mm.299737	NM_009920	ENSMUSG00000024873	Cnih2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding	0.000000	0.562189	
mm_2902.1	chr1	131962894	131963094	+	1	NA	NA	NA	79	NM_001177628	212980	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.105000	0.726368	-33(AGATTTAAAAGG,-,0.00)
mm_162184.1	chrX	102908587	102908787	-	1	NA	NA	NA	0	NM_027591	70887	Mm.29672	NM_027591	ENSMUSG00000031323	Dmrtc1a	1700030H14Rik|4921520P21Rik|DMRTC1|Dmrt8.1	DMRT-like family C1a	protein-coding	0.035000	0.562189	
mm_52096.1	chr6	97850830	97851030	+	1	NA	NA	NA	43872	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.427861	
mm_169975.1	chr1	71494111	71494311	-	1	NA	NA	NA	-62945	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.045000	0.507463	
mm_143936.1	chr17	86230161	86230361	-	1	NA	NA	NA	56917	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.025000	0.552239	
mm_85889.1	chr9	111053846	111054046	-	1	NA	NA	NA	3298	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.010000	0.532338	
mm_80061.1	chr9	69397881	69398081	+	1	NA	NA	NA	-17	NM_145618	93697	Mm.35911	NM_145618	ENSMUSG00000032235	Ice2	B230343B06Rik|Narg2	interactor of little elongation complex ELL subunit 2	protein-coding	0.145000	0.691542	-31(GCTTTTAAATGA,+,0.00)
mm_159619.1	chr4	134287747	134287947	-	1	NA	NA	NA	-1	NM_146156	230809	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	0.075000	0.651741	-36(GCTTCTTTAAGG,-,0.00)
mm_6962.1	chr1	86111818	86112018	-	1	NA	NA	NA	52	NM_008311	15559	Mm.439747	NM_008311	ENSMUSG00000026228	Htr2b	5-HT2B|AJ012488|AV377389	5-hydroxytryptamine (serotonin) receptor 2B	protein-coding	0.020000	0.482587	
mm_133306.1	chr16	77598070	77598270	+	1	NA	NA	NA	-766	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.000000	0.318408	-18(GTTTATAAAAAG,-,0.00)
mm_70375.1	chr8	10006542	10006742	+	1	NA	NA	NA	9	NM_033622	24099	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	0.025000	0.512438	
mm_36625.1	chr4	91376223	91376423	-	1	NA	NA	NA	168	NM_001347149	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding	0.035000	0.432836	-54(CCTTTTAAGACG,+,0.00)
mm_153106.1	chr19	32757276	32757476	-	1	NA	NA	NA	-201	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.130000	0.761194	
mm_16172.1	chr2	172549493	172549693	+	1	NA	NA	NA	0	NM_009335	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding	0.110000	0.686567	
mm_66562.1	chr7	45239183	45239383	-	1	NA	NA	NA	-168	NM_001290804	12493	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0.025000	0.592040	
mm_21087.1	chr2	153090551	153090751	-	1	NA	NA	NA	-17817	NM_001172117	15162	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.010000	0.567164	
mm_111185.1	chr12	84148120	84148320	-	1	NA	NA	NA	269	NM_027438	70481	Mm.444348	NM_027438	ENSMUSG00000054383	Pnma1	5730402C15Rik	paraneoplastic antigen MA1	protein-coding	0.080000	0.671642	-3(CTCTCTTTAAGC,-,0.00)
mm_108464.1	chr12	83520463	83520663	+	1	NA	NA	NA	97	NM_030246	73828	Mm.38238	NM_030246	ENSMUSG00000021222	Dcaf4	1110018E21Rik|Wdr21	DDB1 and CUL4 associated factor 4	protein-coding	0.055000	0.572139	
mm_98221.1	chr11	88047710	88047910	+	1	NA	NA	NA	437	NM_173374	110809	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	0.120000	0.651741	
mm_173074.1	chrX	136215353	136215553	-	1	NA	NA	NA	60	NM_009052	19716	Mm.422943	NM_009052	ENSMUSG00000050071	Bex1	AA407839|AU018692|Bex4|Rex3	brain expressed X-linked 1	protein-coding	0.090000	0.706468	
mm_36195.1	chr4	62329357	62329557	-	1	NA	NA	NA	31091	NM_001045528	338355	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.015000	0.482587	
mm_29616.1	chr3	121282955	121283155	-	1	NA	NA	NA	-8762	NM_024178	66789	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0.005000	0.497512	-6(GGCCTTATAGAG,-,0.00),-4(CCTTATAGAGTC,+,0.00)
mm_14617.1	chr2	136758217	136758417	+	1	NA	NA	NA	44867	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.010000	0.432836	
mm_104108.1	chr11	86711795	86711995	-	1	NA	NA	NA	27814	NM_001098810	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.010000	0.402985	
mm_133880.1	chr16	96499146	96499346	+	1	NA	NA	NA	31640	NM_008791	18546	Mm.5023	NM_008791	ENSMUSG00000090223	Pcp4	P16Rimb19|Pcp-4|Pep19	Purkinje cell protein 4	protein-coding	0.010000	0.522388	
mm_1742.1	chr1	75450498	75450698	+	1	NA	NA	NA	88	NM_183022	241118	Mm.110790	NM_183022	ENSMUSG00000033007	Asic4	Accn4|BNAC4	acid-sensing (proton-gated) ion channel family member 4	protein-coding	0.070000	0.691542	
mm_122344.1	chr14	37135911	37136111	-	1	NA	NA	NA	-689	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.000000	0.308458	
mm_14833.1	chr2	147364900	147365100	+	1	NA	NA	NA	6	NM_008780	18503	Mm.315502	NM_008780	ENSMUSG00000037034	Pax1	Pax-1|hbs|hunchback|un|undulated|wt	paired box 1	protein-coding	0.070000	0.597015	
mm_163897.1	chr14	27555278	27555478	-	1	NA	NA	NA	-46918	NM_177111	320234	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	0.015000	0.412935	
mm_78565.1	chr9	35908203	35908403	+	1	NA	NA	NA	-58423	NR_030730	100041605	Mm.99350	NR_030730	ENSMUSG00000098705	Gm3428	-	predicted gene 3428	ncRNA	0.000000	0.363184	
mm_41778.1	chr5	103715226	103715426	+	1	NA	NA	NA	-38836	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.010000	0.502488	52(TGGCTTTTAAGG,-,0.00),53(GGCTTTTAAGGA,-,0.00),54(GCTTTTAAGGAC,+,0.00)
mm_10034.1	chr1	192771122	192771322	-	1	NA	NA	NA	-3	NM_144881	226861	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0.035000	0.572139	
mm_126198.1	chr15	78850875	78851075	+	1	NA	NA	NA	4554	NM_025622	107753	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	0.005000	0.542289	-54(GACCCTAAAGGC,-,0.00)
mm_12748.1	chr2	79231182	79231382	+	1	NA	NA	NA	-24144	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.000000	0.432836	
mm_31863.1	chr4	80002627	80002827	+	1	NA	NA	NA	-831486	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.015000	0.402985	
mm_53785.1	chr6	146577861	146578061	+	1	NA	NA	NA	50	NM_026218	67529	Mm.333499	NM_026218	ENSMUSG00000040242	Fgfr1op2	1500031J01Rik	FGFR1 oncogene partner 2	protein-coding	0.125000	0.701493	
mm_92058.1	chr10	62508054	62508254	-	1	NA	NA	NA	-399	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.045000	0.567164	
mm_8063.1	chr1	135430358	135430558	-	1	NA	NA	NA	33	NM_153774	226432	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9|mKIAA1192	importin 9	protein-coding	0.130000	0.736318	
mm_108343.1	chr12	80435015	80435215	+	1	NA	NA	NA	1486	NM_177267	320808	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	0.125000	0.761194	
mm_45212.1	chr5	52994044	52994244	-	1	NA	NA	NA	-1852	NR_040413	75954	Mm.258937	NR_040413	ENSMUSG00000106352	5033403H07Rik	-	RIKEN cDNA 5033403H07 gene	ncRNA	0.035000	0.487562	
mm_164448.1	chr16	49913195	49913395	+	1	NA	NA	NA	57641	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.030000	0.447761	
mm_89446.1	chr10	93122910	93123110	+	1	NA	NA	NA	-37866	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.010000	0.348259	
mm_154470.1	chrM	3666	3866	-	1	NA	NA	NA	NA	NA									0.010000	0.333333	
mm_72704.1	chr8	84978880	84979080	+	1	NA	NA	NA	-232	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.045000	0.592040	
mm_163424.1	chr12	81764385	81764585	-	1	NA	NA	NA	16685	NM_177395	338372	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.010000	0.517413	
mm_21493.1	chr2	163397793	163397993	-	1	NA	NA	NA	80	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	0.035000	0.577114	
mm_104326.1	chr11	93967938	93968138	-	1	NA	NA	NA	483	NM_008704	18102	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	0.060000	0.621891	
mm_75081.1	chr8	33914489	33914689	-	1	NA	NA	NA	15274	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.035000	0.437811	
mm_166844.1	chr7	19696356	19696556	+	1	NA	NA	NA	1942	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.025000	0.562189	
mm_136102.1	chr16	85123737	85123937	-	1	NA	NA	NA	49870	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.000000	0.412935	
mm_95070.1	chr11	32562970	32563170	+	1	NA	NA	NA	29804	NM_009288	20868	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.005000	0.432836	
mm_110273.1	chr12	31996880	31997080	-	1	NA	NA	NA	-46445	NM_153198	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.015000	0.477612	
mm_31084.1	chr4	41630471	41630671	+	1	NA	NA	NA	9731	NM_027147	69638	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.015000	0.542289	
mm_129496.1	chr15	78844773	78844973	-	1	NA	NA	NA	2226	NM_027219	104445	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	0.030000	0.562189	47(CCCTATAAAAAC,-,0.00)
mm_82653.1	chr9	22046335	22046535	-	1	NA	NA	NA	5588	NM_010487	15571	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	protein-coding	0.010000	0.462687	
mm_24883.1	chr3	96086613	96086813	+	1	NA	NA	NA	6117	NR_035496	100316714		NR_035496	ENSMUSG00000088478	Mir1946b	mmu-mir-1946b	microRNA 1946b	ncRNA	0.030000	0.472637	
mm_5230.1	chr1	14309958	14310158	-	1	NA	NA	NA	141	NM_001310459	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.080000	0.557214	
mm_58264.1	chr6	145306552	145306752	-	1	NA	NA	NA	56100	NR_045598	100039495	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	OTTMUSG00000025463	predicted gene 15706	ncRNA	0.010000	0.368159	
mm_153667.1	chr19	44395904	44396104	-	1	NA	NA	NA	11705	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.000000	0.472637	
mm_16472.1	chr2	180710250	180710450	+	1	NA	NA	NA	22	NM_001289651	76425	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	0.130000	0.761194	
mm_146406.1	chr18	83812906	83813106	+	1	NA	NA	NA	273556	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.000000	0.472637	
mm_167457.1	chr8	123280863	123281063	+	1	NA	NA	NA	-26741	NM_028200	72325	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	0.020000	0.487562	
mm_34828.1	chr4	155217447	155217647	+	1	NA	NA	NA	4988	NM_011385	20481	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.010000	0.572139	
mm_54047.1	chr6	13828919	13829119	-	1	NA	NA	NA	10923	NM_001330666	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.005000	0.373134	
mm_20964.1	chr2	151970715	151970915	-	1	NA	NA	NA	2579	NM_001289151	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.060000	0.621891	
mm_76211.1	chr8	83442489	83442689	-	1	NA	NA	NA	73	NM_001285992	56367	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	0.080000	0.631841	
mm_145054.1	chr18	40270445	40270645	+	1	NA	NA	NA	12184	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.005000	0.363184	
mm_33038.1	chr4	122858469	122858669	+	1	NA	NA	NA	22342	NM_008917	19063	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.005000	0.388060	
mm_30124.1	chr3	141931322	141931522	-	1	NA	NA	NA	166	NM_001277218	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.030000	0.562189	
mm_136632.1	chr17	5688010	5688210	+	1	NA	NA	NA	-110547	NR_045081	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.000000	0.512438	
mm_96871.1	chr11	70207116	70207316	+	1	NA	NA	NA	-6694	NM_153081	216867	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0.010000	0.378109	
mm_62669.1	chr7	108950600	108950800	+	1	NA	NA	NA	16285	NM_025344	66085	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0.105000	0.716418	
mm_96987.1	chr11	70657103	70657303	+	1	NA	NA	NA	27	NM_007933	13808	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.005000	0.572139	
mm_155816.1	chrX	100524738	100524938	+	1	NA	NA	NA	0	NM_001114084	668257	Mm.95646	NM_001114084	ENSMUSG00000067597	Dgat2l6	9930021F22Rik	diacylglycerol O-acyltransferase 2-like 6	protein-coding	0.015000	0.522388	
mm_87690.1	chr10	59403557	59403757	+	1	NA	NA	NA	-28	NM_023530	69836	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	0.045000	0.601990	
mm_5411.1	chr1	33814381	33814581	-	1	NA	NA	NA	114	NM_133817	98403	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	0.165000	0.766169	
mm_51677.1	chr6	86438621	86438821	+	1	NA	NA	NA	75	NM_001243741	232196	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	0.090000	0.582090	
mm_106200.1	chr11	116843057	116843257	-	1	NA	NA	NA	292	NM_033398	107817	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	0.145000	0.681592	
mm_9825.1	chr1	182517322	182517522	-	1	NA	NA	NA	61	NM_009794	12334	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.135000	0.741294	
mm_156480.1	chrX	144317700	144317900	+	1	NA	NA	NA	-166	NR_037145	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.050000	0.542289	
mm_2695.1	chr1	127774111	127774311	+	1	NA	NA	NA	47	NM_028399	72949	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	0.110000	0.701493	
mm_13579.1	chr2	112376895	112377095	+	1	NA	NA	NA	-2216	NM_024254	72425	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	0.020000	0.592040	
mm_67255.1	chr7	75613152	75613352	-	1	NA	NA	NA	157718	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.020000	0.333333	66(AGCCTTAAAAAC,-,0.00)
mm_20615.1	chr2	131855294	131855494	-	1	NA	NA	NA	4353	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	0.005000	0.482587	
mm_126085.1	chr15	77849699	77849899	+	1	NA	NA	NA	-7624	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.015000	0.567164	
mm_160335.1	chr8	13287770	13287970	+	1	NA	NA	NA	-143	NM_172282	234076	Mm.219813	NM_172282	ENSMUSG00000038497	Tmco3	B230339H12Rik|C87304	transmembrane and coiled-coil domains 3	protein-coding	0.105000	0.661692	
mm_13598.1	chr2	112618324	112618524	+	1	NA	NA	NA	58742	NM_001165935	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.005000	0.457711	
mm_14403.1	chr2	130123184	130123384	+	1	NA	NA	NA	9	NM_177726	241636	Mm.83437	NM_177726	ENSMUSG00000027403	Tgm6	TGM3L|TGY	transglutaminase 6	protein-coding	0.025000	0.562189	
mm_32155.1	chr4	99955600	99955800	+	1	NA	NA	NA	26249	NM_028132	72157	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.035000	0.537313	
mm_101970.1	chr11	50310731	50310931	-	1	NA	NA	NA	14842	NM_001110499	12330	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	0.000000	0.417910	
mm_53522.1	chr6	136518736	136518936	+	1	NA	NA	NA	-15	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.110000	0.641791	
mm_79181.1	chr9	48361945	48362145	+	1	NA	NA	NA	4	NM_172921	244853	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	0.010000	0.482587	-37(AACTATTAAAGG,-,0.00)
mm_133242.1	chr16	77085377	77085577	+	1	NA	NA	NA	71408	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.000000	0.333333	
mm_19253.1	chr2	84773434	84773634	-	1	NA	NA	NA	1895	NM_009776	12258	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.015000	0.537313	
mm_138488.1	chr17	35200226	35200426	+	1	NA	NA	NA	1681	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.025000	0.587065	
mm_158917.1	chr1	54250666	54250866	+	1	NA	NA	NA	83	NM_030025	78016	Mm.67455	NM_030025	ENSMUSG00000025983	Ccdc150	4930511H11Rik	coiled-coil domain containing 150	protein-coding	0.060000	0.621891	
mm_142842.1	chr17	51796052	51796252	-	1	NA	NA	NA	15902	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.025000	0.512438	
mm_39622.1	chr5	24423758	24423958	+	1	NA	NA	NA	-328	NM_007668	12568	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding	0.070000	0.597015	
mm_144240.1	chr18	10725447	10725647	+	1	NA	NA	NA	-78	NM_144860	225164	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0.095000	0.641791	
mm_61052.1	chr7	49910115	49910315	+	1	NA	NA	NA	-84	NM_001146013	104245	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	0.050000	0.507463	-38(CCCTTTAAAATC,+,0.00),-37(CCTTTAAAATCC,+,0.00)
mm_131168.1	chr16	7039618	7039818	+	1	NA	NA	NA	-30117	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.030000	0.557214	
mm_60216.1	chr7	43465915	43466115	+	1	NA	NA	NA	2782	NM_001290316	75690	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.025000	0.562189	
mm_82848.1	chr9	31170475	31170675	-	1	NA	NA	NA	-38776	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.020000	0.507463	-36(CCTTATATAGCT,+,0.00)
mm_92655.1	chr10	80406701	80406901	-	1	NA	NA	NA	20	NM_025650	66594	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0.080000	0.601990	
mm_35534.1	chr4	41314683	41314883	-	1	NA	NA	NA	118	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.080000	0.597015	
mm_158196.1	chrX	104857155	104857355	-	1	NA	NA	NA	12	NM_053206	272790	Mm.165776	NM_053206	ENSMUSG00000031224	Magee2	9630059J11Rik|BB131182|Mage-e2	melanoma antigen, family E, 2	protein-coding	0.050000	0.582090	
mm_85836.1	chr9	110532256	110532456	-	1	NA	NA	NA	-241	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.095000	0.731343	-42(GCCCCTTAAAGA,-,0.00),-41(CCCCTTAAAGAG,-,0.00),-39(CCTTAAAGAGAC,+,0.00)
mm_163189.1	chr11	94951883	94952083	+	1	NA	NA	NA	-15610	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.000000	0.477612	
mm_160901.1	chr11	75449721	75449921	-	1	NA	NA	NA	4896	NM_138950	192652	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0.025000	0.592040	
mm_86248.1	chr9	121452372	121452572	-	1	NA	NA	NA	43222	NM_001284508	12424	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.000000	0.522388	-35(GCTTTAAGATCC,+,0.00)
mm_43608.1	chr5	137928577	137928777	+	1	NA	NA	NA	-7058	NM_007819	13113	Mm.289886	NM_007819	ENSMUSG00000029727	Cyp3a13	IIIAm2	cytochrome P450, family 3, subfamily a, polypeptide 13	protein-coding	0.025000	0.507463	
mm_129955.1	chr15	85106890	85107090	-	1	NA	NA	NA	24967	NM_080470	140557	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	0.000000	0.368159	
mm_123378.1	chr14	63271535	63271735	-	1	NA	NA	NA	-26364	NM_001310610	14463	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0.020000	0.592040	
mm_142495.1	chr17	46024409	46024609	-	1	NA	NA	NA	654	NM_001110267	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.010000	0.562189	
mm_53567.1	chr6	137252352	137252552	+	1	NA	NA	NA	153	NM_011216	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.080000	0.656716	
mm_153676.1	chr19	44396433	44396633	-	1	NA	NA	NA	11176	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.517413	
mm_61833.1	chr7	88280515	88280715	+	1	NA	NA	NA	2530	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.010000	0.363184	
mm_109918.1	chr12	8496698	8496898	-	1	NA	NA	NA	3187	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.000000	0.412935	
mm_155981.1	chrX	106126904	106127104	+	1	NA	NA	NA	-16271	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.000000	0.258706	
mm_111181.1	chr12	83951461	83951661	-	1	NA	NA	NA	953	NM_023633	71952	Mm.251483	NM_023633	ENSMUSG00000046791	2410016O06Rik	MAPJD|NO66	RIKEN cDNA 2410016O06 gene	protein-coding	0.085000	0.631841	
mm_91073.1	chr10	19009336	19009536	-	1	NA	NA	NA	2527	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.010000	0.373134	
mm_23856.1	chr3	83010365	83010565	+	1	NA	NA	NA	2741	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.030000	0.462687	
mm_167142.1	chr7	127946423	127946623	-	1	NA	NA	NA	202	NM_001319147	77613	Mm.334253	NM_001081374	ENSMUSG00000070371	Prss36	C330007D15Rik	protease, serine 36	protein-coding	0.005000	0.577114	
mm_37039.1	chr4	115496038	115496238	-	1	NA	NA	NA	3	NM_007822	13119	Mm.250901	NM_007822	ENSMUSG00000028715	Cyp4a14	AI314743	cytochrome P450, family 4, subfamily a, polypeptide 14	protein-coding	0.005000	0.437811	
mm_1882.1	chr1	85663459	85663659	+	1	NA	NA	NA	13571	NM_001313714	20684	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.000000	0.442786	
mm_23778.1	chr3	77760062	77760262	+	1	NA	NA	NA	1384725	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.358209	
mm_105442.1	chr11	104403496	104403696	-	1	NA	NA	NA	38695	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.005000	0.358209	
mm_80894.1	chr9	99629738	99629938	+	1	NA	NA	NA	260	NM_001311142	72507	Mm.221455	NM_028258	ENSMUSG00000037784	Dzip1l	2610524A10Rik|AI663976	DAZ interacting protein 1-like	protein-coding	0.085000	0.641791	
mm_84599.1	chr9	70037984	70038184	-	1	NA	NA	NA	4	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.010000	0.487562	47(CTCTTTATAAGG,-,0.00),49(CTTTATAAGGGA,+,0.00)
mm_41959.1	chr5	106294056	106294256	+	1	NA	NA	NA	-27184	NR_136913	102635633	Mm.383511	NR_136913	ENSMUSG00000105508	Gm32921	-	predicted gene, 32921	ncRNA	0.005000	0.442786	
mm_4943.1	chr1	191185801	191186001	+	1	NA	NA	NA	-2568	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.035000	0.537313	
mm_539.1	chr1	37998059	37998259	+	1	NA	NA	NA	149	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.120000	0.711443	
mm_36175.1	chr4	62150718	62150918	-	1	NA	NA	NA	23	NM_001009550	381531	Mm.472122	NM_001009550	ENSMUSG00000066153	Mup21	Gm11208|Mup|Mup26|OTTMUSG00000000231|bM64F17.1|bM64F17.4	major urinary protein 21	protein-coding	0.005000	0.467662	-34(GAGTATATAAGG,-,0.00)
mm_3205.1	chr1	135818786	135818986	+	1	NA	NA	NA	288	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding	0.135000	0.746269	
mm_68600.1	chr7	116237552	116237752	-	1	NA	NA	NA	124	NM_001305186	233765	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.125000	0.726368	
mm_42340.1	chr5	114903665	114903865	+	1	NA	NA	NA	6831	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.010000	0.477612	
mm_139604.1	chr17	57285263	57285463	+	1	NA	NA	NA	6263	NM_001163815	22324	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.010000	0.492537	
mm_161919.1	chr18	70472489	70472689	+	1	NA	NA	NA	17	NM_001289648	170461	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	0.070000	0.626866	
mm_89260.1	chr10	87859280	87859480	+	1	NA	NA	NA	328	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.015000	0.368159	
mm_46882.1	chr5	113908603	113908803	-	1	NA	NA	NA	3	NM_011779	23790	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0.160000	0.805970	
mm_72178.1	chr8	72319495	72319695	+	1	NA	NA	NA	533	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.110000	0.736318	
mm_95330.1	chr11	46750470	46750670	+	1	NA	NA	NA	59	NM_001166631	171283	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	0.005000	0.383085	-34(GGGCTTAAAAGT,-,0.00)
mm_131946.1	chr16	24393304	24393504	+	1	NA	NA	NA	54	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.075000	0.691542	
mm_123518.1	chr14	66296766	66296966	-	1	NA	NA	NA	-159	NM_029979	66854	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	0.060000	0.572139	
mm_101458.1	chr11	30267522	30267722	-	1	NA	NA	NA	-47850	NM_175836	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.105000	0.741294	
mm_2267.1	chr1	91179963	91180163	+	1	NA	NA	NA	241	NM_001168392	51801	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	0.120000	0.771144	
mm_62094.1	chr7	94055278	94055478	+	1	NA	NA	NA	975499	NM_021427	58238	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.000000	0.313433	35(TTTTTTAAGGGG,+,0.00)
mm_129351.1	chr15	77915586	77915786	-	1	NA	NA	NA	13308	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.010000	0.562189	
mm_109116.1	chr12	105563033	105563233	+	1	NA	NA	NA	-39	NM_009747	12062	Mm.390475	NM_009747	ENSMUSG00000021070	Bdkrb2	B(2)|B2|B2R|BK-2|BK2|BK2R|BKR2|BRB2	bradykinin receptor, beta 2	protein-coding	0.035000	0.616915	
mm_168244.1	chr10	81978565	81978765	+	1	NA	NA	NA	-48153	NM_001346707	100040944		NM_001346707		Gm3055	-	predicted gene 3055	protein-coding	0.055000	0.592040	
mm_103453.1	chr11	76243596	76243796	-	1	NA	NA	NA	3	NM_026029	67201	Mm.482113	NM_026029	ENSMUSG00000017286	Glod4	1700082G03Rik|2700085E05Rik|C81254	glyoxalase domain containing 4	protein-coding	0.110000	0.626866	
mm_137491.1	chr17	26948850	26949050	+	1	NA	NA	NA	-831	NR_037244	100526534		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0.145000	0.781095	
mm_47216.1	chr5	121009539	121009739	-	1	NA	NA	NA	-101	NM_011286	19894	Mm.181166	NM_011286	ENSMUSG00000029608	Rph3a	2900002P20Rik|AU022689|AW108370	rabphilin 3A	protein-coding	0.050000	0.651741	
mm_83264.1	chr9	42461325	42461525	-	1	NA	NA	NA	10801	NM_173038	272589	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0.015000	0.447761	66(GGCTTTAAAACG,-,0.00),67(GCTTTAAAACGA,+,0.00)
mm_21443.1	chr2	160334017	160334217	-	1	NA	NA	NA	-6623	NM_001033411	329554	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.015000	0.557214	
mm_81858.1	chr9	118703681	118703881	+	1	NA	NA	NA	-7911	NM_001113514	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.005000	0.358209	
mm_100110.1	chr11	115780676	115780876	+	1	NA	NA	NA	-15048	NR_049194	100885833		NR_049194	ENSMUSG00000093539	Mir5621	Gm22564|mir-5621|mmu-mir-5621	microRNA 5621	ncRNA	0.035000	0.567164	
mm_80086.1	chr9	70207306	70207506	+	1	NA	NA	NA	56	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.040000	0.547264	-88(CCATTTATGGAC,+,0.00)
mm_10754.1	chr2	23197721	23197921	+	1	NA	NA	NA	-9655	NM_027635	70981	Mm.314026	NM_027635	ENSMUSG00000026774	4931423N10Rik	-	RIKEN cDNA 4931423N10 gene	protein-coding	0.005000	0.333333	
mm_151795.1	chr19	5408350	5408550	-	1	NA	NA	NA	1635	NR_027938	74931	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	0.015000	0.477612	-22(CTCTATATATAG,-,0.00),-20(CTATATATAGTC,+,0.00)
mm_172904.1	chr9	58582846	58583046	+	1	NA	NA	NA	706	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.025000	0.562189	
mm_81441.1	chr9	109105206	109105406	+	1	NA	NA	NA	9870	NM_172775	235611	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.055000	0.656716	
mm_117560.1	chr13	85245021	85245221	-	1	NA	NA	NA	44365	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.005000	0.278607	66(CAATATAAAAAG,-,0.00)
mm_165720.1	chr3	101428748	101428948	+	1	NA	NA	NA	51723	NM_207205	78908	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	0.010000	0.477612	
mm_88583.1	chr10	79704406	79704606	+	1	NA	NA	NA	148	NM_009768	12215	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	0.145000	0.746269	-31(CTTCTTATAGAG,+,0.00),-29(TCTTATAGAGCC,+,0.00)
mm_138011.1	chr17	33893106	33893306	+	1	NA	NA	NA	-2573	NM_001195298	100502766	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	0.010000	0.517413	-19(GCTTTAAGACCC,+,0.00)
mm_156602.1	chrX	153006383	153006583	+	1	NA	NA	NA	14	NM_001137547	635253	Mm.426169	NM_001137547	ENSMUSG00000067215	Usp51	AV136873	ubiquitin specific protease 51	protein-coding	0.045000	0.631841	
mm_55655.1	chr6	72381593	72381793	-	1	NA	NA	NA	-1225	NM_001080742	53620	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0.025000	0.427861	24(CCTTTACAAGTC,+,0.00)
mm_166281.1	chr5	96162093	96162293	-	1	NA	NA	NA	-203	NM_144910	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.175000	0.825871	
mm_32106.1	chr4	98733851	98734051	+	1	NA	NA	NA	7197	NM_001081202	381591	Mm.34340	NM_001081202	ENSMUSG00000087166	L1td1	AA546746|AB211064|D76865|ECAT11	LINE-1 type transposase domain containing 1	protein-coding	0.030000	0.512438	
mm_22773.1	chr3	20266331	20266531	+	1	NA	NA	NA	9302	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.020000	0.452736	
mm_81227.1	chr9	107655840	107656040	+	1	NA	NA	NA	11459	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.015000	0.527363	5(CTGTATATATGG,-,0.00)
mm_71954.1	chr8	70510384	70510584	+	1	NA	NA	NA	-117	NM_019883	22186	Mm.297372	NM_019883	ENSMUSG00000090137	Uba52	D8Ertd21e|Gm1863|Rps27a|Ubb|Ubc	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding	0.105000	0.641791	
mm_62730.1	chr7	110802995	110803195	+	1	NA	NA	NA	30491	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.025000	0.587065	
mm_64706.1	chr7	4603033	4603233	-	1	NA	NA	NA	908	NM_207270	545902	Mm.188925	NM_207270	ENSMUSG00000035429	Ptprh	R-PTP-H|sap-1	protein tyrosine phosphatase, receptor type, H	protein-coding	0.025000	0.562189	
mm_153679.1	chr19	44396508	44396708	-	1	NA	NA	NA	11101	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.477612	
mm_79782.1	chr9	62868578	62868778	+	1	NA	NA	NA	-6654	NR_003965	677044	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	ENSMUSG00000074250	ribsomal protein S2 pseudogene	pseudo	0.015000	0.606965	
mm_115732.1	chr13	17772619	17772819	-	1	NA	NA	NA	25246	NR_035412	100316665		NR_035412	ENSMUSG00000080574	Mir466i	Mirn466i|mmu-mir-466i	microRNA 466i	ncRNA	0.005000	0.492537	
mm_72016.1	chr8	70718415	70718615	+	1	NA	NA	NA	-28	NM_001195253	100502950	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0.070000	0.696517	
mm_86494.1	chr10	5594674	5594874	+	1	NA	NA	NA	1046	NM_026793	68632	Mm.338242	NM_026793	ENSMUSG00000046916	Myct1	1110020B04Rik|AI225941|AI642973|Mtmc1	myc target 1	protein-coding	0.015000	0.412935	
mm_6376.1	chr1	72537196	72537396	-	1	NA	NA	NA	-732	NM_001045533	381270	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	0.025000	0.562189	
mm_77954.1	chr9	7566098	7566298	+	1	NA	NA	NA	-5198	NM_001310717	234911	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.005000	0.427861	-4(GGCTCTAAGTGG,-,0.00)
mm_121937.1	chr14	24004192	24004392	-	1	NA	NA	NA	-87	NM_001253374	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.115000	0.771144	
mm_37272.1	chr4	118548172	118548372	-	1	NA	NA	NA	-4546	NM_172383	230678	Mm.23639	NM_172383	ENSMUSG00000050854	Tmem125	6330530A05Rik|AV223516	transmembrane protein 125	protein-coding	0.030000	0.631841	
mm_51482.1	chr6	83039180	83039380	+	1	NA	NA	NA	5056	NM_013586	16950	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	0.010000	0.333333	
mm_52781.1	chr6	121252472	121252672	+	1	NA	NA	NA	6666	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.020000	0.527363	
mm_56644.1	chr6	113343882	113344082	-	1	NA	NA	NA	-60	NM_133926	52163	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	0.070000	0.666667	
mm_168458.1	chr1	143683098	143683298	+	1	NA	NA	NA	19695	NM_145991	214498	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	0.020000	0.432836	
mm_115714.1	chr13	15902415	15902615	-	1	NA	NA	NA	95272	NR_046131	328190	Mm.446957	NR_046131		A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0.005000	0.348259	
mm_16361.1	chr2	174598564	174598764	+	1	NA	NA	NA	-44870	NM_001099328	100043757	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	ENSMUSG00000050600|OTTMUSG00000017459	zinc finger protein 831	protein-coding	0.040000	0.532338	
mm_91703.1	chr10	44004404	44004604	-	1	NA	NA	NA	342	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.035000	0.592040	
mm_81834.1	chr9	118478349	118478549	+	1	NA	NA	NA	260	NM_010136	13813	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	0.055000	0.582090	
mm_31233.1	chr4	44664304	44664504	+	1	NA	NA	NA	-38396	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0.165000	0.766169	
mm_52585.1	chr6	116651688	116651888	+	1	NA	NA	NA	1104	NM_001166580	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.035000	0.601990	
mm_144200.1	chr18	9212099	9212299	+	1	NA	NA	NA	-657	NM_008058	14370	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0.050000	0.577114	
mm_91607.1	chr10	41477118	41477318	-	1	NA	NA	NA	904	NM_138315	171580	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0.035000	0.577114	
mm_10763.1	chr2	24186343	24186543	+	1	NA	NA	NA	-33	NM_153511	215257	Mm.249379	NM_153511	ENSMUSG00000044103	Il1f9	Il36g	interleukin 1 family, member 9	protein-coding	0.005000	0.497512	-33(CCCCATAAAAGA,-,0.00)
mm_108759.1	chr12	89081282	89081482	+	1	NA	NA	NA	127992	NM_172544	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.010000	0.398010	
mm_50189.1	chr6	41684328	41684528	+	1	NA	NA	NA	-3	NM_029671	76606	Mm.272520	NM_029671	ENSMUSG00000029867	1700034O15Rik	-	RIKEN cDNA 1700034O15 gene	protein-coding	0.010000	0.482587	
mm_19607.1	chr2	102568844	102569044	-	1	NA	NA	NA	18923	NM_173749	210622	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	0.000000	0.383085	-64(CCTTTTCTAGGA,+,0.00)
mm_58437.1	chr7	3297796	3297996	+	1	NA	NA	NA	4868	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.010000	0.407960	
mm_150271.1	chr19	34241678	34241878	+	1	NA	NA	NA	13595	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.040000	0.542289	
mm_1556.1	chr1	73024488	73024688	+	1	NA	NA	NA	2	NR_038002	69449	Mm.250447	NR_038001	ENSMUSG00000101968	1700027A15Rik	-	RIKEN cDNA 1700027A15 gene	ncRNA	0.015000	0.522388	-8(TCTTATAAAGGG,+,0.00)
mm_85335.1	chr9	102618797	102618997	-	1	NA	NA	NA	7227	NM_001301689	28135	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	0.035000	0.522388	
mm_92201.1	chr10	68136590	68136790	-	1	NA	NA	NA	142036	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.040000	0.597015	
mm_167755.1	chr9	110422275	110422475	-	1	NA	NA	NA	2567	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.015000	0.442786	
mm_117863.1	chr13	98840197	98840397	-	1	NA	NA	NA	-24848	NM_172591	218503	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.010000	0.402985	
mm_64109.1	chr7	141061003	141061203	+	1	NA	NA	NA	-171	NM_177897	330671	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.120000	0.736318	
mm_6996.1	chr1	86359270	86359470	-	1	NA	NA	NA	85	NM_010880	17975	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	0.090000	0.621891	
mm_90139.1	chr10	118052815	118053015	+	1	NA	NA	NA	-88872	NM_001162904	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.030000	0.507463	
mm_118304.1	chr13	113100880	113101080	-	1	NA	NA	NA	1	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.015000	0.462687	
mm_138941.1	chr17	44026583	44026783	+	1	NA	NA	NA	-52119	NM_001168620	83965	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	0.010000	0.422886	
mm_142045.1	chr17	35505823	35506023	-	1	NA	NA	NA	-109	NM_013633	18999	Mm.17031	NM_013633	ENSMUSG00000024406	Pou5f1	NF-A3|Oct-3|Oct-3/4|Oct-4|Oct3|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4	POU domain, class 5, transcription factor 1	protein-coding	0.030000	0.621891	
mm_12808.1	chr2	80302215	80302415	+	1	NA	NA	NA	9845	NM_177256	320769	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	0.000000	0.378109	
mm_148013.1	chr18	68300111	68300311	-	1	NA	NA	NA	122	NM_153794	108654	Mm.125857	NM_153794	ENSMUSG00000038121	Fam210a	4933403F05Rik|AA987140|AV134576|AW491926	family with sequence similarity 210, member A	protein-coding	0.115000	0.716418	
mm_172697.1	chr8	63815946	63816146	+	1	NA	NA	NA	136124	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding	0.015000	0.452736	
mm_129257.1	chr15	76710440	76710640	-	1	NA	NA	NA	19	NM_058214	79456	Mm.18373	NM_058214	ENSMUSG00000033762	Recql4	RecQ4	RecQ protein-like 4	protein-coding	0.120000	0.686567	
mm_45937.1	chr5	90223872	90224072	-	1	NA	NA	NA	24	NR_028088	231430	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	0.100000	0.671642	
mm_37960.1	chr4	133352764	133352964	-	1	NA	NA	NA	-13549	NM_199306	230796	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	0.040000	0.557214	
mm_82388.1	chr9	14663008	14663208	-	1	NA	NA	NA	-48108	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.015000	0.547264	
mm_96096.1	chr11	60417471	60417671	+	1	NA	NA	NA	426	NM_025757	66771	Mm.29950	NM_025757	ENSMUSG00000018415	Gid4	4933439F18Rik	GID complex subunit 4, VID24 homolog	protein-coding	0.135000	0.786070	
mm_91240.1	chr10	22306306	22306506	-	1	NA	NA	NA	-314	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.015000	0.482587	
mm_53238.1	chr6	127453611	127453811	+	1	NA	NA	NA	-12	NM_181402	101187	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.080000	0.626866	
mm_156711.1	chrX	159627407	159627607	+	1	NA	NA	NA	235	NM_001135727	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.105000	0.736318	
mm_93002.1	chr10	86885723	86885923	-	1	NA	NA	NA	106818	NM_175331	103466	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.005000	0.482587	
mm_96840.1	chr11	70023840	70024040	+	1	NA	NA	NA	5335	NM_007864	13385	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs, large homolog 4 (Drosophila)	protein-coding	0.070000	0.671642	
mm_97246.1	chr11	75742154	75742354	+	1	NA	NA	NA	9367	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.000000	0.432836	
mm_1151.1	chr1	60778646	60778846	+	1	NA	NA	NA	32358	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.015000	0.487562	-32(CTATTTATAGGT,+,0.00)
mm_128055.1	chr15	25843515	25843715	-	1	NA	NA	NA	317	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.065000	0.726368	
mm_153085.1	chr19	32388345	32388545	-	1	NA	NA	NA	9	NM_144792	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.145000	0.761194	
mm_116199.1	chr13	31984725	31984925	-	1	NA	NA	NA	178179	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.000000	0.318408	
mm_74025.1	chr8	121730246	121730446	+	1	NA	NA	NA	-213	NM_020605	57340	Mm.306870	NM_020605	ENSMUSG00000025318	Jph3	JP-3|Jp3	junctophilin 3	protein-coding	0.155000	0.781095	
mm_72736.1	chr8	85084336	85084536	+	1	NA	NA	NA	1167	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.020000	0.532338	
mm_56281.1	chr6	91320945	91321145	-	1	NA	NA	NA	90324	NM_009527	22421	Mm.56964	NM_009527	ENSMUSG00000030093	Wnt7a	AI849442|Wnt-7a|px|tw	wingless-type MMTV integration site family, member 7A	protein-coding	0.020000	0.393035	
mm_121702.1	chr14	14781238	14781438	-	1	NA	NA	NA	-39477	NM_001195229	674895	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.010000	0.497512	
mm_139715.1	chr17	57463279	57463479	+	1	NA	NA	NA	81935	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.000000	0.353234	
mm_22067.1	chr2	168733998	168734198	-	1	NA	NA	NA	241	NM_001289445	11981	Mm.330819	NM_015731	ENSMUSG00000027546	Atp9a	IIa	ATPase, class II, type 9A	protein-coding	0.025000	0.611940	
mm_90660.1	chr10	128805522	128805722	+	1	NA	NA	NA	-54	NM_028873	74330	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	0.095000	0.706468	
mm_135161.1	chr16	35866103	35866303	-	1	NA	NA	NA	5179	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.010000	0.472637	19(GCCTCTAAGAAG,-,0.00)
mm_87801.1	chr10	60300116	60300316	+	1	NA	NA	NA	15755	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.015000	0.527363	
mm_23449.1	chr3	60006771	60006971	+	1	NA	NA	NA	128	NM_001128091	639634	Mm.475611	NM_001128091	ENSMUSG00000091376	Aadacl2	EG639634	arylacetamide deacetylase-like 2	protein-coding	0.005000	0.353234	
mm_7159.1	chr1	91540284	91540484	-	1	NA	NA	NA	-181	NM_001039126	65247	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	0.085000	0.616915	
mm_28781.1	chr3	95990779	95990979	-	1	NA	NA	NA	4960	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.030000	0.527363	
mm_27588.1	chr3	59130489	59130689	-	1	NA	NA	NA	173	NM_001008497	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.035000	0.537313	
mm_117224.1	chr13	64152627	64152827	-	1	NA	NA	NA	472	NM_175494	238673	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	0.145000	0.731343	
mm_13455.1	chr2	105660706	105660906	+	1	NA	NA	NA	537	NR_117095	103164605	Mm.444995	NR_117095	ENSMUSG00000102424	Paupar	-	Pax6 upstream antisense RNA	ncRNA	0.055000	0.592040	-33(GCTTTAAGAGTT,+,0.00)
mm_48725.1	chr5	147400216	147400416	-	1	NA	NA	NA	173	NM_010229	14255	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	0.110000	0.716418	
mm_56402.1	chr6	97148781	97148981	-	1	NA	NA	NA	2	NM_175313	101351	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	0.130000	0.766169	
mm_120916.1	chr14	76414852	76415052	+	1	NA	NA	NA	-9	NM_001310646	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.110000	0.711443	
mm_15230.1	chr2	154551679	154551879	+	1	NA	NA	NA	3	NM_001171640	70362	Mm.479620	NM_001171640	ENSMUSG00000078129	Actl10	1700007I08Rik	actin-like 10	protein-coding	0.010000	0.517413	
mm_40373.1	chr5	52190624	52190824	+	1	NA	NA	NA	43	NR_015537	414108	Mm.383512	NR_015537	ENSMUSG00000097145	9230114K14Rik	-	RIKEN cDNA 9230114K14 gene	ncRNA	0.045000	0.507463	85(GCTTTTAGGGTA,+,0.00)
mm_32802.1	chr4	117112925	117113125	+	1	NA	NA	NA	12700	NR_024078	78611	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0.020000	0.447761	
mm_168433.1	chr1	135231954	135232154	+	1	NA	NA	NA	26418	NM_001163131	13710	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0.090000	0.606965	
mm_46580.1	chr5	107431837	107432037	-	1	NA	NA	NA	388	NM_027599	70902	Mm.55870	NM_027599	ENSMUSG00000033794	Lpcat2b	4921521K07Rik|Aytl1b	lysophosphatidylcholine acyltransferase 2B	protein-coding	0.025000	0.467662	
mm_148319.1	chr18	83827506	83827706	-	1	NA	NA	NA	258956	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.030000	0.562189	-34(GTGTTTATAAAG,-,0.00),-32(GTTTATAAAGTG,+,0.00)
mm_98281.1	chr11	89060532	89060732	+	1	NA	NA	NA	116	NM_019505	56077	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	0.120000	0.711443	
mm_112510.1	chr13	8885859	8886059	+	1	NA	NA	NA	353	NM_145360	319554	Mm.29847	NM_145360	ENSMUSG00000058258	Idi1	4832416K17Rik	isopentenyl-diphosphate delta isomerase	protein-coding	0.060000	0.606965	
mm_109721.1	chr12	116140874	116141074	+	1	NA	NA	NA	63248	NM_009511	22355	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding	0.005000	0.442786	
mm_27358.1	chr3	50417929	50418129	-	1	NA	NA	NA	25584	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.263682	
mm_68691.1	chr7	119479155	119479355	-	1	NA	NA	NA	7	NM_009470	22242	Mm.10826	NM_009470	ENSMUSG00000030963	Umod	THP|Urehd1|urehr4	uromodulin	protein-coding	0.000000	0.472637	
mm_114666.1	chr13	78202276	78202476	+	1	NA	NA	NA	-3503	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.035000	0.457711	-86(TTTTTTAAAGAG,+,0.00)
mm_108450.1	chr12	82543502	82543702	+	1	NA	NA	NA	-73323	NM_001310478	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0.010000	0.457711	
mm_99192.1	chr11	100969779	100969979	+	1	NA	NA	NA	738	NM_008986	19285	Mm.21864	NM_008986	ENSMUSG00000004044	Ptrf	2310075E07Rik|AW546441|Cav-p60|Cavin	polymerase I and transcript release factor	protein-coding	0.065000	0.706468	
mm_153538.1	chr19	41933198	41933398	-	1	NA	NA	NA	16	NM_001164561	66583	Mm.289086	NM_025644	ENSMUSG00000034321	Exosc1	2610035C18Rik|2610104C07Rik|2610312F07Rik|AI447561	exosome component 1	protein-coding	0.070000	0.597015	
mm_124579.1	chr14	124625698	124625898	-	1	NA	NA	NA	51329	NM_207667	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.000000	0.393035	
mm_37033.1	chr4	115134013	115134213	-	1	NA	NA	NA	-136	NM_001003947	81906	Mm.215544	NM_001003947	ENSMUSG00000047155	Cyp4x1	A230025G20|CYPIVX1|CYP_a|Cyp4a28-ps	cytochrome P450, family 4, subfamily x, polypeptide 1	protein-coding	0.030000	0.606965	
mm_60620.1	chr7	44602496	44602696	+	1	NA	NA	NA	11710	NM_001290682	16504	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.035000	0.572139	
mm_165927.1	chr4	63344378	63344578	+	1	NA	NA	NA	-78	NM_008768	18405	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding	0.010000	0.527363	
mm_168093.1	chr10	128565656	128565856	-	1	NA	NA	NA	178	NM_011119	18813	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	0.070000	0.611940	
mm_149451.1	chr19	11491938	11492138	+	1	NA	NA	NA	0	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.010000	0.457711	
mm_126024.1	chr15	76695676	76695876	+	1	NA	NA	NA	-950	NM_182805	76282	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	0.000000	0.582090	
mm_43973.1	chr5	146109109	146109309	+	1	NA	NA	NA	29951	NM_001105160	100041449	Mm.301900	NM_001105160	ENSMUSG00000061292	Cyp3a59	ENSMUSG00000061292	cytochrome P450, family 3, subfamily a, polypeptide 59	protein-coding	0.000000	0.388060	
mm_102740.1	chr11	67252500	67252700	-	1	NA	NA	NA	14788	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.010000	0.442786	
mm_4027.1	chr1	165767183	165767383	+	1	NA	NA	NA	3503	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.000000	0.492537	
mm_29811.1	chr3	127876626	127876826	-	1	NA	NA	NA	19597	NM_027482	70617	Mm.317049	NM_027482	ENSMUSG00000050549	5730508B09Rik	2700063A17Rik|C80506	RIKEN cDNA 5730508B09 gene	protein-coding	0.005000	0.378109	-19(CCTTTTAAATGT,+,0.00)
mm_4361.1	chr1	171919388	171919588	+	1	NA	NA	NA	1951	NM_030710	30925	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	0.005000	0.537313	
mm_8625.1	chr1	156270666	156270866	-	1	NA	NA	NA	32582	NM_001134741	214575	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	0.020000	0.417910	
mm_157168.1	chrX	9467893	9468093	-	1	NA	NA	NA	1331	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.025000	0.417910	-49(CACTTTAAGAGC,-,0.00),31(CCTTTTAAATTA,+,0.00)
mm_100958.1	chr11	6635450	6635650	-	1	NA	NA	NA	3099	NM_011709	22373	Mm.268094	NM_011709	ENSMUSG00000000381	Wap	-	whey acidic protein	protein-coding	0.010000	0.512438	
mm_107057.1	chr12	16653672	16653872	+	1	NA	NA	NA	302	NM_008747	18217	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT2R|NTRL	neurotensin receptor 2	protein-coding	0.095000	0.651741	
mm_70878.1	chr8	25118161	25118361	+	1	NA	NA	NA	-16450	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.025000	0.522388	
mm_62374.1	chr7	100706546	100706746	+	1	NA	NA	NA	-56	NM_178764	319604	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0.075000	0.661692	
mm_141466.1	chr17	30597780	30597980	-	1	NA	NA	NA	14779	NM_025374	109801	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding	0.030000	0.512438	
mm_113637.1	chr13	42052020	42052220	+	1	NA	NA	NA	99	NM_007772	110521	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.125000	0.731343	
mm_27654.1	chr3	63964563	63964763	-	1	NA	NA	NA	70	NM_001331067	11416	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	0.095000	0.572139	
mm_64455.1	chr7	142660239	142660439	+	1	NA	NA	NA	659	NR_002855	111975	Mm.440180	NR_002855	ENSMUSG00000086266	Igf2os	Igf2as|Peg8	insulin-like growth factor 2, opposite strand	ncRNA	0.040000	0.522388	
mm_150092.1	chr19	29454312	29454512	+	1	NA	NA	NA	43493	NM_021396	58205	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.025000	0.502488	
mm_106814.1	chr12	7977653	7977853	+	1	NA	NA	NA	76	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.045000	0.636816	
mm_59874.1	chr7	30280087	30280287	+	1	NA	NA	NA	93	NR_144498	108167416	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	0.100000	0.686567	
mm_158427.1	chrX	139822317	139822517	-	1	NA	NA	NA	21609	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.010000	0.383085	
mm_103146.1	chr11	70255238	70255438	-	1	NA	NA	NA	32	NM_001331118	11684	Mm.12286	NM_007440	ENSMUSG00000000320	Alox12	9930022G08Rik|Alox12p|P-12LO	arachidonate 12-lipoxygenase	protein-coding	0.060000	0.611940	-34(CTTTTTAAAGTT,+,0.00)
mm_41769.1	chr5	103501363	103501563	+	1	NA	NA	NA	76271	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.015000	0.457711	
mm_73110.1	chr8	94667005	94667205	+	1	NA	NA	NA	14	NM_024269	107566	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0.055000	0.611940	
mm_142201.1	chr17	36958446	36958646	-	1	NA	NA	NA	-46	NM_029602	76416	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	0.105000	0.606965	
mm_73428.1	chr8	106135405	106135605	+	1	NA	NA	NA	105	NR_040346	69771	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.030000	0.542289	
mm_6527.1	chr1	74600503	74600703	-	1	NA	NA	NA	794	NM_021313	57751	Mm.280920	NM_021313	ENSMUSG00000026171	Rnf25	0610009H16Rik|AO7	ring finger protein 25	protein-coding	0.010000	0.407960	
mm_35681.1	chr4	43668748	43668948	-	1	NA	NA	NA	11	NM_175517	242408	Mm.440423	NM_175517	ENSMUSG00000043633	Fam221b	4930412F15Rik	family with sequence similarity 221, member B	protein-coding	0.030000	0.557214	
mm_160327.1	chr8	3690776	3690976	-	1	NA	NA	NA	-15	NM_001253746	14128	Mm.1233	NM_013517	ENSMUSG00000005540	Fcer2a	CD23|Fce2|Fcer2|Ly-42	Fc receptor, IgE, low affinity II, alpha polypeptide	protein-coding	0.010000	0.477612	
mm_114541.1	chr13	73763622	73763822	+	1	NA	NA	NA	25	NM_011390	20499	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.130000	0.726368	
mm_55257.1	chr6	53068636	53068836	-	1	NA	NA	NA	-112	NM_173406	231986	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.130000	0.810945	
mm_1763.1	chr1	75546432	75546632	+	1	NA	NA	NA	266	NM_009208	20536	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	0.125000	0.751244	
mm_2770.1	chr1	130717432	130717632	+	1	NA	NA	NA	205	NM_178691	226418	Mm.106553	NM_178691	ENSMUSG00000046404	Yod1	6330564D18Rik|9930028C20Rik|Hshin7	YOD1 deubiquitinase	protein-coding	0.090000	0.716418	
mm_105331.1	chr11	102945934	102946134	-	1	NA	NA	NA	427	NM_011795	23829	Mm.57154	NM_011795	ENSMUSG00000045532	C1ql1	C1qrf|CRF|CTRP14|gliacolin	complement component 1, q subcomponent-like 1	protein-coding	0.080000	0.592040	
mm_89506.1	chr10	94083762	94083962	+	1	NA	NA	NA	47861	NM_053072	13998	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	0.005000	0.363184	
mm_28406.1	chr3	90248670	90248870	-	1	NA	NA	NA	578	NM_013901	30791	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0.035000	0.512438	
mm_91689.1	chr10	43996250	43996450	-	1	NA	NA	NA	8496	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.020000	0.432836	
mm_165062.1	chr19	42202008	42202208	-	1	NA	NA	NA	144	NM_018780	54612	Mm.470071	NM_018780	ENSMUSG00000018822	Sfrp5	AI605071|SARP3	secreted frizzled-related sequence protein 5	protein-coding	0.100000	0.711443	
mm_23337.1	chr3	54692688	54692888	+	1	NA	NA	NA	-317	NM_019995	56790	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0.090000	0.641791	
mm_60708.1	chr7	45225579	45225779	+	1	NA	NA	NA	9926	NM_001285498	21677	Mm.3019	NM_011565	ENSMUSG00000030796	Tead2	ETF|Etdf|TEAD-2|TEF-4|TEF4	TEA domain family member 2	protein-coding	0.045000	0.616915	
mm_144734.1	chr18	35562130	35562330	+	1	NA	NA	NA	72	NM_010771	17184	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0.090000	0.656716	
mm_42909.1	chr5	122525353	122525553	+	1	NA	NA	NA	-23228	NR_027838	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.030000	0.592040	-39(GACTTTTAAAGA,-,0.00),-38(ACTTTTAAAGAG,+,0.00)
mm_18733.1	chr2	72980804	72981004	-	1	NA	NA	NA	-458	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.080000	0.721393	
mm_95693.1	chr11	54314934	54315134	+	1	NA	NA	NA	131	NM_001033599	216739	Mm.267478	NM_144823	ENSMUSG00000020333	Acsl6	A330035H04Rik|AW050338|Facl6|LACS|Lacsl|mKIAA0837	acyl-CoA synthetase long-chain family member 6	protein-coding	0.010000	0.562189	
mm_45792.1	chr5	87535066	87535266	-	1	NA	NA	NA	3029	NM_019878	56362	Mm.23502	NM_019878	ENSMUSG00000029269	Sult1b1	ST1B1|St2b2	sulfotransferase family 1B, member 1	protein-coding	0.015000	0.402985	
mm_107228.1	chr12	26476958	26477158	+	1	NA	NA	NA	7843	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.015000	0.552239	
mm_32049.1	chr4	97581694	97581894	+	1	NA	NA	NA	-149	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.000000	0.432836	
mm_81496.1	chr9	110032056	110032256	+	1	NA	NA	NA	-19865	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.005000	0.432836	
mm_167437.1	chr8	119975095	119975295	+	1	NA	NA	NA	-17243	NM_030209	78892	Mm.264680	NM_030209	ENSMUSG00000031825	Crispld2	1810049K24Rik|Lcrisp2|Lgl1|coffeecrisp	cysteine-rich secretory protein LCCL domain containing 2	protein-coding	0.000000	0.512438	
mm_17097.1	chr2	23069177	23069377	-	1	NA	NA	NA	205	NM_001102438	74159	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.050000	0.587065	
mm_51231.1	chr6	71374430	71374630	+	1	NA	NA	NA	1103	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.030000	0.557214	
mm_104896.1	chr11	99598044	99598244	-	1	NA	NA	NA	-38	NM_029351	75586	Mm.75707	NM_029351	ENSMUSG00000049809	Krtap9-3	2310040M23Rik	keratin associated protein 9-3	protein-coding	0.010000	0.442786	5(GATTATAAAAGG,-,0.00)
mm_127406.1	chr15	101246480	101246680	+	1	NA	NA	NA	-20266	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.125000	0.731343	
mm_25488.1	chr3	109340254	109340454	+	1	NA	NA	NA	-329	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.035000	0.557214	
mm_79501.1	chr9	57175162	57175362	+	1	NA	NA	NA	-13	NR_033784	67319	Mm.234187	NR_033784	ENSMUSG00000100282	1700041C23Rik	-	RIKEN cDNA 1700041C23 gene	ncRNA	0.000000	0.373134	
mm_24968.1	chr3	96727593	96727793	+	1	NA	NA	NA	82	NM_026406	67845	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.145000	0.786070	
mm_83232.1	chr9	42398577	42398777	-	1	NA	NA	NA	1252	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.010000	0.432836	
mm_75161.1	chr8	36568630	36568830	-	1	NA	NA	NA	45213	NM_015802	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.005000	0.368159	
mm_92963.1	chr10	85993418	85993618	-	1	NA	NA	NA	18342	NM_177772	270757	Mm.107214	NM_177772	ENSMUSG00000050108	Bpifc	4732454E24|Bpil2	BPI fold containing family C	protein-coding	0.015000	0.507463	
mm_133309.1	chr16	77601508	77601708	+	1	NA	NA	NA	1951	NR_029728	387246		NR_029728	ENSMUSG00000065557	Mirlet7c-1	Mirnlet7c|Mirnlet7c-1|let-7c-1	microRNA let7c-1	ncRNA	0.005000	0.492537	
mm_158136.1	chrX	103186486	103186686	-	1	NA	NA	NA	78	NM_008671	17954	Mm.388694	NM_008671	ENSMUSG00000082229	Nap1l2	Bpx	nucleosome assembly protein 1-like 2	protein-coding	0.040000	0.567164	
mm_163646.1	chr13	63256668	63256868	+	1	NA	NA	NA	16739	NR_110521	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.020000	0.512438	
mm_43265.1	chr5	130369312	130369512	+	1	NA	NA	NA	-46	NM_181045	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.040000	0.597015	
mm_160591.1	chr9	70453655	70453855	-	1	NA	NA	NA	-32201	NM_007630	12442	Mm.22592	NM_007630	ENSMUSG00000032218	Ccnb2	CycB2	cyclin B2	protein-coding	0.005000	0.492537	
mm_133113.1	chr16	65533889	65534089	+	1	NA	NA	NA	13360	NM_008849	18736	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.015000	0.407960	
mm_165196.1	chr2	32386976	32387176	+	1	NA	NA	NA	663	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.025000	0.512438	
mm_104512.1	chr11	96005812	96006012	-	1	NA	NA	NA	32	NM_009951	140486	Mm.294769	NM_009951	ENSMUSG00000013415	Igf2bp1	AL024068|AW549074|CRD-BP|Crdbp|D030026A21Rik|D11Moh40e|D11Moh45|IMP-1|IMP1|Neilsen|ZBP-1|Zbp1|mir-3063	insulin-like growth factor 2 mRNA binding protein 1	protein-coding	0.105000	0.606965	
mm_98085.1	chr11	86579065	86579265	+	1	NA	NA	NA	4993	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.035000	0.507463	
mm_13804.1	chr2	119039104	119039304	+	1	NA	NA	NA	4414	NM_173450	271842	Mm.33617	NM_173450	ENSMUSG00000027324	Rpusd2	4921503C21Rik|9630001E10|BB231107	RNA pseudouridylate synthase domain containing 2	protein-coding	0.010000	0.338308	
mm_347.1	chr1	31095004	31095204	+	1	NA	NA	NA	1350	NR_136907	102634473	Mm.484482	NR_136907	ENSMUSG00000100371	Gm29669	-	predicted gene 29669	ncRNA	0.010000	0.412935	
mm_82086.1	chr9	123040366	123040566	+	1	NA	NA	NA	5725	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.030000	0.532338	
mm_65562.1	chr7	27168603	27168803	-	1	NA	NA	NA	-1901	NM_053208	112406	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0.010000	0.636816	
mm_81347.1	chr9	108567391	108567591	+	1	NA	NA	NA	-149	NM_023247	66706	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	0.085000	0.646766	
mm_1567.1	chr1	74236439	74236639	+	1	NA	NA	NA	-11	NM_029711	76709	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.145000	0.751244	
mm_25191.1	chr3	103575147	103575347	+	1	NA	NA	NA	-35	NM_001276679	54524	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	0.080000	0.701493	
mm_124691.1	chr15	6435423	6435623	+	1	NA	NA	NA	-9810	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.015000	0.507463	
mm_66331.1	chr7	42738890	42739090	-	1	NA	NA	NA	-46272	NM_001008427	434179	Mm.284947	NM_001008427	ENSMUSG00000069727	Zfp975	EG434179|Gm5595|mszf88	zinc finger protein 975	protein-coding	0.020000	0.542289	
mm_31571.1	chr4	57594810	57595010	+	1	NA	NA	NA	26662	NM_172868	242481	Mm.331630	NM_172868	ENSMUSG00000090053	Palm2	53-H12|B130066I24|R75368|pEN70	paralemmin 2	protein-coding	0.000000	0.407960	
mm_81210.1	chr9	107580627	107580827	+	1	NA	NA	NA	58	NM_019750	56441	Mm.10305	NM_019750	ENSMUSG00000079334	Nat6	AI225910|Fus2	N-acetyltransferase 6	protein-coding	0.050000	0.597015	
mm_18335.1	chr2	57367555	57367755	-	1	NA	NA	NA	129273	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.010000	0.328358	
mm_77041.1	chr8	109575390	109575590	-	1	NA	NA	NA	3682	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.040000	0.552239	
mm_74709.1	chr8	17186812	17187012	-	1	NA	NA	NA	348473	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.000000	0.338308	
mm_141221.1	chr17	27242553	27242753	-	1	NA	NA	NA	5413	NR_131118	319720	Mm.394996	NR_131118		9630028I04Rik	-	RIKEN cDNA 9630028I04 gene	ncRNA	0.010000	0.552239	
mm_35831.1	chr4	48039649	48039849	-	1	NA	NA	NA	-5556	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.000000	0.417910	
mm_13166.1	chr2	92609408	92609608	+	1	NA	NA	NA	9801	NM_023850	76969	Mm.38021	NM_023850	ENSMUSG00000027221	Chst1	2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KSGAL6ST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding	0.000000	0.512438	-49(ACCTTTATAGAC,+,0.00),-47(CTTTATAGACAG,+,0.00)
mm_172996.1	chrM	1396	1596	+	1	NA	NA	NA	NA	NA									0.010000	0.313433	66(CCTTTAATAGTG,+,0.00)
mm_67394.1	chr7	79848108	79848308	-	1	NA	NA	NA	-5856	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.090000	0.696517	
mm_16105.1	chr2	169632937	169633137	+	1	NA	NA	NA	-609	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.030000	0.512438	
mm_20754.1	chr2	140659602	140659802	-	1	NA	NA	NA	11774	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.010000	0.412935	
mm_108920.1	chr12	100778995	100779195	+	1	NA	NA	NA	-28	NM_145448	217830	Mm.218590	NM_145448	ENSMUSG00000021185	9030617O03Rik	-	RIKEN cDNA 9030617O03 gene	protein-coding	0.015000	0.616915	
mm_67307.1	chr7	79386862	79387062	-	1	NA	NA	NA	65	NM_020599	19771	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	0.020000	0.611940	
mm_46351.1	chr5	102911169	102911369	-	1	NA	NA	NA	66262	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.015000	0.522388	
mm_80077.1	chr9	69995322	69995522	+	1	NA	NA	NA	5956	NM_001008238	12175	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	0.000000	0.497512	
mm_166599.1	chr6	67532437	67532637	-	1	NA	NA	NA	3285	NM_020047	56753	Mm.439913	NM_020047	ENSMUSG00000051397	Tacstd2	C80403|EGP-1|GA733-1|Ly97|TROP2	tumor-associated calcium signal transducer 2	protein-coding	0.005000	0.482587	
mm_94369.1	chr11	5058029	5058229	+	1	NA	NA	NA	1	NM_145216	75668	Mm.374836	NM_145216	ENSMUSG00000034209	Rasl10a	2210403B10Rik|AI852688	RAS-like, family 10, member A	protein-coding	0.135000	0.741294	
mm_109877.1	chr12	4918045	4918245	-	1	NA	NA	NA	792	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.035000	0.527363	
mm_86917.1	chr10	23851340	23851540	+	1	NA	NA	NA	-22	NM_011979	26464	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	0.015000	0.437811	-86(CCTTTTAGAGAT,+,0.00)
mm_113952.1	chr13	51100405	51100605	+	1	NA	NA	NA	222	NR_029463	77428	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0.060000	0.582090	
mm_100143.1	chr11	115992915	115993115	+	1	NA	NA	NA	18290	NM_133663	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.020000	0.597015	
mm_43780.1	chr5	142365633	142365833	+	1	NA	NA	NA	-35764	NM_199068	17425	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf	forkhead box K1	protein-coding	0.020000	0.492537	
mm_36808.1	chr4	103173528	103173728	-	1	NA	NA	NA	41256	NM_177732	242585	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.020000	0.467662	
mm_96243.1	chr11	62560394	62560594	+	1	NA	NA	NA	8763	NM_001313984	22187	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.050000	0.482587	
mm_87620.1	chr10	57794600	57794800	+	1	NA	NA	NA	156	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.075000	0.706468	
mm_142532.1	chr17	46442113	46442313	-	1	NA	NA	NA	-3736	NM_144856	108114	Mm.387538	NM_144856	ENSMUSG00000067144	Slc22a7	NLT|OAT2	solute carrier family 22 (organic anion transporter), member 7	protein-coding	0.045000	0.547264	
mm_126176.1	chr15	78597017	78597217	+	1	NA	NA	NA	70	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.015000	0.631841	
mm_91751.1	chr10	49788656	49788856	-	1	NA	NA	NA	-2	NM_001111268	14806	Mm.332838	NM_010349	ENSMUSG00000056073	Grik2	AW124492|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.115000	0.711443	-94(CGCCTTTAAAGC,-,0.00),-93(GCCTTTAAAGCA,+,0.00),-92(CCTTTAAAGCAA,+,0.00)
mm_120249.1	chr14	62997972	62998172	+	1	NA	NA	NA	-5	NM_001039125	654465	Mm.424929	NM_001039125	ENSMUSG00000075573	Defb47	Defb41|EG654465	defensin beta 47	protein-coding	0.030000	0.537313	
mm_157883.1	chrX	75843068	75843268	-	1	NA	NA	NA	-105	NM_001346520	102866	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	0.015000	0.412935	-33(TGGTTTTAAAAG,-,0.00),-31(GTTTTAAAAGTG,+,0.00)
mm_136113.1	chr16	85550065	85550265	-	1	NA	NA	NA	208	NM_144853	224405	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding	0.055000	0.661692	
mm_139070.1	chr17	46650234	46650434	+	1	NA	NA	NA	-4	NM_025611	66515	Mm.329078	NM_025611	ENSMUSG00000038545	Cul7	2510004L20Rik|AA409809|C230011P08Rik|p185|p193	cullin 7	protein-coding	0.060000	0.626866	
mm_89404.1	chr10	90576681	90576881	+	1	NA	NA	NA	90	NM_181398	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.020000	0.472637	
mm_2068.1	chr1	87620335	87620535	+	1	NA	NA	NA	123	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.015000	0.587065	
mm_5571.1	chr1	39450170	39450370	-	1	NA	NA	NA	28477	NM_018775	54610	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.025000	0.467662	
mm_53726.1	chr6	145075241	145075441	+	1	NA	NA	NA	816	NM_007532	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.030000	0.477612	
mm_22933.1	chr3	31163258	31163458	+	1	NA	NA	NA	13438	NM_008770	18417	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.035000	0.577114	
mm_134667.1	chr16	22260979	22261179	-	1	NA	NA	NA	4926	NM_001330554	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding	0.000000	0.323383	-83(GTTTATAAAAAG,-,0.00)
mm_166532.1	chr6	29914605	29914805	+	1	NA	NA	NA	-2308	NM_001037740	320609	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0.010000	0.447761	
mm_129183.1	chr15	76307124	76307324	-	1	NA	NA	NA	21	NM_153122	75475	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0.050000	0.616915	
mm_157549.1	chrX	51681249	51681449	-	1	NA	NA	NA	253	NM_001077202	50786	Mm.252561	NM_015819	ENSMUSG00000062184	Hs6st2	6OST2	heparan sulfate 6-O-sulfotransferase 2	protein-coding	0.095000	0.706468	
mm_67265.1	chr7	75780268	75780468	-	1	NA	NA	NA	-67970	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.005000	0.447761	
mm_55941.1	chr6	85069341	85069541	-	1	NA	NA	NA	72	NM_177077	75914	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	0.130000	0.751244	
mm_20625.1	chr2	131910600	131910800	-	1	NA	NA	NA	772	NM_001278256	19122	Mm.648	NM_011170	ENSMUSG00000079037	Prnp	AA960666|AI325101|CD230|PrP|PrP<C>|PrPC|PrPSc|Prn-i|Prn-p|Sinc|prP27-30|prP33-35C	prion protein	protein-coding	0.020000	0.363184	
mm_148091.1	chr18	73815342	73815542	-	1	NA	NA	NA	-50	NM_145494	107029	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	0.125000	0.766169	
mm_167048.1	chr7	82335647	82335847	+	1	NA	NA	NA	53	NM_001190374	269959	Mm.65306	NM_001190374	ENSMUSG00000070469	Adamtsl3	9230119C12Rik|C130057K09|mKIAA1233	ADAMTS-like 3	protein-coding	0.160000	0.756219	
mm_54125.1	chr6	18443755	18443955	-	1	NA	NA	NA	70970	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding	0.000000	0.333333	
mm_93438.1	chr10	109779982	109780182	-	1	NA	NA	NA	220137	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.015000	0.313433	
mm_71964.1	chr8	70529451	70529651	+	1	NA	NA	NA	1705	NM_001199631	14232	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|Fkbp38	FK506 binding protein 8	protein-coding	0.015000	0.641791	
mm_74612.1	chr8	12573185	12573385	-	1	NA	NA	NA	236	NM_024279	78634	Mm.116871	NM_024279	ENSMUSG00000010435	Spaca7	1700094C09Rik	sperm acrosome associated 7	protein-coding	0.035000	0.492537	
mm_34759.1	chr4	152338886	152339086	+	1	NA	NA	NA	335	NM_001081376	269610	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding	0.120000	0.771144	
mm_160306.1	chr7	140667345	140667545	+	1	NA	NA	NA	156	NM_146961	258963	Mm.377773	NM_146961	ENSMUSG00000059136	Olfr539	MOR253-4	olfactory receptor 539	protein-coding	0.005000	0.482587	-18(GCTCTAATGGGC,+,0.00)
mm_173093.1	chrX	151215587	151215787	-	1	NA	NA	NA	17609	NM_001271678	279561	Mm.441474	NM_001271678	ENSMUSG00000041245	Wnk3	Prkwnk3|Wnk3-ps	WNK lysine deficient protein kinase 3	protein-coding	0.030000	0.417910	
mm_66449.1	chr7	44869456	44869656	-	1	NA	NA	NA	232	NM_133949	84113	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0.185000	0.835821	
mm_46108.1	chr5	92348115	92348315	-	1	NA	NA	NA	674	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.035000	0.537313	
mm_32438.1	chr4	107253168	107253368	+	1	NA	NA	NA	265	NM_029985	77809	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	0.100000	0.751244	
mm_138988.1	chr17	45506741	45506941	+	1	NA	NA	NA	0	NM_198608	224805	Mm.329063	NM_198608	ENSMUSG00000023938	Aars2	Aarsl|AlaRS|Gm89	alanyl-tRNA synthetase 2, mitochondrial	protein-coding	0.090000	0.651741	
mm_167602.1	chr9	50905465	50905665	+	1	NA	NA	NA	48641	NM_001286553	73699	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0.005000	0.368159	
mm_22177.1	chr2	173215685	173215885	-	1	NA	NA	NA	3137	NM_021394	58203	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.025000	0.522388	
mm_163920.1	chr14	44256090	44256290	+	1	NA	NA	NA	-42953	NR_073363	74328	Mm.439150	NR_073363		1700047E10Rik	-	RIKEN cDNA 1700047E10 gene	ncRNA	0.010000	0.388060	
mm_122794.1	chr14	54438637	54438837	-	1	NA	NA	NA	7139	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.025000	0.547264	
mm_114877.1	chr13	94173911	94174111	+	1	NA	NA	NA	111270	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.080000	0.716418	
mm_100431.1	chr11	119465032	119465232	+	1	NA	NA	NA	-26215	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.020000	0.462687	
mm_40978.1	chr5	77036982	77037182	+	1	NA	NA	NA	-18219	NR_077218	68246	Mm.319633	NR_077218	ENSMUSG00000086632	1700112J05Rik	1700110A09Rik	RIKEN cDNA 1700112J05 gene	ncRNA	0.050000	0.616915	
mm_73806.1	chr8	117330339	117330539	+	1	NA	NA	NA	-18731	NM_028941	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.000000	0.467662	
mm_82230.1	chr9	3031818	3032018	-	1	NA	NA	NA	6825	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.378109	
mm_172933.1	chr9	7751597	7751797	+	1	NA	NA	NA	-12380	NM_133739	71929	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0.040000	0.512438	
mm_40834.1	chr5	72914460	72914660	+	1	NA	NA	NA	198	NM_153567	75991	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0.130000	0.721393	
mm_134193.1	chr16	10992555	10992755	-	1	NA	NA	NA	466	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.060000	0.487562	
mm_63174.1	chr7	125368878	125369078	+	1	NA	NA	NA	117	NM_001145759	75861	Mm.349600	NM_001145759		4930571K23Rik	AI428146	RIKEN cDNA 4930571K23 gene	protein-coding	0.010000	0.567164	
mm_136687.1	chr17	6827975	6828175	+	1	NA	NA	NA	-45295	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.110000	0.676617	
mm_39568.1	chr5	23418530	23418730	+	1	NA	NA	NA	15723	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.060000	0.582090	
mm_40692.1	chr5	65764016	65764216	+	1	NA	NA	NA	595	NM_001024917	333789	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.180000	0.776119	
mm_37915.1	chr4	132783387	132783587	-	1	NA	NA	NA	12877	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.020000	0.477612	
mm_14703.1	chr2	142631901	142632101	+	1	NA	NA	NA	269463	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.005000	0.462687	
mm_18981.1	chr2	76851587	76851787	-	1	NA	NA	NA	130860	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.035000	0.442786	24(GAGTATAAAGAG,-,0.00)
mm_118100.1	chr13	103920212	103920412	-	1	NA	NA	NA	274	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.075000	0.641791	
mm_119713.1	chr14	53875874	53876074	+	1	NA	NA	NA	377955	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.532338	
mm_129413.1	chr15	78336295	78336495	-	1	NA	NA	NA	10405	NM_007780	12983	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.010000	0.557214	
mm_71584.1	chr8	54779500	54779700	+	1	NA	NA	NA	166	NM_001253754	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.035000	0.621891	
mm_165078.1	chr19	46348973	46349173	+	1	NA	NA	NA	-85	NR_040418	75579	Mm.436708	NR_040418		2310034G01Rik	-	RIKEN cDNA 2310034G01 gene	ncRNA	0.165000	0.761194	
mm_35124.1	chr4	11156117	11156317	-	1	NA	NA	NA	-224	NM_001199105	60599	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.105000	0.726368	
mm_32675.1	chr4	115775503	115775703	+	1	NA	NA	NA	5431	NM_029196	75173	Mm.331798	NM_029196	ENSMUSG00000044556	Tex38	4930544O15Rik|Theg4	testis expressed 38	protein-coding	0.005000	0.318408	-98(ACCTTTAAAGAC,+,0.00)
mm_64815.1	chr7	7121383	7121583	-	1	NA	NA	NA	-7	NM_172738	232853	Mm.23838	NM_172738	ENSMUSG00000062116	Zfp954	5730403M16Rik|8030437F07|AA123315	zinc finger protein 954	protein-coding	0.045000	0.522388	
mm_117931.1	chr13	99434269	99434469	-	1	NA	NA	NA	-21543	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.442786	
mm_149050.1	chr19	8837479	8837679	+	1	NA	NA	NA	112	NM_001136064	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.105000	0.701493	
mm_98889.1	chr11	97838013	97838213	+	1	NA	NA	NA	-2667	NM_001080935	68127	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0.010000	0.547264	-14(CCCTAGAAATGG,-,0.00)
mm_93572.1	chr10	116581393	116581593	-	1	NA	NA	NA	18	NM_001037848	72068	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.130000	0.661692	
mm_9367.1	chr1	172200393	172200593	-	1	NA	NA	NA	6311	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.010000	0.542289	
mm_32828.1	chr4	117564523	117564723	+	1	NA	NA	NA	14258	NM_080469	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.035000	0.457711	
mm_66735.1	chr7	46667331	46667531	-	1	NA	NA	NA	-54	NM_001276372	21990	Mm.248684	NM_009414	ENSMUSG00000040046	Tph1	Tph	tryptophan hydroxylase 1	protein-coding	0.070000	0.621891	21(TCCTATAAGAGG,-,0.00),56(CTCTTTAAACTC,+,0.00)
mm_34818.1	chr4	154960823	154961023	+	1	NA	NA	NA	0	NM_010419	15208	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hairy and enhancer of split 5 (Drosophila)	protein-coding	0.125000	0.736318	-34(GCCTATATAGGG,+,0.00),-34(GCCTATATAGGG,-,0.00)
mm_12887.1	chr2	84743795	84743995	+	1	NA	NA	NA	-2717	NR_029544	387149		NR_029544	ENSMUSG00000065484	Mir130a	Mirn130|Mirn130a|mir-130a	microRNA 130a	ncRNA	0.040000	0.636816	
mm_152678.1	chr19	15924872	15925072	-	1	NA	NA	NA	87	NM_177420	107272	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0.065000	0.631841	
mm_135946.1	chr16	74411498	74411698	-	1	NA	NA	NA	-686	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.060000	0.651741	
mm_63042.1	chr7	121089842	121090042	+	1	NA	NA	NA	6504	NM_139310	246190	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0.035000	0.597015	
mm_19556.1	chr2	98666778	98666978	-	1	NA	NA	NA	1199221	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.035000	0.363184	
mm_30566.1	chr4	3790219	3790419	+	1	NA	NA	NA	45336	NM_026147	67427	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.005000	0.353234	31(GCTTTAAAACAC,+,0.00)
mm_134522.1	chr16	19236135	19236335	-	1	NA	NA	NA	50506	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.000000	0.333333	
mm_121013.1	chr14	79535547	79535747	+	1	NA	NA	NA	19973	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.025000	0.447761	1(CACTCTTAAAAG,-,0.00)
mm_88812.1	chr10	80797860	80798060	+	1	NA	NA	NA	666	NM_023900	78670	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.115000	0.716418	
mm_115402.1	chr13	113981388	113981588	+	1	NA	NA	NA	170104	NR_045836	319803	Mm.386896	NM_177004		A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	0.025000	0.393035	
mm_80745.1	chr9	94945963	94946163	+	1	NA	NA	NA	194234	NR_106116	102465763		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.010000	0.368159	82(GGTTTTATAGGG,-,0.00)
mm_58200.1	chr6	143166983	143167183	-	1	NA	NA	NA	-147	NM_029250	75320	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0.120000	0.736318	
mm_72450.1	chr8	83165588	83165788	+	1	NA	NA	NA	336	NM_027758	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.140000	0.711443	
mm_158705.1	chrX	162159625	162159825	-	1	NA	NA	NA	-284	NM_001290526	195727	Mm.336313	NM_001081052	ENSMUSG00000059493	Nhs	Gm389|Gm48|Nhs1|Xcat	Nance-Horan syndrome (human)	protein-coding	0.070000	0.582090	-34(CCATTTATATAG,+,0.00),-32(ATTTATATAGGC,+,0.00)
mm_97370.1	chr11	77685668	77685868	+	1	NA	NA	NA	-371	NM_001024205	68564	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0.030000	0.492537	
mm_31495.1	chr4	53227258	53227458	+	1	NA	NA	NA	-18838	NR_040665	78180	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.005000	0.447761	
mm_81197.1	chr9	107554624	107554824	+	1	NA	NA	NA	141	NM_019713	56289	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0.120000	0.651741	
mm_108136.1	chr12	76104752	76104952	+	1	NA	NA	NA	72407	NM_010157	13983	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0.045000	0.597015	
mm_164265.1	chr15	100819482	100819682	+	1	NA	NA	NA	38328	NM_001347102	59033	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0.010000	0.472637	
mm_1943.1	chr1	86303368	86303568	+	1	NA	NA	NA	247	NM_145222	227327	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.085000	0.696517	
mm_6851.1	chr1	84251224	84251424	-	1	NA	NA	NA	-32363	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.358209	
mm_11875.1	chr2	49451424	49451624	+	1	NA	NA	NA	38	NM_172663	227867	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2 (Drosophila)	protein-coding	0.145000	0.756219	
mm_160082.1	chr7	13329222	13329422	+	1	NA	NA	NA	0	NM_001004762	232889	Mm.223639	NM_001004762	ENSMUSG00000033847	Pla2g4c	D7Ertd445e	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding	0.010000	0.517413	-33(GTCTATAAGAGA,-,0.00)
mm_137230.1	chr17	24351993	24352193	+	1	NA	NA	NA	70	NM_001039581	27410	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	0.105000	0.731343	
mm_105257.1	chr11	102356125	102356325	-	1	NA	NA	NA	9056	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.040000	0.537313	
mm_55468.1	chr6	68736692	68736892	-	1	NA	NA	NA	590382	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.010000	0.437811	
mm_42176.1	chr5	112261728	112261928	+	1	NA	NA	NA	6008	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.005000	0.432836	
mm_102934.1	chr11	69600925	69601125	-	1	NA	NA	NA	4935	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.025000	0.502488	
mm_21836.1	chr2	165792749	165792949	-	1	NA	NA	NA	65324	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.040000	0.547264	
mm_15820.1	chr2	164563228	164563428	+	1	NA	NA	NA	612	NM_026323	67701	Mm.27289	NM_026323	ENSMUSG00000017723	Wfdc2	1600023A02Rik|HE4|WAP5	WAP four-disulfide core domain 2	protein-coding	0.050000	0.616915	
mm_62659.1	chr7	107722819	107723019	+	1	NA	NA	NA	35113	NM_001205227	320635	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	0.015000	0.472637	
mm_29478.1	chr3	115711173	115711373	-	1	NA	NA	NA	3782	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.010000	0.467662	
mm_78600.1	chr9	37488937	37489137	+	1	NA	NA	NA	-284	NM_146222	235184	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	0.060000	0.626866	
mm_32174.1	chr4	100479079	100479279	+	1	NA	NA	NA	312	NM_001033773	381534	Mm.318133	NM_001033773	ENSMUSG00000069733	Ube2u	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding	0.020000	0.477612	
mm_42752.1	chr5	120812579	120812779	+	1	NA	NA	NA	41	NM_001083925	23961	Mm.233471	NM_001083925	ENSMUSG00000029605	Oas1b	Flv|L1|Mmu-L1|Oas1|Oias-2|Oias2|Wnv	2'-5' oligoadenylate synthetase 1B	protein-coding	0.030000	0.542289	
mm_1413.1	chr1	67156799	67156999	+	1	NA	NA	NA	33872	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.015000	0.432836	
mm_170884.1	chr2	22164795	22164995	-	1	NA	NA	NA	-62608	NM_148413	667663	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding	0.065000	0.656716	
mm_108912.1	chr12	100206519	100206719	+	1	NA	NA	NA	6475	NM_001313934	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.015000	0.412935	45(TACCTTATAAGG,-,0.00),47(CCTTATAAGGAA,+,0.00)
mm_150715.1	chr19	43440326	43440526	+	1	NA	NA	NA	-10	NM_031396	83674	Mm.329864	NM_031396	ENSMUSG00000025189	Cnnm1	AI846314|Acdp1|CLP-1	cyclin M1	protein-coding	0.100000	0.721393	
mm_89952.1	chr10	111293176	111293376	+	1	NA	NA	NA	-5403	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.000000	0.308458	22(CTTTATTAAAGC,-,0.00)
mm_153697.1	chr19	44397377	44397577	-	1	NA	NA	NA	10232	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.000000	0.492537	
mm_155692.1	chrX	94234847	94235047	+	1	NA	NA	NA	17	NM_001039061	236904	Mm.115533	NM_153165	ENSMUSG00000043929	Klhl15	6330500C13Rik	kelch-like 15	protein-coding	0.120000	0.736318	
mm_128236.1	chr15	36608399	36608599	-	1	NA	NA	NA	474	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.110000	0.736318	
mm_133180.1	chr16	72563424	72563624	+	1	NA	NA	NA	-99625	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.015000	0.492537	
mm_75642.1	chr8	65018484	65018684	-	1	NA	NA	NA	104	NM_153097	234329	Mm.28010	NM_153097	ENSMUSG00000053490	Trim60	2czf45|Rnf33	tripartite motif-containing 60	protein-coding	0.015000	0.532338	
mm_136753.1	chr17	8565391	8565591	+	1	NA	NA	NA	38690	NM_001290707	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.005000	0.412935	39(GACTATTAAAAC,-,0.00)
mm_147880.1	chr18	64660769	64660969	-	1	NA	NA	NA	131	NM_001001488	54670	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0.105000	0.761194	
mm_87279.1	chr10	41910789	41910989	+	1	NA	NA	NA	23450	NM_001013370	140742	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.015000	0.393035	
mm_5114.1	chr1	6382953	6383153	-	1	NA	NA	NA	23722	NM_001195732	620393	Mm.388992	NM_001195732	ENSMUSG00000087247	Fam150a	EG620393	family with sequence similarity 150, member A	protein-coding	0.135000	0.741294	
mm_148946.1	chr19	7265077	7265277	+	1	NA	NA	NA	-2217	NM_054048	104383	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.010000	0.577114	
mm_147650.1	chr18	60501572	60501772	-	1	NA	NA	NA	311	NM_134133	106878	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.065000	0.621891	
mm_164149.1	chr15	62339423	62339623	-	1	NA	NA	NA	-120072	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.005000	0.398010	
mm_159476.1	chr4	32923393	32923593	-	1	NA	NA	NA	12	NM_080471	140577	Mm.214766	NM_080471	ENSMUSG00000040183	Ankrd6	-	ankyrin repeat domain 6	protein-coding	0.035000	0.552239	
mm_8750.1	chr1	160307310	160307510	-	1	NA	NA	NA	-11438	NR_035448	100316784		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	0.010000	0.542289	
mm_134555.1	chr16	20241169	20241369	-	1	NA	NA	NA	89	NM_198599	208158	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	0.145000	0.741294	
mm_93769.1	chr10	120201467	120201667	-	1	NA	NA	NA	-30	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.110000	0.701493	
mm_90274.1	chr10	122782605	122782805	+	1	NA	NA	NA	103390	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.005000	0.353234	
mm_166923.1	chr7	31035373	31035573	-	1	NA	NA	NA	4844	NR_106017	102465635		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.020000	0.472637	
mm_55386.1	chr6	59016989	59017189	-	1	NA	NA	NA	7413	NM_153574	58909	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0.005000	0.373134	
mm_173120.1	chrX	162703190	162703390	-	1	NA	NA	NA	-57082	NM_009031	245688	Mm.270186	NM_009031	ENSMUSG00000031353	Rbbp7	AA409861|AI173248|AU019541|BB114024|mRbAp46	retinoblastoma binding protein 7	protein-coding	0.000000	0.487562	
mm_109407.1	chr12	110447105	110447305	+	1	NA	NA	NA	26	NM_001135001	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.175000	0.820896	
mm_164902.1	chr18	67470365	67470565	+	1	NA	NA	NA	5616	NM_144867	225655	Mm.221420	NM_144867	ENSMUSG00000024530	Slmo1	A230074A19Rik|BC019561|Prelid3a	slowmo homolog 1 (Drosophila)	protein-coding	0.005000	0.388060	
mm_91323.1	chr10	25200044	25200244	-	1	NA	NA	NA	26	NM_001347460	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.070000	0.681592	
mm_75707.1	chr8	68896594	68896794	-	1	NA	NA	NA	16139	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.025000	0.512438	
mm_28072.1	chr3	84304585	84304785	-	1	NA	NA	NA	90	NM_001271726	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.045000	0.527363	
mm_61047.1	chr7	49778363	49778563	+	1	NA	NA	NA	105	NM_133740	71974	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	0.180000	0.771144	
mm_78363.1	chr9	26879580	26879780	+	1	NA	NA	NA	-18857	NM_001113323	70893	Mm.78118	NM_001113323	ENSMUSG00000031966	Glb1l3	4921509F24Rik	galactosidase, beta 1 like 3	protein-coding	0.005000	0.368159	
mm_26789.1	chr3	9704902	9705102	-	1	NA	NA	NA	-94917	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.025000	0.527363	-77(GACTCTTAAGGG,-,0.00)
mm_95045.1	chr11	32284224	32284424	+	1	NA	NA	NA	649	NM_001083955	110257	Mm.196110	NM_001083955	ENSMUSG00000069917	Hba-a2	-	hemoglobin alpha, adult chain 2	protein-coding	0.035000	0.611940	
mm_97775.1	chr11	82101743	82101943	+	1	NA	NA	NA	-2	NM_011331	20293	Mm.867	NM_011331	ENSMUSG00000035352	Ccl12	MCP-5|Scya12	chemokine (C-C motif) ligand 12	protein-coding	0.005000	0.462687	
mm_106542.1	chr11	120579024	120579224	-	1	NA	NA	NA	2496	NM_133796	192662	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.030000	0.631841	
mm_88325.1	chr10	75566180	75566380	+	1	NA	NA	NA	-2382	NM_001305992	14598	Mm.4559	NM_008116	ENSMUSG00000006345	Ggt1	CD224|GGT|GGT 1|GGT-1|Ggtp|dwg	gamma-glutamyltransferase 1	protein-coding	0.015000	0.532338	
mm_122696.1	chr14	52080096	52080296	-	1	NA	NA	NA	10881	NR_028552	100217457		NR_028552	ENSMUSG00000064871	Snord58b	MBII-199	small nucleolar RNA, C/D box 58B	snoRNA	0.000000	0.333333	40(CCTCTAATACAC,+,0.00),70(GTTTTAAGAGAC,+,0.00)
mm_118986.1	chr14	28504584	28504784	+	1	NA	NA	NA	-789	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.045000	0.582090	
mm_53455.1	chr6	134791390	134791590	+	1	NA	NA	NA	1138	NM_130447	70686	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	0.015000	0.437811	
mm_19984.1	chr2	118545227	118545427	-	1	NA	NA	NA	-740	NR_138603	171543	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.010000	0.522388	7(GGCCAGAAAGGG,-,0.00)
mm_19506.1	chr2	93822459	93822659	-	1	NA	NA	NA	9	NM_010163	14043	Mm.4336	NM_010163	ENSMUSG00000027198	Ext2	AI893565	exostoses (multiple) 2	protein-coding	0.120000	0.706468	
mm_89628.1	chr10	96371166	96371366	+	1	NA	NA	NA	145059	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.030000	0.537313	
mm_16972.1	chr2	17731332	17731532	-	1	NA	NA	NA	-364	NM_028757	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0.045000	0.646766	
mm_63608.1	chr7	128188456	128188656	+	1	NA	NA	NA	14610	NM_001029872	381924	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	0.010000	0.487562	
mm_94880.1	chr11	24319868	24320068	+	1	NA	NA	NA	-161941	NR_045857	71316	Mm.79162	NR_045857	ENSMUSG00000086892	4933430M04Rik	-	RIKEN cDNA 4933430M04 gene	ncRNA	0.005000	0.477612	
mm_45021.1	chr5	38561533	38561733	-	1	NA	NA	NA	-38	NM_011715	22388	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0.175000	0.781095	
mm_52974.1	chr6	123253037	123253237	+	1	NA	NA	NA	-8970	NM_001163161	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.000000	0.402985	33(CCTCTTATAGTG,+,0.00)
mm_34809.1	chr4	154928151	154928351	+	1	NA	NA	NA	-174	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.015000	0.512438	
mm_163651.1	chr13	65052283	65052483	-	1	NA	NA	NA	19325	NM_001083890	238683	Mm.295543	NM_001083890	ENSMUSG00000074849	Spata31d1c	4932441B19Rik|Fam75d1c	spermatogenesis associated 31 subfamily D, member 1C	protein-coding	0.015000	0.497512	
mm_156549.1	chrX	151521076	151521276	+	1	NA	NA	NA	504	NM_001113354	320595	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	0.070000	0.661692	
mm_23885.1	chr3	83031079	83031279	+	1	NA	NA	NA	5026	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.045000	0.577114	
mm_144360.1	chr18	20310648	20310848	+	1	NA	NA	NA	-125	NM_010079	13510	Mm.37953	NM_010079	ENSMUSG00000069441	Dsg1a	DG1|DGI|Dsg1|dsg1-alpha	desmoglein 1 alpha	protein-coding	0.010000	0.487562	65(GTTTTTAGGGTG,+,0.00)
mm_99080.1	chr11	99388955	99389155	+	1	NA	NA	NA	309	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.030000	0.606965	
mm_157478.1	chrX	48147826	48148026	-	1	NA	NA	NA	1490	NM_028773	74131	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	0.025000	0.572139	
mm_41770.1	chr5	103501463	103501663	+	1	NA	NA	NA	76371	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.005000	0.447761	
mm_130840.1	chr15	101869604	101869804	-	1	NA	NA	NA	-86	NM_001003667	406220	Mm.292992	NM_001003667	ENSMUSG00000067594	Krt77	4732484G22Rik|K1emb|Krt239|mK1b	keratin 77	protein-coding	0.015000	0.552239	-32(GTATATATAGGG,+,0.00)
mm_51180.1	chr6	70726729	70726929	+	1	NA	NA	NA	65346	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.522388	
mm_48739.1	chr5	147637398	147637598	-	1	NA	NA	NA	88490	NM_010228	14254	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.010000	0.437811	
mm_90885.1	chr10	9901105	9901305	-	1	NA	NA	NA	-165	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0.150000	0.776119	
mm_96808.1	chr11	69991507	69991707	+	1	NA	NA	NA	237	NM_019749	56486	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0.105000	0.681592	
mm_141437.1	chr17	29549537	29549737	-	1	NA	NA	NA	-44	NM_001162902	71138	Mm.158581	NM_001162901	ENSMUSG00000079580	Tmem217	4933413N12Rik|EG622644	transmembrane protein 217	protein-coding	0.060000	0.646766	
mm_57474.1	chr6	125232960	125233160	-	1	NA	NA	NA	-1200	NM_145391	213233	Mm.296902	NM_145391	ENSMUSG00000038213	Tapbpl	BC017613|TAPBPL-R|Tapbplr	TAP binding protein-like	protein-coding	0.010000	0.537313	
mm_12835.1	chr2	80638750	80638950	+	1	NA	NA	NA	38	NM_027091	69482	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	0.080000	0.597015	
mm_44428.1	chr5	20945440	20945640	-	1	NA	NA	NA	-5449	NR_030699	320770	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.020000	0.502488	69(GCTCATATAGAG,+,0.00)
mm_170546.1	chr19	40125523	40125723	+	1	NA	NA	NA	35944	NM_001167875	107141	Mm.474575	NM_134144	ENSMUSG00000054827	Cyp2c50	AI266900	cytochrome P450, family 2, subfamily c, polypeptide 50	protein-coding	0.040000	0.512438	
mm_32117.1	chr4	99030854	99031054	+	1	NA	NA	NA	0	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.005000	0.373134	-33(GTGTATATAAAG,-,0.00)
mm_108972.1	chr12	102561734	102561934	+	1	NA	NA	NA	6893	NM_007693	12652	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	0.005000	0.606965	
mm_109002.1	chr12	103314775	103314975	+	1	NA	NA	NA	-84	NM_001195726	100504156	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	0.030000	0.572139	
mm_121649.1	chr14	10176559	10176759	-	1	NA	NA	NA	276799	NM_001308286	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.005000	0.417910	
mm_140874.1	chr17	23803921	23804121	-	1	NA	NA	NA	834	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.050000	0.522388	-38(CACTTTTTAAGA,-,0.00)
mm_95688.1	chr11	54304048	54304248	+	1	NA	NA	NA	-56	NM_144823	216739	Mm.267478	NM_144823	ENSMUSG00000020333	Acsl6	A330035H04Rik|AW050338|Facl6|LACS|Lacsl|mKIAA0837	acyl-CoA synthetase long-chain family member 6	protein-coding	0.140000	0.771144	
mm_144804.1	chr18	36281267	36281467	+	1	NA	NA	NA	205	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.175000	0.815920	
mm_7565.1	chr1	124759825	124760025	-	1	NA	NA	NA	675802	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.000000	0.422886	
mm_169779.1	chr16	11143914	11144114	+	1	NA	NA	NA	-9482	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.120000	0.681592	
mm_112871.1	chr13	20852695	20852895	+	1	NA	NA	NA	58682	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.373134	
mm_131115.1	chr16	5374989	5375189	+	1	NA	NA	NA	-119133	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.020000	0.517413	
mm_41255.1	chr5	88825082	88825282	+	1	NA	NA	NA	60169	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.015000	0.422886	
mm_99243.1	chr11	101078342	101078542	+	1	NA	NA	NA	31	NM_010475	15485	Mm.188939	NM_010475	ENSMUSG00000019301	Hsd17b1	17HSDB1|17beta-HSD|E2DH|Hsd17ba	hydroxysteroid (17-beta) dehydrogenase 1	protein-coding	0.035000	0.532338	
mm_111837.1	chr12	107913405	107913605	-	1	NA	NA	NA	89909	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.020000	0.422886	
mm_155339.1	chrX	67458093	67458293	+	1	NA	NA	NA	235369	NM_001126317	382217	Mm.422933	NM_001126317	ENSMUSG00000079578	Gm1140	-	predicted gene 1140	protein-coding	0.000000	0.398010	
mm_51260.1	chr6	72097311	72097511	+	1	NA	NA	NA	-197	NM_001035228	20454	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.080000	0.661692	
mm_40252.1	chr5	38220483	38220683	+	1	NA	NA	NA	101	NM_025281	17089	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	0.130000	0.731343	
mm_133332.1	chr16	78694888	78695088	+	1	NA	NA	NA	-118300	NM_025967	67102	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.005000	0.452736	
mm_70064.1	chr7	142652207	142652407	-	1	NA	NA	NA	2689	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.005000	0.492537	
mm_58275.1	chr6	145434843	145435043	-	1	NA	NA	NA	-18	NM_028742	74071	Mm.441497	NM_028742	ENSMUSG00000054966	Lmntd1	4933403M22Rik|AI482300|Ifltd1|Lmna-rs1|Lmna1|OTTMUSG00000022798	lamin tail domain containing 1	protein-coding	0.010000	0.442786	
mm_4643.1	chr1	180072370	180072570	+	1	NA	NA	NA	111381	NM_001033285	226751	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	0.005000	0.393035	
mm_77113.1	chr8	111081807	111082007	-	1	NA	NA	NA	-199	NM_181549	353287	Mm.135495	NM_181549	ENSMUSG00000033633	Clec18a	Mrcl	C-type lectin domain family 18, member A	protein-coding	0.015000	0.547264	
mm_37925.1	chr4	132843048	132843248	-	1	NA	NA	NA	21	NM_001290725	100336	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	0.105000	0.661692	
mm_138251.1	chr17	34590029	34590229	+	1	NA	NA	NA	323	NM_134116	106512	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.020000	0.646766	
mm_152641.1	chr19	12526332	12526532	-	1	NA	NA	NA	-24436	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.000000	0.333333	
mm_6820.1	chr1	84194142	84194342	-	1	NA	NA	NA	24719	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.487562	
mm_16373.1	chr2	178119075	178119275	+	1	NA	NA	NA	200	NM_001177790	74189	Mm.44413	NM_028806	ENSMUSG00000027525	Phactr3	1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224	phosphatase and actin regulator 3	protein-coding	0.105000	0.766169	
mm_92793.1	chr10	81349134	81349334	-	1	NA	NA	NA	1192	NM_001163165	15353	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0.015000	0.587065	
mm_61727.1	chr7	81859193	81859393	+	1	NA	NA	NA	292	NM_145375	107769	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.130000	0.746269	
mm_157337.1	chrX	36692447	36692647	-	1	NA	NA	NA	-47133	NM_001081956	338351	Mm.116704	NM_001081956	ENSMUSG00000059708	Akap17b	AA407619|AKAP-17B|B230333C21Rik|C230056F04Rik|PRKA17B|Sfrs17b|Srsf17b|Talia	A kinase (PRKA) anchor protein 17B	protein-coding	0.005000	0.447761	
mm_34663.1	chr4	150866995	150867195	+	1	NA	NA	NA	12004	NM_133753	74155	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.030000	0.537313	
mm_104776.1	chr11	98545899	98546099	-	1	NA	NA	NA	32	NM_011771	22780	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.120000	0.656716	36(GTGCTTTAAAGC,-,0.00),38(GCTTTAAAGCGG,+,0.00)
mm_64078.1	chr7	140941428	140941628	+	1	NA	NA	NA	-53	NM_145387	212974	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0.050000	0.592040	
mm_171616.1	chr4	150315397	150315597	-	1	NA	NA	NA	33581	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.085000	0.621891	
mm_154718.1	chrX	9199932	9200132	+	1	NA	NA	NA	59	NM_173414	236285	Mm.245119	NM_173414	ENSMUSG00000047344	Lancl3	6030463G20Rik	LanC lantibiotic synthetase component C-like 3 (bacterial)	protein-coding	0.070000	0.661692	
mm_147005.1	chr18	34481321	34481521	-	1	NA	NA	NA	25402	NM_146084	225358	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	0.005000	0.368159	
mm_15264.1	chr2	155047552	155047752	+	1	NA	NA	NA	26845	NM_016661	269378	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	0.015000	0.532338	
mm_143824.1	chr17	83874595	83874795	-	1	NA	NA	NA	-27905	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.005000	0.522388	
mm_29402.1	chr3	108905263	108905463	-	1	NA	NA	NA	6341	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.010000	0.318408	-47(TTTTTTAAAGTG,+,0.00)
mm_101290.1	chr11	22007096	22007296	-	1	NA	NA	NA	-5545	NM_011023	18423	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.040000	0.606965	
mm_156131.1	chrX	120431647	120431847	+	1	NA	NA	NA	-118521	NM_001281531	624957		NM_001281531	ENSMUSG00000083616	H2afb3	EG624957|H2A.Bbd3|H2afb3-ps	H2A histone family, member B3	protein-coding	0.005000	0.303483	
mm_66740.1	chr7	46672434	46672634	-	1	NA	NA	NA	3	NM_009414	21990	Mm.248684	NM_009414	ENSMUSG00000040046	Tph1	Tph	tryptophan hydroxylase 1	protein-coding	0.035000	0.512438	
mm_98954.1	chr11	98470398	98470598	+	1	NA	NA	NA	23664	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.015000	0.442786	
mm_110815.1	chr12	72375033	72375233	-	1	NA	NA	NA	33921	NM_001286448	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.025000	0.537313	
mm_80596.1	chr9	85845500	85845700	+	1	NA	NA	NA	2748	NM_001164792	21983	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	0.015000	0.402985	
mm_69025.1	chr7	126792374	126792574	-	1	NA	NA	NA	-3	NM_019674	56420	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|Ppx	protein phosphatase 4, catalytic subunit	protein-coding	0.130000	0.686567	
mm_110535.1	chr12	55053389	55053589	-	1	NA	NA	NA	26621	NR_030764	72658	Mm.434380	NM_028314	ENSMUSG00000062198	2700097O09Rik	AW552125	RIKEN cDNA 2700097O09 gene	protein-coding	0.030000	0.452736	-85(CCATTTAAAGCA,+,0.00)
mm_101611.1	chr11	35828152	35828352	-	1	NA	NA	NA	6276	NM_025936	104458	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.000000	0.442786	-7(TTTTTTAAAGGA,+,0.00)
mm_12186.1	chr2	65277242	65277442	+	1	NA	NA	NA	-38716	NM_027225	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.005000	0.417910	
mm_125774.1	chr15	74636262	74636462	+	1	NA	NA	NA	-44	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.005000	0.512438	
mm_89940.1	chr10	111273799	111273999	+	1	NA	NA	NA	-24780	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.005000	0.467662	
mm_79665.1	chr9	59659506	59659706	+	1	NA	NA	NA	3238	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.010000	0.378109	
mm_86726.1	chr10	19062672	19062872	+	1	NA	NA	NA	-47362	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.010000	0.452736	
mm_7988.1	chr1	134234808	134235008	-	1	NA	NA	NA	-52	NM_001291928	11539	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri	adenosine A1 receptor	protein-coding	0.070000	0.641791	-34(CCTCTTTAAAGG,-,0.00),-33(CTCTTTAAAGGC,+,0.00),-33(CTCTTTAAAGGC,-,0.00),-32(TCTTTAAAGGCG,+,0.00)
mm_47848.1	chr5	134456145	134456345	-	1	NA	NA	NA	17	NM_001081465	57080	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.040000	0.577114	
mm_9017.1	chr1	166127790	166127990	-	1	NA	NA	NA	8	NM_001033344	240892	Mm.35315	NM_001033344	ENSMUSG00000026564	Dusp27	C130085G02Rik|Gm209	dual specificity phosphatase 27 (putative)	protein-coding	0.005000	0.522388	
mm_145985.1	chr18	68227942	68228142	+	1	NA	NA	NA	32931	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0.005000	0.472637	
mm_59180.1	chr7	24461389	24461589	+	1	NA	NA	NA	-994	NM_011113	18793	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.025000	0.582090	
mm_88925.1	chr10	81206958	81207158	+	1	NA	NA	NA	-5021	NM_027120	69564	Mm.437211	NM_027120	ENSMUSG00000004939	Nmrk2	2310015C21Rik|Itgb1bp3|Mibp	nicotinamide riboside kinase 2	protein-coding	0.010000	0.422886	
mm_173339.1	chrY	90811737	90811937	+	1	NA	NA	NA	26395	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.000000	0.462687	
mm_78887.1	chr9	44603683	44603883	+	1	NA	NA	NA	-1109	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.040000	0.447761	
mm_51660.1	chr6	86195180	86195380	+	1	NA	NA	NA	53	NM_031199	21802	Mm.137222	NM_031199	ENSMUSG00000029999	Tgfa	wa-1|wa1	transforming growth factor alpha	protein-coding	0.130000	0.761194	
mm_52513.1	chr6	115362217	115362417	+	1	NA	NA	NA	-32	NM_001308354	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.025000	0.572139	0(GCTTTTATATAA,+,0.00),2(TTTTATATAAGG,-,0.00)
mm_114749.1	chr13	84280657	84280857	+	1	NA	NA	NA	58461	NM_175187	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	0.010000	0.258706	
mm_149921.1	chr19	26607368	26607568	+	1	NA	NA	NA	2308	NM_011416	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.150000	0.741294	
mm_3188.1	chr1	135799395	135799595	+	1	NA	NA	NA	-16	NM_001112702	21952	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	0.015000	0.532338	
mm_31061.1	chr4	41314808	41315008	+	1	NA	NA	NA	-7	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.100000	0.646766	
mm_129617.1	chr15	80014184	80014384	-	1	NA	NA	NA	524	NM_011057	18591	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.090000	0.691542	
mm_155597.1	chrX	82327160	82327360	+	1	NA	NA	NA	-621610	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.000000	0.363184	
mm_73799.1	chr8	117274990	117275190	+	1	NA	NA	NA	18071	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.005000	0.527363	
mm_63238.1	chr7	126584842	126585042	+	1	NA	NA	NA	-66	NM_138310	171504	Mm.170665	NM_138310	ENSMUSG00000042759	Apobr	Apob-48r|Apob48r	apolipoprotein B receptor	protein-coding	0.020000	0.592040	
mm_145349.1	chr18	56483268	56483468	+	1	NA	NA	NA	51236	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.000000	0.472637	
mm_96849.1	chr11	70043002	70043202	+	1	NA	NA	NA	-11022	NM_001291131	11889	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.005000	0.552239	-18(CTTTTTAAATGG,+,0.00)
mm_100211.1	chr11	116868290	116868490	+	1	NA	NA	NA	14375	NM_178620	69900	Mm.348004	NM_178620	ENSMUSG00000020818	Mfsd11	2600014M03Rik	major facilitator superfamily domain containing 11	protein-coding	0.005000	0.502488	
mm_7731.1	chr1	130741191	130741391	-	1	NA	NA	NA	9315	NM_177604	212439	Mm.268547	NM_177604	ENSMUSG00000042510	AA986860	E030025M07|Sarg	expressed sequence AA986860	protein-coding	0.020000	0.512438	
mm_99711.1	chr11	106216955	106217155	+	1	NA	NA	NA	129	NM_028074	72047	Mm.41367	NM_028074	ENSMUSG00000020705	Ddx42	1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	protein-coding	0.145000	0.731343	
mm_110344.1	chr12	36156698	36156898	-	1	NA	NA	NA	27	NM_025840	66912	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	0.065000	0.661692	
mm_31624.1	chr4	59197462	59197662	+	1	NA	NA	NA	8012	NM_011673	22234	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.000000	0.323383	
mm_9684.1	chr1	178333546	178333746	-	1	NA	NA	NA	4138	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.005000	0.353234	
mm_83977.1	chr9	57262500	57262700	-	1	NA	NA	NA	-1	NM_028820	74211	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.135000	0.776119	
mm_84067.1	chr9	58201301	58201501	-	1	NA	NA	NA	314	NM_001161535	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.030000	0.537313	
mm_94168.1	chr10	128804264	128804464	-	1	NA	NA	NA	6	NM_178066	73827	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	0.020000	0.597015	
mm_117670.1	chr13	93637470	93637670	-	1	NA	NA	NA	188	NM_016668	12116	Mm.329582	NM_016668	ENSMUSG00000074768	Bhmt	-	betaine-homocysteine methyltransferase	protein-coding	0.025000	0.587065	-28(CTGTATAAAGAG,-,0.00)
mm_73765.1	chr8	115707884	115708084	+	1	NA	NA	NA	-1090	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.050000	0.562189	
mm_100104.1	chr11	115766688	115766888	+	1	NA	NA	NA	1355	NM_028014	71947	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	0.030000	0.477612	
mm_17161.1	chr2	25239760	25239960	-	1	NA	NA	NA	37	NM_026415	67859	Mm.46431	NM_026415	ENSMUSG00000036731	Cysrt1	2310002J15Rik|AV023762	cysteine rich tail 1	protein-coding	0.010000	0.567164	
mm_150831.1	chr19	44746623	44746823	+	1	NA	NA	NA	-10671	NM_011037	18504	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0.135000	0.741294	
mm_137227.1	chr17	24351843	24352043	+	1	NA	NA	NA	-80	NM_013855	27410	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	0.105000	0.686567	
mm_125499.1	chr15	55252343	55252543	+	1	NA	NA	NA	-55307	NM_181277	12818	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.015000	0.482587	
mm_33321.1	chr4	129083793	129083993	+	1	NA	NA	NA	-21637	NM_025452	66260	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.020000	0.587065	
mm_70549.1	chr8	13055932	13056132	+	1	NA	NA	NA	-4876	NM_025834	66901	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.015000	0.527363	
mm_88800.1	chr10	80702198	80702398	+	1	NA	NA	NA	-395	NM_027829	71564	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.045000	0.636816	-33(GGCTAGAAAGGG,-,0.00)
mm_113242.1	chr13	27345585	27345785	+	1	NA	NA	NA	12	NM_001289919	13529	Mm.291450	NM_010088	ENSMUSG00000018259	Prl8a2	D/tPRP|DPRP|Dtprp|Ghd11|mdPRP	prolactin family 8, subfamily a, member 2	protein-coding	0.005000	0.457711	-45(AACTATATAGGG,-,0.00)
mm_14700.1	chr2	142373967	142374167	+	1	NA	NA	NA	527397	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.010000	0.452736	75(ACTTTAAGAGGG,+,0.00)
mm_15046.1	chr2	152847867	152848067	+	1	NA	NA	NA	3	NM_028109	72119	Mm.407737	NM_028109	ENSMUSG00000027469	Tpx2	2610005B21Rik|DIL2|REPP86|p100	TPX2, microtubule-associated	protein-coding	0.065000	0.547264	
mm_171311.1	chr3	95036617	95036817	-	1	NA	NA	NA	5897	NM_001282017	19185	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	0.030000	0.522388	
mm_78023.1	chr9	13751319	13751519	+	1	NA	NA	NA	2238	NR_024025	77116	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.000000	0.323383	
mm_62213.1	chr7	97919858	97920058	+	1	NA	NA	NA	0	NM_177696	233537	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	0.055000	0.577114	
mm_9043.1	chr1	167273425	167273625	-	1	NA	NA	NA	11602	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.030000	0.512438	
mm_97201.1	chr11	75596056	75596256	+	1	NA	NA	NA	4075	NR_110477	654359	Mm.439961	NR_110477		Gm12338	OTTMUSG00000006216	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.020000	0.507463	
mm_108268.1	chr12	78748908	78749108	+	1	NA	NA	NA	61	NM_019579	56217	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	0.085000	0.666667	
mm_11005.1	chr2	26501775	26501975	+	1	NA	NA	NA	1947	NM_008714	18128	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0.025000	0.606965	
mm_149507.1	chr19	11965700	11965900	+	1	NA	NA	NA	-44	NM_001033174	76303	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.140000	0.731343	
mm_125317.1	chr15	38219236	38219436	+	1	NA	NA	NA	133	NM_008757	18285	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0.005000	0.417910	
mm_137062.1	chr17	19031715	19031915	+	1	NA	NA	NA	-21678	NM_001104550	224552	Mm.469860	NM_001104550	ENSMUSG00000096717	Vmn2r98	EG224552	vomeronasal 2, receptor 98	protein-coding	0.005000	0.452736	-34(TTGTATAAAAAC,-,0.00)
mm_30548.1	chr4	3684758	3684958	+	1	NA	NA	NA	6737	NM_010747	17096	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.000000	0.457711	-59(TTCTTTAAAAGC,-,0.00),-58(TCTTTAAAAGCT,+,0.00)
mm_22705.1	chr3	18695570	18695770	+	1	NA	NA	NA	-215193	NR_040544	73959	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	0.005000	0.432836	30(TGCTTTTTAAAG,-,0.00),31(GCTTTTTAAAGG,-,0.00),32(CTTTTTAAAGGG,+,0.00),32(CTTTTTAAAGGG,-,0.00),52(TCTTTTAAACAA,+,0.00)
mm_67701.1	chr7	89527003	89527203	-	1	NA	NA	NA	-9517	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.015000	0.582090	
mm_12348.1	chr2	69748932	69749132	+	1	NA	NA	NA	25944	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.025000	0.402985	
mm_98704.1	chr11	96303965	96304165	+	1	NA	NA	NA	553	NM_008268	15413	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	0.075000	0.651741	
mm_99139.1	chr11	100334311	100334511	+	1	NA	NA	NA	4	NM_010257	14459	Mm.4767	NM_010257	ENSMUSG00000017165	Gast	GAS	gastrin	protein-coding	0.015000	0.582090	-35(GGCTTTATAAGG,-,0.00),-33(CTTTATAAGGCA,+,0.00)
mm_98865.1	chr11	97775289	97775489	+	1	NA	NA	NA	529	NM_028156	72215	Mm.269049	NM_028156	ENSMUSG00000018543	1700001P01Rik	-	RIKEN cDNA 1700001P01 gene	protein-coding	0.020000	0.487562	
mm_66098.1	chr7	31036956	31037156	-	1	NA	NA	NA	3261	NR_106017	102465635		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.010000	0.502488	
mm_9315.1	chr1	171646317	171646517	-	1	NA	NA	NA	2582	NM_001347184	75345	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	0.000000	0.432836	
mm_34777.1	chr4	154011695	154011895	+	1	NA	NA	NA	-8	NM_201226	72946	Mm.260690	NM_201226	ENSMUSG00000029028	Lrrc47	2900010D03Rik|AA960559|mKIAA1185	leucine rich repeat containing 47	protein-coding	0.155000	0.726368	
mm_25262.1	chr3	104788484	104788684	+	1	NA	NA	NA	-450	NM_001291859	11853	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0.035000	0.532338	-76(GGACTTTTAAGG,-,0.00),-75(GACTTTTAAGGC,-,0.00),-74(ACTTTTAAGGCG,+,0.00)
mm_87631.1	chr10	58323474	58323674	+	1	NA	NA	NA	108	NM_026148	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.135000	0.746269	
mm_89878.1	chr10	108332067	108332267	+	1	NA	NA	NA	-22	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.095000	0.716418	
mm_160974.1	chr11	100620185	100620385	+	1	NA	NA	NA	-117	NM_019795	56354	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0.035000	0.552239	-60(CCTTTTATGAGG,+,0.00),34(GAGTTTATAAGG,-,0.00),36(GTTTATAAGGCA,+,0.00)
mm_80740.1	chr9	94713466	94713666	+	1	NA	NA	NA	-38263	NR_106116	102465763		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.000000	0.417910	
mm_104787.1	chr11	98707476	98707676	-	1	NA	NA	NA	6263	NM_009971	12985	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.020000	0.572139	
mm_31997.1	chr4	91939922	91940122	+	1	NA	NA	NA	207199	NM_027034	69314	Mm.55891	NM_027034	ENSMUSG00000028533	Izumo3	1700011H22Rik	IZUMO family member 3	protein-coding	0.005000	0.417910	
mm_147802.1	chr18	61658077	61658277	-	1	NA	NA	NA	7361	NR_045402	328968	Mm.392305	NR_045402		Carmn	Carmen|E330013P06|Gm16908|Mir143hg	cardiac mesoderm enhancer-associated non-coding RNA	ncRNA	0.010000	0.537313	-56(TACCATAAAAGG,-,0.00),-54(CCATAAAAGGAC,+,0.00)
mm_131175.1	chr16	7069760	7069960	+	1	NA	NA	NA	25	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.020000	0.482587	
mm_131698.1	chr16	20696095	20696295	+	1	NA	NA	NA	1138	NM_133778	78408	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0.060000	0.661692	
mm_77976.1	chr9	7870331	7870531	+	1	NA	NA	NA	2739	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.000000	0.487562	-35(GCTTTAAGATCC,+,0.00)
mm_124128.1	chr14	79771212	79771412	-	1	NA	NA	NA	0	NM_001042726	18530	Mm.390715	NM_021543	ENSMUSG00000036422	Pcdh8	1700080P15Rik|Papc	protocadherin 8	protein-coding	0.100000	0.681592	
mm_56174.1	chr6	88020763	88020963	-	1	NA	NA	NA	-1068	NM_001293655	19349	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.000000	0.497512	
mm_140994.1	chr17	24885765	24885965	-	1	NA	NA	NA	485	NM_011956	26426	Mm.36718	NM_011956	ENSMUSG00000039183	Nubp2	D17Wsu11e	nucleotide binding protein 2	protein-coding	0.040000	0.557214	
mm_39393.1	chr5	14025179	14025379	+	1	NA	NA	NA	3	NM_011348	20349	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	0.070000	0.631841	
mm_65306.1	chr7	24750737	24750937	-	1	NA	NA	NA	9474	NM_026862	68891	Mm.292848	NM_026862	ENSMUSG00000052212	Cd177	1190003K14Rik|Pdp3	CD177 antigen	protein-coding	0.010000	0.567164	
mm_92151.1	chr10	67185476	67185676	-	1	NA	NA	NA	-174	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.035000	0.427861	
mm_103012.1	chr11	69734664	69734864	-	1	NA	NA	NA	23869	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.000000	0.527363	
mm_123479.1	chr14	65980809	65981009	-	1	NA	NA	NA	12426	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.020000	0.537313	
mm_67156.1	chr7	73541003	73541203	-	1	NA	NA	NA	643	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.020000	0.318408	
mm_20516.1	chr2	130664501	130664701	-	1	NA	NA	NA	44	NM_029832	77006	Mm.440063	NM_029832	ENSMUSG00000068290	Ddrgk1	1110001I20Rik|2600009E05Rik|AI326138|Ufbp1	DDRGK domain containing 1	protein-coding	0.080000	0.691542	
mm_131651.1	chr16	20537406	20537606	+	1	NA	NA	NA	2026	NM_009679	11773	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.030000	0.572139	
mm_164800.1	chr18	23805657	23805857	-	1	NA	NA	NA	1787	NM_153058	212307	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.020000	0.472637	
mm_155401.1	chrX	72997183	72997383	+	1	NA	NA	NA	5204	NR_035517	100316779		NR_035517	ENSMUSG00000089357	Mir2137	mmu-mir-2137	microRNA 2137	ncRNA	0.010000	0.517413	
mm_94172.1	chr10	128805275	128805475	-	1	NA	NA	NA	-301	NM_028873	74330	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	0.115000	0.661692	-32(ACCCCTTAAAGG,-,0.00),-31(CCCCTTAAAGGG,+,0.00),-31(CCCCTTAAAGGG,-,0.00),-30(CCCTTAAAGGGC,+,0.00),-29(CCTTAAAGGGCC,+,0.00)
mm_144825.1	chr18	36348591	36348791	+	1	NA	NA	NA	67	NM_001081365	66060	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.130000	0.716418	
mm_141106.1	chr17	26021741	26021941	-	1	NA	NA	NA	19	NM_153140	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.025000	0.542289	
mm_42092.1	chr5	110308704	110308904	+	1	NA	NA	NA	22485	NM_011132	18973	Mm.35061	NM_011132	ENSMUSG00000007080	Pole	-	polymerase (DNA directed), epsilon	protein-coding	0.000000	0.368159	
mm_80876.1	chr9	98955439	98955639	+	1	NA	NA	NA	-68	NM_012020	26927	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	0.085000	0.701493	
mm_45351.1	chr5	65911758	65911958	-	1	NA	NA	NA	48289	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.020000	0.601990	
mm_52871.1	chr6	122341222	122341422	+	1	NA	NA	NA	-1095	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.015000	0.462687	
mm_136721.1	chr17	8195853	8196053	+	1	NA	NA	NA	30435	NM_201230	75296	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0.015000	0.452736	-96(GGCTTTTTAAAA,-,0.00)
mm_56654.1	chr6	113434438	113434638	-	1	NA	NA	NA	1217	NM_178373	14311	Mm.10026	NM_178373	ENSMUSG00000030278	Cidec	CIDE-3|Fsp27	cell death-inducing DFFA-like effector c	protein-coding	0.030000	0.557214	
mm_96336.1	chr11	66135389	66135589	+	1	NA	NA	NA	33062	NM_001099633	237806	Mm.264210	NM_001099633	ENSMUSG00000056752	Dnah9	9030022M04|A230091C01|C230051G16|D11Ertd686e|Dnahc9|mKIAA0357	dynein, axonemal, heavy chain 9	protein-coding	0.010000	0.442786	72(GAGTATATAAGG,-,0.00)
mm_152388.1	chr19	10462182	10462382	-	1	NA	NA	NA	-4835	NM_001111140	278795	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0.035000	0.557214	
mm_97942.1	chr11	83663359	83663559	+	1	NA	NA	NA	875	NM_013652	20303	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.005000	0.467662	
mm_12167.1	chr2	62408982	62409182	+	1	NA	NA	NA	3149	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.010000	0.517413	
mm_165745.1	chr3	107696175	107696375	-	1	NA	NA	NA	273	NM_145542	229709	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	0.150000	0.741294	
mm_37086.1	chr4	116406086	116406286	-	1	NA	NA	NA	57995	NM_001042743	17776	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0.020000	0.487562	-77(CCTTTTAGACAT,+,0.00),41(GGACATAAAAGA,-,0.00)
mm_29935.1	chr3	131613658	131613858	-	1	NA	NA	NA	47726	NM_001289477	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.015000	0.502488	
mm_126058.1	chr15	76974523	76974723	+	1	NA	NA	NA	26079	NM_054099	117171	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0.025000	0.517413	
mm_131715.1	chr16	21299799	21299999	+	1	NA	NA	NA	-3027	NR_046162	328646	Mm.404748	NR_046162	ENSMUSG00000096918	Gm16863	A830060N17	predicted gene, 16863	ncRNA	0.015000	0.452736	
mm_166648.1	chr6	85832175	85832375	-	1	NA	NA	NA	-385	NM_023455	68396	Mm.154782	NM_023455	ENSMUSG00000030004	Nat8	0610037O16Rik|CCNAT|Cml4	N-acetyltransferase 8 (GCN5-related)	protein-coding	0.005000	0.592040	
mm_13299.1	chr2	102400184	102400384	+	1	NA	NA	NA	616	NM_020267	80985	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	0.055000	0.542289	
mm_114950.1	chr13	96748211	96748411	+	1	NA	NA	NA	-77375	NM_008255	15357	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0.090000	0.676617	
mm_92709.1	chr10	80756900	80757100	-	1	NA	NA	NA	1794	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.015000	0.547264	
mm_144242.1	chr18	10725525	10725725	+	1	NA	NA	NA	0	NM_144860	225164	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0.125000	0.681592	
mm_26607.1	chr3	152226053	152226253	+	1	NA	NA	NA	15695	NM_057172	51886	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	0.030000	0.467662	
mm_140682.1	chr17	12994069	12994269	-	1	NA	NA	NA	-1630	NM_175394	60532	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.005000	0.497512	
mm_146821.1	chr18	21299852	21300052	-	1	NA	NA	NA	187	NM_001033445	381126	Mm.312276	NM_001033445	ENSMUSG00000042680	Garem1	C86169|Fam59a|Garem|Gm944|mKIAA4238	GRB2 associated regulator of MAPK1 subtype 1	protein-coding	0.120000	0.776119	
mm_103358.1	chr11	74869176	74869376	-	1	NA	NA	NA	-1082	NR_105891	102465558		NR_105891	ENSMUSG00000098317	Mir6926	Gm27949|mmu-mir-6926	microRNA 6926	ncRNA	0.015000	0.517413	
mm_146014.1	chr18	69365272	69365472	+	1	NA	NA	NA	19651	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.015000	0.507463	
mm_21343.1	chr2	157109401	157109601	-	1	NA	NA	NA	22446	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.025000	0.452736	
mm_171720.1	chr4	84915774	84915974	+	1	NA	NA	NA	31565	NM_177385	338349	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0.070000	0.597015	
mm_31393.1	chr4	48045020	48045220	+	1	NA	NA	NA	-185	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.090000	0.651741	
mm_154963.1	chrX	36981009	36981209	+	1	NA	NA	NA	8586	NM_001177324	56526	Mm.260036	NM_019942	ENSMUSG00000050379	Sept6	2810035H17Rik|C920001C06Rik|Sep6|mKIAA0128	septin 6	protein-coding	0.035000	0.452736	
mm_125133.1	chr15	30338357	30338557	+	1	NA	NA	NA	165864	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.005000	0.278607	
mm_82433.1	chr9	15045340	15045540	-	1	NA	NA	NA	38	NM_019482	55991	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.140000	0.701493	
mm_143755.1	chr17	81598176	81598376	-	1	NA	NA	NA	140111	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.000000	0.283582	
mm_134378.1	chr16	17148121	17148321	-	1	NA	NA	NA	-992	NM_001306169	76872	Mm.101656	NM_029779	ENSMUSG00000022768	Ccdc116	4930432J16Rik	coiled-coil domain containing 116	protein-coding	0.040000	0.626866	
mm_113647.1	chr13	42301519	42301719	+	1	NA	NA	NA	143	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.075000	0.577114	-49(CACTCTATAGGG,-,0.00),-34(CAATATAAAAAG,-,0.00)
mm_65999.1	chr7	30559415	30559615	-	1	NA	NA	NA	131	NM_029377	75660	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	0.030000	0.547264	
mm_38392.1	chr4	138819155	138819355	-	1	NA	NA	NA	2	NM_011110	18784	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	0.010000	0.611940	
mm_97931.1	chr11	83648120	83648320	+	1	NA	NA	NA	1158	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.020000	0.552239	
mm_151029.1	chr19	47014566	47014766	+	1	NA	NA	NA	-32	NM_146100	226180	Mm.276251	NM_146100	ENSMUSG00000034336	Ina	AV028420|NF-66|NF66	internexin neuronal intermediate filament protein, alpha	protein-coding	0.125000	0.741294	-17(CGCCTTAAAAGC,-,0.00),-16(GCCTTAAAAGCC,+,0.00),-15(CCTTAAAAGCCC,+,0.00)
mm_100800.1	chr11	4984699	4984899	-	1	NA	NA	NA	-2025	NM_001243044	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.015000	0.512438	-33(CTCCTTATAAAG,-,0.00),-31(CCTTATAAAGGG,+,0.00),-31(CCTTATAAAGGG,-,0.00)
mm_109274.1	chr12	109545982	109546182	+	1	NA	NA	NA	684	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.025000	0.567164	
mm_58248.1	chr6	145048639	145048839	-	1	NA	NA	NA	73	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.120000	0.696517	
mm_39134.1	chr4	155154816	155155016	-	1	NA	NA	NA	67619	NM_011385	20481	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.005000	0.467662	
mm_129195.1	chr15	76477179	76477379	-	1	NA	NA	NA	-10	NM_013481	12181	Mm.4283	NM_013481	ENSMUSG00000022557	Bop1	AU020183|AW146150|D18861|Erb1p|Kiaa0124|mKIAA0124	block of proliferation 1	protein-coding	0.105000	0.716418	
mm_42408.1	chr5	115025431	115025631	+	1	NA	NA	NA	14007	NM_029012	74585	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	0.005000	0.318408	
mm_18126.1	chr2	45004361	45004561	-	1	NA	NA	NA	18716	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.358209	
mm_155629.1	chrX	84109204	84109404	+	1	NA	NA	NA	-621380	NM_021898	100502723	Mm.383210	NM_021898	ENSMUSG00000035522	Tsga8	Halap-X|Halapx	testis specific gene A8	protein-coding	0.005000	0.323383	
mm_141298.1	chr17	28080091	28080291	-	1	NA	NA	NA	393	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.125000	0.716418	
mm_111082.1	chr12	80260076	80260276	-	1	NA	NA	NA	195	NM_134156	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.080000	0.711443	
mm_103428.1	chr11	75630703	75630903	-	1	NA	NA	NA	-217	NM_008916	19062	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.120000	0.696517	
mm_16205.1	chr2	173061613	173061813	+	1	NA	NA	NA	39811	NM_019547	56190	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.000000	0.587065	
mm_33630.1	chr4	132795189	132795389	+	1	NA	NA	NA	1075	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.020000	0.577114	
mm_74356.1	chr8	128357406	128357606	+	1	NA	NA	NA	-1567	NM_008737	18186	Mm.271745	NM_008737	ENSMUSG00000025810	Nrp1	C530029I03|NP-1|NPN-1|Npn1|Nrp	neuropilin 1	protein-coding	0.060000	0.671642	
mm_59643.1	chr7	28159387	28159587	+	1	NA	NA	NA	-10261	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.020000	0.577114	
mm_141431.1	chr17	29488979	29489179	-	1	NA	NA	NA	-1966	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.015000	0.462687	
mm_58069.1	chr6	136923915	136924115	-	1	NA	NA	NA	-1835	NM_026983	69187	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding	0.010000	0.492537	
mm_54344.1	chr6	30693607	30693807	-	1	NA	NA	NA	42	NM_031998	83922	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	0.055000	0.631841	
mm_20102.1	chr2	121085639	121085839	-	1	NA	NA	NA	20	NM_028799	74176	Mm.20187	NM_028799	ENSMUSG00000053675	Tgm5	2310007C07Rik|TGMX|TGx	transglutaminase 5	protein-coding	0.015000	0.626866	
mm_72512.1	chr8	83900533	83900733	+	1	NA	NA	NA	535	NM_181039	330814	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0.130000	0.746269	71(TTTTTTATACTC,+,0.00)
mm_172761.1	chr8	89146840	89147040	-	1	NA	NA	NA	-102778	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.005000	0.497512	
mm_46093.1	chr5	92347092	92347292	-	1	NA	NA	NA	1697	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.015000	0.522388	
mm_90332.1	chr10	127078935	127079135	+	1	NA	NA	NA	128	NM_001033263	216439	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.070000	0.666667	
mm_70130.1	chr7	143237997	143238197	-	1	NA	NA	NA	58450	NR_001461	63830	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.005000	0.338308	
mm_51901.1	chr6	90764339	90764539	+	1	NA	NA	NA	45684	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.025000	0.592040	
mm_48021.1	chr5	136198842	136199042	-	1	NA	NA	NA	12	NM_025774	66801	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0.105000	0.656716	
mm_29311.1	chr3	107984535	107984735	-	1	NA	NA	NA	1801	NM_008183	14863	Mm.440086	NM_008183	ENSMUSG00000040562	Gstm2	Gstb-2|Gstb2	glutathione S-transferase, mu 2	protein-coding	0.010000	0.497512	
mm_15433.1	chr2	157204196	157204396	+	1	NA	NA	NA	238	NM_011249	19650	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	retinoblastoma-like 1 (p107)	protein-coding	0.095000	0.726368	
mm_150792.1	chr19	44303206	44303406	+	1	NA	NA	NA	135	NR_039574	100628619		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.020000	0.432836	
mm_37347.1	chr4	119966736	119966936	-	1	NA	NA	NA	152158	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.020000	0.537313	-86(CTCCTTAAATGG,-,0.00),-84(CCTTAAATGGGG,+,0.00)
mm_41537.1	chr5	92856337	92856537	+	1	NA	NA	NA	-41556	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.040000	0.582090	-33(GTTTTTATAACC,+,0.00)
mm_61678.1	chr7	80993552	80993752	+	1	NA	NA	NA	-32	NM_178707	233410	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	8430405N24|A730014M16Rik|Znf592|mKIAA0211	zinc finger protein 592	protein-coding	0.165000	0.835821	
mm_53714.1	chr6	143285875	143286075	+	1	NA	NA	NA	40087	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.040000	0.467662	-64(CCTTTAAAATTC,+,0.00)
mm_94604.1	chr11	14186031	14186231	+	1	NA	NA	NA	-7090	NR_131011	75280	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	0.005000	0.363184	
mm_100192.1	chr11	116752132	116752332	+	1	NA	NA	NA	65	NR_003364	193217	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	0.020000	0.502488	
mm_97555.1	chr11	78931497	78931697	+	1	NA	NA	NA	6306	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.005000	0.547264	
mm_92671.1	chr10	80538993	80539193	-	1	NA	NA	NA	31	NM_026094	67331	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0.090000	0.706468	
mm_116616.1	chr13	48871619	48871819	-	1	NA	NA	NA	-834	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.025000	0.562189	
mm_87974.1	chr10	63480235	63480435	+	1	NA	NA	NA	22824	NM_001164376	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.015000	0.532338	
mm_89858.1	chr10	108161949	108162149	+	1	NA	NA	NA	-351	NM_027892	17931	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.165000	0.800995	
mm_93593.1	chr10	117071988	117072188	-	1	NA	NA	NA	-8274	NM_007636	12461	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.025000	0.462687	
mm_122465.1	chr14	45529708	45529908	-	1	NA	NA	NA	257	NM_146054	218952	Mm.210018	NM_146054	ENSMUSG00000037712	Fermt2	AA960555|Kindlin-2|Mig2|Plekhc1	fermitin family member 2	protein-coding	0.205000	0.835821	
mm_66513.1	chr7	45103080	45103280	-	1	NA	NA	NA	642	NM_010189	14132	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0.030000	0.507463	
mm_116029.1	chr13	25269814	25270014	-	1	NA	NA	NA	82	NM_009513	22360	Mm.4766	NM_009513	ENSMUSG00000048978	Nrsn1	Neurensin-1|Neuro-p24|Vmp	neurensin 1	protein-coding	0.105000	0.706468	
mm_64306.1	chr7	141861961	141862161	+	1	NA	NA	NA	22989	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.005000	0.492537	
mm_6352.1	chr1	71650503	71650703	-	1	NA	NA	NA	2631	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.010000	0.492537	
mm_170288.1	chr18	2999933	3000133	+	1	NA	NA	NA	123379	NM_001167539	100312476	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.030303	0.488722	
mm_102375.1	chr11	58801824	58802024	-	1	NA	NA	NA	36	NM_001162878	75429	Mm.296819	NM_029283	ENSMUSG00000049154	Fam183b	3100002J23Rik|Theg6	family with sequence similarity 183, member B	protein-coding	0.025000	0.512438	
mm_14348.1	chr2	129593464	129593664	+	1	NA	NA	NA	395	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.120000	0.786070	
mm_140677.1	chr17	12992107	12992307	-	1	NA	NA	NA	52	NM_001113533	60532	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.150000	0.776119	
mm_137065.1	chr17	20048919	20049119	+	1	NA	NA	NA	-814	NM_001104566	22313	Mm.379039	NM_001104566	ENSMUSG00000090315	Vmn2r104	V2r7	vomeronasal 2, receptor 104	protein-coding	0.025000	0.432836	
mm_56485.1	chr6	99167661	99167861	-	1	NA	NA	NA	98754	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.005000	0.298507	
mm_134602.1	chr16	20621339	20621539	-	1	NA	NA	NA	-161	NM_028420	73047	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	0.180000	0.825871	
mm_88901.1	chr10	81176546	81176746	+	1	NA	NA	NA	15	NM_007907	13629	Mm.2903	NM_007907	ENSMUSG00000034994	Eef2	Ef-2	eukaryotic translation elongation factor 2	protein-coding	0.135000	0.676617	-33(ACCTATAAAAGG,-,0.00)
mm_46867.1	chr5	113825326	113825526	-	1	NA	NA	NA	5075	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.030000	0.606965	
mm_77326.1	chr8	119424886	119425086	-	1	NA	NA	NA	-12176	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.030000	0.611940	
mm_62605.1	chr7	105742430	105742630	+	1	NA	NA	NA	1808	NM_020024	24075	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	0.010000	0.447761	
mm_1322.1	chr1	65100500	65100700	+	1	NA	NA	NA	2763	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.055000	0.597015	
mm_1698.1	chr1	75142733	75142933	+	1	NA	NA	NA	47	NM_001305231	227298	Mm.273062	NM_170755	ENSMUSG00000049339	Fam134a	-	family with sequence similarity 134, member A	protein-coding	0.145000	0.756219	
mm_134429.1	chr16	17925680	17925880	-	1	NA	NA	NA	2439	NM_153150	13358	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0.015000	0.532338	
mm_88834.1	chr10	80807587	80807787	+	1	NA	NA	NA	2439	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.055000	0.646766	
mm_119927.1	chr14	54968707	54968907	+	1	NA	NA	NA	20	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.010000	0.542289	
mm_72725.1	chr8	85059999	85060199	+	1	NA	NA	NA	-20	NM_026791	68628	Mm.374815	NM_026791	ENSMUSG00000008167	Fbxw9	1110017H11Rik|Fbw9	F-box and WD-40 domain protein 9	protein-coding	0.070000	0.592040	
mm_125510.1	chr15	55557530	55557730	+	1	NA	NA	NA	222	NM_001168250	105837	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0.080000	0.601990	
mm_29569.1	chr3	116968584	116968784	-	1	NA	NA	NA	268	NM_023245	114301	Mm.253736	NM_023245	ENSMUSG00000033377	Palmd	4631423C22Rik|PALML	palmdelphin	protein-coding	0.035000	0.562189	
mm_123364.1	chr14	63164577	63164777	-	1	NA	NA	NA	14901	NM_010191	14137	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	0.040000	0.661692	
mm_91098.1	chr10	19065068	19065268	-	1	NA	NA	NA	-49758	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.010000	0.467662	
mm_157171.1	chrX	9469341	9469541	-	1	NA	NA	NA	-117	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.328358	
mm_10607.1	chr2	18998255	18998455	+	1	NA	NA	NA	36	NR_024323	74629	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0.145000	0.726368	
mm_111390.1	chr12	88252769	88252969	-	1	NA	NA	NA	21628	NM_001013824	435337	Mm.441366	NM_001013824	ENSMUSG00000079029	Gm5662	EG435337	predicted gene 5662	protein-coding	0.010000	0.487562	
mm_116532.1	chr13	45852362	45852562	-	1	NA	NA	NA	112529	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.000000	0.437811	
mm_3881.1	chr1	161035433	161035633	+	1	NA	NA	NA	367	NR_002840	14455	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	0.050000	0.512438	
mm_126949.1	chr15	92161093	92161293	+	1	NA	NA	NA	-164	NM_001159647	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.010000	0.437811	
mm_4829.1	chr1	186137855	186138055	+	1	NA	NA	NA	-20645	NM_146106	226791	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0.035000	0.542289	
mm_111813.1	chr12	105614560	105614760	-	1	NA	NA	NA	10569	NM_007539	12061	Mm.377078	NM_007539	ENSMUSG00000041347	Bdkrb1	B1BKR|B1R|BKR1|BRADYB1|Bdkrb	bradykinin receptor, beta 1	protein-coding	0.010000	0.432836	
mm_59164.1	chr7	24389585	24389785	+	1	NA	NA	NA	-9943	NM_028047	71997	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.035000	0.597015	
mm_143596.1	chr17	74950202	74950402	-	1	NA	NA	NA	-55227	NM_019919	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.000000	0.422886	
mm_145427.1	chr18	58667662	58667862	+	1	NA	NA	NA	8280	NM_025478	66307	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	0.005000	0.422886	
mm_82249.1	chr9	4795858	4796058	-	1	NA	NA	NA	276	NM_001113180	14802	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.040000	0.552239	-56(GGGCATAAAAAG,-,0.00)
mm_63950.1	chr7	139894762	139894962	+	1	NA	NA	NA	166	NM_177261	76484	Mm.44442	NM_177261	ENSMUSG00000066129	Kndc1	2410012C07Rik|B830014K08Rik|VKIND|very-kind	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding	0.110000	0.736318	
mm_35283.1	chr4	20778796	20778996	-	1	NA	NA	NA	-228	NM_172987	269513	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding	0.015000	0.512438	
mm_137110.1	chr17	22080900	22081100	+	1	NA	NA	NA	84977	NM_177596	210853	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	0.055000	0.552239	
mm_114848.1	chr13	92844670	92844870	+	1	NA	NA	NA	-17	NM_001162945	382793	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	0.050000	0.661692	
mm_2966.1	chr1	133045933	133046133	+	1	NA	NA	NA	21	NM_001099276	240752	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphoinositide-3-kinase, class 2, beta polypeptide	protein-coding	0.125000	0.766169	
mm_93566.1	chr10	116549015	116549215	-	1	NA	NA	NA	32396	NM_001037848	72068	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.015000	0.437811	
mm_158259.1	chrX	109009746	109009946	-	1	NA	NA	NA	3534	NM_016710	50887	Mm.298443	NM_016710	ENSMUSG00000031245	Hmgn5	GARP45|NBP-45|Nsbp1	high-mobility group nucleosome binding domain 5	protein-coding	0.000000	0.467662	
mm_117222.1	chr13	64150012	64150212	-	1	NA	NA	NA	3087	NM_175494	238673	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	0.010000	0.412935	
mm_163685.1	chr13	95374792	95374992	-	1	NA	NA	NA	465	NM_025630	66549	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	0.095000	0.681592	
mm_25663.1	chr3	121724719	121724919	+	1	NA	NA	NA	1282	NM_010171	14066	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0.025000	0.522388	
mm_126224.1	chr15	78929092	78929292	+	1	NA	NA	NA	2467	NM_008495	16852	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	0.035000	0.527363	
mm_166479.1	chr5	145042892	145043092	+	1	NA	NA	NA	2	NM_027069	69396	Mm.45463	NM_027069	ENSMUSG00000029620	1700018F24Rik	AV045857	RIKEN cDNA 1700018F24 gene	protein-coding	0.010000	0.512438	
mm_152504.1	chr19	11165467	11165667	-	1	NA	NA	NA	-247	NM_027074	69416	Mm.72491	NM_027074	ENSMUSG00000024728	1700025F22Rik	-	RIKEN cDNA 1700025F22 gene	protein-coding	0.000000	0.442786	
mm_79170.1	chr9	47852372	47852572	+	1	NA	NA	NA	-34264	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.010000	0.412935	
mm_19191.1	chr2	84424328	84424528	-	1	NA	NA	NA	838	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.000000	0.328358	
mm_124444.1	chr14	118854749	118854949	-	1	NA	NA	NA	-101	NM_021386	58187	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0.095000	0.736318	
mm_92790.1	chr10	81343181	81343381	-	1	NA	NA	NA	-15	NM_148951	209047	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0.160000	0.791045	
mm_156010.1	chrX	106920671	106920871	+	1	NA	NA	NA	146	NM_175271	78134	Mm.90147	NM_175271	ENSMUSG00000049929	Lpar4	5730485F04Rik|Gpr23|LPA4|p2y9	lysophosphatidic acid receptor 4	protein-coding	0.020000	0.432836	
mm_65039.1	chr7	18561925	18562125	-	1	NA	NA	NA	5280	NM_001037168	545925	Mm.440302	NM_001037168	ENSMUSG00000070797	Psg27	EG545925|cea15	pregnancy-specific glycoprotein 27	protein-coding	0.020000	0.447761	
mm_66453.1	chr7	44869650	44869850	-	1	NA	NA	NA	38	NM_133949	84113	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0.075000	0.666667	
mm_115514.1	chr13	5724349	5724549	-	1	NA	NA	NA	133643	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.000000	0.512438	
mm_6010.1	chr1	58982521	58982721	-	1	NA	NA	NA	9050	NM_172656	227154	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	0.000000	0.437811	
mm_35719.1	chr4	44561412	44561612	-	1	NA	NA	NA	-141288	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0.030000	0.517413	
mm_57750.1	chr6	129100843	129101043	-	1	NA	NA	NA	-40	NM_153506	232409	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0.005000	0.467662	-9(GTGTATAAAAGG,-,0.00)
mm_37578.1	chr4	126301009	126301209	-	1	NA	NA	NA	14315	NM_199473	329941	Mm.296327	NM_199473	ENSMUSG00000056174	Col8a2	AI429819	collagen, type VIII, alpha 2	protein-coding	0.105000	0.741294	
mm_143485.1	chr17	71300830	71301030	-	1	NA	NA	NA	10035	NM_145158	246707	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.000000	0.497512	
mm_122523.1	chr14	47361444	47361644	-	1	NA	NA	NA	-12316	NM_010705	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.010000	0.497512	
mm_59850.1	chr7	29860010	29860210	+	1	NA	NA	NA	131	NM_172740	233058	Mm.297657	NM_172740	ENSMUSG00000058402	Zfp420	B230119D13|B230312I18Rik|mszf59-1|mszf70	zinc finger protein 420	protein-coding	0.055000	0.606965	
mm_116922.1	chr13	55529283	55529483	-	1	NA	NA	NA	-845	NM_013739	27261	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	0.005000	0.572139	-34(ACCCTTTAAAGC,-,0.00),-33(CCCTTTAAAGCA,+,0.00)
mm_88093.1	chr10	68723707	68723907	+	1	NA	NA	NA	61	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.060000	0.671642	
mm_103363.1	chr11	74927424	74927624	-	1	NA	NA	NA	1652	NM_001002764	103677	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.010000	0.482587	
mm_100236.1	chr11	117231863	117232063	+	1	NA	NA	NA	32302	NM_001113486	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.030000	0.557214	
mm_16134.1	chr2	170375526	170375726	+	1	NA	NA	NA	19265	NR_040610	73303	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.020000	0.482587	
mm_77086.1	chr8	110755535	110755735	-	1	NA	NA	NA	29909	NM_001310591	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.020000	0.567164	
mm_48342.1	chr5	139216236	139216436	-	1	NA	NA	NA	1178	NM_001256116	77053	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0.005000	0.432836	
mm_44398.1	chr5	17835768	17835968	-	1	NA	NA	NA	28	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.393035	
mm_88109.1	chr10	69151220	69151420	+	1	NA	NA	NA	-57232	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.035000	0.572139	
mm_66112.1	chr7	31041981	31042181	-	1	NA	NA	NA	-242	NM_001111073	18301	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	0.055000	0.601990	
mm_36165.1	chr4	60741180	60741380	-	1	NA	NA	NA	1	NM_001199995	100039054	Mm.482236	NM_001199995	ENSMUSG00000094793	Mup12	Gm2024	major urinary protein 12	protein-coding	0.010000	0.427861	-35(GAGTATATAAGA,-,0.00)
mm_86395.1	chr9	123968484	123968684	-	1	NA	NA	NA	108	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.000000	0.492537	
mm_43755.1	chr5	140440975	140441175	+	1	NA	NA	NA	13736	NR_106005	102466792		NR_106005	ENSMUSG00000098319	Mir7038	Gm27955|mmu-mir-7038	microRNA 7038	ncRNA	0.010000	0.552239	
mm_135349.1	chr16	43664052	43664252	-	1	NA	NA	NA	32	NM_001146325	100043314	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	ENSMUSG00000071552|Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0.010000	0.502488	
mm_137969.1	chr17	33555662	33555862	+	1	NA	NA	NA	55	NM_053214	17916	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0.010000	0.582090	
mm_118465.1	chr14	11553407	11553607	+	1	NA	NA	NA	-46	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.135000	0.716418	
mm_24117.1	chr3	88162948	88163148	+	1	NA	NA	NA	14737	NR_045997	76642	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.015000	0.557214	
mm_154231.1	chr19	60226544	60226744	-	1	NA	NA	NA	53	NM_029648	76539	Mm.290183	NM_029648	ENSMUSG00000057858	Fam204a	2310065H12Rik|2610015K05Rik|D19Ertd737e	family with sequence similarity 204, member A	protein-coding	0.125000	0.681592	
mm_166874.1	chr7	25390027	25390227	-	1	NA	NA	NA	-15	NM_001039507	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.010000	0.597015	
mm_22498.1	chr3	7366492	7366692	+	1	NA	NA	NA	-12	NM_008862	18767	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	0.090000	0.696517	
mm_69920.1	chr7	141822949	141823149	-	1	NA	NA	NA	-16023	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.005000	0.497512	
mm_124552.1	chr14	122912922	122913122	-	1	NA	NA	NA	143	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.105000	0.726368	
mm_132106.1	chr16	31428798	31428998	+	1	NA	NA	NA	145	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.065000	0.636816	
mm_74002.1	chr8	121079382	121079582	+	1	NA	NA	NA	3628	NR_045471	68790	Mm.246916	NR_045471	ENSMUSG00000097336	Fendrr	1110050K14Rik|LL66|linc-Foxf1a|lincFoxf1	Foxf1 adjacent non-coding developmental regulatory RNA	ncRNA	0.025000	0.482587	
mm_81569.1	chr9	110420719	110420919	+	1	NA	NA	NA	1011	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.005000	0.477612	
mm_14870.1	chr2	148799541	148799741	+	1	NA	NA	NA	802	NM_009978	13012	Mm.20435	NM_009978	ENSMUSG00000027442	Cst8	Cres|Cst-rs1	cystatin 8 (cystatin-related epididymal spermatogenic)	protein-coding	0.010000	0.407960	
mm_68747.1	chr7	121064541	121064741	-	1	NA	NA	NA	9889	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.010000	0.432836	
mm_30577.1	chr4	3940649	3940849	+	1	NA	NA	NA	1325	NR_104356	66433	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	0.005000	0.343284	
mm_73959.1	chr8	120487057	120487257	+	1	NA	NA	NA	-1709	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.065000	0.547264	
mm_108940.1	chr12	102128629	102128829	+	1	NA	NA	NA	-690	NM_172152	238384	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0.075000	0.696517	
mm_12079.1	chr2	59806056	59806256	+	1	NA	NA	NA	76450	NM_001159636	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.005000	0.497512	-35(CTCTTTATAAAG,-,0.00),-33(CTTTATAAAGAG,+,0.00)
mm_81755.1	chr9	113958605	113958805	+	1	NA	NA	NA	27771	NM_013699	22221	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0.035000	0.492537	
mm_70098.1	chr7	142660915	142661115	-	1	NA	NA	NA	256	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.075000	0.656716	
mm_39735.1	chr5	29196012	29196212	+	1	NA	NA	NA	119	NR_110371	56874	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	0.090000	0.641791	
mm_49188.1	chr6	15185489	15185689	+	1	NA	NA	NA	83	NM_001286607	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.030000	0.462687	
mm_134914.1	chr16	30310681	30310881	-	1	NA	NA	NA	0	NM_008148	14729	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	0.000000	0.452736	
mm_16807.1	chr2	10130564	10130764	-	1	NA	NA	NA	19	NM_010582	16425	Mm.182043	NM_010582	ENSMUSG00000037254	Itih2	AI747202|Intin2|Itih-2	inter-alpha trypsin inhibitor, heavy chain 2	protein-coding	0.015000	0.457711	-17(CTTTTTAAAACG,+,0.00)
mm_45129.1	chr5	48754429	48754629	-	1	NA	NA	NA	135028	NM_030265	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.005000	0.437811	
mm_8180.1	chr1	138080158	138080358	-	1	NA	NA	NA	94868	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.477612	
mm_18577.1	chr2	66124639	66124839	-	1	NA	NA	NA	54	NM_015736	14425	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.140000	0.766169	
mm_37362.1	chr4	120797724	120797924	-	1	NA	NA	NA	-25127	NR_029602	723836		NR_029602	ENSMUSG00000065409	Mir30e	Mirn30e|mir-30e|mmu-mir-30e	microRNA 30e	ncRNA	0.015000	0.442786	
mm_12327.1	chr2	69394133	69394333	+	1	NA	NA	NA	13771	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.005000	0.432836	
mm_26629.1	chr3	152908246	152908446	+	1	NA	NA	NA	73861	NM_012028	26938	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.000000	0.378109	
mm_119682.1	chr14	53345791	53345991	+	1	NA	NA	NA	-850196	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.000000	0.452736	
mm_46249.1	chr5	99249585	99249785	-	1	NA	NA	NA	3242	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.005000	0.293532	51(CCTCTTAAGGTG,+,0.00)
mm_2382.1	chr1	93478918	93479118	+	1	NA	NA	NA	25	NM_001159717	18000	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	0.120000	0.671642	
mm_14672.1	chr2	139493944	139494144	+	1	NA	NA	NA	124	NM_175467	228677	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	0.005000	0.422886	47(TTCCTTTAAAGG,-,0.00),48(TCCTTTAAAGGC,+,0.00),48(TCCTTTAAAGGC,-,0.00),49(CCTTTAAAGGCT,+,0.00)
mm_155020.1	chrX	42060294	42060494	+	1	NA	NA	NA	-7442	NM_009688	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.015000	0.512438	-34(GCTTTAAGACCC,+,0.00)
mm_153646.1	chr19	44248050	44248250	-	1	NA	NA	NA	44862	NM_024450	30049	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	0.050000	0.572139	
mm_75789.1	chr8	70095187	70095387	-	1	NA	NA	NA	7299	NR_106033	102465646		NR_106033	ENSMUSG00000099042	Mir7066	Gm27290|mmu-mir-7066	microRNA 7066	ncRNA	0.030000	0.507463	
mm_74153.1	chr8	123381348	123381548	+	1	NA	NA	NA	7737	NM_001286363	66855	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0.025000	0.522388	
mm_143497.1	chr17	71475421	71475621	-	1	NA	NA	NA	-178	NM_028887	74355	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0.125000	0.786070	
mm_164146.1	chr15	59739192	59739392	-	1	NA	NA	NA	55667	NR_045076	100503021	Mm.402924	NR_045076		Gm19510	-	predicted gene, 19510	ncRNA	0.015000	0.412935	69(ACTTTTATAAGG,-,0.00)
mm_160276.1	chr7	119896039	119896239	+	1	NA	NA	NA	-153	NM_029610	73919	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0.050000	0.631841	
mm_33594.1	chr4	132564097	132564297	+	1	NA	NA	NA	130	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.010000	0.611940	
mm_93774.1	chr10	120476116	120476316	-	1	NA	NA	NA	253	NM_001347170	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0.090000	0.671642	
mm_80216.1	chr9	72532096	72532296	+	1	NA	NA	NA	-44	NM_001033536	319758	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	0.195000	0.850746	
mm_166457.1	chr5	138230960	138231160	+	1	NA	NA	NA	5156	NM_001013773	381680	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0.000000	0.417910	
mm_66045.1	chr7	30671483	30671683	-	1	NA	NA	NA	22	NR_027849	74927	Mm.87326	NM_183108	ENSMUSG00000049761	Pmis2	1700071L20Rik|4930479M11Rik	Pmis2, sperm specific protein	ncRNA	0.020000	0.502488	
mm_89030.1	chr10	82699114	82699314	+	1	NA	NA	NA	207	NM_001081218	67933	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838	host cell factor C2	protein-coding	0.110000	0.676617	
mm_169825.1	chr16	23108399	23108599	+	1	NA	NA	NA	-454	NR_030705	100216532		NR_030705	ENSMUSG00000088524	Snord2	-	small nucleolar RNA, C/D box 2	snoRNA	0.055000	0.587065	24(GGCCCTTTAAGG,-,0.00),25(GCCCTTTAAGGG,-,0.00),26(CCCTTTAAGGGT,+,0.00),27(CCTTTAAGGGTC,+,0.00)
mm_20358.1	chr2	128179060	128179260	-	1	NA	NA	NA	51585	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.020000	0.552239	
mm_78545.1	chr9	35305348	35305548	+	1	NA	NA	NA	24343	NR_040715	71133	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.025000	0.358209	
mm_150997.1	chr19	46624278	46624478	+	1	NA	NA	NA	977	NM_001177813	226178	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.015000	0.601990	
mm_61746.1	chr7	82648524	82648724	+	1	NA	NA	NA	10	NM_175317	101592	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	0.085000	0.656716	
mm_113467.1	chr13	36255382	36255582	+	1	NA	NA	NA	137839	NM_001039189	69955	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.005000	0.243781	
mm_121303.1	chr14	105896028	105896228	+	1	NA	NA	NA	691	NM_011897	24064	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty homolog 2 (Drosophila)	protein-coding	0.080000	0.686567	
mm_97066.1	chr11	72946494	72946694	+	1	NA	NA	NA	-14575	NM_016745	53313	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0.010000	0.542289	
mm_66138.1	chr7	31114608	31114808	-	1	NA	NA	NA	618	NM_008281	15451	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0.025000	0.631841	
mm_152734.1	chr19	18936519	18936719	-	1	NA	NA	NA	64498	NM_146095	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.005000	0.293532	
mm_63272.1	chr7	126762119	126762319	+	1	NA	NA	NA	2593	NM_011952	26417	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.000000	0.447761	
mm_51281.1	chr6	72162722	72162922	+	1	NA	NA	NA	-39625	NR_045165	71265	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.020000	0.497512	
mm_22407.1	chr2	181294736	181294936	-	1	NA	NA	NA	-6870	NM_198169	229004	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.005000	0.402985	
mm_128234.1	chr15	36608258	36608458	-	1	NA	NA	NA	615	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.125000	0.726368	
mm_93477.1	chr10	111799770	111799970	-	1	NA	NA	NA	74506	NR_046029	629206	Mm.391444	NR_046029		Gm20758	-	predicted gene, 20758	ncRNA	0.020000	0.477612	-78(AAGTTTTAAAGG,-,0.00)
mm_115207.1	chr13	109260224	109260424	+	1	NA	NA	NA	-64420	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.050000	0.572139	
mm_66536.1	chr7	45154162	45154362	-	1	NA	NA	NA	-41	NM_029406	68845	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	0.125000	0.691542	
mm_136995.1	chr17	17402788	17402988	+	1	NA	NA	NA	202	NM_025681	66643	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.005000	0.472637	
mm_170863.1	chr2	181932074	181932274	+	1	NA	NA	NA	-59052	NM_001205282	672125	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	OTTMUSG00000016837	predicted gene 14496	protein-coding	0.000000	0.432836	
mm_94407.1	chr11	5797447	5797647	+	1	NA	NA	NA	6249	NM_018870	56012	Mm.219627	NM_018870	ENSMUSG00000020475	Pgam2	-	phosphoglycerate mutase 2	protein-coding	0.035000	0.616915	
mm_74057.1	chr8	122335866	122336066	+	1	NA	NA	NA	24780	NM_133202	170732	Mm.154808	NM_133202	ENSMUSG00000039079	Trhr2	TRH-R2	thyrotropin releasing hormone receptor 2	protein-coding	0.075000	0.606965	
mm_141573.1	chr17	32320569	32320769	-	1	NA	NA	NA	569	NM_019774	56399	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	0.090000	0.646766	
mm_49593.1	chr6	30645207	30645407	+	1	NA	NA	NA	6089	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.010000	0.477612	16(CCCCATTTAGGC,-,0.00)
mm_158449.1	chrX	140543022	140543222	-	1	NA	NA	NA	65	NM_010286	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.010000	0.522388	-98(TCCTATATAAAG,-,0.00)
mm_32041.1	chr4	95967163	95967363	+	1	NA	NA	NA	-116	NM_030014	77963	Mm.49994	NM_030014	ENSMUSG00000028572	Hook1	A930033L17Rik|azh	hook microtubule tethering protein 1	protein-coding	0.135000	0.731343	
mm_76049.1	chr8	77670827	77671027	-	1	NA	NA	NA	46755	NR_045467	67357	Mm.71129	NR_045467	ENSMUSG00000086781	1700092C02Rik	-	RIKEN cDNA 1700092C02 gene	ncRNA	0.000000	0.472637	
mm_172729.1	chr8	76411759	76411959	+	1	NA	NA	NA	488314	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA	0.040000	0.532338	
mm_39349.1	chr5	8912661	8912861	+	1	NA	NA	NA	19040	NM_008830	18670	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.055000	0.482587	
mm_88789.1	chr10	80615313	80615513	+	1	NA	NA	NA	6153	NR_105877	102465550		NR_105877	ENSMUSG00000099283	Mir6912	Gm27990|mmu-mir-6912	microRNA 6912	ncRNA	0.005000	0.592040	
mm_17703.1	chr2	32381815	32382015	-	1	NA	NA	NA	0	NM_198001	73737	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0.130000	0.721393	
mm_40568.1	chr5	62879933	62880133	+	1	NA	NA	NA	66210	NM_001170705	100322896	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0.000000	0.288557	
mm_22101.1	chr2	169403268	169403468	-	1	NA	NA	NA	-230278	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.000000	0.412935	
mm_33259.1	chr4	127172782	127172982	+	1	NA	NA	NA	2	NM_001302081	242667	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	discs, large (Drosophila) homolog-associated protein 3	protein-coding	0.000000	0.507463	
mm_656.1	chr1	40433801	40434001	+	1	NA	NA	NA	4331	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.010000	0.472637	
mm_120239.1	chr14	62926350	62926550	+	1	NA	NA	NA	58060	NM_001037751	432867	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0.005000	0.492537	
mm_96664.1	chr11	69409582	69409782	+	1	NA	NA	NA	3993	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.035000	0.577114	
mm_171240.1	chr3	74242502	74242702	+	1	NA	NA	NA	-225325	NR_040450	100504692	Mm.394454	NR_040450	ENSMUSG00000104096	Gm20356	-	predicted gene, 20356	ncRNA	0.015000	0.437811	
mm_57783.1	chr6	129267972	129268172	-	1	NA	NA	NA	7297	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.005000	0.417910	
mm_119223.1	chr14	33247605	33247805	+	1	NA	NA	NA	30882	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.025000	0.572139	
mm_126735.1	chr15	85670906	85671106	+	1	NA	NA	NA	-32767	NR_110483	102800312	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0.145000	0.805970	
mm_11042.1	chr2	27034563	27034763	+	1	NA	NA	NA	-6665	NM_001177627	227659	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.035000	0.457711	
mm_153721.1	chr19	44406542	44406742	-	1	NA	NA	NA	1067	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.035000	0.552239	
mm_47342.1	chr5	122502541	122502741	-	1	NA	NA	NA	-416	NR_027838	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.115000	0.716418	
mm_4269.1	chr1	171559008	171559208	+	1	NA	NA	NA	-85	NM_018729	18106	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0.010000	0.522388	
mm_168609.1	chr11	75732901	75733101	+	1	NA	NA	NA	114	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.120000	0.651741	
mm_105817.1	chr11	112157246	112157446	-	1	NA	NA	NA	554010	NR_024085	217294	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA	0.040000	0.467662	
mm_128238.1	chr15	36608522	36608722	-	1	NA	NA	NA	351	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.130000	0.731343	
mm_39638.1	chr5	24483813	24484013	+	1	NA	NA	NA	31736	NM_139153	213990	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.005000	0.462687	
mm_78171.1	chr9	21091648	21091848	+	1	NA	NA	NA	240	NM_027911	71766	Mm.196137	NM_027911	ENSMUSG00000010205	Raver1	1300006N24Rik|AA050359|mKIAA1978	ribonucleoprotein, PTB-binding 1	protein-coding	0.115000	0.686567	
mm_92053.1	chr10	62506189	62506389	-	1	NA	NA	NA	1466	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.030000	0.472637	
mm_80082.1	chr9	70067826	70068026	+	1	NA	NA	NA	-29838	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.010000	0.442786	
mm_38969.1	chr4	150902068	150902268	-	1	NA	NA	NA	7753	NM_020569	57320	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.025000	0.532338	
mm_33504.1	chr4	130905153	130905353	+	1	NA	NA	NA	-8081	NM_010686	16792	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3	lysosomal-associated protein transmembrane 5	protein-coding	0.010000	0.532338	
mm_128373.1	chr15	42676224	42676424	-	1	NA	NA	NA	653	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.055000	0.517413	
mm_150482.1	chr19	38930937	38931137	+	1	NA	NA	NA	47	NM_008234	15201	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	0.145000	0.731343	
mm_137552.1	chr17	27561256	27561456	+	1	NA	NA	NA	4371	NM_001002895	106672	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251	expressed sequence AI413582	protein-coding	0.015000	0.597015	
mm_31545.1	chr4	55532638	55532838	+	1	NA	NA	NA	-263	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.155000	0.796020	
mm_14337.1	chr2	129592876	129593076	+	1	NA	NA	NA	137	NM_001291020	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.095000	0.686567	-37(CACCTTAAGAGG,-,0.00)
mm_154184.1	chr19	58793204	58793404	-	1	NA	NA	NA	1110	NM_026208	67507	Mm.27027	NM_026208	ENSMUSG00000026931	1700019N19Rik	-	RIKEN cDNA 1700019N19 gene	protein-coding	0.010000	0.477612	
mm_5785.1	chr1	51796950	51797150	-	1	NA	NA	NA	118928	NM_001290982	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.030000	0.452736	
mm_114660.1	chr13	78118159	78118359	+	1	NA	NA	NA	78190	NM_001347538	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.020000	0.502488	
mm_59993.1	chr7	30554941	30555141	+	1	NA	NA	NA	1739	NM_001012401	243912	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	0.010000	0.497512	
mm_90050.1	chr10	116143792	116143992	+	1	NA	NA	NA	-6	NM_001161837	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	0.025000	0.522388	
mm_126948.1	chr15	92160591	92160791	+	1	NA	NA	NA	-666	NM_001159647	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.020000	0.363184	
mm_39952.1	chr5	32133452	32133652	+	1	NA	NA	NA	-2920	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.060000	0.606965	
mm_170173.1	chr1	75713742	75713942	-	1	NA	NA	NA	167576	NM_009208	20536	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	0.050000	0.631841	
mm_71158.1	chr8	40423717	40423917	+	1	NA	NA	NA	2	NM_178395	70546	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik	zinc finger, DHHC domain containing 2	protein-coding	0.160000	0.800995	
mm_48294.1	chr5	138207210	138207410	-	1	NA	NA	NA	12996	NM_177878	330216	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	0.005000	0.407960	
mm_117122.1	chr13	60897328	60897528	-	1	NA	NA	NA	19	NM_007797	13025	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	0.010000	0.552239	
mm_48617.1	chr5	144761505	144761705	-	1	NA	NA	NA	-27	NM_177735	243339	Mm.126793	NM_177735	ENSMUSG00000043388	Tmem130	BC067004|C130036G08	transmembrane protein 130	protein-coding	0.090000	0.691542	
mm_23174.1	chr3	40783998	40784198	+	1	NA	NA	NA	-15853	NM_173169	20873	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo-like kinase 4	protein-coding	0.005000	0.373134	
mm_105369.1	chr11	103208433	103208633	-	1	NA	NA	NA	15	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.020000	0.577114	
mm_45361.1	chr5	66001237	66001437	-	1	NA	NA	NA	2948	NR_027961	231253	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.010000	0.532338	
mm_163511.1	chr12	113259031	113259231	-	1	NA	NA	NA	73228	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.035000	0.587065	
mm_161516.1	chr15	99126079	99126279	+	1	NA	NA	NA	-666	NM_139140	72572	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.110000	0.651741	
mm_155554.1	chrX	74449607	74449807	+	1	NA	NA	NA	20026	NM_010547	16151	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	0.005000	0.358209	-73(CCATTAAGAGTG,+,0.00),-29(GGATTTAAAAAG,-,0.00)
mm_59038.1	chr7	19332983	19333183	+	1	NA	NA	NA	-11988	NM_001127324	13870	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.135000	0.686567	
mm_106534.1	chr11	120573610	120573810	-	1	NA	NA	NA	-774	NM_011032	18453	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.055000	0.497512	
mm_43326.1	chr5	135009212	135009412	+	1	NA	NA	NA	13	NM_145215	68758	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.060000	0.606965	
mm_145818.1	chr18	65430964	65431164	+	1	NA	NA	NA	67	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.115000	0.716418	
mm_98750.1	chr11	96545284	96545484	+	1	NA	NA	NA	80793	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.025000	0.462687	
mm_161643.1	chr16	96235505	96235705	+	1	NA	NA	NA	-196	NM_001122993	93961	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	0.015000	0.497512	
mm_172745.1	chr8	80739196	80739396	-	1	NA	NA	NA	163	NM_053124	93762	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.135000	0.731343	
mm_81296.1	chr9	108338959	108339159	+	1	NA	NA	NA	-21	NM_008160	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.040000	0.582090	
mm_171389.1	chr4	122141596	122141796	+	1	NA	NA	NA	-519571	NM_001099309	666927	Mm.465133	NM_001099309	ENSMUSG00000078575	Gm12887	OTTMUSG00000008910	predicted gene 12887	protein-coding	0.020000	0.517413	-29(TCCTATATAAGC,-,0.00)
mm_11998.1	chr2	57116801	57117001	+	1	NA	NA	NA	-1863	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.060000	0.656716	
mm_100755.1	chr11	4346803	4347003	-	1	NA	NA	NA	80107	NM_001039537	16878	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.005000	0.512438	
mm_150034.1	chr19	29376563	29376763	+	1	NA	NA	NA	9225	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.402985	14(GGGTTTTAAAGG,-,0.00)
mm_116683.1	chr13	49248619	49248819	-	1	NA	NA	NA	-13	NM_028340	66329	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.005000	0.562189	
mm_56957.1	chr6	120037770	120037970	-	1	NA	NA	NA	785	NM_001199083	232341	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0.115000	0.731343	
mm_79866.1	chr9	65077832	65078032	+	1	NA	NA	NA	-23554	NM_001290315	56741	Mm.209041	NM_020043	ENSMUSG00000032816	Igdcc4	DDM36|Nope	immunoglobulin superfamily, DCC subclass, member 4	protein-coding	0.025000	0.482587	
mm_48566.1	chr5	143247530	143247730	-	1	NA	NA	NA	12467	NM_177681	231866	Mm.55211	NM_177681	ENSMUSG00000029587	Zfp12	C530015C18|Krox-7|Zfp-12|Znf12	zinc finger protein 12	protein-coding	0.035000	0.497512	
mm_57818.1	chr6	129462633	129462833	-	1	NA	NA	NA	10046	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.437811	76(GACTTTAAAAGC,-,0.00),77(ACTTTAAAAGCC,+,0.00)
mm_75932.1	chr8	71525625	71525825	-	1	NA	NA	NA	11712	NM_198095	69550	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	0.095000	0.696517	
mm_173185.1	chrX	60057998	60058198	-	1	NA	NA	NA	58634	NM_001305797	14071	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	0.000000	0.402985	
mm_63375.1	chr7	127211604	127211804	+	1	NA	NA	NA	96	NM_016754	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.010000	0.497512	
mm_64257.1	chr7	141744639	141744839	+	1	NA	NA	NA	-44272	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.020000	0.507463	
mm_22481.1	chr3	5221096	5221296	+	1	NA	NA	NA	-373	NR_045905	72608	Mm.384359	NR_045905		2700069I18Rik	-	RIKEN cDNA 2700069I18 gene	ncRNA	0.010000	0.482587	
mm_140933.1	chr17	24414324	24414524	-	1	NA	NA	NA	89	NR_033554	654822	Mm.489806	NM_001039561	ENSMUSG00000073437	D330041H03Rik	-	RIKEN cDNA D330041H03 gene	ncRNA	0.050000	0.557214	
mm_79972.1	chr9	66593135	66593335	+	1	NA	NA	NA	-120	NM_001302122	235441	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.060000	0.651741	
mm_99373.1	chr11	101984180	101984380	+	1	NA	NA	NA	511	NM_028207	72349	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	0.045000	0.582090	
mm_46022.1	chr5	90905186	90905386	-	1	NA	NA	NA	1387	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.020000	0.432836	
mm_19308.1	chr2	90524939	90525139	-	1	NA	NA	NA	-45865	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.005000	0.303483	
mm_74308.1	chr8	126592091	126592291	+	1	NA	NA	NA	1245	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.030000	0.542289	
mm_54799.1	chr6	41687470	41687670	-	1	NA	NA	NA	3139	NM_029671	76606	Mm.272520	NM_029671	ENSMUSG00000029867	1700034O15Rik	-	RIKEN cDNA 1700034O15 gene	protein-coding	0.005000	0.412935	
mm_16754.1	chr2	9868740	9868940	-	1	NA	NA	NA	9760	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.035000	0.537313	55(CCTTATCAAGCC,+,0.00)
mm_133446.1	chr16	87787446	87787646	+	1	NA	NA	NA	88592	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.020000	0.412935	
mm_105552.1	chr11	106388012	106388212	-	1	NA	NA	NA	-5331	NM_010494	15896	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.025000	0.472637	
mm_156968.1	chrX	169997148	169997348	+	1	NA	NA	NA	-18331	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.095000	0.646766	
mm_131377.1	chr16	13940576	13940776	+	1	NA	NA	NA	11	NM_033564	93734	Mm.76554	NM_033564	ENSMUSG00000022679	Mpv17l	M-LP	Mpv17 transgene, kidney disease mutant-like	protein-coding	0.070000	0.651741	
mm_81667.1	chr9	111024942	111025142	+	1	NA	NA	NA	5750	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.015000	0.492537	
mm_6645.1	chr1	79666719	79666919	-	1	NA	NA	NA	5153	NM_183027	252903	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0.015000	0.402985	
mm_129434.1	chr15	78494966	78495166	-	1	NA	NA	NA	0	NM_008368	16185	Mm.35287	NM_008368	ENSMUSG00000068227	Il2rb	CD122|IL-15Rbeta|IL15Rbeta|Il-2/15Rbeta|Il-2Rbeta|p70	interleukin 2 receptor, beta chain	protein-coding	0.020000	0.582090	
mm_139786.1	chr17	65799941	65800141	+	1	NA	NA	NA	16686	NR_104465	70351	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0.005000	0.442786	-92(CCTTTTATGAAC,+,0.00)
mm_67706.1	chr7	89940969	89941169	-	1	NA	NA	NA	135	NM_001291289	67669	Mm.28679	NM_026304	ENSMUSG00000062797	Hikeshi	0610007P06Rik|1110002N09Rik|l(7)6Rn|l7Rn6	heat shock protein nuclear import factor	protein-coding	0.055000	0.606965	
mm_118322.1	chr13	113600665	113600865	-	1	NA	NA	NA	17799	NM_130796	170625	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.010000	0.512438	
mm_66817.1	chr7	48393418	48393618	-	1	NA	NA	NA	4992	NM_207539	404240	Mm.357942	NM_207539	ENSMUSG00000050870	Mrgprb8	MrgB8	MAS-related GPR, member B8	protein-coding	0.005000	0.487562	
mm_103247.1	chr11	70812421	70812621	-	1	NA	NA	NA	40	NM_001045526	327957	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0.010000	0.547264	
mm_51181.1	chr6	70726764	70726964	+	1	NA	NA	NA	65311	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.507463	
mm_141640.1	chr17	33139574	33139774	-	1	NA	NA	NA	9	NM_177719	240069	Mm.157765	NM_177719	ENSMUSG00000048602	Morc2b	4932411A10Rik|Tce6	microrchidia 2B	protein-coding	0.060000	0.601990	
mm_2040.1	chr1	87264258	87264458	+	1	NA	NA	NA	-6	NM_028889	98363	Mm.247951	NM_028889	ENSMUSG00000026255	Efhd1	4931430I01Rik|AI452351|PP3051|mitocalcin	EF hand domain containing 1	protein-coding	0.110000	0.651741	
mm_94793.1	chr11	22971931	22972131	+	1	NA	NA	NA	26	NM_011663	22183	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.065000	0.562189	
mm_83398.1	chr9	44733918	44734118	-	1	NA	NA	NA	1180	NM_153537	102693	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.080000	0.641791	
mm_77192.1	chr8	111992177	111992377	-	1	NA	NA	NA	25	NM_013925	30947	Mm.282162	NM_013925	ENSMUSG00000031949	Adat1	MMADAT1|mADAT1	adenosine deaminase, tRNA-specific 1	protein-coding	0.100000	0.626866	
mm_7476.1	chr1	120504659	120504859	-	1	NA	NA	NA	325	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.015000	0.487562	
mm_140209.1	chr17	83775562	83775762	+	1	NA	NA	NA	69499	NM_001171052	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.050000	0.557214	
mm_96473.1	chr11	67652518	67652718	+	1	NA	NA	NA	-42708	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.000000	0.547264	
mm_86302.1	chr9	122349142	122349342	-	1	NA	NA	NA	-2374	NM_026179	67469	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0.000000	0.398010	-23(ACCTATAAATAG,-,0.00)
mm_83508.1	chr9	45984445	45984645	-	1	NA	NA	NA	326	NM_008775	18475	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0.125000	0.800995	
mm_73477.1	chr8	106917530	106917730	+	1	NA	NA	NA	-18120	NM_009229	20650	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0.020000	0.522388	
mm_84757.1	chr9	75572702	75572902	-	1	NA	NA	NA	-13145	NM_016963	50875	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0.000000	0.313433	
mm_148315.1	chr18	83768036	83768236	-	1	NA	NA	NA	318426	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.020000	0.547264	
mm_76982.1	chr8	106893495	106893695	-	1	NA	NA	NA	-2	NM_145412	214987	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	0.190000	0.766169	
mm_48784.1	chr5	148553769	148553969	-	1	NA	NA	NA	-1081	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.055000	0.542289	
mm_104129.1	chr11	86807447	86807647	-	1	NA	NA	NA	113	NM_026191	67487	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.115000	0.656716	
mm_67330.1	chr7	79733241	79733441	-	1	NA	NA	NA	-565	NM_001113471	103968	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	0.010000	0.383085	
mm_104237.1	chr11	88717954	88718154	-	1	NA	NA	NA	175	NM_054043	76626	Mm.400451	NM_054043	ENSMUSG00000069769	Msi2	1700105C15Rik|AI451722|AI563628|AW489193|Msi2h	musashi RNA-binding protein 2	protein-coding	0.130000	0.756219	
mm_122961.1	chr14	54970621	54970821	-	1	NA	NA	NA	1934	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.005000	0.527363	
mm_97685.1	chr11	80089348	80089548	+	1	NA	NA	NA	48	NM_001029856	237877	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	0.105000	0.651741	
mm_66515.1	chr7	45103630	45103830	-	1	NA	NA	NA	92	NM_010189	14132	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0.010000	0.562189	
mm_141364.1	chr17	28915222	28915422	-	1	NA	NA	NA	2	NM_172450	207819	Mm.248931	NM_172450	ENSMUSG00000048905	4930539E08Rik	9130014G02	RIKEN cDNA 4930539E08 gene	protein-coding	0.005000	0.507463	-34(CTATATATAAGC,-,0.00)
mm_91808.1	chr10	53957276	53957476	-	1	NA	NA	NA	118420	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.005000	0.378109	
mm_97393.1	chr11	77802314	77802514	+	1	NA	NA	NA	1116	NM_001291215	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.015000	0.587065	
mm_117010.1	chr13	58020848	58021048	-	1	NA	NA	NA	2252	NR_030544	100124491		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	0.005000	0.388060	
mm_94933.1	chr11	29693064	29693264	+	1	NA	NA	NA	266	NM_194052	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.105000	0.686567	
mm_33222.1	chr4	126677599	126677799	+	1	NA	NA	NA	56	NM_011970	26445	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	0.080000	0.656716	
mm_147833.1	chr18	62548643	62548843	-	1	NA	NA	NA	0	NM_134136	107035	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	0.105000	0.651741	
mm_53290.1	chr6	129008695	129008895	+	1	NA	NA	NA	-5317	NM_001277202	435921	Mm.489572	NM_001277202		Clec2f	Clec2f-ps|Clr-c|Clrc|Clrz	C-type lectin domain family 2, member f	protein-coding	0.025000	0.487562	
mm_26074.1	chr3	136670323	136670523	+	1	NA	NA	NA	357	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.130000	0.746269	
mm_37587.1	chr4	126429407	126429607	-	1	NA	NA	NA	35	NM_153402	214150	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0.140000	0.716418	
mm_145868.1	chr18	65463193	65463393	+	1	NA	NA	NA	32296	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.383085	33(TCCTTTTAAAAG,-,0.00),34(CCTTTTAAAAGC,+,0.00),34(CCTTTTAAAAGC,-,0.00),35(CTTTTAAAAGCT,+,0.00)
mm_40262.1	chr5	38277310	38277510	+	1	NA	NA	NA	6	NM_172709	21906	Mm.204765	NM_172709	ENSMUSG00000051596	Otop1	A530025J20Rik|Otp1|tlt	otopetrin 1	protein-coding	0.095000	0.731343	
mm_20786.1	chr2	143989791	143989991	-	1	NA	NA	NA	21372	NM_133626	81910	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.015000	0.532338	
mm_81185.1	chr9	107533912	107534112	+	1	NA	NA	NA	67	NM_019704	56395	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	0.100000	0.671642	
mm_16579.1	chr2	3512664	3512864	-	1	NA	NA	NA	50	NR_103465	50497	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	0.095000	0.641791	
mm_156152.1	chrX	129943760	129943960	+	1	NA	NA	NA	194118	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.005000	0.333333	-8(ACTTTTAGGGGG,+,0.00)
mm_157583.1	chrX	53055284	53055484	-	1	NA	NA	NA	-1035	NR_029756	723907		NR_029756	ENSMUSG00000065418	Mir322	Mirn322|mmu-mir-322	microRNA 322	ncRNA	0.015000	0.328358	
mm_100763.1	chr11	4579881	4580081	-	1	NA	NA	NA	14834	NM_028860	74302	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0.015000	0.383085	
mm_107182.1	chr12	25038268	25038468	+	1	NA	NA	NA	57724	NM_010496	15902	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.030000	0.512438	
mm_57734.1	chr6	128970236	128970436	-	1	NA	NA	NA	-824	NM_001168224	70809	Mm.439891	NM_027562	ENSMUSG00000000248	Clec2g	4632413B12Rik|Clr-c|Clr-d|Clrc|Clrd|Clrx|Ddv10|Ocilrp1	C-type lectin domain family 2, member g	protein-coding	0.010000	0.447761	-38(TTCTATATAAAC,-,0.00)
mm_57280.1	chr6	124321565	124321765	-	1	NA	NA	NA	17014	NM_053094	93671	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.025000	0.587065	28(CGCTCTTAAAGT,-,0.00),29(GCTCTTAAAGTG,+,0.00)
mm_114040.1	chr13	53441810	53442010	+	1	NA	NA	NA	30870	NM_013601	17702	Mm.1763	NM_013601	ENSMUSG00000021469	Msx2	BB122635|Hox-8|Hox8|Hox8.1	msh homeobox 2	protein-coding	0.005000	0.502488	
mm_21413.1	chr2	158123835	158124035	-	1	NA	NA	NA	22457	NM_009373	21817	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.010000	0.447761	
mm_129058.1	chr15	75566815	75567015	-	1	NA	NA	NA	-59	NM_001135688	23934	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	0.135000	0.766169	
mm_42979.1	chr5	123177441	123177641	+	1	NA	NA	NA	5145	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.005000	0.492537	
mm_117930.1	chr13	99434226	99434426	-	1	NA	NA	NA	-21500	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.452736	
mm_128489.1	chr15	51652461	51652661	-	1	NA	NA	NA	212900	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.010000	0.412935	
mm_155568.1	chrX	76393267	76393467	+	1	NA	NA	NA	17	NM_001033799	619294	Mm.423961	NM_001033799	ENSMUSG00000073085	Cldn34b4	4930428D18Rik	claudin 34B4	protein-coding	0.005000	0.437811	
mm_154404.1	chrM	14196	14396	+	1	NA	NA	NA	NA	NA									0.025000	0.402985	
mm_163163.1	chr11	85177905	85178105	+	1	NA	NA	NA	6909	NM_028589	73634	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0.020000	0.582090	
mm_49120.1	chr6	8509819	8510019	+	1	NA	NA	NA	319	NM_133236	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.170000	0.805970	
mm_56538.1	chr6	99667339	99667539	-	1	NA	NA	NA	-668	NM_025829	66892	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.020000	0.527363	
mm_50000.1	chr6	41048237	41048437	+	1	NA	NA	NA	-12828	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.467662	
mm_115128.1	chr13	104287416	104287616	+	1	NA	NA	NA	-319	NR_136938	108154	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.025000	0.388060	-34(TCTTTAAAACTC,+,0.00)
mm_90710.1	chr10	3755111	3755311	-	1	NA	NA	NA	14834	NM_001159942	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.005000	0.402985	
mm_90946.1	chr10	12974596	12974796	-	1	NA	NA	NA	-10437	NM_001163591	74732	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.015000	0.412935	72(AACTTTAAAAGA,-,0.00)
mm_84946.1	chr9	83112483	83112683	-	1	NA	NA	NA	34024	NM_175074	94353	Mm.244426	NM_026122	ENSMUSG00000066456	Hmgn3	1110002A15Rik|6330514M13Rik|BB071015|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding	0.015000	0.477612	
mm_142539.1	chr17	46552783	46552983	-	1	NA	NA	NA	1006	NR_105942	102466778		NR_105942	ENSMUSG00000106514	Mir6976	mmu-mir-6976	microRNA 6976	ncRNA	0.020000	0.522388	-91(GCCTTTAGGGTG,+,0.00)
mm_70288.1	chr8	3655708	3655908	+	1	NA	NA	NA	38	NM_022984	57264	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0.010000	0.547264	
mm_51067.1	chr6	66267607	66267807	+	1	NA	NA	NA	-4798	NR_136927	102633773	Mm.272086	NR_136927	ENSMUSG00000107653	Gm31520	-	sterol-C5-desaturase pseudogene	pseudo	0.000000	0.353234	
mm_93034.1	chr10	88336077	88336277	-	1	NA	NA	NA	20898	NM_027878	71712	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.005000	0.557214	
mm_170373.1	chr18	54699261	54699461	-	1	NA	NA	NA	87617	NR_045400	328957	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	0.040000	0.467662	
mm_4274.1	chr1	171559159	171559359	+	1	NA	NA	NA	66	NM_018729	18106	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0.010000	0.537313	
mm_5277.1	chr1	20166988	20167188	-	1	NA	NA	NA	-189366	NR_045734	75028	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	0.000000	0.333333	
mm_112090.1	chr12	112674732	112674932	-	1	NA	NA	NA	52	NM_001331107	11651	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.025000	0.601990	
mm_163529.1	chr13	8952764	8952964	+	1	NA	NA	NA	1	NM_177197	320581	Mm.313743	NM_177197	ENSMUSG00000033520	Idi2	4833405L16Rik|IPPI2	isopentenyl-diphosphate delta isomerase 2	protein-coding	0.000000	0.462687	
mm_114447.1	chr13	66932690	66932890	+	1	NA	NA	NA	-40	NM_008959	19210	Mm.281464	NM_008959	ENSMUSG00000021518	Ptdss1	AU044268|AW539008|PSS-1|mKIAA0024	phosphatidylserine synthase 1	protein-coding	0.065000	0.552239	
mm_34789.1	chr4	154237460	154237660	+	1	NA	NA	NA	62335	NM_001112744	230972	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.020000	0.601990	-33(GACCATAAAGGC,-,0.00)
mm_147743.1	chr18	61109728	61109928	-	1	NA	NA	NA	4256	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.025000	0.547264	
mm_142788.1	chr17	50164045	50164245	-	1	NA	NA	NA	26352	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.010000	0.427861	
mm_133570.1	chr16	91406102	91406302	+	1	NA	NA	NA	-33	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.080000	0.691542	
mm_124293.1	chr14	103054830	103055030	-	1	NA	NA	NA	7918	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.035000	0.572139	69(AGCTCTTAAAGG,-,0.00),70(GCTCTTAAAGGC,+,0.00),71(CTCTTAAAGGCC,+,0.00)
mm_163785.1	chr13	120300230	120300430	+	1	NA	NA	NA	-62	NM_001037925	625360	Mm.327506	NM_001037925	ENSMUSG00000094796	BC147527	-	cDNA sequence BC147527	protein-coding	0.005000	0.502488	
mm_50447.1	chr6	48895154	48895354	+	1	NA	NA	NA	-1	NM_029638	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.015000	0.552239	
mm_156098.1	chrX	112512330	112512530	+	1	NA	NA	NA	17156	NM_001168590	67715	Mm.45323	NM_026333	ENSMUSG00000025528	2010106E10Rik	-	RIKEN cDNA 2010106E10 gene	protein-coding	0.005000	0.427861	
mm_71615.1	chr8	57320884	57321084	+	1	NA	NA	NA	1	NM_010402	15111	Mm.430844	NM_010402	ENSMUSG00000038193	Hand2	AI225906|AI661148|Ehand2|Hed|Th2|Thing2|bHLHa26|dHAND	heart and neural crest derivatives expressed transcript 2	protein-coding	0.100000	0.636816	
mm_68207.1	chr7	104400633	104400833	-	1	NA	NA	NA	-42087	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.000000	0.432836	
mm_30345.1	chr3	151742224	151742424	-	1	NA	NA	NA	7635	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.000000	0.368159	
mm_125592.1	chr15	59648327	59648527	+	1	NA	NA	NA	-227	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.105000	0.731343	
mm_20561.1	chr2	131074924	131075124	-	1	NA	NA	NA	-11210	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.015000	0.582090	
mm_77371.1	chr8	119822644	119822844	-	1	NA	NA	NA	17835	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.070000	0.592040	
mm_82535.1	chr9	20746229	20746429	-	1	NA	NA	NA	-18115	NM_173777	244723	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.150000	0.825871	
mm_26967.1	chr3	24138029	24138229	-	1	NA	NA	NA	645877	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.005000	0.313433	
mm_8028.1	chr1	135131651	135131851	-	1	NA	NA	NA	824	NM_007955	13924	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP|mOST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	0.020000	0.552239	
mm_167688.1	chr9	86467862	86468062	+	1	NA	NA	NA	808	NM_177208	320615	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0.015000	0.338308	
mm_99745.1	chr11	106530278	106530478	+	1	NA	NA	NA	29387	NR_030703	100216537		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.015000	0.532338	
mm_142309.1	chr17	42823324	42823524	-	1	NA	NA	NA	53000	NM_009847	12488	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.015000	0.363184	
mm_92884.1	chr10	82763827	82764027	-	1	NA	NA	NA	214	NM_010914	18045	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	0.125000	0.681592	
mm_163398.1	chr12	70808853	70809053	+	1	NA	NA	NA	-16561	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.010000	0.442786	64(GGCTATATATAC,-,0.00)
mm_66862.1	chr7	56019392	56019592	-	1	NA	NA	NA	81	NM_153578	233280	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	0.145000	0.756219	68(CGCGCTAAAAGG,-,0.00)
mm_768.1	chr1	44119869	44120069	+	1	NA	NA	NA	1	NM_144558	246229	Mm.386883	NM_144558	ENSMUSG00000041684	Bivm	AI854267	basic, immunoglobulin-like variable motif containing	protein-coding	0.050000	0.656716	
mm_21707.1	chr2	164589476	164589676	-	1	NA	NA	NA	3995	NM_029325	75526	Mm.159533	NM_029325	ENSMUSG00000017733	Eppin	1700024E17Rik|Spinlw1	epididymal peptidase inhibitor	protein-coding	0.055000	0.537313	
mm_67783.1	chr7	97413499	97413699	-	1	NA	NA	NA	3951	NM_009381	21835	Mm.28585	NM_009381	ENSMUSG00000035686	Thrsp	S14|SPOT14	thyroid hormone responsive	protein-coding	0.015000	0.358209	-76(GCTTTTATGCCT,+,0.00),55(GACTATTTAAAC,-,0.00)
mm_111709.1	chr12	103695347	103695547	-	1	NA	NA	NA	82	NM_026687	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding	0.030000	0.577114	
mm_119567.1	chr14	49172128	49172328	+	1	NA	NA	NA	-18	NM_027492	70646	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	0.150000	0.741294	-92(CCTTTTCTGGCC,+,0.00)
mm_160954.1	chr11	98149948	98150148	-	1	NA	NA	NA	-432	NM_028149	72194	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	0.060000	0.626866	
mm_162037.1	chr19	55917466	55917666	+	1	NA	NA	NA	22245	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.040000	0.562189	
mm_151825.1	chr19	5638780	5638980	-	1	NA	NA	NA	1390	NM_009045	19697	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.020000	0.547264	
mm_49388.1	chr6	24857910	24858110	+	1	NA	NA	NA	13	NM_028957	74468	Mm.251601	NM_028957	ENSMUSG00000029678	Hyal5	4933439A12Rik	hyaluronoglucosaminidase 5	protein-coding	0.000000	0.437811	
mm_37968.1	chr4	133497680	133497880	-	1	NA	NA	NA	770	NM_001081156	69539	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	0.120000	0.761194	
mm_94773.1	chr11	21244204	21244404	+	1	NA	NA	NA	5272	NM_001290628	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.005000	0.333333	
mm_118479.1	chr14	11814427	11814627	+	1	NA	NA	NA	260974	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.010000	0.323383	
mm_88524.1	chr10	78057201	78057401	+	1	NA	NA	NA	1966	NM_001284200	54427	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.030000	0.582090	
mm_99036.1	chr11	98960469	98960669	+	1	NA	NA	NA	98	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.100000	0.731343	
mm_88350.1	chr10	75853502	75853702	+	1	NA	NA	NA	6648	NM_010798	17319	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor	protein-coding	0.035000	0.482587	
mm_90416.1	chr10	127471685	127471885	+	1	NA	NA	NA	-29932	NM_177707	237611	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0.030000	0.616915	
mm_122372.1	chr14	39473382	39473582	-	1	NA	NA	NA	-394	NM_008734	18183	Mm.258705	NM_008734	ENSMUSG00000041014	Nrg3	ska	neuregulin 3	protein-coding	0.110000	0.681592	
mm_110875.1	chr12	73949704	73949904	-	1	NA	NA	NA	-14726	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.105000	0.706468	
mm_135920.1	chr16	67620828	67621028	-	1	NA	NA	NA	-20	NM_178721	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.095000	0.716418	
mm_173326.1	chrY	90768307	90768507	-	1	NA	NA	NA	-13357	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.025000	0.681592	
mm_98195.1	chr11	87794697	87794897	+	1	NA	NA	NA	1013	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.005000	0.572139	
mm_163634.1	chr13	59510223	59510423	+	1	NA	NA	NA	34128	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.010000	0.492537	
mm_54731.1	chr6	40900281	40900481	-	1	NA	NA	NA	6	NM_175020	232717	Mm.56997	NM_175020	ENSMUSG00000051936	Prss58	1700020H15|Tryx3	protease, serine 58	protein-coding	0.005000	0.467662	
mm_132211.1	chr16	32613443	32613643	+	1	NA	NA	NA	4647	NM_011638	22042	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0.000000	0.363184	
mm_39595.1	chr5	23501861	23502061	+	1	NA	NA	NA	67532	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.015000	0.487562	
mm_36035.1	chr4	57240899	57241099	-	1	NA	NA	NA	60838	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.035000	0.557214	-84(TTATTTAAAAGC,-,0.00)
mm_136708.1	chr17	7925898	7926098	+	1	NA	NA	NA	-2	NM_145968	72536	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik	T cell activation Rho GTPase activating protein	protein-coding	0.030000	0.547264	
mm_139883.1	chr17	70755988	70756188	+	1	NA	NA	NA	90689	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.015000	0.532338	54(GGCCTGAAAAGG,-,0.00)
mm_18354.1	chr2	58163658	58163858	-	1	NA	NA	NA	-216	NR_045896	100042926	Mm.446515	NR_045895	ENSMUSG00000086862	Gm13546	OTTMUSG00000012675	predicted gene 13546	ncRNA	0.000000	0.547264	
mm_38431.1	chr4	139345908	139346108	-	1	NA	NA	NA	6568	NM_001290810	69902	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	0.050000	0.567164	
mm_57705.1	chr6	128543257	128543457	-	1	NA	NA	NA	-16637	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.030000	0.527363	
mm_117688.1	chr13	94285212	94285412	-	1	NA	NA	NA	-31	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.150000	0.716418	
mm_118338.1	chr13	114387973	114388173	-	1	NA	NA	NA	21	NM_010887	17993	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	0.070000	0.557214	
mm_45924.1	chr5	89443383	89443583	-	1	NA	NA	NA	14415	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.020000	0.537313	86(GTCTTTATAAGT,-,0.00)
mm_44627.1	chr5	26493180	26493380	-	1	NA	NA	NA	34	NR_029445	75942	Mm.50087	NR_029445	ENSMUSG00000029044	4930584F24Rik	1700001J09Rik|4930522C06Rik	RIKEN cDNA 4930584F24 gene	ncRNA	0.005000	0.482587	
mm_67573.1	chr7	81992196	81992396	-	1	NA	NA	NA	3	NM_007562	12173	Mm.243802	NM_007562	ENSMUSG00000025105	Bnc1	AI047752|AW546376|Bnc	basonuclin 1	protein-coding	0.155000	0.810945	
mm_20933.1	chr2	150856053	150856253	-	1	NA	NA	NA	48578	NM_024465	76192	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.020000	0.507463	
mm_9082.1	chr1	168431772	168431972	-	1	NA	NA	NA	297	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.030000	0.462687	
mm_64042.1	chr7	140773573	140773773	+	1	NA	NA	NA	9841	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.005000	0.368159	
mm_22763.1	chr3	20057730	20057930	+	1	NA	NA	NA	19	NM_009210	20585	Mm.209650	NM_009210	ENSMUSG00000002428	Hltf	AF010600|BC057116|P113|Smarca3|Snf2l3	helicase-like transcription factor	protein-coding	0.080000	0.587065	
mm_56089.1	chr6	87335664	87335864	-	1	NA	NA	NA	11	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.030000	0.442786	
mm_81735.1	chr9	113756735	113756935	+	1	NA	NA	NA	15362	NM_001114347	76499	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.015000	0.482587	56(CCTTTAATGAGG,+,0.00)
mm_139940.1	chr17	71182493	71182693	+	1	NA	NA	NA	-1385	NM_022882	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.015000	0.467662	
mm_136878.1	chr17	13007872	13008072	+	1	NA	NA	NA	133	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.140000	0.681592	
mm_90236.1	chr10	121392708	121392908	+	1	NA	NA	NA	27718	NM_029364	75612	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.020000	0.532338	
mm_124133.1	chr14	84476319	84476519	-	1	NA	NA	NA	5	NR_015539	319903	Mm.440481	NR_015539		9630013A20Rik	-	RIKEN cDNA 9630013A20 gene	ncRNA	0.030000	0.457711	
mm_116787.1	chr13	53373682	53373882	-	1	NA	NA	NA	3579	NM_009269	268656	Mm.240336	NM_009269	ENSMUSG00000021468	Sptlc1	AW552086|C77762|E030036H05|Lcb1	serine palmitoyltransferase, long chain base subunit 1	protein-coding	0.020000	0.497512	
mm_48406.1	chr5	140261432	140261632	-	1	NA	NA	NA	60020	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.015000	0.537313	
mm_20898.1	chr2	149003213	149003413	-	1	NA	NA	NA	-127801	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.000000	0.467662	-27(CAGCATTTAAGG,-,0.00),-25(GCATTTAAGGCA,+,0.00)
mm_135941.1	chr16	74301294	74301494	-	1	NA	NA	NA	40673	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.000000	0.243781	31(TGCTTTATAAGT,-,0.00)
mm_145129.1	chr18	44571055	44571255	+	1	NA	NA	NA	-90510	NR_026853	626275	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	0.020000	0.552239	
mm_92661.1	chr10	80419457	80419657	-	1	NA	NA	NA	-12736	NM_025650	66594	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0.025000	0.616915	
mm_114836.1	chr13	92530847	92531047	+	1	NA	NA	NA	-137	NM_173392	218441	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	0.100000	0.676617	
mm_125159.1	chr15	31224368	31224568	+	1	NA	NA	NA	83	NM_146057	223453	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.140000	0.731343	
mm_24937.1	chr3	96560208	96560408	+	1	NA	NA	NA	2351	NM_023719	56338	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.015000	0.512438	
mm_128619.1	chr15	58933617	58933817	-	1	NA	NA	NA	13	NM_175151	69694	Mm.383230	NM_175151	ENSMUSG00000050891	Tatdn1	2310079P03Rik|CDA11	TatD DNase domain containing 1	protein-coding	0.110000	0.671642	
mm_89965.1	chr10	111473094	111473294	+	1	NA	NA	NA	2	NM_015781	53605	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.130000	0.701493	
mm_52553.1	chr6	115995005	115995205	+	1	NA	NA	NA	-100	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.080000	0.681592	
mm_158947.1	chr1	85270449	85270649	-	1	NA	NA	NA	17	NM_175219	620078	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik|OTTMUSG00000029174	RIKEN cDNA C130026I21 gene	protein-coding	0.015000	0.512438	
mm_66591.1	chr7	45422354	45422554	-	1	NA	NA	NA	1508	NM_008497	16866	Mm.57061	NM_008497	ENSMUSG00000100916	Lhb	Gm29035|LH|LH-B|LSH-B|LSH-beta	luteinizing hormone beta	protein-coding	0.040000	0.597015	
mm_21497.1	chr2	163419040	163419240	-	1	NA	NA	NA	330	NM_025699	66680	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	0.115000	0.706468	
mm_164899.1	chr18	66059453	66059653	-	1	NA	NA	NA	-56918	NM_001172062	70361	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	0.005000	0.512438	
mm_28716.1	chr3	95658545	95658745	-	1	NA	NA	NA	-76	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.125000	0.686567	
mm_91889.1	chr10	59951389	59951589	-	1	NA	NA	NA	281	NM_029083	74747	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.090000	0.641791	
mm_110249.1	chr12	31499786	31499986	-	1	NA	NA	NA	-270	NM_001253848	104836	Mm.273270	NM_134048	ENSMUSG00000020659	Cbll1	AI467391|Hakai|c-Cbl-like	Casitas B-lineage lymphoma-like 1	protein-coding	0.095000	0.656716	
mm_96579.1	chr11	69070723	69070923	+	1	NA	NA	NA	14	NM_028336	66910	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	0.080000	0.611940	
mm_97709.1	chr11	80178617	80178817	+	1	NA	NA	NA	-5155	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.010000	0.502488	
mm_135719.1	chr16	55818365	55818565	-	1	NA	NA	NA	3673	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.030000	0.532338	
mm_96952.1	chr11	70564237	70564437	+	1	NA	NA	NA	1456	NM_016713	50932	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	0.005000	0.393035	
mm_22097.1	chr2	168970021	168970221	-	1	NA	NA	NA	-8148	NR_040326	75508	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.035000	0.542289	
mm_47769.1	chr5	131538603	131538803	-	1	NA	NA	NA	-231181	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.125000	0.741294	
mm_108690.1	chr12	86895164	86895364	+	1	NA	NA	NA	-10450	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.020000	0.547264	
mm_160906.1	chr11	77842338	77842538	+	1	NA	NA	NA	41140	NM_001291215	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.025000	0.577114	
mm_134348.1	chr16	16571360	16571560	-	1	NA	NA	NA	-11241	NM_139232	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.010000	0.417910	
mm_92784.1	chr10	81291114	81291314	-	1	NA	NA	NA	53	NM_013769	27375	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.060000	0.646766	
mm_109154.1	chr12	108178390	108178590	+	1	NA	NA	NA	794	NM_028262	52690	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0.080000	0.616915	
mm_60525.1	chr7	44479997	44480197	+	1	NA	NA	NA	-4420	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.467662	
mm_28884.1	chr3	97868052	97868252	-	1	NA	NA	NA	20555	NM_001289702	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.100000	0.666667	
mm_152584.1	chr19	11603332	11603532	-	1	NA	NA	NA	1372	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.000000	0.353234	
mm_50689.1	chr6	51588111	51588311	+	1	NA	NA	NA	43688	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.015000	0.447761	
mm_171185.1	chr3	39189732	39189932	-	1	NA	NA	NA	302892	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.030000	0.527363	
mm_141776.1	chr17	34287907	34288107	-	1	NA	NA	NA	-236	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.010000	0.517413	
mm_32440.1	chr4	107253815	107254015	+	1	NA	NA	NA	-19	NM_028394	72938	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25	heat shock protein family B (small), member 11	protein-coding	0.140000	0.771144	
mm_31723.1	chr4	62674242	62674442	+	1	NA	NA	NA	368	NM_001310706	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.065000	0.646766	-27(GTCCATAAATAG,-,0.00),-25(CCATAAATAGCT,+,0.00)
mm_12060.1	chr2	59351802	59352002	+	1	NA	NA	NA	34780	NR_040510	76676	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.030000	0.567164	
mm_162888.1	chr10	107719877	107720077	-	1	NA	NA	NA	50	NM_001081432	237523	Mm.391418	NM_001081432	ENSMUSG00000035916	Ptprq	-	protein tyrosine phosphatase, receptor type, Q	protein-coding	0.000000	0.393035	
mm_100546.1	chr11	120707981	120708181	+	1	NA	NA	NA	5686	NM_016665	20892	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0.020000	0.547264	
mm_67474.1	chr7	80503256	80503456	-	1	NA	NA	NA	31642	NM_007550	12144	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ helicase-like	protein-coding	0.015000	0.442786	
mm_20834.1	chr2	147186274	147186474	-	1	NA	NA	NA	28	NM_001077632	18088	Mm.330639	NM_010919	ENSMUSG00000027434	Nkx2-2	Nkx-2.2|Nkx2.2|tinman	NK2 homeobox 2	protein-coding	0.095000	0.691542	-62(CCTTATATGGAC,+,0.00)
mm_101245.1	chr11	20741386	20741586	-	1	NA	NA	NA	70	NM_001290545	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.110000	0.731343	
mm_109489.1	chr12	111442561	111442761	+	1	NA	NA	NA	0	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.070000	0.631841	
mm_38302.1	chr4	136896281	136896481	-	1	NA	NA	NA	2463	NM_007572	12259	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	0.020000	0.532338	
mm_52870.1	chr6	122340666	122340866	+	1	NA	NA	NA	-539	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.010000	0.432836	
mm_116156.1	chr13	30545200	30545400	-	1	NA	NA	NA	16	NM_025710	66694	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0.160000	0.671642	
mm_116230.1	chr13	33158306	33158506	-	1	NA	NA	NA	-55	NM_011453	20707	Mm.219429	NM_011453	ENSMUSG00000021404	Serpinb9c	3830421J05Rik|Nk9|Spi11	serine (or cysteine) peptidase inhibitor, clade B, member 9c	protein-coding	0.025000	0.542289	
mm_114334.1	chr13	60672898	60673098	+	1	NA	NA	NA	70787	NM_134062	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.035000	0.507463	
mm_105306.1	chr11	102697634	102697834	-	1	NA	NA	NA	-9	NM_025918	52715	Mm.277638	NM_025918	ENSMUSG00000020925	Ccdc43	2610001E01Rik|D11Ertd707e	coiled-coil domain containing 43	protein-coding	0.110000	0.731343	
mm_130545.1	chr15	98953548	98953748	-	1	NA	NA	NA	-147	NM_011653	22142	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	0.035000	0.582090	64(CTGTATATAAGG,-,0.00)
mm_157178.1	chrX	9655855	9656055	-	1	NA	NA	NA	7028	NM_025975	67117	Mm.29150	NM_025975	ENSMUSG00000031176	Dynlt3	2310075M16Rik|AU042796|Tcte1l	dynein light chain Tctex-type 3	protein-coding	0.015000	0.383085	
mm_58310.1	chr6	146254450	146254650	-	1	NA	NA	NA	247673	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.005000	0.383085	
mm_38675.1	chr4	144903874	144904074	-	1	NA	NA	NA	10837	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.015000	0.532338	15(GCTTATTAAAGG,-,0.00)
mm_30429.1	chr3	152982146	152982346	-	1	NA	NA	NA	-39	NM_012028	26938	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.055000	0.606965	
mm_17235.1	chr2	25581521	25581721	-	1	NA	NA	NA	-1522	NM_001005424	381353	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	-	predicted gene 996	protein-coding	0.040000	0.557214	
mm_131701.1	chr16	20717706	20717906	+	1	NA	NA	NA	-20	NM_145632	245841	Mm.288730	NM_145632	ENSMUSG00000021018	Polr2h	-	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding	0.100000	0.666667	
mm_111474.1	chr12	98606716	98606916	-	1	NA	NA	NA	-21326	NM_001289573	104871	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	0.000000	0.467662	
mm_46041.1	chr5	91963022	91963222	-	1	NA	NA	NA	-54	NM_001271797	68098	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0.135000	0.726368	
mm_154479.1	chrM	4271	4471	-	1	NA	NA	NA	NA	NA									0.010000	0.353234	
mm_80933.1	chr9	102626552	102626752	+	1	NA	NA	NA	356	NM_181394	69010	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	0.055000	0.517413	
mm_103586.1	chr11	78189291	78189491	-	1	NA	NA	NA	643	NM_033475	19376	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	0.085000	0.726368	
mm_157950.1	chrX	87172793	87172993	-	1	NA	NA	NA	-817899	NR_036689	245502	Mm.490821	NR_036689		Gm41	-	melanoma antigen, family B, 4 pseudogene	pseudo	0.005000	0.472637	-17(TGCTATAAAGGG,-,0.00)
mm_53691.1	chr6	142677441	142677641	+	1	NA	NA	NA	24733	NM_021041	20928	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0.005000	0.522388	
mm_7586.1	chr1	125434432	125434632	-	1	NA	NA	NA	1195	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.035000	0.407960	
mm_117925.1	chr13	99434100	99434300	-	1	NA	NA	NA	-21374	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.010000	0.402985	
mm_164090.1	chr15	9155247	9155447	-	1	NA	NA	NA	78	NM_001285980	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.015000	0.537313	
mm_100931.1	chr11	6519405	6519605	-	1	NA	NA	NA	1453	NM_178440	246177	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0.015000	0.587065	
mm_50385.1	chr6	48690585	48690785	+	1	NA	NA	NA	6107	NM_174990	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.010000	0.492537	
mm_133893.1	chr16	97511858	97512058	+	1	NA	NA	NA	-7022	NM_020622	52793	Mm.327932	NM_020622	ENSMUSG00000022938	Fam3b	2-21|9030624C24Rik|D16Jhu19e|ORF9|Pander	family with sequence similarity 3, member B	protein-coding	0.000000	0.497512	
mm_160027.1	chr6	130380882	130381082	-	1	NA	NA	NA	-174	NM_053152	93969	Mm.333431	NM_053152		Klra22	Ly49v	killer cell lectin-like receptor subfamily A, member 22	protein-coding	0.000000	0.288557	
mm_127530.1	chr15	102100275	102100475	+	1	NA	NA	NA	-2613	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.140000	0.771144	
mm_59625.1	chr7	28154604	28154804	+	1	NA	NA	NA	-15044	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.025000	0.552239	
mm_54858.1	chr6	42594019	42594219	-	1	NA	NA	NA	3253	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.035000	0.542289	
mm_19410.1	chr2	91696118	91696318	-	1	NA	NA	NA	14374	NM_145528	51897	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	0.005000	0.427861	
mm_20862.1	chr2	148438305	148438505	-	1	NA	NA	NA	5130	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.005000	0.467662	
mm_124091.1	chr14	79151686	79151886	-	1	NA	NA	NA	95581	NM_001033215	105590	Mm.486536	NM_001033215	ENSMUSG00000071262	Zfp957	AU017455	zinc finger protein 957	protein-coding	0.015000	0.407960	
mm_125170.1	chr15	31338861	31339061	+	1	NA	NA	NA	28798	NM_001164441	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.020000	0.492537	
mm_37351.1	chr4	120033273	120033473	-	1	NA	NA	NA	-127833	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.025000	0.557214	
mm_147766.1	chr18	61375298	61375498	-	1	NA	NA	NA	25033	NM_133249	170826	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0.000000	0.432836	
mm_65970.1	chr7	30438122	30438322	-	1	NA	NA	NA	7360	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.030000	0.577114	
mm_51545.1	chr6	83237441	83237641	+	1	NA	NA	NA	166	NM_001166067	232156	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	0.025000	0.527363	
mm_10193.1	chr2	4922521	4922721	+	1	NA	NA	NA	3625	NM_010726	16922	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.025000	0.497512	
mm_119546.1	chr14	48446171	48446371	+	1	NA	NA	NA	-81	NM_172600	218989	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	0.080000	0.616915	
mm_65965.1	chr7	30435291	30435491	-	1	NA	NA	NA	10191	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.030000	0.616915	
mm_147061.1	chr18	34954182	34954382	-	1	NA	NA	NA	69	NM_010481	15526	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.100000	0.716418	
mm_60720.1	chr7	45335205	45335405	+	1	NA	NA	NA	36	NM_010473	15464	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.005000	0.542289	
mm_148295.1	chr18	82585345	82585545	-	1	NA	NA	NA	30937	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.025000	0.447761	
mm_100822.1	chr11	5261503	5261703	-	1	NA	NA	NA	7	NM_032396	84035	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	0.160000	0.860697	
mm_37634.1	chr4	127358102	127358302	-	1	NA	NA	NA	-38	NM_010291	14622	Mm.26859	NM_010291	ENSMUSG00000042357	Gjb5	Cnx31.1|Cx31.1|Gjb-5	gap junction protein, beta 5	protein-coding	0.010000	0.567164	
mm_76512.1	chr8	86911173	86911373	-	1	NA	NA	NA	-26015	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.020000	0.472637	-37(GAGTATAAATAG,-,0.00)
mm_60471.1	chr7	44478012	44478212	+	1	NA	NA	NA	-6405	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.462687	
mm_35974.1	chr4	53339731	53339931	-	1	NA	NA	NA	-69599	NR_033139	381524	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0.010000	0.472637	
mm_20897.1	chr2	148875532	148875732	-	1	NA	NA	NA	-120	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.035000	0.597015	-10(CTCTTTAAGAGG,-,0.00)
mm_169895.1	chr16	48283696	48283896	+	1	NA	NA	NA	61	NM_001018002	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding	0.015000	0.467662	
mm_64946.1	chr7	16368597	16368797	-	1	NA	NA	NA	19199	NM_001285892	56459	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	0.005000	0.462687	
mm_83851.1	chr9	54501820	54502020	-	1	NA	NA	NA	-294	NM_172771	235380	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.155000	0.741294	
mm_145393.1	chr18	57142625	57142825	+	1	NA	NA	NA	9635	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.005000	0.452736	
mm_12988.1	chr2	90885355	90885555	+	1	NA	NA	NA	-331	NM_026161	67445	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0.010000	0.507463	
mm_75097.1	chr8	34108366	34108566	-	1	NA	NA	NA	246	NM_001293759	22428	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.075000	0.611940	
mm_52677.1	chr6	117916917	117917117	+	1	NA	NA	NA	-277	NM_001166427	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.090000	0.661692	
mm_130928.1	chr15	103101867	103102067	-	1	NA	NA	NA	44861	NR_045743	432989	Mm.383979	NR_045743	ENSMUSG00000097003	D930007P13Rik	-	Riken cDNA D930007P13 gene	ncRNA	0.020000	0.547264	
mm_106061.1	chr11	116130987	116131187	-	1	NA	NA	NA	41	NM_178802	338364	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0.060000	0.626866	42(GCCCCTTTAAGA,-,0.00),44(CCCTTTAAGAGA,-,0.00),45(CCTTTAAGAGAT,+,0.00)
mm_156039.1	chrX	107792496	107792696	+	1	NA	NA	NA	6	NM_001271008	213449	Mm.444635	NM_001163104	ENSMUSG00000073007	Fam46d	Gm377	family with sequence similarity 46, member D	protein-coding	0.005000	0.358209	
mm_55116.1	chr6	50393984	50394184	-	1	NA	NA	NA	-11247	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.020000	0.512438	
mm_157303.1	chrX	20929609	20929809	-	1	NA	NA	NA	1846	NM_008823	18636	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	0.015000	0.567164	
mm_28226.1	chr3	88453323	88453523	-	1	NA	NA	NA	2338	NM_013658	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.015000	0.572139	
mm_127181.1	chr15	98983641	98983841	+	1	NA	NA	NA	-2224	NR_045991	75951	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.035000	0.517413	
mm_52537.1	chr6	115931757	115931957	+	1	NA	NA	NA	-70	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.040000	0.587065	18(CACTTTATAAGG,-,0.00),20(CTTTATAAGGGT,+,0.00)
mm_28260.1	chr3	88571760	88571960	-	1	NA	NA	NA	-7811	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.000000	0.497512	
mm_147130.1	chr18	36103088	36103288	-	1	NA	NA	NA	-3015	NR_015571	74966	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA	0.010000	0.348259	
mm_95152.1	chr11	35769495	35769695	+	1	NA	NA	NA	100	NM_145962	211347	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0.125000	0.736318	
mm_99675.1	chr11	105975110	105975310	+	1	NA	NA	NA	2	NM_009598	11421	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0.015000	0.606965	
mm_161042.1	chr12	33928316	33928516	+	1	NA	NA	NA	-9	NM_033522	114712	Mm.204643	NM_033522	ENSMUSG00000046518	Ferd3l	Mnato3|N-twist|Nato|Nato3|Ntwist|Ptfb|bHLHa31|fer3	Fer3-like (Drosophila)	protein-coding	0.035000	0.507463	
mm_118315.1	chr13	113135935	113136135	-	1	NA	NA	NA	-41	NR_131045	76720	Mm.54263	NR_131045		1700084D21Rik	-	RIKEN cDNA 1700084D21 gene	ncRNA	0.010000	0.502488	-26(GCATATATAGAC,+,0.00)
mm_129679.1	chr15	81399655	81399855	-	1	NA	NA	NA	-61	NM_133726	70356	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	0.075000	0.641791	
mm_39251.1	chr5	3501949	3502149	+	1	NA	NA	NA	-41784	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.005000	0.402985	-72(ACCTTTAGAGCC,+,0.00),-14(CTGCTTATAAGC,-,0.00),-12(GCTTATAAGCCT,+,0.00)
mm_30427.1	chr3	152973534	152973734	-	1	NA	NA	NA	8573	NM_012028	26938	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.000000	0.462687	
mm_69569.1	chr7	135700700	135700900	-	1	NA	NA	NA	15579	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.015000	0.442786	
mm_35918.1	chr4	53031465	53031665	-	1	NA	NA	NA	19685	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.005000	0.298507	
mm_81958.1	chr9	120821012	120821212	+	1	NA	NA	NA	94138	NR_040742	76402	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0.020000	0.537313	
mm_75514.1	chr8	54529879	54530079	-	1	NA	NA	NA	19	NM_029701	76687	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.135000	0.736318	
mm_54328.1	chr6	30610807	30611007	-	1	NA	NA	NA	-103	NM_144537	74649	Mm.159276	NM_144537	ENSMUSG00000029788	Cpa5	4930430M09Rik	carboxypeptidase A5	protein-coding	0.025000	0.447761	
mm_39857.1	chr5	30921782	30921982	+	1	NA	NA	NA	323	NM_001310524	16548	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0.020000	0.582090	
mm_139754.1	chr17	63937862	63938062	+	1	NA	NA	NA	-10	NM_008000	14158	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.075000	0.606965	
mm_93107.1	chr10	91082557	91082757	-	1	NA	NA	NA	86	NM_001042558	11783	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	0.095000	0.686567	
mm_149049.1	chr19	8837402	8837602	+	1	NA	NA	NA	35	NM_001136064	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.095000	0.706468	
mm_103324.1	chr11	73326732	73326932	-	1	NA	NA	NA	-2195	NM_023113	11484	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	0.040000	0.472637	
mm_147772.1	chr18	61484474	61484674	-	1	NA	NA	NA	33	NR_045419	442846	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.030000	0.557214	-68(GACTTTAAATAG,-,0.00),-66(CTTTAAATAGCA,+,0.00)
mm_120749.1	chr14	73238963	73239163	+	1	NA	NA	NA	1172	NM_175116	67168	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.030000	0.442786	
mm_111691.1	chr12	103631324	103631524	-	1	NA	NA	NA	20	NM_001301404	217847	Mm.29094	NM_144834	ENSMUSG00000061947	Serpina10	PZI|ZPI	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10	protein-coding	0.005000	0.522388	
mm_143766.1	chr17	81629255	81629455	-	1	NA	NA	NA	109032	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.000000	0.298507	
mm_864.1	chr1	52150528	52150728	+	1	NA	NA	NA	31006	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.010000	0.457711	
mm_25341.1	chr3	106721759	106721959	+	1	NA	NA	NA	177	NM_001286685	321000	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	0.065000	0.606965	
mm_94919.1	chr11	29499443	29499643	+	1	NA	NA	NA	15490	NM_026465	67939	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0.000000	0.303483	
mm_37774.1	chr4	129821091	129821291	-	1	NA	NA	NA	483	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.035000	0.432836	
mm_86789.1	chr10	20204780	20204980	+	1	NA	NA	NA	-3026	NR_045350	73811	Mm.55644	NR_045350	ENSMUSG00000110754	4930405J17Rik	-	RIKEN cDNA 4930405J17 gene	ncRNA	0.035000	0.507463	
mm_161692.1	chr17	22361362	22361562	+	1	NA	NA	NA	9	NM_145484	224598	Mm.390945	NM_145484	ENSMUSG00000044501	Zfp758	BC021442	zinc finger protein 758	protein-coding	0.075000	0.597015	
mm_146.1	chr1	11089646	11089846	+	1	NA	NA	NA	96281	NM_029525	109294	Mm.123247	NM_029525	ENSMUSG00000048960	Prex2	6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	protein-coding	0.020000	0.487562	
mm_90565.1	chr10	128231292	128231492	+	1	NA	NA	NA	-671	NM_001164080	21853	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0.005000	0.432836	
mm_126828.1	chr15	88862143	88862343	+	1	NA	NA	NA	49	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.160000	0.731343	
mm_73436.1	chr8	106150331	106150531	+	1	NA	NA	NA	32	NM_133792	192654	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.060000	0.587065	
mm_88532.1	chr10	78393203	78393403	+	1	NA	NA	NA	15242	NR_105872	102465547		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	0.030000	0.447761	
mm_56465.1	chr6	98929977	98930177	-	1	NA	NA	NA	98221	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.035000	0.412935	
mm_1170.1	chr1	60913827	60914027	+	1	NA	NA	NA	4902	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.000000	0.412935	
mm_151199.1	chr19	53537423	53537623	+	1	NA	NA	NA	8205	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.040000	0.582090	
mm_155254.1	chrX	57223943	57224143	+	1	NA	NA	NA	11900	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.010000	0.517413	
mm_105056.1	chr11	100704147	100704347	-	1	NA	NA	NA	24	NM_030150	80861	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0.010000	0.457711	
mm_99808.1	chr11	108381099	108381299	+	1	NA	NA	NA	-14098	NM_013475	11818	Mm.2266	NM_013475	ENSMUSG00000000049	Apoh	B2GPI|beta-2-GPI|beta2-GPI	apolipoprotein H	protein-coding	0.010000	0.492537	-51(CCTTTTAGGAGG,+,0.00)
mm_83161.1	chr9	40465707	40465907	-	1	NA	NA	NA	-10043	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.010000	0.467662	
mm_108871.1	chr12	99642996	99643196	+	1	NA	NA	NA	-15122	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.030000	0.547264	
mm_155843.1	chrX	101254381	101254581	+	1	NA	NA	NA	-47	NM_018789	54601	Mm.240299	NM_018789	ENSMUSG00000042903	Foxo4	Afxh|Mllt7|afx	forkhead box O4	protein-coding	0.060000	0.611940	52(AGGTTTAAAAGA,-,0.00)
mm_65670.1	chr7	28291047	28291247	-	1	NA	NA	NA	-13	NM_175033	280621	Mm.212777	NM_175033	ENSMUSG00000046750	Selenov	Selv	selenoprotein V	protein-coding	0.075000	0.621891	
mm_113940.1	chr13	49731383	49731583	+	1	NA	NA	NA	49353	NM_172015	105148	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	0.020000	0.557214	
mm_147804.1	chr18	61658223	61658423	-	1	NA	NA	NA	7215	NR_045402	328968	Mm.392305	NR_045402		Carmn	Carmen|E330013P06|Gm16908|Mir143hg	cardiac mesoderm enhancer-associated non-coding RNA	ncRNA	0.005000	0.522388	
mm_157097.1	chrX	9437281	9437481	-	1	NA	NA	NA	31943	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.412935	
mm_172112.1	chr6	3200850	3201050	+	1	NA	NA	NA	-87569	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.050000	0.527363	
mm_60985.1	chr7	49160328	49160528	+	1	NA	NA	NA	-85761	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.020000	0.497512	
mm_103065.1	chr11	69837684	69837884	-	1	NA	NA	NA	-741	NM_026982	69186	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	0.130000	0.776119	
mm_36632.1	chr4	92147106	92147306	-	1	NA	NA	NA	15	NM_027034	69314	Mm.55891	NM_027034	ENSMUSG00000028533	Izumo3	1700011H22Rik	IZUMO family member 3	protein-coding	0.000000	0.407960	
mm_74443.1	chr8	3926723	3926923	-	1	NA	NA	NA	18	NM_001037800	69165	Mm.175163	NM_026972	ENSMUSG00000065987	Cd209b	1810030I22Rik|DC-SIGNR1|OtB7|SIGNR1|mSIGNR1	CD209b antigen	protein-coding	0.015000	0.547264	
mm_74046.1	chr8	122025701	122025901	+	1	NA	NA	NA	47777	NR_106096	102466915		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	0.015000	0.522388	
mm_37236.1	chr4	118076698	118076898	-	1	NA	NA	NA	58148	NM_001285520	20441	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.000000	0.592040	
mm_67437.1	chr7	80387088	80387288	-	1	NA	NA	NA	758	NM_010194	14159	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.030000	0.601990	
mm_161957.1	chr19	7105696	7105896	-	1	NA	NA	NA	-67	NM_201411	396184	Mm.386930	NM_201411	ENSMUSG00000047787	Flrt1	AW742165|D630040I23Rik	fibronectin leucine rich transmembrane protein 1	protein-coding	0.030000	0.616915	
mm_78453.1	chr9	32312958	32313158	+	1	NA	NA	NA	31179	NM_010605	16521	Mm.69472	NM_010605	ENSMUSG00000032034	Kcnj5	GIRK4|Kir3.4	potassium inwardly-rectifying channel, subfamily J, member 5	protein-coding	0.005000	0.487562	
mm_29306.1	chr3	107943271	107943471	-	1	NA	NA	NA	378	NM_008184	14867	Mm.458154	NM_008184	ENSMUSG00000068762	Gstm6	-	glutathione S-transferase, mu 6	protein-coding	0.025000	0.542289	
mm_143850.1	chr17	84145827	84146027	-	1	NA	NA	NA	42020	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.015000	0.502488	
mm_45009.1	chr5	38501996	38502196	-	1	NA	NA	NA	56	NM_145559	117591	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.020000	0.542289	
mm_116121.1	chr13	28950512	28950712	-	1	NA	NA	NA	3070	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.025000	0.482587	
mm_53871.1	chr6	149362668	149362868	+	1	NA	NA	NA	-46216	NM_001112796	12121	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	bicaudal D homolog 1 (Drosophila)	protein-coding	0.060000	0.572139	
mm_50897.1	chr6	57580878	57581078	+	1	NA	NA	NA	-14	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.035000	0.572139	
mm_32519.1	chr4	108834514	108834714	+	1	NA	NA	NA	-64	NM_025334	66073	Mm.159965	NM_025334	ENSMUSG00000028567	Txndc12	0610040B21Rik|ERp16|ERp19	thioredoxin domain containing 12 (endoplasmic reticulum)	protein-coding	0.050000	0.492537	
mm_72335.1	chr8	79225747	79225947	+	1	NA	NA	NA	22736	NM_026315	67687	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.020000	0.512438	
mm_58380.1	chr6	149188529	149188729	-	1	NA	NA	NA	83	NM_001113424	232566	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0.060000	0.601990	
mm_139065.1	chr17	46555149	46555349	+	1	NA	NA	NA	913	NM_020493	20807	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0.085000	0.686567	
mm_30434.1	chr3	153322723	153322923	-	1	NA	NA	NA	-24174	NR_126464	75489	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0.010000	0.512438	
mm_130960.1	chr15	103314788	103314988	-	1	NA	NA	NA	-4450	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.045000	0.696517	
mm_32356.1	chr4	105157346	105157546	+	1	NA	NA	NA	99	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.080000	0.646766	
mm_19271.1	chr2	85086384	85086584	-	1	NA	NA	NA	-23	NR_040504	74687	Mm.66996	NR_040504	ENSMUSG00000086969	4930443O20Rik	-	RIKEN cDNA 4930443O20 gene	ncRNA	0.000000	0.492537	
mm_40652.1	chr5	65107562	65107762	+	1	NA	NA	NA	94	NM_001347355	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.145000	0.786070	
mm_19426.1	chr2	91931872	91932072	-	1	NA	NA	NA	-113	NM_001291482	17242	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.055000	0.636816	
mm_59562.1	chr7	28086254	28086454	+	1	NA	NA	NA	15118	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.035000	0.606965	
mm_34920.1	chr4	155761119	155761319	+	1	NA	NA	NA	27	NR_027972	70448	Mm.70636	NM_175157	ENSMUSG00000054514	Atad3aos	2610204G22Rik	ATPase family, AAA domain containing 3A, opposite strand	ncRNA	0.060000	0.547264	
mm_43253.1	chr5	130219442	130219642	+	1	NA	NA	NA	-202	NM_001081394	71667	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0.005000	0.542289	
mm_36058.1	chr4	57364181	57364381	-	1	NA	NA	NA	11	NR_038179	73349	Mm.393774	NR_038178		1700042G15Rik	-	RIKEN cDNA 1700042G15 gene	ncRNA	0.005000	0.522388	
mm_154524.1	chrM	13349	13549	-	1	NA	NA	NA	NA	NA									0.000000	0.323383	
mm_49440.1	chr6	29319093	29319293	+	1	NA	NA	NA	53	NM_001289664	330277	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	0.010000	0.517413	
mm_16262.1	chr2	173522478	173522678	+	1	NA	NA	NA	-14	NM_028158	72221	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0.060000	0.601990	
mm_117091.1	chr13	59770197	59770397	-	1	NA	NA	NA	331	NR_015349	13996	Mm.490435	NR_015349	ENSMUSG00000089875	Etohd2	AW491659	ethanol decreased 2	ncRNA	0.100000	0.631841	
mm_153508.1	chr19	41363827	41364027	-	1	NA	NA	NA	21143	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.000000	0.432836	
mm_135633.1	chr16	52333056	52333256	-	1	NA	NA	NA	119925	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.452736	
mm_114247.1	chr13	56630478	56630678	+	1	NA	NA	NA	20975	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.020000	0.522388	
mm_132909.1	chr16	48872760	48872960	+	1	NA	NA	NA	252	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.000000	0.482587	
mm_39746.1	chr5	29569395	29569595	+	1	NA	NA	NA	253	NM_133907	100763	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	0.135000	0.746269	
mm_142806.1	chr17	50668875	50669075	-	1	NA	NA	NA	-29706	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.015000	0.562189	
mm_93094.1	chr10	89686106	89686306	-	1	NA	NA	NA	79	NM_198021	213326	Mm.27651	NM_198021	ENSMUSG00000069539	Scyl2	AU015688|AW536445|BC030932|CVAK104|D10Ertd802e	SCY1-like 2 (S. cerevisiae)	protein-coding	0.090000	0.646766	
mm_113319.1	chr13	30764756	30764956	+	1	NA	NA	NA	15623	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.010000	0.393035	
mm_53646.1	chr6	140639885	140640085	+	1	NA	NA	NA	13100	NM_001309436	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.000000	0.353234	
mm_27919.1	chr3	79531780	79531980	-	1	NA	NA	NA	35799	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.020000	0.462687	
mm_17192.1	chr2	25466713	25466913	-	1	NA	NA	NA	2936	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.005000	0.547264	
mm_6869.1	chr1	84281893	84282093	-	1	NA	NA	NA	2652	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.005000	0.427861	
mm_81956.1	chr9	120571410	120571610	+	1	NA	NA	NA	-7	NM_025974	67115	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	0.135000	0.696517	
mm_77322.1	chr8	119416823	119417023	-	1	NA	NA	NA	-20239	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.000000	0.587065	
mm_70362.1	chr8	8661712	8661912	+	1	NA	NA	NA	-1039	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.080000	0.661692	
mm_60883.1	chr7	46376374	46376574	+	1	NA	NA	NA	0	NM_010866	17927	Mm.1526	NM_010866	ENSMUSG00000009471	Myod1	AI503393|MYF3|MyoD|Myod-1|bHLHc1	myogenic differentiation 1	protein-coding	0.045000	0.636816	
mm_103113.1	chr11	69982550	69982750	-	1	NA	NA	NA	-1415	NM_018740	54351	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.000000	0.472637	
mm_122230.1	chr14	33184990	33185190	-	1	NA	NA	NA	-24	NM_001146022	545030	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.010000	0.517413	
mm_139598.1	chr17	57253852	57254052	+	1	NA	NA	NA	4501	NM_001242389	106628	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	0.010000	0.487562	
mm_156896.1	chrX	167206995	167207195	+	1	NA	NA	NA	2123	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.000000	0.343284	
mm_80877.1	chr9	98986289	98986489	+	1	NA	NA	NA	16	NM_011810	23873	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0.125000	0.706468	
mm_75738.1	chr8	69716365	69716565	-	1	NA	NA	NA	21	NM_181274	66869	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	0.060000	0.552239	
mm_158284.1	chrX	111696998	111697198	-	1	NA	NA	NA	-19	NM_001290459	245596	Mm.246623	NM_001080549	ENSMUSG00000034551	Hdx	D030011N01Rik|Gm380	highly divergent homeobox	protein-coding	0.050000	0.562189	
mm_172849.1	chr9	36568568	36568768	-	1	NA	NA	NA	13967	NM_001167584	100312948	Mm.475849	NM_001167584	ENSMUSG00000091248	Gm17689	Pate-g|Pate8	predicted gene, 17689	protein-coding	0.080000	0.676617	
mm_114264.1	chr13	58071386	58071586	+	1	NA	NA	NA	30942	NM_001195075	100503085	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0.055000	0.572139	
mm_1530.1	chr1	72849107	72849307	+	1	NA	NA	NA	23820	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.035000	0.611940	
mm_22899.1	chr3	30801020	30801220	+	1	NA	NA	NA	8244	NM_027016	69276	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	0.015000	0.407960	
mm_19137.1	chr2	80446965	80447165	-	1	NA	NA	NA	331	NM_011356	20378	Mm.427436	NM_011356	ENSMUSG00000027004	Frzb	Frp|Sfrp3|frezzled|fritz|frzb-1	frizzled-related protein	protein-coding	0.045000	0.577114	
mm_95819.1	chr11	55213699	55213899	+	1	NA	NA	NA	9459	NM_153139	215335	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0.015000	0.582090	
mm_102390.1	chr11	58977938	58978138	-	1	NA	NA	NA	-55	NM_001290988	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.065000	0.517413	
mm_108222.1	chr12	77177648	77177848	+	1	NA	NA	NA	-60356	NM_001252614	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.000000	0.368159	
mm_22944.1	chr3	31984121	31984321	+	1	NA	NA	NA	81518	NM_028231	72413	Mm.64790	NM_028231	ENSMUSG00000037610	Kcnmb2	2700049B16Rik|3110031N04Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 2	protein-coding	0.005000	0.407960	
mm_127997.1	chr15	12737064	12737264	-	1	NA	NA	NA	87493	NM_029998	77877	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	0.010000	0.477612	
mm_56691.1	chr6	114165384	114165584	-	1	NA	NA	NA	34243	NM_172890	243616	Mm.44683	NM_172890	ENSMUSG00000030307	Slc6a11	D930045G19Rik|E130202I16Rik|GAT4|Gabt4|Gat3	solute carrier family 6 (neurotransmitter transporter, GABA), member 11	protein-coding	0.005000	0.552239	-36(TACTATAAAAGG,-,0.00)
mm_47307.1	chr5	122396919	122397119	-	1	NA	NA	NA	5141	NM_019824	56378	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.015000	0.537313	
mm_64288.1	chr7	141856690	141856890	+	1	NA	NA	NA	17718	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.030000	0.522388	
mm_47357.1	chr5	122779356	122779556	-	1	NA	NA	NA	-46	NM_145358	207565	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.165000	0.786070	
mm_130211.1	chr15	95586968	95587168	-	1	NA	NA	NA	-58816	NM_001289653	54003	Mm.3959	NM_016743	ENSMUSG00000022454	Nell2	A330108N19Rik|R75516|mel91	NEL-like 2	protein-coding	0.045000	0.587065	
mm_114256.1	chr13	56703421	56703621	+	1	NA	NA	NA	-147	NM_001164042	17129	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.130000	0.701493	
mm_55023.1	chr6	48841319	48841519	-	1	NA	NA	NA	-45	NM_001164208	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.005000	0.606965	4(GCCCCTTTAGGG,-,0.00),6(CCCTTTAGGGGT,+,0.00)
mm_156321.1	chrX	137358634	137358834	+	1	NA	NA	NA	-212020	NM_030688	60367	Mm.328321	NM_030688	ENSMUSG00000059203	Il1rapl2	-	interleukin 1 receptor accessory protein-like 2	protein-coding	0.005000	0.417910	
mm_34847.1	chr4	155414915	155415115	+	1	NA	NA	NA	5825	NM_001166029	544678	Mm.472798	NM_177674	ENSMUSG00000078490	Cfap74	2010015L04Rik|A530045M11	cilia and flagella associated protein 74	protein-coding	0.020000	0.522388	
mm_51777.1	chr6	88152283	88152483	+	1	NA	NA	NA	-46281	NM_008090	14461	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.025000	0.631841	
mm_148243.1	chr18	80611612	80611812	-	1	NA	NA	NA	-67166	NR_028424	100039348	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.025000	0.477612	
mm_148265.1	chr18	80986919	80987119	-	1	NA	NA	NA	-441	NM_178280	20689	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	sal-like 3 (Drosophila)	protein-coding	0.185000	0.825871	-35(CACTCTATAAAG,-,0.00),-33(CTCTATAAAGGG,+,0.00),-33(CTCTATAAAGGG,-,0.00)
mm_171589.1	chr4	147642321	147642521	-	1	NA	NA	NA	87	NM_145078	112422	Mm.327194	NM_145078	ENSMUSG00000066000	Zfp979	2610305D13Rik|Ssm1b	zinc finger protein 979	protein-coding	0.020000	0.542289	
mm_30309.1	chr3	149445260	149445460	-	1	NA	NA	NA	170623	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.025000	0.482587	-7(CCTTTTAAATGT,+,0.00)
mm_11732.1	chr2	37505298	37505498	+	1	NA	NA	NA	-11228	NM_177383	338346	Mm.445325	NM_177383	ENSMUSG00000053164	Gpr21	C230004C13Rik	G protein-coupled receptor 21	protein-coding	0.000000	0.383085	
mm_78915.1	chr9	44985345	44985545	+	1	NA	NA	NA	3659	NM_013487	12500	Mm.4527	NM_013487	ENSMUSG00000032094	Cd3d	T3d	CD3 antigen, delta polypeptide	protein-coding	0.010000	0.507463	
mm_148090.1	chr18	73770409	73770609	-	1	NA	NA	NA	-16030	NM_053255	114615	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	0.035000	0.467662	
mm_28176.1	chr3	88000255	88000455	-	1	NA	NA	NA	1	NM_007529	12032	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0.105000	0.736318	
mm_113040.1	chr13	23562513	23562713	+	1	NA	NA	NA	-248	NM_178205	319151	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	0.035000	0.398010	-52(CCTTAAATAATC,+,0.00)
mm_65322.1	chr7	24954568	24954768	-	1	NA	NA	NA	15407	NR_106013	102465633		NR_106013	ENSMUSG00000098802	Mir7046	Gm27469|mmu-mir-7046	microRNA 7046	ncRNA	0.040000	0.572139	
mm_6893.1	chr1	84696054	84696254	-	1	NA	NA	NA	67	NM_152915	227325	Mm.292560	NM_152915	ENSMUSG00000036766	Dner	A930026D19Rik|BET|Bret	delta/notch-like EGF repeat containing	protein-coding	0.065000	0.606965	
mm_52548.1	chr6	115935042	115935242	+	1	NA	NA	NA	3215	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.030000	0.472637	
mm_5961.1	chr1	56972098	56972298	-	1	NA	NA	NA	729	NR_024325	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0.080000	0.671642	
mm_9618.1	chr1	176614666	176614866	-	1	NA	NA	NA	157657	NR_029775	723921		NR_029775	ENSMUSG00000065573	Mir350	Mirn350|mir-350|mmu-mir-350	microRNA 350	ncRNA	0.010000	0.477612	
mm_5476.1	chr1	36683003	36683203	-	1	NA	NA	NA	80	NM_001126046	381337	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0.070000	0.686567	
mm_87534.1	chr10	53471426	53471626	+	1	NA	NA	NA	47463	NR_037973	100502868	Mm.297722	NR_037973		Gm20597	B230314j19	predicted gene, 20597	ncRNA	0.015000	0.457711	-31(CTTTAAATACCC,+,0.00)
mm_90489.1	chr10	128015109	128015309	+	1	NA	NA	NA	-6	NM_008921	19075	Mm.2903	NM_008921	ENSMUSG00000025395	Prim1	AI324982	DNA primase, p49 subunit	protein-coding	0.065000	0.567164	
mm_116788.1	chr13	53374213	53374413	-	1	NA	NA	NA	3048	NM_009269	268656	Mm.240336	NM_009269	ENSMUSG00000021468	Sptlc1	AW552086|C77762|E030036H05|Lcb1	serine palmitoyltransferase, long chain base subunit 1	protein-coding	0.005000	0.398010	-92(TCTCTTATAGTC,+,0.00),25(AGCTTTTAAAGC,-,0.00),26(GCTTTTAAAGCT,+,0.00)
mm_121788.1	chr14	19977078	19977278	-	1	NA	NA	NA	71	NM_001038637	14702	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.035000	0.601990	
mm_157031.1	chrX	7928417	7928617	-	1	NA	NA	NA	90	NM_181548	353283	Mm.250895	NM_181548	ENSMUSG00000031160	Eras	HRAS2|HRasp|Ha-Ras2|ecat5	ES cell-expressed Ras	protein-coding	0.035000	0.626866	
mm_15599.1	chr2	160667778	160667978	+	1	NA	NA	NA	21981	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.005000	0.388060	
mm_139972.1	chr17	71769639	71769839	+	1	NA	NA	NA	48	NM_001271484	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	0.020000	0.517413	
mm_100709.1	chr11	3722106	3722306	-	1	NA	NA	NA	21	NM_001302631	74309	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	0.010000	0.631841	
mm_37435.1	chr4	122950126	122950326	-	1	NA	NA	NA	10962	NM_029662	76574	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.020000	0.557214	
mm_61667.1	chr7	80779631	80779831	+	1	NA	NA	NA	23600	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.025000	0.577114	76(GACCAGAAAAGG,-,0.00)
mm_50092.1	chr6	41532828	41533028	+	1	NA	NA	NA	11152	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.467662	-33(CCTTATATGACA,+,0.00)
mm_71943.1	chr8	70374868	70375068	+	1	NA	NA	NA	1420	NM_016685	12845	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	0.110000	0.686567	
mm_62934.1	chr7	118712573	118712773	+	1	NA	NA	NA	62	NM_182995	101565	Mm.23279	NM_182995	ENSMUSG00000033904	Ccp110	6330503K22Rik|AA415922|AI427129|AW557948|CP110	centriolar coiled coil protein 110	protein-coding	0.065000	0.626866	
mm_45679.1	chr5	77349287	77349487	-	1	NA	NA	NA	38903	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.010000	0.393035	
mm_117617.1	chr13	91807516	91807716	-	1	NA	NA	NA	80	NM_145453	69085	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	0.100000	0.646766	
mm_17830.1	chr2	33942038	33942238	-	1	NA	NA	NA	-54192	NM_175184	72543	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.005000	0.482587	
mm_163664.1	chr13	77708647	77708847	+	1	NA	NA	NA	57	NM_001163419	68675	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding	0.090000	0.601990	
mm_125017.1	chr15	25626361	25626561	+	1	NA	NA	NA	3911	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.015000	0.437811	
mm_16333.1	chr2	174329889	174330089	+	1	NA	NA	NA	-81	NM_201616	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.140000	0.825871	
mm_112146.1	chr12	113259445	113259645	-	1	NA	NA	NA	73642	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.020000	0.587065	
mm_27675.1	chr3	65922494	65922694	-	1	NA	NA	NA	35631	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.020000	0.522388	28(CTTTTTAGAGGG,+,0.00)
mm_111860.1	chr12	107960117	107960317	-	1	NA	NA	NA	43197	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.005000	0.348259	7(TCTTAAAAAGGA,+,0.00)
mm_141327.1	chr17	28455550	28455750	-	1	NA	NA	NA	30499	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.000000	0.358209	
mm_8792.1	chr1	161788267	161788467	-	1	NA	NA	NA	128	NM_001205243	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.010000	0.497512	-35(AACTTTATAAAG,-,0.00),-33(CTTTATAAAGAA,+,0.00)
mm_60615.1	chr7	44592921	44593121	+	1	NA	NA	NA	2135	NM_001290682	16504	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.015000	0.522388	-15(AAGTTTATAAGC,-,0.00)
mm_131225.1	chr16	9133203	9133403	+	1	NA	NA	NA	303203	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.015000	0.462687	
mm_164384.1	chr16	31740365	31740565	+	1	NA	NA	NA	-13885	NM_001252436	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.030000	0.616915	
mm_102412.1	chr11	59201590	59201790	-	1	NA	NA	NA	741	NR_037964	72203	Mm.339566	NR_037964		2610507I01Rik	5033414D05Rik	RIKEN cDNA 2610507I01 gene	ncRNA	0.015000	0.462687	
mm_12714.1	chr2	76968359	76968559	+	1	NA	NA	NA	14088	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.030000	0.457711	
mm_131031.1	chr16	3744052	3744252	+	1	NA	NA	NA	53	NM_148924	74120	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.085000	0.611940	
mm_25926.1	chr3	131189693	131189893	+	1	NA	NA	NA	77002	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.015000	0.383085	
mm_86293.1	chr9	122187466	122187666	-	1	NA	NA	NA	70300	NM_133741	20623	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0.015000	0.487562	
mm_43653.1	chr5	138341858	138342058	+	1	NA	NA	NA	61449	NM_016964	50878	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	0.000000	0.492537	
mm_105677.1	chr11	107470693	107470893	-	1	NA	NA	NA	-73	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.080000	0.641791	
mm_95685.1	chr11	54270729	54270929	+	1	NA	NA	NA	-3550	NM_010556	16187	Mm.983	NM_010556	ENSMUSG00000018914	Il3	BPA|Csfmu|HCGF|Il-3|MCGF|PSF	interleukin 3	protein-coding	0.010000	0.477612	
mm_166733.1	chr6	122801652	122801852	-	1	NA	NA	NA	-18432	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.150000	0.716418	
mm_164897.1	chr18	65698045	65698245	+	1	NA	NA	NA	-123	NM_177028	319888	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0.015000	0.487562	29(GGCTTGTTAAGG,-,0.00)
mm_17263.1	chr2	26005224	26005424	-	1	NA	NA	NA	16436	NM_133835	98766	Mm.247824	NM_133835	ENSMUSG00000036352	Ubac1	1110033G07Rik|AA407978|GBDR1|Gdbr1|Kpc2|Ubadc1	ubiquitin associated domain containing 1	protein-coding	0.015000	0.512438	
mm_5155.1	chr1	9944016	9944216	-	1	NA	NA	NA	2	NR_024067	73824	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	0.115000	0.706468	
mm_70235.1	chr8	3311770	3311970	+	1	NA	NA	NA	-32253	NM_001330056	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.010000	0.507463	-30(CCTTATATAGTC,+,0.00)
mm_34282.1	chr4	141424580	141424780	+	1	NA	NA	NA	3901	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.000000	0.537313	
mm_99967.1	chr11	113684516	113684716	+	1	NA	NA	NA	204	NM_177777	276852	Mm.239566	NM_177777	ENSMUSG00000041623	D11Wsu47e	-	DNA segment, Chr 11, Wayne State University 47, expressed	protein-coding	0.100000	0.656716	
mm_164370.1	chr16	24193328	24193528	-	1	NA	NA	NA	-199922	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.030000	0.552239	
mm_172714.1	chr8	70493205	70493405	+	1	NA	NA	NA	174	NM_018827	12931	Mm.335584	NM_018827	ENSMUSG00000007888	Crlf1	CLF-1|CRLM-3|CRLM3|NR6|NR6.1	cytokine receptor-like factor 1	protein-coding	0.150000	0.761194	
mm_125621.1	chr15	61987967	61988167	+	1	NA	NA	NA	2726	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.085000	0.661692	
mm_63007.1	chr7	120876116	120876316	+	1	NA	NA	NA	25027	NM_001267711	13631	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.005000	0.532338	
mm_40596.1	chr5	64230518	64230718	+	1	NA	NA	NA	261	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.105000	0.711443	
mm_83465.1	chr9	45264146	45264346	-	1	NA	NA	NA	2461	NR_106054	102466803		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.010000	0.507463	
mm_167233.1	chr8	13600502	13600702	+	1	NA	NA	NA	-38141	NM_001080781	66501	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.005000	0.562189	
mm_16360.1	chr2	174450593	174450793	+	1	NA	NA	NA	98	NM_001080971	545486	Mm.45285	NM_001080971	ENSMUSG00000016255	Tubb1	2810484G07Rik|M(beta)1	tubulin, beta 1 class VI	protein-coding	0.015000	0.587065	
mm_17417.1	chr2	27392116	27392316	-	1	NA	NA	NA	35392	NR_133905	22325	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.010000	0.587065	
mm_88459.1	chr10	77560905	77561105	+	1	NA	NA	NA	-20762	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.020000	0.522388	
mm_12713.1	chr2	76695726	76695926	+	1	NA	NA	NA	20511	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.000000	0.288557	
mm_143753.1	chr17	81582144	81582344	-	1	NA	NA	NA	156143	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.020000	0.457711	
mm_35094.1	chr4	8648349	8648549	-	1	NA	NA	NA	-41957	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.075000	0.616915	
mm_9929.1	chr1	189899542	189899742	-	1	NA	NA	NA	22646	NM_026796	226830	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.015000	0.462687	
mm_157325.1	chrX	23285455	23285655	-	1	NA	NA	NA	4	NM_001290476	67455	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	0.025000	0.462687	
mm_54427.1	chr6	33992092	33992292	-	1	NA	NA	NA	-37256	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.060000	0.452736	
mm_152665.1	chr19	14543303	14543503	-	1	NA	NA	NA	53810	NM_001302951	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.005000	0.248756	
mm_15021.1	chr2	152685193	152685393	+	1	NA	NA	NA	-1855	NM_025543	66405	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	0.005000	0.472637	
mm_125618.1	chr15	61987516	61987716	+	1	NA	NA	NA	2275	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.080000	0.577114	
mm_162105.1	chrX	43274796	43274996	-	1	NA	NA	NA	-112	NM_011855	23963	Mm.327698	NM_011855	ENSMUSG00000016150	Tenm1	Odz1|Odz2|TCAP-1|Ten-m1|ten-1	teneurin transmembrane protein 1	protein-coding	0.000000	0.258706	-49(ACCTTTATAAAG,-,0.00),-47(CTTTATAAAGAT,+,0.00)
mm_74954.1	chr8	26001879	26002079	-	1	NA	NA	NA	-7858	NM_029037	74653	Mm.17631	NM_029037	ENSMUSG00000037251	Pomk	4930444A02Rik|Sgk196	protein-O-mannose kinase	protein-coding	0.005000	0.368159	
mm_134505.1	chr16	19063385	19063585	-	1	NA	NA	NA	186735	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.000000	0.437811	
mm_143899.1	chr17	84716603	84716803	-	1	NA	NA	NA	33582	NM_026180	67470	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP-binding cassette, sub-family G (WHITE), member 8	protein-coding	0.025000	0.412935	
mm_58610.1	chr7	5061270	5061470	+	1	NA	NA	NA	-773	NM_133671	22185	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.080000	0.592040	
mm_10054.1	chr1	193241420	193241620	-	1	NA	NA	NA	840	NM_001044751	15483	Mm.28328	NM_008288	ENSMUSG00000016194	Hsd11b1	-	hydroxysteroid 11-beta dehydrogenase 1	protein-coding	0.010000	0.482587	
mm_87462.1	chr10	51485017	51485217	+	1	NA	NA	NA	4505	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.010000	0.373134	
mm_1549.1	chr1	72863807	72864007	+	1	NA	NA	NA	10958	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.025000	0.582090	
mm_24062.1	chr3	87915443	87915643	+	1	NA	NA	NA	-4001	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.000000	0.447761	
mm_2491.1	chr1	105990886	105991086	+	1	NA	NA	NA	580	NM_001122675	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.205000	0.840796	
mm_124542.1	chr14	122464748	122464948	-	1	NA	NA	NA	810	NM_022987	65100	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	0.075000	0.731343	
mm_137717.1	chr17	29100176	29100376	+	1	NA	NA	NA	6507	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.000000	0.567164	
mm_26546.1	chr3	146186187	146186387	+	1	NA	NA	NA	-34674	NM_022983	65086	Mm.155520	NM_022983	ENSMUSG00000036832	Lpar3	Edg7|lpA3	lysophosphatidic acid receptor 3	protein-coding	0.025000	0.373134	
mm_134502.1	chr16	18876562	18876762	-	1	NA	NA	NA	-25	NM_010922	18100	Mm.20918	NM_010922	ENSMUSG00000022706	Mrpl40	Nlvcf	mitochondrial ribosomal protein L40	protein-coding	0.125000	0.741294	
mm_154994.1	chrX	38600355	38600555	+	1	NA	NA	NA	-203	NM_026902	68995	Mm.262453	NM_026902	ENSMUSG00000000355	Mcts1	1500019M23Rik|MCT-1	malignant T cell amplified sequence 1	protein-coding	0.015000	0.467662	
mm_7828.1	chr1	132116542	132116742	-	1	NA	NA	NA	23043	NM_008795	18557	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.040000	0.601990	
mm_6505.1	chr1	74304067	74304267	-	1	NA	NA	NA	169	NM_027154	69660	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.105000	0.761194	
mm_69619.1	chr7	137313778	137313978	-	1	NA	NA	NA	567	NM_001113415	13593	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.140000	0.701493	
mm_12022.1	chr2	58157113	58157313	+	1	NA	NA	NA	2909	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.010000	0.457711	
mm_140106.1	chr17	78573777	78573977	+	1	NA	NA	NA	65814	NM_028813	74199	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik	vitrin	protein-coding	0.025000	0.592040	
mm_809.1	chr1	45795400	45795600	+	1	NA	NA	NA	-1	NM_028599	73674	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0.095000	0.651741	
mm_2741.1	chr1	128570486	128570686	+	1	NA	NA	NA	21713	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.030000	0.417910	
mm_105937.1	chr11	115187171	115187371	-	1	NA	NA	NA	45	NM_025400	66176	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	0.070000	0.606965	
mm_71656.1	chr8	60518140	60518340	+	1	NA	NA	NA	12116	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.005000	0.333333	
mm_17613.1	chr2	30928875	30929075	-	1	NA	NA	NA	-24026	NM_133673	30934	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.020000	0.537313	11(CCTCATAAAGTG,+,0.00)
mm_12706.1	chr2	76650171	76650371	+	1	NA	NA	NA	-2	NM_001080711	381375	Mm.330312	NM_001080711	ENSMUSG00000075267	Dfnb59	Gm1001|Pjvk	deafness, autosomal recessive 59 (human)	protein-coding	0.020000	0.407960	
mm_56990.1	chr6	120822635	120822835	-	1	NA	NA	NA	-50	NM_007510	11973	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|E2|P31|Vma4	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	0.065000	0.582090	2(GGGTTTATAAAG,-,0.00),4(GTTTATAAAGTA,+,0.00)
mm_157094.1	chrX	9437161	9437361	-	1	NA	NA	NA	32063	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.407960	
mm_66259.1	chr7	35647380	35647580	-	1	NA	NA	NA	2	NM_019746	56330	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0.135000	0.706468	
mm_150634.1	chr19	41482880	41483080	+	1	NA	NA	NA	-42272	NM_001326287	627352	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0.185000	0.865672	
mm_150047.1	chr19	29380337	29380537	+	1	NA	NA	NA	12999	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.030000	0.512438	
mm_92761.1	chr10	81092443	81092643	-	1	NA	NA	NA	6329	NM_145365	208677	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	0.040000	0.646766	
mm_21482.1	chr2	163031333	163031533	-	1	NA	NA	NA	13961	NM_172150	245866	Mm.34034	NM_172150	ENSMUSG00000017858	Ift52	BC037708|NGD5	intraflagellar transport 52	protein-coding	0.015000	0.442786	
mm_12290.1	chr2	69031344	69031544	+	1	NA	NA	NA	-104356	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.015000	0.427861	
mm_1450.1	chr1	67230499	67230699	+	1	NA	NA	NA	107572	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.343284	
mm_95415.1	chr11	50025292	50025492	+	1	NA	NA	NA	61	NM_001290750	59044	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.205000	0.840796	
mm_122863.1	chr14	54908818	54909018	-	1	NA	NA	NA	4214	NM_021551	59049	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	0.025000	0.601990	
mm_129764.1	chr15	82620839	82621039	-	1	NA	NA	NA	-32	NM_145474	223706	Mm.436843	NM_145474	ENSMUSG00000094559	Cyp2d34	-	cytochrome P450, family 2, subfamily d, polypeptide 34	protein-coding	0.000000	0.507463	-38(TCCTTTATAAGG,-,0.00),-36(CTTTATAAGGTG,+,0.00),-12(CCTTATAAAGGA,+,0.00)
mm_81393.1	chr9	108988236	108988436	+	1	NA	NA	NA	2173	NM_145077	171530	Mm.388865	NM_145077	ENSMUSG00000049699	Ucn2	Ucn II|Ucn-2|ucn-II	urocortin 2	protein-coding	0.050000	0.666667	
mm_121254.1	chr14	103057530	103057730	+	1	NA	NA	NA	10618	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.010000	0.502488	
mm_16038.1	chr2	167690185	167690385	+	1	NA	NA	NA	-474	NR_110334	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.020000	0.293532	
mm_108725.1	chr12	87200434	87200634	+	1	NA	NA	NA	-9	NM_001290288	238333	Mm.302304	NM_001290288	ENSMUSG00000090812	Samd15	Gm263	sterile alpha motif domain containing 15	protein-coding	0.050000	0.477612	
mm_122246.1	chr14	33609816	33610016	-	1	NA	NA	NA	20646	NM_008978	19256	Mm.8019	NM_008978	ENSMUSG00000021940	Ptpn20	typ	protein tyrosine phosphatase, non-receptor type 20	protein-coding	0.005000	0.343284	
mm_141643.1	chr17	33394506	33394706	-	1	NA	NA	NA	31	NM_009542	22643	Mm.4417	NM_009542	ENSMUSG00000055240	Zfp101	AI316498|AI325003	zinc finger protein 101	protein-coding	0.040000	0.527363	
mm_2176.1	chr1	88406952	88407152	+	1	NA	NA	NA	42	NM_029269	75396	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	0.015000	0.507463	
mm_119718.1	chr14	53881496	53881696	+	1	NA	NA	NA	372333	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.487562	
mm_156948.1	chrX	169983871	169984071	+	1	NA	NA	NA	-5054	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.015000	0.432836	
mm_132178.1	chr16	32400563	32400763	+	1	NA	NA	NA	157	NM_001160402	277203	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0.030000	0.572139	
mm_81454.1	chr9	109832928	109833128	+	1	NA	NA	NA	234	NM_018757	54369	Mm.12951	NM_018757	ENSMUSG00000032478	Nme6	nm23-M6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding	0.045000	0.562189	
mm_118252.1	chr13	112289050	112289250	-	1	NA	NA	NA	632	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.010000	0.402985	
mm_46591.1	chr5	107725350	107725550	-	1	NA	NA	NA	355	NM_001267621	14581	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.085000	0.666667	
mm_128327.1	chr15	38078751	38078951	-	1	NA	NA	NA	3	NM_001112721	70790	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.160000	0.800995	
mm_171851.1	chr5	16941019	16941219	+	1	NA	NA	NA	387218	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.065000	0.656716	
mm_5232.1	chr1	14310108	14310308	-	1	NA	NA	NA	-9	NM_010164	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.030000	0.417910	-51(TTTTTTAAAGCA,+,0.00),2(GCATTTAAACCA,+,0.00)
mm_97061.1	chr11	72713631	72713831	+	1	NA	NA	NA	23729	NM_009671	11736	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	0.010000	0.338308	
mm_82268.1	chr9	7221447	7221647	-	1	NA	NA	NA	36981	NM_029775	76863	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0.005000	0.378109	
mm_162864.1	chr10	93308992	93309192	-	1	NA	NA	NA	2067	NM_001322268	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.005000	0.547264	
mm_98453.1	chr11	94945718	94945918	+	1	NA	NA	NA	9594	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.020000	0.572139	
mm_163344.1	chr12	16622272	16622472	+	1	NA	NA	NA	-31098	NM_008747	18217	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT2R|NTRL	neurotensin receptor 2	protein-coding	0.005000	0.517413	
mm_81198.1	chr9	107554702	107554902	+	1	NA	NA	NA	219	NM_019713	56289	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0.100000	0.641791	
mm_12781.1	chr2	79330500	79330700	+	1	NA	NA	NA	75174	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.010000	0.437811	
mm_47866.1	chr5	134638936	134639136	-	1	NA	NA	NA	373	NM_001312867	22384	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0.135000	0.736318	
mm_127350.1	chr15	100619579	100619779	+	1	NA	NA	NA	4017	NM_011873	23994	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0.000000	0.437811	
mm_132313.1	chr16	33726307	33726507	+	1	NA	NA	NA	41941	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629|OTTMUSG00000027315	heart development protein with EGF-like domains 1	protein-coding	0.040000	0.522388	
mm_78336.1	chr9	25263084	25263284	+	1	NA	NA	NA	10745	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.005000	0.422886	
mm_61982.1	chr7	90965693	90965893	+	1	NA	NA	NA	-124993	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.005000	0.363184	
mm_52335.1	chr6	110645480	110645680	+	1	NA	NA	NA	-18	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.045000	0.631841	-35(GACCATTTAAAG,-,0.00),-33(CCATTTAAAGCG,+,0.00)
mm_82321.1	chr9	8004468	8004668	-	1	NA	NA	NA	28	NM_001171147	22601	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	0.105000	0.681592	
mm_74305.1	chr8	126556589	126556789	+	1	NA	NA	NA	36747	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.010000	0.562189	-69(TCCTATAAAGGC,+,0.00),-69(TCCTATAAAGGC,-,0.00)
mm_75444.1	chr8	47533358	47533558	-	1	NA	NA	NA	12	NM_177240	320714	Mm.39461	NM_177240	ENSMUSG00000038102	Trappc11	AW558465|D030016E14Rik|R75422	trafficking protein particle complex 11	protein-coding	0.065000	0.621891	
mm_110759.1	chr12	70111854	70112054	-	1	NA	NA	NA	81	NM_001286080	18080	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0.150000	0.791045	
mm_37472.1	chr4	123564587	123564787	-	1	NA	NA	NA	-51733	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.005000	0.527363	
mm_147822.1	chr18	61911653	61911853	-	1	NA	NA	NA	71	NM_198649	319713	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	0.090000	0.711443	
mm_114175.1	chr13	55599995	55600195	+	1	NA	NA	NA	199	NM_001311137	218271	Mm.139825	NM_146045	ENSMUSG00000021504	B4galt7	-	xylosylprotein beta1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I)	protein-coding	0.095000	0.741294	
mm_111219.1	chr12	84450881	84451081	-	1	NA	NA	NA	43	NM_134042	104776	Mm.247510	NM_134042	ENSMUSG00000021238	Aldh6a1	1110038I05Rik|Mmsdh	aldehyde dehydrogenase family 6, subfamily A1	protein-coding	0.080000	0.636816	
mm_30594.1	chr4	6365608	6365808	+	1	NA	NA	NA	28	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.140000	0.776119	
mm_125492.1	chr15	54952857	54953057	+	1	NA	NA	NA	-32811	NM_001285994	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.030000	0.507463	
mm_7656.1	chr1	128359503	128359703	-	1	NA	NA	NA	102	NM_008567	17219	Mm.4933	NM_008567	ENSMUSG00000026355	Mcm6	ASP-l1|D1Wsu22e|Mcmd6	minichromosome maintenance complex component 6	protein-coding	0.155000	0.746269	
mm_144806.1	chr18	36281353	36281553	+	1	NA	NA	NA	291	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.150000	0.791045	
mm_101043.1	chr11	8624096	8624296	-	1	NA	NA	NA	40339	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.055000	0.557214	
mm_116665.1	chr13	49203988	49204188	-	1	NA	NA	NA	11938	NM_026738	68480	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.015000	0.527363	
mm_109903.1	chr12	7950058	7950258	-	1	NA	NA	NA	-27519	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.388060	
mm_55222.1	chr6	52230849	52231049	-	1	NA	NA	NA	-784	NR_029912	723820		NR_029912	ENSMUSG00000065443	Mir196b	Mirn196b|mir-196b	microRNA 196b	ncRNA	0.020000	0.497512	
mm_131906.1	chr16	23269245	23269445	+	1	NA	NA	NA	-21125	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.030000	0.572139	
mm_127461.1	chr15	101272122	101272322	+	1	NA	NA	NA	5376	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.040000	0.577114	-56(CAGCCTAAAAGG,-,0.00),-54(GCCTAAAAGGGC,+,0.00)
mm_103877.1	chr11	83529008	83529208	-	1	NA	NA	NA	1410	NM_013653	20304	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.025000	0.567164	62(CCTCTAATAGCT,+,0.00)
mm_70093.1	chr7	142657379	142657579	-	1	NA	NA	NA	17	NM_001122737	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.025000	0.597015	
mm_153422.1	chr19	40665846	40666046	-	1	NA	NA	NA	6176	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.015000	0.462687	
mm_134876.1	chr16	28929737	28929937	-	1	NA	NA	NA	-139	NM_177718	239796	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.165000	0.835821	
mm_169629.1	chr15	4419712	4419912	-	1	NA	NA	NA	44321	NM_177355	239318	Mm.308996	NM_177355	ENSMUSG00000049148	Plcxd3	B130016O10Rik	phosphatidylinositol-specific phospholipase C, X domain containing 3	protein-coding	0.015000	0.502488	
mm_159691.1	chr5	21865479	21865679	-	1	NA	NA	NA	25	NM_030727	80979	Mm.160370	NM_030727	ENSMUSG00000029015	Slc26a5	Pres|prestin	solute carrier family 26, member 5	protein-coding	0.100000	0.731343	
mm_138073.1	chr17	33949318	33949518	+	1	NA	NA	NA	2070	NM_019420	54218	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	0.025000	0.512438	
mm_155451.1	chrX	73495340	73495540	+	1	NA	NA	NA	-7646	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.005000	0.457711	
mm_70741.1	chr8	19141389	19141589	+	1	NA	NA	NA	730	NM_001286493	546038	Mm.99206	NM_001034905	ENSMUSG00000059463	Spag11b	EG546038|Ep2c/h|Spag11c/h	sperm associated antigen 11B	protein-coding	0.035000	0.492537	
mm_57147.1	chr6	122698965	122699165	-	1	NA	NA	NA	-8424	NM_001289831	71950	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	0.030000	0.472637	-44(CCTTAAATATTC,+,0.00)
mm_11869.1	chr2	48974320	48974520	+	1	NA	NA	NA	24912	NM_029924	109241	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630|OTTMUSG00000012483	methyl-CpG binding domain protein 5	protein-coding	0.010000	0.283582	
mm_34666.1	chr4	150909966	150910166	+	1	NA	NA	NA	-145	NM_020569	57320	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.070000	0.592040	
mm_146993.1	chr18	34346998	34347198	-	1	NA	NA	NA	15953	NM_025527	66384	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	0.025000	0.527363	
mm_30829.1	chr4	21879582	21879782	+	1	NA	NA	NA	7	NM_172687	230027	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	0.075000	0.606965	
mm_24721.1	chr3	95235179	95235379	+	1	NA	NA	NA	5830	NM_001024841	229588	Mm.387177	NM_001024841	ENSMUSG00000068860	Gm128	Ment|pmis1	predicted gene 128	protein-coding	0.010000	0.507463	
mm_93168.1	chr10	93306011	93306211	-	1	NA	NA	NA	5048	NM_001322268	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.010000	0.422886	64(AGCTAGAAAAGG,-,0.00)
mm_122350.1	chr14	38803955	38804155	-	1	NA	NA	NA	-94247	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA	0.000000	0.348259	
mm_69019.1	chr7	126776715	126776915	-	1	NA	NA	NA	-160	NM_026875	66090	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee-like 3 (Drosophila)	protein-coding	0.085000	0.661692	
mm_12009.1	chr2	57330081	57330281	+	1	NA	NA	NA	91799	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.000000	0.368159	
mm_168116.1	chr10	15634639	15634839	+	1	NA	NA	NA	-157038	NR_131087	77538	Mm.128235	NR_131087		C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0.000000	0.407960	-58(CCATATAAAACC,+,0.00)
mm_114312.1	chr13	59823207	59823407	+	1	NA	NA	NA	-160	NM_153538	214290	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.140000	0.726368	
mm_124716.1	chr15	6579728	6579928	+	1	NA	NA	NA	-19	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.015000	0.437811	
mm_28232.1	chr3	88455207	88455407	-	1	NA	NA	NA	454	NM_013658	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.015000	0.582090	
mm_111486.1	chr12	98877659	98877859	-	1	NA	NA	NA	23725	NM_001081191	319670	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	0.005000	0.402985	
mm_27286.1	chr3	41522492	41522692	-	1	NA	NA	NA	5882	NR_130791	78648	Mm.366093	NR_130791		2400006E01Rik	lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA	0.035000	0.393035	
mm_11495.1	chr2	32493539	32493739	+	1	NA	NA	NA	-41720	NM_153560	98952	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.040000	0.597015	
mm_146826.1	chr18	21651728	21651928	-	1	NA	NA	NA	263	NM_001271580	74644	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding	0.045000	0.567164	
mm_87498.1	chr10	51527942	51528142	+	1	NA	NA	NA	37144	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.020000	0.442786	
mm_89790.1	chr10	102178328	102178528	+	1	NA	NA	NA	19349	NM_001162369	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.005000	0.273632	
mm_95116.1	chr11	34078015	34078215	+	1	NA	NA	NA	30914	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.010000	0.467662	
mm_169432.1	chr14	53795293	53795493	+	1	NA	NA	NA	458536	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.601990	
mm_133215.1	chr16	75859310	75859510	+	1	NA	NA	NA	49856	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.010000	0.432836	
mm_83830.1	chr9	54068465	54068665	-	1	NA	NA	NA	-154	NM_001033535	244882	Mm.325589	NM_001033535	ENSMUSG00000074345	Tnfaip8l3	9930029P06Rik|Gm517	tumor necrosis factor, alpha-induced protein 8-like 3	protein-coding	0.030000	0.676617	
mm_30765.1	chr4	15988897	15989097	+	1	NA	NA	NA	24880	NM_145950	209212	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.025000	0.417910	
mm_125696.1	chr15	66891363	66891563	+	1	NA	NA	NA	70	NM_018865	22402	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0.040000	0.587065	
mm_11832.1	chr2	45106179	45106379	+	1	NA	NA	NA	3998	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.010000	0.457711	
mm_17132.1	chr2	24935028	24935228	-	1	NA	NA	NA	153	NR_027876	215705	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	0.105000	0.701493	
mm_154213.1	chr19	59296806	59297006	-	1	NA	NA	NA	36028	NM_172523	214084	Mm.268797	NM_172523	ENSMUSG00000025094	Slc18a2	1110037L13Rik|9330105E13|Vmat2	solute carrier family 18 (vesicular monoamine), member 2	protein-coding	0.005000	0.328358	
mm_145340.1	chr18	56469127	56469327	+	1	NA	NA	NA	37095	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.025000	0.646766	
mm_86633.1	chr10	14046021	14046221	+	1	NA	NA	NA	79742	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.015000	0.402985	
mm_153121.1	chr19	33447701	33447901	-	1	NA	NA	NA	-55506	NM_001146342	67795	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	0.005000	0.412935	
mm_33720.1	chr4	134065548	134065748	+	1	NA	NA	NA	-2804	NM_001162970	230806	Mm.240080	NM_001162970	ENSMUSG00000012123	Aim1l	-	absent in melanoma 1-like	protein-coding	0.045000	0.631841	
mm_112496.1	chr13	6888656	6888856	+	1	NA	NA	NA	-239985	NM_001291071	56421	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.005000	0.457711	
mm_34172.1	chr4	140131774	140131974	+	1	NA	NA	NA	114937	NM_198610	230868	Mm.298731	NM_198610	ENSMUSG00000040972	Igsf21	BC055811|Gm141	immunoglobulin superfamily, member 21	protein-coding	0.010000	0.537313	
mm_91883.1	chr10	59858690	59858890	-	1	NA	NA	NA	-20801	NM_019965	56709	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.010000	0.557214	
mm_136410.1	chr16	93794800	93795000	-	1	NA	NA	NA	-37221	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.010000	0.542289	
mm_42838.1	chr5	122103078	122103278	+	1	NA	NA	NA	2198	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.040000	0.537313	
mm_146262.1	chr18	77825290	77825490	+	1	NA	NA	NA	30840	NM_013831	19201	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.030000	0.567164	
mm_85510.1	chr9	106247767	106247967	-	1	NA	NA	NA	87	NM_020559	11655	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	0.165000	0.716418	
mm_96438.1	chr11	67308483	67308683	+	1	NA	NA	NA	-18520	NM_001081250	544791	Mm.461064	NM_001081250	ENSMUSG00000060180	Myh13	MyHC-eo	myosin, heavy polypeptide 13, skeletal muscle	protein-coding	0.005000	0.477612	
mm_165487.1	chr2	164373272	164373472	-	1	NA	NA	NA	-16865	NM_011414	20568	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	-	secretory leukocyte peptidase inhibitor	protein-coding	0.010000	0.442786	
mm_63567.1	chr7	128116712	128116912	+	1	NA	NA	NA	-12756	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.005000	0.502488	
mm_145401.1	chr18	57354741	57354941	+	1	NA	NA	NA	108	NM_028447	73137	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	0.150000	0.761194	
mm_6770.1	chr1	84131109	84131309	-	1	NA	NA	NA	87752	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.412935	
mm_75239.1	chr8	39631213	39631413	-	1	NA	NA	NA	11365	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.005000	0.432836	
mm_81952.1	chr9	120555487	120555687	+	1	NA	NA	NA	15769	NM_178676	215446	Mm.76648	NM_178676	ENSMUSG00000041608	Entpd3	Cd39l3|HB6|NTPDase-3	ectonucleoside triphosphate diphosphohydrolase 3	protein-coding	0.005000	0.447761	
mm_163732.1	chr13	119649326	119649526	+	1	NA	NA	NA	25607	NM_020279	56838	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.040000	0.507463	
mm_18192.1	chr2	45113814	45114014	-	1	NA	NA	NA	-635	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.005000	0.412935	
mm_145291.1	chr18	53245661	53245861	+	1	NA	NA	NA	99	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.180000	0.771144	
mm_167239.1	chr8	19157750	19157950	+	1	NA	NA	NA	-37	NM_153115	78128	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	0.010000	0.417910	
mm_17427.1	chr2	27464474	27464674	-	1	NA	NA	NA	10824	NM_023336	67382	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	0.000000	0.487562	
mm_50654.1	chr6	51470356	51470556	+	1	NA	NA	NA	-160	NM_007624	12417	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	0.090000	0.701493	
mm_35314.1	chr4	25615312	25615512	-	1	NA	NA	NA	184591	NM_010243	14348	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.000000	0.333333	
mm_147182.1	chr18	36772278	36772478	-	1	NA	NA	NA	-6164	NM_173383	213236	Mm.234464	NM_173383	ENSMUSG00000044595	Dnd1	BC034897|RBMS4|Ter	DND microRNA-mediated repression inhibitor 1	protein-coding	0.040000	0.492537	
mm_142243.1	chr17	37482448	37482648	-	1	NA	NA	NA	981	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.020000	0.522388	
mm_90298.1	chr10	125551443	125551643	+	1	NA	NA	NA	-223008	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.005000	0.363184	
mm_157852.1	chrX	74428779	74428979	-	1	NA	NA	NA	282	NM_008062	14381	Mm.27210	NM_008062	ENSMUSG00000031400	G6pdx	G28A|G6pd|Gpdx	glucose-6-phosphate dehydrogenase X-linked	protein-coding	0.050000	0.587065	
mm_55355.1	chr6	56901730	56901930	-	1	NA	NA	NA	56	NM_001252374	107569	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0.020000	0.393035	
mm_68546.1	chr7	114237527	114237727	-	1	NA	NA	NA	17053	NM_033370	70349	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	0.015000	0.417910	
mm_24683.1	chr3	94933005	94933205	+	1	NA	NA	NA	22	NM_009150	20341	Mm.196558	NM_009150	ENSMUSG00000068874	Selenbp1	Lp56|Lpsb|SBP56	selenium binding protein 1	protein-coding	0.020000	0.562189	
mm_97541.1	chr11	78920727	78920927	+	1	NA	NA	NA	40	NM_010927	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.005000	0.522388	-34(GGGTATAAATAC,-,0.00)
mm_58564.1	chr7	4782850	4783050	+	1	NA	NA	NA	10	NM_030028	78052	Mm.160043	NM_030028	ENSMUSG00000013091	Tmem190	4930572D21Rik	transmembrane protein 190	protein-coding	0.005000	0.562189	
mm_126712.1	chr15	85329276	85329476	+	1	NA	NA	NA	-7005	NM_016843	54138	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.010000	0.492537	
mm_84631.1	chr9	70934483	70934683	-	1	NA	NA	NA	225	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.010000	0.472637	
mm_110483.1	chr12	51925306	51925506	-	1	NA	NA	NA	45915	NM_177171	320487	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	0.030000	0.527363	
mm_156573.1	chrX	151919701	151919901	+	1	NA	NA	NA	6587	NR_029753	723947		NR_029753	ENSMUSG00000065536	Mir98	Mirn98|mir-98|mmu-mir-98	microRNA 98	ncRNA	0.020000	0.492537	
mm_89110.1	chr10	84622288	84622488	+	1	NA	NA	NA	-49	NM_027423	70428	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	0.085000	0.592040	
mm_106156.1	chr11	116624147	116624347	-	1	NA	NA	NA	5	NM_001167680	217344	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.100000	0.726368	
mm_66195.1	chr7	34223649	34223849	-	1	NA	NA	NA	6587	NM_008155	14751	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	0.005000	0.437811	-65(GCCTATAAAAAT,-,0.00),-47(CCTTATAAGTTC,+,0.00)
mm_7350.1	chr1	106543201	106543401	-	1	NA	NA	NA	3330	NR_106164	102466254		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.015000	0.522388	
mm_75784.1	chr8	70042601	70042801	-	1	NA	NA	NA	33	NM_001167939	74549	Mm.269061	NM_028993	ENSMUSG00000031858	Mau2	9130404D08Rik|A930019L04Rik|C77863|C79014|Mau-2|mKIAA0892	MAU2 sister chromatid cohesion factor	protein-coding	0.105000	0.696517	
mm_69883.1	chr7	141636839	141637039	-	1	NA	NA	NA	16238	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.005000	0.467662	
mm_7481.1	chr1	120517565	120517765	-	1	NA	NA	NA	-12581	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.010000	0.442786	
mm_32026.1	chr4	95161418	95161618	+	1	NA	NA	NA	-109296	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.060000	0.646766	
mm_101309.1	chr11	22613366	22613566	-	1	NA	NA	NA	101183	NM_153596	103765	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.005000	0.407960	
mm_132945.1	chr16	49904642	49904842	+	1	NA	NA	NA	49088	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.020000	0.383085	
mm_134964.1	chr16	31935278	31935478	-	1	NA	NA	NA	1527	NM_172822	239827	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.020000	0.557214	
mm_152285.1	chr19	8929093	8929293	-	1	NA	NA	NA	163	NM_009073	19881	Mm.426094	NM_009073	ENSMUSG00000071648	Rom1	M101156|Rgsc1156|Rom-1|Rosp1|Tspan23	rod outer segment membrane protein 1	protein-coding	0.035000	0.646766	
mm_73756.1	chr8	114987750	114987950	+	1	NA	NA	NA	548198	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.015000	0.442786	
mm_20587.1	chr2	131159929	131160129	-	1	NA	NA	NA	-9	NM_026091	67326	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	0.110000	0.711443	
mm_22353.1	chr2	180935904	180936104	-	1	NA	NA	NA	6981	NM_001163247	329581	Mm.187879	NM_001163247	ENSMUSG00000038840	Birc7	E130019N06|KIAP|Livin|ML-IAP	baculoviral IAP repeat-containing 7 (livin)	protein-coding	0.010000	0.437811	
mm_135543.1	chr16	49790862	49791062	-	1	NA	NA	NA	-64692	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.015000	0.407960	
mm_94757.1	chr11	21148727	21148927	+	1	NA	NA	NA	57503	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.005000	0.333333	
mm_142399.1	chr17	45433473	45433673	-	1	NA	NA	NA	134	NM_152810	71702	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0.095000	0.601990	
mm_102053.1	chr11	52120868	52121068	-	1	NA	NA	NA	-5778	NR_037221	100526467		NR_037221	ENSMUSG00000092870	Mir3061	mir-3061|mmu-mir-3061	microRNA 3061	ncRNA	0.020000	0.363184	
mm_21595.1	chr2	164237635	164237835	-	1	NA	NA	NA	606	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.030000	0.477612	
mm_70768.1	chr8	21969675	21969875	+	1	NA	NA	NA	-821	NM_026459	67929	Mm.60688	NM_026459	ENSMUSG00000017049	Ccdc70	1700112P19Rik	coiled-coil domain containing 70	protein-coding	0.005000	0.472637	
mm_54437.1	chr6	34344988	34345188	-	1	NA	NA	NA	-9076	NM_008012	14187	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0.030000	0.517413	
mm_100510.1	chr11	120529989	120530189	+	1	NA	NA	NA	-638	NM_008101	14527	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.010000	0.547264	-25(GGGTTTAAGAGG,-,0.00)
mm_55213.1	chr6	52225124	52225324	-	1	NA	NA	NA	2146	NM_010456	15405	Mm.4694	NM_010456	ENSMUSG00000038227	Hoxa9	D6a9|Hox-1.7	homeobox A9	protein-coding	0.060000	0.621891	
mm_135011.1	chr16	32477531	32477731	-	1	NA	NA	NA	10248	NM_145932	106407	Mm.476915	NM_145932	ENSMUSG00000035699	Slc51a	AV001382|AW261577|D630035O19Rik|OSTalpha|Osta	solute carrier family 51, alpha subunit	protein-coding	0.015000	0.562189	
mm_63486.1	chr7	127748046	127748246	+	1	NA	NA	NA	1371	NM_172748	233902	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.010000	0.587065	
mm_66464.1	chr7	44928575	44928775	-	1	NA	NA	NA	815	NM_007458	11771	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	0.000000	0.472637	
mm_117292.1	chr13	66932838	66933038	-	1	NA	NA	NA	108	NM_008959	19210	Mm.281464	NM_008959	ENSMUSG00000021518	Ptdss1	AU044268|AW539008|PSS-1|mKIAA0024	phosphatidylserine synthase 1	protein-coding	0.110000	0.641791	
mm_115364.1	chr13	112987865	112988065	+	1	NA	NA	NA	163	NM_001081062	218630	Mm.25457	NM_001081062	ENSMUSG00000042417	Ccno	C86987|Ccnu|E130318K11|Ung2	cyclin O	protein-coding	0.115000	0.686567	
mm_63374.1	chr7	127209183	127209383	+	1	NA	NA	NA	384	NM_001347655	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.020000	0.502488	
mm_96196.1	chr11	62005303	62005503	+	1	NA	NA	NA	48640	NM_001310526	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.035000	0.587065	
mm_59808.1	chr7	29168298	29168498	+	1	NA	NA	NA	249	NM_182927	101809	Mm.377262	NM_182927	ENSMUSG00000037239	Spred3	AW047143|D130060H24Rik|Spred-3	sprouty-related, EVH1 domain containing 3	protein-coding	0.015000	0.552239	
mm_37875.1	chr4	132356850	132357050	-	1	NA	NA	NA	-3264	NR_003270	399101	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0.015000	0.432836	42(GGCTCTTAAAAA,-,0.00),43(GCTCTTAAAAAG,-,0.00),45(TCTTAAAAAGGC,+,0.00)
mm_26940.1	chr3	20265299	20265499	-	1	NA	NA	NA	10334	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.015000	0.402985	
mm_56619.1	chr6	112696286	112696486	-	1	NA	NA	NA	284	NM_021385	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.130000	0.646766	
mm_114492.1	chr13	69809781	69809981	+	1	NA	NA	NA	-1	NM_138596	28077	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	0.100000	0.696517	
mm_159912.1	chr6	48444930	48445130	-	1	NA	NA	NA	60	NM_001085415	68910	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	0.060000	0.696517	
mm_87078.1	chr10	29215919	29216119	+	1	NA	NA	NA	4376	NM_001162537	212448	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	0.010000	0.328358	-54(TAGTTTTAAAGC,-,0.00)
mm_165477.1	chr2	164333275	164333475	+	1	NA	NA	NA	610	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.045000	0.487562	
mm_99652.1	chr11	105589972	105590172	+	1	NA	NA	NA	86	NM_181071	77097	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.170000	0.810945	
mm_146090.1	chr18	73572762	73572962	+	1	NA	NA	NA	157	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.110000	0.741294	
mm_80784.1	chr9	95857602	95857802	+	1	NA	NA	NA	105	NM_019864	245000	Mm.212462	NM_019864	ENSMUSG00000032409	Atr	-	ataxia telangiectasia and Rad3 related	protein-coding	0.130000	0.716418	
mm_143953.1	chr17	86831181	86831381	-	1	NA	NA	NA	77417	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.010000	0.417910	
mm_150082.1	chr19	29387162	29387362	+	1	NA	NA	NA	19824	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.015000	0.432836	74(CCATTTATAAAG,+,0.00)
mm_3310.1	chr1	137899308	137899508	+	1	NA	NA	NA	-67047	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.020000	0.363184	
mm_45685.1	chr5	77355495	77355695	-	1	NA	NA	NA	45111	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.040000	0.557214	
mm_135918.1	chr16	67620711	67620911	-	1	NA	NA	NA	97	NM_001347247	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.135000	0.761194	
mm_143152.1	chr17	57222847	57223047	-	1	NA	NA	NA	5189	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.015000	0.562189	
mm_49136.1	chr6	8948960	8949160	+	1	NA	NA	NA	-959	NM_008751	18231	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.085000	0.621891	
mm_116578.1	chr13	47105593	47105793	-	1	NA	NA	NA	528	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.115000	0.701493	
mm_166093.1	chr4	141477421	141477621	-	1	NA	NA	NA	32848	NM_009541	22642	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0.060000	0.557214	
mm_21085.1	chr2	152951594	152951794	-	1	NA	NA	NA	-112	NM_001159376	252864	Mm.330671	NM_145744	ENSMUSG00000042662	Dusp15	AI851682|LMW-DSP10|T-DSP10	dual specificity phosphatase-like 15	protein-coding	0.105000	0.761194	
mm_118323.1	chr13	113614977	113615177	-	1	NA	NA	NA	3487	NM_130796	170625	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.010000	0.437811	
mm_23910.1	chr3	83043135	83043335	+	1	NA	NA	NA	6628	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.050000	0.547264	
mm_121941.1	chr14	24081853	24082053	-	1	NA	NA	NA	-6924	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.015000	0.447761	
mm_106597.1	chr11	120730782	120730982	-	1	NA	NA	NA	1139	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.030000	0.587065	
mm_103052.1	chr11	69816801	69817001	-	1	NA	NA	NA	1539	NM_175368	108803	Mm.73263	NM_175368	ENSMUSG00000044084	4933402P03Rik	-	RIKEN cDNA 4933402P03 gene	protein-coding	0.040000	0.606965	
mm_38533.1	chr4	141566267	141566467	-	1	NA	NA	NA	20205	NR_030695	320456	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.010000	0.527363	-56(CCCTAGATAAGC,-,0.00)
mm_29761.1	chr3	127162308	127162508	-	1	NA	NA	NA	1103	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.080000	0.597015	
mm_163769.1	chr13	120018004	120018204	+	1	NA	NA	NA	34100	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.005000	0.412935	
mm_98319.1	chr11	90249423	90249623	+	1	NA	NA	NA	47	NM_026178	67468	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.105000	0.800995	
mm_122314.1	chr14	36919280	36919480	-	1	NA	NA	NA	155	NM_001347503	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.025000	0.547264	
mm_37700.1	chr4	129335251	129335451	-	1	NA	NA	NA	19	NM_009030	19646	Mm.12145	NM_009030	ENSMUSG00000057236	Rbbp4	RBAP48|mRbAp48	retinoblastoma binding protein 4	protein-coding	0.130000	0.711443	
mm_95817.1	chr11	55204253	55204453	+	1	NA	NA	NA	13	NM_153139	215335	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0.080000	0.686567	
mm_123681.1	chr14	69503258	69503458	-	1	NA	NA	NA	9191	NM_173420	239167	Mm.259889	NM_173420	ENSMUSG00000047977	Synb	D930020E02Rik|syncytin-B	syncytin b	protein-coding	0.090000	0.666667	
mm_26963.1	chr3	22075989	22076189	-	1	NA	NA	NA	-563	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.135000	0.746269	
mm_168649.1	chr11	8605259	8605459	-	1	NA	NA	NA	59176	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.015000	0.442786	
mm_80344.1	chr9	75166232	75166432	+	1	NA	NA	NA	-65682	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.010000	0.402985	
mm_117838.1	chr13	98692068	98692268	-	1	NA	NA	NA	2663	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.005000	0.492537	
mm_105258.1	chr11	102356344	102356544	-	1	NA	NA	NA	8837	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.020000	0.587065	
mm_13546.1	chr2	112000236	112000436	+	1	NA	NA	NA	8848	NM_146449	258441	Mm.377504	NM_146449	ENSMUSG00000108827	Olfr1310	MOR245-3	olfactory receptor 1310	protein-coding	0.030000	0.562189	
mm_92396.1	chr10	76614329	76614529	-	1	NA	NA	NA	8975	NM_146007	12834	Mm.1949	NM_146007	ENSMUSG00000020241	Col6a2	Col6a-2	collagen, type VI, alpha 2	protein-coding	0.060000	0.562189	
mm_6071.1	chr1	60910634	60910834	-	1	NA	NA	NA	1709	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.005000	0.328358	
mm_75330.1	chr8	43180174	43180374	-	1	NA	NA	NA	-2848	NM_001160412	622117	Mm.390031	NM_001160412	ENSMUSG00000091490	Triml2	EG622117|Tu4	tripartite motif family-like 2	protein-coding	0.005000	0.462687	
mm_83531.1	chr9	46230208	46230408	-	1	NA	NA	NA	1678	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.035000	0.582090	
mm_22632.1	chr3	14770077	14770277	+	1	NA	NA	NA	8283	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.000000	0.353234	
mm_160940.1	chr11	94704399	94704599	-	1	NA	NA	NA	0	NM_001007584	432589	Mm.342314	NM_001007584	ENSMUSG00000056008	Gm11541	OTTMUSG00000002038	predicted gene 11541	protein-coding	0.005000	0.457711	
mm_137077.1	chr17	21008926	21009126	+	1	NA	NA	NA	85	NM_145483	224585	Mm.296036	NM_145483	ENSMUSG00000067942	Zfp160	6720480D16Rik|F11|HKr18|HZF5|KR18|mKIAA1611|mszf47	zinc finger protein 160	protein-coding	0.055000	0.562189	
mm_21174.1	chr2	154871388	154871588	-	1	NA	NA	NA	21418	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.010000	0.398010	
mm_99107.1	chr11	100133555	100133755	+	1	NA	NA	NA	2294	NM_008469	16665	Mm.440010	NM_008469	ENSMUSG00000054146	Krt15	AI528832|K15|Krt1-15	keratin 15	protein-coding	0.025000	0.572139	
mm_117957.1	chr13	99447270	99447470	-	1	NA	NA	NA	-34544	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.477612	
mm_118704.1	chr14	22164014	22164214	+	1	NA	NA	NA	144402	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.015000	0.402985	
mm_123262.1	chr14	61305190	61305390	-	1	NA	NA	NA	44	NR_033788	67355	Mm.193728	NR_033788	ENSMUSG00000101505	1700109G14Rik	1700126G13Rik	RIKEN cDNA 1700109G14 gene	ncRNA	0.010000	0.487562	
mm_120945.1	chr14	76690527	76690727	+	1	NA	NA	NA	13059	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.000000	0.378109	
mm_142947.1	chr17	56109627	56109827	-	1	NA	NA	NA	75	NM_020568	57435	Mm.12966	NM_020568	ENSMUSG00000002831	Plin4	S3-12|mKIAA1881	perilipin 4	protein-coding	0.020000	0.621891	-92(GACCCTATAAGG,-,0.00),-90(CCCTATAAGGCT,+,0.00)
mm_62365.1	chr7	100580190	100580390	+	1	NA	NA	NA	2840	NM_198831	52443	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e	mitochondrial ribosomal protein L48	protein-coding	0.030000	0.492537	
mm_8520.1	chr1	154883892	154884092	-	1	NA	NA	NA	-158072	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.025000	0.532338	
mm_77238.1	chr8	115705006	115705206	-	1	NA	NA	NA	1788	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.000000	0.388060	
mm_22172.1	chr2	173153919	173154119	-	1	NA	NA	NA	946	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.025000	0.552239	
mm_8882.1	chr1	162866366	162866566	-	1	NA	NA	NA	144	NM_010231	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.010000	0.427861	
mm_6354.1	chr1	71653072	71653272	-	1	NA	NA	NA	62	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.075000	0.676617	-33(TCCCATATAAGC,-,0.00)
mm_26778.1	chr3	9004361	9004561	-	1	NA	NA	NA	54	NM_009412	21985	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.160000	0.791045	
mm_90088.1	chr10	116914093	116914293	+	1	NA	NA	NA	-17314	NM_001033333	237558	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	0.035000	0.467662	
mm_107964.1	chr12	72745655	72745855	+	1	NA	NA	NA	-15456	NM_008910	19042	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.025000	0.567164	
mm_167204.1	chr7	143866789	143866989	+	1	NA	NA	NA	43722	NM_007856	13360	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	0.000000	0.537313	
mm_21105.1	chr2	153241617	153241817	-	1	NA	NA	NA	185	NM_080463	140484	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	0.070000	0.651741	
mm_18529.1	chr2	63184364	63184564	-	1	NA	NA	NA	-177	NM_133207	170738	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.045000	0.616915	
mm_4964.1	chr1	191275736	191275936	+	1	NA	NA	NA	42282	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.020000	0.452736	-45(GACCTTATGAGG,-,0.00)
mm_122889.1	chr14	54948064	54948264	-	1	NA	NA	NA	978	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.015000	0.562189	
mm_134370.1	chr16	17125038	17125238	-	1	NA	NA	NA	-32	NM_183287	70458	Mm.234165	NM_183287	ENSMUSG00000049916	2610318N02Rik	AL033325	RIKEN cDNA 2610318N02 gene	protein-coding	0.065000	0.641791	
mm_85685.1	chr9	107985778	107985978	-	1	NA	NA	NA	38	NM_026597	68176	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0.115000	0.736318	
mm_54352.1	chr6	31052420	31052620	-	1	NA	NA	NA	10227	NR_029744	387222		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0.015000	0.348259	
mm_54227.1	chr6	28134996	28135196	-	1	NA	NA	NA	-727	NM_008174	14823	Mm.320732	NM_008174	ENSMUSG00000024211	Grm8	A230002O04|Gprc1h|mGluR8	glutamate receptor, metabotropic 8	protein-coding	0.110000	0.696517	
mm_96168.1	chr11	61488243	61488443	+	1	NA	NA	NA	2899	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.010000	0.542289	
mm_44932.1	chr5	36317449	36317649	-	1	NA	NA	NA	15979	NR_106162	102465792		NR_106162	ENSMUSG00000098884	Mir7689	Gm27434|mmu-mir-7689	microRNA 7689	ncRNA	0.005000	0.487562	
mm_121500.1	chr14	121916058	121916258	+	1	NA	NA	NA	-384	NM_182806	110168	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	0.010000	0.487562	
mm_95386.1	chr11	49244155	49244355	+	1	NA	NA	NA	64	NM_001110148	17308	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.085000	0.761194	
mm_39918.1	chr5	31494657	31494857	+	1	NA	NA	NA	-4	NM_133756	74254	Mm.348649	NM_133756	ENSMUSG00000064037	Gpn1	2410004J02Rik|AI449615|MBDIN|NTPBP|Xab1	GPN-loop GTPase 1	protein-coding	0.085000	0.651741	
mm_22931.1	chr3	31149872	31150072	+	1	NA	NA	NA	52	NM_008770	18417	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.095000	0.716418	-61(GAGTTTAAAGAG,-,0.00)
mm_120645.1	chr14	70530466	70530666	+	1	NA	NA	NA	-255	NM_145219	213469	Mm.41708	NM_145219	ENSMUSG00000033595	Lgi3	AI841179|AW049851	leucine-rich repeat LGI family, member 3	protein-coding	0.025000	0.507463	
mm_38556.1	chr4	141642085	141642285	-	1	NA	NA	NA	-18351	NM_001013780	384071	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	0.010000	0.542289	
mm_135966.1	chr16	74828748	74828948	-	1	NA	NA	NA	-417936	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.000000	0.333333	
mm_910.1	chr1	54585649	54585849	+	1	NA	NA	NA	-28065	NM_001163314	241062	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.010000	0.422886	
mm_80110.1	chr9	70512114	70512314	+	1	NA	NA	NA	-8489	NM_033604	93836	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	0.020000	0.502488	
mm_51410.1	chr6	78380653	78380853	+	1	NA	NA	NA	44	NM_011259	19694	Mm.2552	NM_011259	ENSMUSG00000079516	Reg3a	AV063448	regenerating islet-derived 3 alpha	protein-coding	0.005000	0.422886	
mm_93658.1	chr10	117690333	117690533	-	1	NA	NA	NA	20325	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.040000	0.512438	
mm_82994.1	chr9	36637132	36637332	-	1	NA	NA	NA	1370	NM_001033325	235973	Mm.118804	NM_001033325	ENSMUSG00000070313	A630095E13Rik	Gm191|Pate14|Sslp-1|Sslp1	RIKEN cDNA A630095E13 gene	protein-coding	0.000000	0.383085	-11(AGCCTTAAAAGC,-,0.00),-10(GCCTTAAAAGCC,+,0.00),-9(CCTTAAAAGCCC,+,0.00)
mm_15875.1	chr2	164835587	164835787	+	1	NA	NA	NA	1914	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.045000	0.567164	
mm_84112.1	chr9	58370345	58370545	-	1	NA	NA	NA	-59	NR_040727	73529	Mm.490924	NR_040727	ENSMUSG00000100487	1700072B07Rik	-	RIKEN cDNA 1700072B07 gene	ncRNA	0.000000	0.492537	31(TCTCTTAAAAGG,-,0.00)
mm_109208.1	chr12	108677091	108677291	+	1	NA	NA	NA	18571	NR_029771	723909		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.005000	0.532338	
mm_127907.1	chr15	9527948	9528148	-	1	NA	NA	NA	1828	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.010000	0.368159	
mm_102553.1	chr11	61377969	61378169	-	1	NA	NA	NA	6	NM_026183	67473	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	0.115000	0.726368	
mm_105002.1	chr11	100374102	100374302	-	1	NA	NA	NA	-18061	NM_010404	15114	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.025000	0.587065	
mm_116970.1	chr13	56178586	56178786	-	1	NA	NA	NA	199	NM_145976	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.045000	0.552239	
mm_54537.1	chr6	36738783	36738983	-	1	NA	NA	NA	72478	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.005000	0.308458	
mm_90755.1	chr10	5550052	5550252	-	1	NA	NA	NA	540	NM_153399	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.040000	0.492537	
mm_126163.1	chr15	78449283	78449483	+	1	NA	NA	NA	19251	NM_027902	71753	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	0.020000	0.567164	
mm_36110.1	chr4	58867075	58867275	-	1	NA	NA	NA	45550	NM_172381	230249	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|mKIAA0368	expressed sequence AI314180	protein-coding	0.005000	0.333333	
mm_48123.1	chr5	137146601	137146801	-	1	NA	NA	NA	-30494	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.050000	0.572139	
mm_130910.1	chr15	102517746	102517946	-	1	NA	NA	NA	-346	NM_001253795	21357	Mm.291485	NM_009319	ENSMUSG00000023051	Tarbp2	Prbp|TRBP	TARBP2, RISC loading complex RNA binding subunit	protein-coding	0.040000	0.562189	
mm_154767.1	chrX	12587719	12587919	+	1	NA	NA	NA	60	NM_027439	70495	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	0.100000	0.631841	
mm_94573.1	chr11	11689993	11690193	+	1	NA	NA	NA	-84	NM_001301865	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.005000	0.452736	
mm_161660.1	chr17	8141541	8141741	-	1	NA	NA	NA	6147	NM_001083938	100037283	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	0.010000	0.343284	-76(CCTTATATAAAA,+,0.00)
mm_48701.1	chr5	147018256	147018456	-	1	NA	NA	NA	-54559	NM_001256100	76366	Mm.486234	NM_029581	ENSMUSG00000016510	Mtif3	2810012L14Rik|AI414549	mitochondrial translational initiation factor 3	protein-coding	0.025000	0.442786	
mm_60494.1	chr7	44478639	44478839	+	1	NA	NA	NA	-5778	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.010000	0.457711	
mm_125034.1	chr15	25755146	25755346	+	1	NA	NA	NA	-88052	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.005000	0.427861	
mm_64872.1	chr7	14333472	14333672	-	1	NA	NA	NA	-78702	NM_001081325	629219	Mm.439627	NM_001081325	ENSMUSG00000070810	Sult2a6	EG629219|Gm6957	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 6	protein-coding	0.010000	0.512438	
mm_151799.1	chr19	5424169	5424369	-	1	NA	NA	NA	710	NM_024176	66556	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	0.045000	0.601990	
mm_144544.1	chr18	28188975	28189175	+	1	NA	NA	NA	-371089	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.005000	0.338308	
mm_89231.1	chr10	87548892	87549092	+	1	NA	NA	NA	27197	NM_008777	18478	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0.015000	0.407960	
mm_22040.1	chr2	168206921	168207121	-	1	NA	NA	NA	91	NM_009628	11538	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0.120000	0.751244	
mm_83700.1	chr9	50659429	50659629	-	1	NA	NA	NA	251	NM_145614	235339	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	0.135000	0.691542	
mm_65132.1	chr7	19508249	19508449	-	1	NA	NA	NA	-18	NM_177692	232946	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.080000	0.582090	
mm_136747.1	chr17	8525082	8525282	+	1	NA	NA	NA	-1619	NM_001290707	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.060000	0.651741	
mm_91804.1	chr10	53751130	53751330	-	1	NA	NA	NA	-321	NM_001081428	75906	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0.140000	0.766169	
mm_53739.1	chr6	145123384	145123584	+	1	NA	NA	NA	1745	NM_008511	16970	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.010000	0.462687	
mm_73844.1	chr8	117503904	117504104	+	1	NA	NA	NA	5729	NM_172285	234779	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.010000	0.522388	
mm_14855.1	chr2	148681076	148681276	+	1	NA	NA	NA	56	NM_028986	74533	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0.085000	0.691542	
mm_60566.1	chr7	44481320	44481520	+	1	NA	NA	NA	-3097	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.472637	
mm_103140.1	chr11	70238370	70238570	-	1	NA	NA	NA	-556	NM_145758	104457	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	0.040000	0.507463	
mm_82108.1	chr9	123112825	123113025	+	1	NA	NA	NA	280	NM_026917	69035	Mm.28300	NM_026917	ENSMUSG00000025786	Zdhhc3	1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373	zinc finger, DHHC domain containing 3	protein-coding	0.095000	0.676617	
mm_160598.1	chr9	75311282	75311482	+	1	NA	NA	NA	-2686	NR_073186	14697	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0.030000	0.502488	
mm_70711.1	chr8	15060085	15060285	+	1	NA	NA	NA	2532	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.015000	0.547264	
mm_150812.1	chr19	44396317	44396517	+	1	NA	NA	NA	11292	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.557214	
mm_171821.1	chr5	14180517	14180717	-	1	NA	NA	NA	155341	NM_011348	20349	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	0.055000	0.542289	
mm_151963.1	chr19	5801595	5801795	-	1	NA	NA	NA	977	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.353234	
mm_151222.1	chr19	53700547	53700747	+	1	NA	NA	NA	23341	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.005000	0.353234	
mm_90976.1	chr10	13540218	13540418	-	1	NA	NA	NA	-12589	NM_025748	66757	Mm.331841	NM_025748	ENSMUSG00000019808	Adat2	4933426M09Rik|Deadc1	adenosine deaminase, tRNA-specific 2	protein-coding	0.015000	0.432836	-51(TACTTGAAAAGG,-,0.00)
mm_168404.1	chr11	30143010	30143210	-	1	NA	NA	NA	55147	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.030000	0.467662	
mm_150730.1	chr19	43711339	43711539	+	1	NA	NA	NA	21750	NM_053103	93685	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	0.040000	0.502488	-46(GTATTTAAAGGG,+,0.00),-46(GTATTTAAAGGG,-,0.00)
mm_120573.1	chr14	69171852	69172052	+	1	NA	NA	NA	-109	NR_045931	73554	Mm.320005	NR_045931	ENSMUSG00000092499	1700092C10Rik	-	RIKEN cDNA 1700092C10 gene	ncRNA	0.030000	0.552239	
mm_30384.1	chr3	152243975	152244175	-	1	NA	NA	NA	22245	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.000000	0.303483	
mm_161644.1	chr16	97851120	97851320	-	1	NA	NA	NA	7	NM_144789	114604	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	0.055000	0.641791	
mm_67410.1	chr7	80096484	80096684	-	1	NA	NA	NA	18766	NM_173011	269951	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.010000	0.427861	
mm_51583.1	chr6	83794909	83795109	+	1	NA	NA	NA	9	NM_001347315	56174	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	0.080000	0.656716	
mm_44741.1	chr5	31192965	31193165	-	1	NA	NA	NA	74	NM_001127355	13667	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	0.065000	0.656716	
mm_64461.1	chr7	142660646	142660846	+	1	NA	NA	NA	525	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.105000	0.686567	
mm_9497.1	chr1	173729940	173730140	-	1	NA	NA	NA	11769	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.000000	0.442786	
mm_115516.1	chr13	5822619	5822819	-	1	NA	NA	NA	35373	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.035000	0.492537	
mm_108915.1	chr12	100207478	100207678	+	1	NA	NA	NA	7434	NM_001313934	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.030000	0.492537	
mm_124800.1	chr15	8445315	8445515	+	1	NA	NA	NA	-952	NM_201232	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.055000	0.487562	
mm_172835.1	chr9	25252571	25252771	+	1	NA	NA	NA	232	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.140000	0.751244	
mm_156048.1	chrX	109095275	109095475	+	1	NA	NA	NA	-32	NM_019989	56726	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	0.035000	0.497512	
mm_140599.1	chr17	10319171	10319371	-	1	NA	NA	NA	90	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.190000	0.776119	
mm_128509.1	chr15	53277814	53278014	-	1	NA	NA	NA	68269	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.005000	0.238806	-19(GGGCTTTAAAAG,-,0.00),-18(GGCTTTAAAAGA,-,0.00),-17(GCTTTAAAAGAA,+,0.00)
mm_9386.1	chr1	172213284	172213484	-	1	NA	NA	NA	6511	NM_009813	12372	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.025000	0.606965	
mm_117969.1	chr13	99900688	99900888	-	1	NA	NA	NA	-105	NM_001081493	27220	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	0.095000	0.666667	
mm_104598.1	chr11	97142184	97142384	-	1	NA	NA	NA	4135	NR_106094	102466822		NR_106094	ENSMUSG00000099286	Mir7235	Gm27986|mmu-mir-7235	microRNA 7235	ncRNA	0.025000	0.621891	
mm_30018.1	chr3	135665206	135665406	-	1	NA	NA	NA	26241	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.005000	0.388060	
mm_65656.1	chr7	28137029	28137229	-	1	NA	NA	NA	7663	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.030000	0.582090	
mm_125013.1	chr15	25622668	25622868	+	1	NA	NA	NA	218	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.065000	0.656716	
mm_13187.1	chr2	93187508	93187708	+	1	NA	NA	NA	24	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.110000	0.756219	
mm_76696.1	chr8	94180174	94180374	-	1	NA	NA	NA	1185	NM_013602	17748	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.045000	0.472637	
mm_166632.1	chr6	78467789	78467989	+	1	NA	NA	NA	985	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.010000	0.447761	
mm_14205.1	chr2	127247918	127248118	+	1	NA	NA	NA	43	NM_175145	69470	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	0.065000	0.671642	
mm_2564.1	chr1	118321758	118321958	+	1	NA	NA	NA	15	NM_026472	67949	Mm.280311	NM_026472	ENSMUSG00000026377	Nifk	AI852665|C130020J04Rik|Mki67ip	nucleolar protein interacting with the FHA domain of MKI67	protein-coding	0.085000	0.587065	
mm_112706.1	chr13	18717584	18717784	+	1	NA	NA	NA	392	NM_172120	218035	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0.030000	0.383085	
mm_28027.1	chr3	83046649	83046849	-	1	NA	NA	NA	3114	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.035000	0.577114	
mm_67992.1	chr7	100894479	100894679	-	1	NA	NA	NA	-12170	NR_037289	100526508		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	0.125000	0.756219	
mm_139184.1	chr17	47594516	47594716	+	1	NA	NA	NA	1149	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.035000	0.552239	
mm_168865.1	chr12	30911490	30911690	-	1	NA	NA	NA	22	NM_021330	11431	Mm.359831	NM_021330	ENSMUSG00000044573	Acp1	4632432E04Rik|AI427468|Acp-1|LMW-PTP|Lmptp	acid phosphatase 1, soluble	protein-coding	0.110000	0.666667	
mm_58448.1	chr7	3303549	3303749	+	1	NA	NA	NA	117	NM_011102	18752	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	0.080000	0.666667	
mm_139419.1	chr17	53479262	53479462	+	1	NA	NA	NA	128	NM_025887	271457	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0.110000	0.661692	
mm_23819.1	chr3	80387446	80387646	+	1	NA	NA	NA	415245	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.000000	0.348259	
mm_60737.1	chr7	45439749	45439949	+	1	NA	NA	NA	5010	NM_030678	14936	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0.015000	0.577114	
mm_27814.1	chr3	78594494	78594694	-	1	NA	NA	NA	550293	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.015000	0.373134	
mm_21629.1	chr2	164277180	164277380	-	1	NA	NA	NA	1027	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.020000	0.437811	
mm_112183.1	chr12	113422153	113422353	-	1	NA	NA	NA	-67312	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.035000	0.542289	
mm_4969.1	chr1	191281373	191281573	+	1	NA	NA	NA	36645	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.015000	0.562189	
mm_50076.1	chr6	41339735	41339935	+	1	NA	NA	NA	-14270	NM_001038996	436522	Mm.443385	NM_001038996	ENSMUSG00000071521	Try10	-	trypsin 10	protein-coding	0.005000	0.402985	
mm_159498.1	chr4	43631698	43631898	+	1	NA	NA	NA	-137	NM_173788	230103	Mm.103477	NM_173788	ENSMUSG00000028469	Npr2	GC-B|GC-B2|GC-B3|cn|mNPR-B|pwe	natriuretic peptide receptor 2	protein-coding	0.055000	0.641791	
mm_115810.1	chr13	19395695	19395895	-	1	NA	NA	NA	18	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.120000	0.696517	
mm_68410.1	chr7	109637329	109637529	-	1	NA	NA	NA	-20282	NM_029811	76954	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.010000	0.527363	
mm_107123.1	chr12	19288401	19288601	+	1	NA	NA	NA	773991	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.135000	0.746269	
mm_27141.1	chr3	32616581	32616781	-	1	NA	NA	NA	-146	NM_013531	14696	Mm.139192	NM_013531	ENSMUSG00000027669	Gnb4	6720453A21Rik|G(beta)4	guanine nucleotide binding protein (G protein), beta 4	protein-coding	0.140000	0.786070	
mm_12361.1	chr2	69749845	69750045	+	1	NA	NA	NA	26857	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.050000	0.492537	
mm_6359.1	chr1	72146803	72147003	-	1	NA	NA	NA	65404	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.010000	0.437811	
mm_42345.1	chr5	114910917	114911117	+	1	NA	NA	NA	-12223	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.015000	0.517413	
mm_100258.1	chr11	117332181	117332381	+	1	NA	NA	NA	-32	NM_001113488	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.050000	0.656716	
mm_46081.1	chr5	92327954	92328154	-	1	NA	NA	NA	25	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.020000	0.472637	
mm_51694.1	chr6	86547882	86548082	+	1	NA	NA	NA	20581	NR_037961	72012	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.020000	0.472637	
mm_84144.1	chr9	59393107	59393307	-	1	NA	NA	NA	-39699	NM_175325	102774	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	0.010000	0.368159	
mm_72937.1	chr8	91363164	91363364	+	1	NA	NA	NA	49739	NM_011936	26383	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	0.005000	0.353234	
mm_69108.1	chr7	127021111	127021311	-	1	NA	NA	NA	0	NM_001102563	69017	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.060000	0.666667	
mm_11513.1	chr2	32586990	32587190	+	1	NA	NA	NA	12	NM_011373	20448	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0.105000	0.756219	
mm_19511.1	chr2	93956947	93957147	-	1	NA	NA	NA	53	NM_001145034	620695	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2|OTTMUSG00000014994	predicted gene 13889	protein-coding	0.150000	0.726368	-88(CGCTTTAAATGG,-,0.00),-34(GGCTATATAAGC,-,0.00)
mm_154081.1	chr19	56617324	56617524	-	1	NA	NA	NA	69163	NM_025811	66866	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.000000	0.457711	
mm_56100.1	chr6	87459181	87459381	-	1	NA	NA	NA	30287	NM_009756	12154	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	-	bone morphogenetic protein 10	protein-coding	0.005000	0.442786	
mm_40956.1	chr5	76928260	76928460	+	1	NA	NA	NA	-22846	NM_173765	231326	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	0.010000	0.447761	
mm_85479.1	chr9	105960583	105960783	-	1	NA	NA	NA	-40	NM_001167923	665033	Mm.39826	NM_001167923	ENSMUSG00000091345	Col6a5	Col29a1|EG665033|Gm7455	collagen, type VI, alpha 5	protein-coding	0.040000	0.641791	
mm_12779.1	chr2	79329101	79329301	+	1	NA	NA	NA	73775	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.010000	0.442786	
mm_55795.1	chr6	82751773	82751973	-	1	NA	NA	NA	22581	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.030000	0.472637	
mm_108146.1	chr12	76255363	76255563	+	1	NA	NA	NA	231	NM_138745	108156	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0.075000	0.597015	
mm_89641.1	chr10	96629909	96630109	+	1	NA	NA	NA	13008	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.005000	0.358209	
mm_29966.1	chr3	133467650	133467850	-	1	NA	NA	NA	76640	NM_001346736	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.000000	0.477612	
mm_142013.1	chr17	35200349	35200549	-	1	NA	NA	NA	1558	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.045000	0.582090	
mm_75487.1	chr8	48843573	48843773	-	1	NA	NA	NA	-168983	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.070000	0.606965	
mm_12347.1	chr2	69748911	69749111	+	1	NA	NA	NA	25923	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.025000	0.398010	
mm_151091.1	chr19	47731686	47731886	+	1	NA	NA	NA	30	NM_026377	67788	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	0.080000	0.671642	
mm_112549.1	chr13	12395289	12395489	+	1	NA	NA	NA	14	NM_144835	217995	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0.055000	0.547264	
mm_127600.1	chr15	102401835	102402035	+	1	NA	NA	NA	-4381	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.015000	0.507463	
mm_74726.1	chr8	17535135	17535335	-	1	NA	NA	NA	150	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.145000	0.781095	
mm_83056.1	chr9	37545078	37545278	-	1	NA	NA	NA	5923	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.040000	0.611940	
mm_147307.1	chr18	39734860	39735060	-	1	NA	NA	NA	-38537	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.015000	0.437811	
mm_83292.1	chr9	43200132	43200332	-	1	NA	NA	NA	5523	NM_011139	18988	Mm.436650	NM_011139	ENSMUSG00000032015	Pou2f3	Epoc-1|Oct-11a|Oct11|Otf-11|Otf11|Skin|Skin-1a|Skn-1a|Skn-li	POU domain, class 2, transcription factor 3	protein-coding	0.020000	0.467662	
mm_162700.1	chr10	21145062	21145262	+	1	NA	NA	NA	15822	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.040000	0.641791	
mm_6575.1	chr1	75216344	75216544	-	1	NA	NA	NA	2850	NM_001313723	22145	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	0.020000	0.567164	
mm_169497.1	chr14	76494914	76495114	-	1	NA	NA	NA	6578	NM_001177751	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.015000	0.532338	
mm_119529.1	chr14	47649011	47649211	+	1	NA	NA	NA	-200	NM_001347527	16709	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	0.055000	0.582090	
mm_83836.1	chr9	54237163	54237363	-	1	NA	NA	NA	-43821	NM_007810	13075	Mm.5199	NM_007810	ENSMUSG00000032274	Cyp19a1	Ar|ArKO|Cyp19|Int-5|Int5|p450arom	cytochrome P450, family 19, subfamily a, polypeptide 1	protein-coding	0.005000	0.437811	
mm_100087.1	chr11	115475874	115476074	+	1	NA	NA	NA	297	NM_177778	276905	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0.055000	0.636816	
mm_19070.1	chr2	77705968	77706168	-	1	NA	NA	NA	-2796	NM_001113399	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.000000	0.492537	
mm_2861.1	chr1	131696563	131696763	+	1	NA	NA	NA	7968	NM_001311096	226421	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0.020000	0.547264	
mm_147944.1	chr18	66291705	66291905	-	1	NA	NA	NA	33	NM_178793	320924	Mm.442049	NM_178793	ENSMUSG00000046318	Ccbe1	4933426F18Rik|9430093N24Rik|mKIAA1983	collagen and calcium binding EGF domains 1	protein-coding	0.110000	0.726368	
mm_76855.1	chr8	105349160	105349360	-	1	NA	NA	NA	1002	NM_001081332	277973	Mm.334766	NM_001081332	ENSMUSG00000014786	Slc9a5	Gm696	solute carrier family 9 (sodium/hydrogen exchanger), member 5	protein-coding	0.115000	0.726368	
mm_77943.1	chr9	7357774	7357974	+	1	NA	NA	NA	10500	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.432836	
mm_74059.1	chr8	122356141	122356341	+	1	NA	NA	NA	4505	NM_133202	170732	Mm.154808	NM_133202	ENSMUSG00000039079	Trhr2	TRH-R2	thyrotropin releasing hormone receptor 2	protein-coding	0.005000	0.532338	
mm_136394.1	chr16	93150342	93150542	-	1	NA	NA	NA	202747	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.040000	0.492537	80(CTCCATAAAGAG,-,0.00)
mm_75071.1	chr8	33843451	33843651	-	1	NA	NA	NA	86312	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.030000	0.507463	21(AGCCATAAGAGG,-,0.00)
mm_94544.1	chr11	9193322	9193522	+	1	NA	NA	NA	1480	NM_178259	268379	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.010000	0.472637	-32(CAGCTTATAAGC,-,0.00),-30(GCTTATAAGCAG,+,0.00)
mm_48266.1	chr5	137921520	137921720	-	1	NA	NA	NA	-1	NM_007819	13113	Mm.289886	NM_007819	ENSMUSG00000029727	Cyp3a13	IIIAm2	cytochrome P450, family 3, subfamily a, polypeptide 13	protein-coding	0.000000	0.482587	
mm_61117.1	chr7	54835682	54835882	+	1	NA	NA	NA	537	NM_178705	233271	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	0.070000	0.621891	
mm_66878.1	chr7	57509926	57510126	-	1	NA	NA	NA	-17	NM_176942	110886	Mm.273114	NM_176942	ENSMUSG00000055078	Gabra5	A230018I05Rik	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5	protein-coding	0.120000	0.711443	
mm_83011.1	chr9	36779744	36779944	-	1	NA	NA	NA	-12266	NM_008408	16430	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	0.000000	0.447761	
mm_58848.1	chr7	16843093	16843293	+	1	NA	NA	NA	128	NM_178900	101540	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.030000	0.582090	
mm_109040.1	chr12	104214444	104214644	+	1	NA	NA	NA	0	NM_001168294	238393	Mm.483584	NM_001033335	ENSMUSG00000066363	Serpina3f	2A1|BC049975	serine (or cysteine) peptidase inhibitor, clade A, member 3F	protein-coding	0.005000	0.522388	
mm_78075.1	chr9	15538700	15538900	+	1	NA	NA	NA	33305	NM_133214	170748	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	0.000000	0.472637	
mm_51984.1	chr6	92091284	92091484	+	1	NA	NA	NA	-34	NM_011630	22026	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.180000	0.805970	
mm_124078.1	chr14	78644313	78644513	-	1	NA	NA	NA	38	NR_104044	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.015000	0.482587	
mm_62492.1	chr7	101934033	101934233	+	1	NA	NA	NA	-276	NM_001162973	69358	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0.100000	0.651741	
mm_5682.1	chr1	43163782	43163982	-	1	NA	NA	NA	79	NM_010212	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.105000	0.706468	
mm_23290.1	chr3	52070034	52070234	+	1	NA	NA	NA	34872	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.030000	0.477612	
mm_95926.1	chr11	58307033	58307233	+	1	NA	NA	NA	64	NM_001040686	103836	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	0.110000	0.691542	
mm_104531.1	chr11	96289427	96289627	-	1	NA	NA	NA	2881	NM_010460	15415	Mm.390366	NM_010460	ENSMUSG00000038721	Hoxb7	AI325018|Hox-2.3	homeobox B7	protein-coding	0.075000	0.562189	
mm_160652.1	chr9	111373448	111373648	+	1	NA	NA	NA	61809	NM_001164659	320429	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	0.020000	0.537313	
mm_86603.1	chr10	13501070	13501270	+	1	NA	NA	NA	142	NM_025799	66848	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0.060000	0.661692	
mm_118502.1	chr14	13670793	13670993	+	1	NA	NA	NA	17	NM_177624	218739	Mm.39919	NM_177624	ENSMUSG00000044772	Sntn	A430083B19Rik	sentan, cilia apical structure protein	protein-coding	0.005000	0.507463	
mm_25760.1	chr3	123761174	123761374	+	1	NA	NA	NA	-70422	NR_121616	83398	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	0.015000	0.492537	
mm_52768.1	chr6	121137389	121137589	+	1	NA	NA	NA	-6467	NM_001270475	194401	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0.015000	0.552239	
mm_130103.1	chr15	89429319	89429519	-	1	NA	NA	NA	508	NR_037154	12651	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	0.110000	0.711443	
mm_95967.1	chr11	58917854	58918054	+	1	NA	NA	NA	-103	NM_138678	192194	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	0.020000	0.452736	-57(TCTTATATGCTC,+,0.00)
mm_136322.1	chr16	91964576	91964776	-	1	NA	NA	NA	-33046	NM_138597	28080	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.015000	0.487562	
mm_35751.1	chr4	45530684	45530884	-	1	NA	NA	NA	44	NM_001033306	230126	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0.145000	0.786070	
mm_41149.1	chr5	87929634	87929834	+	1	NA	NA	NA	4101	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.020000	0.417910	
mm_134754.1	chr16	23181499	23181699	-	1	NA	NA	NA	35063	NM_009605	11450	Mm.3969	NM_009605	ENSMUSG00000022878	Adipoq	30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1	adiponectin, C1Q and collagen domain containing	protein-coding	0.010000	0.457711	
mm_37496.1	chr4	123665407	123665607	-	1	NA	NA	NA	-374	NR_136925	102633214	Mm.399387	NR_136925		Gm12925	OTTMUSG00000009214	predicted gene 12925	ncRNA	0.040000	0.527363	
mm_166069.1	chr4	135152183	135152383	+	1	NA	NA	NA	31638	NM_019732	12399	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.105000	0.721393	
mm_118453.1	chr14	8368145	8368345	+	1	NA	NA	NA	10518	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.010000	0.542289	
mm_48835.1	chr5	149244593	149244793	-	1	NA	NA	NA	-20311	NM_001308462	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.020000	0.477612	
mm_166010.1	chr4	118024493	118024693	-	1	NA	NA	NA	-94830	NM_001284192	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.020000	0.507463	
mm_109268.1	chr12	109545419	109545619	+	1	NA	NA	NA	121	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.020000	0.452736	
mm_121933.1	chr14	23989284	23989484	-	1	NA	NA	NA	14821	NM_001253375	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.020000	0.358209	
mm_14257.1	chr2	128169655	128169855	+	1	NA	NA	NA	42180	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.015000	0.462687	
mm_75417.1	chr8	46735456	46735656	-	1	NA	NA	NA	3959	NR_045750	100503498	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0.015000	0.398010	
mm_94734.1	chr11	21048155	21048355	+	1	NA	NA	NA	-43069	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.010000	0.472637	
mm_173277.1	chrY	10374857	10375057	+	1	NA	NA	NA	822891	NM_001199331	100040022	Mm.485767	NM_001199331	ENSMUSG00000095172	Gm20822	-	predicted gene, 20822	protein-coding	0.060000	0.507463	-32(GGTTATAAAAGC,-,0.00)
mm_65172.1	chr7	19681332	19681532	-	1	NA	NA	NA	28	NM_007385	11425	Mm.477720	NM_007385	ENSMUSG00000074336	Apoc4	Acl|apo-CIV|apoC-IV	apolipoprotein C-IV	protein-coding	0.015000	0.592040	
mm_45273.1	chr5	64804034	64804234	-	1	NA	NA	NA	611	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.135000	0.796020	
mm_61620.1	chr7	80186615	80186815	+	1	NA	NA	NA	-126	NM_013659	20352	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.075000	0.611940	
mm_25969.1	chr3	132817965	132818165	+	1	NA	NA	NA	60531	NR_102297	101243624	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	0.000000	0.442786	61(GCTTTAAAACTA,+,0.00)
mm_1141.1	chr1	60705140	60705340	+	1	NA	NA	NA	-41148	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.005000	0.452736	
mm_80977.1	chr9	103183243	103183443	+	1	NA	NA	NA	18722	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.015000	0.587065	
mm_98075.1	chr11	86484582	86484782	+	1	NA	NA	NA	25	NM_029788	76892	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0.145000	0.751244	
mm_134866.1	chr16	28640707	28640907	-	1	NA	NA	NA	-40764	NR_030463	751543		NR_030463	ENSMUSG00000076064	Mir690	Mirn690|mir-690|mmu-mir-690	microRNA 690	ncRNA	0.005000	0.363184	
mm_80105.1	chr9	70370312	70370512	+	1	NA	NA	NA	35341	NR_049200	100885839		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0.030000	0.557214	
mm_101300.1	chr11	22286846	22287046	-	1	NA	NA	NA	-151	NM_001252515	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0.115000	0.771144	
mm_145354.1	chr18	56588251	56588451	+	1	NA	NA	NA	3	NM_026099	67343	Mm.87057	NM_026099	ENSMUSG00000032900	Tex43	1700065I17Rik|Tseg7	testis expressed 43	protein-coding	0.025000	0.487562	
mm_106485.1	chr11	120231493	120231693	-	1	NA	NA	NA	-1354	NM_001347621	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.070000	0.592040	
mm_47053.1	chr5	116288889	116289089	-	1	NA	NA	NA	-4	NM_177759	269693	Mm.10946	NM_177759	ENSMUSG00000043913	Ccdc60	AU018954|C130098D09	coiled-coil domain containing 60	protein-coding	0.070000	0.592040	
mm_111714.1	chr12	103707210	103707410	-	1	NA	NA	NA	-11781	NM_026687	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding	0.015000	0.557214	-34(GCATATAAAAAG,-,0.00)
mm_103499.1	chr11	76571530	76571730	-	1	NA	NA	NA	-246	NM_198895	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.050000	0.641791	
mm_117333.1	chr13	68999442	68999642	-	1	NA	NA	NA	-1	NM_153534	210044	Mm.390617	NM_153534	ENSMUSG00000021536	Adcy2	mKIAA1060	adenylate cyclase 2	protein-coding	0.185000	0.880597	
mm_55974.1	chr6	85865788	85865988	-	1	NA	NA	NA	3249	NM_053096	93673	Mm.24251	NM_053096	ENSMUSG00000033634	Nat8f2	Cml2	N-acetyltransferase 8 (GCN5-related) family member 2	protein-coding	0.005000	0.388060	-66(CTTTTTATGCCC,+,0.00),75(GGTCATAAATGG,-,0.00)
mm_142145.1	chr17	36006233	36006433	-	1	NA	NA	NA	11829	NR_015618	77810	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0.020000	0.542289	
mm_18392.1	chr2	60209699	60209899	-	1	NA	NA	NA	-137	NM_020575	57438	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.165000	0.796020	
mm_37493.1	chr4	123613727	123613927	-	1	NA	NA	NA	-2593	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.015000	0.472637	
mm_48022.1	chr5	136217269	136217469	-	1	NA	NA	NA	-18415	NM_025774	66801	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0.025000	0.557214	
mm_84266.1	chr9	62665954	62666154	-	1	NA	NA	NA	-11801	NM_176922	319480	Mm.34883	NM_176922	ENSMUSG00000032243	Itga11	4732459H24Rik	integrin alpha 11	protein-coding	0.015000	0.502488	
mm_41626.1	chr5	96963079	96963279	+	1	NA	NA	NA	-34510	NM_080708	140780	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.020000	0.467662	
mm_110059.1	chr12	21286122	21286322	-	1	NA	NA	NA	15	NM_008403	16413	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	0.095000	0.646766	
mm_77981.1	chr9	7871882	7872082	+	1	NA	NA	NA	1188	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.020000	0.507463	
mm_61755.1	chr7	82771314	82771514	+	1	NA	NA	NA	-15770	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.040000	0.641791	
mm_143924.1	chr17	85618477	85618677	-	1	NA	NA	NA	-181	NR_038082	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.065000	0.621891	
mm_5564.1	chr1	38836587	38836787	-	1	NA	NA	NA	-15472	NM_001029878	381338	Mm.487137	NM_028403	ENSMUSG00000048814	Lonrf2	2900060P06Rik|AI851349	LON peptidase N-terminal domain and ring finger 2	protein-coding	0.130000	0.671642	
mm_159882.1	chr6	18866173	18866373	+	1	NA	NA	NA	-45	NM_029202	75196	Mm.67665	NM_029202	ENSMUSG00000029517	Ankrd7	4930532L20Rik|AV278427	ankyrin repeat domain 7	protein-coding	0.015000	0.447761	
mm_44466.1	chr5	23386805	23387005	-	1	NA	NA	NA	47448	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.045000	0.482587	
mm_57846.1	chr6	129467560	129467760	-	1	NA	NA	NA	5119	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.348259	
mm_159747.1	chr5	75156145	75156345	+	1	NA	NA	NA	79	NM_001083316	18595	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.075000	0.641791	
mm_30528.1	chr4	3090385	3090585	+	1	NA	NA	NA	-81598	NM_001167534	100312470	Mm.480297	NM_001167534	ENSMUSG00000094798	Vmn1r2	Gm11776|OTTMUSG00000004179	vomeronasal 1 receptor 2	protein-coding	0.035000	0.373134	
mm_77951.1	chr9	7558357	7558557	+	1	NA	NA	NA	28	NM_008611	17394	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	0.010000	0.492537	-34(AGCTTTATAAGG,-,0.00),-32(CTTTATAAGGGA,+,0.00)
mm_25704.1	chr3	122419893	122420093	+	1	NA	NA	NA	213	NM_013867	29815	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0.120000	0.741294	
mm_126827.1	chr15	88862086	88862286	+	1	NA	NA	NA	-8	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.150000	0.686567	
mm_168288.1	chr11	101604744	101604944	+	1	NA	NA	NA	-5856	NM_001256318	666331	Mm.303457	NM_001256318		LOC666331	-	uncharacterized LOC666331	protein-coding	0.050000	0.477612	
mm_57688.1	chr6	128513740	128513940	-	1	NA	NA	NA	12880	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.020000	0.442786	
mm_18418.1	chr2	60722437	60722637	-	1	NA	NA	NA	66	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.020000	0.442786	
mm_151480.1	chr19	58676131	58676331	+	1	NA	NA	NA	5866	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.050000	0.547264	
mm_82127.1	chr9	123509959	123510159	+	1	NA	NA	NA	-19823	NM_030692	83493	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.015000	0.462687	
mm_169962.1	chr16	94855164	94855364	+	1	NA	NA	NA	1426	NM_001025590	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.005000	0.462687	
mm_110411.1	chr12	45573210	45573410	-	1	NA	NA	NA	-498827	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.015000	0.492537	
mm_123147.1	chr14	57099239	57099439	-	1	NA	NA	NA	5363	NM_008125	14619	Mm.390683	NM_008125	ENSMUSG00000046352	Gjb2	AI325222|Cnx26|Cx26|Gjb-2	gap junction protein, beta 2	protein-coding	0.015000	0.482587	
mm_37855.1	chr4	132220369	132220569	-	1	NA	NA	NA	120	NR_036572	664903	Mm.425212	NR_036572		Rps15a-ps4	Gm13253|Lethe|OTTMUSG00000011114	ribosomal protein S15A, pseudogene 4	pseudo	0.035000	0.537313	
mm_167681.1	chr9	80288021	80288221	+	1	NA	NA	NA	123087	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.040000	0.517413	
mm_88270.1	chr10	74967045	74967245	+	1	NA	NA	NA	-86	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	0.155000	0.781095	
mm_167801.1	chr9	123927851	123928051	-	1	NA	NA	NA	40741	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.010000	0.427861	
mm_7539.1	chr1	124485578	124485778	-	1	NA	NA	NA	-440119	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.288557	
mm_77996.1	chr9	8900317	8900517	+	1	NA	NA	NA	584	NM_008829	18667	Mm.12798	NM_008829	ENSMUSG00000031870	Pgr	9930019P03Rik|BB114106|ENSMUSG00000074510|NR3C3|PR|PR-A|PR-B	progesterone receptor	protein-coding	0.035000	0.621891	
mm_24085.1	chr3	87970980	87971180	+	1	NA	NA	NA	-13	NM_016701	18008	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46	nestin	protein-coding	0.065000	0.601990	-86(AACTCTAAAGGG,-,0.00),45(CCCCCTTAAAAG,-,0.00),46(CCCCTTAAAAGC,-,0.00),47(CCCTTAAAAGCT,+,0.00),48(CCTTAAAAGCTC,+,0.00)
mm_14499.1	chr2	132028249	132028449	+	1	NA	NA	NA	1639	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.015000	0.522388	
mm_153263.1	chr19	36925942	36926142	-	1	NA	NA	NA	-37	NM_001080706	107182	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0.110000	0.686567	
mm_107361.1	chr12	32839141	32839341	+	1	NA	NA	NA	15125	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.010000	0.427861	
mm_102513.1	chr11	60808725	60808925	-	1	NA	NA	NA	2440	NM_009171	20425	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	0.010000	0.502488	
mm_108134.1	chr12	76086634	76086834	+	1	NA	NA	NA	90525	NM_010157	13983	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0.025000	0.492537	
mm_158085.1	chrX	101267264	101267464	-	1	NA	NA	NA	891	NM_001308535	16186	Mm.2923	NM_013563	ENSMUSG00000031304	Il2rg	CD132|[g]c|gamma(c)|gc|p64	interleukin 2 receptor, gamma chain	protein-coding	0.010000	0.462687	88(GCTTAAAGACAC,+,0.00)
mm_40207.1	chr5	37046936	37047136	+	1	NA	NA	NA	-3821	NM_178394	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0.015000	0.537313	
mm_92172.1	chr10	67585866	67586066	-	1	NA	NA	NA	-37011	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.035000	0.517413	
mm_90153.1	chr10	118204725	118204925	+	1	NA	NA	NA	-139	NM_016971	50929	Mm.103585	NM_016971	ENSMUSG00000074695	Il22	IL-22|IL-22a|ILTIFa|Iltif	interleukin 22	protein-coding	0.015000	0.447761	-34(GGCTATAAAAGC,-,0.00)
mm_108619.1	chr12	85598158	85598358	+	1	NA	NA	NA	-847	NM_001205052	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.025000	0.482587	
mm_126297.1	chr15	79348299	79348499	+	1	NA	NA	NA	-3	NM_001304832	17133	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.035000	0.587065	
mm_51522.1	chr6	83165849	83166049	+	1	NA	NA	NA	25	NM_001198867	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.145000	0.771144	
mm_165613.1	chr3	55516278	55516478	+	1	NA	NA	NA	54620	NM_001195540	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.000000	0.442786	
mm_111570.1	chr12	101818428	101818628	-	1	NA	NA	NA	591	NM_011812	23876	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	0.030000	0.442786	
mm_4446.1	chr1	172555837	172556037	+	1	NA	NA	NA	-1	NM_177723	240916	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	0.020000	0.656716	
mm_96740.1	chr11	69800685	69800885	+	1	NA	NA	NA	931	NM_001291104	14166	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	0.035000	0.592040	
mm_117870.1	chr13	98890696	98890896	-	1	NA	NA	NA	246	NM_001048267	238799	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.065000	0.631841	
mm_154282.1	chr19	60812099	60812299	-	1	NA	NA	NA	629	NM_001167829	67894	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	0.030000	0.437811	42(GACTATAAAAGA,-,0.00)
mm_38644.1	chr4	143243181	143243381	-	1	NA	NA	NA	-30572	NM_001256380	110593	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0.015000	0.557214	
mm_99049.1	chr11	99045027	99045227	+	1	NA	NA	NA	3867	NM_010517	16010	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.000000	0.492537	
mm_120801.1	chr14	74746678	74746878	+	1	NA	NA	NA	14481	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.000000	0.373134	
mm_9543.1	chr1	173912836	173913036	-	1	NA	NA	NA	110	NM_001301745	381308	Mm.490248	NM_001033450	ENSMUSG00000026536	Ifi211	A730048F03|Ifi205b|Mnda|ifi-205-B	interferon activated gene 211	protein-coding	0.010000	0.487562	
mm_104707.1	chr11	98018236	98018436	-	1	NA	NA	NA	36	NM_001159320	12295	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	0.025000	0.626866	
mm_168714.1	chr12	102695678	102695878	-	1	NA	NA	NA	9091	NM_172584	217837	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.025000	0.606965	
mm_75375.1	chr8	45333099	45333299	-	1	NA	NA	NA	-3	NM_133969	102294	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0.065000	0.601990	
mm_82725.1	chr9	25151147	25151347	-	1	NA	NA	NA	534	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.130000	0.781095	
mm_164359.1	chr16	22654559	22654759	+	1	NA	NA	NA	2572	NM_138650	110197	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0.010000	0.522388	
mm_115705.1	chr13	14522350	14522550	-	1	NA	NA	NA	776	NM_001081348	94253	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.040000	0.606965	16(GCTTTTAGACAA,+,0.00)
mm_157911.1	chrX	78544858	78545058	-	1	NA	NA	NA	38847	NM_001164275	546336	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	0.005000	0.243781	
mm_67303.1	chr7	79386635	79386835	-	1	NA	NA	NA	292	NM_020599	19771	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	0.010000	0.532338	
mm_41096.1	chr5	87694636	87694836	+	1	NA	NA	NA	4689	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.502488	
mm_66251.1	chr7	35585490	35585690	-	1	NA	NA	NA	-8	NM_145840	243923	Mm.222680	NM_145840	ENSMUSG00000056043	Rgs9bp	R9AP|Rgs9-1bp	regulator of G-protein signalling 9 binding protein	protein-coding	0.070000	0.721393	
mm_87717.1	chr10	60106072	60106272	+	1	NA	NA	NA	-85	NM_052994	94214	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.040000	0.512438	
mm_36688.1	chr4	96591282	96591482	-	1	NA	NA	NA	103	NM_028979	74519	Mm.458387	NM_028979	ENSMUSG00000015224	Cyp2j9	8430417E17Rik	cytochrome P450, family 2, subfamily j, polypeptide 9	protein-coding	0.025000	0.562189	
mm_133278.1	chr16	77419652	77419852	+	1	NA	NA	NA	90424	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.005000	0.293532	-7(TTTTTTATGGTG,+,0.00)
mm_149738.1	chr19	22440922	22441122	+	1	NA	NA	NA	-7186	NM_177341	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.045000	0.497512	
mm_105428.1	chr11	103822625	103822825	-	1	NA	NA	NA	48550	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding	0.010000	0.368159	
mm_34696.1	chr4	152039236	152039436	+	1	NA	NA	NA	15	NM_028727	74035	Mm.275803	NM_028727	ENSMUSG00000028948	Nol9	4632412I24Rik|6030462G04Rik|AI449622|AW490720	nucleolar protein 9	protein-coding	0.135000	0.741294	
mm_71696.1	chr8	61600182	61600382	+	1	NA	NA	NA	-9113	NM_001293774	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.010000	0.457711	-33(ACCCATAAAAGG,-,0.00)
mm_73238.1	chr8	104142883	104143083	+	1	NA	NA	NA	-27530	NM_001141924	65115	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	0.025000	0.542289	
mm_71112.1	chr8	35765627	35765827	+	1	NA	NA	NA	60832	NM_027998	71908	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	0.080000	0.666667	
mm_2541.1	chr1	107511345	107511545	+	1	NA	NA	NA	22	NM_001174170	18788	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0.020000	0.447761	-54(TCTTATAAAACC,+,0.00)
mm_110697.1	chr12	69198278	69198478	-	1	NA	NA	NA	51	NM_027269	109065	Mm.107180	NM_027269	ENSMUSG00000020973	Dnaaf2	Ktu|TU54|kintoun|mknt	dynein, axonemal assembly factor 2	protein-coding	0.040000	0.567164	
mm_92624.1	chr10	80260909	80261109	-	1	NA	NA	NA	3	NM_001347119	14431	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0.080000	0.706468	
mm_100644.1	chr11	121846936	121847136	+	1	NA	NA	NA	16818	NM_029049	74675	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.000000	0.338308	
mm_86638.1	chr10	14087766	14087966	+	1	NA	NA	NA	121487	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.010000	0.378109	65(GATCTTTAAAGG,-,0.00),66(ATCTTTAAAGGC,-,0.00),67(TCTTTAAAGGCA,+,0.00)
mm_143511.1	chr17	72604567	72604767	-	1	NA	NA	NA	-360	NM_007439	11682	Mm.311854	NM_007439	ENSMUSG00000055471	Alk	CD246|Tcrz	anaplastic lymphoma kinase	protein-coding	0.120000	0.766169	
mm_54243.1	chr6	28256417	28256617	-	1	NA	NA	NA	5084	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.010000	0.412935	
mm_112286.1	chr12	114462641	114462841	-	1	NA	NA	NA	6725	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.000000	0.497512	
mm_119438.1	chr14	46387444	46387644	+	1	NA	NA	NA	3125	NM_001316360	12159	Mm.6813	NM_007554	ENSMUSG00000021835	Bmp4	Bmp-4|Bmp2b|Bmp2b-1|Bmp2b1	bone morphogenetic protein 4	protein-coding	0.105000	0.686567	
mm_109630.1	chr12	112767467	112767667	+	1	NA	NA	NA	6912	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.040000	0.606965	
mm_134137.1	chr16	10683459	10683659	-	1	NA	NA	NA	101977	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.015000	0.492537	
mm_52082.1	chr6	97828257	97828457	+	1	NA	NA	NA	21299	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.010000	0.472637	
mm_103280.1	chr11	72207146	72207346	-	1	NA	NA	NA	-308	NM_026559	52700	Mm.27670	NM_026559	ENSMUSG00000020803	Txndc17	4831443O22Rik|D11Ertd672e|TRP14|Txnl5	thioredoxin domain containing 17	protein-coding	0.080000	0.621891	
mm_19443.1	chr2	91976227	91976427	-	1	NA	NA	NA	-12764	NM_138306	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.055000	0.661692	
mm_59727.1	chr7	28788841	28789041	+	1	NA	NA	NA	-28	NM_177158	320435	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0.015000	0.587065	
mm_77612.1	chr8	123893540	123893740	-	1	NA	NA	NA	1135	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.045000	0.582090	
mm_65806.1	chr7	28977830	28978030	-	1	NA	NA	NA	3958	NM_001285943	73830	Mm.29714	NM_028659	ENSMUSG00000053565	Eif3k	1200009C21Rik|Eif3s12	eukaryotic translation initiation factor 3, subunit K	protein-coding	0.020000	0.542289	
mm_14067.1	chr2	122738512	122738712	+	1	NA	NA	NA	107	NM_019788	18457	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	0.100000	0.651741	
mm_21810.1	chr2	165090646	165090846	-	1	NA	NA	NA	4	NR_033448	72211	Mm.482899	NR_033448	ENSMUSG00000078935	1700025C18Rik	-	RIKEN cDNA 1700025C18 gene	ncRNA	0.010000	0.577114	
mm_20146.1	chr2	121506553	121506753	-	1	NA	NA	NA	3	NM_026220	67532	Mm.440764	NM_026220	ENSMUSG00000068479	Mfap1a	4432409M24Rik|Mfap1	microfibrillar-associated protein 1A	protein-coding	0.060000	0.572139	-94(CCCTTTAAGCGA,+,0.00)
mm_51827.1	chr6	89364532	89364732	+	1	NA	NA	NA	-2019	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.010000	0.572139	
mm_151118.1	chr19	47864548	47864748	+	1	NA	NA	NA	-897	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.005000	0.442786	
mm_114856.1	chr13	93304002	93304202	+	1	NA	NA	NA	345	NM_011982	26556	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0.175000	0.820896	
mm_119575.1	chr14	50807401	50807601	+	1	NA	NA	NA	270	NR_002142	85029		NR_002142	ENSMUSG00000092837	Rpph1	Gm24821|H1RNA|Rmrp5|Rpr	ribonuclease P RNA component H1	ncRNA	0.070000	0.592040	
mm_84038.1	chr9	57765794	57765994	-	1	NA	NA	NA	-34	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.090000	0.582090	
mm_78318.1	chr9	24341618	24341818	+	1	NA	NA	NA	161422	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.010000	0.402985	-51(GGCGTTTAAAGG,-,0.00),-50(GCGTTTAAAGGA,-,0.00)
mm_148356.1	chr18	84951335	84951535	-	1	NA	NA	NA	89	NM_025969	67105	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	tranlocase of inner mitochondrial membrane 21	protein-coding	0.040000	0.422886	
mm_58483.1	chr7	3617480	3617680	+	1	NA	NA	NA	207	NM_025348	66091	Mm.17851	NM_025348	ENSMUSG00000035674	Ndufa3	1010001M12Rik|1700022J01Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3	protein-coding	0.045000	0.592040	
mm_118848.1	chr14	25665841	25666041	+	1	NA	NA	NA	-28229	NM_134084	105675	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.025000	0.462687	
mm_78553.1	chr9	35424782	35424982	+	1	NA	NA	NA	-27194	NM_021339	57810	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	0.005000	0.502488	
mm_105949.1	chr11	115291446	115291646	-	1	NA	NA	NA	6000	NM_178035	328035	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804|OTTMUSG00000021749	fatty acid desaturase domain family, member 6	protein-coding	0.025000	0.527363	
mm_124960.1	chr15	13155133	13155333	+	1	NA	NA	NA	18442	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.000000	0.427861	
mm_139890.1	chr17	70849365	70849565	+	1	NA	NA	NA	325	NM_001164076	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.035000	0.557214	
mm_53831.1	chr6	148047317	148047517	+	1	NA	NA	NA	1	NM_178797	330450	Mm.447274	NM_178797	ENSMUSG00000030303	Far2	A230046P18|AW048109|BC055759|Mlstd1	fatty acyl CoA reductase 2	protein-coding	0.070000	0.631841	
mm_57219.1	chr6	122952446	122952646	-	1	NA	NA	NA	31	NM_001204241	73149	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.015000	0.512438	
mm_140604.1	chr17	10319505	10319705	-	1	NA	NA	NA	-244	NM_001159517	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.150000	0.631841	
mm_20411.1	chr2	129300111	129300311	-	1	NA	NA	NA	2841	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.000000	0.333333	
mm_59039.1	chr7	19342162	19342362	+	1	NA	NA	NA	-2809	NM_001127324	13870	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.110000	0.696517	-33(CACTATAAATAG,-,0.00)
mm_56358.1	chr6	93806307	93806507	-	1	NA	NA	NA	106556	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.005000	0.402985	
mm_10565.1	chr2	18055619	18055819	+	1	NA	NA	NA	482	NM_010804	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.030000	0.437811	
mm_106265.1	chr11	117968628	117968828	-	1	NA	NA	NA	638	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.060000	0.611940	
mm_136524.1	chr16	97459754	97459954	-	1	NA	NA	NA	3051	NM_010846	17857	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.005000	0.407960	
mm_101777.1	chr11	44950304	44950504	-	1	NA	NA	NA	166524	NR_045100	100504255	Mm.123608	NR_045100	ENSMUSG00000084773	Gm12159	OTTMUSG00000005475	predicted gene 12159	ncRNA	0.015000	0.502488	36(CCTTTTCTGGAG,+,0.00)
mm_109144.1	chr12	107141411	107141611	+	1	NA	NA	NA	-425187	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.010000	0.477612	
mm_68211.1	chr7	104400775	104400975	-	1	NA	NA	NA	-42229	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.005000	0.432836	
mm_145072.1	chr18	42053608	42053808	+	1	NA	NA	NA	-2	NM_172966	269016	Mm.45472	NM_172966	ENSMUSG00000057719	Sh3rf2	2310046K19|9130023G24Rik|AI452083|Ppp1r39|RNF158	SH3 domain containing ring finger 2	protein-coding	0.015000	0.537313	
mm_80.1	chr1	6734814	6735014	+	1	NA	NA	NA	4863	NR_045188	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.020000	0.487562	
mm_93251.1	chr10	95494693	95494893	-	1	NA	NA	NA	7134	NM_026065	67270	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|MRP-L31|PTD007|Rpml31	mitochondrial ribosomal protein L42	protein-coding	0.010000	0.432836	
mm_48427.1	chr5	140596464	140596664	-	1	NA	NA	NA	-10777	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.005000	0.522388	
mm_10670.1	chr2	20968983	20969183	+	1	NA	NA	NA	209	NR_033225	433408	Mm.386941	NR_033225		Gm13375	OTTMUSG00000011664	predicted gene 13375	ncRNA	0.070000	0.701493	
mm_60996.1	chr7	49276630	49276830	+	1	NA	NA	NA	30541	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.000000	0.462687	-95(CTTTTTATACAG,+,0.00)
mm_77831.1	chr9	4309712	4309912	+	1	NA	NA	NA	-4	NM_026962	69149	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	0.070000	0.587065	
mm_70489.1	chr8	12439270	12439470	+	1	NA	NA	NA	43851	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.005000	0.497512	
mm_144814.1	chr18	36287925	36288125	+	1	NA	NA	NA	6863	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.035000	0.572139	
mm_135102.1	chr16	35490686	35490886	-	1	NA	NA	NA	87	NM_028295	72599	Mm.71015	NM_028295	ENSMUSG00000022844	Pdia5	2700053F16Rik|AU015525|Pdir	protein disulfide isomerase associated 5	protein-coding	0.120000	0.741294	
mm_152093.1	chr19	6908762	6908962	-	1	NA	NA	NA	783	NM_012021	54683	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.010000	0.487562	70(CCCTTTATAAAA,-,0.00),72(CTTTATAAAAAG,-,0.00)
mm_69731.1	chr7	140856612	140856812	-	1	NA	NA	NA	-329	NM_018742	54399	Mm.155696	NM_018742	ENSMUSG00000025484	Bet1l	2610021K23Rik|Gs15	Bet1 golgi vesicular membrane trafficking protein like	protein-coding	0.075000	0.646766	
mm_9608.1	chr1	176213579	176213779	-	1	NA	NA	NA	263	NM_001195816	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	0.025000	0.522388	
mm_145474.1	chr18	60373516	60373716	+	1	NA	NA	NA	-2413	NM_021792	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.010000	0.517413	
mm_128688.1	chr15	61441572	61441772	-	1	NA	NA	NA	332779	NR_040350	432956	Mm.404918	NR_040350		D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	0.010000	0.417910	
mm_67181.1	chr7	73788251	73788451	-	1	NA	NA	NA	28152	NR_077222	100579147	Mm.109205	NR_077222	ENSMUSG00000074067	Gm10619	4932443D20|ENSMUSG00000074067	predicted gene 10619	ncRNA	0.030000	0.537313	
mm_51380.1	chr6	73633002	73633202	+	1	NA	NA	NA	-162081	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.005000	0.427861	
mm_20541.1	chr2	131063434	131063634	-	1	NA	NA	NA	280	NR_136922	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.075000	0.701493	
mm_141745.1	chr17	34187237	34187437	-	1	NA	NA	NA	-7	NM_013585	16912	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	0.100000	0.661692	
mm_55456.1	chr6	67376039	67376239	-	1	NA	NA	NA	-2	NM_008354	16162	Mm.188337	NM_008354	ENSMUSG00000018341	Il12rb2	A930027I18Rik|IL-12RB2|Ifnm	interleukin 12 receptor, beta 2	protein-coding	0.080000	0.666667	
mm_129278.1	chr15	77153544	77153744	-	1	NA	NA	NA	168	NM_001110830	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.040000	0.537313	-36(ACGTTTAAAGGG,-,0.00)
mm_14094.1	chr2	125164707	125164907	+	1	NA	NA	NA	12207	NM_001079690	20495	Mm.3914	NM_011389	ENSMUSG00000027202	Slc12a1	AI788571|D630042G03Rik|Nkcc2|mBSC1|urehr3	solute carrier family 12, member 1	protein-coding	0.025000	0.427861	
mm_3238.1	chr1	135851266	135851466	+	1	NA	NA	NA	10505	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.025000	0.542289	
mm_14758.1	chr2	144739930	144740130	+	1	NA	NA	NA	-83636	NM_025490	66328	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	0.010000	0.487562	
mm_51275.1	chr6	72131964	72132164	+	1	NA	NA	NA	-8867	NR_045165	71265	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.020000	0.452736	
mm_154914.1	chrX	21487222	21487422	+	1	NA	NA	NA	2698	NM_007429	11609	Mm.2679	NM_007429	ENSMUSG00000068122	Agtr2	AI316812|AW107640	angiotensin II receptor, type 2	protein-coding	0.005000	0.407960	
mm_8757.1	chr1	160351898	160352098	-	1	NA	NA	NA	-427	NM_001038621	29809	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0.035000	0.567164	
mm_155301.1	chrX	61185655	61185855	+	1	NA	NA	NA	-197	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.000000	0.393035	
mm_33795.1	chr4	134924291	134924491	+	1	NA	NA	NA	766	NM_023665	27981	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.115000	0.646766	
mm_163144.1	chr11	80977933	80978133	+	1	NA	NA	NA	119644	NM_029367	75622	Mm.26988	NM_029367	ENSMUSG00000053184	Spaca3	1700025M08Rik|ALLP17|Lyc3|SLLP1|mSLLP1	sperm acrosome associated 3	protein-coding	0.010000	0.507463	
mm_98810.1	chr11	97187606	97187806	+	1	NA	NA	NA	186	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.070000	0.716418	
mm_49420.1	chr6	29212316	29212516	+	1	NA	NA	NA	-119	NM_011829	23917	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine 5'-phosphate dehydrogenase 1	protein-coding	0.080000	0.691542	
mm_47617.1	chr5	125179044	125179244	-	1	NA	NA	NA	70	NM_001253905	20602	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.195000	0.855721	
mm_5541.1	chr1	38321889	38322089	-	1	NA	NA	NA	-192327	NM_019570	56210	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	0.015000	0.512438	
mm_152168.1	chr19	7297544	7297744	-	1	NA	NA	NA	-2197	NM_001080390	13728	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.005000	0.447761	
mm_160059.1	chr7	4812251	4812451	-	1	NA	NA	NA	-11	NM_133777	77891	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	0.140000	0.666667	-36(AGCTATAAAAGT,-,0.00)
mm_38511.1	chr4	141284066	141284266	-	1	NA	NA	NA	-17055	NM_010139	13836	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	0.020000	0.562189	
mm_94867.1	chr11	24078113	24078313	+	1	NA	NA	NA	157	NM_001159289	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.010000	0.373134	
mm_144108.1	chr18	4165789	4165989	+	1	NA	NA	NA	57	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.010000	0.452736	
mm_42266.1	chr5	114132120	114132320	+	1	NA	NA	NA	1064	NM_011677	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.020000	0.467662	-71(GCTTTTAAACCT,+,0.00),-52(TCTTTTAAACCA,+,0.00)
mm_97819.1	chr11	82963352	82963552	+	1	NA	NA	NA	-2771	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.000000	0.427861	
mm_158022.1	chrX	96163326	96163526	-	1	NA	NA	NA	67381	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.010000	0.492537	
mm_87493.1	chr10	51495672	51495872	+	1	NA	NA	NA	4874	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.005000	0.427861	-49(CCCTAAATGGAG,+,0.00)
mm_43293.1	chr5	134313585	134313785	+	1	NA	NA	NA	1075	NM_001080746	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.090000	0.616915	
mm_34709.1	chr4	152116181	152116381	+	1	NA	NA	NA	-62	NM_033042	85030	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0.055000	0.671642	
mm_4978.1	chr1	191339358	191339558	+	1	NA	NA	NA	13493	NM_025864	66950	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0.015000	0.422886	
mm_121143.1	chr14	101898418	101898618	+	1	NA	NA	NA	57895	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.020000	0.462687	
mm_160785.1	chr10	128237723	128237923	+	1	NA	NA	NA	-243	NM_011589	21853	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0.015000	0.507463	
mm_38123.1	chr4	134563227	134563427	-	1	NA	NA	NA	4524	NR_105829	102465216		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.015000	0.402985	
mm_24703.1	chr3	95127343	95127543	+	1	NA	NA	NA	2929	NM_016712	50874	Mm.71935	NM_016712	ENSMUSG00000005628	Tmod4	MTMOD|Sk-Tmod	tropomodulin 4	protein-coding	0.020000	0.522388	
mm_33791.1	chr4	134923986	134924186	+	1	NA	NA	NA	461	NM_023665	27981	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.155000	0.741294	
mm_52580.1	chr6	116650516	116650716	+	1	NA	NA	NA	-68	NM_145980	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.020000	0.527363	
mm_124735.1	chr15	6580870	6581070	+	1	NA	NA	NA	1123	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.035000	0.572139	
mm_165993.1	chr4	110687276	110687476	+	1	NA	NA	NA	289678	NM_030231	78933	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	0.000000	0.323383	32(TACTCTAAAAGC,-,0.00)
mm_141739.1	chr17	34122171	34122371	-	1	NA	NA	NA	336	NM_001204973	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.085000	0.741294	
mm_113889.1	chr13	49190230	49190430	+	1	NA	NA	NA	2783	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.030000	0.592040	
mm_94718.1	chr11	20543222	20543422	+	1	NA	NA	NA	69	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.080000	0.626866	
mm_6119.1	chr1	64121360	64121560	-	1	NA	NA	NA	-71	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.040000	0.547264	
mm_12905.1	chr2	84826940	84827140	+	1	NA	NA	NA	19	NM_013899	30059	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	0.065000	0.532338	
mm_53030.1	chr6	124493077	124493277	+	1	NA	NA	NA	64	NM_181344	232371	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0.000000	0.577114	-97(CTCCCTAAAGGG,-,0.00),-95(CCCTAAAGGGCC,+,0.00)
mm_57175.1	chr6	122848085	122848285	-	1	NA	NA	NA	7972	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.010000	0.452736	
mm_139250.1	chr17	47734233	47734433	+	1	NA	NA	NA	-2704	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.020000	0.592040	
mm_117380.1	chr13	73327868	73328068	-	1	NA	NA	NA	514	NR_033306	407785	Mm.29897	NM_010888	ENSMUSG00000021606	Ndufs6	BC059730|IP13	NADH dehydrogenase (ubiquinone) Fe-S protein 6	protein-coding	0.015000	0.567164	
mm_141788.1	chr17	34305622	34305822	-	1	NA	NA	NA	-145	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.000000	0.512438	
mm_147498.1	chr18	48444317	48444517	-	1	NA	NA	NA	399082	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.005000	0.447761	
mm_161715.1	chr17	25735820	25736020	+	1	NA	NA	NA	-120	NM_177822	328783	Mm.183275	NM_177822	ENSMUSG00000041062	Mslnl	4732467B22	mesothelin-like	protein-coding	0.005000	0.587065	
mm_133252.1	chr16	77301931	77302131	+	1	NA	NA	NA	-27297	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.005000	0.462687	
mm_2286.1	chr1	91350965	91351165	+	1	NA	NA	NA	-8	NM_027551	70788	Mm.68617	NM_027551	ENSMUSG00000026308	Klhl30	4631423F02Rik	kelch-like 30	protein-coding	0.005000	0.552239	82(GGTTCTATAAGG,-,0.00)
mm_143016.1	chr17	56476371	56476571	-	1	NA	NA	NA	9	NM_001252455	19280	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.140000	0.776119	
mm_71950.1	chr8	70493047	70493247	+	1	NA	NA	NA	16	NM_018827	12931	Mm.335584	NM_018827	ENSMUSG00000007888	Crlf1	CLF-1|CRLM-3|CRLM3|NR6|NR6.1	cytokine receptor-like factor 1	protein-coding	0.125000	0.751244	
mm_70385.1	chr8	10481055	10481255	+	1	NA	NA	NA	327244	NM_001319151	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.015000	0.512438	
mm_65129.1	chr7	19459144	19459344	-	1	NA	NA	NA	-750	NM_172279	232944	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.015000	0.507463	
mm_117129.1	chr13	60934720	60934920	-	1	NA	NA	NA	1746	NM_001145799	13024	Mm.482089	NM_007796	ENSMUSG00000044258	Ctla2a	Ctla-2a	cytotoxic T lymphocyte-associated protein 2 alpha	protein-coding	0.005000	0.442786	
mm_65773.1	chr7	28762033	28762233	-	1	NA	NA	NA	4511	NM_001306222	18036	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	0.030000	0.562189	
mm_40089.1	chr5	34543337	34543537	+	1	NA	NA	NA	72	NM_001145858	24055	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.015000	0.601990	
mm_157661.1	chrX	57392935	57393135	-	1	NA	NA	NA	1	NM_011252	19655	Mm.28275	NM_011252	ENSMUSG00000031134	Rbmx	hnRNP G	RNA binding motif protein, X chromosome	protein-coding	0.050000	0.482587	
mm_27015.1	chr3	26027161	26027361	-	1	NA	NA	NA	126046	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.010000	0.417910	
mm_36843.1	chr4	106678592	106678792	-	1	NA	NA	NA	-6	NM_001172073	72354	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	0.075000	0.616915	
mm_166534.1	chr6	30304514	30304714	+	1	NA	NA	NA	-75	NM_001169576	22214	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0.070000	0.616915	
mm_56189.1	chr6	88518720	88518920	-	1	NA	NA	NA	-20	NM_016906	53421	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0.155000	0.746269	
mm_21073.1	chr2	152830314	152830514	-	1	NA	NA	NA	303	NM_001289716	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.035000	0.492537	
mm_166108.1	chr4	146932412	146932612	+	1	NA	NA	NA	-89338	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.105000	0.726368	
mm_22147.1	chr2	172370800	172371000	-	1	NA	NA	NA	-103	NM_024199	67337	Mm.26944	NM_024199	ENSMUSG00000027498	Cstf1	1700057K18Rik|AI788832	cleavage stimulation factor, 3' pre-RNA, subunit 1	protein-coding	0.100000	0.592040	
mm_69292.1	chr7	128220774	128220974	-	1	NA	NA	NA	-14508	NM_009943	12862	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	0.010000	0.452736	-34(GCCTATTTAAAC,-,0.00)
mm_108984.1	chr12	102757654	102757854	+	1	NA	NA	NA	56	NM_001142939	100859931	Mm.291222	NM_001142939	ENSMUSG00000041716	Gm20604	AK010878-Moap1	predicted gene 20604	protein-coding	0.120000	0.681592	
mm_130666.1	chr15	100669448	100669648	-	1	NA	NA	NA	-48	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.060000	0.681592	
mm_115034.1	chr13	99247921	99248121	+	1	NA	NA	NA	63198	NM_001004149	238803	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.000000	0.452736	
mm_130169.1	chr15	93275033	93275233	-	1	NA	NA	NA	46	NM_001346785	223827	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.170000	0.781095	
mm_162271.1	chr1	10261602	10261802	+	1	NA	NA	NA	-29032	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.010000	0.497512	
mm_69470.1	chr7	133708959	133709159	-	1	NA	NA	NA	236	NM_009479	22276	Mm.3160	NM_009479	ENSMUSG00000030979	Uros	AI415298|UROIIIS|Uros3	uroporphyrinogen III synthase	protein-coding	0.070000	0.626866	
mm_62881.1	chr7	114768658	114768858	+	1	NA	NA	NA	22992	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	0.015000	0.492537	
mm_5594.1	chr1	39558213	39558413	-	1	NA	NA	NA	-9473	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.015000	0.393035	
mm_12237.1	chr2	68830668	68830868	+	1	NA	NA	NA	-30673	NM_172856	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.010000	0.398010	-31(GGCTATAAAAAT,-,0.00)
mm_84155.1	chr9	59486563	59486763	-	1	NA	NA	NA	-289	NM_019927	23806	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	0.140000	0.701493	
mm_63761.1	chr7	131112108	131112308	+	1	NA	NA	NA	34075	NM_173409	233918	Mm.78341	NM_173409	ENSMUSG00000013668	4933402N03Rik	4930412O05	RIKEN cDNA 4933402N03 gene	protein-coding	0.005000	0.497512	
mm_144835.1	chr18	36529107	36529307	+	1	NA	NA	NA	1055	NM_001271544	240215	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	0.015000	0.582090	
mm_131885.1	chr16	23225338	23225538	+	1	NA	NA	NA	-583	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.065000	0.641791	
mm_163017.1	chr11	46083608	46083808	+	1	NA	NA	NA	-18562	NR_106177	102465996		NR_106177	ENSMUSG00000098942	Mir8100	Gm27638|mmu-mir-8100	microRNA 8100	ncRNA	0.010000	0.517413	
mm_46040.1	chr5	91962993	91963193	-	1	NA	NA	NA	-25	NM_001271797	68098	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0.145000	0.756219	
mm_47774.1	chr5	131616505	131616705	-	1	NA	NA	NA	-263664	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.075000	0.601990	
mm_103050.1	chr11	69813861	69814061	-	1	NA	NA	NA	4479	NM_175368	108803	Mm.73263	NM_175368	ENSMUSG00000044084	4933402P03Rik	-	RIKEN cDNA 4933402P03 gene	protein-coding	0.005000	0.567164	
mm_31444.1	chr4	48585136	48585336	+	1	NA	NA	NA	43	NM_021436	230157	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0.175000	0.786070	
mm_18228.1	chr2	51678088	51678288	-	1	NA	NA	NA	50677	NM_199158	387511	Mm.377918	NM_199158	ENSMUSG00000056115	Tas2r134	T2R134|Tas2r34	taste receptor, type 2, member 134	protein-coding	0.000000	0.378109	-35(GCCTCTTAAAAC,-,0.00),-34(CCTCTTAAAACC,+,0.00),8(TTTTATAAAGGC,+,0.00)
mm_153846.1	chr19	46332821	46333021	-	1	NA	NA	NA	4737	NM_133694	68431	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	0.010000	0.597015	
mm_29743.1	chr3	126922931	126923131	-	1	NA	NA	NA	20355	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.020000	0.497512	
mm_107579.1	chr12	44525549	44525749	+	1	NA	NA	NA	196764	NM_001146031	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.020000	0.492537	
mm_115772.1	chr13	19307937	19308137	-	1	NA	NA	NA	87776	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.378109	
mm_167124.1	chr7	122402024	122402224	-	1	NA	NA	NA	112999	NM_008855	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.010000	0.537313	
mm_15200.1	chr2	154206402	154206602	+	1	NA	NA	NA	6122	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.035000	0.611940	
mm_60694.1	chr7	45175060	45175260	+	1	NA	NA	NA	1857	NR_106022	102465638		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0.020000	0.587065	
mm_33565.1	chr4	131921103	131921303	+	1	NA	NA	NA	-568	NM_001201367	623230	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.060000	0.616915	
mm_51849.1	chr6	90364103	90364303	+	1	NA	NA	NA	-5291	NM_173002	80292	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	0.010000	0.452736	
mm_100816.1	chr11	5129140	5129340	-	1	NA	NA	NA	22982	NM_080595	140703	Mm.840	NM_080595	ENSMUSG00000034164	Emid1	AW122071|CO-5|Emu1	EMI domain containing 1	protein-coding	0.020000	0.572139	
mm_62151.1	chr7	97132580	97132780	+	1	NA	NA	NA	50929	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.010000	0.388060	
mm_66191.1	chr7	34209802	34210002	-	1	NA	NA	NA	-13255	NM_026549	68079	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.015000	0.517413	
mm_173304.1	chrY	74573954	74574154	+	1	NA	NA	NA	-621802	NM_201530	382301	Mm.304354	NM_201530	ENSMUSG00000101155	Sly	-	Sycp3 like Y-linked	protein-coding	0.035000	0.492537	
mm_47752.1	chr5	131168480	131168680	-	1	NA	NA	NA	138942	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.005000	0.368159	27(GCTTATAGGGGA,+,0.00)
mm_151341.1	chr19	55895344	55895544	+	1	NA	NA	NA	123	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.065000	0.582090	
mm_134701.1	chr16	22657154	22657354	-	1	NA	NA	NA	-23	NM_001346673	110197	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0.095000	0.691542	
mm_30726.1	chr4	13751280	13751480	+	1	NA	NA	NA	83	NM_001111027	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.095000	0.601990	
mm_149680.1	chr19	20492512	20492712	+	1	NA	NA	NA	-103	NR_015502	320092	Mm.482524	NR_015502		E030003E18Rik	1700127G21Rik	RIKEN cDNA E030003E18 gene	ncRNA	0.000000	0.492537	
mm_140771.1	chr17	17826767	17826967	-	1	NA	NA	NA	-3321	NR_029536	387230		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	0.035000	0.606965	
mm_14887.1	chr2	148872771	148872971	+	1	NA	NA	NA	2641	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.015000	0.477612	
mm_74165.1	chr8	123418005	123418205	+	1	NA	NA	NA	6541	NM_023279	22152	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	0.045000	0.552239	
mm_84225.1	chr9	61946660	61946860	-	1	NA	NA	NA	39	NM_024245	71819	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.120000	0.711443	
mm_13643.1	chr2	114050195	114050395	+	1	NA	NA	NA	2580	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.025000	0.502488	
mm_138886.1	chr17	43389487	43389687	+	1	NA	NA	NA	121	NM_001081178	224792	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	0.030000	0.567164	
mm_51985.1	chr6	92091314	92091514	+	1	NA	NA	NA	-4	NM_011630	22026	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.175000	0.781095	
mm_148142.1	chr18	77040104	77040304	-	1	NA	NA	NA	7092	NM_027721	71206	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	0.015000	0.487562	13(GCTTATAGAGCT,+,0.00)
mm_73289.1	chr8	104926210	104926410	+	1	NA	NA	NA	50	NM_172759	234673	Mm.441134	NM_172759	ENSMUSG00000031886	Ces2e	9030624L02Rik|Ces5	carboxylesterase 2E	protein-coding	0.005000	0.457711	
mm_58487.1	chr7	3645194	3645394	+	1	NA	NA	NA	25	NM_146176	232791	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	0.105000	0.676617	
mm_87241.1	chr10	40883741	40883941	+	1	NA	NA	NA	307	NM_031877	83767	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	0.175000	0.815920	
mm_67166.1	chr7	73550561	73550761	-	1	NA	NA	NA	7734	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.005000	0.462687	-44(CTTTTTAGACCA,+,0.00)
mm_20526.1	chr2	130906190	130906390	-	1	NA	NA	NA	106	NR_015523	613258	Mm.271990	NR_015523		A730017L22Rik	-	RIKEN cDNA A730017L22 gene	ncRNA	0.065000	0.587065	
mm_133768.1	chr16	94569829	94570029	+	1	NA	NA	NA	-277	NM_007890	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.150000	0.766169	
mm_82036.1	chr9	122117253	122117453	+	1	NA	NA	NA	87	NM_133741	20623	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0.165000	0.761194	
mm_73031.1	chr8	94179733	94179933	+	1	NA	NA	NA	744	NM_013602	17748	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.030000	0.601990	
mm_153948.1	chr19	47580790	47580990	-	1	NA	NA	NA	871	NM_001164639	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0.010000	0.383085	
mm_73827.1	chr8	117459681	117459881	+	1	NA	NA	NA	516	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.040000	0.611940	
mm_168610.1	chr1	175978834	175979034	-	1	NA	NA	NA	58605	NM_001290692	226720	Mm.11282	NM_001290692	ENSMUSG00000104158	Becn2	Beclin-2|Gm104	beclin 2	protein-coding	0.050000	0.507463	
mm_173305.1	chrY	77701164	77701364	+	1	NA	NA	NA	1135455	NM_001160135	100039574	Mm.458579	NM_001160135	ENSMUSG00000094739	Gm20806	-	predicted gene, 20806	protein-coding	0.005000	0.388060	
mm_97284.1	chr11	76179577	76179777	+	1	NA	NA	NA	-47	NM_026664	68299	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	0.065000	0.592040	
mm_9652.1	chr1	177643040	177643240	-	1	NA	NA	NA	-197	NR_037994	75589	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	0.015000	0.532338	
mm_124820.1	chr15	9071517	9071717	+	1	NA	NA	NA	357	NM_001040395	68646	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.160000	0.781095	
mm_77603.1	chr8	123892919	123893119	-	1	NA	NA	NA	1756	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.045000	0.606965	
mm_18914.1	chr2	76736765	76736965	-	1	NA	NA	NA	61550	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.477612	
mm_24722.1	chr3	95281238	95281438	+	1	NA	NA	NA	738	NM_173347	229589	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	0.065000	0.666667	
mm_88178.1	chr10	69925676	69925876	+	1	NA	NA	NA	244	NM_009670	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.015000	0.472637	-6(GCTTTTATGTCA,+,0.00)
mm_115002.1	chr13	98263182	98263382	+	1	NA	NA	NA	206	NM_001271388	68558	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	0.085000	0.646766	
mm_48772.1	chr5	148505755	148505955	-	1	NA	NA	NA	46933	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.025000	0.502488	
mm_54333.1	chr6	30641693	30641893	-	1	NA	NA	NA	2575	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.020000	0.512438	
mm_30708.1	chr4	12095568	12095768	+	1	NA	NA	NA	6298	NM_198957	77604	Mm.474129	NM_198957	ENSMUSG00000052137	Rbm12b2	AV299215|C430048L16Rik|Rbm12bb	RNA binding motif protein 12 B2	protein-coding	0.005000	0.402985	
mm_14037.1	chr2	122160619	122160819	+	1	NA	NA	NA	19	NM_080510	70928	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	0.015000	0.482587	
mm_82814.1	chr9	30921115	30921315	-	1	NA	NA	NA	-265	NM_001329420	235130	Mm.65867	NM_001024139	ENSMUSG00000033453	Adamts15	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15	protein-coding	0.010000	0.412935	
mm_22587.1	chr3	13472360	13472560	+	1	NA	NA	NA	805	NM_001163328	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.020000	0.348259	
mm_147416.1	chr18	46141545	46141745	-	1	NA	NA	NA	57173	NM_001170855	28105	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.005000	0.497512	
mm_163489.1	chr12	109453540	109453740	+	1	NA	NA	NA	185	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.100000	0.721393	
mm_96607.1	chr11	69091415	69091615	+	1	NA	NA	NA	2987	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.010000	0.557214	
mm_114844.1	chr13	92683284	92683484	+	1	NA	NA	NA	72246	NM_172588	218442	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.020000	0.462687	
mm_105727.1	chr11	109011894	109012094	-	1	NA	NA	NA	91645	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.070000	0.597015	
mm_23424.1	chr3	58692517	58692717	+	1	NA	NA	NA	28	NR_045167	71301	Mm.254475	NR_045167	ENSMUSG00000097725	4930593A02Rik	4933440I01Rik	RIKEN cDNA 4930593A02 gene	ncRNA	0.095000	0.641791	
mm_93426.1	chr10	108879678	108879878	-	1	NA	NA	NA	131197	NM_009306	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding	0.025000	0.467662	
mm_94849.1	chr11	23771055	23771255	+	1	NA	NA	NA	-185	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.160000	0.736318	
mm_120778.1	chr14	74641208	74641408	+	1	NA	NA	NA	468	NM_172812	15558	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	0.055000	0.492537	
mm_47158.1	chr5	120683338	120683538	-	1	NA	NA	NA	28231	NM_008052	14357	Mm.1645	NM_008052	ENSMUSG00000029603	Dtx1	Fxit1|mKIAA4160	deltex 1, E3 ubiquitin ligase	protein-coding	0.040000	0.631841	
mm_31692.1	chr4	62379916	62380116	+	1	NA	NA	NA	19315	NM_175090	20529	Mm.248637	NM_175090	ENSMUSG00000066150	Slc31a1	4930445G01Rik|AI787263|AU016967|Ctr1	solute carrier family 31, member 1	protein-coding	0.005000	0.328358	-74(GCTTTAATGGGT,+,0.00)
mm_35899.1	chr4	49597309	49597509	-	1	NA	NA	NA	461	NM_025944	67063	Mm.490285	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	0.115000	0.776119	
mm_5098.1	chr1	4910142	4910342	-	1	NA	NA	NA	51914	NM_001159751	21399	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.000000	0.442786	
mm_158735.1	chrX	164027915	164028115	-	1	NA	NA	NA	-5	NM_181315	56078	Mm.180953	NM_181315	ENSMUSG00000031373	Car5b	7330410H16Rik|CAVB|Ca5b|CarVb|D730005F19Rik	carbonic anhydrase 5b, mitochondrial	protein-coding	0.045000	0.597015	
mm_61484.1	chr7	75697270	75697470	+	1	NA	NA	NA	-150968	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.005000	0.388060	
mm_115395.1	chr13	113794444	113794644	+	1	NA	NA	NA	36	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.090000	0.597015	
mm_59309.1	chr7	25282105	25282305	+	1	NA	NA	NA	26	NM_027882	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.140000	0.746269	
mm_45828.1	chr5	87694532	87694732	-	1	NA	NA	NA	4793	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.000000	0.507463	
mm_34034.1	chr4	138147318	138147518	+	1	NA	NA	NA	-8900	NR_126429	73563	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	0.015000	0.447761	
mm_150131.1	chr19	30035418	30035618	+	1	NA	NA	NA	5005	NM_144873	109113	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0.015000	0.502488	
mm_7934.1	chr1	133912338	133912538	-	1	NA	NA	NA	-4439	NM_001160420	269120	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	0.025000	0.522388	
mm_169889.1	chr16	4683995	4684195	+	1	NA	NA	NA	25	NM_001135112	83945	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	0.120000	0.691542	
mm_131213.1	chr16	8829948	8830148	+	1	NA	NA	NA	-52	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.145000	0.741294	
mm_75519.1	chr8	54886882	54887082	-	1	NA	NA	NA	-67746	NM_153581	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.010000	0.457711	
mm_72422.1	chr8	82401851	82402051	+	1	NA	NA	NA	635	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.010000	0.417910	
mm_39878.1	chr5	31077082	31077282	+	1	NA	NA	NA	16345	NM_011773	22784	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.025000	0.611940	
mm_10274.1	chr2	9882122	9882322	+	1	NA	NA	NA	976	NR_024257	381347	Mm.441450	NR_024257		4930412O13Rik	ENSMUSG00000075535|Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.045000	0.532338	
mm_159036.1	chr1	178187549	178187749	+	1	NA	NA	NA	232	NM_024282	78825	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	0.080000	0.716418	
mm_92411.1	chr10	76723329	76723529	-	1	NA	NA	NA	2615	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.055000	0.582090	
mm_144190.1	chr18	7869218	7869418	+	1	NA	NA	NA	121	NM_153085	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.110000	0.741294	
mm_114314.1	chr13	59875951	59876151	+	1	NA	NA	NA	-52904	NM_153538	214290	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.025000	0.487562	
mm_64036.1	chr7	140770844	140771044	+	1	NA	NA	NA	7112	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.010000	0.462687	
mm_98013.1	chr11	84818751	84818951	+	1	NA	NA	NA	664	NM_145433	217038	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik|ENSMUSG00000054212	mitochondrial rRNA methyltransferase 1	protein-coding	0.060000	0.616915	
mm_48436.1	chr5	140623327	140623527	-	1	NA	NA	NA	16086	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.060000	0.681592	
mm_20491.1	chr2	130274156	130274356	-	1	NA	NA	NA	-156	NM_024193	67134	Mm.29363	NM_024193	ENSMUSG00000027405	Nop56	2310044F10Rik|Nol5a	NOP56 ribonucleoprotein	protein-coding	0.105000	0.666667	
mm_104961.1	chr11	100143475	100143675	-	1	NA	NA	NA	124	NM_001313963	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.010000	0.467662	
mm_20885.1	chr2	148851027	148851227	-	1	NA	NA	NA	-193	NM_029960	77705	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	0.010000	0.512438	
mm_145103.1	chr18	44104223	44104423	+	1	NA	NA	NA	-200	NM_030061	78242	Mm.99782	NM_030061	ENSMUSG00000061144	Spink12	9230117E20Rik	serine peptidase inhibitor, Kazal type 12	protein-coding	0.000000	0.363184	
mm_71799.1	chr8	68008986	68009186	+	1	NA	NA	NA	-34512	NM_177698	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.005000	0.348259	
mm_86662.1	chr10	17802416	17802616	+	1	NA	NA	NA	6297	NM_138628	378431	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	0.000000	0.393035	
mm_67820.1	chr7	98178792	98178992	-	1	NA	NA	NA	-618	NM_007602	12337	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0.005000	0.517413	
mm_8844.1	chr1	162702141	162702341	-	1	NA	NA	NA	38315	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.010000	0.422886	
mm_51503.1	chr6	83117622	83117822	+	1	NA	NA	NA	2216	NM_020619	57377	Mm.28188	NM_020619	ENSMUSG00000030036	Mogs	1810017N02Rik|AI181835|Gcs1	mannosyl-oligosaccharide glucosidase	protein-coding	0.035000	0.611940	
mm_29536.1	chr3	116662549	116662749	-	1	NA	NA	NA	28	NM_008246	15247	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	0.140000	0.756219	
mm_45620.1	chr5	75940692	75940892	-	1	NA	NA	NA	37636	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.005000	0.308458	
mm_16290.1	chr2	174111049	174111249	+	1	NA	NA	NA	798	NM_213733	228961	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	0.035000	0.601990	
mm_124013.1	chr14	76152556	76152756	-	1	NA	NA	NA	41765	NM_013745	27275	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.045000	0.527363	
mm_70082.1	chr7	142653880	142654080	-	1	NA	NA	NA	1016	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.065000	0.611940	
mm_114251.1	chr13	56702331	56702531	+	1	NA	NA	NA	-579	NM_008541	17129	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.025000	0.452736	-44(CAGTTTTAAAGA,-,0.00)
mm_33464.1	chr4	130795262	130795462	+	1	NA	NA	NA	2825	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.015000	0.472637	
mm_159341.1	chr3	58884920	58885120	-	1	NA	NA	NA	192	NM_153386	229320	Mm.131502	NM_153384	ENSMUSG00000043850	Clrn1	A130002D11Rik|USH3|Ush3a|clarin-1	clarin 1	protein-coding	0.030000	0.512438	
mm_24232.1	chr3	88950553	88950753	+	1	NA	NA	NA	-371	NM_001164533	65111	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0.140000	0.791045	
mm_103444.1	chr11	76069586	76069786	-	1	NA	NA	NA	-41904	NM_029658	76566	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	0.010000	0.432836	
mm_48975.1	chr6	4754161	4754361	+	1	NA	NA	NA	6955	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.045000	0.641791	
mm_162559.1	chr1	172206582	172206782	-	1	NA	NA	NA	122	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.085000	0.711443	
mm_115531.1	chr13	6109003	6109203	-	1	NA	NA	NA	247614	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.020000	0.497512	88(CCCTTTAGAGAA,+,0.00)
mm_30662.1	chr4	9844259	9844459	+	1	NA	NA	NA	-13	NM_013526	242316	Mm.302555	NM_013526	ENSMUSG00000051279	Gdf6	BMP-13|BMP13|GDF16	growth differentiation factor 6	protein-coding	0.120000	0.741294	
mm_86345.1	chr9	123529491	123529691	-	1	NA	NA	NA	-291	NM_030692	83493	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.070000	0.562189	
mm_43705.1	chr5	139352515	139352715	+	1	NA	NA	NA	-2	NM_001160265	545817	Mm.482474	NM_001160265	ENSMUSG00000029541	Cyp2w1	Gm455	cytochrome P450, family 2, subfamily w, polypeptide 1	protein-coding	0.015000	0.631841	
mm_100132.1	chr11	115974646	115974846	+	1	NA	NA	NA	21	NM_133663	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.095000	0.676617	
mm_165729.1	chr3	105959105	105959305	-	1	NA	NA	NA	-293	NM_027432	70465	Mm.5110	NM_027432	ENSMUSG00000000561	Wdr77	2610003I18Rik|2610312E17Rik|C79984|p44/MEP50	WD repeat domain 77	protein-coding	0.080000	0.626866	
mm_33316.1	chr4	129077368	129077568	+	1	NA	NA	NA	19197	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.010000	0.437811	
mm_10124.1	chr2	3749245	3749445	+	1	NA	NA	NA	35887	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.030000	0.557214	
mm_82063.1	chr9	122747133	122747333	+	1	NA	NA	NA	-113	NM_001199736	671232	Mm.296421	NM_001199736	ENSMUSG00000094985	Topaz1	Gm9524	testis and ovary specific PAZ domain containing 1	protein-coding	0.060000	0.696517	
mm_126332.1	chr15	79894901	79895101	+	1	NA	NA	NA	-22	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.010000	0.472637	-2(GCTTTTATATCT,+,0.00)
mm_91184.1	chr10	21065692	21065892	-	1	NA	NA	NA	24972	NM_001177776	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.015000	0.562189	
mm_49898.1	chr6	38923069	38923269	+	1	NA	NA	NA	4183	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.005000	0.417910	
mm_30974.1	chr4	34550808	34551008	+	1	NA	NA	NA	293	NM_001007589	433693	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.165000	0.820896	
mm_65673.1	chr7	28301682	28301882	-	1	NA	NA	NA	3	NM_007866	13389	Mm.12896	NM_007866	ENSMUSG00000003436	Dll3	pu|pudgy	delta-like 3 (Drosophila)	protein-coding	0.040000	0.577114	
mm_159514.1	chr4	60070376	60070576	-	1	NA	NA	NA	-1	NM_001134675	100041658	Mm.457982	NM_001134675	ENSMUSG00000073842	Mup7	Gm12546|Mup3|OTTMUSG00000007428	major urinary protein 7	protein-coding	0.010000	0.393035	76(GAGTATATAAGG,-,0.00)
mm_87196.1	chr10	39531999	39532199	+	1	NA	NA	NA	-80835	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.035000	0.512438	
mm_32410.1	chr4	107002511	107002711	+	1	NA	NA	NA	64255	NM_025500	56280	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0.015000	0.482587	-29(CCTTTAATAACT,+,0.00),-17(CCTTTTAAACTC,+,0.00)
mm_150123.1	chr19	29959417	29959617	+	1	NA	NA	NA	13727	NM_001164724	77125	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	0.005000	0.497512	
mm_153695.1	chr19	44397251	44397451	-	1	NA	NA	NA	10358	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.437811	
mm_30257.1	chr3	146651216	146651416	-	1	NA	NA	NA	1	NM_029144	75015	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.010000	0.467662	
mm_93342.1	chr10	99759544	99759744	-	1	NA	NA	NA	14	NM_027945	71832	Mm.483162	NM_027945	ENSMUSG00000046934	Csl	1700007H16Rik	citrate synthase like	protein-coding	0.035000	0.477612	
mm_73712.1	chr8	111689068	111689268	+	1	NA	NA	NA	506	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.040000	0.547264	
mm_165872.1	chr4	40703044	40703244	-	1	NA	NA	NA	50	NM_001025444	66408	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0.075000	0.587065	
mm_25222.1	chr3	103853149	103853349	+	1	NA	NA	NA	-6546	NR_104070	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.000000	0.388060	
mm_148916.1	chr19	6975048	6975248	+	1	NA	NA	NA	100	NM_008889	18938	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.175000	0.850746	
mm_74328.1	chr8	126908959	126909159	+	1	NA	NA	NA	36862	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.010000	0.482587	
mm_130681.1	chr15	100678076	100678276	-	1	NA	NA	NA	-8676	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.010000	0.462687	
mm_41496.1	chr5	92323700	92323900	+	1	NA	NA	NA	4279	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.015000	0.393035	-93(ATGTATTAAAGG,-,0.00)
mm_19163.1	chr2	83941107	83941307	-	1	NA	NA	NA	19	NM_027964	71861	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.060000	0.592040	
mm_9078.1	chr1	168431478	168431678	-	1	NA	NA	NA	591	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.045000	0.497512	
mm_53631.1	chr6	140530862	140531062	+	1	NA	NA	NA	-91701	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.000000	0.462687	
mm_145971.1	chr18	67933411	67933611	+	1	NA	NA	NA	254	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.110000	0.751244	
mm_86941.1	chr10	24595527	24595727	+	1	NA	NA	NA	185	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.085000	0.686567	
mm_98376.1	chr11	94044227	94044427	+	1	NA	NA	NA	122	NM_001025429	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.020000	0.522388	
mm_98906.1	chr11	98026854	98027054	+	1	NA	NA	NA	30	NM_009078	19921	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0.085000	0.616915	
mm_123550.1	chr14	66834176	66834376	-	1	NA	NA	NA	34324	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.030000	0.557214	
mm_27873.1	chr3	79165934	79166134	-	1	NA	NA	NA	-20159	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.283582	10(CACTTTTAAAGC,-,0.00),11(ACTTTTAAAGCA,+,0.00)
mm_52116.1	chr6	97915324	97915524	+	1	NA	NA	NA	-14393	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.422886	2(TCTTTAATAGGG,+,0.00)
mm_13718.1	chr2	117181658	117181858	+	1	NA	NA	NA	-3369	NR_030440	732489		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.005000	0.393035	-7(GGGCTTTAAAAG,-,0.00),-6(GGCTTTAAAAGG,-,0.00),-5(GCTTTAAAAGGT,+,0.00)
mm_32963.1	chr4	119814448	119814648	+	1	NA	NA	NA	-130	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.040000	0.497512	
mm_11952.1	chr2	52967594	52967794	+	1	NA	NA	NA	109826	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.015000	0.497512	
mm_129182.1	chr15	76306600	76306800	-	1	NA	NA	NA	545	NM_153122	75475	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0.020000	0.572139	
mm_168124.1	chr10	22144272	22144472	-	1	NA	NA	NA	4898	NM_001254744	319887	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	0.060000	0.542289	
mm_150568.1	chr19	40089611	40089811	+	1	NA	NA	NA	32	NM_001167875	107141	Mm.474575	NM_134144	ENSMUSG00000054827	Cyp2c50	AI266900	cytochrome P450, family 2, subfamily c, polypeptide 50	protein-coding	0.000000	0.497512	
mm_97627.1	chr11	78958728	78958928	+	1	NA	NA	NA	26096	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.000000	0.482587	
mm_81687.1	chr9	111119335	111119535	+	1	NA	NA	NA	1324	NM_001164838	71268	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.040000	0.412935	-3(CCTTTTCTGCCC,+,0.00),34(TTTTTTATAGCG,+,0.00)
mm_39643.1	chr5	24587051	24587251	+	1	NA	NA	NA	401	NM_133913	100910	Mm.140672	NM_133913	ENSMUSG00000038181	Chpf2	2010209O12Rik|AW060945|mKIAA1402|mir-671	chondroitin polymerizing factor 2	protein-coding	0.030000	0.537313	
mm_106009.1	chr11	115813507	115813707	-	1	NA	NA	NA	-15	NM_080643	140721	Mm.383737	NM_080643	ENSMUSG00000034471	Caskin2	1600028L06Rik|mKIAA1139	CASK-interacting protein 2	protein-coding	0.085000	0.716418	
mm_5102.1	chr1	5070185	5070385	-	1	NA	NA	NA	0	NM_001177795	58175	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0.005000	0.457711	
mm_120850.1	chr14	75216305	75216505	+	1	NA	NA	NA	-25882	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.020000	0.487562	
mm_111499.1	chr12	99392855	99393055	-	1	NA	NA	NA	57119	NM_183186	71375	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.200000	0.830846	
mm_111491.1	chr12	99011557	99011757	-	1	NA	NA	NA	91045	NM_198311	76260	Mm.282660	NM_029553	ENSMUSG00000021013	Ttc8	0610012F22Rik|AV001447|BBS8	tetratricopeptide repeat domain 8	protein-coding	0.025000	0.512438	
mm_1982.1	chr1	86789163	86789363	+	1	NA	NA	NA	85459	NM_001172157	208718	Mm.389152	NM_153530	ENSMUSG00000053333	Dis3l2	4930429A22Rik|8030493P09Rik	DIS3 like 3'-5' exoribonuclease 2	protein-coding	0.010000	0.253731	
mm_28728.1	chr3	95735218	95735418	-	1	NA	NA	NA	-345	NR_105981	102466787		NR_105981	ENSMUSG00000098737	Mir7014	Gm27837|mmu-mir-7014	microRNA 7014	ncRNA	0.035000	0.601990	-63(GGCTATAAAGAC,-,0.00)
mm_127989.1	chr15	12549804	12550004	-	1	NA	NA	NA	42652	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.020000	0.517413	
mm_47145.1	chr5	120560288	120560488	-	1	NA	NA	NA	28225	NM_145853	252972	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.025000	0.557214	
mm_70636.1	chr8	13896185	13896385	+	1	NA	NA	NA	-6014	NM_025556	66423	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	0.025000	0.532338	
mm_113665.1	chr13	42682011	42682211	+	1	NA	NA	NA	1312	NM_001302635	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.025000	0.477612	
mm_122396.1	chr14	40994119	40994319	-	1	NA	NA	NA	12701	NM_001316739	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.010000	0.333333	
mm_58114.1	chr6	138424502	138424702	-	1	NA	NA	NA	1497	NR_126072	319702	Mm.403785	NR_126072	ENSMUSG00000089957	A830011K09Rik	-	RIKEN cDNA A830011K09 gene	ncRNA	0.025000	0.467662	8(GCTTATAGACTG,+,0.00)
mm_96119.1	chr11	60728334	60728534	+	1	NA	NA	NA	36	NM_001009927	237781	Mm.339760	NM_001009927	ENSMUSG00000018599	Mief2	AI482195|Gm11|Smcr7	mitochondrial elongation factor 2	protein-coding	0.095000	0.636816	
mm_129745.1	chr15	82244602	82244802	-	1	NA	NA	NA	45	NM_178269	66570	Mm.23596	NM_025639	ENSMUSG00000068101	Cenpm	2610019I03Rik|AI853711|Pane1	centromere protein M	protein-coding	0.105000	0.666667	
mm_133001.1	chr16	55966255	55966455	+	1	NA	NA	NA	80	NM_024218	68193	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0.050000	0.537313	5(TGCCCTATAAGG,-,0.00)
mm_153883.1	chr19	46943847	46944047	-	1	NA	NA	NA	18404	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.000000	0.378109	
mm_78763.1	chr9	43307571	43307771	+	1	NA	NA	NA	-3092	NM_023655	72169	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	0.000000	0.417910	
mm_90370.1	chr10	127170847	127171047	+	1	NA	NA	NA	5116	NM_001244618	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.080000	0.666667	
mm_106719.1	chr12	3856240	3856440	+	1	NA	NA	NA	5904	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.015000	0.611940	
mm_123576.1	chr14	67000374	67000574	-	1	NA	NA	NA	8403	NM_009761	12177	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0.020000	0.432836	
mm_154120.1	chr19	57197297	57197497	-	1	NA	NA	NA	234	NM_001103177	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.100000	0.676617	
mm_97185.1	chr11	75567886	75568086	+	1	NA	NA	NA	16557	NR_039553	100628624		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0.020000	0.552239	
mm_90613.1	chr10	128362024	128362224	+	1	NA	NA	NA	7913	NM_001081040	210582	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.015000	0.477612	
mm_119798.1	chr14	54207721	54207921	+	1	NA	NA	NA	46108	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.467662	
mm_124880.1	chr15	10223955	10224155	+	1	NA	NA	NA	149	NM_001253781	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.005000	0.517413	
mm_46527.1	chr5	105415624	105415824	-	1	NA	NA	NA	-51	NM_001033550	433926	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0.200000	0.805970	
mm_193.1	chr1	15804271	15804471	+	1	NA	NA	NA	-1275	NM_009352	21749	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	0.010000	0.507463	
mm_104150.1	chr11	87086638	87086838	-	1	NA	NA	NA	39	NM_024262	74133	Mm.23257	NM_024262	ENSMUSG00000020495	Smg8	1200011M11Rik	smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.090000	0.676617	
mm_163510.1	chr12	113258664	113258864	-	1	NA	NA	NA	72861	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.020000	0.517413	
mm_120791.1	chr14	74733364	74733564	+	1	NA	NA	NA	1167	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.005000	0.467662	
mm_34253.1	chr4	141301139	141301339	+	1	NA	NA	NA	18	NM_010139	13836	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	0.075000	0.616915	-87(GCCCCTTTAAAG,-,0.00),-86(CCCCTTTAAAGA,-,0.00),-85(CCCTTTAAAGAC,+,0.00),-85(CCCTTTAAAGAC,-,0.00)
mm_24768.1	chr3	95502437	95502637	+	1	NA	NA	NA	3327	NM_007802	13038	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.005000	0.537313	
mm_15428.1	chr2	157101010	157101210	+	1	NA	NA	NA	14055	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.000000	0.373134	
mm_130983.1	chr15	103344720	103344920	-	1	NA	NA	NA	-4734	NM_013866	29813	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.010000	0.537313	
mm_154534.1	chrM	13741	13941	-	1	NA	NA	NA	NA	NA									0.010000	0.328358	
mm_119386.1	chr14	41136540	41136740	+	1	NA	NA	NA	4852	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.000000	0.323383	
mm_168746.1	chr12	115461381	115461581	-	1	NA	NA	NA	234313	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.005000	0.427861	
mm_4631.1	chr1	179668135	179668335	+	1	NA	NA	NA	4	NM_178653	109232	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	0.150000	0.796020	
mm_101724.1	chr11	42182417	42182617	-	1	NA	NA	NA	413	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding	0.035000	0.472637	
mm_148767.1	chr19	6079936	6080136	+	1	NA	NA	NA	-2	NM_001111317	433215	Mm.437186	NM_001111317	ENSMUSG00000047733	Tmem262	-	transmembrane protein 262	protein-coding	0.010000	0.507463	
mm_149113.1	chr19	8966941	8967141	+	1	NA	NA	NA	0	NM_026007	67160	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	0.105000	0.631841	43(CCTTTTATGCCG,+,0.00)
mm_145996.1	chr18	68344358	68344558	+	1	NA	NA	NA	6855	NM_013596	17203	Mm.8003	NM_013596	ENSMUSG00000007480	Mc5r	-	melanocortin 5 receptor	protein-coding	0.020000	0.452736	
mm_68358.1	chr7	106511442	106511642	-	1	NA	NA	NA	-70469	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.472637	
mm_135012.1	chr16	32486072	32486272	-	1	NA	NA	NA	1707	NM_145932	106407	Mm.476915	NM_145932	ENSMUSG00000035699	Slc51a	AV001382|AW261577|D630035O19Rik|OSTalpha|Osta	solute carrier family 51, alpha subunit	protein-coding	0.020000	0.606965	
mm_8086.1	chr1	135633946	135634146	-	1	NA	NA	NA	-48691	NM_173437	215690	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.000000	0.502488	
mm_10040.1	chr1	192855801	192856001	-	1	NA	NA	NA	-149	NM_198247	214791	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	0.085000	0.542289	
mm_101750.1	chr11	43380089	43380289	-	1	NA	NA	NA	-5728	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.015000	0.582090	
mm_3931.1	chr1	163358285	163358485	+	1	NA	NA	NA	-44735	NM_175686	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.025000	0.517413	
mm_115251.1	chr13	110396897	110397097	+	1	NA	NA	NA	1953	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.000000	0.437811	
mm_44501.1	chr5	23783605	23783805	-	1	NA	NA	NA	6	NM_001289780	78697	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	0.135000	0.726368	
mm_18301.1	chr2	53145263	53145463	-	1	NA	NA	NA	45824	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.020000	0.343284	-6(TACTAGAAAAGG,-,0.00),69(CCTTTAAGAGTA,+,0.00)
mm_9602.1	chr1	175615748	175615948	-	1	NA	NA	NA	9787	NM_010209	14194	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	0.015000	0.393035	
mm_133190.1	chr16	72663701	72663901	+	1	NA	NA	NA	652	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.060000	0.597015	
mm_167881.1	chrX	45940803	45941003	-	1	NA	NA	NA	388008	NR_045440	75133	Mm.417818	NR_045440	ENSMUSG00000085157	4930515L19Rik	-	RIKEN cDNA 4930515L19 gene	ncRNA	0.005000	0.318408	
mm_71014.1	chr8	31187280	31187480	+	1	NA	NA	NA	49	NM_001286425	171167	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	0.055000	0.582090	
mm_36938.1	chr4	108579225	108579425	-	1	NA	NA	NA	11	NM_172697	230596	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	0.095000	0.592040	
mm_82483.1	chr9	18385867	18386067	-	1	NA	NA	NA	-39	NM_028279	72560	Mm.474510	NM_028279	ENSMUSG00000043943	Naalad2	2700022G20Rik|D9Ertd285e|Folh1b|GCP3|GCPIII|NAADALASE2|NAALADASE2	N-acetylated alpha-linked acidic dipeptidase 2	protein-coding	0.010000	0.562189	
mm_75046.1	chr8	32820147	32820347	-	1	NA	NA	NA	129779	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding	0.000000	0.412935	-55(TCTTTTAAGGAG,+,0.00)
mm_34288.1	chr4	141546715	141546915	+	1	NA	NA	NA	653	NR_030695	320456	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.150000	0.805970	
mm_117666.1	chr13	93499714	93499914	-	1	NA	NA	NA	-6	NM_021310	57748	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	0.185000	0.781095	
mm_71230.1	chr8	40905719	40905919	+	1	NA	NA	NA	-20414	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.010000	0.512438	
mm_61279.1	chr7	66743621	66743821	+	1	NA	NA	NA	217	NM_001164201	545975	Mm.380104	NM_001164201	ENSMUSG00000030510	Cers3	4930550L11Rik|Gm488|Lass3|T3L	ceramide synthase 3	protein-coding	0.020000	0.517413	
mm_28441.1	chr3	90506276	90506476	-	1	NA	NA	NA	3122	NM_001293776	66511	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	0.010000	0.417910	
mm_21368.1	chr2	157135108	157135308	-	1	NA	NA	NA	14	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.110000	0.681592	
mm_163350.1	chr12	18229782	18229982	+	1	NA	NA	NA	-284628	NM_001033157	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.005000	0.417910	
mm_15281.1	chr2	155276387	155276587	+	1	NA	NA	NA	123	NR_046364	66734	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0.130000	0.736318	-71(TCCCCTTTAAGG,-,0.00),-69(CCCTTTAAGGAA,+,0.00)
mm_2348.1	chr1	92910553	92910753	+	1	NA	NA	NA	36	NR_138577	75995	Mm.46179	NR_138577	ENSMUSG00000097251	5033417F24Rik	6330419D11Rik	RIKEN cDNA 5033417F24 gene	ncRNA	0.115000	0.701493	
mm_117841.1	chr13	98692630	98692830	-	1	NA	NA	NA	2101	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.010000	0.477612	
mm_47658.1	chr5	125393217	125393417	-	1	NA	NA	NA	-3300	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.035000	0.621891	
mm_28808.1	chr3	96256150	96256350	-	1	NA	NA	NA	7067	NM_033596	97122	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0.015000	0.457711	
mm_171366.1	chr4	118943324	118943524	-	1	NA	NA	NA	-8584	NM_146399	258394	Mm.434316	NM_146399	ENSMUSG00000111259	Olfr1328	MOR259-1|MOR259-13|Olfr1519	olfactory receptor 1328	protein-coding	0.040000	0.542289	
mm_38616.1	chr4	141952027	141952227	-	1	NA	NA	NA	-30865	NR_040672	545691	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037|OTTMUSG00000010113	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.040000	0.597015	
mm_146841.1	chr18	23041460	23041660	-	1	NA	NA	NA	93	NM_199024	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding	0.105000	0.711443	
mm_167375.1	chr8	91759050	91759250	+	1	NA	NA	NA	42504	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.025000	0.457711	
mm_86573.1	chr10	12845913	12846113	+	1	NA	NA	NA	15722	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.020000	0.393035	
mm_108931.1	chr12	101083679	101083879	+	1	NA	NA	NA	-77	NM_001160214	68734	Mm.87077	NM_211355	ENSMUSG00000041846	Smek1	1110034C04Rik|BC064465|Ppp4r3a|mKIAA2010	SMEK homolog 1, suppressor of mek1 (Dictyostelium)	protein-coding	0.100000	0.646766	
mm_106440.1	chr11	119758352	119758552	-	1	NA	NA	NA	75913	NR_045313	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	0.020000	0.432836	
mm_7980.1	chr1	134099055	134099255	-	1	NA	NA	NA	-12087	NM_001284524	71884	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.020000	0.552239	
mm_40962.1	chr5	76965841	76966041	+	1	NA	NA	NA	-8760	NM_025691	66661	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	0.000000	0.343284	
mm_149287.1	chr19	10634219	10634419	+	1	NA	NA	NA	86	NM_027913	71768	Mm.169261	NM_027913	ENSMUSG00000043789	Vwce	1300015B04Rik	von Willebrand factor C and EGF domains	protein-coding	0.055000	0.666667	
mm_172550.1	chr8	102666655	102666855	-	1	NA	NA	NA	118356	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.000000	0.398010	
mm_98217.1	chr11	87986536	87986736	+	1	NA	NA	NA	-51	NM_001168472	68097	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	0.030000	0.587065	
mm_148625.1	chr19	5447602	5447802	+	1	NA	NA	NA	4	NM_010235	14283	Mm.6215	NM_010235	ENSMUSG00000024912	Fosl1	AW538199|Fra1|fra-1	fos-like antigen 1	protein-coding	0.085000	0.646766	
mm_36188.1	chr4	62228451	62228651	-	1	NA	NA	NA	-20005	NM_001290350	22696	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0.030000	0.502488	
mm_165812.1	chr3	145758691	145758891	+	1	NA	NA	NA	99	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.130000	0.746269	
mm_160551.1	chr9	46123187	46123387	+	1	NA	NA	NA	-105343	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.015000	0.482587	
mm_11588.1	chr2	33215929	33216129	+	1	NA	NA	NA	68	NM_011923	26360	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0.025000	0.626866	-43(GCTTTTCTGGGG,+,0.00)
mm_160662.1	chr9	119718975	119719175	-	1	NA	NA	NA	-43	NM_001205321	20264	Mm.247042	NM_009134	ENSMUSG00000034533	Scn10a	Nav1.8|PN3|SNS	sodium channel, voltage-gated, type X, alpha	protein-coding	0.050000	0.572139	
mm_130567.1	chr15	99435551	99435751	-	1	NA	NA	NA	22097	NM_001001884	380969	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	0.020000	0.353234	-44(TTTTTTAAAGCC,+,0.00)
mm_53053.1	chr6	124808816	124809016	+	1	NA	NA	NA	-2	NM_013539	14794	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.075000	0.666667	
mm_56821.1	chr6	116735266	116735466	-	1	NA	NA	NA	-18608	NM_178768	319776	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.000000	0.393035	
mm_62673.1	chr7	109439061	109439261	+	1	NA	NA	NA	-108	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	0.125000	0.676617	
mm_14070.1	chr2	122745964	122746164	+	1	NA	NA	NA	7559	NM_019788	18457	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	0.020000	0.487562	
mm_113951.1	chr13	51100383	51100583	+	1	NA	NA	NA	244	NR_029463	77428	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0.055000	0.592040	-79(ATTTTTAAAGGG,+,0.00)
mm_120600.1	chr14	70079153	70079353	+	1	NA	NA	NA	1458	NM_001289927	13655	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.055000	0.587065	
mm_133115.1	chr16	65562716	65562916	+	1	NA	NA	NA	-119	NM_026879	68942	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0.095000	0.626866	
mm_155160.1	chrX	52987999	52988199	+	1	NA	NA	NA	21	NM_013556	15452	Mm.299381	NM_013556	ENSMUSG00000025630	Hprt	C81579|HPGRT|Hprt1	hypoxanthine guanine phosphoribosyl transferase	protein-coding	0.120000	0.721393	
mm_46795.1	chr5	112790623	112790823	-	1	NA	NA	NA	-2569	NR_040675	67360	Mm.59218	NR_040675	ENSMUSG00000098230	1700095B10Rik	-	RIKEN cDNA 1700095B10 gene	ncRNA	0.000000	0.527363	
mm_35101.1	chr4	8980169	8980369	-	1	NA	NA	NA	-289048	NM_028940	74438	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.005000	0.398010	
mm_101571.1	chr11	34227456	34227656	-	1	NA	NA	NA	-19467	NM_023907	14233	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	0.015000	0.517413	
mm_60103.1	chr7	35353434	35353634	+	1	NA	NA	NA	19297	NM_027897	52428	Mm.286600	NM_027897	ENSMUSG00000030494	Rhpn2	1300002E07Rik|AA536890|C85860|D7Ertd784e	rhophilin, Rho GTPase binding protein 2	protein-coding	0.020000	0.532338	
mm_81855.1	chr9	118703341	118703541	+	1	NA	NA	NA	-8251	NM_001113514	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.015000	0.532338	
mm_59312.1	chr7	25282690	25282890	+	1	NA	NA	NA	611	NM_027882	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.115000	0.761194	
mm_168698.1	chr11	97778262	97778462	-	1	NA	NA	NA	-2444	NM_028156	72215	Mm.269049	NM_028156	ENSMUSG00000018543	1700001P01Rik	-	RIKEN cDNA 1700001P01 gene	protein-coding	0.020000	0.388060	
mm_7207.1	chr1	93076103	93076303	-	1	NA	NA	NA	6277	NM_001294150	16560	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.015000	0.577114	
mm_171200.1	chr3	51415879	51416079	+	1	NA	NA	NA	-37	NM_053089	74838	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0.115000	0.711443	
mm_25093.1	chr3	100922391	100922591	+	1	NA	NA	NA	-2	NM_001165952	229644	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	0.060000	0.651741	
mm_73577.1	chr8	109778756	109778956	+	1	NA	NA	NA	273	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0.125000	0.726368	
mm_170063.1	chr17	30626862	30627062	+	1	NA	NA	NA	26	NM_013811	13417	Mm.426017	NM_013811	ENSMUSG00000033826	Dnah8	ATPase|Dnahc8|Hst6.7b|P1-Loop	dynein, axonemal, heavy chain 8	protein-coding	0.055000	0.616915	
mm_67134.1	chr7	72279607	72279807	-	1	NA	NA	NA	26888	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.005000	0.422886	
mm_114454.1	chr13	67125007	67125207	+	1	NA	NA	NA	-3121	NM_172392	268670	Mm.56274	NM_172392	ENSMUSG00000057396	Zfp759	BC028265|Rslcan-8|Rslcan8	zinc finger protein 759	protein-coding	0.015000	0.417910	
mm_19772.1	chr2	105787449	105787649	-	1	NA	NA	NA	105086	NM_001310145	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.005000	0.333333	
mm_56166.1	chr6	87994042	87994242	-	1	NA	NA	NA	12459	NR_026990	434064	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	0.025000	0.601990	
mm_87052.1	chr10	28824209	28824409	+	1	NA	NA	NA	99198	NR_033601	114676	Mm.390292	NR_033601		4930519F09Rik	-	pyruvate dehydrogenase E1 alpha 1 pseudogene	pseudo	0.000000	0.368159	-77(CTTTAAATAGGT,+,0.00)
mm_8748.1	chr1	160307237	160307437	-	1	NA	NA	NA	-11365	NR_035448	100316784		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	0.015000	0.537313	
mm_163889.1	chr14	26442662	26442862	-	1	NA	NA	NA	85215	NR_038005	71106	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.010000	0.447761	
mm_87365.1	chr10	43927866	43928066	+	1	NA	NA	NA	26159	NM_130892	170728	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	0.010000	0.477612	
mm_168276.1	chr1	10294643	10294843	-	1	NA	NA	NA	-62073	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.040000	0.517413	-34(GTGTATATAAGC,-,0.00)
mm_142645.1	chr17	47465735	47465935	-	1	NA	NA	NA	-28460	NM_029296	75462	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.010000	0.676617	
mm_168405.1	chr11	30149867	30150067	-	1	NA	NA	NA	48290	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.005000	0.402985	
mm_51386.1	chr6	77242622	77242822	+	1	NA	NA	NA	5	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.095000	0.651741	
mm_60621.1	chr7	44602538	44602738	+	1	NA	NA	NA	11752	NM_001290682	16504	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.030000	0.626866	
mm_8242.1	chr1	138536103	138536303	-	1	NA	NA	NA	83554	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.010000	0.407960	
mm_49600.1	chr6	30723447	30723647	+	1	NA	NA	NA	-9959	NM_001252293	17294	Mm.335639	NM_008590	ENSMUSG00000051855	Mest	AA408879|AI256745|Peg1	mesoderm specific transcript	protein-coding	0.015000	0.587065	
mm_161880.1	chr18	37489371	37489571	+	1	NA	NA	NA	6	NM_053143	93889	Mm.196852	NM_053143	ENSMUSG00000048347	Pcdhb18	Pcdhb9|PcdhbR	protocadherin beta 18	protein-coding	0.015000	0.422886	
mm_77001.1	chr8	107388990	107389190	-	1	NA	NA	NA	14115	NM_008706	18104	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	0.035000	0.522388	
mm_125780.1	chr15	74715923	74716123	+	1	NA	NA	NA	1184	NM_028216	72373	Mm.46395	NM_028216	ENSMUSG00000022598	Psca	2210408B04Rik	prostate stem cell antigen	protein-coding	0.015000	0.557214	
mm_119220.1	chr14	33216942	33217142	+	1	NA	NA	NA	219	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.020000	0.512438	
mm_15423.1	chr2	156872406	156872606	+	1	NA	NA	NA	9384	NM_026124	67388	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	0.005000	0.398010	
mm_151528.1	chr19	58744004	58744204	+	1	NA	NA	NA	15217	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.020000	0.497512	
mm_47325.1	chr5	122480311	122480511	-	1	NA	NA	NA	21814	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.005000	0.368159	
mm_145047.1	chr18	39791823	39792023	+	1	NA	NA	NA	18426	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.015000	0.412935	39(GCTTTTATGAGC,+,0.00)
mm_70854.1	chr8	23776496	23776696	+	1	NA	NA	NA	106935	NM_177086	320158	Mm.121274	NM_177086	ENSMUSG00000037492	Zmat4	9630048M01Rik	zinc finger, matrin type 4	protein-coding	0.015000	0.507463	
mm_28435.1	chr3	90466244	90466444	-	1	NA	NA	NA	-478	NM_008727	18160	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.030000	0.522388	
mm_144227.1	chr18	10181209	10181409	+	1	NA	NA	NA	483	NM_009071	19877	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.055000	0.512438	
mm_106236.1	chr11	117774660	117774860	-	1	NA	NA	NA	5861	NM_181321	217353	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.015000	0.487562	
mm_145975.1	chr18	67934023	67934223	+	1	NA	NA	NA	866	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.065000	0.616915	
mm_26234.1	chr3	141211795	141211995	+	1	NA	NA	NA	460	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding	0.035000	0.527363	
mm_132887.1	chr16	48842456	48842656	+	1	NA	NA	NA	4	NM_020509	57262	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0.010000	0.462687	20(GCGTATAAAAGC,-,0.00)
mm_35924.1	chr4	53032089	53032289	-	1	NA	NA	NA	20309	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.015000	0.343284	
mm_153545.1	chr19	42075379	42075579	-	1	NA	NA	NA	10891	NM_198108	226123	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	0.020000	0.482587	33(CCCTTTATAGAA,+,0.00)
mm_153758.1	chr19	45441734	45441934	-	1	NA	NA	NA	78100	NM_001037758	12234	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.015000	0.427861	
mm_169643.1	chr1	55088269	55088469	+	1	NA	NA	NA	221	NM_008303	15528	Mm.215667	NM_008303	ENSMUSG00000073676	Hspe1	10kDa|Hsp10|mt-cpn10	heat shock protein 1 (chaperonin 10)	protein-coding	0.110000	0.706468	
mm_128826.1	chr15	67146375	67146575	-	1	NA	NA	NA	30407	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.020000	0.427861	
mm_96527.1	chr11	68502973	68503173	+	1	NA	NA	NA	54	NR_126154	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.005000	0.512438	
mm_153065.1	chr19	32210039	32210239	-	1	NA	NA	NA	874	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.005000	0.388060	
mm_110052.1	chr12	20815452	20815652	-	1	NA	NA	NA	227	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.140000	0.741294	
mm_165900.1	chr4	46752493	46752693	+	1	NA	NA	NA	-102394	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	0.015000	0.552239	
mm_19473.1	chr2	92460387	92460587	-	1	NA	NA	NA	31	NM_145832	228368	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.075000	0.671642	
mm_130864.1	chr15	102203322	102203522	-	1	NA	NA	NA	-223	NM_001289694	68744	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0.095000	0.656716	
mm_64087.1	chr7	140967283	140967483	+	1	NA	NA	NA	-46	NM_026820	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding	0.005000	0.507463	-56(CCACATAAAAGG,-,0.00)
mm_91038.1	chr10	18235501	18235701	-	1	NA	NA	NA	-620	NM_144820	215814	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	0.055000	0.487562	
mm_106284.1	chr11	118202450	118202650	-	1	NA	NA	NA	10192	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.035000	0.626866	
mm_30212.1	chr3	144932430	144932630	-	1	NA	NA	NA	-1	NM_001033199	99709	Mm.440040	NM_001033199	ENSMUSG00000074195	Clca4b	AI747448|Clca7	chloride channel accessory 4B	protein-coding	0.000000	0.467662	
mm_109121.1	chr12	105705879	105706079	+	1	NA	NA	NA	-3	NM_030187	78801	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	0.060000	0.666667	
mm_83291.1	chr9	43171330	43171530	-	1	NA	NA	NA	34325	NM_011139	18988	Mm.436650	NM_011139	ENSMUSG00000032015	Pou2f3	Epoc-1|Oct-11a|Oct11|Otf-11|Otf11|Skin|Skin-1a|Skn-1a|Skn-li	POU domain, class 2, transcription factor 3	protein-coding	0.000000	0.398010	
mm_145855.1	chr18	65454079	65454279	+	1	NA	NA	NA	23182	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.447761	
mm_67948.1	chr7	100467160	100467360	-	1	NA	NA	NA	-5731	NM_009464	22229	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.020000	0.497512	-34(GACTTTAAAGGG,-,0.00),-33(ACTTTAAAGGGG,+,0.00)
mm_89499.1	chr10	94035360	94035560	+	1	NA	NA	NA	282	NM_001304720	215008	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	0.070000	0.666667	
mm_56808.1	chr6	116659419	116659619	-	1	NA	NA	NA	8835	NM_001166580	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.010000	0.482587	
mm_120337.1	chr14	63451387	63451587	+	1	NA	NA	NA	15093	NM_177628	219148	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.005000	0.557214	
mm_120757.1	chr14	73364462	73364662	+	1	NA	NA	NA	20709	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.045000	0.502488	
mm_6619.1	chr1	75506545	75506745	-	1	NA	NA	NA	-193	NM_001310679	98733	Mm.236454	NM_178884	ENSMUSG00000026211	Obsl1	AW822216	obscurin-like 1	protein-coding	0.025000	0.597015	
mm_156408.1	chrX	140461021	140461221	+	1	NA	NA	NA	4518	NM_021463	19139	Mm.287178	NM_021463	ENSMUSG00000031432	Prps1	2310010D17Rik|C76571|C76678|PRS-I|Prps-1	phosphoribosyl pyrophosphate synthetase 1	protein-coding	0.000000	0.343284	
mm_47539.1	chr5	124249706	124249906	-	1	NA	NA	NA	-46	NM_011256	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.190000	0.835821	
mm_152002.1	chr19	5912697	5912897	-	1	NA	NA	NA	74	NM_011262	19708	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	0.060000	0.567164	
mm_5052.1	chr1	194938876	194939076	+	1	NA	NA	NA	155	NM_001111059	12490	Mm.29798	NM_133654	ENSMUSG00000016494	Cd34	AU040960	CD34 antigen	protein-coding	0.090000	0.676617	
mm_166481.1	chr5	145214436	145214636	+	1	NA	NA	NA	9977	NM_001167944	22757	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	0.020000	0.552239	
mm_13634.1	chr2	114036363	114036563	+	1	NA	NA	NA	16412	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.000000	0.363184	-85(TGTTATAAAAAG,-,0.00)
mm_123098.1	chr14	55878258	55878458	-	1	NA	NA	NA	5898	NM_019820	56410	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0.020000	0.452736	
mm_64553.1	chr7	144553845	144554045	+	1	NA	NA	NA	-216	NM_001195086	233977	Mm.490347	NM_001033319	ENSMUSG00000037519	Ppfia1	C030014K08Rik|C87158|LIP.1|LIP1	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	protein-coding	0.080000	0.641791	
mm_61684.1	chr7	81004873	81005073	+	1	NA	NA	NA	11289	NM_178707	233410	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	8430405N24|A730014M16Rik|Znf592|mKIAA0211	zinc finger protein 592	protein-coding	0.005000	0.502488	
mm_12821.1	chr2	80316891	80317091	+	1	NA	NA	NA	1525	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.005000	0.457711	
mm_34749.1	chr4	152297200	152297400	+	1	NA	NA	NA	86	NM_133788	57295	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|OTTMUSG00000010406|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	0.170000	0.761194	
mm_113588.1	chr13	40917542	40917742	+	1	NA	NA	NA	8	NM_133219	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.045000	0.597015	
mm_151059.1	chr19	47179297	47179497	+	1	NA	NA	NA	577	NM_021360	18011	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.085000	0.721393	
mm_117342.1	chr13	69594901	69595101	-	1	NA	NA	NA	16462	NM_175283	78925	Mm.451912	NM_175283	ENSMUSG00000021594	Srd5a1	0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1	steroid 5 alpha-reductase 1	protein-coding	0.010000	0.447761	
mm_123642.1	chr14	68655594	68655794	-	1	NA	NA	NA	148	NM_010082	13522	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	0.005000	0.497512	-72(TCCCTTAAGAGG,-,0.00),-71(CCCTTAAGAGGA,+,0.00)
mm_45411.1	chr5	66333336	66333536	-	1	NA	NA	NA	4229	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.025000	0.487562	
mm_78933.1	chr9	45103780	45103980	+	1	NA	NA	NA	-13996	NM_001014761	72821	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	0.010000	0.442786	
mm_124314.1	chr14	103218908	103219108	-	1	NA	NA	NA	-119442	NM_001347600	50789	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.015000	0.477612	
mm_40868.1	chr5	73972716	73972916	+	1	NA	NA	NA	95595	NM_177561	69727	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.000000	0.398010	
mm_25225.1	chr3	103859646	103859846	+	1	NA	NA	NA	-49	NR_104070	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.010000	0.442786	42(TCCTCTAAAAGA,-,0.00)
mm_4303.1	chr1	171840464	171840664	+	1	NA	NA	NA	867	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.402985	
mm_101114.1	chr11	11961932	11962132	-	1	NA	NA	NA	-63888	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.010000	0.497512	-37(AGCTATATAAGG,-,0.00)
mm_60821.1	chr7	45705276	45705476	+	1	NA	NA	NA	129	NM_016974	13170	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.040000	0.567164	
mm_123362.1	chr14	63143033	63143233	-	1	NA	NA	NA	20671	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.442786	
mm_127444.1	chr15	101270407	101270607	+	1	NA	NA	NA	3661	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.040000	0.611940	
mm_55658.1	chr6	72390530	72390730	-	1	NA	NA	NA	37	NM_016794	22320	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.035000	0.606965	
mm_30558.1	chr4	3779065	3779265	+	1	NA	NA	NA	56490	NM_026147	67427	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.000000	0.487562	
mm_95153.1	chr11	35769537	35769737	+	1	NA	NA	NA	142	NM_145962	211347	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0.150000	0.791045	
mm_40050.1	chr5	33983625	33983825	+	1	NA	NA	NA	292	NM_001310546	381633	Mm.4923	NM_001033458	ENSMUSG00000070858	Gm1673	-	predicted gene 1673	protein-coding	0.095000	0.706468	
mm_46508.1	chr5	105136090	105136290	-	1	NA	NA	NA	3362	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.238806	-24(AACTCTAAAAGG,-,0.00),-2(CCTTTTATAGCC,+,0.00)
mm_171581.1	chr4	147492321	147492521	+	1	NA	NA	NA	-60856	NM_001014397	433804	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154|OTTMUSG00000010673	zinc finger protein 985	protein-coding	0.030000	0.542289	
mm_88569.1	chr10	79669375	79669575	+	1	NA	NA	NA	65	NM_148934	110012	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	0.135000	0.686567	
mm_135026.1	chr16	32550053	32550253	-	1	NA	NA	NA	53872	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.005000	0.437811	
mm_2313.1	chr1	91801370	91801570	+	1	NA	NA	NA	9	NM_007855	13345	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	0.080000	0.601990	
mm_169229.1	chr13	67234001	67234201	+	1	NA	NA	NA	34967	NM_001001152	238690	Mm.306358	NM_001001152	ENSMUSG00000055480	Zfp458	BC062958|Rslcan-7|Znf728|mszf59-2	zinc finger protein 458	protein-coding	0.035000	0.497512	
mm_68679.1	chr7	118994973	118995173	-	1	NA	NA	NA	138	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.135000	0.746269	
mm_85117.1	chr9	95407256	95407456	-	1	NA	NA	NA	-86	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.120000	0.756219	
mm_82895.1	chr9	32608890	32609090	-	1	NA	NA	NA	-67538	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.025000	0.547264	
mm_110537.1	chr12	55080035	55080235	-	1	NA	NA	NA	-25	NM_028314	72658	Mm.434380	NM_028314	ENSMUSG00000062198	2700097O09Rik	AW552125	RIKEN cDNA 2700097O09 gene	protein-coding	0.110000	0.661692	
mm_137046.1	chr17	17917390	17917590	+	1	NA	NA	NA	29666	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.000000	0.358209	
mm_92257.1	chr10	70644782	70644982	-	1	NA	NA	NA	7043	NR_045291	319646	Mm.483039	NR_045291	ENSMUSG00000037747	D630013N20Rik	-	RIKEN cDNA D630013N20 gene	ncRNA	0.000000	0.353234	
mm_24064.1	chr3	87915491	87915691	+	1	NA	NA	NA	-3953	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.000000	0.422886	
mm_18047.1	chr2	39065438	39065638	-	1	NA	NA	NA	3	NR_110968	76899	Mm.131098	NM_029793	ENSMUSG00000026754	Golga1	0710001G09Rik|2210418B03Rik|AW107649|Golgi97|awag|golgin-97	golgi autoantigen, golgin subfamily a, 1	protein-coding	0.145000	0.716418	
mm_18790.1	chr2	73775157	73775357	-	1	NA	NA	NA	89	NM_001166603	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	0.220000	0.820896	
mm_125252.1	chr15	35267448	35267648	+	1	NA	NA	NA	-28564	NM_054049	107587	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0.015000	0.542289	
mm_125264.1	chr15	35431288	35431488	+	1	NA	NA	NA	59842	NM_177151	666173	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0.000000	0.243781	
mm_20118.1	chr2	121171033	121171233	-	1	NA	NA	NA	-8	NM_001290820	99334	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	0.110000	0.726368	
mm_3136.1	chr1	135131734	135131934	+	1	NA	NA	NA	741	NM_007955	13924	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP|mOST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	0.025000	0.557214	
mm_79731.1	chr9	62342001	62342201	+	1	NA	NA	NA	758	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.080000	0.577114	
mm_8231.1	chr1	138175557	138175757	-	1	NA	NA	NA	-352	NM_001268286	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.015000	0.422886	
mm_27138.1	chr3	32615194	32615394	-	1	NA	NA	NA	1241	NM_013531	14696	Mm.139192	NM_013531	ENSMUSG00000027669	Gnb4	6720453A21Rik|G(beta)4	guanine nucleotide binding protein (G protein), beta 4	protein-coding	0.005000	0.338308	
mm_34294.1	chr4	141614265	141614465	+	1	NA	NA	NA	-5	NR_033566	100165	Mm.439819	NR_033566	ENSMUSG00000073731	AI507597	-	expressed sequence AI507597	ncRNA	0.005000	0.616915	
mm_46777.1	chr5	112394758	112394958	-	1	NA	NA	NA	-2645	NM_028386	72898	Mm.151745	NM_028386	ENSMUSG00000029348	Asphd2	2900006N09Rik|9230106G13Rik	aspartate beta-hydroxylase domain containing 2	protein-coding	0.185000	0.845771	
mm_81253.1	chr9	107982914	107983114	+	1	NA	NA	NA	2902	NM_026597	68176	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0.025000	0.611940	
mm_37747.1	chr4	129618958	129619158	-	1	NA	NA	NA	35	NM_198026	230767	Mm.441132	NM_198026	ENSMUSG00000040795	Iqcc	BC026978	IQ motif containing C	protein-coding	0.085000	0.611940	
mm_18899.1	chr2	76715233	76715433	-	1	NA	NA	NA	40018	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.025000	0.502488	
mm_126416.1	chr15	80287207	80287407	+	1	NA	NA	NA	69	NM_001044308	239556	Mm.291058	NM_001044308	ENSMUSG00000022416	Cacna1i	Ca(V)3.3	calcium channel, voltage-dependent, alpha 1I subunit	protein-coding	0.155000	0.746269	
mm_110304.1	chr12	32851506	32851706	-	1	NA	NA	NA	27490	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.000000	0.263682	
mm_122073.1	chr14	30599274	30599474	-	1	NA	NA	NA	10936	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.050000	0.592040	
mm_27052.1	chr3	27258600	27258800	-	1	NA	NA	NA	-58377	NM_009425	22035	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.025000	0.626866	
mm_35253.1	chr4	19877781	19877981	-	1	NA	NA	NA	44685	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.030000	0.427861	
mm_147847.1	chr18	63682160	63682360	-	1	NA	NA	NA	10099	NM_016792	53382	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.030000	0.447761	
mm_142765.1	chr17	49509789	49509989	-	1	NA	NA	NA	54448	NM_001008231	76441	Mm.211275	NM_001008231	ENSMUSG00000040260	Daam2	2310016D11Rik|AI843643|AW557870	dishevelled associated activator of morphogenesis 2	protein-coding	0.015000	0.507463	
mm_8825.1	chr1	162477874	162478074	-	1	NA	NA	NA	56	NM_001038619	103967	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|mKIAA0820	dynamin 3	protein-coding	0.085000	0.681592	
mm_113770.1	chr13	44840618	44840818	+	1	NA	NA	NA	109447	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.050000	0.606965	
mm_116143.1	chr13	29748262	29748462	-	1	NA	NA	NA	107311	NR_131896	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0.000000	0.442786	
mm_149569.1	chr19	12804766	12804966	+	1	NA	NA	NA	6257	NM_134152	107321	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	0.005000	0.383085	
mm_103464.1	chr11	76437091	76437291	-	1	NA	NA	NA	30048	NM_019818	56322	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	0.065000	0.651741	
mm_155833.1	chrX	100767631	100767831	+	1	NA	NA	NA	9	NM_001290402	53310	Mm.4615	NM_016747	ENSMUSG00000000881	Dlg3	Dlgh3|SAP102|mKIAA1232	discs, large homolog 3 (Drosophila)	protein-coding	0.045000	0.597015	
mm_33696.1	chr4	133574650	133574850	+	1	NA	NA	NA	5	NM_172876	242691	Mm.40110	NM_172876	ENSMUSG00000028850	Gpatch3	D930035B09Rik|Gpatc3	G patch domain containing 3	protein-coding	0.090000	0.587065	
mm_139179.1	chr17	47593431	47593631	+	1	NA	NA	NA	64	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.135000	0.706468	
mm_76775.1	chr8	95888296	95888496	-	1	NA	NA	NA	-31	NM_010325	14719	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	0.095000	0.666667	5(CCTTTTAGGAGC,+,0.00)
mm_115924.1	chr13	23562284	23562484	-	1	NA	NA	NA	-19	NM_178205	319151	Mm.261658	NM_178205	ENSMUSG00000069273	Hist1h3e	H3-f|H3.1	histone cluster 1, H3e	protein-coding	0.080000	0.606965	
mm_82284.1	chr9	7593341	7593541	-	1	NA	NA	NA	22045	NM_001310717	234911	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.000000	0.393035	
mm_66261.1	chr7	35723426	35723626	-	1	NA	NA	NA	30928	NM_178704	233115	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0.010000	0.412935	
mm_142054.1	chr17	35638199	35638399	-	1	NA	NA	NA	5396	NM_001033366	268949	Mm.296301	NM_001033366	ENSMUSG00000073408	Dpcr1	Gm630	diffuse panbronchiolitis critical region 1 (human)	protein-coding	0.040000	0.527363	
mm_160760.1	chr10	87521565	87521765	+	1	NA	NA	NA	-130	NM_008777	18478	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0.010000	0.462687	
mm_41026.1	chr5	81794272	81794472	+	1	NA	NA	NA	330341	NR_138557	67327	Mm.87058	NR_138557		1700031L13Rik	-	RIKEN cDNA 1700031L13 gene	ncRNA	0.025000	0.457711	
mm_148772.1	chr19	6095766	6095966	+	1	NA	NA	NA	-9932	NM_001009546	381204	Mm.359041	NM_001009546	ENSMUSG00000054999	Naaladl1	Gm964|Naaladasel	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding	0.010000	0.527363	
mm_144530.1	chr18	25066030	25066230	+	1	NA	NA	NA	99835	NM_001142697	66648	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.015000	0.482587	
mm_6073.1	chr1	60913242	60913442	-	1	NA	NA	NA	4317	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.010000	0.437811	
mm_23034.1	chr3	34653490	34653690	+	1	NA	NA	NA	3595	NM_011443	20674	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0.040000	0.412935	
mm_54864.1	chr6	42597475	42597675	-	1	NA	NA	NA	-203	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.010000	0.467662	
mm_144330.1	chr18	12991429	12991629	+	1	NA	NA	NA	-15461	NM_153087	225192	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0.010000	0.313433	80(TTTTTTAAACAC,+,0.00)
mm_6149.1	chr1	64937715	64937915	-	1	NA	NA	NA	19009	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.030000	0.537313	
mm_117073.1	chr13	59490647	59490847	-	1	NA	NA	NA	53704	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.000000	0.368159	
mm_46400.1	chr5	104092842	104093042	-	1	NA	NA	NA	-15334	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.010000	0.497512	
mm_120301.1	chr14	63138994	63139194	+	1	NA	NA	NA	16632	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.005000	0.487562	
mm_74485.1	chr8	4677229	4677429	-	1	NA	NA	NA	64159	NM_145591	233987	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.075000	0.542289	
mm_2505.1	chr1	106206472	106206672	+	1	NA	NA	NA	34703	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.005000	0.343284	
mm_28734.1	chr3	95736456	95736656	-	1	NA	NA	NA	-1583	NR_105981	102466787		NR_105981	ENSMUSG00000098737	Mir7014	Gm27837|mmu-mir-7014	microRNA 7014	ncRNA	0.050000	0.577114	
mm_35212.1	chr4	19631891	19632091	-	1	NA	NA	NA	56925	NM_025476	66302	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	0.015000	0.388060	-44(TTCTATTAAAGC,-,0.00)
mm_172046.1	chr6	128473380	128473580	+	1	NA	NA	NA	34723	NR_028592	791299	Mm.297516	NR_028592	ENSMUSG00000059659	Gm10069	ENSMUSG00000059659	predicted gene 10069	ncRNA	0.020000	0.487562	-32(GCCTATATAAGG,-,0.00)
mm_76911.1	chr8	105931976	105932176	-	1	NA	NA	NA	1786	NM_023182	109660	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.025000	0.482587	
mm_82244.1	chr9	4507863	4508063	-	1	NA	NA	NA	124426	NM_145609	78100	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	0.000000	0.338308	
mm_51183.1	chr6	70844439	70844639	+	1	NA	NA	NA	24	NM_001313918	13666	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.105000	0.646766	
mm_53248.1	chr6	127577891	127578091	+	1	NA	NA	NA	16	NM_001033464	381812	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0.020000	0.567164	-70(GCTTATCAAGGC,+,0.00)
mm_125962.1	chr15	76267985	76268185	+	1	NA	NA	NA	-4	NM_028852	74281	Mm.159156	NM_028852	ENSMUSG00000049653	Spatc1	1700084J23Rik|speriolin	spermatogenesis and centriole associated 1	protein-coding	0.010000	0.621891	
mm_57486.1	chr6	125265250	125265450	-	1	NA	NA	NA	-175	NR_015527	73870	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.030000	0.567164	
mm_165314.1	chr2	103372586	103372786	-	1	NA	NA	NA	78	NR_040332	319854	Mm.403818	NR_040332	ENSMUSG00000087278	A930006I01Rik	-	RIKEN cDNA A930006I01 gene	ncRNA	0.020000	0.497512	
mm_114550.1	chr13	73963771	73963971	+	1	NA	NA	NA	9	NM_027704	71164	Mm.66995	NM_027704	ENSMUSG00000069189	Zdhhc11	4933421L13Rik|DHHC-11|Zdhhc20	zinc finger, DHHC domain containing 11	protein-coding	0.025000	0.482587	-66(GGCTTTATGAGC,-,0.00)
mm_158061.1	chrX	101084153	101084353	-	1	NA	NA	NA	1152	NM_001301840	11989	Mm.5140	NM_007515	ENSMUSG00000031297	Slc7a3	Atrc3|CAT-3|CAT3|SLC7A1|SLC7A2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 3	protein-coding	0.020000	0.492537	
mm_104904.1	chr11	99643460	99643660	-	1	NA	NA	NA	529	NM_029613	76444	Mm.348022	NM_029613	ENSMUSG00000045109	Krtap4-7	2310037K05Rik|KAP4.7|KRTAP4.7	keratin associated protein 4-7	protein-coding	0.025000	0.597015	
mm_127415.1	chr15	101258590	101258790	+	1	NA	NA	NA	-8156	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.030000	0.592040	
mm_106222.1	chr11	117078853	117079053	-	1	NA	NA	NA	1605	NR_105853	102465258		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.010000	0.487562	
mm_109534.1	chr12	111542087	111542287	+	1	NA	NA	NA	1241	NR_033168	100316932	Mm.484709	NR_033168	ENSMUSG00000064493	Snora28	MBI-13	small nucleolar RNA, H/ACA box 28	snoRNA	0.010000	0.422886	
mm_5366.1	chr1	26687360	26687560	-	1	NA	NA	NA	0	NM_001033764	210940	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	0.000000	0.477612	
mm_83063.1	chr9	37546858	37547058	-	1	NA	NA	NA	5787	NM_022029	64011	Mm.335065	NM_022029	ENSMUSG00000053310	Nrgn	0710001B06Rik|AI838505|NG|NG/RC3|Pss1|R75334|RC3	neurogranin	protein-coding	0.005000	0.348259	
mm_75173.1	chr8	36732803	36733003	-	1	NA	NA	NA	151	NM_001194941	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.130000	0.711443	
mm_99400.1	chr11	102189722	102189922	+	1	NA	NA	NA	123	NM_175935	68401	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	0.075000	0.676617	-7(GGCTAGAAAGGG,-,0.00)
mm_140561.1	chr17	8147619	8147819	-	1	NA	NA	NA	69	NM_001083938	100037283	Mm.426736	NM_001083938	ENSMUSG00000095687	Rnaset2a	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2A	protein-coding	0.120000	0.746269	
mm_102724.1	chr11	67237354	67237554	-	1	NA	NA	NA	-358	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.035000	0.502488	-35(GCCTATAAAGCT,+,0.00)
mm_92207.1	chr10	68150066	68150266	-	1	NA	NA	NA	128560	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.005000	0.318408	
mm_63879.1	chr7	137129161	137129361	+	1	NA	NA	NA	-105422	NR_045885	100038555	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	ENSMUSG00000073800	predicted gene 10578	ncRNA	0.005000	0.383085	
mm_101974.1	chr11	50325533	50325733	-	1	NA	NA	NA	40	NM_001110499	12330	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	0.130000	0.691542	
mm_35981.1	chr4	54190072	54190272	-	1	NA	NA	NA	364127	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.015000	0.472637	
mm_27419.1	chr3	51517664	51517864	-	1	NA	NA	NA	33798	NM_016858	19338	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.005000	0.412935	
mm_123929.1	chr14	73366276	73366476	-	1	NA	NA	NA	18895	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.035000	0.507463	
mm_140926.1	chr17	24220671	24220871	-	1	NA	NA	NA	-2	NM_028056	72016	Mm.23881	NM_028056	ENSMUSG00000024118	1600002H07Rik	-	RIKEN cDNA 1600002H07 gene	protein-coding	0.070000	0.582090	
mm_84141.1	chr9	59330052	59330252	-	1	NA	NA	NA	23356	NM_175325	102774	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	0.020000	0.427861	
mm_120650.1	chr14	70530764	70530964	+	1	NA	NA	NA	43	NM_145219	213469	Mm.41708	NM_145219	ENSMUSG00000033595	Lgi3	AI841179|AW049851	leucine-rich repeat LGI family, member 3	protein-coding	0.125000	0.741294	
mm_33941.1	chr4	136945604	136945804	+	1	NA	NA	NA	11112	NM_007939	13842	Mm.1390	NM_007939	ENSMUSG00000028661	Epha8	AW047546|Eek|Hek3|mKIAA1459	Eph receptor A8	protein-coding	0.060000	0.636816	
mm_19718.1	chr2	104410514	104410714	-	1	NA	NA	NA	-280	NM_001033347	241589	Mm.358909	NM_001033347	ENSMUSG00000068373	D430041D05Rik	9630056G07Rik|G2	RIKEN cDNA D430041D05 gene	protein-coding	0.130000	0.696517	
mm_141381.1	chr17	29078932	29079132	-	1	NA	NA	NA	94	NR_036469	100504267	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|OTTMUSG00000031656|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0.030000	0.592040	
mm_33813.1	chr4	135272078	135272278	+	1	NA	NA	NA	582	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.070000	0.582090	
mm_38165.1	chr4	135216728	135216928	-	1	NA	NA	NA	55932	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.030000	0.567164	
mm_110677.1	chr12	66284323	66284523	-	1	NA	NA	NA	-22	NM_001162933	238217	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding	0.070000	0.577114	
mm_77849.1	chr9	5303542	5303742	+	1	NA	NA	NA	5125	NM_009807	12362	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.000000	0.417910	
mm_125271.1	chr15	36173946	36174146	+	1	NA	NA	NA	36	NM_001039368	17749	Mm.27375	NM_023127	ENSMUSG00000045996	Polr2k	ABC10-alpha|MafY|Mt1a|RPABC4|RPB10alpha|RPB12|RPB7.0	polymerase (RNA) II (DNA directed) polypeptide K	protein-coding	0.075000	0.587065	
mm_78035.1	chr9	13832963	13833163	+	1	NA	NA	NA	5336	NM_176836	72826	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0.005000	0.477612	
mm_165092.1	chr19	53319165	53319365	+	1	NA	NA	NA	8759	NM_001008542	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.000000	0.398010	
mm_86778.1	chr10	20170642	20170842	+	1	NA	NA	NA	21822	NM_001198635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.010000	0.537313	
mm_114693.1	chr13	81784075	81784275	+	1	NA	NA	NA	883	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.015000	0.293532	26(CCTTTTATATTT,+,0.00)
mm_9895.1	chr1	186705241	186705441	-	1	NA	NA	NA	648	NM_009367	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.150000	0.716418	
mm_57096.1	chr6	122590277	122590477	-	1	NA	NA	NA	12067	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.005000	0.432836	
mm_162125.1	chrX	71991744	71991944	+	1	NA	NA	NA	-5	NM_007724	12789	Mm.5097	NM_007724	ENSMUSG00000005864	Cnga2	CNG2|Cnca|Cncg4|OCNC1	cyclic nucleotide gated channel alpha 2	protein-coding	0.015000	0.552239	
mm_69083.1	chr7	127016472	127016672	-	1	NA	NA	NA	780	NM_030240	67278	Mm.345385	NM_030240	ENSMUSG00000030680	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0.045000	0.631841	
mm_115249.1	chr13	110396736	110396936	+	1	NA	NA	NA	1792	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.010000	0.517413	
mm_35737.1	chr4	45320177	45320377	-	1	NA	NA	NA	326	NM_025513	66362	Mm.275788	NM_025513	ENSMUSG00000028322	Exosc3	2310005D06Rik|AI593501|Rrp40	exosome component 3	protein-coding	0.110000	0.666667	
mm_99722.1	chr11	106300253	106300453	+	1	NA	NA	NA	1543	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.030000	0.557214	
mm_75539.1	chr8	57332760	57332960	-	1	NA	NA	NA	425	NR_131041	75996	Mm.399754	NR_131041	ENSMUSG00000097910	5033428I22Rik	-	RIKEN cDNA 5033428I22 gene	ncRNA	0.035000	0.577114	
mm_54376.1	chr6	31202230	31202430	-	1	NA	NA	NA	16144	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.000000	0.373134	
mm_25641.1	chr3	121291727	121291927	+	1	NA	NA	NA	10	NM_024178	66789	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0.060000	0.572139	
mm_143976.1	chr17	87438428	87438628	-	1	NA	NA	NA	8407	NM_007589	12314	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017	calmodulin 2	protein-coding	0.000000	0.353234	
mm_172943.1	chr9	81435847	81436047	+	1	NA	NA	NA	-195983	NR_040394	319405	Mm.246494	NR_040393	ENSMUSG00000097466	D430036J16Rik	-	RIKEN cDNA D430036J16 gene	ncRNA	0.020000	0.442786	
mm_68272.1	chr7	105596239	105596439	-	1	NA	NA	NA	3777	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.020000	0.472637	
mm_97745.1	chr11	80472516	80472716	+	1	NA	NA	NA	-4430	NM_009871	12569	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0.000000	0.348259	-3(CTTTTTAAATAG,+,0.00)
mm_10949.1	chr2	25608438	25608638	+	1	NA	NA	NA	-92	NM_001024616	227624	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	0.100000	0.636816	-7(CCTTTTCTAGCA,+,0.00)
mm_72369.1	chr8	80948897	80949097	+	1	NA	NA	NA	65909	NM_027554	74841	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	0.000000	0.447761	-75(CATTTTAAAAGC,-,0.00)
mm_46779.1	chr5	112475678	112475878	-	1	NA	NA	NA	26352	NM_001177504	625464	Mm.389676	NM_001177504	ENSMUSG00000072722	Gm6588	EG625464	predicted gene 6588	protein-coding	0.035000	0.517413	
mm_9898.1	chr1	186705954	186706154	-	1	NA	NA	NA	-65	NM_001329107	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.040000	0.532338	
mm_68075.1	chr7	101869167	101869367	-	1	NA	NA	NA	1521	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.020000	0.542289	
mm_100661.1	chr11	3266248	3266448	-	1	NA	NA	NA	38	NM_007879	13494	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	0.120000	0.666667	
mm_51066.1	chr6	66264046	66264246	+	1	NA	NA	NA	-8359	NR_136927	102633773	Mm.272086	NR_136927	ENSMUSG00000107653	Gm31520	-	sterol-C5-desaturase pseudogene	pseudo	0.000000	0.457711	
mm_105454.1	chr11	104503422	104503622	-	1	NA	NA	NA	47098	NM_001285990	217232	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	0.010000	0.437811	
mm_156697.1	chrX	159482893	159483093	+	1	NA	NA	NA	23868	NM_001313753	78283	Mm.160079	NM_001081124	ENSMUSG00000041020	Map7d2	1600028E09Rik|2900002G04Rik|5330432J06Rik|C030036K04Rik|Mtap7d2	MAP7 domain containing 2	protein-coding	0.020000	0.462687	
mm_18022.1	chr2	38613615	38613815	-	1	NA	NA	NA	30191	NM_011187	19177	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0.010000	0.447761	
mm_171309.1	chr3	94604704	94604904	-	1	NA	NA	NA	-22088	NM_029721	76742	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.055000	0.507463	
mm_71196.1	chr8	40882280	40882480	+	1	NA	NA	NA	20013	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.005000	0.298507	-46(TTATATAAAAGC,-,0.00)
mm_31205.1	chr4	43730339	43730539	+	1	NA	NA	NA	405	NR_033355	71406	Mm.33063	NM_027789	ENSMUSG00000028475	5430416O09Rik	AI481365	RIKEN cDNA 5430416O09 gene	ncRNA	0.015000	0.621891	
mm_50422.1	chr6	48833732	48833932	+	1	NA	NA	NA	7156	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.015000	0.457711	
mm_43355.1	chr5	135187219	135187419	+	1	NA	NA	NA	-4	NM_011714	22385	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.110000	0.666667	
mm_92403.1	chr10	76709401	76709601	-	1	NA	NA	NA	16543	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.020000	0.522388	57(CTGTCTTAAAGG,-,0.00)
mm_57373.1	chr6	124812393	124812593	-	1	NA	NA	NA	1803	NM_009415	21991	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.050000	0.547264	
mm_122459.1	chr14	45442386	45442586	-	1	NA	NA	NA	-53690	NM_019425	54342	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding	0.000000	0.388060	
mm_122911.1	chr14	54957315	54957515	-	1	NA	NA	NA	-8273	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.015000	0.537313	
mm_56483.1	chr6	99096167	99096367	-	1	NA	NA	NA	-67969	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.040000	0.527363	
mm_78832.1	chr9	44140500	44140700	+	1	NA	NA	NA	5942	NM_023061	84004	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.005000	0.587065	
mm_116854.1	chr13	54762602	54762802	-	1	NA	NA	NA	3738	NM_033610	104069	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	0.010000	0.592040	
mm_93989.1	chr10	127522248	127522448	-	1	NA	NA	NA	96	NM_001252316	108037	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0.065000	0.522388	
mm_124237.1	chr14	101477186	101477386	-	1	NA	NA	NA	131905	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.025000	0.507463	
mm_156326.1	chrX	138914298	138914498	+	1	NA	NA	NA	-32	NM_013724	27206	Mm.482319	NM_013724	ENSMUSG00000052854	Nrk	AA407323|AA409510|AI225895|AV168563|AW538185|Nesk	Nik related kinase	protein-coding	0.105000	0.696517	
mm_32784.1	chr4	116708607	116708807	+	1	NA	NA	NA	-223	NM_026714	68394	Mm.425201	NM_026714	ENSMUSG00000028689	Ccdc163	0610037D15Rik|4933430J04Rik	coiled-coil domain containing 163	protein-coding	0.055000	0.497512	
mm_63747.1	chr7	130948986	130949186	+	1	NA	NA	NA	12883	NM_019564	56213	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	0.000000	0.497512	
mm_167422.1	chr8	111596001	111596201	+	1	NA	NA	NA	34221	NM_027570	52815	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	0.045000	0.577114	
mm_28359.1	chr3	89773150	89773350	-	1	NA	NA	NA	150	NR_130957	74034	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	0.115000	0.721393	
mm_118814.1	chr14	25466639	25466839	+	1	NA	NA	NA	7554	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.015000	0.587065	
mm_30658.1	chr4	8939659	8939859	+	1	NA	NA	NA	249353	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.020000	0.522388	73(CCTTTTAGGTGG,+,0.00)
mm_62045.1	chr7	92324561	92324761	+	1	NA	NA	NA	89691	NM_001243047	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.005000	0.328358	
mm_61344.1	chr7	68286043	68286243	+	1	NA	NA	NA	-9549	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.015000	0.417910	
mm_110783.1	chr12	71113968	71114168	-	1	NA	NA	NA	2640	NM_029227	75266	Mm.402075	NM_029227	ENSMUSG00000021078	Tomm20l	4930553D19Rik	translocase of outer mitochondrial membrane 20 homolog (yeast)-like	protein-coding	0.040000	0.552239	
mm_79699.1	chr9	60837808	60838008	+	1	NA	NA	NA	43360	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.035000	0.532338	
mm_60701.1	chr7	45212943	45213143	+	1	NA	NA	NA	-1160	NM_015789	50722	Mm.27287	NM_015789	ENSMUSG00000030792	Dkkl1	AI414495|SGY|SGY-1|SGY1|Soggy|mSgy	dickkopf-like 1	protein-coding	0.025000	0.447761	
mm_41259.1	chr5	88992777	88992977	+	1	NA	NA	NA	105617	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.010000	0.407960	
mm_147489.1	chr18	47333242	47333442	-	1	NA	NA	NA	35526	NM_018744	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.015000	0.487562	
mm_136454.1	chr16	94997512	94997712	-	1	NA	NA	NA	84	NM_001025584	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.060000	0.601990	
mm_61653.1	chr7	80472331	80472531	+	1	NA	NA	NA	62567	NM_007550	12144	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ helicase-like	protein-coding	0.005000	0.457711	
mm_50911.1	chr6	57582683	57582883	+	1	NA	NA	NA	1791	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.000000	0.343284	
mm_101203.1	chr11	19018865	19019065	-	1	NA	NA	NA	4	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.070000	0.572139	86(CCTTTAAGACAA,+,0.00)
mm_128769.1	chr15	66500781	66500981	-	1	NA	NA	NA	29	NM_019457	54562	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	0.035000	0.582090	
mm_87150.1	chr10	34898681	34898881	+	1	NA	NA	NA	415381	NM_010237	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.025000	0.507463	
mm_23768.1	chr3	75164996	75165196	+	1	NA	NA	NA	-21324	NM_172515	213234	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding	0.050000	0.577114	
mm_97378.1	chr11	77711461	77711661	+	1	NA	NA	NA	13732	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.000000	0.283582	42(CTTTTTATACAT,+,0.00)
mm_143389.1	chr17	69274503	69274703	-	1	NA	NA	NA	2603	NR_045428	69750	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.015000	0.363184	
mm_134995.1	chr16	32164275	32164475	-	1	NA	NA	NA	1101	NM_146069	224109	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.015000	0.457711	
mm_34984.1	chr4	156026026	156026226	+	1	NA	NA	NA	-216	NM_009400	21936	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	0.005000	0.542289	
mm_108503.1	chr12	83949987	83950187	+	1	NA	NA	NA	-521	NM_023633	71952	Mm.251483	NM_023633	ENSMUSG00000046791	2410016O06Rik	MAPJD|NO66	RIKEN cDNA 2410016O06 gene	protein-coding	0.010000	0.462687	
mm_134781.1	chr16	23981188	23981388	-	1	NA	NA	NA	7324	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.040000	0.477612	
mm_155194.1	chrX	56454824	56455024	+	1	NA	NA	NA	85	NM_172779	236790	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	0.055000	0.601990	
mm_40786.1	chr5	67404508	67404708	+	1	NA	NA	NA	23191	NM_001164806	666938	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.030000	0.577114	
mm_112214.1	chr12	113428545	113428745	-	1	NA	NA	NA	-60920	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.462687	
mm_58826.1	chr7	16734307	16734507	+	1	NA	NA	NA	-4037	NM_198613	232910	Mm.333597	NM_198613	ENSMUSG00000008036	Ap2s1	AI043088	adaptor-related protein complex 2, sigma 1 subunit	protein-coding	0.010000	0.517413	
mm_121262.1	chr14	103073181	103073381	+	1	NA	NA	NA	3065	NM_001033242	211286	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0.020000	0.487562	
mm_167011.1	chr7	59324049	59324249	-	1	NA	NA	NA	0	NR_015479	330544	Mm.9002	NR_015479	ENSMUSG00000100826	C230091D08Rik	-	RIKEN cDNA C230091D08 gene	ncRNA	0.000000	0.492537	
mm_73884.1	chr8	119345150	119345350	+	1	NA	NA	NA	712	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.045000	0.572139	
mm_159623.1	chr4	135398116	135398316	-	1	NA	NA	NA	11	NM_001243306	230822	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	0.070000	0.716418	
mm_15765.1	chr2	164316643	164316843	+	1	NA	NA	NA	-8	NM_013679	20945	Mm.439686	NM_013679	ENSMUSG00000017000	Svs6	MSVSP99|Svp6	seminal vesicle secretory protein 6	protein-coding	0.005000	0.487562	
mm_12797.1	chr2	79639101	79639301	+	1	NA	NA	NA	3776	NM_080558	70599	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0.010000	0.502488	
mm_53471.1	chr6	134924556	134924756	+	1	NA	NA	NA	4255	NM_009875	12576	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	0.005000	0.393035	
mm_171982.1	chr5	92083558	92083758	-	1	NA	NA	NA	-60	NM_001080796	23881	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.100000	0.651741	
mm_23934.1	chr3	84039280	84039480	+	1	NA	NA	NA	781	NM_172681	229473	Mm.28838	NM_172681	ENSMUSG00000033767	D930015E06Rik	Kiaa0922|mKIAA0922	RIKEN cDNA D930015E06 gene	protein-coding	0.075000	0.616915	
mm_41075.1	chr5	87670907	87671107	+	1	NA	NA	NA	4799	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.010000	0.298507	
mm_110727.1	chr12	69724758	69724958	-	1	NA	NA	NA	16	NM_145443	217666	Mm.103362	NM_145443	ENSMUSG00000020988	L2hgdh	BC016226	L-2-hydroxyglutarate dehydrogenase	protein-coding	0.105000	0.686567	
mm_72711.1	chr8	84990517	84990717	+	1	NA	NA	NA	22	NM_001167991	170833	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	0.100000	0.696517	
mm_101510.1	chr11	32267530	32267730	-	1	NA	NA	NA	77	NM_181569	17168	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	0.150000	0.741294	
mm_155891.1	chrX	101652299	101652499	+	1	NA	NA	NA	12181	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.005000	0.412935	
mm_86471.1	chr10	4611751	4611951	+	1	NA	NA	NA	-138	NM_001302532	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.015000	0.472637	
mm_134847.1	chr16	26831522	26831722	-	1	NA	NA	NA	-76120	NR_105063	100504628	Mm.393275	NR_105063	ENSMUSG00000092545	Gm20319	-	predicted gene, 20319	ncRNA	0.020000	0.422886	
mm_103158.1	chr11	70433215	70433415	-	1	NA	NA	NA	735	NM_001271358	216869	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872	arrestin, beta 2	protein-coding	0.015000	0.517413	
mm_160014.1	chr6	128300735	128300935	-	1	NA	NA	NA	-22	NM_011567	21679	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	0.085000	0.671642	
mm_55245.1	chr6	52640176	52640376	-	1	NA	NA	NA	24	NM_145567	58875	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	0.120000	0.731343	
mm_25807.1	chr3	127789815	127790015	+	1	NA	NA	NA	2	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.085000	0.681592	
mm_50193.1	chr6	41852669	41852869	+	1	NA	NA	NA	5220	NM_008843	18716	Mm.214755	NM_008843	ENSMUSG00000058499	Pip	GCDFP-15|GP17|mSMGP	prolactin induced protein	protein-coding	0.005000	0.432836	
mm_26007.1	chr3	135298754	135298954	+	1	NA	NA	NA	-8846	NM_178877	97086	Mm.441764	NM_178877	ENSMUSG00000037994	Slc9b2	C80638|NHA2|NHE10|Nhedc2|nha-oc|nhaoc	solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2	protein-coding	0.005000	0.487562	
mm_134915.1	chr16	30310704	30310904	-	1	NA	NA	NA	-23	NM_008148	14729	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	0.000000	0.432836	
mm_15236.1	chr2	154650762	154650962	+	1	NA	NA	NA	-6164	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.005000	0.462687	21(TGCTATAAAAGG,-,0.00)
mm_31265.1	chr4	45297063	45297263	+	1	NA	NA	NA	-5	NM_027266	69934	Mm.46761	NM_027266	ENSMUSG00000035601	Trmt10b	2610042J10Rik|Rg9mtd3|Rnmtd3	tRNA methyltransferase 10B	protein-coding	0.030000	0.527363	
mm_118643.1	chr14	21500788	21500988	+	1	NA	NA	NA	1103	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.095000	0.621891	
mm_82911.1	chr9	34589206	34589406	-	1	NA	NA	NA	100575	NM_001190911	67703	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kin of IRRE like 3 (Drosophila)	protein-coding	0.010000	0.442786	
mm_7075.1	chr1	88213846	88214046	-	1	NA	NA	NA	1987	NM_201645	394436	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0.010000	0.512438	
mm_105910.1	chr11	114983487	114983687	-	1	NA	NA	NA	6299	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.000000	0.442786	
mm_116706.1	chr13	50991266	50991466	-	1	NA	NA	NA	109361	NR_029463	77428	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0.035000	0.567164	
mm_160445.1	chr8	104534534	104534734	+	1	NA	NA	NA	3	NM_144931	234664	Mm.237670	NM_144931	ENSMUSG00000031878	Nae1	59kDa|Appbp1	NEDD8 activating enzyme E1 subunit 1	protein-coding	0.100000	0.691542	
mm_82960.1	chr9	35611770	35611970	-	1	NA	NA	NA	15	NM_020264	56872	Mm.390143	NM_020264	ENSMUSG00000032099	Pate4	9530004K16Rik|Pate-B|Svs7	prostate and testis expressed 4	protein-coding	0.010000	0.417910	-33(CTTTATATAGAG,+,0.00)
mm_52246.1	chr6	106118838	106119038	+	1	NA	NA	NA	173	NM_001109751	269784	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding	0.045000	0.577114	
mm_151569.1	chr19	60766235	60766435	+	1	NA	NA	NA	8050	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.010000	0.383085	
mm_41987.1	chr5	107724105	107724305	+	1	NA	NA	NA	138	NM_010278	14581	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.020000	0.597015	
mm_165097.1	chr19	55183570	55183770	+	1	NA	NA	NA	2785	NM_009348	21684	Mm.42139	NM_009348	ENSMUSG00000024979	Tectb	Tctnb	tectorin beta	protein-coding	0.030000	0.502488	
mm_109058.1	chr12	104340557	104340757	+	1	NA	NA	NA	2171	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.005000	0.452736	
mm_32328.1	chr4	104232863	104233063	+	1	NA	NA	NA	-134575	NR_104385	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding	0.015000	0.407960	
mm_68889.1	chr7	126448139	126448339	-	1	NA	NA	NA	14834	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.040000	0.532338	
mm_12790.1	chr2	79635180	79635380	+	1	NA	NA	NA	-145	NM_080558	70599	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0.115000	0.741294	-55(GGCTAGAAAGGG,-,0.00)
mm_40750.1	chr5	66770839	66771039	+	1	NA	NA	NA	25099	NM_001001980	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.000000	0.412935	
mm_113103.1	chr13	24397286	24397486	+	1	NA	NA	NA	-17736	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.000000	0.412935	
mm_24951.1	chr3	96635369	96635569	+	1	NA	NA	NA	39	NM_001162387	18632	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	0.070000	0.611940	-1(GTGCTTAAAAGC,-,0.00),1(GCTTAAAAGCCG,+,0.00)
mm_152423.1	chr19	10675005	10675205	-	1	NA	NA	NA	2966	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.015000	0.582090	
mm_101652.1	chr11	36628714	36628914	-	1	NA	NA	NA	315427	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.010000	0.402985	
mm_86023.1	chr9	112235806	112236006	-	1	NA	NA	NA	-1065	NM_001177619	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.020000	0.582090	
mm_136182.1	chr16	88896382	88896582	-	1	NA	NA	NA	-33	NM_010676	16704	Mm.3503	NM_010676	ENSMUSG00000051802	Krtap19-5	Krtap8-2	keratin associated protein 19-5	protein-coding	0.025000	0.497512	
mm_164644.1	chr17	35236589	35236789	+	1	NA	NA	NA	93	NM_023179	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.050000	0.597015	
mm_52141.1	chr6	97972503	97972703	+	1	NA	NA	NA	-19180	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.348259	
mm_92253.1	chr10	70599193	70599393	-	1	NA	NA	NA	-2	NM_178621	70911	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding	0.180000	0.781095	
mm_3314.1	chr1	137906666	137906866	+	1	NA	NA	NA	-59689	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.010000	0.432836	
mm_81551.1	chr9	110333199	110333399	+	1	NA	NA	NA	11	NM_001103162	235623	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0.095000	0.696517	
mm_48098.1	chr5	137062971	137063171	-	1	NA	NA	NA	9201	NM_008871	18787	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.015000	0.477612	
mm_88662.1	chr10	80016570	80016770	+	1	NA	NA	NA	-2	NM_001142701	70719	Mm.243954	NM_027521	ENSMUSG00000035697	Hmha1	6330406L22Rik|AW539505|Ha-1	histocompatibility (minor) HA-1	protein-coding	0.015000	0.611940	
mm_44419.1	chr5	18495113	18495313	-	1	NA	NA	NA	-134800	NM_010305	14677	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding	0.000000	0.507463	43(CTCTCTTTAAGC,-,0.00)
mm_59921.1	chr7	30422184	30422384	+	1	NA	NA	NA	-1020	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.150000	0.711443	
mm_125113.1	chr15	28154847	28155047	+	1	NA	NA	NA	-48819	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.025000	0.601990	
mm_10696.1	chr2	22622462	22622662	+	1	NA	NA	NA	235	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.095000	0.661692	
mm_124985.1	chr15	21111249	21111449	+	1	NA	NA	NA	-103	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.030000	0.467662	
mm_136271.1	chr16	91056316	91056516	-	1	NA	NA	NA	-12037	NM_026110	67367	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.015000	0.482587	
mm_14919.1	chr2	151039409	151039609	+	1	NA	NA	NA	-130	NM_026086	67311	Mm.480682	NM_026086	ENSMUSG00000053916	Nanp	1600031M04Rik|Hdhd4	N-acetylneuraminic acid phosphatase	protein-coding	0.065000	0.562189	
mm_162679.1	chr10	10334551	10334751	-	1	NA	NA	NA	137663	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.010000	0.447761	
mm_104748.1	chr11	98463347	98463547	-	1	NA	NA	NA	16613	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.000000	0.447761	
mm_128419.1	chr15	45114768	45114968	-	1	NA	NA	NA	66	NM_026200	67498	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding	0.050000	0.606965	
mm_163528.1	chr13	6123764	6123964	+	1	NA	NA	NA	262375	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.000000	0.537313	
mm_68170.1	chr7	103813820	103814020	-	1	NA	NA	NA	3	NM_016956	15130	Mm.288567	NM_016956		Hbb-b2	AI036344|Hbb2|Hbbt2|beta2	hemoglobin, beta adult minor chain	protein-coding	0.005000	0.522388	-36(GGGTATATAAAG,-,0.00)
mm_15414.1	chr2	156839721	156839921	+	1	NA	NA	NA	-186	NM_001291124	228839	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0.055000	0.681592	
mm_114195.1	chr13	55904972	55905172	+	1	NA	NA	NA	-73647	NM_011097	18740	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.010000	0.537313	
mm_7203.1	chr1	93023047	93023247	-	1	NA	NA	NA	16813	NM_001159658	208760	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0.050000	0.572139	
mm_51505.1	chr6	83121643	83121843	+	1	NA	NA	NA	-282	NM_001083922	22377	Mm.1109	NM_016757	ENSMUSG00000030035	Wbp1	AI255152	WW domain binding protein 1	protein-coding	0.050000	0.517413	
mm_37291.1	chr4	119176723	119176923	-	1	NA	NA	NA	-2628	NM_001145936	195522	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	0.010000	0.427861	4(GCTTTTCTAGCA,+,0.00)
mm_106779.1	chr12	4635500	4635700	+	1	NA	NA	NA	42592	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.020000	0.432836	
mm_137735.1	chr17	29347896	29348096	+	1	NA	NA	NA	-64	NM_001347335	56462	Mm.285322	NM_019880	ENSMUSG00000024012	Mtch1	2310034O17Rik|AI255158|AU018396|C77849|PSAP	mitochondrial carrier 1	protein-coding	0.075000	0.646766	
mm_42101.1	chr5	110448249	110448449	+	1	NA	NA	NA	154	NM_001317042	381668	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.150000	0.791045	
mm_9167.1	chr1	170975910	170976110	-	1	NA	NA	NA	61	NM_001077189	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.020000	0.522388	
mm_103441.1	chr11	76015337	76015537	-	1	NA	NA	NA	12345	NM_029658	76566	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	0.010000	0.512438	
mm_26824.1	chr3	10335620	10335820	-	1	NA	NA	NA	-64	NM_001010834	241877	Mm.442146	NM_001010834	ENSMUSG00000058921	Slc10a5	Gm405|mP5	solute carrier family 10 (sodium/bile acid cotransporter family), member 5	protein-coding	0.015000	0.402985	
mm_14656.1	chr2	137028007	137028207	+	1	NA	NA	NA	88413	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.005000	0.288557	
mm_84040.1	chr9	57766122	57766322	-	1	NA	NA	NA	-362	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.045000	0.572139	-34(CTCTCTAAAGGC,-,0.00)
mm_128508.1	chr15	53266852	53267052	-	1	NA	NA	NA	79231	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.005000	0.497512	
mm_72391.1	chr8	81767538	81767738	+	1	NA	NA	NA	425076	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.015000	0.487562	
mm_68076.1	chr7	101869197	101869397	-	1	NA	NA	NA	1491	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.020000	0.527363	
mm_41533.1	chr5	92809304	92809504	+	1	NA	NA	NA	22	NM_001077595	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.040000	0.616915	
mm_165626.1	chr3	65473251	65473451	+	1	NA	NA	NA	-55096	NM_178892	99929	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	0.010000	0.422886	
mm_161302.1	chr14	30879403	30879603	+	1	NA	NA	NA	246	NM_181390	66175	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0.030000	0.542289	5(GACTATATAAGT,-,0.00)
mm_168171.1	chr10	55504724	55504924	-	1	NA	NA	NA	-602093	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding	0.020000	0.432836	
mm_78002.1	chr9	9434541	9434741	+	1	NA	NA	NA	-195628	NM_027823	71544	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0.025000	0.457711	
mm_97519.1	chr11	78499775	78499975	+	1	NA	NA	NA	755	NM_011707	22370	Mm.3667	NM_011707	ENSMUSG00000017344	Vtn	AI256434|Vn	vitronectin	protein-coding	0.045000	0.567164	
mm_12346.1	chr2	69748894	69749094	+	1	NA	NA	NA	25906	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.025000	0.398010	
mm_70390.1	chr8	10899852	10900052	+	1	NA	NA	NA	30	NR_102285	71624	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0.035000	0.512438	
mm_149645.1	chr19	17479585	17479785	+	1	NA	NA	NA	85642	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.015000	0.482587	
mm_93779.1	chr10	120476378	120476578	-	1	NA	NA	NA	-9	NM_010441	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0.055000	0.611940	
mm_167255.1	chr8	25068053	25068253	+	1	NA	NA	NA	-29191	NM_001081187	330723	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0.025000	0.562189	
mm_15133.1	chr2	153938121	153938321	+	1	NA	NA	NA	-2641	NM_001034875	381399	Mm.315572	NM_001034875	ENSMUSG00000074665	Bpifb4	Gm1006|Lplunc4	BPI fold containing family B, member 4	protein-coding	0.005000	0.557214	-36(CACTTTATAAAG,-,0.00),-34(CTTTATAAAGCT,+,0.00)
mm_79425.1	chr9	55430295	55430495	+	1	NA	NA	NA	81848	NM_145615	110842	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	0.065000	0.666667	
mm_89451.1	chr10	93160565	93160765	+	1	NA	NA	NA	-211	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.110000	0.681592	
mm_71036.1	chr8	33653557	33653757	+	1	NA	NA	NA	419	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.170000	0.810945	
mm_122045.1	chr14	30024503	30024703	-	1	NA	NA	NA	1970	NM_175343	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.030000	0.447761	
mm_149763.1	chr19	22887812	22888012	+	1	NA	NA	NA	137307	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.010000	0.348259	
mm_46343.1	chr5	102052926	102053126	-	1	NA	NA	NA	16895	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.015000	0.532338	
mm_129876.1	chr15	83432739	83432939	-	1	NA	NA	NA	11	NM_011862	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.015000	0.537313	
mm_119084.1	chr14	30889518	30889718	+	1	NA	NA	NA	3142	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.040000	0.532338	
mm_106843.1	chr12	8007407	8007607	+	1	NA	NA	NA	29830	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.025000	0.467662	
mm_85487.1	chr9	106106094	106106294	-	1	NA	NA	NA	-9503	NM_026763	68553	Mm.28854	NM_026763	ENSMUSG00000032572	Col6a4	1110001D15Rik|AI413310|AU023415|Dvwa|EG235580|Vwa6	collagen, type VI, alpha 4	protein-coding	0.020000	0.482587	
mm_64343.1	chr7	142380691	142380891	+	1	NA	NA	NA	-7045	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.015000	0.502488	
mm_166714.1	chr6	118197244	118197444	-	1	NA	NA	NA	400	NM_009050	19713	Mm.57199	NM_009050	ENSMUSG00000030110	Ret	PTC|RET51|RET9|c-Ret	ret proto-oncogene	protein-coding	0.105000	0.736318	
mm_146256.1	chr18	77794272	77794472	+	1	NA	NA	NA	-178	NM_013831	19201	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.060000	0.631841	
mm_27876.1	chr3	79169783	79169983	-	1	NA	NA	NA	-24008	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.030000	0.472637	
mm_172940.1	chr9	78821791	78821991	-	1	NA	NA	NA	206345	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.120000	0.636816	
mm_169899.1	chr16	52083562	52083762	+	1	NA	NA	NA	52113	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.005000	0.527363	
mm_37612.1	chr4	126967982	126968182	-	1	NA	NA	NA	-159	NM_001114399	67785	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0.090000	0.686567	
mm_11644.1	chr2	34958253	34958453	+	1	NA	NA	NA	3419	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.020000	0.502488	
mm_24364.1	chr3	90080392	90080592	+	1	NA	NA	NA	971	NM_001293749	59069	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0.055000	0.601990	
mm_159163.1	chr2	91653110	91653310	+	1	NA	NA	NA	2	NM_146124	228359	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	0.015000	0.512438	35(TTTTTTATGGGG,+,0.00)
mm_104155.1	chr11	87121964	87122164	-	1	NA	NA	NA	-5011	NM_197987	68729	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.035000	0.472637	
mm_46447.1	chr5	105109973	105110173	-	1	NA	NA	NA	219	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.000000	0.527363	
mm_49564.1	chr6	30610905	30611105	+	1	NA	NA	NA	-5	NM_144537	74649	Mm.159276	NM_144537	ENSMUSG00000029788	Cpa5	4930430M09Rik	carboxypeptidase A5	protein-coding	0.030000	0.437811	
mm_80284.1	chr9	73044774	73044974	+	1	NA	NA	NA	64	NM_001301230	11891	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	0.080000	0.626866	
mm_49817.1	chr6	37212990	37213190	+	1	NA	NA	NA	86886	NM_001081206	320127	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.015000	0.572139	
mm_164631.1	chr17	33629283	33629483	+	1	NA	NA	NA	291	NM_026712	328801	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	0.050000	0.592040	
mm_136798.1	chr17	12119271	12119471	+	1	NA	NA	NA	87	NM_026644	68262	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.030000	0.542289	
mm_70286.1	chr8	3648534	3648734	+	1	NA	NA	NA	-7136	NM_001204959	57264	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0.005000	0.412935	-59(CCTCTTATGGAG,+,0.00)
mm_22416.1	chr2	181496893	181497093	-	1	NA	NA	NA	-149	NM_001291203	66314	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	0.030000	0.502488	
mm_51648.1	chr6	86028709	86028909	+	1	NA	NA	NA	128	NM_001271860	11519	Mm.104155	NM_013458	ENSMUSG00000030000	Add2	2900072M03Rik|add97	adducin 2 (beta)	protein-coding	0.085000	0.671642	
mm_73530.1	chr8	108612168	108612368	+	1	NA	NA	NA	-27591	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.015000	0.522388	
mm_87939.1	chr10	62892381	62892581	+	1	NA	NA	NA	-12467	NM_001253857	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.015000	0.487562	-31(TTCTTTATAAAG,-,0.00),-29(CTTTATAAAGCC,+,0.00)
mm_107922.1	chr12	71063168	71063368	+	1	NA	NA	NA	47301	NM_001081195	238247	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|MmRBBP1|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.035000	0.442786	-58(AGCTCTAAAAGA,-,0.00)
mm_31110.1	chr4	42921768	42921968	+	1	NA	NA	NA	4617	NM_172690	230085	Mm.240965	NM_172690	ENSMUSG00000036062	Phf24	GINIP|N28178	PHD finger protein 24	protein-coding	0.005000	0.412935	
mm_142506.1	chr17	46096563	46096763	-	1	NA	NA	NA	-14341	NM_026768	68565	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	0.020000	0.567164	
mm_93134.1	chr10	92162601	92162801	-	1	NA	NA	NA	2477	NR_028262	110333	Mm.429764	NR_028262		Rmst	100041799|AI853140|C230053E11Rik|D930049J19Rik|Dmt2|Gm3515|M2|Ncrms	rhabdomyosarcoma 2 associated transcript (non-coding RNA)	ncRNA	0.065000	0.562189	
mm_13782.1	chr2	118779717	118779917	+	1	NA	NA	NA	98	NM_170593	214240	Mm.221499	NM_170593	ENSMUSG00000040035	Disp2	AI840597|B230210L08Rik|DispB|mKIAA1742	dispatched RND tramsporter family member 2	protein-coding	0.065000	0.636816	
mm_143413.1	chr17	70834467	70834667	-	1	NA	NA	NA	12210	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.060000	0.616915	
mm_148857.1	chr19	6398048	6398248	+	1	NA	NA	NA	-2435	NM_011242	19395	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.030000	0.562189	
mm_172438.1	chr7	29921794	29921994	-	1	NA	NA	NA	13377	NM_001243908	73729	Mm.333743	NM_001243908	ENSMUSG00000099689	Zfp383	1110003H10Rik	zinc finger protein 383	protein-coding	0.005000	0.467662	
mm_56215.1	chr6	89362509	89362709	-	1	NA	NA	NA	4	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.185000	0.840796	
mm_136547.1	chr16	97965105	97965305	-	1	NA	NA	NA	-2583	NM_001320385	114565	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0.005000	0.328358	-33(TGGTATAAAAAG,-,0.00)
mm_16615.1	chr2	5410839	5411039	-	1	NA	NA	NA	31549	NR_030601	100124465		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.005000	0.278607	
mm_145306.1	chr18	53463665	53463865	+	1	NA	NA	NA	-781	NM_001033281	225518	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	0.115000	0.661692	
mm_151720.1	chr19	4802515	4802715	-	1	NA	NA	NA	-8606	NM_001290123	19653	Mm.426069	NM_009032	ENSMUSG00000094936	Rbm4	4921506I22Rik|Lark1|Mlark|Rbm4a|lark	RNA binding motif protein 4	protein-coding	0.060000	0.641791	
mm_134535.1	chr16	19673153	19673353	-	1	NA	NA	NA	33112	NM_177356	239739	Mm.258059	NM_177356	ENSMUSG00000041247	Lamp3	1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403	lysosomal-associated membrane protein 3	protein-coding	0.000000	0.427861	
mm_152828.1	chr19	23140870	23141070	-	1	NA	NA	NA	-256	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.145000	0.716418	-34(ACATTTAAAAGG,-,0.00)
mm_135838.1	chr16	58524072	58524272	-	1	NA	NA	NA	-860	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.020000	0.467662	
mm_167905.1	chrX	78059239	78059439	+	1	NA	NA	NA	32035	NM_008754	18249	Mm.430771	NM_008754	ENSMUSG00000067684	Obp1a	OBP-1a|OBP5	odorant binding protein IA	protein-coding	0.010000	0.388060	
mm_32741.1	chr4	116636413	116636613	+	1	NA	NA	NA	-8562	NM_016777	50927	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.015000	0.482587	
mm_35660.1	chr4	43562067	43562267	-	1	NA	NA	NA	416	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.110000	0.741294	
mm_141474.1	chr17	31039623	31039823	-	1	NA	NA	NA	-17971	NM_009593	11307	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding	0.015000	0.497512	
mm_40693.1	chr5	65767312	65767512	+	1	NA	NA	NA	3891	NM_001024917	333789	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.005000	0.442786	
mm_106836.1	chr12	8006288	8006488	+	1	NA	NA	NA	28711	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.020000	0.477612	
mm_70400.1	chr8	11312445	11312645	+	1	NA	NA	NA	-260	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.095000	0.726368	
mm_127271.1	chr15	99723745	99723945	+	1	NA	NA	NA	-1773	NM_183256	66379	Mm.5265	NM_183256	ENSMUSG00000023020	Cox14	2310016M24Rik|AA959804	cytochrome c oxidase assembly protein 14	protein-coding	0.010000	0.522388	
mm_146874.1	chr18	25478898	25479098	-	1	NA	NA	NA	274985	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.015000	0.313433	-46(CGCTTTTAAAAC,-,0.00),-45(GCTTTTAAAACA,+,0.00),-44(CTTTTAAAACAG,+,0.00)
mm_30245.1	chr3	146521313	146521513	-	1	NA	NA	NA	10	NM_027332	70285	Mm.28128	NM_027332	ENSMUSG00000028187	Rpf1	2210420E24Rik|2310066N05Rik|Bxdc5	ribosome production factor 1 homolog	protein-coding	0.075000	0.547264	
mm_155686.1	chrX	93806909	93807109	+	1	NA	NA	NA	25086	NM_145630	236900	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	0.020000	0.527363	-34(GGTTATAAAAAG,-,0.00)
mm_84487.1	chr9	66845697	66845897	-	1	NA	NA	NA	-11091	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.015000	0.358209	
mm_41847.1	chr5	104436442	104436642	+	1	NA	NA	NA	350	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.025000	0.422886	-12(CTGTTTTAAAGG,-,0.00)
mm_131901.1	chr16	23262931	23263131	+	1	NA	NA	NA	-27439	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.010000	0.402985	-23(GTCTTTATATAG,-,0.00),-21(CTTTATATAGTC,+,0.00)
mm_71206.1	chr8	40890230	40890430	+	1	NA	NA	NA	27963	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.005000	0.447761	24(CCTCTTATGGGG,+,0.00)
mm_104586.1	chr11	96988387	96988587	-	1	NA	NA	NA	-10799	NM_001080964	78912	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.030000	0.587065	
mm_116975.1	chr13	56178894	56179094	-	1	NA	NA	NA	-109	NM_001168615	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.010000	0.552239	
mm_154740.1	chrX	10276553	10276753	+	1	NA	NA	NA	24348	NM_008769	18416	Mm.2611	NM_008769	ENSMUSG00000031173	Otc	AI265390|Sf|spf	ornithine transcarbamylase	protein-coding	0.015000	0.402985	
mm_82969.1	chr9	35777846	35778046	-	1	NA	NA	NA	163	NM_001167673	100312986	Mm.437659	NM_001167673	ENSMUSG00000090738	Gm17727	Pate-e|Pate7	predicted gene, 17727	protein-coding	0.010000	0.407960	
mm_2867.1	chr1	131744087	131744287	+	1	NA	NA	NA	165	NM_177243	320718	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	0.020000	0.611940	
mm_135228.1	chr16	36828147	36828347	-	1	NA	NA	NA	12	NM_001113401	106389	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0.075000	0.681592	
mm_63998.1	chr7	140125589	140125789	+	1	NA	NA	NA	4	NM_153783	212503	Mm.486735	NM_153783	ENSMUSG00000025464	Paox	2410012F02Rik|AI118225|Pao	polyamine oxidase (exo-N4-amino)	protein-coding	0.085000	0.706468	
mm_164505.1	chr16	93002653	93002853	+	1	NA	NA	NA	-176679	NM_001111022	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.010000	0.522388	
mm_39011.1	chr4	152117534	152117734	-	1	NA	NA	NA	1291	NM_033042	85030	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0.020000	0.567164	
mm_30670.1	chr4	11156332	11156532	+	1	NA	NA	NA	-9	NM_001199105	60599	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.120000	0.756219	
mm_128828.1	chr15	67176669	67176869	-	1	NA	NA	NA	113	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.080000	0.641791	
mm_82240.1	chr9	3260774	3260974	-	1	NA	NA	NA	-61061	NR_027988	114673	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0.005000	0.442786	-65(GAATCTTAAAGG,-,0.00)
mm_15255.1	chr2	154891711	154891911	+	1	NA	NA	NA	1095	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.010000	0.432836	
mm_42055.1	chr5	108669254	108669454	+	1	NA	NA	NA	5442	NM_001310692	231583	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0.090000	0.616915	-36(CCGCCTAAAAAG,-,0.00)
mm_75021.1	chr8	31167720	31167920	-	1	NA	NA	NA	904	NM_026453	67920	Mm.289818	NM_026453	ENSMUSG00000031578	Mak16	2600016B03Rik|AI314911|Rbm13	MAK16 homolog	protein-coding	0.025000	0.437811	53(CCTTTTAGAGAT,+,0.00)
mm_24965.1	chr3	96727452	96727652	+	1	NA	NA	NA	-59	NM_026406	67845	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.110000	0.726368	
mm_141154.1	chr17	26506453	26506653	-	1	NA	NA	NA	1919	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.030000	0.557214	
mm_92212.1	chr10	68225640	68225840	-	1	NA	NA	NA	52986	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.015000	0.502488	
mm_10531.1	chr2	16408434	16408634	+	1	NA	NA	NA	52230	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.005000	0.328358	
mm_23365.1	chr3	55247027	55247227	+	1	NA	NA	NA	4601	NM_001195538	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.040000	0.522388	
mm_49675.1	chr6	31619872	31620072	+	1	NA	NA	NA	-56035	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	0.035000	0.482587	
mm_30171.1	chr3	144202223	144202423	-	1	NA	NA	NA	9	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.075000	0.636816	
mm_15348.1	chr2	156144124	156144324	+	1	NA	NA	NA	-9	NM_025946	67067	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	0.125000	0.686567	
mm_129533.1	chr15	79323242	79323442	-	1	NA	NA	NA	5029	NM_016915	53357	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0.005000	0.447761	
mm_78419.1	chr9	31030640	31030840	+	1	NA	NA	NA	96	NM_172765	235132	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.125000	0.776119	
mm_48661.1	chr5	145879957	145880157	-	1	NA	NA	NA	-203	NM_007818	13112	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	0.005000	0.402985	
mm_41452.1	chr5	90905421	90905621	+	1	NA	NA	NA	1622	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.000000	0.313433	-90(TCTTAAAAGGTC,+,0.00)
mm_3166.1	chr1	135363763	135363963	+	1	NA	NA	NA	11200	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.030000	0.577114	-72(GCGTTTTAAAGA,-,0.00)
mm_164946.1	chr19	4231535	4231735	-	1	NA	NA	NA	-258	NM_027196	69745	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0.025000	0.512438	
mm_142202.1	chr17	36970515	36970715	-	1	NA	NA	NA	10622	NM_029747	76797	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding	0.020000	0.542289	
mm_57913.1	chr6	133767312	133767512	-	1	NA	NA	NA	-4	NR_111985	545886	Mm.449716	NM_001177652	ENSMUSG00000108106	Gm5886	EG545886|smarp	predicted gene 5886	protein-coding	0.020000	0.482587	-35(GCTTTTATAAAG,+,0.00),-35(GCTTTTATAAAG,-,0.00),-33(TTTTATAAAGAG,+,0.00)
mm_22906.1	chr3	30864219	30864419	+	1	NA	NA	NA	8369	NM_001286994	71862	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.010000	0.507463	-32(CTGCATAAAAGA,-,0.00)
mm_105296.1	chr11	102480681	102480881	-	1	NA	NA	NA	-10898	NM_010575	16399	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0.000000	0.507463	
mm_70021.1	chr7	142575686	142575886	-	1	NA	NA	NA	1361	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.035000	0.502488	
mm_15678.1	chr2	163547244	163547444	+	1	NA	NA	NA	189	NM_008261	15378	Mm.202383	NM_008261	ENSMUSG00000017950	Hnf4a	HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14	hepatic nuclear factor 4, alpha	protein-coding	0.030000	0.611940	
mm_405.1	chr1	34187702	34187902	+	1	NA	NA	NA	27472	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.020000	0.368159	
mm_8330.1	chr1	149961584	149961784	-	1	NA	NA	NA	-394	NM_008869	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.000000	0.402985	-88(ACCTTTTAAAGA,-,0.00),-87(CCTTTTAAAGAC,+,0.00)
mm_167342.1	chr8	77689034	77689234	-	1	NA	NA	NA	35318	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	0.020000	0.502488	
mm_67525.1	chr7	80993468	80993668	-	1	NA	NA	NA	-116	NM_178707	233410	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	8430405N24|A730014M16Rik|Znf592|mKIAA0211	zinc finger protein 592	protein-coding	0.135000	0.840796	
mm_107871.1	chr12	69907839	69908039	+	1	NA	NA	NA	-14776	NM_201519	399510	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	0.050000	0.606965	
mm_81105.1	chr9	106448572	106448772	+	1	NA	NA	NA	32	NM_029631	76491	Mm.335427	NM_029631	ENSMUSG00000042073	Abhd14b	1810013B01Rik	abhydrolase domain containing 14b	protein-coding	0.045000	0.592040	
mm_71315.1	chr8	43321114	43321314	+	1	NA	NA	NA	-14205	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.010000	0.437811	
mm_104117.1	chr11	86738842	86739042	-	1	NA	NA	NA	18550	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.000000	0.373134	-25(TTTTTTAAAGGA,+,0.00)
mm_146925.1	chr18	31949602	31949802	-	1	NA	NA	NA	-66	NM_001025381	574402	Mm.391108	NM_001025381	ENSMUSG00000052229	Gpr17	AI853548	G protein-coupled receptor 17	protein-coding	0.015000	0.567164	
mm_106821.1	chr12	7985190	7985390	+	1	NA	NA	NA	7613	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.487562	
mm_69990.1	chr7	142383358	142383558	-	1	NA	NA	NA	4412	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.030000	0.537313	
mm_20779.1	chr2	143988364	143988564	-	1	NA	NA	NA	22799	NM_133626	81910	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.000000	0.517413	
mm_101267.1	chr11	21239439	21239639	-	1	NA	NA	NA	507	NM_001290628	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.090000	0.711443	
mm_77848.1	chr9	5303457	5303657	+	1	NA	NA	NA	5040	NM_009807	12362	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.000000	0.412935	
mm_67504.1	chr7	80779273	80779473	-	1	NA	NA	NA	23958	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.025000	0.507463	
mm_159778.1	chr5	104859900	104860100	-	1	NA	NA	NA	68	NM_001039231	626391	Mm.385405	NM_001039231	ENSMUSG00000072774	Zfp951	C230055K05Rik	zinc finger protein 951	protein-coding	0.030000	0.487562	
mm_97958.1	chr11	83731246	83731446	+	1	NA	NA	NA	-15594	NM_183249	66107	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.005000	0.442786	-35(CCCTATAAAAAG,-,0.00)
mm_32618.1	chr4	114405944	114406144	+	1	NA	NA	NA	-680	NM_001085549	666048	Mm.331779	NM_001085549	ENSMUSG00000070867	Trabd2b	Gm12824|Hkat|OTTMUSG00000008561	TraB domain containing 2B	protein-coding	0.170000	0.805970	
mm_32444.1	chr4	107291747	107291947	+	1	NA	NA	NA	15321	NM_007860	13370	Mm.148342	NM_007860	ENSMUSG00000034785	Dio1	5DI|D1|ITDI1|TXDI1	deiodinase, iodothyronine, type I	protein-coding	0.005000	0.437811	
mm_94869.1	chr11	24078180	24078380	+	1	NA	NA	NA	224	NM_001159289	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.080000	0.512438	
mm_161428.1	chr15	44747715	44747915	-	1	NA	NA	NA	857	NM_001285840	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding	0.010000	0.537313	
mm_40746.1	chr5	66745331	66745531	+	1	NA	NA	NA	-409	NM_001001980	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.020000	0.562189	
mm_100224.1	chr11	117115060	117115260	+	1	NA	NA	NA	-12	NR_029459	74136	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.130000	0.786070	
mm_152322.1	chr19	9936617	9936817	-	1	NA	NA	NA	-37184	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.015000	0.432836	
mm_152277.1	chr19	8838022	8838222	-	1	NA	NA	NA	655	NM_001136064	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.040000	0.552239	
mm_139705.1	chr17	57453418	57453618	+	1	NA	NA	NA	91796	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.005000	0.313433	
mm_142090.1	chr17	35833959	35834159	-	1	NA	NA	NA	4242	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.010000	0.467662	
mm_104405.1	chr11	94521394	94521594	-	1	NA	NA	NA	8	NM_170671	104601	Mm.84725	NM_170671	ENSMUSG00000039110	Mycbpap	4932408B01Rik|AMAP-1|AW125474	MYCBP associated protein	protein-coding	0.075000	0.592040	
mm_109174.1	chr12	108410479	108410679	+	1	NA	NA	NA	-54	NM_001043336	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.005000	0.542289	
mm_142984.1	chr17	56276662	56276862	-	1	NA	NA	NA	5	NM_174989	106759	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.040000	0.631841	
mm_114127.1	chr13	55210841	55211041	+	1	NA	NA	NA	1159	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.065000	0.671642	
mm_166702.1	chr6	115687763	115687963	+	1	NA	NA	NA	-11228	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.005000	0.472637	
mm_33430.1	chr4	130055182	130055382	+	1	NA	NA	NA	7442	NM_028266	107581	Mm.41860	NM_028266	ENSMUSG00000040690	Col16a1	2700007F12Rik|A530052M23Rik|AI838662|CA1F	collagen, type XVI, alpha 1	protein-coding	0.025000	0.592040	
mm_168294.1	chr11	104442697	104442897	-	1	NA	NA	NA	-506	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.050000	0.616915	
mm_62021.1	chr7	91542980	91543180	+	1	NA	NA	NA	452294	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.050000	0.562189	
mm_104267.1	chr11	88996417	88996617	-	1	NA	NA	NA	-2886	NM_009546	217069	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.030000	0.462687	
mm_108740.1	chr12	88722780	88722980	+	1	NA	NA	NA	-71624	NM_001198587	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.030000	0.606965	-81(CTCTTTAAATGC,-,0.00)
mm_35994.1	chr4	55532375	55532575	-	1	NA	NA	NA	0	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.165000	0.791045	
mm_109792.1	chr12	3255742	3255942	-	1	NA	NA	NA	20051	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.015000	0.368159	
mm_61662.1	chr7	80774417	80774617	+	1	NA	NA	NA	28814	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.030000	0.492537	
mm_97989.1	chr11	83955894	83956094	+	1	NA	NA	NA	-8437	NM_194341	217030	Mm.82680	NM_194341	ENSMUSG00000034940	Synrg	Ap1gbp1|SYNG	synergin, gamma	protein-coding	0.005000	0.422886	-73(CCATTTAAACAA,+,0.00)
mm_125629.1	chr15	61989388	61989588	+	1	NA	NA	NA	4147	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.035000	0.616915	
mm_43468.1	chr5	136693528	136693728	+	1	NA	NA	NA	-48	NM_001303021	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.025000	0.552239	
mm_72103.1	chr8	71597608	71597808	+	1	NA	NA	NA	62	NM_001166213	100037278	Mm.482159	NM_001166213	ENSMUSG00000043243	Fam129c	Bcnp1	family with sequence similarity 129, member C	protein-coding	0.005000	0.631841	
mm_135250.1	chr16	37539689	37539889	-	1	NA	NA	NA	-20	NM_028812	74197	Mm.287795	NM_028812	ENSMUSG00000022828	Gtf2e1	2610024P03Rik|56kDa|AI303800|FE|TFIIE-A	general transcription factor II E, polypeptide 1 (alpha subunit)	protein-coding	0.085000	0.592040	
mm_165164.1	chr2	25469917	25470117	-	1	NA	NA	NA	-268	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.015000	0.582090	
mm_136940.1	chr17	14249791	14249991	+	1	NA	NA	NA	-29615	NM_022315	64074	Mm.30162	NM_022315	ENSMUSG00000023886	Smoc2	1700056C05Rik|5430426J21Rik|Smoc2l	SPARC related modular calcium binding 2	protein-coding	0.010000	0.557214	
mm_108155.1	chr12	76324821	76325021	+	1	NA	NA	NA	30	NM_001101471	238276	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.110000	0.696517	
mm_25150.1	chr3	102775008	102775208	+	1	NA	NA	NA	7606	NM_009432	22094	Mm.110730	NM_009432	ENSMUSG00000027857	Tshb	-	thyroid stimulating hormone, beta subunit	protein-coding	0.015000	0.447761	
mm_9795.1	chr1	181842210	181842410	-	1	NA	NA	NA	91	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.165000	0.791045	
mm_43835.1	chr5	142972368	142972568	+	1	NA	NA	NA	12113	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.025000	0.641791	
mm_85799.1	chr9	110117242	110117442	-	1	NA	NA	NA	274	NM_001252682	72831	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	0.085000	0.636816	
mm_144374.1	chr18	20557962	20558162	+	1	NA	NA	NA	-12	NM_007883	13511	Mm.345891	NM_007883	ENSMUSG00000044393	Dsg2	AA408168|D18Ertd293e	desmoglein 2	protein-coding	0.065000	0.681592	
mm_82047.1	chr9	122351680	122351880	+	1	NA	NA	NA	164	NM_026179	67469	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0.140000	0.731343	-82(CGGTCTTAAGGG,-,0.00)
mm_69985.1	chr7	142380830	142381030	-	1	NA	NA	NA	6940	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.015000	0.472637	
mm_81115.1	chr9	106453854	106454054	+	1	NA	NA	NA	116	NM_021567	59092	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	0.115000	0.716418	
mm_73499.1	chr8	107205235	107205435	+	1	NA	NA	NA	-50829	NR_039557	100628577		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.015000	0.582090	
mm_70284.1	chr8	3631039	3631239	+	1	NA	NA	NA	-21	NM_011503	20911	Mm.7247	NM_011503	ENSMUSG00000004626	Stxbp2	C79054|Munc-18-2|Munc-18b|Munc18b|Sxtbp2|Sxtp2|Unc18-2|Unc18b|muSec1	syntaxin binding protein 2	protein-coding	0.090000	0.686567	
mm_129905.1	chr15	84054985	84055185	-	1	NA	NA	NA	10264	NM_029946	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	0.025000	0.512438	
mm_56852.1	chr6	118138958	118139158	-	1	NA	NA	NA	82	NM_030165	78752	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0.160000	0.781095	
mm_10006.1	chr1	191575443	191575643	-	1	NA	NA	NA	1	NM_001305233	76843	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	0.115000	0.666667	
mm_135139.1	chr16	35853502	35853702	-	1	NA	NA	NA	17780	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.010000	0.497512	
mm_87833.1	chr10	60371719	60371919	+	1	NA	NA	NA	24968	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.005000	0.532338	
mm_99306.1	chr11	101376527	101376727	+	1	NA	NA	NA	8911	NM_008061	14377	Mm.18064	NM_008061	ENSMUSG00000078650	G6pc	AW107337|G6Pase|G6pt|Glc-6-Pase	glucose-6-phosphatase, catalytic	protein-coding	0.020000	0.547264	
mm_100381.1	chr11	119300095	119300295	+	1	NA	NA	NA	-152	NM_138669	192170	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	0.125000	0.681592	
mm_33625.1	chr4	132768258	132768458	+	1	NA	NA	NA	-2	NM_011284	19891	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	0.060000	0.577114	
mm_53530.1	chr6	136554967	136555167	+	1	NA	NA	NA	36216	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.005000	0.437811	
mm_144543.1	chr18	27745517	27745717	+	1	NA	NA	NA	-814547	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.005000	0.308458	
mm_64460.1	chr7	142660561	142660761	+	1	NA	NA	NA	610	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.090000	0.661692	
mm_56144.1	chr6	87809703	87809903	-	1	NA	NA	NA	-46	NM_133717	69834	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0.005000	0.522388	
mm_35958.1	chr4	53130898	53131098	-	1	NA	NA	NA	28897	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.005000	0.417910	-47(GTTTTAAAAGAG,+,0.00)
mm_22150.1	chr2	172401017	172401217	-	1	NA	NA	NA	7323	NM_001276423	320664	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.030000	0.467662	
mm_88143.1	chr10	69533513	69533713	+	1	NA	NA	NA	-95	NM_170729	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.025000	0.527363	
mm_154461.1	chrM	3059	3259	-	1	NA	NA	NA	NA	NA									0.015000	0.353234	
mm_61686.1	chr7	81004932	81005132	+	1	NA	NA	NA	11348	NM_178707	233410	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	8430405N24|A730014M16Rik|Znf592|mKIAA0211	zinc finger protein 592	protein-coding	0.010000	0.507463	
mm_61683.1	chr7	81004741	81004941	+	1	NA	NA	NA	11157	NM_178707	233410	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	8430405N24|A730014M16Rik|Znf592|mKIAA0211	zinc finger protein 592	protein-coding	0.005000	0.432836	
mm_108650.1	chr12	86082479	86082679	+	1	NA	NA	NA	18	NM_001199843	76411	Mm.292345	NM_029601	ENSMUSG00000007867	Ift43	1700019E19Rik|R75064	intraflagellar transport 43	protein-coding	0.095000	0.621891	
mm_29656.1	chr3	122512924	122513124	-	1	NA	NA	NA	28657	NR_106117	102465764		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.045000	0.552239	
mm_105975.1	chr11	115535734	115535934	-	1	NA	NA	NA	396	NM_133354	170930	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	0.200000	0.845771	
mm_39090.1	chr4	154636875	154637075	-	1	NA	NA	NA	-102	NM_027504	70673	Mm.257785	NM_027504	ENSMUSG00000039410	Prdm16	5730557K01Rik|csp1|mel1	PR domain containing 16	protein-coding	0.085000	0.616915	-90(TCTTAAAGGGCC,+,0.00),-67(GCGCTGAAAAGG,-,0.00)
mm_60691.1	chr7	45169726	45169926	+	1	NA	NA	NA	-3477	NR_106022	102465638		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0.010000	0.482587	
mm_46010.1	chr5	90786565	90786765	-	1	NA	NA	NA	564	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.010000	0.467662	
mm_26379.1	chr3	142568194	142568394	+	1	NA	NA	NA	7798	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.010000	0.378109	
mm_40864.1	chr5	73651285	73651485	+	1	NA	NA	NA	5	NM_178387	73472	Mm.87067	NM_178387	ENSMUSG00000029155	Spata18	1700067I02Rik	spermatogenesis associated 18	protein-coding	0.095000	0.671642	-35(GGGTATTTATGG,-,0.00),-33(GTATTTATGGCC,+,0.00)
mm_8858.1	chr1	162715603	162715803	-	1	NA	NA	NA	24853	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.025000	0.432836	-84(GTTTTAATACTC,+,0.00)
mm_172688.1	chr8	57512525	57512725	+	1	NA	NA	NA	782	NM_008252	97165	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.115000	0.651741	
mm_85806.1	chr9	110304989	110305189	-	1	NA	NA	NA	-103	NM_001081381	72341	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	0.065000	0.592040	
mm_99830.1	chr11	108921577	108921777	+	1	NA	NA	NA	1328	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.095000	0.701493	
mm_46235.1	chr5	99217899	99218099	-	1	NA	NA	NA	34928	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.010000	0.442786	
mm_19023.1	chr2	76954560	76954760	-	1	NA	NA	NA	27887	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.030000	0.437811	
mm_1358.1	chr1	66321985	66322185	+	1	NA	NA	NA	361	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.030000	0.497512	
mm_23620.1	chr3	65703460	65703660	+	1	NA	NA	NA	37332	NM_001166659	624866	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	0.005000	0.278607	
mm_89344.1	chr10	87937629	87937829	+	1	NA	NA	NA	-28942	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.000000	0.412935	55(TTCCTTTAAAGG,-,0.00),56(TCCTTTAAAGGA,+,0.00),56(TCCTTTAAAGGA,-,0.00),57(CCTTTAAAGGAT,+,0.00)
mm_56672.1	chr6	113660438	113660638	-	1	NA	NA	NA	22071	NM_001113553	108960	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.020000	0.472637	-32(GAGTATTTAAAG,-,0.00),-30(GTATTTAAAGAC,+,0.00)
mm_3574.1	chr1	150625196	150625396	+	1	NA	NA	NA	-159131	NM_001110146	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.010000	0.452736	
mm_95483.1	chr11	51289646	51289846	+	1	NA	NA	NA	-174	NM_153393	237759	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	0.060000	0.592040	
mm_156335.1	chrX	139008967	139009167	+	1	NA	NA	NA	76169	NM_177920	331535	Mm.211704	NM_177920	ENSMUSG00000031271	Serpina7	C730040N12Rik|Tbg	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7	protein-coding	0.000000	0.273632	
mm_124965.1	chr15	16824903	16825103	+	1	NA	NA	NA	46902	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.000000	0.253731	
mm_23071.1	chr3	36151019	36151219	+	1	NA	NA	NA	39	NM_001101478	241944	Mm.260056	NM_001101478	ENSMUSG00000033883	D3Ertd254e	-	DNA segment, Chr 3, ERATO Doi 254, expressed	protein-coding	0.055000	0.611940	
mm_153764.1	chr19	45591805	45592005	-	1	NA	NA	NA	31290	NM_172639	226162	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	5330431N19Rik|Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.010000	0.482587	
mm_99289.1	chr11	101322772	101322972	+	1	NA	NA	NA	-2191	NM_178932	237940	Mm.302277	NM_178932	ENSMUSG00000078651	Aoc2	RAO	amine oxidase, copper containing 2 (retina-specific)	protein-coding	0.035000	0.522388	
mm_170089.1	chr17	35935868	35936068	-	1	NA	NA	NA	-11186	NR_028278	667766	Mm.29385	NR_028278		Gm8801	-	protein phosphatase 1, regulatory subunit 10 pseudogene	pseudo	0.055000	0.472637	
mm_8237.1	chr1	138175825	138176025	-	1	NA	NA	NA	-620	NM_001268286	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.432836	
mm_127764.1	chr15	103562746	103562946	+	1	NA	NA	NA	2235	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.015000	0.467662	
mm_58555.1	chr7	4740748	4740948	+	1	NA	NA	NA	721	NM_001115018	232811	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	0.010000	0.532338	
mm_106385.1	chr11	118513160	118513360	-	1	NA	NA	NA	36300	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.030000	0.641791	
mm_170809.1	chr2	175965226	175965426	+	1	NA	NA	NA	-34226	NM_001177406	100303732	Mm.484983	NM_001177404	ENSMUSG00000095199	Zfp967	Gm14431|OTTMUSG00000016608	zinc finger protein 967	protein-coding	0.015000	0.497512	
mm_26261.1	chr3	142500526	142500726	+	1	NA	NA	NA	3692	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.010000	0.527363	
mm_69306.1	chr7	128393551	128393751	-	1	NA	NA	NA	24521	NM_026418	67865	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.005000	0.492537	
mm_50377.1	chr6	48684478	48684678	+	1	NA	NA	NA	0	NM_001243200	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.010000	0.482587	
mm_106748.1	chr12	3959929	3960129	+	1	NA	NA	NA	5084	NM_001278583	18976	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	0.090000	0.661692	
mm_62692.1	chr7	110062014	110062214	+	1	NA	NA	NA	412	NM_009281	20841	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0.085000	0.736318	
mm_54339.1	chr6	30669217	30669417	-	1	NA	NA	NA	24432	NM_031998	83922	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	0.020000	0.477612	
mm_149938.1	chr19	27217016	27217216	+	1	NA	NA	NA	96	NM_001161420	22359	Mm.4141	NM_013703	ENSMUSG00000024924	Vldlr	AA408956|AI451093|AW047288	very low density lipoprotein receptor	protein-coding	0.120000	0.766169	
mm_59490.1	chr7	27499223	27499423	+	1	NA	NA	NA	-1	NM_198048	19153	Mm.10119	NM_019412	ENSMUSG00000053198	Prx	L-Periaxin	periaxin	protein-coding	0.005000	0.587065	
mm_131041.1	chr16	3884628	3884828	+	1	NA	NA	NA	109	NM_001290689	74763	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|Nat15	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0.125000	0.746269	
mm_22223.1	chr2	174427870	174428070	-	1	NA	NA	NA	11069	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.015000	0.557214	
mm_44123.1	chr5	149636333	149636533	+	1	NA	NA	NA	-97	NM_001347534	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.060000	0.616915	
mm_142370.1	chr17	44643478	44643678	-	1	NA	NA	NA	92598	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.030000	0.497512	
mm_9222.1	chr1	171234514	171234714	-	1	NA	NA	NA	-265	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.010000	0.457711	-35(GGGTATATAAAG,-,0.00)
mm_166305.1	chr5	105702620	105702820	-	1	NA	NA	NA	1910	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.015000	0.482587	
mm_170324.1	chr18	4199235	4199435	-	1	NA	NA	NA	33503	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.050000	0.512438	-21(CTCTATATAAAG,-,0.00)
mm_52695.1	chr6	118880070	118880270	+	1	NA	NA	NA	12	NR_046053	74363	Mm.399403	NR_046053		4931430N09Rik	-	RIKEN cDNA 4931430N09 gene	ncRNA	0.010000	0.497512	
mm_152899.1	chr19	25002823	25003023	-	1	NA	NA	NA	3394	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.000000	0.412935	
mm_102129.1	chr11	53430325	53430525	-	1	NA	NA	NA	406	NM_025352	22272	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	0.070000	0.577114	
mm_152690.1	chr19	16780785	16780985	-	1	NA	NA	NA	48	NM_173028	271564	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.145000	0.746269	
mm_24220.1	chr3	88685333	88685533	+	1	NA	NA	NA	-361	NM_028814	74200	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	0.045000	0.482587	
mm_133729.1	chr16	93788601	93788801	+	1	NA	NA	NA	-43420	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.010000	0.517413	
mm_4000.1	chr1	164631649	164631849	+	1	NA	NA	NA	-164983	NM_019759	56429	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	0.005000	0.477612	
mm_127620.1	chr15	102460504	102460704	+	1	NA	NA	NA	1434	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.035000	0.557214	
mm_27071.1	chr3	28264142	28264342	-	1	NA	NA	NA	1028	NM_001163009	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.020000	0.537313	
mm_16201.1	chr2	173022274	173022474	+	1	NA	NA	NA	472	NM_019547	56190	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.105000	0.691542	
mm_139041.1	chr17	46227706	46227906	+	1	NA	NA	NA	-3725	NR_030466	751553		NR_030466	ENSMUSG00000076141	Mir693	Mirn693|mir-693|mmu-mir-693	microRNA 693	ncRNA	0.025000	0.502488	
mm_44229.1	chr5	5119920	5120120	-	1	NA	NA	NA	146048	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.005000	0.293532	-66(TCTTTTATATCG,+,0.00)
mm_160811.1	chr11	20741434	20741634	-	1	NA	NA	NA	22	NM_001290545	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.120000	0.726368	
mm_142270.1	chr17	39846803	39847003	-	1	NA	NA	NA	3906	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.050000	0.517413	
mm_142152.1	chr17	36030537	36030737	-	1	NA	NA	NA	2064	NM_010398	15040	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	0.000000	0.497512	
mm_65100.1	chr7	19302847	19303047	-	1	NA	NA	NA	7098	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.020000	0.442786	
mm_56145.1	chr6	87811560	87811760	-	1	NA	NA	NA	119	NM_001039394	69834	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0.160000	0.786070	
mm_151088.1	chr19	47705695	47705895	+	1	NA	NA	NA	-13753	NM_001290825	12821	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	0.005000	0.447761	
mm_103916.1	chr11	83588822	83589022	-	1	NA	NA	NA	4165	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.015000	0.512438	-67(CCTTTACTAGAG,+,0.00)
mm_12873.1	chr2	84525373	84525573	+	1	NA	NA	NA	-18600	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	0.015000	0.482587	
mm_10806.1	chr2	24349771	24349971	+	1	NA	NA	NA	4500	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.000000	0.467662	
mm_141402.1	chr17	29332284	29332484	-	1	NA	NA	NA	13502	NM_023734	74116	Mm.30950	NM_023734	ENSMUSG00000024011	Pi16	1200009H11Rik|Cripi|PI-16	peptidase inhibitor 16	protein-coding	0.015000	0.567164	
mm_154386.1	chrM	11582	11782	+	1	NA	NA	NA	NA	NA									0.000000	0.313433	-11(ACTTTTATAGGA,+,0.00)
mm_104734.1	chr11	98329521	98329721	-	1	NA	NA	NA	24	NM_010895	18013	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0.085000	0.646766	
mm_100593.1	chr11	120958309	120958509	+	1	NA	NA	NA	9342	NM_001038654	80879	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0.015000	0.601990	
mm_136049.1	chr16	78576507	78576707	-	1	NA	NA	NA	81	NM_001252438	67102	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.155000	0.721393	
mm_43250.1	chr5	130187096	130187296	+	1	NA	NA	NA	16	NM_019983	56715	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.010000	0.388060	
mm_135361.1	chr16	43980165	43980365	-	1	NA	NA	NA	-1215	NM_001007460	332175	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	0.015000	0.432836	
mm_63505.1	chr7	127841732	127841932	+	1	NA	NA	NA	24	NM_009294	20909	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.075000	0.651741	
mm_152916.1	chr19	27762247	27762447	-	1	NA	NA	NA	220601	NM_001166414	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.010000	0.328358	
mm_80486.1	chr9	78340390	78340590	+	1	NA	NA	NA	6655	NM_008182	14858	Mm.422778	NM_008182	ENSMUSG00000057933	Gsta2	Gst2-2|Gstc-2|Gstc2	glutathione S-transferase, alpha 2 (Yc2)	protein-coding	0.010000	0.537313	
mm_132312.1	chr16	33725383	33725583	+	1	NA	NA	NA	41017	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629|OTTMUSG00000027315	heart development protein with EGF-like domains 1	protein-coding	0.070000	0.631841	
mm_130292.1	chr15	97010050	97010250	-	1	NA	NA	NA	45806	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.050000	0.442786	-57(TCTTTTCTAGGG,+,0.00)
mm_8687.1	chr1	157108548	157108748	-	1	NA	NA	NA	2	NM_001305059	73435	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	0.020000	0.527363	
mm_81530.1	chr9	110062956	110063156	+	1	NA	NA	NA	11035	NM_001311164	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.020000	0.462687	
mm_148131.1	chr18	75697457	75697657	-	1	NA	NA	NA	139	NM_201354	269037	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0.045000	0.626866	
mm_102111.1	chr11	53266902	53267102	-	1	NA	NA	NA	33477	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.020000	0.482587	
mm_157500.1	chrX	48513352	48513552	-	1	NA	NA	NA	111	NM_001290364	26926	Mm.240434	NM_012019	ENSMUSG00000036932	Aifm1	AIF|AIFsh2|Hq|Pdcd8	apoptosis-inducing factor, mitochondrion-associated 1	protein-coding	0.080000	0.656716	
mm_49555.1	chr6	30544798	30544998	+	1	NA	NA	NA	3256	NM_001024698	232680	Mm.268855	NM_001024698	ENSMUSG00000071553	Cpa2	-	carboxypeptidase A2, pancreatic	protein-coding	0.015000	0.442786	
mm_28181.1	chr3	88000929	88001129	-	1	NA	NA	NA	-673	NM_001109758	12032	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0.020000	0.597015	
mm_58507.1	chr7	3981057	3981257	+	1	NA	NA	NA	-65656	NR_028115	18726	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	0.005000	0.427861	56(CACTTGAAAAGG,-,0.00)
mm_131280.1	chr16	11077779	11077979	+	1	NA	NA	NA	10051	NM_134105	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.015000	0.487562	
mm_128012.1	chr15	13173583	13173783	-	1	NA	NA	NA	-8	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.020000	0.587065	
mm_170803.1	chr2	175703580	175703780	-	1	NA	NA	NA	18	NM_001177406	100303732	Mm.484983	NM_001177404	ENSMUSG00000095199	Zfp967	Gm14431|OTTMUSG00000016608	zinc finger protein 967	protein-coding	0.015000	0.487562	
mm_941.1	chr1	56451268	56451468	+	1	NA	NA	NA	186083	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	0.025000	0.452736	
mm_79213.1	chr9	49055559	49055759	+	1	NA	NA	NA	78	NM_012039	26951	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	0.085000	0.661692	
mm_78098.1	chr9	18645103	18645303	+	1	NA	NA	NA	110430	NM_146606	18322	Mm.246530	NM_146606	ENSMUSG00000054141	Olfr24	MOR132-1|MTPCR51	olfactory receptor 24	protein-coding	0.000000	0.407960	
mm_69103.1	chr7	127020229	127020429	-	1	NA	NA	NA	882	NM_001102563	69017	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.010000	0.557214	
mm_85353.1	chr9	103211800	103212000	-	1	NA	NA	NA	-9835	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.020000	0.537313	
mm_168546.1	chr1	162740389	162740589	-	1	NA	NA	NA	67	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.100000	0.611940	
mm_92012.1	chr10	62342538	62342738	-	1	NA	NA	NA	2031	NR_038038	70162	Mm.441212	NR_038038		Hk1os	2210417K05Rik	hexokinase 1, opposite strand	ncRNA	0.025000	0.606965	
mm_113559.1	chr13	38151339	38151539	+	1	NA	NA	NA	145	NM_023842	109620	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding	0.120000	0.726368	
mm_53527.1	chr6	136532858	136533058	+	1	NA	NA	NA	14107	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.000000	0.502488	
mm_81950.1	chr9	120539733	120539933	+	1	NA	NA	NA	15	NM_178676	215446	Mm.76648	NM_178676	ENSMUSG00000041608	Entpd3	Cd39l3|HB6|NTPDase-3	ectonucleoside triphosphate diphosphohydrolase 3	protein-coding	0.080000	0.711443	
mm_75250.1	chr8	40308313	40308513	-	1	NA	NA	NA	362	NM_030110	78506	Mm.169893	NM_030110	ENSMUSG00000039478	Micu3	2900075B16Rik|Efha2	mitochondrial calcium uptake family, member 3	protein-coding	0.095000	0.731343	
mm_26662.1	chr3	154707523	154707723	+	1	NA	NA	NA	-3510	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.000000	0.517413	
mm_73218.1	chr8	97163674	97163874	+	1	NA	NA	NA	-617801	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.040000	0.442786	
mm_88717.1	chr10	80157949	80158149	+	1	NA	NA	NA	8367	NM_001305799	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.015000	0.383085	8(TTTTTTAAAGCT,+,0.00)
mm_139616.1	chr17	57361597	57361797	+	1	NA	NA	NA	3011	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.010000	0.492537	45(GCTTAAAGAGAA,+,0.00)
mm_91818.1	chr10	55215080	55215280	-	1	NA	NA	NA	-891737	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding	0.005000	0.363184	
mm_110988.1	chr12	77134246	77134446	-	1	NA	NA	NA	-103758	NM_001252614	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.015000	0.477612	-26(GTCCTTAAAAGG,-,0.00),-24(CCTTAAAAGGAG,+,0.00)
mm_72365.1	chr8	80859279	80859479	+	1	NA	NA	NA	21100	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.015000	0.452736	
mm_164781.1	chr18	5671058	5671258	+	1	NA	NA	NA	-78721	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	0.005000	0.348259	
mm_86517.1	chr10	7708951	7709151	+	1	NA	NA	NA	-16949	NM_011835	23924	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	0.015000	0.497512	57(TCCCATTTAAGC,-,0.00)
mm_96099.1	chr11	60454522	60454722	+	1	NA	NA	NA	5	NM_021354	13495	Mm.41803	NM_021354	ENSMUSG00000020537	Drg2	AI255295|AI461605	developmentally regulated GTP binding protein 2	protein-coding	0.080000	0.567164	
mm_69296.1	chr7	128271599	128271799	-	1	NA	NA	NA	6002	NM_133254	246787	Mm.38870	NM_133254	ENSMUSG00000030781	Slc5a2	Sglt2	solute carrier family 5 (sodium/glucose cotransporter), member 2	protein-coding	0.015000	0.606965	
mm_12249.1	chr2	68891284	68891484	+	1	NA	NA	NA	29943	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.005000	0.338308	
mm_136263.1	chr16	91028743	91028943	-	1	NA	NA	NA	15536	NM_026110	67367	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.005000	0.293532	-64(GTTTTAATAGGC,+,0.00),17(AGCTATTTAAGG,-,0.00)
mm_154430.1	chrM	536	736	-	1	NA	NA	NA	NA	NA									0.020000	0.383085	-50(CGGTATATAGGC,-,0.00)
mm_33070.1	chr4	123630154	123630354	+	1	NA	NA	NA	13834	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.005000	0.452736	
mm_86351.1	chr9	123632436	123632636	-	1	NA	NA	NA	29	NM_011731	22599	Mm.41963	NM_011731	ENSMUSG00000025243	Slc6a20b	AA986306|Sit1|Slc6a20|XT3|Xtrp3	solute carrier family 6 (neurotransmitter transporter), member 20B	protein-coding	0.010000	0.492537	
mm_43711.1	chr5	139380570	139380770	+	1	NA	NA	NA	3	NM_030258	80290	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|PGR8	G protein-coupled receptor 146	protein-coding	0.145000	0.810945	
mm_38451.1	chr4	140246672	140246872	-	1	NA	NA	NA	39	NM_198610	230868	Mm.298731	NM_198610	ENSMUSG00000040972	Igsf21	BC055811|Gm141	immunoglobulin superfamily, member 21	protein-coding	0.130000	0.771144	
mm_10007.1	chr1	191575454	191575654	-	1	NA	NA	NA	-10	NM_029766	76843	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	0.120000	0.671642	
mm_150386.1	chr19	36348385	36348585	+	1	NA	NA	NA	-30582	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.180000	0.796020	
mm_96180.1	chr11	61653206	61653406	+	1	NA	NA	NA	-15	NM_027817	71520	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.025000	0.562189	
mm_141290.1	chr17	28066992	28067192	-	1	NA	NA	NA	13492	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.040000	0.567164	
mm_101088.1	chr11	11836168	11836368	-	1	NA	NA	NA	-27306	NM_001163360	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.000000	0.398010	
mm_141410.1	chr17	29398031	29398231	-	1	NA	NA	NA	37217	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.030000	0.641791	
mm_85036.1	chr9	88522786	88522986	-	1	NA	NA	NA	11	NR_040721	72655	Mm.21798	NR_040721	ENSMUSG00000097195	Snhg5	2810026P18Rik|4933428I09Rik|mU50HG-b	small nucleolar RNA host gene 5	ncRNA	0.065000	0.517413	-37(GACTATAAAAGG,-,0.00)
mm_99617.1	chr11	104607932	104608132	+	1	NA	NA	NA	32	NM_016780	16416	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding	0.120000	0.746269	
mm_121209.1	chr14	103053761	103053961	+	1	NA	NA	NA	6849	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.010000	0.497512	
mm_13472.1	chr2	105682637	105682837	+	1	NA	NA	NA	274	NM_001310145	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.035000	0.477612	
mm_123044.1	chr14	55590844	55591044	-	1	NA	NA	NA	77	NM_011190	19188	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	0.035000	0.641791	
mm_83883.1	chr9	55410461	55410661	-	1	NA	NA	NA	83612	NM_172923	244886	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.020000	0.527363	-33(CCACATAAAAGG,-,0.00)
mm_107081.1	chr12	17266486	17266686	+	1	NA	NA	NA	-9	NM_027959	71853	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	0.150000	0.741294	
mm_81095.1	chr9	106374113	106374313	+	1	NA	NA	NA	5581	NM_153459	235584	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.020000	0.557214	53(ATTTTTAAAGAC,+,0.00)
mm_146037.1	chr18	69550293	69550493	+	1	NA	NA	NA	204672	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.010000	0.333333	
mm_133916.1	chr16	97557817	97558017	+	1	NA	NA	NA	21834	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.000000	0.368159	
mm_156925.1	chrX	169267492	169267692	+	1	NA	NA	NA	52780	NM_001331050	15159	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	0.000000	0.288557	
mm_24517.1	chr3	92690859	92691059	+	1	NA	NA	NA	-3749	NM_027137	69611	Mm.176243	NM_027137	ENSMUSG00000103243	Lce1d	2310037L11Rik|AI415320|Sprrl7	late cornified envelope 1D	protein-coding	0.015000	0.308458	
mm_31820.1	chr4	66841801	66842001	+	1	NA	NA	NA	14350	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.010000	0.293532	
mm_137816.1	chr17	30077411	30077611	+	1	NA	NA	NA	72424	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.025000	0.442786	
mm_97182.1	chr11	75550044	75550244	+	1	NA	NA	NA	-1285	NR_039553	100628624		NR_039553	ENSMUSG00000093100	Mir3971	mmu-mir-3971|mu-mir-3971	microRNA 3971	ncRNA	0.015000	0.502488	-26(GGCCTTTAAAAA,-,0.00),-25(GCCTTTAAAAAA,-,0.00),-24(CCTTTAAAAAAG,+,0.00)
mm_50659.1	chr6	51470553	51470753	+	1	NA	NA	NA	37	NM_007624	12417	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	0.140000	0.766169	
mm_138109.1	chr17	34121322	34121522	+	1	NA	NA	NA	325	NM_010238	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.050000	0.676617	
mm_109747.1	chr12	117626271	117626471	+	1	NA	NA	NA	109892	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.000000	0.343284	
mm_30838.1	chr4	22486846	22487046	+	1	NA	NA	NA	1420	NM_008899	18992	Mm.129387	NM_008899	ENSMUSG00000095139	Pou3f2	9430075J19Rik|A230098E07Rik|Brn-2|Brn2|OTF-7|Otf7|oct-7	POU domain, class 3, transcription factor 2	protein-coding	0.045000	0.582090	
mm_106820.1	chr12	7983824	7984024	+	1	NA	NA	NA	6247	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.025000	0.477612	
mm_136970.1	chr17	15735683	15735883	+	1	NA	NA	NA	30816	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.025000	0.437811	
mm_92371.1	chr10	76110859	76111059	-	1	NA	NA	NA	59	NM_023219	64454	Mm.155678	NM_023219	ENSMUSG00000020226	Slc5a4b	2010104G07Rik|SAAT1|SGLT3-b|SGLT3b|pSGLT2	solute carrier family 5 (neutral amino acid transporters, system A), member 4b	protein-coding	0.010000	0.522388	
mm_74600.1	chr8	11635655	11635855	-	1	NA	NA	NA	2	NM_133971	102334	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	0.105000	0.701493	
mm_112172.1	chr12	113421024	113421224	-	1	NA	NA	NA	-68441	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.577114	
mm_62895.1	chr7	116093256	116093456	+	1	NA	NA	NA	-24	NM_019772	56372	Mm.24231	NM_019772	ENSMUSG00000030663	1110004F10Rik	Smacp|Smap|sid2057|sid2057p	RIKEN cDNA 1110004F10 gene	protein-coding	0.075000	0.621891	
mm_107288.1	chr12	29937882	29938082	+	1	NA	NA	NA	-54	NM_181395	69675	Mm.251774	NM_181395	ENSMUSG00000020674	Pxdn	2310075M15Rik|C85409|E330004E07|VPO1|mKIAA0230	peroxidasin	protein-coding	0.100000	0.736318	
mm_157875.1	chrX	75673240	75673440	-	1	NA	NA	NA	91359	NR_029443	74396	Mm.162493	NR_029443	ENSMUSG00000087396	4933407K13Rik	A130080L05Rik	RIKEN cDNA 4933407K13 gene	ncRNA	0.060000	0.661692	
mm_159506.1	chr4	47057153	47057353	-	1	NA	NA	NA	53	NM_001024136	75691	Mm.86866	NM_001024136	ENSMUSG00000066191	Anks6	2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding	0.175000	0.835821	
mm_37560.1	chr4	126195060	126195260	-	1	NA	NA	NA	7550	NM_146153	230753	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0.015000	0.482587	
mm_51137.1	chr6	68939471	68939671	+	1	NA	NA	NA	387603	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.417910	
mm_98159.1	chr11	87662549	87662749	+	1	NA	NA	NA	-438	NM_172448	207742	Mm.440230	NM_172448	ENSMUSG00000034177	Rnf43	4732452J19Rik	ring finger protein 43	protein-coding	0.025000	0.512438	
mm_132328.1	chr16	33799401	33799601	+	1	NA	NA	NA	5464	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.030000	0.542289	
mm_165849.1	chr4	8842937	8843137	+	1	NA	NA	NA	152631	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.020000	0.487562	
mm_100207.1	chr11	116852430	116852630	+	1	NA	NA	NA	564	NM_011358	20382	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0.155000	0.805970	
mm_136062.1	chr16	84621467	84621667	-	1	NA	NA	NA	-58222	NR_040537	78023	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0.015000	0.407960	
mm_127459.1	chr15	101272062	101272262	+	1	NA	NA	NA	5316	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.030000	0.562189	4(CAGCCTAAAAGG,-,0.00),6(GCCTAAAAGGGC,+,0.00)
mm_136356.1	chr16	92762068	92762268	-	1	NA	NA	NA	63906	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.015000	0.507463	
mm_9357.1	chr1	172197800	172198000	-	1	NA	NA	NA	8904	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.020000	0.522388	
mm_139062.1	chr17	46496681	46496881	+	1	NA	NA	NA	-8	NM_207161	381101	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	0.105000	0.656716	
mm_93647.1	chr10	117360955	117361155	-	1	NA	NA	NA	15918	NM_001013391	432508	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.025000	0.636816	
mm_119091.1	chr14	30892248	30892448	+	1	NA	NA	NA	5872	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.025000	0.527363	
mm_91930.1	chr10	60380127	60380327	-	1	NA	NA	NA	-19499	NM_001164374	100302688	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.005000	0.552239	
mm_51673.1	chr6	86405780	86405980	+	1	NA	NA	NA	1661	NM_001164078	21841	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	0.000000	0.323383	
mm_51198.1	chr6	71284209	71284409	+	1	NA	NA	NA	12290	NM_145568	57896	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	0.010000	0.462687	53(GCTCATATAGTG,+,0.00)
mm_39196.1	chr4	156013641	156013841	-	1	NA	NA	NA	46	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.030000	0.512438	-79(GGCTATAAGAAC,-,0.00)
mm_148918.1	chr19	6976279	6976479	+	1	NA	NA	NA	1331	NM_008889	18938	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.005000	0.592040	
mm_141103.1	chr17	26021650	26021850	-	1	NA	NA	NA	110	NM_153140	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.010000	0.522388	
mm_168508.1	chr1	156365936	156366136	+	1	NA	NA	NA	33954	NM_001198597	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.035000	0.487562	
mm_44059.1	chr5	148265185	148265385	+	1	NA	NA	NA	127530	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.045000	0.606965	
mm_111601.1	chr12	102302310	102302510	-	1	NA	NA	NA	18769	NM_001161365	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.020000	0.532338	
mm_112852.1	chr13	20836105	20836305	+	1	NA	NA	NA	42092	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.308458	-51(CTTTTTAAAAGC,+,0.00),-51(CTTTTTAAAAGC,-,0.00)
mm_48074.1	chr5	136623032	136623232	-	1	NA	NA	NA	-55642	NM_001291238	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.035000	0.522388	
mm_147813.1	chr18	61725347	61725547	-	1	NA	NA	NA	884	NM_021296	17714	Mm.269657	NM_021296	ENSMUSG00000024580	Grpel2	mt-GrpE#2|mt-Grpel2	GrpE-like 2, mitochondrial	protein-coding	0.005000	0.398010	
mm_107398.1	chr12	33333054	33333254	+	1	NA	NA	NA	30639	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.005000	0.552239	
mm_147222.1	chr18	38192025	38192225	-	1	NA	NA	NA	17637	NM_029357	75599	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.030000	0.582090	
mm_42986.1	chr5	123302307	123302507	+	1	NA	NA	NA	-42041	NM_029850	77045	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0.035000	0.532338	
mm_34211.1	chr4	140961287	140961487	+	1	NA	NA	NA	116	NM_023374	67680	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.110000	0.696517	
mm_123636.1	chr14	68533724	68533924	-	1	NA	NA	NA	-135	NM_007402	11500	Mm.261495	NM_007402	ENSMUSG00000022056	Adam7	ADAM 7|EAP1|EAPI	a disintegrin and metallopeptidase domain 7	protein-coding	0.000000	0.462687	
mm_67304.1	chr7	79386691	79386891	-	1	NA	NA	NA	236	NM_020599	19771	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	0.010000	0.562189	
mm_120022.1	chr14	55765751	55765951	+	1	NA	NA	NA	-111	NM_008519	16995	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	0.015000	0.572139	
mm_124848.1	chr15	9524235	9524435	+	1	NA	NA	NA	5541	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.005000	0.402985	
mm_71595.1	chr8	54955062	54955262	+	1	NA	NA	NA	434	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.030000	0.472637	
mm_158431.1	chrX	139871523	139871723	-	1	NA	NA	NA	31	NM_029413	75746	Mm.23269	NM_029413	ENSMUSG00000031434	Morc4	1600017G11Rik|5630401M14Rik|AA117449|Zcwcc2	microrchidia 4	protein-coding	0.065000	0.656716	
mm_153060.1	chr19	32182089	32182289	-	1	NA	NA	NA	28824	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.025000	0.467662	
mm_71538.1	chr8	47094712	47094912	+	1	NA	NA	NA	107925	NM_177304	320981	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.005000	0.343284	
mm_48334.1	chr5	139129607	139129807	-	1	NA	NA	NA	45	NM_008923	19085	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	0.180000	0.820896	
mm_106245.1	chr11	117782114	117782314	-	1	NA	NA	NA	-83	NM_001195090	217356	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0.055000	0.686567	
mm_139688.1	chr17	57420752	57420952	+	1	NA	NA	NA	62166	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.363184	
mm_111800.1	chr12	104998596	104998796	-	1	NA	NA	NA	-19	NM_001042699	212073	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.025000	0.532338	
mm_168014.1	chrY	57896472	57896672	-	1	NA	NA	NA	-362846	NM_001017393	434935	Mm.426195	NM_001017393	ENSMUSG00000096122	Gm21943	-	predicted gene, 21943	protein-coding	0.000000	0.388060	-19(AACCATAAAAAG,-,0.00)
mm_47878.1	chr5	134702920	134703120	-	1	NA	NA	NA	-14430	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.020000	0.582090	
mm_148051.1	chr18	71741467	71741667	-	1	NA	NA	NA	609502	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.000000	0.363184	
mm_8666.1	chr1	156656420	156656620	-	1	NA	NA	NA	17819	NM_023141	30935	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.020000	0.512438	
mm_32845.1	chr4	117849268	117849468	+	1	NA	NA	NA	14110	NM_008135	14664	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	0.050000	0.616915	
mm_173079.1	chrX	141747766	141747966	-	1	NA	NA	NA	-22649	NM_010572	16370	Mm.261591	NM_010572	ENSMUSG00000054667	Irs4	IRS-4	insulin receptor substrate 4	protein-coding	0.040000	0.482587	
mm_52510.1	chr6	115361119	115361319	+	1	NA	NA	NA	75	NM_001308352	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.095000	0.681592	
mm_82068.1	chr9	122873827	122874027	+	1	NA	NA	NA	-7921	NM_173364	235682	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	0.000000	0.492537	
mm_80038.1	chr9	68969035	68969235	+	1	NA	NA	NA	203789	NR_033299	320440	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.015000	0.512438	
mm_104672.1	chr11	97663474	97663674	-	1	NA	NA	NA	162	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.100000	0.731343	
mm_109790.1	chr12	3249687	3249887	-	1	NA	NA	NA	13996	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.020000	0.462687	
mm_75696.1	chr8	68212007	68212207	-	1	NA	NA	NA	-64421	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.005000	0.407960	-60(TGCTTTTTAAAG,-,0.00),-58(CTTTTTAAAGAA,+,0.00)
mm_141440.1	chr17	29658245	29658445	-	1	NA	NA	NA	-2250	NM_028791	74157	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	0.005000	0.437811	
mm_68500.1	chr7	111079227	111079427	-	1	NA	NA	NA	3703	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.000000	0.383085	11(ATCCTTAAAGGG,-,0.00),13(CCTTAAAGGGGT,+,0.00)
mm_148004.1	chr18	67774593	67774793	-	1	NA	NA	NA	-183	NM_028112	72124	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	0.065000	0.582090	
mm_6701.1	chr1	80758600	80758800	-	1	NA	NA	NA	-147	NM_175291	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.125000	0.721393	
mm_95112.1	chr11	34075151	34075351	+	1	NA	NA	NA	28050	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.020000	0.432836	-50(CCTTTTATACTA,+,0.00)
mm_154832.1	chrX	18162597	18162797	+	1	NA	NA	NA	122	NM_001310444	22289	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	0.090000	0.671642	
mm_85849.1	chr9	110653974	110654174	-	1	NA	NA	NA	87	NM_183276	235627	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0.115000	0.746269	
mm_42585.1	chr5	117319209	117319409	+	1	NA	NA	NA	43	NM_001033311	231668	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	0.110000	0.751244	
mm_21340.1	chr2	157107445	157107645	-	1	NA	NA	NA	20490	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.020000	0.412935	
mm_38224.1	chr4	135987068	135987268	-	1	NA	NA	NA	76	NM_025411	66193	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	0.185000	0.776119	
mm_37112.1	chr4	116641020	116641220	-	1	NA	NA	NA	10554	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.010000	0.522388	
mm_57881.1	chr6	131293118	131293318	-	1	NA	NA	NA	26	NM_001327860	66441	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	0.110000	0.577114	
mm_88441.1	chr10	77546014	77546214	+	1	NA	NA	NA	15766	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.040000	0.542289	
mm_74310.1	chr8	126594603	126594803	+	1	NA	NA	NA	-1267	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.110000	0.721393	
mm_25063.1	chr3	99240233	99240433	+	1	NA	NA	NA	-13427	NM_009323	21384	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0.070000	0.711443	
mm_47532.1	chr5	124189638	124189838	-	1	NA	NA	NA	-2556	NM_001289472	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.010000	0.552239	
mm_27377.1	chr3	50443416	50443616	-	1	NA	NA	NA	97	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.040000	0.557214	
mm_148745.1	chr19	6046537	6046737	+	1	NA	NA	NA	61	NM_028769	74126	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0.045000	0.487562	
mm_86096.1	chr9	115281971	115282171	-	1	NA	NA	NA	-1	NR_029430	111186	Mm.484753	NR_029430		Stmn1-rs1	Lag-rs1|Lap18-rs1	stathmin 1, related sequence 1	pseudo	0.015000	0.512438	
mm_43456.1	chr5	136228325	136228525	+	1	NA	NA	NA	16515	NM_001302939	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.000000	0.507463	
mm_26871.1	chr3	17326465	17326665	-	1	NA	NA	NA	-463356	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.015000	0.373134	
mm_122483.1	chr14	46386331	46386531	-	1	NA	NA	NA	4238	NM_001316360	12159	Mm.6813	NM_007554	ENSMUSG00000021835	Bmp4	Bmp-4|Bmp2b|Bmp2b-1|Bmp2b1	bone morphogenetic protein 4	protein-coding	0.020000	0.537313	
mm_136512.1	chr16	97170825	97171025	-	1	NA	NA	NA	-190	NM_031174	13508	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	Down syndrome cell adhesion molecule	protein-coding	0.075000	0.626866	
mm_80525.1	chr9	80112809	80113009	+	1	NA	NA	NA	46006	NM_146003	215351	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.005000	0.363184	
mm_19033.1	chr2	76969634	76969834	-	1	NA	NA	NA	12813	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.055000	0.592040	
mm_92588.1	chr10	80074970	80075170	-	1	NA	NA	NA	21051	NM_001037741	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.030000	0.597015	
mm_34642.1	chr4	150678039	150678239	+	1	NA	NA	NA	-25965	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.005000	0.611940	
mm_12252.1	chr2	68905599	68905799	+	1	NA	NA	NA	44258	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.015000	0.412935	
mm_150015.1	chr19	29367358	29367558	+	1	NA	NA	NA	20	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.070000	0.601990	86(CACTTTAAAGAG,-,0.00),88(CTTTAAAGAGCC,+,0.00)
mm_123639.1	chr14	68582009	68582209	-	1	NA	NA	NA	-37	NM_021475	58860	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0.010000	0.442786	
mm_146768.1	chr18	20001940	20002140	-	1	NA	NA	NA	57	NM_007882	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding	0.055000	0.577114	
mm_82224.1	chr9	3025445	3025645	-	1	NA	NA	NA	13198	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.343284	
mm_25745.1	chr3	123085576	123085776	+	1	NA	NA	NA	-50689	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.020000	0.547264	
mm_158132.1	chrX	103186348	103186548	-	1	NA	NA	NA	216	NM_008671	17954	Mm.388694	NM_008671	ENSMUSG00000082229	Nap1l2	Bpx	nucleosome assembly protein 1-like 2	protein-coding	0.050000	0.582090	
mm_158303.1	chrX	121672749	121672949	-	1	NA	NA	NA	724536	NM_138742	54561	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	0.010000	0.497512	
mm_140308.1	chr17	85691149	85691349	+	1	NA	NA	NA	-2995	NM_011380	20472	Mm.5039	NM_011380	ENSMUSG00000024134	Six2	-	sine oculis-related homeobox 2	protein-coding	0.015000	0.522388	
mm_124415.1	chr14	118030586	118030786	-	1	NA	NA	NA	21560	NM_010024	13190	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	0.000000	0.328358	
mm_52843.1	chr6	121838400	121838600	+	1	NA	NA	NA	-41	NM_008645	17836	Mm.1311	NM_008645	ENSMUSG00000059908	Mug1	-	murinoglobulin 1	protein-coding	0.010000	0.417910	
mm_135476.1	chr16	45953430	45953630	-	1	NA	NA	NA	56883	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.005000	0.527363	-9(GACCATAAAAAA,-,0.00)
mm_61377.1	chr7	70381650	70381850	+	1	NA	NA	NA	-15004	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.015000	0.373134	
mm_50120.1	chr6	41535374	41535574	+	1	NA	NA	NA	13698	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.015000	0.527363	
mm_124496.1	chr14	121797737	121797937	-	1	NA	NA	NA	-103	NM_134074	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.150000	0.796020	
mm_144153.1	chr18	5591815	5592015	+	1	NA	NA	NA	55	NM_011546	21417	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.095000	0.716418	-30(GCATTTAGACAC,+,0.00)
mm_86541.1	chr10	8874130	8874330	+	1	NA	NA	NA	11840	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.005000	0.502488	
mm_95054.1	chr11	32384986	32385186	+	1	NA	NA	NA	37275	NM_177364	268396	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.000000	0.383085	
mm_89963.1	chr10	111298586	111298786	+	1	NA	NA	NA	7	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.100000	0.641791	
mm_167643.1	chr9	64814447	64814647	+	1	NA	NA	NA	3536	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.005000	0.492537	
mm_130885.1	chr15	102257298	102257498	-	1	NA	NA	NA	124	NM_011244	19411	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.085000	0.606965	
mm_76597.1	chr8	89147150	89147350	-	1	NA	NA	NA	-103088	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.030000	0.502488	
mm_12370.1	chr2	69821866	69822066	+	1	NA	NA	NA	-404	NM_177784	277396	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	0.025000	0.507463	
mm_24529.1	chr3	93277487	93277687	+	1	NA	NA	NA	-42162	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.005000	0.368159	
mm_39391.1	chr5	13399407	13399607	+	1	NA	NA	NA	198	NM_009152	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.050000	0.562189	
mm_59264.1	chr7	24884718	24884918	+	1	NA	NA	NA	104	NM_023133	20085	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	0.120000	0.741294	
mm_35129.1	chr4	11248119	11248319	-	1	NA	NA	NA	6040	NM_178112	72656	Mm.246713	NM_178112	ENSMUSG00000040738	Ints8	2810013E07Rik|AV063769|D130008D20Rik	integrator complex subunit 8	protein-coding	0.040000	0.611940	
mm_44192.1	chr5	3501559	3501759	-	1	NA	NA	NA	-42174	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.015000	0.502488	
mm_44791.1	chr5	32354724	32354924	-	1	NA	NA	NA	1244	NM_172147	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0.030000	0.542289	
mm_8064.1	chr1	135430398	135430598	-	1	NA	NA	NA	-7	NM_153774	226432	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9|mKIAA1192	importin 9	protein-coding	0.140000	0.736318	
mm_45884.1	chr5	88521108	88521308	-	1	NA	NA	NA	6689	NM_152839	16069	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	0.010000	0.373134	
mm_119528.1	chr14	47648359	47648559	+	1	NA	NA	NA	-852	NM_001347527	16709	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	0.025000	0.432836	
mm_17312.1	chr2	26409085	26409285	-	1	NA	NA	NA	34	NM_033134	64436	Mm.330070	NM_033134	ENSMUSG00000026925	Inpp5e	1200002L24Rik|72kDa|mKIAA0123	inositol polyphosphate-5-phosphatase E	protein-coding	0.090000	0.701493	
mm_169257.1	chr1	37997097	37997297	-	1	NA	NA	NA	11	NM_172054	98258	Mm.28438	NM_172054	ENSMUSG00000058407	Txndc9	AI098020|APACD	thioredoxin domain containing 9	protein-coding	0.060000	0.552239	
mm_158150.1	chrX	103469635	103469835	-	1	NA	NA	NA	13498	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.015000	0.537313	
mm_157621.1	chrX	56549577	56549777	-	1	NA	NA	NA	-71	NM_001033372	270599	Mm.424438	NM_001033372	ENSMUSG00000064016	Gm648	-	predicted gene 648	protein-coding	0.015000	0.547264	
mm_82448.1	chr9	15326447	15326647	-	1	NA	NA	NA	-217	NR_028568	100216535		NR_028568		Scarna9	Z32	small Cajal body-specific RNA 9	ncRNA	0.015000	0.358209	
mm_35143.1	chr4	11558659	11558859	-	1	NA	NA	NA	-161	NM_001039556	623474	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	0.040000	0.447761	
mm_156893.1	chrX	166674439	166674639	+	1	NA	NA	NA	12514	NR_046015	382255	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA	0.005000	0.308458	
mm_63947.1	chr7	139834263	139834463	+	1	NA	NA	NA	189	NM_177469	52389	Mm.39863	NM_177469	ENSMUSG00000025475	Adgra1	2900059M17Rik|D7Ertd680e|Gpr123	adhesion G protein-coupled receptor A1	protein-coding	0.040000	0.577114	
mm_112155.1	chr12	113288654	113288854	-	1	NA	NA	NA	102851	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.010000	0.592040	
mm_92896.1	chr10	83153879	83154079	-	1	NA	NA	NA	168482	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.015000	0.487562	
mm_39883.1	chr5	31108224	31108424	+	1	NA	NA	NA	5	NM_177677	231098	Mm.189696	NM_177677	ENSMUSG00000053856	Dnajc5g	4922503E23Rik	DnaJ heat shock protein family (Hsp40) member C5 gamma	protein-coding	0.060000	0.537313	
mm_57026.1	chr6	122282799	122282999	-	1	NA	NA	NA	-66	NM_016970	50928	Mm.20434	NM_016970	ENSMUSG00000030114	Klrg1	2F1-Ag|MAFA|MAFA-L	killer cell lectin-like receptor subfamily G, member 1	protein-coding	0.005000	0.437811	
mm_65146.1	chr7	19586324	19586524	-	1	NA	NA	NA	9137	NM_022409	63872	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0.155000	0.726368	
mm_156485.1	chrX	144335815	144336015	+	1	NA	NA	NA	17949	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.010000	0.452736	
mm_121560.1	chr14	122484297	122484497	+	1	NA	NA	NA	9013	NM_009574	22772	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0.040000	0.577114	
mm_63531.1	chr7	127968705	127968905	+	1	NA	NA	NA	1326	NM_139149	233908	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0.005000	0.353234	
mm_70904.1	chr8	25640687	25640887	+	1	NA	NA	NA	210	NM_001081269	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.025000	0.467662	
mm_53884.1	chr6	3345902	3346102	-	1	NA	NA	NA	53569	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.000000	0.393035	
mm_75651.1	chr8	65129317	65129517	-	1	NA	NA	NA	120	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA	0.025000	0.442786	
mm_99848.1	chr11	109362623	109362823	+	1	NA	NA	NA	-71	NM_010303	14674	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0.145000	0.805970	
mm_57808.1	chr6	129451646	129451846	-	1	NA	NA	NA	254	NM_175526	243653	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	0.020000	0.517413	
mm_121186.1	chr14	103049294	103049494	+	1	NA	NA	NA	2382	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.015000	0.437811	
mm_34783.1	chr4	154142307	154142507	+	1	NA	NA	NA	35	NM_021499	59002	Mm.46508	NM_021499	ENSMUSG00000029029	Wrap73	2610044M17Rik|5330425N03Rik|Dd57|Wdr8	WD repeat containing, antisense to Trp73	protein-coding	0.095000	0.691542	
mm_27165.1	chr3	33143147	33143347	-	1	NA	NA	NA	-56	NM_001163516	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.195000	0.835821	
mm_10246.1	chr2	9141581	9141781	+	1	NA	NA	NA	-47834	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.005000	0.393035	
mm_141812.1	chr17	34603617	34603817	-	1	NA	NA	NA	-156	NM_019403	54197	Mm.274542	NM_019403	ENSMUSG00000015478	Rnf5	2410131O05Rik|AA407576|NG2	ring finger protein 5	protein-coding	0.025000	0.472637	
mm_94754.1	chr11	21118099	21118299	+	1	NA	NA	NA	26875	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.020000	0.437811	-84(GTTCTTATAGCC,+,0.00)
mm_37826.1	chr4	131960236	131960436	-	1	NA	NA	NA	38565	NM_001201367	623230	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.015000	0.437811	
mm_158575.1	chrX	150594678	150594878	-	1	NA	NA	NA	4857	NM_008824	18639	Mm.249131	NM_008824	ENSMUSG00000025271	Pfkfb1	PFK/FBPase 1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	protein-coding	0.020000	0.537313	
mm_73485.1	chr8	107031141	107031341	+	1	NA	NA	NA	-85	NM_126165	116733	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0.090000	0.701493	-24(CCCTCTTAGAGG,-,0.00),-23(CCTCTTAGAGGA,+,0.00)
mm_140363.1	chr17	86917350	86917550	+	1	NA	NA	NA	102	NM_030104	78469	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	0.020000	0.552239	
mm_46248.1	chr5	99248501	99248701	-	1	NA	NA	NA	4326	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.025000	0.497512	-20(GGCTTTTAAAGG,-,0.00),-19(GCTTTTAAAGGC,+,0.00),-19(GCTTTTAAAGGC,-,0.00),-18(CTTTTAAAGGCA,+,0.00)
mm_550.1	chr1	38019056	38019256	+	1	NA	NA	NA	21146	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.040000	0.402985	50(GTCCAGAAAAGG,-,0.00)
mm_106148.1	chr11	116581359	116581559	-	1	NA	NA	NA	-12	NM_173755	217342	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	0.185000	0.805970	
mm_53196.1	chr6	125538638	125538838	+	1	NA	NA	NA	-14210	NM_011708	22371	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.015000	0.542289	
mm_119650.1	chr14	52014867	52015067	+	1	NA	NA	NA	-409	NM_001253695	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.015000	0.557214	
mm_122818.1	chr14	54632209	54632409	-	1	NA	NA	NA	6999	NM_175204	73902	Mm.32009	NM_175204	ENSMUSG00000072423	Psmb11	5830406J20Rik|beta5t	proteasome (prosome, macropain) subunit, beta type, 11	protein-coding	0.110000	0.736318	
mm_67897.1	chr7	99535947	99536147	-	1	NA	NA	NA	561	NM_177231	109689	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	0.050000	0.592040	
mm_106913.1	chr12	8216506	8216706	+	1	NA	NA	NA	8479	NM_001167767	68832	Mm.25608	NM_172401	ENSMUSG00000037669	Ldah	1110057K04Rik|mLDAH	lipid droplet associated hydrolase	protein-coding	0.015000	0.447761	
mm_133218.1	chr16	75907023	75907223	+	1	NA	NA	NA	2143	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.000000	0.373134	
mm_91080.1	chr10	19011861	19012061	-	1	NA	NA	NA	2	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.015000	0.427861	-35(ATCTTTAAAAGT,-,0.00),-34(TCTTTAAAAGTG,+,0.00)
mm_6868.1	chr1	84281843	84282043	-	1	NA	NA	NA	2702	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.005000	0.432836	
mm_162735.1	chr10	54119356	54119556	+	1	NA	NA	NA	43534	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.005000	0.417910	
mm_62351.1	chr7	100498729	100498929	+	1	NA	NA	NA	5471	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.045000	0.597015	
mm_35721.1	chr4	44640485	44640685	-	1	NA	NA	NA	-62215	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0.000000	0.507463	
mm_163998.1	chr14	65262270	65262470	-	1	NA	NA	NA	93	NM_021458	14365	Mm.214687	NM_021458	ENSMUSG00000007989	Fzd3	AU020229|D930050A07Rik|Fz3	frizzled class receptor 3	protein-coding	0.170000	0.791045	
mm_86195.1	chr9	119895039	119895239	-	1	NA	NA	NA	244	NM_026236	67561	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	0.180000	0.830846	
mm_43555.1	chr5	137601460	137601660	+	1	NA	NA	NA	-501	NM_030037	68929	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	0.065000	0.487562	
mm_43947.1	chr5	145131362	145131562	+	1	NA	NA	NA	8627	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.025000	0.467662	
mm_103357.1	chr11	74851760	74851960	-	1	NA	NA	NA	16334	NR_105891	102465558		NR_105891	ENSMUSG00000098317	Mir6926	Gm27949|mmu-mir-6926	microRNA 6926	ncRNA	0.005000	0.517413	
mm_71718.1	chr8	61947595	61947795	+	1	NA	NA	NA	19608	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.005000	0.348259	
mm_7434.1	chr1	119913082	119913282	-	1	NA	NA	NA	-14	NM_175106	66343	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	0.080000	0.636816	
mm_90187.1	chr10	120165293	120165493	+	1	NA	NA	NA	36144	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.010000	0.562189	-34(TACTATAAAAGG,-,0.00)
mm_106018.1	chr11	116022563	116022763	-	1	NA	NA	NA	1841	NM_008211	15081	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0.010000	0.398010	-5(TTATTTATAAGG,-,0.00)
mm_154047.1	chr19	55095644	55095844	-	1	NA	NA	NA	3703	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.020000	0.462687	51(ATGTTTTAAAGG,-,0.00)
mm_167015.1	chr7	63875635	63875835	+	1	NA	NA	NA	-41122	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.005000	0.597015	
mm_2987.1	chr1	133131717	133131917	+	1	NA	NA	NA	651	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.095000	0.661692	
mm_144837.1	chr18	36529147	36529347	+	1	NA	NA	NA	1095	NM_001271544	240215	Mm.135463	NM_172830	ENSMUSG00000024485	Slc4a9	AE4|D630003B07|D630024F24Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 9	protein-coding	0.010000	0.601990	
mm_92584.1	chr10	80036661	80036861	-	1	NA	NA	NA	2898	NM_025554	66420	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0.020000	0.567164	
mm_80521.1	chr9	80067003	80067203	+	1	NA	NA	NA	200	NM_146003	215351	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.155000	0.761194	
mm_120983.1	chr14	78849096	78849296	+	1	NA	NA	NA	18	NM_173758	219189	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	0.105000	0.746269	
mm_61605.1	chr7	80028272	80028472	+	1	NA	NA	NA	2144	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.005000	0.427861	
mm_83801.1	chr9	53178529	53178729	-	1	NA	NA	NA	69483	NM_029936	77591	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	0.005000	0.383085	-57(CCTTTAATATCT,+,0.00)
mm_125748.1	chr15	73729058	73729258	+	1	NA	NA	NA	4228	NM_001166388	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.015000	0.472637	
mm_53489.1	chr6	135084084	135084284	+	1	NA	NA	NA	18522	NM_181444	232431	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	0.015000	0.487562	
mm_35372.1	chr4	33031163	33031363	-	1	NA	NA	NA	60	NR_036602	100504166	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	0.170000	0.786070	
mm_71403.1	chr8	46432756	46432956	+	1	NA	NA	NA	-38181	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.005000	0.507463	
mm_62498.1	chr7	101970566	101970766	+	1	NA	NA	NA	823	NM_133947	101706	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	0.040000	0.567164	-49(TGCCTTTAAAGA,-,0.00),-48(GCCTTTAAAGAA,+,0.00),-48(GCCTTTAAAGAA,-,0.00)
mm_35598.1	chr4	43031302	43031502	-	1	NA	NA	NA	-18	NM_023231	66592	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	0.090000	0.651741	
mm_115855.1	chr13	21289814	21290014	-	1	NA	NA	NA	2772	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.000000	0.368159	
mm_93950.1	chr10	127247525	127247725	-	1	NA	NA	NA	15738	NM_008447	16572	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	0.030000	0.552239	
mm_38064.1	chr4	134018756	134018956	-	1	NA	NA	NA	-40	NM_145833	83557	Mm.302567	NM_145833	ENSMUSG00000050966	Lin28a	AL024421|ENSMUSG00000070700|Gm10299|Lin-28|Lin28|Tex17|lin-28A	lin-28 homolog A (C. elegans)	protein-coding	0.055000	0.656716	
mm_57787.1	chr6	129269583	129269783	-	1	NA	NA	NA	5686	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.010000	0.402985	
mm_26256.1	chr3	142496783	142496983	+	1	NA	NA	NA	-51	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.025000	0.487562	
mm_105286.1	chr11	102444700	102444900	-	1	NA	NA	NA	2863	NM_199200	217219	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0.005000	0.447761	
mm_161240.1	chr13	96489691	96489891	-	1	NA	NA	NA	-18631	NM_001042714	271144	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0.005000	0.368159	
mm_30193.1	chr3	144706570	144706770	-	1	NA	NA	NA	13665	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.020000	0.348259	31(CCTTTAAGAAAC,+,0.00)
mm_143430.1	chr17	70851014	70851214	-	1	NA	NA	NA	96	NM_009372	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.045000	0.597015	
mm_130069.1	chr15	89315183	89315383	-	1	NA	NA	NA	28	NM_001081030	77980	Mm.35483	NM_030019	ENSMUSG00000036529	Sbf1	2610510A08Rik|B230113C15Rik|Mtmr5|mKIAA3020	SET binding factor 1	protein-coding	0.090000	0.731343	
mm_131591.1	chr16	18811680	18811880	+	1	NA	NA	NA	-141	NM_001161623	12544	Mm.1248	NM_009862	ENSMUSG00000000028	Cdc45	Cdc45l	cell division cycle 45	protein-coding	0.040000	0.497512	
mm_11121.1	chr2	28214047	28214247	+	1	NA	NA	NA	8458	NM_019498	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.020000	0.447761	
mm_80135.1	chr9	70678969	70679169	+	1	NA	NA	NA	87	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.100000	0.731343	
mm_150287.1	chr19	34492218	34492418	+	1	NA	NA	NA	-17183	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.005000	0.353234	
mm_81407.1	chr9	109051864	109052064	+	1	NA	NA	NA	-2902	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.025000	0.567164	
mm_1118.1	chr1	59912959	59913159	+	1	NA	NA	NA	53	NM_001037725	72750	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0.120000	0.746269	
mm_171385.1	chr4	121016788	121016988	-	1	NA	NA	NA	359	NM_133716	69780	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	0.080000	0.741294	
mm_94445.1	chr11	6366047	6366247	+	1	NA	NA	NA	-28978	NM_001005867	52915	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.040000	0.557214	-35(GTCCTTATAAAG,-,0.00),-33(CCTTATAAAGTG,+,0.00)
mm_80850.1	chr9	98331152	98331352	+	1	NA	NA	NA	34669	NM_144533	74080	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	0.000000	0.318408	
mm_39841.1	chr5	30888862	30889062	+	1	NA	NA	NA	27	NR_122116	231093	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0.080000	0.686567	
mm_38621.1	chr4	142048363	142048563	-	1	NA	NA	NA	30565	NR_131014	78917	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.020000	0.547264	
mm_147088.1	chr18	35648305	35648505	-	1	NA	NA	NA	962	NM_027222	69816	Mm.27252	NM_027222	ENSMUSG00000024353	Mzb1	2010001M09Rik|AV064572|PACAP|pERp1	marginal zone B and B1 cell-specific protein 1	protein-coding	0.015000	0.572139	
mm_51264.1	chr6	72097674	72097874	+	1	NA	NA	NA	166	NM_011375	20454	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.105000	0.726368	
mm_104218.1	chr11	88366852	88367052	-	1	NA	NA	NA	14179	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	0.025000	0.547264	
mm_167030.1	chr7	68284057	68284257	+	1	NA	NA	NA	-7563	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.015000	0.492537	
mm_34300.1	chr4	141746645	141746845	+	1	NA	NA	NA	70	NM_001081408	75986	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	0.020000	0.621891	
mm_30834.1	chr4	21964608	21964808	+	1	NA	NA	NA	33382	NM_175234	76132	Mm.159689	NM_175234	ENSMUSG00000028246	Faxc	6230409E13Rik|AW742931	failed axon connections homolog	protein-coding	0.025000	0.472637	
mm_140441.1	chr17	88530123	88530323	+	1	NA	NA	NA	99	NM_028658	73825	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0.080000	0.736318	
mm_60663.1	chr7	44997580	44997780	+	1	NA	NA	NA	32	NM_016849	54131	Mm.3960	NM_016849	ENSMUSG00000003184	Irf3	C920001K05Rik|IRF-3	interferon regulatory factor 3	protein-coding	0.050000	0.467662	
mm_109525.1	chr12	111537099	111537299	+	1	NA	NA	NA	-902	NM_178041	217869	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.005000	0.447761	
mm_151178.1	chr19	53313330	53313530	+	1	NA	NA	NA	2924	NM_001008542	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.115000	0.671642	
mm_71572.1	chr8	54106856	54107056	+	1	NA	NA	NA	29424	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding	0.005000	0.288557	
mm_114501.1	chr13	70573137	70573337	+	1	NA	NA	NA	-4	NR_045934	73584	Mm.442491	NR_045934	ENSMUSG00000101051	1700100L14Rik	-	RIKEN cDNA 1700100L14 gene	ncRNA	0.005000	0.447761	
mm_69268.1	chr7	127922596	127922796	-	1	NA	NA	NA	7417	NM_133351	76560	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0.005000	0.532338	
mm_154390.1	chrM	12863	13063	+	1	NA	NA	NA	NA	NA									0.040000	0.417910	
mm_79411.1	chr9	55149967	55150167	+	1	NA	NA	NA	-16	NM_001346658	109161	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0.115000	0.726368	
mm_147718.1	chr18	60817068	60817268	-	1	NA	NA	NA	5092	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.035000	0.462687	
mm_98721.1	chr11	96332345	96332545	+	1	NA	NA	NA	9319	NM_001079869	15410	Mm.342481	NM_010458	ENSMUSG00000048763	Hoxb3	Hox-2.7	homeobox B3	protein-coding	0.015000	0.447761	
mm_131135.1	chr16	6298806	6299006	+	1	NA	NA	NA	323319	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA	0.000000	0.422886	
mm_48541.1	chr5	142905226	142905426	-	1	NA	NA	NA	1428	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.020000	0.562189	
mm_15308.1	chr2	155517599	155517799	+	1	NA	NA	NA	-344	NM_019811	60525	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	0.055000	0.587065	
mm_28397.1	chr3	90052518	90052718	-	1	NA	NA	NA	-103	NM_001165984	74383	Mm.25610	NM_028475	ENSMUSG00000042520	Ubap2l	3110083O19Rik|4932431F02Rik|A430103N23Rik|C77168|Nice-4|mKIAA0144	ubiquitin-associated protein 2-like	protein-coding	0.140000	0.736318	
mm_119610.1	chr14	51105072	51105272	+	1	NA	NA	NA	9172	NM_201239	58809	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	0.020000	0.532338	
mm_25874.1	chr3	130180791	130180991	+	1	NA	NA	NA	46	NM_001244952	77018	Mm.91728	NM_029838	ENSMUSG00000058897	Col25a1	2700062B08Rik|CLAC-P	collagen, type XXV, alpha 1	protein-coding	0.105000	0.641791	-34(GGGTATTTAAGG,-,0.00)
mm_1817.1	chr1	82338982	82339182	+	1	NA	NA	NA	33	NM_001122685	76867	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	0.010000	0.527363	
mm_40614.1	chr5	64803269	64803469	+	1	NA	NA	NA	-154	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.100000	0.791045	
mm_141522.1	chr17	31729452	31729652	-	1	NA	NA	NA	51621	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.000000	0.378109	
mm_84036.1	chr9	57765708	57765908	-	1	NA	NA	NA	52	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.105000	0.656716	
mm_86976.1	chr10	25425800	25426000	+	1	NA	NA	NA	17532	NM_013511	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.000000	0.273632	
mm_84517.1	chr9	67036021	67036221	-	1	NA	NA	NA	7750	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.020000	0.572139	
mm_164779.1	chr18	4909103	4909303	+	1	NA	NA	NA	96717	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA	0.005000	0.462687	
mm_92436.1	chr10	77199234	77199434	-	1	NA	NA	NA	-32804	NM_009929	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.005000	0.502488	
mm_165244.1	chr2	67208372	67208572	+	1	NA	NA	NA	34638	NM_001033477	383709	Mm.244520	NM_001033477		Gm1322	-	predicted gene 1322	protein-coding	0.000000	0.348259	
mm_40123.1	chr5	34989553	34989753	+	1	NA	NA	NA	-9425	NM_001163512	71729	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.020000	0.442786	
mm_164333.1	chr16	10796264	10796464	+	1	NA	NA	NA	459	NM_013637	19118	Mm.42733	NM_013637	ENSMUSG00000022501	Prm1	Prm-1	protamine 1	protein-coding	0.030000	0.487562	
mm_91310.1	chr10	24921749	24921949	-	1	NA	NA	NA	5621	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.010000	0.467662	
mm_6707.1	chr1	82286723	82286923	-	1	NA	NA	NA	4616	NM_010570	16367	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.020000	0.527363	49(GCGTTTTTATGG,-,0.00),51(GTTTTTATGGTG,+,0.00)
mm_93501.1	chr10	112928793	112928993	-	1	NA	NA	NA	133	NM_001033474	382423	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132|ENSMUSG00000074747	ataxin 7-like 3B	protein-coding	0.160000	0.721393	
mm_56313.1	chr6	92214802	92215002	-	1	NA	NA	NA	-91	NM_030081	78287	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	0.115000	0.681592	
mm_87266.1	chr10	41528654	41528854	+	1	NA	NA	NA	9254	NM_016898	53599	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.020000	0.437811	
mm_82529.1	chr9	20667907	20668107	-	1	NA	NA	NA	15877	NM_023371	23988	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	0.010000	0.542289	
mm_53284.1	chr6	128914166	128914366	+	1	NA	NA	NA	17579	NR_106107	102465757		NR_106107	ENSMUSG00000098359	Mir7649	mmu-mir-7649	microRNA 7649	ncRNA	0.005000	0.412935	-34(CTGTATAAAAGA,-,0.00),50(CCTTTTAGACCA,+,0.00)
mm_168210.1	chr10	75860083	75860283	-	1	NA	NA	NA	67	NM_010798	17319	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor	protein-coding	0.085000	0.646766	
mm_135402.1	chr16	44703674	44703874	-	1	NA	NA	NA	-20527	NM_145972	212547	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	0.005000	0.462687	
mm_114672.1	chr13	80207555	80207755	+	1	NA	NA	NA	-675767	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.010000	0.393035	
mm_122156.1	chr14	31374165	31374365	-	1	NA	NA	NA	37541	NM_009796	12339	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.010000	0.477612	
mm_72703.1	chr8	84978521	84978721	+	1	NA	NA	NA	127	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.090000	0.666667	
mm_54418.1	chr6	32896950	32897150	-	1	NA	NA	NA	163102	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0.010000	0.452736	
mm_123638.1	chr14	68581985	68582185	-	1	NA	NA	NA	-13	NM_021475	58860	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0.010000	0.447761	
mm_80803.1	chr9	96268400	96268600	+	1	NA	NA	NA	9252	NM_001184710	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.015000	0.477612	
mm_38521.1	chr4	141423954	141424154	-	1	NA	NA	NA	3275	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.040000	0.611940	
mm_37663.1	chr4	129111712	129111912	-	1	NA	NA	NA	6264	NM_001290706	66260	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.015000	0.487562	
mm_91856.1	chr10	59322129	59322329	-	1	NA	NA	NA	-1067	NM_001316371	18451	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.010000	0.318408	-31(CACTATATAAGG,-,0.00)
mm_45570.1	chr5	73338465	73338665	-	1	NA	NA	NA	382	NM_026950	433904	Mm.274892	NM_026950	ENSMUSG00000029153	Ociad2	1810027I20Rik	OCIA domain containing 2	protein-coding	0.075000	0.641791	
mm_17368.1	chr2	26910448	26910648	-	1	NA	NA	NA	94	NM_011513	20933	Mm.397932	NM_011513	ENSMUSG00000015776	Med22	AW212655|AW558812|Surf-5|Surf5	mediator complex subunit 22	protein-coding	0.120000	0.701493	
mm_119641.1	chr14	51918324	51918524	+	1	NA	NA	NA	-337	NM_001128634	219038	Mm.296425	NM_001128634	ENSMUSG00000008813	Tppp2	Gm1790|Gm77	tubulin polymerization-promoting protein family member 2	protein-coding	0.010000	0.492537	81(GGCCAGAAAGGG,-,0.00)
mm_38889.1	chr4	149749336	149749536	-	1	NA	NA	NA	-11368	NM_177672	230917	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	0.010000	0.497512	
mm_77020.1	chr8	108584372	108584572	-	1	NA	NA	NA	205	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.015000	0.502488	
mm_159693.1	chr5	24393967	24394167	+	1	NA	NA	NA	-89	NM_029020	74610	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding	0.015000	0.442786	
mm_22439.1	chr2	181693476	181693676	-	1	NA	NA	NA	234	NM_001291206	56470	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0.070000	0.641791	
mm_31800.1	chr4	63998236	63998436	+	1	NA	NA	NA	48679	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding	0.000000	0.368159	
mm_136584.1	chr17	4880480	4880680	+	1	NA	NA	NA	-114494	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.060000	0.517413	
mm_45864.1	chr5	87929878	87930078	-	1	NA	NA	NA	4345	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.010000	0.467662	
mm_86963.1	chr10	25220914	25221114	+	1	NA	NA	NA	-20844	NM_001347460	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.000000	0.417910	-25(GTATTTAAAGCC,+,0.00)
mm_162035.1	chr19	55253262	55253462	+	1	NA	NA	NA	-7	NM_027976	433256	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.035000	0.547264	
mm_147663.1	chr18	60610001	60610201	-	1	NA	NA	NA	3	NM_001109975	104027	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	0.035000	0.537313	-39(CCATTTAAAAGG,+,0.00),-39(CCATTTAAAAGG,-,0.00)
mm_49734.1	chr6	34745575	34745775	+	1	NA	NA	NA	-34757	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.045000	0.512438	
mm_93427.1	chr10	108894800	108895000	-	1	NA	NA	NA	116075	NM_009306	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding	0.010000	0.452736	
mm_119062.1	chr14	30732780	30732980	+	1	NA	NA	NA	17265	NM_001166532	54650	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.000000	0.248756	
mm_124818.1	chr15	9071234	9071434	+	1	NA	NA	NA	74	NM_001040395	68646	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.105000	0.716418	
mm_159500.1	chr4	43700708	43700908	-	1	NA	NA	NA	-1	NM_019485	56014	Mm.331571	NM_019485	ENSMUSG00000050215	Olfr70	MOR262-10|mOR6	olfactory receptor 70	protein-coding	0.010000	0.512438	
mm_159992.1	chr6	116134464	116134664	-	1	NA	NA	NA	58810	NM_177412	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.000000	0.238806	
mm_131995.1	chr16	25059271	25059471	+	1	NA	NA	NA	-268	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.060000	0.601990	
mm_3971.1	chr1	164192948	164193148	+	1	NA	NA	NA	-40831	NR_037987	100503816	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	0.005000	0.422886	
mm_161038.1	chr12	30132543	30132743	-	1	NA	NA	NA	-19	NM_009417	22018	Mm.4991	NM_009417	ENSMUSG00000020673	Tpo	-	thyroid peroxidase	protein-coding	0.015000	0.467662	-30(CCATTTATACAG,+,0.00)
mm_111590.1	chr12	101975671	101975871	-	1	NA	NA	NA	-203	NM_016856	51786	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.105000	0.616915	
mm_120629.1	chr14	70466361	70466561	+	1	NA	NA	NA	8944	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.025000	0.437811	
mm_107635.1	chr12	52097656	52097856	+	1	NA	NA	NA	10	NM_029760	76826	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	0.095000	0.661692	
mm_43916.1	chr5	144556478	144556678	+	1	NA	NA	NA	10691	NM_016789	53324	Mm.10099	NM_016789	ENSMUSG00000059991	Nptx2	Narp|np2	neuronal pentraxin 2	protein-coding	0.015000	0.507463	
mm_7480.1	chr1	120517522	120517722	-	1	NA	NA	NA	-12538	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.015000	0.442786	
mm_27274.1	chr3	40746345	40746545	-	1	NA	NA	NA	832	NM_011020	18415	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0.025000	0.417910	
mm_118602.1	chr14	20707486	20707686	+	1	NA	NA	NA	34	NM_001252082	268721	Mm.275082	NM_027996	ENSMUSG00000021819	Zswim8	2310021P13Rik|4832404P21Rik|Kiaa0913|mKIAA0913	zinc finger SWIM-type containing 8	protein-coding	0.125000	0.731343	
mm_67342.1	chr7	79822083	79822283	-	1	NA	NA	NA	11456	NM_008589	17293	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0.005000	0.517413	
mm_20702.1	chr2	132945643	132945843	-	1	NA	NA	NA	293	NM_198029	241639	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0.035000	0.606965	
mm_108497.1	chr12	83731481	83731681	+	1	NA	NA	NA	-32053	NM_001205343	170721	Mm.133443	NM_130887	ENSMUSG00000021223	Papln	E030033C16Rik	papilin, proteoglycan-like sulfated glycoprotein	protein-coding	0.000000	0.437811	
mm_86182.1	chr9	119209003	119209203	-	1	NA	NA	NA	2	NM_133980	102570	Mm.38775	NM_133980	ENSMUSG00000074028	Slc22a13	AI648912|OCTL1|OCTL3|ORCTL3	solute carrier family 22 (organic cation transporter), member 13	protein-coding	0.010000	0.482587	-5(GCCTTTATACCT,+,0.00)
mm_83738.1	chr9	51101685	51101885	-	1	NA	NA	NA	293	NM_177702	235345	Mm.72828	NM_177702	ENSMUSG00000032057	4833427G06Rik	-	RIKEN cDNA 4833427G06 gene	protein-coding	0.045000	0.557214	
mm_43542.1	chr5	137527184	137527384	+	1	NA	NA	NA	2310	NR_105846	102465227		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0.005000	0.467662	
mm_150647.1	chr19	41911785	41911985	+	1	NA	NA	NA	14	NM_023418	18648	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	0.140000	0.696517	
mm_58523.1	chr7	4147232	4147432	+	1	NA	NA	NA	2540	NM_175529	243813	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.045000	0.522388	
mm_28055.1	chr3	84191130	84191330	-	1	NA	NA	NA	16592	NR_036654	624713	Mm.442604	NR_036654		Gm6525	EG624713	ribosomal protein L36a pseudogene	pseudo	0.040000	0.626866	
mm_164405.1	chr16	35568063	35568263	+	1	NA	NA	NA	26801	NM_013661	20357	Mm.42015	NM_013661	ENSMUSG00000052133	Sema5b	AI893641|SemG|Semag|mKIAA1445	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	protein-coding	0.025000	0.427861	
mm_62852.1	chr7	114415281	114415481	+	1	NA	NA	NA	127	NM_011055	18576	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0.165000	0.766169	
mm_34350.1	chr4	144529316	144529516	+	1	NA	NA	NA	9594	NM_198662	381572	Mm.184290	NM_198662	ENSMUSG00000028593	9430007A20Rik	Aadacl4|Gm1034	RIKEN cDNA 9430007A20 gene	protein-coding	0.000000	0.298507	
mm_82125.1	chr9	123509129	123509329	+	1	NA	NA	NA	-20653	NM_030692	83493	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.005000	0.452736	
mm_129235.1	chr15	76617021	76617221	-	1	NA	NA	NA	-269	NM_028064	72027	Mm.276829	NM_028064	ENSMUSG00000063354	Slc39a4	1600025H15Rik|AU041686|AWMS2|ZIP4	solute carrier family 39 (zinc transporter), member 4	protein-coding	0.025000	0.522388	
mm_101351.1	chr11	23739658	23739858	-	1	NA	NA	NA	31212	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.005000	0.452736	
mm_4351.1	chr1	171896832	171897032	+	1	NA	NA	NA	-20530	NM_001347187	30925	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	0.000000	0.417910	76(CCTTAACTAGCC,+,0.00)
mm_8615.1	chr1	156036292	156036492	-	1	NA	NA	NA	88	NM_144791	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.080000	0.696517	
mm_15141.1	chr2	153974722	153974922	+	1	NA	NA	NA	-123	NM_001080811	545477	Mm.379973	NM_001080811	ENSMUSG00000078998	Bpifa6	EG545477|Gm5840|Splunc6	BPI fold containing family A, member 6	protein-coding	0.010000	0.522388	
mm_115415.1	chr13	115089376	115089576	+	1	NA	NA	NA	682	NM_134058	105083	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota homolog (Drosophila)	protein-coding	0.055000	0.631841	
mm_16336.1	chr2	174329983	174330183	+	1	NA	NA	NA	-6	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.165000	0.810945	
mm_21092.1	chr2	153191429	153191629	-	1	NA	NA	NA	30228	NM_133847	99237	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.005000	0.492537	-57(GCTTTTAGACTC,+,0.00)
mm_16649.1	chr2	6256186	6256386	-	1	NA	NA	NA	-43292	NM_024208	67856	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0.025000	0.562189	
mm_124309.1	chr14	103099466	103099666	-	1	NA	NA	NA	0	NM_001347600	50789	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.150000	0.751244	
mm_28830.1	chr3	96414732	96414932	-	1	NA	NA	NA	1	NR_001579	21748		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	0.060000	0.572139	-35(GGGTATTTAAGG,-,0.00)
mm_43348.1	chr5	135168262	135168462	+	1	NA	NA	NA	-10	NM_009745	12054	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	0.165000	0.776119	
mm_68305.1	chr7	105746509	105746709	-	1	NA	NA	NA	-2271	NM_020024	24075	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	0.015000	0.532338	
mm_163505.1	chr12	113140496	113140696	+	1	NA	NA	NA	-9	NM_001347443	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.120000	0.696517	
mm_157148.1	chrX	9461769	9461969	-	1	NA	NA	NA	7455	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.417910	
mm_30312.1	chr3	151730965	151731165	-	1	NA	NA	NA	18894	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.005000	0.368159	
mm_36324.1	chr4	70378141	70378341	-	1	NA	NA	NA	32194	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.015000	0.407960	
mm_10539.1	chr2	16458784	16458984	+	1	NA	NA	NA	102580	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.010000	0.368159	
mm_141885.1	chr17	34860766	34860966	-	1	NA	NA	NA	1648	NM_001142706	14962	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0.025000	0.537313	
mm_119321.1	chr14	37067919	37068119	+	1	NA	NA	NA	-30	NM_173418	239038	Mm.134302	NM_173418	ENSMUSG00000043418	Lrit2	A930010E21Rik|Lrrc22	leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	protein-coding	0.005000	0.442786	
mm_125169.1	chr15	31336920	31337120	+	1	NA	NA	NA	30739	NM_001164441	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.015000	0.562189	
mm_101661.1	chr11	36677826	36678026	-	1	NA	NA	NA	266315	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.035000	0.552239	
mm_124805.1	chr15	8832186	8832386	+	1	NA	NA	NA	-121479	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.010000	0.512438	
mm_171750.1	chr5	101888015	101888215	-	1	NA	NA	NA	122985	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.040000	0.492537	
mm_108266.1	chr12	78748793	78748993	+	1	NA	NA	NA	-54	NM_019579	56217	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	0.155000	0.776119	
mm_126457.1	chr15	80931205	80931405	+	1	NA	NA	NA	-8734	NR_039573	100628612		NR_039573	ENSMUSG00000092868	Mir5113	mir-5113|mmu-mir-5113|mu-mir-5113	microRNA 5113	ncRNA	0.070000	0.542289	
mm_154350.1	chrM	5723	5923	+	1	NA	NA	NA	NA	NA									0.015000	0.398010	
mm_91915.1	chr10	60299059	60299259	-	1	NA	NA	NA	14698	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.010000	0.522388	
mm_50033.1	chr6	41134996	41135196	+	1	NA	NA	NA	-99587	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.497512	
mm_76845.1	chr8	105295841	105296041	-	1	NA	NA	NA	157	NM_177788	277978	Mm.40228	NM_177788	ENSMUSG00000043251	Exoc3l	C730015A04Rik|Exoc3l1	exocyst complex component 3-like	protein-coding	0.025000	0.572139	
mm_33756.1	chr4	134343400	134343600	+	1	NA	NA	NA	34	NM_001346578	230810	Mm.358876	NM_001039677	ENSMUSG00000028836	Slc30a2	ZnT-2|Znt2	solute carrier family 30 (zinc transporter), member 2	protein-coding	0.065000	0.636816	
mm_71193.1	chr8	40875536	40875736	+	1	NA	NA	NA	13269	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.015000	0.373134	
mm_108772.1	chr12	89812353	89812553	+	1	NA	NA	NA	-30	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.055000	0.577114	
mm_73249.1	chr8	104295632	104295832	+	1	NA	NA	NA	-2551	NM_027022	73381	Mm.272746	NM_027022	ENSMUSG00000074127	Cmtm2a	1700001K04Rik|1700041N15Rik|1700063K20Rik|AI449770|ARR19|C32|CKLF3|CKLF4|CKLF5|Cklf|Cklf1|Cklfsf2-1b|Cklfsf2a|UCK-1	CKLF-like MARVEL transmembrane domain containing 2A	protein-coding	0.010000	0.542289	
mm_26459.1	chr3	143017035	143017235	+	1	NA	NA	NA	-135131	NM_178654	109333	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	0.000000	0.402985	
mm_10213.1	chr2	5845177	5845377	+	1	NA	NA	NA	243	NM_016918	53893	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	0.050000	0.562189	
mm_111490.1	chr12	98901385	98901585	-	1	NA	NA	NA	-1	NM_001081191	319670	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	0.125000	0.776119	
mm_147534.1	chr18	53417884	53418084	-	1	NA	NA	NA	23	NM_008908	19038	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding	0.100000	0.711443	
mm_49438.1	chr6	29313424	29313624	+	1	NA	NA	NA	-5616	NM_001289663	330277	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	0.000000	0.398010	
mm_110577.1	chr12	56497631	56497831	-	1	NA	NA	NA	31689	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.000000	0.373134	
mm_73094.1	chr8	94555880	94556080	+	1	NA	NA	NA	22952	NM_153507	234577	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0.005000	0.552239	
mm_169123.1	chr13	52359293	52359493	-	1	NA	NA	NA	171443	NM_001024474	68203	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0.020000	0.512438	-17(CCTTTTATAAGG,+,0.00),-17(CCTTTTATAAGG,-,0.00)
mm_84392.1	chr9	65512613	65512813	-	1	NA	NA	NA	51776	NM_138584	27965	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	spastic paraplegia 21 homolog (human)	protein-coding	0.010000	0.572139	
mm_41752.1	chr5	102845182	102845382	+	1	NA	NA	NA	275	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.055000	0.651741	
mm_159598.1	chr4	126923017	126923217	-	1	NA	NA	NA	44806	NM_001114399	67785	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0.025000	0.447761	
mm_1109.1	chr1	59764215	59764415	+	1	NA	NA	NA	36	NM_007561	12168	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0.035000	0.552239	
mm_169780.1	chr16	11144027	11144227	+	1	NA	NA	NA	-9595	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.175000	0.771144	
mm_87321.1	chr10	42860587	42860787	+	1	NA	NA	NA	175	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.045000	0.522388	
mm_110567.1	chr12	55821102	55821302	-	1	NA	NA	NA	314	NM_019994	56784	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0.075000	0.562189	
mm_116410.1	chr13	41473467	41473667	-	1	NA	NA	NA	13793	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.020000	0.402985	
mm_29538.1	chr3	116711734	116711934	-	1	NA	NA	NA	446	NM_144902	229782	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	0.065000	0.666667	
mm_4336.1	chr1	171855818	171856018	+	1	NA	NA	NA	16221	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.000000	0.467662	
mm_118336.1	chr13	114156897	114157097	-	1	NA	NA	NA	-5405	NR_045836	319803	Mm.386896	NM_177004		A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	0.020000	0.497512	
mm_130159.1	chr15	91191919	91192119	-	1	NA	NA	NA	-212	NM_011994	26874	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.015000	0.432836	
mm_79936.1	chr9	65890431	65890631	+	1	NA	NA	NA	208	NM_026515	68026	Mm.351273	NM_026515	ENSMUSG00000040204	Pclaf	2810417H13Rik|AA409629|Ns5apt9|Ns5atp9|PAF15|Paf|mKIAA0101|p15(PAF)	PCNA clamp associated factor	protein-coding	0.030000	0.582090	
mm_139471.1	chr17	55970496	55970696	+	1	NA	NA	NA	114	NM_009168	20420	Mm.20908	NM_009168	ENSMUSG00000039154	Shd	AI413439	src homology 2 domain-containing transforming protein D	protein-coding	0.100000	0.716418	
mm_71428.1	chr8	46492695	46492895	+	1	NA	NA	NA	1829	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.025000	0.477612	
mm_104114.1	chr11	86726352	86726552	-	1	NA	NA	NA	31040	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.015000	0.432836	
mm_44256.1	chr5	5478969	5479169	-	1	NA	NA	NA	74	NM_001200025	381716	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding	0.015000	0.542289	
mm_170905.1	chr2	30130962	30131162	-	1	NA	NA	NA	-2684	NM_146252	70296	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0.035000	0.482587	-34(CTTTAAATACCC,+,0.00)
mm_80749.1	chr9	95162832	95163032	+	1	NA	NA	NA	244338	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.005000	0.407960	75(CTCCAGAAAAGG,-,0.00)
mm_159840.1	chr5	134609015	134609215	-	1	NA	NA	NA	5910	NM_022964	56743	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0.030000	0.507463	
mm_32244.1	chr4	102511104	102511304	+	1	NA	NA	NA	-58856	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.015000	0.412935	
mm_96931.1	chr11	70519072	70519272	+	1	NA	NA	NA	-37	NM_146020	216871	Mm.22551	NM_146020	ENSMUSG00000046811	Gltpd2	C730027E14Rik	glycolipid transfer protein domain containing 2	protein-coding	0.020000	0.542289	
mm_41386.1	chr5	90768419	90768619	+	1	NA	NA	NA	1	NM_023785	57349	Mm.293614	NM_023785	ENSMUSG00000029372	Ppbp	2400003M24Rik|AI854500|CTAP3|CTAPIII|Cxcl7|LA-PF4|LDGF|MDGF|NAP-2|NAP-2-L1|Scyb7|TGB|TGB1|THBGB1|b-TG1|beta-TG	pro-platelet basic protein	protein-coding	0.010000	0.507463	-88(CCTTTTATGGTT,+,0.00),-34(CAGTATAAAAAG,-,0.00),-12(GCATATAAAGCA,+,0.00)
mm_158761.1	chrX	166498765	166498965	-	1	NA	NA	NA	11613	NM_001007577	245695	Mm.336318	NM_001007577	ENSMUSG00000051224	Tceanc	A630018P17Rik|Gm390	transcription elongation factor A (SII) N-terminal and central domain containing	protein-coding	0.005000	0.388060	40(GCCCTTATAGGA,-,0.00),42(CCTTATAGGAGC,+,0.00)
mm_21189.1	chr2	155357312	155357512	-	1	NA	NA	NA	12	NM_001004721	228812	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	0.075000	0.611940	
mm_34009.1	chr4	137992926	137993126	+	1	NA	NA	NA	-430	NM_001256198	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.095000	0.597015	
mm_34762.1	chr4	152353498	152353698	+	1	NA	NA	NA	14947	NM_001081376	269610	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding	0.035000	0.537313	
mm_116864.1	chr13	54930138	54930338	-	1	NA	NA	NA	-19173	NM_001311128	107448	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	0.015000	0.577114	
mm_165387.1	chr2	131103450	131103650	+	1	NA	NA	NA	-16785	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.010000	0.472637	
mm_135551.1	chr16	49847562	49847762	-	1	NA	NA	NA	-7992	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.000000	0.492537	
mm_55471.1	chr6	68769028	68769228	-	1	NA	NA	NA	558046	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.383085	-39(TGCTTTAAAGAG,-,0.00)
mm_14689.1	chr2	140589434	140589634	+	1	NA	NA	NA	81942	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.010000	0.288557	
mm_144917.1	chr18	37518250	37518450	+	1	NA	NA	NA	-3	NM_053147	93893	Mm.348054	NM_053147	ENSMUSG00000073591	Pcdhb22	Pcdhb15|PcdhbV	protocadherin beta 22	protein-coding	0.020000	0.437811	
mm_20368.1	chr2	128422130	128422330	-	1	NA	NA	NA	7121	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.015000	0.477612	
mm_152451.1	chr19	10829954	10830154	-	1	NA	NA	NA	4	NM_001037801	12511	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.010000	0.572139	
mm_93116.1	chr10	91138329	91138529	-	1	NA	NA	NA	-14466	NM_133668	18674	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.010000	0.517413	
mm_144962.1	chr18	37821423	37821623	+	1	NA	NA	NA	1977	NM_033583	93708	Mm.247203	NM_033583	ENSMUSG00000102543	Pcdhgc5	-	protocadherin gamma subfamily C, 5	protein-coding	0.025000	0.567164	
mm_168059.1	chr10	100212420	100212620	+	1	NA	NA	NA	-123156	NM_001166636	100043247	Mm.478257	NM_001166636	ENSMUSG00000096640	Gm4312	-	predicted gene 4312	protein-coding	0.020000	0.472637	-21(CTTTTAAAATCC,+,0.00)
mm_157935.1	chrX	83487686	83487886	-	1	NA	NA	NA	138	NM_021898	100502723	Mm.383210	NM_021898	ENSMUSG00000035522	Tsga8	Halap-X|Halapx	testis specific gene A8	protein-coding	0.050000	0.507463	
mm_100022.1	chr11	114903388	114903588	+	1	NA	NA	NA	13447	NM_170758	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.010000	0.512438	
mm_147668.1	chr18	60624124	60624324	-	1	NA	NA	NA	81	NM_177340	104027	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	0.115000	0.766169	
mm_52595.1	chr6	116970884	116971084	+	1	NA	NA	NA	-197551	NM_001012477	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.015000	0.487562	
mm_43198.1	chr5	129020380	129020580	+	1	NA	NA	NA	324	NM_009391	19384	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	0.135000	0.741294	
mm_81573.1	chr9	110421628	110421828	+	1	NA	NA	NA	1920	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.015000	0.542289	
mm_73211.1	chr8	95715817	95716017	+	1	NA	NA	NA	4	NM_001035123	66083	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	0.145000	0.726368	
mm_64055.1	chr7	140847675	140847875	+	1	NA	NA	NA	-141	NM_027019	69287	Mm.56404	NM_027019	ENSMUSG00000025482	Odf3	1700011O04Rik|SHIPPO1	outer dense fiber of sperm tails 3	protein-coding	0.000000	0.532338	63(TCCTTTTTAGGG,-,0.00),65(CTTTTTAGGGAG,+,0.00)
mm_42020.1	chr5	108269330	108269530	+	1	NA	NA	NA	533	NM_026106	13486	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0.010000	0.567164	
mm_118239.1	chr13	111771054	111771254	-	1	NA	NA	NA	37829	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.000000	0.358209	
mm_15608.1	chr2	160732537	160732737	+	1	NA	NA	NA	1327	NM_021280	18803	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.010000	0.477612	
mm_89909.1	chr10	111167506	111167706	+	1	NA	NA	NA	2804	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.005000	0.437811	
mm_4156.1	chr1	171025486	171025686	+	1	NA	NA	NA	6660	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.010000	0.437811	
mm_51764.1	chr6	87913856	87914056	+	1	NA	NA	NA	-20	NM_173737	232210	Mm.246241	NM_173737	ENSMUSG00000030060	Hmces	8430410A17Rik|C85376	5-hydroxymethylcytosine (hmC) binding, ES cell specific	protein-coding	0.115000	0.696517	
mm_35855.1	chr4	49446203	49446403	-	1	NA	NA	NA	4806	NM_001164565	230161	Mm.30101	NM_001164565	ENSMUSG00000070985	Acnat1	AI132189	acyl-coenzyme A amino acid N-acyltransferase 1	protein-coding	0.010000	0.507463	
mm_71905.1	chr8	70072895	70073095	+	1	NA	NA	NA	71	NM_181540	107770	Mm.37974	NM_181540	ENSMUSG00000036151	Tm6sf2	-	transmembrane 6 superfamily member 2	protein-coding	0.075000	0.656716	
mm_37817.1	chr4	131821547	131821747	-	1	NA	NA	NA	16631	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	0.015000	0.606965	
mm_133288.1	chr16	77466038	77466238	+	1	NA	NA	NA	-132798	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.010000	0.487562	
mm_33089.1	chr4	124695732	124695932	+	1	NA	NA	NA	-2278	NM_026031	67205	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11l	2700082D03Rik|CGI-94|Cgi94|Utp11	UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	protein-coding	0.035000	0.487562	
mm_14677.1	chr2	139579373	139579573	+	1	NA	NA	NA	85553	NM_175467	228677	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	0.005000	0.343284	
mm_142128.1	chr17	35900631	35900831	-	1	NA	NA	NA	-3353	NM_001033630	69662	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	0.000000	0.477612	
mm_24080.1	chr3	87948596	87948796	+	1	NA	NA	NA	3	NM_007759	12904	Mm.4757	NM_007759	ENSMUSG00000004885	Crabp2	AI893628|Crabp-2|CrabpII	cellular retinoic acid binding protein II	protein-coding	0.045000	0.616915	-33(GGGTATAAAAGC,-,0.00)
mm_126499.1	chr15	81745054	81745254	+	1	NA	NA	NA	306	NM_001081016	20286	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	0.100000	0.656716	
mm_131973.1	chr16	24951176	24951376	+	1	NA	NA	NA	-108363	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.005000	0.313433	-82(TCTCTAATAGCC,+,0.00)
mm_54457.1	chr6	34824357	34824557	-	1	NA	NA	NA	-38689	NM_197986	68487	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.000000	0.378109	
mm_16285.1	chr2	174097611	174097811	+	1	NA	NA	NA	-12640	NM_213733	228961	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	0.010000	0.417910	
mm_68625.1	chr7	118126488	118126688	-	1	NA	NA	NA	3037	NM_019419	54208	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0.030000	0.502488	
mm_75350.1	chr8	43699398	43699598	-	1	NA	NA	NA	-7	NM_001079931	384814	Mm.491652	NM_001079931		Gm5347	EG384814	predicted gene 5347	protein-coding	0.000000	0.422886	
mm_18425.1	chr2	60752844	60753044	-	1	NA	NA	NA	-30341	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.010000	0.358209	
mm_132633.1	chr16	39026092	39026292	+	1	NA	NA	NA	123847	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.015000	0.512438	
mm_87308.1	chr10	42700628	42700828	+	1	NA	NA	NA	21812	NM_172416	14628	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0.005000	0.323383	
mm_81697.1	chr9	111205646	111205846	+	1	NA	NA	NA	65862	NM_026810	17350	Mm.486383	NM_026810	ENSMUSG00000032498	Mlh1	1110035C23Rik|AI317206|AI325952|AI561766	mutL homolog 1	protein-coding	0.030000	0.467662	
mm_129624.1	chr15	80091731	80091931	-	1	NA	NA	NA	497	NM_207708	20972	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0.065000	0.557214	86(CCCTAGAAAAAG,-,0.00)
mm_100542.1	chr11	120673281	120673481	+	1	NA	NA	NA	408	NM_026877	68938	Mm.294020	NM_026877	ENSMUSG00000025142	Aspscr1	1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG	alveolar soft part sarcoma chromosome region, candidate 1 (human)	protein-coding	0.095000	0.681592	
mm_68251.1	chr7	105569199	105569399	-	1	NA	NA	NA	19	NM_001253887	11785	Mm.38469	NM_009685	ENSMUSG00000037032	Apbb1	Fe65|Rir	amyloid beta (A4) precursor protein-binding, family B, member 1	protein-coding	0.025000	0.616915	
mm_52923.1	chr6	122882803	122883003	+	1	NA	NA	NA	8346	NM_026267	67602	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0.015000	0.532338	
mm_31058.1	chr4	41275392	41275592	+	1	NA	NA	NA	-357	NM_026872	68926	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0.055000	0.517413	
mm_9858.1	chr1	184811087	184811287	-	1	NA	NA	NA	113	NM_001290273	66112	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	0.060000	0.646766	
mm_141882.1	chr17	34860219	34860419	-	1	NA	NA	NA	2195	NM_001142706	14962	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0.015000	0.517413	70(CCTTATCTGGAC,+,0.00)
mm_3961.1	chr1	164135573	164135773	+	1	NA	NA	NA	-16162	NM_007976	14067	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	0.020000	0.522388	
mm_16771.1	chr2	9879500	9879700	-	1	NA	NA	NA	-1000	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.050000	0.616915	
mm_81030.1	chr9	104569578	104569778	+	1	NA	NA	NA	-110	NM_028719	74020	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	0.025000	0.606965	
mm_74086.1	chr8	122550575	122550775	+	1	NA	NA	NA	654	NM_001037298	234839	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	0.055000	0.532338	
mm_52803.1	chr6	121342362	121342562	+	1	NA	NA	NA	-614	NM_001347433	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.010000	0.557214	
mm_155246.1	chrX	57223546	57223746	+	1	NA	NA	NA	11503	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.005000	0.487562	
mm_69002.1	chr7	126700288	126700488	-	1	NA	NA	NA	3832	NM_001301374	12721	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.035000	0.641791	
mm_33604.1	chr4	132579450	132579650	+	1	NA	NA	NA	15483	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.020000	0.482587	
mm_24752.1	chr3	95320382	95320582	+	1	NA	NA	NA	1652	NM_001320492	76893	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.010000	0.522388	
mm_155641.1	chrX	85249614	85249814	+	1	NA	NA	NA	37	NM_028046	71996	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	0.015000	0.517413	
mm_156477.1	chrX	143784134	143784334	+	1	NA	NA	NA	43178	NM_007603	12338	Mm.30290	NM_007603	ENSMUSG00000067276	Capn6	-	calpain 6	protein-coding	0.005000	0.293532	
mm_172446.1	chr7	30195128	30195328	-	1	NA	NA	NA	-180	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.050000	0.522388	
mm_36347.1	chr4	73790923	73791123	-	1	NA	NA	NA	-221	NR_046042	667768	Mm.244966	NR_046041	ENSMUSG00000085034	Gm11240	OTTMUSG00000000286	predicted gene 11240	ncRNA	0.140000	0.761194	
mm_3768.1	chr1	156310625	156310825	+	1	NA	NA	NA	6	NM_130456	170484	Mm.289099	NM_130456	ENSMUSG00000026602	Nphs2	PDCN|SRN1	nephrosis 2, podocin	protein-coding	0.050000	0.651741	
mm_22437.1	chr2	181691718	181691918	-	1	NA	NA	NA	-1	NM_001291205	56470	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0.015000	0.517413	
mm_122949.1	chr14	54966505	54966705	-	1	NA	NA	NA	2	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.005000	0.572139	-4(GGATATAAAGGG,-,0.00)
mm_38879.1	chr4	149698508	149698708	-	1	NA	NA	NA	100	NM_001164050	18707	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol 3-kinase catalytic delta polypeptide	protein-coding	0.060000	0.592040	
mm_36822.1	chr4	105109638	105109838	-	1	NA	NA	NA	160	NM_178143	108079	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding	0.130000	0.721393	
mm_80699.1	chr9	92222187	92222387	+	1	NA	NA	NA	-27907	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.010000	0.402985	
mm_167026.1	chr7	67373069	67373269	+	1	NA	NA	NA	-311	NM_001291195	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.065000	0.611940	
mm_170422.1	chr18	70647975	70648175	-	1	NA	NA	NA	79783	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.045000	0.417910	-29(GGATATTAAAAG,-,0.00),70(TACTTTAAAAGA,-,0.00)
mm_63252.1	chr7	126623150	126623350	+	1	NA	NA	NA	2220	NM_019738	56312	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	0.020000	0.517413	
mm_95642.1	chr11	53719985	53720185	+	1	NA	NA	NA	-709	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.005000	0.378109	
mm_149449.1	chr19	11485909	11486109	+	1	NA	NA	NA	-6029	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.005000	0.442786	-35(GGGTTTAAATAG,-,0.00)
mm_140485.1	chr17	3115658	3115858	-	1	NA	NA	NA	786	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.050000	0.592040	
mm_171090.1	chr3	127692362	127692562	-	1	NA	NA	NA	59317	NM_009718	11924	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	0.025000	0.502488	
mm_61435.1	chr7	74220082	74220282	+	1	NA	NA	NA	-206500	NM_009181	20450	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0.000000	0.393035	
mm_112148.1	chr12	113259878	113260078	-	1	NA	NA	NA	74075	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.030000	0.547264	
mm_138508.1	chr17	35236482	35236682	+	1	NA	NA	NA	-14	NM_023179	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.045000	0.616915	
mm_47234.1	chr5	121445299	121445499	-	1	NA	NA	NA	7075	NM_026129	67397	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	0.025000	0.601990	
mm_24500.1	chr3	92417984	92418184	+	1	NA	NA	NA	-3	NR_003185	20764	Mm.57084	NR_003185	ENSMUSG00000027925	Sprr2j-ps	Sprr2j	small proline-rich protein 2J, pseudogene	pseudo	0.010000	0.417910	15(TTCTATAAAGAG,-,0.00)
mm_49395.1	chr6	28423436	28423636	+	1	NA	NA	NA	-104	NM_007480	11844	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	0.140000	0.796020	
mm_14987.1	chr2	152226724	152226924	+	1	NA	NA	NA	-16	NM_007788	12995	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0.100000	0.701493	
mm_116841.1	chr13	54688174	54688374	-	1	NA	NA	NA	-74	NM_001146027	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.075000	0.587065	50(CTGTTTAAAGGC,-,0.00)
mm_140068.1	chr17	75005385	75005585	+	1	NA	NA	NA	-44	NM_019919	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.060000	0.567164	36(CTTTTAAAAGAC,+,0.00)
mm_29180.1	chr3	106528161	106528361	-	1	NA	NA	NA	-19537	NM_001286986	67171	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0.005000	0.353234	
mm_54224.1	chr6	27810051	27810251	-	1	NA	NA	NA	126599	NR_030420	735266		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA	0.025000	0.497512	
mm_28085.1	chr3	84913461	84913661	-	1	NA	NA	NA	-38650	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.050000	0.517413	
mm_57266.1	chr6	123286387	123286587	-	1	NA	NA	NA	3384	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.010000	0.442786	
mm_21559.1	chr2	164182526	164182726	-	1	NA	NA	NA	116	NM_145369	209232	Mm.218273	NM_145369	ENSMUSG00000040154	Wfdc5	BC019734|Prg5|Wap1	WAP four-disulfide core domain 5	protein-coding	0.005000	0.527363	
mm_135347.1	chr16	43664015	43664215	-	1	NA	NA	NA	69	NM_001146325	100043314	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	ENSMUSG00000071552|Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0.010000	0.537313	
mm_171456.1	chr4	145514767	145514967	+	1	NA	NA	NA	4108	NM_001324553	101056073	Mm.276881	NM_001324553	ENSMUSG00000078503	LOC101056073	-	zinc finger protein 501-like	protein-coding	0.005000	0.502488	
mm_73932.1	chr8	119947617	119947817	+	1	NA	NA	NA	37357	NM_001310630	22224	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	0.025000	0.422886	-78(CCTTTTAGAAAA,+,0.00)
mm_72151.1	chr8	72144573	72144773	+	1	NA	NA	NA	9381	NM_001001491	326618	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	0.025000	0.532338	
mm_10924.1	chr2	25428565	25428765	+	1	NA	NA	NA	-9	NM_007379	11305	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	0.180000	0.810945	-100(GCCTTTAAGTGG,-,0.00)
mm_45292.1	chr5	65019168	65019368	-	1	NA	NA	NA	48950	NR_030577	100124451		NR_030577	ENSMUSG00000077042	Mir574	Mirn574|mir-574|mmu-mir-574	microRNA 574	ncRNA	0.030000	0.507463	35(CATTTTAAAGAC,+,0.00)
mm_27530.1	chr3	57501666	57501866	-	1	NA	NA	NA	74110	NM_133784	97064	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0.025000	0.527363	
mm_114006.1	chr13	52596786	52596986	+	1	NA	NA	NA	4	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.000000	0.492537	
mm_85720.1	chr9	108275011	108275211	-	1	NA	NA	NA	-11153	NM_001276486	13138	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	0.000000	0.482587	
mm_73461.1	chr8	106653490	106653690	+	1	NA	NA	NA	-29478	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.020000	0.522388	
mm_164580.1	chr17	25317473	25317673	+	1	NA	NA	NA	-1081	NM_053260	114662	Mm.207082	NM_053260	ENSMUSG00000034039	Prss29	D19363|Isp2|mISP-2	protease, serine 29	protein-coding	0.015000	0.497512	
mm_65230.1	chr7	19717402	19717602	-	1	NA	NA	NA	-2073	NM_016871	53333	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40 homolog (yeast)	protein-coding	0.010000	0.532338	
mm_111821.1	chr12	106634414	106634614	-	1	NA	NA	NA	81810	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.005000	0.437811	
mm_166491.1	chr5	149587886	149588086	+	1	NA	NA	NA	48329	NM_013559	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.020000	0.572139	
mm_32712.1	chr4	116151363	116151563	+	1	NA	NA	NA	32	NM_001290658	68273	Mm.196045	NM_026651	ENSMUSG00000028700	Pomgnt1	0610016I07Rik|4930467B06Rik	protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase	protein-coding	0.020000	0.542289	
mm_90437.1	chr10	127642940	127643140	+	1	NA	NA	NA	54	NM_009284	20852	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.080000	0.616915	
mm_42102.1	chr5	110467148	110467348	+	1	NA	NA	NA	-18745	NM_001142642	381668	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.000000	0.577114	-26(CCCTATAAAAAG,-,0.00)
mm_61124.1	chr7	55794082	55794282	+	1	NA	NA	NA	34	NM_146190	233276	Mm.284306	NM_146190	ENSMUSG00000033790	Tubgcp5	B130010C12Rik|GCP5|mKIAA1899	tubulin, gamma complex associated protein 5	protein-coding	0.110000	0.636816	
mm_20461.1	chr2	129367137	129367337	-	1	NA	NA	NA	-2665	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.015000	0.452736	20(CCCTTTCTGGCC,+,0.00)
mm_16937.1	chr2	14059807	14060007	-	1	NA	NA	NA	-3872	NM_013935	30963	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	0.020000	0.477612	
mm_114306.1	chr13	59656475	59656675	+	1	NA	NA	NA	19209	NM_001035122	105348	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0.015000	0.557214	
mm_51625.1	chr6	85451893	85452093	+	1	NA	NA	NA	-23	NR_028081	73327	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	0.090000	0.641791	
mm_65358.1	chr7	25000594	25000794	-	1	NA	NA	NA	5243	NM_001290469	232975	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.030000	0.582090	
mm_50062.1	chr6	41188103	41188303	+	1	NA	NA	NA	-114069	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.005000	0.472637	
mm_104340.1	chr11	94180231	94180431	-	1	NA	NA	NA	-31123	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.005000	0.452736	
mm_92282.1	chr10	71285159	71285359	-	1	NA	NA	NA	3	NM_145420	216080	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	0.150000	0.761194	
mm_25501.1	chr3	109507718	109507918	+	1	NA	NA	NA	-66189	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.005000	0.303483	
mm_55975.1	chr6	85867330	85867530	-	1	NA	NA	NA	1707	NM_053096	93673	Mm.24251	NM_053096	ENSMUSG00000033634	Nat8f2	Cml2	N-acetyltransferase 8 (GCN5-related) family member 2	protein-coding	0.000000	0.358209	
mm_111970.1	chr12	109948237	109948437	-	1	NA	NA	NA	200459	NR_037233	100499517		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	0.015000	0.467662	
mm_104777.1	chr11	98545936	98546136	-	1	NA	NA	NA	-5	NM_011771	22780	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.100000	0.616915	73(GTGCTTTAAAGC,-,0.00),75(GCTTTAAAGCGG,+,0.00)
mm_115695.1	chr13	14063173	14063373	-	1	NA	NA	NA	215	NM_001331119	14593	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	0.075000	0.592040	
mm_104862.1	chr11	99385993	99386193	-	1	NA	NA	NA	3271	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.160000	0.741294	
mm_52407.1	chr6	113388872	113389072	+	1	NA	NA	NA	-288	NM_001142732	101100	Mm.388573	NM_133923	ENSMUSG00000030276	Ttll3	4833441J24Rik|AI450050	tubulin tyrosine ligase-like family, member 3	protein-coding	0.015000	0.547264	
mm_158813.1	chrX	167307922	167308122	-	1	NA	NA	NA	22549	NM_001290757	170743	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	0.010000	0.432836	
mm_158306.1	chrX	122397244	122397444	-	1	NA	NA	NA	41	NM_138742	54561	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	0.060000	0.626866	
mm_38372.1	chr4	138456749	138456949	-	1	NA	NA	NA	1701	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.025000	0.472637	
mm_79033.1	chr9	46083785	46083985	+	1	NA	NA	NA	71065	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.010000	0.427861	-31(GCTTTTATAAGA,+,0.00),-31(GCTTTTATAAGA,-,0.00)
mm_87499.1	chr10	51533743	51533943	+	1	NA	NA	NA	42945	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.025000	0.417910	
mm_134499.1	chr16	18876446	18876646	-	1	NA	NA	NA	91	NM_010922	18100	Mm.20918	NM_010922	ENSMUSG00000022706	Mrpl40	Nlvcf	mitochondrial ribosomal protein L40	protein-coding	0.105000	0.696517	
mm_30582.1	chr4	5611751	5611951	+	1	NA	NA	NA	-20477	NR_038183	73872	Mm.427301	NR_038183	ENSMUSG00000086066	4930423M02Rik	-	RIKEN cDNA 4930423M02 gene	ncRNA	0.010000	0.427861	
mm_93926.1	chr10	127162835	127163035	-	1	NA	NA	NA	-2221	NR_045166	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.020000	0.517413	
mm_40091.1	chr5	34549448	34549648	+	1	NA	NA	NA	-28	NM_001145859	24055	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.045000	0.601990	
mm_131148.1	chr16	6563020	6563220	+	1	NA	NA	NA	-506715	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.000000	0.447761	
mm_104585.1	chr11	96977577	96977777	-	1	NA	NA	NA	11	NM_030220	78912	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.115000	0.691542	
mm_117370.1	chr13	71960277	71960477	-	1	NA	NA	NA	3346	NM_010573	16371	Mm.316056	NM_010573	ENSMUSG00000060969	Irx1	-	Iroquois related homeobox 1 (Drosophila)	protein-coding	0.035000	0.522388	
mm_69275.1	chr7	127946412	127946612	-	1	NA	NA	NA	213	NM_001319147	77613	Mm.334253	NM_001081374	ENSMUSG00000070371	Prss36	C330007D15Rik	protease, serine 36	protein-coding	0.005000	0.577114	
mm_135832.1	chr16	58523412	58523612	-	1	NA	NA	NA	-200	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.075000	0.676617	
mm_132668.1	chr16	42750664	42750864	+	1	NA	NA	NA	124823	NR_040521	75722	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	ENSMUSG00000075070|Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	0.005000	0.407960	
mm_53343.1	chr6	129275376	129275576	+	1	NA	NA	NA	-107	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.025000	0.482587	-84(GCCTTTATACTC,+,0.00)
mm_58753.1	chr7	13324494	13324694	+	1	NA	NA	NA	-1073	NM_001168504	232889	Mm.223639	NM_001004762	ENSMUSG00000033847	Pla2g4c	D7Ertd445e	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding	0.000000	0.497512	-33(TCCTTTAAATGC,-,0.00)
mm_99358.1	chr11	101610590	101610790	+	1	NA	NA	NA	-10	NM_001256318	666331	Mm.303457	NM_001256318		LOC666331	-	uncharacterized LOC666331	protein-coding	0.045000	0.582090	
mm_37432.1	chr4	122933880	122934080	-	1	NA	NA	NA	27208	NM_029662	76574	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.000000	0.437811	
mm_98793.1	chr11	96944160	96944360	+	1	NA	NA	NA	114	NR_003293	319371	Mm.436865	NR_003293	ENSMUSG00000078700	D030028A08Rik	-	RIKEN cDNA D030028A08 gene	ncRNA	0.065000	0.606965	
mm_67575.1	chr7	81992574	81992774	-	1	NA	NA	NA	-375	NM_007562	12173	Mm.243802	NM_007562	ENSMUSG00000025105	Bnc1	AI047752|AW546376|Bnc	basonuclin 1	protein-coding	0.080000	0.676617	
mm_20935.1	chr2	150858781	150858981	-	1	NA	NA	NA	45850	NM_024465	76192	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.025000	0.527363	
mm_11494.1	chr2	32493519	32493719	+	1	NA	NA	NA	-41740	NM_153560	98952	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.040000	0.572139	
mm_164490.1	chr16	86303005	86303205	+	1	NA	NA	NA	-401980	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0.000000	0.398010	
mm_45826.1	chr5	87694481	87694681	-	1	NA	NA	NA	4844	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.010000	0.497512	
mm_162474.1	chr1	133133451	133133651	-	1	NA	NA	NA	2385	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.000000	0.462687	
mm_118980.1	chr14	28284469	28284669	+	1	NA	NA	NA	-220904	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.005000	0.522388	
mm_46810.1	chr5	113078357	113078557	-	1	NA	NA	NA	3127	NM_001159650	12962	Mm.378899	NM_021352	ENSMUSG00000029352	Crybb3	AI852419	crystallin, beta B3	protein-coding	0.045000	0.611940	
mm_15060.1	chr2	152962398	152962598	+	1	NA	NA	NA	13	NM_001083618	74711	Mm.44746	NM_029064	ENSMUSG00000074673	Ttll9	1700016F23Rik|4930509O20Rik|AW046572	tubulin tyrosine ligase-like family, member 9	protein-coding	0.060000	0.522388	
mm_122315.1	chr14	36919335	36919535	-	1	NA	NA	NA	100	NM_001347503	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.020000	0.522388	
mm_57461.1	chr6	125187026	125187226	-	1	NA	NA	NA	-695	NR_028517	100217413		NR_028517		Scarna10	MBI-52	small Cajal body-specific RNA 10	ncRNA	0.020000	0.452736	
mm_101658.1	chr11	36677679	36677879	-	1	NA	NA	NA	266462	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.035000	0.487562	59(GGACTTAAAAGG,-,0.00)
mm_39480.1	chr5	20702072	20702272	+	1	NA	NA	NA	179952	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.060000	0.621891	
mm_62554.1	chr7	102442642	102442842	+	1	NA	NA	NA	1047	NM_009103	20133	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.010000	0.402985	
mm_168377.1	chr1	122086516	122086716	+	1	NA	NA	NA	-518636	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	0.050000	0.651741	
mm_41233.1	chr5	88757985	88758185	+	1	NA	NA	NA	-6928	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.010000	0.318408	
mm_121898.1	chr14	21848188	21848388	-	1	NA	NA	NA	622	NM_026965	69156	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0.020000	0.597015	
mm_84375.1	chr9	65021581	65021781	-	1	NA	NA	NA	36	NM_021345	57874	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	0.125000	0.726368	
mm_41735.1	chr5	102704066	102704266	+	1	NA	NA	NA	-64644	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.015000	0.472637	
mm_146115.1	chr18	74283015	74283215	+	1	NA	NA	NA	15	NM_028948	74453	Mm.182293	NM_028948	ENSMUSG00000035394	Cfap53	4933415I03Rik|Ccdc11	cilia and flagella associated protein 53	protein-coding	0.045000	0.577114	
mm_132727.1	chr16	43622889	43623089	+	1	NA	NA	NA	-17666	NR_030576	100124467		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.005000	0.472637	
mm_165128.1	chr2	7200869	7201069	-	1	NA	NA	NA	-119667	NM_001160292	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.000000	0.427861	
mm_78506.1	chr9	32752756	32752956	+	1	NA	NA	NA	56814	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.005000	0.482587	
mm_36285.1	chr4	63861186	63861386	-	1	NA	NA	NA	-2	NM_009403	21949	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.045000	0.532338	
mm_109880.1	chr12	4918140	4918340	-	1	NA	NA	NA	887	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.020000	0.497512	
mm_112292.1	chr12	114523851	114524051	-	1	NA	NA	NA	-10257	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.422886	
mm_660.1	chr1	40439546	40439746	+	1	NA	NA	NA	17	NM_010743	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.015000	0.388060	
mm_109350.1	chr12	109607700	109607900	+	1	NA	NA	NA	-3700	NR_029770	723846		NR_029770	ENSMUSG00000070101	Mir341	Mirn341|mmu-mir-341	microRNA 341	ncRNA	0.020000	0.497512	
mm_67261.1	chr7	75774045	75774245	-	1	NA	NA	NA	-74193	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.005000	0.393035	
mm_20621.1	chr2	131855735	131855935	-	1	NA	NA	NA	3912	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	0.015000	0.452736	
mm_142668.1	chr17	47728792	47728992	-	1	NA	NA	NA	2050	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.000000	0.507463	
mm_85820.1	chr9	110419859	110420059	-	1	NA	NA	NA	151	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.020000	0.527363	
mm_58411.1	chr7	3289124	3289324	+	1	NA	NA	NA	186	NM_001093764	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.065000	0.651741	
mm_132971.1	chr16	52031516	52031716	+	1	NA	NA	NA	67	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.110000	0.696517	
mm_127425.1	chr15	101267786	101267986	+	1	NA	NA	NA	1040	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.030000	0.552239	
mm_91656.1	chr10	42583555	42583755	-	1	NA	NA	NA	-67	NM_152229	21907	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	0.055000	0.621891	
mm_87282.1	chr10	42140845	42141045	+	1	NA	NA	NA	-122563	NM_001034858	213402	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.020000	0.502488	
mm_78932.1	chr9	45103749	45103949	+	1	NA	NA	NA	-14027	NM_001014761	72821	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	0.020000	0.477612	
mm_17750.1	chr2	32716585	32716785	-	1	NA	NA	NA	-3713	NR_039536	100628606		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0.025000	0.542289	
mm_120174.1	chr14	61129283	61129483	+	1	NA	NA	NA	-9074	NM_172809	50720	Mm.440703	NM_015788	ENSMUSG00000048279	Sacs	A230052M14|DNAJC29|E130115J16Rik|mKIAA0730	sacsin	protein-coding	0.020000	0.472637	
mm_151904.1	chr19	5799275	5799475	-	1	NA	NA	NA	3297	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.393035	-38(GTCTTTTAGAGG,-,0.00),-37(TCTTTTAGAGGG,+,0.00)
mm_161802.1	chr17	55945154	55945354	-	1	NA	NA	NA	5	NM_146249	240120	Mm.441018	NM_146249	ENSMUSG00000062101	Zfp119b	-	zinc finger protein 119b	protein-coding	0.075000	0.636816	
mm_169296.1	chr14	100314289	100314489	+	1	NA	NA	NA	-164593	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.015000	0.547264	
mm_10571.1	chr2	18064323	18064523	+	1	NA	NA	NA	-162	NM_001252560	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.145000	0.781095	
mm_61266.1	chr7	66109435	66109635	+	1	NA	NA	NA	20	NM_001081163	269941	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.165000	0.761194	
mm_16489.1	chr2	180974223	180974423	+	1	NA	NA	NA	7023	NM_001177706	228998	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	0.000000	0.338308	
mm_153918.1	chr19	47271946	47272146	-	1	NA	NA	NA	1543	NR_105961	102466782		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.020000	0.542289	61(CCTTTTCTGGGA,+,0.00)
mm_41419.1	chr5	90881905	90882105	+	1	NA	NA	NA	-9240	NM_008176	14825	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.015000	0.522388	
mm_127225.1	chr15	99397781	99397981	+	1	NA	NA	NA	4662	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.010000	0.383085	
mm_148325.1	chr18	84058004	84058204	-	1	NA	NA	NA	28458	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.010000	0.363184	
mm_83930.1	chr9	56635770	56635970	-	1	NA	NA	NA	-222	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.105000	0.731343	
mm_158570.1	chrX	150587951	150588151	-	1	NA	NA	NA	104	NM_029943	77622	Mm.440275	NM_029943	ENSMUSG00000025269	Apex2	C430040P13Rik|ape2	apurinic/apyrimidinic endonuclease 2	protein-coding	0.055000	0.567164	
mm_73138.1	chr8	94977203	94977403	+	1	NA	NA	NA	194	NM_001198894	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.020000	0.572139	
mm_131769.1	chr16	22894135	22894335	+	1	NA	NA	NA	151	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.025000	0.557214	
mm_85693.1	chr9	108079605	108079805	-	1	NA	NA	NA	-330	NM_032543	84585	Mm.379272	NM_032543	ENSMUSG00000041528	Rnf123	BC003945|Kpc1	ring finger protein 123	protein-coding	0.025000	0.572139	
mm_140040.1	chr17	74487134	74487334	+	1	NA	NA	NA	-2259	NM_026417	67864	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	0.025000	0.457711	
mm_167713.1	chr9	97015897	97016097	+	1	NA	NA	NA	2358	NM_145134	211949	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0.005000	0.517413	
mm_52080.1	chr6	97828206	97828406	+	1	NA	NA	NA	21248	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.447761	
mm_100558.1	chr11	120729498	120729698	+	1	NA	NA	NA	-2314	NM_001347608	67880	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	0.045000	0.557214	
mm_83672.1	chr9	49794359	49794559	-	1	NA	NA	NA	4610	NM_001081445	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding	0.010000	0.343284	59(CAGTATTAAAGC,-,0.00)
mm_89001.1	chr10	81620438	81620638	+	1	NA	NA	NA	6784	NM_001163430	50721	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0.005000	0.477612	
mm_88356.1	chr10	75935793	75935993	+	1	NA	NA	NA	320	NM_175329	103172	Mm.333849	NM_175329	ENSMUSG00000049422	Chchd10	1620401E04Rik|AI267078|Ndg2	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding	0.075000	0.646766	
mm_148617.1	chr19	5394535	5394735	+	1	NA	NA	NA	-5932	NM_016882	20227	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	0.010000	0.492537	
mm_24717.1	chr3	95231394	95231594	+	1	NA	NA	NA	2551	NM_001038708	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.005000	0.522388	
mm_152477.1	chr19	11017956	11018156	-	1	NA	NA	NA	-93	NM_001251849	76002	Mm.139320	NM_001251849	ENSMUSG00000094584	Ms4a18	5033428B15Rik	membrane-spanning 4-domains, subfamily A, member 18	protein-coding	0.015000	0.417910	
mm_4719.1	chr1	181061967	181062167	+	1	NA	NA	NA	10830	NM_001033819	619326	Mm.355174	NM_001033819	ENSMUSG00000038768	9130409I23Rik	-	RIKEN cDNA 9130409I23 gene	protein-coding	0.005000	0.512438	
mm_153022.1	chr19	31351365	31351565	-	1	NA	NA	NA	-135069	NR_002849	78103	Mm.445198	NR_002849		8430431K14Rik	-	RIKEN cDNA 8430431K14 gene	ncRNA	0.010000	0.303483	
mm_23189.1	chr3	40950709	40950909	+	1	NA	NA	NA	178	NM_001040399	214048	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0.075000	0.587065	
mm_130614.1	chr15	99966961	99967161	-	1	NA	NA	NA	-3004	NM_001080948	207214	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	0.005000	0.398010	
mm_108012.1	chr12	73586074	73586274	+	1	NA	NA	NA	1378	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.020000	0.527363	
mm_112620.1	chr13	15550820	15551020	+	1	NA	NA	NA	87197	NM_008130	14634	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0.020000	0.452736	
mm_118963.1	chr14	27438734	27438934	+	1	NA	NA	NA	9987	NM_001114879	218850	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0.000000	0.313433	
mm_21093.1	chr2	153224943	153225143	-	1	NA	NA	NA	398	NM_198617	241732	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.055000	0.626866	
mm_127431.1	chr15	101270035	101270235	+	1	NA	NA	NA	3289	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.035000	0.611940	
mm_97365.1	chr11	77513424	77513624	+	1	NA	NA	NA	-251	NM_001024920	216964	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	0.105000	0.696517	
mm_77607.1	chr8	123893168	123893368	-	1	NA	NA	NA	1507	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.035000	0.567164	
mm_16194.1	chr2	172979753	172979953	+	1	NA	NA	NA	11	NM_001305434	26972	Mm.23495	NM_012046	ENSMUSG00000005883	Spo11	AI449549|Spo11a|Spo11b	SPO11 meiotic protein covalently bound to DSB	protein-coding	0.120000	0.706468	
mm_172711.1	chr8	69575704	69575904	-	1	NA	NA	NA	49371	NM_001045553	234362	Mm.458487	NM_172754	ENSMUSG00000060427	Zfp868	AI449175|AW108241|C530032E20|mszf62	zinc finger protein 868	protein-coding	0.010000	0.492537	
mm_159065.1	chr2	22227419	22227619	+	1	NA	NA	NA	16	NM_148413	667663	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding	0.075000	0.711443	
mm_110168.1	chr12	27335480	27335680	-	1	NA	NA	NA	7138	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.020000	0.512438	-87(ACTTTTATAGAG,+,0.00)
mm_114294.1	chr13	58808175	58808375	+	1	NA	NA	NA	578	NM_001025074	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.035000	0.616915	
mm_162261.1	chrY	2663791	2663991	-	1	NA	NA	NA	-233	NM_011564	21674	Mm.377114	NM_011564	ENSMUSG00000069036	Sry	Tdf|Tdy	sex determining region of Chr Y	protein-coding	0.005000	0.373134	
mm_51493.1	chr6	83057183	83057383	+	1	NA	NA	NA	-561	NM_033606	93838	Mm.140332	NM_033606	ENSMUSG00000009145	Dqx1	2310066E11Rik	DEAQ RNA-dependent ATPase	protein-coding	0.035000	0.567164	
mm_55043.1	chr6	48988071	48988271	-	1	NA	NA	NA	1310	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.020000	0.577114	
mm_52052.1	chr6	97217884	97218084	+	1	NA	NA	NA	7192	NM_022992	65106	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	0.005000	0.343284	
mm_116396.1	chr13	41220113	41220313	-	1	NA	NA	NA	-51	NM_001311121	54326	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0.145000	0.766169	
mm_117982.1	chr13	100113917	100114117	-	1	NA	NA	NA	5998	NM_011353	20365	Mm.286177	NM_011353	ENSMUSG00000021643	Serf1	4F5|Msmac1|m4F5	small EDRK-rich factor 1	protein-coding	0.005000	0.373134	
mm_152015.1	chr19	5989254	5989454	-	1	NA	NA	NA	-3211	NM_198650	381203	Mm.329638	NM_198650	ENSMUSG00000037451	Slc22a20	Gm963|OAT1-L|mOAT6	solute carrier family 22 (organic anion transporter), member 20	protein-coding	0.035000	0.582090	
mm_157248.1	chrX	19146797	19146997	-	1	NA	NA	NA	74	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.005000	0.467662	
mm_50935.1	chr6	57702820	57703020	+	1	NA	NA	NA	465	NM_133737	71835	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.075000	0.661692	
mm_156027.1	chrX	107172196	107172396	+	1	NA	NA	NA	22681	NM_175442	213438	Mm.265244	NM_175442	ENSMUSG00000054293	A630033H20Rik	AI662791|P2ry10	RIKEN cDNA A630033H20 gene	protein-coding	0.005000	0.293532	70(ATCTTTAAAAGT,-,0.00),71(TCTTTAAAAGTA,+,0.00)
mm_88864.1	chr10	80939986	80940186	+	1	NA	NA	NA	9995	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.040000	0.472637	
mm_103070.1	chr11	69880760	69880960	-	1	NA	NA	NA	125	NM_153143	216858	Mm.239498	NM_153143	ENSMUSG00000046731	Kctd11	AF465352|Ren	potassium channel tetramerisation domain containing 11	protein-coding	0.045000	0.611940	
mm_19158.1	chr2	83353873	83354073	-	1	NA	NA	NA	-290605	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.025000	0.417910	
mm_143526.1	chr17	73899705	73899905	-	1	NA	NA	NA	50391	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.005000	0.373134	
mm_55870.1	chr6	83506720	83506920	-	1	NA	NA	NA	149	NM_013764	27369	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0.110000	0.666667	
mm_168221.1	chr10	78043429	78043629	-	1	NA	NA	NA	81	NM_001271552	11634	Mm.35300	NM_009646	ENSMUSG00000000731	Aire	-	autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	protein-coding	0.080000	0.656716	
mm_93206.1	chr10	94855465	94855665	-	1	NA	NA	NA	89013	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.000000	0.422886	
mm_73793.1	chr8	117256995	117257195	+	1	NA	NA	NA	76	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.155000	0.810945	
mm_71815.1	chr8	68884381	68884581	+	1	NA	NA	NA	3926	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.402985	
mm_93044.1	chr10	88471068	88471268	-	1	NA	NA	NA	11581	NM_011517	20962	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	0.005000	0.348259	56(GTTTTAATAGGA,+,0.00)
mm_25078.1	chr3	100008223	100008423	+	1	NA	NA	NA	122906	NM_028892	74362	Mm.55847	NM_028892	ENSMUSG00000027867	Spag17	4931427F14Rik|PF6|Spag17-ps	sperm associated antigen 17	protein-coding	0.010000	0.452736	
mm_27632.1	chr3	61363036	61363236	-	1	NA	NA	NA	-1371	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.040000	0.572139	
mm_136380.1	chr16	92825841	92826041	-	1	NA	NA	NA	133	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.025000	0.447761	
mm_46046.1	chr5	92050494	92050694	-	1	NA	NA	NA	-7552	NM_016912	53886	Mm.44963	NM_016912	ENSMUSG00000029403	Cdkl2	5330436L21Rik|AI505225|KKIAMRE|Kkm	cyclin-dependent kinase-like 2 (CDC2-related kinase)	protein-coding	0.015000	0.407960	-46(CACCATTAAAAG,-,0.00),-44(CCATTAAAAGGG,+,0.00)
mm_4251.1	chr1	171408069	171408269	+	1	NA	NA	NA	-3144	NM_001305678	22278	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	0.020000	0.477612	
mm_94449.1	chr11	6389027	6389227	+	1	NA	NA	NA	-5998	NM_001005867	52915	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.105000	0.766169	
mm_63136.1	chr7	123057037	123057237	+	1	NA	NA	NA	-66748	NM_144925	233833	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0.010000	0.333333	
mm_64184.1	chr7	141459553	141459753	+	1	NA	NA	NA	-1441	NM_001025103	213573	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.050000	0.641791	
mm_57527.1	chr6	126365845	126366045	-	1	NA	NA	NA	-37259	NR_045480	100038574	Mm.399353	NR_045480	ENSMUSG00000107623	Gm10415	ENSMUSG00000072759	predicted gene 10415	ncRNA	0.005000	0.517413	
mm_46598.1	chr5	107837401	107837601	-	1	NA	NA	NA	7339	NM_001276397	73318	Mm.441500	NM_028502	ENSMUSG00000063447	Ube2d2b	1700013N18Rik	ubiquitin-conjugating enzyme E2D 2B	protein-coding	0.005000	0.323383	
mm_39783.1	chr5	30159830	30160030	+	1	NA	NA	NA	4677	NM_001289798	231086	Mm.291463	NM_145558	ENSMUSG00000059447	Hadhb	4930479F15Rik|Mtpb|TP-beta	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit	protein-coding	0.015000	0.472637	
mm_22552.1	chr3	9608714	9608914	+	1	NA	NA	NA	1271	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.030000	0.547264	
mm_152626.1	chr19	12473329	12473529	-	1	NA	NA	NA	12650	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.000000	0.393035	
mm_129478.1	chr15	78718762	78718962	-	1	NA	NA	NA	-749	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0.115000	0.756219	
mm_132746.1	chr16	44146220	44146420	+	1	NA	NA	NA	6511	NM_028108	72117	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	0.000000	0.333333	
mm_14584.1	chr2	135764866	135765066	+	1	NA	NA	NA	23136	NM_013829	18798	Mm.38009	NM_013829	ENSMUSG00000039943	Plcb4	A930039J07Rik|AI854601|C230058B11Rik	phospholipase C, beta 4	protein-coding	0.020000	0.527363	
mm_42126.1	chr5	110906384	110906584	+	1	NA	NA	NA	26681	NM_001267622	209683	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	0.005000	0.293532	21(AACTATAAAAGA,-,0.00)
mm_108496.1	chr12	83688160	83688360	+	1	NA	NA	NA	-303	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.115000	0.696517	
mm_136173.1	chr16	88671624	88671824	-	1	NA	NA	NA	-70	NM_001163105	239933	Mm.478807	NM_001163105	ENSMUSG00000090515	Krtap27-1	EG239933	keratin associated protein 27-1	protein-coding	0.000000	0.363184	
mm_37266.1	chr4	118489710	118489910	-	1	NA	NA	NA	39	NM_011587	21846	Mm.4345	NM_011587	ENSMUSG00000033191	Tie1	D430008P04Rik|TIE|tie-1	tyrosine kinase with immunoglobulin-like and EGF-like domains 1	protein-coding	0.025000	0.641791	
mm_70864.1	chr8	24595680	24595880	+	1	NA	NA	NA	-114	NM_001293690	15930	Mm.392	NM_008324	ENSMUSG00000031551	Ido1	Ido|Indo	indoleamine 2,3-dioxygenase 1	protein-coding	0.055000	0.601990	
mm_1648.1	chr1	74661459	74661659	+	1	NA	NA	NA	-195	NM_001014974	67534	Mm.260714	NM_001014974	ENSMUSG00000033257	Ttll4	4632407P03Rik|AI451681|mKIAA0173	tubulin tyrosine ligase-like family, member 4	protein-coding	0.045000	0.562189	
mm_166605.1	chr6	67875885	67876085	+	1	NA	NA	NA	-310286	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.000000	0.442786	
mm_147981.1	chr18	67549157	67549357	-	1	NA	NA	NA	-84	NM_176832	68166	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire homolog 1 (Drosophila)	protein-coding	0.025000	0.467662	
mm_128066.1	chr15	26895449	26895649	-	1	NA	NA	NA	15	NM_176959	448987	Mm.253378	NM_176959	ENSMUSG00000043556	Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding	0.130000	0.751244	
mm_88546.1	chr10	78576965	78577165	+	1	NA	NA	NA	2565	NM_173751	216136	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0.015000	0.562189	
mm_78903.1	chr9	44772829	44773029	+	1	NA	NA	NA	-80	NM_023831	76568	Mm.278597	NM_023831	ENSMUSG00000002031	Ift46	1500035H01Rik|AA408110|AI663846|R75047|c11orf2	intraflagellar transport 46	protein-coding	0.105000	0.641791	
mm_93613.1	chr10	117238551	117238751	-	1	NA	NA	NA	30	NM_029906	77397	Mm.118350	NM_029906	ENSMUSG00000020177	9530003J23Rik	Lyzf1	RIKEN cDNA 9530003J23 gene	protein-coding	0.025000	0.482587	14(GCTTAAATACTG,+,0.00)
mm_147715.1	chr18	60812449	60812649	-	1	NA	NA	NA	473	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.000000	0.542289	
mm_158977.1	chr1	119995171	119995371	-	1	NA	NA	NA	-61	NM_001115074	226356	Mm.297290	NM_001115074	ENSMUSG00000036962	Cfap221	Gm101|Pcdp1	cilia and flagella associated protein 221	protein-coding	0.015000	0.457711	
mm_140504.1	chr17	5217194	5217394	-	1	NA	NA	NA	201473	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.020000	0.537313	
mm_117883.1	chr13	99344579	99344779	-	1	NA	NA	NA	-1	NM_026873	68927	Mm.276502	NM_026873	ENSMUSG00000021650	Ptcd2	1190005P08Rik	pentatricopeptide repeat domain 2	protein-coding	0.090000	0.721393	
mm_160853.1	chr11	55607790	55607990	-	1	NA	NA	NA	308	NM_001290821	14654	Mm.89320	NM_020492	ENSMUSG00000000263	Glra1	nmf11|oscillator|ot|spasmodic|spd	glycine receptor, alpha 1 subunit	protein-coding	0.075000	0.631841	
mm_97248.1	chr11	75751877	75752077	+	1	NA	NA	NA	19090	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.020000	0.417910	
mm_110057.1	chr12	20921164	20921364	-	1	NA	NA	NA	-105485	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.115000	0.741294	
mm_735.1	chr1	43445683	43445883	+	1	NA	NA	NA	32	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.185000	0.855721	
mm_117737.1	chr13	95671337	95671537	-	1	NA	NA	NA	-25483	NM_010170	14064	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	0.020000	0.457711	
mm_156603.1	chrX	153139876	153140076	+	1	NA	NA	NA	18	NM_001004154	245670	Mm.190922	NM_001004154	ENSMUSG00000041658	Rragb	-	Ras-related GTP binding B	protein-coding	0.070000	0.641791	
mm_143445.1	chr17	70873330	70873530	-	1	NA	NA	NA	-19898	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.045000	0.522388	
mm_56832.1	chr6	117174559	117174759	-	1	NA	NA	NA	6124	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.010000	0.333333	
mm_53901.1	chr6	3494435	3494635	-	1	NA	NA	NA	-37	NM_178899	101202	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0.010000	0.482587	69(GCTTTTATGGAG,+,0.00)
mm_27999.1	chr3	82903823	82904023	-	1	NA	NA	NA	51	NM_023624	79235	Mm.33921	NM_023624	ENSMUSG00000028003	Lrat	1300010A18Rik|AI449251	lecithin-retinol acyltransferase (phosphatidylcholine-retinol-O-acyltransferase)	protein-coding	0.045000	0.611940	-85(ACCTCTATAAGA,-,0.00),-83(CTCTATAAGAGC,-,0.00)
mm_107538.1	chr12	40572708	40572908	+	1	NA	NA	NA	126755	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.005000	0.447761	
mm_140350.1	chr17	86831159	86831359	+	1	NA	NA	NA	77395	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.010000	0.388060	
mm_73224.1	chr8	101590908	101591108	+	1	NA	NA	NA	1194103	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.005000	0.363184	
mm_124042.1	chr14	77036768	77036968	-	1	NA	NA	NA	96	NM_001310649	108811	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	0.115000	0.731343	
mm_37409.1	chr4	122859074	122859274	-	1	NA	NA	NA	22947	NM_008917	19063	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.000000	0.353234	
mm_95713.1	chr11	54516209	54516409	+	1	NA	NA	NA	-6536	NM_001252494	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.005000	0.248756	
mm_104956.1	chr11	100141537	100141737	-	1	NA	NA	NA	2062	NM_001313963	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.020000	0.537313	
mm_107712.1	chr12	55836247	55836447	+	1	NA	NA	NA	-19	NM_001037756	52592	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0.100000	0.656716	
mm_146895.1	chr18	29496450	29496650	-	1	NA	NA	NA	-134	NR_045391	78058	Mm.416952	NR_045391		4930578E11Rik	-	RIKEN cDNA 4930578E11 gene	ncRNA	0.015000	0.517413	
mm_93820.1	chr10	121475713	121475913	-	1	NA	NA	NA	437	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.080000	0.716418	
mm_103941.1	chr11	83849571	83849771	-	1	NA	NA	NA	-1198	NM_001291268	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.025000	0.592040	
mm_112301.1	chr12	114736631	114736831	-	1	NA	NA	NA	-223037	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.005000	0.442786	
mm_144615.1	chr18	32837135	32837335	+	1	NA	NA	NA	10	NM_001110016	225348	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	0.085000	0.616915	
mm_130693.1	chr15	100682832	100683032	-	1	NA	NA	NA	4988	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.015000	0.597015	
mm_90168.1	chr10	119468624	119468824	+	1	NA	NA	NA	14690	NM_001277293	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding	0.020000	0.358209	74(GCCTTTTAAAAA,-,0.00),75(CCTTTTAAAAAA,+,0.00)
mm_42797.1	chr5	121711722	121711922	+	1	NA	NA	NA	213	NM_009125	20239	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.185000	0.835821	
mm_87389.1	chr10	45107418	45107618	+	1	NA	NA	NA	40304	NM_011156	19072	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.000000	0.537313	
mm_100006.1	chr11	114851835	114852035	+	1	NA	NA	NA	-95	NM_147217	70355	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.095000	0.671642	
mm_86179.1	chr9	119190270	119190470	-	1	NA	NA	NA	23	NM_001037749	382113	Mm.335525	NM_001037749	ENSMUSG00000070280	Slc22a14	Gm1128	solute carrier family 22 (organic cation transporter), member 14	protein-coding	0.010000	0.532338	
mm_43539.1	chr5	137350101	137350301	+	1	NA	NA	NA	92	NM_010144	13846	Mm.34533	NM_010144	ENSMUSG00000029710	Ephb4	AI042935|Htk|MDK2|Myk1|Tyro11	Eph receptor B4	protein-coding	0.090000	0.686567	
mm_87091.1	chr10	32889715	32889915	+	1	NA	NA	NA	100	NM_001013411	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding	0.070000	0.646766	
mm_111415.1	chr12	91556917	91557117	-	1	NA	NA	NA	32632	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.035000	0.407960	66(CAGTTTTAAAAG,-,0.00),68(GTTTTAAAAGTC,+,0.00)
mm_128981.1	chr15	74833578	74833778	-	1	NA	NA	NA	7965	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.005000	0.422886	
mm_31490.1	chr4	52989190	52989390	+	1	NA	NA	NA	6	NM_028529	73398	Mm.252738	NM_028529	ENSMUSG00000015242	Nipsnap3a	1700054F22Rik|AI429120	nipsnap homolog 3A (C. elegans)	protein-coding	0.030000	0.532338	-31(CCTTATAGAACA,+,0.00)
mm_116798.1	chr13	53639110	53639310	-	1	NA	NA	NA	-9	NR_131079	77398	Mm.174307	NR_131079		9530014B07Rik	-	RIKEN cDNA 9530014B07 gene	ncRNA	0.015000	0.497512	
mm_9410.1	chr1	172278823	172279023	-	1	NA	NA	NA	19141	NM_178405	98660	Mm.207432	NM_178405	ENSMUSG00000007097	Atp1a2	AW060654|Atpa-3|mKIAA0778	ATPase, Na+/K+ transporting, alpha 2 polypeptide	protein-coding	0.025000	0.527363	
mm_80775.1	chr9	95563656	95563856	+	1	NA	NA	NA	3939	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.015000	0.378109	
mm_153577.1	chr19	43388199	43388399	-	1	NA	NA	NA	56	NM_001081257	545291	Mm.442200	NM_001081257	ENSMUSG00000074852	Hpse2	Gm968|Hpa2	heparanase 2	protein-coding	0.015000	0.547264	
mm_41393.1	chr5	90771528	90771728	+	1	NA	NA	NA	-807	NM_019932	56744	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	0.005000	0.402985	
mm_62032.1	chr7	91754515	91754715	+	1	NA	NA	NA	-307779	NM_001243046	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.005000	0.378109	11(CCCTTAATATCC,+,0.00)
mm_97326.1	chr11	76945712	76945912	+	1	NA	NA	NA	156	NM_178645	104184	Mm.399785	NM_178645	ENSMUSG00000020840	Blmh	AI035728|Bh|Bmh	bleomycin hydrolase	protein-coding	0.075000	0.597015	
mm_57312.1	chr6	124724497	124724697	-	1	NA	NA	NA	-6207	NR_029792	723944		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0.040000	0.606965	
mm_136730.1	chr17	8283329	8283529	+	1	NA	NA	NA	-384	NM_018819	55951	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	0.065000	0.611940	
mm_152341.1	chr19	9982457	9982657	-	1	NA	NA	NA	-89	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.105000	0.701493	
mm_113439.1	chr13	34888058	34888258	+	1	NA	NA	NA	12664	NM_013830	19134	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	0.020000	0.402985	
mm_79136.1	chr9	47623190	47623390	+	1	NA	NA	NA	92938	NM_018770	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.000000	0.368159	
mm_139699.1	chr17	57449786	57449986	+	1	NA	NA	NA	91200	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.015000	0.487562	
mm_101668.1	chr11	37059186	37059386	-	1	NA	NA	NA	-115045	NM_011856	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.005000	0.288557	
mm_53100.1	chr6	125049879	125050079	+	1	NA	NA	NA	52	NM_016845	54137	Mm.347910	NM_016845	ENSMUSG00000072770	Acrbp	OY-TES-1|sp32	proacrosin binding protein	protein-coding	0.070000	0.611940	
mm_25711.1	chr3	122512088	122512288	+	1	NA	NA	NA	29493	NR_106117	102465764		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.015000	0.522388	
mm_70789.1	chr8	22506429	22506629	+	1	NA	NA	NA	-29650	NM_001146117	102032	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	0.035000	0.477612	
mm_48940.1	chr6	4539385	4539585	+	1	NA	NA	NA	33867	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.030000	0.457711	-56(GTCTATTTAAGA,-,0.00)
mm_7186.1	chr1	92837792	92837992	-	1	NA	NA	NA	6206	NM_016696	14733	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.015000	0.552239	
mm_1652.1	chr1	74661713	74661913	+	1	NA	NA	NA	59	NM_001014974	67534	Mm.260714	NM_001014974	ENSMUSG00000033257	Ttll4	4632407P03Rik|AI451681|mKIAA0173	tubulin tyrosine ligase-like family, member 4	protein-coding	0.115000	0.681592	
mm_129134.1	chr15	76198076	76198276	-	1	NA	NA	NA	33	NM_201393	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.080000	0.671642	
mm_123230.1	chr14	60086761	60086961	-	1	NA	NA	NA	-27	NM_015803	50769	Mm.319599	NM_015803	ENSMUSG00000021983	Atp8a2	AI415030|Atpc1b|agil|wl	ATPase, aminophospholipid transporter-like, class I, type 8A, member 2	protein-coding	0.065000	0.696517	
mm_159766.1	chr5	96811025	96811225	+	1	NA	NA	NA	17740	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.035000	0.502488	-61(AACCATAAAAGA,-,0.00),70(CTGTCTAAAAAG,-,0.00)
mm_1661.1	chr1	74713460	74713660	+	1	NA	NA	NA	25	NM_024264	104086	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0.050000	0.577114	-34(GCCTTTAAAGTC,+,0.00),-33(CCTTTAAAGTCG,+,0.00)
mm_111097.1	chr12	80643764	80643964	-	1	NA	NA	NA	247	NM_007951	13877	Mm.246551	NM_007951	ENSMUSG00000021131	Erh	Mer|Prei1	enhancer of rudimentary homolog (Drosophila)	protein-coding	0.110000	0.592040	
mm_147796.1	chr18	61657804	61658004	-	1	NA	NA	NA	7634	NR_045402	328968	Mm.392305	NR_045402		Carmn	Carmen|E330013P06|Gm16908|Mir143hg	cardiac mesoderm enhancer-associated non-coding RNA	ncRNA	0.005000	0.432836	
mm_52208.1	chr6	100839055	100839255	+	1	NA	NA	NA	5517	NM_182939	232314	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	0.010000	0.497512	
mm_41772.1	chr5	103516032	103516232	+	1	NA	NA	NA	90940	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.015000	0.417910	
mm_51010.1	chr6	65002326	65002526	+	1	NA	NA	NA	-40241	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.005000	0.492537	
mm_102299.1	chr11	55461085	55461285	-	1	NA	NA	NA	-47	NM_009720	11927	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.090000	0.676617	
mm_60084.1	chr7	34312922	34313122	+	1	NA	NA	NA	-27413	NM_172741	233103	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	0.095000	0.721393	
mm_75695.1	chr8	68211980	68212180	-	1	NA	NA	NA	-64448	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.005000	0.412935	-87(TGCTTTTTAAAG,-,0.00),-85(CTTTTTAAAGAA,+,0.00)
mm_48117.1	chr5	137138214	137138414	-	1	NA	NA	NA	-22107	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.045000	0.577114	
mm_41305.1	chr5	90467709	90467909	+	1	NA	NA	NA	6939	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.432836	25(GGCTTTTAAAAA,-,0.00)
mm_97767.1	chr11	82036389	82036589	+	1	NA	NA	NA	912	NM_011333	20296	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.010000	0.502488	
mm_163348.1	chr12	17416261	17416461	+	1	NA	NA	NA	60969	NR_037226	100526470		NR_037226	ENSMUSG00000093037	Mir3066	mir-3066|mmu-mir-3066	microRNA 3066	ncRNA	0.030000	0.462687	
mm_51268.1	chr6	72099834	72100034	+	1	NA	NA	NA	2326	NM_011375	20454	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.005000	0.447761	
mm_163124.1	chr11	77078418	77078618	+	1	NA	NA	NA	-81	NM_001012309	237859	Mm.156195	NM_001012309	ENSMUSG00000037958	Nsrp1	8030451K07|AI851076|AL022898|Ccdc55|NSpr70|NSrp70	nuclear speckle regulatory protein 1	protein-coding	0.125000	0.631841	
mm_72861.1	chr8	88521260	88521460	+	1	NA	NA	NA	16	NM_027280	93960	Mm.30219	NM_027280	ENSMUSG00000031661	Nkd1	2810434J10Rik|9030215G15Rik|Nkd	naked cuticle 1 homolog (Drosophila)	protein-coding	0.180000	0.810945	
mm_147601.1	chr18	56791394	56791594	-	1	NA	NA	NA	83681	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.005000	0.407960	
mm_80573.1	chr9	84002901	84003101	+	1	NA	NA	NA	54220	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.000000	0.243781	
mm_70486.1	chr8	12396173	12396373	+	1	NA	NA	NA	754	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.040000	0.621891	
mm_150085.1	chr19	29387740	29387940	+	1	NA	NA	NA	20402	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.025000	0.447761	
mm_113182.1	chr13	24905525	24905725	+	1	NA	NA	NA	25	NR_045182	73326	Mm.458692	NR_045182		4932702P03Rik	1700047I16Rik	RIKEN cDNA 4932702P03 gene	ncRNA	0.045000	0.577114	
mm_165605.1	chr3	50443426	50443626	+	1	NA	NA	NA	87	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.040000	0.557214	80(CCGTATTTAAGC,-,0.00)
mm_83845.1	chr9	54474319	54474519	-	1	NA	NA	NA	27207	NM_172771	235380	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.000000	0.422886	76(TTCCCTTAAAGG,-,0.00),77(TCCCTTAAAGGG,-,0.00),78(CCCTTAAAGGGC,+,0.00),79(CCTTAAAGGGCT,+,0.00)
mm_53274.1	chr6	128523882	128524082	+	1	NA	NA	NA	2738	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.015000	0.427861	
mm_19555.1	chr2	98666690	98666890	-	1	NA	NA	NA	1199133	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.030000	0.363184	
mm_125749.1	chr15	73742758	73742958	+	1	NA	NA	NA	-5168	NM_008975	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.025000	0.557214	
mm_41665.1	chr5	99336649	99336849	+	1	NA	NA	NA	-83822	NM_145839	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.030000	0.462687	
mm_147858.1	chr18	63708463	63708663	-	1	NA	NA	NA	-132	NM_001014981	104082	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0.065000	0.542289	
mm_94404.1	chr11	5788420	5788620	+	1	NA	NA	NA	37	NM_013810	13169	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0.120000	0.711443	
mm_18573.1	chr2	65567223	65567423	-	1	NA	NA	NA	169	NM_018732	20269	Mm.330256	NM_018732	ENSMUSG00000057182	Scn3a	Gm1000|Nav1.3	sodium channel, voltage-gated, type III, alpha	protein-coding	0.010000	0.402985	
mm_150244.1	chr19	34085382	34085582	+	1	NA	NA	NA	-15461	NM_023903	78753	Mm.195937	NM_023903	ENSMUSG00000056078	Lipm	4632427C23Rik|AW227514|Lipl3	lipase, family member M	protein-coding	0.000000	0.288557	
mm_5985.1	chr1	58423918	58424118	-	1	NA	NA	NA	70	NR_027853	12747	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	0.090000	0.567164	
mm_20083.1	chr2	120692802	120693002	-	1	NA	NA	NA	38615	NM_026891	68968	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	0.005000	0.467662	
mm_107729.1	chr12	57475344	57475544	+	1	NA	NA	NA	70677	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.010000	0.283582	
mm_9259.1	chr1	171607242	171607442	-	1	NA	NA	NA	-8	NR_102726	17085	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	0.030000	0.467662	
mm_127857.1	chr15	8350331	8350531	-	1	NA	NA	NA	94032	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.015000	0.383085	
mm_85387.1	chr9	103228329	103228529	-	1	NA	NA	NA	1857	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.010000	0.487562	
mm_61807.1	chr7	87246590	87246790	+	1	NA	NA	NA	41	NM_001285833	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	0.090000	0.736318	
mm_137664.1	chr17	28692504	28692704	+	1	NA	NA	NA	36	NM_001168513	26416	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.055000	0.527363	
mm_14625.1	chr2	136777236	136777436	+	1	NA	NA	NA	63886	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.020000	0.482587	
mm_147045.1	chr18	34924810	34925010	-	1	NA	NA	NA	7093	NM_144866	225363	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.010000	0.432836	
mm_115788.1	chr13	19337085	19337285	-	1	NA	NA	NA	58628	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.487562	
mm_28920.1	chr3	98857912	98858112	-	1	NA	NA	NA	1782	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.000000	0.477612	
mm_143980.1	chr17	87459368	87459568	-	1	NA	NA	NA	-12533	NM_007589	12314	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017	calmodulin 2	protein-coding	0.040000	0.592040	
mm_55508.1	chr6	69900909	69901109	-	1	NA	NA	NA	-573835	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.398010	64(GCTTTTCTGGAC,+,0.00)
mm_139775.1	chr17	64895714	64895914	+	1	NA	NA	NA	-59743	NM_030031	78057	Mm.109380	NM_030031	ENSMUSG00000024088	4930583I09Rik	-	RIKEN cDNA 4930583I09 gene	protein-coding	0.030000	0.422886	
mm_169052.1	chr13	20748472	20748672	+	1	NA	NA	NA	-45541	NM_001281854	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.030000	0.537313	
mm_141626.1	chr17	32916937	32917137	-	1	NA	NA	NA	50	NM_022434	64385	Mm.486449	NM_022434	ENSMUSG00000024292	Cyp4f14	1300014O15Rik|cyp4f-14	cytochrome P450, family 4, subfamily f, polypeptide 14	protein-coding	0.000000	0.452736	
mm_61449.1	chr7	75586112	75586312	+	1	NA	NA	NA	130678	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.040000	0.572139	
mm_38975.1	chr4	150909344	150909544	-	1	NA	NA	NA	477	NM_020569	57320	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.010000	0.398010	
mm_142868.1	chr17	51815222	51815422	-	1	NA	NA	NA	-3268	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.010000	0.363184	
mm_124145.1	chr14	88123730	88123930	-	1	NA	NA	NA	347566	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding	0.035000	0.402985	
mm_15705.1	chr2	163995177	163995377	+	1	NA	NA	NA	80	NM_018753	54401	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	0.145000	0.761194	
mm_75143.1	chr8	35480462	35480662	-	1	NA	NA	NA	14971	NM_026067	67276	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	0.025000	0.402985	
mm_81038.1	chr9	105053154	105053354	+	1	NA	NA	NA	-14	NM_053159	94062	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	0.060000	0.552239	
mm_110973.1	chr12	76962008	76962208	-	1	NA	NA	NA	140	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.075000	0.636816	
mm_166322.1	chr5	111509291	111509491	+	1	NA	NA	NA	-72170	NR_015546	330164	Mm.193276	NM_177875	ENSMUSG00000052848	C130026L21Rik	-	RIKEN cDNA C130026L21 gene	ncRNA	0.040000	0.616915	
mm_7255.1	chr1	93754688	93754888	-	1	NA	NA	NA	50	NM_025920	67026	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	0.185000	0.776119	
mm_144478.1	chr18	23944838	23945038	+	1	NA	NA	NA	-9750	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.030000	0.442786	
mm_100957.1	chr11	6635439	6635639	-	1	NA	NA	NA	3110	NM_011709	22373	Mm.268094	NM_011709	ENSMUSG00000000381	Wap	-	whey acidic protein	protein-coding	0.010000	0.502488	
mm_26405.1	chr3	142606690	142606890	+	1	NA	NA	NA	11943	NM_010259	14468	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.010000	0.452736	-74(CTTTATATAGGT,+,0.00),-66(AGGTCTAAAAAG,-,0.00)
mm_35419.1	chr4	35125242	35125442	-	1	NA	NA	NA	-26713	NM_199157	387510	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.010000	0.532338	
mm_108564.1	chr12	84762702	84762902	+	1	NA	NA	NA	10310	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.005000	0.537313	
mm_135418.1	chr16	45158535	45158735	-	1	NA	NA	NA	38	NM_028756	74102	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	0.080000	0.611940	
mm_119013.1	chr14	29978296	29978496	+	1	NA	NA	NA	59	NM_027493	56249	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	0.080000	0.666667	
mm_172221.1	chr6	65318266	65318466	+	1	NA	NA	NA	-62928	NM_175524	243407	Mm.389758	NM_175524	ENSMUSG00000029917	C130060K24Rik	-	RIKEN cDNA C130060K24 gene	protein-coding	0.035000	0.537313	
mm_110611.1	chr12	56537442	56537642	-	1	NA	NA	NA	-634	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.050000	0.587065	
mm_84449.1	chr9	66514413	66514613	-	1	NA	NA	NA	80	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.025000	0.606965	-76(CCCTTTCTGGGC,+,0.00)
mm_41809.1	chr5	103754696	103754896	+	1	NA	NA	NA	223	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.035000	0.432836	
mm_9731.1	chr1	180228927	180229127	-	1	NA	NA	NA	16923	NM_011183	19165	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.025000	0.472637	
mm_68863.1	chr7	126414752	126414952	-	1	NA	NA	NA	18	NM_009844	12478	Mm.4360	NM_009844	ENSMUSG00000030724	Cd19	AW495831	CD19 antigen	protein-coding	0.020000	0.616915	
mm_52223.1	chr6	103510986	103511186	+	1	NA	NA	NA	210	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.045000	0.547264	
mm_91291.1	chr10	24915393	24915593	-	1	NA	NA	NA	4829	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.005000	0.378109	
mm_130917.1	chr15	102670866	102671066	-	1	NA	NA	NA	81	NM_026468	67942	Mm.10314	NM_026468	ENSMUSG00000062683	Atp5g2	1810041M08Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	protein-coding	0.115000	0.731343	
mm_135892.1	chr16	64919011	64919211	-	1	NA	NA	NA	67026	NM_178647	106143	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.045000	0.462687	
mm_51159.1	chr6	70723443	70723643	+	1	NA	NA	NA	68632	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.030000	0.427861	
mm_5819.1	chr1	52727044	52727244	-	1	NA	NA	NA	174	NM_178081	98682	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	0.150000	0.805970	
mm_49542.1	chr6	30352927	30353127	+	1	NA	NA	NA	37983	NM_172735	232679	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	0.035000	0.552239	
mm_107586.1	chr12	45093910	45094110	+	1	NA	NA	NA	-19527	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.005000	0.462687	
mm_121235.1	chr14	103055996	103056196	+	1	NA	NA	NA	9084	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.015000	0.378109	
mm_91757.1	chr10	50894405	50894605	-	1	NA	NA	NA	-1146	NM_011376	20464	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded homolog 1 (Drosophila)	protein-coding	0.110000	0.726368	
mm_33.1	chr1	6249220	6249420	+	1	NA	NA	NA	34658	NM_009826	12421	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	0.005000	0.373134	
mm_51529.1	chr6	83186239	83186439	+	1	NA	NA	NA	393	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.030000	0.552239	
mm_46888.1	chr5	113974673	113974873	-	1	NA	NA	NA	18984	NM_198109	231637	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot homolog 1 (Drosophila)	protein-coding	0.035000	0.606965	
mm_128221.1	chr15	36367018	36367218	-	1	NA	NA	NA	-83971	NM_013923	30945	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0.000000	0.477612	
mm_117340.1	chr13	69534497	69534697	-	1	NA	NA	NA	-733	NM_001169131	210106	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.180000	0.791045	
mm_149040.1	chr19	8820034	8820234	+	1	NA	NA	NA	733	NM_001081196	68693	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0.140000	0.701493	
mm_43015.1	chr5	123907166	123907366	+	1	NA	NA	NA	-9	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.135000	0.711443	
mm_13207.1	chr2	93642187	93642387	+	1	NA	NA	NA	-147	NM_007442	11695	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.025000	0.527363	
mm_112528.1	chr13	9278076	9278276	+	1	NA	NA	NA	1651	NM_001081426	208440	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.030000	0.417910	
mm_74955.1	chr8	26015502	26015702	-	1	NA	NA	NA	-1	NM_008033	14272	Mm.3496	NM_008033	ENSMUSG00000015994	Fnta	FTA	farnesyltransferase, CAAX box, alpha	protein-coding	0.120000	0.776119	
mm_130283.1	chr15	96953443	96953643	-	1	NA	NA	NA	102413	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.045000	0.582090	
mm_137589.1	chr17	28040696	28040896	+	1	NA	NA	NA	39788	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.040000	0.626866	
mm_165696.1	chr3	93445159	93445359	+	1	NA	NA	NA	2929	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.060000	0.562189	
mm_120511.1	chr14	66344275	66344475	+	1	NA	NA	NA	79	NM_019675	56471	Mm.35474	NM_019675	ENSMUSG00000022044	Stmn4	Lagl|R75359|RB3	stathmin-like 4	protein-coding	0.030000	0.512438	
mm_161372.1	chr14	66868697	66868897	+	1	NA	NA	NA	-53	NM_001034881	432870	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	0.125000	0.696517	
mm_79586.1	chr9	58253226	58253426	+	1	NA	NA	NA	162	NM_026942	69106	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.070000	0.641791	
mm_118361.1	chr13	115101666	115101866	-	1	NA	NA	NA	198	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.055000	0.572139	
mm_65007.1	chr7	17056751	17056951	-	1	NA	NA	NA	-172	NM_016868	53417	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0.010000	0.577114	-47(CCTCTTAGGCCC,+,0.00)
mm_138623.1	chr17	35841398	35841598	+	1	NA	NA	NA	0	NM_001010833	240087	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	0.060000	0.587065	
mm_94878.1	chr11	24158206	24158406	+	1	NA	NA	NA	77611	NM_001159290	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.030000	0.502488	
mm_159544.1	chr4	88841695	88841895	+	1	NA	NA	NA	-21	NM_010504	15967	Mm.377088	NM_010504	ENSMUSG00000070904	Ifna4	Ifa4	interferon alpha 4	protein-coding	0.005000	0.462687	-34(CCCTATTTAAGA,-,0.00)
mm_38160.1	chr4	135214437	135214637	-	1	NA	NA	NA	58223	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.015000	0.393035	
mm_138426.1	chr17	35076794	35076994	+	1	NA	NA	NA	-48	NM_027366	70274	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	0.020000	0.512438	
mm_69046.1	chr7	126831374	126831574	-	1	NA	NA	NA	22	NM_183131	78118	Mm.107753	NM_183131	ENSMUSG00000045989	4930451I11Rik	-	RIKEN cDNA 4930451I11 gene	protein-coding	0.020000	0.522388	
mm_67788.1	chr7	97579365	97579565	-	1	NA	NA	NA	32	NM_001177945	66273	Mm.41583	NM_183251	ENSMUSG00000035642	Aamdc	1810020D17Rik|1810037D19Rik|LI2	adipogenesis associated Mth938 domain containing	protein-coding	0.080000	0.646766	
mm_14003.1	chr2	122014707	122014907	+	1	NA	NA	NA	-13773	NM_144545	78655	Mm.458184	NM_144545	ENSMUSG00000027236	Eif3j1	1810016I04Rik|2700079K05Rik|AA409117|AA409446|C78575|Eif3j|Eif3j-1|Eif3j-2|Eif3j2|Eif3s1|eIF-3-alpha-A|eIF-3-alpha-B|eIF3-alpha|eIF3-p35|eIF3j-A|eIF3j-B	eukaryotic translation initiation factor 3, subunit J1	protein-coding	0.010000	0.353234	
mm_126650.1	chr15	84127262	84127462	+	1	NA	NA	NA	-4187	NM_029427	75772	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0.015000	0.512438	
mm_70656.1	chr8	14534369	14534569	+	1	NA	NA	NA	-354067	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.000000	0.358209	
mm_43286.1	chr5	134099632	134099832	+	1	NA	NA	NA	-16	NM_030719	80909	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding	0.115000	0.671642	
mm_116255.1	chr13	34050469	34050669	-	1	NA	NA	NA	12928	NM_026512	68021	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0.025000	0.457711	
mm_29980.1	chr3	134249352	134249552	-	1	NA	NA	NA	-8869	NR_035435	100316832		NR_035435	ENSMUSG00000084564	Mir1895	Mirn1895|mmu-mir-1895	microRNA 1895	ncRNA	0.000000	0.452736	
mm_121325.1	chr14	113900881	113901081	+	1	NA	NA	NA	-930984	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0.010000	0.368159	
mm_18218.1	chr2	50296608	50296808	-	1	NA	NA	NA	-31	NM_133839	109129	Mm.29214	NM_133839	ENSMUSG00000026766	Mmadhc	2010311D03Rik|AI314967|CblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding	0.100000	0.671642	
mm_138855.1	chr17	41752452	41752652	+	1	NA	NA	NA	-563395	NM_028474	627626	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	0.015000	0.393035	
mm_41992.1	chr5	107726777	107726977	+	1	NA	NA	NA	-1072	NM_001267621	14581	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.080000	0.656716	
mm_106292.1	chr11	118212632	118212832	-	1	NA	NA	NA	10	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.010000	0.557214	
mm_27546.1	chr3	57847444	57847644	-	1	NA	NA	NA	213	NM_019410	18645	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	0.135000	0.761194	
mm_137047.1	chr17	17917481	17917681	+	1	NA	NA	NA	29757	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.005000	0.407960	
mm_140201.1	chr17	83706136	83706336	+	1	NA	NA	NA	73	NM_001171052	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.170000	0.820896	
mm_137520.1	chr17	27203244	27203444	+	1	NA	NA	NA	1094	NM_146075	224640	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	0.025000	0.616915	
mm_51931.1	chr6	91515881	91516081	+	1	NA	NA	NA	-54	NM_026309	67678	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.090000	0.606965	
mm_50417.1	chr6	48746613	48746813	+	1	NA	NA	NA	516	NM_175035	317757	Mm.455917	NM_175035	ENSMUSG00000043505	Gimap5	D630024P16|E230026N22Rik	GTPase, IMAP family member 5	protein-coding	0.005000	0.502488	
mm_145749.1	chr18	64511700	64511900	+	1	NA	NA	NA	4757	NM_027350	70223	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0.005000	0.363184	
mm_32024.1	chr4	95104244	95104444	+	1	NA	NA	NA	-52122	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.005000	0.388060	-35(GCTTTTAAACCT,+,0.00)
mm_75254.1	chr8	40511187	40511387	-	1	NA	NA	NA	467	NM_001271543	18983	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0.085000	0.661692	
mm_11239.1	chr2	29881889	29882089	+	1	NA	NA	NA	-7731	NM_001177661	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.010000	0.567164	
mm_97022.1	chr11	71750919	71751119	+	1	NA	NA	NA	316	NM_177618	216881	Mm.48648	NM_177618	ENSMUSG00000020811	Wscd1	mKIAA0523	WSC domain containing 1	protein-coding	0.165000	0.786070	
mm_57871.1	chr6	129678821	129679021	-	1	NA	NA	NA	52	NM_001288664	16641	Mm.56899	NM_010652	ENSMUSG00000030167	Klrc1	CD159a|NKG2A|NKG2B	killer cell lectin-like receptor subfamily C, member 1	protein-coding	0.015000	0.477612	
mm_123525.1	chr14	66750011	66750211	-	1	NA	NA	NA	114860	NM_001271760	11549	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	0.015000	0.512438	
mm_80147.1	chr9	70914044	70914244	+	1	NA	NA	NA	20664	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.000000	0.447761	-93(GCTTTTAAATGA,+,0.00)
mm_106634.1	chr11	120932754	120932954	-	1	NA	NA	NA	18	NM_027745	71276	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.100000	0.651741	
mm_12195.1	chr2	65668638	65668838	+	1	NA	NA	NA	52	NM_001346680	110876	Mm.220329	NM_001099298	ENSMUSG00000075318	Scn2a	6430408L10|A230052E19Rik|Nav1.2|Scn2a1	sodium channel, voltage-gated, type II, alpha	protein-coding	0.000000	0.353234	-47(GGTCTTTAAAGG,-,0.00),-46(GTCTTTAAAGGA,-,0.00),-45(TCTTTAAAGGAG,+,0.00),-7(TTTTTTAAAGCC,+,0.00)
mm_127508.1	chr15	101473375	101473575	+	1	NA	NA	NA	-3	NM_010667	16679	Mm.383183	NM_010667	ENSMUSG00000067614	Krt86	5430421N21Rik|AI325212|Khb4|Krt2-10|Krt2-11|MHb4	keratin 86	protein-coding	0.020000	0.467662	-87(GCTCATAAAGCC,+,0.00),-32(ATATATAAAAGG,-,0.00)
mm_157383.1	chrX	38043021	38043221	-	1	NA	NA	NA	-7	NM_001034856	194735	Mm.422929	NM_001034856	ENSMUSG00000098348	Btg1-ps2	4930430D24Rik	B cell translocation gene 1, anti-proliferative, pseudogene 2	protein-coding	0.000000	0.522388	
mm_75646.1	chr8	65097639	65097839	-	1	NA	NA	NA	31798	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA	0.000000	0.323383	-38(TCTTTTAAATGG,+,0.00)
mm_97813.1	chr11	82962679	82962879	+	1	NA	NA	NA	-2098	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.005000	0.333333	
mm_38700.1	chr4	145214897	145215097	-	1	NA	NA	NA	-19992	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.020000	0.572139	
mm_35368.1	chr4	32923313	32923513	-	1	NA	NA	NA	92	NM_080471	140577	Mm.214766	NM_080471	ENSMUSG00000040183	Ankrd6	-	ankyrin repeat domain 6	protein-coding	0.035000	0.552239	
mm_21545.1	chr2	164054250	164054450	-	1	NA	NA	NA	16752	NM_025996	67145	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	0.015000	0.552239	
mm_97761.1	chr11	80858314	80858514	+	1	NA	NA	NA	25	NM_029367	75622	Mm.26988	NM_029367	ENSMUSG00000053184	Spaca3	1700025M08Rik|ALLP17|Lyc3|SLLP1|mSLLP1	sperm acrosome associated 3	protein-coding	0.045000	0.572139	
mm_122912.1	chr14	54957696	54957896	-	1	NA	NA	NA	-8654	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.010000	0.522388	-77(GTGTTTTTAAGG,-,0.00),-75(GTTTTTAAGGTC,+,0.00)
mm_171672.1	chr4	4883539	4883739	-	1	NA	NA	NA	-90333	NM_177730	242291	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	0.030000	0.472637	-37(CTCTTTAAAGAG,+,0.00),-37(CTCTTTAAAGAG,-,0.00)
mm_170210.1	chr1	7709224	7709424	-	1	NA	NA	NA	620404	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.020000	0.547264	
mm_162199.1	chrX	126815876	126816076	-	1	NA	NA	NA	18028	NM_177705	237029	Mm.60998	NM_177705	ENSMUSG00000058670	4932411N23Rik	-	RIKEN cDNA 4932411N23 gene	protein-coding	0.000000	0.283582	-28(CTCTTTAAAGCC,+,0.00)
mm_166871.1	chr7	25178527	25178727	-	1	NA	NA	NA	23558	NR_045848	434147	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	0.025000	0.572139	
mm_45804.1	chr5	87568931	87569131	-	1	NA	NA	NA	-25	NM_016771	53315	Mm.6824	NM_016771	ENSMUSG00000029273	Sult1d1	5033411P13Rik|AI987815|ST1d1|SULT-N|Sultn	sulfotransferase family 1D, member 1	protein-coding	0.010000	0.412935	
mm_84458.1	chr9	66580218	66580418	-	1	NA	NA	NA	12797	NM_144937	235441	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.005000	0.373134	-63(GCTTTTATACCT,+,0.00)
mm_41818.1	chr5	103824354	103824554	+	1	NA	NA	NA	69881	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.010000	0.388060	
mm_167826.1	chr9	124423235	124423435	-	1	NA	NA	NA	84	NR_027950	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.125000	0.721393	
mm_72683.1	chr8	84949818	84950018	+	1	NA	NA	NA	2927	NM_144929	234542	Mm.461701	NM_144929	ENSMUSG00000048617	Rtbdn	A330096I21Rik|BC022744|Rtbnd	retbindin	protein-coding	0.025000	0.557214	
mm_56427.1	chr6	97311931	97312131	-	1	NA	NA	NA	-59251	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.040000	0.542289	
mm_105966.1	chr11	115490576	115490776	-	1	NA	NA	NA	-853	NR_136931	102634812	Mm.390379	NR_136931		LOC102634812	-	ribosomal protein L39 pseudogene	pseudo	0.020000	0.601990	
mm_31157.1	chr4	43442265	43442465	+	1	NA	NA	NA	88	NM_011571	21754	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.085000	0.661692	
mm_122957.1	chr14	54968001	54968201	-	1	NA	NA	NA	-686	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.005000	0.552239	
mm_51611.1	chr6	84812064	84812264	+	1	NA	NA	NA	-218256	NM_001177713	232174	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.020000	0.432836	
mm_123194.1	chr14	57999155	57999355	-	1	NA	NA	NA	7	NM_028643	68514	Mm.26834	NM_028643	ENSMUSG00000021973	Micu2	1110008L20Rik|4833427E09Rik|AU041871|Efha1|Smhs2	mitochondrial calcium uptake 2	protein-coding	0.140000	0.716418	
mm_5581.1	chr1	39552046	39552246	-	1	NA	NA	NA	-3306	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.020000	0.442786	-8(CTTTTTAGACAG,+,0.00)
mm_70027.1	chr7	142576222	142576422	-	1	NA	NA	NA	825	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.015000	0.522388	
mm_105506.1	chr11	106193448	106193648	-	1	NA	NA	NA	55	NM_001252448	72149	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	0.085000	0.671642	
mm_126439.1	chr15	80671528	80671728	+	1	NA	NA	NA	-219	NM_145986	213956	Mm.132439	NM_145986	ENSMUSG00000022408	Fam83f	AW544981	family with sequence similarity 83, member F	protein-coding	0.085000	0.686567	
mm_167468.1	chr8	126029263	126029463	+	1	NA	NA	NA	34261	NM_008430	16525	Mm.10800	NM_008430	ENSMUSG00000033998	Kcnk1	AI788889|TWIK-1	potassium channel, subfamily K, member 1	protein-coding	0.045000	0.507463	
mm_99007.1	chr11	98832443	98832643	+	1	NA	NA	NA	-4242	NM_001080925	268480	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0.010000	0.442786	35(TTTTTTAAAGCT,+,0.00)
mm_127586.1	chr15	102331639	102331839	+	1	NA	NA	NA	30	NM_021713	60315	Mm.251638	NM_021713	ENSMUSG00000001285	Myg1	0610023A07Rik|2810433J21Rik|5830429P19Rik|AI325965|Gamm1	melanocyte proliferating gene 1	protein-coding	0.060000	0.582090	
mm_121402.1	chr14	119172799	119172999	+	1	NA	NA	NA	34634	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.030000	0.512438	
mm_122032.1	chr14	29721801	29722001	-	1	NA	NA	NA	-37	NM_009785	12294	Mm.386754	NM_009785	ENSMUSG00000021991	Cacna2d3	Cacnad3|alapha2delta3	calcium channel, voltage-dependent, alpha2/delta subunit 3	protein-coding	0.120000	0.805970	
mm_62975.1	chr7	120102299	120102499	+	1	NA	NA	NA	-27	NM_145586	233806	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	0.060000	0.636816	
mm_62782.1	chr7	112427774	112427974	+	1	NA	NA	NA	168	NM_020606	57342	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding	0.120000	0.726368	
mm_104059.1	chr11	86581267	86581467	-	1	NA	NA	NA	2791	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.040000	0.507463	-34(TACTATATAAGA,-,0.00)
mm_157674.1	chrX	59134657	59134857	-	1	NA	NA	NA	-321	NM_010200	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding	0.090000	0.706468	
mm_81779.1	chr9	114688741	114688941	+	1	NA	NA	NA	10	NM_146229	235661	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	0.140000	0.721393	
mm_81165.1	chr9	107299258	107299458	+	1	NA	NA	NA	2699	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.005000	0.492537	
mm_126597.1	chr15	82358491	82358691	+	1	NA	NA	NA	-4300	NM_025987	67130	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	0.015000	0.522388	
mm_157378.1	chrX	37878935	37879135	-	1	NA	NA	NA	-91	NM_001004193	434768	Mm.336025	NM_001004193	ENSMUSG00000064137	Rhox8	Tox	reproductive homeobox 8	protein-coding	0.015000	0.527363	
mm_122087.1	chr14	30625000	30625200	-	1	NA	NA	NA	1108	NM_011103	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.010000	0.606965	
mm_57188.1	chr6	122848934	122849134	-	1	NA	NA	NA	7123	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.000000	0.462687	
mm_139470.1	chr17	55970437	55970637	+	1	NA	NA	NA	55	NM_009168	20420	Mm.20908	NM_009168	ENSMUSG00000039154	Shd	AI413439	src homology 2 domain-containing transforming protein D	protein-coding	0.135000	0.751244	
mm_21530.1	chr2	163645010	163645210	-	1	NA	NA	NA	33	NM_012032	26943	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	0.115000	0.681592	
mm_103959.1	chr11	84129529	84129729	-	1	NA	NA	NA	-61	NM_172562	217031	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	0.185000	0.796020	
mm_4950.1	chr1	191224352	191224552	+	1	NA	NA	NA	-41119	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.125000	0.646766	-98(CCTTTAAGACAG,+,0.00)
mm_73962.1	chr8	120488090	120488290	+	1	NA	NA	NA	-676	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.050000	0.626866	
mm_96701.1	chr11	69642687	69642887	+	1	NA	NA	NA	9816	NM_011814	23879	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0.010000	0.398010	
mm_8766.1	chr1	160792839	160793039	-	1	NA	NA	NA	-1	NM_013862	29809	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0.150000	0.791045	
mm_166560.1	chr6	45808788	45808988	-	1	NA	NA	NA	748827	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.000000	0.402985	-11(CATCATAAAAGG,-,0.00)
mm_28153.1	chr3	87748462	87748662	-	1	NA	NA	NA	61	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding	0.040000	0.636816	
mm_45746.1	chr5	86632324	86632524	-	1	NA	NA	NA	0	NM_178730	243083	Mm.106867	NM_178730	ENSMUSG00000048764	Tmprss11f	4631408C20|4732406D01Rik	transmembrane protease, serine 11f	protein-coding	0.010000	0.422886	
mm_48324.1	chr5	138995245	138995445	-	1	NA	NA	NA	-392	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.185000	0.855721	
mm_73502.1	chr8	107293409	107293609	+	1	NA	NA	NA	39	NM_133957	54446	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0.110000	0.711443	
mm_41215.1	chr5	88581381	88581581	+	1	NA	NA	NA	-2032	NM_001289777	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.010000	0.492537	
mm_67378.1	chr7	79842009	79842209	-	1	NA	NA	NA	243	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.030000	0.562189	
mm_20738.1	chr2	137116526	137116726	-	1	NA	NA	NA	-106	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.075000	0.537313	
mm_11319.1	chr2	30392353	30392553	+	1	NA	NA	NA	199	NM_001290508	57170	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	0.090000	0.671642	
mm_29757.1	chr3	127162059	127162259	-	1	NA	NA	NA	854	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.045000	0.611940	
mm_163936.1	chr14	50396987	50397187	-	1	NA	NA	NA	4329	NM_146666	258660	Mm.377623	NM_146666	ENSMUSG00000047716	Olfr736	MOR106-5	olfactory receptor 736	protein-coding	0.000000	0.328358	
mm_64264.1	chr7	141749433	141749633	+	1	NA	NA	NA	-39478	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.010000	0.532338	
mm_97059.1	chr11	72689906	72690106	+	1	NA	NA	NA	4	NM_009671	11736	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	0.070000	0.611940	
mm_81515.1	chr9	110035275	110035475	+	1	NA	NA	NA	-16646	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.010000	0.487562	
mm_164861.1	chr18	53744386	53744586	-	1	NA	NA	NA	61	NM_178686	225523	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	0.135000	0.771144	
mm_173214.1	chrX	73242951	73243151	-	1	NA	NA	NA	79	NM_183094	72891	Mm.104764	NM_183094	ENSMUSG00000031362	Xlr4c	2900036K24Rik	X-linked lymphocyte-regulated 4C	protein-coding	0.045000	0.552239	
mm_26800.1	chr3	9884633	9884833	-	1	NA	NA	NA	-51054	NM_001195031	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.000000	0.328358	
mm_3577.1	chr1	151089095	151089295	+	1	NA	NA	NA	-48839	NR_038011	402734	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.005000	0.457711	
mm_46344.1	chr5	102052963	102053163	-	1	NA	NA	NA	16858	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.020000	0.527363	
mm_157045.1	chrX	8005841	8006041	-	1	NA	NA	NA	12551	NM_027227	69824	Mm.279756	NM_027227	ENSMUSG00000031163	Glod5	2010001H14Rik|AV061890	glyoxalase domain containing 5	protein-coding	0.035000	0.492537	-53(GTTTTTAAACCG,+,0.00)
mm_32530.1	chr4	108879058	108879258	+	1	NA	NA	NA	88	NM_023537	69908	Mm.41580	NM_023537	ENSMUSG00000003411	Rab3b	2610528C18Rik	RAB3B, member RAS oncogene family	protein-coding	0.075000	0.681592	
mm_149379.1	chr19	11377013	11377213	+	1	NA	NA	NA	1625	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.010000	0.328358	
mm_39370.1	chr5	10460298	10460498	+	1	NA	NA	NA	-404631	NR_003596	623849	Mm.335888	NR_003596	ENSMUSG00000091422	Gm6455	EG623849	predicted gene 6455	pseudo	0.000000	0.373134	
mm_96014.1	chr11	59542787	59542987	+	1	NA	NA	NA	201	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.005000	0.373134	
mm_102039.1	chr11	51857916	51858116	-	1	NA	NA	NA	-535	NM_199299	76901	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.090000	0.711443	
mm_66854.1	chr7	52005599	52005799	-	1	NA	NA	NA	15	NR_027704	75744	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	0.070000	0.666667	
mm_153598.1	chr19	43752797	43752997	-	1	NA	NA	NA	103	NM_144874	226139	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	0.080000	0.651741	
mm_24144.1	chr3	88324953	88325153	+	1	NA	NA	NA	30	NM_020003	56700	Mm.439922	NM_020003	ENSMUSG00000001418	Glmp	0610031J06Rik|AB027141|NCU-G1	glycosylated lysosomal membrane protein	protein-coding	0.020000	0.527363	-73(GCCCCTTTAAGA,-,0.00)
mm_10516.1	chr2	16356590	16356790	+	1	NA	NA	NA	386	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.070000	0.611940	
mm_146551.1	chr18	6220829	6221029	-	1	NA	NA	NA	20595	NM_008448	16573	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.015000	0.422886	
mm_69249.1	chr7	127824743	127824943	-	1	NA	NA	NA	-312	NM_024414	56216	Mm.439759	NM_024414	ENSMUSG00000030806	Stx1b	Stx1b2|Stx1bl|Syn1b	syntaxin 1B	protein-coding	0.025000	0.512438	
mm_92236.1	chr10	69213011	69213211	-	1	NA	NA	NA	-13	NM_001331193	320700	Mm.396529	NM_001331193	ENSMUSG00000090622	A930033H14Rik	-	RIKEN cDNA A930033H14 gene	protein-coding	0.105000	0.686567	
mm_24507.1	chr3	92502454	92502654	+	1	NA	NA	NA	-2061	NM_173070	229562	Mm.246590	NM_173070	ENSMUSG00000045566	Sprr4	-	small proline-rich protein 4	protein-coding	0.000000	0.432836	
mm_126704.1	chr15	85205934	85206134	+	1	NA	NA	NA	26	NM_010180	14114	Mm.297992	NM_010180	ENSMUSG00000006369	Fbln1	-	fibulin 1	protein-coding	0.130000	0.756219	
mm_72934.1	chr8	91313468	91313668	+	1	NA	NA	NA	43	NM_011936	26383	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	0.085000	0.636816	
mm_23732.1	chr3	69029305	69029505	+	1	NA	NA	NA	15337	NM_025863	66949	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.010000	0.313433	-32(GGCCATAAATGC,-,0.00),-14(ATCTTTATAGGG,-,0.00)
mm_171959.1	chr5	8266497	8266697	+	1	NA	NA	NA	101563	NM_001007221	11496	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.025000	0.482587	
mm_170491.1	chr19	22851949	22852149	+	1	NA	NA	NA	101444	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.030000	0.462687	
mm_123283.1	chr14	61436951	61437151	-	1	NA	NA	NA	2896	NM_008466	16648	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0.010000	0.368159	
mm_53200.1	chr6	125565491	125565691	+	1	NA	NA	NA	12643	NM_011708	22371	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.010000	0.482587	
mm_4545.1	chr1	177139761	177139961	+	1	NA	NA	NA	108906	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.015000	0.477612	
mm_152243.1	chr19	8713790	8713990	-	1	NA	NA	NA	7	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.070000	0.621891	-48(CTCTTTAAGAGG,-,0.00),-47(TCTTTAAGAGGC,+,0.00)
mm_123537.1	chr14	66814904	66815104	-	1	NA	NA	NA	53596	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.025000	0.582090	
mm_161168.1	chr13	36117534	36117734	+	1	NA	NA	NA	-9	NM_024274	69955	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.090000	0.671642	
mm_66494.1	chr7	45056960	45057160	-	1	NA	NA	NA	-4179	NM_175022	233210	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	0.005000	0.557214	-87(GCCTTGAAAAGG,-,0.00)
mm_97259.1	chr11	75759213	75759413	+	1	NA	NA	NA	26426	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.030000	0.427861	-71(GCTTTTATATCA,+,0.00)
mm_117968.1	chr13	99900557	99900757	-	1	NA	NA	NA	26	NM_013732	27220	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	0.070000	0.666667	-30(GGCTATAAGAAG,-,0.00)
mm_17440.1	chr2	28084784	28084984	-	1	NA	NA	NA	-6	NM_010190	14134	Mm.182935	NM_010190	ENSMUSG00000026835	Fcnb	Fcn2	ficolin B	protein-coding	0.015000	0.562189	-34(CCCTATAAGAGC,-,0.00)
mm_70051.1	chr7	142578047	142578247	-	1	NA	NA	NA	-1	NR_130973	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.050000	0.666667	
mm_60223.1	chr7	43567515	43567715	+	1	NA	NA	NA	5245	NM_001008549	210104	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0.010000	0.437811	
mm_119372.1	chr14	41122693	41122893	+	1	NA	NA	NA	-8995	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.000000	0.447761	
mm_25662.1	chr3	121723510	121723710	+	1	NA	NA	NA	73	NM_010171	14066	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0.140000	0.731343	-33(CCCTTTATAACG,+,0.00)
mm_7200.1	chr1	93015957	93016157	-	1	NA	NA	NA	9723	NM_001159658	208760	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0.015000	0.497512	
mm_130285.1	chr15	96996879	96997079	-	1	NA	NA	NA	58977	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.040000	0.447761	
mm_59835.1	chr7	29307916	29308116	+	1	NA	NA	NA	4011	NM_013874	29861	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.080000	0.731343	
mm_74885.1	chr8	25101663	25101863	-	1	NA	NA	NA	48	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.070000	0.676617	
mm_95353.1	chr11	48817475	48817675	+	1	NA	NA	NA	-184	NM_145377	211007	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0.065000	0.611940	
mm_30184.1	chr3	144570082	144570282	-	1	NA	NA	NA	34	NM_011828	23908	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.145000	0.786070	
mm_12597.1	chr2	74673854	74674054	+	1	NA	NA	NA	-1059	NM_008274	15432	Mm.57124	NM_008274	ENSMUSG00000001823	Hoxd12	Hox-4.7|Hox-5.6	homeobox D12	protein-coding	0.040000	0.587065	
mm_2368.1	chr1	93211623	93211823	+	1	NA	NA	NA	-24174	NM_172463	208777	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	0.035000	0.611940	
mm_3193.1	chr1	135810782	135810982	+	1	NA	NA	NA	-7716	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding	0.010000	0.547264	
mm_72148.1	chr8	72144472	72144672	+	1	NA	NA	NA	9280	NM_001001491	326618	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	0.010000	0.482587	
mm_50361.1	chr6	48647296	48647496	+	1	NA	NA	NA	35	NM_212486	243374	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	0.005000	0.522388	
mm_31828.1	chr4	70378022	70378222	+	1	NA	NA	NA	32313	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.035000	0.447761	
mm_118246.1	chr13	111884223	111884423	-	1	NA	NA	NA	16387	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.030000	0.567164	
mm_85894.1	chr9	111055453	111055653	-	1	NA	NA	NA	1691	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.035000	0.537313	55(GCCTTTATGAGA,-,0.00)
mm_93539.1	chr10	115384393	115384593	-	1	NA	NA	NA	-58	NM_025780	66816	Mm.32314	NM_025780	ENSMUSG00000020137	Thap2	2900040O07Rik|9030625G08Rik|AI450385|AI649097	THAP domain containing, apoptosis associated protein 2	protein-coding	0.070000	0.676617	
mm_93117.1	chr10	91153753	91153953	-	1	NA	NA	NA	16697	NM_001283048	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.000000	0.338308	
mm_68114.1	chr7	102099801	102100001	-	1	NA	NA	NA	328	NR_111935	11875	Mm.2816	NM_007491	ENSMUSG00000070424	Art5	ARTC5|Yac-2	ADP-ribosyltransferase 5	protein-coding	0.050000	0.616915	
mm_98205.1	chr11	87797224	87797424	+	1	NA	NA	NA	3540	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.035000	0.557214	
mm_47940.1	chr5	135351195	135351395	-	1	NA	NA	NA	-1251	NM_001277891	94244	Mm.26037	NM_033571	ENSMUSG00000040013	Fkbp6	1700008G22Rik|36kDa|AU017274|D5Ertd724e|FKBP-36|FKBP-6	FK506 binding protein 6	protein-coding	0.015000	0.447761	
mm_106522.1	chr11	120561129	120561329	-	1	NA	NA	NA	-10097	NM_026814	68701	Mm.46477	NM_026814	ENSMUSG00000025129	Ppp1r27	1110033I14Rik|Dysfip1|toonin	protein phosphatase 1, regulatory subunit 27	protein-coding	0.030000	0.537313	
mm_166306.1	chr5	105731762	105731962	+	1	NA	NA	NA	31052	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.035000	0.572139	
mm_118425.1	chr14	7937192	7937392	+	1	NA	NA	NA	56890	NM_007870	13421	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.050000	0.542289	
mm_158602.1	chrX	152016186	152016386	-	1	NA	NA	NA	9	NM_025660	66611	Mm.158120	NM_025660	ENSMUSG00000025257	Ribc1	2610028I09Rik|W08639	RIB43A domain with coiled-coils 1	protein-coding	0.070000	0.587065	
mm_166393.1	chr5	135009927	135010127	+	1	NA	NA	NA	571	NR_033794	68758	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.040000	0.557214	
mm_31335.1	chr4	46468571	46468771	+	1	NA	NA	NA	17745	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.020000	0.537313	
mm_158846.1	chrX	169978769	169978969	-	1	NA	NA	NA	48	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.020000	0.487562	
mm_77311.1	chr8	117673569	117673769	-	1	NA	NA	NA	-2154	NM_028725	74032	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	0.045000	0.562189	
mm_48121.1	chr5	137139031	137139231	-	1	NA	NA	NA	-22924	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.030000	0.502488	
mm_123063.1	chr14	55671995	55672195	-	1	NA	NA	NA	-140	NM_177992	105446	Mm.390685	NM_177992	ENSMUSG00000002326	Gmpr2	1810008P16Rik|5730544D12Rik|AA959850|GMPR 2	guanosine monophosphate reductase 2	protein-coding	0.065000	0.582090	
mm_121099.1	chr14	99339058	99339258	+	1	NA	NA	NA	40467	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.025000	0.497512	
mm_122963.1	chr14	54973069	54973269	-	1	NA	NA	NA	2607	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.005000	0.517413	
mm_26286.1	chr3	142506550	142506750	+	1	NA	NA	NA	9716	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.020000	0.333333	
mm_72825.1	chr8	88199434	88199634	+	1	NA	NA	NA	321	NM_001164498	214627	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0.190000	0.850746	
mm_116957.1	chr13	56137082	56137282	-	1	NA	NA	NA	-1632	NM_001159513	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.005000	0.482587	
mm_41117.1	chr5	87780858	87781058	+	1	NA	NA	NA	6508	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.000000	0.253731	
mm_21583.1	chr2	164237190	164237390	-	1	NA	NA	NA	1051	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.005000	0.393035	
mm_90514.1	chr10	128043023	128043223	+	1	NA	NA	NA	7777	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.005000	0.557214	
mm_47490.1	chr5	124005533	124005733	-	1	NA	NA	NA	8781	NR_105999	102465625		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.030000	0.537313	
mm_151305.1	chr19	55742192	55742392	+	1	NA	NA	NA	482	NM_001142923	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.040000	0.398010	
mm_71500.1	chr8	46806376	46806576	+	1	NA	NA	NA	66731	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.030000	0.487562	
mm_155779.1	chrX	96455417	96455617	+	1	NA	NA	NA	81	NM_010417	15203	Mm.277092	NM_010417	ENSMUSG00000031209	Heph	C130006F04Rik|Cpl|mKIAA0698|sla	hephaestin	protein-coding	0.010000	0.502488	
mm_97214.1	chr11	75630689	75630889	+	1	NA	NA	NA	-231	NM_008916	19062	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.125000	0.691542	
mm_13061.1	chr2	91115275	91115475	+	1	NA	NA	NA	-2769	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.095000	0.681592	
mm_150525.1	chr19	39060907	39061107	+	1	NA	NA	NA	1	NM_028191	72303	Mm.482578	NM_028191	ENSMUSG00000067231	Cyp2c65	2210009K14Rik	cytochrome P450, family 2, subfamily c, polypeptide 65	protein-coding	0.005000	0.398010	-33(CCTTATATAAGC,+,0.00),-33(CCTTATATAAGC,-,0.00)
mm_164375.1	chr16	26692625	26692825	-	1	NA	NA	NA	62777	NR_105063	100504628	Mm.393275	NR_105063	ENSMUSG00000092545	Gm20319	-	predicted gene, 20319	ncRNA	0.005000	0.378109	
mm_168376.1	chr11	21906885	21907085	+	1	NA	NA	NA	94666	NM_011023	18423	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.030000	0.363184	
mm_122624.1	chr14	51145539	51145739	-	1	NA	NA	NA	1128	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.020000	0.532338	
mm_62646.1	chr7	107670248	107670448	+	1	NA	NA	NA	63504	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.000000	0.383085	13(CCTTTAAAATTC,+,0.00),50(TACTTTTAAAGC,-,0.00),51(ACTTTTAAAGCA,+,0.00)
mm_7999.1	chr1	134405533	134405733	-	1	NA	NA	NA	-357	NM_028057	72017	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	0.015000	0.442786	
mm_108486.1	chr12	83667995	83668195	+	1	NA	NA	NA	-20468	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.055000	0.407960	
mm_42858.1	chr5	122210533	122210733	+	1	NA	NA	NA	346	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.020000	0.517413	
mm_135491.1	chr16	46120060	46120260	-	1	NA	NA	NA	88	NM_032465	84544	Mm.29204	NM_032465	ENSMUSG00000022657	Cd96	1700109I12Rik|Tactile	CD96 antigen	protein-coding	0.030000	0.482587	
mm_17939.1	chr2	36049271	36049471	-	1	NA	NA	NA	-79	NM_026703	68375	Mm.19834	NM_026703	ENSMUSG00000026895	Ndufa8	0610033L03Rik|AW261656	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8	protein-coding	0.090000	0.656716	
mm_12759.1	chr2	79255503	79255703	+	1	NA	NA	NA	177	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.075000	0.616915	
mm_6188.1	chr1	65113436	65113636	-	1	NA	NA	NA	9678	NM_175293	98303	Mm.348057	NM_175293	ENSMUSG00000044816	D630023F18Rik	AI314969	RIKEN cDNA D630023F18 gene	protein-coding	0.000000	0.263682	
mm_138643.1	chr17	35866588	35866788	+	1	NA	NA	NA	73	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.085000	0.716418	
mm_83888.1	chr9	55540809	55541009	-	1	NA	NA	NA	-240	NM_027397	104360	Mm.273996	NM_027397	ENSMUSG00000032318	Isl2	3110001N10Rik	insulin related protein 2 (islet 2)	protein-coding	0.070000	0.626866	
mm_120331.1	chr14	63339869	63340069	+	1	NA	NA	NA	77218	NM_007549	12143	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.020000	0.472637	
mm_100123.1	chr11	115900058	115900258	+	1	NA	NA	NA	19	NM_183259	66528	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	0.030000	0.567164	
mm_82122.1	chr9	123478660	123478860	+	1	NA	NA	NA	59	NM_013860	29806	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.160000	0.810945	
mm_71685.1	chr8	61224136	61224336	+	1	NA	NA	NA	65	NM_021506	59009	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	0.165000	0.791045	
mm_132278.1	chr16	32975701	32975901	+	1	NA	NA	NA	61701	NM_001310672	70144	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	0.030000	0.437811	-83(TGCTTTTTAAGC,-,0.00),67(ACATTTAAAGCC,+,0.00)
mm_165667.1	chr3	88563682	88563882	+	1	NA	NA	NA	10066	NM_033526	94232	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	0.015000	0.497512	
mm_161343.1	chr14	52237700	52237900	-	1	NA	NA	NA	-228	NM_201637	67772	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	0.005000	0.402985	
mm_36730.1	chr4	99120854	99121054	-	1	NA	NA	NA	-39	NM_026082	67299	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0.145000	0.771144	
mm_129262.1	chr15	76816928	76817128	-	1	NA	NA	NA	1142	NM_001168288	223666	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0.045000	0.572139	
mm_72691.1	chr8	84969596	84969796	+	1	NA	NA	NA	74	NM_011563	21672	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0.080000	0.597015	-36(ACGCATAAAAGG,-,0.00)
mm_92454.1	chr10	77799088	77799288	-	1	NA	NA	NA	-55	NM_001205034	100503388	Mm.482880	NM_001205034	ENSMUSG00000096380	Gm19668	-	predicted gene, 19668	protein-coding	0.035000	0.557214	
mm_135197.1	chr16	36455289	36455489	-	1	NA	NA	NA	3	NM_025288	20863	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	0.005000	0.447761	-36(CCTTTAAAACCC,+,0.00)
mm_164410.1	chr16	36580079	36580279	+	1	NA	NA	NA	-18045	NM_013803	12374	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.015000	0.442786	
mm_171455.1	chr4	145510695	145510895	+	1	NA	NA	NA	36	NM_001324553	101056073	Mm.276881	NM_001324553	ENSMUSG00000078503	LOC101056073	-	zinc finger protein 501-like	protein-coding	0.020000	0.517413	
mm_80358.1	chr9	75211532	75211732	+	1	NA	NA	NA	-20382	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.010000	0.383085	
mm_106026.1	chr11	116027870	116028070	-	1	NA	NA	NA	-2346	NM_001286006	217331	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0.010000	0.462687	
mm_12691.1	chr2	76369896	76370096	+	1	NA	NA	NA	12	NM_153405	241490	Mm.33310	NM_153405	ENSMUSG00000042369	Rbm45	Drb1|Drbp1|G430095G15Rik	RNA binding motif protein 45	protein-coding	0.100000	0.691542	
mm_147729.1	chr18	61014073	61014273	-	1	NA	NA	NA	26	NM_201353	240332	Mm.39846	NM_201353	ENSMUSG00000052026	Slc6a7	AW455934|PROT	solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	protein-coding	0.125000	0.746269	
mm_104620.1	chr11	97284632	97284832	-	1	NA	NA	NA	-4156	NM_008942	19155	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0.010000	0.373134	51(CCTTTTAAATTT,+,0.00)
mm_97369.1	chr11	77607860	77608060	+	1	NA	NA	NA	-145	NM_144825	216965	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	0.120000	0.681592	
mm_68901.1	chr7	126450406	126450606	-	1	NA	NA	NA	12567	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.020000	0.502488	-77(CTGTTTTAAAGG,-,0.00)
mm_26062.1	chr3	135826202	135826402	+	1	NA	NA	NA	512	NM_001135150	67547	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.055000	0.626866	
mm_23498.1	chr3	60524256	60524456	+	1	NA	NA	NA	23177	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.412935	
mm_138958.1	chr17	44188571	44188771	+	1	NA	NA	NA	99	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	0.035000	0.542289	
mm_63079.1	chr7	122219582	122219782	+	1	NA	NA	NA	186	NM_027363	70261	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.055000	0.626866	
mm_47964.1	chr5	135744070	135744270	-	1	NA	NA	NA	2	NM_172541	215210	Mm.11688	NM_172541	ENSMUSG00000039886	Tmem120a	2010310D06Rik|Tmpit	transmembrane protein 120A	protein-coding	0.125000	0.736318	
mm_141662.1	chr17	33780536	33780736	-	1	NA	NA	NA	939	NM_020581	57875	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	0.025000	0.517413	
mm_32796.1	chr4	117019319	117019519	+	1	NA	NA	NA	11	NM_001111277	108067	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	0.115000	0.676617	
mm_26375.1	chr3	142565259	142565459	+	1	NA	NA	NA	4863	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.020000	0.492537	
mm_29629.1	chr3	121548059	121548259	-	1	NA	NA	NA	-15815	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.025000	0.467662	
mm_150744.1	chr19	43782946	43783146	+	1	NA	NA	NA	738	NM_013806	12780	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0.000000	0.492537	
mm_154197.1	chr19	58943521	58943721	-	1	NA	NA	NA	51	NM_001327998	73442	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0.115000	0.681592	
mm_123572.1	chr14	66911001	66911201	-	1	NA	NA	NA	-107	NM_175498	239157	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	0.090000	0.716418	
mm_167748.1	chr9	109848331	109848531	+	1	NA	NA	NA	1025	NM_009921	12796	Mm.3834	NM_009921	ENSMUSG00000038357	Camp	CAP18|Cnlp|Cramp|FALL39|MCLP	cathelicidin antimicrobial peptide	protein-coding	0.030000	0.527363	
mm_60506.1	chr7	44479419	44479619	+	1	NA	NA	NA	-4998	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.447761	
mm_143737.1	chr17	81481393	81481593	-	1	NA	NA	NA	256894	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.268657	
mm_7355.1	chr1	106642170	106642370	-	1	NA	NA	NA	72020	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.025000	0.388060	
mm_117684.1	chr13	94246489	94246689	-	1	NA	NA	NA	38692	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.010000	0.472637	
mm_22446.1	chr2	181697732	181697932	-	1	NA	NA	NA	610	NM_199023	277496	Mm.212749	NM_199023	ENSMUSG00000045794	Lkaaear1	4930526D03Rik|Gm692	LKAAEAR motif containing 1 (IKAAEAR murine motif)	protein-coding	0.020000	0.457711	
mm_79657.1	chr9	59656466	59656666	+	1	NA	NA	NA	198	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.120000	0.696517	
mm_105805.1	chr11	110251599	110251799	-	1	NA	NA	NA	77	NM_147218	76184	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	0.020000	0.497512	
mm_67569.1	chr7	81934202	81934402	-	1	NA	NA	NA	157	NM_013886	29877	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfrp3	2700022B06Rik|HRP-3	hepatoma-derived growth factor, related protein 3	protein-coding	0.165000	0.776119	
mm_20929.1	chr2	150855832	150856032	-	1	NA	NA	NA	48799	NM_024465	76192	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.005000	0.388060	
mm_82556.1	chr9	20979211	20979411	-	1	NA	NA	NA	-2518	NM_010333	14739	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0.010000	0.537313	
mm_20410.1	chr2	129300070	129300270	-	1	NA	NA	NA	2800	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.000000	0.313433	
mm_112020.1	chr12	111377693	111377893	-	1	NA	NA	NA	-75	NM_183016	217866	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0.170000	0.771144	
mm_64405.1	chr7	142511193	142511393	+	1	NA	NA	NA	-4522	NR_033261	677289	Mm.350054	NR_033261	ENSMUSG00000043795	Prr33	ENSMUSG00000043795|Gm14492|OTTMUSG00000016823	proline rich 33	ncRNA	0.020000	0.527363	
mm_125729.1	chr15	73155501	73155701	+	1	NA	NA	NA	29346	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.020000	0.457711	
mm_153585.1	chr19	43506914	43507114	-	1	NA	NA	NA	17591	NM_010324	14718	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.035000	0.582090	
mm_24262.1	chr3	89187382	89187582	+	1	NA	NA	NA	4257	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.060000	0.691542	
mm_37243.1	chr4	118144186	118144386	-	1	NA	NA	NA	-9340	NM_001161774	20441	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.025000	0.542289	
mm_170135.1	chr17	39847608	39847808	+	1	NA	NA	NA	4711	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.085000	0.552239	
mm_49539.1	chr6	30175725	30175925	+	1	NA	NA	NA	-798	NR_038124	100463519	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	0.120000	0.681592	-68(CCCTTTATAGCG,+,0.00)
mm_1220.1	chr1	62735315	62735515	+	1	NA	NA	NA	32098	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.000000	0.318408	
mm_100696.1	chr11	3529956	3530156	-	1	NA	NA	NA	9236	NM_013870	29856	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.025000	0.636816	
mm_159939.1	chr6	82402182	82402382	+	1	NA	NA	NA	-193	NM_009313	21336	Mm.8055	NM_009313	ENSMUSG00000030043	Tacr1	Nk1r|Spr|Tac1r	tachykinin receptor 1	protein-coding	0.050000	0.621891	
mm_14904.1	chr2	150305654	150305854	+	1	NA	NA	NA	48237	NM_001142410	100216455	Mm.484816	NM_001142410	ENSMUSG00000079008	Gm14124	EG640962|ENSMUSG00000074735|Gm10749|OTTMUSG00000015734	predicted gene 14124	protein-coding	0.010000	0.402985	
mm_15449.1	chr2	157402953	157403153	+	1	NA	NA	NA	-21240	NM_009271	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.005000	0.442786	
mm_46031.1	chr5	91761583	91761783	-	1	NA	NA	NA	5617	NR_045383	73452	Mm.396233	NR_045383	ENSMUSG00000101978	1700063O14Rik	-	RIKEN cDNA 1700063O14 gene	ncRNA	0.040000	0.447761	
mm_2808.1	chr1	130865696	130865896	+	1	NA	NA	NA	19	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.005000	0.462687	
mm_29592.1	chr3	119737621	119737821	-	1	NA	NA	NA	45667	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.000000	0.358209	
mm_142232.1	chr17	37480908	37481108	-	1	NA	NA	NA	2521	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.005000	0.283582	
mm_67830.1	chr7	98360353	98360553	-	1	NA	NA	NA	835	NM_001168540	244152	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.050000	0.631841	
mm_15299.1	chr2	155385803	155386003	+	1	NA	NA	NA	4047	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.035000	0.606965	-30(CCCTATAGACAG,+,0.00)
mm_62232.1	chr7	98563093	98563293	+	1	NA	NA	NA	68971	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.020000	0.547264	
mm_132348.1	chr16	33891850	33892050	+	1	NA	NA	NA	62285	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.010000	0.537313	
mm_97142.1	chr11	75271980	75272180	+	1	NA	NA	NA	76303	NM_001164223	68275	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0.000000	0.432836	
mm_13454.1	chr2	105660679	105660879	+	1	NA	NA	NA	564	NR_117095	103164605	Mm.444995	NR_117095	ENSMUSG00000102424	Paupar	-	Pax6 upstream antisense RNA	ncRNA	0.060000	0.601990	-6(GCTTTAAGAGTT,+,0.00)
mm_127737.1	chr15	103298697	103298897	+	1	NA	NA	NA	11641	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.005000	0.497512	
mm_84972.1	chr9	85323291	85323491	-	1	NA	NA	NA	3733	NM_001160378	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.005000	0.268657	6(ACCTATATAAAG,-,0.00)
mm_45182.1	chr5	51797124	51797324	-	1	NA	NA	NA	-229499	NR_132764	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.005000	0.368159	
mm_99844.1	chr11	109361839	109362039	+	1	NA	NA	NA	-855	NM_010303	14674	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0.035000	0.527363	
mm_79043.1	chr9	46216028	46216228	+	1	NA	NA	NA	-12502	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.015000	0.542289	
mm_117890.1	chr13	99422761	99422961	-	1	NA	NA	NA	-10035	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.025000	0.507463	-49(GCTTTACAAGGG,+,0.00)
mm_134984.1	chr16	32099625	32099825	-	1	NA	NA	NA	2	NM_001111025	72084	Mm.37613	NM_024464	ENSMUSG00000023791	Pigx	2010319C14Rik|PIG-X	phosphatidylinositol glycan anchor biosynthesis, class X	protein-coding	0.085000	0.646766	
mm_112435.1	chr13	4725487	4725687	+	1	NA	NA	NA	-116423	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.000000	0.482587	-39(GACCATAAAAAG,-,0.00),-37(CCATAAAAAGGG,+,0.00)
mm_62475.1	chr7	101863657	101863857	+	1	NA	NA	NA	-6567	NM_001303239	14276	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0.010000	0.462687	
mm_140030.1	chr17	74316370	74316570	+	1	NA	NA	NA	-37	NM_001146223	66310	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0.130000	0.716418	
mm_49460.1	chr6	29402796	29402996	+	1	NA	NA	NA	3970	NM_001201378	232664	Mm.251303	NM_145574	ENSMUSG00000029769	Ccdc136	4921511K06Rik|BC006583	coiled-coil domain containing 136	protein-coding	0.105000	0.721393	
mm_15187.1	chr2	154200278	154200478	+	1	NA	NA	NA	-2	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.010000	0.582090	
mm_10545.1	chr2	16565306	16565506	+	1	NA	NA	NA	209102	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.005000	0.303483	
mm_95736.1	chr11	54691332	54691532	+	1	NA	NA	NA	95286	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.005000	0.507463	
mm_36902.1	chr4	107803586	107803786	-	1	NA	NA	NA	1427	NM_001080926	16975	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0.065000	0.626866	
mm_165923.1	chr4	62280279	62280479	+	1	NA	NA	NA	-6050	NM_025286	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.015000	0.427861	
mm_110572.1	chr12	56345775	56345975	-	1	NA	NA	NA	19	NM_145442	217588	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0.050000	0.567164	
mm_127549.1	chr15	102144621	102144821	+	1	NA	NA	NA	535	NM_008344	16012	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	0.090000	0.676617	
mm_91219.1	chr10	22010011	22010211	-	1	NA	NA	NA	15445	NM_011361	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.020000	0.437811	
mm_145458.1	chr18	60238770	60238970	+	1	NA	NA	NA	26793	NM_001033767	240327	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.000000	0.432836	-74(CCCTTTAGAGGA,+,0.00)
mm_120507.1	chr14	66296956	66297156	+	1	NA	NA	NA	31	NM_029979	66854	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	0.090000	0.676617	
mm_91254.1	chr10	22820038	22820238	-	1	NA	NA	NA	-10	NM_011545	21412	Mm.16497	NM_011545	ENSMUSG00000045680	Tcf21	Pod-1|Pod1|bHLHa23|capsulin|epc|epicardin	transcription factor 21	protein-coding	0.040000	0.557214	
mm_29528.1	chr3	116655473	116655673	-	1	NA	NA	NA	7104	NM_008246	15247	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	0.000000	0.333333	-48(GTTTTTATAAGG,+,0.00),-48(GTTTTTATAAGG,-,0.00)
mm_61779.1	chr7	83653769	83653969	+	1	NA	NA	NA	21852	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.010000	0.517413	
mm_38417.1	chr4	139130960	139131160	-	1	NA	NA	NA	-23	NR_033745	433771	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	0.115000	0.636816	
mm_78959.1	chr9	45189403	45189603	+	1	NA	NA	NA	-6263	NM_001198971	408059	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	-	cDNA sequence BC049352	protein-coding	0.015000	0.437811	
mm_126425.1	chr15	80572449	80572649	+	1	NA	NA	NA	-48	NM_001289442	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.025000	0.597015	
mm_165105.1	chr19	56396985	56397185	+	1	NA	NA	NA	-44	NM_007611	12369	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.130000	0.726368	
mm_36413.1	chr4	78180791	78180991	-	1	NA	NA	NA	31004	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.412935	
mm_138114.1	chr17	34137203	34137403	+	1	NA	NA	NA	-8113	NM_010388	15000	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0.040000	0.552239	
mm_128349.1	chr15	39857368	39857568	-	1	NA	NA	NA	2	NM_001164466	64705	Mm.275974	NM_022722	ENSMUSG00000022304	Dpys	1200017I10Rik|1300004I01Rik|DHP|DHPase	dihydropyrimidinase	protein-coding	0.030000	0.572139	
mm_138890.1	chr17	43535104	43535304	+	1	NA	NA	NA	8435	NM_001254953	100043332	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	0.030000	0.522388	
mm_133894.1	chr16	97535205	97535405	+	1	NA	NA	NA	-776	NR_003508	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.015000	0.532338	
mm_172796.1	chr9	110960617	110960817	+	1	NA	NA	NA	9172	NM_028838	74249	Mm.307615	NM_028838	ENSMUSG00000032495	Lrrc2	2400002D05Rik|4933431K03Rik	leucine rich repeat containing 2	protein-coding	0.010000	0.522388	
mm_86661.1	chr10	17796207	17796407	+	1	NA	NA	NA	88	NM_138628	378431	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	0.010000	0.552239	
mm_31197.1	chr4	43663954	43664154	+	1	NA	NA	NA	4805	NM_175517	242408	Mm.440423	NM_175517	ENSMUSG00000043633	Fam221b	4930412F15Rik	family with sequence similarity 221, member B	protein-coding	0.080000	0.577114	
mm_142439.1	chr17	45571431	45571631	-	1	NA	NA	NA	1730	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.035000	0.517413	
mm_147051.1	chr18	34931907	34932107	-	1	NA	NA	NA	-4	NM_144866	225363	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.090000	0.666667	
mm_93830.1	chr10	121585806	121586006	-	1	NA	NA	NA	888	NM_019786	56480	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.015000	0.393035	-35(CTTTTTATATTG,+,0.00)
mm_117690.1	chr13	94285797	94285997	-	1	NA	NA	NA	-66	NM_001346609	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.055000	0.611940	
mm_65823.1	chr7	29176028	29176228	-	1	NA	NA	NA	4545	NM_026545	57296	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	0.005000	0.532338	
mm_156471.1	chrX	143518632	143518832	+	1	NA	NA	NA	141	NM_001195048	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding	0.035000	0.597015	
mm_106494.1	chr11	120348084	120348284	-	1	NA	NA	NA	311	NM_001313923	11465	Mm.196173	NM_009609	ENSMUSG00000062825	Actg1	AL023024|Actg|Actl|E51	actin, gamma, cytoplasmic 1	protein-coding	0.120000	0.706468	
mm_63492.1	chr7	127769761	127769961	+	1	NA	NA	NA	46	NM_198424	269999	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0.070000	0.666667	
mm_89087.1	chr10	83722814	83723014	+	1	NA	NA	NA	49	NM_001145198	69784	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	0.120000	0.731343	
mm_56887.1	chr6	119032620	119032820	-	1	NA	NA	NA	75775	NM_001159534	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.000000	0.373134	
mm_136310.1	chr16	91685551	91685751	-	1	NA	NA	NA	3077	NM_021720	60364	Mm.328698	NM_021720	ENSMUSG00000022960	Donson	1110025J21Rik|AI845729|ORF60	downstream neighbor of SON	protein-coding	0.015000	0.407960	
mm_80212.1	chr9	72461696	72461896	+	1	NA	NA	NA	23267	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.015000	0.353234	
mm_148944.1	chr19	7217765	7217965	+	1	NA	NA	NA	-249	NM_007750	12868	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0.010000	0.442786	
mm_137880.1	chr17	31564856	31565056	+	1	NA	NA	NA	183	NM_016670	18771	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.150000	0.746269	
mm_61119.1	chr7	54877099	54877299	+	1	NA	NA	NA	41954	NM_178705	233271	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	0.000000	0.303483	
mm_17153.1	chr2	25214531	25214731	-	1	NA	NA	NA	-1	NM_028961	74472	Mm.176944	NM_028961	ENSMUSG00000036770	Stpg3	4933433C11Rik	sperm tail PG rich repeat containing 3	protein-coding	0.005000	0.532338	
mm_104552.1	chr11	96788898	96789098	-	1	NA	NA	NA	-138	NM_007622	12412	Mm.29055	NM_007622	ENSMUSG00000018666	Cbx1	Cbx|Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1	chromobox 1	protein-coding	0.050000	0.447761	
mm_63490.1	chr7	127767411	127767611	+	1	NA	NA	NA	-2304	NM_198424	269999	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0.040000	0.621891	
mm_128174.1	chr15	34443118	34443318	-	1	NA	NA	NA	7	NM_009083	19946	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	0.075000	0.606965	
mm_53655.1	chr6	141274883	141275083	+	1	NA	NA	NA	25714	NM_018779	54611	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0.000000	0.457711	
mm_55821.1	chr6	83054294	83054494	-	1	NA	NA	NA	-127	NR_125891	11993	Mm.386752	NM_007517	ENSMUSG00000068328	Aup1	AA589454	ancient ubiquitous protein 1	protein-coding	0.070000	0.656716	
mm_161789.1	chr17	46028294	46028494	-	1	NA	NA	NA	-3231	NM_001110268	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.020000	0.537313	
mm_41333.1	chr5	90495862	90496062	+	1	NA	NA	NA	5248	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.015000	0.407960	
mm_147995.1	chr18	67675663	67675863	-	1	NA	NA	NA	34164	NM_134138	107047	Mm.150701	NM_134138	ENSMUSG00000024537	Psmg2	1700017I17Rik|AW545363|Clast3|Tnfsf5ip1	proteasome (prosome, macropain) assembly chaperone 2	protein-coding	0.010000	0.437811	
mm_103614.1	chr11	78550612	78550812	-	1	NA	NA	NA	23	NM_133706	69071	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0.080000	0.641791	
mm_50326.1	chr6	48395602	48395802	+	1	NA	NA	NA	116	NM_001347153	77827	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	0.105000	0.686567	
mm_144244.1	chr18	10726158	10726358	+	1	NA	NA	NA	633	NM_144860	225164	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0.160000	0.771144	
mm_145164.1	chr18	46740909	46741109	+	1	NA	NA	NA	570	NM_026217	67526	Mm.9852	NM_026217	ENSMUSG00000032905	Atg12	4931423H11Rik|A330058M13Rik|Apg12l|Atg12l	autophagy related 12	protein-coding	0.025000	0.452736	
mm_125152.1	chr15	30646846	30647046	+	1	NA	NA	NA	-392180	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.160000	0.805970	
mm_82732.1	chr9	25185905	25186105	-	1	NA	NA	NA	-34224	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.030000	0.467662	
mm_46939.1	chr5	114813854	114814054	-	1	NA	NA	NA	22	NR_027818	66236	Mm.268546	NR_027817	ENSMUSG00000072694	1500011B03Rik	AI415201|AV141149|AW556386	RIKEN cDNA 1500011B03 gene	ncRNA	0.105000	0.686567	
mm_99161.1	chr11	100622846	100623046	+	1	NA	NA	NA	-9	NM_028024	71966	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0.080000	0.701493	
mm_144155.1	chr18	5593476	5593676	+	1	NA	NA	NA	-1139	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	0.040000	0.507463	
mm_156192.1	chrX	134059075	134059275	+	1	NA	NA	NA	-1	NM_001290398	108062	Mm.67938	NM_133196	ENSMUSG00000031256	Cstf2	C630034J23Rik|Cstf64|mir-3112	cleavage stimulation factor, 3' pre-RNA subunit 2	protein-coding	0.140000	0.771144	
mm_17107.1	chr2	24049295	24049495	-	1	NA	NA	NA	-16	NM_080462	140483	Mm.33120	NM_080462	ENSMUSG00000026986	Hnmt	1500031F01Rik|AI788969	histamine N-methyltransferase	protein-coding	0.015000	0.373134	
mm_74082.1	chr8	122523554	122523754	+	1	NA	NA	NA	27675	NM_001037298	234839	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	0.005000	0.547264	
mm_24368.1	chr3	90104036	90104236	+	1	NA	NA	NA	4	NM_029937	77595	Mm.159949	NM_029937	ENSMUSG00000027939	Nup210l	4930548O11Rik|R26-EGFP|Tg(Gt(ROSA)26Sor-EGFP)130910Eps	nucleoporin 210-like	protein-coding	0.045000	0.582090	
mm_151100.1	chr19	47855116	47855316	+	1	NA	NA	NA	243	NM_010362	14873	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0.085000	0.681592	
mm_90612.1	chr10	128361297	128361497	+	1	NA	NA	NA	8640	NM_001081040	210582	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.005000	0.542289	
mm_117361.1	chr13	70637697	70637897	-	1	NA	NA	NA	-163	NM_144837	218333	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0.100000	0.716418	
mm_15503.1	chr2	158028458	158028658	+	1	NA	NA	NA	61	NM_001291135	70470	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	0.115000	0.636816	
mm_88436.1	chr10	77530535	77530735	+	1	NA	NA	NA	287	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.015000	0.537313	
mm_135876.1	chr16	62881336	62881536	-	1	NA	NA	NA	27129	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0.010000	0.338308	
mm_20011.1	chr2	119229763	119229963	-	1	NA	NA	NA	2	NM_028104	72112	Mm.46317	NM_028104	ENSMUSG00000027317	Ppp1r14d	2010107K19Rik|GBPI-1|Ppp1r14	protein phosphatase 1, regulatory (inhibitor) subunit 14D	protein-coding	0.000000	0.542289	
mm_30707.1	chr4	12089284	12089484	+	1	NA	NA	NA	14	NM_198957	77604	Mm.474129	NM_198957	ENSMUSG00000052137	Rbm12b2	AV299215|C430048L16Rik|Rbm12bb	RNA binding motif protein 12 B2	protein-coding	0.100000	0.636816	
mm_169572.1	chr1	52119347	52119547	+	1	NA	NA	NA	9	NM_001205314	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.080000	0.661692	
mm_7737.1	chr1	130876059	130876259	-	1	NA	NA	NA	10382	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.005000	0.522388	
mm_134415.1	chr16	17722388	17722588	-	1	NA	NA	NA	412	NM_001285886	94112	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.045000	0.462687	
mm_142222.1	chr17	37185446	37185646	-	1	NA	NA	NA	-8346	NM_023137	24108	Mm.140210	NM_023137	ENSMUSG00000035186	Ubd	FAT10	ubiquitin D	protein-coding	0.015000	0.512438	
mm_77717.1	chr8	126593909	126594109	-	1	NA	NA	NA	-573	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.120000	0.731343	
mm_46869.1	chr5	113830364	113830564	-	1	NA	NA	NA	37	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.035000	0.606965	
mm_21336.1	chr2	157105571	157105771	-	1	NA	NA	NA	18616	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.005000	0.383085	
mm_47362.1	chr5	122899011	122899211	-	1	NA	NA	NA	1239	NM_013910	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.010000	0.407960	
mm_144632.1	chr18	32939326	32939526	+	1	NA	NA	NA	385	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.125000	0.661692	
mm_59145.1	chr7	24349095	24349295	+	1	NA	NA	NA	-29	NM_029806	76942	Mm.261468	NM_029806	ENSMUSG00000030484	Lypd5	2210003I03Rik	Ly6/Plaur domain containing 5	protein-coding	0.015000	0.641791	
mm_16541.1	chr2	181656790	181656990	+	1	NA	NA	NA	14750	NM_009236	20672	Mm.264904	NM_009236	ENSMUSG00000046470	Sox18	AI385749|Ra|Ragl	SRY (sex determining region Y)-box 18	protein-coding	0.005000	0.567164	
mm_91500.1	chr10	37135997	37136197	-	1	NA	NA	NA	2829	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.090000	0.621891	
mm_100116.1	chr11	115877423	115877623	+	1	NA	NA	NA	-22616	NM_183259	66528	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	0.010000	0.601990	
mm_54089.1	chr6	15845983	15846183	-	1	NA	NA	NA	125422	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.005000	0.497512	
mm_32742.1	chr4	116637652	116637852	+	1	NA	NA	NA	-9801	NM_016777	50927	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.010000	0.477612	-16(GACTCTAAATGG,-,0.00)
mm_152518.1	chr19	11283783	11283983	-	1	NA	NA	NA	-70	NM_183190	269063	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	0.005000	0.393035	27(TGGTCTAAATGG,-,0.00)
mm_1990.1	chr1	87125835	87126035	+	1	NA	NA	NA	927	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.035000	0.557214	
mm_87957.1	chr10	63243716	63243916	+	1	NA	NA	NA	19	NM_026101	67345	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0.080000	0.726368	
mm_112759.1	chr13	19346988	19347188	+	1	NA	NA	NA	48725	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.333333	
mm_79553.1	chr9	57997947	57998147	+	1	NA	NA	NA	23	NM_001346787	13070	Mm.302865	NM_019779	ENSMUSG00000032323	Cyp11a1	Cyp11a|Cypxia1|D9Ertd411e|P450scc|Scc|cscc	cytochrome P450, family 11, subfamily a, polypeptide 1	protein-coding	0.045000	0.616915	
mm_88833.1	chr10	80806735	80806935	+	1	NA	NA	NA	1587	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.045000	0.631841	
mm_31006.1	chr4	40184870	40185070	+	1	NA	NA	NA	41705	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.035000	0.497512	
mm_147024.1	chr18	34651599	34651799	-	1	NA	NA	NA	37	NM_178347	52563	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	0.080000	0.572139	
mm_104567.1	chr11	96916390	96916590	-	1	NA	NA	NA	24	NM_001308183	80280	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0.075000	0.611940	
mm_110402.1	chr12	44268901	44269101	-	1	NA	NA	NA	-153	NM_026164	67452	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	0.045000	0.552239	
mm_34019.1	chr4	138017230	138017430	+	1	NA	NA	NA	23874	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.030000	0.582090	
mm_85061.1	chr9	90243027	90243227	-	1	NA	NA	NA	27642	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.015000	0.542289	
mm_153699.1	chr19	44397449	44397649	-	1	NA	NA	NA	10160	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.000000	0.467662	
mm_94983.1	chr11	31831695	31831895	+	1	NA	NA	NA	-7248	NR_102312	414116	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.015000	0.467662	
mm_130976.1	chr15	103340014	103340214	-	1	NA	NA	NA	-28	NM_013866	29813	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.090000	0.731343	
mm_147889.1	chr18	64999276	64999476	-	1	NA	NA	NA	-24151	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.010000	0.542289	
mm_78362.1	chr9	26733751	26733951	+	1	NA	NA	NA	43	NM_001310766	76898	Mm.218788	NM_029792	ENSMUSG00000045994	B3gat1	0710007K08Rik|AI846286|GlcAT-P|Glcatp|Hnk1	beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	protein-coding	0.185000	0.825871	
mm_59503.1	chr7	27556583	27556783	+	1	NA	NA	NA	3393	NM_175107	66367	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	0.020000	0.487562	
mm_73804.1	chr8	117307634	117307834	+	1	NA	NA	NA	-41436	NM_028941	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.010000	0.487562	
mm_44911.1	chr5	35663683	35663883	-	1	NA	NA	NA	15997	NM_001042615	78558	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.000000	0.517413	
mm_73325.1	chr8	105276334	105276534	+	1	NA	NA	NA	-13	NM_030152	78688	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0.075000	0.661692	
mm_160137.1	chr7	30821571	30821771	-	1	NA	NA	NA	-23	NM_001168509	233079	Mm.97338	NM_146187	ENSMUSG00000051314	Ffar2	GPCR43|Gpr43	free fatty acid receptor 2	protein-coding	0.020000	0.517413	
mm_33971.1	chr4	137614441	137614641	+	1	NA	NA	NA	20352	NM_130879	170707	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	0.000000	0.462687	33(GTCTTTTTAAAG,-,0.00),35(CTTTTTAAAGAT,+,0.00)
mm_63389.1	chr7	127232959	127233159	+	1	NA	NA	NA	71	NR_030674	100043580	Mm.482209	NR_030674	ENSMUSG00000000486	Gm4532	-	predicted gene 4532	ncRNA	0.105000	0.721393	
mm_34353.1	chr4	144613547	144613747	+	1	NA	NA	NA	-60	NM_001081248	435815	Mm.439623	NM_001081248	ENSMUSG00000070609	Gm13177	OTTMUSG00000010747	predicted gene 13177	protein-coding	0.005000	0.517413	
mm_54397.1	chr6	31480028	31480228	-	1	NA	NA	NA	81300	NM_013791	27418	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0.015000	0.477612	
mm_46958.1	chr5	115103450	115103650	-	1	NA	NA	NA	4412	NM_001271591	100502825	Mm.361657	NM_001271590		Rpl37rt	Gm13826|OTTMUSG00000014624	ribosomal protein L37, retrotransposed	protein-coding	0.075000	0.532338	
mm_36088.1	chr4	58444018	58444218	-	1	NA	NA	NA	-3020	NR_037278	100526502		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0.000000	0.492537	
mm_90319.1	chr10	127064125	127064325	+	1	NA	NA	NA	622	NM_009870	12567	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	0.050000	0.552239	
mm_121779.1	chr14	19890499	19890699	-	1	NA	NA	NA	51674	NR_105025	52512	Mm.483998	NR_105025		D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.005000	0.402985	
mm_104349.1	chr11	94296873	94297073	-	1	NA	NA	NA	24938	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.050000	0.472637	
mm_21414.1	chr2	158124064	158124264	-	1	NA	NA	NA	22228	NM_009373	21817	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.045000	0.587065	
mm_159590.1	chr4	123323487	123323687	-	1	NA	NA	NA	92	NM_022033	64059	Mm.270287	NM_022033	ENSMUSG00000076436	Oxct2a	Oxct|Oxct2|Scot|Scot-t1	3-oxoacid CoA transferase 2A	protein-coding	0.080000	0.656716	
mm_99399.1	chr11	102189681	102189881	+	1	NA	NA	NA	82	NM_175935	68401	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	0.080000	0.671642	34(GGCTAGAAAGGG,-,0.00)
mm_158770.1	chrX	166618563	166618763	-	1	NA	NA	NA	-32947	NM_019397	54156	Mm.37707	NM_019397	ENSMUSG00000000402	Egfl6	Maeg	EGF-like-domain, multiple 6	protein-coding	0.015000	0.472637	-79(TTCCATAAAAGA,-,0.00)
mm_122359.1	chr14	39223238	39223438	-	1	NA	NA	NA	-249091	NR_131973	432842	Mm.352566	NR_131973		LOC432842	-	uncharacterized LOC432842	ncRNA	0.000000	0.248756	
mm_34616.1	chr4	150406530	150406730	+	1	NA	NA	NA	124714	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.050000	0.537313	
mm_14424.1	chr2	130503884	130504084	+	1	NA	NA	NA	53706	NM_001163688	19262	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	0.005000	0.283582	
mm_40449.1	chr5	53596025	53596225	+	1	NA	NA	NA	5639	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.010000	0.547264	25(GTCTTTAAAAAA,-,0.00)
mm_12296.1	chr2	69075429	69075629	+	1	NA	NA	NA	-60271	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.015000	0.373134	
mm_66357.1	chr7	43527819	43528019	-	1	NA	NA	NA	5252	NM_001111058	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.000000	0.437811	
mm_134213.1	chr16	11200282	11200482	-	1	NA	NA	NA	2910	NM_025546	66409	Mm.28291	NM_025546	ENSMUSG00000005846	Rsl1d1	2410005K20Rik|C76439|pBK1	ribosomal L1 domain containing 1	protein-coding	0.005000	0.407960	
mm_144259.1	chr18	11052369	11052569	+	1	NA	NA	NA	-41	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.045000	0.611940	
mm_166133.1	chr4	155625135	155625335	+	1	NA	NA	NA	366	NM_007661	12537	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	0.050000	0.527363	
mm_66444.1	chr7	44854438	44854638	-	1	NA	NA	NA	-2608	NM_021549	59047	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0.075000	0.626866	
mm_31515.1	chr4	53832476	53832676	+	1	NA	NA	NA	6531	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.005000	0.532338	
mm_121564.1	chr14	122534236	122534436	+	1	NA	NA	NA	8	NM_144844	110821	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.090000	0.706468	
mm_162637.1	chr1	191280728	191280928	-	1	NA	NA	NA	37290	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.020000	0.597015	
mm_99551.1	chr11	103445448	103445648	+	1	NA	NA	NA	-32884	NM_183034	353047	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.005000	0.373134	
mm_128582.1	chr15	58034194	58034394	-	1	NA	NA	NA	0	NM_029418	75758	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.120000	0.661692	
mm_84821.1	chr9	77707759	77707959	-	1	NA	NA	NA	-46676	NM_010295	14629	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.020000	0.522388	
mm_32485.1	chr4	107890184	107890384	+	1	NA	NA	NA	385	NM_028754	74098	Mm.274853	NM_028754	ENSMUSG00000028608	0610037L13Rik	1110008H16Rik	RIKEN cDNA 0610037L13 gene	protein-coding	0.030000	0.537313	
mm_63468.1	chr7	127585220	127585420	+	1	NA	NA	NA	3275	NM_001033040	233899	Mm.25220	NM_001033040	ENSMUSG00000057176	Ccdc189	Gm166	coiled-coil domain containing 189	protein-coding	0.025000	0.547264	-91(CTCTTTAAAGAG,+,0.00),-91(CTCTTTAAAGAG,-,0.00)
mm_990.1	chr1	58652507	58652707	+	1	NA	NA	NA	-34	NR_045007	100504501	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo	0.040000	0.601990	
mm_161522.1	chr15	100353088	100353288	+	1	NA	NA	NA	-12	NM_001024672	554292	Mm.268451	NM_001024672	ENSMUSG00000093789	Methig1	Mettl7a2-Higd1c|Mettl7a2Higd1c|Mettl7a2higd1c|UbiE-YGHL1	methyltransferase hypoxia inducible domain containing 1	protein-coding	0.030000	0.542289	
mm_104232.1	chr11	88643450	88643650	-	1	NA	NA	NA	24299	NR_131025	68397	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	0.000000	0.328358	
mm_36795.1	chr4	103114470	103114670	-	1	NA	NA	NA	180	NM_001286222	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.100000	0.711443	
mm_66349.1	chr7	43518467	43518667	-	1	NA	NA	NA	-12629	NM_028737	74054	Mm.195732	NM_028737	ENSMUSG00000013353	4931406B18Rik	4930538L19Rik	RIKEN cDNA 4931406B18 gene	protein-coding	0.050000	0.587065	
mm_15476.1	chr2	157560570	157560770	+	1	NA	NA	NA	592	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.015000	0.383085	-7(TCTTTTAAATAC,+,0.00)
mm_122280.1	chr14	34502448	34502648	-	1	NA	NA	NA	-2	NM_009758	12166	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK3|AU045487|BMPR-IA|Bmpr	bone morphogenetic protein receptor, type 1A	protein-coding	0.165000	0.796020	
mm_137282.1	chr17	24728154	24728354	+	1	NA	NA	NA	425	NM_001163945	66211	Mm.46198	NM_025425	ENSMUSG00000002500	Rpl3l	1110057H16Rik	ribosomal protein L3-like	protein-coding	0.035000	0.572139	
mm_102795.1	chr11	68838649	68838849	-	1	NA	NA	NA	14382	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.010000	0.373134	-85(CTTTTTATAGAT,+,0.00),15(GTTTTTAAAAGG,-,0.00)
mm_130971.1	chr15	103323431	103323631	-	1	NA	NA	NA	-13093	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.115000	0.805970	
mm_18707.1	chr2	71872971	71873171	-	1	NA	NA	NA	-153	NM_172665	228026	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.070000	0.621891	
mm_5369.1	chr1	28895494	28895694	-	1	NA	NA	NA	-115342	NM_001013750	210962	Mm.214178	NM_001013750	ENSMUSG00000048411	Gm597	-	predicted gene 597	protein-coding	0.000000	0.373134	
mm_57077.1	chr6	122581341	122581541	-	1	NA	NA	NA	21003	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.035000	0.512438	
mm_18689.1	chr2	71529562	71529762	-	1	NA	NA	NA	217	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.120000	0.691542	
mm_13528.1	chr2	110134958	110135158	+	1	NA	NA	NA	-84579	NR_040508	75517	Mm.363927	NR_040508	ENSMUSG00000086186	Ccdc34os	1700024P03Rik	coiled-coil domain containing 34, opposite strand	ncRNA	0.005000	0.487562	-53(CTCCTTTAAGGG,-,0.00),-52(TCCTTTAAGGGC,+,0.00),-51(CCTTTAAGGGCA,+,0.00),-32(CCCTATAAAAGC,+,0.00),-32(CCCTATAAAAGC,-,0.00),-19(GCTCATTAAAGG,-,0.00)
mm_87496.1	chr10	51526245	51526445	+	1	NA	NA	NA	35447	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.015000	0.502488	
mm_7906.1	chr1	133661293	133661493	-	1	NA	NA	NA	6	NM_001276767	70579	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	0.065000	0.572139	-19(CAGCCTTAAAGG,-,0.00),-18(AGCCTTAAAGGC,-,0.00),-17(GCCTTAAAGGCG,+,0.00)
mm_54715.1	chr6	39810793	39810993	-	1	NA	NA	NA	43	NM_010270	14548	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.100000	0.686567	
mm_152523.1	chr19	11314329	11314529	-	1	NA	NA	NA	20266	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.005000	0.417910	
mm_145063.1	chr18	40523002	40523202	+	1	NA	NA	NA	264741	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.000000	0.442786	
mm_25605.1	chr3	117575175	117575375	+	1	NA	NA	NA	48	NM_001305451	75769	Mm.72187	NM_029425	ENSMUSG00000033342	Plppr5	4833424O15Rik|Lppr5|PRG-5|Pap2d	phospholipid phosphatase related 5	protein-coding	0.075000	0.631841	
mm_6517.1	chr1	74395485	74395685	-	1	NA	NA	NA	1275	NR_029743	387219		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.040000	0.601990	
mm_78120.1	chr9	20643521	20643721	+	1	NA	NA	NA	303	NM_025401	66177	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.035000	0.502488	46(GGCCCTAAAAGC,-,0.00)
mm_77465.1	chr8	122424923	122425123	-	1	NA	NA	NA	2938	NM_145834	234836	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.030000	0.621891	
mm_128093.1	chr15	27788449	27788649	-	1	NA	NA	NA	-107007	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.010000	0.532338	
mm_118732.1	chr14	22252858	22253058	+	1	NA	NA	NA	233246	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.000000	0.393035	
mm_119810.1	chr14	54222682	54222882	+	1	NA	NA	NA	31147	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.477612	
mm_135950.1	chr16	74411720	74411920	-	1	NA	NA	NA	-908	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.055000	0.666667	
mm_138416.1	chr17	35069279	35069479	+	1	NA	NA	NA	2054	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.035000	0.562189	
mm_13516.1	chr2	109917583	109917783	+	1	NA	NA	NA	36	NM_172671	107515	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	0.090000	0.666667	
mm_89814.1	chr10	103369279	103369479	+	1	NA	NA	NA	1571	NM_175328	103098	Mm.458408	NM_175328	ENSMUSG00000019894	Slc6a15	AA536730|AI326450|AI326451|v7-3	solute carrier family 6 (neurotransmitter transporter), member 15	protein-coding	0.005000	0.452736	
mm_136899.1	chr17	13015034	13015234	+	1	NA	NA	NA	7295	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.030000	0.467662	-58(CAGTATAAAAAC,-,0.00)
mm_80334.1	chr9	75051987	75052187	+	1	NA	NA	NA	14355	NM_021548	59046	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	0.015000	0.388060	
mm_79153.1	chr9	47745305	47745505	+	1	NA	NA	NA	72803	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.010000	0.318408	
mm_83104.1	chr9	40345119	40345319	-	1	NA	NA	NA	11747	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.010000	0.497512	
mm_72917.1	chr8	91073884	91074084	+	1	NA	NA	NA	3927	NM_001282000	19651	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	retinoblastoma-like 2	protein-coding	0.015000	0.477612	
mm_150862.1	chr19	45017357	45017557	+	1	NA	NA	NA	-678	NM_001130526	226154	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.040000	0.656716	
mm_134054.1	chr16	5949840	5950040	-	1	NA	NA	NA	-25647	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA	0.010000	0.457711	
mm_150806.1	chr19	44333760	44333960	+	1	NA	NA	NA	534	NM_183216	329065	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0.005000	0.492537	
mm_169524.1	chr14	90085164	90085364	-	1	NA	NA	NA	-41627	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA	0.025000	0.462687	
mm_135899.1	chr16	66744495	66744695	-	1	NA	NA	NA	87477	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0.015000	0.383085	
mm_2593.1	chr1	119453857	119454057	+	1	NA	NA	NA	-31709	NM_008381	16324	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	0.010000	0.512438	
mm_39105.1	chr4	154921672	154921872	-	1	NA	NA	NA	6305	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.000000	0.512438	
mm_10097.1	chr2	3439220	3439420	+	1	NA	NA	NA	15189	NM_001302684	227525	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0.000000	0.452736	
mm_164711.1	chr17	53565801	53566001	+	1	NA	NA	NA	-1070	NM_020005	18519	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.005000	0.407960	-78(CTTTATATACAA,+,0.00)
mm_9461.1	chr1	172894912	172895112	-	1	NA	NA	NA	42	NM_011318	20219	Mm.330510	NM_011318	ENSMUSG00000026542	Apcs	Sap	serum amyloid P-component	protein-coding	0.005000	0.417910	
mm_113106.1	chr13	24414410	24414610	+	1	NA	NA	NA	-612	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.000000	0.512438	
mm_103279.1	chr11	72206904	72207104	-	1	NA	NA	NA	-550	NM_026559	52700	Mm.27670	NM_026559	ENSMUSG00000020803	Txndc17	4831443O22Rik|D11Ertd672e|TRP14|Txnl5	thioredoxin domain containing 17	protein-coding	0.065000	0.606965	
mm_117258.1	chr13	64368088	64368288	-	1	NA	NA	NA	2332	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.035000	0.487562	
mm_17272.1	chr2	26091819	26092019	-	1	NA	NA	NA	477	NM_001037098	67991	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.065000	0.696517	
mm_139609.1	chr17	57316308	57316508	+	1	NA	NA	NA	37308	NM_001163815	22324	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.000000	0.402985	
mm_113346.1	chr13	31806567	31806767	+	1	NA	NA	NA	21	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.085000	0.616915	
mm_104407.1	chr11	94570446	94570646	-	1	NA	NA	NA	5472	NM_007689	12643	Mm.440523	NM_007689	ENSMUSG00000039084	Chad	SLRR4A	chondroadherin	protein-coding	0.005000	0.592040	-34(GTTTATATAGGC,+,0.00)
mm_157954.1	chrX	87762605	87762805	-	1	NA	NA	NA	352918	NM_001160403	331461	Mm.121680	NM_001160403	ENSMUSG00000052372	Il1rapl1	6330532G10Rik|C030039N24|IL1R8|IL1RAPL|MRX34|OPHN4|TIGIRR-2	interleukin 1 receptor accessory protein-like 1	protein-coding	0.000000	0.283582	
mm_30067.1	chr3	137954632	137954832	-	1	NA	NA	NA	26817	NM_011932	26377	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.050000	0.567164	
mm_6521.1	chr1	74505597	74505797	-	1	NA	NA	NA	124	NM_001310662	319651	Mm.66568	NM_176972	ENSMUSG00000033364	Usp37	4932415L06Rik|C330008N13Rik	ubiquitin specific peptidase 37	protein-coding	0.065000	0.641791	
mm_156201.1	chrX	134425129	134425329	+	1	NA	NA	NA	20449	NM_010078	13497	Mm.121662	NM_010078	ENSMUSG00000000223	Drp2	AW495265|DRP-2	dystrophin related protein 2	protein-coding	0.010000	0.318408	
mm_121595.1	chr14	7994043	7994243	-	1	NA	NA	NA	39	NM_007870	13421	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.015000	0.447761	-90(TGGCTTTTAAGG,-,0.00),-89(GGCTTTTAAGGA,-,0.00),-88(GCTTTTAAGGAG,+,0.00)
mm_158780.1	chrX	167207120	167207320	-	1	NA	NA	NA	1998	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.000000	0.373134	
mm_167741.1	chr9	107614646	107614846	-	1	NA	NA	NA	-5505	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.025000	0.587065	
mm_79651.1	chr9	59617160	59617360	+	1	NA	NA	NA	-24	NR_038075	67287	Mm.439943	NM_029922	ENSMUSG00000025237	Parp6	1700119G14Rik|2310028P13Rik|3110038K10Rik|ARTD17|C030013N01Rik|PARP-6	poly (ADP-ribose) polymerase family, member 6	protein-coding	0.135000	0.751244	
mm_14529.1	chr2	132780618	132780818	+	1	NA	NA	NA	-560	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.010000	0.378109	-23(CTATTTAAAAGC,-,0.00)
mm_155753.1	chrX	96167303	96167503	+	1	NA	NA	NA	71358	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.000000	0.487562	
mm_59626.1	chr7	28154625	28154825	+	1	NA	NA	NA	-15023	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.020000	0.567164	
mm_18139.1	chr2	45037006	45037206	-	1	NA	NA	NA	-13929	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.015000	0.477612	
mm_105370.1	chr11	103208449	103208649	-	1	NA	NA	NA	-1	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.020000	0.597015	
mm_102920.1	chr11	69600136	69600336	-	1	NA	NA	NA	5724	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.015000	0.597015	
mm_34839.1	chr4	155396962	155397162	+	1	NA	NA	NA	1007	NM_008072	14403	Mm.388925	NM_008072	ENSMUSG00000029054	Gabrd	AI853201	gamma-aminobutyric acid (GABA) A receptor, subunit delta	protein-coding	0.015000	0.512438	2(CCTCTAAAGGAC,+,0.00)
mm_44339.1	chr5	17397806	17398006	-	1	NA	NA	NA	-78216	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	0.000000	0.343284	
mm_137714.1	chr17	29099710	29099910	+	1	NA	NA	NA	6041	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.005000	0.532338	
mm_161120.1	chr12	108422930	108423130	+	1	NA	NA	NA	214	NM_001043335	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.155000	0.815920	
mm_22452.1	chr3	3187831	3188031	+	1	NA	NA	NA	-320099	NM_013920	30942	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.000000	0.393035	
mm_150380.1	chr19	36235377	36235577	+	1	NA	NA	NA	-115633	NM_013468	107765	Mm.10279	NM_013468	ENSMUSG00000024803	Ankrd1	Alrp|CARP|Crap|MARP1	ankyrin repeat domain 1 (cardiac muscle)	protein-coding	0.015000	0.497512	-34(CCATATAAAAAC,-,0.00)
mm_25316.1	chr3	106482464	106482664	+	1	NA	NA	NA	114	NM_001278941	72121	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.070000	0.711443	
mm_27225.1	chr3	36222186	36222386	-	1	NA	NA	NA	-11	NM_198192	229214	Mm.330975	NM_198192	ENSMUSG00000058400	Qrfpr	AQ27|Gpr103|SP9155	pyroglutamylated RFamide peptide receptor	protein-coding	0.055000	0.611940	
mm_69803.1	chr7	141183325	141183525	-	1	NA	NA	NA	-10574	NM_001172100	107702	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.005000	0.447761	
mm_95960.1	chr11	58867117	58867317	+	1	NA	NA	NA	-23	NM_172403	69944	Mm.32118	NM_172403	ENSMUSG00000020491	2810021J22Rik	AI449137	RIKEN cDNA 2810021J22 gene	protein-coding	0.065000	0.597015	
mm_18514.1	chr2	62627724	62627924	-	1	NA	NA	NA	18431	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.015000	0.283582	
mm_18376.1	chr2	59953664	59953864	-	1	NA	NA	NA	-71158	NM_028118	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.030000	0.393035	88(CCTTTTATCCGC,+,0.00)
mm_129112.1	chr15	76070831	76071031	-	1	NA	NA	NA	-1147	NM_001310542	105782	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	0.035000	0.562189	
mm_4414.1	chr1	172499800	172500000	+	1	NA	NA	NA	-346	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.025000	0.477612	
mm_156288.1	chrX	136837350	136837550	+	1	NA	NA	NA	14704	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.000000	0.313433	
mm_124834.1	chr15	9196946	9197146	+	1	NA	NA	NA	-41621	NM_001285980	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.000000	0.268657	
mm_130906.1	chr15	102510683	102510883	-	1	NA	NA	NA	6221	NM_001163643	26404	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0.080000	0.701493	
mm_78007.1	chr9	12839033	12839233	+	1	NA	NA	NA	266722	NR_040755	78219	Mm.414868	NR_040755	ENSMUSG00000111830	4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA	0.000000	0.363184	
mm_22556.1	chr3	9801809	9802009	+	1	NA	NA	NA	31770	NM_053182	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.005000	0.398010	
mm_134506.1	chr16	19063441	19063641	-	1	NA	NA	NA	186791	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.000000	0.462687	
mm_156969.1	chrX	169997205	169997405	+	1	NA	NA	NA	-18388	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.080000	0.656716	
mm_54128.1	chr6	18514731	18514931	-	1	NA	NA	NA	-6	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding	0.145000	0.746269	
mm_153487.1	chr19	41308383	41308583	-	1	NA	NA	NA	-44479	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.025000	0.492537	
mm_169705.1	chr15	75135046	75135246	-	1	NA	NA	NA	-20115	NM_001310438	546644		NM_008531	ENSMUSG00000022582	Ly6g	Gr-1|Gr1|Ly-6G	lymphocyte antigen 6 complex, locus G	protein-coding	0.005000	0.507463	
mm_68205.1	chr7	104395117	104395317	-	1	NA	NA	NA	-36571	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.000000	0.308458	79(CCTTTTATATTT,+,0.00)
mm_1883.1	chr1	85665197	85665397	+	1	NA	NA	NA	15309	NM_001313714	20684	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.015000	0.437811	61(GACTCTATAAAC,-,0.00)
mm_54784.1	chr6	41544284	41544484	-	1	NA	NA	NA	22608	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.447761	
mm_170060.1	chr17	30624280	30624480	+	1	NA	NA	NA	2525	NR_045287	67522	Mm.254797	NR_045287	ENSMUSG00000099474	1700097N02Rik	-	RIKEN cDNA 1700097N02 gene	ncRNA	0.055000	0.616915	
mm_43000.1	chr5	123428952	123429152	+	1	NA	NA	NA	34254	NM_177582	208104	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.020000	0.492537	
mm_25141.1	chr3	102520279	102520479	+	1	NA	NA	NA	50460	NM_013609	18049	Mm.1259	NM_013609	ENSMUSG00000027859	Ngf	Ngfb	nerve growth factor	protein-coding	0.025000	0.567164	
mm_16794.1	chr2	10094726	10094926	-	1	NA	NA	NA	14214	NM_025280	16588	Mm.35498	NM_025280	ENSMUSG00000037262	Kin	Kin17	Kin17 DNA and RNA binding protein	protein-coding	0.030000	0.457711	
mm_91746.1	chr10	49534001	49534201	-	1	NA	NA	NA	254653	NM_010349	14806	Mm.332838	NM_010349	ENSMUSG00000056073	Grik2	AW124492|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.005000	0.303483	
mm_100030.1	chr11	114929779	114929979	+	1	NA	NA	NA	4507	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.005000	0.467662	
mm_70403.1	chr8	11325389	11325589	+	1	NA	NA	NA	-12663	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.020000	0.482587	
mm_47531.1	chr5	124189623	124189823	-	1	NA	NA	NA	-2541	NM_001289472	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.010000	0.562189	
mm_51711.1	chr6	86748846	86749046	+	1	NA	NA	NA	-15568	NM_011818	23885	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	0.030000	0.522388	
mm_115443.1	chr13	117724800	117725000	+	1	NA	NA	NA	-4889	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA	0.000000	0.308458	
mm_52724.1	chr6	120039814	120040014	+	1	NA	NA	NA	-1259	NM_001185021	232341	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0.075000	0.527363	
mm_31128.1	chr4	43058894	43059094	+	1	NA	NA	NA	41	NM_001310758	22249	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	0.095000	0.681592	
mm_144182.1	chr18	6788809	6789009	+	1	NA	NA	NA	23742	NM_001278447	19330	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.015000	0.378109	
mm_123872.1	chr14	72589812	72590012	-	1	NA	NA	NA	120091	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.030000	0.517413	
mm_68968.1	chr7	126584522	126584722	-	1	NA	NA	NA	-386	NM_138310	171504	Mm.170665	NM_138310	ENSMUSG00000042759	Apobr	Apob-48r|Apob48r	apolipoprotein B receptor	protein-coding	0.020000	0.532338	
mm_87149.1	chr10	34898604	34898804	+	1	NA	NA	NA	415304	NM_010237	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.015000	0.497512	
mm_26924.1	chr3	20249579	20249779	-	1	NA	NA	NA	-7498	NM_007753	12873	Mm.1135	NM_007753	ENSMUSG00000001865	Cpa3	MC-CPA	carboxypeptidase A3, mast cell	protein-coding	0.015000	0.412935	
mm_61938.1	chr7	90176641	90176841	+	1	NA	NA	NA	46509	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.015000	0.437811	-77(GCGTCTAAAAGA,-,0.00)
mm_20968.1	chr2	151972867	151973067	-	1	NA	NA	NA	427	NM_001289151	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.010000	0.567164	
mm_5669.1	chr1	42695335	42695535	-	1	NA	NA	NA	-610	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.070000	0.646766	
mm_37709.1	chr4	129490668	129490868	-	1	NA	NA	NA	2	NM_080442	58864	Mm.143802	NM_080442	ENSMUSG00000000411	Tssk3	1700014N07Rik|4930594I21Rik|Stk22c|Stk22d|Tsk-3|Tssk-3|Tssk3b	testis-specific serine kinase 3	protein-coding	0.015000	0.542289	
mm_44175.1	chr5	150973459	150973659	+	1	NA	NA	NA	20952	NM_013823	16591	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.005000	0.467662	54(TGCCTTAAAAAC,-,0.00),56(CCTTAAAAACAA,+,0.00)
mm_137648.1	chr17	28558116	28558316	+	1	NA	NA	NA	285	NR_105935	102465585		NR_105935	ENSMUSG00000099152	Mir6969	Gm27305|mmu-mir-6969	microRNA 6969	ncRNA	0.015000	0.522388	
mm_103293.1	chr11	72441148	72441348	-	1	NA	NA	NA	-130	NM_016776	18432	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	0.070000	0.606965	
mm_128541.1	chr15	54952574	54952774	-	1	NA	NA	NA	-32528	NM_001285994	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.070000	0.661692	
mm_33541.1	chr4	130934448	130934648	+	1	NA	NA	NA	-9837	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.010000	0.601990	
mm_44996.1	chr5	38159443	38159643	-	1	NA	NA	NA	-76	NM_010942	18196	Mm.7414	NM_010942	ENSMUSG00000029126	Nsg1	Neep21|m234|p21	neuron specific gene family member 1	protein-coding	0.195000	0.791045	
mm_168304.1	chr11	106786904	106787104	-	1	NA	NA	NA	1490	NM_007840	13207	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0.015000	0.452736	
mm_12942.1	chr2	85136427	85136627	+	1	NA	NA	NA	167	NM_011784	23796	Mm.29368	NM_011784	ENSMUSG00000044338	Aplnr	APJ|Agtrl1|msr/apj	apelin receptor	protein-coding	0.015000	0.567164	
mm_64152.1	chr7	141328061	141328261	+	1	NA	NA	NA	31	NM_027797	71448	Mm.248960	NM_027797	ENSMUSG00000025505	Tmem80	5530601I19Rik	transmembrane protein 80	protein-coding	0.130000	0.696517	
mm_91372.1	chr10	29535769	29535969	-	1	NA	NA	NA	-2	NM_028351	72780	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0.065000	0.676617	
mm_13259.1	chr2	98666151	98666351	+	1	NA	NA	NA	1198594	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.010000	0.358209	
mm_117449.1	chr13	74807851	74808051	-	1	NA	NA	NA	9	NM_009817	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.065000	0.626866	
mm_143902.1	chr17	84855256	84855456	-	1	NA	NA	NA	-64570	NM_028233	72416	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0.010000	0.467662	-56(ACCTTTAAGAGG,-,0.00),-55(CCTTTAAGAGGT,+,0.00),-34(ACCTTTAAGAGG,-,0.00),-33(CCTTTAAGAGGC,+,0.00)
mm_131918.1	chr16	23317458	23317658	+	1	NA	NA	NA	27088	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.020000	0.447761	
mm_68338.1	chr7	106505266	106505466	-	1	NA	NA	NA	-64293	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.020000	0.432836	
mm_42582.1	chr5	117318649	117318849	+	1	NA	NA	NA	-517	NM_001033311	231668	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	0.050000	0.592040	-9(CCCTTTCAAGGG,+,0.00)
mm_131415.1	chr16	14705507	14705707	+	1	NA	NA	NA	-252	NM_011415	20583	Mm.4272	NM_011415	ENSMUSG00000022676	Snai2	Slug|Slugh|Snail2	snail family zinc finger 2	protein-coding	0.055000	0.557214	
mm_142780.1	chr17	50124206	50124406	-	1	NA	NA	NA	66191	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.000000	0.442786	
mm_74497.1	chr8	5105305	5105505	-	1	NA	NA	NA	-118	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.020000	0.338308	
mm_66381.1	chr7	43953989	43954189	-	1	NA	NA	NA	3423	NM_008457	16624	Mm.435488	NM_008457	ENSMUSG00000063089	Klk1b8	Klk8|Nrpn|TADG14|kallikrein|mGK-8	kallikrein 1-related peptidase b8	protein-coding	0.015000	0.562189	
mm_102594.1	chr11	61930152	61930352	-	1	NA	NA	NA	5	NM_019921	56697	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0.140000	0.761194	
mm_4152.1	chr1	171019753	171019953	+	1	NA	NA	NA	927	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.005000	0.532338	
mm_50520.1	chr6	49042790	49042990	+	1	NA	NA	NA	6372	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.035000	0.562189	
mm_165962.1	chr4	93334697	93334897	+	1	NA	NA	NA	714	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.110000	0.696517	
mm_158441.1	chrX	140385764	140385964	-	1	NA	NA	NA	18370	NM_177750	245643	Mm.208683	NM_177750	ENSMUSG00000042425	Frmpd3	B930041G04|EG245643|Gm29750	FERM and PDZ domain containing 3	protein-coding	0.015000	0.472637	
mm_5553.1	chr1	38664840	38665040	-	1	NA	NA	NA	-37696	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.020000	0.467662	
mm_115757.1	chr13	19192697	19192897	-	1	NA	NA	NA	203016	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.542289	
mm_40096.1	chr5	34559355	34559555	+	1	NA	NA	NA	9879	NM_001145859	24055	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.020000	0.587065	
mm_140465.1	chr17	92409715	92409915	+	1	NA	NA	NA	-789202	NM_001315503	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.000000	0.328358	-22(CCCTCTAAAGGC,-,0.00)
mm_109511.1	chr12	111453805	111454005	+	1	NA	NA	NA	11244	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.010000	0.462687	
mm_72847.1	chr8	88309618	88309818	+	1	NA	NA	NA	15514	NM_001037724	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.025000	0.562189	
mm_41347.1	chr5	90501388	90501588	+	1	NA	NA	NA	10774	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.010000	0.383085	
mm_159733.1	chr5	61808707	61808907	+	1	NA	NA	NA	-36	NM_019468	14380	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	0.005000	0.398010	
mm_77324.1	chr8	119424237	119424437	-	1	NA	NA	NA	-12825	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.020000	0.527363	-47(CCTTTAATAGCA,+,0.00)
mm_56548.1	chr6	100181625	100181825	-	1	NA	NA	NA	105633	NM_019743	56353	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.020000	0.507463	
mm_144273.1	chr18	11633272	11633472	+	1	NA	NA	NA	96	NR_045527	225182	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8	protein-coding	0.025000	0.487562	
mm_6404.1	chr1	72862254	72862454	-	1	NA	NA	NA	12511	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.045000	0.552239	
mm_112861.1	chr13	20845934	20846134	+	1	NA	NA	NA	51921	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.522388	
mm_56571.1	chr6	105677486	105677686	-	1	NA	NA	NA	-5	NR_132434	102638038	Mm.360282	NR_132434		Gm15631	OTTMUSG00000024600	predicted gene 15631	ncRNA	0.060000	0.691542	
mm_102033.1	chr11	51763517	51763717	-	1	NA	NA	NA	-46	NM_025535	66397	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	0.055000	0.631841	
mm_108970.1	chr12	102554144	102554344	+	1	NA	NA	NA	-697	NM_007693	12652	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	0.010000	0.517413	
mm_129872.1	chr15	83423647	83423847	-	1	NA	NA	NA	9103	NM_011862	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.000000	0.512438	
mm_59797.1	chr7	29001479	29001679	+	1	NA	NA	NA	18725	NM_008279	26411	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.030000	0.572139	
mm_116165.1	chr13	30781903	30782103	-	1	NA	NA	NA	32770	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.005000	0.562189	
mm_167207.1	chr7	144406808	144407008	-	1	NA	NA	NA	36525	NR_037302	100499519		NR_037302	ENSMUSG00000093912	Mir3470b	mmu-mir-3470b	microRNA 3470b	ncRNA	0.015000	0.572139	
mm_26458.1	chr3	142927379	142927579	+	1	NA	NA	NA	-45475	NM_178654	109333	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	0.005000	0.547264	
mm_161025.1	chr12	3572859	3573059	+	1	NA	NA	NA	-82	NM_007886	13528	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.035000	0.621891	
mm_113016.1	chr13	21981121	21981321	+	1	NA	NA	NA	27	NM_001162929	195236	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	0.055000	0.557214	
mm_39713.1	chr5	27951929	27952129	+	1	NA	NA	NA	110082	NM_008314	15563	Mm.4835	NM_008314	ENSMUSG00000039106	Htr5a	Htr5	5-hydroxytryptamine (serotonin) receptor 5A	protein-coding	0.005000	0.427861	
mm_57148.1	chr6	122728232	122728432	-	1	NA	NA	NA	14413	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.005000	0.502488	
mm_122452.1	chr14	45314692	45314892	-	1	NA	NA	NA	3780	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.000000	0.646766	
mm_101227.1	chr11	20289590	20289790	-	1	NA	NA	NA	-40266	NM_172260	216543	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.030000	0.437811	-34(AAGTATAAAAGA,-,0.00)
mm_115652.1	chr13	12332326	12332526	-	1	NA	NA	NA	8306	NM_033268	11472	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	0.005000	0.422886	
mm_135530.1	chr16	49768602	49768802	-	1	NA	NA	NA	69408	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.000000	0.482587	
mm_64115.1	chr7	141078190	141078390	+	1	NA	NA	NA	61	NM_001162924	56460	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0.045000	0.611940	
mm_131608.1	chr16	19236247	19236447	+	1	NA	NA	NA	50394	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.000000	0.338308	
mm_132234.1	chr16	32750306	32750506	+	1	NA	NA	NA	14520	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.010000	0.447761	
mm_82264.1	chr9	7015754	7015954	-	1	NA	NA	NA	161192	NM_029851	110350	Mm.237596	NM_029851	ENSMUSG00000047193	Dync2h1	4432416O06Rik|AI448217|D030010H02Rik|D330044F14Rik|DHC1b|DHC2|Dnchc2|b2b414Clo|mKIAA1997	dynein cytoplasmic 2 heavy chain 1	protein-coding	0.000000	0.313433	
mm_104610.1	chr11	97206909	97207109	-	1	NA	NA	NA	-19117	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.005000	0.437811	
mm_97590.1	chr11	78945795	78945995	+	1	NA	NA	NA	20604	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.020000	0.572139	
mm_81302.1	chr9	108339209	108339409	+	1	NA	NA	NA	229	NM_001329528	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.080000	0.621891	
mm_143702.1	chr17	80577325	80577525	-	1	NA	NA	NA	-13591	NM_001033443	381113	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.080000	0.636816	
mm_74547.1	chr8	10534809	10535009	-	1	NA	NA	NA	347545	NR_040705	320014	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.030000	0.472637	
mm_68949.1	chr7	126563189	126563389	-	1	NA	NA	NA	3077	NM_146200	56347	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.005000	0.482587	
mm_29461.1	chr3	113574547	113574747	-	1	NA	NA	NA	115	NM_007446	11722	Mm.439727	NM_007446	ENSMUSG00000074264	Amy1	Amy-1|Amy1a|C030014B17Rik	amylase 1, salivary	protein-coding	0.020000	0.353234	
mm_53388.1	chr6	129533285	129533485	+	1	NA	NA	NA	-101	NR_045270	100504641	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0.090000	0.621891	
mm_48274.1	chr5	137962968	137963168	-	1	NA	NA	NA	-109	NM_080450	118446	Mm.332771	NM_080450	ENSMUSG00000056966	Gjc3	Cx29|Gje1	gap junction protein, gamma 3	protein-coding	0.035000	0.532338	27(TCTTTTATGCTG,+,0.00)
mm_139520.1	chr17	56613257	56613457	+	1	NA	NA	NA	-38	NM_018730	54217	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	0.075000	0.616915	
mm_17580.1	chr2	30415344	30415544	-	1	NA	NA	NA	304	NM_007760	12908	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.105000	0.711443	
mm_123766.1	chr14	70208204	70208404	-	1	NA	NA	NA	-633	NM_011366	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.005000	0.572139	
mm_117161.1	chr13	62624059	62624259	-	1	NA	NA	NA	23	NM_001324406	211378	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	0.035000	0.517413	
mm_6401.1	chr1	72862112	72862312	-	1	NA	NA	NA	12653	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.025000	0.462687	
mm_151179.1	chr19	53329351	53329551	+	1	NA	NA	NA	38	NM_010847	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.155000	0.791045	
mm_80210.1	chr9	72448525	72448725	+	1	NA	NA	NA	10096	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.040000	0.537313	
mm_6197.1	chr1	65178990	65179190	-	1	NA	NA	NA	52	NM_010497	15926	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.080000	0.651741	
mm_92344.1	chr10	75837262	75837462	-	1	NA	NA	NA	-2481	NM_010361	14872	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.055000	0.616915	
mm_115040.1	chr13	99434975	99435175	+	1	NA	NA	NA	-22249	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.005000	0.447761	
mm_84420.1	chr9	65629374	65629574	-	1	NA	NA	NA	-1108	NM_028030	71973	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	0.060000	0.661692	
mm_65872.1	chr7	29505707	29505907	-	1	NA	NA	NA	-347	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.020000	0.611940	
mm_21182.1	chr2	155064961	155065161	-	1	NA	NA	NA	9436	NM_016661	269378	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	0.000000	0.532338	
mm_26730.1	chr3	5357806	5358006	-	1	NA	NA	NA	-137083	NR_045905	72608	Mm.384359	NR_045905		2700069I18Rik	-	RIKEN cDNA 2700069I18 gene	ncRNA	0.040000	0.422886	
mm_18922.1	chr2	76742644	76742844	-	1	NA	NA	NA	67429	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.045000	0.487562	
mm_158842.1	chrX	169320026	169320226	-	1	NA	NA	NA	246	NM_001331050	15159	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	0.145000	0.746269	
mm_159088.1	chr2	31474615	31474815	+	1	NA	NA	NA	4407	NR_002687	432466	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.010000	0.517413	
mm_159158.1	chr2	89816325	89816525	+	1	NA	NA	NA	97	NM_146977	258979	Mm.377775	NM_146977	ENSMUSG00000045148	Olfr1255	MOR232-4	olfactory receptor 1255	protein-coding	0.010000	0.417910	
mm_126478.1	chr15	81523752	81523952	+	1	NA	NA	NA	57536	NM_019712	56438	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.030000	0.442786	55(TTCTTTAAAAGC,-,0.00),56(TCTTTAAAAGCC,+,0.00)
mm_40475.1	chr5	53998601	53998801	+	1	NA	NA	NA	178	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.135000	0.651741	
mm_85148.1	chr9	95857788	95857988	-	1	NA	NA	NA	-6	NM_001271569	73410	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	0.155000	0.761194	
mm_87361.1	chr10	43828688	43828888	+	1	NA	NA	NA	2881	NR_131055	71018	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0.020000	0.512438	-31(GTTTAAATAGCC,+,0.00)
mm_19776.1	chr2	106650230	106650430	-	1	NA	NA	NA	34	NR_137201	102640562	Mm.404175	NR_137201	ENSMUSG00000085218	BB218582	-	expressed sequence BB218582	ncRNA	0.030000	0.502488	
mm_2086.1	chr1	87676389	87676589	+	1	NA	NA	NA	56177	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.025000	0.507463	
mm_49209.1	chr6	15720897	15721097	+	1	NA	NA	NA	336	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.090000	0.686567	
mm_132067.1	chr16	30064080	30064280	+	1	NA	NA	NA	-1177	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hairy and enhancer of split 1 (Drosophila)	protein-coding	0.105000	0.741294	
mm_3082.1	chr1	134405631	134405831	+	1	NA	NA	NA	-259	NM_028057	72017	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	0.020000	0.427861	
mm_156847.1	chrX	164394417	164394617	+	1	NA	NA	NA	20995	NM_010216	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.020000	0.467662	
mm_65173.1	chr7	19691851	19692051	-	1	NA	NA	NA	708	NM_001110009	11812	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0.055000	0.572139	
mm_17450.1	chr2	28555793	28555993	-	1	NA	NA	NA	7510	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.000000	0.412935	
mm_77745.1	chr8	126979415	126979615	-	1	NA	NA	NA	-8436	NM_172762	52202	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	0.020000	0.407960	
mm_681.1	chr1	40500277	40500477	+	1	NA	NA	NA	-14985	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.005000	0.497512	
mm_59252.1	chr7	24853811	24854011	+	1	NA	NA	NA	15780	NM_182785	232973	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	0.010000	0.597015	
mm_123275.1	chr14	61370643	61370843	-	1	NA	NA	NA	-10298	NM_026598	68177	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0.010000	0.343284	
mm_119407.1	chr14	44988364	44988564	+	1	NA	NA	NA	353	NM_008964	19217	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.010000	0.547264	
mm_123094.1	chr14	55788622	55788822	-	1	NA	NA	NA	135	NM_001164107	56532	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0.065000	0.582090	
mm_153681.1	chr19	44396578	44396778	-	1	NA	NA	NA	11031	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.005000	0.512438	
mm_100020.1	chr11	114890929	114891129	+	1	NA	NA	NA	988	NM_170758	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.005000	0.378109	
mm_33287.1	chr4	128846065	128846265	+	1	NA	NA	NA	-37975	NM_178110	67525	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0.030000	0.537313	
mm_86776.1	chr10	20148599	20148799	+	1	NA	NA	NA	-221	NM_008635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.155000	0.726368	
mm_4732.1	chr1	181576476	181576676	+	1	NA	NA	NA	-65125	NM_207280	403180	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	0.045000	0.601990	
mm_129620.1	chr15	80080967	80081167	-	1	NA	NA	NA	1839	NR_028281	100302600		NR_028281		Snord43	MBII-47	small nucleolar RNA, C/D box 43	snoRNA	0.015000	0.557214	
mm_64212.1	chr7	141476306	141476506	+	1	NA	NA	NA	26	NM_001252588	64540	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.020000	0.646766	
mm_166417.1	chr5	137151510	137151710	+	1	NA	NA	NA	-35403	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.507463	
mm_167957.1	chrX	141627800	141628000	+	1	NA	NA	NA	97317	NM_010572	16370	Mm.261591	NM_010572	ENSMUSG00000054667	Irs4	IRS-4	insulin receptor substrate 4	protein-coding	0.005000	0.417910	
mm_153571.1	chr19	42752616	42752816	-	1	NA	NA	NA	59	NM_029011	74580	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	0.030000	0.557214	
mm_48497.1	chr5	142800332	142800532	-	1	NA	NA	NA	16955	NM_178242	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.020000	0.582090	
mm_136551.1	chr16	98082336	98082536	-	1	NA	NA	NA	3	NR_015491	320586	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	0.040000	0.532338	
mm_129206.1	chr15	76518269	76518469	-	1	NA	NA	NA	3760	NM_130893	170729	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.045000	0.641791	
mm_148052.1	chr18	71803344	71803544	-	1	NA	NA	NA	547625	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.000000	0.393035	29(CACCTTTAAAAG,-,0.00),30(ACCTTTAAAAGA,-,0.00),31(CCTTTAAAAGAA,+,0.00)
mm_35125.1	chr4	11156150	11156350	-	1	NA	NA	NA	-191	NM_001199105	60599	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.110000	0.726368	
mm_105.1	chr1	9548020	9548220	+	1	NA	NA	NA	74	NR_027664	76187	Mm.28514	NM_175236	ENSMUSG00000025911	Adhfe1	6330565B14Rik|AI043035|Adh8	alcohol dehydrogenase, iron containing, 1	protein-coding	0.055000	0.636816	
mm_114767.1	chr13	88521124	88521324	+	1	NA	NA	NA	-300248	NM_010103	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.025000	0.527363	
mm_84652.1	chr9	71592259	71592459	-	1	NA	NA	NA	1	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	0.070000	0.696517	
mm_120139.1	chr14	60377507	60377707	+	1	NA	NA	NA	-679	NM_028113	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.015000	0.492537	
mm_162875.1	chr10	97506505	97506705	+	1	NA	NA	NA	24274	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.020000	0.442786	
mm_99357.1	chr11	101610555	101610755	+	1	NA	NA	NA	-45	NM_001256318	666331	Mm.303457	NM_001256318		LOC666331	-	uncharacterized LOC666331	protein-coding	0.045000	0.621891	
mm_123417.1	chr14	64327487	64327687	-	1	NA	NA	NA	89369	NM_001253716	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.005000	0.507463	
mm_172672.1	chr8	44938128	44938328	+	1	NA	NA	NA	-11980	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.160000	0.756219	
mm_21210.1	chr2	155653445	155653645	-	1	NA	NA	NA	30665	NR_030757	735275		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	0.020000	0.522388	
mm_12924.1	chr2	85037087	85037287	+	1	NA	NA	NA	67	NM_182990	20833	Mm.219793	NM_182990	ENSMUSG00000027067	Ssrp1	C81323|Hmg1-rs1|Hmgi-rs3|Hmgox|T160	structure specific recognition protein 1	protein-coding	0.110000	0.686567	
mm_84555.1	chr9	67706930	67707130	-	1	NA	NA	NA	20750	NR_106100	102466824		NR_106100	ENSMUSG00000098937	Mir7241	Gm27918|mmu-mir-7241	microRNA 7241	ncRNA	0.005000	0.477612	
mm_41915.1	chr5	105596007	105596207	+	1	NA	NA	NA	76636	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.000000	0.432836	-68(CCCCATTTAAGG,-,0.00),-66(CCATTTAAGGGT,+,0.00)
mm_149823.1	chr19	24415927	24416127	+	1	NA	NA	NA	61447	NM_026520	68034	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding	0.010000	0.457711	
mm_66830.1	chr7	48845117	48845317	-	1	NA	NA	NA	-1546	NM_013808	13009	Mm.17235	NM_013808	ENSMUSG00000030470	Csrp3	CRP3|MLP|MMLP	cysteine and glycine-rich protein 3	protein-coding	0.010000	0.497512	
mm_19479.1	chr2	93014486	93014686	-	1	NA	NA	NA	-14762	NR_110333	433456	Mm.235231	NM_001002794	ENSMUSG00000075027	4631405J19Rik	-	RIKEN cDNA 4631405J19 gene	ncRNA	0.045000	0.696517	
mm_40383.1	chr5	52368732	52368932	+	1	NA	NA	NA	5028	NM_011435	20657	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	0.065000	0.646766	
mm_136896.1	chr17	13014454	13014654	+	1	NA	NA	NA	6715	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.015000	0.353234	
mm_63605.1	chr7	128149073	128149273	+	1	NA	NA	NA	19605	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.025000	0.507463	
mm_154540.1	chrM	14062	14262	-	1	NA	NA	NA	NA	NA									0.015000	0.353234	
mm_57465.1	chr6	125192007	125192207	-	1	NA	NA	NA	-93	NM_025595	66493	Mm.138749	NM_025595	ENSMUSG00000030335	Mrpl51	2610511M02Rik|CDA09|HSPC241|Mrp64	mitochondrial ribosomal protein L51	protein-coding	0.065000	0.572139	
mm_84701.1	chr9	72663160	72663360	-	1	NA	NA	NA	913	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.060000	0.522388	
mm_129560.1	chr15	79545641	79545841	-	1	NA	NA	NA	818	NM_199079	67040	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.005000	0.412935	
mm_168960.1	chr12	80221057	80221257	-	1	NA	NA	NA	39214	NM_134156	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.015000	0.527363	
mm_99579.1	chr11	104231348	104231548	+	1	NA	NA	NA	12	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.135000	0.771144	
mm_72090.1	chr8	71580372	71580572	+	1	NA	NA	NA	11545	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.015000	0.517413	
mm_58022.1	chr6	136661679	136661879	-	1	NA	NA	NA	114	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.075000	0.621891	
mm_146954.1	chr18	32560035	32560235	-	1	NA	NA	NA	-101	NM_001048207	71683	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	0.045000	0.547264	80(GTGTTTAAAAAA,-,0.00)
mm_127242.1	chr15	99592369	99592569	+	1	NA	NA	NA	1441	NM_009701	11830	Mm.45580	NM_009701	ENSMUSG00000044217	Aqp5	-	aquaporin 5	protein-coding	0.020000	0.567164	
mm_136700.1	chr17	7324569	7324769	+	1	NA	NA	NA	9	NR_046291	21461	Mm.264651	NM_011553	ENSMUSG00000071322	Tcp10a	D17Leh66A|D17Leh66aa|Gm10326|T66A-a|Tcp-10a	t-complex protein 10a	protein-coding	0.015000	0.487562	-58(GGCCCTTTAAGA,-,0.00),-55(CCTTTAAGACAG,+,0.00)
mm_140727.1	chr17	15498193	15498393	-	1	NA	NA	NA	-17	NM_011185	19170	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	0.095000	0.666667	
mm_150823.1	chr19	44511137	44511337	+	1	NA	NA	NA	17765	NM_011720	22423	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	0.040000	0.587065	-14(CCTTTTCAGGGG,+,0.00)
mm_70108.1	chr7	142664604	142664804	-	1	NA	NA	NA	2112	NM_001315488	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.005000	0.572139	
mm_44513.1	chr5	24344437	24344637	-	1	NA	NA	NA	7067	NM_013569	16511	Mm.6539	NM_013569	ENSMUSG00000038319	Kcnh2	AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding	0.010000	0.562189	
mm_54170.1	chr6	23272427	23272627	-	1	NA	NA	NA	-24263	NM_028462	73191	Mm.55115	NM_028462	ENSMUSG00000029697	Fezf1	3110069A13Rik|Fez|Zfp312-like|fez-like	Fez family zinc finger 1	protein-coding	0.020000	0.358209	
mm_6026.1	chr1	59237116	59237316	-	1	NA	NA	NA	15	NM_028717	74018	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	amyotrophic lateral sclerosis 2 (juvenile)	protein-coding	0.125000	0.736318	
mm_2981.1	chr1	133131147	133131347	+	1	NA	NA	NA	81	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.105000	0.671642	
mm_56458.1	chr6	98342576	98342776	-	1	NA	NA	NA	78	NM_001128092	330390	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0.015000	0.567164	83(TCCTTTAGAGAC,+,0.00)
mm_111088.1	chr12	80260432	80260632	-	1	NA	NA	NA	-151	NM_001346669	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.065000	0.651741	
mm_19883.1	chr2	114049572	114049772	-	1	NA	NA	NA	3203	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.025000	0.472637	
mm_86041.1	chr9	114461632	114461832	-	1	NA	NA	NA	34812	NM_009916	12773	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	0.025000	0.547264	-37(GCCCATAAGAGG,-,0.00)
mm_43401.1	chr5	135806781	135806981	+	1	NA	NA	NA	-11225	NM_021403	58212	Mm.271230	NM_021403	ENSMUSG00000039860	Srrm3	2900083I11Rik|AB041661|SRm300-like|Srrm2l	serine/arginine repetitive matrix 3	protein-coding	0.080000	0.651741	
mm_132220.1	chr16	32631109	32631309	+	1	NA	NA	NA	-13434	NM_001110147	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.010000	0.308458	-30(CACTATAAATAG,-,0.00)
mm_53463.1	chr6	134897990	134898190	+	1	NA	NA	NA	129	NR_029441	72813	Mm.409034	NR_029441	ENSMUSG00000100876	2810454H06Rik	-	RIKEN cDNA 2810454H06 gene	ncRNA	0.040000	0.527363	
mm_20445.1	chr2	129310061	129310261	-	1	NA	NA	NA	-189	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.025000	0.442786	
mm_60221.1	chr7	43562204	43562404	+	1	NA	NA	NA	-66	NM_001008549	210104	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0.070000	0.562189	
mm_65590.1	chr7	27327386	27327586	-	1	NA	NA	NA	6162	NM_001113549	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.060000	0.621891	
mm_66955.1	chr7	62419344	62419544	-	1	NA	NA	NA	695	NM_011746	22652	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	0.035000	0.562189	
mm_81036.1	chr9	105018273	105018473	+	1	NA	NA	NA	-34895	NM_053159	94062	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	0.010000	0.363184	
mm_121139.1	chr14	101891212	101891412	+	1	NA	NA	NA	50689	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.005000	0.388060	
mm_56154.1	chr6	87845219	87845419	-	1	NA	NA	NA	5787	NM_001109746	12785	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	0.010000	0.447761	-54(TACTTTATAAAG,-,0.00),-52(CTTTATAAAGGT,+,0.00)
mm_93465.1	chr10	111009882	111010082	-	1	NA	NA	NA	84	NM_172554	320150	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0.120000	0.701493	
mm_143431.1	chr17	70851103	70851303	-	1	NA	NA	NA	7	NM_009372	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.075000	0.706468	
mm_53609.1	chr6	139587114	139587314	+	1	NA	NA	NA	-85305	NM_001128090	632971	Mm.475610	NM_001128090	ENSMUSG00000092164	Rergl	EG632971	RERG/RAS-like	protein-coding	0.050000	0.482587	
mm_100602.1	chr11	121237211	121237411	+	1	NA	NA	NA	75	NM_026272	67608	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	0.080000	0.631841	
mm_134416.1	chr16	17722808	17723008	-	1	NA	NA	NA	-8	NM_001285886	94112	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.100000	0.631841	
mm_34026.1	chr4	138057875	138058075	+	1	NA	NA	NA	64519	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.035000	0.562189	
mm_173320.1	chrY	90736838	90737038	+	1	NA	NA	NA	18112	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.497512	
mm_82656.1	chr9	22071292	22071492	-	1	NA	NA	NA	-16	NM_001310759	319601	Mm.347707	NM_177318	ENSMUSG00000038895	Zfp653	E430039K05Rik|Znf653	zinc finger protein 653	protein-coding	0.115000	0.706468	
mm_50555.1	chr6	49047653	49047853	+	1	NA	NA	NA	11235	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.025000	0.492537	
mm_93537.1	chr10	115384256	115384456	-	1	NA	NA	NA	79	NM_025780	66816	Mm.32314	NM_025780	ENSMUSG00000020137	Thap2	2900040O07Rik|9030625G08Rik|AI450385|AI649097	THAP domain containing, apoptosis associated protein 2	protein-coding	0.105000	0.691542	
mm_81701.1	chr9	111271718	111271918	+	1	NA	NA	NA	-27	NM_175266	77781	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	0.075000	0.611940	
mm_25406.1	chr3	107278920	107279120	+	1	NA	NA	NA	162	NM_026774	68576	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	0.110000	0.631841	
mm_32911.1	chr4	119132531	119132731	+	1	NA	NA	NA	23886	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.030000	0.572139	
mm_116565.1	chr13	47010671	47010871	-	1	NA	NA	NA	4079	NM_175340	105193	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	0.030000	0.542289	
mm_104786.1	chr11	98706462	98706662	-	1	NA	NA	NA	5249	NM_009971	12985	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.015000	0.577114	
mm_61113.1	chr7	54835500	54835700	+	1	NA	NA	NA	355	NM_178705	233271	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	0.055000	0.606965	
mm_83047.1	chr9	37544458	37544658	-	1	NA	NA	NA	5303	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.035000	0.577114	
mm_165435.1	chr2	153686818	153687018	+	1	NA	NA	NA	37469	NM_001271747	13436	Mm.89772	NM_010068	ENSMUSG00000027478	Dnmt3b	MmuIIIB	DNA methyltransferase 3B	protein-coding	0.005000	0.462687	
mm_125419.1	chr15	41830913	41831113	+	1	NA	NA	NA	55	NM_001130164	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.010000	0.427861	
mm_63260.1	chr7	126663858	126664058	+	1	NA	NA	NA	12399	NM_133670	20887	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|Stp|Stp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	0.025000	0.512438	
mm_15601.1	chr2	160670078	160670278	+	1	NA	NA	NA	24281	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.025000	0.402985	
mm_14538.1	chr2	132792352	132792552	+	1	NA	NA	NA	11174	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.035000	0.547264	
mm_109218.1	chr12	108765868	108766068	+	1	NA	NA	NA	-27343	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.025000	0.542289	46(TTCTCTTAAAGC,-,0.00)
mm_133681.1	chr16	92470848	92471048	+	1	NA	NA	NA	-4779	NM_001081549	54720	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.015000	0.557214	-22(GCTTTAAGACCC,+,0.00)
mm_138600.1	chr17	35555117	35555317	+	1	NA	NA	NA	3089	NM_001008424	386463	Mm.426664	NM_001008424	ENSMUSG00000039518	Cdsn	AI747712	corneodesmosin	protein-coding	0.040000	0.577114	
mm_89072.1	chr10	82985349	82985549	+	1	NA	NA	NA	-48	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.090000	0.676617	
mm_72521.1	chr8	83972954	83973154	+	1	NA	NA	NA	76	NM_008854	18747	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0.135000	0.800995	
mm_30556.1	chr4	3700723	3700923	+	1	NA	NA	NA	-14141	NR_028126	70720	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.005000	0.432836	
mm_74791.1	chr8	22186875	22187075	-	1	NA	NA	NA	-1156	NM_001004140	80986	Mm.22448	NM_001004140	ENSMUSG00000037725	Ckap2	AI461656|AW228814|LB1	cytoskeleton associated protein 2	protein-coding	0.005000	0.512438	
mm_69011.1	chr7	126704432	126704632	-	1	NA	NA	NA	284	NM_009898	12721	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.045000	0.681592	
mm_92567.1	chr10	79874505	79874705	-	1	NA	NA	NA	29	NM_181681	216152	Mm.29678	NM_181681	ENSMUSG00000035835	Plppr3	Lppr3|Prg2	phospholipid phosphatase related 3	protein-coding	0.140000	0.716418	
mm_162172.1	chrX	101418869	101419069	-	1	NA	NA	NA	945	NM_001177986	56364	Mm.23458	NM_019831	ENSMUSG00000031310	Zmym3	9030216B10Rik|AW122925|DXS6673El|Zfp261	zinc finger, MYM-type 3	protein-coding	0.025000	0.577114	
mm_75709.1	chr8	68901207	68901407	-	1	NA	NA	NA	20752	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.025000	0.502488	
mm_153576.1	chr19	43388111	43388311	-	1	NA	NA	NA	144	NM_001081257	545291	Mm.442200	NM_001081257	ENSMUSG00000074852	Hpse2	Gm968|Hpa2	heparanase 2	protein-coding	0.015000	0.567164	
mm_91330.1	chr10	25271554	25271754	-	1	NA	NA	NA	27509	NM_018747	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.025000	0.338308	
mm_149946.1	chr19	27322513	27322713	+	1	NA	NA	NA	-6	NM_183179	240595	Mm.269759	NM_183179	ENSMUSG00000047298	Kcnv2	KV11.1	potassium channel, subfamily V, member 2	protein-coding	0.005000	0.522388	
mm_101126.1	chr11	12054203	12054403	-	1	NA	NA	NA	-16883	NM_010345	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.005000	0.492537	
mm_170477.1	chr19	11912077	11912277	-	1	NA	NA	NA	-222	NM_172635	225929	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	0.060000	0.542289	
mm_150347.1	chr19	34642974	34643174	+	1	NA	NA	NA	2185	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.000000	0.437811	
mm_43057.1	chr5	124194765	124194965	+	1	NA	NA	NA	-7683	NM_001289472	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.020000	0.532338	
mm_46310.1	chr5	100564983	100565183	-	1	NA	NA	NA	7122	NM_139198	231507	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.010000	0.313433	
mm_165685.1	chr3	90695071	90695271	-	1	NA	NA	NA	550	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.010000	0.487562	
mm_23436.1	chr3	59304852	59305052	+	1	NA	NA	NA	39304	NM_001162884	242050	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.005000	0.398010	
mm_161361.1	chr14	57057895	57058095	-	1	NA	NA	NA	35	NM_016975	14611	Mm.57207	NM_016975	ENSMUSG00000048582	Gja3	Cnx46|Cx43|Cx46|Gja-3	gap junction protein, alpha 3	protein-coding	0.135000	0.751244	
mm_127347.1	chr15	100616229	100616429	+	1	NA	NA	NA	667	NM_011873	23994	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0.050000	0.606965	
mm_45128.1	chr5	48749243	48749443	-	1	NA	NA	NA	140214	NM_030265	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.000000	0.363184	
mm_137052.1	chr17	17927908	17928108	+	1	NA	NA	NA	40184	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.000000	0.343284	
mm_52509.1	chr6	115361022	115361222	+	1	NA	NA	NA	-22	NM_001308352	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.140000	0.761194	
mm_125352.1	chr15	39391695	39391895	+	1	NA	NA	NA	193509	NM_053271	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.015000	0.442786	-14(TTTTTAATAGGC,+,0.00)
mm_36470.1	chr4	82705583	82705783	-	1	NA	NA	NA	153978	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0.015000	0.497512	
mm_2679.1	chr1	127300333	127300533	+	1	NA	NA	NA	95447	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.005000	0.502488	
mm_148928.1	chr19	7014275	7014475	+	1	NA	NA	NA	5094	NM_153795	108101	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.020000	0.567164	
mm_69042.1	chr7	126800292	126800492	-	1	NA	NA	NA	55	NM_001177308	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.000000	0.457711	
mm_8384.1	chr1	151343961	151344161	-	1	NA	NA	NA	-437	NM_001039512	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.035000	0.552239	
mm_148441.1	chr19	3948765	3948965	+	1	NA	NA	NA	-9943	NM_028545	73458	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	0.030000	0.661692	
mm_141287.1	chr17	28008466	28008666	-	1	NA	NA	NA	72018	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.035000	0.616915	
mm_58878.1	chr7	16993705	16993905	+	1	NA	NA	NA	-783	NM_001101535	434130	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	ENSMUSG00000041117	coiled-coil domain containing 8	protein-coding	0.015000	0.651741	
mm_140783.1	chr17	17893855	17894055	-	1	NA	NA	NA	6131	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.000000	0.303483	-46(GAGTATAAAGGC,-,0.00),-31(GTTTTTAAAAGA,-,0.00)
mm_152239.1	chr19	8712820	8713020	-	1	NA	NA	NA	977	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.015000	0.532338	
mm_165966.1	chr4	95505030	95505230	+	1	NA	NA	NA	-52377	NM_001113412	75578	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.005000	0.393035	
mm_10566.1	chr2	18057037	18057237	+	1	NA	NA	NA	-709	NR_106115	102466840		NR_106115	ENSMUSG00000099050	Mir7655	Gm27794|mmu-mir-7655	microRNA 7655	ncRNA	0.130000	0.736318	-33(CGCTATTTAAGT,-,0.00)
mm_16640.1	chr2	5942672	5942872	-	1	NA	NA	NA	20	NM_001081131	209692	Mm.222517	NM_001081131	ENSMUSG00000025815	Dhtkd1	C330018I04Rik	dehydrogenase E1 and transketolase domain containing 1	protein-coding	0.050000	0.572139	
mm_99348.1	chr11	101583346	101583546	+	1	NA	NA	NA	1204	NM_144830	217203	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.000000	0.343284	
mm_85827.1	chr9	110422409	110422609	-	1	NA	NA	NA	2701	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.000000	0.557214	
mm_81189.1	chr9	107547234	107547434	+	1	NA	NA	NA	24	NM_053253	114602	Mm.28331	NM_053253	ENSMUSG00000010044	Zmynd10	Blu	zinc finger, MYND domain containing 10	protein-coding	0.070000	0.547264	
mm_29797.1	chr3	127779935	127780135	-	1	NA	NA	NA	492	NM_027808	71481	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	0.025000	0.527363	
mm_109889.1	chr12	5491348	5491548	-	1	NA	NA	NA	114946	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	0.005000	0.412935	
mm_162459.1	chr1	128586829	128587029	-	1	NA	NA	NA	5370	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.015000	0.432836	
mm_91312.1	chr10	24922043	24922243	-	1	NA	NA	NA	5327	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.000000	0.373134	
mm_42948.1	chr5	122995001	122995201	+	1	NA	NA	NA	5747	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.000000	0.492537	
mm_11778.1	chr2	38998221	38998421	+	1	NA	NA	NA	12	NM_029687	76646	Mm.358777	NM_029687	ENSMUSG00000035295	Wdr38	1700123D08Rik	WD repeat domain 38	protein-coding	0.055000	0.631841	
mm_62317.1	chr7	100318939	100319139	+	1	NA	NA	NA	33519	NM_177161	320452	Mm.150294	NM_177161	ENSMUSG00000051048	P4ha3	D930031A02Rik	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III	protein-coding	0.010000	0.562189	
mm_112684.1	chr13	16029865	16030065	+	1	NA	NA	NA	18114	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.402985	
mm_24976.1	chr3	96824014	96824214	+	1	NA	NA	NA	5237	NM_001163497	54215	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	0.015000	0.467662	
mm_162577.1	chr1	177447756	177447956	+	1	NA	NA	NA	2035	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.020000	0.507463	
mm_158613.1	chrX	152644048	152644248	-	1	NA	NA	NA	1	NM_001290687	110380	Mm.40796	NM_172441	ENSMUSG00000045180	Shroom2	4832440C16|Apxl|C630003H05Rik|Shrm2	shroom family member 2	protein-coding	0.010000	0.442786	
mm_18177.1	chr2	45110153	45110353	-	1	NA	NA	NA	24	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.105000	0.686567	
mm_51424.1	chr6	78427281	78427481	+	1	NA	NA	NA	1398	NM_009042	19692	Mm.142731	NM_009042	ENSMUSG00000059654	Reg1	-	regenerating islet-derived 1	protein-coding	0.005000	0.472637	
mm_137716.1	chr17	29100039	29100239	+	1	NA	NA	NA	6370	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.005000	0.547264	
mm_46018.1	chr5	90904114	90904314	-	1	NA	NA	NA	315	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.020000	0.597015	
mm_139117.1	chr17	47436490	47436690	+	1	NA	NA	NA	-49	NM_145489	224833	Mm.218444	NM_145489	ENSMUSG00000034382	AI661453	-	expressed sequence AI661453	protein-coding	0.130000	0.741294	
mm_7679.1	chr1	128589180	128589380	-	1	NA	NA	NA	3019	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.035000	0.552239	
mm_55536.1	chr6	70766310	70766510	-	1	NA	NA	NA	25765	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.010000	0.388060	37(CTTTTTAAAAAG,+,0.00),37(CTTTTTAAAAAG,-,0.00)
mm_88663.1	chr10	80016615	80016815	+	1	NA	NA	NA	43	NM_001142701	70719	Mm.243954	NM_027521	ENSMUSG00000035697	Hmha1	6330406L22Rik|AW539505|Ha-1	histocompatibility (minor) HA-1	protein-coding	0.020000	0.636816	
mm_40477.1	chr5	54045815	54046015	+	1	NA	NA	NA	47392	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.005000	0.472637	
mm_36804.1	chr4	103173363	103173563	-	1	NA	NA	NA	41421	NM_177732	242585	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.000000	0.407960	
mm_76461.1	chr8	85364952	85365152	-	1	NA	NA	NA	272	NM_175441	213435	Mm.32804	NM_175441	ENSMUSG00000031698	Mylk3	D830007F02Rik|MLCK	myosin light chain kinase 3	protein-coding	0.020000	0.562189	
mm_159584.1	chr4	121188339	121188539	-	1	NA	NA	NA	26645	NM_001346660	109263	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	0.005000	0.223881	
mm_35418.1	chr4	35113548	35113748	-	1	NA	NA	NA	-38407	NM_199157	387510	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.005000	0.462687	
mm_157866.1	chrX	75272864	75273064	-	1	NA	NA	NA	107077	NM_007977	14069	Mm.1805	NM_007977	ENSMUSG00000031196	F8	Cf-8|Cf8|FVIII	coagulation factor VIII	protein-coding	0.005000	0.323383	
mm_13064.1	chr2	91115492	91115692	+	1	NA	NA	NA	-2552	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.055000	0.646766	89(CTTTTTAAAAAG,+,0.00),89(CTTTTTAAAAAG,-,0.00)
mm_168240.1	chr10	81846410	81846610	+	1	NA	NA	NA	-17424	NM_001243067	73610	Mm.490466	NM_001243067	ENSMUSG00000096795	Zfp433	1700123A16Rik	zinc finger protein 433	protein-coding	0.055000	0.587065	
mm_143537.1	chr17	73950307	73950507	-	1	NA	NA	NA	-211	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.005000	0.532338	
mm_138538.1	chr17	35251126	35251326	+	1	NA	NA	NA	-63	NR_106169	102465886		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	0.030000	0.587065	
mm_153010.1	chr19	30539613	30539813	-	1	NA	NA	NA	-34	NR_003650	546723	Mm.301509	NM_001037169		Ppp1r2-ps3	EG546723|Gm5972	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 3	pseudo	0.135000	0.731343	
mm_11671.1	chr2	35284679	35284879	+	1	NA	NA	NA	2399	NM_146120	227753	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.030000	0.542289	
mm_82376.1	chr9	14615350	14615550	-	1	NA	NA	NA	-450	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.010000	0.477612	
mm_49230.1	chr6	17065081	17065281	+	1	NA	NA	NA	32	NM_207176	21753	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	0.125000	0.711443	
mm_171752.1	chr5	104571615	104571815	+	1	NA	NA	NA	43	NM_001346671	69623	Mm.69919	NM_027142		Zfp33b	2310012P17Rik	zinc finger protein 33B	protein-coding	0.035000	0.537313	
mm_31344.1	chr4	46508296	46508496	+	1	NA	NA	NA	19067	NM_053179	94181	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.025000	0.422886	
mm_90812.1	chr10	7824489	7824689	-	1	NA	NA	NA	-7881	NM_172785	237256	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	0.010000	0.407960	-39(GTTTATTAAAGG,-,0.00)
mm_2231.1	chr1	91022625	91022825	+	1	NA	NA	NA	23998	NM_001111312	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.025000	0.512438	
mm_11045.1	chr2	27165407	27165607	+	1	NA	NA	NA	0	NM_138942	13166	Mm.167781	NM_138942	ENSMUSG00000000889	Dbh	-	dopamine beta hydroxylase	protein-coding	0.015000	0.582090	
mm_14834.1	chr2	147364923	147365123	+	1	NA	NA	NA	29	NM_008780	18503	Mm.315502	NM_008780	ENSMUSG00000037034	Pax1	Pax-1|hbs|hunchback|un|undulated|wt	paired box 1	protein-coding	0.080000	0.611940	
mm_152836.1	chr19	23273806	23274006	-	1	NA	NA	NA	-9	NM_001252684	226026	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	0.150000	0.766169	
mm_121252.1	chr14	103057436	103057636	+	1	NA	NA	NA	10524	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.010000	0.547264	
mm_21169.1	chr2	154657917	154658117	-	1	NA	NA	NA	991	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.025000	0.502488	
mm_27432.1	chr3	51560541	51560741	-	1	NA	NA	NA	182	NM_080793	73251	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	0.075000	0.681592	
mm_93374.1	chr10	105474041	105474241	-	1	NA	NA	NA	100338	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.000000	0.328358	
mm_12606.1	chr2	74681924	74682124	+	1	NA	NA	NA	-299	NM_008273	15431	Mm.207763	NM_008273	ENSMUSG00000042499	Hoxd11	E230017H14Rik|Hox-4.6|Hox-5.4|Hox-5.5	homeobox D11	protein-coding	0.100000	0.756219	
mm_56395.1	chr6	96033186	96033386	-	1	NA	NA	NA	-79868	NM_182808	320265	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.005000	0.487562	
mm_107418.1	chr12	34984728	34984928	+	1	NA	NA	NA	67	NM_029294	75456	Mm.79179	NM_029294	ENSMUSG00000092305	Prps1l1	1700011K15Rik	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding	0.030000	0.537313	
mm_128684.1	chr15	60824822	60825022	-	1	NA	NA	NA	158	NM_001162926	399603	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	0.100000	0.691542	-22(CTCTTTAAATGC,-,0.00)
mm_124613.1	chr15	3279431	3279631	+	1	NA	NA	NA	8554	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.025000	0.537313	
mm_137383.1	chr17	25773706	25773906	+	1	NA	NA	NA	30	NM_026238	67563	Mm.24201	NM_026238	ENSMUSG00000002280	Narfl	9030612I22Rik|AI504405|PRN	nuclear prelamin A recognition factor-like	protein-coding	0.075000	0.592040	
mm_110674.1	chr12	65172489	65172689	-	1	NA	NA	NA	-9	NM_172578	217653	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	0.115000	0.666667	
mm_127331.1	chr15	100421577	100421777	+	1	NA	NA	NA	1378	NM_001146161	18174	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0.010000	0.447761	
mm_136811.1	chr17	12391685	12391885	+	1	NA	NA	NA	13176	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.005000	0.507463	
mm_19794.1	chr2	109280643	109280843	-	1	NA	NA	NA	5	NM_139303	228421	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	0.095000	0.597015	
mm_138204.1	chr17	34299561	34299761	+	1	NA	NA	NA	-6206	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.005000	0.497512	
mm_137809.1	chr17	30004765	30004965	+	1	NA	NA	NA	-222	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.135000	0.791045	
mm_119646.1	chr14	51984741	51984941	+	1	NA	NA	NA	8	NM_198249	268739	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	0.120000	0.781095	
mm_61989.1	chr7	91090795	91090995	+	1	NA	NA	NA	109	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.025000	0.502488	-100(CTATATATAGCC,+,0.00)
mm_90314.1	chr10	127059265	127059465	+	1	NA	NA	NA	819	NM_001033262	216438	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	0.060000	0.731343	
mm_112410.1	chr13	3611237	3611437	+	1	NA	NA	NA	-229	NM_134063	105203	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	0.050000	0.542289	
mm_153049.1	chr19	32069578	32069778	-	1	NA	NA	NA	33462	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.010000	0.422886	77(GAGTCTAAATGC,-,0.00)
mm_95959.1	chr11	58847090	58847290	+	1	NA	NA	NA	6074	NM_146537	258530	Mm.377556	NM_146537	ENSMUSG00000094805	Olfr311	MOR222-1	olfactory receptor 311	protein-coding	0.060000	0.592040	
mm_118702.1	chr14	22159014	22159214	+	1	NA	NA	NA	139402	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.010000	0.452736	
mm_53840.1	chr6	148354762	148354962	+	1	NA	NA	NA	206	NR_003634	66184	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	0.095000	0.641791	
mm_107708.1	chr12	55565123	55565323	+	1	NA	NA	NA	18	NM_001277340	79459	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	0.055000	0.597015	
mm_134222.1	chr16	11254186	11254386	-	1	NA	NA	NA	39	NM_001130008	14852	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	0.110000	0.626866	
mm_106211.1	chr11	116852033	116852233	-	1	NA	NA	NA	961	NM_011358	20382	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0.075000	0.597015	
mm_170949.1	chr2	53191086	53191286	-	1	NA	NA	NA	1	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.090000	0.671642	
mm_152795.1	chr19	21472479	21472679	-	1	NA	NA	NA	82	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.085000	0.726368	
mm_107279.1	chr12	29535123	29535323	+	1	NA	NA	NA	318	NM_001093776	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.035000	0.522388	
mm_123848.1	chr14	70707936	70708136	-	1	NA	NA	NA	-54952	NM_181345	328440	Mm.347749	NM_181345	ENSMUSG00000047911	Npm2	-	nucleophosmin/nucleoplasmin 2	protein-coding	0.010000	0.427861	
mm_28996.1	chr3	101536341	101536541	-	1	NA	NA	NA	68266	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.025000	0.557214	
mm_125585.1	chr15	59612008	59612208	+	1	NA	NA	NA	-36546	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.000000	0.412935	
mm_122613.1	chr14	51060778	51060978	-	1	NA	NA	NA	-3636	NM_001011875	497106	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	0.015000	0.477612	
mm_9511.1	chr1	173741596	173741796	-	1	NA	NA	NA	113	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.015000	0.467662	
mm_137837.1	chr17	30919499	30919699	+	1	NA	NA	NA	17732	NM_021332	14652	Mm.390969	NM_021332	ENSMUSG00000024027	Glp1r	GLP-1R|GLP1Rc	glucagon-like peptide 1 receptor	protein-coding	0.005000	0.452736	-88(TCCTTAATAGAG,+,0.00)
mm_111442.1	chr12	96736454	96736654	-	1	NA	NA	NA	-689332	NR_103800	69423	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0.010000	0.427861	
mm_169682.1	chr15	70857198	70857398	-	1	NA	NA	NA	870540	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding	0.060000	0.646766	
mm_115792.1	chr13	19338669	19338869	-	1	NA	NA	NA	57044	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.378109	
mm_1822.1	chr1	82586865	82587065	+	1	NA	NA	NA	44	NM_007734	12828	Mm.389135	NM_007734	ENSMUSG00000079465	Col4a3	[a]3(IV)|alpha3(IV)	collagen, type IV, alpha 3	protein-coding	0.035000	0.626866	
mm_119956.1	chr14	55094937	55095137	+	1	NA	NA	NA	253	NM_153083	105663	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding	0.095000	0.651741	
mm_29860.1	chr3	130060647	130060847	-	1	NA	NA	NA	160	NM_207209	99683	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.170000	0.776119	
mm_28719.1	chr3	95673688	95673888	-	1	NA	NA	NA	14129	NM_144899	229595	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.025000	0.557214	
mm_164484.1	chr16	75909096	75909296	-	1	NA	NA	NA	70	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.015000	0.457711	
mm_46647.1	chr5	108587717	108587917	-	1	NA	NA	NA	-37790	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.000000	0.248756	
mm_67602.1	chr7	83735439	83735639	-	1	NA	NA	NA	-49	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.005000	0.562189	
mm_88957.1	chr10	81390254	81390454	+	1	NA	NA	NA	-2710	NM_001099917	72273	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.030000	0.567164	
mm_144598.1	chr18	32377133	32377333	+	1	NA	NA	NA	16	NM_009668	30948	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0.090000	0.731343	
mm_45368.1	chr5	66019180	66019380	-	1	NA	NA	NA	-14995	NR_027961	231253	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.085000	0.646766	
mm_96047.1	chr11	59559035	59559235	+	1	NA	NA	NA	12603	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.005000	0.388060	
mm_122501.1	chr14	46821946	46822146	-	1	NA	NA	NA	196	NM_022023	63985	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	0.145000	0.696517	
mm_40802.1	chr5	68031687	68031887	+	1	NA	NA	NA	-48	NM_001018019	433899	Mm.332422	NM_001018019	ENSMUSG00000068082	Grxcr1	Tg(Eno2-Gabrb3)0370Brll|pi|tde	glutaredoxin, cysteine rich 1	protein-coding	0.010000	0.437811	
mm_40803.1	chr5	69460954	69461154	+	1	NA	NA	NA	81593	NM_023784	75581	Mm.154776	NM_023784	ENSMUSG00000029158	Yipf7	2310016N21Rik|Yip1b	Yip1 domain family, member 7	protein-coding	0.050000	0.567164	
mm_6021.1	chr1	59119672	59119872	-	1	NA	NA	NA	34	NM_001037812	381259	Mm.261275	NM_001033449	ENSMUSG00000038079	Tmem237	AI853305|Als2cr4|Gm972	transmembrane protein 237	protein-coding	0.085000	0.696517	
mm_146902.1	chr18	31243064	31243264	-	1	NA	NA	NA	73964	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding	0.020000	0.388060	-2(CAGTTTATAAGC,-,0.00)
mm_138617.1	chr17	35823331	35823531	+	1	NA	NA	NA	74	NM_008027	14251	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	0.085000	0.696517	
mm_111085.1	chr12	80260264	80260464	-	1	NA	NA	NA	7	NM_134156	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.105000	0.716418	
mm_114380.1	chr13	63239975	63240175	+	1	NA	NA	NA	46	NR_110521	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.130000	0.736318	
mm_147418.1	chr18	46175906	46176106	-	1	NA	NA	NA	22812	NM_001170855	28105	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.030000	0.467662	
mm_120710.1	chr14	71880598	71880798	+	1	NA	NA	NA	23989	NR_046274	74667	Mm.159286	NR_046274		4930434J06Rik	-	RIKEN cDNA 4930434J06 gene	ncRNA	0.010000	0.407960	
mm_151848.1	chr19	5771292	5771492	-	1	NA	NA	NA	9	NM_023912	78891	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0.110000	0.731343	
mm_165348.1	chr2	119186138	119186338	+	1	NA	NA	NA	11729	NM_001039223	623781	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	OTTMUSG00000015762	predicted gene 14137	protein-coding	0.015000	0.532338	
mm_35942.1	chr4	53096310	53096510	-	1	NA	NA	NA	63485	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.010000	0.412935	
mm_76784.1	chr8	99416411	99416611	-	1	NA	NA	NA	-40	NR_133570	12564	Mm.441131	NM_007667	ENSMUSG00000036510	Cdh8	AI851472|cad8	cadherin 8	protein-coding	0.035000	0.601990	
mm_36348.1	chr4	73791046	73791246	-	1	NA	NA	NA	-98	NR_046042	667768	Mm.244966	NR_046041	ENSMUSG00000085034	Gm11240	OTTMUSG00000000286	predicted gene 11240	ncRNA	0.070000	0.671642	
mm_171393.1	chr4	12232704	12232904	+	1	NA	NA	NA	-60789	NM_026558	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.070000	0.557214	
mm_4111.1	chr1	167618173	167618373	+	1	NA	NA	NA	8	NM_001159731	20183	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0.035000	0.557214	
mm_56062.1	chr6	86780602	86780802	-	1	NA	NA	NA	-5588	NM_001331120	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.005000	0.442786	
mm_130882.1	chr15	102248991	102249191	-	1	NA	NA	NA	-2591	NM_001042727	19411	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.015000	0.532338	
mm_23933.1	chr3	83863178	83863378	+	1	NA	NA	NA	-21670	NM_011905	24088	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.000000	0.557214	
mm_48502.1	chr5	142816508	142816708	-	1	NA	NA	NA	779	NM_178242	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.060000	0.597015	
mm_166030.1	chr4	126103128	126103328	-	1	NA	NA	NA	-729	NM_028800	74178	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	0.030000	0.557214	-81(GCCCTTTAAAGG,-,0.00),-80(CCCTTTAAAGGG,+,0.00),-80(CCCTTTAAAGGG,-,0.00),-79(CCTTTAAAGGGA,+,0.00)
mm_153874.1	chr19	46863463	46863663	-	1	NA	NA	NA	98788	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.040000	0.552239	
mm_101612.1	chr11	35828604	35828804	-	1	NA	NA	NA	5824	NM_025936	104458	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.010000	0.457711	
mm_7655.1	chr1	128343374	128343574	-	1	NA	NA	NA	-15156	NM_001081078	226413	Mm.26930	NM_001081078	ENSMUSG00000026354	Lct	Gm100|LAC|LPH|Lphl	lactase	protein-coding	0.025000	0.487562	
mm_96782.1	chr11	69940971	69941171	+	1	NA	NA	NA	4743	NM_001347634	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.015000	0.537313	
mm_60493.1	chr7	44478609	44478809	+	1	NA	NA	NA	-5808	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.010000	0.447761	
mm_6035.1	chr1	59592115	59592315	-	1	NA	NA	NA	75951	NM_001013771	381260	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0.010000	0.562189	
mm_74905.1	chr8	25203767	25203967	-	1	NA	NA	NA	-2325	NM_177089	320165	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.005000	0.492537	
mm_167854.1	chrX	9862007	9862207	+	1	NA	NA	NA	12404	NM_029229	385317	Mm.108656	NM_029229	ENSMUSG00000048994	H2al3	4930557A04Rik	H2A histone family member L3	protein-coding	0.010000	0.417910	
mm_107025.1	chr12	12942468	12942668	+	1	NA	NA	NA	-732	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.095000	0.606965	
mm_74393.1	chr8	3176837	3177037	-	1	NA	NA	NA	102680	NM_010568	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.000000	0.318408	
mm_42642.1	chr5	118561063	118561263	+	1	NA	NA	NA	444	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.065000	0.512438	
mm_150395.1	chr19	36409816	36410016	+	1	NA	NA	NA	30849	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.185000	0.805970	
mm_167724.1	chr9	101074320	101074520	-	1	NA	NA	NA	-342	NM_001100451	77853	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	male-specific lethal 2 homolog (Drosophila)	protein-coding	0.150000	0.776119	
mm_138254.1	chr17	34590357	34590557	+	1	NA	NA	NA	651	NM_134116	106512	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.020000	0.582090	
mm_19067.1	chr2	77703159	77703359	-	1	NA	NA	NA	13	NM_001113399	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.045000	0.512438	
mm_72803.1	chr8	87472714	87472914	+	1	NA	NA	NA	2	NR_033430	100040294	Mm.213632	NR_033430	ENSMUSG00000097248	Gm2694	C230036H16Rik|linc1582	predicted gene 2694	ncRNA	0.150000	0.741294	
mm_85114.1	chr9	95407158	95407358	-	1	NA	NA	NA	12	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.140000	0.766169	
mm_22561.1	chr3	9942836	9943036	+	1	NA	NA	NA	-69649	NM_001272097	16592	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0.005000	0.462687	
mm_27634.1	chr3	61365713	61365913	-	1	NA	NA	NA	1306	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.035000	0.507463	-85(GGCTATTTAAAC,-,0.00),-83(CTATTTAAACGG,+,0.00)
mm_106615.1	chr11	120817086	120817286	-	1	NA	NA	NA	7361	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.010000	0.537313	
mm_67310.1	chr7	79465920	79466120	-	1	NA	NA	NA	253	NM_017462	18975	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	0.145000	0.796020	
mm_157261.1	chrX	19161849	19162049	-	1	NA	NA	NA	-14978	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.005000	0.288557	
mm_41679.1	chr5	99978502	99978702	+	1	NA	NA	NA	336	NM_001077266	11991	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.175000	0.756219	
mm_133666.1	chr16	92058221	92058421	+	1	NA	NA	NA	-1	NM_017391	53881	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0.150000	0.766169	-32(GCCTTTAAACCC,+,0.00)
mm_26247.1	chr3	141531769	141531969	+	1	NA	NA	NA	66305	NM_001293561	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.000000	0.338308	64(TCTTAAATAGGC,+,0.00)
mm_26864.1	chr3	16006232	16006432	-	1	NA	NA	NA	0	NM_001081687	381484	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0.005000	0.462687	
mm_32298.1	chr4	103119341	103119541	+	1	NA	NA	NA	51	NM_001039081	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.165000	0.786070	
mm_21133.1	chr2	154207064	154207264	-	1	NA	NA	NA	6784	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.020000	0.517413	
mm_165163.1	chr2	25429291	25429491	+	1	NA	NA	NA	717	NM_007379	11305	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	0.020000	0.567164	
mm_171251.1	chr3	7910495	7910695	+	1	NA	NA	NA	44292	NR_040587	75476	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	0.045000	0.601990	
mm_125481.1	chr15	54600634	54600834	+	1	NA	NA	NA	29368	NM_178920	105853	Mm.410994	NM_178920	ENSMUSG00000024479	Mal2	AI461653	mal, T cell differentiation protein 2	protein-coding	0.015000	0.407960	
mm_107441.1	chr12	36314124	36314324	+	1	NA	NA	NA	55	NM_025312	66042	Mm.43375	NM_025312	ENSMUSG00000036169	Sostdc1	0610006G05Rik|Sostl|USAG-1|Wise|ectodin	sclerostin domain containing 1	protein-coding	0.015000	0.507463	-33(GGCTATATAAAG,-,0.00),-31(CTATATAAAGGG,+,0.00),-31(CTATATAAAGGG,-,0.00)
mm_138633.1	chr17	35861168	35861368	+	1	NA	NA	NA	-50	NM_134122	106582	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding	0.095000	0.686567	
mm_4628.1	chr1	179549566	179549766	+	1	NA	NA	NA	3137	NM_146105	226744	Mm.87662	NM_146105	ENSMUSG00000038949	Cnst	9630058J23Rik	consortin, connexin sorting protein	protein-coding	0.010000	0.477612	
mm_118931.1	chr14	27091674	27091874	+	1	NA	NA	NA	-52219	NM_001289686	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.000000	0.303483	
mm_31771.1	chr4	63554094	63554294	+	1	NA	NA	NA	-6166	NM_144905	230279	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.005000	0.373134	
mm_54263.1	chr6	28397994	28398194	-	1	NA	NA	NA	23630	NM_028900	74375	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	0.045000	0.527363	
mm_89635.1	chr10	96616907	96617107	+	1	NA	NA	NA	6	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.105000	0.676617	-35(CCCTATAAAATG,-,0.00)
mm_153052.1	chr19	32103030	32103230	-	1	NA	NA	NA	10	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.035000	0.537313	
mm_89485.1	chr10	93641093	93641293	+	1	NA	NA	NA	144	NM_021320	57764	Mm.483868	NM_021320	ENSMUSG00000020019	Ntn4	-	netrin 4	protein-coding	0.140000	0.776119	
mm_63094.1	chr7	122366447	122366647	+	1	NA	NA	NA	77422	NM_008855	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.000000	0.522388	
mm_15301.1	chr2	155386022	155386222	+	1	NA	NA	NA	4266	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.025000	0.606965	
mm_132293.1	chr16	33380709	33380909	+	1	NA	NA	NA	34	NM_011749	22661	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0.105000	0.691542	
mm_5168.1	chr1	10180851	10181051	-	1	NA	NA	NA	51719	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.010000	0.308458	-2(CCATTTATAACG,+,0.00)
mm_113192.1	chr13	24943071	24943271	+	1	NA	NA	NA	19	NM_008156	14756	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0.030000	0.487562	-55(CACCATAAAAGC,-,0.00)
mm_32432.1	chr4	107200258	107200458	+	1	NA	NA	NA	-8822	NM_001081272	546840	Mm.331755	NM_001081272	ENSMUSG00000070877	Ldlrad1	OTTMUSG00000008594	low density lipoprotein receptor class A domain containing 1	protein-coding	0.010000	0.457711	
mm_46847.1	chr5	113596352	113596552	-	1	NA	NA	NA	46032	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.025000	0.601990	
mm_108327.1	chr12	79863154	79863354	+	1	NA	NA	NA	61479	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.005000	0.432836	
mm_71938.1	chr8	70329793	70329993	+	1	NA	NA	NA	128	NM_008107	14559	Mm.258280	NM_008107	ENSMUSG00000087408	Gdf1	AI385651|Gdf-1	growth differentiation factor 1	protein-coding	0.035000	0.631841	
mm_131363.1	chr16	13780627	13780827	+	1	NA	NA	NA	28	NM_001039521	106298	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	0.125000	0.696517	
mm_63263.1	chr7	126700564	126700764	+	1	NA	NA	NA	3556	NM_001301374	12721	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.020000	0.502488	
mm_132606.1	chr16	38562781	38562981	+	1	NA	NA	NA	67	NM_026407	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.080000	0.631841	
mm_37053.1	chr4	116018026	116018226	-	1	NA	NA	NA	-224	NM_010173	14073	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	0.015000	0.512438	
mm_92368.1	chr10	76026928	76027128	-	1	NA	NA	NA	-5584	NM_177475	64453	Mm.80609	NM_177475	ENSMUSG00000049764	Zfp280b	D10Jhu82e|Suhw2	zinc finger protein 280B	protein-coding	0.020000	0.368159	
mm_137604.1	chr17	28221647	28221847	+	1	NA	NA	NA	-11007	NM_011145	19015	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.010000	0.442786	
mm_11695.1	chr2	35736226	35736426	+	1	NA	NA	NA	39594	NM_001290639	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.005000	0.472637	-99(CCATTTATATGC,+,0.00)
mm_48460.1	chr5	140811985	140812185	-	1	NA	NA	NA	18346	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.005000	0.442786	
mm_4381.1	chr1	172165428	172165628	+	1	NA	NA	NA	17513	NM_153555	98193	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	0.010000	0.412935	
mm_141096.1	chr17	26004712	26004912	-	1	NA	NA	NA	17048	NM_153140	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.030000	0.611940	
mm_13467.1	chr2	105675611	105675811	+	1	NA	NA	NA	-33	NM_001244200	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.020000	0.512438	
mm_123741.1	chr14	70190672	70190872	-	1	NA	NA	NA	1474	NM_001271409	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.005000	0.527363	
mm_59319.1	chr7	25301273	25301473	+	1	NA	NA	NA	14	NM_001081294	623131	Mm.172160	NM_001081294	ENSMUSG00000058741	Prr19	EG623131	proline rich 19	protein-coding	0.070000	0.626866	
mm_35118.1	chr4	10998550	10998750	-	1	NA	NA	NA	8969	NM_175175	71801	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.005000	0.353234	
mm_29291.1	chr3	107760107	107760307	-	1	NA	NA	NA	262	NM_001113530	12977	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0.095000	0.666667	-68(CCGCTTAAAAGG,-,0.00),-66(GCTTAAAAGGCT,+,0.00)
mm_33303.1	chr4	129010662	129010862	+	1	NA	NA	NA	17538	NM_001033966	11637	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.005000	0.373134	
mm_169102.1	chr13	44478897	44479097	-	1	NA	NA	NA	39270	NR_045489	69491	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.035000	0.497512	-27(CTTTAAATACCC,+,0.00)
mm_129831.1	chr15	83148940	83149140	-	1	NA	NA	NA	296	NM_178627	73826	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0.130000	0.805970	
mm_162116.1	chrX	53797606	53797806	-	1	NA	NA	NA	0	NM_001291747	22441	Mm.379041	NM_011725	ENSMUSG00000054626	Xlr	-	X-linked lymphocyte-regulated	protein-coding	0.035000	0.522388	
mm_35227.1	chr4	19695182	19695382	-	1	NA	NA	NA	13722	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.005000	0.363184	
mm_76449.1	chr8	85080600	85080800	-	1	NA	NA	NA	46	NM_026399	67836	Mm.334680	NM_026399	ENSMUSG00000005150	Wdr83	1500041N16Rik|Morg1	WD repeat domain containing 83	protein-coding	0.035000	0.442786	
mm_79903.1	chr9	65400774	65400974	+	1	NA	NA	NA	2386	NM_001033158	70784	Mm.35827	NM_001033158	ENSMUSG00000041696	Rasl12	4631404I11Rik	RAS-like, family 12	protein-coding	0.015000	0.517413	
mm_76260.1	chr8	83748645	83748845	-	1	NA	NA	NA	-7434	NM_001163031	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.010000	0.507463	
mm_151384.1	chr19	56319620	56319820	+	1	NA	NA	NA	31808	NM_146101	226243	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0.010000	0.547264	
mm_150017.1	chr19	29368956	29369156	+	1	NA	NA	NA	1618	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.010000	0.462687	
mm_84534.1	chr9	67208258	67208458	-	1	NA	NA	NA	28368	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	0.015000	0.547264	
mm_32531.1	chr4	108942252	108942452	+	1	NA	NA	NA	29725	NR_040664	77173	Mm.402545	NR_040664	ENSMUSG00000086483	8030443G20Rik	-	RIKEN cDNA 8030443G20 gene	ncRNA	0.010000	0.472637	
mm_27766.1	chr3	70807157	70807357	-	1	NA	NA	NA	34	NR_040556	625901	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA	0.015000	0.407960	
mm_104749.1	chr11	98463383	98463583	-	1	NA	NA	NA	16649	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.000000	0.437811	
mm_68046.1	chr7	101521351	101521551	-	1	NA	NA	NA	34351	NM_007490	11871	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0.015000	0.437811	
mm_160130.1	chr7	29213924	29214124	-	1	NA	NA	NA	9	NM_001164658	320225	Mm.349382	NM_001039721	ENSMUSG00000049676	Catsperg1	A230107C01Rik|Catsperg	catsper channel auxiliary subunit gamma 1	protein-coding	0.055000	0.562189	
mm_104236.1	chr11	88717715	88717915	-	1	NA	NA	NA	414	NM_054043	76626	Mm.400451	NM_054043	ENSMUSG00000069769	Msi2	1700105C15Rik|AI451722|AI563628|AW489193|Msi2h	musashi RNA-binding protein 2	protein-coding	0.065000	0.582090	
mm_103640.1	chr11	78963244	78963444	-	1	NA	NA	NA	21580	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.010000	0.522388	
mm_119672.1	chr14	52622407	52622607	+	1	NA	NA	NA	-126812	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.000000	0.378109	
mm_125211.1	chr15	34082127	34082327	+	1	NA	NA	NA	-492	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.055000	0.452736	-89(TCCTATTAAGGC,-,0.00)
mm_60115.1	chr7	35586203	35586403	+	1	NA	NA	NA	56	NM_178263	245886	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding	0.050000	0.592040	
mm_166813.1	chr7	16257954	16258154	+	1	NA	NA	NA	1284	NM_001173550	12273	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	0.030000	0.537313	
mm_86921.1	chr10	23851443	23851643	+	1	NA	NA	NA	81	NM_011979	26464	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	0.015000	0.412935	
mm_77494.1	chr8	122576761	122576961	-	1	NA	NA	NA	46	NM_009698	11821	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	0.100000	0.646766	
mm_148371.1	chr18	88927364	88927564	-	1	NA	NA	NA	-33257	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.000000	0.512438	
mm_27525.1	chr3	57301904	57302104	-	1	NA	NA	NA	-85	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	0.005000	0.462687	20(TGCTTTATGAGG,-,0.00)
mm_113220.1	chr13	27057506	27057706	+	1	NA	NA	NA	36	NM_011164	19109	Mm.1270	NM_011164	ENSMUSG00000021342	Prl	AV290867|Gha1|Prl1a1	prolactin	protein-coding	0.000000	0.442786	-63(GTTTATAAAGCC,+,0.00)
mm_31813.1	chr4	66827611	66827811	+	1	NA	NA	NA	160	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.025000	0.522388	
mm_125725.1	chr15	73149760	73149960	+	1	NA	NA	NA	35087	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.025000	0.557214	
mm_49286.1	chr6	17665960	17666160	+	1	NA	NA	NA	-27934	NM_001289624	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.010000	0.333333	
mm_145598.1	chr18	61045073	61045273	+	1	NA	NA	NA	23	NM_008809	18596	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.015000	0.592040	
mm_117115.1	chr13	60602490	60602690	-	1	NA	NA	NA	379	NM_134062	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.075000	0.606965	
mm_161932.1	chr18	82406660	82406860	-	1	NA	NA	NA	17	NM_008082	14427	Mm.6219	NM_008082	ENSMUSG00000024553	Galr1	Galnr1	galanin receptor 1	protein-coding	0.050000	0.611940	
mm_98394.1	chr11	94281748	94281948	+	1	NA	NA	NA	-39269	NM_181819	278507	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	0.015000	0.472637	
mm_14995.1	chr2	152345532	152345732	+	1	NA	NA	NA	-37	NR_033505	791417	Mm.451219	NR_033505	ENSMUSG00000068062	Gm14164	OTTMUSG00000015846	predicted gene 14164	ncRNA	0.020000	0.562189	
mm_33618.1	chr4	132638973	132639173	+	1	NA	NA	NA	27	NM_010166	14050	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0.095000	0.631841	
mm_156723.1	chrX	159840368	159840568	+	1	NA	NA	NA	0	NM_001135728	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.020000	0.527363	
mm_160800.1	chr11	5100039	5100239	+	1	NA	NA	NA	-26	NM_001290493	279766	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0.045000	0.592040	
mm_61583.1	chr7	79869285	79869485	+	1	NA	NA	NA	-27033	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.005000	0.477612	
mm_15349.1	chr2	156172857	156173057	+	1	NA	NA	NA	6623	NM_001291115	170791	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.045000	0.422886	
mm_67451.1	chr7	80398786	80398986	-	1	NA	NA	NA	3926	NM_011046	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.025000	0.651741	
mm_20811.1	chr2	144474334	144474534	-	1	NA	NA	NA	9258	NR_038065	171588	Mm.450554	NR_038065	ENSMUSG00000083674	Gm38402	-	zinc finger protein pseudogene	pseudo	0.015000	0.363184	
mm_115081.1	chr13	102688312	102688512	+	1	NA	NA	NA	-5146	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.000000	0.467662	
mm_32459.1	chr4	107381024	107381224	+	1	NA	NA	NA	13340	NM_028355	72787	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0.030000	0.567164	
mm_47897.1	chr5	134747156	134747356	-	1	NA	NA	NA	67	NM_007925	13717	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	0.055000	0.641791	
mm_121187.1	chr14	103049505	103049705	+	1	NA	NA	NA	2593	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.015000	0.492537	
mm_136921.1	chr17	13846007	13846207	+	1	NA	NA	NA	-84713	NM_022311	21646	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0.010000	0.437811	
mm_75723.1	chr8	69084752	69084952	-	1	NA	NA	NA	-3884	NM_007509	11966	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0.000000	0.328358	-80(TTTTTTAAAGTC,+,0.00)
mm_161811.1	chr17	63911114	63911314	+	1	NA	NA	NA	-26758	NM_008000	14158	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.010000	0.407960	
mm_126811.1	chr15	87654911	87655111	+	1	NA	NA	NA	29781	NM_134096	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.010000	0.512438	
mm_103836.1	chr11	83020677	83020877	-	1	NA	NA	NA	33	NM_181545	276950	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0.020000	0.507463	15(GCTTTTCTGGAC,+,0.00)
mm_147373.1	chr18	43477683	43477883	-	1	NA	NA	NA	-39497	NM_001291455	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.110000	0.671642	
mm_27477.1	chr3	53557464	53557664	-	1	NA	NA	NA	68771	NM_153156	229277	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	0.020000	0.477612	
mm_18730.1	chr2	72979203	72979403	-	1	NA	NA	NA	-22	NM_001098425	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.155000	0.776119	
mm_145534.1	chr18	60804912	60805112	+	1	NA	NA	NA	1163	NM_010545	16149	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	0.010000	0.467662	
mm_144995.1	chr18	38296874	38297074	+	1	NA	NA	NA	169	NM_001164621	56736	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	0.120000	0.741294	
mm_77606.1	chr8	123893144	123893344	-	1	NA	NA	NA	1531	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.045000	0.577114	
mm_7324.1	chr1	100252410	100252610	-	1	NA	NA	NA	479745	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0.005000	0.462687	
mm_82796.1	chr9	29412192	29412392	-	1	NA	NA	NA	550837	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.065000	0.582090	
mm_8641.1	chr1	156429378	156429578	-	1	NA	NA	NA	-8563	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.015000	0.457711	-45(GGCTTTAAAAAT,-,0.00),-44(GCTTTAAAAATC,+,0.00),-3(TCTTTTATAATC,+,0.00)
mm_22736.1	chr3	19707318	19707518	+	1	NA	NA	NA	-12022	NM_205769	12918	Mm.290689	NM_205769	ENSMUSG00000049796	Crh	CRF|Gm1347	corticotropin releasing hormone	protein-coding	0.005000	0.422886	
mm_53083.1	chr6	124996619	124996819	+	1	NA	NA	NA	-1	NM_175696	319352	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.150000	0.751244	
mm_150175.1	chr19	32595636	32595836	+	1	NA	NA	NA	21	NM_001201470	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.100000	0.716418	24(CTTTTTATACCT,+,0.00)
mm_116629.1	chr13	48967951	48968151	-	1	NA	NA	NA	-61	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.185000	0.845771	
mm_154583.1	chrX	7572581	7572781	+	1	NA	NA	NA	-919	NR_029473	78185	Mm.160055	NR_029473	ENSMUSG00000039545	Ppp1r3fos	4930524L23Rik	protein phosphatase 1, regulatory subunit 3F, opposite strand	ncRNA	0.030000	0.532338	
mm_36513.1	chr4	83527666	83527866	-	1	NA	NA	NA	2221	NM_001081012	320226	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	0.015000	0.328358	
mm_138240.1	chr17	34564197	34564397	+	1	NA	NA	NA	2	NM_010929	18132	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	0.020000	0.606965	
mm_117840.1	chr13	98692620	98692820	-	1	NA	NA	NA	2111	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.005000	0.467662	
mm_121618.1	chr14	8297023	8297223	-	1	NA	NA	NA	12653	NM_183187	268709	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0.005000	0.422886	
mm_69704.1	chr7	140082165	140082365	-	1	NA	NA	NA	36	NM_001190386	68566	Mm.44241	NM_026769	ENSMUSG00000025468	Caly	0710001P07Rik|1110004A22Rik|Calcyon|Drd1ip	calcyon neuron-specific vesicular protein	protein-coding	0.035000	0.572139	
mm_16617.1	chr2	5538638	5538838	-	1	NA	NA	NA	137308	NM_001290376	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.005000	0.432836	
mm_76611.1	chr8	91133886	91134086	-	1	NA	NA	NA	41	NM_001302337	14339	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	0.105000	0.731343	
mm_136194.1	chr16	89507641	89507841	-	1	NA	NA	NA	582	NM_027771	71363	Mm.158680	NM_027771	ENSMUSG00000056706	Krtap7-1	5430433J05Rik	keratin associated protein 7-1	protein-coding	0.010000	0.402985	
mm_68422.1	chr7	109752101	109752301	-	1	NA	NA	NA	62	NM_020050	56786	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	0.135000	0.751244	
mm_145648.1	chr18	61127781	61127981	+	1	NA	NA	NA	10413	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.020000	0.552239	
mm_73398.1	chr8	105850767	105850967	+	1	NA	NA	NA	1141	NM_177150	320394	Mm.334775	NM_177150	ENSMUSG00000036672	Cenpt	G630055P03Rik	centromere protein T	protein-coding	0.010000	0.462687	
mm_88861.1	chr10	80930817	80931017	+	1	NA	NA	NA	826	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.055000	0.611940	-33(TCTTATATACAC,+,0.00)
mm_88648.1	chr10	79960054	79960254	+	1	NA	NA	NA	2	NM_175450	216156	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.060000	0.601990	
mm_18299.1	chr2	52998056	52998256	-	1	NA	NA	NA	140288	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.015000	0.477612	
mm_32879.1	chr4	118625424	118625624	+	1	NA	NA	NA	-880	NR_029469	100041290	Mm.472885	NR_029469		D4Ertd617e	-	DNA segment, Chr 4, ERATO Doi 617, expressed	ncRNA	0.020000	0.477612	
mm_111979.1	chr12	110278875	110279075	-	1	NA	NA	NA	-255	NM_172119	107585	Mm.154427	NM_172119	ENSMUSG00000075707	Dio3	-	deiodinase, iodothyronine type III	protein-coding	0.085000	0.716418	
mm_364.1	chr1	33907984	33908184	+	1	NA	NA	NA	-141	NM_001276764	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.165000	0.786070	
mm_19841.1	chr2	112678169	112678369	-	1	NA	NA	NA	118587	NM_001165935	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.015000	0.507463	
mm_127559.1	chr15	102177220	102177420	+	1	NA	NA	NA	11723	NM_144942	246277	Mm.296382	NM_144942	ENSMUSG00000023044	Csad	Csd	cysteine sulfinic acid decarboxylase	protein-coding	0.000000	0.363184	-62(TTCTTTATAAAC,-,0.00)
mm_73672.1	chr8	111435736	111435936	+	1	NA	NA	NA	-14364	NR_105819	102466970		NR_105819	ENSMUSG00000098410	Mir1957b	Gm27725|mmu-mir-1957b	microRNA 1957b	ncRNA	0.025000	0.497512	
mm_55188.1	chr6	52190499	52190699	-	1	NA	NA	NA	1104	NM_008265	15401	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	0.085000	0.562189	
mm_140996.1	chr17	24885805	24886005	-	1	NA	NA	NA	445	NM_011956	26426	Mm.36718	NM_011956	ENSMUSG00000039183	Nubp2	D17Wsu11e	nucleotide binding protein 2	protein-coding	0.045000	0.547264	
mm_88703.1	chr10	80148151	80148351	+	1	NA	NA	NA	-21	NM_001305798	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.075000	0.711443	
mm_114081.1	chr13	54574957	54575157	+	1	NA	NA	NA	44	NM_019968	56795	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0.090000	0.711443	
mm_103017.1	chr11	69734814	69735014	-	1	NA	NA	NA	23719	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.005000	0.547264	
mm_84064.1	chr9	58201209	58201409	-	1	NA	NA	NA	406	NM_001161535	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.020000	0.592040	
mm_160838.1	chr11	49050673	49050873	+	1	NA	NA	NA	40	NM_010999	18356	Mm.24769	NM_010999	ENSMUSG00000040328	Olfr56	IF7|MOR276-1	olfactory receptor 56	protein-coding	0.010000	0.512438	
mm_170674.1	chr2	121449315	121449515	+	1	NA	NA	NA	217	NR_110986	378702	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	0.125000	0.691542	
mm_65385.1	chr7	25091168	25091368	-	1	NA	NA	NA	5907	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.010000	0.532338	
mm_103535.1	chr11	77489579	77489779	-	1	NA	NA	NA	-1	NM_172945	268445	Mm.39296	NM_172945	ENSMUSG00000037907	Ankrd13b	AW124583|B930093C12Rik	ankyrin repeat domain 13b	protein-coding	0.205000	0.885572	
mm_163620.1	chr13	55322069	55322269	+	1	NA	NA	NA	114	NM_025596	66494	Mm.439805	NM_025596	ENSMUSG00000021486	Prelid1	2610524G07Rik|Preli	PRELI domain containing 1	protein-coding	0.095000	0.681592	
mm_56881.1	chr6	119016939	119017139	-	1	NA	NA	NA	91456	NM_001159534	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.015000	0.472637	
mm_63488.1	chr7	127767358	127767558	+	1	NA	NA	NA	-2357	NM_198424	269999	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0.035000	0.592040	
mm_52396.1	chr6	113307095	113307295	+	1	NA	NA	NA	58	NM_001282126	78783	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.120000	0.686567	
mm_109243.1	chr12	109452685	109452885	+	1	NA	NA	NA	-38	NR_033813	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.035000	0.621891	
mm_97636.1	chr11	78973660	78973860	+	1	NA	NA	NA	11164	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.015000	0.487562	
mm_143319.1	chr17	66266815	66267015	-	1	NA	NA	NA	143395	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.025000	0.393035	-98(GGCTATAAAGAG,-,0.00),-37(GCTTAAATATGC,+,0.00)
mm_166209.1	chr5	48187943	48188143	-	1	NA	NA	NA	-35899	NR_029798	723822		NR_029798	ENSMUSG00000065603	Mir218-1	Mirn218-1|mir-218-1	microRNA 218-1	ncRNA	0.005000	0.442786	
mm_12727.1	chr2	78868641	78868841	+	1	NA	NA	NA	-306	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.165000	0.796020	
mm_81933.1	chr9	120179920	120180120	+	1	NA	NA	NA	30278	NM_001039364	17433	Mm.486167	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.015000	0.398010	
mm_154473.1	chrM	3789	3989	-	1	NA	NA	NA	NA	NA									0.025000	0.407960	
mm_121226.1	chr14	103055449	103055649	+	1	NA	NA	NA	8537	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.025000	0.422886	
mm_121800.1	chr14	20143601	20143801	-	1	NA	NA	NA	38081	NM_021542	16529	Mm.68998	NM_021542	ENSMUSG00000023243	Kcnk5	KCNK5b|TASK-2	potassium channel, subfamily K, member 5	protein-coding	0.010000	0.537313	
mm_5453.1	chr1	36269444	36269644	-	1	NA	NA	NA	3881	NM_153408	214854	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.115000	0.676617	
mm_129921.1	chr15	84239834	84240034	-	1	NA	NA	NA	7891	NM_133167	170736	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.020000	0.522388	
mm_168046.1	chrY	90811531	90811731	+	1	NA	NA	NA	26189	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.015000	0.477612	
mm_99490.1	chr11	102761492	102761692	+	1	NA	NA	NA	157	NM_001110778	11488	Mm.89854	NM_009613	ENSMUSG00000020926	Adam11	AW060611|Mdc	a disintegrin and metallopeptidase domain 11	protein-coding	0.150000	0.766169	
mm_73220.1	chr8	99416492	99416692	+	1	NA	NA	NA	-82	NR_132435	234624	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	0.075000	0.636816	
mm_57242.1	chr6	123283045	123283245	-	1	NA	NA	NA	6726	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.005000	0.398010	-53(CTGTATAAAGAG,-,0.00)
mm_54566.1	chr6	37870345	37870545	-	1	NA	NA	NA	-366	NM_001272064	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.050000	0.532338	
mm_48479.1	chr5	141000542	141000742	-	1	NA	NA	NA	-46	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.015000	0.477612	
mm_140418.1	chr17	87672452	87672652	+	1	NA	NA	NA	-5	NM_008628	17685	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	0.105000	0.686567	
mm_126400.1	chr15	80234009	80234209	+	1	NA	NA	NA	29	NM_178719	239555	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.125000	0.706468	
mm_121211.1	chr14	103053962	103054162	+	1	NA	NA	NA	7050	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.015000	0.437811	
mm_56205.1	chr6	88903811	88904011	-	1	NA	NA	NA	1660	NM_011906	24100	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.010000	0.542289	
mm_161008.1	chr11	118129023	118129223	-	1	NA	NA	NA	96	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.020000	0.507463	
mm_36613.1	chr4	89282085	89282285	-	1	NA	NA	NA	7	NM_001040654	12578	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin-dependent kinase inhibitor 2A	protein-coding	0.050000	0.651741	
mm_28296.1	chr3	89101778	89101978	-	1	NA	NA	NA	89	NM_134469	110196	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	0.055000	0.567164	
mm_98259.1	chr11	88851547	88851747	+	1	NA	NA	NA	43	NR_126433	75285	Mm.402023	NR_126433	ENSMUSG00000092399	4930556N13Rik	-	RIKEN cDNA 4930556N13 gene	ncRNA	0.005000	0.542289	
mm_55908.1	chr6	83710758	83710958	-	1	NA	NA	NA	-52	NR_075094	574519	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	0.030000	0.547264	
mm_134854.1	chr16	28307073	28307273	-	1	NA	NA	NA	138902	NM_183064	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.000000	0.338308	-47(GCTTTTATATTG,+,0.00)
mm_72174.1	chr8	72318787	72318987	+	1	NA	NA	NA	-175	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.125000	0.696517	42(GCTTATATACCG,+,0.00)
mm_171912.1	chr5	53555743	53555943	+	1	NA	NA	NA	64	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.020000	0.457711	
mm_4546.1	chr1	177257349	177257549	+	1	NA	NA	NA	-8682	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.060000	0.582090	
mm_155241.1	chrX	57213316	57213516	+	1	NA	NA	NA	1273	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.000000	0.273632	
mm_31209.1	chr4	43937261	43937461	+	1	NA	NA	NA	-20341	NM_027450	384009	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0.015000	0.497512	
mm_135663.1	chr16	52407546	52407746	-	1	NA	NA	NA	45435	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.303483	
mm_71438.1	chr8	46511442	46511642	+	1	NA	NA	NA	20576	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.025000	0.507463	
mm_161017.1	chr11	120361345	120361545	+	1	NA	NA	NA	-89	NM_172802	238021	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.035000	0.601990	
mm_51451.1	chr6	80517154	80517354	+	1	NA	NA	NA	497611	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.010000	0.283582	
mm_98412.1	chr11	94507344	94507544	+	1	NA	NA	NA	-7470	NM_027984	71889	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	0.025000	0.512438	
mm_65926.1	chr7	30263857	30264057	-	1	NA	NA	NA	-16137	NR_144498	108167416	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	0.005000	0.383085	88(TACTATATAAGA,-,0.00)
mm_46393.1	chr5	104022059	104022259	-	1	NA	NA	NA	-363	NM_053262	114664	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0.020000	0.527363	
mm_18486.1	chr2	62601394	62601594	-	1	NA	NA	NA	-27473	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.035000	0.452736	
mm_30372.1	chr3	152193717	152193917	-	1	NA	NA	NA	28	NM_025926	67035	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0.065000	0.542289	
mm_49850.1	chr6	38376636	38376836	+	1	NA	NA	NA	-4788	NM_153600	264134	Mm.253446	NM_153600	ENSMUSG00000056832	Ttc26	9330141E21Rik|9430097H08Rik|hop|hpy	tetratricopeptide repeat domain 26	protein-coding	0.030000	0.552239	
mm_154338.1	chrM	4192	4392	+	1	NA	NA	NA	NA	NA									0.010000	0.363184	
mm_172794.1	chr9	110945952	110946152	-	1	NA	NA	NA	106	NM_011562	21667	Mm.5090	NM_011562	ENSMUSG00000032494	Tdgf1	CR1|cripto	teratocarcinoma-derived growth factor 1	protein-coding	0.025000	0.467662	-77(TTCTTTTAAGGG,-,0.00),-76(TCTTTTAAGGGA,+,0.00),-75(CTTTTAAGGGAG,+,0.00)
mm_129828.1	chr15	83127902	83128102	-	1	NA	NA	NA	-5201	NM_029101	74778	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.035000	0.577114	
mm_63292.1	chr7	126799517	126799717	+	1	NA	NA	NA	-363	NM_007438	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.055000	0.606965	
mm_113339.1	chr13	31785016	31785216	+	1	NA	NA	NA	-21530	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.020000	0.457711	
mm_112956.1	chr13	21179821	21180021	+	1	NA	NA	NA	-10	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.045000	0.572139	-98(CCTTTTCTAGCG,+,0.00),4(TACTTTTAAAGG,-,0.00),5(ACTTTTAAAGGA,+,0.00),6(CTTTTAAAGGAG,+,0.00)
mm_83591.1	chr9	48480395	48480595	-	1	NA	NA	NA	116	NM_024233	104444	Mm.21911	NM_024233	ENSMUSG00000032026	Rexo2	1810038D15Rik|AW107347|Rex2|Sfn|Smfn	RNA exonuclease 2	protein-coding	0.100000	0.726368	
mm_144972.1	chr18	37874449	37874649	+	1	NA	NA	NA	-19889	NR_105945	102465592		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.020000	0.432836	
mm_163409.1	chr12	76909417	76909617	+	1	NA	NA	NA	52731	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.015000	0.527363	
mm_4165.1	chr1	171032756	171032956	+	1	NA	NA	NA	13930	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.030000	0.582090	-33(CACTATAAAAGA,-,0.00)
mm_8429.1	chr1	152552496	152552696	-	1	NA	NA	NA	72621	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.030000	0.452736	
mm_43592.1	chr5	137758158	137758358	+	1	NA	NA	NA	12289	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.020000	0.587065	
mm_21246.1	chr2	156176479	156176679	-	1	NA	NA	NA	3001	NM_001291115	170791	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.005000	0.313433	
mm_20142.1	chr2	121450104	121450304	-	1	NA	NA	NA	1006	NR_110986	378702	Mm.262252	NM_011354	ENSMUSG00000074884	Serf2	C80083|Msmac1l|m4F5rel	small EDRK-rich factor 2	protein-coding	0.025000	0.567164	
mm_7682.1	chr1	128589276	128589476	-	1	NA	NA	NA	2923	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.030000	0.537313	
mm_111958.1	chr12	109560767	109560967	-	1	NA	NA	NA	-2825	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.020000	0.412935	
mm_23540.1	chr3	61363801	61364001	+	1	NA	NA	NA	-606	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.040000	0.572139	
mm_21123.1	chr2	153870967	153871167	-	1	NA	NA	NA	17	NM_001305048	76407	Mm.33629	NM_029599	ENSMUSG00000027480	Sun5	1700021O15Rik|SPAG4L-2|SRG4|Spag4l	Sad1 and UNC84 domain containing 5	protein-coding	0.020000	0.517413	49(CCCTTTATAAAA,-,0.00),51(CTTTATAAAAGG,-,0.00)
mm_20861.1	chr2	148438166	148438366	-	1	NA	NA	NA	5269	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.000000	0.402985	
mm_7997.1	chr1	134344593	134344793	-	1	NA	NA	NA	-11765	NM_001144855	68507	Mm.295105	NM_001144855	ENSMUSG00000026458	Ppfia4	100042382|1110008G13Rik|AI448359|AI852265|C81506|Gm3812	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	protein-coding	0.090000	0.716418	
mm_77706.1	chr8	126591560	126591760	-	1	NA	NA	NA	1776	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.020000	0.577114	
mm_14692.1	chr2	140965837	140966037	+	1	NA	NA	NA	-294461	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.010000	0.398010	
mm_12418.1	chr2	70561922	70562122	+	1	NA	NA	NA	-107	NM_001312900	14415	Mm.272120	NM_008077	ENSMUSG00000070880	Gad1	EP10|Gad-1	glutamate decarboxylase 1	protein-coding	0.075000	0.616915	
mm_86295.1	chr9	122294249	122294449	-	1	NA	NA	NA	74	NM_001271873	102566	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	0.130000	0.771144	
mm_43655.1	chr5	138610604	138610804	+	1	NA	NA	NA	9039	NM_001163797	24135	Mm.27575	NM_013844	ENSMUSG00000058291	Zfp68	KRAB3|KRAZ2|Zfp70|mszf22|mszf49	zinc finger protein 68	protein-coding	0.000000	0.378109	-14(CCATATAGGGGC,+,0.00)
mm_74444.1	chr8	4040399	4040599	-	1	NA	NA	NA	65265	NM_026956	69142	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	0.015000	0.353234	
mm_90371.1	chr10	127171939	127172139	+	1	NA	NA	NA	6208	NM_001244618	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.015000	0.572139	
mm_103935.1	chr11	83648987	83649187	-	1	NA	NA	NA	291	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.000000	0.417910	39(CCTTTTATAGGT,+,0.00)
mm_94272.1	chr11	3655603	3655803	+	1	NA	NA	NA	-2997	NM_198162	74522	Mm.139127	NM_198162	ENSMUSG00000034543	Morc2a	8430403M08Rik|Zcwcc1	microrchidia 2A	protein-coding	0.010000	0.442786	
mm_3998.1	chr1	164503218	164503418	+	1	NA	NA	NA	-44963	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.010000	0.482587	
mm_171730.1	chr4	92903368	92903568	-	1	NA	NA	NA	432043	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.005000	0.542289	-20(CCTTTTATAAGT,+,0.00)
mm_110076.1	chr12	23010124	23010324	-	1	NA	NA	NA	19	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA	0.110000	0.746269	
mm_136196.1	chr16	89571049	89571249	-	1	NA	NA	NA	34	NM_001113406	16693	Mm.310906	NM_001113406	ENSMUSG00000091212	Krtap11-1	AA162070|AA589467|AV018433|Hacl1|KAP11.1|PRED29	keratin associated protein 11-1	protein-coding	0.010000	0.517413	
mm_20338.1	chr2	127633509	127633709	-	1	NA	NA	NA	23086	NM_010762	17153	Mm.39040	NM_010762	ENSMUSG00000027375	Mal	Mpv17|Vip17	myelin and lymphocyte protein, T cell differentiation protein	protein-coding	0.000000	0.452736	
mm_102421.1	chr11	59228128	59228328	-	1	NA	NA	NA	39	NM_007476	11840	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	0.140000	0.761194	
mm_6415.1	chr1	73140572	73140772	-	1	NA	NA	NA	116086	NR_038002	69449	Mm.250447	NR_038001	ENSMUSG00000101968	1700027A15Rik	-	RIKEN cDNA 1700027A15 gene	ncRNA	0.005000	0.477612	
mm_44101.1	chr5	149289537	149289737	+	1	NA	NA	NA	24633	NM_009663	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.010000	0.467662	
mm_8249.1	chr1	138619550	138619750	-	1	NA	NA	NA	107	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.135000	0.766169	
mm_103967.1	chr11	84491473	84491673	-	1	NA	NA	NA	21928	NM_019816	56321	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0.005000	0.502488	-50(TCATAAATAGCC,+,0.00)
mm_76809.1	chr8	104437548	104437748	-	1	NA	NA	NA	5399	NM_001013380	234663	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	0.015000	0.492537	
mm_136907.1	chr17	13016492	13016692	+	1	NA	NA	NA	8753	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.015000	0.452736	
mm_144686.1	chr18	34777518	34777718	+	1	NA	NA	NA	610	NM_001081256	277250	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	0.090000	0.711443	
mm_463.1	chr1	36308043	36308243	+	1	NA	NA	NA	410	NM_001172205	214855	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.100000	0.646766	
mm_51484.1	chr6	83051177	83051377	+	1	NA	NA	NA	1566	NR_106007	102465630		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	0.035000	0.497512	
mm_42271.1	chr5	114146345	114146545	+	1	NA	NA	NA	15289	NM_011677	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.010000	0.517413	
mm_118904.1	chr14	26655891	26656091	+	1	NA	NA	NA	13617	NR_106132	102465773		NR_106132	ENSMUSG00000098751	Mir7672	Gm27314|mmu-mir-7672	microRNA 7672	ncRNA	0.005000	0.398010	70(GGTTATTAAAGG,-,0.00)
mm_40211.1	chr5	37047339	37047539	+	1	NA	NA	NA	-3418	NM_178394	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0.010000	0.572139	
mm_37206.1	chr4	117872505	117872705	-	1	NA	NA	NA	-135	NM_001034876	381546	Mm.440118	NM_001034876	ENSMUSG00000078588	Ccdc24	Gm1028	coiled-coil domain containing 24	protein-coding	0.045000	0.616915	
mm_99407.1	chr11	102262126	102262326	+	1	NA	NA	NA	-6597	NM_148953	217217	Mm.216432	NM_148953	ENSMUSG00000034768	Asb16	-	ankyrin repeat and SOCS box-containing 16	protein-coding	0.025000	0.582090	
mm_172492.1	chr7	56805389	56805589	-	1	NA	NA	NA	565718	NM_021879	18431	Mm.137052	NM_021879	ENSMUSG00000030450	Oca2	D7H15S12|D7Icr28RN|D7Nic1|p|p<cas>	oculocutaneous albinism II	protein-coding	0.010000	0.432836	-71(TCTTATATACAG,+,0.00),-28(TTGCATATAAGG,-,0.00),-26(GCATATAAGGCC,+,0.00)
mm_115681.1	chr13	13393443	13393643	-	1	NA	NA	NA	81	NM_031999	83924	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	0.115000	0.701493	
mm_64393.1	chr7	142489214	142489414	+	1	NA	NA	NA	-9522	NM_001347549	21957	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	0.005000	0.492537	
mm_114478.1	chr13	69141103	69141303	+	1	NA	NA	NA	-141662	NM_153534	210044	Mm.390617	NM_153534	ENSMUSG00000021536	Adcy2	mKIAA1060	adenylate cyclase 2	protein-coding	0.010000	0.412935	
mm_141207.1	chr17	27057096	27057296	-	1	NA	NA	NA	-108	NM_080553	16440	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0.105000	0.726368	
mm_120417.1	chr14	65358503	65358703	+	1	NA	NA	NA	-73	NM_199029	380912	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.165000	0.805970	
mm_52712.1	chr6	119481288	119481488	+	1	NA	NA	NA	1720	NM_133940	101358	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.025000	0.502488	
mm_124695.1	chr15	6438898	6439098	+	1	NA	NA	NA	-6335	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.005000	0.383085	
mm_8663.1	chr1	156654404	156654604	-	1	NA	NA	NA	19835	NM_023141	30935	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.000000	0.388060	23(TCTTATAAAGCA,+,0.00)
mm_167544.1	chr9	26791901	26792101	-	1	NA	NA	NA	14416	NM_153803	244757	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0.010000	0.517413	
mm_160773.1	chr10	119454061	119454261	+	1	NA	NA	NA	127	NM_001277293	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding	0.135000	0.771144	
mm_2693.1	chr1	127731265	127731465	+	1	NA	NA	NA	1952	NM_001033041	266645	Mm.25735	NM_001033041	ENSMUSG00000026348	Acmsd	-	amino carboxymuconate semialdehyde decarboxylase	protein-coding	0.005000	0.457711	-47(CCTTATAAAAGT,+,0.00)
mm_48467.1	chr5	140830314	140830514	-	1	NA	NA	NA	17	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.165000	0.825871	
mm_153534.1	chr19	41911665	41911865	-	1	NA	NA	NA	-106	NM_023418	18648	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	0.110000	0.646766	
mm_22224.1	chr2	174428535	174428735	-	1	NA	NA	NA	10404	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.025000	0.502488	
mm_7921.1	chr1	133800910	133801110	-	1	NA	NA	NA	-47263	NM_213616	381290	Mm.188617	NM_213616	ENSMUSG00000026463	Atp2b4	Pmca4	ATPase, Ca++ transporting, plasma membrane 4	protein-coding	0.035000	0.636816	
mm_160141.1	chr7	34285364	34285564	-	1	NA	NA	NA	145	NM_172741	233103	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	0.005000	0.308458	
mm_169790.1	chr16	14067657	14067857	+	1	NA	NA	NA	-80890	NM_001270718	74482	Mm.484026	NM_028968	ENSMUSG00000065968	Ifitm7	4933438K12Rik|Mil4	interferon induced transmembrane protein 7	protein-coding	0.025000	0.482587	
mm_99666.1	chr11	105955913	105956113	+	1	NA	NA	NA	-11866	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.075000	0.641791	
mm_6712.1	chr1	82290808	82291008	-	1	NA	NA	NA	531	NM_010570	16367	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.080000	0.646766	
mm_35758.1	chr4	45826727	45826927	-	1	NA	NA	NA	0	NM_018741	75426	Mm.3919	NM_018741	ENSMUSG00000035551	Igfbpl1	2810011G06Rik|2810453O06Rik|IGFBPL	insulin-like growth factor binding protein-like 1	protein-coding	0.140000	0.771144	
mm_146321.1	chr18	80612391	80612591	+	1	NA	NA	NA	-67945	NR_028424	100039348	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.010000	0.482587	
mm_138823.1	chr17	39847701	39847901	+	1	NA	NA	NA	4804	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.080000	0.557214	
mm_164657.1	chr17	36271706	36271906	-	1	NA	NA	NA	198	NM_024468	79263	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0.075000	0.661692	
mm_168911.1	chr12	55230339	55230539	+	1	NA	NA	NA	-39	NM_001100110	100101806	Mm.471968	NM_001100110	ENSMUSG00000079108	Srp54c	E330029E12Rik	signal recognition particle 54C	protein-coding	0.075000	0.611940	
mm_3885.1	chr1	161070865	161071065	+	1	NA	NA	NA	198	NR_131028	70454	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	0.085000	0.587065	
mm_92657.1	chr10	80412614	80412814	-	1	NA	NA	NA	-5893	NM_025650	66594	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0.040000	0.626866	
mm_93215.1	chr10	94944877	94945077	-	1	NA	NA	NA	-399	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.070000	0.666667	
mm_110924.1	chr12	76369327	76369527	-	1	NA	NA	NA	37	NM_001172104	109929	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0.150000	0.781095	
mm_1428.1	chr1	67176886	67177086	+	1	NA	NA	NA	53959	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.020000	0.532338	
mm_32549.1	chr4	109394070	109394270	+	1	NA	NA	NA	12087	NR_131195	102635290	Mm.427859	NR_131195		Ttc39aos1	Gm12750|OTTMUSG00000008290|lincRNA-EPS	Ttc39a opposite strand RNA 1	ncRNA	0.035000	0.686567	
mm_151766.1	chr19	5272891	5273091	-	1	NA	NA	NA	128	NM_153129	107975	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	0.165000	0.756219	
mm_52604.1	chr6	117173475	117173675	+	1	NA	NA	NA	5040	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.020000	0.517413	
mm_33193.1	chr4	126262275	126262475	+	1	NA	NA	NA	-30	NM_013718	27096	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	0.075000	0.661692	
mm_169970.1	chr17	13862735	13862935	-	1	NA	NA	NA	-85538	NM_001122977	635895	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.030000	0.398010	
mm_119181.1	chr14	32166014	32166214	+	1	NA	NA	NA	325	NM_019744	27057	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.000000	0.432836	-30(GCTTATAGAGTT,+,0.00)
mm_100503.1	chr11	120485246	120485446	+	1	NA	NA	NA	677	NM_027204	56282	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	0.050000	0.572139	
mm_107267.1	chr12	29528438	29528638	+	1	NA	NA	NA	154	NM_008666	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.025000	0.502488	
mm_10907.1	chr2	25346178	25346378	+	1	NA	NA	NA	10054	NM_031843	83768	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0.015000	0.472637	
mm_77079.1	chr8	110502255	110502455	-	1	NA	NA	NA	1	NR_105058	100861869	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.000000	0.427861	
mm_138546.1	chr17	35263664	35263864	+	1	NA	NA	NA	641	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.095000	0.686567	
mm_43770.1	chr5	141116227	141116427	+	1	NA	NA	NA	-115731	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.015000	0.457711	
mm_88602.1	chr10	79805896	79806096	+	1	NA	NA	NA	12424	NM_001161747	18483	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0.040000	0.631841	
mm_65866.1	chr7	29505289	29505489	-	1	NA	NA	NA	71	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.025000	0.621891	
mm_115847.1	chr13	21287342	21287542	-	1	NA	NA	NA	5244	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.020000	0.512438	
mm_114396.1	chr13	63278919	63279119	+	1	NA	NA	NA	18128	NR_045794	100504114	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	0.020000	0.577114	
mm_32897.1	chr4	118986843	118987043	+	1	NA	NA	NA	24976	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.010000	0.487562	
mm_62757.1	chr7	112074564	112074764	+	1	NA	NA	NA	51158	NM_177249	74996	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	0.010000	0.358209	-17(CTCTTTTTAGGG,-,0.00),-15(CTTTTTAGGGCC,+,0.00)
mm_39384.1	chr5	13125498	13125698	+	1	NA	NA	NA	-271186	NM_001243072	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.025000	0.502488	
mm_13449.1	chr2	105224236	105224436	+	1	NA	NA	NA	-6	NM_028747	74088	Mm.46188	NM_028747	ENSMUSG00000055312	Them7	0610012H03Rik	thioesterase superfamily member 7	protein-coding	0.060000	0.636816	
mm_101544.1	chr11	33537304	33537504	-	1	NA	NA	NA	-23658	NM_023146	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.010000	0.432836	-68(CTCCTTAAAAGA,-,0.00)
mm_99101.1	chr11	100052163	100052363	+	1	NA	NA	NA	-1712	NM_010659	16660	Mm.439673	NM_010659	ENSMUSG00000048981	Krt31	Ha1|Kha1|Krt1-1|MKHA-1	keratin 31	protein-coding	0.015000	0.482587	
mm_38054.1	chr4	134004093	134004293	-	1	NA	NA	NA	-3329	NM_026144	67422	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	0.010000	0.472637	
mm_140698.1	chr17	14204143	14204343	-	1	NA	NA	NA	-412	NM_172826	240025	Mm.79993	NM_172826	ENSMUSG00000048826	Dact2	2900084M21Rik|A630024E20|Dpr2|Frd2|dapper2	dishevelled-binding antagonist of beta-catenin 2	protein-coding	0.025000	0.562189	
mm_61585.1	chr7	80010839	80011039	+	1	NA	NA	NA	-13875	NM_001145999	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.005000	0.567164	
mm_28642.1	chr3	95220126	95220326	-	1	NA	NA	NA	-2284	NM_029885	213054	Mm.224820	NM_029885	ENSMUSG00000038766	Gabpb2	1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1	GA repeat binding protein, beta 2	protein-coding	0.030000	0.542289	
mm_53705.1	chr6	143167139	143167339	+	1	NA	NA	NA	9	NM_029250	75320	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0.150000	0.761194	
mm_30292.1	chr3	148989632	148989832	-	1	NA	NA	NA	-35097	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.065000	0.557214	
mm_51390.1	chr6	78370524	78370724	+	1	NA	NA	NA	-261	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.010000	0.398010	
mm_44492.1	chr5	23675869	23676069	-	1	NA	NA	NA	36698	NR_038090	433855	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	0.165000	0.815920	
mm_29460.1	chr3	113574156	113574356	-	1	NA	NA	NA	506	NM_007446	11722	Mm.439727	NM_007446	ENSMUSG00000074264	Amy1	Amy-1|Amy1a|C030014B17Rik	amylase 1, salivary	protein-coding	0.005000	0.368159	
mm_138438.1	chr17	35121446	35121646	+	1	NA	NA	NA	50	NM_001128597	81845	Mm.7405	NM_032460	ENSMUSG00000092417	Gpank1	Bat-4|Bat4|D17H6S54E|G5	G patch domain and ankyrin repeats 1	protein-coding	0.075000	0.626866	
mm_113201.1	chr13	24964182	24964382	+	1	NA	NA	NA	21130	NM_008156	14756	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0.000000	0.437811	
mm_154026.1	chr19	53423253	53423453	-	1	NA	NA	NA	-32780	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	0.020000	0.562189	
mm_98912.1	chr11	98202718	98202918	+	1	NA	NA	NA	-487	NM_001109628	69131	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.070000	0.636816	
mm_31661.1	chr4	59944387	59944587	+	1	NA	NA	NA	16178	NM_008648	17843	Mm.457982	NM_008648	ENSMUSG00000041333	Mup4	Mup-4|Mup1	major urinary protein 4	protein-coding	0.015000	0.502488	
mm_145863.1	chr18	65458274	65458474	+	1	NA	NA	NA	27377	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.343284	
mm_120938.1	chr14	76515887	76516087	+	1	NA	NA	NA	4868	NR_045660	75789	Mm.159571	NR_045660	ENSMUSG00000097172	4930444M15Rik	-	RIKEN cDNA 4930444M15 gene	ncRNA	0.025000	0.522388	
mm_83756.1	chr9	51875783	51875983	-	1	NA	NA	NA	2	NR_033560	408028	Mm.393649	NR_033560	ENSMUSG00000074354	Arhgap20os	9230115E21Rik	Rho GTPase activating protein 20, opposite strand	ncRNA	0.055000	0.592040	-37(GCCCTTATAAAA,-,0.00),-35(CCTTATAAAAGA,+,0.00),-35(CCTTATAAAAGA,-,0.00)
mm_101790.1	chr11	46083702	46083902	-	1	NA	NA	NA	-18468	NR_106177	102465996		NR_106177	ENSMUSG00000098942	Mir8100	Gm27638|mmu-mir-8100	microRNA 8100	ncRNA	0.005000	0.452736	-35(TCTTATAAACCA,+,0.00)
mm_106887.1	chr12	8012046	8012246	+	1	NA	NA	NA	34469	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.432836	
mm_45287.1	chr5	64960938	64961138	-	1	NA	NA	NA	-1004	NM_011604	21899	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0.015000	0.537313	
mm_110750.1	chr12	69986863	69987063	-	1	NA	NA	NA	39	NM_022028	64010	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0.165000	0.796020	
mm_118469.1	chr14	11553507	11553707	+	1	NA	NA	NA	54	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.055000	0.616915	
mm_142893.1	chr17	51833160	51833360	-	1	NA	NA	NA	30	NM_001163632	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.080000	0.691542	
mm_106734.1	chr12	3894789	3894989	+	1	NA	NA	NA	3145	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.005000	0.522388	
mm_119206.1	chr14	32856776	32856976	+	1	NA	NA	NA	120	NM_178791	320736	Mm.187910	NM_178791	ENSMUSG00000050666	Vstm4	E130203B14Rik	V-set and transmembrane domain containing 4	protein-coding	0.145000	0.791045	
mm_56612.1	chr6	112490717	112490917	-	1	NA	NA	NA	-1009	NM_001081147	18430	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding	0.035000	0.611940	
mm_139836.1	chr17	69156721	69156921	+	1	NA	NA	NA	11	NM_013813	13823	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.135000	0.776119	
mm_86990.1	chr10	25498496	25498696	+	1	NA	NA	NA	37676	NM_001195596	100504474	Mm.46323	NM_001195596	ENSMUSG00000096546	Smlr1	2010003K15Rik	small leucine-rich protein 1	protein-coding	0.005000	0.298507	12(TTGTTTAAAAAG,-,0.00)
mm_101714.1	chr11	42179569	42179769	-	1	NA	NA	NA	3261	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding	0.015000	0.472637	
mm_18240.1	chr2	52169836	52170036	-	1	NA	NA	NA	97099	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.020000	0.452736	
mm_2469.1	chr1	105669234	105669434	+	1	NA	NA	NA	5473	NM_173187	227446	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	0.000000	0.258706	-67(TCTTTTAGAGTT,+,0.00)
mm_152446.1	chr19	10794567	10794767	-	1	NA	NA	NA	35391	NM_001037801	12511	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.020000	0.462687	
mm_86102.1	chr9	115310073	115310273	-	1	NA	NA	NA	248	NM_024222	68292	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0.125000	0.751244	
mm_49203.1	chr6	15394628	15394828	+	1	NA	NA	NA	209222	NM_001286607	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.025000	0.477612	-98(CCTTTTATAGCT,+,0.00)
mm_121466.1	chr14	120897153	120897353	+	1	NA	NA	NA	-13941	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	0.015000	0.537313	
mm_9916.1	chr1	189128039	189128239	-	1	NA	NA	NA	-120299	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.000000	0.487562	-33(GACTATAAAAGG,-,0.00)
mm_19834.1	chr2	112363230	112363430	-	1	NA	NA	NA	4697	NM_026519	68032	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	0.000000	0.412935	77(CCCTTAAAACAG,+,0.00)
mm_148216.1	chr18	80236595	80236795	-	1	NA	NA	NA	10407	NM_001136181	66255	Mm.272341	NM_001136181	ENSMUSG00000078963	Hsbp1l1	1810005K13Rik	heat shock factor binding protein 1-like 1	protein-coding	0.065000	0.616915	
mm_64994.1	chr7	16917621	16917821	-	1	NA	NA	NA	6311	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.020000	0.567164	
mm_167448.1	chr8	122431785	122431985	+	1	NA	NA	NA	1055	NM_001301284	13057	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.025000	0.582090	
mm_56318.1	chr6	92244547	92244747	-	1	NA	NA	NA	3	NM_009426	22044	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	0.075000	0.641791	-34(GCGCATATAAGC,-,0.00)
mm_23094.1	chr3	37063558	37063758	+	1	NA	NA	NA	2	NM_009350	21744	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	0.130000	0.726368	
mm_83457.1	chr9	45249891	45250091	-	1	NA	NA	NA	16716	NR_106054	102466803		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.000000	0.398010	
mm_77781.1	chr9	3022649	3022849	+	1	NA	NA	NA	15994	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.020000	0.368159	
mm_66620.1	chr7	45474704	45474904	-	1	NA	NA	NA	-7906	NM_007527	12028	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.000000	0.328358	
mm_27613.1	chr3	59219906	59220106	-	1	NA	NA	NA	-9124	NM_028808	74191	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.005000	0.437811	
mm_109756.1	chr12	117830782	117830982	+	1	NA	NA	NA	-12979	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.000000	0.422886	
mm_81019.1	chr9	104337759	104337959	+	1	NA	NA	NA	-137	NM_207668	56318	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	0.020000	0.517413	
mm_29123.1	chr3	105053038	105053238	-	1	NA	NA	NA	8	NM_030249	80281	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.060000	0.616915	
mm_30053.1	chr3	136449347	136449547	-	1	NA	NA	NA	-98	NR_040592	70055	Mm.261063	NR_040592	ENSMUSG00000099508	1700030L20Rik	-	RIKEN cDNA 1700030L20 gene	ncRNA	0.010000	0.422886	
mm_102889.1	chr11	69413178	69413378	-	1	NA	NA	NA	397	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.010000	0.522388	
mm_89764.1	chr10	100076196	100076396	+	1	NA	NA	NA	60475	NM_013598	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.015000	0.313433	
mm_115079.1	chr13	102349608	102349808	+	1	NA	NA	NA	-343850	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.000000	0.497512	
mm_153513.1	chr19	41384981	41385181	-	1	NA	NA	NA	-11	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.115000	0.721393	
mm_152099.1	chr19	6910007	6910207	-	1	NA	NA	NA	409	NM_026306	67674	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.075000	0.592040	
mm_5345.1	chr1	24679028	24679228	-	1	NA	NA	NA	210	NM_001310483	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.060000	0.587065	
mm_27341.1	chr3	50414643	50414843	-	1	NA	NA	NA	28870	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.313433	
mm_125157.1	chr15	31103207	31103407	+	1	NA	NA	NA	64181	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.005000	0.472637	
mm_153962.1	chr19	47835861	47836061	-	1	NA	NA	NA	1400	NM_027559	100048534	Mm.29457	NM_027559	ENSMUSG00000044948	Cfap43	4632415N18Rik|4930428C11Rik|4930463G05Rik|AI429486|D19Ertd652e|Wdr96	cilia and flagella associated protein 43	protein-coding	0.010000	0.482587	
mm_107272.1	chr12	29533337	29533537	+	1	NA	NA	NA	-1468	NM_001093776	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.035000	0.611940	
mm_164022.1	chr14	75182387	75182587	-	1	NA	NA	NA	46062	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.010000	0.427861	
mm_172048.1	chr6	128644762	128644962	+	1	NA	NA	NA	-17523	NM_053165	94071	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	0.065000	0.562189	
mm_142871.1	chr17	51815903	51816103	-	1	NA	NA	NA	-3949	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.010000	0.402985	
mm_45191.1	chr5	52154210	52154410	-	1	NA	NA	NA	-18293	NR_105845	102466648		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0.015000	0.393035	
mm_25391.1	chr3	107218518	107218718	+	1	NA	NA	NA	3114	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.020000	0.527363	
mm_16024.1	chr2	167504106	167504306	+	1	NA	NA	NA	-11332	NM_170756	263876	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	0.055000	0.641791	
mm_52104.1	chr6	97876061	97876261	+	1	NA	NA	NA	-53656	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.025000	0.447761	
mm_107868.1	chr12	69907758	69907958	+	1	NA	NA	NA	-14695	NM_201519	399510	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	0.050000	0.611940	
mm_140213.1	chr17	83810556	83810756	+	1	NA	NA	NA	36134	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.010000	0.482587	
mm_159592.1	chr4	125122312	125122512	-	1	NA	NA	NA	5469	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.015000	0.537313	
mm_167916.1	chrX	99542561	99542761	+	1	NA	NA	NA	-71926	NM_008853	18744	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger 1, E3 ubiquitin protein ligase	protein-coding	0.010000	0.467662	
mm_137392.1	chr17	25820066	25820266	+	1	NA	NA	NA	-3461	NM_173741	268933	Mm.95512	NM_173741	ENSMUSG00000025737	Wdr24	BC037651	WD repeat domain 24	protein-coding	0.015000	0.582090	
mm_30220.1	chr3	145032673	145032873	-	1	NA	NA	NA	3	NM_017474	23844	Mm.33483	NM_017474	ENSMUSG00000028255	Clca1	Clca2|Clca3|gob-5|gob5	chloride channel accessory 1	protein-coding	0.000000	0.462687	
mm_74556.1	chr8	10900452	10900652	-	1	NA	NA	NA	630	NR_102285	71624	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0.015000	0.542289	
mm_148369.1	chr18	88894206	88894406	-	1	NA	NA	NA	-99	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.145000	0.805970	
mm_85953.1	chr9	112120486	112120686	-	1	NA	NA	NA	-1875	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.000000	0.462687	
mm_20132.1	chr2	121355244	121355444	-	1	NA	NA	NA	-3297	NM_009897	12716	Mm.252145	NM_009897	ENSMUSG00000000308	Ckmt1	Mt-CK|ScCKmit|UbCKmit|mi-CK	creatine kinase, mitochondrial 1, ubiquitous	protein-coding	0.115000	0.716418	
mm_42776.1	chr5	121385351	121385551	+	1	NA	NA	NA	164	NM_001163470	231712	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.160000	0.830846	
mm_124620.1	chr15	3279927	3280127	+	1	NA	NA	NA	9050	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.005000	0.323383	
mm_81272.1	chr9	108095103	108095303	+	1	NA	NA	NA	-723	NM_146226	235606	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0.045000	0.582090	
mm_77367.1	chr8	119810122	119810322	-	1	NA	NA	NA	30357	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.035000	0.621891	
mm_94935.1	chr11	29706703	29706903	+	1	NA	NA	NA	-11760	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.010000	0.402985	
mm_18928.1	chr2	76745992	76746192	-	1	NA	NA	NA	70777	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.020000	0.437811	
mm_9593.1	chr1	174921668	174921868	-	1	NA	NA	NA	51	NM_011825	23893	Mm.25760	NM_011825	ENSMUSG00000050069	Grem2	Gremlin2|Prdc	gremlin 2, DAN family BMP antagonist	protein-coding	0.080000	0.661692	
mm_34865.1	chr4	155557647	155557847	+	1	NA	NA	NA	-4645	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.005000	0.328358	26(AATTTTAAAAGG,-,0.00)
mm_106194.1	chr11	116842635	116842835	-	1	NA	NA	NA	714	NM_033398	107817	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	0.055000	0.542289	
mm_24984.1	chr3	96833138	96833338	+	1	NA	NA	NA	564	NM_001146001	59020	Mm.489677	NM_021517	ENSMUSG00000038298	Pdzk1	1700023D20Rik|2610507N21Rik|4921513F16Rik|AI267131|AI314638|AL022680|D3Ertd537e|Pdzd1|mPDZK1	PDZ domain containing 1	protein-coding	0.010000	0.587065	
mm_16695.1	chr2	6885013	6885213	-	1	NA	NA	NA	-117	NM_001160293	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.005000	0.467662	
mm_98482.1	chr11	94950774	94950974	+	1	NA	NA	NA	14650	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.030000	0.537313	
mm_108377.1	chr12	80854004	80854204	+	1	NA	NA	NA	63572	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.005000	0.482587	
mm_56420.1	chr6	97252673	97252873	-	1	NA	NA	NA	7	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.000000	0.432836	
mm_41865.1	chr5	104440664	104440864	+	1	NA	NA	NA	4572	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.010000	0.393035	
mm_9146.1	chr1	170906896	170907096	-	1	NA	NA	NA	5945	NM_001029984	435653	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0.005000	0.333333	
mm_39332.1	chr5	8660543	8660743	+	1	NA	NA	NA	551	NM_011076	18671	Mm.207354	NM_011076	ENSMUSG00000040584	Abcb1a	Abcb4|Evi32|Mdr1a|Mdr3|P-gp|Pgp|Pgy-3|Pgy3|mdr-3	ATP-binding cassette, sub-family B (MDR/TAP), member 1A	protein-coding	0.025000	0.547264	
mm_39510.1	chr5	21251299	21251499	+	1	NA	NA	NA	65132	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.010000	0.442786	
mm_16666.1	chr2	6721739	6721939	-	1	NA	NA	NA	-177	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.030000	0.547264	
mm_74029.1	chr8	121792235	121792435	+	1	NA	NA	NA	37234	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.025000	0.517413	
mm_55982.1	chr6	85915529	85915729	-	1	NA	NA	NA	48	NM_023160	66116	Mm.13036	NM_023160	ENSMUSG00000057103	Nat8f1	1110002I11Rik|AI266962|Cml1	N-acetyltransferase 8 (GCN5-related) family member 1	protein-coding	0.060000	0.577114	-36(GGCTCTAAAATG,-,0.00)
mm_54372.1	chr6	31156677	31156877	-	1	NA	NA	NA	61697	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.010000	0.402985	
mm_1340.1	chr1	66175115	66175315	+	1	NA	NA	NA	-114	NM_008632	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.150000	0.825871	
mm_103956.1	chr11	84101880	84102080	-	1	NA	NA	NA	27588	NM_172562	217031	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	0.005000	0.417910	
mm_102340.1	chr11	57832585	57832785	-	1	NA	NA	NA	-538	NM_008213	15110	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed transcript 1	protein-coding	0.030000	0.626866	
mm_83765.1	chr9	52048575	52048775	-	1	NA	NA	NA	30	NR_023357	629557	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.170000	0.776119	
mm_85010.1	chr9	87704130	87704330	-	1	NA	NA	NA	27030	NM_023814	76365	Mm.158789	NM_023814	ENSMUSG00000032419	Tbx18	2810012F10Rik|2810404D13Rik	T-box18	protein-coding	0.000000	0.308458	
mm_70346.1	chr8	4678433	4678633	+	1	NA	NA	NA	65363	NM_145591	233987	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.110000	0.641791	
mm_127114.1	chr15	97964219	97964419	+	1	NA	NA	NA	90	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.130000	0.711443	
mm_65074.1	chr7	19095464	19095664	-	1	NA	NA	NA	1020	NM_011383	20475	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0.050000	0.631841	
mm_105009.1	chr11	100396990	100397190	-	1	NA	NA	NA	700	NM_010593	16480	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0.040000	0.651741	
mm_139763.1	chr17	64601152	64601352	+	1	NA	NA	NA	-397	NM_008549	17158	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.125000	0.741294	
mm_90185.1	chr10	120160620	120160820	+	1	NA	NA	NA	40817	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.030000	0.512438	
mm_124021.1	chr14	76556548	76556748	-	1	NA	NA	NA	39	NM_001160326	72661	Mm.320384	NM_001160326	ENSMUSG00000052584	Serp2	2810032E02Rik	stress-associated endoplasmic reticulum protein family member 2	protein-coding	0.115000	0.716418	
mm_123540.1	chr14	66824308	66824508	-	1	NA	NA	NA	44192	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.045000	0.567164	
mm_92084.1	chr10	62791880	62792080	-	1	NA	NA	NA	388	NM_026201	67500	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	0.155000	0.825871	
mm_133525.1	chr16	90846530	90846730	+	1	NA	NA	NA	15771	NM_001316761	70967	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	0.000000	0.303483	
mm_138288.1	chr17	34613124	34613324	+	1	NA	NA	NA	2747	NM_152922	81701	Mm.231343	NM_152922	ENSMUSG00000015467	Egfl8	Ng3	EGF-like domain 8	protein-coding	0.015000	0.492537	
mm_173087.1	chrX	150019976	150020176	+	1	NA	NA	NA	78421	NM_001122735	382244	Mm.359506	NM_001122735	ENSMUSG00000095082	Gm15091	OTTMUSG00000018981	predicted gene 15091	protein-coding	0.085000	0.676617	
mm_170568.1	chr19	5008532	5008732	+	1	NA	NA	NA	-15374	NM_007854	13340	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	0.010000	0.432836	
mm_125520.1	chr15	57694765	57694965	+	1	NA	NA	NA	198	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.070000	0.601990	
mm_171428.1	chr4	13483112	13483312	-	1	NA	NA	NA	-260090	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.045000	0.417910	
mm_109171.1	chr12	108371088	108371288	+	1	NA	NA	NA	35	NM_001286346	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.035000	0.646766	
mm_166573.1	chr6	49073639	49073839	-	1	NA	NA	NA	-56	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.065000	0.557214	
mm_129409.1	chr15	78298092	78298292	-	1	NA	NA	NA	7529	NM_007781	12984	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	0.015000	0.567164	
mm_82564.1	chr9	21074799	21074999	-	1	NA	NA	NA	689	NR_106050	102465656		NR_106050	ENSMUSG00000098907	Mir7082	Gm27933|mmu-mir-7082	microRNA 7082	ncRNA	0.015000	0.412935	18(GTCCAGAAAAGC,-,0.00)
mm_114799.1	chr13	90089623	90089823	+	1	NA	NA	NA	56	NM_025335	66074	Mm.241387	NM_025335	ENSMUSG00000012422	Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|ENSMUSG00000060669|Gm10085|Tmem167a	transmembrane protein 167	protein-coding	0.090000	0.656716	
mm_62238.1	chr7	98703014	98703214	+	1	NA	NA	NA	-186	NR_144495	100040769	Mm.126401	NR_144495		Gm15506	OTTMUSG00000023003	predicted gene 15506	ncRNA	0.105000	0.736318	
mm_50705.1	chr6	52158315	52158515	+	1	NA	NA	NA	-98	NM_001311118	15394	Mm.197	NM_010449	ENSMUSG00000029844	Hoxa1	ERA1|Hox-1.6	homeobox A1	protein-coding	0.105000	0.676617	30(GCATTTAAATCC,+,0.00)
mm_129344.1	chr15	77849481	77849681	-	1	NA	NA	NA	-7406	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.005000	0.552239	
mm_72049.1	chr8	71346053	71346253	+	1	NA	NA	NA	-20695	NM_001145780	67023	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.015000	0.597015	
mm_71746.1	chr8	65209025	65209225	+	1	NA	NA	NA	-79588	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA	0.005000	0.422886	
mm_48580.1	chr5	143506497	143506697	-	1	NA	NA	NA	21396	NM_009007	19353	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	RAS-related C3 botulinum substrate 1	protein-coding	0.025000	0.497512	
mm_137779.1	chr17	29493021	29493221	+	1	NA	NA	NA	2076	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.015000	0.542289	21(GTGTATAAAGGC,-,0.00)
mm_115306.1	chr13	112288432	112288632	+	1	NA	NA	NA	14	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.040000	0.542289	
mm_169711.1	chr15	76180805	76181005	-	1	NA	NA	NA	14805	NM_201394	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.085000	0.706468	
mm_53365.1	chr6	129397220	129397420	+	1	NA	NA	NA	23	NM_001204239	56760	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0.030000	0.417910	
mm_137177.1	chr17	23816061	23816261	+	1	NA	NA	NA	12948	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.065000	0.542289	
mm_138874.1	chr17	43087917	43088117	+	1	NA	NA	NA	70274	NR_045155	545207	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0.015000	0.447761	
mm_87325.1	chr10	42860693	42860893	+	1	NA	NA	NA	281	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.030000	0.577114	
mm_69266.1	chr7	127898349	127898549	-	1	NA	NA	NA	-2832	NM_178600	27973	Mm.29703	NM_178600	ENSMUSG00000096145	Vkorc1	D7Wsu86e	vitamin K epoxide reductase complex, subunit 1	protein-coding	0.010000	0.373134	
mm_120593.1	chr14	70076815	70077015	+	1	NA	NA	NA	-530	NM_018781	13655	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.065000	0.636816	-74(GTCCATATATGG,-,0.00),-72(CCATATATGGGC,+,0.00)
mm_164067.1	chr14	118457398	118457598	+	1	NA	NA	NA	91620	NR_045624	73306	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	0.015000	0.532338	
mm_28505.1	chr3	92532884	92533084	-	1	NA	NA	NA	-32491	NM_173070	229562	Mm.246590	NM_173070	ENSMUSG00000045566	Sprr4	-	small proline-rich protein 4	protein-coding	0.000000	0.671642	
mm_23220.1	chr3	48123400	48123600	+	1	NA	NA	NA	-96741	NR_040408	666202	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	0.030000	0.457711	
mm_41761.1	chr5	103366276	103366476	+	1	NA	NA	NA	-58816	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.025000	0.537313	
mm_155017.1	chrX	42059435	42059635	+	1	NA	NA	NA	-8301	NM_009688	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.005000	0.447761	
mm_169298.1	chr14	101463032	101463232	-	1	NA	NA	NA	146059	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.040000	0.562189	
mm_126045.1	chr15	76904799	76904999	+	1	NA	NA	NA	828	NM_012053	26961	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0.045000	0.601990	
mm_172897.1	chr9	56223855	56224055	-	1	NA	NA	NA	-62885	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.030000	0.497512	
mm_85697.1	chr9	108094373	108094573	-	1	NA	NA	NA	7	NM_146226	235606	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0.080000	0.681592	
mm_146124.1	chr18	74442491	74442691	+	1	NA	NA	NA	-28	NM_201600	17919	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	0.130000	0.726368	
mm_32940.1	chr4	119320503	119320703	+	1	NA	NA	NA	-80	NM_001110130	66101	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	0.085000	0.606965	
mm_12202.1	chr2	65930054	65930254	+	1	NA	NA	NA	-1711	NM_001290665	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding	0.025000	0.492537	
mm_126496.1	chr15	81726284	81726484	+	1	NA	NA	NA	3535	NM_011241	19387	Mm.270975	NM_011241	ENSMUSG00000022391	Rangap1	C79654|Fug1|mKIAA1835	RAN GTPase activating protein 1	protein-coding	0.025000	0.512438	
mm_49877.1	chr6	38592839	38593039	+	1	NA	NA	NA	37216	NM_001331223	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.005000	0.358209	
mm_51682.1	chr6	86472724	86472924	+	1	NA	NA	NA	8006	NR_131125	320486	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	0.015000	0.547264	
mm_84172.1	chr9	59948433	59948633	-	1	NA	NA	NA	1546	NM_013708	23958	Mm.103641	NM_013708	ENSMUSG00000032292	Nr2e3	A930035N01Rik|PNR|RNR|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding	0.030000	0.562189	
mm_40141.1	chr5	35166286	35166486	+	1	NA	NA	NA	-60689	NM_013587	16976	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.005000	0.507463	
mm_136976.1	chr17	15758532	15758732	+	1	NA	NA	NA	53665	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.005000	0.358209	
mm_158221.1	chrX	106010845	106011045	-	1	NA	NA	NA	954	NM_001190409	67075	Mm.275943	NM_025952	ENSMUSG00000031232	Magt1	2410001C15Rik|2610529C04Rik|2810482I07Rik|IAG2|IAP	magnesium transporter 1	protein-coding	0.010000	0.383085	81(AGCTTTAAAAAA,-,0.00),82(GCTTTAAAAAAC,+,0.00)
mm_160717.1	chr10	63024372	63024572	+	1	NA	NA	NA	-40	NM_026085	67307	Mm.368563	NM_026085	ENSMUSG00000020072	Pbld2	3110049J23Rik|Mawbp	phenazine biosynthesis-like protein domain containing 2	protein-coding	0.040000	0.512438	
mm_87971.1	chr10	63457452	63457652	+	1	NA	NA	NA	41	NM_001164376	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.015000	0.522388	
mm_140844.1	chr17	23675770	23675970	-	1	NA	NA	NA	1579	NM_001161746	27279	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	0.020000	0.567164	
mm_85377.1	chr9	103225069	103225269	-	1	NA	NA	NA	5117	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.010000	0.557214	
mm_56925.1	chr6	119417593	119417793	-	1	NA	NA	NA	-210	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.025000	0.547264	
mm_149424.1	chr19	11447430	11447630	+	1	NA	NA	NA	3972	NM_021718	60361	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	0.000000	0.437811	
mm_137271.1	chr17	24699804	24700004	+	1	NA	NA	NA	3670	NM_027988	71893	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	0.030000	0.621891	
mm_3086.1	chr1	134405923	134406123	+	1	NA	NA	NA	33	NM_028057	72017	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	0.090000	0.706468	
mm_113455.1	chr13	35870647	35870847	+	1	NA	NA	NA	35600	NM_145938	208366	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	0.035000	0.542289	
mm_119814.1	chr14	54223867	54224067	+	1	NA	NA	NA	29962	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.025000	0.457711	
mm_128488.1	chr15	50890319	50890519	-	1	NA	NA	NA	-378	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.055000	0.606965	
mm_134521.1	chr16	19236112	19236312	-	1	NA	NA	NA	50529	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.000000	0.328358	85(TTCTTTAAAAGT,-,0.00),86(TCTTTAAAAGTC,+,0.00)
mm_91039.1	chr10	18545675	18545875	-	1	NA	NA	NA	301	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	0.055000	0.666667	
mm_78674.1	chr9	40780983	40781183	+	1	NA	NA	NA	-20190	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.025000	0.562189	
mm_145808.1	chr18	65412729	65412929	+	1	NA	NA	NA	-18168	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.288557	12(TGGTATTTAAGG,-,0.00)
mm_78463.1	chr9	32504232	32504432	+	1	NA	NA	NA	37120	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.020000	0.492537	-34(GGGTATATATAG,-,0.00),-32(GTATATATAGCC,+,0.00)
mm_97455.1	chr11	78194680	78194880	+	1	NA	NA	NA	1388	NM_001045516	216974	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	0.055000	0.631841	
mm_18015.1	chr2	38368881	38369081	-	1	NA	NA	NA	17673	NM_010710	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.070000	0.626866	
mm_85590.1	chr9	107333721	107333921	-	1	NA	NA	NA	4529	NM_133984	69536	Mm.259467	NM_133984	ENSMUSG00000032579	Hemk1	2310008M14Rik|AW049265	HemK methyltransferase family member 1	protein-coding	0.010000	0.547264	
mm_21358.1	chr2	157125021	157125221	-	1	NA	NA	NA	10101	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.000000	0.472637	
mm_149404.1	chr19	11392609	11392809	+	1	NA	NA	NA	-14952	NM_029499	64380	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	0.000000	0.378109	
mm_100779.1	chr11	4808247	4808447	-	1	NA	NA	NA	24788	NM_001252253	18016	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	0.020000	0.467662	
mm_78365.1	chr9	26999577	26999777	+	1	NA	NA	NA	0	NM_144543	77862	Mm.16925	NM_144543	ENSMUSG00000035443	Thyn1	D730042P09Rik|HSPC144|MDS012|MY105|Thy28	thymocyte nuclear protein 1	protein-coding	0.065000	0.577114	
mm_72228.1	chr8	73383296	73383496	+	1	NA	NA	NA	-29856	NM_010687	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.005000	0.412935	
mm_133559.1	chr16	91391684	91391884	+	1	NA	NA	NA	-14451	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.025000	0.422886	
mm_74801.1	chr8	22476741	22476941	-	1	NA	NA	NA	38	NM_001012667	102032	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	0.155000	0.731343	
mm_16408.1	chr2	180042429	180042629	+	1	NA	NA	NA	46	NM_178750	269397	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	0.130000	0.761194	
mm_45118.1	chr5	45806581	45806781	-	1	NA	NA	NA	49871	NM_172153	209707	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	0.000000	0.308458	
mm_131644.1	chr16	20517003	20517203	+	1	NA	NA	NA	39	NM_007889	13544	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	-	dishevelled segment polarity protein 3	protein-coding	0.150000	0.815920	
mm_54655.1	chr6	39087431	39087631	-	1	NA	NA	NA	-19945	NR_040523	69986	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.055000	0.552239	
mm_169339.1	chr14	123793213	123793413	+	1	NA	NA	NA	133173	NM_145467	223272	Mm.383176	NM_145467	ENSMUSG00000032925	Itgbl1	B930011D01Rik	integrin, beta-like 1	protein-coding	0.055000	0.631841	
mm_139683.1	chr17	57417409	57417609	+	1	NA	NA	NA	58823	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.343284	
mm_96173.1	chr11	61505074	61505274	+	1	NA	NA	NA	30	NM_001330781	27078	Mm.261226	NM_013717	ENSMUSG00000001039	B9d1	AW045994|B9|Eppb9	B9 protein domain 1	protein-coding	0.075000	0.587065	
mm_56955.1	chr6	120022692	120022892	-	1	NA	NA	NA	11519	NR_030487	735290		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	0.010000	0.303483	
mm_153336.1	chr19	38224040	38224240	-	1	NA	NA	NA	-8	NM_001081075	70567	Mm.30607	NM_001081075	ENSMUSG00000054237	Fra10ac1	5730455O13Rik|AI448293	FRA10AC1 homolog (human)	protein-coding	0.135000	0.716418	
mm_161652.1	chr17	6601681	6601881	+	1	NA	NA	NA	2	NM_001166630	100040563	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	0.100000	0.661692	
mm_66861.1	chr7	55962374	55962574	-	1	NA	NA	NA	19	NM_001256133	93790	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	0.110000	0.701493	
mm_143549.1	chr17	74017366	74017566	-	1	NA	NA	NA	30450	NM_053188	94224	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.005000	0.417910	
mm_40296.1	chr5	43515712	43515912	+	1	NA	NA	NA	243	NM_001135172	109323	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	0.030000	0.432836	
mm_54270.1	chr6	28833338	28833538	-	1	NA	NA	NA	-1691	NM_138682	192198	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.120000	0.706468	
mm_161024.1	chr12	3451595	3451795	+	1	NA	NA	NA	24838	NM_172421	75302	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2 (Drosophila)	protein-coding	0.010000	0.383085	
mm_101343.1	chr11	23633454	23633654	-	1	NA	NA	NA	77	NM_001347242	71675	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	0.145000	0.776119	
mm_5491.1	chr1	36939427	36939627	-	1	NA	NA	NA	0	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.120000	0.706468	
mm_91345.1	chr10	26544786	26544986	-	1	NA	NA	NA	129765	NR_033633	667572	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.000000	0.388060	-33(GAATATAAAAGA,-,0.00)
mm_94476.1	chr11	6560100	6560300	+	1	NA	NA	NA	17	NM_001190344	216527	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0.005000	0.452736	
mm_119222.1	chr14	33227556	33227756	+	1	NA	NA	NA	10833	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.010000	0.492537	
mm_150152.1	chr19	31950522	31950722	+	1	NA	NA	NA	81861	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.000000	0.417910	
mm_90846.1	chr10	8762139	8762339	-	1	NA	NA	NA	123831	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.040000	0.582090	
mm_133424.1	chr16	87440520	87440720	+	1	NA	NA	NA	-28	NM_016924	53858	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	0.090000	0.587065	
mm_63067.1	chr7	122132943	122133143	+	1	NA	NA	NA	2	NM_021608	59288	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	0.065000	0.577114	
mm_32699.1	chr4	116075251	116075451	+	1	NA	NA	NA	82	NM_153521	230654	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	0.070000	0.557214	-13(GGTCCTAAAAGC,-,0.00)
mm_136253.1	chr16	90956788	90956988	-	1	NA	NA	NA	-22039	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.010000	0.343284	
mm_126038.1	chr15	76903981	76904181	+	1	NA	NA	NA	10	NM_012053	26961	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0.080000	0.592040	
mm_171677.1	chr4	53058267	53058467	-	1	NA	NA	NA	46487	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.065000	0.666667	
mm_65064.1	chr7	18910163	18910363	-	1	NA	NA	NA	141	NM_001033314	232933	Mm.333624	NM_001033314	ENSMUSG00000074358	Ccdc61	C530028I08Rik|Gm159	coiled-coil domain containing 61	protein-coding	0.095000	0.616915	
mm_82114.1	chr9	123461803	123462003	+	1	NA	NA	NA	-16798	NM_013860	29806	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.055000	0.522388	
mm_66736.1	chr7	46672205	46672405	-	1	NA	NA	NA	232	NM_009414	21990	Mm.248684	NM_009414	ENSMUSG00000040046	Tph1	Tph	tryptophan hydroxylase 1	protein-coding	0.010000	0.522388	
mm_93637.1	chr10	117282289	117282489	-	1	NA	NA	NA	-117	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.005000	0.398010	87(GCTTAAATAGCA,+,0.00)
mm_119820.1	chr14	54227584	54227784	+	1	NA	NA	NA	26245	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.035000	0.621891	
mm_64295.1	chr7	141861024	141861224	+	1	NA	NA	NA	22052	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.015000	0.572139	
mm_13785.1	chr2	118813911	118814111	+	1	NA	NA	NA	8	NM_026412	51944	Mm.252695	NM_026412	ENSMUSG00000027331	Knstrn	1700025D04Rik|C15orf23|D2Ertd750e|SKAP|Traf4af1	kinetochore-localized astrin/SPAG5 binding	protein-coding	0.035000	0.557214	
mm_167007.1	chr7	51880173	51880373	+	1	NA	NA	NA	1306	NM_001330607	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.010000	0.507463	
mm_58468.1	chr7	3390227	3390427	+	1	NA	NA	NA	-3715	NM_133190	81905	Mm.357990	NM_133190	ENSMUSG00000053395	Cacng8	-	calcium channel, voltage-dependent, gamma subunit 8	protein-coding	0.010000	0.552239	
mm_51408.1	chr6	78380608	78380808	+	1	NA	NA	NA	-1	NM_011259	19694	Mm.2552	NM_011259	ENSMUSG00000079516	Reg3a	AV063448	regenerating islet-derived 3 alpha	protein-coding	0.000000	0.427861	
mm_164662.1	chr17	40239112	40239312	-	1	NA	NA	NA	3046	NM_009639	11572	Mm.14138	NM_009639	ENSMUSG00000025433	Crisp3	Aeg2|CRISP-3|CRS3|SGP28	cysteine-rich secretory protein 3	protein-coding	0.000000	0.383085	
mm_39890.1	chr5	31154167	31154367	+	1	NA	NA	NA	-16	NM_008622	17527	Mm.271923	NM_008622	ENSMUSG00000107283	Mpv17	Tg.Mpv17	MpV17 mitochondrial inner membrane protein	protein-coding	0.060000	0.616915	
mm_74456.1	chr8	4214376	4214576	-	1	NA	NA	NA	2836	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.010000	0.577114	
mm_85644.1	chr9	107656036	107656236	-	1	NA	NA	NA	11263	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.020000	0.631841	
mm_145914.1	chr18	66504079	66504279	+	1	NA	NA	NA	1	NR_040528	100503565	Mm.98256	NR_040528		Gm9926	ENSMUSG00000053891	predicted gene 9926	ncRNA	0.035000	0.517413	
mm_121558.1	chr14	122484197	122484397	+	1	NA	NA	NA	8913	NM_009574	22772	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0.035000	0.572139	
mm_158590.1	chrX	150954749	150954949	-	1	NA	NA	NA	62444	NM_001168600	237107	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	0.005000	0.497512	
mm_49142.1	chr6	10883225	10883425	+	1	NA	NA	NA	91053	NR_033776	57866	Mm.4397	NR_033776		AA545190	-	EST AA545190	ncRNA	0.000000	0.437811	
mm_90631.1	chr10	128474472	128474672	+	1	NA	NA	NA	15336	NM_001114097	68094	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	0.020000	0.621891	
mm_79938.1	chr9	65903000	65903200	+	1	NA	NA	NA	5694	NM_019797	56404	Mm.208379	NM_019797	ENSMUSG00000032386	Trip4	4930558E03Rik|ASC-1|Asc1|BB191711	thyroid hormone receptor interactor 4	protein-coding	0.005000	0.417910	
mm_101760.1	chr11	43598542	43598742	-	1	NA	NA	NA	2920	NM_008375	16204	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0.015000	0.517413	
mm_154284.1	chr19	60861326	60861526	-	1	NA	NA	NA	4	NM_053198	94281	Mm.48179	NM_053198	ENSMUSG00000063698	Sfxn4	-	sideroflexin 4	protein-coding	0.060000	0.592040	
mm_19002.1	chr2	76872744	76872944	-	1	NA	NA	NA	109703	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.055000	0.477612	
mm_146702.1	chr18	13815557	13815757	-	1	NA	NA	NA	157076	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.010000	0.363184	
mm_32809.1	chr4	117126671	117126871	+	1	NA	NA	NA	-42	NM_175030	242646	Mm.358914	NM_175030	ENSMUSG00000047671	Tctex1d4	4833401D15Rik	Tctex1 domain containing 4	protein-coding	0.005000	0.582090	
mm_26383.1	chr3	142569033	142569233	+	1	NA	NA	NA	8637	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.015000	0.522388	
mm_27172.1	chr3	33990501	33990701	-	1	NA	NA	NA	-29478	NM_001113189	14359	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0.025000	0.547264	
mm_132837.1	chr16	45610328	45610528	+	1	NA	NA	NA	-12	NM_008099	14525	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	0.015000	0.587065	
mm_63337.1	chr7	126951993	126952193	+	1	NA	NA	NA	1558	NM_001252566	233878	Mm.283926	NM_144926	ENSMUSG00000030683	Sez6l2	AI835913|AW121566|BSRP-A|Psk1	seizure related 6 homolog like 2	protein-coding	0.020000	0.606965	
mm_80688.1	chr9	91378261	91378461	+	1	NA	NA	NA	9389	NM_009576	22774	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.030000	0.507463	
mm_163688.1	chr13	96832277	96832477	+	1	NA	NA	NA	-92312	NM_001166065	218476	Mm.483490	NM_001166065	ENSMUSG00000091387	Gcnt4	C2gnt3|Gm279|Gm73	glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)	protein-coding	0.005000	0.323383	
mm_39031.1	chr4	152287972	152288172	-	1	NA	NA	NA	3590	NM_008237	15207	Mm.3516	NM_008237	ENSMUSG00000028946	Hes3	Hes-3|bHLHb43	hairy and enhancer of split 3 (Drosophila)	protein-coding	0.025000	0.567164	-33(CCCTATAAAGGC,+,0.00),-33(CCCTATAAAGGC,-,0.00)
mm_60262.1	chr7	43824355	43824555	+	1	NA	NA	NA	-89	NM_001164697	19144	Mm.3944	NM_011177	ENSMUSG00000050063	Klk6	AI849898|BSP|Bssp|Klk29|MSP|Prss18|Prss9|neurosin	kallikrein related-peptidase 6	protein-coding	0.030000	0.542289	
mm_107356.1	chr12	32830045	32830245	+	1	NA	NA	NA	6029	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.010000	0.378109	
mm_29871.1	chr3	130730281	130730481	-	1	NA	NA	NA	17	NM_001005859	68436	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.105000	0.631841	
mm_39740.1	chr5	29537992	29538192	+	1	NA	NA	NA	143	NR_102704	619355	Mm.426744	NR_102704		Gm6083	ENSMUSG00000078182	developmental pluripotency associated 5 pseudogene	pseudo	0.020000	0.457711	
mm_70238.1	chr8	3353343	3353543	+	1	NA	NA	NA	28	NM_001033378	319493	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0.030000	0.601990	
mm_153093.1	chr19	32673410	32673610	-	1	NA	NA	NA	38788	NM_026487	67979	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.010000	0.318408	
mm_14679.1	chr2	139677086	139677286	+	1	NA	NA	NA	-992	NM_001276489	319909	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1, angiogenesis inhibitor	protein-coding	0.040000	0.606965	-34(CAGTATAAAAGT,-,0.00)
mm_130503.1	chr15	98831404	98831604	-	1	NA	NA	NA	4	NM_016781	19082	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.090000	0.691542	
mm_168634.1	chr1	183204856	183205056	-	1	NA	NA	NA	16573	NM_001278218	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0.000000	0.412935	
mm_32852.1	chr4	117998532	117998732	+	1	NA	NA	NA	-68869	NM_001284192	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.020000	0.492537	
mm_96388.1	chr11	67248588	67248788	+	1	NA	NA	NA	10876	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.025000	0.502488	72(CTTTTTATAGTA,+,0.00)
mm_93968.1	chr10	127288917	127289117	-	1	NA	NA	NA	1	NM_001347171	110962	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.150000	0.805970	
mm_120936.1	chr14	76507332	76507532	+	1	NA	NA	NA	2922	NM_009366	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.010000	0.388060	
mm_139404.1	chr17	52457076	52457276	+	1	NA	NA	NA	-145533	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.000000	0.452736	
mm_141618.1	chr17	32872149	32872349	-	1	NA	NA	NA	19354	NM_207245	240066	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0.015000	0.517413	
mm_123300.1	chr14	61635996	61636196	-	1	NA	NA	NA	-3986	NR_029733	387174		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0.000000	0.427861	
mm_146078.1	chr18	70580963	70581163	+	1	NA	NA	NA	12771	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.015000	0.432836	
mm_86547.1	chr10	9901197	9901397	+	1	NA	NA	NA	-257	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0.115000	0.731343	
mm_153181.1	chr19	34495023	34495223	-	1	NA	NA	NA	-19988	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.020000	0.348259	
mm_39707.1	chr5	27262159	27262359	+	1	NA	NA	NA	324	NM_001136060	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.025000	0.567164	
mm_17560.1	chr2	30178494	30178694	-	1	NA	NA	NA	-135	NM_172660	227695	Mm.4449	NM_172660	ENSMUSG00000039660	Spout1	9930028P05|AL033358|D2Wsu81e	SPOUT domain containing methyltransferase 1	protein-coding	0.065000	0.606965	
mm_93671.1	chr10	117710099	117710299	-	1	NA	NA	NA	559	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.100000	0.736318	
mm_166834.1	chr7	19271455	19271655	-	1	NA	NA	NA	299	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.095000	0.736318	
mm_152049.1	chr19	6234867	6235067	-	1	NA	NA	NA	873	NM_198168	225849	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0.005000	0.611940	
mm_20207.1	chr2	125505841	125506041	-	1	NA	NA	NA	497	NM_007993	14118	Mm.271644	NM_007993	ENSMUSG00000027204	Fbn1	AI536462|B430209H23|Fib-1|Tsk	fibrillin 1	protein-coding	0.125000	0.701493	
mm_11193.1	chr2	29122687	29122887	+	1	NA	NA	NA	-2205	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.015000	0.502488	
mm_83424.1	chr9	44974252	44974452	-	1	NA	NA	NA	6079	NM_009850	12502	Mm.335106	NM_009850	ENSMUSG00000002033	Cd3g	Ctg-3|Ctg3|T3g	CD3 antigen, gamma polypeptide	protein-coding	0.020000	0.442786	47(GCTTAAAGACGG,+,0.00),71(TCCTCTAAATGC,-,0.00)
mm_169423.1	chr14	53259488	53259688	+	1	NA	NA	NA	-763893	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.000000	0.477612	
mm_160176.1	chr7	45526235	45526435	+	1	NA	NA	NA	5	NM_148927	69217	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0.100000	0.597015	-90(GCTTTTATACCC,+,0.00)
mm_90093.1	chr10	116962330	116962530	+	1	NA	NA	NA	-2310	NR_027847	103175	Mm.27138	NR_027846	ENSMUSG00000031294	D630029K05Rik	AI314111|AI875589	RIKEN cDNA D630029K05 gene	ncRNA	0.045000	0.527363	
mm_155958.1	chrX	105499671	105499871	+	1	NA	NA	NA	-1	NM_173436	245566	Mm.250428	NM_173436	ENSMUSG00000090132	Cypt2	Ckt1|Cypt2-ps	cysteine-rich perinuclear theca 2	protein-coding	0.020000	0.572139	
mm_60359.1	chr7	44428727	44428927	+	1	NA	NA	NA	-13660	NM_198250	272381	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	0.090000	0.751244	
mm_104724.1	chr11	98203066	98203266	-	1	NA	NA	NA	-139	NM_001109628	69131	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.100000	0.716418	
mm_168141.1	chr10	3241894	3242094	-	1	NA	NA	NA	25777	NM_001204916	670558	Mm.398582	NM_001204916	ENSMUSG00000091618	H60c	4632413I24Rik|Gm9491	histocompatibility 60c	protein-coding	0.025000	0.497512	
mm_58079.1	chr6	136941431	136941631	-	1	NA	NA	NA	-28	NM_001301305	11857	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	0.015000	0.527363	
mm_100767.1	chr11	4594766	4594966	-	1	NA	NA	NA	-51	NM_028860	74302	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0.125000	0.736318	
mm_50959.1	chr6	58906462	58906662	+	1	NA	NA	NA	564	NM_021432	58243	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.045000	0.606965	
mm_46574.1	chr5	107289411	107289611	-	1	NA	NA	NA	84	NM_011578	21814	Mm.200775	NM_011578	ENSMUSG00000029287	Tgfbr3	1110036H20Rik|AU015626|AW215636|TBRIII	transforming growth factor, beta receptor III	protein-coding	0.115000	0.701493	
mm_8587.1	chr1	156005600	156005800	-	1	NA	NA	NA	29117	NM_001160019	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.005000	0.278607	
mm_4738.1	chr1	181842458	181842658	+	1	NA	NA	NA	-157	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.130000	0.716418	
mm_68502.1	chr7	111080839	111081039	-	1	NA	NA	NA	2091	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.015000	0.393035	
mm_91161.1	chr10	20589426	20589626	-	1	NA	NA	NA	-41198	NM_001347366	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.000000	0.437811	
mm_2381.1	chr1	93478421	93478621	+	1	NA	NA	NA	396	NM_133808	110611	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0.090000	0.676617	
mm_166084.1	chr4	138834800	138835000	+	1	NA	NA	NA	3024	NM_001082531	18780	Mm.4675	NM_011108	ENSMUSG00000058908	Pla2g2a	EF|Mom1|Pla2|sPLA2|sPla2-IIA	phospholipase A2, group IIA (platelets, synovial fluid)	protein-coding	0.030000	0.512438	
mm_145567.1	chr18	60812462	60812662	+	1	NA	NA	NA	486	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.000000	0.537313	
mm_167780.1	chr9	115186115	115186315	+	1	NA	NA	NA	95855	NR_029430	111186	Mm.484753	NR_029430		Stmn1-rs1	Lag-rs1|Lap18-rs1	stathmin 1, related sequence 1	pseudo	0.015000	0.507463	
mm_54897.1	chr6	47454518	47454718	-	1	NA	NA	NA	294	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.175000	0.805970	
mm_68726.1	chr7	120201918	120202118	-	1	NA	NA	NA	-30	NM_016669	12971	Mm.9114	NM_016669	ENSMUSG00000030905	Crym	-	crystallin, mu	protein-coding	0.075000	0.666667	
mm_71467.1	chr8	46534591	46534791	+	1	NA	NA	NA	-17378	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.035000	0.482587	42(ACCCATAAAAGT,-,0.00)
mm_86617.1	chr10	13965709	13965909	+	1	NA	NA	NA	-570	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.105000	0.706468	
mm_127265.1	chr15	99717486	99717686	+	1	NA	NA	NA	-7	NM_010271	14555	Mm.252391	NM_010271	ENSMUSG00000023019	Gpd1	AI747587|Gdc-1|Gdc1|mKIAA4010	glycerol-3-phosphate dehydrogenase 1 (soluble)	protein-coding	0.030000	0.636816	
mm_118804.1	chr14	25377992	25378192	+	1	NA	NA	NA	-81093	NM_001310666	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.050000	0.587065	
mm_145763.1	chr18	64921026	64921226	+	1	NA	NA	NA	33370	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.015000	0.447761	
mm_29813.1	chr3	127895411	127895611	-	1	NA	NA	NA	812	NM_027482	70617	Mm.317049	NM_027482	ENSMUSG00000050549	5730508B09Rik	2700063A17Rik|C80506	RIKEN cDNA 5730508B09 gene	protein-coding	0.010000	0.333333	
mm_143697.1	chr17	80480349	80480549	-	1	NA	NA	NA	4	NM_009231	20662	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	son of sevenless homolog 1 (Drosophila)	protein-coding	0.140000	0.726368	
mm_25757.1	chr3	123508459	123508659	+	1	NA	NA	NA	-223	NR_028574	69895	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	0.090000	0.616915	
mm_2414.1	chr1	93996168	93996368	+	1	NA	NA	NA	5759	NM_001039219	619597	Mm.417228	NM_001039219	ENSMUSG00000073608	Gm6086	EG619597|Gm219	predicted gene 6086	protein-coding	0.005000	0.537313	
mm_75534.1	chr8	57320312	57320512	-	1	NA	NA	NA	447	NR_110474	102636514		NR_110474	ENSMUSG00000100510	Uph	-	upperhand	ncRNA	0.040000	0.547264	
mm_68857.1	chr7	126377293	126377493	-	1	NA	NA	NA	541	NM_023712	73658	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	0.065000	0.611940	
mm_137169.1	chr17	23812411	23812611	+	1	NA	NA	NA	9324	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.005000	0.492537	
mm_144274.1	chr18	11657319	11657519	+	1	NA	NA	NA	70	NM_001081223	225182	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8	protein-coding	0.140000	0.776119	
mm_168684.1	chr11	95923317	95923517	-	1	NA	NA	NA	-8546	NM_008081	14422	Mm.340702	NM_008081	ENSMUSG00000013418	B4galnt2	AI593864|Dlb-1|Dlb1|Galg2|Galgt2|Ggm3|Igf2bp1	beta-1,4-N-acetyl-galactosaminyl transferase 2	protein-coding	0.055000	0.502488	
mm_129837.1	chr15	83154297	83154497	-	1	NA	NA	NA	4752	NR_004432	104307	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.005000	0.601990	
mm_644.1	chr1	40405587	40405787	+	1	NA	NA	NA	-23883	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.010000	0.333333	
mm_110413.1	chr12	46696912	46697112	-	1	NA	NA	NA	121763	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.005000	0.402985	
mm_3832.1	chr1	159926143	159926343	+	1	NA	NA	NA	-118137	NR_028111	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.010000	0.467662	
mm_166292.1	chr5	102796220	102796420	+	1	NA	NA	NA	27510	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.010000	0.398010	
mm_25053.1	chr3	98382446	98382646	+	1	NA	NA	NA	65	NM_172863	242109	Mm.358911	NM_172863	ENSMUSG00000050064	Zfp697	9430053K19|AI467503|Znf697	zinc finger protein 697	protein-coding	0.080000	0.691542	
mm_87483.1	chr10	51493844	51494044	+	1	NA	NA	NA	3046	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.363184	
mm_111338.1	chr12	86884307	86884507	-	1	NA	NA	NA	407	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.090000	0.691542	
mm_42469.1	chr5	115454083	115454283	+	1	NA	NA	NA	-12083	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.015000	0.527363	-56(CCCTTTAGGGCA,+,0.00)
mm_18586.1	chr2	66410009	66410209	-	1	NA	NA	NA	30728	NM_018733	20265	Mm.439704	NM_018733	ENSMUSG00000064329	Scn1a	B230332M13|Nav1.1	sodium channel, voltage-gated, type I, alpha	protein-coding	0.035000	0.432836	
mm_123218.1	chr14	59441210	59441410	-	1	NA	NA	NA	329	NM_026908	69008	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding	0.045000	0.557214	
mm_9482.1	chr1	173437145	173437345	-	1	NA	NA	NA	16641	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.005000	0.462687	
mm_126009.1	chr15	76576266	76576466	+	1	NA	NA	NA	7	NR_073123	268822	Mm.181624	NM_172960	ENSMUSG00000022550	Adck5	A230108P17	aarF domain containing kinase 5	protein-coding	0.105000	0.671642	
mm_122866.1	chr14	54912940	54913140	-	1	NA	NA	NA	92	NM_021551	59049	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	0.085000	0.701493	
mm_139856.1	chr17	69969126	69969326	+	1	NA	NA	NA	153	NM_001347411	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.140000	0.791045	
mm_140651.1	chr17	12691940	12692140	-	1	NA	NA	NA	-16202	NM_009202	20517	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.020000	0.452736	
mm_169061.1	chr13	25052915	25053115	+	1	NA	NA	NA	-2989	NM_001195617	195208	Mm.284719	NM_177577	ENSMUSG00000035910	Dcdc2a	AW492955|Dcdc2|RU2	doublecortin domain containing 2a	protein-coding	0.020000	0.462687	
mm_54569.1	chr6	38002899	38003099	-	1	NA	NA	NA	43997	NM_177200	320590	Mm.197449	NM_177200	ENSMUSG00000029830	Svopl	9430071P14Rik	SV2 related protein homolog (rat)-like	protein-coding	0.010000	0.273632	-99(ATCTTTAAAAGT,-,0.00),-98(TCTTTAAAAGTC,+,0.00),-44(TTTTTTAAAGCT,+,0.00)
mm_41594.1	chr5	95956825	95957025	+	1	NA	NA	NA	-14	NM_018866	55985	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.015000	0.542289	
mm_51177.1	chr6	70726631	70726831	+	1	NA	NA	NA	65444	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.020000	0.507463	
mm_40491.1	chr5	57717132	57717332	+	1	NA	NA	NA	687	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	0.045000	0.611940	
mm_82414.1	chr9	14900719	14900919	-	1	NA	NA	NA	3132	NM_176807	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.025000	0.532338	
mm_46597.1	chr5	107837383	107837583	-	1	NA	NA	NA	7321	NM_001276397	73318	Mm.441500	NM_028502	ENSMUSG00000063447	Ube2d2b	1700013N18Rik	ubiquitin-conjugating enzyme E2D 2B	protein-coding	0.005000	0.293532	
mm_86161.1	chr9	118406036	118406236	-	1	NA	NA	NA	-23703	NR_040716	71196	Mm.73218	NR_040716	ENSMUSG00000111843	4933432G23Rik	-	RIKEN cDNA 4933432G23 gene	ncRNA	0.030000	0.542289	
mm_43521.1	chr5	137150980	137151180	+	1	NA	NA	NA	-34873	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.487562	
mm_104536.1	chr11	96347253	96347453	-	1	NA	NA	NA	3584	NM_010458	15410	Mm.342481	NM_010458	ENSMUSG00000048763	Hoxb3	Hox-2.7	homeobox B3	protein-coding	0.005000	0.407960	
mm_158481.1	chrX	142196857	142197057	-	1	NA	NA	NA	-21	NM_001007576	245650	Mm.208511	NM_001007576	ENSMUSG00000042282	Gucy2f	A930002I06|GC-F|GC2	guanylate cyclase 2f	protein-coding	0.005000	0.422886	
mm_106924.1	chr12	8342844	8343044	+	1	NA	NA	NA	29511	NM_021429	58240	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.000000	0.412935	
mm_81372.1	chr9	108853977	108854177	+	1	NA	NA	NA	34	NM_134420	171429	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.055000	0.611940	
mm_16498.1	chr2	181187694	181187894	+	1	NA	NA	NA	451	NM_025598	66496	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0.080000	0.706468	
mm_18974.1	chr2	76841122	76841322	-	1	NA	NA	NA	141325	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.025000	0.507463	
mm_31826.1	chr4	69853835	69854035	+	1	NA	NA	NA	556500	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.015000	0.472637	78(GCTTATCAAGCC,+,0.00)
mm_148333.1	chr18	84099266	84099466	-	1	NA	NA	NA	11208	NM_146090	225791	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.000000	0.437811	62(GCTTATATAACC,+,0.00)
mm_85111.1	chr9	95407088	95407288	-	1	NA	NA	NA	82	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.110000	0.726368	
mm_121066.1	chr14	95578586	95578786	+	1	NA	NA	NA	-302580	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	0.000000	0.363184	
mm_38872.1	chr4	149675954	149676154	-	1	NA	NA	NA	35	NM_001164051	18707	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol 3-kinase catalytic delta polypeptide	protein-coding	0.135000	0.796020	
mm_102054.1	chr11	52168027	52168227	-	1	NA	NA	NA	-10220	NR_034155	257871	Mm.253576	NR_034155		Olfr1372-ps1	GA_x5J8B7TR6JS-3-632|MOR256-54P|NP_TR6JSE50FPA	olfactory receptor 1372, pseudogene 1	pseudo	0.140000	0.800995	
mm_143950.1	chr17	86810893	86811093	-	1	NA	NA	NA	57129	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.035000	0.507463	
mm_56487.1	chr6	99173246	99173446	-	1	NA	NA	NA	93169	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.020000	0.462687	
mm_27416.1	chr3	51400656	51400856	-	1	NA	NA	NA	-4209	NR_028121	67749	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	0.045000	0.542289	
mm_73862.1	chr8	118309314	118309514	+	1	NA	NA	NA	25803	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.005000	0.517413	
mm_93788.1	chr10	120628061	120628261	-	1	NA	NA	NA	-137571	NR_038000	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.005000	0.512438	
mm_34954.1	chr4	155992307	155992507	+	1	NA	NA	NA	271	NM_080445	117592	Mm.440185	NM_080445	ENSMUSG00000050796	B3galt6	BB129894|GalTII	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	protein-coding	0.160000	0.766169	
mm_91899.1	chr10	60162277	60162477	-	1	NA	NA	NA	35601	NR_105871	102465546		NR_105871	ENSMUSG00000105468	Mir6906	mmu-mir-6906	microRNA 6906	ncRNA	0.015000	0.477612	-34(CTCTTTATATGC,-,0.00),-32(CTTTATATGCTC,+,0.00)
mm_3035.1	chr1	134037374	134037574	+	1	NA	NA	NA	-41	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.025000	0.557214	
mm_169314.1	chr14	10608801	10609001	+	1	NA	NA	NA	-129652	NR_131139	547334	Mm.434606	NR_131139	ENSMUSG00000089833	Fhitos	Gm16542	fragile histidine triad gene, opposite strand	ncRNA	0.040000	0.597015	
mm_13647.1	chr2	114054235	114054435	+	1	NA	NA	NA	-61	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.010000	0.582090	
mm_17347.1	chr2	26604503	26604703	-	1	NA	NA	NA	-186	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.060000	0.646766	
mm_148824.1	chr19	6306532	6306732	+	1	NA	NA	NA	175	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.130000	0.756219	
mm_133277.1	chr16	77417526	77417726	+	1	NA	NA	NA	88298	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.005000	0.343284	
mm_42841.1	chr5	122112103	122112303	+	1	NA	NA	NA	11223	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.010000	0.552239	-55(CCCCATAAAGAG,-,0.00),-53(CCATAAAGAGTC,+,0.00)
mm_84168.1	chr9	59940909	59941109	-	1	NA	NA	NA	9070	NM_013708	23958	Mm.103641	NM_013708	ENSMUSG00000032292	Nr2e3	A930035N01Rik|PNR|RNR|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding	0.015000	0.462687	
mm_14988.1	chr2	152236636	152236836	+	1	NA	NA	NA	9896	NM_007788	12995	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0.005000	0.338308	44(GGCCCTAAAGGC,-,0.00)
mm_126917.1	chr15	91641800	91642000	+	1	NA	NA	NA	-31324	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.000000	0.462687	
mm_48560.1	chr5	143165596	143165796	-	1	NA	NA	NA	55	NR_040426	100042605	Mm.332809	NR_040424	ENSMUSG00000104529	Rbakdn	Gm3925	RB-associated KRAB zinc finger downstream neighbor (non-protein coding)	ncRNA	0.035000	0.577114	
mm_21362.1	chr2	157130642	157130842	-	1	NA	NA	NA	4480	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.000000	0.492537	
mm_125354.1	chr15	39391734	39391934	+	1	NA	NA	NA	193548	NM_053271	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.030000	0.472637	-53(TTTTTAATAGGC,+,0.00)
mm_51237.1	chr6	71543756	71543956	+	1	NA	NA	NA	2	NM_025783	66700	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	0.080000	0.631841	
mm_159213.1	chr2	122484729	122484929	+	1	NA	NA	NA	-112	NM_001085518	381417	Mm.482295	NM_001085518	ENSMUSG00000079071	Gm14085	OTTMUSG00000015615	predicted gene 14085	protein-coding	0.000000	0.358209	
mm_131985.1	chr16	25041599	25041799	+	1	NA	NA	NA	-17940	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.010000	0.353234	
mm_125985.1	chr15	76343478	76343678	+	1	NA	NA	NA	55	NM_025567	66445	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	0.140000	0.741294	
mm_72313.1	chr8	78013855	78014055	+	1	NA	NA	NA	-199387	NM_183096	73301	Mm.61243	NM_183096	ENSMUSG00000037101	Ttc29	1700031F13Rik	tetratricopeptide repeat domain 29	protein-coding	0.010000	0.532338	
mm_45071.1	chr5	43821689	43821889	-	1	NA	NA	NA	2896	NM_009763	12182	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	0.045000	0.467662	
mm_170164.1	chr17	53456094	53456294	-	1	NA	NA	NA	7127	NM_172497	211482	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	0.005000	0.477612	
mm_75629.1	chr8	64692908	64693108	-	1	NA	NA	NA	101	NM_013494	12876	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|R74677|fat	carboxypeptidase E	protein-coding	0.110000	0.716418	
mm_89789.1	chr10	102167540	102167740	+	1	NA	NA	NA	8561	NM_001162369	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.005000	0.303483	
mm_136025.1	chr16	76365020	76365220	-	1	NA	NA	NA	7929	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.015000	0.393035	
mm_42643.1	chr5	118599070	118599270	+	1	NA	NA	NA	38451	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.000000	0.348259	32(TTCTCTATAAGA,-,0.00)
mm_84567.1	chr9	68956580	68956780	-	1	NA	NA	NA	191334	NR_033299	320440	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.015000	0.437811	
mm_55944.1	chr6	85125971	85126171	-	1	NA	NA	NA	23	NM_001034902	545861	Mm.321419	NM_001034902	ENSMUSG00000072952	Gm5878	EG545861	predicted gene 5878	protein-coding	0.090000	0.651741	
mm_49279.1	chr6	17637677	17637877	+	1	NA	NA	NA	679	NM_007604	12343	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.015000	0.517413	
mm_41927.1	chr5	105696196	105696396	+	1	NA	NA	NA	-3673	NM_001122768	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.030000	0.477612	
mm_65944.1	chr7	30417310	30417510	-	1	NA	NA	NA	2444	NM_011827	23900	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	0.020000	0.502488	64(CTCCTTAAAAAA,-,0.00)
mm_95199.1	chr11	43441313	43441513	+	1	NA	NA	NA	7682	NM_198936	193116	Mm.28200	NM_148673	ENSMUSG00000020409	Slu7	AU018913|D11Ertd730e|D3Bwg0878e	SLU7 splicing factor homolog (S. cerevisiae)	protein-coding	0.035000	0.452736	-47(TTGTTTAAAGGG,-,0.00)
mm_101058.1	chr11	9039482	9039682	-	1	NA	NA	NA	9	NM_001290519	194974	Mm.79210	NM_177576	ENSMUSG00000040985	Sun3	Sunc1	Sad1 and UNC84 domain containing 3	protein-coding	0.005000	0.383085	
mm_141373.1	chr17	29007897	29008097	-	1	NA	NA	NA	-60	NM_134115	106504	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0.125000	0.761194	
mm_96865.1	chr11	70166556	70166756	+	1	NA	NA	NA	33	NM_010796	17312	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	0.015000	0.487562	
mm_119278.1	chr14	34310704	34310904	+	1	NA	NA	NA	77	NM_008133	14661	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	0.130000	0.741294	-14(CGGCTTAAAAGG,-,0.00),-12(GCTTAAAAGGGC,+,0.00)
mm_43022.1	chr5	123907528	123907728	+	1	NA	NA	NA	353	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.045000	0.597015	
mm_112995.1	chr13	21753341	21753541	+	1	NA	NA	NA	471	NM_178183	319169	Mm.370338	NM_178183	ENSMUSG00000063021	Hist1h2ak	-	histone cluster 1, H2ak	protein-coding	0.040000	0.577114	
mm_135938.1	chr16	74279363	74279563	-	1	NA	NA	NA	62604	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.005000	0.343284	84(ACTTATATACAC,+,0.00)
mm_25131.1	chr3	102262355	102262555	+	1	NA	NA	NA	50	NR_040391	319951	Mm.225196	NR_040391	ENSMUSG00000105891	A230001M10Rik	-	RIKEN cDNA A230001M10 gene	ncRNA	0.015000	0.472637	
mm_30660.1	chr4	9269250	9269450	+	1	NA	NA	NA	33	NM_028940	74438	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.030000	0.572139	
mm_161777.1	chr17	37795115	37795315	+	1	NA	NA	NA	-231	NM_146630	258623	Mm.271474	NM_146630	ENSMUSG00000045202	Olfr123	MOR256-9	olfactory receptor 123	protein-coding	0.005000	0.328358	
mm_95453.1	chr11	50376818	50377018	+	1	NA	NA	NA	-801	NM_021510	59013	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.090000	0.621891	
mm_60922.1	chr7	46846126	46846326	+	1	NA	NA	NA	422	NR_102727	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.075000	0.587065	
mm_58010.1	chr6	136518667	136518867	-	1	NA	NA	NA	-84	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.075000	0.547264	
mm_88141.1	chr10	69417474	69417674	+	1	NA	NA	NA	-64662	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.015000	0.457711	
mm_740.1	chr1	43457209	43457409	+	1	NA	NA	NA	11558	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.015000	0.393035	
mm_92444.1	chr10	77582492	77582692	-	1	NA	NA	NA	825	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.015000	0.552239	
mm_20495.1	chr2	130279541	130279741	-	1	NA	NA	NA	1615	NR_028528	100217428		NR_028528	ENSMUSG00000065272	Snord57	MBII-434	small nucleolar RNA, C/D box 57	snoRNA	0.020000	0.502488	
mm_90720.1	chr10	4432227	4432427	-	1	NA	NA	NA	25	NM_025343	66084	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	0.145000	0.726368	
mm_127884.1	chr15	8683515	8683715	-	1	NA	NA	NA	27192	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.005000	0.338308	
mm_8395.1	chr1	151428357	151428557	-	1	NA	NA	NA	-22	NM_025819	66875	Mm.290905	NM_025819	ENSMUSG00000052748	Swt1	1200016B10Rik|C1orf26	SWT1 RNA endoribonuclease homolog (S. cerevisiae)	protein-coding	0.075000	0.601990	
mm_47440.1	chr5	123181596	123181796	-	1	NA	NA	NA	990	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.010000	0.597015	
mm_96993.1	chr11	70700155	70700355	+	1	NA	NA	NA	-100	NM_001252485	103844	Mm.101581	NM_213729	ENSMUSG00000057054	Inca1	AI842396	inhibitor of CDK, cyclin A1 interacting protein 1	protein-coding	0.100000	0.661692	
mm_29661.1	chr3	122568697	122568897	-	1	NA	NA	NA	-27116	NR_106117	102465764		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.015000	0.353234	
mm_52852.1	chr6	121865636	121865836	+	1	NA	NA	NA	27195	NM_008645	17836	Mm.1311	NM_008645	ENSMUSG00000059908	Mug1	-	murinoglobulin 1	protein-coding	0.025000	0.552239	
mm_165630.1	chr3	68494118	68494318	+	1	NA	NA	NA	37	NM_001282044	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.060000	0.631841	
mm_16223.1	chr2	173137016	173137216	+	1	NA	NA	NA	12367	NR_040321	74161	Mm.208098	NR_040321	ENSMUSG00000087382	Ctcflos	1300015D01Rik|A530094K13	CCCTC-binding factor (zinc finger protein)-like, opposite strand	ncRNA	0.020000	0.542289	-27(CCTCATAAAGGG,+,0.00),-27(CCTCATAAAGGG,-,0.00)
mm_170768.1	chr2	162390676	162390876	+	1	NA	NA	NA	-37	NR_040617	77645	Mm.447752	NR_040617	ENSMUSG00000084919	Ptprtos	C330008G21Rik	protein tyrosine phosphatase, receptor type T, opposite strand	ncRNA	0.000000	0.487562	
mm_64844.1	chr7	13013787	13013987	-	1	NA	NA	NA	-4087	NM_001024699	232879	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	0.005000	0.462687	
mm_83172.1	chr9	40531367	40531567	-	1	NA	NA	NA	-75703	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.060000	0.616915	
mm_143754.1	chr17	81582541	81582741	-	1	NA	NA	NA	155746	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.010000	0.507463	
mm_157064.1	chrX	8145622	8145822	-	1	NA	NA	NA	158	NM_001166410	19652	Mm.128512	NM_016809	ENSMUSG00000031167	Rbm3	2600016C11Rik	RNA binding motif protein 3	protein-coding	0.105000	0.631841	
mm_36544.1	chr4	86669379	86669579	-	1	NA	NA	NA	580	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.010000	0.487562	
mm_110798.1	chr12	72211807	72212007	-	1	NA	NA	NA	23839	NR_104446	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.015000	0.368159	
mm_19346.1	chr2	90904830	90905030	-	1	NA	NA	NA	144	NM_025991	67136	Mm.330394	NM_025991	ENSMUSG00000005505	Kbtbd4	2510026C23Rik	kelch repeat and BTB (POZ) domain containing 4	protein-coding	0.080000	0.592040	
mm_72183.1	chr8	72322684	72322884	+	1	NA	NA	NA	3722	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.015000	0.512438	
mm_129804.1	chr15	82963723	82963923	-	1	NA	NA	NA	-4527	NR_037241	100526477		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	0.130000	0.781095	
mm_53598.1	chr6	138141559	138141759	+	1	NA	NA	NA	65	NM_001347489	56615	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.010000	0.482587	
mm_118254.1	chr13	112354125	112354325	-	1	NA	NA	NA	65707	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.010000	0.542289	
mm_24113.1	chr3	88144236	88144436	+	1	NA	NA	NA	1964	NM_001310593	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.015000	0.542289	
mm_6314.1	chr1	71597344	71597544	-	1	NA	NA	NA	40288	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.045000	0.562189	
mm_163973.1	chr14	55575608	55575808	+	1	NA	NA	NA	34	NM_026808	68680	Mm.36758	NM_026808	ENSMUSG00000022215	Fitm1	1110028A07Rik|AV010547|Cg10671|Fit1	fat storage-inducing transmembrane protein 1	protein-coding	0.030000	0.656716	
mm_124383.1	chr14	108913752	108913952	-	1	NA	NA	NA	387	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.060000	0.626866	
mm_8902.1	chr1	163289230	163289430	-	1	NA	NA	NA	24320	NM_011127	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.010000	0.402985	
mm_41760.1	chr5	102860009	102860209	+	1	NA	NA	NA	15102	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.015000	0.447761	
mm_32656.1	chr4	115088820	115089020	+	1	NA	NA	NA	212	NM_001164557	67182	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	0.025000	0.587065	-30(CCTTAAATGCCA,+,0.00)
mm_107738.1	chr12	57951122	57951322	+	1	NA	NA	NA	-260582	NM_009216	20605	Mm.278336	NM_009216	ENSMUSG00000035431	Sstr1	SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1	somatostatin receptor 1	protein-coding	0.025000	0.567164	
mm_85214.1	chr9	96889310	96889510	-	1	NA	NA	NA	64	NM_001289646	235534	Mm.233031	NM_153420	ENSMUSG00000043587	Pxylp1	9430094M07Rik|Acpl2|BB177120|C130099A20Rik	2-phosphoxylose phosphatase 1	protein-coding	0.130000	0.746269	
mm_82777.1	chr9	27155278	27155478	-	1	NA	NA	NA	43	NM_023277	83964	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	0.105000	0.666667	
mm_86732.1	chr10	19065516	19065716	+	1	NA	NA	NA	-50206	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.000000	0.427861	-99(CCTTATAGGCAG,+,0.00)
mm_8881.1	chr1	162866346	162866546	-	1	NA	NA	NA	164	NM_010231	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.015000	0.437811	
mm_125582.1	chr15	59522891	59523091	+	1	NA	NA	NA	-125663	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.025000	0.507463	
mm_62862.1	chr7	114717238	114717438	+	1	NA	NA	NA	-1305	NM_054084	116903	Mm.273838	NM_054084	ENSMUSG00000030666	Calcb	CGRP2|Calc2	calcitonin-related polypeptide, beta	protein-coding	0.005000	0.522388	
mm_10425.1	chr2	13582518	13582718	+	1	NA	NA	NA	8307	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.020000	0.383085	
mm_147895.1	chr18	65305958	65306158	-	1	NA	NA	NA	57197	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.015000	0.552239	
mm_151893.1	chr19	5798748	5798948	-	1	NA	NA	NA	-2867	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.030000	0.462687	
mm_50792.1	chr6	54039876	54040076	+	1	NA	NA	NA	44	NM_001163640	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.140000	0.741294	
mm_16697.1	chr2	6885130	6885330	-	1	NA	NA	NA	-234	NM_001160293	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.005000	0.402985	
mm_20210.1	chr2	125505968	125506168	-	1	NA	NA	NA	370	NM_007993	14118	Mm.271644	NM_007993	ENSMUSG00000027204	Fbn1	AI536462|B430209H23|Fib-1|Tsk	fibrillin 1	protein-coding	0.105000	0.676617	6(CCATTAAGACCG,+,0.00)
mm_86476.1	chr10	4709739	4709939	+	1	NA	NA	NA	-319	NM_001302531	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.010000	0.437811	
mm_79999.1	chr9	67047701	67047901	+	1	NA	NA	NA	1412	NM_001164255	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.025000	0.582090	
mm_167130.1	chr7	126777087	126777287	+	1	NA	NA	NA	212	NM_025347	66090	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee-like 3 (Drosophila)	protein-coding	0.105000	0.716418	
mm_56102.1	chr6	87459395	87459595	-	1	NA	NA	NA	30501	NM_009756	12154	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	-	bone morphogenetic protein 10	protein-coding	0.005000	0.398010	
mm_16724.1	chr2	7395819	7396019	-	1	NA	NA	NA	81	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.025000	0.412935	
mm_11694.1	chr2	35713079	35713279	+	1	NA	NA	NA	16447	NM_001290639	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.015000	0.542289	
mm_114628.1	chr13	76130098	76130298	+	1	NA	NA	NA	31464	NM_001081352	218343	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	mKIAA0372	tetratricopeptide repeat domain 37	protein-coding	0.020000	0.398010	
mm_55046.1	chr6	49036376	49036576	-	1	NA	NA	NA	-42	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.020000	0.472637	57(GCTTAAAGGGAG,+,0.00)
mm_111820.1	chr12	106444677	106444877	-	1	NA	NA	NA	2889	NR_036593	76639	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA	0.010000	0.378109	
mm_134331.1	chr16	16454976	16455176	-	1	NA	NA	NA	72335	NM_001301818	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.005000	0.318408	
mm_47936.1	chr5	135251161	135251361	-	1	NA	NA	NA	-214	NM_010246	14371	Mm.6256	NM_010246	ENSMUSG00000049551	Fzd9	mfz9	frizzled class receptor 9	protein-coding	0.145000	0.756219	-82(CACCTTTAAAGC,-,0.00),-81(ACCTTTAAAGCG,+,0.00),-80(CCTTTAAAGCGC,+,0.00)
mm_139888.1	chr17	70834850	70835050	+	1	NA	NA	NA	11827	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.050000	0.467662	
mm_132239.1	chr16	32750718	32750918	+	1	NA	NA	NA	14932	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.000000	0.427861	
mm_38322.1	chr4	137339180	137339380	-	1	NA	NA	NA	18479	NM_009861	12540	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.000000	0.482587	
mm_33613.1	chr4	132611064	132611264	+	1	NA	NA	NA	-27882	NM_210071	14050	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0.010000	0.517413	-35(CCCCATATAAGC,-,0.00),-33(CCATATAAGCGC,+,0.00)
mm_72332.1	chr8	79028234	79028434	+	1	NA	NA	NA	-103	NM_001294279	622675	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.090000	0.572139	
mm_55391.1	chr6	60403574	60403774	-	1	NA	NA	NA	33	NR_015565	208079	Mm.131226	NM_177329	ENSMUSG00000046764	A530053G22Rik	-	RIKEN cDNA A530053G22 gene	ncRNA	0.010000	0.343284	-67(TCATTTAAAAGC,-,0.00)
mm_157551.1	chrX	51681356	51681556	-	1	NA	NA	NA	146	NM_001077202	50786	Mm.252561	NM_015819	ENSMUSG00000062184	Hs6st2	6OST2	heparan sulfate 6-O-sulfotransferase 2	protein-coding	0.085000	0.671642	
mm_108957.1	chr12	102368647	102368847	+	1	NA	NA	NA	71066	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.050000	0.676617	
mm_75727.1	chr8	69134595	69134795	-	1	NA	NA	NA	6258	NM_199364	211134	Mm.409446	NM_199364	ENSMUSG00000036306	Lzts1	F37|FEZ1|PSD-Zip70	leucine zipper, putative tumor suppressor 1	protein-coding	0.000000	0.432836	
mm_136372.1	chr16	92825442	92825642	-	1	NA	NA	NA	532	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.020000	0.502488	
mm_44738.1	chr5	31180034	31180234	-	1	NA	NA	NA	10	NM_027901	71752	Mm.271923	NM_027901	ENSMUSG00000101678	Gtf3c2	1300004C11Rik|2610510G03Rik|AI225816|AU041069|TFIIIC110|mKIAA0011	general transcription factor IIIC, polypeptide 2, beta	protein-coding	0.090000	0.626866	86(GAGTTTAAAAGA,-,0.00)
mm_30390.1	chr3	152247863	152248063	-	1	NA	NA	NA	18357	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.050000	0.472637	
mm_820.1	chr1	46748019	46748219	+	1	NA	NA	NA	105390	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.000000	0.258706	
mm_168265.1	chr10	91259757	91259957	-	1	NA	NA	NA	-88238	NM_001080130	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.030000	0.467662	
mm_133352.1	chr16	84585379	84585579	+	1	NA	NA	NA	-94310	NR_040537	78023	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0.010000	0.457711	
mm_123339.1	chr14	63135552	63135752	-	1	NA	NA	NA	13190	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.035000	0.537313	
mm_63564.1	chr7	128113158	128113358	+	1	NA	NA	NA	-16310	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.015000	0.517413	
mm_95682.1	chr11	54199262	54199462	+	1	NA	NA	NA	13926	NR_045506	71056	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	0.015000	0.417910	
mm_117529.1	chr13	81783531	81783731	-	1	NA	NA	NA	339	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.070000	0.646766	
mm_26150.1	chr3	138143353	138143553	+	1	NA	NA	NA	-65	NM_001163457	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	0.080000	0.606965	
mm_52779.1	chr6	121246563	121246763	+	1	NA	NA	NA	757	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.015000	0.373134	
mm_38337.1	chr4	137706515	137706715	-	1	NA	NA	NA	-9	NR_138594	69808	Mm.437203	NR_138594		Rap1gapos	1810058N05Rik	RAP1 GTPase activating protein, opposite strand	ncRNA	0.025000	0.497512	
mm_93862.1	chr10	122985539	122985739	-	1	NA	NA	NA	85	NR_029527	387251		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.080000	0.631841	
mm_39614.1	chr5	24364714	24364914	+	1	NA	NA	NA	-5	NM_008713	18127	Mm.258415	NM_008713	ENSMUSG00000028978	Nos3	2310065A03Rik|Nos-3|eNOS|ecNOS	nitric oxide synthase 3, endothelial cell	protein-coding	0.020000	0.651741	
mm_68044.1	chr7	101362778	101362978	-	1	NA	NA	NA	14809	NM_001040111	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.010000	0.497512	
mm_14199.1	chr2	127208301	127208501	+	1	NA	NA	NA	-3	NM_177214	320632	Mm.215860	NM_177214	ENSMUSG00000003660	Snrnp200	A330064G03Rik|Ascc3l1|BC011390|HELIC2|U5-200-KD|U5-200KD	small nuclear ribonucleoprotein 200 (U5)	protein-coding	0.095000	0.587065	
mm_157290.1	chrX	20861431	20861631	-	1	NA	NA	NA	1651	NR_049190	100885829		NR_049190	ENSMUSG00000093408	Mir5617	Gm25192|mir-5617|mmu-mir-5617	microRNA 5617	ncRNA	0.020000	0.577114	
mm_99215.1	chr11	101026331	101026531	+	1	NA	NA	NA	-3909	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.005000	0.338308	
mm_12110.1	chr2	61592997	61593197	+	1	NA	NA	NA	0	NM_001164072	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.085000	0.661692	
mm_117496.1	chr13	78198729	78198929	-	1	NA	NA	NA	44	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.095000	0.731343	
mm_127402.1	chr15	101224124	101224324	+	1	NA	NA	NA	17	NM_019518	56149	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding	0.100000	0.701493	-34(GAGTCTATAAAG,-,0.00)
mm_150125.1	chr19	30003727	30003927	+	1	NA	NA	NA	37	NM_025741	66745	Mm.158128	NM_025741	ENSMUSG00000024815	Trpd52l3	4931412G03Rik	tumor protein D52-like 3	protein-coding	0.040000	0.621891	
mm_147209.1	chr18	37935340	37935540	-	1	NA	NA	NA	36	NM_001305980	13367	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0.125000	0.716418	
mm_117693.1	chr13	94294902	94295102	-	1	NA	NA	NA	-9171	NM_001346609	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.010000	0.537313	
mm_79156.1	chr9	47795904	47796104	+	1	NA	NA	NA	22204	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.015000	0.527363	
mm_27572.1	chr3	58691912	58692112	-	1	NA	NA	NA	376	NM_009174	20439	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	seven in absentia 2	protein-coding	0.155000	0.776119	
mm_873.1	chr1	52155023	52155223	+	1	NA	NA	NA	35501	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.015000	0.502488	
mm_372.1	chr1	33990914	33991114	+	1	NA	NA	NA	-20811	NM_133833	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.005000	0.467662	
mm_160058.1	chr7	4546498	4546698	-	1	NA	NA	NA	-31	NM_016908	53420	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	0.025000	0.577114	
mm_140045.1	chr17	74489526	74489726	+	1	NA	NA	NA	133	NM_026417	67864	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	0.130000	0.766169	
mm_141176.1	chr17	26841381	26841581	-	1	NA	NA	NA	84	NM_008700	18091	Mm.41974	NM_008700	ENSMUSG00000015579	Nkx2-5	Csx|Nkx-2.5|Nkx2.5|tinman	NK2 homeobox 5	protein-coding	0.065000	0.721393	
mm_97547.1	chr11	78926462	78926662	+	1	NA	NA	NA	1271	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.005000	0.407960	
mm_96441.1	chr11	67344693	67344893	+	1	NA	NA	NA	17690	NM_001081250	544791	Mm.461064	NM_001081250	ENSMUSG00000060180	Myh13	MyHC-eo	myosin, heavy polypeptide 13, skeletal muscle	protein-coding	0.015000	0.537313	
mm_9091.1	chr1	168675782	168675982	-	1	NA	NA	NA	185239	NR_105766	102465178		NR_105766	ENSMUSG00000098407	Mir6348	Gm27412|mmu-mir-6348	microRNA 6348	ncRNA	0.020000	0.517413	
mm_106221.1	chr11	117078013	117078213	-	1	NA	NA	NA	765	NR_105853	102465258		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.025000	0.517413	
mm_138992.1	chr17	45539553	45539753	+	1	NA	NA	NA	10024	NM_001013749	210573	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0.050000	0.567164	
mm_153260.1	chr19	36919514	36919714	-	1	NA	NA	NA	-15	NM_028263	72514	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0.020000	0.442786	
mm_46629.1	chr5	108449000	108449200	-	1	NA	NA	NA	-209	NM_172883	243197	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7	major facilitator superfamily domain containing 7A	protein-coding	0.025000	0.487562	50(ACCTCTAAAAGG,-,0.00),51(CCTCTAAAAGGG,+,0.00)
mm_69794.1	chr7	141117715	141117915	-	1	NA	NA	NA	-9	NM_178381	71345	Mm.235813	NM_178381	ENSMUSG00000054662	Ano9	5430425C04Rik|Tmem16j|Tp53i5|Trp53i5	anoctamin 9	protein-coding	0.025000	0.606965	
mm_149941.1	chr19	27312799	27312999	+	1	NA	NA	NA	-9720	NM_183179	240595	Mm.269759	NM_183179	ENSMUSG00000047298	Kcnv2	KV11.1	potassium channel, subfamily V, member 2	protein-coding	0.020000	0.447761	41(GGCTATAAAAGG,-,0.00)
mm_9826.1	chr1	182517386	182517586	-	1	NA	NA	NA	-3	NM_009794	12334	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.150000	0.796020	
mm_140621.1	chr17	11973457	11973657	-	1	NA	NA	NA	-90368	NR_045808	52027	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	0.015000	0.532338	
mm_125550.1	chr15	58648409	58648609	+	1	NA	NA	NA	174918	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.015000	0.477612	-8(GCTCATATAGCA,+,0.00)
mm_49724.1	chr6	34662079	34662279	+	1	NA	NA	NA	-47265	NM_145575	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.005000	0.378109	
mm_118688.1	chr14	22122745	22122945	+	1	NA	NA	NA	103133	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.000000	0.353234	
mm_43779.1	chr5	142357941	142358141	+	1	NA	NA	NA	-43456	NM_199068	17425	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf	forkhead box K1	protein-coding	0.010000	0.457711	
mm_92596.1	chr10	80101032	80101232	-	1	NA	NA	NA	1570	NM_183426	216161	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch homolog 2 (Drosophila)	protein-coding	0.050000	0.651741	
mm_78646.1	chr9	40321645	40321845	+	1	NA	NA	NA	-11727	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.010000	0.512438	
mm_41143.1	chr5	87908668	87908868	+	1	NA	NA	NA	-11	NM_001305431	494497	Mm.332472	NM_001305431		BC037156	FDC-SP	cDNA sequence BC037156	protein-coding	0.005000	0.462687	-36(GTGTATAAAAGA,-,0.00)
mm_43274.1	chr5	130449306	130449506	+	1	NA	NA	NA	614	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.100000	0.691542	
mm_113391.1	chr13	33040179	33040379	+	1	NA	NA	NA	12865	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	0.005000	0.368159	
mm_144951.1	chr18	37808597	37808797	+	1	NA	NA	NA	2287	NM_033581	93706	Mm.247203	NM_033581	ENSMUSG00000102918	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding	0.045000	0.517413	
mm_37457.1	chr4	123442788	123442988	-	1	NA	NA	NA	-30977	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.005000	0.348259	15(GCTTATATACAT,+,0.00)
mm_89124.1	chr10	84917182	84917382	+	1	NA	NA	NA	-331	NM_001013441	237422	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0.050000	0.522388	
mm_64750.1	chr7	4792227	4792427	-	1	NA	NA	NA	-638	NM_009081	19943	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	0.005000	0.383085	39(TTCTTTTTAAGC,-,0.00)
mm_29237.1	chr3	107215856	107216056	-	1	NA	NA	NA	5776	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.005000	0.492537	
mm_137167.1	chr17	23808042	23808242	+	1	NA	NA	NA	4955	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.015000	0.452736	
mm_168916.1	chr12	57941359	57941559	-	1	NA	NA	NA	-270345	NM_009216	20605	Mm.278336	NM_009216	ENSMUSG00000035431	Sstr1	SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1	somatostatin receptor 1	protein-coding	0.025000	0.527363	
mm_82060.1	chr9	122686699	122686899	+	1	NA	NA	NA	3923	NR_029819	387156		NR_029819	ENSMUSG00000065414	Mir138-1	Mirn138|Mirn138-1|mir-138-1	microRNA 138-1	ncRNA	0.010000	0.472637	
mm_104452.1	chr11	95041169	95041369	-	1	NA	NA	NA	102	NM_133667	18604	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	0.105000	0.701493	
mm_64882.1	chr7	15873091	15873291	-	1	NA	NA	NA	-806	NM_001113330	12951	Mm.441911	NM_007770	ENSMUSG00000041578	Crx	Crx1	cone-rod homeobox	protein-coding	0.000000	0.402985	-73(AGCTATATAAGA,-,0.00)
mm_165392.1	chr2	131855545	131855745	-	1	NA	NA	NA	4102	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	0.030000	0.467662	
mm_1014.1	chr1	58728619	58728819	+	1	NA	NA	NA	-1833	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.010000	0.512438	
mm_36509.1	chr4	83486297	83486497	-	1	NA	NA	NA	51	NM_001290527	101739	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	0.165000	0.776119	
mm_56922.1	chr6	119417405	119417605	-	1	NA	NA	NA	-22	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.030000	0.512438	
mm_153491.1	chr19	41324240	41324440	-	1	NA	NA	NA	-60336	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.005000	0.452736	
mm_88228.1	chr10	70520384	70520584	+	1	NA	NA	NA	72328	NM_001162846	70911	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding	0.050000	0.532338	
mm_89501.1	chr10	94035989	94036189	+	1	NA	NA	NA	88	NM_053072	13998	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	0.175000	0.736318	
mm_107953.1	chr12	72441784	72441984	+	1	NA	NA	NA	18	NM_030070	78257	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	0.065000	0.646766	
mm_127353.1	chr15	100619775	100619975	+	1	NA	NA	NA	4213	NM_011873	23994	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0.000000	0.378109	
mm_26735.1	chr3	5576125	5576325	-	1	NA	NA	NA	23	NM_001163301	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.090000	0.611940	
mm_24666.1	chr3	94487642	94487842	+	1	NA	NA	NA	5020	NR_110353	78784	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.020000	0.611940	
mm_64270.1	chr7	141805536	141805736	+	1	NA	NA	NA	16625	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.020000	0.542289	
mm_44413.1	chr5	17854155	17854355	-	1	NA	NA	NA	-4463	NM_001159556	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.010000	0.477612	
mm_21305.1	chr2	157079037	157079237	-	1	NA	NA	NA	128	NM_001164663	320706	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.175000	0.815920	
mm_84111.1	chr9	58370324	58370524	-	1	NA	NA	NA	-55	NM_028854	74286	Mm.252761	NM_028854	ENSMUSG00000036244	Tbc1d21	1700095K08Rik|MgcRabGAP	TBC1 domain family, member 21	protein-coding	0.000000	0.497512	10(TCTCTTAAAAGG,-,0.00)
mm_94769.1	chr11	21239068	21239268	+	1	NA	NA	NA	136	NM_001290628	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.155000	0.825871	
mm_81458.1	chr9	109833122	109833322	+	1	NA	NA	NA	428	NM_018757	54369	Mm.12951	NM_018757	ENSMUSG00000032478	Nme6	nm23-M6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding	0.015000	0.517413	
mm_141801.1	chr17	34477205	34477405	-	1	NA	NA	NA	-1368	NM_030746	632126	Mm.484958	NM_030746	ENSMUSG00000058435	Btnl4	Btn3a3|EG632126|NG11	butyrophilin-like 4	protein-coding	0.010000	0.522388	
mm_84986.1	chr9	86464822	86465022	-	1	NA	NA	NA	-6	NM_027394	70348	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	0.110000	0.706468	
mm_111325.1	chr12	86469920	86470120	-	1	NA	NA	NA	48376	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.040000	0.517413	
mm_22927.1	chr3	31121599	31121799	+	1	NA	NA	NA	26641	NM_001039090	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.000000	0.298507	68(TTGTTTAAAAGG,-,0.00)
mm_51353.1	chr6	72557239	72557439	+	1	NA	NA	NA	7692	NM_001271395	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.020000	0.452736	
mm_75850.1	chr8	70650325	70650525	-	1	NA	NA	NA	9313	NM_023217	66522	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0.010000	0.537313	
mm_18347.1	chr2	58159102	58159302	-	1	NA	NA	NA	920	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.000000	0.452736	
mm_155471.1	chrX	73640023	73640223	+	1	NA	NA	NA	682	NM_029352	75590	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	0.060000	0.636816	
mm_110832.1	chr12	72664686	72664886	-	1	NA	NA	NA	42	NM_025522	66375	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.090000	0.671642	
mm_144754.1	chr18	35726885	35727085	+	1	NA	NA	NA	-4	NM_001033168	73449	Mm.379225	NM_001033168	ENSMUSG00000073598	1700066B19Rik	-	RIKEN cDNA 1700066B19 gene	protein-coding	0.025000	0.592040	
mm_24544.1	chr3	93293076	93293276	+	1	NA	NA	NA	-26573	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.005000	0.402985	
mm_120078.1	chr14	57537391	57537591	+	1	NA	NA	NA	12662	NM_145837	239114	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	0.015000	0.497512	
mm_163879.1	chr14	19419583	19419783	-	1	NA	NA	NA	182904	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.008264	0.352459	
mm_24057.1	chr3	87914968	87915168	+	1	NA	NA	NA	-4476	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.000000	0.552239	
mm_88844.1	chr10	80928998	80929198	+	1	NA	NA	NA	-993	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.045000	0.527363	
mm_29883.1	chr3	131112045	131112245	-	1	NA	NA	NA	-646	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.115000	0.736318	
mm_8514.1	chr1	154726609	154726809	-	1	NA	NA	NA	-789	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.095000	0.666667	
mm_80881.1	chr9	99139422	99139622	+	1	NA	NA	NA	689	NM_029094	74769	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol 3-kinase, catalytic, beta polypeptide	protein-coding	0.055000	0.532338	
mm_119631.1	chr14	51253775	51253975	+	1	NA	NA	NA	2237	NM_053113	93726	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	0.000000	0.368159	
mm_47613.1	chr5	125140808	125141008	-	1	NA	NA	NA	38306	NM_001253905	20602	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.040000	0.666667	
mm_47243.1	chr5	121527165	121527365	-	1	NA	NA	NA	-5570	NM_172126	280668	Mm.1453	NM_172126	ENSMUSG00000072647	Adam1a	Adam1|Ftna	a disintegrin and metallopeptidase domain 1a	protein-coding	0.025000	0.542289	
mm_1246.1	chr1	62798305	62798505	+	1	NA	NA	NA	-3673	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.000000	0.472637	
mm_163884.1	chr14	23384340	23384540	+	1	NA	NA	NA	-289869	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA	0.005000	0.497512	
mm_45669.1	chr5	77211298	77211498	-	1	NA	NA	NA	73	NM_183284	69982	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0.040000	0.611940	
mm_144462.1	chr18	23497421	23497621	+	1	NA	NA	NA	39	NM_001285810	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.015000	0.462687	
mm_9340.1	chr1	172027191	172027391	-	1	NA	NA	NA	4	NM_033509	93840	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	vang-like 2 (van gogh, Drosophila)	protein-coding	0.055000	0.731343	
mm_56032.1	chr6	86619996	86620196	-	1	NA	NA	NA	-8078	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.015000	0.527363	83(TGCCTTTAAGGG,-,0.00),84(GCCTTTAAGGGT,+,0.00),85(CCTTTAAGGGTC,+,0.00)
mm_3780.1	chr1	156615818	156616018	+	1	NA	NA	NA	57131	NM_001136104	11352	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0.010000	0.507463	
mm_89363.1	chr10	88437386	88437586	+	1	NA	NA	NA	-22101	NM_011517	20962	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	0.020000	0.407960	78(ATCCTTATAAGG,-,0.00),80(CCTTATAAGGTG,+,0.00)
mm_15043.1	chr2	152829367	152829567	+	1	NA	NA	NA	1250	NM_001289716	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.040000	0.547264	
mm_56532.1	chr6	99545714	99545914	-	1	NA	NA	NA	-24821	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.010000	0.318408	
mm_27076.1	chr3	28816149	28816349	-	1	NA	NA	NA	10738	NM_026517	68028	Mm.371630	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0.010000	0.567164	-55(GCCTTAAGACCC,+,0.00)
mm_57065.1	chr6	122570758	122570958	-	1	NA	NA	NA	17049	NM_009645	11628	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.010000	0.472637	
mm_107812.1	chr12	65112997	65113197	+	1	NA	NA	NA	37491	NM_178912	104806	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	0.005000	0.482587	
mm_45310.1	chr5	65428302	65428502	-	1	NA	NA	NA	7440	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.010000	0.457711	-55(CCTTTTATGCCC,+,0.00)
mm_165907.1	chr4	53142534	53142734	-	1	NA	NA	NA	17261	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.005000	0.398010	
mm_59130.1	chr7	19965364	19965564	+	1	NA	NA	NA	52	NM_027839	71601	Mm.98097	NM_027839	ENSMUSG00000070777	Ceacam20	9130012D09Rik	carcinoembryonic antigen-related cell adhesion molecule 20	protein-coding	0.005000	0.572139	
mm_36580.1	chr4	88032714	88032914	-	1	NA	NA	NA	593	NM_027326	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.120000	0.681592	
mm_29636.1	chr3	121814705	121814905	-	1	NA	NA	NA	410	NM_008991	19299	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.105000	0.661692	
mm_124538.1	chr14	122461517	122461717	-	1	NA	NA	NA	4041	NM_022987	65100	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	0.010000	0.417910	
mm_60926.1	chr7	46847062	46847262	+	1	NA	NA	NA	80	NM_001136069	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.045000	0.577114	
mm_134453.1	chr16	18410689	18410889	-	1	NA	NA	NA	2705	NM_001111063	12846	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.015000	0.532338	
mm_79991.1	chr9	67032717	67032917	+	1	NA	NA	NA	11054	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.040000	0.597015	
mm_124915.1	chr15	11966986	11967186	+	1	NA	NA	NA	24	NR_040447	73339	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	0.020000	0.512438	
mm_147609.1	chr18	56973962	56974162	-	1	NA	NA	NA	1317	NM_029909	77422	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	0.000000	0.442786	
mm_102623.1	chr11	62494704	62494904	-	1	NA	NA	NA	36344	NM_001039536	327942	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.015000	0.552239	
mm_63408.1	chr7	127333514	127333714	+	1	NA	NA	NA	11700	NM_146202	233890	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0.010000	0.542289	
mm_140285.1	chr17	85090584	85090784	+	1	NA	NA	NA	-16	NM_028576	73582	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	0.075000	0.666667	
mm_124930.1	chr15	12204925	12205125	+	1	NA	NA	NA	-69	NM_172958	268783	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.145000	0.776119	
mm_42910.1	chr5	122643831	122644031	+	1	NA	NA	NA	20	NM_001038887	18439	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.030000	0.567164	
mm_127099.1	chr15	97791102	97791302	+	1	NA	NA	NA	6837	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.025000	0.537313	
mm_137709.1	chr17	29099343	29099543	+	1	NA	NA	NA	5674	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.030000	0.507463	
mm_5518.1	chr1	37691425	37691625	-	1	NA	NA	NA	28286	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.020000	0.487562	21(TGCTTTATAAGT,-,0.00)
mm_52333.1	chr6	109874855	109875055	+	1	NA	NA	NA	-770557	NM_001346640	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.025000	0.492537	-33(GAGTATAAATAG,-,0.00)
mm_13074.1	chr2	91182098	91182298	+	1	NA	NA	NA	849	NM_001177719	228355	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0.030000	0.557214	
mm_58377.1	chr6	149101448	149101648	-	1	NA	NA	NA	132	NM_177192	320560	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|ENSMUSG00000072657|Gm17524	DENN/MADD domain containing 5B	protein-coding	0.185000	0.796020	
mm_31959.1	chr4	86874892	86875092	+	1	NA	NA	NA	578	NM_139306	230379	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0.020000	0.477612	
mm_114261.1	chr13	56810340	56810540	+	1	NA	NA	NA	85349	NM_001302372	26946	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding	0.045000	0.577114	
mm_16306.1	chr2	174289788	174289988	+	1	NA	NA	NA	5548	NR_002846	56802	Mm.125770	NR_002846	ENSMUSG00000086537	Nespas	Gnas-as|Nespos	neuroendocrine secretory protein antisense	ncRNA	0.010000	0.472637	
mm_96085.1	chr11	60139973	60140173	+	1	NA	NA	NA	-9	NM_001037764	19377	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.115000	0.701493	
mm_91179.1	chr10	20839160	20839360	-	1	NA	NA	NA	-113287	NM_026203	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.005000	0.407960	
mm_148983.1	chr19	8591077	8591277	+	1	NA	NA	NA	-77	NM_001164634	19879	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	0.035000	0.582090	
mm_55493.1	chr6	69607338	69607538	-	1	NA	NA	NA	-280264	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.527363	
mm_153979.1	chr19	47864684	47864884	-	1	NA	NA	NA	-761	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.005000	0.388060	
mm_99225.1	chr11	101044981	101045181	+	1	NA	NA	NA	14741	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.010000	0.348259	19(GCATATATACAC,+,0.00)
mm_119574.1	chr14	50769106	50769306	+	1	NA	NA	NA	16314	NM_177625	219022	Mm.276362	NM_177625	ENSMUSG00000006288	Ttc5	-	tetratricopeptide repeat domain 5	protein-coding	0.025000	0.447761	
mm_49179.1	chr6	15125387	15125587	+	1	NA	NA	NA	-60019	NM_212435	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.005000	0.442786	
mm_10283.1	chr2	10080509	10080709	+	1	NA	NA	NA	-3	NM_025280	16588	Mm.35498	NM_025280	ENSMUSG00000037262	Kin	Kin17	Kin17 DNA and RNA binding protein	protein-coding	0.080000	0.601990	
mm_120024.1	chr14	55768732	55768932	+	1	NA	NA	NA	2870	NM_008519	16995	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	0.010000	0.492537	
mm_135376.1	chr16	44138915	44139115	-	1	NA	NA	NA	4	NM_007508	11964	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.060000	0.631841	
mm_90154.1	chr10	118253046	118253246	+	1	NA	NA	NA	41892	NM_054079	116849	Mm.213193	NM_054079	ENSMUSG00000090461	Iltifb	IL-22b|IL-TIFb|Il22b	interleukin 10-related T cell-derived inducible factor beta	protein-coding	0.035000	0.532338	
mm_151587.1	chr19	61227659	61227859	+	1	NA	NA	NA	659	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.095000	0.701493	
mm_169293.1	chr1	40194999	40195199	+	1	NA	NA	NA	-29981	NM_008362	16177	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.055000	0.512438	
mm_100892.1	chr11	6065646	6065846	-	1	NA	NA	NA	2	NM_001174054	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	0.195000	0.815920	
mm_7398.1	chr1	118388775	118388975	-	1	NA	NA	NA	-183	NM_001293300	76707	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	0.075000	0.547264	
mm_115563.1	chr13	9764490	9764690	-	1	NA	NA	NA	-120	NM_001347472	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.140000	0.736318	
mm_118396.1	chr13	119353112	119353312	-	1	NA	NA	NA	55799	NM_008710	18115	Mm.132584	NM_008710	ENSMUSG00000025453	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.005000	0.512438	
mm_124238.1	chr14	101477316	101477516	-	1	NA	NA	NA	131775	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.010000	0.497512	
mm_71636.1	chr8	57489524	57489724	+	1	NA	NA	NA	1661	NR_126555	78353	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	0.005000	0.472637	
mm_42726.1	chr5	120613048	120613248	+	1	NA	NA	NA	18	NM_028041	71990	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0.120000	0.706468	-33(GGGTCTAAGAGC,-,0.00)
mm_80230.1	chr9	72669944	72670144	+	1	NA	NA	NA	7697	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.035000	0.472637	
mm_118753.1	chr14	22365243	22365443	+	1	NA	NA	NA	177455	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.010000	0.363184	
mm_121175.1	chr14	103037290	103037490	+	1	NA	NA	NA	-3587	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.010000	0.412935	
mm_15734.1	chr2	164237105	164237305	+	1	NA	NA	NA	1136	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.000000	0.393035	
mm_100886.1	chr11	6028948	6029148	-	1	NA	NA	NA	36700	NM_001174054	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	0.005000	0.567164	
mm_111305.1	chr12	85747574	85747774	-	1	NA	NA	NA	1135	NM_145447	217721	Mm.301076	NM_145447	ENSMUSG00000034258	Mfsd7c	CCT|Flvcr2	major facilitator superfamily domain containing 7C	protein-coding	0.015000	0.502488	
mm_75947.1	chr8	71591954	71592154	-	1	NA	NA	NA	-130	NM_025396	66171	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	0.100000	0.666667	
mm_54341.1	chr6	30669347	30669547	-	1	NA	NA	NA	24302	NM_031998	83922	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	0.020000	0.512438	
mm_6012.1	chr1	59013973	59014173	-	1	NA	NA	NA	40502	NM_172656	227154	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	0.010000	0.323383	
mm_6379.1	chr1	72700450	72700650	-	1	NA	NA	NA	14	NM_176980	319695	Mm.249056	NM_176980	ENSMUSG00000039342	Ankar	4932422E22Rik	ankyrin and armadillo repeat containing	protein-coding	0.040000	0.517413	
mm_116809.1	chr13	54303404	54303604	-	1	NA	NA	NA	-67845	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.050000	0.651741	
mm_70251.1	chr8	3485633	3485833	+	1	NA	NA	NA	-7405	NM_080461	140482	Mm.299073	NM_080461	ENSMUSG00000047264	Zfp358	Zfend	zinc finger protein 358	protein-coding	0.015000	0.452736	
mm_139236.1	chr17	47732860	47733060	+	1	NA	NA	NA	-4077	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.020000	0.592040	
mm_119449.1	chr14	46884481	46884681	+	1	NA	NA	NA	1616	NM_001037221	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.045000	0.442786	
mm_18171.1	chr2	45109945	45110145	-	1	NA	NA	NA	232	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.075000	0.616915	
mm_111241.1	chr12	84772989	84773189	-	1	NA	NA	NA	23	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.090000	0.631841	
mm_6050.1	chr1	60097557	60097757	-	1	NA	NA	NA	250	NM_021312	57750	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	0.060000	0.507463	
mm_38221.1	chr4	135973427	135973627	-	1	NA	NA	NA	-933	NM_011942	26394	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	0.015000	0.517413	
mm_82602.1	chr9	21359325	21359525	-	1	NA	NA	NA	-8446	NM_001042708	16201	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.025000	0.492537	
mm_46384.1	chr5	103990141	103990341	-	1	NA	NA	NA	-12853	NM_001163486	243168	Mm.284944	NM_198030	ENSMUSG00000034528	Hsd17b13	AI047820|PAN1B-like|Pan1b	hydroxysteroid (17-beta) dehydrogenase 13	protein-coding	0.060000	0.616915	
mm_111824.1	chr12	106716243	106716443	-	1	NA	NA	NA	-19	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.020000	0.487562	
mm_151325.1	chr19	55893189	55893389	+	1	NA	NA	NA	-2032	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.020000	0.412935	
mm_151948.1	chr19	5801021	5801221	-	1	NA	NA	NA	1551	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.040000	0.582090	
mm_106488.1	chr11	120235784	120235984	-	1	NA	NA	NA	2937	NM_198423	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.040000	0.557214	
mm_62624.1	chr7	107567578	107567778	+	1	NA	NA	NA	245	NM_172907	244198	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	0.025000	0.512438	
mm_25428.1	chr3	107885837	107886037	+	1	NA	NA	NA	8707	NM_133867	99662	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0.020000	0.358209	
mm_125208.1	chr15	33861086	33861286	+	1	NA	NA	NA	-173303	NM_001085421	239364	Mm.60794	NM_001085421	ENSMUSG00000038984	Tspyl5	6330530B20|E130308C19Rik	testis-specific protein, Y-encoded-like 5	protein-coding	0.000000	0.437811	
mm_77826.1	chr9	3532304	3532504	+	1	NA	NA	NA	55	NM_001033322	234889	Mm.91240	NM_001033322	ENSMUSG00000041624	Gucy1a2	6330407I18Rik|A230060L24Rik	guanylate cyclase 1, soluble, alpha 2	protein-coding	0.080000	0.691542	
mm_126175.1	chr15	78571705	78571905	+	1	NA	NA	NA	978	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.045000	0.582090	
mm_160715.1	chr10	61418104	61418304	+	1	NA	NA	NA	232	NM_013611	18119	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0.030000	0.582090	
mm_153.1	chr1	11414198	11414398	+	1	NA	NA	NA	193	NM_001160371	320492	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding	0.105000	0.671642	
mm_111117.1	chr12	80967887	80968087	-	1	NA	NA	NA	92	NM_011387	20493	Mm.486361	NM_011387	ENSMUSG00000021135	Slc10a1	Ntcp	solute carrier family 10 (sodium/bile acid cotransporter family), member 1	protein-coding	0.020000	0.532338	
mm_87919.1	chr10	62504034	62504234	+	1	NA	NA	NA	3621	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.030000	0.552239	
mm_91233.1	chr10	22302466	22302666	-	1	NA	NA	NA	-4154	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.005000	0.442786	
mm_120108.1	chr14	59201867	59202067	+	1	NA	NA	NA	739	NM_027764	71330	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	0.020000	0.383085	
mm_135525.1	chr16	48994002	48994202	-	1	NA	NA	NA	10	NM_001110017	224170	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	0.065000	0.676617	
mm_4699.1	chr1	180849038	180849238	+	1	NA	NA	NA	-2013	NM_145943	208768	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.000000	0.457711	
mm_5088.1	chr1	4496422	4496622	-	1	NA	NA	NA	832	NM_001289464	20671	Mm.279103	NM_011441	ENSMUSG00000025902	Sox17	-	SRY (sex determining region Y)-box 17	protein-coding	0.040000	0.537313	
mm_109741.1	chr12	117466104	117466304	+	1	NA	NA	NA	-50275	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.025000	0.517413	
mm_115368.1	chr13	112993790	112993990	+	1	NA	NA	NA	22	NM_001037914	622408	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0.105000	0.706468	
mm_141979.1	chr17	35162922	35163122	-	1	NA	NA	NA	1855	NM_001199044	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.045000	0.552239	
mm_127705.1	chr15	102991067	102991267	+	1	NA	NA	NA	628	NM_010466	15426	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.050000	0.552239	-95(CCCTTTATGGGG,+,0.00)
mm_119187.1	chr14	32321961	32322161	+	1	NA	NA	NA	42	NM_001081130	239017	Mm.318302	NM_001081130	ENSMUSG00000021913	Ogdhl	-	oxoglutarate dehydrogenase-like	protein-coding	0.150000	0.706468	
mm_144849.1	chr18	36635456	36635656	+	1	NA	NA	NA	-28504	NM_201256	108112	Mm.24790	NM_201256	ENSMUSG00000090264	Eif4ebp3	4e-bp3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding	0.000000	0.353234	
mm_2843.1	chr1	131638259	131638459	+	1	NA	NA	NA	45	NM_007799	13034	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	0.025000	0.462687	
mm_30033.1	chr3	135691194	135691394	-	1	NA	NA	NA	253	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.205000	0.880597	
mm_75802.1	chr8	70139056	70139256	-	1	NA	NA	NA	41	NM_011266	19727	Mm.161167	NM_011266	ENSMUSG00000036120	Rfxank	Tvl1	regulatory factor X-associated ankyrin-containing protein	protein-coding	0.050000	0.522388	-50(CAGTCTTAAAGC,-,0.00)
mm_29192.1	chr3	106760377	106760577	-	1	NA	NA	NA	29672	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.000000	0.402985	-32(TTTTTTAAAGAG,+,0.00)
mm_60732.1	chr7	45434752	45434952	+	1	NA	NA	NA	13	NM_030678	14936	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0.080000	0.676617	
mm_160676.1	chr10	11281691	11281891	+	1	NA	NA	NA	204	NM_001168297	71865	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0.100000	0.686567	
mm_10947.1	chr2	25557792	25557992	+	1	NA	NA	NA	-8	NM_021519	59022	Mm.29945	NM_021519	ENSMUSG00000015092	Edf1	0610008L11Rik|AA409425	endothelial differentiation-related factor 1	protein-coding	0.145000	0.736318	
mm_132231.1	chr16	32736172	32736372	+	1	NA	NA	NA	386	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.010000	0.582090	
mm_33114.1	chr4	124738938	124739138	+	1	NA	NA	NA	-2812	NM_008385	16330	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	0.000000	0.497512	
mm_35499.1	chr4	41047908	41048108	-	1	NA	NA	NA	128	NM_007473	11832	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	0.015000	0.572139	
mm_114980.1	chr13	97251267	97251467	+	1	NA	NA	NA	10262	NM_007930	13803	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.020000	0.457711	
mm_152290.1	chr19	9000035	9000235	-	1	NA	NA	NA	10851	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.015000	0.557214	
mm_74318.1	chr8	126828280	126828480	+	1	NA	NA	NA	117541	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.015000	0.502488	
mm_65922.1	chr7	30232096	30232296	-	1	NA	NA	NA	122	NM_027259	69920	Mm.440028	NM_027259	ENSMUSG00000019738	Polr2i	2810002B19Rik	polymerase (RNA) II (DNA directed) polypeptide I	protein-coding	0.075000	0.502488	
mm_29827.1	chr3	129724991	129725191	-	1	NA	NA	NA	-5	NM_001329594	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.060000	0.597015	
mm_119764.1	chr14	54173431	54173631	+	1	NA	NA	NA	80398	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.532338	
mm_41189.1	chr5	88327795	88327995	+	1	NA	NA	NA	10583	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.000000	0.398010	
mm_345.1	chr1	30950160	30950360	+	1	NA	NA	NA	-505	NM_011200	19243	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	0.035000	0.492537	
mm_30180.1	chr3	144231949	144232149	-	1	NA	NA	NA	-26794	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.015000	0.497512	
mm_116148.1	chr13	29984110	29984310	-	1	NA	NA	NA	181	NM_001289920	13557	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.105000	0.771144	
mm_76289.1	chr8	84200640	84200840	-	1	NA	NA	NA	-7778	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.085000	0.706468	
mm_14176.1	chr2	126735875	126736075	+	1	NA	NA	NA	28647	NM_019729	84092	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	0.005000	0.452736	
mm_149065.1	chr19	8841089	8841289	+	1	NA	NA	NA	686	NM_001290823	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.025000	0.621891	
mm_110597.1	chr12	56535141	56535341	-	1	NA	NA	NA	1667	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.065000	0.532338	
mm_62375.1	chr7	100706582	100706782	+	1	NA	NA	NA	-20	NM_178764	319604	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0.075000	0.686567	
mm_15018.1	chr2	152626902	152627102	+	1	NA	NA	NA	-6	NM_009047	19700	Mm.8752	NM_009047	ENSMUSG00000000359	Rem1	E030011C07Rik|Ras|Rem	rad and gem related GTP binding protein 1	protein-coding	0.095000	0.701493	
mm_88597.1	chr10	79781057	79781257	+	1	NA	NA	NA	3883	NM_031380	83554	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0.060000	0.631841	
mm_151371.1	chr19	55932212	55932412	+	1	NA	NA	NA	36991	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.020000	0.383085	
mm_48510.1	chr5	142821593	142821793	-	1	NA	NA	NA	-4306	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.055000	0.656716	
mm_26241.1	chr3	141465446	141465646	+	1	NA	NA	NA	-18	NM_009472	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.045000	0.636816	
mm_48397.1	chr5	140117948	140118148	-	1	NA	NA	NA	203504	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.000000	0.492537	
mm_166207.1	chr5	44799494	44799694	-	1	NA	NA	NA	152	NM_001347349	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0.030000	0.542289	
mm_143614.1	chr17	78736561	78736761	-	1	NA	NA	NA	-101	NM_011500	268980	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	0.120000	0.761194	
mm_77746.1	chr8	127440040	127440240	-	1	NA	NA	NA	140488	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.025000	0.502488	
mm_140476.1	chr17	94864804	94865004	+	1	NA	NA	NA	-14	NM_001024731	100044193		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	0.035000	0.567164	
mm_4691.1	chr1	180726238	180726438	+	1	NA	NA	NA	295	NM_133225	170760	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.110000	0.751244	
mm_5762.1	chr1	46893034	46893234	-	1	NA	NA	NA	-39625	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.005000	0.353234	41(CAGCATAAAAAG,-,0.00),72(AGGTTTAAAAAG,-,0.00)
mm_44769.1	chr5	31699303	31699503	-	1	NA	NA	NA	1353	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.000000	0.363184	
mm_5981.1	chr1	58392957	58393157	-	1	NA	NA	NA	-79	NM_025824	66882	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.095000	0.686567	
mm_146599.1	chr18	9450029	9450229	-	1	NA	NA	NA	21	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.160000	0.751244	
mm_10557.1	chr2	16758856	16759056	+	1	NA	NA	NA	254770	NR_040632	75069	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	0.010000	0.388060	59(TCATTTAAAAGC,-,0.00)
mm_87439.1	chr10	51480724	51480924	+	1	NA	NA	NA	212	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.010000	0.437811	
mm_13122.1	chr2	91664328	91664528	+	1	NA	NA	NA	11220	NM_146124	228359	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	0.000000	0.422886	
mm_70172.1	chr7	143628272	143628472	-	1	NA	NA	NA	-527	NM_175649	244237	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	0.005000	0.467662	
mm_20585.1	chr2	131158450	131158650	-	1	NA	NA	NA	1470	NM_026091	67326	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	0.010000	0.497512	-87(GGGCTTAAAGGC,-,0.00)
mm_31824.1	chr4	68587809	68588009	+	1	NA	NA	NA	366488	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.010000	0.343284	
mm_23246.1	chr3	51224368	51224568	+	1	NA	NA	NA	21	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.060000	0.631841	
mm_72021.1	chr8	70724081	70724281	+	1	NA	NA	NA	117	NM_201607	110385	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	0.020000	0.582090	
mm_160090.1	chr7	16721768	16721968	+	1	NA	NA	NA	-61	NM_011927	26368	Mm.27096	NM_011927	ENSMUSG00000007209	Ceacam9	AA410097|AW545709|Cea-5|Cea5|mmCGM8	carcinoembryonic antigen-related cell adhesion molecule 9	protein-coding	0.005000	0.542289	
mm_44721.1	chr5	30960123	30960323	-	1	NA	NA	NA	104	NM_001294302	50907	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0.115000	0.671642	
mm_63317.1	chr7	126928772	126928972	+	1	NA	NA	NA	-7	NM_172747	233877	Mm.245897	NM_172747	ENSMUSG00000030685	Kctd13	1500003N18Rik|AV259508|PDIP1alpha|Pdip1|Poldip1	potassium channel tetramerisation domain containing 13	protein-coding	0.165000	0.776119	
mm_71237.1	chr8	40908006	40908206	+	1	NA	NA	NA	-18127	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.025000	0.442786	
mm_168040.1	chrY	90742868	90743068	-	1	NA	NA	NA	12082	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.050000	0.631841	
mm_59991.1	chr7	30554831	30555031	+	1	NA	NA	NA	1629	NM_001012401	243912	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	0.025000	0.552239	
mm_35331.1	chr4	26346792	26346992	-	1	NA	NA	NA	-240	NM_172865	242362	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.090000	0.666667	
mm_70561.1	chr8	13086352	13086552	+	1	NA	NA	NA	18891	NM_178708	234069	Mm.103427	NM_178708	ENSMUSG00000038542	Pcid2	A730042J05Rik	PCI domain containing 2	protein-coding	0.010000	0.487562	
mm_51878.1	chr6	90565853	90566053	+	1	NA	NA	NA	15105	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.015000	0.552239	
mm_130935.1	chr15	103213144	103213344	-	1	NA	NA	NA	2108	NM_007626	12419	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0.015000	0.482587	
mm_109416.1	chr12	110485633	110485833	+	1	NA	NA	NA	-6	NM_001081457	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.020000	0.437811	
mm_70570.1	chr8	13159171	13159371	+	1	NA	NA	NA	110	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.160000	0.766169	
mm_14255.1	chr2	128158594	128158794	+	1	NA	NA	NA	31119	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.005000	0.323383	-51(TTTTTTAAACCC,+,0.00)
mm_127429.1	chr15	101269991	101270191	+	1	NA	NA	NA	3245	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.030000	0.606965	
mm_134003.1	chr16	4789905	4790105	-	1	NA	NA	NA	-70	NM_025670	66626	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0.115000	0.701493	
mm_36212.1	chr4	62470795	62470995	-	1	NA	NA	NA	0	NM_001290522	71354	Mm.155573	NM_023597	ENSMUSG00000028391	Wdr31	5430402I10Rik|spWD	WD repeat domain 31	protein-coding	0.100000	0.686567	
mm_103558.1	chr11	77722542	77722742	-	1	NA	NA	NA	2651	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.025000	0.452736	
mm_137924.1	chr17	32506360	32506560	+	1	NA	NA	NA	-2	NM_001101445	208285	Mm.311422	NM_001101445	ENSMUSG00000091586	Cyp4f17	EG208285	cytochrome P450, family 4, subfamily f, polypeptide 17	protein-coding	0.065000	0.646766	
mm_67006.1	chr7	65313879	65314079	-	1	NA	NA	NA	57265	NM_001163574	21872	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.025000	0.407960	
mm_17568.1	chr2	30237541	30237741	-	1	NA	NA	NA	-10	NR_028299	67350	Mm.402683	NR_028299		1700084E18Rik	-	RIKEN cDNA 1700084E18 gene	ncRNA	0.110000	0.676617	
mm_107217.1	chr12	26448568	26448768	+	1	NA	NA	NA	7784	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.005000	0.447761	
mm_110463.1	chr12	51773486	51773686	-	1	NA	NA	NA	55950	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.005000	0.383085	
mm_99489.1	chr11	102761325	102761525	+	1	NA	NA	NA	-10	NM_009613	11488	Mm.89854	NM_009613	ENSMUSG00000020926	Adam11	AW060611|Mdc	a disintegrin and metallopeptidase domain 11	protein-coding	0.155000	0.805970	
mm_126974.1	chr15	93432802	93433002	+	1	NA	NA	NA	34438	NM_001285863	223828	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.005000	0.452736	
mm_83638.1	chr9	49503684	49503884	-	1	NA	NA	NA	-14504	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.020000	0.417910	
mm_165698.1	chr3	94984743	94984943	+	1	NA	NA	NA	10112	NM_001293716	107650	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase, catalytic, beta polypeptide	protein-coding	0.025000	0.547264	-34(CCCTCTAAAAGG,-,0.00),-33(CCTCTAAAAGGA,+,0.00)
mm_106130.1	chr11	116459839	116460039	-	1	NA	NA	NA	-5592	NM_001033267	217341	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0.010000	0.472637	
mm_157587.1	chrX	53070560	53070760	-	1	NA	NA	NA	-13470	NR_038184	72575	Mm.59516	NR_038184		C430049B03Rik	2700063P19Rik|9430052C07Rik|mir-322|mir-351|mir-503	RIKEN cDNA C430049B03 gene	ncRNA	0.035000	0.492537	
mm_163875.1	chr14	19419341	19419541	+	1	NA	NA	NA	183146	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.358209	
mm_64135.1	chr7	141194031	141194231	+	1	NA	NA	NA	1	NM_001172064	70552	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	0.080000	0.626866	
mm_126417.1	chr15	80287422	80287622	+	1	NA	NA	NA	284	NM_001044308	239556	Mm.291058	NM_001044308	ENSMUSG00000022416	Cacna1i	Ca(V)3.3	calcium channel, voltage-dependent, alpha 1I subunit	protein-coding	0.225000	0.895522	
mm_102211.1	chr11	54860484	54860684	-	1	NA	NA	NA	7	NM_029327	75530	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	0.060000	0.671642	
mm_82844.1	chr9	31168797	31168997	-	1	NA	NA	NA	-37098	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.005000	0.462687	
mm_95792.1	chr11	54961647	54961847	+	1	NA	NA	NA	1193	NM_021327	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.015000	0.577114	
mm_21214.1	chr2	155692282	155692482	-	1	NA	NA	NA	2	NM_019828	56407	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	0.110000	0.656716	
mm_67226.1	chr7	74554557	74554757	-	1	NA	NA	NA	123	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.170000	0.791045	
mm_108354.1	chr12	80644139	80644339	+	1	NA	NA	NA	24	NM_026244	328133	Mm.238279	NM_026244	ENSMUSG00000048833	Slc39a9	2010002A02Rik|2610511I23Rik|4833420E20Rik|AW209151	solute carrier family 39 (zinc transporter), member 9	protein-coding	0.035000	0.572139	
mm_8240.1	chr1	138485224	138485424	-	1	NA	NA	NA	134433	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.010000	0.353234	
mm_91844.1	chr10	57794708	57794908	-	1	NA	NA	NA	264	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.090000	0.711443	
mm_97502.1	chr11	78404616	78404816	+	1	NA	NA	NA	10231	NR_003282	790911	Mm.457257	NR_003282	ENSMUSG00000085747	Slc13a2os	Gm11194|OTTMUSG00000000132	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand	ncRNA	0.045000	0.577114	
mm_16142.1	chr2	171193126	171193326	+	1	NA	NA	NA	461419	NM_001163686	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0.020000	0.462687	
mm_21620.1	chr2	164276003	164276203	-	1	NA	NA	NA	2204	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.035000	0.532338	
mm_135021.1	chr16	32487808	32488008	-	1	NA	NA	NA	-29	NM_145932	106407	Mm.476915	NM_145932	ENSMUSG00000035699	Slc51a	AV001382|AW261577|D630035O19Rik|OSTalpha|Osta	solute carrier family 51, alpha subunit	protein-coding	0.010000	0.467662	
mm_98287.1	chr11	89065913	89066113	+	1	NA	NA	NA	5262	NR_110336	414094	Mm.124287	NM_001001497		Dgkeos	A930013B10Rik	diacylglycerol kinase, epsilon, opposite strand	ncRNA	0.010000	0.467662	
mm_59301.1	chr7	25206025	25206225	+	1	NA	NA	NA	11600	NR_106015	102466794		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	0.030000	0.597015	
mm_142878.1	chr17	51826192	51826392	-	1	NA	NA	NA	296	NM_001163631	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.000000	0.442786	
mm_24889.1	chr3	96108478	96108678	+	1	NA	NA	NA	4051	NM_001025614	229603	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0.015000	0.492537	
mm_42147.1	chr5	111418612	111418812	+	1	NA	NA	NA	546	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.085000	0.676617	
mm_125357.1	chr15	39391826	39392026	+	1	NA	NA	NA	193640	NM_053271	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.020000	0.442786	
mm_125376.1	chr15	40654786	40654986	+	1	NA	NA	NA	-156	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding	0.060000	0.621891	
mm_133631.1	chr16	91651589	91651789	+	1	NA	NA	NA	3865	NM_178880	20658	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	0.010000	0.467662	
mm_50906.1	chr6	57581687	57581887	+	1	NA	NA	NA	795	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.045000	0.517413	
mm_170758.1	chr2	158399926	158400126	-	1	NA	NA	NA	-9827	NM_001291137	228850	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0.015000	0.442786	
mm_13043.1	chr2	91096614	91096814	+	1	NA	NA	NA	36	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.025000	0.597015	
mm_165629.1	chr3	67012113	67012313	+	1	NA	NA	NA	26541	NM_025822	66880	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	0.015000	0.472637	
mm_161305.1	chr14	32599329	32599529	+	1	NA	NA	NA	21	NM_001347590	107751	Mm.119274	NM_001001796	ENSMUSG00000041730	Prrxl1	Drg11|Drgx	paired related homeobox protein-like 1	protein-coding	0.100000	0.631841	
mm_168035.1	chrY	90742290	90742490	-	1	NA	NA	NA	12660	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.075000	0.641791	
mm_12770.1	chr2	79321369	79321569	+	1	NA	NA	NA	66043	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.015000	0.398010	
mm_146310.1	chr18	80278895	80279095	+	1	NA	NA	NA	22689	NM_001164423	66943	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.005000	0.457711	
mm_73085.1	chr8	94513214	94513414	+	1	NA	NA	NA	8268	NR_106040	102466800		NR_106040	ENSMUSG00000098511	Mir7072	Gm27665|mmu-mir-7072	microRNA 7072	ncRNA	0.000000	0.442786	
mm_98714.1	chr11	96314716	96314916	+	1	NA	NA	NA	-2349	NR_029784	723893		NR_029784	ENSMUSG00000065519	Mir10a	Mirn10a|miR-10a|mmu-mir-10a	microRNA 10a	ncRNA	0.080000	0.577114	
mm_151062.1	chr19	47228970	47229170	+	1	NA	NA	NA	227	NM_001163480	18011	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.040000	0.656716	
mm_115925.1	chr13	23570945	23571145	-	1	NA	NA	NA	175	NM_178187	319166	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	0.105000	0.646766	
mm_71146.1	chr8	39297894	39298094	+	1	NA	NA	NA	14	NR_044988	621335	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	0.015000	0.472637	
mm_98679.1	chr11	96285480	96285680	+	1	NA	NA	NA	-1066	NM_010460	15415	Mm.390366	NM_010460	ENSMUSG00000038721	Hoxb7	AI325018|Hox-2.3	homeobox B7	protein-coding	0.040000	0.636816	
mm_105700.1	chr11	108248949	108249149	-	1	NA	NA	NA	94839	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.005000	0.482587	
mm_27437.1	chr3	51662688	51662888	-	1	NA	NA	NA	1609	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.010000	0.507463	
mm_130650.1	chr15	100636660	100636860	-	1	NA	NA	NA	180	NR_104338	207818	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.185000	0.791045	
mm_164617.1	chr17	31161452	31161652	+	1	NA	NA	NA	3501	NM_009362	21784	Mm.2854	NM_009362	ENSMUSG00000024032	Tff1	Bcei|PS2	trefoil factor 1	protein-coding	0.000000	0.522388	
mm_136751.1	chr17	8525339	8525539	+	1	NA	NA	NA	-1362	NM_001290707	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.040000	0.547264	
mm_3523.1	chr1	150107985	150108185	+	1	NA	NA	NA	8054	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.000000	0.258706	
mm_103024.1	chr11	69734986	69735186	-	1	NA	NA	NA	23547	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.010000	0.527363	
mm_150119.1	chr19	29945691	29945891	+	1	NA	NA	NA	1	NM_001164724	77125	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	0.020000	0.442786	
mm_114131.1	chr13	55211805	55212005	+	1	NA	NA	NA	2123	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.115000	0.751244	
mm_167066.1	chr7	97417365	97417565	-	1	NA	NA	NA	85	NM_009381	21835	Mm.28585	NM_009381	ENSMUSG00000035686	Thrsp	S14|SPOT14	thyroid hormone responsive	protein-coding	0.040000	0.577114	
mm_68717.1	chr7	120095188	120095388	-	1	NA	NA	NA	-7138	NM_145586	233806	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	0.015000	0.477612	
mm_62805.1	chr7	112899847	112900047	+	1	NA	NA	NA	-54015	NM_175279	78748	Mm.349943	NM_175279	ENSMUSG00000098132	Rassf10	4632411J06Rik	Ras association (RalGDS/AF-6) domain family (N-terminal) member 10	protein-coding	0.000000	0.437811	
mm_43068.1	chr5	124445283	124445483	+	1	NA	NA	NA	-116	NM_001310723	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.180000	0.800995	
mm_1601.1	chr1	74377054	74377254	+	1	NA	NA	NA	1951	NM_013612	18173	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.025000	0.601990	
mm_119061.1	chr14	30719730	30719930	+	1	NA	NA	NA	4215	NM_001166532	54650	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.005000	0.353234	
mm_164695.1	chr17	48501899	48502099	+	1	NA	NA	NA	47098	NM_152823	76589	Mm.311629	NM_152823	ENSMUSG00000043592	Unc5cl	2510009H09Rik|BB155270|Zud	unc-5 family C-terminal like	protein-coding	0.015000	0.507463	
mm_115094.1	chr13	102706847	102707047	+	1	NA	NA	NA	13389	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.005000	0.393035	
mm_151954.1	chr19	5801244	5801444	-	1	NA	NA	NA	1328	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.015000	0.512438	-67(GCTTTTAAAATC,+,0.00),-66(CTTTTAAAATCC,+,0.00)
mm_47622.1	chr5	125245744	125245944	-	1	NA	NA	NA	-66630	NM_001253904	20602	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.055000	0.597015	
mm_155606.1	chrX	82960477	82960677	+	1	NA	NA	NA	11707	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.005000	0.328358	
mm_109767.1	chr12	118376664	118376864	+	1	NA	NA	NA	-75324	NM_001166385	20688	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0.000000	0.512438	
mm_80527.1	chr9	80164897	80165097	+	1	NA	NA	NA	-37	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.085000	0.706468	
mm_50888.1	chr6	56714821	56715021	+	1	NA	NA	NA	16	NM_030235	78937	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	0.105000	0.736318	
mm_11974.1	chr2	54905426	54905626	+	1	NA	NA	NA	469139	NM_173030	271786	Mm.330227	NM_173030	ENSMUSG00000060988	Galnt13	A230002A12|A230020F20|BB182356	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	protein-coding	0.010000	0.383085	
mm_28250.1	chr3	88511017	88511217	-	1	NA	NA	NA	-7765	NM_001002011	16905	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.015000	0.457711	-90(CCGTTTTTAAAG,-,0.00),-88(GTTTTTAAAGAT,+,0.00)
mm_88691.1	chr10	80117203	80117403	+	1	NA	NA	NA	1500	NM_001301854	20869	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.080000	0.621891	
mm_116118.1	chr13	28950363	28950563	-	1	NA	NA	NA	3219	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.025000	0.343284	52(CTCTTTAAAAGG,-,0.00),53(TCTTTAAAAGGA,+,0.00)
mm_72888.1	chr8	89995816	89996016	+	1	NA	NA	NA	352336	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding	0.005000	0.447761	13(GTCTCTTTATGG,-,0.00),15(CTCTTTATGGGA,+,0.00),79(GCCTTTAAGCTC,+,0.00)
mm_90697.1	chr10	130322820	130323020	+	1	NA	NA	NA	68	NM_183264	67596	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	0.015000	0.422886	
mm_116803.1	chr13	54072495	54072695	-	1	NA	NA	NA	750	NM_027324	14057	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	0.025000	0.432836	
mm_70823.1	chr8	23138970	23139170	+	1	NA	NA	NA	40	NM_001310437	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.040000	0.492537	-92(AATTATAAAAGG,-,0.00)
mm_80000.1	chr9	67047732	67047932	+	1	NA	NA	NA	1381	NM_001164255	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.020000	0.542289	
mm_13880.1	chr2	119972313	119972513	+	1	NA	NA	NA	-286	NM_011941	26390	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	0.095000	0.676617	-69(CCTTTACTAGGC,+,0.00)
mm_142859.1	chr17	51813441	51813641	-	1	NA	NA	NA	-1487	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.155000	0.781095	
mm_56444.1	chr6	97487685	97487885	-	1	NA	NA	NA	35	NM_001346637	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.070000	0.641791	
mm_76668.1	chr8	93427054	93427254	-	1	NA	NA	NA	-89945	NM_021456	12623	Mm.22720	NM_021456	ENSMUSG00000057074	Ces1g	Ces-1|Ces1|Ses-1	carboxylesterase 1G	protein-coding	0.045000	0.592040	
mm_66492.1	chr7	45053867	45054067	-	1	NA	NA	NA	-1086	NM_175022	233210	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	0.075000	0.626866	
mm_73140.1	chr8	94977260	94977460	+	1	NA	NA	NA	251	NM_001198894	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.030000	0.592040	
mm_151622.1	chr19	3906956	3907156	-	1	NA	NA	NA	-73	NM_001167784	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.050000	0.641791	
mm_133689.1	chr16	92498695	92498895	+	1	NA	NA	NA	648	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	0.105000	0.746269	
mm_57177.1	chr6	122848174	122848374	-	1	NA	NA	NA	7883	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.015000	0.447761	
mm_15337.1	chr2	155978954	155979154	+	1	NA	NA	NA	22496	NM_177217	16328	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	0.010000	0.417910	
mm_44817.1	chr5	33652220	33652420	-	1	NA	NA	NA	254	NM_001289725	20492	Mm.4172	NM_009193	ENSMUSG00000004642	Slbp	-	stem-loop binding protein	protein-coding	0.110000	0.666667	
mm_111340.1	chr12	86884609	86884809	-	1	NA	NA	NA	105	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.115000	0.701493	
mm_128199.1	chr15	35294996	35295196	-	1	NA	NA	NA	-1016	NM_054049	107587	Mm.46336	NM_054049	ENSMUSG00000022330	Osr2	5430409I15Rik|Osr2A|Osr2B	odd-skipped related 2	protein-coding	0.040000	0.462687	
mm_37413.1	chr4	122859740	122859940	-	1	NA	NA	NA	23613	NM_008917	19063	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.015000	0.557214	
mm_147286.1	chr18	39489170	39489370	-	1	NA	NA	NA	-2025	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.105000	0.706468	
mm_114897.1	chr13	94403942	94404142	+	1	NA	NA	NA	45082	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.025000	0.472637	-12(GGCTATTAAGGA,-,0.00)
mm_27579.1	chr3	58885237	58885437	-	1	NA	NA	NA	-125	NM_153385	229320	Mm.131502	NM_153384	ENSMUSG00000043850	Clrn1	A130002D11Rik|USH3|Ush3a|clarin-1	clarin 1	protein-coding	0.010000	0.442786	
mm_122322.1	chr14	36935517	36935717	-	1	NA	NA	NA	-49	NM_028407	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.015000	0.452736	
mm_114402.1	chr13	64153615	64153815	+	1	NA	NA	NA	-516	NM_175494	238673	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	0.060000	0.616915	-36(CAGTTTAAAGGG,-,0.00)
mm_75335.1	chr8	43305775	43305975	-	1	NA	NA	NA	1134	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.050000	0.557214	
mm_27692.1	chr3	66193430	66193630	-	1	NA	NA	NA	-26357	NM_008987	19288	Mm.276776	NM_008987	ENSMUSG00000027832	Ptx3	AI607804|TSG-14	pentraxin related gene	protein-coding	0.005000	0.278607	
mm_68964.1	chr7	126583463	126583663	-	1	NA	NA	NA	-327	NM_009907	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.050000	0.512438	
mm_29721.1	chr3	125935832	125936032	-	1	NA	NA	NA	2618	NM_011674	22239	Mm.306021	NM_011674	ENSMUSG00000032854	Ugt8a	AI850488|AW455908|Cgt|Ugt8|mCerGT	UDP galactosyltransferase 8A	protein-coding	0.000000	0.373134	
mm_61873.1	chr7	89426242	89426442	+	1	NA	NA	NA	36	NR_102276	101521	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	0.025000	0.477612	
mm_87360.1	chr10	43825803	43826003	+	1	NA	NA	NA	-4	NR_131055	71018	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0.020000	0.462687	
mm_24835.1	chr3	95659014	95659214	+	1	NA	NA	NA	393	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.185000	0.781095	
mm_4551.1	chr1	177442319	177442519	+	1	NA	NA	NA	-2242	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.155000	0.845771	
mm_123487.1	chr14	66077617	66077817	-	1	NA	NA	NA	52	NM_009618	11495	Mm.422850	NM_009618	ENSMUSG00000022039	Adam2	AI323749|Ftnb|Ph30-beta	a disintegrin and metallopeptidase domain 2	protein-coding	0.035000	0.636816	
mm_154604.1	chrX	7641001	7641201	+	1	NA	NA	NA	2521	NM_009305	20977	Mm.223674	NM_009305	ENSMUSG00000031144	Syp	A230093K24Rik|AI848995|Syn|p38	synaptophysin	protein-coding	0.040000	0.592040	
mm_21705.1	chr2	164573331	164573531	-	1	NA	NA	NA	25	NM_001177401	629747	Mm.234248	NM_001177401	ENSMUSG00000074596	Spint3	Gm14315|OTTMUSG00000016288	serine peptidase inhibitor, Kunitz type, 3	protein-coding	0.010000	0.497512	
mm_13979.1	chr2	121457003	121457203	+	1	NA	NA	NA	15	NM_026318	67693	Mm.330525	NM_026318	ENSMUSG00000027245	Hypk	2310003F16Rik|HSPC136	huntingtin interacting protein K	protein-coding	0.090000	0.636816	-50(CCTTATCTGGGC,+,0.00)
mm_72410.1	chr8	81775763	81775963	+	1	NA	NA	NA	433301	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.000000	0.378109	
mm_168161.1	chr10	4353364	4353564	+	1	NA	NA	NA	34644	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.050000	0.517413	
mm_122006.1	chr14	26970402	26970602	-	1	NA	NA	NA	49	NM_145221	72993	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	0.125000	0.746269	
mm_56394.1	chr6	95718716	95718916	-	1	NA	NA	NA	30	NM_011507	20917	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding	0.090000	0.731343	
mm_70007.1	chr7	142397979	142398179	-	1	NA	NA	NA	-10209	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.005000	0.572139	
mm_123628.1	chr14	68124746	68124946	-	1	NA	NA	NA	158	NM_008691	18040	Mm.242832	NM_008691	ENSMUSG00000022054	Nefm	NF-M|NF160|NF165|Nef3|Nfm	neurofilament, medium polypeptide	protein-coding	0.105000	0.726368	-34(CGCTATAAAGGG,-,0.00)
mm_59908.1	chr7	30412833	30413033	+	1	NA	NA	NA	-855	NM_011662	22177	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0.010000	0.597015	
mm_119915.1	chr14	54953246	54953446	+	1	NA	NA	NA	-4204	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.040000	0.552239	
mm_62546.1	chr7	102426478	102426678	+	1	NA	NA	NA	-15117	NM_009103	20133	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.005000	0.472637	
mm_152491.1	chr19	11055679	11055879	-	1	NA	NA	NA	-5213	NR_102366	107350	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.000000	0.378109	
mm_113262.1	chr13	28874194	28874394	+	1	NA	NA	NA	11128	NR_045054	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.020000	0.417910	
mm_38983.1	chr4	150944856	150945056	-	1	NA	NA	NA	16957	NM_001077509	21942	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.025000	0.472637	
mm_113160.1	chr13	24802927	24803127	+	1	NA	NA	NA	1370	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.020000	0.412935	
mm_39272.1	chr5	3803077	3803277	+	1	NA	NA	NA	-4	NR_033173	79264	Mm.32368	NM_030675	ENSMUSG00000000600	Krit1	2010007K12Rik|A630036P20Rik|AA432855|AI450393|AI643869|BB155247|BB235701|Ccm1	KRIT1, ankyrin repeat containing	protein-coding	0.105000	0.681592	
mm_88620.1	chr10	79859304	79859504	+	1	NA	NA	NA	-3183	NR_105875	102465549		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	0.025000	0.606965	82(CCTTTTCTACCC,+,0.00)
mm_45.1	chr1	6500284	6500484	+	1	NA	NA	NA	13153	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.010000	0.268657	
mm_3350.1	chr1	138152322	138152522	+	1	NA	NA	NA	22704	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.005000	0.492537	
mm_140107.1	chr17	78573788	78573988	+	1	NA	NA	NA	65825	NM_028813	74199	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik	vitrin	protein-coding	0.025000	0.582090	
mm_82532.1	chr9	20726904	20727104	-	1	NA	NA	NA	1210	NM_173777	244723	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.120000	0.746269	-5(CGCCTTATAAAG,-,0.00),-3(CCTTATAAAGCT,+,0.00)
mm_169958.1	chr16	91248561	91248761	+	1	NA	NA	NA	-21108	NM_016968	50914	Mm.39300	NM_016968	ENSMUSG00000046160	Olig1	AI836478|AW494459|Bhlhb6|Olg-1|Oligo1|bHLHe21	oligodendrocyte transcription factor 1	protein-coding	0.080000	0.552239	
mm_161577.1	chr16	25865601	25865801	+	1	NA	NA	NA	63785	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.010000	0.447761	
mm_170111.1	chr17	39844972	39845172	+	1	NA	NA	NA	2075	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.120000	0.721393	
mm_123785.1	chr14	70348333	70348533	-	1	NA	NA	NA	0	NM_001135152	213053	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0.010000	0.587065	
mm_56151.1	chr6	87843559	87843759	-	1	NA	NA	NA	-4900	NM_133934	57905	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	0.010000	0.417910	
mm_60284.1	chr7	43978975	43979175	+	1	NA	NA	NA	3014	NM_010116	13648	Mm.440884	NM_010116	ENSMUSG00000059042	Klk1b9	EGF-BP C|Egfbp-3|Egfbp3|KAL|Klk9|kallikrein|mGk-9	kallikrein 1-related peptidase b9	protein-coding	0.010000	0.577114	
mm_115445.1	chr13	117971490	117971690	+	1	NA	NA	NA	-251579	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA	0.025000	0.447761	
mm_69219.1	chr7	127588068	127588268	-	1	NA	NA	NA	427	NM_001033040	233899	Mm.25220	NM_001033040	ENSMUSG00000057176	Ccdc189	Gm166	coiled-coil domain containing 189	protein-coding	0.040000	0.592040	
mm_24009.1	chr3	87376350	87376550	+	1	NA	NA	NA	63	NM_001136236	229499	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	0.010000	0.487562	
mm_163357.1	chr12	28800603	28800803	+	1	NA	NA	NA	48875	NM_201357	380752	Mm.273724	NM_201357	ENSMUSG00000036613	Tssc1	D12Ertd604e|Eipr1	tumor suppressing subtransferable candidate 1	protein-coding	0.015000	0.517413	
mm_125417.1	chr15	41820031	41820231	+	1	NA	NA	NA	-10827	NM_001130164	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.030000	0.527363	
mm_9609.1	chr1	176213611	176213811	-	1	NA	NA	NA	231	NM_001195816	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	0.035000	0.567164	
mm_137328.1	chr17	25016485	25016685	+	1	NA	NA	NA	499	NM_134126	106633	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	0.080000	0.606965	
mm_96741.1	chr11	69838446	69838646	+	1	NA	NA	NA	21	NM_026982	69186	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	0.050000	0.606965	
mm_61841.1	chr7	88290502	88290702	+	1	NA	NA	NA	12517	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.020000	0.398010	
mm_122835.1	chr14	54723475	54723675	-	1	NA	NA	NA	-11401	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.005000	0.522388	
mm_51014.1	chr6	65022109	65022309	+	1	NA	NA	NA	-20458	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.005000	0.467662	
mm_171751.1	chr5	102409701	102409901	+	1	NA	NA	NA	-71590	NM_146161	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.065000	0.661692	
mm_120296.1	chr14	63138318	63138518	+	1	NA	NA	NA	15956	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.562189	
mm_171379.1	chr4	119293660	119293860	-	1	NA	NA	NA	753	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.060000	0.572139	
mm_81096.1	chr9	106374224	106374424	+	1	NA	NA	NA	5692	NM_153459	235584	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.015000	0.393035	-58(ATTTTTAAAGAC,+,0.00)
mm_56936.1	chr6	119848003	119848203	-	1	NA	NA	NA	47	NM_053204	111173	Mm.288860	NM_053204	ENSMUSG00000030172	Erc1	4930404L01Rik|5033405M01Rik|9630025C19Rik|B430107L16Rik|CAST2|ELKS|Elks1|RAB6IP2A|RAB6IP2B|Rab6ip2|mKIAA1081	ELKS/RAB6-interacting/CAST family member 1	protein-coding	0.150000	0.766169	
mm_99144.1	chr11	100441810	100442010	+	1	NA	NA	NA	-14	NM_025727	66720	Mm.34168	NM_025727	ENSMUSG00000001558	Klhl10	4921517C11Rik	kelch-like 10	protein-coding	0.005000	0.572139	
mm_25153.1	chr3	102996042	102996242	+	1	NA	NA	NA	402	NM_025679	66641	Mm.33937	NM_025679	ENSMUSG00000027854	Sike1	2810005O12Rik|5730470L24Rik|AI450236|AI839862|Sike|Sikeb	suppressor of IKBKE 1	protein-coding	0.025000	0.517413	
mm_113571.1	chr13	38350111	38350311	+	1	NA	NA	NA	4495	NM_007556	12161	Mm.385759	NM_007556	ENSMUSG00000039004	Bmp6	D13Wsu115e|Vgr1	bone morphogenetic protein 6	protein-coding	0.005000	0.417910	
mm_133685.1	chr16	92498049	92498249	+	1	NA	NA	NA	2	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	0.015000	0.582090	
mm_81135.1	chr9	106561615	106561815	+	1	NA	NA	NA	-90	NM_026645	68265	Mm.141451	NM_026645	ENSMUSG00000023577	Iqcf3	1700012F17Rik|AV040440	IQ motif containing F3	protein-coding	0.025000	0.542289	
mm_96160.1	chr11	61487650	61487850	+	1	NA	NA	NA	2306	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.015000	0.537313	
mm_77291.1	chr8	116944089	116944289	-	1	NA	NA	NA	796	NM_177700	234776	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	0.030000	0.547264	
mm_8053.1	chr1	135374327	135374527	-	1	NA	NA	NA	636	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.040000	0.616915	
mm_94698.1	chr11	20137995	20138195	+	1	NA	NA	NA	-25144	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.000000	0.507463	
mm_98911.1	chr11	98202680	98202880	+	1	NA	NA	NA	-525	NM_001109628	69131	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.080000	0.616915	
mm_37315.1	chr4	119335444	119335644	-	1	NA	NA	NA	-15021	NM_001110130	66101	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	0.030000	0.497512	
mm_121401.1	chr14	119169861	119170061	+	1	NA	NA	NA	31696	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.015000	0.343284	
mm_130623.1	chr15	100403318	100403518	-	1	NA	NA	NA	19637	NM_001146161	18174	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0.035000	0.512438	
mm_41404.1	chr5	90786410	90786610	+	1	NA	NA	NA	409	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.025000	0.567164	
mm_35223.1	chr4	19678748	19678948	-	1	NA	NA	NA	30156	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.000000	0.238806	
mm_114639.1	chr13	76472077	76472277	+	1	NA	NA	NA	87216	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.005000	0.373134	
mm_59454.1	chr7	27195041	27195241	+	1	NA	NA	NA	619	NM_001046637	53607	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0.015000	0.497512	
mm_103486.1	chr11	76509182	76509382	-	1	NA	NA	NA	137	NM_198018	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.025000	0.636816	
mm_118533.1	chr14	15910331	15910531	+	1	NA	NA	NA	-338883	NM_021504	59007	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	0.010000	0.482587	
mm_149584.1	chr19	16025324	16025524	+	1	NA	NA	NA	40349	NR_045355	100502653	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0.030000	0.422886	
mm_156294.1	chrX	136837452	136837652	+	1	NA	NA	NA	14806	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.393035	
mm_162733.1	chr10	51597282	51597482	-	1	NA	NA	NA	-6922	NM_029894	77296	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0.015000	0.442786	
mm_103616.1	chr11	78550707	78550907	-	1	NA	NA	NA	-72	NM_133706	69071	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0.080000	0.626866	
mm_19882.1	chr2	114049546	114049746	-	1	NA	NA	NA	3229	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.025000	0.472637	
mm_53457.1	chr6	134830143	134830343	+	1	NA	NA	NA	44	NM_177687	232430	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	0.070000	0.671642	
mm_157809.1	chrX	73945452	73945652	-	1	NA	NA	NA	-14702	NM_001164704	19703	Mm.236969	NM_023132	ENSMUSG00000031387	Renbp	Age|Rnbp	renin binding protein	protein-coding	0.010000	0.467662	
mm_145703.1	chr18	62657212	62657412	+	1	NA	NA	NA	-61048	NM_001001803	408198	Mm.478742	NM_001001803	ENSMUSG00000060201	Spink7	EG408198|Ecg2	serine peptidase inhibitor, Kazal type 7 (putative)	protein-coding	0.005000	0.437811	
mm_122185.1	chr14	31633593	31633793	-	1	NA	NA	NA	7272	NM_019975	56794	Mm.38887	NM_019975	ENSMUSG00000021884	Hacl1	1600020H07Rik|Hpcl|Phyh2	2-hydroxyacyl-CoA lyase 1	protein-coding	0.010000	0.338308	
mm_53909.1	chr6	3968306	3968506	-	1	NA	NA	NA	-31	NM_009364	21789	Mm.25612	NM_009364	ENSMUSG00000029664	Tfpi2	AV000670|PP5/TFPI-2	tissue factor pathway inhibitor 2	protein-coding	0.055000	0.611940	
mm_27719.1	chr3	68892980	68893180	-	1	NA	NA	NA	23494	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.010000	0.328358	-54(CTCTTTAAAAGG,-,0.00),-53(TCTTTAAAAGGA,+,0.00)
mm_16170.1	chr2	172546119	172546319	+	1	NA	NA	NA	-3374	NM_009335	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding	0.040000	0.597015	
mm_122450.1	chr14	45306114	45306314	-	1	NA	NA	NA	12358	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.020000	0.437811	
mm_118527.1	chr14	14963441	14963641	+	1	NA	NA	NA	142726	NM_001195229	674895	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.005000	0.348259	
mm_169634.1	chr15	47539895	47540095	+	1	NA	NA	NA	916690	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0.055000	0.522388	
mm_76137.1	chr8	81014804	81015004	-	1	NA	NA	NA	2	NM_027554	74841	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	0.080000	0.601990	
mm_2197.1	chr1	89454841	89455041	+	1	NA	NA	NA	130	NM_001037136	347722	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.160000	0.796020	
mm_127895.1	chr15	9155315	9155515	-	1	NA	NA	NA	10	NM_001285980	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.005000	0.482587	-42(CTGTTTAAAAGG,-,0.00)
mm_36853.1	chr4	106804992	106805192	-	1	NA	NA	NA	-85	NM_001347159	329910	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0.065000	0.661692	
mm_162470.1	chr1	132007812	132008012	-	1	NA	NA	NA	307	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.140000	0.736318	
mm_20095.1	chr2	120970575	120970775	-	1	NA	NA	NA	40	NM_009461	22222	Mm.389330	NM_009461	ENSMUSG00000027272	Ubr1	AI504731	ubiquitin protein ligase E3 component n-recognin 1	protein-coding	0.130000	0.676617	
mm_80954.1	chr9	103007866	103008066	+	1	NA	NA	NA	-523	NM_033314	24059	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	0.045000	0.601990	
mm_29682.1	chr3	123024754	123024954	-	1	NA	NA	NA	10133	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.010000	0.303483	
mm_6638.1	chr1	79371631	79371831	-	1	NA	NA	NA	68359	NM_009129	20254	Mm.5038	NM_009129	ENSMUSG00000050711	Scg2	Chgc|SgII	secretogranin II	protein-coding	0.010000	0.407960	
mm_63798.1	chr7	132931109	132931309	+	1	NA	NA	NA	-18413	NM_207302	360216	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0.105000	0.691542	
mm_51417.1	chr6	78381951	78382151	+	1	NA	NA	NA	1342	NM_011259	19694	Mm.2552	NM_011259	ENSMUSG00000079516	Reg3a	AV063448	regenerating islet-derived 3 alpha	protein-coding	0.010000	0.472637	
mm_57771.1	chr6	129236993	129237193	-	1	NA	NA	NA	952	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.000000	0.472637	
mm_21658.1	chr2	164404718	164404918	-	1	NA	NA	NA	0	NM_013592	17183	Mm.29428	NM_013592	ENSMUSG00000016995	Matn4	matrilin-4	matrilin 4	protein-coding	0.085000	0.671642	
mm_80587.1	chr9	85327817	85328017	+	1	NA	NA	NA	-767	NM_001160379	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.090000	0.686567	
mm_83331.1	chr9	44233916	44234116	-	1	NA	NA	NA	30	NM_007619	12402	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.185000	0.810945	
mm_72166.1	chr8	72240231	72240431	+	1	NA	NA	NA	313	NM_007456	11767	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	0.060000	0.651741	
mm_7900.1	chr1	133648781	133648981	-	1	NA	NA	NA	12004	NM_001166552	667118	Mm.245357	NM_001166552	ENSMUSG00000094410	Zbed6	Gm8466|MGR	zinc finger, BED type containing 6	protein-coding	0.000000	0.427861	58(CCCTTTATAGGT,+,0.00)
mm_3822.1	chr1	159275904	159276104	+	1	NA	NA	NA	-17769	NR_144489	100846986		NR_144489		Pou5f1-rs1	Gm21053|Oct4P2|Otf-3rs|Otf3-rs1|Otf3a	POU domain, class 5, transcription factor 1, related sequence 1	pseudo	0.000000	0.268657	
mm_57919.1	chr6	133853562	133853762	-	1	NA	NA	NA	5	NM_010594	16483	Mm.13052	NM_010594	ENSMUSG00000032758	Kap	AW146435|FKSG22	kidney androgen regulated protein	protein-coding	0.000000	0.472637	-39(ATGTATAAAAGC,-,0.00)
mm_116060.1	chr13	27513089	27513289	-	1	NA	NA	NA	24	NM_023741	74188	Mm.46090	NM_023741	ENSMUSG00000021346	Prl8a8	1600032B14Rik|Ghd14|PLP-Cgamma|Prlpc3	prolactin family 8, subfamily a, member 81	protein-coding	0.005000	0.427861	
mm_170390.1	chr18	6268488	6268688	-	1	NA	NA	NA	-27064	NM_008448	16573	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.005000	0.477612	
mm_153101.1	chr19	32712737	32712937	-	1	NA	NA	NA	-539	NM_026487	67979	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.025000	0.537313	
mm_149087.1	chr19	8920436	8920636	+	1	NA	NA	NA	143	NM_024256	72727	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	0.110000	0.736318	
mm_88634.1	chr10	79888567	79888767	+	1	NA	NA	NA	-2186	NM_001329541	11537	Mm.4407	NM_013459	ENSMUSG00000061780	Cfd	Adn|DF	complement factor D (adipsin)	protein-coding	0.050000	0.562189	
mm_59229.1	chr7	24655683	24655883	+	1	NA	NA	NA	-5511	NR_030681	100043706	Mm.483825	NR_030681	ENSMUSG00000108470	Gm4598	-	predicted gene 4598	ncRNA	0.000000	0.577114	-31(TCTTTTATGCTC,+,0.00)
mm_58901.1	chr7	17163171	17163371	+	1	NA	NA	NA	12871	NM_054059	384557	Mm.486145	NM_054059	ENSMUSG00000053228	Ceacam3	EG384557|Psg24|cea12	carcinoembryonic antigen-related cell adhesion molecule 3	protein-coding	0.000000	0.472637	
mm_34996.1	chr4	156109888	156110088	+	1	NA	NA	NA	-10	NM_145557	230996	Mm.318925	NM_145557	ENSMUSG00000059939	9430015G10Rik	-	RIKEN cDNA 9430015G10 gene	protein-coding	0.115000	0.696517	
mm_62005.1	chr7	91262033	91262233	+	1	NA	NA	NA	171347	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.030000	0.587065	
mm_55051.1	chr6	49044022	49044222	-	1	NA	NA	NA	7604	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.020000	0.532338	
mm_120484.1	chr14	65975751	65975951	+	1	NA	NA	NA	7368	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.030000	0.567164	
mm_172913.1	chr9	64173304	64173504	+	1	NA	NA	NA	17	NM_024212	67891	Mm.280083	NM_024212	ENSMUSG00000032399	Rpl4	2010004J23Rik	ribosomal protein L4	protein-coding	0.035000	0.552239	
mm_160509.1	chr9	20644396	20644596	-	1	NA	NA	NA	271	NM_001286529	30843	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding	0.040000	0.567164	
mm_96569.1	chr11	69027879	69028079	+	1	NA	NA	NA	12068	NM_001013256	68964	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	0.010000	0.577114	
mm_124661.1	chr15	6299688	6299888	+	1	NA	NA	NA	-1	NM_001008702	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.010000	0.398010	
mm_137921.1	chr17	32492057	32492257	+	1	NA	NA	NA	-14305	NM_001101445	208285	Mm.311422	NM_001101445	ENSMUSG00000091586	Cyp4f17	EG208285	cytochrome P450, family 4, subfamily f, polypeptide 17	protein-coding	0.030000	0.477612	
mm_26809.1	chr3	10197154	10197354	-	1	NA	NA	NA	29	NM_011598	21884	Mm.26654	NM_011598	ENSMUSG00000027528	Fabp9	1700007P10Rik|Perf|Perf15|Tlbp	fatty acid binding protein 9, testis	protein-coding	0.035000	0.512438	-1(TTCTTTAAAAGA,-,0.00),0(TCTTTAAAAGAA,+,0.00)
mm_16487.1	chr2	180967197	180967397	+	1	NA	NA	NA	-3	NM_001177706	228998	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	0.080000	0.681592	
mm_83196.1	chr9	41157365	41157565	-	1	NA	NA	NA	29	NM_176860	72828	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0.125000	0.756219	
mm_111269.1	chr12	85280298	85280498	-	1	NA	NA	NA	37	NM_025421	66204	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	0.080000	0.606965	
mm_37451.1	chr4	123411768	123411968	-	1	NA	NA	NA	43	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.125000	0.746269	
mm_104951.1	chr11	100135968	100136168	-	1	NA	NA	NA	-119	NM_008469	16665	Mm.440010	NM_008469	ENSMUSG00000054146	Krt15	AI528832|K15|Krt1-15	keratin 15	protein-coding	0.015000	0.492537	87(GGGTTTATAAGG,-,0.00),89(GTTTATAAGGAG,+,0.00)
mm_46910.1	chr5	114374893	114375093	-	1	NA	NA	NA	5512	NM_001159941	330171	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	0.055000	0.611940	
mm_147603.1	chr18	56853311	56853511	-	1	NA	NA	NA	72137	NM_177115	320253	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0.015000	0.398010	-3(CCCTATATAGCA,+,0.00)
mm_112393.1	chr12	119238507	119238707	-	1	NA	NA	NA	-331	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.040000	0.621891	
mm_163446.1	chr12	86990561	86990761	-	1	NA	NA	NA	-1985	NM_001080943	238331	Mm.185890	NM_001080943	ENSMUSG00000048483	Zdhhc22	Gm262	zinc finger, DHHC-type containing 22	protein-coding	0.040000	0.716418	
mm_134614.1	chr16	20822578	20822778	-	1	NA	NA	NA	-88167	NM_009379	21832	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.050000	0.527363	-23(GTCCTTTTAAGA,-,0.00),78(TCCTTTTTAAGG,-,0.00),80(CTTTTTAAGGAG,+,0.00)
mm_15861.1	chr2	164822966	164823166	+	1	NA	NA	NA	380	NM_028028	71971	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	0.090000	0.631841	
mm_80948.1	chr9	102834885	102835085	+	1	NA	NA	NA	65	NM_001042607	20187	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0.195000	0.855721	
mm_95809.1	chr11	55110216	55110416	+	1	NA	NA	NA	12331	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.000000	0.447761	
mm_94501.1	chr11	7197688	7197888	+	1	NA	NA	NA	1	NM_008341	16006	Mm.21300	NM_008341	ENSMUSG00000020429	Igfbp1	-	insulin-like growth factor binding protein 1	protein-coding	0.040000	0.572139	
mm_68840.1	chr7	126351504	126351704	-	1	NA	NA	NA	16441	NR_106025	102466797		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.015000	0.487562	
mm_60976.1	chr7	48884713	48884913	+	1	NA	NA	NA	-3772	NM_001013368	108961	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.020000	0.547264	
mm_20981.1	chr2	151974094	151974294	-	1	NA	NA	NA	-213	NM_028666	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.045000	0.562189	
mm_165595.1	chr3	40902401	40902601	-	1	NA	NA	NA	42	NR_045380	73297	Mm.422673	NM_028494	ENSMUSG00000074619	1700034I23Rik	-	FUN14 domain containing 2 pseudogene	pseudo	0.060000	0.557214	
mm_28485.1	chr3	92457236	92457436	-	1	NA	NA	NA	1384	NM_001204427	20766	Mm.57092	NM_011478	ENSMUSG00000045539	Sprr3	SPR3	small proline-rich protein 3	protein-coding	0.005000	0.502488	
mm_119931.1	chr14	54970075	54970275	+	1	NA	NA	NA	1388	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.005000	0.527363	
mm_134470.1	chr16	18533236	18533436	-	1	NA	NA	NA	34465	NR_104347	13972	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|OTTMUSG00000033458|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	0.020000	0.303483	
mm_35902.1	chr4	49597708	49597908	-	1	NA	NA	NA	62	NM_025944	67063	Mm.490285	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	0.070000	0.696517	
mm_14455.1	chr2	131186916	131187116	+	1	NA	NA	NA	68	NM_001111075	12531	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	0.040000	0.636816	-58(GAATATATAAGG,-,0.00)
mm_13832.1	chr2	119329658	119329858	+	1	NA	NA	NA	-3561	NR_030683	100043609	Mm.185068	NR_030683	ENSMUSG00000074912	Gm14207	Dll4|OTTMUSG00000015946	predicted gene 14207	ncRNA	0.005000	0.467662	
mm_32369.1	chr4	105267357	105267557	+	1	NA	NA	NA	110110	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.000000	0.417910	
mm_29575.1	chr3	116968887	116969087	-	1	NA	NA	NA	-35	NM_023245	114301	Mm.253736	NM_023245	ENSMUSG00000033377	Palmd	4631423C22Rik|PALML	palmdelphin	protein-coding	0.030000	0.522388	
mm_123421.1	chr14	64417049	64417249	-	1	NA	NA	NA	130	NM_001347639	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.020000	0.427861	-67(ATCTCTTAAAGC,-,0.00),-66(TCTCTTAAAGCC,+,0.00)
mm_68742.1	chr7	121064191	121064391	-	1	NA	NA	NA	10239	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.005000	0.427861	
mm_129544.1	chr15	79396771	79396971	-	1	NA	NA	NA	6048	NM_001253817	223693	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	0.020000	0.567164	
mm_18137.1	chr2	45033462	45033662	-	1	NA	NA	NA	-10385	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.452736	
mm_49251.1	chr6	17335261	17335461	+	1	NA	NA	NA	27721	NM_001243064	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.020000	0.497512	
mm_119001.1	chr14	29017980	29018180	+	1	NA	NA	NA	-128	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding	0.015000	0.512438	
mm_147104.1	chr18	35661987	35662187	-	1	NA	NA	NA	99	NM_029485	71242	Mm.151498	NM_027733	ENSMUSG00000024352	Spata24	2700012K08Rik|4930583E11Rik|5133400G04Rik|AU016220|TIPT|TIPT2	spermatogenesis associated 24	protein-coding	0.070000	0.616915	
mm_80182.1	chr9	72294214	72294414	+	1	NA	NA	NA	19426	NM_001311105	235469	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	0.000000	0.368159	
mm_64640.1	chr7	4007917	4008117	-	1	NA	NA	NA	55187	NM_001302677	52855	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.000000	0.348259	
mm_91501.1	chr10	37136013	37136213	-	1	NA	NA	NA	2813	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.105000	0.661692	
mm_26906.1	chr3	19311296	19311496	-	1	NA	NA	NA	-74	NM_001122759	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.165000	0.791045	
mm_40528.1	chr5	57919807	57920007	+	1	NA	NA	NA	201826	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.000000	0.407960	
mm_78745.1	chr9	42122608	42122808	+	1	NA	NA	NA	1581	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.010000	0.432836	
mm_42968.1	chr5	123138523	123138723	+	1	NA	NA	NA	-3570	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.040000	0.631841	
mm_115441.1	chr13	117666399	117666599	+	1	NA	NA	NA	53512	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA	0.015000	0.278607	
mm_67954.1	chr7	100499363	100499563	-	1	NA	NA	NA	6105	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.005000	0.557214	
mm_1301.1	chr1	64533036	64533236	+	1	NA	NA	NA	332	NM_001037726	12912	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.120000	0.751244	
mm_163148.1	chr11	83063409	83063609	+	1	NA	NA	NA	-1603	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.005000	0.522388	-1(CCTTATCTGGGC,+,0.00)
mm_22059.1	chr2	168601492	168601692	-	1	NA	NA	NA	65	NM_001291171	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.105000	0.741294	
mm_172791.1	chr9	109970316	109970516	+	1	NA	NA	NA	38642	NM_008633	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.005000	0.393035	
mm_16854.1	chr2	11636116	11636316	-	1	NA	NA	NA	-6576	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.005000	0.472637	
mm_44367.1	chr5	17811121	17811321	-	1	NA	NA	NA	24675	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.323383	
mm_149285.1	chr19	10634134	10634334	+	1	NA	NA	NA	1	NM_027913	71768	Mm.169261	NM_027913	ENSMUSG00000043789	Vwce	1300015B04Rik	von Willebrand factor C and EGF domains	protein-coding	0.060000	0.671642	
mm_96378.1	chr11	67242714	67242914	+	1	NA	NA	NA	5002	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.020000	0.447761	
mm_69633.1	chr7	137410877	137411077	-	1	NA	NA	NA	-221	NM_029886	77252	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.055000	0.552239	
mm_81108.1	chr9	106452086	106452286	+	1	NA	NA	NA	-1652	NM_021567	59092	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	0.000000	0.537313	
mm_59394.1	chr7	26764435	26764635	+	1	NA	NA	NA	7393	NM_007814	13090	Mm.14098	NM_007814	ENSMUSG00000066704	Cyp2b19	CYPIIB19	cytochrome P450, family 2, subfamily b, polypeptide 19	protein-coding	0.005000	0.467662	
mm_48003.1	chr5	136161242	136161442	-	1	NA	NA	NA	9314	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.020000	0.537313	
mm_52698.1	chr6	119215255	119215455	+	1	NA	NA	NA	-18946	NM_001255999	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.025000	0.636816	
mm_24962.1	chr3	96697033	96697233	+	1	NA	NA	NA	57	NM_018812	229615	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	0.100000	0.746269	
mm_120334.1	chr14	63436408	63436608	+	1	NA	NA	NA	114	NM_177628	219148	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.150000	0.711443	
mm_160956.1	chr11	98192832	98193032	-	1	NA	NA	NA	-26	NM_013634	19014	Mm.12926	NM_013634	ENSMUSG00000018160	Med1	AI480703|CRSP210|DRIP205|PBP|Pparbp|TRAP220|l11Jus15	mediator complex subunit 1	protein-coding	0.090000	0.676617	
mm_114493.1	chr13	69810066	69810266	+	1	NA	NA	NA	284	NM_138596	28077	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	0.090000	0.711443	
mm_47632.1	chr5	125300321	125300521	-	1	NA	NA	NA	40673	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.030000	0.522388	-38(GCTTTTATGAAC,+,0.00),51(TCCCATAAAGGG,-,0.00)
mm_156646.1	chrX	157699095	157699295	+	1	NA	NA	NA	222	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.030000	0.542289	
mm_7314.1	chr1	98095446	98095646	-	1	NA	NA	NA	86	NM_013626	18484	Mm.5121	NM_013626	ENSMUSG00000026335	Pam	PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding	0.145000	0.791045	
mm_131368.1	chr16	13819238	13819438	+	1	NA	NA	NA	87	NM_001346111	18203	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0.140000	0.771144	
mm_20489.1	chr2	130048494	130048694	-	1	NA	NA	NA	-32186	NR_105757	102466628		NR_105757	ENSMUSG00000098347	Mir6339	Gm27848|mmu-mir-6339	microRNA 6339	ncRNA	0.005000	0.562189	
mm_173090.1	chrX	150530075	150530275	+	1	NA	NA	NA	-17242	NM_009653	11656	Mm.302724	NM_009653	ENSMUSG00000025270	Alas2	ALAS|ALAS-E|ALASE|Alas-2	aminolevulinic acid synthase 2, erythroid	protein-coding	0.080000	0.696517	
mm_21477.1	chr2	162644519	162644719	-	1	NA	NA	NA	16528	NM_001291151	19281	Mm.235807	NM_021464	ENSMUSG00000053141	Ptprt	R-PTP-T|RPTP-rfo|RPTP-rho|RPTPmam4|RPTPrho|mKIAA0283|mRPTPrho	protein tyrosine phosphatase, receptor type, T	protein-coding	0.015000	0.522388	
mm_15057.1	chr2	152911666	152911866	+	1	NA	NA	NA	414	NM_001081044	228785	Mm.250604	NM_001081044	ENSMUSG00000027470	Mylk2	9830004H17Rik|BB138278	myosin, light polypeptide kinase 2, skeletal muscle	protein-coding	0.020000	0.562189	
mm_20791.1	chr2	144011085	144011285	-	1	NA	NA	NA	78	NM_133626	81910	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.125000	0.731343	
mm_160686.1	chr10	21160792	21160992	-	1	NA	NA	NA	92	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.060000	0.592040	
mm_1746.1	chr1	75495333	75495533	+	1	NA	NA	NA	11019	NM_178884	98733	Mm.236454	NM_178884	ENSMUSG00000026211	Obsl1	AW822216	obscurin-like 1	protein-coding	0.005000	0.482587	
mm_15059.1	chr2	152962363	152962563	+	1	NA	NA	NA	-22	NM_029064	74711	Mm.44746	NM_029064	ENSMUSG00000074673	Ttll9	1700016F23Rik|4930509O20Rik|AW046572	tubulin tyrosine ligase-like family, member 9	protein-coding	0.060000	0.547264	
mm_31748.1	chr4	63344506	63344706	+	1	NA	NA	NA	50	NM_008768	18405	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding	0.025000	0.522388	
mm_107755.1	chr12	59070355	59070555	+	1	NA	NA	NA	3536	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.005000	0.378109	-40(AAGTATATAAGG,-,0.00)
mm_102982.1	chr11	69681783	69681983	-	1	NA	NA	NA	87	NM_030702	80886	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0.115000	0.716418	
mm_76372.1	chr8	84800299	84800499	-	1	NA	NA	NA	-61	NM_001081982	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.165000	0.771144	
mm_165116.1	chr19	60580776	60580976	-	1	NA	NA	NA	147	NM_001172097	78832	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	0.110000	0.651741	
mm_105649.1	chr11	107132553	107132753	-	1	NA	NA	NA	-731	NM_176850	207165	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0.030000	0.577114	
mm_170554.1	chr19	41525190	41525390	+	1	NA	NA	NA	38	NM_001326287	627352	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0.045000	0.547264	
mm_70456.1	chr8	11810238	11810438	+	1	NA	NA	NA	-30183	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	0.035000	0.592040	
mm_124458.1	chr14	120278881	120279081	-	1	NA	NA	NA	3312	NM_175341	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding	0.010000	0.557214	
mm_3092.1	chr1	134415302	134415502	+	1	NA	NA	NA	24	NM_028320	72674	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.130000	0.726368	
mm_91019.1	chr10	17724230	17724430	-	1	NA	NA	NA	1102	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.030000	0.606965	
mm_118747.1	chr14	22330589	22330789	+	1	NA	NA	NA	212109	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.000000	0.427861	
mm_147271.1	chr18	38929287	38929487	-	1	NA	NA	NA	-10688	NM_010197	14164	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0.000000	0.547264	
mm_141714.1	chr17	34027905	34028105	-	1	NA	NA	NA	50	NM_013543	14979	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding	0.055000	0.671642	
mm_35435.1	chr4	36951624	36951824	-	1	NA	NA	NA	20	NM_001165999	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.135000	0.736318	
mm_15529.1	chr2	158382797	158382997	+	1	NA	NA	NA	7259	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.010000	0.343284	
mm_78417.1	chr9	31030456	31030656	+	1	NA	NA	NA	-88	NM_001115130	235132	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.145000	0.800995	
mm_56656.1	chr6	113434683	113434883	-	1	NA	NA	NA	972	NM_178373	14311	Mm.10026	NM_178373	ENSMUSG00000030278	Cidec	CIDE-3|Fsp27	cell death-inducing DFFA-like effector c	protein-coding	0.020000	0.601990	
mm_106859.1	chr12	8009173	8009373	+	1	NA	NA	NA	31596	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.427861	-47(GAGTATAAAAGT,-,0.00),74(GTCTTTATAGTC,+,0.00)
mm_75801.1	chr8	70139016	70139216	-	1	NA	NA	NA	81	NM_011266	19727	Mm.161167	NM_011266	ENSMUSG00000036120	Rfxank	Tvl1	regulatory factor X-associated ankyrin-containing protein	protein-coding	0.045000	0.492537	-90(CAGTCTTAAAGC,-,0.00)
mm_95160.1	chr11	36338525	36338725	+	1	NA	NA	NA	-358536	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.005000	0.407960	
mm_143461.1	chr17	70990846	70991046	-	1	NA	NA	NA	-430	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.045000	0.592040	
mm_69345.1	chr7	130200270	130200470	-	1	NA	NA	NA	66438	NM_010207	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	0.015000	0.343284	
mm_149479.1	chr19	11755697	11755897	+	1	NA	NA	NA	8238	NM_008118	14603	Mm.456	NM_008118	ENSMUSG00000024682	Gif	AV073125	gastric intrinsic factor	protein-coding	0.005000	0.442786	
mm_165818.1	chr3	146651230	146651430	-	1	NA	NA	NA	-13	NM_029144	75015	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.010000	0.477612	
mm_64503.1	chr7	143476046	143476246	+	1	NA	NA	NA	1030	NM_001042760	18400	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0.020000	0.616915	
mm_18180.1	chr2	45110283	45110483	-	1	NA	NA	NA	-106	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.055000	0.567164	
mm_19478.1	chr2	92978031	92978231	-	1	NA	NA	NA	-51217	NR_110333	433456	Mm.235231	NM_001002794	ENSMUSG00000075027	4631405J19Rik	-	RIKEN cDNA 4631405J19 gene	ncRNA	0.020000	0.442786	
mm_16163.1	chr2	172461279	172461479	+	1	NA	NA	NA	-2783	NM_001039560	654821	Mm.389337	NM_001039560	ENSMUSG00000074569	Gcnt7	A330041C17Rik|gnt	glucosaminyl (N-acetyl) transferase family member 7	protein-coding	0.025000	0.592040	
mm_75134.1	chr8	35053339	35053539	-	1	NA	NA	NA	-87749	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.000000	0.343284	
mm_47893.1	chr5	134721961	134722161	-	1	NA	NA	NA	25262	NM_007925	13717	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	0.005000	0.532338	
mm_89272.1	chr10	87860385	87860585	+	1	NA	NA	NA	-626	NM_001111274	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.025000	0.427861	
mm_74914.1	chr8	25306130	25306330	-	1	NA	NA	NA	40	NR_040352	74489	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0.020000	0.497512	
mm_101921.1	chr11	50200736	50200936	-	1	NA	NA	NA	9984	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.040000	0.562189	
mm_44529.1	chr5	24445093	24445293	-	1	NA	NA	NA	42	NM_023229	66587	Mm.28123	NM_023229	ENSMUSG00000028959	Fastk	0610011K02Rik|610011K02Rik	Fas-activated serine/threonine kinase	protein-coding	0.110000	0.751244	
mm_5231.1	chr1	14310017	14310217	-	1	NA	NA	NA	82	NM_001310459	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.050000	0.482587	-89(GCATTTAAACCA,+,0.00)
mm_167625.1	chr9	60597756	60597956	+	1	NA	NA	NA	-51974	NR_040463	100504561	Mm.410770	NR_040463	ENSMUSG00000111761	9230112J17Rik	-	RIKEN cDNA 9230112J17 gene	ncRNA	0.010000	0.432836	
mm_80990.1	chr9	103331078	103331278	+	1	NA	NA	NA	25851	NM_176979	235559	Mm.259893	NM_176979	ENSMUSG00000032555	Topbp1	1110031N14Rik|2810429C13Rik|AI256758|D430026L04Rik|mKIAA0259	topoisomerase (DNA) II binding protein 1	protein-coding	0.000000	0.343284	
mm_60256.1	chr7	43794049	43794249	+	1	NA	NA	NA	2258	NM_028660	101533	Mm.19942	NM_028660	ENSMUSG00000047884	Klk9	1200016C12Rik|AI324041	kallikrein related-peptidase 9	protein-coding	0.010000	0.572139	
mm_46122.1	chr5	92443525	92443725	-	1	NA	NA	NA	-8426	NM_183392	269113	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.005000	0.447761	
mm_11654.1	chr2	34963602	34963802	+	1	NA	NA	NA	-1930	NM_001326601	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.025000	0.492537	68(CAGTTTATATGG,-,0.00),70(GTTTATATGGAG,+,0.00)
mm_3685.1	chr1	153749328	153749528	+	1	NA	NA	NA	2	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.025000	0.467662	
mm_4003.1	chr1	164796609	164796809	+	1	NA	NA	NA	-23	NM_019759	56429	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	0.015000	0.542289	
mm_106075.1	chr11	116173214	116173414	-	1	NA	NA	NA	-5136	NM_172571	217335	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.030000	0.462687	
mm_79019.1	chr9	45852648	45852848	+	1	NA	NA	NA	14203	NM_011792	23821	Mm.24044	NM_011792	ENSMUSG00000032086	Bace1	ASP2|Bace|C76936	beta-site APP cleaving enzyme 1	protein-coding	0.030000	0.587065	
mm_127516.1	chr15	101854656	101854856	+	1	NA	NA	NA	-3970	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.010000	0.567164	-33(GGCTTTTTAAGG,-,0.00),-31(CTTTTTAAGGAA,+,0.00)
mm_143027.1	chr17	56584500	56584700	-	1	NA	NA	NA	-17	NM_001029979	224902	Mm.214973	NM_001029979	ENSMUSG00000042625	Safb2	AA389433|AI255170|mKIAA0138	scaffold attachment factor B2	protein-coding	0.095000	0.666667	
mm_51333.1	chr6	72366990	72367190	+	1	NA	NA	NA	-118	NM_001331167	66510	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0.005000	0.373134	
mm_89703.1	chr10	97647025	97647225	+	1	NA	NA	NA	3057	NM_007884	13516	Mm.148886	NM_007884	ENSMUSG00000019936	Epyc	Dspg3|PG-Lb|SLRR3B	epiphycan	protein-coding	0.015000	0.333333	
mm_111506.1	chr12	99563507	99563707	-	1	NA	NA	NA	-234	NR_136760	102639404	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.165000	0.825871	
mm_9334.1	chr1	172004044	172004244	-	1	NA	NA	NA	23151	NM_033509	93840	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	vang-like 2 (van gogh, Drosophila)	protein-coding	0.025000	0.557214	
mm_13261.1	chr2	98666189	98666389	+	1	NA	NA	NA	1198632	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.015000	0.343284	
mm_34116.1	chr4	139205104	139205304	+	1	NA	NA	NA	11093	NM_001271405	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.010000	0.557214	
mm_79867.1	chr9	65077883	65078083	+	1	NA	NA	NA	-23503	NM_001290315	56741	Mm.209041	NM_020043	ENSMUSG00000032816	Igdcc4	DDM36|Nope	immunoglobulin superfamily, DCC subclass, member 4	protein-coding	0.015000	0.497512	
mm_154113.1	chr19	57134899	57135099	-	1	NA	NA	NA	-15975	NM_001103178	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.020000	0.502488	
mm_143403.1	chr17	70755358	70755558	-	1	NA	NA	NA	91319	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.015000	0.532338	-80(TGCCATTAAAAG,-,0.00),-78(CCATTAAAAGAA,+,0.00)
mm_16315.1	chr2	174304224	174304424	+	1	NA	NA	NA	6465	NM_001310085	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.000000	0.422886	
mm_110562.1	chr12	55820925	55821125	-	1	NA	NA	NA	491	NM_019994	56784	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0.135000	0.731343	
mm_83320.1	chr9	44148161	44148361	-	1	NA	NA	NA	13603	NM_023061	84004	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.010000	0.447761	9(GCTTTTCTAGTC,+,0.00)
mm_87128.1	chr10	33904931	33905131	+	1	NA	NA	NA	-80	NM_001162957	212892	Mm.131949	NM_001162957	ENSMUSG00000039552	Rsph4a	A230081C05|Rshl3	radial spoke head 4 homolog A (Chlamydomonas)	protein-coding	0.030000	0.477612	
mm_61302.1	chr7	67951671	67951871	+	1	NA	NA	NA	-486	NM_010513	16001	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.175000	0.805970	
mm_134141.1	chr16	10772095	10772295	-	1	NA	NA	NA	13341	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.020000	0.592040	
mm_128833.1	chr15	68258757	68258957	-	1	NA	NA	NA	-1	NM_198644	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.110000	0.592040	
mm_77474.1	chr8	122432835	122433035	-	1	NA	NA	NA	5	NM_001301284	13057	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.050000	0.676617	
mm_44498.1	chr5	23712576	23712776	-	1	NA	NA	NA	-9	NR_015554	433855	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	0.105000	0.681592	
mm_122536.1	chr14	47395685	47395885	-	1	NA	NA	NA	21925	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.020000	0.517413	
mm_11813.1	chr2	43976525	43976725	+	1	NA	NA	NA	88699	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.000000	0.368159	-38(GCTTTTCTACCC,+,0.00)
mm_163540.1	chr13	14487757	14487957	+	1	NA	NA	NA	35369	NM_001081348	94253	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.000000	0.373134	
mm_153363.1	chr19	40231103	40231303	-	1	NA	NA	NA	40413	NM_016861	54132	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	0.020000	0.582090	
mm_147997.1	chr18	67677648	67677848	-	1	NA	NA	NA	36149	NM_134138	107047	Mm.150701	NM_134138	ENSMUSG00000024537	Psmg2	1700017I17Rik|AW545363|Clast3|Tnfsf5ip1	proteasome (prosome, macropain) assembly chaperone 2	protein-coding	0.010000	0.373134	
mm_116248.1	chr13	33935878	33936078	-	1	NA	NA	NA	-54	NR_040707	68808	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0.065000	0.616915	-32(GTATTTAAGGCC,+,0.00)
mm_122988.1	chr14	54985053	54985253	-	1	NA	NA	NA	-9377	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.030000	0.601990	
mm_26228.1	chr3	139075402	139075602	+	1	NA	NA	NA	-301	NM_001040690	229877	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.105000	0.721393	
mm_145605.1	chr18	61096553	61096753	+	1	NA	NA	NA	-8919	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.035000	0.472637	
mm_121420.1	chr14	119875622	119875822	+	1	NA	NA	NA	126495	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA	0.010000	0.427861	
mm_30995.1	chr4	39450224	39450424	+	1	NA	NA	NA	31	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0.010000	0.512438	
mm_90395.1	chr10	127323661	127323861	+	1	NA	NA	NA	34	NM_146011	216445	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.030000	0.587065	
mm_157550.1	chrX	51681280	51681480	-	1	NA	NA	NA	222	NM_001077202	50786	Mm.252561	NM_015819	ENSMUSG00000062184	Hs6st2	6OST2	heparan sulfate 6-O-sulfotransferase 2	protein-coding	0.110000	0.706468	
mm_61381.1	chr7	71229213	71229413	+	1	NA	NA	NA	-680382	NR_130995	78156	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	0.010000	0.412935	-20(CCCTTGAAAAGG,-,0.00)
mm_29465.1	chr3	113577637	113577837	-	1	NA	NA	NA	13	NM_001110505	11722	Mm.439727	NM_007446	ENSMUSG00000074264	Amy1	Amy-1|Amy1a|C030014B17Rik	amylase 1, salivary	protein-coding	0.005000	0.368159	
mm_16164.1	chr2	172472424	172472624	+	1	NA	NA	NA	-30	NM_029608	76426	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	0.025000	0.592040	
mm_166244.1	chr5	74921984	74922184	+	1	NA	NA	NA	-27110	NR_045866	619945	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.005000	0.373134	
mm_92593.1	chr10	80075374	80075574	-	1	NA	NA	NA	21455	NM_001037741	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.040000	0.592040	
mm_125525.1	chr15	57777214	57777414	+	1	NA	NA	NA	82647	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.020000	0.343284	
mm_160960.1	chr11	98982894	98983094	-	1	NA	NA	NA	22	NM_178596	353155	Mm.453253	NM_178596	ENSMUSG00000047197	Gjd3	Gja11|Gjc1|cx30.2	gap junction protein, delta 3	protein-coding	0.065000	0.676617	
mm_165905.1	chr4	51812545	51812745	-	1	NA	NA	NA	238465	NR_040668	329844	Mm.128934	NR_040668	ENSMUSG00000085515	C630028M04Rik	-	RIKEN cDNA C630028M04 gene	ncRNA	0.015000	0.447761	
mm_35271.1	chr4	19908451	19908651	-	1	NA	NA	NA	14015	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.000000	0.328358	
mm_69413.1	chr7	132576246	132576446	-	1	NA	NA	NA	52	NM_016978	18242	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0.120000	0.646766	
mm_46727.1	chr5	110770495	110770695	-	1	NA	NA	NA	122	NM_029337	75560	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	0.165000	0.721393	
mm_58115.1	chr6	138426597	138426797	-	1	NA	NA	NA	3592	NR_126072	319702	Mm.403785	NR_126072	ENSMUSG00000089957	A830011K09Rik	-	RIKEN cDNA A830011K09 gene	ncRNA	0.030000	0.537313	
mm_83314.1	chr9	44130076	44130276	-	1	NA	NA	NA	-4482	NM_023061	84004	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.070000	0.597015	
mm_140734.1	chr17	15704327	15704527	-	1	NA	NA	NA	-540	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.045000	0.542289	
mm_103526.1	chr11	77046376	77046576	-	1	NA	NA	NA	31696	NR_030756	751519		NR_030756	ENSMUSG00000065518	Mir423	Mirn423|mir-423|mmu-mir-423	microRNA 423	ncRNA	0.040000	0.582090	
mm_148956.1	chr19	7383029	7383229	+	1	NA	NA	NA	-103	NM_001167831	68229	Mm.34766	NM_001033139	ENSMUSG00000024970	AI846148	1700105P06Rik	expressed sequence AI846148	protein-coding	0.085000	0.686567	
mm_97075.1	chr11	72999033	72999233	+	1	NA	NA	NA	-12	NM_008771	18436	Mm.25722	NM_008771	ENSMUSG00000020787	P2rx1	AI323649|BB122383|P2x|Pdcd3|RP-2	purinergic receptor P2X, ligand-gated ion channel, 1	protein-coding	0.015000	0.567164	
mm_125530.1	chr15	57975291	57975491	+	1	NA	NA	NA	-10512	NM_173862	239463	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.035000	0.507463	
mm_50473.1	chr6	48987858	48988058	+	1	NA	NA	NA	1097	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.010000	0.537313	
mm_41003.1	chr5	77465390	77465590	+	1	NA	NA	NA	2	NR_131050	69370	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0.035000	0.507463	
mm_166386.1	chr5	132992970	132993170	+	1	NA	NA	NA	-450727	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.000000	0.492537	
mm_13353.1	chr2	103073676	103073876	+	1	NA	NA	NA	101	NM_019735	56369	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	0.090000	0.636816	
mm_114538.1	chr13	73703622	73703822	+	1	NA	NA	NA	-3027	NM_028878	74338	Mm.271635	NM_028878	ENSMUSG00000021565	Slc6a19	4632401C08Rik|B<0>AT1	solute carrier family 6 (neurotransmitter transporter), member 19	protein-coding	0.015000	0.467662	
mm_86442.1	chr10	4089847	4090047	+	1	NA	NA	NA	116872	NM_172308	270685	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.035000	0.417910	-33(TTCTATATAAAC,-,0.00)
mm_89798.1	chr10	102512232	102512432	+	1	NA	NA	NA	110	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding	0.005000	0.502488	86(GAGTTGAAAAGG,-,0.00)
mm_119534.1	chr14	47668307	47668507	+	1	NA	NA	NA	4651	NM_001347522	16709	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	0.000000	0.323383	
mm_105298.1	chr11	102480990	102481190	-	1	NA	NA	NA	-11207	NM_010575	16399	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0.000000	0.457711	
mm_29866.1	chr3	130061476	130061676	-	1	NA	NA	NA	-669	NM_207209	99683	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.030000	0.467662	
mm_4400.1	chr1	172376512	172376712	+	1	NA	NA	NA	81	NM_026234	67556	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	0.100000	0.696517	
mm_119910.1	chr14	54952190	54952390	+	1	NA	NA	NA	-3148	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.025000	0.542289	
mm_14039.1	chr2	122186177	122186377	+	1	NA	NA	NA	5	NM_028914	74401	Mm.374834	NM_028914	ENSMUSG00000027229	Terb2	4933406J08Rik	telomere repeat binding bouquet formation protein 2	protein-coding	0.040000	0.597015	
mm_42388.1	chr5	114936856	114937056	+	1	NA	NA	NA	-5246	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.035000	0.527363	
mm_19133.1	chr2	80292306	80292506	-	1	NA	NA	NA	-64	NM_177256	320769	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	0.015000	0.398010	
mm_164912.1	chr18	73382735	73382935	+	1	NA	NA	NA	-189870	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.010000	0.278607	
mm_108600.1	chr12	85468761	85468961	+	1	NA	NA	NA	-5040	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.030000	0.492537	
mm_121170.1	chr14	103015020	103015220	+	1	NA	NA	NA	18683	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.000000	0.567164	
mm_164279.1	chr15	102150480	102150680	+	1	NA	NA	NA	5	NM_146064	223920	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	0.020000	0.527363	
mm_41662.1	chr5	99217741	99217941	+	1	NA	NA	NA	35086	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.005000	0.353234	
mm_15964.1	chr2	166035415	166035615	+	1	NA	NA	NA	42878	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.005000	0.393035	
mm_125632.1	chr15	61990007	61990207	+	1	NA	NA	NA	4766	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.000000	0.313433	-23(TAGTATAAAAGA,-,0.00)
mm_168987.1	chr12	97038303	97038503	+	1	NA	NA	NA	-991181	NR_103800	69423	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0.015000	0.517413	
mm_91143.1	chr10	19907525	19907725	-	1	NA	NA	NA	49	NM_008822	18634	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	0.140000	0.681592	
mm_139136.1	chr17	47509330	47509530	+	1	NA	NA	NA	4379	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.422886	-78(GCCTTTTTAAGT,-,0.00)
mm_4153.1	chr1	171019768	171019968	+	1	NA	NA	NA	942	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.010000	0.547264	
mm_133330.1	chr16	78376020	78376220	+	1	NA	NA	NA	637	NR_002700	654432	Mm.458574	NR_002700	ENSMUSG00000044645	Gm7334	EG654432	B-cell translocation gene 3 pseudogene	pseudo	0.070000	0.641791	
mm_76044.1	chr8	77517864	77518064	-	1	NA	NA	NA	-57	NM_030113	78514	Mm.165974	NM_030113	ENSMUSG00000037148	Arhgap10	A930033B01Rik|PSGAP-m|PSGAP-s	Rho GTPase activating protein 10	protein-coding	0.135000	0.810945	
mm_17183.1	chr2	25460819	25461019	-	1	NA	NA	NA	175	NM_153557	227622	Mm.261780	NM_153557	ENSMUSG00000047617	BC029214	D930050G13Rik|Paxx	cDNA sequence BC029214	protein-coding	0.095000	0.631841	
mm_117733.1	chr13	95618389	95618589	-	1	NA	NA	NA	-56	NM_010169	14062	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	0.140000	0.736318	
mm_150630.1	chr19	41345127	41345327	+	1	NA	NA	NA	39843	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.020000	0.447761	-3(TGGTTTAAATGG,-,0.00)
mm_68143.1	chr7	102245325	102245525	-	1	NA	NA	NA	4693	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.000000	0.512438	-53(TGGCATTAAAGG,-,0.00)
mm_76739.1	chr8	95198605	95198805	-	1	NA	NA	NA	-56165	NM_001145831	16582	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.000000	0.338308	
mm_115686.1	chr13	13564602	13564802	-	1	NA	NA	NA	-25707	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.015000	0.512438	
mm_71894.1	chr8	69849231	69849431	+	1	NA	NA	NA	16627	NM_001024954	80720	Mm.210823	NM_030555	ENSMUSG00000031860	Pbx4	2410015M21Rik|AI429113|AW045266	pre B cell leukemia homeobox 4	protein-coding	0.010000	0.507463	60(CTGTTTTAAAAG,-,0.00),61(TGTTTTAAAAGG,-,0.00),62(GTTTTAAAAGGG,+,0.00)
mm_168227.1	chr10	79960089	79960289	+	1	NA	NA	NA	37	NM_175450	216156	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.075000	0.636816	
mm_131740.1	chr16	22047496	22047696	+	1	NA	NA	NA	38112	NR_027488	75826	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.000000	0.447761	
mm_82405.1	chr9	14771061	14771261	-	1	NA	NA	NA	-131	NM_029306	69325	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	0.015000	0.542289	
mm_126240.1	chr15	79002158	79002358	+	1	NA	NA	NA	35	NR_105921	102465577		NR_105921	ENSMUSG00000099180	Mir6956	Gm27880|mmu-mir-6956	microRNA 6956	ncRNA	0.055000	0.676617	
mm_43563.1	chr5	137630020	137630220	+	1	NA	NA	NA	997	NR_033148	100316903	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0.000000	0.507463	
mm_159172.1	chr2	106970377	106970577	-	1	NA	NA	NA	-86	NM_173750	212772	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	0.000000	0.422886	
mm_123970.1	chr14	75130826	75131026	-	1	NA	NA	NA	-43	NM_027581	70859	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	0.055000	0.616915	
mm_9458.1	chr1	172894842	172895042	-	1	NA	NA	NA	112	NM_011318	20219	Mm.330510	NM_011318	ENSMUSG00000026542	Apcs	Sap	serum amyloid P-component	protein-coding	0.000000	0.457711	
mm_40218.1	chr5	37228990	37229190	+	1	NA	NA	NA	-12968	NM_001136058	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.020000	0.582090	
mm_79891.1	chr9	65294342	65294542	+	1	NA	NA	NA	182	NM_011802	270166	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0.120000	0.696517	
mm_71646.1	chr8	58523195	58523395	+	1	NA	NA	NA	177501	NM_001177534	100271928	Mm.484123	NM_001177534		Gm15881	OTTMUSG00000027193	predicted gene 15881	protein-coding	0.005000	0.482587	
mm_90100.1	chr10	116966134	116966334	+	1	NA	NA	NA	-40	NR_027846	103175	Mm.27138	NR_027846	ENSMUSG00000031294	D630029K05Rik	AI314111|AI875589	RIKEN cDNA D630029K05 gene	ncRNA	0.025000	0.557214	
mm_13858.1	chr2	119711377	119711577	+	1	NA	NA	NA	-30860	NM_146125	228550	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	0.010000	0.537313	
mm_146027.1	chr18	69519820	69520020	+	1	NA	NA	NA	174199	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.020000	0.477612	
mm_93834.1	chr10	121586719	121586919	-	1	NA	NA	NA	-25	NM_019786	56480	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.150000	0.771144	
mm_64096.1	chr7	141006609	141006809	+	1	NA	NA	NA	4035	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.015000	0.522388	
mm_84993.1	chr9	86695574	86695774	-	1	NA	NA	NA	232	NR_045835	319556	Mm.386894	NR_045835	ENSMUSG00000087466	A330041J22Rik	-	RIKEN cDNA A330041J22 gene	ncRNA	0.125000	0.786070	
mm_93370.1	chr10	105315590	105315790	-	1	NA	NA	NA	258789	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.020000	0.457711	
mm_7071.1	chr1	87854153	87854353	-	1	NA	NA	NA	46	NR_136921	100503175	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.030000	0.582090	
mm_134162.1	chr16	10792001	10792201	-	1	NA	NA	NA	4	NM_008933	19119	Mm.325769	NM_008933	ENSMUSG00000038015	Prm2	AI528784|Prm-2	protamine 2	protein-coding	0.010000	0.572139	
mm_54228.1	chr6	28212797	28212997	-	1	NA	NA	NA	48704	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.005000	0.338308	
mm_91223.1	chr10	22058523	22058723	-	1	NA	NA	NA	9456	NM_053264	114671	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	0.055000	0.681592	
mm_89235.1	chr10	87581763	87581963	+	1	NA	NA	NA	60068	NM_008777	18478	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0.015000	0.482587	-61(GTCTTTAAATGG,-,0.00)
mm_130107.1	chr15	89429793	89429993	-	1	NA	NA	NA	34	NR_037154	12651	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	0.090000	0.626866	
mm_150021.1	chr19	29372220	29372420	+	1	NA	NA	NA	4882	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.010000	0.422886	34(GCTTTTAGGGCT,+,0.00)
mm_94502.1	chr11	7197708	7197908	+	1	NA	NA	NA	21	NM_008341	16006	Mm.21300	NM_008341	ENSMUSG00000020429	Igfbp1	-	insulin-like growth factor binding protein 1	protein-coding	0.045000	0.582090	
mm_157107.1	chrX	9437795	9437995	-	1	NA	NA	NA	31429	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.422886	45(CCTTTAATACCA,+,0.00)
mm_34610.1	chr4	150282705	150282905	+	1	NA	NA	NA	889	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.000000	0.328358	
mm_156250.1	chrX	136339963	136340163	+	1	NA	NA	NA	69810	NM_001110234	12070	Mm.90787	NM_009750	ENSMUSG00000046432	Bex3	AL033356|DXWsu67e|Gcap27|Nade|Ngfrap1	brain expressed X-linked 3	protein-coding	0.040000	0.447761	-29(CACTTTAAAAGA,-,0.00)
mm_123520.1	chr14	66296871	66297071	-	1	NA	NA	NA	-54	NM_029979	66854	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	0.075000	0.616915	
mm_161541.1	chr15	103013960	103014160	+	1	NA	NA	NA	52	NM_175730	15424	Mm.103825	NM_175730	ENSMUSG00000022485	Hoxc5	AI181837|Hox-3.4|Hox-6.2	homeobox C5	protein-coding	0.010000	0.427861	
mm_38483.1	chr4	140750455	140750655	-	1	NA	NA	NA	-7912	NM_153106	242726	Mm.271661	NM_153106	ENSMUSG00000040935	Padi6	Pad6|Padi5|ePAD	peptidyl arginine deiminase, type VI	protein-coding	0.050000	0.611940	
mm_36206.1	chr4	62408553	62408753	-	1	NA	NA	NA	-30	NM_139291	66440	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	0.040000	0.577114	
mm_11060.1	chr2	27506757	27506957	+	1	NA	NA	NA	-8290	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.020000	0.452736	
mm_82151.1	chr9	123774920	123775120	+	1	NA	NA	NA	7809	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.015000	0.427861	65(CCTTTAAAACAC,+,0.00)
mm_67716.1	chr7	90019548	90019748	-	1	NA	NA	NA	-9511	NR_110365	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	0.025000	0.432836	
mm_127602.1	chr15	102402312	102402512	+	1	NA	NA	NA	-3904	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.000000	0.447761	
mm_72608.1	chr8	84589573	84589773	+	1	NA	NA	NA	73179	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.010000	0.547264	14(TCCTTTATAAGA,-,0.00)
mm_48628.1	chr5	145136303	145136503	-	1	NA	NA	NA	3686	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.000000	0.532338	
mm_169540.1	chr15	100353083	100353283	+	1	NA	NA	NA	-17	NM_001024672	554292	Mm.268451	NM_001024672	ENSMUSG00000093789	Methig1	Mettl7a2-Higd1c|Mettl7a2Higd1c|Mettl7a2higd1c|UbiE-YGHL1	methyltransferase hypoxia inducible domain containing 1	protein-coding	0.030000	0.527363	
mm_83422.1	chr9	44969673	44969873	-	1	NA	NA	NA	-4173	NM_145400	140630	Mm.215069	NM_145400	ENSMUSG00000059890	Ube4a	4732444G18Rik|9930123J21Rik|UFD2b	ubiquitination factor E4A	protein-coding	0.000000	0.442786	
mm_40599.1	chr5	64264140	64264340	+	1	NA	NA	NA	33883	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.035000	0.497512	
mm_22324.1	chr2	180642514	180642714	-	1	NA	NA	NA	77	NM_178254	277353	Mm.473700	NM_178254	ENSMUSG00000038932	Tcfl5	AV260129|Figlb|Sosf1	transcription factor-like 5 (basic helix-loop-helix)	protein-coding	0.240000	0.880597	
mm_17402.1	chr2	27215083	27215283	-	1	NA	NA	NA	32120	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.015000	0.552239	
mm_88290.1	chr10	75222042	75222242	+	1	NA	NA	NA	9752	NM_001145826	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.010000	0.492537	
mm_49960.1	chr6	40634992	40635192	+	1	NA	NA	NA	6261	NM_001171003	232714	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding	0.010000	0.402985	
mm_39359.1	chr5	9104725	9104925	+	1	NA	NA	NA	4088	NM_001081029	652925	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.010000	0.447761	
mm_79966.1	chr9	66394226	66394426	+	1	NA	NA	NA	43876	NM_145617	235439	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.000000	0.293532	
mm_35029.1	chr4	4019471	4019671	-	1	NA	NA	NA	92	NM_181989	242285	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	0.030000	0.592040	
mm_21687.1	chr2	164432115	164432315	-	1	NA	NA	NA	10973	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.025000	0.552239	
mm_21873.1	chr2	165993636	165993836	-	1	NA	NA	NA	1099	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.030000	0.492537	
mm_106678.1	chr11	121925229	121925429	-	1	NA	NA	NA	95111	NM_029049	74675	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.045000	0.542289	
mm_152245.1	chr19	8714210	8714410	-	1	NA	NA	NA	-413	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.020000	0.462687	
mm_48134.1	chr5	137150044	137150244	-	1	NA	NA	NA	-33937	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.512438	
mm_114849.1	chr13	92846562	92846762	+	1	NA	NA	NA	1875	NM_001162945	382793	Mm.296770	NM_001162945	ENSMUSG00000021704	Mtx3	4930470O13Rik|AA409304|AI853833|AU067765|EG624619|Gm1194|Gm6514	metaxin 3	protein-coding	0.005000	0.333333	
mm_40591.1	chr5	64230236	64230436	+	1	NA	NA	NA	-21	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.140000	0.781095	
mm_49569.1	chr6	30640431	30640631	+	1	NA	NA	NA	1313	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.040000	0.562189	
mm_153492.1	chr19	41324571	41324771	-	1	NA	NA	NA	60399	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.030000	0.537313	
mm_1923.1	chr1	86045844	86046044	+	1	NA	NA	NA	81	NM_001144992	72792	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	0.130000	0.766169	
mm_125155.1	chr15	31004685	31004885	+	1	NA	NA	NA	-34341	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.015000	0.482587	
mm_67431.1	chr7	80371183	80371383	-	1	NA	NA	NA	92	NM_172903	140481	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	0.160000	0.825871	
mm_4677.1	chr1	180423353	180423553	+	1	NA	NA	NA	60051	NM_001081227	381310	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|ENSMUSG00000056615|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.045000	0.572139	-29(ATGTTTAAAAAG,-,0.00)
mm_67846.1	chr7	98562921	98563121	-	1	NA	NA	NA	68799	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.005000	0.547264	
mm_58980.1	chr7	19075994	19076194	+	1	NA	NA	NA	-106	NM_010058	13401	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0.085000	0.626866	
mm_39592.1	chr5	23496409	23496609	+	1	NA	NA	NA	62080	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.005000	0.487562	
mm_149659.1	chr19	18713134	18713334	+	1	NA	NA	NA	-2	NM_177640	225995	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	0.145000	0.741294	
mm_146160.1	chr18	75043008	75043208	+	1	NA	NA	NA	24336	NM_027727	69190	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	0.035000	0.427861	
mm_131383.1	chr16	14163234	14163434	+	1	NA	NA	NA	59	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.130000	0.726368	
mm_144089.1	chr18	3005552	3005752	+	1	NA	NA	NA	117760	NM_001167539	100312476	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.005000	0.482587	
mm_115677.1	chr13	13005293	13005493	-	1	NA	NA	NA	-63	NM_031191	18811	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0.010000	0.442786	-33(GACTATATAAGA,-,0.00)
mm_68341.1	chr7	106506267	106506467	-	1	NA	NA	NA	-65294	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.393035	
mm_92926.1	chr10	84440567	84440767	-	1	NA	NA	NA	-196	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.140000	0.766169	
mm_164311.1	chr15	103897425	103897625	-	1	NA	NA	NA	1775	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.005000	0.393035	
mm_96948.1	chr11	70562769	70562969	+	1	NA	NA	NA	-12	NM_001045964	50932	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	0.160000	0.796020	
mm_9573.1	chr1	173979828	173980028	-	1	NA	NA	NA	2916	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.005000	0.402985	
mm_145367.1	chr18	56733055	56733255	+	1	NA	NA	NA	25342	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.015000	0.477612	
mm_6704.1	chr1	82236990	82237190	-	1	NA	NA	NA	54349	NM_010570	16367	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.000000	0.278607	26(CTGTTTTAAAGA,-,0.00)
mm_107592.1	chr12	49377565	49377765	+	1	NA	NA	NA	-5218	NM_001160112	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.020000	0.492537	-36(ACCTATAAAGCC,+,0.00)
mm_149771.1	chr19	23061479	23061679	+	1	NA	NA	NA	-79647	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.015000	0.437811	
mm_107306.1	chr12	31073853	31074053	+	1	NA	NA	NA	-15	NM_027828	104943	Mm.248938	NM_027828	ENSMUSG00000036136	Fam110c	9030611O19Rik|AU019489	family with sequence similarity 110, member C	protein-coding	0.080000	0.646766	
mm_127776.1	chr15	3341004	3341204	-	1	NA	NA	NA	-37578	NM_001166063	100039139	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	ENSMUSG00000071814	coiled-coil domain containing 152	protein-coding	0.010000	0.368159	
mm_11037.1	chr2	26973394	26973594	+	1	NA	NA	NA	78	NM_001290465	279028	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	0.015000	0.547264	
mm_162050.1	chrX	6779188	6779388	+	1	NA	NA	NA	-94196	NM_177914	331374	Mm.392752	NM_177914	ENSMUSG00000062393	Dgkk	Gm360	diacylglycerol kinase kappa	protein-coding	0.070000	0.701493	
mm_160215.1	chr7	98836161	98836361	+	1	NA	NA	NA	1149	NM_001285792	22411	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.065000	0.557214	
mm_70662.1	chr8	14881523	14881723	+	1	NA	NA	NA	-6913	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.015000	0.527363	
mm_50050.1	chr6	41177355	41177555	+	1	NA	NA	NA	-124817	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.010000	0.442786	-39(TGACTTAAAAGG,-,0.00),-8(GCTTTTAAGCAT,+,0.00)
mm_137278.1	chr17	24720157	24720357	+	1	NA	NA	NA	194	NM_008503	16898	Mm.157452	NM_008503	ENSMUSG00000044533	Rps2	Llrep3|S4	ribosomal protein S2	protein-coding	0.085000	0.626866	
mm_87312.1	chr10	42767008	42767208	+	1	NA	NA	NA	5612	NM_153055	140740	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0.000000	0.432836	
mm_151500.1	chr19	58728873	58729073	+	1	NA	NA	NA	86	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.015000	0.557214	-33(GAGCATAAAAAG,-,0.00)
mm_10123.1	chr2	3749211	3749411	+	1	NA	NA	NA	35853	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.020000	0.557214	
mm_152829.1	chr19	23141966	23142166	-	1	NA	NA	NA	840	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.070000	0.611940	
mm_64835.1	chr7	12991523	12991723	-	1	NA	NA	NA	6569	NM_009512	26459	Mm.10984	NM_009512	ENSMUSG00000030382	Slc27a5	FACVL3|FATP5|VLCS-H2|VLCSH2|Vlacsr	solute carrier family 27 (fatty acid transporter), member 5	protein-coding	0.000000	0.353234	
mm_162486.1	chr1	135746684	135746884	+	1	NA	NA	NA	17587	NM_007791	13007	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.040000	0.592040	
mm_140521.1	chr17	6106414	6106614	-	1	NA	NA	NA	-316	NM_001103181	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.055000	0.601990	
mm_70300.1	chr8	4087394	4087594	+	1	NA	NA	NA	18270	NM_026956	69142	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	0.070000	0.661692	
mm_78962.1	chr9	45246230	45246430	+	1	NA	NA	NA	20377	NR_106054	102466803		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.025000	0.547264	
mm_125371.1	chr15	39962530	39962730	+	1	NA	NA	NA	-19	NR_045719	105976	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0.010000	0.447761	
mm_153933.1	chr19	47432534	47432734	-	1	NA	NA	NA	31777	NM_001164717	14218	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.020000	0.572139	
mm_68079.1	chr7	101870509	101870709	-	1	NA	NA	NA	179	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.010000	0.507463	
mm_106350.1	chr11	118393429	118393629	-	1	NA	NA	NA	8402	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.020000	0.517413	
mm_121157.1	chr14	102981280	102981480	+	1	NA	NA	NA	1252	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.050000	0.631841	
mm_104515.1	chr11	96006065	96006265	-	1	NA	NA	NA	-221	NM_009951	140486	Mm.294769	NM_009951	ENSMUSG00000013415	Igf2bp1	AL024068|AW549074|CRD-BP|Crdbp|D030026A21Rik|D11Moh40e|D11Moh45|IMP-1|IMP1|Neilsen|ZBP-1|Zbp1|mir-3063	insulin-like growth factor 2 mRNA binding protein 1	protein-coding	0.060000	0.676617	
mm_46424.1	chr5	104133878	104134078	-	1	NA	NA	NA	-19890	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding	0.015000	0.512438	-33(GGGTATATAAGG,-,0.00)
mm_1598.1	chr1	74375183	74375383	+	1	NA	NA	NA	80	NM_013612	18173	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.020000	0.597015	
mm_66771.1	chr7	46795592	46795792	-	1	NA	NA	NA	189	NM_001005248	246694	Mm.379442	NM_178742	ENSMUSG00000014418	Hps5	AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2	Hermansky-Pudlak syndrome 5	protein-coding	0.065000	0.646766	
mm_131990.1	chr16	25042277	25042477	+	1	NA	NA	NA	-17262	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.005000	0.452736	
mm_77429.1	chr8	121125538	121125738	-	1	NA	NA	NA	-2047	NM_008024	14241	Mm.5111	NM_008024	ENSMUSG00000097084	Foxl1	FREAC7|Fkh6|fkh-6	forkhead box L1	protein-coding	0.075000	0.651741	
mm_131552.1	chr16	17921959	17922159	+	1	NA	NA	NA	6160	NM_153150	13358	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0.100000	0.621891	
mm_865.1	chr1	52150753	52150953	+	1	NA	NA	NA	31231	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.040000	0.626866	
mm_90603.1	chr10	128322485	128322685	+	1	NA	NA	NA	126	NM_019953	56530	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy FGF signaling regulator 2	protein-coding	0.075000	0.661692	
mm_23877.1	chr3	83030738	83030938	+	1	NA	NA	NA	4685	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.015000	0.393035	
mm_140383.1	chr17	87119158	87119358	+	1	NA	NA	NA	11579	NM_019654	56468	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0.010000	0.482587	
mm_119549.1	chr14	48538257	48538457	+	1	NA	NA	NA	92005	NR_132324	218989	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	0.015000	0.512438	
mm_121059.1	chr14	87416636	87416836	+	1	NA	NA	NA	153	NM_001253755	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0.050000	0.532338	
mm_58499.1	chr7	3704934	3705134	+	1	NA	NA	NA	993	NM_029767	76846	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	0.010000	0.432836	
mm_92137.1	chr10	66911319	66911519	-	1	NA	NA	NA	8965	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.020000	0.542289	
mm_109777.1	chr12	119135916	119136116	+	1	NA	NA	NA	102260	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.020000	0.507463	
mm_172607.1	chr8	15519953	15520153	+	1	NA	NA	NA	462400	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.065000	0.492537	-40(AACTTTAAATGG,-,0.00)
mm_38008.1	chr4	133723061	133723261	-	1	NA	NA	NA	-6053	NR_106086	102465707		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	0.000000	0.323383	
mm_94027.1	chr10	127751579	127751779	-	1	NA	NA	NA	119	NM_007412	11536	Mm.2857	NM_007412	ENSMUSG00000058396	Gpr182	AM-R|Admr|G10-D|Gpcr17|Gpcr22|MB10|NOW	G protein-coupled receptor 182	protein-coding	0.015000	0.616915	
mm_115645.1	chr13	12278821	12279021	-	1	NA	NA	NA	-20808	NM_001081128	238505	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.030000	0.582090	
mm_167462.1	chr8	123891695	123891895	-	1	NA	NA	NA	2980	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.030000	0.442786	
mm_93621.1	chr10	117277750	117277950	-	1	NA	NA	NA	4422	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.005000	0.457711	
mm_61304.1	chr7	67951935	67952135	+	1	NA	NA	NA	-222	NM_010513	16001	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.110000	0.681592	
mm_66040.1	chr7	30660157	30660357	-	1	NA	NA	NA	4737	NM_027999	71909	Mm.290410	NM_027999	ENSMUSG00000078762	Haus5	2310022K01Rik	HAUS augmin-like complex, subunit 5	protein-coding	0.010000	0.547264	
mm_142853.1	chr17	51811951	51812151	-	1	NA	NA	NA	3	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.030000	0.507463	
mm_169818.1	chr16	21119136	21119336	-	1	NA	NA	NA	34708	NM_025634	66561	Mm.422867	NM_025634	ENSMUSG00000090356	Teddm3	2310042E22Rik	transmembrane epididymal family member 3	protein-coding	0.005000	0.462687	
mm_73246.1	chr8	104250866	104251066	+	1	NA	NA	NA	105	NM_001286383	75458	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	0.095000	0.656716	
mm_124146.1	chr14	88350328	88350528	-	1	NA	NA	NA	120968	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding	0.000000	0.333333	
mm_68552.1	chr7	114414949	114415149	-	1	NA	NA	NA	112	NR_029437	71045	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	0.140000	0.761194	
mm_50263.1	chr6	43598117	43598317	+	1	NA	NA	NA	68061	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.000000	0.398010	-66(GCTTTAAGGGAC,+,0.00),-43(CTTCTTAAAGTC,+,0.00)
mm_160600.1	chr9	76545622	76545822	-	1	NA	NA	NA	82	NM_001045518	208994	Mm.256929	NM_001045518	ENSMUSG00000032358	Fam83b	C530008M07Rik|Gm516	family with sequence similarity 83, member B	protein-coding	0.030000	0.452736	
mm_166005.1	chr4	116686077	116686277	+	1	NA	NA	NA	-155	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.035000	0.432836	
mm_132466.1	chr16	36633212	36633412	+	1	NA	NA	NA	32765	NM_019388	12524	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.005000	0.427861	
mm_70473.1	chr8	12385659	12385859	+	1	NA	NA	NA	-12	NR_027975	434280	Mm.447484	NM_001013812	ENSMUSG00000047935	Gm5607	EG434280	predicted gene 5607	ncRNA	0.080000	0.532338	
mm_144349.1	chr18	15195172	15195372	+	1	NA	NA	NA	-43826	NM_134112	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.015000	0.422886	
mm_23052.1	chr3	35721991	35722191	+	1	NA	NA	NA	-32047	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.000000	0.462687	
mm_74311.1	chr8	126594708	126594908	+	1	NA	NA	NA	-1372	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.095000	0.696517	
mm_68734.1	chr7	120880810	120881010	-	1	NA	NA	NA	29721	NM_001267711	13631	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.005000	0.537313	
mm_11408.1	chr2	31518624	31518824	+	1	NA	NA	NA	48416	NR_002687	432466	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.040000	0.557214	
mm_154798.1	chrX	13284081	13284281	+	1	NA	NA	NA	3159	NM_010028	13205	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	0.015000	0.383085	
mm_60014.1	chr7	30751435	30751635	+	1	NA	NA	NA	64	NM_001083903	282619	Mm.250717	NM_172205	ENSMUSG00000046056	Sbsn	1110005D19Rik|AI747508	suprabasin	protein-coding	0.020000	0.592040	
mm_142983.1	chr17	56276634	56276834	-	1	NA	NA	NA	33	NM_174989	106759	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.050000	0.661692	
mm_72133.1	chr8	71881990	71882190	+	1	NA	NA	NA	22	NM_145624	236193	Mm.290790	NM_145624	ENSMUSG00000056019	Zfp709	BC021921|GIOT-4|HIT-40	zinc finger protein 709	protein-coding	0.120000	0.696517	
mm_81444.1	chr9	109812125	109812325	+	1	NA	NA	NA	-4402	NM_183136	78709	Mm.99613	NM_183136	ENSMUSG00000050074	Spink8	C630041L24Rik	serine peptidase inhibitor, Kazal type 8	protein-coding	0.005000	0.507463	
mm_106301.1	chr11	118248499	118248699	-	1	NA	NA	NA	-7	NM_011180	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.140000	0.776119	
mm_110189.1	chr12	27340091	27340291	-	1	NA	NA	NA	2527	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.005000	0.288557	30(TGGTTTAAAAGG,-,0.00)
mm_55376.1	chr6	58780419	58780619	-	1	NA	NA	NA	-53181	NM_028705	73998	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0.005000	0.487562	
mm_69177.1	chr7	127218373	127218573	-	1	NA	NA	NA	-28	NM_017461	54204	Mm.18	NM_017461	ENSMUSG00000000486	Sept1	Diff6|Pnutl3	septin 1	protein-coding	0.015000	0.577114	
mm_11857.1	chr2	48627366	48627566	+	1	NA	NA	NA	-186643	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.000000	0.427861	
mm_24572.1	chr3	93444497	93444697	+	1	NA	NA	NA	2267	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.100000	0.706468	
mm_88390.1	chr10	76480972	76481172	+	1	NA	NA	NA	-11958	NM_172550	216119	Mm.344778	NM_172550	ENSMUSG00000033126	Ybey	1110068N23Rik|A130042E20Rik|C21orf57|ORF57|ORF66	ybeY metallopeptidase	protein-coding	0.040000	0.547264	
mm_109822.1	chr12	3862112	3862312	-	1	NA	NA	NA	32	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.000000	0.567164	
mm_163807.1	chr14	19416011	19416211	+	1	NA	NA	NA	186476	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.338308	
mm_138235.1	chr17	34399436	34399636	+	1	NA	NA	NA	716	NM_001163855	407788	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	0.015000	0.502488	-34(TCCTATATAAGC,-,0.00)
mm_70694.1	chr8	15027224	15027424	+	1	NA	NA	NA	16299	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.025000	0.572139	
mm_18686.1	chr2	71388964	71389164	-	1	NA	NA	NA	-196	NM_026115	107435	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0.080000	0.616915	
mm_157032.1	chrX	7947569	7947769	-	1	NA	NA	NA	220	NM_001130416	15185	Mm.29854	NM_010413	ENSMUSG00000031161	Hdac6	Hd6|Hdac5|Sfc6|mHDA2	histone deacetylase 6	protein-coding	0.075000	0.606965	-33(GTCTTTAAAGGT,-,0.00),-32(TCTTTAAAGGTG,+,0.00)
mm_62779.1	chr7	112426932	112427132	+	1	NA	NA	NA	-674	NM_020606	57342	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding	0.015000	0.502488	
mm_137734.1	chr17	29319093	29319293	+	1	NA	NA	NA	311	NM_023734	74116	Mm.30950	NM_023734	ENSMUSG00000024011	Pi16	1200009H11Rik|Cripi|PI-16	peptidase inhibitor 16	protein-coding	0.020000	0.661692	
mm_104440.1	chr11	94976236	94976436	-	1	NA	NA	NA	-9	NM_009161	20391	Mm.18709	NM_009161	ENSMUSG00000001508	Sgca	50DAG|Asg	sarcoglycan, alpha (dystrophin-associated glycoprotein)	protein-coding	0.010000	0.557214	
mm_121963.1	chr14	25460233	25460433	-	1	NA	NA	NA	1148	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.090000	0.671642	
mm_50798.1	chr6	54267066	54267266	+	1	NA	NA	NA	-1990	NM_001311134	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.005000	0.482587	-67(GCTCATAAAGCC,+,0.00)
mm_84158.1	chr9	59539854	59540054	-	1	NA	NA	NA	414	NM_010421	15211	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.110000	0.666667	
mm_118334.1	chr13	113880985	113881185	-	1	NA	NA	NA	86577	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.045000	0.547264	
mm_143001.1	chr17	56422620	56422820	-	1	NA	NA	NA	-3811	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0.030000	0.547264	
mm_34644.1	chr4	150710774	150710974	+	1	NA	NA	NA	-58700	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.035000	0.517413	
mm_159626.1	chr4	136423405	136423605	+	1	NA	NA	NA	-19	NM_001285482	15552	Mm.40573	NM_008309	ENSMUSG00000070687	Htr1d	5-HT-1D|5-HT1D|AI853647|Gpcr14|Htr1db	5-hydroxytryptamine (serotonin) receptor 1D	protein-coding	0.025000	0.582090	
mm_61393.1	chr7	73185671	73185871	+	1	NA	NA	NA	-83703	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	0.015000	0.467662	
mm_38544.1	chr4	141599787	141599987	-	1	NA	NA	NA	37	NM_001163256	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.125000	0.766169	-67(CCTTTTATGGTA,+,0.00)
mm_80780.1	chr9	95637554	95637754	+	1	NA	NA	NA	26	NM_029620	76477	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.105000	0.726368	
mm_14225.1	chr2	127365264	127365464	+	1	NA	NA	NA	2078	NM_009633	11552	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	0.000000	0.378109	
mm_171257.1	chr3	81712195	81712395	-	1	NA	NA	NA	-89730	NR_138586	320566	Mm.208417	NR_138586	ENSMUSG00000103695	A830029E22Rik	-	RIKEN cDNA A830029E22 gene	ncRNA	0.055000	0.626866	
mm_95380.1	chr11	49098689	49098889	+	1	NA	NA	NA	11772	NM_008330	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.010000	0.407960	
mm_59466.1	chr7	27258688	27258888	+	1	NA	NA	NA	27	NM_010950	18223	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0.130000	0.761194	
mm_22645.1	chr3	14866723	14866923	+	1	NA	NA	NA	3285	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.040000	0.527363	
mm_15228.1	chr2	154548811	154549011	+	1	NA	NA	NA	7	NM_029305	75480	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0.010000	0.582090	
mm_70813.1	chr8	23085483	23085683	+	1	NA	NA	NA	27324	NR_102385	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.000000	0.457711	-34(GTTTTTATGGCT,+,0.00)
mm_152876.1	chr19	24518254	24518454	-	1	NA	NA	NA	37473	NM_008846	18719	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	0.000000	0.432836	
mm_135269.1	chr16	38394215	38394415	-	1	NA	NA	NA	32125	NM_022318	64082	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.010000	0.512438	-36(CCTTTTAAAATC,+,0.00)
mm_103339.1	chr11	74699594	74699794	-	1	NA	NA	NA	24164	NR_037610	18472	Mm.397111	NM_013625	ENSMUSG00000020745	Pafah1b1	LIS-1|Lis1|MMS10-U|Mdsh|Ms10u|Pafaha	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	protein-coding	0.005000	0.308458	
mm_92800.1	chr10	81358823	81359023	-	1	NA	NA	NA	1353	NM_028657	73822	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1	major facilitator superfamily domain containing 12	protein-coding	0.005000	0.492537	
mm_168455.1	chr11	41380781	41380981	+	1	NA	NA	NA	619833	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding	0.040000	0.527363	
mm_135744.1	chr16	55895231	55895431	-	1	NA	NA	NA	-52	NM_001134457	385658	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0.145000	0.736318	
mm_2618.1	chr1	120491950	120492150	+	1	NA	NA	NA	13034	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.015000	0.562189	
mm_49709.1	chr6	34415321	34415521	+	1	NA	NA	NA	3059	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.025000	0.497512	
mm_11349.1	chr2	30845279	30845479	+	1	NA	NA	NA	12	NM_009116	20204	Mm.1802	NM_009116	ENSMUSG00000039476	Prrx2	Prx2|S8	paired related homeobox 2	protein-coding	0.130000	0.751244	
mm_115480.1	chr13	3170701	3170901	-	1	NA	NA	NA	21326	NR_001581	73266	Mm.335891	NR_001581		Speer6-ps1	1700039A02Rik|SPEER-6	spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1	pseudo	0.005000	0.507463	
mm_37105.1	chr4	116637419	116637619	-	1	NA	NA	NA	-9568	NM_016777	50927	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.010000	0.437811	
mm_89388.1	chr10	89785739	89785939	+	1	NA	NA	NA	40848	NM_029166	75089	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0.005000	0.412935	
mm_43025.1	chr5	123908999	123909199	+	1	NA	NA	NA	1824	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.020000	0.567164	
mm_32413.1	chr4	107036020	107036220	+	1	NA	NA	NA	30746	NM_025500	56280	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0.010000	0.537313	
mm_85983.1	chr9	112179220	112179420	-	1	NA	NA	NA	6629	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.015000	0.368159	
mm_80236.1	chr9	72685967	72686167	+	1	NA	NA	NA	23720	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.025000	0.393035	-41(GTGTTTTTAAAG,-,0.00),-39(GTTTTTAAAGAA,+,0.00)
mm_20302.1	chr2	127141123	127141323	-	1	NA	NA	NA	1367	NM_001163528	73338	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	0.040000	0.567164	
mm_3054.1	chr1	134061043	134061243	+	1	NA	NA	NA	18012	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.045000	0.611940	
mm_127818.1	chr15	5108352	5108552	-	1	NA	NA	NA	81	NM_001163138	239319	Mm.31252	NM_001163138	ENSMUSG00000041849	Card6	D730008L15	caspase recruitment domain family, member 6	protein-coding	0.020000	0.442786	
mm_81052.1	chr9	105658314	105658514	+	1	NA	NA	NA	15419	NM_001081309	75669	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 4, p150	protein-coding	0.045000	0.582090	
mm_59137.1	chr7	24112274	24112474	+	1	NA	NA	NA	54	NM_021307	57745	Mm.82678	NM_021307	ENSMUSG00000052675	Zfp112	Znf112|Znf228	zinc finger protein 112	protein-coding	0.030000	0.567164	
mm_152731.1	chr19	18936310	18936510	-	1	NA	NA	NA	64707	NM_146095	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.010000	0.452736	
mm_34835.1	chr4	155250095	155250295	+	1	NA	NA	NA	229	NR_033802	67513	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	0.115000	0.676617	
mm_79050.1	chr9	46229032	46229232	+	1	NA	NA	NA	502	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.025000	0.532338	
mm_73332.1	chr8	105300321	105300521	+	1	NA	NA	NA	2758	NM_148952	104394	Mm.34554	NM_148952	ENSMUSG00000014859	E2f4	2010111M04Rik|AI427446	E2F transcription factor 4	protein-coding	0.010000	0.547264	
mm_157619.1	chrX	56549501	56549701	-	1	NA	NA	NA	5	NM_001033372	270599	Mm.424438	NM_001033372	ENSMUSG00000064016	Gm648	-	predicted gene 648	protein-coding	0.025000	0.552239	
mm_106567.1	chr11	120643196	120643396	-	1	NA	NA	NA	374	NM_144795	209027	Mm.127731	NM_144795	ENSMUSG00000025140	Pycr1	-	pyrroline-5-carboxylate reductase 1	protein-coding	0.050000	0.592040	
mm_6329.1	chr1	71619387	71619587	-	1	NA	NA	NA	33747	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.030000	0.537313	
mm_100272.1	chr11	117762118	117762318	+	1	NA	NA	NA	18403	NM_181321	217353	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.025000	0.363184	
mm_125710.1	chr15	68403654	68403854	+	1	NA	NA	NA	-62465	NR_029718	387228		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0.015000	0.462687	-34(GGGTATAAATAG,-,0.00)
mm_161611.1	chr16	45736683	45736883	-	1	NA	NA	NA	6172	NM_001272070	213012	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	0.010000	0.417910	
mm_125996.1	chr15	76380417	76380617	+	1	NA	NA	NA	4	NM_175457	223658	Mm.123240	NM_175457	ENSMUSG00000022558	Mroh1	D330001F17Rik|Heatr7a	maestro heat-like repeat family member 1	protein-coding	0.100000	0.701493	66(GGCTTGTTAAGG,-,0.00)
mm_167695.1	chr9	88273991	88274191	-	1	NA	NA	NA	-53518	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	0.000000	0.422886	-33(GAGCATAAAAAC,-,0.00)
mm_117168.1	chr13	62867275	62867475	-	1	NA	NA	NA	-9005	NM_007994	14120	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	0.020000	0.497512	-3(CTTTTTATACCC,+,0.00)
mm_150633.1	chr19	41482560	41482760	+	1	NA	NA	NA	-42592	NM_001326287	627352	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0.165000	0.781095	
mm_117912.1	chr13	99430944	99431144	-	1	NA	NA	NA	-18218	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.020000	0.522388	
mm_33865.1	chr4	135932253	135932453	+	1	NA	NA	NA	11627	NM_024243	71665	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	0.015000	0.522388	
mm_26400.1	chr3	142603499	142603699	+	1	NA	NA	NA	8752	NM_010259	14468	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.000000	0.407960	
mm_9493.1	chr1	173729476	173729676	-	1	NA	NA	NA	12233	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.010000	0.487562	
mm_153780.1	chr19	45783406	45783606	-	1	NA	NA	NA	-215	NM_023799	76055	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	2810009A20Rik|4833427O07Rik|5830447M11Rik|AA408215|Hy5|Ncoat|OGA|mKIAA0679	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0.110000	0.721393	
mm_151776.1	chr19	5307418	5307618	-	1	NA	NA	NA	9187	NM_001024717	545276	Mm.447174	NM_001024717	ENSMUSG00000047658	Gal3st3	-	galactose-3-O-sulfotransferase 3	protein-coding	0.195000	0.746269	
mm_128843.1	chr15	70791282	70791482	-	1	NA	NA	NA	867149	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA	0.000000	0.398010	
mm_126562.1	chr15	82169870	82170070	+	1	NA	NA	NA	22701	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.025000	0.631841	
mm_24332.1	chr3	89520064	89520264	+	1	NA	NA	NA	0	NM_080466	140493	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	0.030000	0.532338	
mm_147982.1	chr18	67555212	67555412	-	1	NA	NA	NA	-2591	NM_194355	68166	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire homolog 1 (Drosophila)	protein-coding	0.000000	0.417910	
mm_63232.1	chr7	126470291	126470491	+	1	NA	NA	NA	2703	NR_110346	20399	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	0.020000	0.457711	
mm_21773.1	chr2	164846523	164846723	-	1	NA	NA	NA	11085	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.020000	0.562189	
mm_119709.1	chr14	53845170	53845370	+	1	NA	NA	NA	408659	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.437811	
mm_14184.1	chr2	127080102	127080302	+	1	NA	NA	NA	9545	NM_026678	109778	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0.015000	0.412935	
mm_83962.1	chr9	57148129	57148329	-	1	NA	NA	NA	-1195	NM_028347	72774	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0.045000	0.532338	
mm_37412.1	chr4	122859407	122859607	-	1	NA	NA	NA	23280	NM_008917	19063	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.005000	0.522388	
mm_113146.1	chr13	24722487	24722687	+	1	NA	NA	NA	39350	NM_020567	57441	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.010000	0.263682	
mm_92906.1	chr10	83533295	83533495	-	1	NA	NA	NA	745	NM_153543	216188	Mm.263138	NM_153543	ENSMUSG00000020256	Aldh1l2	D330038I09Rik|mtFDH	aldehyde dehydrogenase 1 family, member L2	protein-coding	0.045000	0.562189	
mm_153967.1	chr19	47855210	47855410	-	1	NA	NA	NA	337	NM_010362	14873	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0.090000	0.666667	
mm_26610.1	chr3	152253525	152253725	+	1	NA	NA	NA	12695	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.020000	0.373134	
mm_112694.1	chr13	17694935	17695135	+	1	NA	NA	NA	-270	NM_138654	192136	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	0.080000	0.656716	
mm_25159.1	chr3	103043535	103043735	+	1	NA	NA	NA	-14650	NM_010937	18176	Mm.400954	NM_010937	ENSMUSG00000027852	Nras	AV095280|N-ras	neuroblastoma ras oncogene	protein-coding	0.015000	0.373134	85(CCCTTTTTAAAG,-,0.00),87(CTTTTTAAAGAT,+,0.00)
mm_108331.1	chr12	79969530	79969730	+	1	NA	NA	NA	-33366	NR_131074	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.010000	0.562189	
mm_7049.1	chr1	87127289	87127489	-	1	NA	NA	NA	2381	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.045000	0.606965	
mm_121043.1	chr14	80022070	80022270	+	1	NA	NA	NA	21868	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding	0.005000	0.353234	
mm_41456.1	chr5	90905735	90905935	+	1	NA	NA	NA	1936	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.015000	0.333333	
mm_10358.1	chr2	11690885	11691085	+	1	NA	NA	NA	-14308	NM_001271498	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.015000	0.437811	
mm_87785.1	chr10	60296820	60297020	+	1	NA	NA	NA	12459	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.000000	0.318408	-5(TTTTATAAAAGG,-,0.00)
mm_6322.1	chr1	71606733	71606933	-	1	NA	NA	NA	46401	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.020000	0.492537	
mm_85157.1	chr9	96333168	96333368	-	1	NA	NA	NA	31031	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.020000	0.502488	
mm_45137.1	chr5	48934087	48934287	-	1	NA	NA	NA	-44630	NM_030265	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.005000	0.303483	
mm_163226.1	chr11	102365076	102365276	-	1	NA	NA	NA	105	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.030000	0.671642	
mm_130749.1	chr15	101266425	101266625	-	1	NA	NA	NA	-321	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.075000	0.582090	
mm_141545.1	chr17	32021844	32022044	-	1	NA	NA	NA	12564	NM_028902	74377	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	0.005000	0.412935	
mm_135845.1	chr16	58718676	58718876	-	1	NA	NA	NA	-52	NM_001162955	71223	Mm.359970	NM_001162955	ENSMUSG00000047293	Gpr15	4933439K08Rik	G protein-coupled receptor 15	protein-coding	0.030000	0.467662	
mm_138599.1	chr17	35552075	35552275	+	1	NA	NA	NA	47	NM_001008424	386463	Mm.426664	NM_001008424	ENSMUSG00000039518	Cdsn	AI747712	corneodesmosin	protein-coding	0.035000	0.646766	
mm_100371.1	chr11	119089287	119089487	+	1	NA	NA	NA	-3150	NM_007625	12418	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.045000	0.611940	-87(ACCTTTATAAGA,-,0.00)
mm_162909.1	chr10	118101866	118102066	+	1	NA	NA	NA	-39821	NM_001162904	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.010000	0.497512	
mm_155235.1	chrX	57211950	57212150	+	1	NA	NA	NA	-93	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.030000	0.437811	
mm_126587.1	chr15	82341106	82341306	+	1	NA	NA	NA	27	NM_177391	338368	Mm.444916	NM_177391	ENSMUSG00000049687	Fam109b	C920005C14Rik|IPIP27B|Ses2	family with sequence similarity 109, member B	protein-coding	0.120000	0.766169	
mm_158238.1	chrX	106603371	106603571	-	1	NA	NA	NA	208	NM_001281862	58861	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	0.020000	0.512438	
mm_70464.1	chr8	11912918	11913118	+	1	NA	NA	NA	72497	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	0.045000	0.507463	
mm_29620.1	chr3	121343264	121343464	-	1	NA	NA	NA	51547	NM_024178	66789	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0.025000	0.467662	
mm_96690.1	chr11	69591318	69591518	+	1	NA	NA	NA	11059	NM_001127233	22059	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.015000	0.537313	-34(CGCCATAAAAAA,-,0.00)
mm_110308.1	chr12	33092793	33092993	-	1	NA	NA	NA	-18	NM_001024478	68764	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	0.010000	0.462687	
mm_143920.1	chr17	85618290	85618490	-	1	NA	NA	NA	6	NR_038084	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.060000	0.656716	
mm_156551.1	chrX	151593864	151594064	+	1	NA	NA	NA	73292	NM_001113354	320595	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	0.000000	0.328358	
mm_105956.1	chr11	115367611	115367811	-	1	NA	NA	NA	8	NM_175454	217310	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	0.110000	0.741294	
mm_66942.1	chr7	61943532	61943732	-	1	NA	NA	NA	-3526	NR_030557	100124439		NR_030557	ENSMUSG00000093187	Mir344-2	Mirn344-2|mir-344-2	microRNA 344-2	ncRNA	0.000000	0.368159	
mm_33010.1	chr4	120825244	120825444	+	1	NA	NA	NA	397	NM_001277095	18046	Mm.435590	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0.160000	0.756219	
mm_98799.1	chr11	97029861	97030061	+	1	NA	NA	NA	9	NM_146027	217140	Mm.46189	NM_146027	ENSMUSG00000020877	Scrn2	AV001119|D11Moh48|SES2	secernin 2	protein-coding	0.055000	0.646766	
mm_156067.1	chrX	109160962	109161162	+	1	NA	NA	NA	-35694	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.010000	0.358209	
mm_83300.1	chr9	43240284	43240484	-	1	NA	NA	NA	-568	NM_178644	102644	Mm.246479	NM_178644	ENSMUSG00000032014	Oaf	AL024221|D130038B21Rik|D9Ucla1	out at first homolog	protein-coding	0.030000	0.522388	
mm_116662.1	chr13	49200429	49200629	-	1	NA	NA	NA	12982	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.010000	0.497512	
mm_169692.1	chr15	74955579	74955779	+	1	NA	NA	NA	573	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.075000	0.651741	
mm_119733.1	chr14	54113341	54113541	+	1	NA	NA	NA	140488	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.452736	
mm_159232.1	chr2	136890876	136891076	+	1	NA	NA	NA	-242	NM_028201	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.055000	0.651741	
mm_3777.1	chr1	156558757	156558957	+	1	NA	NA	NA	70	NM_001136104	11352	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0.110000	0.731343	
mm_143495.1	chr17	71475266	71475466	-	1	NA	NA	NA	-23	NM_028887	74355	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0.145000	0.711443	
mm_166480.1	chr5	145104554	145104754	+	1	NA	NA	NA	-9602	NM_023142	11867	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.030000	0.562189	
mm_77806.1	chr9	3035984	3036184	+	1	NA	NA	NA	2659	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.343284	
mm_74785.1	chr8	22060223	22060423	-	1	NA	NA	NA	-249	NM_007511	11979	Mm.87854	NM_007511	ENSMUSG00000006567	Atp7b	Atp7a|WND|tx	ATPase, Cu++ transporting, beta polypeptide	protein-coding	0.100000	0.706468	
mm_22131.1	chr2	170427745	170427945	-	1	NA	NA	NA	0	NM_001164369	76960	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	0.025000	0.592040	
mm_127969.1	chr15	12010777	12010977	-	1	NA	NA	NA	-14870	NM_011294	20024	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.025000	0.477612	
mm_102687.1	chr11	65365700	65365900	-	1	NA	NA	NA	-77967	NR_040280	327946	Mm.383301	NR_040280	ENSMUSG00000085162	Gm12295	A730013G04|OTTMUSG00000005904	predicted gene 12295	ncRNA	0.040000	0.477612	
mm_96324.1	chr11	64079519	64079719	+	1	NA	NA	NA	135	NR_033780	66456	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA	0.080000	0.616915	-88(GAGCTTATAAAG,-,0.00),-86(GCTTATAAAGAT,+,0.00)
mm_38345.1	chr4	137769852	137770052	-	1	NA	NA	NA	-3477	NM_001287172	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.020000	0.592040	
mm_165030.1	chr19	33965550	33965750	+	1	NA	NA	NA	4402	NM_026334	67717	Mm.329816	NM_026334	ENSMUSG00000024768	Lipf	2310051B21Rik|AV082900	lipase, gastric	protein-coding	0.010000	0.437811	
mm_133396.1	chr16	84774334	84774534	+	1	NA	NA	NA	311	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.065000	0.686567	
mm_14047.1	chr2	122301041	122301241	+	1	NA	NA	NA	2241	NM_025777	66811	Mm.171333	NM_025777	ENSMUSG00000027225	Duoxa2	9030623N16Rik|Nip2	dual oxidase maturation factor 2	protein-coding	0.045000	0.542289	
mm_162593.1	chr1	181285605	181285805	+	1	NA	NA	NA	-66923	NM_028408	72978	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	0.020000	0.487562	
mm_54258.1	chr6	28304734	28304934	-	1	NA	NA	NA	-43233	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.005000	0.527363	
mm_111168.1	chr12	83597118	83597318	-	1	NA	NA	NA	-71	NM_183154	217695	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0.055000	0.606965	
mm_112474.1	chr13	5868505	5868705	+	1	NA	NA	NA	7116	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.010000	0.407960	
mm_50925.1	chr6	57609714	57609914	+	1	NA	NA	NA	28822	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.010000	0.422886	
mm_148475.1	chr19	4099942	4100142	+	1	NA	NA	NA	44	NR_075078	18739	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0.100000	0.766169	
mm_89647.1	chr10	97393384	97393584	+	1	NA	NA	NA	-29994	NR_039547	100628616		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	0.000000	0.417910	
mm_59665.1	chr7	28372851	28373051	+	1	NA	NA	NA	-289	NM_001083912	101497	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.080000	0.527363	
mm_1619.1	chr1	74391650	74391850	+	1	NA	NA	NA	141	NM_153088	227292	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.090000	0.711443	
mm_15836.1	chr2	164687240	164687440	+	1	NA	NA	NA	2233	NM_001012704	408190	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	0.020000	0.442786	0(CCTTTAATACGA,+,0.00)
mm_13754.1	chr2	118126571	118126771	+	1	NA	NA	NA	14795	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.015000	0.313433	-49(GTGTCTAAAAAG,-,0.00)
mm_30575.1	chr4	3938818	3939018	+	1	NA	NA	NA	30	NM_001285804	66433	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	0.080000	0.691542	
mm_97399.1	chr11	77838023	77838223	+	1	NA	NA	NA	36825	NM_001291215	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.010000	0.582090	
mm_17180.1	chr2	25365070	25365270	-	1	NA	NA	NA	456	NM_001033293	227620	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	0.045000	0.557214	
mm_89738.1	chr10	99023318	99023518	+	1	NA	NA	NA	-83753	NM_027740	382406	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.030000	0.522388	
mm_116734.1	chr13	51734621	51734821	-	1	NA	NA	NA	59026	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.020000	0.557214	
mm_171728.1	chr4	89711508	89711708	+	1	NA	NA	NA	23410	NM_175647	242523	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	0.010000	0.542289	-18(CCTTTTATAAGT,+,0.00)
mm_168172.1	chr10	55574735	55574935	+	1	NA	NA	NA	-532082	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding	0.040000	0.452736	
mm_102183.1	chr11	54069135	54069335	-	1	NA	NA	NA	-218	NM_019417	30794	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0.050000	0.611940	
mm_122154.1	chr14	31323840	31324040	-	1	NA	NA	NA	-44	NM_001033668	110084	Mm.101811	NM_001033668	ENSMUSG00000019027	Dnah1	B230373P09Rik|Dnahc1|E030034C22Rik|MDHC7	dynein, axonemal, heavy chain 1	protein-coding	0.060000	0.616915	
mm_84923.1	chr9	80465337	80465537	-	1	NA	NA	NA	1	NM_022016	63859	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	0.025000	0.472637	
mm_54772.1	chr6	41532724	41532924	-	1	NA	NA	NA	11048	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.015000	0.477612	-82(TGTCATATAAGG,-,0.00),55(CCTTTTCAAGGG,+,0.00)
mm_21660.1	chr2	164424186	164424386	-	1	NA	NA	NA	18902	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.000000	0.412935	
mm_4809.1	chr1	185356534	185356734	+	1	NA	NA	NA	-6461	NM_029735	107508	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	0.025000	0.452736	
mm_69834.1	chr7	141276660	141276860	-	1	NA	NA	NA	26	NM_028069	72040	Mm.29080	NM_028069	ENSMUSG00000025497	Cdhr5	1810074H01Rik|AI481143|Mucdhl|Mupcdh	cadherin-related family member 5	protein-coding	0.025000	0.601990	
mm_55325.1	chr6	55679231	55679431	-	1	NA	NA	NA	1932	NM_009717	11922	Mm.5106	NM_009717	ENSMUSG00000037984	Neurod6	Atoh2|Math-2|Math2|Nex|Nex1m|bHLHa2	neurogenic differentiation 6	protein-coding	0.040000	0.482587	
mm_69153.1	chr7	127144243	127144443	-	1	NA	NA	NA	-6520	NM_001037810	20737	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	0.000000	0.537313	
mm_54657.1	chr6	39088913	39089113	-	1	NA	NA	NA	-21427	NR_040523	69986	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.020000	0.502488	
mm_44601.1	chr5	25100483	25100683	-	1	NA	NA	NA	59	NM_145401	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.040000	0.562189	
mm_102000.1	chr11	51262926	51263126	-	1	NA	NA	NA	-75	NM_177567	193286	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0.100000	0.656716	
mm_18846.1	chr2	75633451	75633651	-	1	NA	NA	NA	-25708	NM_146130	229279	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.025000	0.547264	
mm_2822.1	chr1	131138311	131138511	+	1	NA	NA	NA	-177	NM_145508	226419	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.075000	0.616915	
mm_8089.1	chr1	135685255	135685455	-	1	NA	NA	NA	-43842	NM_007791	13007	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.005000	0.507463	
mm_63469.1	chr7	127588620	127588820	+	1	NA	NA	NA	22	NM_172281	233900	Mm.41122	NM_172281	ENSMUSG00000030816	Rnf40	AI848422|mKIAA0661	ring finger protein 40	protein-coding	0.085000	0.572139	
mm_58431.1	chr7	3297455	3297655	+	1	NA	NA	NA	4527	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.045000	0.517413	
mm_78706.1	chr9	41376376	41376576	+	1	NA	NA	NA	-50	NR_040725	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.045000	0.572139	
mm_40339.1	chr5	44226643	44226843	+	1	NA	NA	NA	-137	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.200000	0.845771	
mm_3714.1	chr1	153909105	153909305	+	1	NA	NA	NA	9276	NM_008131	14645	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.010000	0.383085	44(TTTTTTAAAAGC,-,0.00)
mm_119860.1	chr14	54467506	54467706	+	1	NA	NA	NA	3459	NM_022993	65107	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	0.000000	0.587065	
mm_63019.1	chr7	121034319	121034519	+	1	NA	NA	NA	-26	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.065000	0.646766	
mm_43570.1	chr5	137641206	137641406	+	1	NA	NA	NA	-167	NM_001081962	751865	Mm.200763	NM_001081962	ENSMUSG00000079165	Sap25	-	sin3 associated polypeptide	protein-coding	0.080000	0.656716	
mm_159609.1	chr4	131957613	131957813	-	1	NA	NA	NA	35942	NM_001201367	623230	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.045000	0.512438	
mm_27039.1	chr3	26331778	26331978	-	1	NA	NA	NA	31	NM_138666	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.085000	0.671642	
mm_14086.1	chr2	125136659	125136859	+	1	NA	NA	NA	67	NM_001162934	381418	Mm.295608	NM_001162934	ENSMUSG00000074872	Ctxn2	BB181834|Gm1638	cortexin 2	protein-coding	0.015000	0.537313	
mm_111093.1	chr12	80441403	80441603	-	1	NA	NA	NA	-4902	NM_177267	320808	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	0.035000	0.452736	
mm_170510.1	chr19	28155573	28155773	-	1	NA	NA	NA	-144507	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.065000	0.656716	
mm_107646.1	chr12	52505043	52505243	+	1	NA	NA	NA	-10934	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0.035000	0.517413	
mm_132216.1	chr16	32630016	32630216	+	1	NA	NA	NA	-14527	NM_001110147	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.020000	0.432836	
mm_35158.1	chr4	12171897	12172097	-	1	NA	NA	NA	18	NM_001310743	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.020000	0.572139	
mm_126894.1	chr15	89499526	89499726	+	1	NA	NA	NA	-231	NM_021423	58234	Mm.146855	NM_021423	ENSMUSG00000022623	Shank3	AI841104|SHANK3c-3|SHANK3c-4|Shank3b	SH3/ankyrin domain gene 3	protein-coding	0.160000	0.855721	
mm_72897.1	chr8	90861856	90862056	+	1	NA	NA	NA	33121	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.005000	0.487562	
mm_74412.1	chr8	3624824	3625024	-	1	NA	NA	NA	125	NM_001129804	18545	Mm.440882	NM_008790	ENSMUSG00000004630	Pcp2	L7|Pcp-2	Purkinje cell protein 2 (L7)	protein-coding	0.040000	0.582090	
mm_66877.1	chr7	57509889	57510089	-	1	NA	NA	NA	20	NM_176942	110886	Mm.273114	NM_176942	ENSMUSG00000055078	Gabra5	A230018I05Rik	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5	protein-coding	0.120000	0.701493	
mm_78603.1	chr9	37528010	37528210	+	1	NA	NA	NA	21	NM_027102	69524	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	0.050000	0.636816	
mm_67739.1	chr7	90265286	90265486	-	1	NA	NA	NA	46	NM_029256	75338	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.045000	0.547264	
mm_92562.1	chr10	79854201	79854401	-	1	NA	NA	NA	-131	NM_001077363	19205	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0.065000	0.557214	
mm_157367.1	chrX	37210904	37211104	-	1	NA	NA	NA	37	NM_001033234	194854	Mm.296429	NM_001033234	ENSMUSG00000073243	Gm9	-	predicted gene 9	protein-coding	0.050000	0.532338	
mm_111352.1	chr12	86950452	86950652	-	1	NA	NA	NA	3209	NM_001289432	217732	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.020000	0.457711	63(TCGTTTAAAAAG,-,0.00)
mm_57478.1	chr6	125236829	125237029	-	1	NA	NA	NA	98	NM_001033126	21940	Mm.367714	NM_001033126	ENSMUSG00000030336	Cd27	S152|Tnfrsf7|Tp55	CD27 antigen	protein-coding	0.015000	0.582090	
mm_14033.1	chr2	122152837	122153037	+	1	NA	NA	NA	5250	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.000000	0.363184	
mm_138833.1	chr17	39848158	39848358	+	1	NA	NA	NA	5261	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.105000	0.661692	
mm_136563.1	chr17	3210408	3210608	+	1	NA	NA	NA	95536	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.005000	0.388060	
mm_141503.1	chr17	31636416	31636616	-	1	NA	NA	NA	689	NM_144855	12411	Mm.206417	NM_144855	ENSMUSG00000024039	Cbs	AI047524|AI303044|HIP4	cystathionine beta-synthase	protein-coding	0.070000	0.646766	
mm_48008.1	chr5	136161965	136162165	-	1	NA	NA	NA	8591	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.025000	0.547264	
mm_92645.1	chr10	80387508	80387708	-	1	NA	NA	NA	43	NM_198615	237400	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0.190000	0.875622	
mm_74458.1	chr8	4214519	4214719	-	1	NA	NA	NA	2693	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.015000	0.572139	
mm_166531.1	chr6	29853865	29854065	+	1	NA	NA	NA	224	NM_001347084	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.010000	0.507463	
mm_34094.1	chr4	138834971	138835171	+	1	NA	NA	NA	3195	NM_001082531	18780	Mm.4675	NM_011108	ENSMUSG00000058908	Pla2g2a	EF|Mom1|Pla2|sPLA2|sPla2-IIA	phospholipase A2, group IIA (platelets, synovial fluid)	protein-coding	0.005000	0.537313	
mm_92756.1	chr10	81037177	81037377	-	1	NA	NA	NA	-3365	NM_134135	106947	Mm.5353	NM_134135	ENSMUSG00000046822	Slc39a3	AI845814|Zip3	solute carrier family 39 (zinc transporter), member 3	protein-coding	0.075000	0.676617	
mm_161681.1	chr17	17579040	17579240	-	1	NA	NA	NA	45349	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.025000	0.532338	
mm_119390.1	chr14	41137347	41137547	+	1	NA	NA	NA	5659	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.000000	0.427861	
mm_79969.1	chr9	66447958	66448158	+	1	NA	NA	NA	66535	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.030000	0.447761	-58(TCTTTTATATAG,+,0.00)
mm_83006.1	chr9	36756929	36757129	-	1	NA	NA	NA	10549	NM_008408	16430	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	0.000000	0.273632	84(TCTTTTAGACAG,+,0.00)
mm_81677.1	chr9	111057265	111057465	+	1	NA	NA	NA	-95	NM_017466	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.025000	0.502488	
mm_77109.1	chr8	111081638	111081838	-	1	NA	NA	NA	-30	NM_181549	353287	Mm.135495	NM_181549	ENSMUSG00000033633	Clec18a	Mrcl	C-type lectin domain family 18, member A	protein-coding	0.015000	0.522388	
mm_124407.1	chr14	115477493	115477693	-	1	NA	NA	NA	-68041	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0.035000	0.562189	
mm_61769.1	chr7	82867375	82867575	+	1	NA	NA	NA	142	NM_175366	108797	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0.110000	0.741294	
mm_87917.1	chr10	62494696	62494896	+	1	NA	NA	NA	-7991	NM_133672	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.020000	0.383085	
mm_171520.1	chr4	146565139	146565339	-	1	NA	NA	NA	-18366	NR_045468	67524	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	0.035000	0.442786	
mm_25493.1	chr3	109340609	109340809	+	1	NA	NA	NA	26	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.140000	0.805970	
mm_165895.1	chr4	45741851	45742051	+	1	NA	NA	NA	22272	NR_046068	100040567	Mm.490816	NR_046068	ENSMUSG00000085876	Gm12409	OTTMUSG00000006726	predicted gene 12409	ncRNA	0.005000	0.537313	
mm_57569.1	chr6	127129204	127129404	-	1	NA	NA	NA	-19752	NM_177003	319801	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	0.010000	0.447761	
mm_71271.1	chr8	40919404	40919604	+	1	NA	NA	NA	-6729	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.020000	0.467662	
mm_11405.1	chr2	31510960	31511160	+	1	NA	NA	NA	40752	NR_002687	432466	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.000000	0.472637	
mm_147938.1	chr18	66059410	66059610	-	1	NA	NA	NA	-56875	NM_001172062	70361	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	0.005000	0.517413	
mm_166698.1	chr6	114315570	114315770	+	1	NA	NA	NA	33035	NM_178703	232333	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.020000	0.537313	-9(CTTTTTATGCTG,+,0.00)
mm_145480.1	chr18	60379087	60379287	+	1	NA	NA	NA	3158	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.407960	
mm_59105.1	chr7	19749861	19750061	+	1	NA	NA	NA	-388	NM_001159724	19294	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.025000	0.567164	
mm_78555.1	chr9	35424871	35425071	+	1	NA	NA	NA	-27105	NM_021339	57810	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	0.015000	0.467662	
mm_116180.1	chr13	30897350	30897550	-	1	NA	NA	NA	50311	NM_153072	210554	Mm.450571	NM_153072	ENSMUSG00000076430	Hus1b	-	HUS1 checkpoint clamp component B	protein-coding	0.000000	0.228856	72(TTCTTTAAAAGG,-,0.00),73(TCTTTAAAAGGT,+,0.00),74(CTTTAAAAGGTC,+,0.00)
mm_118208.1	chr13	109903607	109903807	-	1	NA	NA	NA	-102	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.030000	0.562189	
mm_133969.1	chr16	4320558	4320758	-	1	NA	NA	NA	91429	NR_003628	436332	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	0.040000	0.462687	
mm_149385.1	chr19	11382467	11382667	+	1	NA	NA	NA	7079	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.000000	0.378109	
mm_52283.1	chr6	108660761	108660961	+	1	NA	NA	NA	73	NR_104577	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.040000	0.601990	
mm_55753.1	chr6	78378743	78378943	-	1	NA	NA	NA	22	NM_001161741	30053	Mm.33691	NM_013893	ENSMUSG00000068341	Reg3d	INGAP|Ingaprp	regenerating islet-derived 3 delta	protein-coding	0.005000	0.472637	-33(TCGTTTTAAAAG,-,0.00),-31(GTTTTAAAAGTG,+,0.00)
mm_119235.1	chr14	33337339	33337539	+	1	NA	NA	NA	73585	NM_001310452	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.020000	0.542289	
mm_150049.1	chr19	29380403	29380603	+	1	NA	NA	NA	13065	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.030000	0.527363	
mm_35706.1	chr4	44167898	44168098	-	1	NA	NA	NA	285	NM_001038993	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.155000	0.761194	
mm_173324.1	chrY	90737409	90737609	+	1	NA	NA	NA	17541	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.000000	0.457711	
mm_5037.1	chr1	193332182	193332382	+	1	NA	NA	NA	30039	NM_001277928	16780	Mm.435441	NM_008484	ENSMUSG00000026639	Lamb3	-	laminin, beta 3	protein-coding	0.045000	0.616915	
mm_101261.1	chr11	21046206	21046406	-	1	NA	NA	NA	-45018	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.010000	0.467662	
mm_112825.1	chr13	20805075	20805275	+	1	NA	NA	NA	11062	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.422886	
mm_160254.1	chr7	107814733	107814933	+	1	NA	NA	NA	247	NM_001005488	257919	Mm.377303	NM_001005488	ENSMUSG00000066242	Olfr467	GA_x5J8B7W6B6J-2556603-2556836|MOR204-33P	olfactory receptor 467	protein-coding	0.000000	0.527363	
mm_103541.1	chr11	77513175	77513375	-	1	NA	NA	NA	-2	NM_001024920	216964	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	0.130000	0.731343	
mm_132003.1	chr16	25684073	25684273	+	1	NA	NA	NA	408	NM_001127260	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.010000	0.422886	
mm_31811.1	chr4	66827541	66827741	+	1	NA	NA	NA	90	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.025000	0.497512	
mm_77763.1	chr9	3002245	3002445	+	1	NA	NA	NA	36398	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.015000	0.338308	
mm_98421.1	chr11	94644049	94644249	+	1	NA	NA	NA	9605	NM_177752	268465	Mm.358937	NM_177752	ENSMUSG00000039055	Eme1	6820428D13	essential meiotic structure-specific endonuclease 1	protein-coding	0.010000	0.487562	
mm_49867.1	chr6	38556957	38557157	+	1	NA	NA	NA	1334	NM_001331223	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.000000	0.278607	2(AGCCTTAAATGC,-,0.00),71(GTACATATAAGG,-,0.00)
mm_149549.1	chr19	12599834	12600034	+	1	NA	NA	NA	-50	NM_001167907	240549	Mm.302458	NM_001013762	ENSMUSG00000071633	Gm4952	EG240549	predicted gene 4952	protein-coding	0.005000	0.457711	
mm_38794.1	chr4	148148801	148149001	-	1	NA	NA	NA	-1905	NR_105989	102465619		NR_105989	ENSMUSG00000099043	Mir7022	Gm27291|mmu-mir-7022	microRNA 7022	ncRNA	0.000000	0.542289	
mm_44748.1	chr5	31241129	31241329	-	1	NA	NA	NA	311	NM_147201	192292	Mm.292040	NM_147201	ENSMUSG00000029148	Nrbp1	B230344L17Rik|Nrbp	nuclear receptor binding protein 1	protein-coding	0.145000	0.820896	
mm_103314.1	chr11	73138108	73138308	-	1	NA	NA	NA	86	NM_010353	14841	Mm.42045	NM_010353	ENSMUSG00000050107	Gsg2	Haspin	germ cell associated 2, haspin	protein-coding	0.135000	0.691542	
mm_45160.1	chr5	49524893	49525093	-	1	NA	NA	NA	-239334	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.075000	0.701493	
mm_47067.1	chr5	116422766	116422966	-	1	NA	NA	NA	-2	NM_030704	80888	Mm.21549	NM_030704	ENSMUSG00000041548	Hspb8	AU018630|AW413033|Cryac|D5Ucla4|E2IG1|H11|H11K|HSP20-like|HSP22	heat shock protein 8	protein-coding	0.030000	0.577114	
mm_88946.1	chr10	81328629	81328829	+	1	NA	NA	NA	26	NM_001277265	21390	Mm.4545	NM_009325	ENSMUSG00000034881	Tbxa2r	TP|TXA2-R	thromboxane A2 receptor	protein-coding	0.055000	0.676617	
mm_14201.1	chr2	127208991	127209191	+	1	NA	NA	NA	687	NM_177214	320632	Mm.215860	NM_177214	ENSMUSG00000003660	Snrnp200	A330064G03Rik|Ascc3l1|BC011390|HELIC2|U5-200-KD|U5-200KD	small nuclear ribonucleoprotein 200 (U5)	protein-coding	0.045000	0.537313	
mm_40093.1	chr5	34549513	34549713	+	1	NA	NA	NA	37	NM_001145859	24055	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.085000	0.711443	
mm_45065.1	chr5	43749398	43749598	-	1	NA	NA	NA	32651	NM_001159963	242960	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0.005000	0.348259	
mm_162953.1	chr11	4160326	4160526	+	1	NA	NA	NA	72	NM_026175	67465	Mm.156914	NM_026175	ENSMUSG00000002129	Sf3a1	1200014H24Rik|5930416L09Rik|AI159724	splicing factor 3a, subunit 1	protein-coding	0.115000	0.646766	
mm_32994.1	chr4	120449904	120450104	+	1	NA	NA	NA	44723	NM_013883	29871	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	0.000000	0.432836	
mm_136681.1	chr17	6730142	6730342	+	1	NA	NA	NA	24412	NM_183368	83672	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0.005000	0.457711	
mm_1940.1	chr1	86233929	86234129	+	1	NA	NA	NA	-69192	NM_145222	227327	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.005000	0.537313	
mm_2749.1	chr1	128705381	128705581	+	1	NA	NA	NA	-113182	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.000000	0.487562	
mm_14630.1	chr2	136781190	136781390	+	1	NA	NA	NA	67840	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.000000	0.452736	
mm_9901.1	chr1	186749222	186749422	-	1	NA	NA	NA	36	NM_026041	67223	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	0.070000	0.557214	
mm_100582.1	chr11	120784434	120784634	+	1	NA	NA	NA	19	NM_145370	209318	Mm.30195	NM_145370	ENSMUSG00000025156	Gps1	Cops1|Csn1|R75577|Sgn1	G protein pathway suppressor 1	protein-coding	0.165000	0.815920	
mm_158278.1	chrX	111463399	111463599	-	1	NA	NA	NA	74460	NM_025949	67071	Mm.37617	NM_025949	ENSMUSG00000025665	Rps6ka6	2610524K04Rik|RSK4|S6K-alpha-6	ribosomal protein S6 kinase polypeptide 6	protein-coding	0.090000	0.681592	
mm_111021.1	chr12	79068351	79068551	-	1	NA	NA	NA	21219	NM_029988	110417	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	0.050000	0.606965	
mm_63992.1	chr7	140097005	140097205	+	1	NA	NA	NA	3709	NM_009475	22264	Mm.439707	NM_009475	ENSMUSG00000025467	Prap1	Upa	proline-rich acidic protein 1	protein-coding	0.015000	0.512438	
mm_4686.1	chr1	180598165	180598365	+	1	NA	NA	NA	11064	NR_105869	102466761		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	0.045000	0.597015	
mm_137160.1	chr17	23790548	23790748	+	1	NA	NA	NA	-4571	NM_029798	76917	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	0.080000	0.651741	
mm_111880.1	chr12	108003992	108004192	-	1	NA	NA	NA	-678	NM_021399	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.060000	0.537313	
mm_155143.1	chrX	52788191	52788391	+	1	NA	NA	NA	-2909	NM_001034059	434778	Mm.23411	NM_001034059	ENSMUSG00000073207	Ccdc160	6330534C20Rik	coiled-coil domain containing 160	protein-coding	0.015000	0.422886	
mm_67119.1	chr7	70361504	70361704	-	1	NA	NA	NA	-1011	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.080000	0.577114	
mm_90488.1	chr10	128015066	128015266	+	1	NA	NA	NA	-49	NM_008921	19075	Mm.2903	NM_008921	ENSMUSG00000025395	Prim1	AI324982	DNA primase, p49 subunit	protein-coding	0.060000	0.557214	-84(GACTCTAAAAGG,-,0.00)
mm_44892.1	chr5	35095924	35096124	-	1	NA	NA	NA	9673	NM_013587	16976	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.015000	0.552239	
mm_78691.1	chr9	40804130	40804330	+	1	NA	NA	NA	2957	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.015000	0.462687	
mm_39485.1	chr5	20882386	20882586	+	1	NA	NA	NA	33	NM_177601	212090	Mm.347525	NM_177601	ENSMUSG00000045435	Tmem60	BC027828	transmembrane protein 60	protein-coding	0.075000	0.597015	
mm_97244.1	chr11	75732940	75733140	+	1	NA	NA	NA	153	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.120000	0.676617	
mm_118347.1	chr13	114854347	114854547	-	1	NA	NA	NA	36210	NM_001113374	17434	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.010000	0.452736	8(CCTTAAAGAGTG,+,0.00)
mm_24494.1	chr3	92365941	92366141	+	1	NA	NA	NA	854	NM_011472	20760	Mm.10692	NM_011472	ENSMUSG00000050635	Sprr2f	-	small proline-rich protein 2F	protein-coding	0.005000	0.592040	
mm_149991.1	chr19	29252336	29252536	+	1	NA	NA	NA	633	NM_008413	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.035000	0.467662	
mm_32587.1	chr4	111414898	111415098	+	1	NA	NA	NA	-8	NR_033793	67621	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0.085000	0.696517	
mm_36739.1	chr4	99655938	99656138	-	1	NA	NA	NA	-261	NM_010425	15221	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	0.075000	0.587065	
mm_37377.1	chr4	120975085	120975285	-	1	NA	NA	NA	-1863	NR_105982	102465614		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.010000	0.447761	
mm_14804.1	chr2	145886836	145887036	+	1	NA	NA	NA	-16305	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.020000	0.447761	
mm_59417.1	chr7	27121601	27121801	+	1	NA	NA	NA	1746	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.015000	0.611940	
mm_110636.1	chr12	57546385	57546585	-	1	NA	NA	NA	-364	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.040000	0.621891	
mm_144149.1	chr18	5125513	5125713	+	1	NA	NA	NA	79024	NM_001347449	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.000000	0.502488	
mm_9890.1	chr1	186704860	186705060	-	1	NA	NA	NA	1029	NM_009367	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.040000	0.412935	5(CTTTTTTAAAGG,-,0.00),6(TTTTTTAAAGGA,+,0.00)
mm_27565.1	chr3	58577634	58577834	-	1	NA	NA	NA	1076	NM_001040396	69227	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	0.010000	0.373134	79(TGGTTTAAATGC,-,0.00)
mm_117378.1	chr13	72628499	72628699	-	1	NA	NA	NA	-35	NR_030701	328287	Mm.235072	NR_030701		Gm20554	D430050G20	predicted gene, 20554	ncRNA	0.070000	0.726368	
mm_133362.1	chr16	84703473	84703673	+	1	NA	NA	NA	-9450	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.045000	0.597015	
mm_45519.1	chr5	72559553	72559753	-	1	NA	NA	NA	-8	NM_133921	100978	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0.115000	0.616915	
mm_127227.1	chr15	99401719	99401919	+	1	NA	NA	NA	8600	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.015000	0.437811	
mm_5020.1	chr1	193153073	193153273	+	1	NA	NA	NA	61	NM_016851	54139	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	0.070000	0.706468	
mm_168614.1	chr11	76868270	76868470	-	1	NA	NA	NA	-21362	NM_007754	12874	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0.020000	0.477612	
mm_59780.1	chr7	28863733	28863933	+	1	NA	NA	NA	-553	NM_008496	16858	Mm.20973	NM_008496	ENSMUSG00000053522	Lgals7	Galectin-7|Pig1	lectin, galactose binding, soluble 7	protein-coding	0.020000	0.487562	
mm_122735.1	chr14	53845737	53845937	-	1	NA	NA	NA	408092	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.025000	0.522388	
mm_4081.1	chr1	166379284	166379484	+	1	NA	NA	NA	217	NM_030245	27878	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0.125000	0.641791	
mm_3534.1	chr1	150392722	150392922	+	1	NA	NA	NA	-16	NM_133780	108989	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0.080000	0.631841	
mm_151324.1	chr19	55893050	55893250	+	1	NA	NA	NA	-2171	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.020000	0.462687	
mm_54048.1	chr6	13838002	13838202	-	1	NA	NA	NA	1840	NM_001330666	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.030000	0.532338	
mm_90963.1	chr10	13335410	13335610	-	1	NA	NA	NA	-11350	NM_001033257	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.025000	0.432836	
mm_80107.1	chr9	70399236	70399436	+	1	NA	NA	NA	6417	NR_049200	100885839		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0.025000	0.606965	
mm_13971.1	chr2	121433426	121433626	+	1	NA	NA	NA	9075	NM_145973	269344	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	0.010000	0.398010	
mm_44410.1	chr5	17849659	17849859	-	1	NA	NA	NA	33	NM_001159557	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.467662	
mm_103927.1	chr11	83648047	83648247	-	1	NA	NA	NA	1231	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.020000	0.447761	
mm_118367.1	chr13	115102040	115102240	-	1	NA	NA	NA	-176	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.040000	0.562189	-32(TAGCATAAAAGG,-,0.00)
mm_145330.1	chr18	55939477	55939677	+	1	NA	NA	NA	-492555	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.015000	0.383085	
mm_32593.1	chr4	111720078	111720278	+	1	NA	NA	NA	168	NM_026470	67946	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	0.110000	0.741294	
mm_126857.1	chr15	89243249	89243449	+	1	NA	NA	NA	31790	NM_027805	71474	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	0.010000	0.457711	
mm_128376.1	chr15	42676681	42676881	-	1	NA	NA	NA	196	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.025000	0.452736	
mm_7216.1	chr1	93160176	93160376	-	1	NA	NA	NA	594	NM_001159940	71874	Mm.158766	NM_172411	ENSMUSG00000034159	2310007B03Rik	-	RIKEN cDNA 2310007B03 gene	protein-coding	0.020000	0.562189	
mm_136205.1	chr16	89833049	89833249	-	1	NA	NA	NA	-14797	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.040000	0.597015	
mm_103419.1	chr11	75573136	75573336	-	1	NA	NA	NA	-14843	NM_008850	18738	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.010000	0.557214	
mm_122253.1	chr14	34102601	34102801	-	1	NA	NA	NA	53	NM_001251843	105518	Mm.246608	NM_001251843	ENSMUSG00000095493	A630023A22Rik	AI461879	RIKEN cDNA A630023A22 gene	protein-coding	0.020000	0.532338	
mm_148003.1	chr18	67724480	67724680	-	1	NA	NA	NA	41	NM_001127177	19255	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	0.135000	0.721393	
mm_166654.1	chr6	86765502	86765702	-	1	NA	NA	NA	9512	NM_001331120	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.000000	0.432836	
mm_105005.1	chr11	100376794	100376994	-	1	NA	NA	NA	-20753	NM_010404	15114	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.050000	0.661692	
mm_70268.1	chr8	3587604	3587804	+	1	NA	NA	NA	254	NM_001347111	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.155000	0.736318	
mm_43191.1	chr5	128736078	128736278	+	1	NA	NA	NA	-68	NM_021311	57749	Mm.272720	NM_021311	ENSMUSG00000029423	Piwil1	MIWI	piwi-like RNA-mediated gene silencing 1	protein-coding	0.065000	0.696517	
mm_32599.1	chr4	111827889	111828089	+	1	NA	NA	NA	74807	NM_145551	230612	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding	0.005000	0.333333	46(GTCTTGAAAAGC,-,0.00)
mm_9963.1	chr1	191164717	191164917	-	1	NA	NA	NA	0	NM_001109759	619288	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	0.010000	0.542289	
mm_28801.1	chr3	96209557	96209757	-	1	NA	NA	NA	-10259	NM_178213	621893		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	0.040000	0.502488	
mm_61565.1	chr7	79686399	79686599	+	1	NA	NA	NA	26303	NM_029835	77011	Mm.28132	NM_029835	ENSMUSG00000046591	Ticrr	5730590G19Rik|BC028450|Lrrk1	TOPBP1-interacting checkpoint and replication regulator	protein-coding	0.005000	0.313433	
mm_35775.1	chr4	46403950	46404150	-	1	NA	NA	NA	133	NM_053149	93966	Mm.25793	NM_053149	ENSMUSG00000028332	Hemgn	4921524M03Rik|AI317176|EDAG|Hgn|mNDR	hemogen	protein-coding	0.020000	0.437811	3(GCTTTTAGGCTG,+,0.00)
mm_30897.1	chr4	32335834	32336034	+	1	NA	NA	NA	-81501	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.025000	0.487562	
mm_111592.1	chr12	101975841	101976041	-	1	NA	NA	NA	-33	NM_016856	51786	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.085000	0.631841	
mm_109151.1	chr12	107690972	107691172	+	1	NA	NA	NA	44416	NR_045973	74968	Mm.359821	NR_045973	ENSMUSG00000085641	4930465M20Rik	4930431H15Rik	RIKEN cDNA 4930465M20 gene	ncRNA	0.035000	0.422886	
mm_120844.1	chr14	75199212	75199412	+	1	NA	NA	NA	-42975	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.025000	0.497512	
mm_83602.1	chr9	48495228	48495428	-	1	NA	NA	NA	2	NM_001326355	67010	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	0.140000	0.706468	
mm_118868.1	chr14	25855505	25855705	+	1	NA	NA	NA	13450	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.025000	0.487562	
mm_132679.1	chr16	42925833	42926033	+	1	NA	NA	NA	-13863	NR_040402	100503040	Mm.490721	NR_040402		Gm19522	-	predicted gene, 19522	ncRNA	0.000000	0.288557	17(GGATTTAAAAAC,-,0.00)
mm_39820.1	chr5	30778775	30778975	+	1	NA	NA	NA	-35766	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.010000	0.517413	
mm_127572.1	chr15	102279422	102279622	+	1	NA	NA	NA	66	NM_134100	106073	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0.135000	0.776119	
mm_156499.1	chrX	144363961	144364161	+	1	NA	NA	NA	46095	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.045000	0.552239	
mm_134950.1	chr16	31300391	31300591	-	1	NA	NA	NA	14317	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.010000	0.412935	
mm_88586.1	chr10	79710679	79710879	+	1	NA	NA	NA	-5855	NM_008226	15166	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	0.045000	0.572139	
mm_3870.1	chr1	160989480	160989680	+	1	NA	NA	NA	10974	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.040000	0.552239	
mm_62063.1	chr7	92448864	92449064	+	1	NA	NA	NA	-112185	NM_025515	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.005000	0.442786	
mm_85016.1	chr9	88273241	88273441	-	1	NA	NA	NA	-54268	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	0.000000	0.482587	
mm_67885.1	chr7	99349037	99349237	-	1	NA	NA	NA	4102	NM_009825	12406	Mm.22708	NM_009825	ENSMUSG00000070436	Serpinh1	BERF-1|Cbp1|Cbp2|Hsp47|J6|Serpinh2|gp46	serine (or cysteine) peptidase inhibitor, clade H, member 1	protein-coding	0.060000	0.631841	
mm_153701.1	chr19	44397611	44397811	-	1	NA	NA	NA	9998	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.283582	
mm_51461.1	chr6	82070619	82070819	+	1	NA	NA	NA	29091	NM_145570	232146	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	0.020000	0.537313	
mm_164988.1	chr19	11165501	11165701	-	1	NA	NA	NA	-281	NM_027074	69416	Mm.72491	NM_027074	ENSMUSG00000024728	1700025F22Rik	-	RIKEN cDNA 1700025F22 gene	protein-coding	0.000000	0.442786	
mm_140400.1	chr17	87638313	87638513	+	1	NA	NA	NA	2434	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.015000	0.447761	
mm_93307.1	chr10	98689978	98690178	-	1	NA	NA	NA	-225074	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.000000	0.318408	-95(GATTTTAAAAGG,-,0.00)
mm_28140.1	chr3	87263455	87263655	-	1	NA	NA	NA	-31	NM_030707	80891	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	0.005000	0.497512	
mm_67471.1	chr7	80419915	80420115	-	1	NA	NA	NA	-14579	NM_001081454	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.020000	0.537313	-79(GTCTTTATATGC,-,0.00)
mm_20831.1	chr2	147013692	147013892	-	1	NA	NA	NA	732	NM_011917	24128	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	0.060000	0.462687	
mm_40841.1	chr5	73284169	73284369	+	1	NA	NA	NA	-85	NR_040687	72276	Mm.271215	NR_040687	ENSMUSG00000100175	1700025M24Rik	-	RIKEN cDNA 1700025M24 gene	ncRNA	0.000000	0.492537	
mm_46446.1	chr5	105109334	105109534	-	1	NA	NA	NA	858	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.000000	0.383085	
mm_39120.1	chr4	154964252	154964452	-	1	NA	NA	NA	229	NR_131230	269614	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	0.125000	0.706468	
mm_113948.1	chr13	50417829	50418029	+	1	NA	NA	NA	52	NM_175401	109082	Mm.18638	NM_175401	ENSMUSG00000037816	Fbxw17	1110064L07Rik|C85886	F-box and WD-40 domain protein 17	protein-coding	0.090000	0.681592	
mm_160872.1	chr11	67770946	67771146	-	1	NA	NA	NA	107	NM_175681	93896	Mm.118883	NM_175681	ENSMUSG00000049928	Glp2r	9530092J08Rik|GLP-2	glucagon-like peptide 2 receptor	protein-coding	0.035000	0.577114	
mm_30869.1	chr4	32149372	32149572	+	1	NA	NA	NA	185365	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.015000	0.422886	
mm_165544.1	chr2	181887885	181888085	+	1	NA	NA	NA	23625	NM_025901	67005	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	0.005000	0.378109	37(CTCTTTAAAAAC,-,0.00)
mm_50778.1	chr6	53680992	53681192	+	1	NA	NA	NA	107718	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.035000	0.646766	
mm_39567.1	chr5	23387209	23387409	+	1	NA	NA	NA	47044	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.030000	0.388060	52(CTCTTTAAAAGA,-,0.00),53(TCTTTAAAAGAA,+,0.00),74(CTTTTTAAAAAG,+,0.00),74(CTTTTTAAAAAG,-,0.00)
mm_30977.1	chr4	34588407	34588607	+	1	NA	NA	NA	26435	NM_001159563	50793	Mm.399624	NM_015824	ENSMUSG00000040044	Orc3	Orc3l	origin recognition complex, subunit 3	protein-coding	0.000000	0.298507	66(GCCTATTAAGAC,-,0.00)
mm_22846.1	chr3	28034570	28034770	+	1	NA	NA	NA	50499	NM_008875	18805	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.005000	0.447761	
mm_19305.1	chr2	90490984	90491184	-	1	NA	NA	NA	-11910	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.010000	0.422886	
mm_106467.1	chr11	120070578	120070778	-	1	NA	NA	NA	16149	NM_009734	12009	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	0.045000	0.651741	
mm_41881.1	chr5	105400313	105400513	+	1	NA	NA	NA	-15362	NM_001033550	433926	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0.020000	0.412935	
mm_87821.1	chr10	60346806	60347006	+	1	NA	NA	NA	55	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.090000	0.706468	
mm_9703.1	chr1	179156186	179156386	-	1	NA	NA	NA	361717	NM_027188	69726	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.010000	0.502488	
mm_164674.1	chr17	45747024	45747224	+	1	NA	NA	NA	-13280	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0.025000	0.562189	
mm_148736.1	chr19	5912853	5913053	+	1	NA	NA	NA	-82	NM_001291078	19708	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	0.080000	0.616915	
mm_101160.1	chr11	16972862	16973062	-	1	NA	NA	NA	21552	NM_176982	319701	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.005000	0.348259	58(CTATTTATAGAC,+,0.00)
mm_122600.1	chr14	51039266	51039466	-	1	NA	NA	NA	2501	NM_183032	328401	Mm.99528	NM_183032	ENSMUSG00000052382	Rnase9	ESRL|Rak1	ribonuclease, RNase A family, 9 (non-active)	protein-coding	0.020000	0.437811	
mm_94987.1	chr11	31870784	31870984	+	1	NA	NA	NA	-56	NM_001290676	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.085000	0.656716	
mm_146729.1	chr18	15207694	15207894	-	1	NA	NA	NA	-56348	NM_134112	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.005000	0.492537	
mm_114602.1	chr13	75770959	75771159	+	1	NA	NA	NA	63575	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.010000	0.378109	
mm_122481.1	chr14	45658064	45658264	-	1	NA	NA	NA	-21	NM_001042719	114874	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	0.120000	0.751244	
mm_83342.1	chr9	44288218	44288418	-	1	NA	NA	NA	-74	NM_138955	192663	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP-binding cassette, sub-family G (WHITE), member 4	protein-coding	0.065000	0.621891	-89(GGCCCTTTAAGA,-,0.00),-88(GCCCTTTAAGAG,-,0.00),-87(CCCTTTAAGAGC,+,0.00),-87(CCCTTTAAGAGC,-,0.00),-86(CCTTTAAGAGCA,+,0.00)
mm_113629.1	chr13	41865838	41866038	+	1	NA	NA	NA	23	NR_033545	100038577	Mm.387093	NR_033545		Gm10790	ENSMUSG00000074927	predicted gene 10790	ncRNA	0.030000	0.482587	
mm_39821.1	chr5	30796801	30797001	+	1	NA	NA	NA	-17740	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.015000	0.611940	
mm_110721.1	chr12	69607212	69607412	-	1	NA	NA	NA	-24284	NM_001033236	207965	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0.015000	0.432836	
mm_57265.1	chr6	123286236	123286436	-	1	NA	NA	NA	3535	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.005000	0.407960	
mm_10268.1	chr2	9879656	9879856	+	1	NA	NA	NA	-1156	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.065000	0.621891	
mm_112226.1	chr12	113430368	113430568	-	1	NA	NA	NA	-59097	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.015000	0.497512	
mm_139828.1	chr17	69075582	69075782	+	1	NA	NA	NA	-81128	NM_013813	13823	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.100000	0.701493	
mm_122320.1	chr14	36935469	36935669	-	1	NA	NA	NA	-1	NM_028407	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.020000	0.452736	
mm_101985.1	chr11	50718747	50718947	-	1	NA	NA	NA	108884	NM_013922	30944	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding	0.020000	0.537313	78(CTGCTTAAAAGC,-,0.00)
mm_4595.1	chr1	178337786	178337986	+	1	NA	NA	NA	-102	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.155000	0.751244	
mm_4435.1	chr1	172506676	172506876	+	1	NA	NA	NA	6530	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.010000	0.512438	
mm_28949.1	chr3	100365681	100365881	-	1	NA	NA	NA	-60624	NR_040543	73806	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.000000	0.522388	
mm_152905.1	chr19	26046347	26046547	-	1	NA	NA	NA	374036	NM_145831	226049	Mm.275572	NM_145831	ENSMUSG00000048138	Dmrt2	Terra	doublesex and mab-3 related transcription factor 2	protein-coding	0.005000	0.452736	
mm_58186.1	chr6	142964321	142964521	-	1	NA	NA	NA	31	NM_011374	20449	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0.095000	0.676617	
mm_171618.1	chr4	151921647	151921847	-	1	NA	NA	NA	-11973	NM_172704	230935	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	0.035000	0.492537	-30(CTTTAAATACCC,+,0.00)
mm_96366.1	chr11	67199999	67200199	+	1	NA	NA	NA	-15	NM_030679	17879	Mm.477065	NM_030679	ENSMUSG00000056328	Myh1	A530084A17Rik|IId|IId/x|MHC-2X/D|MHC2X/D|MYHC-IIX|MdMs|MyHC-IId/x|MyHC-IIx/d|Myhs-f|Myhs-f2|Myhsf2	myosin, heavy polypeptide 1, skeletal muscle, adult	protein-coding	0.010000	0.452736	-32(TCCTATAAAAGT,-,0.00),9(CCTCATAAAGCT,+,0.00)
mm_96425.1	chr11	67257103	67257303	+	1	NA	NA	NA	19391	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.035000	0.611940	
mm_153546.1	chr19	42086174	42086374	-	1	NA	NA	NA	96	NM_198108	226123	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	0.080000	0.671642	
mm_66538.1	chr7	45154446	45154646	-	1	NA	NA	NA	-8	NM_145954	69748	Mm.82139	NM_145954	ENSMUSG00000007833	Aldh16a1	2410004H02Rik|AI452234|mFLJ00209	aldehyde dehydrogenase 16 family, member A1	protein-coding	0.105000	0.646766	
mm_138203.1	chr17	34293828	34294028	+	1	NA	NA	NA	-6157	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.005000	0.437811	
mm_165634.1	chr3	69126931	69127131	-	1	NA	NA	NA	61	NM_008467	16649	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	0.120000	0.731343	
mm_1787.1	chr1	78657762	78657962	+	1	NA	NA	NA	37	NM_001001981	195434	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0.155000	0.731343	
mm_102022.1	chr11	51644298	51644498	-	1	NA	NA	NA	-6556	NR_027958	97775	Mm.220299	NM_175289	ENSMUSG00000052563	D930048N14Rik	AI315703|R75254	RIKEN cDNA D930048N14 gene	ncRNA	0.060000	0.636816	
mm_131238.1	chr16	10488090	10488290	+	1	NA	NA	NA	12	NM_007575	12265	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.010000	0.492537	
mm_31333.1	chr4	46454699	46454899	+	1	NA	NA	NA	3873	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.005000	0.417910	
mm_7315.1	chr1	98095483	98095683	-	1	NA	NA	NA	49	NM_013626	18484	Mm.5121	NM_013626	ENSMUSG00000026335	Pam	PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding	0.145000	0.800995	
mm_46978.1	chr5	115272311	115272511	-	1	NA	NA	NA	484	NM_001302448	50849	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	0.130000	0.751244	
mm_108143.1	chr12	76255235	76255435	+	1	NA	NA	NA	103	NM_138745	108156	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0.085000	0.656716	
mm_133205.1	chr16	73497223	73497423	+	1	NA	NA	NA	834174	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.025000	0.482587	
mm_124067.1	chr14	78536767	78536967	-	1	NA	NA	NA	-7	NM_001164503	219181	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	0.150000	0.741294	
mm_14019.1	chr2	122150841	122151041	+	1	NA	NA	NA	3254	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.030000	0.462687	
mm_102327.1	chr11	57801345	57801545	-	1	NA	NA	NA	22	NR_131042	76516	Mm.28485	NR_131042	ENSMUSG00000087165	2010001A14Rik	-	RIKEN cDNA 2010001A14 gene	ncRNA	0.055000	0.616915	
mm_62864.1	chr7	114718552	114718752	+	1	NA	NA	NA	9	NM_054084	116903	Mm.273838	NM_054084	ENSMUSG00000030666	Calcb	CGRP2|Calc2	calcitonin-related polypeptide, beta	protein-coding	0.045000	0.547264	
mm_161881.1	chr18	37496896	37497096	+	1	NA	NA	NA	-2	NM_053144	93890	Mm.118311	NM_053144	ENSMUSG00000043313	Pcdhb19	Pcdhb11|PcdhbS	protocadherin beta 19	protein-coding	0.030000	0.442786	
mm_140884.1	chr17	23844056	23844256	-	1	NA	NA	NA	0	NM_027644	71003	Mm.328839	NM_027644	ENSMUSG00000024114	Prss41	4931440B09Rik|Tessp-1|Tessp1	protease, serine 41	protein-coding	0.045000	0.611940	
mm_169642.1	chr1	55088159	55088359	+	1	NA	NA	NA	111	NM_008303	15528	Mm.215667	NM_008303	ENSMUSG00000073676	Hspe1	10kDa|Hsp10|mt-cpn10	heat shock protein 1 (chaperonin 10)	protein-coding	0.135000	0.721393	
mm_64817.1	chr7	7277978	7278178	-	1	NA	NA	NA	211	NR_003555	76229	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	0.060000	0.626866	
mm_119857.1	chr14	54464082	54464282	+	1	NA	NA	NA	35	NM_022993	65107	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	0.130000	0.766169	
mm_153083.1	chr19	32387989	32388189	-	1	NA	NA	NA	365	NM_144792	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.170000	0.786070	
mm_15871.1	chr2	164834774	164834974	+	1	NA	NA	NA	1101	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.025000	0.567164	
mm_43769.1	chr5	140956462	140956662	+	1	NA	NA	NA	44034	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.020000	0.452736	
mm_106486.1	chr11	120231534	120231734	-	1	NA	NA	NA	-1313	NM_001347621	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.060000	0.552239	
mm_312.1	chr1	24210281	24210481	+	1	NA	NA	NA	15178	NM_001290691	12839	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding	0.020000	0.452736	-8(GGCCATAAAGGG,-,0.00),-6(CCATAAAGGGGC,+,0.00)
mm_5657.1	chr1	42651226	42651426	-	1	NA	NA	NA	43499	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.010000	0.378109	
mm_60310.1	chr7	44137177	44137377	+	1	NA	NA	NA	-13	NM_008454	16615	Mm.440887	NM_008454	ENSMUSG00000038968	Klk1b16	Klk16|mGk-16	kallikrein 1-related peptidase b16	protein-coding	0.000000	0.552239	
mm_47980.1	chr5	135911253	135911453	-	1	NA	NA	NA	23288	NM_018871	22628	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.050000	0.572139	
mm_93531.1	chr10	115362058	115362258	-	1	NA	NA	NA	104	NM_133683	67226	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0.080000	0.611940	
mm_22871.1	chr3	29082465	29082665	+	1	NA	NA	NA	-12	NM_001167748	75740	Mm.330948	NM_029412	ENSMUSG00000063600	Egfem1	6130401L20Rik|Efcab11	EGF-like and EMI domain containing 1	protein-coding	0.080000	0.731343	
mm_107300.1	chr12	30911596	30911796	+	1	NA	NA	NA	27	NM_013709	24057	Mm.218624	NM_013709	ENSMUSG00000020669	Sh3yl1	AI314953|Ray|YSC84	Sh3 domain YSC-like 1	protein-coding	0.105000	0.691542	
mm_88704.1	chr10	80148171	80148371	+	1	NA	NA	NA	-1	NM_001305798	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.085000	0.711443	
mm_47304.1	chr5	122372210	122372410	-	1	NA	NA	NA	-198	NM_024216	68080	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	0.110000	0.626866	
mm_104443.1	chr11	94976313	94976513	-	1	NA	NA	NA	-86	NM_009161	20391	Mm.18709	NM_009161	ENSMUSG00000001508	Sgca	50DAG|Asg	sarcoglycan, alpha (dystrophin-associated glycoprotein)	protein-coding	0.015000	0.532338	
mm_104657.1	chr11	97576345	97576545	-	1	NA	NA	NA	-1319	NM_018873	56013	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.020000	0.597015	
mm_88318.1	chr10	75564026	75564226	+	1	NA	NA	NA	-3796	NM_198860	192734	Mm.259320	NM_198860	ENSMUSG00000046807	Lrrc75b	AI646023|Fam211b	leucine rich repeat containing 75B	protein-coding	0.005000	0.527363	
mm_122167.1	chr14	31434223	31434423	-	1	NA	NA	NA	1777	NM_011894	24056	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.015000	0.393035	-34(GGACTTTAAAGG,-,0.00),-33(GACTTTAAAGGC,-,0.00),-32(ACTTTAAAGGCG,+,0.00)
mm_120892.1	chr14	75845051	75845251	+	1	NA	NA	NA	-105	NM_009429	22070	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	0.125000	0.741294	
mm_106356.1	chr11	118393539	118393739	-	1	NA	NA	NA	8292	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.025000	0.562189	
mm_24790.1	chr3	95545278	95545478	+	1	NA	NA	NA	-14299	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.020000	0.532338	
mm_108867.1	chr12	99340936	99341136	+	1	NA	NA	NA	109038	NM_183186	71375	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.030000	0.502488	
mm_126750.1	chr15	85736709	85736909	+	1	NA	NA	NA	1033	NM_011144	19013	Mm.212789	NM_011144	ENSMUSG00000022383	Ppara	4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar	peroxisome proliferator activated receptor alpha	protein-coding	0.030000	0.487562	
mm_13196.1	chr2	93219117	93219317	+	1	NA	NA	NA	31633	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.020000	0.472637	
mm_57405.1	chr6	124865204	124865404	-	1	NA	NA	NA	-1387	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.005000	0.502488	
mm_107641.1	chr12	52503910	52504110	+	1	NA	NA	NA	-12067	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0.180000	0.756219	
mm_61220.1	chr7	64392678	64392878	+	1	NA	NA	NA	7	NM_028626	73724	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	0.075000	0.666667	
mm_30491.1	chr3	156380553	156380753	-	1	NA	NA	NA	181034	NR_040398	329782	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA	0.015000	0.412935	
mm_2691.1	chr1	127729312	127729512	+	1	NA	NA	NA	-1	NM_001033041	266645	Mm.25735	NM_001033041	ENSMUSG00000026348	Acmsd	-	amino carboxymuconate semialdehyde decarboxylase	protein-coding	0.015000	0.452736	-99(ACTTTAATAGGG,+,0.00)
mm_48582.1	chr5	143527894	143528094	-	1	NA	NA	NA	-1	NM_009007	19353	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	RAS-related C3 botulinum substrate 1	protein-coding	0.105000	0.726368	
mm_23559.1	chr3	62339952	62340152	+	1	NA	NA	NA	1275	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	0.030000	0.567164	
mm_132392.1	chr16	35000476	35000676	+	1	NA	NA	NA	-21845	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.000000	0.427861	50(AGCTAGAAAAGG,-,0.00)
mm_84431.1	chr9	65908689	65908889	-	1	NA	NA	NA	5	NM_019797	56404	Mm.208379	NM_019797	ENSMUSG00000032386	Trip4	4930558E03Rik|ASC-1|Asc1|BB191711	thyroid hormone receptor interactor 4	protein-coding	0.040000	0.517413	-32(GCCTTTAAATAC,-,0.00),-30(CTTTAAATACCC,+,0.00)
mm_20330.1	chr2	127521178	127521378	-	1	NA	NA	NA	114	NM_001291005	56461	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0.030000	0.587065	
mm_8859.1	chr1	162724672	162724872	-	1	NA	NA	NA	15784	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.015000	0.447761	-95(TACTTTTAAGGG,-,0.00),-94(ACTTTTAAGGGG,+,0.00)
mm_96467.1	chr11	67617080	67617280	+	1	NA	NA	NA	20625	NM_001277079	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.010000	0.507463	
mm_70414.1	chr8	11448885	11449085	+	1	NA	NA	NA	-28944	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.010000	0.512438	58(GCCTTTTTAAGA,-,0.00),60(CTTTTTAAGACC,+,0.00)
mm_159100.1	chr2	36890620	36890820	-	1	NA	NA	NA	126	NM_146941	258943	Mm.377762	NM_146941	ENSMUSG00000075382	Olfr353	MOR127-3	olfactory receptor 353	protein-coding	0.010000	0.417910	
mm_166335.1	chr5	114379961	114380161	+	1	NA	NA	NA	444	NM_001159941	330171	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	0.075000	0.631841	
mm_162.1	chr1	12725274	12725474	+	1	NA	NA	NA	6829	NM_172294	240725	Mm.45563	NM_172294	ENSMUSG00000016918	Sulf1	AI467640|AW121680|mKIAA1077	sulfatase 1	protein-coding	0.015000	0.407960	
mm_137766.1	chr17	29490594	29490794	+	1	NA	NA	NA	-351	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.150000	0.835821	
mm_67805.1	chr7	98112527	98112727	-	1	NA	NA	NA	-3379	NM_001256083	17921	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.010000	0.577114	
mm_2376.1	chr1	93373702	93373902	+	1	NA	NA	NA	-94	NM_207031	404545	Mm.297411	NM_207031	ENSMUSG00000034107	Ano7	Ngep|Ngep-L|Pcanap5|Tmem16g	anoctamin 7	protein-coding	0.005000	0.547264	
mm_35963.1	chr4	53142684	53142884	-	1	NA	NA	NA	17111	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.015000	0.373134	
mm_146697.1	chr18	12941689	12941889	-	1	NA	NA	NA	52	NM_207530	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.130000	0.706468	
mm_71771.1	chr8	66444043	66444243	+	1	NA	NA	NA	42364	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.005000	0.427861	
mm_112269.1	chr12	114153619	114153819	-	1	NA	NA	NA	315747	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.010000	0.447761	
mm_135479.1	chr16	45991259	45991459	-	1	NA	NA	NA	19054	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.020000	0.378109	
mm_31004.1	chr4	40183482	40183682	+	1	NA	NA	NA	40317	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.025000	0.557214	
mm_146178.1	chr18	75370433	75370633	+	1	NA	NA	NA	3168	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.050000	0.671642	
mm_60042.1	chr7	31059299	31059499	+	1	NA	NA	NA	-536	NM_144556	243914	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	0.000000	0.606965	
mm_63726.1	chr7	130865587	130865787	+	1	NA	NA	NA	-37	NM_001346515	101476	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.105000	0.661692	
mm_69829.1	chr7	141271632	141271832	-	1	NA	NA	NA	5054	NM_028069	72040	Mm.29080	NM_028069	ENSMUSG00000025497	Cdhr5	1810074H01Rik|AI481143|Mucdhl|Mupcdh	cadherin-related family member 5	protein-coding	0.000000	0.567164	
mm_133614.1	chr16	91547153	91547353	+	1	NA	NA	NA	159	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.105000	0.736318	
mm_9438.1	chr1	172550585	172550785	-	1	NA	NA	NA	121	NR_040558	71319	Mm.123774	NR_040558	ENSMUSG00000085184	4933439K11Rik	-	RIKEN cDNA 4933439K11 gene	ncRNA	0.035000	0.562189	
mm_151501.1	chr19	58729218	58729418	+	1	NA	NA	NA	431	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.000000	0.303483	
mm_104191.1	chr11	87825931	87826131	-	1	NA	NA	NA	83	NM_080420	76113	Mm.41236	NM_080420	ENSMUSG00000009356	Lpo	5830499B15Rik	lactoperoxidase	protein-coding	0.025000	0.472637	
mm_155713.1	chrX	96096023	96096223	+	1	NA	NA	NA	78	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.075000	0.616915	
mm_45251.1	chr5	62677357	62677557	-	1	NA	NA	NA	88720	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.015000	0.393035	
mm_111360.1	chr12	86990508	86990708	-	1	NA	NA	NA	-1932	NM_001080943	238331	Mm.185890	NM_001080943	ENSMUSG00000048483	Zdhhc22	Gm262	zinc finger, DHHC-type containing 22	protein-coding	0.045000	0.736318	
mm_80089.1	chr9	70220656	70220856	+	1	NA	NA	NA	13406	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.015000	0.497512	
mm_103918.1	chr11	83589689	83589889	-	1	NA	NA	NA	3298	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.015000	0.412935	
mm_108029.1	chr12	73725564	73725764	+	1	NA	NA	NA	140868	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.005000	0.358209	
mm_103960.1	chr11	84164385	84164585	-	1	NA	NA	NA	2991	NM_001037932	628813	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690|OTTMUSG00000000997	predicted gene 11437	protein-coding	0.005000	0.472637	
mm_134633.1	chr16	21668250	21668450	-	1	NA	NA	NA	26315	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.010000	0.358209	
mm_57613.1	chr6	128137919	128138119	-	1	NA	NA	NA	5559	NM_175414	109246	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597	tetraspanin 9	protein-coding	0.005000	0.522388	
mm_124367.1	chr14	105892494	105892694	-	1	NA	NA	NA	4225	NM_011897	24064	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty homolog 2 (Drosophila)	protein-coding	0.015000	0.363184	
mm_38655.1	chr4	143299405	143299605	-	1	NA	NA	NA	59	NM_010329	14726	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding	0.065000	0.636816	
mm_83459.1	chr9	45262814	45263014	-	1	NA	NA	NA	3793	NR_106054	102466803		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.005000	0.447761	
mm_71394.1	chr8	46163602	46163802	+	1	NA	NA	NA	-5854	NM_025747	66756	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430|mKIAA1430	cilia and flagella associated protein 97	protein-coding	0.160000	0.726368	
mm_73225.1	chr8	103235788	103235988	+	1	NA	NA	NA	111646	NR_036588	69794	Mm.396139	NR_036588	ENSMUSG00000110340	1600027J07Rik	-	RIKEN cDNA 1600027J07 gene	ncRNA	0.005000	0.472637	
mm_141877.1	chr17	34850239	34850439	-	1	NA	NA	NA	-52	NM_138580	27632	Mm.653	NM_138580	ENSMUSG00000024369	Nelfe	D17H6S45|NELF-E|RD|Rdbp	negative elongation factor complex member E, Rdbp	protein-coding	0.160000	0.726368	
mm_106381.1	chr11	118494122	118494322	-	1	NA	NA	NA	17262	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.030000	0.587065	
mm_2724.1	chr1	128190296	128190496	+	1	NA	NA	NA	-11965	NR_029543	387147		NR_029543	ENSMUSG00000065520	Mir128-1	Mirn128|Mirn128-1|Mirn128a|mir-128-1	microRNA 128-1	ncRNA	0.005000	0.303483	
mm_101509.1	chr11	32265326	32265526	-	1	NA	NA	NA	2281	NM_181569	17168	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	0.000000	0.258706	
mm_30522.1	chr3	158561669	158561869	-	1	NA	NA	NA	452	NM_001291453	242274	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding	0.070000	0.681592	
mm_136.1	chr1	10284813	10285013	+	1	NA	NA	NA	-52243	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.000000	0.457711	
mm_49478.1	chr6	29529187	29529387	+	1	NA	NA	NA	5	NM_001252382	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.025000	0.567164	
mm_107009.1	chr12	11455955	11456155	+	1	NA	NA	NA	-24	NM_001111118	209550	Mm.341257	NM_001111118	ENSMUSG00000086022	Rad51ap2	EG209550	RAD51 associated protein 2	protein-coding	0.080000	0.701493	-35(GCCCTTTAAAAG,-,0.00),-34(CCCTTTAAAAGG,+,0.00),-34(CCCTTTAAAAGG,-,0.00),-33(CCTTTAAAAGGC,+,0.00),-32(CTTTAAAAGGCC,+,0.00)
mm_42208.1	chr5	112476276	112476476	+	1	NA	NA	NA	26950	NM_001177504	625464	Mm.389676	NM_001177504	ENSMUSG00000072722	Gm6588	EG625464	predicted gene 6588	protein-coding	0.015000	0.552239	
mm_31513.1	chr4	53825961	53826161	+	1	NA	NA	NA	16	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.115000	0.741294	
mm_82071.1	chr9	122903151	122903351	+	1	NA	NA	NA	14780	NM_001177505	382118	Mm.86999	NM_001177505	ENSMUSG00000063488	Zkscan7	BC042569|Zfp167	zinc finger with KRAB and SCAN domains 7	protein-coding	0.060000	0.621891	
mm_170237.1	chr17	89440476	89440676	+	1	NA	NA	NA	61335	NR_045952	100043904	Mm.396198	NR_045952		Gm4719	-	predicted gene 4719	ncRNA	0.015000	0.462687	
mm_103862.1	chr11	83302526	83302726	-	1	NA	NA	NA	-71	NM_027915	71770	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979	adaptor-related protein complex 2, beta 1 subunit	protein-coding	0.065000	0.572139	
mm_130114.1	chr15	89476306	89476506	-	1	NA	NA	NA	154	NR_077233	100532730	Mm.461541	NR_077233		C230037L18Rik	-	RIKEN cDNA C230037L18 gene	ncRNA	0.065000	0.636816	
mm_63151.1	chr7	123370212	123370412	+	1	NA	NA	NA	-397	NM_001316713	70497	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.055000	0.572139	
mm_121660.1	chr14	12344742	12344942	-	1	NA	NA	NA	1023	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	0.095000	0.691542	
mm_172183.1	chr6	4923899	4924099	-	1	NA	NA	NA	20679	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.000000	0.502488	
mm_161125.1	chr12	111274607	111274807	+	1	NA	NA	NA	3611	NM_033603	93835	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0.130000	0.726368	
mm_147566.1	chr18	54990281	54990481	-	1	NA	NA	NA	-201	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.040000	0.442786	
mm_167903.1	chrX	77534183	77534383	+	1	NA	NA	NA	23056	NM_020601	21372	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	0.000000	0.472637	
mm_86418.1	chr10	3540174	3540374	+	1	NA	NA	NA	-5	NM_027391	70337	Mm.24153	NM_027391	ENSMUSG00000019762	Iyd	0610009A07Rik|AI265638|Dehal1	iodotyrosine deiodinase	protein-coding	0.020000	0.502488	76(GTCTTTAAAAAT,-,0.00)
mm_71701.1	chr8	61909445	61909645	+	1	NA	NA	NA	-6851	NM_001293772	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.010000	0.522388	
mm_170580.1	chr19	57239437	57239637	-	1	NA	NA	NA	-23505	NM_178688	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.015000	0.492537	
mm_168884.1	chr12	4552458	4552658	-	1	NA	NA	NA	28445	NR_136891	102634330	Mm.402324	NR_136891		Gm31938	-	predicted gene, 31938	ncRNA	0.030000	0.492537	
mm_43311.1	chr5	134932267	134932467	+	1	NA	NA	NA	-6	NM_024479	79565	Mm.34235	NM_024479	ENSMUSG00000040557	Wbscr27	AW492986|BC002286	Williams Beuren syndrome chromosome region 27 (human)	protein-coding	0.055000	0.601990	
mm_90466.1	chr10	127776291	127776491	+	1	NA	NA	NA	-14	NM_153133	103142	Mm.235814	NM_153133	ENSMUSG00000056148	Rdh9	AI121090|Crad3	retinol dehydrogenase 9	protein-coding	0.010000	0.472637	
mm_20692.1	chr2	132792747	132792947	-	1	NA	NA	NA	11569	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.020000	0.567164	
mm_86393.1	chr9	123968348	123968548	-	1	NA	NA	NA	244	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.000000	0.412935	
mm_43753.1	chr5	140437086	140437286	+	1	NA	NA	NA	9847	NR_106005	102466792		NR_106005	ENSMUSG00000098319	Mir7038	Gm27955|mmu-mir-7038	microRNA 7038	ncRNA	0.005000	0.507463	
mm_78377.1	chr9	27790875	27791075	+	1	NA	NA	NA	-294	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.035000	0.601990	
mm_33949.1	chr4	137424688	137424888	+	1	NA	NA	NA	5732	NM_026419	67868	Mm.297477	NM_026419	ENSMUSG00000023433	Cela3b	0910001F22Rik|2310074F01Rik|AI504000|Ela3|Ela3b	chymotrypsin-like elastase family, member 3B	protein-coding	0.035000	0.567164	
mm_14727.1	chr2	144116084	144116284	+	1	NA	NA	NA	73106	NR_136884	433481	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.005000	0.512438	
mm_163373.1	chr12	42346619	42346819	+	1	NA	NA	NA	-860662	NM_010733	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.005000	0.288557	
mm_75846.1	chr8	70632340	70632540	-	1	NA	NA	NA	16	NM_001330687	23886	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	0.005000	0.592040	
mm_23164.1	chr3	40744132	40744332	+	1	NA	NA	NA	-1381	NM_011020	18415	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0.005000	0.522388	
mm_100390.1	chr11	119389849	119390049	+	1	NA	NA	NA	-523	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.060000	0.611940	
mm_154575.1	chrX	7429666	7429866	+	1	NA	NA	NA	-6778	NR_027924	68355	Mm.45111	NR_027924		2010204K13Rik	0610010M13Rik|Cip7	RIKEN cDNA 2010204K13 gene	ncRNA	0.015000	0.422886	
mm_104310.1	chr11	93614842	93615042	-	1	NA	NA	NA	270824	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.000000	0.517413	
mm_71376.1	chr8	45827172	45827372	+	1	NA	NA	NA	-7975	NR_045739	319940	Mm.441720	NR_045739	ENSMUSG00000085440	Sorbs2os	D330022K07Rik	sorbin and SH3 domain containing 2, opposite strand	ncRNA	0.000000	0.288557	-42(CCTTATAGACAA,+,0.00),-28(CTTTTTATGGCT,+,0.00)
mm_23631.1	chr3	66219879	66220079	+	1	NA	NA	NA	92	NM_008987	19288	Mm.276776	NM_008987	ENSMUSG00000027832	Ptx3	AI607804|TSG-14	pentraxin related gene	protein-coding	0.060000	0.552239	
mm_172364.1	chr7	120754133	120754333	-	1	NA	NA	NA	14676	NM_177697	233813	Mm.389939	NM_177697	ENSMUSG00000030889	Vwa3a	E030013G06Rik	von Willebrand factor A domain containing 3A	protein-coding	0.015000	0.417910	
mm_156643.1	chrX	157698973	157699173	+	1	NA	NA	NA	100	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.015000	0.482587	
mm_143831.1	chr17	84073659	84073859	-	1	NA	NA	NA	-4901	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.020000	0.517413	
mm_58577.1	chr7	4912445	4912645	+	1	NA	NA	NA	-2672	NM_170759	232816	Mm.27442	NM_170759	ENSMUSG00000074406	Zfp628	Zec|Znf628	zinc finger protein 628	protein-coding	0.005000	0.457711	
mm_48912.1	chr6	3993925	3994125	+	1	NA	NA	NA	13	NM_010314	14699	Mm.95398	NM_010314	ENSMUSG00000029663	Gngt1	G(y)1|Gng1	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1	protein-coding	0.000000	0.437811	-48(GCTTTAAAATCC,+,0.00)
mm_10057.1	chr1	193263899	193264099	-	1	NA	NA	NA	46	NM_008288	15483	Mm.28328	NM_008288	ENSMUSG00000016194	Hsd11b1	-	hydroxysteroid 11-beta dehydrogenase 1	protein-coding	0.005000	0.457711	
mm_35959.1	chr4	53130997	53131197	-	1	NA	NA	NA	28798	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.005000	0.447761	52(GTTTTAAAAGAG,+,0.00)
mm_42600.1	chr5	117509704	117509904	+	1	NA	NA	NA	95802	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.030000	0.577114	
mm_1.1	chr1	3674510	3674710	+	1	NA	NA	NA	-3112	NM_001011874	497097	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.005000	0.348259	23(CCTTTAATGCTC,+,0.00)
mm_160934.1	chr11	93099319	93099519	+	1	NA	NA	NA	129	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	0.085000	0.651741	
mm_62955.1	chr7	119617712	119617912	+	1	NA	NA	NA	-16	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.010000	0.512438	
mm_24779.1	chr3	95539935	95540135	+	1	NA	NA	NA	13249	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.010000	0.383085	-90(TTTTTTAAAAGG,-,0.00)
mm_104077.1	chr11	86586867	86587067	-	1	NA	NA	NA	-2809	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.427861	
mm_58720.1	chr7	13024054	13024254	+	1	NA	NA	NA	2	NM_011588	21849	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	0.085000	0.666667	
mm_147908.1	chr18	65393886	65394086	-	1	NA	NA	NA	-98	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.010000	0.522388	
mm_19464.1	chr2	92401068	92401268	-	1	NA	NA	NA	95	NM_011162	19099	Mm.2720	NM_011162	ENSMUSG00000027223	Mapk8ip1	IB1|JIP-1|Jip1|Prkm8ip|Skip|mjip-2a	mitogen-activated protein kinase 8 interacting protein 1	protein-coding	0.175000	0.830846	
mm_160802.1	chr11	6000514	6000714	-	1	NA	NA	NA	44856	NM_019661	56418	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0.015000	0.577114	
mm_98410.1	chr11	94363842	94364042	+	1	NA	NA	NA	29034	NM_029600	76408	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.010000	0.552239	
mm_89022.1	chr10	82354187	82354387	+	1	NA	NA	NA	-113012	NM_001105557	237411		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding	0.030000	0.572139	
mm_68569.1	chr7	115698095	115698295	-	1	NA	NA	NA	103414	NM_001277328	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.000000	0.373134	
mm_116512.1	chr13	45654609	45654809	-	1	NA	NA	NA	147265	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.000000	0.462687	
mm_27610.1	chr3	59210752	59210952	-	1	NA	NA	NA	30	NM_028808	74191	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.005000	0.373134	60(TGCTATAAAAGG,-,0.00)
mm_110969.1	chr12	76939986	76940186	-	1	NA	NA	NA	22162	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.020000	0.417910	
mm_114873.1	chr13	94130660	94130860	+	1	NA	NA	NA	72964	NM_172589	218454	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.015000	0.462687	
mm_107594.1	chr12	49377736	49377936	+	1	NA	NA	NA	-5047	NM_001160112	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.035000	0.587065	
mm_135963.1	chr16	74815102	74815302	-	1	NA	NA	NA	-404290	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.005000	0.263682	
mm_45925.1	chr5	89443425	89443625	-	1	NA	NA	NA	14373	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.020000	0.552239	
mm_145695.1	chr18	62323735	62323935	+	1	NA	NA	NA	-369	NM_008313	15562	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	0.035000	0.552239	
mm_153267.1	chr19	37077414	37077614	-	1	NA	NA	NA	-96329	NR_045329	319931	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.010000	0.472637	
mm_172743.1	chr8	79816199	79816399	+	1	NA	NA	NA	104479	NM_026904	68999	Mm.257445	NM_026904	ENSMUSG00000036977	Anapc10	1500026N15Rik|A830003M23Rik|APC10	anaphase promoting complex subunit 10	protein-coding	0.060000	0.527363	-33(GTGTATATAAGA,-,0.00)
mm_154453.1	chrM	2169	2369	-	1	NA	NA	NA	NA	NA									0.020000	0.313433	
mm_10169.1	chr2	4559551	4559751	+	1	NA	NA	NA	-103	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.055000	0.547264	
mm_123656.1	chr14	69243036	69243236	-	1	NA	NA	NA	41967	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.005000	0.497512	
mm_68329.1	chr7	106503987	106504187	-	1	NA	NA	NA	-63014	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.363184	-82(ACCTCTATAAGA,-,0.00)
mm_164135.1	chr15	50194675	50194875	+	1	NA	NA	NA	694274	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.005000	0.393035	
mm_42905.1	chr5	122501622	122501822	+	1	NA	NA	NA	503	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.125000	0.726368	
mm_10744.1	chr2	23097991	23098191	+	1	NA	NA	NA	29019	NM_001102438	74159	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.010000	0.437811	
mm_1030.1	chr1	58755021	58755221	+	1	NA	NA	NA	24569	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.000000	0.333333	
mm_152231.1	chr19	8708201	8708401	-	1	NA	NA	NA	5596	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.010000	0.462687	
mm_62084.1	chr7	92934819	92935019	+	1	NA	NA	NA	59666	NM_028243	72461	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.010000	0.407960	
mm_147310.1	chr18	40923712	40923912	-	1	NA	NA	NA	665451	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.000000	0.233831	
mm_79029.1	chr9	46012741	46012941	+	1	NA	NA	NA	21	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.130000	0.796020	
mm_71051.1	chr8	33697211	33697411	+	1	NA	NA	NA	-34603	NM_001167921	68153	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	0.045000	0.567164	
mm_70590.1	chr8	13173782	13173982	+	1	NA	NA	NA	14721	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.000000	0.497512	
mm_50551.1	chr6	49047233	49047433	+	1	NA	NA	NA	10815	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.030000	0.457711	
mm_31044.1	chr4	41135548	41135748	+	1	NA	NA	NA	-373	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.155000	0.786070	
mm_154460.1	chrM	3019	3219	-	1	NA	NA	NA	NA	NA									0.015000	0.338308	
mm_40035.1	chr5	33720727	33720927	+	1	NA	NA	NA	-897	NM_001205270	14184	Mm.6904	NM_008010	ENSMUSG00000054252	Fgfr3	CD333|FR3|Fgfr-3|Flg-2|HBGFR|Mfr3|sam3	fibroblast growth factor receptor 3	protein-coding	0.010000	0.537313	
mm_25571.1	chr3	116808174	116808374	+	1	NA	NA	NA	-108	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.090000	0.721393	
mm_103890.1	chr11	83574963	83575163	-	1	NA	NA	NA	3573	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.000000	0.407960	
mm_125449.1	chr15	49229392	49229592	+	1	NA	NA	NA	-437503	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0.015000	0.432836	-38(TTGTATAAAAAC,-,0.00)
mm_113444.1	chr13	35189164	35189364	+	1	NA	NA	NA	7641	NR_045616	100503727	Mm.32214	NR_045616	ENSMUSG00000102099	1700011B04Rik	-	RIKEN cDNA 1700011B04 gene	ncRNA	0.040000	0.582090	
mm_124200.1	chr14	98169469	98169669	-	1	NA	NA	NA	196	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.085000	0.646766	
mm_59554.1	chr7	28075133	28075333	+	1	NA	NA	NA	3997	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.030000	0.572139	
mm_149046.1	chr19	8826613	8826813	+	1	NA	NA	NA	7312	NM_001081196	68693	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0.005000	0.442786	
mm_82616.1	chr9	21769938	21770138	-	1	NA	NA	NA	-9752	NM_026282	67629	Mm.295642	NM_026282	ENSMUSG00000074476	Spc24	2410030K01Rik|AV109292|Spbc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	0.055000	0.621891	
mm_169893.1	chr16	48283644	48283844	+	1	NA	NA	NA	9	NM_001018002	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding	0.015000	0.482587	
mm_10138.1	chr2	4141176	4141376	+	1	NA	NA	NA	-135	NR_040500	73489	Mm.488103	NR_040500	ENSMUSG00000084859	1700080N15Rik	4933408D14Rik	RIKEN cDNA 1700080N15 gene	ncRNA	0.005000	0.437811	
mm_96611.1	chr11	69097638	69097838	+	1	NA	NA	NA	-1218	NM_011065	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.025000	0.542289	
mm_57102.1	chr6	122591024	122591224	-	1	NA	NA	NA	11320	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.035000	0.542289	
mm_132702.1	chr16	43363808	43364008	+	1	NA	NA	NA	56288	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.010000	0.537313	
mm_35568.1	chr4	41640233	41640433	-	1	NA	NA	NA	-31	NM_027147	69638	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.110000	0.706468	
mm_146401.1	chr18	82911230	82911430	+	1	NA	NA	NA	451	NM_183033	329003	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.080000	0.606965	
mm_67098.1	chr7	69907993	69908193	-	1	NA	NA	NA	411999	NR_045940	73796	Mm.410832	NR_045940	ENSMUSG00000108885	4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA	0.005000	0.412935	
mm_164616.1	chr17	31161440	31161640	-	1	NA	NA	NA	3513	NM_009362	21784	Mm.2854	NM_009362	ENSMUSG00000024032	Tff1	Bcei|PS2	trefoil factor 1	protein-coding	0.000000	0.517413	
mm_63463.1	chr7	127573479	127573679	+	1	NA	NA	NA	231	NM_026888	68961	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	0.070000	0.701493	
mm_56679.1	chr6	113747023	113747223	-	1	NA	NA	NA	-6442	NM_024206	110379	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0.015000	0.338308	-88(TCTTATAAACGG,+,0.00)
mm_95339.1	chr11	46817481	46817681	+	1	NA	NA	NA	6782	NM_178759	276891	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.010000	0.517413	
mm_41522.1	chr5	92532820	92533020	+	1	NA	NA	NA	-27263	NM_007644	12492	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.015000	0.537313	
mm_17770.1	chr2	32795985	32796185	-	1	NA	NA	NA	-11680	NM_025619	227736	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	0.040000	0.567164	
mm_48462.1	chr5	140826696	140826896	-	1	NA	NA	NA	3635	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.000000	0.348259	
mm_38638.1	chr4	143136542	143136742	-	1	NA	NA	NA	-480	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	0.015000	0.442786	
mm_140023.1	chr17	73870673	73870873	+	1	NA	NA	NA	65932	NM_020578	57440	Mm.18526	NM_020578	ENSMUSG00000024065	Ehd3	Ehd2	EH-domain containing 3	protein-coding	0.020000	0.512438	
mm_101230.1	chr11	20332487	20332687	-	1	NA	NA	NA	126	NM_018861	55963	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.055000	0.552239	
mm_27415.1	chr3	51400606	51400806	-	1	NA	NA	NA	-4159	NR_028121	67749	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	0.040000	0.502488	
mm_74541.1	chr8	9976215	9976415	-	1	NA	NA	NA	8	NM_176953	319583	Mm.80584	NM_176953	ENSMUSG00000049717	Lig4	5830471N16Rik|tiny	ligase IV, DNA, ATP-dependent	protein-coding	0.085000	0.681592	
mm_167921.1	chrX	102037173	102037373	+	1	NA	NA	NA	34034	NM_001278534	331474	Mm.23297	NM_183318	ENSMUSG00000049191	Rgag4	6430402L03Rik|Mar5|Mart5|mKIAA2001	retrotransposon gag domain containing 4	protein-coding	0.005000	0.562189	
mm_23389.1	chr3	57425343	57425543	+	1	NA	NA	NA	33	NM_145539	229302	Mm.26618	NM_145539	ENSMUSG00000027801	Tm4sf4	Iltmp	transmembrane 4 superfamily member 4	protein-coding	0.025000	0.442786	-82(TCATTTATGGGG,+,0.00)
mm_52303.1	chr6	108821528	108821728	+	1	NA	NA	NA	-7013	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.015000	0.452736	
mm_37314.1	chr4	119333526	119333726	-	1	NA	NA	NA	-13103	NM_001110130	66101	Mm.304080	NM_028677	ENSMUSG00000060288	Ppih	1100001J08Rik|2010111B15Rik|4833408F11Rik|AI464484|CYP-20|CYPH|D4Wsu43e	peptidyl prolyl isomerase H	protein-coding	0.020000	0.437811	
mm_159022.1	chr1	172261518	172261718	+	1	NA	NA	NA	-3194	NM_013734	27222	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	0.030000	0.487562	
mm_7470.1	chr1	120488089	120488289	-	1	NA	NA	NA	16895	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.005000	0.552239	
mm_111629.1	chr12	102439598	102439798	-	1	NA	NA	NA	115	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.100000	0.676617	
mm_14795.1	chr2	145860821	145861021	+	1	NA	NA	NA	-42320	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.040000	0.547264	
mm_69099.1	chr7	127019801	127020001	-	1	NA	NA	NA	1310	NM_001102563	69017	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.020000	0.606965	
mm_148945.1	chr19	7221773	7221973	+	1	NA	NA	NA	-4257	NM_007750	12868	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0.000000	0.522388	-35(GACCATAAAAAG,-,0.00),-33(CCATAAAAAGGG,+,0.00)
mm_14769.1	chr2	145730962	145731162	+	1	NA	NA	NA	29867	NR_033220	408057	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.030000	0.358209	
mm_108068.1	chr12	73941668	73941868	+	1	NA	NA	NA	-22762	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.010000	0.388060	
mm_125675.1	chr15	66577487	66577687	+	1	NA	NA	NA	15	NM_001081409	239510	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	0.170000	0.776119	
mm_80830.1	chr9	97015846	97016046	+	1	NA	NA	NA	2409	NM_145134	211949	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0.025000	0.552239	
mm_47895.1	chr5	134723119	134723319	-	1	NA	NA	NA	24104	NM_007925	13717	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	0.000000	0.447761	
mm_156594.1	chrX	152233144	152233344	+	1	NA	NA	NA	17	NM_013668	20591	Mm.142655	NM_013668	ENSMUSG00000025332	Kdm5c	D930009K15Rik|Jarid1c|Smcx|mKIAA0234	lysine (K)-specific demethylase 5C	protein-coding	0.045000	0.537313	
mm_111803.1	chr12	105009941	105010141	-	1	NA	NA	NA	-232	NM_172500	212073	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.120000	0.796020	
mm_120563.1	chr14	68123642	68123842	+	1	NA	NA	NA	-10	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.135000	0.706468	
mm_115718.1	chr13	15914259	15914459	-	1	NA	NA	NA	-97492	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.497512	
mm_19760.1	chr2	105399126	105399326	-	1	NA	NA	NA	93	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0.120000	0.776119	
mm_5720.1	chr1	44101889	44102089	-	1	NA	NA	NA	399	NM_029368	75623	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0.105000	0.507463	
mm_3217.1	chr1	135845490	135845690	+	1	NA	NA	NA	4729	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.010000	0.582090	
mm_37731.1	chr4	129573484	129573684	-	1	NA	NA	NA	57	NM_001162433	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.035000	0.626866	
mm_78628.1	chr9	38730908	38731108	+	1	NA	NA	NA	12740	NM_172767	67776	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0.000000	0.368159	24(TCTTTTAGAGTG,+,0.00)
mm_151839.1	chr19	5726121	5726321	-	1	NA	NA	NA	96	NM_001114595	114601	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0.115000	0.681592	
mm_62254.1	chr7	99268979	99269179	+	1	NA	NA	NA	733	NM_001043355	17760	Mm.154087	NM_010837	ENSMUSG00000055407	Map6	2810411E12Rik|Map-6|Mtap6|STOP	microtubule-associated protein 6	protein-coding	0.110000	0.696517	
mm_70451.1	chr8	11779185	11779385	+	1	NA	NA	NA	20955	NM_001113518	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.010000	0.482587	
mm_137545.1	chr17	27556826	27557026	+	1	NA	NA	NA	273	NM_001166477	111241	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1-rs1	ENSMUSG00000041059|Hmgi-rs1	high mobility group AT-hook I, related sequence 1	protein-coding	0.120000	0.741294	
mm_138411.1	chr17	35068636	35068836	+	1	NA	NA	NA	1411	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.030000	0.537313	
mm_77437.1	chr8	121578686	121578886	-	1	NA	NA	NA	20	NM_133765	76454	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0.155000	0.771144	
mm_100321.1	chr11	118014461	118014661	+	1	NA	NA	NA	12291	NR_105898	102466768		NR_105898	ENSMUSG00000098958	Mir6933	Gm27856|mmu-mir-6933	microRNA 6933	ncRNA	0.025000	0.601990	
mm_62715.1	chr7	110770530	110770730	+	1	NA	NA	NA	-1974	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.010000	0.437811	-85(TCTTTTATAGGG,+,0.00)
mm_75566.1	chr8	60452527	60452727	-	1	NA	NA	NA	-53497	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.015000	0.343284	
mm_119877.1	chr14	54883256	54883456	+	1	NA	NA	NA	-69	NM_007537	12050	Mm.6967	NM_007537	ENSMUSG00000089682	Bcl2l2	AW048834|Bcl-w|Gtrgal2|Gtrosa41|bclw|c98	BCL2-like 2	protein-coding	0.025000	0.666667	
mm_136795.1	chr17	12119158	12119358	+	1	NA	NA	NA	-26	NM_026644	68262	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.035000	0.532338	-62(AGCTTTAAAAGG,-,0.00),-61(GCTTTAAAAGGA,+,0.00)
mm_161837.1	chr17	84973909	84974109	+	1	NA	NA	NA	-43	NM_001159498	19043	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.010000	0.492537	-77(CCCCATATGAGG,-,0.00)
mm_24383.1	chr3	90248867	90249067	+	1	NA	NA	NA	775	NM_013901	30791	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0.035000	0.597015	
mm_11432.1	chr2	31962122	31962322	+	1	NA	NA	NA	11919	NM_145144	108897	Mm.24838	NM_145144	ENSMUSG00000001864	Aif1l	2810003C17Rik|AI043124|C87647|Iba2	allograft inflammatory factor 1-like	protein-coding	0.015000	0.562189	
mm_88741.1	chr10	80280308	80280508	+	1	NA	NA	NA	2244	NR_105876	102466207		NR_105876	ENSMUSG00000098672	Mir6911	Gm27822|mmu-mir-6911	microRNA 6911	ncRNA	0.005000	0.293532	
mm_67296.1	chr7	79145205	79145405	-	1	NA	NA	NA	3755	NM_001045489	17304	Mm.1451	NM_008594	ENSMUSG00000030605	Mfge8	AA408458|AI325141|MFG-E8|MP47|Mfgm|P47|SED1|lactadherin	milk fat globule-EGF factor 8 protein	protein-coding	0.025000	0.557214	
mm_20656.1	chr2	132103360	132103560	-	1	NA	NA	NA	41648	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.030000	0.542289	
mm_74668.1	chr8	13677484	13677684	-	1	NA	NA	NA	3	NM_009025	19414	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.115000	0.721393	
mm_110194.1	chr12	27340227	27340427	-	1	NA	NA	NA	2391	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.005000	0.308458	
mm_101503.1	chr11	32199275	32199475	-	1	NA	NA	NA	904	NM_001134458	16199	Mm.384	NM_008374	ENSMUSG00000020279	Il9r	-	interleukin 9 receptor	protein-coding	0.010000	0.621891	
mm_163839.1	chr14	19417817	19418017	-	1	NA	NA	NA	184670	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.348259	
mm_147986.1	chr18	67610705	67610905	-	1	NA	NA	NA	30531	NM_001081073	225659	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0.215000	0.815920	
mm_138796.1	chr17	37532045	37532245	+	1	NA	NA	NA	2188	NM_001005485	545205	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	0.000000	0.407960	
mm_84834.1	chr9	78347049	78347249	-	1	NA	NA	NA	-4	NM_008182	14858	Mm.422778	NM_008182	ENSMUSG00000057933	Gsta2	Gst2-2|Gstc-2|Gstc2	glutathione S-transferase, alpha 2 (Yc2)	protein-coding	0.005000	0.487562	
mm_41257.1	chr5	88934126	88934326	+	1	NA	NA	NA	46966	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.025000	0.522388	77(GTGTTTAAAGAG,-,0.00)
mm_102566.1	chr11	61493786	61493986	-	1	NA	NA	NA	380	NM_001291037	23939	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7	mitogen-activated protein kinase 7	protein-coding	0.060000	0.641791	
mm_125173.1	chr15	31565286	31565486	+	1	NA	NA	NA	-3526	NM_181588	69574	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0.015000	0.457711	
mm_74482.1	chr8	4324945	4325145	-	1	NA	NA	NA	55	NM_010485	15568	Mm.119162	NM_010485	ENSMUSG00000040028	Elavl1	2410055N02Rik|HUR|Hua|W91709	ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R)	protein-coding	0.185000	0.771144	
mm_41462.1	chr5	90931160	90931360	+	1	NA	NA	NA	64	NM_026788	665563	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	0.150000	0.796020	
mm_171652.1	chr4	40723646	40723846	+	1	NA	NA	NA	816	NM_001164672	15502	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0.005000	0.373134	
mm_30735.1	chr4	13854706	13854906	+	1	NA	NA	NA	70024	NM_009822	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.000000	0.283582	
mm_78514.1	chr9	32915887	32916087	+	1	NA	NA	NA	12979	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.005000	0.472637	
mm_54287.1	chr6	29245695	29245895	-	1	NA	NA	NA	-26693	NM_001190461	69573	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.015000	0.482587	
mm_59799.1	chr7	29043537	29043737	+	1	NA	NA	NA	40057	NR_035489	100316710		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	0.005000	0.467662	
mm_30438.1	chr3	153633374	153633574	-	1	NA	NA	NA	91659	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.005000	0.402985	-69(TAGTTTATAAGC,-,0.00)
mm_101809.1	chr11	46372323	46372523	-	1	NA	NA	NA	17092	NM_001281968	16428	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	0.015000	0.432836	
mm_72667.1	chr8	84901874	84902074	+	1	NA	NA	NA	46	NM_010635	16596	Mm.4847	NM_010635	ENSMUSG00000054191	Klf1	Eklf|Nan	Kruppel-like factor 1 (erythroid)	protein-coding	0.005000	0.552239	
mm_161392.1	chr14	93888726	93888926	-	1	NA	NA	NA	62	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.005000	0.437811	
mm_109122.1	chr12	105705908	105706108	+	1	NA	NA	NA	26	NM_030187	78801	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	0.055000	0.681592	
mm_57375.1	chr6	124812898	124813098	-	1	NA	NA	NA	1298	NM_009415	21991	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.020000	0.527363	
mm_64058.1	chr7	140847723	140847923	+	1	NA	NA	NA	-93	NM_027019	69287	Mm.56404	NM_027019	ENSMUSG00000025482	Odf3	1700011O04Rik|SHIPPO1	outer dense fiber of sperm tails 3	protein-coding	0.005000	0.547264	15(TCCTTTTTAGGG,-,0.00),17(CTTTTTAGGGAG,+,0.00)
mm_86699.1	chr10	18508744	18508944	+	1	NA	NA	NA	37232	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	0.000000	0.507463	
mm_5952.1	chr1	56969770	56969970	-	1	NA	NA	NA	1464	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.080000	0.601990	
mm_139494.1	chr17	56162460	56162660	+	1	NA	NA	NA	69	NM_025566	66443	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0.050000	0.626866	
mm_15181.1	chr2	154190745	154190945	+	1	NA	NA	NA	27	NM_001012392	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.025000	0.567164	
mm_31625.1	chr4	59214066	59214266	+	1	NA	NA	NA	24616	NM_011673	22234	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.000000	0.502488	
mm_30896.1	chr4	32312979	32313179	+	1	NA	NA	NA	-104356	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.030000	0.517413	
mm_94735.1	chr11	21048819	21049019	+	1	NA	NA	NA	-42405	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.000000	0.427861	
mm_54928.1	chr6	48048848	48049048	-	1	NA	NA	NA	-834	NM_001081382	72306	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	0.065000	0.611940	
mm_9040.1	chr1	167243512	167243712	-	1	NA	NA	NA	41515	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.020000	0.512438	
mm_60078.1	chr7	34021653	34021853	+	1	NA	NA	NA	186	NM_009596	11354	Mm.8025	NM_009596	ENSMUSG00000066583	Scgb1b27	Abp|Abpa|Abpa27|Sal-1|Tcp	secretoglobin, family 1B, member 27	protein-coding	0.000000	0.442786	
mm_46545.1	chr5	106458314	106458514	-	1	NA	NA	NA	-248	NM_001005477	104382	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH-like 2 (Drosophila)	protein-coding	0.165000	0.736318	
mm_10601.1	chr2	18698892	18699092	+	1	NA	NA	NA	-30	NM_001001334	381350	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	0.095000	0.641791	
mm_13800.1	chr2	118926492	118926692	+	1	NA	NA	NA	95	NM_028117	72136	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	0.065000	0.716418	
mm_1016.1	chr1	58738342	58738542	+	1	NA	NA	NA	7890	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.015000	0.328358	-76(CCTTTTAAACAT,+,0.00)
mm_70391.1	chr8	10901954	10902154	+	1	NA	NA	NA	2132	NR_102285	71624	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0.010000	0.497512	67(TGCCATAAAGAG,-,0.00),69(CCATAAAGAGTC,+,0.00)
mm_7061.1	chr1	87510240	87510440	-	1	NA	NA	NA	22	NM_019867	53972	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	0.175000	0.825871	
mm_159309.1	chr2	180642488	180642688	-	1	NA	NA	NA	103	NM_178254	277353	Mm.473700	NM_178254	ENSMUSG00000038932	Tcfl5	AV260129|Figlb|Sosf1	transcription factor-like 5 (basic helix-loop-helix)	protein-coding	0.230000	0.875622	
mm_17185.1	chr2	25460877	25461077	-	1	NA	NA	NA	117	NM_153557	227622	Mm.261780	NM_153557	ENSMUSG00000047617	BC029214	D930050G13Rik|Paxx	cDNA sequence BC029214	protein-coding	0.085000	0.592040	
mm_86585.1	chr10	13060434	13060634	+	1	NA	NA	NA	-30254	NM_009538	22634	Mm.287857	NM_009538	ENSMUSG00000019817	Plagl1	Lot1|Zac1	pleiomorphic adenoma gene-like 1	protein-coding	0.015000	0.477612	
mm_144719.1	chr18	35119712	35119912	+	1	NA	NA	NA	900	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.025000	0.447761	-82(GACTTTAAAAGG,-,0.00)
mm_56015.1	chr6	86525836	86526036	-	1	NA	NA	NA	229	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.115000	0.681592	
mm_149412.1	chr19	11414351	11414551	+	1	NA	NA	NA	6790	NM_029499	64380	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	0.005000	0.407960	-61(GACTCTATGAGG,-,0.00)
mm_167937.1	chrX	111768311	111768511	-	1	NA	NA	NA	-71332	NM_001290459	245596	Mm.246623	NM_001080549	ENSMUSG00000034551	Hdx	D030011N01Rik|Gm380	highly divergent homeobox	protein-coding	0.000000	0.323383	
mm_15831.1	chr2	164653880	164654080	+	1	NA	NA	NA	986	NM_001160414	629754	Mm.190489	NM_001160414	ENSMUSG00000074594	Wfdc9	OTTMUSG00000001088	WAP four-disulfide core domain 9	protein-coding	0.020000	0.497512	
mm_1904.1	chr1	85849126	85849326	+	1	NA	NA	NA	-45284	NM_022417	64294	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.040000	0.552239	
mm_115446.1	chr13	118047198	118047398	+	1	NA	NA	NA	-327287	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA	0.020000	0.353234	
mm_155709.1	chrX	96095912	96096112	+	1	NA	NA	NA	-33	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.100000	0.706468	
mm_129484.1	chr15	78771786	78771986	-	1	NA	NA	NA	1559	NM_008595	17305	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.040000	0.611940	
mm_104262.1	chr11	88954797	88954997	-	1	NA	NA	NA	545	NM_029023	74617	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	0.005000	0.422886	
mm_124207.1	chr14	99046026	99046226	-	1	NA	NA	NA	10	NM_175245	76789	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0.180000	0.835821	
mm_119760.1	chr14	54168569	54168769	+	1	NA	NA	NA	85260	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.432836	
mm_149959.1	chr19	28963831	28964031	+	1	NA	NA	NA	11	NM_028922	74411	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	0.105000	0.721393	
mm_168581.1	chr1	171902945	171903145	-	1	NA	NA	NA	-14417	NM_001347187	30925	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	0.070000	0.552239	-32(CCCTATAAAAAG,-,0.00)
mm_77195.1	chr8	112011246	112011446	-	1	NA	NA	NA	8	NM_001286384	85305	Mm.196544	NM_053092	ENSMUSG00000031948	Kars	AA589550|AL024334|AL033315|AL033367|D8Ertd698e|D8Wsu108e|LysRS|mKIAA0070	lysyl-tRNA synthetase	protein-coding	0.075000	0.601990	
mm_62777.1	chr7	112391103	112391303	+	1	NA	NA	NA	22895	NM_027587	100504195	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	0.005000	0.572139	
mm_13587.1	chr2	112446818	112447018	+	1	NA	NA	NA	-8107	NM_133749	73024	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	0.000000	0.457711	
mm_85676.1	chr9	107769524	107769724	-	1	NA	NA	NA	1378	NM_148930	83486	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	0.010000	0.398010	
mm_85457.1	chr9	105412394	105412594	-	1	NA	NA	NA	11706	NM_001164828	66595	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1 (Drosophila)	protein-coding	0.010000	0.338308	
mm_673.1	chr1	40465870	40466070	+	1	NA	NA	NA	-36	NM_008365	16182	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0.025000	0.542289	
mm_157096.1	chrX	9437250	9437450	-	1	NA	NA	NA	31974	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.427861	
mm_154514.1	chrM	12359	12559	-	1	NA	NA	NA	NA	NA									0.020000	0.427861	73(GCCTATAAGTGG,-,0.00)
mm_134170.1	chr16	10796418	10796618	-	1	NA	NA	NA	305	NM_013637	19118	Mm.42733	NM_013637	ENSMUSG00000022501	Prm1	Prm-1	protamine 1	protein-coding	0.030000	0.532338	
mm_151803.1	chr19	5424784	5424984	-	1	NA	NA	NA	95	NM_024176	66556	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	0.105000	0.731343	
mm_124299.1	chr14	103055494	103055694	-	1	NA	NA	NA	8582	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.015000	0.393035	
mm_52158.1	chr6	98018616	98018816	+	1	NA	NA	NA	26933	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.020000	0.437811	9(CCTTAAAGACAC,+,0.00)
mm_16491.1	chr2	181013340	181013540	+	1	NA	NA	NA	25737	NM_015730	11438	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	0.005000	0.592040	
mm_127562.1	chr15	102203566	102203766	+	1	NA	NA	NA	21	NM_001289691	68744	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0.100000	0.731343	
mm_172741.1	chr8	79028570	79028770	+	1	NA	NA	NA	233	NM_178267	622675	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.030000	0.587065	
mm_155184.1	chrX	56317428	56317628	+	1	NA	NA	NA	-80	NR_038168	72030	Mm.426148	NR_038168	ENSMUSG00000085114	1600025M17Rik	Gm394	RIKEN cDNA 1600025M17 gene	ncRNA	0.035000	0.482587	
mm_11084.1	chr2	27735937	27736137	+	1	NA	NA	NA	25454	NM_001290482	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.010000	0.447761	
mm_243.1	chr1	19209019	19209219	+	1	NA	NA	NA	205	NM_001286340	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.030000	0.482587	
mm_57814.1	chr6	129462512	129462712	-	1	NA	NA	NA	10167	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.378109	-45(GACTTTAAAAGC,-,0.00),-44(ACTTTAAAAGCC,+,0.00)
mm_10166.1	chr2	4416203	4416403	+	1	NA	NA	NA	15327	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.000000	0.288557	
mm_98667.1	chr11	96282442	96282642	+	1	NA	NA	NA	637	NM_010461	15416	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	0.035000	0.452736	
mm_9201.1	chr1	171226313	171226513	-	1	NA	NA	NA	1359	NM_013474	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.010000	0.472637	
mm_163515.1	chr12	113427427	113427627	-	1	NA	NA	NA	-62038	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.492537	
mm_24180.1	chr3	88579761	88579961	+	1	NA	NA	NA	190	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.050000	0.601990	
mm_71975.1	chr8	70594267	70594467	+	1	NA	NA	NA	-114	NM_023627	71780	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.080000	0.641791	
mm_1792.1	chr1	78816811	78817011	+	1	NA	NA	NA	-38	NM_021342	57814	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	0.030000	0.482587	
mm_94376.1	chr11	5105118	5105318	+	1	NA	NA	NA	5053	NM_001290493	279766	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0.025000	0.611940	
mm_112984.1	chr13	21362755	21362955	+	1	NA	NA	NA	35	NM_016684	22758	Mm.24124	NM_016684	ENSMUSG00000036721	Zscan12	2510038J07Rik|FPM315|Zfp96|mKIAA0426|zfp-96	zinc finger and SCAN domain containing 12	protein-coding	0.070000	0.651741	
mm_172490.1	chr7	55086320	55086520	-	1	NA	NA	NA	251175	NM_178705	233271	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	0.030000	0.432836	-73(GTCTAGTTAAGG,-,0.00)
mm_101425.1	chr11	29548403	29548603	-	1	NA	NA	NA	-463	NM_001033865	78294	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	0.055000	0.442786	
mm_77229.1	chr8	115703864	115704064	-	1	NA	NA	NA	2930	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.005000	0.368159	-51(TTTTTTAAAGAC,+,0.00),18(CTGTTTAAAAAG,-,0.00)
mm_164083.1	chr15	4164862	4165062	+	1	NA	NA	NA	-137556	NR_028266	414066	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	0.015000	0.452736	-30(CTTTAAATACCC,+,0.00)
mm_167691.1	chr9	87731141	87731341	-	1	NA	NA	NA	19	NM_023814	76365	Mm.158789	NM_023814	ENSMUSG00000032419	Tbx18	2810012F10Rik|2810404D13Rik	T-box18	protein-coding	0.045000	0.492537	
mm_54766.1	chr6	41314608	41314808	-	1	NA	NA	NA	2	NM_001003405	103964	Mm.333022	NM_001003405	ENSMUSG00000036938	Try5	1810049H19Rik|Tc|Tesp4	trypsin 5	protein-coding	0.005000	0.502488	-34(GGGTATAAAGAC,-,0.00)
mm_24570.1	chr3	93444410	93444610	+	1	NA	NA	NA	2180	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.095000	0.691542	
mm_115313.1	chr13	112344642	112344842	+	1	NA	NA	NA	56224	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.015000	0.368159	-33(CAGTTTAAAAGG,-,0.00)
mm_34471.1	chr4	148160542	148160742	+	1	NA	NA	NA	-26	NM_176848	230904	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0.095000	0.691542	-54(GGCCTTTAAGAG,-,0.00),-53(GCCTTTAAGAGG,-,0.00),-52(CCTTTAAGAGGC,+,0.00)
mm_126202.1	chr15	78877206	78877406	+	1	NA	NA	NA	116	NM_145929	106039	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	0.135000	0.736318	
mm_1916.1	chr1	86021866	86022066	+	1	NA	NA	NA	24	NM_027029	70060	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0.005000	0.532338	
mm_86209.1	chr9	119984574	119984774	-	1	NA	NA	NA	-16	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.045000	0.592040	
mm_99706.1	chr11	106216353	106216553	+	1	NA	NA	NA	-86	NM_026009	67163	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	0.105000	0.636816	
mm_56030.1	chr6	86609221	86609421	-	1	NA	NA	NA	-18853	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.015000	0.492537	
mm_37901.1	chr4	132731616	132731816	-	1	NA	NA	NA	830	NM_201368	381560	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	0.025000	0.547264	
mm_161119.1	chr12	108306415	108306615	+	1	NA	NA	NA	245	NM_001044380	214305	Mm.36423	NM_001044380	ENSMUSG00000021260	Hhipl1	1600002O04Rik|AK129450|mKIAA1822	hedgehog interacting protein-like 1	protein-coding	0.145000	0.766169	
mm_139439.1	chr17	53769765	53769965	+	1	NA	NA	NA	53356	NR_073205	211496	Mm.251553	NM_177599	ENSMUSG00000062036	4932415M13Rik	-	RIKEN cDNA 4932415M13 gene	ncRNA	0.005000	0.452736	
mm_127422.1	chr15	101267036	101267236	+	1	NA	NA	NA	290	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.055000	0.547264	-34(TGGTATTAAAGG,-,0.00)
mm_83773.1	chr9	52110867	52111067	-	1	NA	NA	NA	-4656	NR_105750	102465150		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	0.010000	0.358209	
mm_34884.1	chr4	155587257	155587457	+	1	NA	NA	NA	-14059	NM_177186	320541	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	0.025000	0.577114	
mm_23196.1	chr3	41107827	41108027	+	1	NA	NA	NA	-24881	NM_027558	70804	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0.010000	0.492537	-31(GTATTTAAAGCC,+,0.00)
mm_152502.1	chr19	11165246	11165446	-	1	NA	NA	NA	-26	NM_027074	69416	Mm.72491	NM_027074	ENSMUSG00000024728	1700025F22Rik	-	RIKEN cDNA 1700025F22 gene	protein-coding	0.045000	0.597015	
mm_28089.1	chr3	85887211	85887411	-	1	NA	NA	NA	207	NM_177130	320302	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding	0.060000	0.651741	
mm_46976.1	chr5	115194205	115194405	-	1	NA	NA	NA	76	NM_001310712	29867	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	0.130000	0.786070	77(CCGCATTTAAGC,-,0.00),79(GCATTTAAGCGG,+,0.00)
mm_45468.1	chr5	69341460	69341660	-	1	NA	NA	NA	149	NM_175519	243043	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	0.100000	0.681592	
mm_152750.1	chr19	19111114	19111314	-	1	NA	NA	NA	-18	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.070000	0.597015	
mm_132855.1	chr16	48288930	48289130	+	1	NA	NA	NA	5295	NM_001018002	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding	0.010000	0.427861	
mm_20357.1	chr2	128127928	128128128	-	1	NA	NA	NA	453	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.080000	0.621891	
mm_166582.1	chr6	52902584	52902784	+	1	NA	NA	NA	6936	NM_001168277	231986	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.025000	0.447761	
mm_28354.1	chr3	89730457	89730657	-	1	NA	NA	NA	-161	NM_001146296	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.045000	0.522388	
mm_107282.1	chr12	29732809	29733009	+	1	NA	NA	NA	-46464	NR_046080	328075	Mm.447832	NR_046080		C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	0.020000	0.427861	
mm_109166.1	chr12	108306094	108306294	+	1	NA	NA	NA	-76	NM_001044380	214305	Mm.36423	NM_001044380	ENSMUSG00000021260	Hhipl1	1600002O04Rik|AK129450|mKIAA1822	hedgehog interacting protein-like 1	protein-coding	0.045000	0.661692	
mm_96745.1	chr11	69846799	69846999	+	1	NA	NA	NA	255	NR_033133	70310	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	0.055000	0.601990	
mm_63250.1	chr7	126595130	126595330	+	1	NA	NA	NA	-320	NM_145636	246779	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	0.015000	0.582090	
mm_172380.1	chr7	13034700	13034900	-	1	NA	NA	NA	-23	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.085000	0.646766	
mm_18867.1	chr2	75767926	75768126	-	1	NA	NA	NA	-63363	NM_010902	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.015000	0.417910	
mm_25881.1	chr3	130817784	130817984	+	1	NA	NA	NA	-87486	NM_001005859	68436	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.005000	0.502488	
mm_141944.1	chr17	35058619	35058819	-	1	NA	NA	NA	-316	NM_001190449	51793	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	0.010000	0.407960	-89(GAGCTTAAAAGA,-,0.00)
mm_152815.1	chr19	23093669	23093869	-	1	NA	NA	NA	-47457	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.010000	0.547264	
mm_21847.1	chr2	165852516	165852716	-	1	NA	NA	NA	5557	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.030000	0.537313	
mm_111230.1	chr12	84760717	84760917	-	1	NA	NA	NA	12295	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.025000	0.542289	
mm_40910.1	chr5	75600230	75600430	+	1	NA	NA	NA	25339	NM_021099	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	KIT proto-oncogene receptor tyrosine kinase	protein-coding	0.005000	0.398010	
mm_112602.1	chr13	14164189	14164389	+	1	NA	NA	NA	100505	NM_198122	94246	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.010000	0.358209	
mm_47132.1	chr5	120484977	120485177	-	1	NA	NA	NA	8530	NM_145565	231691	Mm.28685	NM_145565	ENSMUSG00000029597	Sds	4432411H13Rik|SDH	serine dehydratase	protein-coding	0.025000	0.601990	
mm_112936.1	chr13	20986070	20986270	+	1	NA	NA	NA	87129	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.000000	0.467662	
mm_122610.1	chr14	51057520	51057720	-	1	NA	NA	NA	-378	NM_001011875	497106	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	0.015000	0.517413	
mm_40012.1	chr5	33018903	33019103	+	1	NA	NA	NA	187	NM_011738	22629	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.180000	0.771144	
mm_168451.1	chr1	141189590	141189790	+	1	NA	NA	NA	-533288	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0.025000	0.502488	
mm_51714.1	chr6	86790628	86790828	+	1	NA	NA	NA	2856	NM_013471	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.025000	0.457711	
mm_36978.1	chr4	109531129	109531329	-	1	NA	NA	NA	-25	NM_001199090	67646	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	0.000000	0.437811	-48(GCTTTTATGGCA,+,0.00)
mm_135742.1	chr16	55865468	55865668	-	1	NA	NA	NA	-26927	NM_001159395	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.000000	0.308458	-75(CTGTTTTAAAAG,-,0.00),-73(GTTTTAAAAGTG,+,0.00)
mm_62335.1	chr7	100494200	100494400	+	1	NA	NA	NA	942	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.030000	0.532338	
mm_88716.1	chr10	80157853	80158053	+	1	NA	NA	NA	8271	NM_001305799	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.020000	0.457711	
mm_56185.1	chr6	88504882	88505082	-	1	NA	NA	NA	13818	NM_016906	53421	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0.000000	0.368159	
mm_124124.1	chr14	79662010	79662210	-	1	NA	NA	NA	73	NM_001310655	16840	Mm.46561	NM_010701	ENSMUSG00000022025	Cnmd	Bricd3|ChM-I|Chmd|Lect1	chondromodulin	protein-coding	0.020000	0.572139	
mm_34280.1	chr4	141424540	141424740	+	1	NA	NA	NA	3861	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.000000	0.527363	
mm_110812.1	chr12	72236600	72236800	-	1	NA	NA	NA	27	NM_001007596	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.185000	0.796020	
mm_19095.1	chr2	79409501	79409701	-	1	NA	NA	NA	19387	NM_001048176	228094	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0.020000	0.467662	-35(CGATTTATAAGG,-,0.00)
mm_124635.1	chr15	4069253	4069453	+	1	NA	NA	NA	-41947	NR_028266	414066	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	0.010000	0.378109	
mm_118395.1	chr13	119339826	119340026	-	1	NA	NA	NA	69085	NM_008710	18115	Mm.132584	NM_008710	ENSMUSG00000025453	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.020000	0.517413	
mm_41194.1	chr5	88327969	88328169	+	1	NA	NA	NA	10757	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.020000	0.452736	
mm_152700.1	chr19	17326861	17327061	-	1	NA	NA	NA	12544	NM_001136484	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.010000	0.383085	
mm_136917.1	chr17	13760214	13760414	+	1	NA	NA	NA	-227	NM_010806	17356	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.130000	0.771144	
mm_128537.1	chr15	54906781	54906981	-	1	NA	NA	NA	13265	NM_015744	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.015000	0.492537	61(GCTTTTAGATCA,+,0.00)
mm_25483.1	chr3	109123036	109123236	+	1	NA	NA	NA	-13	NM_172685	229731	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	0.090000	0.746269	
mm_149709.1	chr19	21653084	21653284	+	1	NA	NA	NA	-125	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.135000	0.756219	
mm_45477.1	chr5	69592151	69592351	-	1	NA	NA	NA	34	NM_001038015	67980	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	0.085000	0.631841	
mm_172674.1	chr8	48070458	48070658	-	1	NA	NA	NA	-28534	NM_001161516	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	0.020000	0.487562	
mm_55181.1	chr6	52164356	52164556	-	1	NA	NA	NA	375	NM_010451	15399	Mm.131	NM_010451	ENSMUSG00000014704	Hoxa2	AI324701|HOX1.11|Hox-1.11	homeobox A2	protein-coding	0.095000	0.641791	
mm_32574.1	chr4	110152564	110152764	+	1	NA	NA	NA	134170	NM_010488	15572	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein-coding	0.065000	0.567164	
mm_33334.1	chr4	129136861	129137061	+	1	NA	NA	NA	-38	NM_027402	384061	Mm.44075	NM_027402	ENSMUSG00000001334	Fndc5	1500001L03Rik|AI836596|C87088|PeP|Pxp	fibronectin type III domain containing 5	protein-coding	0.205000	0.855721	
mm_152359.1	chr19	10066496	10066696	-	1	NA	NA	NA	25048	NM_021890	60527	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0.010000	0.492537	
mm_95107.1	chr11	34070916	34071116	+	1	NA	NA	NA	23815	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.015000	0.542289	
mm_148046.1	chr18	70530152	70530352	-	1	NA	NA	NA	69	NM_001136090	26447	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	0.105000	0.716418	
mm_169938.1	chr16	62587133	62587333	+	1	NA	NA	NA	199483	NM_178925	106338	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	0.015000	0.497512	
mm_79965.1	chr9	66373150	66373350	+	1	NA	NA	NA	22800	NM_145617	235439	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.005000	0.422886	
mm_69386.1	chr7	131329415	131329615	-	1	NA	NA	NA	-16	NM_027037	69318	Mm.233840	NM_027037	ENSMUSG00000030858	1700007K09Rik	-	RIKEN cDNA 1700007K09 gene	protein-coding	0.015000	0.462687	-70(GCTTTTAGATGA,+,0.00)
mm_173163.1	chrX	40955551	40955751	-	1	NA	NA	NA	-445650	NM_016886	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding	0.030000	0.442786	
mm_113166.1	chr13	24813244	24813444	+	1	NA	NA	NA	11687	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.020000	0.407960	
mm_46141.1	chr5	93150616	93150816	-	1	NA	NA	NA	55779	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.010000	0.467662	
mm_21787.1	chr2	164856665	164856865	-	1	NA	NA	NA	943	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.055000	0.601990	
mm_94661.1	chr11	17198468	17198668	+	1	NA	NA	NA	13021	NM_025443	66249	Mm.27831	NM_025443	ENSMUSG00000020116	Pno1	1810003N24Rik|AA407421|AU015468|AU019495|AU042323|Emi3|Imi3	partner of NOB1 homolog	protein-coding	0.000000	0.298507	
mm_123640.1	chr14	68582078	68582278	-	1	NA	NA	NA	-106	NM_021475	58860	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0.005000	0.432836	
mm_79943.1	chr9	65924088	65924288	+	1	NA	NA	NA	15178	NM_173185	214897	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	0.005000	0.398010	
mm_2436.1	chr1	97563623	97563823	+	1	NA	NA	NA	98295	NM_133825	52392	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.000000	0.432836	
mm_50078.1	chr6	41392276	41392476	+	1	NA	NA	NA	20	NM_001038997	436523	Mm.449428	NM_001038997	ENSMUSG00000058119	Gm5771	EG436523	predicted gene 5771	protein-coding	0.000000	0.532338	-34(GGGTATAAAGGC,-,0.00)
mm_105304.1	chr11	102665912	102666112	-	1	NA	NA	NA	427	NM_001127576	268491	Mm.447643	NM_001127576	ENSMUSG00000051455	Meioc	Gm1564|Gm663	meiosis specific with coiled-coil domain	protein-coding	0.110000	0.681592	
mm_116104.1	chr13	28885525	28885725	-	1	NA	NA	NA	-203	NR_045053	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.040000	0.532338	
mm_66558.1	chr7	45238729	45238929	-	1	NA	NA	NA	10	NM_007645	12493	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0.035000	0.577114	
mm_57844.1	chr6	129467494	129467694	-	1	NA	NA	NA	5185	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.383085	
mm_121630.1	chr14	8360251	8360451	-	1	NA	NA	NA	18412	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.000000	0.417910	
mm_169336.1	chr14	12107447	12107647	-	1	NA	NA	NA	-82396	NM_001347593	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.025000	0.522388	66(TCTTTTATAAAG,+,0.00),68(TTTTATAAAGCG,+,0.00)
mm_123146.1	chr14	57099069	57099269	-	1	NA	NA	NA	5533	NM_008125	14619	Mm.390683	NM_008125	ENSMUSG00000046352	Gjb2	AI325222|Cnx26|Cx26|Gjb-2	gap junction protein, beta 2	protein-coding	0.005000	0.492537	
mm_584.1	chr1	39368015	39368215	+	1	NA	NA	NA	264	NM_001252218	114641	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.090000	0.671642	
mm_10343.1	chr2	11654161	11654361	+	1	NA	NA	NA	11469	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.005000	0.199005	
mm_156855.1	chrX	164401636	164401836	+	1	NA	NA	NA	-18051	NM_011081	18700	Mm.3781	NM_011081	ENSMUSG00000031381	Piga	AI194334|Pig-a	phosphatidylinositol glycan anchor biosynthesis, class A	protein-coding	0.010000	0.477612	
mm_32218.1	chr4	101647680	101647880	+	1	NA	NA	NA	-3	NM_175036	230514	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0.085000	0.666667	
mm_54651.1	chr6	38876437	38876637	-	1	NA	NA	NA	-347	NM_001294143	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.155000	0.761194	
mm_153720.1	chr19	44406528	44406728	-	1	NA	NA	NA	1081	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.040000	0.557214	
mm_154385.1	chrM	11365	11565	+	1	NA	NA	NA	NA	NA									0.015000	0.338308	
mm_45447.1	chr5	67427946	67428146	-	1	NA	NA	NA	-247	NM_001164806	666938	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.085000	0.671642	
mm_59603.1	chr7	28140074	28140274	+	1	NA	NA	NA	10708	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.045000	0.492537	
mm_104964.1	chr11	100145844	100146044	-	1	NA	NA	NA	-18	NM_008471	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.030000	0.557214	-16(GGGCATAAAAAG,-,0.00),-14(GCATAAAAAGCC,+,0.00)
mm_133650.1	chr16	91799121	91799321	+	1	NA	NA	NA	69850	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.015000	0.567164	
mm_32908.1	chr4	119126118	119126318	+	1	NA	NA	NA	17473	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.000000	0.582090	
mm_168448.1	chr1	140722816	140723016	+	1	NA	NA	NA	-66514	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0.030000	0.567164	
mm_60199.1	chr7	43409199	43409399	+	1	NA	NA	NA	1019	NM_172900	243958	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0.015000	0.557214	
mm_26972.1	chr3	24858103	24858303	-	1	NA	NA	NA	-74197	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.025000	0.487562	
mm_72354.1	chr8	79711710	79711910	+	1	NA	NA	NA	-10	NM_026904	68999	Mm.257445	NM_026904	ENSMUSG00000036977	Anapc10	1500026N15Rik|A830003M23Rik|APC10	anaphase promoting complex subunit 10	protein-coding	0.090000	0.616915	
mm_149095.1	chr19	8929754	8929954	+	1	NA	NA	NA	160	NM_144872	225898	Mm.31008	NM_144872	ENSMUSG00000071647	Eml3	BC022146	echinoderm microtubule associated protein like 3	protein-coding	0.125000	0.736318	
mm_115893.1	chr13	22009664	22009864	-	1	NA	NA	NA	-23	NM_019429	54373	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0.010000	0.492537	
mm_76036.1	chr8	77387308	77387508	-	1	NA	NA	NA	-129648	NR_028125	70345	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.025000	0.497512	
mm_16124.1	chr2	170155027	170155227	+	1	NA	NA	NA	-12452	NM_001159683	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.040000	0.517413	
mm_833.1	chr1	51478418	51478618	+	1	NA	NA	NA	-119	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.100000	0.671642	
mm_98198.1	chr11	87795213	87795413	+	1	NA	NA	NA	1529	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.025000	0.567164	
mm_18172.1	chr2	45109989	45110189	-	1	NA	NA	NA	188	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.070000	0.562189	
mm_72737.1	chr8	85084633	85084833	+	1	NA	NA	NA	1464	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.035000	0.547264	
mm_31719.1	chr4	62663542	62663742	+	1	NA	NA	NA	-10332	NM_001310706	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.005000	0.587065	
mm_32207.1	chr4	101507836	101508036	+	1	NA	NA	NA	-40	NM_001164585	72685	Mm.76494	NM_198412	ENSMUSG00000028528	Dnajc6	2810027M23Rik|mKIAA0473	DnaJ heat shock protein family (Hsp40) member C6	protein-coding	0.025000	0.477612	
mm_28981.1	chr3	101250518	101250718	-	1	NA	NA	NA	37321	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.015000	0.427861	
mm_23244.1	chr3	51223747	51223947	+	1	NA	NA	NA	-600	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.020000	0.467662	
mm_94940.1	chr11	29710721	29710921	+	1	NA	NA	NA	-7742	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.005000	0.402985	
mm_19324.1	chr2	90571999	90572199	-	1	NA	NA	NA	8548	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.000000	0.373134	
mm_124701.1	chr15	6522728	6522928	+	1	NA	NA	NA	-57019	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.020000	0.482587	
mm_85567.1	chr9	107231755	107231955	-	1	NA	NA	NA	54	NM_153413	208869	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	0.190000	0.791045	
mm_83332.1	chr9	44234060	44234260	-	1	NA	NA	NA	-114	NM_007619	12402	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.145000	0.741294	
mm_9510.1	chr1	173740917	173741117	-	1	NA	NA	NA	792	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.005000	0.308458	
mm_92640.1	chr10	80348312	80348512	-	1	NA	NA	NA	36	NM_001285435	66548	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0.085000	0.686567	
mm_61549.1	chr7	79364656	79364856	+	1	NA	NA	NA	22271	NM_020599	19771	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	0.020000	0.572139	
mm_90064.1	chr10	116301365	116301565	+	1	NA	NA	NA	91	NM_029928	19263	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0.140000	0.756219	
mm_68204.1	chr7	104395073	104395273	-	1	NA	NA	NA	-36527	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.005000	0.288557	35(CCTTTTATATTT,+,0.00)
mm_42088.1	chr5	110231025	110231225	+	1	NA	NA	NA	121	NM_027922	71782	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	0.150000	0.746269	
mm_149186.1	chr19	9899862	9900062	+	1	NA	NA	NA	-429	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.020000	0.452736	
mm_3887.1	chr1	161142625	161142825	+	1	NA	NA	NA	13	NM_028664	73844	Mm.38830	NM_028664	ENSMUSG00000044835	Ankrd45	4933409K03Rik	ankyrin repeat domain 45	protein-coding	0.070000	0.666667	
mm_77084.1	chr8	110522079	110522279	-	1	NA	NA	NA	-19823	NR_105058	100861869	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.015000	0.512438	
mm_94528.1	chr11	9117871	9118071	+	1	NA	NA	NA	-37	NM_001159401	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.025000	0.577114	
mm_30712.1	chr4	12140168	12140368	+	1	NA	NA	NA	151	NM_028226	72397	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	0.065000	0.606965	
mm_33105.1	chr4	124707802	124708002	+	1	NA	NA	NA	-6959	NM_029157	75062	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	0.025000	0.587065	
mm_76198.1	chr8	82660766	82660966	-	1	NA	NA	NA	113260	NM_145600	30932	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	0.000000	0.388060	
mm_66983.1	chr7	63938798	63938998	-	1	NA	NA	NA	17	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.120000	0.726368	
mm_164061.1	chr14	114945961	114946161	+	1	NA	NA	NA	-113	NR_126548	74982		NR_126548		1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	0.015000	0.388060	
mm_52865.1	chr6	122308829	122309029	+	1	NA	NA	NA	-81	NM_010749	17113	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	0.065000	0.597015	
mm_171269.1	chr3	88771368	88771568	+	1	NA	NA	NA	1131	NM_018804	229521	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0.045000	0.636816	
mm_99554.1	chr11	103638882	103639082	+	1	NA	NA	NA	46	NR_131143	78629	Mm.398236	NR_131109		1700072I22Rik	-	RIKEN cDNA 1700072I22 gene	ncRNA	0.010000	0.492537	
mm_144866.1	chr18	36726216	36726416	+	1	NA	NA	NA	499	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.060000	0.587065	
mm_6201.1	chr1	65186380	65186580	-	1	NA	NA	NA	-1	NM_001111320	15926	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.060000	0.577114	
mm_120480.1	chr14	65975600	65975800	+	1	NA	NA	NA	7217	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.055000	0.592040	
mm_125062.1	chr15	25940790	25940990	+	1	NA	NA	NA	64	NM_025459	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.015000	0.547264	
mm_172439.1	chr7	29965480	29965680	-	1	NA	NA	NA	-13687	NM_178384	72723	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77	zinc finger protein 74	protein-coding	0.060000	0.601990	
mm_52676.1	chr6	117916899	117917099	+	1	NA	NA	NA	-295	NM_001166427	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.095000	0.656716	
mm_42218.1	chr5	113138578	113138778	+	1	NA	NA	NA	-93	NM_001347397	243219	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.050000	0.597015	
mm_67418.1	chr7	80324006	80324206	-	1	NA	NA	NA	348	NM_173445	269955	Mm.474502	NM_173445	ENSMUSG00000038930	Rccd1	5830436H09|E430018M08Rik	RCC1 domain containing 1	protein-coding	0.070000	0.547264	-34(GCCCTTAAAAAG,-,0.00),-32(CCTTAAAAAGTG,+,0.00),47(CTGCTTAAAGGG,-,0.00)
mm_154825.1	chrX	17251452	17251652	+	1	NA	NA	NA	67816	NM_028916	74405	Mm.248531	NM_028916	ENSMUSG00000025038	Efhc2	4933407D04Rik|mRib72-2	EF-hand domain (C-terminal) containing 2	protein-coding	0.050000	0.502488	
mm_14854.1	chr2	148681042	148681242	+	1	NA	NA	NA	22	NM_028986	74533	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0.110000	0.721393	
mm_2419.1	chr1	94076925	94077125	+	1	NA	NA	NA	-24472	NM_008798	18566	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0.010000	0.472637	-33(CTCTATATAAAC,-,0.00)
mm_27656.1	chr3	64233479	64233679	-	1	NA	NA	NA	53838	NM_001104614	637004	Mm.469887	NM_001104614	ENSMUSG00000091572	Vmn2r3	EG637004	vomeronasal 2, receptor 3	protein-coding	0.030000	0.502488	
mm_80705.1	chr9	92249950	92250150	+	1	NA	NA	NA	-144	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.020000	0.462687	
mm_79647.1	chr9	59566407	59566607	+	1	NA	NA	NA	-11830	NM_175235	76183	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0.005000	0.398010	
mm_49886.1	chr6	38674554	38674754	+	1	NA	NA	NA	11585	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.010000	0.552239	
mm_87476.1	chr10	51492634	51492834	+	1	NA	NA	NA	1836	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.363184	
mm_80981.1	chr9	103217274	103217474	+	1	NA	NA	NA	12912	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.020000	0.552239	
mm_88829.1	chr10	80804630	80804830	+	1	NA	NA	NA	-518	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.010000	0.691542	
mm_69192.1	chr7	127273985	127274185	-	1	NA	NA	NA	-26	NM_009266	20768	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0.095000	0.562189	
mm_90652.1	chr10	128748420	128748620	+	1	NA	NA	NA	65	NM_001253704	78428	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	0.080000	0.616915	
mm_152999.1	chr19	30100811	30101011	-	1	NA	NA	NA	70398	NM_144873	109113	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0.020000	0.462687	
mm_74170.1	chr8	123420772	123420972	+	1	NA	NA	NA	9308	NM_023279	22152	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	0.050000	0.577114	
mm_20089.1	chr2	120850303	120850503	-	1	NA	NA	NA	15	NM_001024857	140810	Mm.275698	NM_080788	ENSMUSG00000090100	Ttbk2	2610507N02Rik|AI326283|B930008N24Rik|TTK|Ttbk|Ttbk1|mKIAA0847	tau tubulin kinase 2	protein-coding	0.120000	0.741294	
mm_148177.1	chr18	78142046	78142246	-	1	NA	NA	NA	-27	NM_001171011	108052	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0.020000	0.492537	27(GAGCCTAAAGGG,-,0.00)
mm_91167.1	chr10	20691910	20692110	-	1	NA	NA	NA	33068	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.025000	0.467662	
mm_113032.1	chr13	23530986	23531186	+	1	NA	NA	NA	42	NM_153173	69386	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.045000	0.552239	
mm_70709.1	chr8	15058970	15059170	+	1	NA	NA	NA	1417	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.020000	0.512438	
mm_146056.1	chr18	69649478	69649678	+	1	NA	NA	NA	-275981	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.000000	0.303483	
mm_77394.1	chr8	120293515	120293715	-	1	NA	NA	NA	-65385	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.010000	0.527363	
mm_120359.1	chr14	64104222	64104422	+	1	NA	NA	NA	-1	NM_028525	73382	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	0.015000	0.587065	
mm_57146.1	chr6	122657680	122657880	-	1	NA	NA	NA	31356	NM_139218	73708	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.010000	0.417910	
mm_158109.1	chrX	102071233	102071433	-	1	NA	NA	NA	-26	NM_001278534	331474	Mm.23297	NM_183318	ENSMUSG00000049191	Rgag4	6430402L03Rik|Mar5|Mart5|mKIAA2001	retrotransposon gag domain containing 4	protein-coding	0.100000	0.676617	
mm_84228.1	chr9	61965059	61965259	-	1	NA	NA	NA	-18360	NM_024245	71819	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.020000	0.547264	
mm_61796.1	chr7	83970169	83970369	+	1	NA	NA	NA	78269	NM_023403	67943	Mm.117365	NM_023403	ENSMUSG00000038503	Mesdc2	2210015O11Rik|AW537813|mKIAA0081|mesd|msd	mesoderm development candidate 2	protein-coding	0.005000	0.562189	
mm_110080.1	chr12	24650976	24651176	-	1	NA	NA	NA	-295	NM_178357	194655	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	0.125000	0.731343	
mm_88573.1	chr10	79681699	79681899	+	1	NA	NA	NA	-396	NM_177613	216150	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|UBE2R1	cell division cycle 34	protein-coding	0.110000	0.706468	
mm_8319.1	chr1	144775329	144775529	-	1	NA	NA	NA	-8	NM_022881	64214	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	0.015000	0.373134	
mm_24693.1	chr3	95015673	95015873	+	1	NA	NA	NA	-535	NM_030074	78266	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	0.065000	0.577114	
mm_69232.1	chr7	127708494	127708694	-	1	NA	NA	NA	107	NR_030428	791073		NR_030428	ENSMUSG00000076454	Mir762	Mirn762|mir-762|mmu-mir-762	microRNA 762	ncRNA	0.135000	0.786070	
mm_8961.1	chr1	165091814	165092014	-	1	NA	NA	NA	16	NR_040480	75857	Mm.109021	NR_040480	ENSMUSG00000102408	4930568G15Rik	-	RIKEN cDNA 4930568G15 gene	ncRNA	0.035000	0.572139	60(CCTTTAATGAGG,+,0.00)
mm_70269.1	chr8	3587693	3587893	+	1	NA	NA	NA	343	NM_001347111	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.140000	0.731343	
mm_55796.1	chr6	82752637	82752837	-	1	NA	NA	NA	21717	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.030000	0.407960	
mm_8199.1	chr1	138121413	138121613	-	1	NA	NA	NA	53613	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.437811	
mm_168247.1	chr10	81996960	81997160	+	1	NA	NA	NA	-51063	NM_001319203	408062	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	0.085000	0.661692	
mm_117598.1	chr13	89742590	89742790	-	1	NA	NA	NA	-178	NM_001134475	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.035000	0.601990	
mm_68339.1	chr7	106505944	106506144	-	1	NA	NA	NA	-64971	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.010000	0.333333	
mm_20064.1	chr2	120355390	120355590	-	1	NA	NA	NA	-2357	NR_027618	269338	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	0.010000	0.373134	
mm_84486.1	chr9	66845597	66845797	-	1	NA	NA	NA	-10991	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.005000	0.348259	
mm_41846.1	chr5	104436278	104436478	+	1	NA	NA	NA	186	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.010000	0.437811	
mm_33198.1	chr4	126286677	126286877	+	1	NA	NA	NA	-17	NM_199473	329941	Mm.296327	NM_199473	ENSMUSG00000056174	Col8a2	AI429819	collagen, type VIII, alpha 2	protein-coding	0.145000	0.800995	
mm_116249.1	chr13	33947593	33947793	-	1	NA	NA	NA	-11610	NM_001164117	20719	Mm.252210	NM_009254	ENSMUSG00000060147	Serpinb6a	4930482L21Rik|D330015H01Rik|PI-6|Serpinb6|Spi3|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6a	protein-coding	0.010000	0.378109	
mm_64600.1	chr7	3212047	3212247	-	1	NA	NA	NA	-6479	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.030000	0.557214	
mm_91145.1	chr10	19907567	19907767	-	1	NA	NA	NA	7	NM_008822	18634	Mm.338363	NM_008822	ENSMUSG00000020003	Pex7	MmPEX7	peroxisomal biogenesis factor 7	protein-coding	0.110000	0.611940	
mm_38441.1	chr4	139833471	139833671	-	1	NA	NA	NA	-603	NM_011039	18509	Mm.218760	NM_011039	ENSMUSG00000028736	Pax7	Pax-7	paired box 7	protein-coding	0.050000	0.577114	
mm_129654.1	chr15	81017997	81018197	-	1	NA	NA	NA	40332	NM_134091	105835	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.030000	0.651741	
mm_172201.1	chr6	51470605	51470805	+	1	NA	NA	NA	89	NM_007624	12417	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	0.105000	0.686567	
mm_38573.1	chr4	141815690	141815890	-	1	NA	NA	NA	10215	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.020000	0.442786	
mm_18148.1	chr2	45067003	45067203	-	1	NA	NA	NA	43174	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.000000	0.368159	
mm_167146.1	chr7	128461094	128461294	-	1	NA	NA	NA	319	NM_009383	21843	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.075000	0.706468	
mm_39736.1	chr5	29223849	29224049	+	1	NA	NA	NA	27956	NR_110371	56874	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	0.020000	0.557214	
mm_15101.1	chr2	153346083	153346283	+	1	NA	NA	NA	44	NM_001039939	228790	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0.185000	0.850746	
mm_6798.1	chr1	84150740	84150940	-	1	NA	NA	NA	68121	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.368159	
mm_11153.1	chr2	28534249	28534449	+	1	NA	NA	NA	885	NM_001145836	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.000000	0.562189	
mm_36197.1	chr4	62337030	62337230	-	1	NA	NA	NA	23418	NM_001045528	338355	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.015000	0.328358	
mm_122456.1	chr14	45318649	45318849	-	1	NA	NA	NA	-177	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.130000	0.756219	
mm_37384.1	chr4	120985154	120985354	-	1	NA	NA	NA	-11932	NR_105982	102465614		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.025000	0.527363	
mm_171451.1	chr4	145432392	145432592	+	1	NA	NA	NA	-31718	NR_002888	545700	Mm.389595	NR_002888	ENSMUSG00000052912	Smarca5-ps	9230115A19Rik|OTTMUSG00000011029	SWI/SNF related, matrix associated, actin depenent ragulator of chromatin, subfamily a, member 5, pseudogene	pseudo	0.015000	0.517413	
mm_77204.1	chr8	113848761	113848961	-	1	NA	NA	NA	-22	NM_172466	208936	Mm.167471	NM_172466	ENSMUSG00000053399	Adamts18	9630038L21|ADAMTS21|E130314N14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	protein-coding	0.085000	0.696517	
mm_140155.1	chr17	80127773	80127973	+	1	NA	NA	NA	402	NM_176963	319625	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.040000	0.572139	
mm_110715.1	chr12	69475478	69475678	-	1	NA	NA	NA	-28	NR_038060	76062	Mm.380755	NR_038060		5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0.025000	0.497512	
mm_92512.1	chr10	78439115	78439315	-	1	NA	NA	NA	4416	NR_105837	102465221		NR_105837	ENSMUSG00000098932	Mir6410	Gm27916|mmu-mir-6410	microRNA 6410	ncRNA	0.015000	0.512438	
mm_114255.1	chr13	56703355	56703555	+	1	NA	NA	NA	-213	NM_001164042	17129	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.175000	0.781095	
mm_118462.1	chr14	11122655	11122855	+	1	NA	NA	NA	39280	NM_010210	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.010000	0.442786	
mm_147849.1	chr18	63692123	63692323	-	1	NA	NA	NA	136	NM_016792	53382	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.110000	0.701493	
mm_4838.1	chr1	186705807	186706007	+	1	NA	NA	NA	82	NM_009367	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.045000	0.567164	-64(GGCTCTTTAAAC,-,0.00),-62(CTCTTTAAACCC,+,0.00)
mm_101565.1	chr11	34103637	34103837	-	1	NA	NA	NA	56536	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.010000	0.467662	
mm_487.1	chr1	36766983	36767183	+	1	NA	NA	NA	149	NM_001289765	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.005000	0.487562	
mm_111014.1	chr12	78983372	78983572	-	1	NA	NA	NA	6	NM_001170401	268567	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.020000	0.507463	
mm_164453.1	chr16	54166197	54166397	-	1	NA	NA	NA	1116940	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0.005000	0.303483	
mm_10135.1	chr2	4057814	4058014	+	1	NA	NA	NA	40231	NM_001347086	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.010000	0.477612	
mm_85866.1	chr9	110878800	110879000	-	1	NA	NA	NA	1183	NM_146260	20776	Mm.390229	NM_146260	ENSMUSG00000049555	Tmie	5131400L21Rik|Mm.87012|sr	transmembrane inner ear	protein-coding	0.000000	0.472637	
mm_165445.1	chr2	155357761	155357961	+	1	NA	NA	NA	-437	NM_001004721	228812	Mm.5434	NM_001004721	ENSMUSG00000038383	Pigu	5430426F17Rik|BC028278|Cdc91l1	phosphatidylinositol glycan anchor biosynthesis, class U	protein-coding	0.025000	0.462687	37(GCTTTTATAGAC,+,0.00)
mm_4895.1	chr1	189728195	189728395	+	1	NA	NA	NA	27	NM_008976	19250	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|OTTMUSG00000022087|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	0.125000	0.766169	
mm_87125.1	chr10	33411934	33412134	+	1	NA	NA	NA	-155677	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.030000	0.472637	
mm_62935.1	chr7	118731769	118731969	+	1	NA	NA	NA	-8402	NM_027815	71517	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	0.000000	0.373134	
mm_170460.1	chr1	89133445	89133645	+	1	NA	NA	NA	63083	NM_133816	98402	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.010000	0.577114	
mm_132776.1	chr16	44775055	44775255	+	1	NA	NA	NA	9419	NM_021325	57781	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.000000	0.402985	
mm_152201.1	chr19	7597878	7598078	-	1	NA	NA	NA	9198	NM_019516	56072	Mm.298242	NM_019516	ENSMUSG00000024972	Lgals12	AW987437|Grip1	lectin, galactose binding, soluble 12	protein-coding	0.035000	0.587065	
mm_98392.1	chr11	94214712	94214912	+	1	NA	NA	NA	3358	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.015000	0.333333	16(TTTTTTAAAGCT,+,0.00)
mm_7149.1	chr1	91403184	91403384	-	1	NA	NA	NA	2745	NR_026924	67086	Mm.396158	NR_026924	ENSMUSG00000100253	1700020N18Rik	-	RIKEN cDNA 1700020N18 gene	ncRNA	0.000000	0.383085	
mm_119868.1	chr14	54603502	54603702	+	1	NA	NA	NA	2306	NM_028890	74359	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	-	RIKEN cDNA 4931414P19 gene	protein-coding	0.045000	0.542289	
mm_132538.1	chr16	37868732	37868932	+	1	NA	NA	NA	432	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.090000	0.726368	
mm_91378.1	chr10	30600582	30600782	-	1	NA	NA	NA	67	NM_028604	73681	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	0.090000	0.646766	
mm_114400.1	chr13	63563300	63563500	+	1	NA	NA	NA	2335	NM_008957	19206	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes	patched 1	protein-coding	0.085000	0.681592	
mm_131719.1	chr16	21527365	21527565	+	1	NA	NA	NA	104347	NM_001285894	209018	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.025000	0.497512	
mm_135114.1	chr16	35832744	35832944	-	1	NA	NA	NA	38538	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.000000	0.378109	
mm_16001.1	chr2	167349628	167349828	+	1	NA	NA	NA	-550	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.110000	0.696517	
mm_170094.1	chr17	37995741	37995941	+	1	NA	NA	NA	-42819	NM_001011829	258094	Mm.377348	NM_001011829	ENSMUSG00000109376	Olfr761	MOR218-12|MOR218-5P|MOR218-6P|Olfr1552-ps1	olfactory receptor 761	protein-coding	0.010000	0.492537	
mm_77480.1	chr8	122475619	122475819	-	1	NA	NA	NA	345	NM_001033142	68718	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	0.165000	0.761194	
mm_110496.1	chr12	54203185	54203385	-	1	NA	NA	NA	589	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	0.095000	0.671642	
mm_120326.1	chr14	63143552	63143752	+	1	NA	NA	NA	21190	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.020000	0.522388	
mm_39364.1	chr5	9118741	9118941	+	1	NA	NA	NA	18104	NM_001081029	652925	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.005000	0.298507	-96(CTCCTTTAAAAC,-,0.00),-94(CCTTTAAAACGC,+,0.00)
mm_163705.1	chr13	107744154	107744354	+	1	NA	NA	NA	16833	NR_029759	723929		NR_029759	ENSMUSG00000065425	Mir325	Mirn325|mmu-mir-325	microRNA 325	ncRNA	0.020000	0.457711	
mm_132456.1	chr16	36071979	36072179	+	1	NA	NA	NA	419	NM_001159421	381045	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	0.075000	0.597015	
mm_69768.1	chr7	141010666	141010866	-	1	NA	NA	NA	-22	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.035000	0.527363	-32(CTTTTTAGATCC,+,0.00)
mm_2736.1	chr1	128244659	128244859	+	1	NA	NA	NA	578	NM_026390	67812	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0.065000	0.597015	-7(TTTTTTATAAGG,-,0.00)
mm_108956.1	chr12	102368259	102368459	+	1	NA	NA	NA	71454	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.025000	0.557214	
mm_84660.1	chr9	71724450	71724650	-	1	NA	NA	NA	47052	NM_026599	68178	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	0.035000	0.487562	
mm_162187.1	chrX	105499723	105499923	+	1	NA	NA	NA	51	NM_173436	245566	Mm.250428	NM_173436	ENSMUSG00000090132	Cypt2	Ckt1|Cypt2-ps	cysteine-rich perinuclear theca 2	protein-coding	0.030000	0.532338	
mm_60326.1	chr7	44236040	44236240	+	1	NA	NA	NA	-18	NR_029436	70004	Mm.158317	NR_029436	ENSMUSG00000038782	1700028J19Rik	-	RIKEN cDNA 1700028J19 gene	ncRNA	0.015000	0.572139	
mm_71688.1	chr8	61239293	61239493	+	1	NA	NA	NA	15222	NM_021506	59009	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	0.015000	0.378109	
mm_81415.1	chr9	109054847	109055047	+	1	NA	NA	NA	81	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.015000	0.512438	
mm_13819.1	chr2	119237395	119237595	+	1	NA	NA	NA	135	NM_016907	20732	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	0.135000	0.721393	
mm_131596.1	chr16	18877127	18877327	+	1	NA	NA	NA	477	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.155000	0.766169	
mm_50046.1	chr6	41151580	41151780	+	1	NA	NA	NA	-116171	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.447761	-67(TCTTATAAAGGA,+,0.00)
mm_114922.1	chr13	95325112	95325312	+	1	NA	NA	NA	387	NM_028106	72114	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	0.100000	0.582090	44(GTGTCTTTAAGG,-,0.00),46(GTCTTTAAGGGG,-,0.00),47(TCTTTAAGGGGG,+,0.00)
mm_98791.1	chr11	96931412	96931612	+	1	NA	NA	NA	2188	NM_146026	217138	Mm.342551	NM_146026	ENSMUSG00000047040	Prr15l	Atad4|BC022765|E230006A12Rik	proline rich 15-like	protein-coding	0.005000	0.487562	
mm_83621.1	chr9	48835815	48836015	-	1	NA	NA	NA	30	NM_001033324	235320	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0.080000	0.691542	
mm_90079.1	chr10	116508931	116509131	+	1	NA	NA	NA	-35508	NM_021452	58802	Mm.440652	NM_021452	ENSMUSG00000054934	Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding	0.010000	0.452736	
mm_173318.1	chrY	90736628	90736828	+	1	NA	NA	NA	18322	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.020000	0.502488	
mm_70762.1	chr8	21721925	21722125	+	1	NA	NA	NA	-12469	NM_001024225	503491	Mm.443396	NM_001024225	ENSMUSG00000064213	Defa24	Defcr24	defensin, alpha, 24	protein-coding	0.000000	0.532338	
mm_10478.1	chr2	14604102	14604302	+	1	NA	NA	NA	-104	NM_023116	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.100000	0.716418	
mm_76404.1	chr8	84846518	84846718	-	1	NA	NA	NA	313	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.080000	0.641791	
mm_163938.1	chr14	51145155	51145355	-	1	NA	NA	NA	1512	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.010000	0.412935	
mm_22809.1	chr3	27182880	27183080	+	1	NA	NA	NA	-24	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.090000	0.651741	
mm_152575.1	chr19	11600323	11600523	-	1	NA	NA	NA	4381	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.010000	0.378109	
mm_82822.1	chr9	31106038	31106238	-	1	NA	NA	NA	25661	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.050000	0.631841	
mm_24610.1	chr3	93447277	93447477	+	1	NA	NA	NA	5047	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.095000	0.626866	
mm_133804.1	chr16	95455041	95455241	+	1	NA	NA	NA	4207	NM_001302154	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	0.005000	0.492537	
mm_4035.1	chr1	165774208	165774408	+	1	NA	NA	NA	10528	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.045000	0.611940	
mm_76986.1	chr8	107048104	107048304	-	1	NA	NA	NA	410	NM_026513	68023	Mm.482335	NM_026513	ENSMUSG00000078931	Pdf	2610019N19Rik	peptide deformylase (mitochondrial)	protein-coding	0.095000	0.656716	
mm_123048.1	chr14	55591457	55591657	-	1	NA	NA	NA	-233	NM_194346	268749	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0.055000	0.542289	
mm_68785.1	chr7	123294429	123294629	-	1	NA	NA	NA	75386	NM_001122643	70497	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.025000	0.641791	
mm_170919.1	chr2	37261739	37261939	-	1	NA	NA	NA	-5112	NM_001081010	545417	Mm.379955	NM_001081010		Olfr367-ps	EG545417|MOR128-1|ORL1283|OTTMUSG00000012147|Olfr367	olfactory receptor 367, pseudogene	protein-coding	0.030000	0.532338	
mm_169695.1	chr15	74997998	74998198	+	1	NA	NA	NA	-67	NM_010738	110454	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	0.005000	0.472637	
mm_30007.1	chr3	135650237	135650437	-	1	NA	NA	NA	41210	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.020000	0.492537	
mm_89823.1	chr10	105573176	105573376	+	1	NA	NA	NA	1203	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.015000	0.318408	
mm_42545.1	chr5	116006733	116006933	+	1	NA	NA	NA	17595	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.010000	0.338308	
mm_21575.1	chr2	164237055	164237255	-	1	NA	NA	NA	1186	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.402985	
mm_10935.1	chr2	25468031	25468231	+	1	NA	NA	NA	1618	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.030000	0.592040	
mm_161832.1	chr17	83846502	83846702	-	1	NA	NA	NA	188	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.030000	0.542289	
mm_121311.1	chr14	106120809	106121009	+	1	NA	NA	NA	14711	NR_073203	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0.000000	0.293532	
mm_162119.1	chrX	57089271	57089471	+	1	NA	NA	NA	1265	NM_133251	170828	Mm.190616	NM_133251	ENSMUSG00000031131	Vgll1	Tondu	vestigial like family member 1	protein-coding	0.030000	0.532338	
mm_141680.1	chr17	33930645	33930845	-	1	NA	NA	NA	851	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.025000	0.587065	
mm_156468.1	chrX	143518488	143518688	+	1	NA	NA	NA	-3	NM_001195048	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding	0.045000	0.636816	
mm_9663.1	chr1	177796543	177796743	-	1	NA	NA	NA	-134	NM_007422	11566	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.135000	0.791045	
mm_102281.1	chr11	55395821	55396021	-	1	NA	NA	NA	24159	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.030000	0.572139	
mm_3655.1	chr1	153115820	153116020	+	1	NA	NA	NA	70527	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.025000	0.577114	
mm_109414.1	chr12	110483964	110484164	+	1	NA	NA	NA	-1675	NM_001081457	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.015000	0.527363	
mm_58419.1	chr7	3292908	3293108	+	1	NA	NA	NA	-20	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.045000	0.631841	
mm_7073.1	chr1	88205610	88205810	-	1	NA	NA	NA	38	NM_008299	15504	Mm.439983	NM_008299	ENSMUSG00000081984	Dnajb3	Hsj3|MSJ-1|Msj1	DnaJ heat shock protein family (Hsp40) member B3	protein-coding	0.125000	0.731343	
mm_90331.1	chr10	127078915	127079115	+	1	NA	NA	NA	108	NM_001033263	216439	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.075000	0.671642	
mm_168383.1	chr11	23306850	23307050	+	1	NA	NA	NA	55	NM_001190401	17847	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.115000	0.721393	
mm_112111.1	chr12	112795846	112796046	-	1	NA	NA	NA	-13029	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.040000	0.621891	
mm_166786.1	chr6	144902002	144902202	+	1	NA	NA	NA	146710	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.035000	0.507463	
mm_109924.1	chr12	8640576	8640776	-	1	NA	NA	NA	-33458	NM_001160221	80913	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.020000	0.293532	
mm_25864.1	chr3	129878538	129878738	+	1	NA	NA	NA	32	NR_104611	66350	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	0.175000	0.805970	
mm_170601.1	chr19	5802497	5802697	-	1	NA	NA	NA	75	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.050000	0.452736	
mm_151939.1	chr19	5800740	5800940	-	1	NA	NA	NA	1832	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.010000	0.442786	
mm_25770.1	chr3	126447621	126447821	+	1	NA	NA	NA	83869	NM_173451	271970	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	0.040000	0.547264	
mm_24926.1	chr3	96557859	96558059	+	1	NA	NA	NA	2	NM_023719	56338	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.060000	0.587065	-32(GGCTATATAAGC,-,0.00)
mm_149307.1	chr19	10739022	10739222	+	1	NA	NA	NA	-148	NM_007650	12507	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	0.015000	0.582090	
mm_98570.1	chr11	95414004	95414204	+	1	NA	NA	NA	21	NM_025287	20747	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0.105000	0.701493	
mm_150556.1	chr19	39330160	39330360	+	1	NA	NA	NA	43175	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.010000	0.368159	
mm_146290.1	chr18	78494790	78494990	+	1	NA	NA	NA	102060	NM_207651	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.020000	0.452736	
mm_59695.1	chr7	28540800	28541000	+	1	NA	NA	NA	15	NM_026716	68416	Mm.25210	NM_026716	ENSMUSG00000084174	Sycn	0910001K16Rik|1810038B08Rik|SYL	syncollin	protein-coding	0.015000	0.562189	
mm_138135.1	chr17	34196752	34196952	+	1	NA	NA	NA	-1343	NM_010724	16913	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	0.030000	0.517413	
mm_10622.1	chr2	19452353	19452553	+	1	NA	NA	NA	-5779	NR_131924	102637107	Mm.406835	NR_131924	ENSMUSG00000085388	Ptf1aos	Gm13336|OTTMUSG00000011493	pancreas specific transcription factor 1a, opposite strand	ncRNA	0.060000	0.636816	
mm_38729.1	chr4	145238567	145238767	-	1	NA	NA	NA	8203	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.020000	0.462687	
mm_151221.1	chr19	53677310	53677510	+	1	NA	NA	NA	104	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.110000	0.711443	
mm_140681.1	chr17	12992526	12992726	-	1	NA	NA	NA	-87	NM_175394	60532	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.130000	0.711443	
mm_88907.1	chr10	81179306	81179506	+	1	NA	NA	NA	445	NR_028549	100217454		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.020000	0.547264	
mm_63299.1	chr7	126823098	126823298	+	1	NA	NA	NA	-105	NM_029978	68952	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0.015000	0.597015	46(GTCTCTTTAAGG,-,0.00),48(CTCTTTAAGGGC,+,0.00),49(TCTTTAAGGGCC,+,0.00)
mm_45719.1	chr5	84417384	84417584	-	1	NA	NA	NA	-102	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.080000	0.646766	
mm_141001.1	chr17	24895373	24895573	-	1	NA	NA	NA	353	NM_023260	79044	Mm.328851	NM_023260	ENSMUSG00000038880	Mrps34	0610007F04Rik|5330430D13Rik|AV001970|Tce2	mitochondrial ribosomal protein S34	protein-coding	0.070000	0.611940	
mm_69224.1	chr7	127604360	127604560	-	1	NA	NA	NA	-15	NR_027915	68232	Mm.347960	NM_026628	ENSMUSG00000099579	1700120K04Rik	-	RIKEN cDNA 1700120K04 gene	ncRNA	0.015000	0.547264	
mm_93652.1	chr10	117379945	117380145	-	1	NA	NA	NA	-3072	NM_001310609	432508	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.015000	0.477612	
mm_149488.1	chr19	11813335	11813535	+	1	NA	NA	NA	5968	NM_001286543	20908	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.015000	0.462687	
mm_17540.1	chr2	29787152	29787352	-	1	NA	NA	NA	419	NM_001290496	227682	Mm.245739	NM_145520	ENSMUSG00000039826	Trub2	G430055L02Rik	TruB pseudouridine (psi) synthase family member 2	protein-coding	0.015000	0.363184	
mm_104619.1	chr11	97282212	97282412	-	1	NA	NA	NA	-1736	NM_008942	19155	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0.015000	0.482587	
mm_171334.1	chr3	99253308	99253508	+	1	NA	NA	NA	-352	NM_009323	21384	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0.020000	0.562189	
mm_44098.1	chr5	149288931	149289131	+	1	NA	NA	NA	24027	NM_009663	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.005000	0.502488	
mm_162515.1	chr1	156476115	156476315	-	1	NA	NA	NA	-1887	NM_009230	20652	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0.005000	0.537313	
mm_139846.1	chr17	69382945	69383145	+	1	NA	NA	NA	-933	NM_009547	22666	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0.080000	0.681592	
mm_30440.1	chr3	153650035	153650235	-	1	NA	NA	NA	74998	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.015000	0.432836	
mm_82737.1	chr9	25252306	25252506	-	1	NA	NA	NA	-33	NM_009859	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.125000	0.671642	
mm_7619.1	chr1	126830656	126830856	-	1	NA	NA	NA	-124	NM_176957	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.055000	0.507463	
mm_94882.1	chr11	26167615	26167815	+	1	NA	NA	NA	-34525	NR_105791	102466154		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0.035000	0.437811	
mm_83336.1	chr9	44267981	44268181	-	1	NA	NA	NA	106	NM_001163743	270151	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	0.110000	0.746269	
mm_88351.1	chr10	75893316	75893516	+	1	NA	NA	NA	18	NM_024440	70377	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	0.115000	0.706468	
mm_95864.1	chr11	58009480	58009680	+	1	NA	NA	NA	516	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.150000	0.766169	
mm_115783.1	chr13	19311599	19311799	-	1	NA	NA	NA	84114	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.313433	
mm_170359.1	chr1	85270051	85270251	-	1	NA	NA	NA	415	NM_175219	620078	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik|OTTMUSG00000029174	RIKEN cDNA C130026I21 gene	protein-coding	0.005000	0.552239	
mm_51637.1	chr6	85915640	85915840	+	1	NA	NA	NA	21	NM_001170488	69786	Mm.218434	NM_176842	ENSMUSG00000054226	Tprkb	0610033G21Rik|1810034M08Rik|Cgi-121|DRWMS1|mDRWMS1	Tp53rk binding protein	protein-coding	0.075000	0.587065	-86(CATTTTAGAGCC,+,0.00)
mm_88751.1	chr10	80299047	80299247	+	1	NA	NA	NA	-2673	NM_011789	23805	Mm.57247	NM_011789	ENSMUSG00000020135	Apc2	AI852447|APCL|R75424	adenomatosis polyposis coli 2	protein-coding	0.060000	0.686567	
mm_104795.1	chr11	98772026	98772226	-	1	NA	NA	NA	3251	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.015000	0.527363	
mm_50135.1	chr6	41542649	41542849	+	1	NA	NA	NA	20973	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.020000	0.512438	
mm_118793.1	chr14	24216167	24216367	+	1	NA	NA	NA	29653	NM_001163513	71228	Mm.68971	NM_027726	ENSMUSG00000021782	Dlg5	4933429D20Rik|T25557|mKIAA0583	discs, large homolog 5 (Drosophila)	protein-coding	0.010000	0.502488	
mm_150060.1	chr19	29384007	29384207	+	1	NA	NA	NA	16669	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.025000	0.442786	
mm_141314.1	chr17	28358640	28358840	-	1	NA	NA	NA	6403	NM_021478	22157	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.025000	0.616915	
mm_32407.1	chr4	106947142	106947342	+	1	NA	NA	NA	35772	NM_023672	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.010000	0.552239	
mm_10955.1	chr2	25657854	25658054	+	1	NA	NA	NA	2	NM_001042630	13863	Mm.12867	NM_007947	ENSMUSG00000026937	Lcn5	E-RABP|Erabp|MEP10	lipocalin 5	protein-coding	0.000000	0.522388	
mm_69863.1	chr7	141437741	141437941	-	1	NA	NA	NA	33	NM_026646	68267	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0.020000	0.542289	
mm_67276.1	chr7	78192471	78192671	-	1	NA	NA	NA	385267	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	0.010000	0.512438	30(GCATTTATACTC,+,0.00)
mm_20636.1	chr2	132019372	132019572	-	1	NA	NA	NA	10516	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.010000	0.522388	
mm_12805.1	chr2	80292698	80292898	+	1	NA	NA	NA	328	NM_177256	320769	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	0.055000	0.462687	
mm_25851.1	chr3	129533555	129533755	+	1	NA	NA	NA	1269	NM_130450	170439	Mm.314113	NM_130450	ENSMUSG00000041220	Elovl6	C77826|FAE|LCE	ELOVL family member 6, elongation of long chain fatty acids (yeast)	protein-coding	0.070000	0.611940	
mm_2984.1	chr1	133131276	133131476	+	1	NA	NA	NA	210	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.135000	0.691542	
mm_39896.1	chr5	31202386	31202586	+	1	NA	NA	NA	-183	NM_175311	101023	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	0.040000	0.597015	
mm_134299.1	chr16	15564613	15564813	-	1	NA	NA	NA	29805	NM_001159351	70620	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	0.010000	0.388060	
mm_40263.1	chr5	38277355	38277555	+	1	NA	NA	NA	51	NM_172709	21906	Mm.204765	NM_172709	ENSMUSG00000051596	Otop1	A530025J20Rik|Otp1|tlt	otopetrin 1	protein-coding	0.095000	0.726368	
mm_101349.1	chr11	23665800	23666000	-	1	NA	NA	NA	35	NM_023651	72129	Mm.29536	NM_023651	ENSMUSG00000020283	Pex13	2610008O20Rik	peroxisomal biogenesis factor 13	protein-coding	0.100000	0.711443	
mm_23616.1	chr3	65659131	65659331	+	1	NA	NA	NA	-57	NR_106200	102465905		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	0.050000	0.626866	
mm_109311.1	chr12	109560850	109561050	+	1	NA	NA	NA	-2742	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.035000	0.427861	
mm_70816.1	chr8	23095532	23095732	+	1	NA	NA	NA	37373	NR_102385	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.025000	0.368159	
mm_52067.1	chr6	97624905	97625105	+	1	NA	NA	NA	-7348	NM_145148	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.005000	0.497512	
mm_142410.1	chr17	45488583	45488783	-	1	NA	NA	NA	-13745	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.035000	0.532338	
mm_7011.1	chr1	86503310	86503510	-	1	NA	NA	NA	-23326	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.045000	0.641791	
mm_39207.1	chr4	156050402	156050602	-	1	NA	NA	NA	315	NM_029264	330010	Mm.440232	NM_029264	ENSMUSG00000029074	Ttll10	4833412E22Rik|4930595O22Rik|AU022799|BC042775|Ttll5	tubulin tyrosine ligase-like family, member 10	protein-coding	0.020000	0.587065	
mm_63040.1	chr7	121083324	121083524	+	1	NA	NA	NA	-14	NM_139310	246190	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0.025000	0.616915	
mm_36065.1	chr4	57916195	57916395	-	1	NA	NA	NA	-31	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.025000	0.497512	
mm_44484.1	chr5	23518641	23518841	-	1	NA	NA	NA	84312	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.015000	0.472637	
mm_88771.1	chr10	80335978	80336178	+	1	NA	NA	NA	5933	NM_139292	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.025000	0.542289	
mm_110406.1	chr12	45074274	45074474	-	1	NA	NA	NA	109	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.130000	0.741294	
mm_84482.1	chr9	66845223	66845423	-	1	NA	NA	NA	-10617	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.000000	0.407960	
mm_41842.1	chr5	104434316	104434516	+	1	NA	NA	NA	-695	NM_001204201	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.020000	0.462687	
mm_83552.1	chr9	46242432	46242632	-	1	NA	NA	NA	1688	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.030000	0.542289	
mm_119742.1	chr14	54122073	54122273	+	1	NA	NA	NA	131756	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.512438	
mm_111050.1	chr12	80109456	80109656	-	1	NA	NA	NA	3457	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.005000	0.557214	
mm_51144.1	chr6	70532843	70533043	+	1	NA	NA	NA	259232	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.368159	
mm_171350.1	chr4	109117921	109118121	-	1	NA	NA	NA	15	NM_173350	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.100000	0.766169	
mm_75737.1	chr8	69716320	69716520	-	1	NA	NA	NA	66	NM_181274	66869	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	0.050000	0.522388	
mm_46339.1	chr5	101851430	101851630	-	1	NA	NA	NA	86400	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.000000	0.502488	
mm_9303.1	chr1	171639072	171639272	-	1	NA	NA	NA	2728	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.025000	0.522388	
mm_157530.1	chrX	51017952	51018152	-	1	NA	NA	NA	-34	NM_172413	72065	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	0.065000	0.671642	
mm_168111.1	chr10	14746397	14746597	-	1	NA	NA	NA	-13792	NM_008703	18101	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.050000	0.512438	51(CTCTCTATGAGG,-,0.00)
mm_119316.1	chr14	36969925	36970125	+	1	NA	NA	NA	-1261	NM_027045	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.010000	0.407960	
mm_132306.1	chr16	33684366	33684566	+	1	NA	NA	NA	0	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629|OTTMUSG00000027315	heart development protein with EGF-like domains 1	protein-coding	0.135000	0.786070	
mm_5109.1	chr1	6214342	6214542	-	1	NA	NA	NA	-220	NM_009826	12421	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	0.050000	0.636816	
mm_161286.1	chr14	26066872	26067072	-	1	NA	NA	NA	20	NM_001270499	100039192	Mm.33344	NM_001270498	ENSMUSG00000072680	Tmem254c	ENSMUSG00000072676|Gm10395	transmembrane protein 254c	protein-coding	0.085000	0.646766	
mm_98759.1	chr11	96546929	96547129	+	1	NA	NA	NA	82438	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.030000	0.407960	-73(TGCTTTATAAGA,-,0.00)
mm_94423.1	chr11	5955688	5955888	+	1	NA	NA	NA	30	NM_019661	56418	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0.120000	0.721393	
mm_146076.1	chr18	70568821	70569021	+	1	NA	NA	NA	629	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.060000	0.641791	
mm_80743.1	chr9	94770110	94770310	+	1	NA	NA	NA	18381	NR_106116	102465763		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.005000	0.393035	
mm_51429.1	chr6	78466168	78466368	+	1	NA	NA	NA	2606	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.000000	0.373134	
mm_117513.1	chr13	80885421	80885621	-	1	NA	NA	NA	2099	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.080000	0.611940	
mm_74243.1	chr8	124792966	124793166	+	1	NA	NA	NA	47	NM_198632	330863	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	0.130000	0.766169	
mm_2388.1	chr1	93507788	93507988	+	1	NA	NA	NA	-4216	NM_145519	227377	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	0.000000	0.318408	
mm_61956.1	chr7	90208676	90208876	+	1	NA	NA	NA	56656	NM_029256	75338	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.010000	0.358209	-1(GGCCTTAAGAAG,-,0.00)
mm_114578.1	chr13	75644765	75644965	+	1	NA	NA	NA	-181	NR_030451	751556		NR_030451	ENSMUSG00000076236	Mir682	Mirn682|mir-682|mmu-mir-682	microRNA 682	ncRNA	0.050000	0.472637	
mm_48637.1	chr5	145191441	145191641	-	1	NA	NA	NA	51	NM_020582	57423	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	0.060000	0.616915	
mm_68611.1	chr7	116402903	116403103	-	1	NA	NA	NA	40455	NM_011083	18704	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	protein-coding	0.005000	0.333333	
mm_171307.1	chr3	94093499	94093699	-	1	NA	NA	NA	-20955	NM_001163731	100042761	Mm.484910	NM_001163731	ENSMUSG00000095251	Gm10697	ENSMUSG00000074425	predicted gene 10697	protein-coding	0.005000	0.442786	-36(GCCTATATAAAC,-,0.00)
mm_12787.1	chr2	79587696	79587896	+	1	NA	NA	NA	-47629	NM_080558	70599	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0.020000	0.457711	
mm_121481.1	chr14	121035681	121035881	+	1	NA	NA	NA	207	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.185000	0.830846	
mm_69045.1	chr7	126809083	126809283	-	1	NA	NA	NA	-7702	NM_026884	68952	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0.090000	0.631841	
mm_58488.1	chr7	3645438	3645638	+	1	NA	NA	NA	269	NM_146176	232791	Mm.358731	NM_146176	ENSMUSG00000035632	Cnot3	A930039N10Rik	CCR4-NOT transcription complex, subunit 3	protein-coding	0.120000	0.656716	
mm_24552.1	chr3	93442311	93442511	+	1	NA	NA	NA	81	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.005000	0.378109	
mm_109057.1	chr12	104340512	104340712	+	1	NA	NA	NA	2126	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.005000	0.457711	
mm_129938.1	chr15	84855950	84856150	-	1	NA	NA	NA	79	NM_001081166	271305	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.155000	0.766169	
mm_130449.1	chr15	98534168	98534368	-	1	NA	NA	NA	1	NM_001289438	69612	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	0.095000	0.646766	
mm_131061.1	chr16	4558025	4558225	+	1	NA	NA	NA	1595	NM_031182	83383	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.050000	0.631841	
mm_71221.1	chr8	40899065	40899265	+	1	NA	NA	NA	-27068	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.065000	0.582090	
mm_10272.1	chr2	9882049	9882249	+	1	NA	NA	NA	903	NR_024257	381347	Mm.441450	NR_024257		4930412O13Rik	ENSMUSG00000075535|Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.020000	0.532338	
mm_24327.1	chr3	89459073	89459273	+	1	NA	NA	NA	55	NM_026784	68603	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0.060000	0.621891	
mm_155084.1	chrX	48106690	48106890	+	1	NA	NA	NA	-1935	NM_001289729	170745	Mm.129279	NM_133213	ENSMUSG00000037005	Xpnpep2	9030008G12Rik|mAPP	X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	protein-coding	0.005000	0.487562	33(TGCTTTATAAGG,-,0.00),35(CTTTATAAGGAC,+,0.00)
mm_58436.1	chr7	3297723	3297923	+	1	NA	NA	NA	4795	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.010000	0.437811	
mm_60673.1	chr7	45061722	45061922	+	1	NA	NA	NA	-170	NM_022999	65116	Mm.379098	NM_022999	ENSMUSG00000007837	Prrg2	1600014G02Rik|2510041M06Rik|N4WBP1	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	protein-coding	0.030000	0.552239	
mm_43584.1	chr5	137746978	137747178	+	1	NA	NA	NA	1109	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.035000	0.646766	
mm_76844.1	chr8	105289781	105289981	-	1	NA	NA	NA	-353	NM_028888	74356	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0.040000	0.512438	
mm_159696.1	chr5	24526532	24526732	-	1	NA	NA	NA	216	NM_015739	231044	Mm.246596	NM_015739	ENSMUSG00000067724	Gbx1	Gbx-1	gastrulation brain homeobox 1	protein-coding	0.200000	0.850746	
mm_42453.1	chr5	115435036	115435236	+	1	NA	NA	NA	5451	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.015000	0.562189	
mm_166449.1	chr5	137268562	137268762	-	1	NA	NA	NA	-19592	NM_009599	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.040000	0.611940	
mm_169247.1	chr13	74865011	74865211	+	1	NA	NA	NA	-56351	NM_001301153	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.015000	0.477612	
mm_58521.1	chr7	4141999	4142199	+	1	NA	NA	NA	5043	NM_172736	232798	Mm.22831	NM_172736	ENSMUSG00000035545	Leng8	AW049671	leukocyte receptor cluster (LRC) member 8	protein-coding	0.010000	0.592040	
mm_21962.1	chr2	167240456	167240656	-	1	NA	NA	NA	-19	NM_008968	19223	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.050000	0.671642	
mm_67249.1	chr7	75372042	75372242	-	1	NA	NA	NA	-62880	NM_153579	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.015000	0.552239	
mm_20609.1	chr2	131562664	131562864	-	1	NA	NA	NA	-479	NM_013460	11550	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	0.050000	0.636816	
mm_133813.1	chr16	95703622	95703822	+	1	NA	NA	NA	1315	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.000000	0.308458	
mm_72210.1	chr8	72646409	72646609	+	1	NA	NA	NA	-202	NM_176940	319555	Mm.212927	NM_176940	ENSMUSG00000048148	Nwd1	A230063L24Rik	NACHT and WD repeat domain containing 1	protein-coding	0.020000	0.592040	
mm_150884.1	chr19	45149756	45149956	+	1	NA	NA	NA	-859	NM_021901	21908	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	0.035000	0.517413	-54(GCCTTAAGACCC,+,0.00),-26(GATTCTAAAAGC,-,0.00)
mm_92676.1	chr10	80561443	80561643	-	1	NA	NA	NA	17	NM_025852	66932	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0.125000	0.716418	
mm_134929.1	chr16	30933403	30933603	-	1	NA	NA	NA	147929	NM_198626	268880	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.025000	0.557214	
mm_77076.1	chr8	110168113	110168313	-	1	NA	NA	NA	-7	NM_007586	12308	Mm.2755	NM_007586	ENSMUSG00000003657	Calb2	CR	calbindin 2	protein-coding	0.125000	0.716418	-34(CTGCATATAAAG,-,0.00),-32(GCATATAAAGGC,+,0.00),-32(GCATATAAAGGC,-,0.00)
mm_48469.1	chr5	140830361	140830561	-	1	NA	NA	NA	-30	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.135000	0.736318	
mm_141180.1	chr17	26886142	26886342	-	1	NA	NA	NA	-30849	NM_053173	16580	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0.075000	0.626866	
mm_165340.1	chr2	118007941	118008141	-	1	NA	NA	NA	103161	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA	0.020000	0.572139	
mm_101072.1	chr11	11519354	11519554	-	1	NA	NA	NA	30188	NM_028669	73862	Mm.159077	NM_028669	ENSMUSG00000020191	4930415F15Rik	-	RIKEN cDNA 4930415F15 gene	protein-coding	0.005000	0.388060	
mm_82081.1	chr9	123021026	123021226	+	1	NA	NA	NA	-200	NM_025339	66079	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	0.080000	0.611940	
mm_19174.1	chr2	84356304	84356504	-	1	NA	NA	NA	68862	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.005000	0.472637	
mm_111598.1	chr12	101976782	101976982	-	1	NA	NA	NA	908	NM_016856	51786	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.045000	0.477612	
mm_143121.1	chr17	57210136	57210336	-	1	NA	NA	NA	6992	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.030000	0.557214	
mm_156616.1	chrX	153500204	153500404	+	1	NA	NA	NA	2072	NM_018798	54609	Mm.430772	NM_018798	ENSMUSG00000050148	Ubqln2	Chap1|Dsk2|HRIHFB2157|Plic-2|Plic2	ubiquilin 2	protein-coding	0.045000	0.507463	
mm_29943.1	chr3	132904824	132905024	-	1	NA	NA	NA	-26328	NR_102298	101243624	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	0.005000	0.487562	
mm_62932.1	chr7	118712444	118712644	+	1	NA	NA	NA	-67	NM_182995	101565	Mm.23279	NM_182995	ENSMUSG00000033904	Ccp110	6330503K22Rik|AA415922|AI427129|AW557948|CP110	centriolar coiled coil protein 110	protein-coding	0.070000	0.626866	
mm_51406.1	chr6	78373299	78373499	+	1	NA	NA	NA	2514	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.000000	0.333333	
mm_134184.1	chr16	10963197	10963397	-	1	NA	NA	NA	29824	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.020000	0.572139	
mm_80090.1	chr9	70220940	70221140	+	1	NA	NA	NA	13690	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.010000	0.517413	83(TTGTTTAAAAAG,-,0.00)
mm_136009.1	chr16	75905415	75905615	-	1	NA	NA	NA	3751	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.005000	0.298507	
mm_2845.1	chr1	131638362	131638562	+	1	NA	NA	NA	148	NM_007799	13034	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	0.035000	0.447761	
mm_80016.1	chr9	67862194	67862394	+	1	NA	NA	NA	21898	NM_177184	320528	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.005000	0.353234	
mm_40129.1	chr5	35041467	35041667	+	1	NA	NA	NA	58	NM_019447	54426	Mm.27369	NM_019447	ENSMUSG00000029102	Hgfac	HGFA	hepatocyte growth factor activator	protein-coding	0.015000	0.597015	
mm_22193.1	chr2	173276384	173276584	-	1	NA	NA	NA	49	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.170000	0.786070	
mm_154298.1	chr19	61224645	61224845	-	1	NA	NA	NA	3673	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.035000	0.547264	
mm_149668.1	chr19	18776077	18776277	+	1	NA	NA	NA	26194	NM_153417	225997	Mm.215171	NM_153417	ENSMUSG00000024727	Trpm6	CHAK2|TRPM6/CHAK2	transient receptor potential cation channel, subfamily M, member 6	protein-coding	0.015000	0.512438	
mm_121296.1	chr14	105499923	105500123	+	1	NA	NA	NA	1235	NR_045921	74864	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	0.015000	0.457711	
mm_125569.1	chr15	59314959	59315159	+	1	NA	NA	NA	-33	NM_009270	20775	Mm.296169	NM_009270	ENSMUSG00000022351	Sqle	AI323792	squalene epoxidase	protein-coding	0.140000	0.771144	
mm_31250.1	chr4	44981325	44981525	+	1	NA	NA	NA	31	NM_001312880	76238	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0.105000	0.701493	
mm_53363.1	chr6	129377329	129377529	+	1	NA	NA	NA	8074	NM_027709	71183	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	0.010000	0.462687	
mm_7215.1	chr1	93160140	93160340	-	1	NA	NA	NA	630	NM_001159940	71874	Mm.158766	NM_172411	ENSMUSG00000034159	2310007B03Rik	-	RIKEN cDNA 2310007B03 gene	protein-coding	0.025000	0.611940	
mm_29034.1	chr3	102167583	102167783	-	1	NA	NA	NA	37010	NM_177545	229658	Mm.118004	NM_177545	ENSMUSG00000027860	Vangl1	Kitenin|Lpp2|Stb2|Stbm	vang-like 1 (van gogh, Drosophila)	protein-coding	0.000000	0.502488	
mm_33100.1	chr4	124701302	124701502	+	1	NA	NA	NA	703	NM_010213	14201	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	0.025000	0.527363	
mm_120836.1	chr14	75177757	75177957	+	1	NA	NA	NA	41432	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.000000	0.368159	
mm_11259.1	chr2	29963326	29963526	+	1	NA	NA	NA	-2134	NM_001177668	20740	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	0.020000	0.462687	
mm_53217.1	chr6	126853047	126853247	+	1	NA	NA	NA	49	NM_009650	11642	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	0.000000	0.457711	48(GACTTTAAAAGT,-,0.00)
mm_68252.1	chr7	105574227	105574427	-	1	NA	NA	NA	-5009	NM_001253887	11785	Mm.38469	NM_009685	ENSMUSG00000037032	Apbb1	Fe65|Rir	amyloid beta (A4) precursor protein-binding, family B, member 1	protein-coding	0.030000	0.577114	
mm_59001.1	chr7	19178121	19178321	+	1	NA	NA	NA	1800	NM_001347582	72205	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0.060000	0.636816	
mm_88632.1	chr10	79887575	79887775	+	1	NA	NA	NA	1363	NM_015779	50701	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0.040000	0.597015	
mm_114114.1	chr13	54949335	54949535	+	1	NA	NA	NA	3	NM_153131	107448	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	0.185000	0.845771	
mm_151304.1	chr19	55741961	55742161	+	1	NA	NA	NA	251	NM_001142923	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.025000	0.422886	
mm_110694.1	chr12	69197008	69197208	-	1	NA	NA	NA	-103	NR_033222	414085	Mm.256223	NR_033222	ENSMUSG00000097061	9330151L19Rik	-	RIKEN cDNA 9330151L19 gene	ncRNA	0.120000	0.691542	
mm_104811.1	chr11	98939564	98939764	-	1	NA	NA	NA	-47	NM_001177303	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.015000	0.572139	
mm_42082.1	chr5	110176757	110176957	+	1	NA	NA	NA	156	NM_008146	269682	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	0.080000	0.641791	
mm_8914.1	chr1	163313377	163313577	-	1	NA	NA	NA	173	NM_011127	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.025000	0.552239	
mm_171880.1	chr5	32854165	32854365	-	1	NA	NA	NA	-35	NM_194340	215476	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	0.110000	0.716418	
mm_31379.1	chr4	47474621	47474821	+	1	NA	NA	NA	60	NM_024171	66212	Mm.20188	NM_024171	ENSMUSG00000053317	Sec61b	1190006C12Rik|AI326121|AW122942	Sec61 beta subunit	protein-coding	0.055000	0.616915	
mm_67913.1	chr7	99823304	99823504	-	1	NA	NA	NA	5013	NM_016720	50877	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	0.020000	0.597015	
mm_61208.1	chr7	64185314	64185514	+	1	NA	NA	NA	-45	NM_018752	17364	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.020000	0.587065	
mm_63466.1	chr7	127573629	127573829	+	1	NA	NA	NA	381	NM_026888	68961	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	0.040000	0.696517	
mm_44034.1	chr5	147439236	147439436	+	1	NA	NA	NA	8756	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.015000	0.447761	
mm_137231.1	chr17	24398509	24398709	+	1	NA	NA	NA	15904	NR_033554	654822	Mm.489806	NM_001039561	ENSMUSG00000073437	D330041H03Rik	-	RIKEN cDNA D330041H03 gene	ncRNA	0.015000	0.542289	
mm_73310.1	chr8	105171460	105171660	+	1	NA	NA	NA	886	NM_001161458	12400	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0.150000	0.726368	
mm_66105.1	chr7	31041391	31041591	-	1	NA	NA	NA	348	NM_001111073	18301	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	0.030000	0.567164	
mm_23219.1	chr3	47704471	47704671	+	1	NA	NA	NA	322188	NR_040408	666202	Mm.465057	NR_040408	ENSMUSG00000103257	Gm7977	EG666202	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene	pseudo	0.000000	0.378109	72(CTTCTTAAAGAC,+,0.00)
mm_127400.1	chr15	101174022	101174222	+	1	NA	NA	NA	-3	NM_007395	11479	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0.155000	0.791045	
mm_160638.1	chr9	108494498	108494698	+	1	NA	NA	NA	3922	NM_027804	71472	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	0.025000	0.577114	
mm_40368.1	chr5	50821338	50821538	+	1	NA	NA	NA	568676	NR_106197	102465903		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA	0.000000	0.407960	
mm_165455.1	chr2	157914577	157914777	+	1	NA	NA	NA	24	NM_198627	277432	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0.160000	0.810945	
mm_97805.1	chr11	82960801	82961001	+	1	NA	NA	NA	-220	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.030000	0.432836	
mm_92644.1	chr10	80348915	80349115	-	1	NA	NA	NA	-567	NR_104340	66548	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0.060000	0.661692	
mm_49484.1	chr6	29535278	29535478	+	1	NA	NA	NA	6096	NM_001252382	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.005000	0.616915	
mm_30695.1	chr4	11604386	11604586	+	1	NA	NA	NA	24824	NM_001256142	100503583	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	0.020000	0.457711	
mm_157948.1	chrX	86746465	86746665	-	1	NA	NA	NA	-391571	NR_036689	245502	Mm.490821	NR_036689		Gm41	-	melanoma antigen, family B, 4 pseudogene	pseudo	0.000000	0.462687	
mm_143946.1	chr17	86753335	86753535	-	1	NA	NA	NA	-429	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.070000	0.621891	
mm_59072.1	chr7	19508666	19508866	+	1	NA	NA	NA	96	NM_025960	67091	Mm.44213	NM_025960	ENSMUSG00000002043	Trappc6a	1810073E21Rik|4930519D19Rik|AI480686|TRS33|mhyp	trafficking protein particle complex 6A	protein-coding	0.110000	0.691542	
mm_114858.1	chr13	93304848	93305048	+	1	NA	NA	NA	1191	NM_011982	26556	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0.065000	0.512438	
mm_34134.1	chr4	139290952	139291152	+	1	NA	NA	NA	19648	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.045000	0.522388	
mm_6234.1	chr1	66944911	66945111	-	1	NA	NA	NA	45	NM_021285	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.030000	0.487562	
mm_129012.1	chr15	74920690	74920890	-	1	NA	NA	NA	-34261	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.010000	0.412935	-5(CCATTAATGGCA,+,0.00)
mm_83396.1	chr9	44721215	44721415	-	1	NA	NA	NA	13883	NM_153537	102693	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.110000	0.746269	
mm_130088.1	chr15	89379154	89379354	-	1	NA	NA	NA	0	NM_001013022	70113	Mm.247273	NM_001013022	ENSMUSG00000047394	Odf3b	2010001J22Rik	outer dense fiber of sperm tails 3B	protein-coding	0.045000	0.592040	
mm_66925.1	chr7	61311585	61311785	-	1	NA	NA	NA	303642	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.015000	0.373134	
mm_3864.1	chr1	160988837	160989037	+	1	NA	NA	NA	10331	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.025000	0.562189	
mm_89709.1	chr10	97692957	97693157	+	1	NA	NA	NA	-2	NM_025724	66716	Mm.56430	NM_025724	ENSMUSG00000047025	Ccer1	4921510H08Rik|AV259683	coiled-coil glutamate-rich protein 1	protein-coding	0.065000	0.661692	-31(GTATTTAAAGGC,+,0.00)
mm_4388.1	chr1	172312308	172312508	+	1	NA	NA	NA	41	NM_080419	140559	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	0.095000	0.766169	
mm_22409.1	chr2	181314164	181314364	-	1	NA	NA	NA	236	NM_009133	20262	Mm.2319	NM_009133	ENSMUSG00000027581	Stmn3	9330161A03Rik|AI604839|R75323|Sclip	stathmin-like 3	protein-coding	0.065000	0.691542	
mm_141267.1	chr17	27635153	27635353	-	1	NA	NA	NA	-11	NM_025963	67097	Mm.275810	NM_025963	ENSMUSG00000052146	Rps10	2210402A09Rik	ribosomal protein S10	protein-coding	0.130000	0.756219	
mm_126895.1	chr15	89499820	89500020	+	1	NA	NA	NA	63	NM_021423	58234	Mm.146855	NM_021423	ENSMUSG00000022623	Shank3	AI841104|SHANK3c-3|SHANK3c-4|Shank3b	SH3/ankyrin domain gene 3	protein-coding	0.145000	0.766169	
mm_57539.1	chr6	126644653	126644853	-	1	NA	NA	NA	1048	NM_010595	16485	Mm.40424	NM_010595	ENSMUSG00000047976	Kcna1	AI840627|Kca1-1|Kv1.1|MBK1|Mk-1|Shak|mceph	potassium voltage-gated channel, shaker-related subfamily, member 1	protein-coding	0.100000	0.651741	
mm_26890.1	chr3	18243219	18243419	-	1	NA	NA	NA	19	NM_007825	13123	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	0.060000	0.651741	
mm_101173.1	chr11	16985267	16985467	-	1	NA	NA	NA	23351	NM_019549	56193	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.010000	0.378109	
mm_137106.1	chr17	21733638	21733838	+	1	NA	NA	NA	14	NM_001164676	381067	Mm.482723	NM_001164676	ENSMUSG00000061544	Zfp229	-	zinc finger protein 229	protein-coding	0.030000	0.532338	
mm_110487.1	chr12	51971208	51971408	-	1	NA	NA	NA	13	NM_177171	320487	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	0.130000	0.786070	
mm_5773.1	chr1	51475242	51475442	-	1	NA	NA	NA	3057	NM_028696	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.000000	0.437811	
mm_56898.1	chr6	119137221	119137421	-	1	NA	NA	NA	-28826	NM_001256002	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.005000	0.432836	-100(ATTTTTAAAAGG,-,0.00)
mm_107623.1	chr12	51593236	51593436	+	1	NA	NA	NA	-5	NM_007728	12810	Mm.21325	NM_007728	ENSMUSG00000020953	Coch	AW122937|Coch-5B2|D12H14S564E	cochlin	protein-coding	0.110000	0.751244	5(GTCTTTATAGCG,+,0.00)
mm_91628.1	chr10	41933665	41933865	-	1	NA	NA	NA	46326	NM_001013370	140742	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.015000	0.562189	
mm_98857.1	chr11	97663276	97663476	+	1	NA	NA	NA	-36	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.135000	0.751244	
mm_156623.1	chrX	155154769	155154969	+	1	NA	NA	NA	-7020	NM_001081671	73347	Mm.63848	NM_001081671	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	0.015000	0.388060	
mm_116482.1	chr13	43788985	43789185	-	1	NA	NA	NA	3973	NM_001289915	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.020000	0.497512	
mm_97058.1	chr11	72689889	72690089	+	1	NA	NA	NA	-13	NM_009671	11736	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	0.070000	0.597015	
mm_116989.1	chr13	56482075	56482275	-	1	NA	NA	NA	71	NM_008373	16198	Mm.3006	NM_008373	ENSMUSG00000021538	Il9	Il-9|P40	interleukin 9	protein-coding	0.005000	0.497512	
mm_93686.1	chr10	117815576	117815776	-	1	NA	NA	NA	-22971	NM_134010	103468	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.015000	0.417910	
mm_51403.1	chr6	78372781	78372981	+	1	NA	NA	NA	1996	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.010000	0.477612	
mm_25655.1	chr3	121531519	121531719	+	1	NA	NA	NA	725	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.020000	0.427861	
mm_98938.1	chr11	98371702	98371902	+	1	NA	NA	NA	-12009	NM_011540	21393	Mm.10762	NM_011540	ENSMUSG00000007877	Tcap	AI503981|AJ223855	titin-cap	protein-coding	0.010000	0.582090	
mm_49449.1	chr6	29348064	29348264	+	1	NA	NA	NA	58	NM_184053	12321	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	0.080000	0.651741	
mm_63103.1	chr7	122628719	122628919	+	1	NA	NA	NA	-42925	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.005000	0.462687	
mm_94278.1	chr11	3963858	3964058	+	1	NA	NA	NA	-17	NM_022889	64934	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	0.035000	0.527363	
mm_62559.1	chr7	103813981	103814181	+	1	NA	NA	NA	-158	NM_008220	101488143	Mm.467412	NM_008220	ENSMUSG00000073940	Hbb-bt	Beta-t	hemoglobin, beta adult t chain	protein-coding	0.000000	0.442786	
mm_128752.1	chr15	64920890	64921090	-	1	NA	NA	NA	1306	NM_001331075	11514	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	0.135000	0.721393	
mm_106703.1	chr12	3732088	3732288	+	1	NA	NA	NA	-74792	NM_007872	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.015000	0.378109	55(AGCCATAAAAGC,-,0.00)
mm_40728.1	chr5	66053031	66053231	+	1	NA	NA	NA	45048	NM_139065	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.040000	0.462687	
mm_87019.1	chr10	28013397	28013597	+	1	NA	NA	NA	-61323	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0.000000	0.477612	
mm_43984.1	chr5	146384871	146385071	+	1	NA	NA	NA	-35	NM_145155	245880	Mm.472750	NM_145155	ENSMUSG00000029636	Wasf3	Scar3|Wave3	WAS protein family, member 3	protein-coding	0.015000	0.532338	
mm_127841.1	chr15	6874204	6874404	-	1	NA	NA	NA	9	NM_011019	18414	Mm.10760	NM_011019	ENSMUSG00000022146	Osmr	OSMRB	oncostatin M receptor	protein-coding	0.100000	0.686567	
mm_63381.1	chr7	127213040	127213240	+	1	NA	NA	NA	1532	NM_016754	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.015000	0.552239	
mm_12294.1	chr2	69057682	69057882	+	1	NA	NA	NA	-78018	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.015000	0.353234	
mm_54890.1	chr6	44083237	44083437	-	1	NA	NA	NA	-417059	NM_013861	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.010000	0.482587	
mm_24704.1	chr3	95131338	95131538	+	1	NA	NA	NA	2574	NM_027013	69269	Mm.182944	NM_027013	ENSMUSG00000092607	Scnm1	3110001I17Rik|Scnm1-ps	sodium channel modifier 1	protein-coding	0.005000	0.472637	
mm_166931.1	chr7	34881487	34881687	-	1	NA	NA	NA	-30820	NM_008820	18624	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0.005000	0.447761	-78(GCCTTTAGAGTA,+,0.00)
mm_69000.1	chr7	126695621	126695821	-	1	NA	NA	NA	62	NM_029420	75764	Mm.280573	NM_029420	ENSMUSG00000059772	Slx1b	1110030E23Rik|2410170E21Rik|4833422P03Rik|AI853643|Giyd1|Giyd2	SLX1 structure-specific endonuclease subunit homolog B (S. cerevisiae)	protein-coding	0.045000	0.616915	
mm_92308.1	chr10	75185079	75185279	-	1	NA	NA	NA	-26894	NM_153406	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.005000	0.527363	
mm_130799.1	chr15	101694209	101694409	-	1	NA	NA	NA	-4	NM_008476	16687	Mm.302399	NM_008476	ENSMUSG00000058354	Krt6a	2310016L08Rik|Krt2-6a|Krt2-6c|MK6a|mK6[a]	keratin 6A	protein-coding	0.010000	0.522388	-34(CCATATATAAGC,+,0.00),-34(CCATATATAAGC,-,0.00)
mm_143603.1	chr17	78417544	78417744	-	1	NA	NA	NA	508	NM_001285949	225020	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.055000	0.631841	-34(GAGTTTAAATGC,-,0.00)
mm_108763.1	chr12	89450089	89450289	+	1	NA	NA	NA	-362294	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.000000	0.467662	
mm_28627.1	chr3	95133903	95134103	-	1	NA	NA	NA	9	NM_027013	69269	Mm.182944	NM_027013	ENSMUSG00000092607	Scnm1	3110001I17Rik|Scnm1-ps	sodium channel modifier 1	protein-coding	0.075000	0.537313	
mm_113194.1	chr13	24943117	24943317	+	1	NA	NA	NA	65	NM_008156	14756	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0.025000	0.482587	
mm_92816.1	chr10	81430903	81431103	-	1	NA	NA	NA	-3830	NM_026756	18029	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.165000	0.751244	
mm_76915.1	chr8	105932921	105933121	-	1	NA	NA	NA	841	NM_023182	109660	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.030000	0.537313	
mm_60220.1	chr7	43562171	43562371	+	1	NA	NA	NA	-99	NM_001008549	210104	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0.080000	0.572139	
mm_19896.1	chr2	114051982	114052182	-	1	NA	NA	NA	793	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.025000	0.532338	-39(CCCTCTAAAGGA,-,0.00)
mm_119888.1	chr14	54936171	54936371	+	1	NA	NA	NA	-199	NM_026066	67272	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	0.000000	0.517413	-86(CTCCCTTAAAGG,-,0.00)
mm_83660.1	chr9	49554486	49554686	-	1	NA	NA	NA	36298	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.010000	0.487562	
mm_53736.1	chr6	145121773	145121973	+	1	NA	NA	NA	134	NM_008511	16970	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.035000	0.527363	
mm_114566.1	chr13	74617723	74617923	+	1	NA	NA	NA	-22049	NM_030711	80898	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0.010000	0.512438	
mm_4278.1	chr1	171619130	171619330	+	1	NA	NA	NA	-11820	NM_008534	17085	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	0.030000	0.497512	-33(GAGTATAAATAG,-,0.00)
mm_65523.1	chr7	25772173	25772373	-	1	NA	NA	NA	16460	NM_001190974	26362	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.005000	0.497512	
mm_134586.1	chr16	20425826	20426026	-	1	NA	NA	NA	468	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.070000	0.661692	
mm_103926.1	chr11	83647981	83648181	-	1	NA	NA	NA	1297	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.010000	0.348259	
mm_55250.1	chr6	52866223	52866423	-	1	NA	NA	NA	43297	NM_001168277	231986	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.005000	0.452736	
mm_44977.1	chr5	36827213	36827413	-	1	NA	NA	NA	3336	NM_008550	17160	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0.005000	0.477612	
mm_9761.1	chr1	180885405	180885605	-	1	NA	NA	NA	-7603	NM_177099	320202	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0.000000	0.552239	
mm_7989.1	chr1	134234892	134235092	-	1	NA	NA	NA	-136	NM_001291928	11539	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri	adenosine A1 receptor	protein-coding	0.070000	0.646766	50(CCTCTTTAAAGG,-,0.00),51(CTCTTTAAAGGC,+,0.00),51(CTCTTTAAAGGC,-,0.00),52(TCTTTAAAGGCG,+,0.00)
mm_38266.1	chr4	136880485	136880685	-	1	NA	NA	NA	5592	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.075000	0.577114	
mm_58616.1	chr7	5064970	5065170	+	1	NA	NA	NA	2927	NM_001205231	22185	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.020000	0.378109	
mm_35397.1	chr4	34586968	34587168	-	1	NA	NA	NA	27874	NM_001159563	50793	Mm.399624	NM_015824	ENSMUSG00000040044	Orc3	Orc3l	origin recognition complex, subunit 3	protein-coding	0.015000	0.373134	
mm_133797.1	chr16	95279261	95279461	+	1	NA	NA	NA	21803	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.010000	0.447761	
mm_65920.1	chr7	30231611	30231811	-	1	NA	NA	NA	318	NM_025548	66411	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	0.095000	0.636816	
mm_14559.1	chr2	134786108	134786308	+	1	NA	NA	NA	44	NM_001145830	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding	0.110000	0.721393	
mm_86240.1	chr9	120919232	120919432	-	1	NA	NA	NA	-4082	NR_040742	76402	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0.020000	0.517413	
mm_51696.1	chr6	86571044	86571244	+	1	NA	NA	NA	43743	NR_037961	72012	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.015000	0.557214	
mm_43600.1	chr5	137831137	137831337	+	1	NA	NA	NA	5041	NM_153510	231805	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.005000	0.517413	
mm_142513.1	chr17	46202525	46202725	-	1	NA	NA	NA	0	NM_030715	80905	Mm.311585	NM_030715	ENSMUSG00000023953	Polh	RAD30A|XPV	polymerase (DNA directed), eta (RAD 30 related)	protein-coding	0.125000	0.706468	
mm_117193.1	chr13	63566164	63566364	-	1	NA	NA	NA	-529	NM_008957	19206	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes	patched 1	protein-coding	0.045000	0.567164	
mm_114751.1	chr13	84290195	84290395	+	1	NA	NA	NA	67999	NM_175187	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	0.000000	0.333333	
mm_9375.1	chr1	172210099	172210299	-	1	NA	NA	NA	-3395	NM_011063	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.005000	0.517413	
mm_133671.1	chr16	92082403	92082603	+	1	NA	NA	NA	24167	NM_080456	121022	Mm.217354	NM_080456	ENSMUSG00000039680	Mrps6	AW046321	mitochondrial ribosomal protein S6	protein-coding	0.010000	0.398010	
mm_115882.1	chr13	21783299	21783499	-	1	NA	NA	NA	-2	NM_178207	319153	Mm.390558	NM_178207	ENSMUSG00000101972	Hist1h3i	H3-H	histone cluster 1, H3i	protein-coding	0.040000	0.512438	
mm_167287.1	chr8	41100676	41100876	+	1	NA	NA	NA	13891	NM_001286413	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.020000	0.412935	
mm_57896.1	chr6	131375995	131376195	-	1	NA	NA	NA	12355	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.075000	0.631841	
mm_55345.1	chr6	56715360	56715560	-	1	NA	NA	NA	555	NM_030235	78937	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	0.065000	0.542289	
mm_54249.1	chr6	28261027	28261227	-	1	NA	NA	NA	474	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.205000	0.825871	
mm_13250.1	chr2	98663703	98663903	+	1	NA	NA	NA	1196146	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.010000	0.338308	
mm_31070.1	chr4	41352512	41352712	+	1	NA	NA	NA	3616	NM_023305	67123	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.000000	0.467662	
mm_63310.1	chr7	126862479	126862679	+	1	NA	NA	NA	607	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	0.055000	0.527363	
mm_124380.1	chr14	108813831	108814031	-	1	NA	NA	NA	100308	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.005000	0.388060	
mm_122210.1	chr14	32085517	32085717	-	1	NA	NA	NA	75	NR_104303	105638	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	0.105000	0.656716	
mm_10705.1	chr2	22773989	22774189	+	1	NA	NA	NA	-238	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.005000	0.487562	
mm_19329.1	chr2	90577298	90577498	-	1	NA	NA	NA	3249	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.000000	0.412935	-72(CCCTTTAAAAAT,-,0.00)
mm_51267.1	chr6	72098719	72098919	+	1	NA	NA	NA	1211	NM_011375	20454	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.005000	0.467662	-95(GTACTTAAAAGG,-,0.00)
mm_10035.1	chr1	192834458	192834658	-	1	NA	NA	NA	-7147	NR_040468	73455	Mm.414869	NR_040468		1700065J18Rik	-	RIKEN cDNA 1700065J18 gene	ncRNA	0.050000	0.606965	
mm_49984.1	chr6	41032979	41033179	+	1	NA	NA	NA	2430	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.472637	
mm_87739.1	chr10	60218931	60219131	+	1	NA	NA	NA	229	NM_016803	53374	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	0.120000	0.746269	
mm_45514.1	chr5	72504241	72504441	-	1	NA	NA	NA	-133	NM_016869	53419	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.065000	0.606965	
mm_52445.1	chr6	113654282	113654482	+	1	NA	NA	NA	15915	NM_001113553	108960	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.010000	0.527363	
mm_40552.1	chr5	58226523	58226723	+	1	NA	NA	NA	226375	NR_046190	78163	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA	0.005000	0.407960	
mm_166169.1	chr5	23501500	23501700	+	1	NA	NA	NA	67171	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.005000	0.477612	
mm_7056.1	chr1	87156036	87156236	-	1	NA	NA	NA	0	NM_001277925	13599	Mm.140765	NM_021306	ENSMUSG00000026247	Ecel1	DINE|xce	endothelin converting enzyme-like 1	protein-coding	0.120000	0.771144	
mm_67333.1	chr7	79742924	79743124	-	1	NA	NA	NA	1	NM_011068	18631	Mm.20615	NM_011068	ENSMUSG00000030545	Pex11a	PEX11alpha	peroxisomal biogenesis factor 11 alpha	protein-coding	0.100000	0.681592	
mm_51258.1	chr6	72097251	72097451	+	1	NA	NA	NA	-257	NM_001035228	20454	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.055000	0.587065	
mm_121674.1	chr14	12616037	12616237	-	1	NA	NA	NA	206942	NM_001042617	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	0.010000	0.447761	
mm_37536.1	chr4	125065538	125065738	-	1	NA	NA	NA	19	NM_175223	75563	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	0.050000	0.592040	
mm_36488.1	chr4	83052135	83052335	-	1	NA	NA	NA	-68	NM_001198811	329872	Mm.242337	NM_177863	ENSMUSG00000059049	Frem1	BC037594|D430009N09|D630008K06|crf11|eye<m02Jus>|eyes2|heb|qbrick	Fras1 related extracellular matrix protein 1	protein-coding	0.035000	0.592040	
mm_27645.1	chr3	63893741	63893941	-	1	NA	NA	NA	35544	NM_177856	329659	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding	0.025000	0.447761	
mm_8487.1	chr1	153620632	153620832	-	1	NA	NA	NA	-32305	NM_026380	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding	0.025000	0.398010	
mm_123341.1	chr14	63136423	63136623	-	1	NA	NA	NA	14061	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.035000	0.582090	
mm_46024.1	chr5	91014401	91014601	-	1	NA	NA	NA	-13016	NM_053087	71920	Mm.197319	NM_053087	ENSMUSG00000035020	Epgn	2310069M11Rik|epigen	epithelial mitogen	protein-coding	0.005000	0.487562	-34(TGTTATAAAGGG,-,0.00)
mm_137150.1	chr17	23679604	23679804	+	1	NA	NA	NA	339	NM_018777	54419	Mm.86421	NM_018777	ENSMUSG00000023906	Cldn6	AL024037	claudin 6	protein-coding	0.070000	0.676617	
mm_93945.1	chr10	127230587	127230787	-	1	NA	NA	NA	-19065	NM_054097	117150	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	0.020000	0.567164	
mm_162348.1	chr1	53825082	53825282	+	1	NA	NA	NA	-24242	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.010000	0.462687	
mm_53963.1	chr6	5496206	5496406	-	1	NA	NA	NA	-28	NM_013743	27273	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.050000	0.636816	
mm_20413.1	chr2	129300239	129300439	-	1	NA	NA	NA	2969	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.005000	0.363184	
mm_106511.1	chr11	120492446	120492646	-	1	NA	NA	NA	709	NM_013770	27376	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0.025000	0.522388	
mm_2580.1	chr1	118569806	118570006	+	1	NA	NA	NA	-58039	NM_023755	81879	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.000000	0.388060	
mm_103227.1	chr11	70669914	70670114	-	1	NA	NA	NA	-598	NM_001167669	216873	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0.040000	0.601990	
mm_110146.1	chr12	26448598	26448798	-	1	NA	NA	NA	7754	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.005000	0.447761	
mm_44912.1	chr5	35663965	35664165	-	1	NA	NA	NA	15715	NM_001042615	78558	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.035000	0.542289	
mm_143508.1	chr17	71752823	71753023	-	1	NA	NA	NA	-38	NM_146082	225004	Mm.134151	NM_146082	ENSMUSG00000044375	BC027072	-	cDNA sequence BC027072	protein-coding	0.025000	0.512438	
mm_92354.1	chr10	75920104	75920304	-	1	NA	NA	NA	1410	NM_011418	20587	Mm.279751	NM_011418	ENSMUSG00000000902	Smarcb1	AU020204|Baf47|Ini1|SNF5/INI1|Snf5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding	0.005000	0.422886	
mm_7487.1	chr1	121327651	121327851	-	1	NA	NA	NA	-73	NM_001271531	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.100000	0.716418	
mm_113717.1	chr13	43615907	43616107	+	1	NA	NA	NA	210	NM_183204	328234	Mm.40588	NM_183204	ENSMUSG00000044164	Rnf182	C630023L15Rik	ring finger protein 182	protein-coding	0.140000	0.751244	
mm_16084.1	chr2	168670106	168670306	+	1	NA	NA	NA	-29447	NR_105971	102466784		NR_105971	ENSMUSG00000105496	Mir7004	mmu-mir-7004	microRNA 7004	ncRNA	0.020000	0.601990	
mm_34601.1	chr4	150237105	150237305	+	1	NA	NA	NA	8	NM_023119	13806	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	0.090000	0.646766	
mm_95834.1	chr11	57011473	57011673	+	1	NA	NA	NA	-45	NM_001113325	14799	Mm.4920	NM_008165	ENSMUSG00000020524	Gria1	2900051M01Rik|Glr-1|Glr1|GluA1|GluR-A|GluRA|Glur-1|Glur1|HIPA1|gluR-K1	glutamate receptor, ionotropic, AMPA1 (alpha 1)	protein-coding	0.005000	0.572139	
mm_7726.1	chr1	130715919	130716119	-	1	NA	NA	NA	-198	NM_008825	18640	Mm.249861	NM_008825	ENSMUSG00000026409	Pfkfb2	4930568D07Rik	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding	0.035000	0.611940	
mm_54079.1	chr6	15683353	15683553	-	1	NA	NA	NA	-37208	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.000000	0.427861	
mm_16810.1	chr2	11169977	11170177	-	1	NA	NA	NA	-2305	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.020000	0.477612	
mm_16075.1	chr2	168230518	168230718	+	1	NA	NA	NA	-4	NM_001160330	69372	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	0.070000	0.567164	
mm_21436.1	chr2	158610473	158610673	-	1	NA	NA	NA	150	NR_040358	100045469	Mm.143404	NR_040358	ENSMUSG00000086496	Gm14204	OTTMUSG00000015935	predicted gene 14204	ncRNA	0.055000	0.606965	
mm_19197.1	chr2	84443067	84443267	-	1	NA	NA	NA	-17901	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.015000	0.293532	
mm_154655.1	chrX	7841854	7842054	+	1	NA	NA	NA	123	NM_138604	54644	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	0.100000	0.646766	
mm_166506.1	chr6	4759732	4759932	+	1	NA	NA	NA	12526	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.005000	0.323383	
mm_28708.1	chr3	95650416	95650616	-	1	NA	NA	NA	-8205	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.020000	0.517413	
mm_6806.1	chr1	84155982	84156182	-	1	NA	NA	NA	62879	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.015000	0.398010	
mm_167472.1	chr8	127063899	127064099	+	1	NA	NA	NA	-57	NM_033620	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.165000	0.796020	
mm_22831.1	chr3	27316923	27317123	+	1	NA	NA	NA	-54	NM_009425	22035	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.025000	0.527363	
mm_129678.1	chr15	81399594	81399794	-	1	NA	NA	NA	0	NM_133726	70356	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	0.085000	0.701493	
mm_71973.1	chr8	70583436	70583636	+	1	NA	NA	NA	-10945	NM_023627	71780	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.010000	0.517413	
mm_80653.1	chr9	90054262	90054462	+	1	NA	NA	NA	95	NM_001312649	13036	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.015000	0.562189	
mm_172355.1	chr7	11477937	11478137	+	1	NA	NA	NA	80122	NM_001110316	665902	Mm.425380	NM_001110316	ENSMUSG00000070828	Zscan4f	C330039H09Rik	zinc finger and SCAN domain containing 4F	protein-coding	0.015000	0.472637	-37(CGCTATAAAAGG,-,0.00)
mm_45665.1	chr5	77211049	77211249	-	1	NA	NA	NA	56	NM_001289767	69982	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0.035000	0.522388	
mm_18410.1	chr2	60553190	60553390	-	1	NA	NA	NA	18	NM_008867	18779	Mm.5092	NM_008867	ENSMUSG00000054580	Pla2r1	Pla2-r|Pla2g1br|Pla2r	phospholipase A2 receptor 1	protein-coding	0.055000	0.606965	
mm_154742.1	chrX	10319757	10319957	+	1	NA	NA	NA	67552	NM_008769	18416	Mm.2611	NM_008769	ENSMUSG00000031173	Otc	AI265390|Sf|spf	ornithine transcarbamylase	protein-coding	0.000000	0.388060	
mm_39822.1	chr5	30797096	30797296	+	1	NA	NA	NA	-17445	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.010000	0.577114	
mm_146801.1	chr18	20738539	20738739	-	1	NA	NA	NA	7765	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.000000	0.368159	
mm_119731.1	chr14	54075639	54075839	+	1	NA	NA	NA	178190	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.487562	
mm_94153.1	chr10	128744146	128744346	-	1	NA	NA	NA	-190	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.015000	0.527363	
mm_127155.1	chr15	98570954	98571154	+	1	NA	NA	NA	50	NM_001201322	73863	Mm.66894	NM_001201322	ENSMUSG00000022993	4930415O20Rik	-	RIKEN cDNA 4930415O20 gene	protein-coding	0.015000	0.442786	
mm_123906.1	chr14	73322134	73322334	-	1	NA	NA	NA	3557	NM_009029	19645	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb	retinoblastoma 1	protein-coding	0.000000	0.318408	
mm_100855.1	chr11	5837698	5837898	-	1	NA	NA	NA	218	NM_017401	54125	Mm.260194	NM_017401	ENSMUSG00000020474	Polm	AI462166|B230309I03Rik|Tdt-N	polymerase (DNA directed), mu	protein-coding	0.065000	0.597015	
mm_88053.1	chr10	67540649	67540849	+	1	NA	NA	NA	2819	NM_001347458	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.060000	0.567164	
mm_95794.1	chr11	55097972	55098172	+	1	NA	NA	NA	87	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.080000	0.651741	36(GTCTTTAAAGGC,+,0.00),36(GTCTTTAAAGGC,-,0.00),37(TCTTTAAAGGCA,+,0.00)
mm_107273.1	chr12	29533359	29533559	+	1	NA	NA	NA	-1446	NM_001093776	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.030000	0.587065	
mm_10005.1	chr1	191575408	191575608	-	1	NA	NA	NA	36	NM_001305233	76843	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	0.110000	0.651741	
mm_162635.1	chr1	190170166	190170366	+	1	NA	NA	NA	414	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding	0.055000	0.562189	
mm_75807.1	chr8	70234029	70234229	-	1	NA	NA	NA	-97	NM_001168290	234373	Mm.284505	NM_172755	ENSMUSG00000036054	Sugp2	Sfrs14|Srsf14|mKIAA0365	SURP and G patch domain containing 2	protein-coding	0.100000	0.691542	-71(GCGCTTATATGG,-,0.00),-69(GCTTATATGGTG,+,0.00)
mm_45413.1	chr5	66337562	66337762	-	1	NA	NA	NA	3	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.075000	0.676617	
mm_35134.1	chr4	11385332	11385532	-	1	NA	NA	NA	1346	NM_001347052	207920	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	0.075000	0.671642	
mm_18817.1	chr2	74579312	74579512	-	1	NA	NA	NA	-464	NM_027133	69605	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	0.015000	0.487562	
mm_144884.1	chr18	36796428	36796628	+	1	NA	NA	NA	2605	NM_025594	66492	Mm.251155	NM_025594	ENSMUSG00000001383	Zmat2	2610510D14Rik|2900082I05Rik	zinc finger, matrin type 2	protein-coding	0.035000	0.492537	
mm_120318.1	chr14	63142724	63142924	+	1	NA	NA	NA	20362	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.015000	0.497512	
mm_71127.1	chr8	36458084	36458284	+	1	NA	NA	NA	-31007	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding	0.070000	0.631841	
mm_51810.1	chr6	88827298	88827498	+	1	NA	NA	NA	14537	NM_030251	80283	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.005000	0.537313	
mm_95292.1	chr11	45981137	45981337	+	1	NA	NA	NA	927	NM_173384	214105	Mm.66708	NM_173384	ENSMUSG00000040489	Sox30	-	SRY (sex determining region Y)-box 30	protein-coding	0.025000	0.542289	
mm_75535.1	chr8	57320351	57320551	-	1	NA	NA	NA	408	NR_110474	102636514		NR_110474	ENSMUSG00000100510	Uph	-	upperhand	ncRNA	0.035000	0.582090	
mm_73989.1	chr8	120668215	120668415	+	1	NA	NA	NA	-5	NM_001293559	12857	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit IV isoform 1	protein-coding	0.125000	0.736318	
mm_130818.1	chr15	101786461	101786661	-	1	NA	NA	NA	-103	NM_213728	105866	Mm.298210	NM_213728	ENSMUSG00000056605	Krt72	AI507495|K6irs2|Krt2-35|Krt72-ps	keratin 72	protein-coding	0.035000	0.582090	8(GACTATTTAAGG,-,0.00),10(CTATTTAAGGGG,+,0.00)
mm_155682.1	chrX	93675025	93675225	+	1	NA	NA	NA	13	NM_211138	236899	Mm.166467	NM_177546	ENSMUSG00000035246	Pcyt1b	AW045697|CTTbeta	phosphate cytidylyltransferase 1, choline, beta isoform	protein-coding	0.030000	0.547264	
mm_154600.1	chrX	7593407	7593607	+	1	NA	NA	NA	11913	NM_138603	54638	Mm.288192	NM_138603	ENSMUSG00000031143	Ccdc22	AI481216|DXImx40e|Ppp1r3f|Sfc22	coiled-coil domain containing 22	protein-coding	0.010000	0.467662	
mm_166660.1	chr6	88074937	88075137	-	1	NA	NA	NA	-9436	NM_133933	103963	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	0.045000	0.567164	
mm_146244.1	chr18	77564045	77564245	+	1	NA	NA	NA	991	NM_001164504	225743	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0.050000	0.587065	
mm_27476.1	chr3	53463170	53463370	-	1	NA	NA	NA	-12	NM_172501	212114	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0.085000	0.646766	
mm_140696.1	chr17	13899108	13899308	-	1	NA	NA	NA	-49165	NM_001122977	635895	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.035000	0.592040	
mm_21099.1	chr2	153232023	153232223	-	1	NA	NA	NA	-6682	NM_198617	241732	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.015000	0.567164	
mm_112854.1	chr13	20837129	20837329	+	1	NA	NA	NA	43116	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.363184	
mm_73253.1	chr8	104339272	104339472	+	1	NA	NA	NA	-1222	NM_024217	68119	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.025000	0.502488	0(GTCTCTTAAAGA,-,0.00),3(TCTTAAAGAGCC,+,0.00)
mm_7045.1	chr1	87125637	87125837	-	1	NA	NA	NA	729	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.045000	0.577114	
mm_98027.1	chr11	85194243	85194443	+	1	NA	NA	NA	23247	NM_028589	73634	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0.020000	0.537313	23(CACCTTAAATGG,-,0.00),25(CCTTAAATGGTG,+,0.00)
mm_8108.1	chr1	135852149	135852349	-	1	NA	NA	NA	11388	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.015000	0.502488	
mm_41165.1	chr5	87956194	87956394	+	1	NA	NA	NA	23057	NR_045924	73471	Mm.396240	NR_045924	ENSMUSG00000099605	1700066N21Rik	-	RIKEN cDNA 1700066N21 gene	ncRNA	0.010000	0.412935	
mm_13323.1	chr2	102778172	102778372	+	1	NA	NA	NA	71834	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.005000	0.383085	
mm_9667.1	chr1	177796621	177796821	-	1	NA	NA	NA	-212	NM_007422	11566	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.095000	0.716418	
mm_165920.1	chr4	59401948	59402148	+	1	NA	NA	NA	36585	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.005000	0.522388	
mm_154929.1	chrX	35888529	35888729	+	1	NA	NA	NA	-203	NM_001009947	75974	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	0.070000	0.711443	
mm_77513.1	chr8	122893898	122894098	-	1	NA	NA	NA	45624	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.020000	0.497512	
mm_10625.1	chr2	19657652	19657852	+	1	NA	NA	NA	145	NR_033642	100041244	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0.150000	0.746269	
mm_10056.1	chr1	193242330	193242530	-	1	NA	NA	NA	-70	NM_001044751	15483	Mm.28328	NM_008288	ENSMUSG00000016194	Hsd11b1	-	hydroxysteroid 11-beta dehydrogenase 1	protein-coding	0.020000	0.537313	
mm_106619.1	chr11	120820526	120820726	-	1	NA	NA	NA	3921	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.030000	0.597015	
mm_48577.1	chr5	143505841	143506041	-	1	NA	NA	NA	22052	NM_009007	19353	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	RAS-related C3 botulinum substrate 1	protein-coding	0.020000	0.393035	
mm_91917.1	chr10	60299125	60299325	-	1	NA	NA	NA	14764	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.020000	0.552239	
mm_33461.1	chr4	130792607	130792807	+	1	NA	NA	NA	170	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.160000	0.805970	
mm_96863.1	chr11	70130053	70130253	+	1	NA	NA	NA	-204	NM_145137	216864	Mm.222465	NM_145137	ENSMUSG00000040950	Mgl2	CD301b	macrophage galactose N-acetyl-galactosamine specific lectin 2	protein-coding	0.015000	0.477612	
mm_81049.1	chr9	105495141	105495341	+	1	NA	NA	NA	-108	NM_001253836	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.115000	0.716418	
mm_43859.1	chr5	143464431	143464631	+	1	NA	NA	NA	38	NM_144915	231871	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.100000	0.656716	
mm_96724.1	chr11	69671283	69671483	+	1	NA	NA	NA	1040	NM_144958	13681	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0.090000	0.716418	
mm_111964.1	chr12	109615418	109615618	-	1	NA	NA	NA	-2740	NR_029918	723854		NR_029918	ENSMUSG00000065433	Mir370	Mirn370|mir-370|mmu-mir-370	microRNA 370	ncRNA	0.030000	0.606965	
mm_126941.1	chr15	91906452	91906652	+	1	NA	NA	NA	68224	NM_198927	223809	Mm.486225	NM_198927	ENSMUSG00000047295	Smgc	2310010P21Rik|DXImx49e|Muc19|Muc19/Smgc|Sfc21	submandibular gland protein C	protein-coding	0.030000	0.651741	
mm_13303.1	chr2	102550053	102550253	+	1	NA	NA	NA	132	NM_173749	210622	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	0.045000	0.611940	
mm_126376.1	chr15	80171499	80171699	+	1	NA	NA	NA	-2122	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.030000	0.577114	
mm_39983.1	chr5	32459171	32459371	+	1	NA	NA	NA	301	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.145000	0.736318	
mm_76065.1	chr8	78354952	78355152	-	1	NA	NA	NA	81600	NM_138944	18997	Mm.234261	NM_138944	ENSMUSG00000031688	Pou4f2	Brn-3.2|Brn-3b|Brn3b|Pou4f-rs1|mBrn3-3R	POU domain, class 4, transcription factor 2	protein-coding	0.015000	0.442786	
mm_147109.1	chr18	35703021	35703221	-	1	NA	NA	NA	23	NM_029669	76594	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	0.095000	0.611940	
mm_57507.1	chr6	125462067	125462267	-	1	NA	NA	NA	32588	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.015000	0.472637	
mm_143954.1	chr17	86831257	86831457	-	1	NA	NA	NA	77493	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.005000	0.358209	
mm_105636.1	chr11	106998374	106998574	-	1	NA	NA	NA	1051	NM_010655	16647	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.025000	0.398010	
mm_29368.1	chr3	108711302	108711502	-	1	NA	NA	NA	10897	NM_029522	76123	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0.010000	0.427861	
mm_69254.1	chr7	127874869	127875069	-	1	NA	NA	NA	1854	NM_146259	244219	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.010000	0.363184	
mm_26115.1	chr3	137780330	137780530	+	1	NA	NA	NA	-84057	NM_001316995	51788	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0.030000	0.552239	
mm_25518.1	chr3	114030452	114030652	+	1	NA	NA	NA	12	NM_007729	12814	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding	0.035000	0.592040	
mm_101413.1	chr11	28584185	28584385	-	1	NA	NA	NA	39	NM_001166661	216613	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	0.070000	0.641791	
mm_159175.1	chr2	109709497	109709697	+	1	NA	NA	NA	214	NM_001285421	12064	Mm.1442	NM_007540	ENSMUSG00000048482	Bdnf	-	brain derived neurotrophic factor	protein-coding	0.020000	0.447761	
mm_134927.1	chr16	30693854	30694054	-	1	NA	NA	NA	94231	NM_177632	224093	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.005000	0.527363	
mm_2530.1	chr1	106934413	106934613	+	1	NA	NA	NA	64	NM_027971	71869	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	0.005000	0.447761	
mm_78657.1	chr9	40457557	40457757	+	1	NA	NA	NA	-1893	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.015000	0.477612	
mm_108732.1	chr12	87514217	87514417	+	1	NA	NA	NA	1	NM_001177565	666806	Mm.379796	NM_001177565	ENSMUSG00000079034	Gm8300	EG666806	predicted gene 8300	protein-coding	0.010000	0.487562	
mm_118326.1	chr13	113618457	113618657	-	1	NA	NA	NA	7	NM_130796	170625	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.135000	0.751244	
mm_50439.1	chr6	48860292	48860492	+	1	NA	NA	NA	18736	NM_001098271	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.040000	0.616915	
mm_56618.1	chr6	112694547	112694747	-	1	NA	NA	NA	2023	NM_021385	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.010000	0.378109	-86(CTTTATATATGG,+,0.00),-7(TTTTTTAAAGAG,+,0.00)
mm_63041.1	chr7	121089838	121090038	+	1	NA	NA	NA	6500	NM_139310	246190	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0.035000	0.592040	
mm_65917.1	chr7	30198731	30198931	-	1	NA	NA	NA	-3783	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.010000	0.517413	
mm_108625.1	chr12	85599256	85599456	+	1	NA	NA	NA	-60	NM_030887	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.110000	0.736318	
mm_70484.1	chr8	12396022	12396222	+	1	NA	NA	NA	603	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.045000	0.567164	
mm_122874.1	chr14	54925731	54925931	-	1	NA	NA	NA	957	NM_010112	13644	Mm.236438	NM_010112	ENSMUSG00000022203	Efs	-	embryonal Fyn-associated substrate	protein-coding	0.045000	0.656716	
mm_171236.1	chr3	68902785	68902985	-	1	NA	NA	NA	33299	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.075000	0.636816	
mm_113011.1	chr13	21910871	21911071	+	1	NA	NA	NA	-13922	NR_035500	100316716		NR_035500	ENSMUSG00000088148	Mir1983	mmu-mir-1983	microRNA 1983	ncRNA	0.025000	0.477612	
mm_159828.1	chr5	124414321	124414521	-	1	NA	NA	NA	11493	NM_001081203	243272	Mm.23879	NM_001081203	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch homolog 1 (Drosophila)	protein-coding	0.010000	0.422886	
mm_80341.1	chr9	75071482	75071682	+	1	NA	NA	NA	376	NM_010864	17918	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	0.160000	0.810945	
mm_159647.1	chr4	144686259	144686459	-	1	NA	NA	NA	9	NM_001085504	230890	Mm.457843	NM_001085504	ENSMUSG00000078505	Gm436	-	predicted gene 436	protein-coding	0.005000	0.412935	45(GTCTTTATATGG,-,0.00),47(CTTTATATGGGC,+,0.00)
mm_143055.1	chr17	57004602	57004802	-	1	NA	NA	NA	-4597	NM_008954	19197	Mm.86487	NM_008954	ENSMUSG00000002664	Pspn	PSP	persephin	protein-coding	0.015000	0.572139	
mm_57331.1	chr6	124741024	124741224	-	1	NA	NA	NA	-45	NM_013535	14790	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.050000	0.582090	
mm_17640.1	chr2	31153069	31153269	-	1	NA	NA	NA	853	NM_178760	277463	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0.015000	0.432836	
mm_92248.1	chr10	70559139	70559339	-	1	NA	NA	NA	33573	NM_001162846	70911	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding	0.025000	0.517413	
mm_126199.1	chr15	78877066	78877266	+	1	NA	NA	NA	-24	NM_145929	106039	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	0.080000	0.587065	-58(GCCCTTTTAAGG,-,0.00),-57(CCCTTTTAAGGG,-,0.00),-56(CCTTTTAAGGGA,+,0.00),-55(CTTTTAAGGGAC,+,0.00)
mm_130757.1	chr15	101270646	101270846	-	1	NA	NA	NA	3900	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.030000	0.626866	
mm_158525.1	chrX	143860890	143861090	-	1	NA	NA	NA	-33578	NM_007603	12338	Mm.30290	NM_007603	ENSMUSG00000067276	Capn6	-	calpain 6	protein-coding	0.015000	0.368159	
mm_51991.1	chr6	92092231	92092431	+	1	NA	NA	NA	-102	NM_001347342	22026	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.075000	0.731343	
mm_46577.1	chr5	107403529	107403729	-	1	NA	NA	NA	116	NM_001001804	384214	Mm.489863	NM_001001804	ENSMUSG00000033805	Ephx4	Abhd7|Ephxrp|Gm1382	epoxide hydrolase 4	protein-coding	0.130000	0.751244	
mm_145501.1	chr18	60391070	60391270	+	1	NA	NA	NA	15141	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.353234	
mm_88330.1	chr10	75571427	75571627	+	1	NA	NA	NA	-1968	NM_008116	14598	Mm.4559	NM_008116	ENSMUSG00000006345	Ggt1	CD224|GGT|GGT 1|GGT-1|Ggtp|dwg	gamma-glutamyltransferase 1	protein-coding	0.025000	0.592040	
mm_162728.1	chr10	41490029	41490229	-	1	NA	NA	NA	211	NM_009213	20598	Mm.953	NM_009213	ENSMUSG00000019822	Smpd2	AW108287|nSMase|nSMase1	sphingomyelin phosphodiesterase 2, neutral	protein-coding	0.100000	0.681592	
mm_13283.1	chr2	101624675	101624875	+	1	NA	NA	NA	27	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.015000	0.527363	
mm_150911.1	chr19	46057199	46057399	+	1	NA	NA	NA	760	NM_001081214	226169	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	0.055000	0.641791	
mm_25949.1	chr3	131637659	131637859	+	1	NA	NA	NA	71727	NM_001289477	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.025000	0.507463	
mm_141797.1	chr17	34344476	34344676	-	1	NA	NA	NA	69	NM_010381	100504404	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	0.020000	0.447761	
mm_136946.1	chr17	14399166	14399366	+	1	NA	NA	NA	-324	NR_027986	74917	Mm.32228	NM_183107		4930474M22Rik	-	RIKEN cDNA 4930474M22 gene	ncRNA	0.010000	0.542289	
mm_83499.1	chr9	45953579	45953779	-	1	NA	NA	NA	1570	NM_172257	214597	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	0.020000	0.532338	
mm_121001.1	chr14	79481466	79481666	+	1	NA	NA	NA	-298	NM_018765	22380	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0.135000	0.746269	
mm_114585.1	chr13	75711743	75711943	+	1	NA	NA	NA	4359	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.005000	0.358209	
mm_90448.1	chr10	127676951	127677151	+	1	NA	NA	NA	-14	NM_173732	210035	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0.115000	0.736318	
mm_146922.1	chr18	31634690	31634890	-	1	NA	NA	NA	407	NM_172965	269003	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0.085000	0.701493	
mm_138533.1	chr17	35243116	35243316	+	1	NA	NA	NA	399	NM_001252457	53817	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	0.035000	0.562189	
mm_118515.1	chr14	14347017	14347217	+	1	NA	NA	NA	622	NM_008369	16188	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0.060000	0.691542	
mm_85484.1	chr9	106096642	106096842	-	1	NA	NA	NA	-51	NM_026763	68553	Mm.28854	NM_026763	ENSMUSG00000032572	Col6a4	1110001D15Rik|AI413310|AU023415|Dvwa|EG235580|Vwa6	collagen, type VI, alpha 4	protein-coding	0.010000	0.582090	
mm_43295.1	chr5	134314869	134315069	+	1	NA	NA	NA	-209	NM_010365	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.095000	0.701493	
mm_63120.1	chr7	122965542	122965742	+	1	NA	NA	NA	4817	NR_045614	73951	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.015000	0.442786	
mm_142397.1	chr17	45433418	45433618	-	1	NA	NA	NA	189	NM_152810	71702	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0.100000	0.626866	
mm_140952.1	chr17	24599097	24599297	-	1	NA	NA	NA	33430	NM_011647	22084	Mm.30435	NM_011647	ENSMUSG00000002496	Tsc2	Nafld|Tcs2	tuberous sclerosis 2	protein-coding	0.010000	0.567164	
mm_159580.1	chr4	118734436	118734636	+	1	NA	NA	NA	5	NM_146852	258851	Mm.377719	NM_146852	ENSMUSG00000070820	Olfr1339	MOR258-2	olfactory receptor 1339	protein-coding	0.010000	0.432836	
mm_119926.1	chr14	54968691	54968891	+	1	NA	NA	NA	4	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.010000	0.557214	
mm_74266.1	chr8	124898380	124898580	+	1	NA	NA	NA	594	NM_001111141	244666	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	0.100000	0.611940	
mm_74129.1	chr8	123193866	123194066	+	1	NA	NA	NA	7731	NM_007876	13479	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	0.025000	0.502488	
mm_76100.1	chr8	80392204	80392404	-	1	NA	NA	NA	-101741	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.005000	0.407960	
mm_163787.1	chr14	8099507	8099707	-	1	NA	NA	NA	1394	NM_178279	218699	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|MONaKA	PX domain containing serine/threonine kinase	protein-coding	0.015000	0.462687	
mm_38069.1	chr4	134094984	134095184	-	1	NA	NA	NA	-11	NM_013706	23833	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	0.010000	0.537313	
mm_52490.1	chr6	114648813	114649013	+	1	NA	NA	NA	5816	NM_001253717	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.005000	0.497512	
mm_26186.1	chr3	138374055	138374255	+	1	NA	NA	NA	34	NR_033581	639769	Mm.484043	NR_033581	ENSMUSG00000090306	Adh6-ps1	1300002P07Rik|Adh5ps|Gm7277	alcohol dehydrogenase 6 (class V), pseudogene 1	pseudo	0.015000	0.487562	
mm_10275.1	chr2	9882424	9882624	+	1	NA	NA	NA	1278	NR_024257	381347	Mm.441450	NR_024257		4930412O13Rik	ENSMUSG00000075535|Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.075000	0.597015	
mm_125902.1	chr15	75969110	75969310	+	1	NA	NA	NA	25	NM_001081065	69020	Mm.294295	NM_001081065	ENSMUSG00000034429	Zfp707	1500031N24Rik|AI451708|AW495315	zinc finger protein 707	protein-coding	0.105000	0.636816	
mm_31773.1	chr4	63558381	63558581	+	1	NA	NA	NA	-1879	NM_144905	230279	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.085000	0.666667	
mm_62773.1	chr7	112354732	112354932	+	1	NA	NA	NA	-13476	NM_027587	100504195	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	0.020000	0.587065	
mm_81982.1	chr9	121366931	121367131	+	1	NA	NA	NA	73	NM_175114	67095	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.030000	0.577114	
mm_104473.1	chr11	95356616	95356816	-	1	NA	NA	NA	19698	NM_172543	215512	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0.010000	0.527363	
mm_54757.1	chr6	41034305	41034505	-	1	NA	NA	NA	1104	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.472637	-47(CCTCAAATAGTC,+,0.00)
mm_62913.1	chr7	117604370	117604570	+	1	NA	NA	NA	223491	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.010000	0.373134	
mm_114546.1	chr13	73937740	73937940	+	1	NA	NA	NA	29	NM_001308041	105246	Mm.278509	NM_001024508	ENSMUSG00000057649	Brd9	AL022779	bromodomain containing 9	protein-coding	0.115000	0.666667	
mm_47998.1	chr5	136160659	136160859	-	1	NA	NA	NA	9897	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.010000	0.457711	
mm_23144.1	chr3	39009732	39009932	+	1	NA	NA	NA	122892	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.030000	0.552239	
mm_26833.1	chr3	11015093	11015293	-	1	NA	NA	NA	-575063	NM_001127191	74718	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0.040000	0.477612	-78(TCTTTAATGCAC,+,0.00)
mm_16844.1	chr2	11513085	11513285	-	1	NA	NA	NA	-11095	NM_001177757	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.025000	0.557214	
mm_96835.1	chr11	70017104	70017304	+	1	NA	NA	NA	-1401	NM_001109752	13385	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs, large homolog 4 (Drosophila)	protein-coding	0.025000	0.497512	
mm_55768.1	chr6	78467421	78467621	-	1	NA	NA	NA	1353	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.010000	0.502488	
mm_64726.1	chr7	4674419	4674619	-	1	NA	NA	NA	10444	NM_024172	66245	Mm.6803	NM_024172	ENSMUSG00000063802	Hspbp1	1500019G21Rik	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	protein-coding	0.040000	0.537313	81(GCCTTTAAACGG,+,0.00)
mm_98927.1	chr11	98350348	98350548	+	1	NA	NA	NA	452	NM_001313970	19049	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0.025000	0.527363	74(GCCCCTATAGGG,-,0.00),76(CCCTATAGGGCA,+,0.00)
mm_128122.1	chr15	31268105	31268305	-	1	NA	NA	NA	43820	NM_146057	223453	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.010000	0.512438	
mm_54947.1	chr6	48613640	48613840	-	1	NA	NA	NA	560	NM_173429	243372	Mm.435190	NM_173429	ENSMUSG00000007216	Zfp775	C130032F08Rik|Znf775	zinc finger protein 775	protein-coding	0.005000	0.532338	
mm_150467.1	chr19	38395954	38396154	+	1	NA	NA	NA	74	NM_175507	240660	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	0.175000	0.820896	
mm_116436.1	chr13	42244339	42244539	-	1	NA	NA	NA	-57037	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.005000	0.527363	
mm_136250.1	chr16	90938065	90938265	-	1	NA	NA	NA	-3316	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.015000	0.422886	
mm_40694.1	chr5	65781328	65781528	+	1	NA	NA	NA	17907	NM_001024917	333789	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.005000	0.477612	
mm_77774.1	chr9	3016228	3016428	+	1	NA	NA	NA	22415	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.015000	0.323383	
mm_60577.1	chr7	44482034	44482234	+	1	NA	NA	NA	-2383	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.472637	76(CCTTATATATAC,+,0.00)
mm_68467.1	chr7	110614808	110615008	-	1	NA	NA	NA	12	NM_177324	319934	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.160000	0.761194	
mm_38237.1	chr4	136172943	136173143	-	1	NA	NA	NA	769	NM_177733	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.065000	0.636816	
mm_95656.1	chr11	53769950	53770150	+	1	NA	NA	NA	36	NM_008390	16362	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.155000	0.676617	
mm_89627.1	chr10	96371126	96371326	+	1	NA	NA	NA	145019	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.050000	0.577114	
mm_106818.1	chr12	7982933	7983133	+	1	NA	NA	NA	5356	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.502488	
mm_26.1	chr1	6214555	6214755	+	1	NA	NA	NA	-7	NM_009826	12421	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	0.130000	0.726368	
mm_133770.1	chr16	94629612	94629812	+	1	NA	NA	NA	18293	NM_001347731	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.005000	0.348259	
mm_64832.1	chr7	12921983	12922183	-	1	NA	NA	NA	-228	NM_009095	20103	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	0.075000	0.537313	
mm_140914.1	chr17	24169332	24169532	-	1	NA	NA	NA	-3	NM_009729	11984	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0.115000	0.676617	
mm_143559.1	chr17	74173840	74174040	-	1	NA	NA	NA	120923	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.000000	0.442786	
mm_111198.1	chr12	84218720	84218920	-	1	NA	NA	NA	61	NM_001163501	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.125000	0.706468	
mm_84302.1	chr9	63399139	63399339	-	1	NA	NA	NA	5	NM_027090	69478	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	0.095000	0.796020	
mm_133524.1	chr16	90832674	90832874	+	1	NA	NA	NA	1915	NM_001316761	70967	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	0.015000	0.402985	
mm_74398.1	chr8	3252565	3252765	-	1	NA	NA	NA	26952	NM_010568	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.000000	0.432836	
mm_159767.1	chr5	97392267	97392467	-	1	NA	NA	NA	-37	NM_001033191	97243	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	0.080000	0.646766	
mm_45676.1	chr5	77246168	77246368	-	1	NA	NA	NA	-19226	NM_011263	19712	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.030000	0.547264	
mm_37533.1	chr4	124862182	124862382	-	1	NA	NA	NA	-111	NM_001007573	215090	Mm.472762	NM_001007573	ENSMUSG00000042763	Maneal	Gm50	mannosidase, endo-alpha-like	protein-coding	0.150000	0.751244	
mm_98306.1	chr11	90033393	90033593	+	1	NA	NA	NA	3145	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.005000	0.507463	
mm_40090.1	chr5	34547745	34547945	+	1	NA	NA	NA	-1731	NM_001145859	24055	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.010000	0.432836	
mm_5913.1	chr1	55023718	55023918	-	1	NA	NA	NA	3660	NM_031179	81898	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	0.010000	0.447761	
mm_34250.1	chr4	141282827	141283027	+	1	NA	NA	NA	-18294	NM_010139	13836	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	0.010000	0.542289	
mm_56690.1	chr6	114041959	114042159	-	1	NA	NA	NA	21	NM_009723	11941	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.170000	0.855721	
mm_35873.1	chr4	49536588	49536788	-	1	NA	NA	NA	12858	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.000000	0.412935	
mm_85185.1	chr9	96691663	96691863	-	1	NA	NA	NA	39912	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.020000	0.437811	-9(GCTTTTCAAGAC,+,0.00)
mm_58077.1	chr6	136941377	136941577	-	1	NA	NA	NA	26	NM_001301305	11857	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	0.010000	0.502488	
mm_89718.1	chr10	98914316	98914516	+	1	NA	NA	NA	-736	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.130000	0.776119	
mm_96858.1	chr11	70092539	70092739	+	1	NA	NA	NA	-5	NM_007493	11890	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	0.010000	0.557214	
mm_154114.1	chr19	57155338	57155538	-	1	NA	NA	NA	-36414	NM_001103178	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.015000	0.537313	
mm_139341.1	chr17	50181134	50181334	+	1	NA	NA	NA	9263	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.010000	0.452736	17(TCTTATAGAGAA,+,0.00)
mm_44051.1	chr5	147873175	147873375	+	1	NA	NA	NA	12647	NM_025624	66537	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.040000	0.537313	
mm_110222.1	chr12	28635754	28635954	-	1	NA	NA	NA	99	NM_011300	20115	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	0.100000	0.656716	
mm_66160.1	chr7	31155783	31155983	-	1	NA	NA	NA	-4833	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.010000	0.547264	
mm_143150.1	chr17	57222796	57222996	-	1	NA	NA	NA	5240	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.015000	0.567164	
mm_110747.1	chr12	69976033	69976233	-	1	NA	NA	NA	10869	NM_022028	64010	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0.015000	0.472637	
mm_48019.1	chr5	136171085	136171285	-	1	NA	NA	NA	-529	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.045000	0.557214	
mm_170217.1	chr17	75555064	75555264	-	1	NA	NA	NA	-3218	NM_133747	72722	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0.045000	0.517413	
mm_1548.1	chr1	72862272	72862472	+	1	NA	NA	NA	12493	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.050000	0.592040	
mm_35714.1	chr4	44233816	44234016	-	1	NA	NA	NA	-12649	NR_039565	100628618		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA	0.200000	0.845771	
mm_47890.1	chr5	134711125	134711325	-	1	NA	NA	NA	-22635	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.020000	0.601990	
mm_68792.1	chr7	123369795	123369995	-	1	NA	NA	NA	20	NM_001122643	70497	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.140000	0.721393	
mm_41284.1	chr5	90462618	90462818	+	1	NA	NA	NA	1848	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.025000	0.472637	
mm_129463.1	chr15	78581492	78581692	-	1	NA	NA	NA	-8809	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.025000	0.592040	
mm_131117.1	chr16	5378048	5378248	+	1	NA	NA	NA	-122192	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.015000	0.437811	
mm_71199.1	chr8	40885522	40885722	+	1	NA	NA	NA	23255	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.000000	0.407960	
mm_47437.1	chr5	123181373	123181573	-	1	NA	NA	NA	1213	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.020000	0.587065	
mm_157598.1	chrX	53268945	53269145	-	1	NA	NA	NA	760	NM_030167	78755	Mm.28559	NM_030167	ENSMUSG00000036022	Fam122b	4632404H22Rik|AI256344|SPACIA2	family with sequence similarity 122, member B	protein-coding	0.035000	0.587065	
mm_151650.1	chr19	4069001	4069201	-	1	NA	NA	NA	-9807	NM_144869	225884	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.035000	0.497512	
mm_115353.1	chr13	112800679	112800879	+	1	NA	NA	NA	2	NM_008247	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.130000	0.731343	
mm_130251.1	chr15	96641470	96641670	-	1	NA	NA	NA	392	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.060000	0.611940	71(GCTTATAAACTG,+,0.00)
mm_130819.1	chr15	101802259	101802459	-	1	NA	NA	NA	-27	NM_212485	223915	Mm.291498	NM_212485	ENSMUSG00000063661	Krt73	BC067067|Kb36	keratin 73	protein-coding	0.015000	0.447761	-36(AGCTCTATAAAG,-,0.00),-34(CTCTATAAAGGG,+,0.00),-34(CTCTATAAAGGG,-,0.00)
mm_173284.1	chrY	1641581	1641781	+	1	NA	NA	NA	-181899	NM_148943	107868	Mm.347376	NM_148943	ENSMUSG00000069044	Usp9y	Dffry|Fafl2	ubiquitin specific peptidase 9, Y chromosome	protein-coding	0.055000	0.606965	
mm_27505.1	chr3	55780591	55780791	-	1	NA	NA	NA	-1819	NM_010750	17116	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.040000	0.572139	
mm_103963.1	chr11	84442592	84442792	-	1	NA	NA	NA	70809	NM_019816	56321	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0.005000	0.437811	
mm_314.1	chr1	24338436	24338636	+	1	NA	NA	NA	143333	NM_001290691	12839	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding	0.030000	0.482587	
mm_55167.1	chr6	51895481	51895681	-	1	NA	NA	NA	116968	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.010000	0.393035	
mm_1168.1	chr1	60911829	60912029	+	1	NA	NA	NA	2904	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.015000	0.437811	
mm_69283.1	chr7	128150555	128150755	-	1	NA	NA	NA	21087	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.015000	0.437811	
mm_167860.1	chrX	18162626	18162826	+	1	NA	NA	NA	151	NM_001310444	22289	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	0.085000	0.651741	
mm_44189.1	chr5	3342307	3342507	-	1	NA	NA	NA	-1486	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.050000	0.517413	
mm_3916.1	chr1	162217603	162217803	+	1	NA	NA	NA	80	NR_002870	474332	Mm.479755	NR_002870	ENSMUSG00000078190	Dnm3os	6030416H16Rik|Hag2|Npn1|P/L01	dynamin 3, opposite strand	ncRNA	0.015000	0.567164	
mm_117767.1	chr13	96471119	96471319	-	1	NA	NA	NA	-59	NM_001042714	271144	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0.030000	0.592040	
mm_165173.1	chr2	26973916	26974116	-	1	NA	NA	NA	600	NM_001290465	279028	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	0.010000	0.507463	
mm_97873.1	chr11	83176577	83176777	+	1	NA	NA	NA	1491	NM_001302559	20558	Mm.38192	NM_011410	ENSMUSG00000000204	Slfn4	AI450778	schlafen 4	protein-coding	0.000000	0.507463	
mm_7935.1	chr1	133912441	133912641	-	1	NA	NA	NA	-4542	NM_001160420	269120	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	0.030000	0.572139	
mm_52981.1	chr6	123262584	123262784	+	1	NA	NA	NA	577	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.005000	0.378109	
mm_103756.1	chr11	80858112	80858312	-	1	NA	NA	NA	88	NR_110449	75043	Mm.410815	NR_110449	ENSMUSG00000086703	4930507D10Rik	-	RIKEN cDNA 4930507D10 gene	ncRNA	0.015000	0.422886	-52(CATTTTAGAGGC,+,0.00)
mm_117045.1	chr13	58358944	58359144	-	1	NA	NA	NA	-4182	NM_175214	75050	Mm.446094	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	0.150000	0.756219	
mm_69722.1	chr7	140759727	140759927	-	1	NA	NA	NA	-4005	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.000000	0.502488	
mm_137235.1	chr17	24424373	24424573	+	1	NA	NA	NA	-2210	NM_010023	13177	Mm.291743	NM_010023	ENSMUSG00000024132	Eci1	Dci|eci	enoyl-Coenzyme A delta isomerase 1	protein-coding	0.025000	0.537313	
mm_87885.1	chr10	61726053	61726253	+	1	NA	NA	NA	5504	NM_153779	71361	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	0.035000	0.522388	-88(CCTTTACGAGCC,+,0.00)
mm_98722.1	chr11	96332444	96332644	+	1	NA	NA	NA	9418	NM_001079869	15410	Mm.342481	NM_010458	ENSMUSG00000048763	Hoxb3	Hox-2.7	homeobox B3	protein-coding	0.005000	0.447761	-5(AACTTTAAAAGG,-,0.00),-3(CTTTAAAAGGTC,+,0.00)
mm_108374.1	chr12	80847052	80847252	+	1	NA	NA	NA	56620	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.000000	0.417910	
mm_149341.1	chr19	10850298	10850498	+	1	NA	NA	NA	7854	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.005000	0.442786	
mm_50409.1	chr6	48738913	48739113	+	1	NA	NA	NA	-34	NM_175860	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.025000	0.492537	-35(GTCTCTTTAAGC,-,0.00)
mm_99229.1	chr11	101062329	101062529	+	1	NA	NA	NA	-7665	NM_013792	27419	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.020000	0.577114	
mm_390.1	chr1	34089190	34089390	+	1	NA	NA	NA	-28069	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.010000	0.597015	
mm_68487.1	chr7	111072648	111072848	-	1	NA	NA	NA	10282	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.000000	0.333333	
mm_55498.1	chr6	69727082	69727282	-	1	NA	NA	NA	-400008	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.383085	
mm_105996.1	chr11	115663708	115663908	-	1	NA	NA	NA	-35513	NM_001252395	67283	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.005000	0.383085	
mm_2726.1	chr1	128196898	128197098	+	1	NA	NA	NA	-5363	NR_029543	387147		NR_029543	ENSMUSG00000065520	Mir128-1	Mirn128|Mirn128-1|Mirn128a|mir-128-1	microRNA 128-1	ncRNA	0.010000	0.472637	
mm_80381.1	chr9	75434340	75434540	+	1	NA	NA	NA	-7084	NM_001039522	235497	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0.010000	0.457711	-87(GACTCTTTAGGG,-,0.00),-33(TCTTTAAAACTG,+,0.00),85(CTCTCTTAAAAC,-,0.00)
mm_78981.1	chr9	45389780	45389980	+	1	NA	NA	NA	-9829	NR_028499	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.020000	0.527363	
mm_8981.1	chr1	165657786	165657986	-	1	NA	NA	NA	-23345	NM_001083897	68481	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.015000	0.522388	
mm_94243.1	chr11	3309959	3310159	+	1	NA	NA	NA	1059	NR_045708	100302648	Mm.458664	NR_045708	ENSMUSG00000084941	Gm11944	OTTMUSG00000005017	predicted gene 11944	ncRNA	0.010000	0.477612	
mm_142269.1	chr17	39846569	39846769	-	1	NA	NA	NA	3672	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.120000	0.636816	
mm_21782.1	chr2	164848435	164848635	-	1	NA	NA	NA	9173	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.005000	0.432836	
mm_71874.1	chr8	69654390	69654590	+	1	NA	NA	NA	-66	NM_001177527	636741	Mm.480188	NM_001177527	ENSMUSG00000091764	Zfp964	4732490P12|EG636741|Gm7187	zinc finger protein 964	protein-coding	0.100000	0.691542	
mm_40067.1	chr5	34196710	34196910	+	1	NA	NA	NA	-9100	NM_010753	17122	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.010000	0.542289	
mm_37232.1	chr4	118005814	118006014	-	1	NA	NA	NA	-76151	NM_001284192	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.010000	0.338308	
mm_62488.1	chr7	101896761	101896961	+	1	NA	NA	NA	530	NM_001291349	75430	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.045000	0.472637	
mm_48571.1	chr5	143315237	143315437	-	1	NA	NA	NA	23	NM_172726	231868	Mm.440105	NM_172726	ENSMUSG00000039244	E130309D02Rik	A630028N22	RIKEN cDNA E130309D02 gene	protein-coding	0.170000	0.800995	
mm_97263.1	chr11	75764682	75764882	+	1	NA	NA	NA	-31027	NR_136933	102641247	Mm.411386	NR_136932		Gm12339	OTTMUSG00000006218	predicted gene 12339	ncRNA	0.000000	0.398010	
mm_18826.1	chr2	74661098	74661298	-	1	NA	NA	NA	-1641	NM_007967	14029	Mm.25365	NM_007967	ENSMUSG00000001815	Evx2	Evx-2	even-skipped homeobox 2	protein-coding	0.050000	0.616915	
mm_128262.1	chr15	36771365	36771565	-	1	NA	NA	NA	19467	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.005000	0.427861	-20(ACTTTTATGGGG,+,0.00)
mm_146600.1	chr18	9450069	9450269	-	1	NA	NA	NA	-19	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.135000	0.746269	
mm_88802.1	chr10	80712674	80712874	+	1	NA	NA	NA	10081	NM_027829	71564	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.015000	0.517413	
mm_86557.1	chr10	11149312	11149512	+	1	NA	NA	NA	-18	NM_001077707	268281	Mm.133101	NM_172937	ENSMUSG00000090112	Shprh	2610103K11Rik|AA450458|AU024614|BC006883|D230017O13Rik|E130018M05	SNF2 histone linker PHD RING helicase	protein-coding	0.095000	0.681592	
mm_134553.1	chr16	19982960	19983160	-	1	NA	NA	NA	-11	NM_183390	239743	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.025000	0.507463	
mm_50790.1	chr6	54039621	54039821	+	1	NA	NA	NA	-211	NM_001163640	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.105000	0.721393	
mm_29697.1	chr3	123116891	123117091	-	1	NA	NA	NA	-82004	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.055000	0.562189	
mm_36873.1	chr4	107177618	107177818	-	1	NA	NA	NA	648	NM_025617	66526	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0.035000	0.432836	
mm_147211.1	chr18	37954844	37955044	-	1	NA	NA	NA	44	NM_010411	15183	Mm.20521	NM_010411	ENSMUSG00000024454	Hdac3	AW537363	histone deacetylase 3	protein-coding	0.090000	0.686567	
mm_80244.1	chr9	72742578	72742778	+	1	NA	NA	NA	-64596	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.025000	0.487562	
mm_166022.1	chr4	123947881	123948081	+	1	NA	NA	NA	30548	NM_017475	54170	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.000000	0.388060	
mm_121229.1	chr14	103055611	103055811	+	1	NA	NA	NA	8699	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.005000	0.383085	
mm_31854.1	chr4	76451358	76451558	+	1	NA	NA	NA	-1173172	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.010000	0.497512	84(CCTTTTAGAAGC,+,0.00)
mm_12753.1	chr2	79255130	79255330	+	1	NA	NA	NA	-196	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.025000	0.582090	
mm_29293.1	chr3	107783368	107783568	-	1	NA	NA	NA	-22999	NM_001113529	12977	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0.010000	0.517413	
mm_101086.1	chr11	11822855	11823055	-	1	NA	NA	NA	-13993	NM_001163360	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.020000	0.507463	
mm_40170.1	chr5	35814369	35814569	+	1	NA	NA	NA	56589	NM_001177698	231148	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0.030000	0.626866	
mm_32508.1	chr4	108478874	108479074	+	1	NA	NA	NA	19548	NM_175472	230594	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.010000	0.358209	
mm_116370.1	chr13	40731566	40731766	-	1	NA	NA	NA	-1209	NM_001122948	21418	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.110000	0.716418	
mm_149226.1	chr19	10034581	10034781	+	1	NA	NA	NA	-6867	NM_021890	60527	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0.010000	0.532338	
mm_55506.1	chr6	69858817	69859017	-	1	NA	NA	NA	-531743	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.482587	
mm_33884.1	chr4	136173073	136173273	+	1	NA	NA	NA	899	NM_177733	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.050000	0.592040	
mm_164854.1	chr18	48586305	48586505	+	1	NA	NA	NA	541070	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.010000	0.467662	
mm_112859.1	chr13	20842141	20842341	+	1	NA	NA	NA	48128	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.432836	
mm_166229.1	chr5	66069876	66070076	-	1	NA	NA	NA	28203	NM_139065	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.045000	0.537313	
mm_151565.1	chr19	60755863	60756063	+	1	NA	NA	NA	-24	NM_178421	332397	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos homolog 1 (Drosophila)	protein-coding	0.150000	0.776119	
mm_123708.1	chr14	69805438	69805638	-	1	NA	NA	NA	7	NM_153514	246710	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0.080000	0.522388	55(GCGTCTTAAGGC,-,0.00)
mm_158641.1	chrX	155216350	155216550	-	1	NA	NA	NA	-1	NM_001291865	20229	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	0.085000	0.636816	70(GGACTTAAAAGG,-,0.00)
mm_78770.1	chr9	43320426	43320626	+	1	NA	NA	NA	9763	NM_023655	72169	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	0.045000	0.582090	
mm_35867.1	chr4	49506431	49506631	-	1	NA	NA	NA	27	NM_007519	12012	Mm.2859	NM_007519	ENSMUSG00000039653	Baat	AI118337|AI158864|BAT	bile acid-Coenzyme A: amino acid N-acyltransferase	protein-coding	0.010000	0.388060	
mm_106091.1	chr11	116198162	116198362	-	1	NA	NA	NA	-593	NM_027107	69535	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	0.020000	0.467662	30(TGGTTTAAAAAG,-,0.00)
mm_21388.1	chr2	157557508	157557708	-	1	NA	NA	NA	-2470	NM_001291129	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.030000	0.527363	
mm_80068.1	chr9	69467193	69467393	+	1	NA	NA	NA	10349	NR_037296	100526560		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0.015000	0.467662	
mm_91869.1	chr10	59469394	59469594	-	1	NA	NA	NA	-27715	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.020000	0.422886	
mm_172212.1	chr6	59199823	59200023	+	1	NA	NA	NA	-8947	NM_001081145	68140	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.065000	0.661692	
mm_65104.1	chr7	19304337	19304537	-	1	NA	NA	NA	5608	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.030000	0.626866	
mm_94071.1	chr10	128401742	128401942	-	1	NA	NA	NA	-618	NM_001136237	72002	Mm.22983	NM_028051	ENSMUSG00000039878	Slc39a5	1810013D05Rik|2010205A06Rik|Zip5	solute carrier family 39 (metal ion transporter), member 5	protein-coding	0.040000	0.606965	
mm_98635.1	chr11	96124427	96124627	+	1	NA	NA	NA	-9259	NM_172799	237930	Mm.249912	NM_172799	ENSMUSG00000038756	Ttll6	4932418K24Rik|D11Moh43e|D11Moh44e|t8130b59	tubulin tyrosine ligase-like family, member 6	protein-coding	0.090000	0.666667	63(GGCCCTATATGC,-,0.00)
mm_159461.1	chr3	158023107	158023307	-	1	NA	NA	NA	8547	NM_001093753	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.015000	0.348259	
mm_105378.1	chr11	103267278	103267478	-	1	NA	NA	NA	23	NM_016896	53859	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.120000	0.726368	
mm_153861.1	chr19	46572971	46573171	-	1	NA	NA	NA	14	NM_019718	56350	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	0.060000	0.696517	
mm_87530.1	chr10	53344109	53344309	+	1	NA	NA	NA	6523	NM_001141927	18821	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0.010000	0.363184	
mm_105716.1	chr11	108343997	108344197	-	1	NA	NA	NA	-209	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.125000	0.761194	
mm_116454.1	chr13	43268864	43269064	-	1	NA	NA	NA	35208	NM_001033399	328232	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	0.015000	0.497512	
mm_89246.1	chr10	87858724	87858924	+	1	NA	NA	NA	-228	NM_001111275	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.005000	0.402985	
mm_57827.1	chr6	129463059	129463259	-	1	NA	NA	NA	9620	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.368159	
mm_126742.1	chr15	85723737	85723937	+	1	NA	NA	NA	-11727	NM_001113418	19013	Mm.212789	NM_011144	ENSMUSG00000022383	Ppara	4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar	peroxisome proliferator activated receptor alpha	protein-coding	0.015000	0.437811	86(AGCCATTAAAGG,-,0.00)
mm_13048.1	chr2	91098343	91098543	+	1	NA	NA	NA	1765	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.005000	0.522388	
mm_147872.1	chr18	64488880	64489080	-	1	NA	NA	NA	86	NM_007998	14151	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0.150000	0.741294	
mm_29751.1	chr3	127027569	127027769	-	1	NA	NA	NA	-29217	NM_178655	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.020000	0.467662	
mm_3126.1	chr1	134709265	134709465	+	1	NA	NA	NA	62684	NM_009307	20980	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194	synaptotagmin II	protein-coding	0.100000	0.716418	
mm_139200.1	chr17	47662890	47663090	+	1	NA	NA	NA	-24620	NR_045945	100415787	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|OTTMUSG00000018355|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	0.025000	0.393035	-7(TTTTTTAAAGGT,+,0.00)
mm_60638.1	chr7	44828431	44828631	+	1	NA	NA	NA	-7757	NM_010215	14204	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	0.030000	0.542289	
mm_163551.1	chr13	23706006	23706206	-	1	NA	NA	NA	4748	NM_001347493	15216	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0.010000	0.502488	
mm_32294.1	chr4	103117135	103117335	+	1	NA	NA	NA	1675	NM_001286223	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.000000	0.502488	
mm_38492.1	chr4	140906682	140906882	-	1	NA	NA	NA	422	NM_008812	18600	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	0.005000	0.537313	
mm_26599.1	chr3	151988344	151988544	+	1	NA	NA	NA	-150916	NM_008966	19220	Mm.331442	NM_008966	ENSMUSG00000028036	Ptgfr	AI957154|PGF|fp	prostaglandin F receptor	protein-coding	0.005000	0.427861	-99(GCCCATAAAGGA,-,0.00)
mm_125778.1	chr15	74709284	74709484	+	1	NA	NA	NA	-62	NM_008415	16469	Mm.87052	NM_008415	ENSMUSG00000046380	Jrk	-	jerky	protein-coding	0.090000	0.656716	
mm_91454.1	chr10	34019494	34019694	-	1	NA	NA	NA	22	NM_025614	66521	Mm.28528	NM_025614	ENSMUSG00000019782	Rwdd1	0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1	RWD domain containing 1	protein-coding	0.155000	0.731343	
mm_1262.1	chr1	63176994	63177194	+	1	NA	NA	NA	263	NM_018796	55949	Mm.2718	NM_018796	ENSMUSG00000025967	Eef1b2	2810017J07Rik|Eef1b	eukaryotic translation elongation factor 1 beta 2	protein-coding	0.095000	0.606965	2(CTCTATATAAGG,-,0.00)
mm_6347.1	chr1	71641930	71642130	-	1	NA	NA	NA	11204	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.045000	0.542289	
mm_21875.1	chr2	166080946	166081146	-	1	NA	NA	NA	74239	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.030000	0.587065	-19(CCCTATAGAGCT,+,0.00)
mm_117911.1	chr13	99430722	99430922	-	1	NA	NA	NA	-17996	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.512438	
mm_138945.1	chr17	44078831	44079031	+	1	NA	NA	NA	129	NM_001329619	83965	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	0.060000	0.646766	
mm_124926.1	chr15	12146181	12146381	+	1	NA	NA	NA	-25211	NR_035443	100316684		NR_035443	ENSMUSG00000084592	Mir1898	Mirn1898|mmu-mir-1898	microRNA 1898	ncRNA	0.005000	0.467662	
mm_126658.1	chr15	84231963	84232163	+	1	NA	NA	NA	20	NM_133167	170736	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.100000	0.721393	
mm_92679.1	chr10	80577206	80577406	-	1	NA	NA	NA	-10	NM_078477	118445	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0.155000	0.786070	
mm_18122.1	chr2	44997204	44997404	-	1	NA	NA	NA	25873	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.020000	0.417910	
mm_122214.1	chr14	32159969	32160169	-	1	NA	NA	NA	182	NM_001033988	27057	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.085000	0.691542	
mm_158078.1	chrX	101264859	101265059	-	1	NA	NA	NA	-967	NM_001317221	245536	Mm.212463	NM_001033362	ENSMUSG00000090141	Gm614	-	predicted gene 614	protein-coding	0.020000	0.577114	-66(GTGTCTAAAGGG,-,0.00)
mm_63514.1	chr7	127875837	127876037	+	1	NA	NA	NA	886	NM_146259	244219	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.140000	0.761194	
mm_89794.1	chr10	102511676	102511876	+	1	NA	NA	NA	-446	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding	0.015000	0.492537	
mm_125384.1	chr15	40655247	40655447	+	1	NA	NA	NA	305	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding	0.080000	0.666667	
mm_85512.1	chr9	106250924	106251124	-	1	NA	NA	NA	-3070	NM_020559	11655	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	0.015000	0.611940	
mm_14908.1	chr2	150570277	150570477	+	1	NA	NA	NA	-38	NM_009977	13011	Mm.12965	NM_009977	ENSMUSG00000068129	Cst7	Cmap	cystatin F (leukocystatin)	protein-coding	0.020000	0.542289	
mm_145718.1	chr18	62994806	62995006	+	1	NA	NA	NA	16990	NM_028017	108123	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0.035000	0.562189	
mm_83494.1	chr9	45945906	45946106	-	1	NA	NA	NA	-6416	NR_106055	102465659		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.030000	0.587065	
mm_45483.1	chr5	70960365	70960565	-	1	NA	NA	NA	-117848	NM_010252	14405	Mm.255292	NM_010252	ENSMUSG00000001260	Gabrg1	GabaA|GabaA/BZ	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1	protein-coding	0.015000	0.358209	
mm_84151.1	chr9	59486359	59486559	-	1	NA	NA	NA	-85	NM_019927	23806	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	0.180000	0.845771	
mm_165280.1	chr2	82052977	82053177	+	1	NA	NA	NA	-581	NM_175513	241514	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding	0.085000	0.616915	
mm_52091.1	chr6	97832912	97833112	+	1	NA	NA	NA	25954	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.487562	
mm_155880.1	chrX	101449067	101449267	+	1	NA	NA	NA	58	NM_013712	26549	Mm.46232	NM_013712	ENSMUSG00000031312	Itgb1bp2	Chordc3	integrin beta 1 binding protein 2	protein-coding	0.000000	0.492537	
mm_50631.1	chr6	50891201	50891401	+	1	NA	NA	NA	115186	NR_045984	319981	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0.010000	0.427861	-34(GCCTATAAATGG,-,0.00)
mm_34394.1	chr4	145017857	145018057	+	1	NA	NA	NA	124820	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.005000	0.522388	
mm_75735.1	chr8	69625070	69625270	-	1	NA	NA	NA	5	NM_001045553	234362	Mm.458487	NM_172754	ENSMUSG00000060427	Zfp868	AI449175|AW108241|C530032E20|mszf62	zinc finger protein 868	protein-coding	0.080000	0.611940	
mm_68361.1	chr7	106513656	106513856	-	1	NA	NA	NA	-72683	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.472637	
mm_141709.1	chr17	34000183	34000383	-	1	NA	NA	NA	50	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.115000	0.641791	
mm_5060.1	chr1	194986528	194986728	+	1	NA	NA	NA	-9669	NR_033564	320400	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.005000	0.298507	
mm_56657.1	chr6	113434704	113434904	-	1	NA	NA	NA	951	NM_178373	14311	Mm.10026	NM_178373	ENSMUSG00000030278	Cidec	CIDE-3|Fsp27	cell death-inducing DFFA-like effector c	protein-coding	0.020000	0.567164	
mm_160594.1	chr9	71869824	71870024	-	1	NA	NA	NA	26172	NM_001253864	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.000000	0.348259	
mm_75052.1	chr8	33234841	33235041	-	1	NA	NA	NA	150586	NM_001122822	22427	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome homolog (human)	protein-coding	0.000000	0.338308	
mm_167591.1	chr9	46240995	46241195	+	1	NA	NA	NA	251	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.025000	0.611940	-67(GGCTTTAAATGA,-,0.00)
mm_155998.1	chrX	106157342	106157542	+	1	NA	NA	NA	14167	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.005000	0.427861	
mm_67297.1	chr7	79145273	79145473	-	1	NA	NA	NA	3687	NM_001045489	17304	Mm.1451	NM_008594	ENSMUSG00000030605	Mfge8	AA408458|AI325141|MFG-E8|MP47|Mfgm|P47|SED1|lactadherin	milk fat globule-EGF factor 8 protein	protein-coding	0.025000	0.542289	-49(CTTTTTAGACCA,+,0.00)
mm_20657.1	chr2	132111353	132111553	-	1	NA	NA	NA	33655	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.030000	0.497512	
mm_83325.1	chr9	44196440	44196640	-	1	NA	NA	NA	37506	NM_007619	12402	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.005000	0.472637	
mm_92738.1	chr10	80918134	80918334	-	1	NA	NA	NA	11	NM_010722	16907	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0.145000	0.711443	
mm_106523.1	chr11	120562605	120562805	-	1	NA	NA	NA	10231	NM_011032	18453	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.020000	0.497512	
mm_99712.1	chr11	106230566	106230766	+	1	NA	NA	NA	13740	NM_028074	72047	Mm.41367	NM_028074	ENSMUSG00000020705	Ddx42	1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	protein-coding	0.000000	0.328358	
mm_141139.1	chr17	26252765	26252965	-	1	NA	NA	NA	-45	NM_025881	66978	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	0.075000	0.557214	
mm_11814.1	chr2	43997207	43997407	+	1	NA	NA	NA	68017	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.000000	0.328358	60(ACCCATATAAGG,-,0.00)
mm_105799.1	chr11	110097465	110097665	-	1	NA	NA	NA	-1628	NM_153145	217258	Mm.344148	NM_153145	ENSMUSG00000041828	Abca8a	-	ATP-binding cassette, sub-family A (ABC1), member 8a	protein-coding	0.020000	0.363184	
mm_118775.1	chr14	22937349	22937549	+	1	NA	NA	NA	157122	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA	0.015000	0.393035	52(CTCTTTAAAAAC,-,0.00)
mm_98237.1	chr11	88105274	88105474	+	1	NA	NA	NA	6228	NM_198013	103841	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	0.000000	0.388060	
mm_99371.1	chr11	101984143	101984343	+	1	NA	NA	NA	548	NM_028207	72349	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	0.045000	0.532338	
mm_97018.1	chr11	71516428	71516628	+	1	NA	NA	NA	-231296	NR_027858	627984	Mm.390378	NM_001039234	ENSMUSG00000092528	Nlrp1c-ps	Nalp1c|Nlrp1c|OTTMUSG00000006090	NLR family, pyrin domain containing 1C, pseudogene	pseudo	0.005000	0.497512	
mm_32577.1	chr4	110397637	110397837	+	1	NA	NA	NA	39	NM_030231	78933	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	0.100000	0.701493	
mm_132644.1	chr16	40495614	40495814	+	1	NA	NA	NA	-1037112	NM_001347236	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.000000	0.348259	
mm_79424.1	chr9	55430255	55430455	+	1	NA	NA	NA	81888	NM_145615	110842	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	0.075000	0.661692	
mm_37176.1	chr4	117251721	117251921	-	1	NA	NA	NA	96	NM_001145637	381544	Mm.23504	NM_001033774	ENSMUSG00000060268	Gm1661	Gm1662|Ncrna00082	predicted gene 1661	protein-coding	0.070000	0.611940	
mm_165419.1	chr2	148397462	148397662	+	1	NA	NA	NA	2185	NM_009219	20608	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0.010000	0.492537	
mm_19557.1	chr2	98666923	98667123	-	1	NA	NA	NA	1199366	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.025000	0.338308	
mm_77140.1	chr8	111521993	111522193	-	1	NA	NA	NA	14	NM_001170742	319481	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	0.045000	0.606965	
mm_81230.1	chr9	107675947	107676147	+	1	NA	NA	NA	3545	NM_008140	14685	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.095000	0.572139	
mm_76443.1	chr8	85025182	85025382	-	1	NA	NA	NA	-4	NM_019652	56495	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	0.060000	0.577114	
mm_164151.1	chr15	63814250	63814450	-	1	NA	NA	NA	-2838	NR_108057	78462	Mm.82775	NR_040315	ENSMUSG00000099435	1700065I16Rik	1700084L08Rik	gasdermin pseudogene	pseudo	0.005000	0.487562	
mm_24118.1	chr3	88167480	88167680	+	1	NA	NA	NA	10205	NR_045997	76642	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.020000	0.621891	
mm_1360.1	chr1	66323866	66324066	+	1	NA	NA	NA	2242	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.005000	0.358209	
mm_28480.1	chr3	92438679	92438879	-	1	NA	NA	NA	0	NM_009265	20754	Mm.140151	NM_009265	ENSMUSG00000048455	Sprr1b	-	small proline-rich protein 1B	protein-coding	0.015000	0.452736	-33(TTCTATAAAAAG,-,0.00)
mm_45458.1	chr5	67783642	67783842	-	1	NA	NA	NA	63689	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.010000	0.323383	
mm_20293.1	chr2	126933059	126933259	-	1	NA	NA	NA	76	NM_023220	66552	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	0.070000	0.616915	
mm_87204.1	chr10	39641018	39641218	+	1	NA	NA	NA	28184	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.020000	0.572139	
mm_1298.1	chr1	64532772	64532972	+	1	NA	NA	NA	68	NM_001037726	12912	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.105000	0.681592	
mm_56058.1	chr6	86772264	86772464	-	1	NA	NA	NA	2750	NM_001331120	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.015000	0.432836	
mm_45478.1	chr5	69592193	69592393	-	1	NA	NA	NA	-8	NM_001038015	67980	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	0.065000	0.626866	
mm_90022.1	chr10	115384951	115385151	+	1	NA	NA	NA	92	NM_001033261	216345	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0.120000	0.711443	
mm_6926.1	chr1	84849941	84850141	-	1	NA	NA	NA	10200	NM_025386	66153	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.015000	0.522388	
mm_121061.1	chr14	87416949	87417149	+	1	NA	NA	NA	466	NM_001253755	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0.180000	0.870647	
mm_10986.1	chr2	26267233	26267433	+	1	NA	NA	NA	27224	NM_177841	329366	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding	0.015000	0.547264	
mm_28206.1	chr3	88296884	88297084	-	1	NA	NA	NA	-146	NM_029801	76927	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	0.080000	0.587065	
mm_161007.1	chr11	117860696	117860896	+	1	NA	NA	NA	44	NM_001085535	546519	Mm.385578	NM_001085535	ENSMUSG00000070330	Tmem235	Cldn27|Gm12581|OTTMUSG00000007589	transmembrane protein 235	protein-coding	0.080000	0.671642	
mm_134684.1	chr16	22412870	22413070	-	1	NA	NA	NA	26600	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.020000	0.537313	
mm_9672.1	chr1	178328962	178329162	-	1	NA	NA	NA	8722	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.015000	0.353234	
mm_14852.1	chr2	148522472	148522672	+	1	NA	NA	NA	-79037	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.005000	0.437811	
mm_87703.1	chr10	59898937	59899137	+	1	NA	NA	NA	19446	NM_019965	56709	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.010000	0.462687	
mm_21023.1	chr2	152398071	152398271	-	1	NA	NA	NA	-125	NM_011438	20667	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.155000	0.756219	
mm_47638.1	chr5	125326260	125326460	-	1	NA	NA	NA	14734	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.040000	0.537313	
mm_48987.1	chr6	4755701	4755901	+	1	NA	NA	NA	8495	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.050000	0.487562	
mm_33934.1	chr4	136890281	136890481	+	1	NA	NA	NA	2533	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.035000	0.611940	
mm_119589.1	chr14	50944407	50944607	+	1	NA	NA	NA	204	NM_013632	18950	Mm.17932	NM_013632	ENSMUSG00000021871	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	0.060000	0.601990	-34(GGATATAAAGGC,-,0.00)
mm_91733.1	chr10	45486352	45486552	-	1	NA	NA	NA	-16251	NM_001031772	380669	Mm.440328	NM_001031772	ENSMUSG00000063804	Lin28b	2810403D23Rik|D030047M17Rik|Lin-28.2	lin-28 homolog B (C. elegans)	protein-coding	0.170000	0.781095	
mm_132248.1	chr16	32751268	32751468	+	1	NA	NA	NA	15482	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.010000	0.412935	
mm_91730.1	chr10	45470155	45470355	-	1	NA	NA	NA	-54	NM_001031772	380669	Mm.440328	NM_001031772	ENSMUSG00000063804	Lin28b	2810403D23Rik|D030047M17Rik|Lin-28.2	lin-28 homolog B (C. elegans)	protein-coding	0.030000	0.442786	
mm_156926.1	chrX	169302897	169303097	+	1	NA	NA	NA	17375	NM_001331050	15159	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	0.045000	0.567164	
mm_137029.1	chr17	17887732	17887932	+	1	NA	NA	NA	8	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.005000	0.412935	
mm_92180.1	chr10	67912384	67912584	-	1	NA	NA	NA	178	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0.145000	0.776119	
mm_122545.1	chr14	47757398	47757598	-	1	NA	NA	NA	93742	NM_001347522	16709	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	0.000000	0.482587	-13(TCCTTTAGAGAC,+,0.00)
mm_147059.1	chr18	34953835	34954035	-	1	NA	NA	NA	416	NM_010481	15526	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.040000	0.517413	
mm_86966.1	chr10	25359769	25359969	+	1	NA	NA	NA	71	NM_001199265	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.125000	0.736318	
mm_80873.1	chr9	98955182	98955382	+	1	NA	NA	NA	28	NR_003248	768252	Mm.129645	NR_003248	ENSMUSG00000097072	Foxl2os	ENSMUSG00000074122	forkhead box L2, opposite strand	ncRNA	0.105000	0.696517	
mm_83174.1	chr9	40782980	40783180	-	1	NA	NA	NA	-18193	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.015000	0.313433	
mm_21859.1	chr2	165884561	165884761	-	1	NA	NA	NA	177	NM_001252584	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.035000	0.487562	
mm_9862.1	chr1	184827132	184827332	-	1	NA	NA	NA	-4744	NR_035502	100316821		NR_035502	ENSMUSG00000088559	Mir1981	mir-1981|mmu-mir-1981	microRNA 1981	ncRNA	0.050000	0.577114	
mm_71012.1	chr8	31168748	31168948	+	1	NA	NA	NA	-124	NM_026453	67920	Mm.289818	NM_026453	ENSMUSG00000031578	Mak16	2600016B03Rik|AI314911|Rbm13	MAK16 homolog	protein-coding	0.100000	0.636816	
mm_47027.1	chr5	115631705	115631905	-	1	NA	NA	NA	11	NR_027810	66123	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	0.175000	0.771144	
mm_156365.1	chrX	139563621	139563821	+	1	NA	NA	NA	381	NM_001254761	66889	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	0.020000	0.432836	
mm_156360.1	chrX	139480366	139480566	+	1	NA	NA	NA	99	NM_001346522	102871	Mm.26565	NM_175326	ENSMUSG00000042498	D330045A20Rik	AI132325	RIKEN cDNA D330045A20 gene	protein-coding	0.065000	0.527363	
mm_30102.1	chr3	138493677	138493877	-	1	NA	NA	NA	-4395	NM_175224	75624	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	0.015000	0.412935	
mm_89863.1	chr10	108162098	108162298	+	1	NA	NA	NA	-202	NM_027892	17931	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.120000	0.726368	
mm_140891.1	chr17	23980472	23980672	-	1	NA	NA	NA	-5342	NM_013921	30943	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	0.025000	0.522388	
mm_8251.1	chr1	138619623	138619823	-	1	NA	NA	NA	34	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.125000	0.771144	
mm_155025.1	chrX	42067756	42067956	+	1	NA	NA	NA	20	NM_009688	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.030000	0.636816	
mm_116.1	chr1	9788315	9788515	+	1	NA	NA	NA	-9715	NM_133220	170755	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.005000	0.398010	
mm_97430.1	chr11	78094589	78094789	+	1	NA	NA	NA	16	NM_145430	216971	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0.110000	0.711443	
mm_55634.1	chr6	72333150	72333350	-	1	NA	NA	NA	11925	NM_138592	28035	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	0.015000	0.557214	
mm_120857.1	chr14	75228559	75228759	+	1	NA	NA	NA	-13628	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.005000	0.457711	
mm_168063.1	chr10	101880578	101880778	-	1	NA	NA	NA	107986	NR_037211	100526516		NR_037211	ENSMUSG00000092952	Mir3059	mir-3059|mmu-mir-3059	microRNA 3059	ncRNA	0.015000	0.472637	
mm_17681.1	chr2	32288621	32288821	-	1	NA	NA	NA	468	NM_001080968	99412	Mm.106376	NM_133852	ENSMUSG00000002546	Golga2	AW555139|GM130|mKIAA4150	golgi autoantigen, golgin subfamily a, 2	protein-coding	0.050000	0.582090	
mm_109666.1	chr12	113049871	113050071	+	1	NA	NA	NA	-24531	NM_029381	75671	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0.030000	0.601990	
mm_75776.1	chr8	69996129	69996329	-	1	NA	NA	NA	155	NM_001286450	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.135000	0.696517	
mm_138841.1	chr17	40294215	40294415	+	1	NA	NA	NA	24892	NM_009638	11571	Mm.16781	NM_009638	ENSMUSG00000025431	Crisp1	AW324342|Aeg1|CRISP-1	cysteine-rich secretory protein 1	protein-coding	0.005000	0.358209	
mm_71197.1	chr8	40884559	40884759	+	1	NA	NA	NA	22292	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.000000	0.328358	
mm_23513.1	chr3	60546720	60546920	+	1	NA	NA	NA	45641	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.338308	
mm_35840.1	chr4	48047043	48047243	-	1	NA	NA	NA	1838	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.055000	0.641791	
mm_55410.1	chr6	63328343	63328543	-	1	NA	NA	NA	71586	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.005000	0.388060	
mm_25311.1	chr3	106131765	106131965	+	1	NA	NA	NA	18483	NM_023186	81600	Mm.46418	NM_023186	ENSMUSG00000062778	Chia1	2200003E03Rik|AMCase|Chia|YNL	chitinase, acidic 1	protein-coding	0.020000	0.547264	
mm_28334.1	chr3	89386991	89387191	-	1	NA	NA	NA	-4773	NR_040403	545539	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	ENSMUSG00000074466|OTTMUSG00000021274	predicted gene 15417	ncRNA	0.020000	0.666667	
mm_137485.1	chr17	26941150	26941350	+	1	NA	NA	NA	-202	NM_001281491	240057	Mm.328888	NM_001281491	ENSMUSG00000067629	Syngap1	Gm1963|Syngap	synaptic Ras GTPase activating protein 1 homolog (rat)	protein-coding	0.035000	0.636816	
mm_130742.1	chr15	101255954	101256154	-	1	NA	NA	NA	-10792	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.005000	0.507463	
mm_77139.1	chr8	111421579	111421779	-	1	NA	NA	NA	-27858	NM_178086	338521	Mm.41083	NM_178086	ENSMUSG00000033579	Fa2h	FAAH|Faxdc1|G630055L08Rik	fatty acid 2-hydroxylase	protein-coding	0.015000	0.368159	
mm_75635.1	chr8	64733477	64733677	-	1	NA	NA	NA	1	NM_025436	66234	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	0.090000	0.696517	
mm_172406.1	chr7	15806202	15806402	-	1	NA	NA	NA	33377	NM_145710	252830	Mm.25863	NM_145710	ENSMUSG00000041583	Obox6	D17Ertd599e	oocyte specific homeobox 6	protein-coding	0.015000	0.462687	
mm_39791.1	chr5	30587946	30588146	+	1	NA	NA	NA	-124	NM_010608	16527	Mm.439936	NM_010608	ENSMUSG00000049265	Kcnk3	TASK|Task-1|cTBAK-1	potassium channel, subfamily K, member 3	protein-coding	0.110000	0.800995	
mm_36660.1	chr4	95049708	95049908	-	1	NA	NA	NA	2414	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.000000	0.457711	
mm_81989.1	chr9	121452748	121452948	+	1	NA	NA	NA	42846	NM_001284508	12424	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.020000	0.507463	
mm_75524.1	chr8	56625088	56625288	-	1	NA	NA	NA	74054	NM_015791	50753	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0.010000	0.383085	
mm_141156.1	chr17	26507063	26507263	-	1	NA	NA	NA	1309	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.040000	0.547264	
mm_69337.1	chr7	129592330	129592530	-	1	NA	NA	NA	567	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.010000	0.457711	
mm_107031.1	chr12	13303180	13303380	+	1	NA	NA	NA	34153	NM_027706	71169	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	0.005000	0.487562	
mm_152276.1	chr19	8821221	8821421	-	1	NA	NA	NA	1920	NM_001081196	68693	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0.020000	0.407960	
mm_94908.1	chr11	29374208	29374408	+	1	NA	NA	NA	136	NM_176841	108686	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0.030000	0.477612	
mm_83053.1	chr9	37544988	37545188	-	1	NA	NA	NA	5833	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.070000	0.592040	
mm_26846.1	chr3	14767396	14767596	-	1	NA	NA	NA	10964	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.005000	0.447761	
mm_154396.1	chrM	13329	13529	+	1	NA	NA	NA	NA	NA									0.005000	0.348259	
mm_144909.1	chr18	37421342	37421542	+	1	NA	NA	NA	24	NM_053136	93882	Mm.196702	NM_053136	ENSMUSG00000051486	Pcdhb11	Pcdhb5E|PcdhbK	protocadherin beta 11	protein-coding	0.030000	0.447761	
mm_134992.1	chr16	32163173	32163373	-	1	NA	NA	NA	2203	NM_146069	224109	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.005000	0.552239	
mm_41960.1	chr5	106351414	106351614	+	1	NA	NA	NA	30174	NR_136913	102635633	Mm.383511	NR_136913	ENSMUSG00000105508	Gm32921	-	predicted gene, 32921	ncRNA	0.025000	0.557214	69(CTCTCTAAGAGG,-,0.00)
mm_33175.1	chr4	126047063	126047263	+	1	NA	NA	NA	235	NM_025544	66407	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	0.090000	0.696517	
mm_169191.1	chr13	66077766	66077966	+	1	NA	NA	NA	-35587	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.015000	0.517413	-37(GTGCATATAAGC,-,0.00)
mm_164775.1	chr17	93711819	93712019	-	1	NA	NA	NA	512751	NM_009625	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.000000	0.293532	
mm_171324.1	chr3	96450342	96450542	+	1	NA	NA	NA	1864	NM_001256181	329716	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	0.080000	0.641791	
mm_104750.1	chr11	98463503	98463703	-	1	NA	NA	NA	16769	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.005000	0.432836	
mm_79122.1	chr9	46913454	46913654	+	1	NA	NA	NA	-49	NR_015605	73040	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA	0.010000	0.537313	
mm_112358.1	chr12	118966303	118966503	-	1	NA	NA	NA	18	NM_029961	77706	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0.005000	0.368159	
mm_34803.1	chr4	154864318	154864518	+	1	NA	NA	NA	-5167	NM_013783	27390	Mm.116944	NM_013783	ENSMUSG00000058183	Mmel1	Mell1|NEP2|NEPII|Nl1|SEP	membrane metallo-endopeptidase-like 1	protein-coding	0.050000	0.557214	
mm_32915.1	chr4	119136462	119136662	+	1	NA	NA	NA	27817	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.030000	0.552239	
mm_49931.1	chr6	39430941	39431141	+	1	NA	NA	NA	-10672	NM_018810	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.025000	0.527363	
mm_10428.1	chr2	13878855	13879055	+	1	NA	NA	NA	-85435	NM_145838	241230	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	0.015000	0.447761	26(AACTTTAAATGG,-,0.00)
mm_155448.1	chrX	73495124	73495324	+	1	NA	NA	NA	-7862	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.000000	0.492537	
mm_35172.1	chr4	14826486	14826686	-	1	NA	NA	NA	1	NM_152812	72201	Mm.387724	NM_152812	ENSMUSG00000040550	Otud6b	2600013N14Rik|AU015433	OTU domain containing 6B	protein-coding	0.135000	0.701493	
mm_172752.1	chr8	85037160	85037360	+	1	NA	NA	NA	92	NM_001122843	212999	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	0.090000	0.681592	
mm_138105.1	chr17	34119441	34119641	+	1	NA	NA	NA	359	NR_037970	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.095000	0.636816	
mm_76016.1	chr8	73313319	73313519	-	1	NA	NA	NA	40121	NM_001317391	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.015000	0.472637	
mm_169110.1	chr13	44869843	44870043	-	1	NA	NA	NA	132153	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.085000	0.592040	
mm_64615.1	chr7	3502523	3502723	-	1	NA	NA	NA	-71	NM_177363	245126	Mm.245747	NM_177363	ENSMUSG00000053338	Tarm1	9930022N03Rik|ENSMUSG00000053338|Gm9904|OLT-2	T cell-interacting, activating receptor on myeloid cells 1	protein-coding	0.020000	0.477612	
mm_86502.1	chr10	7212212	7212412	+	1	NA	NA	NA	-75	NM_172546	215748	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.090000	0.661692	
mm_56815.1	chr6	116673722	116673922	-	1	NA	NA	NA	14	NM_178045	213391	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.065000	0.631841	
mm_17606.1	chr2	30903162	30903362	-	1	NA	NA	NA	35	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.060000	0.676617	
mm_116666.1	chr13	49205335	49205535	-	1	NA	NA	NA	10591	NM_026738	68480	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.025000	0.592040	
mm_42027.1	chr5	108279391	108279591	+	1	NA	NA	NA	10594	NM_026106	13486	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0.010000	0.348259	
mm_46360.1	chr5	103211186	103211386	-	1	NA	NA	NA	48	NM_001081567	26414	Mm.39253	NM_009158	ENSMUSG00000046709	Mapk10	C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding	0.030000	0.562189	
mm_159658.1	chr4	148932630	148932830	+	1	NA	NA	NA	128338	NM_027195	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.040000	0.626866	
mm_117389.1	chr13	73347253	73347453	-	1	NA	NA	NA	31	NR_045293	432777	Mm.415319	NR_045293		D630045M09Rik	AU019512	RIKEN cDNA D630045M09 gene	ncRNA	0.010000	0.467662	
mm_63617.1	chr7	128238008	128238208	+	1	NA	NA	NA	-77	NM_177001	100043133	Mm.183647	NM_177001	ENSMUSG00000062944	9130023H24Rik	GLI4	RIKEN cDNA 9130023H24 gene	protein-coding	0.125000	0.706468	
mm_167883.1	chrX	48884811	48885011	+	1	NA	NA	NA	-7198	NM_001085499	209005	Mm.336054	NM_001085499	ENSMUSG00000079606	Gm595	-	predicted gene 595	protein-coding	0.015000	0.502488	
mm_64057.1	chr7	140847707	140847907	+	1	NA	NA	NA	-109	NM_027019	69287	Mm.56404	NM_027019	ENSMUSG00000025482	Odf3	1700011O04Rik|SHIPPO1	outer dense fiber of sperm tails 3	protein-coding	0.005000	0.547264	31(TCCTTTTTAGGG,-,0.00),33(CTTTTTAGGGAG,+,0.00)
mm_36120.1	chr4	58912121	58912321	-	1	NA	NA	NA	504	NM_172381	230249	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|mKIAA0368	expressed sequence AI314180	protein-coding	0.145000	0.741294	
mm_128364.1	chr15	41869597	41869797	-	1	NA	NA	NA	23	NM_175456	223513	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0.025000	0.572139	
mm_151525.1	chr19	58741117	58741317	+	1	NA	NA	NA	12330	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.020000	0.472637	85(GTGTCTATAGGG,-,0.00)
mm_89666.1	chr10	97494926	97495126	+	1	NA	NA	NA	12695	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.010000	0.432836	
mm_152038.1	chr19	6118423	6118623	-	1	NA	NA	NA	63	NM_133678	66406	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.105000	0.626866	
mm_124693.1	chr15	6438157	6438357	+	1	NA	NA	NA	-7076	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.005000	0.338308	
mm_162203.1	chrX	135302245	135302445	+	1	NA	NA	NA	29	NM_031390	83565	Mm.108239	NM_031390	ENSMUSG00000067360	Pramel3	-	preferentially expressed antigen in melanoma-like 3	protein-coding	0.035000	0.522388	
mm_104872.1	chr11	99418309	99418509	-	1	NA	NA	NA	3850	NM_010661	268482	Mm.436651	NM_010661	ENSMUSG00000020912	Krt12	AI835216|K12|Krt-12|Krt1-12	keratin 12	protein-coding	0.040000	0.547264	-86(TTCTTGAAAAGG,-,0.00)
mm_25651.1	chr3	121449656	121449856	+	1	NA	NA	NA	23215	NM_028044	71994	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0.030000	0.532338	-34(CTTTTTATGCTC,+,0.00)
mm_68684.1	chr7	119184460	119184660	-	1	NA	NA	NA	-186	NM_001024138	209776	Mm.300632	NM_001024138	ENSMUSG00000066197	Gpr139	GPRg1|Gm495|PGR3	G protein-coupled receptor 139	protein-coding	0.055000	0.671642	
mm_166895.1	chr7	28379278	28379478	-	1	NA	NA	NA	-150	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.075000	0.656716	
mm_164718.1	chr17	56472799	56472999	-	1	NA	NA	NA	3581	NM_001252455	19280	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.045000	0.621891	
mm_165319.1	chr2	104919757	104919957	+	1	NA	NA	NA	33533	NM_177600	211936	Mm.416538	NM_177600	ENSMUSG00000045106	Ccdc73	2210415I11Rik|4931417A20|AV080665|BC095976	coiled-coil domain containing 73	protein-coding	0.000000	0.432836	
mm_133268.1	chr16	77368287	77368487	+	1	NA	NA	NA	39059	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.010000	0.298507	44(ACCTTTAAATGG,-,0.00),46(CTTTAAATGGTC,+,0.00)
mm_51168.1	chr6	70726445	70726645	+	1	NA	NA	NA	65630	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.487562	
mm_58074.1	chr6	136924177	136924377	-	1	NA	NA	NA	-2097	NM_026983	69187	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding	0.025000	0.517413	
mm_32280.1	chr4	102968975	102969175	+	1	NA	NA	NA	-17304	NM_001163767	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.005000	0.363184	-1(TACTTTAAAAGC,-,0.00),0(ACTTTAAAAGCA,+,0.00)
mm_101342.1	chr11	23627135	23627335	-	1	NA	NA	NA	6396	NM_001347242	71675	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	0.000000	0.323383	
mm_120231.1	chr14	62865551	62865751	+	1	NA	NA	NA	109	NR_105860	102465311		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.000000	0.393035	
mm_1202.1	chr1	62718895	62719095	+	1	NA	NA	NA	15678	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.025000	0.517413	
mm_102662.1	chr11	64079362	64079562	-	1	NA	NA	NA	10	NM_178379	70383	Mm.340211	NM_178379	ENSMUSG00000042148	Cox10	2410004F01Rik|AU042636	cytochrome c oxidase assembly protein 10	protein-coding	0.075000	0.626866	-82(ATCTTTATAAGC,-,0.00),-80(CTTTATAAGCTC,+,0.00)
mm_101459.1	chr11	30268020	30268220	-	1	NA	NA	NA	-48348	NM_175836	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.105000	0.756219	
mm_161271.1	chr14	7332309	7332509	-	1	NA	NA	NA	-14	NM_001025085	545013	Mm.422841	NM_001025085	ENSMUSG00000072726	Gm5797	EG545013	predicted gene 5797	protein-coding	0.000000	0.462687	
mm_37622.1	chr4	127313889	127314089	-	1	NA	NA	NA	50	NM_008120	14612	Mm.24615	NM_008120	ENSMUSG00000050234	Gja4	AU020209|AW558810|Cnx37|Cx37|Gja-4	gap junction protein, alpha 4	protein-coding	0.090000	0.701493	-35(CGCTATTTAAGG,-,0.00),-33(CTATTTAAGGCG,+,0.00)
mm_147922.1	chr18	65873779	65873979	-	1	NA	NA	NA	393	NM_175012	225642	Mm.20298	NM_175012	ENSMUSG00000024517	Grp	BLP	gastrin releasing peptide	protein-coding	0.010000	0.517413	
mm_8993.1	chr1	165709581	165709781	-	1	NA	NA	NA	-1587	NM_001038846	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.010000	0.492537	-77(CCTTAAAGACTC,+,0.00)
mm_98737.1	chr11	96353233	96353433	+	1	NA	NA	NA	1701	NM_134032	103889	Mm.281153	NM_134032	ENSMUSG00000075588	Hoxb2	AI894218|Hox-2.8|Hoxbes2	homeobox B2	protein-coding	0.125000	0.746269	
mm_14550.1	chr2	132869919	132870119	+	1	NA	NA	NA	10843	NM_177303	320974	Mm.357342	NM_177303	ENSMUSG00000043110	Lrrn4	B430119L13Rik|Nlrr4	leucine rich repeat neuronal 4	protein-coding	0.010000	0.567164	
mm_16975.1	chr2	17996818	17997018	-	1	NA	NA	NA	40	NM_026627	68231	Mm.23887	NM_026627	ENSMUSG00000062651	H2afb1	1700113O17Rik|H2A.Bbd|H2al2|TSEG-1|Tseg1	H2A histone family, member B1	protein-coding	0.015000	0.492537	
mm_135489.1	chr16	46049151	46049351	-	1	NA	NA	NA	-38838	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.010000	0.383085	
mm_64116.1	chr7	141079046	141079246	+	1	NA	NA	NA	-623	NM_019762	56460	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0.015000	0.631841	
mm_33943.1	chr4	137129278	137129478	+	1	NA	NA	NA	35688	NR_040443	100503595	Mm.421314	NR_040443	ENSMUSG00000085833	Gm13003	OTTMUSG00000009822	predicted gene 13003	ncRNA	0.010000	0.597015	
mm_18852.1	chr2	75676296	75676496	-	1	NA	NA	NA	17106	NR_033513	627828	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	0.020000	0.437811	
mm_137975.1	chr17	33576524	33576724	+	1	NA	NA	NA	20917	NM_053214	17916	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0.025000	0.537313	
mm_125847.1	chr15	74958997	74959197	+	1	NA	NA	NA	3991	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.005000	0.487562	
mm_137804.1	chr17	29848122	29848322	+	1	NA	NA	NA	39660	NM_001081160	74762	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0.005000	0.398010	
mm_120900.1	chr14	75954914	75955114	+	1	NA	NA	NA	11	NM_026214	67516	Mm.390712	NM_026214	ENSMUSG00000046523	Kctd4	2210017A09Rik|AU017169	potassium channel tetramerisation domain containing 4	protein-coding	0.025000	0.482587	
mm_73865.1	chr8	118470567	118470767	+	1	NA	NA	NA	187056	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.010000	0.472637	
mm_134375.1	chr16	17144296	17144496	-	1	NA	NA	NA	27	NM_029779	76872	Mm.101656	NM_029779	ENSMUSG00000022768	Ccdc116	4930432J16Rik	coiled-coil domain containing 116	protein-coding	0.020000	0.522388	-34(GAGCTTTAAAGG,-,0.00),-33(AGCTTTAAAGGG,-,0.00),-32(GCTTTAAAGGGT,+,0.00)
mm_27498.1	chr3	55054945	55055145	-	1	NA	NA	NA	10	NM_007628	12427	Mm.4815	NM_007628	ENSMUSG00000027793	Ccna1	-	cyclin A1	protein-coding	0.090000	0.691542	
mm_3108.1	chr1	134540731	134540931	+	1	NA	NA	NA	8851	NM_001145300	71001	Mm.158529	NM_183292	ENSMUSG00000046367	Mgat4e	4931440L10Rik	MGAT4 family, member E	protein-coding	0.025000	0.562189	
mm_109958.1	chr12	12491918	12492118	-	1	NA	NA	NA	-99543	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	0.000000	0.417910	
mm_168903.1	chr12	55124371	55124571	+	1	NA	NA	NA	-57	NM_001100116	100101807	Mm.439875	NM_001100116	ENSMUSG00000094103	1700047I17Rik2	-	RIKEN cDNA 1700047I17 gene 2	protein-coding	0.125000	0.781095	
mm_118242.1	chr13	111797056	111797256	-	1	NA	NA	NA	11827	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.020000	0.572139	
mm_125827.1	chr15	74957155	74957355	+	1	NA	NA	NA	2149	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.010000	0.437811	
mm_47779.1	chr5	131963810	131964010	-	1	NA	NA	NA	83641	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.005000	0.363184	
mm_18987.1	chr2	76857091	76857291	-	1	NA	NA	NA	125356	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.015000	0.462687	
mm_152755.1	chr19	20123815	20124015	-	1	NA	NA	NA	266756	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.005000	0.363184	
mm_143260.1	chr17	65613400	65613600	-	1	NA	NA	NA	55	NM_013933	30960	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.130000	0.751244	
mm_86232.1	chr9	120571268	120571468	-	1	NA	NA	NA	-149	NM_025974	67115	Mm.289810	NM_025974	ENSMUSG00000025794	Rpl14	3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14	ribosomal protein L14	protein-coding	0.065000	0.532338	
mm_89250.1	chr10	87859068	87859268	+	1	NA	NA	NA	116	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.010000	0.422886	
mm_59206.1	chr7	24507603	24507803	+	1	NA	NA	NA	616	NR_110958	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.060000	0.582090	
mm_138715.1	chr17	36191345	36191545	+	1	NA	NA	NA	-1294	NM_008208	15043	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0.000000	0.388060	
mm_67886.1	chr7	99349071	99349271	-	1	NA	NA	NA	4068	NM_009825	12406	Mm.22708	NM_009825	ENSMUSG00000070436	Serpinh1	BERF-1|Cbp1|Cbp2|Hsp47|J6|Serpinh2|gp46	serine (or cysteine) peptidase inhibitor, clade H, member 1	protein-coding	0.050000	0.621891	
mm_43885.1	chr5	143890547	143890747	+	1	NA	NA	NA	4420	NM_025732	66729	Mm.439817	NM_025732	ENSMUSG00000029607	Ankrd61	4921520G13Rik	ankyrin repeat domain 61	protein-coding	0.010000	0.373134	
mm_161467.1	chr15	78395762	78395962	-	1	NA	NA	NA	50	NM_028522	73376	Mm.73222	NM_028522	ENSMUSG00000062154	Tex33	1700061J05Rik|Ean57	testis expressed 33	protein-coding	0.010000	0.567164	
mm_44412.1	chr5	17853994	17854194	-	1	NA	NA	NA	-4302	NM_001159556	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.348259	
mm_21197.1	chr2	155473646	155473846	-	1	NA	NA	NA	-32963	NM_019825	56406	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	0.160000	0.845771	
mm_154675.1	chrX	7899238	7899438	+	1	NA	NA	NA	2	NR_132589	21855	Mm.27393	NM_011591	ENSMUSG00000031158	Timm17b	17kDa|Sfc3|mTim17b	translocase of inner mitochondrial membrane 17b	protein-coding	0.100000	0.626866	
mm_55196.1	chr6	52200860	52201060	-	1	NA	NA	NA	-164	NR_015611	72628	Mm.348030	NR_015611	ENSMUSG00000085696	Hoxaas3	2700086A05Rik	Hoxa cluster antisense RNA 3	ncRNA	0.020000	0.402985	-83(GGCCATTAAAGT,-,0.00)
mm_154720.1	chrX	9272582	9272782	+	1	NA	NA	NA	-102	NM_023500	22439	Mm.56468	NM_023500	ENSMUSG00000015342	Xk	1810038K19Rik|XRG1|Xkh	X-linked Kx blood group	protein-coding	0.130000	0.796020	
mm_71337.1	chr8	45507723	45507923	+	1	NA	NA	NA	35	NM_001205219	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.040000	0.527363	
mm_59676.1	chr7	28383328	28383528	+	1	NA	NA	NA	-4200	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.010000	0.542289	
mm_108832.1	chr12	95760314	95760514	+	1	NA	NA	NA	68188	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.000000	0.447761	
mm_28077.1	chr3	84479347	84479547	-	1	NA	NA	NA	44	NM_001205355	229474	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0.120000	0.711443	-56(GCCCAGATAAGG,-,0.00)
mm_12689.1	chr2	76344364	76344564	+	1	NA	NA	NA	-5811	NM_001081033	241489	Mm.246613	NM_001081033	ENSMUSG00000075270	Pde11a	6330414F14Rik|A630086N24Rik|Gm350|PDE11A1	phosphodiesterase 11A	protein-coding	0.010000	0.467662	
mm_65184.1	chr7	19696374	19696574	-	1	NA	NA	NA	1924	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.030000	0.572139	
mm_105798.1	chr11	110095909	110096109	-	1	NA	NA	NA	-72	NM_153145	217258	Mm.344148	NM_153145	ENSMUSG00000041828	Abca8a	-	ATP-binding cassette, sub-family A (ABC1), member 8a	protein-coding	0.015000	0.437811	
mm_128555.1	chr15	55906669	55906869	-	1	NA	NA	NA	180	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding	0.090000	0.666667	
mm_139684.1	chr17	57419240	57419440	+	1	NA	NA	NA	60654	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.417910	
mm_53590.1	chr6	137754505	137754705	+	1	NA	NA	NA	28	NM_172733	232449	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0.060000	0.686567	
mm_129458.1	chr15	78572588	78572788	-	1	NA	NA	NA	95	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.020000	0.597015	
mm_16062.1	chr2	167932258	167932458	+	1	NA	NA	NA	31	NM_011201	19246	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.135000	0.731343	
mm_53602.1	chr6	138150719	138150919	+	1	NA	NA	NA	9225	NM_001347489	56615	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.035000	0.472637	
mm_92981.1	chr10	86693861	86694061	-	1	NA	NA	NA	8434	NR_015572	66263	Mm.392261	NR_015572		1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	0.010000	0.442786	
mm_6594.1	chr1	75278293	75278493	-	1	NA	NA	NA	22	NR_138251	19711	Mm.4032	NM_009049	ENSMUSG00000033061	Resp18	AI851012	regulated endocrine-specific protein 18	protein-coding	0.040000	0.552239	
mm_119136.1	chr14	31167854	31168054	+	1	NA	NA	NA	687	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.025000	0.502488	-85(GACTATAAAGAC,-,0.00)
mm_84839.1	chr9	78368094	78368294	-	1	NA	NA	NA	5	NM_025274	434423	Mm.139314	NM_025274	ENSMUSG00000060461	Dppa5a	AA536857|Dppa5|Esg1|ecat2	developmental pluripotency associated 5A	protein-coding	0.040000	0.597015	
mm_130560.1	chr15	99251849	99252049	-	1	NA	NA	NA	12	NM_001164156	51812	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	0.100000	0.616915	
mm_18734.1	chr2	72980831	72981031	-	1	NA	NA	NA	-485	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.075000	0.701493	
mm_99578.1	chr11	104190902	104191102	+	1	NA	NA	NA	4675	NM_199019	237958	Mm.117063	NM_199019	ENSMUSG00000049506	Sppl2c	4933407P14Rik|IMP5	signal peptide peptidase 2C	protein-coding	0.000000	0.512438	
mm_167120.1	chr7	119878584	119878784	-	1	NA	NA	NA	16774	NM_173408	233805	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0.025000	0.427861	
mm_36469.1	chr4	82705550	82705750	-	1	NA	NA	NA	154011	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0.025000	0.517413	
mm_168062.1	chr10	101567307	101567507	+	1	NA	NA	NA	-114080	NM_001205098	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.060000	0.616915	
mm_33905.1	chr4	136286084	136286284	+	1	NA	NA	NA	115	NM_009557	22704	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	0.045000	0.597015	
mm_108898.1	chr12	100187597	100187797	+	1	NA	NA	NA	-271	NR_045282	100038378	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	ENSMUSG00000072884	predicted gene 10433	ncRNA	0.070000	0.611940	
mm_13403.1	chr2	103977598	103977798	+	1	NA	NA	NA	7411	NM_001142335	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.005000	0.393035	
mm_144931.1	chr18	37714680	37714880	+	1	NA	NA	NA	-54	NM_033590	93715	Mm.247203	NM_033590	ENSMUSG00000103472	Pcdhga7	-	protocadherin gamma subfamily A, 7	protein-coding	0.045000	0.547264	
mm_43880.1	chr5	143758277	143758477	+	1	NA	NA	NA	23	NR_015486	320064	Mm.332820	NR_015486		D130017N08Rik	1700012G11Rik	RIKEN cDNA D130017N08 gene	ncRNA	0.070000	0.597015	
mm_87755.1	chr10	60278402	60278602	+	1	NA	NA	NA	874	NM_001146121	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.010000	0.422886	
mm_106701.1	chr12	3572438	3572638	+	1	NA	NA	NA	147	NR_027870	13528	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.160000	0.796020	
mm_132691.1	chr16	43235881	43236081	+	1	NA	NA	NA	-11303	NM_181058	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.015000	0.373134	
mm_40679.1	chr5	65537251	65537451	+	1	NA	NA	NA	106	NM_001310619	53323	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.135000	0.701493	
mm_88816.1	chr10	80798605	80798805	+	1	NA	NA	NA	-30	NM_013651	20222	Mm.358633	NM_013651	ENSMUSG00000020211	Sf3a2	66kDa|AW047242|PRP11|SFA66|Sap62	splicing factor 3a, subunit 2	protein-coding	0.140000	0.656716	
mm_21226.1	chr2	155930101	155930301	-	1	NA	NA	NA	109	NM_018888	56046	Mm.158827	NM_018888	ENSMUSG00000005882	Uqcc1	2310079L17Rik|2410003P15Rik|3110038N19Rik|Bfzb|Bfzp|Cbp3|Uqcc	ubiquinol-cytochrome c reductase complex assembly factor 1	protein-coding	0.090000	0.621891	
mm_130078.1	chr15	89373919	89374119	-	1	NA	NA	NA	-201	NM_001111288	100126824	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	0.130000	0.706468	
mm_9944.1	chr1	190911614	190911814	-	1	NA	NA	NA	56	NM_178775	320119	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.070000	0.671642	
mm_101484.1	chr11	31369772	31369972	-	1	NA	NA	NA	189	NM_011491	20856	Mm.32506	NM_011491	ENSMUSG00000020303	Stc2	AW125853|Stc2l|mustc2	stanniocalcin 2	protein-coding	0.055000	0.651741	
mm_133844.1	chr16	96200542	96200742	+	1	NA	NA	NA	172	NM_015825	50795	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0.035000	0.587065	
mm_149958.1	chr19	28963764	28963964	+	1	NA	NA	NA	-56	NM_028922	74411	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	0.075000	0.646766	
mm_124646.1	chr15	5116509	5116709	+	1	NA	NA	NA	-4	NM_026069	67281	Mm.10474	NM_026069	ENSMUSG00000041841	Rpl37	3110005M08Rik	ribosomal protein L37	protein-coding	0.060000	0.611940	
mm_73434.1	chr8	106149942	106150142	+	1	NA	NA	NA	-357	NM_133792	192654	Mm.284770	NM_133792	ENSMUSG00000031903	Pla2g15	ACS|C87498|LLPL|Lpla2|Lypla3	phospholipase A2, group XV	protein-coding	0.015000	0.487562	
mm_136399.1	chr16	93365231	93365431	-	1	NA	NA	NA	-4389	NR_030429	791074		NR_030429	ENSMUSG00000076457	Mir802	Mirn802|mir-802|mmu-mir-802	microRNA 802	ncRNA	0.010000	0.467662	
mm_171056.1	chr3	104864291	104864491	-	1	NA	NA	NA	114	NM_009797	12340	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	0.090000	0.666667	
mm_154226.1	chr19	59943474	59943674	-	1	NA	NA	NA	80	NM_001164367	74998	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	0.150000	0.776119	
mm_121216.1	chr14	103054678	103054878	+	1	NA	NA	NA	7766	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.552239	70(GGCCTTTAAGAG,-,0.00),71(GCCTTTAAGAGC,-,0.00),72(CCTTTAAGAGCT,+,0.00)
mm_59290.1	chr7	24990423	24990623	+	1	NA	NA	NA	-2856	NR_106014	102465634		NR_106014	ENSMUSG00000099258	Mir7047	Gm27270|mmu-mir-7047	microRNA 7047	ncRNA	0.030000	0.592040	
mm_47143.1	chr5	120560170	120560370	-	1	NA	NA	NA	28343	NM_145853	252972	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.020000	0.616915	
mm_149974.1	chr19	29067217	29067417	+	1	NA	NA	NA	16	NR_045687	100503337	Mm.103412	NR_045687		Gm9895	ENSMUSG00000052976	predicted gene 9895	ncRNA	0.015000	0.547264	
mm_124178.1	chr14	93867146	93867346	-	1	NA	NA	NA	21642	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.303483	
mm_53795.1	chr6	146724916	146725116	+	1	NA	NA	NA	86	NM_172734	232533	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	0.180000	0.805970	
mm_24067.1	chr3	87915697	87915897	+	1	NA	NA	NA	-3747	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.025000	0.472637	
mm_4373.1	chr1	172126665	172126865	+	1	NA	NA	NA	10	NM_023041	19298	Mm.247764	NM_023041	ENSMUSG00000003464	Pex19	Pxf	peroxisomal biogenesis factor 19	protein-coding	0.065000	0.601990	
mm_8637.1	chr1	156421052	156421252	-	1	NA	NA	NA	-237	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.055000	0.542289	
mm_169499.1	chr1	47657918	47658118	+	1	NA	NA	NA	-190893	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA	0.005000	0.462687	
mm_90688.1	chr10	128933705	128933905	+	1	NA	NA	NA	-8	NM_008398	16404	Mm.179747	NM_008398	ENSMUSG00000025348	Itga7	[a]7|alpha7	integrin alpha 7	protein-coding	0.050000	0.636816	
mm_117166.1	chr13	62858320	62858520	-	1	NA	NA	NA	-50	NM_007994	14120	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	0.025000	0.567164	
mm_104546.1	chr11	96773263	96773463	-	1	NA	NA	NA	4192	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.010000	0.532338	
mm_71781.1	chr8	66511638	66511838	+	1	NA	NA	NA	-2	NM_001271574	74419	Mm.159193	NM_028927	ENSMUSG00000025519	Tktl2	4933401I19Rik	transketolase-like 2	protein-coding	0.075000	0.601990	
mm_40267.1	chr5	38507966	38508166	+	1	NA	NA	NA	-5914	NM_145559	117591	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.010000	0.497512	
mm_48709.1	chr5	147221745	147221945	-	1	NA	NA	NA	33149	NM_008178	14842	Mm.4797	NM_008178	ENSMUSG00000053129	Gsx1	Gsh-1|Gsh1	GS homeobox 1	protein-coding	0.045000	0.552239	1(TTCCTTAAAGGC,-,0.00)
mm_52144.1	chr6	97977862	97978062	+	1	NA	NA	NA	-13821	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.368159	
mm_71114.1	chr8	36025573	36025773	+	1	NA	NA	NA	-69155	NM_172911	244418	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.060000	0.572139	
mm_22663.1	chr3	14871734	14871934	+	1	NA	NA	NA	8296	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.015000	0.378109	
mm_49219.1	chr6	15779062	15779262	+	1	NA	NA	NA	58501	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.005000	0.343284	
mm_161118.1	chr12	105646639	105646839	-	1	NA	NA	NA	38502	NM_029654	76559	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	0.015000	0.467662	
mm_27190.1	chr3	34757757	34757957	-	1	NA	NA	NA	-14218	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA	0.045000	0.542289	
mm_94201.1	chr11	3101856	3102056	+	1	NA	NA	NA	-22065	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.020000	0.368159	
mm_111867.1	chr12	107996117	107996317	-	1	NA	NA	NA	7197	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.020000	0.388060	-46(GTGTTTAAAAGG,-,0.00)
mm_48152.1	chr5	137151032	137151232	-	1	NA	NA	NA	-34925	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.492537	
mm_109287.1	chr12	109559005	109559205	+	1	NA	NA	NA	-4587	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.000000	0.522388	
mm_15269.1	chr2	155133427	155133627	+	1	NA	NA	NA	46	NM_008395	16396	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	0.100000	0.671642	
mm_104712.1	chr11	98051626	98051826	-	1	NA	NA	NA	1736	NM_146028	217154	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0.030000	0.507463	
mm_122010.1	chr14	27234313	27234513	-	1	NA	NA	NA	-3597	NM_027871	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.015000	0.522388	
mm_28641.1	chr3	95220057	95220257	-	1	NA	NA	NA	-2215	NM_029885	213054	Mm.224820	NM_029885	ENSMUSG00000038766	Gabpb2	1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1	GA repeat binding protein, beta 2	protein-coding	0.015000	0.487562	
mm_15083.1	chr2	153161867	153162067	+	1	NA	NA	NA	666	NM_133847	99237	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.050000	0.601990	
mm_12380.1	chr2	69861510	69861710	+	1	NA	NA	NA	48	NM_009278	20823	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	0.110000	0.651741	
mm_89958.1	chr10	111295961	111296161	+	1	NA	NA	NA	-2618	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.010000	0.333333	
mm_3906.1	chr1	161877759	161877959	+	1	NA	NA	NA	-1198	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.010000	0.512438	
mm_21815.1	chr2	165283552	165283752	-	1	NA	NA	NA	4135	NM_001252574	228875	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.020000	0.557214	
mm_145915.1	chr18	66509775	66509975	+	1	NA	NA	NA	5697	NR_040528	100503565	Mm.98256	NR_040528		Gm9926	ENSMUSG00000053891	predicted gene 9926	ncRNA	0.020000	0.368159	
mm_66574.1	chr7	45333677	45333877	-	1	NA	NA	NA	3	NM_175130	68667	Mm.439890	NM_175130	ENSMUSG00000038260	Trpm4	1110030C19Rik|AW047689|LTRPC4|LTrpC-4|TRPM4B	transient receptor potential cation channel, subfamily M, member 4	protein-coding	0.095000	0.696517	
mm_36670.1	chr4	95741138	95741338	-	1	NA	NA	NA	161817	NM_029347	75578	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.005000	0.492537	-35(GTGCTTTAAAAG,-,0.00),-34(TGCTTTAAAAGC,-,0.00),-33(GCTTTAAAAGCC,+,0.00)
mm_142434.1	chr17	45570607	45570807	-	1	NA	NA	NA	2554	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.010000	0.527363	
mm_21693.1	chr2	164473607	164473807	-	1	NA	NA	NA	17	NM_001271575	73603	Mm.472883	NM_001271575	ENSMUSG00000017720	Trp53tg5	1700126L10Rik	transformation related protein 53 target 5	protein-coding	0.025000	0.577114	
mm_101717.1	chr11	42182115	42182315	-	1	NA	NA	NA	715	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding	0.125000	0.681592	
mm_73054.1	chr8	94377758	94377958	+	1	NA	NA	NA	-8642	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.020000	0.567164	
mm_141695.1	chr17	33978712	33978912	-	1	NA	NA	NA	-21	NR_004446	630499	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	0.060000	0.636816	
mm_112051.1	chr12	111712987	111713187	-	1	NA	NA	NA	-134	NM_001324482	70369	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.165000	0.766169	
mm_80766.1	chr9	95559477	95559677	+	1	NA	NA	NA	-240	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.155000	0.800995	
mm_42556.1	chr5	117120050	117120250	+	1	NA	NA	NA	21	NM_001199685	330177	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.120000	0.721393	
mm_15808.1	chr2	164488099	164488299	+	1	NA	NA	NA	88	NM_001048229	52840	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	0.035000	0.621891	
mm_25823.1	chr3	127930524	127930724	+	1	NA	NA	NA	14453	NR_040552	329753	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	0.015000	0.477612	
mm_79625.1	chr9	59291471	59291671	+	1	NA	NA	NA	-1	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.125000	0.681592	
mm_123467.1	chr14	65973279	65973479	-	1	NA	NA	NA	4896	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.025000	0.482587	
mm_33742.1	chr4	134127567	134127767	+	1	NA	NA	NA	1086	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.020000	0.532338	
mm_71134.1	chr8	39005747	39005947	+	1	NA	NA	NA	-20	NM_030254	80286	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	0.080000	0.641791	
mm_139100.1	chr17	46924525	46924725	+	1	NA	NA	NA	14140	NM_008938	19133	Mm.291370	NM_008938	ENSMUSG00000023978	Prph2	AOFMD|AVMD|Nmf193|PRPH|RP7|Rd-2|Rd2|Rds|Tspan22|rds	peripherin 2	protein-coding	0.005000	0.547264	
mm_32430.1	chr4	107178605	107178805	+	1	NA	NA	NA	75	NM_029565	56374	Mm.291192	NM_029565	ENSMUSG00000028618	Tmem59	1110001M20Rik|3110046P06Rik|AI256529|D4Ertd20e|MTDCF1|ORF18	transmembrane protein 59	protein-coding	0.070000	0.636816	
mm_71153.1	chr8	39933277	39933477	+	1	NA	NA	NA	-290699	NM_001113326	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.015000	0.512438	
mm_31138.1	chr4	43267085	43267285	+	1	NA	NA	NA	26	NM_177195	320571	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	0.085000	0.621891	
mm_72827.1	chr8	88250712	88250912	+	1	NA	NA	NA	-21591	NM_007406	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.040000	0.467662	
mm_77955.1	chr9	7567664	7567864	+	1	NA	NA	NA	-3632	NM_001310717	234911	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.025000	0.407960	
mm_119418.1	chr14	45299803	45300003	+	1	NA	NA	NA	18669	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.015000	0.452736	
mm_88175.1	chr10	69787425	69787625	+	1	NA	NA	NA	-138007	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.030000	0.502488	
mm_4229.1	chr1	171357973	171358173	+	1	NA	NA	NA	2725	NM_001033039	68874	Mm.10756	NM_001033039	ENSMUSG00000045259	Klhdc9	1190002J23Rik|AA087357|ESTM31	kelch domain containing 9	protein-coding	0.010000	0.378109	
mm_13291.1	chr2	101965058	101965258	+	1	NA	NA	NA	78896	NM_029635	76501	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0.035000	0.547264	-31(GTGCATATAAGC,-,0.00)
mm_52142.1	chr6	97977634	97977834	+	1	NA	NA	NA	-14049	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.517413	
mm_100147.1	chr11	116006457	116006657	+	1	NA	NA	NA	6162	NM_016905	14635	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0.030000	0.592040	
mm_112442.1	chr13	5845225	5845425	+	1	NA	NA	NA	12767	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.040000	0.477612	
mm_54373.1	chr6	31184626	31184826	-	1	NA	NA	NA	33748	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.030000	0.467662	
mm_69090.1	chr7	127017222	127017422	-	1	NA	NA	NA	30	NM_030240	67278	Mm.345385	NM_030240	ENSMUSG00000030680	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0.075000	0.557214	85(CGGTCTAAAAAG,-,0.00)
mm_37051.1	chr4	116017953	116018153	-	1	NA	NA	NA	-151	NM_010173	14073	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	0.030000	0.542289	
mm_145323.1	chr18	54970955	54971155	+	1	NA	NA	NA	19125	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.020000	0.492537	
mm_40274.1	chr5	41250507	41250707	+	1	NA	NA	NA	457084	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.010000	0.378109	88(TGCTTTTAATGG,-,0.00)
mm_30307.1	chr3	149445159	149445359	-	1	NA	NA	NA	170522	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.020000	0.492537	
mm_66849.1	chr7	49637006	49637206	-	1	NA	NA	NA	-271	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.040000	0.487562	
mm_22.1	chr1	5097985	5098185	+	1	NA	NA	NA	14999	NM_001310442	108664	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	0.005000	0.348259	
mm_27260.1	chr3	37672322	37672522	-	1	NA	NA	NA	32475	NM_001305442	24063	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty homolog 1 (Drosophila)	protein-coding	0.015000	0.497512	-36(GTGTTTTTAAGC,-,0.00),-34(GTTTTTAAGCCC,+,0.00)
mm_133018.1	chr16	56477728	56477928	+	1	NA	NA	NA	-18	NM_001014422	320712	Mm.209236	NM_178790	ENSMUSG00000035258	Abi3bp	5033411B22Rik|AI506287|BG172926|D930038M13Rik|TARSH|eratin	ABI gene family, member 3 (NESH) binding protein	protein-coding	0.020000	0.542289	
mm_82789.1	chr9	28996408	28996608	-	1	NA	NA	NA	966621	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.010000	0.487562	
mm_6486.1	chr1	74108263	74108463	-	1	NA	NA	NA	16084	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.010000	0.577114	
mm_53435.1	chr6	134106169	134106369	+	1	NA	NA	NA	70569	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.030000	0.492537	
mm_151858.1	chr19	5796983	5797183	-	1	NA	NA	NA	-1102	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.010000	0.422886	
mm_81785.1	chr9	114731106	114731306	+	1	NA	NA	NA	3	NM_026036	67213	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0.115000	0.701493	
mm_72321.1	chr8	78508527	78508727	+	1	NA	NA	NA	301	NM_001252089	19656	Mm.24718	NM_009033	ENSMUSG00000037070	Rbmxl1	Hnrpg|Rbmx|Rbmxrt	RNA binding motif protein, X-linked like-1	protein-coding	0.110000	0.751244	
mm_51345.1	chr6	72549354	72549554	+	1	NA	NA	NA	181	NM_001042534	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.020000	0.562189	
mm_159873.1	chr5	149052914	149053114	-	1	NA	NA	NA	43	NM_010439	15289	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.075000	0.626866	
mm_25075.1	chr3	99968822	99969022	+	1	NA	NA	NA	83505	NM_028892	74362	Mm.55847	NM_028892	ENSMUSG00000027867	Spag17	4931427F14Rik|PF6|Spag17-ps	sperm associated antigen 17	protein-coding	0.010000	0.412935	
mm_141075.1	chr17	25844396	25844596	-	1	NA	NA	NA	355	NM_145999	214952	Mm.40907	NM_145999	ENSMUSG00000025733	Rhot2	Arht2|Miro2	ras homolog family member T2	protein-coding	0.070000	0.681592	
mm_96640.1	chr11	69326575	69326775	+	1	NA	NA	NA	417	NM_010599	16499	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0.095000	0.691542	
mm_39237.1	chr4	156255560	156255760	-	1	NA	NA	NA	-322	NM_001110516	231004	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	0.040000	0.567164	
mm_102446.1	chr11	59787121	59787321	-	1	NA	NA	NA	1	NR_110894	194908	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	0.065000	0.611940	
mm_163828.1	chr14	19417395	19417595	+	1	NA	NA	NA	185092	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.015000	0.318408	
mm_146715.1	chr18	14899274	14899474	-	1	NA	NA	NA	-89621	NR_045372	74456	Mm.391075	NR_045372		4933424G05Rik	-	RIKEN cDNA 4933424G05 gene	ncRNA	0.010000	0.368159	
mm_115588.1	chr13	11826778	11826978	-	1	NA	NA	NA	280067	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.000000	0.427861	1(GCATATATACAC,+,0.00)
mm_165680.1	chr3	90687012	90687212	+	1	NA	NA	NA	8609	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.010000	0.477612	
mm_148644.1	chr19	5490381	5490581	+	1	NA	NA	NA	26	NM_007687	12631	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.105000	0.641791	
mm_45029.1	chr5	38876633	38876833	-	1	NA	NA	NA	-40	NM_013748	27278	Mm.440845	NM_013748	ENSMUSG00000039315	Clnk	MIST	cytokine-dependent hematopoietic cell linker	protein-coding	0.030000	0.537313	
mm_43001.1	chr5	123442197	123442397	+	1	NA	NA	NA	39804	NM_029594	76399	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.010000	0.467662	
mm_97975.1	chr11	83862715	83862915	+	1	NA	NA	NA	9855	NM_001291269	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.015000	0.442786	
mm_168156.1	chr10	42055333	42055533	-	1	NA	NA	NA	-37051	NM_001034858	213402	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.075000	0.616915	
mm_141908.1	chr17	34959488	34959688	-	1	NA	NA	NA	-350	NM_010478	15511	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	0.035000	0.547264	
mm_69681.1	chr7	139986855	139987055	-	1	NA	NA	NA	-81	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.015000	0.587065	
mm_111272.1	chr12	85339222	85339422	-	1	NA	NA	NA	40	NM_145138	217718	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.115000	0.726368	
mm_138415.1	chr17	35069234	35069434	+	1	NA	NA	NA	2009	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.020000	0.552239	
mm_12316.1	chr2	69380345	69380545	+	1	NA	NA	NA	-17	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.030000	0.532338	
mm_148005.1	chr18	67774635	67774835	-	1	NA	NA	NA	-141	NM_028112	72124	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	0.060000	0.572139	
mm_18292.1	chr2	52676033	52676233	-	1	NA	NA	NA	10	NM_001285426	12298	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.120000	0.746269	
mm_18820.1	chr2	74591800	74592000	-	1	NA	NA	NA	-12952	NM_027133	69605	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	0.030000	0.522388	
mm_129399.1	chr15	78284036	78284236	-	1	NA	NA	NA	713	NR_106138	102466845		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0.005000	0.562189	
mm_126178.1	chr15	78597988	78598188	+	1	NA	NA	NA	1041	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.020000	0.592040	
mm_56351.1	chr6	93675817	93676017	-	1	NA	NA	NA	237046	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.010000	0.333333	43(GGGCATTTAAAG,-,0.00),45(GCATTTAAAGTC,+,0.00)
mm_163649.1	chr13	64065988	64066188	-	1	NA	NA	NA	23113	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.005000	0.442786	
mm_24427.1	chr3	90537260	90537460	+	1	NA	NA	NA	-3863	NM_026416	67860	Mm.331185	NM_026416	ENSMUSG00000074457	S100a16	2300002L21Rik|AI325039|AI663996|DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding	0.015000	0.676617	
mm_88793.1	chr10	80629579	80629779	+	1	NA	NA	NA	23	NM_001159591	103236	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.015000	0.621891	
mm_114139.1	chr13	55265102	55265302	+	1	NA	NA	NA	55420	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.010000	0.303483	
mm_30278.1	chr3	148819739	148819939	-	1	NA	NA	NA	134796	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.080000	0.542289	
mm_121333.1	chr14	115040870	115041070	+	1	NA	NA	NA	-2701	NR_029785	723905		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0.125000	0.686567	
mm_126454.1	chr15	80902300	80902500	+	1	NA	NA	NA	-37639	NR_039573	100628612		NR_039573	ENSMUSG00000092868	Mir5113	mir-5113|mmu-mir-5113|mu-mir-5113	microRNA 5113	ncRNA	0.015000	0.507463	
mm_44143.1	chr5	150259642	150259842	+	1	NA	NA	NA	-188	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.040000	0.651741	
mm_100912.1	chr11	6230108	6230308	-	1	NA	NA	NA	37	NM_207242	237636	Mm.212492	NM_207242	ENSMUSG00000020447	Npc1l1	9130221N23Rik|Gm243	NPC1-like 1	protein-coding	0.015000	0.532338	
mm_68674.1	chr7	118976614	118976814	-	1	NA	NA	NA	18497	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.015000	0.552239	
mm_67544.1	chr7	81493592	81493792	-	1	NA	NA	NA	233	NM_021492	11775	Mm.322894	NM_021492	ENSMUSG00000062444	Ap3b2	AI549966|AU042881|Naptb|[b]-NAP|beta-NAP|beta3B	adaptor-related protein complex 3, beta 2 subunit	protein-coding	0.095000	0.651741	-75(CCTTTAAGAACC,+,0.00)
mm_20904.1	chr2	150136564	150136764	-	1	NA	NA	NA	14	NM_023266	104348	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding	0.045000	0.532338	-2(CTCTTTTAAAGC,-,0.00),-1(TCTTTTAAAGCT,+,0.00)
mm_128765.1	chr15	66286529	66286729	-	1	NA	NA	NA	-405	NM_152923	110862	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	0.145000	0.771144	
mm_165357.1	chr2	121985580	121985780	+	1	NA	NA	NA	-29588	NM_008545	17147	Mm.389349	NM_008545	ENSMUSG00000074881	Mageb3	Mage-b3|Mage-ps1|Mage-rs3|Smage3	melanoma antigen, family B, 3	protein-coding	0.010000	0.348259	
mm_34791.1	chr4	154299544	154299744	+	1	NA	NA	NA	251	NM_001112744	230972	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.055000	0.641791	
mm_99840.1	chr11	109344189	109344389	+	1	NA	NA	NA	-2578	NR_027883	67927	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	0.010000	0.517413	-37(GGATATAAAGGC,-,0.00)
mm_132565.1	chr16	38089872	38090072	+	1	NA	NA	NA	-712	NR_033221	414072	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.125000	0.726368	
mm_65567.1	chr7	27178762	27178962	-	1	NA	NA	NA	21	NM_029391	19342	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	0.105000	0.706468	
mm_45546.1	chr5	72914006	72914206	-	1	NA	NA	NA	-256	NM_001113423	75991	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0.095000	0.731343	
mm_94291.1	chr11	4046219	4046419	+	1	NA	NA	NA	14537	NM_146013	103655	Mm.337476	NM_146013	ENSMUSG00000019368	Sec14l4	AI256582|AW536553|SPF|TAP	SEC14-like lipid binding 4	protein-coding	0.015000	0.557214	
mm_130630.1	chr15	100422951	100423151	-	1	NA	NA	NA	4	NM_001146161	18174	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0.110000	0.726368	
mm_165320.1	chr2	105683480	105683680	+	1	NA	NA	NA	1117	NM_001310145	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.000000	0.412935	
mm_45350.1	chr5	65910432	65910632	-	1	NA	NA	NA	46963	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.015000	0.592040	
mm_132992.1	chr16	53576363	53576563	+	1	NA	NA	NA	-760719	NR_040495	73820	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0.055000	0.502488	-86(CTCCTTAAGAGG,-,0.00)
mm_123297.1	chr14	61626823	61627023	-	1	NA	NA	NA	5049	NR_029734	387134		NR_029734	ENSMUSG00000092995	Mir16-1	Mirn16|Mirn16-1|miR-16|mir-16-1	microRNA 16-1	ncRNA	0.000000	0.243781	
mm_146901.1	chr18	30975174	30975374	-	1	NA	NA	NA	341854	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding	0.005000	0.442786	
mm_102963.1	chr11	69665481	69665681	-	1	NA	NA	NA	589	NM_001291058	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.020000	0.542289	
mm_26606.1	chr3	152215343	152215543	+	1	NA	NA	NA	4985	NM_057172	51886	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	0.000000	0.298507	
mm_143171.1	chr17	57226704	57226904	-	1	NA	NA	NA	1332	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.030000	0.547264	
mm_95468.1	chr11	50603275	50603475	+	1	NA	NA	NA	1290	NM_175643	216725	Mm.110597	NM_175643	ENSMUSG00000036545	Adamts2	ADAM-TS 2|ADAM-TS2|ADAMTS-2|PC I-NP|PCINP|pNPI	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2	protein-coding	0.090000	0.696517	
mm_63082.1	chr7	122288628	122288828	+	1	NA	NA	NA	-397	NM_001316672	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.020000	0.547264	
mm_116041.1	chr13	27243733	27243933	-	1	NA	NA	NA	1403	NM_008865	18776	Mm.37203	NM_008865	ENSMUSG00000038891	Prl3b1	Csh2|Ghd8|PL|Pl-2|Pl2|mPL-II|mplII	prolactin family 3, subfamily b, member 1	protein-coding	0.015000	0.442786	89(AGCTATAAAGAG,-,0.00)
mm_155322.1	chrX	62382858	62383058	+	1	NA	NA	NA	95816	NM_001199996	74437	Mm.85792	NM_001199996	ENSMUSG00000045330	4933402E13Rik	-	RIKEN cDNA 4933402E13 gene	protein-coding	0.005000	0.383085	
mm_40798.1	chr5	67611237	67611437	+	1	NA	NA	NA	3454	NM_001033415	330096	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.025000	0.601990	
mm_1519.1	chr1	72824418	72824618	+	1	NA	NA	NA	38	NM_008342	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.075000	0.671642	-60(GGCTTTTTAGGA,-,0.00)
mm_48682.1	chr5	146584754	146584954	-	1	NA	NA	NA	385	NM_001010941	14738	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	0.155000	0.786070	
mm_128931.1	chr15	74636252	74636452	-	1	NA	NA	NA	-34	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.005000	0.517413	
mm_106295.1	chr11	118212751	118212951	-	1	NA	NA	NA	-109	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.005000	0.557214	
mm_49483.1	chr6	29533975	29534175	+	1	NA	NA	NA	4793	NM_001252382	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.030000	0.572139	
mm_24934.1	chr3	96559856	96560056	+	1	NA	NA	NA	1999	NM_023719	56338	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.020000	0.512438	
mm_167372.1	chr8	90348043	90348243	-	1	NA	NA	NA	109	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding	0.180000	0.830846	
mm_19208.1	chr2	84531252	84531452	-	1	NA	NA	NA	-24479	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	0.005000	0.517413	
mm_165676.1	chr3	90487835	90488035	+	1	NA	NA	NA	3078	NM_133854	20615	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	0.005000	0.318408	
mm_139300.1	chr17	48346339	48346539	+	1	NA	NA	NA	38	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.015000	0.552239	
mm_161352.1	chr14	55115433	55115633	-	1	NA	NA	NA	1402	NM_177049	319984	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.035000	0.626866	
mm_153108.1	chr19	32956443	32956643	-	1	NA	NA	NA	198966	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.005000	0.402985	
mm_38334.1	chr4	137594730	137594930	-	1	NA	NA	NA	641	NM_130879	170707	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	0.050000	0.507463	
mm_38313.1	chr4	137118050	137118250	-	1	NA	NA	NA	46916	NR_040443	100503595	Mm.421314	NR_040443	ENSMUSG00000085833	Gm13003	OTTMUSG00000009822	predicted gene 13003	ncRNA	0.070000	0.592040	
mm_85906.1	chr9	111056392	111056592	-	1	NA	NA	NA	752	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.040000	0.562189	
mm_70611.1	chr8	13414192	13414392	+	1	NA	NA	NA	9211	NM_011881	24013	Mm.257501	NM_011881	ENSMUSG00000031450	Grk1	Gprk1|Rhok|Rk	G protein-coupled receptor kinase 1	protein-coding	0.030000	0.572139	
mm_49155.1	chr6	12910983	12911183	+	1	NA	NA	NA	-158676	NM_027992	71900	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	0.000000	0.298507	
mm_36299.1	chr4	68240817	68241017	-	1	NA	NA	NA	713480	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.000000	0.353234	-54(CCCTATTTATGG,-,0.00)
mm_18956.1	chr2	76789916	76790116	-	1	NA	NA	NA	114701	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.035000	0.537313	
mm_146394.1	chr18	82901994	82902194	+	1	NA	NA	NA	-8785	NM_183033	329003	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.020000	0.542289	-33(AGCTTTAAAAAA,-,0.00)
mm_52266.1	chr6	108386635	108386835	+	1	NA	NA	NA	-103008	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.040000	0.547264	
mm_74574.1	chr8	11202900	11203100	-	1	NA	NA	NA	-109805	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.035000	0.562189	
mm_116525.1	chr13	45790416	45790616	-	1	NA	NA	NA	174475	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.005000	0.348259	
mm_60892.1	chr7	46397206	46397406	+	1	NA	NA	NA	838	NM_001112739	16502	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.070000	0.651741	-67(TCCCCTAAAAAG,-,0.00),-65(CCCTAAAAAGCT,+,0.00)
mm_59987.1	chr7	30553201	30553401	+	1	NA	NA	NA	-1	NM_001012401	243912	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	0.055000	0.621891	
mm_169688.1	chr15	74094360	74094560	-	1	NA	NA	NA	-254789	NM_001033365	268816	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding	0.050000	0.592040	
mm_26456.1	chr3	142731429	142731629	+	1	NA	NA	NA	30481	NM_001293560	229905	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0.005000	0.353234	-64(GTTTTAAGAGAC,+,0.00)
mm_16344.1	chr2	174345402	174345602	+	1	NA	NA	NA	15413	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.040000	0.562189	
mm_99459.1	chr11	102434996	102435196	+	1	NA	NA	NA	4774	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.025000	0.601990	
mm_6832.1	chr1	84224539	84224739	-	1	NA	NA	NA	-5678	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.373134	
mm_117962.1	chr13	99513517	99513717	-	1	NA	NA	NA	2985	NM_008634	17755	Mm.4173	NM_008634	ENSMUSG00000052727	Map1b	A230055D22|AI843217|LC1|MAP5|Mtap-5|Mtap1b|Mtap5	microtubule-associated protein 1B	protein-coding	0.005000	0.313433	
mm_14788.1	chr2	145860403	145860603	+	1	NA	NA	NA	-42738	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.050000	0.597015	
mm_170197.1	chr17	6655735	6655935	-	1	NA	NA	NA	-4	NM_001166630	100040563	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	0.095000	0.661692	
mm_3223.1	chr1	135847908	135848108	+	1	NA	NA	NA	7147	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.035000	0.552239	
mm_62924.1	chr7	118600063	118600263	+	1	NA	NA	NA	2866	NM_001105252	74424	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	0.030000	0.487562	
mm_13086.1	chr2	91210684	91210884	+	1	NA	NA	NA	7872	NM_007387	11432	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.015000	0.592040	
mm_122056.1	chr14	30297203	30297403	-	1	NA	NA	NA	56183	NM_001302637	12289	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.005000	0.482587	
mm_108852.1	chr12	98445428	98445628	+	1	NA	NA	NA	-78316	NR_136759	105245437	Mm.446375	NR_136759		Gm40893	-	predicted gene, 40893	ncRNA	0.010000	0.393035	30(TCTTATATAGAT,+,0.00)
mm_52319.1	chr6	108836251	108836451	+	1	NA	NA	NA	7710	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.025000	0.497512	
mm_128097.1	chr15	27856345	27856545	-	1	NA	NA	NA	169403	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.035000	0.552239	
mm_74881.1	chr8	25091246	25091446	-	1	NA	NA	NA	10465	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.025000	0.532338	
mm_96785.1	chr11	69964685	69964885	+	1	NA	NA	NA	6	NM_001193619	53624	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	0.025000	0.572139	
mm_135609.1	chr16	52250044	52250244	-	1	NA	NA	NA	202937	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.353234	-76(CCTTTTAGACAC,+,0.00)
mm_68429.1	chr7	109808146	109808346	-	1	NA	NA	NA	-26701	NM_020610	78593	Mm.275374	NM_020610	ENSMUSG00000034825	Nrip3	A330103B05Rik|D7H11orf14|ICRFP703B1614Q5.2	nuclear receptor interacting protein 3	protein-coding	0.000000	0.452736	10(GCTTTAAAACAG,+,0.00)
mm_50829.1	chr6	54679363	54679563	+	1	NA	NA	NA	-2161	NM_001289741	68235	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.025000	0.537313	
mm_40920.1	chr5	75830347	75830547	+	1	NA	NA	NA	147981	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.010000	0.512438	
mm_131109.1	chr16	5080850	5081050	+	1	NA	NA	NA	30882	NM_026666	170644	Mm.66356	NM_026666	ENSMUSG00000039473	Ubn1	1110029L11Rik|2610108L02Rik|AA673476|AW124741	ubinuclein 1	protein-coding	0.000000	0.333333	
mm_58659.1	chr7	6460125	6460325	+	1	NA	NA	NA	-286	NM_146915	258917	Mm.223322	NM_146915	ENSMUSG00000048620	Olfr1336	MOR103-7	olfactory receptor 1336	protein-coding	0.005000	0.407960	
mm_8000.1	chr1	134415169	134415369	-	1	NA	NA	NA	-109	NM_028320	72674	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.070000	0.656716	
mm_24916.1	chr3	96268577	96268777	+	1	NA	NA	NA	23	NM_178215	319154	Mm.383293	NM_178215	ENSMUSG00000074403	Hist2h3b	H3-615|H3-616	histone cluster 2, H3b	protein-coding	0.075000	0.577114	
mm_28858.1	chr3	97204379	97204579	-	1	NA	NA	NA	22885	NM_029933	77578	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.015000	0.393035	
mm_155790.1	chrX	97526887	97527087	+	1	NA	NA	NA	-149778	NM_001161433	245527	Mm.189270	NM_175540	ENSMUSG00000034457	Eda2r	9430060M22Rik|TNFRSF27|Xedar	ectodysplasin A2 receptor	protein-coding	0.000000	0.328358	
mm_89419.1	chr10	90875541	90875741	+	1	NA	NA	NA	45798	NM_001347053	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.005000	0.358209	35(CCTTTTAGACAG,+,0.00)
mm_13886.1	chr2	120027395	120027595	+	1	NA	NA	NA	12	NM_001114637	433466	Mm.482417	NM_001114637	ENSMUSG00000098789	Jmjd7	-	jumonji domain containing 7	protein-coding	0.100000	0.656716	
mm_110053.1	chr12	20815626	20815826	-	1	NA	NA	NA	53	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.105000	0.731343	
mm_102825.1	chr11	69060956	69061156	-	1	NA	NA	NA	1281	NM_028005	71923	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.010000	0.507463	
mm_150189.1	chr19	32665528	32665728	+	1	NA	NA	NA	45623	NM_011864	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.010000	0.378109	36(GACTTTTTAAAG,-,0.00),38(CTTTTTAAAGCT,+,0.00)
mm_36656.1	chr4	94928702	94928902	-	1	NA	NA	NA	41	NM_027089	67753	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	0.000000	0.427861	
mm_9709.1	chr1	179517937	179518137	-	1	NA	NA	NA	-34	NM_027188	69726	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.070000	0.597015	
mm_161494.1	chr15	86057581	86057781	+	1	NA	NA	NA	-14	NM_172611	223752	Mm.24442	NM_172611	ENSMUSG00000035900	Gramd4	9930016O13	GRAM domain containing 4	protein-coding	0.005000	0.547264	
mm_44483.1	chr5	23507139	23507339	-	1	NA	NA	NA	72810	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.005000	0.288557	
mm_162772.1	chr10	68136631	68136831	-	1	NA	NA	NA	141995	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.020000	0.587065	
mm_13092.1	chr2	91256000	91256200	+	1	NA	NA	NA	-65	NM_001289677	80708	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	0.035000	0.517413	
mm_370.1	chr1	33974646	33974846	+	1	NA	NA	NA	-37079	NM_133833	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.025000	0.517413	
mm_7778.1	chr1	131276705	131276905	-	1	NA	NA	NA	2758	NM_019777	56489	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.005000	0.562189	
mm_50788.1	chr6	54039498	54039698	+	1	NA	NA	NA	-334	NM_001163640	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.090000	0.691542	
mm_172983.1	chr9	97275688	97275888	+	1	NA	NA	NA	94170	NM_030219	78911	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	0.045000	0.512438	
mm_121159.1	chr14	102982829	102983029	+	1	NA	NA	NA	-292	NM_177715	239217	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0.095000	0.701493	
mm_158239.1	chrX	106603445	106603645	-	1	NA	NA	NA	134	NM_001281862	58861	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	0.025000	0.467662	
mm_86099.1	chr9	115309961	115310161	-	1	NA	NA	NA	360	NM_024222	68292	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0.115000	0.741294	
mm_43459.1	chr5	136247389	136247589	+	1	NA	NA	NA	-2549	NM_018825	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.005000	0.457711	
mm_143447.1	chr17	70892773	70892973	-	1	NA	NA	NA	-39341	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.010000	0.512438	
mm_144975.1	chr18	37955031	37955231	+	1	NA	NA	NA	-143	NM_010411	15183	Mm.20521	NM_010411	ENSMUSG00000024454	Hdac3	AW537363	histone deacetylase 3	protein-coding	0.060000	0.601990	
mm_94814.1	chr11	23152003	23152203	+	1	NA	NA	NA	-37	NR_131065	76993	Mm.59224	NR_131065	ENSMUSG00000086366	1700061J23Rik	-	RIKEN cDNA 1700061J23 gene	ncRNA	0.000000	0.517413	
mm_156436.1	chrX	141981488	141981688	+	1	NA	NA	NA	215348	NM_001007576	245650	Mm.208511	NM_001007576	ENSMUSG00000042282	Gucy2f	A930002I06|GC-F|GC2	guanylate cyclase 2f	protein-coding	0.005000	0.477612	
mm_165537.1	chr2	180510184	180510384	+	1	NA	NA	NA	10308	NM_018766	18216	Mm.301712	NM_018766	ENSMUSG00000027568	Ntsr1	NT-1R|NTR-1|NTR1	neurotensin receptor 1	protein-coding	0.000000	0.477612	
mm_17631.1	chr2	31051090	31051290	-	1	NA	NA	NA	45310	NM_001177650	14269	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.015000	0.502488	
mm_112864.1	chr13	20847619	20847819	+	1	NA	NA	NA	53606	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.313433	37(GCTTAAAAAGAA,+,0.00),56(GCCTTTAAATGT,-,0.00)
mm_134336.1	chr16	16527185	16527385	-	1	NA	NA	NA	126	NM_001301818	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.025000	0.412935	
mm_123919.1	chr14	73364473	73364673	-	1	NA	NA	NA	20698	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.045000	0.512438	
mm_19438.1	chr2	91963653	91963853	-	1	NA	NA	NA	-190	NM_138306	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.110000	0.766169	
mm_94072.1	chr10	128401769	128401969	-	1	NA	NA	NA	-645	NM_001136237	72002	Mm.22983	NM_028051	ENSMUSG00000039878	Slc39a5	1810013D05Rik|2010205A06Rik|Zip5	solute carrier family 39 (metal ion transporter), member 5	protein-coding	0.030000	0.577114	
mm_56421.1	chr6	97252685	97252885	-	1	NA	NA	NA	-5	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.000000	0.437811	
mm_72998.1	chr8	93810458	93810658	+	1	NA	NA	NA	-280	NM_010308	14681	Mm.251445	NM_010308	ENSMUSG00000031748	Gnao1	AW050213|Galphao|Gnao|alphaO	guanine nucleotide binding protein, alpha O	protein-coding	0.165000	0.810945	
mm_92231.1	chr10	69124941	69125141	-	1	NA	NA	NA	-83511	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.010000	0.437811	
mm_6302.1	chr1	71414724	71414924	-	1	NA	NA	NA	86	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding	0.010000	0.432836	
mm_95528.1	chr11	52232147	52232347	+	1	NA	NA	NA	252	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.105000	0.701493	
mm_76428.1	chr8	84978033	84978233	-	1	NA	NA	NA	615	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.085000	0.636816	
mm_22392.1	chr2	181213028	181213228	-	1	NA	NA	NA	43	NM_011481	20811	Mm.4752	NM_011481	ENSMUSG00000027579	Srms	A230069J08Rik|srm	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding	0.055000	0.592040	
mm_56600.1	chr6	108731285	108731485	-	1	NA	NA	NA	-51674	NM_026011	67166	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0.020000	0.527363	
mm_150783.1	chr19	44295007	44295207	+	1	NA	NA	NA	1431	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.025000	0.542289	
mm_21406.1	chr2	158091649	158091849	-	1	NA	NA	NA	48	NR_040609	72340	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0.015000	0.477612	
mm_75326.1	chr8	43141420	43141620	-	1	NA	NA	NA	-34	NM_177742	244448	Mm.64542	NM_177742	ENSMUSG00000031651	Triml1	4933403D14|BC050188	tripartite motif family-like 1	protein-coding	0.005000	0.447761	
mm_109724.1	chr12	116281153	116281353	+	1	NA	NA	NA	31	NM_028731	52635	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	0.110000	0.731343	
mm_127677.1	chr15	102921040	102921240	+	1	NA	NA	NA	9	NM_010464	15422	Mm.207062	NM_010464	ENSMUSG00000001655	Hoxc13	-	homeobox C13	protein-coding	0.045000	0.616915	19(GTTTTTAAAAAG,-,0.00)
mm_151449.1	chr19	57658865	57659065	+	1	NA	NA	NA	47931	NM_181415	226255	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0.005000	0.502488	
mm_50250.1	chr6	42397230	42397430	+	1	NA	NA	NA	-2908	NM_001001452	387514	Mm.377921	NM_001001452	ENSMUSG00000046652	Tas2r143	Gm1404|Tas2r43|mt2r36	taste receptor, type 2, member 143	protein-coding	0.010000	0.457711	
mm_47563.1	chr5	124425875	124426075	-	1	NA	NA	NA	-61	NM_001081203	243272	Mm.23879	NM_001081203	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch homolog 1 (Drosophila)	protein-coding	0.110000	0.696517	
mm_89257.1	chr10	87859222	87859422	+	1	NA	NA	NA	270	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.015000	0.402985	
mm_111856.1	chr12	107939191	107939391	-	1	NA	NA	NA	64123	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.000000	0.383085	
mm_67187.1	chr7	73940225	73940425	-	1	NA	NA	NA	73357	NM_009181	20450	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0.005000	0.542289	
mm_20547.1	chr2	131068783	131068983	-	1	NA	NA	NA	-5069	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.005000	0.412935	
mm_158480.1	chrX	142196847	142197047	-	1	NA	NA	NA	-11	NM_001007576	245650	Mm.208511	NM_001007576	ENSMUSG00000042282	Gucy2f	A930002I06|GC-F|GC2	guanylate cyclase 2f	protein-coding	0.005000	0.417910	
mm_75553.1	chr8	57653554	57653754	-	1	NA	NA	NA	-599	NM_144731	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0.025000	0.532338	
mm_140271.1	chr17	84683092	84683292	+	1	NA	NA	NA	71	NM_026180	67470	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP-binding cassette, sub-family G (WHITE), member 8	protein-coding	0.000000	0.542289	
mm_17274.1	chr2	26091875	26092075	-	1	NA	NA	NA	421	NM_001037098	67991	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.055000	0.651741	
mm_126660.1	chr15	84257039	84257239	+	1	NA	NA	NA	25096	NM_133167	170736	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.020000	0.592040	-36(CCTTATATGGTA,+,0.00)
mm_94176.1	chr10	128891771	128891971	-	1	NA	NA	NA	-153	NM_010272	14561	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	0.140000	0.810945	-35(GGCTATAAAGGG,-,0.00)
mm_52008.1	chr6	93034862	93035062	+	1	NA	NA	NA	94380	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.005000	0.348259	77(GGCTAGAAAGGC,-,0.00)
mm_94795.1	chr11	22972181	22972381	+	1	NA	NA	NA	276	NM_011663	22183	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.060000	0.577114	
mm_126713.1	chr15	85336127	85336327	+	1	NA	NA	NA	-154	NM_016843	54138	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.080000	0.696517	
mm_64248.1	chr7	141704249	141704449	+	1	NA	NA	NA	14009	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.010000	0.447761	
mm_43927.1	chr5	144918986	144919186	+	1	NA	NA	NA	-22270	NR_106006	102465629		NR_106006	ENSMUSG00000098822	Mir7039	Gm27824|mmu-mir-7039	microRNA 7039	ncRNA	0.010000	0.552239	
mm_122358.1	chr14	39208681	39208881	-	1	NA	NA	NA	-263648	NR_131973	432842	Mm.352566	NR_131973		LOC432842	-	uncharacterized LOC432842	ncRNA	0.005000	0.467662	
mm_111405.1	chr12	91099613	91099813	-	1	NA	NA	NA	-10516	NR_030473	735273		NR_030473	ENSMUSG00000076118	Mir669c	Mirn669c|Mirn669c-1	microRNA 669c	ncRNA	0.000000	0.243781	
mm_126738.1	chr15	85671426	85671626	+	1	NA	NA	NA	-32247	NR_110483	102800312	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0.145000	0.756219	
mm_166521.1	chr6	24597590	24597790	+	1	NA	NA	NA	-81	NM_053098	93677	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	0.020000	0.532338	46(CGCTCTTAAAAG,-,0.00),47(GCTCTTAAAAGG,-,0.00)
mm_58638.1	chr7	6045083	6045283	+	1	NA	NA	NA	22	NM_031389	83564	Mm.247765	NM_031389	ENSMUSG00000034690	Nlrp4c	Nalp-alpha|Nalp4c|Rnh2	NLR family, pyrin domain containing 4C	protein-coding	0.020000	0.497512	
mm_159776.1	chr5	104077509	104077709	-	1	NA	NA	NA	-1	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.025000	0.427861	
mm_7321.1	chr1	100180126	100180326	-	1	NA	NA	NA	407461	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0.015000	0.462687	
mm_131065.1	chr16	4594650	4594850	+	1	NA	NA	NA	37	NM_031184	83396	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0.105000	0.771144	
mm_12505.1	chr2	71873248	71873448	+	1	NA	NA	NA	124	NM_172665	228026	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.135000	0.771144	
mm_91363.1	chr10	28986238	28986438	-	1	NA	NA	NA	-32	NM_026336	67719	Mm.440480	NM_026336	ENSMUSG00000015519	2310057J18Rik	2210414P04Rik|Leg1	RIKEN cDNA 2310057J18 gene	protein-coding	0.015000	0.487562	
mm_55895.1	chr6	83536451	83536651	-	1	NA	NA	NA	-300	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.010000	0.542289	44(CAGCTTATAAGG,-,0.00),46(GCTTATAAGGCC,+,0.00),84(TGGCCTAAAAGG,-,0.00)
mm_42873.1	chr5	122240695	122240895	+	1	NA	NA	NA	23665	NR_104441	654470	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.030000	0.572139	
mm_35838.1	chr4	48044866	48045066	-	1	NA	NA	NA	-339	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.105000	0.686567	
mm_50143.1	chr6	41543359	41543559	+	1	NA	NA	NA	21683	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.055000	0.592040	
mm_48453.1	chr5	140760175	140760375	-	1	NA	NA	NA	36148	NM_173405	231842	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.035000	0.497512	
mm_62650.1	chr7	107685469	107685669	+	1	NA	NA	NA	72463	NM_001205227	320635	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	0.010000	0.532338	73(GGCCATTTAAGC,-,0.00),75(CCATTTAAGCAG,+,0.00)
mm_123882.1	chr14	72709701	72709901	-	1	NA	NA	NA	202	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.115000	0.736318	
mm_70849.1	chr8	23446856	23447056	+	1	NA	NA	NA	35454	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding	0.015000	0.462687	
mm_21327.1	chr2	157101218	157101418	-	1	NA	NA	NA	14263	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.020000	0.507463	
mm_133426.1	chr16	87454925	87455125	+	1	NA	NA	NA	40	NM_024258	74112	Mm.152941	NM_024258	ENSMUSG00000025616	Usp16	1200004E02Rik|2810483I07Rik|6330514E22Rik|UBPM	ubiquitin specific peptidase 16	protein-coding	0.120000	0.721393	
mm_87892.1	chr10	61959505	61959705	+	1	NA	NA	NA	19503	NM_001304757	12817	Mm.300931	NM_007731	ENSMUSG00000058806	Col13a1	-	collagen, type XIII, alpha 1	protein-coding	0.020000	0.537313	
mm_91188.1	chr10	21125870	21126070	-	1	NA	NA	NA	35014	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.000000	0.253731	
mm_131030.1	chr16	3744017	3744217	+	1	NA	NA	NA	18	NM_148924	74120	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.095000	0.626866	
mm_23918.1	chr3	83046603	83046803	+	1	NA	NA	NA	3160	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.025000	0.557214	
mm_164593.1	chr17	27354702	27354902	+	1	NA	NA	NA	-936	NR_106076	102465701		NR_106076	ENSMUSG00000106578	Mir7217	mmu-mir-7217	microRNA 7217	ncRNA	0.025000	0.437811	40(TCCCTTTTAAGG,-,0.00),41(CCCTTTTAAGGA,-,0.00),42(CCTTTTAAGGAG,+,0.00)
mm_147783.1	chr18	61626340	61626540	-	1	NA	NA	NA	-13213	NR_045420	545261	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0.020000	0.527363	
mm_3830.1	chr1	159608665	159608865	+	1	NA	NA	NA	84996	NM_022312	21960	Mm.44701	NM_022312	ENSMUSG00000015829	Tnr	J1-tenascin|TN-R|janusin|restrictin	tenascin R	protein-coding	0.000000	0.373134	
mm_86373.1	chr9	123807654	123807854	-	1	NA	NA	NA	1277	NM_030712	80901	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.000000	0.363184	
mm_81398.1	chr9	109007466	109007666	+	1	NA	NA	NA	15664	NM_173019	270198	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0.020000	0.562189	
mm_43733.1	chr5	139791431	139791631	+	1	NA	NA	NA	-5	NM_010757	17135	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0.155000	0.696517	
mm_160763.1	chr10	93890103	93890303	-	1	NA	NA	NA	999	NM_019648	56307	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	0.075000	0.522388	
mm_44661.1	chr5	28458850	28459050	-	1	NA	NA	NA	-8034	NR_015562	654796	Mm.57202	NR_015562	ENSMUSG00000097726	9530036O11Rik	-	RIKEN cDNA 9530036O11Rik	ncRNA	0.035000	0.572139	
mm_86247.1	chr9	121314706	121314906	-	1	NA	NA	NA	-37634	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.005000	0.532338	
mm_53859.1	chr6	149309452	149309652	+	1	NA	NA	NA	138	NM_001289662	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.125000	0.726368	
mm_43607.1	chr5	137928201	137928401	+	1	NA	NA	NA	-6682	NM_007819	13113	Mm.289886	NM_007819	ENSMUSG00000029727	Cyp3a13	IIIAm2	cytochrome P450, family 3, subfamily a, polypeptide 13	protein-coding	0.035000	0.552239	
mm_30080.1	chr3	138090955	138091155	-	1	NA	NA	NA	-23667	NR_037975	329763	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA	0.035000	0.492537	
mm_102704.1	chr11	66526477	66526677	-	1	NA	NA	NA	-451	NM_001034874	380702	Mm.351764	NM_001034874	ENSMUSG00000053930	Shisa6	Gm879|ckamp52	shisa family member 6	protein-coding	0.135000	0.746269	
mm_169184.1	chr13	65896815	65897015	-	1	NA	NA	NA	-216538	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.010000	0.497512	
mm_38486.1	chr4	140774104	140774304	-	1	NA	NA	NA	-1	NM_011061	18602	Mm.250358	NM_011061	ENSMUSG00000025330	Padi4	Pad4|Pdi4	peptidyl arginine deiminase, type IV	protein-coding	0.055000	0.691542	-33(CACTATAAAGGA,-,0.00)
mm_20369.1	chr2	128428982	128429182	-	1	NA	NA	NA	269	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.020000	0.527363	
mm_145509.1	chr18	60391964	60392164	+	1	NA	NA	NA	16035	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.015000	0.388060	
mm_99639.1	chr11	105244075	105244275	+	1	NA	NA	NA	-48471	NM_008626	17534	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0.000000	0.353234	
mm_105132.1	chr11	101424553	101424753	-	1	NA	NA	NA	-432	NM_172566	217201	Mm.305941	NM_172566	ENSMUSG00000035007	Rundc1	AW125546|D930024B17	RUN domain containing 1	protein-coding	0.025000	0.517413	-68(TACCATATAAGG,-,0.00),-66(CCATATAAGGAG,+,0.00)
mm_76705.1	chr8	94587986	94588186	-	1	NA	NA	NA	13640	NM_028221	102122	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	0.025000	0.422886	
mm_21688.1	chr2	164443086	164443286	-	1	NA	NA	NA	2	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.085000	0.696517	-34(GCCTATAAGAAG,-,0.00)
mm_14897.1	chr2	149830722	149830922	+	1	NA	NA	NA	39	NM_001085521	433485	Mm.330649	NM_001085521	ENSMUSG00000074736	Syndig1	AW123113|DSPC2|Gm14134|H2C20orf39|OTTMUSG00000015750|Tmem90b	synapse differentiation inducing 1	protein-coding	0.120000	0.766169	
mm_94518.1	chr11	8722555	8722755	+	1	NA	NA	NA	-58120	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.000000	0.432836	
mm_11358.1	chr2	30925369	30925569	+	1	NA	NA	NA	-22172	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.010000	0.532338	
mm_91499.1	chr10	37135970	37136170	-	1	NA	NA	NA	2856	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.060000	0.512438	
mm_138759.1	chr17	37050701	37050901	+	1	NA	NA	NA	4835	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.060000	0.731343	
mm_40964.1	chr5	76995680	76995880	+	1	NA	NA	NA	-8275	NM_206935	384185	Mm.451858	NM_206935	ENSMUSG00000063820	Arl9	1700110A09Rik	ADP-ribosylation factor-like 9	protein-coding	0.020000	0.427861	31(GTCTCTAAAAGT,-,0.00)
mm_76539.1	chr8	87960554	87960754	-	1	NA	NA	NA	-1059	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	0.100000	0.686567	
mm_152027.1	chr19	6067730	6067930	-	1	NA	NA	NA	20	NM_028454	73166	Mm.489613	NM_028454	ENSMUSG00000024799	Tm7sf2	3110041O18Rik|ANG1|C14SR|Dhcr14	transmembrane 7 superfamily member 2	protein-coding	0.050000	0.577114	-28(GTCCATTTAAAG,-,0.00),-26(CCATTTAAAGAT,+,0.00)
mm_126276.1	chr15	79208895	79209095	+	1	NA	NA	NA	-20178	NM_008837	18693	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	0.035000	0.616915	
mm_9434.1	chr1	172513857	172514057	-	1	NA	NA	NA	-7173	NM_027972	71870	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	0.025000	0.512438	-30(CCCTTTCAAGAC,+,0.00)
mm_122461.1	chr14	45477754	45477954	-	1	NA	NA	NA	52211	NM_146054	218952	Mm.210018	NM_146054	ENSMUSG00000037712	Fermt2	AA960555|Kindlin-2|Mig2|Plekhc1	fermitin family member 2	protein-coding	0.030000	0.522388	
mm_164868.1	chr18	56546734	56546934	-	1	NA	NA	NA	8695	NR_106160	102465790		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	0.015000	0.398010	
mm_147586.1	chr18	56505537	56505737	-	1	NA	NA	NA	-32502	NR_106160	102465790		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	0.020000	0.512438	
mm_109964.1	chr12	12493024	12493224	-	1	NA	NA	NA	-100649	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	0.000000	0.417910	-100(GTCCCTATAAAC,-,0.00)
mm_22815.1	chr3	27188353	27188553	+	1	NA	NA	NA	5449	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.005000	0.487562	
mm_117276.1	chr13	65112788	65112988	-	1	NA	NA	NA	94	NM_001083901	66631	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	0.080000	0.626866	
mm_125314.1	chr15	38198943	38199143	+	1	NA	NA	NA	-20160	NM_008757	18285	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0.015000	0.572139	
mm_4130.1	chr1	170308792	170308992	+	1	NA	NA	NA	31	NM_001039593	76925	Mm.33631	NM_001039593	ENSMUSG00000042800	1700015E13Rik	-	RIKEN cDNA 1700015E13 gene	protein-coding	0.035000	0.552239	
mm_102068.1	chr11	52257701	52257901	-	1	NA	NA	NA	24794	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.005000	0.542289	
mm_23294.1	chr3	52186493	52186693	+	1	NA	NA	NA	-81587	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.015000	0.477612	
mm_51746.1	chr6	87378034	87378234	+	1	NA	NA	NA	4769	NM_025467	66284	Mm.46446	NM_025467	ENSMUSG00000030049	Gkn2	1810036H07Rik|Bricd1b	gastrokine 2	protein-coding	0.025000	0.467662	
mm_13372.1	chr2	103583498	103583698	+	1	NA	NA	NA	17288	NM_178890	99382	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.005000	0.512438	
mm_154024.1	chr19	53390470	53390670	-	1	NA	NA	NA	3	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	0.115000	0.661692	
mm_65339.1	chr7	24980016	24980216	-	1	NA	NA	NA	-7388	NM_010261	14470	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.010000	0.517413	
mm_132913.1	chr16	48994118	48994318	+	1	NA	NA	NA	30	NM_172616	224171	Mm.24491	NM_172616	ENSMUSG00000033031	C330027C09Rik	AA408511|AU018569|Cip2a|Kiaa1524	RIKEN cDNA C330027C09 gene	protein-coding	0.075000	0.616915	
mm_151282.1	chr19	55264386	55264586	+	1	NA	NA	NA	11117	NM_027976	433256	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.010000	0.527363	
mm_57643.1	chr6	128430484	128430684	-	1	NA	NA	NA	-5674	NM_133927	101142	Mm.31345	NM_133927	ENSMUSG00000001518	Itfg2	2700050P07Rik|AI646725	integrin alpha FG-GAP repeat containing 2	protein-coding	0.010000	0.417910	
mm_74848.1	chr8	24595506	24595706	-	1	NA	NA	NA	60	NM_001293690	15930	Mm.392	NM_008324	ENSMUSG00000031551	Ido1	Ido|Indo	indoleamine 2,3-dioxygenase 1	protein-coding	0.040000	0.552239	
mm_6215.1	chr1	66839150	66839350	-	1	NA	NA	NA	-21655	NM_001122738	68691	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.005000	0.457711	
mm_146842.1	chr18	23041517	23041717	-	1	NA	NA	NA	36	NM_199024	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding	0.075000	0.721393	
mm_140690.1	chr17	13741575	13741775	-	1	NA	NA	NA	-18866	NM_010806	17356	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.015000	0.467662	88(GTATATAAAAGG,-,0.00)
mm_7490.1	chr1	121332427	121332627	-	1	NA	NA	NA	62	NM_178082	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.000000	0.402985	
mm_107950.1	chr12	72434546	72434746	+	1	NA	NA	NA	-7220	NM_001142728	78257	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	0.015000	0.447761	
mm_118653.1	chr14	21750475	21750675	+	1	NA	NA	NA	44	NM_026283	67630	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	0.110000	0.736318	
mm_96773.1	chr11	69935774	69935974	+	1	NA	NA	NA	-25	NM_016875	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.150000	0.810945	
mm_169185.1	chr13	65950226	65950426	-	1	NA	NA	NA	-163127	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.005000	0.482587	
mm_69245.1	chr7	127807215	127807415	-	1	NA	NA	NA	6706	NM_001040684	101502	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	0.015000	0.547264	
mm_87526.1	chr10	53337642	53337842	+	1	NA	NA	NA	56	NM_001141927	18821	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0.020000	0.457711	
mm_58767.1	chr7	15881606	15881806	+	1	NA	NA	NA	-911	NR_038092	546024	Mm.259041	NM_001033638	ENSMUSG00000074365	Crxos	AA606869|AY590891|Crxos1|Egam1	cone-rod homeobox, opposite strand	protein-coding	0.015000	0.482587	
mm_75354.1	chr8	45024661	45024861	-	1	NA	NA	NA	40657	NR_033588	434310	Mm.334512	NR_033588	ENSMUSG00000066158	AY512931	-	cDNA sequence AY512931	ncRNA	0.030000	0.477612	
mm_124260.1	chr14	102977858	102978058	-	1	NA	NA	NA	4674	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.020000	0.407960	
mm_84549.1	chr9	67573107	67573307	-	1	NA	NA	NA	-13504	NM_001081242	70549	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	0.020000	0.487562	
mm_41909.1	chr5	105591128	105591328	+	1	NA	NA	NA	71757	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.005000	0.522388	
mm_121505.1	chr14	121938917	121939117	+	1	NA	NA	NA	-23243	NM_182806	110168	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	0.010000	0.457711	
mm_27601.1	chr3	59153395	59153595	-	1	NA	NA	NA	-3	NM_001287119	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.015000	0.447761	
mm_19933.1	chr2	116065581	116065781	-	1	NA	NA	NA	-623	NM_010825	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.100000	0.621891	
mm_79986.1	chr9	66978230	66978430	+	1	NA	NA	NA	-2846	NM_030717	80907	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0.000000	0.452736	
mm_51045.1	chr6	65625080	65625280	+	1	NA	NA	NA	34782	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.000000	0.293532	
mm_157266.1	chrX	19206282	19206482	-	1	NA	NA	NA	-59411	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.000000	0.432836	
mm_43465.1	chr5	136692925	136693125	+	1	NA	NA	NA	-121	NM_001303019	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.015000	0.507463	
mm_18238.1	chr2	52151333	52151533	-	1	NA	NA	NA	78596	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.010000	0.402985	
mm_133609.1	chr16	91506103	91506303	+	1	NA	NA	NA	20988	NM_010508	15975	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	CD118|Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.020000	0.462687	
mm_73351.1	chr8	105427560	105427760	+	1	NA	NA	NA	20	NM_001170789	270091	Mm.212709	NM_001033371	ENSMUSG00000054320	Lrrc36	BC036564	leucine rich repeat containing 36	protein-coding	0.040000	0.487562	
mm_66638.1	chr7	45570975	45571175	-	1	NA	NA	NA	-204	NM_001243052	12036	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.035000	0.502488	
mm_446.1	chr1	34866090	34866290	+	1	NA	NA	NA	16231	NM_145516	226971	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.030000	0.567164	
mm_171717.1	chr4	82744410	82744610	-	1	NA	NA	NA	115151	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0.010000	0.338308	
mm_4033.1	chr1	165774179	165774379	+	1	NA	NA	NA	10499	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.035000	0.621891	
mm_121070.1	chr14	96205595	96205795	+	1	NA	NA	NA	313339	NM_053105	93688	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding	0.005000	0.427861	
mm_21243.1	chr2	156173083	156173283	-	1	NA	NA	NA	6397	NM_001291115	170791	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.005000	0.348259	
mm_72362.1	chr8	80496203	80496403	+	1	NA	NA	NA	2258	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.000000	0.393035	
mm_62872.1	chr7	114745579	114745779	+	1	NA	NA	NA	-87	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	0.075000	0.661692	
mm_43063.1	chr5	124327989	124328189	+	1	NA	NA	NA	0	NM_028310	72650	Mm.121658	NM_028310	ENSMUSG00000047635	2810006K23Rik	-	RIKEN cDNA 2810006K23 gene	protein-coding	0.065000	0.611940	
mm_142887.1	chr17	51832545	51832745	-	1	NA	NA	NA	2	NM_009122	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.125000	0.726368	-33(CCCTTTAAACGC,+,0.00),-32(CCTTTAAACGCC,+,0.00)
mm_95511.1	chr11	52004166	52004366	+	1	NA	NA	NA	45	NM_001166653	213084	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	0.090000	0.671642	
mm_26576.1	chr3	146894231	146894431	+	1	NA	NA	NA	41964	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.025000	0.368159	23(CTTTTTAAAGTT,+,0.00)
mm_139234.1	chr17	47732336	47732536	+	1	NA	NA	NA	-4601	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.040000	0.557214	
mm_6396.1	chr1	72860202	72860402	-	1	NA	NA	NA	14563	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.030000	0.537313	
mm_43775.1	chr5	141847922	141848122	+	1	NA	NA	NA	-553475	NM_199068	17425	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf	forkhead box K1	protein-coding	0.015000	0.402985	
mm_87577.1	chr10	56388887	56389087	+	1	NA	NA	NA	11687	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.005000	0.358209	
mm_34498.1	chr4	148601889	148602089	+	1	NA	NA	NA	-555	NM_010767	17175	Mm.378962	NM_010767	ENSMUSG00000028979	Masp2	MASP-2|MAp19	mannan-binding lectin serine peptidase 2	protein-coding	0.010000	0.507463	
mm_111847.1	chr12	107938697	107938897	-	1	NA	NA	NA	64617	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.005000	0.422886	
mm_84179.1	chr9	59949995	59950195	-	1	NA	NA	NA	-16	NM_013708	23958	Mm.103641	NM_013708	ENSMUSG00000032292	Nr2e3	A930035N01Rik|PNR|RNR|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding	0.020000	0.542289	
mm_57510.1	chr6	125481620	125481820	-	1	NA	NA	NA	13035	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.000000	0.427861	
mm_166827.1	chr7	18567455	18567655	-	1	NA	NA	NA	-250	NM_001037168	545925	Mm.440302	NM_001037168	ENSMUSG00000070797	Psg27	EG545925|cea15	pregnancy-specific glycoprotein 27	protein-coding	0.000000	0.497512	
mm_36372.1	chr4	76536313	76536513	-	1	NA	NA	NA	-1258127	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.000000	0.427861	
mm_95508.1	chr11	52000820	52001020	+	1	NA	NA	NA	-454	NM_009458	22210	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	2610301N02Rik|E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0.020000	0.507463	
mm_159432.1	chr3	113356420	113356620	-	1	NA	NA	NA	0	NM_001042711	109959	Mm.275426	NM_001042711	ENSMUSG00000074268	Amy2a5	1810008N23Rik|Amy-2|Amy2|mAmy2-2	amylase 2a5	protein-coding	0.015000	0.383085	
mm_95986.1	chr11	58982076	58982276	+	1	NA	NA	NA	4083	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.040000	0.636816	
mm_60541.1	chr7	44480396	44480596	+	1	NA	NA	NA	-4021	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.472637	
mm_157347.1	chrX	36989369	36989569	-	1	NA	NA	NA	226	NM_001177324	56526	Mm.260036	NM_019942	ENSMUSG00000050379	Sept6	2810035H17Rik|C920001C06Rik|Sep6|mKIAA0128	septin 6	protein-coding	0.065000	0.636816	
mm_52129.1	chr6	97944170	97944370	+	1	NA	NA	NA	14453	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.328358	
mm_132963.1	chr16	50528967	50529167	+	1	NA	NA	NA	565	NR_040379	619312	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.135000	0.786070	
mm_119660.1	chr14	52140898	52141098	+	1	NA	NA	NA	30095	NM_023879	77945	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	0.025000	0.552239	57(GTTTTTAGAGTC,+,0.00)
mm_94339.1	chr11	4729763	4729963	+	1	NA	NA	NA	16915	NM_138948	192650	Mm.207056	NM_138948	ENSMUSG00000009075	Cabp7	-	calcium binding protein 7	protein-coding	0.040000	0.597015	
mm_55976.1	chr6	85868962	85869162	-	1	NA	NA	NA	75	NM_053096	93673	Mm.24251	NM_053096	ENSMUSG00000033634	Nat8f2	Cml2	N-acetyltransferase 8 (GCN5-related) family member 2	protein-coding	0.005000	0.487562	
mm_150178.1	chr19	32619888	32620088	+	1	NA	NA	NA	-17	NM_011864	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.000000	0.457711	
mm_12686.1	chr2	75900598	75900798	+	1	NA	NA	NA	37764	NM_028235	72421	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	0.005000	0.323383	
mm_85861.1	chr9	110747085	110747285	-	1	NA	NA	NA	-40	NM_011199	19228	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.010000	0.547264	49(TCTTTTCAAGCC,+,0.00)
mm_142710.1	chr17	47888104	47888304	-	1	NA	NA	NA	36428	NM_028767	74123	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.030000	0.626866	
mm_119976.1	chr14	55560839	55561039	+	1	NA	NA	NA	16	NM_001199009	28199	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.040000	0.507463	
mm_116254.1	chr13	34002698	34002898	-	1	NA	NA	NA	-4	NM_001243192	20719	Mm.252210	NM_009254	ENSMUSG00000060147	Serpinb6a	4930482L21Rik|D330015H01Rik|PI-6|Serpinb6|Spi3|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6a	protein-coding	0.125000	0.661692	
mm_142909.1	chr17	52349956	52350156	-	1	NA	NA	NA	-252653	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.020000	0.497512	
mm_19235.1	chr2	84714964	84715164	-	1	NA	NA	NA	100	NM_144887	228136	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0.205000	0.810945	
mm_155256.1	chrX	57224024	57224224	+	1	NA	NA	NA	11981	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.015000	0.542289	
mm_87336.1	chr10	43319211	43319411	+	1	NA	NA	NA	97825	NM_001168289	71365	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding	0.025000	0.547264	
mm_28969.1	chr3	101012020	101012220	-	1	NA	NA	NA	17375	NM_001167906	630146	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0.045000	0.532338	
mm_48925.1	chr6	4508482	4508682	+	1	NA	NA	NA	2964	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.010000	0.462687	
mm_121589.1	chr14	7843014	7843214	-	1	NA	NA	NA	25157	NM_134080	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.015000	0.542289	
mm_56543.1	chr6	99726247	99726447	-	1	NA	NA	NA	45	NM_001037539	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.130000	0.726368	-94(GCCTTTATAACC,+,0.00)
mm_22538.1	chr3	8671244	8671444	+	1	NA	NA	NA	-4306	NM_010423	15213	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.015000	0.388060	
mm_33987.1	chr4	137719605	137719805	+	1	NA	NA	NA	-4756	NR_138592	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.015000	0.557214	
mm_36133.1	chr4	59331679	59331879	-	1	NA	NA	NA	71728	NR_105031	101055769	Mm.421401	NR_105031		Gm12596	OTTMUSG00000007649	predicted gene 12596	ncRNA	0.030000	0.616915	
mm_150664.1	chr19	42019301	42019501	+	1	NA	NA	NA	-16637	NM_020033	56642	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	0.000000	0.432836	
mm_123394.1	chr14	63416979	63417179	-	1	NA	NA	NA	108	NM_007549	12143	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.015000	0.572139	
mm_65504.1	chr7	25733002	25733202	-	1	NA	NA	NA	-14049	NM_028771	52132	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.035000	0.532338	
mm_103516.1	chr11	76778898	76779098	-	1	NA	NA	NA	-15443	NM_016810	53334	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	0.005000	0.318408	
mm_4118.1	chr1	168430308	168430508	+	1	NA	NA	NA	1761	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.005000	0.427861	69(CCCTTTATAAAG,+,0.00),69(CCCTTTATAAAG,-,0.00),71(CTTTATAAAGGA,+,0.00)
mm_166893.1	chr7	28156922	28157122	+	1	NA	NA	NA	-12726	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.040000	0.587065	
mm_3073.1	chr1	134270261	134270461	+	1	NA	NA	NA	-19643	NM_031189	17928	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	0.030000	0.487562	
mm_63659.1	chr7	129591438	129591638	+	1	NA	NA	NA	-325	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.010000	0.393035	
mm_67313.1	chr7	79477276	79477476	-	1	NA	NA	NA	-11103	NM_017462	18975	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	0.015000	0.577114	
mm_54276.1	chr6	29164892	29165092	-	1	NA	NA	NA	-268	NM_133925	68272	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	0.020000	0.402985	
mm_138399.1	chr17	35058253	35058453	+	1	NA	NA	NA	-682	NM_001190449	51793	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	0.020000	0.497512	
mm_138087.1	chr17	33997416	33997616	+	1	NA	NA	NA	2817	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.000000	0.502488	
mm_101626.1	chr11	35980500	35980700	-	1	NA	NA	NA	-511	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.120000	0.736318	
mm_27595.1	chr3	59130989	59131189	-	1	NA	NA	NA	29	NM_001287122	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.010000	0.427861	
mm_81204.1	chr9	107569047	107569247	+	1	NA	NA	NA	-16	NM_010489	15587	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	0.090000	0.686567	-57(GATTCTTAAAGG,-,0.00),-54(TCTTAAAGGGCC,+,0.00)
mm_28652.1	chr3	95228794	95228994	-	1	NA	NA	NA	-49	NM_001038708	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.140000	0.781095	
mm_163159.1	chr11	83885693	83885893	+	1	NA	NA	NA	32833	NM_001291269	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.015000	0.437811	
mm_277.1	chr1	21249646	21249846	+	1	NA	NA	NA	9161	NM_010356	14859	Mm.394593	NM_010356	ENSMUSG00000025934	Gsta3	Gst2-3	glutathione S-transferase, alpha 3	protein-coding	0.020000	0.512438	-30(CTTTTAAGAGCA,+,0.00)
mm_113081.1	chr13	23839322	23839522	+	1	NA	NA	NA	-12	NM_001164743	105355	Mm.27038	NM_134069	ENSMUSG00000036083	Slc17a3	AW261723|Npt4	solute carrier family 17 (sodium phosphate), member 3	protein-coding	0.010000	0.432836	
mm_126109.1	chr15	78250795	78250995	+	1	NA	NA	NA	6084	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.040000	0.582090	
mm_130337.1	chr15	97731120	97731320	-	1	NA	NA	NA	185	NM_001168693	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.025000	0.547264	-34(CCTTTTATAGTG,+,0.00)
mm_109947.1	chr12	11326403	11326603	-	1	NA	NA	NA	26616	NR_106136	102465775		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.015000	0.447761	
mm_67771.1	chr7	96946938	96947138	-	1	NA	NA	NA	-4489	NM_153591	244141	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.000000	0.512438	-36(CACTATAAAAGG,-,0.00),-4(CTCTCTTTAAGC,-,0.00),-2(CTCTTTAAGCCC,+,0.00)
mm_103322.1	chr11	73324529	73324729	-	1	NA	NA	NA	8	NM_023113	11484	Mm.293574	NM_023113	ENSMUSG00000020774	Aspa	Acy-2|Acy2|nur7	aspartoacylase	protein-coding	0.000000	0.393035	
mm_133752.1	chr16	94420211	94420411	+	1	NA	NA	NA	-49296	NM_001159617	56176	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0.025000	0.472637	-42(CAGTTTAAGAGG,-,0.00)
mm_25168.1	chr3	103073921	103074121	+	1	NA	NA	NA	7	NM_001033303	229665	Mm.331272	NM_001033303	ENSMUSG00000070385	Ampd1	AI553520|Ampd-1	adenosine monophosphate deaminase 1	protein-coding	0.005000	0.457711	-100(AGCTATAAATAG,-,0.00)
mm_103355.1	chr11	74832127	74832327	-	1	NA	NA	NA	1303	NM_010813	17428	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.090000	0.681592	
mm_113494.1	chr13	37415407	37415607	+	1	NA	NA	NA	70162	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.010000	0.348259	
mm_155531.1	chrX	74299858	74300058	+	1	NA	NA	NA	2861	NM_018794	54411	Mm.21961	NM_018794	ENSMUSG00000019087	Atp6ap1	16A|AC45|AI316502|AW108110|Atp6ip1|Atp6s1|C7-1|CF2|VATPS1|XAP-3|mFLJ00383	ATPase, H+ transporting, lysosomal accessory protein 1	protein-coding	0.000000	0.422886	-42(CTCTTTAGAGGC,+,0.00)
mm_131841.1	chr16	22961037	22961237	+	1	NA	NA	NA	10065	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.030000	0.616915	
mm_34512.1	chr4	148889320	148889520	+	1	NA	NA	NA	85028	NM_027195	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.010000	0.532338	
mm_168181.1	chr10	58464365	58464565	+	1	NA	NA	NA	17613	NM_011240	19386	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0.015000	0.373134	
mm_162432.1	chr1	96507009	96507209	+	1	NA	NA	NA	155464	NR_040478	75159	Mm.243854	NR_040478	ENSMUSG00000100589	4930533P14Rik	-	RIKEN cDNA 4930533P14 gene	ncRNA	0.000000	0.353234	-7(TGGTATATAAGC,-,0.00)
mm_60270.1	chr7	43842147	43842347	+	1	NA	NA	NA	-22	NM_026806	68668	Mm.458122	NM_026806	ENSMUSG00000074155	Klk5	1110030O19Rik	kallikrein related-peptidase 5	protein-coding	0.025000	0.557214	
mm_165336.1	chr2	116925370	116925570	+	1	NA	NA	NA	25318	NR_040335	320975	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.025000	0.507463	
mm_150111.1	chr19	29605659	29605859	+	1	NA	NA	NA	42661	NM_001081213	226090	Mm.267131	NM_146098	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	0.000000	0.273632	
mm_88754.1	chr10	80308181	80308381	+	1	NA	NA	NA	6461	NM_011789	23805	Mm.57247	NM_011789	ENSMUSG00000020135	Apc2	AI852447|APCL|R75424	adenomatosis polyposis coli 2	protein-coding	0.015000	0.557214	
mm_30335.1	chr3	151732198	151732398	-	1	NA	NA	NA	17661	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.010000	0.412935	
mm_158144.1	chrX	103460316	103460516	-	1	NA	NA	NA	22817	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.005000	0.398010	
mm_8560.1	chr1	155276279	155276479	-	1	NA	NA	NA	117676	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.010000	0.427861	
mm_64630.1	chr7	3693067	3693267	-	1	NA	NA	NA	358	NM_029934	77582	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	0.075000	0.542289	
mm_4477.1	chr1	173420534	173420734	+	1	NA	NA	NA	30	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.010000	0.457711	
mm_157634.1	chrX	57176774	57176974	-	1	NA	NA	NA	-23763	NR_038463	100502842	Mm.164733	NR_038463	ENSMUSG00000085808	Gm14718	OTTMUSG00000017790	predicted gene 14718	ncRNA	0.005000	0.293532	45(ACCTCTTTAAGG,-,0.00)
mm_133732.1	chr16	93832165	93832365	+	1	NA	NA	NA	144	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.115000	0.706468	
mm_70293.1	chr8	3665863	3666063	+	1	NA	NA	NA	201	NM_026985	69189	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0.010000	0.527363	-36(CCCCATAAATGC,-,0.00)
mm_150907.1	chr19	45998037	45998237	+	1	NA	NA	NA	351	NM_198296	71617	Mm.210949	NM_198296	ENSMUSG00000039901	9130011E15Rik	AI431055|AW050122	RIKEN cDNA 9130011E15 gene	protein-coding	0.115000	0.726368	
mm_94031.1	chr10	127885133	127885333	-	1	NA	NA	NA	3466	NM_017473	54150	Mm.6696	NM_017473	ENSMUSG00000040134	Rdh7	AI194929|CRAD2	retinol dehydrogenase 7	protein-coding	0.005000	0.318408	
mm_90743.1	chr10	5368356	5368556	-	1	NA	NA	NA	119858	NM_001347711	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.020000	0.497512	
mm_171008.1	chr2	82412241	82412441	+	1	NA	NA	NA	358683	NM_175513	241514	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding	0.050000	0.532338	-29(CTCCATAAAAGG,-,0.00)
mm_133735.1	chr16	93883825	93884025	+	1	NA	NA	NA	24	NM_028083	110749	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	0.110000	0.701493	
mm_10205.1	chr2	4994372	4994572	+	1	NA	NA	NA	17872	NM_001305259	70024	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	0.005000	0.517413	
mm_21599.1	chr2	164237772	164237972	-	1	NA	NA	NA	469	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.030000	0.467662	
mm_158138.1	chrX	103186587	103186787	-	1	NA	NA	NA	-23	NM_008671	17954	Mm.388694	NM_008671	ENSMUSG00000082229	Nap1l2	Bpx	nucleosome assembly protein 1-like 2	protein-coding	0.030000	0.517413	
mm_30347.1	chr3	151745457	151745657	-	1	NA	NA	NA	4402	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.010000	0.442786	35(TCTTAAAGGGCC,+,0.00)
mm_52895.1	chr6	122628288	122628488	+	1	NA	NA	NA	1964	NM_139218	73708	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.015000	0.512438	
mm_44658.1	chr5	28413717	28413917	-	1	NA	NA	NA	-53167	NR_015562	654796	Mm.57202	NR_015562	ENSMUSG00000097726	9530036O11Rik	-	RIKEN cDNA 9530036O11Rik	ncRNA	0.020000	0.452736	
mm_28358.1	chr3	89764514	89764714	-	1	NA	NA	NA	18	NM_009602	11444	Mm.35088	NM_009602	ENSMUSG00000027950	Chrnb2	Acrb-2|Acrb2|C030030P04Rik|[b]2-nAchR	cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)	protein-coding	0.060000	0.651741	
mm_22666.1	chr3	14872053	14872253	+	1	NA	NA	NA	8615	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.020000	0.353234	
mm_29701.1	chr3	123117162	123117362	-	1	NA	NA	NA	-82275	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.030000	0.557214	
mm_45928.1	chr5	89445256	89445456	-	1	NA	NA	NA	12542	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.010000	0.472637	-66(TCCTATATAGCA,+,0.00)
mm_95329.1	chr11	46750425	46750625	+	1	NA	NA	NA	14	NM_001166631	171283	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	0.005000	0.388060	11(GGGCTTAAAAGT,-,0.00)
mm_22406.1	chr2	181287929	181288129	-	1	NA	NA	NA	-63	NM_198169	229004	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.160000	0.741294	
mm_45414.1	chr5	66416762	66416962	-	1	NA	NA	NA	-79197	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.015000	0.427861	
mm_16330.1	chr2	174327655	174327855	+	1	NA	NA	NA	-13	NM_001310083	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.095000	0.666667	-94(CGCTTTATAGGG,-,0.00),-92(CTTTATAGGGGC,+,0.00)
mm_32390.1	chr4	106615788	106615988	+	1	NA	NA	NA	1350	NM_183182	242602	Mm.235591	NM_183182	ENSMUSG00000054362	Lexm	-	lymphocyte expansion molecule	protein-coding	0.050000	0.567164	
mm_19439.1	chr2	91965416	91965616	-	1	NA	NA	NA	-1953	NM_138306	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.055000	0.676617	
mm_130637.1	chr15	100491753	100491953	-	1	NA	NA	NA	3386	NM_153407	207785	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	0.010000	0.313433	
mm_154948.1	chrX	36346107	36346307	+	1	NA	NA	NA	17798	NM_028894	74365	Mm.327654	NM_028894	ENSMUSG00000016239	Lonrf3	4932412G04Rik|5730439E01Rik|A830039N02Rik|AU023707|Rnf127	LON peptidase N-terminal domain and ring finger 3	protein-coding	0.005000	0.348259	
mm_149889.1	chr19	25406577	25406777	+	1	NA	NA	NA	-99029	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.020000	0.582090	
mm_71401.1	chr8	46310641	46310841	+	1	NA	NA	NA	-16070	NM_173789	234219	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	0.015000	0.467662	
mm_8694.1	chr1	157332298	157332498	-	1	NA	NA	NA	-79954	NR_027984	69953	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	0.000000	0.398010	65(TGGCCTTAAAGG,-,0.00),66(GGCCTTAAAGGC,-,0.00)
mm_59910.1	chr7	30414256	30414456	+	1	NA	NA	NA	568	NM_011662	22177	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0.015000	0.467662	
mm_38614.1	chr4	141932959	141933159	-	1	NA	NA	NA	-49933	NR_040672	545691	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037|OTTMUSG00000010113	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.020000	0.592040	
mm_31839.1	chr4	74013534	74013734	+	1	NA	NA	NA	31	NM_172869	242506	Mm.221597	NM_172869	ENSMUSG00000049122	Frmd3	4.1O|9430066I12Rik|EPB41L4O|P410	FERM domain containing 3	protein-coding	0.105000	0.686567	
mm_110634.1	chr12	57546034	57546234	-	1	NA	NA	NA	-13	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.130000	0.731343	
mm_4367.1	chr1	172082726	172082926	+	1	NA	NA	NA	-77	NM_021607	59287	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	0.090000	0.646766	
mm_16060.1	chr2	167871677	167871877	+	1	NA	NA	NA	-60550	NM_011201	19246	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.025000	0.502488	
mm_7866.1	chr1	132626946	132627146	-	1	NA	NA	NA	15812	NM_001160316	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	0.005000	0.432836	
mm_135611.1	chr16	52258368	52258568	-	1	NA	NA	NA	194613	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.020000	0.388060	
mm_54217.1	chr6	25809098	25809298	-	1	NA	NA	NA	28	NM_133931	101185	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	0.090000	0.582090	
mm_7909.1	chr1	133689855	133690055	-	1	NA	NA	NA	61	NM_172842	240754	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	0.020000	0.567164	
mm_42893.1	chr5	122396767	122396967	+	1	NA	NA	NA	4989	NM_019824	56378	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.030000	0.567164	
mm_91383.1	chr10	30623435	30623635	-	1	NA	NA	NA	-5169	NM_025798	66847	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	0.005000	0.323383	
mm_137146.1	chr17	23673517	23673717	+	1	NA	NA	NA	9	NM_181821	353502	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	0.080000	0.601990	
mm_117284.1	chr13	65990994	65991194	-	1	NA	NA	NA	-122359	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.010000	0.512438	
mm_17732.1	chr2	32495212	32495412	-	1	NA	NA	NA	-40047	NM_153560	98952	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.015000	0.477612	
mm_142165.1	chr17	36145848	36146048	-	1	NA	NA	NA	930	NR_033517	675325	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	0.065000	0.641791	
mm_167564.1	chr9	41206088	41206288	+	1	NA	NA	NA	33	NR_040392	78500	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	0.010000	0.442786	
mm_5403.1	chr1	33757591	33757791	-	1	NA	NA	NA	59	NM_145392	213539	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	0.135000	0.741294	
mm_75565.1	chr8	60329448	60329648	-	1	NA	NA	NA	-176576	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.010000	0.398010	
mm_89054.1	chr10	82879723	82879923	+	1	NA	NA	NA	13197	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.030000	0.512438	
mm_131001.1	chr15	103537874	103538074	-	1	NA	NA	NA	18	NM_021391	58200	Mm.143788	NM_021391	ENSMUSG00000022490	Ppp1r1a	0610038N18Rik|I-1	protein phosphatase 1, regulatory (inhibitor) subunit 1A	protein-coding	0.110000	0.756219	
mm_109639.1	chr12	112795925	112796125	+	1	NA	NA	NA	-12950	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.015000	0.572139	
mm_76030.1	chr8	76901916	76902116	-	1	NA	NA	NA	-492	NM_001083906	110784	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0.070000	0.636816	
mm_140481.1	chr17	3114458	3114658	-	1	NA	NA	NA	-414	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.105000	0.641791	
mm_85196.1	chr9	96731308	96731508	-	1	NA	NA	NA	267	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.045000	0.447761	
mm_105871.1	chr11	114795796	114795996	-	1	NA	NA	NA	-4	NM_028055	72014	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0.010000	0.557214	-33(TCCTATATAAGG,-,0.00)
mm_78018.1	chr9	13707177	13707377	+	1	NA	NA	NA	-41904	NM_023858	77116	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.005000	0.373134	
mm_41184.1	chr5	88318482	88318682	+	1	NA	NA	NA	1270	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.005000	0.353234	
mm_162898.1	chr10	112837652	112837852	+	1	NA	NA	NA	91274	NM_001033474	382423	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132|ENSMUSG00000074747	ataxin 7-like 3B	protein-coding	0.025000	0.447761	
mm_73414.1	chr8	106054507	106054707	+	1	NA	NA	NA	-4996	NM_010901	18021	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.020000	0.522388	-33(AACTTTAAAGGC,-,0.00)
mm_458.1	chr1	36274495	36274695	+	1	NA	NA	NA	-1170	NM_153408	214854	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.025000	0.562189	
mm_112191.1	chr12	113425276	113425476	-	1	NA	NA	NA	-64189	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.611940	
mm_88618.1	chr10	79854566	79854766	+	1	NA	NA	NA	234	NM_001283013	19205	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0.130000	0.671642	
mm_62356.1	chr7	100499175	100499375	+	1	NA	NA	NA	5917	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.015000	0.537313	
mm_70866.1	chr8	24818870	24819070	+	1	NA	NA	NA	5399	NM_001272058	11499	Mm.143889	NM_007401	ENSMUSG00000031554	Adam5	tMDC II|tMDCII	a disintegrin and metallopeptidase domain 5	protein-coding	0.005000	0.383085	
mm_22214.1	chr2	174294060	174294260	-	1	NA	NA	NA	1276	NR_002846	56802	Mm.125770	NR_002846	ENSMUSG00000086537	Nespas	Gnas-as|Nespos	neuroendocrine secretory protein antisense	ncRNA	0.010000	0.343284	
mm_64457.1	chr7	142660389	142660589	+	1	NA	NA	NA	782	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.045000	0.532338	59(GCCTCTAAAGGG,-,0.00),60(CCTCTAAAGGGC,+,0.00)
mm_88185.1	chr10	69993195	69993395	+	1	NA	NA	NA	67763	NM_009670	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.025000	0.487562	
mm_6104.1	chr1	64030196	64030396	-	1	NA	NA	NA	12205	NR_105864	102466760		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.005000	0.482587	
mm_116306.1	chr13	36734310	36734510	-	1	NA	NA	NA	67	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.035000	0.537313	
mm_58518.1	chr7	4137380	4137580	+	1	NA	NA	NA	424	NM_172736	232798	Mm.22831	NM_172736	ENSMUSG00000035545	Leng8	AW049671	leukocyte receptor cluster (LRC) member 8	protein-coding	0.080000	0.691542	
mm_4279.1	chr1	171628182	171628382	+	1	NA	NA	NA	13618	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.000000	0.452736	
mm_70977.1	chr8	27172640	27172840	+	1	NA	NA	NA	1906	NM_029423	75767	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.020000	0.457711	
mm_49149.1	chr6	11926674	11926874	+	1	NA	NA	NA	893	NM_001168382	75725	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	0.010000	0.422886	
mm_12152.1	chr2	61812466	61812666	+	1	NA	NA	NA	8113	NM_009322	21375	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.055000	0.552239	
mm_122955.1	chr14	54967969	54968169	-	1	NA	NA	NA	-718	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.005000	0.532338	
mm_30179.1	chr3	144205864	144206064	-	1	NA	NA	NA	-709	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.020000	0.472637	
mm_91732.1	chr10	45486328	45486528	-	1	NA	NA	NA	-16227	NM_001031772	380669	Mm.440328	NM_001031772	ENSMUSG00000063804	Lin28b	2810403D23Rik|D030047M17Rik|Lin-28.2	lin-28 homolog B (C. elegans)	protein-coding	0.160000	0.771144	
mm_1552.1	chr1	72942344	72942544	+	1	NA	NA	NA	-67579	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.010000	0.487562	85(CTATTTATACTC,+,0.00)
mm_13823.1	chr2	119237548	119237748	+	1	NA	NA	NA	288	NM_016907	20732	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	0.100000	0.676617	
mm_24106.1	chr3	88141899	88142099	+	1	NA	NA	NA	-373	NM_001310587	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.045000	0.557214	
mm_6639.1	chr1	79436159	79436359	-	1	NA	NA	NA	3831	NM_009129	20254	Mm.5038	NM_009129	ENSMUSG00000050711	Scg2	Chgc|SgII	secretogranin II	protein-coding	0.025000	0.452736	
mm_125233.1	chr15	34142863	34143063	+	1	NA	NA	NA	60244	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.005000	0.398010	
mm_136710.1	chr17	7926845	7927045	+	1	NA	NA	NA	945	NM_145968	72536	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik	T cell activation Rho GTPase activating protein	protein-coding	0.020000	0.462687	
mm_82419.1	chr9	14903662	14903862	-	1	NA	NA	NA	189	NM_176807	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.015000	0.567164	
mm_54547.1	chr6	36809981	36810181	-	1	NA	NA	NA	1280	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.030000	0.577114	
mm_144158.1	chr18	5603650	5603850	+	1	NA	NA	NA	-11313	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	0.010000	0.422886	
mm_96755.1	chr11	69908926	69909126	+	1	NA	NA	NA	-5166	NM_019726	56310	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953	G protein pathway suppressor 2	protein-coding	0.025000	0.542289	
mm_125278.1	chr15	36226117	36226317	+	1	NA	NA	NA	13947	NR_106173	102465888		NR_106173	ENSMUSG00000098457	Mir8097	Gm27497|mmu-mir-8097	microRNA 8097	ncRNA	0.000000	0.482587	
mm_42118.1	chr5	110867800	110868000	+	1	NA	NA	NA	-11903	NM_001267622	209683	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	0.010000	0.467662	
mm_56398.1	chr6	96166102	96166302	-	1	NA	NA	NA	3	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo	0.045000	0.557214	
mm_172165.1	chr6	44793012	44793212	+	1	NA	NA	NA	-266949	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.070000	0.502488	74(AACTTTAAATGG,-,0.00)
mm_103801.1	chr11	82908280	82908480	-	1	NA	NA	NA	15	NM_145431	217011	Mm.29176	NM_145431	ENSMUSG00000020692	Nle1	AL022765|BC018399|Nle|l11Jus1|l11Jus4	notchless homolog 1 (Drosophila)	protein-coding	0.135000	0.696517	
mm_107242.1	chr12	26479084	26479284	+	1	NA	NA	NA	9969	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.000000	0.412935	
mm_99106.1	chr11	100129202	100129402	+	1	NA	NA	NA	6647	NM_008469	16665	Mm.440010	NM_008469	ENSMUSG00000054146	Krt15	AI528832|K15|Krt1-15	keratin 15	protein-coding	0.000000	0.507463	-35(AACTATTTAAGG,-,0.00),-33(CTATTTAAGGGC,+,0.00)
mm_121493.1	chr14	121830892	121831092	+	1	NA	NA	NA	-33258	NM_134074	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.025000	0.467662	
mm_63213.1	chr7	126272415	126272615	+	1	NA	NA	NA	-104	NM_145587	104175	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.215000	0.845771	
mm_166390.1	chr5	134394756	134394956	+	1	NA	NA	NA	61406	NM_001081465	57080	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.040000	0.582090	
mm_145417.1	chr18	58555884	58556084	+	1	NA	NA	NA	-256	NM_001081072	225579	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0.030000	0.601990	
mm_84891.1	chr9	79792767	79792967	-	1	NA	NA	NA	563	NM_133718	69981	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	0.050000	0.562189	
mm_106771.1	chr12	4599659	4599859	+	1	NA	NA	NA	6751	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.010000	0.432836	17(CTTTTTAAAGTC,+,0.00)
mm_74769.1	chr8	20944654	20944854	-	1	NA	NA	NA	-6	NM_001012640	100503970	Mm.490241	NM_001012640	ENSMUSG00000079120	AY761185	-	cDNA sequence AY761185	protein-coding	0.005000	0.542289	-33(CCCTATAAATGC,+,0.00),-33(CCCTATAAATGC,-,0.00)
mm_135441.1	chr16	45408902	45409102	-	1	NA	NA	NA	51	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.050000	0.611940	
mm_12212.1	chr2	67318468	67318668	+	1	NA	NA	NA	-127434	NM_001083919	241431	Mm.261043	NM_001024618	ENSMUSG00000027022	Xirp2	2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2	xin actin-binding repeat containing 2	protein-coding	0.000000	0.293532	-66(GTCTATTTAGGC,-,0.00)
mm_158960.1	chr1	91366417	91366617	+	1	NA	NA	NA	87	NM_173395	227358	Mm.389157	NM_173395	ENSMUSG00000047443	Erfe	4832406C22|Fam132b|myonectin	erythroferrone	protein-coding	0.145000	0.736318	-95(CGCGTTATAAGG,-,0.00)
mm_133076.1	chr16	58726272	58726472	+	1	NA	NA	NA	-1538	NR_045518	224250	Mm.29482	NM_171826	ENSMUSG00000022744	Cldnd1	1110019C08Rik|AA407103|AI849195|AW489850|Cldn25	claudin domain containing 1	protein-coding	0.020000	0.487562	
mm_135908.1	chr16	67519414	67519614	-	1	NA	NA	NA	101394	NM_001347247	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.000000	0.278607	
mm_88873.1	chr10	81070046	81070246	+	1	NA	NA	NA	63	NM_022653	50492	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	0.120000	0.691542	
mm_69132.1	chr7	127026941	127027141	-	1	NA	NA	NA	-562	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.070000	0.731343	
mm_66170.1	chr7	33944202	33944402	-	1	NA	NA	NA	683	NM_178308	110187	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	0.005000	0.427861	
mm_130041.1	chr15	89074034	89074234	-	1	NA	NA	NA	1720	NR_040417	69120	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	0.020000	0.552239	51(GGCTTTTTGAGG,-,0.00)
mm_166389.1	chr5	134314857	134315057	-	1	NA	NA	NA	-197	NM_010365	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.100000	0.696517	
mm_170472.1	chr19	11121220	11121420	+	1	NA	NA	NA	9558	NM_027058	69369	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0.115000	0.716418	
mm_128749.1	chr15	64382954	64383154	-	1	NA	NA	NA	-135	NM_010026	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.050000	0.641791	
mm_76425.1	chr8	84977918	84978118	-	1	NA	NA	NA	730	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.080000	0.686567	
mm_143567.1	chr17	74294744	74294944	-	1	NA	NA	NA	19	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.095000	0.736318	
mm_5576.1	chr1	39551788	39551988	-	1	NA	NA	NA	-3048	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.025000	0.482587	
mm_3920.1	chr1	162223360	162223560	+	1	NA	NA	NA	92	NR_029796	387210		NR_029796	ENSMUSG00000065516	Mir214	Mirn214|mir-214|mmu-mir-214	microRNA 214	ncRNA	0.005000	0.542289	
mm_160366.1	chr8	23058179	23058379	+	1	NA	NA	NA	20	NR_102385	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.090000	0.651741	
mm_81647.1	chr9	110953338	110953538	+	1	NA	NA	NA	1893	NM_028838	74249	Mm.307615	NM_028838	ENSMUSG00000032495	Lrrc2	2400002D05Rik|4933431K03Rik	leucine rich repeat containing 2	protein-coding	0.015000	0.388060	
mm_66943.1	chr7	61982180	61982380	-	1	NA	NA	NA	23	NR_015599	320026	Mm.131850	NR_015599	ENSMUSG00000109321	A330076H08Rik	Mirh1	RIKEN cDNA A330076H08 gene	ncRNA	0.005000	0.527363	
mm_41004.1	chr5	80684191	80684391	+	1	NA	NA	NA	-336280	NM_001347367	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.005000	0.462687	-33(TCCCATAAAAGC,-,0.00)
mm_144053.1	chr17	90603462	90603662	-	1	NA	NA	NA	-147682	NM_001346959	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.005000	0.323383	
mm_6368.1	chr1	72242634	72242834	-	1	NA	NA	NA	-30427	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.010000	0.507463	
mm_120571.1	chr14	69040684	69040884	+	1	NA	NA	NA	11495	NM_009285	20855	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	0.000000	0.328358	
mm_40490.1	chr5	57716832	57717032	+	1	NA	NA	NA	987	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	0.040000	0.507463	
mm_141118.1	chr17	26090098	26090298	-	1	NA	NA	NA	-34	NM_011933	26378	Mm.292869	NM_011933	ENSMUSG00000036775	Decr2	-	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	protein-coding	0.050000	0.621891	
mm_49126.1	chr6	8544480	8544680	+	1	NA	NA	NA	24522	NM_001286729	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.000000	0.263682	-65(GTCTTGAAAAAG,-,0.00)
mm_107022.1	chr12	12827952	12828152	+	1	NA	NA	NA	113784	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.010000	0.472637	
mm_65843.1	chr7	29247833	29248033	-	1	NA	NA	NA	534	NM_028179	72275	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0.040000	0.631841	
mm_39389.1	chr5	13399254	13399454	+	1	NA	NA	NA	45	NM_009152	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.050000	0.562189	
mm_79612.1	chr9	58629006	58629206	+	1	NA	NA	NA	46866	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.010000	0.402985	
mm_60303.1	chr7	44071721	44071921	+	1	NA	NA	NA	19531	NM_020268	16619	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	0.000000	0.557214	-34(GGGTTTTAAAGT,-,0.00)
mm_26921.1	chr3	20249450	20249650	-	1	NA	NA	NA	-7369	NM_007753	12873	Mm.1135	NM_007753	ENSMUSG00000001865	Cpa3	MC-CPA	carboxypeptidase A3, mast cell	protein-coding	0.005000	0.358209	
mm_103792.1	chr11	82867250	82867450	-	1	NA	NA	NA	3394	NM_001164570	67338	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.000000	0.368159	
mm_71649.1	chr8	59825571	59825771	+	1	NA	NA	NA	22	NR_126087	75017	Mm.60775	NR_126087	ENSMUSG00000110406	4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA	0.005000	0.417910	
mm_8152.1	chr1	136674699	136674899	-	1	NA	NA	NA	-8597	NR_045324	100503460	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.045000	0.527363	
mm_113198.1	chr13	24943472	24943672	+	1	NA	NA	NA	420	NM_008156	14756	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0.020000	0.517413	
mm_90362.1	chr10	127165763	127165963	+	1	NA	NA	NA	32	NM_001244618	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.090000	0.661692	
mm_127962.1	chr15	11907106	11907306	-	1	NA	NA	NA	165	NM_001286395	18162	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	0.050000	0.592040	
mm_48523.1	chr5	142903305	142903505	-	1	NA	NA	NA	3349	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.020000	0.442786	-84(TTTTTAATAGTC,+,0.00)
mm_127850.1	chr15	7398317	7398517	-	1	NA	NA	NA	-22	NM_001289498	268780	Mm.203208	NM_178748	ENSMUSG00000042961	Egflam	5930412K08|AU040377	EGF-like, fibronectin type III and laminin G domains	protein-coding	0.090000	0.676617	
mm_108009.1	chr12	73584720	73584920	+	1	NA	NA	NA	24	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.105000	0.731343	
mm_149286.1	chr19	10634206	10634406	+	1	NA	NA	NA	73	NM_027913	71768	Mm.169261	NM_027913	ENSMUSG00000043789	Vwce	1300015B04Rik	von Willebrand factor C and EGF domains	protein-coding	0.055000	0.656716	
mm_169076.1	chr13	3110339	3110539	+	1	NA	NA	NA	-39036	NR_001581	73266	Mm.335891	NR_001581		Speer6-ps1	1700039A02Rik|SPEER-6	spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1	pseudo	0.065000	0.661692	
mm_56760.1	chr6	116107469	116107669	-	1	NA	NA	NA	85805	NM_177412	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.045000	0.641791	
mm_24607.1	chr3	93446001	93446201	+	1	NA	NA	NA	3771	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.080000	0.621891	
mm_83348.1	chr9	44338177	44338377	-	1	NA	NA	NA	3562	NM_010436	15270	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	0.005000	0.432836	
mm_127233.1	chr15	99406096	99406296	+	1	NA	NA	NA	12977	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.015000	0.482587	
mm_74646.1	chr8	13387385	13387585	-	1	NA	NA	NA	9293	NM_009724	11945	Mm.154039	NM_009724	ENSMUSG00000031449	Atp4b	AV080843	ATPase, H+/K+ exchanging, beta polypeptide	protein-coding	0.015000	0.557214	
mm_158162.1	chrX	103482741	103482941	-	1	NA	NA	NA	392	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.020000	0.407960	
mm_118962.1	chr14	27431244	27431444	+	1	NA	NA	NA	2497	NM_001114879	218850	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0.005000	0.343284	-6(TTTTTTAAAGAC,+,0.00)
mm_102551.1	chr11	61366509	61366709	-	1	NA	NA	NA	11466	NM_026183	67473	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	0.015000	0.592040	
mm_158827.1	chrX	168051189	168051389	-	1	NA	NA	NA	71708	NM_001290427	333605	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	0.005000	0.353234	50(CTTTTTATGCTG,+,0.00)
mm_37399.1	chr4	121109146	121109346	-	1	NA	NA	NA	-20	NM_001081312	69469	Mm.481120	NM_001081312	ENSMUSG00000078577	Tmco2	1700028F16Rik	transmembrane and coiled-coil domains 2	protein-coding	0.010000	0.462687	
mm_89763.1	chr10	100050753	100050953	+	1	NA	NA	NA	35032	NM_013598	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.010000	0.333333	
mm_113462.1	chr13	36096763	36096963	+	1	NA	NA	NA	20494	NM_201358	380840	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	0.000000	0.388060	
mm_159443.1	chr3	127633084	127633284	+	1	NA	NA	NA	39	NM_009718	11924	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	0.070000	0.567164	-80(TGGTATATAAGG,-,0.00)
mm_172423.1	chr7	28049988	28050188	-	1	NA	NA	NA	4	NM_011874	23996	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	0.065000	0.572139	-34(TACCTTAAAAAC,-,0.00),-32(CCTTAAAAACTA,+,0.00)
mm_122816.1	chr14	54617905	54618105	-	1	NA	NA	NA	-10	NM_011186	19173	Mm.8911	NM_011186	ENSMUSG00000022193	Psmb5	-	proteasome (prosome, macropain) subunit, beta type 5	protein-coding	0.085000	0.601990	
mm_100486.1	chr11	120348632	120348832	+	1	NA	NA	NA	54	NR_038126	66838	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0.170000	0.825871	
mm_155704.1	chrX	95558095	95558295	+	1	NA	NA	NA	-208	NM_001313743	70392	Mm.79122	NM_080858	ENSMUSG00000031204	Asb12	2310036C05Rik|Asb-12	ankyrin repeat and SOCS box-containing 12	protein-coding	0.000000	0.427861	
mm_141224.1	chr17	27323241	27323441	-	1	NA	NA	NA	-5044	NR_106075	102466818		NR_106075	ENSMUSG00000099237	Mir7216	Gm27555|mmu-mir-7216	microRNA 7216	ncRNA	0.005000	0.432836	
mm_6908.1	chr1	84838904	84839104	-	1	NA	NA	NA	300	NM_133975	14897	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.110000	0.766169	
mm_75940.1	chr8	71566521	71566721	-	1	NA	NA	NA	28	NM_145598	234404	Mm.213208	NM_145598	ENSMUSG00000034829	Nxnl1	A930031O08Rik|RdCVF|Txnl6	nucleoredoxin-like 1	protein-coding	0.015000	0.537313	
mm_19404.1	chr2	91643492	91643692	-	1	NA	NA	NA	6186	NM_001347175	381410	Mm.330401	NM_001033451	ENSMUSG00000075040	Zfp408	Gm1011	zinc finger protein 408	protein-coding	0.000000	0.338308	
mm_63960.1	chr7	139943688	139943888	+	1	NA	NA	NA	-68	NM_009482	22286	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	0.070000	0.666667	
mm_71086.1	chr8	34807199	34807399	+	1	NA	NA	NA	-311	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.085000	0.671642	
mm_99834.1	chr11	109011721	109011921	+	1	NA	NA	NA	91472	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.095000	0.636816	
mm_129799.1	chr15	82899659	82899859	-	1	NA	NA	NA	679	NR_045068	100504637	Mm.440928	NR_045068	ENSMUSG00000100199	Gm20324	-	predicted gene, 20324	ncRNA	0.125000	0.721393	
mm_31724.1	chr4	62685304	62685504	+	1	NA	NA	NA	11430	NM_001310706	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.025000	0.572139	
mm_3275.1	chr1	136570519	136570719	+	1	NA	NA	NA	-54282	NM_177643	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.035000	0.532338	
mm_82456.1	chr9	15627746	15627946	-	1	NA	NA	NA	87	NM_181816	234964	Mm.32237	NM_181816	ENSMUSG00000039977	Ccdc67	4933401K09Rik|Deup1	coiled-coil domain containing 67	protein-coding	0.060000	0.696517	
mm_64354.1	chr7	142388089	142388289	+	1	NA	NA	NA	-319	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.015000	0.552239	
mm_31620.1	chr4	59189398	59189598	+	1	NA	NA	NA	-52	NM_011673	22234	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.175000	0.815920	
mm_173291.1	chrY	2383157	2383357	-	1	NA	NA	NA	-212848	NM_009571	22768	Mm.411381	NM_009571	ENSMUSG00000000103	Zfy2	Zfy-2	zinc finger protein 2, Y-linked	protein-coding	0.020000	0.432836	-34(AGGTATTTAAGC,-,0.00)
mm_83145.1	chr9	40455697	40455897	-	1	NA	NA	NA	-33	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.080000	0.646766	
mm_142078.1	chr17	35701954	35702154	-	1	NA	NA	NA	-10	NM_001198831	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.035000	0.651741	
mm_106231.1	chr11	117360384	117360584	-	1	NA	NA	NA	28171	NM_001113488	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.055000	0.606965	
mm_151111.1	chr19	47864296	47864496	+	1	NA	NA	NA	-1149	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.020000	0.542289	
mm_133811.1	chr16	95702359	95702559	+	1	NA	NA	NA	52	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.105000	0.716418	
mm_108693.1	chr12	86902487	86902687	+	1	NA	NA	NA	-17773	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.010000	0.407960	
mm_12285.1	chr2	69008488	69008688	+	1	NA	NA	NA	-127212	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.005000	0.353234	
mm_59438.1	chr7	27131226	27131426	+	1	NA	NA	NA	11371	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.035000	0.522388	
mm_25887.1	chr3	130936493	130936693	+	1	NA	NA	NA	-173704	NM_010703	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.015000	0.557214	-98(TGGCTTAAATGG,-,0.00),-96(GCTTAAATGGTG,+,0.00)
mm_1663.1	chr1	74731934	74732134	+	1	NA	NA	NA	16921	NM_153744	241113	Mm.166501	NM_153744	ENSMUSG00000006542	Prkag3	AMPKg3L|AMPKg3S|Amkg3|Ampkg3	protein kinase, AMP-activated, gamma 3 non-catatlytic subunit	protein-coding	0.015000	0.527363	84(GGGCTTAAAGGG,-,0.00)
mm_24670.1	chr3	94693465	94693665	+	1	NA	NA	NA	-8	NM_019414	20342	Mm.225405	NM_019414	ENSMUSG00000068877	Selenbp2	AP56|Lpsb2	selenium binding protein 2	protein-coding	0.005000	0.547264	-98(CCCTTTATAGTT,+,0.00)
mm_125030.1	chr15	25753136	25753336	+	1	NA	NA	NA	-90062	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.030000	0.547264	-66(CAGCATAAAAGG,-,0.00)
mm_163774.1	chr13	120018256	120018456	+	1	NA	NA	NA	33848	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.000000	0.407960	
mm_9930.1	chr1	189901607	189901807	-	1	NA	NA	NA	20581	NM_026796	226830	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.010000	0.487562	
mm_53532.1	chr6	136587444	136587644	+	1	NA	NA	NA	68693	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.035000	0.517413	
mm_77347.1	chr8	119574821	119575021	-	1	NA	NA	NA	279	NM_175185	72552	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	0.095000	0.676617	
mm_32887.1	chr4	118961893	118962093	+	1	NA	NA	NA	26	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.010000	0.512438	
mm_169840.1	chr16	3083205	3083405	-	1	NA	NA	NA	-509093	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.015000	0.447761	-33(GGTTATAAAAGG,-,0.00)
mm_62131.1	chr7	97081559	97081759	+	1	NA	NA	NA	-92	NM_001162477	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.155000	0.820896	
mm_61003.1	chr7	49343382	49343582	+	1	NA	NA	NA	97293	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.040000	0.542289	
mm_25781.1	chr3	126597325	126597525	+	1	NA	NA	NA	474	NM_023813	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.110000	0.656716	
mm_96251.1	chr11	62575887	62576087	+	1	NA	NA	NA	1501	NM_011706	22368	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0.055000	0.597015	
mm_121113.1	chr14	101838408	101838608	+	1	NA	NA	NA	-2115	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.025000	0.437811	-33(GTTTATATAGGA,+,0.00),-13(TGCTTTTAAAAC,-,0.00),-12(GCTTTTAAAACC,+,0.00),-11(CTTTTAAAACCG,+,0.00)
mm_128310.1	chr15	37792077	37792277	-	1	NA	NA	NA	-177	NM_001170866	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.090000	0.721393	
mm_53856.1	chr6	149309216	149309416	+	1	NA	NA	NA	-98	NM_001289661	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.035000	0.572139	
mm_132949.1	chr16	49911784	49911984	+	1	NA	NA	NA	56230	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.035000	0.557214	
mm_149200.1	chr19	9977919	9978119	+	1	NA	NA	NA	-2581	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.015000	0.442786	
mm_104847.1	chr11	99230909	99231109	-	1	NA	NA	NA	8	NM_020618	57376	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	0.075000	0.592040	
mm_112333.1	chr12	115952892	115953092	-	1	NA	NA	NA	-94732	NM_001004066	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0.000000	0.447761	
mm_26832.1	chr3	10971871	10972071	-	1	NA	NA	NA	-531841	NM_001127191	74718	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0.000000	0.363184	
mm_71704.1	chr8	61928020	61928220	+	1	NA	NA	NA	33	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.045000	0.492537	-33(ACTTATAAAAGG,-,0.00)
mm_130603.1	chr15	99819608	99819808	-	1	NA	NA	NA	441	NM_023063	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.040000	0.542289	31(CGATTTTAAAGC,-,0.00),32(GATTTTAAAGCC,+,0.00)
mm_160690.1	chr10	23920258	23920458	+	1	NA	NA	NA	-48	NM_053205	111174	Mm.377141	NM_053205	ENSMUSG00000056379	Taar1	Tar1|Trar1|taR-1	trace amine-associated receptor 1	protein-coding	0.015000	0.467662	
mm_144527.1	chr18	25065713	25065913	+	1	NA	NA	NA	100152	NM_001142697	66648	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.010000	0.492537	
mm_59272.1	chr7	24902858	24903058	+	1	NA	NA	NA	-28	NM_001130150	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.145000	0.786070	
mm_55981.1	chr6	85902433	85902633	-	1	NA	NA	NA	0	NM_001145895	75541	Mm.24454	NM_029331	ENSMUSG00000068299	Nat8f4	1700019G17Rik	N-acetyltransferase 8 (GCN5-related) family member 4	protein-coding	0.010000	0.492537	
mm_25170.1	chr3	103090090	103090290	+	1	NA	NA	NA	16176	NM_001033303	229665	Mm.331272	NM_001033303	ENSMUSG00000070385	Ampd1	AI553520|Ampd-1	adenosine monophosphate deaminase 1	protein-coding	0.020000	0.527363	
mm_17253.1	chr2	25815749	25815949	-	1	NA	NA	NA	-13	NM_001039095	71103	Mm.236431	NM_001039095	ENSMUSG00000036401	Glt6d1	4933411C14Rik|GT6m7	glycosyltransferase 6 domain containing 1	protein-coding	0.005000	0.487562	
mm_126698.1	chr15	85042413	85042613	+	1	NA	NA	NA	5451	NM_133750	73225	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0.005000	0.482587	-41(TGGCTTAAAAGA,-,0.00),66(TGGTTTAAAAAC,-,0.00)
mm_4324.1	chr1	171851919	171852119	+	1	NA	NA	NA	12322	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.393035	-82(GCTTTTATAAAA,+,0.00),-31(ACTTATAAAGGA,+,0.00)
mm_138034.1	chr17	33919561	33919761	+	1	NA	NA	NA	183	NM_009318	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.035000	0.522388	
mm_112053.1	chr12	111804048	111804248	-	1	NA	NA	NA	9731	NM_028875	74335	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	0.010000	0.527363	
mm_120922.1	chr14	76436181	76436381	+	1	NA	NA	NA	20460	NM_207652	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.030000	0.467662	
mm_163069.1	chr11	67250775	67250975	-	1	NA	NA	NA	13063	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.030000	0.482587	
mm_91430.1	chr10	33211255	33211455	-	1	NA	NA	NA	45002	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.020000	0.447761	11(CTCTTTATAGCT,+,0.00)
mm_164105.1	chr15	25828727	25828927	+	1	NA	NA	NA	-14471	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.025000	0.457711	
mm_98267.1	chr11	88994638	88994838	+	1	NA	NA	NA	-4665	NM_009546	217069	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.020000	0.462687	-82(CCGTTTAAAAAA,-,0.00)
mm_89127.1	chr10	84917575	84917775	+	1	NA	NA	NA	62	NM_183172	237422	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0.095000	0.721393	
mm_112178.1	chr12	113421905	113422105	-	1	NA	NA	NA	-67560	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.015000	0.527363	
mm_74372.1	chr8	128503202	128503402	+	1	NA	NA	NA	144061	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.025000	0.437811	
mm_145609.1	chr18	61096715	61096915	+	1	NA	NA	NA	-8757	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.035000	0.497512	
mm_90602.1	chr10	128322459	128322659	+	1	NA	NA	NA	100	NM_019953	56530	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy FGF signaling regulator 2	protein-coding	0.080000	0.671642	
mm_88383.1	chr10	76448984	76449184	+	1	NA	NA	NA	3	NM_029816	76964	Mm.472489	NM_029816	ENSMUSG00000009114	2610028H24Rik	ORF67	RIKEN cDNA 2610028H24 gene	protein-coding	0.000000	0.562189	
mm_39475.1	chr5	20117456	20117656	+	1	NA	NA	NA	210038	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.005000	0.497512	
mm_126381.1	chr15	80173185	80173385	+	1	NA	NA	NA	-436	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.090000	0.636816	
mm_100280.1	chr11	117792361	117792561	+	1	NA	NA	NA	-5199	NM_029964	77727	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	-	RIKEN cDNA 6030468B19 gene	protein-coding	0.020000	0.577114	
mm_95887.1	chr11	58104065	58104265	+	1	NA	NA	NA	12	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.095000	0.691542	
mm_32028.1	chr4	95215339	95215539	+	1	NA	NA	NA	-163217	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.010000	0.442786	
mm_151620.1	chr19	3905148	3905348	-	1	NA	NA	NA	-18	NM_016921	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.000000	0.552239	
mm_146036.1	chr18	69522073	69522273	+	1	NA	NA	NA	176452	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.040000	0.512438	
mm_146962.1	chr18	33438212	33438412	-	1	NA	NA	NA	25322	NM_001267717	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.015000	0.407960	
mm_18917.1	chr2	76737365	76737565	-	1	NA	NA	NA	62150	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.482587	
mm_83683.1	chr9	50479487	50479687	-	1	NA	NA	NA	-14938	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.025000	0.437811	
mm_95159.1	chr11	35945413	35945613	+	1	NA	NA	NA	34576	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.030000	0.492537	-34(GACTTTATAAGA,-,0.00)
mm_78071.1	chr9	15315428	15315628	+	1	NA	NA	NA	2917	NR_106108	102465758		NR_106108	ENSMUSG00000105847	Gm25500	Mir7650|mmu-mir-7650	predicted gene, 25500	ncRNA	0.005000	0.393035	
mm_134551.1	chr16	19982917	19983117	-	1	NA	NA	NA	32	NM_183390	239743	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.025000	0.532338	
mm_155140.1	chrX	51020775	51020975	+	1	NA	NA	NA	-2857	NM_172413	72065	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	0.025000	0.432836	
mm_2671.1	chr1	127209646	127209846	+	1	NA	NA	NA	4760	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.005000	0.363184	
mm_4783.1	chr1	184034281	184034481	+	1	NA	NA	NA	-80	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.070000	0.597015	
mm_15930.1	chr2	165081665	165081865	+	1	NA	NA	NA	8985	NR_033448	72211	Mm.482899	NR_033448	ENSMUSG00000078935	1700025C18Rik	-	RIKEN cDNA 1700025C18 gene	ncRNA	0.010000	0.402985	
mm_101136.1	chr11	12464839	12465039	-	1	NA	NA	NA	21	NM_172496	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.185000	0.830846	
mm_97553.1	chr11	78929726	78929926	+	1	NA	NA	NA	4535	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.487562	
mm_27874.1	chr3	79169473	79169673	-	1	NA	NA	NA	-23698	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.025000	0.422886	
mm_38409.1	chr4	139092897	139093097	-	1	NA	NA	NA	-27	NM_008675	17965	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	0.145000	0.805970	
mm_125216.1	chr15	34082906	34083106	+	1	NA	NA	NA	287	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.115000	0.711443	
mm_12452.1	chr2	71211869	71212069	+	1	NA	NA	NA	23	NM_010064	13427	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0.115000	0.651741	
mm_106203.1	chr11	116843249	116843449	-	1	NA	NA	NA	100	NM_033398	107817	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	0.105000	0.706468	23(CGACTTTAAAGG,-,0.00),24(GACTTTAAAGGC,-,0.00),25(ACTTTAAAGGCG,+,0.00)
mm_107463.1	chr12	37241751	37241951	+	1	NA	NA	NA	212	NM_178767	319660	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	0.010000	0.487562	
mm_71210.1	chr8	40890586	40890786	+	1	NA	NA	NA	28319	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.015000	0.402985	
mm_125177.1	chr15	31572068	31572268	+	1	NA	NA	NA	3256	NM_181588	69574	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0.025000	0.522388	
mm_48277.1	chr5	137989884	137990084	-	1	NA	NA	NA	8463	NM_013478	12007	Mm.30061	NM_013478	ENSMUSG00000037053	Azgp1	Zag	alpha-2-glycoprotein 1, zinc	protein-coding	0.005000	0.472637	
mm_137501.1	chr17	26973090	26973290	+	1	NA	NA	NA	11	NM_001005916	474156	Mm.328890	NM_001005916	ENSMUSG00000079605	Zbtb9	3930402F13Rik	zinc finger and BTB domain containing 9	protein-coding	0.130000	0.721393	
mm_71255.1	chr8	40917429	40917629	+	1	NA	NA	NA	-8704	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.015000	0.427861	
mm_62806.1	chr7	112904804	112905004	+	1	NA	NA	NA	-49058	NM_175279	78748	Mm.349943	NM_175279	ENSMUSG00000098132	Rassf10	4632411J06Rik	Ras association (RalGDS/AF-6) domain family (N-terminal) member 10	protein-coding	0.005000	0.368159	-46(CTCTTTAAAGTG,+,0.00)
mm_14200.1	chr2	127208370	127208570	+	1	NA	NA	NA	66	NM_177214	320632	Mm.215860	NM_177214	ENSMUSG00000003660	Snrnp200	A330064G03Rik|Ascc3l1|BC011390|HELIC2|U5-200-KD|U5-200KD	small nuclear ribonucleoprotein 200 (U5)	protein-coding	0.090000	0.587065	
mm_89170.1	chr10	86311142	86311342	+	1	NA	NA	NA	10830	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.005000	0.427861	
mm_10552.1	chr2	16729189	16729389	+	1	NA	NA	NA	284437	NR_040632	75069	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	0.005000	0.432836	
mm_11124.1	chr2	28229262	28229462	+	1	NA	NA	NA	23673	NM_019498	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.030000	0.547264	
mm_101558.1	chr11	33932916	33933116	-	1	NA	NA	NA	-29997	NM_031169	16533	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	0.030000	0.562189	-32(GGTTATATAAGA,-,0.00)
mm_135092.1	chr16	34943178	34943378	-	1	NA	NA	NA	-3949	NR_040536	76649	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.010000	0.482587	-67(TGTTCTAAAAGG,-,0.00)
mm_151223.1	chr19	53700647	53700847	+	1	NA	NA	NA	23441	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.005000	0.273632	
mm_56873.1	chr6	118748181	118748381	-	1	NA	NA	NA	9693	NM_001290335	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.000000	0.393035	
mm_4515.1	chr1	174501720	174501920	+	1	NA	NA	NA	-5	NM_019445	54418	Mm.330620	NM_019445	ENSMUSG00000028354	Fmn2	AU024104	formin 2	protein-coding	0.090000	0.711443	
mm_159039.1	chr1	180696868	180697068	-	1	NA	NA	NA	66	NM_013729	27217	Mm.103647	NM_013729	ENSMUSG00000026497	Mixl1	Mm1|Mml	Mix1 homeobox-like 1 (Xenopus laevis)	protein-coding	0.110000	0.731343	
mm_73740.1	chr8	114147897	114148097	+	1	NA	NA	NA	14423	NM_024437	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	0.015000	0.592040	
mm_10336.1	chr2	11642706	11642906	+	1	NA	NA	NA	14	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.005000	0.402985	14(GCTTAAATAGAA,+,0.00),48(TTGTCTAAAAGC,-,0.00)
mm_46547.1	chr5	106458387	106458587	-	1	NA	NA	NA	-321	NM_001005477	104382	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH-like 2 (Drosophila)	protein-coding	0.190000	0.830846	
mm_29870.1	chr3	130730231	130730431	-	1	NA	NA	NA	-2	NM_001199350	619547	Mm.391636	NM_001199350		Rpl34-ps1	EG619547|ENSMUSG00000068396|Gm10239	ribosomal protein L34, pseudogene 1	protein-coding	0.105000	0.631841	
mm_64062.1	chr7	140856392	140856592	+	1	NA	NA	NA	-109	NM_018742	54399	Mm.155696	NM_018742	ENSMUSG00000025484	Bet1l	2610021K23Rik|Gs15	Bet1 golgi vesicular membrane trafficking protein like	protein-coding	0.040000	0.547264	
mm_98247.1	chr11	88204286	88204486	+	1	NA	NA	NA	-2	NM_024174	64656	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	0.095000	0.666667	
mm_64446.1	chr7	142654233	142654433	+	1	NA	NA	NA	663	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.060000	0.592040	
mm_55661.1	chr6	72394463	72394663	-	1	NA	NA	NA	-3896	NM_016794	22320	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.005000	0.527363	
mm_137673.1	chr17	28785962	28786162	+	1	NA	NA	NA	-15064	NM_001081315	268936	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0.020000	0.457711	
mm_57982.1	chr6	135733494	135733694	-	1	NA	NA	NA	74681	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	0.010000	0.532338	
mm_20401.1	chr2	129288803	129289003	-	1	NA	NA	NA	8309	NM_181589	70466	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	0.000000	0.298507	
mm_58849.1	chr7	16844041	16844241	+	1	NA	NA	NA	1076	NM_178900	101540	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.020000	0.567164	
mm_63657.1	chr7	129432332	129432532	+	1	NA	NA	NA	-159431	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.005000	0.452736	
mm_171908.1	chr5	49498749	49498949	-	1	NA	NA	NA	-213190	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.010000	0.417910	
mm_129045.1	chr15	75216073	75216273	-	1	NA	NA	NA	-52248	NM_008530	17071	Mm.377095	NM_008530	ENSMUSG00000022583	Ly6f	-	lymphocyte antigen 6 complex, locus F	protein-coding	0.005000	0.467662	
mm_19523.1	chr2	94155294	94155494	-	1	NA	NA	NA	2515	NM_019657	56348	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0.000000	0.497512	
mm_151609.1	chr19	3768602	3768802	-	1	NA	NA	NA	1281	NM_001167885	225888	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0.150000	0.751244	
mm_170762.1	chr2	16017002	16017202	-	1	NA	NA	NA	-339202	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.010000	0.492537	-33(CCCTTTATAAGC,+,0.00),-33(CCCTTTATAAGC,-,0.00),-31(CTTTATAAGCGC,+,0.00)
mm_148248.1	chr18	80708048	80708248	-	1	NA	NA	NA	25	NM_001164111	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.145000	0.761194	
mm_137912.1	chr17	32113724	32113924	+	1	NA	NA	NA	-22401	NR_027316	435518	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	ENSMUSG00000002791|Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0.095000	0.671642	
mm_122004.1	chr14	26928518	26928718	-	1	NA	NA	NA	34014	NM_080856	142687	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	0.020000	0.383085	73(CTCTCTAAAAAA,-,0.00)
mm_16282.1	chr2	174019163	174019363	+	1	NA	NA	NA	-57788	NM_172675	228960	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.015000	0.497512	
mm_4169.1	chr1	171114098	171114298	+	1	NA	NA	NA	-7463	NM_001081275	75472	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.040000	0.597015	
mm_104986.1	chr11	100265820	100266020	-	1	NA	NA	NA	3951	NM_212483	68239	Mm.158190	NM_212483	ENSMUSG00000053654	Krt42	2410039E07Rik|K17n|Ka22|ecat6	keratin 42	protein-coding	0.030000	0.537313	
mm_59126.1	chr7	19940358	19940558	+	1	NA	NA	NA	10285	NM_027308	70080	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	0.005000	0.507463	
mm_128545.1	chr15	55072073	55072273	-	1	NA	NA	NA	-21	NM_001081288	319944	Mm.380957	NM_001081288	ENSMUSG00000037343	Taf2	150kDa|4732460C16Rik|AI425886|CIF150|TAF2B|TAFII-150|TAFII150	TATA-box binding protein associated factor 2	protein-coding	0.100000	0.631841	
mm_118273.1	chr13	112620616	112620816	-	1	NA	NA	NA	31594	NM_010029	13206	Mm.12818	NM_010029	ENSMUSG00000021758	Ddx4	AV206478|Mvh|VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding	0.015000	0.388060	
mm_112035.1	chr12	111538493	111538693	-	1	NA	NA	NA	492	NM_173363	217869	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.175000	0.751244	
mm_125192.1	chr15	32691229	32691429	+	1	NA	NA	NA	-229394	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0.000000	0.363184	
mm_3880.1	chr1	161035318	161035518	+	1	NA	NA	NA	252	NR_002840	14455	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	0.040000	0.477612	
mm_7653.1	chr1	128327652	128327852	-	1	NA	NA	NA	566	NM_001081078	226413	Mm.26930	NM_001081078	ENSMUSG00000026354	Lct	Gm100|LAC|LPH|Lphl	lactase	protein-coding	0.010000	0.482587	
mm_125940.1	chr15	76247906	76248106	+	1	NA	NA	NA	-185	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.000000	0.611940	
mm_139704.1	chr17	57451520	57451720	+	1	NA	NA	NA	92934	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.010000	0.343284	
mm_27793.1	chr3	75556811	75557011	-	1	NA	NA	NA	-59	NM_019745	56426	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	0.045000	0.532338	
mm_83276.1	chr9	43071091	43071291	-	1	NA	NA	NA	34527	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0.020000	0.522388	
mm_68932.1	chr7	126495354	126495554	-	1	NA	NA	NA	6971	NM_001347658	233871	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.005000	0.552239	
mm_6916.1	chr1	84839485	84839685	-	1	NA	NA	NA	-256	NM_025386	66153	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.065000	0.611940	
mm_123093.1	chr14	55783950	55784150	-	1	NA	NA	NA	-31	NM_080435	104110	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	0.035000	0.636816	
mm_170207.1	chr17	69879786	69879986	-	1	NA	NA	NA	-89187	NM_001347412	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.000000	0.482587	
mm_104158.1	chr11	87281098	87281298	-	1	NA	NA	NA	77796	NM_177167	320472	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	0.000000	0.248756	
mm_127167.1	chr15	98738330	98738530	+	1	NA	NA	NA	-10232	NM_024169	66120	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.015000	0.507463	
mm_30013.1	chr3	135665019	135665219	-	1	NA	NA	NA	26428	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.000000	0.378109	
mm_18840.1	chr2	75133615	75133815	-	1	NA	NA	NA	307903	NM_016804	53375	Mm.292613	NM_016804	ENSMUSG00000027099	Mtx2	1500012G02Rik	metaxin 2	protein-coding	0.010000	0.467662	
mm_76282.1	chr8	84197486	84197686	-	1	NA	NA	NA	-10932	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.080000	0.676617	
mm_69078.1	chr7	127001845	127002045	-	1	NA	NA	NA	12649	NM_080638	78388	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0.025000	0.512438	
mm_40370.1	chr5	51052240	51052440	+	1	NA	NA	NA	501581	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.010000	0.388060	-76(ACTTATATAAGG,-,0.00),-35(CTTTATATAGCA,+,0.00)
mm_25931.1	chr3	131223845	131224045	+	1	NA	NA	NA	48156	NM_008212	15107	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.015000	0.427861	
mm_122888.1	chr14	54947100	54947300	-	1	NA	NA	NA	1942	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.025000	0.577114	
mm_145084.1	chr18	42398284	42398484	+	1	NA	NA	NA	3787	NM_138945	18998	Mm.488204	NM_138945	ENSMUSG00000024497	Pou4f3	Brn3.1|Brn3c|ddl|dreidel	POU domain, class 4, transcription factor 3	protein-coding	0.080000	0.542289	
mm_136306.1	chr16	91637925	91638125	-	1	NA	NA	NA	8947	NM_010256	14450	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	0.030000	0.537313	
mm_42482.1	chr5	115470739	115470939	+	1	NA	NA	NA	4573	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.035000	0.567164	
mm_41699.1	chr5	100846333	100846533	+	1	NA	NA	NA	204	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|Gpat3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding	0.080000	0.666667	
mm_37579.1	chr4	126321587	126321787	-	1	NA	NA	NA	16	NM_133883	100206	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	0.135000	0.731343	
mm_73278.1	chr8	104624471	104624671	+	1	NA	NA	NA	-175	NM_001252628	12556	Mm.19423	NM_007663	ENSMUSG00000031881	Cdh16	-	cadherin 16	protein-coding	0.005000	0.477612	
mm_66362.1	chr7	43530286	43530486	-	1	NA	NA	NA	2785	NM_001111058	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.005000	0.442786	-32(GTTTTTAAACTC,+,0.00)
mm_13878.1	chr2	119948003	119948203	+	1	NA	NA	NA	-24596	NM_011941	26390	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	0.005000	0.462687	
mm_77016.1	chr8	107966818	107967018	-	1	NA	NA	NA	-378436	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.015000	0.522388	
mm_160135.1	chr7	30739307	30739507	-	1	NA	NA	NA	0	NM_008085	14447	Mm.436562	NM_008085	ENSMUSG00000061099	Gapdhs	Gapd-s|Gapds	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein-coding	0.025000	0.532338	
mm_59863.1	chr7	30121858	30122058	+	1	NA	NA	NA	10	NM_001081007	233060	Mm.443484	NM_001081007	ENSMUSG00000074220	Zfp382	5930415A09Rik|Znf382	zinc finger protein 382	protein-coding	0.125000	0.696517	
mm_58655.1	chr7	6398614	6398814	+	1	NA	NA	NA	15396	NM_175247	22690	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding	0.050000	0.532338	
mm_150099.1	chr19	29470708	29470908	+	1	NA	NA	NA	51179	NR_015567	77779	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.015000	0.502488	76(TTATTTATAGCC,+,0.00)
mm_71955.1	chr8	70510437	70510637	+	1	NA	NA	NA	-170	NM_019883	22186	Mm.297372	NM_019883	ENSMUSG00000090137	Uba52	D8Ertd21e|Gm1863|Rps27a|Ubb|Ubc	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding	0.100000	0.626866	
mm_166423.1	chr5	137151803	137152003	-	1	NA	NA	NA	-35696	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.015000	0.507463	
mm_30711.1	chr4	12124301	12124501	+	1	NA	NA	NA	-15716	NM_028226	72397	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	0.035000	0.532338	-34(GGGTATAAATGG,-,0.00)
mm_78129.1	chr9	20818398	20818598	+	1	NA	NA	NA	-6	NM_001030290	235033	Mm.297661	NM_001030290	ENSMUSG00000053773	Rdh8	Gm182|prRDH	retinol dehydrogenase 8	protein-coding	0.030000	0.611940	
mm_1204.1	chr1	62725703	62725903	+	1	NA	NA	NA	22486	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.010000	0.407960	
mm_169060.1	chr13	24416608	24416808	+	1	NA	NA	NA	1586	NM_001284520	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.015000	0.552239	
mm_17340.1	chr2	26601827	26602027	-	1	NA	NA	NA	2490	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.010000	0.507463	
mm_1777.1	chr1	78511653	78511853	+	1	NA	NA	NA	693	NM_026713	68393	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	0.040000	0.601990	
mm_38229.1	chr4	136021547	136021747	-	1	NA	NA	NA	2	NM_013736	27224	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	0.140000	0.721393	
mm_156494.1	chrX	144336067	144336267	+	1	NA	NA	NA	18201	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.015000	0.517413	
mm_135903.1	chr16	67112540	67112740	-	1	NA	NA	NA	455522	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0.005000	0.348259	14(CACTTTTTAAGG,-,0.00),16(CTTTTTAAGGTA,+,0.00)
mm_83949.1	chr9	56925827	56926027	-	1	NA	NA	NA	2444	NM_175483	235406	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	0.050000	0.562189	
mm_61394.1	chr7	73185704	73185904	+	1	NA	NA	NA	-83736	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	0.015000	0.457711	
mm_162711.1	chr10	27127380	27127580	-	1	NA	NA	NA	-262386	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	0.000000	0.432836	
mm_158406.1	chrX	136837935	136838135	-	1	NA	NA	NA	15289	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.000000	0.338308	29(CCTTATATATTG,+,0.00)
mm_122763.1	chr14	54253616	54253816	-	1	NA	NA	NA	213	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.045000	0.557214	-33(CTTTATATACTG,+,0.00)
mm_85059.1	chr9	90242926	90243126	-	1	NA	NA	NA	27743	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.020000	0.537313	
mm_171088.1	chr3	124385703	124385903	+	1	NA	NA	NA	40225	NM_027939	71824	Mm.331353	NM_027939	ENSMUSG00000027973	1700006A11Rik	-	RIKEN cDNA 1700006A11 gene	protein-coding	0.010000	0.517413	
mm_48667.1	chr5	145981370	145981570	-	1	NA	NA	NA	28147	NM_019792	56388	Mm.301900	NM_019792	ENSMUSG00000029630	Cyp3a25	AI327008	cytochrome P450, family 3, subfamily a, polypeptide 25	protein-coding	0.000000	0.462687	
mm_78397.1	chr9	28920358	28920558	+	1	NA	NA	NA	1042671	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.005000	0.393035	
mm_124334.1	chr14	103844073	103844273	-	1	NA	NA	NA	303	NM_001136061	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.045000	0.572139	
mm_172193.1	chr6	51466049	51466249	-	1	NA	NA	NA	3745	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.015000	0.427861	
mm_148440.1	chr19	3948679	3948879	+	1	NA	NA	NA	-10029	NM_028545	73458	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	0.060000	0.646766	
mm_137341.1	chr17	25136513	25136713	+	1	NA	NA	NA	-18	NM_001317404	26373	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.005000	0.492537	65(GTCTTTAAATGC,-,0.00)
mm_109530.1	chr12	111538695	111538895	+	1	NA	NA	NA	694	NM_173363	217869	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.135000	0.751244	
mm_148524.1	chr19	4439425	4439625	+	1	NA	NA	NA	-34	NR_045989	319314	Mm.393810	NR_045989	ENSMUSG00000087132	A930001C03Rik	-	RIKEN cDNA A930001C03 gene	ncRNA	0.090000	0.736318	
mm_100910.1	chr11	6229167	6229367	-	1	NA	NA	NA	978	NM_207242	237636	Mm.212492	NM_207242	ENSMUSG00000020447	Npc1l1	9130221N23Rik|Gm243	NPC1-like 1	protein-coding	0.020000	0.547264	-44(CCTTTTATGAAG,+,0.00)
mm_27151.1	chr3	33082757	33082957	-	1	NA	NA	NA	203	NM_021483	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.030000	0.567164	
mm_80908.1	chr9	100643487	100643687	+	1	NA	NA	NA	-36	NM_009282	20842	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	0.105000	0.711443	
mm_93809.1	chr10	121297277	121297477	-	1	NA	NA	NA	13812	NM_029057	74694	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik	TBC1 domain family, member 30	protein-coding	0.065000	0.552239	-39(CGATTTAAAAAG,-,0.00)
mm_144029.1	chr17	90037053	90037253	-	1	NA	NA	NA	51215	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.035000	0.452736	
mm_56424.1	chr6	97253095	97253295	-	1	NA	NA	NA	-415	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.015000	0.547264	
mm_16907.1	chr2	13491856	13492056	-	1	NA	NA	NA	-80	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.000000	0.407960	
mm_117572.1	chr13	85289265	85289465	-	1	NA	NA	NA	121	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.130000	0.771144	
mm_156143.1	chrX	129753474	129753674	+	1	NA	NA	NA	3832	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.005000	0.427861	
mm_162638.1	chr1	191396009	191396209	-	1	NA	NA	NA	932	NM_144880	226849	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0.045000	0.606965	
mm_123731.1	chr14	70173809	70174009	-	1	NA	NA	NA	2906	NM_001253736	213019	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0.005000	0.417910	
mm_165465.1	chr2	162392292	162392492	+	1	NA	NA	NA	1579	NR_040617	77645	Mm.447752	NR_040617	ENSMUSG00000084919	Ptprtos	C330008G21Rik	protein tyrosine phosphatase, receptor type T, opposite strand	ncRNA	0.005000	0.417910	
mm_161905.1	chr18	60501852	60502052	-	1	NA	NA	NA	31	NM_134133	106878	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.025000	0.437811	
mm_8567.1	chr1	155417276	155417476	-	1	NA	NA	NA	68	NM_011273	19775	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.125000	0.726368	
mm_168883.1	chr12	44482985	44483185	+	1	NA	NA	NA	154200	NM_001146031	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.040000	0.492537	
mm_68631.1	chr7	118150518	118150718	-	1	NA	NA	NA	-20993	NM_019419	54208	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0.000000	0.363184	
mm_4681.1	chr1	180568887	180569087	+	1	NA	NA	NA	12	NM_007415	11545	Mm.277779	NM_007415	ENSMUSG00000026496	Parp1	5830444G22Rik|AI893648|ARTD1|Adprp|Adprt1|C80510|PARP|PPOL|parp-1|sPARP-1	poly (ADP-ribose) polymerase family, member 1	protein-coding	0.130000	0.686567	
mm_74182.1	chr8	123478063	123478263	+	1	NA	NA	NA	301	NR_028260	114896	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	0.110000	0.656716	
mm_27599.1	chr3	59145927	59146127	-	1	NA	NA	NA	7465	NM_001287119	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.010000	0.462687	
mm_69410.1	chr7	132570066	132570266	-	1	NA	NA	NA	6232	NM_016978	18242	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0.020000	0.552239	
mm_30002.1	chr3	135598909	135599109	-	1	NA	NA	NA	92538	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.005000	0.393035	
mm_124515.1	chr14	121962959	121963159	-	1	NA	NA	NA	2134	NM_183031	321019	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.015000	0.517413	-27(CCCTTTATAAAA,-,0.00)
mm_158804.1	chrX	167262758	167262958	-	1	NA	NA	NA	1471	NM_001313761	170744	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	0.020000	0.393035	
mm_123329.1	chr14	63034730	63034930	-	1	NA	NA	NA	3016	NM_001039566	73670	Mm.82875	NM_001039566	ENSMUSG00000075571	Defb30	2410125J01Rik|4930449O14Rik|BD-30|mBD-30	defensin beta 30	protein-coding	0.010000	0.373134	-54(GCTTTTATAGTG,+,0.00),-7(TTTTTTATAGGT,+,0.00)
mm_98713.1	chr11	96314685	96314885	+	1	NA	NA	NA	-2380	NR_029784	723893		NR_029784	ENSMUSG00000065519	Mir10a	Mirn10a|miR-10a|mmu-mir-10a	microRNA 10a	ncRNA	0.070000	0.517413	
mm_126446.1	chr15	80722420	80722620	+	1	NA	NA	NA	11207	NM_144812	213988	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.010000	0.497512	-87(TCCTTTAAAAAA,-,0.00),-86(CCTTTAAAAAAC,+,0.00)
mm_95438.1	chr11	50225210	50225410	+	1	NA	NA	NA	-25	NM_145926	103534	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0.135000	0.771144	-6(CCCTTTAAATCC,+,0.00)
mm_90156.1	chr10	118633662	118633862	+	1	NA	NA	NA	-77237	NR_104123	103214	Mm.30529	NR_104123		Tmevpg1	AI447422	Theiler's murine encephalomyelitis virus persistence candidate gene 1	ncRNA	0.015000	0.442786	
mm_55306.1	chr6	54972310	54972510	-	1	NA	NA	NA	202	NM_172729	107607	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.110000	0.736318	
mm_156351.1	chrX	139333754	139333954	+	1	NA	NA	NA	171	NM_011635	22037	Mm.1297	NM_011635	ENSMUSG00000051257	Trap1a	Tra-P1A	tumor rejection antigen P1A	protein-coding	0.035000	0.512438	
mm_114018.1	chr13	52618100	52618300	+	1	NA	NA	NA	21318	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.010000	0.477612	
mm_90250.1	chr10	121586158	121586358	+	1	NA	NA	NA	536	NM_019786	56480	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.040000	0.527363	
mm_7957.1	chr1	133928598	133928798	-	1	NA	NA	NA	-7297	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.000000	0.502488	62(GTCTCTAAAAAG,-,0.00)
mm_58454.1	chr7	3331937	3332137	+	1	NA	NA	NA	-4548	NM_133189	81904	Mm.214994	NM_133189	ENSMUSG00000069806	Cacng7	-	calcium channel, voltage-dependent, gamma subunit 7	protein-coding	0.085000	0.746269	-76(GCCCCTTTAAGA,-,0.00),-73(CCTTTAAGAGTG,+,0.00)
mm_19116.1	chr2	79985625	79985825	-	1	NA	NA	NA	-77326	NM_001009978	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.010000	0.348259	
mm_32926.1	chr4	119195274	119195474	+	1	NA	NA	NA	64	NM_024462	69216	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	0.130000	0.786070	
mm_79261.1	chr9	50753025	50753225	+	1	NA	NA	NA	154	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.020000	0.517413	76(GCATATATAAGG,-,0.00)
mm_100654.1	chr11	3172696	3172896	-	1	NA	NA	NA	20667	NM_030207	78887	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.010000	0.398010	
mm_92528.1	chr10	79097487	79097687	-	1	NA	NA	NA	13	NM_001004362	72128	Mm.297854	NM_001004362	ENSMUSG00000060301	2610008E11Rik	-	RIKEN cDNA 2610008E11 gene	protein-coding	0.060000	0.592040	
mm_82051.1	chr9	122422024	122422224	+	1	NA	NA	NA	-23323	NR_045967	654800	Mm.393956	NR_045967		A730085K08Rik	-	RIKEN cDNA A730085K08 gene	ncRNA	0.025000	0.572139	
mm_165608.1	chr3	52009114	52009314	-	1	NA	NA	NA	95792	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.005000	0.492537	-66(GTCTTTATAGAG,+,0.00),-66(GTCTTTATAGAG,-,0.00),-64(CTTTATAGAGCA,+,0.00)
mm_90287.1	chr10	123360086	123360286	+	1	NA	NA	NA	96110	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	0.015000	0.368159	
mm_4598.1	chr1	178405919	178406119	+	1	NA	NA	NA	138	NM_026626	68226	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.095000	0.681592	
mm_10347.1	chr2	11678098	11678298	+	1	NA	NA	NA	-27095	NM_001271498	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.005000	0.368159	
mm_123266.1	chr14	61360212	61360412	-	1	NA	NA	NA	133	NM_026598	68177	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0.085000	0.691542	
mm_16410.1	chr2	180042621	180042821	+	1	NA	NA	NA	238	NM_178750	269397	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	0.145000	0.736318	
mm_32816.1	chr4	117251934	117252134	+	1	NA	NA	NA	83	NM_001285815	68777	Mm.331805	NM_026837	ENSMUSG00000048772	Tmem53	1110038M16Rik|1500001P22Rik|1700012A05Rik	transmembrane protein 53	protein-coding	0.100000	0.706468	
mm_68618.1	chr7	117470178	117470378	-	1	NA	NA	NA	89299	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.010000	0.482587	
mm_167082.1	chr7	101144400	101144600	+	1	NA	NA	NA	35725	NM_199012	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.005000	0.308458	
mm_45901.1	chr5	88676101	88676301	-	1	NA	NA	NA	-30	NM_178700	231413	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.135000	0.796020	
mm_16409.1	chr2	180042603	180042803	+	1	NA	NA	NA	220	NM_178750	269397	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	0.130000	0.726368	
mm_119502.1	chr14	47380223	47380423	+	1	NA	NA	NA	6463	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.010000	0.651741	
mm_1509.1	chr1	72346163	72346363	+	1	NA	NA	NA	38842	NM_009533	22596	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.015000	0.457711	
mm_45193.1	chr5	52189964	52190164	-	1	NA	NA	NA	482	NR_104311	13204	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	0.150000	0.766169	
mm_152747.1	chr19	19100172	19100372	-	1	NA	NA	NA	10924	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.005000	0.328358	
mm_114309.1	chr13	59731798	59731998	+	1	NA	NA	NA	-146	NM_177711	238663	Mm.444776	NM_177711	ENSMUSG00000043986	Spata31d1d	4932411G14Rik|Fam75d1d	spermatogenesis associated 31 subfamily D, member 1D	protein-coding	0.025000	0.592040	
mm_144726.1	chr18	35220751	35220951	+	1	NA	NA	NA	-5827	NM_178005	107065	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0.005000	0.437811	
mm_108651.1	chr12	86241792	86241992	+	1	NA	NA	NA	34	NM_001324488	70373	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	0.085000	0.691542	-46(CCTCTTAGGCCC,+,0.00)
mm_38849.1	chr4	149307626	149307826	-	1	NA	NA	NA	7	NM_001290995	16561	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0.150000	0.701493	
mm_669.1	chr1	40462217	40462417	+	1	NA	NA	NA	-3235	NM_001161842	16182	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0.010000	0.412935	81(TTCTTTTAAAAG,-,0.00),82(TCTTTTAAAAGC,+,0.00),82(TCTTTTAAAAGC,-,0.00),83(CTTTTAAAAGCT,+,0.00)
mm_156854.1	chrX	164401319	164401519	+	1	NA	NA	NA	-18368	NM_011081	18700	Mm.3781	NM_011081	ENSMUSG00000031381	Piga	AI194334|Pig-a	phosphatidylinositol glycan anchor biosynthesis, class A	protein-coding	0.010000	0.348259	
mm_9063.1	chr1	167466883	167467083	-	1	NA	NA	NA	-203	NM_001013382	240899	Mm.159799	NM_001013382	ENSMUSG00000040485	Lrrc52	4930413P14Rik	leucine rich repeat containing 52	protein-coding	0.025000	0.562189	
mm_165573.1	chr3	20154964	20155164	-	1	NA	NA	NA	52	NM_013755	27357	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|Gyg1	glycogenin	protein-coding	0.145000	0.756219	-33(CGCTATAAGAGC,-,0.00)
mm_139387.1	chr17	52163127	52163327	+	1	NA	NA	NA	280500	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.010000	0.442786	
mm_82208.1	chr9	124103665	124103865	+	1	NA	NA	NA	1582	NM_009915	12772	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.000000	0.412935	
mm_129362.1	chr15	77967496	77967696	-	1	NA	NA	NA	3228	NM_018749	55944	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	0.015000	0.502488	
mm_60828.1	chr7	45707721	45707921	+	1	NA	NA	NA	2574	NM_016974	13170	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.080000	0.616915	
mm_31207.1	chr4	43875475	43875675	+	1	NA	NA	NA	45	NM_016678	53614	Mm.331573	NM_016678	ENSMUSG00000028476	Reck	St15|mRECK	reversion-inducing-cysteine-rich protein with kazal motifs	protein-coding	0.125000	0.766169	
mm_159117.1	chr2	60357489	60357689	-	1	NA	NA	NA	25642	NM_013825	17076	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	0.025000	0.467662	
mm_94055.1	chr10	128211671	128211871	-	1	NA	NA	NA	23	NM_025716	66701	Mm.29694	NM_025716	ENSMUSG00000051346	Spryd4	4633402N23Rik|AA114801	SPRY domain containing 4	protein-coding	0.065000	0.606965	
mm_92120.1	chr10	63338933	63339133	-	1	NA	NA	NA	2	NM_019812	93759	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0.140000	0.756219	
mm_121178.1	chr14	103048793	103048993	+	1	NA	NA	NA	1881	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.025000	0.472637	
mm_137987.1	chr17	33629239	33629439	+	1	NA	NA	NA	247	NM_026712	328801	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	0.075000	0.636816	
mm_99425.1	chr11	102393457	102393657	+	1	NA	NA	NA	154	NM_001252347	51799	Mm.2560	NM_016759	ENSMUSG00000006575	Rundc3a	RPIP-8|Rap2ip|Rpip8	RUN domain containing 3A	protein-coding	0.105000	0.741294	
mm_11991.1	chr2	55451601	55451801	+	1	NA	NA	NA	15731	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.005000	0.388060	
mm_51776.1	chr6	88095556	88095756	+	1	NA	NA	NA	8602	NR_105795	102465196		NR_105795	ENSMUSG00000099095	Mir6376	Gm27778|mmu-mir-6376	microRNA 6376	ncRNA	0.020000	0.452736	
mm_139413.1	chr17	52756992	52757192	+	1	NA	NA	NA	154383	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.000000	0.338308	
mm_67916.1	chr7	99828264	99828464	-	1	NA	NA	NA	53	NM_016720	50877	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	0.065000	0.611940	
mm_105776.1	chr11	109721938	109722138	-	1	NA	NA	NA	218	NM_153782	208659	Mm.208662	NM_153782	ENSMUSG00000020614	Fam20a	AI606893	family with sequence similarity 20, member A	protein-coding	0.050000	0.656716	
mm_165797.1	chr3	141464599	141464799	+	1	NA	NA	NA	-865	NM_009472	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.040000	0.512438	
mm_161233.1	chr13	93186314	93186514	-	1	NA	NA	NA	5869	NM_133905	100715	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0.005000	0.373134	
mm_135564.1	chr16	50070791	50070991	-	1	NA	NA	NA	1961	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.010000	0.502488	
mm_146712.1	chr18	14683222	14683422	-	1	NA	NA	NA	-408	NM_001161370	268996	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	0.065000	0.567164	52(CCATTTAAACTA,+,0.00)
mm_5600.1	chr1	39567520	39567720	-	1	NA	NA	NA	9727	NM_001033135	67702	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4|OTTMUSG00000026591	ring finger protein 149	protein-coding	0.000000	0.333333	
mm_157456.1	chrX	43428878	43429078	-	1	NA	NA	NA	-154194	NM_011855	23963	Mm.327698	NM_011855	ENSMUSG00000016150	Tenm1	Odz1|Odz2|TCAP-1|Ten-m1|ten-1	teneurin transmembrane protein 1	protein-coding	0.095000	0.631841	
mm_153015.1	chr19	30625391	30625591	-	1	NA	NA	NA	-75995	NM_010051	13380	Mm.214717	NM_010051	ENSMUSG00000024868	Dkk1	mdkk-1	dickkopf WNT signaling pathway inhibitor 1	protein-coding	0.005000	0.467662	
mm_98292.1	chr11	89066342	89066542	+	1	NA	NA	NA	5691	NR_110336	414094	Mm.124287	NM_001001497		Dgkeos	A930013B10Rik	diacylglycerol kinase, epsilon, opposite strand	ncRNA	0.025000	0.477612	
mm_40648.1	chr5	65107467	65107667	+	1	NA	NA	NA	-1	NM_001347355	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.120000	0.756219	
mm_6340.1	chr1	71632025	71632225	-	1	NA	NA	NA	21109	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.015000	0.477612	
mm_11439.1	chr2	32017421	32017621	+	1	NA	NA	NA	-33425	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	0.005000	0.502488	
mm_122621.1	chr14	51145455	51145655	-	1	NA	NA	NA	1212	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.005000	0.517413	
mm_143312.1	chr17	66101400	66101600	-	1	NA	NA	NA	59	NM_001278415	72900	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	0.155000	0.766169	
mm_71121.1	chr8	36188510	36188710	+	1	NA	NA	NA	60906	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.015000	0.507463	
mm_129427.1	chr15	78468570	78468770	-	1	NA	NA	NA	-36	NM_027902	71753	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	0.020000	0.641791	
mm_78030.1	chr9	13806598	13806798	+	1	NA	NA	NA	20355	NR_037622	74360	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding	0.005000	0.363184	
mm_55047.1	chr6	49038277	49038477	-	1	NA	NA	NA	1859	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.000000	0.427861	
mm_101333.1	chr11	23306209	23306409	-	1	NA	NA	NA	-586	NM_001190401	17847	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.165000	0.796020	
mm_62132.1	chr7	97081589	97081789	+	1	NA	NA	NA	-62	NM_001162477	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.165000	0.820896	
mm_91493.1	chr10	37135765	37135965	-	1	NA	NA	NA	3061	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.015000	0.353234	
mm_127305.1	chr15	100227775	100227975	+	1	NA	NA	NA	16	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.150000	0.796020	
mm_151210.1	chr19	53618794	53618994	+	1	NA	NA	NA	18498	NM_007790	13006	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.005000	0.288557	
mm_12765.1	chr2	79265941	79266141	+	1	NA	NA	NA	10615	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.000000	0.333333	
mm_138175.1	chr17	34264818	34265018	+	1	NA	NA	NA	1691	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.115000	0.646766	
mm_156698.1	chrX	159488714	159488914	+	1	NA	NA	NA	29689	NM_001313753	78283	Mm.160079	NM_001081124	ENSMUSG00000041020	Map7d2	1600028E09Rik|2900002G04Rik|5330432J06Rik|C030036K04Rik|Mtap7d2	MAP7 domain containing 2	protein-coding	0.005000	0.318408	4(GCTTTAAAATAC,+,0.00),13(TACTTTTAAGGG,-,0.00),14(ACTTTTAAGGGA,+,0.00),15(CTTTTAAGGGAG,+,0.00)
mm_97387.1	chr11	77765559	77765759	+	1	NA	NA	NA	-11576	NM_001291213	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.010000	0.577114	
mm_86035.1	chr9	113955818	113956018	-	1	NA	NA	NA	24984	NM_013699	22221	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0.005000	0.472637	81(CTTTAAATACTC,+,0.00)
mm_142652.1	chr17	47611076	47611276	-	1	NA	NA	NA	316	NM_016859	53414	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	0.075000	0.587065	
mm_116276.1	chr13	34874363	34874563	-	1	NA	NA	NA	-1031	NM_013830	19134	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	0.085000	0.641791	
mm_70501.1	chr8	12866554	12866754	+	1	NA	NA	NA	-34735	NR_045775	100504249	Mm.441494	NR_045775	ENSMUSG00000084780	Gm15350	OTTMUSG00000020611	predicted gene 15350	ncRNA	0.000000	0.368159	-49(TCCTTTTTAAGA,-,0.00)
mm_40713.1	chr5	65910569	65910769	+	1	NA	NA	NA	47100	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.015000	0.572139	
mm_36484.1	chr4	83002963	83003163	-	1	NA	NA	NA	18039	NM_177863	329872	Mm.242337	NM_177863	ENSMUSG00000059049	Frem1	BC037594|D430009N09|D630008K06|crf11|eye<m02Jus>|eyes2|heb|qbrick	Fras1 related extracellular matrix protein 1	protein-coding	0.005000	0.437811	67(GTCCTGAAAAGG,-,0.00)
mm_18520.1	chr2	62800631	62800831	-	1	NA	NA	NA	136404	NM_145523	227960	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0.000000	0.308458	
mm_5609.1	chr1	39621103	39621303	-	1	NA	NA	NA	29979	NM_170597	263764	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0.000000	0.368159	
mm_119007.1	chr14	29021339	29021539	+	1	NA	NA	NA	3231	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding	0.015000	0.552239	
mm_61635.1	chr7	80269579	80269779	+	1	NA	NA	NA	24	NM_178070	233405	Mm.322870	NM_178070	ENSMUSG00000030534	Vps33b	-	vacuolar protein sorting 33B	protein-coding	0.075000	0.621891	
mm_24871.1	chr3	95972368	95972568	+	1	NA	NA	NA	-13042	NR_045872	668224	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0.035000	0.427861	
mm_163942.1	chr14	51145441	51145641	-	1	NA	NA	NA	1226	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.005000	0.512438	
mm_55416.1	chr6	65125471	65125671	-	1	NA	NA	NA	19159	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.000000	0.388060	
mm_9054.1	chr1	167331183	167331383	-	1	NA	NA	NA	-18708	NM_019993	56752	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.025000	0.522388	
mm_109301.1	chr12	109560355	109560555	+	1	NA	NA	NA	-3237	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.020000	0.447761	
mm_158661.1	chrX	157415212	157415412	-	1	NA	NA	NA	-26	NM_011077	18675	Mm.2529	NM_011077	ENSMUSG00000057457	Phex	Gy|HPDR|HPDR1|Hyp|PEX	phosphate regulating endopeptidase homolog, X-linked	protein-coding	0.015000	0.417910	-33(GGCTTTAAAAGG,-,0.00),-32(GCTTTAAAAGGG,+,0.00),-31(CTTTAAAAGGGG,+,0.00)
mm_102715.1	chr11	67114691	67114891	-	1	NA	NA	NA	5289	NR_038055	74184	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	0.020000	0.477612	
mm_126256.1	chr15	79081502	79081702	+	1	NA	NA	NA	6379	NM_145139	223691	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	0.010000	0.462687	
mm_16578.1	chr2	3511128	3511328	-	1	NA	NA	NA	1586	NR_103465	50497	Mm.89341	NM_015765	ENSMUSG00000051396	Hspa14	70kDa|HSP70L1|Hsp70-4|NST-1|hsr.1	heat shock protein 14	protein-coding	0.035000	0.472637	
mm_127261.1	chr15	99710374	99710574	+	1	NA	NA	NA	-7119	NM_010271	14555	Mm.252391	NM_010271	ENSMUSG00000023019	Gpd1	AI747587|Gdc-1|Gdc1|mKIAA4010	glycerol-3-phosphate dehydrogenase 1 (soluble)	protein-coding	0.005000	0.512438	
mm_161988.1	chr19	31908901	31909101	+	1	NA	NA	NA	40240	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.005000	0.368159	
mm_93395.1	chr10	107494689	107494889	-	1	NA	NA	NA	-60	NM_008657	17878	Mm.11	NM_008657	ENSMUSG00000035923	Myf6	MRF4|bHLHc4|herculin	myogenic factor 6	protein-coding	0.010000	0.457711	
mm_3818.1	chr1	159232210	159232410	+	1	NA	NA	NA	-16	NM_011931	26374	Mm.328135	NM_011931	ENSMUSG00000040782	Rfwd2	AI316802|C80879|Cop1	ring finger and WD repeat domain 2	protein-coding	0.140000	0.736318	
mm_151071.1	chr19	47513183	47513383	+	1	NA	NA	NA	301	NR_045322	100503104	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0.035000	0.502488	
mm_2555.1	chr1	110238537	110238737	+	1	NA	NA	NA	254914	NM_172853	241201	Mm.213407	NM_172853	ENSMUSG00000026312	Cdh7	9330156F07Rik|CDH7L1	cadherin 7, type 2	protein-coding	0.000000	0.492537	
mm_131754.1	chr16	22546872	22547072	+	1	NA	NA	NA	-14788	NR_106170	102465887		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0.025000	0.577114	
mm_42070.1	chr5	110099695	110099895	+	1	NA	NA	NA	-174	NM_207279	403178	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0.000000	0.552239	-33(GCTTTAAAACCA,+,0.00)
mm_122184.1	chr14	31618939	31619139	-	1	NA	NA	NA	21926	NM_019975	56794	Mm.38887	NM_019975	ENSMUSG00000021884	Hacl1	1600020H07Rik|Hpcl|Phyh2	2-hydroxyacyl-CoA lyase 1	protein-coding	0.020000	0.412935	-35(GCTTTTAGAACA,+,0.00)
mm_4430.1	chr1	172506478	172506678	+	1	NA	NA	NA	6332	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.025000	0.537313	
mm_59383.1	chr7	26187628	26187828	+	1	NA	NA	NA	14319	NM_010000	13094	Mm.14413	NM_010000	ENSMUSG00000040660	Cyp2b9	Cyp2b	cytochrome P450, family 2, subfamily b, polypeptide 9	protein-coding	0.005000	0.482587	
mm_137943.1	chr17	32686000	32686200	+	1	NA	NA	NA	441	NM_134127	106648	Mm.26539	NM_134127	ENSMUSG00000073424	Cyp4f15	AI787289|Cyp4f-15	cytochrome P450, family 4, subfamily f, polypeptide 15	protein-coding	0.010000	0.542289	
mm_21728.1	chr2	164743004	164743204	-	1	NA	NA	NA	163	NM_027961	71856	Mm.330770	NM_027961	ENSMUSG00000076434	Wfdc3	1700015L13Rik|1700127F16Rik	WAP four-disulfide core domain 3	protein-coding	0.010000	0.527363	
mm_130454.1	chr15	98567413	98567613	-	1	NA	NA	NA	123	NM_009833	12455	Mm.29941	NM_009833	ENSMUSG00000011960	Ccnt1	2810478G24Rik|AI115585|CycT1	cyclin T1	protein-coding	0.105000	0.606965	
mm_86422.1	chr10	3740370	3740570	+	1	NA	NA	NA	93	NM_001159942	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.115000	0.736318	
mm_72879.1	chr8	88950142	88950342	+	1	NA	NA	NA	-74493	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.010000	0.552239	
mm_38112.1	chr4	134535133	134535333	-	1	NA	NA	NA	35	NM_001256112	76824	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	0.115000	0.716418	
mm_114283.1	chr13	58402147	58402347	+	1	NA	NA	NA	-1	NR_031761	74386	Mm.85289	NM_028904	ENSMUSG00000035367	Rmi1	4932432N11Rik|C79893	RecQ mediated genome instability 1	protein-coding	0.130000	0.706468	
mm_127002.1	chr15	95790828	95791028	+	1	NA	NA	NA	85	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.095000	0.681592	
mm_43561.1	chr5	137629086	137629286	+	1	NA	NA	NA	63	NR_033148	100316903	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0.090000	0.711443	
mm_143184.1	chr17	57483423	57483623	-	1	NA	NA	NA	61791	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.005000	0.313433	
mm_74703.1	chr8	16815588	16815788	-	1	NA	NA	NA	-646850	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0.000000	0.442786	
mm_8949.1	chr1	164441467	164441667	-	1	NA	NA	NA	16788	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.040000	0.522388	
mm_160243.1	chr7	104596862	104597062	-	1	NA	NA	NA	217	NM_146820	258817	Mm.377706	NM_146820	ENSMUSG00000051182	Olfr655	MOR38-1	olfactory receptor 655	protein-coding	0.005000	0.487562	
mm_168443.1	chr11	40570198	40570398	-	1	NA	NA	NA	122384	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.000000	0.467662	
mm_50251.1	chr6	42416888	42417088	+	1	NA	NA	NA	11459	NM_199159	387512	Mm.377919	NM_199159	ENSMUSG00000056203	Tas2r135	Tas2r35|mt2r38	taste receptor, type 2, member 135	protein-coding	0.005000	0.313433	43(CCATTTATAGAC,+,0.00)
mm_68234.1	chr7	104507724	104507924	-	1	NA	NA	NA	25	NM_199146	209387	Mm.277377	NM_199146	ENSMUSG00000057596	Trim30d	AI451617|TRIM30-3|Trim79	tripartite motif-containing 30D	protein-coding	0.000000	0.452736	
mm_65785.1	chr7	28808970	28809170	-	1	NA	NA	NA	-1820	NM_177301	15388	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.100000	0.676617	
mm_16680.1	chr2	6872502	6872702	-	1	NA	NA	NA	-567	NM_001347094	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.165000	0.805970	
mm_139161.1	chr17	47551062	47551262	+	1	NA	NA	NA	-42305	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.025000	0.487562	
mm_123807.1	chr14	70521807	70522007	-	1	NA	NA	NA	-1647	NR_033241	12153	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.010000	0.502488	-1(CGGCCTATAAGC,-,0.00)
mm_101316.1	chr11	22853017	22853217	-	1	NA	NA	NA	6618	NM_016888	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.000000	0.557214	
mm_150102.1	chr19	29486858	29487058	+	1	NA	NA	NA	35029	NR_015567	77779	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.015000	0.522388	
mm_85187.1	chr9	96713045	96713245	-	1	NA	NA	NA	18530	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.020000	0.398010	
mm_37880.1	chr4	132422375	132422575	-	1	NA	NA	NA	-29	NM_175306	100169	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0.075000	0.686567	
mm_59852.1	chr7	29941352	29941552	+	1	NA	NA	NA	10441	NM_178384	72723	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77	zinc finger protein 74	protein-coding	0.015000	0.567164	
mm_134313.1	chr16	15887046	15887246	-	1	NA	NA	NA	-140	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.085000	0.656716	
mm_116779.1	chr13	52982812	52983012	-	1	NA	NA	NA	-1873	NM_017373	18030	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0.025000	0.432836	-84(CTGTTTTTAAGC,-,0.00),-82(GTTTTTAAGCAC,+,0.00)
mm_29286.1	chr3	107696418	107696618	-	1	NA	NA	NA	30	NM_145542	229709	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	0.125000	0.696517	
mm_51363.1	chr6	72636175	72636375	+	1	NA	NA	NA	6444	NR_040421	100038714	Mm.321330	NR_040421		Gm15401	ENSMUSG00000072999|OTTMUSG00000021199	predicted gene 15401	ncRNA	0.020000	0.567164	
mm_34162.1	chr4	139574611	139574811	+	1	NA	NA	NA	-9	NM_001205173	212632	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	0.105000	0.736318	
mm_139477.1	chr17	56008478	56008678	+	1	NA	NA	NA	-623	NM_026530	68047	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	0.025000	0.512438	
mm_155107.1	chrX	48400433	48400633	+	1	NA	NA	NA	59175	NM_178782	320376	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	0.020000	0.552239	-36(CCCCATATAAGC,-,0.00)
mm_165230.1	chr2	55726892	55727092	+	1	NA	NA	NA	291022	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.040000	0.487562	-33(CTCCTTAAAAAG,-,0.00),-31(CCTTAAAAAGGG,+,0.00)
mm_163289.1	chr11	118146615	118146815	+	1	NA	NA	NA	-17496	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.015000	0.577114	
mm_57836.1	chr6	129465379	129465579	-	1	NA	NA	NA	7300	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.025000	0.462687	-65(CCGTATTAATGC,-,0.00)
mm_100117.1	chr11	115882796	115882996	+	1	NA	NA	NA	-17243	NM_183259	66528	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	0.010000	0.611940	
mm_37652.1	chr4	128806082	128806282	-	1	NA	NA	NA	-70	NM_001081098	230761	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.180000	0.820896	
mm_76874.1	chr8	105565834	105566034	-	1	NA	NA	NA	106	NM_013477	11972	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0.105000	0.696517	
mm_23528.1	chr3	60626486	60626686	+	1	NA	NA	NA	125407	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.010000	0.358209	
mm_114038.1	chr13	53393534	53393734	+	1	NA	NA	NA	-55	NR_037991	100040421	Mm.83967	NR_037991	ENSMUSG00000107008	Gm2762	1700025I17Rik	predicted gene 2762	ncRNA	0.025000	0.522388	
mm_28007.1	chr3	83031367	83031567	-	1	NA	NA	NA	5314	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.010000	0.467662	
mm_103121.1	chr11	70191225	70191425	-	1	NA	NA	NA	-22585	NM_153081	216867	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0.020000	0.487562	-84(GGTTCTAAATGG,-,0.00)
mm_92038.1	chr10	62494701	62494901	-	1	NA	NA	NA	-7996	NM_133672	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.020000	0.383085	
mm_19922.1	chr2	116018163	116018363	-	1	NA	NA	NA	46356	NM_001346044	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.010000	0.427861	
mm_18621.1	chr2	68472042	68472242	-	1	NA	NA	NA	-161	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.170000	0.805970	
mm_66652.1	chr7	45711452	45711652	-	1	NA	NA	NA	3655	NM_020011	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.050000	0.641791	
mm_52433.1	chr6	113531598	113531798	+	1	NA	NA	NA	16	NM_001347350	211651	Mm.160061	NM_001033244	ENSMUSG00000034023	Fancd2	2410150O07Rik|AU015151|BB137857|FA-D2|FA4|FACD|FAD|FANCD	Fanconi anemia, complementation group D2	protein-coding	0.105000	0.611940	57(GGCTTTTTAGGC,-,0.00)
mm_145376.1	chr18	56737568	56737768	+	1	NA	NA	NA	29855	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.020000	0.447761	-56(TGTTATAAAGGG,-,0.00)
mm_100587.1	chr11	120949007	120949207	+	1	NA	NA	NA	40	NM_001038654	80879	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0.140000	0.746269	
mm_1872.1	chr1	85600748	85600948	+	1	NA	NA	NA	145	NM_001013817	434484	Mm.445821	NM_001013817	ENSMUSG00000070031	Sp140	-	Sp140 nuclear body protein	protein-coding	0.015000	0.552239	
mm_28748.1	chr3	95761784	95761984	-	1	NA	NA	NA	-6907	NM_001163618	71807	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	0.010000	0.492537	
mm_27636.1	chr3	62480099	62480299	-	1	NA	NA	NA	26789	NM_028136	72162	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	0.005000	0.422886	
mm_95546.1	chr11	52306880	52307080	+	1	NA	NA	NA	-23966	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.015000	0.487562	
mm_149333.1	chr19	10848422	10848622	+	1	NA	NA	NA	5978	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.030000	0.497512	
mm_88629.1	chr10	79886715	79886915	+	1	NA	NA	NA	503	NM_015779	50701	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0.035000	0.621891	
mm_90792.1	chr10	7064159	7064359	-	1	NA	NA	NA	-41074	NM_001033391	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.015000	0.457711	
mm_101938.1	chr11	50207471	50207671	-	1	NA	NA	NA	3249	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.045000	0.577114	
mm_117374.1	chr13	71963643	71963843	-	1	NA	NA	NA	-20	NM_010573	16371	Mm.316056	NM_010573	ENSMUSG00000060969	Irx1	-	Iroquois related homeobox 1 (Drosophila)	protein-coding	0.115000	0.731343	
mm_28257.1	chr3	88570373	88570573	-	1	NA	NA	NA	-9198	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.010000	0.432836	
mm_45076.1	chr5	43869376	43869576	-	1	NA	NA	NA	667	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.015000	0.507463	
mm_116046.1	chr13	27249394	27249594	-	1	NA	NA	NA	7064	NM_008865	18776	Mm.37203	NM_008865	ENSMUSG00000038891	Prl3b1	Csh2|Ghd8|PL|Pl-2|Pl2|mPL-II|mplII	prolactin family 3, subfamily b, member 1	protein-coding	0.025000	0.447761	
mm_168117.1	chr10	15896678	15896878	-	1	NA	NA	NA	105001	NR_131087	77538	Mm.128235	NR_131087		C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0.030000	0.437811	
mm_41487.1	chr5	92127205	92127405	+	1	NA	NA	NA	-10633	NM_019490	56041	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0.020000	0.522388	
mm_144028.1	chr17	90036713	90036913	-	1	NA	NA	NA	51555	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.025000	0.348259	
mm_157066.1	chrX	8190146	8190346	-	1	NA	NA	NA	3266	NM_007898	13595	Mm.27183	NM_007898	ENSMUSG00000031168	Ebp	AI255399|Pabp|SI|Td|mSI	phenylalkylamine Ca2+ antagonist (emopamil) binding protein	protein-coding	0.045000	0.572139	
mm_3292.1	chr1	136678070	136678270	+	1	NA	NA	NA	-5226	NR_045324	100503460	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.005000	0.507463	
mm_46495.1	chr5	105132386	105132586	-	1	NA	NA	NA	7066	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.373134	
mm_31317.1	chr4	46138486	46138686	+	1	NA	NA	NA	75	NM_001033201	433702	Mm.389536	NM_001033201	ENSMUSG00000028330	Ncbp1	AU014645|AW538051|CBP80	nuclear cap binding protein subunit 1	protein-coding	0.110000	0.661692	
mm_103222.1	chr11	70656425	70656625	-	1	NA	NA	NA	-651	NM_001136062	13808	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.045000	0.542289	
mm_151928.1	chr19	5800059	5800259	-	1	NA	NA	NA	2513	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.025000	0.512438	
mm_60643.1	chr7	44849506	44849706	+	1	NA	NA	NA	-29	NM_001290694	67605	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	0.060000	0.532338	-6(TGCTTTATAGGC,-,0.00)
mm_117179.1	chr13	63398157	63398357	-	1	NA	NA	NA	33488	NM_001347515	14088	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	0.005000	0.393035	
mm_30807.1	chr4	20041923	20042123	+	1	NA	NA	NA	-29	NM_010281	14590	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0.155000	0.845771	
mm_76357.1	chr8	84772097	84772297	-	1	NA	NA	NA	2172	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.080000	0.601990	
mm_154241.1	chr19	60764100	60764300	-	1	NA	NA	NA	8213	NM_178421	332397	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos homolog 1 (Drosophila)	protein-coding	0.015000	0.368159	-48(CTTTTTATAAAC,+,0.00)
mm_20141.1	chr2	121442494	121442694	-	1	NA	NA	NA	7	NM_145973	269344	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	0.045000	0.656716	
mm_152368.1	chr19	10101736	10101936	-	1	NA	NA	NA	-333	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	0.080000	0.701493	
mm_71533.1	chr8	46934396	46934596	+	1	NA	NA	NA	-52391	NM_177304	320981	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.020000	0.537313	
mm_148226.1	chr18	80345979	80346179	-	1	NA	NA	NA	18175	NM_001190373	240444	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.005000	0.472637	
mm_54433.1	chr6	34176878	34177078	-	1	NA	NA	NA	76	NM_021435	58246	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0.080000	0.601990	
mm_34942.1	chr4	155847408	155847608	+	1	NA	NA	NA	191	NM_010091	13542	Mm.3400	NM_010091	ENSMUSG00000029071	Dvl1	Dvl|mKIAA4029	dishevelled segment polarity protein 1	protein-coding	0.170000	0.825871	
mm_56786.1	chr6	116637783	116637983	-	1	NA	NA	NA	8164	NR_106010	102466793		NR_106010	ENSMUSG00000098334	Mir7043	Gm27776|mmu-mir-7043	microRNA 7043	ncRNA	0.005000	0.512438	
mm_136784.1	chr17	10496338	10496538	+	1	NA	NA	NA	40222	NR_077238	319750	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.035000	0.547264	
mm_148905.1	chr19	6942464	6942664	+	1	NA	NA	NA	2	NM_001285453	12015	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.070000	0.646766	
mm_7005.1	chr1	86467379	86467579	-	1	NA	NA	NA	41150	NM_027966	71863	Mm.179627	NM_027966	ENSMUSG00000036574	1700019O17Rik	-	RIKEN cDNA 1700019O17 gene	protein-coding	0.025000	0.517413	
mm_123626.1	chr14	68122800	68123000	-	1	NA	NA	NA	-852	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.040000	0.497512	
mm_61376.1	chr7	70365287	70365487	+	1	NA	NA	NA	4	NR_045850	434198	Mm.389911	NR_045850	ENSMUSG00000100005	B130024G19Rik	-	RIKEN cDNA B130024G19 gene	ncRNA	0.045000	0.472637	
mm_77410.1	chr8	120588976	120589176	-	1	NA	NA	NA	-1	NM_178856	272551	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.105000	0.651741	-73(GTCTCTATAGGG,-,0.00)
mm_106104.1	chr11	116274103	116274303	-	1	NA	NA	NA	14	NM_146032	217337	Mm.29655	NM_146032	ENSMUSG00000020780	Srp68	2610024I03Rik	signal recognition particle 68	protein-coding	0.090000	0.646766	
mm_27434.1	chr3	51560746	51560946	-	1	NA	NA	NA	-23	NM_080793	73251	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	0.075000	0.651741	
mm_49129.1	chr6	8580535	8580735	+	1	NA	NA	NA	60577	NM_001286729	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.000000	0.248756	
mm_110118.1	chr12	26443841	26444041	-	1	NA	NA	NA	12511	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.393035	
mm_137917.1	chr17	32321299	32321499	+	1	NA	NA	NA	-161	NR_131218	56399	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	0.090000	0.626866	
mm_152149.1	chr19	7217426	7217626	-	1	NA	NA	NA	90	NM_007750	12868	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0.110000	0.661692	
mm_66430.1	chr7	44668284	44668484	-	1	NA	NA	NA	2459	NM_001271540	71960	Mm.158289	NM_028021	ENSMUSG00000030739	Myh14	2400004E04Rik|II-C|NHMCII|NMHC II-C	myosin, heavy polypeptide 14	protein-coding	0.025000	0.636816	
mm_92872.1	chr10	82316451	82316651	-	1	NA	NA	NA	-75276	NM_001105557	237411		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding	0.000000	0.422886	
mm_14046.1	chr2	122298801	122299001	+	1	NA	NA	NA	1	NM_025777	66811	Mm.171333	NM_025777	ENSMUSG00000027225	Duoxa2	9030623N16Rik|Nip2	dual oxidase maturation factor 2	protein-coding	0.055000	0.577114	-34(TCCTATAAAAGG,-,0.00)
mm_85592.1	chr9	107334477	107334677	-	1	NA	NA	NA	3773	NM_133984	69536	Mm.259467	NM_133984	ENSMUSG00000032579	Hemk1	2310008M14Rik|AW049265	HemK methyltransferase family member 1	protein-coding	0.010000	0.572139	
mm_6641.1	chr1	79439909	79440109	-	1	NA	NA	NA	81	NM_009129	20254	Mm.5038	NM_009129	ENSMUSG00000050711	Scg2	Chgc|SgII	secretogranin II	protein-coding	0.050000	0.542289	-49(CTCTCTATAAGC,-,0.00)
mm_169481.1	chr14	73194317	73194517	-	1	NA	NA	NA	12434	NR_030459	751541		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.080000	0.552239	
mm_72817.1	chr8	88118662	88118862	+	1	NA	NA	NA	3	NM_029074	382030	Mm.216574	NM_029074	ENSMUSG00000036810	Cnep1r1	5033428A16Rik|NEP1-R1|Tmem188	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding	0.085000	0.621891	
mm_18661.1	chr2	70726034	70726234	-	1	NA	NA	NA	64625	NM_027352	70231	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|ENSMUSG00000075299|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.000000	0.338308	
mm_64725.1	chr7	4660500	4660700	-	1	NA	NA	NA	-1650	NM_172894	243819	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.000000	0.542289	
mm_91834.1	chr10	57516401	57516601	-	1	NA	NA	NA	16028	NM_019760	56442	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	0.030000	0.412935	
mm_30486.1	chr3	155055256	155055456	-	1	NA	NA	NA	51	NM_177066	435766	Mm.210428	NM_177066	ENSMUSG00000040086	Tnni3k	Cark|D830019J24Rik	TNNI3 interacting kinase	protein-coding	0.020000	0.417910	
mm_1781.1	chr1	78511813	78512013	+	1	NA	NA	NA	853	NM_026713	68393	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	0.075000	0.641791	
mm_96152.1	chr11	61208641	61208841	+	1	NA	NA	NA	-1	NM_007436	11670	Mm.4257	NM_007436	ENSMUSG00000019102	Aldh3a1	Ahd-4|Ahd4|Aldh|Aldh3	aldehyde dehydrogenase family 3, subfamily A1	protein-coding	0.025000	0.497512	
mm_3792.1	chr1	157412572	157412772	+	1	NA	NA	NA	-77	NM_177644	226525	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	0.105000	0.636816	
mm_126606.1	chr15	82642060	82642260	+	1	NA	NA	NA	-115	NR_003552	68444	Mm.443212	NR_003552		Cyp2d13	1300007K12Rik	cytochrome P450, family 2, subfamily d, polypeptide 13	pseudo	0.005000	0.487562	-95(CACCTTATAAAG,-,0.00),-93(CCTTATAAAGGA,+,0.00)
mm_94182.1	chr10	128923392	128923592	-	1	NA	NA	NA	32	NM_015740	14533	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	0.055000	0.592040	
mm_158958.1	chr1	91250495	91250695	+	1	NA	NA	NA	276	NM_026454	67921	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0.165000	0.810945	
mm_53745.1	chr6	145182223	145182423	+	1	NA	NA	NA	28647	NM_177222	320662	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	0.020000	0.542289	
mm_99297.1	chr11	101337670	101337870	+	1	NA	NA	NA	7164	NM_009675	11754	Mm.67281	NM_009675	ENSMUSG00000019326	Aoc3	SSAO|VAP1	amine oxidase, copper containing 3	protein-coding	0.025000	0.527363	
mm_65527.1	chr7	25788403	25788603	-	1	NA	NA	NA	230	NM_001190974	26362	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.030000	0.641791	
mm_169244.1	chr13	74768058	74768258	-	1	NA	NA	NA	2578	NM_001301156	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.015000	0.477612	
mm_91538.1	chr10	39369478	39369678	-	1	NA	NA	NA	-221	NM_001122892	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.075000	0.641791	
mm_129492.1	chr15	78802803	78803003	-	1	NA	NA	NA	139	NM_130859	105844	Mm.17629	NM_130859	ENSMUSG00000033170	Card10	AI449026|Bimp1|Carma3	caspase recruitment domain family, member 10	protein-coding	0.125000	0.756219	
mm_134206.1	chr16	11151648	11151848	-	1	NA	NA	NA	-17216	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.015000	0.388060	
mm_52649.1	chr6	117179877	117180077	+	1	NA	NA	NA	11442	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.005000	0.378109	
mm_23150.1	chr3	40410062	40410262	+	1	NA	NA	NA	112750	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.005000	0.323383	
mm_133078.1	chr16	58733679	58733879	+	1	NA	NA	NA	5869	NM_001252451	224250	Mm.29482	NM_171826	ENSMUSG00000022744	Cldnd1	1110019C08Rik|AA407103|AI849195|AW489850|Cldn25	claudin domain containing 1	protein-coding	0.000000	0.412935	23(GCTTATTAAAGA,-,0.00)
mm_165886.1	chr4	42952727	42952927	+	1	NA	NA	NA	-267	NM_019874	56323	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.020000	0.597015	
mm_142843.1	chr17	51796200	51796400	-	1	NA	NA	NA	15754	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.005000	0.437811	
mm_118586.1	chr14	20348214	20348414	+	1	NA	NA	NA	152	NM_001177633	105428	Mm.206990	NM_172379	ENSMUSG00000039599	Fam149b	AA536717|AI428773|Fam149b1|mKIAA0974	family with sequence similarity 149, member B	protein-coding	0.095000	0.721393	
mm_121321.1	chr14	111675924	111676124	+	1	NA	NA	NA	909	NM_198865	75409	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0.125000	0.786070	
mm_34834.1	chr4	155250006	155250206	+	1	NA	NA	NA	140	NR_033802	67513	Mm.10374	NM_001190445	ENSMUSG00000073684	Faap20	2610002J02Rik	Fanconi anemia core complex associated protein 20	protein-coding	0.120000	0.731343	
mm_163458.1	chr12	98650667	98650867	+	1	NA	NA	NA	22625	NM_001289574	104871	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	0.015000	0.482587	
mm_136789.1	chr17	10865001	10865201	+	1	NA	NA	NA	24742	NM_016694	50873	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.000000	0.298507	
mm_40260.1	chr5	38260279	38260479	+	1	NA	NA	NA	4	NM_025480	66309	Mm.256185	NM_025480	ENSMUSG00000067365	Tmem128	2810021O14Rik	transmembrane protein 128	protein-coding	0.110000	0.616915	
mm_118598.1	chr14	20694895	20695095	+	1	NA	NA	NA	27	NM_028428	73068	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	0.095000	0.696517	
mm_86211.1	chr9	120011112	120011312	-	1	NA	NA	NA	12386	NM_011724	22437	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.130000	0.711443	
mm_31544.1	chr4	55480158	55480358	+	1	NA	NA	NA	52217	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.025000	0.537313	
mm_76659.1	chr8	93229534	93229734	-	1	NA	NA	NA	-15	NM_133660	13897	Mm.63490	NM_133660	ENSMUSG00000061959	Ces1e	Eg|Es-22|Es22|egasyn	carboxylesterase 1E	protein-coding	0.000000	0.412935	
mm_27120.1	chr3	31310125	31310325	-	1	NA	NA	NA	94	NM_172861	241919	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.045000	0.572139	
mm_150701.1	chr19	42255781	42255981	+	1	NA	NA	NA	142	NM_027694	71146	Mm.329851	NM_027694	ENSMUSG00000042532	Golga7b	4933417O08Rik|AI839934	golgi autoantigen, golgin subfamily a, 7B	protein-coding	0.115000	0.746269	
mm_116269.1	chr13	34652581	34652781	-	1	NA	NA	NA	0	NM_025831	66895	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0.130000	0.716418	-33(TGCCTTATAAAG,-,0.00),-31(CCTTATAAAGCC,+,0.00)
mm_41684.1	chr5	100210594	100210794	+	1	NA	NA	NA	2	NR_040679	69571	Mm.396412	NR_040679	ENSMUSG00000100157	2310034O05Rik	-	RIKEN cDNA 2310034O05 gene	ncRNA	0.030000	0.492537	
mm_105764.1	chr11	109607622	109607822	-	1	NA	NA	NA	3667	NM_145940	52639	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0.010000	0.368159	
mm_99477.1	chr11	102604366	102604566	+	1	NA	NA	NA	35	NM_020510	57265	Mm.36416	NM_020510	ENSMUSG00000050288	Fzd2	AL033370|AW456835|Fz10|Fzd10|Mfz10|Mfz10a	frizzled class receptor 2	protein-coding	0.080000	0.686567	
mm_50868.1	chr6	55451750	55451950	+	1	NA	NA	NA	-128	NM_001025372	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	0.050000	0.661692	
mm_22945.1	chr3	32067193	32067393	+	1	NA	NA	NA	164590	NM_028231	72413	Mm.64790	NM_028231	ENSMUSG00000037610	Kcnmb2	2700049B16Rik|3110031N04Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 2	protein-coding	0.000000	0.502488	-34(GTCTAGAAAAGG,-,0.00)
mm_10079.1	chr1	195131420	195131620	-	1	NA	NA	NA	50	NM_013499	12946	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	0.015000	0.447761	-95(ATTTTTAAAAGG,-,0.00)
mm_146996.1	chr18	34371744	34371944	-	1	NA	NA	NA	1571	NM_007874	13476	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0.005000	0.477612	-80(GATTTTAAAAAG,-,0.00),-78(TTTTAAAAAGGC,+,0.00)
mm_59031.1	chr7	19304691	19304891	+	1	NA	NA	NA	5254	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.050000	0.567164	
mm_89517.1	chr10	94312056	94312256	+	1	NA	NA	NA	-13453	NR_033209	215472	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	0.095000	0.681592	
mm_105035.1	chr11	100545486	100545686	-	1	NA	NA	NA	-46	NM_028918	74407	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0.090000	0.681592	
mm_8377.1	chr1	151250625	151250825	-	1	NA	NA	NA	-93773	NM_001039512	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.025000	0.437811	
mm_92429.1	chr10	77113015	77113215	-	1	NA	NA	NA	590	NM_001109991	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.015000	0.587065	
mm_21994.1	chr2	167654838	167655038	-	1	NA	NA	NA	6606	NM_145538	407243	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.000000	0.522388	
mm_112955.1	chr13	21179374	21179574	+	1	NA	NA	NA	-457	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.040000	0.592040	
mm_39661.1	chr5	25100856	25101056	+	1	NA	NA	NA	-19	NR_027851	67261	Mm.461781	NM_026059	ENSMUSG00000043833	2900005J15Rik	-	RIKEN cDNA 2900005J15 gene	ncRNA	0.120000	0.741294	
mm_74800.1	chr8	22476555	22476755	-	1	NA	NA	NA	-45	NM_011394	20516	Mm.323901	NM_011394	ENSMUSG00000037656	Slc20a2	MolPit2|Pit-2|Pit2|Ram-1|Ram1	solute carrier family 20, member 2	protein-coding	0.160000	0.815920	
mm_106641.1	chr11	120991222	120991422	-	1	NA	NA	NA	11	NM_139059	104318	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0.095000	0.681592	
mm_25633.1	chr3	119903256	119903456	+	1	NA	NA	NA	-119968	NM_019550	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.000000	0.477612	
mm_91153.1	chr10	20505441	20505641	-	1	NA	NA	NA	42787	NM_001347366	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.020000	0.487562	65(GCATTTAAAGCA,+,0.00)
mm_17671.1	chr2	32167854	32168054	-	1	NA	NA	NA	16806	NM_001159634	227723	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0.020000	0.572139	
mm_169172.1	chr13	65639681	65639881	+	1	NA	NA	NA	360927	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.020000	0.527363	
mm_4709.1	chr1	180942239	180942439	+	1	NA	NA	NA	-179	NM_144794	208795	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.090000	0.636816	
mm_105401.1	chr11	103412590	103412790	-	1	NA	NA	NA	-26	NM_183034	353047	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.110000	0.686567	
mm_98637.1	chr11	96177265	96177465	+	1	NA	NA	NA	-16996	NM_008267	15408	Mm.57221	NM_008267	ENSMUSG00000049604	Hoxb13	-	homeobox B13	protein-coding	0.015000	0.393035	
mm_109700.1	chr12	113185807	113186007	+	1	NA	NA	NA	4	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.160000	0.815920	
mm_151301.1	chr19	55741726	55741926	+	1	NA	NA	NA	16	NM_001142923	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.065000	0.552239	
mm_81329.1	chr9	108516862	108517062	+	1	NA	NA	NA	-125	NM_001114119	69232	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik	glutamine-rich 1	protein-coding	0.070000	0.666667	
mm_168184.1	chr10	59395539	59395739	+	1	NA	NA	NA	-8046	NM_023530	69836	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	0.070000	0.517413	-42(GCATTTAAAAAG,-,0.00)
mm_36757.1	chr4	101346850	101347050	-	1	NA	NA	NA	77	NR_029537	387143		NR_029537	ENSMUSG00000065451	Mir101a	Mirn101|Mirn101a|miR-101|mir-101a	microRNA 101a	ncRNA	0.030000	0.552239	
mm_86194.1	chr9	119578946	119579146	-	1	NA	NA	NA	-30	NM_021544	20271	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding	0.170000	0.860697	
mm_43554.1	chr5	137601258	137601458	+	1	NA	NA	NA	-299	NM_030037	68929	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	0.035000	0.422886	
mm_156600.1	chrX	152434062	152434262	+	1	NA	NA	NA	65134	NR_045452	75693	Mm.287381	NR_045451	ENSMUSG00000084885	3010001F23Rik	-	RIKEN cDNA 3010001F23 gene	ncRNA	0.010000	0.398010	-86(GGATTTAAAAAC,-,0.00),5(TTTTTAATAGTC,+,0.00)
mm_151792.1	chr19	5402372	5402572	-	1	NA	NA	NA	-4343	NR_015545	74931	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	0.010000	0.532338	
mm_126946.1	chr15	92051183	92051383	+	1	NA	NA	NA	118	NM_001159648	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.055000	0.661692	
mm_73034.1	chr8	94180137	94180337	+	1	NA	NA	NA	1148	NM_013602	17748	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.060000	0.512438	
mm_137575.1	chr17	27857144	27857344	+	1	NA	NA	NA	737	NM_001080769	224648	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	0.045000	0.542289	
mm_73438.1	chr8	106161178	106161378	+	1	NA	NA	NA	-7597	NM_178798	330836	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	0.060000	0.616915	
mm_139122.1	chr17	47468258	47468458	+	1	NA	NA	NA	-30983	NM_029296	75462	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.050000	0.611940	
mm_134215.1	chr16	11227464	11227664	-	1	NA	NA	NA	24181	NR_038156	69918	Mm.440400	NR_038154		2610020C07Rik	-	RIKEN cDNA 2610020C07 gene	ncRNA	0.005000	0.363184	
mm_4908.1	chr1	190170191	190170391	+	1	NA	NA	NA	389	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding	0.070000	0.577114	
mm_75793.1	chr8	70095973	70096173	-	1	NA	NA	NA	6513	NR_106033	102465646		NR_106033	ENSMUSG00000099042	Mir7066	Gm27290|mmu-mir-7066	microRNA 7066	ncRNA	0.005000	0.542289	-40(AGCCATTAAAGG,-,0.00),-38(CCATTAAAGGGG,+,0.00)
mm_126047.1	chr15	76904899	76905099	+	1	NA	NA	NA	928	NM_012053	26961	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0.050000	0.611940	
mm_24511.1	chr3	92584332	92584532	+	1	NA	NA	NA	4592	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.010000	0.601990	
mm_4439.1	chr1	172506843	172507043	+	1	NA	NA	NA	6697	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.000000	0.492537	
mm_121856.1	chr14	20664485	20664685	-	1	NA	NA	NA	-11	NM_001310432	68760	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	0.005000	0.592040	38(GGGCTTTAAAGG,-,0.00),39(GGCTTTAAAGGG,-,0.00),40(GCTTTAAAGGGC,+,0.00),41(CTTTAAAGGGCC,+,0.00)
mm_165310.1	chr2	102781896	102782096	+	1	NA	NA	NA	75558	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.005000	0.457711	
mm_23800.1	chr3	79877172	79877372	+	1	NA	NA	NA	-8658	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.020000	0.437811	
mm_138861.1	chr17	42645217	42645417	+	1	NA	NA	NA	-34004	NM_181753	353344	Mm.184937	NM_181753	ENSMUSG00000043972	Opn5	Gpr136|Neuropsin|PGR12|TMEM13	opsin 5	protein-coding	0.010000	0.512438	
mm_251.1	chr1	19235676	19235876	+	1	NA	NA	NA	23722	NM_001025305	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.000000	0.402985	-42(GTTTTAATGGGG,+,0.00)
mm_108844.1	chr12	98268540	98268740	+	1	NA	NA	NA	5	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.010000	0.447761	-68(TCATTAAAAGGC,+,0.00)
mm_69853.1	chr7	141429292	141429492	-	1	NA	NA	NA	28	NM_021316	57754	Mm.87027	NM_021316	ENSMUSG00000060240	Cend1	1500001H12Rik|AI415214|BM88	cell cycle exit and neuronal differentiation 1	protein-coding	0.075000	0.646766	
mm_111238.1	chr12	84772858	84773058	-	1	NA	NA	NA	154	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.070000	0.616915	
mm_70678.1	chr8	14974871	14975071	+	1	NA	NA	NA	-36054	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.035000	0.487562	
mm_171126.1	chr3	144828288	144828488	+	1	NA	NA	NA	-8894	NM_030601	80797	Mm.20897	NM_030601	ENSMUSG00000028262	Clca3a2	Clca2	chloride channel accessory 3A2	protein-coding	0.040000	0.492537	-83(CCTTTAATACTC,+,0.00)
mm_23068.1	chr3	36066015	36066215	+	1	NA	NA	NA	115	NM_172678	229211	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	0.110000	0.681592	
mm_167262.1	chr8	27031217	27031417	+	1	NA	NA	NA	7518	NM_153592	244373	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.010000	0.512438	
mm_61909.1	chr7	90137609	90137809	+	1	NA	NA	NA	7477	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.328358	
mm_137091.1	chr17	21516908	21517108	+	1	NA	NA	NA	-18531	NM_144515	22710	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	0.040000	0.577114	
mm_90184.1	chr10	120112992	120113192	+	1	NA	NA	NA	-127	NM_080446	117599	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.060000	0.626866	12(CTTTTTAGAGGT,+,0.00)
mm_157936.1	chrX	83772510	83772710	-	1	NA	NA	NA	-284686	NM_021898	100502723	Mm.383210	NM_021898	ENSMUSG00000035522	Tsga8	Halap-X|Halapx	testis specific gene A8	protein-coding	0.005000	0.412935	
mm_107577.1	chr12	44525460	44525660	+	1	NA	NA	NA	196675	NM_001146031	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.015000	0.462687	
mm_27501.1	chr3	55055410	55055610	-	1	NA	NA	NA	268	NR_040593	70970	Mm.251485	NR_040593	ENSMUSG00000106589	4931419H13Rik	-	RIKEN cDNA 4931419H13 gene	ncRNA	0.115000	0.736318	
mm_79962.1	chr9	66350350	66350550	+	1	NA	NA	NA	0	NM_145617	235439	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.135000	0.676617	
mm_4623.1	chr1	179546233	179546433	+	1	NA	NA	NA	-57	NM_001331054	15278	Mm.293529	NM_008249	ENSMUSG00000026492	Tfb2m	Hkp1	transcription factor B2, mitochondrial	protein-coding	0.100000	0.631841	
mm_129464.1	chr15	78597678	78597878	-	1	NA	NA	NA	731	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.005000	0.572139	
mm_157167.1	chrX	9467807	9468007	-	1	NA	NA	NA	1417	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.020000	0.383085	-55(CCTTTTAAATTA,+,0.00)
mm_4208.1	chr1	171250456	171250656	+	1	NA	NA	NA	427	NM_172845	240913	Mm.491147	NM_172845	ENSMUSG00000006403	Adamts4	ADAM-TS4|ADAMTS-2|ADMP-1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	protein-coding	0.015000	0.542289	
mm_153272.1	chr19	37175930	37176130	-	1	NA	NA	NA	33	NM_001290826	208922	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.015000	0.517413	
mm_37987.1	chr4	133625515	133625715	-	1	NA	NA	NA	7814	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.020000	0.582090	
mm_164846.1	chr18	44174891	44175091	-	1	NA	NA	NA	82	NM_183123	77424	Mm.99224	NM_183123	ENSMUSG00000053729	Spinkl	9530002K18Rik	serine protease inhibitor, Kazal type-like	protein-coding	0.005000	0.343284	
mm_63184.1	chr7	125552146	125552346	+	1	NA	NA	NA	-36	NM_001008700	16190	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0.105000	0.656716	
mm_35524.1	chr4	41275005	41275205	-	1	NA	NA	NA	30	NM_026872	68926	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0.100000	0.651741	
mm_131357.1	chr16	13729726	13729926	+	1	NA	NA	NA	-10	NR_040574	76684	Mm.491043	NR_040574		Pla2g10os	1810007I06Rik	phospholipase A2, group X, opposite strand	ncRNA	0.015000	0.587065	
mm_50822.1	chr6	54460175	54460375	+	1	NA	NA	NA	7392	NM_001167861	330319	Mm.434326	NM_001167860	ENSMUSG00000086040	Wipf3	9030621G03|BQ952480	WAS/WASL interacting protein family, member 3	protein-coding	0.010000	0.417910	
mm_40293.1	chr5	43515381	43515581	+	1	NA	NA	NA	-88	NM_001135172	109323	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	0.030000	0.492537	
mm_146443.1	chr18	84952007	84952207	+	1	NA	NA	NA	-583	NM_025969	67105	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	tranlocase of inner mitochondrial membrane 21	protein-coding	0.100000	0.641791	
mm_109727.1	chr12	116373861	116374061	+	1	NA	NA	NA	31200	NR_028421	319545	Mm.390543	NR_028421		D430020J02Rik	-	RIKEN cDNA D430020J02 gene	ncRNA	0.000000	0.303483	
mm_121087.1	chr14	99298584	99298784	+	1	NA	NA	NA	-7	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.080000	0.686567	
mm_162004.1	chr19	40451244	40451444	-	1	NA	NA	NA	54	NM_001034962	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.005000	0.462687	
mm_90699.1	chr10	130330907	130331107	+	1	NA	NA	NA	8155	NM_183264	67596	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	0.000000	0.432836	
mm_143360.1	chr17	67308270	67308470	-	1	NA	NA	NA	46089	NM_008984	19274	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.000000	0.248756	
mm_143103.1	chr17	57087485	57087685	-	1	NA	NA	NA	197	NM_009451	22153	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	0.100000	0.671642	
mm_104949.1	chr11	100135415	100135615	-	1	NA	NA	NA	434	NM_008469	16665	Mm.440010	NM_008469	ENSMUSG00000054146	Krt15	AI528832|K15|Krt1-15	keratin 15	protein-coding	0.030000	0.572139	
mm_118327.1	chr13	113663523	113663723	-	1	NA	NA	NA	53	NM_019960	56534	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	0.045000	0.522388	-67(GGCTATAAATAG,-,0.00),-65(CTATAAATAGCC,+,0.00)
mm_27923.1	chr3	79539655	79539855	-	1	NA	NA	NA	27924	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.000000	0.417910	-35(GGCCATATATAG,-,0.00),-33(CCATATATAGCT,+,0.00)
mm_138920.1	chr17	43611269	43611469	+	1	NA	NA	NA	18930	NM_001161366	210510	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	0.025000	0.427861	
mm_98493.1	chr11	94951514	94951714	+	1	NA	NA	NA	15390	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.025000	0.562189	
mm_116816.1	chr13	54504218	54504418	-	1	NA	NA	NA	513	NM_176987	319719	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	0.090000	0.691542	
mm_131572.1	chr16	18248901	18249101	+	1	NA	NA	NA	118	NM_001081000	15547	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	0.095000	0.656716	
mm_161501.1	chr15	89454016	89454216	+	1	NA	NA	NA	205	NM_021921	60597	Mm.173337	NM_021921	ENSMUSG00000022619	Mapk8ip2	3230402N03Rik|AI847694|AW049958|IB2|Jip2|R75148	mitogen-activated protein kinase 8 interacting protein 2	protein-coding	0.115000	0.751244	
mm_159825.1	chr5	123703488	123703688	-	1	NA	NA	NA	17456	NM_027494	70650	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0.010000	0.447761	
mm_161329.1	chr14	50360610	50360810	+	1	NA	NA	NA	2796	NM_205819	239081	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	0.005000	0.447761	85(GACCCTAAAAAG,-,0.00),87(CCCTAAAAAGAG,+,0.00)
mm_115537.1	chr13	6636570	6636770	-	1	NA	NA	NA	12101	NM_019703	56421	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.020000	0.492537	54(CTCTTTAAAGTG,+,0.00)
mm_9833.1	chr1	184033618	184033818	-	1	NA	NA	NA	280	NM_028516	73363	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.095000	0.686567	
mm_24796.1	chr3	95546700	95546900	+	1	NA	NA	NA	-12877	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.025000	0.467662	
mm_5794.1	chr1	51941196	51941396	-	1	NA	NA	NA	-25318	NM_001161817	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.030000	0.467662	
mm_150204.1	chr19	32775943	32776143	+	1	NA	NA	NA	18466	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.000000	0.263682	
mm_63325.1	chr7	126942014	126942214	+	1	NA	NA	NA	7467	NM_001347657	233879	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0.020000	0.552239	
mm_15399.1	chr2	156721758	156721958	+	1	NA	NA	NA	579	NM_001042487	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.050000	0.597015	
mm_67585.1	chr7	83631711	83631911	-	1	NA	NA	NA	-206	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.045000	0.562189	
mm_20945.1	chr2	151563516	151563716	-	1	NA	NA	NA	-9007	NM_145535	228765	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0.015000	0.442786	
mm_139501.1	chr17	56303240	56303440	+	1	NA	NA	NA	3	NM_001111079	18140	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	0.055000	0.577114	
mm_141830.1	chr17	34627956	34628156	-	1	NA	NA	NA	-40	NM_001302394	54397	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	0.045000	0.597015	-32(GCCCATATAAGG,-,0.00),-30(CCATATAAGGTG,+,0.00)
mm_37427.1	chr4	122885956	122886156	-	1	NA	NA	NA	1	NM_007598	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.070000	0.636816	
mm_83429.1	chr9	44986439	44986639	-	1	NA	NA	NA	4753	NM_013487	12500	Mm.4527	NM_013487	ENSMUSG00000032094	Cd3d	T3d	CD3 antigen, delta polypeptide	protein-coding	0.010000	0.577114	
mm_117423.1	chr13	74363843	74364043	-	1	NA	NA	NA	57	NM_001033042	432779	Mm.324679	NM_001033042	ENSMUSG00000021579	Lrrc14b	AI595366	leucine rich repeat containing 14B	protein-coding	0.035000	0.527363	-90(AGCTATAAATAG,-,0.00),-88(CTATAAATAGCC,+,0.00)
mm_166311.1	chr5	106926462	106926662	-	1	NA	NA	NA	-672	NM_001252516	330149	Mm.121664	NM_177873	ENSMUSG00000043410	Hfm1	A330009G12Rik|Gm1046|Mer3|Sec63d1	HFM1, ATP-dependent DNA helicase homolog	protein-coding	0.010000	0.407960	
mm_51928.1	chr6	91440896	91441096	+	1	NA	NA	NA	9	NR_038153	69798	Mm.229265	NR_038153	ENSMUSG00000100680	1810044D09Rik	-	RIKEN cDNA 1810044D09 gene	ncRNA	0.080000	0.597015	
mm_139511.1	chr17	56425561	56425761	+	1	NA	NA	NA	-6752	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0.155000	0.761194	
mm_147341.1	chr18	43059433	43059633	-	1	NA	NA	NA	-62	NM_028392	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.030000	0.522388	
mm_40142.1	chr5	35166340	35166540	+	1	NA	NA	NA	-60743	NM_013587	16976	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.000000	0.497512	
mm_79217.1	chr9	49340258	49340458	+	1	NA	NA	NA	-304	NM_010077	13489	Mm.41970	NM_010077	ENSMUSG00000032259	Drd2	D2R|Drd-2	dopamine receptor D2	protein-coding	0.105000	0.766169	
mm_114535.1	chr13	73627091	73627291	+	1	NA	NA	NA	190	NM_009354	21752	Mm.10109	NM_009354	ENSMUSG00000021611	Tert	EST2|TCS1|TP2|TR|TRT	telomerase reverse transcriptase	protein-coding	0.055000	0.666667	
mm_28946.1	chr3	99981222	99981422	-	1	NA	NA	NA	95905	NM_028892	74362	Mm.55847	NM_028892	ENSMUSG00000027867	Spag17	4931427F14Rik|PF6|Spag17-ps	sperm associated antigen 17	protein-coding	0.020000	0.412935	
mm_7122.1	chr1	90780260	90780460	-	1	NA	NA	NA	63611	NM_001243009	12835	Mm.7562	NM_009935	ENSMUSG00000048126	Col6a3	AI507288|Col6a-3	collagen, type VI, alpha 3	protein-coding	0.005000	0.462687	
mm_113028.1	chr13	23492179	23492379	+	1	NA	NA	NA	-3422	NM_001289614	238555	Mm.129668	NM_175938	ENSMUSG00000053216	Btn2a2	Btn2|D030063K05	butyrophilin, subfamily 2, member A2	protein-coding	0.030000	0.432836	-36(GTCCTTTAAAGG,-,0.00),-35(TCCTTTAAAGGA,+,0.00),-35(TCCTTTAAAGGA,-,0.00),-34(CCTTTAAAGGAC,+,0.00)
mm_170609.1	chr19	5845332	5845532	-	1	NA	NA	NA	46	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.025000	0.542289	-80(GAGTATAAAAGC,-,0.00)
mm_111024.1	chr12	79089609	79089809	-	1	NA	NA	NA	-39	NM_029988	110417	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	0.085000	0.641791	
mm_74780.1	chr8	22006484	22006684	-	1	NA	NA	NA	35988	NM_026459	67929	Mm.60688	NM_026459	ENSMUSG00000017049	Ccdc70	1700112P19Rik	coiled-coil domain containing 70	protein-coding	0.015000	0.532338	-73(GCCTCTTTGAGG,-,0.00)
mm_76386.1	chr8	84842514	84842714	-	1	NA	NA	NA	-1949	NM_009010	19358	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.010000	0.527363	
mm_53729.1	chr6	145121040	145121240	+	1	NA	NA	NA	-599	NM_008511	16970	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.045000	0.492537	
mm_38848.1	chr4	149307594	149307794	-	1	NA	NA	NA	4	NM_207682	16561	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0.145000	0.726368	
mm_154978.1	chrX	37826916	37827116	+	1	NA	NA	NA	-39	NM_008955	19202	Mm.10105	NM_008955	ENSMUSG00000006200	Rhox6	AV213605|AW548842|Psx1	reproductive homeobox 6	protein-coding	0.060000	0.542289	
mm_106362.1	chr11	118393846	118394046	-	1	NA	NA	NA	7985	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.035000	0.577114	
mm_162883.1	chr10	102388896	102389096	+	1	NA	NA	NA	14559	NM_026243	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.020000	0.383085	
mm_41562.1	chr5	93120089	93120289	+	1	NA	NA	NA	26773	NM_001347377	52398	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.015000	0.293532	
mm_74779.1	chr8	21993308	21993508	-	1	NA	NA	NA	22812	NM_026459	67929	Mm.60688	NM_026459	ENSMUSG00000017049	Ccdc70	1700112P19Rik	coiled-coil domain containing 70	protein-coding	0.025000	0.393035	-64(TCCTTTATAGGA,+,0.00)
mm_85209.1	chr9	96787797	96787997	-	1	NA	NA	NA	22335	NR_102296	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	0.015000	0.482587	
mm_16229.1	chr2	173155966	173156166	+	1	NA	NA	NA	2993	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.020000	0.557214	
mm_155481.1	chrX	73675435	73675635	+	1	NA	NA	NA	2402	NM_001142809	102857	Mm.274553	NM_133987	ENSMUSG00000019558	Slc6a8	AA589632|CRT|CRTR|CT1|CTR5|Creat	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	protein-coding	0.005000	0.582090	
mm_158719.1	chrX	162829291	162829491	-	1	NA	NA	NA	63	NM_001290776	353170	Mm.270186	NM_178935	ENSMUSG00000038344	Txlng	4932441K18Rik|Fiat|Lrp	taxilin gamma	protein-coding	0.070000	0.616915	
mm_43012.1	chr5	123893722	123893922	+	1	NA	NA	NA	-13453	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.010000	0.407960	
mm_4034.1	chr1	165774195	165774395	+	1	NA	NA	NA	10515	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.045000	0.626866	
mm_149612.1	chr19	16385770	16385970	+	1	NA	NA	NA	-49797	NM_008137	14675	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.005000	0.388060	-61(GCTTTTATACGA,+,0.00)
mm_124924.1	chr15	12136479	12136679	+	1	NA	NA	NA	18728	NM_011767	22763	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.015000	0.572139	
mm_83432.1	chr9	44998845	44999045	-	1	NA	NA	NA	10645	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.005000	0.502488	62(CCATTTATAGAT,+,0.00)
mm_140454.1	chr17	88627361	88627561	+	1	NA	NA	NA	906	NM_029858	77057	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.030000	0.462687	
mm_93884.1	chr10	125328292	125328492	-	1	NA	NA	NA	143	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.035000	0.497512	
mm_111320.1	chr12	86078822	86079022	-	1	NA	NA	NA	119	NM_009368	21809	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.055000	0.557214	
mm_57743.1	chr6	129049741	129049941	-	1	NA	NA	NA	3940	NR_024263	232408	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.025000	0.517413	
mm_151577.1	chr19	61151755	61151955	+	1	NA	NA	NA	-11015	NR_131954	414758	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0.045000	0.572139	
mm_30794.1	chr4	19737273	19737473	+	1	NA	NA	NA	-28369	NR_074090	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.000000	0.393035	
mm_37439.1	chr4	123138639	123138839	-	1	NA	NA	NA	1202	NM_019489	56031	Mm.126873	NM_019489	ENSMUSG00000028651	Ppie	2010010D16Rik|Cyp33	peptidylprolyl isomerase E (cyclophilin E)	protein-coding	0.005000	0.457711	
mm_23418.1	chr3	58548803	58549003	+	1	NA	NA	NA	-23019	NM_030685	28146	Mm.29702	NM_030685	ENSMUSG00000027808	Serp1	D3Ucla1|Ramp4	stress-associated endoplasmic reticulum protein 1	protein-coding	0.005000	0.417910	11(GCTTATAGACCT,+,0.00)
mm_156322.1	chrX	137374548	137374748	+	1	NA	NA	NA	-196106	NM_030688	60367	Mm.328321	NM_030688	ENSMUSG00000059203	Il1rapl2	-	interleukin 1 receptor accessory protein-like 2	protein-coding	0.000000	0.512438	
mm_46990.1	chr5	115333982	115334182	-	1	NA	NA	NA	6905	NR_036616	108014	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0.010000	0.442786	
mm_7306.1	chr1	97977217	97977417	-	1	NA	NA	NA	70476	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA	0.045000	0.507463	
mm_122482.1	chr14	45664322	45664522	-	1	NA	NA	NA	-6279	NM_001042719	114874	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	0.015000	0.393035	
mm_161992.1	chr19	34601873	34602073	-	1	NA	NA	NA	-5	NM_001101605	667373	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c|OTTMUSG00000016644	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	0.005000	0.422886	
mm_110999.1	chr12	78845190	78845390	-	1	NA	NA	NA	16348	NM_023721	73834	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	0.020000	0.368159	-65(TCTTTTTAAAGG,-,0.00),-64(CTTTTTAAAGGG,+,0.00),-64(CTTTTTAAAGGG,-,0.00)
mm_117604.1	chr13	90089486	90089686	-	1	NA	NA	NA	22	NM_028012	108138	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	0.085000	0.572139	
mm_133108.1	chr16	65473832	65474032	+	1	NA	NA	NA	-46697	NM_008849	18736	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.015000	0.646766	
mm_72770.1	chr8	85824212	85824412	+	1	NA	NA	NA	16637	NM_028007	71927	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	0.025000	0.492537	
mm_140483.1	chr17	3114764	3114964	-	1	NA	NA	NA	-108	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.165000	0.781095	
mm_3090.1	chr1	134408008	134408208	+	1	NA	NA	NA	2118	NM_028057	72017	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	0.015000	0.582090	
mm_122585.1	chr14	50869253	50869453	-	1	NA	NA	NA	1201	NM_009351	21745	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	0.005000	0.388060	
mm_82855.1	chr9	31455328	31455528	-	1	NA	NA	NA	8810	NM_144936	235135	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	0.000000	0.338308	
mm_28586.1	chr3	94377168	94377368	-	1	NA	NA	NA	-164	NM_001293734	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.040000	0.616915	
mm_20360.1	chr2	128294904	128295104	-	1	NA	NA	NA	134347	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.020000	0.537313	-34(CTCTCTAAATAG,-,0.00)
mm_142102.1	chr17	35835451	35835651	-	1	NA	NA	NA	2750	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.055000	0.606965	
mm_13148.1	chr2	92344489	92344689	+	1	NA	NA	NA	26468	NM_001290774	228366	Mm.31158	NM_172670	ENSMUSG00000040434	Large2	5730485C17Rik|AI891893|Gyltl1b|Largel|mKIAA4105	LARGE xylosyl- and glucuronyltransferase 2	protein-coding	0.020000	0.442786	
mm_45057.1	chr5	41819287	41819487	-	1	NA	NA	NA	24928	NM_001310601	665775	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0.015000	0.502488	
mm_126598.1	chr15	82362812	82363012	+	1	NA	NA	NA	-8621	NM_025987	67130	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	0.015000	0.467662	-33(TACTATATAAGC,-,0.00)
mm_127770.1	chr15	3279165	3279365	-	1	NA	NA	NA	8288	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.005000	0.567164	
mm_20789.1	chr2	144009110	144009310	-	1	NA	NA	NA	2053	NM_133626	81910	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.005000	0.517413	
mm_119974.1	chr14	55559924	55560124	+	1	NA	NA	NA	-5	NR_037572	28199	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.080000	0.616915	
mm_52035.1	chr6	96126556	96126756	+	1	NA	NA	NA	13502	NM_182808	320265	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.025000	0.452736	
mm_6463.1	chr1	74030770	74030970	-	1	NA	NA	NA	93577	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.010000	0.537313	-98(CCTTTTAGGGCA,+,0.00)
mm_154205.1	chr19	59075412	59075612	-	1	NA	NA	NA	557	NM_175172	71653	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Kiaa1598|Shootin1|mKIAA1598	shootin 1	protein-coding	0.070000	0.671642	-28(CCTTTTATCCCC,+,0.00)
mm_83258.1	chr9	42428104	42428304	-	1	NA	NA	NA	-28275	NM_001324548	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.025000	0.542289	
mm_89981.1	chr10	111608519	111608719	+	1	NA	NA	NA	-14346	NR_045344	71321	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.010000	0.422886	
mm_163336.1	chr12	12170439	12170639	-	1	NA	NA	NA	-91600	NM_029758	76820	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.000000	0.502488	
mm_131262.1	chr16	10791728	10791928	+	1	NA	NA	NA	277	NM_008933	19119	Mm.325769	NM_008933	ENSMUSG00000038015	Prm2	AI528784|Prm-2	protamine 2	protein-coding	0.050000	0.636816	
mm_62804.1	chr7	112898911	112899111	+	1	NA	NA	NA	-54951	NM_175279	78748	Mm.349943	NM_175279	ENSMUSG00000098132	Rassf10	4632411J06Rik	Ras association (RalGDS/AF-6) domain family (N-terminal) member 10	protein-coding	0.005000	0.368159	9(GCCTTTATACAA,+,0.00)
mm_60377.1	chr7	44467979	44468179	+	1	NA	NA	NA	99	NM_001205070	66124	Mm.358691	NM_025368	ENSMUSG00000038695	Josd2	1110007C05Rik	Josephin domain containing 2	protein-coding	0.120000	0.656716	
mm_20030.1	chr2	119618383	119618583	-	1	NA	NA	NA	22	NM_001042653	70645	Mm.246412	NM_001042653	ENSMUSG00000072980	Oip5	5730547N13Rik|Lint-25|Ms18b	Opa interacting protein 5	protein-coding	0.085000	0.542289	
mm_38795.1	chr4	148149548	148149748	-	1	NA	NA	NA	2277	NM_001163705	50762	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	0.030000	0.582090	
mm_9710.1	chr1	179546144	179546344	-	1	NA	NA	NA	32	NM_001331055	15278	Mm.293529	NM_008249	ENSMUSG00000026492	Tfb2m	Hkp1	transcription factor B2, mitochondrial	protein-coding	0.070000	0.582090	
mm_100042.1	chr11	115091747	115091947	+	1	NA	NA	NA	416	NM_001163753	58222	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.050000	0.656716	
mm_157600.1	chrX	53370354	53370554	-	1	NA	NA	NA	105	NM_027409	70380	Mm.491083	NM_027409	ENSMUSG00000023074	Mospd1	1810018L05Rik	motile sperm domain containing 1	protein-coding	0.035000	0.587065	
mm_35801.1	chr4	46591765	46591965	-	1	NA	NA	NA	10064	NM_001164804	107684	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.000000	0.368159	
mm_148592.1	chr19	5069598	5069798	+	1	NA	NA	NA	1620	NM_054042	70445	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.015000	0.537313	
mm_134451.1	chr16	18407850	18408050	-	1	NA	NA	NA	5544	NM_001111063	12846	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.030000	0.597015	
mm_161703.1	chr17	24364431	24364631	+	1	NA	NA	NA	12508	NM_001039581	27410	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	0.020000	0.552239	
mm_144351.1	chr18	15195299	15195499	+	1	NA	NA	NA	-43953	NM_134112	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.035000	0.487562	
mm_73046.1	chr8	94354900	94355100	+	1	NA	NA	NA	25792	NM_001205311	20497	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.015000	0.512438	-69(GCTTTTAAAATC,+,0.00),-68(CTTTTAAAATCC,+,0.00)
mm_117106.1	chr13	60176456	60176656	-	1	NA	NA	NA	979	NM_008086	14451	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	0.160000	0.761194	
mm_137273.1	chr17	24719855	24720055	+	1	NA	NA	NA	10	NR_027900	73474	Mm.443320	NR_027900	ENSMUSG00000090101	Snhg9	1700072N11Rik	small nucleolar RNA host gene 9	ncRNA	0.125000	0.671642	
mm_100525.1	chr11	120581581	120581781	+	1	NA	NA	NA	-61	NM_133796	192662	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.170000	0.751244	
mm_58376.1	chr6	149100277	149100477	-	1	NA	NA	NA	1303	NM_177192	320560	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|ENSMUSG00000072657|Gm17524	DENN/MADD domain containing 5B	protein-coding	0.015000	0.378109	
mm_122620.1	chr14	51145385	51145585	-	1	NA	NA	NA	1282	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.005000	0.512438	
mm_96477.1	chr11	67655955	67656155	+	1	NA	NA	NA	-39271	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.000000	0.502488	
mm_136635.1	chr17	5713041	5713241	+	1	NA	NA	NA	-85516	NR_045081	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.000000	0.323383	
mm_127906.1	chr15	9524032	9524232	-	1	NA	NA	NA	5744	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.015000	0.398010	-32(TTCCATATAAGG,-,0.00)
mm_122640.1	chr14	51219137	51219337	-	1	NA	NA	NA	15542	NM_017389	503847	Mm.377124	NM_017389	ENSMUSG00000050766	Ear14	-	eosinophil-associated, ribonuclease A family, member 14	protein-coding	0.005000	0.402985	
mm_140617.1	chr17	10840475	10840675	-	1	NA	NA	NA	216	NM_016694	50873	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.120000	0.721393	
mm_56350.1	chr6	92988168	92988368	-	1	NA	NA	NA	47686	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.020000	0.437811	-32(CCTTTAAAACAA,+,0.00)
mm_95966.1	chr11	58917802	58918002	+	1	NA	NA	NA	-155	NM_138678	192194	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	0.020000	0.507463	-5(TCTTATATGCTC,+,0.00)
mm_79521.1	chr9	57560907	57561107	+	1	NA	NA	NA	63	NM_022813	24044	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	0.085000	0.646766	
mm_17961.1	chr2	37422931	37423131	-	1	NA	NA	NA	-128	NM_001290642	319817	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	0.080000	0.646766	
mm_60464.1	chr7	44477770	44477970	+	1	NA	NA	NA	-6647	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.462687	
mm_2771.1	chr1	130731877	130732077	+	1	NA	NA	NA	1	NM_177604	212439	Mm.268547	NM_177604	ENSMUSG00000042510	AA986860	E030025M07|Sarg	expressed sequence AA986860	protein-coding	0.015000	0.577114	
mm_7686.1	chr1	128591075	128591275	-	1	NA	NA	NA	1124	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.090000	0.572139	
mm_116912.1	chr13	55487930	55488130	-	1	NA	NA	NA	46	NM_001177371	56320	Mm.19016	NM_019813	ENSMUSG00000034675	Dbn1	-	drebrin 1	protein-coding	0.140000	0.776119	
mm_172358.1	chr7	11609188	11609388	+	1	NA	NA	NA	61231	NM_145843	252905	Mm.377264	NM_145843	ENSMUSG00000095430	Vmn1r72	V1rg1	vomeronasal 1 receptor 72	protein-coding	0.010000	0.467662	-37(CCCTATAAAAGG,-,0.00)
mm_56366.1	chr6	93913176	93913376	-	1	NA	NA	NA	-313	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.045000	0.577114	
mm_116617.1	chr13	48871662	48871862	-	1	NA	NA	NA	-877	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.020000	0.532338	
mm_335.1	chr1	29841737	29841937	+	1	NA	NA	NA	420349	NR_105760	102465174		NR_105760	ENSMUSG00000099257	Mir6342	Gm27268|mmu-mir-6342	microRNA 6342	ncRNA	0.030000	0.487562	
mm_146070.1	chr18	70472568	70472768	+	1	NA	NA	NA	2	NM_001289650	170461	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	0.055000	0.621891	
mm_100100.1	chr11	115707975	115708175	+	1	NA	NA	NA	522	NM_008163	14784	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.085000	0.696517	
mm_130731.1	chr15	101247106	101247306	-	1	NA	NA	NA	-19640	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.005000	0.497512	
mm_109579.1	chr12	112490647	112490847	+	1	NA	NA	NA	1299	NM_177039	319942	Mm.185209	NM_177039	ENSMUSG00000043122	A530016L24Rik	Nrac	RIKEN cDNA A530016L24 gene	protein-coding	0.005000	0.636816	
mm_131278.1	chr16	11060842	11061042	+	1	NA	NA	NA	-5356	NM_009223	20621	Mm.325800	NM_009223	ENSMUSG00000037972	Snn	2810407J07Rik|AI848521|AW547286	stannin	protein-coding	0.010000	0.512438	-57(GGTCATAAAAGG,-,0.00)
mm_59929.1	chr7	30423318	30423518	+	1	NA	NA	NA	114	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.045000	0.587065	
mm_14453.1	chr2	131186857	131187057	+	1	NA	NA	NA	9	NM_001111075	12531	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	0.060000	0.656716	1(GAATATATAAGG,-,0.00)
mm_4306.1	chr1	171840725	171840925	+	1	NA	NA	NA	1128	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.010000	0.412935	
mm_28709.1	chr3	95651239	95651439	-	1	NA	NA	NA	-7382	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.015000	0.442786	
mm_87621.1	chr10	57794640	57794840	+	1	NA	NA	NA	196	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.075000	0.691542	
mm_144729.1	chr18	35553311	35553511	+	1	NA	NA	NA	1	NR_038073	100503380	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	0.080000	0.676617	
mm_686.1	chr1	40529506	40529706	+	1	NA	NA	NA	14244	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.010000	0.427861	
mm_29572.1	chr3	116968703	116968903	-	1	NA	NA	NA	149	NM_023245	114301	Mm.253736	NM_023245	ENSMUSG00000033377	Palmd	4631423C22Rik|PALML	palmdelphin	protein-coding	0.035000	0.552239	
mm_109480.1	chr12	111428970	111429170	+	1	NA	NA	NA	11625	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.010000	0.522388	-84(GACTCTAAAGGG,-,0.00),64(CCTTATCTGGGC,+,0.00)
mm_92234.1	chr10	69210007	69210207	-	1	NA	NA	NA	1555	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.005000	0.442786	
mm_198.1	chr1	16053200	16053400	+	1	NA	NA	NA	40025	NM_001305227	75799	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	0.010000	0.402985	
mm_47965.1	chr5	135744100	135744300	-	1	NA	NA	NA	-28	NM_172541	215210	Mm.11688	NM_172541	ENSMUSG00000039886	Tmem120a	2010310D06Rik|Tmpit	transmembrane protein 120A	protein-coding	0.135000	0.746269	
mm_47045.1	chr5	116024360	116024560	-	1	NA	NA	NA	-32	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.080000	0.631841	
mm_122997.1	chr14	54992333	54992533	-	1	NA	NA	NA	2116	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.015000	0.577114	
mm_11641.1	chr2	34879344	34879544	+	1	NA	NA	NA	5048	NM_030021	77996	Mm.215255	NM_030021	ENSMUSG00000026870	Cutal	D730039F16Rik	cutA divalent cation tolerance homolog-like	protein-coding	0.010000	0.547264	
mm_108359.1	chr12	80721642	80721842	+	1	NA	NA	NA	29141	NM_001177503	217682	Mm.154541	NM_001177503	ENSMUSG00000066438	Plekhd1	3830431G21Rik	pleckstrin homology domain containing, family D (with coiled-coil domains) member 1	protein-coding	0.020000	0.527363	43(CCTTTTAAAAAG,+,0.00),43(CCTTTTAAAAAG,-,0.00)
mm_119573.1	chr14	50465932	50466132	+	1	NA	NA	NA	-7025	NM_207133	258233	Mm.377278	NM_207133	ENSMUSG00000095765	Olfr741	GA_x5J8B7TYL6J-3-280|GA_x5J8B7U07Q4-325-757|GA_x6K02T2PMLR-6197851-6198786|MOR106-10|MOR106-15	olfactory receptor 741	protein-coding	0.040000	0.507463	
mm_47472.1	chr5	123699968	123700168	-	1	NA	NA	NA	-15707	NM_001347468	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.020000	0.333333	46(GTATATATAAGC,-,0.00),67(CACTTTTTAAAG,-,0.00),69(CTTTTTAAAGAA,+,0.00)
mm_32592.1	chr4	111719990	111720190	+	1	NA	NA	NA	80	NM_026470	67946	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	0.115000	0.776119	
mm_123933.1	chr14	73366618	73366818	-	1	NA	NA	NA	18553	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.010000	0.358209	-7(TTTTTTAAAGAC,+,0.00)
mm_154974.1	chrX	37190342	37190542	+	1	NA	NA	NA	-780	NM_153503	69942	Mm.307182	NM_153503	ENSMUSG00000036537	Rnf113a1	2810428C21Rik|Rnf113a	ring finger protein 113A1	protein-coding	0.010000	0.467662	
mm_13970.1	chr2	121432230	121432430	+	1	NA	NA	NA	10271	NM_145973	269344	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	0.010000	0.348259	
mm_17531.1	chr2	29623468	29623668	-	1	NA	NA	NA	3848	NM_001039086	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.020000	0.557214	
mm_119994.1	chr14	55591739	55591939	+	1	NA	NA	NA	49	NM_194346	268749	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0.090000	0.711443	
mm_168400.1	chr11	29547792	29547992	-	1	NA	NA	NA	-58	NM_028504	73324	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	0.130000	0.661692	
mm_16279.1	chr2	173779120	173779320	+	1	NA	NA	NA	41649	NM_019806	56491	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.005000	0.517413	58(TGCCATAAAAGA,-,0.00)
mm_169953.1	chr16	84834892	84835092	+	1	NA	NA	NA	6	NM_001302216	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.075000	0.592040	
mm_14666.1	chr2	138365527	138365727	+	1	NA	NA	NA	87134	NM_145534	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.010000	0.562189	
mm_64696.1	chr7	4528018	4528218	-	1	NA	NA	NA	4324	NM_001033548	436022	Mm.425359	NM_001033548	ENSMUSG00000055809	Dnaaf3	6030429G01Rik|b2b1739Clo	dynein, axonemal assembly factor 3	protein-coding	0.035000	0.597015	
mm_58416.1	chr7	3290501	3290701	+	1	NA	NA	NA	45	NM_001093765	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.030000	0.601990	
mm_149012.1	chr19	8735736	8735936	+	1	NA	NA	NA	-3	NM_134139	107071	Mm.29627	NM_134139	ENSMUSG00000042729	Wdr74	5730436H21Rik|AA407588	WD repeat domain 74	protein-coding	0.075000	0.601990	
mm_128723.1	chr15	64060148	64060348	-	1	NA	NA	NA	200	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.170000	0.796020	
mm_36245.1	chr4	63386978	63387178	-	1	NA	NA	NA	11162	NM_001305432	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.010000	0.601990	
mm_134590.1	chr16	20426247	20426447	-	1	NA	NA	NA	47	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.095000	0.611940	14(CGCTATAAAGGC,-,0.00)
mm_80571.1	chr9	83938976	83939176	+	1	NA	NA	NA	-9705	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.005000	0.427861	
mm_37850.1	chr4	132211905	132212105	-	1	NA	NA	NA	251	NM_145393	213541	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0.150000	0.726368	
mm_123001.1	chr14	54992740	54992940	-	1	NA	NA	NA	1709	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.025000	0.577114	
mm_39591.1	chr5	23496329	23496529	+	1	NA	NA	NA	62000	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.005000	0.383085	-89(GCATTTATAGGC,+,0.00),-80(GGCTATATAAAC,-,0.00)
mm_160519.1	chr9	24300238	24300438	+	1	NA	NA	NA	202320	NM_175678	319239	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	0.010000	0.417910	
mm_57482.1	chr6	125241570	125241770	-	1	NA	NA	NA	-4643	NM_001286753	21940	Mm.367714	NM_001033126	ENSMUSG00000030336	Cd27	S152|Tnfrsf7|Tp55	CD27 antigen	protein-coding	0.015000	0.497512	
mm_39616.1	chr5	24383454	24383654	+	1	NA	NA	NA	8589	NM_001002897	213948	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0.065000	0.621891	
mm_1878.1	chr1	85649901	85650101	+	1	NA	NA	NA	13	NM_001313714	20684	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.010000	0.532338	
mm_155118.1	chrX	48694925	48695125	+	1	NA	NA	NA	21	NM_173376	209003	Mm.32561	NM_173376	ENSMUSG00000031107	Rbmx2	2700089A17Rik|2810411A03Rik|CGI-79	RNA binding motif protein, X-linked 2	protein-coding	0.110000	0.631841	
mm_7486.1	chr1	121327581	121327781	-	1	NA	NA	NA	-3	NM_001271531	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.065000	0.641791	
mm_126528.1	chr15	81987742	81987942	+	1	NA	NA	NA	7302	NM_025503	66346	Mm.54292	NM_025503	ENSMUSG00000061633	1700029P11Rik	-	RIKEN cDNA 1700029P11 gene	protein-coding	0.000000	0.507463	-98(CCCTTTAAGAGA,-,0.00),-97(CCTTTAAGAGAA,+,0.00)
mm_65301.1	chr7	24671940	24672140	-	1	NA	NA	NA	10	NM_019981	56746	Mm.23385	NM_019981	ENSMUSG00000062773	Tex101	1700008H15Rik|AI429076|TES101RP	testis expressed gene 101	protein-coding	0.055000	0.547264	67(TGGTTTAAAAAG,-,0.00)
mm_48693.1	chr5	146794906	146795106	-	1	NA	NA	NA	-50	NM_011669	22217	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.135000	0.800995	
mm_32219.1	chr4	101656049	101656249	+	1	NA	NA	NA	8366	NM_175036	230514	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0.045000	0.487562	
mm_34933.1	chr4	155839697	155839897	+	1	NA	NA	NA	117	NM_024263	74761	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	0.055000	0.636816	
mm_17049.1	chr2	20968850	20969050	-	1	NA	NA	NA	76	NR_033225	433408	Mm.386941	NR_033225		Gm13375	OTTMUSG00000011664	predicted gene 13375	ncRNA	0.150000	0.796020	
mm_116991.1	chr13	56488016	56488216	-	1	NA	NA	NA	-5870	NM_008373	16198	Mm.3006	NM_008373	ENSMUSG00000021538	Il9	Il-9|P40	interleukin 9	protein-coding	0.015000	0.487562	
mm_98373.1	chr11	94044116	94044316	+	1	NA	NA	NA	11	NM_001025429	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.020000	0.527363	
mm_92941.1	chr10	84794648	84794848	-	1	NA	NA	NA	38700	NM_001024918	71137	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.005000	0.452736	
mm_88274.1	chr10	75036989	75037189	+	1	NA	NA	NA	0	NM_029781	76877	Mm.133593	NM_029781	ENSMUSG00000020175	Rab36	6330593L16Rik|AW047545	RAB36, member RAS oncogene family	protein-coding	0.070000	0.611940	
mm_135460.1	chr16	45742716	45742916	-	1	NA	NA	NA	139	NM_001272070	213012	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	0.080000	0.711443	
mm_16573.1	chr2	3423906	3424106	-	1	NA	NA	NA	-125	NM_146114	227525	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0.025000	0.532338	
mm_125803.1	chr15	74918617	74918817	+	1	NA	NA	NA	-36334	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.020000	0.477612	
mm_3446.1	chr1	150102738	150102938	+	1	NA	NA	NA	2807	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.388060	
mm_124043.1	chr14	77036811	77037011	-	1	NA	NA	NA	139	NM_001310649	108811	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	0.085000	0.671642	
mm_89385.1	chr10	89744905	89745105	+	1	NA	NA	NA	14	NM_029166	75089	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0.115000	0.726368	
mm_71293.1	chr8	41153998	41154198	+	1	NA	NA	NA	-20372	NM_001005863	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.005000	0.457711	
mm_67535.1	chr7	81345203	81345403	-	1	NA	NA	NA	-69	NM_009092	20068	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.095000	0.636816	43(CGCTTTATAGGC,-,0.00)
mm_131519.1	chr16	17581087	17581287	+	1	NA	NA	NA	-4516	NM_144852	224022	Mm.298878	NM_144852	ENSMUSG00000022756	Slc7a4	AI853530	solute carrier family 7 (cationic amino acid transporter, y+ system), member 4	protein-coding	0.010000	0.422886	
mm_62185.1	chr7	97480847	97481047	+	1	NA	NA	NA	-9	NM_027256	101861	Mm.27383	NM_027256	ENSMUSG00000025133	Ints4	2610034N24Rik|AA692684|AW493223	integrator complex subunit 4	protein-coding	0.035000	0.562189	
mm_29666.1	chr3	122619572	122619772	-	1	NA	NA	NA	42	NM_001114665	214459	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	0.105000	0.731343	
mm_118026.1	chr13	100946829	100947029	-	1	NA	NA	NA	-113502	NM_022885	69048	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.040000	0.512438	
mm_54119.1	chr6	18108950	18109150	-	1	NA	NA	NA	11	NM_023729	74068	Mm.73091	NM_023729	ENSMUSG00000010796	Asz1	4933400N19Rik|Gasz|ORF3	ankyrin repeat, SAM and basic leucine zipper domain containing 1	protein-coding	0.065000	0.636816	
mm_76334.1	chr8	84713699	84713899	-	1	NA	NA	NA	12342	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.040000	0.601990	
mm_48500.1	chr5	142815342	142815542	-	1	NA	NA	NA	1945	NM_178242	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.085000	0.606965	
mm_61247.1	chr7	65803899	65804099	+	1	NA	NA	NA	-53	NR_045301	100503969	Mm.383527	NR_045301		1810008I18Rik	-	RIKEN cDNA 1810008I18 gene	ncRNA	0.010000	0.492537	
mm_143351.1	chr17	67120322	67120522	-	1	NA	NA	NA	-94187	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.005000	0.358209	
mm_35886.1	chr4	49541184	49541384	-	1	NA	NA	NA	8262	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.010000	0.507463	
mm_3436.1	chr1	150101945	150102145	+	1	NA	NA	NA	2014	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.437811	
mm_34772.1	chr4	153957161	153957361	+	1	NA	NA	NA	24	NM_001163019	97159	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding	0.140000	0.721393	
mm_50171.1	chr6	41557606	41557806	+	1	NA	NA	NA	35930	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.020000	0.552239	
mm_94791.1	chr11	22859767	22859967	+	1	NA	NA	NA	-132	NM_016888	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.125000	0.711443	
mm_112113.1	chr12	112797552	112797752	-	1	NA	NA	NA	-11323	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.020000	0.592040	
mm_169833.1	chr16	25517484	25517684	+	1	NA	NA	NA	-166181	NM_001127259	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.000000	0.378109	-44(TCTTATAAAGAA,+,0.00)
mm_86048.1	chr9	114512341	114512541	-	1	NA	NA	NA	-15897	NM_009916	12773	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	0.000000	0.343284	
mm_59640.1	chr7	28157745	28157945	+	1	NA	NA	NA	-11903	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.040000	0.621891	
mm_43408.1	chr5	135887881	135888081	+	1	NA	NA	NA	62	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.065000	0.611940	-61(CCATTAATAGAG,+,0.00)
mm_114943.1	chr13	96542514	96542714	+	1	NA	NA	NA	-35	NM_012048	27015	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	0.105000	0.731343	
mm_20431.1	chr2	129306361	129306561	-	1	NA	NA	NA	3511	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.020000	0.402985	
mm_145495.1	chr18	60390372	60390572	+	1	NA	NA	NA	14443	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.010000	0.447761	
mm_162430.1	chr1	93511817	93512017	-	1	NA	NA	NA	-187	NM_145519	227377	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	0.060000	0.641791	
mm_164329.1	chr16	7767775	7767975	+	1	NA	NA	NA	657261	NM_029070	74720	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding	0.005000	0.502488	
mm_19367.1	chr2	91182801	91183001	-	1	NA	NA	NA	146	NM_001177719	228355	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0.155000	0.800995	
mm_169020.1	chr13	112578149	112578349	-	1	NA	NA	NA	2413	NM_139299	218624	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	0.045000	0.522388	
mm_126055.1	chr15	76949463	76949663	+	1	NA	NA	NA	1019	NM_054099	117171	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0.025000	0.492537	
mm_13553.1	chr2	112242511	112242711	+	1	NA	NA	NA	2770	NM_207206	99010	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.035000	0.512438	
mm_72773.1	chr8	86208932	86209132	+	1	NA	NA	NA	357558	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	0.010000	0.462687	-33(GAGTATAAATAG,-,0.00)
mm_15315.1	chr2	155611096	155611296	+	1	NA	NA	NA	-47	NM_001085378	668940	Mm.469980	NM_001085378	ENSMUSG00000074652	Myh7b	Myh14	myosin, heavy chain 7B, cardiac muscle, beta	protein-coding	0.015000	0.552239	
mm_148133.1	chr18	75697536	75697736	-	1	NA	NA	NA	60	NM_201354	269037	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0.045000	0.601990	
mm_161696.1	chr17	23763164	23763364	-	1	NA	NA	NA	8327	NM_153791	224613	Mm.328835	NM_153791	ENSMUSG00000040097	Flywch1	E030034P13Rik|mKIAA1552	FLYWCH-type zinc finger 1	protein-coding	0.005000	0.621891	
mm_131261.1	chr16	10791710	10791910	+	1	NA	NA	NA	295	NM_008933	19119	Mm.325769	NM_008933	ENSMUSG00000038015	Prm2	AI528784|Prm-2	protamine 2	protein-coding	0.055000	0.636816	
mm_165523.1	chr2	174339242	174339442	+	1	NA	NA	NA	9253	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.010000	0.512438	
mm_66670.1	chr7	45725700	45725900	-	1	NA	NA	NA	16	NM_027055	69363	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	0.020000	0.582090	
mm_44905.1	chr5	35654072	35654272	-	1	NA	NA	NA	25608	NM_001042615	78558	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.020000	0.542289	
mm_138122.1	chr17	34145221	34145421	+	1	NA	NA	NA	-95	NM_010388	15000	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0.005000	0.587065	
mm_98286.1	chr11	89065780	89065980	+	1	NA	NA	NA	5129	NR_110336	414094	Mm.124287	NM_001001497		Dgkeos	A930013B10Rik	diacylglycerol kinase, epsilon, opposite strand	ncRNA	0.020000	0.502488	
mm_12556.1	chr2	72445538	72445738	+	1	NA	NA	NA	-30581	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.005000	0.432836	
mm_77933.1	chr9	7354654	7354854	+	1	NA	NA	NA	7380	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.388060	
mm_98695.1	chr11	96303429	96303629	+	1	NA	NA	NA	17	NM_008268	15413	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	0.045000	0.462687	
mm_76747.1	chr8	95423223	95423423	-	1	NA	NA	NA	11546	NM_008187	14894	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.005000	0.412935	
mm_27041.1	chr3	26331839	26332039	-	1	NA	NA	NA	-30	NM_138666	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.060000	0.601990	
mm_168514.1	chr11	5699764	5699964	-	1	NA	NA	NA	7835	NM_026080	64660	Mm.7328	NM_026080	ENSMUSG00000020477	Mrps24	3110030K20Rik|AI414579|Rpms24	mitochondrial ribosomal protein S24	protein-coding	0.020000	0.532338	-34(CCCTTTATAAGC,+,0.00),-34(CCCTTTATAAGC,-,0.00),-32(CTTTATAAGCAC,+,0.00)
mm_45145.1	chr5	49174623	49174823	-	1	NA	NA	NA	110936	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.000000	0.358209	-72(CCCCTTTTAAGC,-,0.00),-70(CCTTTTAAGCCC,+,0.00)
mm_118314.1	chr13	113110547	113110747	-	1	NA	NA	NA	-9666	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.000000	0.393035	
mm_104636.1	chr11	97523133	97523333	-	1	NA	NA	NA	-22893	NM_001289118	100141474	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.045000	0.671642	
mm_94651.1	chr11	17051564	17051764	+	1	NA	NA	NA	-270	NM_029861	380686	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	0.010000	0.507463	
mm_132281.1	chr16	33056423	33056623	+	1	NA	NA	NA	9	NM_021338	57808	Mm.19355	NM_021338	ENSMUSG00000060636	Rpl35a	2810431L15Rik|Rpl35	ribosomal protein L35A	protein-coding	0.090000	0.656716	
mm_26740.1	chr3	6620343	6620543	-	1	NA	NA	NA	0	NM_027048	69347	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	0.015000	0.492537	
mm_95370.1	chr11	49086881	49087081	+	1	NA	NA	NA	-36	NM_001271676	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.010000	0.412935	
mm_116099.1	chr13	28884132	28884332	-	1	NA	NA	NA	1190	NR_045054	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.060000	0.527363	
mm_84308.1	chr9	63666708	63666908	-	1	NA	NA	NA	64153	NM_025857	66939	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.020000	0.547264	
mm_139728.1	chr17	57476706	57476906	+	1	NA	NA	NA	68508	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.000000	0.378109	
mm_72403.1	chr8	81770474	81770674	+	1	NA	NA	NA	428012	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.000000	0.363184	
mm_37988.1	chr4	133631044	133631244	-	1	NA	NA	NA	2285	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.030000	0.572139	
mm_45359.1	chr5	65990070	65990270	-	1	NA	NA	NA	14115	NR_027961	231253	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.015000	0.527363	
mm_46140.1	chr5	93136878	93137078	-	1	NA	NA	NA	43562	NM_001347377	52398	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.010000	0.497512	
mm_65535.1	chr7	25816456	25816656	-	1	NA	NA	NA	-26	NM_028775	74134	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0.055000	0.651741	
mm_71755.1	chr8	65966562	65966762	+	1	NA	NA	NA	348137	NM_175188	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.015000	0.507463	
mm_899.1	chr1	53360293	53360493	+	1	NA	NA	NA	-7641	NM_133728	70396	Mm.285783	NM_133728	ENSMUSG00000026095	Asnsd1	2210409M21Rik	asparagine synthetase domain containing 1	protein-coding	0.010000	0.407960	
mm_147339.1	chr18	42938148	42938348	-	1	NA	NA	NA	-38742	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.000000	0.487562	49(GCCTCTTAAAAC,-,0.00),50(CCTCTTAAAACC,+,0.00)
mm_78310.1	chr9	22678659	22678859	+	1	NA	NA	NA	203044	NM_178415	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.010000	0.432836	
mm_107506.1	chr12	40038000	40038200	+	1	NA	NA	NA	-113	NM_001039515	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.160000	0.756219	
mm_145838.1	chr18	65444807	65445007	+	1	NA	NA	NA	13910	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.005000	0.333333	
mm_138117.1	chr17	34143139	34143339	+	1	NA	NA	NA	-2177	NM_010388	15000	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0.025000	0.547264	
mm_168694.1	chr11	97187887	97188087	-	1	NA	NA	NA	-95	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.115000	0.696517	
mm_82136.1	chr9	123756946	123757146	+	1	NA	NA	NA	-10165	NM_009913	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.005000	0.507463	
mm_90618.1	chr10	128411600	128411800	+	1	NA	NA	NA	84	NM_026259	67588	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	0.090000	0.671642	
mm_25056.1	chr3	98600793	98600993	+	1	NA	NA	NA	-36855	NM_008294	15495	Mm.14309	NM_008294	ENSMUSG00000095143	Hsd3b4	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	protein-coding	0.010000	0.432836	-33(AGGTATAAAAAG,-,0.00)
mm_73563.1	chr8	109565929	109566129	+	1	NA	NA	NA	137	NM_175646	234723	Mm.37667	NM_175646	ENSMUSG00000031723	Txnl4b	AI595343|D530025J19Rik|DLP|Dim2	thioredoxin-like 4B	protein-coding	0.055000	0.492537	
mm_165550.1	chr3	9890759	9890959	-	1	NA	NA	NA	-57180	NM_001195031	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.000000	0.417910	
mm_65094.1	chr7	19271483	19271683	-	1	NA	NA	NA	271	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.090000	0.736318	
mm_12633.1	chr2	74705051	74705251	+	1	NA	NA	NA	-338	NM_001290730	15437	Mm.280673	NM_008276	ENSMUSG00000027102	Hoxd8	4921540P06Rik|AI047735|Hox-4.3|Hox-5.4	homeobox D8	protein-coding	0.100000	0.676617	
mm_25461.1	chr3	108537489	108537689	+	1	NA	NA	NA	5	NM_029314	75504	Mm.271255	NM_029314	ENSMUSG00000027886	1700013F07Rik	-	RIKEN cDNA 1700013F07 gene	protein-coding	0.050000	0.522388	
mm_128786.1	chr15	66803949	66804149	-	1	NA	NA	NA	27780	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.015000	0.522388	
mm_105559.1	chr11	106488220	106488420	-	1	NA	NA	NA	-524	NM_023913	78943	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.045000	0.582090	
mm_145171.1	chr18	46921717	46921917	+	1	NA	NA	NA	2	NM_001033446	381142	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	0.030000	0.542289	
mm_45683.1	chr5	77351192	77351392	-	1	NA	NA	NA	40808	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.035000	0.487562	82(CCATTTAAAAAC,+,0.00)
mm_26054.1	chr3	135825513	135825713	+	1	NA	NA	NA	-44	NM_001135149	67547	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.030000	0.567164	16(ATCTCTAAAGGG,-,0.00)
mm_80671.1	chr9	90164784	90164984	+	1	NA	NA	NA	1906	NM_001311115	108153	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.010000	0.398010	
mm_150515.1	chr19	39031204	39031404	+	1	NA	NA	NA	24285	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.010000	0.358209	
mm_48138.1	chr5	137150189	137150389	-	1	NA	NA	NA	-34082	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.507463	
mm_20020.1	chr2	119325510	119325710	-	1	NA	NA	NA	-174	NM_019454	54485	Mm.143719	NM_019454	ENSMUSG00000027314	Dll4	Delta4	delta-like 4 (Drosophila)	protein-coding	0.060000	0.671642	
mm_29982.1	chr3	135408628	135408828	-	1	NA	NA	NA	14705	NM_025902	67006	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0.000000	0.348259	74(CTTTATATAGTC,+,0.00)
mm_13615.1	chr2	113405099	113405299	+	1	NA	NA	NA	-35865	NM_001285459	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.015000	0.557214	
mm_37939.1	chr4	133056076	133056276	-	1	NA	NA	NA	44670	NM_146155	230793	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.025000	0.592040	-32(CTGTTGAAAAGG,-,0.00)
mm_72876.1	chr8	88696996	88697196	+	1	NA	NA	NA	68	NM_001128171	74256	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	0.125000	0.781095	
mm_101584.1	chr11	34497068	34497268	-	1	NA	NA	NA	182346	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.000000	0.472637	
mm_158844.1	chrX	169779515	169779715	-	1	NA	NA	NA	20	NR_003635	66747	Mm.34441	NM_025743	ENSMUSG00000055357	4933400A11Rik	-	capping protein (actin filament) muscle Z-line, alpha 1 pseudogene	pseudo	0.010000	0.447761	
mm_148616.1	chr19	5388762	5388962	+	1	NA	NA	NA	-159	NM_016882	20227	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	0.070000	0.592040	
mm_21607.1	chr2	164254514	164254714	-	1	NA	NA	NA	2029	NM_173377	329557	Mm.118769	NM_173377	ENSMUSG00000050383	Svs3b	9530004A22Rik	seminal vesicle secretory protein 3B	protein-coding	0.005000	0.393035	33(TGCTTTAAAAAA,-,0.00)
mm_100526.1	chr11	120598386	120598586	+	1	NA	NA	NA	-46	NM_001038230	66156	Mm.21645	NM_025389	ENSMUSG00000025135	Anapc11	1110011I19Rik|R75218	anaphase promoting complex subunit 11	protein-coding	0.190000	0.736318	
mm_44064.1	chr5	148399901	148400101	+	1	NA	NA	NA	-97	NM_007513	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.105000	0.716418	
mm_154703.1	chrX	8272125	8272325	+	1	NA	NA	NA	844	NM_172479	209837	Mm.6055	NM_172479	ENSMUSG00000031170	Slc38a5	C81234|E330031E14|JM24|SN2	solute carrier family 38, member 5	protein-coding	0.025000	0.567164	
mm_27552.1	chr3	58163709	58163909	-	1	NA	NA	NA	-2	NR_040538	67850	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	0.025000	0.417910	-33(GGGTTTAAAGGC,-,0.00)
mm_114477.1	chr13	68597349	68597549	+	1	NA	NA	NA	10	NM_027035	69315	Mm.272795	NM_027035	ENSMUSG00000021534	1700001L19Rik	-	RIKEN cDNA 1700001L19 gene	protein-coding	0.045000	0.572139	
mm_132770.1	chr16	44765809	44766009	+	1	NA	NA	NA	173	NM_021325	57781	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.060000	0.572139	
mm_45045.1	chr5	41707323	41707523	-	1	NA	NA	NA	268	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.045000	0.577114	-73(GGACTTTAAAGC,-,0.00)
mm_100461.1	chr11	119856163	119856363	+	1	NA	NA	NA	-21898	NR_045312	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	0.020000	0.512438	
mm_79483.1	chr9	56994997	56995197	+	1	NA	NA	NA	129	NM_019651	56294	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	0.150000	0.776119	
mm_149768.1	chr19	23061357	23061557	+	1	NA	NA	NA	-79769	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.010000	0.477612	
mm_22664.1	chr3	14871926	14872126	+	1	NA	NA	NA	8488	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.020000	0.412935	
mm_118492.1	chr14	12867429	12867629	+	1	NA	NA	NA	-44450	NM_012061	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	0.015000	0.447761	
mm_106094.1	chr11	116198575	116198775	-	1	NA	NA	NA	-180	NM_027107	69535	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	0.080000	0.616915	
mm_129475.1	chr15	78718386	78718586	-	1	NA	NA	NA	-373	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0.125000	0.721393	
mm_30499.1	chr3	157906187	157906387	-	1	NA	NA	NA	18776	NM_145953	107869	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	0.015000	0.527363	
mm_95183.1	chr11	42420340	42420540	+	1	NA	NA	NA	683	NM_008070	14401	Mm.338723	NM_008070	ENSMUSG00000007653	Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding	0.030000	0.577114	-33(TGCTATAAATAG,-,0.00)
mm_76249.1	chr8	83607850	83608050	-	1	NA	NA	NA	-225	NM_018808	81489	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.070000	0.616915	
mm_66238.1	chr7	35528540	35528740	-	1	NA	NA	NA	9104	NM_028034	71981	Mm.47904	NM_028034	ENSMUSG00000030491	Tdrd12	2410004F06Rik|2410070K17Rik|ECAT8|EG434165|G1-476-14|repro23	tudor domain containing 12	protein-coding	0.040000	0.502488	-33(TTCTATATAAAC,-,0.00)
mm_104032.1	chr11	86257440	86257640	-	1	NA	NA	NA	28	NM_027421	70422	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0.065000	0.587065	
mm_92108.1	chr10	63023794	63023994	-	1	NA	NA	NA	-45	NM_001079824	432467	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	0.100000	0.716418	
mm_68539.1	chr7	113564879	113565079	-	1	NA	NA	NA	8	NR_126544	69295	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0.010000	0.402985	
mm_31262.1	chr4	45203787	45203987	+	1	NA	NA	NA	18981	NM_001081172	666060	Mm.24783	NM_001081172	ENSMUSG00000035615	Frmpd1	BC031840|mKIAA0967	FERM and PDZ domain containing 1	protein-coding	0.010000	0.542289	
mm_102027.1	chr11	51650939	51651139	-	1	NA	NA	NA	34	NM_145974	212706	Mm.41760	NM_145974	ENSMUSG00000001053	N4bp3	C330016O10Rik	NEDD4 binding protein 3	protein-coding	0.125000	0.731343	
mm_6957.1	chr1	85991387	85991587	-	1	NA	NA	NA	-30432	NM_001033290	227326	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0.025000	0.527363	
mm_98515.1	chr11	94952387	94952587	+	1	NA	NA	NA	-15106	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.020000	0.527363	
mm_122149.1	chr14	31240280	31240480	-	1	NA	NA	NA	10838	NM_027949	71838	Mm.5348	NM_027949	ENSMUSG00000021902	Phf7	1700006H01Rik|1700010P14Rik|AI427892|AW555949	PHD finger protein 7	protein-coding	0.020000	0.457711	
mm_166763.1	chr6	132314654	132314854	-	1	NA	NA	NA	-11	NM_001024705	381832	Mm.441627	NM_001024705	ENSMUSG00000107874	Prpmp5	MP5	proline-rich protein MP5	protein-coding	0.000000	0.482587	-35(TTCCTTATAAAG,-,0.00),-33(CCTTATAAAGAC,+,0.00)
mm_88244.1	chr10	72654797	72654997	+	1	NA	NA	NA	51	NM_001293683	52696	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	0.085000	0.542289	-69(TCATTTAAAGTC,+,0.00)
mm_103583.1	chr11	78178460	78178660	-	1	NA	NA	NA	-98	NM_001291236	68385	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	0.155000	0.786070	
mm_2222.1	chr1	90252624	90252824	+	1	NA	NA	NA	48744	NM_007722	12778	Mm.6522	NM_007722	ENSMUSG00000044337	Ackr3	AW541270|CXC-R7|CXCR-7|Cmkor1|Cxcr7|RDC-1|Rdc1	atypical chemokine receptor 3	protein-coding	0.015000	0.527363	
mm_39544.1	chr5	21543503	21543703	+	1	NA	NA	NA	76	NM_028977	74511	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0.025000	0.547264	
mm_27370.1	chr3	50438737	50438937	-	1	NA	NA	NA	4776	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.015000	0.407960	
mm_14276.1	chr2	128761716	128761916	+	1	NA	NA	NA	-56487	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.005000	0.432836	
mm_112343.1	chr12	116405103	116405303	-	1	NA	NA	NA	-42	NR_028421	319545	Mm.390543	NR_028421		D430020J02Rik	-	RIKEN cDNA D430020J02 gene	ncRNA	0.075000	0.666667	
mm_81758.1	chr9	113969144	113969344	+	1	NA	NA	NA	24556	NR_039590	100628597		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	0.020000	0.487562	
mm_27502.1	chr3	55403101	55403301	-	1	NA	NA	NA	-58557	NM_001195539	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.005000	0.422886	
mm_104891.1	chr11	99580621	99580821	-	1	NA	NA	NA	295	NM_027157	69664	Mm.38303	NM_027157	ENSMUSG00000047253	Krtap1-5	2310043L02Rik|AI592983	keratin associated protein 1-5	protein-coding	0.035000	0.661692	
mm_57268.1	chr6	123287292	123287492	-	1	NA	NA	NA	2479	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.457711	32(CCTCTTATGGCA,+,0.00)
mm_111184.1	chr12	83984753	83984953	-	1	NA	NA	NA	-3008	NM_134188	171210	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	0.010000	0.477612	
mm_8165.1	chr1	136953503	136953703	-	1	NA	NA	NA	27	NM_001159769	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	0.015000	0.442786	
mm_129714.1	chr15	81865528	81865728	-	1	NA	NA	NA	6264	NM_026737	68479	Mm.271715	NM_026737	ENSMUSG00000061360	Phf5a	1110007B08Rik	PHD finger protein 5A	protein-coding	0.015000	0.517413	
mm_115910.1	chr13	23462694	23462894	-	1	NA	NA	NA	3107	NM_013483	12231	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0.000000	0.363184	
mm_22048.1	chr2	168231027	168231227	-	1	NA	NA	NA	505	NM_001160330	69372	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	0.180000	0.746269	
mm_106157.1	chr11	116624168	116624368	-	1	NA	NA	NA	-16	NM_001167680	217344	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.105000	0.741294	
mm_150948.1	chr19	46310210	46310410	+	1	NA	NA	NA	4380	NM_001177370	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.010000	0.582090	
mm_137894.1	chr17	31681197	31681397	+	1	NA	NA	NA	3366	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.010000	0.592040	
mm_91272.1	chr10	24588683	24588883	-	1	NA	NA	NA	-6659	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.005000	0.437811	
mm_106691.1	chr12	3365225	3365425	+	1	NA	NA	NA	193	NM_008445	16570	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.115000	0.711443	
mm_120716.1	chr14	72788551	72788751	+	1	NA	NA	NA	-78648	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.010000	0.492537	
mm_26224.1	chr3	138903004	138903204	+	1	NA	NA	NA	160896	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.010000	0.457711	
mm_95225.1	chr11	44470493	44470693	+	1	NA	NA	NA	-45	NM_024475	79560	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	0.085000	0.631841	
mm_89239.1	chr10	87830849	87831049	+	1	NA	NA	NA	-27316	NM_001314010	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.005000	0.482587	
mm_21462.1	chr2	160874311	160874511	-	1	NA	NA	NA	-1421	NM_177263	320799	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	0.005000	0.447761	
mm_43126.1	chr5	125249529	125249729	+	1	NA	NA	NA	-70415	NM_001253904	20602	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.015000	0.472637	
mm_68925.1	chr7	126472326	126472526	-	1	NA	NA	NA	668	NR_110346	20399	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	0.035000	0.597015	
mm_33357.1	chr4	129473976	129474176	+	1	NA	NA	NA	12397	NM_133889	100383	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	0.025000	0.616915	
mm_95999.1	chr11	59228295	59228495	+	1	NA	NA	NA	-128	NM_007476	11840	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	0.120000	0.671642	
mm_64999.1	chr7	17018523	17018723	-	1	NA	NA	NA	9291	NM_011155	19060	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	0.005000	0.427861	53(CTCTAGAAAAGG,-,0.00)
mm_10117.1	chr2	3727080	3727280	+	1	NA	NA	NA	13722	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.000000	0.373134	-86(CTTTTTAAATGG,+,0.00)
mm_74562.1	chr8	11006618	11006818	-	1	NA	NA	NA	-1132	NR_046017	619321	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0.020000	0.577114	
mm_129442.1	chr15	78529527	78529727	-	1	NA	NA	NA	24	NM_001204153	72709	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	0.040000	0.661692	
mm_140254.1	chr17	84313745	84313945	+	1	NA	NA	NA	-125898	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.010000	0.507463	
mm_165574.1	chr3	22073227	22073427	+	1	NA	NA	NA	-3325	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.005000	0.457711	
mm_144937.1	chr18	37742013	37742213	+	1	NA	NA	NA	19	NM_033578	93703	Mm.247203	NM_033578	ENSMUSG00000103088	Pcdhgb6	-	protocadherin gamma subfamily B, 6	protein-coding	0.050000	0.567164	
mm_25121.1	chr3	102012313	102012513	+	1	NA	NA	NA	2268	NM_178777	18072	Mm.137286	NM_178777	ENSMUSG00000048540	Nhlh2	6230401I09Rik|Hen2|NSCL2|Nscl-2|bHLHa34	nescient helix loop helix 2	protein-coding	0.040000	0.616915	
mm_28953.1	chr3	100487858	100488058	-	1	NA	NA	NA	1234	NM_001142952	74645	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.015000	0.427861	
mm_159496.1	chr4	43267017	43267217	+	1	NA	NA	NA	-42	NM_177195	320571	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	0.060000	0.582090	
mm_146797.1	chr18	20673633	20673833	-	1	NA	NA	NA	8483	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.030000	0.537313	-87(GTTTATAGAGCA,+,0.00)
mm_47300.1	chr5	122354099	122354299	-	1	NA	NA	NA	-4	NM_144912	231724	Mm.255587	NM_144912	ENSMUSG00000038569	Rad9b	A630082N15Rik|BC021784	RAD9 checkpoint clamp component B	protein-coding	0.090000	0.641791	
mm_107698.1	chr12	55410184	55410384	+	1	NA	NA	NA	11459	NM_011968	26443	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.020000	0.402985	
mm_60949.1	chr7	47021195	47021395	+	1	NA	NA	NA	-12881	NM_175318	101685	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.025000	0.507463	
mm_120741.1	chr14	73178175	73178375	+	1	NA	NA	NA	28576	NR_030459	751541		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.025000	0.502488	
mm_152321.1	chr19	9931152	9931352	-	1	NA	NA	NA	-31719	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.005000	0.547264	
mm_47834.1	chr5	134312447	134312647	-	1	NA	NA	NA	2213	NM_001080746	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.015000	0.412935	
mm_114291.1	chr13	58807729	58807929	+	1	NA	NA	NA	132	NM_001025074	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.095000	0.621891	
mm_87902.1	chr10	62072122	62072322	+	1	NA	NA	NA	38791	NM_027251	69894	Mm.294126	NM_027251	ENSMUSG00000020083	2010107G23Rik	AA545165	RIKEN cDNA 2010107G23 gene	protein-coding	0.040000	0.547264	
mm_168418.1	chr11	3265696	3265896	+	1	NA	NA	NA	590	NM_007879	13494	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	0.045000	0.477612	-36(GACTTTAAAAAG,-,0.00),-34(CTTTAAAAAGCC,+,0.00)
mm_35282.1	chr4	20778764	20778964	-	1	NA	NA	NA	-196	NM_172987	269513	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding	0.015000	0.517413	
mm_140623.1	chr17	12276290	12276490	-	1	NA	NA	NA	42270	NM_011948	26407	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.000000	0.353234	79(CCCTTAATAGTT,+,0.00)
mm_157660.1	chrX	57392880	57393080	-	1	NA	NA	NA	56	NM_011252	19655	Mm.28275	NM_011252	ENSMUSG00000031134	Rbmx	hnRNP G	RNA binding motif protein, X chromosome	protein-coding	0.085000	0.547264	
mm_138799.1	chr17	37995773	37995973	+	1	NA	NA	NA	-42851	NM_001011829	258094	Mm.377348	NM_001011829	ENSMUSG00000109376	Olfr761	MOR218-12|MOR218-5P|MOR218-6P|Olfr1552-ps1	olfactory receptor 761	protein-coding	0.015000	0.512438	
mm_140208.1	chr17	83775533	83775733	+	1	NA	NA	NA	69470	NM_001171052	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.040000	0.592040	
mm_93536.1	chr10	115384231	115384431	-	1	NA	NA	NA	104	NM_025780	66816	Mm.32314	NM_025780	ENSMUSG00000020137	Thap2	2900040O07Rik|9030625G08Rik|AI450385|AI649097	THAP domain containing, apoptosis associated protein 2	protein-coding	0.115000	0.676617	
mm_67977.1	chr7	100656872	100657072	-	1	NA	NA	NA	-7	NM_001163186	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.010000	0.616915	
mm_161620.1	chr16	58460145	58460345	+	1	NA	NA	NA	51710	NM_028523	73379	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.000000	0.477612	-34(CACTATAAGAGG,-,0.00)
mm_50414.1	chr6	48746100	48746300	+	1	NA	NA	NA	3	NM_175035	317757	Mm.455917	NM_175035	ENSMUSG00000043505	Gimap5	D630024P16|E230026N22Rik	GTPase, IMAP family member 5	protein-coding	0.020000	0.527363	
mm_111251.1	chr12	84881344	84881544	-	1	NA	NA	NA	-4949	NM_013589	16997	Mm.3900	NM_013589	ENSMUSG00000002020	Ltbp2	AW208642	latent transforming growth factor beta binding protein 2	protein-coding	0.010000	0.517413	
mm_65792.1	chr7	28894253	28894453	-	1	NA	NA	NA	12697	NM_001110807	60594	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	0.030000	0.601990	
mm_139171.1	chr17	47587169	47587369	+	1	NA	NA	NA	-6198	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.437811	
mm_165817.1	chr3	146404860	146405060	+	1	NA	NA	NA	318	NM_138744	99167	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	0.145000	0.746269	
mm_169064.1	chr13	26492433	26492633	+	1	NA	NA	NA	-180127	NR_045933	73576	Mm.45473	NR_045933		1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	0.060000	0.512438	
mm_153404.1	chr19	40511984	40512184	-	1	NA	NA	NA	1652	NM_178362	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.005000	0.562189	
mm_134130.1	chr16	10447255	10447455	-	1	NA	NA	NA	-5	NM_001013778	383103	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0.040000	0.616915	
mm_94652.1	chr11	17051700	17051900	+	1	NA	NA	NA	-134	NM_029861	380686	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	0.035000	0.567164	
mm_129667.1	chr15	81302140	81302340	-	1	NA	NA	NA	-50378	NR_077230	78102	Mm.296832	NR_077229		8430426J06Rik	-	RIKEN cDNA 8430426J06 gene	ncRNA	0.020000	0.412935	
mm_8907.1	chr1	163312520	163312720	-	1	NA	NA	NA	1030	NM_011127	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.080000	0.651741	
mm_52834.1	chr6	121365832	121366032	+	1	NA	NA	NA	19235	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.010000	0.507463	
mm_161255.1	chr13	107733780	107733980	-	1	NA	NA	NA	27207	NR_029759	723929		NR_029759	ENSMUSG00000065425	Mir325	Mirn325|mmu-mir-325	microRNA 325	ncRNA	0.030000	0.452736	
mm_168605.1	chr11	75348231	75348431	-	1	NA	NA	NA	52	NM_001164223	68275	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0.115000	0.696517	
mm_110087.1	chr12	24831212	24831412	-	1	NA	NA	NA	-287	NM_026037	67216	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	0.105000	0.711443	
mm_67526.1	chr7	81161650	81161850	-	1	NA	NA	NA	46951	NM_001004184	434203	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	0.040000	0.482587	
mm_2540.1	chr1	107511324	107511524	+	1	NA	NA	NA	1	NM_001174170	18788	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0.015000	0.417910	-33(TCTTATAAAACC,+,0.00)
mm_66803.1	chr7	47184959	47185159	-	1	NA	NA	NA	4357	NM_001308537	381886	Mm.377894	NM_205821		Mrgpra6	MrgA6	MAS-related GPR, member A6	protein-coding	0.005000	0.388060	-43(CCCCATAAAAAA,-,0.00)
mm_45275.1	chr5	64806171	64806371	-	1	NA	NA	NA	2748	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.015000	0.502488	
mm_52450.1	chr6	113672935	113673135	+	1	NA	NA	NA	-24015	NM_001347356	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.020000	0.621891	
mm_105221.1	chr11	102218829	102219029	-	1	NA	NA	NA	11221	NR_106179	102465892		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0.030000	0.646766	-63(CTATTTATAGAC,+,0.00)
mm_134411.1	chr16	17691529	17691729	-	1	NA	NA	NA	31271	NM_001285886	94112	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.010000	0.378109	
mm_92830.1	chr10	81482243	81482443	-	1	NA	NA	NA	366	NM_176954	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.035000	0.636816	
mm_63684.1	chr7	130552946	130553146	+	1	NA	NA	NA	-5665	NM_001162855	67872	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0.015000	0.497512	
mm_118164.1	chr13	105294300	105294500	-	1	NA	NA	NA	-1386	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.150000	0.756219	
mm_130403.1	chr15	97976064	97976264	-	1	NA	NA	NA	11935	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.030000	0.527363	
mm_95092.1	chr11	33940171	33940371	+	1	NA	NA	NA	-22742	NM_031169	16533	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	0.015000	0.502488	87(GACTCTTAGAGG,-,0.00)
mm_156080.1	chrX	109196726	109196926	+	1	NA	NA	NA	70	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.020000	0.378109	
mm_73569.1	chr8	109693352	109693552	+	1	NA	NA	NA	-158	NM_028018	71955	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0.080000	0.621891	
mm_35922.1	chr4	53031701	53031901	-	1	NA	NA	NA	19921	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.005000	0.318408	
mm_137976.1	chr17	33577808	33578008	+	1	NA	NA	NA	22201	NM_053214	17916	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0.000000	0.407960	
mm_166472.1	chr5	142907874	142908074	-	1	NA	NA	NA	-1220	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.010000	0.502488	-74(GTCCATATATGG,-,0.00)
mm_6498.1	chr1	74284257	74284457	-	1	NA	NA	NA	381	NM_146110	227290	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	0.020000	0.641791	
mm_121971.1	chr14	25593837	25594037	-	1	NA	NA	NA	7133	NR_033492	77592	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0.020000	0.482587	
mm_22524.1	chr3	7646847	7647047	+	1	NA	NA	NA	-33187	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.000000	0.293532	-44(CTCTATTAAAAG,-,0.00),70(GACTTTAAATGG,-,0.00)
mm_10349.1	chr2	11689750	11689950	+	1	NA	NA	NA	-15443	NM_001271498	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.015000	0.467662	
mm_172321.1	chr7	106440976	106441176	-	1	NA	NA	NA	-3	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.005000	0.512438	
mm_6107.1	chr1	64033755	64033955	-	1	NA	NA	NA	8646	NR_105864	102466760		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.030000	0.482587	-79(GGGTATTAAGGC,-,0.00)
mm_137667.1	chr17	28745922	28746122	+	1	NA	NA	NA	-23295	NM_011950	26415	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.010000	0.517413	-100(TTTTTTATAGCT,+,0.00)
mm_43485.1	chr5	136908131	136908331	+	1	NA	NA	NA	81	NM_026073	67286	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	0.075000	0.616915	
mm_162374.1	chr1	69685666	69685866	-	1	NA	NA	NA	194	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.015000	0.447761	
mm_89026.1	chr10	82697258	82697458	+	1	NA	NA	NA	-1649	NM_001081218	67933	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838	host cell factor C2	protein-coding	0.005000	0.437811	
mm_162846.1	chr10	86347150	86347350	+	1	NA	NA	NA	46838	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.010000	0.542289	
mm_28114.1	chr3	86551210	86551410	-	1	NA	NA	NA	-3027	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.020000	0.427861	
mm_3133.1	chr1	135108861	135109061	+	1	NA	NA	NA	-3685	NM_001033409	329252	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0.015000	0.562189	-34(GGGTCTTAAGGC,-,0.00)
mm_158616.1	chrX	152644379	152644579	-	1	NA	NA	NA	69	NM_001290686	110380	Mm.40796	NM_172441	ENSMUSG00000045180	Shroom2	4832440C16|Apxl|C630003H05Rik|Shrm2	shroom family member 2	protein-coding	0.015000	0.527363	
mm_69223.1	chr7	127604333	127604533	-	1	NA	NA	NA	12	NR_027915	68232	Mm.347960	NM_026628	ENSMUSG00000099579	1700120K04Rik	-	RIKEN cDNA 1700120K04 gene	ncRNA	0.025000	0.567164	
mm_52951.1	chr6	122990258	122990458	+	1	NA	NA	NA	-9	NM_001005860	474145	Mm.263483	NM_001005860	ENSMUSG00000059639	Clec4a4	Dcir2	C-type lectin domain family 4, member a4	protein-coding	0.010000	0.427861	
mm_1701.1	chr1	75168544	75168744	+	1	NA	NA	NA	-2	NM_001159905	68818	Mm.32646	NM_026846	ENSMUSG00000026197	Zfand2b	1110060O18Rik|C81256	zinc finger, AN1 type domain 2B	protein-coding	0.095000	0.676617	
mm_158314.1	chrX	127736448	127736648	-	1	NA	NA	NA	6	NM_001281537	73934	Mm.159093	NM_001281537	ENSMUSG00000043569	Cldn34c4	4930412D23Rik	claudin 34C4	protein-coding	0.000000	0.492537	
mm_102970.1	chr11	69667140	69667340	-	1	NA	NA	NA	-1070	NR_110993	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.020000	0.457711	
mm_160160.1	chr7	44257066	44257266	-	1	NA	NA	NA	38	NM_001195034	100503991	Mm.367353	NM_001195034	ENSMUSG00000012777	Acpt	EG546967|Gm1432	acid phosphatase, testicular	protein-coding	0.045000	0.646766	
mm_92820.1	chr10	81460944	81461144	-	1	NA	NA	NA	12087	NM_001311127	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.025000	0.542289	
mm_57451.1	chr6	125163998	125164198	-	1	NA	NA	NA	1675	NM_008084	14433	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0.040000	0.542289	
mm_83256.1	chr9	42428058	42428258	-	1	NA	NA	NA	-28229	NM_001324548	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.020000	0.547264	
mm_98288.1	chr11	89065937	89066137	+	1	NA	NA	NA	5286	NR_110336	414094	Mm.124287	NM_001001497		Dgkeos	A930013B10Rik	diacylglycerol kinase, epsilon, opposite strand	ncRNA	0.015000	0.482587	
mm_95912.1	chr11	58206872	58207072	+	1	NA	NA	NA	7416	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.010000	0.557214	
mm_42886.1	chr5	122372460	122372660	+	1	NA	NA	NA	52	NM_024216	68080	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	0.105000	0.626866	
mm_116507.1	chr13	45079087	45079287	-	1	NA	NA	NA	-77091	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.040000	0.537313	
mm_134148.1	chr16	10784946	10785146	-	1	NA	NA	NA	490	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.100000	0.706468	
mm_2849.1	chr1	131661861	131662061	+	1	NA	NA	NA	23647	NM_007799	13034	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	0.005000	0.606965	
mm_68864.1	chr7	126414775	126414975	-	1	NA	NA	NA	-5	NM_009844	12478	Mm.4360	NM_009844	ENSMUSG00000030724	Cd19	AW495831	CD19 antigen	protein-coding	0.025000	0.616915	
mm_139291.1	chr17	48300376	48300576	+	1	NA	NA	NA	438	NM_001033405	328833	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0.020000	0.601990	
mm_167640.1	chr9	64704746	64704946	+	1	NA	NA	NA	32910	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.000000	0.422886	
mm_149752.1	chr19	22692522	22692722	+	1	NA	NA	NA	3	NM_001035244	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.005000	0.477612	
mm_22996.1	chr3	34019979	34020179	+	1	NA	NA	NA	0	NM_001113189	14359	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0.115000	0.716418	
mm_63508.1	chr7	127841819	127842019	+	1	NA	NA	NA	111	NM_009294	20909	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.030000	0.572139	
mm_21553.1	chr2	164077760	164077960	-	1	NA	NA	NA	3682	NM_021420	58231	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.015000	0.383085	
mm_69308.1	chr7	128412165	128412365	-	1	NA	NA	NA	5907	NM_026418	67865	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.020000	0.532338	
mm_113842.1	chr13	47193913	47194113	+	1	NA	NA	NA	10	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.045000	0.631841	
mm_81486.1	chr9	109999688	109999888	+	1	NA	NA	NA	-52233	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.000000	0.368159	
mm_118696.1	chr14	22140239	22140439	+	1	NA	NA	NA	120627	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.010000	0.527363	
mm_17601.1	chr2	30828110	30828310	-	1	NA	NA	NA	90	NM_133346	72323	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	0.085000	0.641791	
mm_134425.1	chr16	17911229	17911429	-	1	NA	NA	NA	19	NM_022408	27886	Mm.256480	NM_022408	ENSMUSG00000003527	Dgcr14	AI462402|D16H22S1269E|Dgcr1|Dgsi|ES2|Es2el	DiGeorge syndrome critical region gene 14	protein-coding	0.105000	0.621891	
mm_53575.1	chr6	137410659	137410859	+	1	NA	NA	NA	38	NM_001164403	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.010000	0.437811	-96(CTATTAATAGTC,+,0.00)
mm_10194.1	chr2	4922738	4922938	+	1	NA	NA	NA	3842	NM_010726	16922	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.000000	0.457711	
mm_123801.1	chr14	70520161	70520361	-	1	NA	NA	NA	-1	NR_033241	12153	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.100000	0.736318	-32(TTCCCTAAAAGG,-,0.00),-30(CCCTAAAAGGGG,+,0.00)
mm_154851.1	chrX	20548129	20548329	+	1	NA	NA	NA	-1589	NM_009060	19733	Mm.2118	NM_009060	ENSMUSG00000023070	Rgn	AI265316|GNL|SMP30	regucalcin	protein-coding	0.040000	0.572139	
mm_48877.1	chr5	151127384	151127584	-	1	NA	NA	NA	62709	NM_001163493	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.015000	0.517413	
mm_63591.1	chr7	128134757	128134957	+	1	NA	NA	NA	5289	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.010000	0.492537	
mm_146365.1	chr18	82584408	82584608	+	1	NA	NA	NA	30000	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.035000	0.577114	80(CCCCCTAAAGAG,-,0.00)
mm_80675.1	chr9	90245347	90245547	+	1	NA	NA	NA	25322	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.020000	0.502488	
mm_87160.1	chr10	36640985	36641185	+	1	NA	NA	NA	134278	NM_001253356	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0.005000	0.393035	
mm_156851.1	chrX	164400986	164401186	+	1	NA	NA	NA	-18701	NM_011081	18700	Mm.3781	NM_011081	ENSMUSG00000031381	Piga	AI194334|Pig-a	phosphatidylinositol glycan anchor biosynthesis, class A	protein-coding	0.010000	0.373134	72(GCATTTAAACAG,+,0.00)
mm_21233.1	chr2	156052888	156053088	-	1	NA	NA	NA	-41	NM_001136556	74562	Mm.159241	NM_001136556	ENSMUSG00000013338	Fer1l4	9130402C12Rik	fer-1-like 4 (C. elegans)	protein-coding	0.020000	0.606965	
mm_13090.1	chr2	91237028	91237228	+	1	NA	NA	NA	-18	NR_015464	606735	Mm.246808	NR_015464	ENSMUSG00000097868	A330069E16Rik	-	RIKEN cDNA A330069E16 gene	ncRNA	0.060000	0.646766	
mm_156331.1	chrX	138985397	138985597	+	1	NA	NA	NA	71067	NM_013724	27206	Mm.482319	NM_013724	ENSMUSG00000052854	Nrk	AA407323|AA409510|AI225895|AV168563|AW538185|Nesk	Nik related kinase	protein-coding	0.015000	0.447761	70(GCTTATAAACTC,+,0.00)
mm_163844.1	chr14	19417947	19418147	-	1	NA	NA	NA	184540	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.015000	0.358209	
mm_91083.1	chr10	19014442	19014642	-	1	NA	NA	NA	868	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.030000	0.557214	
mm_11777.1	chr2	38931923	38932123	+	1	NA	NA	NA	43	NM_172854	241327	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	0.065000	0.681592	
mm_106929.1	chr12	8500166	8500366	+	1	NA	NA	NA	-281	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.095000	0.696517	
mm_110163.1	chr12	27160362	27160562	-	1	NA	NA	NA	54	NR_045868	636791	Mm.423496	NM_001039248	ENSMUSG00000094002	Gm9866	EG636791|ENSMUSG00000052076	predicted gene 9866	ncRNA	0.020000	0.537313	
mm_14938.1	chr2	151543883	151544083	+	1	NA	NA	NA	1500	NM_001302078	14225	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.015000	0.492537	67(ACCTTTAAAAAG,-,0.00),68(CCTTTAAAAAGC,+,0.00),69(CTTTAAAAAGCT,+,0.00)
mm_111531.1	chr12	100636483	100636683	-	1	NA	NA	NA	88537	NM_001330702	73086	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0.010000	0.353234	
mm_29259.1	chr3	107221630	107221830	-	1	NA	NA	NA	2	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.030000	0.557214	-36(CGCTCTATAAAG,-,0.00),-34(CTCTATAAAGGC,+,0.00),-34(CTCTATAAAGGC,-,0.00)
mm_145398.1	chr18	57142748	57142948	+	1	NA	NA	NA	9758	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.005000	0.472637	
mm_167171.1	chr7	139070417	139070617	+	1	NA	NA	NA	-15484	NM_011993	26757	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	0.005000	0.512438	
mm_74479.1	chr8	4289524	4289724	-	1	NA	NA	NA	-13719	NM_011592	21856	Mm.195249	NM_011592	ENSMUSG00000002949	Timm44	0710005E20Rik|D8Ertd118e|Mimt44|Tim44	translocase of inner mitochondrial membrane 44	protein-coding	0.020000	0.373134	
mm_99964.1	chr11	113684397	113684597	+	1	NA	NA	NA	85	NM_177777	276852	Mm.239566	NM_177777	ENSMUSG00000041623	D11Wsu47e	-	DNA segment, Chr 11, Wayne State University 47, expressed	protein-coding	0.080000	0.601990	
mm_158758.1	chrX	166479570	166479770	-	1	NA	NA	NA	197	NM_019773	56382	Mm.25306	NM_019773	ENSMUSG00000079316	Rab9	2410064E05Rik|AI195561|Rab9a|Sid6061p	RAB9, member RAS oncogene family	protein-coding	0.085000	0.691542	
mm_26358.1	chr3	142549271	142549471	+	1	NA	NA	NA	-10681	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.000000	0.298507	
mm_117998.1	chr13	100497798	100497998	-	1	NA	NA	NA	-5289	NM_022011	23894	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	0.005000	0.263682	
mm_10507.1	chr2	16355982	16356182	+	1	NA	NA	NA	-222	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.055000	0.626866	
mm_145325.1	chr18	54990198	54990398	+	1	NA	NA	NA	-118	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.025000	0.457711	
mm_170103.1	chr17	39844485	39844685	+	1	NA	NA	NA	1588	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.150000	0.691542	
mm_43302.1	chr5	134613850	134614050	+	1	NA	NA	NA	1075	NM_022964	56743	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0.035000	0.582090	
mm_162015.1	chr19	44941398	44941598	+	1	NA	NA	NA	10379	NM_001081225	226151	Mm.212609	NM_172638	ENSMUSG00000036097	Fam178a	3632432H19|6030443O07Rik|AU014917|Slf2	family with sequence similarity 178, member A	protein-coding	0.010000	0.383085	
mm_42247.1	chr5	113907113	113907313	+	1	NA	NA	NA	1493	NM_011779	23790	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0.015000	0.532338	
mm_77357.1	chr8	119635398	119635598	-	1	NA	NA	NA	182	NM_025734	66733	Mm.358699	NM_025734	ENSMUSG00000045246	Kcng4	4921535I01Rik|AW049024|KV6.3|KV6.4	potassium voltage-gated channel, subfamily G, member 4	protein-coding	0.020000	0.572139	
mm_164424.1	chr16	45093667	45093867	+	1	NA	NA	NA	-286	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.005000	0.437811	
mm_85738.1	chr9	108566772	108566972	-	1	NA	NA	NA	470	NM_023247	66706	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	0.100000	0.626866	
mm_116082.1	chr13	28519582	28519782	-	1	NA	NA	NA	191191	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.005000	0.393035	
mm_150153.1	chr19	31950689	31950889	+	1	NA	NA	NA	82028	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.000000	0.313433	
mm_83796.1	chr9	52679311	52679511	-	1	NA	NA	NA	26	NM_178906	330941	Mm.335160	NM_177907	ENSMUSG00000078307	AI593442	E130102D23	expressed sequence AI593442	protein-coding	0.045000	0.686567	
mm_152228.1	chr19	8707788	8707988	-	1	NA	NA	NA	6009	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.045000	0.592040	
mm_105016.1	chr11	100415097	100415297	-	1	NA	NA	NA	-378	NM_176830	66180	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	0.030000	0.547264	
mm_67197.1	chr7	74065451	74065651	-	1	NA	NA	NA	-51869	NM_009181	20450	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0.015000	0.532338	
mm_50113.1	chr6	41533808	41534008	+	1	NA	NA	NA	12132	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.015000	0.427861	
mm_20557.1	chr2	131072563	131072763	-	1	NA	NA	NA	-8849	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.035000	0.597015	
mm_8964.1	chr1	165160691	165160891	-	1	NA	NA	NA	-18	NM_032005	83993	Mm.190649	NM_032005	ENSMUSG00000026572	Tbx19	AU019250|D1Ertd754e|Tpit	T-box 19	protein-coding	0.015000	0.527363	
mm_91891.1	chr10	59951453	59951653	-	1	NA	NA	NA	217	NM_029083	74747	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.075000	0.597015	
mm_111899.1	chr12	108702227	108702427	-	1	NA	NA	NA	-21	NM_027299	70059	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	0.090000	0.686567	
mm_37287.1	chr4	119169867	119170067	-	1	NA	NA	NA	3889	NM_001145935	195522	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	0.000000	0.472637	
mm_172558.1	chr8	106573287	106573487	-	1	NA	NA	NA	-13756	NR_045470	68692	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0.075000	0.577114	
mm_148742.1	chr19	5964187	5964387	+	1	NA	NA	NA	-81	NM_008893	18969	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0.105000	0.626866	
mm_83022.1	chr9	37019737	37019937	-	1	NA	NA	NA	127485	NM_148950	208076	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.015000	0.482587	
mm_18131.1	chr2	45004995	45005195	-	1	NA	NA	NA	18082	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.422886	
mm_89599.1	chr10	95980228	95980428	+	1	NA	NA	NA	39665	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.040000	0.467662	
mm_58409.1	chr7	3288981	3289181	+	1	NA	NA	NA	43	NM_001093764	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.035000	0.601990	
mm_90122.1	chr10	117285114	117285314	+	1	NA	NA	NA	-2942	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.010000	0.522388	-2(GGCTCTTTAGGC,-,0.00)
mm_7472.1	chr1	120489991	120490191	-	1	NA	NA	NA	14993	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.000000	0.422886	
mm_60273.1	chr7	43881057	43881257	+	1	NA	NA	NA	-15	NM_019928	56640	Mm.42080	NM_019928	ENSMUSG00000006948	Klk4	ESMP1|KLK-L1|PSTS|Prss17	kallikrein related-peptidase 4 (prostase, enamel matrix, prostate)	protein-coding	0.015000	0.587065	-32(GCTTATAAGCCC,+,0.00)
mm_32522.1	chr4	108834705	108834905	+	1	NA	NA	NA	127	NM_025334	66073	Mm.159965	NM_025334	ENSMUSG00000028567	Txndc12	0610040B21Rik|ERp16|ERp19	thioredoxin domain containing 12 (endoplasmic reticulum)	protein-coding	0.050000	0.537313	
mm_118741.1	chr14	22318345	22318545	+	1	NA	NA	NA	224353	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.005000	0.457711	
mm_157438.1	chrX	38634980	38635180	-	1	NA	NA	NA	63	NM_021550	59048	Mm.441410	NM_021550	ENSMUSG00000048970	C1galt1c1	1500002I11Rik|AB030184|C1GalT2|C81205|Cosmc	C1GALT1-specific chaperone 1	protein-coding	0.080000	0.646766	
mm_9823.1	chr1	182517260	182517460	-	1	NA	NA	NA	123	NM_009794	12334	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.120000	0.701493	
mm_13948.1	chr2	121299392	121299592	+	1	NA	NA	NA	4038	NM_001173506	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.025000	0.577114	
mm_106706.1	chr12	3806420	3806620	+	1	NA	NA	NA	-460	NM_007872	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.095000	0.746269	
mm_159183.1	chr2	111912931	111913131	-	1	NA	NA	NA	-103	NM_001011803	258023	Mm.377331	NM_001011803	ENSMUSG00000096566	Olfr1306	MOR245-15	olfactory receptor 1306	protein-coding	0.000000	0.353234	
mm_48378.1	chr5	139736177	139736377	-	1	NA	NA	NA	56	NM_174850	231830	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.100000	0.731343	
mm_28106.1	chr3	86548235	86548435	-	1	NA	NA	NA	-52	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.055000	0.572139	
mm_120946.1	chr14	76694102	76694302	+	1	NA	NA	NA	16634	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.035000	0.522388	
mm_47280.1	chr5	122084803	122085003	-	1	NA	NA	NA	-16077	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.010000	0.447761	
mm_145809.1	chr18	65412807	65413007	+	1	NA	NA	NA	-18090	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.005000	0.383085	-66(TGGTATTTAAGG,-,0.00)
mm_101474.1	chr11	30748994	30749194	-	1	NA	NA	NA	-22681	NM_134013	103554	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	0.010000	0.472637	
mm_53131.1	chr6	125145197	125145397	+	1	NA	NA	NA	73	NM_001302779	320678	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	0.050000	0.646766	
mm_69452.1	chr7	133112612	133112812	-	1	NA	NA	NA	10771	NM_009980	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.015000	0.527363	
mm_115978.1	chr13	24206188	24206388	-	1	NA	NA	NA	74502	NM_001311122	68732	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0.025000	0.497512	
mm_132600.1	chr16	38555652	38555852	+	1	NA	NA	NA	-2946	NM_001205286	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.010000	0.507463	
mm_33706.1	chr4	133658867	133659067	+	1	NA	NA	NA	13680	NM_001145955	230801	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.000000	0.477612	
mm_111772.1	chr12	104044194	104044394	-	1	NA	NA	NA	149	NM_026535	68054	Mm.20286	NM_026535	ENSMUSG00000041567	Serpina12	4632419J12Rik	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12	protein-coding	0.015000	0.522388	
mm_131125.1	chr16	5855673	5855873	+	1	NA	NA	NA	-29020	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.000000	0.572139	
mm_62749.1	chr7	111122753	111122953	+	1	NA	NA	NA	-178	NR_015573	75479	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0.095000	0.661692	
mm_26806.1	chr3	10183825	10184025	-	1	NA	NA	NA	-40	NM_001030305	18857	Mm.371777	NM_001030305	ENSMUSG00000052468	Pmp2	P2	peripheral myelin protein 2	protein-coding	0.010000	0.522388	
mm_76694.1	chr8	94180060	94180260	-	1	NA	NA	NA	1071	NM_013602	17748	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.050000	0.582090	
mm_54399.1	chr6	31528536	31528736	-	1	NA	NA	NA	35301	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	0.020000	0.537313	
mm_163179.1	chr11	89078109	89078309	+	1	NA	NA	NA	4368	NM_001033266	217071	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	0.010000	0.467662	
mm_48812.1	chr5	148995121	148995321	-	1	NA	NA	NA	-6	NR_102384	319982	Mm.33303	NR_102383	ENSMUSG00000106951	5930430L01Rik	-	RIKEN cDNA 5930430L01 gene	ncRNA	0.040000	0.517413	
mm_1636.1	chr1	74506610	74506810	+	1	NA	NA	NA	650	NM_021383	58184	Mm.291708	NM_021383	ENSMUSG00000026174	Cnot9	2610007F23Rik|AI593551|Fl10|Rqcd1	CCR4-NOT transcription complex, subunit 9	protein-coding	0.100000	0.671642	
mm_90260.1	chr10	122615796	122615996	+	1	NA	NA	NA	-46005	NR_040616	319272	Mm.411763	NR_040616		A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0.050000	0.537313	
mm_161500.1	chr15	89387036	89387236	+	1	NA	NA	NA	245	NM_001160178	546648	Mm.478787	NM_001160178	ENSMUSG00000091680	Klhdc7b	EG546648|Gm306	kelch domain containing 7B	protein-coding	0.020000	0.552239	
mm_48405.1	chr5	140246737	140246937	-	1	NA	NA	NA	74715	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.000000	0.437811	
mm_115578.1	chr13	11581477	11581677	-	1	NA	NA	NA	59525	NR_027813	664793	Mm.410565	NR_027813		Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo	0.010000	0.373134	
mm_163438.1	chr12	85474522	85474722	+	1	NA	NA	NA	721	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.070000	0.597015	
mm_128337.1	chr15	38518102	38518302	-	1	NA	NA	NA	1064	NM_001301688	54375	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.050000	0.582090	
mm_148031.1	chr18	70053281	70053481	-	1	NA	NA	NA	207	NM_001302798	80718	Mm.246753	NM_030554	ENSMUSG00000024511	Rab27b	2310021G14Rik|B130064M09Rik	RAB27B, member RAS oncogene family	protein-coding	0.040000	0.611940	
mm_76714.1	chr8	94667110	94667310	-	1	NA	NA	NA	119	NM_024269	107566	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0.065000	0.587065	
mm_157073.1	chrX	8252219	8252419	-	1	NA	NA	NA	87	NM_133991	54632	Mm.327529	NM_133991	ENSMUSG00000031171	Ftsj1	AI931847|Ftsj|Ftsjl|Sfc12	FtsJ RNA methyltransferase homolog 1 (E. coli)	protein-coding	0.070000	0.502488	
mm_166744.1	chr6	124865599	124865799	-	1	NA	NA	NA	-1782	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.010000	0.457711	
mm_49217.1	chr6	15755672	15755872	+	1	NA	NA	NA	35111	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.000000	0.358209	
mm_100659.1	chr11	3203247	3203447	-	1	NA	NA	NA	328	NM_001166549	74203	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0.040000	0.512438	
mm_157268.1	chrX	19235931	19236131	-	1	NA	NA	NA	-89060	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.010000	0.427861	
mm_113641.1	chr13	42103076	42103276	+	1	NA	NA	NA	51155	NM_007772	110521	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.015000	0.597015	
mm_53004.1	chr6	123270502	123270702	+	1	NA	NA	NA	8495	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.005000	0.338308	
mm_52545.1	chr6	115934264	115934464	+	1	NA	NA	NA	2437	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.015000	0.567164	
mm_104491.1	chr11	95834042	95834242	-	1	NA	NA	NA	-8153	NM_023121	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.045000	0.661692	
mm_146399.1	chr18	82910794	82910994	+	1	NA	NA	NA	15	NM_183033	329003	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.200000	0.815920	
mm_77284.1	chr8	116733185	116733385	-	1	NA	NA	NA	-294	NM_029441	75796	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.165000	0.835821	
mm_8467.1	chr1	153332790	153332990	-	1	NA	NA	NA	-104	NM_010683	226519	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	0.095000	0.751244	
mm_159554.1	chr4	106727826	106728026	-	1	NA	NA	NA	4	NM_001126487	381538	Mm.318201	NM_001126487	ENSMUSG00000047502	Mroh7	Gm1027|Heatr8	maestro heat-like repeat family member 7	protein-coding	0.025000	0.577114	
mm_136662.1	chr17	6079804	6080004	+	1	NA	NA	NA	76	NM_181392	66467	Mm.303441	NM_181392	ENSMUSG00000034345	Gtf2h5	2700017P07Rik|2810432H05Rik|D17Wsu155e	general transcription factor IIH, polypeptide 5	protein-coding	0.110000	0.651741	-4(GCCTAGAAAAAG,-,0.00)
mm_61717.1	chr7	81762835	81763035	+	1	NA	NA	NA	-18	NM_025997	67148	Mm.241472	NM_025997	ENSMUSG00000038646	Fam103a1	2410047I02Rik|2610204K14Rik|RAM	family with sequence similarity 103, member A1	protein-coding	0.095000	0.641791	
mm_32642.1	chr4	115057022	115057222	+	1	NA	NA	NA	-689	NM_001287388	21349	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.095000	0.621891	
mm_167045.1	chr7	80751744	80751944	+	1	NA	NA	NA	51487	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.020000	0.477612	
mm_73975.1	chr8	120535629	120535829	+	1	NA	NA	NA	-128	NM_001145897	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.055000	0.641791	
mm_34241.1	chr4	141210524	141210724	+	1	NA	NA	NA	-3332	NM_001081174	76166	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723	REM2 and RAB-like small GTPase 1	protein-coding	0.020000	0.472637	
mm_51221.1	chr6	71369960	71370160	+	1	NA	NA	NA	-3367	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.000000	0.452736	
mm_32312.1	chr4	103314399	103314599	+	1	NA	NA	NA	653	NM_025909	67013	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	0.010000	0.383085	
mm_162151.1	chrX	78245860	78246060	-	1	NA	NA	NA	-39	NM_001126321	236874	Mm.371699	NM_001126321	ENSMUSG00000079519	Gm14743	OTTMUSG00000017864	predicted gene 14743	protein-coding	0.010000	0.437811	-34(CTGTATAAAAAG,-,0.00)
mm_153274.1	chr19	37175967	37176167	-	1	NA	NA	NA	-4	NM_001290826	208922	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.015000	0.527363	
mm_123149.1	chr14	57099585	57099785	-	1	NA	NA	NA	5017	NM_008125	14619	Mm.390683	NM_008125	ENSMUSG00000046352	Gjb2	AI325222|Cnx26|Cx26|Gjb-2	gap junction protein, beta 2	protein-coding	0.010000	0.437811	
mm_160705.1	chr10	51677789	51677989	+	1	NA	NA	NA	129	NM_001159389	320995	Mm.109190	NM_177306	ENSMUSG00000019900	Rfx6	4930572O07Rik|Rfxdc1	regulatory factor X, 6	protein-coding	0.075000	0.646766	
mm_49011.1	chr6	4758358	4758558	+	1	NA	NA	NA	11152	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.005000	0.368159	
mm_29597.1	chr3	119783156	119783356	-	1	NA	NA	NA	132	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.120000	0.686567	
mm_30839.1	chr4	22519495	22519695	+	1	NA	NA	NA	29047	NR_131335	105500046		NR_131335	ENSMUSG00000107859	Gm30731	Pnky|lnc-pou3f2	predicted gene, 30731	ncRNA	0.025000	0.422886	
mm_21025.1	chr2	152413190	152413390	-	1	NA	NA	NA	1754	NM_175126	67917	Mm.391810	NM_175126	ENSMUSG00000074682	Zcchc3	2810406K24Rik	zinc finger, CCHC domain containing 3	protein-coding	0.020000	0.407960	44(ATCCTTAAAAGG,-,0.00),46(CCTTAAAAGGTT,+,0.00)
mm_121446.1	chr14	120430535	120430735	+	1	NA	NA	NA	-47826	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.015000	0.318408	
mm_17269.1	chr2	26072577	26072777	-	1	NA	NA	NA	19719	NM_001037098	67991	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.010000	0.388060	
mm_115617.1	chr13	12063449	12063649	-	1	NA	NA	NA	43396	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.005000	0.318408	
mm_91034.1	chr10	18227422	18227622	-	1	NA	NA	NA	7459	NM_001346751	215814	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	0.015000	0.502488	
mm_133622.1	chr16	91562916	91563116	+	1	NA	NA	NA	15922	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.035000	0.552239	-51(CTCCAGAAAAGG,-,0.00)
mm_45333.1	chr5	65679773	65679973	-	1	NA	NA	NA	17983	NM_001081321	71521	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0.000000	0.412935	-35(GGTTTTATAAAG,-,0.00)
mm_101557.1	chr11	33880022	33880222	-	1	NA	NA	NA	-36537	NM_001290690	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.000000	0.333333	
mm_120882.1	chr14	75327276	75327476	+	1	NA	NA	NA	43003	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0.005000	0.432836	14(CCTTTAAGAGAG,+,0.00)
mm_82041.1	chr9	122128878	122129078	+	1	NA	NA	NA	11712	NM_133741	20623	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0.015000	0.437811	
mm_35545.1	chr4	41496226	41496426	-	1	NA	NA	NA	6749	NM_001085515	329828	Mm.27054	NM_001085515	ENSMUSG00000046312	AI464131	AA408153|AI604836|Gm762|Kiaa1161|NET37	expressed sequence AI464131	protein-coding	0.010000	0.462687	
mm_19669.1	chr2	103372616	103372816	-	1	NA	NA	NA	48	NR_040332	319854	Mm.403818	NR_040332	ENSMUSG00000087278	A930006I01Rik	-	RIKEN cDNA A930006I01 gene	ncRNA	0.020000	0.497512	
mm_147684.1	chr18	60718621	60718821	-	1	NA	NA	NA	-5332	NM_008306	15531	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.020000	0.582090	
mm_131662.1	chr16	20611581	20611781	+	1	NA	NA	NA	80	NM_025462	107522	Mm.263319	NM_025462	ENSMUSG00000022842	Ece2	1810009K13Rik|6330509A19Rik|9630025D12Rik|BB127715|Ece-2	endothelin converting enzyme 2	protein-coding	0.080000	0.636816	
mm_167352.1	chr8	83741187	83741387	+	1	NA	NA	NA	24	NM_001163029	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.115000	0.731343	-83(GCTTTTATGCAG,+,0.00)
mm_66826.1	chr7	48691727	48691927	-	1	NA	NA	NA	-48026	NM_207537	404238	Mm.377926	NM_207537	ENSMUSG00000070546	Mrgprb3	MrgB3	MAS-related GPR, member B3	protein-coding	0.005000	0.442786	
mm_65196.1	chr7	19696715	19696915	-	1	NA	NA	NA	1583	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.090000	0.671642	
mm_34411.1	chr4	145245705	145245905	+	1	NA	NA	NA	1065	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.015000	0.567164	
mm_64500.1	chr7	143475079	143475279	+	1	NA	NA	NA	63	NM_001042760	18400	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0.030000	0.582090	
mm_169724.1	chr15	7974962	7975162	+	1	NA	NA	NA	124147	NM_001081402	545085	Mm.321312	NM_198413	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	0.030000	0.502488	-34(TCCTTTATAAGA,-,0.00)
mm_166809.1	chr7	6952117	6952317	+	1	NA	NA	NA	24445	NR_036631	116811	Mm.381671	NR_036631	ENSMUSG00000108043	Zim3	1700128I23Rik	zinc finger, imprinted 3	ncRNA	0.045000	0.477612	
mm_5599.1	chr1	39566931	39567131	-	1	NA	NA	NA	10316	NM_001033135	67702	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4|OTTMUSG00000026591	ring finger protein 149	protein-coding	0.015000	0.358209	89(TCTTTTAAAAAC,+,0.00)
mm_82171.1	chr9	123850194	123850394	+	1	NA	NA	NA	1367	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.000000	0.462687	
mm_80868.1	chr9	98563597	98563797	+	1	NA	NA	NA	-34	NM_015827	50797	Mm.400464	NM_015827	ENSMUSG00000032458	Copb2	AI256832	coatomer protein complex, subunit beta 2 (beta prime)	protein-coding	0.110000	0.671642	
mm_14814.1	chr2	146200556	146200756	+	1	NA	NA	NA	-21341	NM_016889	53626	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	0.025000	0.457711	-74(CTCTTTATGAGC,-,0.00)
mm_152470.1	chr19	10968666	10968866	-	1	NA	NA	NA	5904	NM_023529	69826	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	0.020000	0.562189	
mm_117916.1	chr13	99432716	99432916	-	1	NA	NA	NA	-19990	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.040000	0.482587	
mm_520.1	chr1	37494501	37494701	+	1	NA	NA	NA	-5996	NR_024017	77633	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.015000	0.467662	
mm_96218.1	chr11	62458523	62458723	+	1	NA	NA	NA	163	NM_001039536	327942	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.065000	0.631841	
mm_85583.1	chr9	107298121	107298321	-	1	NA	NA	NA	1562	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.010000	0.522388	
mm_39320.1	chr5	8068353	8068553	+	1	NA	NA	NA	11911	NM_001080974	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.010000	0.467662	-64(GCTCTTATGGAG,+,0.00)
mm_2043.1	chr1	87281660	87281860	+	1	NA	NA	NA	17396	NM_028889	98363	Mm.247951	NM_028889	ENSMUSG00000026255	Efhd1	4931430I01Rik|AI452351|PP3051|mitocalcin	EF hand domain containing 1	protein-coding	0.035000	0.427861	
mm_7029.1	chr1	87099324	87099524	-	1	NA	NA	NA	2182	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.020000	0.512438	
mm_165836.1	chr3	156642078	156642278	+	1	NA	NA	NA	80384	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.010000	0.298507	
mm_129751.1	chr15	82338761	82338961	-	1	NA	NA	NA	-35	NM_008669	17939	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	0.095000	0.631841	
mm_99409.1	chr11	102268647	102268847	+	1	NA	NA	NA	-76	NM_148953	217217	Mm.216432	NM_148953	ENSMUSG00000034768	Asb16	-	ankyrin repeat and SOCS box-containing 16	protein-coding	0.005000	0.542289	-56(GCCTATTTATAG,-,0.00),-54(CTATTTATAGCC,+,0.00)
mm_133062.1	chr16	58466180	58466380	+	1	NA	NA	NA	57032	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.025000	0.447761	
mm_97177.1	chr11	75532108	75532308	+	1	NA	NA	NA	96	NM_001199283	215113	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.040000	0.611940	
mm_115654.1	chr13	12340428	12340628	-	1	NA	NA	NA	204	NM_033268	11472	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	0.050000	0.552239	
mm_17203.1	chr2	25469058	25469258	-	1	NA	NA	NA	591	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.030000	0.631841	
mm_75649.1	chr8	65129239	65129439	-	1	NA	NA	NA	198	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA	0.040000	0.522388	
mm_139505.1	chr17	56304113	56304313	+	1	NA	NA	NA	-100	NM_001111078	18140	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	0.125000	0.721393	
mm_1734.1	chr1	75400017	75400217	+	1	NA	NA	NA	32	NM_001173477	11790	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0.020000	0.701493	
mm_31608.1	chr4	58645106	58645306	+	1	NA	NA	NA	-91715	NM_010336	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.000000	0.487562	10(GCTTTAATACCA,+,0.00)
mm_132146.1	chr16	32099839	32100039	+	1	NA	NA	NA	137	NM_025892	66994	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0.070000	0.646766	
mm_54506.1	chr6	35510677	35510877	-	1	NA	NA	NA	29111	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.288557	-29(ATTTTTAAAGGG,+,0.00)
mm_104086.1	chr11	86614184	86614384	-	1	NA	NA	NA	-30126	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.487562	-35(TGGTATAAATGG,-,0.00)
mm_26548.1	chr3	146220882	146221082	+	1	NA	NA	NA	21	NM_022983	65086	Mm.155520	NM_022983	ENSMUSG00000036832	Lpar3	Edg7|lpA3	lysophosphatidic acid receptor 3	protein-coding	0.120000	0.756219	
mm_126347.1	chr15	79906450	79906650	+	1	NA	NA	NA	11527	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.030000	0.557214	
mm_158668.1	chrX	157568887	157569087	-	1	NA	NA	NA	-2	NM_001098723	100073351	Mm.491276	NM_001098723	ENSMUSG00000046873	Yy2	-	Yy2 transcription factor	protein-coding	0.090000	0.512438	
mm_133405.1	chr16	84835232	84835432	+	1	NA	NA	NA	208	NM_008065	14390	Mm.18974	NM_008065	ENSMUSG00000008976	Gabpa	GABPalpha	GA repeat binding protein, alpha	protein-coding	0.090000	0.656716	
mm_153816.1	chr19	46148278	46148478	-	1	NA	NA	NA	-53	NM_008852	18742	Mm.6255	NM_008852	ENSMUSG00000025229	Pitx3	Ptx3|ak	paired-like homeodomain transcription factor 3	protein-coding	0.085000	0.746269	
mm_44226.1	chr5	4875586	4875786	-	1	NA	NA	NA	-117470	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.000000	0.288557	
mm_82961.1	chr9	35611817	35612017	-	1	NA	NA	NA	-32	NM_020264	56872	Mm.390143	NM_020264	ENSMUSG00000032099	Pate4	9530004K16Rik|Pate-B|Svs7	prostate and testis expressed 4	protein-coding	0.005000	0.412935	14(CTTTATATAGAG,+,0.00)
mm_67553.1	chr7	81572151	81572351	-	1	NA	NA	NA	959	NM_001004185	434204	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	0.005000	0.482587	
mm_20913.1	chr2	150600339	150600539	-	1	NA	NA	NA	8084	NM_027977	71881	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	0.010000	0.492537	
mm_166321.1	chr5	111380120	111380320	+	1	NA	NA	NA	-37946	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.005000	0.452736	9(GTGCCTATAAGC,-,0.00)
mm_89606.1	chr10	96002812	96003012	+	1	NA	NA	NA	62249	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.010000	0.363184	
mm_124621.1	chr15	3280002	3280202	+	1	NA	NA	NA	9125	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.010000	0.303483	
mm_139900.1	chr17	70853017	70853217	+	1	NA	NA	NA	415	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.085000	0.661692	
mm_62257.1	chr7	99296422	99296622	+	1	NA	NA	NA	28176	NM_001043355	17760	Mm.154087	NM_010837	ENSMUSG00000055407	Map6	2810411E12Rik|Map-6|Mtap6|STOP	microtubule-associated protein 6	protein-coding	0.005000	0.457711	
mm_18960.1	chr2	76796370	76796570	-	1	NA	NA	NA	121155	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.025000	0.452736	
mm_99973.1	chr11	113786082	113786282	+	1	NA	NA	NA	-34367	NM_001163346	56699	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.020000	0.502488	
mm_74863.1	chr8	24903271	24903471	-	1	NA	NA	NA	45433	NM_001293693	353188	Mm.269223	NM_153397	ENSMUSG00000037437	Adam32	-	a disintegrin and metallopeptidase domain 32	protein-coding	0.010000	0.427861	
mm_51756.1	chr6	87776039	87776239	+	1	NA	NA	NA	-1997	NM_018762	54368	Mm.12897	NM_018762	ENSMUSG00000030054	Gp9	Cd42|GPIX	glycoprotein 9 (platelet)	protein-coding	0.005000	0.497512	
mm_84541.1	chr9	67299159	67299359	-	1	NA	NA	NA	-62533	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	0.030000	0.467662	
mm_41901.1	chr5	105558775	105558975	+	1	NA	NA	NA	39404	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.015000	0.417910	
mm_61114.1	chr7	54835519	54835719	+	1	NA	NA	NA	374	NM_178705	233271	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	0.060000	0.616915	
mm_63435.1	chr7	127478970	127479170	+	1	NA	NA	NA	-6151	NM_010183	14123	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.100000	0.741294	-1(CTGTTTTAAAGA,-,0.00)
mm_7266.1	chr1	95667398	95667598	-	1	NA	NA	NA	96	NM_009183	20452	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.075000	0.641791	
mm_39660.1	chr5	25100630	25100830	+	1	NA	NA	NA	-88	NM_145401	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.080000	0.681592	
mm_155697.1	chrX	94481786	94481986	+	1	NA	NA	NA	39154	NR_045323	100503393	Mm.402891	NR_045323	ENSMUSG00000084904	Gm14827	OTTMUSG00000018126	predicted gene 14827	ncRNA	0.005000	0.383085	-79(GCTTTTAAGAAG,+,0.00),10(CCTTTTAAGACT,+,0.00)
mm_2516.1	chr1	106317129	106317329	+	1	NA	NA	NA	145360	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.005000	0.422886	
mm_102096.1	chr11	52306617	52306817	-	1	NA	NA	NA	-23703	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.010000	0.507463	
mm_21425.1	chr2	158228600	158228800	-	1	NA	NA	NA	524	NM_001131021	228846	Mm.187574	NM_177657	ENSMUSG00000037813	D630003M21Rik	-	RIKEN cDNA D630003M21 gene	protein-coding	0.015000	0.437811	
mm_74033.1	chr8	121806325	121806525	+	1	NA	NA	NA	23144	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.040000	0.537313	
mm_164929.1	chr18	81087421	81087621	+	1	NA	NA	NA	-100943	NM_178280	20689	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	sal-like 3 (Drosophila)	protein-coding	0.005000	0.497512	
mm_92312.1	chr10	75303254	75303454	-	1	NA	NA	NA	-13523	NM_009630	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.005000	0.447761	
mm_118051.1	chr13	101711709	101711909	-	1	NA	NA	NA	-19179	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.020000	0.393035	
mm_30700.1	chr4	11758097	11758297	+	1	NA	NA	NA	40	NM_019753	12557	Mm.33402	NM_019753	ENSMUSG00000028217	Cdh17	HPT-1|HPT-1/LI	cadherin 17	protein-coding	0.010000	0.457711	
mm_101911.1	chr11	49712527	49712727	-	1	NA	NA	NA	95	NM_212484	104625	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0.170000	0.761194	
mm_20070.1	chr2	120404596	120404796	-	1	NA	NA	NA	-580	NM_001110496	211499	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0.025000	0.472637	
mm_95174.1	chr11	40755356	40755556	+	1	NA	NA	NA	-170	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.040000	0.532338	
mm_142320.1	chr17	43158193	43158393	-	1	NA	NA	NA	-2	NR_045153	545207	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0.025000	0.537313	
mm_54307.1	chr6	29609700	29609900	-	1	NA	NA	NA	-193	NM_177296	320938	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	0.085000	0.621891	
mm_5203.1	chr1	13374354	13374554	-	1	NA	NA	NA	-371	NM_008678	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.050000	0.621891	
mm_148846.1	chr19	6375915	6376115	+	1	NA	NA	NA	-8393	NM_011224	19309	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0.035000	0.482587	34(TCTTATAAACAC,+,0.00)
mm_56277.1	chr6	91116709	91116909	-	1	NA	NA	NA	17	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.155000	0.781095	
mm_40558.1	chr5	60744587	60744787	+	1	NA	NA	NA	-758685	NR_040682	71057	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.000000	0.253731	-32(TCTTTAATACCA,+,0.00),11(TTCCTTATAAGG,-,0.00),13(CCTTATAAGGTT,+,0.00)
mm_33745.1	chr4	134243661	134243861	+	1	NA	NA	NA	-2	NR_040435	77490	Mm.426238	NR_040435	ENSMUSG00000086322	E130218I03Rik	E130106C14Rik	RIKEN cDNA E130218I03 gene	ncRNA	0.015000	0.601990	
mm_44041.1	chr5	147546426	147546626	+	1	NA	NA	NA	115946	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.010000	0.318408	
mm_153219.1	chr19	34747389	34747589	-	1	NA	NA	NA	-378	NM_172838	240638	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0.025000	0.527363	
mm_110874.1	chr12	73880375	73880575	-	1	NA	NA	NA	-20849	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.000000	0.512438	-34(CAGTATATAAGC,-,0.00)
mm_17362.1	chr2	26668676	26668876	-	1	NA	NA	NA	2506	NM_010695	16821	Mm.123925	NM_010695	ENSMUSG00000026919	Lcn4	A630045M08Rik|Vnsp2	lipocalin 4	protein-coding	0.005000	0.442786	87(GCTTATCTGGCC,+,0.00)
mm_149997.1	chr19	29271422	29271622	+	1	NA	NA	NA	19719	NM_008413	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.025000	0.393035	
mm_148652.1	chr19	5493669	5493869	+	1	NA	NA	NA	3314	NM_007687	12631	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.025000	0.512438	
mm_105326.1	chr11	102895876	102896076	-	1	NA	NA	NA	1224	NM_001131020	14580	Mm.1239	NM_010277	ENSMUSG00000020932	Gfap	AI836096	glial fibrillary acidic protein	protein-coding	0.040000	0.577114	
mm_22959.1	chr3	32510450	32510650	+	1	NA	NA	NA	0	NM_001161818	67778	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	0.085000	0.726368	
mm_52399.1	chr6	113307776	113307976	+	1	NA	NA	NA	739	NM_001282126	78783	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.045000	0.616915	
mm_33344.1	chr4	129308316	129308516	+	1	NA	NA	NA	20795	NM_023485	68828	Mm.132243	NM_023485	ENSMUSG00000001333	Sync	1110057H03Rik|SNIP4	syncoilin	protein-coding	0.010000	0.442786	
mm_20260.1	chr2	126607508	126607708	-	1	NA	NA	NA	11070	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.005000	0.437811	
mm_55449.1	chr6	67271875	67272075	-	1	NA	NA	NA	4996	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.065000	0.462687	
mm_25797.1	chr3	127633037	127633237	+	1	NA	NA	NA	-8	NM_009718	11924	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	0.040000	0.587065	-33(TGGTATATAAGG,-,0.00)
mm_147145.1	chr18	36559800	36560000	-	1	NA	NA	NA	-703	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.070000	0.587065	
mm_171563.1	chr4	147234250	147234450	+	1	NA	NA	NA	58484	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.005000	0.507463	
mm_129514.1	chr15	79062638	79062838	-	1	NA	NA	NA	121	NM_144849	223690	Mm.24262	NM_144849	ENSMUSG00000033055	Ankrd54	C730048E16Rik|EST1068184|EST475269|Liar	ankyrin repeat domain 54	protein-coding	0.170000	0.761194	
mm_120638.1	chr14	70467776	70467976	+	1	NA	NA	NA	10359	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.025000	0.577114	
mm_69024.1	chr7	126792351	126792551	-	1	NA	NA	NA	20	NM_019674	56420	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|Ppx	protein phosphatase 4, catalytic subunit	protein-coding	0.130000	0.691542	
mm_125024.1	chr15	25726529	25726729	+	1	NA	NA	NA	104079	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.005000	0.303483	
mm_146660.1	chr18	12061327	12061527	-	1	NA	NA	NA	60110	NR_110356	338363	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	0.000000	0.437811	
mm_92176.1	chr10	67648222	67648422	-	1	NA	NA	NA	-99367	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.035000	0.557214	
mm_15725.1	chr2	164084090	164084290	+	1	NA	NA	NA	10012	NM_021420	58231	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.015000	0.497512	
mm_69843.1	chr7	141328095	141328295	-	1	NA	NA	NA	65	NM_027797	71448	Mm.248960	NM_027797	ENSMUSG00000025505	Tmem80	5530601I19Rik	transmembrane protein 80	protein-coding	0.135000	0.701493	
mm_11774.1	chr2	38931840	38932040	+	1	NA	NA	NA	-40	NM_172854	241327	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	0.065000	0.691542	
mm_3308.1	chr1	137898589	137898789	+	1	NA	NA	NA	-67766	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.040000	0.532338	
mm_63020.1	chr7	121034425	121034625	+	1	NA	NA	NA	80	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.115000	0.716418	
mm_17840.1	chr2	34371663	34371863	-	1	NA	NA	NA	282	NM_001290576	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.085000	0.631841	
mm_101518.1	chr11	32534020	32534220	-	1	NA	NA	NA	854	NM_009288	20868	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.015000	0.552239	48(GTGTCTATATGG,-,0.00)
mm_126579.1	chr15	82275139	82275339	+	1	NA	NA	NA	304	NM_011889	24050	Mm.309707	NM_011889	ENSMUSG00000022456	Sept3	3110018K01Rik|AV154067|B530002E20Rik|Sep3	septin 3	protein-coding	0.185000	0.840796	
mm_61297.1	chr7	67678962	67679162	+	1	NA	NA	NA	31652	NM_025905	67009	Mm.249356	NM_025905	ENSMUSG00000030555	Ttc23	1600012K10Rik	tetratricopeptide repeat domain 23	protein-coding	0.040000	0.542289	
mm_54623.1	chr6	38637094	38637294	-	1	NA	NA	NA	45	NM_001033171	74253	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0.095000	0.626866	
mm_70393.1	chr8	11009087	11009287	+	1	NA	NA	NA	-757	NM_001081212	384783	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.125000	0.766169	
mm_64850.1	chr7	13034035	13034235	-	1	NA	NA	NA	642	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.015000	0.482587	
mm_52778.1	chr6	121245838	121246038	+	1	NA	NA	NA	32	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.060000	0.646766	
mm_53881.1	chr6	3340685	3340885	-	1	NA	NA	NA	52266	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.015000	0.407960	
mm_95701.1	chr11	54437671	54437871	+	1	NA	NA	NA	-408	NM_173753	216742	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.025000	0.363184	
mm_72979.1	chr8	92901343	92901543	+	1	NA	NA	NA	48	NM_027112	69543	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	0.025000	0.542289	
mm_160189.1	chr7	55806156	55806356	+	1	NA	NA	NA	12108	NM_146190	233276	Mm.284306	NM_146190	ENSMUSG00000033790	Tubgcp5	B130010C12Rik|GCP5|mKIAA1899	tubulin, gamma complex associated protein 5	protein-coding	0.000000	0.233831	-64(TCTTTTAAATGG,+,0.00),-43(GCCTTTAGGGCA,+,0.00)
mm_32961.1	chr4	119814282	119814482	+	1	NA	NA	NA	-296	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.020000	0.462687	
mm_81304.1	chr9	108339858	108340058	+	1	NA	NA	NA	878	NM_001329528	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.065000	0.577114	
mm_34660.1	chr4	150866720	150866920	+	1	NA	NA	NA	11729	NM_133753	74155	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.020000	0.512438	
mm_160311.1	chr7	141213998	141214198	-	1	NA	NA	NA	-18	NM_028050	72000	Mm.334314	NM_028050	ENSMUSG00000025500	Lmntd2	1600016N20Rik	lamin tail domain containing 2	protein-coding	0.005000	0.552239	
mm_122953.1	chr14	54967890	54968090	-	1	NA	NA	NA	-797	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.005000	0.552239	
mm_68955.1	chr7	126564670	126564870	-	1	NA	NA	NA	1596	NM_146200	56347	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.025000	0.482587	
mm_160633.1	chr9	107606962	107607162	-	1	NA	NA	NA	30	NM_001291538	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.005000	0.606965	
mm_147649.1	chr18	60501539	60501739	-	1	NA	NA	NA	344	NM_134133	106878	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.090000	0.671642	
mm_44619.1	chr5	25532469	25532669	-	1	NA	NA	NA	2551	NR_027388	73571	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0.020000	0.517413	
mm_82235.1	chr9	3037957	3038157	-	1	NA	NA	NA	686	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.030000	0.358209	
mm_139531.1	chr17	56673274	56673474	+	1	NA	NA	NA	149	NM_027933	71810	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	0.100000	0.711443	
mm_48199.1	chr5	137531873	137532073	-	1	NA	NA	NA	1256	NM_010312	14693	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	0.055000	0.646766	
mm_137442.1	chr17	26509634	26509834	+	1	NA	NA	NA	-1262	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.035000	0.452736	52(ATTTTTAAAGGG,+,0.00)
mm_158291.1	chrX	112698350	112698550	-	1	NA	NA	NA	201	NM_181579	69693	Mm.34964	NM_181579	ENSMUSG00000034607	Pof1b	2310066B14Rik	premature ovarian failure 1B	protein-coding	0.010000	0.502488	
mm_136324.1	chr16	92321314	92321514	-	1	NA	NA	NA	27	NM_029252	75328	Mm.72970	NM_029252	ENSMUSG00000051728	4930563D23Rik	-	RIKEN cDNA 4930563D23 gene	protein-coding	0.020000	0.522388	
mm_85099.1	chr9	94533729	94533929	-	1	NA	NA	NA	4252	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0.020000	0.497512	
mm_101037.1	chr11	8601038	8601238	-	1	NA	NA	NA	63397	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.005000	0.502488	56(GTCTTTTAAAAA,-,0.00)
mm_63129.1	chr7	123001567	123001767	+	1	NA	NA	NA	31103	NM_175023	19647	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6	protein-coding	0.040000	0.547264	
mm_50688.1	chr6	51584532	51584732	+	1	NA	NA	NA	40109	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.025000	0.487562	
mm_107895.1	chr12	70649922	70650122	+	1	NA	NA	NA	-175492	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.005000	0.447761	
mm_12660.1	chr2	75633927	75634127	+	1	NA	NA	NA	-25232	NM_146130	229279	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.020000	0.611940	
mm_121359.1	chr14	117068424	117068624	+	1	NA	NA	NA	143227	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.005000	0.472637	
mm_52489.1	chr6	114648750	114648950	+	1	NA	NA	NA	5753	NM_001253717	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.005000	0.487562	
mm_172329.1	chr7	108026356	108026556	-	1	NA	NA	NA	5885	NM_146734	258729	Mm.223162	NM_146734	ENSMUSG00000094426	Olfr478	MOR204-13	olfactory receptor 478	protein-coding	0.040000	0.621891	
mm_18538.1	chr2	64393758	64393958	-	1	NA	NA	NA	-295820	NM_001267847	60344	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.015000	0.393035	
mm_51553.1	chr6	83325978	83326178	+	1	NA	NA	NA	39	NM_145571	232157	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	0.110000	0.681592	
mm_55177.1	chr6	52012414	52012614	-	1	NA	NA	NA	35	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.090000	0.661692	
mm_12484.1	chr2	71529829	71530029	+	1	NA	NA	NA	484	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.015000	0.467662	
mm_129471.1	chr15	78673145	78673345	-	1	NA	NA	NA	44868	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0.065000	0.587065	
mm_98406.1	chr11	94329546	94329746	+	1	NA	NA	NA	1645	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.010000	0.432836	
mm_6172.1	chr1	65080182	65080382	-	1	NA	NA	NA	2008	NM_144761	12965	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	0.010000	0.447761	
mm_140574.1	chr17	9669617	9669817	-	1	NA	NA	NA	-13	NM_001163836	67543	Mm.26987	NM_026226	ENSMUSG00000046173	Pabpc6	4932702K14Rik|AI428050|Pabpc3	poly(A) binding protein, cytoplasmic 6	protein-coding	0.045000	0.606965	
mm_110403.1	chr12	44268939	44269139	-	1	NA	NA	NA	-115	NM_026164	67452	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	0.045000	0.552239	
mm_80189.1	chr9	72394020	72394220	+	1	NA	NA	NA	-44409	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.025000	0.527363	
mm_170033.1	chr17	22364108	22364308	+	1	NA	NA	NA	2755	NM_145484	224598	Mm.390945	NM_145484	ENSMUSG00000044501	Zfp758	BC021442	zinc finger protein 758	protein-coding	0.015000	0.542289	-36(CCTCTTATAAGC,+,0.00)
mm_118835.1	chr14	25607740	25607940	+	1	NA	NA	NA	4327	NM_001309430	100188919	Mm.473810	NM_001309430		Israa	-	immune system released activating agent	protein-coding	0.140000	0.731343	
mm_140899.1	chr17	24097019	24097219	-	1	NA	NA	NA	-23634	NM_027008	69259	Mm.28171	NM_027008	ENSMUSG00000016946	Kctd5	2610030N08Rik|mKIAA0176	potassium channel tetramerisation domain containing 5	protein-coding	0.015000	0.507463	
mm_156355.1	chrX	139335393	139335593	+	1	NA	NA	NA	1810	NM_011635	22037	Mm.1297	NM_011635	ENSMUSG00000051257	Trap1a	Tra-P1A	tumor rejection antigen P1A	protein-coding	0.010000	0.502488	
mm_128261.1	chr15	36771306	36771506	-	1	NA	NA	NA	19526	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.005000	0.417910	-79(ACTTTTATGGGG,+,0.00)
mm_132779.1	chr16	44787198	44787398	+	1	NA	NA	NA	21562	NM_021325	57781	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.005000	0.333333	
mm_39471.1	chr5	19907637	19907837	+	1	NA	NA	NA	219	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.015000	0.497512	
mm_40898.1	chr5	75155806	75156006	+	1	NA	NA	NA	-260	NM_001083316	18595	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.050000	0.641791	
mm_4024.1	chr1	165765749	165765949	+	1	NA	NA	NA	2069	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.020000	0.542289	
mm_96654.1	chr11	69368790	69368990	+	1	NA	NA	NA	536	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.160000	0.766169	
mm_149330.1	chr19	10843165	10843365	+	1	NA	NA	NA	721	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.035000	0.592040	
mm_7541.1	chr1	124490785	124490985	-	1	NA	NA	NA	-445326	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.015000	0.368159	
mm_11573.1	chr2	32916314	32916514	+	1	NA	NA	NA	40280	NM_146119	227737	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.025000	0.582090	-26(CTGTCTAAAAAC,-,0.00)
mm_16971.1	chr2	17731302	17731502	-	1	NA	NA	NA	-334	NM_028757	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0.045000	0.666667	
mm_132980.1	chr16	52129639	52129839	+	1	NA	NA	NA	98190	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.005000	0.402985	-12(TCTTTAATGGTG,+,0.00)
mm_74950.1	chr8	25976639	25976839	-	1	NA	NA	NA	5	NM_029884	52120	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	0.125000	0.736318	
mm_13251.1	chr2	98663732	98663932	+	1	NA	NA	NA	1196175	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.010000	0.358209	
mm_478.1	chr1	36691442	36691642	+	1	NA	NA	NA	55	NM_009942	12859	Mm.180182	NM_009942	ENSMUSG00000061518	Cox5b	-	cytochrome c oxidase subunit Vb	protein-coding	0.090000	0.631841	
mm_81640.1	chr9	110895646	110895846	+	1	NA	NA	NA	15424	NM_001146060	235633	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0.020000	0.577114	
mm_65125.1	chr7	19458634	19458834	-	1	NA	NA	NA	-240	NM_172279	232944	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.110000	0.781095	
mm_39353.1	chr5	9100562	9100762	+	1	NA	NA	NA	-75	NM_001081029	652925	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.110000	0.696517	
mm_29550.1	chr3	116807644	116807844	-	1	NA	NA	NA	422	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.015000	0.477612	
mm_151095.1	chr19	47854009	47854209	+	1	NA	NA	NA	-864	NM_010362	14873	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0.015000	0.492537	
mm_143002.1	chr17	56423138	56423338	-	1	NA	NA	NA	-4329	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0.035000	0.562189	
mm_11050.1	chr2	27180881	27181081	+	1	NA	NA	NA	15474	NM_138942	13166	Mm.167781	NM_138942	ENSMUSG00000000889	Dbh	-	dopamine beta hydroxylase	protein-coding	0.020000	0.547264	
mm_30152.1	chr3	142606763	142606963	-	1	NA	NA	NA	12016	NM_010259	14468	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.010000	0.517413	
mm_17245.1	chr2	25621877	25622077	-	1	NA	NA	NA	25	NM_001040130	51875	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	0.060000	0.651741	
mm_68576.1	chr7	115846036	115846236	-	1	NA	NA	NA	4	NM_001277326	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.005000	0.427861	
mm_51589.1	chr6	83841546	83841746	+	1	NA	NA	NA	-9905	NM_146169	232164	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	0.040000	0.562189	
mm_159836.1	chr5	131475005	131475205	-	1	NA	NA	NA	-167583	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.025000	0.616915	
mm_161085.1	chr12	85139912	85140112	-	1	NA	NA	NA	11252	NM_146244	238323	Mm.44829	NM_146244	ENSMUSG00000019235	Rps6kl1	A830084F09Rik|AW046440	ribosomal protein S6 kinase-like 1	protein-coding	0.040000	0.497512	
mm_83080.1	chr9	39604168	39604368	-	1	NA	NA	NA	-144	NM_178737	244810	Mm.208855	NM_178737	ENSMUSG00000038112	AW551984	3222402N16	expressed sequence AW551984	protein-coding	0.025000	0.512438	
mm_68856.1	chr7	126369465	126369665	-	1	NA	NA	NA	3	NM_010689	16797	Mm.10280	NM_010689	ENSMUSG00000030742	Lat	p36-38|pp36	linker for activation of T cells	protein-coding	0.035000	0.666667	
mm_126250.1	chr15	79028437	79028637	+	1	NA	NA	NA	325	NM_008197	14958	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	0.130000	0.746269	
mm_45168.1	chr5	51458026	51458226	-	1	NA	NA	NA	95795	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.015000	0.402985	
mm_15214.1	chr2	154220095	154220295	+	1	NA	NA	NA	-3547	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.010000	0.582090	
mm_153472.1	chr19	41273172	41273372	-	1	NA	NA	NA	-9268	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.005000	0.452736	
mm_148464.1	chr19	4082395	4082595	+	1	NA	NA	NA	7	NM_001160253	29866	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0.015000	0.567164	
mm_52582.1	chr6	116650564	116650764	+	1	NA	NA	NA	-20	NM_145980	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.025000	0.537313	
mm_25370.1	chr3	107101685	107101885	+	1	NA	NA	NA	218	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.055000	0.646766	
mm_131979.1	chr16	25011312	25011512	+	1	NA	NA	NA	-48227	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.015000	0.437811	
mm_153001.1	chr19	30115145	30115345	-	1	NA	NA	NA	60196	NM_138595	104174	Mm.274852	NM_138595	ENSMUSG00000024827	Gldc	D030049L12Rik|D19Wsu57e	glycine decarboxylase	protein-coding	0.040000	0.567164	
mm_147606.1	chr18	56919144	56919344	-	1	NA	NA	NA	6304	NM_177115	320253	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0.000000	0.427861	-8(ACCCCTTAAAGG,-,0.00),-7(CCCCTTAAAGGC,+,0.00),-7(CCCCTTAAAGGC,-,0.00),-6(CCCTTAAAGGCA,+,0.00),86(AACTATAAATGG,-,0.00)
mm_128635.1	chr15	59082016	59082216	-	1	NA	NA	NA	-90	NM_144800	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.180000	0.786070	
mm_55115.1	chr6	50393918	50394118	-	1	NA	NA	NA	-11181	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.030000	0.502488	
mm_21090.1	chr2	153182382	153182582	-	1	NA	NA	NA	21181	NM_133847	99237	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.020000	0.587065	
mm_46957.1	chr5	114973226	114973426	-	1	NA	NA	NA	-2264	NM_009327	21405	Mm.332607	NM_009327	ENSMUSG00000029556	Hnf1a	AI323641|HNF1|HNF1-alpha|HNF1[a]|Hnf-1|Hnf1alpha|LFB1|Tcf-1|Tcf1	HNF1 homeobox A	protein-coding	0.020000	0.567164	
mm_90770.1	chr10	5823746	5823946	-	1	NA	NA	NA	97	NM_175374	108853	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	0.060000	0.562189	
mm_99079.1	chr11	99388897	99389097	+	1	NA	NA	NA	367	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.045000	0.601990	
mm_115176.1	chr13	108316249	108316449	+	1	NA	NA	NA	12	NM_178683	218581	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.110000	0.666667	
mm_17510.1	chr2	29121006	29121206	-	1	NA	NA	NA	-3886	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.000000	0.467662	
mm_2232.1	chr1	91044329	91044529	+	1	NA	NA	NA	-9015	NM_001310732	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.030000	0.547264	
mm_16951.1	chr2	17365214	17365414	-	1	NA	NA	NA	-198200	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	0.005000	0.462687	
mm_128762.1	chr15	65976703	65976903	-	1	NA	NA	NA	1	NM_001145096	654498	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0.015000	0.437811	
mm_40078.1	chr5	34363280	34363480	+	1	NA	NA	NA	-6553	NM_001243123	231128	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	0.000000	0.437811	-77(GGGTTTAAATAG,-,0.00),-75(GTTTAAATAGGA,+,0.00)
mm_117574.1	chr13	85538215	85538415	-	1	NA	NA	NA	-248829	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.000000	0.393035	
mm_102552.1	chr11	61366601	61366801	-	1	NA	NA	NA	11374	NM_026183	67473	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	0.005000	0.552239	
mm_26277.1	chr3	142505429	142505629	+	1	NA	NA	NA	8595	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.030000	0.552239	
mm_91817.1	chr10	54076501	54076701	-	1	NA	NA	NA	679	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.010000	0.457711	
mm_3354.1	chr1	138166579	138166779	+	1	NA	NA	NA	8447	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.407960	-34(GTGCATAAAAGG,-,0.00)
mm_148469.1	chr19	4097278	4097478	+	1	NA	NA	NA	27	NM_026373	52004	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0.090000	0.686567	
mm_141258.1	chr17	27597112	27597312	-	1	NA	NA	NA	25752	NM_001291046	56409	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0.055000	0.577114	
mm_158075.1	chrX	101264799	101264999	-	1	NA	NA	NA	-907	NM_001317221	245536	Mm.212463	NM_001033362	ENSMUSG00000090141	Gm614	-	predicted gene 614	protein-coding	0.025000	0.552239	
mm_31447.1	chr4	48586896	48587096	+	1	NA	NA	NA	1803	NM_021436	230157	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0.010000	0.363184	77(GCCCATTAAAAG,-,0.00),79(CCATTAAAAGCC,+,0.00)
mm_106976.1	chr12	9485305	9485505	+	1	NA	NA	NA	85180	NR_045488	69420	Mm.396193	NR_045488	ENSMUSG00000099360	1700022H16Rik	-	RIKEN cDNA 1700022H16 gene	ncRNA	0.000000	0.432836	
mm_40840.1	chr5	73284144	73284344	+	1	NA	NA	NA	-60	NR_040687	72276	Mm.271215	NR_040687	ENSMUSG00000100175	1700025M24Rik	-	RIKEN cDNA 1700025M24 gene	ncRNA	0.000000	0.477612	
mm_45489.1	chr5	71548125	71548325	-	1	NA	NA	NA	-20	NM_030052	78174	Mm.60690	NM_030052	ENSMUSG00000049387	Cox7b2	4930503B16Rik	cytochrome c oxidase subunit VIIb2	protein-coding	0.040000	0.492537	
mm_61473.1	chr7	75612237	75612437	+	1	NA	NA	NA	156803	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.030000	0.482587	28(CTTCTTATGGCC,+,0.00)
mm_74994.1	chr8	27202450	27202650	-	1	NA	NA	NA	-3	NM_029674	76615	Mm.272794	NM_029674	ENSMUSG00000039720	Got1l1	1700083M11Rik	glutamic-oxaloacetic transaminase 1-like 1	protein-coding	0.025000	0.527363	
mm_19532.1	chr2	94332806	94333006	-	1	NA	NA	NA	-71507	NR_030431	735259		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.020000	0.497512	
mm_123127.1	chr14	56211327	56211527	-	1	NA	NA	NA	-20	NM_010374	14943	Mm.457976	NM_010374	ENSMUSG00000015441	Gzmf	CCP4|Ctla-7|Ctla7|MCSP-3	granzyme F	protein-coding	0.005000	0.517413	
mm_171681.1	chr4	5693843	5694043	-	1	NA	NA	NA	49764	NM_173426	242297	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0.010000	0.507463	-36(TCCTTTATAAGC,-,0.00),-34(CTTTATAAGCAC,+,0.00)
mm_168650.1	chr11	8605265	8605465	-	1	NA	NA	NA	59170	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.015000	0.432836	
mm_6537.1	chr1	74935481	74935681	-	1	NA	NA	NA	18	NM_001039495	241116	Mm.186404	NM_172848	ENSMUSG00000047021	Ccdc108	A230051F10|B230363K08Rik|Cfap65	coiled-coil domain containing 108	protein-coding	0.070000	0.507463	
mm_144146.1	chr18	4994878	4995078	+	1	NA	NA	NA	-51611	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.000000	0.378109	1(GTCTTTAAAGGT,-,0.00)
mm_70026.1	chr7	142576190	142576390	-	1	NA	NA	NA	857	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.015000	0.537313	
mm_141560.1	chr17	32221105	32221305	-	1	NA	NA	NA	-20715	NR_102329	100043434		NR_102329		Gm4432	-	predicted gene 4432	pseudo	0.005000	0.512438	
mm_155385.1	chrX	71816656	71816856	+	1	NA	NA	NA	-2	NM_001081356	67048	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding	0.155000	0.706468	
mm_24996.1	chr3	97162896	97163096	+	1	NA	NA	NA	4219	NM_019800	66659	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	0.015000	0.422886	
mm_90070.1	chr10	116347288	116347488	+	1	NA	NA	NA	46014	NM_029928	19263	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0.015000	0.373134	
mm_73807.1	chr8	117340098	117340298	+	1	NA	NA	NA	-8972	NM_028941	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.020000	0.482587	
mm_11057.1	chr2	27496818	27497018	+	1	NA	NA	NA	-18229	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.015000	0.462687	-61(GCCTTTAAGAGC,-,0.00),-60(CCTTTAAGAGCT,+,0.00)
mm_164588.1	chr17	26509419	26509619	-	1	NA	NA	NA	-1047	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.025000	0.517413	
mm_26255.1	chr3	142496723	142496923	+	1	NA	NA	NA	-111	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.015000	0.422886	
mm_69265.1	chr7	127895513	127895713	-	1	NA	NA	NA	4	NM_178600	27973	Mm.29703	NM_178600	ENSMUSG00000096145	Vkorc1	D7Wsu86e	vitamin K epoxide reductase complex, subunit 1	protein-coding	0.060000	0.626866	
mm_82937.1	chr9	35267666	35267866	-	1	NA	NA	NA	39	NM_175411	109229	Mm.24197	NM_175411	ENSMUSG00000050471	Fam118b	2310022O21Rik|2700018L24Rik|C030004A17Rik|Ppp4r1l	family with sequence similarity 118, member B	protein-coding	0.095000	0.706468	
mm_88783.1	chr10	80603130	80603330	+	1	NA	NA	NA	348	NM_019575	56214	Mm.273170	NM_019575	ENSMUSG00000078441	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	0.070000	0.562189	
mm_104660.1	chr11	97628810	97629010	-	1	NA	NA	NA	806	NM_175332	103551	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0.120000	0.751244	
mm_162263.1	chrY	2796125	2796325	-	1	NA	NA	NA	-34455	NM_001270516	100862398	Mm.4711	NM_001270516	ENSMUSG00000095948	Gm21708	-	predicted gene, 21708	protein-coding	0.035000	0.432836	36(ATCCATTAAAGC,-,0.00)
mm_71980.1	chr8	70594531	70594731	+	1	NA	NA	NA	150	NM_023627	71780	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.125000	0.651741	
mm_144887.1	chr18	36801769	36801969	+	1	NA	NA	NA	106	NR_027885	378472	Mm.482379	NR_027885		Vaultrc5	Gm22653|Mvg1	vault RNA component 5	ncRNA	0.045000	0.457711	
mm_72808.1	chr8	87473058	87473258	+	1	NA	NA	NA	42	NR_125722	100040294	Mm.213632	NR_033430	ENSMUSG00000097248	Gm2694	C230036H16Rik|linc1582	predicted gene 2694	ncRNA	0.135000	0.711443	
mm_89435.1	chr10	91123306	91123506	+	1	NA	NA	NA	557	NM_133668	18674	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.060000	0.671642	
mm_97657.1	chr11	79528109	79528309	+	1	NA	NA	NA	2400	NM_146023	101488212	Mm.439665	NM_146023	ENSMUSG00000070354	Gm21975	Evi2a-evi2b	predicted gene 21975	protein-coding	0.010000	0.477612	
mm_84737.1	chr9	75254664	75254864	-	1	NA	NA	NA	22750	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.015000	0.572139	
mm_117426.1	chr13	74390723	74390923	-	1	NA	NA	NA	-14257	NM_001081680	238722	Mm.461254	NM_001081680	ENSMUSG00000069184	Zfp72	Zfp74	zinc finger protein 72	protein-coding	0.035000	0.467662	
mm_130473.1	chr15	98727441	98727641	-	1	NA	NA	NA	657	NM_024169	66120	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.060000	0.577114	
mm_42808.1	chr5	121787231	121787431	+	1	NA	NA	NA	31942	NR_105998	102465624		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0.005000	0.432836	
mm_164402.1	chr16	34994873	34995073	+	1	NA	NA	NA	-27448	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.025000	0.552239	
mm_143010.1	chr17	56454867	56455067	-	1	NA	NA	NA	7254	NM_001252456	19280	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.035000	0.587065	
mm_61253.1	chr7	65861800	65862000	+	1	NA	NA	NA	-236	NM_001291184	18553	Mm.294007	NM_011048	ENSMUSG00000030513	Pcsk6	C86343|Pace4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding	0.110000	0.706468	
mm_1856.1	chr1	84839367	84839567	+	1	NA	NA	NA	-163	NM_133975	14897	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.115000	0.686567	
mm_9219.1	chr1	171234207	171234407	-	1	NA	NA	NA	42	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.055000	0.616915	
mm_85146.1	chr9	95857465	95857665	-	1	NA	NA	NA	-32	NM_019864	245000	Mm.212462	NM_019864	ENSMUSG00000032409	Atr	-	ataxia telangiectasia and Rad3 related	protein-coding	0.100000	0.651741	
mm_76802.1	chr8	104248434	104248634	-	1	NA	NA	NA	24	NR_045642	57813	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.095000	0.696517	-86(CCCTTAAGGGGC,+,0.00)
mm_21102.1	chr2	153241276	153241476	-	1	NA	NA	NA	-18	NM_018807	54711	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	0.160000	0.800995	
mm_57025.1	chr6	122282716	122282916	-	1	NA	NA	NA	17	NM_016970	50928	Mm.20434	NM_016970	ENSMUSG00000030114	Klrg1	2F1-Ag|MAFA|MAFA-L	killer cell lectin-like receptor subfamily G, member 1	protein-coding	0.005000	0.502488	
mm_145568.1	chr18	60911641	60911841	+	1	NA	NA	NA	-499	NM_001038499	545260	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	0.050000	0.686567	
mm_3015.1	chr1	133363650	133363850	+	1	NA	NA	NA	178	NM_175443	214253	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	0.060000	0.681592	
mm_32958.1	chr4	119733721	119733921	+	1	NA	NA	NA	-74876	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.140000	0.756219	
mm_93587.1	chr10	117062946	117063146	-	1	NA	NA	NA	768	NM_007636	12461	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.045000	0.502488	86(GCTTTTAAATGA,+,0.00)
mm_44239.1	chr5	5265961	5266161	-	1	NA	NA	NA	7	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.025000	0.502488	
mm_104943.1	chr11	100118738	100118938	-	1	NA	NA	NA	1739	NM_001313949	16663	Mm.4646	NM_010662	ENSMUSG00000044041	Krt13	CK13|K13|Krt-1.13|Krt1-13	keratin 13	protein-coding	0.040000	0.572139	
mm_2294.1	chr1	91458460	91458660	+	1	NA	NA	NA	768	NM_011066	18627	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.020000	0.547264	
mm_111898.1	chr12	108702193	108702393	-	1	NA	NA	NA	13	NM_001171002	70059	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	0.095000	0.671642	
mm_55137.1	chr6	51320821	51321021	-	1	NA	NA	NA	-51011	NR_029719	387166		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.005000	0.522388	
mm_138934.1	chr17	43803966	43804166	+	1	NA	NA	NA	63	NM_001286653	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.010000	0.467662	
mm_118950.1	chr14	27362710	27362910	+	1	NA	NA	NA	1421	NM_001289688	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.015000	0.432836	-32(TCTTTTATACAG,+,0.00),56(CACCATTAAAGC,-,0.00),58(CCATTAAAGCGC,+,0.00)
mm_129756.1	chr15	82371849	82372049	-	1	NA	NA	NA	8311	NM_019823	56448	Mm.474216	NM_019823	ENSMUSG00000061740	Cyp2d22	2D22	cytochrome P450, family 2, subfamily d, polypeptide 22	protein-coding	0.025000	0.577114	
mm_86648.1	chr10	17476899	17477099	+	1	NA	NA	NA	-246229	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.005000	0.482587	
mm_32871.1	chr4	118526905	118527105	+	1	NA	NA	NA	-270	NM_025572	66451	Mm.34431	NM_025572	ENSMUSG00000028536	2610528J11Rik	TEMP	RIKEN cDNA 2610528J11 gene	protein-coding	0.015000	0.517413	
mm_106038.1	chr11	116079052	116079252	-	1	NA	NA	NA	-1191	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.005000	0.592040	
mm_104856.1	chr11	99351000	99351200	-	1	NA	NA	NA	18	NM_010666	16675	Mm.440476	NM_010666	ENSMUSG00000017588	Krt27	CK-27|Krt1-c29|mIRSa3.1|stpm	keratin 27	protein-coding	0.045000	0.552239	-38(GCATATATAAAG,-,0.00)
mm_126237.1	chr15	78986993	78987193	+	1	NA	NA	NA	4037	NM_001024716	110253	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.015000	0.606965	
mm_61690.1	chr7	81057486	81057686	+	1	NA	NA	NA	-14	NM_054085	116904	Mm.475768	NM_054085	ENSMUSG00000038763	Alpk3	AW319487|D330016D04|MAK|Midori|mKIAA1330	alpha-kinase 3	protein-coding	0.075000	0.721393	
mm_60311.1	chr7	44140500	44140700	+	1	NA	NA	NA	3310	NM_008454	16615	Mm.440887	NM_008454	ENSMUSG00000038968	Klk1b16	Klk16|mGk-16	kallikrein 1-related peptidase b16	protein-coding	0.010000	0.537313	
mm_12424.1	chr2	70563303	70563503	+	1	NA	NA	NA	-46	NR_040496	68986	Mm.437697	NR_040496	ENSMUSG00000087264	Gad1os	1500002O10Rik	glutamate decarboxylase 1, opposite strand	ncRNA	0.055000	0.636816	
mm_134312.1	chr16	15885525	15885725	-	1	NA	NA	NA	-1661	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.005000	0.388060	9(AGGCCTAAAAGC,-,0.00)
mm_154881.1	chrX	20698623	20698823	+	1	NA	NA	NA	-5186	NM_145628	236733	Mm.34489	NM_145628	ENSMUSG00000031066	Usp11	6230415D12Rik|mKIAA4085	ubiquitin specific peptidase 11	protein-coding	0.015000	0.597015	
mm_57665.1	chr6	128487848	128488048	-	1	NA	NA	NA	38772	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.025000	0.522388	
mm_92999.1	chr10	86778418	86778618	-	1	NA	NA	NA	-487	NM_175331	103466	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.065000	0.611940	
mm_18307.1	chr2	53191137	53191337	-	1	NA	NA	NA	-50	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.080000	0.651741	
mm_139747.1	chr17	63533336	63533536	+	1	NA	NA	NA	-32856	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.005000	0.402985	
mm_17488.1	chr2	28583061	28583261	-	1	NA	NA	NA	118	NM_148928	70239	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0.050000	0.512438	
mm_3055.1	chr1	134063357	134063557	+	1	NA	NA	NA	15698	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.035000	0.636816	-34(CCCCATAAAGGA,-,0.00)
mm_115246.1	chr13	110395990	110396190	+	1	NA	NA	NA	1046	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.025000	0.432836	
mm_112313.1	chr12	114914983	114915183	-	1	NA	NA	NA	-401389	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.457711	
mm_134615.1	chr16	20822790	20822990	-	1	NA	NA	NA	-88379	NM_009379	21832	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.000000	0.472637	
mm_73920.1	chr8	119754154	119754354	+	1	NA	NA	NA	24162	NM_028883	74347	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.035000	0.597015	
mm_137862.1	chr17	31247229	31247429	+	1	NA	NA	NA	30027	NM_025290	22092	Mm.12743	NM_025290	ENSMUSG00000024033	Rsph1	MCA|Tsga2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding	0.025000	0.582090	
mm_117823.1	chr13	98016140	98016340	-	1	NA	NA	NA	189925	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0.040000	0.587065	
mm_167300.1	chr8	55401579	55401779	-	1	NA	NA	NA	446951	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.000000	0.447761	-34(AGGTATAAAAAG,-,0.00)
mm_166378.1	chr5	129704852	129705052	-	1	NA	NA	NA	3559	NM_028826	74222	Mm.159143	NM_028826	ENSMUSG00000034219	Sept14	1700016K13Rik	septin 14	protein-coding	0.025000	0.472637	
mm_12906.1	chr2	84826989	84827189	+	1	NA	NA	NA	68	NM_013899	30059	Mm.21826	NM_013899	ENSMUSG00000027076	Timm10	Tim13|Timm13a	translocase of inner mitochondrial membrane 10	protein-coding	0.060000	0.562189	
mm_152674.1	chr19	14960683	14960883	-	1	NA	NA	NA	-362600	NM_001302947	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.030000	0.472637	
mm_145902.1	chr18	65698165	65698365	+	1	NA	NA	NA	-3	NM_177028	319888	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0.015000	0.472637	-91(GGCTTGTTAAGG,-,0.00)
mm_137920.1	chr17	32452651	32452851	+	1	NA	NA	NA	28	NM_177307	320997	Mm.130900	NM_177307	ENSMUSG00000061126	Cyp4f39	4732474A20Rik	cytochrome P450, family 4, subfamily f, polypeptide 39	protein-coding	0.070000	0.651741	-32(AGGTTTAAAGGG,-,0.00)
mm_68416.1	chr7	109672139	109672339	-	1	NA	NA	NA	-31498	NM_020616	57373	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	0.030000	0.552239	
mm_142044.1	chr17	35503830	35504030	-	1	NA	NA	NA	-2102	NM_013633	18999	Mm.17031	NM_013633	ENSMUSG00000024406	Pou5f1	NF-A3|Oct-3|Oct-3/4|Oct-4|Oct3|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4	POU domain, class 5, transcription factor 1	protein-coding	0.005000	0.557214	
mm_7540.1	chr1	124490226	124490426	-	1	NA	NA	NA	-444767	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.442786	
mm_52684.1	chr6	118011372	118011572	+	1	NA	NA	NA	-65	NM_001316749	70727	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	0.190000	0.840796	
mm_46374.1	chr5	103691965	103692165	-	1	NA	NA	NA	-36333	NM_001163550	74218	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.020000	0.358209	31(GTCCTTTAATGG,-,0.00),33(CCTTTAATGGTG,+,0.00)
mm_90084.1	chr10	116913911	116914111	+	1	NA	NA	NA	-17132	NM_001033333	237558	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	0.025000	0.467662	
mm_32395.1	chr4	106733791	106733991	+	1	NA	NA	NA	-24	NM_146149	230579	Mm.222956	NM_146149	ENSMUSG00000034871	Fam151a	2010309H15Rik	family with sequence simliarity 151, member A	protein-coding	0.005000	0.577114	
mm_61147.1	chr7	57591098	57591298	+	1	NA	NA	NA	25	NM_008071	14402	Mm.8004	NM_008071	ENSMUSG00000033676	Gabrb3	A230092K12Rik|AW049585|Cp1|Gabrb-3|beta3	gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	protein-coding	0.125000	0.810945	
mm_116808.1	chr13	54219857	54220057	-	1	NA	NA	NA	27828	NM_008286	15466	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	-	histamine receptor H2	protein-coding	0.010000	0.517413	
mm_26273.1	chr3	142504733	142504933	+	1	NA	NA	NA	7899	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.015000	0.402985	
mm_110085.1	chr12	24767504	24767704	-	1	NA	NA	NA	59350	NM_009104	20135	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0.015000	0.562189	
mm_125296.1	chr15	37007506	37007706	+	1	NA	NA	NA	-204	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.110000	0.716418	
mm_172390.1	chr7	136810745	136810945	+	1	NA	NA	NA	-83766	NM_008598	17314	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding	0.020000	0.512438	
mm_100938.1	chr11	6522684	6522884	-	1	NA	NA	NA	-1826	NM_178440	246177	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0.000000	0.447761	-99(GCTTAAAAGGAA,+,0.00)
mm_121826.1	chr14	20479849	20480049	-	1	NA	NA	NA	184	NM_001110794	11750	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	0.080000	0.646766	
mm_158632.1	chrX	153696073	153696273	-	1	NA	NA	NA	107	NM_175429	207474	Mm.271572	NM_175429	ENSMUSG00000041633	Kctd12b	9530071H11Rik|B430319H24Rik	potassium channel tetramerisation domain containing 12b	protein-coding	0.010000	0.477612	
mm_73815.1	chr8	117401277	117401477	+	1	NA	NA	NA	-51646	NR_106045	102466801		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.010000	0.477612	3(TTCTTTATAAGA,-,0.00)
mm_152540.1	chr19	11330280	11330480	-	1	NA	NA	NA	4315	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.005000	0.358209	
mm_22863.1	chr3	28728735	28728935	+	1	NA	NA	NA	30932	NM_031197	20526	Mm.18443	NM_031197	ENSMUSG00000027690	Slc2a2	AI266973|Glut-2|Glut2	solute carrier family 2 (facilitated glucose transporter), member 2	protein-coding	0.005000	0.467662	
mm_105823.1	chr11	113063104	113063304	-	1	NA	NA	NA	138634	NR_015556	72386	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.020000	0.587065	
mm_44687.1	chr5	30147921	30148121	-	1	NA	NA	NA	6959	NM_178878	97212	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	0.015000	0.348259	
mm_86381.1	chr9	123851784	123851984	-	1	NA	NA	NA	15	NM_001110253	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.090000	0.631841	
mm_43741.1	chr5	139912485	139912685	+	1	NA	NA	NA	4642	NM_175522	243312	Mm.237102	NM_175522	ENSMUSG00000048988	Elfn1	A930017N06Rik|AI197272|Ppp1r28	leucine rich repeat and fibronectin type III, extracellular 1	protein-coding	0.150000	0.761194	
mm_28838.1	chr3	96580095	96580295	-	1	NA	NA	NA	-13394	NR_040409	100038464	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	ENSMUSG00000074398|OTTMUSG00000021867	predicted gene 15441	ncRNA	0.020000	0.482587	
mm_86386.1	chr9	123931598	123931798	-	1	NA	NA	NA	36994	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.000000	0.407960	
mm_43746.1	chr5	140331819	140332019	+	1	NA	NA	NA	-3	NM_008637	17766	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0.100000	0.661692	
mm_147797.1	chr18	61657864	61658064	-	1	NA	NA	NA	7574	NR_045402	328968	Mm.392305	NR_045402		Carmn	Carmen|E330013P06|Gm16908|Mir143hg	cardiac mesoderm enhancer-associated non-coding RNA	ncRNA	0.005000	0.457711	
mm_159495.1	chr4	43000333	43000533	-	1	NA	NA	NA	74	NM_009503	269523	Mm.245976	NM_009503	ENSMUSG00000028452	Vcp	3110001E05|CDC48|p97|p97/VCP	valosin containing protein	protein-coding	0.105000	0.651741	
mm_132797.1	chr16	45093939	45094139	+	1	NA	NA	NA	-14	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.020000	0.402985	
mm_124956.1	chr15	12923910	12924110	+	1	NA	NA	NA	99195	NM_001130149	14000	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	0.020000	0.482587	
mm_98434.1	chr11	94937825	94938025	+	1	NA	NA	NA	1701	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.035000	0.552239	
mm_127341.1	chr15	100599659	100599859	+	1	NA	NA	NA	225	NM_001304965	19009	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0.090000	0.711443	
mm_39824.1	chr5	30797796	30797996	+	1	NA	NA	NA	-16745	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.010000	0.537313	
mm_153470.1	chr19	41273064	41273264	-	1	NA	NA	NA	-9160	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.005000	0.432836	18(GGCCATTAAAGA,-,0.00)
mm_156959.1	chrX	169989287	169989487	+	1	NA	NA	NA	-10470	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.020000	0.507463	
mm_77853.1	chr9	5309569	5309769	+	1	NA	NA	NA	820	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.000000	0.378109	
mm_56749.1	chr6	115994743	115994943	-	1	NA	NA	NA	162	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.195000	0.860697	
mm_13402.1	chr2	103971461	103971661	+	1	NA	NA	NA	1274	NM_001142335	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.015000	0.457711	15(GCCCTTTTAAGA,-,0.00),16(CCCTTTTAAGAG,-,0.00),17(CCTTTTAAGAGT,+,0.00),18(CTTTTAAGAGTC,+,0.00)
mm_93350.1	chr10	100590320	100590520	-	1	NA	NA	NA	-1161	NM_175128	68281	Mm.268474	NM_175128	ENSMUSG00000046567	4930430F08Rik	4930571E09Rik|A730088G13Rik|AW551239|C430008C19Rik	RIKEN cDNA 4930430F08 gene	protein-coding	0.005000	0.373134	73(GACTTTAAAAGG,-,0.00),74(ACTTTAAAAGGC,+,0.00)
mm_162594.1	chr1	181446167	181446367	-	1	NA	NA	NA	65184	NM_207280	403180	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	0.005000	0.368159	
mm_112125.1	chr12	112917543	112917743	-	1	NA	NA	NA	2898	NR_105906	102465567		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0.025000	0.592040	-23(GCCTTTAAGGAA,+,0.00)
mm_134280.1	chr16	14202006	14202206	-	1	NA	NA	NA	38831	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.025000	0.572139	
mm_15624.1	chr2	162661152	162661352	+	1	NA	NA	NA	89	NR_033569	77288	Mm.376571	NR_033569		9430021M05Rik	-	RIKEN cDNA 9430021M05 gene	ncRNA	0.170000	0.781095	
mm_130393.1	chr15	97910532	97910732	-	1	NA	NA	NA	-2336	NM_009504	22337	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D receptor	protein-coding	0.010000	0.422886	
mm_64139.1	chr7	141196754	141196954	+	1	NA	NA	NA	1711	NM_153777	70552	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	0.005000	0.462687	
mm_132073.1	chr16	30065548	30065748	+	1	NA	NA	NA	291	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hairy and enhancer of split 1 (Drosophila)	protein-coding	0.035000	0.472637	
mm_117803.1	chr13	97435840	97436040	-	1	NA	NA	NA	970	NR_110432	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.045000	0.532338	
mm_162650.1	chr1	195241552	195241752	+	1	NA	NA	NA	-64937	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0.090000	0.587065	
mm_33944.1	chr4	137146600	137146800	+	1	NA	NA	NA	18366	NR_040443	100503595	Mm.421314	NR_040443	ENSMUSG00000085833	Gm13003	OTTMUSG00000009822	predicted gene 13003	ncRNA	0.010000	0.557214	-89(ACTTATTAAAGG,-,0.00)
mm_156895.1	chrX	167201502	167201702	+	1	NA	NA	NA	7616	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.005000	0.398010	
mm_138697.1	chr17	35980351	35980551	+	1	NA	NA	NA	496	NM_008136	14670	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	0.065000	0.671642	
mm_87579.1	chr10	56389694	56389894	+	1	NA	NA	NA	12494	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.010000	0.283582	
mm_119954.1	chr14	55055762	55055962	+	1	NA	NA	NA	-17229	NR_004444	432855	Mm.490799	NR_004444	ENSMUSG00000093452	Zfhx2os	Zfhx2as	zinc finger homeobox 2, opposite strand	ncRNA	0.015000	0.452736	
mm_22277.1	chr2	179806592	179806792	-	1	NA	NA	NA	169954	NM_001081092	228980	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	0.005000	0.507463	
mm_43026.1	chr5	123909029	123909229	+	1	NA	NA	NA	1854	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.020000	0.577114	
mm_37938.1	chr4	132922529	132922729	-	1	NA	NA	NA	-78	NM_001163792	230789	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0.160000	0.736318	
mm_54836.1	chr6	42586175	42586375	-	1	NA	NA	NA	11097	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.442786	
mm_159551.1	chr4	102587474	102587674	+	1	NA	NA	NA	16	NM_001177982	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.005000	0.462687	
mm_122708.1	chr14	52197142	52197342	-	1	NA	NA	NA	-3	NM_033618	114741	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	0.125000	0.641791	
mm_101667.1	chr11	36831603	36831803	-	1	NA	NA	NA	112538	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.030000	0.492537	
mm_80504.1	chr9	78615641	78615841	+	1	NA	NA	NA	195	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.060000	0.597015	10(GCTTTTAGGCGC,+,0.00)
mm_34490.1	chr4	148591414	148591614	+	1	NA	NA	NA	1	NM_009272	20810	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	0.130000	0.761194	
mm_107220.1	chr12	26469844	26470044	+	1	NA	NA	NA	729	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.045000	0.601990	
mm_78295.1	chr9	22408914	22409114	+	1	NA	NA	NA	-2563	NM_026739	68283	Mm.280669	NM_026739	ENSMUSG00000036411	9530077C05Rik	1110003N12Rik|Kiaa0895|mKIAA0895	RIKEN cDNA 9530077C05 gene	protein-coding	0.015000	0.487562	
mm_49152.1	chr6	12019733	12019933	+	1	NA	NA	NA	89747	NR_003631	625347	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo	0.000000	0.402985	
mm_117652.1	chr13	93093666	93093866	-	1	NA	NA	NA	-1067	NR_046182	408254	Mm.474857	NR_046182		A630019I02Rik	-	RIKEN cDNA A630019I02 gene	ncRNA	0.005000	0.477612	12(GAGCTTATAAAG,-,0.00),14(GCTTATAAAGCT,+,0.00)
mm_130986.1	chr15	103366453	103366653	-	1	NA	NA	NA	238	NM_010577	16402	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0.100000	0.711443	
mm_163900.1	chr14	29479336	29479536	+	1	NA	NA	NA	242428	NM_009785	12294	Mm.386754	NM_009785	ENSMUSG00000021991	Cacna2d3	Cacnad3|alapha2delta3	calcium channel, voltage-dependent, alpha2/delta subunit 3	protein-coding	0.005000	0.432836	
mm_95283.1	chr11	45890597	45890797	+	1	NA	NA	NA	38733	NM_001045520	216705	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.075000	0.542289	
mm_37836.1	chr4	132049007	132049207	-	1	NA	NA	NA	-29	NM_001128606	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.165000	0.776119	
mm_20111.1	chr2	121140527	121140727	-	1	NA	NA	NA	71	NM_177846	329504	Mm.219449	NM_177846	ENSMUSG00000074890	Lcmt2	D330024M17|Tyw4	leucine carboxyl methyltransferase 2	protein-coding	0.090000	0.616915	
mm_75413.1	chr8	46502746	46502946	-	1	NA	NA	NA	11880	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.045000	0.587065	
mm_164292.1	chr15	103895823	103896023	-	1	NA	NA	NA	3377	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.005000	0.313433	
mm_62129.1	chr7	96958034	96958234	+	1	NA	NA	NA	6607	NM_153591	244141	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.000000	0.402985	
mm_58893.1	chr7	17093597	17093797	+	1	NA	NA	NA	19657	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.030000	0.522388	
mm_160803.1	chr11	6395045	6395245	+	1	NA	NA	NA	20	NM_028601	52915	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.025000	0.587065	
mm_89729.1	chr10	98945582	98945782	+	1	NA	NA	NA	30530	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.005000	0.417910	
mm_36127.1	chr4	58987006	58987206	-	1	NA	NA	NA	-28	NM_025968	67103	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	0.035000	0.562189	
mm_43202.1	chr5	129096621	129096821	+	1	NA	NA	NA	-29	NM_001081342	243277	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding	0.030000	0.562189	
mm_97995.1	chr11	84129629	84129829	+	1	NA	NA	NA	-161	NM_172562	217031	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	0.120000	0.711443	
mm_76693.1	chr8	94178684	94178884	-	1	NA	NA	NA	-305	NM_013602	17748	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.015000	0.492537	-17(TTTTATAAAGAC,+,0.00)
mm_164898.1	chr18	65970130	65970330	-	1	NA	NA	NA	-52	NM_145493	225644	Mm.192285	NM_145493	ENSMUSG00000024519	Cplx4	A930004D23Rik|CPXIV|Gm957	complexin 4	protein-coding	0.040000	0.507463	
mm_9508.1	chr1	173738093	173738293	-	1	NA	NA	NA	3616	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.000000	0.333333	
mm_145796.1	chr18	65247088	65247288	+	1	NA	NA	NA	-1673	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.020000	0.552239	
mm_108051.1	chr12	73910002	73910202	+	1	NA	NA	NA	2235	NM_001313919	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.000000	0.343284	-46(CCTTAAATGAGC,+,0.00)
mm_28637.1	chr3	95217860	95218060	-	1	NA	NA	NA	-18	NM_029885	213054	Mm.224820	NM_029885	ENSMUSG00000038766	Gabpb2	1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1	GA repeat binding protein, beta 2	protein-coding	0.085000	0.582090	
mm_19009.1	chr2	76894637	76894837	-	1	NA	NA	NA	87810	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.015000	0.437811	
mm_101486.1	chr11	31369973	31370173	-	1	NA	NA	NA	-12	NM_011491	20856	Mm.32506	NM_011491	ENSMUSG00000020303	Stc2	AW125853|Stc2l|mustc2	stanniocalcin 2	protein-coding	0.075000	0.626866	
mm_93471.1	chr10	111164554	111164754	-	1	NA	NA	NA	-148	NM_001003717	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.090000	0.736318	
mm_40244.1	chr5	38039162	38039362	+	1	NA	NA	NA	32	NM_026959	71116	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0.090000	0.626866	
mm_88865.1	chr10	80940121	80940321	+	1	NA	NA	NA	10130	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.025000	0.517413	
mm_66321.1	chr7	41560724	41560924	-	1	NA	NA	NA	-60934	NM_001033530	101835	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	0.025000	0.582090	
mm_87670.1	chr10	58812385	58812585	+	1	NA	NA	NA	-874	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding	0.100000	0.666667	
mm_43229.1	chr5	129908466	129908666	+	1	NA	NA	NA	26	NM_026916	69034	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	0.110000	0.706468	
mm_12113.1	chr2	61593334	61593534	+	1	NA	NA	NA	337	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.120000	0.701493	
mm_28154.1	chr3	87748488	87748688	-	1	NA	NA	NA	35	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding	0.045000	0.646766	
mm_108210.1	chr12	76920651	76920851	+	1	NA	NA	NA	41497	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.020000	0.502488	
mm_123166.1	chr14	57306123	57306323	-	1	NA	NA	NA	92260	NM_030004	68631	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.000000	0.452736	
mm_84176.1	chr9	59949601	59949801	-	1	NA	NA	NA	378	NM_013708	23958	Mm.103641	NM_013708	ENSMUSG00000032292	Nr2e3	A930035N01Rik|PNR|RNR|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding	0.010000	0.542289	
mm_152116.1	chr19	6980351	6980551	-	1	NA	NA	NA	10	NM_001166368	14227	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	13kDa|FKBP-2|mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0.095000	0.696517	
mm_110858.1	chr12	73409466	73409666	-	1	NA	NA	NA	-3	NR_046013	380765	Mm.490476	NR_046013		D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0.005000	0.512438	
mm_80842.1	chr9	98032793	98032993	+	1	NA	NA	NA	274	NM_022319	64085	Mm.440903	NM_022319	ENSMUSG00000032452	Clstn2	2900042C18Rik|AI448973|CSTN2|Cs2|Cst-2|mKIAA4134	calsyntenin 2	protein-coding	0.100000	0.716418	
mm_129908.1	chr15	84090558	84090758	-	1	NA	NA	NA	15096	NM_013873	29859	Mm.248796	NM_013873	ENSMUSG00000018865	Sult4a1	2400007A17Rik|AI853543|BR-STL-1|ST4A1|Sultx3	sulfotransferase family 4A, member 1	protein-coding	0.020000	0.532338	
mm_65847.1	chr7	29248422	29248622	-	1	NA	NA	NA	-55	NM_028179	72275	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0.030000	0.606965	
mm_96358.1	chr11	67052616	67052816	+	1	NA	NA	NA	46	NM_001040026	52892	Mm.129731	NM_001040026	ENSMUSG00000069844	Sco1	2610001C07Rik|D11Bwg1310e	SCO1 cytochrome c oxidase assembly protein	protein-coding	0.095000	0.651741	
mm_143836.1	chr17	84115271	84115471	-	1	NA	NA	NA	36711	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.030000	0.587065	
mm_136927.1	chr17	13874389	13874589	+	1	NA	NA	NA	-73884	NM_001122977	635895	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.000000	0.537313	
mm_16296.1	chr2	174285208	174285408	+	1	NA	NA	NA	988	NM_022000	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.075000	0.691542	
mm_117488.1	chr13	78183061	78183261	-	1	NA	NA	NA	13288	NM_001347538	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.015000	0.472637	
mm_53758.1	chr6	145615939	145616139	+	1	NA	NA	NA	76	NM_009449	22147	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0.070000	0.631841	
mm_112711.1	chr13	19177818	19178018	+	1	NA	NA	NA	217895	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.477612	
mm_127740.1	chr15	103299271	103299471	+	1	NA	NA	NA	11067	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.000000	0.517413	
mm_56795.1	chr6	116647767	116647967	-	1	NA	NA	NA	-1820	NR_106010	102466793		NR_106010	ENSMUSG00000098334	Mir7043	Gm27776|mmu-mir-7043	microRNA 7043	ncRNA	0.035000	0.626866	
mm_102104.1	chr11	52997307	52997507	-	1	NA	NA	NA	122649	NR_046047	790909	Mm.404626	NR_046047	ENSMUSG00000087668	Gm11186	OTTMUSG00000000039	predicted gene 11186	ncRNA	0.015000	0.477612	
mm_13223.1	chr2	97467391	97467591	+	1	NA	NA	NA	-166	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.050000	0.552239	
mm_165809.1	chr3	145160056	145160256	+	1	NA	NA	NA	41556	NM_025714	52184	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	0.020000	0.472637	
mm_100362.1	chr11	118490019	118490219	+	1	NA	NA	NA	13159	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.020000	0.482587	
mm_114061.1	chr13	54371430	54371630	+	1	NA	NA	NA	181	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.090000	0.741294	
mm_72299.1	chr8	75770803	75771003	+	1	NA	NA	NA	322209	NM_001164235	71831	Mm.443238	NM_027944	ENSMUSG00000031620	1700007B14Rik	-	RIKEN cDNA 1700007B14 gene	protein-coding	0.000000	0.263682	71(CTTTTTATATTC,+,0.00)
mm_32865.1	chr4	118428706	118428906	+	1	NA	NA	NA	713	NM_019422	54325	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	0.015000	0.517413	
mm_153480.1	chr19	41276730	41276930	-	1	NA	NA	NA	-12826	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.005000	0.422886	
mm_57578.1	chr6	127149544	127149744	-	1	NA	NA	NA	18	NR_040273	77558	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.040000	0.626866	
mm_109612.1	chr12	112731114	112731314	+	1	NA	NA	NA	-2108	NR_105905	102466989		NR_105905	ENSMUSG00000099165	Mir6940	Gm27655|mmu-mir-6940	microRNA 6940	ncRNA	0.020000	0.597015	
mm_91006.1	chr10	14545561	14545761	-	1	NA	NA	NA	-625	NM_001002268	215798	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.075000	0.631841	
mm_72579.1	chr8	84200768	84200968	+	1	NA	NA	NA	-7650	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.175000	0.815920	-34(AGGTTTTAAAGG,-,0.00),-33(GGTTTTAAAGGC,-,0.00),-32(GTTTTAAAGGCG,+,0.00)
mm_34545.1	chr4	149539771	149539971	+	1	NA	NA	NA	2008	NR_049189	100885828		NR_049189	ENSMUSG00000093403	Mir5616	Gm25191|mir-5616|mmu-mir-5616	microRNA 5616	ncRNA	0.020000	0.562189	
mm_1950.1	chr1	86356310	86356510	+	1	NA	NA	NA	-83	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.005000	0.437811	
mm_41035.1	chr5	86071645	86071845	+	1	NA	NA	NA	-1	NM_019992	56792	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.015000	0.467662	
mm_13571.1	chr2	112284486	112284686	+	1	NA	NA	NA	-102	NM_133648	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.040000	0.547264	-100(GCCTTTTAAGAG,-,0.00),-99(CCTTTTAAGAGA,+,0.00),-98(CTTTTAAGAGAA,+,0.00)
mm_75280.1	chr8	41016208	41016408	-	1	NA	NA	NA	-1160	NR_015457	78849	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	0.020000	0.512438	
mm_5242.1	chr1	16294795	16294995	-	1	NA	NA	NA	189013	NM_133832	98711	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.030000	0.368159	53(GCTTTAAAGCCG,+,0.00)
mm_128960.1	chr15	74799795	74799995	-	1	NA	NA	NA	73	NM_029627	76486	Mm.273319	NM_029627	ENSMUSG00000044678	Ly6k	2410015A16Rik|3110035B01Rik|mLy-6K	lymphocyte antigen 6 complex, locus K	protein-coding	0.065000	0.636816	
mm_135407.1	chr16	44746215	44746415	-	1	NA	NA	NA	48	NM_001159329	66067	Mm.34520	NM_025332	ENSMUSG00000022668	Gtpbp8	0610037H22Rik	GTP-binding protein 8 (putative)	protein-coding	0.050000	0.572139	
mm_25756.1	chr3	123447037	123447237	+	1	NA	NA	NA	224	NM_008939	19142	Mm.9431	NM_008939	ENSMUSG00000027978	Prss12	Bssp-3|motopsin	protease, serine 12 neurotrypsin (motopsin)	protein-coding	0.115000	0.746269	
mm_28184.1	chr3	88027383	88027583	-	1	NA	NA	NA	28	NM_022031	73940	Mm.294467	NM_022031	ENSMUSG00000004894	Hapln2	4930401E20Rik|Bral1	hyaluronan and proteoglycan link protein 2	protein-coding	0.000000	0.497512	68(GGCCATATATAG,-,0.00),70(CCATATATAGCC,+,0.00)
mm_123511.1	chr14	66236271	66236471	-	1	NA	NA	NA	-22819	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.005000	0.378109	
mm_142525.1	chr17	46407411	46407611	-	1	NA	NA	NA	-21431	NM_053250	114570	Mm.25168	NM_053250	ENSMUSG00000023968	Crip3	TLP|TLP-A|TLP-B|Tlmp	cysteine-rich protein 3	protein-coding	0.000000	0.467662	
mm_72900.1	chr8	90876473	90876673	+	1	NA	NA	NA	47738	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.035000	0.631841	
mm_108698.1	chr12	86947356	86947556	+	1	NA	NA	NA	113	NM_001289432	217732	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.080000	0.676617	
mm_50136.1	chr6	41542861	41543061	+	1	NA	NA	NA	21185	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.527363	
mm_165316.1	chr2	103566186	103566386	+	1	NA	NA	NA	-24	NM_178890	99382	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.095000	0.651741	
mm_153724.1	chr19	44407461	44407661	-	1	NA	NA	NA	148	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.055000	0.587065	-89(GCCGATAAAAGG,-,0.00),-33(CCCTTTAAAATC,+,0.00),-32(CCTTTAAAATCC,+,0.00)
mm_6266.1	chr1	69547784	69547984	-	1	NA	NA	NA	138076	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.000000	0.318408	44(GCCTTAATAGGT,+,0.00)
mm_155412.1	chrX	73483535	73483735	+	1	NA	NA	NA	34	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.055000	0.656716	
mm_156944.1	chrX	169979012	169979212	+	1	NA	NA	NA	-195	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.020000	0.368159	-90(GTTTCTAAAAGC,-,0.00)
mm_137512.1	chr17	27057248	27057448	+	1	NA	NA	NA	44	NM_080553	16440	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0.095000	0.731343	
mm_72064.1	chr8	71469142	71469342	+	1	NA	NA	NA	48	NR_122114	66498	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	0.175000	0.771144	
mm_72724.1	chr8	85057145	85057345	+	1	NA	NA	NA	-2874	NM_026791	68628	Mm.374815	NM_026791	ENSMUSG00000008167	Fbxw9	1110017H11Rik|Fbw9	F-box and WD-40 domain protein 9	protein-coding	0.005000	0.348259	
mm_100196.1	chr11	116752560	116752760	+	1	NA	NA	NA	493	NR_003364	193217	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	0.010000	0.447761	
mm_86462.1	chr10	4387093	4387293	+	1	NA	NA	NA	915	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.120000	0.756219	
mm_44418.1	chr5	18360329	18360529	-	1	NA	NA	NA	-16	NM_010305	14677	Mm.254629	NM_010305	ENSMUSG00000057614	Gnai1	AU046200|Gialpha1|Gnai-1	guanine nucleotide binding protein (G protein), alpha inhibiting 1	protein-coding	0.215000	0.830846	
mm_159169.1	chr2	93462830	93463030	-	1	NA	NA	NA	20	NM_001271431	12521	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.040000	0.646766	
mm_84519.1	chr9	67043682	67043882	-	1	NA	NA	NA	89	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.100000	0.706468	
mm_170447.1	chr18	83700785	83700985	+	1	NA	NA	NA	-375001	NR_045361	70960	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0.030000	0.482587	
mm_83778.1	chr9	52141639	52141839	-	1	NA	NA	NA	26116	NR_105750	102465150		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	0.015000	0.442786	-51(CTCTTTAAAAGT,-,0.00),-50(TCTTTAAAAGTA,+,0.00),85(GTGCATAAAAGG,-,0.00)
mm_127081.1	chr15	97471644	97471844	+	1	NA	NA	NA	-224457	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.005000	0.547264	
mm_94017.1	chr10	127661560	127661760	-	1	NA	NA	NA	5043	NM_001122895	17937	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0.030000	0.616915	
mm_123990.1	chr14	75760867	75761067	-	1	NA	NA	NA	-6474	NM_177381	338337	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0.005000	0.298507	
mm_144792.1	chr18	35964916	35965116	+	1	NA	NA	NA	186	NR_110349	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.060000	0.696517	
mm_10396.1	chr2	13574004	13574204	+	1	NA	NA	NA	-207	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.020000	0.577114	
mm_17475.1	chr2	28560497	28560697	-	1	NA	NA	NA	2806	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.025000	0.542289	
mm_87864.1	chr10	61297634	61297834	+	1	NA	NA	NA	-102	NM_011073	18646	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	0.020000	0.577114	51(CATTTTAAAAGC,-,0.00)
mm_162899.1	chr10	114301886	114302086	-	1	NA	NA	NA	499384	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	0.010000	0.368159	
mm_65622.1	chr7	27541122	27541322	-	1	NA	NA	NA	11996	NM_011116	18807	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.020000	0.582090	
mm_55258.1	chr6	53452434	53452634	-	1	NA	NA	NA	-120840	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.010000	0.487562	
mm_53103.1	chr6	125067828	125068028	+	1	NA	NA	NA	8	NM_001163269	381810	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0.020000	0.611940	
mm_46129.1	chr5	92505409	92505609	-	1	NA	NA	NA	148	NM_007644	12492	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.110000	0.701493	
mm_28427.1	chr3	90464535	90464735	-	1	NA	NA	NA	1231	NM_008727	18160	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.035000	0.587065	-66(CCTCTTAGAGTC,+,0.00)
mm_157364.1	chrX	37191026	37191226	-	1	NA	NA	NA	-96	NM_153503	69942	Mm.307182	NM_153503	ENSMUSG00000036537	Rnf113a1	2810428C21Rik|Rnf113a	ring finger protein 113A1	protein-coding	0.095000	0.671642	
mm_165827.1	chr3	151386277	151386477	+	1	NA	NA	NA	-51505	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.005000	0.527363	
mm_96487.1	chr11	67687036	67687236	+	1	NA	NA	NA	-8190	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.015000	0.378109	
mm_39095.1	chr4	154898955	154899155	-	1	NA	NA	NA	-12	NM_025582	66469	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0.045000	0.626866	
mm_31587.1	chr4	57845129	57845329	+	1	NA	NA	NA	-19	NM_009649	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.040000	0.562189	-67(GGCCTTTTAGGG,-,0.00),-65(CCTTTTAGGGAA,+,0.00)
mm_144226.1	chr18	9958090	9958290	+	1	NA	NA	NA	10	NM_153552	225160	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	0.100000	0.626866	
mm_53348.1	chr6	129350143	129350343	+	1	NA	NA	NA	-1	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.000000	0.343284	
mm_11510.1	chr2	32572249	32572449	+	1	NA	NA	NA	1491	NM_010073	13481	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0.040000	0.597015	
mm_77426.1	chr8	121083861	121084061	-	1	NA	NA	NA	-425	NM_010426	15227	Mm.33897	NM_010426	ENSMUSG00000042812	Foxf1	AI450827|FREAC1|Foxf1a|Freac-1|HFH-8|Hfh8	forkhead box F1	protein-coding	0.125000	0.781095	
mm_142357.1	chr17	43649608	43649808	-	1	NA	NA	NA	17307	NM_028711	74011	Mm.288697	NM_028711	ENSMUSG00000023912	Slc25a27	3632410G24Rik|9430092A03Rik|D530043E16Rik|Ucp4	solute carrier family 25, member 27	protein-coding	0.030000	0.457711	
mm_48211.1	chr5	137608839	137609039	-	1	NA	NA	NA	2465	NM_008788	18542	Mm.262345	NM_008788	ENSMUSG00000029718	Pcolce	Astt-2|Astt2|P14|PCPE-1	procollagen C-endopeptidase enhancer protein	protein-coding	0.060000	0.626866	
mm_151190.1	chr19	53460532	53460732	+	1	NA	NA	NA	4164	NR_028427	381232	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|ENSMUSG00000074788|Gm10758	myocardial infarction associated transcript 1	ncRNA	0.010000	0.437811	
mm_79229.1	chr9	50494043	50494243	+	1	NA	NA	NA	-382	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.015000	0.467662	
mm_132177.1	chr16	32388679	32388879	+	1	NA	NA	NA	-11727	NM_001160402	277203	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0.005000	0.348259	
mm_101871.1	chr11	48891896	48892096	-	1	NA	NA	NA	10156	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.000000	0.353234	
mm_93063.1	chr10	88826640	88826840	-	1	NA	NA	NA	74	NM_175158	70683	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	0.085000	0.626866	
mm_8678.1	chr1	156807323	156807523	-	1	NA	NA	NA	-31600	NM_028333	72713	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	0.030000	0.417910	-7(TTTTTTAAAGCA,+,0.00)
mm_66814.1	chr7	48137488	48137688	-	1	NA	NA	NA	31397	NM_207538	404239	Mm.377927	NM_207538	ENSMUSG00000070551	Mrgprb5	Mgrg11|MrgB5	MAS-related GPR, member B5	protein-coding	0.080000	0.701493	
mm_99153.1	chr11	100580702	100580902	+	1	NA	NA	NA	4911	NM_001146318	12799	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.020000	0.502488	
mm_114731.1	chr13	83727253	83727453	+	1	NA	NA	NA	-753	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.080000	0.721393	
mm_153216.1	chr19	34747228	34747428	-	1	NA	NA	NA	-217	NM_172838	240638	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0.090000	0.691542	
mm_160555.1	chr9	49105953	49106153	+	1	NA	NA	NA	3274	NM_030709	80893	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	0.005000	0.507463	
mm_99870.1	chr11	109398947	109399147	+	1	NA	NA	NA	-26899	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.005000	0.388060	-82(CTTTTTATACAT,+,0.00),-60(CCTTATAAATAA,+,0.00)
mm_155916.1	chrX	102037155	102037355	+	1	NA	NA	NA	34052	NM_001278534	331474	Mm.23297	NM_183318	ENSMUSG00000049191	Rgag4	6430402L03Rik|Mar5|Mart5|mKIAA2001	retrotransposon gag domain containing 4	protein-coding	0.005000	0.532338	
mm_99523.1	chr11	103170395	103170595	+	1	NA	NA	NA	-643	NM_001077698	57778	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.005000	0.547264	
mm_8515.1	chr1	154726630	154726830	-	1	NA	NA	NA	-810	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.110000	0.686567	
mm_83177.1	chr9	40784048	40784248	-	1	NA	NA	NA	-17125	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.015000	0.437811	42(CCTTCTAAAAGG,-,0.00)
mm_69585.1	chr7	135704640	135704840	-	1	NA	NA	NA	11639	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.025000	0.492537	
mm_107887.1	chr12	70453043	70453243	+	1	NA	NA	NA	-11	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0.085000	0.716418	
mm_151930.1	chr19	5800142	5800342	-	1	NA	NA	NA	2430	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.025000	0.497512	
mm_93626.1	chr10	117278010	117278210	-	1	NA	NA	NA	4162	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.040000	0.522388	
mm_126651.1	chr15	84167667	84167867	+	1	NA	NA	NA	-49	NM_054088	116939	Mm.390817	NM_054088	ENSMUSG00000041653	Pnpla3	Adpn	patatin-like phospholipase domain containing 3	protein-coding	0.065000	0.641791	35(GGCTCTTTAAGC,-,0.00)
mm_65563.1	chr7	27168637	27168837	-	1	NA	NA	NA	-1935	NM_053208	112406	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0.010000	0.621891	
mm_130428.1	chr15	98145605	98145805	-	1	NA	NA	NA	-3	NM_001170710	78541	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0.115000	0.666667	
mm_149181.1	chr19	9847458	9847658	+	1	NA	NA	NA	51975	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.005000	0.442786	
mm_41080.1	chr5	87676930	87677130	+	1	NA	NA	NA	10822	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.278607	
mm_11062.1	chr2	27515124	27515324	+	1	NA	NA	NA	77	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.190000	0.781095	
mm_17962.1	chr2	37428168	37428368	-	1	NA	NA	NA	2651	NM_146253	241322	Mm.330182	NM_146253	ENSMUSG00000066798	Zbtb6	A830092L04Rik|ZID|Zfp482	zinc finger and BTB domain containing 6	protein-coding	0.005000	0.323383	
mm_34998.1	chr4	156130415	156130615	+	1	NA	NA	NA	3027	NM_001220499	100045778		NM_001220499	ENSMUSG00000110404	Rnf223	9930005F22Rik	ring finger 223	protein-coding	0.040000	0.567164	
mm_29175.1	chr3	106516177	106516377	-	1	NA	NA	NA	30237	NM_028110	72121	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.005000	0.427861	
mm_122738.1	chr14	54075529	54075729	-	1	NA	NA	NA	178300	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.497512	
mm_90748.1	chr10	5488092	5488292	-	1	NA	NA	NA	122	NM_001347711	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.020000	0.462687	
mm_113726.1	chr13	43797791	43797991	+	1	NA	NA	NA	12779	NM_001289915	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.005000	0.422886	
mm_127104.1	chr15	97831551	97831751	+	1	NA	NA	NA	116	NM_019572	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.115000	0.731343	
mm_127169.1	chr15	98789745	98789945	+	1	NA	NA	NA	-12	NM_021279	22408	Mm.1123	NM_021279	ENSMUSG00000022997	Wnt1	Int-1|Wnt-1|sw|swaying	wingless-type MMTV integration site family, member 1	protein-coding	0.065000	0.701493	
mm_148320.1	chr18	83827966	83828166	-	1	NA	NA	NA	258496	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.010000	0.532338	
mm_85409.1	chr9	103365780	103365980	-	1	NA	NA	NA	-100	NM_001134426	321022	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.090000	0.656716	
mm_155087.1	chrX	48108838	48109038	+	1	NA	NA	NA	213	NM_133213	170745	Mm.129279	NM_133213	ENSMUSG00000037005	Xpnpep2	9030008G12Rik|mAPP	X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	protein-coding	0.020000	0.542289	
mm_46838.1	chr5	113332699	113332899	-	1	NA	NA	NA	4846	NR_106089	102466821		NR_106089	ENSMUSG00000104840	Mir7230	mmu-mir-7230	microRNA 7230	ncRNA	0.020000	0.402985	
mm_126572.1	chr15	82256054	82256254	+	1	NA	NA	NA	131	NR_037698	76505	Mm.23023	NR_037697	ENSMUSG00000068099	1500009C09Rik	-	RIKEN cDNA 1500009C09 gene	ncRNA	0.015000	0.592040	
mm_48943.1	chr6	4539442	4539642	+	1	NA	NA	NA	33924	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.035000	0.517413	
mm_83584.1	chr9	48340728	48340928	-	1	NA	NA	NA	70	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.020000	0.517413	11(CTCTCTAAAAGC,-,0.00)
mm_49393.1	chr6	28261972	28262172	+	1	NA	NA	NA	-471	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.175000	0.835821	
mm_173158.1	chrX	36668091	36668291	+	1	NA	NA	NA	-22777	NM_001081956	338351	Mm.116704	NM_001081956	ENSMUSG00000059708	Akap17b	AA407619|AKAP-17B|B230333C21Rik|C230056F04Rik|PRKA17B|Sfrs17b|Srsf17b|Talia	A kinase (PRKA) anchor protein 17B	protein-coding	0.005000	0.427861	71(ACCCTTAAAAGG,-,0.00),72(CCCTTAAAAGGT,+,0.00),73(CCTTAAAAGGTT,+,0.00)
mm_145546.1	chr18	60808814	60809014	+	1	NA	NA	NA	-3162	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.015000	0.547264	
mm_122778.1	chr14	54410014	54410214	-	1	NA	NA	NA	-642	NM_001253680	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.005000	0.552239	
mm_65752.1	chr7	28561589	28561789	-	1	NA	NA	NA	-705	NR_106016	102466795		NR_106016	ENSMUSG00000098558	Mir7049	Gm27277|mmu-mir-7049	microRNA 7049	ncRNA	0.005000	0.492537	
mm_94281.1	chr11	3967634	3967834	+	1	NA	NA	NA	3759	NM_022889	64934	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	0.005000	0.402985	-45(GCCTTTAGAGAC,+,0.00)
mm_90058.1	chr10	116252806	116253006	+	1	NA	NA	NA	-48468	NM_029928	19263	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0.025000	0.557214	
mm_18414.1	chr2	60673593	60673793	-	1	NA	NA	NA	0	NM_021359	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.005000	0.422886	-52(TTCCTTATAAGG,-,0.00),-50(CCTTATAAGGTG,+,0.00),-12(GCTTTTAAACAC,+,0.00)
mm_12389.1	chr2	69897100	69897300	+	1	NA	NA	NA	-46	NM_001303033	68795	Mm.314576	NM_177783	ENSMUSG00000044308	Ubr3	1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding	0.085000	0.706468	
mm_118920.1	chr14	26894502	26894702	+	1	NA	NA	NA	-2	NM_001170748	142687	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	0.005000	0.393035	
mm_71524.1	chr8	46852573	46852773	+	1	NA	NA	NA	112928	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.020000	0.527363	
mm_154478.1	chrM	4241	4441	-	1	NA	NA	NA	NA	NA									0.010000	0.363184	
mm_55082.1	chr6	49214637	49214837	-	1	NA	NA	NA	217	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.055000	0.537313	
mm_71055.1	chr8	33731993	33732193	+	1	NA	NA	NA	26	NM_026584	68153	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	0.180000	0.800995	
mm_7961.1	chr1	133929961	133930161	-	1	NA	NA	NA	-8660	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.010000	0.467662	
mm_68514.1	chr7	111594138	111594338	-	1	NA	NA	NA	185739	NM_173739	233733	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	0.025000	0.606965	
mm_111955.1	chr12	109560001	109560201	-	1	NA	NA	NA	-3591	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.015000	0.512438	
mm_49896.1	chr6	38918968	38919168	+	1	NA	NA	NA	82	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.010000	0.502488	-98(CTCTTTATAAAG,-,0.00),-96(CTTTATAAAGAA,+,0.00),15(TCCTATAAGGGC,+,0.00)
mm_119827.1	chr14	54259171	54259371	+	1	NA	NA	NA	39	NM_134076	105501	Mm.28771	NM_134076	ENSMUSG00000040997	Abhd4	1110035H23Rik|AI429574|Abh4	abhydrolase domain containing 4	protein-coding	0.060000	0.611940	
mm_106423.1	chr11	119299031	119299231	-	1	NA	NA	NA	912	NM_138669	192170	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	0.020000	0.412935	37(GAGCATTTAAGG,-,0.00),39(GCATTTAAGGGA,+,0.00)
mm_62219.1	chr7	98455023	98455223	+	1	NA	NA	NA	14707	NM_001130693	14918	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding	0.035000	0.532338	
mm_63192.1	chr7	125603389	125603589	+	1	NA	NA	NA	60	NM_021887	60504	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.035000	0.631841	
mm_38760.1	chr4	147902896	147903096	-	1	NA	NA	NA	1702	NM_001285923	170731	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0.015000	0.482587	
mm_74123.1	chr8	123186013	123186213	+	1	NA	NA	NA	-122	NM_007876	13479	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	0.025000	0.532338	
mm_73717.1	chr8	111940651	111940851	+	1	NA	NA	NA	48	NM_026693	93739	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	0.120000	0.671642	
mm_102409.1	chr11	59182722	59182922	-	1	NA	NA	NA	4	NM_175452	118454	Mm.40016	NM_080454	ENSMUSG00000043448	Gjc2	B230382L12Rik|Cx47|Gja12	gap junction protein, gamma 2	protein-coding	0.015000	0.611940	
mm_149118.1	chr19	8970463	8970663	+	1	NA	NA	NA	3522	NM_026007	67160	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	0.005000	0.437811	
mm_109461.1	chr12	111166442	111166642	+	1	NA	NA	NA	172	NM_011632	22031	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.160000	0.825871	
mm_61866.1	chr7	89391971	89392171	+	1	NA	NA	NA	-12295	NM_008055	14366	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	0.010000	0.487562	80(GAGTTGAAAAGG,-,0.00)
mm_87854.1	chr10	61171862	61172062	+	1	NA	NA	NA	-2	NM_001017419	65971	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.005000	0.522388	
mm_97197.1	chr11	75588008	75588208	+	1	NA	NA	NA	29	NM_008850	18738	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.150000	0.771144	
mm_103597.1	chr11	78386304	78386504	-	1	NA	NA	NA	204	NM_008238	15218	Mm.4496	NM_008238	ENSMUSG00000002057	Foxn1	D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude	forkhead box N1	protein-coding	0.005000	0.597015	-32(TTTTTAATGGGC,+,0.00)
mm_156976.1	chrX	7041554	7041754	-	1	NA	NA	NA	-35	NM_183015	209091	Mm.448624	NM_183015	ENSMUSG00000051592	Ccnb3	-	cyclin B3	protein-coding	0.085000	0.582090	
mm_10451.1	chr2	14276207	14276407	+	1	NA	NA	NA	15304	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.015000	0.402985	-30(GCGTTTATAGGG,-,0.00)
mm_98100.1	chr11	86646730	86646930	+	1	NA	NA	NA	-9241	NR_106195	102465902		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	0.010000	0.432836	
mm_21712.1	chr2	164593511	164593711	-	1	NA	NA	NA	-40	NM_029325	75526	Mm.159533	NM_029325	ENSMUSG00000017733	Eppin	1700024E17Rik|Spinlw1	epididymal peptidase inhibitor	protein-coding	0.020000	0.507463	
mm_161511.1	chr15	98456288	98456488	+	1	NA	NA	NA	76	NM_146280	258277	Mm.222977	NM_146280	ENSMUSG00000032987	Olfr281	MOR160-5	olfactory receptor 281	protein-coding	0.065000	0.592040	
mm_42095.1	chr5	110343018	110343218	+	1	NA	NA	NA	31	NM_001310701	231602	Mm.55948	NM_153400	ENSMUSG00000029503	P2rx2	P2X2a|P2x2	purinergic receptor P2X, ligand-gated ion channel, 2	protein-coding	0.040000	0.631841	
mm_78196.1	chr9	21367830	21368030	+	1	NA	NA	NA	59	NM_001042709	16201	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.110000	0.676617	
mm_16560.1	chr2	3291416	3291616	-	1	NA	NA	NA	7304	NM_001290370	18108	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	0.005000	0.353234	-37(CACTATAAAAAA,-,0.00)
mm_152156.1	chr19	7241121	7241321	-	1	NA	NA	NA	1	NM_027643	70999	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	0.175000	0.726368	
mm_6713.1	chr1	82291044	82291244	-	1	NA	NA	NA	295	NM_010570	16367	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.100000	0.691542	
mm_30642.1	chr4	8822693	8822893	+	1	NA	NA	NA	132387	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.030000	0.457711	
mm_155551.1	chrX	74425367	74425567	+	1	NA	NA	NA	855	NM_001136067	16151	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	0.000000	0.517413	
mm_62582.1	chr7	105425868	105426068	+	1	NA	NA	NA	237	NM_007627	12426	Mm.44513	NM_007627	ENSMUSG00000030898	Cckbr	CCK-BR|CCK2-R|CCK2R|CCKR-2	cholecystokinin B receptor	protein-coding	0.045000	0.656716	
mm_87884.1	chr10	61720507	61720707	+	1	NA	NA	NA	-42	NM_153779	71361	Mm.286309	NM_153779	ENSMUSG00000020085	Aifm2	5430437E11Rik|Amid|D730001I10Rik|PRG3	apoptosis-inducing factor, mitochondrion-associated 2	protein-coding	0.020000	0.532338	-20(CCTTTTATCCCC,+,0.00)
mm_105067.1	chr11	100724140	100724340	-	1	NA	NA	NA	10390	NM_029307	75482	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.005000	0.398010	0(GCTCTTAAGGAC,+,0.00)
mm_22566.1	chr3	10012517	10012717	+	1	NA	NA	NA	32	NM_001272098	16592	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0.065000	0.597015	
mm_132024.1	chr16	26640978	26641178	+	1	NA	NA	NA	59373	NM_008364	16180	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	0.000000	0.343284	
mm_147161.1	chr18	36719924	36720124	-	1	NA	NA	NA	6791	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.005000	0.412935	
mm_154756.1	chrX	10717408	10717608	+	1	NA	NA	NA	143	NM_001166635	68041	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	0.060000	0.646766	
mm_116265.1	chr13	34345896	34346096	-	1	NA	NA	NA	-814	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.040000	0.572139	
mm_87153.1	chr10	36506740	36506940	+	1	NA	NA	NA	33	NM_001253356	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0.075000	0.666667	
mm_32800.1	chr4	117095966	117096166	+	1	NA	NA	NA	10	NM_008958	19207	Mm.287037	NM_008958	ENSMUSG00000028681	Ptch2	ptc2	patched 2	protein-coding	0.060000	0.641791	
mm_6795.1	chr1	84148270	84148470	-	1	NA	NA	NA	70591	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.288557	
mm_79812.1	chr9	64178308	64178508	+	1	NA	NA	NA	-889	NM_183316	330959	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	0.010000	0.422886	
mm_160244.1	chr7	104647188	104647388	-	1	NA	NA	NA	17	NM_147049	259051	Mm.223432	NM_147049	ENSMUSG00000070421	Olfr658	MOR34-5	olfactory receptor 658	protein-coding	0.050000	0.606965	
mm_104337.1	chr11	94053444	94053644	-	1	NA	NA	NA	9339	NM_001025429	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.005000	0.472637	
mm_90818.1	chr10	7919848	7920048	-	1	NA	NA	NA	36175	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.015000	0.517413	
mm_122109.1	chr14	30923660	30923860	-	1	NA	NA	NA	-173	NM_008407	16426	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	0.015000	0.567164	
mm_39788.1	chr5	30281312	30281512	+	1	NA	NA	NA	48831	NR_137634	28042	Mm.168854	NM_027652	ENSMUSG00000075703	Selenoi	4933402G07Rik|AI448296|AI452230|C79563|D5Wsu178e|Ept1|SELI|mKIAA1724	selenoprotein I	protein-coding	0.045000	0.616915	
mm_35538.1	chr4	41316601	41316801	-	1	NA	NA	NA	-1800	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.015000	0.512438	
mm_5948.1	chr1	56871262	56871462	-	1	NA	NA	NA	99972	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.005000	0.487562	
mm_150200.1	chr19	32757553	32757753	+	1	NA	NA	NA	76	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.095000	0.671642	
mm_90705.1	chr10	130379035	130379235	+	1	NA	NA	NA	15106	NM_001081448	625068	Mm.359168	NM_001081448	ENSMUSG00000070601	Vmn2r84	EG625068	vomeronasal 2, receptor 84	protein-coding	0.005000	0.298507	
mm_34910.1	chr4	155704952	155705152	+	1	NA	NA	NA	237	NM_026899	68991	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0.135000	0.661692	
mm_88479.1	chr10	77616124	77616324	+	1	NA	NA	NA	2515	NR_125903	20610	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.020000	0.557214	
mm_101504.1	chr11	32200160	32200360	-	1	NA	NA	NA	19	NM_001134458	16199	Mm.384	NM_008374	ENSMUSG00000020279	Il9r	-	interleukin 9 receptor	protein-coding	0.015000	0.552239	
mm_147278.1	chr18	39465990	39466190	-	1	NA	NA	NA	21155	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.005000	0.393035	
mm_54292.1	chr6	29272458	29272658	-	1	NA	NA	NA	-68	NM_023516	69573	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.110000	0.671642	
mm_89632.1	chr10	96398717	96398917	+	1	NA	NA	NA	172610	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.020000	0.507463	
mm_126838.1	chr15	89020309	89020509	+	1	NA	NA	NA	37415	NM_031260	83456	Mm.358791	NM_031260	ENSMUSG00000015365	Mov10l1	CHAMP|Csm	Moloney leukemia virus 10-like 1	protein-coding	0.030000	0.532338	
mm_128003.1	chr15	12824494	12824694	-	1	NA	NA	NA	63	NM_029998	77877	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	0.165000	0.726368	
mm_130852.1	chr15	101954185	101954385	-	1	NA	NA	NA	2	NM_212487	332131	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0.030000	0.597015	
mm_63245.1	chr7	126585836	126586036	+	1	NA	NA	NA	-119	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.015000	0.577114	
mm_72112.1	chr8	71629384	71629584	+	1	NA	NA	NA	1622	NR_106035	102466799		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	0.125000	0.686567	
mm_70472.1	chr8	12385645	12385845	+	1	NA	NA	NA	-26	NR_027975	434280	Mm.447484	NM_001013812	ENSMUSG00000047935	Gm5607	EG434280	predicted gene 5607	ncRNA	0.070000	0.512438	
mm_60561.1	chr7	44481243	44481443	+	1	NA	NA	NA	-3174	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.467662	
mm_79269.1	chr9	50753252	50753452	+	1	NA	NA	NA	381	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.045000	0.611940	
mm_104525.1	chr11	96075516	96075716	-	1	NA	NA	NA	15	NM_001161419	11951	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	0.040000	0.641791	
mm_140423.1	chr17	87974997	87975197	+	1	NA	NA	NA	47	NM_010830	17688	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.115000	0.676617	
mm_2532.1	chr1	106938856	106939056	+	1	NA	NA	NA	-1	NM_001199213	71869	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	0.005000	0.437811	
mm_152936.1	chr19	28680038	28680238	-	1	NA	NA	NA	-61	NM_175459	226075	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	0.130000	0.786070	
mm_40464.1	chr5	53635334	53635534	+	1	NA	NA	NA	44948	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.000000	0.238806	
mm_70566.1	chr8	13139972	13140172	+	1	NA	NA	NA	4000	NR_106032	102465645		NR_106032	ENSMUSG00000098532	Mir7065	Gm27871|mmu-mir-7065	microRNA 7065	ncRNA	0.005000	0.487562	
mm_47535.1	chr5	124248002	124248202	-	1	NA	NA	NA	1658	NM_011256	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.020000	0.542289	
mm_26153.1	chr3	138143766	138143966	+	1	NA	NA	NA	328	NM_175389	108943	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	0.115000	0.656716	
mm_63930.1	chr7	139469620	139469820	+	1	NA	NA	NA	80611	NM_001127363	212111	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.020000	0.582090	
mm_17411.1	chr2	27247089	27247289	-	1	NA	NA	NA	114	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.015000	0.587065	
mm_16894.1	chr2	13224615	13224815	-	1	NA	NA	NA	46700	NM_009105	20163	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.005000	0.487562	
mm_75406.1	chr8	46210928	46211128	-	1	NA	NA	NA	-19	NM_007450	11739	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	0.130000	0.716418	
mm_147539.1	chr18	53723087	53723287	-	1	NA	NA	NA	21360	NM_178686	225523	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	0.010000	0.527363	-53(CCCCATAAAGGA,-,0.00)
mm_33033.1	chr4	122689287	122689487	+	1	NA	NA	NA	128	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	0.005000	0.477612	
mm_62987.1	chr7	120328576	120328776	+	1	NA	NA	NA	-8	NM_177213	320631	Mm.78330	NM_177213	ENSMUSG00000054746	Abca15	4930500I12Rik	ATP-binding cassette, sub-family A (ABC1), member 15	protein-coding	0.060000	0.557214	
mm_46718.1	chr5	110471211	110471411	-	1	NA	NA	NA	-22808	NM_001142642	381668	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.000000	0.527363	-39(CCCTATATACTC,+,0.00)
mm_88059.1	chr10	67554479	67554679	+	1	NA	NA	NA	-5624	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.005000	0.422886	
mm_85445.1	chr9	104262327	104262527	-	1	NA	NA	NA	503	NM_001163026	235567	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.055000	0.651741	
mm_123084.1	chr14	55745553	55745753	-	1	NA	NA	NA	31	NM_026819	52585	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.090000	0.646766	
mm_33156.1	chr4	125504544	125504744	+	1	NA	NA	NA	-105	NR_109835	735288		NR_109835	ENSMUSG00000094403	Mir692-2	Mir692-2a|Mir692-3|Mirn692-2|Mirn692-2a|mir-692-2|mmu-mir-692-2	microRNA 692-2	ncRNA	0.015000	0.557214	
mm_101508.1	chr11	32222174	32222374	-	1	NA	NA	NA	19	NM_010117	13650	Mm.11545	NM_010117	ENSMUSG00000020282	Rhbdf1	C16ORF8|Dist|Dist1|Egfr-rs|mKIAA4242	rhomboid 5 homolog 1	protein-coding	0.150000	0.805970	
mm_161438.1	chr15	63878458	63878658	-	1	NA	NA	NA	0	NM_183194	270328	Mm.483471	NM_183194	ENSMUSG00000055827	Gsdmc3	9930109F21Rik	gasdermin C3	protein-coding	0.010000	0.477612	-32(GCCTATATAAGG,-,0.00)
mm_35476.1	chr4	40851561	40851761	-	1	NA	NA	NA	-1523	NR_039584	100628614		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.005000	0.467662	
mm_22856.1	chr3	28313207	28313407	+	1	NA	NA	NA	50093	NM_001163009	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.010000	0.417910	
mm_85864.1	chr9	110873924	110874124	-	1	NA	NA	NA	6059	NM_146260	20776	Mm.390229	NM_146260	ENSMUSG00000049555	Tmie	5131400L21Rik|Mm.87012|sr	transmembrane inner ear	protein-coding	0.050000	0.636816	
mm_85291.1	chr9	100466723	100466923	-	1	NA	NA	NA	19650	NM_001033543	213208	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.000000	0.542289	
mm_38381.1	chr4	138757394	138757594	-	1	NA	NA	NA	104	NM_012045	26971	Mm.331989	NM_012045	ENSMUSG00000028749	Pla2g2f	-	phospholipase A2, group IIF	protein-coding	0.035000	0.572139	
mm_135668.1	chr16	52407716	52407916	-	1	NA	NA	NA	45265	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.020000	0.432836	
mm_148191.1	chr18	79015087	79015287	-	1	NA	NA	NA	94204	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.000000	0.447761	-71(GCCTTTATGCCC,+,0.00)
mm_5228.1	chr1	14309843	14310043	-	1	NA	NA	NA	256	NM_001310459	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.110000	0.681592	
mm_80470.1	chr9	78167225	78167425	+	1	NA	NA	NA	-8589	NR_040401	320295	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	0.030000	0.562189	
mm_152532.1	chr19	11326755	11326955	-	1	NA	NA	NA	7840	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.000000	0.407960	
mm_78589.1	chr9	37367580	37367780	+	1	NA	NA	NA	74	NM_175189	72927	Mm.266133	NM_175189	ENSMUSG00000046240	Hepacam	2900042E01Rik|Glialcam|Hepn1	hepatocyte cell adhesion molecule	protein-coding	0.030000	0.552239	
mm_47463.1	chr5	123670915	123671115	-	1	NA	NA	NA	13346	NM_019765	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.030000	0.572139	
mm_25639.1	chr3	121070885	121071085	+	1	NA	NA	NA	100710	NM_028456	66568	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	0.020000	0.398010	
mm_141799.1	chr17	34416419	34416619	-	1	NA	NA	NA	17699	NM_001163855	407788	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	0.005000	0.447761	
mm_170893.1	chr2	27886312	27886512	+	1	NA	NA	NA	-13	NM_015734	12831	Mm.7281	NM_015734	ENSMUSG00000026837	Col5a1	AI413331	collagen, type V, alpha 1	protein-coding	0.095000	0.721393	
mm_146728.1	chr18	15151329	15151529	-	1	NA	NA	NA	17	NM_134112	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.030000	0.512438	
mm_69732.1	chr7	140873999	140874199	-	1	NA	NA	NA	7770	NM_001127351	64384	Mm.29760	NM_022433	ENSMUSG00000025486	Sirt3	2310003L23Rik|AI848213|Sir2l3	sirtuin 3	protein-coding	0.020000	0.512438	
mm_3504.1	chr1	150106958	150107158	+	1	NA	NA	NA	7027	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.025000	0.407960	
mm_32504.1	chr4	108460827	108461027	+	1	NA	NA	NA	1501	NM_175472	230594	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.030000	0.388060	
mm_13278.1	chr2	101621687	101621887	+	1	NA	NA	NA	-2961	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.020000	0.477612	
mm_147538.1	chr18	53536119	53536319	-	1	NA	NA	NA	71673	NM_001033281	225518	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	0.025000	0.547264	-32(GCACATAAAAGG,-,0.00)
mm_122603.1	chr14	51041961	51042161	-	1	NA	NA	NA	-194	NM_183032	328401	Mm.99528	NM_183032	ENSMUSG00000052382	Rnase9	ESRL|Rak1	ribonuclease, RNase A family, 9 (non-active)	protein-coding	0.015000	0.472637	
mm_27866.1	chr3	79159389	79159589	-	1	NA	NA	NA	-13614	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.005000	0.388060	
mm_105837.1	chr11	113676019	113676219	-	1	NA	NA	NA	8032	NM_138598	28081	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0.005000	0.378109	
mm_52973.1	chr6	123252997	123253197	+	1	NA	NA	NA	-9010	NM_001163161	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.000000	0.427861	73(CCTCTTATAGTG,+,0.00)
mm_160023.1	chr6	130192971	130193171	-	1	NA	NA	NA	41	NM_010651	16640	Mm.457996	NM_010651	ENSMUSG00000033024	Klra9	LY49I1|Ly49I	killer cell lectin-like receptor subfamily A, member 9	protein-coding	0.020000	0.402985	
mm_9889.1	chr1	186704447	186704647	-	1	NA	NA	NA	1442	NM_009367	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.075000	0.597015	
mm_105674.1	chr11	107470620	107470820	-	1	NA	NA	NA	0	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.125000	0.736318	
mm_128395.1	chr15	43265686	43265886	-	1	NA	NA	NA	16950	NM_008388	16341	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	0.010000	0.407960	-7(TGCTTTTAAAAC,-,0.00),-6(GCTTTTAAAACA,+,0.00)
mm_6481.1	chr1	74091233	74091433	-	1	NA	NA	NA	33114	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.020000	0.661692	
mm_164208.1	chr15	82197506	82197706	+	1	NA	NA	NA	-516	NR_029804	723897		NR_029804	ENSMUSG00000065465	Mir33	Mirn33|mir-33|mmu-mir-33	microRNA 33	ncRNA	0.025000	0.577114	
mm_141932.1	chr17	35029783	35029983	-	1	NA	NA	NA	-1867	NM_023893	78376	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	0.010000	0.577114	
mm_129059.1	chr15	75566934	75567134	-	1	NA	NA	NA	148	NM_011837	23934	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	0.095000	0.731343	
mm_72490.1	chr8	83715098	83715298	+	1	NA	NA	NA	21	NM_197982	68278	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	0.080000	0.567164	-34(GTCCTTATAAAC,-,0.00),-32(CCTTATAAACCA,+,0.00)
mm_133463.1	chr16	89169335	89169535	+	1	NA	NA	NA	-36426	NM_001163615	622935	Mm.459837	NM_001163615	ENSMUSG00000091039	Krtap20-2	1190004K03Rik|EG622935|Gm6371	keratin associated protein 20-2	protein-coding	0.000000	0.457711	-32(GTGTATAAAAGG,-,0.00)
mm_78520.1	chr9	33728058	33728258	+	1	NA	NA	NA	-314213	NR_040744	77119	Mm.367930	NR_040744	ENSMUSG00000098758	7630403G23Rik	-	RIKEN cDNA 7630403G23 gene	ncRNA	0.090000	0.542289	
mm_141688.1	chr17	33951679	33951879	-	1	NA	NA	NA	-291	NM_019420	54218	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	0.020000	0.552239	
mm_67339.1	chr7	79793156	79793356	-	1	NA	NA	NA	334	NM_008588	17292	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0.140000	0.711443	
mm_71280.1	chr8	40919715	40919915	+	1	NA	NA	NA	-6418	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.005000	0.328358	-46(AGCTCTTTAAGG,-,0.00)
mm_26263.1	chr3	142501164	142501364	+	1	NA	NA	NA	4330	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.005000	0.477612	
mm_13319.1	chr2	102686013	102686213	+	1	NA	NA	NA	-20325	NM_011393	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.020000	0.477612	
mm_141651.1	chr17	33677340	33677540	-	1	NA	NA	NA	8018	NM_001109913	76936	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	0.020000	0.373134	
mm_105113.1	chr11	101009232	101009432	-	1	NA	NA	NA	-120	NM_016920	11975	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0.035000	0.527363	
mm_60165.1	chr7	40898099	40898299	+	1	NA	NA	NA	125	NR_040329	320210	Mm.126237	NR_040329	ENSMUSG00000100600	A230077H06Rik	-	RIKEN cDNA A230077H06 gene	ncRNA	0.070000	0.676617	
mm_39650.1	chr5	24685743	24685943	+	1	NA	NA	NA	28	NM_001305264	53312	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0.090000	0.666667	
mm_127028.1	chr15	96287668	96287868	+	1	NA	NA	NA	246	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.110000	0.696517	
mm_132533.1	chr16	37868256	37868456	+	1	NA	NA	NA	-44	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.205000	0.810945	
mm_160595.1	chr9	72111150	72111350	-	1	NA	NA	NA	-49	NM_001253862	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.135000	0.716418	
mm_59077.1	chr7	19577222	19577422	+	1	NA	NA	NA	35	NM_022409	63872	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0.110000	0.676617	
mm_123736.1	chr14	70177582	70177782	-	1	NA	NA	NA	-10	NM_145978	213019	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0.025000	0.592040	
mm_170632.1	chr19	8257214	8257414	+	1	NA	NA	NA	-38414	NM_001347426	236293	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	0.005000	0.452736	
mm_152991.1	chr19	29672625	29672825	-	1	NA	NA	NA	-24305	NM_001081213	226090	Mm.267131	NM_146098	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	0.020000	0.532338	-33(GTGTATATAAGG,-,0.00)
mm_149105.1	chr19	8943462	8943662	+	1	NA	NA	NA	1642	NM_011842	23942	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	0.010000	0.417910	
mm_31749.1	chr4	63344520	63344720	+	1	NA	NA	NA	64	NM_008768	18405	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding	0.025000	0.507463	
mm_68226.1	chr7	104435626	104435826	-	1	NA	NA	NA	29467	NM_009099	20128	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.015000	0.497512	
mm_40766.1	chr5	66998529	66998729	+	1	NA	NA	NA	30213	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.025000	0.502488	
mm_97316.1	chr11	76891098	76891298	+	1	NA	NA	NA	-13347	NM_025655	66601	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.025000	0.417910	
mm_164182.1	chr15	76269908	76270108	+	1	NA	NA	NA	-169	NR_045747	100038659	Mm.448549	NR_045747		Mirt2	ENSMUSG00000075583|Gm10872|Gm24562	myocardial infraction associated transcript 2	ncRNA	0.015000	0.442786	
mm_28776.1	chr3	95950927	95951127	-	1	NA	NA	NA	21770	NM_023210	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.065000	0.552239	
mm_87457.1	chr10	51484263	51484463	+	1	NA	NA	NA	3751	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.000000	0.467662	
mm_144943.1	chr18	37768287	37768487	+	1	NA	NA	NA	2807	NM_033595	93724	Mm.247203	NM_033595	ENSMUSG00000102428	Pcdhga12	Pcdh13|pc2c	protocadherin gamma subfamily A, 12	protein-coding	0.070000	0.587065	
mm_64162.1	chr7	141392089	141392289	+	1	NA	NA	NA	29	NM_011528	21351	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0.080000	0.606965	
mm_36045.1	chr4	57278832	57279032	-	1	NA	NA	NA	22905	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.035000	0.522388	-45(TTTTTTATAGCG,+,0.00),-35(CGGTTTATAGGC,-,0.00)
mm_215.1	chr1	16688365	16688565	+	1	NA	NA	NA	9	NM_016923	17087	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0.030000	0.417910	
mm_151363.1	chr19	55917272	55917472	+	1	NA	NA	NA	22051	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.035000	0.507463	
mm_84456.1	chr9	66520299	66520499	-	1	NA	NA	NA	-5806	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.015000	0.497512	25(CACCTGAAAAGG,-,0.00)
mm_56910.1	chr6	119330500	119330700	-	1	NA	NA	NA	166	NM_172492	211187	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	0.075000	0.686567	
mm_41816.1	chr5	103804701	103804901	+	1	NA	NA	NA	50228	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.000000	0.273632	
mm_139777.1	chr17	65724408	65724608	+	1	NA	NA	NA	48244	NM_133685	106572	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.020000	0.606965	
mm_129424.1	chr15	78468355	78468555	-	1	NA	NA	NA	179	NM_027902	71753	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	0.010000	0.587065	
mm_60123.1	chr7	36697931	36698131	+	1	NA	NA	NA	-87	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.125000	0.756219	
mm_131236.1	chr16	10480051	10480251	+	1	NA	NA	NA	79	NM_001302618	12265	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.010000	0.601990	
mm_74730.1	chr8	17535569	17535769	-	1	NA	NA	NA	-284	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.080000	0.676617	
mm_10765.1	chr2	24186377	24186577	+	1	NA	NA	NA	1	NM_153511	215257	Mm.249379	NM_153511	ENSMUSG00000044103	Il1f9	Il36g	interleukin 1 family, member 9	protein-coding	0.005000	0.482587	-67(CCCCATAAAAGA,-,0.00)
mm_162096.1	chrX	37581379	37581579	+	1	NA	NA	NA	127	NM_001040089	621852	Mm.490237	NM_001040089	ENSMUSG00000095510	Rhox3f	OTTMUSG00000017155|Rhox3.6|Rhox3e	reproductive homeobox 3F	protein-coding	0.030000	0.447761	
mm_53078.1	chr6	124935650	124935850	+	1	NA	NA	NA	4362	NM_001170341	30853	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.015000	0.507463	
mm_65619.1	chr7	27535794	27535994	-	1	NA	NA	NA	12633	NM_001033315	233020	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.020000	0.532338	
mm_147100.1	chr18	35654844	35655044	-	1	NA	NA	NA	255	NM_001270646	381148	Mm.297784	NM_001270646	ENSMUSG00000073600	Prob1	Gm1614	proline rich basic protein 1	protein-coding	0.115000	0.756219	
mm_19930.1	chr2	116065031	116065231	-	1	NA	NA	NA	-73	NM_010825	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.025000	0.477612	
mm_136468.1	chr16	95585534	95585734	-	1	NA	NA	NA	959	NM_001302152	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	0.085000	0.731343	
mm_10527.1	chr2	16401592	16401792	+	1	NA	NA	NA	45388	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.000000	0.402985	-93(TTTTTTAAAAGC,-,0.00)
mm_61928.1	chr7	90163993	90164193	+	1	NA	NA	NA	33861	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.005000	0.358209	
mm_85929.1	chr9	112087656	112087856	-	1	NA	NA	NA	30955	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.010000	0.472637	
mm_38461.1	chr4	140587750	140587950	-	1	NA	NA	NA	60906	NM_001112723	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.000000	0.477612	
mm_65167.1	chr7	19676926	19677126	-	1	NA	NA	NA	915	NM_001277944	11813	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0.005000	0.532338	
mm_53686.1	chr6	142387184	142387384	+	1	NA	NA	NA	41	NM_025872	66964	Mm.3676	NM_025872	ENSMUSG00000030245	Golt1b	2310061A22Rik|AA407874|AU024291|CGI-141	golgi transport 1B	protein-coding	0.155000	0.736318	
mm_44851.1	chr5	34220061	34220261	-	1	NA	NA	NA	-32451	NM_010753	17122	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.010000	0.467662	-78(GCCTCTATAGAG,-,0.00),66(GGTTATATAAGA,-,0.00)
mm_105785.1	chr11	109797300	109797500	-	1	NA	NA	NA	30646	NM_027038	69324	Mm.31700	NM_027038	ENSMUSG00000020617	1700012B07Rik	1700069D21Rik	RIKEN cDNA 1700012B07 gene	protein-coding	0.040000	0.482587	
mm_101473.1	chr11	30649417	30649617	-	1	NA	NA	NA	-121	NM_029344	75572	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	0.075000	0.616915	
mm_131713.1	chr16	21204679	21204879	+	1	NA	NA	NA	-16	NM_010143	13845	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	0.095000	0.701493	
mm_32835.1	chr4	117787176	117787376	+	1	NA	NA	NA	-21610	NM_029416	75753	Mm.3848	NM_029416	ENSMUSG00000048626	Klf17	7420700M05Rik|AA420409|AU043468|C85123|D4Ertd561e|Gzf|Zfp393	Kruppel-like factor 17	protein-coding	0.015000	0.502488	
mm_82850.1	chr9	31209512	31209712	-	1	NA	NA	NA	2203	NM_001102455	11804	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2	amyloid beta (A4) precursor-like protein 2	protein-coding	0.005000	0.368159	
mm_97091.1	chr11	73160289	73160489	+	1	NA	NA	NA	-141	NM_033321	94045	Mm.156893	NM_033321	ENSMUSG00000005950	P2rx5	P2X5	purinergic receptor P2X, ligand-gated ion channel, 5	protein-coding	0.095000	0.706468	
mm_149524.1	chr19	12457808	12458008	+	1	NA	NA	NA	-2871	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.025000	0.477612	
mm_76627.1	chr8	91801499	91801699	-	1	NA	NA	NA	55	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.070000	0.681592	
mm_108728.1	chr12	87387402	87387602	+	1	NA	NA	NA	853	NM_011479	20773	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.040000	0.542289	
mm_66346.1	chr7	43490102	43490302	-	1	NA	NA	NA	-179	NM_001164518	210094	Mm.228087	NM_001164518	ENSMUSG00000013367	Iglon5	A230106M20Rik|Gm1431	IgLON family member 5	protein-coding	0.090000	0.786070	
mm_77508.1	chr8	122752259	122752459	-	1	NA	NA	NA	-23127	NM_144932	257633	Mm.334875	NM_144932	ENSMUSG00000015016	Acsf3	BB101783	acyl-CoA synthetase family member 3	protein-coding	0.045000	0.567164	
mm_153255.1	chr19	36736563	36736763	-	1	NA	NA	NA	-59	NM_016854	53412	Mm.24724	NM_016854	ENSMUSG00000067279	Ppp1r3c	PTG|Ppp1r5	protein phosphatase 1, regulatory (inhibitor) subunit 3C	protein-coding	0.095000	0.631841	
mm_71290.1	chr8	41017637	41017837	+	1	NA	NA	NA	269	NR_015457	78849	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	0.010000	0.502488	
mm_97604.1	chr11	78949873	78950073	+	1	NA	NA	NA	24682	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.025000	0.611940	
mm_63569.1	chr7	128117268	128117468	+	1	NA	NA	NA	-12200	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.020000	0.512438	-57(CTTTTTCAAGCG,+,0.00)
mm_120816.1	chr14	75131496	75131696	+	1	NA	NA	NA	473	NM_001247984	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.030000	0.472637	-75(CTCTTTAAAAGG,-,0.00),-74(TCTTTAAAAGGA,+,0.00),-73(CTTTAAAAGGAC,+,0.00)
mm_73115.1	chr8	94749793	94749993	+	1	NA	NA	NA	4209	NM_009137	20299	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	0.025000	0.542289	
mm_150544.1	chr19	39315418	39315618	+	1	NA	NA	NA	28433	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.005000	0.363184	
mm_12381.1	chr2	69861546	69861746	+	1	NA	NA	NA	84	NM_009278	20823	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	0.090000	0.621891	
mm_58216.1	chr6	144209253	144209453	-	1	NA	NA	NA	215	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.015000	0.477612	
mm_29456.1	chr3	113532190	113532390	-	1	NA	NA	NA	42472	NM_007446	11722	Mm.439727	NM_007446	ENSMUSG00000074264	Amy1	Amy-1|Amy1a|C030014B17Rik	amylase 1, salivary	protein-coding	0.015000	0.383085	
mm_146000.1	chr18	68398032	68398232	+	1	NA	NA	NA	29708	NM_001271717	17200	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	0.010000	0.517413	
mm_73227.1	chr8	103603700	103603900	+	1	NA	NA	NA	1	NR_045730	71058	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0.005000	0.462687	
mm_30830.1	chr4	21931032	21931232	+	1	NA	NA	NA	-194	NM_175234	76132	Mm.159689	NM_175234	ENSMUSG00000028246	Faxc	6230409E13Rik|AW742931	failed axon connections homolog	protein-coding	0.130000	0.771144	
mm_39877.1	chr5	31077021	31077221	+	1	NA	NA	NA	16406	NM_011773	22784	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.035000	0.611940	
mm_15759.1	chr2	164289102	164289302	+	1	NA	NA	NA	-65	NM_001311114	64335	Mm.389393	NM_021363	ENSMUSG00000017003	Svs3a	9530026M05Rik|BB121242|Semg2|Svp-3|Svp3|Svs3	seminal vesicle secretory protein 3A	protein-coding	0.000000	0.432836	
mm_72952.1	chr8	92357763	92357963	+	1	NA	NA	NA	67	NM_018826	54352	Mm.101153	NM_018826	ENSMUSG00000031737	Irx5	-	Iroquois related homeobox 5 (Drosophila)	protein-coding	0.055000	0.636816	
mm_54066.1	chr6	13872232	13872432	-	1	NA	NA	NA	763	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0.030000	0.432836	-28(GTGTTTAAAAGG,-,0.00)
mm_57008.1	chr6	121130899	121131099	-	1	NA	NA	NA	23	NM_001270475	194401	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0.055000	0.592040	
mm_60974.1	chr7	48881249	48881449	+	1	NA	NA	NA	-308	NM_001013368	108961	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.110000	0.766169	
mm_119475.1	chr14	47319306	47319506	+	1	NA	NA	NA	21092	NM_178684	218975	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	0.020000	0.388060	
mm_131874.1	chr16	23191972	23192172	+	1	NA	NA	NA	-32668	NM_145933	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.015000	0.492537	
mm_67971.1	chr7	100653299	100653499	-	1	NA	NA	NA	3566	NM_001163187	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.005000	0.482587	
mm_165873.1	chr4	40720937	40721137	-	1	NA	NA	NA	1280	NR_077221	622208	Mm.471544	NR_077221		Gm6297	-	predicted gene 6297	ncRNA	0.025000	0.432836	30(GTCTTTAAAGCA,+,0.00)
mm_126491.1	chr15	81627102	81627302	+	1	NA	NA	NA	-36687	NM_001289712	214669	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	l(3)mbt-like 2 (Drosophila)	protein-coding	0.005000	0.517413	
mm_139741.1	chr17	62883296	62883496	+	1	NA	NA	NA	-2079	NM_010109	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.050000	0.487562	
mm_40606.1	chr5	64421344	64421544	+	1	NA	NA	NA	46498	NR_040681	69999	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.025000	0.442786	
mm_33685.1	chr4	133403844	133404044	+	1	NA	NA	NA	34168	NR_039582	100628620		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	0.015000	0.522388	-100(GCTTTTCTGGGC,+,0.00)
mm_43036.1	chr5	123997268	123997468	+	1	NA	NA	NA	516	NR_105999	102465625		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.040000	0.636816	
mm_97853.1	chr11	83069648	83069848	+	1	NA	NA	NA	4636	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.010000	0.517413	
mm_77468.1	chr8	122426124	122426324	-	1	NA	NA	NA	4139	NM_145834	234836	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.015000	0.592040	
mm_129674.1	chr15	81380637	81380837	-	1	NA	NA	NA	18957	NM_133726	70356	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	0.005000	0.343284	
mm_112060.1	chr12	111909074	111909274	-	1	NA	NA	NA	-1119	NM_011625	21981	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.010000	0.572139	-81(GCCCATAAGGGG,-,0.00)
mm_68737.1	chr7	121034337	121034537	-	1	NA	NA	NA	-8	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.080000	0.666667	
mm_112990.1	chr13	21716293	21716493	+	1	NA	NA	NA	-19	NM_178182	319191	Mm.14767	NM_178182	ENSMUSG00000071516	Hist1h2ai	H2a-291A	histone cluster 1, H2ai	protein-coding	0.075000	0.542289	
mm_56557.1	chr6	101198985	101199185	-	1	NA	NA	NA	178812	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.035000	0.557214	
mm_23762.1	chr3	73066238	73066438	+	1	NA	NA	NA	-13	NR_040557	626082	Mm.428099	NR_040557	ENSMUSG00000103428	Gm20754	-	predicted gene, 20754	ncRNA	0.050000	0.557214	
mm_89188.1	chr10	86346438	86346638	+	1	NA	NA	NA	46126	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.000000	0.502488	
mm_119570.1	chr14	50062187	50062387	+	1	NA	NA	NA	22392	NM_146316	258313	Mm.463727	NM_146316	ENSMUSG00000060523	Olfr726	MOR246-4	olfactory receptor 726	protein-coding	0.045000	0.636816	
mm_81899.1	chr9	119937532	119937732	+	1	NA	NA	NA	26	NM_028735	74052	Mm.189573	NM_028735	ENSMUSG00000032514	Ttc21a	4921538N17Rik|AA387572|Thm2	tetratricopeptide repeat domain 21A	protein-coding	0.075000	0.671642	
mm_35064.1	chr4	6453972	6454172	-	1	NA	NA	NA	199	NM_010945	18201	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.140000	0.786070	
mm_98351.1	chr11	93421328	93421528	+	1	NA	NA	NA	322138	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	0.000000	0.383085	-54(GCTTATATGTAC,+,0.00)
mm_56208.1	chr6	89273127	89273327	-	1	NA	NA	NA	12498	NR_131021	75131	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	-	RIKEN cDNA 4930512J16 gene	ncRNA	0.000000	0.522388	
mm_683.1	chr1	40515304	40515504	+	1	NA	NA	NA	42	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.015000	0.412935	
mm_24457.1	chr3	90613714	90613914	+	1	NA	NA	NA	920	NM_011313	20200	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0.010000	0.547264	
mm_21042.1	chr2	152539924	152540124	-	1	NA	NA	NA	17	NM_001001444	75400	Mm.45560	NM_001001444	ENSMUSG00000044249	Defb29	0610030I09Rik|BD-29|mBD-29	defensin beta 29	protein-coding	0.025000	0.557214	
mm_96545.1	chr11	68853218	68853418	+	1	NA	NA	NA	-187	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.065000	0.572139	
mm_79422.1	chr9	55396336	55396536	+	1	NA	NA	NA	69487	NM_172923	244886	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.020000	0.522388	
mm_167779.1	chr9	114363879	114364079	-	1	NA	NA	NA	648	NR_040738	75100	Mm.78599	NR_040738		4930525D18Rik	-	RIKEN cDNA 4930525D18 gene	ncRNA	0.005000	0.477612	-12(CTCTCTATAAAG,-,0.00),-10(CTCTATAAAGGG,+,0.00),-10(CTCTATAAAGGG,-,0.00)
mm_82272.1	chr9	7350018	7350218	-	1	NA	NA	NA	2744	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.358209	
mm_152226.1	chr19	8707747	8707947	-	1	NA	NA	NA	6050	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.040000	0.582090	
mm_34022.1	chr4	138035793	138035993	+	1	NA	NA	NA	42437	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.015000	0.442786	-36(AGCCTTTAAAGG,-,0.00),-35(GCCTTTAAAGGT,+,0.00),-35(GCCTTTAAAGGT,-,0.00),-34(CCTTTAAAGGTT,+,0.00)
mm_108985.1	chr12	102757671	102757871	+	1	NA	NA	NA	39	NM_001142939	100859931	Mm.291222	NM_001142939	ENSMUSG00000041716	Gm20604	AK010878-Moap1	predicted gene 20604	protein-coding	0.120000	0.661692	
mm_66741.1	chr7	46672457	46672657	-	1	NA	NA	NA	-20	NM_009414	21990	Mm.248684	NM_009414	ENSMUSG00000040046	Tph1	Tph	tryptophan hydroxylase 1	protein-coding	0.020000	0.492537	
mm_33336.1	chr4	129231611	129231811	+	1	NA	NA	NA	-3800	NM_001285866	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.010000	0.582090	-32(ACTTAAATAGTC,+,0.00)
mm_139969.1	chr17	71769556	71769756	+	1	NA	NA	NA	-35	NR_073185	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	0.010000	0.517413	
mm_112134.1	chr12	113000132	113000332	-	1	NA	NA	NA	389	NM_028193	72308	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	0.150000	0.706468	
mm_105631.1	chr11	106927941	106928141	-	1	NA	NA	NA	-7326	NM_025481	66313	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	0.000000	0.412935	
mm_35471.1	chr4	40806472	40806672	-	1	NA	NA	NA	43566	NR_039584	100628614		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.015000	0.472637	-79(GCGTTTTAAAAC,-,0.00)
mm_83148.1	chr9	40456043	40456243	-	1	NA	NA	NA	-379	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.055000	0.597015	
mm_153900.1	chr19	47068318	47068518	-	1	NA	NA	NA	670	NM_177342	226182	Mm.301522	NM_177342	ENSMUSG00000025049	Taf5	6330528C20Rik|AV117817	TATA-box binding protein associated factor 5	protein-coding	0.080000	0.681592	
mm_96.1	chr1	8936293	8936493	+	1	NA	NA	NA	363484	NM_001290390	71096	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	0.015000	0.502488	
mm_32755.1	chr4	116687106	116687306	+	1	NA	NA	NA	-1184	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.005000	0.432836	
mm_132245.1	chr16	32751054	32751254	+	1	NA	NA	NA	15268	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.005000	0.467662	
mm_74599.1	chr8	11635636	11635836	-	1	NA	NA	NA	0	NR_106097	102465714		NR_106097	ENSMUSG00000104958	Mir7238	mmu-mir-7238	microRNA 7238	ncRNA	0.105000	0.686567	
mm_92746.1	chr10	80998083	80998283	-	1	NA	NA	NA	3182	NM_001038655	14708	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.045000	0.567164	
mm_128342.1	chr15	39112571	39112771	-	1	NA	NA	NA	45	NM_172402	69906	Mm.17875	NM_172402	ENSMUSG00000022299	Slc25a32	2610043O12Rik|Mftc	solute carrier family 25, member 32	protein-coding	0.115000	0.726368	
mm_146163.1	chr18	75106094	75106294	+	1	NA	NA	NA	87422	NM_027727	69190	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	0.000000	0.278607	
mm_8599.1	chr1	156034694	156034894	-	1	NA	NA	NA	23	NM_001160019	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.000000	0.412935	
mm_30317.1	chr3	151731502	151731702	-	1	NA	NA	NA	18357	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.005000	0.378109	
mm_125679.1	chr15	66615681	66615881	+	1	NA	NA	NA	38209	NM_001081409	239510	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	0.010000	0.477612	
mm_144996.1	chr18	38297121	38297321	+	1	NA	NA	NA	416	NM_001164621	56736	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	0.040000	0.482587	
mm_123832.1	chr14	70627355	70627555	-	1	NA	NA	NA	-390	NM_001252663	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.010000	0.547264	
mm_36039.1	chr4	57241086	57241286	-	1	NA	NA	NA	60651	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.025000	0.527363	
mm_1533.1	chr1	72849182	72849382	+	1	NA	NA	NA	23895	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.025000	0.582090	
mm_15827.1	chr2	164643854	164644054	+	1	NA	NA	NA	-5152	NM_001012723	277345	Mm.247244	NM_001012723	ENSMUSG00000070530	Wfdc16	BC043944|WAP16	WAP four-disulfide core domain 16	protein-coding	0.015000	0.467662	67(CTTTTTAAAATC,+,0.00)
mm_111983.1	chr12	110471315	110471515	-	1	NA	NA	NA	-14324	NM_001081457	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.015000	0.537313	
mm_164783.1	chr18	7585603	7585803	+	1	NA	NA	NA	41160	NM_001081287	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0.005000	0.427861	
mm_66097.1	chr7	31036378	31036578	-	1	NA	NA	NA	3839	NR_106017	102465635		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.010000	0.502488	
mm_163274.1	chr11	115466571	115466771	+	1	NA	NA	NA	4198	NM_001080934	217316	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	0.000000	0.517413	
mm_104609.1	chr11	97187971	97188171	-	1	NA	NA	NA	-179	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.120000	0.731343	
mm_72046.1	chr8	71310595	71310795	+	1	NA	NA	NA	37981	NM_001142323	17925	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0.020000	0.472637	
mm_76645.1	chr8	93100315	93100515	-	1	NA	NA	NA	-20398	NM_001081372	382044	Mm.482549	NM_001081372	ENSMUSG00000078964	Ces1b	Gm5158	carboxylesterase 1B	protein-coding	0.005000	0.373134	
mm_141796.1	chr17	34344089	34344289	-	1	NA	NA	NA	456	NM_010381	100504404	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	0.010000	0.388060	
mm_101984.1	chr11	50556995	50557195	-	1	NA	NA	NA	-44990	NM_175643	216725	Mm.110597	NM_175643	ENSMUSG00000036545	Adamts2	ADAM-TS 2|ADAM-TS2|ADAMTS-2|PC I-NP|PCINP|pNPI	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2	protein-coding	0.000000	0.472637	
mm_160195.1	chr7	63924662	63924862	-	1	NA	NA	NA	7905	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.005000	0.572139	61(CCTTATATATCC,+,0.00)
mm_148288.1	chr18	82575107	82575307	-	1	NA	NA	NA	20699	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.015000	0.507463	
mm_165638.1	chr3	73708262	73708462	-	1	NA	NA	NA	53	NM_009738	12038	Mm.250719	NM_009738	ENSMUSG00000027792	Bche	C730038G20Rik	butyrylcholinesterase	protein-coding	0.035000	0.577114	
mm_12911.1	chr2	84840556	84840756	+	1	NA	NA	NA	30	NM_001083809	72401	Mm.22716	NM_024497	ENSMUSG00000027075	Slc43a1	2610016F07Rik|AA986141|Lat3|PB39|Pov1|R00504	solute carrier family 43, member 1	protein-coding	0.085000	0.676617	
mm_11066.1	chr2	27676146	27676346	+	1	NA	NA	NA	-955	NM_011305	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.055000	0.671642	
mm_164870.1	chr18	56733777	56733977	-	1	NA	NA	NA	26064	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.010000	0.477612	
mm_89182.1	chr10	86345821	86346021	+	1	NA	NA	NA	45509	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.030000	0.567164	
mm_34376.1	chr4	144893769	144893969	+	1	NA	NA	NA	732	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.050000	0.606965	
mm_79290.1	chr9	51213622	51213822	+	1	NA	NA	NA	32	NM_011136	18985	Mm.897	NM_011136	ENSMUSG00000032053	Pou2af1	BOB.1|Bob-1|Bob1|OBF-1|OBF.1|OCA-B|OCAB	POU domain, class 2, associating factor 1	protein-coding	0.030000	0.497512	-65(GGCCTTTAAAAA,-,0.00),-64(GCCTTTAAAAAG,-,0.00),-63(CCTTTAAAAAGC,+,0.00),-62(CTTTAAAAAGCT,+,0.00)
mm_71132.1	chr8	36745023	36745223	+	1	NA	NA	NA	-12069	NM_001194941	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.010000	0.437811	
mm_62832.1	chr7	113765742	113765942	+	1	NA	NA	NA	-156	NM_145584	233744	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.045000	0.542289	
mm_138050.1	chr17	33926172	33926372	+	1	NA	NA	NA	-3622	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.040000	0.606965	
mm_84681.1	chr9	72110752	72110952	-	1	NA	NA	NA	349	NM_001253862	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.055000	0.592040	
mm_146989.1	chr18	34007208	34007408	-	1	NA	NA	NA	-102	NM_013512	13824	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	0.080000	0.656716	
mm_101020.1	chr11	8575523	8575723	-	1	NA	NA	NA	88912	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.010000	0.467662	
mm_124844.1	chr15	9435994	9436194	+	1	NA	NA	NA	66	NM_029341	75568	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	0.020000	0.497512	
mm_120063.1	chr14	56903827	56904027	+	1	NA	NA	NA	16132	NM_029498	76007	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.010000	0.253731	
mm_102030.1	chr11	51693020	51693220	-	1	NA	NA	NA	-4486	NM_025319	66050	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	0.005000	0.253731	
mm_74169.1	chr8	123420717	123420917	+	1	NA	NA	NA	9253	NM_023279	22152	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	0.030000	0.601990	
mm_68042.1	chr7	101362675	101362875	-	1	NA	NA	NA	14706	NM_001040111	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.020000	0.537313	
mm_17803.1	chr2	33371286	33371486	-	1	NA	NA	NA	108	NM_001290570	241308	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0.110000	0.696517	
mm_157973.1	chrX	93831926	93832126	-	1	NA	NA	NA	69	NM_145630	236900	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	0.115000	0.701493	
mm_17034.1	chr2	20654587	20654787	-	1	NA	NA	NA	135174	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.010000	0.402985	
mm_148444.1	chr19	3964237	3964437	+	1	NA	NA	NA	5529	NM_028545	73458	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	0.005000	0.497512	
mm_165211.1	chr2	35341463	35341663	+	1	NA	NA	NA	-4554	NM_013515	13830	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.005000	0.303483	
mm_144090.1	chr18	3281142	3281342	+	1	NA	NA	NA	-110	NM_001311067	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.020000	0.422886	-32(TTTTTTAAAGGC,+,0.00)
mm_148186.1	chr18	78859773	78859973	-	1	NA	NA	NA	249518	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.005000	0.502488	
mm_134609.1	chr16	20717637	20717837	-	1	NA	NA	NA	-89	NM_145632	245841	Mm.288730	NM_145632	ENSMUSG00000021018	Polr2h	-	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding	0.095000	0.661692	
mm_118450.1	chr14	8332350	8332550	+	1	NA	NA	NA	-22674	NM_183187	268709	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0.005000	0.462687	
mm_134273.1	chr16	13986823	13987023	-	1	NA	NA	NA	-56	NM_001270718	74482	Mm.484026	NM_028968	ENSMUSG00000065968	Ifitm7	4933438K12Rik|Mil4	interferon induced transmembrane protein 7	protein-coding	0.065000	0.656716	
mm_6414.1	chr1	73015793	73015993	-	1	NA	NA	NA	6	NM_009407	21958	Mm.425024	NM_009407	ENSMUSG00000026182	Tnp1	Stp-1|TP1|Tp-1	transition protein 1	protein-coding	0.040000	0.562189	-37(GGCCTTAAATAC,-,0.00),-35(CCTTAAATACAT,+,0.00)
mm_80125.1	chr9	70579279	70579479	+	1	NA	NA	NA	36509	NM_025690	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.015000	0.427861	
mm_104014.1	chr11	85310988	85311188	-	1	NA	NA	NA	-166	NM_016910	53892	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	0.080000	0.631841	
mm_103107.1	chr11	69980152	69980352	-	1	NA	NA	NA	78	NM_001253700	54351	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.065000	0.597015	
mm_161870.1	chr18	36945910	36946110	+	1	NA	NA	NA	-197	NM_138662	192163	Mm.308500	NM_138662	ENSMUSG00000102312	Pcdha3	mKIAA0345	protocadherin alpha 3	protein-coding	0.020000	0.368159	
mm_120691.1	chr14	70774879	70775079	+	1	NA	NA	NA	598	NM_010071	13449	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip	docking protein 2	protein-coding	0.000000	0.517413	
mm_57241.1	chr6	123282984	123283184	-	1	NA	NA	NA	6787	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.010000	0.432836	
mm_4859.1	chr1	187616261	187616461	+	1	NA	NA	NA	7355	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.010000	0.522388	
mm_86904.1	chr10	22343334	22343534	+	1	NA	NA	NA	-18460	NM_020030	56554	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0.015000	0.502488	
mm_95133.1	chr11	34783173	34783373	+	1	NA	NA	NA	632	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.010000	0.507463	
mm_149809.1	chr19	23845508	23845708	+	1	NA	NA	NA	86732	NM_177034	319924	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.030000	0.422886	54(CTTTTTATGGCT,+,0.00)
mm_124242.1	chr14	101513929	101514129	-	1	NA	NA	NA	95162	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.005000	0.393035	
mm_112814.1	chr13	20794831	20795031	+	1	NA	NA	NA	818	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.522388	
mm_6315.1	chr1	71600252	71600452	-	1	NA	NA	NA	43196	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.040000	0.557214	
mm_30326.1	chr3	151731921	151732121	-	1	NA	NA	NA	17938	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.000000	0.288557	-100(TCTTTTAAACTG,+,0.00)
mm_95466.1	chr11	50601983	50602183	+	1	NA	NA	NA	-2	NM_175643	216725	Mm.110597	NM_175643	ENSMUSG00000036545	Adamts2	ADAM-TS 2|ADAM-TS2|ADAMTS-2|PC I-NP|PCINP|pNPI	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2	protein-coding	0.135000	0.791045	
mm_106582.1	chr11	120729509	120729709	-	1	NA	NA	NA	-2325	NM_001347608	67880	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	0.045000	0.552239	
mm_69476.1	chr7	133738854	133739054	-	1	NA	NA	NA	21315	NM_001286030	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.050000	0.611940	
mm_144737.1	chr18	35562362	35562562	+	1	NA	NA	NA	304	NM_010771	17184	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0.135000	0.756219	
mm_167524.1	chr9	21287607	21287807	+	1	NA	NA	NA	262	NM_145416	215194	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	0.075000	0.582090	
mm_60624.1	chr7	44708669	44708869	+	1	NA	NA	NA	26	NM_029317	75510	Mm.273301	NM_029317	ENSMUSG00000066500	Izumo2	1700023D19Rik	IZUMO family member 2	protein-coding	0.035000	0.611940	
mm_96362.1	chr11	67097821	67098021	+	1	NA	NA	NA	-1883	NR_105888	102466766		NR_105888	ENSMUSG00000098855	Mir6923	Gm27312|mmu-mir-6923	microRNA 6923	ncRNA	0.025000	0.517413	
mm_107806.1	chr12	65036239	65036439	+	1	NA	NA	NA	5	NM_177806	328110	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	0.135000	0.726368	
mm_126654.1	chr15	84192142	84192342	+	1	NA	NA	NA	9	NM_178614	68653	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0.075000	0.616915	
mm_51551.1	chr6	83317158	83317358	+	1	NA	NA	NA	346	NM_008638	17768	Mm.443	NM_008638	ENSMUSG00000005667	Mthfd2	AW558851|NMDMC	methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	protein-coding	0.070000	0.671642	
mm_82408.1	chr9	14771113	14771313	-	1	NA	NA	NA	-183	NM_029306	69325	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	0.030000	0.502488	
mm_144057.1	chr17	90611848	90612048	-	1	NA	NA	NA	-156068	NM_001346959	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.005000	0.348259	
mm_126765.1	chr15	85859936	85860136	+	1	NA	NA	NA	90	NM_013882	29870	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding	0.045000	0.542289	
mm_47612.1	chr5	125140779	125140979	-	1	NA	NA	NA	38335	NM_001253905	20602	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.035000	0.656716	
mm_94264.1	chr11	3514841	3515041	+	1	NA	NA	NA	257	NM_053267	114679	Mm.34046	NM_053267	ENSMUSG00000075702	Selenom	1500040L08Rik|A230103K18|Selm|Sepm	selenoprotein M	protein-coding	0.075000	0.666667	
mm_41384.1	chr5	90759258	90759458	+	1	NA	NA	NA	60	NM_009141	20311	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0.010000	0.542289	
mm_39619.1	chr5	24413290	24413490	+	1	NA	NA	NA	-61	NM_183000	171209	Mm.299636	NM_183000	ENSMUSG00000038276	Asic3	AW742291|Accn3|DRASIC|SLNAC1|TNAC1	acid-sensing (proton-gated) ion channel 3	protein-coding	0.025000	0.641791	
mm_92433.1	chr10	77166413	77166613	-	1	NA	NA	NA	17	NM_009929	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.070000	0.711443	
mm_91453.1	chr10	34019428	34019628	-	1	NA	NA	NA	88	NM_025614	66521	Mm.28528	NM_025614	ENSMUSG00000019782	Rwdd1	0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1	RWD domain containing 1	protein-coding	0.150000	0.731343	
mm_109076.1	chr12	104387675	104387875	+	1	NA	NA	NA	611	NM_009253	20717	Mm.395085	NM_009253	ENSMUSG00000079012	Serpina3m	3e46|AI195004|MMCM7|MMSPi2.4|Spi-2l|Spi-2rs1|Spi2-rs1|Spi2.4|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3M	protein-coding	0.010000	0.452736	
mm_13937.1	chr2	121140653	121140853	+	1	NA	NA	NA	-55	NM_177846	329504	Mm.219449	NM_177846	ENSMUSG00000074890	Lcmt2	D330024M17|Tyw4	leucine carboxyl methyltransferase 2	protein-coding	0.050000	0.527363	
mm_49689.1	chr6	33456910	33457110	+	1	NA	NA	NA	207860	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.005000	0.383085	
mm_45362.1	chr5	66001273	66001473	-	1	NA	NA	NA	2912	NR_027961	231253	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.010000	0.522388	
mm_89154.1	chr10	86032900	86033100	+	1	NA	NA	NA	10846	NM_001347151	69754	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	0.000000	0.398010	28(GTCTTTAAAAGG,-,0.00),29(TCTTTAAAAGGT,+,0.00)
mm_15355.1	chr2	156312323	156312523	+	1	NA	NA	NA	-50	NM_027585	70873	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	0.105000	0.706468	
mm_33523.1	chr4	130931919	130932119	+	1	NA	NA	NA	-12366	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.005000	0.497512	
mm_119274.1	chr14	34218125	34218325	+	1	NA	NA	NA	-1821	NM_176931	319508	Mm.228006	NM_176931	ENSMUSG00000041479	Syt15	CHR10SYT|E230025K04Rik|sytXV	synaptotagmin XV	protein-coding	0.020000	0.502488	
mm_18001.1	chr2	38214351	38214551	-	1	NA	NA	NA	72933	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.015000	0.333333	
mm_7588.1	chr1	125435338	125435538	-	1	NA	NA	NA	289	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.090000	0.721393	
mm_17916.1	chr2	35432488	35432688	-	1	NA	NA	NA	28861	NM_001308299	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.015000	0.522388	
mm_82773.1	chr9	26977806	26978006	-	1	NA	NA	NA	21643	NM_025862	66948	Mm.289244	NM_025862	ENSMUSG00000031969	Acad8	2310016C19Rik|AI786953	acyl-Coenzyme A dehydrogenase family, member 8	protein-coding	0.020000	0.482587	15(CAGCATTAAAGG,-,0.00)
mm_149601.1	chr19	16328532	16328732	+	1	NA	NA	NA	-13628	NR_105832	102465218		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.025000	0.537313	
mm_51104.1	chr6	67277683	67277883	+	1	NA	NA	NA	10804	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.020000	0.363184	
mm_83370.1	chr9	44479634	44479834	-	1	NA	NA	NA	-19402	NM_030256	80288	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.020000	0.557214	
mm_51466.1	chr6	82737267	82737467	+	1	NA	NA	NA	37087	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.030000	0.592040	
mm_1276.1	chr1	63445864	63446064	+	1	NA	NA	NA	73	NM_011780	23792	Mm.124892	NM_011780	ENSMUSG00000025964	Adam23	AW046396|MDC3	a disintegrin and metallopeptidase domain 23	protein-coding	0.115000	0.741294	
mm_15479.1	chr2	157561380	157561580	+	1	NA	NA	NA	1402	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.050000	0.656716	
mm_127707.1	chr15	102998137	102998337	+	1	NA	NA	NA	7698	NM_010466	15426	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.050000	0.447761	
mm_117625.1	chr13	91876783	91876983	-	1	NA	NA	NA	2	NM_198415	76722	Mm.316438	NM_198415	ENSMUSG00000021622	Ckmt2	2300008A19Rik|ScCKmit	creatine kinase, mitochondrial 2	protein-coding	0.015000	0.527363	
mm_100103.1	chr11	115766607	115766807	+	1	NA	NA	NA	1274	NM_028014	71947	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	0.010000	0.452736	
mm_3894.1	chr1	161396764	161396964	+	1	NA	NA	NA	1426	NM_009452	22164	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	0.025000	0.477612	-59(GGCTTTTTAAAG,-,0.00),-57(CTTTTTAAAGAA,+,0.00)
mm_7143.1	chr1	91216855	91217055	-	1	NA	NA	NA	-33364	NM_026454	67921	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0.015000	0.432836	
mm_89064.1	chr10	82896968	82897168	+	1	NA	NA	NA	30442	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.025000	0.427861	
mm_120120.1	chr14	59625185	59625385	+	1	NA	NA	NA	4	NM_145463	219134	Mm.275409	NM_145463	ENSMUSG00000044461	Shisa2	9430059P22Rik|MAd2|Tmem46|mShisa|shisa	shisa family member 2	protein-coding	0.090000	0.681592	
mm_7841.1	chr1	132357542	132357742	-	1	NA	NA	NA	10306	NM_001311108	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.060000	0.616915	
mm_162088.1	chrX	37432403	37432603	+	1	NA	NA	NA	9	NM_021300	57737	Mm.327419	NM_021300	ENSMUSG00000071771	Rhox4b	5430432L21Rik|Ehox|Rhox4.2|Rhox4a	reproductive homeobox 4B	protein-coding	0.045000	0.517413	
mm_48418.1	chr5	140360303	140360503	-	1	NA	NA	NA	28481	NM_008637	17766	Mm.118846	NM_008637	ENSMUSG00000036639	Nudt1	Mth1	nudix (nucleoside diphosphate linked moiety X)-type motif 1	protein-coding	0.040000	0.646766	
mm_64011.1	chr7	140217994	140218194	+	1	NA	NA	NA	-173	NM_172909	244233	Mm.19283	NM_172909	ENSMUSG00000025461	Cd163l1	B430307C05|E430002D04Rik|Scart1	CD163 molecule-like 1	protein-coding	0.010000	0.467662	
mm_125415.1	chr15	41789411	41789611	+	1	NA	NA	NA	-4	NM_001130163	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.050000	0.532338	43(AACTTTAAAAAC,-,0.00)
mm_16217.1	chr2	173082677	173082877	+	1	NA	NA	NA	36748	NM_001081387	664799	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris|OTTMUSG00000016680	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.005000	0.502488	
mm_21811.1	chr2	165135350	165135550	-	1	NA	NA	NA	-44700	NR_033448	72211	Mm.482899	NR_033448	ENSMUSG00000078935	1700025C18Rik	-	RIKEN cDNA 1700025C18 gene	ncRNA	0.030000	0.626866	
mm_131904.1	chr16	23268417	23268617	+	1	NA	NA	NA	-21953	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.025000	0.532338	
mm_83143.1	chr9	40455413	40455613	-	1	NA	NA	NA	251	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.100000	0.686567	-33(GCTTTAAGATGC,+,0.00)
mm_76354.1	chr8	84771894	84772094	-	1	NA	NA	NA	2375	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.060000	0.597015	57(TTGTTTAAAGGG,-,0.00)
mm_132764.1	chr16	44724493	44724693	+	1	NA	NA	NA	292	NM_145972	212547	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	0.095000	0.686567	
mm_32246.1	chr4	102569995	102570195	+	1	NA	NA	NA	35	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.020000	0.477612	
mm_24873.1	chr3	95982294	95982494	+	1	NA	NA	NA	-3116	NR_045872	668224	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0.015000	0.482587	
mm_128518.1	chr15	53902322	53902522	-	1	NA	NA	NA	14	NM_177225	320679	Mm.442455	NM_177225	ENSMUSG00000058656	Samd12	A830094I09Rik	sterile alpha motif domain containing 12	protein-coding	0.060000	0.572139	
mm_165996.1	chr4	112232300	112232500	+	1	NA	NA	NA	-21	NM_001102474	195564	Mm.259652	NM_177578	ENSMUSG00000070868	Skint3	A430090E18Rik|Skint-3	selection and upkeep of intraepithelial T cells 3	protein-coding	0.010000	0.338308	
mm_77421.1	chr8	121082937	121083137	-	1	NA	NA	NA	73	NR_045471	68790	Mm.246916	NR_045471	ENSMUSG00000097336	Fendrr	1110050K14Rik|LL66|linc-Foxf1a|lincFoxf1	Foxf1 adjacent non-coding developmental regulatory RNA	ncRNA	0.140000	0.731343	
mm_155499.1	chrX	73774329	73774529	+	1	NA	NA	NA	24	NM_019684	56504	Mm.111904	NM_019684	ENSMUSG00000002007	Srpk3	Mssk1|Stk23	serine/arginine-rich protein specific kinase 3	protein-coding	0.035000	0.587065	-58(AGCTATAAATGC,-,0.00)
mm_136023.1	chr16	76347852	76348052	-	1	NA	NA	NA	25097	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.025000	0.417910	
mm_68184.1	chr7	104143145	104143345	-	1	NA	NA	NA	27	NM_198623	244178	Mm.334092	NM_198623	ENSMUSG00000051618	Ubqln3	4933400K24Rik	ubiquilin 3	protein-coding	0.005000	0.552239	
mm_115961.1	chr13	23763431	23763631	-	1	NA	NA	NA	-137	NM_030609	80838	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	0.050000	0.567164	
mm_17307.1	chr2	26360758	26360958	-	1	NA	NA	NA	-1311	NM_001037747	332579	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	0.005000	0.562189	
mm_27507.1	chr3	55783381	55783581	-	1	NA	NA	NA	971	NM_010750	17116	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.045000	0.567164	-40(GCATTTAAAGGC,+,0.00),-40(GCATTTAAAGGC,-,0.00)
mm_107065.1	chr12	16810885	16811085	+	1	NA	NA	NA	20	NM_033270	50496	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	0.130000	0.716418	
mm_171939.1	chr5	66594949	66595149	-	1	NA	NA	NA	23768	NM_009686	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.045000	0.601990	
mm_105801.1	chr11	110168028	110168228	-	1	NA	NA	NA	25	NM_147220	217262	Mm.291459	NM_147220	ENSMUSG00000041797	Abca9	D630040K07Rik	ATP-binding cassette, sub-family A (ABC1), member 9	protein-coding	0.020000	0.477612	
mm_127996.1	chr15	12681628	12681828	-	1	NA	NA	NA	-89172	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.005000	0.407960	
mm_77197.1	chr8	112030795	112030995	-	1	NA	NA	NA	19536	NM_020584	57321	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	0.015000	0.587065	
mm_58229.1	chr6	144779264	144779464	-	1	NA	NA	NA	106496	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA	0.020000	0.427861	
mm_98588.1	chr11	95768237	95768437	+	1	NA	NA	NA	19270	NM_201609	268469	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	0.010000	0.402985	
mm_97806.1	chr11	82961166	82961366	+	1	NA	NA	NA	-585	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.010000	0.452736	
mm_98707.1	chr11	96306441	96306641	+	1	NA	NA	NA	369	NR_131758	75395	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	0.005000	0.482587	
mm_153253.1	chr19	36689188	36689388	-	1	NA	NA	NA	191	NR_033510	668215	Mm.394223	NR_033510	ENSMUSG00000087579	1500017E21Rik	-	RIKEN cDNA 1500017E21 gene	ncRNA	0.010000	0.527363	
mm_77787.1	chr9	3025763	3025963	+	1	NA	NA	NA	12880	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.015000	0.358209	
mm_126731.1	chr15	85645601	85645801	+	1	NA	NA	NA	-58072	NR_110483	102800312	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0.020000	0.507463	
mm_108288.1	chr12	79139915	79140115	+	1	NA	NA	NA	9227	NM_009705	11847	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.015000	0.462687	
mm_54671.1	chr6	39207374	39207574	-	1	NA	NA	NA	-701	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.025000	0.502488	
mm_116760.1	chr13	52567924	52568124	-	1	NA	NA	NA	5201	NR_046069	100040572	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0.020000	0.542289	
mm_122722.1	chr14	52304993	52305193	-	1	NA	NA	NA	31	NM_019721	56335	Mm.271759	NM_019721	ENSMUSG00000022160	Mettl3	2310024F18Rik|M6A|Spo8	methyltransferase like 3	protein-coding	0.095000	0.597015	
mm_105948.1	chr11	115285357	115285557	-	1	NA	NA	NA	-8488	NM_007997	14149	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	-	ferredoxin reductase	protein-coding	0.010000	0.517413	
mm_30905.1	chr4	32376171	32376371	+	1	NA	NA	NA	-41164	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.015000	0.442786	
mm_100998.1	chr11	8468400	8468600	-	1	NA	NA	NA	196035	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.030000	0.656716	
mm_118632.1	chr14	21280646	21280846	+	1	NA	NA	NA	204594	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.015000	0.333333	-33(GACTATAAAAAG,-,0.00)
mm_104411.1	chr11	94601789	94601989	-	1	NA	NA	NA	-103	NM_153807	264895	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0.095000	0.681592	
mm_56256.1	chr6	90781952	90782152	-	1	NA	NA	NA	28071	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.050000	0.651741	
mm_1537.1	chr1	72851900	72852100	+	1	NA	NA	NA	22865	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.030000	0.587065	
mm_17027.1	chr2	19547202	19547402	-	1	NA	NA	NA	6608	NM_027600	70909	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	0.010000	0.427861	
mm_96986.1	chr11	70656851	70657051	+	1	NA	NA	NA	-225	NM_001136062	13808	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.005000	0.477612	-91(CTTTCTAAAAGG,-,0.00)
mm_94255.1	chr11	3332343	3332543	+	1	NA	NA	NA	1712	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.075000	0.641791	
mm_158062.1	chrX	101212711	101212911	-	1	NA	NA	NA	9752	NM_001110311	55988	Mm.206949	NM_018875	ENSMUSG00000046032	Snx12	2610001F05Rik|AW045757|SDP8	sorting nexin 12	protein-coding	0.030000	0.507463	
mm_106696.1	chr12	3463279	3463479	+	1	NA	NA	NA	36522	NM_172421	75302	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2 (Drosophila)	protein-coding	0.005000	0.308458	-47(CTTTTTATGTGC,+,0.00)
mm_114621.1	chr13	75967673	75967873	+	1	NA	NA	NA	34	NM_029343	75571	Mm.443291	NM_029343	ENSMUSG00000021590	Spata9	1700030K01Rik|4930599C08Rik|A930023H06Rik	spermatogenesis associated 9	protein-coding	0.005000	0.482587	
mm_150746.1	chr19	43786876	43787076	+	1	NA	NA	NA	4668	NM_013806	12780	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0.025000	0.432836	
mm_171434.1	chr4	140701175	140701375	-	1	NA	NA	NA	-198	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.120000	0.676617	
mm_159830.1	chr5	125387511	125387711	-	1	NA	NA	NA	2406	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.015000	0.582090	
mm_62866.1	chr7	114722100	114722300	+	1	NA	NA	NA	3557	NM_054084	116903	Mm.273838	NM_054084	ENSMUSG00000030666	Calcb	CGRP2|Calc2	calcitonin-related polypeptide, beta	protein-coding	0.035000	0.532338	
mm_97888.1	chr11	83298818	83299018	+	1	NA	NA	NA	59	NM_134025	103737	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding	0.095000	0.626866	
mm_33590.1	chr4	132563514	132563714	+	1	NA	NA	NA	-453	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.005000	0.557214	
mm_131068.1	chr16	4639867	4640067	+	1	NA	NA	NA	22	NM_139307	246154	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0.065000	0.651741	
mm_91123.1	chr10	19584145	19584345	-	1	NA	NA	NA	-7704	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.005000	0.562189	
mm_172810.1	chr9	123689325	123689525	-	1	NA	NA	NA	-10593	NM_139142	102680	Mm.440867	NM_139142	ENSMUSG00000036814	Slc6a20a	A730081N20Rik|AU022428|Xt3s1|Xtrp3s1	solute carrier family 6 (neurotransmitter transporter), member 20A	protein-coding	0.015000	0.502488	
mm_116127.1	chr13	28952788	28952988	-	1	NA	NA	NA	794	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.115000	0.696517	59(GCCTTTATGGTG,+,0.00)
mm_118035.1	chr13	101692221	101692421	-	1	NA	NA	NA	309	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.030000	0.447761	
mm_148050.1	chr18	71506008	71506208	-	1	NA	NA	NA	844961	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.005000	0.348259	
mm_97792.1	chr11	82892022	82892222	+	1	NA	NA	NA	-23	NM_030224	78919	Mm.286733	NM_030224	ENSMUSG00000018844	Fndc8	4930466G16Rik	fibronectin type III domain containing 8	protein-coding	0.020000	0.557214	
mm_42215.1	chr5	113060380	113060580	+	1	NA	NA	NA	9637	NM_007773	12961	Mm.1215	NM_007773	ENSMUSG00000042240	Crybb2	Cryb-2	crystallin, beta B2	protein-coding	0.015000	0.402985	
mm_46332.1	chr5	101239593	101239793	-	1	NA	NA	NA	393464	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|Gpat3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding	0.030000	0.472637	
mm_5223.1	chr1	14304502	14304702	-	1	NA	NA	NA	5597	NM_001310459	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.005000	0.487562	-32(CCACTTAAAGAC,+,0.00)
mm_5077.1	chr1	3671689	3671889	-	1	NA	NA	NA	-291	NM_001011874	497097	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.080000	0.721393	
mm_76992.1	chr8	107065541	107065741	-	1	NA	NA	NA	3	NM_025458	66269	Mm.23032	NM_025458	ENSMUSG00000031919	Tmed6	1810015P03Rik|1810018I24Rik	transmembrane p24 trafficking protein 6	protein-coding	0.020000	0.527363	
mm_134823.1	chr16	26064652	26064852	-	1	NA	NA	NA	41032	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.000000	0.298507	
mm_141942.1	chr17	35051736	35051936	-	1	NA	NA	NA	1593	NM_033444	114584	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.015000	0.562189	
mm_105719.1	chr11	108533567	108533767	-	1	NA	NA	NA	108401	NM_029606	76380	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0.005000	0.432836	
mm_6265.1	chr1	69541276	69541476	-	1	NA	NA	NA	144584	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.000000	0.447761	-85(ATGCCTAAAAGG,-,0.00)
mm_106992.1	chr12	11265775	11265975	+	1	NA	NA	NA	-11	NM_001324476	67241	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	0.090000	0.646766	
mm_23649.1	chr3	67504114	67504314	+	1	NA	NA	NA	11309	NM_001164763	109222	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	0.010000	0.497512	
mm_25241.1	chr3	103914321	103914521	+	1	NA	NA	NA	301	NM_172684	229675	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0.080000	0.621891	
mm_72087.1	chr8	71579238	71579438	+	1	NA	NA	NA	10411	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.015000	0.537313	-28(AGCCATTAAAGG,-,0.00),-26(CCATTAAAGGAC,+,0.00)
mm_45691.1	chr5	81555970	81556170	-	1	NA	NA	NA	534477	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.035000	0.452736	
mm_61707.1	chr7	81213727	81213927	+	1	NA	NA	NA	23	NM_008803	18584	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.185000	0.796020	
mm_91004.1	chr10	14545302	14545502	-	1	NA	NA	NA	-366	NM_001002268	215798	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.115000	0.761194	
mm_63134.1	chr7	123031174	123031374	+	1	NA	NA	NA	60710	NM_175023	19647	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6	protein-coding	0.025000	0.527363	
mm_81277.1	chr9	108290365	108290565	+	1	NA	NA	NA	8	NM_025449	66257	Mm.10407	NM_025449	ENSMUSG00000032606	Nicn1	1500032A17Rik	nicolin 1	protein-coding	0.035000	0.482587	
mm_130372.1	chr15	97823534	97823734	-	1	NA	NA	NA	8133	NM_019572	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.020000	0.512438	
mm_71967.1	chr8	70531520	70531720	+	1	NA	NA	NA	3774	NM_001199631	14232	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|Fkbp38	FK506 binding protein 8	protein-coding	0.050000	0.641791	
mm_125501.1	chr15	55258301	55258501	+	1	NA	NA	NA	-49349	NM_181277	12818	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.005000	0.328358	
mm_77591.1	chr8	123891780	123891980	-	1	NA	NA	NA	2895	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.060000	0.507463	
mm_162576.1	chr1	177447069	177447269	+	1	NA	NA	NA	1348	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.015000	0.517413	
mm_56539.1	chr6	99669488	99669688	-	1	NA	NA	NA	-2817	NM_025829	66892	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.005000	0.512438	
mm_54374.1	chr6	31190575	31190775	-	1	NA	NA	NA	27799	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.000000	0.378109	
mm_64240.1	chr7	141701307	141701507	+	1	NA	NA	NA	11067	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.010256	0.489796	
mm_60531.1	chr7	44480180	44480380	+	1	NA	NA	NA	-4237	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.502488	
mm_95013.1	chr11	31935021	31935221	+	1	NA	NA	NA	-30512	NM_026262	67592	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	0.000000	0.194030	
mm_41366.1	chr5	90508667	90508867	+	1	NA	NA	NA	-10182	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.000000	0.323383	-65(CTTTTTATATTG,+,0.00)
mm_163259.1	chr11	112469104	112469304	-	1	NA	NA	NA	242152	NR_024085	217294	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA	0.010000	0.338308	76(CTTTTTCTGGGC,+,0.00)
mm_81021.1	chr9	104361731	104361931	+	1	NA	NA	NA	-24109	NM_207668	56318	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	0.025000	0.547264	
mm_136126.1	chr16	85900964	85901164	-	1	NA	NA	NA	61	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0.105000	0.626866	-95(CCCTTTAAGAGG,-,0.00),-94(CCTTTAAGAGGC,+,0.00)
mm_45867.1	chr5	87929998	87930198	-	1	NA	NA	NA	4465	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.010000	0.452736	
mm_149804.1	chr19	23730106	23730306	+	1	NA	NA	NA	-28670	NM_177034	319924	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.015000	0.353234	
mm_57597.1	chr6	127794572	127794772	-	1	NA	NA	NA	-6529	NR_106092	102466996		NR_106092	ENSMUSG00000104804	Mir7233	mmu-mir-7233	microRNA 7233	ncRNA	0.000000	0.368159	60(GCATTTAAGGAG,+,0.00)
mm_159535.1	chr4	73790682	73790882	-	1	NA	NA	NA	-180	NM_001017427	242505	Mm.389582	NM_001017427	ENSMUSG00000043003	Rasef	BC030882|RAB45	RAS and EF hand domain containing	protein-coding	0.140000	0.736318	
mm_171869.1	chr5	25025828	25026028	-	1	NA	NA	NA	-30175	NM_001310480	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.040000	0.587065	
mm_828.1	chr1	51289024	51289224	+	1	NA	NA	NA	-2	NM_138741	20324	Mm.398690	NM_138741	ENSMUSG00000045954	Sdpr	-	serum deprivation response	protein-coding	0.015000	0.467662	-92(GCCTCTAAATGA,-,0.00)
mm_46375.1	chr5	103753746	103753946	-	1	NA	NA	NA	-316	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.120000	0.731343	-33(CTCCTTTTAAGG,-,0.00),-32(TCCTTTTAAGGG,-,0.00),-31(CCTTTTAAGGGC,+,0.00)
mm_75887.1	chr8	70839559	70839759	-	1	NA	NA	NA	61	NM_027560	70807	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	0.060000	0.592040	
mm_48197.1	chr5	137531049	137531249	-	1	NA	NA	NA	-1555	NR_105846	102465227		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0.065000	0.666667	
mm_27753.1	chr3	69596176	69596376	-	1	NA	NA	NA	2684	NM_020026	26879	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0.005000	0.512438	
mm_99814.1	chr11	108407194	108407394	+	1	NA	NA	NA	11997	NM_013475	11818	Mm.2266	NM_013475	ENSMUSG00000000049	Apoh	B2GPI|beta-2-GPI|beta2-GPI	apolipoprotein H	protein-coding	0.005000	0.462687	
mm_1165.1	chr1	60910970	60911170	+	1	NA	NA	NA	2045	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.005000	0.442786	
mm_4775.1	chr1	182861070	182861270	+	1	NA	NA	NA	-93618	NM_016928	53791	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.005000	0.502488	
mm_93897.1	chr10	125389392	125389592	-	1	NA	NA	NA	-60957	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.100000	0.751244	
mm_110220.1	chr12	28635137	28635337	-	1	NA	NA	NA	716	NM_011300	20115	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	0.020000	0.462687	
mm_38083.1	chr4	134129508	134129708	-	1	NA	NA	NA	-855	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.015000	0.522388	
mm_76129.1	chr8	80880190	80880390	-	1	NA	NA	NA	189	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.120000	0.766169	
mm_148505.1	chr19	4204116	4204316	+	1	NA	NA	NA	-2613	NM_011237	19367	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0.010000	0.552239	
mm_144383.1	chr18	20666460	20666660	+	1	NA	NA	NA	1310	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.020000	0.512438	
mm_153748.1	chr19	45006017	45006217	-	1	NA	NA	NA	325	NM_053164	94067	Mm.44174	NM_053164	ENSMUSG00000025208	Mrpl43	4930442D21Rik|bMRP36a	mitochondrial ribosomal protein L43	protein-coding	0.135000	0.681592	
mm_32625.1	chr4	114680676	114680876	+	1	NA	NA	NA	-140944	NR_033617	433746	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	OTTMUSG00000008584	predicted gene 12830	ncRNA	0.010000	0.537313	
mm_108145.1	chr12	76255304	76255504	+	1	NA	NA	NA	172	NM_138745	108156	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0.095000	0.641791	
mm_56315.1	chr6	92242590	92242790	-	1	NA	NA	NA	1960	NM_009426	22044	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	0.005000	0.582090	
mm_87861.1	chr10	61175588	61175788	+	1	NA	NA	NA	426	NM_023064	65971	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.020000	0.606965	
mm_71546.1	chr8	47824436	47824636	+	1	NA	NA	NA	54	NM_029383	75677	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	0.040000	0.542289	
mm_32401.1	chr4	106910331	106910531	+	1	NA	NA	NA	-1039	NM_198438	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.020000	0.422886	-33(CTCTTTTAAAGA,-,0.00),-32(TCTTTTAAAGAG,+,0.00),19(CGCTCTAAAAAC,-,0.00)
mm_138148.1	chr17	34205465	34205665	+	1	NA	NA	NA	1086	NM_011530	21355	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.035000	0.646766	
mm_64934.1	chr7	16295345	16295545	-	1	NA	NA	NA	-8650	NM_001136471	243846	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0.050000	0.621891	
mm_149380.1	chr19	11379060	11379260	+	1	NA	NA	NA	3672	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.005000	0.368159	
mm_138173.1	chr17	34264754	34264954	+	1	NA	NA	NA	1627	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.110000	0.621891	
mm_97503.1	chr11	78465490	78465690	+	1	NA	NA	NA	-111	NM_026740	52466	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	0.040000	0.497512	
mm_73101.1	chr8	94570077	94570277	+	1	NA	NA	NA	31549	NM_028221	102122	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	0.030000	0.547264	
mm_64980.1	chr7	16915368	16915568	-	1	NA	NA	NA	8564	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.020000	0.363184	
mm_92364.1	chr10	75940472	75940672	-	1	NA	NA	NA	100	NM_001277132	333670	Mm.291320	NM_001037714	ENSMUSG00000050157	Gm867	Gm736	predicted gene 867	protein-coding	0.000000	0.572139	
mm_110213.1	chr12	28623189	28623389	-	1	NA	NA	NA	41	NM_001313978	71693	Mm.30724	NM_027866	ENSMUSG00000036655	Colec11	CL-K1	collectin sub-family member 11	protein-coding	0.015000	0.577114	
mm_25036.1	chr3	98279933	98280133	+	1	NA	NA	NA	-398	NM_008256	15360	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.000000	0.447761	-34(GGGTATTTAAGA,-,0.00)
mm_57905.1	chr6	132364032	132364232	-	1	NA	NA	NA	2	NM_001177588	667929	Mm.428480	NM_001177588	ENSMUSG00000030143	Gm8882	EG667929	predicted gene 8882	protein-coding	0.005000	0.472637	-33(CCTTATAAAGAC,+,0.00)
mm_104522.1	chr11	96065260	96065460	-	1	NA	NA	NA	4	NM_172300	268470	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	0.115000	0.741294	
mm_94781.1	chr11	21572204	21572404	+	1	NA	NA	NA	23	NM_145425	216560	Mm.138090	NM_145425	ENSMUSG00000020319	Wdpcp	AV249152	WD repeat containing planar cell polarity effector	protein-coding	0.070000	0.587065	-78(CCTTTTAAAAAC,+,0.00)
mm_14696.1	chr2	142217486	142217686	+	1	NA	NA	NA	683878	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.005000	0.393035	
mm_23344.1	chr3	54717480	54717680	+	1	NA	NA	NA	17784	NM_027148	69639	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	0.020000	0.497512	
mm_22714.1	chr3	19188150	19188350	+	1	NA	NA	NA	29	NR_045575	67472	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.060000	0.676617	
mm_166753.1	chr6	125425359	125425559	-	1	NA	NA	NA	-44955	NM_198604	213522	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.025000	0.572139	
mm_41372.1	chr5	90561007	90561207	+	1	NA	NA	NA	-102	NM_001252661	622307	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	0.020000	0.363184	37(CACTAGAAAAGC,-,0.00)
mm_148020.1	chr18	68429218	68429418	-	1	NA	NA	NA	2	NM_001301372	17200	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	0.015000	0.412935	
mm_70498.1	chr8	12762551	12762751	+	1	NA	NA	NA	5635	NM_001293667	50770	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	0.005000	0.497512	
mm_67477.1	chr7	80535042	80535242	-	1	NA	NA	NA	-23	NM_001042527	12144	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ helicase-like	protein-coding	0.105000	0.666667	
mm_20837.1	chr2	147281023	147281223	-	1	NA	NA	NA	81670	NR_040330	99041	Mm.373081	NR_040330		AI646519	Aspax1|OTTMUSG00000015701	expressed sequence AI646519	ncRNA	0.020000	0.373134	
mm_65989.1	chr7	30534704	30534904	-	1	NA	NA	NA	256	NM_001289670	233071	Mm.190704	NM_178252	ENSMUSG00000036882	Arhgap33	AW324378|NOMA-GAP|Snx26|TCGAP	Rho GTPase activating protein 33	protein-coding	0.140000	0.786070	
mm_148690.1	chr19	5727118	5727318	+	1	NA	NA	NA	-901	NM_053252	114601	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0.020000	0.497512	
mm_99056.1	chr11	99052022	99052222	+	1	NA	NA	NA	10862	NM_010517	16010	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.020000	0.557214	
mm_104248.1	chr11	88863706	88863906	-	1	NA	NA	NA	780	NM_001042541	11640	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	0.040000	0.592040	
mm_170593.1	chr19	5802072	5802272	-	1	NA	NA	NA	500	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.045000	0.437811	
mm_73831.1	chr8	117460433	117460633	+	1	NA	NA	NA	1268	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.005000	0.577114	-46(CCCCTTTTAAGC,-,0.00),-44(CCTTTTAAGCTG,+,0.00)
mm_112304.1	chr12	114764803	114765003	-	1	NA	NA	NA	-251209	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.447761	-43(CACCCTAAAAAC,-,0.00)
mm_79274.1	chr9	50756334	50756534	+	1	NA	NA	NA	3463	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.030000	0.522388	
mm_56515.1	chr6	99435257	99435457	-	1	NA	NA	NA	-12	NM_053202	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.030000	0.482587	
mm_98633.1	chr11	96123997	96124197	+	1	NA	NA	NA	-9689	NM_172799	237930	Mm.249912	NM_172799	ENSMUSG00000038756	Ttll6	4932418K24Rik|D11Moh43e|D11Moh44e|t8130b59	tubulin tyrosine ligase-like family, member 6	protein-coding	0.030000	0.457711	
mm_89443.1	chr10	92680279	92680479	+	1	NA	NA	NA	42039	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	0.010000	0.398010	
mm_86546.1	chr10	9882109	9882309	+	1	NA	NA	NA	18831	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0.025000	0.582090	
mm_111724.1	chr12	103764721	103764921	-	1	NA	NA	NA	8812	NM_009246	20703	Mm.439695	NM_009246	ENSMUSG00000071177	Serpina1d	AI118301|Dom4|PI4|Spi1-4	serine (or cysteine) peptidase inhibitor, clade A, member 1D	protein-coding	0.010000	0.462687	
mm_12896.1	chr2	84798781	84798981	+	1	NA	NA	NA	53	NM_019949	56791	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.050000	0.626866	
mm_141244.1	chr17	27467782	27467982	-	1	NA	NA	NA	35651	NM_001013385	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.020000	0.567164	
mm_130652.1	chr15	100636777	100636977	-	1	NA	NA	NA	63	NR_104338	207818	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.155000	0.791045	
mm_2933.1	chr1	132298541	132298741	+	1	NA	NA	NA	15	NM_144810	213417	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0.080000	0.696517	
mm_172169.1	chr6	44793059	44793259	+	1	NA	NA	NA	-266902	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.070000	0.542289	27(AACTTTAAATGG,-,0.00)
mm_13922.1	chr2	120629020	120629220	+	1	NA	NA	NA	19525	NM_001290807	66296	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0.075000	0.691542	
mm_139509.1	chr17	56325971	56326171	+	1	NA	NA	NA	21	NM_172132	193796	Mm.45047	NM_172132	ENSMUSG00000024201	Kdm4b	4732474L06Rik|Jmjd2b|mKIAA0876	lysine (K)-specific demethylase 4B	protein-coding	0.135000	0.731343	
mm_157431.1	chrX	38576077	38576277	-	1	NA	NA	NA	19	NM_028288	72584	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	0.035000	0.482587	
mm_141524.1	chr17	31790546	31790746	-	1	NA	NA	NA	65146	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.045000	0.582090	
mm_92591.1	chr10	80075293	80075493	-	1	NA	NA	NA	21374	NM_001037741	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.050000	0.636816	
mm_168052.1	chrY	90812299	90812499	+	1	NA	NA	NA	26957	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.015000	0.512438	
mm_21648.1	chr2	164333464	164333664	-	1	NA	NA	NA	799	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.035000	0.502488	-8(TGGTTTTAAAGG,-,0.00)
mm_128770.1	chr15	66560860	66561060	-	1	NA	NA	NA	86	NM_172514	213068	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	0.010000	0.492537	
mm_108929.1	chr12	101082856	101083056	+	1	NA	NA	NA	505	NR_038049	319760	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	0.140000	0.761194	-44(GTCCAGAAAAGG,-,0.00)
mm_128188.1	chr15	34876119	34876319	-	1	NA	NA	NA	38170	NM_001271704	16539	Mm.71045	NM_181317	ENSMUSG00000050963	Kcns2	E130006J24Rik|Kv9.2	K+ voltage-gated channel, subfamily S, 2	protein-coding	0.005000	0.402985	
mm_125333.1	chr15	38686367	38686567	+	1	NA	NA	NA	24563	NM_025494	66335	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.005000	0.512438	
mm_37707.1	chr4	129440712	129440912	-	1	NA	NA	NA	6	NM_153541	215627	Mm.428660	NM_153541	ENSMUSG00000048485	Zbtb8b	AV220464|BC023839|BOZF1|Zbtb8	zinc finger and BTB domain containing 8b	protein-coding	0.055000	0.597015	
mm_110297.1	chr12	32487346	32487546	-	1	NA	NA	NA	108657	NM_001162903	72123	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.005000	0.407960	
mm_109424.1	chr12	110591662	110591862	+	1	NA	NA	NA	388	NR_033340	319786	Mm.129691	NR_033340		B930059L03Rik	-	RIKEN cDNA B930059L03 gene	ncRNA	0.075000	0.597015	
mm_90858.1	chr10	8852089	8852289	-	1	NA	NA	NA	33881	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.010000	0.472637	
mm_62460.1	chr7	101547769	101547969	+	1	NA	NA	NA	7933	NM_007490	11871	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0.010000	0.507463	-32(CTTTATATATGC,+,0.00)
mm_46482.1	chr5	105131858	105132058	-	1	NA	NA	NA	7594	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.407960	
mm_77224.1	chr8	115703049	115703249	-	1	NA	NA	NA	3745	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.005000	0.358209	
mm_73144.1	chr8	94984343	94984543	+	1	NA	NA	NA	44	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.010000	0.611940	
mm_14504.1	chr2	132247753	132247953	+	1	NA	NA	NA	-65	NM_001141971	70612	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.060000	0.552239	
mm_157751.1	chrX	73491957	73492157	-	1	NA	NA	NA	8456	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.035000	0.522388	
mm_18440.1	chr2	60881326	60881526	-	1	NA	NA	NA	12	NM_001141932	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.180000	0.815920	
mm_64425.1	chr7	142577329	142577529	+	1	NA	NA	NA	-282	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.015000	0.547264	
mm_102766.1	chr11	67965547	67965747	-	1	NA	NA	NA	-5	NM_027963	71860	Mm.441823	NM_027963	ENSMUSG00000020904	Cfap52	1700019F09Rik|4933417B11Rik|WDRPUH|Wdr16	cilia and flagella associated protein 52	protein-coding	0.030000	0.517413	
mm_78038.1	chr9	14276234	14276434	+	1	NA	NA	NA	33	NM_030261	75747	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.125000	0.771144	
mm_120577.1	chr14	69190607	69190807	+	1	NA	NA	NA	15	NM_010921	18095	Mm.3520	NM_010921	ENSMUSG00000022061	Nkx3-1	Bax|NKX3.1|NKX3A|Nkx-3.1|bagpipe	NK-3 transcription factor, locus 1 (Drosophila)	protein-coding	0.115000	0.706468	-57(GGCTATAAGTGC,-,0.00)
mm_45365.1	chr5	66017520	66017720	-	1	NA	NA	NA	-13335	NR_027961	231253	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.010000	0.333333	
mm_78192.1	chr9	21337746	21337946	+	1	NA	NA	NA	18	NM_152808	68682	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0.070000	0.691542	
mm_40579.1	chr5	64092898	64093098	+	1	NA	NA	NA	48	NM_025700	66681	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	0.100000	0.696517	
mm_114987.1	chr13	97494981	97495181	+	1	NA	NA	NA	12380	NR_110431	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.005000	0.507463	
mm_55243.1	chr6	52620114	52620314	-	1	NA	NA	NA	20086	NM_145567	58875	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	0.010000	0.378109	
mm_148126.1	chr18	75562098	75562298	-	1	NA	NA	NA	47553	NR_045879	100038353	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	ENSMUSG00000073534	predicted gene 10532	ncRNA	0.015000	0.502488	-34(TCCTATAAAGGC,+,0.00),-34(TCCTATAAAGGC,-,0.00)
mm_71254.1	chr8	40917296	40917496	+	1	NA	NA	NA	-8837	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.015000	0.457711	
mm_73572.1	chr8	109705553	109705753	+	1	NA	NA	NA	107	NM_001167946	75871	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	0.150000	0.741294	
mm_12814.1	chr2	80315441	80315641	+	1	NA	NA	NA	75	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.095000	0.696517	
mm_105389.1	chr11	103363578	103363778	-	1	NA	NA	NA	14	NM_183288	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.035000	0.587065	
mm_16727.1	chr2	7395922	7396122	-	1	NA	NA	NA	-22	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.025000	0.452736	
mm_136360.1	chr16	92776743	92776943	-	1	NA	NA	NA	49231	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.010000	0.512438	
mm_77256.1	chr8	115706852	115707052	-	1	NA	NA	NA	-58	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.095000	0.736318	
mm_145138.1	chr18	45559356	45559556	+	1	NA	NA	NA	-698	NM_080465	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.070000	0.626866	
mm_167943.1	chrX	128399867	128400067	-	1	NA	NA	NA	-651557	NR_045441	75274	Mm.108718	NR_045441	ENSMUSG00000086244	4930558G05Rik	-	RIKEN cDNA 4930558G05 gene	ncRNA	0.000000	0.353234	
mm_58012.1	chr6	136532488	136532688	-	1	NA	NA	NA	13737	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.020000	0.447761	85(CCTTTAATGGAA,+,0.00)
mm_48563.1	chr5	143180658	143180858	-	1	NA	NA	NA	17	NM_021326	57782	Mm.320419	NM_021326	ENSMUSG00000061898	Rbak	-	RB-associated KRAB zinc finger	protein-coding	0.090000	0.646766	
mm_42693.1	chr5	119836612	119836812	+	1	NA	NA	NA	2049	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.035000	0.522388	
mm_1737.1	chr1	75435908	75436108	+	1	NA	NA	NA	65	NM_133708	69080	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	0.055000	0.611940	
mm_59591.1	chr7	28134957	28135157	+	1	NA	NA	NA	5591	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.005000	0.427861	
mm_132444.1	chr16	35972102	35972302	+	1	NA	NA	NA	-11161	NM_008465	16646	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0.010000	0.462687	
mm_27900.1	chr3	79458721	79458921	-	1	NA	NA	NA	108858	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.030000	0.512438	
mm_122088.1	chr14	30625032	30625232	-	1	NA	NA	NA	1076	NM_011103	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.015000	0.616915	
mm_117364.1	chr13	70841610	70841810	-	1	NA	NA	NA	101	NM_172053	271127	Mm.115970	NM_172053	ENSMUSG00000049538	Adamts16	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	protein-coding	0.055000	0.606965	
mm_161190.1	chr13	50643140	50643340	+	1	NA	NA	NA	12	NM_001033770	380845	Mm.379403	NM_001033770	ENSMUSG00000096641	Gm904	Gm1135	predicted gene 904	protein-coding	0.000000	0.492537	
mm_147248.1	chr18	38419260	38419460	-	1	NA	NA	NA	385	NM_022996	65113	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.060000	0.582090	
mm_98153.1	chr11	87617058	87617258	+	1	NA	NA	NA	-6	NM_001045527	327992	Mm.390371	NM_001045527	ENSMUSG00000070345	Hsf5	Gm739|MLZ-220	heat shock transcription factor family member 5	protein-coding	0.140000	0.791045	
mm_90401.1	chr10	127325672	127325872	+	1	NA	NA	NA	2045	NM_146011	216445	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.020000	0.537313	
mm_61782.1	chr7	83755757	83755957	+	1	NA	NA	NA	-20367	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.070000	0.477612	
mm_164502.1	chr16	91946562	91946762	+	1	NA	NA	NA	-15032	NM_138597	28080	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.005000	0.313433	
mm_36098.1	chr4	58553076	58553276	-	1	NA	NA	NA	117	NM_172989	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.090000	0.721393	
mm_133398.1	chr16	84793451	84793651	+	1	NA	NA	NA	19428	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.040000	0.517413	
mm_142622.1	chr17	47016938	47017138	-	1	NA	NA	NA	-6506	NM_001177374	224826	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|ENSMUSG00000043296|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0.025000	0.417910	
mm_93191.1	chr10	94035649	94035849	-	1	NA	NA	NA	-7	NM_001304720	215008	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	0.070000	0.611940	
mm_58379.1	chr6	149130850	149131050	-	1	NA	NA	NA	-10563	NM_001252096	320204	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	0.010000	0.452736	
mm_78211.1	chr9	21499307	21499507	+	1	NA	NA	NA	-2843	NR_029585	387194		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.015000	0.552239	
mm_159670.1	chr4	154667649	154667849	-	1	NA	NA	NA	118	NM_028513	73353	Mm.30958	NM_028513	ENSMUSG00000051276	Actrt2	1700052K15Rik|Arp-T2|Arpm2	actin-related protein T2	protein-coding	0.020000	0.547264	
mm_124864.1	chr15	10177281	10177481	+	1	NA	NA	NA	143	NM_011169	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.025000	0.422886	
mm_53966.1	chr6	5977270	5977470	-	1	NA	NA	NA	23	NR_040255	72249	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA	0.030000	0.522388	
mm_108151.1	chr12	76307050	76307250	+	1	NA	NA	NA	-17741	NM_001101471	238276	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.015000	0.522388	
mm_81565.1	chr9	110417651	110417851	+	1	NA	NA	NA	-2057	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.005000	0.412935	-34(CCATTTATAGTT,+,0.00)
mm_167355.1	chr8	84197373	84197573	-	1	NA	NA	NA	-11045	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.075000	0.616915	
mm_78320.1	chr9	24503405	24503605	+	1	NA	NA	NA	-365	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.155000	0.766169	
mm_87723.1	chr10	60106249	60106449	+	1	NA	NA	NA	92	NM_052994	94214	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.050000	0.611940	
mm_57586.1	chr6	127458532	127458732	-	1	NA	NA	NA	4909	NM_181402	101187	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.000000	0.323383	
mm_153301.1	chr19	37959668	37959868	-	1	NA	NA	NA	83809	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.025000	0.507463	
mm_103100.1	chr11	69936156	69936356	-	1	NA	NA	NA	-72	NM_001347634	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.105000	0.746269	
mm_109882.1	chr12	4996706	4996906	-	1	NA	NA	NA	79453	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.005000	0.402985	-44(TTCTTTAAAAGG,-,0.00),-43(TCTTTAAAAGGC,+,0.00),-42(CTTTAAAAGGCC,+,0.00)
mm_84982.1	chr9	85710326	85710526	-	1	NA	NA	NA	38908	NM_001081282	108837	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.020000	0.452736	
mm_98666.1	chr11	96282323	96282523	+	1	NA	NA	NA	518	NM_010461	15416	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	0.050000	0.547264	
mm_34184.1	chr4	140701332	140701532	+	1	NA	NA	NA	-41	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.155000	0.756219	
mm_33118.1	chr4	124751500	124751700	+	1	NA	NA	NA	7819	NR_030480	735263		NR_030480	ENSMUSG00000076119	Mir698	Mirn698|mir-698|mmu-mir-698	microRNA 698	ncRNA	0.100000	0.671642	
mm_171430.1	chr4	135716591	135716791	-	1	NA	NA	NA	-11468	NM_178257	230828	Mm.261647	NM_178257	ENSMUSG00000037157	Il22ra1	9130219A07Rik|ENSMUSG00000073746|IL-22R|Il22r	interleukin 22 receptor, alpha 1	protein-coding	0.030000	0.507463	
mm_10840.1	chr2	24962346	24962546	+	1	NA	NA	NA	24	NM_026044	67228	Mm.389248	NM_026044	ENSMUSG00000026975	Dph7	2810443J12Rik|AW060693|Wdr85	diphthamine biosynethesis 7	protein-coding	0.070000	0.601990	
mm_77872.1	chr9	6168460	6168660	+	1	NA	NA	NA	-52	NM_027924	71785	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0.055000	0.587065	
mm_138888.1	chr17	43455544	43455744	+	1	NA	NA	NA	47129	NM_008585	17287	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	0.000000	0.378109	-77(GTATTTAAAAGA,-,0.00)
mm_105909.1	chr11	114983258	114983458	-	1	NA	NA	NA	6528	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.005000	0.472637	
mm_102355.1	chr11	58231340	58231540	-	1	NA	NA	NA	16463	NM_019440	54396	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	0.030000	0.517413	
mm_124943.1	chr15	12321441	12321641	+	1	NA	NA	NA	45	NM_025673	66629	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.125000	0.741294	
mm_130772.1	chr15	101427696	101427896	-	1	NA	NA	NA	11008	NM_001003668	406219	Mm.347934	NM_001003668	ENSMUSG00000047641	Krt87	K83|K87|Krt2-25|Krt83	keratin 87	protein-coding	0.015000	0.537313	18(CTTTATTAAAGC,-,0.00)
mm_72155.1	chr8	72161024	72161224	+	1	NA	NA	NA	-76	NM_023126	17274	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	0.075000	0.616915	
mm_26436.1	chr3	142620628	142620828	+	1	NA	NA	NA	65	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.010000	0.487562	
mm_96232.1	chr11	62551140	62551340	+	1	NA	NA	NA	69	NM_011664	22187	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.075000	0.517413	
mm_139952.1	chr17	71220107	71220307	+	1	NA	NA	NA	15553	NM_001164885	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.000000	0.248756	-44(ATGTATAAAAGA,-,0.00)
mm_147261.1	chr18	38866625	38866825	-	1	NA	NA	NA	-25731	NM_001033789	545253	Mm.244585	NM_001033789	ENSMUSG00000036452	Gm5820	EG545253	predicted gene 5820	protein-coding	0.035000	0.587065	
mm_82870.1	chr9	32423728	32423928	-	1	NA	NA	NA	29843	NM_001168354	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.010000	0.542289	
mm_115323.1	chr13	112438063	112438263	+	1	NA	NA	NA	-25907	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.020000	0.487562	-80(GTCTAGAAAAGC,-,0.00)
mm_141153.1	chr17	26506432	26506632	-	1	NA	NA	NA	1940	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.030000	0.562189	
mm_72529.1	chr8	83989372	83989572	+	1	NA	NA	NA	-8200	NM_001081415	666704	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.015000	0.532338	65(TCTTTTAAACTC,+,0.00)
mm_24027.1	chr3	87535665	87535865	+	1	NA	NA	NA	10187	NM_012051	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.060000	0.616915	
mm_110703.1	chr12	69318042	69318242	-	1	NA	NA	NA	21461	NM_027117	69554	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0.000000	0.373134	
mm_125918.1	chr15	76172001	76172201	+	1	NA	NA	NA	23609	NM_201394	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.015000	0.492537	
mm_7403.1	chr1	119053438	119053638	-	1	NA	NA	NA	81	NM_001081125	14633	Mm.273292	NM_001081125	ENSMUSG00000048402	Gli2	-	GLI-Kruppel family member GLI2	protein-coding	0.090000	0.671642	
mm_7268.1	chr1	95667476	95667676	-	1	NA	NA	NA	18	NM_009183	20452	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.070000	0.636816	
mm_19714.1	chr2	104028212	104028412	-	1	NA	NA	NA	513	NM_212433	57443	Mm.143768	NM_020593	ENSMUSG00000027180	Fbxo3	1200002G09Rik|1700026K02Rik|AI046358|Fba	F-box protein 3	protein-coding	0.080000	0.676617	
mm_35168.1	chr4	14795939	14796139	-	1	NA	NA	NA	13	NM_028499	73314	Mm.52613	NM_028499	ENSMUSG00000023151	Lrrc69	1700034K16Rik	leucine rich repeat containing 69	protein-coding	0.010000	0.393035	
mm_91417.1	chr10	32051106	32051306	-	1	NA	NA	NA	-441481	NM_001146349	268291	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.005000	0.383085	
mm_24568.1	chr3	93444196	93444396	+	1	NA	NA	NA	1966	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.085000	0.626866	
mm_99953.1	chr11	112806500	112806700	+	1	NA	NA	NA	-7592	NR_126071	100038732	Mm.65345	NR_126070	ENSMUSG00000075437	Gm11681	-	predicted gene 11681	ncRNA	0.010000	0.577114	
mm_91479.1	chr10	34233495	34233695	-	1	NA	NA	NA	-26044	NM_172508	212898	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.005000	0.512438	
mm_70495.1	chr8	12756915	12757115	+	1	NA	NA	NA	-1	NM_015804	50770	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	0.200000	0.820896	
mm_104106.1	chr11	86710840	86711040	-	1	NA	NA	NA	26859	NM_001098810	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.000000	0.298507	-43(TACTTTAAAAAG,-,0.00),-41(CTTTAAAAAGCT,+,0.00)
mm_87912.1	chr10	62340135	62340335	+	1	NA	NA	NA	186	NM_001146100	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.070000	0.706468	
mm_157333.1	chrX	36025751	36025951	-	1	NA	NA	NA	-86257	NM_133990	16164	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	0.070000	0.651741	
mm_115933.1	chr13	23585889	23586089	-	1	NA	NA	NA	-19	NM_001290530	319179	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0.025000	0.472637	
mm_51840.1	chr6	90302064	90302264	+	1	NA	NA	NA	894	NM_177738	243535	Mm.233854	NM_177738	ENSMUSG00000049694	BC048671	-	cDNA sequence BC048671	protein-coding	0.000000	0.542289	
mm_60677.1	chr7	45077553	45077753	+	1	NA	NA	NA	14560	NM_026555	52377	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0.020000	0.587065	
mm_155739.1	chrX	96166470	96166670	+	1	NA	NA	NA	70525	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.035000	0.542289	
mm_37994.1	chr4	133660664	133660864	-	1	NA	NA	NA	11883	NM_001145955	230801	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.025000	0.502488	
mm_7320.1	chr1	100180066	100180266	-	1	NA	NA	NA	407401	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0.020000	0.467662	
mm_42465.1	chr5	115450815	115451015	+	1	NA	NA	NA	-15351	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.045000	0.686567	
mm_3856.1	chr1	160972511	160972711	+	1	NA	NA	NA	-5995	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.020000	0.378109	
mm_165123.1	chr2	4822525	4822725	+	1	NA	NA	NA	-58939	NM_175400	109079	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0.020000	0.507463	
mm_67364.1	chr7	79839097	79839297	-	1	NA	NA	NA	3155	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.025000	0.606965	
mm_20724.1	chr2	136387857	136388057	-	1	NA	NA	NA	10	NM_172858	241656	Mm.131572	NM_172858	ENSMUSG00000039913	Pak7	2900083L08Rik|6430627N20|Pak5	p21 protein (Cdc42/Rac)-activated kinase 7	protein-coding	0.040000	0.597015	
mm_77638.1	chr8	124274380	124274580	-	1	NA	NA	NA	43086	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0.015000	0.487562	
mm_15096.1	chr2	153336312	153336512	+	1	NA	NA	NA	9398	NR_040318	72326	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0.005000	0.532338	
mm_161840.1	chr17	86947865	86948065	-	1	NA	NA	NA	-78	NM_029121	74915	Mm.159369	NM_029121	ENSMUSG00000053375	Atp6v1e2	4930500C14Rik|Atp6e1|E1	ATPase, H+ transporting, lysosomal V1 subunit E2	protein-coding	0.045000	0.582090	
mm_102317.1	chr11	57199291	57199491	-	1	NA	NA	NA	186345	NM_001252403	14799	Mm.4920	NM_008165	ENSMUSG00000020524	Gria1	2900051M01Rik|Glr-1|Glr1|GluA1|GluR-A|GluRA|Glur-1|Glur1|HIPA1|gluR-K1	glutamate receptor, ionotropic, AMPA1 (alpha 1)	protein-coding	0.010000	0.407960	
mm_16475.1	chr2	180732181	180732381	+	1	NA	NA	NA	6942	NM_183161	228993	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	0.010000	0.542289	
mm_2825.1	chr1	131142909	131143109	+	1	NA	NA	NA	-4775	NM_145508	226419	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.000000	0.522388	-35(CACTATAAAAGG,-,0.00)
mm_88875.1	chr10	81075427	81075627	+	1	NA	NA	NA	5444	NM_022653	50492	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	0.045000	0.582090	
mm_100144.1	chr11	115992967	115993167	+	1	NA	NA	NA	18342	NM_133663	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.015000	0.572139	
mm_4199.1	chr1	171229479	171229679	+	1	NA	NA	NA	4525	NM_013474	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.015000	0.442786	
mm_19180.1	chr2	84389705	84389905	-	1	NA	NA	NA	35461	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.000000	0.383085	
mm_109854.1	chr12	4738328	4738528	-	1	NA	NA	NA	-45	NM_029107	74855	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	0.040000	0.577114	
mm_14286.1	chr2	128802289	128802489	+	1	NA	NA	NA	-15914	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.020000	0.442786	
mm_47796.1	chr5	132478969	132479169	-	1	NA	NA	NA	63274	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.015000	0.368159	
mm_104109.1	chr11	86715639	86715839	-	1	NA	NA	NA	31658	NM_001098810	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.010000	0.383085	
mm_153155.1	chr19	34252466	34252666	-	1	NA	NA	NA	2807	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.035000	0.577114	
mm_36609.1	chr4	89128127	89128327	-	1	NA	NA	NA	-9143	NM_024433	66902	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	0.020000	0.542289	
mm_123415.1	chr14	64174522	64174722	-	1	NA	NA	NA	70299	NM_028525	73382	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	0.000000	0.432836	-98(CCTCATAGAGAC,+,0.00),-9(GAGTTTAAAGAG,-,0.00)
mm_159401.1	chr3	97216347	97216547	-	1	NA	NA	NA	10917	NM_029933	77578	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.030000	0.537313	
mm_74652.1	chr8	13470968	13471168	-	1	NA	NA	NA	23467	NM_019521	14456	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0.005000	0.388060	
mm_108666.1	chr12	86493678	86493878	+	1	NA	NA	NA	72134	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.005000	0.278607	
mm_115689.1	chr13	13954251	13954451	-	1	NA	NA	NA	-323	NM_178640	97884	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0.090000	0.611940	
mm_128237.1	chr15	36608485	36608685	-	1	NA	NA	NA	388	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.130000	0.731343	
mm_29622.1	chr3	121478684	121478884	-	1	NA	NA	NA	52243	NM_028044	71994	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0.010000	0.532338	
mm_172872.1	chr9	4266751	4266951	+	1	NA	NA	NA	42643	NR_136941	67618	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0.025000	0.457711	-33(GGGTATTTAAGC,-,0.00)
mm_35965.1	chr4	53143974	53144174	-	1	NA	NA	NA	15821	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.030000	0.542289	
mm_5506.1	chr1	37429937	37430137	-	1	NA	NA	NA	66	NM_198006	76178	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	0.095000	0.666667	
mm_171179.1	chr3	35754126	35754326	+	1	NA	NA	NA	88	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.095000	0.691542	16(GGGTAGAAAAGC,-,0.00)
mm_168586.1	chr1	173535667	173535867	-	1	NA	NA	NA	190	NM_001024721	545384	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	0.000000	0.467662	
mm_47587.1	chr5	124861851	124862051	-	1	NA	NA	NA	270	NM_144819	215707	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.155000	0.786070	
mm_16517.1	chr2	181385661	181385861	+	1	NA	NA	NA	1511	NR_045164	329584	Mm.386906	NR_045164	ENSMUSG00000085028	Slc2a4rg-ps	C430010C01|Gm14462|OTTMUSG00000016710	Slc2a4 regulator, pseudogene	pseudo	0.005000	0.412935	
mm_111995.1	chr12	110696155	110696355	-	1	NA	NA	NA	140	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.115000	0.701493	-88(CTCTATATAAGG,-,0.00),-86(CTATATAAGGCC,+,0.00)
mm_120752.1	chr14	73306073	73306273	+	1	NA	NA	NA	19618	NM_009029	19645	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb	retinoblastoma 1	protein-coding	0.005000	0.427861	
mm_125436.1	chr15	44457428	44457628	+	1	NA	NA	NA	-25	NM_138674	192190	Mm.211494	NM_138674	ENSMUSG00000038725	Pkhd1l1	AB055648|PKHDL1	polycystic kidney and hepatic disease 1-like 1	protein-coding	0.035000	0.606965	
mm_169700.1	chr15	75086715	75086915	+	1	NA	NA	NA	25134	NM_001099217	100041546	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0.020000	0.512438	
mm_44310.1	chr5	9160810	9161010	-	1	NA	NA	NA	866	NM_001110327	23857	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0.030000	0.388060	83(GTTTTTATAGTT,+,0.00)
mm_152814.1	chr19	23093578	23093778	-	1	NA	NA	NA	-47548	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.015000	0.497512	
mm_37498.1	chr4	123687172	123687372	-	1	NA	NA	NA	-2912	NM_001199136	11426	Mm.402299	NM_009600	ENSMUSG00000028649	Macf1	ABP620|Acf7|Aclp7|MACF|R74989|mKIAA0465	microtubule-actin crosslinking factor 1	protein-coding	0.160000	0.825871	
mm_31345.1	chr4	46538767	46538967	+	1	NA	NA	NA	-2726	NM_029077	74735	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	0.015000	0.512438	-33(CCCTTAAAACCA,+,0.00)
mm_12241.1	chr2	68861372	68861572	+	1	NA	NA	NA	31	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.100000	0.711443	
mm_73568.1	chr8	109614319	109614519	+	1	NA	NA	NA	-98	NM_001286454	244646	Mm.436810	NM_181544	ENSMUSG00000048827	Pkd1l3	-	polycystic kidney disease 1 like 3	protein-coding	0.040000	0.492537	-32(CTATTTAAAAGC,-,0.00)
mm_162051.1	chrX	7375919	7376119	-	1	NA	NA	NA	94	NR_026741	100270707	Mm.117112	NR_026741	ENSMUSG00000087252	Gm14379	OTTMUSG00000016482	predicted gene 14379	ncRNA	0.090000	0.691542	
mm_24188.1	chr3	88607127	88607327	+	1	NA	NA	NA	-8980	NM_001198911	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.030000	0.616915	
mm_21634.1	chr2	164278206	164278406	-	1	NA	NA	NA	1	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.000000	0.417910	-65(CCTTTTATAACT,+,0.00)
mm_30196.1	chr3	144712585	144712785	-	1	NA	NA	NA	7650	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.010000	0.388060	
mm_109445.1	chr12	110889168	110889368	+	1	NA	NA	NA	4	NM_001081057	104859	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	0.095000	0.721393	
mm_17401.1	chr2	27209841	27210041	-	1	NA	NA	NA	37362	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.015000	0.592040	
mm_71208.1	chr8	40890407	40890607	+	1	NA	NA	NA	28140	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.000000	0.447761	
mm_44105.1	chr5	149368293	149368493	+	1	NA	NA	NA	-43413	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.010000	0.457711	63(GTCCCTAAAGGC,-,0.00)
mm_39112.1	chr4	154928311	154928511	-	1	NA	NA	NA	-334	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.015000	0.507463	-58(GCTTAAAGGGGG,+,0.00)
mm_159668.1	chr4	154139863	154140063	-	1	NA	NA	NA	245	NM_011642	22062	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0.120000	0.761194	
mm_30177.1	chr3	144205087	144205287	-	1	NA	NA	NA	68	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.140000	0.771144	
mm_128811.1	chr15	67082969	67083169	-	1	NA	NA	NA	93813	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.000000	0.482587	-34(CCTTTTATAAAC,+,0.00)
mm_29887.1	chr3	131233931	131234131	-	1	NA	NA	NA	38070	NM_008212	15107	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.010000	0.492537	
mm_159125.1	chr2	71018201	71018401	-	1	NA	NA	NA	73	NM_001110512	228019	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.030000	0.522388	
mm_42301.1	chr5	114676229	114676429	+	1	NA	NA	NA	14606	NM_019821	56356	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0.020000	0.567164	
mm_163718.1	chr13	111809426	111809626	-	1	NA	NA	NA	-543	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.070000	0.616915	
mm_85149.1	chr9	95954578	95954778	-	1	NA	NA	NA	-82	NM_011916	24127	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	0.055000	0.572139	
mm_78968.1	chr9	45318901	45319101	+	1	NA	NA	NA	-99	NM_001013373	214531	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.040000	0.601990	
mm_65630.1	chr7	27545042	27545242	-	1	NA	NA	NA	8076	NM_011116	18807	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.025000	0.562189	
mm_8023.1	chr1	135105118	135105318	-	1	NA	NA	NA	58	NM_001033409	329252	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0.160000	0.791045	
mm_168721.1	chr12	109544334	109544534	+	1	NA	NA	NA	-107	NR_035440	100316809		NR_035440	ENSMUSG00000084535	Mir1906-1	Mir1906|Mirn1906|mmu-mir-1906|mmu-mir-1906-1	microRNA 1906-1	ncRNA	0.025000	0.626866	
mm_14458.1	chr2	131193172	131193372	+	1	NA	NA	NA	6324	NM_001111075	12531	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	0.030000	0.597015	
mm_90839.1	chr10	8518726	8518926	-	1	NA	NA	NA	-1	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.080000	0.696517	
mm_60375.1	chr7	44467932	44468132	+	1	NA	NA	NA	52	NM_001205070	66124	Mm.358691	NM_025368	ENSMUSG00000038695	Josd2	1110007C05Rik	Josephin domain containing 2	protein-coding	0.100000	0.636816	
mm_248.1	chr1	19212357	19212557	+	1	NA	NA	NA	403	NM_001025305	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.015000	0.477612	
mm_108622.1	chr12	85598504	85598704	+	1	NA	NA	NA	-501	NM_001205052	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.015000	0.577114	
mm_37157.1	chr4	117125964	117126164	-	1	NA	NA	NA	-339	NR_024078	78611	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0.020000	0.572139	-9(GCTTTTCGGGGC,+,0.00)
mm_114429.1	chr13	64917349	64917549	+	1	NA	NA	NA	43	NM_030047	78124	Mm.342895	NM_030047	ENSMUSG00000056223	Spata31	4930458L03Rik|Aep1|Fam75a|Spata31a|Vad1.3	spermatogenesis associated 31	protein-coding	0.005000	0.527363	
mm_157140.1	chrX	9459299	9459499	-	1	NA	NA	NA	9925	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.417910	
mm_119092.1	chr14	30892481	30892681	+	1	NA	NA	NA	6105	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.025000	0.552239	
mm_91616.1	chr10	41633770	41633970	-	1	NA	NA	NA	-27275	NM_001303469	75973	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0.005000	0.457711	89(TAGCATATAAGG,-,0.00)
mm_156399.1	chrX	139808512	139808712	+	1	NA	NA	NA	7804	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.015000	0.472637	
mm_18477.1	chr2	62412226	62412426	-	1	NA	NA	NA	-95	NM_001159543	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.015000	0.467662	
mm_163501.1	chr12	112795721	112795921	-	1	NA	NA	NA	-13154	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.055000	0.636816	
mm_50363.1	chr6	48647331	48647531	+	1	NA	NA	NA	70	NM_212486	243374	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	0.010000	0.547264	
mm_47983.1	chr5	135911452	135911652	-	1	NA	NA	NA	23089	NM_018871	22628	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.085000	0.606965	
mm_129245.1	chr15	76659617	76659817	-	1	NA	NA	NA	19	NM_001276333	54151	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0.070000	0.631841	
mm_104942.1	chr11	100117539	100117739	-	1	NA	NA	NA	2938	NM_001313949	16663	Mm.4646	NM_010662	ENSMUSG00000044041	Krt13	CK13|K13|Krt-1.13|Krt1-13	keratin 13	protein-coding	0.030000	0.552239	
mm_98696.1	chr11	96303458	96303658	+	1	NA	NA	NA	46	NM_008268	15413	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	0.045000	0.457711	
mm_84910.1	chr9	79977593	79977793	-	1	NA	NA	NA	189	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.020000	0.477612	
mm_31270.1	chr4	45341999	45342199	+	1	NA	NA	NA	-2	NM_153167	242418	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	0.125000	0.731343	
mm_72043.1	chr8	71227033	71227233	+	1	NA	NA	NA	-20185	NR_131056	330796	Mm.258257	NR_131056		Gm38415	E230016D10	predicted gene, 38415	ncRNA	0.005000	0.398010	
mm_111568.1	chr12	101809801	101810001	-	1	NA	NA	NA	9218	NM_011812	23876	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	0.030000	0.532338	
mm_46437.1	chr5	104989260	104989460	-	1	NA	NA	NA	-6643	NM_030239	27405	Mm.389663	NM_030239	ENSMUSG00000029299	Abcg3	Abcp2|Mxr2	ATP-binding cassette, sub-family G (WHITE), member 3	protein-coding	0.030000	0.562189	
mm_32112.1	chr4	98923769	98923969	+	1	NA	NA	NA	59	NM_146144	230484	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	0.150000	0.731343	
mm_14254.1	chr2	128132520	128132720	+	1	NA	NA	NA	5045	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.005000	0.402985	
mm_75246.1	chr8	39643567	39643767	-	1	NA	NA	NA	-989	NM_001113326	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.005000	0.422886	
mm_124532.1	chr14	122450987	122451187	-	1	NA	NA	NA	28	NR_033325	328479	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.105000	0.721393	-35(CGCTCTTAAAGA,-,0.00),-34(GCTCTTAAAGAG,+,0.00),-32(TCTTAAAGAGAC,+,0.00)
mm_20069.1	chr2	120404530	120404730	-	1	NA	NA	NA	-514	NM_001110496	211499	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0.020000	0.497512	
mm_39187.1	chr4	155840999	155841199	-	1	NA	NA	NA	1419	NM_024263	74761	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	0.125000	0.676617	
mm_93965.1	chr10	127288733	127288933	-	1	NA	NA	NA	185	NM_001347171	110962	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.125000	0.761194	
mm_128589.1	chr15	58113175	58113375	-	1	NA	NA	NA	21807	NM_027435	70472	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0.000000	0.393035	
mm_9809.1	chr1	181937127	181937327	-	1	NA	NA	NA	82753	NM_008680	13800	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	enabled homolog (Drosophila)	protein-coding	0.005000	0.457711	
mm_75693.1	chr8	68211940	68212140	-	1	NA	NA	NA	-64488	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.005000	0.398010	
mm_56834.1	chr6	117174730	117174930	-	1	NA	NA	NA	6295	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.010000	0.313433	
mm_161101.1	chr12	101404517	101404717	+	1	NA	NA	NA	-56	NM_173023	271036	Mm.84218	NM_173023	ENSMUSG00000047014	Catsperb	4931410B03|4932415G16Rik	catsper channel auxiliary subunit beta	protein-coding	0.000000	0.407960	
mm_113765.1	chr13	44807662	44807862	+	1	NA	NA	NA	76491	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.005000	0.398010	
mm_63336.1	chr7	126950743	126950943	+	1	NA	NA	NA	308	NM_001252566	233878	Mm.283926	NM_144926	ENSMUSG00000030683	Sez6l2	AI835913|AW121566|BSRP-A|Psk1	seizure related 6 homolog like 2	protein-coding	0.050000	0.572139	
mm_91009.1	chr10	14718110	14718310	-	1	NA	NA	NA	4	NM_029722	76743	Mm.136985	NM_029722	ENSMUSG00000019867	Gje1	AEY12|Cx23|D230044M03Rik|Gjf1|Gsfaey12	gap junction protein, epsilon 1	protein-coding	0.005000	0.407960	
mm_36714.1	chr4	98235277	98235477	-	1	NA	NA	NA	147888	NM_053157	94043	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.015000	0.442786	
mm_144753.1	chr18	35726775	35726975	+	1	NA	NA	NA	-114	NM_001033168	73449	Mm.379225	NM_001033168	ENSMUSG00000073598	1700066B19Rik	-	RIKEN cDNA 1700066B19 gene	protein-coding	0.015000	0.537313	
mm_67424.1	chr7	80340123	80340323	-	1	NA	NA	NA	-4	NM_133952	101869	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	0.070000	0.621891	
mm_25581.1	chr3	116865530	116865730	+	1	NA	NA	NA	3950	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.010000	0.412935	75(TTCCTTTTAAGC,-,0.00),77(CCTTTTAAGCAA,+,0.00)
mm_153885.1	chr19	46961786	46961986	-	1	NA	NA	NA	465	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.080000	0.686567	
mm_90226.1	chr10	121096503	121096703	+	1	NA	NA	NA	62599	NM_011915	24117	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0.020000	0.457711	-25(CTCTCTTAAAAG,-,0.00)
mm_167332.1	chr8	70699058	70699258	+	1	NA	NA	NA	1419	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.130000	0.726368	
mm_97992.1	chr11	84032935	84033135	+	1	NA	NA	NA	35322	NM_019819	56405	Mm.240885	NM_019819	ENSMUSG00000018648	Dusp14	1110014C10Rik|2310042C07Rik|D11Ertd395e|MKP-L|Mkp6	dual specificity phosphatase 14	protein-coding	0.005000	0.472637	-33(ATCTATAAATGC,-,0.00)
mm_73743.1	chr8	114205516	114205716	+	1	NA	NA	NA	-24	NM_173016	270097	Mm.334825	NM_173016	ENSMUSG00000046844	Vat1l	9430073I07|AI427515|mKIAA1576	vesicle amine transport protein 1 like	protein-coding	0.090000	0.671642	
mm_149400.1	chr19	11390202	11390402	+	1	NA	NA	NA	14814	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.005000	0.417910	
mm_98380.1	chr11	94111528	94111728	+	1	NA	NA	NA	67423	NM_001025429	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.000000	0.338308	
mm_145461.1	chr18	60245955	60246155	+	1	NA	NA	NA	27212	NM_001034859	225594	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	0.010000	0.422886	
mm_104327.1	chr11	93968162	93968362	-	1	NA	NA	NA	259	NM_008704	18102	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	0.070000	0.592040	
mm_157313.1	chrX	20961915	20962115	-	1	NA	NA	NA	-37	NM_013840	22294	Mm.34779	NM_013840	ENSMUSG00000001134	Uxt	0910002B17Rik	ubiquitously expressed transcript	protein-coding	0.080000	0.597015	
mm_72823.1	chr8	88199142	88199342	+	1	NA	NA	NA	29	NM_001164498	214627	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0.165000	0.771144	
mm_11257.1	chr2	29920683	29920883	+	1	NA	NA	NA	-14626	NM_028923	74412	Mm.275121	NM_028923	ENSMUSG00000019715	Gle1	4933405K21Rik|AA553313|Gle1l	GLE1 RNA export mediator (yeast)	protein-coding	0.015000	0.527363	
mm_43261.1	chr5	130255510	130255710	+	1	NA	NA	NA	-9	NM_178897	100929	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0.055000	0.487562	
mm_34111.1	chr4	139193220	139193420	+	1	NA	NA	NA	421	NM_001037761	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.035000	0.666667	
mm_34720.1	chr4	152159482	152159682	+	1	NA	NA	NA	715	NM_008236	15206	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hairy and enhancer of split 2 (Drosophila)	protein-coding	0.040000	0.597015	-81(CCCCCTTAAAGC,-,0.00),-80(CCCCTTAAAGCC,+,0.00)
mm_114461.1	chr13	67586280	67586480	+	1	NA	NA	NA	23327	NM_001163246	100416706	Mm.478045	NM_001163246	ENSMUSG00000058093	Zfp729b	AA987127	zinc finger protein 729b	protein-coding	0.015000	0.497512	
mm_97522.1	chr11	78500985	78501185	+	1	NA	NA	NA	1965	NM_011707	22370	Mm.3667	NM_011707	ENSMUSG00000017344	Vtn	AI256434|Vn	vitronectin	protein-coding	0.015000	0.552239	
mm_96211.1	chr11	62281412	62281612	+	1	NA	NA	NA	39	NM_029704	72795	Mm.489722	NM_028360	ENSMUSG00000042298	Ttc19	2010204O13Rik|2810460C24Rik|AI505442	tetratricopeptide repeat domain 19	protein-coding	0.145000	0.721393	
mm_122511.1	chr14	47167729	47167929	-	1	NA	NA	NA	21573	NM_008102	14528	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	0.000000	0.417910	
mm_113244.1	chr13	27348777	27348977	+	1	NA	NA	NA	3204	NM_001289919	13529	Mm.291450	NM_010088	ENSMUSG00000018259	Prl8a2	D/tPRP|DPRP|Dtprp|Ghd11|mdPRP	prolactin family 8, subfamily a, member 2	protein-coding	0.005000	0.452736	
mm_156783.1	chrX	161717409	161717609	+	1	NA	NA	NA	-44	NM_198409	24004	Mm.328503	NM_198409	ENSMUSG00000043518	Rai2	3f8	retinoic acid induced 2	protein-coding	0.120000	0.805970	
mm_136757.1	chr17	8770686	8770886	+	1	NA	NA	NA	-30959	NM_011866	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.005000	0.442786	
mm_16171.1	chr2	172546131	172546331	+	1	NA	NA	NA	-3362	NM_009335	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding	0.035000	0.572139	
mm_39224.1	chr4	156199936	156200136	-	1	NA	NA	NA	782	NM_015783	100038882	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	0.025000	0.497512	
mm_25878.1	chr3	130617474	130617674	+	1	NA	NA	NA	-1	NM_027907	71760	Mm.29125	NM_027907	ENSMUSG00000019232	Etnppl	1300019H02Rik|AI195447|Agxt2l1	ethanolamine phosphate phospholyase	protein-coding	0.010000	0.557214	-33(ACACTTAAAAGG,-,0.00)
mm_25208.1	chr3	103832611	103832811	+	1	NA	NA	NA	15	NM_001142960	229672	Mm.297245	NM_001142959	ENSMUSG00000044165	Bcl2l15	Bfk|Gm566	BCLl2-like 15	protein-coding	0.000000	0.398010	
mm_59358.1	chr7	25686903	25687103	+	1	NA	NA	NA	1	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.120000	0.830846	
mm_171265.1	chr3	85287475	85287675	+	1	NA	NA	NA	-29944	NR_040542	73283	Mm.489084	NR_040542	ENSMUSG00000099995	1700036G14Rik	-	RIKEN cDNA 1700036G14 gene	ncRNA	0.005000	0.527363	
mm_171082.1	chr3	121594184	121594384	+	1	NA	NA	NA	49201	NR_036456	100503044	Mm.65320	NM_176992	ENSMUSG00000044522	A730020M07Rik	-	RIKEN cDNA A730020M07 gene	ncRNA	0.000000	0.507463	
mm_65216.1	chr7	19698266	19698466	-	1	NA	NA	NA	32	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.040000	0.567164	
mm_148107.1	chr18	74207648	74207848	-	1	NA	NA	NA	70	NM_001164355	66468	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	0.125000	0.656716	
mm_53838.1	chr6	148354589	148354789	+	1	NA	NA	NA	33	NR_003634	66184	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	0.080000	0.636816	
mm_27778.1	chr3	73706565	73706765	-	1	NA	NA	NA	1750	NM_009738	12038	Mm.250719	NM_009738	ENSMUSG00000027792	Bche	C730038G20Rik	butyrylcholinesterase	protein-coding	0.005000	0.402985	-32(CTATTTAAAGAG,+,0.00)
mm_98701.1	chr11	96303642	96303842	+	1	NA	NA	NA	230	NM_008268	15413	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	0.075000	0.601990	
mm_9557.1	chr1	173963814	173964014	-	1	NA	NA	NA	18930	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.005000	0.373134	
mm_169945.1	chr1	66948880	66949080	-	1	NA	NA	NA	-3924	NM_021285	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.045000	0.562189	
mm_88841.1	chr10	80871744	80871944	+	1	NA	NA	NA	-7972	NM_001081688	432478	Mm.235302	NM_001081688	ENSMUSG00000059406	Tmprss9	Serase-1B	transmembrane protease, serine 9	protein-coding	0.020000	0.606965	
mm_19606.1	chr2	102568825	102569025	-	1	NA	NA	NA	18904	NM_173749	210622	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	0.000000	0.393035	-83(CCTTTTCTAGGA,+,0.00)
mm_6569.1	chr1	75191609	75191809	-	1	NA	NA	NA	301	NM_001003917	245860	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	0.130000	0.766169	
mm_98250.1	chr11	88253266	88253466	+	1	NA	NA	NA	-40677	NM_028859	74297	Mm.207320	NM_028859	ENSMUSG00000034031	Ccdc182	1700106J16Rik	coiled-coil domain containing 182	protein-coding	0.050000	0.671642	
mm_137672.1	chr17	28769662	28769862	+	1	NA	NA	NA	445	NM_011950	26415	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.035000	0.577114	
mm_125651.1	chr15	62886272	62886472	+	1	NA	NA	NA	593236	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA	0.005000	0.303483	
mm_115365.1	chr13	112993707	112993907	+	1	NA	NA	NA	-61	NM_001037914	622408	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0.105000	0.726368	
mm_45042.1	chr5	41684059	41684259	-	1	NA	NA	NA	23532	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.000000	0.398010	
mm_59323.1	chr7	25306021	25306221	+	1	NA	NA	NA	13	NM_183311	330485	Mm.260740	NM_183311	ENSMUSG00000043843	Tmem145	B930076A02Rik	transmembrane protein 145	protein-coding	0.145000	0.771144	-56(CCTTTAATCGGG,+,0.00)
mm_94156.1	chr10	128744952	128745152	-	1	NA	NA	NA	-996	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.005000	0.427861	
mm_166794.1	chr6	149188261	149188461	+	1	NA	NA	NA	351	NM_001113424	232566	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0.040000	0.492537	
mm_91104.1	chr10	19116977	19117177	-	1	NA	NA	NA	-24672	NR_038021	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.010000	0.437811	
mm_12735.1	chr2	78869397	78869597	+	1	NA	NA	NA	450	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.180000	0.830846	
mm_32982.1	chr4	120136063	120136263	+	1	NA	NA	NA	-25043	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.005000	0.567164	
mm_68617.1	chr7	116825745	116825945	-	1	NA	NA	NA	321476	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.020000	0.537313	
mm_59051.1	chr7	19403817	19404017	+	1	NA	NA	NA	187	NM_001286039	232943	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	0.120000	0.761194	
mm_154666.1	chrX	7878612	7878812	+	1	NA	NA	NA	406	NM_138606	18715	Mm.347478	NM_138606	ENSMUSG00000031155	Pim2	DXCch3|Pim-2	proviral integration site 2	protein-coding	0.080000	0.626866	
mm_16789.1	chr2	10063442	10063642	-	1	NA	NA	NA	-14933	NM_027748	209361	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0.005000	0.373134	
mm_59737.1	chr7	28813897	28814097	+	1	NA	NA	NA	3107	NM_177301	15388	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.055000	0.512438	
mm_137490.1	chr17	26948566	26948766	+	1	NA	NA	NA	-547	NR_037244	100526534		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0.185000	0.830846	
mm_16766.1	chr2	9878344	9878544	-	1	NA	NA	NA	156	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.025000	0.452736	
mm_33418.1	chr4	129984715	129984915	+	1	NA	NA	NA	-55	NM_001290714	230775	Mm.262241	NM_173071	ENSMUSG00000028782	Adgrb2	Bai2	adhesion G protein-coupled receptor B2	protein-coding	0.190000	0.850746	
mm_128854.1	chr15	71954310	71954510	-	1	NA	NA	NA	79817	NM_027174	69700	Mm.322500	NM_027174	ENSMUSG00000079022	Col22a1	2310067L16Rik|C80743	collagen, type XXII, alpha 1	protein-coding	0.015000	0.527363	
mm_69359.1	chr7	130513717	130513917	-	1	NA	NA	NA	5763	NM_001136054	11907	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0.000000	0.288557	81(GTGTATTTAAAG,-,0.00)
mm_33023.1	chr4	121093905	121094105	+	1	NA	NA	NA	4238	NM_172700	230709	Mm.34399	NM_172700	ENSMUSG00000043207	Zmpste24	A530043O15Rik|D030046F19|FACE1|Face-1|MADB|STE24|Ste24p	zinc metallopeptidase, STE24	protein-coding	0.005000	0.467662	82(GGCCCTTAAGGC,-,0.00)
mm_105602.1	chr11	106778717	106778917	-	1	NA	NA	NA	698	NR_027785	50776	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	-	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	0.020000	0.402985	
mm_168260.1	chr10	8762407	8762607	-	1	NA	NA	NA	123563	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.030000	0.487562	
mm_169543.1	chr15	101589853	101590053	-	1	NA	NA	NA	-1381	NR_002868	432985	Mm.491078	NR_002868		Gm5476	EG432985|Kb17P	type II keratin Kb17P pseudogene	pseudo	0.040000	0.527363	-29(TTCTATAAAAGT,-,0.00)
mm_67281.1	chr7	78578254	78578454	-	1	NA	NA	NA	-516	NM_182809	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	0.095000	0.656716	
mm_20641.1	chr2	132021133	132021333	-	1	NA	NA	NA	8755	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.010000	0.577114	-72(CCCTCTATAAAC,-,0.00)
mm_92997.1	chr10	86705389	86705589	-	1	NA	NA	NA	-45	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.085000	0.671642	
mm_93078.1	chr10	89443825	89444025	-	1	NA	NA	NA	42	NM_001284344	237436	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0.110000	0.656716	
mm_164167.1	chr15	74563456	74563656	+	1	NA	NA	NA	47360	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0.085000	0.706468	
mm_103894.1	chr11	83575167	83575367	-	1	NA	NA	NA	3369	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.000000	0.427861	
mm_134002.1	chr16	4789890	4790090	-	1	NA	NA	NA	-55	NM_025670	66626	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0.105000	0.701493	
mm_166356.1	chr5	121660359	121660559	-	1	NA	NA	NA	51	NM_028037	71985	Mm.45423	NM_028037	ENSMUSG00000029456	Acad10	2410021P16Rik	acyl-Coenzyme A dehydrogenase family, member 10	protein-coding	0.110000	0.651741	
mm_118176.1	chr13	106936830	106937030	-	1	NA	NA	NA	-15	NM_029665	76582	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.115000	0.636816	
mm_87681.1	chr10	59225933	59226133	+	1	NA	NA	NA	4111	NM_172939	268301	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.015000	0.323383	
mm_55933.1	chr6	84588569	84588769	-	1	NA	NA	NA	5141	NM_175475	232174	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.140000	0.771144	
mm_108668.1	chr12	86504680	86504880	+	1	NA	NA	NA	83136	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.000000	0.462687	
mm_44870.1	chr5	34513609	34513809	-	1	NA	NA	NA	270	NM_139064	231130	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0.125000	0.691542	
mm_21004.1	chr2	152343921	152344121	-	1	NA	NA	NA	39	NM_175093	228775	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	0.095000	0.656716	
mm_44623.1	chr5	25705710	25705910	-	1	NA	NA	NA	-13	NM_020570	57434	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	0.100000	0.621891	
mm_103715.1	chr11	79524258	79524458	-	1	NA	NA	NA	-596	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.000000	0.477612	28(GCCTCTAAAATG,-,0.00)
mm_38119.1	chr4	134548057	134548257	-	1	NA	NA	NA	4009	NM_029100	74777	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	0.030000	0.552239	
mm_95475.1	chr11	50850700	50850900	+	1	NA	NA	NA	115	NM_173372	108072	Mm.134265	NM_173372	ENSMUSG00000000617	Grm6	BC021919|Gm3|Gprc1f|mGluR6|nerg1|nob2|nob3|nob4	glutamate receptor, metabotropic 6	protein-coding	0.010000	0.577114	
mm_5526.1	chr1	37890275	37890475	-	1	NA	NA	NA	36	NM_026913	69028	Mm.63984	NM_026913	ENSMUSG00000026088	Mitd1	1500032H18Rik	MIT, microtubule interacting and transport, domain containing 1	protein-coding	0.075000	0.567164	
mm_34587.1	chr4	150187333	150187533	+	1	NA	NA	NA	13702	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.015000	0.457711	
mm_98731.1	chr11	96352029	96352229	+	1	NA	NA	NA	497	NM_134032	103889	Mm.281153	NM_134032	ENSMUSG00000075588	Hoxb2	AI894218|Hox-2.8|Hoxbes2	homeobox B2	protein-coding	0.070000	0.651741	
mm_131681.1	chr16	20675310	20675510	+	1	NA	NA	NA	2683	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.015000	0.572139	
mm_32690.1	chr4	115878831	115879031	+	1	NA	NA	NA	-5469	NM_001039124	654462	Mm.388913	NM_001039124	ENSMUSG00000073774	Kncn	Kino|L5	kinocilin	protein-coding	0.035000	0.437811	
mm_138077.1	chr17	33955762	33955962	+	1	NA	NA	NA	-20	NM_172620	224705	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	0.075000	0.542289	
mm_167121.1	chr7	121589318	121589518	-	1	NA	NA	NA	418	NR_102286	75793	Mm.23397	NR_102286		4933432K03Rik	1700001C18Rik|4930433G11Rik|AI428127	RIKEN cDNA 4933432K03 gene	ncRNA	0.035000	0.557214	
mm_9879.1	chr1	185451511	185451711	-	1	NA	NA	NA	-3237	NM_001033286	226781	Mm.227117	NM_001033286	ENSMUSG00000026614	Slc30a10	E130106K10Rik|Gm212	solute carrier family 30, member 10	protein-coding	0.005000	0.482587	
mm_65661.1	chr7	28140032	28140232	-	1	NA	NA	NA	10666	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.030000	0.527363	
mm_23675.1	chr3	68584068	68584268	+	1	NA	NA	NA	11800	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.020000	0.592040	
mm_158944.1	chr1	82729136	82729336	+	1	NA	NA	NA	4346	NM_001310699	75734	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	0.025000	0.447761	
mm_66061.1	chr7	30744124	30744324	-	1	NA	NA	NA	-543	NM_001290631	14447	Mm.436562	NM_008085	ENSMUSG00000061099	Gapdhs	Gapd-s|Gapds	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein-coding	0.015000	0.522388	
mm_36529.1	chr4	86581698	86581898	-	1	NA	NA	NA	4772	NR_028545	100217448	Mm.453533	NR_028545	ENSMUSG00000088958	Scarna8	MBI-57	small Cajal body-specific RNA 8	ncRNA	0.000000	0.268657	
mm_26344.1	chr3	142547277	142547477	+	1	NA	NA	NA	-12675	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.010000	0.517413	
mm_59291.1	chr7	24998610	24998810	+	1	NA	NA	NA	7227	NM_001290469	232975	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.030000	0.547264	
mm_31386.1	chr4	48042912	48043112	+	1	NA	NA	NA	-2293	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.125000	0.761194	
mm_132814.1	chr16	45171628	45171828	+	1	NA	NA	NA	12899	NM_026402	67841	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	0.020000	0.363184	85(CTTTTTATAACA,+,0.00)
mm_83248.1	chr9	42399945	42400145	-	1	NA	NA	NA	-116	NM_001324548	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.000000	0.407960	64(CTCTTTTTAAAG,-,0.00),65(TCTTTTTAAAGG,-,0.00),66(CTTTTTAAAGGA,+,0.00)
mm_70943.1	chr8	26119547	26119747	+	1	NA	NA	NA	267	NM_029965	77733	Mm.291906	NM_029965	ENSMUSG00000013878	Rnf170	6720407G21Rik|AI481227	ring finger protein 170	protein-coding	0.165000	0.786070	
mm_62294.1	chr7	99979663	99979863	+	1	NA	NA	NA	695	NM_175388	108937	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.055000	0.572139	
mm_66203.1	chr7	34233983	34234183	-	1	NA	NA	NA	-3747	NM_008155	14751	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	0.090000	0.686567	
mm_7102.1	chr1	89069900	89070100	-	1	NA	NA	NA	-462	NM_133816	98402	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.070000	0.616915	
mm_137124.1	chr17	22674307	22674507	+	1	NA	NA	NA	73259	NM_001104575	628185	Mm.390947	NM_001104575	ENSMUSG00000094921	Vmn2r112	EG628185|V2rp1	vomeronasal 2, receptor 112	protein-coding	0.015000	0.547264	
mm_64610.1	chr7	3296695	3296895	-	1	NA	NA	NA	3767	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.050000	0.592040	
mm_22565.1	chr3	10012481	10012681	+	1	NA	NA	NA	-4	NM_001272097	16592	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0.085000	0.651741	
mm_78471.1	chr9	32652375	32652575	+	1	NA	NA	NA	-43567	NM_011808	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.010000	0.467662	
mm_87417.1	chr10	50592605	50592805	+	1	NA	NA	NA	36	NM_198007	77987	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.160000	0.766169	
mm_82447.1	chr9	15306038	15306238	-	1	NA	NA	NA	29	NM_001199485	70984	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0.060000	0.606965	
mm_13180.1	chr2	93030268	93030468	+	1	NA	NA	NA	1020	NR_110333	433456	Mm.235231	NM_001002794	ENSMUSG00000075027	4631405J19Rik	-	RIKEN cDNA 4631405J19 gene	ncRNA	0.015000	0.611940	
mm_131621.1	chr16	19761866	19762066	+	1	NA	NA	NA	1732	NM_001159407	108105	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	0.005000	0.427861	
mm_160732.1	chr10	77835988	77836188	+	1	NA	NA	NA	141	NM_001024709	544710	Mm.441890	NM_001024709		Krtap10-10	EG544710	keratin associated protein 10-10	protein-coding	0.015000	0.681592	
mm_6180.1	chr1	65102991	65103191	-	1	NA	NA	NA	272	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.055000	0.611940	
mm_5306.1	chr1	22315729	22315929	-	1	NA	NA	NA	117014	NM_053270	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.000000	0.467662	
mm_90640.1	chr10	128501194	128501394	+	1	NA	NA	NA	2047	NR_131151	654440	Mm.441262	NR_131150	ENSMUSG00000097353	A430046D13Rik	-	Riken cDNA A430046D13 gene	ncRNA	0.005000	0.452736	
mm_111367.1	chr12	87200225	87200425	-	1	NA	NA	NA	-96	NM_001033475	382620	Mm.374912	NM_001033475	ENSMUSG00000034111	Tmed8	6430595O10Rik|AI447224|Gm1184|Mem1	transmembrane p24 trafficking protein 8	protein-coding	0.125000	0.716418	
mm_28954.1	chr3	100489089	100489289	-	1	NA	NA	NA	3	NM_001142952	74645	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.105000	0.756219	
mm_152676.1	chr19	15920081	15920281	-	1	NA	NA	NA	4441	NM_001205339	107272	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0.005000	0.393035	
mm_167271.1	chr8	33411070	33411270	+	1	NA	NA	NA	24845	NM_001098233	75029	Mm.159402	NM_152821	ENSMUSG00000049184	Purg	4930486B15Rik	purine-rich element binding protein G	protein-coding	0.000000	0.348259	
mm_50218.1	chr6	42349573	42349773	+	1	NA	NA	NA	-155	NM_011777	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.065000	0.666667	
mm_65190.1	chr7	19696511	19696711	-	1	NA	NA	NA	1787	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.075000	0.661692	
mm_115001.1	chr13	98263104	98263304	+	1	NA	NA	NA	128	NM_001271388	68558	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	0.080000	0.636816	
mm_12752.1	chr2	79254823	79255023	+	1	NA	NA	NA	-503	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.010000	0.492537	-70(CTCTATTTAAGA,-,0.00),-33(CTGCATAAAAGG,-,0.00)
mm_127066.1	chr15	97373316	97373516	+	1	NA	NA	NA	-126129	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.030000	0.567164	
mm_47252.1	chr5	121593681	121593881	-	1	NA	NA	NA	43	NM_009656	11669	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.040000	0.582090	
mm_111660.1	chr12	103314665	103314865	-	1	NA	NA	NA	4	NR_136894	102632488	Mm.109435	NR_136894	ENSMUSG00000100789	Gm29508	-	predicted gene 29508	ncRNA	0.025000	0.512438	
mm_144075.1	chr17	91088900	91089100	-	1	NA	NA	NA	605	NM_001346957	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.025000	0.537313	
mm_110398.1	chr12	44210000	44210200	-	1	NA	NA	NA	-32	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.115000	0.671642	-6(GGCTCTATAAGC,-,0.00)
mm_50531.1	chr6	49045505	49045705	+	1	NA	NA	NA	9087	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.015000	0.432836	
mm_18999.1	chr2	76870288	76870488	-	1	NA	NA	NA	112159	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.035000	0.527363	
mm_11339.1	chr2	30717395	30717595	+	1	NA	NA	NA	-3715	NR_037272	100526499		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.030000	0.621891	
mm_86307.1	chr9	122805327	122805527	-	1	NA	NA	NA	-120	NM_001013405	382117	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding	0.025000	0.517413	
mm_130776.1	chr15	101488017	101488217	-	1	NA	NA	NA	3186	NM_016879	53622	Mm.347934	NM_016879		Krt85	AA589597|BB007925|Hb5|Krt2-18	keratin 85	protein-coding	0.015000	0.537313	
mm_158455.1	chrX	140598488	140598688	-	1	NA	NA	NA	1934	NM_001077364	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.070000	0.497512	-7(TTTTTTAAGGCG,+,0.00)
mm_6557.1	chr1	75141424	75141624	-	1	NA	NA	NA	844	NM_026977	69171	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0.075000	0.651741	
mm_87509.1	chr10	52417500	52417700	+	1	NA	NA	NA	53	NM_030250	52014	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.130000	0.741294	
mm_163331.1	chr12	8500229	8500429	+	1	NA	NA	NA	-344	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.075000	0.646766	
mm_122753.1	chr14	54197813	54198013	-	1	NA	NA	NA	56016	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.437811	
mm_149972.1	chr19	29067140	29067340	+	1	NA	NA	NA	-61	NR_045687	100503337	Mm.103412	NR_045687		Gm9895	ENSMUSG00000052976	predicted gene 9895	ncRNA	0.020000	0.522388	
mm_9653.1	chr1	177744541	177744741	-	1	NA	NA	NA	14827	NM_027077	69428	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.025000	0.432836	-34(ACGTATAAAAAC,-,0.00)
mm_46662.1	chr5	108675565	108675765	-	1	NA	NA	NA	-300	NM_174870	231583	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0.015000	0.537313	
mm_13646.1	chr2	114054200	114054400	+	1	NA	NA	NA	-96	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.010000	0.517413	
mm_11919.1	chr2	52072223	52072423	+	1	NA	NA	NA	-514	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.025000	0.517413	
mm_111248.1	chr12	84876357	84876557	-	1	NA	NA	NA	38	NM_013589	16997	Mm.3900	NM_013589	ENSMUSG00000002020	Ltbp2	AW208642	latent transforming growth factor beta binding protein 2	protein-coding	0.075000	0.631841	
mm_88552.1	chr10	78595447	78595647	+	1	NA	NA	NA	-3583	NM_027875	71709	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	0.020000	0.512438	
mm_60501.1	chr7	44479134	44479334	+	1	NA	NA	NA	-5283	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.368159	24(GTTTTTAGAGAC,+,0.00)
mm_110374.1	chr12	40199490	40199690	-	1	NA	NA	NA	-275	NM_001033437	380755	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	0.010000	0.497512	
mm_109191.1	chr12	108554643	108554843	+	1	NA	NA	NA	23	NM_007965	14026	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.155000	0.786070	-66(CCCTCTTAGAGG,-,0.00),-65(CCTCTTAGAGGC,+,0.00)
mm_158752.1	chrX	165327343	165327543	-	1	NA	NA	NA	-462	NM_183427	237213	Mm.113877	NM_183427	ENSMUSG00000018589	Glra2	-	glycine receptor, alpha 2 subunit	protein-coding	0.035000	0.512438	
mm_45803.1	chr5	87568892	87569092	-	1	NA	NA	NA	14	NM_016771	53315	Mm.6824	NM_016771	ENSMUSG00000029273	Sult1d1	5033411P13Rik|AI987815|ST1d1|SULT-N|Sultn	sulfotransferase family 1D, member 1	protein-coding	0.010000	0.383085	
mm_58634.1	chr7	5095799	5095999	+	1	NA	NA	NA	15664	NM_001252454	13854	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0.040000	0.592040	
mm_50288.1	chr6	47453912	47454112	+	1	NA	NA	NA	-312	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.125000	0.721393	
mm_107821.1	chr12	68424404	68424604	+	1	NA	NA	NA	734682	NM_009093	20090	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0.000000	0.333333	
mm_158067.1	chrX	101213408	101213608	-	1	NA	NA	NA	9055	NM_001110311	55988	Mm.206949	NM_018875	ENSMUSG00000046032	Snx12	2610001F05Rik|AW045757|SDP8	sorting nexin 12	protein-coding	0.005000	0.512438	
mm_34629.1	chr4	150571788	150571988	+	1	NA	NA	NA	80286	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.005000	0.298507	
mm_46497.1	chr5	105132834	105133034	-	1	NA	NA	NA	6618	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.010000	0.462687	
mm_122333.1	chr14	37113920	37114120	-	1	NA	NA	NA	-3919	NM_001206684	70045	Mm.271619	NM_001206684	ENSMUSG00000096001	2610528A11Rik	AW494830	RIKEN cDNA 2610528A11 gene	protein-coding	0.005000	0.502488	
mm_72656.1	chr8	84847129	84847329	+	1	NA	NA	NA	-298	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.075000	0.597015	
mm_166193.1	chr5	35679302	35679502	-	1	NA	NA	NA	378	NM_001042615	78558	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.110000	0.706468	-87(GCCTTTAAGCGC,+,0.00)
mm_107731.1	chr12	57501149	57501349	+	1	NA	NA	NA	44872	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.015000	0.492537	
mm_86683.1	chr10	18407538	18407738	+	1	NA	NA	NA	-37	NM_173390	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.050000	0.567164	
mm_86374.1	chr9	123808949	123809149	-	1	NA	NA	NA	2572	NM_030712	80901	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.000000	0.432836	-38(GGCTATTAAAAA,-,0.00)
mm_43734.1	chr5	139791479	139791679	+	1	NA	NA	NA	43	NM_010757	17135	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0.160000	0.696517	
mm_63676.1	chr7	130531211	130531411	+	1	NA	NA	NA	-10942	NM_001271343	11907	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0.035000	0.517413	-32(TTCTATAAAAAC,-,0.00)
mm_60539.1	chr7	44480377	44480577	+	1	NA	NA	NA	-4040	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.482587	
mm_65198.1	chr7	19696763	19696963	-	1	NA	NA	NA	1535	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.100000	0.646766	
mm_45742.1	chr5	86518522	86518722	-	1	NA	NA	NA	-22	NM_177162	320454	Mm.184522	NM_177162	ENSMUSG00000079451	Tmprss11g	9930032O22Rik|Desc4	transmembrane protease, serine 11g	protein-coding	0.020000	0.402985	
mm_149480.1	chr19	11755760	11755960	+	1	NA	NA	NA	8301	NM_008118	14603	Mm.456	NM_008118	ENSMUSG00000024682	Gif	AV073125	gastric intrinsic factor	protein-coding	0.005000	0.462687	
mm_75093.1	chr8	34094264	34094464	-	1	NA	NA	NA	13450	NM_001293758	22428	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.005000	0.452736	
mm_23703.1	chr3	68761964	68762164	+	1	NA	NA	NA	70640	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.015000	0.557214	
mm_149894.1	chr19	25407001	25407201	+	1	NA	NA	NA	-98605	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.040000	0.666667	
mm_163981.1	chr14	56450443	56450643	+	1	NA	NA	NA	47846	NM_001033043	30054	Mm.287783	NM_001033043	ENSMUSG00000000365	Rnf17	MMIP-2|Mmip2|TDRD4	ring finger protein 17	protein-coding	0.010000	0.542289	
mm_138684.1	chr17	35916885	35917085	+	1	NA	NA	NA	-211	NM_001163818	52040	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	0.115000	0.626866	-34(GGGTATAAAAGA,-,0.00)
mm_28636.1	chr3	95217798	95217998	-	1	NA	NA	NA	44	NM_172512	213054	Mm.224820	NM_029885	ENSMUSG00000038766	Gabpb2	1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1	GA repeat binding protein, beta 2	protein-coding	0.070000	0.572139	
mm_151397.1	chr19	56461469	56461669	+	1	NA	NA	NA	-68	NM_001164263	226245	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	0.010000	0.502488	
mm_132193.1	chr16	32467082	32467282	+	1	NA	NA	NA	20697	NM_145932	106407	Mm.476915	NM_145932	ENSMUSG00000035699	Slc51a	AV001382|AW261577|D630035O19Rik|OSTalpha|Osta	solute carrier family 51, alpha subunit	protein-coding	0.035000	0.532338	
mm_135942.1	chr16	74303587	74303787	-	1	NA	NA	NA	38380	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.000000	0.263682	
mm_58072.1	chr6	136924092	136924292	-	1	NA	NA	NA	-2012	NM_026983	69187	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding	0.035000	0.557214	
mm_119022.1	chr14	30009031	30009231	+	1	NA	NA	NA	131	NM_001136240	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.110000	0.721393	
mm_164954.1	chr19	5460563	5460763	+	1	NA	NA	NA	56	NM_021438	58249	Mm.329656	NM_021438	ENSMUSG00000024911	Fibp	2010004G08Rik|2010005N21Rik|3010027N18Rik	fibroblast growth factor (acidic) intracellular binding protein	protein-coding	0.100000	0.616915	
mm_86230.1	chr9	120180343	120180543	-	1	NA	NA	NA	30701	NM_001039364	17433	Mm.486167	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.015000	0.407960	-29(GGTCTTTAAAGG,-,0.00),-28(GTCTTTAAAGGA,-,0.00)
mm_36695.1	chr4	96658640	96658840	-	1	NA	NA	NA	5379	NM_010007	13109	Mm.12838	NM_010007	ENSMUSG00000052520	Cyp2j5	-	cytochrome P450, family 2, subfamily j, polypeptide 5	protein-coding	0.010000	0.388060	
mm_61183.1	chr7	62348243	62348443	+	1	NA	NA	NA	66	NM_010882	17984	Mm.400253	NM_010882	ENSMUSG00000033585	Ndn	AI528698|Peg6	necdin	protein-coding	0.085000	0.621891	
mm_56053.1	chr6	86761068	86761268	-	1	NA	NA	NA	13946	NM_001331120	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.010000	0.437811	36(TCTTTTAGACCC,+,0.00)
mm_172434.1	chr7	29648459	29648659	-	1	NA	NA	NA	78456	NM_029714	76718	Mm.69030	NM_029714	ENSMUSG00000049123	Catsperg2	1700067C01Rik|CATSPERG	catsper channel auxiliary subunit gamma 2	protein-coding	0.030000	0.492537	
mm_99981.1	chr11	114668489	114668689	+	1	NA	NA	NA	46	NM_001048057	67671	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.085000	0.611940	
mm_148439.1	chr19	3948550	3948750	+	1	NA	NA	NA	-10158	NM_028545	73458	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	0.025000	0.587065	
mm_122836.1	chr14	54723672	54723872	-	1	NA	NA	NA	-11598	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.005000	0.547264	
mm_136754.1	chr17	8582302	8582502	+	1	NA	NA	NA	55601	NM_001290707	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.010000	0.432836	
mm_30477.1	chr3	154711242	154711442	-	1	NA	NA	NA	209	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.005000	0.452736	
mm_152853.1	chr19	24142811	24143011	-	1	NA	NA	NA	31229	NM_001198985	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.040000	0.582090	
mm_42560.1	chr5	117133558	117133758	+	1	NA	NA	NA	70	NM_183306	330177	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.040000	0.562189	-4(CCTCATAAGGAC,+,0.00)
mm_96097.1	chr11	60417516	60417716	+	1	NA	NA	NA	471	NM_025757	66771	Mm.29950	NM_025757	ENSMUSG00000018415	Gid4	4933439F18Rik	GID complex subunit 4, VID24 homolog	protein-coding	0.145000	0.805970	
mm_47086.1	chr5	117119787	117119987	-	1	NA	NA	NA	-242	NM_001199685	330177	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.070000	0.616915	
mm_107918.1	chr12	71048247	71048447	+	1	NA	NA	NA	32380	NM_001081195	238247	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|MmRBBP1|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.005000	0.452736	
mm_119796.1	chr14	54199878	54200078	+	1	NA	NA	NA	53951	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.025000	0.542289	
mm_167571.1	chr9	43142323	43142523	+	1	NA	NA	NA	-25853	NM_001034863	235300	Mm.261326	NM_001034863	ENSMUSG00000048503	Tmem136	AA396355|Gm184	transmembrane protein 136	protein-coding	0.000000	0.572139	
mm_68607.1	chr7	116290481	116290681	-	1	NA	NA	NA	17795	NM_001305185	233765	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.005000	0.407960	
mm_163052.1	chr11	58421038	58421238	+	1	NA	NA	NA	27	NM_027239	69864	Mm.45641	NM_027239	ENSMUSG00000013653	1810065E05Rik	AV047390	RIKEN cDNA 1810065E05 gene	protein-coding	0.005000	0.492537	-61(GGCTATAAAAGT,-,0.00)
mm_171231.1	chr3	66914449	66914649	+	1	NA	NA	NA	64262	NM_001302358	20429	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0.015000	0.507463	
mm_70348.1	chr8	4777708	4777908	+	1	NA	NA	NA	1726	NM_011369	20419	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	0.015000	0.462687	0(GGCTCTATGAGG,-,0.00)
mm_30352.1	chr3	151749798	151749998	-	1	NA	NA	NA	61	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.030000	0.492537	
mm_21527.1	chr2	163644630	163644830	-	1	NA	NA	NA	-120	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.105000	0.651741	
mm_117001.1	chr13	57426265	57426465	-	1	NA	NA	NA	481967	NM_009262	20745	Mm.379020	NM_009262	ENSMUSG00000056222	Spock1	Spock|Ticn1|testican	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	protein-coding	0.005000	0.388060	
mm_138686.1	chr17	35926330	35926530	+	1	NA	NA	NA	8541	NR_035445	100316810		NR_035445	ENSMUSG00000084751	Mir1894	Mirn1894|mmu-mir-1894	microRNA 1894	ncRNA	0.030000	0.482587	
mm_96758.1	chr11	69913943	69914143	+	1	NA	NA	NA	-149	NM_019726	56310	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953	G protein pathway suppressor 2	protein-coding	0.125000	0.676617	
mm_114997.1	chr13	97844678	97844878	+	1	NA	NA	NA	284778	NR_046157	328314	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.015000	0.492537	
mm_130450.1	chr15	98542523	98542723	-	1	NA	NA	NA	-8354	NM_001289440	69612	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	0.005000	0.542289	48(ATCTTTAAAAGT,-,0.00),49(TCTTTAAAAGTG,+,0.00)
mm_144553.1	chr18	31619404	31619604	+	1	NA	NA	NA	-9602	NM_026165	67453	Mm.23896	NM_026165	ENSMUSG00000024259	Slc25a46	1200007B05Rik|AI325987	solute carrier family 25, member 46	protein-coding	0.000000	0.412935	-27(AGCTTTTAAAGG,-,0.00),-26(GCTTTTAAAGGT,+,0.00)
mm_60308.1	chr7	44122153	44122353	+	1	NA	NA	NA	9580	NM_010114	13646	Mm.5193	NM_010114	ENSMUSG00000060177	Klk1b22	EGF-BP A|Egfbp-1|Egfbp1|Klk22|mGk-22	kallikrein 1-related peptidase b22	protein-coding	0.005000	0.527363	
mm_26422.1	chr3	142618080	142618280	+	1	NA	NA	NA	-2483	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.015000	0.422886	
mm_45643.1	chr5	76951088	76951288	-	1	NA	NA	NA	-223	NM_025939	67054	Mm.182931	NM_025939	ENSMUSG00000029247	Paics	2610511I09Rik|ADE2H1|AIRC|PAIS	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	protein-coding	0.105000	0.661692	
mm_62042.1	chr7	92235040	92235240	+	1	NA	NA	NA	170	NM_001243047	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.035000	0.502488	
mm_155993.1	chrX	106156649	106156849	+	1	NA	NA	NA	13474	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.010000	0.422886	
mm_49609.1	chr6	30747088	30747288	+	1	NA	NA	NA	5889	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.005000	0.457711	-48(GCATATATGGGC,+,0.00)
mm_118377.1	chr13	117024470	117024670	-	1	NA	NA	NA	946	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.090000	0.706468	
mm_87766.1	chr10	60293252	60293452	+	1	NA	NA	NA	8891	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.542289	
mm_135646.1	chr16	52376333	52376533	-	1	NA	NA	NA	76648	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.388060	
mm_94099.1	chr10	128559214	128559414	-	1	NA	NA	NA	6620	NM_011119	18813	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	0.010000	0.447761	
mm_133606.1	chr16	91485202	91485402	+	1	NA	NA	NA	87	NM_010508	15975	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	CD118|Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.110000	0.741294	
mm_120095.1	chr14	57999255	57999455	+	1	NA	NA	NA	-93	NM_028643	68514	Mm.26834	NM_028643	ENSMUSG00000021973	Micu2	1110008L20Rik|4833427E09Rik|AU041871|Efha1|Smhs2	mitochondrial calcium uptake 2	protein-coding	0.085000	0.601990	
mm_143168.1	chr17	57226113	57226313	-	1	NA	NA	NA	1923	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.015000	0.562189	
mm_97112.1	chr11	74661913	74662113	+	1	NA	NA	NA	12518	NM_001081158	74148	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.035000	0.572139	
mm_35943.1	chr4	53104442	53104642	-	1	NA	NA	NA	55353	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.005000	0.402985	36(CTTTTTATAGAT,+,0.00)
mm_41410.1	chr5	90787433	90787633	+	1	NA	NA	NA	1432	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.025000	0.437811	
mm_154466.1	chrM	3444	3644	-	1	NA	NA	NA	NA	NA									0.025000	0.358209	
mm_18971.1	chr2	76814263	76814463	-	1	NA	NA	NA	139048	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.467662	
mm_78742.1	chr9	41885135	41885335	+	1	NA	NA	NA	239054	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.030000	0.412935	
mm_42124.1	chr5	110898469	110898669	+	1	NA	NA	NA	18766	NM_001267622	209683	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	0.005000	0.328358	
mm_156533.1	chrX	151047219	151047419	+	1	NA	NA	NA	149	NM_008001	14163	Mm.8142	NM_008001	ENSMUSG00000025265	Fgd1	ZFYVE3	FYVE, RhoGEF and PH domain containing 1	protein-coding	0.095000	0.691542	
mm_8017.1	chr1	134955750	134955950	-	1	NA	NA	NA	90	NM_001081307	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.060000	0.641791	
mm_85708.1	chr9	108139354	108139554	-	1	NA	NA	NA	2599	NR_126077	76873	Mm.436935	NR_126077	ENSMUSG00000102224	4930447F24Rik	-	RIKEN cDNA 4930447F24 gene	ncRNA	0.045000	0.626866	
mm_88028.1	chr10	67224882	67225082	+	1	NA	NA	NA	39232	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.025000	0.422886	
mm_152098.1	chr19	6909975	6910175	-	1	NA	NA	NA	377	NM_026306	67674	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.090000	0.611940	
mm_44018.1	chr5	147343057	147343257	+	1	NA	NA	NA	-20717	NM_001039678	231903	Mm.291286	NM_001039678	ENSMUSG00000075543	Urad	EG231903|Prhoxnb	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase	protein-coding	0.010000	0.527363	
mm_21727.1	chr2	164674014	164674214	-	1	NA	NA	NA	-27	NM_001161806	629761	Mm.389336	NM_001161806	ENSMUSG00000078940	Wfdc11	-	WAP four-disulfide core domain 11	protein-coding	0.020000	0.482587	
mm_48941.1	chr6	4539397	4539597	+	1	NA	NA	NA	33879	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.030000	0.462687	-68(GTCTATTTAAGA,-,0.00)
mm_152861.1	chr19	24201875	24202075	-	1	NA	NA	NA	23051	NM_011597	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.005000	0.323383	0(CTGTTTTAAAGA,-,0.00)
mm_55417.1	chr6	65125673	65125873	-	1	NA	NA	NA	18957	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.015000	0.437811	
mm_123226.1	chr14	59629319	59629519	-	1	NA	NA	NA	4138	NM_145463	219134	Mm.275409	NM_145463	ENSMUSG00000044461	Shisa2	9430059P22Rik|MAd2|Tmem46|mShisa|shisa	shisa family member 2	protein-coding	0.015000	0.487562	
mm_82402.1	chr9	14770890	14771090	-	1	NA	NA	NA	40	NM_029306	69325	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	0.070000	0.686567	
mm_52050.1	chr6	97210699	97210899	+	1	NA	NA	NA	7	NM_022992	65106	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	0.105000	0.616915	
mm_84856.1	chr9	78489054	78489254	-	1	NA	NA	NA	-7430	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.070000	0.631841	
mm_50564.1	chr6	49047881	49048081	+	1	NA	NA	NA	11463	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.035000	0.557214	
mm_109318.1	chr12	109561504	109561704	+	1	NA	NA	NA	-2088	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.040000	0.467662	
mm_145997.1	chr18	68344400	68344600	+	1	NA	NA	NA	6897	NM_013596	17203	Mm.8003	NM_013596	ENSMUSG00000007480	Mc5r	-	melanocortin 5 receptor	protein-coding	0.020000	0.487562	
mm_161316.1	chr14	43956979	43957179	+	1	NA	NA	NA	10	NM_007448	503844	Mm.24663	NM_007448	ENSMUSG00000053961	Ang5	-	angiogenin, ribonuclease A family, member 5	protein-coding	0.005000	0.532338	
mm_171089.1	chr3	124589074	124589274	-	1	NA	NA	NA	-8083	NR_015460	384775	Mm.489851	NR_015460	ENSMUSG00000039174	1700003H04Rik	4930538K10Rik|4933400D22Rik	RIKEN cDNA 1700003H04 gene	ncRNA	0.025000	0.522388	
mm_8704.1	chr1	158822718	158822918	-	1	NA	NA	NA	134620	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding	0.000000	0.388060	
mm_54244.1	chr6	28256471	28256671	-	1	NA	NA	NA	5030	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.005000	0.388060	-88(TGCCTTATAAAG,-,0.00),-86(CCTTATAAAGAT,+,0.00)
mm_167482.1	chr8	129234270	129234470	-	1	NA	NA	NA	-324	NM_153780	72139	Mm.426514	NM_153780	ENSMUSG00000071302	2610044O15Rik8	2610044O15Rik	RIKEN cDNA 2610044O15 gene	protein-coding	0.025000	0.562189	
mm_53335.1	chr6	129236075	129236275	+	1	NA	NA	NA	1870	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.010000	0.442786	
mm_78731.1	chr9	41581208	41581408	+	1	NA	NA	NA	55	NR_015483	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.040000	0.567164	
mm_70932.1	chr8	25815111	25815311	+	1	NA	NA	NA	6737	NM_011485	20845	Mm.293314	NM_011485	ENSMUSG00000031574	Star	AV363654|D8Ertd419e|stARD1	steroidogenic acute regulatory protein	protein-coding	0.025000	0.462687	
mm_140908.1	chr17	24163620	24163820	-	1	NA	NA	NA	13	NM_172935	245847	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	0.110000	0.676617	
mm_31962.1	chr4	86930609	86930809	+	1	NA	NA	NA	56295	NM_139306	230379	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0.035000	0.542289	
mm_136184.1	chr16	88932164	88932364	-	1	NA	NA	NA	0	NM_133359	170939	Mm.188445	NM_133359	ENSMUSG00000057174	Krtap19-9b	Krtap16-10b|Krtap16.10L	keratin associated protein 19-9B	protein-coding	0.010000	0.462687	
mm_15638.1	chr2	163054520	163054720	+	1	NA	NA	NA	-15	NM_008652	17865	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	0.120000	0.691542	
mm_121136.1	chr14	101884221	101884421	+	1	NA	NA	NA	43698	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.040000	0.497512	
mm_29059.1	chr3	103778095	103778295	-	1	NA	NA	NA	13080	NM_001301306	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.020000	0.522388	
mm_130442.1	chr15	98482119	98482319	-	1	NA	NA	NA	464	NM_010679	16770	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0.025000	0.502488	
mm_4202.1	chr1	171229748	171229948	+	1	NA	NA	NA	4501	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.020000	0.507463	
mm_85442.1	chr9	104186491	104186691	-	1	NA	NA	NA	-59948	NM_145700	252837	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	0.005000	0.447761	77(CTTTATTTAAGG,-,0.00)
mm_52115.1	chr6	97915140	97915340	+	1	NA	NA	NA	-14577	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.398010	
mm_102219.1	chr11	54909687	54909887	-	1	NA	NA	NA	6933	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.015000	0.522388	
mm_148860.1	chr19	6400441	6400641	+	1	NA	NA	NA	-42	NM_011242	19395	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.035000	0.527363	
mm_65004.1	chr7	17053029	17053229	-	1	NA	NA	NA	3550	NM_016868	53417	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0.000000	0.427861	
mm_170576.1	chr19	54520501	54520701	-	1	NA	NA	NA	475419	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	0.000000	0.452736	66(GGGTCTTAAAAG,-,0.00),67(GGTCTTAAAAGA,-,0.00)
mm_6931.1	chr1	84935116	84935316	-	1	NA	NA	NA	-133	NM_027921	71781	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.045000	0.497512	83(CCCTTTTTAAAG,-,0.00),84(CCTTTTTAAAGG,-,0.00),85(CTTTTTAAAGGC,+,0.00)
mm_10841.1	chr2	24975105	24975305	+	1	NA	NA	NA	-107	NM_001031808	107733	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	0.105000	0.686567	
mm_37152.1	chr4	117121145	117121345	-	1	NA	NA	NA	4480	NR_024078	78611	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0.090000	0.686567	
mm_167470.1	chr8	126574649	126574849	-	1	NA	NA	NA	18687	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.025000	0.517413	
mm_80529.1	chr9	80164934	80165134	+	1	NA	NA	NA	0	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.115000	0.721393	
mm_140469.1	chr17	93199278	93199478	+	1	NA	NA	NA	210	NM_009625	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.040000	0.512438	
mm_110789.1	chr12	72071000	72071200	-	1	NA	NA	NA	-109	NM_181752	238252	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding	0.100000	0.666667	
mm_26295.1	chr3	142507639	142507839	+	1	NA	NA	NA	10805	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.010000	0.432836	
mm_170719.1	chr2	14739071	14739271	+	1	NA	NA	NA	18529	NR_028497	625342	Mm.484784	NR_028497		Gm13315	OTTMUSG00000011384	lactate dehydrogenase A pseudogene	pseudo	0.035000	0.527363	
mm_145766.1	chr18	65023607	65023807	+	1	NA	NA	NA	180	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.020000	0.587065	
mm_113098.1	chr13	24375940	24376140	+	1	NA	NA	NA	-39082	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.010000	0.492537	
mm_108531.1	chr12	84206816	84207016	+	1	NA	NA	NA	11965	NM_001163501	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.020000	0.462687	
mm_60444.1	chr7	44477006	44477206	+	1	NA	NA	NA	6759	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.412935	
mm_100852.1	chr11	5803647	5803847	-	1	NA	NA	NA	49	NM_018870	56012	Mm.219627	NM_018870	ENSMUSG00000020475	Pgam2	-	phosphoglycerate mutase 2	protein-coding	0.020000	0.587065	
mm_53924.1	chr6	4540628	4540828	-	1	NA	NA	NA	35110	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.015000	0.373134	-7(TTTTTTAAAGGA,+,0.00)
mm_96019.1	chr11	59542949	59543149	+	1	NA	NA	NA	363	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.025000	0.462687	-34(CTTTTAATACCA,+,0.00)
mm_68438.1	chr7	109960309	109960509	-	1	NA	NA	NA	13	NM_021494	19347	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	0.160000	0.815920	
mm_139918.1	chr17	70967783	70967983	+	1	NA	NA	NA	22633	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.025000	0.477612	
mm_129562.1	chr15	79546353	79546553	-	1	NA	NA	NA	106	NM_199079	67040	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.125000	0.676617	
mm_110701.1	chr12	69241882	69242082	-	1	NA	NA	NA	150	NM_178253	271005	Mm.180969	NM_178253	ENSMUSG00000051890	Klhdc1	-	kelch domain containing 1	protein-coding	0.130000	0.761194	
mm_41348.1	chr5	90501439	90501639	+	1	NA	NA	NA	10825	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.010000	0.398010	
mm_62904.1	chr7	117379924	117380124	+	1	NA	NA	NA	-955	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.010000	0.552239	-38(CTCCTTATAAAG,-,0.00),-36(CCTTATAAAGCA,+,0.00)
mm_43127.1	chr5	125293965	125294165	+	1	NA	NA	NA	47029	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.045000	0.547264	
mm_158785.1	chrX	167207661	167207861	-	1	NA	NA	NA	1457	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.020000	0.462687	
mm_35337.1	chr4	31970466	31970666	-	1	NA	NA	NA	6459	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.010000	0.537313	
mm_74559.1	chr8	10947733	10947933	-	1	NA	NA	NA	-19376	NR_135302	665306	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0.005000	0.457711	
mm_35167.1	chr4	14621714	14621914	-	1	NA	NA	NA	-36	NM_145947	208890	Mm.483839	NM_145947	ENSMUSG00000040569	Slc26a7	-	solute carrier family 26, member 7	protein-coding	0.015000	0.432836	3(GAATATAAAGGG,-,0.00)
mm_134044.1	chr16	5196392	5196592	-	1	NA	NA	NA	7520	NM_013796	27426	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	0.005000	0.402985	
mm_146943.1	chr18	32448316	32448516	-	1	NA	NA	NA	-70132	NR_045403	402767	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.005000	0.487562	
mm_81246.1	chr9	107975465	107975665	+	1	NA	NA	NA	-2	NM_023738	74153	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0.005000	0.517413	
mm_101411.1	chr11	28583990	28584190	-	1	NA	NA	NA	234	NM_001166661	216613	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	0.045000	0.616915	-42(CCTTTTCTGGGC,+,0.00)
mm_78332.1	chr9	25252789	25252989	+	1	NA	NA	NA	450	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.140000	0.791045	
mm_98946.1	chr11	98446748	98446948	+	1	NA	NA	NA	14	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.025000	0.532338	
mm_158492.1	chrX	142338825	142339025	-	1	NA	NA	NA	-32727	NM_021487	66240	Mm.58507	NM_021487	ENSMUSG00000090122	Kcne1l	1500015C14Rik|Kcne5|Mink	potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	protein-coding	0.025000	0.512438	
mm_27764.1	chr3	69859788	69859988	-	1	NA	NA	NA	6	NM_001164210	66183	Mm.45481	NM_133675	ENSMUSG00000043461	Sptssb	1110032A04Rik|ADMP|Sssptb	serine palmitoyltransferase, small subunit B	protein-coding	0.025000	0.512438	85(CAATCTAAAAGG,-,0.00)
mm_32341.1	chr4	104741608	104741808	+	1	NA	NA	NA	-24609	NM_133882	110382	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding	0.005000	0.402985	
mm_18607.1	chr2	68251252	68251452	-	1	NA	NA	NA	146680	NM_020283	26877	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	0.030000	0.407960	
mm_94236.1	chr11	3292213	3292413	+	1	NA	NA	NA	1856	NM_019574	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.030000	0.606965	
mm_33589.1	chr4	132563482	132563682	+	1	NA	NA	NA	-485	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.005000	0.557214	
mm_15326.1	chr2	155751255	155751455	+	1	NA	NA	NA	138	NM_011171	19124	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	0.050000	0.621891	
mm_62882.1	chr7	114768674	114768874	+	1	NA	NA	NA	23008	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	0.010000	0.477612	
mm_40051.1	chr5	33983646	33983846	+	1	NA	NA	NA	313	NM_001310546	381633	Mm.4923	NM_001033458	ENSMUSG00000070858	Gm1673	-	predicted gene 1673	protein-coding	0.085000	0.711443	
mm_137565.1	chr17	27704403	27704603	+	1	NA	NA	NA	19264	NM_178365	23969	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.010000	0.537313	
mm_3759.1	chr1	156051344	156051544	+	1	NA	NA	NA	10583	NM_022329	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.030000	0.522388	
mm_167787.1	chr9	122438024	122438224	-	1	NA	NA	NA	-39323	NR_045967	654800	Mm.393956	NR_045967		A730085K08Rik	-	RIKEN cDNA A730085K08 gene	ncRNA	0.015000	0.447761	
mm_77403.1	chr8	120537476	120537676	-	1	NA	NA	NA	167	NM_001145896	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.085000	0.681592	
mm_163690.1	chr13	99206078	99206278	+	1	NA	NA	NA	21355	NM_001004149	238803	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.010000	0.437811	
mm_64894.1	chr7	15945988	15946188	-	1	NA	NA	NA	20	NM_133831	68077	Mm.277634	NM_133831	ENSMUSG00000041560	Gltscr2	5330430H08Rik|9430097C02Rik|AU041936|AW536441|PICT-1|R74911	glioma tumor suppressor candidate region gene 2	protein-coding	0.085000	0.507463	
mm_8602.1	chr1	156034733	156034933	-	1	NA	NA	NA	-16	NM_001160019	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.000000	0.432836	
mm_1797.1	chr1	79857405	79857605	+	1	NA	NA	NA	1160	NM_009255	20720	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	0.015000	0.323383	
mm_47348.1	chr5	122560709	122560909	-	1	NA	NA	NA	53709	NM_009879	12589	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	0.025000	0.447761	
mm_83951.1	chr9	56927386	56927586	-	1	NA	NA	NA	885	NM_175483	235406	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	0.050000	0.621891	
mm_13787.1	chr2	118814115	118814315	+	1	NA	NA	NA	212	NM_026412	51944	Mm.252695	NM_026412	ENSMUSG00000027331	Knstrn	1700025D04Rik|C15orf23|D2Ertd750e|SKAP|Traf4af1	kinetochore-localized astrin/SPAG5 binding	protein-coding	0.085000	0.626866	
mm_140875.1	chr17	23809930	23810130	-	1	NA	NA	NA	6843	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.015000	0.422886	
mm_95244.1	chr11	44617596	44617796	+	1	NA	NA	NA	-404	NM_001290711	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.025000	0.422886	
mm_120556.1	chr14	68086593	68086793	+	1	NA	NA	NA	2809	NM_010910	18039	Mm.1956	NM_010910	ENSMUSG00000022055	Nefl	AI847934|CMT2E|NF-L|NF68|Nfl	neurofilament, light polypeptide	protein-coding	0.025000	0.567164	
mm_35375.1	chr4	33072843	33073043	-	1	NA	NA	NA	9831	NM_008076	14409	Mm.6227	NM_008076	ENSMUSG00000023267	Gabrr2	-	gamma-aminobutyric acid (GABA) C receptor, subunit rho 2	protein-coding	0.020000	0.537313	
mm_122121.1	chr14	31018962	31019162	-	1	NA	NA	NA	69	NM_153547	30877	Mm.88512	NM_153547	ENSMUSG00000042354	Gnl3	Ns	guanine nucleotide binding protein-like 3 (nucleolar)	protein-coding	0.120000	0.676617	
mm_75455.1	chr8	47713829	47714029	-	1	NA	NA	NA	2	NM_172407	70925	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.145000	0.721393	-34(GGTTATAAAAGG,-,0.00)
mm_56286.1	chr6	91473316	91473516	-	1	NA	NA	NA	7	NM_133928	72170	Mm.41622	NM_133928	ENSMUSG00000034203	Chchd4	2410012P20Rik|2810014D17Rik|AI838740	coiled-coil-helix-coiled-coil-helix domain containing 4	protein-coding	0.105000	0.711443	
mm_53091.1	chr6	125002768	125002968	+	1	NA	NA	NA	4258	NM_001145926	319352	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.015000	0.562189	
mm_57619.1	chr6	128200517	128200717	-	1	NA	NA	NA	-16814	NR_077223	330427	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	0.070000	0.686567	
mm_16392.1	chr2	178964109	178964309	+	1	NA	NA	NA	-450727	NM_026596	68175	Mm.158187	NM_026596		4930591A17Rik	-	RIKEN cDNA 4930591A17 gene	protein-coding	0.020000	0.477612	
mm_49028.1	chr6	4759585	4759785	+	1	NA	NA	NA	12379	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.000000	0.298507	
mm_57385.1	chr6	124819345	124819545	-	1	NA	NA	NA	-5149	NM_009415	21991	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.030000	0.572139	
mm_29552.1	chr3	116807686	116807886	-	1	NA	NA	NA	380	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.025000	0.517413	
mm_135855.1	chr16	59600919	59601119	-	1	NA	NA	NA	-35926	NR_040564	75145	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	0.165000	0.830846	
mm_56940.1	chr6	119926198	119926398	-	1	NA	NA	NA	23600	NM_001166381	19365	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.005000	0.477612	
mm_87327.1	chr10	42897778	42897978	+	1	NA	NA	NA	37366	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.005000	0.532338	
mm_82586.1	chr9	21237091	21237291	-	1	NA	NA	NA	2141	NM_016679	50868	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.085000	0.616915	
mm_90772.1	chr10	5827927	5828127	-	1	NA	NA	NA	-4084	NM_175374	108853	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	0.000000	0.373134	
mm_81140.1	chr9	106814050	106814250	+	1	NA	NA	NA	-7826	NM_001015507	321006	Mm.440089	NM_001015507	ENSMUSG00000040325	Vprbp	AI447437|B930007L02Rik|mKIAA0800	Vpr (HIV-1) binding protein	protein-coding	0.010000	0.482587	
mm_93842.1	chr10	121626264	121626464	-	1	NA	NA	NA	-48	NM_001081056	73192	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	0.155000	0.741294	
mm_291.1	chr1	23256152	23256352	+	1	NA	NA	NA	-16017	NR_029533	387225		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0.160000	0.791045	
mm_118383.1	chr13	117025848	117026048	-	1	NA	NA	NA	-432	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.055000	0.601990	72(TACTATTAAAGC,-,0.00)
mm_134055.1	chr16	5949862	5950062	-	1	NA	NA	NA	-25625	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA	0.010000	0.467662	
mm_111644.1	chr12	102673497	102673697	-	1	NA	NA	NA	11423	NR_035457	100316812		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.030000	0.562189	
mm_142153.1	chr17	36032439	36032639	-	1	NA	NA	NA	162	NM_010398	15040	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	0.045000	0.651741	
mm_78852.1	chr9	44335502	44335702	+	1	NA	NA	NA	887	NM_010436	15270	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	0.070000	0.597015	
mm_23734.1	chr3	69030175	69030375	+	1	NA	NA	NA	14467	NM_025863	66949	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.015000	0.358209	
mm_113732.1	chr13	44121208	44121408	+	1	NA	NA	NA	141	NR_045285	328235	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA	0.020000	0.537313	
mm_130131.1	chr15	90678421	90678621	-	1	NA	NA	NA	867	NM_025815	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0.020000	0.502488	
mm_33553.1	chr4	130935403	130935603	+	1	NA	NA	NA	-8882	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.015000	0.626866	
mm_152891.1	chr19	24861736	24861936	-	1	NA	NA	NA	6	NM_175013	226041	Mm.105222	NM_175013	ENSMUSG00000041731	Pgm5	4833423B07|9530034F03Rik|D830025G17|aciculin	phosphoglucomutase 5	protein-coding	0.105000	0.756219	
mm_19230.1	chr2	84677967	84678167	-	1	NA	NA	NA	107	NM_001290751	66958	Mm.371621	NM_025868	ENSMUSG00000050043	Tmx2	2310042M24Rik|AA589631|Txndc14	thioredoxin-related transmembrane protein 2	protein-coding	0.060000	0.572139	
mm_138352.1	chr17	34972596	34972796	+	1	NA	NA	NA	-7	NM_013558	15482	Mm.14287	NM_013558	ENSMUSG00000007033	Hspa1l	Hsc70t|Msh5	heat shock protein 1-like	protein-coding	0.040000	0.616915	
mm_113566.1	chr13	38320523	38320723	+	1	NA	NA	NA	-25093	NM_007556	12161	Mm.385759	NM_007556	ENSMUSG00000039004	Bmp6	D13Wsu115e|Vgr1	bone morphogenetic protein 6	protein-coding	0.035000	0.537313	
mm_23754.1	chr3	69740065	69740265	+	1	NA	NA	NA	18110	NM_133787	97112	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0.005000	0.368159	
mm_44179.1	chr5	151252327	151252527	+	1	NA	NA	NA	-62234	NM_146258	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.020000	0.462687	
mm_160375.1	chr8	40286919	40287119	-	1	NA	NA	NA	-66	NM_030610	80857	Mm.425526	NM_030610	ENSMUSG00000031603	Fgf20	-	fibroblast growth factor 20	protein-coding	0.025000	0.532338	-35(GCATATATACCG,+,0.00)
mm_86450.1	chr10	4320601	4320801	+	1	NA	NA	NA	54372	NM_031185	83397	Mm.27481	NM_031185	ENSMUSG00000038587	Akap12	AI317366|SSeCKS|Srcs5|Tsga12	A kinase (PRKA) anchor protein (gravin) 12	protein-coding	0.000000	0.427861	
mm_154379.1	chrM	11162	11362	+	1	NA	NA	NA	NA	NA									0.020000	0.373134	-39(CCACTTATAGCC,+,0.00)
mm_6778.1	chr1	84137373	84137573	-	1	NA	NA	NA	81488	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.263682	
mm_49636.1	chr6	30804938	30805138	+	1	NA	NA	NA	63739	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.527363	
mm_33071.1	chr4	123664720	123664920	+	1	NA	NA	NA	-1061	NR_136925	102633214	Mm.399387	NR_136925		Gm12925	OTTMUSG00000009214	predicted gene 12925	ncRNA	0.175000	0.825871	
mm_26626.1	chr3	152785348	152785548	+	1	NA	NA	NA	71348	NM_025662	329777	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0.020000	0.502488	
mm_58367.1	chr6	148831371	148831571	-	1	NA	NA	NA	-4	NM_001081113	320727	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	0.065000	0.631841	
mm_54664.1	chr6	39206547	39206747	-	1	NA	NA	NA	126	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.145000	0.756219	
mm_46678.1	chr5	109555470	109555670	-	1	NA	NA	NA	3423	NM_016715	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.060000	0.726368	
mm_140339.1	chr17	86809626	86809826	+	1	NA	NA	NA	55862	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.010000	0.582090	
mm_137970.1	chr17	33556272	33556472	+	1	NA	NA	NA	665	NM_053214	17916	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0.005000	0.467662	
mm_86456.1	chr10	4347679	4347879	+	1	NA	NA	NA	40329	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.050000	0.552239	
mm_138102.1	chr17	34092754	34092954	+	1	NA	NA	NA	475	NM_008206	15001	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	0.015000	0.502488	
mm_96032.1	chr11	59555820	59556020	+	1	NA	NA	NA	13234	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.005000	0.567164	
mm_84638.1	chr9	71163259	71163459	-	1	NA	NA	NA	-70	NM_022026	64008	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.000000	0.398010	
mm_15194.1	chr2	154204682	154204882	+	1	NA	NA	NA	4402	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.015000	0.552239	
mm_142062.1	chr17	35673588	35673788	-	1	NA	NA	NA	55	NM_010364	14885	Mm.10182	NM_010364	ENSMUSG00000001524	Gtf2h4	AW545633|BTF2 p52|p52	general transcription factor II H, polypeptide 4	protein-coding	0.020000	0.462687	
mm_69642.1	chr7	138885880	138886080	-	1	NA	NA	NA	23526	NM_009760	12176	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	0.025000	0.482587	
mm_50880.1	chr6	55681124	55681324	+	1	NA	NA	NA	39	NM_009717	11922	Mm.5106	NM_009717	ENSMUSG00000037984	Neurod6	Atoh2|Math-2|Math2|Nex|Nex1m|bHLHa2	neurogenic differentiation 6	protein-coding	0.005000	0.487562	
mm_155129.1	chrX	49470440	49470640	+	1	NA	NA	NA	90	NM_001081123	75404	Mm.44305	NM_001081123	ENSMUSG00000036198	Arhgap36	1100001E04Rik|rho-gap	Rho GTPase activating protein 36	protein-coding	0.060000	0.636816	
mm_149470.1	chr19	11603082	11603282	+	1	NA	NA	NA	1622	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.005000	0.497512	
mm_6478.1	chr1	74070066	74070266	-	1	NA	NA	NA	54281	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.015000	0.621891	
mm_119445.1	chr14	46832142	46832342	+	1	NA	NA	NA	-2	NM_026832	68755	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	0.080000	0.651741	
mm_30986.1	chr4	34905054	34905254	+	1	NA	NA	NA	6327	NR_040652	73696	Mm.1361	NR_040652	ENSMUSG00000085824	Platr9	2410114N07Rik	pluripotency associated transcript 9	ncRNA	0.010000	0.472637	
mm_19597.1	chr2	102400313	102400513	-	1	NA	NA	NA	487	NM_020267	80985	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	0.095000	0.661692	
mm_126905.1	chr15	89573810	89574010	+	1	NA	NA	NA	5584	NM_001277246	11434	Mm.57	NM_013455	ENSMUSG00000022622	Acr	-	acrosin prepropeptide	protein-coding	0.045000	0.606965	
mm_132672.1	chr16	42907360	42907560	+	1	NA	NA	NA	-185	NM_001285805	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.000000	0.517413	
mm_115755.1	chr13	19192643	19192843	-	1	NA	NA	NA	203070	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.502488	
mm_21355.1	chr2	157123297	157123497	-	1	NA	NA	NA	11825	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.035000	0.477612	
mm_10775.1	chr2	24304993	24305193	+	1	NA	NA	NA	13897	NM_153077	215274	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	0.005000	0.512438	-34(CACTTTAAATGC,-,0.00)
mm_62660.1	chr7	107862864	107863064	+	1	NA	NA	NA	-17233	NM_146425	258417	Mm.377488	NM_146425	ENSMUSG00000109542	Olfr470	MOR204-22	olfactory receptor 470	protein-coding	0.030000	0.422886	
mm_110583.1	chr12	56529282	56529482	-	1	NA	NA	NA	38	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.040000	0.636816	
mm_71786.1	chr8	66697316	66697516	+	1	NA	NA	NA	-6	NM_010934	18166	Mm.5112	NM_010934	ENSMUSG00000036437	Npy1r	Npyr|Y1-R	neuropeptide Y receptor Y1	protein-coding	0.030000	0.522388	-28(CGGCTTTAAGGG,-,0.00),-27(GGCTTTAAGGGG,-,0.00),-26(GCTTTAAGGGGG,+,0.00)
mm_11848.1	chr2	45201519	45201719	+	1	NA	NA	NA	-88340	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.005000	0.442786	
mm_125095.1	chr15	27571308	27571508	+	1	NA	NA	NA	-86	NR_106065	102466808		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0.030000	0.562189	
mm_172412.1	chr7	19707162	19707362	-	1	NA	NA	NA	-8074	NM_009696	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.025000	0.447761	
mm_10374.1	chr2	11725002	11725202	+	1	NA	NA	NA	19390	NM_001271500	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.000000	0.487562	
mm_103778.1	chr11	82764134	82764334	-	1	NA	NA	NA	87	NM_009839	12467	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0.080000	0.626866	
mm_170220.1	chr17	78736494	78736694	-	1	NA	NA	NA	-34	NM_011500	268980	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	0.120000	0.766169	
mm_143533.1	chr17	73936471	73936671	-	1	NA	NA	NA	13625	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.010000	0.432836	-27(TTCTATTTAAGA,-,0.00)
mm_9718.1	chr1	179803564	179803764	-	1	NA	NA	NA	351	NM_026375	226747	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.135000	0.716418	
mm_78447.1	chr9	32224189	32224389	+	1	NA	NA	NA	40	NM_177379	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.005000	0.557214	
mm_84645.1	chr9	71485435	71485635	-	1	NA	NA	NA	448	NM_178602	28015	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	0.105000	0.696517	
mm_150991.1	chr19	46595025	46595225	+	1	NA	NA	NA	-3981	NM_001177812	226178	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.010000	0.457711	
mm_146177.1	chr18	75368414	75368614	+	1	NA	NA	NA	1149	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.045000	0.532338	
mm_12986.1	chr2	90847445	90847645	+	1	NA	NA	NA	390	NM_001317242	56428	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	0.060000	0.641791	
mm_103159.1	chr11	70454368	70454568	-	1	NA	NA	NA	2537	NM_025397	66172	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0.010000	0.422886	
mm_118033.1	chr13	101692012	101692212	-	1	NA	NA	NA	518	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.010000	0.298507	
mm_169108.1	chr13	44869718	44869918	-	1	NA	NA	NA	132278	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.065000	0.507463	72(AACTTTAAATGG,-,0.00)
mm_57456.1	chr6	125166381	125166581	-	1	NA	NA	NA	-14	NM_001289726	14433	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0.015000	0.562189	16(CCCTTAAGAGGG,+,0.00)
mm_36661.1	chr4	95049734	95049934	-	1	NA	NA	NA	2388	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.000000	0.472637	
mm_129251.1	chr15	76669742	76669942	-	1	NA	NA	NA	106	NM_007989	14106	Mm.42011	NM_007989	ENSMUSG00000033837	Foxh1	Fast1|Fast2|fast-1|fast-2	forkhead box H1	protein-coding	0.030000	0.626866	
mm_88435.1	chr10	77530512	77530712	+	1	NA	NA	NA	264	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.020000	0.537313	
mm_99493.1	chr11	102835832	102836032	+	1	NA	NA	NA	-364	NM_080846	75689	Mm.44408	NM_080846	ENSMUSG00000020928	Higd1b	2310056K19Rik	HIG1 domain family, member 1B	protein-coding	0.020000	0.502488	
mm_170592.1	chr19	5802053	5802253	-	1	NA	NA	NA	519	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.050000	0.467662	
mm_141095.1	chr17	26004633	26004833	-	1	NA	NA	NA	17127	NM_153140	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.020000	0.552239	
mm_162106.1	chrX	48591845	48592045	-	1	NA	NA	NA	-184	NM_001166650	208968	Mm.293819	NM_153532	ENSMUSG00000036916	Zfp280c	BC028839|Suhw3|Zfp633|Znf280c|mKIAA1584	zinc finger protein 280C	protein-coding	0.015000	0.393035	-8(CCTTTTCAGCCC,+,0.00)
mm_77211.1	chr8	114090663	114090863	-	1	NA	NA	NA	-42811	NM_024446	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	0.015000	0.457711	4(GCTTTTAGACAA,+,0.00)
mm_991.1	chr1	58711368	58711568	+	1	NA	NA	NA	-23	NM_001289704	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.060000	0.567164	
mm_57880.1	chr6	131293063	131293263	-	1	NA	NA	NA	81	NM_001327860	66441	Mm.46623	NM_025564	ENSMUSG00000030188	Magohb	2010012C16Rik|Mago|Magoh|Magoh-rs1	mago homolog B, exon junction complex core component	protein-coding	0.120000	0.601990	
mm_140035.1	chr17	74338848	74339048	+	1	NA	NA	NA	-39	NM_001162870	50850	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	0.155000	0.781095	
mm_144976.1	chr18	37955433	37955633	+	1	NA	NA	NA	-26	NM_153793	225392	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	0.110000	0.666667	
mm_138311.1	chr17	34647564	34647764	+	1	NA	NA	NA	518	NM_017406	12915	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	0.065000	0.646766	
mm_95522.1	chr11	52122325	52122525	+	1	NA	NA	NA	-4321	NR_037221	100526467		NR_037221	ENSMUSG00000092870	Mir3061	mir-3061|mmu-mir-3061	microRNA 3061	ncRNA	0.010000	0.398010	
mm_103468.1	chr11	76479022	76479222	-	1	NA	NA	NA	-10657	NM_001291186	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.010000	0.532338	
mm_84851.1	chr9	78480659	78480859	-	1	NA	NA	NA	965	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.030000	0.477612	51(TCTTTTAAACCC,+,0.00)
mm_88149.1	chr10	69533932	69534132	+	1	NA	NA	NA	324	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.015000	0.502488	80(CCCTAAATGGAC,+,0.00)
mm_70333.1	chr8	4493383	4493583	+	1	NA	NA	NA	78	NM_026058	67260	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0.070000	0.621891	
mm_58335.1	chr6	146634454	146634654	-	1	NA	NA	NA	38	NM_026281	67623	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	0.205000	0.835821	
mm_136650.1	chr17	5898003	5898203	+	1	NA	NA	NA	-43177	NM_001113353	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.005000	0.373134	
mm_126015.1	chr15	76660245	76660445	+	1	NA	NA	NA	-137	NM_019396	54151	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0.060000	0.631841	
mm_19626.1	chr2	102813478	102813678	-	1	NA	NA	NA	88087	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.005000	0.368159	-62(CTCTTTATAGAC,+,0.00),-60(CTTTATAGACTC,+,0.00)
mm_64520.1	chr7	143841128	143841328	+	1	NA	NA	NA	18061	NM_007856	13360	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	0.020000	0.512438	
mm_69969.1	chr7	142376803	142377003	-	1	NA	NA	NA	-3157	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.020000	0.497512	
mm_35342.1	chr4	32239859	32240059	-	1	NA	NA	NA	-177476	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.100000	0.681592	
mm_60680.1	chr7	45128894	45129094	+	1	NA	NA	NA	-249	NM_009438	22121	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	0.080000	0.606965	
mm_149690.1	chr19	21271738	21271938	+	1	NA	NA	NA	-440	NM_009551	22682	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.090000	0.671642	
mm_166859.1	chr7	24435484	24435684	-	1	NA	NA	NA	10098	NM_199013	210145	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.015000	0.577114	
mm_125112.1	chr15	28081371	28081571	+	1	NA	NA	NA	-55623	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.015000	0.462687	
mm_151634.1	chr19	3930708	3930908	-	1	NA	NA	NA	-1092	NM_026316	67689	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0.035000	0.636816	
mm_44702.1	chr5	30588645	30588845	-	1	NA	NA	NA	-126	NR_040427	100502829	Mm.39944	NR_040427	ENSMUSG00000053214	Gm9899	ENSMUSG00000053214	predicted gene 9899	ncRNA	0.090000	0.711443	
mm_119337.1	chr14	40557069	40557269	+	1	NA	NA	NA	335796	NM_177816	328381	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.015000	0.407960	
mm_64937.1	chr7	16309284	16309484	-	1	NA	NA	NA	-199	NM_133234	170770	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.080000	0.696517	
mm_149321.1	chr19	10842416	10842616	+	1	NA	NA	NA	-28	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.010000	0.517413	
mm_55595.1	chr6	71632573	71632773	-	1	NA	NA	NA	13	NM_173001	104263	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0.145000	0.726368	
mm_102511.1	chr11	60777163	60777363	-	1	NA	NA	NA	102	NM_009410	21975	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0.060000	0.537313	
mm_88164.1	chr10	69706380	69706580	+	1	NA	NA	NA	172772	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.025000	0.592040	-56(CCTTTACAAGAG,+,0.00)
mm_51052.1	chr6	65631230	65631430	+	1	NA	NA	NA	-40281	NM_172399	68169	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding	0.005000	0.492537	
mm_40635.1	chr5	64898961	64899161	+	1	NA	NA	NA	33638	NM_030682	21897	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.015000	0.417910	
mm_114882.1	chr13	94223510	94223710	+	1	NA	NA	NA	61671	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.030000	0.487562	
mm_16139.1	chr2	170731799	170731999	+	1	NA	NA	NA	92	NM_001163686	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0.075000	0.691542	
mm_80118.1	chr9	70543119	70543319	+	1	NA	NA	NA	349	NM_025690	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.145000	0.781095	
mm_151811.1	chr19	5488234	5488434	-	1	NA	NA	NA	2	NM_027877	71711	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	0.040000	0.557214	
mm_19968.1	chr2	118007960	118008160	-	1	NA	NA	NA	103142	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA	0.025000	0.572139	
mm_79941.1	chr9	65908996	65909196	+	1	NA	NA	NA	86	NM_173185	214897	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	0.065000	0.666667	
mm_112883.1	chr13	20858251	20858451	+	1	NA	NA	NA	64238	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.015000	0.502488	
mm_115214.1	chr13	109441040	109441240	+	1	NA	NA	NA	116396	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.035000	0.592040	
mm_119941.1	chr14	54983271	54983471	+	1	NA	NA	NA	-7595	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.000000	0.507463	
mm_79743.1	chr9	62366825	62367025	+	1	NA	NA	NA	25582	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.015000	0.517413	
mm_122262.1	chr14	34275247	34275447	-	1	NA	NA	NA	35156	NM_029389	75698	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	0.005000	0.398010	
mm_14829.1	chr2	147046871	147047071	+	1	NA	NA	NA	33911	NM_011917	24128	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	0.000000	0.228856	
mm_126589.1	chr15	82345922	82346122	+	1	NA	NA	NA	-24	NM_026914	69029	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	0.110000	0.676617	
mm_57130.1	chr6	122602273	122602473	-	1	NA	NA	NA	71	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.050000	0.572139	-33(TTCTCTAAAAGC,-,0.00)
mm_47414.1	chr5	123137629	123137829	-	1	NA	NA	NA	-4464	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.040000	0.572139	
mm_130807.1	chr15	101712543	101712743	-	1	NA	NA	NA	248	NM_027011	110308	Mm.451847	NM_027011	ENSMUSG00000061527	Krt5	3300001P10Rik|AW146334|CK5|K5|Krt2-5|Tfip8	keratin 5	protein-coding	0.035000	0.601990	
mm_66589.1	chr7	45406877	45407077	-	1	NA	NA	NA	1017	NM_010596	16495	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	0.110000	0.686567	
mm_163617.1	chr13	54991335	54991535	+	1	NA	NA	NA	29384	NM_001206390	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.005000	0.507463	
mm_147026.1	chr18	34651652	34651852	-	1	NA	NA	NA	-16	NM_178347	52563	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	0.085000	0.582090	
mm_15504.1	chr2	158028608	158028808	+	1	NA	NA	NA	211	NM_001291135	70470	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	0.100000	0.706468	
mm_10402.1	chr2	13575472	13575672	+	1	NA	NA	NA	1261	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.035000	0.547264	
mm_30872.1	chr4	32220038	32220238	+	1	NA	NA	NA	-197297	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.020000	0.393035	86(GACTATTAGAGC,-,0.00)
mm_86365.1	chr9	123791987	123792187	-	1	NA	NA	NA	-14390	NM_030712	80901	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.015000	0.527363	
mm_68126.1	chr7	102209062	102209262	-	1	NA	NA	NA	705	NM_001287167	269966	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	0.020000	0.378109	
mm_43725.1	chr5	139543822	139544022	+	1	NA	NA	NA	24	NM_013702	22255	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	0.130000	0.671642	
mm_36756.1	chr4	101293046	101293246	-	1	NA	NA	NA	-27864	NM_146145	16451	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.090000	0.691542	
mm_76460.1	chr8	85336320	85336520	-	1	NA	NA	NA	28904	NM_175441	213435	Mm.32804	NM_175441	ENSMUSG00000031698	Mylk3	D830007F02Rik|MLCK	myosin light chain kinase 3	protein-coding	0.015000	0.522388	
mm_80296.1	chr9	73113351	73113551	+	1	NA	NA	NA	-18	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0.080000	0.582090	
mm_164452.1	chr16	52468463	52468663	-	1	NA	NA	NA	-15482	NM_001331110	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.467662	
mm_40576.1	chr5	63945518	63945718	+	1	NA	NA	NA	23279	NM_145923	100532	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0.030000	0.537313	
mm_166182.1	chr5	31614795	31614995	+	1	NA	NA	NA	944	NM_025796	66845	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0.015000	0.497512	
mm_64146.1	chr7	141259653	141259853	+	1	NA	NA	NA	6671	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.060000	0.626866	
mm_112093.1	chr12	112721642	112721842	-	1	NA	NA	NA	-432	NM_001024602	217882	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0.045000	0.616915	
mm_164805.1	chr18	27705473	27705673	+	1	NA	NA	NA	-854591	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.000000	0.338308	-39(CTCTATAAAGAC,+,0.00),-39(CTCTATAAAGAC,-,0.00)
mm_60582.1	chr7	44482567	44482767	+	1	NA	NA	NA	-1850	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.572139	
mm_120242.1	chr14	62992208	62992408	+	1	NA	NA	NA	-5769	NM_001039125	654465	Mm.424929	NM_001039125	ENSMUSG00000075573	Defb47	Defb41|EG654465	defensin beta 47	protein-coding	0.005000	0.467662	
mm_149041.1	chr19	8820133	8820333	+	1	NA	NA	NA	832	NM_001081196	68693	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0.150000	0.746269	
mm_53746.1	chr6	145211082	145211282	+	1	NA	NA	NA	35	NM_133688	67636	Mm.486359	NM_133688	ENSMUSG00000040370	Lyrm5	4930469P12Rik|AL022899|Etfrf1|Ghiso	LYR motif containing 5	protein-coding	0.080000	0.656716	
mm_4510.1	chr1	174173710	174173910	+	1	NA	NA	NA	1034	NM_011465	20739	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding	0.005000	0.338308	
mm_107226.1	chr12	26473950	26474150	+	1	NA	NA	NA	4835	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.025000	0.482587	
mm_14540.1	chr2	132793273	132793473	+	1	NA	NA	NA	12095	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.025000	0.542289	
mm_21335.1	chr2	157104257	157104457	-	1	NA	NA	NA	17302	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.010000	0.492537	
mm_141879.1	chr17	34856986	34857186	-	1	NA	NA	NA	546	NR_105938	102465587		NR_105938	ENSMUSG00000098445	Mir6972	Gm27810|mmu-mir-6972	microRNA 6972	ncRNA	0.005000	0.527363	
mm_103054.1	chr11	69817816	69818016	-	1	NA	NA	NA	524	NM_175368	108803	Mm.73263	NM_175368	ENSMUSG00000044084	4933402P03Rik	-	RIKEN cDNA 4933402P03 gene	protein-coding	0.015000	0.512438	
mm_38239.1	chr4	136180435	136180635	-	1	NA	NA	NA	-247	NM_001305399	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.045000	0.597015	
mm_33446.1	chr4	130663186	130663386	+	1	NA	NA	NA	-73	NM_030722	80912	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0.120000	0.736318	
mm_148271.1	chr18	81927124	81927324	-	1	NA	NA	NA	64856	NR_039589	100628596		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.015000	0.427861	
mm_85876.1	chr9	110989620	110989820	-	1	NA	NA	NA	-7	NM_153100	235636	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	0.000000	0.547264	
mm_119318.1	chr14	36970007	36970207	+	1	NA	NA	NA	-1343	NM_027045	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.010000	0.457711	44(GGCTCTATAAAG,-,0.00)
mm_130792.1	chr15	101689873	101690073	-	1	NA	NA	NA	4332	NM_008476	16687	Mm.302399	NM_008476	ENSMUSG00000058354	Krt6a	2310016L08Rik|Krt2-6a|Krt2-6c|MK6a|mK6[a]	keratin 6A	protein-coding	0.015000	0.378109	
mm_132907.1	chr16	48872722	48872922	+	1	NA	NA	NA	214	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.000000	0.437811	
mm_76290.1	chr8	84201546	84201746	-	1	NA	NA	NA	-6872	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.045000	0.666667	
mm_70622.1	chr8	13595024	13595224	+	1	NA	NA	NA	-32663	NM_001080781	66501	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.020000	0.542289	
mm_37148.1	chr4	117002921	117003121	-	1	NA	NA	NA	7673	NM_175244	76608	Mm.251420	NM_175244	ENSMUSG00000046861	Hectd3	1700064K09Rik|AI467540|AW743312	HECT domain containing 3	protein-coding	0.050000	0.582090	
mm_100903.1	chr11	6200078	6200278	-	1	NA	NA	NA	273	NM_173748	209586	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	0.100000	0.666667	
mm_159043.1	chr1	181051023	181051223	+	1	NA	NA	NA	-114	NM_001033819	619326	Mm.355174	NM_001033819	ENSMUSG00000038768	9130409I23Rik	-	RIKEN cDNA 9130409I23 gene	protein-coding	0.015000	0.572139	
mm_99311.1	chr11	101377107	101377307	+	1	NA	NA	NA	9491	NM_008061	14377	Mm.18064	NM_008061	ENSMUSG00000078650	G6pc	AW107337|G6Pase|G6pt|Glc-6-Pase	glucose-6-phosphatase, catalytic	protein-coding	0.020000	0.417910	
mm_166780.1	chr6	139321858	139322058	+	1	NA	NA	NA	618	NR_045149	70962	Mm.410833	NR_045149	ENSMUSG00000108128	4922502N22Rik	-	RIKEN cDNA 4922502N22 gene	ncRNA	0.010000	0.363184	
mm_38548.1	chr4	141601572	141601772	-	1	NA	NA	NA	-1748	NM_001163256	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.015000	0.582090	
mm_84491.1	chr9	66847508	66847708	-	1	NA	NA	NA	-12902	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.025000	0.547264	70(TTCTTTAAAAAG,-,0.00),72(CTTTAAAAAGCA,+,0.00)
mm_41851.1	chr5	104439245	104439445	+	1	NA	NA	NA	3153	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.045000	0.467662	
mm_34051.1	chr4	138250374	138250574	+	1	NA	NA	NA	63	NM_001099631	230863	Mm.482408	NM_001099631	ENSMUSG00000045349	Sh2d5	BC036961	SH2 domain containing 5	protein-coding	0.110000	0.761194	
mm_5009.1	chr1	192745471	192745671	+	1	NA	NA	NA	25648	NM_144881	226861	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0.035000	0.442786	
mm_131297.1	chr16	11401083	11401283	+	1	NA	NA	NA	-4465	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.020000	0.522388	
mm_83629.1	chr9	49055392	49055592	-	1	NA	NA	NA	-89	NM_012039	26951	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	0.085000	0.582090	
mm_20198.1	chr2	124490082	124490282	-	1	NA	NA	NA	-120114	NM_199238	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.000000	0.452736	-71(TCTCATAAAAGG,-,0.00)
mm_74515.1	chr8	8690387	8690587	-	1	NA	NA	NA	50	NM_176849	234023	Mm.251655	NM_176849	ENSMUSG00000040459	Arglu1	9430010O03Rik|C130008N12	arginine and glutamate rich 1	protein-coding	0.145000	0.776119	
mm_60812.1	chr7	45684281	45684481	+	1	NA	NA	NA	359	NM_001033356	243967	Mm.291240	NM_001033356	ENSMUSG00000070564	Ntn5	Gm484	netrin 5	protein-coding	0.030000	0.611940	
mm_121377.1	chr14	118787818	118788018	+	1	NA	NA	NA	47	NM_001160097	58187	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0.005000	0.343284	
mm_98297.1	chr11	90029560	90029760	+	1	NA	NA	NA	-688	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.030000	0.542289	
mm_123447.1	chr14	65149776	65149976	-	1	NA	NA	NA	-51770	NM_018788	54616	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.060000	0.656716	
mm_50879.1	chr6	55681094	55681294	+	1	NA	NA	NA	69	NM_009717	11922	Mm.5106	NM_009717	ENSMUSG00000037984	Neurod6	Atoh2|Math-2|Math2|Nex|Nex1m|bHLHa2	neurogenic differentiation 6	protein-coding	0.005000	0.497512	
mm_17520.1	chr2	29252719	29252919	-	1	NA	NA	NA	174	NR_029460	76220	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0.080000	0.701493	
mm_17726.1	chr2	32423968	32424168	-	1	NA	NA	NA	-2	NM_001290558	227731	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.025000	0.512438	
mm_142581.1	chr17	46704851	46705051	-	1	NA	NA	NA	51	NM_009358	21770	Mm.295009	NM_009358	ENSMUSG00000059409	Ppp2r5d	B'delta|TEG-271|Tex271	protein phosphatase 2, regulatory subunit B', delta	protein-coding	0.120000	0.701493	
mm_2894.1	chr1	131910591	131910791	+	1	NA	NA	NA	233	NM_001145804	98415	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.125000	0.756219	
mm_35078.1	chr4	6990699	6990899	-	1	NA	NA	NA	-76	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.140000	0.736318	
mm_148938.1	chr19	7039500	7039700	+	1	NA	NA	NA	426	NM_016737	20867	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	0.110000	0.721393	
mm_58028.1	chr6	136661891	136662091	-	1	NA	NA	NA	-98	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.040000	0.611940	
mm_22987.1	chr3	33799700	33799900	+	1	NA	NA	NA	-383	NM_027619	67120	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	0.065000	0.597015	-66(GCGCTTTAAAGC,-,0.00),-64(GCTTTAAAGCTC,+,0.00),-30(CCCTCTAAAAGG,-,0.00),-29(CCTCTAAAAGGC,+,0.00)
mm_90336.1	chr10	127084484	127084684	+	1	NA	NA	NA	5677	NM_001033263	216439	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.000000	0.447761	
mm_156553.1	chrX	151800695	151800895	+	1	NA	NA	NA	-2487	NM_021523	59026	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	0.035000	0.621891	
mm_150961.1	chr19	46454599	46454799	+	1	NA	NA	NA	-46949	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.020000	0.592040	
mm_112312.1	chr12	114910395	114910595	-	1	NA	NA	NA	-396801	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.432836	
mm_47385.1	chr5	122990424	122990624	-	1	NA	NA	NA	1170	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.025000	0.482587	
mm_152117.1	chr19	6985353	6985553	-	1	NA	NA	NA	2198	NM_001185164	22340	Mm.15607	NM_011697	ENSMUSG00000024962	Vegfb	VEGF-B|Vrf	vascular endothelial growth factor B	protein-coding	0.060000	0.671642	
mm_167141.1	chr7	127890870	127891070	-	1	NA	NA	NA	0	NM_001081268	330657	Mm.425491	NM_001081268	ENSMUSG00000044139	Prss53	Pol3s|mFLJ00289	protease, serine 53	protein-coding	0.015000	0.611940	
mm_64275.1	chr7	141808443	141808643	+	1	NA	NA	NA	19532	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.010000	0.557214	
mm_154104.1	chr19	57079590	57079790	-	1	NA	NA	NA	39334	NM_001347459	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.000000	0.402985	-2(TCCTTTATAGAA,+,0.00)
mm_142993.1	chr17	56300161	56300361	-	1	NA	NA	NA	25	NM_029799	76920	Mm.329132	NM_029799	ENSMUSG00000073380	Arrdc5	1700013E09Rik	arrestin domain containing 5	protein-coding	0.040000	0.592040	
mm_20498.1	chr2	130393171	130393371	-	1	NA	NA	NA	4358	NM_019696	56264	Mm.112701	NM_019696	ENSMUSG00000027408	Cpxm1	AA986902|Cpx-1|Cpx1|Cpxm	carboxypeptidase X 1 (M14 family)	protein-coding	0.005000	0.467662	
mm_59455.1	chr7	27195054	27195254	+	1	NA	NA	NA	606	NM_001046637	53607	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0.015000	0.507463	
mm_10346.1	chr2	11667469	11667669	+	1	NA	NA	NA	24777	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.010000	0.383085	-1(CCCTTGAAAAAG,-,0.00)
mm_86865.1	chr10	21993851	21994051	+	1	NA	NA	NA	61	NM_001161850	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.080000	0.567164	
mm_60990.1	chr7	49160682	49160882	+	1	NA	NA	NA	-85407	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.020000	0.537313	
mm_150558.1	chr19	39330198	39330398	+	1	NA	NA	NA	43213	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.010000	0.398010	
mm_41175.1	chr5	88007950	88008150	+	1	NA	NA	NA	5525	NM_011422	20599	Mm.261199	NM_011422	ENSMUSG00000029280	Smr3a	AA589601|MSG1|MSG3|Smr1|Smr3	submaxillary gland androgen regulated protein 3A	protein-coding	0.005000	0.447761	
mm_90789.1	chr10	7063005	7063205	-	1	NA	NA	NA	-39920	NM_001033391	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.015000	0.427861	
mm_106698.1	chr12	3496272	3496472	+	1	NA	NA	NA	69515	NM_172421	75302	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2 (Drosophila)	protein-coding	0.015000	0.482587	
mm_164408.1	chr16	36276972	36277172	+	1	NA	NA	NA	-76	NM_001082543	20861	Mm.327618	NM_001082543	ENSMUSG00000071562	Stfa1	Stefin-3|Stf-3|Stf1|Stf3|Stfa3	stefin A1	protein-coding	0.005000	0.477612	44(CCTTTAAAACCC,+,0.00)
mm_164076.1	chr14	121787394	121787594	-	1	NA	NA	NA	10240	NM_134074	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.040000	0.467662	
mm_115331.1	chr13	112467413	112467613	+	1	NA	NA	NA	3443	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.035000	0.552239	48(GCTTTTAAACAG,+,0.00)
mm_124419.1	chr14	118052050	118052250	-	1	NA	NA	NA	96	NM_010024	13190	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	0.015000	0.432836	
mm_106868.1	chr12	8009956	8010156	+	1	NA	NA	NA	32379	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.422886	
mm_108311.1	chr12	79547668	79547868	+	1	NA	NA	NA	250417	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.020000	0.472637	
mm_45454.1	chr5	67754888	67755088	-	1	NA	NA	NA	92443	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.000000	0.417910	
mm_33265.1	chr4	127243722	127243922	+	1	NA	NA	NA	38	NM_030252	80284	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	0.090000	0.711443	
mm_157702.1	chrX	60892583	60892783	-	1	NA	NA	NA	747	NM_009237	20675	Mm.35784	NM_009237	ENSMUSG00000045179	Sox3	Sox-3	SRY (sex determining region Y)-box 3	protein-coding	0.140000	0.746269	
mm_120739.1	chr14	73173703	73173903	+	1	NA	NA	NA	31018	NR_033185	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.040000	0.572139	
mm_71052.1	chr8	33697374	33697574	+	1	NA	NA	NA	-34440	NM_001167921	68153	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	0.010000	0.303483	
mm_171988.1	chr5	93804211	93804411	+	1	NA	NA	NA	-132848	NM_001164285	381654	Mm.326591	NM_001164284	ENSMUSG00000070686	C87414	-	expressed sequence C87414	protein-coding	0.025000	0.482587	
mm_169494.1	chr14	75845294	75845494	+	1	NA	NA	NA	138	NM_009429	22070	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	0.135000	0.736318	-96(CTCTATATGAGG,-,0.00)
mm_79238.1	chr9	50504192	50504392	+	1	NA	NA	NA	513	NR_040714	69631	Mm.414996	NR_040714	ENSMUSG00000101304	Plet1os	2310014F07Rik	placenta expressed transcript 1, opposite strand	ncRNA	0.005000	0.492537	
mm_1985.1	chr1	87098988	87099188	+	1	NA	NA	NA	2518	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.015000	0.527363	
mm_102447.1	chr11	59787140	59787340	-	1	NA	NA	NA	-18	NR_110894	194908	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	0.075000	0.646766	
mm_36020.1	chr4	56990000	56990200	-	1	NA	NA	NA	291	NM_001142965	230235	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	0.135000	0.751244	
mm_154256.1	chr19	60766866	60767066	-	1	NA	NA	NA	7419	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.040000	0.487562	-60(GTTTTTAAAGCT,+,0.00)
mm_7422.1	chr1	119648538	119648738	-	1	NA	NA	NA	362	NM_001113416	226352	Mm.253156	NM_145506	ENSMUSG00000026383	Epb41l5	1700030C16Rik|AL022914|BE37|E230025E14Rik|Epb4.1l5|Lulu1|NBL5	erythrocyte membrane protein band 4.1 like 5	protein-coding	0.145000	0.766169	
mm_142377.1	chr17	44735539	44735739	-	1	NA	NA	NA	537	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.075000	0.666667	
mm_98784.1	chr11	96855163	96855363	+	1	NA	NA	NA	4870	NR_029562	387170		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0.030000	0.567164	
mm_91578.1	chr10	40129490	40129690	-	1	NA	NA	NA	12664	NM_028247	72472	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.005000	0.427861	
mm_9245.1	chr1	171345514	171345714	-	1	NA	NA	NA	31	NM_001242580	27045	Mm.12915	NM_012049	ENSMUSG00000013997	Nit1	AI255805|ESTM30|W57327	nitrilase 1	protein-coding	0.060000	0.611940	
mm_16275.1	chr2	173737398	173737598	+	1	NA	NA	NA	-73	NM_019806	56491	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.125000	0.696517	
mm_135154.1	chr16	35857905	35858105	-	1	NA	NA	NA	13377	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.030000	0.477612	
mm_15505.1	chr2	158028677	158028877	+	1	NA	NA	NA	280	NM_001291135	70470	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	0.105000	0.736318	
mm_109450.1	chr12	111039267	111039467	+	1	NA	NA	NA	-431	NM_198023	217864	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0.120000	0.726368	
mm_107674.1	chr12	54135064	54135264	+	1	NA	NA	NA	68710	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	0.025000	0.492537	
mm_140512.1	chr17	5591559	5591759	-	1	NA	NA	NA	99059	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.010000	0.502488	53(GCTCTTATGGGG,+,0.00)
mm_21898.1	chr2	166156046	166156246	-	1	NA	NA	NA	-463	NM_028072	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.050000	0.467662	
mm_133160.1	chr16	70407758	70407958	+	1	NA	NA	NA	93909	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.000000	0.353234	
mm_62373.1	chr7	100706513	100706713	+	1	NA	NA	NA	-89	NM_178764	319604	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0.095000	0.701493	
mm_168790.1	chr12	19288457	19288657	+	1	NA	NA	NA	774047	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.120000	0.741294	
mm_80246.1	chr9	72747910	72748110	+	1	NA	NA	NA	-59264	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.050000	0.422886	
mm_151060.1	chr19	47228710	47228910	+	1	NA	NA	NA	-33	NM_001163480	18011	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.030000	0.611940	
mm_97626.1	chr11	78958606	78958806	+	1	NA	NA	NA	26218	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.000000	0.457711	
mm_112502.1	chr13	8279034	8279234	+	1	NA	NA	NA	76268	NM_052977	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding	0.005000	0.402985	
mm_3884.1	chr1	161037508	161037708	+	1	NA	NA	NA	-484	NR_028543	100217446		NR_028543	ENSMUSG00000064968	Snord47	MBII-96	small nucleolar RNA, C/D box 47	snoRNA	0.010000	0.383085	
mm_110869.1	chr12	73715703	73715903	-	1	NA	NA	NA	131007	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.015000	0.512438	
mm_74087.1	chr8	122557771	122557971	+	1	NA	NA	NA	-6542	NM_001037298	234839	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	0.015000	0.597015	
mm_65702.1	chr7	28377524	28377724	-	1	NA	NA	NA	1604	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.025000	0.592040	
mm_56688.1	chr6	113979906	113980106	-	1	NA	NA	NA	-45325	NM_001347365	11941	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.010000	0.427861	
mm_142655.1	chr17	47611397	47611597	-	1	NA	NA	NA	-5	NM_016859	53414	Mm.472101	NM_016859	ENSMUSG00000023988	Bysl	Bys|Enp1	bystin-like	protein-coding	0.090000	0.582090	
mm_96261.1	chr11	62648571	62648771	+	1	NA	NA	NA	7	NM_175002	216829	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	0.165000	0.845771	
mm_95695.1	chr11	54326949	54327149	+	1	NA	NA	NA	12146	NM_001033599	216739	Mm.267478	NM_144823	ENSMUSG00000020333	Acsl6	A330035H04Rik|AW050338|Facl6|LACS|Lacsl|mKIAA0837	acyl-CoA synthetase long-chain family member 6	protein-coding	0.030000	0.532338	
mm_66197.1	chr7	34229353	34229553	-	1	NA	NA	NA	883	NM_008155	14751	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	0.015000	0.527363	
mm_95734.1	chr11	54626573	54626773	+	1	NA	NA	NA	30527	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.015000	0.402985	
mm_96691.1	chr11	69591357	69591557	+	1	NA	NA	NA	11098	NM_001127233	22059	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.015000	0.542289	-73(CGCCATAAAAAA,-,0.00)
mm_105160.1	chr11	101591684	101591884	-	1	NA	NA	NA	9542	NM_144830	217203	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.015000	0.432836	
mm_142164.1	chr17	36145833	36146033	-	1	NA	NA	NA	915	NR_033517	675325	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	0.075000	0.651741	
mm_86826.1	chr10	21152741	21152941	+	1	NA	NA	NA	8143	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.000000	0.422886	
mm_77798.1	chr9	3031006	3031206	+	1	NA	NA	NA	7637	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.005000	0.343284	
mm_116362.1	chr13	40730635	40730835	-	1	NA	NA	NA	-278	NM_001122948	21418	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.075000	0.517413	
mm_64223.1	chr7	141613742	141613942	+	1	NA	NA	NA	-95	NR_040337	100036523	Mm.398994	NR_040337	ENSMUSG00000097170	Gm16982	-	predicted gene, 16982	ncRNA	0.010000	0.577114	
mm_4221.1	chr1	171331026	171331226	+	1	NA	NA	NA	1981	NM_011615	21945	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	0.005000	0.333333	
mm_22170.1	chr2	173147952	173148152	-	1	NA	NA	NA	-5021	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.015000	0.512438	-28(ATCTTTTAAAGC,-,0.00),-27(TCTTTTAAAGCC,+,0.00)
mm_89101.1	chr10	84556323	84556523	+	1	NA	NA	NA	-3085	NR_040658	442847	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	0.010000	0.343284	4(TTCTTTTAAAAG,-,0.00),6(CTTTTAAAAGAA,+,0.00)
mm_2164.1	chr1	88259018	88259218	+	1	NA	NA	NA	10290	NR_040291	78605	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.000000	0.437811	1(GCCCAGAAAAAG,-,0.00)
mm_38590.1	chr4	141822160	141822360	-	1	NA	NA	NA	3745	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.020000	0.597015	
mm_107522.1	chr12	40465090	40465290	+	1	NA	NA	NA	19137	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.010000	0.457711	-72(GCACATAAAAAG,-,0.00)
mm_119578.1	chr14	50839711	50839911	+	1	NA	NA	NA	30743	NM_009351	21745	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	0.020000	0.517413	
mm_43312.1	chr5	134932309	134932509	+	1	NA	NA	NA	36	NM_001347490	79565	Mm.34235	NM_024479	ENSMUSG00000040557	Wbscr27	AW492986|BC002286	Williams Beuren syndrome chromosome region 27 (human)	protein-coding	0.075000	0.651741	
mm_103093.1	chr11	69920967	69921167	-	1	NA	NA	NA	18	NM_001166596	276770	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.145000	0.741294	
mm_9321.1	chr1	171652779	171652979	-	1	NA	NA	NA	158	NM_144539	75345	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	0.010000	0.502488	
mm_110684.1	chr12	67193862	67194062	-	1	NA	NA	NA	28587	NM_001193266	320772	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	0.000000	0.467662	
mm_3544.1	chr1	150407230	150407430	+	1	NA	NA	NA	-14275	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.015000	0.373134	
mm_57654.1	chr6	128485520	128485720	-	1	NA	NA	NA	41100	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.025000	0.442786	31(CCCCATAAAAGT,-,0.00)
mm_24286.1	chr3	89231721	89231921	+	1	NA	NA	NA	2765	NM_013605	17829	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	0.035000	0.592040	
mm_22615.1	chr3	14578650	14578850	+	1	NA	NA	NA	79	NM_007892	13559	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	0.165000	0.781095	
mm_171857.1	chr5	20694627	20694827	-	1	NA	NA	NA	187397	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.025000	0.482587	-28(CTTTAAATACCC,+,0.00)
mm_42286.1	chr5	114374696	114374896	+	1	NA	NA	NA	5709	NM_001159941	330171	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	0.005000	0.542289	
mm_22682.1	chr3	16183771	16183971	+	1	NA	NA	NA	688	NM_001145919	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.050000	0.537313	
mm_106312.1	chr11	118302315	118302515	-	1	NA	NA	NA	-12171	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.010000	0.407960	-72(GCCCTTATAGGG,+,0.00),-72(GCCCTTATAGGG,-,0.00),-70(CCTTATAGGGAA,+,0.00)
mm_72035.1	chr8	70776772	70776972	+	1	NA	NA	NA	10	NR_029440	72093	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	0.115000	0.676617	
mm_51394.1	chr6	78371077	78371277	+	1	NA	NA	NA	292	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.010000	0.482587	
mm_100353.1	chr11	118428401	118428601	+	1	NA	NA	NA	44	NM_001204129	56745	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.025000	0.606965	
mm_112205.1	chr12	113426832	113427032	-	1	NA	NA	NA	-62633	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.427861	
mm_173238.1	chrX	84443003	84443203	-	1	NA	NA	NA	-605192	NM_001314038	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.005000	0.472637	
mm_91304.1	chr10	24916740	24916940	-	1	NA	NA	NA	6176	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.015000	0.422886	83(TCTTTTATATGC,+,0.00)
mm_71385.1	chr8	45999205	45999405	+	1	NA	NA	NA	545	NM_001039562	654824	Mm.334517	NM_001039562	ENSMUSG00000050914	Ankrd37	-	ankyrin repeat domain 37	protein-coding	0.030000	0.557214	
mm_128528.1	chr15	54847252	54847452	-	1	NA	NA	NA	72794	NM_015744	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.005000	0.432836	
mm_52793.1	chr6	121264028	121264228	+	1	NA	NA	NA	18222	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.015000	0.402985	
mm_104144.1	chr11	87034310	87034510	-	1	NA	NA	NA	39727	NM_025638	66569	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	0.005000	0.323383	39(GTCTTTAAAAAA,-,0.00)
mm_128938.1	chr15	74716552	74716752	-	1	NA	NA	NA	1813	NM_028216	72373	Mm.46395	NM_028216	ENSMUSG00000022598	Psca	2210408B04Rik	prostate stem cell antigen	protein-coding	0.015000	0.631841	
mm_111884.1	chr12	108203861	108204061	-	1	NA	NA	NA	24223	NM_009832	12454	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	0.005000	0.383085	
mm_103439.1	chr11	75937600	75937800	-	1	NA	NA	NA	-11809	NM_001291159	380714	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	0.000000	0.527363	
mm_129218.1	chr15	76538612	76538812	-	1	NA	NA	NA	34	NM_013909	30840	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	0.085000	0.646766	
mm_169529.1	chr14	91805626	91805826	-	1	NA	NA	NA	1678835	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA	0.010000	0.398010	
mm_22928.1	chr3	31149658	31149858	+	1	NA	NA	NA	-162	NM_008770	18417	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.055000	0.597015	
mm_111111.1	chr12	80960405	80960605	-	1	NA	NA	NA	7574	NM_011387	20493	Mm.486361	NM_011387	ENSMUSG00000021135	Slc10a1	Ntcp	solute carrier family 10 (sodium/bile acid cotransporter family), member 1	protein-coding	0.025000	0.467662	
mm_135066.1	chr16	34199343	34199543	-	1	NA	NA	NA	-232440	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.025000	0.527363	
mm_133302.1	chr16	77594102	77594302	+	1	NA	NA	NA	-4734	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.020000	0.447761	
mm_110109.1	chr12	26443095	26443295	-	1	NA	NA	NA	13257	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.005000	0.417910	
mm_87645.1	chr10	58394271	58394471	+	1	NA	NA	NA	-2	NM_001193303	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.025000	0.542289	
mm_7820.1	chr1	132007831	132008031	-	1	NA	NA	NA	326	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.140000	0.741294	
mm_90403.1	chr10	127326017	127326217	+	1	NA	NA	NA	2390	NM_146011	216445	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.040000	0.621891	
mm_126831.1	chr15	88864104	88864304	+	1	NA	NA	NA	2010	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.015000	0.547264	
mm_25681.1	chr3	122173647	122173847	+	1	NA	NA	NA	-71810	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.025000	0.447761	
mm_9350.1	chr1	172068670	172068870	-	1	NA	NA	NA	-11174	NM_010916	18071	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	0.015000	0.522388	
mm_169964.1	chr1	69969031	69969231	-	1	NA	NA	NA	17516	NM_025728	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	0.040000	0.532338	
mm_75286.1	chr8	41041508	41041708	-	1	NA	NA	NA	323	NM_001005865	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.040000	0.537313	
mm_62076.1	chr7	92839775	92839975	+	1	NA	NA	NA	34357	NM_001080995	74041	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	0.000000	0.338308	
mm_166191.1	chr5	34000834	34001034	+	1	NA	NA	NA	4950	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.050000	0.601990	
mm_172444.1	chr7	29965541	29965741	-	1	NA	NA	NA	-13748	NM_178384	72723	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77	zinc finger protein 74	protein-coding	0.045000	0.507463	
mm_58847.1	chr7	16842995	16843195	+	1	NA	NA	NA	30	NM_178900	101540	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.070000	0.621891	
mm_164610.1	chr17	31152711	31152911	+	1	NA	NA	NA	59	NR_110502	102631757	Mm.373036	NR_110502	ENSMUSG00000086010	LOC102631757	-	uncharacterized LOC102631757	ncRNA	0.020000	0.487562	
mm_64308.1	chr7	141863649	141863849	+	1	NA	NA	NA	24677	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.010000	0.537313	
mm_86501.1	chr10	6851620	6851820	+	1	NA	NA	NA	63144	NM_001039652	18390	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0.020000	0.373134	-38(GCTCTTAGGGCC,+,0.00)
mm_25021.1	chr3	98037341	98037541	+	1	NA	NA	NA	23903	NM_010928	18129	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.020000	0.457711	
mm_158255.1	chrX	108765322	108765522	-	1	NA	NA	NA	68933	NM_001081477	382236	Mm.100112	NM_001081477	ENSMUSG00000063663	Brwd3	Brodl|D030064D06Rik|Gm596	bromodomain and WD repeat domain containing 3	protein-coding	0.000000	0.427861	
mm_9312.1	chr1	171643262	171643462	-	1	NA	NA	NA	-1462	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.000000	0.348259	
mm_40706.1	chr5	65862552	65862752	+	1	NA	NA	NA	-917	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.010000	0.512438	
mm_125310.1	chr15	37754342	37754542	+	1	NA	NA	NA	37558	NM_001170866	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.025000	0.467662	-34(CTGTATAAAAAC,-,0.00)
mm_119975.1	chr14	55560404	55560604	+	1	NA	NA	NA	-419	NM_001199009	28199	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.085000	0.641791	
mm_167386.1	chr8	94749830	94750030	+	1	NA	NA	NA	4246	NM_009137	20299	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	0.015000	0.572139	
mm_76496.1	chr8	86686641	86686841	-	1	NA	NA	NA	35172	NM_001168591	66887	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding	0.010000	0.557214	
mm_121376.1	chr14	118594318	118594518	+	1	NA	NA	NA	-1946	NR_105815	102465208		NR_105815	ENSMUSG00000098433	Mir6391	Gm27914|mmu-mir-6391	microRNA 6391	ncRNA	0.025000	0.532338	-32(CTCTTTAAAAGG,-,0.00),-31(TCTTTAAAAGGG,+,0.00),-30(CTTTAAAAGGGG,+,0.00)
mm_148147.1	chr18	77462092	77462292	-	1	NA	NA	NA	102944	NM_001164504	225743	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0.020000	0.547264	
mm_86349.1	chr9	123632380	123632580	-	1	NA	NA	NA	85	NM_011731	22599	Mm.41963	NM_011731	ENSMUSG00000025243	Slc6a20b	AA986306|Sit1|Slc6a20|XT3|Xtrp3	solute carrier family 6 (neurotransmitter transporter), member 20B	protein-coding	0.020000	0.532338	
mm_43709.1	chr5	139377599	139377799	+	1	NA	NA	NA	2	NR_033147	320197	Mm.474295	NM_177097	ENSMUSG00000044197	D830046C22Rik	-	RIKEN cDNA D830046C22 gene	ncRNA	0.035000	0.567164	
mm_46523.1	chr5	105346384	105346584	-	1	NA	NA	NA	-8	NR_132129	634650	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	0.000000	0.477612	-37(TCACATAAAAGG,-,0.00)
mm_12981.1	chr2	90783146	90783346	+	1	NA	NA	NA	502	NM_178755	271813	Mm.61146	NM_178755	ENSMUSG00000040812	Agbl2	4930524K04|A430081C19Rik|CCP2	ATP/GTP binding protein-like 2	protein-coding	0.060000	0.582090	6(CCTTTTCTGCGG,+,0.00)
mm_132187.1	chr16	32430888	32431088	+	1	NA	NA	NA	-32	NM_001163159	13026	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	0.105000	0.671642	
mm_43289.1	chr5	134176258	134176458	+	1	NA	NA	NA	409	NM_033572	94254	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0.065000	0.641791	
mm_119041.1	chr14	30570867	30571067	+	1	NA	NA	NA	-1182	NR_037237	100526475		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0.025000	0.477612	
mm_81370.1	chr9	108825950	108826150	+	1	NA	NA	NA	-270	NM_080437	107934	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	0.100000	0.671642	
mm_106946.1	chr12	8771253	8771453	+	1	NA	NA	NA	-43	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.060000	0.681592	
mm_74825.1	chr8	23162867	23163067	-	1	NA	NA	NA	9696	NM_029002	74561	Mm.290028	NM_029002	ENSMUSG00000063672	Nkx6-3	9130417I07Rik|Nkx6.3	NK6 homeobox 3	protein-coding	0.030000	0.477612	
mm_63315.1	chr7	126872260	126872460	+	1	NA	NA	NA	10388	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	0.055000	0.656716	
mm_153151.1	chr19	34252358	34252558	-	1	NA	NA	NA	2915	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.035000	0.542289	
mm_134789.1	chr16	24013304	24013504	-	1	NA	NA	NA	-24792	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.000000	0.422886	
mm_71089.1	chr8	34809434	34809634	+	1	NA	NA	NA	1924	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.045000	0.462687	
mm_37166.1	chr4	117156091	117156291	-	1	NA	NA	NA	-59	NM_009098	20116	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	0.090000	0.641791	
mm_112840.1	chr13	20829261	20829461	+	1	NA	NA	NA	35248	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.020000	0.487562	63(AAGTATAAAAGG,-,0.00)
mm_119246.1	chr14	33923242	33923442	+	1	NA	NA	NA	-245	NM_145741	14560	Mm.432071	NM_145741	ENSMUSG00000021943	Gdf10	Bmp3b	growth differentiation factor 10	protein-coding	0.110000	0.766169	
mm_41873.1	chr5	104508474	104508674	+	1	NA	NA	NA	222	NM_001166581	100042165	Mm.482189	NM_001166581	ENSMUSG00000079065	BC005561	-	cDNA sequence BC005561	protein-coding	0.185000	0.796020	
mm_68101.1	chr7	102016033	102016233	-	1	NA	NA	NA	2022	NM_010531	16068	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.025000	0.557214	
mm_142662.1	chr17	47694644	47694844	-	1	NA	NA	NA	-8	NM_001290337	381104	Mm.392206	NM_001290337	ENSMUSG00000079444	Prickle4	Gm939	prickle planar cell polarity protein 4	protein-coding	0.075000	0.671642	
mm_82770.1	chr9	26923041	26923241	-	1	NA	NA	NA	-60	NM_001281475	382064	Mm.335028	NM_001177509	ENSMUSG00000079644	Gm1110	-	predicted gene 1110	protein-coding	0.035000	0.527363	
mm_106745.1	chr12	3913072	3913272	+	1	NA	NA	NA	21428	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.015000	0.442786	
mm_1465.1	chr1	69759753	69759953	+	1	NA	NA	NA	-67117	NM_029160	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	0.030000	0.442786	40(CGCTAGAAAAGA,-,0.00)
mm_67262.1	chr7	75776516	75776716	-	1	NA	NA	NA	-71722	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.005000	0.467662	55(CTCTTAAAAGCC,+,0.00)
mm_20622.1	chr2	131859647	131859847	-	1	NA	NA	NA	0	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	0.025000	0.512438	-34(GCCTTTATAAAC,+,0.00),-34(GCCTTTATAAAC,-,0.00),-32(CTTTATAAACCC,+,0.00)
mm_44841.1	chr5	34186959	34187159	-	1	NA	NA	NA	651	NM_010753	17122	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.090000	0.636816	78(GCTCTTAGACCC,+,0.00)
mm_46221.1	chr5	98943696	98943896	-	1	NA	NA	NA	89381	NM_001310677	110075	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0.005000	0.452736	78(CCTTTTAGGGGT,+,0.00)
mm_76620.1	chr8	91708402	91708602	-	1	NA	NA	NA	93152	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.025000	0.447761	73(GCTTTTATACGT,+,0.00)
mm_3156.1	chr1	135155223	135155423	+	1	NA	NA	NA	8489	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.015000	0.572139	
mm_15755.1	chr2	164275855	164276055	+	1	NA	NA	NA	2352	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.010000	0.402985	
mm_72923.1	chr8	91082373	91082573	+	1	NA	NA	NA	12416	NM_001282000	19651	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	retinoblastoma-like 2	protein-coding	0.040000	0.482587	
mm_37592.1	chr4	126533310	126533510	-	1	NA	NA	NA	48	NM_153177	76850	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	0.170000	0.800995	
mm_96325.1	chr11	64435227	64435427	+	1	NA	NA	NA	-5	NM_178870	15478	Mm.340214	NM_178870	ENSMUSG00000047759	Hs3st3a1	3Ost3a|Hs3st3a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding	0.070000	0.681592	
mm_9029.1	chr1	166503686	166503886	-	1	NA	NA	NA	-6198	NM_001164306	226601	Mm.475593	NM_001164306	ENSMUSG00000086056	Gm4846	EG226601|Fmo13	predicted gene 4846	protein-coding	0.000000	0.432836	-36(GCATATAAAGGA,+,0.00)
mm_170891.1	chr2	26640180	26640380	-	1	NA	NA	NA	-36	NR_024068	72091	Mm.27103	NR_024068		Snhg7	2610002F03Rik|AI427062	small nucleolar RNA host gene 7	ncRNA	0.105000	0.611940	
mm_70193.1	chr7	144406839	144407039	-	1	NA	NA	NA	36494	NR_037302	100499519		NR_037302	ENSMUSG00000093912	Mir3470b	mmu-mir-3470b	microRNA 3470b	ncRNA	0.020000	0.562189	
mm_7326.1	chr1	102188981	102189181	-	1	NA	NA	NA	1033313	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0.005000	0.338308	
mm_167337.1	chr8	71676196	71676396	+	1	NA	NA	NA	-87	NM_001190830	16453	Mm.249645	NM_010589	ENSMUSG00000031805	Jak3	fae|wil	Janus kinase 3	protein-coding	0.030000	0.572139	
mm_100410.1	chr11	119423296	119423496	+	1	NA	NA	NA	32924	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.015000	0.467662	
mm_150451.1	chr19	38118225	38118425	+	1	NA	NA	NA	6486	NM_011255	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.020000	0.572139	
mm_34681.1	chr4	151404906	151405106	+	1	NA	NA	NA	315436	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	0.020000	0.567164	
mm_83627.1	chr9	48910973	48911173	-	1	NA	NA	NA	26	NM_013561	15561	Mm.4831	NM_013561	ENSMUSG00000032269	Htr3a	5-HT3	5-hydroxytryptamine (serotonin) receptor 3A	protein-coding	0.025000	0.616915	
mm_13268.1	chr2	98666792	98666992	+	1	NA	NA	NA	1199235	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.035000	0.353234	
mm_102149.1	chr11	53633113	53633313	-	1	NA	NA	NA	1489	NM_008355	16163	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	0.040000	0.616915	
mm_28908.1	chr3	98723809	98724009	-	1	NA	NA	NA	634	NM_153193	15493	Mm.482364	NM_153193	ENSMUSG00000063730	Hsd3b2	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2	protein-coding	0.005000	0.417910	
mm_121275.1	chr14	103513341	103513541	+	1	NA	NA	NA	100	NM_022886	64929	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.040000	0.542289	
mm_133269.1	chr16	77368789	77368989	+	1	NA	NA	NA	39561	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.005000	0.358209	
mm_106436.1	chr11	119541043	119541243	-	1	NA	NA	NA	6677	NM_008730	18164	Mm.5142	NM_008730	ENSMUSG00000025582	Nptx1	D11Bwg1004e|Np1	neuronal pentraxin 1	protein-coding	0.015000	0.577114	
mm_75456.1	chr8	47714008	47714208	-	1	NA	NA	NA	-177	NM_172407	70925	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.165000	0.796020	
mm_8889.1	chr1	162886425	162886625	-	1	NA	NA	NA	12187	NM_018881	55990	Mm.10929	NM_018881	ENSMUSG00000040170	Fmo2	2310008D08Rik|2310042I22Rik|AW107733	flavin containing monooxygenase 2	protein-coding	0.010000	0.358209	
mm_58684.1	chr7	12603628	12603828	+	1	NA	NA	NA	2816	NM_001104644	637908	Mm.469871	NM_001104644	ENSMUSG00000096002	Vmn2r53	EG637908|Gm471	vomeronasal 2, receptor 53	protein-coding	0.005000	0.398010	18(AGCTTTAAAAAG,-,0.00),20(CTTTAAAAAGAG,+,0.00)
mm_49099.1	chr6	7845224	7845424	+	1	NA	NA	NA	100	NM_052993	94192	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.095000	0.666667	
mm_127336.1	chr15	100469004	100469204	+	1	NA	NA	NA	70	NM_134093	68614	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	0.115000	0.741294	
mm_114320.1	chr13	60601649	60601849	+	1	NA	NA	NA	-198	NM_001285917	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.065000	0.497512	
mm_137882.1	chr17	31586272	31586472	+	1	NA	NA	NA	21599	NM_016670	18771	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.010000	0.447761	
mm_73976.1	chr8	120535728	120535928	+	1	NA	NA	NA	-29	NM_001145897	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.115000	0.696517	
mm_86795.1	chr10	20229691	20229891	+	1	NA	NA	NA	21352	NM_001101561	621697	Mm.440587	NM_001101561		Rpl32l	EG621697|Gm6251	ribosomal protein L32-like	protein-coding	0.005000	0.497512	
mm_60420.1	chr7	44476267	44476467	+	1	NA	NA	NA	6020	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.447761	
mm_95581.1	chr11	52820115	52820315	+	1	NA	NA	NA	55509	NM_177059	320027	Mm.44518	NM_177059	ENSMUSG00000036264	Fstl4	B230374F23Rik|SPIG1|mKIAA1061	follistatin-like 4	protein-coding	0.010000	0.432836	
mm_107720.1	chr12	56289131	56289331	+	1	NA	NA	NA	35988	NR_045048	100503961	Mm.136732	NR_045048		Gm19990	-	predicted gene, 19990	ncRNA	0.005000	0.412935	-96(AACCTTAAAAGA,-,0.00),59(CTGTTTTAAAAG,-,0.00),60(TGTTTTAAAAGC,-,0.00),61(GTTTTAAAAGCA,+,0.00)
mm_108248.1	chr12	78226540	78226740	+	1	NA	NA	NA	-15	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.170000	0.815920	
mm_88231.1	chr10	70868543	70868743	+	1	NA	NA	NA	-212680	NR_045292	319646	Mm.483039	NR_045291	ENSMUSG00000037747	D630013N20Rik	-	RIKEN cDNA D630013N20 gene	ncRNA	0.000000	0.442786	
mm_71485.1	chr8	46739760	46739960	+	1	NA	NA	NA	115	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.030000	0.402985	
mm_93314.1	chr10	98913668	98913868	-	1	NA	NA	NA	-1384	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.030000	0.407960	
mm_455.1	chr1	36262322	36262522	+	1	NA	NA	NA	11003	NM_153408	214854	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.040000	0.512438	
mm_31161.1	chr4	43442421	43442621	+	1	NA	NA	NA	244	NM_011571	21754	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.050000	0.606965	
mm_90677.1	chr10	128908912	128909112	+	1	NA	NA	NA	93	NM_001042580	12512	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.030000	0.467662	
mm_51.1	chr1	6527871	6528071	+	1	NA	NA	NA	40740	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.015000	0.398010	
mm_80278.1	chr9	73012023	73012223	+	1	NA	NA	NA	26619	NM_028181	72278	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	0.015000	0.442786	
mm_42414.1	chr5	115235428	115235628	+	1	NA	NA	NA	-323	NM_026398	117109	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	0.130000	0.716418	
mm_44383.1	chr5	17828722	17828922	-	1	NA	NA	NA	7074	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.030000	0.492537	
mm_172979.1	chr9	96530365	96530565	-	1	NA	NA	NA	-51790	NM_001311135	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.010000	0.442786	
mm_150610.1	chr19	40846462	40846662	+	1	NA	NA	NA	15283	NM_172839	240665	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.005000	0.273632	
mm_153400.1	chr19	40496919	40497119	-	1	NA	NA	NA	16717	NM_178362	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.000000	0.497512	
mm_142352.1	chr17	43630185	43630385	-	1	NA	NA	NA	14	NM_001161366	210510	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	0.130000	0.751244	
mm_117622.1	chr13	91861246	91861446	-	1	NA	NA	NA	15539	NM_198415	76722	Mm.316438	NM_198415	ENSMUSG00000021622	Ckmt2	2300008A19Rik|ScCKmit	creatine kinase, mitochondrial 2	protein-coding	0.045000	0.601990	
mm_42956.1	chr5	123047011	123047211	+	1	NA	NA	NA	-95	NM_001347456	74890	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0.010000	0.467662	
mm_145409.1	chr18	57468626	57468826	+	1	NA	NA	NA	240	NM_001134697	629147	Mm.57415	NM_001134697	ENSMUSG00000069372	Ctxn3	ENSMUSG00000069372	cortexin 3	protein-coding	0.020000	0.502488	-83(GGGTTTTAATGG,-,0.00)
mm_65868.1	chr7	29505471	29505671	-	1	NA	NA	NA	-111	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.020000	0.527363	
mm_173131.1	chrX	18048957	18049157	+	1	NA	NA	NA	-96813	NM_028568	73547	Mm.159027	NM_028568	ENSMUSG00000025043	Dusp21	1700094E07Rik|DSP21	dual specificity phosphatase 21	protein-coding	0.015000	0.472637	-100(CCTTATAAGCAC,+,0.00)
mm_25307.1	chr3	106001500	106001700	+	1	NA	NA	NA	-103	NM_029604	100503311	Mm.386825	NM_029604	ENSMUSG00000010136	Pifo	1700027A23Rik	primary cilia formation	protein-coding	0.040000	0.542289	
mm_98081.1	chr11	86544974	86545174	+	1	NA	NA	NA	83	NM_001199046	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding	0.050000	0.407960	
mm_104584.1	chr11	96977265	96977465	-	1	NA	NA	NA	323	NM_030220	78912	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.125000	0.786070	
mm_145721.1	chr18	63708637	63708837	+	1	NA	NA	NA	42	NM_001014981	104082	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0.090000	0.656716	
mm_138565.1	chr17	35345565	35345765	+	1	NA	NA	NA	3332	NM_010392	15013	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|ENSMUSG00000079507|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	0.000000	0.452736	
mm_171101.1	chr3	133517443	133517643	-	1	NA	NA	NA	26847	NM_001346736	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.015000	0.572139	
mm_50811.1	chr6	54326803	54327003	+	1	NA	NA	NA	-109	NM_030024	78004	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	0.045000	0.631841	
mm_22692.1	chr3	17793891	17794091	+	1	NA	NA	NA	-1671	NR_029814	723950		NR_029814	ENSMUSG00000093073	Mir124a-2	Mirn124a-2|mir-124-2|mir-124a-2	microRNA 124a-2	ncRNA	0.060000	0.577114	11(CCTTATATCGCG,+,0.00)
mm_136006.1	chr16	75766974	75767174	-	1	NA	NA	NA	-256	NM_030201	110920	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0.045000	0.472637	
mm_19825.1	chr2	110950163	110950363	-	1	NA	NA	NA	-19	NM_001128103	228432	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding	0.035000	0.582090	
mm_150889.1	chr19	45363688	45363888	+	1	NA	NA	NA	54	NM_001037758	12234	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.085000	0.666667	
mm_37187.1	chr4	117375378	117375578	-	1	NA	NA	NA	-17	NM_001310729	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.000000	0.497512	-17(TTCTTTAAAAAC,-,0.00)
mm_62390.1	chr7	100943515	100943715	+	1	NA	NA	NA	-11454	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.005000	0.542289	
mm_106004.1	chr11	115708430	115708630	-	1	NA	NA	NA	67	NM_008163	14784	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.160000	0.781095	
mm_49056.1	chr6	5048233	5048433	+	1	NA	NA	NA	145013	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.005000	0.452736	
mm_148854.1	chr19	6393619	6393819	+	1	NA	NA	NA	-6864	NM_011242	19395	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.045000	0.611940	
mm_66732.1	chr7	46639698	46639898	-	1	NA	NA	NA	9	NM_013789	27414	Mm.76659	NM_013789	ENSMUSG00000030839	Sergef	DelGEF|Gef|Gnef|Gnefr	secretion regulating guanine nucleotide exchange factor	protein-coding	0.110000	0.716418	
mm_47594.1	chr5	124862185	124862385	-	1	NA	NA	NA	-64	NM_144819	215707	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.120000	0.696517	
mm_8285.1	chr1	140183208	140183408	-	1	NA	NA	NA	103	NM_009888	12628	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0.005000	0.437811	
mm_104510.1	chr11	95982538	95982738	-	1	NA	NA	NA	-19255	NR_037223	100526468		NR_037223	ENSMUSG00000093358	Mir3063	mmu-mir-3063	microRNA 3063	ncRNA	0.005000	0.532338	
mm_66526.1	chr7	45127360	45127560	-	1	NA	NA	NA	3	NR_000002	27209		NR_000002	ENSMUSG00000065219	Snord32a	Rnu32|Rnu32a|U32|U32A	small nucleolar RNA, C/D box 32A	snoRNA	0.035000	0.542289	
mm_93000.1	chr10	86885657	86885857	-	1	NA	NA	NA	106752	NM_175331	103466	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.020000	0.477612	
mm_139971.1	chr17	71769605	71769805	+	1	NA	NA	NA	14	NM_001271484	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	0.015000	0.522388	
mm_61501.1	chr7	76229761	76229961	+	1	NA	NA	NA	-26	NM_001199224	244071	Mm.322829	NM_172902	ENSMUSG00000025754	Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding	0.010000	0.592040	
mm_166842.1	chr7	19414870	19415070	+	1	NA	NA	NA	3876	NM_007710	12715	Mm.2375	NM_007710	ENSMUSG00000030399	Ckm	Ckmm|M-CK|MCK	creatine kinase, muscle	protein-coding	0.040000	0.587065	
mm_105255.1	chr11	102356028	102356228	-	1	NA	NA	NA	9153	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.025000	0.532338	
mm_98593.1	chr11	95808659	95808859	+	1	NA	NA	NA	-15741	NM_153104	237928	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.000000	0.572139	
mm_58925.1	chr7	17972023	17972223	+	1	NA	NA	NA	-44	NM_023289	66996	Mm.36666	NM_023289	ENSMUSG00000030368	Ceacam11	1600015D01Rik	carcinoembryonic antigen-related cell adhesion molecule 11	protein-coding	0.015000	0.477612	
mm_81460.1	chr9	109848520	109848720	+	1	NA	NA	NA	836	NM_009921	12796	Mm.3834	NM_009921	ENSMUSG00000038357	Camp	CAP18|Cnlp|Cramp|FALL39|MCLP	cathelicidin antimicrobial peptide	protein-coding	0.015000	0.572139	
mm_110985.1	chr12	77113524	77113724	-	1	NA	NA	NA	-124480	NM_001252614	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.010000	0.432836	-32(TGCTTGAAAAGC,-,0.00)
mm_169408.1	chr14	51860730	51860930	+	1	NA	NA	NA	6832	NM_017385	53873	Mm.221324	NM_017385		Ear7	mR7	eosinophil-associated, ribonuclease A family, member 7	protein-coding	0.005000	0.462687	
mm_90366.1	chr10	127167267	127167467	+	1	NA	NA	NA	1536	NM_001244618	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.015000	0.467662	
mm_115181.1	chr13	108449495	108449695	+	1	NA	NA	NA	133258	NM_178683	218581	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.005000	0.442786	
mm_121356.1	chr14	116925738	116925938	+	1	NA	NA	NA	541	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.075000	0.656716	-90(GCTTATAAAAGT,-,0.00)
mm_50540.1	chr6	49046069	49046269	+	1	NA	NA	NA	9651	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.005000	0.363184	-67(AACCATAAAAGG,-,0.00)
mm_145709.1	chr18	62922340	62922540	+	1	NA	NA	NA	113	NM_133237	494504	Mm.391102	NM_133237	ENSMUSG00000071847	Apcdd1	AB023957|AU041258|Drapc1|EIG180	adenomatosis polyposis coli down-regulated 1	protein-coding	0.155000	0.820896	
mm_139242.1	chr17	47733672	47733872	+	1	NA	NA	NA	-3265	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.025000	0.547264	
mm_173334.1	chrY	90791954	90792154	+	1	NA	NA	NA	6612	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.040000	0.577114	
mm_89453.1	chr10	93160701	93160901	+	1	NA	NA	NA	-75	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.110000	0.537313	
mm_21159.1	chr2	154569721	154569921	-	1	NA	NA	NA	71	NM_007891	13555	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|mKIAA4009	E2F transcription factor 1	protein-coding	0.155000	0.751244	
mm_113987.1	chr13	52582673	52582873	+	1	NA	NA	NA	-664	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.035000	0.557214	
mm_111704.1	chr12	103694565	103694765	-	1	NA	NA	NA	24	NM_001164742	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding	0.010000	0.457711	
mm_147939.1	chr18	66059477	66059677	-	1	NA	NA	NA	-56942	NM_001172062	70361	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	0.005000	0.507463	
mm_102783.1	chr11	68400695	68400895	-	1	NA	NA	NA	-13969	NM_008744	18208	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0.010000	0.497512	
mm_92139.1	chr10	66921189	66921389	-	1	NA	NA	NA	-905	NR_138561	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.035000	0.547264	
mm_135122.1	chr16	35841462	35841662	-	1	NA	NA	NA	29820	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.015000	0.363184	
mm_52891.1	chr6	122600227	122600427	+	1	NA	NA	NA	2117	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.010000	0.457711	
mm_96053.1	chr11	59565893	59566093	+	1	NA	NA	NA	5745	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.030000	0.577114	
mm_15452.1	chr2	157423801	157424001	+	1	NA	NA	NA	-392	NM_009271	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.025000	0.542289	
mm_38530.1	chr4	141546948	141547148	-	1	NA	NA	NA	886	NR_030695	320456	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.090000	0.626866	
mm_138763.1	chr17	37050956	37051156	+	1	NA	NA	NA	5090	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.085000	0.681592	
mm_151108.1	chr19	47864199	47864399	+	1	NA	NA	NA	-1246	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.020000	0.552239	
mm_16693.1	chr2	6884864	6885064	-	1	NA	NA	NA	32	NM_010160	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.025000	0.487562	
mm_88781.1	chr10	80602785	80602985	+	1	NA	NA	NA	3	NM_019575	56214	Mm.273170	NM_019575	ENSMUSG00000078441	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	0.115000	0.666667	
mm_36092.1	chr4	58499283	58499483	-	1	NA	NA	NA	20	NM_001290486	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.015000	0.502488	
mm_152920.1	chr19	28010925	28011125	-	1	NA	NA	NA	141	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.025000	0.532338	
mm_127920.1	chr15	9580528	9580728	-	1	NA	NA	NA	-50752	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.035000	0.517413	
mm_125759.1	chr15	73836051	73836251	+	1	NA	NA	NA	3520	NM_001033365	268816	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding	0.015000	0.606965	-58(CCCTTTAAACGC,+,0.00)
mm_158445.1	chrX	140542550	140542750	-	1	NA	NA	NA	18	NR_122039	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.085000	0.691542	
mm_85162.1	chr9	96364211	96364411	-	1	NA	NA	NA	-12	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.190000	0.786070	
mm_19979.1	chr2	118373896	118374096	-	1	NA	NA	NA	-577	NM_201367	381413	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	0.095000	0.706468	
mm_111278.1	chr12	85344381	85344581	-	1	NA	NA	NA	-5119	NM_145138	217718	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.010000	0.507463	
mm_92434.1	chr10	77166451	77166651	-	1	NA	NA	NA	-21	NM_009929	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.070000	0.711443	
mm_154517.1	chrM	12763	12963	-	1	NA	NA	NA	NA	NA									0.025000	0.422886	
mm_75130.1	chr8	34965331	34965531	-	1	NA	NA	NA	259	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.160000	0.805970	
mm_107353.1	chr12	32820720	32820920	+	1	NA	NA	NA	485	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.125000	0.741294	
mm_60204.1	chr7	43430003	43430203	+	1	NA	NA	NA	2	NM_177693	233187	Mm.267027	NM_177693	ENSMUSG00000004613	Lim2	19kDa|4833403J20|MP19|To3	lens intrinsic membrane protein 2	protein-coding	0.010000	0.587065	
mm_151232.1	chr19	53771733	53771933	+	1	NA	NA	NA	94527	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.010000	0.447761	
mm_117145.1	chr13	61040505	61040705	-	1	NA	NA	NA	-8	NM_029636	104002	Mm.46088	NM_029636	ENSMUSG00000021439	Ctsq	1600010J02Rik	cathepsin Q	protein-coding	0.015000	0.497512	
mm_297.1	chr1	23272555	23272755	+	1	NA	NA	NA	386	NR_029533	387225		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0.005000	0.253731	
mm_133337.1	chr16	80372156	80372356	+	1	NA	NA	NA	-828441	NM_001113208	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.010000	0.298507	
mm_52935.1	chr6	122933870	122934070	+	1	NA	NA	NA	12122	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.005000	0.398010	
mm_24240.1	chr3	89088686	89088886	+	1	NA	NA	NA	1245	NM_001083808	72296	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.010000	0.547264	
mm_4395.1	chr1	172343088	172343288	+	1	NA	NA	NA	1978	NM_001039484	16513	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	0.010000	0.542289	
mm_149038.1	chr19	8819955	8820155	+	1	NA	NA	NA	654	NM_001081196	68693	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0.105000	0.646766	
mm_105118.1	chr11	101119732	101119932	-	1	NA	NA	NA	-8	NM_026501	67998	Mm.33881	NM_026501	ENSMUSG00000017802	Fam134c	1300010M03Rik|4933404C01Rik|AI551748	family with sequence similarity 134, member C	protein-coding	0.115000	0.716418	
mm_146624.1	chr18	10172349	10172549	-	1	NA	NA	NA	9343	NM_009071	19877	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.000000	0.283582	
mm_98404.1	chr11	94328152	94328352	+	1	NA	NA	NA	251	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.105000	0.766169	
mm_32437.1	chr4	107209049	107209249	+	1	NA	NA	NA	-31	NM_001081272	546840	Mm.331755	NM_001081272	ENSMUSG00000070877	Ldlrad1	OTTMUSG00000008594	low density lipoprotein receptor class A domain containing 1	protein-coding	0.000000	0.537313	
mm_23575.1	chr3	63331567	63331767	+	1	NA	NA	NA	35572	NM_001289463	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.010000	0.288557	
mm_4700.1	chr1	180849065	180849265	+	1	NA	NA	NA	-1986	NM_145943	208768	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.000000	0.442786	
mm_127293.1	chr15	100154295	100154495	+	1	NA	NA	NA	-1	NM_172819	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.015000	0.482587	
mm_96329.1	chr11	64978968	64979168	+	1	NA	NA	NA	33	NM_023479	68626	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	0.095000	0.671642	
mm_109494.1	chr12	111449452	111449652	+	1	NA	NA	NA	6891	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.010000	0.527363	
mm_119056.1	chr14	30715555	30715755	+	1	NA	NA	NA	40	NM_001166532	54650	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.145000	0.781095	
mm_63677.1	chr7	130546872	130547072	+	1	NA	NA	NA	409	NM_001162855	67872	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0.110000	0.676617	
mm_126967.1	chr15	93002111	93002311	+	1	NA	NA	NA	272873	NM_001033275	223827	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.030000	0.547264	
mm_44943.1	chr5	36530520	36530720	-	1	NA	NA	NA	3	NM_001113364	100855	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.050000	0.641791	
mm_120621.1	chr14	70457150	70457350	+	1	NA	NA	NA	-267	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.010000	0.557214	
mm_67942.1	chr7	100354957	100355157	-	1	NA	NA	NA	16839	NM_028292	72590	Mm.177502	NM_028292	ENSMUSG00000030718	Ppme1	1110069N17Rik|2700017M01Rik|PME-1|Pme1	protein phosphatase methylesterase 1	protein-coding	0.000000	0.388060	
mm_115523.1	chr13	5861096	5861296	-	1	NA	NA	NA	-293	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.090000	0.626866	-34(GGGTATATAAGG,-,0.00)
mm_163418.1	chr12	79611141	79611341	+	1	NA	NA	NA	313492	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.025000	0.547264	
mm_168688.1	chr11	96081053	96081253	+	1	NA	NA	NA	-5459	NM_007506	11951	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	0.030000	0.452736	
mm_18779.1	chr2	73625609	73625809	-	1	NA	NA	NA	31	NM_029716	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	0.015000	0.487562	
mm_93931.1	chr10	127166251	127166451	-	1	NA	NA	NA	520	NM_001244618	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.050000	0.606965	
mm_61276.1	chr7	66743541	66743741	+	1	NA	NA	NA	137	NM_001164201	545975	Mm.380104	NM_001164201	ENSMUSG00000030510	Cers3	4930550L11Rik|Gm488|Lass3|T3L	ceramide synthase 3	protein-coding	0.030000	0.522388	
mm_121064.1	chr14	91891151	91891351	+	1	NA	NA	NA	1764360	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA	0.000000	0.273632	9(TTTTTAATAGTC,+,0.00)
mm_132449.1	chr16	36026747	36026947	+	1	NA	NA	NA	-14343	NM_027113	69544	Mm.37802	NM_027113	ENSMUSG00000034379	Wdr5b	2310009C03Rik|AI606931	WD repeat domain 5B	protein-coding	0.000000	0.492537	
mm_14229.1	chr2	127514650	127514850	+	1	NA	NA	NA	6642	NM_001291005	56461	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0.005000	0.442786	
mm_113450.1	chr13	35741362	35741562	+	1	NA	NA	NA	60	NM_001123386	12593	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.130000	0.731343	
mm_82019.1	chr9	121746438	121746638	+	1	NA	NA	NA	13405	NR_033503	320301	Mm.373883	NR_033503		E530011L22Rik	-	RIKEN cDNA E530011L22 gene	ncRNA	0.020000	0.552239	
mm_11293.1	chr2	30133757	30133957	+	1	NA	NA	NA	111	NM_146252	70296	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0.080000	0.666667	
mm_46072.1	chr5	92323003	92323203	-	1	NA	NA	NA	4976	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.000000	0.388060	
mm_83940.1	chr9	56796132	56796332	-	1	NA	NA	NA	55731	NM_198673	382075	Mm.335177	NM_198673	ENSMUSG00000045620	Odf3l1	BC049697|Gm1116	outer dense fiber of sperm tails 3-like 1	protein-coding	0.095000	0.641791	
mm_44210.1	chr5	4104511	4104711	-	1	NA	NA	NA	86	NM_020010	13121	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	0.105000	0.661692	
mm_151335.1	chr19	55894821	55895021	+	1	NA	NA	NA	-400	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.010000	0.318408	0(CTCTTTTAAAGT,-,0.00),1(TCTTTTAAAGTT,+,0.00)
mm_121100.1	chr14	99584384	99584584	+	1	NA	NA	NA	285793	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.020000	0.487562	
mm_107977.1	chr12	72945538	72945738	+	1	NA	NA	NA	5756	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	0.150000	0.786070	
mm_166167.1	chr5	21256785	21256985	+	1	NA	NA	NA	70618	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.010000	0.398010	
mm_95463.1	chr11	50382922	50383122	+	1	NA	NA	NA	5303	NM_001347487	59013	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.020000	0.402985	
mm_120243.1	chr14	62992247	62992447	+	1	NA	NA	NA	-5730	NM_001039125	654465	Mm.424929	NM_001039125	ENSMUSG00000075573	Defb47	Defb41|EG654465	defensin beta 47	protein-coding	0.005000	0.507463	
mm_6245.1	chr1	67038782	67038982	-	1	NA	NA	NA	-10	NM_021295	14768	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	0.095000	0.616915	
mm_28468.1	chr3	90695660	90695860	-	1	NA	NA	NA	-39	NM_009114	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.005000	0.472637	36(GCCTATAAATAC,-,0.00)
mm_47877.1	chr5	134688545	134688745	-	1	NA	NA	NA	-55	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.140000	0.781095	
mm_127877.1	chr15	8601909	8602109	-	1	NA	NA	NA	108798	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.020000	0.477612	
mm_19220.1	chr2	84650583	84650783	-	1	NA	NA	NA	57	NM_001085449	12388	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.010000	0.547264	
mm_131781.1	chr16	22895225	22895425	+	1	NA	NA	NA	-939	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.035000	0.497512	
mm_76478.1	chr8	85541777	85541977	-	1	NA	NA	NA	13394	NM_019794	56445	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0.010000	0.383085	6(CCTTTAATGGTT,+,0.00)
mm_170542.1	chr19	39902515	39902715	+	1	NA	NA	NA	-15846	NM_001104525	100043108	Mm.482331	NM_001104525	ENSMUSG00000092008	Cyp2c69	AI098658	cytochrome P450, family 2, subfamily c, polypeptide 69	protein-coding	0.005000	0.517413	-29(CCTTTTATAAGC,+,0.00),-29(CCTTTTATAAGC,-,0.00)
mm_153462.1	chr19	41263820	41264020	-	1	NA	NA	NA	84	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.170000	0.820896	
mm_131188.1	chr16	7217656	7217856	+	1	NA	NA	NA	147921	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.010000	0.502488	
mm_128792.1	chr15	66812024	66812224	-	1	NA	NA	NA	19705	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.005000	0.492537	
mm_99122.1	chr11	100164551	100164751	+	1	NA	NA	NA	-18725	NM_008471	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.010000	0.472637	
mm_138938.1	chr17	43953158	43953358	+	1	NA	NA	NA	67	NM_030598	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.025000	0.601990	
mm_57832.1	chr6	129464781	129464981	-	1	NA	NA	NA	7898	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.258706	
mm_154045.1	chr19	53944527	53944727	-	1	NA	NA	NA	0	NM_001195348	100503572	Mm.375091	NM_001195338	ENSMUSG00000084957	Bbip1	2310002J21Rik|2610002B11Rik|4930560M04Rik|Ncrna00081	BBSome interacting protein 1	protein-coding	0.070000	0.621891	
mm_115609.1	chr13	11991896	11992096	-	1	NA	NA	NA	114949	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.005000	0.462687	-50(GCTTATAGAGCC,+,0.00)
mm_163681.1	chr13	92576128	92576328	-	1	NA	NA	NA	4	NM_030237	79401	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	0.000000	0.522388	
mm_58816.1	chr7	16401176	16401376	+	1	NA	NA	NA	80	NM_198631	330474	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.130000	0.711443	
mm_81545.1	chr9	110247166	110247366	+	1	NA	NA	NA	3483	NM_001166273	29873	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding	0.040000	0.601990	
mm_126931.1	chr15	91676918	91677118	+	1	NA	NA	NA	3794	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.010000	0.373134	
mm_60195.1	chr7	43408400	43408600	+	1	NA	NA	NA	220	NM_172900	243958	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0.020000	0.542289	
mm_8276.1	chr1	139858607	139858807	-	1	NA	NA	NA	-8	NM_001025575	545366	Mm.439660	NM_001025575	ENSMUSG00000033898	Cfhr2	Cfhrb_4/2	complement factor H-related 2	protein-coding	0.005000	0.378109	
mm_21758.1	chr2	164839708	164839908	-	1	NA	NA	NA	6035	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.030000	0.572139	
mm_30505.1	chr3	158021315	158021515	-	1	NA	NA	NA	10339	NM_001093753	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.000000	0.318408	
mm_116490.1	chr13	44679182	44679382	-	1	NA	NA	NA	-51492	NM_021878	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.035000	0.522388	
mm_110821.1	chr12	72408650	72408850	-	1	NA	NA	NA	304	NM_001286448	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.095000	0.711443	
mm_56359.1	chr6	93810992	93811192	-	1	NA	NA	NA	101871	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.000000	0.313433	
mm_104246.1	chr11	88844344	88844544	-	1	NA	NA	NA	7059	NM_009648	11640	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	0.020000	0.542289	
mm_9398.1	chr1	172219963	172220163	-	1	NA	NA	NA	-168	NM_009813	12372	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.005000	0.582090	
mm_98044.1	chr11	85614722	85614922	+	1	NA	NA	NA	104922	NR_045875	71489	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.010000	0.412935	-91(TTCTTTTAAAGG,-,0.00),-90(TCTTTTAAAGGA,+,0.00),-89(CTTTTAAAGGAC,+,0.00)
mm_59476.1	chr7	27459234	27459434	+	1	NA	NA	NA	6916	NM_001290525	233016	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0.040000	0.601990	
mm_110075.1	chr12	21481623	21481823	-	1	NA	NA	NA	-64287	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.010000	0.487562	
mm_101666.1	chr11	36823461	36823661	-	1	NA	NA	NA	120680	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.020000	0.348259	
mm_101773.1	chr11	44470389	44470589	-	1	NA	NA	NA	59	NM_024475	79560	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	0.120000	0.671642	
mm_144575.1	chr18	31860518	31860718	+	1	NA	NA	NA	51285	NM_026006	67158	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	0.010000	0.353234	-28(GACCATTTAAGG,-,0.00),-26(CCATTTAAGGAG,+,0.00)
mm_115567.1	chr13	9765149	9765349	-	1	NA	NA	NA	72	NM_001347474	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.095000	0.626866	
mm_116745.1	chr13	51788309	51788509	-	1	NA	NA	NA	5338	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.010000	0.402985	-64(GGTTTTATAGGG,-,0.00)
mm_18080.1	chr2	43738923	43739123	-	1	NA	NA	NA	-9801	NM_001301832	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.030000	0.472637	48(AGCTATTAAAGC,-,0.00)
mm_48651.1	chr5	145860050	145860250	-	1	NA	NA	NA	19704	NM_007818	13112	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	0.005000	0.373134	
mm_142273.1	chr17	39847838	39848038	-	1	NA	NA	NA	4941	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.075000	0.567164	
mm_153208.1	chr19	34691453	34691653	-	1	NA	NA	NA	50664	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.025000	0.447761	
mm_137192.1	chr17	23822397	23822597	+	1	NA	NA	NA	6612	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.015000	0.567164	-54(GGCTATTAGAGA,-,0.00)
mm_9544.1	chr1	173912855	173913055	-	1	NA	NA	NA	91	NM_001301745	381308	Mm.490248	NM_001033450	ENSMUSG00000026536	Ifi211	A730048F03|Ifi205b|Mnda|ifi-205-B	interferon activated gene 211	protein-coding	0.010000	0.487562	
mm_16764.1	chr2	9878075	9878275	-	1	NA	NA	NA	425	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.055000	0.597015	
mm_91712.1	chr10	44148866	44149066	-	1	NA	NA	NA	-21481	NR_001582	70365	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	0.095000	0.726368	
mm_66483.1	chr7	45017173	45017373	-	1	NA	NA	NA	-734	NM_009101	20130	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.050000	0.547264	
mm_135290.1	chr16	38522573	38522773	-	1	NA	NA	NA	-10	NM_024273	76916	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	0.090000	0.656716	
mm_121427.1	chr14	120326468	120326668	+	1	NA	NA	NA	50899	NM_175341	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding	0.005000	0.457711	
mm_117614.1	chr13	91591319	91591519	-	1	NA	NA	NA	130322	NM_024186	66970	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.010000	0.457711	
mm_134077.1	chr16	8682647	8682847	-	1	NA	NA	NA	1977	NM_001324517	436336	Mm.357666	NM_001324517		Gm5767	EG436336	predicted gene 5767	protein-coding	0.010000	0.527363	
mm_103759.1	chr11	80858217	80858417	-	1	NA	NA	NA	-17	NR_110449	75043	Mm.410815	NR_110449	ENSMUSG00000086703	4930507D10Rik	-	RIKEN cDNA 4930507D10 gene	ncRNA	0.025000	0.457711	53(CATTTTAGAGGC,+,0.00)
mm_115945.1	chr13	23710707	23710907	-	1	NA	NA	NA	47	NM_001347493	15216	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0.015000	0.527363	
mm_141846.1	chr17	34801282	34801482	-	1	NA	NA	NA	3044	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.000000	0.517413	
mm_128330.1	chr15	38299592	38299792	-	1	NA	NA	NA	1019	NM_013692	21847	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.115000	0.741294	
mm_34656.1	chr4	150865291	150865491	+	1	NA	NA	NA	10300	NM_133753	74155	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.000000	0.412935	
mm_19598.1	chr2	102400363	102400563	-	1	NA	NA	NA	437	NM_020267	80985	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	0.120000	0.711443	
mm_155773.1	chrX	96255617	96255817	+	1	NA	NA	NA	12900	NR_029801	723814		NR_029801	ENSMUSG00000076066	Mir223	Mirn223|miR-223|mmu-mir-223	microRNA 223	ncRNA	0.005000	0.452736	
mm_152361.1	chr19	10091710	10091910	-	1	NA	NA	NA	9693	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	0.020000	0.557214	
mm_110795.1	chr12	72116162	72116362	-	1	NA	NA	NA	30423	NM_024205	104771	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	0.020000	0.457711	
mm_106987.1	chr12	10390696	10390896	+	1	NA	NA	NA	16	NM_023697	105014	Mm.119343	NM_023697	ENSMUSG00000020621	Rdh14	3110030G19Rik|AW215439|PAN2	retinol dehydrogenase 14 (all-trans and 9-cis)	protein-coding	0.080000	0.676617	
mm_140305.1	chr17	85629021	85629221	+	1	NA	NA	NA	8287	NM_011381	20473	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0.015000	0.512438	
mm_28814.1	chr3	96259694	96259894	-	1	NA	NA	NA	3523	NM_033596	97122	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0.010000	0.482587	
mm_5471.1	chr1	36558140	36558340	-	1	NA	NA	NA	141	NM_001126047	20353	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.140000	0.761194	
mm_1931.1	chr1	86110880	86111080	+	1	NA	NA	NA	990	NM_008311	15559	Mm.439747	NM_008311	ENSMUSG00000026228	Htr2b	5-HT2B|AJ012488|AV377389	5-hydroxytryptamine (serotonin) receptor 2B	protein-coding	0.020000	0.472637	
mm_52690.1	chr6	118162997	118163197	+	1	NA	NA	NA	-23957	NM_030165	78752	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0.015000	0.507463	
mm_13312.1	chr2	102658748	102658948	+	1	NA	NA	NA	165	NM_001077514	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.125000	0.716418	
mm_96016.1	chr11	59542892	59543092	+	1	NA	NA	NA	306	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.010000	0.417910	23(CTTTTAATACCA,+,0.00)
mm_29662.1	chr3	122569630	122569830	-	1	NA	NA	NA	-28049	NR_106117	102465764		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.020000	0.348259	
mm_25135.1	chr3	102469805	102470005	+	1	NA	NA	NA	-14	NM_001112698	18049	Mm.1259	NM_013609	ENSMUSG00000027859	Ngf	Ngfb	nerve growth factor	protein-coding	0.055000	0.631841	
mm_163196.1	chr11	95830433	95830633	+	1	NA	NA	NA	6033	NM_153104	237928	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.095000	0.676617	
mm_113314.1	chr13	30764029	30764229	+	1	NA	NA	NA	14896	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.010000	0.492537	
mm_34087.1	chr4	138832789	138832989	+	1	NA	NA	NA	1013	NM_001082531	18780	Mm.4675	NM_011108	ENSMUSG00000058908	Pla2g2a	EF|Mom1|Pla2|sPLA2|sPla2-IIA	phospholipase A2, group IIA (platelets, synovial fluid)	protein-coding	0.005000	0.497512	
mm_27580.1	chr3	59098279	59098479	-	1	NA	NA	NA	3442	NM_173398	229323	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	0.010000	0.298507	
mm_71364.1	chr8	45695376	45695576	+	1	NA	NA	NA	33483	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.010000	0.402985	
mm_25266.1	chr3	104793931	104794131	+	1	NA	NA	NA	4997	NM_007484	11853	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0.045000	0.606965	
mm_158921.1	chr1	59120342	59120542	-	1	NA	NA	NA	-346	NM_001033449	381259	Mm.261275	NM_001033449	ENSMUSG00000038079	Tmem237	AI853305|Als2cr4|Gm972	transmembrane protein 237	protein-coding	0.090000	0.696517	
mm_4512.1	chr1	174211556	174211756	+	1	NA	NA	NA	38880	NM_011465	20739	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding	0.005000	0.472637	
mm_98430.1	chr11	94681713	94681913	+	1	NA	NA	NA	-4320	NM_145828	217119	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	0.005000	0.368159	38(CACCATATATGG,-,0.00),40(CCATATATGGAG,+,0.00)
mm_161228.1	chr13	76825377	76825577	+	1	NA	NA	NA	309991	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0.020000	0.567164	
mm_118818.1	chr14	25517414	25517614	+	1	NA	NA	NA	-16925	NR_037236	100526533		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.005000	0.582090	
mm_165405.1	chr2	140671284	140671484	-	1	NA	NA	NA	92	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.060000	0.582090	
mm_152193.1	chr19	7483004	7483204	-	1	NA	NA	NA	187	NM_001271486	20168	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0.100000	0.656716	
mm_55724.1	chr6	73608571	73608771	-	1	NA	NA	NA	-137650	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.005000	0.477612	-36(GACCATAAAAAG,-,0.00),-34(CCATAAAAAGGG,+,0.00)
mm_144698.1	chr18	34862506	34862706	+	1	NA	NA	NA	1399	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.050000	0.582090	
mm_138870.1	chr17	43077215	43077415	+	1	NA	NA	NA	60760	NM_178589	94185	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0.050000	0.572139	
mm_109529.1	chr12	111538376	111538576	+	1	NA	NA	NA	375	NM_173363	217869	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.145000	0.726368	
mm_6371.1	chr1	72284157	72284357	-	1	NA	NA	NA	57	NM_023523	111175	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding	0.045000	0.567164	
mm_26771.1	chr3	8937883	8938083	-	1	NA	NA	NA	-14126	NM_025434	66230	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.005000	0.412935	
mm_147814.1	chr18	61726219	61726419	-	1	NA	NA	NA	12	NM_021296	17714	Mm.269657	NM_021296	ENSMUSG00000024580	Grpel2	mt-GrpE#2|mt-Grpel2	GrpE-like 2, mitochondrial	protein-coding	0.095000	0.661692	
mm_46516.1	chr5	105293597	105293797	-	1	NA	NA	NA	2	NM_194336	100702	Mm.491210	NM_194336	ENSMUSG00000079362	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	0.000000	0.507463	
mm_81942.1	chr9	120490061	120490261	+	1	NA	NA	NA	-2445	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.010000	0.522388	-49(CCCTTTATGAGG,+,0.00),-49(CCCTTTATGAGG,-,0.00)
mm_21016.1	chr2	152397617	152397817	-	1	NA	NA	NA	329	NM_011438	20667	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.185000	0.880597	
mm_89834.1	chr10	106632592	106632792	+	1	NA	NA	NA	-30212	NR_131026	75833	Mm.159596	NR_131026		4930532I03Rik	-	RIKEN cDNA 4930532I03 gene	ncRNA	0.035000	0.467662	-49(GCTTCTAAAAGC,-,0.00)
mm_169039.1	chr13	13892157	13892357	-	1	NA	NA	NA	-62417	NM_178640	97884	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0.040000	0.442786	63(GCGTTTTTAAGG,-,0.00),65(GTTTTTAAGGCG,+,0.00)
mm_86613.1	chr10	13965144	13965344	+	1	NA	NA	NA	-1135	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.075000	0.597015	
mm_133994.1	chr16	4718949	4719149	-	1	NA	NA	NA	307	NM_001290763	67824	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	0.050000	0.572139	
mm_99354.1	chr11	101586177	101586377	+	1	NA	NA	NA	4035	NM_144830	217203	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.035000	0.512438	
mm_64919.1	chr7	16247377	16247577	-	1	NA	NA	NA	-3323	NM_176912	319430	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	0.010000	0.447761	
mm_95000.1	chr11	31872692	31872892	+	1	NA	NA	NA	1852	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.025000	0.497512	
mm_4095.1	chr1	167331263	167331463	+	1	NA	NA	NA	-18628	NM_019993	56752	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.030000	0.537313	
mm_110657.1	chr12	59061382	59061582	-	1	NA	NA	NA	-10	NM_001306217	78232	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	0.050000	0.671642	
mm_44927.1	chr5	36036935	36037135	-	1	NA	NA	NA	143716	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	0.000000	0.437811	
mm_50313.1	chr6	47877459	47877659	+	1	NA	NA	NA	4	NM_146175	101095	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	0.090000	0.711443	
mm_66488.1	chr7	45050825	45051025	-	1	NA	NA	NA	1956	NM_175022	233210	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	0.010000	0.532338	
mm_138440.1	chr17	35122690	35122890	+	1	NA	NA	NA	-162	NM_032460	81845	Mm.7405	NM_032460	ENSMUSG00000092417	Gpank1	Bat-4|Bat4|D17H6S54E|G5	G patch domain and ankyrin repeats 1	protein-coding	0.010000	0.422886	
mm_108723.1	chr12	87200241	87200441	+	1	NA	NA	NA	-112	NM_001033475	382620	Mm.374912	NM_001033475	ENSMUSG00000034111	Tmed8	6430595O10Rik|AI447224|Gm1184|Mem1	transmembrane p24 trafficking protein 8	protein-coding	0.120000	0.686567	
mm_51192.1	chr6	71204816	71205016	+	1	NA	NA	NA	5028	NM_017399	14080	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0.010000	0.303483	
mm_121467.1	chr14	120910514	120910714	+	1	NA	NA	NA	-580	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	0.045000	0.666667	
mm_44959.1	chr5	36696652	36696852	-	1	NA	NA	NA	-731	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.010000	0.512438	
mm_51579.1	chr6	83762579	83762779	+	1	NA	NA	NA	33	NM_029245	75305	Mm.391478	NM_029245	ENSMUSG00000014747	Ankrd53	4930564N15Rik	ankyrin repeat domain 53	protein-coding	0.035000	0.472637	
mm_119835.1	chr14	54414016	54414216	+	1	NA	NA	NA	3563	NM_001253679	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.035000	0.641791	
mm_53158.1	chr6	125320536	125320736	+	1	NA	NA	NA	-704	NM_011324	20276	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0.000000	0.601990	
mm_40949.1	chr5	76840517	76840717	+	1	NA	NA	NA	18	NM_001163793	320827	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.025000	0.527363	
mm_100951.1	chr11	6605566	6605766	-	1	NA	NA	NA	388	NM_001081652	192950	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	0.100000	0.686567	
mm_170655.1	chr2	104826116	104826316	-	1	NA	NA	NA	-9520	NM_001123327	99003	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	0.025000	0.487562	
mm_28517.1	chr3	92584380	92584580	-	1	NA	NA	NA	4544	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.005000	0.517413	
mm_171197.1	chr3	47051694	47051894	-	1	NA	NA	NA	-151012	NR_105800	102465199		NR_105800	ENSMUSG00000098417	Mir6379	Gm27730|mmu-mir-6379	microRNA 6379	ncRNA	0.060000	0.482587	
mm_146395.1	chr18	82910517	82910717	+	1	NA	NA	NA	-262	NM_183033	329003	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.065000	0.587065	-69(GGCTATTAGGGG,-,0.00)
mm_136261.1	chr16	91011324	91011524	-	1	NA	NA	NA	-116	NM_001164483	104015	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.085000	0.706468	
mm_7222.1	chr1	93342490	93342690	-	1	NA	NA	NA	198	NM_080850	269224	Mm.379454	NM_080850	ENSMUSG00000026274	Pask	mKIAA0135	PAS domain containing serine/threonine kinase	protein-coding	0.080000	0.636816	
mm_24333.1	chr3	89586272	89586472	+	1	NA	NA	NA	66208	NM_080466	140493	Mm.120250	NM_080466	ENSMUSG00000000794	Kcnn3	KCa2.3|SK3|SKCA3	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3	protein-coding	0.015000	0.472637	
mm_157701.1	chrX	60891941	60892141	-	1	NA	NA	NA	1389	NM_009237	20675	Mm.35784	NM_009237	ENSMUSG00000045179	Sox3	Sox-3	SRY (sex determining region Y)-box 3	protein-coding	0.085000	0.656716	
mm_76034.1	chr8	77376121	77376321	-	1	NA	NA	NA	-140835	NR_028125	70345	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.000000	0.437811	
mm_172215.1	chr6	62042086	62042286	-	1	NA	NA	NA	-861376	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA	0.045000	0.477612	
mm_153005.1	chr19	30175301	30175501	-	1	NA	NA	NA	40	NM_138595	104174	Mm.274852	NM_138595	ENSMUSG00000024827	Gldc	D030049L12Rik|D19Wsu57e	glycine decarboxylase	protein-coding	0.065000	0.626866	
mm_36449.1	chr4	82498328	82498528	-	1	NA	NA	NA	7351	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.040000	0.527363	
mm_25095.1	chr3	101010931	101011131	+	1	NA	NA	NA	18464	NM_001167906	630146	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0.000000	0.497512	
mm_161948.1	chr19	4625489	4625689	-	1	NA	NA	NA	28	NM_023131	19671	Mm.391143	NM_023131	ENSMUSG00000024889	Rce1	D19Ertd283e|D19Ertd98e	Ras converting CAAX endopeptidase 1	protein-coding	0.155000	0.731343	
mm_86409.1	chr10	3366043	3366243	+	1	NA	NA	NA	-7	NM_133485	76142	Mm.308126	NM_133485	ENSMUSG00000040653	Ppp1r14c	6330514J04Rik|KEPI	protein phosphatase 1, regulatory (inhibitor) subunit 14c	protein-coding	0.045000	0.592040	
mm_79439.1	chr9	56089898	56090098	+	1	NA	NA	NA	22	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.015000	0.661692	
mm_74109.1	chr8	122937768	122937968	+	1	NA	NA	NA	89494	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.000000	0.502488	
mm_81511.1	chr9	110034847	110035047	+	1	NA	NA	NA	-17074	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.010000	0.487562	
mm_71043.1	chr8	33668354	33668554	+	1	NA	NA	NA	15216	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.015000	0.472637	
mm_14766.1	chr2	145675250	145675450	+	1	NA	NA	NA	-25845	NR_033220	408057	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.060000	0.611940	
mm_98935.1	chr11	98358292	98358492	+	1	NA	NA	NA	24	NM_021547	59045	Mm.265546	NM_021547	ENSMUSG00000018167	Stard3	Mln64|es64	START domain containing 3	protein-coding	0.100000	0.731343	
mm_119297.1	chr14	34692437	34692637	+	1	NA	NA	NA	18609	NM_001301330	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.020000	0.353234	
mm_123091.1	chr14	55783523	55783723	-	1	NA	NA	NA	396	NM_080435	104110	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	0.060000	0.641791	
mm_37070.1	chr4	116144518	116144718	-	1	NA	NA	NA	-2	NM_026547	68075	Mm.132803	NM_026547	ENSMUSG00000028701	Lurap1	1520402A15Rik|Lrp35a	leucine rich adaptor protein 1	protein-coding	0.100000	0.676617	
mm_82845.1	chr9	31170422	31170622	-	1	NA	NA	NA	-38723	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.025000	0.477612	-89(CCTTATATAGCT,+,0.00)
mm_149.1	chr1	11185156	11185356	+	1	NA	NA	NA	-78707	NM_001033636	109294	Mm.123247	NM_029525	ENSMUSG00000048960	Prex2	6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	protein-coding	0.000000	0.323383	83(TGCTTTAAAAGA,-,0.00),84(GCTTTAAAAGAG,+,0.00)
mm_130111.1	chr15	89476223	89476423	-	1	NA	NA	NA	71	NR_077233	100532730	Mm.461541	NR_077233		C230037L18Rik	-	RIKEN cDNA C230037L18 gene	ncRNA	0.080000	0.686567	
mm_130020.1	chr15	88734129	88734329	-	1	NA	NA	NA	-10	NM_001033274	223770	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	0.200000	0.810945	
mm_110777.1	chr12	70513913	70514113	-	1	NA	NA	NA	60859	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0.005000	0.432836	
mm_19162.1	chr2	83917270	83917470	-	1	NA	NA	NA	23856	NM_027964	71861	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.005000	0.388060	
mm_7603.1	chr1	126173690	126173890	-	1	NA	NA	NA	-260862	NM_001311089	72585	Mm.490405	NM_145100	ENSMUSG00000026344	Lypd1	2700050C12Rik|AI853408|C530008O16Rik|Lynx2|Lypdc1	Ly6/Plaur domain containing 1	protein-coding	0.030000	0.492537	
mm_141261.1	chr17	27623285	27623485	-	1	NA	NA	NA	67	NM_019837	56409	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0.160000	0.761194	
mm_36402.1	chr4	77856679	77856879	-	1	NA	NA	NA	355116	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.005000	0.338308	
mm_15470.1	chr2	157471075	157471275	+	1	NA	NA	NA	46882	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.025000	0.606965	
mm_8989.1	chr1	165707900	165708100	-	1	NA	NA	NA	94	NM_178593	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.105000	0.716418	
mm_5559.1	chr1	38794986	38795186	-	1	NA	NA	NA	26129	NM_001029878	381338	Mm.487137	NM_028403	ENSMUSG00000048814	Lonrf2	2900060P06Rik|AI851349	LON peptidase N-terminal domain and ring finger 2	protein-coding	0.005000	0.432836	
mm_4370.1	chr1	172102040	172102240	+	1	NA	NA	NA	-19391	NM_021607	59287	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	0.010000	0.487562	
mm_8634.1	chr1	156420785	156420985	-	1	NA	NA	NA	30	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.085000	0.641791	
mm_146495.1	chr18	3280906	3281106	-	1	NA	NA	NA	126	NM_001311066	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.040000	0.447761	
mm_100845.1	chr11	5762281	5762481	-	1	NA	NA	NA	-5	NM_001077661	72046	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	0.135000	0.706468	
mm_18641.1	chr2	69453127	69453327	-	1	NA	NA	NA	72765	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.015000	0.368159	
mm_169139.1	chr13	61804160	61804360	+	1	NA	NA	NA	32680	NR_028430	432812	Mm.317358	NR_028430		BC052688	-	cDNA sequence BC052688	pseudo	0.030000	0.532338	
mm_99753.1	chr11	106723161	106723361	+	1	NA	NA	NA	-7980	NM_001305157	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.005000	0.502488	
mm_166368.1	chr5	125267144	125267344	+	1	NA	NA	NA	73850	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.020000	0.621891	
mm_24499.1	chr3	92407890	92408090	+	1	NA	NA	NA	-1	NM_011475	20763	Mm.196439	NM_011475	ENSMUSG00000042157	Sprr2i	-	small proline-rich protein 2I	protein-coding	0.005000	0.452736	-31(TCTTATAAAGAG,+,0.00)
mm_63600.1	chr7	128144750	128144950	+	1	NA	NA	NA	15282	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.020000	0.562189	
mm_68445.1	chr7	109986363	109986563	-	1	NA	NA	NA	-233	NM_153525	233724	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	0.085000	0.557214	
mm_151081.1	chr19	47619730	47619930	+	1	NA	NA	NA	39811	NM_001164639	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0.010000	0.427861	
mm_155147.1	chrX	52791067	52791267	+	1	NA	NA	NA	-33	NM_001034059	434778	Mm.23411	NM_001034059	ENSMUSG00000073207	Ccdc160	6330534C20Rik	coiled-coil domain containing 160	protein-coding	0.060000	0.651741	-33(CCCTTTAAATCC,+,0.00)
mm_143765.1	chr17	81628926	81629126	-	1	NA	NA	NA	109361	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.000000	0.318408	
mm_144445.1	chr18	22344819	22345019	+	1	NA	NA	NA	-170	NM_001167777	211961	Mm.392310	NM_001167777	ENSMUSG00000045215	Asxl3	C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945	additional sex combs like 3 (Drosophila)	protein-coding	0.065000	0.567164	
mm_60052.1	chr7	31149852	31150052	+	1	NA	NA	NA	1098	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.020000	0.527363	
mm_123818.1	chr14	70540682	70540882	-	1	NA	NA	NA	-4469	NM_180588	72549	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	0.015000	0.487562	
mm_96659.1	chr11	69396044	69396244	+	1	NA	NA	NA	353	NM_030083	78304	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	0.055000	0.616915	
mm_19317.1	chr2	90556263	90556463	-	1	NA	NA	NA	24284	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.015000	0.462687	28(GTGCATATAAAG,-,0.00),30(GCATATAAAGAC,+,0.00),48(ACCCATAAATGG,-,0.00)
mm_172450.1	chr7	32641139	32641339	-	1	NA	NA	NA	188414	NM_001281523	624439	Mm.326965	NM_001281523	ENSMUSG00000097972	Scgb2b15	Abpb15|EG624439|Gm6504	secretoglobin, family 2B, member 15	protein-coding	0.060000	0.577114	-95(CGGTTTTAATGG,-,0.00)
mm_7546.1	chr1	124504150	124504350	-	1	NA	NA	NA	-458691	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.437811	
mm_37283.1	chr4	119072833	119073033	-	1	NA	NA	NA	-3822	NR_131914	433751	Mm.224312	NR_131914	ENSMUSG00000066060	Gm12866	OTTMUSG00000008833	predicted gene 12866	ncRNA	0.040000	0.597015	
mm_172457.1	chr7	40190815	40191015	+	1	NA	NA	NA	-483822	NR_045504	71029	Mm.399496	NR_045504	ENSMUSG00000102004	4933402C06Rik	-	RIKEN cDNA 4933402C06 gene	ncRNA	0.025000	0.457711	
mm_115575.1	chr13	11572889	11573089	-	1	NA	NA	NA	50937	NR_027813	664793	Mm.410565	NR_027813		Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo	0.005000	0.447761	
mm_84558.1	chr9	67733644	67733844	-	1	NA	NA	NA	-4167	NR_106101	102465716		NR_106101	ENSMUSG00000098446	Mir7242	Gm27809|mmu-mir-7242	microRNA 7242	ncRNA	0.035000	0.537313	
mm_41918.1	chr5	105606484	105606684	+	1	NA	NA	NA	87113	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.035000	0.542289	
mm_140633.1	chr17	12507270	12507470	-	1	NA	NA	NA	334	NM_011395	20519	Mm.99252	NM_011395	ENSMUSG00000023828	Slc22a3	EMT|Oct3|Orct3|Slca22a3	solute carrier family 22 (organic cation transporter), member 3	protein-coding	0.125000	0.756219	
mm_75339.1	chr8	43306596	43306796	-	1	NA	NA	NA	313	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.010000	0.432836	
mm_150698.1	chr19	42255143	42255343	+	1	NA	NA	NA	-496	NM_027694	71146	Mm.329851	NM_027694	ENSMUSG00000042532	Golga7b	4933417O08Rik|AI839934	golgi autoantigen, golgin subfamily a, 7B	protein-coding	0.010000	0.482587	53(TTCCATAAAAGA,-,0.00)
mm_7680.1	chr1	128589239	128589439	-	1	NA	NA	NA	2960	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.035000	0.552239	
mm_133460.1	chr16	89140787	89140987	+	1	NA	NA	NA	-64974	NM_001163615	622935	Mm.459837	NM_001163615	ENSMUSG00000091039	Krtap20-2	1190004K03Rik|EG622935|Gm6371	keratin associated protein 20-2	protein-coding	0.005000	0.467662	-34(GTATATAAAAGG,-,0.00)
mm_36763.1	chr4	101356617	101356817	-	1	NA	NA	NA	-469	NR_040708	77866	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0.035000	0.462687	
mm_4175.1	chr1	171121943	171122143	+	1	NA	NA	NA	382	NM_001081275	75472	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.010000	0.542289	
mm_8439.1	chr1	152766262	152766462	-	1	NA	NA	NA	-57	NM_001346117	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.100000	0.686567	
mm_32793.1	chr4	116995224	116995424	+	1	NA	NA	NA	-24	NM_175244	76608	Mm.251420	NM_175244	ENSMUSG00000046861	Hectd3	1700064K09Rik|AI467540|AW743312	HECT domain containing 3	protein-coding	0.055000	0.592040	
mm_112522.1	chr13	9175333	9175533	+	1	NA	NA	NA	81552	NM_172585	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.010000	0.412935	-3(CACTCTAAAAAG,-,0.00)
mm_77604.1	chr8	123893077	123893277	-	1	NA	NA	NA	1598	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.045000	0.587065	
mm_116770.1	chr13	52929391	52929591	-	1	NA	NA	NA	186	NM_016709	11992	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	0.125000	0.741294	
mm_145566.1	chr18	60812415	60812615	+	1	NA	NA	NA	439	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.005000	0.577114	
mm_57276.1	chr6	123290492	123290692	-	1	NA	NA	NA	-721	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.373134	
mm_37299.1	chr4	119219117	119219317	-	1	NA	NA	NA	-1000	NM_029198	75180	Mm.179335	NM_029198	ENSMUSG00000028642	Tmem269	4930538K18Rik	transmembrane protein 269	protein-coding	0.005000	0.487562	
mm_26419.1	chr3	142611386	142611586	+	1	NA	NA	NA	-9177	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.005000	0.452736	
mm_15317.1	chr2	155629276	155629476	+	1	NA	NA	NA	6496	NR_030757	735275		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	0.095000	0.706468	
mm_106683.1	chr12	3235668	3235868	+	1	NA	NA	NA	-23	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.125000	0.661692	
mm_77043.1	chr8	109575612	109575812	-	1	NA	NA	NA	3460	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.045000	0.542289	
mm_47819.1	chr5	134231408	134231608	-	1	NA	NA	NA	-1883	NR_104383	17969	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.015000	0.567164	
mm_85402.1	chr9	103365290	103365490	-	1	NA	NA	NA	390	NM_175833	321022	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.120000	0.711443	
mm_159409.1	chr3	102203784	102203984	-	1	NA	NA	NA	809	NM_177545	229658	Mm.118004	NM_177545	ENSMUSG00000027860	Vangl1	Kitenin|Lpp2|Stb2|Stbm	vang-like 1 (van gogh, Drosophila)	protein-coding	0.065000	0.577114	
mm_82345.1	chr9	13821591	13821791	-	1	NA	NA	NA	5362	NR_037622	74360	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding	0.015000	0.323383	
mm_2378.1	chr1	93373752	93373952	+	1	NA	NA	NA	-44	NM_207031	404545	Mm.297411	NM_207031	ENSMUSG00000034107	Ano7	Ngep|Ngep-L|Pcanap5|Tmem16g	anoctamin 7	protein-coding	0.005000	0.592040	
mm_100416.1	chr11	119430168	119430368	+	1	NA	NA	NA	39796	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.010000	0.452736	
mm_97961.1	chr11	83740624	83740824	+	1	NA	NA	NA	-6216	NM_183249	66107	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.005000	0.442786	
mm_57758.1	chr6	129232801	129233001	-	1	NA	NA	NA	5144	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.015000	0.452736	
mm_4733.1	chr1	181576501	181576701	+	1	NA	NA	NA	-65150	NM_207280	403180	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	0.040000	0.606965	
mm_47336.1	chr5	122501683	122501883	-	1	NA	NA	NA	442	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.155000	0.786070	
mm_158387.1	chrX	136170897	136171097	-	1	NA	NA	NA	1254	NM_001168578	66684	Mm.182094	NM_025703	ENSMUSG00000051579	Tceal8	3930402F23Rik	transcription elongation factor A (SII)-like 8	protein-coding	0.020000	0.442786	
mm_96269.1	chr11	62760939	62761139	+	1	NA	NA	NA	28378	NM_138949	192651	Mm.168530	NM_138949	ENSMUSG00000047342	Zfp286	BC027023	zinc finger protein 286	protein-coding	0.015000	0.452736	
mm_94957.1	chr11	30268216	30268416	+	1	NA	NA	NA	-48544	NM_175836	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.150000	0.786070	
mm_93452.1	chr10	110084443	110084643	-	1	NA	NA	NA	-84324	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.000000	0.343284	89(AGGTATAAAAGA,-,0.00)
mm_161614.1	chr16	49057323	49057523	+	1	NA	NA	NA	-63	NM_001166210	667772	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0.005000	0.393035	
mm_125012.1	chr15	25622651	25622851	+	1	NA	NA	NA	201	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.075000	0.666667	
mm_144955.1	chr18	37812979	37813179	+	1	NA	NA	NA	-2000	NM_033582	93707	Mm.247203	NM_033582	ENSMUSG00000023036	Pcdhgc4	-	protocadherin gamma subfamily C, 4	protein-coding	0.005000	0.452736	
mm_31843.1	chr4	74251859	74252059	+	1	NA	NA	NA	80	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.110000	0.691542	
mm_4366.1	chr1	172082687	172082887	+	1	NA	NA	NA	-38	NM_021607	59287	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	0.090000	0.671642	
mm_63380.1	chr7	127213010	127213210	+	1	NA	NA	NA	1502	NM_016754	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.010000	0.552239	
mm_23347.1	chr3	54755456	54755656	+	1	NA	NA	NA	-26	NM_019483	55994	Mm.244353	NM_019483	ENSMUSG00000027796	Smad9	MADH6|Madh8|Madh9|Smad8	SMAD family member 9	protein-coding	0.150000	0.800995	
mm_44191.1	chr5	3480774	3480974	-	1	NA	NA	NA	-62959	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.010000	0.527363	
mm_82904.1	chr9	32915536	32915736	-	1	NA	NA	NA	13330	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.015000	0.502488	
mm_102615.1	chr11	62457841	62458041	-	1	NA	NA	NA	-519	NM_001039536	327942	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.055000	0.432836	
mm_69762.1	chr7	141009644	141009844	-	1	NA	NA	NA	1000	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.035000	0.512438	
mm_92491.1	chr10	78298210	78298410	-	1	NA	NA	NA	41897	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.025000	0.572139	
mm_67430.1	chr7	80370756	80370956	-	1	NA	NA	NA	519	NM_172903	140481	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	0.065000	0.611940	
mm_137484.1	chr17	26937875	26938075	+	1	NA	NA	NA	1483	NR_104458	67675	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	0.020000	0.477612	49(GGGCATTAAAAC,-,0.00)
mm_126447.1	chr15	80743716	80743916	+	1	NA	NA	NA	32503	NM_144812	213988	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.025000	0.527363	
mm_57549.1	chr6	126740518	126740718	-	1	NA	NA	NA	56	NM_013568	16494	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	0.035000	0.651741	
mm_11417.1	chr2	31680178	31680378	+	1	NA	NA	NA	-8259	NM_001283047	11350	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.005000	0.368159	
mm_116405.1	chr13	41425037	41425237	-	1	NA	NA	NA	62223	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.005000	0.497512	
mm_64367.1	chr7	142434886	142435086	+	1	NA	NA	NA	9	NM_018802	55925	Mm.213002	NM_018802	ENSMUSG00000031098	Syt8	-	synaptotagmin VIII	protein-coding	0.015000	0.592040	
mm_23860.1	chr3	83011300	83011500	+	1	NA	NA	NA	3676	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.005000	0.417910	
mm_24484.1	chr3	92024454	92024654	+	1	NA	NA	NA	9971	NM_207247	242100	Mm.297406	NM_207247	ENSMUSG00000042244	Pglyrp3	Gm420	peptidoglycan recognition protein 3	protein-coding	0.060000	0.567164	
mm_54703.1	chr6	39592438	39592638	-	1	NA	NA	NA	-45	NM_026612	68198	Mm.29415	NM_026612	ENSMUSG00000002416	Ndufb2	1810011O01Rik|8kDa|AGGG|AI325567|CI-AGGG	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2	protein-coding	0.070000	0.606965	
mm_19632.1	chr2	102813825	102814025	-	1	NA	NA	NA	87740	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.000000	0.343284	-57(TTTTTTAGAGTC,+,0.00)
mm_36921.1	chr4	108118656	108118856	-	1	NA	NA	NA	-209	NM_011327	20280	Mm.379011	NM_011327	ENSMUSG00000028603	Scp2	AA409774|AA409893|C76618|C79031|NSL-TP|SCP-2|SCP-X|SCPX|ns-LTP	sterol carrier protein 2, liver	protein-coding	0.015000	0.457711	
mm_15034.1	chr2	152754071	152754271	+	1	NA	NA	NA	-2	NM_053091	84682	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit IV isoform 2	protein-coding	0.080000	0.666667	
mm_103829.1	chr11	83020000	83020200	-	1	NA	NA	NA	622	NM_001167743	276950	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0.045000	0.621891	
mm_125933.1	chr15	76247570	76247770	+	1	NA	NA	NA	-521	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.020000	0.572139	
mm_90540.1	chr10	128091064	128091264	+	1	NA	NA	NA	-1619	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.025000	0.562189	
mm_30203.1	chr3	144720277	144720477	-	1	NA	NA	NA	-42	NM_001282037	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.145000	0.776119	
mm_90429.1	chr10	127515064	127515264	+	1	NA	NA	NA	225	NM_001098789	407790	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0.005000	0.557214	
mm_62323.1	chr7	100372204	100372404	+	1	NA	NA	NA	71	NM_001017985	277939	Mm.276374	NM_001017985	ENSMUSG00000047248	C2cd3	AU020772	C2 calcium-dependent domain containing 3	protein-coding	0.065000	0.597015	
mm_86579.1	chr10	12975609	12975809	+	1	NA	NA	NA	-11450	NM_001163591	74732	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.005000	0.512438	
mm_18947.1	chr2	76770454	76770654	-	1	NA	NA	NA	95239	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.015000	0.452736	
mm_122804.1	chr14	54554310	54554510	-	1	NA	NA	NA	-49	NM_145462	219072	Mm.202152	NM_145462	ENSMUSG00000022177	Haus4	9430093H08Rik|AU016300|D14Ertd500e	HAUS augmin-like complex, subunit 4	protein-coding	0.095000	0.636816	
mm_172509.1	chr7	7097940	7098140	-	1	NA	NA	NA	23436	NM_172738	232853	Mm.23838	NM_172738	ENSMUSG00000062116	Zfp954	5730403M16Rik|8030437F07|AA123315	zinc finger protein 954	protein-coding	0.020000	0.492537	
mm_79741.1	chr9	62351068	62351268	+	1	NA	NA	NA	9825	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.010000	0.323383	44(CCTTAAAAAATC,+,0.00)
mm_111161.1	chr12	83562334	83562534	-	1	NA	NA	NA	34713	NM_183154	217695	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0.000000	0.462687	
mm_67869.1	chr7	99164577	99164777	-	1	NA	NA	NA	18036	NM_026384	67800	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	0.035000	0.547264	-60(CCTTTTCAACAC,+,0.00)
mm_132502.1	chr16	36952434	36952634	+	1	NA	NA	NA	17551	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.005000	0.298507	
mm_73122.1	chr8	94780364	94780564	+	1	NA	NA	NA	8284	NM_009142	20312	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	0.030000	0.592040	
mm_138743.1	chr17	37002480	37002680	+	1	NA	NA	NA	55	NM_001013745	22715	Mm.305561	NM_009559	ENSMUSG00000036036	Zfp57	G19|Zfp-57	zinc finger protein 57	protein-coding	0.065000	0.577114	
mm_114178.1	chr13	55622942	55623142	+	1	NA	NA	NA	37	NM_007596	12328	Mm.2313	NM_007596	ENSMUSG00000021501	Caml	AI385748|Camlg	calcium modulating ligand	protein-coding	0.095000	0.631841	-57(GCCCCTTAGAGG,-,0.00)
mm_154857.1	chrX	20641801	20642001	+	1	NA	NA	NA	-16401	NM_001276316	22201	Mm.1104	NM_009457	ENSMUSG00000001924	Uba1	A1S9|Sbx|Ube-1|Ube1x	ubiquitin-like modifier activating enzyme 1	protein-coding	0.015000	0.592040	
mm_78146.1	chr9	21002801	21003001	+	1	NA	NA	NA	164	NM_023167	66163	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0.140000	0.686567	
mm_17342.1	chr2	26604069	26604269	-	1	NA	NA	NA	248	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.120000	0.721393	
mm_59860.1	chr7	30053964	30054164	+	1	NA	NA	NA	-2668	NM_178733	243906	Mm.347644	NM_011748	ENSMUSG00000053985	Zfp14	4732429I09Rik|Krox-9|Zfp-14|mKIAA1559	zinc finger protein 14	protein-coding	0.010000	0.462687	
mm_107018.1	chr12	12580834	12581034	+	1	NA	NA	NA	88983	NR_136889	102637952	Mm.421393	NR_136889		Gm34637	-	predicted gene, 34637	ncRNA	0.020000	0.537313	-100(CCCTTTCTAGCC,+,0.00)
mm_48484.1	chr5	142424722	142424922	-	1	NA	NA	NA	23325	NM_199068	17425	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf	forkhead box K1	protein-coding	0.025000	0.601990	
mm_162431.1	chr1	96313142	96313342	+	1	NA	NA	NA	-291484	NR_040467	73454	Mm.396229	NR_040467	ENSMUSG00000100062	1700063A18Rik	-	RIKEN cDNA 1700063A18 gene	ncRNA	0.015000	0.527363	15(GCCCATTTAGGG,-,0.00),17(CCATTTAGGGGA,+,0.00)
mm_47853.1	chr5	134552162	134552362	-	1	NA	NA	NA	172	NM_001039162	269713	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.125000	0.721393	
mm_24811.1	chr3	95588900	95589100	+	1	NA	NA	NA	66	NM_001177670	229593	Mm.245830	NM_146133	ENSMUSG00000046519	Golph3l	2010204I15Rik|AU015439|AW549227|C77637|Gpp34r	golgi phosphoprotein 3-like	protein-coding	0.030000	0.512438	
mm_110421.1	chr12	46818045	46818245	-	1	NA	NA	NA	630	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.055000	0.477612	
mm_149022.1	chr19	8757013	8757213	+	1	NA	NA	NA	-4	NM_001276704	53319	Mm.7271	NM_016813	ENSMUSG00000010097	Nxf1	Mex67|Mvb1|Tap	nuclear RNA export factor 1	protein-coding	0.140000	0.696517	
mm_88899.1	chr10	81167931	81168131	+	1	NA	NA	NA	-311	NM_021501	59004	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0.040000	0.472637	
mm_63390.1	chr7	127233172	127233372	+	1	NA	NA	NA	-142	NR_030674	100043580	Mm.482209	NR_030674	ENSMUSG00000000486	Gm4532	-	predicted gene 4532	ncRNA	0.140000	0.776119	
mm_102674.1	chr11	65243487	65243687	-	1	NA	NA	NA	26402	NM_145136	214384	Mm.32257	NM_145136	ENSMUSG00000020542	Myocd	BSAC2A|Srfcp	myocardin	protein-coding	0.005000	0.487562	
mm_154247.1	chr19	60766474	60766674	-	1	NA	NA	NA	7811	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.040000	0.577114	
mm_122879.1	chr14	54926497	54926697	-	1	NA	NA	NA	191	NM_010112	13644	Mm.236438	NM_010112	ENSMUSG00000022203	Efs	-	embryonal Fyn-associated substrate	protein-coding	0.060000	0.666667	
mm_167006.1	chr7	51879096	51879296	+	1	NA	NA	NA	229	NM_001330607	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.050000	0.701493	
mm_17428.1	chr2	27475506	27475706	-	1	NA	NA	NA	67	NM_001113573	67382	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	0.145000	0.716418	
mm_71723.1	chr8	61976159	61976359	+	1	NA	NA	NA	48172	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.005000	0.482587	
mm_166061.1	chr4	133973676	133973876	+	1	NA	NA	NA	-5785	NM_016957	15331	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	0.000000	0.447761	
mm_45334.1	chr5	65693155	65693355	-	1	NA	NA	NA	4601	NM_001081321	71521	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0.000000	0.283582	
mm_135438.1	chr16	45383166	45383366	-	1	NA	NA	NA	25787	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.020000	0.472637	
mm_23136.1	chr3	38885222	38885422	+	1	NA	NA	NA	-1618	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.050000	0.542289	
mm_97034.1	chr11	72267159	72267359	+	1	NA	NA	NA	415	NR_045922	73366	Mm.396157	NR_045922	ENSMUSG00000086951	1700051A21Rik	-	RIKEN cDNA 1700051A21 gene	ncRNA	0.100000	0.621891	
mm_8803.1	chr1	161855456	161855656	-	1	NA	NA	NA	21105	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.000000	0.308458	
mm_53665.1	chr6	141524565	141524765	+	1	NA	NA	NA	279	NM_021471	58807	Mm.284495	NM_021471	ENSMUSG00000030235	Slco1c1	OATP-14|OATP-F|Oatp2|Oatpf|Slc21a14	solute carrier organic anion transporter family, member 1c1	protein-coding	0.005000	0.482587	
mm_147559.1	chr18	54987953	54988153	-	1	NA	NA	NA	2127	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.055000	0.626866	
mm_147000.1	chr18	34372396	34372596	-	1	NA	NA	NA	919	NM_007874	13476	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0.035000	0.552239	
mm_155573.1	chrX	77511019	77511219	+	1	NA	NA	NA	-108	NM_020601	21372	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	0.150000	0.751244	
mm_1195.1	chr1	62703864	62704064	+	1	NA	NA	NA	647	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.030000	0.467662	
mm_125495.1	chr15	55112336	55112536	+	1	NA	NA	NA	119	NM_145470	97998	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	0.095000	0.671642	
mm_138083.1	chr17	33996153	33996353	+	1	NA	NA	NA	4080	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.000000	0.512438	
mm_162740.1	chr10	56388920	56389120	+	1	NA	NA	NA	11720	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.000000	0.363184	
mm_153221.1	chr19	34811927	34812127	-	1	NA	NA	NA	8746	NR_029783	723826		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	0.010000	0.338308	
mm_172143.1	chr6	37686643	37686843	-	1	NA	NA	NA	156570	NM_145364	208665	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0.045000	0.517413	
mm_97616.1	chr11	78952826	78953026	+	1	NA	NA	NA	27635	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.040000	0.611940	
mm_125265.1	chr15	35491901	35492101	+	1	NA	NA	NA	120455	NM_177151	666173	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0.005000	0.323383	
mm_84495.1	chr9	66881447	66881647	-	1	NA	NA	NA	38158	NM_173413	235442	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.000000	0.378109	
mm_41855.1	chr5	104440191	104440391	+	1	NA	NA	NA	4099	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.015000	0.482587	
mm_32571.1	chr4	109977884	109978084	+	1	NA	NA	NA	-41	NM_172296	242620	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0.090000	0.661692	
mm_84421.1	chr9	65629796	65629996	-	1	NA	NA	NA	-686	NM_028030	71973	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	0.020000	0.487562	
mm_167346.1	chr8	80493875	80494075	+	1	NA	NA	NA	-70	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.020000	0.497512	
mm_63597.1	chr7	128141840	128142040	+	1	NA	NA	NA	12372	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.010000	0.552239	
mm_166883.1	chr7	26222710	26222910	+	1	NA	NA	NA	-44021	NM_001167540	100312477	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	0.000000	0.348259	
mm_140976.1	chr17	24696447	24696647	-	1	NA	NA	NA	313	NM_027988	71893	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	0.065000	0.582090	
mm_115298.1	chr13	112001321	112001521	+	1	NA	NA	NA	133485	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.035000	0.522388	
mm_112885.1	chr13	20859492	20859692	+	1	NA	NA	NA	65479	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.442786	
mm_144211.1	chr18	9724640	9724840	+	1	NA	NA	NA	17092	NM_130449	140792	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.000000	0.308458	
mm_54501.1	chr6	35510303	35510503	-	1	NA	NA	NA	29485	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.378109	
mm_97161.1	chr11	75486701	75486901	+	1	NA	NA	NA	24	NM_138659	192159	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	0.085000	0.611940	
mm_141816.1	chr17	34606252	34606452	-	1	NA	NA	NA	491	NM_001163379	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.055000	0.641791	-78(CCTTTTCAAGAC,+,0.00)
mm_97707.1	chr11	80178459	80178659	+	1	NA	NA	NA	-5313	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.010000	0.537313	
mm_49086.1	chr6	6863675	6863875	+	1	NA	NA	NA	441	NM_010057	13396	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding	0.105000	0.676617	
mm_114189.1	chr13	55714668	55714868	+	1	NA	NA	NA	118	NM_175150	69672	Mm.294457	NM_175150	ENSMUSG00000021497	Txndc15	2310047H23Rik|AI854086|C5orf14|UNQ335	thioredoxin domain containing 15	protein-coding	0.105000	0.716418	
mm_79559.1	chr9	58026857	58027057	+	1	NA	NA	NA	-5317	NM_001243265	330951	Mm.406992	NM_001243265		Gm16130	E330033L03|OTTMUSG00000030814	predicted gene 16130	protein-coding	0.005000	0.502488	
mm_171825.1	chr5	142904039	142904239	-	1	NA	NA	NA	2615	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.010000	0.482587	
mm_116524.1	chr13	45790359	45790559	-	1	NA	NA	NA	174532	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.005000	0.383085	
mm_45308.1	chr5	65427438	65427638	-	1	NA	NA	NA	8304	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.035000	0.467662	
mm_144718.1	chr18	35119325	35119525	+	1	NA	NA	NA	513	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.070000	0.616915	
mm_120736.1	chr14	73168871	73169071	+	1	NA	NA	NA	26186	NR_033185	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.010000	0.303483	-23(GCATAAATAGAG,+,0.00)
mm_79209.1	chr9	49028034	49028234	+	1	NA	NA	NA	-27447	NM_012039	26951	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	0.025000	0.517413	
mm_12057.1	chr2	59338599	59338799	+	1	NA	NA	NA	47983	NR_040510	76676	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.035000	0.502488	
mm_117286.1	chr13	66062894	66063094	-	1	NA	NA	NA	-50459	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.035000	0.492537	
mm_128297.1	chr15	37432952	37433152	-	1	NA	NA	NA	-388	NR_045283	100503538	Mm.445166	NR_045283	ENSMUSG00000086992	Gm15941	OTTMUSG00000028027	predicted gene 15941	ncRNA	0.005000	0.502488	
mm_84562.1	chr9	67817905	67818105	-	1	NA	NA	NA	14325	NM_001163143	244911	Mm.325849	NM_001163143	ENSMUSG00000047990	C2cd4a	EG244911|Fam148a	C2 calcium-dependent domain containing 4A	protein-coding	0.010000	0.507463	
mm_41922.1	chr5	105610221	105610421	+	1	NA	NA	NA	-89648	NM_001122768	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.010000	0.427861	
mm_148747.1	chr19	6046968	6047168	+	1	NA	NA	NA	-77	NM_001164709	74126	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0.110000	0.681592	
mm_96350.1	chr11	66956601	66956801	+	1	NA	NA	NA	63	NR_130315	71576	Mm.340077	NR_130315	ENSMUSG00000085683	9130409J20Rik	-	RIKEN cDNA 9130409J20 gene	ncRNA	0.030000	0.557214	
mm_126667.1	chr15	84324620	84324820	+	1	NA	NA	NA	0	NM_022321	64099	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0.020000	0.552239	
mm_26232.1	chr3	139205828	139206028	+	1	NA	NA	NA	35	NM_198659	381476	Mm.188334	NM_198659	ENSMUSG00000047940	Stpg2	B930007M17Rik|Gm1017	sperm tail PG rich repeat containing 2	protein-coding	0.080000	0.646766	
mm_162977.1	chr11	19008989	19009189	+	1	NA	NA	NA	9880	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.010000	0.527363	
mm_87596.1	chr10	57632014	57632214	+	1	NA	NA	NA	133	NM_001039051	18768	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.110000	0.731343	
mm_168720.1	chr12	109453356	109453556	+	1	NA	NA	NA	1	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.140000	0.791045	
mm_113413.1	chr13	34002336	34002536	+	1	NA	NA	NA	358	NM_001243192	20719	Mm.252210	NM_009254	ENSMUSG00000060147	Serpinb6a	4930482L21Rik|D330015H01Rik|PI-6|Serpinb6|Spi3|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6a	protein-coding	0.120000	0.751244	
mm_55373.1	chr6	57825194	57825394	-	1	NA	NA	NA	-169	NM_146168	232023	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.055000	0.577114	-23(TCCTATAAAAAC,-,0.00)
mm_144141.1	chr18	4994555	4994755	+	1	NA	NA	NA	-51934	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.020000	0.527363	-71(GGCCATAAAAGG,-,0.00)
mm_9164.1	chr1	170968115	170968315	-	1	NA	NA	NA	7856	NM_001077189	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.020000	0.547264	
mm_119854.1	chr14	54442075	54442275	+	1	NA	NA	NA	10577	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.015000	0.442786	
mm_43666.1	chr5	138754714	138754914	+	1	NA	NA	NA	-267	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.105000	0.736318	
mm_159241.1	chr2	150218003	150218203	+	1	NA	NA	NA	4	NM_001142411	245174	Mm.378428	NM_001142411	ENSMUSG00000060336	Zfp937	EG245174|Gm4979|ZIPO-I	zinc finger protein 937	protein-coding	0.035000	0.517413	
mm_101272.1	chr11	21370552	21370752	-	1	NA	NA	NA	-23	NM_139297	216558	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0.115000	0.716418	-64(GGCTATTTATGG,-,0.00),-62(CTATTTATGGGC,+,0.00)
mm_101248.1	chr11	20741839	20742039	-	1	NA	NA	NA	-383	NM_181411	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.050000	0.512438	
mm_108125.1	chr12	75983574	75983774	+	1	NA	NA	NA	74571	NR_039560	100628610		NR_039560	ENSMUSG00000092922	Mir5101	mmu-mir-5101|mu-mir-5101	microRNA 5101	ncRNA	0.015000	0.447761	
mm_125016.1	chr15	25626329	25626529	+	1	NA	NA	NA	3879	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.015000	0.452736	
mm_81348.1	chr9	108567433	108567633	+	1	NA	NA	NA	-191	NM_023247	66706	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	0.065000	0.626866	
mm_24803.1	chr3	95555998	95556198	+	1	NA	NA	NA	-3579	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.010000	0.303483	-22(CTTTTTATAGTT,+,0.00)
mm_100201.1	chr11	116813130	116813330	+	1	NA	NA	NA	14816	NM_026280	67622	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0.035000	0.562189	
mm_9126.1	chr1	170589660	170589860	-	1	NA	NA	NA	89	NM_001109985	70729	Mm.487078	NM_027528	ENSMUSG00000038473	Nos1ap	6330408P19Rik|Capon	nitric oxide synthase 1 (neuronal) adaptor protein	protein-coding	0.155000	0.771144	
mm_100304.1	chr11	117952371	117952571	+	1	NA	NA	NA	16895	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.020000	0.606965	
mm_132341.1	chr16	33829696	33829896	+	1	NA	NA	NA	131	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.145000	0.751244	
mm_115536.1	chr13	6604946	6605146	-	1	NA	NA	NA	43725	NM_019703	56421	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.020000	0.532338	
mm_143112.1	chr17	57198207	57198407	-	1	NA	NA	NA	-4126	NM_019418	50930	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0.005000	0.517413	
mm_108644.1	chr12	85956310	85956510	+	1	NA	NA	NA	122631	NM_009368	21809	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.025000	0.547264	
mm_74208.1	chr8	123893542	123893742	+	1	NA	NA	NA	1133	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.045000	0.577114	
mm_99629.1	chr11	105126393	105126593	+	1	NA	NA	NA	68	NM_172567	52686	Mm.270091	NM_172567	ENSMUSG00000020691	Mettl2	2810438F06Rik|AW493404|C130031G21Rik|D11Ertd768e|METL|PSENIP1	methyltransferase like 2	protein-coding	0.110000	0.676617	
mm_53801.1	chr6	146850005	146850205	+	1	NA	NA	NA	-5	NM_027059	69371	Mm.252733	NM_027059	ENSMUSG00000030292	Smco2	1700023A16Rik	single-pass membrane protein with coiled-coil domains 2	protein-coding	0.015000	0.582090	
mm_148055.1	chr18	72141608	72141808	-	1	NA	NA	NA	209361	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.000000	0.333333	
mm_25201.1	chr3	103787430	103787630	+	1	NA	NA	NA	3745	NM_001301306	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.020000	0.442786	
mm_154360.1	chrM	6249	6449	+	1	NA	NA	NA	NA	NA									0.030000	0.388060	
mm_27717.1	chr3	68780329	68780529	-	1	NA	NA	NA	89005	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.025000	0.467662	-97(CTGTTTAAAAGT,-,0.00),-36(CCGTATAAAAAC,-,0.00)
mm_13651.1	chr2	114054339	114054539	+	1	NA	NA	NA	43	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.010000	0.512438	
mm_42100.1	chr5	110344679	110344879	+	1	NA	NA	NA	49	NM_001310709	381667	Mm.332572	NM_001033459	ENSMUSG00000072754	Lrcol1	Clpsl3|Gm1679	leucine rich colipase-like 1	protein-coding	0.010000	0.527363	
mm_27032.1	chr3	26153901	26154101	-	1	NA	NA	NA	-694	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.025000	0.447761	
mm_107807.1	chr12	65036730	65036930	+	1	NA	NA	NA	496	NM_177806	328110	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	0.040000	0.477612	57(GCTTATATAGAT,+,0.00)
mm_120213.1	chr14	62555571	62555771	+	1	NA	NA	NA	-66	NM_001243857	629059	Mm.291864	NM_001243857	ENSMUSG00000035184	Fam124a	EG629059	family with sequence similarity 124, member A	protein-coding	0.165000	0.766169	
mm_43594.1	chr5	137761597	137761797	+	1	NA	NA	NA	15728	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.020000	0.537313	
mm_99774.1	chr11	107137717	107137917	+	1	NA	NA	NA	-5895	NM_176850	207165	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0.015000	0.472637	
mm_131692.1	chr16	20691708	20691908	+	1	NA	NA	NA	-3249	NM_133778	78408	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0.005000	0.338308	
mm_91200.1	chr10	21160750	21160950	-	1	NA	NA	NA	134	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.085000	0.646766	
mm_28098.1	chr3	86142515	86142715	-	1	NA	NA	NA	53	NM_016959	20091	Mm.391785	NM_016959	ENSMUSG00000028081	Rps3a1	Rps3a	ribosomal protein S3A1	protein-coding	0.115000	0.606965	
mm_29393.1	chr3	108904256	108904456	-	1	NA	NA	NA	7348	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.030000	0.487562	
mm_130320.1	chr15	97469172	97469372	-	1	NA	NA	NA	-221985	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.020000	0.567164	51(CTTCTTAAAAGC,-,0.00)
mm_74407.1	chr8	3467611	3467811	-	1	NA	NA	NA	-63	NM_026951	69129	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	0.070000	0.601990	
mm_85282.1	chr9	99692395	99692595	-	1	NA	NA	NA	17568	NM_019815	56492	Mm.386784	NM_019815	ENSMUSG00000032473	Cldn18	-	claudin 18	protein-coding	0.010000	0.407960	
mm_91965.1	chr10	61383252	61383452	-	1	NA	NA	NA	171	NM_013753	27355	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.130000	0.761194	
mm_104343.1	chr11	94242615	94242815	-	1	NA	NA	NA	-136	NM_181819	278507	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	0.010000	0.597015	
mm_56610.1	chr6	112489724	112489924	-	1	NA	NA	NA	-16	NM_001081147	18430	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding	0.080000	0.676617	-35(CACTTTAAAGAG,-,0.00),-33(CTTTAAAGAGCC,+,0.00)
mm_24974.1	chr3	96757871	96758071	+	1	NA	NA	NA	30360	NM_026406	67845	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.030000	0.492537	
mm_14533.1	chr2	132781517	132781717	+	1	NA	NA	NA	339	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.115000	0.751244	
mm_12372.1	chr2	69821930	69822130	+	1	NA	NA	NA	-340	NM_177784	277396	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	0.020000	0.457711	
mm_84717.1	chr9	73967717	73967917	-	1	NA	NA	NA	-34250	NM_001081153	208898	Mm.41035	NM_001081153	ENSMUSG00000062151	Unc13c	1500037O19Rik|AU019458|D9Ertd414e|Munc13-3|Unc13h3	unc-13 homolog C (C. elegans)	protein-coding	0.020000	0.427861	
mm_22771.1	chr3	20251875	20252075	+	1	NA	NA	NA	-9794	NM_007753	12873	Mm.1135	NM_007753	ENSMUSG00000001865	Cpa3	MC-CPA	carboxypeptidase A3, mast cell	protein-coding	0.015000	0.437811	
mm_162026.1	chr19	47143838	47144038	-	1	NA	NA	NA	236	NM_001081271	546729	Mm.439624	NM_001081271	ENSMUSG00000079258	Calhm1	EG546729	calcium homeostasis modulator 1	protein-coding	0.045000	0.582090	
mm_111624.1	chr12	102421421	102421621	-	1	NA	NA	NA	18292	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.015000	0.532338	
mm_162122.1	chrX	69944998	69945198	+	1	NA	NA	NA	-183	NM_029316	75509	Mm.233475	NM_029316	ENSMUSG00000059690	1700020N15Rik	-	RIKEN cDNA 1700020N15 gene	protein-coding	0.010000	0.527363	
mm_15112.1	chr2	153649395	153649595	+	1	NA	NA	NA	46	NM_001271747	13436	Mm.89772	NM_010068	ENSMUSG00000027478	Dnmt3b	MmuIIIB	DNA methyltransferase 3B	protein-coding	0.165000	0.815920	
mm_156233.1	chrX	135885823	135886023	+	1	NA	NA	NA	72	NM_198161	70237	Mm.440847	NM_198161	ENSMUSG00000072964	Bhlhb9	2700087I09Rik	basic helix-loop-helix domain containing, class B9	protein-coding	0.085000	0.671642	
mm_19384.1	chr2	91236799	91236999	-	1	NA	NA	NA	167	NM_028119	107986	Mm.389334	NM_028119	ENSMUSG00000002109	Ddb2	2610043A19Rik	damage specific DNA binding protein 2	protein-coding	0.075000	0.557214	
mm_148424.1	chr19	3941428	3941628	+	1	NA	NA	NA	6342	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.015000	0.527363	
mm_96241.1	chr11	62551754	62551954	+	1	NA	NA	NA	123	NM_001313984	22187	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.065000	0.477612	
mm_114569.1	chr13	74692129	74692329	+	1	NA	NA	NA	42032	NM_001301158	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.010000	0.427861	
mm_20323.1	chr2	127337681	127337881	-	1	NA	NA	NA	-858	NM_172539	215095	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	0.020000	0.606965	
mm_79807.1	chr9	64177286	64177486	+	1	NA	NA	NA	-1911	NM_183316	330959	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	0.020000	0.482587	-76(TCCTCTTAAAGG,-,0.00),-75(CCTCTTAAAGGT,+,0.00)
mm_44475.1	chr5	23433225	23433425	-	1	NA	NA	NA	1028	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.075000	0.597015	
mm_170852.1	chr2	177925556	177925756	-	1	NA	NA	NA	-6	NM_183135	78703		NM_183135	ENSMUSG00000074529	Zfp972	C330013J21Rik	zinc finger protein 972	protein-coding	0.015000	0.482587	
mm_109426.1	chr12	110601345	110601545	+	1	NA	NA	NA	50	NM_030238	13424	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0.170000	0.766169	-6(GCCTTTAGGGCG,+,0.00)
mm_48162.1	chr5	137152725	137152925	-	1	NA	NA	NA	-36618	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.477612	
mm_80555.1	chr9	83112488	83112688	+	1	NA	NA	NA	34019	NM_175074	94353	Mm.244426	NM_026122	ENSMUSG00000066456	Hmgn3	1110002A15Rik|6330514M13Rik|BB071015|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding	0.015000	0.467662	
mm_51319.1	chr6	72314641	72314841	+	1	NA	NA	NA	10131	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.005000	0.393035	
mm_7150.1	chr1	91405931	91406131	-	1	NA	NA	NA	-2	NR_026924	67086	Mm.396158	NR_026924	ENSMUSG00000100253	1700020N18Rik	-	RIKEN cDNA 1700020N18 gene	ncRNA	0.070000	0.646766	
mm_116857.1	chr13	54765504	54765704	-	1	NA	NA	NA	836	NM_033610	104069	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	0.035000	0.626866	
mm_97297.1	chr11	76493894	76494094	+	1	NA	NA	NA	501	NM_001346670	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.005000	0.567164	
mm_127888.1	chr15	9140243	9140443	-	1	NA	NA	NA	111	NM_013787	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.085000	0.626866	
mm_46952.1	chr5	114952620	114952820	-	1	NA	NA	NA	10518	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.025000	0.636816	
mm_81369.1	chr9	108808299	108808499	+	1	NA	NA	NA	19	NM_030729	80987	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	0.175000	0.776119	
mm_16121.1	chr2	170131253	170131453	+	1	NA	NA	NA	-133	NM_001033299	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.195000	0.815920	
mm_85893.1	chr9	111055337	111055537	-	1	NA	NA	NA	1807	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.030000	0.477612	-61(GCCTTTATGAGA,-,0.00)
mm_45263.1	chr5	64093442	64093642	-	1	NA	NA	NA	592	NM_025700	66681	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	0.025000	0.532338	
mm_149870.1	chr19	25155682	25155882	+	1	NA	NA	NA	-81420	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.025000	0.487562	
mm_149234.1	chr19	10182900	10183100	+	1	NA	NA	NA	112	NM_146094	76267	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0.135000	0.746269	
mm_9442.1	chr1	172588491	172588691	-	1	NA	NA	NA	1977	NM_029084	74748	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	0.010000	0.611940	
mm_133517.1	chr16	90826650	90826850	+	1	NA	NA	NA	31	NM_001316760	70967	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	0.020000	0.432836	34(CTCTTGAAAAGG,-,0.00)
mm_5213.1	chr1	13660362	13660562	-	1	NA	NA	NA	47	NM_145381	212442	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	0.105000	0.681592	
mm_59616.1	chr7	28146929	28147129	+	1	NA	NA	NA	17563	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.601990	
mm_162284.1	chr1	22469161	22469361	-	1	NA	NA	NA	-36418	NM_183018	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.015000	0.303483	
mm_10122.1	chr2	3749182	3749382	+	1	NA	NA	NA	35824	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.020000	0.557214	
mm_101128.1	chr11	12309666	12309866	-	1	NA	NA	NA	102374	NM_001282994	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.010000	0.547264	
mm_83510.1	chr9	45984693	45984893	-	1	NA	NA	NA	78	NM_008775	18475	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0.125000	0.721393	
mm_11527.1	chr2	32625370	32625570	+	1	NA	NA	NA	33	NM_001198791	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.045000	0.646766	-15(CCTTATAAATAG,+,0.00)
mm_107136.1	chr12	21316293	21316493	+	1	NA	NA	NA	1	NM_026347	67732	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	0.090000	0.666667	
mm_54367.1	chr6	31126453	31126653	-	1	NA	NA	NA	-63460	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.025000	0.537313	
mm_126090.1	chr15	77905528	77905728	+	1	NA	NA	NA	23366	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.030000	0.542289	
mm_40190.1	chr5	36484499	36484699	+	1	NA	NA	NA	11	NM_025725	66717	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	0.090000	0.631841	
mm_120091.1	chr14	57889686	57889886	+	1	NA	NA	NA	476	NM_029492	75965	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|ENSMUSG00000055956|HK11	zinc finger, DHHC domain containing 20	protein-coding	0.075000	0.606965	
mm_133393.1	chr16	84774208	84774408	+	1	NA	NA	NA	185	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.070000	0.666667	
mm_72427.1	chr8	82863274	82863474	+	1	NA	NA	NA	18	NM_177378	330812	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	0.030000	0.542289	
mm_63923.1	chr7	139360185	139360385	+	1	NA	NA	NA	-28824	NM_183144	212111	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.005000	0.407960	-33(GTATTTATAAGG,-,0.00)
mm_116218.1	chr13	32845711	32845911	-	1	NA	NA	NA	5374	NM_025429	66222	Mm.20144	NM_025429	ENSMUSG00000044734	Serpinb1a	1190005M04Rik|AI325983|EI|EIA|ELANH2|LEI|M/NEI|MNEI|PI2	serine (or cysteine) peptidase inhibitor, clade B, member 1a	protein-coding	0.000000	0.383085	-33(ACCTTTAAAAAA,-,0.00),-32(CCTTTAAAAAAG,+,0.00)
mm_51633.1	chr6	85587511	85587711	+	1	NA	NA	NA	80	NM_145223	236266	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	Alstrom syndrome 1	protein-coding	0.075000	0.691542	
mm_155793.1	chrX	98936216	98936416	+	1	NA	NA	NA	-1465	NM_207633	77929	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	0.005000	0.437811	
mm_101071.1	chr11	11462341	11462541	-	1	NA	NA	NA	-22	NM_001185153	53604	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	0.030000	0.552239	
mm_106724.1	chr12	3871260	3871460	+	1	NA	NA	NA	-9116	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.030000	0.601990	
mm_152745.1	chr19	19079444	19079644	-	1	NA	NA	NA	31652	NM_001043354	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.010000	0.268657	
mm_123876.1	chr14	72669268	72669468	-	1	NA	NA	NA	40635	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.005000	0.363184	
mm_16149.1	chr2	172288052	172288252	+	1	NA	NA	NA	39660	NM_008561	17201	Mm.57183	NM_008561	ENSMUSG00000038537	Mc3r	MC3-R	melanocortin 3 receptor	protein-coding	0.005000	0.522388	
mm_65997.1	chr7	30558645	30558845	-	1	NA	NA	NA	901	NM_029377	75660	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	0.005000	0.482587	
mm_21378.1	chr2	157407514	157407714	-	1	NA	NA	NA	-16679	NM_009271	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.025000	0.537313	
mm_19370.1	chr2	91183732	91183932	-	1	NA	NA	NA	-785	NM_145527	228355	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0.030000	0.557214	69(CCTTTAATGATC,+,0.00)
mm_6742.1	chr1	83277056	83277256	-	1	NA	NA	NA	117394	NM_027725	71227	Mm.256482	NM_027725	ENSMUSG00000053161	Daw1	4930563E19Rik|4933429D11Rik|Wdr69|b2b1116Clo|b2b1584Clo	dynein assembly factor with WDR repeat domains 1	protein-coding	0.045000	0.502488	
mm_62069.1	chr7	92638201	92638401	+	1	NA	NA	NA	-1159	NM_028665	73845	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	0.000000	0.363184	
mm_12574.1	chr2	73267901	73268101	+	1	NA	NA	NA	-3925	NM_001005343	381373	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0.015000	0.482587	
mm_109432.1	chr12	110628681	110628881	+	1	NA	NA	NA	27386	NM_030238	13424	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0.025000	0.507463	
mm_33513.1	chr4	130926672	130926872	+	1	NA	NA	NA	13438	NM_010686	16792	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3	lysosomal-associated protein transmembrane 5	protein-coding	0.020000	0.601990	
mm_86920.1	chr10	23851428	23851628	+	1	NA	NA	NA	66	NM_011979	26464	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	0.015000	0.402985	
mm_90817.1	chr10	7919782	7919982	-	1	NA	NA	NA	36241	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.015000	0.517413	
mm_108901.1	chr12	100199450	100199650	+	1	NA	NA	NA	115	NM_009790	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.140000	0.676617	
mm_24950.1	chr3	96630084	96630284	+	1	NA	NA	NA	256	NM_001102407	60365	Mm.261972	NM_025875	ENSMUSG00000038374	Rbm8a	2310057C03Rik|AA673428|Rbm8	RNA binding motif protein 8a	protein-coding	0.030000	0.437811	
mm_66276.1	chr7	37591049	37591249	-	1	NA	NA	NA	178603	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.025000	0.358209	58(CTGTTTATAAAG,-,0.00),60(GTTTATAAAGAA,+,0.00)
mm_134048.1	chr16	5227728	5227928	-	1	NA	NA	NA	-5529	NM_001033220	239691	Mm.325639	NM_001033220	ENSMUSG00000051669	AU021092	-	expressed sequence AU021092	protein-coding	0.035000	0.462687	-34(TGCTTTAAAAAG,-,0.00)
mm_11585.1	chr2	33177803	33178003	+	1	NA	NA	NA	-38058	NM_011923	26360	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0.030000	0.562189	
mm_19596.1	chr2	102400291	102400491	-	1	NA	NA	NA	509	NM_020267	80985	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	0.095000	0.641791	
mm_134390.1	chr16	17356087	17356287	-	1	NA	NA	NA	24816	NM_001331047	15160	Mm.6609	NM_008223	ENSMUSG00000022766	Serpind1	AA985900|AI303446|HC-II|HCII|Hcf2	serine (or cysteine) peptidase inhibitor, clade D, member 1	protein-coding	0.025000	0.442786	
mm_16982.1	chr2	18047693	18047893	-	1	NA	NA	NA	656	NM_028317	72668	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113	SKI/DACH domain containing 1	protein-coding	0.110000	0.611940	
mm_126254.1	chr15	79030849	79031049	+	1	NA	NA	NA	75	NM_001161712	26912	Mm.237085	NM_013847	ENSMUSG00000006378	Gcat	AI526977|Kbl	glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)	protein-coding	0.090000	0.676617	
mm_12939.1	chr2	85136307	85136507	+	1	NA	NA	NA	47	NM_011784	23796	Mm.29368	NM_011784	ENSMUSG00000044338	Aplnr	APJ|Agtrl1|msr/apj	apelin receptor	protein-coding	0.020000	0.601990	
mm_48664.1	chr5	145981168	145981368	-	1	NA	NA	NA	28349	NM_019792	56388	Mm.301900	NM_019792	ENSMUSG00000029630	Cyp3a25	AI327008	cytochrome P450, family 3, subfamily a, polypeptide 25	protein-coding	0.000000	0.283582	-63(AAGTCTAAAAGC,-,0.00)
mm_16684.1	chr2	6884424	6884624	-	1	NA	NA	NA	472	NM_010160	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.025000	0.437811	
mm_152354.1	chr19	10001529	10001729	-	1	NA	NA	NA	4	NM_011913	24115	Mm.31577	NM_011913	ENSMUSG00000037418	Best1	Bmd|Vmd2|mBest1	bestrophin 1	protein-coding	0.005000	0.547264	
mm_62341.1	chr7	100498006	100498206	+	1	NA	NA	NA	4748	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.040000	0.651741	
mm_151478.1	chr19	58674974	58675174	+	1	NA	NA	NA	4709	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.000000	0.477612	
mm_129270.1	chr15	77015969	77016169	-	1	NA	NA	NA	6658	NM_001164048	17189	Mm.404074	NM_013593	ENSMUSG00000018893	Mb	AI325109	myoglobin	protein-coding	0.020000	0.512438	
mm_158087.1	chrX	101268124	101268324	-	1	NA	NA	NA	31	NM_001308535	16186	Mm.2923	NM_013563	ENSMUSG00000031304	Il2rg	CD132|[g]c|gamma(c)|gc|p64	interleukin 2 receptor, gamma chain	protein-coding	0.015000	0.482587	
mm_123182.1	chr14	57744553	57744753	-	1	NA	NA	NA	1470	NM_015771	50523	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.025000	0.472637	19(GGCCCTTAAAAC,-,0.00),21(CCCTTAAAACCC,+,0.00)
mm_102496.1	chr11	60352830	60353030	-	1	NA	NA	NA	-25	NM_001039092	216810	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	0.090000	0.681592	
mm_95936.1	chr11	58382218	58382418	+	1	NA	NA	NA	1672	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.025000	0.552239	
mm_91222.1	chr10	22058497	22058697	-	1	NA	NA	NA	9482	NM_053264	114671	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	0.055000	0.666667	
mm_46229.1	chr5	99037277	99037477	-	1	NA	NA	NA	-298	NM_008926	19092	Mm.263002	NM_008926	ENSMUSG00000029334	Prkg2	AW212535|CGKII|Prkgr2|cGK-II	protein kinase, cGMP-dependent, type II	protein-coding	0.095000	0.592040	
mm_132442.1	chr16	35948213	35948413	+	1	NA	NA	NA	-9286	NM_001013371	209200	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0.020000	0.502488	
mm_159404.1	chr3	98563289	98563489	-	1	NA	NA	NA	554	NM_001111336	15495	Mm.14309	NM_008294	ENSMUSG00000095143	Hsd3b4	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	protein-coding	0.015000	0.522388	
mm_36932.1	chr4	108460608	108460808	-	1	NA	NA	NA	1282	NM_175472	230594	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.060000	0.562189	
mm_20217.1	chr2	125737788	125737988	-	1	NA	NA	NA	-13740	NM_199022	271849	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding	0.005000	0.333333	
mm_67022.1	chr7	66332446	66332646	-	1	NA	NA	NA	49178	NR_106024	102465640		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.025000	0.557214	
mm_1922.1	chr1	86039569	86039769	+	1	NA	NA	NA	-6194	NM_001144993	72792	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	0.005000	0.482587	
mm_45800.1	chr5	87568819	87569019	-	1	NA	NA	NA	87	NM_016771	53315	Mm.6824	NM_016771	ENSMUSG00000029273	Sult1d1	5033411P13Rik|AI987815|ST1d1|SULT-N|Sultn	sulfotransferase family 1D, member 1	protein-coding	0.015000	0.398010	53(TCCTTTTAAAGA,-,0.00),54(CCTTTTAAAGAC,+,0.00)
mm_99470.1	chr11	102436025	102436225	+	1	NA	NA	NA	5803	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.035000	0.562189	
mm_3633.1	chr1	152807811	152808011	+	1	NA	NA	NA	7758	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.045000	0.567164	
mm_72838.1	chr8	88290464	88290664	+	1	NA	NA	NA	1498	NM_001037723	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.020000	0.542289	
mm_22182.1	chr2	173217592	173217792	-	1	NA	NA	NA	1230	NM_021394	58203	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.005000	0.567164	
mm_56110.1	chr6	87503648	87503848	-	1	NA	NA	NA	-7421	NM_175476	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.000000	0.457711	
mm_116657.1	chr13	49190103	49190303	-	1	NA	NA	NA	2656	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.020000	0.616915	
mm_140858.1	chr17	23740188	23740388	-	1	NA	NA	NA	42	NM_023824	76498	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	0.120000	0.731343	
mm_39682.1	chr5	25768409	25768609	+	1	NA	NA	NA	8536	NM_001004365	242894	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	0.005000	0.288557	
mm_152314.1	chr19	9899376	9899576	-	1	NA	NA	NA	57	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.105000	0.582090	
mm_9917.1	chr1	189277682	189277882	-	1	NA	NA	NA	65571	NM_001159850	16526	Mm.33304	NM_010607	ENSMUSG00000037624	Kcnk2	A430027H14Rik|AI848635|TREK-1	potassium channel, subfamily K, member 2	protein-coding	0.045000	0.512438	
mm_90385.1	chr10	127289909	127290109	+	1	NA	NA	NA	-784	NM_007837	13198	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	0.030000	0.522388	
mm_56012.1	chr6	86516190	86516390	-	1	NA	NA	NA	9875	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.000000	0.527363	
mm_48889.1	chr5	151368357	151368557	-	1	NA	NA	NA	-218	NR_045700	625175	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0.095000	0.611940	
mm_148452.1	chr19	3988243	3988443	+	1	NA	NA	NA	1773	NM_001302482	71670	Mm.29735	NM_027857	ENSMUSG00000024866	Acy3	0610006H10Rik|AA3|AAIII|AW107362|Acy-3|HCBP1	aspartoacylase (aminoacylase) 3	protein-coding	0.025000	0.631841	37(CCTTTTCTGGCC,+,0.00)
mm_133167.1	chr16	70504314	70504514	+	1	NA	NA	NA	-112011	NR_040474	52645	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0.005000	0.358209	-31(CCATATATAGAC,+,0.00),27(GCATTTAAAGAT,+,0.00)
mm_24209.1	chr3	88621754	88621954	+	1	NA	NA	NA	460	NM_001198912	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.040000	0.611940	
mm_97867.1	chr11	83121641	83121841	+	1	NA	NA	NA	4896	NM_011407	20555	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0.015000	0.353234	
mm_15844.1	chr2	164769838	164770038	+	1	NA	NA	NA	9	NM_026785	68612	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	0.080000	0.626866	
mm_38217.1	chr4	135972458	135972658	-	1	NA	NA	NA	36	NM_011942	26394	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	0.090000	0.686567	
mm_137400.1	chr17	25861610	25861810	+	1	NA	NA	NA	-195	NM_001163766	106618	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	0.045000	0.606965	
mm_164656.1	chr17	36190141	36190341	-	1	NA	NA	NA	-90	NM_008208	15043	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0.005000	0.442786	
mm_155093.1	chrX	48166493	48166693	+	1	NA	NA	NA	20157	NM_028773	74131	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	0.025000	0.412935	
mm_70985.1	chr8	27260346	27260546	+	1	NA	NA	NA	119	NM_007918	13685	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0.110000	0.736318	
mm_64974.1	chr7	16815377	16815577	-	1	NA	NA	NA	-412	NM_133789	97387	Mm.21612	NM_133789	ENSMUSG00000030374	Strn4	C80611|ZIN|zinedin	striatin, calmodulin binding protein 4	protein-coding	0.000000	0.472637	
mm_165715.1	chr3	100489282	100489482	-	1	NA	NA	NA	-190	NM_001142952	74645	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.135000	0.741294	
mm_94267.1	chr11	3530818	3531018	+	1	NA	NA	NA	8374	NM_013870	29856	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.010000	0.626866	
mm_66596.1	chr7	45458093	45458293	-	1	NA	NA	NA	1693	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.040000	0.577114	
mm_114228.1	chr13	56522407	56522607	+	1	NA	NA	NA	-1	NM_178674	213311	Mm.233904	NM_178674	ENSMUSG00000035509	Fbxl21	D630045D17Rik|FBL3B|FBXL3B|Psttm	F-box and leucine-rich repeat protein 21	protein-coding	0.080000	0.686567	
mm_59372.1	chr7	25704690	25704890	+	1	NA	NA	NA	14263	NM_028771	52132	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.060000	0.621891	
mm_143369.1	chr17	67354844	67355044	-	1	NA	NA	NA	-485	NM_008984	19274	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.100000	0.701493	
mm_40509.1	chr5	57755243	57755443	+	1	NA	NA	NA	37262	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.000000	0.482587	
mm_9604.1	chr1	175625497	175625697	-	1	NA	NA	NA	38	NM_010209	14194	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	0.105000	0.631841	
mm_106880.1	chr12	8011552	8011752	+	1	NA	NA	NA	33975	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.020000	0.417910	
mm_159558.1	chr4	107823035	107823235	+	1	NA	NA	NA	20876	NM_001080926	16975	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0.010000	0.542289	
mm_23793.1	chr3	79591343	79591543	+	1	NA	NA	NA	54	NM_026352	67738	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	0.095000	0.616915	
mm_112385.1	chr12	119238055	119238255	-	1	NA	NA	NA	121	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.040000	0.547264	
mm_63932.1	chr7	139525629	139525829	+	1	NA	NA	NA	57068	NM_183248	14912	Mm.28308	NM_183248	ENSMUSG00000041309	Nkx6-2	Gtx|Nkx6.2	NK6 homeobox 2	protein-coding	0.010000	0.497512	
mm_99917.1	chr11	110180123	110180323	+	1	NA	NA	NA	-12070	NM_147220	217262	Mm.291459	NM_147220	ENSMUSG00000041797	Abca9	D630040K07Rik	ATP-binding cassette, sub-family A (ABC1), member 9	protein-coding	0.045000	0.527363	
mm_94798.1	chr11	22973168	22973368	+	1	NA	NA	NA	1263	NM_011663	22183	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.065000	0.631841	
mm_93886.1	chr10	125328390	125328590	-	1	NA	NA	NA	45	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.025000	0.482587	
mm_131097.1	chr16	4939021	4939221	+	1	NA	NA	NA	10	NM_025839	66911	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0.070000	0.611940	
mm_99195.1	chr11	101011657	101011857	+	1	NA	NA	NA	2305	NM_001243051	11975	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0.020000	0.477612	
mm_46682.1	chr5	109558886	109559086	-	1	NA	NA	NA	7	NM_016715	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.135000	0.706468	
mm_21970.1	chr2	167309201	167309401	-	1	NA	NA	NA	39877	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.010000	0.537313	
mm_72163.1	chr8	72219703	72219903	+	1	NA	NA	NA	73	NM_026455	67922	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	0.085000	0.656716	
mm_137936.1	chr17	32658951	32659151	+	1	NA	NA	NA	-432	NM_001101588	631304	Mm.328950	NM_001101588	ENSMUSG00000090700	Cyp4f40	EG631304	cytochrome P450, family 4, subfamily f, polypeptide 40	protein-coding	0.005000	0.532338	
mm_113215.1	chr13	25191784	25191984	+	1	NA	NA	NA	78112	NM_009513	22360	Mm.4766	NM_009513	ENSMUSG00000048978	Nrsn1	Neurensin-1|Neuro-p24|Vmp	neurensin 1	protein-coding	0.000000	0.388060	
mm_24395.1	chr3	90293108	90293308	+	1	NA	NA	NA	23059	NR_105979	102465612		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.110000	0.721393	
mm_134646.1	chr16	21787705	21787905	-	1	NA	NA	NA	29	NM_023737	74147	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0.040000	0.626866	-34(GCCCAGAAAAGG,-,0.00)
mm_52397.1	chr6	113307143	113307343	+	1	NA	NA	NA	106	NM_001282126	78783	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.115000	0.681592	
mm_65480.1	chr7	25615711	25615911	-	1	NA	NA	NA	81	NM_001039243	632778	Mm.423112	NM_001039243	ENSMUSG00000074261	Erich4	EG632778|Gm7092|Kseg1	glutamate rich 4	protein-coding	0.020000	0.626866	
mm_106630.1	chr11	120866558	120866758	-	1	NA	NA	NA	-42111	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.005000	0.522388	
mm_43902.1	chr5	144244345	144244545	+	1	NA	NA	NA	8	NM_001163709	55950	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.015000	0.567164	71(GACCATAAAGGG,-,0.00),73(CCATAAAGGGGC,+,0.00)
mm_26708.1	chr3	157947129	157947329	+	1	NA	NA	NA	-237	NM_001013806	433667	Mm.265806	NM_001013806	ENSMUSG00000039988	Ankrd13c	AI505652|AU022220	ankyrin repeat domain 13c	protein-coding	0.140000	0.721393	
mm_83689.1	chr9	50561165	50561365	-	1	NA	NA	NA	3	NM_025687	66654	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	0.115000	0.686567	
mm_96231.1	chr11	62551079	62551279	+	1	NA	NA	NA	8	NM_011664	22187	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.085000	0.537313	
mm_106136.1	chr11	116488234	116488434	-	1	NA	NA	NA	2012	NM_026364	67763	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	0.000000	0.482587	
mm_131988.1	chr16	25042219	25042419	+	1	NA	NA	NA	-17320	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.010000	0.442786	
mm_146295.1	chr18	80046835	80047035	+	1	NA	NA	NA	40	NM_053117	93737	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0.160000	0.815920	
mm_117877.1	chr13	98926282	98926482	-	1	NA	NA	NA	2	NM_178716	238799	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.140000	0.731343	
mm_120307.1	chr14	63141671	63141871	+	1	NA	NA	NA	19309	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.015000	0.527363	
mm_82573.1	chr9	21121556	21121756	-	1	NA	NA	NA	9619	NM_018793	54721	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.060000	0.616915	
mm_15434.1	chr2	157278912	157279112	+	1	NA	NA	NA	-86	NM_019642	20014	Mm.22130	NM_019642	ENSMUSG00000027642	Rpn2	1300012C06Rik|AV261018|Rpn-2	ribophorin II	protein-coding	0.095000	0.696517	
mm_152137.1	chr19	7039856	7040056	-	1	NA	NA	NA	70	NM_016737	20867	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	0.090000	0.651741	
mm_100517.1	chr11	120530620	120530820	+	1	NA	NA	NA	-7	NM_008101	14527	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.155000	0.766169	
mm_72262.1	chr8	75097066	75097266	+	1	NA	NA	NA	3548	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.035000	0.587065	
mm_25006.1	chr3	97658288	97658488	+	1	NA	NA	NA	176	NM_182997	108097	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.130000	0.701493	
mm_51330.1	chr6	72356115	72356315	+	1	NA	NA	NA	732	NM_144916	232086	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	0.015000	0.577114	
mm_71911.1	chr8	70083428	70083628	+	1	NA	NA	NA	-1	NM_177900	330790	Mm.152048	NM_177900	ENSMUSG00000007594	Hapln4	9330174O11|Bral2|Lpr4	hyaluronan and proteoglycan link protein 4	protein-coding	0.075000	0.621891	-100(ACCTTTAAAGCG,+,0.00),-99(CCTTTAAAGCGC,+,0.00)
mm_7185.1	chr1	92774846	92775046	-	1	NA	NA	NA	-56740	NM_016696	14733	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.050000	0.572139	
mm_154910.1	chrX	21360817	21361017	+	1	NA	NA	NA	52	NR_045668	331392	Mm.23126	NM_198633	ENSMUSG00000051537	Gm5124	EG331392	nucleolar and coiled-body phosphoprotein 1 pseudogene	pseudo	0.105000	0.611940	
mm_117581.1	chr13	89278257	89278457	-	1	NA	NA	NA	-262279	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.000000	0.298507	
mm_50998.1	chr6	63516126	63516326	+	1	NA	NA	NA	259369	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.015000	0.393035	
mm_118410.1	chr14	3545789	3545989	+	1	NA	NA	NA	41789	NR_038059	73549	Mm.398741	NR_038059	ENSMUSG00000079407	1700110I01Rik	100040740|1700016F01Rik|Gm2938	RIKEN cDNA 1700110I01 gene	ncRNA	0.000000	0.492537	
mm_22094.1	chr2	168955181	168955381	-	1	NA	NA	NA	306	NM_009564	22722	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	0.075000	0.636816	
mm_119283.1	chr14	34375450	34375650	+	1	NA	NA	NA	46	NM_153127	105450	Mm.272673	NM_153127	ENSMUSG00000041445	Mmrn2	AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1	multimerin 2	protein-coding	0.035000	0.562189	
mm_112444.1	chr13	5861415	5861615	+	1	NA	NA	NA	26	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.080000	0.676617	
mm_109196.1	chr12	108635691	108635891	+	1	NA	NA	NA	38	NM_001163396	14026	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.010000	0.452736	
mm_46901.1	chr5	114130616	114130816	-	1	NA	NA	NA	281	NM_001040691	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.135000	0.711443	
mm_167778.1	chr9	114117987	114118187	+	1	NA	NA	NA	60733	NM_001101510	382111	Mm.376140	NM_001101510	ENSMUSG00000086596	Susd5	Gm1126	sushi domain containing 5	protein-coding	0.020000	0.437811	
mm_79333.1	chr9	53341118	53341318	+	1	NA	NA	NA	39548	NM_176846	320051	Mm.277540	NM_176846	ENSMUSG00000034584	Exph5	AC079869.22gm5|B130009M24Rik|E030050P12|Kiaa0624|Slac2b|slac2-b	exophilin 5	protein-coding	0.040000	0.522388	-36(CCTCTTAAGGTG,+,0.00)
mm_117046.1	chr13	58359000	58359200	-	1	NA	NA	NA	-4238	NM_175214	75050	Mm.446094	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	0.110000	0.731343	
mm_69752.1	chr7	140956079	140956279	-	1	NA	NA	NA	-218	NM_030694	80876	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.000000	0.492537	
mm_106015.1	chr11	116012595	116012795	-	1	NA	NA	NA	24	NM_016905	14635	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0.125000	0.741294	
mm_111354.1	chr12	86990359	86990559	-	1	NA	NA	NA	-1783	NM_001080943	238331	Mm.185890	NM_001080943	ENSMUSG00000048483	Zdhhc22	Gm262	zinc finger, DHHC-type containing 22	protein-coding	0.090000	0.701493	
mm_7017.1	chr1	86526454	86526654	-	1	NA	NA	NA	-182	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.115000	0.641791	
mm_85360.1	chr9	103217315	103217515	-	1	NA	NA	NA	12871	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.025000	0.537313	
mm_57558.1	chr6	126939464	126939664	-	1	NA	NA	NA	23	NM_009013	19362	Mm.204634	NM_009013	ENSMUSG00000030346	Rad51ap1	2510006L10Rik|RAB22	RAD51 associated protein 1	protein-coding	0.095000	0.676617	
mm_31968.1	chr4	88094526	88094726	+	1	NA	NA	NA	-4	NM_001081184	230393	Mm.287210	NM_001081184	ENSMUSG00000038368	Focad	-	focadhesin	protein-coding	0.085000	0.681592	
mm_28604.1	chr3	94582631	94582831	-	1	NA	NA	NA	-15	NM_029721	76742	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.080000	0.651741	
mm_123586.1	chr14	67072298	67072498	-	1	NA	NA	NA	73	NM_028032	71978	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0.150000	0.731343	
mm_142405.1	chr17	45458894	45459094	-	1	NA	NA	NA	15944	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.025000	0.557214	84(AGTTTTATAAGG,-,0.00)
mm_57231.1	chr6	123282702	123282902	-	1	NA	NA	NA	7069	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.005000	0.368159	
mm_34106.1	chr4	139192829	139193029	+	1	NA	NA	NA	30	NM_001037761	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.100000	0.786070	
mm_103998.1	chr11	84870604	84870804	-	1	NA	NA	NA	34	NM_153144	217039	Mm.356653	NM_153144	ENSMUSG00000020530	Ggnbp2	AI451896|C75939|D330017P12Rik|DIF-3|Zfp403	gametogenetin binding protein 2	protein-coding	0.105000	0.706468	
mm_100609.1	chr11	121421329	121421529	+	1	NA	NA	NA	56	NM_181420	238024	Mm.117394	NM_181420	ENSMUSG00000039253	Fn3krp	FN3K-RP	fructosamine 3 kinase related protein	protein-coding	0.060000	0.646766	
mm_84538.1	chr9	67266805	67267005	-	1	NA	NA	NA	-30179	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	0.010000	0.552239	
mm_74870.1	chr8	25016710	25016910	-	1	NA	NA	NA	112	NM_001270996	11502	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	0.145000	0.761194	
mm_54454.1	chr6	34746321	34746521	-	1	NA	NA	NA	-34011	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.020000	0.597015	
mm_30014.1	chr3	135665060	135665260	-	1	NA	NA	NA	26387	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.000000	0.393035	
mm_142386.1	chr17	44814412	44814612	-	1	NA	NA	NA	115	NM_009820	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.025000	0.472637	-34(GCGTTTAAATGG,-,0.00)
mm_162006.1	chr19	40831425	40831625	+	1	NA	NA	NA	246	NM_172839	240665	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.155000	0.771144	
mm_45872.1	chr5	88008182	88008382	-	1	NA	NA	NA	5757	NM_011422	20599	Mm.261199	NM_011422	ENSMUSG00000029280	Smr3a	AA589601|MSG1|MSG3|Smr1|Smr3	submaxillary gland androgen regulated protein 3A	protein-coding	0.015000	0.512438	
mm_18868.1	chr2	75781913	75782113	-	1	NA	NA	NA	-50164	NM_172666	228061	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.010000	0.492537	
mm_76244.1	chr8	83588448	83588648	-	1	NA	NA	NA	5943	NM_027179	106529	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	0.025000	0.547264	
mm_61057.1	chr7	49910255	49910455	+	1	NA	NA	NA	56	NM_001146013	104245	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	0.030000	0.487562	
mm_73429.1	chr8	106135456	106135656	+	1	NA	NA	NA	156	NR_040346	69771	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.025000	0.557214	
mm_114588.1	chr13	75751715	75751915	+	1	NA	NA	NA	44331	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.005000	0.402985	
mm_53682.1	chr6	142345571	142345771	+	1	NA	NA	NA	-26	NM_183165	232491	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	0.075000	0.587065	
mm_77565.1	chr8	123428869	123429069	-	1	NA	NA	NA	-13987	NM_001253784	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.035000	0.482587	69(GCTTATAGACCC,+,0.00)
mm_99788.1	chr11	107428136	107428336	+	1	NA	NA	NA	42484	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.015000	0.477612	
mm_135429.1	chr16	45382662	45382862	-	1	NA	NA	NA	26291	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.005000	0.402985	
mm_79160.1	chr9	47813701	47813901	+	1	NA	NA	NA	4407	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.020000	0.457711	
mm_68202.1	chr7	104380626	104380826	-	1	NA	NA	NA	-22080	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.000000	0.402985	
mm_169482.1	chr14	73525126	73525326	-	1	NA	NA	NA	15177	NM_026119	67381	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0.090000	0.621891	
mm_149732.1	chr19	21857978	21858178	+	1	NA	NA	NA	79738	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.005000	0.303483	
mm_78712.1	chr9	41446603	41446803	+	1	NA	NA	NA	-28190	NR_131931	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.015000	0.517413	
mm_121250.1	chr14	103057404	103057604	+	1	NA	NA	NA	10492	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.025000	0.552239	
mm_71559.1	chr8	49485366	49485566	+	1	NA	NA	NA	-810776	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.010000	0.497512	-17(GGGTATTTAAGC,-,0.00)
mm_22166.1	chr2	173033450	173033650	-	1	NA	NA	NA	11648	NM_019547	56190	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.025000	0.626866	
mm_156129.1	chrX	120160538	120160738	+	1	NA	NA	NA	-129689	NM_001271809	245578	Mm.39691	NM_001081385	ENSMUSG00000034755	Pcdh11x	PCDHX|PCDHX11|Pcdh11	protocadherin 11 X-linked	protein-coding	0.015000	0.378109	
mm_62784.1	chr7	112452848	112453048	+	1	NA	NA	NA	25242	NM_020606	57342	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding	0.005000	0.313433	
mm_141266.1	chr17	27623726	27623926	-	1	NA	NA	NA	-374	NM_019837	56409	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0.060000	0.606965	
mm_163236.1	chr11	104160507	104160707	+	1	NA	NA	NA	-25720	NM_001082535	237958	Mm.117063	NM_199019	ENSMUSG00000049506	Sppl2c	4933407P14Rik|IMP5	signal peptide peptidase 2C	protein-coding	0.000000	0.567164	
mm_165947.1	chr4	82882549	82882749	-	1	NA	NA	NA	2502	NM_009887	12622	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	0.020000	0.492537	
mm_157324.1	chrX	23285350	23285550	-	1	NA	NA	NA	109	NM_001290476	67455	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	0.025000	0.437811	
mm_154866.1	chrX	20672893	20673093	+	1	NA	NA	NA	10097	NM_001136085	22201	Mm.1104	NM_009457	ENSMUSG00000001924	Uba1	A1S9|Sbx|Ube-1|Ube1x	ubiquitin-like modifier activating enzyme 1	protein-coding	0.025000	0.437811	
mm_126355.1	chr15	79933878	79934078	+	1	NA	NA	NA	-1332	NM_144811	52609	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	0.030000	0.532338	
mm_95032.1	chr11	32057673	32057873	+	1	NA	NA	NA	43455	NR_130637	104692	Mm.414035	NR_130637	ENSMUSG00000086386	Gm12108	BB052462|OTTMUSG00000005365	predicted gene 12108	ncRNA	0.025000	0.517413	
mm_90242.1	chr10	121474141	121474341	+	1	NA	NA	NA	2009	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.015000	0.422886	
mm_5169.1	chr1	10214152	10214352	-	1	NA	NA	NA	18418	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.010000	0.343284	
mm_163200.1	chr11	96299159	96299359	+	1	NA	NA	NA	88	NM_008269	15414	Mm.215	NM_008269	ENSMUSG00000000690	Hoxb6	Hox-2.2	homeobox B6	protein-coding	0.090000	0.666667	
mm_92739.1	chr10	80939606	80939806	-	1	NA	NA	NA	9615	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.030000	0.552239	
mm_137229.1	chr17	24351923	24352123	+	1	NA	NA	NA	0	NM_013855	27410	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	0.100000	0.726368	
mm_100652.1	chr11	3151343	3151543	-	1	NA	NA	NA	27422	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.005000	0.467662	
mm_104710.1	chr11	98042957	98043157	-	1	NA	NA	NA	10405	NM_146028	217154	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0.005000	0.467662	
mm_8393.1	chr1	151428263	151428463	-	1	NA	NA	NA	72	NM_025819	66875	Mm.290905	NM_025819	ENSMUSG00000052748	Swt1	1200016B10Rik|C1orf26	SWT1 RNA endoribonuclease homolog (S. cerevisiae)	protein-coding	0.085000	0.621891	
mm_163809.1	chr14	19416062	19416262	+	1	NA	NA	NA	186425	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.343284	
mm_112132.1	chr12	112959418	112959618	-	1	NA	NA	NA	-16964	NM_001145900	399566	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	0.015000	0.557214	
mm_150165.1	chr19	32485630	32485830	+	1	NA	NA	NA	-39	NM_010799	17330	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0.110000	0.641791	
mm_89288.1	chr10	87892376	87892576	+	1	NA	NA	NA	31365	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.000000	0.457711	
mm_122116.1	chr14	31001460	31001660	-	1	NA	NA	NA	106	NM_026911	69019	Mm.28852	NM_026911	ENSMUSG00000021917	Spcs1	1810004F21Rik	signal peptidase complex subunit 1 homolog (S. cerevisiae)	protein-coding	0.120000	0.711443	
mm_27221.1	chr3	36000572	36000772	-	1	NA	NA	NA	6	NM_023644	72039	Mm.249016	NM_023644	ENSMUSG00000027709	Mccc1	1810045E08Rik|2310058B18Rik|MCCalpha|Mcca|R75106	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	protein-coding	0.045000	0.567164	
mm_120532.1	chr14	67189152	67189352	+	1	NA	NA	NA	-44040	NM_010095	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.015000	0.412935	
mm_54100.1	chr6	16852261	16852461	-	1	NA	NA	NA	46080	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.000000	0.298507	
mm_44825.1	chr5	33782629	33782829	-	1	NA	NA	NA	-25	NM_019694	56384	Mm.260538	NM_019694	ENSMUSG00000005299	Letm1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding	0.110000	0.726368	
mm_114940.1	chr13	96388294	96388494	+	1	NA	NA	NA	100	NM_026173	67463	Mm.86472	NM_026173	ENSMUSG00000021671	Poc5	1200014M14Rik|AV144706	POC5 centriolar protein	protein-coding	0.085000	0.641791	
mm_44733.1	chr5	31108131	31108331	-	1	NA	NA	NA	13	NM_001347323	22784	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.060000	0.606965	
mm_112092.1	chr12	112721601	112721801	-	1	NA	NA	NA	-473	NM_001024602	217882	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0.050000	0.636816	
mm_16559.1	chr2	181864353	181864553	+	1	NA	NA	NA	93	NM_025901	67005	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	0.070000	0.606965	
mm_61818.1	chr7	87584024	87584224	+	1	NA	NA	NA	-44	NM_001081414	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0.010000	0.522388	
mm_120826.1	chr14	75151390	75151590	+	1	NA	NA	NA	15065	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.010000	0.482587	
mm_126764.1	chr15	85859887	85860087	+	1	NA	NA	NA	41	NM_013882	29870	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding	0.065000	0.606965	
mm_76786.1	chr8	101783767	101783967	-	1	NA	NA	NA	1001244	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.000000	0.562189	-18(CACTATAAAAGG,-,0.00)
mm_118127.1	chr13	104431304	104431504	-	1	NA	NA	NA	143569	NM_001081020	108154	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.030000	0.412935	
mm_102992.1	chr11	69686672	69686872	-	1	NA	NA	NA	-1218	NM_023517	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.010000	0.552239	
mm_97791.1	chr11	82870322	82870522	+	1	NA	NA	NA	322	NM_001164570	67338	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.025000	0.517413	-84(AGCTTTAAAAAA,-,0.00)
mm_86466.1	chr10	4432524	4432724	+	1	NA	NA	NA	19	NM_024261	73419	Mm.346733	NM_024261	ENSMUSG00000061759	Armt1	1700052N19Rik|AW320013|AW536799	acidic residue methyltransferase 1	protein-coding	0.080000	0.522388	
mm_65081.1	chr7	19169571	19169771	-	1	NA	NA	NA	-3544	NM_001080815	381853	Mm.333633	NM_001080815	ENSMUSG00000030406	Gipr	GIP-R|Gm1081|Gm160	gastric inhibitory polypeptide receptor	protein-coding	0.015000	0.502488	
mm_115852.1	chr13	21288679	21288879	-	1	NA	NA	NA	3907	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.010000	0.452736	
mm_122896.1	chr14	54950026	54950226	-	1	NA	NA	NA	-984	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.040000	0.587065	
mm_134248.1	chr16	13541149	13541349	-	1	NA	NA	NA	-20830	NR_037997	70100	Mm.158330	NR_037997	ENSMUSG00000099411	2310015D24Rik	-	RIKEN cDNA 2310015D24 gene	ncRNA	0.025000	0.597015	
mm_80861.1	chr9	98490429	98490629	+	1	NA	NA	NA	-8	NM_009034	19660	Mm.12825	NM_009034	ENSMUSG00000032454	Rbp2	Crbp-2|CrbpII|Rbp-2	retinol binding protein 2, cellular	protein-coding	0.015000	0.457711	-31(CTTTATATACCT,+,0.00),-10(AGCTATAAAAGC,-,0.00)
mm_145696.1	chr18	62324142	62324342	+	1	NA	NA	NA	38	NM_008313	15562	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	0.090000	0.701493	
mm_471.1	chr1	36384393	36384593	+	1	NA	NA	NA	12202	NM_001277076	100534273	Mm.389112	NM_001277076	ENSMUSG00000037432	Fer1l5	4930533C12Rik	fer-1-like 5 (C. elegans)	protein-coding	0.010000	0.383085	
mm_41106.1	chr5	87775674	87775874	+	1	NA	NA	NA	1324	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.005000	0.343284	-9(GTTTTTATAGGA,+,0.00)
mm_155933.1	chrX	103493520	103493720	+	1	NA	NA	NA	62	NR_015508	70252	Mm.380486	NR_015508	ENSMUSG00000097571	Jpx	2010000I03Rik|2510040I06Rik|Enox	Jpx transcript, Xist activator (non-protein coding)	ncRNA	0.060000	0.592040	
mm_40677.1	chr5	65537161	65537361	+	1	NA	NA	NA	16	NM_001310619	53323	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.155000	0.746269	
mm_34927.1	chr4	155831225	155831425	+	1	NA	NA	NA	56	NM_025338	66077	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	0.055000	0.527363	
mm_129439.1	chr15	78529465	78529665	-	1	NA	NA	NA	86	NM_001204153	72709	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	0.030000	0.626866	
mm_93380.1	chr10	105574106	105574306	-	1	NA	NA	NA	273	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.085000	0.656716	
mm_148842.1	chr19	6372490	6372690	+	1	NA	NA	NA	8900	NR_122118	22668	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.010000	0.472637	
mm_122192.1	chr14	31742733	31742933	-	1	NA	NA	NA	87582	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.000000	0.412935	57(GACCTTATAGGG,-,0.00),59(CCTTATAGGGTA,+,0.00)
mm_36447.1	chr4	82492734	82492934	-	1	NA	NA	NA	12945	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.010000	0.467662	
mm_97682.1	chr11	79999143	79999343	+	1	NA	NA	NA	6137	NM_199196	52615	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	suppressor of zeste 12 homolog (Drosophila)	protein-coding	0.000000	0.368159	
mm_43095.1	chr5	124459794	124459994	+	1	NA	NA	NA	13190	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.015000	0.492537	
mm_151110.1	chr19	47864248	47864448	+	1	NA	NA	NA	-1197	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.025000	0.557214	
mm_93229.1	chr10	95322882	95323082	-	1	NA	NA	NA	727	NM_001330138	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.015000	0.457711	
mm_171989.1	chr5	95974735	95974935	+	1	NA	NA	NA	17896	NM_018866	55985	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.025000	0.502488	
mm_81233.1	chr9	107888074	107888274	+	1	NA	NA	NA	45	NM_028369	72825	Mm.38037	NM_028369	ENSMUSG00000032583	Mon1a	2810468K17Rik	MON1 homolog A, secretory traffciking associated	protein-coding	0.070000	0.641791	
mm_94945.1	chr11	29718688	29718888	+	1	NA	NA	NA	225	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.025000	0.462687	
mm_12528.1	chr2	72180125	72180325	+	1	NA	NA	NA	-105412	NM_023057	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.010000	0.507463	
mm_141702.1	chr17	33998886	33999086	-	1	NA	NA	NA	1347	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.015000	0.582090	
mm_3338.1	chr1	137966431	137966631	+	1	NA	NA	NA	76	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.040000	0.482587	
mm_58858.1	chr7	16893724	16893924	+	1	NA	NA	NA	2038	NM_010320	14709	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	0.020000	0.636816	
mm_139426.1	chr17	53492790	53492990	+	1	NA	NA	NA	13656	NM_025887	271457	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0.000000	0.313433	61(AGCTATTAATGG,-,0.00),63(CTATTAATGGGC,+,0.00)
mm_125799.1	chr15	74876546	74876746	+	1	NA	NA	NA	5058	NM_025929	67038	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.025000	0.482587	
mm_53560.1	chr6	137102389	137102589	+	1	NA	NA	NA	67229	NM_001164214	232441	Mm.46233	NM_181988	ENSMUSG00000030222	Rerg	-	RAS-like, estrogen-regulated, growth-inhibitor	protein-coding	0.020000	0.492537	
mm_111687.1	chr12	103457090	103457290	-	1	NA	NA	NA	33	NM_145449	217845	Mm.298416	NM_145449	ENSMUSG00000021208	Ifi27l2b	1810023F06Rik|ISG12(b2)	interferon, alpha-inducible protein 27 like 2B	protein-coding	0.005000	0.477612	
mm_55011.1	chr6	48840444	48840644	-	1	NA	NA	NA	444	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.005000	0.572139	
mm_54795.1	chr6	41680691	41680891	-	1	NA	NA	NA	-68	NM_001007572	194352	Mm.135734	NM_001007572	ENSMUSG00000036899	Trpv5	CAT2|D630033B11|ECAC1	transient receptor potential cation channel, subfamily V, member 5	protein-coding	0.005000	0.492537	
mm_26128.1	chr3	137867861	137868061	+	1	NA	NA	NA	286	NM_001033155	70604	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	0.155000	0.746269	
mm_124954.1	chr15	12833512	12833712	+	1	NA	NA	NA	8797	NM_001130149	14000	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	0.115000	0.587065	
mm_38304.1	chr4	136898145	136898345	-	1	NA	NA	NA	599	NM_007572	12259	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	0.015000	0.532338	
mm_128836.1	chr15	68341113	68341313	-	1	NA	NA	NA	76	NR_029718	387228		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0.010000	0.472637	
mm_58371.1	chr6	148945336	148945536	-	1	NA	NA	NA	579	NR_144294	109163	Mm.440359	NM_175404		3010003L21Rik	-	RIKEN cDNA 3010003L21 gene	ncRNA	0.100000	0.601990	
mm_27492.1	chr3	54807722	54807922	-	1	NA	NA	NA	-31	NM_133231	170767	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	0.135000	0.686567	
mm_139260.1	chr17	47759143	47759343	+	1	NA	NA	NA	21312	NM_001161723	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.010000	0.502488	
mm_125519.1	chr15	57694744	57694944	+	1	NA	NA	NA	177	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.045000	0.527363	
mm_48795.1	chr5	148928539	148928739	-	1	NA	NA	NA	8	NM_153572	231912	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	0.075000	0.606965	
mm_98456.1	chr11	94947027	94947227	+	1	NA	NA	NA	10903	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.010000	0.572139	
mm_101729.1	chr11	42320951	42321151	-	1	NA	NA	NA	21	NM_008068	14399	Mm.4915	NM_008068	ENSMUSG00000020428	Gabra6	GABA-ARalpha6|Gabra-6|alpha6	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6	protein-coding	0.015000	0.422886	
mm_136240.1	chr16	90934582	90934782	-	1	NA	NA	NA	167	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.100000	0.696517	
mm_79482.1	chr9	56994859	56995059	+	1	NA	NA	NA	-9	NM_019651	56294	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	0.100000	0.711443	
mm_117993.1	chr13	100452755	100452955	-	1	NA	NA	NA	9	NM_008670	17940	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.020000	0.412935	
mm_105379.1	chr11	103267299	103267499	-	1	NA	NA	NA	2	NM_016896	53859	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.105000	0.701493	
mm_41382.1	chr5	90739108	90739308	+	1	NA	NA	NA	-20090	NM_009141	20311	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0.010000	0.417910	
mm_45219.1	chr5	53213223	53213423	-	1	NA	NA	NA	129	NM_172710	231238	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0.145000	0.805970	
mm_101110.1	chr11	11933378	11933578	-	1	NA	NA	NA	-35334	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.030000	0.547264	
mm_90874.1	chr10	9027215	9027415	-	1	NA	NA	NA	-141245	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.035000	0.472637	
mm_12420.1	chr2	70562038	70562238	+	1	NA	NA	NA	9	NM_008077	14415	Mm.272120	NM_008077	ENSMUSG00000070880	Gad1	EP10|Gad-1	glutamate decarboxylase 1	protein-coding	0.100000	0.736318	
mm_103205.1	chr11	70652745	70652945	-	1	NA	NA	NA	1805	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.025000	0.487562	
mm_90826.1	chr10	7955820	7956020	-	1	NA	NA	NA	203	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.140000	0.800995	
mm_21372.1	chr2	157279437	157279637	-	1	NA	NA	NA	12	NM_001039557	629499	Mm.384235	NM_001039557	ENSMUSG00000074627	Mroh8	4922505G16Rik	maestro heat-like repeat family member 8	protein-coding	0.120000	0.751244	
mm_85516.1	chr9	106438084	106438284	-	1	NA	NA	NA	52	NM_025371	109652	Mm.7165	NM_025371	ENSMUSG00000023262	Acy1	1110014J22Rik|Acy-1	aminoacylase 1	protein-coding	0.060000	0.631841	
mm_27977.1	chr3	80802715	80802915	-	1	NA	NA	NA	-24	NM_001039195	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.105000	0.686567	
mm_16790.1	chr2	10064340	10064540	-	1	NA	NA	NA	-15831	NM_027748	209361	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0.010000	0.383085	
mm_77914.1	chr9	7349990	7350190	+	1	NA	NA	NA	2716	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.353234	
mm_16547.1	chr2	181714994	181715194	+	1	NA	NA	NA	78	NM_001318923	18389	Mm.285075	NM_011012	ENSMUSG00000027584	Oprl1	KOR-3|KOR3|LC132|MOR-C|NOP|ORGC|ORL1|Oprl|XOR1|morc	opioid receptor-like 1	protein-coding	0.025000	0.562189	
mm_158195.1	chrX	104857113	104857313	-	1	NA	NA	NA	54	NM_053206	272790	Mm.165776	NM_053206	ENSMUSG00000031224	Magee2	9630059J11Rik|BB131182|Mage-e2	melanoma antigen, family E, 2	protein-coding	0.050000	0.572139	
mm_39212.1	chr4	156059332	156059532	-	1	NA	NA	NA	370	NR_132444	100415901	Mm.437006	NR_132444	ENSMUSG00000086549	Gm13648	OTTMUSG00000013217	predicted gene 13648	ncRNA	0.015000	0.626866	
mm_27367.1	chr3	50437949	50438149	-	1	NA	NA	NA	5564	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.412935	
mm_37975.1	chr4	133598677	133598877	-	1	NA	NA	NA	3391	NM_018754	55948	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	0.010000	0.527363	
mm_160287.1	chr7	126429310	126429510	+	1	NA	NA	NA	643	NM_030566	70314	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	0.040000	0.641791	
mm_75174.1	chr8	36816074	36816274	-	1	NA	NA	NA	-83120	NM_001194941	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.005000	0.407960	-35(TACTATATAAAG,-,0.00)
mm_22100.1	chr2	169233131	169233331	-	1	NA	NA	NA	254962	NR_040326	75508	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.000000	0.487562	-34(CCCTATATAAGC,+,0.00),-34(CCCTATATAAGC,-,0.00)
mm_19047.1	chr2	77170519	77170719	-	1	NA	NA	NA	16	NM_001025576	545428	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI|ENSMUSG00000075261	coiled-coil domain containing 141	protein-coding	0.040000	0.557214	
mm_119583.1	chr14	50924922	50925122	+	1	NA	NA	NA	73	NM_009687	11792	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	0.095000	0.641791	
mm_137024.1	chr17	17871868	17872068	+	1	NA	NA	NA	11971	NM_013521	14293	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0.005000	0.412935	83(GAGTCTAAAGGG,-,0.00)
mm_26723.1	chr3	159839604	159839804	+	1	NA	NA	NA	9	NM_026582	68151	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|Gpr177	wntless homolog (Drosophila)	protein-coding	0.080000	0.676617	
mm_109224.1	chr12	108793172	108793372	+	1	NA	NA	NA	-39	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.150000	0.825871	
mm_81242.1	chr9	107950872	107951072	+	1	NA	NA	NA	9	NM_011634	22036	Mm.297870	NM_011634	ENSMUSG00000032586	Traip	Trip	TRAF-interacting protein	protein-coding	0.075000	0.601990	
mm_53933.1	chr6	4746999	4747199	-	1	NA	NA	NA	105	NM_001130188	20392	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	0.040000	0.601990	
mm_4659.1	chr1	180363906	180364106	+	1	NA	NA	NA	-33457	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.030000	0.477612	
mm_16198.1	chr2	173005996	173006196	+	1	NA	NA	NA	5979	NM_175112	66679	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	0.005000	0.412935	
mm_126702.1	chr15	85132041	85132241	+	1	NA	NA	NA	42	NM_026357	67747	Mm.158173	NM_026357	ENSMUSG00000022431	Ribc2	4930579A10Rik|Trib	RIB43A domain with coiled-coils 2	protein-coding	0.085000	0.577114	
mm_55527.1	chr6	70726396	70726596	-	1	NA	NA	NA	65679	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.482587	
mm_149217.1	chr19	9991490	9991690	+	1	NA	NA	NA	8944	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.010000	0.497512	
mm_92109.1	chr10	63023816	63024016	-	1	NA	NA	NA	-67	NM_001079824	432467	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	0.095000	0.731343	
mm_162493.1	chr1	136220288	136220488	-	1	NA	NA	NA	-7560	NM_001329610	76422	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	0.025000	0.587065	
mm_89123.1	chr10	84838968	84839168	+	1	NA	NA	NA	920	NM_027689	71137	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.005000	0.343284	
mm_38624.1	chr4	142048909	142049109	-	1	NA	NA	NA	31111	NR_131014	78917	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.020000	0.487562	
mm_127684.1	chr15	102966663	102966863	+	1	NA	NA	NA	-33	NM_010462	209448	Mm.31665	NM_010462	ENSMUSG00000022484	Hoxc10	AI506621|Hox-3.6	homeobox C10	protein-coding	0.040000	0.522388	69(CTCCTTAAAAAC,-,0.00),71(CCTTAAAAACCC,+,0.00)
mm_145332.1	chr18	56387375	56387575	+	1	NA	NA	NA	-44657	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.010000	0.547264	
mm_22638.1	chr3	14863380	14863580	+	1	NA	NA	NA	-58	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.035000	0.547264	-2(CTATATAAAAGA,-,0.00)
mm_8754.1	chr1	160309001	160309201	-	1	NA	NA	NA	-13129	NR_035448	100316784		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	0.020000	0.482587	
mm_29740.1	chr3	126922807	126923007	-	1	NA	NA	NA	20479	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.015000	0.407960	
mm_9938.1	chr1	190169416	190169616	-	1	NA	NA	NA	1164	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding	0.090000	0.686567	
mm_126241.1	chr15	79002188	79002388	+	1	NA	NA	NA	65	NR_105921	102465577		NR_105921	ENSMUSG00000099180	Mir6956	Gm27880|mmu-mir-6956	microRNA 6956	ncRNA	0.055000	0.656716	
mm_41104.1	chr5	87774832	87775032	+	1	NA	NA	NA	482	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.000000	0.343284	
mm_81525.1	chr9	110062514	110062714	+	1	NA	NA	NA	10593	NM_001311164	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.020000	0.492537	
mm_67635.1	chr7	84372570	84372770	-	1	NA	NA	NA	37368	NM_007488	11864	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding	0.025000	0.427861	-42(TCCTTTATAGTC,+,0.00)
mm_137390.1	chr17	25817829	25818029	+	1	NA	NA	NA	-5698	NM_173741	268933	Mm.95512	NM_173741	ENSMUSG00000025737	Wdr24	BC037651	WD repeat domain 24	protein-coding	0.025000	0.592040	
mm_85570.1	chr9	107280569	107280769	-	1	NA	NA	NA	8727	NM_001316691	102626	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0.030000	0.532338	
mm_172058.1	chr6	130639127	130639327	+	1	NA	NA	NA	-252353	NM_016659	16627	Mm.24399	NM_016659	ENSMUSG00000079853	Klra1	A1|CH29-493D4.3|Klra22|Ly49a|Ly49o<129>|Ly49v	killer cell lectin-like receptor, subfamily A, member 1	protein-coding	0.010000	0.388060	
mm_26904.1	chr3	19311239	19311439	-	1	NA	NA	NA	-17	NM_001122759	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.165000	0.766169	
mm_82544.1	chr9	20888041	20888241	-	1	NA	NA	NA	-34	NM_145610	235036	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog (Drosophila)	protein-coding	0.080000	0.572139	55(GTCTTTATAAAG,-,0.00),57(CTTTATAAAGAT,+,0.00)
mm_28489.1	chr3	92484111	92484311	-	1	NA	NA	NA	1670	NM_009264	20753	Mm.331191	NM_009264	ENSMUSG00000050359	Sprr1a	AI528815|SPR1a|mSPRR1A	small proline-rich protein 1A	protein-coding	0.000000	0.482587	
mm_6686.1	chr1	80665113	80665313	-	1	NA	NA	NA	139	NM_001285927	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.015000	0.457711	4(CCATTTCAAGGC,+,0.00)
mm_165757.1	chr3	113155525	113155725	-	1	NA	NA	NA	1102	NM_001190404	545562	Mm.462977	NM_001190403		Amy2b	Amy-X|Amy2-2|OTTMUSG00000022462|mAmy2-1	amylase 2b	protein-coding	0.005000	0.298507	11(CCCTATAAAATG,-,0.00)
mm_12652.1	chr2	74825730	74825930	+	1	NA	NA	NA	18	NM_016804	53375	Mm.292613	NM_016804	ENSMUSG00000027099	Mtx2	1500012G02Rik	metaxin 2	protein-coding	0.125000	0.701493	
mm_155361.1	chrX	71049995	71050195	+	1	NA	NA	NA	-161	NM_001256048	333639	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	0.100000	0.641791	
mm_153718.1	chr19	44403489	44403689	-	1	NA	NA	NA	4120	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.507463	
mm_109124.1	chr12	105733986	105734186	+	1	NA	NA	NA	28104	NM_030187	78801	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	0.010000	0.522388	
mm_49712.1	chr6	34422937	34423137	+	1	NA	NA	NA	10675	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.015000	0.398010	
mm_30614.1	chr4	7669857	7670057	+	1	NA	NA	NA	109269	NR_040645	71510	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0.005000	0.298507	
mm_152735.1	chr19	18936600	18936800	-	1	NA	NA	NA	64417	NM_146095	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.005000	0.278607	
mm_69111.1	chr7	127024813	127025013	-	1	NA	NA	NA	1566	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.015000	0.517413	
mm_106994.1	chr12	11266084	11266284	+	1	NA	NA	NA	298	NM_025695	67241	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	0.130000	0.751244	
mm_135335.1	chr16	42248966	42249166	-	1	NA	NA	NA	54403	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0.025000	0.512438	
mm_108550.1	chr12	84409071	84409271	+	1	NA	NA	NA	103	NM_028377	72873	Mm.440428	NM_028377	ENSMUSG00000057265	Bbof1	2900006K08Rik|AI427784|Ccdc176	basal body orientation factor 1	protein-coding	0.070000	0.567164	
mm_9138.1	chr1	170867651	170867851	-	1	NA	NA	NA	20	NM_001081304	226641	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.080000	0.592040	
mm_108961.1	chr12	102391250	102391450	+	1	NA	NA	NA	48463	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.010000	0.402985	-53(GCCCATTAATGC,-,0.00),-51(CCATTAATGCCC,+,0.00)
mm_134937.1	chr16	31151821	31152021	-	1	NA	NA	NA	49317	NM_030138	78618	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.005000	0.457711	
mm_78721.1	chr9	41579851	41580051	+	1	NA	NA	NA	-1302	NR_015483	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.015000	0.442786	
mm_75291.1	chr8	41041823	41042023	-	1	NA	NA	NA	8	NM_001005865	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.035000	0.527363	
mm_60786.1	chr7	45566816	45567016	+	1	NA	NA	NA	-3237	NM_009737	12036	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.000000	0.482587	
mm_36117.1	chr4	58911829	58912029	-	1	NA	NA	NA	796	NM_172381	230249	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|mKIAA0368	expressed sequence AI314180	protein-coding	0.175000	0.800995	
mm_82953.1	chr9	35569946	35570146	-	1	NA	NA	NA	23	NM_029762	76832	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	hydrolethalus syndrome 1	protein-coding	0.105000	0.646766	
mm_34133.1	chr4	139290909	139291109	+	1	NA	NA	NA	19691	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.035000	0.577114	
mm_12810.1	chr2	80302250	80302450	+	1	NA	NA	NA	9880	NM_177256	320769	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	0.000000	0.388060	
mm_146844.1	chr18	23805675	23805875	-	1	NA	NA	NA	1805	NM_153058	212307	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.020000	0.477612	
mm_29651.1	chr3	122372733	122372933	-	1	NA	NA	NA	-46947	NM_013867	29815	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0.000000	0.407960	
mm_169240.1	chr13	73347267	73347467	-	1	NA	NA	NA	17	NR_045293	432777	Mm.415319	NR_045293		D630045M09Rik	AU019512	RIKEN cDNA D630045M09 gene	ncRNA	0.010000	0.467662	
mm_45664.1	chr5	77205201	77205401	-	1	NA	NA	NA	5904	NM_001289767	69982	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0.025000	0.482587	72(CGGTTTATAAAC,-,0.00)
mm_99009.1	chr11	98836703	98836903	+	1	NA	NA	NA	18	NM_001080925	268480	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0.115000	0.771144	
mm_163719.1	chr13	112733587	112733787	+	1	NA	NA	NA	-67090	NM_008903	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.015000	0.353234	
mm_71544.1	chr8	47788745	47788945	+	1	NA	NA	NA	-33298	NM_001111318	100039801	Mm.471595	NM_001111318	ENSMUSG00000061974	Cldn24	ENSMUSG00000061974|Gm10107	claudin 24	protein-coding	0.005000	0.532338	
mm_64359.1	chr7	142390212	142390412	+	1	NA	NA	NA	-2442	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.000000	0.512438	
mm_161219.1	chr13	67399675	67399875	-	1	NA	NA	NA	-8	NM_001080941	72807	Mm.303790	NM_001080941	ENSMUSG00000078994	Zfp429	2810487A22Rik|AI929863|Rsl2	zinc finger protein 429	protein-coding	0.030000	0.527363	
mm_77228.1	chr8	115703734	115703934	-	1	NA	NA	NA	3060	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.000000	0.328358	
mm_43125.1	chr5	125158341	125158541	+	1	NA	NA	NA	20773	NM_001253905	20602	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.030000	0.597015	-33(TCCTATATAAAC,-,0.00)
mm_101279.1	chr11	21568999	21569199	-	1	NA	NA	NA	2835	NM_008618	17449	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	0.010000	0.373134	
mm_40259.1	chr5	38230570	38230770	+	1	NA	NA	NA	10188	NM_025281	17089	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	0.025000	0.487562	
mm_58936.1	chr7	18065903	18066103	+	1	NA	NA	NA	74	NM_001162523	67315	Mm.46089	NM_026087	ENSMUSG00000030366	Ceacam12	1600031J20Rik|Ceacam12-C1|Ceacam12-C3|Ceacam12C1|Ceacam12C3	carcinoembryonic antigen-related cell adhesion molecule 12	protein-coding	0.005000	0.467662	
mm_43209.1	chr5	129234084	129234284	+	1	NA	NA	NA	137434	NM_001347486	243277	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding	0.015000	0.597015	-34(ACCTATATAAAG,-,0.00),-32(CTATATAAAGCC,+,0.00)
mm_16289.1	chr2	174111022	174111222	+	1	NA	NA	NA	771	NM_213733	228961	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	0.045000	0.601990	
mm_18614.1	chr2	68415761	68415961	-	1	NA	NA	NA	56120	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.015000	0.487562	
mm_131076.1	chr16	4726264	4726464	+	1	NA	NA	NA	3	NM_001136066	15369	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.105000	0.686567	
mm_105862.1	chr11	113803567	113803767	-	1	NA	NA	NA	-51852	NM_001163346	56699	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.020000	0.567164	
mm_34893.1	chr4	155624791	155624991	+	1	NA	NA	NA	22	NM_007661	12537	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	0.150000	0.661692	
mm_26212.1	chr3	138745783	138745983	+	1	NA	NA	NA	3675	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.010000	0.452736	
mm_94382.1	chr11	5498583	5498783	+	1	NA	NA	NA	-21958	NM_013842	22433	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0.015000	0.467662	
mm_29094.1	chr3	104777388	104777588	-	1	NA	NA	NA	59	NM_183224	329731	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	0.075000	0.661692	
mm_17445.1	chr2	28533014	28533214	-	1	NA	NA	NA	-350	NM_001145835	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.005000	0.512438	
mm_12973.1	chr2	90768324	90768524	+	1	NA	NA	NA	-14320	NM_178755	271813	Mm.61146	NM_178755	ENSMUSG00000040812	Agbl2	4930524K04|A430081C19Rik|CCP2	ATP/GTP binding protein-like 2	protein-coding	0.005000	0.447761	
mm_39560.1	chr5	22990976	22991176	+	1	NA	NA	NA	-244192	NR_027362	330052	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	0.005000	0.437811	
mm_13887.1	chr2	120027485	120027685	+	1	NA	NA	NA	102	NM_001114637	433466	Mm.482417	NM_001114637	ENSMUSG00000098789	Jmjd7	-	jumonji domain containing 7	protein-coding	0.105000	0.686567	
mm_121790.1	chr14	19977152	19977352	-	1	NA	NA	NA	-3	NM_001285909	14702	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.020000	0.537313	
mm_84601.1	chr9	70040598	70040798	-	1	NA	NA	NA	-2610	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.050000	0.497512	
mm_10301.1	chr2	10594765	10594965	+	1	NA	NA	NA	77261	NR_035417	100316668		NR_035417	ENSMUSG00000080657	Mir669i	Mirn669i|mir-669i|mmu-mir-669i	microRNA 669i	ncRNA	0.000000	0.338308	
mm_52520.1	chr6	115441429	115441629	+	1	NA	NA	NA	19463	NM_011146	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.010000	0.447761	
mm_12894.1	chr2	84798701	84798901	+	1	NA	NA	NA	-27	NM_019949	56791	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.045000	0.616915	
mm_50769.1	chr6	53620448	53620648	+	1	NA	NA	NA	47174	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.005000	0.363184	
mm_59256.1	chr7	24869954	24870154	+	1	NA	NA	NA	-3	NM_027732	71241	Mm.66855	NM_027732	ENSMUSG00000011349	Dmrtc2	4933432E21Rik|Dmrt7	doublesex and mab-3 related transcription factor like family C2	protein-coding	0.090000	0.636816	
mm_34531.1	chr4	149347784	149347984	+	1	NA	NA	NA	13245	NR_131918	74310	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0.010000	0.427861	
mm_81459.1	chr9	109848502	109848702	+	1	NA	NA	NA	854	NM_009921	12796	Mm.3834	NM_009921	ENSMUSG00000038357	Camp	CAP18|Cnlp|Cramp|FALL39|MCLP	cathelicidin antimicrobial peptide	protein-coding	0.010000	0.562189	
mm_57981.1	chr6	135732665	135732865	-	1	NA	NA	NA	73852	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	0.030000	0.587065	
mm_30469.1	chr3	154330460	154330660	-	1	NA	NA	NA	0	NM_010713	16875	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.015000	0.537313	
mm_123222.1	chr14	59571897	59572097	-	1	NA	NA	NA	25962	NM_001168537	71891	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0.000000	0.412935	
mm_145202.1	chr18	49979455	49979655	+	1	NA	NA	NA	128	NM_001177759	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.105000	0.726368	
mm_72081.1	chr8	71570596	71570796	+	1	NA	NA	NA	1769	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.055000	0.606965	
mm_20041.1	chr2	120090915	120091115	-	1	NA	NA	NA	57582	NM_145378	211429	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	0.030000	0.462687	
mm_71178.1	chr8	40793185	40793385	+	1	NA	NA	NA	12	NM_001009548	384806	Mm.444736	NM_001009548	ENSMUSG00000046282	Adam20	4930529F22Rik|Adam38	a disintegrin and metallopeptidase domain 20	protein-coding	0.000000	0.383085	-66(CCCTATAAGAGA,-,0.00)
mm_100102.1	chr11	115765417	115765617	+	1	NA	NA	NA	84	NM_028014	71947	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	0.080000	0.721393	
mm_164264.1	chr15	100784248	100784448	+	1	NA	NA	NA	3094	NM_001347102	59033	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0.010000	0.393035	
mm_78294.1	chr9	22389192	22389392	+	1	NA	NA	NA	-86	NM_028390	68743	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0.105000	0.716418	
mm_59721.1	chr7	28784259	28784459	+	1	NA	NA	NA	-2845	NR_040339	100503790	Mm.446894	NR_040339		Gm19897	-	predicted gene, 19897	ncRNA	0.025000	0.507463	
mm_33152.1	chr4	125490332	125490532	+	1	NA	NA	NA	-399	NM_001081097	14807	Mm.40896	NM_001081097	ENSMUSG00000001985	Grik3	9630027E11|GluK3|GluR7-3|Glur-7|Glur7	glutamate receptor, ionotropic, kainate 3	protein-coding	0.140000	0.791045	
mm_44338.1	chr5	17397772	17397972	-	1	NA	NA	NA	-78250	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	0.000000	0.318408	
mm_35383.1	chr4	33247486	33247686	-	1	NA	NA	NA	1201	NM_001033225	108767	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.100000	0.726368	
mm_27393.1	chr3	50886959	50887159	-	1	NA	NA	NA	-337388	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.020000	0.517413	
mm_46579.1	chr5	107431777	107431977	-	1	NA	NA	NA	328	NM_027599	70902	Mm.55870	NM_027599	ENSMUSG00000033794	Lpcat2b	4921521K07Rik|Aytl1b	lysophosphatidylcholine acyltransferase 2B	protein-coding	0.030000	0.497512	
mm_126979.1	chr15	93435871	93436071	+	1	NA	NA	NA	37507	NM_001285863	223828	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.025000	0.487562	
mm_92062.1	chr10	62514264	62514464	-	1	NA	NA	NA	-6609	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.020000	0.497512	
mm_166222.1	chr5	64960719	64960919	-	1	NA	NA	NA	-785	NM_011604	21899	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0.025000	0.432836	
mm_55153.1	chr6	51469745	51469945	-	1	NA	NA	NA	49	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.125000	0.656716	
mm_9133.1	chr1	170841681	170841881	-	1	NA	NA	NA	25990	NM_001081304	226641	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.005000	0.427861	9(CCTTATATGGCG,+,0.00)
mm_64186.1	chr7	141459804	141460004	+	1	NA	NA	NA	-1190	NM_001025103	213573	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.025000	0.601990	
mm_45353.1	chr5	65912280	65912480	-	1	NA	NA	NA	48811	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.015000	0.557214	
mm_138362.1	chr17	34985450	34985650	+	1	NA	NA	NA	3420	NM_030597	27756	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.015000	0.542289	
mm_83261.1	chr9	42457500	42457700	-	1	NA	NA	NA	14626	NM_173038	272589	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0.035000	0.547264	
mm_69776.1	chr7	141017461	141017661	-	1	NA	NA	NA	-669	NM_001033632	213002	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.015000	0.477612	
mm_97004.1	chr11	70877010	70877210	+	1	NA	NA	NA	32349	NM_001291142	54189	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0.000000	0.407960	
mm_96153.1	chr11	61484798	61484998	+	1	NA	NA	NA	-533	NM_001347545	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.015000	0.626866	
mm_67046.1	chr7	67280552	67280752	-	1	NA	NA	NA	58036	NM_001191051	75099	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.005000	0.402985	
mm_5990.1	chr1	58504856	58505056	-	1	NA	NA	NA	153	NM_001271526	18393	Mm.3411	NM_008765	ENSMUSG00000026037	Orc2	AU041563|Orc2l	origin recognition complex, subunit 2	protein-coding	0.110000	0.711443	
mm_62894.1	chr7	116093213	116093413	+	1	NA	NA	NA	-67	NM_019772	56372	Mm.24231	NM_019772	ENSMUSG00000030663	1110004F10Rik	Smacp|Smap|sid2057|sid2057p	RIKEN cDNA 1110004F10 gene	protein-coding	0.070000	0.597015	
mm_31916.1	chr4	85205410	85205610	+	1	NA	NA	NA	54	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.130000	0.731343	
mm_113523.1	chr13	37825899	37826099	+	1	NA	NA	NA	-39	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.085000	0.646766	
mm_40870.1	chr5	74014119	74014319	+	1	NA	NA	NA	54192	NM_177561	69727	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.005000	0.442786	
mm_94189.1	chr10	128960854	128961054	-	1	NA	NA	NA	34	NM_027853	71664	Mm.337232	NM_027853	ENSMUSG00000025347	Mettl7b	0610006F02Rik|AI266817	methyltransferase like 7B	protein-coding	0.015000	0.567164	
mm_33227.1	chr4	126756894	126757094	+	1	NA	NA	NA	3224	NM_001035526	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.020000	0.492537	
mm_58088.1	chr6	137169617	137169817	-	1	NA	NA	NA	1	NM_001164214	232441	Mm.46233	NM_181988	ENSMUSG00000030222	Rerg	-	RAS-like, estrogen-regulated, growth-inhibitor	protein-coding	0.105000	0.716418	
mm_75600.1	chr8	61759950	61760150	-	1	NA	NA	NA	48	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.090000	0.686567	
mm_147036.1	chr18	34856132	34856332	-	1	NA	NA	NA	-4975	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.025000	0.547264	
mm_156912.1	chrX	169076682	169076882	+	1	NA	NA	NA	-36096	NM_001287530	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.005000	0.363184	-78(CCTTTTATATAT,+,0.00)
mm_30567.1	chr4	3790250	3790450	+	1	NA	NA	NA	45305	NM_026147	67427	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.010000	0.383085	0(GCTTTAAAACAC,+,0.00)
mm_138914.1	chr17	43604471	43604671	+	1	NA	NA	NA	-13062	NR_045444	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.000000	0.373134	
mm_152278.1	chr19	8838542	8838742	-	1	NA	NA	NA	604	NM_010316	14704	Mm.329700	NM_010316	ENSMUSG00000071658	Gng3	-	guanine nucleotide binding protein (G protein), gamma 3	protein-coding	0.020000	0.532338	
mm_101410.1	chr11	28574573	28574773	-	1	NA	NA	NA	9651	NM_001166661	216613	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	0.015000	0.368159	
mm_32751.1	chr4	116686303	116686503	+	1	NA	NA	NA	-381	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.015000	0.457711	
mm_119268.1	chr14	34053370	34053570	+	1	NA	NA	NA	0	NM_172808	239029	Mm.477093	NM_172808	ENSMUSG00000047441	Antxrl	1700112N15Rik|4933430J11	anthrax toxin receptor-like	protein-coding	0.005000	0.552239	
mm_23984.1	chr3	86103944	86104144	+	1	NA	NA	NA	19610	NM_001082414	27059	Mm.2454	NM_012059	ENSMUSG00000028082	Sh3d19	AW011754|Kryn	SH3 domain protein D19	protein-coding	0.050000	0.552239	
mm_95850.1	chr11	57801512	57801712	+	1	NA	NA	NA	-25	NM_001081168	50724	Mm.340083	NM_001081168	ENSMUSG00000020519	Sap30l	2310079P12Rik|AF006998|L55	SAP30-like	protein-coding	0.155000	0.771144	
mm_65835.1	chr7	29180605	29180805	-	1	NA	NA	NA	-32	NM_026545	57296	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	0.070000	0.577114	
mm_125826.1	chr15	74957139	74957339	+	1	NA	NA	NA	2133	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.010000	0.432836	
mm_149281.1	chr19	10608159	10608359	+	1	NA	NA	NA	2634	NM_015735	13194	Mm.289915	NM_015735	ENSMUSG00000024740	Ddb1	127kDa|AA408517|p127-Ddb1	damage specific DNA binding protein 1	protein-coding	0.030000	0.512438	78(CCTTTTCAAGGT,+,0.00)
mm_90142.1	chr10	118098176	118098376	+	1	NA	NA	NA	-43511	NM_001162904	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.005000	0.492537	
mm_106299.1	chr11	118248397	118248597	-	1	NA	NA	NA	95	NM_001112699	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.120000	0.746269	
mm_120267.1	chr14	63122416	63122616	+	1	NA	NA	NA	54	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.090000	0.691542	
mm_35145.1	chr4	11614909	11615109	-	1	NA	NA	NA	35347	NM_001256142	100503583	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	0.005000	0.353234	
mm_97081.1	chr11	73018917	73019117	+	1	NA	NA	NA	9	NM_018883	55984	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	0.135000	0.756219	
mm_81266.1	chr9	108049777	108049977	+	1	NA	NA	NA	587	NM_177910	331026	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	0.005000	0.492537	
mm_103680.1	chr11	79254574	79254774	-	1	NA	NA	NA	21	NM_019653	78889	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.075000	0.616915	
mm_1236.1	chr1	62795877	62796077	+	1	NA	NA	NA	-1245	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.055000	0.557214	
mm_19586.1	chr2	101882917	101883117	-	1	NA	NA	NA	-3245	NM_029635	76501	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0.020000	0.542289	
mm_161003.1	chr11	116581324	116581524	-	1	NA	NA	NA	23	NM_173755	217342	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	0.190000	0.850746	
mm_86297.1	chr9	122294320	122294520	-	1	NA	NA	NA	3	NM_001271873	102566	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	0.120000	0.711443	
mm_43657.1	chr5	138619214	138619414	+	1	NA	NA	NA	429	NM_001163797	24135	Mm.27575	NM_013844	ENSMUSG00000058291	Zfp68	KRAB3|KRAZ2|Zfp70|mszf22|mszf49	zinc finger protein 68	protein-coding	0.025000	0.487562	
mm_149610.1	chr19	16385645	16385845	+	1	NA	NA	NA	-49922	NM_008137	14675	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.020000	0.402985	-3(GCTTTTATACAA,+,0.00),64(GCTTTTATACGA,+,0.00)
mm_53194.1	chr6	125532456	125532656	+	1	NA	NA	NA	-20392	NM_011708	22371	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.005000	0.472637	
mm_168154.1	chr10	41415338	41415538	-	1	NA	NA	NA	-34920	NM_001277229	268294	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	0.010000	0.512438	-32(CCTTTTATAAGC,+,0.00),-32(CCTTTTATAAGC,-,0.00)
mm_121339.1	chr14	115092193	115092393	+	1	NA	NA	NA	78	NM_175500	103978	Mm.320791	NM_175500	ENSMUSG00000022112	Gpc5	A230034F01Rik	glypican 5	protein-coding	0.100000	0.701493	
mm_14060.1	chr2	122637754	122637954	+	1	NA	NA	NA	-33	NM_001004174	433470	Mm.36783	NM_001004174	ENSMUSG00000033213	AA467197	Nmes1|mir-147	expressed sequence AA467197	protein-coding	0.125000	0.676617	29(CTGCATATAAGG,-,0.00),31(GCATATAAGGGC,+,0.00)
mm_57325.1	chr6	124738513	124738713	-	1	NA	NA	NA	96	NM_001077705	15170	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.035000	0.567164	
mm_27462.1	chr3	52179892	52180092	-	1	NA	NA	NA	-74986	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.030000	0.646766	
mm_94113.1	chr10	128626392	128626592	-	1	NA	NA	NA	14	NM_013765	27370	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0.080000	0.537313	-43(TACTATATAAGC,-,0.00)
mm_67763.1	chr7	92874060	92874260	-	1	NA	NA	NA	72	NM_001080995	74041	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	0.095000	0.626866	
mm_160507.1	chr9	20212353	20212553	+	1	NA	NA	NA	246	NM_146903	258905	Mm.103798	NM_146903	ENSMUSG00000061457	Olfr871	MOR141-2	olfactory receptor 871	protein-coding	0.010000	0.422886	
mm_78937.1	chr9	45121071	45121271	+	1	NA	NA	NA	3295	NM_001014761	72821	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	0.015000	0.621891	
mm_60396.1	chr7	44475378	44475578	+	1	NA	NA	NA	5131	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.010000	0.552239	
mm_72606.1	chr8	84468575	84468775	+	1	NA	NA	NA	53311	NM_001252061	12286	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.025000	0.343284	
mm_161436.1	chr15	63845076	63845276	-	1	NA	NA	NA	0	NM_001168274	331063	Mm.273185	NM_177912	ENSMUSG00000056293	Gsdmc2	9130023H10|AI987692	gasdermin C2	protein-coding	0.010000	0.477612	-32(GCCTATATAAGG,-,0.00)
mm_69745.1	chr7	140955366	140955566	-	1	NA	NA	NA	495	NM_030694	80876	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.060000	0.567164	75(CCCTTTAGACTG,+,0.00)
mm_142972.1	chr17	56133799	56133999	-	1	NA	NA	NA	-47	NM_013662	20359	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0.020000	0.567164	
mm_60657.1	chr7	44929648	44929848	+	1	NA	NA	NA	-258	NM_001077264	11771	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	0.075000	0.611940	
mm_160653.1	chr9	114329958	114330158	+	1	NA	NA	NA	-77	NM_007535	12046	Mm.378887	NM_007535	ENSMUSG00000053820	Bcl2a1c	A1-c	B cell leukemia/lymphoma 2 related protein A1c	protein-coding	0.030000	0.527363	
mm_120500.1	chr14	66140841	66141041	+	1	NA	NA	NA	-19	NM_144803	110902	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	0.005000	0.502488	
mm_50869.1	chr6	55451923	55452123	+	1	NA	NA	NA	45	NM_007407	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	0.100000	0.736318	
mm_160774.1	chr10	120226983	120227183	+	1	NA	NA	NA	23	NM_025431	66225	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.090000	0.651741	
mm_122043.1	chr14	30009263	30009463	-	1	NA	NA	NA	363	NM_001136240	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.020000	0.522388	
mm_135954.1	chr16	74621133	74621333	-	1	NA	NA	NA	-210321	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.000000	0.368159	
mm_98030.1	chr11	85311159	85311359	+	1	NA	NA	NA	5	NM_016910	53892	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	0.130000	0.701493	
mm_44909.1	chr5	35663531	35663731	-	1	NA	NA	NA	16149	NM_001042615	78558	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.005000	0.457711	
mm_47458.1	chr5	123661557	123661757	-	1	NA	NA	NA	22704	NM_019765	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.010000	0.407960	
mm_78134.1	chr9	20888137	20888337	+	1	NA	NA	NA	62	NM_145610	235036	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog (Drosophila)	protein-coding	0.105000	0.666667	
mm_86780.1	chr10	20170712	20170912	+	1	NA	NA	NA	21892	NM_001198635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.030000	0.527363	64(CCTTTAATAGAG,+,0.00)
mm_166905.1	chr7	28810975	28811175	+	1	NA	NA	NA	185	NM_177301	15388	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.160000	0.756219	
mm_54109.1	chr6	17065387	17065587	-	1	NA	NA	NA	338	NM_207176	21753	Mm.436548	NM_011570	ENSMUSG00000029552	Tes	D6Ertd352e|TESS|Tes1|Tes2|testin2	testis derived transcript	protein-coding	0.080000	0.651741	
mm_11315.1	chr2	30364144	30364344	+	1	NA	NA	NA	11	NM_001242407	108958	Mm.254974	NM_175392	ENSMUSG00000026858	Miga2	5730472N09Rik|AA408683|AI790341|C9orf54|Fam73b|R74766	mitoguardin 2	protein-coding	0.085000	0.651741	
mm_97787.1	chr11	82783237	82783437	+	1	NA	NA	NA	2228	NM_010716	16882	Mm.277136	NM_010716	ENSMUSG00000020697	Lig3	D11Wsu78e	ligase III, DNA, ATP-dependent	protein-coding	0.015000	0.442786	-3(CCTTTTATGCAG,+,0.00)
mm_67171.1	chr7	73557822	73558022	-	1	NA	NA	NA	473	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.125000	0.731343	
mm_20531.1	chr2	131025053	131025253	-	1	NA	NA	NA	15245	NR_105969	102465606		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	0.005000	0.477612	
mm_125782.1	chr15	74716366	74716566	+	1	NA	NA	NA	1627	NM_028216	72373	Mm.46395	NM_028216	ENSMUSG00000022598	Psca	2210408B04Rik	prostate stem cell antigen	protein-coding	0.025000	0.567164	
mm_86116.1	chr9	115609644	115609844	-	1	NA	NA	NA	227925	NR_130329	100316675		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	0.010000	0.422886	
mm_28562.1	chr3	93444612	93444812	-	1	NA	NA	NA	2382	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.065000	0.631841	
mm_121729.1	chr14	18021801	18022001	-	1	NA	NA	NA	40257	NM_009380	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.005000	0.472637	
mm_53087.1	chr6	124997001	124997201	+	1	NA	NA	NA	381	NM_175696	319352	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.065000	0.666667	
mm_35845.1	chr4	48434911	48435111	-	1	NA	NA	NA	38411	NM_172304	269536	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0.000000	0.417910	
mm_172180.1	chr6	49236455	49236655	-	1	NA	NA	NA	-21601	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.030000	0.477612	
mm_96043.1	chr11	59557267	59557467	+	1	NA	NA	NA	14371	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.015000	0.328358	
mm_166467.1	chr5	142733970	142734170	+	1	NA	NA	NA	31969	NM_146257	243328	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.000000	0.472637	
mm_59773.1	chr7	28834070	28834270	+	1	NA	NA	NA	0	NM_010707	16857	Mm.210336	NM_010707		Lgals6	galectin-6	lectin, galactose binding, soluble 6	protein-coding	0.010000	0.592040	
mm_51277.1	chr6	72142038	72142238	+	1	NA	NA	NA	-18941	NR_045165	71265	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.020000	0.457711	-33(AGGTTTTAAAGC,-,0.00)
mm_48.1	chr1	6518573	6518773	+	1	NA	NA	NA	31442	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.383085	
mm_65609.1	chr7	27465782	27465982	-	1	NA	NA	NA	-7958	NM_133210	170742	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	0.010000	0.482587	
mm_35614.1	chr4	43428980	43429180	-	1	NA	NA	NA	54	NM_177377	329831	Mm.454466	NM_177377	ENSMUSG00000042788	Fam166b	4833436C18Rik	family with sequence similarity 166, member B	protein-coding	0.020000	0.587065	
mm_17623.1	chr2	31030696	31030896	-	1	NA	NA	NA	48517	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.015000	0.467662	
mm_52178.1	chr6	99264932	99265132	+	1	NA	NA	NA	1483	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.010000	0.293532	
mm_136965.1	chr17	15705020	15705220	+	1	NA	NA	NA	153	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.170000	0.771144	
mm_72292.1	chr8	75213263	75213463	+	1	NA	NA	NA	-581	NM_029182	75141	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.095000	0.666667	
mm_172874.1	chr9	42761685	42761885	-	1	NA	NA	NA	182586	NM_175481	110637	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0.020000	0.512438	
mm_95282.1	chr11	45890555	45890755	+	1	NA	NA	NA	38691	NM_001045520	216705	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.065000	0.532338	
mm_43596.1	chr5	137778882	137779082	+	1	NA	NA	NA	64	NM_027242	69871	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0.080000	0.641791	
mm_78924.1	chr9	45042566	45042766	+	1	NA	NA	NA	322	NM_007962	14012	Mm.33240	NM_007962	ENSMUSG00000032092	Mpzl2	Eva|Eva1	myelin protein zero-like 2	protein-coding	0.055000	0.631841	
mm_172839.1	chr9	30872492	30872692	-	1	NA	NA	NA	48358	NM_001329420	235130	Mm.65867	NM_001024139	ENSMUSG00000033453	Adamts15	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15	protein-coding	0.025000	0.462687	
mm_76689.1	chr8	94153872	94154072	-	1	NA	NA	NA	1365	NM_013603	17751	Mm.2064	NM_013603	ENSMUSG00000031760	Mt3	Mt-3	metallothionein 3	protein-coding	0.015000	0.582090	
mm_64379.1	chr7	142466837	142467037	+	1	NA	NA	NA	-4906	NM_001271508	16985	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.005000	0.422886	
mm_121512.1	chr14	121977738	121977938	+	1	NA	NA	NA	-12645	NM_183031	321019	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.005000	0.368159	
mm_71900.1	chr8	70042940	70043140	+	1	NA	NA	NA	227	NM_027481	70616	Mm.17665	NM_027481	ENSMUSG00000011306	Sugp1	5730496N02Rik|Sf4	SURP and G patch domain containing 1	protein-coding	0.065000	0.577114	
mm_141780.1	chr17	34295973	34296173	-	1	NA	NA	NA	-8302	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.035000	0.507463	
mm_92685.1	chr10	80623528	80623728	-	1	NA	NA	NA	848	NM_134002	103236	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.030000	0.601990	
mm_9088.1	chr1	168432115	168432315	-	1	NA	NA	NA	-46	NM_008783	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.010000	0.592040	
mm_23176.1	chr3	40785901	40786101	+	1	NA	NA	NA	-13950	NM_173169	20873	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo-like kinase 4	protein-coding	0.005000	0.398010	
mm_72881.1	chr8	88951654	88951854	+	1	NA	NA	NA	-72981	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.030000	0.562189	
mm_109038.1	chr12	104127899	104128099	+	1	NA	NA	NA	3	NM_173024	271047	Mm.120265	NM_173024	ENSMUSG00000066364	Serpina3b	6A1|A030003A19Rik	serine (or cysteine) peptidase inhibitor, clade A, member 3B	protein-coding	0.020000	0.457711	
mm_50011.1	chr6	41062197	41062397	+	1	NA	NA	NA	-26788	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.447761	
mm_45843.1	chr5	87697188	87697388	-	1	NA	NA	NA	2137	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.000000	0.288557	
mm_76662.1	chr8	93279632	93279832	-	1	NA	NA	NA	4	NM_144930	234564	Mm.29110	NM_144930	ENSMUSG00000031725	Ces1f	AU018778|CesML1|TGH-2	carboxylesterase 1F	protein-coding	0.005000	0.502488	
mm_62363.1	chr7	100537107	100537307	+	1	NA	NA	NA	107	NM_183270	68185	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	0.080000	0.626866	
mm_135043.1	chr16	33056093	33056293	-	1	NA	NA	NA	-7	NM_178378	69707	Mm.227918	NM_178378	ENSMUSG00000035578	Iqcg	2400003L07Rik|G1-374-12|esgd12d|repro1|stubby12d	IQ motif containing G	protein-coding	0.040000	0.447761	
mm_8969.1	chr1	165219022	165219222	-	1	NA	NA	NA	17836	NM_145513	226591	Mm.21520	NM_145513	ENSMUSG00000040843	Tiprl	1810011K17Rik	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	protein-coding	0.005000	0.502488	
mm_63084.1	chr7	122289051	122289251	+	1	NA	NA	NA	26	NM_008855	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.115000	0.756219	
mm_105592.1	chr11	106736357	106736557	-	1	NA	NA	NA	-14769	NM_001271375	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.015000	0.457711	
mm_4883.1	chr1	187997759	187997959	+	1	NA	NA	NA	32	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.045000	0.532338	
mm_60427.1	chr7	44476569	44476769	+	1	NA	NA	NA	6322	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.393035	
mm_76630.1	chr8	91801828	91802028	-	1	NA	NA	NA	-274	NM_008393	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.070000	0.572139	
mm_137486.1	chr17	26941197	26941397	+	1	NA	NA	NA	-155	NM_001281491	240057	Mm.328888	NM_001281491	ENSMUSG00000067629	Syngap1	Gm1963|Syngap	synaptic Ras GTPase activating protein 1 homolog (rat)	protein-coding	0.025000	0.631841	
mm_7774.1	chr1	131271770	131271970	-	1	NA	NA	NA	7693	NM_019777	56489	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.040000	0.562189	
mm_112001.1	chr12	110838987	110839187	-	1	NA	NA	NA	1852	NM_011973	26448	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0.015000	0.557214	
mm_58939.1	chr7	18176373	18176573	+	1	NA	NA	NA	-21	NM_001003393	232925	Mm.37237	NM_001003393	ENSMUSG00000066756	Igfl3	Gm580|Igfl|Rprc483	IGF-like family member 3	protein-coding	0.000000	0.398010	
mm_171144.1	chr3	152213938	152214138	+	1	NA	NA	NA	3580	NM_057172	51886	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	0.005000	0.328358	
mm_23376.1	chr3	55533894	55534094	+	1	NA	NA	NA	72236	NM_001195540	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.005000	0.368159	-40(GGTCCTTAAAGG,-,0.00),-39(GTCCTTAAAGGG,-,0.00)
mm_78166.1	chr9	21029334	21029534	+	1	NA	NA	NA	61	NM_023892	78369	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.060000	0.646766	
mm_155831.1	chrX	100730084	100730284	+	1	NA	NA	NA	-2	NM_001305941	71584	Mm.283495	NM_023608	ENSMUSG00000019359	Gdpd2	9130017L10Rik|Gde3|Obdpf	glycerophosphodiester phosphodiesterase domain containing 2	protein-coding	0.035000	0.646766	
mm_38048.1	chr4	133968516	133968716	-	1	NA	NA	NA	-625	NM_016957	15331	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	0.040000	0.616915	
mm_161388.1	chr14	78725050	78725250	-	1	NA	NA	NA	-61	NM_001081336	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.090000	0.726368	
mm_62544.1	chr7	102335671	102335871	+	1	NA	NA	NA	67947	NM_009287	20866	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0.005000	0.348259	
mm_133471.1	chr16	89274354	89274554	+	1	NA	NA	NA	68593	NM_001163615	622935	Mm.459837	NM_001163615	ENSMUSG00000091039	Krtap20-2	1190004K03Rik|EG622935|Gm6371	keratin associated protein 20-2	protein-coding	0.000000	0.452736	-32(GTATATAAAAGG,-,0.00)
mm_80754.1	chr9	95511178	95511378	+	1	NA	NA	NA	718	NM_026476	67958	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0.045000	0.597015	
mm_114664.1	chr13	78199052	78199252	+	1	NA	NA	NA	-279	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.185000	0.830846	
mm_70084.1	chr7	142654227	142654427	-	1	NA	NA	NA	669	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.060000	0.592040	
mm_66147.1	chr7	31137036	31137236	-	1	NA	NA	NA	-10113	NM_011322	20266	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	0.005000	0.447761	
mm_44982.1	chr5	37336751	37336951	-	1	NA	NA	NA	30	NM_021292	59056	Mm.479678	NM_021292	ENSMUSG00000029122	Evc	-	Ellis van Creveld gene syndrome	protein-coding	0.085000	0.681592	
mm_4702.1	chr1	180850999	180851199	+	1	NA	NA	NA	-52	NM_145943	208768	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.120000	0.681592	
mm_97230.1	chr11	75651528	75651728	+	1	NA	NA	NA	119	NM_008659	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.090000	0.686567	
mm_77827.1	chr9	3904071	3904271	+	1	NA	NA	NA	371822	NM_001033322	234889	Mm.91240	NM_001033322	ENSMUSG00000041624	Gucy1a2	6330407I18Rik|A230060L24Rik	guanylate cyclase 1, soluble, alpha 2	protein-coding	0.000000	0.333333	
mm_36474.1	chr4	82850551	82850751	-	1	NA	NA	NA	9010	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0.020000	0.522388	
mm_97594.1	chr11	78948200	78948400	+	1	NA	NA	NA	23009	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.025000	0.582090	
mm_74023.1	chr8	121729881	121730081	+	1	NA	NA	NA	-578	NM_020605	57340	Mm.306870	NM_020605	ENSMUSG00000025318	Jph3	JP-3|Jp3	junctophilin 3	protein-coding	0.155000	0.781095	1(CCCTTTAAATCC,+,0.00)
mm_172748.1	chr8	83594338	83594538	-	1	NA	NA	NA	53	NM_027179	106529	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	0.065000	0.641791	
mm_163806.1	chr14	19415951	19416151	+	1	NA	NA	NA	186536	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.338308	
mm_51235.1	chr6	71493964	71494164	+	1	NA	NA	NA	187	NM_001308303	22644	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	0.145000	0.706468	
mm_111694.1	chr12	103654965	103655165	-	1	NA	NA	NA	2153	NM_007618	12401	Mm.290079	NM_007618	ENSMUSG00000060807	Serpina6	Cbg	serine (or cysteine) peptidase inhibitor, clade A, member 6	protein-coding	0.005000	0.427861	-65(GGCTATTAAAAA,-,0.00)
mm_47435.1	chr5	123180592	123180792	-	1	NA	NA	NA	1994	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.050000	0.582090	
mm_150526.1	chr19	39060968	39061168	+	1	NA	NA	NA	62	NM_028191	72303	Mm.482578	NM_028191	ENSMUSG00000067231	Cyp2c65	2210009K14Rik	cytochrome P450, family 2, subfamily c, polypeptide 65	protein-coding	0.000000	0.432836	-94(CCTTATATAAGC,+,0.00),-94(CCTTATATAAGC,-,0.00)
mm_41029.1	chr5	84123115	84123315	+	1	NA	NA	NA	294167	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.055000	0.462687	
mm_39050.1	chr4	153482678	153482878	-	1	NA	NA	NA	52	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	0.150000	0.746269	
mm_123477.1	chr14	65975679	65975879	-	1	NA	NA	NA	7296	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.045000	0.582090	
mm_74888.1	chr8	25102279	25102479	-	1	NA	NA	NA	-568	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.095000	0.691542	
mm_13766.1	chr2	118559454	118559654	+	1	NA	NA	NA	-9868	NM_138313	171543	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.010000	0.427861	-53(GCTTTTATGTAG,+,0.00)
mm_74288.1	chr8	125743653	125743853	+	1	NA	NA	NA	9550	NM_001310688	66566	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.005000	0.492537	
mm_144821.1	chr18	36342831	36343031	+	1	NA	NA	NA	-5693	NM_001081365	66060	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.020000	0.502488	
mm_123864.1	chr14	72539425	72539625	-	1	NA	NA	NA	170478	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.010000	0.407960	
mm_113350.1	chr13	31806900	31807100	+	1	NA	NA	NA	354	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.140000	0.756219	
mm_26205.1	chr3	138550494	138550694	+	1	NA	NA	NA	23326	NM_001313980	13684	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.015000	0.373134	45(GCTTCTAAAAGG,-,0.00)
mm_59462.1	chr7	27243268	27243468	+	1	NA	NA	NA	10355	NM_133770	76889	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0.015000	0.636816	
mm_3624.1	chr1	152766446	152766646	+	1	NA	NA	NA	4	NM_026369	67771	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	0.150000	0.781095	
mm_36708.1	chr4	97584508	97584708	-	1	NA	NA	NA	-17	NR_015513	319865	Mm.373807	NM_177023		E130114P18Rik	-	RIKEN cDNA E130114P18 gene	ncRNA	0.025000	0.492537	
mm_117972.1	chr13	100015505	100015705	-	1	NA	NA	NA	34	NM_030026	78038	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	0.065000	0.661692	
mm_153169.1	chr19	34493368	34493568	-	1	NA	NA	NA	-18333	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.015000	0.537313	
mm_146744.1	chr18	15760056	15760256	-	1	NA	NA	NA	-42110	NM_199055	71367	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0.140000	0.736318	
mm_120993.1	chr14	79397870	79398070	+	1	NA	NA	NA	198	NM_145960	211253	Mm.35306	NM_145960	ENSMUSG00000022022	Mtrf1	A830062K05Rik|MtRF-1	mitochondrial translational release factor 1	protein-coding	0.040000	0.467662	
mm_80404.1	chr9	77636520	77636720	+	1	NA	NA	NA	-112	NM_172925	244923	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0.015000	0.557214	
mm_117950.1	chr13	99435437	99435637	-	1	NA	NA	NA	-22711	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.497512	
mm_122076.1	chr14	30604860	30605060	-	1	NA	NA	NA	5350	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.015000	0.552239	
mm_111267.1	chr12	85270528	85270728	-	1	NA	NA	NA	-29	NM_175337	217716	Mm.311981	NM_145446	ENSMUSG00000021245	Mlh3	AV125803|BB126472	mutL homolog 3	protein-coding	0.100000	0.601990	
mm_145748.1	chr18	64386554	64386754	+	1	NA	NA	NA	46290	NM_194268	225631	Mm.234723	NM_194268	ENSMUSG00000045991	Onecut2	C730009D12|OC-2|Oc2	one cut domain, family member 2	protein-coding	0.005000	0.427861	
mm_172654.1	chr8	36094732	36094932	+	1	NA	NA	NA	4	NM_172911	244418	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.145000	0.766169	
mm_128975.1	chr15	74832402	74832602	-	1	NA	NA	NA	9141	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.010000	0.412935	
mm_152362.1	chr19	10092100	10092300	-	1	NA	NA	NA	9303	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	0.005000	0.507463	
mm_117945.1	chr13	99434913	99435113	-	1	NA	NA	NA	-22187	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.005000	0.452736	
mm_7693.1	chr1	128747445	128747645	-	1	NA	NA	NA	-155246	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.035000	0.512438	-34(GAGTATAAATAG,-,0.00)
mm_77467.1	chr8	122424974	122425174	-	1	NA	NA	NA	2989	NM_145834	234836	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.020000	0.621891	
mm_84640.1	chr9	71168577	71168777	-	1	NA	NA	NA	-99	NR_110517	102635087	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	0.030000	0.552239	
mm_128039.1	chr15	25364732	25364932	-	1	NA	NA	NA	48932	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.070000	0.616915	
mm_127091.1	chr15	97784365	97784565	+	1	NA	NA	NA	100	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.110000	0.746269	
mm_70416.1	chr8	11458410	11458610	+	1	NA	NA	NA	-19419	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.015000	0.527363	
mm_68813.1	chr7	125636421	125636621	-	1	NA	NA	NA	33092	NM_021887	60504	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.015000	0.527363	
mm_41361.1	chr5	90506552	90506752	+	1	NA	NA	NA	-12297	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.005000	0.487562	
mm_57728.1	chr6	128945441	128945641	-	1	NA	NA	NA	11160	NM_027562	70809	Mm.439891	NM_027562	ENSMUSG00000000248	Clec2g	4632413B12Rik|Clr-c|Clr-d|Clrc|Clrd|Clrx|Ddv10|Ocilrp1	C-type lectin domain family 2, member g	protein-coding	0.005000	0.398010	
mm_144805.1	chr18	36281296	36281496	+	1	NA	NA	NA	234	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.170000	0.825871	
mm_106174.1	chr11	116679981	116680181	-	1	NA	NA	NA	5484	NR_028570	100216538		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0.060000	0.597015	
mm_53097.1	chr6	125039745	125039945	+	1	NA	NA	NA	-3	NM_133345	28019	Mm.262547	NM_133345	ENSMUSG00000030330	Ing4	D6Wsu147e|D6Xrf92|p29ING4	inhibitor of growth family, member 4	protein-coding	0.030000	0.477612	
mm_128116.1	chr15	28058821	28059021	-	1	NA	NA	NA	-33073	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.015000	0.427861	-22(GTGTTTAAAAGG,-,0.00)
mm_145351.1	chr18	56504604	56504804	+	1	NA	NA	NA	-33435	NR_106160	102465790		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	0.010000	0.507463	
mm_23492.1	chr3	60504936	60505136	+	1	NA	NA	NA	3857	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.010000	0.388060	
mm_15825.1	chr2	164613424	164613624	+	1	NA	NA	NA	102	NM_001080550	277343	Mm.383292	NM_001080550	ENSMUSG00000070533	Wfdc8	Gm706	WAP four-disulfide core domain 8	protein-coding	0.020000	0.562189	
mm_16219.1	chr2	173089803	173090003	+	1	NA	NA	NA	29622	NM_001081387	664799	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris|OTTMUSG00000016680	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.010000	0.373134	-85(CTGCTTATAAGG,-,0.00),-83(GCTTATAAGGAG,+,0.00),-60(CTCTTTAGAGAC,+,0.00)
mm_100298.1	chr11	117832153	117832353	+	1	NA	NA	NA	-6239	NM_009387	21877	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.045000	0.606965	
mm_130280.1	chr15	96709535	96709735	-	1	NA	NA	NA	-9937	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.105000	0.741294	
mm_49813.1	chr6	36389314	36389514	+	1	NA	NA	NA	-1180	NR_015589	319472	Mm.226434	NR_015589	ENSMUSG00000073154	9330158H04Rik	-	RIKEN cDNA 9330158H04 gene	ncRNA	0.030000	0.577114	
mm_97606.1	chr11	78949931	78950131	+	1	NA	NA	NA	24740	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.030000	0.606965	
mm_126027.1	chr15	76701376	76701576	+	1	NA	NA	NA	-66	NM_027122	69572	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	0.060000	0.606965	
mm_82869.1	chr9	32423046	32423246	-	1	NA	NA	NA	29161	NM_001168354	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.005000	0.353234	-81(GAATTTAAAAGA,-,0.00),-56(GTGTATTTAAGA,-,0.00)
mm_139169.1	chr17	47557817	47558017	+	1	NA	NA	NA	-35550	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.427861	
mm_2276.1	chr1	91298244	91298444	+	1	NA	NA	NA	6	NM_016717	50880	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	0.105000	0.686567	
mm_85063.1	chr9	90255838	90256038	-	1	NA	NA	NA	14831	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.010000	0.577114	
mm_37889.1	chr4	132530706	132530906	-	1	NA	NA	NA	4608	NM_007512	11983	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0.015000	0.402985	-25(CTTTATAGAGAG,+,0.00)
mm_93371.1	chr10	105315606	105315806	-	1	NA	NA	NA	258773	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.015000	0.452736	
mm_157092.1	chrX	9437075	9437275	-	1	NA	NA	NA	32149	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.333333	64(GCTTAAATACCT,+,0.00)
mm_131387.1	chr16	14207607	14207807	+	1	NA	NA	NA	44432	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.010000	0.532338	
mm_49641.1	chr6	30805335	30805535	+	1	NA	NA	NA	64136	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.005000	0.517413	
mm_47214.1	chr5	121009416	121009616	-	1	NA	NA	NA	22	NM_011286	19894	Mm.181166	NM_011286	ENSMUSG00000029608	Rph3a	2900002P20Rik|AU022689|AW108370	rabphilin 3A	protein-coding	0.060000	0.676617	
mm_68316.1	chr7	106117212	106117412	-	1	NA	NA	NA	-38164	NR_030719	668108	Mm.429088	NR_030719		Gm8979	EG668108|Gm21884	very large inducible GTPase 1 pseudogene	pseudo	0.000000	0.427861	
mm_30953.1	chr4	33248573	33248773	+	1	NA	NA	NA	114	NM_001033225	108767	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.100000	0.666667	
mm_151682.1	chr19	4269070	4269270	-	1	NA	NA	NA	2	NM_198113	245857	Mm.248388	NM_198113	ENSMUSG00000034616	Ssh3	BC028922|SSH-3|mSSH-3L	slingshot homolog 3 (Drosophila)	protein-coding	0.070000	0.646766	-58(GGCCCTTTAAGG,-,0.00),-57(GCCCTTTAAGGG,-,0.00),-56(CCCTTTAAGGGC,+,0.00),-55(CCTTTAAGGGCC,+,0.00)
mm_67138.1	chr7	73105065	73105265	-	1	NA	NA	NA	-3097	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	0.000000	0.472637	
mm_105694.1	chr11	107794648	107794848	-	1	NA	NA	NA	-284	NM_019431	54377	Mm.103724	NM_019431	ENSMUSG00000020723	Cacng4	AI413107|AW491861	calcium channel, voltage-dependent, gamma subunit 4	protein-coding	0.185000	0.850746	
mm_165311.1	chr2	102947942	102948142	+	1	NA	NA	NA	-46377	NM_001039150	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.010000	0.477612	
mm_62616.1	chr7	107209294	107209494	+	1	NA	NA	NA	-51	NM_029660	76572	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	0.110000	0.706468	
mm_146527.1	chr18	5273167	5273367	-	1	NA	NA	NA	61172	NM_178722	240186	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.005000	0.412935	
mm_97030.1	chr11	72266316	72266516	+	1	NA	NA	NA	188	NM_001004148	237831	Mm.340778	NM_001004148	ENSMUSG00000020805	Slc13a5	Indy|NaC2/NaCT|Nact|mINDY	solute carrier family 13 (sodium-dependent citrate transporter), member 5	protein-coding	0.075000	0.616915	
mm_158771.1	chrX	166618580	166618780	-	1	NA	NA	NA	-32964	NM_019397	54156	Mm.37707	NM_019397	ENSMUSG00000000402	Egfl6	Maeg	EGF-like-domain, multiple 6	protein-coding	0.010000	0.462687	-62(TTCCATAAAAGA,-,0.00)
mm_116707.1	chr13	51015082	51015282	-	1	NA	NA	NA	85545	NR_029463	77428	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0.000000	0.497512	
mm_69950.1	chr7	142371006	142371206	-	1	NA	NA	NA	1153	NM_177265	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.035000	0.621891	30(GAGTCTAAAAGC,-,0.00)
mm_142528.1	chr17	46438320	46438520	-	1	NA	NA	NA	57	NM_144856	108114	Mm.387538	NM_144856	ENSMUSG00000067144	Slc22a7	NLT|OAT2	solute carrier family 22 (organic anion transporter), member 7	protein-coding	0.015000	0.562189	
mm_121885.1	chr14	21740308	21740508	-	1	NA	NA	NA	2471	NM_013849	27389	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.020000	0.567164	
mm_148873.1	chr19	6497709	6497909	+	1	NA	NA	NA	45261	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.080000	0.721393	
mm_50500.1	chr6	49035926	49036126	+	1	NA	NA	NA	-492	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.020000	0.442786	
mm_20673.1	chr2	132252990	132253190	-	1	NA	NA	NA	90	NM_011045	18538	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0.070000	0.592040	
mm_68173.1	chr7	103826548	103826748	-	1	NA	NA	NA	1280	NM_001201391	100503605	Mm.288567	NM_001201391	ENSMUSG00000052305	Hbb-bs	Beta-s|Hbbt1|Hbbt2	hemoglobin, beta adult s chain	protein-coding	0.010000	0.482587	
mm_127407.1	chr15	101247307	101247507	+	1	NA	NA	NA	-19439	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.005000	0.507463	
mm_60331.1	chr7	44310098	44310298	+	1	NA	NA	NA	-66	NM_001034115	243961	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3/ankyrin domain gene 1	protein-coding	0.065000	0.671642	
mm_41090.1	chr5	87694420	87694620	+	1	NA	NA	NA	4905	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.010000	0.427861	
mm_103168.1	chr11	70459408	70459608	-	1	NA	NA	NA	-114	NM_001029929	574428	Mm.472771	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.060000	0.592040	
mm_3389.1	chr1	140381433	140381633	+	1	NA	NA	NA	135276	NM_001081027	240776	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0.000000	0.412935	
mm_75411.1	chr8	46471545	46471745	-	1	NA	NA	NA	608	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.110000	0.666667	
mm_60299.1	chr7	44016194	44016394	+	1	NA	NA	NA	3597	NM_010115	13647	Mm.439663	NM_010115		Egfbp2	Egfbp-2|Klk1b26|mGk-13	epidermal growth factor binding protein type B	protein-coding	0.005000	0.527363	
mm_70253.1	chr8	3500388	3500588	+	1	NA	NA	NA	-31	NM_053177	94178	Mm.8356	NM_053177	ENSMUSG00000004567	Mcoln1	2210015I05Rik|TRPML1|mucolipidin	mucolipin 1	protein-coding	0.130000	0.711443	
mm_37705.1	chr4	129377842	129378042	-	1	NA	NA	NA	86	NM_028603	73680	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	0.065000	0.601990	
mm_83369.1	chr9	44454665	44454865	-	1	NA	NA	NA	2	NM_009476	22269	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	0.010000	0.611940	
mm_142787.1	chr17	50164001	50164201	-	1	NA	NA	NA	26396	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.000000	0.422886	
mm_4562.1	chr1	177447184	177447384	+	1	NA	NA	NA	1463	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.030000	0.502488	
mm_38346.1	chr4	137769865	137770065	-	1	NA	NA	NA	-3490	NM_001287172	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.020000	0.606965	
mm_112500.1	chr13	8202829	8203029	+	1	NA	NA	NA	63	NM_052977	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding	0.050000	0.567164	
mm_171836.1	chr5	149052803	149053003	-	1	NA	NA	NA	154	NM_010439	15289	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.140000	0.751244	
mm_141526.1	chr17	31811360	31811560	-	1	NA	NA	NA	44332	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.005000	0.502488	
mm_123295.1	chr14	61609769	61609969	-	1	NA	NA	NA	2412	NM_001039105	328424	Mm.224464	NM_206974	ENSMUSG00000046168	Kcnrg	Clld4|E030012H22Rik|Gm745	potassium channel regulator	protein-coding	0.005000	0.472637	
mm_55541.1	chr6	70791943	70792143	-	1	NA	NA	NA	132	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.130000	0.781095	
mm_142373.1	chr17	44658487	44658687	-	1	NA	NA	NA	77589	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.025000	0.492537	
mm_167879.1	chrX	42227468	42227668	+	1	NA	NA	NA	25713	NM_001290713	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.000000	0.348259	
mm_8348.1	chr1	150197418	150197618	-	1	NA	NA	NA	-32570	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.010000	0.422886	-33(ATTTTTATAGGG,+,0.00)
mm_144101.1	chr18	3507830	3508030	+	1	NA	NA	NA	-27	NM_026505	68010	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	0.105000	0.711443	
mm_73448.1	chr8	106282144	106282344	+	1	NA	NA	NA	15	NR_126090	75044	Mm.445896	NR_126090		4930506A18Rik	-	RIKEN cDNA 4930506A18 gene	ncRNA	0.005000	0.482587	
mm_162074.1	chrX	20617467	20617667	-	1	NA	NA	NA	-3	NM_019435	104130	Mm.30084	NM_019435	ENSMUSG00000031059	Ndufb11	D5Bwg0566e|D5Bwg0577e|NP15.6|Np15	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 11	protein-coding	0.015000	0.447761	
mm_41597.1	chr5	95973822	95974022	+	1	NA	NA	NA	16983	NM_018866	55985	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.070000	0.512438	
mm_163039.1	chr11	53350880	53351080	+	1	NA	NA	NA	213	NM_033565	93736	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.155000	0.800995	
mm_18962.1	chr2	76798336	76798536	-	1	NA	NA	NA	123121	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.005000	0.383085	
mm_7232.1	chr1	93429309	93429509	-	1	NA	NA	NA	16292	NM_001301364	110611	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0.015000	0.457711	
mm_7190.1	chr1	92906774	92906974	-	1	NA	NA	NA	-115	NM_175118	67446	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	0.030000	0.601990	
mm_166397.1	chr5	135053317	135053517	-	1	NA	NA	NA	-10789	NM_025362	66114	Mm.178012	NM_025362	ENSMUSG00000061118	Dnajc30	1300007M11Rik|Wbscr18	DnaJ heat shock protein family (Hsp40) member C30	protein-coding	0.030000	0.562189	
mm_29628.1	chr3	121548043	121548243	-	1	NA	NA	NA	-15799	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.020000	0.462687	
mm_107458.1	chr12	37241526	37241726	+	1	NA	NA	NA	-13	NM_178767	319660	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	0.005000	0.353234	-62(CCTTTTAGAGAA,+,0.00)
mm_105663.1	chr11	107387711	107387911	-	1	NA	NA	NA	82909	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.000000	0.422886	
mm_69713.1	chr7	140137447	140137647	-	1	NA	NA	NA	-17	NM_199301	212508	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	0.075000	0.611940	
mm_46657.1	chr5	108674695	108674895	-	1	NA	NA	NA	1	NM_001310692	231583	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0.010000	0.477612	
mm_12355.1	chr2	69749498	69749698	+	1	NA	NA	NA	26510	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.015000	0.432836	
mm_9371.1	chr1	172206620	172206820	-	1	NA	NA	NA	84	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.095000	0.741294	
mm_39302.1	chr5	7179201	7179401	+	1	NA	NA	NA	-124863	NM_027603	70920	Mm.158494	NM_027603	ENSMUSG00000040514	4921511H03Rik	-	RIKEN cDNA 4921511H03 gene	protein-coding	0.035000	0.487562	
mm_81320.1	chr9	108479829	108480029	+	1	NA	NA	NA	67	NM_008483	16779	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	0.030000	0.552239	
mm_7260.1	chr1	93825377	93825577	-	1	NA	NA	NA	237	NM_001310767	98314	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	0.065000	0.572139	
mm_127192.1	chr15	99030762	99030962	+	1	NA	NA	NA	971	NM_009448	22146	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.050000	0.601990	
mm_51772.1	chr6	88075281	88075481	+	1	NA	NA	NA	-9092	NM_133933	103963	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	0.040000	0.567164	
mm_39009.1	chr4	152033657	152033857	-	1	NA	NA	NA	4733	NM_031867	110326	Mm.29232	NM_031867	ENSMUSG00000028950	Tas1r1	Gpr70|T1r1|TR1	taste receptor, type 1, member 1	protein-coding	0.015000	0.572139	
mm_157447.1	chrX	41843175	41843375	-	1	NA	NA	NA	68626	NM_001033422	331401	Mm.259498	NM_001033422	ENSMUSG00000037475	Thoc2	6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2	THO complex 2	protein-coding	0.010000	0.298507	-7(TTTTTTAAAGCA,+,0.00)
mm_156717.1	chrX	159701252	159701452	+	1	NA	NA	NA	-7249	NM_021389	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.000000	0.343284	-70(TCCTTTTAATGC,-,0.00)
mm_76710.1	chr8	94601570	94601770	-	1	NA	NA	NA	56	NM_028221	102122	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	0.060000	0.497512	
mm_102548.1	chr11	61342712	61342912	-	1	NA	NA	NA	48	NM_001033542	380701	Mm.340166	NM_001033542	ENSMUSG00000069855	Slc47a2	4933429E10Rik	solute carrier family 47, member 2	protein-coding	0.115000	0.721393	
mm_93398.1	chr10	107643467	107643667	-	1	NA	NA	NA	76460	NM_001081432	237523	Mm.391418	NM_001081432	ENSMUSG00000035916	Ptprq	-	protein tyrosine phosphatase, receptor type, Q	protein-coding	0.040000	0.442786	-77(CCCCATTAAAGC,-,0.00),43(CTTTATATAGTT,+,0.00)
mm_88470.1	chr10	77582309	77582509	+	1	NA	NA	NA	642	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.030000	0.537313	
mm_37296.1	chr4	119189893	119190093	-	1	NA	NA	NA	18	NM_013848	27028	Mm.290753	NM_013848	ENSMUSG00000028644	Ermap	AA409279|AI666418	erythroblast membrane-associated protein	protein-coding	0.020000	0.512438	-34(GTTTATAGGGAC,+,0.00)
mm_15642.1	chr2	163059114	163059314	+	1	NA	NA	NA	4579	NM_008652	17865	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	0.010000	0.462687	
mm_101948.1	chr11	50238360	50238560	-	1	NA	NA	NA	72	NM_001313968	17001	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.040000	0.592040	
mm_160809.1	chr11	17151039	17151239	+	1	NA	NA	NA	-8159	NM_024459	19058	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0.015000	0.457711	
mm_9514.1	chr1	173741706	173741906	-	1	NA	NA	NA	3	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.005000	0.447761	
mm_154342.1	chrM	4789	4989	+	1	NA	NA	NA	NA	NA									0.015000	0.378109	
mm_11556.1	chr2	32741376	32741576	+	1	NA	NA	NA	-460	NM_027529	70730	Mm.401360	NM_027529	ENSMUSG00000009551	6330409D20Rik	AA517851	RIKEN cDNA 6330409D20 gene	protein-coding	0.100000	0.761194	
mm_137771.1	chr17	29490810	29491010	+	1	NA	NA	NA	-135	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.105000	0.746269	
mm_117157.1	chr13	61570003	61570203	-	1	NA	NA	NA	24	NM_026906	117066	Mm.485905	NM_026906	ENSMUSG00000074870	Cts3	1600000I23Rik	cathepsin 3	protein-coding	0.000000	0.477612	-54(GGCTTTATAAAG,-,0.00),-52(CTTTATAAAGAG,+,0.00)
mm_14726.1	chr2	144033031	144033231	+	1	NA	NA	NA	29	NM_207275	403171	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	0.020000	0.532338	
mm_172701.1	chr8	63933238	63933438	-	1	NA	NA	NA	18832	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding	0.030000	0.587065	
mm_172399.1	chr7	142140923	142141123	+	1	NA	NA	NA	-4940	NM_001347556	105243089		NM_001347556	ENSMUSG00000110091	Gm39115	-	predicted gene, 39115	protein-coding	0.000000	0.457711	
mm_167788.1	chr9	123042972	123043172	+	1	NA	NA	NA	8331	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.000000	0.378109	
mm_125056.1	chr15	25910268	25910468	+	1	NA	NA	NA	-23184	NM_001277318	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.025000	0.437811	
mm_42450.1	chr5	115434952	115435152	+	1	NA	NA	NA	5367	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.020000	0.562189	
mm_143492.1	chr17	71455577	71455777	-	1	NA	NA	NA	19666	NM_028887	74355	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0.005000	0.348259	
mm_4537.1	chr1	176779126	176779326	+	1	NA	NA	NA	-6803	NR_029775	723921		NR_029775	ENSMUSG00000065573	Mir350	Mirn350|mir-350|mmu-mir-350	microRNA 350	ncRNA	0.000000	0.422886	
mm_100183.1	chr11	116657012	116657212	+	1	NA	NA	NA	4	NM_001163318	100038570	Mm.390349	NM_001163318	ENSMUSG00000075410	Prcd	Gm11744|OTTMUSG00000003947	progressive rod cone degeneration protein	protein-coding	0.025000	0.557214	
mm_37229.1	chr4	117964630	117964830	-	1	NA	NA	NA	-34967	NM_001284192	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.025000	0.537313	
mm_143321.1	chr17	66345321	66345521	-	1	NA	NA	NA	104329	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.015000	0.373134	-53(GCCTTTATGCAC,+,0.00)
mm_123038.1	chr14	55578732	55578932	-	1	NA	NA	NA	338	NM_011189	19186	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0.015000	0.587065	
mm_133662.1	chr16	91867823	91868023	+	1	NA	NA	NA	63707	NM_138597	28080	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.015000	0.477612	
mm_11577.1	chr2	32916549	32916749	+	1	NA	NA	NA	40515	NM_146119	227737	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.000000	0.328358	
mm_1728.1	chr1	75381541	75381741	+	1	NA	NA	NA	-473	NM_001085371	11790	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0.055000	0.621891	
mm_76380.1	chr8	84838557	84838757	-	1	NA	NA	NA	2008	NM_001297607	19358	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.015000	0.606965	
mm_169273.1	chr13	8937888	8938088	+	1	NA	NA	NA	-14875	NM_177197	320581	Mm.313743	NM_177197	ENSMUSG00000033520	Idi2	4833405L16Rik|IPPI2	isopentenyl-diphosphate delta isomerase 2	protein-coding	0.020000	0.537313	-37(CCCTTTATAAGC,+,0.00),-37(CCCTTTATAAGC,-,0.00),-35(CTTTATAAGCGC,+,0.00)
mm_58362.1	chr6	148444197	148444397	-	1	NA	NA	NA	55	NM_001347518	387314	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0.155000	0.791045	
mm_30353.1	chr3	151762364	151762564	-	1	NA	NA	NA	427	NM_031367	15061	Mm.219544	NM_031367	ENSMUSG00000039146	Ifi44l	H-28|H28|H28-1|NS1178	interferon-induced protein 44 like	protein-coding	0.000000	0.398010	-13(GGTTTTTAAAGG,-,0.00),-12(GTTTTTAAAGGG,+,0.00),-12(GTTTTTAAAGGG,-,0.00)
mm_112317.1	chr12	114991479	114991679	-	1	NA	NA	NA	-477885	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.005000	0.437811	-33(GTTTATATAGGG,+,0.00)
mm_76098.1	chr8	80292178	80292378	-	1	NA	NA	NA	-201767	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.005000	0.477612	
mm_146326.1	chr18	80707179	80707379	+	1	NA	NA	NA	894	NM_001164111	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.025000	0.482587	
mm_130911.1	chr15	102524517	102524717	-	1	NA	NA	NA	4	NM_018787	54615	Mm.445915	NM_018787	ENSMUSG00000023052	Npff	-	neuropeptide FF-amide peptide precursor	protein-coding	0.010000	0.587065	
mm_119394.1	chr14	41137744	41137944	+	1	NA	NA	NA	6056	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.005000	0.462687	-42(CTTCTTATGGGC,+,0.00)
mm_153782.1	chr19	45783702	45783902	-	1	NA	NA	NA	-511	NM_023799	76055	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	2810009A20Rik|4833427O07Rik|5830447M11Rik|AA408215|Hy5|Ncoat|OGA|mKIAA0679	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0.065000	0.641791	
mm_110803.1	chr12	72212317	72212517	-	1	NA	NA	NA	23329	NR_104446	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.020000	0.492537	
mm_169611.1	chr15	37344644	37344844	+	1	NA	NA	NA	-80810	NM_029113	74892	Mm.107630	NM_029113	ENSMUSG00000022288	4930447A16Rik	-	RIKEN cDNA 4930447A16 gene	protein-coding	0.040000	0.527363	
mm_48890.1	chr5	151368383	151368583	-	1	NA	NA	NA	-192	NR_045700	625175	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0.115000	0.631841	
mm_85448.1	chr9	104299990	104300190	-	1	NA	NA	NA	-37160	NM_001163026	235567	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.010000	0.507463	
mm_157874.1	chrX	75578118	75578318	-	1	NA	NA	NA	13	NM_175122	67790	Mm.45148	NM_175122	ENSMUSG00000031202	Rab39b	6330580M05Rik	RAB39B, member RAS oncogene family	protein-coding	0.050000	0.547264	
mm_74418.1	chr8	3625181	3625381	-	1	NA	NA	NA	1	NM_008790	18545	Mm.440882	NM_008790	ENSMUSG00000004630	Pcp2	L7|Pcp-2	Purkinje cell protein 2 (L7)	protein-coding	0.000000	0.497512	-34(GAGTATAAGAGC,-,0.00)
mm_171313.1	chr3	95357009	95357209	-	1	NA	NA	NA	93	NM_001163641	84505	Mm.490259	NM_018877	ENSMUSG00000015697	Setdb1	AU022152|ESET|KMT1E|mKIAA0067	SET domain, bifurcated 1	protein-coding	0.070000	0.671642	
mm_54320.1	chr6	30302517	30302717	-	1	NA	NA	NA	1922	NM_009459	22214	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0.005000	0.348259	
mm_48496.1	chr5	142794651	142794851	-	1	NA	NA	NA	22636	NM_178242	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.030000	0.621891	
mm_45358.1	chr5	65975568	65975768	-	1	NA	NA	NA	8544	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.000000	0.442786	
mm_25867.1	chr3	129901325	129901525	+	1	NA	NA	NA	10	NM_009811	12368	Mm.281379	NM_009811	ENSMUSG00000027997	Casp6	CASP-6|Mch2	caspase 6	protein-coding	0.075000	0.701493	
mm_6906.1	chr1	84837735	84837935	-	1	NA	NA	NA	1469	NM_133975	14897	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.040000	0.606965	
mm_99626.1	chr11	105091772	105091972	+	1	NA	NA	NA	-347	NM_001081046	70894	Mm.87320	NM_001081046	ENSMUSG00000020690	Efcab3	4921510J17Rik	EF-hand calcium binding domain 3	protein-coding	0.005000	0.437811	
mm_113577.1	chr13	40734034	40734234	+	1	NA	NA	NA	-311	NM_011547	21418	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.040000	0.552239	-34(AGGTATAAAGGC,-,0.00)
mm_48528.1	chr5	142903618	142903818	-	1	NA	NA	NA	3036	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.025000	0.308458	
mm_154130.1	chr19	57314635	57314835	-	1	NA	NA	NA	40775	NR_045319	78120	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	0.105000	0.726368	
mm_15441.1	chr2	157366936	157367136	+	1	NA	NA	NA	-558	NM_026968	69161	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	0.025000	0.467662	
mm_105775.1	chr11	109721661	109721861	-	1	NA	NA	NA	495	NM_153782	208659	Mm.208662	NM_153782	ENSMUSG00000020614	Fam20a	AI606893	family with sequence similarity 20, member A	protein-coding	0.055000	0.651741	
mm_86663.1	chr10	17919181	17919381	+	1	NA	NA	NA	28786	NM_001033432	380629	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.000000	0.502488	
mm_11132.1	chr2	28446755	28446955	+	1	NA	NA	NA	-1086	NM_001005420	241289	Mm.330095	NM_001005420	ENSMUSG00000035829	Ppp1r26	Gm347|Kiaa0649|mKIAA0649	protein phosphatase 1, regulatory subunit 26	protein-coding	0.160000	0.815920	
mm_6657.1	chr1	80033558	80033758	-	1	NA	NA	NA	-174993	NM_009255	20720	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	0.020000	0.437811	
mm_65478.1	chr7	25539824	25540024	-	1	NA	NA	NA	80	NM_001113368	26367	Mm.439731	NM_007543	ENSMUSG00000054385	Ceacam2	AI267129|Bgp2|Ceacam2-L	carcinoembryonic antigen-related cell adhesion molecule 2	protein-coding	0.010000	0.502488	
mm_131482.1	chr16	17208516	17208716	+	1	NA	NA	NA	481	NM_001033338	239731	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	0.085000	0.661692	
mm_51613.1	chr6	85076273	85076473	+	1	NA	NA	NA	232	NR_002702	108176	Mm.431982	NR_002702		Npm3-ps1	-	nucleoplasmin 3, pseudogene 1	pseudo	0.060000	0.582090	
mm_105243.1	chr11	102320172	102320372	-	1	NA	NA	NA	-1176	NM_011551	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.055000	0.517413	
mm_107181.1	chr12	24989663	24989863	+	1	NA	NA	NA	14831	NM_001081378	77480	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	0.015000	0.467662	
mm_54605.1	chr6	38319652	38319852	-	1	NA	NA	NA	-20493	NM_172467	209032	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	0.015000	0.452736	
mm_45866.1	chr5	87929944	87930144	-	1	NA	NA	NA	4411	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.010000	0.477612	
mm_158125.1	chrX	102515079	102515279	-	1	NA	NA	NA	-10021	NM_027382	70315	Mm.328128	NM_027382	ENSMUSG00000067567	Hdac8	2610007D20Rik	histone deacetylase 8	protein-coding	0.010000	0.507463	
mm_43341.1	chr5	135106800	135107000	+	1	NA	NA	NA	9	NM_021455	58805	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	0.095000	0.631841	
mm_126102.1	chr15	78244877	78245077	+	1	NA	NA	NA	166	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.010000	0.606965	
mm_42854.1	chr5	122210189	122210389	+	1	NA	NA	NA	2	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.015000	0.587065	
mm_159795.1	chr5	110703606	110703806	-	1	NA	NA	NA	-37565	NR_105993	102466216		NR_105993	ENSMUSG00000099284	Mir7026	Gm27988|mmu-mir-7026	microRNA 7026	ncRNA	0.010000	0.432836	
mm_103316.1	chr11	73176468	73176668	-	1	NA	NA	NA	440	NM_001168470	66048	Mm.73608	NM_025318	ENSMUSG00000047260	Emc6	0610009E20Rik|0610025L18Rik|Tmem93	ER membrane protein complex subunit 6	protein-coding	0.080000	0.611940	
mm_77518.1	chr8	122895112	122895312	-	1	NA	NA	NA	46838	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.040000	0.537313	
mm_57070.1	chr6	122577916	122578116	-	1	NA	NA	NA	24207	NM_009645	11628	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.005000	0.388060	
mm_77275.1	chr8	116616248	116616448	-	1	NA	NA	NA	111333	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.000000	0.303483	
mm_68904.1	chr7	126456439	126456639	-	1	NA	NA	NA	6534	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.020000	0.562189	
mm_13753.1	chr2	118126495	118126695	+	1	NA	NA	NA	14719	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.010000	0.333333	27(GTGTCTAAAAAG,-,0.00)
mm_149692.1	chr19	21272160	21272360	+	1	NA	NA	NA	-18	NM_009551	22682	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.155000	0.731343	
mm_162664.1	chr10	5593446	5593646	-	1	NA	NA	NA	-182	NM_026793	68632	Mm.338242	NM_026793	ENSMUSG00000046916	Myct1	1110020B04Rik|AI225941|AI642973|Mtmc1	myc target 1	protein-coding	0.010000	0.487562	
mm_122259.1	chr14	34252478	34252678	-	1	NA	NA	NA	32532	NM_181529	319508	Mm.228006	NM_176931	ENSMUSG00000041479	Syt15	CHR10SYT|E230025K04Rik|sytXV	synaptotagmin XV	protein-coding	0.015000	0.442786	
mm_140876.1	chr17	23815156	23815356	-	1	NA	NA	NA	12069	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.025000	0.587065	
mm_83787.1	chr9	52168654	52168854	-	1	NA	NA	NA	-643	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.145000	0.766169	
mm_120954.1	chr14	77156678	77156878	+	1	NA	NA	NA	15	NM_172813	239188	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	0.140000	0.746269	
mm_124777.1	chr15	7194969	7195169	+	1	NA	NA	NA	54527	NM_013584	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.010000	0.447761	
mm_17102.1	chr2	23571975	23572175	-	1	NA	NA	NA	29	NM_029773	76857	Mm.276415	NM_029773	ENSMUSG00000026771	Spopl	4921517N04Rik|AU014935|BB233739|E430033K04Rik	speckle-type POZ protein-like	protein-coding	0.090000	0.611940	
mm_97310.1	chr11	76679876	76680076	+	1	NA	NA	NA	103	NM_177709	237858	Mm.127006	NM_177709	ENSMUSG00000046275	Tusc5	C130069F04Rik|DSPB1|Lost1	tumor suppressor candidate 5	protein-coding	0.035000	0.557214	
mm_89469.1	chr10	93488670	93488870	+	1	NA	NA	NA	2	NM_010401	15109	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	0.015000	0.472637	-52(CCCTAAAGAGGG,+,0.00),-33(GTGTTTATAAGC,-,0.00)
mm_131686.1	chr16	20678320	20678520	+	1	NA	NA	NA	5693	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.010000	0.601990	
mm_166934.1	chr7	35333703	35333903	-	1	NA	NA	NA	-434	NM_027897	52428	Mm.286600	NM_027897	ENSMUSG00000030494	Rhpn2	1300002E07Rik|AA536890|C85860|D7Ertd784e	rhophilin, Rho GTPase binding protein 2	protein-coding	0.050000	0.582090	
mm_61112.1	chr7	54835482	54835682	+	1	NA	NA	NA	337	NM_178705	233271	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	0.045000	0.597015	-89(CCCTAAAGAGTC,+,0.00)
mm_78406.1	chr9	29442281	29442481	+	1	NA	NA	NA	520748	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.015000	0.452736	
mm_20247.1	chr2	126499637	126499837	-	1	NA	NA	NA	-8184	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	0.035000	0.472637	
mm_16286.1	chr2	174110267	174110467	+	1	NA	NA	NA	16	NM_213733	228961	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	0.155000	0.855721	
mm_64113.1	chr7	141078076	141078276	+	1	NA	NA	NA	-53	NM_001162924	56460	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0.060000	0.636816	
mm_120832.1	chr14	75176715	75176915	+	1	NA	NA	NA	40390	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.000000	0.452736	-54(GTCCTTATAAAG,-,0.00),-52(CCTTATAAAGAC,+,0.00)
mm_37381.1	chr4	120975452	120975652	-	1	NA	NA	NA	-2230	NR_105982	102465614		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.015000	0.447761	
mm_15952.1	chr2	165977051	165977251	+	1	NA	NA	NA	-15486	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.015000	0.517413	
mm_133531.1	chr16	91011251	91011451	+	1	NA	NA	NA	-43	NM_001164483	104015	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.115000	0.746269	
mm_170068.1	chr17	32051735	32051935	+	1	NA	NA	NA	3550	NM_001163734	72462	Mm.102761	NM_028244	ENSMUSG00000058392	Rrp1b	2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179	ribosomal RNA processing 1 homolog B (S. cerevisiae)	protein-coding	0.020000	0.512438	26(CCTCTTATACTC,+,0.00)
mm_35814.1	chr4	46991422	46991622	-	1	NA	NA	NA	192	NM_001081141	242425	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	0.185000	0.810945	
mm_70129.1	chr7	143230176	143230376	-	1	NA	NA	NA	66271	NR_001461	63830	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.000000	0.353234	
mm_67867.1	chr7	99158955	99159155	-	1	NA	NA	NA	-17911	NM_178635	78610	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.010000	0.527363	
mm_130400.1	chr15	97976014	97976214	-	1	NA	NA	NA	11885	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.030000	0.512438	
mm_158343.1	chrX	134162857	134163057	-	1	NA	NA	NA	-1029	NM_183319	331524	Mm.235055	NM_183319	ENSMUSG00000031258	Xkrx	A630026F04	X-linked Kx blood group related, X-linked	protein-coding	0.030000	0.572139	
mm_33408.1	chr4	129848410	129848610	+	1	NA	NA	NA	27802	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.010000	0.383085	
mm_124961.1	chr15	13155145	13155345	+	1	NA	NA	NA	18430	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.000000	0.447761	
mm_53731.1	chr6	145121617	145121817	+	1	NA	NA	NA	-22	NM_008511	16970	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.015000	0.552239	
mm_71801.1	chr8	68276633	68276833	+	1	NA	NA	NA	205	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.060000	0.661692	
mm_169759.1	chr15	9357071	9357271	-	1	NA	NA	NA	21573	NM_144845	223337	Mm.422853	NM_144845	ENSMUSG00000049152	Ugt3a2	AI313915	UDP glycosyltransferases 3 family, polypeptide A2	protein-coding	0.035000	0.562189	
mm_107223.1	chr12	26470409	26470609	+	1	NA	NA	NA	1294	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.005000	0.393035	
mm_129509.1	chr15	79028722	79028922	-	1	NA	NA	NA	610	NM_008197	14958	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	0.070000	0.592040	
mm_12224.1	chr2	67970562	67970762	+	1	NA	NA	NA	-134010	NM_020283	26877	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	0.005000	0.427861	
mm_155855.1	chrX	101299113	101299313	+	1	NA	NA	NA	34	NM_172932	245537	Mm.121508	NM_172932	ENSMUSG00000031302	Nlgn3	A230085M13Rik|HNL3|NL3	neuroligin 3	protein-coding	0.095000	0.711443	
mm_1933.1	chr1	86110908	86111108	+	1	NA	NA	NA	962	NM_008311	15559	Mm.439747	NM_008311	ENSMUSG00000026228	Htr2b	5-HT2B|AJ012488|AV377389	5-hydroxytryptamine (serotonin) receptor 2B	protein-coding	0.015000	0.442786	
mm_122211.1	chr14	32124307	32124507	-	1	NA	NA	NA	-17616	NM_020597	17695	Mm.2540	NM_020597	ENSMUSG00000021907	Msmb	PIP|PSP94|beta-MSP	beta-microseminoprotein	protein-coding	0.010000	0.532338	
mm_105607.1	chr11	106782760	106782960	-	1	NA	NA	NA	-101	NR_037224	100526469		NR_037224	ENSMUSG00000093273	Mir3064	mir-3064|mmu-mir-3064	microRNA 3064	ncRNA	0.005000	0.363184	
mm_59827.1	chr7	29289233	29289433	+	1	NA	NA	NA	13	NM_026731	68458	Mm.2343	NM_026731	ENSMUSG00000037166	Ppp1r14a	1110001M11Rik|Cpi17	protein phosphatase 1, regulatory (inhibitor) subunit 14A	protein-coding	0.120000	0.761194	
mm_81753.1	chr9	113956128	113956328	+	1	NA	NA	NA	25294	NM_013699	22221	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0.020000	0.373134	
mm_38235.1	chr4	136172221	136172421	-	1	NA	NA	NA	47	NM_177733	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.050000	0.442786	
mm_81436.1	chr9	109095484	109095684	+	1	NA	NA	NA	148	NM_172775	235611	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.130000	0.731343	
mm_102297.1	chr11	55461044	55461244	-	1	NA	NA	NA	-6	NM_009720	11927	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.100000	0.686567	
mm_128883.1	chr15	73140074	73140274	-	1	NA	NA	NA	44773	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.005000	0.482587	-42(CCTTTAATGTTC,+,0.00)
mm_58540.1	chr7	4519301	4519501	+	1	NA	NA	NA	3042	NM_009406	21954	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0.010000	0.577114	
mm_84699.1	chr9	72510842	72511042	-	1	NA	NA	NA	-18983	NM_009359	21778	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	0.010000	0.368159	
mm_60507.1	chr7	44479439	44479639	+	1	NA	NA	NA	-4978	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.437811	
mm_156716.1	chrX	159697247	159697447	+	1	NA	NA	NA	-11254	NM_021389	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.010000	0.517413	-64(GCTTTTTTAAGG,-,0.00),-62(TTTTTTAAGGAG,+,0.00)
mm_154060.1	chr19	55127112	55127312	-	1	NA	NA	NA	-27765	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.015000	0.522388	
mm_120849.1	chr14	75210397	75210597	+	1	NA	NA	NA	-31790	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.030000	0.502488	
mm_151334.1	chr19	55894511	55894711	+	1	NA	NA	NA	-710	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.020000	0.402985	-67(GGCTTTTAAAGT,-,0.00),-66(GCTTTTAAAGTC,+,0.00)
mm_63553.1	chr7	128076071	128076271	+	1	NA	NA	NA	13531	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.010000	0.412935	
mm_88042.1	chr10	67538091	67538291	+	1	NA	NA	NA	261	NM_001347458	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.030000	0.522388	
mm_91750.1	chr10	49783600	49783800	-	1	NA	NA	NA	5054	NM_010349	14806	Mm.332838	NM_010349	ENSMUSG00000056073	Grik2	AW124492|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.025000	0.487562	
mm_75422.1	chr8	46828387	46828587	-	1	NA	NA	NA	88742	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.010000	0.417910	
mm_146061.1	chr18	69684055	69684255	+	1	NA	NA	NA	-241404	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.035000	0.437811	
mm_132261.1	chr16	32756013	32756213	+	1	NA	NA	NA	20227	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.005000	0.467662	
mm_16777.1	chr2	9887637	9887837	-	1	NA	NA	NA	1803	NR_040511	77682	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA	0.020000	0.552239	
mm_30303.1	chr3	149219329	149219529	-	1	NA	NA	NA	-55308	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.020000	0.452736	
mm_100601.1	chr11	121237153	121237353	+	1	NA	NA	NA	17	NM_026272	67608	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	0.060000	0.597015	
mm_54346.1	chr6	30804787	30804987	-	1	NA	NA	NA	63588	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.577114	
mm_25998.1	chr3	134259247	134259447	+	1	NA	NA	NA	-18764	NR_035435	100316832		NR_035435	ENSMUSG00000084564	Mir1895	Mirn1895|mmu-mir-1895	microRNA 1895	ncRNA	0.000000	0.407960	
mm_22420.1	chr2	181581806	181582006	-	1	NA	NA	NA	67	NM_026765	68556	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	0.115000	0.726368	
mm_113537.1	chr13	37853371	37853571	+	1	NA	NA	NA	26078	NM_001039188	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.005000	0.328358	
mm_53605.1	chr6	138156610	138156810	+	1	NA	NA	NA	15116	NM_001347489	56615	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.005000	0.293532	
mm_4693.1	chr1	180731741	180731941	+	1	NA	NA	NA	5798	NM_133225	170760	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.010000	0.442786	
mm_95002.1	chr11	31873008	31873208	+	1	NA	NA	NA	2168	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.015000	0.557214	
mm_66965.1	chr7	62464427	62464627	-	1	NA	NA	NA	-17	NM_013788	27412	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	0.055000	0.562189	
mm_52644.1	chr6	117178864	117179064	+	1	NA	NA	NA	10429	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.010000	0.587065	
mm_22829.1	chr3	27242689	27242889	+	1	NA	NA	NA	59785	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.015000	0.333333	
mm_113140.1	chr13	24638586	24638786	+	1	NA	NA	NA	38	NM_029679	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.140000	0.771144	
mm_75971.1	chr8	72002528	72002728	-	1	NA	NA	NA	6998	NM_024444	72054	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	0.005000	0.552239	
mm_46273.1	chr5	100037553	100037753	-	1	NA	NA	NA	1569	NM_016690	50926	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	0.000000	0.432836	-17(AGCTTTAAAGGG,-,0.00),-16(GCTTTAAAGGGG,+,0.00),2(CCCCCTAAAAAG,-,0.00)
mm_99648.1	chr11	105589641	105589841	+	1	NA	NA	NA	-245	NM_181071	77097	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.185000	0.835821	
mm_144765.1	chr18	35771826	35772026	+	1	NA	NA	NA	367	NM_019912	56550	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0.110000	0.726368	
mm_45558.1	chr5	73182548	73182748	-	1	NA	NA	NA	73970	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.025000	0.313433	
mm_145742.1	chr18	64288927	64289127	+	1	NA	NA	NA	-11847	NR_045366	73588	Mm.65475	NR_045366	ENSMUSG00000086128	St8sia3os	1700091E21Rik	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3, opposite strand	ncRNA	0.010000	0.427861	
mm_59236.1	chr7	24778077	24778277	+	1	NA	NA	NA	973	NM_007675	26366	Mm.30300	NM_007675	ENSMUSG00000054169	Ceacam10	Bgp3|Cea10	carcinoembryonic antigen-related cell adhesion molecule 10	protein-coding	0.030000	0.482587	
mm_97099.1	chr11	73279674	73279874	+	1	NA	NA	NA	12154	NM_145099	246788	Mm.75196	NM_145099	ENSMUSG00000043029	Trpv3	1110036I10Rik|AI644701|Nh|VRL3	transient receptor potential cation channel, subfamily V, member 3	protein-coding	0.035000	0.542289	
mm_118665.1	chr14	21848350	21848550	+	1	NA	NA	NA	460	NM_026965	69156	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0.040000	0.636816	
mm_7210.1	chr1	93083873	93084073	-	1	NA	NA	NA	-1493	NM_001294150	16560	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.015000	0.402985	
mm_90302.1	chr10	126371884	126372084	+	1	NA	NA	NA	338407	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	0.015000	0.432836	
mm_27036.1	chr3	26331407	26331607	-	1	NA	NA	NA	402	NM_138666	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.090000	0.686567	
mm_64762.1	chr7	4912312	4912512	-	1	NA	NA	NA	-2805	NM_170759	232816	Mm.27442	NM_170759	ENSMUSG00000074406	Zfp628	Zec|Znf628	zinc finger protein 628	protein-coding	0.010000	0.512438	
mm_172522.1	chr7	81829319	81829519	-	1	NA	NA	NA	12	NM_146193	83962	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	0.165000	0.815920	
mm_50161.1	chr6	41547359	41547559	+	1	NA	NA	NA	25683	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.457711	8(GACTATAAGAGG,-,0.00)
mm_74281.1	chr8	125584535	125584735	+	1	NA	NA	NA	-3	NR_015535	75930	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	0.015000	0.522388	
mm_33748.1	chr4	134246834	134247034	+	1	NA	NA	NA	-1343	NM_024215	68040	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	0.015000	0.582090	
mm_145540.1	chr18	60807804	60808004	+	1	NA	NA	NA	4055	NM_010545	16149	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	0.025000	0.582090	
mm_38296.1	chr4	136892995	136893195	-	1	NA	NA	NA	-181	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.005000	0.517413	
mm_55552.1	chr6	71262390	71262590	-	1	NA	NA	NA	-209	NM_009762	12180	Mm.234274	NM_009762	ENSMUSG00000055027	Smyd1	4632404M21Rik|Bop|C78565|Zmynd18	SET and MYND domain containing 1	protein-coding	0.010000	0.452736	
mm_150938.1	chr19	46305928	46306128	+	1	NA	NA	NA	98	NM_001177370	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.050000	0.587065	
mm_6623.1	chr1	77488599	77488799	-	1	NA	NA	NA	8069	NR_105770	102465180		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.010000	0.303483	
mm_166752.1	chr6	125350460	125350660	-	1	NA	NA	NA	837	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.025000	0.552239	-47(GCCTAGATAAAG,-,0.00)
mm_120666.1	chr14	70546381	70546581	+	1	NA	NA	NA	1230	NM_180588	72549	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	0.025000	0.557214	
mm_86120.1	chr9	116090073	116090273	-	1	NA	NA	NA	85190	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.040000	0.537313	
mm_6377.1	chr1	72578872	72579072	-	1	NA	NA	NA	-4279	NM_018817	54380	Mm.274232	NM_018817	ENSMUSG00000039354	Smarcal1	6030401P21Rik|AI851716|Mharp	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	protein-coding	0.020000	0.467662	-39(GCCTTGAAAAAG,-,0.00)
mm_167587.1	chr9	46240724	46240924	+	1	NA	NA	NA	-20	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.005000	0.587065	
mm_57864.1	chr6	129622508	129622708	-	1	NA	NA	NA	75	NM_033078	27007	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	0.010000	0.353234	
mm_143148.1	chr17	57222739	57222939	-	1	NA	NA	NA	5297	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.010000	0.537313	
mm_123729.1	chr14	70167916	70168116	-	1	NA	NA	NA	-8514	NM_001004155	268759	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	0.030000	0.651741	
mm_53432.1	chr6	134056062	134056262	+	1	NA	NA	NA	20462	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.020000	0.383085	
mm_55458.1	chr6	67376200	67376400	-	1	NA	NA	NA	-163	NM_008354	16162	Mm.188337	NM_008354	ENSMUSG00000018341	Il12rb2	A930027I18Rik|IL-12RB2|Ifnm	interleukin 12 receptor, beta 2	protein-coding	0.045000	0.532338	
mm_147048.1	chr18	34931806	34932006	-	1	NA	NA	NA	97	NM_144866	225363	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.095000	0.706468	
mm_83611.1	chr9	48649515	48649715	-	1	NA	NA	NA	-44492	NM_010924	18113	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0.030000	0.572139	
mm_29145.1	chr3	105932528	105932728	-	1	NA	NA	NA	36	NM_001033780	433638	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	0.015000	0.432836	
mm_153337.1	chr19	38224612	38224812	-	1	NA	NA	NA	-580	NM_001081075	70567	Mm.30607	NM_001081075	ENSMUSG00000054237	Fra10ac1	5730455O13Rik|AI448293	FRA10AC1 homolog (human)	protein-coding	0.025000	0.402985	
mm_24567.1	chr3	93444181	93444381	+	1	NA	NA	NA	1951	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.085000	0.626866	
mm_160382.1	chr8	43576597	43576797	-	1	NA	NA	NA	10	NM_010085	13525	Mm.334510	NM_010085	ENSMUSG00000048516	Adam26a	Adam26|Dtgn4	a disintegrin and metallopeptidase domain 26A (testase 3)	protein-coding	0.000000	0.398010	
mm_58238.1	chr6	145047510	145047710	-	1	NA	NA	NA	1202	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.035000	0.512438	-74(CTTTATAAATGG,-,0.00)
mm_5481.1	chr1	36709841	36710041	-	1	NA	NA	NA	-16	NM_146107	226977	Mm.28521	NM_146107	ENSMUSG00000037351	Actr1b	2310066K23Rik|AA960180|AI851923|Arp1b	ARP1 actin-related protein 1B, centractin beta	protein-coding	0.115000	0.711443	
mm_114715.1	chr13	83583006	83583206	+	1	NA	NA	NA	9499	NM_001347569	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.005000	0.228856	
mm_90129.1	chr10	117710817	117711017	+	1	NA	NA	NA	-159	NM_001288586	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.085000	0.611940	
mm_171491.1	chr4	146156672	146156872	+	1	NA	NA	NA	-55	NM_001177546	667666	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164|OTTMUSG00000010694	zinc finger protein 600	protein-coding	0.025000	0.502488	
mm_150166.1	chr19	32485663	32485863	+	1	NA	NA	NA	-6	NM_010799	17330	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0.120000	0.676617	
mm_81167.1	chr9	107299817	107300017	+	1	NA	NA	NA	3258	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.015000	0.517413	-95(TGCTTTAAAAAA,-,0.00)
mm_166589.1	chr6	55336104	55336304	+	1	NA	NA	NA	-95	NM_007472	11826	Mm.18625	NM_007472	ENSMUSG00000004655	Aqp1	CHIP28	aquaporin 1	protein-coding	0.025000	0.621891	-32(GCCTATTAGAGC,-,0.00)
mm_101377.1	chr11	23770891	23771091	-	1	NA	NA	NA	-21	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.105000	0.706468	
mm_12272.1	chr2	68979559	68979759	+	1	NA	NA	NA	118218	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.005000	0.507463	
mm_53149.1	chr6	125265376	125265576	+	1	NA	NA	NA	-49	NR_015527	73870	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.035000	0.522388	
mm_96063.1	chr11	59662407	59662607	+	1	NA	NA	NA	12	NM_012027	26936	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	0.165000	0.796020	
mm_62136.1	chr7	97083306	97083506	+	1	NA	NA	NA	1655	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.030000	0.507463	
mm_14572.1	chr2	135364678	135364878	+	1	NA	NA	NA	-41052	NR_039540	100628568		NR_039540	ENSMUSG00000092830	Mir3963	mmu-mir-3963|mu-mir-3963	microRNA 3963	ncRNA	0.025000	0.477612	
mm_14111.1	chr2	125796761	125796961	+	1	NA	NA	NA	-13991	NM_177608	70354	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.010000	0.402985	
mm_58589.1	chr7	5014346	5014546	+	1	NA	NA	NA	-193	NM_011813	23877	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	0.060000	0.656716	
mm_115659.1	chr13	12461006	12461206	-	1	NA	NA	NA	632	NM_001291060	56048	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.050000	0.517413	
mm_126817.1	chr15	88710054	88710254	+	1	NA	NA	NA	24065	NM_001033274	223770	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	0.010000	0.492537	
mm_102678.1	chr11	65261644	65261844	-	1	NA	NA	NA	8245	NM_145136	214384	Mm.32257	NM_145136	ENSMUSG00000020542	Myocd	BSAC2A|Srfcp	myocardin	protein-coding	0.015000	0.472637	
mm_90052.1	chr10	116143847	116144047	+	1	NA	NA	NA	49	NM_001161837	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	0.040000	0.527363	
mm_57642.1	chr6	128424809	128425009	-	1	NA	NA	NA	1	NM_133927	101142	Mm.31345	NM_133927	ENSMUSG00000001518	Itfg2	2700050P07Rik|AI646725	integrin alpha FG-GAP repeat containing 2	protein-coding	0.065000	0.636816	
mm_163009.1	chr11	40451726	40451926	+	1	NA	NA	NA	240856	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.000000	0.308458	
mm_99949.1	chr11	111275966	111276166	+	1	NA	NA	NA	209902	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.025000	0.373134	
mm_9619.1	chr1	176734111	176734311	-	1	NA	NA	NA	38212	NR_029775	723921		NR_029775	ENSMUSG00000065573	Mir350	Mirn350|mir-350|mmu-mir-350	microRNA 350	ncRNA	0.005000	0.308458	
mm_23786.1	chr3	79345271	79345471	+	1	NA	NA	NA	-5	NM_001142953	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.030000	0.517413	
mm_22588.1	chr3	13472799	13472999	+	1	NA	NA	NA	1244	NM_001163328	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.110000	0.651741	
mm_102701.1	chr11	66168374	66168574	-	1	NA	NA	NA	77	NM_001099633	237806	Mm.264210	NM_001099633	ENSMUSG00000056752	Dnah9	9030022M04|A230091C01|C230051G16|D11Ertd686e|Dnahc9|mKIAA0357	dynein, axonemal, heavy chain 9	protein-coding	0.065000	0.651741	
mm_115196.1	chr13	108917999	108918199	+	1	NA	NA	NA	263922	NM_011056	238871	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	0.005000	0.373134	
mm_126230.1	chr15	78947823	78948023	+	1	NA	NA	NA	199	NM_001039155	110253	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.060000	0.567164	
mm_110378.1	chr12	40205856	40206056	-	1	NA	NA	NA	-6641	NM_001033437	380755	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	0.000000	0.437811	
mm_129571.1	chr15	79687650	79687850	-	1	NA	NA	NA	122	NM_028792	74158	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	0.120000	0.761194	
mm_136277.1	chr16	91063758	91063958	-	1	NA	NA	NA	5287	NM_001163695	74387	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.020000	0.447761	
mm_25941.1	chr3	131489645	131489845	+	1	NA	NA	NA	-75023	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.040000	0.582090	
mm_133707.1	chr16	93153216	93153416	+	1	NA	NA	NA	199873	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.015000	0.567164	
mm_95100.1	chr11	34047150	34047350	+	1	NA	NA	NA	49	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.010000	0.527363	
mm_62422.1	chr7	101321764	101321964	+	1	NA	NA	NA	545	NM_019990	56018	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	0.060000	0.661692	
mm_117486.1	chr13	78183012	78183212	-	1	NA	NA	NA	13337	NM_001347538	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.010000	0.462687	
mm_134290.1	chr16	14218848	14219048	-	1	NA	NA	NA	55673	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.015000	0.512438	
mm_141050.1	chr17	25565920	25566120	-	1	NA	NA	NA	4666	NM_011447	20681	Mm.258220	NM_011447	ENSMUSG00000024176	Sox8	-	SRY (sex determining region Y)-box 8	protein-coding	0.020000	0.353234	
mm_45912.1	chr5	89435483	89435683	-	1	NA	NA	NA	22315	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.000000	0.437811	
mm_12500.1	chr2	71868410	71868610	+	1	NA	NA	NA	-4714	NM_172665	228026	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.005000	0.487562	
mm_93864.1	chr10	122986384	122986584	-	1	NA	NA	NA	-760	NR_029527	387251		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.145000	0.716418	
mm_497.1	chr1	36939903	36940103	+	1	NA	NA	NA	-476	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.110000	0.671642	
mm_131481.1	chr16	17200845	17201045	+	1	NA	NA	NA	547	NM_009456	22195	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0.075000	0.631841	
mm_10865.1	chr2	25080414	25080614	+	1	NA	NA	NA	191	NM_028093	72090	Mm.33403	NM_028093	ENSMUSG00000036813	Entpd8	-	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding	0.010000	0.597015	
mm_99457.1	chr11	102434651	102434851	+	1	NA	NA	NA	4429	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.010000	0.537313	
mm_68315.1	chr7	105810921	105811121	-	1	NA	NA	NA	66	NM_025301	27397	Mm.44225	NM_025301	ENSMUSG00000030879	Mrpl17	MRP-L26|Rpml26	mitochondrial ribosomal protein L17	protein-coding	0.110000	0.701493	
mm_148900.1	chr19	6910415	6910615	+	1	NA	NA	NA	817	NM_026306	67674	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.075000	0.646766	
mm_66600.1	chr7	45458442	45458642	-	1	NA	NA	NA	1344	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.015000	0.517413	
mm_101244.1	chr11	20741260	20741460	-	1	NA	NA	NA	196	NM_001290545	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.125000	0.761194	
mm_157930.1	chrX	79918370	79918570	-	1	NA	NA	NA	-247035	NM_028025	71967	Mm.379207	NM_028025	ENSMUSG00000046942	Mageb16	2410003J06Rik	melanoma antigen family B, 16	protein-coding	0.030000	0.522388	
mm_101208.1	chr11	20062929	20063129	-	1	NA	NA	NA	49922	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.040000	0.522388	
mm_169595.1	chr15	31446728	31446928	-	1	NA	NA	NA	6861	NM_145852	252967	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.040000	0.502488	
mm_26794.1	chr3	9801496	9801696	-	1	NA	NA	NA	32083	NM_053182	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.000000	0.273632	
mm_59355.1	chr7	25680707	25680907	+	1	NA	NA	NA	-351	NM_172148	232987	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0.070000	0.661692	
mm_168432.1	chr1	134533888	134534088	+	1	NA	NA	NA	15694	NM_001145300	71001	Mm.158529	NM_183292	ENSMUSG00000046367	Mgat4e	4931440L10Rik	MGAT4 family, member E	protein-coding	0.035000	0.517413	-31(TTCTATAAAAGT,-,0.00)
mm_153043.1	chr19	32061387	32061587	-	1	NA	NA	NA	41653	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.005000	0.407960	
mm_134843.1	chr16	26526659	26526859	-	1	NA	NA	NA	12	NM_001101640	100043057	Mm.295917	NM_001101640	ENSMUSG00000091972	Tmem207	Gm540	transmembrane protein 207	protein-coding	0.025000	0.442786	
mm_50981.1	chr6	62119439	62119639	+	1	NA	NA	NA	-938729	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA	0.005000	0.422886	
mm_125308.1	chr15	37346400	37346600	+	1	NA	NA	NA	-79054	NM_029113	74892	Mm.107630	NM_029113	ENSMUSG00000022288	4930447A16Rik	-	RIKEN cDNA 4930447A16 gene	protein-coding	0.000000	0.363184	
mm_78353.1	chr9	25481529	25481729	+	1	NA	NA	NA	32	NM_026189	67484	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.155000	0.731343	
mm_164993.1	chr19	14243331	14243531	-	1	NA	NA	NA	195075	NR_003027	19862		NR_003027	ENSMUSG00000095132	Rnu6	-	U6 small nuclear RNA	snRNA	0.010000	0.378109	
mm_173173.1	chrX	49567419	49567619	-	1	NA	NA	NA	97069	NM_001081123	75404	Mm.44305	NM_001081123	ENSMUSG00000036198	Arhgap36	1100001E04Rik|rho-gap	Rho GTPase activating protein 36	protein-coding	0.020000	0.502488	
mm_28876.1	chr3	97755392	97755592	-	1	NA	NA	NA	12522	NR_110360	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.025000	0.502488	
mm_85868.1	chr9	110879418	110879618	-	1	NA	NA	NA	565	NM_146260	20776	Mm.390229	NM_146260	ENSMUSG00000049555	Tmie	5131400L21Rik|Mm.87012|sr	transmembrane inner ear	protein-coding	0.010000	0.592040	
mm_74399.1	chr8	3269513	3269713	-	1	NA	NA	NA	10004	NM_010568	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.010000	0.358209	
mm_18848.1	chr2	75633758	75633958	-	1	NA	NA	NA	-25401	NM_146130	229279	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.010000	0.497512	
mm_69631.1	chr7	137410833	137411033	-	1	NA	NA	NA	-177	NM_029886	77252	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.070000	0.587065	
mm_98544.1	chr11	95010185	95010385	+	1	NA	NA	NA	406	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.060000	0.597015	
mm_17555.1	chr2	30124393	30124593	-	1	NA	NA	NA	118	NM_178694	227693	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	0.105000	0.736318	
mm_115452.1	chr13	118714831	118715031	+	1	NA	NA	NA	232	NM_008002	14165	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	0.020000	0.557214	
mm_130123.1	chr15	89568169	89568369	-	1	NA	NA	NA	-57	NM_013455	11434	Mm.57	NM_013455	ENSMUSG00000022622	Acr	-	acrosin prepropeptide	protein-coding	0.010000	0.572139	
mm_162010.1	chr19	42752700	42752900	-	1	NA	NA	NA	-25	NM_029011	74580	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	0.040000	0.587065	
mm_155154.1	chrX	52913387	52913587	+	1	NA	NA	NA	1273	NM_001290546	70998	Mm.26870	NM_027642	ENSMUSG00000025626	Phf6	2700007B13Rik|4931428F02Rik|mKIAA1823	PHD finger protein 6	protein-coding	0.035000	0.383085	
mm_83913.1	chr9	56417938	56418138	-	1	NA	NA	NA	12	NM_172924	244895	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	0.105000	0.661692	
mm_149880.1	chr19	25237389	25237589	+	1	NA	NA	NA	287	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.075000	0.701493	-48(GCCTTTAGGGGC,+,0.00)
mm_69601.1	chr7	135716453	135716653	-	1	NA	NA	NA	-174	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.070000	0.696517	
mm_70624.1	chr8	13674408	13674608	+	1	NA	NA	NA	3079	NM_009025	19414	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.020000	0.502488	
mm_42279.1	chr5	114155393	114155593	+	1	NA	NA	NA	-10025	NM_133904	100705	Mm.81793	NM_133904	ENSMUSG00000042010	Acacb	AI597064|AW743042|Acc2|Accb	acetyl-Coenzyme A carboxylase beta	protein-coding	0.015000	0.577114	
mm_38860.1	chr4	149426311	149426511	-	1	NA	NA	NA	220	NM_022022	63958	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0.075000	0.736318	-32(TGCTTTTAGAGG,-,0.00),-31(GCTTTTAGAGGG,+,0.00)
mm_142844.1	chr17	51796295	51796495	-	1	NA	NA	NA	15659	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.005000	0.432836	
mm_50317.1	chr6	47920510	47920710	+	1	NA	NA	NA	42	NM_001145881	232784	Mm.196782	NM_145576	ENSMUSG00000052763	Zfp212	Znf212|mKIAA3011	Zinc finger protein 212	protein-coding	0.110000	0.666667	
mm_110067.1	chr12	21384385	21384585	-	1	NA	NA	NA	-10853	NM_009615	11491	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	0.010000	0.462687	
mm_142106.1	chr17	35835709	35835909	-	1	NA	NA	NA	2492	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.035000	0.552239	
mm_159774.1	chr5	103655570	103655770	-	1	NA	NA	NA	54	NM_028824	74218	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.105000	0.726368	
mm_52661.1	chr6	117900259	117900459	+	1	NA	NA	NA	19	NM_001166432	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.020000	0.527363	
mm_17193.1	chr2	25467742	25467942	-	1	NA	NA	NA	1907	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.015000	0.547264	
mm_73846.1	chr8	117595066	117595266	+	1	NA	NA	NA	76349	NM_028725	74032	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	0.010000	0.363184	
mm_29337.1	chr3	108200733	108200933	-	1	NA	NA	NA	1	NM_028061	72023	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	0.075000	0.676617	
mm_111388.1	chr12	87922342	87922542	-	1	NA	NA	NA	29608	NM_001177574	100039052	Mm.431321	NM_001177574		Gm2022	-	predicted pseudogene 2022	protein-coding	0.010000	0.487562	
mm_134058.1	chr16	6842024	6842224	-	1	NA	NA	NA	-227711	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.015000	0.407960	3(CTTCTTAAAGAC,+,0.00),19(GTGTTTAAAGAG,-,0.00)
mm_161486.1	chr15	84719821	84720021	+	1	NA	NA	NA	-131	NM_001164628	73167	Mm.128411	NM_028455	ENSMUSG00000078954	Arhgap8	3110043J09Rik	Rho GTPase activating protein 8	protein-coding	0.055000	0.626866	
mm_89304.1	chr10	87914432	87914632	+	1	NA	NA	NA	-52139	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.000000	0.278607	
mm_32340.1	chr4	104741527	104741727	+	1	NA	NA	NA	-24690	NM_133882	110382	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding	0.020000	0.482587	
mm_109235.1	chr12	108855247	108855447	+	1	NA	NA	NA	4218	NM_001012310	104910	Mm.202653	NM_001012310	ENSMUSG00000048856	Slc25a47	AI132487|AI876593|HDMCP	solute carrier family 25, member 47	protein-coding	0.035000	0.616915	
mm_124035.1	chr14	77032410	77032610	-	1	NA	NA	NA	4107	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding	0.020000	0.427861	19(GTATTTAAAAAG,-,0.00)
mm_56373.1	chr6	94124772	94124972	-	1	NA	NA	NA	112570	NR_130996	78178	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0.005000	0.363184	
mm_15329.1	chr2	155754907	155755107	+	1	NA	NA	NA	3790	NM_011171	19124	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	0.010000	0.527363	
mm_75813.1	chr8	70303025	70303225	-	1	NA	NA	NA	340	NM_021538	59042	Mm.28668	NM_021538	ENSMUSG00000055681	Cope	1110005D17Rik|Cope1	coatomer protein complex, subunit epsilon	protein-coding	0.015000	0.547264	
mm_66076.1	chr7	30924077	30924277	-	1	NA	NA	NA	4	NM_183257	66438	Mm.389860	NM_183257	ENSMUSG00000056978	Hamp2	1810073K19Rik|HEPC2	hepcidin antimicrobial peptide 2	protein-coding	0.010000	0.567164	-34(TCCCATAAAAAG,-,0.00),-32(CCATAAAAAGGA,+,0.00)
mm_47776.1	chr5	131885817	131886017	-	1	NA	NA	NA	5648	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.015000	0.442786	
mm_93052.1	chr10	88583472	88583672	-	1	NA	NA	NA	21580	NM_001252372	109272	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0.015000	0.388060	
mm_108617.1	chr12	85524629	85524829	+	1	NA	NA	NA	50828	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.015000	0.557214	
mm_167949.1	chrX	139610566	139610766	+	1	NA	NA	NA	46	NM_023270	66889	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	0.135000	0.741294	
mm_72030.1	chr8	70762857	70763057	+	1	NA	NA	NA	-2036	NM_183170	234384	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0.020000	0.527363	
mm_431.1	chr1	34473218	34473418	+	1	NA	NA	NA	13572	NM_011206	19253	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.035000	0.547264	
mm_123854.1	chr14	70925741	70925941	-	1	NA	NA	NA	35734	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.070000	0.601990	
mm_129408.1	chr15	78297986	78298186	-	1	NA	NA	NA	7635	NM_007781	12984	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	0.010000	0.522388	
mm_91670.1	chr10	43174479	43174679	-	1	NA	NA	NA	-49	NM_175407	109205	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis-binding protein homolog (Drosophila)	protein-coding	0.125000	0.786070	
mm_94357.1	chr11	4986789	4986989	+	1	NA	NA	NA	65	NM_007454	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.100000	0.736318	
mm_168036.1	chrY	90742428	90742628	-	1	NA	NA	NA	12522	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.070000	0.646766	
mm_48565.1	chr5	143225784	143225984	-	1	NA	NA	NA	-2	NM_029048	74673	Mm.273303	NM_029048	ENSMUSG00000039296	Spdye4a	4930445A17Rik|4930451F05Rik|RINGO E4A|Spdy2|Spdyb|Spdye4|Spy/Ringo B	speedy/RINGO cell cycle regulator family, member E4A	protein-coding	0.025000	0.517413	
mm_132276.1	chr16	32930846	32931046	+	1	NA	NA	NA	16846	NM_001310672	70144	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	0.005000	0.303483	12(TTTTATATAGCC,+,0.00)
mm_61761.1	chr7	82771686	82771886	+	1	NA	NA	NA	-16142	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.060000	0.686567	
mm_146156.1	chr18	75005792	75005992	+	1	NA	NA	NA	-8	NM_001001181	407819	Mm.29866	NM_001001181	ENSMUSG00000036299	BC031181	-	cDNA sequence BC031181	protein-coding	0.070000	0.631841	
mm_66288.1	chr7	37773904	37774104	-	1	NA	NA	NA	-4252	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.025000	0.427861	65(GCCTTTAAAAAA,-,0.00),66(CCTTTAAAAAAG,+,0.00)
mm_113779.1	chr13	45391687	45391887	+	1	NA	NA	NA	2045	NM_153789	218203	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.015000	0.427861	
mm_17695.1	chr2	32337979	32338179	-	1	NA	NA	NA	15250	NM_001301737	13429	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	0.040000	0.577114	
mm_6447.1	chr1	74001840	74002040	-	1	NA	NA	NA	122507	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.005000	0.442786	
mm_133258.1	chr16	77329448	77329648	+	1	NA	NA	NA	220	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.030000	0.527363	
mm_4500.1	chr1	173673696	173673896	+	1	NA	NA	NA	116	NM_001162938	100033459	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|Pydc3|Pyr-rv1	interferon activated gene 208	protein-coding	0.000000	0.437811	
mm_78767.1	chr9	43310713	43310913	+	1	NA	NA	NA	50	NM_023655	72169	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	0.025000	0.636816	
mm_137516.1	chr17	27101449	27101649	+	1	NA	NA	NA	10304	NR_106142	102465779		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	0.020000	0.616915	
mm_35065.1	chr4	6454092	6454292	-	1	NA	NA	NA	79	NM_010945	18201	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.150000	0.791045	
mm_138783.1	chr17	37270514	37270714	+	1	NA	NA	NA	380	NM_013819	14991	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	0.050000	0.557214	
mm_63701.1	chr7	130645607	130645807	+	1	NA	NA	NA	-46849	NM_001347637	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.025000	0.462687	-96(CCTTTTAGACCC,+,0.00),-89(GACCCTAAAAGG,-,0.00)
mm_160339.1	chr8	14888376	14888576	+	1	NA	NA	NA	-60	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.055000	0.577114	
mm_70164.1	chr7	143592401	143592601	-	1	NA	NA	NA	7589	NM_001252593	27267	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	0.045000	0.606965	
mm_58414.1	chr7	3290445	3290645	+	1	NA	NA	NA	-10	NM_016969	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.040000	0.606965	
mm_133580.1	chr16	91407009	91407209	+	1	NA	NA	NA	874	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.015000	0.517413	
mm_12478.1	chr2	71528998	71529198	+	1	NA	NA	NA	-347	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.075000	0.696517	
mm_119408.1	chr14	44988494	44988694	+	1	NA	NA	NA	483	NM_008964	19217	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.025000	0.597015	
mm_133320.1	chr16	77674515	77674715	+	1	NA	NA	NA	28342	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0.010000	0.333333	-52(ATTTTTAAAGAC,+,0.00)
mm_108208.1	chr12	76914546	76914746	+	1	NA	NA	NA	47602	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.025000	0.582090	
mm_132412.1	chr16	35062924	35063124	+	1	NA	NA	NA	40603	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.000000	0.318408	
mm_26566.1	chr3	146570308	146570508	+	1	NA	NA	NA	-26741	NM_009474	22262	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.025000	0.442786	
mm_143665.1	chr17	79871838	79872038	-	1	NA	NA	NA	24185	NM_178050	56298	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.000000	0.437811	-63(GGGTTTTAATGG,-,0.00)
mm_58516.1	chr7	4133548	4133748	+	1	NA	NA	NA	3278	NR_033548	100037396	Mm.447887	NR_033548	ENSMUSG00000085886	D030047H15Rik	Gm15924|OTTMUSG00000027889	RIKEN cDNA D030047H15 gene	ncRNA	0.015000	0.587065	
mm_166402.1	chr5	136038965	136039165	+	1	NA	NA	NA	569	NM_175309	100647	Mm.3089	NM_175309	ENSMUSG00000042985	Upk3b	AI447729|AI957187|P35|PMS2L14|UpIIIb	uroplakin 3B	protein-coding	0.030000	0.547264	
mm_22140.1	chr2	170775630	170775830	-	1	NA	NA	NA	43923	NM_001163686	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0.045000	0.572139	
mm_145272.1	chr18	52768303	52768503	+	1	NA	NA	NA	259	NM_001199154	67847	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0.170000	0.805970	
mm_1699.1	chr1	75143157	75143357	+	1	NA	NA	NA	99	NM_001305232	227298	Mm.273062	NM_170755	ENSMUSG00000049339	Fam134a	-	family with sequence similarity 134, member A	protein-coding	0.045000	0.611940	
mm_159273.1	chr2	164585074	164585274	-	1	NA	NA	NA	3	NM_001177848	209351	Mm.293365	NM_001033240	ENSMUSG00000074595	Wfdc6a	Gm122	WAP four-disulfide core domain 6A	protein-coding	0.030000	0.582090	
mm_130086.1	chr15	89378912	89379112	-	1	NA	NA	NA	242	NM_001013022	70113	Mm.247273	NM_001013022	ENSMUSG00000047394	Odf3b	2010001J22Rik	outer dense fiber of sperm tails 3B	protein-coding	0.040000	0.587065	
mm_133886.1	chr16	96531200	96531400	+	1	NA	NA	NA	63694	NM_008791	18546	Mm.5023	NM_008791	ENSMUSG00000090223	Pcp4	P16Rimb19|Pcp-4|Pep19	Purkinje cell protein 4	protein-coding	0.005000	0.492537	
mm_118189.1	chr13	107726288	107726488	-	1	NA	NA	NA	34699	NR_029759	723929		NR_029759	ENSMUSG00000065425	Mir325	Mirn325|mmu-mir-325	microRNA 325	ncRNA	0.025000	0.432836	
mm_167606.1	chr9	53667313	53667513	-	1	NA	NA	NA	94	NM_001161618	75717	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0.120000	0.706468	
mm_49799.1	chr6	35510472	35510672	+	1	NA	NA	NA	29316	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.373134	
mm_86028.1	chr9	113662271	113662471	-	1	NA	NA	NA	45888	NM_001164678	18571	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0.015000	0.427861	
mm_66183.1	chr7	34168449	34168649	-	1	NA	NA	NA	-20	NM_016682	50995	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	0.125000	0.746269	
mm_137234.1	chr17	24419365	24419565	+	1	NA	NA	NA	4790	NM_001080128	19826	Mm.1951	NM_009070	ENSMUSG00000034681	Rnps1	-	ribonucleic acid binding protein S1	protein-coding	0.000000	0.417910	
mm_134119.1	chr16	10313781	10313981	-	1	NA	NA	NA	87	NM_007929	13731	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	0.110000	0.741294	
mm_6198.1	chr1	65184016	65184216	-	1	NA	NA	NA	2363	NM_001111320	15926	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.005000	0.233831	
mm_131161.1	chr16	6986604	6986804	+	1	NA	NA	NA	-83131	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.005000	0.527363	
mm_172662.1	chr8	41936734	41936934	+	1	NA	NA	NA	109567	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	0.000000	0.378109	
mm_166477.1	chr5	144295014	144295214	+	1	NA	NA	NA	18053	NR_040432	100504231	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	OTTMUSG00000025583	predicted gene 15708	ncRNA	0.030000	0.502488	
mm_152956.1	chr19	29325016	29325216	-	1	NA	NA	NA	202	NM_013754	27356	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding	0.020000	0.517413	
mm_121536.1	chr14	122375398	122375598	+	1	NA	NA	NA	75617	NR_033325	328479	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.030000	0.467662	
mm_118363.1	chr13	115101714	115101914	-	1	NA	NA	NA	150	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.045000	0.542289	
mm_52264.1	chr6	108277015	108277215	+	1	NA	NA	NA	64019	NM_010585	16438	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|ENSMUSG00000072853|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0.000000	0.472637	
mm_11715.1	chr2	36237867	36238067	+	1	NA	NA	NA	7541	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.020000	0.522388	
mm_137678.1	chr17	28817585	28817785	+	1	NA	NA	NA	16559	NM_001081315	268936	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0.050000	0.547264	
mm_136297.1	chr16	91514708	91514908	-	1	NA	NA	NA	29593	NM_010508	15975	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	CD118|Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.040000	0.497512	
mm_98273.1	chr11	89010873	89011073	+	1	NA	NA	NA	11570	NM_009546	217069	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.030000	0.497512	
mm_111731.1	chr12	103773525	103773725	-	1	NA	NA	NA	8	NM_009246	20703	Mm.439695	NM_009246	ENSMUSG00000071177	Serpina1d	AI118301|Dom4|PI4|Spi1-4	serine (or cysteine) peptidase inhibitor, clade A, member 1D	protein-coding	0.010000	0.522388	
mm_19549.1	chr2	98665063	98665263	-	1	NA	NA	NA	1197506	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.020000	0.338308	-100(CACTTTTAAAAC,-,0.00)
mm_19379.1	chr2	91195006	91195206	-	1	NA	NA	NA	10	NM_001177730	22259	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0.035000	0.616915	
mm_78666.1	chr9	40696019	40696219	+	1	NA	NA	NA	10155	NM_133733	71566	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.020000	0.432836	
mm_75198.1	chr8	39006170	39006370	-	1	NA	NA	NA	403	NM_030254	80286	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	0.115000	0.726368	
mm_85649.1	chr9	107657753	107657953	-	1	NA	NA	NA	9546	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.025000	0.616915	
mm_65932.1	chr7	30322925	30323125	-	1	NA	NA	NA	-650	NM_001033140	68332	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	0.020000	0.442786	-52(CCATATAAAAAC,-,0.00)
mm_20571.1	chr2	131085107	131085307	-	1	NA	NA	NA	1558	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.010000	0.552239	
mm_41442.1	chr5	90905125	90905325	+	1	NA	NA	NA	1326	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.025000	0.517413	-78(CCTTTAAGATAC,+,0.00)
mm_143244.1	chr17	64289946	64290146	-	1	NA	NA	NA	41837	NM_144859	224938	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja 2, RING-H2 motif containing	protein-coding	0.015000	0.373134	
mm_68452.1	chr7	110061259	110061459	-	1	NA	NA	NA	-343	NM_009281	20841	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0.070000	0.611940	
mm_86441.1	chr10	3973130	3973330	+	1	NA	NA	NA	155	NM_172308	270685	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.080000	0.691542	
mm_8771.1	chr1	161034713	161034913	-	1	NA	NA	NA	-353	NR_002840	14455	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	0.095000	0.691542	
mm_63253.1	chr7	126623366	126623566	+	1	NA	NA	NA	2004	NM_019738	56312	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	0.000000	0.517413	
mm_139053.1	chr17	46328010	46328210	+	1	NA	NA	NA	-87	NM_170680	224814	Mm.76543	NM_145140	ENSMUSG00000032842	Abcc10	Mrp7|mFLJ00002	ATP-binding cassette, sub-family C (CFTR/MRP), member 10	protein-coding	0.055000	0.567164	
mm_12442.1	chr2	70931049	70931249	+	1	NA	NA	NA	87225	NM_001110512	228019	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.030000	0.492537	
mm_39029.1	chr4	152152289	152152489	-	1	NA	NA	NA	-182	NM_207687	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.080000	0.726368	
mm_101003.1	chr11	8468632	8468832	-	1	NA	NA	NA	195803	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.060000	0.616915	
mm_75403.1	chr8	46209048	46209248	-	1	NA	NA	NA	1861	NM_007450	11739	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	0.040000	0.582090	
mm_24239.1	chr3	89043160	89043360	+	1	NA	NA	NA	46771	NM_001083808	72296	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.015000	0.432836	0(ACCCCTAAAAGC,-,0.00)
mm_141986.1	chr17	35165047	35165247	-	1	NA	NA	NA	-270	NM_020027	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.110000	0.601990	85(CCCTTTATGCAA,+,0.00)
mm_55091.1	chr6	49252979	49253179	-	1	NA	NA	NA	10973	NM_001347209	101214	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha homolog (Drosophila)	protein-coding	0.010000	0.298507	
mm_40653.1	chr5	65114847	65115047	+	1	NA	NA	NA	7379	NM_001347355	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.005000	0.348259	
mm_56265.1	chr6	90947085	90947285	-	1	NA	NA	NA	-137062	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.005000	0.383085	88(GTATTTATAGAG,+,0.00)
mm_92060.1	chr10	62513425	62513625	-	1	NA	NA	NA	-5770	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.025000	0.482587	36(CTCTTTAGAGAG,+,0.00)
mm_60330.1	chr7	44261363	44261563	+	1	NA	NA	NA	-4259	NM_001195034	100503991	Mm.367353	NM_001195034	ENSMUSG00000012777	Acpt	EG546967|Gm1432	acid phosphatase, testicular	protein-coding	0.020000	0.582090	
mm_124082.1	chr14	78656252	78656452	-	1	NA	NA	NA	-11901	NR_104044	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.010000	0.378109	
mm_25440.1	chr3	108146112	108146312	+	1	NA	NA	NA	-60	NM_010306	14679	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	0.080000	0.611940	84(GCCTTAATACCC,+,0.00)
mm_162053.1	chrX	7671231	7671431	-	1	NA	NA	NA	59	NM_019755	18824	Mm.18565	NM_019755	ENSMUSG00000031146	Plp2	mIMA4	proteolipid protein 2	protein-coding	0.085000	0.706468	
mm_51415.1	chr6	78381809	78382009	+	1	NA	NA	NA	1200	NM_011259	19694	Mm.2552	NM_011259	ENSMUSG00000079516	Reg3a	AV063448	regenerating islet-derived 3 alpha	protein-coding	0.015000	0.482587	
mm_110953.1	chr12	76709942	76710142	-	1	NA	NA	NA	505	NM_013675	20741	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0.100000	0.716418	
mm_124448.1	chr14	118917461	118917661	-	1	NA	NA	NA	5606	NR_130725	66573	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	0.005000	0.467662	
mm_167420.1	chr8	111537459	111537659	+	1	NA	NA	NA	-784	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.080000	0.641791	
mm_169974.1	chr17	14763819	14764019	-	1	NA	NA	NA	-69657	NM_011581	21826	Mm.26688	NM_011581	ENSMUSG00000023885	Thbs2	TSP2|Thbs-2	thrombospondin 2	protein-coding	0.030000	0.462687	
mm_117351.1	chr13	69738886	69739086	-	1	NA	NA	NA	911	NM_001145162	76980	Mm.23960	NM_001145162	ENSMUSG00000052981	Ube2ql1	3110006E14Rik	ubiquitin-conjugating enzyme E2Q family-like 1	protein-coding	0.170000	0.850746	
mm_121472.1	chr14	120946719	120946919	+	1	NA	NA	NA	35625	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	0.015000	0.477612	
mm_128776.1	chr15	66782989	66783189	-	1	NA	NA	NA	48740	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.000000	0.343284	89(TCTTTAAAACAC,+,0.00)
mm_30287.1	chr3	148989309	148989509	-	1	NA	NA	NA	-34774	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.090000	0.636816	
mm_161908.1	chr18	62340743	62340943	+	1	NA	NA	NA	16639	NM_008313	15562	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	0.010000	0.358209	
mm_77030.1	chr8	109251385	109251585	-	1	NA	NA	NA	89423	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo	0.045000	0.572139	
mm_86900.1	chr10	22306637	22306837	+	1	NA	NA	NA	17	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.010000	0.517413	
mm_144813.1	chr18	36287852	36288052	+	1	NA	NA	NA	6790	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.050000	0.547264	
mm_140612.1	chr17	10840061	10840261	-	1	NA	NA	NA	30	NM_027032	69310	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.055000	0.567164	15(GCTCTTAGAGAC,+,0.00)
mm_145076.1	chr18	42275281	42275481	+	1	NA	NA	NA	28	NM_172626	225432	Mm.329400	NM_172626	ENSMUSG00000024491	Rbm27	A730010I06|AI043120|Psc1|mKIAA1311	RNA binding motif protein 27	protein-coding	0.070000	0.646766	
mm_114381.1	chr13	63240293	63240493	+	1	NA	NA	NA	364	NR_110521	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.045000	0.542289	
mm_14416.1	chr2	130424257	130424457	+	1	NA	NA	NA	37	NM_030559	80743	Mm.276092	NM_030559	ENSMUSG00000027411	Vps16	1810074M16Rik	VSP16 CORVET/HOPS core subunit	protein-coding	0.080000	0.606965	
mm_55701.1	chr6	72899869	72900069	-	1	NA	NA	NA	10	NM_019715	74287	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0.175000	0.810945	
mm_114304.1	chr13	59585295	59585495	+	1	NA	NA	NA	62	NM_030153	78689	Mm.253902	NM_030153	ENSMUSG00000021555	Naa35	A330021G12Rik|A330027C19Rik|AI158944|C030004C14Rik|Mak10	N(alpha)-acetyltransferase 35, NatC auxiliary subunit	protein-coding	0.170000	0.736318	
mm_16518.1	chr2	181493103	181493303	+	1	NA	NA	NA	-3	NM_183181	241850	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	0.015000	0.587065	
mm_152268.1	chr19	8809280	8809480	-	1	NA	NA	NA	6850	NM_001098237	75291	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	0.000000	0.343284	
mm_21828.1	chr2	165388124	165388324	-	1	NA	NA	NA	35	NM_178411	228876	Mm.26316	NM_178411	ENSMUSG00000017667	Zfp334	D2Ertd535e	zinc finger protein 334	protein-coding	0.075000	0.626866	
mm_9008.1	chr1	165948436	165948636	-	1	NA	NA	NA	-13588	NM_198934	18986	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0.005000	0.278607	32(CTTTTTAAATCC,+,0.00)
mm_98052.1	chr11	85821748	85821948	+	1	NA	NA	NA	10540	NR_077059	69909	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.030000	0.606965	
mm_125.1	chr1	9848228	9848428	+	1	NA	NA	NA	47	NM_001037759	170755	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.120000	0.731343	
mm_107550.1	chr12	41024261	41024461	+	1	NA	NA	NA	271	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.120000	0.701493	
mm_112701.1	chr13	17805434	17805634	+	1	NA	NA	NA	-437	NM_027118	69562	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.080000	0.651741	
mm_163699.1	chr13	103977956	103978156	+	1	NA	NA	NA	-57470	NM_001005868	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.020000	0.467662	
mm_73525.1	chr8	107544967	107545167	+	1	NA	NA	NA	-6177	NR_029553	387158		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0.030000	0.587065	
mm_38695.1	chr4	145213813	145214013	-	1	NA	NA	NA	-18908	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.000000	0.507463	
mm_6655.1	chr1	79861199	79861399	-	1	NA	NA	NA	-2634	NM_009255	20720	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	0.000000	0.388060	
mm_132706.1	chr16	43364051	43364251	+	1	NA	NA	NA	56045	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.010000	0.477612	
mm_66940.1	chr7	61916391	61916591	-	1	NA	NA	NA	11083	NR_015533	319893	Mm.490625	NR_015533		A230057D06Rik	-	RIKEN cDNA A230057D06 gene	ncRNA	0.000000	0.308458	
mm_152170.1	chr19	7333042	7333242	-	1	NA	NA	NA	8718	NM_001080389	13728	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.020000	0.507463	
mm_104206.1	chr11	88048215	88048415	-	1	NA	NA	NA	942	NM_173374	110809	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	0.105000	0.746269	
mm_135519.1	chr16	48818626	48818826	-	1	NA	NA	NA	1870	NM_023881	57263	Mm.21123	NM_023881	ENSMUSG00000022650	Retnlb	9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3	resistin like beta	protein-coding	0.030000	0.507463	
mm_58910.1	chr7	17213241	17213441	+	1	NA	NA	NA	9864	NM_054064	114872	Mm.322280	NM_054064	ENSMUSG00000023159	Psg29	AA102956|AA409969|cea17	pregnancy-specific glycoprotein 29	protein-coding	0.005000	0.457711	
mm_48392.1	chr5	139814155	139814355	-	1	NA	NA	NA	28	NM_001161548	231832	Mm.482655	NM_144914	ENSMUSG00000036687	Tmem184a	Sdmg1	transmembrane protein 184a	protein-coding	0.035000	0.666667	
mm_66717.1	chr7	46099655	46099855	-	1	NA	NA	NA	482	NM_010602	16514	Mm.333863	NM_010602	ENSMUSG00000096146	Kcnj11	Kir6.2|mBIR	potassium inwardly rectifying channel, subfamily J, member 11	protein-coding	0.050000	0.592040	52(CCTCAAATGGCC,+,0.00)
mm_138525.1	chr17	35241746	35241946	+	1	NA	NA	NA	100	NM_019693	53817	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	0.120000	0.721393	
mm_3474.1	chr1	150104935	150105135	+	1	NA	NA	NA	5004	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.015000	0.447761	74(TTTTCTAAAAGG,-,0.00)
mm_155995.1	chrX	106156738	106156938	+	1	NA	NA	NA	13563	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.005000	0.437811	
mm_58442.1	chr7	3298693	3298893	+	1	NA	NA	NA	-4739	NM_001291434	18752	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	0.015000	0.363184	-7(CGGCCTTAAAGG,-,0.00),-6(GGCCTTAAAGGC,-,0.00)
mm_143378.1	chr17	67924417	67924617	-	1	NA	NA	NA	26423	NM_001347410	268970	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0.005000	0.338308	-7(TTTTTTATGGTG,+,0.00)
mm_167252.1	chr8	24779422	24779622	+	1	NA	NA	NA	44847	NM_001272058	11499	Mm.143889	NM_007401	ENSMUSG00000031554	Adam5	tMDC II|tMDCII	a disintegrin and metallopeptidase domain 5	protein-coding	0.005000	0.363184	
mm_31453.1	chr4	48618830	48619030	+	1	NA	NA	NA	33737	NM_021436	230157	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0.010000	0.378109	
mm_11225.1	chr2	29788170	29788370	+	1	NA	NA	NA	7	NM_178693	227683	Mm.245948	NM_178693	ENSMUSG00000026798	Coq4	A330041N06|D2Ertd97e	coenzyme Q4	protein-coding	0.085000	0.631841	
mm_29657.1	chr3	122539447	122539647	-	1	NA	NA	NA	2134	NR_106117	102465764		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.035000	0.472637	
mm_157677.1	chrX	59543947	59544147	-	1	NA	NA	NA	41525	NM_001290414	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding	0.005000	0.358209	
mm_13198.1	chr2	93452715	93452915	+	1	NA	NA	NA	-4	NR_040532	100038525	Mm.440596	NR_040532	ENSMUSG00000075025	Gm10804	ENSMUSG00000075025	predicted gene 10804	ncRNA	0.015000	0.527363	
mm_75237.1	chr8	39630240	39630440	-	1	NA	NA	NA	12338	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.005000	0.383085	
mm_123121.1	chr14	56120525	56120725	-	1	NA	NA	NA	0	NM_010373	14942	Mm.14424	NM_010373	ENSMUSG00000022156	Gzme	CCP3|Ctla-6|Ctla6|MCSP-2	granzyme E	protein-coding	0.000000	0.487562	
mm_65045.1	chr7	18616298	18616498	-	1	NA	NA	NA	103	NM_020261	56868	Mm.333617	NM_020261	ENSMUSG00000074359	Psg23	1620401C02Rik|cea11	pregnancy-specific glycoprotein 23	protein-coding	0.000000	0.507463	
mm_27773.1	chr3	72967762	72967962	-	1	NA	NA	NA	-996	NM_001081137	69983	Mm.261054	NM_001081137	ENSMUSG00000027790	Sis	2010204N08Rik|SI|Si-s	sucrase isomaltase (alpha-glucosidase)	protein-coding	0.000000	0.353234	
mm_107363.1	chr12	32840957	32841157	+	1	NA	NA	NA	16941	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.015000	0.412935	
mm_118275.1	chr13	112651319	112651519	-	1	NA	NA	NA	891	NM_010029	13206	Mm.12818	NM_010029	ENSMUSG00000021758	Ddx4	AV206478|Mvh|VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding	0.005000	0.343284	
mm_161533.1	chr15	102407785	102407985	+	1	NA	NA	NA	1569	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.025000	0.507463	
mm_160735.1	chr10	79148715	79148915	+	1	NA	NA	NA	-1	NM_001103368	624765	Mm.469843	NM_001103368	ENSMUSG00000091888	Vmn2r80	EG624765	vomeronasal 2, receptor 80	protein-coding	0.005000	0.338308	
mm_64415.1	chr7	142534491	142534691	+	1	NA	NA	NA	1474	NM_011288	19935	Mm.12144	NM_011288	ENSMUSG00000037772	Mrpl23	L23mrp|Rpl23|Rpl23l	mitochondrial ribosomal protein L23	protein-coding	0.005000	0.552239	
mm_18828.1	chr2	74691669	74691869	-	1	NA	NA	NA	-122	NM_013554	15430	Mm.24420	NM_013554	ENSMUSG00000050368	Hoxd10	AI385591|AI874987|Hox-4.5|Hox-5.3	homeobox D10	protein-coding	0.080000	0.646766	
mm_70668.1	chr8	14888905	14889105	+	1	NA	NA	NA	469	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.060000	0.651741	
mm_153852.1	chr19	46377909	46378109	-	1	NA	NA	NA	17726	NM_016860	54130	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0.025000	0.621891	
mm_4679.1	chr1	180541490	180541690	+	1	NA	NA	NA	-27385	NM_007415	11545	Mm.277779	NM_007415	ENSMUSG00000026496	Parp1	5830444G22Rik|AI893648|ARTD1|Adprp|Adprt1|C80510|PARP|PPOL|parp-1|sPARP-1	poly (ADP-ribose) polymerase family, member 1	protein-coding	0.010000	0.507463	
mm_166041.1	chr4	130055265	130055465	+	1	NA	NA	NA	7525	NM_028266	107581	Mm.41860	NM_028266	ENSMUSG00000040690	Col16a1	2700007F12Rik|A530052M23Rik|AI838662|CA1F	collagen, type XVI, alpha 1	protein-coding	0.020000	0.582090	
mm_84826.1	chr9	78108502	78108702	-	1	NA	NA	NA	54	NM_023605	71538	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	0.165000	0.751244	
mm_67578.1	chr7	82541414	82541614	-	1	NA	NA	NA	107014	NM_177894	330577	Mm.222812	NM_177894	ENSMUSG00000038570	Saxo2	1700129I04Rik|D030069K18|Fam154b	stabilizer of axonemal microtubules 2	protein-coding	0.010000	0.497512	56(GCCTATAGAGAG,+,0.00)
mm_20938.1	chr2	151009248	151009448	-	1	NA	NA	NA	50	NM_207204	78177	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	0.110000	0.746269	
mm_136819.1	chr17	12408964	12409164	+	1	NA	NA	NA	30455	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.015000	0.547264	
mm_169322.1	chr14	114349451	114349651	+	1	NA	NA	NA	-482414	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0.020000	0.537313	
mm_83832.1	chr9	54193421	54193621	-	1	NA	NA	NA	-79	NM_007810	13075	Mm.5199	NM_007810	ENSMUSG00000032274	Cyp19a1	Ar|ArKO|Cyp19|Int-5|Int5|p450arom	cytochrome P450, family 19, subfamily a, polypeptide 1	protein-coding	0.010000	0.427861	
mm_117888.1	chr13	99422564	99422764	-	1	NA	NA	NA	-9838	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.010000	0.328358	
mm_94693.1	chr11	20021724	20021924	+	1	NA	NA	NA	91127	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.015000	0.517413	
mm_164160.1	chr15	72848782	72848982	+	1	NA	NA	NA	-38558	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.015000	0.437811	
mm_114592.1	chr13	75761821	75762021	+	1	NA	NA	NA	54437	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.005000	0.407960	3(ATGTATTTAAGG,-,0.00)
mm_84075.1	chr9	58201839	58202039	-	1	NA	NA	NA	-140	NM_001161540	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.105000	0.557214	
mm_4600.1	chr1	178405942	178406142	+	1	NA	NA	NA	161	NM_026626	68226	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.095000	0.681592	
mm_1003.1	chr1	58716744	58716944	+	1	NA	NA	NA	3558	NM_207653	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.005000	0.402985	
mm_135767.1	chr16	56721167	56721367	-	1	NA	NA	NA	-3817	NM_019678	21787	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0.005000	0.402985	
mm_143342.1	chr17	66519640	66519840	-	1	NA	NA	NA	-70	NM_024448	19328	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0.140000	0.731343	
mm_67888.1	chr7	99353013	99353213	-	1	NA	NA	NA	126	NM_009825	12406	Mm.22708	NM_009825	ENSMUSG00000070436	Serpinh1	BERF-1|Cbp1|Cbp2|Hsp47|J6|Serpinh2|gp46	serine (or cysteine) peptidase inhibitor, clade H, member 1	protein-coding	0.060000	0.661692	-35(CCATATATAGAT,+,0.00)
mm_144775.1	chr18	35829687	35829887	+	1	NA	NA	NA	-31	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.115000	0.746269	
mm_147494.1	chr18	47368821	47369021	-	1	NA	NA	NA	-51	NM_001311097	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.100000	0.701493	
mm_975.1	chr1	58393117	58393317	+	1	NA	NA	NA	81	NM_025824	66882	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.140000	0.716418	
mm_155809.1	chrX	99147483	99147683	+	1	NA	NA	NA	11522	NM_010110	13641	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	0.020000	0.562189	65(GCTTTTATAATC,+,0.00)
mm_57863.1	chr6	129615746	129615946	-	1	NA	NA	NA	6837	NM_033078	27007	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	0.005000	0.338308	
mm_131145.1	chr16	6503080	6503280	+	1	NA	NA	NA	527593	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA	0.000000	0.393035	-75(TCATTTAAAGCA,+,0.00)
mm_117054.1	chr13	58400390	58400590	-	1	NA	NA	NA	1679	NM_001301343	15387	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.005000	0.328358	-80(GTTTTTATATAC,+,0.00)
mm_58570.1	chr7	4793041	4793241	+	1	NA	NA	NA	176	NM_009081	19943	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	0.060000	0.616915	
mm_170915.1	chr2	36365275	36365475	-	1	NA	NA	NA	-11403	NM_146947	258949	Mm.377765	NM_146947	ENSMUSG00000068950	Olfr338	MOR136-5	olfactory receptor 338	protein-coding	0.040000	0.492537	-34(GGGTATTTAAGC,-,0.00)
mm_152885.1	chr19	24676205	24676405	-	1	NA	NA	NA	2297	NM_183160	226040	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	0.000000	0.383085	
mm_114230.1	chr13	56596240	56596440	+	1	NA	NA	NA	-13263	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.015000	0.537313	
mm_60462.1	chr7	44477710	44477910	+	1	NA	NA	NA	-6707	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.437811	
mm_54654.1	chr6	39078031	39078231	-	1	NA	NA	NA	-10545	NR_040523	69986	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.005000	0.412935	
mm_15729.1	chr2	164154534	164154734	+	1	NA	NA	NA	16479	NM_008435	16538	Mm.6217	NM_008435	ENSMUSG00000040164	Kcns1	Kv9.1	K+ voltage-gated channel, subfamily S, 1	protein-coding	0.015000	0.447761	
mm_157814.1	chrX	73966891	73967091	-	1	NA	NA	NA	-634	NM_008224	15161	Mm.491126	NM_008224	ENSMUSG00000031386	Hcfc1	AW060991|HCF|HCF1	host cell factor C1	protein-coding	0.070000	0.582090	
mm_151637.1	chr19	3942320	3942520	-	1	NA	NA	NA	7234	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.030000	0.582090	
mm_63903.1	chr7	139212910	139213110	+	1	NA	NA	NA	22	NM_027164	76612	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	0.065000	0.676617	
mm_91588.1	chr10	40257568	40257768	-	1	NA	NA	NA	-3	NM_026113	67371	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	0.080000	0.621891	
mm_24267.1	chr3	89188224	89188424	+	1	NA	NA	NA	5099	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.045000	0.626866	
mm_142353.1	chr17	43630197	43630397	-	1	NA	NA	NA	2	NM_001161366	210510	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	0.120000	0.741294	
mm_171403.1	chr4	12431051	12431251	+	1	NA	NA	NA	-259136	NM_026558	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.010000	0.482587	
mm_141360.1	chr17	28801493	28801693	-	1	NA	NA	NA	467	NM_001081315	268936	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0.100000	0.711443	
mm_113002.1	chr13	21811646	21811846	+	1	NA	NA	NA	0	NM_001195421	100041230	Mm.442307	NM_001195421	ENSMUSG00000069306	Hist1h4m	Gm11275|OTTMUSG00000000446	histone cluster 1, H4m	protein-coding	0.060000	0.582090	-35(CCCTATAAGAGG,-,0.00)
mm_71440.1	chr8	46512853	46513053	+	1	NA	NA	NA	21987	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.015000	0.432836	
mm_152685.1	chr19	16267539	16267739	-	1	NA	NA	NA	47365	NR_105832	102465218		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.045000	0.537313	-17(TGCTTTTAAAAG,-,0.00),-16(GCTTTTAAAAGC,+,0.00),-16(GCTTTTAAAAGC,-,0.00),-15(CTTTTAAAAGCA,+,0.00)
mm_23847.1	chr3	83008289	83008489	+	1	NA	NA	NA	665	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.030000	0.417910	
mm_51710.1	chr6	86733553	86733753	+	1	NA	NA	NA	-275	NM_011818	23885	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	0.050000	0.572139	
mm_111980.1	chr12	110393493	110393693	-	1	NA	NA	NA	-53586	NM_001135001	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.010000	0.477612	
mm_82307.1	chr9	7872494	7872694	-	1	NA	NA	NA	576	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.045000	0.587065	
mm_9646.1	chr1	177258277	177258477	-	1	NA	NA	NA	-9610	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.125000	0.810945	
mm_61102.1	chr7	51880234	51880434	+	1	NA	NA	NA	1367	NM_001330607	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.015000	0.497512	
mm_152809.1	chr19	23058067	23058267	-	1	NA	NA	NA	-83059	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.015000	0.472637	-53(CCCCATAAGAGG,-,0.00)
mm_127546.1	chr15	102144377	102144577	+	1	NA	NA	NA	291	NM_008344	16012	Mm.358609	NM_008344	ENSMUSG00000023046	Igfbp6	IGFBP-6	insulin-like growth factor binding protein 6	protein-coding	0.020000	0.611940	-35(TGGCTTTTAAGG,-,0.00),-34(GGCTTTTAAGGG,-,0.00),-33(GCTTTTAAGGGG,+,0.00),-32(CTTTTAAGGGGC,+,0.00)
mm_22383.1	chr2	181156802	181157002	-	1	NA	NA	NA	113	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.125000	0.691542	
mm_59590.1	chr7	28131602	28131802	+	1	NA	NA	NA	2236	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.035000	0.537313	-60(GGCCTTTAAAGT,-,0.00),-59(GCCTTTAAAGTA,+,0.00)
mm_81962.1	chr9	120933387	120933587	+	1	NA	NA	NA	87	NM_007614	12387	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	0.165000	0.726368	-32(GCTTATAAATCG,+,0.00)
mm_21057.1	chr2	152654196	152654396	-	1	NA	NA	NA	-15165	NM_010376	14950	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	0.005000	0.502488	
mm_76581.1	chr8	89015523	89015723	-	1	NA	NA	NA	-9112	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.010000	0.512438	
mm_153741.1	chr19	44696288	44696488	-	1	NA	NA	NA	-61006	NM_011037	18504	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0.005000	0.537313	
mm_22623.1	chr3	14661779	14661979	+	1	NA	NA	NA	20152	NM_024495	71934	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	0.000000	0.358209	
mm_76587.1	chr8	89042358	89042558	-	1	NA	NA	NA	1704	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.100000	0.616915	
mm_79307.1	chr9	52047916	52048116	+	1	NA	NA	NA	75	NM_001104617	19684	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	0.155000	0.736318	
mm_36116.1	chr4	58910049	58910249	-	1	NA	NA	NA	2576	NM_172381	230249	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|mKIAA0368	expressed sequence AI314180	protein-coding	0.005000	0.338308	
mm_93592.1	chr10	117071877	117072077	-	1	NA	NA	NA	-8163	NM_007636	12461	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.000000	0.308458	
mm_5712.1	chr1	43827669	43827869	-	1	NA	NA	NA	-61	NM_026430	67883	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.130000	0.761194	
mm_158333.1	chrX	133961744	133961944	-	1	NA	NA	NA	19968	NM_001290718	27359	Mm.38674	NM_013757	ENSMUSG00000031255	Sytl4	Gph|Slp4	synaptotagmin-like 4	protein-coding	0.015000	0.527363	
mm_70701.1	chr8	15036669	15036869	+	1	NA	NA	NA	9309	NR_037972	434285	Mm.334425	NM_001007591	ENSMUSG00000049008	BB014433	-	expressed sequence BB014433	ncRNA	0.035000	0.621891	
mm_114105.1	chr13	54783891	54784091	+	1	NA	NA	NA	-7	NM_001286179	218268	Mm.425821	NM_001033269	ENSMUSG00000074895	Eif4e1b	Eif4eloo|Gm273	eukaryotic translation initiation factor 4E family member 1B	protein-coding	0.010000	0.547264	
mm_110582.1	chr12	56523160	56523360	-	1	NA	NA	NA	6160	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.005000	0.512438	
mm_80408.1	chr9	77652591	77652791	+	1	NA	NA	NA	15959	NM_172925	244923	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0.000000	0.487562	
mm_4593.1	chr1	178337030	178337230	+	1	NA	NA	NA	654	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.125000	0.711443	
mm_17266.1	chr2	26021487	26021687	-	1	NA	NA	NA	173	NM_133835	98766	Mm.247824	NM_133835	ENSMUSG00000036352	Ubac1	1110033G07Rik|AA407978|GBDR1|Gdbr1|Kpc2|Ubadc1	ubiquitin associated domain containing 1	protein-coding	0.135000	0.756219	
mm_141375.1	chr17	29051943	29052143	-	1	NA	NA	NA	19383	NR_036613	20383	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0.025000	0.427861	-71(GCATATAAAAGA,-,0.00)
mm_110383.1	chr12	40223083	40223283	-	1	NA	NA	NA	6	NM_013562	15982	Mm.168	NM_013562	ENSMUSG00000001627	Ifrd1	Ifnl|PC4|Tis7	interferon-related developmental regulator 1	protein-coding	0.110000	0.641791	
mm_122663.1	chr14	51913296	51913496	-	1	NA	NA	NA	92	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.075000	0.711443	
mm_95907.1	chr11	58205013	58205213	+	1	NA	NA	NA	5557	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.005000	0.452736	
mm_147183.1	chr18	36783002	36783202	-	1	NA	NA	NA	103	NM_008214	15115	Mm.10528	NM_008214	ENSMUSG00000001380	Hars	MMHRS	histidyl-tRNA synthetase	protein-coding	0.065000	0.606965	
mm_160900.1	chr11	75179454	75179654	-	1	NA	NA	NA	-746	NM_027136	246257	Mm.41496	NM_027136	ENSMUSG00000038268	Ovca2	9030414M07Rik	candidate tumor suppressor in ovarian cancer 2	protein-coding	0.020000	0.467662	
mm_121676.1	chr14	12822770	12822970	-	1	NA	NA	NA	209	NM_001042617	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	0.100000	0.711443	
mm_153161.1	chr19	34492841	34493041	-	1	NA	NA	NA	-17806	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.005000	0.427861	87(CTCTTGAAAAGC,-,0.00)
mm_168653.1	chr11	87448532	87448732	+	1	NA	NA	NA	21041	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.090000	0.562189	
mm_10445.1	chr2	14266403	14266603	+	1	NA	NA	NA	5500	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.005000	0.462687	
mm_84346.1	chr9	64253448	64253648	-	1	NA	NA	NA	57	NM_008927	26395	Mm.248907	NM_008927	ENSMUSG00000004936	Map2k1	MAPKK1|MEKK1|Mek1|Prkmk1	mitogen-activated protein kinase kinase 1	protein-coding	0.100000	0.716418	
mm_41706.1	chr5	101764992	101765192	+	1	NA	NA	NA	-38	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.160000	0.815920	
mm_28783.1	chr3	95993611	95993811	-	1	NA	NA	NA	2128	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.005000	0.477612	
mm_12992.1	chr2	90885668	90885868	+	1	NA	NA	NA	-18	NM_026161	67445	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0.070000	0.681592	
mm_151006.1	chr19	46668495	46668695	+	1	NA	NA	NA	4405	NM_007809	13074	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.020000	0.532338	
mm_146506.1	chr18	3337164	3337364	-	1	NA	NA	NA	325	NM_001110851	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.160000	0.766169	
mm_135738.1	chr16	55838571	55838771	-	1	NA	NA	NA	-30	NM_001159395	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.035000	0.557214	-16(CCCTATAAAGGA,+,0.00),-16(CCCTATAAAGGA,-,0.00)
mm_77901.1	chr9	7348701	7348901	+	1	NA	NA	NA	1427	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.015000	0.492537	
mm_169427.1	chr14	53544848	53545048	+	1	NA	NA	NA	708981	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.582090	
mm_1970.1	chr1	86504427	86504627	+	1	NA	NA	NA	-22209	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.065000	0.636816	
mm_139319.1	chr17	48410092	48410292	+	1	NA	NA	NA	192	NM_207219	106821	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	0.090000	0.592040	
mm_100999.1	chr11	8468431	8468631	-	1	NA	NA	NA	196004	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.035000	0.671642	
mm_159758.1	chr5	89527279	89527479	+	1	NA	NA	NA	-50	NM_133192	104443	Mm.447881	NM_133192	ENSMUSG00000035528	Npffr2	Gpr74|HG31|NPFF2	neuropeptide FF receptor 2	protein-coding	0.030000	0.562189	-77(CCTTTTAGGCTC,+,0.00)
mm_112922.1	chr13	20934502	20934702	+	1	NA	NA	NA	138697	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.005000	0.437811	
mm_64811.1	chr7	6709550	6709750	-	1	NA	NA	NA	2890	NR_023846	100169889	Mm.491213	NR_023846		Peg3os	Apeg3|Peg3as	Peg3 opposite strand	ncRNA	0.035000	0.512438	
mm_3414.1	chr1	144317806	144318006	+	1	NA	NA	NA	-68802	NM_015811	50778	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.005000	0.398010	
mm_85579.1	chr9	107289757	107289957	-	1	NA	NA	NA	20	NM_178907	102626	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0.085000	0.651741	9(GGCCCTTTAAGG,-,0.00),11(CCCTTTAAGGTT,+,0.00)
mm_122867.1	chr14	54912974	54913174	-	1	NA	NA	NA	58	NM_021551	59049	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	0.070000	0.681592	
mm_144574.1	chr18	31860423	31860623	+	1	NA	NA	NA	51380	NM_026006	67158	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	0.005000	0.427861	67(GACCATTTAAGG,-,0.00),69(CCATTTAAGGAG,+,0.00)
mm_76042.1	chr8	77517784	77517984	-	1	NA	NA	NA	23	NM_030113	78514	Mm.165974	NM_030113	ENSMUSG00000037148	Arhgap10	A930033B01Rik|PSGAP-m|PSGAP-s	Rho GTPase activating protein 10	protein-coding	0.140000	0.791045	
mm_5606.1	chr1	39577284	39577484	-	1	NA	NA	NA	-37	NM_001033135	67702	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4|OTTMUSG00000026591	ring finger protein 149	protein-coding	0.145000	0.751244	
mm_119747.1	chr14	54138415	54138615	+	1	NA	NA	NA	115414	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.417910	
mm_64899.1	chr7	15959690	15959890	-	1	NA	NA	NA	7745	NM_153068	259300	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0.020000	0.517413	
mm_150753.1	chr19	43839170	43839370	+	1	NA	NA	NA	467	NR_033472	100038628	Mm.212585	NR_033472	ENSMUSG00000025194	Gm10768	ENSMUSG00000074828	predicted gene 10768	ncRNA	0.010000	0.477612	
mm_10439.1	chr2	14229297	14229497	+	1	NA	NA	NA	-17	NM_008625	17533	Mm.2019	NM_008625	ENSMUSG00000026712	Mrc1	AW259686|CD206|MR	mannose receptor, C type 1	protein-coding	0.005000	0.497512	-37(GTCCTTTAAAAG,-,0.00),-36(TCCTTTAAAAGG,-,0.00),-35(CCTTTAAAAGGG,+,0.00)
mm_75116.1	chr8	34529007	34529207	-	1	NA	NA	NA	111209	NR_040706	330734	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	0.010000	0.472637	
mm_63239.1	chr7	126584851	126585051	+	1	NA	NA	NA	-57	NM_138310	171504	Mm.170665	NM_138310	ENSMUSG00000042759	Apobr	Apob-48r|Apob48r	apolipoprotein B receptor	protein-coding	0.020000	0.582090	
mm_86234.1	chr9	120679744	120679944	-	1	NA	NA	NA	102513	NR_073359	76100	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.025000	0.557214	-35(CCCTTTATAAGC,+,0.00),-35(CCCTTTATAAGC,-,0.00),-33(CTTTATAAGCTC,+,0.00)
mm_142468.1	chr17	45601978	45602178	-	1	NA	NA	NA	-11	NM_001177468	653016	Mm.45676	NM_001177468	ENSMUSG00000079471	Gm7325	EG653016|Esgp	predicted gene 7325	protein-coding	0.020000	0.587065	
mm_156955.1	chrX	169988878	169989078	+	1	NA	NA	NA	-10061	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.135000	0.681592	
mm_31451.1	chr4	48615433	48615633	+	1	NA	NA	NA	30340	NM_021436	230157	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0.005000	0.228856	
mm_155618.1	chrX	83222445	83222645	+	1	NA	NA	NA	265379	NM_021898	100502723	Mm.383210	NM_021898	ENSMUSG00000035522	Tsga8	Halap-X|Halapx	testis specific gene A8	protein-coding	0.010000	0.343284	
mm_94286.1	chr11	3992407	3992607	+	1	NA	NA	NA	2574	NM_001177691	53897	Mm.103414	NM_016922	ENSMUSG00000049721	Gal3st1	Cst|Gcst	galactose-3-O-sulfotransferase 1	protein-coding	0.050000	0.616915	
mm_19354.1	chr2	91070115	91070315	-	1	NA	NA	NA	100	NM_026721	68427	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.115000	0.771144	
mm_103283.1	chr11	72214947	72215147	-	1	NA	NA	NA	-91	NM_001163728	75304	Mm.340776	NM_001163728		4930563E22Rik	-	RIKEN cDNA 4930563E22 gene	protein-coding	0.090000	0.592040	
mm_74592.1	chr8	11555163	11555363	-	1	NA	NA	NA	-499	NM_001302458	26356	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.080000	0.681592	
mm_66963.1	chr7	62464373	62464573	-	1	NA	NA	NA	37	NM_013788	27412	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	0.105000	0.691542	
mm_18316.1	chr2	57107981	57108181	-	1	NA	NA	NA	6957	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.005000	0.437811	
mm_246.1	chr1	19212005	19212205	+	1	NA	NA	NA	51	NM_001025305	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.030000	0.487562	-92(CCCTTTAAAGTA,+,0.00),-91(CCTTTAAAGTAC,+,0.00)
mm_107372.1	chr12	32851339	32851539	+	1	NA	NA	NA	27323	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.000000	0.273632	-66(GTTTTTAGAGAG,+,0.00)
mm_139708.1	chr17	57459834	57460034	+	1	NA	NA	NA	85380	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.005000	0.358209	
mm_148754.1	chr19	6058120	6058320	+	1	NA	NA	NA	253	NM_001190436	14109	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	0.080000	0.626866	
mm_95899.1	chr11	58201385	58201585	+	1	NA	NA	NA	1929	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.010000	0.442786	
mm_65058.1	chr7	18798380	18798580	-	1	NA	NA	NA	30	NM_011964	26439	Mm.36878	NM_011964	ENSMUSG00000004542	Psg19	CGM7|Cea-4|Cea4	pregnancy specific glycoprotein 19	protein-coding	0.000000	0.497512	
mm_1429.1	chr1	67177224	67177424	+	1	NA	NA	NA	54297	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.015000	0.378109	35(CATTTTTAAAGG,-,0.00)
mm_31953.1	chr4	86748757	86748957	+	1	NA	NA	NA	302	NM_184088	329877	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	0.120000	0.761194	
mm_112272.1	chr12	114223230	114223430	-	1	NA	NA	NA	246136	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.005000	0.472637	
mm_4343.1	chr1	171856762	171856962	+	1	NA	NA	NA	17165	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.333333	
mm_8607.1	chr1	156035814	156036014	-	1	NA	NA	NA	-122	NM_001160182	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.085000	0.636816	
mm_82289.1	chr9	7661266	7661466	-	1	NA	NA	NA	-30724	NM_010810	17393	Mm.4825	NM_010810	ENSMUSG00000018623	Mmp7	MAT|MMP-7	matrix metallopeptidase 7	protein-coding	0.025000	0.427861	
mm_93767.1	chr10	120201374	120201574	-	1	NA	NA	NA	63	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.125000	0.696517	
mm_149237.1	chr19	10183052	10183252	+	1	NA	NA	NA	264	NM_146094	76267	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0.115000	0.696517	
mm_6436.1	chr1	73997789	73997989	-	1	NA	NA	NA	126558	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.010000	0.457711	
mm_9395.1	chr1	172219486	172219686	-	1	NA	NA	NA	309	NM_009813	12372	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.045000	0.577114	
mm_132114.1	chr16	31663859	31664059	+	1	NA	NA	NA	24	NM_001252434	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.165000	0.800995	
mm_130085.1	chr15	89378883	89379083	-	1	NA	NA	NA	271	NM_001013022	70113	Mm.247273	NM_001013022	ENSMUSG00000047394	Odf3b	2010001J22Rik	outer dense fiber of sperm tails 3B	protein-coding	0.035000	0.597015	
mm_137846.1	chr17	31057645	31057845	+	1	NA	NA	NA	51	NM_009593	11307	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding	0.135000	0.761194	
mm_169691.1	chr15	74825106	74825306	-	1	NA	NA	NA	6130	NM_010416	15202	Mm.17336	NM_010416	ENSMUSG00000068600	Gml2	1700057K19Rik|HemT|Hemt1	glycosylphosphatidylinositol anchored molecule like 2	protein-coding	0.025000	0.497512	
mm_77355.1	chr8	119625829	119626029	-	1	NA	NA	NA	9751	NM_025734	66733	Mm.358699	NM_025734	ENSMUSG00000045246	Kcng4	4921535I01Rik|AW049024|KV6.3|KV6.4	potassium voltage-gated channel, subfamily G, member 4	protein-coding	0.045000	0.572139	
mm_103040.1	chr11	69761844	69762044	-	1	NA	NA	NA	-100	NM_019871	56293	Mm.6211	NM_019871	ENSMUSG00000018776	Slc35g3	Amac1	solute carrier family 35, member G3	protein-coding	0.005000	0.477612	
mm_137023.1	chr17	17867245	17867445	+	1	NA	NA	NA	-12157	NM_008215	15116	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase1	protein-coding	0.010000	0.417910	
mm_109701.1	chr12	113259543	113259743	+	1	NA	NA	NA	73740	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.005000	0.552239	
mm_11901.1	chr2	50296802	50297002	+	1	NA	NA	NA	92	NR_040362	100502624	Mm.382825	NR_040361	ENSMUSG00000085862	Gm13483	OTTMUSG00000012382	predicted gene 13483	ncRNA	0.035000	0.398010	
mm_52421.1	chr6	113471370	113471570	+	1	NA	NA	NA	15	NM_134159	171095	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	0.020000	0.626866	
mm_3426.1	chr1	146774091	146774291	+	1	NA	NA	NA	276504	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.000000	0.223881	
mm_107135.1	chr12	21286294	21286494	+	1	NA	NA	NA	97	NM_018813	54451	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	0.075000	0.557214	
mm_152988.1	chr19	29646384	29646584	-	1	NA	NA	NA	1936	NM_001081213	226090	Mm.267131	NM_146098	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	0.005000	0.398010	18(CTCTTTTTAAAG,-,0.00),20(CTTTTTAAAGCA,+,0.00)
mm_134578.1	chr16	20405426	20405626	-	1	NA	NA	NA	20868	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.010000	0.497512	
mm_21675.1	chr2	164425881	164426081	-	1	NA	NA	NA	17207	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.025000	0.547264	
mm_58836.1	chr7	16830751	16830951	+	1	NA	NA	NA	-12051	NM_001252458	101540	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.020000	0.582090	
mm_48293.1	chr5	138207185	138207385	-	1	NA	NA	NA	12971	NM_177878	330216	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	0.005000	0.388060	
mm_98834.1	chr11	97435274	97435474	+	1	NA	NA	NA	-14786	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.015000	0.477612	
mm_115909.1	chr13	23458338	23458538	-	1	NA	NA	NA	7463	NM_013483	12231	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0.005000	0.432836	
mm_81544.1	chr9	110246126	110246326	+	1	NA	NA	NA	2443	NM_001166273	29873	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding	0.030000	0.582090	
mm_147006.1	chr18	34491417	34491617	-	1	NA	NA	NA	15306	NM_146084	225358	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	0.010000	0.298507	
mm_119280.1	chr14	34311165	34311365	+	1	NA	NA	NA	538	NM_008133	14661	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	0.085000	0.671642	
mm_149386.1	chr19	11383480	11383680	+	1	NA	NA	NA	8092	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.020000	0.442786	
mm_23172.1	chr3	40746569	40746769	+	1	NA	NA	NA	1056	NM_011020	18415	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0.000000	0.268657	
mm_133610.1	chr16	91533972	91534172	+	1	NA	NA	NA	-13022	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.015000	0.502488	
mm_75260.1	chr8	40595069	40595269	-	1	NA	NA	NA	39623	NM_001040699	54384	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.010000	0.427861	
mm_63448.1	chr7	127490323	127490523	+	1	NA	NA	NA	1172	NR_106027	102465642		NR_106027	ENSMUSG00000098267	Mir7060	Gm27515|mmu-mir-7060	microRNA 7060	ncRNA	0.010000	0.517413	
mm_132140.1	chr16	31942394	31942594	+	1	NA	NA	NA	6027	NR_027897	106264	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	0.000000	0.343284	
mm_82707.1	chr9	24314721	24314921	-	1	NA	NA	NA	188319	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.005000	0.388060	
mm_60484.1	chr7	44478367	44478567	+	1	NA	NA	NA	-6050	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.492537	
mm_77166.1	chr8	111689265	111689465	-	1	NA	NA	NA	309	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.020000	0.597015	
mm_59421.1	chr7	27122039	27122239	+	1	NA	NA	NA	2184	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.020000	0.507463	
mm_42780.1	chr5	121398990	121399190	+	1	NA	NA	NA	1108	NM_172722	231713	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	0.025000	0.447761	
mm_36363.1	chr4	76344092	76344292	-	1	NA	NA	NA	-1065906	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.000000	0.477612	
mm_85058.1	chr9	90237911	90238111	-	1	NA	NA	NA	32758	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.020000	0.527363	
mm_6009.1	chr1	58973381	58973581	-	1	NA	NA	NA	1	NM_172406	70827	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	0.050000	0.601990	
mm_74851.1	chr8	24596868	24597068	-	1	NA	NA	NA	-16	NM_008324	15930	Mm.392	NM_008324	ENSMUSG00000031551	Ido1	Ido|Indo	indoleamine 2,3-dioxygenase 1	protein-coding	0.010000	0.487562	-35(CCCTATAAGAGA,-,0.00)
mm_98663.1	chr11	96279293	96279493	+	1	NA	NA	NA	-2512	NM_010461	15416	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	0.025000	0.522388	
mm_97821.1	chr11	82963991	82964191	+	1	NA	NA	NA	-3410	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.005000	0.412935	-30(GAGTTTAAAAAG,-,0.00)
mm_115142.1	chr13	104817097	104817297	+	1	NA	NA	NA	27	NR_135272	67288	Mm.125465	NM_026075	ENSMUSG00000021716	Srek1ip1	3110031B13Rik|AI462702|AV348305|AW121048|Sfrs12ip1|Srsf12ip1	splicing regulatory glutamine/lysine-rich protein 1interacting protein 1	protein-coding	0.075000	0.616915	
mm_88981.1	chr10	81559491	81559691	+	1	NA	NA	NA	147	NM_001276288	14797	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.175000	0.786070	
mm_67991.1	chr7	100863300	100863500	-	1	NA	NA	NA	13	NM_177073	320100	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.155000	0.761194	
mm_120193.1	chr14	61599421	61599621	+	1	NA	NA	NA	9	NM_023233	66597	Mm.491258	NM_023233	ENSMUSG00000035235	Trim13	3110001L12Rik|CAR|LEU5|RNF77|Rfp2	tripartite motif-containing 13	protein-coding	0.100000	0.701493	
mm_15822.1	chr2	164564010	164564210	+	1	NA	NA	NA	1394	NM_026323	67701	Mm.27289	NM_026323	ENSMUSG00000017723	Wfdc2	1600023A02Rik|HE4|WAP5	WAP four-disulfide core domain 2	protein-coding	0.030000	0.507463	
mm_29975.1	chr3	133545221	133545421	-	1	NA	NA	NA	-931	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.030000	0.412935	
mm_8206.1	chr1	138123694	138123894	-	1	NA	NA	NA	51332	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.338308	
mm_85206.1	chr9	96787660	96787860	-	1	NA	NA	NA	22198	NR_102296	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	0.015000	0.482587	
mm_159168.1	chr2	92370844	92371044	-	1	NA	NA	NA	113	NM_001290774	228366	Mm.31158	NM_172670	ENSMUSG00000040434	Large2	5730485C17Rik|AI891893|Gyltl1b|Largel|mKIAA4105	LARGE xylosyl- and glucuronyltransferase 2	protein-coding	0.085000	0.711443	
mm_142773.1	chr17	49796185	49796385	-	1	NA	NA	NA	181113	NM_177052	319991	Mm.441340	NM_177052	ENSMUSG00000023999	Kif6	D130004B10Rik|D130084M03Rik	kinesin family member 6	protein-coding	0.010000	0.437811	
mm_115982.1	chr13	24280672	24280872	-	1	NA	NA	NA	18	NM_001311122	68732	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0.085000	0.537313	
mm_49899.1	chr6	38933978	38934178	+	1	NA	NA	NA	15092	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.005000	0.497512	
mm_135353.1	chr16	43699329	43699529	-	1	NA	NA	NA	-35245	NM_001146325	100043314	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	ENSMUSG00000071552|Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0.010000	0.457711	
mm_67935.1	chr7	100113749	100113949	-	1	NA	NA	NA	7651	NM_133692	67967	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0.020000	0.343284	
mm_33659.1	chr4	133130525	133130725	+	1	NA	NA	NA	-8	NM_153423	242687	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.125000	0.721393	
mm_51825.1	chr6	89294798	89294998	+	1	NA	NA	NA	-9173	NR_131021	75131	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	-	RIKEN cDNA 4930512J16 gene	ncRNA	0.005000	0.522388	
mm_137753.1	chr17	29440033	29440233	+	1	NA	NA	NA	-50912	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.015000	0.532338	
mm_121619.1	chr14	8298000	8298200	-	1	NA	NA	NA	11676	NM_183187	268709	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0.010000	0.532338	
mm_46605.1	chr5	107869038	107869238	-	1	NA	NA	NA	5969	NM_007964	14020	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0.105000	0.686567	55(GGCTCTTTAAGG,-,0.00),57(CTCTTTAAGGCC,+,0.00)
mm_71530.1	chr8	46890411	46890611	+	1	NA	NA	NA	-96376	NM_177304	320981	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.020000	0.482587	
mm_114650.1	chr13	77438808	77439008	+	1	NA	NA	NA	-269782	NM_001163420	68675	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding	0.010000	0.323383	
mm_84497.1	chr9	66901454	66901654	-	1	NA	NA	NA	18151	NM_173413	235442	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.020000	0.472637	4(GTTTTAATAGCC,+,0.00)
mm_41857.1	chr5	104440304	104440504	+	1	NA	NA	NA	4212	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.020000	0.522388	
mm_18907.1	chr2	76723228	76723428	-	1	NA	NA	NA	48013	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.045000	0.527363	
mm_149658.1	chr19	18713102	18713302	+	1	NA	NA	NA	-34	NM_177640	225995	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	0.155000	0.741294	
mm_163376.1	chr12	44438927	44439127	+	1	NA	NA	NA	110142	NM_001146031	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.025000	0.537313	
mm_60813.1	chr7	45684310	45684510	+	1	NA	NA	NA	388	NM_001033356	243967	Mm.291240	NM_001033356	ENSMUSG00000070564	Ntn5	Gm484	netrin 5	protein-coding	0.025000	0.587065	
mm_25553.1	chr3	116007744	116007944	+	1	NA	NA	NA	395	NM_001163515	58193	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	0.085000	0.567164	
mm_40134.1	chr5	35045167	35045367	+	1	NA	NA	NA	3758	NM_019447	54426	Mm.27369	NM_019447	ENSMUSG00000029102	Hgfac	HGFA	hepatocyte growth factor activator	protein-coding	0.030000	0.611940	
mm_151297.1	chr19	55464703	55464903	+	1	NA	NA	NA	148746	NM_001293686	53611	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.015000	0.437811	
mm_69887.1	chr7	141637063	141637263	-	1	NA	NA	NA	16462	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.025000	0.522388	
mm_94060.1	chr10	128368584	128368784	-	1	NA	NA	NA	1353	NM_001081040	210582	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.125000	0.746269	
mm_77550.1	chr8	123254058	123254258	-	1	NA	NA	NA	-37	NM_020497	57247	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	0.165000	0.830846	
mm_12407.1	chr2	70508719	70508919	+	1	NA	NA	NA	0	NM_025744	66748	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	0.030000	0.532338	-24(ACCTCTAAAGGG,-,0.00),-23(CCTCTAAAGGGC,+,0.00)
mm_44557.1	chr5	24602097	24602297	-	1	NA	NA	NA	-195	NM_025891	66993	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.140000	0.751244	
mm_32079.1	chr4	98113616	98113816	+	1	NA	NA	NA	269549	NM_053157	94043	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.015000	0.343284	
mm_143652.1	chr17	79462489	79462689	-	1	NA	NA	NA	15296	NR_033463	74622	Mm.311921	NR_033463		4930429F11Rik	-	RIKEN cDNA 4930429F11 gene	ncRNA	0.010000	0.517413	
mm_155298.1	chrX	61185539	61185739	+	1	NA	NA	NA	-81	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.015000	0.383085	
mm_44292.1	chr5	8422568	8422768	-	1	NA	NA	NA	48	NM_013726	27214	Mm.292470	NM_013726	ENSMUSG00000002297	Dbf4	AA545217|Ask	DBF4 zinc finger	protein-coding	0.150000	0.731343	
mm_67931.1	chr7	99965618	99965818	-	1	NA	NA	NA	14740	NM_175388	108937	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.015000	0.502488	
mm_101943.1	chr11	50209368	50209568	-	1	NA	NA	NA	1352	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.000000	0.363184	-8(CTTTTTCAAGAC,+,0.00)
mm_111663.1	chr12	103336050	103336250	-	1	NA	NA	NA	19851	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.015000	0.537313	
mm_61616.1	chr7	80091237	80091437	+	1	NA	NA	NA	-16080	NR_045695	100859962	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.020000	0.547264	
mm_29707.1	chr3	123385902	123386102	-	1	NA	NA	NA	-12	NM_201638	210529	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	0.075000	0.587065	
mm_109539.1	chr12	111574417	111574617	+	1	NA	NA	NA	7	NM_022801	17169	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	0.125000	0.721393	
mm_138054.1	chr17	33926358	33926558	+	1	NA	NA	NA	-3436	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.040000	0.621891	
mm_101061.1	chr11	9048381	9048581	-	1	NA	NA	NA	-111	NM_001037928	626870	Mm.369429	NM_001037928	ENSMUSG00000040978	Gm11992	OTTMUSG00000005148	predicted gene 11992	protein-coding	0.060000	0.621891	
mm_84269.1	chr9	62665985	62666185	-	1	NA	NA	NA	-11770	NM_176922	319480	Mm.34883	NM_176922	ENSMUSG00000032243	Itga11	4732459H24Rik	integrin alpha 11	protein-coding	0.015000	0.542289	
mm_41629.1	chr5	96997621	96997821	+	1	NA	NA	NA	32	NM_080708	140780	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.190000	0.830846	
mm_165971.1	chr4	100776672	100776872	+	1	NA	NA	NA	93	NM_198037	320508	Mm.151962	NM_198037	ENSMUSG00000028532	Cachd1	1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573	cache domain containing 1	protein-coding	0.120000	0.681592	-3(TCTTTTAAACCT,+,0.00)
mm_144251.1	chr18	10816571	10816771	+	1	NA	NA	NA	-31119	NR_029781	723959		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	0.000000	0.318408	
mm_92188.1	chr10	68101950	68102150	-	1	NA	NA	NA	122452	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.035000	0.407960	
mm_61109.1	chr7	52755308	52755508	+	1	NA	NA	NA	-739692	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	0.010000	0.378109	
mm_32121.1	chr4	99031242	99031442	+	1	NA	NA	NA	388	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.010000	0.427861	-96(CTTTTTATGACC,+,0.00)
mm_162192.1	chrX	112238891	112239091	+	1	NA	NA	NA	-58	NM_001177389	71030	Mm.158538	NM_001177389	ENSMUSG00000079460	4933403O08Rik	-	RIKEN cDNA 4933403O08 gene	protein-coding	0.015000	0.507463	
mm_95673.1	chr11	54082905	54083105	+	1	NA	NA	NA	-13988	NM_019417	30794	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0.020000	0.467662	
mm_158999.1	chr1	153186122	153186322	-	1	NA	NA	NA	225	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.075000	0.656716	
mm_171743.1	chr4	97202930	97203130	-	1	NA	NA	NA	-378913	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.015000	0.507463	-16(CCTCTTATAAGC,+,0.00)
mm_71504.1	chr8	46814057	46814257	+	1	NA	NA	NA	74412	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.020000	0.467662	
mm_172156.1	chr6	4282437	4282637	-	1	NA	NA	NA	-195610	NM_009748	12068	Mm.286457	NM_009748	ENSMUSG00000032757	Bet1	AW555236|Bet-1	Bet1 golgi vesicular membrane trafficking protein	protein-coding	0.045000	0.611940	
mm_71035.1	chr8	33653488	33653688	+	1	NA	NA	NA	350	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.160000	0.776119	
mm_70475.1	chr8	12395191	12395391	+	1	NA	NA	NA	-228	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.135000	0.666667	-85(GCATTTAAACAC,+,0.00)
mm_169012.1	chr13	107414668	107414868	-	1	NA	NA	NA	-55054	NR_045083	105120	Mm.417700	NR_045083		AI197445	-	expressed sequence AI197445	ncRNA	0.025000	0.517413	
mm_23857.1	chr3	83010383	83010583	+	1	NA	NA	NA	2759	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.035000	0.452736	
mm_88544.1	chr10	78574978	78575178	+	1	NA	NA	NA	578	NM_173751	216136	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0.055000	0.597015	
mm_35853.1	chr4	49383688	49383888	-	1	NA	NA	NA	24363	NM_145368	209186	Mm.35071	NM_145368	ENSMUSG00000060317	Acnat2	C730036D15Rik	acyl-coenzyme A amino acid N-acyltransferase 2	protein-coding	0.005000	0.482587	
mm_15767.1	chr2	164317380	164317580	+	1	NA	NA	NA	729	NM_013679	20945	Mm.439686	NM_013679	ENSMUSG00000017000	Svs6	MSVSP99|Svp6	seminal vesicle secretory protein 6	protein-coding	0.020000	0.442786	
mm_119141.1	chr14	31210581	31210781	+	1	NA	NA	NA	2369	NM_009393	21924	Mm.439921	NM_009393	ENSMUSG00000091898	Tnnc1	AI874626|TnC|cTnC|cTnI|tncc	troponin C, cardiac/slow skeletal	protein-coding	0.035000	0.547264	
mm_33951.1	chr4	137424782	137424982	+	1	NA	NA	NA	5638	NM_026419	67868	Mm.297477	NM_026419	ENSMUSG00000023433	Cela3b	0910001F22Rik|2310074F01Rik|AI504000|Ela3|Ela3b	chymotrypsin-like elastase family, member 3B	protein-coding	0.020000	0.542289	
mm_59367.1	chr7	25688009	25688209	+	1	NA	NA	NA	1107	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.095000	0.666667	
mm_108509.1	chr12	83987714	83987914	+	1	NA	NA	NA	-47	NM_134188	171210	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	0.040000	0.517413	
mm_111137.1	chr12	81568161	81568361	-	1	NA	NA	NA	213	NM_020330	56622	Mm.117130	NM_020330	ENSMUSG00000008438	Adam21	Adam31	a disintegrin and metallopeptidase domain 21	protein-coding	0.015000	0.393035	
mm_100945.1	chr11	6528695	6528895	-	1	NA	NA	NA	-35	NR_045893	100041286	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974|OTTMUSG00000005115	small nucleolar RNA host gene 15	ncRNA	0.115000	0.676617	
mm_35850.1	chr4	48473292	48473492	-	1	NA	NA	NA	30	NM_172304	269536	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0.170000	0.721393	
mm_57275.1	chr6	123290459	123290659	-	1	NA	NA	NA	-688	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.328358	
mm_81507.1	chr9	110034631	110034831	+	1	NA	NA	NA	-17290	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.015000	0.447761	
mm_88253.1	chr10	73201426	73201626	+	1	NA	NA	NA	-114821	NR_040646	327768	Mm.417745	NR_040646		A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0.020000	0.502488	
mm_1183.1	chr1	61874188	61874388	+	1	NA	NA	NA	235464	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0.005000	0.283582	
mm_147513.1	chr18	52516518	52516718	-	1	NA	NA	NA	13103	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.015000	0.393035	
mm_61890.1	chr7	89980640	89980840	+	1	NA	NA	NA	236	NM_021876	13626	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	ENSMUSG00000039373|l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	0.145000	0.731343	
mm_161990.1	chr19	33590122	33590322	-	1	NA	NA	NA	89	NM_001013770	381236	Mm.491242	NM_001013770	ENSMUSG00000024766	Lipo3	AI747699|Lipo1	lipase, member O3	protein-coding	0.045000	0.606965	
mm_117458.1	chr13	75835395	75835595	-	1	NA	NA	NA	-4391	NM_053108	93692	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.010000	0.542289	-34(CTCTTTATAAGT,-,0.00)
mm_102473.1	chr11	60031783	60031983	-	1	NA	NA	NA	5122	NM_008819	18618	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	0.010000	0.522388	
mm_38722.1	chr4	145234740	145234940	-	1	NA	NA	NA	12030	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.000000	0.402985	
mm_48372.1	chr5	139478881	139479081	-	1	NA	NA	NA	5510	NM_133349	100494	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.015000	0.572139	
mm_34761.1	chr4	152341464	152341664	+	1	NA	NA	NA	2913	NM_001081376	269610	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding	0.040000	0.517413	
mm_107854.1	chr12	69502463	69502663	+	1	NA	NA	NA	-27013	NR_038060	76062	Mm.380755	NR_038060		5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0.020000	0.582090	
mm_117973.1	chr13	100032080	100032280	-	1	NA	NA	NA	-16541	NM_030026	78038	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	0.000000	0.308458	
mm_30963.1	chr4	33924940	33925140	+	1	NA	NA	NA	408	NM_007726	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding	0.045000	0.651741	
mm_72222.1	chr8	72723187	72723387	+	1	NA	NA	NA	17	NM_009188	20467	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0.100000	0.706468	
mm_167813.1	chr9	123936624	123936824	-	1	NA	NA	NA	31968	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.025000	0.487562	-83(GCCTAGAAAGGC,-,0.00)
mm_84444.1	chr9	66126380	66126580	-	1	NA	NA	NA	-131	NM_026635	68250	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	0.045000	0.477612	
mm_41804.1	chr5	103754071	103754271	+	1	NA	NA	NA	9	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.140000	0.761194	
mm_29416.1	chr3	108972667	108972867	-	1	NA	NA	NA	32210	NM_001078646	66715	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0.005000	0.353234	41(GGCTCTTAAAAA,-,0.00)
mm_169815.1	chr16	20352774	20352974	+	1	NA	NA	NA	-27470	NM_183158	224044	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.020000	0.492537	
mm_91502.1	chr10	37136062	37136262	-	1	NA	NA	NA	2764	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.145000	0.741294	
mm_168764.1	chr1	21201938	21202138	-	1	NA	NA	NA	-16537	NM_001290679	75712	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	0.065000	0.656716	
mm_163543.1	chr13	16910832	16911032	+	1	NA	NA	NA	783833	NM_138654	192136	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	0.005000	0.442786	55(CCTTTAATGACC,+,0.00)
mm_133423.1	chr16	87354127	87354327	+	1	NA	NA	NA	42	NM_026366	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0.110000	0.616915	
mm_37095.1	chr4	116611203	116611403	-	1	NA	NA	NA	-13673	NR_029450	654318	Mm.255685	NR_029450	ENSMUSG00000085408	C530005A16Rik	D930044c15rik	RIKEN cDNA C530005A16 gene	ncRNA	0.005000	0.432836	
mm_13918.1	chr2	120594750	120594950	+	1	NA	NA	NA	14465	NM_025657	66606	Mm.428639	NM_025657	ENSMUSG00000027286	Lrrc57	2810002D13Rik|AA407405	leucine rich repeat containing 57	protein-coding	0.015000	0.452736	
mm_100731.1	chr11	3931879	3932079	-	1	NA	NA	NA	-18	NM_001130459	21452	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	0.035000	0.597015	
mm_114027.1	chr13	52637056	52637256	+	1	NA	NA	NA	40274	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.020000	0.368159	
mm_149920.1	chr19	26607293	26607493	+	1	NA	NA	NA	2233	NM_011416	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.180000	0.751244	
mm_95280.1	chr11	45886336	45886536	+	1	NA	NA	NA	34472	NM_001045520	216705	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.020000	0.417910	
mm_31804.1	chr4	65156381	65156581	+	1	NA	NA	NA	32307	NM_021362	18491	Mm.317854	NM_021362	ENSMUSG00000028370	Pappa	8430414N03Rik|IGFBP-4ase|PAG1|PAPP-A	pregnancy-associated plasma protein A	protein-coding	0.025000	0.497512	
mm_25727.1	chr3	122730128	122730328	+	1	NA	NA	NA	1070	NM_153422	242202	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	0.125000	0.711443	
mm_166558.1	chr6	42597399	42597599	-	1	NA	NA	NA	-127	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.010000	0.442786	
mm_44207.1	chr5	4104317	4104517	-	1	NA	NA	NA	280	NM_020010	13121	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	0.105000	0.691542	
mm_163107.1	chr11	69940994	69941194	+	1	NA	NA	NA	4766	NM_001347634	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.015000	0.562189	
mm_778.1	chr1	44551623	44551823	+	1	NA	NA	NA	52	NM_028450	70676	Mm.133132	NM_027506	ENSMUSG00000056870	Gulp1	3110030A04Rik|5730529O06Rik|CED-6|Ced6|GULP|Gulp-2	GULP, engulfment adaptor PTB domain containing 1	protein-coding	0.075000	0.641791	
mm_157339.1	chrX	36839248	36839448	-	1	NA	NA	NA	-22148	NR_131979	69591	Mm.482947	NR_131979	ENSMUSG00000097468	Mdrl	2310010G23Rik	mitochondrial dynamic related lncRNA	ncRNA	0.030000	0.462687	
mm_157765.1	chrX	73689502	73689702	-	1	NA	NA	NA	16469	NM_001142809	102857	Mm.274553	NM_133987	ENSMUSG00000019558	Slc6a8	AA589632|CRT|CRTR|CT1|CTR5|Creat	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	protein-coding	0.010000	0.502488	-19(GCCTTTAAAAAG,-,0.00),-18(CCTTTAAAAAGC,+,0.00),-17(CTTTAAAAAGCA,+,0.00)
mm_112709.1	chr13	18948281	18948481	+	1	NA	NA	NA	30	NM_001289546	218038	Mm.101650	NM_175007	ENSMUSG00000021314	Amph	-	amphiphysin	protein-coding	0.100000	0.676617	
mm_36591.1	chr4	88438790	88438990	-	1	NA	NA	NA	36	NM_025760	66775	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.040000	0.701493	
mm_97725.1	chr11	80383945	80384145	+	1	NA	NA	NA	766	NM_001130171	22680	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0.015000	0.258706	
mm_47223.1	chr5	121191315	121191515	-	1	NA	NA	NA	-18	NM_011202	19247	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0.175000	0.805970	
mm_21006.1	chr2	152343981	152344181	-	1	NA	NA	NA	-21	NM_175093	228775	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	0.090000	0.686567	
mm_163281.1	chr11	116533888	116534088	-	1	NA	NA	NA	750	NM_025367	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.050000	0.646766	
mm_57449.1	chr6	125131664	125131864	-	1	NA	NA	NA	-119	NM_138747	110109	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	0.125000	0.696517	
mm_7542.1	chr1	124503938	124504138	-	1	NA	NA	NA	-458479	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.343284	
mm_144723.1	chr18	35141835	35142035	+	1	NA	NA	NA	23023	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.005000	0.318408	-64(TTTTTTATAGTA,+,0.00)
mm_93903.1	chr10	126901256	126901456	-	1	NA	NA	NA	15	NM_026858	68876	Mm.276769	NM_026858	ENSMUSG00000025436	Xrcc6bp1	1110068E08Rik|2410012H02Rik|Atp23	XRCC6 binding protein 1	protein-coding	0.150000	0.761194	
mm_108070.1	chr12	73941728	73941928	+	1	NA	NA	NA	-22702	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.005000	0.383085	
mm_300.1	chr1	23291677	23291877	+	1	NA	NA	NA	76	NR_029717	723964		NR_029717	ENSMUSG00000065567	Mir30c-2	Mirn30c-2|mir-30c-2	microRNA 30c-2	ncRNA	0.010000	0.422886	78(AACTCTAAAAGG,-,0.00)
mm_147971.1	chr18	67245730	67245930	-	1	NA	NA	NA	0	NM_172630	225651	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	A530095G11	metallophosphoesterase 1	protein-coding	0.040000	0.417910	
mm_14124.1	chr2	125986681	125986881	+	1	NA	NA	NA	-47877	NM_008008	14178	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0.000000	0.388060	
mm_53172.1	chr6	125345104	125345304	+	1	NA	NA	NA	-4519	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.010000	0.557214	
mm_52068.1	chr6	97806941	97807141	+	1	NA	NA	NA	-17	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.090000	0.706468	
mm_130475.1	chr15	98727931	98728131	-	1	NA	NA	NA	167	NM_024169	66120	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.030000	0.621891	
mm_75461.1	chr8	47750077	47750277	-	1	NA	NA	NA	-36246	NM_172407	70925	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.050000	0.482587	
mm_97843.1	chr11	83065183	83065383	+	1	NA	NA	NA	171	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.010000	0.502488	
mm_86772.1	chr10	20104774	20104974	+	1	NA	NA	NA	-44046	NM_008635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.010000	0.502488	
mm_95863.1	chr11	58009084	58009284	+	1	NA	NA	NA	120	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.175000	0.815920	
mm_19701.1	chr2	103768792	103768992	-	1	NA	NA	NA	-7642	NM_153126	98956	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.025000	0.422886	-70(CCTTTAAGAAAC,+,0.00),-54(GTCCTTATAAGG,-,0.00),-52(CCTTATAAGGAA,+,0.00)
mm_121207.1	chr14	103053490	103053690	+	1	NA	NA	NA	6578	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.030000	0.437811	
mm_123377.1	chr14	63256515	63256715	-	1	NA	NA	NA	-11344	NM_001310610	14463	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0.020000	0.472637	
mm_33797.1	chr4	134925362	134925562	+	1	NA	NA	NA	1837	NM_023665	27981	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.005000	0.512438	
mm_19870.1	chr2	114047394	114047594	-	1	NA	NA	NA	5381	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.015000	0.512438	
mm_151728.1	chr19	4869327	4869527	-	1	NA	NA	NA	8482	NM_013456	11474	Mm.5316	NM_013456	ENSMUSG00000006457	Actn3	-	actinin alpha 3	protein-coding	0.010000	0.492537	
mm_111875.1	chr12	108003528	108003728	-	1	NA	NA	NA	-214	NM_021399	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.040000	0.492537	
mm_98545.1	chr11	95010231	95010431	+	1	NA	NA	NA	452	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.070000	0.621891	
mm_158208.1	chrX	105856458	105856658	-	1	NA	NA	NA	72814	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.010000	0.422886	-45(GCTTTTAGAAGA,+,0.00)
mm_40617.1	chr5	64803422	64803622	+	1	NA	NA	NA	-1	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.110000	0.766169	
mm_110475.1	chr12	51840628	51840828	-	1	NA	NA	NA	-11192	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.030000	0.407960	
mm_53259.1	chr6	127887670	127887870	+	1	NA	NA	NA	148	NM_026743	68498	Mm.174368	NM_026743	ENSMUSG00000030351	Tspan11	1110014F12Rik|AU067806	tetraspanin 11	protein-coding	0.075000	0.711443	
mm_149029.1	chr19	8770964	8771164	+	1	NA	NA	NA	68	NM_025791	66836	Mm.440071	NM_025791	ENSMUSG00000010097	Tmem223	0610006I08Rik	transmembrane protein 223	protein-coding	0.090000	0.611940	
mm_148327.1	chr18	84086163	84086363	-	1	NA	NA	NA	299	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.040000	0.452736	
mm_57794.1	chr6	129275268	129275468	-	1	NA	NA	NA	1	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.020000	0.457711	-35(GAGTATAAAGGC,-,0.00)
mm_90446.1	chr10	127667065	127667265	+	1	NA	NA	NA	42	NR_045171	72243	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0.110000	0.592040	
mm_48534.1	chr5	142904392	142904592	-	1	NA	NA	NA	2262	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.035000	0.542289	
mm_131658.1	chr16	20548555	20548755	+	1	NA	NA	NA	52	NM_013852	27406	Mm.27135	NM_013852	ENSMUSG00000003234	Abcf3	AI326318|AU016058|BB119416	ATP-binding cassette, sub-family F (GCN20), member 3	protein-coding	0.080000	0.601990	
mm_90717.1	chr10	4429075	4429275	-	1	NA	NA	NA	-9	NR_002891	433224	Mm.153111	NR_002891		Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	0.020000	0.457711	
mm_151065.1	chr19	47451000	47451200	+	1	NA	NA	NA	13311	NM_001164717	14218	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.000000	0.512438	-35(TTCTCTAAAAGG,-,0.00)
mm_47996.1	chr5	136136021	136136221	-	1	NA	NA	NA	-24	NM_001347492	72041	Mm.486605	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	0.100000	0.626866	
mm_80654.1	chr9	90054305	90054505	+	1	NA	NA	NA	138	NM_001312649	13036	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.020000	0.597015	
mm_88991.1	chr10	81565694	81565894	+	1	NA	NA	NA	6350	NM_001276288	14797	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.010000	0.616915	
mm_145753.1	chr18	64699913	64700113	+	1	NA	NA	NA	-39013	NM_001001488	54670	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0.025000	0.512438	
mm_100576.1	chr11	120766962	120767162	+	1	NA	NA	NA	17142	NM_009053	19719	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.030000	0.616915	
mm_72505.1	chr8	83748901	83749101	+	1	NA	NA	NA	-7690	NM_001163031	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.005000	0.537313	
mm_86767.1	chr10	19934089	19934289	+	1	NA	NA	NA	-337	NM_008580	26408	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.165000	0.771144	
mm_63615.1	chr7	128237296	128237496	+	1	NA	NA	NA	39	NM_146205	233912	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0.075000	0.587065	
mm_3744.1	chr1	155558261	155558461	+	1	NA	NA	NA	241	NM_026683	72482	Mm.288249	NM_026683	ENSMUSG00000033701	Acbd6	0610010G04Rik|2610100E10Rik	acyl-Coenzyme A binding domain containing 6	protein-coding	0.160000	0.771144	
mm_5351.1	chr1	25228702	25228902	-	1	NA	NA	NA	49152	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding	0.080000	0.601990	
mm_102605.1	chr11	62410813	62411013	-	1	NA	NA	NA	27602	NM_001252313	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.015000	0.447761	
mm_90150.1	chr10	118141808	118142008	+	1	NA	NA	NA	121	NM_010785	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.140000	0.741294	
mm_44715.1	chr5	30945559	30945759	-	1	NA	NA	NA	-179	NM_026770	68567	Mm.45127	NM_026770	ENSMUSG00000029161	Cgref1	1110004G24Rik|AW045201|Cgr11	cell growth regulator with EF hand domain 1	protein-coding	0.020000	0.547264	
mm_49678.1	chr6	32050194	32050394	+	1	NA	NA	NA	6	NM_029587	76382	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0.005000	0.482587	
mm_70151.1	chr7	143460630	143460830	-	1	NA	NA	NA	320	NM_009876	12577	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.080000	0.636816	
mm_87694.1	chr10	59582252	59582452	+	1	NA	NA	NA	34340	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.000000	0.407960	
mm_80988.1	chr9	103227860	103228060	+	1	NA	NA	NA	2326	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.055000	0.557214	
mm_83603.1	chr9	48597344	48597544	-	1	NA	NA	NA	7679	NM_001311062	18113	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0.005000	0.492537	
mm_133533.1	chr16	91043459	91043659	+	1	NA	NA	NA	820	NM_026110	67367	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.030000	0.547264	
mm_47941.1	chr5	135351337	135351537	-	1	NA	NA	NA	-1393	NM_001277891	94244	Mm.26037	NM_033571	ENSMUSG00000040013	Fkbp6	1700008G22Rik|36kDa|AU017274|D5Ertd724e|FKBP-36|FKBP-6	FK506 binding protein 6	protein-coding	0.010000	0.447761	
mm_163085.1	chr11	69408602	69408802	-	1	NA	NA	NA	4973	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.035000	0.542289	
mm_132703.1	chr16	43363829	43364029	+	1	NA	NA	NA	56267	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.010000	0.522388	
mm_165719.1	chr3	101424024	101424224	+	1	NA	NA	NA	46999	NM_207205	78908	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	0.010000	0.472637	
mm_69165.1	chr7	127213372	127213572	-	1	NA	NA	NA	1864	NM_016754	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.020000	0.517413	
mm_148504.1	chr19	4204101	4204301	+	1	NA	NA	NA	-2598	NM_011237	19367	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0.005000	0.542289	
mm_29440.1	chr3	110142903	110143103	-	1	NA	NA	NA	469	NM_001163348	80883	Mm.39262	NM_030699	ENSMUSG00000059857	Ntng1	A930010C08Rik|AI853992|Lmnt1	netrin G1	protein-coding	0.045000	0.597015	
mm_131690.1	chr16	20681674	20681874	+	1	NA	NA	NA	-2482	NR_028530	100217430		NR_028530		Snord66	MBII-142|snoRNA142	small nucleolar RNA, C/D box 66	snoRNA	0.020000	0.472637	
mm_2922.1	chr1	132114810	132115010	+	1	NA	NA	NA	24775	NM_008795	18557	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.020000	0.587065	
mm_163941.1	chr14	51145429	51145629	-	1	NA	NA	NA	1238	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.005000	0.517413	
mm_2972.1	chr1	133068406	133068606	+	1	NA	NA	NA	22494	NM_001099276	240752	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphoinositide-3-kinase, class 2, beta polypeptide	protein-coding	0.005000	0.557214	-88(GGCTTTTTAAAG,-,0.00),-87(GCTTTTTAAAGG,-,0.00),-86(CTTTTTAAAGGC,+,0.00),-48(CTATTTATAGGG,+,0.00)
mm_121102.1	chr14	100213079	100213279	+	1	NA	NA	NA	-63383	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.020000	0.447761	
mm_136742.1	chr17	8340908	8341108	+	1	NA	NA	NA	269	NM_178774	320111	Mm.442510	NM_178774	ENSMUSG00000055945	Prr18	9630019K15Rik	proline rich 18	protein-coding	0.110000	0.736318	
mm_113583.1	chr13	40886708	40886908	+	1	NA	NA	NA	50	NM_008105	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.015000	0.502488	40(TCTTTTAGATCC,+,0.00)
mm_103925.1	chr11	83647889	83648089	-	1	NA	NA	NA	1389	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.005000	0.343284	
mm_135167.1	chr16	35928755	35928955	-	1	NA	NA	NA	-9615	NM_030253	80285	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.010000	0.482587	
mm_62687.1	chr7	110029654	110029854	+	1	NA	NA	NA	11329	NM_181517	233726	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	0.020000	0.368159	
mm_97514.1	chr11	78499611	78499811	+	1	NA	NA	NA	591	NM_011707	22370	Mm.3667	NM_011707	ENSMUSG00000017344	Vtn	AI256434|Vn	vitronectin	protein-coding	0.035000	0.592040	
mm_91472.1	chr10	34207352	34207552	-	1	NA	NA	NA	99	NM_172508	212898	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.085000	0.711443	
mm_3781.1	chr1	156633937	156634137	+	1	NA	NA	NA	40302	NM_023141	30935	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.005000	0.333333	
mm_58782.1	chr7	16098480	16098680	+	1	NA	NA	NA	-63	NM_025898	108124	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	0.110000	0.711443	
mm_61157.1	chr7	58709762	58709962	+	1	NA	NA	NA	51660	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.000000	0.273632	
mm_41076.1	chr5	87673142	87673342	+	1	NA	NA	NA	7034	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.005000	0.398010	
mm_171054.1	chr3	103833207	103833407	+	1	NA	NA	NA	611	NM_001142960	229672	Mm.297245	NM_001142959	ENSMUSG00000044165	Bcl2l15	Bfk|Gm566	BCLl2-like 15	protein-coding	0.020000	0.517413	
mm_19524.1	chr2	94156092	94156292	-	1	NA	NA	NA	1717	NM_019657	56348	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0.005000	0.363184	
mm_18831.1	chr2	74715895	74716095	-	1	NA	NA	NA	135	NR_027899	73429	Mm.443313	NR_027899		Hoxd3os1	1700064D17Rik|1700109F18Rik	homeobox D3, opposite strand 1	ncRNA	0.065000	0.636816	
mm_5784.1	chr1	51746962	51747162	-	1	NA	NA	NA	168916	NM_001290982	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.060000	0.547264	
mm_91986.1	chr10	61784362	61784562	-	1	NA	NA	NA	-598	NM_207000	404634	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	0.030000	0.402985	
mm_171570.1	chr4	147351856	147352056	+	1	NA	NA	NA	176090	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.040000	0.512438	-30(GTGTATATAAGC,-,0.00)
mm_27805.1	chr3	75956529	75956729	-	1	NA	NA	NA	320	NM_175193	73124	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.090000	0.656716	
mm_142664.1	chr17	47713246	47713446	-	1	NA	NA	NA	-11350	NR_045913	100126242	Mm.392746	NR_045912	ENSMUSG00000086930	Frs3os	4930417B13Rik|Gm14873|OTTMUSG00000018358	fibroblast growth factor receptor substrate 3, opposite strand	ncRNA	0.035000	0.487562	
mm_117941.1	chr13	99434559	99434759	-	1	NA	NA	NA	-21833	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.025000	0.522388	
mm_69703.1	chr7	140082129	140082329	-	1	NA	NA	NA	72	NM_001190386	68566	Mm.44241	NM_026769	ENSMUSG00000025468	Caly	0710001P07Rik|1110004A22Rik|Calcyon|Drd1ip	calcyon neuron-specific vesicular protein	protein-coding	0.030000	0.572139	
mm_38926.1	chr4	150187294	150187494	-	1	NA	NA	NA	13741	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.020000	0.497512	
mm_163494.1	chr12	109723292	109723492	+	1	NA	NA	NA	-66	NR_029915	723934		NR_029915	ENSMUSG00000105853	Mir376b	Mirn376b|mir-376b	microRNA 376b	ncRNA	0.020000	0.467662	68(GTATTTAAAAGG,-,0.00)
mm_153184.1	chr19	34499103	34499303	-	1	NA	NA	NA	-24068	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.010000	0.368159	
mm_122812.1	chr14	54577495	54577695	-	1	NA	NA	NA	66	NM_010590	16475	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	0.095000	0.671642	
mm_91027.1	chr10	17924318	17924518	-	1	NA	NA	NA	23649	NM_001033432	380629	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.010000	0.338308	
mm_35049.1	chr4	6275532	6275732	-	1	NA	NA	NA	-1	NM_007824	13122	Mm.57029	NM_007824	ENSMUSG00000028240	Cyp7a1	-	cytochrome P450, family 7, subfamily a, polypeptide 1	protein-coding	0.010000	0.442786	-34(GCATATATAAAG,-,0.00)
mm_162519.1	chr1	156997053	156997253	-	1	NA	NA	NA	-57527	NM_023884	78255	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0.045000	0.507463	
mm_10173.1	chr2	4559785	4559985	+	1	NA	NA	NA	131	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.035000	0.587065	
mm_153105.1	chr19	32757230	32757430	-	1	NA	NA	NA	-247	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.110000	0.696517	
mm_99491.1	chr11	102773997	102774197	+	1	NA	NA	NA	12662	NM_001110778	11488	Mm.89854	NM_009613	ENSMUSG00000020926	Adam11	AW060611|Mdc	a disintegrin and metallopeptidase domain 11	protein-coding	0.075000	0.621891	
mm_123609.1	chr14	68120090	68120290	-	1	NA	NA	NA	-3562	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.015000	0.477612	
mm_24052.1	chr3	87906523	87906723	+	1	NA	NA	NA	-227	NM_001331051	15191	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0.150000	0.721393	
mm_173350.1	chrY	90813437	90813637	+	1	NA	NA	NA	25869	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.452736	
mm_88968.1	chr10	81396155	81396355	+	1	NA	NA	NA	3191	NM_001099917	72273	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.020000	0.373134	13(TCTTTTATGGAC,+,0.00)
mm_88034.1	chr10	67528284	67528484	+	1	NA	NA	NA	-9485	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.020000	0.507463	
mm_117417.1	chr13	74317167	74317367	-	1	NA	NA	NA	59	NM_011051	18570	Mm.24254	NM_011051	ENSMUSG00000021576	Pdcd6	AV299538|Alg2|MA-3|PS2|alg-2	programmed cell death 6	protein-coding	0.065000	0.651741	
mm_128318.1	chr15	37972590	37972790	-	1	NA	NA	NA	-11635	NM_199476	382985	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.015000	0.407960	
mm_19622.1	chr2	102812660	102812860	-	1	NA	NA	NA	88905	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.000000	0.447761	-75(CCTCAAAAAGCC,+,0.00)
mm_25246.1	chr3	103968261	103968461	+	1	NA	NA	NA	-45	NR_030676	100125931	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	0.140000	0.751244	
mm_94646.1	chr11	16917125	16917325	+	1	NA	NA	NA	34057	NR_110421	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.010000	0.432836	
mm_23939.1	chr3	84473835	84474035	+	1	NA	NA	NA	5556	NM_001205355	229474	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0.020000	0.572139	
mm_6756.1	chr1	84053336	84053536	-	1	NA	NA	NA	165525	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.323383	
mm_2092.1	chr1	87701097	87701297	+	1	NA	NA	NA	-54814	NM_029846	77040	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.020000	0.542289	
mm_130282.1	chr15	96953423	96953623	-	1	NA	NA	NA	102433	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.040000	0.567164	
mm_46896.1	chr5	114091176	114091376	-	1	NA	NA	NA	104	NM_026805	68666	Mm.63584	NM_026805	ENSMUSG00000042078	Svop	1110030H18Rik|AI415691|msvop	SV2 related protein	protein-coding	0.070000	0.686567	
mm_151157.1	chr19	53185705	53185905	+	1	NA	NA	NA	41808	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.020000	0.497512	
mm_14136.1	chr2	126035833	126036033	+	1	NA	NA	NA	1275	NM_008008	14178	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0.030000	0.512438	
mm_73111.1	chr8	94745585	94745785	+	1	NA	NA	NA	1	NM_009137	20299	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	0.020000	0.512438	
mm_62545.1	chr7	102340611	102340811	+	1	NA	NA	NA	72887	NM_009287	20866	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0.000000	0.412935	
mm_139906.1	chr17	70871829	70872029	+	1	NA	NA	NA	-18397	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.010000	0.417910	6(TCCCATATAAGA,-,0.00)
mm_88468.1	chr10	77581657	77581857	+	1	NA	NA	NA	-10	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.115000	0.686567	
mm_124678.1	chr15	6429349	6429549	+	1	NA	NA	NA	-15884	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.025000	0.482587	
mm_32739.1	chr4	116611237	116611437	+	1	NA	NA	NA	-13707	NR_029450	654318	Mm.255685	NR_029450	ENSMUSG00000085408	C530005A16Rik	D930044c15rik	RIKEN cDNA C530005A16 gene	ncRNA	0.010000	0.407960	
mm_124064.1	chr14	78331963	78332163	-	1	NA	NA	NA	-24020	NM_011613	21943	Mm.249221	NM_011613	ENSMUSG00000022015	Tnfsf11	Ly109l|ODF|OPGL|RANKL|Trance	tumor necrosis factor (ligand) superfamily, member 11	protein-coding	0.005000	0.412935	
mm_47491.1	chr5	124006035	124006235	-	1	NA	NA	NA	9283	NR_105999	102465625		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.030000	0.587065	
mm_1795.1	chr1	79776156	79776356	+	1	NA	NA	NA	238	NM_001081210	69163	Mm.238455	NM_001081210	ENSMUSG00000026248	Mrpl44	1810030E18Rik|5730593H20Rik|AI463302	mitochondrial ribosomal protein L44	protein-coding	0.110000	0.701493	
mm_128655.1	chr15	59652808	59653008	-	1	NA	NA	NA	4254	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.030000	0.507463	
mm_22541.1	chr3	8767046	8767246	+	1	NA	NA	NA	-100108	NM_010423	15213	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.060000	0.562189	
mm_153084.1	chr19	32388315	32388515	-	1	NA	NA	NA	39	NM_144792	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.150000	0.766169	
mm_166410.1	chr5	137150389	137150589	-	1	NA	NA	NA	-34282	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.477612	
mm_75943.1	chr8	71566547	71566747	-	1	NA	NA	NA	2	NM_145598	234404	Mm.213208	NM_145598	ENSMUSG00000034829	Nxnl1	A930031O08Rik|RdCVF|Txnl6	nucleoredoxin-like 1	protein-coding	0.010000	0.562189	
mm_131836.1	chr16	22960788	22960988	+	1	NA	NA	NA	9816	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.005000	0.502488	
mm_144416.1	chr18	20962584	20962784	+	1	NA	NA	NA	18059	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.035000	0.398010	
mm_53761.1	chr6	145746694	145746894	+	1	NA	NA	NA	-61589	NM_027760	71323	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.165000	0.830846	
mm_45225.1	chr5	53421212	53421412	-	1	NA	NA	NA	-134467	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.005000	0.482587	
mm_136190.1	chr16	89122433	89122633	-	1	NA	NA	NA	-58531	NM_001276278	68637	Mm.384089	NM_001276278	ENSMUSG00000068073	1110025L11Rik	-	RIKEN cDNA 1110025L11 gene	protein-coding	0.005000	0.497512	-33(GGATATAAAAGG,-,0.00)
mm_67094.1	chr7	68915903	68916103	-	1	NA	NA	NA	-166765	NM_025549	66412	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.035000	0.512438	72(CCCTTGATAAGG,-,0.00)
mm_101897.1	chr11	49173667	49173867	-	1	NA	NA	NA	13322	NM_172793	237754	Mm.130787	NM_172793	ENSMUSG00000040283	Btnl9	B430208I01|Btn3|D330012D11Rik	butyrophilin-like 9	protein-coding	0.020000	0.437811	84(CCCTTTAGAACC,+,0.00)
mm_162854.1	chr10	88740076	88740276	+	1	NA	NA	NA	8762	NM_025859	104303	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0.005000	0.502488	
mm_126385.1	chr15	80173493	80173693	+	1	NA	NA	NA	-128	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.180000	0.870647	
mm_59303.1	chr7	25219259	25219459	+	1	NA	NA	NA	500	NM_207677	67379	Mm.280594	NM_026117	ENSMUSG00000054499	Dedd2	2410050E11Rik|FLAME-3	death effector domain-containing DNA binding protein 2	protein-coding	0.070000	0.592040	
mm_24496.1	chr3	92373784	92373984	+	1	NA	NA	NA	-31	NR_003548	20761	Mm.57083	NR_003548	ENSMUSG00000046203	Sprr2g	-	small proline-rich protein 2G	pseudo	0.005000	0.442786	-1(TTCTATAAAGAG,-,0.00)
mm_165606.1	chr3	51122621	51122821	+	1	NA	NA	NA	-101726	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.005000	0.472637	
mm_6400.1	chr1	72861756	72861956	-	1	NA	NA	NA	13009	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.005000	0.487562	
mm_133448.1	chr16	88225431	88225631	+	1	NA	NA	NA	64727	NM_146072	14805	Mm.5134	NM_010348	ENSMUSG00000022935	Grik1	A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1	glutamate receptor, ionotropic, kainate 1	protein-coding	0.010000	0.452736	
mm_143558.1	chr17	74173823	74174023	-	1	NA	NA	NA	120940	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.000000	0.462687	
mm_32594.1	chr4	111720094	111720294	+	1	NA	NA	NA	184	NM_026470	67946	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	0.110000	0.726368	
mm_17078.1	chr2	22874938	22875138	-	1	NA	NA	NA	-20484	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.055000	0.701493	
mm_157408.1	chrX	38440084	38440284	-	1	NA	NA	NA	16276	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.015000	0.368159	
mm_39436.1	chr5	16553805	16554005	+	1	NA	NA	NA	4	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.035000	0.532338	
mm_72448.1	chr8	83165534	83165734	+	1	NA	NA	NA	282	NM_027758	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.140000	0.716418	
mm_28873.1	chr3	97703585	97703785	-	1	NA	NA	NA	-13123	NR_106084	102466229		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	0.015000	0.517413	
mm_162566.1	chr1	172513906	172514106	-	1	NA	NA	NA	-7124	NM_027972	71870	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	0.020000	0.527363	19(CCCTTTCAAGAC,+,0.00)
mm_11987.1	chr2	55436294	55436494	+	1	NA	NA	NA	424	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.060000	0.671642	
mm_17570.1	chr2	30350770	30350970	-	1	NA	NA	NA	8446	NM_139302	227700	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	0.005000	0.547264	
mm_142744.1	chr17	48418078	48418278	-	1	NA	NA	NA	8178	NM_207219	106821	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	0.005000	0.452736	-33(CCCCTTAAAAGC,-,0.00),-32(CCCTTAAAAGCA,+,0.00)
mm_132622.1	chr16	38828816	38829016	+	1	NA	NA	NA	-167	NM_029042	74663	Mm.50263	NM_029042	ENSMUSG00000022798	4930435E12Rik	TSCPA	RIKEN cDNA 4930435E12 gene	protein-coding	0.005000	0.497512	
mm_153630.1	chr19	44021576	44021776	-	1	NA	NA	NA	7571	NM_001001446	226143	Mm.329866	NM_001001446	ENSMUSG00000025197	Cyp2c44	AW107714|BC034834|b2b386Clo	cytochrome P450, family 2, subfamily c, polypeptide 44	protein-coding	0.020000	0.482587	
mm_36610.1	chr4	89274480	89274680	-	1	NA	NA	NA	7612	NM_001040654	12578	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin-dependent kinase inhibitor 2A	protein-coding	0.025000	0.447761	-88(GGCTTTAAAAAA,-,0.00)
mm_95278.1	chr11	45856146	45856346	+	1	NA	NA	NA	4282	NM_001045520	216705	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.025000	0.472637	
mm_130665.1	chr15	100669421	100669621	-	1	NA	NA	NA	-21	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.050000	0.661692	
mm_111066.1	chr12	80115201	80115401	-	1	NA	NA	NA	-2288	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.055000	0.552239	
mm_10635.1	chr2	20339490	20339690	+	1	NA	NA	NA	49677	NM_001081006	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.015000	0.477612	
mm_6336.1	chr1	71628346	71628546	-	1	NA	NA	NA	24788	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.015000	0.477612	
mm_30734.1	chr4	13827845	13828045	+	1	NA	NA	NA	43163	NM_009822	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.005000	0.427861	
mm_50992.1	chr6	63256270	63256470	+	1	NA	NA	NA	-487	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.115000	0.701493	
mm_77941.1	chr9	7355752	7355952	+	1	NA	NA	NA	8478	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.015000	0.417910	
mm_36481.1	chr4	82882720	82882920	-	1	NA	NA	NA	2331	NM_009887	12622	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	0.030000	0.532338	
mm_157306.1	chrX	20931147	20931347	-	1	NA	NA	NA	308	NM_008823	18636	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	0.005000	0.552239	
mm_53283.1	chr6	128887489	128887689	+	1	NA	NA	NA	2	NM_020257	93675	Mm.391513	NM_020257	ENSMUSG00000030365	Clec2i	Clr-g|Clrg|Dcl1|LCL-1|OCILrP2	C-type lectin domain family 2, member i	protein-coding	0.015000	0.467662	
mm_171229.1	chr3	66233045	66233245	-	1	NA	NA	NA	13258	NM_008987	19288	Mm.276776	NM_008987	ENSMUSG00000027832	Ptx3	AI607804|TSG-14	pentraxin related gene	protein-coding	0.060000	0.646766	
mm_73212.1	chr8	95806878	95807078	+	1	NA	NA	NA	148	NR_015574	319960	Mm.386996	NR_015574	ENSMUSG00000074136	4930513N10Rik	-	RIKEN cDNA 4930513N10 gene	ncRNA	0.115000	0.746269	
mm_97653.1	chr11	79512084	79512284	+	1	NA	NA	NA	-8102	NM_019409	18377	Mm.93335	NM_019409	ENSMUSG00000049612	Omg	-	oligodendrocyte myelin glycoprotein	protein-coding	0.000000	0.298507	
mm_124476.1	chr14	121460032	121460232	-	1	NA	NA	NA	45122	NM_053079	56643	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	0.000000	0.537313	
mm_43843.1	chr5	143180842	143181042	+	1	NA	NA	NA	-75	NM_177880	330228	Mm.255752	NM_177880	ENSMUSG00000029586	Spdye4b	4933411G11Rik	speedy/RINGO cell cycle regulator family, member E4B	protein-coding	0.040000	0.567164	
mm_76345.1	chr8	84726425	84726625	-	1	NA	NA	NA	25068	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.045000	0.606965	
mm_12782.1	chr2	79330734	79330934	+	1	NA	NA	NA	75408	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.000000	0.303483	
mm_106017.1	chr11	116020461	116020661	-	1	NA	NA	NA	3943	NM_008211	15081	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0.000000	0.437811	
mm_84032.1	chr9	57765021	57765221	-	1	NA	NA	NA	739	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.115000	0.771144	
mm_139665.1	chr17	57408529	57408729	+	1	NA	NA	NA	49943	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.393035	
mm_72136.1	chr8	71922723	71922923	+	1	NA	NA	NA	-2	NM_133358	170938	Mm.480419	NM_133358	ENSMUSG00000066880	Zfp617	Zfps11-6	zinc finger protein 617	protein-coding	0.070000	0.621891	
mm_75256.1	chr8	40511610	40511810	-	1	NA	NA	NA	44	NM_001271543	18983	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0.160000	0.786070	
mm_40052.1	chr5	33995920	33996120	+	1	NA	NA	NA	36	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.115000	0.701493	
mm_148395.1	chr19	3767794	3767994	+	1	NA	NA	NA	473	NM_001167885	225888	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0.125000	0.676617	
mm_52898.1	chr6	122654506	122654706	+	1	NA	NA	NA	28182	NM_139218	73708	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.010000	0.417910	-38(CTCTTTAAAAGA,-,0.00),-37(TCTTTAAAAGAG,+,0.00)
mm_167934.1	chrX	106254098	106254298	+	1	NA	NA	NA	1174	NM_001033424	331491	Mm.426150	NM_001033424	ENSMUSG00000073012	Fnd3c2	5031408O05Rik|Gm775	fibronectin type III domain containing 3C2	protein-coding	0.005000	0.447761	
mm_128144.1	chr15	31530934	31531134	-	1	NA	NA	NA	3	NM_172606	223455	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0.185000	0.786070	
mm_135185.1	chr16	36071647	36071847	-	1	NA	NA	NA	87	NM_001159421	381045	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	0.085000	0.631841	
mm_29993.1	chr3	135546433	135546633	-	1	NA	NA	NA	60922	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.005000	0.467662	
mm_69464.1	chr7	133602089	133602289	-	1	NA	NA	NA	-74	NM_028654	73808	Mm.159067	NM_028654	ENSMUSG00000030976	Tex36	4930404H21Rik	testis expressed 36	protein-coding	0.005000	0.512438	
mm_26826.1	chr3	10346015	10346215	-	1	NA	NA	NA	5202	NM_001331015	66361	Mm.371617	NM_025512	ENSMUSG00000039795	Zfand1	2310008M20Rik|AW048890	zinc finger, AN1-type domain 1	protein-coding	0.020000	0.462687	
mm_18728.1	chr2	72971280	72971480	-	1	NA	NA	NA	7901	NM_001098425	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.005000	0.422886	-63(AACTATAAAAGA,-,0.00)
mm_118356.1	chr13	115101440	115101640	-	1	NA	NA	NA	424	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.060000	0.636816	
mm_51032.1	chr6	65525265	65525465	+	1	NA	NA	NA	-65033	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.020000	0.427861	
mm_29373.1	chr3	108722031	108722231	-	1	NA	NA	NA	168	NM_029522	76123	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0.125000	0.746269	
mm_134812.1	chr16	25045115	25045315	-	1	NA	NA	NA	-14424	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.010000	0.442786	
mm_38259.1	chr4	136880179	136880379	-	1	NA	NA	NA	5898	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.010000	0.557214	
mm_87686.1	chr10	59346070	59346270	+	1	NA	NA	NA	22874	NM_001316370	18451	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.005000	0.383085	
mm_86017.1	chr9	112235069	112235269	-	1	NA	NA	NA	-328	NM_001177619	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.055000	0.666667	
mm_29307.1	chr3	107943306	107943506	-	1	NA	NA	NA	343	NM_008184	14867	Mm.458154	NM_008184	ENSMUSG00000068762	Gstm6	-	glutathione S-transferase, mu 6	protein-coding	0.025000	0.562189	
mm_156818.1	chrX	164139284	164139484	+	1	NA	NA	NA	42	NM_001130513	70008	Mm.13451	NM_027286	ENSMUSG00000015405	Ace2	2010305L05Rik	angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	protein-coding	0.010000	0.457711	-26(CCATTTAAAGTG,+,0.00)
mm_170624.1	chr19	7268128	7268328	+	1	NA	NA	NA	-51	NM_001320554	104383	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.085000	0.751244	
mm_144583.1	chr18	31931395	31931595	+	1	NA	NA	NA	-12	NM_144862	225341	Mm.24551	NM_144862	ENSMUSG00000024395	Lims2	PINCH2	LIM and senescent cell antigen like domains 2	protein-coding	0.070000	0.631841	
mm_132455.1	chr16	36071556	36071756	+	1	NA	NA	NA	-4	NM_198645	381045	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	0.120000	0.701493	
mm_32382.1	chr4	106560933	106561133	+	1	NA	NA	NA	-5	NM_053272	74754	Mm.133370	NM_053272	ENSMUSG00000034926	Dhcr24	2310076D10Rik|5830417J06Rik|mKIAA0018	24-dehydrocholesterol reductase	protein-coding	0.150000	0.751244	
mm_162320.1	chr1	39238443	39238643	+	1	NA	NA	NA	44271	NM_008719	18143	Mm.2380	NM_008719	ENSMUSG00000026077	Npas2	MOP4|bHLHe9	neuronal PAS domain protein 2	protein-coding	0.010000	0.537313	
mm_150055.1	chr19	29382424	29382624	+	1	NA	NA	NA	15086	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.010000	0.497512	
mm_141533.1	chr17	31849911	31850111	-	1	NA	NA	NA	5781	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.060000	0.616915	
mm_22229.1	chr2	174432335	174432535	-	1	NA	NA	NA	6604	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.010000	0.447761	
mm_123220.1	chr14	59552426	59552626	-	1	NA	NA	NA	45433	NM_001168537	71891	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0.010000	0.422886	
mm_1222.1	chr1	62738311	62738511	+	1	NA	NA	NA	35094	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.030000	0.552239	
mm_61400.1	chr7	73375724	73375924	+	1	NA	NA	NA	-50	NR_040324	319783	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.105000	0.751244	
mm_79659.1	chr9	59656709	59656909	+	1	NA	NA	NA	441	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.040000	0.572139	
mm_152800.1	chr19	21652657	21652857	-	1	NA	NA	NA	34	NM_025423	66206	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0.050000	0.532338	
mm_60840.1	chr7	45741941	45742141	+	1	NA	NA	NA	-16225	NM_027055	69363	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	0.035000	0.572139	
mm_42940.1	chr5	122989494	122989694	+	1	NA	NA	NA	240	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.025000	0.542289	
mm_105904.1	chr11	114983010	114983210	-	1	NA	NA	NA	6776	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.005000	0.462687	
mm_141231.1	chr17	27426407	27426607	-	1	NA	NA	NA	68410	NR_106077	102466228		NR_106077	ENSMUSG00000106215	Mir7218	mmu-mir-7218	microRNA 7218	ncRNA	0.025000	0.592040	
mm_98967.1	chr11	98682495	98682695	+	1	NA	NA	NA	41	NM_009439	22123	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0.080000	0.651741	
mm_39608.1	chr5	24124731	24124931	+	1	NA	NA	NA	5137	NR_037304	100499521		NR_037304	ENSMUSG00000092880	Mir3471-1	mmu-mir-3471-1	microRNA 3471-1	ncRNA	0.005000	0.378109	-58(CTATATATAGCC,+,0.00)
mm_117369.1	chr13	71960250	71960450	-	1	NA	NA	NA	3373	NM_010573	16371	Mm.316056	NM_010573	ENSMUSG00000060969	Irx1	-	Iroquois related homeobox 1 (Drosophila)	protein-coding	0.040000	0.527363	
mm_168232.1	chr10	8156452	8156652	-	1	NA	NA	NA	-200429	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.025000	0.527363	
mm_27560.1	chr3	58525795	58525995	-	1	NA	NA	NA	-11	NM_030685	28146	Mm.29702	NM_030685	ENSMUSG00000027808	Serp1	D3Ucla1|Ramp4	stress-associated endoplasmic reticulum protein 1	protein-coding	0.135000	0.716418	
mm_104444.1	chr11	95010209	95010409	-	1	NA	NA	NA	430	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.060000	0.601990	
mm_48851.1	chr5	149619864	149620064	-	1	NA	NA	NA	16351	NM_013559	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.025000	0.472637	
mm_27457.1	chr3	52104813	52105013	-	1	NA	NA	NA	93	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.115000	0.676617	
mm_105679.1	chr11	107716317	107716517	-	1	NA	NA	NA	59	NM_007582	12299	Mm.57093	NM_007582	ENSMUSG00000020722	Cacng1	-	calcium channel, voltage-dependent, gamma subunit 1	protein-coding	0.035000	0.601990	
mm_139546.1	chr17	56764683	56764883	+	1	NA	NA	NA	32	NM_144858	224907	Mm.293973	NM_144858	ENSMUSG00000007603	Dus3l	AI662135|AW557805	dihydrouridine synthase 3-like (S. cerevisiae)	protein-coding	0.090000	0.661692	
mm_173088.1	chrX	150020181	150020381	+	1	NA	NA	NA	78626	NM_001122735	382244	Mm.359506	NM_001122735	ENSMUSG00000095082	Gm15091	OTTMUSG00000018981	predicted gene 15091	protein-coding	0.070000	0.646766	
mm_50455.1	chr6	48907567	48907767	+	1	NA	NA	NA	2681	NM_001161621	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.020000	0.582090	
mm_37186.1	chr4	117375360	117375560	-	1	NA	NA	NA	1	NM_001310729	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.000000	0.502488	-35(TTCTTTAAAAAC,-,0.00)
mm_51526.1	chr6	83186017	83186217	+	1	NA	NA	NA	171	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.045000	0.646766	
mm_12220.1	chr2	67648681	67648881	+	1	NA	NA	NA	-26676	NR_106083	102465706		NR_106083	ENSMUSG00000098299	Mir7224	Gm27971|mmu-mir-7224	microRNA 7224	ncRNA	0.010000	0.432836	
mm_111991.1	chr12	110682515	110682715	-	1	NA	NA	NA	4	NM_025488	66323	Mm.273316	NM_025488	ENSMUSG00000056508	1700001K19Rik	-	RIKEN cDNA 1700001K19 gene	protein-coding	0.000000	0.532338	
mm_71610.1	chr8	56551023	56551223	+	1	NA	NA	NA	-11	NM_015791	50753	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0.070000	0.532338	-40(CCTTTAAGGAGC,+,0.00)
mm_51610.1	chr6	84550993	84551193	+	1	NA	NA	NA	42717	NM_175475	232174	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.005000	0.582090	-33(TACTATAAAAGG,-,0.00)
mm_96256.1	chr11	62602970	62603170	+	1	NA	NA	NA	-16	NR_028526	100217426		NR_028526	ENSMUSG00000064437	Snord49b	MBII-252|MBII-366	small nucleolar RNA, C/D box 49B	snoRNA	0.090000	0.601990	
mm_79688.1	chr9	60334091	60334291	+	1	NA	NA	NA	176844	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.000000	0.487562	
mm_14316.1	chr2	129297269	129297469	+	1	NA	NA	NA	-1	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.045000	0.582090	
mm_116545.1	chr13	45963607	45963807	-	1	NA	NA	NA	1284	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.120000	0.746269	
mm_77991.1	chr9	8544112	8544312	+	1	NA	NA	NA	70	NM_001282087	22068	Mm.325086	NM_013838	ENSMUSG00000031997	Trpc6	AV025995|LLHWJM002|LLHWJM003|LLHWJM004|TRP-6|Trrp6|mtrp6	transient receptor potential cation channel, subfamily C, member 6	protein-coding	0.050000	0.646766	
mm_98035.1	chr11	85312076	85312276	+	1	NA	NA	NA	922	NM_016910	53892	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	0.050000	0.532338	
mm_28166.1	chr3	87846795	87846995	-	1	NA	NA	NA	140	NM_021309	27371	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	0.015000	0.487562	-70(GTCTCGAAAAGG,-,0.00)
mm_154309.1	chr19	61227241	61227441	-	1	NA	NA	NA	1077	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.050000	0.611940	
mm_154285.1	chr19	60864103	60864303	-	1	NA	NA	NA	-2773	NM_053198	94281	Mm.48179	NM_053198	ENSMUSG00000063698	Sfxn4	-	sideroflexin 4	protein-coding	0.000000	0.333333	
mm_92258.1	chr10	70644802	70645002	-	1	NA	NA	NA	7023	NR_045291	319646	Mm.483039	NR_045291	ENSMUSG00000037747	D630013N20Rik	-	RIKEN cDNA D630013N20 gene	ncRNA	0.000000	0.358209	
mm_84342.1	chr9	64186010	64186210	-	1	NA	NA	NA	6813	NM_183316	330959	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	0.005000	0.363184	
mm_41702.1	chr5	100916669	100916869	+	1	NA	NA	NA	70540	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|Gpat3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding	0.025000	0.422886	
mm_119453.1	chr14	47001240	47001440	+	1	NA	NA	NA	0	NM_001163433	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.015000	0.537313	
mm_154433.1	chrM	650	850	-	1	NA	NA	NA	NA	NA									0.010000	0.348259	64(CGGTATATAGGC,-,0.00)
mm_111322.1	chr12	86241583	86241783	-	1	NA	NA	NA	-175	NM_027405	70373	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	0.050000	0.567164	
mm_63350.1	chr7	126976315	126976515	+	1	NA	NA	NA	501	NM_001347656	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.060000	0.532338	-35(CGGCCTTAAAGG,-,0.00),-34(GGCCTTAAAGGG,-,0.00),-32(CCTTAAAGGGAC,+,0.00)
mm_85507.1	chr9	106243201	106243401	-	1	NA	NA	NA	4429	NM_001291835	11655	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	0.035000	0.626866	
mm_3529.1	chr1	150167358	150167558	+	1	NA	NA	NA	-2510	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.000000	0.417910	
mm_9403.1	chr1	172258349	172258549	-	1	NA	NA	NA	-25	NM_013734	27222	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	0.015000	0.587065	
mm_146341.1	chr18	82475145	82475345	+	1	NA	NA	NA	122	NM_001025245	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.115000	0.721393	
mm_96051.1	chr11	59565831	59566031	+	1	NA	NA	NA	5807	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.015000	0.537313	
mm_123240.1	chr14	60177968	60178168	-	1	NA	NA	NA	50847	NR_030458	751526		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA	0.020000	0.487562	
mm_52789.1	chr6	121261352	121261552	+	1	NA	NA	NA	15546	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.020000	0.537313	
mm_108236.1	chr12	77240933	77241133	+	1	NA	NA	NA	2294	NR_045554	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.000000	0.308458	74(CTTTTTAAACAT,+,0.00)
mm_36908.1	chr4	108031800	108032000	-	1	NA	NA	NA	190	NM_001285958	242608	Mm.74710	NM_172874	ENSMUSG00000028600	Podn	9430070G18|Pcan|SLRR5A	podocan	protein-coding	0.135000	0.726368	
mm_131100.1	chr16	4987357	4987557	+	1	NA	NA	NA	10395	NM_027669	71089	Mm.87382	NM_027669	ENSMUSG00000022542	Sept12	1700028G04Rik|4933413B09Rik|Septin12	septin 12	protein-coding	0.030000	0.597015	
mm_34447.1	chr4	148001001	148001201	+	1	NA	NA	NA	379	NM_008725	230899	Mm.482123	NM_008725	ENSMUSG00000041616	Nppa	ANP|Anf|Pnd	natriuretic peptide type A	protein-coding	0.025000	0.567164	-55(GCCTTTATAAAG,-,0.00),-53(CTTTATAAAGAA,+,0.00)
mm_32403.1	chr4	106911388	106911588	+	1	NA	NA	NA	18	NM_023672	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.195000	0.820896	
mm_121973.1	chr14	25687668	25687868	-	1	NA	NA	NA	-6402	NM_134084	105675	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.020000	0.597015	
mm_48561.1	chr5	143165626	143165826	-	1	NA	NA	NA	25	NR_040426	100042605	Mm.332809	NR_040424	ENSMUSG00000104529	Rbakdn	Gm3925	RB-associated KRAB zinc finger downstream neighbor (non-protein coding)	ncRNA	0.040000	0.597015	
mm_164701.1	chr17	50891330	50891530	+	1	NA	NA	NA	192749	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.000000	0.368159	16(GGCCTTTAAAGT,-,0.00),17(GCCTTTAAAGTT,+,0.00)
mm_116948.1	chr13	56135428	56135628	-	1	NA	NA	NA	22	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.155000	0.766169	
mm_147680.1	chr18	60660118	60660318	-	1	NA	NA	NA	-3192	NR_045401	328963	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.010000	0.547264	
mm_97150.1	chr11	75461564	75461764	+	1	NA	NA	NA	125	NR_030711	100042498	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0.085000	0.651741	
mm_115581.1	chr13	11669566	11669766	-	1	NA	NA	NA	147614	NR_027813	664793	Mm.410565	NR_027813		Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo	0.005000	0.373134	
mm_120883.1	chr14	75330330	75330530	+	1	NA	NA	NA	46057	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0.035000	0.427861	
mm_56238.1	chr6	90662956	90663156	-	1	NA	NA	NA	43810	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.020000	0.512438	
mm_19450.1	chr2	91991870	91992070	-	1	NA	NA	NA	-28407	NM_138306	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.040000	0.621891	
mm_113311.1	chr13	30757531	30757731	+	1	NA	NA	NA	8398	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.020000	0.552239	
mm_133823.1	chr16	95769898	95770098	+	1	NA	NA	NA	67591	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.030000	0.527363	
mm_150881.1	chr19	45076617	45076817	+	1	NA	NA	NA	578	NM_178929	107250	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.050000	0.597015	
mm_124772.1	chr15	7129465	7129665	+	1	NA	NA	NA	-7	NM_001113386	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.170000	0.805970	
mm_125950.1	chr15	76248752	76248952	+	1	NA	NA	NA	661	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.035000	0.577114	
mm_168700.1	chr11	97781737	97781937	-	1	NA	NA	NA	-71	NR_028078	100302498	Mm.453536	NR_028078	ENSMUSG00000064901	Snora21	MBI-3	small nucleolar RNA, H/ACA box 21	snoRNA	0.065000	0.592040	63(CCCTTTTAAAAG,-,0.00),64(CCTTTTAAAAGC,+,0.00),64(CCTTTTAAAAGC,-,0.00),65(CTTTTAAAAGCA,+,0.00)
mm_47177.1	chr5	120749566	120749766	-	1	NA	NA	NA	182	NM_145227	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.025000	0.537313	
mm_142672.1	chr17	47730048	47730248	-	1	NA	NA	NA	3306	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.025000	0.587065	
mm_52179.1	chr6	99305890	99306090	+	1	NA	NA	NA	-39475	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.010000	0.512438	
mm_14013.1	chr2	122149074	122149274	+	1	NA	NA	NA	1487	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.005000	0.437811	
mm_98475.1	chr11	94950374	94950574	+	1	NA	NA	NA	14250	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.065000	0.592040	
mm_45838.1	chr5	87695169	87695369	-	1	NA	NA	NA	4156	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.000000	0.353234	
mm_26091.1	chr3	136754956	136755156	+	1	NA	NA	NA	84990	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.010000	0.368159	
mm_11624.1	chr2	34774564	34774764	+	1	NA	NA	NA	2574	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.020000	0.477612	
mm_142703.1	chr17	47878618	47878818	-	1	NA	NA	NA	-44027	NM_001109973	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.020000	0.671642	
mm_30162.1	chr3	144188723	144188923	-	1	NA	NA	NA	13509	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.005000	0.328358	
mm_49329.1	chr6	21215273	21215473	+	1	NA	NA	NA	-736	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.085000	0.646766	
mm_123982.1	chr14	75591880	75592080	-	1	NA	NA	NA	5	NM_026457	67926	Mm.23361	NM_026457	ENSMUSG00000034913	Spert	1700086N05Rik|AI596460|Nurit	spermatid associated	protein-coding	0.000000	0.517413	
mm_26820.1	chr3	10335325	10335525	-	1	NA	NA	NA	231	NM_001010834	241877	Mm.442146	NM_001010834	ENSMUSG00000058921	Slc10a5	Gm405|mP5	solute carrier family 10 (sodium/bile acid cotransporter family), member 5	protein-coding	0.020000	0.452736	
mm_162156.1	chrX	86256128	86256328	-	1	NA	NA	NA	-9	NM_001033492	434903	Mm.213584	NM_001033492	ENSMUSG00000035427	Mageb4	CN716893|Mage-b4|mMage-b4	melanoma antigen, family B, 4	protein-coding	0.055000	0.601990	
mm_60397.1	chr7	44475418	44475618	+	1	NA	NA	NA	5171	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.010000	0.572139	
mm_113449.1	chr13	35741280	35741480	+	1	NA	NA	NA	-22	NM_001123386	12593	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.120000	0.766169	
mm_71618.1	chr8	57323219	57323419	+	1	NA	NA	NA	2336	NM_010402	15111	Mm.430844	NM_010402	ENSMUSG00000038193	Hand2	AI225906|AI661148|Ehand2|Hed|Th2|Thing2|bHLHa26|dHAND	heart and neural crest derivatives expressed transcript 2	protein-coding	0.020000	0.497512	
mm_141930.1	chr17	35027822	35028022	-	1	NA	NA	NA	94	NR_028258	78376	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	0.020000	0.601990	
mm_120934.1	chr14	76504455	76504655	+	1	NA	NA	NA	45	NM_009366	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.090000	0.666667	-77(GCCTATATGTGG,-,0.00)
mm_125832.1	chr15	74957678	74957878	+	1	NA	NA	NA	2672	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.010000	0.562189	
mm_306.1	chr1	23761911	23762111	+	1	NA	NA	NA	85	NM_172124	280645	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0.085000	0.631841	
mm_26567.1	chr3	146597045	146597245	+	1	NA	NA	NA	-4	NM_009474	22262	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.030000	0.457711	
mm_130419.1	chr15	98085484	98085684	-	1	NA	NA	NA	-7005	NM_001163488	18642	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	0.000000	0.358209	
mm_62859.1	chr7	114698400	114698600	+	1	NA	NA	NA	-20143	NM_054084	116903	Mm.273838	NM_054084	ENSMUSG00000030666	Calcb	CGRP2|Calc2	calcitonin-related polypeptide, beta	protein-coding	0.000000	0.522388	
mm_98370.1	chr11	94044016	94044216	+	1	NA	NA	NA	-89	NM_001025430	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.030000	0.482587	
mm_135007.1	chr16	32247026	32247226	-	1	NA	NA	NA	-101	NM_173439	268882	Mm.256137	NM_173439	ENSMUSG00000035764	Fbxo45	2610017J04Rik|AI463119|BC026799	F-box protein 45	protein-coding	0.140000	0.726368	
mm_79518.1	chr9	57537509	57537709	+	1	NA	NA	NA	81	NM_001166364	78323	Mm.25814	NM_175273	ENSMUSG00000032305	Fam219b	2310046O06Rik|AI594866	family with sequence similarity 219, member B	protein-coding	0.125000	0.686567	
mm_3586.1	chr1	151344458	151344658	+	1	NA	NA	NA	60	NM_001039511	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.180000	0.756219	
mm_22254.1	chr2	174853257	174853457	-	1	NA	NA	NA	92738	NM_007903	13616	Mm.9478	NM_007903	ENSMUSG00000027524	Edn3	ET-3|PPET3|ls|tmgc48	endothelin 3	protein-coding	0.020000	0.457711	
mm_33484.1	chr4	130818876	130819076	+	1	NA	NA	NA	26439	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.035000	0.651741	
mm_173075.1	chrX	136215398	136215598	-	1	NA	NA	NA	15	NM_009052	19716	Mm.422943	NM_009052	ENSMUSG00000050071	Bex1	AA407839|AU018692|Bex4|Rex3	brain expressed X-linked 1	protein-coding	0.060000	0.661692	
mm_150898.1	chr19	45528100	45528300	+	1	NA	NA	NA	32364	NM_001330506	56626	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0.015000	0.507463	
mm_17162.1	chr2	25246753	25246953	-	1	NA	NA	NA	3924	NM_176834	68846	Mm.24777	NM_176834	ENSMUSG00000044628	Rnf208	1110061N23Rik	ring finger protein 208	protein-coding	0.015000	0.567164	
mm_149979.1	chr19	29101347	29101547	+	1	NA	NA	NA	72	NM_021525	59028	Mm.28630	NM_021525	ENSMUSG00000024785	Rcl1	2310040A02Rik|AI789745|C76567|RPCL1|Rnac	RNA terminal phosphate cyclase-like 1	protein-coding	0.125000	0.721393	
mm_95544.1	chr11	52306670	52306870	+	1	NA	NA	NA	-23756	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.005000	0.507463	
mm_155222.1	chrX	57053794	57053994	+	1	NA	NA	NA	60	NM_029371	72459	Mm.2152	NM_028242	ENSMUSG00000067873	Htatsf1	1600023H17Rik|2600017A12Rik|2700077B20Rik|TAT-SF1	HIV TAT specific factor 1	protein-coding	0.085000	0.691542	
mm_50758.1	chr6	53503754	53503954	+	1	NA	NA	NA	-69520	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.005000	0.363184	
mm_159603.1	chr4	128884048	128884248	+	1	NA	NA	NA	8	NM_178110	67525	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0.130000	0.781095	
mm_104025.1	chr11	86087800	86088000	-	1	NA	NA	NA	-63550	NR_046030	629393	Mm.372867	NR_046030		Gm20759	-	predicted gene, 20759	ncRNA	0.000000	0.283582	
mm_103084.1	chr11	69916889	69917089	-	1	NA	NA	NA	2797	NM_019726	56310	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953	G protein pathway suppressor 2	protein-coding	0.005000	0.487562	
mm_105395.1	chr11	103395162	103395362	-	1	NA	NA	NA	17402	NM_183034	353047	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.030000	0.532338	
mm_146097.1	chr18	73869884	73870084	+	1	NA	NA	NA	10599	NM_001305882	71263	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	0.035000	0.502488	
mm_128380.1	chr15	42676845	42677045	-	1	NA	NA	NA	32	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.035000	0.522388	
mm_97349.1	chr11	77469908	77470108	+	1	NA	NA	NA	6095	NM_139130	216961	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.010000	0.467662	
mm_63145.1	chr7	123214731	123214931	+	1	NA	NA	NA	-35	NM_146198	233836	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.005000	0.557214	
mm_8310.1	chr1	144177170	144177370	-	1	NA	NA	NA	102	NM_153171	246709	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	0.020000	0.402985	
mm_138755.1	chr17	37050035	37050235	+	1	NA	NA	NA	4169	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.075000	0.626866	
mm_144078.1	chr17	91092769	91092969	-	1	NA	NA	NA	-67	NM_020252	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.050000	0.646766	
mm_74277.1	chr8	125292019	125292219	+	1	NA	NA	NA	200591	NM_001081337	244668	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.040000	0.532338	56(GCTTTAATGGAA,+,0.00)
mm_64351.1	chr7	142385374	142385574	+	1	NA	NA	NA	2396	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.015000	0.532338	
mm_157496.1	chrX	48454187	48454387	-	1	NA	NA	NA	8845	NM_019680	56501	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|ENSMUSG00000053512|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	0.090000	0.691542	
mm_70596.1	chr8	13288150	13288350	+	1	NA	NA	NA	-124	NM_001042650	102323	Mm.368890	NM_001024504	ENSMUSG00000038506	Dcun1d2	AW495713|mFLJ10704	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	protein-coding	0.085000	0.616915	
mm_101869.1	chr11	48891698	48891898	-	1	NA	NA	NA	10354	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.000000	0.358209	
mm_75960.1	chr8	71719133	71719333	-	1	NA	NA	NA	6448	NR_131256	74015	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.010000	0.527363	
mm_79182.1	chr9	48389954	48390154	+	1	NA	NA	NA	28013	NM_172921	244853	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	0.005000	0.502488	
mm_66511.1	chr7	45102975	45103175	-	1	NA	NA	NA	747	NM_010189	14132	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0.030000	0.616915	
mm_91146.1	chr10	20170752	20170952	-	1	NA	NA	NA	21932	NM_001198635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.050000	0.537313	-35(CTCTATTAAAGG,-,0.00)
mm_60603.1	chr7	44572221	44572421	+	1	NA	NA	NA	-124	NM_008437	16541	Mm.383181	NM_008437	ENSMUSG00000002204	Napsa	KAP|Kdap|NAP1|SNAPA|pronapsin	napsin A aspartic peptidase	protein-coding	0.010000	0.492537	
mm_56014.1	chr6	86525410	86525610	-	1	NA	NA	NA	655	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.085000	0.661692	
mm_94524.1	chr11	9048734	9048934	+	1	NA	NA	NA	157	NM_001290520	194974	Mm.79210	NM_177576	ENSMUSG00000040985	Sun3	Sunc1	Sad1 and UNC84 domain containing 3	protein-coding	0.060000	0.567164	
mm_22263.1	chr2	178407360	178407560	-	1	NA	NA	NA	198	NM_177191	320558	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding	0.095000	0.686567	
mm_167866.1	chrX	21475216	21475416	+	1	NA	NA	NA	-9308	NM_007429	11609	Mm.2679	NM_007429	ENSMUSG00000068122	Agtr2	AI316812|AW107640	angiotensin II receptor, type 2	protein-coding	0.000000	0.373134	
mm_70068.1	chr7	142652900	142653100	-	1	NA	NA	NA	1996	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.000000	0.427861	-41(TACCCTAAAAAG,-,0.00),-39(CCCTAAAAAGCA,+,0.00)
mm_144302.1	chr18	12410766	12410966	+	1	NA	NA	NA	76842	NM_010680	16774	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0.000000	0.452736	
mm_88132.1	chr10	69398679	69398879	+	1	NA	NA	NA	-45867	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.090000	0.731343	
mm_42067.1	chr5	109866624	109866824	+	1	NA	NA	NA	-32582	NR_027964	667213	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213|ENSMUSG00000072761	zinc finger protein pseudogene	pseudo	0.050000	0.572139	
mm_124581.1	chr14	124669795	124669995	-	1	NA	NA	NA	7232	NM_207667	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.025000	0.557214	
mm_47869.1	chr5	134639404	134639604	-	1	NA	NA	NA	-95	NM_033561	22384	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0.150000	0.756219	
mm_38833.1	chr4	149150533	149150733	-	1	NA	NA	NA	-13033	NM_027263	69928	Mm.260893	NM_027263	ENSMUSG00000073705	Apitd1	2610040C18Rik|2810407L01Rik|CENP-S	apoptosis-inducing, TAF9-like domain 1	protein-coding	0.025000	0.557214	
mm_109551.1	chr12	111712916	111713116	+	1	NA	NA	NA	-63	NM_001324482	70369	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.185000	0.796020	
mm_160213.1	chr7	98360039	98360239	-	1	NA	NA	NA	1149	NM_001168540	244152	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.065000	0.587065	
mm_87720.1	chr10	60106146	60106346	+	1	NA	NA	NA	-11	NM_052994	94214	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.040000	0.482587	
mm_169911.1	chr16	54868203	54868403	-	1	NA	NA	NA	414934	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0.030000	0.507463	-53(GCTTTAATAGCT,+,0.00)
mm_41775.1	chr5	103692347	103692547	+	1	NA	NA	NA	-36715	NM_001163550	74218	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.090000	0.696517	
mm_105205.1	chr11	102097877	102098077	-	1	NA	NA	NA	3323	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.020000	0.427861	
mm_31654.1	chr4	59806728	59806928	+	1	NA	NA	NA	1178	NM_172468	209131	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.030000	0.512438	8(CCTCTTATAGCG,+,0.00)
mm_114579.1	chr13	75704663	75704863	+	1	NA	NA	NA	-2721	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.005000	0.328358	
mm_153453.1	chr19	41031964	41032164	-	1	NA	NA	NA	2789	NM_009345	21673	Mm.25620	NM_009345	ENSMUSG00000025014	Dntt	Tdt	deoxynucleotidyltransferase, terminal	protein-coding	0.025000	0.532338	
mm_90388.1	chr10	127321775	127321975	+	1	NA	NA	NA	-89	NM_001285785	216445	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.005000	0.527363	
mm_149493.1	chr19	11821388	11821588	+	1	NA	NA	NA	-2085	NM_001025307	20908	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.010000	0.383085	
mm_3925.1	chr1	162581723	162581923	+	1	NA	NA	NA	10995	NM_001347125	53330	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e	vesicle-associated membrane protein 4	protein-coding	0.005000	0.338308	
mm_5613.1	chr1	39651081	39651281	-	1	NA	NA	NA	1	NM_170597	263764	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0.075000	0.631841	
mm_97386.1	chr11	77765516	77765716	+	1	NA	NA	NA	-11619	NM_001291213	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.015000	0.552239	
mm_149930.1	chr19	26753496	26753696	+	1	NA	NA	NA	5193	NM_026003	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.010000	0.462687	
mm_159326.1	chr3	30644398	30644598	+	1	NA	NA	NA	-9	NM_026668	68307	Mm.389425	NM_026668	ENSMUSG00000027703	Lrriq4	4930558O21Rik	leucine-rich repeats and IQ motif containing 4	protein-coding	0.005000	0.487562	
mm_147146.1	chr18	36560066	36560266	-	1	NA	NA	NA	-437	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.040000	0.512438	
mm_27079.1	chr3	30012799	30012999	-	1	NA	NA	NA	305	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.025000	0.462687	
mm_70132.1	chr7	143241332	143241532	-	1	NA	NA	NA	55115	NR_001461	63830	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.005000	0.383085	
mm_16277.1	chr2	173737517	173737717	+	1	NA	NA	NA	46	NM_019806	56491	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.165000	0.766169	
mm_3320.1	chr1	137912756	137912956	+	1	NA	NA	NA	-53599	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.015000	0.313433	
mm_120875.1	chr14	75274915	75275115	+	1	NA	NA	NA	-9358	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0.010000	0.417910	
mm_97028.1	chr11	72208176	72208376	+	1	NA	NA	NA	722	NM_026559	52700	Mm.27670	NM_026559	ENSMUSG00000020803	Txndc17	4831443O22Rik|D11Ertd672e|TRP14|Txnl5	thioredoxin domain containing 17	protein-coding	0.030000	0.432836	
mm_134882.1	chr16	28951307	28951507	-	1	NA	NA	NA	-21709	NM_177718	239796	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.045000	0.492537	
mm_158843.1	chrX	169320228	169320428	-	1	NA	NA	NA	44	NM_001331050	15159	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	0.170000	0.701493	
mm_45752.1	chr5	86783013	86783213	-	1	NA	NA	NA	-21153	NM_001347375	231386	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.015000	0.532338	
mm_76432.1	chr8	84980917	84981117	-	1	NA	NA	NA	-2269	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.000000	0.492537	
mm_51586.1	chr6	83795093	83795293	+	1	NA	NA	NA	35	NM_001164187	56174	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	0.110000	0.656716	
mm_20983.1	chr2	151980014	151980214	-	1	NA	NA	NA	105	NM_146127	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.085000	0.671642	
mm_3627.1	chr1	152767892	152768092	+	1	NA	NA	NA	1450	NM_026369	67771	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	0.000000	0.253731	
mm_88937.1	chr10	81292921	81293121	+	1	NA	NA	NA	58	NM_001146687	18717	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.165000	0.771144	
mm_135336.1	chr16	42290875	42291075	-	1	NA	NA	NA	12494	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0.000000	0.328358	
mm_172430.1	chr7	28961053	28961253	-	1	NA	NA	NA	1127	NM_021895	60595	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.005000	0.452736	
mm_93185.1	chr10	93889514	93889714	-	1	NA	NA	NA	1588	NM_019648	56307	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	0.070000	0.606965	
mm_128580.1	chr15	58034116	58034316	-	1	NA	NA	NA	78	NM_029418	75758	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.120000	0.676617	
mm_118853.1	chr14	25707282	25707482	+	1	NA	NA	NA	-6100	NR_028021	68173	Mm.444727	NM_026595		Ppifos	4930520F12Rik|Ppifs	peptidylprolyl isomerase F, opposite strand	ncRNA	0.015000	0.492537	
mm_134053.1	chr16	5445772	5445972	-	1	NA	NA	NA	-189916	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.015000	0.507463	
mm_76531.1	chr8	87804337	87804537	-	1	NA	NA	NA	2	NM_001310520	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	0.025000	0.651741	
mm_141971.1	chr17	35135367	35135567	-	1	NA	NA	NA	-247	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.075000	0.616915	
mm_9678.1	chr1	178332031	178332231	-	1	NA	NA	NA	5653	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.010000	0.398010	
mm_50938.1	chr6	57703312	57703512	+	1	NA	NA	NA	957	NM_133737	71835	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.070000	0.587065	
mm_156414.1	chrX	140664741	140664941	+	1	NA	NA	NA	-13187	NM_011845	23947	Mm.131097	NM_011845	ENSMUSG00000000266	Mid2	FXY2|Trim1	midline 2	protein-coding	0.060000	0.666667	
mm_60227.1	chr7	43579982	43580182	+	1	NA	NA	NA	496	NM_172482	210105	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	0.050000	0.597015	
mm_24440.1	chr3	90600142	90600342	+	1	NA	NA	NA	27	NM_011310	20197	Mm.440044	NM_011310	ENSMUSG00000001021	S100a3	S100E	S100 calcium binding protein A3	protein-coding	0.015000	0.552239	
mm_152863.1	chr19	24224835	24225035	-	1	NA	NA	NA	91	NM_011597	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.120000	0.711443	
mm_101117.1	chr11	12004220	12004420	-	1	NA	NA	NA	23651	NM_001177629	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.005000	0.358209	
mm_31477.1	chr4	51229680	51229880	+	1	NA	NA	NA	13102	NM_001162865	74914	Mm.159368	NM_001162865	ENSMUSG00000039555	Cylc2	4930488P18Rik	cylicin, basic protein of sperm head cytoskeleton 2	protein-coding	0.000000	0.348259	
mm_46423.1	chr5	104113683	104113883	-	1	NA	NA	NA	305	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding	0.010000	0.502488	
mm_106588.1	chr11	120729641	120729841	-	1	NA	NA	NA	2280	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.040000	0.577114	
mm_27917.1	chr3	79531699	79531899	-	1	NA	NA	NA	35880	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.015000	0.507463	
mm_101609.1	chr11	35798474	35798674	-	1	NA	NA	NA	310	NM_001004147	237730	Mm.189222	NM_001004147	ENSMUSG00000051062	Fbll1	AI595406	fibrillarin-like 1	protein-coding	0.105000	0.671642	
mm_61923.1	chr7	90160403	90160603	+	1	NA	NA	NA	30271	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.010000	0.338308	
mm_54140.1	chr6	21858074	21858274	-	1	NA	NA	NA	-5659	NM_173007	269831	Mm.21950	NM_173007	ENSMUSG00000029669	Tspan12	9030619E17|AI426782|AI663988|AW111457|Tm4sf12	tetraspanin 12	protein-coding	0.015000	0.562189	
mm_58357.1	chr6	148211928	148212128	-	1	NA	NA	NA	-260	NR_015615	320737	Mm.137858	NR_015615		4732416N19Rik	-	RIKEN cDNA 4732416N19 gene	ncRNA	0.120000	0.611940	
mm_30965.1	chr4	33926280	33926480	+	1	NA	NA	NA	1748	NM_007726	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding	0.010000	0.388060	
mm_144715.1	chr18	35118792	35118992	+	1	NA	NA	NA	-20	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.155000	0.781095	
mm_142067.1	chr17	35688910	35689110	-	1	NA	NA	NA	11580	NM_001198833	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.025000	0.537313	
mm_167534.1	chr9	21291322	21291522	-	1	NA	NA	NA	-213	NM_009878	12581	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	protein-coding	0.065000	0.606965	
mm_146131.1	chr18	74625443	74625643	+	1	NA	NA	NA	-94419	NR_045368	73606	Mm.444734	NR_045368		1700120E14Rik	-	RIKEN cDNA 1700120E14 gene	ncRNA	0.030000	0.537313	
mm_138754.1	chr17	37049876	37050076	+	1	NA	NA	NA	4010	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.080000	0.626866	
mm_12655.1	chr2	75138880	75139080	+	1	NA	NA	NA	305199	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA	0.035000	0.537313	-28(TGCCATTTAAGC,-,0.00),-26(CCATTTAAGCAG,+,0.00)
mm_183.1	chr1	15066923	15067123	+	1	NA	NA	NA	-148161	NM_177781	277328	Mm.186329	NM_177781	ENSMUSG00000032769	Trpa1	Anktm1|TRPA1b	transient receptor potential cation channel, subfamily A, member 1	protein-coding	0.010000	0.363184	67(TGCTCTAAAAAC,-,0.00)
mm_19245.1	chr2	84743597	84743797	-	1	NA	NA	NA	-2519	NR_029544	387149		NR_029544	ENSMUSG00000065484	Mir130a	Mirn130|Mirn130a|mir-130a	microRNA 130a	ncRNA	0.070000	0.656716	
mm_54574.1	chr6	38096936	38097136	-	1	NA	NA	NA	-12317	NM_029921	77522	Mm.387207	NM_029921	ENSMUSG00000029829	Tmem213	D630002J15Rik	transmembrane protein 213	protein-coding	0.010000	0.646766	
mm_12668.1	chr2	75704766	75704966	+	1	NA	NA	NA	-203	NM_010902	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.085000	0.706468	
mm_7748.1	chr1	131094879	131095079	-	1	NA	NA	NA	2864	NM_008551	17164	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.000000	0.437811	
mm_19422.1	chr2	91931581	91931781	-	1	NA	NA	NA	21	NM_001291481	17242	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.065000	0.666667	
mm_135484.1	chr16	46010173	46010373	-	1	NA	NA	NA	140	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.050000	0.651741	
mm_71899.1	chr8	70042703	70042903	+	1	NA	NA	NA	-10	NM_027481	70616	Mm.17665	NM_027481	ENSMUSG00000011306	Sugp1	5730496N02Rik|Sf4	SURP and G patch domain containing 1	protein-coding	0.070000	0.567164	
mm_37849.1	chr4	132206341	132206541	-	1	NA	NA	NA	5815	NM_145393	213541	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0.005000	0.363184	
mm_123268.1	chr14	61360280	61360480	-	1	NA	NA	NA	65	NM_026598	68177	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0.095000	0.746269	
mm_38467.1	chr4	140648623	140648823	-	1	NA	NA	NA	33	NM_001112723	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.160000	0.825871	
mm_107883.1	chr12	70154041	70154241	+	1	NA	NA	NA	-30	NM_001195033	100504285	Mm.291105	NM_001195033	ENSMUSG00000090121	Abhd12b	Gm804	abhydrolase domain containing 12B	protein-coding	0.015000	0.631841	
mm_150254.1	chr19	34192180	34192380	+	1	NA	NA	NA	10	NM_029682	76630	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.060000	0.641791	
mm_73922.1	chr8	119809959	119810159	+	1	NA	NA	NA	30520	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.010000	0.562189	
mm_130347.1	chr15	97748466	97748666	-	1	NA	NA	NA	-17161	NM_001168693	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.015000	0.562189	
mm_72322.1	chr8	78509259	78509459	+	1	NA	NA	NA	31	NM_001282108	76775	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0.085000	0.626866	
mm_103543.1	chr11	77519102	77519302	-	1	NA	NA	NA	4085	NM_026185	67477	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	0.010000	0.502488	
mm_167990.1	chrX	170009596	170009796	+	1	NA	NA	NA	-30779	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.165000	0.815920	
mm_164433.1	chr16	48872340	48872540	-	1	NA	NA	NA	-168	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.005000	0.442786	
mm_139483.1	chr17	56040335	56040535	+	1	NA	NA	NA	19	NM_013733	27221	Mm.391010	NM_013733	ENSMUSG00000002835	Chaf1a	AL023013|AL024058|CAF-1|Cac1p	chromatin assembly factor 1, subunit A (p150)	protein-coding	0.190000	0.786070	
mm_156971.1	chrX	169997420	169997620	+	1	NA	NA	NA	-18603	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.100000	0.676617	
mm_96903.1	chr11	70455691	70455891	+	1	NA	NA	NA	-3831	NM_001029929	574428	Mm.472771	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.005000	0.567164	
mm_170586.1	chr19	5798990	5799190	-	1	NA	NA	NA	-3109	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.000000	0.308458	-40(ACCTTTAAAAGT,-,0.00),-39(CCTTTAAAAGTT,+,0.00)
mm_155927.1	chrX	103447624	103447824	+	1	NA	NA	NA	16207	NR_002844	22097	Mm.472939	NR_002844	ENSMUSG00000085715	Tsix	-	X (inactive)-specific transcript, opposite strand	ncRNA	0.065000	0.611940	
mm_84875.1	chr9	79718516	79718716	-	1	NA	NA	NA	106	NM_001290308	12816	Mm.3819	NM_007730	ENSMUSG00000032332	Col12a1	-	collagen, type XII, alpha 1	protein-coding	0.105000	0.651741	
mm_107321.1	chr12	31390747	31390947	+	1	NA	NA	NA	-39376	NM_007861	13382	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	0.005000	0.502488	
mm_115459.1	chr13	119428331	119428531	+	1	NA	NA	NA	-169	NM_001079849	218693	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0.140000	0.746269	
mm_141772.1	chr17	34283676	34283876	-	1	NA	NA	NA	3995	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.025000	0.512438	
mm_161544.1	chr16	3838822	3839022	+	1	NA	NA	NA	-53	NM_008762	18312	Mm.377102	NM_008762	ENSMUSG00000059043	Olfr15	MOR256-17|OR3	olfactory receptor 15	protein-coding	0.015000	0.562189	
mm_80123.1	chr9	70576682	70576882	+	1	NA	NA	NA	33912	NM_025690	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.000000	0.422886	
mm_2077.1	chr1	87653220	87653420	+	1	NA	NA	NA	33008	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.005000	0.398010	
mm_170865.1	chr2	18453554	18453754	+	1	NA	NA	NA	-60824	NM_007869	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.005000	0.522388	84(TCCTTTATAAGC,-,0.00),86(CTTTATAAGCGC,+,0.00)
mm_146587.1	chr18	9282629	9282829	-	1	NA	NA	NA	80	NM_153086	225152	Mm.119273	NM_153086	ENSMUSG00000036855	Gjd4	9430022F06Rik|Cx39	gap junction protein, delta 4	protein-coding	0.015000	0.502488	
mm_100197.1	chr11	116752836	116753036	+	1	NA	NA	NA	769	NR_003364	193217	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	0.005000	0.477612	
mm_10559.1	chr2	17558960	17559160	+	1	NA	NA	NA	-4454	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	0.005000	0.502488	
mm_73481.1	chr8	107030933	107031133	+	1	NA	NA	NA	-293	NM_126165	116733	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0.070000	0.676617	
mm_86878.1	chr10	21997028	21997228	+	1	NA	NA	NA	2462	NM_011361	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.025000	0.497512	
mm_120625.1	chr14	70457493	70457693	+	1	NA	NA	NA	76	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.070000	0.621891	
mm_171055.1	chr3	104753195	104753395	-	1	NA	NA	NA	24252	NM_183224	329731	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	0.060000	0.512438	
mm_219.1	chr1	16814153	16814353	+	1	NA	NA	NA	125797	NM_016923	17087	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0.000000	0.497512	
mm_110011.1	chr12	16589629	16589829	-	1	NA	NA	NA	41	NM_015763	14245	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188	lipin 1	protein-coding	0.085000	0.666667	
mm_109867.1	chr12	4907505	4907705	-	1	NA	NA	NA	-85	NM_145441	217379	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding	0.200000	0.810945	
mm_14376.1	chr2	129630481	129630681	+	1	NA	NA	NA	37412	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.010000	0.542289	
mm_105065.1	chr11	100720050	100720250	-	1	NA	NA	NA	6300	NM_029307	75482	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.035000	0.582090	
mm_90104.1	chr10	116986573	116986773	+	1	NA	NA	NA	359	NM_001007583	382427	Mm.339322	NM_001007583	ENSMUSG00000020169	Best3	Vmd2l3|mBest4	bestrophin 3	protein-coding	0.025000	0.547264	
mm_47091.1	chr5	117399288	117399488	-	1	NA	NA	NA	-10365	NM_028128	72151	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	0.020000	0.587065	-36(CACTATAAAAGG,-,0.00)
mm_42547.1	chr5	116058743	116058943	+	1	NA	NA	NA	24403	NM_001101546	545798	Mm.483995	NM_001101546	ENSMUSG00000079278	Tmem233	DSPB2|Gm13843|OTTMUSG00000014722	transmembrane protein 233	protein-coding	0.020000	0.412935	
mm_62533.1	chr7	102247651	102247851	+	1	NA	NA	NA	2367	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.010000	0.477612	
mm_143269.1	chr17	65642097	65642297	-	1	NA	NA	NA	7	NM_001146002	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.015000	0.487562	
mm_72648.1	chr8	84722913	84723113	+	1	NA	NA	NA	21556	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.020000	0.646766	
mm_93712.1	chr10	118869040	118869240	-	1	NA	NA	NA	-237	NM_001014390	69181	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.165000	0.815920	
mm_157155.1	chrX	9463372	9463572	-	1	NA	NA	NA	5852	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.407960	
mm_118701.1	chr14	22158989	22159189	+	1	NA	NA	NA	139377	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.010000	0.417910	
mm_132249.1	chr16	32751285	32751485	+	1	NA	NA	NA	15499	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.010000	0.432836	
mm_77509.1	chr8	122892743	122892943	-	1	NA	NA	NA	44469	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.030000	0.512438	
mm_38111.1	chr4	134534977	134535177	-	1	NA	NA	NA	191	NM_001256112	76824	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	0.140000	0.741294	
mm_54222.1	chr6	26766791	26766991	-	1	NA	NA	NA	835465	NR_040771	626904	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.015000	0.412935	
mm_45830.1	chr5	87694570	87694770	-	1	NA	NA	NA	4755	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.512438	
mm_159239.1	chr2	147085023	147085223	-	1	NA	NA	NA	222	NM_023504	228731	Mm.315498	NM_023504	ENSMUSG00000054160	Nkx2-4	1700001P03Rik|Nkx-2.4|tinman	NK2 homeobox 4	protein-coding	0.165000	0.805970	
mm_170914.1	chr2	3550644	3550844	+	1	NA	NA	NA	27443	NR_030564	100124442		NR_030564	ENSMUSG00000076966	Mir466b-2	Mirn466b-2	microRNA 466b-2	ncRNA	0.035000	0.402985	-99(CCCTAGAAAAAG,-,0.00)
mm_14154.1	chr2	126576705	126576905	+	1	NA	NA	NA	23781	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0.010000	0.393035	
mm_171184.1	chr3	37481615	37481815	+	1	NA	NA	NA	61765	NM_021343	57815	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0.045000	0.482587	31(AACTTTAAATGG,-,0.00)
mm_95215.1	chr11	43681978	43682178	+	1	NA	NA	NA	80	NM_001164231	70802	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	0.135000	0.751244	
mm_163108.1	chr11	69966775	69966975	+	1	NA	NA	NA	1454	NM_016887	53624	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	0.055000	0.661692	88(GCCTTAATGGTG,+,0.00)
mm_134864.1	chr16	28500060	28500260	-	1	NA	NA	NA	-54085	NM_001276420	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.005000	0.348259	
mm_33009.1	chr4	120667066	120667266	+	1	NA	NA	NA	603	NM_019563	56222	Mm.272646	NM_019563	ENSMUSG00000070803	Cited4	MRG-2|Mrg2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding	0.150000	0.756219	
mm_5360.1	chr1	25829549	25829749	-	1	NA	NA	NA	58	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.040000	0.462687	
mm_52960.1	chr6	123123354	123123554	+	1	NA	NA	NA	138	NM_001170333	26888	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0.010000	0.388060	
mm_170306.1	chr18	34951291	34951491	-	1	NA	NA	NA	2960	NM_010481	15526	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.010000	0.437811	
mm_112786.1	chr13	20184865	20185065	+	1	NA	NA	NA	94458	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.025000	0.492537	
mm_79475.1	chr9	56937726	56937926	+	1	NA	NA	NA	326	NM_133976	102462	Mm.12864	NM_133976	ENSMUSG00000032288	Imp3	1190002L16Rik|AI256594	IMP3, U3 small nucleolar ribonucleoprotein	protein-coding	0.100000	0.656716	
mm_38629.1	chr4	142170918	142171118	-	1	NA	NA	NA	39190	NM_144531	71529	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	0.025000	0.482587	
mm_78960.1	chr9	45189889	45190089	+	1	NA	NA	NA	-5777	NM_001198971	408059	Mm.249297	NM_001198971	ENSMUSG00000091996	BC049352	-	cDNA sequence BC049352	protein-coding	0.005000	0.402985	
mm_9005.1	chr1	165848945	165849145	-	1	NA	NA	NA	60364	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.015000	0.542289	
mm_95840.1	chr11	57011846	57012046	+	1	NA	NA	NA	328	NM_008165	14799	Mm.4920	NM_008165	ENSMUSG00000020524	Gria1	2900051M01Rik|Glr-1|Glr1|GluA1|GluR-A|GluRA|Glur-1|Glur1|HIPA1|gluR-K1	glutamate receptor, ionotropic, AMPA1 (alpha 1)	protein-coding	0.020000	0.482587	
mm_155006.1	chrX	41400719	41400919	+	1	NA	NA	NA	-482	NM_016886	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding	0.035000	0.507463	
mm_117894.1	chr13	99423482	99423682	-	1	NA	NA	NA	-10756	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.308458	
mm_172884.1	chr9	50984033	50984233	-	1	NA	NA	NA	24940	NM_178710	235344	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0.000000	0.517413	
mm_60319.1	chr7	44216257	44216457	+	1	NA	NA	NA	-117	NM_008456	16622	Mm.443373	NM_008456	ENSMUSG00000066512	Klk1b5	Klk5|kallikrein|mGK-5	kallikrein 1-related peptidase b5	protein-coding	0.005000	0.562189	70(GGGTTTTTAAAG,-,0.00),72(GTTTTTAAAGTC,+,0.00)
mm_118168.1	chr13	105299190	105299390	-	1	NA	NA	NA	-6276	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.000000	0.313433	
mm_71301.1	chr8	41265576	41265776	+	1	NA	NA	NA	25917	NM_023662	18536	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	0.005000	0.407960	
mm_172484.1	chr7	5159195	5159395	+	1	NA	NA	NA	-11873	NM_001166706	384522	Mm.480286	NM_001166706	ENSMUSG00000074402	Vmn1r55	Gm1422|Gm403|V1rd5	vomeronasal 1 receptor 55	protein-coding	0.035000	0.552239	
mm_112560.1	chr13	13275470	13275670	+	1	NA	NA	NA	92854	NM_001311129	107849	Mm.392548	NM_181852	ENSMUSG00000055360	Prl2c5	Ghd3|MRP-4|Mrpplf4|PLF-4	prolactin family 2, subfamily c, member 5	protein-coding	0.010000	0.388060	
mm_41311.1	chr5	90468574	90468774	+	1	NA	NA	NA	7804	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.005000	0.497512	
mm_58562.1	chr7	4742430	4742630	+	1	NA	NA	NA	2403	NM_001115018	232811	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	0.015000	0.557214	
mm_154044.1	chr19	53944362	53944562	-	1	NA	NA	NA	156	NM_001168505	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.050000	0.522388	
mm_143496.1	chr17	71475391	71475591	-	1	NA	NA	NA	-148	NM_028887	74355	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0.125000	0.771144	
mm_123237.1	chr14	60165836	60166036	-	1	NA	NA	NA	62979	NR_030458	751526		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA	0.005000	0.422886	61(GCTTATATGGAG,+,0.00)
mm_154647.1	chrX	7794237	7794437	+	1	NA	NA	NA	4344	NM_207670	54645	Mm.194811	NM_207670	ENSMUSG00000031153	Gripap1	AI854681|DXImx47e|GRASP-1|Sfc10|mKIAA1167	GRIP1 associated protein 1	protein-coding	0.000000	0.462687	-85(CCTTTTAGGCAC,+,0.00)
mm_18349.1	chr2	58160388	58160588	-	1	NA	NA	NA	-366	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.015000	0.437811	
mm_149142.1	chr19	9003946	9004146	+	1	NA	NA	NA	-13858	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.000000	0.467662	
mm_62965.1	chr7	119793933	119794133	+	1	NA	NA	NA	25	NM_027698	71151	Mm.274160	NM_027698	ENSMUSG00000030929	Eri2	4933424N09Rik|Exod1|mKIAA1504	exoribonuclease 2	protein-coding	0.130000	0.696517	
mm_75767.1	chr8	69974256	69974456	-	1	NA	NA	NA	27	NM_001113346	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.120000	0.741294	-3(GCCTTTAAGAGC,-,0.00),-2(CCTTTAAGAGCT,+,0.00)
mm_90376.1	chr10	127195169	127195369	+	1	NA	NA	NA	20	NR_045716	100038591	Mm.441071	NR_045715	ENSMUSG00000097331	F420014N23Rik	ENSMUSG00000074658	RIKEN cDNA F420014N23 gene	ncRNA	0.035000	0.656716	
mm_166831.1	chr7	18726932	18727132	+	1	NA	NA	NA	8942	NM_001004152	243862	Mm.389833	NM_001004152	ENSMUSG00000044903	Psg22	AA408604|cea9	pregnancy-specific glycoprotein 22	protein-coding	0.005000	0.527363	
mm_89433.1	chr10	91097035	91097235	+	1	NA	NA	NA	14096	NM_026166	67454	Mm.252843	NM_026166	ENSMUSG00000019975	Ikbip	1200009F10Rik|1700023M03Rik|D18354|Ikip	IKBKB interacting protein	protein-coding	0.005000	0.422886	
mm_3575.1	chr1	150847254	150847454	+	1	NA	NA	NA	146081	NM_001024720	545370	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.020000	0.407960	
mm_10639.1	chr2	20519706	20519906	+	1	NA	NA	NA	293	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.070000	0.636816	
mm_126911.1	chr15	90303368	90303568	+	1	NA	NA	NA	79108	NR_106106	102466838		NR_106106	ENSMUSG00000099319	Mir7648	Gm27736|mmu-mir-7648	microRNA 7648	ncRNA	0.005000	0.412935	
mm_125959.1	chr15	76266466	76266666	+	1	NA	NA	NA	-1523	NM_028852	74281	Mm.159156	NM_028852	ENSMUSG00000049653	Spatc1	1700084J23Rik|speriolin	spermatogenesis and centriole associated 1	protein-coding	0.015000	0.422886	
mm_152826.1	chr19	23136683	23136883	-	1	NA	NA	NA	-4443	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.025000	0.512438	
mm_73800.1	chr8	117275025	117275225	+	1	NA	NA	NA	18106	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.010000	0.537313	
mm_107391.1	chr12	33314209	33314409	+	1	NA	NA	NA	11794	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.025000	0.562189	-55(CTCTCTTAAAGG,-,0.00),-54(TCTCTTAAAGGG,+,0.00)
mm_165526.1	chr2	177763931	177764131	+	1	NA	NA	NA	4743	NM_001324422	626802	Mm.386029	NM_001243903	ENSMUSG00000078864	Gm14322	OTTMUSG00000016321	predicted gene 14322	protein-coding	0.005000	0.547264	
mm_134347.1	chr16	16571339	16571539	-	1	NA	NA	NA	-11220	NM_139232	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.010000	0.422886	
mm_132579.1	chr16	38346918	38347118	+	1	NA	NA	NA	19	NM_001017429	12856	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	0.085000	0.597015	
mm_4697.1	chr1	180749819	180750019	+	1	NA	NA	NA	23876	NM_133225	170760	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.000000	0.462687	45(GCTCTTATACTC,+,0.00)
mm_30011.1	chr3	135664986	135665186	-	1	NA	NA	NA	26461	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.000000	0.368159	
mm_171235.1	chr3	68902764	68902964	-	1	NA	NA	NA	33278	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.075000	0.666667	
mm_15122.1	chr2	153779131	153779331	+	1	NA	NA	NA	-1648	NR_036629	100504221	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	0.060000	0.582090	
mm_68930.1	chr7	126494137	126494337	-	1	NA	NA	NA	6882	NM_001163713	233870	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	0.005000	0.616915	
mm_26848.1	chr3	14767457	14767657	-	1	NA	NA	NA	10903	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.010000	0.398010	
mm_55114.1	chr6	50392868	50393068	-	1	NA	NA	NA	-10131	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.020000	0.497512	
mm_59203.1	chr7	24507134	24507334	+	1	NA	NA	NA	147	NR_110958	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.120000	0.671642	
mm_162093.1	chrX	37530365	37530565	+	1	NA	NA	NA	-3	NM_001085348	100040016	Mm.455498	NM_001085348	ENSMUSG00000096788	Rhox2e	ENSMUSG00000063709|OTTMUSG00000017141|Rhox2.5|Rhox2d	reproductive homeobox 2E	protein-coding	0.035000	0.482587	
mm_134372.1	chr16	17132208	17132408	-	1	NA	NA	NA	75	NM_022324	64136	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	0.090000	0.721393	
mm_120497.1	chr14	65981321	65981521	+	1	NA	NA	NA	12938	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.020000	0.557214	
mm_149102.1	chr19	8942400	8942600	+	1	NA	NA	NA	580	NM_011842	23942	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	0.110000	0.666667	
mm_11183.1	chr2	28840672	28840872	+	1	NA	NA	NA	366	NM_001033294	227674	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	0.090000	0.661692	
mm_32791.1	chr4	116877149	116877349	+	1	NA	NA	NA	-153	NM_001029912	74464	Mm.218946	NM_001029912	ENSMUSG00000033948	Zswim5	4933426E21Rik|AI503093|mKIAA1511	zinc finger SWIM-type containing 5	protein-coding	0.190000	0.825871	
mm_82058.1	chr9	122682859	122683059	+	1	NA	NA	NA	83	NR_029819	387156		NR_029819	ENSMUSG00000065414	Mir138-1	Mirn138|Mirn138-1|mir-138-1	microRNA 138-1	ncRNA	0.015000	0.562189	
mm_32435.1	chr4	107200667	107200867	+	1	NA	NA	NA	-8413	NM_001081272	546840	Mm.331755	NM_001081272	ENSMUSG00000070877	Ldlrad1	OTTMUSG00000008594	low density lipoprotein receptor class A domain containing 1	protein-coding	0.020000	0.402985	
mm_35115.1	chr4	10797711	10797911	-	1	NA	NA	NA	-9	NR_045185	73624	Mm.67392	NR_045185	ENSMUSG00000086080	1700123O12Rik	-	RIKEN cDNA 1700123O12 gene	ncRNA	0.005000	0.437811	48(GCTTTTCTAGGC,+,0.00)
mm_72056.1	chr8	71371539	71371739	+	1	NA	NA	NA	341	NM_001293800	77090	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	0.130000	0.716418	
mm_65310.1	chr7	24765878	24766078	-	1	NA	NA	NA	-5667	NM_026862	68891	Mm.292848	NM_026862	ENSMUSG00000052212	Cd177	1190003K14Rik|Pdp3	CD177 antigen	protein-coding	0.030000	0.537313	
mm_51117.1	chr6	67861035	67861235	+	1	NA	NA	NA	-295436	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.000000	0.457711	
mm_54583.1	chr6	38124482	38124682	-	1	NA	NA	NA	4	NM_080467	140494	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	0.010000	0.472637	
mm_56717.1	chr6	115488756	115488956	-	1	NA	NA	NA	-55848	NM_199033	381802	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.000000	0.437811	
mm_45698.1	chr5	82124613	82124813	-	1	NA	NA	NA	0	NR_138557	67327	Mm.87058	NR_138557		1700031L13Rik	-	RIKEN cDNA 1700031L13 gene	ncRNA	0.005000	0.333333	
mm_14716.1	chr2	143915419	143915619	+	1	NA	NA	NA	188	NM_019771	56431	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.095000	0.676617	-3(CCCTTAATAAGC,+,0.00)
mm_164739.1	chr17	72836050	72836250	-	1	NA	NA	NA	-554	NM_027166	383295	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee-like 5 (Drosophila)	protein-coding	0.040000	0.497512	
mm_97233.1	chr11	75655751	75655951	+	1	NA	NA	NA	-164	NM_001080775	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.110000	0.681592	
mm_30050.1	chr3	136325857	136326057	-	1	NA	NA	NA	109	NM_001310749	242248	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0.010000	0.606965	
mm_165739.1	chr3	107213324	107213524	-	1	NA	NA	NA	8308	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.532338	
mm_92888.1	chr10	82764045	82764245	-	1	NA	NA	NA	-4	NM_010914	18045	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	0.125000	0.721393	
mm_65985.1	chr7	30485083	30485283	-	1	NA	NA	NA	-8475	NM_019546	56189	Mm.270525	NM_019546	ENSMUSG00000036892	Prodh2	2510028N04Rik|2510038B11Rik|MmPOX|MmPOX1|POX1	proline dehydrogenase (oxidase) 2	protein-coding	0.065000	0.502488	
mm_38686.1	chr4	145122232	145122432	-	1	NA	NA	NA	68334	NM_001276502	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.000000	0.407960	
mm_948.1	chr1	57154488	57154688	+	1	NA	NA	NA	60408	NR_037990	407809	Mm.134505	NR_037990	ENSMUSG00000101429	BC055402	-	cDNA sequence BC055402	ncRNA	0.010000	0.398010	-18(CTTTTTAAAAAG,+,0.00),-18(CTTTTTAAAAAG,-,0.00)
mm_76304.1	chr8	84257218	84257418	-	1	NA	NA	NA	6	NM_026423	67873	Mm.278085	NM_026423	ENSMUSG00000004996	Mri1	2410018C20Rik	methylthioribose-1-phosphate isomerase 1	protein-coding	0.095000	0.626866	
mm_132925.1	chr16	49800434	49800634	+	1	NA	NA	NA	-55120	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.005000	0.447761	
mm_148826.1	chr19	6334943	6335143	+	1	NA	NA	NA	4	NM_008583	17283	Mm.12917	NM_008583	ENSMUSG00000024947	Men1	AW045611	multiple endocrine neoplasia 1	protein-coding	0.075000	0.656716	
mm_141768.1	chr17	34282921	34283121	-	1	NA	NA	NA	4750	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.005000	0.507463	
mm_146004.1	chr18	68692014	68692214	+	1	NA	NA	NA	-47286	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0.055000	0.427861	-77(GACTTTTAAAGT,-,0.00)
mm_17838.1	chr2	34350521	34350721	-	1	NA	NA	NA	21424	NM_001290576	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.010000	0.373134	
mm_9319.1	chr1	171648867	171649067	-	1	NA	NA	NA	32	NM_001347184	75345	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	0.030000	0.432836	
mm_109894.1	chr12	7381468	7381668	-	1	NA	NA	NA	-1238	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA	0.015000	0.412935	
mm_135206.1	chr16	36598262	36598462	-	1	NA	NA	NA	-36228	NM_013803	12374	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.015000	0.497512	-37(TGCCATAAAAGG,-,0.00)
mm_165489.1	chr2	164608832	164609032	-	1	NA	NA	NA	4454	NM_001276432	277343	Mm.383292	NM_001080550	ENSMUSG00000070533	Wfdc8	Gm706	WAP four-disulfide core domain 8	protein-coding	0.030000	0.552239	
mm_24152.1	chr3	88358189	88358389	+	1	NA	NA	NA	-6300	NM_198410	68957	Mm.441486	NM_198410	ENSMUSG00000041423	Paqr6	1500001B10Rik	progestin and adipoQ receptor family member VI	protein-coding	0.005000	0.577114	
mm_134746.1	chr16	23107892	23108092	-	1	NA	NA	NA	524	NR_110335	13682	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0.040000	0.537313	
mm_95978.1	chr11	58963699	58963899	+	1	NA	NA	NA	18	NM_031172	56631	Mm.179733	NM_031172	ENSMUSG00000036964	Trim17	Rnf16|terf	tripartite motif-containing 17	protein-coding	0.050000	0.636816	
mm_45856.1	chr5	87786529	87786729	-	1	NA	NA	NA	12179	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.005000	0.402985	
mm_34123.1	chr4	139256970	139257170	+	1	NA	NA	NA	53630	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.030000	0.522388	
mm_56626.1	chr6	112758294	112758494	-	1	NA	NA	NA	-61724	NM_001167730	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.005000	0.447761	
mm_123308.1	chr14	62293095	62293295	-	1	NA	NA	NA	-216	NM_173419	239133	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.035000	0.592040	
mm_64454.1	chr7	142659138	142659338	+	1	NA	NA	NA	-434	NM_010514	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.100000	0.716418	
mm_148207.1	chr18	80124480	80124680	-	1	NA	NA	NA	26902	NM_175028	240442	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0.010000	0.422886	
mm_135628.1	chr16	52301271	52301471	-	1	NA	NA	NA	151710	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.388060	
mm_69110.1	chr7	127021524	127021724	-	1	NA	NA	NA	-413	NM_001102563	69017	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.010000	0.527363	
mm_53204.1	chr6	125685622	125685822	+	1	NA	NA	NA	-4697	NM_153589	243634	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.000000	0.487562	
mm_90551.1	chr10	128096821	128097021	+	1	NA	NA	NA	4138	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.095000	0.751244	
mm_152908.1	chr19	26623313	26623513	-	1	NA	NA	NA	18253	NM_011416	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.015000	0.482587	
mm_52806.1	chr6	121342473	121342673	+	1	NA	NA	NA	-503	NM_001347433	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.015000	0.582090	
mm_40033.1	chr5	33658457	33658657	+	1	NA	NA	NA	429	NM_001040435	21335	Mm.379024	NM_011524	ENSMUSG00000037313	Tacc3	Aint|C86661|Eric1	transforming, acidic coiled-coil containing protein 3	protein-coding	0.085000	0.592040	
mm_104572.1	chr11	96943836	96944036	-	1	NA	NA	NA	83	NM_134021	103711	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding	0.050000	0.562189	
mm_160359.1	chr8	21665652	21665852	+	1	NA	NA	NA	-45	NM_001177528	100041952	Mm.465152	NM_001177528	ENSMUSG00000063206	Defa34	ENSMUSG00000063206|Gm15315|OTTMUSG00000019924	defensin, alpha, 34	protein-coding	0.000000	0.507463	-32(CCCTATAAATGC,+,0.00),-32(CCCTATAAATGC,-,0.00)
mm_36751.1	chr4	101185283	101185483	-	1	NA	NA	NA	79899	NM_146145	16451	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.010000	0.492537	
mm_120042.1	chr14	56567637	56567837	+	1	NA	NA	NA	4109	NM_001014996	219103	Mm.212525	NM_001014996	ENSMUSG00000064128	Cenpj	4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4	centromere protein J	protein-coding	0.025000	0.502488	
mm_90229.1	chr10	121369030	121369230	+	1	NA	NA	NA	4040	NM_029364	75612	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.030000	0.522388	
mm_61676.1	chr7	80862136	80862336	+	1	NA	NA	NA	128	NM_009553	22691	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0.000000	0.407960	
mm_100217.1	chr11	117076704	117076904	+	1	NA	NA	NA	21	NR_027059	76972	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0.105000	0.646766	
mm_63529.1	chr7	127967389	127967589	+	1	NA	NA	NA	10	NM_139149	233908	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0.140000	0.696517	
mm_64309.1	chr7	141864064	141864264	+	1	NA	NA	NA	25092	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.015000	0.497512	
mm_55447.1	chr6	67267311	67267511	-	1	NA	NA	NA	432	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.125000	0.716418	
mm_73035.1	chr8	94214453	94214653	+	1	NA	NA	NA	-48	NM_172410	71805	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0.120000	0.691542	
mm_38252.1	chr4	136687940	136688140	-	1	NA	NA	NA	65419	NM_001243262	242707	Mm.448979	NM_001243262	ENSMUSG00000070683	Lactbl1	-	lactamase, beta-like 1	protein-coding	0.020000	0.562189	
mm_39737.1	chr5	29377692	29377892	+	1	NA	NA	NA	598	NM_020295	56873	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0.030000	0.542289	
mm_164317.1	chr16	3706715	3706915	-	1	NA	NA	NA	11309	NM_001161790	54483	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.020000	0.422886	
mm_106396.1	chr11	118797669	118797869	-	1	NA	NA	NA	-36728	NM_001285438	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.000000	0.388060	
mm_115503.1	chr13	4150543	4150743	-	1	NA	NA	NA	3	NM_001346535	105349	Mm.41337	NM_134066	ENSMUSG00000021214	Akr1c18	AW146047	aldo-keto reductase family 1, member C18	protein-coding	0.015000	0.447761	
mm_57908.1	chr6	132441649	132441849	-	1	NA	NA	NA	-77614	NM_053251	114600	Mm.428480	NM_053251		Gm4736	EG114600|Mp4|Mp6	predicted gene 4736	protein-coding	0.000000	0.472637	-35(TTCCTTATAAAG,-,0.00),-33(CCTTATAAAGAC,+,0.00)
mm_118670.1	chr14	22019700	22019900	+	1	NA	NA	NA	88	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.080000	0.686567	
mm_111930.1	chr12	108888438	108888638	-	1	NA	NA	NA	4660	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.025000	0.537313	
mm_17423.1	chr2	27447327	27447527	-	1	NA	NA	NA	3203	NR_106102	102466836		NR_106102	ENSMUSG00000098812	Mir7578	Gm27789|mmu-mir-7578	microRNA 7578	ncRNA	0.030000	0.442786	
mm_155320.1	chrX	62287079	62287279	+	1	NA	NA	NA	37	NM_001199996	74437	Mm.85792	NM_001199996	ENSMUSG00000045330	4933402E13Rik	-	RIKEN cDNA 4933402E13 gene	protein-coding	0.020000	0.527363	
mm_20473.1	chr2	129478039	129478239	-	1	NA	NA	NA	58463	NM_177653	228592	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	0.000000	0.542289	
mm_111588.1	chr12	101971757	101971957	-	1	NA	NA	NA	-4117	NM_016856	51786	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.010000	0.358209	-75(CAGTTTAAAAAG,-,0.00),-73(GTTTAAAAAGGG,+,0.00)
mm_32424.1	chr4	107126607	107126807	+	1	NA	NA	NA	29816	NM_172873	242603	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	0.035000	0.567164	
mm_155198.1	chrX	56609674	56609874	+	1	NA	NA	NA	-61	NM_172780	236794	Mm.17815	NM_172780	ENSMUSG00000060681	Slc9a6	3732426M05|6430520C02Rik|NHE6|mKIAA0267	solute carrier family 9 (sodium/hydrogen exchanger), member 6	protein-coding	0.065000	0.721393	
mm_87567.1	chr10	56377346	56377546	+	1	NA	NA	NA	146	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.020000	0.452736	
mm_108209.1	chr12	76916330	76916530	+	1	NA	NA	NA	45818	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.040000	0.542289	
mm_28803.1	chr3	96220790	96220990	-	1	NA	NA	NA	-10	NM_175662	319176	Mm.358954	NM_175662	ENSMUSG00000068855	Hist2h2ac	H2a-613b	histone cluster 2, H2ac	protein-coding	0.040000	0.532338	-37(GCGCCTATAAAG,-,0.00),-35(GCCTATAAAGGC,+,0.00),-35(GCCTATAAAGGC,-,0.00)
mm_38904.1	chr4	149954909	149955109	-	1	NA	NA	NA	-3	NM_029035	74646	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	0.120000	0.691542	
mm_105163.1	chr11	101626842	101627042	-	1	NA	NA	NA	-1007	NM_025654	66599	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.030000	0.477612	
mm_54465.1	chr6	34906719	34906919	-	1	NA	NA	NA	4012	NM_001013366	101240	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.005000	0.497512	
mm_40984.1	chr5	77265402	77265602	+	1	NA	NA	NA	8	NM_011263	19712	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.205000	0.835821	
mm_164142.1	chr15	59275296	59275496	+	1	NA	NA	NA	-31552	NR_045613	100416830	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0.005000	0.507463	
mm_39552.1	chr5	21786698	21786898	+	1	NA	NA	NA	1515	NM_011188	19181	Mm.2462	NM_011188	ENSMUSG00000028932	Psmc2	-	proteasome (prosome, macropain) 26S subunit, ATPase 2	protein-coding	0.090000	0.606965	
mm_7376.1	chr1	106796600	106796800	-	1	NA	NA	NA	25	NM_009190	20479	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	0.085000	0.587065	
mm_5781.1	chr1	51584881	51585081	-	1	NA	NA	NA	-106582	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.015000	0.462687	
mm_112801.1	chr13	20472977	20473177	+	1	NA	NA	NA	87	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.020000	0.517413	
mm_80900.1	chr9	100022222	100022422	+	1	NA	NA	NA	22	NR_040763	108970	Mm.390215	NR_040763	ENSMUSG00000101584	4930519F24Rik	-	RIKEN cDNA 4930519F24 gene	ncRNA	0.005000	0.353234	
mm_110115.1	chr12	26443725	26443925	-	1	NA	NA	NA	12627	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.005000	0.398010	
mm_150873.1	chr19	45055469	45055669	+	1	NA	NA	NA	7993	NM_001178013	94280	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.015000	0.537313	
mm_84716.1	chr9	73831185	73831385	-	1	NA	NA	NA	102282	NM_001081153	208898	Mm.41035	NM_001081153	ENSMUSG00000062151	Unc13c	1500037O19Rik|AU019458|D9Ertd414e|Munc13-3|Unc13h3	unc-13 homolog C (C. elegans)	protein-coding	0.000000	0.253731	
mm_148623.1	chr19	5425047	5425247	+	1	NA	NA	NA	3	NM_001256515	107242	Mm.329658	NM_134149	ENSMUSG00000047423	AI837181	Bles03|N28173	expressed sequence AI837181	protein-coding	0.120000	0.746269	
mm_28388.1	chr3	90016725	90016925	-	1	NA	NA	NA	-5615	NR_106129	102465771		NR_106129	ENSMUSG00000098397	Mir7669	Gm27996|mmu-mir-7669	microRNA 7669	ncRNA	0.010000	0.388060	
mm_117042.1	chr13	58358658	58358858	-	1	NA	NA	NA	-3896	NM_175214	75050	Mm.446094	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	0.105000	0.661692	
mm_169957.1	chr16	90416896	90417096	+	1	NA	NA	NA	30599	NM_015755	26559	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.000000	0.507463	
mm_73560.1	chr8	109377755	109377955	+	1	NA	NA	NA	-36947	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo	0.015000	0.502488	
mm_142403.1	chr17	45458777	45458977	-	1	NA	NA	NA	16061	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.010000	0.502488	-33(AGTTTTATAAGG,-,0.00)
mm_144924.1	chr18	37685159	37685359	+	1	NA	NA	NA	-141	NM_033587	93712	Mm.247203	NM_033587	ENSMUSG00000103677	Pcdhga4	-	protocadherin gamma subfamily A, 4	protein-coding	0.015000	0.482587	
mm_25815.1	chr3	127791071	127791271	+	1	NA	NA	NA	1258	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.030000	0.437811	68(CCCTTTAAACCG,+,0.00)
mm_8040.1	chr1	135265262	135265462	-	1	NA	NA	NA	-6890	NM_007921	13710	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0.015000	0.547264	
mm_132683.1	chr16	42955499	42955699	+	1	NA	NA	NA	19	NR_002445	170658	Mm.375824	NR_002445		BC002163	-	NADH dehydrogenase Fe-S protein 5 pseudogene	pseudo	0.040000	0.487562	
mm_110440.1	chr12	50355933	50356133	-	1	NA	NA	NA	293190	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding	0.010000	0.323383	
mm_67048.1	chr7	67293364	67293564	-	1	NA	NA	NA	70848	NM_001191051	75099	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.000000	0.398010	
mm_170437.1	chr18	80019162	80019362	+	1	NA	NA	NA	-27633	NM_053117	93737	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0.025000	0.542289	
mm_101533.1	chr11	33203494	33203694	-	1	NA	NA	NA	-6	NM_019916	27140	Mm.25362	NM_019916	ENSMUSG00000040610	Tlx3	Hox11l2|Rnx|Tlx1l2	T cell leukemia, homeobox 3	protein-coding	0.080000	0.621891	
mm_134345.1	chr16	16565538	16565738	-	1	NA	NA	NA	-5419	NM_139232	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.000000	0.398010	
mm_125775.1	chr15	74636286	74636486	+	1	NA	NA	NA	-68	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.005000	0.512438	
mm_90146.1	chr10	118141454	118141654	+	1	NA	NA	NA	-233	NM_001162904	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.065000	0.631841	
mm_134383.1	chr16	17201370	17201570	-	1	NA	NA	NA	22	NM_009456	22195	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0.075000	0.666667	
mm_29689.1	chr3	123085837	123086037	-	1	NA	NA	NA	-50950	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.020000	0.512438	
mm_112233.1	chr12	113482233	113482433	-	1	NA	NA	NA	-7232	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.527363	
mm_101064.1	chr11	9873646	9873846	-	1	NA	NA	NA	681804	NM_178259	268379	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.000000	0.348259	
mm_155966.1	chrX	106045758	106045958	+	1	NA	NA	NA	18634	NM_009726	11977	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	0.000000	0.457711	-46(CCATTTAGGGCT,+,0.00)
mm_25087.1	chr3	100692356	100692556	+	1	NA	NA	NA	-6983	NM_010763	17156	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0.035000	0.427861	
mm_134874.1	chr16	28911718	28911918	-	1	NA	NA	NA	17880	NM_177718	239796	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.025000	0.457711	
mm_40583.1	chr5	64156444	64156644	+	1	NA	NA	NA	-3716	NM_019636	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.025000	0.447761	
mm_169407.1	chr14	5148934	5149134	+	1	NA	NA	NA	-14608	NM_001256885	100041735	Mm.464176	NM_001256885	ENSMUSG00000095295	Gm3488	100041747|Gm3494	predicted gene, 3488	protein-coding	0.120000	0.761194	
mm_133041.1	chr16	57449040	57449240	+	1	NA	NA	NA	95863	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.015000	0.467662	
mm_39716.1	chr5	28032810	28033010	+	1	NA	NA	NA	-38502	NM_153526	231070	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.015000	0.557214	
mm_8493.1	chr1	153850940	153851140	-	1	NA	NA	NA	155	NM_178243	240817	Mm.439405	NM_178243	ENSMUSG00000045968	Teddm2	5830403L16Rik|AJ554213|Me9|e92	transmembrane epididymal family member 2	protein-coding	0.020000	0.477612	
mm_156057.1	chrX	109150048	109150248	+	1	NA	NA	NA	-46608	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.010000	0.407960	
mm_17381.1	chr2	27019973	27020173	-	1	NA	NA	NA	7925	NM_172659	227659	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.005000	0.562189	
mm_103164.1	chr11	70455244	70455444	-	1	NA	NA	NA	3413	NM_025397	66172	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0.010000	0.502488	
mm_31550.1	chr4	55744479	55744679	+	1	NA	NA	NA	-212104	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.030000	0.472637	-94(TGCTAGAAAAGC,-,0.00)
mm_45888.1	chr5	88527708	88527908	-	1	NA	NA	NA	89	NM_152839	16069	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	0.005000	0.477612	-34(CCTCTTATAGAC,+,0.00),-32(TCTTATAGACAC,+,0.00)
mm_19699.1	chr2	103761132	103761332	-	1	NA	NA	NA	18	NM_153126	98956	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.085000	0.592040	
mm_148290.1	chr18	82584163	82584363	-	1	NA	NA	NA	29755	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.060000	0.507463	
mm_136975.1	chr17	15758480	15758680	+	1	NA	NA	NA	53613	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.005000	0.308458	
mm_39482.1	chr5	20882016	20882216	+	1	NA	NA	NA	8	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.160000	0.786070	
mm_102914.1	chr11	69579283	69579483	-	1	NA	NA	NA	-59	NM_144824	216853	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	0.070000	0.577114	
mm_33339.1	chr4	129287529	129287729	+	1	NA	NA	NA	8	NM_023485	68828	Mm.132243	NM_023485	ENSMUSG00000001333	Sync	1110057H03Rik|SNIP4	syncoilin	protein-coding	0.140000	0.756219	
mm_561.1	chr1	38022183	38022383	+	1	NA	NA	NA	24273	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.015000	0.452736	
mm_116285.1	chr13	34993974	34994174	-	1	NA	NA	NA	70	NM_011868	23986	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0.065000	0.651741	
mm_69618.1	chr7	137313553	137313753	-	1	NA	NA	NA	792	NM_001113415	13593	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.105000	0.696517	
mm_126460.1	chr15	80952376	80952576	+	1	NA	NA	NA	3986	NM_009634	11564	Mm.38151	NM_009634	ENSMUSG00000022407	Adsl	Adl|Asl	adenylosuccinate lyase	protein-coding	0.020000	0.462687	-42(GCCTTTATAGTG,+,0.00)
mm_117830.1	chr13	98316665	98316865	-	1	NA	NA	NA	202	NM_145455	218490	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	0.125000	0.741294	
mm_82655.1	chr9	22051924	22052124	-	1	NA	NA	NA	-1	NM_010487	15571	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	protein-coding	0.115000	0.746269	-37(GCCTCTATAAAG,-,0.00),-35(CTCTATAAAGGG,+,0.00),-35(CTCTATAAAGGG,-,0.00)
mm_42951.1	chr5	123015190	123015390	+	1	NA	NA	NA	216	NM_175423	109305	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.140000	0.786070	
mm_108110.1	chr12	75308435	75308635	+	1	NA	NA	NA	222	NM_023275	80837	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	0.025000	0.532338	
mm_130268.1	chr15	96691101	96691301	-	1	NA	NA	NA	8497	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.045000	0.462687	
mm_171897.1	chr5	41832508	41832708	-	1	NA	NA	NA	11707	NM_001310601	665775	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0.010000	0.482587	
mm_59806.1	chr7	29155581	29155781	+	1	NA	NA	NA	529	NM_001146023	73833	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	0.115000	0.741294	
mm_35233.1	chr4	19709011	19709211	-	1	NA	NA	NA	-107	NR_074090	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.140000	0.766169	
mm_167319.1	chr8	66386356	66386556	+	1	NA	NA	NA	155	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.005000	0.407960	
mm_49493.1	chr6	29735409	29735609	+	1	NA	NA	NA	12	NM_176996	319757	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	0.105000	0.746269	
mm_132353.1	chr16	34175701	34175901	+	1	NA	NA	NA	-208798	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.020000	0.537313	
mm_108470.1	chr12	83642554	83642754	+	1	NA	NA	NA	10420	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.005000	0.472637	
mm_123543.1	chr14	66824525	66824725	-	1	NA	NA	NA	43975	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.000000	0.422886	
mm_38344.1	chr4	137769604	137769804	-	1	NA	NA	NA	-3229	NM_001287172	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.015000	0.522388	
mm_78107.1	chr9	20581215	20581415	+	1	NA	NA	NA	-13	NM_172919	244721	Mm.86627	NM_172919	ENSMUSG00000058192	Zfp846	2210010B09Rik|9130221F13|Znf846	zinc finger protein 846	protein-coding	0.055000	0.552239	
mm_43807.1	chr5	142904052	142904252	+	1	NA	NA	NA	2602	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.010000	0.472637	
mm_63710.1	chr7	130692454	130692654	+	1	NA	NA	NA	-2	NM_001347637	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.040000	0.587065	32(GGCTTTAAGAGA,-,0.00),33(GCTTTAAGAGAA,+,0.00)
mm_170291.1	chr18	3005170	3005370	+	1	NA	NA	NA	118142	NM_001167539	100312476	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.010000	0.467662	
mm_80280.1	chr9	73039628	73039828	+	1	NA	NA	NA	10	NM_001308425	66364	Mm.392089	NM_001308425		2310009A05Rik	5031420N21Rik	RIKEN cDNA 2310009A05 gene	protein-coding	0.065000	0.567164	
mm_115512.1	chr13	4756313	4756513	-	1	NA	NA	NA	-147249	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.000000	0.462687	
mm_14595.1	chr2	136058110	136058310	+	1	NA	NA	NA	283	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.065000	0.641791	
mm_99698.1	chr11	106156116	106156316	+	1	NA	NA	NA	3926	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.000000	0.432836	
mm_72581.1	chr8	84201680	84201880	+	1	NA	NA	NA	-6738	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.040000	0.641791	
mm_8904.1	chr1	163312322	163312522	-	1	NA	NA	NA	1228	NM_011127	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.075000	0.711443	
mm_74348.1	chr8	127540617	127540817	+	1	NA	NA	NA	241065	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.005000	0.293532	
mm_42650.1	chr5	118764912	118765112	+	1	NA	NA	NA	-187327	NR_040694	74627	Mm.410828	NR_040694	ENSMUSG00000107144	4930413E15Rik	-	RIKEN cDNA 4930413E15 gene	ncRNA	0.015000	0.402985	
mm_48449.1	chr5	140701958	140702158	-	1	NA	NA	NA	320	NM_028833	74239	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	0.120000	0.736318	
mm_72616.1	chr8	84623561	84623761	+	1	NA	NA	NA	39191	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.005000	0.507463	
mm_71060.1	chr8	33913287	33913487	+	1	NA	NA	NA	16476	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.000000	0.572139	
mm_12726.1	chr2	78845384	78845584	+	1	NA	NA	NA	-23563	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.030000	0.452736	
mm_40990.1	chr5	77268647	77268847	+	1	NA	NA	NA	3253	NM_011263	19712	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.050000	0.492537	
mm_75574.1	chr8	60954773	60954973	-	1	NA	NA	NA	-74	NM_173876	12725	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0.035000	0.457711	-100(TACTATTAAAAC,-,0.00)
mm_99699.1	chr11	106159566	106159766	+	1	NA	NA	NA	476	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.030000	0.626866	
mm_171963.1	chr5	85173676	85173876	-	1	NA	NA	NA	-756394	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.035000	0.537313	
mm_165736.1	chr3	107173698	107173898	+	1	NA	NA	NA	-9345	NM_001081140	242151	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	0.000000	0.323383	
mm_7837.1	chr1	132200213	132200413	-	1	NA	NA	NA	2225	NR_029777	723818		NR_029777	ENSMUSG00000065435	Mir135b	Mirn135b|mir-135b	microRNA 135b	ncRNA	0.025000	0.477612	-34(TCCCCTAAAAAG,-,0.00),-32(CCCTAAAAAGAG,+,0.00)
mm_155102.1	chrX	48341965	48342165	+	1	NA	NA	NA	707	NM_178782	320376	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	0.140000	0.791045	
mm_84115.1	chr9	58454731	58454931	-	1	NA	NA	NA	-342	NR_040736	74879	Mm.416924	NR_040736	ENSMUSG00000097651	4930461G14Rik	-	RIKEN cDNA 4930461G14 gene	ncRNA	0.030000	0.457711	-22(CTGTATAAAAAC,-,0.00)
mm_87874.1	chr10	61482179	61482379	+	1	NA	NA	NA	6446	NM_153542	216011	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0.025000	0.582090	
mm_70793.1	chr8	22593744	22593944	+	1	NA	NA	NA	-31	NM_011696	22335	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	0.190000	0.810945	
mm_48625.1	chr5	145132785	145132985	-	1	NA	NA	NA	7204	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.030000	0.542289	
mm_60628.1	chr7	44748546	44748746	+	1	NA	NA	NA	17	NM_133945	101568	Mm.28816	NM_133945	ENSMUSG00000002205	Vrk3	AI428238	vaccinia related kinase 3	protein-coding	0.090000	0.631841	
mm_150939.1	chr19	46306001	46306201	+	1	NA	NA	NA	171	NM_001177370	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.020000	0.537313	
mm_167245.1	chr8	22506124	22506324	+	1	NA	NA	NA	-29345	NM_001146117	102032	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	0.015000	0.442786	
mm_104668.1	chr11	97657896	97658096	-	1	NA	NA	NA	-5416	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.015000	0.492537	
mm_44.1	chr1	6489131	6489331	+	1	NA	NA	NA	2000	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.010000	0.412935	
mm_158448.1	chrX	140543003	140543203	-	1	NA	NA	NA	84	NM_010286	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.025000	0.562189	
mm_102607.1	chr11	62433548	62433748	-	1	NA	NA	NA	4867	NM_001252313	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.020000	0.422886	
mm_44291.1	chr5	8368152	8368352	-	1	NA	NA	NA	-92	NM_001310439	11496	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.075000	0.671642	
mm_34428.1	chr4	145564530	145564730	+	1	NA	NA	NA	-20570	NM_001324416	433801	Mm.276881	NM_001013808	ENSMUSG00000078502	Gm13212	OTTMUSG00000010965	predicted gene 13212	protein-coding	0.010000	0.477612	
mm_32479.1	chr4	107879714	107879914	+	1	NA	NA	NA	59	NM_001282737	17149	Mm.808	NM_001282737	ENSMUSG00000028609	Magoh	Mago-m|Mos2	mago homolog, exon junction complex core component	protein-coding	0.085000	0.552239	
mm_95512.1	chr11	52004224	52004424	+	1	NA	NA	NA	103	NM_001166653	213084	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	0.105000	0.711443	
mm_123267.1	chr14	61360243	61360443	-	1	NA	NA	NA	102	NM_026598	68177	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0.095000	0.726368	
mm_54316.1	chr6	30174637	30174837	-	1	NA	NA	NA	-612	NR_126541	101447999		NR_126540		Mirc35hg	-	microRNA cluster 35, host gene	ncRNA	0.050000	0.676617	
mm_118063.1	chr13	102894914	102895114	-	1	NA	NA	NA	134759	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.025000	0.487562	
mm_142445.1	chr17	45592334	45592534	-	1	NA	NA	NA	-41	NM_022880	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.020000	0.587065	-90(GCTTATAAACTG,+,0.00)
mm_48732.1	chr5	147431241	147431441	-	1	NA	NA	NA	761	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.100000	0.691542	
mm_111417.1	chr12	91571741	91571941	-	1	NA	NA	NA	17808	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.005000	0.388060	
mm_101560.1	chr11	33993053	33993253	-	1	NA	NA	NA	40	NM_001190886	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.030000	0.582090	
mm_80773.1	chr9	95560999	95561199	+	1	NA	NA	NA	1282	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.020000	0.487562	
mm_61858.1	chr7	88309589	88309789	+	1	NA	NA	NA	31604	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.010000	0.467662	
mm_6295.1	chr1	71030086	71030286	-	1	NA	NA	NA	72786	NM_007525	12021	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	ENSMUSG00000060893|ENSMUSG00000073653	BRCA1 associated RING domain 1	protein-coding	0.010000	0.343284	
mm_1758.1	chr1	75521714	75521914	+	1	NA	NA	NA	285	NM_027886	71728	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	0.065000	0.597015	
mm_113019.1	chr13	22006441	22006641	+	1	NA	NA	NA	3200	NM_019429	54373	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0.035000	0.582090	
mm_122893.1	chr14	54949805	54950005	-	1	NA	NA	NA	-763	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.010000	0.567164	
mm_48939.1	chr6	4539371	4539571	+	1	NA	NA	NA	33853	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.025000	0.457711	-42(GTCTATTTAAGA,-,0.00)
mm_86816.1	chr10	20562154	20562354	+	1	NA	NA	NA	-13926	NM_001347366	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.010000	0.462687	
mm_115850.1	chr13	21287465	21287665	-	1	NA	NA	NA	5121	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.015000	0.492537	
mm_39204.1	chr4	156031565	156031765	-	1	NA	NA	NA	5323	NM_021985	21936	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	0.025000	0.562189	
mm_140134.1	chr17	79626555	79626755	+	1	NA	NA	NA	11755	NM_201361	381110	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.025000	0.487562	
mm_58754.1	chr7	13324558	13324758	+	1	NA	NA	NA	-1009	NM_001168504	232889	Mm.223639	NM_001004762	ENSMUSG00000033847	Pla2g4c	D7Ertd445e	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding	0.000000	0.432836	-97(TCCTTTAAATGC,-,0.00),75(CCTTTTATATGT,+,0.00)
mm_170549.1	chr19	4064351	4064551	-	1	NA	NA	NA	-5157	NM_144869	225884	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.015000	0.577114	
mm_37508.1	chr4	123841923	123842123	-	1	NA	NA	NA	54148	NM_183163	230726	Mm.37334	NM_183163	ENSMUSG00000043333	Rhbdl2	9130416B15|RRP2	rhomboid, veinlet-like 2 (Drosophila)	protein-coding	0.080000	0.671642	
mm_30793.1	chr4	19709231	19709431	+	1	NA	NA	NA	-327	NR_074090	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.045000	0.606965	
mm_93782.1	chr10	120476650	120476850	-	1	NA	NA	NA	-281	NM_010441	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0.055000	0.601990	
mm_48771.1	chr5	148489280	148489480	-	1	NA	NA	NA	63408	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.020000	0.567164	
mm_154413.1	chrM	15374	15574	+	1	NA	NA	NA	NA	NA									0.005000	0.298507	
mm_111720.1	chr12	103732449	103732649	-	1	NA	NA	NA	5640	NM_009244	20701	Mm.439692	NM_009244	ENSMUSG00000071178	Serpina1b	D12Ucla2|Dom2|PI2|Spi1-2	serine (or cysteine) preptidase inhibitor, clade A, member 1B	protein-coding	0.005000	0.537313	
mm_65277.1	chr7	24333864	24334064	-	1	NA	NA	NA	1	NM_001163810	69301	Mm.144202	NM_027028	ENSMUSG00000055826	Tescl	1700008P20Rik	tescalcin-like	protein-coding	0.055000	0.572139	
mm_59178.1	chr7	24459947	24460147	+	1	NA	NA	NA	-2436	NM_011113	18793	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.000000	0.582090	
mm_56438.1	chr6	97431363	97431563	-	1	NA	NA	NA	27823	NM_001346639	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.025000	0.572139	
mm_67221.1	chr7	74502058	74502258	-	1	NA	NA	NA	52622	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.000000	0.432836	
mm_170757.1	chr2	157135058	157135258	-	1	NA	NA	NA	64	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.085000	0.671642	
mm_157028.1	chrX	7899146	7899346	-	1	NA	NA	NA	23	NM_001252529	54633	Mm.14616	NM_019478	ENSMUSG00000031157	Pqbp1	PQBP-1|Sfc2|npw38	polyglutamine binding protein 1	protein-coding	0.055000	0.532338	
mm_110919.1	chr12	76264785	76264985	-	1	NA	NA	NA	9653	NM_138745	108156	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0.010000	0.547264	
mm_54662.1	chr6	39196601	39196801	-	1	NA	NA	NA	10072	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.005000	0.497512	
mm_2856.1	chr1	131674981	131675181	+	1	NA	NA	NA	-13614	NM_145509	226421	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0.010000	0.442786	
mm_164274.1	chr15	101742936	101743136	-	1	NA	NA	NA	61	NM_019956	56735	Mm.358677	NM_019956	ENSMUSG00000051879	Krt71	AA589543|Ca|Cal4|Cu|Krt2-6g|mK6irs|mK6irs1	keratin 71	protein-coding	0.020000	0.577114	
mm_169231.1	chr13	6778303	6778503	+	1	NA	NA	NA	-129632	NM_001291071	56421	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.025000	0.432836	-8(CCATTAATAGAG,+,0.00)
mm_165218.1	chr2	42823572	42823772	+	1	NA	NA	NA	-170074	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding	0.010000	0.363184	
mm_147237.1	chr18	38284243	38284443	-	1	NA	NA	NA	58	NM_017378	53601	Mm.12862	NM_017378	ENSMUSG00000024440	Pcdh12	Pcdh14|VE-cad-2	protocadherin 12	protein-coding	0.010000	0.492537	
mm_118116.1	chr13	104036409	104036609	-	1	NA	NA	NA	73105	NM_029447	75805	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	0.005000	0.422886	
mm_124728.1	chr15	6580299	6580499	+	1	NA	NA	NA	552	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.030000	0.507463	
mm_106984.1	chr12	9580762	9580962	+	1	NA	NA	NA	6420	NM_011859	23967	Mm.45055	NM_011859	ENSMUSG00000048387	Osr1	Odd1|Osr	odd-skipped related 1 (Drosophila)	protein-coding	0.055000	0.542289	
mm_77288.1	chr8	116921285	116921485	-	1	NA	NA	NA	51	NM_026844	66531	Mm.4011	NM_026844	ENSMUSG00000014633	Cmc2	1110046L09Rik|2310061C15Rik|DC13	COX assembly mitochondrial protein 2	protein-coding	0.085000	0.631841	
mm_53518.1	chr6	136470477	136470677	+	1	NA	NA	NA	-48274	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.010000	0.537313	
mm_92391.1	chr10	76596567	76596767	-	1	NA	NA	NA	21019	NM_080845	14317	Mm.36278	NM_080845	ENSMUSG00000001155	Ftcd	-	formiminotransferase cyclodeaminase	protein-coding	0.065000	0.621891	
mm_147838.1	chr18	62596223	62596423	-	1	NA	NA	NA	-59	NM_001001803	408198	Mm.478742	NM_001001803	ENSMUSG00000060201	Spink7	EG408198|Ecg2	serine peptidase inhibitor, Kazal type 7 (putative)	protein-coding	0.030000	0.547264	-35(TGCCATATAAAC,-,0.00)
mm_51250.1	chr6	71831268	71831468	+	1	NA	NA	NA	48	NM_001253688	76614	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	0.130000	0.736318	
mm_57421.1	chr6	124913850	124914050	-	1	NA	NA	NA	-2245	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.025000	0.597015	
mm_58369.1	chr6	148901070	148901270	-	1	NA	NA	NA	-4933	NM_181541	232560	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	0.040000	0.492537	
mm_18043.1	chr2	39005500	39005700	-	1	NA	NA	NA	-469	NM_025592	66489	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0.055000	0.472637	
mm_31922.1	chr4	85388132	85388332	+	1	NA	NA	NA	182776	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.000000	0.373134	
mm_104621.1	chr11	97287650	97287850	-	1	NA	NA	NA	-7174	NM_008942	19155	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0.000000	0.328358	
mm_162781.1	chr10	69872076	69872276	+	1	NA	NA	NA	-53356	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.020000	0.522388	
mm_18398.1	chr2	60253458	60253658	-	1	NA	NA	NA	30926	NM_025422	66205	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.000000	0.388060	
mm_35437.1	chr4	38812763	38812963	-	1	NA	NA	NA	-637430	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0.005000	0.338308	
mm_682.1	chr1	40504595	40504795	+	1	NA	NA	NA	-10667	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.015000	0.407960	
mm_12160.1	chr2	62147714	62147914	+	1	NA	NA	NA	101299	NM_033552	94229	Mm.314497	NM_033552	ENSMUSG00000026904	Slc4a10	NCBE|mKIAA4136	solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	protein-coding	0.010000	0.502488	
mm_168194.1	chr10	63421637	63421837	-	1	NA	NA	NA	-8361	NM_177612	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.080000	0.527363	
mm_108944.1	chr12	102282958	102283158	+	1	NA	NA	NA	-16	NM_177620	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.120000	0.736318	
mm_46772.1	chr5	112326152	112326352	-	1	NA	NA	NA	-117	NM_018783	54723	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	0.110000	0.671642	
mm_12645.1	chr2	74727096	74727296	+	1	NA	NA	NA	1126	NR_029566	387144		NR_029566	ENSMUSG00000065500	Mir10b	Mirn10b|mir-10b|mmu-mir-10b	microRNA 10b	ncRNA	0.020000	0.407960	
mm_83255.1	chr9	42401587	42401787	-	1	NA	NA	NA	-1758	NM_001324548	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.015000	0.547264	
mm_149093.1	chr19	8929468	8929668	+	1	NA	NA	NA	-126	NM_144872	225898	Mm.31008	NM_144872	ENSMUSG00000071647	Eml3	BC022146	echinoderm microtubule associated protein like 3	protein-coding	0.085000	0.741294	
mm_49127.1	chr6	8545227	8545427	+	1	NA	NA	NA	25269	NM_001286729	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.000000	0.268657	
mm_146651.1	chr18	11051346	11051546	-	1	NA	NA	NA	-1064	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.045000	0.502488	
mm_121670.1	chr14	12466831	12467031	-	1	NA	NA	NA	-121066	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	0.000000	0.333333	
mm_3540.1	chr1	150395147	150395347	+	1	NA	NA	NA	-2192	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.010000	0.427861	
mm_44030.1	chr5	147430637	147430837	+	1	NA	NA	NA	157	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.160000	0.756219	
mm_164955.1	chr19	5569268	5569468	+	1	NA	NA	NA	1294	NM_001033448	381201	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0.040000	0.661692	
mm_94400.1	chr11	5628662	5628862	+	1	NA	NA	NA	59078	NM_023816	76389	Mm.67300	NM_023816	ENSMUSG00000020481	Ankrd36	1700008J08Rik|1700012M14Rik|Ankrd48	ankyrin repeat domain 36	protein-coding	0.035000	0.542289	
mm_97585.1	chr11	78945574	78945774	+	1	NA	NA	NA	20383	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.025000	0.532338	
mm_90076.1	chr10	116418027	116418227	+	1	NA	NA	NA	6	NR_028107	67342	Mm.245800	NM_026098	ENSMUSG00000020164	Kcnmb4os1	1700058G18Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1	ncRNA	0.050000	0.621891	
mm_81244.1	chr9	107972007	107972207	+	1	NA	NA	NA	-3460	NM_023738	74153	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0.010000	0.512438	
mm_61031.1	chr7	49526283	49526483	+	1	NA	NA	NA	110452	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.000000	0.398010	
mm_103633.1	chr11	78949101	78949301	-	1	NA	NA	NA	23910	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.020000	0.527363	
mm_102883.1	chr11	69410602	69410802	-	1	NA	NA	NA	2973	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.050000	0.582090	
mm_95711.1	chr11	54507183	54507383	+	1	NA	NA	NA	-15562	NM_001252494	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.015000	0.437811	-91(TTTTATATGGCC,+,0.00)
mm_62880.1	chr7	114753735	114753935	+	1	NA	NA	NA	8069	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	0.005000	0.472637	
mm_114970.1	chr13	97240356	97240556	+	1	NA	NA	NA	-649	NM_007930	13803	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.045000	0.611940	
mm_131994.1	chr16	25048277	25048477	+	1	NA	NA	NA	-11262	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.005000	0.412935	
mm_84762.1	chr9	75599013	75599213	-	1	NA	NA	NA	20	NM_001038710	50876	Mm.291880	NM_016711	ENSMUSG00000032186	Tmod2	N-Tmod|NTMOD	tropomodulin 2	protein-coding	0.005000	0.398010	
mm_113207.1	chr13	25056080	25056280	+	1	NA	NA	NA	176	NM_177577	195208	Mm.284719	NM_177577	ENSMUSG00000035910	Dcdc2a	AW492955|Dcdc2|RU2	doublecortin domain containing 2a	protein-coding	0.090000	0.666667	
mm_99903.1	chr11	109667515	109667715	+	1	NA	NA	NA	16694	NM_001313976	19084	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.060000	0.587065	
mm_28602.1	chr3	94582570	94582770	-	1	NA	NA	NA	46	NM_001082484	76742	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.125000	0.746269	
mm_38343.1	chr4	137769569	137769769	-	1	NA	NA	NA	-3194	NM_001287172	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.020000	0.542289	
mm_146999.1	chr18	34372365	34372565	-	1	NA	NA	NA	950	NM_007874	13476	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0.035000	0.552239	
mm_160582.1	chr9	63146895	63147095	-	1	NA	NA	NA	-15	NM_172446	207667	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.065000	0.671642	
mm_47939.1	chr5	135351175	135351375	-	1	NA	NA	NA	-1231	NM_001277891	94244	Mm.26037	NM_033571	ENSMUSG00000040013	Fkbp6	1700008G22Rik|36kDa|AU017274|D5Ertd724e|FKBP-36|FKBP-6	FK506 binding protein 6	protein-coding	0.015000	0.417910	
mm_87079.1	chr10	29310892	29311092	+	1	NA	NA	NA	-2174	NM_001110195	52665	Mm.28930	NM_025855	ENSMUSG00000019883	Echdc1	1700028A24Rik|AI314462|AI930038|D10Ertd667e|MMCD	enoyl Coenzyme A hydratase domain containing 1	protein-coding	0.000000	0.442786	-34(GCCTATATAAGG,-,0.00)
mm_75979.1	chr8	72162855	72163055	-	1	NA	NA	NA	1755	NM_023126	17274	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	0.000000	0.507463	-35(GGCTTTAAATGC,-,0.00)
mm_171396.1	chr4	122473966	122474166	+	1	NA	NA	NA	-215193	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	0.020000	0.517413	-29(TCCTATATAAGC,-,0.00)
mm_66865.1	chr7	57165080	57165280	-	1	NA	NA	NA	221691	NM_008074	14407	Mm.434343	NM_008074	ENSMUSG00000055026	Gabrg3	B230362M20Rik|Gabrg-3	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3	protein-coding	0.000000	0.402985	
mm_15775.1	chr2	164333211	164333411	+	1	NA	NA	NA	546	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.035000	0.507463	
mm_98210.1	chr11	87797487	87797687	+	1	NA	NA	NA	3803	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.035000	0.592040	
mm_37131.1	chr4	116708234	116708434	-	1	NA	NA	NA	51	NM_025962	67096	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0.045000	0.497512	
mm_133699.1	chr16	92946711	92946911	+	1	NA	NA	NA	-120737	NM_001111022	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.010000	0.552239	
mm_82149.1	chr9	123774761	123774961	+	1	NA	NA	NA	7650	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.010000	0.358209	
mm_37895.1	chr4	132567397	132567597	-	1	NA	NA	NA	3430	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.025000	0.542289	
mm_150912.1	chr19	46063983	46064183	+	1	NA	NA	NA	7544	NM_001081214	226169	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	0.025000	0.567164	
mm_154775.1	chrX	12762169	12762369	+	1	NA	NA	NA	-9	NR_045852	552913	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	OTTMUSG00000017535	predicted gene 14634	ncRNA	0.130000	0.696517	
mm_123887.1	chr14	72709874	72710074	-	1	NA	NA	NA	29	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.155000	0.746269	
mm_71295.1	chr8	41218043	41218243	+	1	NA	NA	NA	-2987	NM_145594	234199	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding	0.035000	0.487562	
mm_69087.1	chr7	127016950	127017150	-	1	NA	NA	NA	302	NM_030240	67278	Mm.345385	NM_030240	ENSMUSG00000030680	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0.045000	0.606965	
mm_172171.1	chr6	44793147	44793347	+	1	NA	NA	NA	-266814	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.055000	0.457711	-61(AACTTTAAATGG,-,0.00)
mm_41982.1	chr5	107534650	107534850	+	1	NA	NA	NA	39	NM_175241	76421	Mm.67037	NM_175241	ENSMUSG00000089798	1700028K03Rik	-	RIKEN cDNA 1700028K03 gene	protein-coding	0.050000	0.631841	
mm_44221.1	chr5	4779837	4780037	-	1	NA	NA	NA	-21721	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.010000	0.363184	
mm_74474.1	chr8	4259079	4259279	-	1	NA	NA	NA	95	NM_183315	330695	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	0.090000	0.711443	
mm_163957.1	chr14	54893888	54894088	+	1	NA	NA	NA	-155	NM_019402	54196	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	0.050000	0.532338	
mm_162651.1	chr10	3366177	3366377	+	1	NA	NA	NA	127	NM_133485	76142	Mm.308126	NM_133485	ENSMUSG00000040653	Ppp1r14c	6330514J04Rik|KEPI	protein phosphatase 1, regulatory (inhibitor) subunit 14c	protein-coding	0.075000	0.572139	
mm_107908.1	chr12	70974620	70974820	+	1	NA	NA	NA	97	NM_011184	19167	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0.090000	0.646766	
mm_119526.1	chr14	47621325	47621525	+	1	NA	NA	NA	-27886	NM_001347527	16709	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	0.005000	0.452736	
mm_46000.1	chr5	90640549	90640749	-	1	NA	NA	NA	-122	NM_001310656	73246	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.035000	0.611940	
mm_20049.1	chr2	120244991	120245191	-	1	NA	NA	NA	244	NM_177845	329502	Mm.330505	NM_177845	ENSMUSG00000050211	Pla2g4e	2310026J01Rik|C230096D22|Pla2epsilon	phospholipase A2, group IVE	protein-coding	0.075000	0.557214	
mm_40359.1	chr5	48001575	48001775	+	1	NA	NA	NA	18520	NM_001291228	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding	0.005000	0.393035	
mm_9452.1	chr1	172602487	172602687	-	1	NA	NA	NA	-36	NM_001164725	677296	Mm.439612	NM_001164725	ENSMUSG00000070504	Fcrl6	ENSMUSG00000070504|FcRH6|mIFGP6|moFcRH6	Fc receptor-like 6	protein-coding	0.005000	0.497512	
mm_169585.1	chr15	25046317	25046517	+	1	NA	NA	NA	367347	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.015000	0.462687	
mm_121504.1	chr14	121930822	121931022	+	1	NA	NA	NA	-15148	NM_182806	110168	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	0.010000	0.472637	
mm_103507.1	chr11	76611044	76611244	-	1	NA	NA	NA	-33405	NM_198894	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.000000	0.398010	
mm_128734.1	chr15	64242594	64242794	-	1	NA	NA	NA	69979	NM_001276462	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.010000	0.442786	
mm_70575.1	chr8	13165800	13166000	+	1	NA	NA	NA	6739	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.020000	0.477612	
mm_80541.1	chr9	80681807	80682007	+	1	NA	NA	NA	-216469	NM_022016	63859	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	0.005000	0.422886	
mm_69164.1	chr7	127210228	127210428	-	1	NA	NA	NA	-1280	NM_016754	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.025000	0.507463	
mm_33378.1	chr4	129515794	129515994	+	1	NA	NA	NA	2313	NM_010807	17357	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0.010000	0.368159	-30(CTTTTAATGGCC,+,0.00)
mm_76196.1	chr8	82403143	82403343	-	1	NA	NA	NA	-657	NM_008357	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.020000	0.552239	
mm_84637.1	chr9	71163205	71163405	-	1	NA	NA	NA	-16	NM_022026	64008	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.010000	0.442786	
mm_20405.1	chr2	129299712	129299912	-	1	NA	NA	NA	2442	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.005000	0.398010	
mm_89174.1	chr10	86331556	86331756	+	1	NA	NA	NA	31244	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.005000	0.547264	
mm_47907.1	chr5	134945926	134946126	-	1	NA	NA	NA	908	NM_009903	12740	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	0.015000	0.537313	
mm_3754.1	chr1	156040791	156040991	+	1	NA	NA	NA	30	NM_022329	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.065000	0.626866	87(GTGTTTTAAAAC,-,0.00)
mm_21576.1	chr2	164237066	164237266	-	1	NA	NA	NA	1175	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.388060	
mm_171243.1	chr3	75372441	75372641	+	1	NA	NA	NA	-102463	NM_026460	67931	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.065000	0.651741	
mm_65886.1	chr7	29906012	29906212	-	1	NA	NA	NA	-8	NM_001037707	22689	Mm.86747	NM_011754	ENSMUSG00000062040	Zfp27	Zfp-27|mkr-4|mszf76	zinc finger protein 27	protein-coding	0.025000	0.512438	
mm_129622.1	chr15	80083297	80083497	-	1	NA	NA	NA	9	NM_013762	27367	Mm.290771	NM_013762	ENSMUSG00000060036	Rpl3	F2|J1	ribosomal protein L3	protein-coding	0.090000	0.572139	11(GGCTTTATATAG,-,0.00),13(CTTTATATAGCC,+,0.00)
mm_20031.1	chr2	119662696	119662896	-	1	NA	NA	NA	2	NM_027175	69702	Mm.5390	NM_027175	ENSMUSG00000027305	Ndufaf1	2410001M24Rik|CGI-65|CIA30	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 1	protein-coding	0.070000	0.587065	
mm_103288.1	chr11	72267053	72267253	-	1	NA	NA	NA	309	NR_045922	73366	Mm.396157	NR_045922	ENSMUSG00000086951	1700051A21Rik	-	RIKEN cDNA 1700051A21 gene	ncRNA	0.095000	0.626866	
mm_13062.1	chr2	91115323	91115523	+	1	NA	NA	NA	-2721	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.095000	0.741294	
mm_74116.1	chr8	123065410	123065610	+	1	NA	NA	NA	2	NM_153176	234847	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	spastic paraplegia 7 homolog (human)	protein-coding	0.135000	0.751244	
mm_112309.1	chr12	114835603	114835803	-	1	NA	NA	NA	-322009	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.412935	
mm_34248.1	chr4	141278348	141278548	+	1	NA	NA	NA	-22773	NM_010139	13836	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	0.010000	0.611940	
mm_91456.1	chr10	34044181	34044381	-	1	NA	NA	NA	32	NM_001081165	270711	Mm.303077	NM_001081165	ENSMUSG00000039508	Fam26d	4732454E20Rik|AI586164|Gm643	family with sequence similarity 26, member D	protein-coding	0.020000	0.452736	
mm_333.1	chr1	27883923	27884123	+	1	NA	NA	NA	896229	NM_001013750	210962	Mm.214178	NM_001013750	ENSMUSG00000048411	Gm597	-	predicted gene 597	protein-coding	0.000000	0.373134	
mm_113904.1	chr13	49247372	49247572	+	1	NA	NA	NA	691	NM_025491	66329	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.025000	0.517413	
mm_47782.1	chr5	131982379	131982579	-	1	NA	NA	NA	102210	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.005000	0.407960	
mm_144679.1	chr18	34758794	34758994	+	1	NA	NA	NA	-12	NM_175104	66306	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	0.025000	0.507463	69(GTTTATAAAAGC,-,0.00)
mm_39007.1	chr4	152027558	152027758	-	1	NA	NA	NA	13	NM_133879	100090	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3	zinc finger and BTB domain containing 48	protein-coding	0.105000	0.666667	
mm_115374.1	chr13	113071370	113071570	+	1	NA	NA	NA	-25082	NM_027127	69590	Mm.12715	NM_027127	ENSMUSG00000021760	Gpx8	2310016C16Rik|AU017063	glutathione peroxidase 8 (putative)	protein-coding	0.005000	0.338308	
mm_34038.1	chr4	138175781	138175981	+	1	NA	NA	NA	12672	NR_105825	102466907		NR_105825	ENSMUSG00000098513	Mir6399	Gm27667|mir-6399|mmu-mir-6399	microRNA 6399	ncRNA	0.025000	0.507463	
mm_15171.1	chr2	154014837	154015037	+	1	NA	NA	NA	6661	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.005000	0.467662	
mm_137532.1	chr17	27555541	27555741	+	1	NA	NA	NA	-933	NM_001166536	15361	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0.090000	0.681592	
mm_57948.1	chr6	134898094	134898294	-	1	NA	NA	NA	233	NR_029441	72813	Mm.409034	NR_029441	ENSMUSG00000100876	2810454H06Rik	-	RIKEN cDNA 2810454H06 gene	ncRNA	0.040000	0.507463	
mm_6023.1	chr1	59151583	59151783	-	1	NA	NA	NA	9953	NM_145143	227157	Mm.474049	NM_145143	ENSMUSG00000079550	Mpp4	Dlg6	membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)	protein-coding	0.005000	0.472637	
mm_60788.1	chr7	45566936	45567136	+	1	NA	NA	NA	-3117	NM_009737	12036	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.015000	0.562189	77(TCCTATAAAAAC,-,0.00)
mm_39308.1	chr5	7972386	7972586	+	1	NA	NA	NA	12014	NM_054098	117167	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0.005000	0.512438	
mm_152077.1	chr19	6853552	6853752	-	1	NA	NA	NA	4559	NM_001081291	78317	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.015000	0.597015	
mm_20175.1	chr2	122467637	122467837	-	1	NA	NA	NA	60	NR_027919	81913	Mm.122640	NR_027919		Bambi-ps1	-	BMP and activin membrane-bound inhibitor, pseudogene (Xenopus laevis)	pseudo	0.080000	0.641791	
mm_41478.1	chr5	91962793	91962993	+	1	NA	NA	NA	11	NR_028429	381650	Mm.159453	NR_028429	ENSMUSG00000102644	Thap6	4930534K21Rik|AI448650	THAP domain containing 6	pseudo	0.070000	0.577114	
mm_44821.1	chr5	33657552	33657752	-	1	NA	NA	NA	180	NM_026698	68366	Mm.491151	NM_026698	ENSMUSG00000019295	Tmem129	0610039G24Rik|2410015J15Rik|AA409575	transmembrane protein 129	protein-coding	0.080000	0.626866	
mm_21856.1	chr2	165884107	165884307	-	1	NA	NA	NA	631	NM_001252584	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.010000	0.552239	
mm_152964.1	chr19	29367180	29367380	-	1	NA	NA	NA	-158	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.035000	0.477612	
mm_172852.1	chr9	37453615	37453815	+	1	NA	NA	NA	-20540	NM_001164767	19649	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0.015000	0.492537	
mm_147998.1	chr18	67677696	67677896	-	1	NA	NA	NA	36197	NM_134138	107047	Mm.150701	NM_134138	ENSMUSG00000024537	Psmg2	1700017I17Rik|AW545363|Clast3|Tnfsf5ip1	proteasome (prosome, macropain) assembly chaperone 2	protein-coding	0.010000	0.368159	
mm_56796.1	chr6	116647781	116647981	-	1	NA	NA	NA	-1834	NR_106010	102466793		NR_106010	ENSMUSG00000098334	Mir7043	Gm27776|mmu-mir-7043	microRNA 7043	ncRNA	0.035000	0.636816	
mm_130365.1	chr15	97791295	97791495	-	1	NA	NA	NA	7030	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.020000	0.572139	
mm_2504.1	chr1	106201764	106201964	+	1	NA	NA	NA	29995	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.000000	0.288557	-46(GGCTTTAAAAAG,-,0.00)
mm_99279.1	chr11	101279030	101279230	+	1	NA	NA	NA	-73	NM_026562	68107	Mm.262369	NM_026562	ENSMUSG00000078653	Cntd1	1700051C09Rik|4921513J16Rik|5430417M23Rik|Cntd	cyclin N-terminal domain containing 1	protein-coding	0.045000	0.522388	
mm_11684.1	chr2	35582740	35582940	+	1	NA	NA	NA	0	NM_001290637	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.120000	0.791045	
mm_163777.1	chr13	120043936	120044136	-	1	NA	NA	NA	8168	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.000000	0.407960	
mm_126273.1	chr15	79141277	79141477	+	1	NA	NA	NA	52	NM_027231	69833	Mm.279861	NM_027231	ENSMUSG00000033020	Polr2f	1810060D16Rik|RPB6	polymerase (RNA) II (DNA directed) polypeptide F	protein-coding	0.125000	0.666667	
mm_18673.1	chr2	71055409	71055609	-	1	NA	NA	NA	97	NM_145524	228019	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.055000	0.641791	
mm_145550.1	chr18	60809898	60810098	+	1	NA	NA	NA	-2078	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.020000	0.552239	
mm_132157.1	chr16	32179682	32179882	+	1	NA	NA	NA	-18	NM_001033539	328660	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.010000	0.422886	
mm_72297.1	chr8	75448656	75448856	+	1	NA	NA	NA	62	NM_001164235	71831	Mm.443238	NM_027944	ENSMUSG00000031620	1700007B14Rik	-	RIKEN cDNA 1700007B14 gene	protein-coding	0.020000	0.557214	
mm_135531.1	chr16	49768633	49768833	-	1	NA	NA	NA	69439	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.000000	0.492537	-98(GGCCTTTAAAAC,-,0.00),-97(GCCTTTAAAACC,+,0.00),-96(CCTTTAAAACCT,+,0.00)
mm_134362.1	chr16	16863891	16864091	-	1	NA	NA	NA	-6	NM_001190325	16136	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	0.005000	0.542289	
mm_120574.1	chr14	69171886	69172086	+	1	NA	NA	NA	-143	NR_045931	73554	Mm.320005	NR_045931	ENSMUSG00000092499	1700092C10Rik	-	RIKEN cDNA 1700092C10 gene	ncRNA	0.035000	0.537313	
mm_130203.1	chr15	95527896	95528096	-	1	NA	NA	NA	256	NM_001289653	54003	Mm.3959	NM_016743	ENSMUSG00000022454	Nell2	A330108N19Rik|R75516|mel91	NEL-like 2	protein-coding	0.135000	0.721393	
mm_45377.1	chr5	66080890	66081090	-	1	NA	NA	NA	17189	NM_139065	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.030000	0.477612	
mm_100563.1	chr11	120730401	120730601	+	1	NA	NA	NA	1520	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.015000	0.537313	
mm_111043.1	chr12	79493536	79493736	-	1	NA	NA	NA	196285	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.010000	0.482587	-31(GCATATATACTC,+,0.00)
mm_104938.1	chr11	100111932	100112132	-	1	NA	NA	NA	-6406	NM_001174099	16673	Mm.306829	NM_008472	ENSMUSG00000020916	Krt36	HRa-1|K36|Krt1-22|Krt1-5|MHRa-1	keratin 36	protein-coding	0.015000	0.542289	-48(GACCATAAAAGC,-,0.00)
mm_90822.1	chr10	7920051	7920251	-	1	NA	NA	NA	35972	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.010000	0.437811	
mm_92478.1	chr10	78244539	78244739	-	1	NA	NA	NA	3	NM_001081055	216131	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1	trafficking protein particle complex 10	protein-coding	0.175000	0.796020	
mm_30064.1	chr3	137878043	137878243	-	1	NA	NA	NA	10468	NM_001033155	70604	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	0.000000	0.393035	
mm_18142.1	chr2	45057414	45057614	-	1	NA	NA	NA	-34337	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.000000	0.313433	
mm_3411.1	chr1	144249287	144249487	+	1	NA	NA	NA	-283	NM_015811	50778	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.000000	0.388060	
mm_59623.1	chr7	28154533	28154733	+	1	NA	NA	NA	-15115	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.020000	0.527363	
mm_4653.1	chr1	180342221	180342421	+	1	NA	NA	NA	-11772	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.010000	0.472637	
mm_70173.1	chr7	143628304	143628504	-	1	NA	NA	NA	-559	NM_175649	244237	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	0.005000	0.432836	
mm_77916.1	chr9	7350525	7350725	+	1	NA	NA	NA	3251	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.353234	
mm_2677.1	chr1	127299885	127300085	+	1	NA	NA	NA	94999	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.005000	0.507463	
mm_78978.1	chr9	45371547	45371747	+	1	NA	NA	NA	1462	NM_022004	59095	Mm.208287	NM_022004	ENSMUSG00000066705	Fxyd6	0610030I18Rik|Php	FXYD domain-containing ion transport regulator 6	protein-coding	0.010000	0.502488	-56(TGCTTTTTAAAG,-,0.00),-55(GCTTTTTAAAGG,-,0.00),-54(CTTTTTAAAGGA,+,0.00)
mm_100078.1	chr11	115463676	115463876	+	1	NA	NA	NA	1303	NM_001080934	217316	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	0.025000	0.512438	
mm_103841.1	chr11	83040401	83040601	-	1	NA	NA	NA	32	NR_073524	237887	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	pseudo	0.005000	0.482587	
mm_158927.1	chr1	60234819	60235019	+	1	NA	NA	NA	54320	NM_173444	269198	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	0.005000	0.402985	
mm_156692.1	chrX	159459080	159459280	+	1	NA	NA	NA	55	NM_001313753	78283	Mm.160079	NM_001081124	ENSMUSG00000041020	Map7d2	1600028E09Rik|2900002G04Rik|5330432J06Rik|C030036K04Rik|Mtap7d2	MAP7 domain containing 2	protein-coding	0.000000	0.547264	
mm_129319.1	chr15	77763737	77763937	-	1	NA	NA	NA	-8608	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.025000	0.557214	
mm_65869.1	chr7	29505638	29505838	-	1	NA	NA	NA	-278	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.030000	0.606965	
mm_17957.1	chr2	37367640	37367840	-	1	NA	NA	NA	-8408	NM_026176	67466	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	0.015000	0.268657	
mm_152017.1	chr19	6015075	6015275	-	1	NA	NA	NA	72	NM_007600	12333	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	0.030000	0.676617	
mm_158490.1	chrX	142327940	142328140	-	1	NA	NA	NA	-21842	NM_021487	66240	Mm.58507	NM_021487	ENSMUSG00000090122	Kcne1l	1500015C14Rik|Kcne5|Mink	potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	protein-coding	0.010000	0.402985	
mm_23023.1	chr3	34638232	34638432	+	1	NA	NA	NA	-132	NR_035433	100316679		NR_035433	ENSMUSG00000104797	Mir1897	Mirn1897|mmu-mir-1897	microRNA 1897	ncRNA	0.025000	0.527363	
mm_14881.1	chr2	148835067	148835267	+	1	NA	NA	NA	20	NM_009979	13013	Mm.21005	NM_009979	ENSMUSG00000027445	Cst9	M12|cresp|testatin	cystatin 9	protein-coding	0.000000	0.502488	
mm_36100.1	chr4	58553169	58553369	-	1	NA	NA	NA	24	NM_172989	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.140000	0.756219	
mm_107531.1	chr12	40529524	40529724	+	1	NA	NA	NA	83571	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.005000	0.412935	
mm_85454.1	chr9	105144913	105145113	-	1	NA	NA	NA	69	NM_028562	73532	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	0.020000	0.532338	
mm_121958.1	chr14	24491654	24491854	-	1	NA	NA	NA	1073	NM_011297	20088	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	0.015000	0.442786	
mm_53979.1	chr6	6861549	6861749	-	1	NA	NA	NA	-1685	NM_010057	13396	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding	0.030000	0.492537	
mm_34667.1	chr4	150914493	150914693	+	1	NA	NA	NA	-4672	NM_020569	57320	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.115000	0.661692	
mm_136645.1	chr17	5841162	5841362	+	1	NA	NA	NA	-118	NM_025664	66616	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0.170000	0.840796	
mm_102218.1	chr11	54909630	54909830	-	1	NA	NA	NA	6876	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.015000	0.567164	
mm_96436.1	chr11	67301673	67301873	+	1	NA	NA	NA	24649	NM_177369	17885	Mm.340163	NM_177369	ENSMUSG00000055775	Myh8	4832426G23Rik|AI327267|MHCp|MyHC-pn|Myhs-p|Myhsp	myosin, heavy polypeptide 8, skeletal muscle, perinatal	protein-coding	0.040000	0.562189	
mm_47922.1	chr5	135008749	135008949	-	1	NA	NA	NA	-303	NM_001190437	68758	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.060000	0.547264	-12(TCTTTTAAGAGC,+,0.00),-11(CTTTTAAGAGCT,+,0.00)
mm_150161.1	chr19	32387459	32387659	+	1	NA	NA	NA	895	NM_144792	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.075000	0.646766	
mm_128313.1	chr15	37959985	37960185	-	1	NA	NA	NA	970	NM_199476	382985	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.000000	0.323383	60(GGCCATAAAAGT,-,0.00)
mm_47340.1	chr5	122502173	122502373	-	1	NA	NA	NA	-48	NR_027838	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.180000	0.791045	
mm_36450.1	chr4	82498427	82498627	-	1	NA	NA	NA	7252	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.045000	0.552239	
mm_76766.1	chr8	95807295	95807495	-	1	NA	NA	NA	67	NM_178078	234594	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	0.100000	0.656716	
mm_11460.1	chr2	32236487	32236687	+	1	NA	NA	NA	-96	NM_145145	99011	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0.130000	0.646766	
mm_15935.1	chr2	165601713	165601913	+	1	NA	NA	NA	6785	NM_001271963	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	0.020000	0.527363	
mm_154427.1	chrM	370	570	-	1	NA	NA	NA	NA	NA									0.010000	0.293532	
mm_1007.1	chr1	58725970	58726170	+	1	NA	NA	NA	-4482	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.015000	0.427861	
mm_40581.1	chr5	64103632	64103832	+	1	NA	NA	NA	10782	NM_025700	66681	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	0.025000	0.547264	
mm_108675.1	chr12	86678641	86678841	+	1	NA	NA	NA	41	NM_177354	238328	Mm.216101	NM_177354	ENSMUSG00000021256	Vash1	AI834978|D930046M13Rik|G630009D10Rik	vasohibin 1	protein-coding	0.150000	0.746269	-76(GGCCCTTTAAGG,-,0.00),-75(GCCCTTTAAGGG,-,0.00),-74(CCCTTTAAGGGG,+,0.00),-74(CCCTTTAAGGGG,-,0.00),-73(CCTTTAAGGGGG,+,0.00)
mm_147563.1	chr18	54990002	54990202	-	1	NA	NA	NA	78	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.015000	0.502488	52(TTTTTTAAGGAG,+,0.00)
mm_134358.1	chr16	16829160	16829360	-	1	NA	NA	NA	103	NM_015773	50525	Mm.31701	NM_015773	ENSMUSG00000022783	Spag6l	PF16|Spag6|Spag6l1	sperm associated antigen 6-like	protein-coding	0.055000	0.626866	
mm_74847.1	chr8	24585262	24585462	-	1	NA	NA	NA	-9029	NM_145949	209176	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0.000000	0.442786	
mm_15911.1	chr2	165059827	165060027	+	1	NA	NA	NA	4291	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.030000	0.452736	
mm_104886.1	chr11	99556752	99556952	-	1	NA	NA	NA	1	NM_025720	66708	Mm.46389	NM_025720	ENSMUSG00000069721	Krtap3-2	2310020D06Rik|4733401L16Rik|KAP3.2|KRTAP3.2	keratin associated protein 3-2	protein-coding	0.010000	0.517413	
mm_113975.1	chr13	51709870	51710070	+	1	NA	NA	NA	58262	NM_029279	75420	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.015000	0.467662	
mm_108527.1	chr12	84126144	84126344	+	1	NA	NA	NA	11916	NM_001346528	105000	Mm.101525	NM_028821	ENSMUSG00000042523	Dnal1	1700010H15Rik|AW121714|Dnalc1|E330027P08Rik	dynein, axonemal, light chain 1	protein-coding	0.035000	0.527363	
mm_107956.1	chr12	72442260	72442460	+	1	NA	NA	NA	111	NM_001142729	78257	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	0.040000	0.626866	
mm_56360.1	chr6	93815708	93815908	-	1	NA	NA	NA	97155	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.020000	0.512438	
mm_80354.1	chr9	75185965	75186165	+	1	NA	NA	NA	-45949	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.055000	0.577114	
mm_29950.1	chr3	133091649	133091849	-	1	NA	NA	NA	-9	NM_026231	67553	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0.085000	0.646766	
mm_82422.1	chr9	14903774	14903974	-	1	NA	NA	NA	77	NM_176807	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.005000	0.502488	
mm_67798.1	chr7	98085349	98085549	-	1	NA	NA	NA	23799	NM_001256082	17921	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.035000	0.597015	
mm_156144.1	chrX	129756989	129757189	+	1	NA	NA	NA	7347	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.000000	0.388060	
mm_128775.1	chr15	66702575	66702775	-	1	NA	NA	NA	31905	NM_009375	21819	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	0.015000	0.452736	
mm_154020.1	chr19	53318482	53318682	-	1	NA	NA	NA	8076	NM_001008542	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.025000	0.532338	
mm_74138.1	chr8	123224754	123224954	+	1	NA	NA	NA	13	NM_194444	234854	Mm.190984	NM_194444	ENSMUSG00000033862	Cdk10	BC017131	cyclin-dependent kinase 10	protein-coding	0.095000	0.611940	
mm_29567.1	chr3	116968466	116968666	-	1	NA	NA	NA	299	NR_040596	74654	Mm.410820	NR_040596	ENSMUSG00000080907	4930455H04Rik	-	RIKEN cDNA 4930455H04 gene	ncRNA	0.020000	0.492537	
mm_16317.1	chr2	174304259	174304459	+	1	NA	NA	NA	6500	NM_001310085	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.000000	0.412935	
mm_35734.1	chr4	45012206	45012406	-	1	NA	NA	NA	106	NM_001163284	230119	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0.105000	0.721393	
mm_79327.1	chr9	53321637	53321837	+	1	NA	NA	NA	20067	NM_176846	320051	Mm.277540	NM_176846	ENSMUSG00000034584	Exph5	AC079869.22gm5|B130009M24Rik|E030050P12|Kiaa0624|Slac2b|slac2-b	exophilin 5	protein-coding	0.005000	0.432836	
mm_84877.1	chr9	79718647	79718847	-	1	NA	NA	NA	-25	NM_001290308	12816	Mm.3819	NM_007730	ENSMUSG00000032332	Col12a1	-	collagen, type XII, alpha 1	protein-coding	0.090000	0.582090	
mm_65108.1	chr7	19309646	19309846	-	1	NA	NA	NA	299	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.095000	0.631841	
mm_158754.1	chrX	166440593	166440793	-	1	NA	NA	NA	11	NM_177429	237222	Mm.247480	NM_177429	ENSMUSG00000040586	Ofd1	Cxorf5|DXGgc7e|ORF2	oral-facial-digital syndrome 1 gene homolog (human)	protein-coding	0.125000	0.716418	
mm_119891.1	chr14	54937644	54937844	+	1	NA	NA	NA	1247	NM_029390	67272	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	0.005000	0.542289	
mm_165558.1	chr3	14886162	14886362	+	1	NA	NA	NA	-164	NM_009801	12349	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0.130000	0.781095	
mm_71945.1	chr8	70376211	70376411	+	1	NA	NA	NA	2763	NM_016685	12845	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	0.090000	0.671642	
mm_148656.1	chr19	5510645	5510845	+	1	NA	NA	NA	-256	NM_001024560	225861	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0.090000	0.681592	
mm_116767.1	chr13	52735502	52735702	-	1	NA	NA	NA	21603	NR_027893	105404	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0.015000	0.492537	
mm_76185.1	chr8	82402389	82402589	-	1	NA	NA	NA	97	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.015000	0.542289	
mm_57136.1	chr6	122608442	122608642	-	1	NA	NA	NA	1545	NM_008108	14562	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0.005000	0.472637	
mm_114741.1	chr13	83739087	83739287	+	1	NA	NA	NA	373	NR_029545	723967		NR_029545	ENSMUSG00000065424	Mir9-2	Mirn9-2|mir-9-2|mmu-mir-9-2	microRNA 9-2	ncRNA	0.020000	0.343284	
mm_61604.1	chr7	80027508	80027708	+	1	NA	NA	NA	1380	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.035000	0.492537	7(CCTTTTAAGATG,+,0.00),19(ACTTTTATGGTC,+,0.00)
mm_59814.1	chr7	29171316	29171516	+	1	NA	NA	NA	1026	NM_182696	243897	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	0.060000	0.726368	
mm_142529.1	chr17	46438358	46438558	-	1	NA	NA	NA	19	NM_144856	108114	Mm.387538	NM_144856	ENSMUSG00000067144	Slc22a7	NLT|OAT2	solute carrier family 22 (organic anion transporter), member 7	protein-coding	0.010000	0.582090	
mm_139720.1	chr17	57467291	57467491	+	1	NA	NA	NA	77923	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.005000	0.353234	
mm_2013.1	chr1	87127634	87127834	+	1	NA	NA	NA	2726	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.055000	0.646766	
mm_1760.1	chr1	75545976	75546176	+	1	NA	NA	NA	-190	NM_009208	20536	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	0.020000	0.552239	
mm_30015.1	chr3	135665095	135665295	-	1	NA	NA	NA	26352	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.000000	0.393035	
mm_146782.1	chr18	20101825	20102025	-	1	NA	NA	NA	12848	NM_001291804	13505	Mm.33740	NM_013504	ENSMUSG00000044322	Dsc1	1110020A10Rik|AI507491	desmocollin 1	protein-coding	0.010000	0.432836	
mm_106313.1	chr11	118302524	118302724	-	1	NA	NA	NA	-12380	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.020000	0.502488	
mm_108112.1	chr12	75308531	75308731	+	1	NA	NA	NA	318	NM_023275	80837	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	0.025000	0.582090	
mm_164990.1	chr19	11447467	11447667	+	1	NA	NA	NA	4009	NM_021718	60361	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	0.000000	0.447761	
mm_126253.1	chr15	79030809	79031009	+	1	NA	NA	NA	35	NM_001161712	26912	Mm.237085	NM_013847	ENSMUSG00000006378	Gcat	AI526977|Kbl	glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)	protein-coding	0.070000	0.631841	-87(CCTTTTAAAGTG,+,0.00)
mm_27283.1	chr3	41494848	41495048	-	1	NA	NA	NA	-1749	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.000000	0.487562	15(TCTTATATAACC,+,0.00)
mm_148885.1	chr19	6857530	6857730	+	1	NA	NA	NA	581	NM_001081291	78317	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.015000	0.582090	
mm_142169.1	chr17	36168439	36168639	-	1	NA	NA	NA	-2	NM_001081032	667977	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0.060000	0.611940	
mm_112404.1	chr13	3538525	3538725	+	1	NA	NA	NA	550	NM_008112	14569	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0.045000	0.587065	
mm_33668.1	chr4	133185534	133185734	+	1	NA	NA	NA	-10021	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.030000	0.502488	-88(GCTCAAATAGCC,+,0.00)
mm_48831.1	chr5	149184124	149184324	-	1	NA	NA	NA	-336	NM_001115153	231915	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	0.115000	0.656716	
mm_137755.1	chr17	29464952	29465152	+	1	NA	NA	NA	-25993	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.020000	0.452736	
mm_42210.1	chr5	112793161	112793361	+	1	NA	NA	NA	-31	NR_040675	67360	Mm.59218	NR_040675	ENSMUSG00000098230	1700095B10Rik	-	RIKEN cDNA 1700095B10 gene	ncRNA	0.010000	0.517413	
mm_135256.1	chr16	37833829	37834029	-	1	NA	NA	NA	-34471	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.025000	0.477612	80(AGATATTAAAGG,-,0.00)
mm_112190.1	chr12	113422640	113422840	-	1	NA	NA	NA	-66825	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.015000	0.537313	
mm_115483.1	chr13	3601388	3601588	-	1	NA	NA	NA	9620	NM_134063	105203	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	0.010000	0.333333	-89(TCTTTTATACCA,+,0.00)
mm_122124.1	chr14	31128842	31129042	-	1	NA	NA	NA	-12	NM_001308464	66487	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0.085000	0.611940	
mm_24584.1	chr3	93444774	93444974	+	1	NA	NA	NA	2544	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.075000	0.636816	
mm_173026.1	chrX	104348356	104348556	-	1	NA	NA	NA	65390	NM_009592	11306	Mm.426128	NM_009592	ENSMUSG00000031333	Abcb7	AA517758|AU019072|Abc7	ATP-binding cassette, sub-family B (MDR/TAP), member 7	protein-coding	0.075000	0.547264	
mm_75923.1	chr8	71498064	71498264	-	1	NA	NA	NA	10061	NM_032544	70359	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	0.025000	0.587065	
mm_45819.1	chr5	87692565	87692765	-	1	NA	NA	NA	6760	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.000000	0.243781	
mm_21757.1	chr2	164839678	164839878	-	1	NA	NA	NA	6005	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.030000	0.621891	
mm_117876.1	chr13	98926267	98926467	-	1	NA	NA	NA	17	NM_178716	238799	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.140000	0.736318	
mm_71129.1	chr8	36549261	36549461	+	1	NA	NA	NA	60170	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding	0.050000	0.606965	
mm_120211.1	chr14	62497467	62497667	+	1	NA	NA	NA	-41278	NM_172810	239134	Mm.236557	NM_172810	ENSMUSG00000021933	Gucy1b2	B930025B03|GC-SB2	guanylate cyclase 1, soluble, beta 2	protein-coding	0.020000	0.462687	
mm_105989.1	chr11	115627676	115627876	-	1	NA	NA	NA	519	NM_001252394	67283	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.055000	0.621891	
mm_163073.1	chr11	67294415	67294615	+	1	NA	NA	NA	17391	NM_177369	17885	Mm.340163	NM_177369	ENSMUSG00000055775	Myh8	4832426G23Rik|AI327267|MHCp|MyHC-pn|Myhs-p|Myhsp	myosin, heavy polypeptide 8, skeletal muscle, perinatal	protein-coding	0.020000	0.507463	
mm_1895.1	chr1	85709247	85709447	+	1	NA	NA	NA	27259	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.005000	0.532338	
mm_150926.1	chr19	46227728	46227928	+	1	NA	NA	NA	75270	NM_178930	107338	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	0.005000	0.333333	68(CCTTTTAAAAAT,+,0.00)
mm_13489.1	chr2	106693317	106693517	+	1	NA	NA	NA	-42	NM_001143683	77015	Mm.45628	NM_029837	ENSMUSG00000016386	Mpped2	239Fb|2700082O15Rik|AV354767|AW060960	metallophosphoesterase domain containing 2	protein-coding	0.090000	0.721393	
mm_153212.1	chr19	34747060	34747260	-	1	NA	NA	NA	-49	NM_172838	240638	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0.125000	0.766169	
mm_24349.1	chr3	89911300	89911500	+	1	NA	NA	NA	1796	NM_001310676	16194	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.005000	0.532338	
mm_57429.1	chr6	124914093	124914293	-	1	NA	NA	NA	-2488	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.030000	0.601990	
mm_65586.1	chr7	27310568	27310768	-	1	NA	NA	NA	22980	NM_001113549	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.050000	0.636816	
mm_24297.1	chr3	89339545	89339745	+	1	NA	NA	NA	-1617	NM_007910	13639	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	0.025000	0.557214	
mm_13532.1	chr2	110600411	110600611	+	1	NA	NA	NA	3212	NM_001177624	241612	Mm.277148	NM_001003915	ENSMUSG00000041644	Slc5a12	AI315119|D630015G19|SMCT2	solute carrier family 5 (sodium/glucose cotransporter), member 12	protein-coding	0.010000	0.422886	
mm_131776.1	chr16	22894748	22894948	+	1	NA	NA	NA	-462	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.020000	0.462687	
mm_62263.1	chr7	99465927	99466127	+	1	NA	NA	NA	23	NM_028145	72184	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0.025000	0.606965	
mm_67370.1	chr7	79841042	79841242	-	1	NA	NA	NA	1210	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.010000	0.517413	
mm_20730.1	chr2	136891288	136891488	-	1	NA	NA	NA	18	NM_021527	59030	Mm.272570	NM_021527	ENSMUSG00000027274	Mkks	1300013E18Rik|AI463362|AI957237|Bbs6	McKusick-Kaufman syndrome	protein-coding	0.040000	0.492537	
mm_171916.1	chr5	5782103	5782303	-	1	NA	NA	NA	-32886	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.010000	0.527363	
mm_48311.1	chr5	138708444	138708644	-	1	NA	NA	NA	-46537	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.000000	0.462687	
mm_8168.1	chr1	136960444	136960644	-	1	NA	NA	NA	-96	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	0.010000	0.442786	
mm_70372.1	chr8	9977729	9977929	+	1	NA	NA	NA	112	NM_026868	68904	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	0.115000	0.706468	
mm_121525.1	chr14	122150741	122150941	+	1	NA	NA	NA	-30853	NM_029556	69634	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	0.025000	0.452736	
mm_132647.1	chr16	41290699	41290899	+	1	NA	NA	NA	-242027	NM_001347236	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.000000	0.273632	
mm_62399.1	chr7	101108647	101108847	+	1	NA	NA	NA	-28	NM_001146010	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.135000	0.805970	
mm_58760.1	chr7	13623892	13624092	+	1	NA	NA	NA	25	NM_001184980	434264	Mm.359414	NM_001184980	ENSMUSG00000078799	Sult2a5	EG434264|Gm15438|OTTMUSG00000021844	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 5	protein-coding	0.000000	0.343284	
mm_5215.1	chr1	13660545	13660745	-	1	NA	NA	NA	-136	NM_145381	212442	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	0.100000	0.671642	
mm_131318.1	chr16	11984030	11984230	+	1	NA	NA	NA	17	NM_001174086	72555	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	0.070000	0.656716	
mm_103822.1	chr11	83005061	83005261	-	1	NA	NA	NA	-13331	NM_172796	237886	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.010000	0.393035	
mm_131284.1	chr16	11144007	11144207	+	1	NA	NA	NA	-9575	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.175000	0.786070	
mm_68268.1	chr7	105595513	105595713	-	1	NA	NA	NA	4503	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.030000	0.512438	
mm_66064.1	chr7	30820996	30821196	-	1	NA	NA	NA	43	NM_001168511	233079	Mm.97338	NM_146187	ENSMUSG00000051314	Ffar2	GPCR43|Gpr43	free fatty acid receptor 2	protein-coding	0.010000	0.537313	
mm_39885.1	chr5	31116485	31116685	+	1	NA	NA	NA	-27	NM_021447	58522	Mm.143796	NM_021447	ENSMUSG00000062077	Trim54	4930486E09Rik|4930566I02Rik|MURF|MURF-3|MuRF3|Rnf30	tripartite motif-containing 54	protein-coding	0.010000	0.527363	
mm_53189.1	chr6	125482437	125482637	+	1	NA	NA	NA	12218	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.015000	0.502488	31(GTCTCTAAGAGC,-,0.00)
mm_134601.1	chr16	20621288	20621488	-	1	NA	NA	NA	-110	NM_028420	73047	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	0.165000	0.800995	
mm_78492.1	chr9	32705032	32705232	+	1	NA	NA	NA	9090	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.000000	0.402985	
mm_120220.1	chr14	62837603	62837803	+	1	NA	NA	NA	13	NM_175546	268752	Mm.1960	NM_175546	ENSMUSG00000014547	Wdfy2	5830485M08|B130024L21Rik|ProF|ZFYVE22	WD repeat and FYVE domain containing 2	protein-coding	0.085000	0.696517	
mm_4098.1	chr1	167350068	167350268	+	1	NA	NA	NA	177	NM_019993	56752	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.070000	0.641791	
mm_41591.1	chr5	93268455	93268655	+	1	NA	NA	NA	982	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0.065000	0.611940	
mm_77975.1	chr9	7869664	7869864	+	1	NA	NA	NA	3406	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.005000	0.283582	
mm_149723.1	chr19	21778284	21778484	+	1	NA	NA	NA	44	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.125000	0.741294	
mm_95690.1	chr11	54304154	54304354	+	1	NA	NA	NA	50	NM_001033597	216739	Mm.267478	NM_144823	ENSMUSG00000020333	Acsl6	A330035H04Rik|AW050338|Facl6|LACS|Lacsl|mKIAA0837	acyl-CoA synthetase long-chain family member 6	protein-coding	0.110000	0.721393	
mm_14194.1	chr2	127133855	127134055	+	1	NA	NA	NA	-1	NM_144818	215387	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|HCAP-H|mKIAA0074	non-SMC condensin I complex, subunit H	protein-coding	0.110000	0.611940	
mm_142632.1	chr17	47414569	47414769	-	1	NA	NA	NA	42	NM_001172091	75462	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.010000	0.452736	-16(CTCTCTAAATGC,-,0.00)
mm_83105.1	chr9	40345148	40345348	-	1	NA	NA	NA	11776	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.010000	0.552239	
mm_148870.1	chr19	6497581	6497781	+	1	NA	NA	NA	45389	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.040000	0.656716	
mm_82328.1	chr9	8752157	8752357	-	1	NA	NA	NA	-11269	NR_110513	102634431	Mm.387913	NR_110513	ENSMUSG00000111602	Gm32014	-	predicted gene, 32014	ncRNA	0.005000	0.427861	-35(GGGCATAAAAGG,-,0.00)
mm_130660.1	chr15	100644825	100645025	-	1	NA	NA	NA	4304	NR_105926	102465580		NR_105926	ENSMUSG00000098527	Mir6961	Gm27367|mmu-mir-6961	microRNA 6961	ncRNA	0.035000	0.636816	
mm_102055.1	chr11	52231791	52231991	-	1	NA	NA	NA	-104	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.100000	0.691542	
mm_92222.1	chr10	68278624	68278824	-	1	NA	NA	NA	2	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.050000	0.587065	
mm_9745.1	chr1	180403646	180403846	-	1	NA	NA	NA	-73197	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.040000	0.552239	
mm_76014.1	chr8	73207612	73207812	-	1	NA	NA	NA	145828	NM_001317391	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.000000	0.308458	
mm_10629.1	chr2	19743491	19743691	+	1	NA	NA	NA	85529	NM_027715	71198	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	0.020000	0.482587	
mm_115477.1	chr13	119488723	119488923	+	1	NA	NA	NA	-37	NM_001177666	633640	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	0.070000	0.527363	
mm_140487.1	chr17	3157782	3157982	-	1	NA	NA	NA	42910	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.030000	0.527363	
mm_100043.1	chr11	115133945	115134145	+	1	NA	NA	NA	-53	NM_145634	246746	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.020000	0.507463	-33(GCATATAAAGCA,+,0.00)
mm_107880.1	chr12	69986732	69986932	+	1	NA	NA	NA	170	NM_022028	64010	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0.175000	0.776119	
mm_71605.1	chr8	56183201	56183401	+	1	NA	NA	NA	-111251	NM_008278	15446	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.000000	0.348259	
mm_145916.1	chr18	66548794	66548994	+	1	NA	NA	NA	44716	NR_040528	100503565	Mm.98256	NR_040528		Gm9926	ENSMUSG00000053891	predicted gene 9926	ncRNA	0.040000	0.512438	
mm_98289.1	chr11	89066235	89066435	+	1	NA	NA	NA	5584	NR_110336	414094	Mm.124287	NM_001001497		Dgkeos	A930013B10Rik	diacylglycerol kinase, epsilon, opposite strand	ncRNA	0.010000	0.492537	
mm_159968.1	chr6	97060099	97060299	-	1	NA	NA	NA	212	NM_177233	320701	Mm.131700	NM_177233	ENSMUSG00000046500	Fam19a4	C130034I18Rik|Fam19a4 Tafa-4|Tafa-4	family with sequence similarity 19, member A4	protein-coding	0.055000	0.567164	
mm_128142.1	chr15	31530744	31530944	-	1	NA	NA	NA	193	NM_172606	223455	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0.160000	0.791045	
mm_80961.1	chr9	103085765	103085965	+	1	NA	NA	NA	-26209	NM_173781	270192	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.005000	0.522388	
mm_21120.1	chr2	153549825	153550025	-	1	NA	NA	NA	-19954	NM_001134300	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.015000	0.577114	-95(TCCCTTTAAAGA,-,0.00),-94(CCCTTTAAAGAG,+,0.00),-94(CCCTTTAAAGAG,-,0.00),-93(CCTTTAAAGAGG,+,0.00)
mm_402.1	chr1	34171031	34171231	+	1	NA	NA	NA	10801	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.025000	0.407960	
mm_127678.1	chr15	102921058	102921258	+	1	NA	NA	NA	27	NM_010464	15422	Mm.207062	NM_010464	ENSMUSG00000001655	Hoxc13	-	homeobox C13	protein-coding	0.050000	0.592040	1(GTTTTTAAAAAG,-,0.00)
mm_99428.1	chr11	102399736	102399936	+	1	NA	NA	NA	5151	NR_105895	102465561		NR_105895	ENSMUSG00000098774	Mir6930	Gm27436|mmu-mir-6930	microRNA 6930	ncRNA	0.090000	0.696517	
mm_37429.1	chr4	122885988	122886188	-	1	NA	NA	NA	-31	NM_001301067	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.060000	0.621891	
mm_165112.1	chr19	58650267	58650467	+	1	NA	NA	NA	-19998	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.020000	0.492537	
mm_28921.1	chr3	98858010	98858210	-	1	NA	NA	NA	1684	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.000000	0.402985	
mm_35642.1	chr4	43519590	43519790	-	1	NA	NA	NA	3864	NM_009416	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.040000	0.577114	-95(AGGCATAAAAAG,-,0.00)
mm_85540.1	chr9	106673588	106673788	-	1	NA	NA	NA	12128	NM_011573	21767	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.020000	0.577114	
mm_59832.1	chr7	29303871	29304071	+	1	NA	NA	NA	-34	NM_013874	29861	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.150000	0.781095	
mm_36767.1	chr4	101390496	101390696	-	1	NA	NA	NA	-28693	NM_001177602	11639	Mm.42040	NM_009647	ENSMUSG00000028527	Ak4	AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e	adenylate kinase 4	protein-coding	0.015000	0.532338	
mm_17178.1	chr2	25356243	25356443	-	1	NA	NA	NA	-11	NM_031843	83768	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0.035000	0.577114	
mm_104467.1	chr11	95225533	95225733	-	1	NA	NA	NA	-35896	NM_053093	93670	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0.030000	0.636816	
mm_13616.1	chr2	113405121	113405321	+	1	NA	NA	NA	-35843	NM_001285459	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.015000	0.552239	
mm_134656.1	chr16	22060049	22060249	-	1	NA	NA	NA	50665	NR_027488	75826	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.005000	0.487562	-93(GCTTTTCTAGAC,+,0.00)
mm_125964.1	chr15	76270870	76271070	+	1	NA	NA	NA	-1131	NR_045747	100038659	Mm.448549	NR_045747		Mirt2	ENSMUSG00000075583|Gm10872|Gm24562	myocardial infraction associated transcript 2	ncRNA	0.005000	0.417910	
mm_44121.1	chr5	149458693	149458893	+	1	NA	NA	NA	19133	NM_001310765	75860	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	0.015000	0.507463	
mm_164161.1	chr15	73021499	73021699	+	1	NA	NA	NA	34213	NM_029640	76510	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.015000	0.562189	-33(TCTTTAAAACTG,+,0.00)
mm_150767.1	chr19	44243594	44243794	+	1	NA	NA	NA	40406	NM_024450	30049	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	0.015000	0.452736	
mm_117715.1	chr13	95327398	95327598	-	1	NA	NA	NA	731	NM_001302539	72114	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	0.010000	0.601990	
mm_10569.1	chr2	18064244	18064444	+	1	NA	NA	NA	-241	NM_001252560	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.160000	0.805970	
mm_49819.1	chr6	37442455	37442655	+	1	NA	NA	NA	-407	NM_178661	208647	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.055000	0.437811	76(GGATTTAAAAGA,-,0.00)
mm_148803.1	chr19	6263519	6263719	+	1	NA	NA	NA	-1024	NR_029830	723957		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0.015000	0.557214	
mm_74052.1	chr8	122282071	122282271	+	1	NA	NA	NA	30	NM_009569	22761	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.165000	0.796020	
mm_150644.1	chr19	41896202	41896402	+	1	NA	NA	NA	-149	NM_199447	107094	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	0.040000	0.467662	
mm_146635.1	chr18	10609982	10610182	-	1	NA	NA	NA	270	NM_001081222	77805	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	0.130000	0.716418	
mm_99790.1	chr11	107428178	107428378	+	1	NA	NA	NA	42442	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.020000	0.462687	
mm_118680.1	chr14	22100553	22100753	+	1	NA	NA	NA	80941	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.432836	
mm_14015.1	chr2	122149468	122149668	+	1	NA	NA	NA	1881	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.020000	0.427861	
mm_93717.1	chr10	118924711	118924911	-	1	NA	NA	NA	2332	NR_110482	216377	Mm.208936	NR_110482		Gm38403	C230029M16	predicted gene, 38403	ncRNA	0.020000	0.487562	
mm_68681.1	chr7	118995073	118995273	-	1	NA	NA	NA	38	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.140000	0.810945	
mm_103992.1	chr11	84846216	84846416	-	1	NA	NA	NA	17138	NR_046281	74995	Mm.84413	NR_046281	ENSMUSG00000086799	4930502E09Rik	-	RIKEN cDNA 4930502E09 gene	ncRNA	0.005000	0.437811	
mm_30984.1	chr4	34893680	34893880	+	1	NA	NA	NA	1	NM_009889	12640	Mm.1361	NM_009889	ENSMUSG00000028298	Cga	CG-alpha|FSHA|GPHA1|GPHalpha|HCG|LHA|Tsha|aGSU|alpha-GSU|alphaGSU|alphaSU	glycoprotein hormones, alpha subunit	protein-coding	0.005000	0.432836	-34(TGGTATAAAAGA,-,0.00)
mm_88868.1	chr10	80940549	80940749	+	1	NA	NA	NA	10558	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.010000	0.562189	
mm_94863.1	chr11	24077870	24078070	+	1	NA	NA	NA	-86	NM_016707	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.045000	0.626866	
mm_110791.1	chr12	72085214	72085414	-	1	NA	NA	NA	-1	NM_026038	67217	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	0.080000	0.626866	
mm_76726.1	chr8	94917948	94918148	-	1	NA	NA	NA	50	NM_001033533	234582	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	0.120000	0.781095	
mm_96506.1	chr11	68447519	68447719	+	1	NA	NA	NA	15494	NM_177320	320207	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik	phosphoinositide-3-kinase, regulatory subunit 5, p101	protein-coding	0.005000	0.422886	
mm_83533.1	chr9	46230362	46230562	-	1	NA	NA	NA	1832	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.050000	0.552239	
mm_69015.1	chr7	126704751	126704951	-	1	NA	NA	NA	-35	NM_009898	12721	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.075000	0.601990	
mm_170763.1	chr2	16032766	16032966	-	1	NA	NA	NA	-323438	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.015000	0.492537	-33(CCCTTTATAAGC,+,0.00),-33(CCCTTTATAAGC,-,0.00),-31(CTTTATAAGCGC,+,0.00)
mm_39094.1	chr4	154898925	154899125	-	1	NA	NA	NA	18	NM_025582	66469	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0.055000	0.621891	
mm_142334.1	chr17	43551179	43551379	-	1	NA	NA	NA	-7640	NM_001254953	100043332	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	0.000000	0.467662	
mm_7103.1	chr1	89102766	89102966	-	1	NA	NA	NA	32404	NM_133816	98402	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.020000	0.437811	
mm_124976.1	chr15	20449003	20449203	+	1	NA	NA	NA	217647	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.010000	0.547264	
mm_159856.1	chr5	138092737	138092937	+	1	NA	NA	NA	7753	NM_029869	74570	Mm.213114	NM_029869	ENSMUSG00000029729	Zkscan1	5930429A01Rik|9130423L19Rik|9230118B16Rik|AI646829|AI788588|C87323|KOX18|PHZ-37|ZNF139	zinc finger with KRAB and SCAN domains 1	protein-coding	0.015000	0.517413	
mm_34247.1	chr4	141244991	141245191	+	1	NA	NA	NA	2207	NM_172520	213649	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	0.015000	0.631841	
mm_43587.1	chr5	137747564	137747764	+	1	NA	NA	NA	1695	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.025000	0.671642	
mm_71182.1	chr8	40862167	40862367	+	1	NA	NA	NA	-100	NM_007514	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.125000	0.726368	
mm_134102.1	chr16	9995202	9995402	-	1	NA	NA	NA	-2769	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.070000	0.626866	
mm_167321.1	chr8	67695951	67696151	-	1	NA	NA	NA	122244	NM_027626	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.005000	0.393035	
mm_78694.1	chr9	40809153	40809353	+	1	NA	NA	NA	7980	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.035000	0.437811	
mm_145017.1	chr18	38714272	38714472	+	1	NA	NA	NA	-113104	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.055000	0.567164	
mm_109255.1	chr12	109459677	109459877	+	1	NA	NA	NA	6322	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.080000	0.641791	
mm_87027.1	chr10	28498677	28498877	+	1	NA	NA	NA	-169583	NM_001305663	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.010000	0.412935	
mm_75899.1	chr8	71272217	71272417	-	1	NA	NA	NA	273	NM_001163042	76478	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding	0.065000	0.631841	
mm_101505.1	chr11	32200180	32200380	-	1	NA	NA	NA	-1	NM_008374	16199	Mm.384	NM_008374	ENSMUSG00000020279	Il9r	-	interleukin 9 receptor	protein-coding	0.010000	0.547264	
mm_39985.1	chr5	32459496	32459696	+	1	NA	NA	NA	626	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.110000	0.766169	
mm_69122.1	chr7	127026239	127026439	-	1	NA	NA	NA	140	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.055000	0.711443	
mm_39457.1	chr5	17574653	17574853	+	1	NA	NA	NA	-63	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.140000	0.726368	
mm_114737.1	chr13	83732352	83732552	+	1	NA	NA	NA	4346	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.025000	0.567164	
mm_95014.1	chr11	31965470	31965670	+	1	NA	NA	NA	-63	NM_026262	67592	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	0.050000	0.696517	
mm_151855.1	chr19	5796720	5796920	-	1	NA	NA	NA	-839	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.020000	0.482587	
mm_128271.1	chr15	36794049	36794249	-	1	NA	NA	NA	389	NM_011740	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.100000	0.666667	-34(AGCCTTAAAAGG,-,0.00),-33(GCCTTAAAAGGT,+,0.00),-32(CCTTAAAAGGTC,+,0.00)
mm_44856.1	chr5	34243311	34243511	-	1	NA	NA	NA	44913	NM_001015039	231125	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.000000	0.537313	
mm_75622.1	chr8	64617558	64617758	-	1	NA	NA	NA	75451	NM_013494	12876	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|R74677|fat	carboxypeptidase E	protein-coding	0.035000	0.477612	
mm_118437.1	chr14	8063151	8063351	+	1	NA	NA	NA	-17062	NM_025938	67053	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	0.010000	0.482587	
mm_13315.1	chr2	102658842	102659042	+	1	NA	NA	NA	259	NM_001077514	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.100000	0.711443	
mm_45617.1	chr5	75835782	75835982	-	1	NA	NA	NA	142546	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.040000	0.557214	
mm_44753.1	chr5	31295585	31295785	-	1	NA	NA	NA	192	NM_022424	64339	Mm.292544	NM_022424	ENSMUSG00000038552	Fndc4	2810430J06Rik|6330410H20Rik|AB030187|AI838506|AW487863|FRCP1|Fnmp1	fibronectin type III domain containing 4	protein-coding	0.115000	0.771144	
mm_57088.1	chr6	122586651	122586851	-	1	NA	NA	NA	15693	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.015000	0.542289	
mm_97148.1	chr11	75461504	75461704	+	1	NA	NA	NA	65	NR_030711	100042498	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0.095000	0.671642	
mm_4171.1	chr1	171121558	171121758	+	1	NA	NA	NA	-3	NM_001081275	75472	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.010000	0.467662	-30(CCTCTTATGCCC,+,0.00)
mm_8435.1	chr1	152625064	152625264	-	1	NA	NA	NA	53	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.145000	0.756219	
mm_125741.1	chr15	73558293	73558493	+	1	NA	NA	NA	38133	NM_001168255	106068	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.005000	0.388060	
mm_54915.1	chr6	47798461	47798661	-	1	NA	NA	NA	5091	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.020000	0.527363	
mm_148749.1	chr19	6050542	6050742	+	1	NA	NA	NA	-692	NR_105954	102465597		NR_105954	ENSMUSG00000098928	Mir6988	Gm27593|mmu-mir-6988	microRNA 6988	ncRNA	0.030000	0.616915	
mm_146705.1	chr18	13971988	13972188	-	1	NA	NA	NA	645	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.025000	0.442786	
mm_115675.1	chr13	12799979	12800179	-	1	NA	NA	NA	0	NM_011118	18812	Mm.457984	NM_011118	ENSMUSG00000056457	Prl2c3	Ghd1|MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3	prolactin family 2, subfamily c, member 3	protein-coding	0.015000	0.442786	-33(GACTATATAAGA,-,0.00)
mm_117053.1	chr13	58399066	58399266	-	1	NA	NA	NA	3003	NM_001301343	15387	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.010000	0.323383	60(GAATTTTAAAGG,-,0.00)
mm_18382.1	chr2	60098634	60098834	-	1	NA	NA	NA	27006	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.045000	0.477612	
mm_140089.1	chr17	75465462	75465662	+	1	NA	NA	NA	24	NM_207246	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding	0.035000	0.542289	
mm_76943.1	chr8	105943298	105943498	-	1	NA	NA	NA	4	NM_008490	16816	Mm.1593	NM_008490	ENSMUSG00000035237	Lcat	AI046659|D8Wsu61e	lecithin cholesterol acyltransferase	protein-coding	0.020000	0.686567	-35(GTCCAGATAAGG,-,0.00)
mm_17937.1	chr2	35979748	35979948	-	1	NA	NA	NA	-224	NM_029774	74410	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0.080000	0.646766	
mm_67887.1	chr7	99350065	99350265	-	1	NA	NA	NA	3074	NM_009825	12406	Mm.22708	NM_009825	ENSMUSG00000070436	Serpinh1	BERF-1|Cbp1|Cbp2|Hsp47|J6|Serpinh2|gp46	serine (or cysteine) peptidase inhibitor, clade H, member 1	protein-coding	0.010000	0.442786	
mm_10295.1	chr2	10372458	10372658	+	1	NA	NA	NA	122	NM_177386	353282	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0.100000	0.706468	
mm_151922.1	chr19	5799863	5800063	-	1	NA	NA	NA	2709	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.000000	0.363184	
mm_24724.1	chr3	95282385	95282585	+	1	NA	NA	NA	-409	NM_173347	229589	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	0.020000	0.482587	
mm_28706.1	chr3	95556299	95556499	-	1	NA	NA	NA	-3278	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.005000	0.318408	
mm_22468.1	chr3	4093770	4093970	+	1	NA	NA	NA	585840	NM_013920	30942	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.000000	0.313433	
mm_89545.1	chr10	94575246	94575446	+	1	NA	NA	NA	89	NM_001168684	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.020000	0.557214	
mm_133926.1	chr16	3717983	3718183	-	1	NA	NA	NA	41	NM_001161790	54483	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.025000	0.502488	
mm_132186.1	chr16	32430837	32431037	+	1	NA	NA	NA	16	NM_009981	13026	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	0.090000	0.631841	
mm_65051.1	chr7	18656500	18656700	-	1	NA	NA	NA	125	NM_027403	72242	Mm.326858	NM_027403	ENSMUSG00000070796	Psg21	1600019C01Rik|1600025N01Rik|1600026N13Rik|cea8	pregnancy-specific glycoprotein 21	protein-coding	0.000000	0.482587	
mm_103209.1	chr11	70652907	70653107	-	1	NA	NA	NA	1643	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.010000	0.492537	
mm_59754.1	chr7	28825179	28825379	+	1	NA	NA	NA	-59	NM_016772	51798	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.085000	0.562189	
mm_95479.1	chr11	51261625	51261825	+	1	NA	NA	NA	1226	NM_177567	193286	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0.005000	0.363184	-7(CCTTTTCAAGAC,+,0.00)
mm_149931.1	chr19	26753557	26753757	+	1	NA	NA	NA	5254	NM_026003	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.010000	0.517413	
mm_33733.1	chr4	134102496	134102696	+	1	NA	NA	NA	13	NM_026257	67586	Mm.282029	NM_026257	ENSMUSG00000012126	Ubxn11	4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5	UBX domain protein 11	protein-coding	0.085000	0.631841	
mm_115482.1	chr13	3601365	3601565	-	1	NA	NA	NA	9643	NM_134063	105203	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	0.010000	0.343284	
mm_123533.1	chr14	66805114	66805314	-	1	NA	NA	NA	63386	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.005000	0.517413	-47(TTTTTTAAAGAG,+,0.00)
mm_168834.1	chr12	23010107	23010307	-	1	NA	NA	NA	36	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA	0.105000	0.746269	
mm_11229.1	chr2	29802574	29802774	+	1	NA	NA	NA	-6	NM_011989	26569	Mm.330113	NM_011989	ENSMUSG00000059316	Slc27a4	BB144259|FATP4	solute carrier family 27 (fatty acid transporter), member 4	protein-coding	0.105000	0.751244	
mm_75181.1	chr8	36952183	36952383	-	1	NA	NA	NA	159	NM_001194940	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.035000	0.497512	-88(GCATTTAGAGGA,+,0.00)
mm_103871.1	chr11	83525794	83525994	-	1	NA	NA	NA	-3795	NM_001045543	629303	Mm.390417	NM_001045543	ENSMUSG00000018925	Heatr9	Gm11435|OTTMUSG00000000990	HEAT repeat containing 9	protein-coding	0.010000	0.482587	
mm_102480.1	chr11	60106434	60106634	-	1	NA	NA	NA	1521	NM_009021	19377	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.055000	0.522388	
mm_9407.1	chr1	172274234	172274434	-	1	NA	NA	NA	-15910	NM_013734	27222	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	0.015000	0.522388	
mm_4816.1	chr1	185418183	185418383	+	1	NA	NA	NA	23536	NR_038006	319562	Mm.184335	NM_176943	ENSMUSG00000051295	9630028B13Rik	-	RIKEN cDNA 9630028B13 gene	ncRNA	0.030000	0.512438	
mm_50271.1	chr6	45158828	45159028	+	1	NA	NA	NA	98867	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.000000	0.268657	
mm_69558.1	chr7	135700083	135700283	-	1	NA	NA	NA	16196	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.005000	0.393035	
mm_89236.1	chr10	87679762	87679962	+	1	NA	NA	NA	158067	NM_008777	18478	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0.010000	0.417910	
mm_117653.1	chr13	93144467	93144667	-	1	NA	NA	NA	157	NM_023821	76469	Mm.33857	NM_023821	ENSMUSG00000047419	Cmya5	2310076E16Rik|2310076E21Rik|AA420382|AI504003|Srfsd|Tims|sr553	cardiomyopathy associated 5	protein-coding	0.115000	0.691542	-76(TTCTATTTAAAG,-,0.00),-74(CTATTTAAAGGC,+,0.00)
mm_101195.1	chr11	18891025	18891225	-	1	NA	NA	NA	127844	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.005000	0.432836	
mm_13214.1	chr2	96317726	96317926	+	1	NA	NA	NA	-343	NM_001289742	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.025000	0.532338	
mm_123212.1	chr14	59412065	59412265	-	1	NA	NA	NA	-18653	NM_001164289	628705	Mm.479244	NM_001164289	ENSMUSG00000091144	Phf11c	EG628705|Gm6907|Phf11	PHD finger protein 11C	protein-coding	0.015000	0.437811	
mm_36699.1	chr4	96663988	96664188	-	1	NA	NA	NA	31	NM_010007	13109	Mm.12838	NM_010007	ENSMUSG00000052520	Cyp2j5	-	cytochrome P450, family 2, subfamily j, polypeptide 5	protein-coding	0.000000	0.462687	
mm_173092.1	chrX	150814146	150814346	-	1	NA	NA	NA	93	NM_030700	80884	Mm.22575	NM_030700	ENSMUSG00000025268	Maged2	4833439A22Rik|Mage-d2|ORF1	melanoma antigen, family D, 2	protein-coding	0.015000	0.582090	
mm_52460.1	chr6	113697077	113697277	+	1	NA	NA	NA	127	NM_001033463	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.145000	0.791045	
mm_97000.1	chr11	70764356	70764556	+	1	NA	NA	NA	9	NM_177565	193043	Mm.40966	NM_177565	ENSMUSG00000043602	Zfp3	AI854635|B230309J24|Fnp-1|Zfp-3	zinc finger protein 3	protein-coding	0.145000	0.756219	
mm_87714.1	chr10	60078777	60078977	+	1	NA	NA	NA	-27380	NM_052994	94214	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.010000	0.487562	
mm_137194.1	chr17	23829127	23829327	+	1	NA	NA	NA	-118	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.100000	0.666667	
mm_40620.1	chr5	64803498	64803698	+	1	NA	NA	NA	75	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.155000	0.781095	
mm_91647.1	chr10	42474978	42475178	-	1	NA	NA	NA	3487	NM_145743	215951	Mm.89646	NM_145743	ENSMUSG00000038302	Lace1	CG8520	lactation elevated 1	protein-coding	0.015000	0.477612	
mm_131812.1	chr16	22919170	22919370	+	1	NA	NA	NA	888	NM_001083905	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.010000	0.477612	
mm_93353.1	chr10	102512307	102512507	-	1	NA	NA	NA	185	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding	0.005000	0.512438	-22(CCTTTTCAACTC,+,0.00)
mm_9594.1	chr1	174921697	174921897	-	1	NA	NA	NA	22	NM_011825	23893	Mm.25760	NM_011825	ENSMUSG00000050069	Grem2	Gremlin2|Prdc	gremlin 2, DAN family BMP antagonist	protein-coding	0.055000	0.611940	
mm_18340.1	chr2	58155699	58155899	-	1	NA	NA	NA	4323	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.020000	0.507463	
mm_44759.1	chr5	31571254	31571454	-	1	NA	NA	NA	43	NR_102275	100740	Mm.23370	NR_102275		AI839979	-	expressed sequence AI839979	ncRNA	0.040000	0.606965	
mm_163216.1	chr11	101176120	101176320	+	1	NA	NA	NA	103	NM_016782	53321	Mm.474527	NM_016782	ENSMUSG00000017167	Cntnap1	AI841080|Caspr|NCP1|Nrxn4|p190|shm	contactin associated protein-like 1	protein-coding	0.050000	0.606965	
mm_123644.1	chr14	68655638	68655838	-	1	NA	NA	NA	104	NM_010082	13522	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	0.015000	0.517413	-28(TCCCTTAAGAGG,-,0.00),-27(CCCTTAAGAGGA,+,0.00)
mm_162368.1	chr1	65928116	65928316	+	1	NA	NA	NA	1694	NM_027010	12969	Mm.275362	NM_027010	ENSMUSG00000025945	Crygf	3110001K11Rik|Cryg-2|DGcry-2|Len-2	crystallin, gamma F	protein-coding	0.035000	0.482587	
mm_163504.1	chr12	112914492	112914692	-	1	NA	NA	NA	5949	NR_105906	102465567		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0.020000	0.547264	
mm_78928.1	chr9	45079087	45079287	+	1	NA	NA	NA	4	NM_001005421	270152	Mm.190461	NM_001005421	ENSMUSG00000048534	Amica1	AMICA|Crea7|Gm638|Jaml	adhesion molecule, interacts with CXADR antigen 1	protein-coding	0.020000	0.527363	
mm_6321.1	chr1	71606692	71606892	-	1	NA	NA	NA	46442	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.015000	0.487562	
mm_81593.1	chr9	110509860	110510060	+	1	NA	NA	NA	-22637	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.010000	0.487562	
mm_22878.1	chr3	29314630	29314830	+	1	NA	NA	NA	-102093	NR_030422	791072		NR_030422	ENSMUSG00000076120	Mir551b	Mirn551b|mir-551b	microRNA 551b	ncRNA	0.005000	0.268657	
mm_134482.1	chr16	18623249	18623449	-	1	NA	NA	NA	-946	NM_010327	14724	Mm.475622	NM_010327	ENSMUSG00000050761	Gp1bb	-	glycoprotein Ib, beta polypeptide	protein-coding	0.050000	0.651741	
mm_98625.1	chr11	95973054	95973254	+	1	NA	NA	NA	-9771	NR_037223	100526468		NR_037223	ENSMUSG00000093358	Mir3063	mmu-mir-3063	microRNA 3063	ncRNA	0.040000	0.512438	
mm_160085.1	chr7	13989558	13989758	-	1	NA	NA	NA	-70	NM_001101534	434121	Mm.482762	NM_001101534	ENSMUSG00000074377	Sult2a4	EG434121|Gm5584	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 4	protein-coding	0.000000	0.368159	
mm_108432.1	chr12	82246563	82246763	+	1	NA	NA	NA	-64686	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.010000	0.432836	
mm_17546.1	chr2	29870106	29870306	-	1	NA	NA	NA	712	NM_207298	99151	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	0.015000	0.557214	
mm_36229.1	chr4	62979478	62979678	-	1	NA	NA	NA	14004	NM_028326	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.010000	0.432836	
mm_20594.1	chr2	131174702	131174902	-	1	NA	NA	NA	8	NM_027641	70997	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	0.050000	0.512438	
mm_141357.1	chr17	28691127	28691327	-	1	NA	NA	NA	-115	NM_001168508	26416	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.135000	0.751244	
mm_149031.1	chr19	8802404	8802604	+	1	NA	NA	NA	8	NM_133759	75291	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	0.045000	0.562189	
mm_13337.1	chr2	102787076	102787276	+	1	NA	NA	NA	80738	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.000000	0.358209	
mm_172037.1	chr6	125191583	125191783	-	1	NA	NA	NA	-97	NM_146171	68298	Mm.257590	NM_146171	ENSMUSG00000038252	Ncapd2	2810406C15Rik|2810465G24Rik|CAP-D2|CNAP1|mKIAA0159	non-SMC condensin I complex, subunit D2	protein-coding	0.105000	0.651741	
mm_117084.1	chr13	59694004	59694204	-	1	NA	NA	NA	-3	NM_183290	70900	Mm.73124	NM_183290	ENSMUSG00000049902	4921517D22Rik	-	RIKEN cDNA 4921517D22 gene	protein-coding	0.010000	0.492537	
mm_105750.1	chr11	109472525	109472725	-	1	NA	NA	NA	604	NM_134038	104681	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.050000	0.557214	-46(TACCTTAAAGGG,-,0.00),-44(CCTTAAAGGGTG,+,0.00)
mm_112527.1	chr13	9276622	9276822	+	1	NA	NA	NA	197	NM_001081426	208440	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.095000	0.711443	
mm_162982.1	chr11	21370675	21370875	-	1	NA	NA	NA	-146	NM_139297	216558	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0.085000	0.726368	59(GGCTATTTATGG,-,0.00),61(CTATTTATGGGC,+,0.00)
mm_43199.1	chr5	129020414	129020614	+	1	NA	NA	NA	358	NM_009391	19384	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	0.145000	0.761194	
mm_102952.1	chr11	69662483	69662683	-	1	NA	NA	NA	66	NR_125917	24070	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	0.095000	0.641791	
mm_29711.1	chr3	123688586	123688786	-	1	NA	NA	NA	2166	NR_121616	83398	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	0.005000	0.398010	
mm_138880.1	chr17	43360298	43360498	+	1	NA	NA	NA	-29068	NM_001081178	224792	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	0.035000	0.582090	
mm_155904.1	chrX	101682842	101683042	+	1	NA	NA	NA	42724	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.005000	0.417910	-92(CTTTTTATAGGT,+,0.00)
mm_108602.1	chr12	85468881	85469081	+	1	NA	NA	NA	-4920	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.040000	0.482587	
mm_92059.1	chr10	62513388	62513588	-	1	NA	NA	NA	-5733	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.025000	0.502488	-1(CTCTTTAGAGAG,+,0.00)
mm_87076.1	chr10	29211581	29211781	+	1	NA	NA	NA	38	NM_001162537	212448	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	0.015000	0.452736	
mm_29967.1	chr3	133467674	133467874	-	1	NA	NA	NA	76616	NM_001346736	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.000000	0.437811	
mm_155080.1	chrX	47912337	47912537	+	1	NA	NA	NA	-19	NM_177215	320634	Mm.210343	NM_177215	ENSMUSG00000001173	Ocrl	9530014D17Rik|BB143339|OCRL1	oculocerebrorenal syndrome of Lowe	protein-coding	0.080000	0.721393	
mm_118767.1	chr14	22468778	22468978	+	1	NA	NA	NA	73920	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.000000	0.393035	
mm_16781.1	chr2	9887876	9888076	-	1	NA	NA	NA	1564	NR_040511	77682	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA	0.015000	0.512438	-94(TCATTTATAGTG,+,0.00)
mm_46212.1	chr5	98185884	98186084	-	1	NA	NA	NA	5115	NM_029947	77630	Mm.332511	NM_029947	ENSMUSG00000035456	Prdm8	4930565F05Rik|PFM5	PR domain containing 8	protein-coding	0.155000	0.781095	
mm_79875.1	chr9	65188764	65188964	+	1	NA	NA	NA	-25826	NM_177460	214424	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.010000	0.467662	-90(GCACTTAAAAAG,-,0.00)
mm_155937.1	chrX	103672464	103672664	+	1	NA	NA	NA	41978	NM_029158	75064	Mm.159414	NM_029158	ENSMUSG00000031330	Zcchc13	4930513O09Rik|Cnbp2	zinc finger, CCHC domain containing 13	protein-coding	0.020000	0.477612	
mm_63453.1	chr7	127519561	127519761	+	1	NA	NA	NA	-6792	NR_024331	629159	Mm.256720	NR_024331	ENSMUSG00000101225	1700008J07Rik	AW048743	RIKEN cDNA 1700008J07 gene	ncRNA	0.010000	0.527363	
mm_111479.1	chr12	98733821	98734021	-	1	NA	NA	NA	724	NM_011877	24000	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0.035000	0.537313	
mm_11238.1	chr2	29869410	29869610	+	1	NA	NA	NA	16	NM_207298	99151	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	0.060000	0.701493	
mm_56175.1	chr6	88044213	88044413	-	1	NA	NA	NA	704	NM_001293653	19349	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.000000	0.422886	25(AGGCATATAAGG,-,0.00)
mm_15679.1	chr2	163551528	163551728	+	1	NA	NA	NA	4473	NM_008261	15378	Mm.202383	NM_008261	ENSMUSG00000017950	Hnf4a	HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14	hepatic nuclear factor 4, alpha	protein-coding	0.050000	0.592040	
mm_19131.1	chr2	80129442	80129642	-	1	NA	NA	NA	-130	NM_001159582	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.025000	0.472637	
mm_96825.1	chr11	69995748	69995948	+	1	NA	NA	NA	82	NM_030064	78246	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.095000	0.716418	
mm_83367.1	chr9	44454621	44454821	-	1	NA	NA	NA	46	NM_009476	22269	Mm.4453	NM_009476	ENSMUSG00000041523	Upk2	AW491716|UPII	uroplakin 2	protein-coding	0.015000	0.611940	
mm_7809.1	chr1	131527432	131527632	-	1	NA	NA	NA	-171	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.045000	0.537313	
mm_12395.1	chr2	70069955	70070155	+	1	NA	NA	NA	30929	NM_177376	329421	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0.005000	0.497512	
mm_156452.1	chrX	142720335	142720535	+	1	NA	NA	NA	-18565	NR_030523	723976		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	0.010000	0.402985	
mm_152694.1	chr19	16781002	16781202	-	1	NA	NA	NA	-169	NM_173028	271564	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.130000	0.681592	
mm_80777.1	chr9	95581393	95581593	+	1	NA	NA	NA	21676	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.010000	0.482587	
mm_10446.1	chr2	14271604	14271804	+	1	NA	NA	NA	10701	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.010000	0.422886	
mm_70197.1	chr7	144553545	144553745	-	1	NA	NA	NA	84	NM_001033319	233977	Mm.490347	NM_001033319	ENSMUSG00000037519	Ppfia1	C030014K08Rik|C87158|LIP.1|LIP1	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	protein-coding	0.210000	0.815920	
mm_143625.1	chr17	78877179	78877379	-	1	NA	NA	NA	5293	NM_011163	19106	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	0.005000	0.462687	
mm_93936.1	chr10	127188647	127188847	-	1	NA	NA	NA	1076	NM_001166413	52666	Mm.272230	NM_028027	ENSMUSG00000019467	Arhgef25	2410008H17Rik|D10Ertd610e|GEFT	Rho guanine nucleotide exchange factor (GEF) 25	protein-coding	0.120000	0.771144	
mm_128140.1	chr15	31521247	31521447	-	1	NA	NA	NA	9690	NM_172606	223455	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0.005000	0.383085	
mm_71188.1	chr8	40866516	40866716	+	1	NA	NA	NA	4249	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.025000	0.393035	
mm_33404.1	chr4	129839064	129839264	+	1	NA	NA	NA	18456	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.020000	0.383085	
mm_149599.1	chr19	16318320	16318520	+	1	NA	NA	NA	-3416	NR_105832	102465218		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.030000	0.512438	
mm_147916.1	chr18	65584053	65584253	-	1	NA	NA	NA	3923	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.020000	0.542289	
mm_50153.1	chr6	41544906	41545106	+	1	NA	NA	NA	23230	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.393035	
mm_116488.1	chr13	44480208	44480408	-	1	NA	NA	NA	40581	NR_045489	69491	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.015000	0.477612	
mm_135825.1	chr16	58507519	58507719	-	1	NA	NA	NA	15693	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.015000	0.417910	
mm_48078.1	chr5	136869633	136869833	-	1	NA	NA	NA	13374	NM_024474	140709	Mm.295020	NM_024474	ENSMUSG00000004415	Col26a1	9430032K24Rik|BC002218|Col26a|Emid2|Emu2	collagen, type XXVI, alpha 1	protein-coding	0.005000	0.577114	
mm_154401.1	chrM	13762	13962	+	1	NA	NA	NA	NA	NA									0.010000	0.333333	
mm_40689.1	chr5	65763896	65764096	+	1	NA	NA	NA	475	NM_001024917	333789	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.145000	0.776119	
mm_153213.1	chr19	34747107	34747307	-	1	NA	NA	NA	-96	NM_172838	240638	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0.105000	0.746269	
mm_7493.1	chr1	121332567	121332767	-	1	NA	NA	NA	-78	NM_178082	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.000000	0.462687	
mm_76681.1	chr8	94012523	94012723	-	1	NA	NA	NA	17	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.185000	0.830846	
mm_70264.1	chr8	3567882	3568082	+	1	NA	NA	NA	-16	NM_001024728	546049	Mm.358733	NM_001024728	ENSMUSG00000065952	C330021F23Rik	2610027C06Rik|Rps23r1|Rps23rg1	RIKEN cDNA C330021F23 gene	protein-coding	0.010000	0.482587	
mm_24918.1	chr3	96274930	96275130	+	1	NA	NA	NA	5330	NM_175666	319189	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	0.000000	0.353234	
mm_53193.1	chr6	125494787	125494987	+	1	NA	NA	NA	-132	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.050000	0.601990	
mm_138342.1	chr17	34911150	34911350	+	1	NA	NA	NA	-3216	NM_023557	70129	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22	solute carrier family 44, member 4	protein-coding	0.020000	0.587065	
mm_53543.1	chr6	136827653	136827853	+	1	NA	NA	NA	463	NM_021714	60321	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	0.120000	0.686567	
mm_44136.1	chr5	150080541	150080741	+	1	NA	NA	NA	61966	NM_001289566	140498	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	0.020000	0.517413	-94(CCTTTTATATAG,+,0.00),-92(TTTTATATAGCA,+,0.00)
mm_37497.1	chr4	123686618	123686818	-	1	NA	NA	NA	-2358	NM_001199136	11426	Mm.402299	NM_009600	ENSMUSG00000028649	Macf1	ABP620|Acf7|Aclp7|MACF|R74989|mKIAA0465	microtubule-actin crosslinking factor 1	protein-coding	0.090000	0.726368	
mm_23810.1	chr3	79886017	79886217	+	1	NA	NA	NA	187	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.040000	0.527363	-94(GAGTTTAAAAGG,-,0.00)
mm_49824.1	chr6	37705946	37706146	+	1	NA	NA	NA	-164765	NM_001272064	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.005000	0.427861	
mm_67223.1	chr7	74543188	74543388	-	1	NA	NA	NA	11492	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.035000	0.457711	
mm_34508.1	chr4	148804330	148804530	+	1	NA	NA	NA	38	NM_027195	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.115000	0.626866	
mm_108636.1	chr12	85746462	85746662	+	1	NA	NA	NA	23	NM_145447	217721	Mm.301076	NM_145447	ENSMUSG00000034258	Mfsd7c	CCT|Flvcr2	major facilitator superfamily domain containing 7C	protein-coding	0.090000	0.696517	
mm_167126.1	chr7	126447539	126447739	-	1	NA	NA	NA	15434	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.010000	0.592040	
mm_21459.1	chr2	160872838	160873038	-	1	NA	NA	NA	52	NM_177263	320799	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	0.145000	0.756219	
mm_30599.1	chr4	6384962	6385162	+	1	NA	NA	NA	19382	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.015000	0.388060	
mm_160378.1	chr8	41084867	41085067	-	1	NA	NA	NA	29700	NM_001286413	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.020000	0.388060	
mm_67179.1	chr7	73617585	73617785	-	1	NA	NA	NA	-59290	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.030000	0.447761	
mm_20539.1	chr2	131056471	131056671	-	1	NA	NA	NA	7243	NR_136922	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.015000	0.552239	
mm_43243.1	chr5	130079357	130079557	+	1	NA	NA	NA	87	NM_001130476	22021	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0.160000	0.766169	
mm_28603.1	chr3	94582598	94582798	-	1	NA	NA	NA	18	NM_001082484	76742	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.125000	0.721393	
mm_66165.1	chr7	31291716	31291916	-	1	NA	NA	NA	0	NM_020563	57426	Mm.6205	NM_020563	ENSMUSG00000062556	Scgb1b2	Abpa2|Abph|Apbh|LGP|Mja1l|Scgb1b1	secretoglobin, family 1B, member 2	protein-coding	0.010000	0.582090	
mm_131612.1	chr16	19760111	19760311	+	1	NA	NA	NA	-23	NM_001159408	108105	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	0.045000	0.626866	
mm_21941.1	chr2	167060352	167060552	-	1	NA	NA	NA	-2482	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.005000	0.442786	
mm_5803.1	chr1	52190830	52191030	-	1	NA	NA	NA	42302	NM_001081081	14660	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.000000	0.373134	-11(CCTTTAAAATGC,+,0.00)
mm_82752.1	chr9	26829433	26829633	-	1	NA	NA	NA	-23065	NM_001310768	244757	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0.010000	0.412935	
mm_79353.1	chr9	53771641	53771841	+	1	NA	NA	NA	206	NM_028060	72022	Mm.26159	NM_028060	ENSMUSG00000042195	Slc35f2	1500009K05Rik|AU019213	solute carrier family 35, member F2	protein-coding	0.135000	0.726368	
mm_166374.1	chr5	128585254	128585454	+	1	NA	NA	NA	15333	NR_015517	319616	Mm.387738	NR_015517	ENSMUSG00000072591	5930412G12Rik	-	RIKEN cDNA 5930412G12 gene	ncRNA	0.020000	0.532338	
mm_20257.1	chr2	126600482	126600682	-	1	NA	NA	NA	18096	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.035000	0.497512	
mm_429.1	chr1	34473129	34473329	+	1	NA	NA	NA	13483	NM_011206	19253	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.030000	0.562189	
mm_42110.1	chr5	110594698	110594898	+	1	NA	NA	NA	-8707	NM_001122639	231605	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	0.030000	0.467662	
mm_74742.1	chr8	18950849	18951049	-	1	NA	NA	NA	26	NM_176951	319581	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.070000	0.681592	
mm_54171.1	chr6	23650163	23650363	-	1	NA	NA	NA	42	NM_198251	386611	Mm.436547	NM_198251	ENSMUSG00000051956	Rnf133	Greul2	ring finger protein 133	protein-coding	0.000000	0.373134	
mm_139558.1	chr17	56877034	56877234	+	1	NA	NA	NA	1501	NM_030141	78625	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0.015000	0.452736	
mm_85103.1	chr9	94538184	94538384	-	1	NA	NA	NA	-203	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0.150000	0.781095	
mm_17668.1	chr2	32087322	32087522	-	1	NA	NA	NA	-3717	NM_175511	241303	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.005000	0.442786	
mm_73019.1	chr8	93969075	93969275	+	1	NA	NA	NA	43465	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.010000	0.293532	
mm_137338.1	chr17	25133351	25133551	+	1	NA	NA	NA	60	NM_011930	26373	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.090000	0.611940	
mm_36103.1	chr4	58553659	58553859	-	1	NA	NA	NA	-268	NM_010336	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.040000	0.616915	
mm_26369.1	chr3	142560487	142560687	+	1	NA	NA	NA	91	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.015000	0.492537	
mm_93367.1	chr10	105195888	105196088	-	1	NA	NA	NA	378491	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.000000	0.338308	
mm_27844.1	chr3	79156195	79156395	-	1	NA	NA	NA	-10420	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.005000	0.353234	
mm_53141.1	chr6	125221796	125221996	+	1	NA	NA	NA	6315	NM_001080557	22317	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	0.005000	0.507463	
mm_127027.1	chr15	96287471	96287671	+	1	NA	NA	NA	49	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.140000	0.776119	
mm_7488.1	chr1	121327690	121327890	-	1	NA	NA	NA	-112	NM_001271531	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.100000	0.721393	
mm_100173.1	chr11	116532456	116532656	+	1	NA	NA	NA	112	NM_001172473	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.065000	0.587065	
mm_149553.1	chr19	12627562	12627762	+	1	NA	NA	NA	-5646	NM_145935	107146	Mm.39974	NM_145935	ENSMUSG00000063683	Glyat	A330009E03Rik|ACGNAT|AI195249|AI315345|CAT|GAT	glycine-N-acyltransferase	protein-coding	0.000000	0.283582	
mm_149911.1	chr19	26605012	26605212	+	1	NA	NA	NA	-48	NM_011416	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.090000	0.636816	
mm_14457.1	chr2	131188988	131189188	+	1	NA	NA	NA	2140	NM_001111075	12531	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	0.015000	0.577114	
mm_91341.1	chr10	26338048	26338248	-	1	NA	NA	NA	35886	NM_001347467	237339	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	l(3)mbt-like 3 (Drosophila)	protein-coding	0.015000	0.427861	
mm_68662.1	chr7	118850679	118850879	-	1	NA	NA	NA	4834	NM_001168220	66356	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0.015000	0.572139	
mm_137054.1	chr17	17928191	17928391	+	1	NA	NA	NA	40467	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.005000	0.402985	55(TTCCATAAAAGA,-,0.00)
mm_33480.1	chr4	130818796	130818996	+	1	NA	NA	NA	26359	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.040000	0.651741	
mm_1953.1	chr1	86356993	86357193	+	1	NA	NA	NA	-766	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.010000	0.472637	
mm_26561.1	chr3	146500033	146500233	+	1	NA	NA	NA	297	NM_010318	14707	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	0.130000	0.766169	
mm_119425.1	chr14	45358663	45358863	+	1	NA	NA	NA	7577	NM_019637	56291	Mm.202561	NM_019637	ENSMUSG00000053205	Styx	0610039A20Rik|hStyxb	serine/threonine/tyrosine interaction protein	protein-coding	0.000000	0.343284	
mm_73548.1	chr8	108936979	108937179	+	1	NA	NA	NA	219	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.020000	0.338308	
mm_111678.1	chr12	103355892	103356092	-	1	NA	NA	NA	9	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.050000	0.542289	-75(ACCCATATATGG,-,0.00),-73(CCATATATGGGC,+,0.00)
mm_50164.1	chr6	41553448	41553648	+	1	NA	NA	NA	31772	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.437811	
mm_74363.1	chr8	128359234	128359434	+	1	NA	NA	NA	93	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.050000	0.542289	
mm_98161.1	chr11	87699805	87700005	+	1	NA	NA	NA	381	NR_045139	68690	Mm.342009	NR_045139		1110028F11Rik	-	RIKEN cDNA 1110028F11 gene	ncRNA	0.020000	0.442786	
mm_90907.1	chr10	11281120	11281320	-	1	NA	NA	NA	-110	NM_027968	71865	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0.135000	0.741294	
mm_106890.1	chr12	8012140	8012340	+	1	NA	NA	NA	34563	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.457711	
mm_91242.1	chr10	22306436	22306636	-	1	NA	NA	NA	-184	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.010000	0.557214	
mm_116154.1	chr13	30235097	30235297	-	1	NA	NA	NA	98707	NM_153546	218121	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	0.005000	0.407960	-51(GTCTATAAATAG,-,0.00)
mm_14702.1	chr2	142576805	142577005	+	1	NA	NA	NA	324559	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.055000	0.502488	-83(CTGTTTTAAAAG,-,0.00)
mm_131275.1	chr16	11021563	11021763	+	1	NA	NA	NA	12765	NR_040518	100043147	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.000000	0.452736	
mm_14164.1	chr2	126607634	126607834	+	1	NA	NA	NA	10944	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.020000	0.457711	
mm_159589.1	chr4	123294640	123294840	+	1	NA	NA	NA	11455	NM_148917	230721	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	0.035000	0.572139	
mm_12335.1	chr2	69669806	69670006	+	1	NA	NA	NA	-214	NM_001081087	228003	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	0.010000	0.412935	
mm_12284.1	chr2	69008441	69008641	+	1	NA	NA	NA	-127259	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.005000	0.368159	
mm_106470.1	chr11	120098588	120098788	-	1	NA	NA	NA	43	NM_183137	78777	Mm.23672	NM_183137	ENSMUSG00000025377	Tepsin	2410002I01Rik|Enthd2	TEPSIN, adaptor related protein complex 4 accessory protein	protein-coding	0.100000	0.666667	
mm_8697.1	chr1	157412499	157412699	-	1	NA	NA	NA	-4	NM_177644	226525	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	0.120000	0.681592	
mm_109344.1	chr12	109600722	109600922	+	1	NA	NA	NA	-3123	NR_028261	75745	Mm.293263	NR_028261		Rian	5530401N18Rik|C130089L09Rik|Meg8	RNA imprinted and accumulated in nucleus	ncRNA	0.005000	0.407960	
mm_52742.1	chr6	120465777	120465977	+	1	NA	NA	NA	2680	NM_008359	16172	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.010000	0.427861	
mm_25679.1	chr3	122082524	122082724	+	1	NA	NA	NA	38164	NM_007378	11304	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0.015000	0.373134	
mm_13020.1	chr2	91028096	91028296	+	1	NA	NA	NA	-7431	NM_009023	19400	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	0.015000	0.457711	-29(AAGTATAAAAAG,-,0.00)
mm_23554.1	chr3	62159137	62159337	+	1	NA	NA	NA	-179540	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	0.045000	0.537313	
mm_54039.1	chr6	12786560	12786760	-	1	NA	NA	NA	-37407	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding	0.005000	0.417910	76(CTCTTTATGGAC,+,0.00)
mm_99270.1	chr11	101253484	101253684	+	1	NA	NA	NA	-123	NM_001284412	28084	Mm.301020	NM_026776	ENSMUSG00000078656	Vps25	1110020N13Rik|AW107467|D11Wsu68e	vacuolar protein sorting 25	protein-coding	0.065000	0.582090	
mm_92637.1	chr10	80336267	80336467	-	1	NA	NA	NA	6222	NM_139292	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.040000	0.557214	
mm_65143.1	chr7	19577936	19578136	-	1	NA	NA	NA	749	NM_022409	63872	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0.015000	0.552239	
mm_105320.1	chr11	102887964	102888164	-	1	NA	NA	NA	2895	NM_025766	66784	Mm.483216	NM_025766	ENSMUSG00000075510	Fam187a	4933439F11Rik	family with sequence similarity 187, member A	protein-coding	0.010000	0.587065	
mm_145356.1	chr18	56676184	56676384	+	1	NA	NA	NA	-31529	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.030000	0.557214	-33(GCATATAAAAGC,-,0.00)
mm_163820.1	chr14	19416627	19416827	-	1	NA	NA	NA	185860	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.338308	
mm_3851.1	chr1	160881453	160881653	+	1	NA	NA	NA	-24858	NM_001024952	381305	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	0.000000	0.522388	6(CACTATAAAAGG,-,0.00)
mm_144285.1	chr18	11947166	11947366	+	1	NA	NA	NA	-106828	NR_035447	100316686		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0.020000	0.557214	
mm_73335.1	chr8	105304036	105304236	+	1	NA	NA	NA	-1465	NM_172760	234683	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	0.030000	0.492537	
mm_96956.1	chr11	70615769	70615969	+	1	NA	NA	NA	-25	NM_001145537	668433	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.020000	0.512438	
mm_22923.1	chr3	31098180	31098380	+	1	NA	NA	NA	3222	NM_001039090	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.020000	0.472637	
mm_151284.1	chr19	55284154	55284354	+	1	NA	NA	NA	30885	NM_027976	433256	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.010000	0.497512	
mm_124727.1	chr15	6580250	6580450	+	1	NA	NA	NA	503	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.025000	0.517413	
mm_52156.1	chr6	98018394	98018594	+	1	NA	NA	NA	26711	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.015000	0.388060	
mm_65577.1	chr7	27196016	27196216	-	1	NA	NA	NA	155	NM_015782	53607	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0.090000	0.616915	
mm_114213.1	chr13	56166425	56166625	+	1	NA	NA	NA	12360	NM_145976	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.005000	0.482587	
mm_85301.1	chr9	100506750	100506950	-	1	NA	NA	NA	6	NM_001324530	17973	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0.005000	0.417910	
mm_79633.1	chr9	59540840	59541040	+	1	NA	NA	NA	1400	NM_010421	15211	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.015000	0.512438	
mm_38813.1	chr4	148444664	148444864	-	1	NA	NA	NA	-13	NM_027873	71707	Mm.292503	NM_027873	ENSMUSG00000047719	Ubiad1	1200002M06Rik|AI426463|AW320947|Tere1	UbiA prenyltransferase domain containing 1	protein-coding	0.100000	0.706468	
mm_160896.1	chr11	73234192	73234392	+	1	NA	NA	NA	143	NM_001001445	193034	Mm.447485	NM_001001445	ENSMUSG00000005952	Trpv1	OTRPC1|TRPV1alpha|TRPV1beta|VR-1|Vr1	transient receptor potential cation channel, subfamily V, member 1	protein-coding	0.010000	0.582090	
mm_158789.1	chrX	167209062	167209262	-	1	NA	NA	NA	56	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.095000	0.616915	
mm_68106.1	chr7	102018131	102018331	-	1	NA	NA	NA	-76	NM_010531	16068	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.015000	0.532338	
mm_66989.1	chr7	64052496	64052696	-	1	NA	NA	NA	-101239	NM_001039104	17364	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.025000	0.552239	
mm_88370.1	chr10	75993708	75993908	+	1	NA	NA	NA	-15118	NR_105836	102466646		NR_105836	ENSMUSG00000098817	Mir6409	Gm27787|mmu-mir-6409	microRNA 6409	ncRNA	0.035000	0.557214	
mm_152315.1	chr19	9905769	9905969	-	1	NA	NA	NA	-6336	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.005000	0.482587	
mm_127625.1	chr15	102462205	102462405	+	1	NA	NA	NA	3135	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.025000	0.611940	
mm_67153.1	chr7	73537627	73537827	-	1	NA	NA	NA	4019	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.065000	0.567164	
mm_20513.1	chr2	130642691	130642891	-	1	NA	NA	NA	53	NM_197945	241638	Mm.440130	NM_197945	ENSMUSG00000037703	Lzts3	Prosapip1	leucine zipper, putative tumor suppressor family member 3	protein-coding	0.120000	0.766169	
mm_35210.1	chr4	19610950	19611150	-	1	NA	NA	NA	35984	NM_025476	66302	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	0.015000	0.363184	
mm_111846.1	chr12	107938679	107938879	-	1	NA	NA	NA	64635	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.005000	0.422886	
mm_147493.1	chr18	47368788	47368988	-	1	NA	NA	NA	-18	NM_001311097	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.110000	0.686567	
mm_68853.1	chr7	126369367	126369567	-	1	NA	NA	NA	101	NM_010689	16797	Mm.10280	NM_010689	ENSMUSG00000030742	Lat	p36-38|pp36	linker for activation of T cells	protein-coding	0.045000	0.651741	
mm_99228.1	chr11	101055414	101055614	+	1	NA	NA	NA	-14580	NM_013792	27419	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.055000	0.601990	
mm_49227.1	chr6	15799382	15799582	+	1	NA	NA	NA	78821	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.005000	0.417910	
mm_83786.1	chr9	52168578	52168778	-	1	NA	NA	NA	-567	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.185000	0.830846	
mm_125896.1	chr15	75905370	75905570	+	1	NA	NA	NA	3874	NM_001285433	66656	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0.015000	0.557214	
mm_100276.1	chr11	117782209	117782409	+	1	NA	NA	NA	12	NM_001195089	217356	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0.035000	0.646766	
mm_5577.1	chr1	39551815	39552015	-	1	NA	NA	NA	-3075	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.035000	0.522388	
mm_171787.1	chr5	113661641	113661841	-	1	NA	NA	NA	-11351	NM_008153	14747	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.020000	0.552239	-92(GCTCTTATGGTG,+,0.00)
mm_52885.1	chr6	122521740	122521940	+	1	NA	NA	NA	8164	NM_015776	50530	Mm.41931	NM_015776	ENSMUSG00000030116	Mfap5	MAGP-2|MFAP-5	microfibrillar associated protein 5	protein-coding	0.010000	0.482587	
mm_110466.1	chr12	51829219	51829419	-	1	NA	NA	NA	217	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.110000	0.721393	
mm_126148.1	chr15	78349206	78349406	+	1	NA	NA	NA	707	NR_106138	102466845		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0.005000	0.582090	
mm_38774.1	chr4	148001969	148002169	-	1	NA	NA	NA	1347	NM_008725	230899	Mm.482123	NM_008725	ENSMUSG00000041616	Nppa	ANP|Anf|Pnd	natriuretic peptide type A	protein-coding	0.010000	0.492537	
mm_73696.1	chr8	111643338	111643538	+	1	NA	NA	NA	-5	NM_001037665	22640	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0.080000	0.582090	
mm_78351.1	chr9	25481457	25481657	+	1	NA	NA	NA	-40	NM_026189	67484	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.140000	0.761194	
mm_8366.1	chr1	150502601	150502801	-	1	NA	NA	NA	-36536	NM_001110146	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.005000	0.407960	
mm_34325.1	chr4	141873123	141873323	+	1	NA	NA	NA	1697	NM_025994	27984	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	0.025000	0.621891	
mm_116586.1	chr13	47106128	47106328	-	1	NA	NA	NA	-7	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.160000	0.726368	
mm_145762.1	chr18	64908577	64908777	+	1	NA	NA	NA	20921	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.025000	0.368159	27(GCTTTAAAAATC,+,0.00)
mm_65424.1	chr7	25297508	25297708	-	1	NA	NA	NA	347	NM_008776	18476	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	0.125000	0.681592	
mm_35370.1	chr4	32950740	32950940	-	1	NA	NA	NA	-14	NM_001012451	140577	Mm.214766	NM_080471	ENSMUSG00000040183	Ankrd6	-	ankyrin repeat domain 6	protein-coding	0.150000	0.796020	
mm_66557.1	chr7	45238641	45238841	-	1	NA	NA	NA	98	NM_007645	12493	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0.025000	0.517413	
mm_126.1	chr1	9848287	9848487	+	1	NA	NA	NA	106	NM_001037759	170755	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.110000	0.711443	
mm_129848.1	chr15	83166776	83166976	-	1	NA	NA	NA	5332	NM_029787	109754	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.010000	0.582090	
mm_103570.1	chr11	77893749	77893949	-	1	NA	NA	NA	23	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding	0.005000	0.547264	
mm_51113.1	chr6	67609614	67609814	+	1	NA	NA	NA	-44015	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.005000	0.452736	
mm_67601.1	chr7	83735410	83735610	-	1	NA	NA	NA	-20	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.005000	0.557214	
mm_67284.1	chr7	78627359	78627559	-	1	NA	NA	NA	-49621	NM_182809	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	0.015000	0.432836	
mm_20644.1	chr2	132029696	132029896	-	1	NA	NA	NA	192	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.110000	0.726368	
mm_28833.1	chr3	96557569	96557769	-	1	NA	NA	NA	-288	NM_001009935	56338	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.040000	0.592040	
mm_23602.1	chr3	65109379	65109579	+	1	NA	NA	NA	111	NM_010597	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.030000	0.582090	
mm_70557.1	chr8	13068594	13068794	+	1	NA	NA	NA	7786	NM_025834	66901	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.015000	0.373134	
mm_17022.1	chr2	19048267	19048467	-	1	NA	NA	NA	50048	NR_024323	74629	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0.000000	0.462687	
mm_128158.1	chr15	32767368	32767568	-	1	NA	NA	NA	-153255	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0.010000	0.383085	
mm_147049.1	chr18	34931858	34932058	-	1	NA	NA	NA	45	NM_144866	225363	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.120000	0.736318	
mm_4514.1	chr1	174330420	174330620	+	1	NA	NA	NA	2	NM_025470	66289	Mm.7150	NM_025470	ENSMUSG00000026531	Mptx1	1810030J14Rik|AV054416|Mptx	mucosal pentraxin 1	protein-coding	0.000000	0.398010	
mm_173289.1	chrY	2073208	2073408	-	1	NA	NA	NA	97101	NM_009571	22768	Mm.411381	NM_009571	ENSMUSG00000000103	Zfy2	Zfy-2	zinc finger protein 2, Y-linked	protein-coding	0.020000	0.482587	
mm_65543.1	chr7	27121838	27122038	-	1	NA	NA	NA	1983	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.035000	0.577114	
mm_157706.1	chrX	64152006	64152206	-	1	NA	NA	NA	92	NM_001177377	627470	Mm.233605	NM_001177377	ENSMUSG00000079579	Gm6760	EG627470	predicted gene 6760	protein-coding	0.000000	0.467662	-35(AGGTATATAAGG,-,0.00)
mm_48994.1	chr6	4756438	4756638	+	1	NA	NA	NA	9232	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.015000	0.507463	
mm_162393.1	chr1	79334932	79335132	+	1	NA	NA	NA	105058	NM_009129	20254	Mm.5038	NM_009129	ENSMUSG00000050711	Scg2	Chgc|SgII	secretogranin II	protein-coding	0.005000	0.417910	-73(GCTCCTAAAAGC,-,0.00),51(GGTTCTATAAGG,-,0.00)
mm_138350.1	chr17	34956334	34956534	+	1	NA	NA	NA	2804	NM_010478	15511	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	0.000000	0.293532	
mm_55379.1	chr6	58906934	58907134	-	1	NA	NA	NA	92	NM_021432	58243	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.080000	0.641791	
mm_151640.1	chr19	4036626	4036826	-	1	NA	NA	NA	1186	NM_013541	14870	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	0.030000	0.537313	
mm_123203.1	chr14	59324062	59324262	-	1	NA	NA	NA	17168	NM_001164327	236451	Mm.247736	NM_001164327	ENSMUSG00000091649	Phf11b	EG236451|Gm4902	PHD finger protein 11B	protein-coding	0.005000	0.447761	
mm_109726.1	chr12	116281193	116281393	+	1	NA	NA	NA	71	NM_028731	52635	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	0.125000	0.761194	
mm_82165.1	chr9	123806377	123806577	+	1	NA	NA	NA	0	NM_030712	80901	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.010000	0.477612	
mm_122556.1	chr14	49066294	49066494	-	1	NA	NA	NA	-101	NM_144535	74385	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	0.160000	0.746269	
mm_160080.1	chr7	13054525	13054725	-	1	NA	NA	NA	139	NM_001290452	109889	Mm.10103	NM_145819	ENSMUSG00000030380	Mzf1	Mzf-2|Mzf2|Zfp121|Zfp98|Znf42	myeloid zinc finger 1	protein-coding	0.060000	0.542289	
mm_9002.1	chr1	165789972	165790172	-	1	NA	NA	NA	1391	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.010000	0.547264	
mm_105154.1	chr11	101466043	101466243	-	1	NA	NA	NA	56	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.110000	0.716418	
mm_150464.1	chr19	38395682	38395882	+	1	NA	NA	NA	-198	NM_175507	240660	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	0.030000	0.606965	
mm_112810.1	chr13	20794118	20794318	+	1	NA	NA	NA	105	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.492537	
mm_150450.1	chr19	38116656	38116856	+	1	NA	NA	NA	8055	NM_011255	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.010000	0.417910	
mm_47349.1	chr5	122560741	122560941	-	1	NA	NA	NA	53677	NM_009879	12589	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	0.030000	0.447761	
mm_90936.1	chr10	12915386	12915586	-	1	NA	NA	NA	7641	NR_038027	320273	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	0.025000	0.577114	
mm_48039.1	chr5	136318330	136318530	-	1	NA	NA	NA	57373	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	0.005000	0.487562	
mm_36927.1	chr4	108296457	108296657	-	1	NA	NA	NA	4533	NM_001033634	414872	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	0.015000	0.477612	
mm_139264.1	chr17	47768861	47769061	+	1	NA	NA	NA	-16783	NM_011549	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.025000	0.542289	
mm_36990.1	chr4	109977775	109977975	-	1	NA	NA	NA	-150	NM_172296	242620	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0.090000	0.641791	
mm_70133.1	chr7	143242363	143242563	-	1	NA	NA	NA	54084	NR_001461	63830	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.000000	0.308458	
mm_168530.1	chr1	161035370	161035570	+	1	NA	NA	NA	304	NR_002840	14455	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	0.055000	0.512438	
mm_55543.1	chr6	70918805	70919005	-	1	NA	NA	NA	17	NM_028825	74221	Mm.273326	NM_028825	ENSMUSG00000051896	Tex37	1700011F03Rik	testis expressed 37	protein-coding	0.005000	0.477612	
mm_17867.1	chr2	34870851	34871051	-	1	NA	NA	NA	11	NM_080554	66998	Mm.270632	NM_080554	ENSMUSG00000026869	Psmd5	1500032A03Rik|AW475925|S5b|W91691|mKIAA0072	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	protein-coding	0.105000	0.656716	
mm_141169.1	chr17	26532617	26532817	-	1	NA	NA	NA	-24245	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.005000	0.457711	
mm_124397.1	chr14	112919003	112919203	-	1	NA	NA	NA	897673	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA	0.005000	0.238806	
mm_83282.1	chr9	43105890	43106090	-	1	NA	NA	NA	-272	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0.175000	0.810945	
mm_26908.1	chr3	19628577	19628777	-	1	NA	NA	NA	-15783	NM_001081281	381485	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0.120000	0.621891	
mm_279.1	chr1	21256652	21256852	+	1	NA	NA	NA	16167	NM_010356	14859	Mm.394593	NM_010356	ENSMUSG00000025934	Gsta3	Gst2-3	glutathione S-transferase, alpha 3	protein-coding	0.010000	0.437811	
mm_21697.1	chr2	164512077	164512277	-	1	NA	NA	NA	14652	NM_133779	78928	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	0.010000	0.457711	
mm_141749.1	chr17	34239582	34239782	-	1	NA	NA	NA	777	NM_010389	15002	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	0.015000	0.437811	84(AGCCATAAAAGG,-,0.00)
mm_86938.1	chr10	24590843	24591043	+	1	NA	NA	NA	-4499	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.010000	0.502488	
mm_24184.1	chr3	88593030	88593230	+	1	NA	NA	NA	13459	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.010000	0.547264	
mm_10278.1	chr2	9884392	9884592	+	1	NA	NA	NA	3246	NR_024257	381347	Mm.441450	NR_024257		4930412O13Rik	ENSMUSG00000075535|Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.045000	0.537313	
mm_162124.1	chrX	71962429	71962629	+	1	NA	NA	NA	-96	NM_001303028	208748	Mm.25626	NM_001081135	ENSMUSG00000033361	Prrg3	Gm368	proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)	protein-coding	0.105000	0.736318	
mm_92758.1	chr10	81050897	81051097	-	1	NA	NA	NA	9157	NM_024499	52551	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	0.030000	0.636816	
mm_85525.1	chr9	106464812	106465012	-	1	NA	NA	NA	1028	NM_001159652	436090	Mm.482905	NM_001159652	ENSMUSG00000091735	Gpr62	4933402E03Rik	G protein-coupled receptor 62	protein-coding	0.115000	0.731343	
mm_65272.1	chr7	24208016	24208216	-	1	NA	NA	NA	33	NM_019940	56707	Mm.448367	NM_019940	ENSMUSG00000087598	Zfp111	-	zinc finger protein 111	protein-coding	0.030000	0.552239	
mm_66056.1	chr7	30737887	30738087	-	1	NA	NA	NA	1420	NM_008085	14447	Mm.436562	NM_008085	ENSMUSG00000061099	Gapdhs	Gapd-s|Gapds	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein-coding	0.025000	0.606965	
mm_51515.1	chr6	83137830	83138030	+	1	NA	NA	NA	846	NM_009106	20166	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0.005000	0.567164	
mm_132796.1	chr16	45093914	45094114	+	1	NA	NA	NA	-39	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.020000	0.402985	
mm_39388.1	chr5	13398750	13398950	+	1	NA	NA	NA	-147	NM_001243073	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.035000	0.467662	-14(TCGTTTATATGG,-,0.00),-12(GTTTATATGGGC,+,0.00)
mm_145064.1	chr18	40530660	40530860	+	1	NA	NA	NA	272399	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.035000	0.582090	
mm_52796.1	chr6	121300189	121300389	+	1	NA	NA	NA	-7	NM_144512	14412	Mm.258596	NM_144512	ENSMUSG00000030108	Slc6a13	GAT3|Gabt3|Gat2	solute carrier family 6 (neurotransmitter transporter, GABA), member 13	protein-coding	0.030000	0.532338	-35(CGCTTTAAATAG,-,0.00),-33(CTTTAAATAGCC,+,0.00)
mm_56764.1	chr6	116133771	116133971	-	1	NA	NA	NA	59503	NM_177412	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.010000	0.522388	
mm_35015.1	chr4	3575034	3575234	-	1	NA	NA	NA	255	NM_054089	116940	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	0.045000	0.532338	
mm_11114.1	chr2	28193164	28193364	+	1	NA	NA	NA	171	NM_001038614	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.130000	0.766169	
mm_123858.1	chr14	70994527	70994727	-	1	NA	NA	NA	104520	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.010000	0.522388	
mm_173178.1	chrX	5329835	5330035	-	1	NA	NA	NA	139330	NM_010850	17870	Mm.368515	NM_010850	ENSMUSG00000044597	Mycs	-	myc-like oncogene, s-myc protein	protein-coding	0.020000	0.487562	
mm_90011.1	chr10	115269848	115270048	+	1	NA	NA	NA	-18455	NM_025706	66687	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0.025000	0.472637	
mm_64756.1	chr7	4844582	4844782	-	1	NA	NA	NA	14	NM_001290291	232813	Mm.44666	NM_172737	ENSMUSG00000053550	Shisa7	ckamp59	shisa family member 7	protein-coding	0.095000	0.711443	
mm_4060.1	chr1	165856082	165856282	+	1	NA	NA	NA	67501	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.020000	0.557214	
mm_2114.1	chr1	87865004	87865204	+	1	NA	NA	NA	-10805	NR_136921	100503175	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.000000	0.363184	
mm_46315.1	chr5	100595146	100595346	-	1	NA	NA	NA	-23041	NM_139198	231507	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.005000	0.472637	
mm_15934.1	chr2	165596072	165596272	+	1	NA	NA	NA	1144	NM_001271963	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	0.040000	0.398010	
mm_89258.1	chr10	87859236	87859436	+	1	NA	NA	NA	284	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.010000	0.388060	
mm_139476.1	chr17	56005592	56005792	+	1	NA	NA	NA	-86	NR_102313	106766	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	0.020000	0.537313	
mm_115992.1	chr13	24375928	24376128	-	1	NA	NA	NA	-39094	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.010000	0.492537	
mm_163603.1	chr13	46968381	46968581	+	1	NA	NA	NA	-38763	NM_010617	16553	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	0.010000	0.457711	
mm_63166.1	chr7	124018051	124018251	+	1	NA	NA	NA	34970	NM_001252072	628779	Mm.40210	NM_001252072	ENSMUSG00000078591	Hs3st4	EG628779|Gm6915	heparan sulfate (glucosamine) 3-O-sulfotransferase 4	protein-coding	0.000000	0.412935	
mm_27073.1	chr3	28765278	28765478	-	1	NA	NA	NA	-15933	NM_177586	208691	Mm.193670	NM_177586	ENSMUSG00000050192	Eif5a2	9630038B20|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding	0.075000	0.537313	
mm_50081.1	chr6	41521690	41521890	+	1	NA	NA	NA	14	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.000000	0.452736	
mm_13667.1	chr2	114294394	114294594	+	1	NA	NA	NA	-93062	NM_175466	228491	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	0.000000	0.303483	-37(CTCCCTAAAAGA,-,0.00)
mm_46279.1	chr5	100039756	100039956	-	1	NA	NA	NA	-138	NM_026421	67870	Mm.11311	NM_026421	ENSMUSG00000029326	Enoph1	2310057D15Rik|BB183658|C81437	enolase-phosphatase 1	protein-coding	0.115000	0.706468	
mm_93153.1	chr10	93081521	93081721	-	1	NA	NA	NA	-25	NM_001347060	380654	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	0.050000	0.597015	
mm_79076.1	chr9	46242012	46242212	+	1	NA	NA	NA	1268	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.005000	0.497512	
mm_9815.1	chr1	182020037	182020237	-	1	NA	NA	NA	-157	NM_010135	13800	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	enabled homolog (Drosophila)	protein-coding	0.160000	0.825871	
mm_94650.1	chr11	17051539	17051739	+	1	NA	NA	NA	-295	NM_029861	380686	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	0.005000	0.472637	
mm_28152.1	chr3	87748444	87748644	-	1	NA	NA	NA	79	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding	0.040000	0.621891	
mm_78925.1	chr9	45055081	45055281	+	1	NA	NA	NA	0	NM_001093749	319742	Mm.49611	NM_176993	ENSMUSG00000070305	Mpzl3	5430427F17Rik|A530065I17Rik|rc	myelin protein zero-like 3	protein-coding	0.060000	0.572139	
mm_59620.1	chr7	28152823	28153023	+	1	NA	NA	NA	-16825	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.020000	0.542289	
mm_171992.1	chr5	97526075	97526275	-	1	NA	NA	NA	-69167	NM_010294	14626	Mm.61206	NM_010294	ENSMUSG00000050553	Gk2	GKTA|Gk-rs2	glycerol kinase 2	protein-coding	0.035000	0.512438	
mm_112356.1	chr12	118924479	118924679	-	1	NA	NA	NA	41842	NM_029961	77706	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0.005000	0.482587	
mm_165401.1	chr2	136552816	136553016	+	1	NA	NA	NA	20595	NM_175667	319196	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0.005000	0.537313	-1(CATTATAAAGGG,-,0.00)
mm_40714.1	chr5	65934798	65934998	+	1	NA	NA	NA	-32226	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.010000	0.472637	
mm_22006.1	chr2	167772948	167773148	-	1	NA	NA	NA	81871	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.010000	0.477612	
mm_103390.1	chr11	75416285	75416485	-	1	NA	NA	NA	6238	NM_011340	20317	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.040000	0.606965	
mm_117596.1	chr13	89742460	89742660	-	1	NA	NA	NA	-48	NM_001134475	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.050000	0.616915	
mm_118528.1	chr14	15110349	15110549	+	1	NA	NA	NA	289634	NM_001195229	674895	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.005000	0.427861	
mm_24302.1	chr3	89389232	89389432	+	1	NA	NA	NA	-2532	NR_040403	545539	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	ENSMUSG00000074466|OTTMUSG00000021274	predicted gene 15417	ncRNA	0.015000	0.557214	
mm_67702.1	chr7	89527068	89527268	-	1	NA	NA	NA	-9582	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.015000	0.502488	
mm_34602.1	chr4	150237125	150237325	+	1	NA	NA	NA	28	NM_023119	13806	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	0.080000	0.646766	
mm_104051.1	chr11	86358123	86358323	-	1	NA	NA	NA	-698	NM_001080931	327987	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0.075000	0.621891	-64(CGCCATTAAAGC,-,0.00)
mm_166775.1	chr6	136808262	136808462	+	1	NA	NA	NA	114	NM_177688	232440	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	0.155000	0.726368	
mm_76605.1	chr8	90816904	90817104	-	1	NA	NA	NA	-11831	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.015000	0.522388	
mm_70545.1	chr8	13055578	13055778	+	1	NA	NA	NA	-5230	NM_025834	66901	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.025000	0.542289	
mm_60108.1	chr7	35448943	35449143	+	1	NA	NA	NA	-49	NM_001199015	30962	Mm.45874	NM_021291	ENSMUSG00000030492	Slc7a9	CSNU3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	protein-coding	0.025000	0.522388	
mm_12927.1	chr2	85037621	85037821	+	1	NA	NA	NA	270	NM_001136081	20833	Mm.219793	NM_182990	ENSMUSG00000027067	Ssrp1	C81323|Hmg1-rs1|Hmgi-rs3|Hmgox|T160	structure specific recognition protein 1	protein-coding	0.025000	0.547264	
mm_90944.1	chr10	12964357	12964557	-	1	NA	NA	NA	-198	NM_001163591	74732	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.085000	0.646766	
mm_82319.1	chr9	7994717	7994917	-	1	NA	NA	NA	9779	NM_001171147	22601	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	0.015000	0.343284	
mm_100648.1	chr11	3123813	3124013	-	1	NA	NA	NA	-108	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.055000	0.601990	
mm_96789.1	chr11	69965634	69965834	+	1	NA	NA	NA	313	NM_016887	53624	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	0.060000	0.492537	
mm_37615.1	chr4	126968089	126968289	-	1	NA	NA	NA	-266	NM_001114399	67785	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0.065000	0.631841	
mm_168687.1	chr11	96075545	96075745	-	1	NA	NA	NA	-14	NM_001161419	11951	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	0.035000	0.606965	
mm_157401.1	chrX	38424251	38424451	-	1	NA	NA	NA	32109	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.005000	0.407960	
mm_104196.1	chr11	87980340	87980540	-	1	NA	NA	NA	6145	NM_001168472	68097	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	0.005000	0.512438	16(GCTTTTATGTTC,+,0.00)
mm_96266.1	chr11	62648735	62648935	+	1	NA	NA	NA	171	NM_175002	216829	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	0.075000	0.666667	
mm_93209.1	chr10	94944103	94944303	-	1	NA	NA	NA	375	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.110000	0.741294	
mm_59451.1	chr7	27133481	27133681	+	1	NA	NA	NA	13626	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.025000	0.417910	
mm_169929.1	chr16	57391492	57391692	-	1	NA	NA	NA	38315	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.140000	0.731343	
mm_16116.1	chr2	169725952	169726152	+	1	NA	NA	NA	92406	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.015000	0.348259	-75(GTCCATAAATGA,-,0.00)
mm_38516.1	chr4	141415884	141416084	-	1	NA	NA	NA	4	NM_019701	56365	Mm.24882	NM_019701	ENSMUSG00000006216	Clcnkb	CLCKB|Clc-Ka|Clck2|Clcnk1l	chloride channel, voltage-sensitive Kb	protein-coding	0.015000	0.611940	
mm_137607.1	chr17	28232656	28232856	+	1	NA	NA	NA	2	NM_011145	19015	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.115000	0.731343	
mm_131931.1	chr16	23609976	23610176	+	1	NA	NA	NA	157	NM_023386	67775	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.010000	0.562189	
mm_74326.1	chr8	126869533	126869733	+	1	NA	NA	NA	76288	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.000000	0.482587	
mm_85939.1	chr9	112099142	112099342	-	1	NA	NA	NA	19469	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.000000	0.383085	
mm_171943.1	chr5	7085895	7086095	+	1	NA	NA	NA	-218169	NM_027603	70920	Mm.158494	NM_027603	ENSMUSG00000040514	4921511H03Rik	-	RIKEN cDNA 4921511H03 gene	protein-coding	0.060000	0.641791	
mm_143234.1	chr17	63499619	63499819	-	1	NA	NA	NA	861	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.200000	0.830846	
mm_118013.1	chr13	100744009	100744209	-	1	NA	NA	NA	550	NM_001190264	66128	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	0.045000	0.562189	
mm_124788.1	chr15	8109202	8109402	+	1	NA	NA	NA	-11	NM_133227	170762	Mm.295168	NM_133227	ENSMUSG00000022142	Nup155	D930027M19Rik|mKIAA0791	nucleoporin 155	protein-coding	0.100000	0.587065	
mm_101456.1	chr11	30253318	30253518	-	1	NA	NA	NA	-33646	NM_175836	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.005000	0.358209	
mm_14928.1	chr2	151540679	151540879	+	1	NA	NA	NA	-1704	NR_126058	14225	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.000000	0.383085	11(GCTTTTAAGCCT,+,0.00)
mm_88407.1	chr10	76723400	76723600	+	1	NA	NA	NA	2544	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.080000	0.587065	
mm_67033.1	chr7	66689496	66689696	-	1	NA	NA	NA	-35	NR_003961	117589	Mm.34785	NM_080443	ENSMUSG00000030509	Asb7	AI449039|Asb-7|D030055C23Rik	ankyrin repeat and SOCS box-containing 7	protein-coding	0.045000	0.636816	
mm_170193.1	chr17	6601693	6601893	+	1	NA	NA	NA	14	NM_001166630	100040563	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	0.105000	0.661692	
mm_98258.1	chr11	88851522	88851722	+	1	NA	NA	NA	18	NR_126433	75285	Mm.402023	NR_126433	ENSMUSG00000092399	4930556N13Rik	-	RIKEN cDNA 4930556N13 gene	ncRNA	0.010000	0.537313	
mm_135727.1	chr16	55822441	55822641	-	1	NA	NA	NA	-403	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.085000	0.681592	
mm_25525.1	chr3	114827550	114827750	+	1	NA	NA	NA	-35603	NR_030469	735255		NR_030469	ENSMUSG00000076126	Mir669b	Mirn669b	microRNA 669b	ncRNA	0.005000	0.318408	37(TTCTATAAAAGT,-,0.00)
mm_112587.1	chr13	13783943	13784143	+	1	NA	NA	NA	-16	NM_001302997	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0.065000	0.626866	
mm_84153.1	chr9	59486499	59486699	-	1	NA	NA	NA	-225	NM_019927	23806	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	0.150000	0.751244	
mm_18837.1	chr2	74753376	74753576	-	1	NA	NA	NA	792	NR_110447	102634401	Mm.235021	NR_110447	ENSMUSG00000085015	LOC102634401	-	uncharacterized LOC102634401	ncRNA	0.050000	0.562189	
mm_151351.1	chr19	55897859	55898059	+	1	NA	NA	NA	2638	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.005000	0.512438	
mm_107219.1	chr12	26469285	26469485	+	1	NA	NA	NA	170	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.105000	0.696517	
mm_67091.1	chr7	68749102	68749302	-	1	NA	NA	NA	36	NM_001042592	66412	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.085000	0.691542	
mm_149551.1	chr19	12599948	12600148	+	1	NA	NA	NA	32	NM_001013762	240549	Mm.302458	NM_001013762	ENSMUSG00000071633	Gm4952	EG240549	predicted gene 4952	protein-coding	0.010000	0.512438	
mm_172378.1	chr7	13024938	13025138	+	1	NA	NA	NA	886	NM_011588	21849	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	0.105000	0.711443	
mm_16750.1	chr2	9857477	9857677	-	1	NA	NA	NA	21023	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.000000	0.308458	
mm_165528.1	chr2	178414825	178415025	-	1	NA	NA	NA	391	NM_001081289	71532	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	0.020000	0.646766	
mm_11286.1	chr2	30066616	30066816	+	1	NA	NA	NA	242	NM_001204875	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.135000	0.800995	
mm_170387.1	chr18	60382605	60382805	+	1	NA	NA	NA	6676	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.467662	
mm_73245.1	chr8	104250849	104251049	+	1	NA	NA	NA	88	NM_001286383	75458	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	0.105000	0.676617	
mm_34021.1	chr4	138019682	138019882	+	1	NA	NA	NA	26326	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.020000	0.432836	-93(GTTTATATAAAG,-,0.00)
mm_151619.1	chr19	3905087	3905287	-	1	NA	NA	NA	43	NM_016921	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.000000	0.552239	
mm_57488.1	chr6	125266367	125266567	-	1	NA	NA	NA	942	NR_015527	73870	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.030000	0.482587	
mm_115413.1	chr13	114839191	114839391	+	1	NA	NA	NA	21054	NM_001113374	17434	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.005000	0.512438	
mm_131982.1	chr16	25026403	25026603	+	1	NA	NA	NA	-33136	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.005000	0.442786	-34(TCATTTATAGCC,+,0.00)
mm_31983.1	chr4	89124155	89124355	+	1	NA	NA	NA	-13115	NM_024433	66902	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	0.025000	0.452736	
mm_132018.1	chr16	26251891	26252091	+	1	NA	NA	NA	119848	NM_016674	12737	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding	0.010000	0.427861	69(GGCTTTAAAAAA,-,0.00)
mm_6775.1	chr1	84134115	84134315	-	1	NA	NA	NA	84746	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.437811	
mm_79860.1	chr9	65032340	65032540	+	1	NA	NA	NA	-18	NM_028906	74388	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	0.110000	0.706468	30(GCTTTTAAGTCC,+,0.00)
mm_168601.1	chr1	174609650	174609850	+	1	NA	NA	NA	107925	NM_019445	54418	Mm.330620	NM_019445	ENSMUSG00000028354	Fmn2	AU024104	formin 2	protein-coding	0.005000	0.597015	
mm_130934.1	chr15	103199530	103199730	-	1	NA	NA	NA	15722	NM_007626	12419	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0.040000	0.457711	
mm_31340.1	chr4	46471297	46471497	+	1	NA	NA	NA	-17932	NM_053179	94181	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.005000	0.427861	
mm_75235.1	chr8	39629425	39629625	-	1	NA	NA	NA	13153	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.005000	0.338308	
mm_159329.1	chr3	37008315	37008515	+	1	NA	NA	NA	-55241	NM_009350	21744	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	0.000000	0.402985	
mm_45824.1	chr5	87694435	87694635	-	1	NA	NA	NA	4890	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.010000	0.452736	
mm_89403.1	chr10	90576636	90576836	+	1	NA	NA	NA	45	NM_181398	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.030000	0.532338	
mm_3910.1	chr1	161896295	161896495	+	1	NA	NA	NA	-19734	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.035000	0.502488	
mm_14489.1	chr2	131909865	131910065	+	1	NA	NA	NA	37	NM_001278256	19122	Mm.648	NM_011170	ENSMUSG00000079037	Prnp	AA960666|AI325101|CD230|PrP|PrP<C>|PrPC|PrPSc|Prn-i|Prn-p|Sinc|prP27-30|prP33-35C	prion protein	protein-coding	0.110000	0.701493	
mm_29191.1	chr3	106684797	106684997	-	1	NA	NA	NA	-90	NM_001039478	321000	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	0.045000	0.547264	
mm_9580.1	chr1	174028205	174028405	-	1	NA	NA	NA	3450	NM_172648	226695	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	0.015000	0.338308	
mm_126554.1	chr15	82147157	82147357	+	1	NA	NA	NA	-12	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.115000	0.731343	
mm_132136.1	chr16	31926934	31927134	+	1	NA	NA	NA	-6817	NM_172822	239827	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.020000	0.422886	-39(GCCCCTAAAAAG,-,0.00)
mm_88942.1	chr10	81319608	81319808	+	1	NA	NA	NA	-1395	NM_027381	70312	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.035000	0.522388	
mm_163833.1	chr14	19417639	19417839	-	1	NA	NA	NA	184848	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.035000	0.383085	
mm_155795.1	chrX	98937672	98937872	+	1	NA	NA	NA	-9	NM_207633	77929	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	0.050000	0.592040	
mm_127001.1	chr15	95790809	95791009	+	1	NA	NA	NA	66	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.110000	0.706468	
mm_106201.1	chr11	116843098	116843298	-	1	NA	NA	NA	251	NM_033398	107817	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	0.140000	0.696517	
mm_12955.1	chr2	90189826	90190026	+	1	NA	NA	NA	34545	NM_001270423	100042690	Mm.271314	NM_001270423	ENSMUSG00000089859	Gm13769	Gm13766|OTTMUSG00000014164|OTTMUSG00000014278	predicted gene 13769	protein-coding	0.000000	0.258706	
mm_79346.1	chr9	53536989	53537189	+	1	NA	NA	NA	42	NM_001081152	244879	Mm.116713	NM_001081152	ENSMUSG00000033054	Npat	6820401K01|AI427561|BB112559	nuclear protein in the AT region	protein-coding	0.090000	0.621891	
mm_30519.1	chr3	158561290	158561490	-	1	NA	NA	NA	831	NM_001291453	242274	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding	0.100000	0.731343	
mm_150742.1	chr19	43782245	43782445	+	1	NA	NA	NA	37	NM_013806	12780	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0.015000	0.432836	
mm_157446.1	chrX	41823431	41823631	-	1	NA	NA	NA	88370	NM_001033422	331401	Mm.259498	NM_001033422	ENSMUSG00000037475	Thoc2	6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2	THO complex 2	protein-coding	0.015000	0.328358	
mm_73155.1	chr8	94994698	94994898	+	1	NA	NA	NA	10399	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.000000	0.512438	
mm_168627.1	chr1	180894493	180894693	+	1	NA	NA	NA	1485	NM_177099	320202	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0.070000	0.651741	
mm_81181.1	chr9	107399765	107399965	+	1	NA	NA	NA	-15	NM_001174049	56808	Mm.273084	NM_020263	ENSMUSG00000010066	Cacna2d2	Cacna2d|a2d2|du|mKIAA0558|td|torpid	calcium channel, voltage-dependent, alpha 2/delta subunit 2	protein-coding	0.120000	0.746269	
mm_120426.1	chr14	65666305	65666505	+	1	NA	NA	NA	2	NM_001168318	71145	Mm.83840	NM_028903	ENSMUSG00000022032	Scara5	4932433F15Rik|4933425F03Rik|AV278087|Tesr	scavenger receptor class A, member 5	protein-coding	0.030000	0.502488	
mm_60280.1	chr7	43958684	43958884	+	1	NA	NA	NA	-7967	NM_010645	16623	Mm.447819	NM_010645	ENSMUSG00000063133	Klk1b1	Klk1|mGK-1|mK1	kallikrein 1-related peptidase b1	protein-coding	0.005000	0.562189	
mm_83165.1	chr9	40489633	40489833	-	1	NA	NA	NA	-33969	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.020000	0.512438	
mm_141475.1	chr17	31074601	31074801	-	1	NA	NA	NA	17007	NM_009593	11307	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding	0.005000	0.457711	
mm_28346.1	chr3	89418202	89418402	-	1	NA	NA	NA	-11	NM_016904	54124	Mm.3049	NM_016904	ENSMUSG00000028044	Cks1b	2410005G18Rik|2610005D03Rik|AA407784|Cks1|sid1334	CDC28 protein kinase 1b	protein-coding	0.075000	0.606965	
mm_56212.1	chr6	89348492	89348692	-	1	NA	NA	NA	14021	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.025000	0.656716	
mm_38328.1	chr4	137388051	137388251	-	1	NA	NA	NA	21640	NM_001126318	242711	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011|OTTMUSG00000009877	chymotrypsin-like elastase family, member 3A	protein-coding	0.050000	0.611940	
mm_87213.1	chr10	39801261	39801461	+	1	NA	NA	NA	69201	NM_011264	19714	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	0.010000	0.368159	18(ATTTTTAAAAGG,-,0.00)
mm_165666.1	chr3	88553622	88553822	+	1	NA	NA	NA	6	NM_033526	94232	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	0.115000	0.815920	
mm_161342.1	chr14	52142614	52142814	+	1	NA	NA	NA	31811	NM_023879	77945	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	0.000000	0.452736	
mm_71966.1	chr8	70531432	70531632	+	1	NA	NA	NA	3686	NM_001199631	14232	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|Fkbp38	FK506 binding protein 8	protein-coding	0.030000	0.651741	
mm_83341.1	chr9	44288042	44288242	-	1	NA	NA	NA	102	NM_138955	192663	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP-binding cassette, sub-family G (WHITE), member 4	protein-coding	0.090000	0.706468	
mm_123967.1	chr14	75130496	75130696	-	1	NA	NA	NA	287	NM_027581	70859	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	0.070000	0.587065	
mm_46511.1	chr5	105138528	105138728	-	1	NA	NA	NA	924	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.393035	
mm_119499.1	chr14	47380089	47380289	+	1	NA	NA	NA	6329	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.010000	0.671642	
mm_148063.1	chr18	72233527	72233727	-	1	NA	NA	NA	117442	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.005000	0.303483	
mm_5063.1	chr1	194995415	194995615	+	1	NA	NA	NA	-18556	NR_033564	320400	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.010000	0.457711	
mm_110631.1	chr12	57543256	57543456	-	1	NA	NA	NA	2765	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.045000	0.606965	
mm_4010.1	chr1	165236401	165236601	+	1	NA	NA	NA	457	NM_145513	226591	Mm.21520	NM_145513	ENSMUSG00000040843	Tiprl	1810011K17Rik	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	protein-coding	0.065000	0.552239	
mm_99064.1	chr11	99155218	99155418	+	1	NA	NA	NA	-241	NM_007719	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.010000	0.512438	
mm_116063.1	chr13	27562447	27562647	-	1	NA	NA	NA	2059	NM_001316721	67310	Mm.46091	NM_023332	ENSMUSG00000006490	Prl8a9	1600019F10Rik|Ghd15|PLP-C2|PLP-Cbeta|Prlpc2	prolactin family8, subfamily a, member 9	protein-coding	0.010000	0.467662	-71(CTTTTTATGGTT,+,0.00)
mm_164840.1	chr18	42173220	42173420	+	1	NA	NA	NA	23389	NM_027072	69401	Mm.34841	NM_027072	ENSMUSG00000059455	Plac8l1	1700009N18Rik|1700015M15Rik	PLAC8-like 1	protein-coding	0.010000	0.457711	-32(CCTTTAAAATTC,+,0.00)
mm_33591.1	chr4	132563628	132563828	+	1	NA	NA	NA	-339	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.010000	0.537313	
mm_123017.1	chr14	55116078	55116278	-	1	NA	NA	NA	757	NM_177049	319984	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.020000	0.572139	
mm_116729.1	chr13	51728991	51729191	-	1	NA	NA	NA	64656	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.010000	0.373134	
mm_76433.1	chr8	84980965	84981165	-	1	NA	NA	NA	-2317	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.010000	0.532338	
mm_66685.1	chr7	45824628	45824828	-	1	NA	NA	NA	19	NM_145963	211480	Mm.68170	NM_145963	ENSMUSG00000058743	Kcnj14	A930026G01Rik|IRK4|Kir2.4	potassium inwardly-rectifying channel, subfamily J, member 14	protein-coding	0.025000	0.686567	
mm_15165.1	chr2	154011315	154011515	+	1	NA	NA	NA	3139	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.010000	0.442786	-8(CTCCATTAAAAC,-,0.00)
mm_80385.1	chr9	75468472	75468672	+	1	NA	NA	NA	27048	NM_001039522	235497	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0.035000	0.616915	
mm_99434.1	chr11	102432468	102432668	+	1	NA	NA	NA	2246	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.010000	0.542289	
mm_88269.1	chr10	74966991	74967191	+	1	NA	NA	NA	-140	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	0.145000	0.716418	
mm_49635.1	chr6	30804895	30805095	+	1	NA	NA	NA	63696	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.567164	
mm_136481.1	chr16	96017702	96017902	-	1	NA	NA	NA	-26899	NM_019537	56088	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	0.005000	0.363184	-4(TCTTTAAAACCA,+,0.00)
mm_102860.1	chr11	69399504	69399704	-	1	NA	NA	NA	-1370	NM_025915	67020	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.050000	0.502488	
mm_47810.1	chr5	133790748	133790948	-	1	NA	NA	NA	-308900	NM_030719	80909	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding	0.015000	0.422886	
mm_122141.1	chr14	31182673	31182873	-	1	NA	NA	NA	-14132	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.010000	0.502488	
mm_125566.1	chr15	59275286	59275486	+	1	NA	NA	NA	-31562	NR_045613	100416830	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0.005000	0.492537	
mm_11222.1	chr2	29761509	29761709	+	1	NA	NA	NA	81	NM_001177392	433416	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	OTTMUSG00000012686	predicted gene 13547	protein-coding	0.030000	0.557214	
mm_104453.1	chr11	95041187	95041387	-	1	NA	NA	NA	84	NM_133667	18604	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	0.100000	0.701493	
mm_4134.1	chr1	170644354	170644554	+	1	NA	NA	NA	-78	NM_177068	320078	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.095000	0.726368	
mm_67162.1	chr7	73543541	73543741	-	1	NA	NA	NA	-1895	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.000000	0.442786	
mm_20522.1	chr2	130839952	130840152	-	1	NA	NA	NA	93	NM_029432	228602	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	0.120000	0.766169	
mm_47722.1	chr5	130013912	130014112	-	1	NA	NA	NA	10319	NM_133768	109900	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik	argininosuccinate lyase	protein-coding	0.010000	0.537313	
mm_147700.1	chr18	60807981	60808181	-	1	NA	NA	NA	-3995	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.035000	0.562189	
mm_134448.1	chr16	18343807	18344007	-	1	NA	NA	NA	25	NM_138583	27883	Mm.265990	NM_138583	ENSMUSG00000013539	Tango2	D16H22S680E|T10	transport and golgi organization 2	protein-coding	0.125000	0.756219	
mm_77120.1	chr8	111281397	111281597	-	1	NA	NA	NA	18725	NM_146218	234736	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	0.030000	0.348259	-7(TTTTTTAAAGCT,+,0.00)
mm_167377.1	chr8	92251156	92251356	-	1	NA	NA	NA	104864	NR_110452	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	0.005000	0.422886	-33(CCATATTAAAGG,-,0.00)
mm_23105.1	chr3	37420165	37420365	+	1	NA	NA	NA	315	NM_021343	57815	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0.135000	0.651741	
mm_12683.1	chr2	75870616	75870816	+	1	NA	NA	NA	38539	NM_172666	228061	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.010000	0.378109	
mm_46264.1	chr5	99729121	99729321	-	1	NA	NA	NA	-161	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.095000	0.771144	
mm_85611.1	chr9	107605213	107605413	-	1	NA	NA	NA	89	NM_009153	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.035000	0.641791	
mm_29488.1	chr3	115714840	115715040	-	1	NA	NA	NA	115	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.045000	0.651741	
mm_157793.1	chrX	73854493	73854693	-	1	NA	NA	NA	26241	NM_008478	16728	Mm.260568	NM_008478	ENSMUSG00000031391	L1cam	CD171|L1|N-CAM-L1|NCAM-L1	L1 cell adhesion molecule	protein-coding	0.005000	0.517413	
mm_73145.1	chr8	94985346	94985546	+	1	NA	NA	NA	1047	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.005000	0.582090	38(GCCTCTAAGGGG,-,0.00),39(CCTCTAAGGGGC,+,0.00)
mm_10988.1	chr2	26294615	26294815	+	1	NA	NA	NA	-158	NM_177841	329366	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding	0.010000	0.522388	
mm_92070.1	chr10	62578361	62578561	-	1	NA	NA	NA	-4	NM_028197	72320	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.115000	0.656716	
mm_125493.1	chr15	55112239	55112439	+	1	NA	NA	NA	22	NM_145470	97998	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	0.080000	0.636816	
mm_84389.1	chr9	65422999	65423199	-	1	NA	NA	NA	-326	NM_178933	330962	Mm.335247	NM_178933	ENSMUSG00000053862	Slc51b	Ostb	solute carrier family 51, beta subunit	protein-coding	0.025000	0.477612	-34(GGCTATAAAAGG,-,0.00)
mm_41749.1	chr5	102845042	102845242	+	1	NA	NA	NA	135	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.015000	0.572139	
mm_39860.1	chr5	30968510	30968710	+	1	NA	NA	NA	-67	NM_053085	69852	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	0.025000	0.616915	
mm_897.1	chr1	53313559	53313759	+	1	NA	NA	NA	35	NR_104360	72085	Mm.482256	NM_028091	ENSMUSG00000026096	Osgepl1	2610001M19Rik|AA416452	O-sialoglycoprotein endopeptidase-like 1	protein-coding	0.070000	0.557214	
mm_5361.1	chr1	25829630	25829830	-	1	NA	NA	NA	-23	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.030000	0.502488	
mm_82968.1	chr9	35777827	35778027	-	1	NA	NA	NA	182	NM_001167673	100312986	Mm.437659	NM_001167673	ENSMUSG00000090738	Gm17727	Pate-e|Pate7	predicted gene, 17727	protein-coding	0.010000	0.398010	
mm_4423.1	chr1	172501867	172502067	+	1	NA	NA	NA	1721	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.015000	0.592040	
mm_96296.1	chr11	63133041	63133241	+	1	NA	NA	NA	338	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.065000	0.676617	
mm_131494.1	chr16	17303178	17303378	+	1	NA	NA	NA	26978	NM_177473	224019	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	0.015000	0.572139	
mm_124361.1	chr14	105177170	105177370	-	1	NA	NA	NA	57	NM_134077	74213	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0.090000	0.611940	
mm_18600.1	chr2	67194616	67194816	-	1	NA	NA	NA	20882	NM_001033477	383709	Mm.244520	NM_001033477		Gm1322	-	predicted gene 1322	protein-coding	0.000000	0.412935	
mm_171950.1	chr5	76959348	76959548	+	1	NA	NA	NA	-7870	NM_172146	231327	Mm.202337	NM_172146	ENSMUSG00000029246	Ppat	5730454C12Rik|AA408689|AA675351|AI507113|C79945	phosphoribosyl pyrophosphate amidotransferase	protein-coding	0.010000	0.457711	
mm_139706.1	chr17	57455778	57455978	+	1	NA	NA	NA	89436	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.010000	0.353234	
mm_75226.1	chr8	39618313	39618513	-	1	NA	NA	NA	24265	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.005000	0.353234	
mm_2874.1	chr1	131797329	131797529	+	1	NA	NA	NA	34	NM_178079	212933	Mm.23844	NM_178079	ENSMUSG00000042251	Pm20d1	4732466D17Rik|AI098026	peptidase M20 domain containing 1	protein-coding	0.040000	0.562189	
mm_122716.1	chr14	52262784	52262984	-	1	NA	NA	NA	-16262	NM_023434	268741	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	0.020000	0.432836	
mm_119874.1	chr14	54686923	54687123	+	1	NA	NA	NA	-92	NM_023190	56215	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	0.050000	0.601990	
mm_120978.1	chr14	78699378	78699578	+	1	NA	NA	NA	25611	NM_001081336	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.015000	0.432836	
mm_45744.1	chr5	86591353	86591553	-	1	NA	NA	NA	40971	NM_178730	243083	Mm.106867	NM_178730	ENSMUSG00000048764	Tmprss11f	4631408C20|4732406D01Rik	transmembrane protease, serine 11f	protein-coding	0.010000	0.457711	
mm_56551.1	chr6	100287355	100287555	-	1	NA	NA	NA	-97	NM_019743	56353	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.185000	0.805970	
mm_47344.1	chr5	122520708	122520908	-	1	NA	NA	NA	-18583	NR_027838	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.035000	0.616915	
mm_84643.1	chr9	71215281	71215481	-	1	NA	NA	NA	5	NR_110518	100041660	Mm.487231	NR_110518		Gm3458	-	predicted gene 3458	ncRNA	0.095000	0.701493	
mm_137345.1	chr17	25145491	25145691	+	1	NA	NA	NA	8960	NM_001317404	26373	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.010000	0.522388	
mm_81718.1	chr9	111439016	111439216	+	1	NA	NA	NA	35	NM_172928	245038	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	0.125000	0.741294	
mm_110884.1	chr12	75221288	75221488	-	1	NA	NA	NA	-44056	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0.005000	0.517413	
mm_79001.1	chr9	45409926	45410126	+	1	NA	NA	NA	3949	NM_007503	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.020000	0.611940	
mm_35003.1	chr4	156215832	156216032	+	1	NA	NA	NA	5	NM_172417	74183	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	0.010000	0.517413	
mm_140567.1	chr17	8565451	8565651	-	1	NA	NA	NA	38750	NM_001290707	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.005000	0.393035	10(GTTTTAATAGTC,+,0.00)
mm_139822.1	chr17	67722266	67722466	+	1	NA	NA	NA	25101	NM_008480	16772	Mm.303386	NM_008480	ENSMUSG00000032796	Lama1	AA408497|Lama	laminin, alpha 1	protein-coding	0.010000	0.407960	
mm_88421.1	chr10	77202082	77202282	+	1	NA	NA	NA	-35652	NM_009929	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.015000	0.552239	
mm_9971.1	chr1	191186375	191186575	-	1	NA	NA	NA	-3142	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.015000	0.507463	
mm_135560.1	chr16	50046189	50046389	-	1	NA	NA	NA	26563	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.045000	0.502488	12(GCATAAATAGAG,+,0.00)
mm_128206.1	chr15	36054756	36054956	-	1	NA	NA	NA	85544	NM_001195748	626596	Mm.321798	NM_001195748	ENSMUSG00000037627	Rgs22	-	regulator of G-protein signalling 22	protein-coding	0.025000	0.482587	
mm_97818.1	chr11	82963211	82963411	+	1	NA	NA	NA	-2630	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.000000	0.462687	
mm_121120.1	chr14	101840428	101840628	+	1	NA	NA	NA	-95	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.025000	0.487562	
mm_79385.1	chr9	54772791	54772991	+	1	NA	NA	NA	8143	NM_013496	12903	Mm.34797	NM_013496	ENSMUSG00000032291	Crabp1	AI326249|CRABP-I|Crabp-1|CrabpI|Rbp-5	cellular retinoic acid binding protein I	protein-coding	0.030000	0.512438	
mm_21005.1	chr2	152343956	152344156	-	1	NA	NA	NA	4	NM_175093	228775	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	0.100000	0.676617	
mm_154112.1	chr19	57134704	57134904	-	1	NA	NA	NA	-15780	NM_001103178	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.030000	0.557214	-20(TCTTATATAGGG,+,0.00)
mm_151857.1	chr19	5796844	5797044	-	1	NA	NA	NA	-963	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.010000	0.452736	
mm_157915.1	chrX	78552703	78552903	-	1	NA	NA	NA	31002	NM_001164275	546336	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	0.000000	0.437811	
mm_84750.1	chr9	75422323	75422523	-	1	NA	NA	NA	12239	NR_040719	71274	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	0.010000	0.502488	
mm_55350.1	chr6	56797674	56797874	-	1	NA	NA	NA	39	NM_145958	210973	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0.135000	0.706468	
mm_93253.1	chr10	95501862	95502062	-	1	NA	NA	NA	-35	NM_026065	67270	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|MRP-L31|PTD007|Rpml31	mitochondrial ribosomal protein L42	protein-coding	0.090000	0.631841	
mm_157880.1	chrX	75842884	75843084	-	1	NA	NA	NA	37	NM_001166454	102866	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	0.025000	0.417910	
mm_26923.1	chr3	20249522	20249722	-	1	NA	NA	NA	-7441	NM_007753	12873	Mm.1135	NM_007753	ENSMUSG00000001865	Cpa3	MC-CPA	carboxypeptidase A3, mast cell	protein-coding	0.010000	0.373134	
mm_143467.1	chr17	71002440	71002640	-	1	NA	NA	NA	-7	NM_026064	67268	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0.090000	0.726368	-13(TGCCCTAAAAGG,-,0.00),-11(CCCTAAAAGGAC,+,0.00)
mm_69974.1	chr7	142377006	142377206	-	1	NA	NA	NA	-3360	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.005000	0.552239	
mm_18760.1	chr2	73453777	73453977	-	1	NA	NA	NA	12	NM_001289722	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.015000	0.492537	
mm_52049.1	chr6	97210643	97210843	+	1	NA	NA	NA	-49	NM_022992	65106	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	0.080000	0.587065	
mm_102377.1	chr11	58801875	58802075	-	1	NA	NA	NA	-15	NM_029283	75429	Mm.296819	NM_029283	ENSMUSG00000049154	Fam183b	3100002J23Rik|Theg6	family with sequence similarity 183, member B	protein-coding	0.030000	0.567164	
mm_34296.1	chr4	141623181	141623381	+	1	NA	NA	NA	553	NM_001013780	384071	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	0.040000	0.621891	-32(AGCTATAAAGGA,-,0.00)
mm_741.1	chr1	43494670	43494870	+	1	NA	NA	NA	49019	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.010000	0.283582	
mm_50726.1	chr6	52245904	52246104	+	1	NA	NA	NA	-194	NM_010450	15396	Mm.26954	NM_010450	ENSMUSG00000038210	Hoxa11	Hox-1.9|Hoxa-11	homeobox A11	protein-coding	0.060000	0.582090	
mm_76651.1	chr8	93187703	93187903	-	1	NA	NA	NA	10001	NM_053200	104158	Mm.292803	NM_053200	ENSMUSG00000056973	Ces1d	Ces3|TGH	carboxylesterase 1D	protein-coding	0.015000	0.547264	
mm_122427.1	chr14	44989576	44989776	-	1	NA	NA	NA	1565	NM_008964	19217	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.055000	0.572139	
mm_77845.1	chr9	5299389	5299589	+	1	NA	NA	NA	972	NM_009807	12362	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.005000	0.398010	-36(GTCTCTAAAAAA,-,0.00)
mm_171770.1	chr5	108517010	108517210	+	1	NA	NA	NA	32917	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.040000	0.512438	
mm_139819.1	chr17	67697137	67697337	+	1	NA	NA	NA	-28	NM_008480	16772	Mm.303386	NM_008480	ENSMUSG00000032796	Lama1	AA408497|Lama	laminin, alpha 1	protein-coding	0.095000	0.731343	
mm_99710.1	chr11	106216902	106217102	+	1	NA	NA	NA	76	NM_028074	72047	Mm.41367	NM_028074	ENSMUSG00000020705	Ddx42	1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	protein-coding	0.150000	0.726368	
mm_127090.1	chr15	97784311	97784511	+	1	NA	NA	NA	46	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.110000	0.800995	
mm_131169.1	chr16	7039809	7040009	+	1	NA	NA	NA	-29926	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.065000	0.522388	-85(GGGTTTAAAAAA,-,0.00)
mm_96033.1	chr11	59556134	59556334	+	1	NA	NA	NA	13548	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.025000	0.378109	
mm_4093.1	chr1	167308663	167308863	+	1	NA	NA	NA	93	NM_001039483	68944	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	0.110000	0.681592	
mm_5924.1	chr1	55226391	55226591	-	1	NA	NA	NA	291	NM_028713	74013	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	0.045000	0.537313	
mm_100413.1	chr11	119425995	119426195	+	1	NA	NA	NA	35623	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.020000	0.512438	
mm_74889.1	chr8	25102457	25102657	-	1	NA	NA	NA	-746	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.050000	0.601990	
mm_70127.1	chr7	143093923	143094123	-	1	NA	NA	NA	619	NM_020277	56843	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	0.015000	0.567164	
mm_35279.1	chr4	20778460	20778660	-	1	NA	NA	NA	108	NM_001290410	269513	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding	0.085000	0.676617	-95(TCCCCTAAAAGA,-,0.00)
mm_30610.1	chr4	6688070	6688270	+	1	NA	NA	NA	-233899	NM_010945	18201	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.015000	0.398010	57(GTCCATAAAAGA,-,0.00)
mm_164479.1	chr16	73678801	73679001	+	1	NA	NA	NA	663166	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.010000	0.412935	
mm_134353.1	chr16	16600455	16600655	-	1	NA	NA	NA	-577	NM_001301817	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.015000	0.412935	
mm_63797.1	chr7	132931076	132931276	+	1	NA	NA	NA	-18446	NM_207302	360216	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0.115000	0.686567	
mm_67757.1	chr7	92669800	92670000	-	1	NA	NA	NA	12	NM_029078	74737	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	0.090000	0.631841	
mm_81417.1	chr9	109055008	109055208	+	1	NA	NA	NA	242	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.015000	0.457711	
mm_125052.1	chr15	25843215	25843415	+	1	NA	NA	NA	17	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.150000	0.761194	
mm_96646.1	chr11	69340353	69340553	+	1	NA	NA	NA	-316	NR_027827	80515	Mm.5324	NM_020591	ENSMUSG00000043419	Chd3os	2310043C11Rik|A030009H04Rik|AA589459|AB041807|MNCb-2875|RNF21	chromodomain helicase DNA binding protein 3, opposite strand	ncRNA	0.100000	0.686567	-35(CACTATTAAAAG,-,0.00),-33(CTATTAAAAGGG,+,0.00)
mm_102578.1	chr11	61720699	61720899	-	1	NA	NA	NA	0	NM_001033227	109342	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0.015000	0.507463	
mm_97924.1	chr11	83588295	83588495	+	1	NA	NA	NA	4692	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.010000	0.487562	
mm_103793.1	chr11	82870993	82871193	-	1	NA	NA	NA	117	NM_001007465	67338	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.105000	0.756219	
mm_71033.1	chr8	33652410	33652610	+	1	NA	NA	NA	-728	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.025000	0.442786	
mm_141337.1	chr17	28511931	28512131	-	1	NA	NA	NA	-18830	NM_026290	67645	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.000000	0.353234	
mm_92006.1	chr10	62327682	62327882	-	1	NA	NA	NA	12639	NM_001146100	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.045000	0.542289	
mm_31242.1	chr4	44807422	44807622	+	1	NA	NA	NA	50963	NM_138590	319885	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	0.005000	0.358209	
mm_74647.1	chr8	13388707	13388907	-	1	NA	NA	NA	7971	NM_009724	11945	Mm.154039	NM_009724	ENSMUSG00000031449	Atp4b	AV080843	ATPase, H+/K+ exchanging, beta polypeptide	protein-coding	0.015000	0.592040	
mm_55564.1	chr6	71360732	71360932	-	1	NA	NA	NA	-12595	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.010000	0.487562	
mm_169904.1	chr16	52084159	52084359	+	1	NA	NA	NA	52710	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.000000	0.537313	
mm_79326.1	chr9	53301485	53301685	+	1	NA	NA	NA	-85	NM_176846	320051	Mm.277540	NM_176846	ENSMUSG00000034584	Exph5	AC079869.22gm5|B130009M24Rik|E030050P12|Kiaa0624|Slac2b|slac2-b	exophilin 5	protein-coding	0.025000	0.442786	
mm_28797.1	chr3	96094215	96094415	-	1	NA	NA	NA	-10212	NM_001025613	229603	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0.045000	0.537313	
mm_39241.1	chr5	3341352	3341552	+	1	NA	NA	NA	-2441	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.105000	0.756219	
mm_167770.1	chr9	111024377	111024577	+	1	NA	NA	NA	5185	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.030000	0.542289	
mm_107746.1	chr12	58813809	58814009	+	1	NA	NA	NA	198108	NM_009147	20334	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	0.000000	0.427861	
mm_6324.1	chr1	71607890	71608090	-	1	NA	NA	NA	45244	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.020000	0.457711	
mm_116615.1	chr13	48871598	48871798	-	1	NA	NA	NA	-813	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.025000	0.577114	
mm_54878.1	chr6	42692950	42693150	-	1	NA	NA	NA	9	NM_029930	77574	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding	0.070000	0.671642	
mm_166460.1	chr5	139547768	139547968	+	1	NA	NA	NA	3970	NM_013702	22255	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	0.050000	0.517413	-11(GCTCTTAGAGAC,+,0.00),44(ATTTTTAAAGGC,+,0.00)
mm_167268.1	chr8	31111504	31111704	+	1	NA	NA	NA	-242	NM_175136	68867	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	0.060000	0.616915	
mm_121265.1	chr14	103074301	103074501	+	1	NA	NA	NA	4185	NM_001033242	211286	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0.000000	0.422886	
mm_150802.1	chr19	44333250	44333450	+	1	NA	NA	NA	24	NM_183216	329065	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0.030000	0.532338	-57(CCCTTTAAATCC,+,0.00)
mm_73536.1	chr8	108703590	108703790	+	1	NA	NA	NA	-10954	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.030000	0.447761	
mm_84224.1	chr9	61946637	61946837	-	1	NA	NA	NA	62	NM_024245	71819	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.130000	0.706468	
mm_156576.1	chrX	152001791	152001991	+	1	NA	NA	NA	-5	NM_016763	15108	Mm.6994	NM_016763	ENSMUSG00000025260	Hsd17b10	17bHSD10|Ads9|ERAB|Hadh2	hydroxysteroid (17-beta) dehydrogenase 10	protein-coding	0.070000	0.606965	71(GTTTTTATGCAG,+,0.00)
mm_118946.1	chr14	27341958	27342158	+	1	NA	NA	NA	6021	NM_001289687	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.000000	0.358209	-6(TTTTTTAAAGAC,+,0.00)
mm_51585.1	chr6	83795064	83795264	+	1	NA	NA	NA	6	NM_001164187	56174	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	0.115000	0.651741	
mm_74346.1	chr8	127485105	127485305	+	1	NA	NA	NA	185553	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.000000	0.358209	-83(CCTCTTAAACAC,+,0.00)
mm_59519.1	chr7	27596981	27597181	+	1	NA	NA	NA	251	NM_001331108	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.025000	0.666667	
mm_3372.1	chr1	138963557	138963757	+	1	NA	NA	NA	-52	NM_001166501	329260	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.145000	0.810945	
mm_126860.1	chr15	89322845	89323045	+	1	NA	NA	NA	225	NM_182928	223780	Mm.210541	NM_182928	ENSMUSG00000054136	Adm2	Am2|IMD|Imdn	adrenomedullin 2	protein-coding	0.050000	0.611940	
mm_141345.1	chr17	28558740	28558940	-	1	NA	NA	NA	-339	NR_105935	102465585		NR_105935	ENSMUSG00000099152	Mir6969	Gm27305|mmu-mir-6969	microRNA 6969	ncRNA	0.015000	0.557214	
mm_45887.1	chr5	88526429	88526629	-	1	NA	NA	NA	1368	NM_152839	16069	Mm.1192	NM_152839	ENSMUSG00000067149	Jchain	9530090F24Rik|AI323815|Igj|Jch	immunoglobulin joining chain	protein-coding	0.000000	0.412935	
mm_90880.1	chr10	9675736	9675936	-	1	NA	NA	NA	-628	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0.060000	0.631841	
mm_126703.1	chr15	85177651	85177851	+	1	NA	NA	NA	-21619	NR_040360	100502602	Mm.390830	NR_040360		Gm19277	-	predicted gene, 19277	ncRNA	0.020000	0.373134	
mm_28198.1	chr3	88254582	88254782	-	1	NA	NA	NA	2	NM_021375	58176	Mm.103777	NM_021375	ENSMUSG00000103766	Rhbg	-	Rhesus blood group-associated B glycoprotein	protein-coding	0.085000	0.726368	
mm_21887.1	chr2	166155179	166155379	-	1	NA	NA	NA	6	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.100000	0.681592	
mm_149075.1	chr19	8883755	8883955	+	1	NA	NA	NA	-23	NM_001286103	102308570	Mm.27503	NM_001286103	ENSMUSG00000096740	Lbhd1	Gm21743	LBH domain containing 1	protein-coding	0.005000	0.502488	
mm_15511.1	chr2	158258142	158258342	+	1	NA	NA	NA	1	NM_177850	329547	Mm.260883	NM_177850	ENSMUSG00000052922	Bpi	9230105K17Rik|Bpifd1	bactericidal permeablility increasing protein	protein-coding	0.030000	0.611940	
mm_166237.1	chr5	70176470	70176670	+	1	NA	NA	NA	-584266	NM_001347363	67980	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	0.000000	0.323383	
mm_10700.1	chr2	22755889	22756089	+	1	NA	NA	NA	-18338	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.000000	0.457711	
mm_131251.1	chr16	10545341	10545541	+	1	NA	NA	NA	102	NM_001204229	74374	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	0.125000	0.701493	
mm_101285.1	chr11	21572102	21572302	-	1	NA	NA	NA	-79	NM_145425	216560	Mm.138090	NM_145425	ENSMUSG00000020319	Wdpcp	AV249152	WD repeat containing planar cell polarity effector	protein-coding	0.080000	0.552239	-35(GTTTTTAAAAGG,-,0.00)
mm_106319.1	chr11	118303126	118303326	-	1	NA	NA	NA	-12982	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.015000	0.522388	
mm_21835.1	chr2	165717489	165717689	-	1	NA	NA	NA	62291	NM_010165	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	0.025000	0.557214	
mm_146580.1	chr18	7608233	7608433	-	1	NA	NA	NA	18530	NM_001081287	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0.000000	0.288557	
mm_117243.1	chr13	64363594	64363794	-	1	NA	NA	NA	6826	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.010000	0.427861	
mm_77902.1	chr9	7348760	7348960	+	1	NA	NA	NA	1486	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.015000	0.432836	
mm_117771.1	chr13	96542401	96542601	-	1	NA	NA	NA	78	NM_012048	27015	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	0.060000	0.611940	27(GCGCCTAAAGGC,-,0.00)
mm_116852.1	chr13	54759413	54759613	-	1	NA	NA	NA	6927	NM_033610	104069	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	0.025000	0.611940	
mm_80156.1	chr9	70955935	70956135	+	1	NA	NA	NA	-3814	NM_001324472	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.005000	0.472637	-72(TTTTTTAAAGCT,+,0.00)
mm_61461.1	chr7	75596563	75596763	+	1	NA	NA	NA	141129	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.000000	0.318408	
mm_101754.1	chr11	43385023	43385223	-	1	NA	NA	NA	-10662	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.020000	0.557214	
mm_9698.1	chr1	178337684	178337884	-	1	NA	NA	NA	0	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.170000	0.741294	
mm_163113.1	chr11	71597340	71597540	-	1	NA	NA	NA	-153263	NM_177618	216881	Mm.48648	NM_177618	ENSMUSG00000020811	Wscd1	mKIAA0523	WSC domain containing 1	protein-coding	0.000000	0.512438	
mm_172068.1	chr6	136532933	136533133	+	1	NA	NA	NA	14182	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.000000	0.452736	
mm_28278.1	chr3	88950072	88950272	-	1	NA	NA	NA	110	NM_022994	65111	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0.140000	0.726368	
mm_118247.1	chr13	111884268	111884468	-	1	NA	NA	NA	16432	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.020000	0.477612	
mm_155098.1	chrX	48274811	48275011	+	1	NA	NA	NA	10515	NR_045916	100500713	Mm.396609	NR_045916	ENSMUSG00000097197	9530027J09Rik	-	RIKEN cDNA 9530027J09 gene	ncRNA	0.025000	0.507463	
mm_125444.1	chr15	46324497	46324697	+	1	NA	NA	NA	12	NR_045509	71120	Mm.158571	NR_045509	ENSMUSG00000099751	1700022A22Rik	4933413D07Rik	RIKEN cDNA 1700022A22 gene	ncRNA	0.015000	0.527363	
mm_37482.1	chr4	123572823	123573023	-	1	NA	NA	NA	-43497	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.020000	0.527363	
mm_101416.1	chr11	29247169	29247369	-	1	NA	NA	NA	3	NM_025740	216618	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	0.070000	0.621891	
mm_49541.1	chr6	30186509	30186709	+	1	NA	NA	NA	9986	NR_038124	100463519	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	0.010000	0.452736	
mm_150726.1	chr19	43675371	43675571	+	1	NA	NA	NA	293	NR_045645	100502982	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	0.085000	0.696517	
mm_66646.1	chr7	45666209	45666409	-	1	NA	NA	NA	85	NM_018876	14344	Mm.290046	NM_018876	ENSMUSG00000055978	Fut2	-	fucosyltransferase 2	protein-coding	0.035000	0.557214	
mm_65679.1	chr7	28331424	28331624	-	1	NA	NA	NA	7195	NM_013676	20924	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0.015000	0.492537	
mm_165299.1	chr2	92024401	92024601	-	1	NA	NA	NA	-331	NM_011957	26427	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.070000	0.621891	
mm_19921.1	chr2	116000089	116000289	-	1	NA	NA	NA	64430	NM_001346044	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.040000	0.437811	65(TACCATAAAAGA,-,0.00)
mm_74571.1	chr8	11199247	11199447	-	1	NA	NA	NA	-113458	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.020000	0.532338	
mm_159526.1	chr4	61835227	61835427	-	1	NA	NA	NA	-147	NM_008649	17844	Mm.445286	NM_008649	ENSMUSG00000058523	Mup5	Mup18	major urinary protein 5	protein-coding	0.010000	0.353234	
mm_132920.1	chr16	49772733	49772933	+	1	NA	NA	NA	73539	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.000000	0.497512	
mm_149251.1	chr19	10389148	10389348	+	1	NA	NA	NA	158	NM_173068	54525	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0.155000	0.736318	
mm_125853.1	chr15	74989488	74989688	+	1	NA	NA	NA	-6158	NM_020498	57248	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	0.005000	0.467662	
mm_26698.1	chr3	157548720	157548920	+	1	NA	NA	NA	4541	NR_029572	387181		NR_029572	ENSMUSG00000065431	Mir186	Mirn186|mir-186|mmu-mir-186	microRNA 186	ncRNA	0.000000	0.383085	
mm_105970.1	chr11	115491731	115491931	-	1	NA	NA	NA	-17	NM_015807	50773	Mm.390379	NM_015807	ENSMUSG00000020736	Nt5c	Dnt|Dnt1|Umph-2|Umph2	5',3'-nucleotidase, cytosolic	protein-coding	0.085000	0.651741	
mm_122886.1	chr14	54946872	54947072	-	1	NA	NA	NA	2170	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.030000	0.532338	
mm_6477.1	chr1	74069966	74070166	-	1	NA	NA	NA	54381	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.020000	0.582090	
mm_91959.1	chr10	61147508	61147708	-	1	NA	NA	NA	76	NM_009163	20397	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.120000	0.746269	
mm_89724.1	chr10	98916018	98916218	+	1	NA	NA	NA	966	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.035000	0.552239	
mm_161005.1	chr11	116775349	116775549	-	1	NA	NA	NA	58	NM_011371	20445	Mm.436887	NM_011371	ENSMUSG00000009588	St6galnac1	Siat7a	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	protein-coding	0.020000	0.507463	-6(GCTTTAAGAAGC,+,0.00)
mm_111038.1	chr12	79192106	79192306	-	1	NA	NA	NA	-387	NM_021557	17252	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c	retinol dehydrogenase 11	protein-coding	0.020000	0.467662	
mm_22755.1	chr3	19980494	19980694	+	1	NA	NA	NA	23540	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.010000	0.368159	
mm_247.1	chr1	19212172	19212372	+	1	NA	NA	NA	218	NM_001025305	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.005000	0.427861	
mm_91406.1	chr10	30978654	30978854	-	1	NA	NA	NA	-135971	NM_013904	15214	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	0.005000	0.457711	
mm_141825.1	chr17	34626987	34627187	-	1	NA	NA	NA	61	NM_019441	54397	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	0.045000	0.577114	
mm_99644.1	chr11	105292607	105292807	+	1	NA	NA	NA	61	NM_008626	17534	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0.100000	0.706468	
mm_150214.1	chr19	32960051	32960251	+	1	NA	NA	NA	202574	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.005000	0.502488	
mm_20387.1	chr2	128967954	128968154	-	1	NA	NA	NA	652	NM_178404	78751	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	0.200000	0.845771	
mm_149633.1	chr19	17222632	17222832	+	1	NA	NA	NA	116773	NM_001136484	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.005000	0.348259	
mm_93736.1	chr10	120112894	120113094	-	1	NA	NA	NA	-29	NM_080446	117599	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.075000	0.636816	
mm_162113.1	chrX	52164802	52165002	-	1	NA	NA	NA	21	NM_008150	14735	Mm.1528	NM_008150	ENSMUSG00000031119	Gpc4	9530073D23Rik|AF311610|AI385680|AI661372|K-glypican	glypican 4	protein-coding	0.080000	0.636816	
mm_148381.1	chr19	3322204	3322404	+	1	NA	NA	NA	-997	NM_013495	12894	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0.025000	0.497512	-89(CCTTTTAAATAA,+,0.00)
mm_152564.1	chr19	11586909	11587109	-	1	NA	NA	NA	17795	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.010000	0.323383	
mm_122705.1	chr14	52180146	52180346	-	1	NA	NA	NA	16993	NM_033618	114741	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	0.020000	0.422886	
mm_2891.1	chr1	131867541	131867741	+	1	NA	NA	NA	364	NM_144875	226422	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	0.045000	0.552239	
mm_55252.1	chr6	52909495	52909695	-	1	NA	NA	NA	25	NM_001168277	231986	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.000000	0.517413	
mm_42581.1	chr5	117292693	117292893	+	1	NA	NA	NA	-5229	NM_018858	23980	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	0.015000	0.532338	
mm_105769.1	chr11	109675997	109676197	-	1	NA	NA	NA	25176	NM_001313976	19084	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.015000	0.572139	
mm_95024.1	chr11	32024602	32024802	+	1	NA	NA	NA	23425	NM_001290681	18197	Mm.3304	NM_008741	ENSMUSG00000020297	Nsg2	-	neuron specific gene family member 2	protein-coding	0.015000	0.427861	-14(TGGTAGAAAAGG,-,0.00),7(GTGTTTAAAGGC,-,0.00)
mm_116004.1	chr13	24603777	24603977	-	1	NA	NA	NA	890	NR_024599	76024	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347|OTTMUSG00000000601|OTTMUSG00000000602	X-linked lymphocyte-regulated 5 pseudogene	pseudo	0.020000	0.502488	
mm_157658.1	chrX	57338659	57338859	-	1	NA	NA	NA	-30	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	0.015000	0.442786	
mm_96433.1	chr11	67298373	67298573	+	1	NA	NA	NA	21349	NM_177369	17885	Mm.340163	NM_177369	ENSMUSG00000055775	Myh8	4832426G23Rik|AI327267|MHCp|MyHC-pn|Myhs-p|Myhsp	myosin, heavy polypeptide 8, skeletal muscle, perinatal	protein-coding	0.060000	0.626866	
mm_109655.1	chr12	112976412	112976612	+	1	NA	NA	NA	30	NM_001145900	399566	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	0.125000	0.761194	
mm_186.1	chr1	15286910	15287110	+	1	NA	NA	NA	-25442	NM_001098528	98741	Mm.156081	NM_001033195	ENSMUSG00000092083	Kcnb2	9630047L19Rik|BB130875|Kv2.2	potassium voltage gated channel, Shab-related subfamily, member 2	protein-coding	0.090000	0.681592	
mm_166653.1	chr6	86616640	86616840	-	1	NA	NA	NA	-11434	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.005000	0.502488	
mm_92983.1	chr10	86694011	86694211	-	1	NA	NA	NA	8584	NR_015572	66263	Mm.392261	NR_015572		1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	0.010000	0.427861	
mm_156032.1	chrX	107256062	107256262	+	1	NA	NA	NA	134	NM_001033251	213439	Mm.383562	NM_001033251	ENSMUSG00000073008	Gpr174	Gm376|Lypsr3	G protein-coupled receptor 174	protein-coding	0.000000	0.407960	
mm_52645.1	chr6	117178887	117179087	+	1	NA	NA	NA	10452	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.010000	0.572139	
mm_151778.1	chr19	5364714	5364914	-	1	NA	NA	NA	1549	NM_001038231	23825	Mm.358649	NM_011793	ENSMUSG00000024844	Banf1	Baf|Bcrp1|L2bp1/Baf	barrier to autointegration factor 1	protein-coding	0.015000	0.542289	
mm_89865.1	chr10	108162208	108162408	+	1	NA	NA	NA	-92	NM_027892	17931	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.125000	0.711443	
mm_167933.1	chrX	106186832	106187032	+	1	NA	NA	NA	-168	NM_008828	18655	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding	0.080000	0.616915	
mm_170132.1	chr17	39847192	39847392	+	1	NA	NA	NA	4295	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.080000	0.517413	
mm_64.1	chr1	6599581	6599781	+	1	NA	NA	NA	112450	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.462687	
mm_68642.1	chr7	118447834	118448034	-	1	NA	NA	NA	-4382	NM_138649	110058	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk	synaptotagmin XVII	protein-coding	0.115000	0.746269	
mm_112670.1	chr13	16027378	16027578	+	1	NA	NA	NA	15627	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.482587	
mm_4148.1	chr1	171017950	171018150	+	1	NA	NA	NA	-876	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.000000	0.437811	
mm_52652.1	chr6	117716242	117716442	+	1	NA	NA	NA	35427	NR_045731	72263	Mm.443289	NR_045731	ENSMUSG00000099869	1700030F04Rik	-	RIKEN cDNA 1700030F04 gene	ncRNA	0.060000	0.577114	
mm_114426.1	chr13	64432671	64432871	+	1	NA	NA	NA	218	NM_053180	105278	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	0.105000	0.661692	
mm_103420.1	chr11	75594639	75594839	-	1	NA	NA	NA	5492	NR_110477	654359	Mm.439961	NR_110477		Gm12338	OTTMUSG00000006216	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.025000	0.537313	
mm_121687.1	chr14	13914371	13914571	-	1	NA	NA	NA	46842	NM_001285780	66231	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.005000	0.457711	
mm_10204.1	chr2	4976081	4976281	+	1	NA	NA	NA	59	NM_026754	68527	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding	0.010000	0.532338	
mm_158187.1	chrX	104382546	104382746	-	1	NA	NA	NA	31200	NM_009592	11306	Mm.426128	NM_009592	ENSMUSG00000031333	Abcb7	AA517758|AU019072|Abc7	ATP-binding cassette, sub-family B (MDR/TAP), member 7	protein-coding	0.025000	0.487562	
mm_30340.1	chr3	151734763	151734963	-	1	NA	NA	NA	15096	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.005000	0.328358	
mm_1201.1	chr1	62718822	62719022	+	1	NA	NA	NA	15605	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.010000	0.522388	-94(TGCCATAAAAGG,-,0.00)
mm_32948.1	chr4	119540424	119540624	+	1	NA	NA	NA	863	NM_172699	230700	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	0.030000	0.477612	
mm_80398.1	chr9	77046588	77046788	+	1	NA	NA	NA	-907	NM_012033	26944	Mm.23199	NM_012033	ENSMUSG00000032357	Tinag	AI452335|TIN-ag	tubulointerstitial nephritis antigen	protein-coding	0.005000	0.437811	
mm_49783.1	chr6	35177638	35177838	+	1	NA	NA	NA	122	NM_027513	70699	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	0.175000	0.791045	
mm_84945.1	chr9	83023897	83024097	-	1	NA	NA	NA	-48508	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.015000	0.477612	
mm_140846.1	chr17	23676508	23676708	-	1	NA	NA	NA	841	NM_001161746	27279	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	0.060000	0.641791	
mm_30188.1	chr3	144691854	144692054	-	1	NA	NA	NA	28381	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.010000	0.447761	
mm_29182.1	chr3	106539362	106539562	-	1	NA	NA	NA	-8336	NM_001286986	67171	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0.020000	0.447761	
mm_98942.1	chr11	98386525	98386725	+	1	NA	NA	NA	-7	NM_008890	18948	Mm.57030	NM_008890	ENSMUSG00000038216	Pnmt	Pent	phenylethanolamine-N-methyltransferase	protein-coding	0.050000	0.646766	
mm_147711.1	chr18	60812252	60812452	-	1	NA	NA	NA	276	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.030000	0.562189	
mm_146784.1	chr18	20114515	20114715	-	1	NA	NA	NA	158	NM_001291804	13505	Mm.33740	NM_013504	ENSMUSG00000044322	Dsc1	1110020A10Rik|AI507491	desmocollin 1	protein-coding	0.005000	0.567164	
mm_72830.1	chr8	88272159	88272359	+	1	NA	NA	NA	-144	NM_007406	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.040000	0.572139	
mm_55166.1	chr6	51888283	51888483	-	1	NA	NA	NA	124166	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.000000	0.402985	-49(GCTTTTATAGTT,+,0.00)
mm_27524.1	chr3	57301877	57302077	-	1	NA	NA	NA	-58	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	0.005000	0.432836	-7(TGCTTTATGAGG,-,0.00)
mm_71518.1	chr8	46846542	46846742	+	1	NA	NA	NA	106897	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.030000	0.477612	
mm_33579.1	chr4	132530647	132530847	+	1	NA	NA	NA	4667	NM_007512	11983	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0.035000	0.467662	73(CTCTCTATAAAG,-,0.00)
mm_109440.1	chr12	110737904	110738104	+	1	NA	NA	NA	72	NM_001347428	69641	Mm.475762	NM_027149	ENSMUSG00000037957	Wdr20	2310040A13Rik|AI549910|Wdr20a	WD repeat domain 20	protein-coding	0.090000	0.651741	
mm_94458.1	chr11	6415749	6415949	+	1	NA	NA	NA	-21	NM_008907	268373	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	0.125000	0.641791	-14(GGGTATAAAGGA,-,0.00)
mm_114346.1	chr13	60902434	60902634	+	1	NA	NA	NA	2313	NM_026429	116913	Mm.443229	NM_026429	ENSMUSG00000062705	Tpbpb	1600012N09Rik	trophoblast specific protein beta	protein-coding	0.000000	0.467662	-93(GCCTTTATACTC,+,0.00)
mm_60435.1	chr7	44476799	44476999	+	1	NA	NA	NA	6552	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.412935	
mm_62244.1	chr7	98889812	98890012	+	1	NA	NA	NA	51067	NM_001285795	22411	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.020000	0.527363	
mm_25186.1	chr3	103373665	103373865	+	1	NA	NA	NA	94472	NM_001079830	94093	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.010000	0.542289	
mm_125523.1	chr15	57695574	57695774	+	1	NA	NA	NA	1007	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.120000	0.741294	
mm_130618.1	chr15	100041305	100041505	-	1	NA	NA	NA	2741	NM_001159361	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.015000	0.422886	
mm_117970.1	chr13	100012400	100012600	-	1	NA	NA	NA	3139	NM_030026	78038	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	0.000000	0.343284	
mm_39127.1	chr4	155063929	155064129	-	1	NA	NA	NA	-3001	NM_001042407	668173	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0.000000	0.626866	
mm_162840.1	chr10	85102498	85102698	+	1	NA	NA	NA	-29	NM_001013028	103266	Mm.335025	NM_001013028	ENSMUSG00000060935	Tmem263	AI597468	transmembrane protein 263	protein-coding	0.150000	0.825871	
mm_5017.1	chr1	193145190	193145390	+	1	NA	NA	NA	-7822	NM_016851	54139	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	0.015000	0.547264	
mm_150759.1	chr19	44203175	44203375	+	1	NA	NA	NA	-13	NM_024450	30049	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	0.030000	0.517413	
mm_27626.1	chr3	60320238	60320438	-	1	NA	NA	NA	-152492	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.000000	0.497512	
mm_156344.1	chrX	139010089	139010289	+	1	NA	NA	NA	75047	NM_177920	331535	Mm.211704	NM_177920	ENSMUSG00000031271	Serpina7	C730040N12Rik|Tbg	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7	protein-coding	0.005000	0.502488	
mm_159196.1	chr2	119290111	119290311	+	1	NA	NA	NA	1469	NM_172269	228545	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	0.030000	0.567164	
mm_158357.1	chrX	134600219	134600419	-	1	NA	NA	NA	686	NM_013463	11605	Mm.1114	NM_013463	ENSMUSG00000031266	Gla	Ags	galactosidase, alpha	protein-coding	0.015000	0.457711	
mm_141866.1	chr17	34809999	34810199	-	1	NA	NA	NA	-5673	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.035000	0.611940	
mm_160903.1	chr11	76495369	76495569	-	1	NA	NA	NA	-974	NM_001346670	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.020000	0.562189	
mm_14459.1	chr2	131206940	131207140	+	1	NA	NA	NA	-3320	NM_001291032	69596	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0.015000	0.507463	
mm_171853.1	chr5	16941429	16941629	+	1	NA	NA	NA	387628	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.015000	0.492537	
mm_135082.1	chr16	34513950	34514150	-	1	NA	NA	NA	-23	NM_177357	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.035000	0.592040	
mm_135599.1	chr16	51363795	51363995	-	1	NA	NA	NA	580486	NR_131005	78639	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0.030000	0.402985	-59(AGCTATAAAAGA,-,0.00)
mm_22617.1	chr3	14578808	14579008	+	1	NA	NA	NA	237	NM_007892	13559	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	0.135000	0.741294	
mm_145522.1	chr18	60558095	60558295	+	1	NA	NA	NA	-2591	NM_025776	66810	Mm.275106	NM_025776	ENSMUSG00000024604	Rbm22	8430430L24Rik	RNA binding motif protein 22	protein-coding	0.015000	0.447761	7(GCCTTTATGCAG,+,0.00)
mm_133305.1	chr16	77598019	77598219	+	1	NA	NA	NA	-817	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.000000	0.313433	33(GTTTATAAAAAG,-,0.00)
mm_165793.1	chr3	138785406	138785606	+	1	NA	NA	NA	43298	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.020000	0.447761	
mm_26522.1	chr3	145924344	145924544	+	1	NA	NA	NA	182	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.085000	0.681592	
mm_170427.1	chr18	74332343	74332543	-	1	NA	NA	NA	49343	NM_028948	74453	Mm.182293	NM_028948	ENSMUSG00000035394	Cfap53	4933415I03Rik|Ccdc11	cilia and flagella associated protein 53	protein-coding	0.030000	0.517413	-29(TTCTATAAAAGT,-,0.00)
mm_149778.1	chr19	23134396	23134596	+	1	NA	NA	NA	-6730	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.030000	0.547264	
mm_70373.1	chr8	9977762	9977962	+	1	NA	NA	NA	145	NM_026868	68904	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	0.130000	0.746269	
mm_76634.1	chr8	92354492	92354692	-	1	NA	NA	NA	1528	NR_110452	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	0.025000	0.407960	
mm_145369.1	chr18	56733100	56733300	+	1	NA	NA	NA	25387	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.020000	0.507463	
mm_81113.1	chr9	106453823	106454023	+	1	NA	NA	NA	85	NM_021567	59092	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	0.120000	0.751244	
mm_54871.1	chr6	42598869	42599069	-	1	NA	NA	NA	-1597	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.010000	0.407960	-33(GTGTATATAAGT,-,0.00)
mm_131819.1	chr16	22920324	22920524	+	1	NA	NA	NA	202	NM_001083904	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.020000	0.497512	
mm_24223.1	chr3	88702017	88702217	+	1	NA	NA	NA	-14737	NM_009069	19769	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	0.010000	0.442786	
mm_27101.1	chr3	30509386	30509586	-	1	NA	NA	NA	1	NM_021442	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.005000	0.512438	
mm_131560.1	chr16	18127307	18127507	+	1	NA	NA	NA	-299	NM_022982	65079	Mm.40149	NM_022982	ENSMUSG00000043811	Rtn4r	NOGOR|NgR|NgR1	reticulon 4 receptor	protein-coding	0.145000	0.766169	
mm_162975.1	chr11	17487104	17487304	+	1	NA	NA	NA	229516	NM_001330649	57316	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.000000	0.383085	-67(GTGTTTTAAAGA,-,0.00)
mm_129606.1	chr15	79931616	79931816	-	1	NA	NA	NA	930	NM_144811	52609	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	0.025000	0.522388	
mm_35826.1	chr4	47302457	47302657	-	1	NA	NA	NA	-50665	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.015000	0.512438	
mm_148268.1	chr18	81589160	81589360	-	1	NA	NA	NA	402820	NR_039589	100628596		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.015000	0.368159	55(CTCTTTAAAAAA,-,0.00)
mm_70289.1	chr8	3659668	3659868	+	1	NA	NA	NA	3998	NM_022984	57264	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0.030000	0.497512	
mm_154229.1	chr19	59943563	59943763	-	1	NA	NA	NA	-9	NM_001164367	74998	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	0.145000	0.776119	
mm_153505.1	chr19	41359074	41359274	-	1	NA	NA	NA	25896	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.005000	0.477612	
mm_171745.1	chr4	98665743	98665943	+	1	NA	NA	NA	-60911	NM_001081202	381591	Mm.34340	NM_001081202	ENSMUSG00000087166	L1td1	AA546746|AB211064|D76865|ECAT11	LINE-1 type transposase domain containing 1	protein-coding	0.020000	0.507463	
mm_33051.1	chr4	123105034	123105234	+	1	NA	NA	NA	-27	NM_007559	12164	Mm.439764	NM_007559	ENSMUSG00000002384	Bmp8b	Op3	bone morphogenetic protein 8b	protein-coding	0.090000	0.666667	
mm_94606.1	chr11	14599174	14599374	+	1	NA	NA	NA	34	NM_001164166	432536	Mm.33646	NM_001164166	ENSMUSG00000084135	Pom121l12	1700054H16Rik	POM121 membrane glycoprotein-like 12	protein-coding	0.035000	0.597015	
mm_92681.1	chr10	80587207	80587407	-	1	NA	NA	NA	3034	NM_145421	216169	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0.005000	0.562189	
mm_168961.1	chr12	80260033	80260233	-	1	NA	NA	NA	238	NM_134156	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.050000	0.661692	
mm_104304.1	chr11	90663705	90663905	-	1	NA	NA	NA	23796	NM_028011	71943	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	0.005000	0.462687	
mm_117401.1	chr13	73700595	73700795	-	1	NA	NA	NA	0	NM_028878	74338	Mm.271635	NM_028878	ENSMUSG00000021565	Slc6a19	4632401C08Rik|B<0>AT1	solute carrier family 6 (neurotransmitter transporter), member 19	protein-coding	0.045000	0.641791	-35(TTCTCTATAAAG,-,0.00),-33(CTCTATAAAGAG,+,0.00),-33(CTCTATAAAGAG,-,0.00)
mm_16650.1	chr2	6322985	6323185	-	1	NA	NA	NA	328	NM_001080548	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.140000	0.781095	77(GCCTTTAGACCC,+,0.00)
mm_24681.1	chr3	94886882	94887082	+	1	NA	NA	NA	-24	NM_008945	19172	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	0.055000	0.547264	46(ATTTATAAAGCC,+,0.00)
mm_83589.1	chr9	48420519	48420719	-	1	NA	NA	NA	-33725	NR_026561	667933	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.025000	0.507463	
mm_23157.1	chr3	40531489	40531689	+	1	NA	NA	NA	-8677	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.085000	0.701493	
mm_76546.1	chr8	88118526	88118726	-	1	NA	NA	NA	-133	NM_029074	382030	Mm.216574	NM_029074	ENSMUSG00000036810	Cnep1r1	5033428A16Rik|NEP1-R1|Tmem188	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding	0.050000	0.507463	
mm_86336.1	chr9	123113110	123113310	-	1	NA	NA	NA	-5	NM_026917	69035	Mm.28300	NM_026917	ENSMUSG00000025786	Zdhhc3	1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373	zinc finger, DHHC domain containing 3	protein-coding	0.145000	0.721393	
mm_50448.1	chr6	48904867	48905067	+	1	NA	NA	NA	-19	NM_001161622	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.015000	0.492537	-15(GAGTATAAGAGG,-,0.00)
mm_43173.1	chr5	127615609	127615809	+	1	NA	NA	NA	1683	NM_133895	100561	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.005000	0.482587	
mm_168397.1	chr11	29172762	29172962	+	1	NA	NA	NA	-45	NM_134034	104570	Mm.276386	NM_134034	ENSMUSG00000020463	Smek2	AW011752|AW557776|Ppp4r3b|mKIAA1387	SMEK homolog 2, suppressor of mek1 (Dictyostelium)	protein-coding	0.100000	0.636816	
mm_172168.1	chr6	44793048	44793248	+	1	NA	NA	NA	-266913	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.070000	0.527363	38(AACTTTAAATGG,-,0.00)
mm_150315.1	chr19	34573393	34573593	+	1	NA	NA	NA	-10036	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.015000	0.487562	
mm_105200.1	chr11	102097434	102097634	-	1	NA	NA	NA	3766	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.050000	0.547264	
mm_132884.1	chr16	48816869	48817069	+	1	NA	NA	NA	113	NM_023881	57263	Mm.21123	NM_023881	ENSMUSG00000022650	Retnlb	9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3	resistin like beta	protein-coding	0.000000	0.383085	
mm_20426.1	chr2	129304701	129304901	-	1	NA	NA	NA	5171	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.010000	0.422886	
mm_145770.1	chr18	65023783	65023983	+	1	NA	NA	NA	356	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.025000	0.552239	73(CCCTTTTAGAGG,-,0.00),74(CCTTTTAGAGGA,+,0.00)
mm_6076.1	chr1	61851391	61851591	-	1	NA	NA	NA	212667	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0.015000	0.477612	-17(CCTTTTATAAGA,+,0.00)
mm_168282.1	chr1	107823608	107823808	+	1	NA	NA	NA	-93551	NR_102306	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	0.060000	0.646766	
mm_67097.1	chr7	69907964	69908164	-	1	NA	NA	NA	411970	NR_045940	73796	Mm.410832	NR_045940	ENSMUSG00000108885	4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA	0.005000	0.417910	
mm_77173.1	chr8	111690348	111690548	-	1	NA	NA	NA	562	NM_025583	66473	Mm.34374	NM_025583	ENSMUSG00000031957	Ctrb1	2200008D09Rik|AI504462|Ctrb|Prt-2	chymotrypsinogen B1	protein-coding	0.000000	0.437811	
mm_153206.1	chr19	34649623	34649823	-	1	NA	NA	NA	8834	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.005000	0.417910	
mm_4374.1	chr1	172135293	172135493	+	1	NA	NA	NA	8638	NM_023041	19298	Mm.247764	NM_023041	ENSMUSG00000003464	Pex19	Pxf	peroxisomal biogenesis factor 19	protein-coding	0.015000	0.402985	
mm_8638.1	chr1	156428431	156428631	-	1	NA	NA	NA	-7616	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.025000	0.388060	14(CTCTTTAAAGAG,+,0.00),14(CTCTTTAAAGAG,-,0.00)
mm_4265.1	chr1	171465913	171466113	+	1	NA	NA	NA	28452	NM_172647	16456	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	0.010000	0.487562	-34(GCCCATATAAAC,-,0.00),-32(CCATATAAACCC,+,0.00)
mm_95452.1	chr11	50357666	50357866	+	1	NA	NA	NA	113	NR_030529	100049547		NR_030529	ENSMUSG00000076450	Mir804	Mirn804|mmu-mir-804	microRNA 804	ncRNA	0.005000	0.562189	
mm_75418.1	chr8	46739384	46739584	-	1	NA	NA	NA	31	NR_045750	100503498	Mm.187358	NR_045750	ENSMUSG00000097534	Gm16675	-	predicted gene, 16675	ncRNA	0.120000	0.636816	
mm_111413.1	chr12	91384317	91384517	-	1	NA	NA	NA	-8	NM_181815	75216	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0.060000	0.592040	
mm_57271.1	chr6	123289135	123289335	-	1	NA	NA	NA	636	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.025000	0.492537	
mm_158545.1	chrX	145480550	145480750	-	1	NA	NA	NA	6989	NM_001290274	27494	Mm.100068	NM_153319	ENSMUSG00000041688	Amot	CAG-2|D0Kist1|Sii6	angiomotin	protein-coding	0.015000	0.402985	
mm_11822.1	chr2	44335827	44336027	+	1	NA	NA	NA	-270603	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.000000	0.398010	
mm_128357.1	chr15	39944559	39944759	-	1	NA	NA	NA	-665	NM_001347036	239393	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0.020000	0.517413	-35(CACTTTAAAAAG,-,0.00)
mm_38734.1	chr4	145245497	145245697	-	1	NA	NA	NA	1273	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.010000	0.562189	
mm_82050.1	chr9	122421205	122421405	+	1	NA	NA	NA	-22504	NR_045967	654800	Mm.393956	NR_045967		A730085K08Rik	-	RIKEN cDNA A730085K08 gene	ncRNA	0.015000	0.542289	
mm_163645.1	chr13	63063790	63063990	+	1	NA	NA	NA	98997	NM_001289924	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.000000	0.522388	
mm_26031.1	chr3	135455830	135456030	+	1	NA	NA	NA	17171	NM_025356	66105	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.000000	0.298507	1(AACTTTAAAGGG,-,0.00),2(ACTTTAAAGGGC,+,0.00)
mm_69976.1	chr7	142377057	142377257	-	1	NA	NA	NA	-3411	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.000000	0.537313	
mm_100408.1	chr11	119422359	119422559	+	1	NA	NA	NA	31987	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.020000	0.512438	
mm_148176.1	chr18	78141985	78142185	-	1	NA	NA	NA	34	NM_001171011	108052	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0.015000	0.567164	-34(GAGCCTAAAGGG,-,0.00)
mm_144763.1	chr18	35771593	35771793	+	1	NA	NA	NA	134	NM_019912	56550	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0.115000	0.741294	73(GCGCATAAAGGG,-,0.00)
mm_159023.1	chr1	173203167	173203367	+	1	NA	NA	NA	-91	NM_001001809	258880	Mm.377732	NM_001001809	ENSMUSG00000046643	Olfr218	MOR267-3|Olfr1405-ps1|Olfr218-ps1	olfactory receptor 218	protein-coding	0.010000	0.442786	
mm_81806.1	chr9	116370035	116370235	+	1	NA	NA	NA	-194772	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.005000	0.368159	
mm_34235.1	chr4	141107003	141107203	+	1	NA	NA	NA	18758	NM_177867	329972	Mm.247201	NM_177867	ENSMUSG00000045004	Spata21	4933414G08	spermatogenesis associated 21	protein-coding	0.040000	0.611940	
mm_78388.1	chr9	28403445	28403645	+	1	NA	NA	NA	612276	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.130000	0.761194	
mm_68802.1	chr7	125491305	125491505	-	1	NA	NA	NA	137	NM_026330	67711	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.095000	0.641791	
mm_22519.1	chr3	7629122	7629322	+	1	NA	NA	NA	-15462	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.010000	0.417910	
mm_43825.1	chr5	142970420	142970620	+	1	NA	NA	NA	10165	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.035000	0.572139	
mm_29063.1	chr3	103791299	103791499	-	1	NA	NA	NA	-124	NM_010432	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.090000	0.706468	
mm_101106.1	chr11	11932468	11932668	-	1	NA	NA	NA	-34424	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.010000	0.532338	
mm_160267.1	chr7	113280621	113280821	+	1	NA	NA	NA	73256	NM_007489	11865	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0.035000	0.542289	
mm_154770.1	chrX	12615667	12615867	+	1	NA	NA	NA	28008	NM_027439	70495	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	0.010000	0.373134	
mm_147569.1	chr18	54992475	54992675	-	1	NA	NA	NA	-2395	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.015000	0.497512	
mm_29658.1	chr3	122551438	122551638	-	1	NA	NA	NA	-9857	NR_106117	102465764		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.000000	0.383085	
mm_39833.1	chr5	30853699	30853899	+	1	NA	NA	NA	-8008	NM_001310516	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.010000	0.562189	48(CCCCAGAAAAGC,-,0.00)
mm_133250.1	chr16	77261680	77261880	+	1	NA	NA	NA	-67548	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.000000	0.353234	
mm_100935.1	chr11	6520765	6520965	-	1	NA	NA	NA	93	NM_178440	246177	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0.015000	0.547264	
mm_115938.1	chr13	23621962	23622162	-	1	NA	NA	NA	496	NM_015787	50709	Mm.170587	NM_015787	ENSMUSG00000051627	Hist1h1e	H1-4|H1.4|H1e|H1f4|H1s-4|H1var2	histone cluster 1, H1e	protein-coding	0.050000	0.587065	
mm_170152.1	chr17	45570988	45571188	-	1	NA	NA	NA	2173	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.040000	0.552239	
mm_165068.1	chr19	44407407	44407607	-	1	NA	NA	NA	202	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.060000	0.587065	-87(CCCTTTAAAATC,+,0.00),-86(CCTTTAAAATCC,+,0.00)
mm_30336.1	chr3	151732219	151732419	-	1	NA	NA	NA	17640	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.010000	0.412935	
mm_79679.1	chr9	59750875	59751075	+	1	NA	NA	NA	-199	NM_173018	270163	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0.125000	0.746269	
mm_123849.1	chr14	70754456	70754656	-	1	NA	NA	NA	12072	NM_023045	65246	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|mKIAA0745	exportin 7	protein-coding	0.000000	0.288557	
mm_77452.1	chr8	121829446	121829646	-	1	NA	NA	NA	23	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.095000	0.611940	
mm_9677.1	chr1	178331850	178332050	-	1	NA	NA	NA	5834	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.015000	0.398010	
mm_26287.1	chr3	142506630	142506830	+	1	NA	NA	NA	9796	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.020000	0.427861	
mm_54581.1	chr6	38124420	38124620	-	1	NA	NA	NA	66	NM_080467	140494	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	0.005000	0.487562	
mm_95104.1	chr11	34048733	34048933	+	1	NA	NA	NA	1632	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.020000	0.447761	
mm_57345.1	chr6	124749413	124749613	-	1	NA	NA	NA	6974	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.030000	0.621891	
mm_32367.1	chr4	105258518	105258718	+	1	NA	NA	NA	101271	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.005000	0.442786	
mm_22438.1	chr2	181693449	181693649	-	1	NA	NA	NA	261	NM_001291206	56470	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0.060000	0.616915	
mm_95660.1	chr11	53771172	53771372	+	1	NA	NA	NA	799	NM_001159396	16362	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.020000	0.537313	
mm_61517.1	chr7	78913689	78913889	+	1	NA	NA	NA	24	NM_020583	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.030000	0.592040	
mm_44653.1	chr5	28210075	28210275	-	1	NA	NA	NA	-7	NM_001310511	269637	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.100000	0.582090	
mm_130191.1	chr15	94404208	94404408	-	1	NA	NA	NA	42	NM_001164785	223838	Mm.214132	NM_177431	ENSMUSG00000022449	Adamts20	Adamst20|bt	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20	protein-coding	0.160000	0.820896	
mm_103156.1	chr11	70408846	70409046	-	1	NA	NA	NA	1085	NM_029231	75273	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	0.010000	0.457711	
mm_38683.1	chr4	145067125	145067325	-	1	NA	NA	NA	123441	NM_001276502	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.020000	0.532338	
mm_128579.1	chr15	57912810	57913010	-	1	NA	NA	NA	711	NM_001167679	210544	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0.035000	0.527363	
mm_162807.1	chr10	77879985	77880185	+	1	NA	NA	NA	-13335	NR_015547	75188	Mm.348012	NM_029200	ENSMUSG00000096573	1700009J07Rik	4930535B06Rik	RIKEN cDNA 1700009J07 gene	ncRNA	0.000000	0.532338	
mm_138314.1	chr17	34661514	34661714	+	1	NA	NA	NA	-8921	NM_031176	81877	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	0.025000	0.532338	
mm_122267.1	chr14	34355292	34355492	-	1	NA	NA	NA	1	NM_183278	69134	Mm.27156	NM_183278	ENSMUSG00000043681	Fam25c	2200001I15Rik|Fam25	family with sequence similarity 25, member C	protein-coding	0.025000	0.592040	
mm_155050.1	chrX	42152274	42152474	+	1	NA	NA	NA	1673	NM_021465	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.020000	0.388060	
mm_61979.1	chr7	90887276	90887476	+	1	NA	NA	NA	-203410	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.055000	0.567164	
mm_154761.1	chrX	12005722	12005922	+	1	NA	NA	NA	74731	NM_175045	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.060000	0.656716	
mm_75591.1	chr8	61602925	61603125	-	1	NA	NA	NA	-11856	NM_001293774	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.005000	0.353234	
mm_28174.1	chr3	88000110	88000310	-	1	NA	NA	NA	146	NM_007529	12032	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0.150000	0.786070	
mm_22199.1	chr2	173348804	173349004	-	1	NA	NA	NA	-72371	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.010000	0.497512	
mm_131301.1	chr16	11420433	11420633	+	1	NA	NA	NA	14885	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.020000	0.492537	
mm_24560.1	chr3	93443553	93443753	+	1	NA	NA	NA	1323	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.065000	0.592040	
mm_21142.1	chr2	154220219	154220419	-	1	NA	NA	NA	-3423	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.020000	0.611940	
mm_116614.1	chr13	48871033	48871233	-	1	NA	NA	NA	-248	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.165000	0.830846	
mm_163731.1	chr13	119623748	119623948	+	1	NA	NA	NA	29	NM_020279	56838	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.010000	0.572139	
mm_52702.1	chr6	119336293	119336493	+	1	NA	NA	NA	-5627	NM_172492	211187	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	0.010000	0.567164	
mm_12676.1	chr2	75832038	75832238	+	1	NA	NA	NA	-39	NM_172666	228061	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.145000	0.766169	
mm_16593.1	chr2	4652014	4652214	-	1	NA	NA	NA	-28	NM_026045	67229	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0.090000	0.611940	
mm_102223.1	chr11	54909883	54910083	-	1	NA	NA	NA	7129	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.005000	0.487562	
mm_45922.1	chr5	89441581	89441781	-	1	NA	NA	NA	16217	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.010000	0.383085	
mm_137360.1	chr17	25366222	25366422	+	1	NA	NA	NA	-11	NM_010781	17229	Mm.7409	NM_010781	ENSMUSG00000033825	Tpsb2	AV011504|MMCP-6|Mcp-6|Mcp6|Mcpt6	tryptase beta 2	protein-coding	0.005000	0.502488	
mm_149048.1	chr19	8831598	8831798	+	1	NA	NA	NA	-5769	NM_001136064	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.005000	0.437811	
mm_8939.1	chr1	164437754	164437954	-	1	NA	NA	NA	20501	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.025000	0.388060	
mm_157240.1	chrX	17572123	17572323	-	1	NA	NA	NA	102	NM_001313745	72018	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	0.060000	0.636816	-18(TCCTTTAAAGTG,+,0.00),-17(CCTTTAAAGTGG,+,0.00)
mm_113912.1	chr13	49493532	49493732	+	1	NA	NA	NA	-11178	NM_001012324	407800	Mm.386931	NM_001012324	ENSMUSG00000043631	Ecm2	9030618O22Rik|BC065151|tenonectin	extracellular matrix protein 2, female organ and adipocyte specific	protein-coding	0.035000	0.492537	-52(TTCTTTAAAAGT,-,0.00),-51(TCTTTAAAAGTG,+,0.00)
mm_86397.1	chr9	123968542	123968742	-	1	NA	NA	NA	50	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.005000	0.467662	
mm_43757.1	chr5	140507639	140507839	+	1	NA	NA	NA	2130	NM_021528	59031	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0.005000	0.587065	
mm_124872.1	chr15	10215900	10216100	+	1	NA	NA	NA	-7906	NM_001253781	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.015000	0.452736	
mm_140530.1	chr17	6746764	6746964	-	1	NA	NA	NA	35916	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.015000	0.517413	
mm_119765.1	chr14	54173446	54173646	+	1	NA	NA	NA	80383	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.547264	
mm_112800.1	chr13	20472613	20472813	+	1	NA	NA	NA	-277	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.030000	0.512438	
mm_123693.1	chr14	69664980	69665180	-	1	NA	NA	NA	-27168	NR_105915	102465573		NR_105915	ENSMUSG00000098666	Mir6950	Gm27586|mmu-mir-6950	microRNA 6950	ncRNA	0.000000	0.492537	
mm_60907.1	chr7	46752256	46752456	+	1	NA	NA	NA	523	NM_011314	20209	Mm.200941	NM_011314	ENSMUSG00000057465	Saa2	AW111173|Saa-2|Saa1	serum amyloid A 2	protein-coding	0.000000	0.577114	
mm_89220.1	chr10	86874245	86874445	+	1	NA	NA	NA	95340	NM_175331	103466	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.020000	0.477612	
mm_12307.1	chr2	69113466	69113666	+	1	NA	NA	NA	-22234	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.010000	0.472637	
mm_124349.1	chr14	104459385	104459585	-	1	NA	NA	NA	8514	NM_011143	18996	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.040000	0.373134	
mm_154137.1	chr19	57360023	57360223	-	1	NA	NA	NA	776	NR_040316	320879	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	0.025000	0.487562	
mm_46290.1	chr5	100379060	100379260	-	1	NA	NA	NA	37074	NM_026969	69162	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	0.000000	0.427861	
mm_34494.1	chr4	148591999	148592199	+	1	NA	NA	NA	586	NM_009272	20810	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	0.060000	0.616915	
mm_153200.1	chr19	34629711	34629911	-	1	NA	NA	NA	10932	NM_053217	112419	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	0.000000	0.432836	
mm_117756.1	chr13	95961563	95961763	-	1	NA	NA	NA	-69741	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.040000	0.437811	
mm_97107.1	chr11	74649391	74649591	+	1	NA	NA	NA	-4	NM_001081158	74148	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.150000	0.746269	
mm_122981.1	chr14	54983314	54983514	-	1	NA	NA	NA	-7638	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.000000	0.507463	
mm_10996.1	chr2	26342189	26342389	+	1	NA	NA	NA	9821	NM_026828	52838	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	0.030000	0.587065	-35(TCCTATTTAAGC,-,0.00)
mm_27569.1	chr3	58637091	58637291	-	1	NA	NA	NA	16	NM_001081262	545527	Mm.357722	NM_001081262	ENSMUSG00000070471	Erich6	4932431H17Rik|Fam194a	glutamate rich 6	protein-coding	0.060000	0.582090	
mm_133111.1	chr16	65523211	65523411	+	1	NA	NA	NA	2682	NM_008849	18736	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.005000	0.417910	82(TCCCATATAGGC,-,0.00)
mm_78571.1	chr9	36481791	36481991	+	1	NA	NA	NA	6253	NM_001128510	671003	Mm.475847	NM_001128510	ENSMUSG00000090710	Gm9513	Pate-P|Pate11	predicted gene 9513	protein-coding	0.005000	0.308458	7(GGTTTTTAAAGG,-,0.00),8(GTTTTTAAAGGT,+,0.00)
mm_45284.1	chr5	64959087	64959287	-	1	NA	NA	NA	847	NM_011604	21899	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0.020000	0.398010	
mm_23430.1	chr3	59080878	59081078	+	1	NA	NA	NA	20843	NM_173398	229323	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	0.015000	0.492537	-34(TCTTATAAAAGG,-,0.00)
mm_94931.1	chr11	29692910	29693110	+	1	NA	NA	NA	112	NM_194052	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.075000	0.651741	
mm_63975.1	chr7	139953798	139953998	+	1	NA	NA	NA	3724	NR_106157	102465788		NR_106157	ENSMUSG00000105165	Mir7686	mmu-mir-7686	microRNA 7686	ncRNA	0.000000	0.348259	
mm_46737.1	chr5	110809972	110810172	-	1	NA	NA	NA	9	NM_009469	22241	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	0.110000	0.706468	
mm_11720.1	chr2	36249606	36249806	+	1	NA	NA	NA	19280	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.000000	0.358209	
mm_27279.1	chr3	41423366	41423566	-	1	NA	NA	NA	69733	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.030000	0.552239	
mm_146852.1	chr18	24111982	24112182	-	1	NA	NA	NA	9737	NM_172625	225280	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0.025000	0.572139	
mm_76165.1	chr8	82379988	82380188	-	1	NA	NA	NA	22498	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.000000	0.318408	-48(CTCTTGAAAAGC,-,0.00),35(CCCCTTAAAAAG,-,0.00),37(CCTTAAAAAGCA,+,0.00)
mm_106625.1	chr11	120852587	120852787	-	1	NA	NA	NA	-28140	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.025000	0.572139	
mm_102665.1	chr11	65002980	65003180	-	1	NA	NA	NA	24045	NM_023479	68626	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	0.000000	0.452736	
mm_69354.1	chr7	130354240	130354440	-	1	NA	NA	NA	-87532	NM_201601	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	0.075000	0.562189	
mm_43591.1	chr5	137758073	137758273	+	1	NA	NA	NA	12204	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.020000	0.631841	
mm_55380.1	chr6	58906976	58907176	-	1	NA	NA	NA	50	NM_021432	58243	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.085000	0.626866	
mm_21552.1	chr2	164075124	164075324	-	1	NA	NA	NA	1046	NM_021420	58231	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.015000	0.487562	
mm_33425.1	chr4	130047822	130048022	+	1	NA	NA	NA	82	NM_028266	107581	Mm.41860	NM_028266	ENSMUSG00000040690	Col16a1	2700007F12Rik|A530052M23Rik|AI838662|CA1F	collagen, type XVI, alpha 1	protein-coding	0.060000	0.666667	
mm_33856.1	chr4	135895088	135895288	+	1	NA	NA	NA	-1	NM_009924	12802	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0.015000	0.522388	
mm_22508.1	chr3	7576254	7576454	+	1	NA	NA	NA	36539	NM_001313890	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.005000	0.358209	
mm_163157.1	chr11	83789449	83789649	+	1	NA	NA	NA	35912	NM_145432	217026	Mm.117874	NM_145432	ENSMUSG00000000976	Heatr6	2700008B19Rik|BB135312|BB249351	HEAT repeat containing 6	protein-coding	0.035000	0.542289	
mm_120425.1	chr14	65501428	65501628	+	1	NA	NA	NA	-76056	NM_010932	18155	Mm.16347	NM_010932	ENSMUSG00000045731	Pnoc	N/OFQ|Npnc1|OFQ/N	prepronociceptin	protein-coding	0.015000	0.432836	
mm_144475.1	chr18	23891373	23891573	+	1	NA	NA	NA	-63215	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.000000	0.398010	
mm_162076.1	chrX	24500626	24500826	-	1	NA	NA	NA	-1563	NM_001100444	546272		NM_001100444	ENSMUSG00000084063	Gm5934	EG546272	predicted gene 5934	protein-coding	0.010000	0.462687	
mm_97427.1	chr11	78072550	78072750	+	1	NA	NA	NA	-355	NR_029556	387162		NR_029556	ENSMUSG00000065401	Mir144	Mirn144|mir-144|mmu-mir-144	microRNA 144	ncRNA	0.015000	0.572139	
mm_103501.1	chr11	76577609	76577809	-	1	NA	NA	NA	30	NM_198894	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.025000	0.611940	
mm_93283.1	chr10	96176521	96176721	-	1	NA	NA	NA	-49586	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.015000	0.522388	
mm_2330.1	chr1	92831400	92831600	+	1	NA	NA	NA	-186	NM_016696	14733	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.100000	0.731343	
mm_87601.1	chr10	57650867	57651067	+	1	NA	NA	NA	-14	NM_001039050	18768	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.005000	0.477612	
mm_17754.1	chr2	32742306	32742506	-	1	NA	NA	NA	-1390	NM_027529	70730	Mm.401360	NM_027529	ENSMUSG00000009551	6330409D20Rik	AA517851	RIKEN cDNA 6330409D20 gene	protein-coding	0.070000	0.656716	
mm_142464.1	chr17	45599514	45599714	-	1	NA	NA	NA	-11	NM_001199115	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.090000	0.686567	
mm_75178.1	chr8	36952087	36952287	-	1	NA	NA	NA	255	NM_001194940	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.030000	0.517413	
mm_88952.1	chr10	81364306	81364506	+	1	NA	NA	NA	1414	NM_001014836	432479	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.040000	0.532338	
mm_13440.1	chr2	105126693	105126893	+	1	NA	NA	NA	264	NM_144783	22431	Mm.389339	NM_144783	ENSMUSG00000016458	Wt1	D630046I19Rik|Wt-1	Wilms tumor 1 homolog	protein-coding	0.095000	0.711443	
mm_119261.1	chr14	33953950	33954150	+	1	NA	NA	NA	28	NM_015745	19661	Mm.436622	NM_015745	ENSMUSG00000041534	Rbp3	Irbp|Rbp-3	retinol binding protein 3, interstitial	protein-coding	0.010000	0.562189	
mm_94864.1	chr11	24077949	24078149	+	1	NA	NA	NA	-7	NM_016707	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.030000	0.552239	
mm_88256.1	chr10	73223649	73223849	+	1	NA	NA	NA	-137044	NR_040646	327768	Mm.417745	NR_040646		A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0.005000	0.353234	
mm_130786.1	chr15	101573798	101573998	-	1	NA	NA	NA	6	NM_133357	109052	Mm.106868	NM_133357	ENSMUSG00000022986	Krt75	4732468K03Rik|AA589387|K6hf|Krt2-6hf|Krtcap1	keratin 75	protein-coding	0.040000	0.572139	-42(GCCCATAAAAGT,-,0.00)
mm_77485.1	chr8	122551225	122551425	-	1	NA	NA	NA	4	NM_001037298	234839	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	0.145000	0.776119	-33(GAGCTTATAAAG,-,0.00),-31(GCTTATAAAGGC,+,0.00),-31(GCTTATAAAGGC,-,0.00)
mm_164985.1	chr19	10388993	10389193	+	1	NA	NA	NA	3	NM_173068	54525	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0.105000	0.641791	
mm_38923.1	chr4	150008932	150009132	-	1	NA	NA	NA	-9	NM_173371	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.130000	0.776119	
mm_51929.1	chr6	91473641	91473841	+	1	NA	NA	NA	-10	NM_028766	74122	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	0.075000	0.562189	
mm_2829.1	chr1	131161177	131161377	+	1	NA	NA	NA	8070	NM_010709	16865	Mm.276294	NM_010709	ENSMUSG00000026427	Eif2d	D1Ertd5e|Lgtn	eukaryotic translation initiation factor 2D	protein-coding	0.030000	0.572139	
mm_69830.1	chr7	141271662	141271862	-	1	NA	NA	NA	5024	NM_028069	72040	Mm.29080	NM_028069	ENSMUSG00000025497	Cdhr5	1810074H01Rik|AI481143|Mucdhl|Mupcdh	cadherin-related family member 5	protein-coding	0.000000	0.567164	
mm_18825.1	chr2	74659759	74659959	-	1	NA	NA	NA	-302	NM_007967	14029	Mm.25365	NM_007967	ENSMUSG00000001815	Evx2	Evx-2	even-skipped homeobox 2	protein-coding	0.060000	0.567164	-69(GCCCCTAAATGA,-,0.00)
mm_20208.1	chr2	125505867	125506067	-	1	NA	NA	NA	471	NM_007993	14118	Mm.271644	NM_007993	ENSMUSG00000027204	Fbn1	AI536462|B430209H23|Fib-1|Tsk	fibrillin 1	protein-coding	0.120000	0.686567	-95(CCATTAAGACCG,+,0.00)
mm_136299.1	chr16	91547527	91547727	-	1	NA	NA	NA	533	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.020000	0.512438	74(GATTTTATAGGC,+,0.00)
mm_69056.1	chr7	126884603	126884803	-	1	NA	NA	NA	264	NM_001163775	381921	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	0.090000	0.681592	
mm_165284.1	chr2	84018642	84018842	+	1	NA	NA	NA	-77516	NM_027964	71861	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.000000	0.517413	
mm_56537.1	chr6	99666707	99666907	-	1	NA	NA	NA	-36	NM_025829	66892	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.135000	0.800995	
mm_35122.1	chr4	11076086	11076286	-	1	NA	NA	NA	19	NM_001085493	76947	Mm.275265	NM_001085493	ENSMUSG00000050323	Ndufaf6	2310030N02Rik	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	protein-coding	0.085000	0.666667	
mm_30375.1	chr3	152209978	152210178	-	1	NA	NA	NA	5	NM_027287	67035	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0.165000	0.746269	
mm_127636.1	chr15	102471198	102471398	+	1	NA	NA	NA	666	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.050000	0.601990	
mm_15652.1	chr2	163203045	163203245	+	1	NA	NA	NA	-22309	NM_001098799	269389	Mm.207709	NM_001098799	ENSMUSG00000074607	Tox2	AI851523|AV026525|BI987407|Gcx1|RxHMG1	TOX high mobility group box family member 2	protein-coding	0.160000	0.820896	
mm_98263.1	chr11	88954167	88954367	+	1	NA	NA	NA	1175	NM_029023	74617	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	0.005000	0.407960	
mm_30743.1	chr4	14863933	14864133	+	1	NA	NA	NA	-186	NM_028264	72519	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360	transmembrane protein 55A	protein-coding	0.010000	0.567164	
mm_54927.1	chr6	48048760	48048960	-	1	NA	NA	NA	-746	NM_001081382	72306	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	0.130000	0.686567	
mm_2245.1	chr1	91056529	91056729	+	1	NA	NA	NA	3185	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.025000	0.547264	
mm_149334.1	chr19	10848533	10848733	+	1	NA	NA	NA	6089	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.020000	0.527363	
mm_101205.1	chr11	19019602	19019802	-	1	NA	NA	NA	-733	NM_010789	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.075000	0.587065	
mm_74203.1	chr8	123892567	123892767	+	1	NA	NA	NA	2108	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.055000	0.592040	
mm_11713.1	chr2	36237592	36237792	+	1	NA	NA	NA	7266	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.025000	0.552239	
mm_40385.1	chr5	52581260	52581460	+	1	NA	NA	NA	-15054	NM_144945	246316	Mm.44721	NM_144945	ENSMUSG00000039252	Lgi2	mKIAA1916	leucine-rich repeat LGI family, member 2	protein-coding	0.030000	0.552239	
mm_40005.1	chr5	32909245	32909445	+	1	NA	NA	NA	45624	NM_001170567	277854	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	0.000000	0.437811	
mm_105260.1	chr11	102356734	102356934	-	1	NA	NA	NA	8447	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.065000	0.577114	
mm_77175.1	chr8	111690662	111690862	-	1	NA	NA	NA	248	NM_025583	66473	Mm.34374	NM_025583	ENSMUSG00000031957	Ctrb1	2200008D09Rik|AI504462|Ctrb|Prt-2	chymotrypsinogen B1	protein-coding	0.010000	0.567164	
mm_137112.1	chr17	22424128	22424328	+	1	NA	NA	NA	26	NM_001331198	74149	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	0.040000	0.512438	
mm_170129.1	chr17	39847074	39847274	+	1	NA	NA	NA	4177	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.085000	0.577114	
mm_135421.1	chr16	45223630	45223830	-	1	NA	NA	NA	-607	NM_001037719	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.020000	0.417910	
mm_62758.1	chr7	112077743	112077943	+	1	NA	NA	NA	54337	NM_177249	74996	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	0.010000	0.407960	
mm_75674.1	chr8	67920868	67921068	-	1	NA	NA	NA	-10022	NM_030263	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.005000	0.368159	
mm_137186.1	chr17	23819865	23820065	+	1	NA	NA	NA	9144	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.070000	0.552239	
mm_11757.1	chr2	38511449	38511649	+	1	NA	NA	NA	-148	NM_021606	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.080000	0.661692	-61(TCTTATAAAGTC,+,0.00)
mm_17301.1	chr2	26300074	26300274	-	1	NA	NA	NA	-5617	NM_177841	329366	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding	0.005000	0.616915	
mm_51153.1	chr6	70718898	70719098	+	1	NA	NA	NA	73177	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.010000	0.432836	
mm_171991.1	chr5	97525614	97525814	-	1	NA	NA	NA	-68706	NM_010294	14626	Mm.61206	NM_010294	ENSMUSG00000050553	Gk2	GKTA|Gk-rs2	glycerol kinase 2	protein-coding	0.045000	0.611940	
mm_124986.1	chr15	21329303	21329503	+	1	NA	NA	NA	217951	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.005000	0.383085	
mm_43487.1	chr5	136919133	136919333	+	1	NA	NA	NA	87	NR_015555	66752	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	0.070000	0.592040	
mm_147751.1	chr18	61197611	61197811	-	1	NA	NA	NA	13885	NM_007885	13521	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	0.025000	0.507463	
mm_150024.1	chr19	29373460	29373660	+	1	NA	NA	NA	6122	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.030000	0.472637	
mm_49878.1	chr6	38595537	38595737	+	1	NA	NA	NA	39914	NM_001331223	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.020000	0.442786	
mm_154077.1	chr19	56547930	56548130	-	1	NA	NA	NA	192	NM_018831	55947	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0.060000	0.616915	
mm_94748.1	chr11	21105870	21106070	+	1	NA	NA	NA	14646	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.005000	0.278607	80(GTTTTTAAACAC,+,0.00)
mm_38162.1	chr4	135216319	135216519	-	1	NA	NA	NA	56341	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.015000	0.437811	
mm_79637.1	chr9	59542908	59543108	+	1	NA	NA	NA	3468	NM_010421	15211	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.000000	0.502488	
mm_166310.1	chr5	106705430	106705630	+	1	NA	NA	NA	-8700	NM_026856	52397	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.015000	0.467662	
mm_100146.1	chr11	116006433	116006633	+	1	NA	NA	NA	6186	NM_016905	14635	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0.035000	0.582090	
mm_971.1	chr1	58392495	58392695	+	1	NA	NA	NA	-541	NM_025824	66882	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.040000	0.552239	
mm_158775.1	chrX	167079997	167080197	-	1	NA	NA	NA	-9727	NM_001101606	667794	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	0.000000	0.353234	
mm_9814.1	chr1	182019901	182020101	-	1	NA	NA	NA	-21	NM_010135	13800	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	enabled homolog (Drosophila)	protein-coding	0.175000	0.845771	
mm_141422.1	chr17	29436868	29437068	-	1	NA	NA	NA	-54077	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.020000	0.577114	
mm_6800.1	chr1	84150829	84151029	-	1	NA	NA	NA	68032	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.373134	
mm_124160.1	chr14	93631237	93631437	-	1	NA	NA	NA	257551	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.005000	0.358209	-80(CTTTTTATAGTA,+,0.00)
mm_123622.1	chr14	68120986	68121186	-	1	NA	NA	NA	-2666	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.025000	0.537313	
mm_25769.1	chr3	126363831	126364031	+	1	NA	NA	NA	79	NM_173451	271970	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	0.065000	0.666667	
mm_166804.1	chr7	4464639	4464839	+	1	NA	NA	NA	4	NM_026146	67425	Mm.360392	NM_026146	ENSMUSG00000006154	Eps8l1	2310051G19Rik|4632407K17Rik|AW060268|DRC3|EPS8R1	EPS8-like 1	protein-coding	0.010000	0.616915	
mm_32163.1	chr4	100095735	100095935	+	1	NA	NA	NA	44	NM_001312690	26563	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding	0.060000	0.661692	
mm_50237.1	chr6	42351229	42351429	+	1	NA	NA	NA	1501	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.015000	0.552239	
mm_87155.1	chr10	36506874	36507074	+	1	NA	NA	NA	167	NM_001253356	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0.125000	0.691542	
mm_109904.1	chr12	7979208	7979408	-	1	NA	NA	NA	1631	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.030000	0.502488	
mm_32824.1	chr4	117550574	117550774	+	1	NA	NA	NA	309	NM_080469	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.045000	0.721393	
mm_42036.1	chr5	108388350	108388550	+	1	NA	NA	NA	77	NM_008806	18587	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0.015000	0.537313	
mm_126588.1	chr15	82343005	82343205	+	1	NA	NA	NA	1926	NM_177391	338368	Mm.444916	NM_177391	ENSMUSG00000049687	Fam109b	C920005C14Rik|IPIP27B|Ses2	family with sequence similarity 109, member B	protein-coding	0.000000	0.383085	4(ACCCTTATAAGA,-,0.00)
mm_108973.1	chr12	102562511	102562711	+	1	NA	NA	NA	7670	NM_007693	12652	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	0.015000	0.587065	
mm_60783.1	chr7	45566557	45566757	+	1	NA	NA	NA	-3496	NM_009737	12036	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.035000	0.611940	
mm_120608.1	chr14	70159474	70159674	+	1	NA	NA	NA	-72	NM_001004155	268759	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	0.045000	0.646766	
mm_120535.1	chr14	67233346	67233546	+	1	NA	NA	NA	154	NM_001276387	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.080000	0.606965	
mm_27346.1	chr3	50414788	50414988	-	1	NA	NA	NA	28725	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.353234	
mm_60756.1	chr7	45514505	45514705	+	1	NA	NA	NA	3	NM_001290998	56734	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0.015000	0.512438	
mm_50223.1	chr6	42350005	42350205	+	1	NA	NA	NA	277	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.160000	0.751244	
mm_119721.1	chr14	53945916	53946116	+	1	NA	NA	NA	307913	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.492537	
mm_98871.1	chr11	97799514	97799714	+	1	NA	NA	NA	-58	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.115000	0.731343	
mm_51795.1	chr6	88272304	88272504	+	1	NA	NA	NA	50136	NM_019964	56691	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	0.015000	0.557214	
mm_159983.1	chr6	113697416	113697616	+	1	NA	NA	NA	466	NM_001033463	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.170000	0.726368	
mm_18781.1	chr2	73637736	73637936	-	1	NA	NA	NA	-12096	NM_029716	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	0.020000	0.457711	
mm_153384.1	chr19	40376882	40377082	-	1	NA	NA	NA	25328	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.025000	0.557214	
mm_112486.1	chr13	5887003	5887203	+	1	NA	NA	NA	25614	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.010000	0.502488	
mm_81538.1	chr9	110244832	110245032	+	1	NA	NA	NA	1149	NM_001166273	29873	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding	0.050000	0.537313	
mm_87014.1	chr10	26892794	26892994	+	1	NA	NA	NA	120382	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.000000	0.467662	
mm_17522.1	chr2	29252745	29252945	-	1	NA	NA	NA	148	NR_029460	76220	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0.075000	0.701493	
mm_156777.1	chrX	161162924	161163124	+	1	NA	NA	NA	274	NM_001290651	107815	Mm.159173	NM_133194	ENSMUSG00000000037	Scml2	4932420G07Rik	sex comb on midleg-like 2 (Drosophila)	protein-coding	0.040000	0.616915	
mm_137041.1	chr17	17899530	17899730	+	1	NA	NA	NA	11806	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.010000	0.402985	
mm_68244.1	chr7	105481833	105482033	-	1	NA	NA	NA	264	NM_028444	109042	Mm.3124	NM_028444	ENSMUSG00000037060	Prkcdbp	3110015B12Rik|6330514M23Rik|SRBC	protein kinase C, delta binding protein	protein-coding	0.115000	0.721393	
mm_75502.1	chr8	53591505	53591705	-	1	NA	NA	NA	47460	NM_146208	234258	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0.025000	0.527363	
mm_45370.1	chr5	66022612	66022812	-	1	NA	NA	NA	-18427	NR_027961	231253	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.050000	0.587065	
mm_16013.1	chr2	167421598	167421798	+	1	NA	NA	NA	-12	NM_148929	77031	Mm.278924	NM_148929	ENSMUSG00000039463	Slc9a8	1200006P13Rik|6430709P13Rik|AI182282|NHE-8|NHE8	solute carrier family 9 (sodium/hydrogen exchanger), member 8	protein-coding	0.100000	0.706468	
mm_55165.1	chr6	51881156	51881356	-	1	NA	NA	NA	131293	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.015000	0.487562	
mm_143029.1	chr17	56609602	56609802	-	1	NA	NA	NA	69	NM_153152	224904	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0.085000	0.577114	
mm_3029.1	chr1	133694657	133694857	+	1	NA	NA	NA	-4649	NM_001159649	240754	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	0.000000	0.497512	
mm_73274.1	chr8	104591415	104591615	+	1	NA	NA	NA	47	NM_001024606	382051	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0.070000	0.606965	
mm_118119.1	chr13	104109444	104109644	-	1	NA	NA	NA	70	NM_029447	75805	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	0.095000	0.721393	
mm_59310.1	chr7	25282139	25282339	+	1	NA	NA	NA	60	NM_027882	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.145000	0.756219	
mm_32713.1	chr4	116173272	116173472	+	1	NA	NA	NA	0	NM_001099295	67323	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	0.020000	0.572139	
mm_133582.1	chr16	91407137	91407337	+	1	NA	NA	NA	1002	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.010000	0.527363	
mm_12830.1	chr2	80635132	80635332	+	1	NA	NA	NA	-3580	NM_027091	69482	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	0.030000	0.462687	-32(GCTTATATAACA,+,0.00)
mm_163355.1	chr12	25381919	25382119	+	1	NA	NA	NA	252845	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.010000	0.462687	
mm_122541.1	chr14	47568316	47568516	-	1	NA	NA	NA	18	NM_172599	100504663	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	0.070000	0.656716	
mm_105983.1	chr11	115612802	115613002	-	1	NA	NA	NA	67	NM_001243584	69674	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	0.090000	0.666667	
mm_118679.1	chr14	22091103	22091303	+	1	NA	NA	NA	71491	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.437811	
mm_93202.1	chr10	94791947	94792147	-	1	NA	NA	NA	103257	NM_029852	77048	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	0.010000	0.283582	
mm_12289.1	chr2	69022900	69023100	+	1	NA	NA	NA	-112800	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.005000	0.343284	
mm_151126.1	chr19	47918624	47918824	+	1	NA	NA	NA	575	NM_001001738	414801	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER|mKIAA1754	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	0.050000	0.552239	
mm_82927.1	chr9	35119040	35119240	-	1	NA	NA	NA	-2330	NM_009178	20443	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0.015000	0.497512	
mm_2406.1	chr1	93802059	93802259	+	1	NA	NA	NA	-225	NM_001105667	21915	Mm.250332	NM_023136	ENSMUSG00000026281	Dtymk	AU044245|CDC8|D10Ertd203e|TMPK|TYPK|Tmk|mtmk	deoxythymidylate kinase	protein-coding	0.050000	0.492537	
mm_120127.1	chr14	60177281	60177481	+	1	NA	NA	NA	51534	NR_030458	751526		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA	0.115000	0.721393	
mm_4020.1	chr1	165708118	165708318	+	1	NA	NA	NA	-124	NM_001038846	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.060000	0.611940	
mm_173300.1	chrY	54758160	54758360	+	1	NA	NA	NA	-455460	NM_201530	382301	Mm.304354	NM_201530	ENSMUSG00000101155	Sly	-	Sycp3 like Y-linked	protein-coding	0.035000	0.492537	
mm_46998.1	chr5	115341103	115341303	-	1	NA	NA	NA	-42	NM_029645	384281	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	0.120000	0.671642	
mm_57245.1	chr6	123283171	123283371	-	1	NA	NA	NA	6600	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.388060	-58(CTTTTTAGACTG,+,0.00),73(CTGTATAAAGAG,-,0.00)
mm_4496.1	chr1	173641370	173641570	+	1	NA	NA	NA	10611	NM_175026	236312	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	0.000000	0.398010	
mm_103983.1	chr11	84827205	84827405	-	1	NA	NA	NA	1698	NM_177564	192970	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	0.005000	0.447761	
mm_78564.1	chr9	35740932	35741132	+	1	NA	NA	NA	-17	NM_001167588	100312949	Mm.475848	NM_001167588	ENSMUSG00000091174	Gm17677	Pate-n|Pate10	predicted gene, 17677	protein-coding	0.000000	0.437811	
mm_69797.1	chr7	141168641	141168841	-	1	NA	NA	NA	-55	NM_001172101	107702	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.060000	0.626866	
mm_31563.1	chr4	57567757	57567957	+	1	NA	NA	NA	-391	NM_001304544	677884	Mm.331630	NM_001304544	ENSMUSG00000089945	Pakap	AF064781|Gm20459|Palm2-Akap2|Palm2Akap2|Palm2akap2	paralemmin A kinase anchor protein	protein-coding	0.080000	0.666667	
mm_61617.1	chr7	80091579	80091779	+	1	NA	NA	NA	-16422	NR_045695	100859962	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.010000	0.447761	
mm_71541.1	chr8	47334364	47334564	+	1	NA	NA	NA	17884	NM_175162	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.015000	0.487562	-98(GCCCATATAAGG,-,0.00),-96(CCATATAAGGTG,+,0.00)
mm_14328.1	chr2	129367257	129367457	+	1	NA	NA	NA	-2545	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.020000	0.467662	
mm_82365.1	chr9	14543493	14543693	-	1	NA	NA	NA	42974	NM_023153	66070	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	0.015000	0.432836	
mm_50224.1	chr6	42350202	42350402	+	1	NA	NA	NA	474	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.105000	0.691542	
mm_33407.1	chr4	129848364	129848564	+	1	NA	NA	NA	27756	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.005000	0.348259	
mm_144186.1	chr18	7868783	7868983	+	1	NA	NA	NA	51	NM_001282093	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.135000	0.731343	
mm_102379.1	chr11	58802136	58802336	-	1	NA	NA	NA	-276	NM_029283	75429	Mm.296819	NM_029283	ENSMUSG00000049154	Fam183b	3100002J23Rik|Theg6	family with sequence similarity 183, member B	protein-coding	0.015000	0.517413	
mm_151828.1	chr19	5661544	5661744	-	1	NA	NA	NA	2063	NM_001164482	20469	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0.005000	0.577114	
mm_14365.1	chr2	129616519	129616719	+	1	NA	NA	NA	23450	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.010000	0.333333	73(AAGTTTATAAGC,-,0.00)
mm_44662.1	chr5	28466947	28467147	-	1	NA	NA	NA	54	NM_009170	20423	Mm.57202	NM_009170	ENSMUSG00000002633	Shh	9530036O11Rik|Dsh|Hhg1|Hx|Hxl3|M100081	sonic hedgehog	protein-coding	0.045000	0.542289	
mm_115564.1	chr13	9764803	9765003	-	1	NA	NA	NA	53	NM_001347477	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.170000	0.800995	
mm_129363.1	chr15	77969671	77969871	-	1	NA	NA	NA	1053	NM_018749	55944	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	0.020000	0.512438	
mm_126139.1	chr15	78348057	78348257	+	1	NA	NA	NA	-442	NR_106137	102465776		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0.025000	0.487562	
mm_63262.1	chr7	126695876	126696076	+	1	NA	NA	NA	-24	NM_175103	66162	Mm.358692	NM_175103	ENSMUSG00000047721	Bola2	1110025L05Rik|BolA-2	bolA-like 2 (E. coli)	protein-coding	0.095000	0.666667	
mm_15186.1	chr2	154200259	154200459	+	1	NA	NA	NA	-21	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.010000	0.557214	
mm_161107.1	chr12	103738089	103738289	-	1	NA	NA	NA	0	NM_009244	20701	Mm.439692	NM_009244	ENSMUSG00000071178	Serpina1b	D12Ucla2|Dom2|PI2|Spi1-2	serine (or cysteine) preptidase inhibitor, clade A, member 1B	protein-coding	0.010000	0.522388	21(GCTTAAATACAG,+,0.00)
mm_5848.1	chr1	52971918	52972118	-	1	NA	NA	NA	-19178	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.000000	0.437811	
mm_23229.1	chr3	50414366	50414566	+	1	NA	NA	NA	29147	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.393035	
mm_123951.1	chr14	73525145	73525345	-	1	NA	NA	NA	15196	NM_026119	67381	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0.080000	0.606965	
mm_50009.1	chr6	41059315	41059515	+	1	NA	NA	NA	-23906	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.482587	
mm_117372.1	chr13	71963602	71963802	-	1	NA	NA	NA	21	NM_010573	16371	Mm.316056	NM_010573	ENSMUSG00000060969	Irx1	-	Iroquois related homeobox 1 (Drosophila)	protein-coding	0.135000	0.741294	
mm_103090.1	chr11	69920486	69920686	-	1	NA	NA	NA	44	NM_001166590	276770	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.090000	0.701493	
mm_152617.1	chr19	12435936	12436136	-	1	NA	NA	NA	8131	NM_019540	56093	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.005000	0.482587	
mm_52241.1	chr6	105531403	105531603	+	1	NA	NA	NA	-38835	NR_040297	100503536	Mm.366960	NR_040297	ENSMUSG00000108237	Gm19757	-	predicted gene, 19757	ncRNA	0.015000	0.462687	
mm_110384.1	chr12	40223273	40223473	-	1	NA	NA	NA	9	NR_045157	629820	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.090000	0.661692	
mm_133708.1	chr16	93368160	93368360	+	1	NA	NA	NA	-1460	NR_030429	791074		NR_030429	ENSMUSG00000076457	Mir802	Mirn802|mir-802|mmu-mir-802	microRNA 802	ncRNA	0.015000	0.398010	
mm_40918.1	chr5	75734727	75734927	+	1	NA	NA	NA	159836	NM_021099	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	KIT proto-oncogene receptor tyrosine kinase	protein-coding	0.045000	0.582090	
mm_59628.1	chr7	28155139	28155339	+	1	NA	NA	NA	-14509	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.035000	0.577114	
mm_35110.1	chr4	9652467	9652667	-	1	NA	NA	NA	-8850	NM_001177852	65973	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.005000	0.348259	
mm_15276.1	chr2	155246886	155247086	+	1	NA	NA	NA	10378	NM_001291108	67068	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	0.020000	0.477612	
mm_14608.1	chr2	136532098	136532298	+	1	NA	NA	NA	-123	NM_175667	319196	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0.075000	0.671642	
mm_94586.1	chr11	11701543	11701743	+	1	NA	NA	NA	11466	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.010000	0.383085	
mm_145102.1	chr18	44101729	44101929	+	1	NA	NA	NA	-2694	NM_030061	78242	Mm.99782	NM_030061	ENSMUSG00000061144	Spink12	9230117E20Rik	serine peptidase inhibitor, Kazal type 12	protein-coding	0.005000	0.368159	-42(GCCCCTAAAAAG,-,0.00)
mm_152102.1	chr19	6921719	6921919	-	1	NA	NA	NA	-11	NM_007953	26379	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	0.105000	0.691542	
mm_144802.1	chr18	36280459	36280659	+	1	NA	NA	NA	-603	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.030000	0.517413	
mm_171892.1	chr5	3893795	3893995	-	1	NA	NA	NA	38	NM_001013023	545725	Mm.99593	NM_172135	ENSMUSG00000040429	Mterf1a	4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b	mitochondrial transcription termination factor 1a	protein-coding	0.100000	0.676617	
mm_105450.1	chr11	104464711	104464911	-	1	NA	NA	NA	-22520	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.015000	0.437811	
mm_19715.1	chr2	104192442	104192642	-	1	NA	NA	NA	69773	NM_026634	68243	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0.065000	0.527363	
mm_108757.1	chr12	89045823	89046023	+	1	NA	NA	NA	92533	NM_172544	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.000000	0.383085	-68(GCCTATAGAGCA,+,0.00)
mm_63222.1	chr7	126323873	126324073	+	1	NA	NA	NA	44072	NR_106025	102466797		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.040000	0.457711	
mm_35828.1	chr4	47474091	47474291	-	1	NA	NA	NA	176	NM_019998	56737	Mm.22218	NM_019998	ENSMUSG00000039740	Alg2	1110018A23Rik|1300013N08Rik|ALPG2|CDGIi|MNCb-5081	asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase)	protein-coding	0.095000	0.616915	
mm_122529.1	chr14	47381531	47381731	-	1	NA	NA	NA	7771	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.015000	0.507463	
mm_73647.1	chr8	110919788	110919988	+	1	NA	NA	NA	23	NM_009179	20444	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	0.060000	0.731343	
mm_135368.1	chr16	44061383	44061583	-	1	NA	NA	NA	-33538	NM_001172107	207798	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.035000	0.537313	
mm_76887.1	chr8	105637278	105637478	-	1	NA	NA	NA	840	NM_181322	13018	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0.110000	0.696517	
mm_29762.1	chr3	127162461	127162661	-	1	NA	NA	NA	1256	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.045000	0.592040	
mm_9266.1	chr1	171632689	171632889	-	1	NA	NA	NA	9111	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.517413	
mm_51584.1	chr6	83794928	83795128	+	1	NA	NA	NA	28	NM_001347315	56174	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	0.085000	0.661692	
mm_86527.1	chr10	7824871	7825071	+	1	NA	NA	NA	-7499	NM_172785	237256	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	0.020000	0.437811	
mm_112109.1	chr12	112795620	112795820	-	1	NA	NA	NA	-13255	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.015000	0.621891	
mm_69290.1	chr7	128206253	128206453	-	1	NA	NA	NA	13	NM_009943	12862	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	0.020000	0.552239	66(GCCTCTAAAGGT,-,0.00)
mm_62604.1	chr7	105740188	105740388	+	1	NA	NA	NA	-2903	NM_133951	101867	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.035000	0.547264	
mm_107351.1	chr12	32820436	32820636	+	1	NA	NA	NA	201	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.115000	0.661692	
mm_55287.1	chr6	54566180	54566380	-	1	NA	NA	NA	102	NM_027268	69938	Mm.41557	NM_027268	ENSMUSG00000019124	Scrn1	2810019K23Rik|6330535A03Rik|AI852905|SES1|mKIAA0193	secernin 1	protein-coding	0.100000	0.706468	
mm_115560.1	chr13	9754066	9754266	-	1	NA	NA	NA	9644	NM_001347471	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.000000	0.432836	-72(CCATTTATAGAC,+,0.00)
mm_93050.1	chr10	88504063	88504263	-	1	NA	NA	NA	-193	NM_001146690	212862	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	0.060000	0.661692	
mm_95236.1	chr11	44617223	44617423	+	1	NA	NA	NA	-777	NM_001290711	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.025000	0.537313	
mm_47039.1	chr5	116021674	116021874	-	1	NA	NA	NA	2654	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.030000	0.537313	
mm_95272.1	chr11	45829008	45829208	+	1	NA	NA	NA	21025	NR_045876	100009664	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.030000	0.457711	
mm_166107.1	chr4	146932332	146932532	+	1	NA	NA	NA	-89418	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.080000	0.696517	
mm_95131.1	chr11	34314672	34314872	+	1	NA	NA	NA	-50	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.020000	0.402985	59(CAATATAAAGGG,-,0.00)
mm_167709.1	chr9	96649907	96650107	-	1	NA	NA	NA	-18504	NM_053268	114713	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.025000	0.567164	
mm_30781.1	chr4	19298158	19298358	+	1	NA	NA	NA	17408	NM_013927	30952	Mm.445778	NM_013927	ENSMUSG00000056494	Cngb3	CCNC2|CNG6|Cngbeta2	cyclic nucleotide gated channel beta 3	protein-coding	0.025000	0.398010	
mm_143087.1	chr17	57078405	57078605	-	1	NA	NA	NA	5	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.015000	0.631841	
mm_52285.1	chr6	108661893	108662093	+	1	NA	NA	NA	-1059	NR_104577	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.020000	0.348259	
mm_143463.1	chr17	70997891	70998091	-	1	NA	NA	NA	4542	NM_026064	67268	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0.015000	0.447761	-35(GCTTTAAAACTG,+,0.00)
mm_66389.1	chr7	44116176	44116376	-	1	NA	NA	NA	3603	NM_010114	13646	Mm.5193	NM_010114	ENSMUSG00000060177	Klk1b22	EGF-BP A|Egfbp-1|Egfbp1|Klk22|mGk-22	kallikrein 1-related peptidase b22	protein-coding	0.000000	0.487562	
mm_98644.1	chr11	96248498	96248698	+	1	NA	NA	NA	-3062	NR_037977	193022	Mm.169508	NR_037977		Gm53	-	predicted gene 53	ncRNA	0.035000	0.527363	
mm_129686.1	chr15	81421385	81421585	-	1	NA	NA	NA	-13212	NM_021317	57755	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	0.000000	0.402985	
mm_28798.1	chr3	96172323	96172523	-	1	NA	NA	NA	-83	NM_153053	107701	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	0.090000	0.646766	
mm_79479.1	chr9	56994487	56994687	+	1	NA	NA	NA	-381	NM_019651	56294	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	0.015000	0.432836	
mm_172873.1	chr9	42689440	42689640	-	1	NA	NA	NA	-217314	NM_173038	272589	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0.020000	0.462687	
mm_11021.1	chr2	26610590	26610790	+	1	NA	NA	NA	-6273	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.010000	0.417910	
mm_160450.1	chr8	105413497	105413697	+	1	NA	NA	NA	-25	NM_001170788	270091	Mm.212709	NM_001033371	ENSMUSG00000054320	Lrrc36	BC036564	leucine rich repeat containing 36	protein-coding	0.125000	0.776119	
mm_106427.1	chr11	119346736	119346936	-	1	NA	NA	NA	8674	NM_018822	27029	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	0.025000	0.577114	
mm_160368.1	chr8	27229361	27229561	-	1	NA	NA	NA	127	NM_013462	11556	Mm.278475	NM_013462	ENSMUSG00000031489	Adrb3	Adrb-3	adrenergic receptor, beta 3	protein-coding	0.020000	0.467662	
mm_107552.1	chr12	41150996	41151196	+	1	NA	NA	NA	127006	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.005000	0.432836	
mm_29977.1	chr3	133749436	133749636	-	1	NA	NA	NA	-205146	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.025000	0.507463	-34(AGCTTTAAGAGC,-,0.00),-33(GCTTTAAGAGCC,+,0.00)
mm_89049.1	chr10	82866531	82866731	+	1	NA	NA	NA	5	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.045000	0.567164	
mm_70898.1	chr8	25601499	25601699	+	1	NA	NA	NA	-2	NM_001308481	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.105000	0.726368	
mm_141193.1	chr17	27020533	27020733	-	1	NA	NA	NA	2598	NM_001251881	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.010000	0.532338	
mm_59655.1	chr7	28179953	28180153	+	1	NA	NA	NA	-263	NM_001271370	13549	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0.100000	0.786070	
mm_35214.1	chr4	19637106	19637306	-	1	NA	NA	NA	62140	NM_025476	66302	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	0.005000	0.328358	
mm_170211.1	chr17	70963593	70963793	+	1	NA	NA	NA	26823	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.010000	0.467662	
mm_96140.1	chr11	60941564	60941764	+	1	NA	NA	NA	9607	NM_008928	26397	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0.010000	0.587065	
mm_151731.1	chr19	4876823	4877023	-	1	NA	NA	NA	986	NM_013456	11474	Mm.5316	NM_013456	ENSMUSG00000006457	Actn3	-	actinin alpha 3	protein-coding	0.010000	0.616915	
mm_130082.1	chr15	89377009	89377209	-	1	NA	NA	NA	-72	NM_138302	72962	Mm.287977	NM_138302	ENSMUSG00000022615	Tymp	2900072D10Rik|Ecgf1|PD-ECGF|PDECGF|Pdgfec	thymidine phosphorylase	protein-coding	0.025000	0.512438	
mm_27408.1	chr3	51340470	51340670	-	1	NA	NA	NA	74	NM_001291059	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.170000	0.791045	
mm_119237.1	chr14	33351202	33351402	+	1	NA	NA	NA	59722	NM_001310452	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.150000	0.796020	
mm_100592.1	chr11	120958127	120958327	+	1	NA	NA	NA	9160	NM_001038654	80879	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0.060000	0.631841	
mm_16412.1	chr2	180042667	180042867	+	1	NA	NA	NA	284	NM_178750	269397	Mm.63068	NM_178750	ENSMUSG00000039086	Ss18l1	A230053O16Rik|CREST	SS18, nBAF chromatin remodeling complex subunit like 1	protein-coding	0.120000	0.716418	
mm_102407.1	chr11	59164438	59164638	-	1	NA	NA	NA	-793	NM_173785	216792	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	0.030000	0.457711	
mm_168787.1	chr12	19093139	19093339	-	1	NA	NA	NA	578729	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.005000	0.388060	
mm_149574.1	chr19	12827864	12828064	+	1	NA	NA	NA	29355	NM_134152	107321	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	0.000000	0.378109	
mm_50146.1	chr6	41543501	41543701	+	1	NA	NA	NA	21825	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.055000	0.626866	
mm_61222.1	chr7	64501536	64501736	+	1	NA	NA	NA	-70	NM_007461	11784	Mm.4657	NM_007461	ENSMUSG00000030519	Apba2	X11-like|X11L|XllL|mXllL	amyloid beta (A4) precursor protein-binding, family A, member 2	protein-coding	0.090000	0.726368	
mm_103233.1	chr11	70683260	70683460	-	1	NA	NA	NA	4745	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.020000	0.552239	
mm_81473.1	chr9	109931686	109931886	+	1	NA	NA	NA	12	NM_008633	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.125000	0.746269	
mm_166672.1	chr6	94086490	94086690	+	1	NA	NA	NA	150852	NR_130996	78178	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0.020000	0.447761	
mm_47548.1	chr5	124351140	124351340	-	1	NA	NA	NA	3388	NM_013812	13445	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0.020000	0.636816	
mm_154029.1	chr19	53424694	53424894	-	1	NA	NA	NA	-34221	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	0.050000	0.572139	
mm_135079.1	chr16	34262988	34263188	-	1	NA	NA	NA	250939	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.020000	0.577114	
mm_136627.1	chr17	5574858	5575058	+	1	NA	NA	NA	82358	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.005000	0.467662	
mm_51538.1	chr6	83195840	83196040	+	1	NA	NA	NA	9994	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.025000	0.577114	
mm_105998.1	chr11	115696488	115696688	-	1	NA	NA	NA	2946	NM_001313937	14784	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.015000	0.437811	
mm_37761.1	chr4	129684640	129684840	-	1	NA	NA	NA	-169	NR_105983	102465615		NR_105983	ENSMUSG00000098422	Mir7016	Gm27994|mmu-mir-7016	microRNA 7016	ncRNA	0.010000	0.487562	
mm_16443.1	chr2	180442172	180442372	+	1	NA	NA	NA	-18706	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.015000	0.547264	
mm_127908.1	chr15	9527983	9528183	-	1	NA	NA	NA	1793	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.015000	0.407960	
mm_65432.1	chr7	25367598	25367798	-	1	NA	NA	NA	2026	NM_001081375	72383	Mm.34382	NM_028219	ENSMUSG00000063651	Cnfn	2210418J09Rik	cornifelin	protein-coding	0.025000	0.532338	
mm_103671.1	chr11	79146293	79146493	-	1	NA	NA	NA	-39	NM_013571	16706	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb	kinase suppressor of ras 1	protein-coding	0.100000	0.716418	
mm_17009.1	chr2	18868191	18868391	-	1	NA	NA	NA	-66473	NR_131254	66774	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.020000	0.502488	
mm_153887.1	chr19	46961854	46962054	-	1	NA	NA	NA	397	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.125000	0.756219	
mm_163516.1	chr12	114048680	114048880	-	1	NA	NA	NA	420686	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.005000	0.457711	
mm_80880.1	chr9	98991700	98991900	+	1	NA	NA	NA	5427	NM_011810	23873	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0.015000	0.477612	
mm_76678.1	chr8	93972005	93972205	-	1	NA	NA	NA	40535	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.010000	0.293532	-79(ACGTATTTAAGG,-,0.00)
mm_147610.1	chr18	56974041	56974241	-	1	NA	NA	NA	1238	NM_029909	77422	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	0.000000	0.462687	
mm_162681.1	chr10	13445983	13446183	-	1	NA	NA	NA	28313	NM_001195065	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.005000	0.417910	
mm_130064.1	chr15	89190439	89190639	-	1	NA	NA	NA	-5002	NR_105923	102465578		NR_105923	ENSMUSG00000098663	Mir6958	Gm27581|mmu-mir-6958	microRNA 6958	ncRNA	0.015000	0.512438	
mm_102728.1	chr11	67242965	67243165	-	1	NA	NA	NA	5253	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.010000	0.442786	
mm_48586.1	chr5	143732370	143732570	-	1	NA	NA	NA	-190	NM_029749	76800	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0.145000	0.741294	
mm_131631.1	chr16	20186447	20186647	+	1	NA	NA	NA	-10313	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.005000	0.497512	
mm_127448.1	chr15	101270563	101270763	+	1	NA	NA	NA	3817	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.010000	0.611940	
mm_78757.1	chr9	43265314	43265514	+	1	NA	NA	NA	5535	NM_001243261	235302	Mm.135745	NM_001243261	ENSMUSG00000095385	D630033O11Rik	Gm588	RIKEN cDNA D630033O11 gene	protein-coding	0.020000	0.537313	
mm_72936.1	chr8	91318018	91318218	+	1	NA	NA	NA	4593	NM_011936	26383	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	0.000000	0.398010	
mm_168053.1	chrY	90812367	90812567	+	1	NA	NA	NA	26939	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.502488	
mm_28450.1	chr3	90514275	90514475	-	1	NA	NA	NA	-45	NM_011309	20193	Mm.24662	NM_011309	ENSMUSG00000044080	S100a1	AI266795|S100|S100a	S100 calcium binding protein A1	protein-coding	0.035000	0.587065	
mm_29383.1	chr3	108844963	108845163	-	1	NA	NA	NA	-4561	NM_011504	20912	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.005000	0.497512	
mm_64290.1	chr7	141857553	141857753	+	1	NA	NA	NA	18581	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.015000	0.547264	
mm_70153.1	chr7	143464125	143464325	-	1	NA	NA	NA	-3175	NM_001161624	12577	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.010000	0.527363	-35(AGCTTTAAGAGC,-,0.00),-34(GCTTTAAGAGCC,+,0.00)
mm_132202.1	chr16	32550246	32550446	+	1	NA	NA	NA	54065	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.020000	0.601990	
mm_163003.1	chr11	34506980	34507180	+	1	NA	NA	NA	192258	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.005000	0.427861	
mm_87207.1	chr10	39732069	39732269	+	1	NA	NA	NA	9	NM_011264	19714	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	0.120000	0.701493	
mm_167469.1	chr8	126152692	126152892	-	1	NA	NA	NA	-145787	NM_175434	210027	Mm.405238	NM_175434	ENSMUSG00000057060	Slc35f3	B230375D17Rik	solute carrier family 35, member F3	protein-coding	0.025000	0.388060	31(GCCTAGAAATGG,-,0.00)
mm_150683.1	chr19	42068613	42068813	+	1	NA	NA	NA	16485	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	0.015000	0.577114	
mm_56292.1	chr6	91493099	91493299	-	1	NA	NA	NA	19448	NM_028766	74122	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	0.045000	0.562189	
mm_14466.1	chr2	131262416	131262616	+	1	NA	NA	NA	16	NM_153501	74450	Mm.101264	NM_153501	ENSMUSG00000037514	Pank2	4933409I19Rik|AI642621	pantothenate kinase 2	protein-coding	0.130000	0.751244	
mm_99074.1	chr11	99385494	99385694	+	1	NA	NA	NA	3770	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.015000	0.368159	
mm_156053.1	chrX	109095447	109095647	+	1	NA	NA	NA	140	NM_019989	56726	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	0.035000	0.557214	1(CCTTTTCAAGAC,+,0.00)
mm_140916.1	chr17	24170669	24170869	-	1	NA	NA	NA	-1340	NM_009729	11984	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0.010000	0.497512	24(CAGTTTAAAGGG,-,0.00)
mm_8995.1	chr1	165709658	165709858	-	1	NA	NA	NA	-1664	NM_001038846	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.020000	0.542289	0(CCTTAAAGACTC,+,0.00)
mm_100639.1	chr11	121805388	121805588	+	1	NA	NA	NA	-24730	NM_029049	74675	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.000000	0.328358	
mm_95626.1	chr11	53584283	53584483	+	1	NA	NA	NA	17014	NM_001290806	16568	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	0.030000	0.462687	
mm_65417.1	chr7	25248345	25248545	-	1	NA	NA	NA	2313	NM_010155	13875	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.030000	0.641791	
mm_87453.1	chr10	51483539	51483739	+	1	NA	NA	NA	3027	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.000000	0.368159	-79(CTTTTTATATTC,+,0.00),-28(GCTTTAATATTC,+,0.00)
mm_54838.1	chr6	42586267	42586467	-	1	NA	NA	NA	11005	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.412935	
mm_1515.1	chr1	72711145	72711345	+	1	NA	NA	NA	-15	NM_009084	19981	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0.100000	0.567164	
mm_85354.1	chr9	103211863	103212063	-	1	NA	NA	NA	-9898	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.020000	0.547264	
mm_64398.1	chr7	142500137	142500337	+	1	NA	NA	NA	1401	NM_001347551	21957	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	0.005000	0.532338	-33(CTCCTTATAAAC,-,0.00),-31(CCTTATAAACGC,+,0.00)
mm_133914.1	chr16	97557700	97557900	+	1	NA	NA	NA	21717	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.005000	0.412935	
mm_133486.1	chr16	90220526	90220726	+	1	NA	NA	NA	-116	NM_011434	20655	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.100000	0.676617	
mm_1686.1	chr1	74884635	74884835	+	1	NA	NA	NA	673	NM_153111	260298	Mm.150496	NM_153111	ENSMUSG00000055197	Fev	Pet-1|Pet1|mPet-1	FEV (ETS oncogene family)	protein-coding	0.065000	0.577114	-34(CCTTATAAAACC,+,0.00)
mm_33712.1	chr4	133816187	133816387	+	1	NA	NA	NA	58444	NM_001285506	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.020000	0.457711	
mm_17996.1	chr2	38166063	38166263	-	1	NA	NA	NA	121221	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.025000	0.427861	
mm_47542.1	chr5	124263304	124263504	-	1	NA	NA	NA	-13644	NM_011256	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.015000	0.542289	
mm_160866.1	chr11	61720623	61720823	-	1	NA	NA	NA	76	NM_001033227	109342	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0.005000	0.542289	
mm_162653.1	chr10	3859570	3859770	+	1	NA	NA	NA	-12997	NM_001033253	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.020000	0.417910	
mm_113751.1	chr13	44731233	44731433	+	1	NA	NA	NA	62	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.050000	0.512438	-96(TTGTATAAAAGC,-,0.00),-81(GTCCATTTAAAG,-,0.00),-79(CCATTTAAAGTT,+,0.00)
mm_96723.1	chr11	69666409	69666609	+	1	NA	NA	NA	-339	NR_110993	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.005000	0.467662	
mm_56520.1	chr6	99516768	99516968	-	1	NA	NA	NA	4125	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.015000	0.318408	
mm_75664.1	chr8	66486446	66486646	-	1	NA	NA	NA	-39	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.065000	0.577114	
mm_99859.1	chr11	109365026	109365226	+	1	NA	NA	NA	-1472	NR_038097	100036768	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	OTTMUSG00000003456	predicted gene 11696	ncRNA	0.025000	0.517413	
mm_162940.1	chr10	128439056	128439256	+	1	NA	NA	NA	-19524	NR_106183	102465894		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	0.025000	0.527363	
mm_141251.1	chr17	27565618	27565818	-	1	NA	NA	NA	9	NM_001002895	106672	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251	expressed sequence AI413582	protein-coding	0.090000	0.711443	
mm_110479.1	chr12	51858238	51858438	-	1	NA	NA	NA	-28802	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.015000	0.388060	
mm_117056.1	chr13	58402034	58402234	-	1	NA	NA	NA	35	NM_001301343	15387	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.155000	0.716418	
mm_101385.1	chr11	23895082	23895282	-	1	NA	NA	NA	88	NM_172555	216578	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0.070000	0.562189	
mm_81708.1	chr9	111311477	111311677	+	1	NA	NA	NA	-162	NM_001164659	320429	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	0.110000	0.726368	
mm_105593.1	chr11	106736381	106736581	-	1	NA	NA	NA	-14745	NM_001271375	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.015000	0.452736	-86(CCCTTTAAAAAG,+,0.00),-86(CCCTTTAAAAAG,-,0.00),-85(CCTTTAAAAAGA,+,0.00),-84(CTTTAAAAAGAG,+,0.00)
mm_5635.1	chr1	40437012	40437212	-	1	NA	NA	NA	-2517	NM_001025602	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.010000	0.427861	
mm_42315.1	chr5	114883256	114883456	+	1	NA	NA	NA	-13578	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.045000	0.577114	
mm_780.1	chr1	44652354	44652554	+	1	NA	NA	NA	92495	NR_040602	75066	Mm.416932	NR_040602	ENSMUSG00000101701	4930521E06Rik	-	RIKEN cDNA 4930521E06 gene	ncRNA	0.000000	0.268657	
mm_86075.1	chr9	114778882	114779082	-	1	NA	NA	NA	3011	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.020000	0.492537	
mm_83795.1	chr9	52677769	52677969	-	1	NA	NA	NA	1568	NM_178906	330941	Mm.335160	NM_177907	ENSMUSG00000078307	AI593442	E130102D23	expressed sequence AI593442	protein-coding	0.040000	0.636816	
mm_43435.1	chr5	136089574	136089774	+	1	NA	NA	NA	5758	NM_001039103	54153	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.030000	0.507463	
mm_131340.1	chr16	13400981	13401181	+	1	NA	NA	NA	42660	NM_153588	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.010000	0.502488	
mm_138290.1	chr17	34627715	34627915	+	1	NA	NA	NA	201	NM_001302394	54397	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	0.055000	0.611940	
mm_78385.1	chr9	28403217	28403417	+	1	NA	NA	NA	612048	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.100000	0.706468	
mm_32770.1	chr4	116693988	116694188	+	1	NA	NA	NA	-8066	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.005000	0.417910	
mm_15040.1	chr2	152804734	152804934	+	1	NA	NA	NA	25883	NM_001289716	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.005000	0.542289	
mm_146995.1	chr18	34370941	34371141	-	1	NA	NA	NA	2374	NM_007874	13476	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0.005000	0.338308	
mm_127689.1	chr15	102981490	102981690	+	1	NA	NA	NA	4558	NM_008272	15427	Mm.4765	NM_008272	ENSMUSG00000036139	Hoxc9	Hox-3.2	homeobox C9	protein-coding	0.050000	0.442786	
mm_79721.1	chr9	61509623	61509823	+	1	NA	NA	NA	137357	NM_001083927	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.045000	0.621891	
mm_152406.1	chr19	10604210	10604410	-	1	NA	NA	NA	-52	NM_145496	225913	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	0.030000	0.552239	
mm_105074.1	chr11	100762834	100763034	-	1	NA	NA	NA	-3	NM_010410	15171	Mm.10096	NM_010410	ENSMUSG00000045471	Hcrt	PPOX	hypocretin	protein-coding	0.020000	0.522388	
mm_150489.1	chr19	39007043	39007243	+	1	NA	NA	NA	124	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.000000	0.482587	
mm_137067.1	chr17	20661709	20661909	+	1	NA	NA	NA	-25699	NM_134191	171225	Mm.377184	NM_134191	ENSMUSG00000042848	Vmn1r226	V1re2	vomeronasal 1 receptor 226	protein-coding	0.000000	0.383085	
mm_91377.1	chr10	30552054	30552254	-	1	NA	NA	NA	48595	NM_028604	73681	Mm.294503	NM_028604	ENSMUSG00000019792	Trmt11	2410075D05Rik|3110045I18Rik|AW213713	tRNA methyltransferase 11	protein-coding	0.005000	0.358209	
mm_77425.1	chr8	121083825	121084025	-	1	NA	NA	NA	-461	NM_010426	15227	Mm.33897	NM_010426	ENSMUSG00000042812	Foxf1	AI450827|FREAC1|Foxf1a|Freac-1|HFH-8|Hfh8	forkhead box F1	protein-coding	0.125000	0.761194	
mm_162922.1	chr10	121034057	121034257	+	1	NA	NA	NA	153	NM_011915	24117	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0.060000	0.636816	
mm_83477.1	chr9	45828615	45828815	-	1	NA	NA	NA	-77	NM_001081373	214552	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	0.040000	0.547264	
mm_73359.1	chr8	105566079	105566279	+	1	NA	NA	NA	-139	NM_013477	11972	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0.080000	0.616915	
mm_114151.1	chr13	55379074	55379274	+	1	NA	NA	NA	9442	NM_016758	51791	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	0.025000	0.606965	
mm_62220.1	chr7	98486798	98486998	+	1	NA	NA	NA	-7324	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.010000	0.542289	
mm_37791.1	chr4	130519573	130519773	-	1	NA	NA	NA	54363	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.035000	0.417910	
mm_131688.1	chr16	20678543	20678743	+	1	NA	NA	NA	-5613	NR_028530	100217430		NR_028530		Snord66	MBII-142|snoRNA142	small nucleolar RNA, C/D box 66	snoRNA	0.020000	0.502488	
mm_72799.1	chr8	87458337	87458537	+	1	NA	NA	NA	14155	NM_019626	12404	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0.005000	0.482587	
mm_137053.1	chr17	17928134	17928334	+	1	NA	NA	NA	40410	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.000000	0.388060	
mm_170501.1	chr19	24290104	24290304	-	1	NA	NA	NA	-9618	NM_008044	14297	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	0.035000	0.547264	
mm_159978.1	chr6	113392523	113392723	+	1	NA	NA	NA	126	NM_133923	101100	Mm.388573	NM_133923	ENSMUSG00000030276	Ttll3	4833441J24Rik|AI450050	tubulin tyrosine ligase-like family, member 3	protein-coding	0.100000	0.726368	
mm_148866.1	chr19	6418672	6418872	+	1	NA	NA	NA	34	NM_001205234	18190	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0.115000	0.721393	
mm_328.1	chr1	24753519	24753719	+	1	NA	NA	NA	74701	NM_001310483	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.015000	0.378109	
mm_23411.1	chr3	58517395	58517595	+	1	NA	NA	NA	-8326	NM_001005509	229317	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	0.020000	0.482587	
mm_42847.1	chr5	122182086	122182286	+	1	NA	NA	NA	23907	NM_013636	19047	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	0.025000	0.497512	
mm_147874.1	chr18	64488962	64489162	-	1	NA	NA	NA	4	NM_007998	14151	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0.125000	0.771144	
mm_104447.1	chr11	95028656	95028856	-	1	NA	NA	NA	12615	NM_133667	18604	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	0.015000	0.552239	
mm_160740.1	chr10	79973604	79973804	+	1	NA	NA	NA	2980	NM_130455	170483	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	0.020000	0.532338	
mm_68110.1	chr7	102062387	102062587	-	1	NA	NA	NA	2645	NM_029211	75212	Mm.101141	NM_029211	ENSMUSG00000070426	Rnf121	4930544L10Rik	ring finger protein 121	protein-coding	0.005000	0.388060	
mm_20459.1	chr2	129365939	129366139	-	1	NA	NA	NA	-3863	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.010000	0.502488	
mm_56513.1	chr6	99403958	99404158	-	1	NA	NA	NA	31287	NM_053202	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.000000	0.328358	
mm_9568.1	chr1	173979529	173979729	-	1	NA	NA	NA	3215	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.000000	0.268657	-9(ATCTTTATAAGG,-,0.00),-7(CTTTATAAGGGT,+,0.00)
mm_162683.1	chr10	13966013	13966213	+	1	NA	NA	NA	-266	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.055000	0.676617	
mm_128566.1	chr15	56694440	56694640	-	1	NA	NA	NA	6	NM_008216	15117	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding	0.030000	0.577114	-32(TCCTATTAAAAC,-,0.00)
mm_135755.1	chr16	56016946	56017146	-	1	NA	NA	NA	12671	NM_001024622	76302	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	0.005000	0.273632	
mm_59586.1	chr7	28129707	28129907	+	1	NA	NA	NA	341	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.005000	0.552239	
mm_49057.1	chr6	5110558	5110758	+	1	NA	NA	NA	83288	NM_011134	18979	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.035000	0.547264	
mm_86078.1	chr9	114781297	114781497	-	1	NA	NA	NA	596	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.085000	0.661692	
mm_43438.1	chr5	136091146	136091346	+	1	NA	NA	NA	7330	NM_001039103	54153	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.020000	0.582090	
mm_124512.1	chr14	121929282	121929482	-	1	NA	NA	NA	-13608	NM_182806	110168	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	0.015000	0.427861	
mm_50978.1	chr6	62051985	62052185	+	1	NA	NA	NA	-871275	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA	0.005000	0.383085	
mm_154228.1	chr19	59943517	59943717	-	1	NA	NA	NA	37	NM_001164367	74998	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	0.135000	0.771144	
mm_149185.1	chr19	9899631	9899831	+	1	NA	NA	NA	-198	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.085000	0.552239	
mm_49312.1	chr6	18170669	18170869	+	1	NA	NA	NA	82	NM_021050	12638	Mm.15621	NM_021050	ENSMUSG00000041301	Cftr	AW495489|Abcc7	cystic fibrosis transmembrane conductance regulator	protein-coding	0.030000	0.502488	
mm_14757.1	chr2	144738320	144738520	+	1	NA	NA	NA	-85246	NM_025490	66328	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	0.015000	0.522388	
mm_82677.1	chr9	22132169	22132369	-	1	NA	NA	NA	-404	NM_001102404	11433	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.035000	0.562189	
mm_60709.1	chr7	45240990	45241190	+	1	NA	NA	NA	337	NM_001324535	381884	Mm.490944	NM_001324535	ENSMUSG00000094152	Slc6a16	Gm1084	solute carrier family 6, member 16	protein-coding	0.060000	0.661692	
mm_131090.1	chr16	4886114	4886314	+	1	NA	NA	NA	114	NM_001252437	17237	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.120000	0.756219	
mm_52686.1	chr6	118058091	118058291	+	1	NA	NA	NA	-8194	NM_027526	70727	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	0.000000	0.308458	
mm_55218.1	chr6	52226081	52226281	-	1	NA	NA	NA	1189	NM_010456	15405	Mm.4694	NM_010456	ENSMUSG00000038227	Hoxa9	D6a9|Hox-1.7	homeobox A9	protein-coding	0.090000	0.641791	
mm_155104.1	chrX	48343667	48343867	+	1	NA	NA	NA	2409	NM_178782	320376	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	0.075000	0.636816	
mm_18800.1	chr2	73892447	73892647	-	1	NA	NA	NA	92	NM_001284371	11909	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0.070000	0.616915	-35(GGCCTTTAAAGT,-,0.00),-34(GCCTTTAAAGTG,+,0.00),-33(CCTTTAAAGTGC,+,0.00)
mm_82624.1	chr9	21809815	21810015	-	1	NA	NA	NA	85	NR_106051	102465657		NR_106051	ENSMUSG00000098473	Mir7083	Gm27888|mmu-mir-7083	microRNA 7083	ncRNA	0.025000	0.606965	
mm_24781.1	chr3	95540089	95540289	+	1	NA	NA	NA	13403	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.010000	0.363184	
mm_56616.1	chr6	112659823	112660023	-	1	NA	NA	NA	36747	NM_021385	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.005000	0.467662	
mm_55100.1	chr6	49829404	49829604	-	1	NA	NA	NA	6794	NM_023456	109648	Mm.154796	NM_023456	ENSMUSG00000029819	Npy	0710005A05Rik	neuropeptide Y	protein-coding	0.005000	0.378109	
mm_75083.1	chr8	33916313	33916513	-	1	NA	NA	NA	13450	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.020000	0.442786	82(GATTATTTAAGG,-,0.00)
mm_31091.1	chr4	41755139	41755339	+	1	NA	NA	NA	11	NM_016658	14430	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	0.045000	0.532338	
mm_67638.1	chr7	84409938	84410138	-	1	NA	NA	NA	0	NM_007488	11864	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding	0.165000	0.791045	
mm_6644.1	chr1	79440006	79440206	-	1	NA	NA	NA	-16	NM_001310680	20254	Mm.5038	NM_009129	ENSMUSG00000050711	Scg2	Chgc|SgII	secretogranin II	protein-coding	0.070000	0.537313	-73(CGCTTTAAAAAA,-,0.00),48(CTCTCTATAAGC,-,0.00)
mm_40181.1	chr5	36203922	36204122	+	1	NA	NA	NA	1	NM_175249	76943	Mm.44242	NM_175249	ENSMUSG00000043430	Psapl1	2310020A21Rik	prosaposin-like 1	protein-coding	0.020000	0.626866	
mm_73928.1	chr8	119862167	119862367	+	1	NA	NA	NA	-38	NM_146219	234796	Mm.86446	NM_146219	ENSMUSG00000031828	Klhl36	-	kelch-like 36	protein-coding	0.095000	0.721393	
mm_23321.1	chr3	53463602	53463802	+	1	NA	NA	NA	-115	NM_173382	212127	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	0.095000	0.691542	-35(GGGCATTTAGGG,-,0.00)
mm_172858.1	chr9	40491994	40492194	+	1	NA	NA	NA	-36330	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.035000	0.522388	
mm_134284.1	chr16	14208196	14208396	-	1	NA	NA	NA	45021	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.005000	0.512438	
mm_23404.1	chr3	58414619	58414819	+	1	NA	NA	NA	-1	NM_001347233	72033	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.150000	0.761194	
mm_71322.1	chr8	44935900	44936100	+	1	NA	NA	NA	-14208	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.075000	0.606965	
mm_38694.1	chr4	145213729	145213929	-	1	NA	NA	NA	-18824	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.005000	0.467662	
mm_1140.1	chr1	60704893	60705093	+	1	NA	NA	NA	-41395	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.030000	0.487562	
mm_110862.1	chr12	73508581	73508781	-	1	NA	NA	NA	37714	NM_178715	238257	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	0.025000	0.432836	
mm_157157.1	chrX	9463709	9463909	-	1	NA	NA	NA	5515	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.343284	
mm_21591.1	chr2	164237439	164237639	-	1	NA	NA	NA	802	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.005000	0.442786	
mm_16294.1	chr2	174284518	174284718	+	1	NA	NA	NA	298	NM_022000	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.055000	0.597015	
mm_35170.1	chr4	14826319	14826519	-	1	NA	NA	NA	168	NM_152812	72201	Mm.387724	NM_152812	ENSMUSG00000040550	Otud6b	2600013N14Rik|AU015433	OTU domain containing 6B	protein-coding	0.075000	0.681592	
mm_17821.1	chr2	33855069	33855269	-	1	NA	NA	NA	32777	NM_175184	72543	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.010000	0.447761	
mm_131194.1	chr16	7409688	7409888	+	1	NA	NA	NA	339953	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.030000	0.412935	
mm_71946.1	chr8	70376515	70376715	+	1	NA	NA	NA	3067	NM_016685	12845	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	0.070000	0.651741	
mm_118590.1	chr14	20640975	20641175	+	1	NA	NA	NA	15465	NM_021508	59011	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0.130000	0.621891	
mm_89850.1	chr10	107271609	107271809	+	1	NA	NA	NA	-122	NM_001039354	108030	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding	0.060000	0.626866	
mm_73578.1	chr8	109778792	109778992	+	1	NA	NA	NA	309	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0.120000	0.706468	
mm_126374.1	chr15	80165579	80165779	+	1	NA	NA	NA	-8042	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.005000	0.522388	57(AGGTATATAAGA,-,0.00)
mm_68945.1	chr7	126503541	126503741	-	1	NA	NA	NA	-339	NM_183020	233871	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.110000	0.696517	-1(CAGCATTTAAGG,-,0.00),1(GCATTTAAGGTG,+,0.00)
mm_21165.1	chr2	154613298	154613498	-	1	NA	NA	NA	30	NM_199304	228807	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	0.155000	0.786070	
mm_67588.1	chr7	83642156	83642356	-	1	NA	NA	NA	10239	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.005000	0.402985	
mm_20948.1	chr2	151645094	151645294	-	1	NA	NA	NA	-12601	NM_001291076	241727	Mm.39312	NM_198214	ENSMUSG00000027457	Snph	6430515A01|AW045671|AW556958|AW743098|mKIAA0374	syntaphilin	protein-coding	0.005000	0.358209	
mm_83910.1	chr9	56324301	56324501	-	1	NA	NA	NA	93649	NM_172924	244895	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	0.005000	0.263682	
mm_6067.1	chr1	60887002	60887202	-	1	NA	NA	NA	-21923	NM_009843	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.020000	0.412935	-30(GAGTTTAAAAGA,-,0.00),6(CAGTTTATAAAG,-,0.00)
mm_1130.1	chr1	60409472	60409672	+	1	NA	NA	NA	-47	NM_001198571	329165	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	0.165000	0.771144	
mm_75799.1	chr8	70138959	70139159	-	1	NA	NA	NA	138	NM_011266	19727	Mm.161167	NM_011266	ENSMUSG00000036120	Rfxank	Tvl1	regulatory factor X-associated ankyrin-containing protein	protein-coding	0.035000	0.492537	
mm_144303.1	chr18	12490717	12490917	+	1	NA	NA	NA	-13382	NM_001347461	16774	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0.005000	0.517413	
mm_145673.1	chr18	61555227	61555427	+	1	NA	NA	NA	-255	NM_146087	93687	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0.100000	0.691542	
mm_95598.1	chr11	53350692	53350892	+	1	NA	NA	NA	25	NM_033565	93736	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.140000	0.786070	
mm_123444.1	chr14	64949762	64949962	-	1	NA	NA	NA	-5	NM_001347626	219150	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.020000	0.552239	
mm_25158.1	chr3	103030055	103030255	+	1	NA	NA	NA	9609	NM_144901	229663	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0.010000	0.318408	
mm_99592.1	chr11	104310302	104310502	+	1	NA	NA	NA	78966	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.055000	0.631841	
mm_117229.1	chr13	64248417	64248617	-	1	NA	NA	NA	21	NM_001122989	218294	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	0.070000	0.572139	
mm_9103.1	chr1	170110224	170110424	-	1	NA	NA	NA	-21380	NM_022563	18214	Mm.229249	NM_022563	ENSMUSG00000026674	Ddr2	AW495251|Ntrkr3|tyro10	discoidin domain receptor family, member 2	protein-coding	0.030000	0.527363	
mm_26183.1	chr3	138341875	138342075	+	1	NA	NA	NA	28689	NM_026945	69117	Mm.46265	NM_026945	ENSMUSG00000053054	Adh6a	1810009C16Rik|Adh5a	alcohol dehydrogenase 6A (class V)	protein-coding	0.015000	0.412935	
mm_41780.1	chr5	103715854	103716054	+	1	NA	NA	NA	-38208	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.000000	0.313433	
mm_95963.1	chr11	58883994	58884194	+	1	NA	NA	NA	16854	NM_172403	69944	Mm.32118	NM_172403	ENSMUSG00000020491	2810021J22Rik	AI449137	RIKEN cDNA 2810021J22 gene	protein-coding	0.010000	0.522388	
mm_125458.1	chr15	52241306	52241506	+	1	NA	NA	NA	-54147	NM_172816	239436	Mm.208831	NM_172816	ENSMUSG00000022315	Slc30a8	C820002P14Rik|ZnT-8|ZnT8	solute carrier family 30 (zinc transporter), member 8	protein-coding	0.000000	0.313433	-57(GACTATTTAGGG,-,0.00),-55(CTATTTAGGGCC,+,0.00)
mm_153612.1	chr19	43980758	43980958	-	1	NA	NA	NA	5662	NM_030703	93721	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	0.065000	0.567164	
mm_19514.1	chr2	93984728	93984928	-	1	NA	NA	NA	4794	NR_045827	70852	Mm.437014	NR_045827	ENSMUSG00000027196	Alkbh3os1	4921507L20Rik	alkB homolog 3, opposite strand 1	ncRNA	0.005000	0.457711	
mm_36875.1	chr4	107177664	107177864	-	1	NA	NA	NA	602	NM_025617	66526	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0.020000	0.407960	
mm_93174.1	chr10	93380025	93380225	-	1	NA	NA	NA	43893	NR_038014	432488	Mm.32833	NR_038014		Gm17745	-	predicted gene, 17745	ncRNA	0.020000	0.562189	
mm_51238.1	chr6	71543785	71543985	+	1	NA	NA	NA	31	NM_025783	66700	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	0.085000	0.651741	
mm_86253.1	chr9	121494757	121494957	-	1	NA	NA	NA	837	NM_001284508	12424	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.020000	0.487562	
mm_43613.1	chr5	137989853	137990053	+	1	NA	NA	NA	8432	NM_013478	12007	Mm.30061	NM_013478	ENSMUSG00000037053	Azgp1	Zag	alpha-2-glycoprotein 1, zinc	protein-coding	0.005000	0.467662	
mm_11850.1	chr2	45246721	45246921	+	1	NA	NA	NA	-133542	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.010000	0.442786	-81(TTCTCTTTAAGG,-,0.00)
mm_32626.1	chr4	114909161	114909361	+	1	NA	NA	NA	-28	NR_030721	100040736	Mm.231287	NR_030721	ENSMUSG00000085399	Foxd2os	9130206I24Rik	forkhead box D2, opposite strand	ncRNA	0.080000	0.716418	
mm_29639.1	chr3	121815085	121815285	-	1	NA	NA	NA	30	NM_008991	19299	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.155000	0.751244	
mm_91833.1	chr10	56982091	56982291	-	1	NA	NA	NA	504162	NR_045353	74928	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	0.005000	0.412935	57(GTGTTTTAAAAC,-,0.00)
mm_49713.1	chr6	34422958	34423158	+	1	NA	NA	NA	10696	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.015000	0.398010	
mm_47955.1	chr5	135545018	135545218	-	1	NA	NA	NA	4	NM_146001	215114	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.070000	0.641791	
mm_76287.1	chr8	84198313	84198513	-	1	NA	NA	NA	-10105	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.050000	0.646766	
mm_128367.1	chr15	42472618	42472818	-	1	NA	NA	NA	204259	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.000000	0.427861	
mm_51674.1	chr6	86438283	86438483	+	1	NA	NA	NA	-15	NM_146170	232196	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	0.075000	0.532338	
mm_24762.1	chr3	95499126	95499326	+	1	NA	NA	NA	16	NM_007802	13038	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.030000	0.492537	
mm_138466.1	chr17	35172043	35172243	+	1	NA	NA	NA	3858	NM_019467	11629	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.015000	0.616915	
mm_98494.1	chr11	94951545	94951745	+	1	NA	NA	NA	15421	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.015000	0.522388	
mm_157463.1	chrX	44790095	44790295	-	1	NA	NA	NA	2	NM_178739	245404	Mm.55685	NM_178739	ENSMUSG00000045284	Dcaf12l1	9330180J20|A230038L21Rik|Decaf12l1|Wdr40b	DDB1 and CUL4 associated factor 12-like 1	protein-coding	0.050000	0.606965	-71(TCATTTAAAGTC,+,0.00)
mm_171615.1	chr4	150315390	150315590	-	1	NA	NA	NA	33574	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.085000	0.626866	
mm_76138.1	chr8	81043316	81043516	-	1	NA	NA	NA	-28510	NM_027554	74841	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	0.005000	0.402985	
mm_34311.1	chr4	141817780	141817980	+	1	NA	NA	NA	8125	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.035000	0.572139	
mm_135060.1	chr16	34040190	34040390	-	1	NA	NA	NA	-73287	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.020000	0.482587	
mm_79756.1	chr9	62373542	62373742	+	1	NA	NA	NA	32299	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.040000	0.567164	
mm_98645.1	chr11	96251006	96251206	+	1	NA	NA	NA	-554	NR_037977	193022	Mm.169508	NR_037977		Gm53	-	predicted gene 53	ncRNA	0.045000	0.631841	
mm_44952.1	chr5	36611643	36611843	-	1	NA	NA	NA	-25517	NM_001113362	100855	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.000000	0.388060	
mm_7058.1	chr1	87219545	87219745	-	1	NA	NA	NA	5706	NM_001039169	26987	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0.005000	0.427861	
mm_31028.1	chr4	40875874	40876074	+	1	NA	NA	NA	-21437	NM_022305	14595	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0.075000	0.592040	
mm_61834.1	chr7	88280872	88281072	+	1	NA	NA	NA	2887	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.005000	0.462687	
mm_30639.1	chr4	8811331	8811531	+	1	NA	NA	NA	121025	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.025000	0.452736	
mm_90409.1	chr10	127420263	127420463	+	1	NA	NA	NA	-504	NM_027900	71750	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.025000	0.522388	
mm_155040.1	chrX	42149222	42149422	+	1	NA	NA	NA	-90	NM_001077712	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.080000	0.472637	
mm_139358.1	chr17	50528831	50529031	+	1	NA	NA	NA	19384	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.015000	0.407960	
mm_8983.1	chr1	165678829	165679029	-	1	NA	NA	NA	29165	NM_178593	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.005000	0.457711	23(GTGTTTTAAAGG,-,0.00),25(GTTTTAAAGGAC,+,0.00)
mm_65707.1	chr7	28377976	28378176	-	1	NA	NA	NA	1152	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.045000	0.597015	
mm_57001.1	chr6	121027339	121027539	-	1	NA	NA	NA	-37025	NR_138098	100043793	Mm.448053	NR_138098		Gm4651	-	predicted gene 4651	ncRNA	0.010000	0.552239	
mm_8883.1	chr1	162866392	162866592	-	1	NA	NA	NA	118	NM_010231	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.005000	0.437811	
mm_131298.1	chr16	11405595	11405795	+	1	NA	NA	NA	47	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.010000	0.542289	
mm_131902.1	chr16	23268324	23268524	+	1	NA	NA	NA	-22046	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.015000	0.557214	
mm_72893.1	chr8	90828221	90828421	+	1	NA	NA	NA	-514	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.020000	0.537313	
mm_12552.1	chr2	72406548	72406748	+	1	NA	NA	NA	-69571	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.015000	0.393035	75(CACTTTAAAAAC,-,0.00)
mm_114201.1	chr13	55957620	55957820	+	1	NA	NA	NA	-126295	NM_011097	18740	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.020000	0.517413	
mm_168784.1	chr12	18771130	18771330	-	1	NA	NA	NA	256720	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.005000	0.407960	
mm_85505.1	chr9	106223661	106223861	-	1	NA	NA	NA	1163	NM_031178	81897	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	0.030000	0.577114	
mm_1989.1	chr1	87125592	87125792	+	1	NA	NA	NA	684	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.045000	0.572139	
mm_91824.1	chr10	56132510	56132710	-	1	NA	NA	NA	25693	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding	0.000000	0.298507	
mm_114561.1	chr13	74406292	74406492	+	1	NA	NA	NA	-673	NR_035409	100124641		NR_035409	ENSMUSG00000076033	Mir692-3	Mir692-2b|Mirn692-2b|mmu-mir-692-3	microRNA 692-3	ncRNA	0.035000	0.482587	
mm_121677.1	chr14	12822797	12822997	-	1	NA	NA	NA	182	NM_001042617	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	0.105000	0.711443	
mm_145887.1	chr18	65581633	65581833	+	1	NA	NA	NA	1503	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.020000	0.626866	
mm_129510.1	chr15	79028802	79029002	-	1	NA	NA	NA	690	NM_008197	14958	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	0.055000	0.562189	
mm_141408.1	chr17	29393572	29393772	-	1	NA	NA	NA	32758	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.010000	0.497512	-33(GAGTCTTAAAGG,-,0.00)
mm_124823.1	chr15	9072843	9073043	+	1	NA	NA	NA	1683	NM_001040395	68646	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.015000	0.388060	
mm_143191.1	chr17	59640674	59640874	-	1	NA	NA	NA	-627452	NM_026497	67993	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.000000	0.323383	
mm_9926.1	chr1	189755077	189755277	-	1	NA	NA	NA	26909	NM_008976	19250	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|OTTMUSG00000022087|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	0.035000	0.532338	
mm_92578.1	chr10	79984173	79984373	-	1	NA	NA	NA	57	NM_001003949	216157	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0.190000	0.830846	
mm_164749.1	chr17	74950253	74950453	+	1	NA	NA	NA	-55176	NM_019919	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.000000	0.412935	
mm_91121.1	chr10	19577476	19577676	-	1	NA	NA	NA	-14373	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.010000	0.412935	
mm_23849.1	chr3	83008368	83008568	+	1	NA	NA	NA	744	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.030000	0.482587	
mm_120111.1	chr14	59478744	59478944	+	1	NA	NA	NA	37863	NM_026908	69008	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding	0.005000	0.487562	
mm_54163.1	chr6	23098010	23098210	-	1	NA	NA	NA	34876	NM_013930	30956	Mm.18651	NM_013930	ENSMUSG00000029695	Aass	LKR|LKR/SDH|LOR|LOR/SDH|Lorsdh|SDH	aminoadipate-semialdehyde synthase	protein-coding	0.000000	0.437811	
mm_158345.1	chrX	134276828	134277028	-	1	NA	NA	NA	56	NM_172540	215201	Mm.289368	NM_172540	ENSMUSG00000067369	Trmt2b	4732479N06Rik	TRM2 tRNA methyltransferase 2B	protein-coding	0.060000	0.641791	
mm_113674.1	chr13	42745597	42745797	+	1	NA	NA	NA	36116	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.005000	0.417910	
mm_26935.1	chr3	20263601	20263801	-	1	NA	NA	NA	12032	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.020000	0.422886	
mm_100257.1	chr11	117332102	117332302	+	1	NA	NA	NA	-111	NM_001113488	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.060000	0.601990	
mm_130437.1	chr15	98257321	98257521	-	1	NA	NA	NA	-114	NM_027304	70069	Mm.107718	NM_027304	ENSMUSG00000048077	H1fnt	1700026P10Rik|H1.7|H1t2|Hanp1|mH1t2	H1 histone family, member N, testis-specific	protein-coding	0.015000	0.542289	
mm_35070.1	chr4	6776469	6776669	-	1	NA	NA	NA	214154	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.005000	0.398010	
mm_138967.1	chr17	44777063	44777263	+	1	NA	NA	NA	-8	NM_178652	109115	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	0.120000	0.736318	
mm_88416.1	chr10	77035731	77035931	+	1	NA	NA	NA	2619	NM_031196	20509	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.015000	0.442786	
mm_135259.1	chr16	37843440	37843640	-	1	NA	NA	NA	-24860	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.025000	0.582090	
mm_38981.1	chr4	150944700	150944900	-	1	NA	NA	NA	16801	NM_001077509	21942	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.015000	0.472637	
mm_151241.1	chr19	53852819	53853019	+	1	NA	NA	NA	-39312	NM_011050	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.010000	0.472637	
mm_4427.1	chr1	172505700	172505900	+	1	NA	NA	NA	5554	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.015000	0.537313	
mm_112253.1	chr12	113736550	113736750	-	1	NA	NA	NA	192742	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.015000	0.507463	
mm_84658.1	chr9	71719254	71719454	-	1	NA	NA	NA	52248	NM_026599	68178	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	0.010000	0.492537	
mm_133946.1	chr16	3959364	3959564	-	1	NA	NA	NA	17168	NM_175547	268857	Mm.215994	NM_175547	ENSMUSG00000049871	Nlrc3	CLR16.2|D230007K08Rik|mFLJ00348	NLR family, CARD domain containing 3	protein-coding	0.000000	0.492537	
mm_117444.1	chr13	74768820	74769020	-	1	NA	NA	NA	1816	NM_001301156	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.020000	0.492537	
mm_104762.1	chr11	98477289	98477489	-	1	NA	NA	NA	30555	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.025000	0.422886	
mm_172840.1	chr9	32136163	32136363	-	1	NA	NA	NA	20127	NM_001195632	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.000000	0.502488	
mm_59558.1	chr7	28084834	28085034	+	1	NA	NA	NA	13698	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.035000	0.552239	
mm_47582.1	chr5	124578960	124579160	-	1	NA	NA	NA	71	NM_145371	209354	Mm.28839	NM_145371	ENSMUSG00000029388	Eif2b1	D5Ertd406e|EIF2BA	eukaryotic translation initiation factor 2B, subunit 1 (alpha)	protein-coding	0.150000	0.691542	
mm_39751.1	chr5	29676430	29676630	+	1	NA	NA	NA	-59368	NM_001037940	23950	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0.010000	0.383085	
mm_18302.1	chr2	53145812	53146012	-	1	NA	NA	NA	45275	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.005000	0.308458	
mm_99199.1	chr11	101020862	101021062	+	1	NA	NA	NA	-9378	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.005000	0.378109	77(TCTTTTAAACCC,+,0.00)
mm_100971.1	chr11	6719818	6720018	-	1	NA	NA	NA	119	NR_046025	626419	Mm.390334	NR_046025	ENSMUSG00000086808	Gm11981	OTTMUSG00000005129	predicted gene 11981	ncRNA	0.025000	0.552239	
mm_25294.1	chr3	105904300	105904500	+	1	NA	NA	NA	-21	NM_009631	11542	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0.005000	0.502488	22(CACTCTAAAGAG,-,0.00)
mm_142732.1	chr17	48351672	48351872	-	1	NA	NA	NA	5371	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.010000	0.577114	
mm_117718.1	chr13	95375249	95375449	-	1	NA	NA	NA	8	NM_025630	66549	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	0.110000	0.646766	
mm_40119.1	chr5	34975053	34975253	+	1	NA	NA	NA	-23925	NM_001163512	71729	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.005000	0.437811	
mm_5260.1	chr1	16688850	16689050	-	1	NA	NA	NA	494	NM_016923	17087	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0.015000	0.527363	
mm_21094.1	chr2	153225286	153225486	-	1	NA	NA	NA	55	NM_198617	241732	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.050000	0.646766	
mm_131015.1	chr15	103563207	103563407	-	1	NA	NA	NA	1774	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.005000	0.517413	
mm_1049.1	chr1	58802440	58802640	+	1	NA	NA	NA	38	NM_001080126	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.000000	0.527363	
mm_145734.1	chr18	64265067	64265267	+	1	NA	NA	NA	10808	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.090000	0.676617	
mm_136796.1	chr17	12119211	12119411	+	1	NA	NA	NA	27	NM_026644	68262	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.030000	0.542289	
mm_160045.1	chr6	140624659	140624859	+	1	NA	NA	NA	-150	NM_001309437	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.065000	0.676617	
mm_43837.1	chr5	142972678	142972878	+	1	NA	NA	NA	12423	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.010000	0.507463	
mm_67621.1	chr7	84054224	84054424	-	1	NA	NA	NA	32181	NM_030728	80982	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	0.010000	0.298507	-96(CCTTTTAAATAA,+,0.00),-7(TTTTTTAAAGCA,+,0.00)
mm_25496.1	chr3	109340707	109340907	+	1	NA	NA	NA	124	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.175000	0.805970	
mm_46780.1	chr5	112475771	112475971	-	1	NA	NA	NA	26445	NM_001177504	625464	Mm.389676	NM_001177504	ENSMUSG00000072722	Gm6588	EG625464	predicted gene 6588	protein-coding	0.035000	0.567164	
mm_68912.1	chr7	126458828	126459028	-	1	NA	NA	NA	4145	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.010000	0.507463	
mm_144759.1	chr18	35771423	35771623	+	1	NA	NA	NA	-36	NM_019912	56550	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0.120000	0.805970	
mm_125754.1	chr15	73751217	73751417	+	1	NA	NA	NA	3291	NM_008975	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.040000	0.646766	
mm_132510.1	chr16	37011196	37011396	+	1	NA	NA	NA	-490	NM_029977	77782	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	0.025000	0.427861	-35(GGCTATTTAAGG,-,0.00),-33(CTATTTAAGGGG,+,0.00)
mm_3241.1	chr1	136017921	136018121	+	1	NA	NA	NA	20	NM_025439	66241	Mm.41773	NM_025439	ENSMUSG00000026411	Tmem9	1500015G18Rik|AW545782	transmembrane protein 9	protein-coding	0.045000	0.611940	
mm_4248.1	chr1	171407807	171408007	+	1	NA	NA	NA	-3406	NM_001305678	22278	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	0.010000	0.532338	
mm_110045.1	chr12	17507107	17507307	-	1	NA	NA	NA	-37666	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.015000	0.507463	
mm_71631.1	chr8	57455928	57456128	+	1	NA	NA	NA	105	NM_009136	20284	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.005000	0.532338	
mm_15695.1	chr2	163661397	163661597	+	1	NA	NA	NA	3039	NM_001164053	18769	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.010000	0.477612	
mm_119070.1	chr14	30870531	30870731	+	1	NA	NA	NA	-8626	NM_181390	66175	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0.005000	0.472637	
mm_67400.1	chr7	79920529	79920729	-	1	NA	NA	NA	11	NM_009682	11778	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	0.065000	0.562189	
mm_32209.1	chr4	101508015	101508215	+	1	NA	NA	NA	139	NM_001164584	72685	Mm.76494	NM_198412	ENSMUSG00000028528	Dnajc6	2810027M23Rik|mKIAA0473	DnaJ heat shock protein family (Hsp40) member C6	protein-coding	0.040000	0.532338	
mm_127852.1	chr15	7885121	7885321	-	1	NA	NA	NA	69671	NM_001301357	14573	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0.020000	0.547264	
mm_98243.1	chr11	88192659	88192859	+	1	NA	NA	NA	-1347	NM_001291270	64656	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	0.020000	0.597015	
mm_80139.1	chr9	70748099	70748299	+	1	NA	NA	NA	69217	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.010000	0.437811	
mm_55452.1	chr6	67315167	67315367	-	1	NA	NA	NA	24427	NM_001311141	16162	Mm.188337	NM_008354	ENSMUSG00000018341	Il12rb2	A930027I18Rik|IL-12RB2|Ifnm	interleukin 12 receptor, beta 2	protein-coding	0.000000	0.388060	
mm_25601.1	chr3	116904281	116904481	+	1	NA	NA	NA	42701	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.020000	0.467662	
mm_150311.1	chr19	34573124	34573324	+	1	NA	NA	NA	-10305	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.000000	0.477612	
mm_172072.1	chr6	137648174	137648374	-	1	NA	NA	NA	1011	NM_001271588	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.025000	0.512438	
mm_134412.1	chr16	17704294	17704494	-	1	NA	NA	NA	18506	NM_001285886	94112	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.010000	0.447761	
mm_144502.1	chr18	24603466	24603666	+	1	NA	NA	NA	251	NM_139143	106957	Mm.21688	NM_139143	ENSMUSG00000024270	Slc39a6	Ermelin	solute carrier family 39 (metal ion transporter), member 6	protein-coding	0.125000	0.676617	
mm_146379.1	chr18	82585051	82585251	+	1	NA	NA	NA	30643	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.030000	0.537313	
mm_152846.1	chr19	24007244	24007444	-	1	NA	NA	NA	23675	NM_001114174	381217	Mm.426078	NM_001114174	ENSMUSG00000071604	Fam189a2	AI414343|AI666772|Gm967	family with sequence similarity 189, member A2	protein-coding	0.015000	0.452736	
mm_15627.1	chr2	162943400	162943600	+	1	NA	NA	NA	35	NM_001081338	241764	Mm.187086	NM_001081338	ENSMUSG00000035576	L3mbtl1	C630004G01|L3mbtl|mKIAA0681	l(3)mbt-like (Drosophila)	protein-coding	0.100000	0.726368	
mm_4704.1	chr1	180851052	180851252	+	1	NA	NA	NA	1	NM_145943	208768	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.110000	0.671642	
mm_169984.1	chr17	15021141	15021341	-	1	NA	NA	NA	-11057	NM_001123367	100041639	Mm.440445	NM_001123367	ENSMUSG00000079710	Gm3448	-	predicted gene 3448	protein-coding	0.000000	0.477612	
mm_88236.1	chr10	71347736	71347936	+	1	NA	NA	NA	73	NM_027184	69718	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.165000	0.800995	
mm_123054.1	chr14	55643472	55643672	-	1	NA	NA	NA	234	NM_028780	74140	Mm.132857	NM_028780	ENSMUSG00000002320	Tm9sf1	1200014D02Rik|AI893436|MP70	transmembrane 9 superfamily member 1	protein-coding	0.120000	0.686567	
mm_127165.1	chr15	98708102	98708302	+	1	NA	NA	NA	-25	NM_153518	105833	Mm.26205	NM_153518	ENSMUSG00000003354	Ccdc65	4933417K04Rik|AI428139|AU020178|NYD-SP28	coiled-coil domain containing 65	protein-coding	0.050000	0.592040	
mm_118796.1	chr14	24490584	24490784	+	1	NA	NA	NA	3	NM_011297	20088	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	0.070000	0.606965	
mm_129718.1	chr15	81926086	81926286	-	1	NA	NA	NA	27	NM_030229	78929	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	0.115000	0.681592	
mm_94377.1	chr11	5136146	5136346	+	1	NA	NA	NA	15976	NM_080595	140703	Mm.840	NM_080595	ENSMUSG00000034164	Emid1	AW122071|CO-5|Emu1	EMI domain containing 1	protein-coding	0.020000	0.606965	-99(TGCCTTTTAAGG,-,0.00),-98(GCCTTTTAAGGC,-,0.00),-97(CCTTTTAAGGCC,+,0.00)
mm_56025.1	chr6	86607452	86607652	-	1	NA	NA	NA	-20622	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.030000	0.517413	
mm_46036.1	chr5	91962188	91962388	-	1	NA	NA	NA	268	NR_073442	68098	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0.015000	0.412935	
mm_109459.1	chr12	111166342	111166542	+	1	NA	NA	NA	72	NM_011632	22031	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.170000	0.810945	
mm_157811.1	chrX	73965919	73966119	-	1	NA	NA	NA	338	NM_008224	15161	Mm.491126	NM_008224	ENSMUSG00000031386	Hcfc1	AW060991|HCF|HCF1	host cell factor C1	protein-coding	0.055000	0.582090	
mm_119002.1	chr14	29018013	29018213	+	1	NA	NA	NA	-95	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding	0.020000	0.507463	
mm_167181.1	chr7	141637379	141637579	-	1	NA	NA	NA	16778	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.005000	0.477612	
mm_34299.1	chr4	141713947	141714147	+	1	NA	NA	NA	9372	NM_001017966	68817	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	0.015000	0.507463	-36(TTCTCTATAAGA,-,0.00)
mm_147617.1	chr18	57533655	57533855	-	1	NA	NA	NA	-3	NR_015541	74916	Mm.444721	NR_015541	ENSMUSG00000085800	1700066O22Rik	4930500F21Rik|4930515O13Rik|4930542C11Rik	RIKEN cDNA 1700066O22 gene	ncRNA	0.010000	0.462687	
mm_60861.1	chr7	45883249	45883449	+	1	NA	NA	NA	10509	NM_133950	68137	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	0.015000	0.482587	
mm_95971.1	chr11	58948805	58949005	+	1	NA	NA	NA	-6	NM_030082	78303	Mm.28022	NM_030082	ENSMUSG00000056895	Hist3h2ba	1500011O09Rik|AI413321	histone cluster 3, H2ba	protein-coding	0.030000	0.477612	
mm_4520.1	chr1	175631899	175632099	+	1	NA	NA	NA	-194	NM_133809	98256	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	0.030000	0.412935	-35(TGCTATTTAAAC,-,0.00)
mm_129169.1	chr15	76249230	76249430	-	1	NA	NA	NA	1139	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.015000	0.537313	
mm_104179.1	chr11	87751524	87751724	-	1	NA	NA	NA	-5240	NR_029555	387160		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.010000	0.552239	
mm_122942.1	chr14	54965323	54965523	-	1	NA	NA	NA	1184	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.045000	0.567164	
mm_71184.1	chr8	40862348	40862548	+	1	NA	NA	NA	81	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.110000	0.711443	
mm_113214.1	chr13	25187347	25187547	+	1	NA	NA	NA	82549	NM_009513	22360	Mm.4766	NM_009513	ENSMUSG00000048978	Nrsn1	Neurensin-1|Neuro-p24|Vmp	neurensin 1	protein-coding	0.020000	0.572139	
mm_81143.1	chr9	106821929	106822129	+	1	NA	NA	NA	53	NM_001015507	321006	Mm.440089	NM_001015507	ENSMUSG00000040325	Vprbp	AI447437|B930007L02Rik|mKIAA0800	Vpr (HIV-1) binding protein	protein-coding	0.080000	0.646766	
mm_19477.1	chr2	92970597	92970797	-	1	NA	NA	NA	55596	NM_030725	80976	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	0.000000	0.447761	
mm_84879.1	chr9	79718671	79718871	-	1	NA	NA	NA	-49	NM_001290308	12816	Mm.3819	NM_007730	ENSMUSG00000032332	Col12a1	-	collagen, type XII, alpha 1	protein-coding	0.080000	0.601990	
mm_110843.1	chr12	73041609	73041809	-	1	NA	NA	NA	5003	NM_009189	20471	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0.005000	0.368159	64(ACTTATAAAGTC,+,0.00)
mm_72710.1	chr8	84986354	84986554	+	1	NA	NA	NA	-4141	NM_133255	170833	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	0.020000	0.482587	52(AGCCATATAAAG,-,0.00),54(CCATATAAAGTG,+,0.00)
mm_49964.1	chr6	40735272	40735472	+	1	NA	NA	NA	106541	NM_001171003	232714	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding	0.010000	0.507463	
mm_78411.1	chr9	30438784	30438984	+	1	NA	NA	NA	11555	NM_028874	102607	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	0.005000	0.398010	
mm_68081.1	chr7	101870567	101870767	-	1	NA	NA	NA	121	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.010000	0.527363	
mm_130483.1	chr15	98742518	98742718	-	1	NA	NA	NA	-14420	NM_024169	66120	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.030000	0.577114	
mm_37480.1	chr4	123572731	123572931	-	1	NA	NA	NA	-43589	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.030000	0.567164	
mm_40703.1	chr5	65861125	65861325	+	1	NA	NA	NA	-2344	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.025000	0.482587	
mm_80475.1	chr9	78191886	78192086	+	1	NA	NA	NA	20	NM_010357	14860	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	0.055000	0.512438	
mm_88333.1	chr10	75573357	75573557	+	1	NA	NA	NA	-38	NM_008116	14598	Mm.4559	NM_008116	ENSMUSG00000006345	Ggt1	CD224|GGT|GGT 1|GGT-1|Ggtp|dwg	gamma-glutamyltransferase 1	protein-coding	0.030000	0.542289	-99(CCTTTTATACGG,+,0.00)
mm_112141.1	chr12	113140035	113140235	-	1	NA	NA	NA	-101	NM_024223	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.120000	0.676617	
mm_143130.1	chr17	57214745	57214945	-	1	NA	NA	NA	2383	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.030000	0.537313	
mm_120451.1	chr14	65968542	65968742	+	1	NA	NA	NA	159	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.070000	0.646766	-31(CGCTATAAATAG,-,0.00)
mm_137310.1	chr17	24878653	24878853	+	1	NA	NA	NA	-17	NM_008340	16005	Mm.3135	NM_008340	ENSMUSG00000046070	Igfals	ALS|Albs|mKIAA4111	insulin-like growth factor binding protein, acid labile subunit	protein-coding	0.015000	0.616915	
mm_59147.1	chr7	24369758	24369958	+	1	NA	NA	NA	-405	NM_001163510	16534	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0.035000	0.587065	
mm_38787.1	chr4	148087964	148088164	-	1	NA	NA	NA	0	NM_009642	11610	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.100000	0.671642	
mm_77743.1	chr8	126970996	126971196	-	1	NA	NA	NA	-17	NM_172762	52202	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	0.065000	0.606965	
mm_117008.1	chr13	58001751	58001951	-	1	NA	NA	NA	21349	NR_030544	100124491		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	0.015000	0.308458	
mm_78733.1	chr9	41581902	41582102	+	1	NA	NA	NA	76	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA	0.035000	0.487562	36(GTCTTTTAAGGA,-,0.00),37(TCTTTTAAGGAA,+,0.00)
mm_172146.1	chr6	37686810	37687010	-	1	NA	NA	NA	156737	NM_145364	208665	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0.025000	0.477612	
mm_40087.1	chr5	34536052	34536252	+	1	NA	NA	NA	-7213	NM_001145858	24055	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.010000	0.537313	
mm_45575.1	chr5	73630258	73630458	-	1	NA	NA	NA	2063	NM_153568	231296	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	0.010000	0.502488	
mm_98540.1	chr11	95009981	95010181	+	1	NA	NA	NA	202	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.130000	0.736318	
mm_7051.1	chr1	87127670	87127870	-	1	NA	NA	NA	2762	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.050000	0.676617	
mm_62743.1	chr7	111056679	111056879	+	1	NA	NA	NA	26251	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.000000	0.393035	
mm_60385.1	chr7	44473857	44474057	+	1	NA	NA	NA	3610	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.437811	
mm_133682.1	chr16	92485621	92485821	+	1	NA	NA	NA	6979	NM_029740	76785	Mm.444318	NM_029740		2410124H12Rik	-	RIKEN cDNA 2410124H12 gene	protein-coding	0.020000	0.532338	
mm_57019.1	chr6	121473508	121473708	-	1	NA	NA	NA	70	NM_001033354	243621	Mm.299442	NM_001033354	ENSMUSG00000040797	Iqsec3	AK122446|BRAG3|mKIAA1110|synarfGEF	IQ motif and Sec7 domain 3	protein-coding	0.115000	0.751244	
mm_51512.1	chr6	83137721	83137921	+	1	NA	NA	NA	737	NM_009106	20166	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0.030000	0.621891	
mm_12977.1	chr2	90777125	90777325	+	1	NA	NA	NA	-5519	NM_178755	271813	Mm.61146	NM_178755	ENSMUSG00000040812	Agbl2	4930524K04|A430081C19Rik|CCP2	ATP/GTP binding protein-like 2	protein-coding	0.005000	0.318408	
mm_65000.1	chr7	17024829	17025029	-	1	NA	NA	NA	2985	NM_011155	19060	Mm.3294	NM_011155	ENSMUSG00000003099	Ppp5c	AU020526|PP5	protein phosphatase 5, catalytic subunit	protein-coding	0.030000	0.582090	-97(GTTTATAGAGGA,+,0.00)
mm_119275.1	chr14	34219943	34220143	+	1	NA	NA	NA	-3	NM_176931	319508	Mm.228006	NM_176931	ENSMUSG00000041479	Syt15	CHR10SYT|E230025K04Rik|sytXV	synaptotagmin XV	protein-coding	0.090000	0.736318	
mm_162659.1	chr10	5032174	5032374	+	1	NA	NA	NA	36789	NM_022027	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.015000	0.422886	
mm_134895.1	chr16	29849514	29849714	-	1	NA	NA	NA	129510	NR_037689	328657	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.020000	0.472637	
mm_90171.1	chr10	119502630	119502830	+	1	NA	NA	NA	48696	NM_001277293	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding	0.010000	0.502488	19(CCTTTTAGAGAT,+,0.00)
mm_155854.1	chrX	101299072	101299272	+	1	NA	NA	NA	-7	NM_172932	245537	Mm.121508	NM_172932	ENSMUSG00000031302	Nlgn3	A230085M13Rik|HNL3|NL3	neuroligin 3	protein-coding	0.080000	0.681592	
mm_51483.1	chr6	83048426	83048626	+	1	NA	NA	NA	-1185	NR_106007	102465630		NR_106007	ENSMUSG00000099035	Mir7040	Gm27489|mmu-mir-7040	microRNA 7040	ncRNA	0.015000	0.507463	60(GCGTCTAAAGGG,-,0.00)
mm_144664.1	chr18	34331065	34331265	+	1	NA	NA	NA	20	NM_025527	66384	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	0.120000	0.701493	
mm_59502.1	chr7	27553173	27553373	+	1	NA	NA	NA	-17	NM_175107	66367	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	0.075000	0.706468	
mm_77354.1	chr8	119605106	119605306	-	1	NA	NA	NA	34	NM_021441	21341	Mm.41977	NM_021441	ENSMUSG00000031832	Taf1c	Tafi95|mTAFI95	TATA-box binding protein associated factor, RNA polymerase I, C	protein-coding	0.065000	0.611940	
mm_79752.1	chr9	62373373	62373573	+	1	NA	NA	NA	32130	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.035000	0.542289	
mm_17917.1	chr2	35432689	35432889	-	1	NA	NA	NA	28660	NM_001308299	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.020000	0.577114	
mm_84776.1	chr9	75683812	75684012	-	1	NA	NA	NA	144	NM_001164790	20255	Mm.2386	NM_009130	ENSMUSG00000032181	Scg3	1B1075|AI385542|Chgd|SgIII	secretogranin III	protein-coding	0.085000	0.691542	
mm_71593.1	chr8	54954932	54955132	+	1	NA	NA	NA	304	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.010000	0.437811	
mm_97178.1	chr11	75532140	75532340	+	1	NA	NA	NA	128	NM_001199283	215113	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.040000	0.606965	
mm_142024.1	chr17	35205211	35205411	-	1	NA	NA	NA	40	NM_010735	16992	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0.045000	0.641791	
mm_76889.1	chr8	105637820	105638020	-	1	NA	NA	NA	1382	NM_181322	13018	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0.020000	0.462687	
mm_74538.1	chr8	9771406	9771606	-	1	NA	NA	NA	-349	NM_001347127	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding	0.080000	0.691542	
mm_17976.1	chr2	37677799	37677999	-	1	NA	NA	NA	-30614	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding	0.000000	0.303483	
mm_13108.1	chr2	91526747	91526947	+	1	NA	NA	NA	-19475	NM_001165989	75786	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0.110000	0.706468	
mm_30955.1	chr4	33310297	33310497	+	1	NA	NA	NA	86	NM_001305273	24018	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.100000	0.661692	
mm_114222.1	chr13	56438287	56438487	+	1	NA	NA	NA	32	NM_177809	328258	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	0.110000	0.671642	
mm_145097.1	chr18	43207631	43207831	+	1	NA	NA	NA	34	NM_178749	269019	Mm.150401	NM_178749	ENSMUSG00000039954	Stk32a	A930015B13Rik|YANK1	serine/threonine kinase 32A	protein-coding	0.070000	0.656716	
mm_81504.1	chr9	110034535	110034735	+	1	NA	NA	NA	-17386	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.020000	0.467662	
mm_32638.1	chr4	115056644	115056844	+	1	NA	NA	NA	318	NM_011527	21349	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.155000	0.756219	
mm_121048.1	chr14	84175156	84175356	+	1	NA	NA	NA	-268307	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0.000000	0.288557	
mm_158272.1	chrX	111450568	111450768	-	1	NA	NA	NA	87291	NM_025949	67071	Mm.37617	NM_025949	ENSMUSG00000025665	Rps6ka6	2610524K04Rik|RSK4|S6K-alpha-6	ribosomal protein S6 kinase polypeptide 6	protein-coding	0.005000	0.422886	-89(GCTTATATGGGC,+,0.00),32(ACTTTTAAACTC,+,0.00)
mm_142896.1	chr17	51903825	51904025	-	1	NA	NA	NA	21198	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.010000	0.447761	
mm_65977.1	chr7	30444323	30444523	-	1	NA	NA	NA	1159	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.070000	0.631841	
mm_13515.1	chr2	109917548	109917748	+	1	NA	NA	NA	1	NM_172671	107515	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	0.095000	0.651741	
mm_59724.1	chr7	28787893	28788093	+	1	NA	NA	NA	-976	NM_177158	320435	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0.025000	0.582090	
mm_159092.1	chr2	32395543	32395743	+	1	NA	NA	NA	-247	NM_133783	96979	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	0.075000	0.621891	
mm_99200.1	chr11	101021344	101021544	+	1	NA	NA	NA	-8896	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.025000	0.467662	
mm_106288.1	chr11	118206346	118206546	-	1	NA	NA	NA	6296	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.010000	0.402985	
mm_49401.1	chr6	28426249	28426449	+	1	NA	NA	NA	-1552	NM_019569	56223	Mm.31708	NM_019569	ENSMUSG00000029707	Fscn3	-	fascin actin-bundling protein 3	protein-coding	0.010000	0.611940	
mm_73601.1	chr8	109998834	109999034	+	1	NA	NA	NA	8498	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.015000	0.522388	
mm_148282.1	chr18	82525844	82526044	-	1	NA	NA	NA	-28519	NM_001025256	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.020000	0.512438	
mm_65576.1	chr7	27195648	27195848	-	1	NA	NA	NA	12	NM_001046637	53607	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0.085000	0.587065	
mm_41283.1	chr5	90461629	90461829	+	1	NA	NA	NA	859	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.358209	
mm_26955.1	chr3	20506122	20506322	-	1	NA	NA	NA	-139045	NM_175086	11608	Mm.134863	NM_175086	ENSMUSG00000054988	Agtr1b	AT1B|AT2R1B|Agtr-1b|Angtr-1b	angiotensin II receptor, type 1b	protein-coding	0.040000	0.517413	
mm_149568.1	chr19	12804615	12804815	+	1	NA	NA	NA	6106	NM_134152	107321	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	0.000000	0.393035	-96(TCCTTTATAAGA,-,0.00)
mm_74434.1	chr8	3748847	3749047	-	1	NA	NA	NA	37	NM_133238	170786	Mm.32510	NM_133238	ENSMUSG00000031494	Cd209a	CD209|CDSIGN|CIRE|DC-SIGN|DC-SIGN1|Dcsign|SIGN-R1|SIGNR5	CD209a antigen	protein-coding	0.010000	0.487562	
mm_80457.1	chr9	77982916	77983116	+	1	NA	NA	NA	65651	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.025000	0.422886	
mm_159683.1	chr5	7344480	7344680	-	1	NA	NA	NA	-202	NM_001163223	207618	Mm.478808	NM_001163223	ENSMUSG00000092094	Zfp804b	Gm441	zinc finger protein 804B	protein-coding	0.085000	0.661692	
mm_126318.1	chr15	79690787	79690987	+	1	NA	NA	NA	-9	NM_013818	14904	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	0.110000	0.626866	
mm_85578.1	chr9	107289740	107289940	-	1	NA	NA	NA	37	NM_178907	102626	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0.075000	0.666667	-8(GGCCCTTTAAGG,-,0.00),-6(CCCTTTAAGGTT,+,0.00)
mm_16349.1	chr2	174346384	174346584	+	1	NA	NA	NA	16395	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.015000	0.422886	
mm_6818.1	chr1	84186977	84187177	-	1	NA	NA	NA	31884	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.318408	
mm_73166.1	chr8	95020347	95020547	+	1	NA	NA	NA	2755	NM_173036	54672	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.010000	0.552239	
mm_133503.1	chr16	90738009	90738209	+	1	NA	NA	NA	-215	NM_029844	77037	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.035000	0.492537	
mm_104426.1	chr11	94942757	94942957	-	1	NA	NA	NA	6633	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.030000	0.616915	
mm_106122.1	chr11	116359395	116359595	-	1	NA	NA	NA	-24141	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.020000	0.527363	
mm_128561.1	chr15	56049750	56049950	-	1	NA	NA	NA	-142901	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding	0.010000	0.432836	-31(GCTTAAAAACCC,+,0.00)
mm_31948.1	chr4	86748442	86748642	+	1	NA	NA	NA	-13	NM_184088	329877	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	0.060000	0.636816	
mm_118756.1	chr14	22371769	22371969	+	1	NA	NA	NA	170929	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.015000	0.398010	
mm_154862.1	chrX	20658921	20659121	+	1	NA	NA	NA	517	NM_001276317	22201	Mm.1104	NM_009457	ENSMUSG00000001924	Uba1	A1S9|Sbx|Ube-1|Ube1x	ubiquitin-like modifier activating enzyme 1	protein-coding	0.045000	0.611940	
mm_64655.1	chr7	4150125	4150325	-	1	NA	NA	NA	-353	NM_175529	243813	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.040000	0.601990	
mm_160771.1	chr10	114801221	114801421	-	1	NA	NA	NA	49	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	0.060000	0.621891	
mm_114878.1	chr13	94173952	94174152	+	1	NA	NA	NA	111229	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.075000	0.696517	
mm_67955.1	chr7	100499422	100499622	-	1	NA	NA	NA	6164	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.005000	0.557214	
mm_29193.1	chr3	106760423	106760623	-	1	NA	NA	NA	29626	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.000000	0.383085	14(TTTTTTAAAGAG,+,0.00)
mm_20076.1	chr2	120568014	120568214	-	1	NA	NA	NA	443	NM_009222	20619	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	0.030000	0.497512	
mm_125227.1	chr15	34131132	34131332	+	1	NA	NA	NA	48513	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.000000	0.402985	
mm_130079.1	chr15	89373957	89374157	-	1	NA	NA	NA	-239	NM_001111288	100126824	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	0.120000	0.676617	
mm_126509.1	chr15	81802666	81802866	+	1	NA	NA	NA	93	NM_153484	21685	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.015000	0.636816	
mm_15992.1	chr2	167060432	167060632	+	1	NA	NA	NA	-2402	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.010000	0.502488	
mm_97742.1	chr11	80467773	80467973	+	1	NA	NA	NA	-9173	NM_009871	12569	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0.005000	0.363184	-90(TCCTTTAAACCC,+,0.00)
mm_91252.1	chr10	22731832	22732032	-	1	NA	NA	NA	-485	NM_011603	237336	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.120000	0.706468	
mm_110850.1	chr12	73113321	73113521	-	1	NA	NA	NA	-176	NM_011382	20474	Mm.249575	NM_011382	ENSMUSG00000034460	Six4	AI047561|AREC3|TrexBF	sine oculis-related homeobox 4	protein-coding	0.060000	0.587065	
mm_78640.1	chr9	40269260	40269460	+	1	NA	NA	NA	144	NM_178227	235281	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.065000	0.686567	
mm_4264.1	chr1	171458246	171458446	+	1	NA	NA	NA	20785	NM_172647	16456	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	0.010000	0.462687	
mm_22000.1	chr2	167744022	167744222	-	1	NA	NA	NA	52945	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.010000	0.542289	
mm_148723.1	chr19	5846776	5846976	+	1	NA	NA	NA	-1396	NR_003513	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.025000	0.492537	
mm_28335.1	chr3	89387040	89387240	-	1	NA	NA	NA	-4724	NR_040403	545539	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	ENSMUSG00000074466|OTTMUSG00000021274	predicted gene 15417	ncRNA	0.025000	0.666667	
mm_172324.1	chr7	106644527	106644727	-	1	NA	NA	NA	18	NM_001277179	434223	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	0.005000	0.487562	
mm_40541.1	chr5	58002630	58002830	+	1	NA	NA	NA	284649	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.005000	0.383085	16(GCCTCTATGAGC,-,0.00)
mm_148955.1	chr19	7297629	7297829	+	1	NA	NA	NA	-2282	NM_001080390	13728	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.000000	0.432836	
mm_61774.1	chr7	83631878	83632078	+	1	NA	NA	NA	-39	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.065000	0.626866	
mm_128309.1	chr15	37791950	37792150	-	1	NA	NA	NA	-50	NM_001170866	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.120000	0.766169	
mm_122719.1	chr14	52279189	52279389	-	1	NA	NA	NA	106	NM_172601	76338	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	0.050000	0.537313	
mm_147543.1	chr18	53861890	53862090	-	1	NA	NA	NA	-123	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.105000	0.686567	
mm_162277.1	chr1	16661512	16661712	+	1	NA	NA	NA	-3579	NM_027415	70397	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	0.005000	0.507463	70(CCTTTTAAAGTT,+,0.00)
mm_86801.1	chr10	20312408	20312608	+	1	NA	NA	NA	39	NM_001025393	72567	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0.095000	0.636816	
mm_58830.1	chr7	16781268	16781468	+	1	NA	NA	NA	22	NM_009201	20514	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	0.080000	0.587065	-78(CCTTTTCAAGTC,+,0.00)
mm_7501.1	chr1	121430922	121431122	-	1	NA	NA	NA	-45	NM_029955	70829	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	0.055000	0.572139	
mm_151204.1	chr19	53539611	53539811	+	1	NA	NA	NA	10393	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.000000	0.442786	
mm_78103.1	chr9	19622214	19622414	+	1	NA	NA	NA	223	NM_172918	244713	Mm.67366	NM_172918	ENSMUSG00000057551	Zfp317	4932416G03|D230022C05Rik|KRAB9|Zfp67|Zfp75|mszf40	zinc finger protein 317	protein-coding	0.060000	0.587065	
mm_35525.1	chr4	41275179	41275379	-	1	NA	NA	NA	-144	NM_026872	68926	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0.060000	0.527363	-57(GCTTTAATAGTG,+,0.00)
mm_122251.1	chr14	34015096	34015296	-	1	NA	NA	NA	-25882	NM_001034880	432838	Mm.318383	NM_001034880	ENSMUSG00000072624	Gm5460	EG432838	predicted gene 5460	protein-coding	0.000000	0.507463	
mm_110740.1	chr12	69791217	69791417	-	1	NA	NA	NA	-610	NM_183294	71091	Mm.132325	NM_183294	ENSMUSG00000020990	Cdkl1	4933411O17Rik	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding	0.055000	0.572139	
mm_99157.1	chr11	100619150	100619350	+	1	NA	NA	NA	918	NM_019795	56354	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0.075000	0.666667	
mm_81548.1	chr9	110281247	110281447	+	1	NA	NA	NA	60	NR_105744	102465959		NR_105744	ENSMUSG00000098973	Mir6236	Gm27547|mmu-mir-6236	microRNA 6236	ncRNA	0.030000	0.487562	
mm_40460.1	chr5	53609128	53609328	+	1	NA	NA	NA	18742	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.000000	0.398010	
mm_60096.1	chr7	35119506	35119706	+	1	NA	NA	NA	313	NM_007678	12606	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.120000	0.721393	
mm_108548.1	chr12	84409017	84409217	+	1	NA	NA	NA	49	NM_028377	72873	Mm.440428	NM_028377	ENSMUSG00000057265	Bbof1	2900006K08Rik|AI427784|Ccdc176	basal body orientation factor 1	protein-coding	0.125000	0.671642	
mm_77755.1	chr8	128488484	128488684	-	1	NA	NA	NA	129343	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.015000	0.402985	
mm_162415.1	chr1	87620359	87620559	+	1	NA	NA	NA	147	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.015000	0.597015	
mm_126832.1	chr15	88876834	88877034	+	1	NA	NA	NA	14740	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.005000	0.313433	
mm_59426.1	chr7	27124852	27125052	+	1	NA	NA	NA	4997	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.030000	0.557214	
mm_14905.1	chr2	150311345	150311545	+	1	NA	NA	NA	51320	NM_027017	69277	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	0.035000	0.537313	
mm_107489.1	chr12	38780736	38780936	+	1	NA	NA	NA	754	NM_007960	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.015000	0.388060	
mm_128131.1	chr15	31367454	31367654	-	1	NA	NA	NA	205	NM_001164441	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.095000	0.721393	
mm_26526.1	chr3	145988552	145988752	+	1	NA	NA	NA	782	NM_001166064	214804	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	0.120000	0.716418	
mm_78582.1	chr9	37247637	37247837	+	1	NA	NA	NA	8001	NM_020258	56857	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.005000	0.477612	
mm_31278.1	chr4	45804779	45804979	+	1	NA	NA	NA	5857	NM_028270	72535	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	0.010000	0.477612	
mm_156236.1	chrX	136138905	136139105	+	1	NA	NA	NA	-40	NM_212457	406217	Mm.336245	NM_212457	ENSMUSG00000047844	Bex4	-	brain expressed X-linked 4	protein-coding	0.060000	0.661692	
mm_131936.1	chr16	23613203	23613403	+	1	NA	NA	NA	3384	NM_023386	67775	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.020000	0.472637	
mm_163670.1	chr13	80884836	80885036	+	1	NA	NA	NA	1514	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.020000	0.353234	
mm_50954.1	chr6	58831459	58831659	+	1	NA	NA	NA	-2141	NM_028705	73998	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0.130000	0.751244	
mm_149529.1	chr19	12460995	12461195	+	1	NA	NA	NA	316	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.005000	0.402985	
mm_140715.1	chr17	15329829	15330029	-	1	NA	NA	NA	24532	NR_033511	100038481	Mm.387544	NR_033511		Gm10510	ENSMUSG00000073453	predicted gene 10510	ncRNA	0.005000	0.527363	
mm_9717.1	chr1	179803515	179803715	-	1	NA	NA	NA	400	NM_026375	226747	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.135000	0.726368	
mm_132279.1	chr16	33056376	33056576	+	1	NA	NA	NA	-6	NM_001130484	57808	Mm.19355	NM_021338	ENSMUSG00000060636	Rpl35a	2810431L15Rik|Rpl35	ribosomal protein L35A	protein-coding	0.075000	0.646766	
mm_104654.1	chr11	97575148	97575348	-	1	NA	NA	NA	-122	NM_018873	56013	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.185000	0.756219	
mm_125931.1	chr15	76247434	76247634	+	1	NA	NA	NA	-657	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.035000	0.606965	
mm_39214.1	chr4	156084216	156084416	-	1	NA	NA	NA	-24514	NR_132444	100415901	Mm.437006	NR_132444	ENSMUSG00000086549	Gm13648	OTTMUSG00000013217	predicted gene 13648	ncRNA	0.020000	0.512438	
mm_109070.1	chr12	104345314	104345514	+	1	NA	NA	NA	6928	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.005000	0.442786	-25(CTCTTTATGGCC,+,0.00)
mm_8994.1	chr1	165709630	165709830	-	1	NA	NA	NA	-1636	NM_001038846	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.020000	0.522388	-28(CCTTAAAGACTC,+,0.00)
mm_57003.1	chr6	121031542	121031742	-	1	NA	NA	NA	-32822	NR_138098	100043793	Mm.448053	NR_138098		Gm4651	-	predicted gene 4651	ncRNA	0.025000	0.517413	
mm_15359.1	chr2	156401320	156401520	+	1	NA	NA	NA	-8441	NR_024329	347740	Mm.324242	NR_024329		2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	0.040000	0.626866	
mm_108157.1	chr12	76328964	76329164	+	1	NA	NA	NA	4173	NM_001101471	238276	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.005000	0.517413	
mm_50603.1	chr6	49263147	49263347	+	1	NA	NA	NA	805	NM_001347209	101214	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha homolog (Drosophila)	protein-coding	0.095000	0.572139	-30(GACTCTTAAGGG,-,0.00)
mm_105237.1	chr11	102317949	102318149	-	1	NA	NA	NA	-762	NM_001044383	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.125000	0.805970	
mm_37054.1	chr4	116018042	116018242	-	1	NA	NA	NA	-240	NM_010173	14073	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	0.010000	0.492537	
mm_10417.1	chr2	13580039	13580239	+	1	NA	NA	NA	5828	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.030000	0.507463	
mm_163264.1	chr11	113684422	113684622	+	1	NA	NA	NA	110	NM_177777	276852	Mm.239566	NM_177777	ENSMUSG00000041623	D11Wsu47e	-	DNA segment, Chr 11, Wayne State University 47, expressed	protein-coding	0.090000	0.606965	
mm_47963.1	chr5	135735225	135735425	-	1	NA	NA	NA	564	NR_106001	102466791		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.000000	0.462687	-34(CCCCATATAAAA,-,0.00),-32(CCATATAAAAAC,-,0.00)
mm_163673.1	chr13	83042347	83042547	+	1	NA	NA	NA	-344114	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0.000000	0.343284	
mm_136949.1	chr17	14595790	14595990	+	1	NA	NA	NA	98372	NM_011581	21826	Mm.26688	NM_011581	ENSMUSG00000023885	Thbs2	TSP2|Thbs-2	thrombospondin 2	protein-coding	0.015000	0.422886	
mm_14474.1	chr2	131495573	131495773	+	1	NA	NA	NA	3811	NM_001177838	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.000000	0.398010	
mm_59048.1	chr7	19361135	19361335	+	1	NA	NA	NA	19	NM_001010836	333654	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0.090000	0.711443	
mm_165008.1	chr19	24556050	24556250	-	1	NA	NA	NA	-323	NM_008846	18719	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	0.150000	0.781095	
mm_41476.1	chr5	91962343	91962543	+	1	NA	NA	NA	113	NR_073442	68098	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0.035000	0.512438	
mm_152420.1	chr19	10673639	10673839	-	1	NA	NA	NA	4332	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.010000	0.537313	
mm_152578.1	chr19	11602096	11602296	-	1	NA	NA	NA	2608	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.000000	0.477612	
mm_150980.1	chr19	46502796	46502996	+	1	NA	NA	NA	1248	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.095000	0.681592	
mm_160258.1	chr7	108422447	108422647	+	1	NA	NA	NA	-26	NM_146738	258733	Mm.377663	NM_146738	ENSMUSG00000095239	Olfr497	MOR204-9	olfactory receptor 497	protein-coding	0.000000	0.378109	
mm_162364.1	chr1	65061744	65061944	+	1	NA	NA	NA	1596	NM_007776	12967	Mm.425031	NM_007776	ENSMUSG00000067299	Crygd	Aey4|Cryg-1|DGcry-1|Lop12	crystallin, gamma D	protein-coding	0.005000	0.373134	
mm_40940.1	chr5	76677200	76677400	+	1	NA	NA	NA	85586	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.025000	0.532338	
mm_144387.1	chr18	20667616	20667816	+	1	NA	NA	NA	2466	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.005000	0.467662	
mm_74135.1	chr8	123212784	123212984	+	1	NA	NA	NA	26	NM_177279	320869	Mm.258354	NM_177279	ENSMUSG00000048478	Spata33	4732415M23Rik|AI847264	spermatogenesis associated 33	protein-coding	0.110000	0.696517	
mm_71639.1	chr8	57511751	57511951	+	1	NA	NA	NA	8	NM_008252	97165	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.070000	0.621891	
mm_105991.1	chr11	115628045	115628245	-	1	NA	NA	NA	150	NM_001252394	67283	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.045000	0.562189	
mm_107760.1	chr12	59071718	59071918	+	1	NA	NA	NA	4899	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.005000	0.442786	
mm_113573.1	chr13	40321338	40321538	+	1	NA	NA	NA	-33427	NM_172143	218165	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	0.010000	0.447761	
mm_128744.1	chr15	64312704	64312904	-	1	NA	NA	NA	-131	NM_001276463	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.185000	0.815920	
mm_92014.1	chr10	62342568	62342768	-	1	NA	NA	NA	2061	NR_038038	70162	Mm.441212	NR_038038		Hk1os	2210417K05Rik	hexokinase 1, opposite strand	ncRNA	0.015000	0.597015	-75(GCTTATCTGGCC,+,0.00)
mm_158802.1	chrX	167254524	167254724	-	1	NA	NA	NA	9705	NM_001313761	170744	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	0.005000	0.407960	
mm_117298.1	chr13	67061055	67061255	-	1	NA	NA	NA	15	NM_001166218	78251	Mm.297247	NM_001166218	ENSMUSG00000090641	Zfp712	4921504N20Rik|mszf31|mszf89	zinc finger protein 712	protein-coding	0.070000	0.582090	
mm_88738.1	chr10	80264961	80265161	+	1	NA	NA	NA	70	NM_133188	70248	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	0.190000	0.810945	
mm_125118.1	chr15	28823415	28823615	+	1	NA	NA	NA	619749	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.015000	0.373134	
mm_165570.1	chr3	19561682	19561882	+	1	NA	NA	NA	30535	NM_001163537	66326	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0.020000	0.447761	
mm_17041.1	chr2	20673264	20673464	-	1	NA	NA	NA	153851	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.010000	0.407960	
mm_94546.1	chr11	10292114	10292314	+	1	NA	NA	NA	-821802	NM_177033	319922	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0.010000	0.378109	
mm_147383.1	chr18	43737407	43737607	-	1	NA	NA	NA	-270	NM_009258	20730	Mm.272	NM_009258	ENSMUSG00000024503	Spink1	Spink3|p12	serine peptidase inhibitor, Kazal type 1	protein-coding	0.005000	0.472637	
mm_160843.1	chr11	50603298	50603498	+	1	NA	NA	NA	1313	NM_175643	216725	Mm.110597	NM_175643	ENSMUSG00000036545	Adamts2	ADAM-TS 2|ADAM-TS2|ADAMTS-2|PC I-NP|PCINP|pNPI	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2	protein-coding	0.095000	0.701493	
mm_49226.1	chr6	15794350	15794550	+	1	NA	NA	NA	73789	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.000000	0.308458	
mm_83885.1	chr9	55470202	55470402	-	1	NA	NA	NA	41941	NM_145615	110842	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	0.005000	0.437811	
mm_118495.1	chr14	13284714	13284914	+	1	NA	NA	NA	34	NM_028052	72003	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.050000	0.656716	
mm_125887.1	chr15	75863133	75863333	+	1	NA	NA	NA	894	NM_026960	69146	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	0.020000	0.547264	
mm_27096.1	chr3	30211225	30211425	-	1	NA	NA	NA	-198121	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.005000	0.358209	
mm_7234.1	chr1	93441763	93441963	-	1	NA	NA	NA	3838	NM_001301364	110611	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0.000000	0.308458	
mm_134038.1	chr16	5050688	5050888	-	1	NA	NA	NA	720	NM_026666	170644	Mm.66356	NM_026666	ENSMUSG00000039473	Ubn1	1110029L11Rik|2610108L02Rik|AA673476|AW124741	ubinuclein 1	protein-coding	0.080000	0.616915	
mm_47856.1	chr5	134552365	134552565	-	1	NA	NA	NA	-31	NM_009990	269713	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.095000	0.711443	
mm_150877.1	chr19	45076008	45076208	+	1	NA	NA	NA	-31	NM_178929	107250	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.050000	0.542289	
mm_164023.1	chr14	75184795	75184995	+	1	NA	NA	NA	48470	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.005000	0.348259	
mm_30778.1	chr4	19280785	19280985	+	1	NA	NA	NA	35	NM_013927	30952	Mm.445778	NM_013927	ENSMUSG00000056494	Cngb3	CCNC2|CNG6|Cngbeta2	cyclic nucleotide gated channel beta 3	protein-coding	0.015000	0.398010	
mm_93657.1	chr10	117690127	117690327	-	1	NA	NA	NA	20531	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.005000	0.373134	
mm_116576.1	chr13	47105423	47105623	-	1	NA	NA	NA	698	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.055000	0.492537	
mm_64515.1	chr7	143823298	143823498	+	1	NA	NA	NA	231	NM_007856	13360	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	0.015000	0.512438	
mm_136728.1	chr17	8244973	8245173	+	1	NA	NA	NA	15	NM_001190338	12458	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	0.005000	0.467662	-66(GCTTTTAAATAG,+,0.00)
mm_106506.1	chr11	120453363	120453563	-	1	NA	NA	NA	37	NR_126089	18588	Mm.39200	NM_012065	ENSMUSG00000025386	Pde6g	Pdeg|p3AT	phosphodiesterase 6G, cGMP-specific, rod, gamma	protein-coding	0.020000	0.517413	
mm_88232.1	chr10	71131451	71131651	+	1	NA	NA	NA	28139	NM_031397	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	BicC family RNA binding protein 1	protein-coding	0.040000	0.542289	
mm_11073.1	chr2	27677122	27677322	+	1	NA	NA	NA	21	NM_011305	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.205000	0.825871	
mm_133016.1	chr16	56204232	56204432	+	1	NA	NA	NA	19	NM_174876	224224	Mm.151998	NM_174876	ENSMUSG00000035270	Impg2	IPM200|PG10.2|Rsbp|Spacrcan	interphotoreceptor matrix proteoglycan 2	protein-coding	0.015000	0.412935	
mm_95739.1	chr11	54691415	54691615	+	1	NA	NA	NA	95369	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.010000	0.522388	
mm_172387.1	chr7	133328728	133328928	-	1	NA	NA	NA	200577	NR_046279	74970	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	0.005000	0.467662	-34(GAGTATAAATAG,-,0.00)
mm_51801.1	chr6	88724356	88724556	+	1	NA	NA	NA	44	NM_011844	23945	Mm.272197	NM_011844	ENSMUSG00000033174	Mgll	AA589436|Magl|Mgl	monoglyceride lipase	protein-coding	0.165000	0.796020	
mm_48045.1	chr5	136458371	136458571	-	1	NA	NA	NA	-82668	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	0.005000	0.462687	
mm_44404.1	chr5	17847681	17847881	-	1	NA	NA	NA	2011	NM_001159557	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.402985	
mm_129342.1	chr15	77842006	77842206	-	1	NA	NA	NA	69	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.120000	0.721393	
mm_132582.1	chr16	38353019	38353219	+	1	NA	NA	NA	6120	NM_001017429	12856	Mm.27396	NM_001017429	ENSMUSG00000046516	Cox17	AI037035	cytochrome c oxidase assembly protein 17	protein-coding	0.000000	0.452736	
mm_91724.1	chr10	44602080	44602280	-	1	NA	NA	NA	-143432	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.015000	0.482587	
mm_158163.1	chrX	103482938	103483138	-	1	NA	NA	NA	195	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.010000	0.303483	
mm_66007.1	chr7	30563108	30563308	-	1	NA	NA	NA	-24	NM_025498	66340	Mm.86557	NM_025498	ENSMUSG00000036835	Psenen	1700023M09Rik|Pen-2	presenilin enhancer gamma secretase subunit	protein-coding	0.085000	0.577114	
mm_10183.1	chr2	4881429	4881629	+	1	NA	NA	NA	-35	NM_175400	109079	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0.100000	0.731343	59(CCGCCTTAAAGG,-,0.00),60(CGCCTTAAAGGG,-,0.00),62(CCTTAAAGGGAG,+,0.00),79(CGCTCTTAAAGG,-,0.00),80(GCTCTTAAAGGG,+,0.00),80(GCTCTTAAAGGG,-,0.00)
mm_98684.1	chr11	96292056	96292256	+	1	NA	NA	NA	5510	NM_010460	15415	Mm.390366	NM_010460	ENSMUSG00000038721	Hoxb7	AI325018|Hox-2.3	homeobox B7	protein-coding	0.005000	0.502488	-33(TACTATAAAAGA,-,0.00)
mm_6164.1	chr1	65061824	65062024	-	1	NA	NA	NA	1516	NM_007776	12967	Mm.425031	NM_007776	ENSMUSG00000067299	Crygd	Aey4|Cryg-1|DGcry-1|Lop12	crystallin, gamma D	protein-coding	0.030000	0.482587	
mm_171489.1	chr4	146101601	146101801	+	1	NA	NA	NA	4389	NM_001037926	626316	Mm.270762	NM_001037926	ENSMUSG00000066009	Zfp987	Gm13051|OTTMUSG00000010104|OTTMUSG00000010173	zinc finger protein 987	protein-coding	0.010000	0.527363	
mm_121200.1	chr14	103051767	103051967	+	1	NA	NA	NA	4855	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.015000	0.482587	-72(GCTTTAAAGACC,+,0.00)
mm_65860.1	chr7	29344808	29345008	-	1	NA	NA	NA	40903	NM_013874	29861	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.020000	0.472637	
mm_78496.1	chr9	32728478	32728678	+	1	NA	NA	NA	32536	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.010000	0.388060	
mm_104705.1	chr11	97999281	97999481	-	1	NA	NA	NA	-3208	NM_207231	217151	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.020000	0.547264	
mm_126306.1	chr15	79527641	79527841	+	1	NA	NA	NA	5176	NM_152806	67040	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.000000	0.308458	
mm_23007.1	chr3	34158627	34158827	+	1	NA	NA	NA	-77373	NM_026332	67713	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.020000	0.492537	
mm_148933.1	chr19	7018661	7018861	+	1	NA	NA	NA	708	NM_153795	108101	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.045000	0.577114	
mm_131425.1	chr16	14708222	14708422	+	1	NA	NA	NA	2463	NM_011415	20583	Mm.4272	NM_011415	ENSMUSG00000022676	Snai2	Slug|Slugh|Snail2	snail family zinc finger 2	protein-coding	0.010000	0.412935	
mm_161006.1	chr11	117782785	117782985	+	1	NA	NA	NA	227	NM_001195088	217356	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0.030000	0.522388	
mm_98236.1	chr11	88099198	88099398	+	1	NA	NA	NA	152	NM_198013	103841	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	0.200000	0.820896	
mm_113286.1	chr13	30166264	30166464	+	1	NA	NA	NA	29874	NM_153546	218121	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	0.015000	0.467662	
mm_75344.1	chr8	43306945	43307145	-	1	NA	NA	NA	-36	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.040000	0.601990	
mm_99545.1	chr11	103344689	103344889	+	1	NA	NA	NA	36	NR_045346	653030	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648|OTTMUSG00000003073	Rho GTPase activating protein 27, opposite strand 3	ncRNA	0.015000	0.592040	
mm_155162.1	chrX	52988077	52988277	+	1	NA	NA	NA	99	NM_013556	15452	Mm.299381	NM_013556	ENSMUSG00000025630	Hprt	C81579|HPGRT|Hprt1	hypoxanthine guanine phosphoribosyl transferase	protein-coding	0.100000	0.676617	
mm_84108.1	chr9	58313081	58313281	-	1	NA	NA	NA	31	NM_010729	16949	Mm.250492	NM_010729	ENSMUSG00000032334	Loxl1	Loxl	lysyl oxidase-like 1	protein-coding	0.050000	0.646766	
mm_40708.1	chr5	65863507	65863707	+	1	NA	NA	NA	38	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.045000	0.567164	
mm_134016.1	chr16	4879757	4879957	-	1	NA	NA	NA	-6	NM_145359	207740	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.135000	0.676617	
mm_38742.1	chr4	145261312	145261512	-	1	NA	NA	NA	-14542	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.005000	0.507463	
mm_55797.1	chr6	82753944	82754144	-	1	NA	NA	NA	20410	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.030000	0.507463	24(GCTTTTAAACAA,+,0.00)
mm_90831.1	chr10	8290127	8290327	-	1	NA	NA	NA	228598	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.010000	0.368159	
mm_126235.1	chr15	78967399	78967599	+	1	NA	NA	NA	-15557	NM_001024716	110253	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.030000	0.587065	
mm_93230.1	chr10	95323439	95323639	-	1	NA	NA	NA	170	NM_001330138	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.050000	0.582090	
mm_12146.1	chr2	61804662	61804862	+	1	NA	NA	NA	309	NM_009322	21375	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.025000	0.502488	
mm_150094.1	chr19	29454393	29454593	+	1	NA	NA	NA	43574	NM_021396	58205	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.035000	0.532338	
mm_106547.1	chr11	120579283	120579483	-	1	NA	NA	NA	2237	NM_133796	192662	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.040000	0.582090	
mm_39864.1	chr5	31048550	31048750	+	1	NA	NA	NA	10	NM_027855	381629	Mm.28144	NM_027855	ENSMUSG00000013622	Atraid	0610007C21Rik|AI316792|Apr3|HSPC013|p18	all-trans retinoic acid induced differentiation factor	protein-coding	0.095000	0.671642	
mm_121709.1	chr14	15934804	15935004	-	1	NA	NA	NA	-314410	NM_021504	59007	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	0.000000	0.472637	
mm_170857.1	chr2	180604893	180605093	+	1	NA	NA	NA	6771	NM_009936	12841	Mm.141312	NM_009936	ENSMUSG00000027570	Col9a3	AV006866	collagen, type IX, alpha 3	protein-coding	0.000000	0.542289	
mm_4368.1	chr1	172087380	172087580	+	1	NA	NA	NA	-4731	NM_021607	59287	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	0.005000	0.363184	
mm_18506.1	chr2	62611745	62611945	-	1	NA	NA	NA	34410	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.020000	0.338308	-84(GTTTTTAAGGTA,+,0.00)
mm_141946.1	chr17	35066080	35066280	-	1	NA	NA	NA	4	NM_001033221	106722	Mm.390956	NM_001033221	ENSMUSG00000073414	G6b	AU023871|C6orf25|Ng31	immunoreceptor tyrosine-based inhibitory motif (ITIM) containing platelet receptor	protein-coding	0.030000	0.621891	
mm_117607.1	chr13	90886700	90886900	-	1	NA	NA	NA	18555	NM_001145879	435376	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	0.045000	0.407960	
mm_46757.1	chr5	112246445	112246645	-	1	NA	NA	NA	5973	NM_001312884	12959	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0.025000	0.507463	
mm_99482.1	chr11	102605890	102606090	+	1	NA	NA	NA	1559	NM_020510	57265	Mm.36416	NM_020510	ENSMUSG00000050288	Fzd2	AL033370|AW456835|Fz10|Fzd10|Mfz10|Mfz10a	frizzled class receptor 2	protein-coding	0.090000	0.611940	
mm_114184.1	chr13	55650365	55650565	+	1	NA	NA	NA	15466	NM_001282055	212880	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	0.035000	0.497512	
mm_86136.1	chr9	116618693	116618893	-	1	NA	NA	NA	-443430	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.015000	0.462687	
mm_165992.1	chr4	109676669	109676869	+	1	NA	NA	NA	142	NM_007983	14084	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	0.125000	0.736318	
mm_19320.1	chr2	90564416	90564616	-	1	NA	NA	NA	16131	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.025000	0.547264	
mm_135818.1	chr16	58408223	58408423	-	1	NA	NA	NA	-212	NM_028523	73379	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.095000	0.676617	
mm_131778.1	chr16	22895145	22895345	+	1	NA	NA	NA	-859	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.045000	0.537313	
mm_113042.1	chr13	23571751	23571951	+	1	NA	NA	NA	451	NM_178196	319181	Mm.261673	NM_178196	ENSMUSG00000058385	Hist1h2bg	-	histone cluster 1, H2bg	protein-coding	0.020000	0.452736	
mm_160728.1	chr10	75935198	75935398	+	1	NA	NA	NA	-275	NM_175329	103172	Mm.333849	NM_175329	ENSMUSG00000049422	Chchd10	1620401E04Rik|AI267078|Ndg2	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding	0.005000	0.467662	
mm_158597.1	chrX	151344720	151344920	-	1	NA	NA	NA	597	NM_198105	207375	Mm.391339	NM_198105	ENSMUSG00000025262	Fam120c	D930001I21Rik|ORF34	family with sequence similarity 120, member C	protein-coding	0.070000	0.686567	
mm_99453.1	chr11	102434123	102434323	+	1	NA	NA	NA	3901	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.015000	0.577114	
mm_167309.1	chr8	61609946	61610146	+	1	NA	NA	NA	-18877	NM_001293774	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.000000	0.442786	
mm_4203.1	chr1	171229776	171229976	+	1	NA	NA	NA	4473	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.020000	0.527363	
mm_12614.1	chr2	74691827	74692027	+	1	NA	NA	NA	36	NM_013554	15430	Mm.24420	NM_013554	ENSMUSG00000050368	Hoxd10	AI385591|AI874987|Hox-4.5|Hox-5.3	homeobox D10	protein-coding	0.020000	0.462687	
mm_93631.1	chr10	117280698	117280898	-	1	NA	NA	NA	1474	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.025000	0.398010	
mm_102800.1	chr11	68854192	68854392	-	1	NA	NA	NA	-1161	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.010000	0.552239	
mm_128866.1	chr15	72819915	72820115	-	1	NA	NA	NA	-9691	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.005000	0.378109	-8(TTTTTTATAGAA,+,0.00)
mm_43195.1	chr5	129019644	129019844	+	1	NA	NA	NA	-412	NM_009391	19384	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	0.115000	0.691542	
mm_124150.1	chr14	93079620	93079820	-	1	NA	NA	NA	809168	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.318408	
mm_75193.1	chr8	38661434	38661634	-	1	NA	NA	NA	-26	NM_145841	244431	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding	0.015000	0.487562	-98(TCTTTAAGACCC,+,0.00)
mm_125221.1	chr15	34083250	34083450	+	1	NA	NA	NA	631	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.100000	0.651741	
mm_127070.1	chr15	97373953	97374153	+	1	NA	NA	NA	-126766	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.015000	0.482587	
mm_135411.1	chr16	45018872	45019072	-	1	NA	NA	NA	-75081	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.000000	0.412935	
mm_112414.1	chr13	3924578	3924778	+	1	NA	NA	NA	-17	NM_001033879	238463	Mm.313659	NM_001033879	ENSMUSG00000021216	Tubal3	-	tubulin, alpha-like 3	protein-coding	0.020000	0.492537	
mm_82670.1	chr9	22130474	22130674	-	1	NA	NA	NA	24	NM_007388	11433	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.020000	0.552239	
mm_31167.1	chr4	43445917	43446117	+	1	NA	NA	NA	3740	NM_011571	21754	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.015000	0.582090	
mm_110477.1	chr12	51851641	51851841	-	1	NA	NA	NA	-22205	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.015000	0.467662	
mm_69461.1	chr7	133123765	133123965	-	1	NA	NA	NA	-382	NM_009980	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.075000	0.572139	
mm_119104.1	chr14	30951361	30951561	+	1	NA	NA	NA	84	NM_011849	23955	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	0.090000	0.651741	
mm_81787.1	chr9	114781006	114781206	+	1	NA	NA	NA	887	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.030000	0.547264	
mm_112941.1	chr13	20986303	20986503	+	1	NA	NA	NA	86896	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.010000	0.402985	-98(GCTTTTCAGGGC,+,0.00)
mm_168948.1	chr12	75978348	75978548	-	1	NA	NA	NA	69345	NR_039560	100628610		NR_039560	ENSMUSG00000092922	Mir5101	mmu-mir-5101|mu-mir-5101	microRNA 5101	ncRNA	0.000000	0.447761	
mm_111457.1	chr12	98386096	98386296	-	1	NA	NA	NA	117561	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.005000	0.412935	
mm_87214.1	chr10	39822474	39822674	+	1	NA	NA	NA	76664	NR_033628	213332	Mm.484359	NR_033628		Mfsd4b4	AA474331	major facilitator superfamily domain containing 4B4	pseudo	0.000000	0.348259	-32(CTTTATAAAAAG,-,0.00)
mm_75180.1	chr8	36952150	36952350	-	1	NA	NA	NA	192	NM_001194940	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.035000	0.522388	
mm_62565.1	chr7	104218738	104218938	+	1	NA	NA	NA	43	NM_001013616	94088	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	0.040000	0.601990	
mm_25342.1	chr3	106721775	106721975	+	1	NA	NA	NA	193	NM_001286685	321000	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	0.065000	0.611940	
mm_141716.1	chr17	34027960	34028160	-	1	NA	NA	NA	-5	NM_013543	14979	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding	0.060000	0.676617	
mm_114613.1	chr13	75847080	75847280	+	1	NA	NA	NA	7294	NM_053108	93692	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.015000	0.492537	
mm_71745.1	chr8	65209010	65209210	+	1	NA	NA	NA	-79573	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA	0.005000	0.412935	
mm_142992.1	chr17	56300139	56300339	-	1	NA	NA	NA	47	NM_029799	76920	Mm.329132	NM_029799	ENSMUSG00000073380	Arrdc5	1700013E09Rik	arrestin domain containing 5	protein-coding	0.035000	0.592040	
mm_149161.1	chr19	9018106	9018306	+	1	NA	NA	NA	302	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.020000	0.512438	
mm_17141.1	chr2	25095003	25095203	-	1	NA	NA	NA	102	NM_001163626	241275	Mm.218774	NM_172204	ENSMUSG00000036805	Noxa1	NY-CO-31|SDCCAG31	NADPH oxidase activator 1	protein-coding	0.025000	0.557214	
mm_6257.1	chr1	69103078	69103278	-	1	NA	NA	NA	4881	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	0.005000	0.333333	
mm_117159.1	chr13	61999444	61999644	-	1	NA	NA	NA	-130346	NM_001039239	630579	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 80	protein-coding	0.005000	0.398010	
mm_141516.1	chr17	31681434	31681634	-	1	NA	NA	NA	3603	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.010000	0.542289	
mm_122934.1	chr14	54962663	54962863	-	1	NA	NA	NA	3844	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.025000	0.532338	
mm_47444.1	chr5	123394537	123394737	-	1	NA	NA	NA	-161	NM_133917	208104	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.060000	0.611940	-97(GCCTCTTAAAGG,-,0.00),-96(CCTCTTAAAGGT,+,0.00)
mm_122335.1	chr14	37125221	37125421	-	1	NA	NA	NA	9818	NM_001199122	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.000000	0.363184	
mm_144400.1	chr18	20762575	20762775	+	1	NA	NA	NA	-16271	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.020000	0.532338	
mm_113729.1	chr13	43962115	43962315	+	1	NA	NA	NA	-158952	NR_045285	328235	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA	0.005000	0.482587	
mm_117213.1	chr13	64089162	64089362	-	1	NA	NA	NA	-61	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.015000	0.482587	
mm_10985.1	chr2	26206581	26206781	+	1	NA	NA	NA	-106	NM_001039653	16871	Mm.386765	NM_010711	ENSMUSG00000026934	Lhx3	Lim3|P-LIM|mLIM3|mLim-3	LIM homeobox protein 3	protein-coding	0.095000	0.721393	
mm_131184.1	chr16	7217566	7217766	+	1	NA	NA	NA	147831	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.015000	0.567164	
mm_2887.1	chr1	131867156	131867356	+	1	NA	NA	NA	-21	NM_144875	226422	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	0.050000	0.542289	
mm_8295.1	chr1	143675941	143676141	-	1	NA	NA	NA	26852	NM_145991	214498	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	0.015000	0.368159	
mm_163609.1	chr13	49969915	49970115	+	1	NA	NA	NA	280293	NM_001033438	380882	Mm.425809	NM_001033438	ENSMUSG00000095300	Gm906	-	predicted gene 906	protein-coding	0.010000	0.507463	
mm_37590.1	chr4	126468601	126468801	-	1	NA	NA	NA	-118	NM_153403	236511	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	0.115000	0.736318	
mm_23381.1	chr3	55782440	55782640	+	1	NA	NA	NA	30	NM_010750	17116	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.045000	0.522388	
mm_104608.1	chr11	97187839	97188039	-	1	NA	NA	NA	-47	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.115000	0.726368	
mm_1542.1	chr1	72852058	72852258	+	1	NA	NA	NA	22707	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.035000	0.611940	
mm_57606.1	chr6	128025664	128025864	-	1	NA	NA	NA	117814	NM_175414	109246	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597	tetraspanin 9	protein-coding	0.045000	0.517413	
mm_96092.1	chr11	60417067	60417267	+	1	NA	NA	NA	22	NM_025757	66771	Mm.29950	NM_025757	ENSMUSG00000018415	Gid4	4933439F18Rik	GID complex subunit 4, VID24 homolog	protein-coding	0.130000	0.681592	
mm_166762.1	chr6	129385371	129385571	-	1	NA	NA	NA	32	NM_027709	71183	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	0.020000	0.452736	-93(TCCTTGAAAAGG,-,0.00)
mm_113614.1	chr13	41487018	41487218	+	1	NA	NA	NA	242	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.015000	0.557214	
mm_89511.1	chr10	94147837	94148037	+	1	NA	NA	NA	6	NM_011629	22025	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	0.090000	0.666667	
mm_77389.1	chr8	120177359	120177559	-	1	NA	NA	NA	10	NM_001033980	436062	Mm.334852	NM_001033980	ENSMUSG00000042269	Fam92b	1700120B06Rik	family with sequence similarity 92, member B	protein-coding	0.010000	0.656716	
mm_149981.1	chr19	29121701	29121901	+	1	NA	NA	NA	-13478	NR_029778	724062		NR_029778	ENSMUSG00000065556	Mir101b	Mirn101b|mir-101b	microRNA 101b	ncRNA	0.030000	0.562189	
mm_114914.1	chr13	95009886	95010086	+	1	NA	NA	NA	33642	NM_172590	218460	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.010000	0.567164	
mm_22183.1	chr2	173218726	173218926	-	1	NA	NA	NA	96	NM_021394	58203	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.005000	0.567164	
mm_119368.1	chr14	41122444	41122644	+	1	NA	NA	NA	-9244	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.025000	0.497512	
mm_124026.1	chr14	76673755	76673955	-	1	NA	NA	NA	-3713	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.025000	0.477612	
mm_134832.1	chr16	26105716	26105916	-	1	NA	NA	NA	-32	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.110000	0.711443	-63(CCCTTTAAGAGC,+,0.00),-63(CCCTTTAAGAGC,-,0.00),-62(CCTTTAAGAGCG,+,0.00)
mm_103707.1	chr11	79516599	79516799	-	1	NA	NA	NA	7063	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.015000	0.353234	
mm_153972.1	chr19	47859416	47859616	-	1	NA	NA	NA	4543	NM_010362	14873	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0.030000	0.437811	
mm_30851.1	chr4	25010283	25010483	+	1	NA	NA	NA	36964	NM_030733	81006	Mm.160412	NM_030733	ENSMUSG00000040372	Gpr63	PSP24beta|Psp24-2	G protein-coupled receptor 63	protein-coding	0.005000	0.452736	
mm_121161.1	chr14	103008144	103008344	+	1	NA	NA	NA	25559	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.010000	0.512438	
mm_165813.1	chr3	145758699	145758899	+	1	NA	NA	NA	107	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.140000	0.756219	
mm_25677.1	chr3	122076848	122077048	+	1	NA	NA	NA	32488	NM_007378	11304	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0.000000	0.402985	
mm_111815.1	chr12	105685036	105685236	-	1	NA	NA	NA	105	NM_029654	76559	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	0.115000	0.681592	
mm_163631.1	chr13	58401945	58402145	-	1	NA	NA	NA	124	NM_001301343	15387	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.160000	0.756219	
mm_20398.1	chr2	129198478	129198678	-	1	NA	NA	NA	-195	NM_015747	20515	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.095000	0.746269	
mm_72618.1	chr8	84636308	84636508	+	1	NA	NA	NA	26444	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.010000	0.592040	
mm_142276.1	chr17	39848201	39848401	-	1	NA	NA	NA	5304	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.105000	0.706468	
mm_118607.1	chr14	20843139	20843339	+	1	NA	NA	NA	6577	NM_008873	18792	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0.005000	0.273632	-75(CTTTTTATATAG,+,0.00)
mm_144724.1	chr18	35154369	35154569	+	1	NA	NA	NA	35557	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.015000	0.422886	
mm_137334.1	chr17	25089357	25089557	+	1	NA	NA	NA	-8343	NM_001001183	407831	Mm.34379	NM_001001183	ENSMUSG00000024168	Tmem204	-	transmembrane protein 204	protein-coding	0.035000	0.567164	
mm_158046.1	chrX	98890928	98891128	-	1	NA	NA	NA	-3	NM_001313755	94190	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	0.065000	0.611940	
mm_92794.1	chr10	81350153	81350353	-	1	NA	NA	NA	173	NM_001163165	15353	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0.100000	0.731343	
mm_164179.1	chr15	76246483	76246683	-	1	NA	NA	NA	-224	NM_023168	66168	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	0.055000	0.592040	
mm_46912.1	chr5	114380373	114380573	-	1	NA	NA	NA	32	NM_001159941	330171	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	0.115000	0.716418	
mm_27264.1	chr3	38484712	38484912	-	1	NA	NA	NA	4	NM_001167883	99696	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.135000	0.800995	
mm_13788.1	chr2	118814149	118814349	+	1	NA	NA	NA	246	NM_026412	51944	Mm.252695	NM_026412	ENSMUSG00000027331	Knstrn	1700025D04Rik|C15orf23|D2Ertd750e|SKAP|Traf4af1	kinetochore-localized astrin/SPAG5 binding	protein-coding	0.095000	0.646766	
mm_99884.1	chr11	109439976	109440176	+	1	NA	NA	NA	-2	NR_040680	100503496	Mm.265874	NR_040680		LOC100503496	-	uncharacterized LOC100503496	ncRNA	0.085000	0.631841	
mm_158324.1	chrX	133900086	133900286	-	1	NA	NA	NA	-1757	NM_019656	56496	Mm.46701	NM_019656	ENSMUSG00000067377	Tspan6	6720473L21Rik|AI316786|T245|TSPAN-6|Tm4sf|Tm4sf6	tetraspanin 6	protein-coding	0.005000	0.467662	
mm_54027.1	chr6	11492961	11493161	-	1	NA	NA	NA	414385	NM_010886	17992	Mm.415865	NM_010886	ENSMUSG00000029632	Ndufa4	MLRQ	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4	protein-coding	0.000000	0.343284	-69(GTCTTGAAAAGG,-,0.00)
mm_65399.1	chr7	25179777	25179977	-	1	NA	NA	NA	24808	NR_045848	434147	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	0.115000	0.756219	
mm_95075.1	chr11	32642428	32642628	+	1	NA	NA	NA	-27	NM_001271348	103583	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.105000	0.646766	
mm_9378.1	chr1	172210221	172210421	-	1	NA	NA	NA	-3517	NM_011063	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.065000	0.552239	
mm_115836.1	chr13	21287009	21287209	-	1	NA	NA	NA	5577	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.005000	0.412935	
mm_170375.1	chr1	85526524	85526724	+	1	NA	NA	NA	72186	NM_030194	109032	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|ENSMUSG00000075603|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.010000	0.557214	
mm_20124.1	chr2	121271276	121271476	-	1	NA	NA	NA	31	NM_001290830	27223	Mm.215389	NM_013735	ENSMUSG00000043909	Trp53bp1	53BP1|Tp53bp1|m53BP1|p53BP1	transformation related protein 53 binding protein 1	protein-coding	0.090000	0.631841	
mm_15119.1	chr2	153741223	153741423	+	1	NA	NA	NA	36	NM_007896	13589	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	0.175000	0.726368	-71(CTCTATAAAAGG,-,0.00)
mm_91744.1	chr10	49272721	49272921	-	1	NA	NA	NA	-176978	NR_046212	100418235	Mm.185993	NR_046212		C130030K03Rik	-	proteasome (prosome, macropain) subunit, alpha type 6 pseudogene	pseudo	0.025000	0.452736	
mm_119520.1	chr14	47473404	47473604	+	1	NA	NA	NA	943	NM_001146085	78938	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	0.015000	0.417910	
mm_133021.1	chr16	57121371	57121571	+	1	NA	NA	NA	-243	NM_138599	28185	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70 homolog A (yeast)	protein-coding	0.050000	0.641791	
mm_88612.1	chr10	79824612	79824812	+	1	NA	NA	NA	3691	NM_030218	78906	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.015000	0.562189	
mm_87612.1	chr10	57785437	57785637	+	1	NA	NA	NA	614	NM_021272	12140	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.020000	0.482587	
mm_53210.1	chr6	125711402	125711602	+	1	NA	NA	NA	21083	NM_153589	243634	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.060000	0.616915	
mm_89300.1	chr10	87913654	87913854	+	1	NA	NA	NA	52643	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.035000	0.527363	
mm_56464.1	chr6	98929296	98929496	-	1	NA	NA	NA	98902	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.010000	0.353234	
mm_8952.1	chr1	164457903	164458103	-	1	NA	NA	NA	352	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.170000	0.800995	
mm_107142.1	chr12	21417780	21417980	+	1	NA	NA	NA	-444	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.075000	0.631841	
mm_22264.1	chr2	178407390	178407590	-	1	NA	NA	NA	168	NM_177191	320558	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding	0.095000	0.691542	
mm_35430.1	chr4	36321068	36321268	-	1	NA	NA	NA	324285	NR_030545	100124458		NR_030545	ENSMUSG00000077851	Mir876	Mirn876|mir-876|mmu-mir-876	microRNA 876	ncRNA	0.000000	0.338308	
mm_105088.1	chr11	100850651	100850851	-	1	NA	NA	NA	-166	NM_001113563	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.140000	0.781095	
mm_161869.1	chr18	36930063	36930263	+	1	NA	NA	NA	-122	NM_054072	116731	Mm.308500	NM_054072	ENSMUSG00000103442	Pcdha1	CNR	protocadherin alpha 1	protein-coding	0.030000	0.427861	
mm_168984.1	chr12	93317397	93317597	+	1	NA	NA	NA	127326	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0.010000	0.417910	
mm_120188.1	chr14	61519266	61519466	+	1	NA	NA	NA	26678	NR_045714	75349	Mm.233613	NR_045714		4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	0.000000	0.487562	
mm_80762.1	chr9	95559226	95559426	+	1	NA	NA	NA	-491	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.100000	0.711443	
mm_56677.1	chr6	113719782	113719982	-	1	NA	NA	NA	29	NM_021488	58991	Mm.379095	NM_021488	ENSMUSG00000064177	Ghrl	2210006E23Rik|Ghr|MTLRP|MTLRPAP|m46	ghrelin	protein-coding	0.015000	0.442786	-33(TCCTATATAAGG,-,0.00)
mm_53547.1	chr6	136828335	136828535	+	1	NA	NA	NA	-219	NM_021714	60321	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	0.035000	0.427861	
mm_127287.1	chr15	100038598	100038798	+	1	NA	NA	NA	34	NM_001159361	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.150000	0.781095	
mm_70747.1	chr8	19198604	19198804	+	1	NA	NA	NA	0	NM_019728	56519	Mm.45276	NM_019728	ENSMUSG00000059230	Defb4	2310001F05Rik|BD-4	defensin beta 4	protein-coding	0.000000	0.497512	-32(CACTATATAAGG,-,0.00)
mm_12466.1	chr2	71389159	71389359	+	1	NA	NA	NA	-1	NM_026115	107435	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0.095000	0.631841	
mm_90069.1	chr10	116346785	116346985	+	1	NA	NA	NA	45511	NM_029928	19263	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0.040000	0.527363	
mm_117648.1	chr13	92794717	92794917	-	1	NA	NA	NA	1	NM_011582	21828	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	0.115000	0.781095	
mm_125038.1	chr15	25773982	25774182	+	1	NA	NA	NA	-69216	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.020000	0.512438	81(CTTTTTAAAGCA,+,0.00)
mm_27081.1	chr3	30012931	30013131	-	1	NA	NA	NA	173	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.045000	0.606965	
mm_125337.1	chr15	39005934	39006134	+	1	NA	NA	NA	-246	NM_001162494	14368	Mm.4769	NM_008056	ENSMUSG00000022297	Fzd6	Fz6	frizzled class receptor 6	protein-coding	0.045000	0.562189	
mm_7084.1	chr1	88509815	88510015	-	1	NA	NA	NA	151	NM_008132	14659	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding	0.015000	0.432836	
mm_80026.1	chr9	68653533	68653733	+	1	NA	NA	NA	-153	NM_001289917	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.105000	0.626866	
mm_167512.1	chr9	13765818	13766018	+	1	NA	NA	NA	16737	NR_024025	77116	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.010000	0.383085	-58(TCCTAGAAAAGC,-,0.00)
mm_92191.1	chr10	68116868	68117068	-	1	NA	NA	NA	137370	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.005000	0.432836	75(GTTTTAATAGTG,+,0.00)
mm_110937.1	chr12	76547761	76547961	-	1	NA	NA	NA	64	NR_046044	100504549	Mm.440349	NR_046044		AI463170	-	expressed sequence AI463170	ncRNA	0.020000	0.527363	
mm_121807.1	chr14	20347926	20348126	-	1	NA	NA	NA	95	NM_027475	70601	Mm.35105	NM_027475	ENSMUSG00000021810	Ecd	5730461K03Rik|Hsgt1	ecdysoneless homolog (Drosophila)	protein-coding	0.070000	0.606965	
mm_109637.1	chr12	112784983	112785183	+	1	NA	NA	NA	-23892	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.005000	0.407960	
mm_76310.1	chr8	84656807	84657007	-	1	NA	NA	NA	5945	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.070000	0.611940	
mm_42164.1	chr5	112259230	112259430	+	1	NA	NA	NA	3510	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.065000	0.587065	
mm_133149.1	chr16	70313994	70314194	+	1	NA	NA	NA	145	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.130000	0.751244	-63(CGCTATAAAGGG,-,0.00)
mm_172609.1	chr8	15652211	15652411	+	1	NA	NA	NA	516527	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0.040000	0.562189	
mm_45540.1	chr5	72813860	72814060	-	1	NA	NA	NA	54488	NM_001113461	21682	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.065000	0.527363	
mm_149253.1	chr19	10389314	10389514	+	1	NA	NA	NA	324	NM_173068	54525	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0.150000	0.825871	
mm_146100.1	chr18	73948220	73948420	+	1	NA	NA	NA	-69587	NR_045390	77855	Mm.410760	NR_045390	ENSMUSG00000090263	D730045A05Rik	-	RIKEN cDNA D730045A05 gene	ncRNA	0.020000	0.537313	
mm_148682.1	chr19	5688688	5688888	+	1	NA	NA	NA	120	NM_144868	104401	Mm.329650	NM_144868	ENSMUSG00000054874	Pcnx3	Pcnxl3|mKIAA4073	pecanex homolog 3	protein-coding	0.085000	0.547264	
mm_120236.1	chr14	62893989	62894189	+	1	NA	NA	NA	28547	NR_105860	102465311		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.000000	0.477612	-19(GACCATAAAAAG,-,0.00),-17(CCATAAAAAGGG,+,0.00)
mm_173288.1	chrY	2073207	2073407	-	1	NA	NA	NA	97102	NM_009571	22768	Mm.411381	NM_009571	ENSMUSG00000000103	Zfy2	Zfy-2	zinc finger protein 2, Y-linked	protein-coding	0.020000	0.487562	
mm_16057.1	chr2	167777999	167778199	+	1	NA	NA	NA	86922	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.035000	0.517413	
mm_35857.1	chr4	49451154	49451354	-	1	NA	NA	NA	-145	NM_001164565	230161	Mm.30101	NM_001164565	ENSMUSG00000070985	Acnat1	AI132189	acyl-coenzyme A amino acid N-acyltransferase 1	protein-coding	0.000000	0.522388	
mm_367.1	chr1	33922372	33922572	+	1	NA	NA	NA	14247	NM_001276764	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.010000	0.308458	
mm_83935.1	chr9	56635923	56636123	-	1	NA	NA	NA	-375	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.080000	0.631841	
mm_115451.1	chr13	118714590	118714790	+	1	NA	NA	NA	-9	NM_008002	14165	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	0.025000	0.567164	
mm_124245.1	chr14	101608724	101608924	-	1	NA	NA	NA	367	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.100000	0.736318	
mm_17719.1	chr2	32387669	32387869	-	1	NA	NA	NA	-30	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.010000	0.597015	-33(GCCCATAAAAAG,-,0.00),-31(CCATAAAAAGCC,+,0.00)
mm_158234.1	chrX	106485078	106485278	-	1	NA	NA	NA	51	NM_001007580	333564	Mm.298000	NM_001007580	ENSMUSG00000033737	Fndc3c1	Fndc3c|Gm784	fibronectin type III domain containing 3C1	protein-coding	0.050000	0.557214	
mm_11422.1	chr2	31759861	31760061	+	1	NA	NA	NA	22	NM_009594	11350	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.090000	0.736318	
mm_77793.1	chr9	3027665	3027865	+	1	NA	NA	NA	10978	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.010000	0.348259	
mm_88380.1	chr10	76442321	76442521	+	1	NA	NA	NA	491	NM_008787	18541	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	0.095000	0.611940	
mm_150452.1	chr19	38132680	38132880	+	1	NA	NA	NA	-1	NM_033614	110855	Mm.450141	NM_033614	ENSMUSG00000024992	Pde6c	cpfl1	phosphodiesterase 6C, cGMP specific, cone, alpha prime	protein-coding	0.005000	0.437811	
mm_141624.1	chr17	32916900	32917100	-	1	NA	NA	NA	87	NM_022434	64385	Mm.486449	NM_022434	ENSMUSG00000024292	Cyp4f14	1300014O15Rik|cyp4f-14	cytochrome P450, family 4, subfamily f, polypeptide 14	protein-coding	0.005000	0.487562	
mm_158847.1	chrX	169978844	169979044	-	1	NA	NA	NA	-27	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.015000	0.462687	-89(GCTTTTAGAAAC,+,0.00),-36(CAGTTTTAAAGA,-,0.00)
mm_172841.1	chr9	3258806	3259006	-	1	NA	NA	NA	-59093	NR_027988	114673	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0.015000	0.457711	-13(CCCCAGAAAAGG,-,0.00)
mm_7328.1	chr1	102628179	102628379	-	1	NA	NA	NA	1472511	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0.015000	0.452736	
mm_39598.1	chr5	23502853	23503053	+	1	NA	NA	NA	68524	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.020000	0.542289	
mm_76064.1	chr8	78147364	78147564	-	1	NA	NA	NA	-65878	NM_183096	73301	Mm.61243	NM_183096	ENSMUSG00000037101	Ttc29	1700031F13Rik	tetratricopeptide repeat domain 29	protein-coding	0.010000	0.487562	66(CCTTTAAGACAC,+,0.00)
mm_169763.1	chr15	98631645	98631845	+	1	NA	NA	NA	-583	NM_001044741	12297	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0.055000	0.626866	
mm_69394.1	chr7	132154548	132154748	-	1	NA	NA	NA	93	NM_018867	55987	Mm.471654	NM_018867	ENSMUSG00000030862	Cpxm2	4632435C11Rik|CPX-2|Cpx2	carboxypeptidase X 2 (M14 family)	protein-coding	0.105000	0.751244	
mm_163691.1	chr13	99429514	99429714	+	1	NA	NA	NA	-16788	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.045000	0.547264	
mm_60724.1	chr7	45339883	45340083	+	1	NA	NA	NA	4714	NM_010473	15464	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.045000	0.567164	
mm_88310.1	chr10	75409937	75410137	+	1	NA	NA	NA	3126	NM_133995	103149	Mm.441195	NM_133995	ENSMUSG00000033427	Upb1	AI195023	ureidopropionase, beta	protein-coding	0.010000	0.492537	
mm_44062.1	chr5	148398789	148398989	+	1	NA	NA	NA	1015	NM_007513	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.005000	0.462687	
mm_52911.1	chr6	122824541	122824741	+	1	NA	NA	NA	4457	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.025000	0.562189	
mm_170222.1	chr17	7952320	7952520	-	1	NA	NA	NA	6806	NM_025789	66832	Mm.29830	NM_025789	ENSMUSG00000073471	Rsph3a	1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a	radial spoke 3A homolog (Chlamydomonas)	protein-coding	0.025000	0.383085	
mm_130552.1	chr15	98989770	98989970	-	1	NA	NA	NA	3905	NR_045991	75951	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.020000	0.557214	
mm_94478.1	chr11	6561016	6561216	+	1	NA	NA	NA	933	NM_001190344	216527	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0.010000	0.472637	-34(TTTTTTAGAGGG,+,0.00)
mm_38959.1	chr4	150687032	150687232	-	1	NA	NA	NA	-34958	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.000000	0.412935	
mm_20152.1	chr2	121551301	121551501	-	1	NA	NA	NA	44678	NM_001290986	241627	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	0.010000	0.557214	-86(TGCTTTTTATGG,-,0.00),-84(CTTTTTATGGAT,+,0.00),-47(CCCCTGATAAGG,-,0.00)
mm_49384.1	chr6	24748241	24748441	+	1	NA	NA	NA	-26	NM_029848	77042	Mm.66017	NM_029848	ENSMUSG00000029680	Hyal4	4632428M18Rik|CSHY	hyaluronoglucosaminidase 4	protein-coding	0.010000	0.432836	
mm_35356.1	chr4	32335543	32335743	-	1	NA	NA	NA	-81792	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.015000	0.497512	
mm_58867.1	chr7	16945631	16945831	+	1	NA	NA	NA	1049	NM_001099636	434128	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	0.045000	0.597015	
mm_112683.1	chr13	16029094	16029294	+	1	NA	NA	NA	17343	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.000000	0.328358	
mm_154578.1	chrX	7571099	7571299	+	1	NA	NA	NA	-2401	NR_029473	78185	Mm.160055	NR_029473	ENSMUSG00000039545	Ppp1r3fos	4930524L23Rik	protein phosphatase 1, regulatory subunit 3F, opposite strand	ncRNA	0.020000	0.477612	
mm_10674.1	chr2	21367436	21367636	+	1	NA	NA	NA	-31	NM_001004761	241263	Mm.166647	NM_175706	ENSMUSG00000045967	Gpr158	5330427M13Rik|mKIAA1136	G protein-coupled receptor 158	protein-coding	0.045000	0.572139	
mm_101734.1	chr11	43310965	43311165	-	1	NA	NA	NA	63396	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.000000	0.467662	-32(GCTTTAAAACAA,+,0.00)
mm_98742.1	chr11	96463946	96464146	+	1	NA	NA	NA	501	NR_033524	100038600	Mm.483549	NR_033524		Gm11529	OTTMUSG00000001775	predicted gene 11529	ncRNA	0.020000	0.522388	
mm_109177.1	chr12	108422784	108422984	+	1	NA	NA	NA	68	NM_001043335	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.055000	0.666667	
mm_146723.1	chr18	15064250	15064450	-	1	NA	NA	NA	-768	NM_001142731	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.070000	0.621891	
mm_120411.1	chr14	65227603	65227803	+	1	NA	NA	NA	34760	NM_021458	14365	Mm.214687	NM_021458	ENSMUSG00000007989	Fzd3	AU020229|D930050A07Rik|Fz3	frizzled class receptor 3	protein-coding	0.005000	0.388060	
mm_72912.1	chr8	90955353	90955553	+	1	NA	NA	NA	23204	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.035000	0.547264	
mm_132550.1	chr16	37883514	37883714	+	1	NA	NA	NA	15214	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.025000	0.497512	
mm_10760.1	chr2	24153085	24153285	+	1	NA	NA	NA	13	NM_027163	69677	Mm.45901	NM_027163	ENSMUSG00000026985	Il1f8	2310043N20Rik|Il36b	interleukin 1 family, member 8	protein-coding	0.005000	0.467662	
mm_88177.1	chr10	69925393	69925593	+	1	NA	NA	NA	-39	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.020000	0.562189	
mm_59933.1	chr7	30423535	30423735	+	1	NA	NA	NA	331	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.000000	0.502488	
mm_154444.1	chrM	1403	1603	-	1	NA	NA	NA	NA	NA									0.010000	0.313433	-70(CACTATTAAAGG,-,0.00)
mm_170991.1	chr2	75191485	75191685	-	1	NA	NA	NA	252594	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA	0.030000	0.522388	
mm_39954.1	chr5	32133711	32133911	+	1	NA	NA	NA	-2661	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.055000	0.641791	
mm_65634.1	chr7	27572074	27572274	-	1	NA	NA	NA	11698	NM_001122767	66367	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	0.020000	0.527363	
mm_18901.1	chr2	76717968	76718168	-	1	NA	NA	NA	42753	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.025000	0.452736	
mm_160145.1	chr7	38528075	38528275	-	1	NA	NA	NA	18	NM_001013810	434171	Mm.60990	NM_001013810	ENSMUSG00000060565	Gm5591	EG434171	predicted gene 5591	protein-coding	0.010000	0.467662	
mm_170855.1	chr2	180225794	180225994	-	1	NA	NA	NA	-35	NM_001081171	16776	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0.085000	0.731343	
mm_1259.1	chr1	63114953	63115153	+	1	NA	NA	NA	313	NR_045914	100380944	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602|OTTMUSG00000002611	INO80 complex subunit D, opposite strand	ncRNA	0.010000	0.358209	
mm_45149.1	chr5	49285502	49285702	-	1	NA	NA	NA	57	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.025000	0.532338	
mm_32544.1	chr4	109342955	109343155	+	1	NA	NA	NA	-1	NM_001159964	13858	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0.005000	0.338308	
mm_115458.1	chr13	119428305	119428505	+	1	NA	NA	NA	-195	NM_001079849	218693	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0.105000	0.686567	
mm_88279.1	chr10	75060793	75060993	+	1	NA	NA	NA	-3	NM_001081412	110279	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.165000	0.830846	
mm_43166.1	chr5	127241728	127241928	+	1	NA	NA	NA	2	NM_175432	208213	Mm.444235	NM_175432	ENSMUSG00000034324	Tmem132c	2810482M11Rik|3230401P16|4632425D07Rik	transmembrane protein 132C	protein-coding	0.125000	0.751244	
mm_15970.1	chr2	166072448	166072648	+	1	NA	NA	NA	79911	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.000000	0.283582	-87(TGGTATAAAAGT,-,0.00),-62(GCTTTTATGATG,+,0.00)
mm_136538.1	chr16	97763361	97763561	-	1	NA	NA	NA	294	NM_023663	72388	Mm.35290	NM_023663	ENSMUSG00000005251	Ripk4	2310069J12Rik|AI552420|ANKK2|Ankrd3|DIk|PKK|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding	0.100000	0.691542	
mm_10646.1	chr2	20574617	20574817	+	1	NA	NA	NA	55204	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.005000	0.313433	
mm_122770.1	chr14	54397945	54398145	-	1	NA	NA	NA	11427	NM_001253680	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.015000	0.572139	
mm_147015.1	chr18	34578674	34578874	-	1	NA	NA	NA	332	NM_080637	75533	Mm.275430	NM_080637	ENSMUSG00000035984	Nme5	1700019D05Rik|Nm23-M5	NME/NM23 family member 5	protein-coding	0.035000	0.417910	
mm_85467.1	chr9	105521251	105521451	-	1	NA	NA	NA	-94	NM_001253831	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.025000	0.522388	
mm_4865.1	chr1	187662398	187662598	+	1	NA	NA	NA	53492	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.020000	0.517413	
mm_112946.1	chr13	21002615	21002815	+	1	NA	NA	NA	70584	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.005000	0.462687	
mm_73087.1	chr8	94524777	94524977	+	1	NA	NA	NA	-8151	NM_153507	234577	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0.000000	0.567164	
mm_16415.1	chr2	180119254	180119454	+	1	NA	NA	NA	-12	NM_144500	228983	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2|mKIAA0772	oxysterol binding protein-like 2	protein-coding	0.170000	0.791045	
mm_143942.1	chr17	86403871	86404071	-	1	NA	NA	NA	-116793	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.025000	0.527363	
mm_16996.1	chr2	18348868	18349068	-	1	NA	NA	NA	43862	NM_001190817	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.005000	0.388060	-46(TCCTTTATAGCT,+,0.00)
mm_70298.1	chr8	4087122	4087322	+	1	NA	NA	NA	18542	NM_026956	69142	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	0.035000	0.492537	
mm_157156.1	chrX	9463404	9463604	-	1	NA	NA	NA	5820	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.402985	
mm_60920.1	chr7	46841428	46841628	+	1	NA	NA	NA	-4276	NM_010699	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.020000	0.542289	
mm_58066.1	chr6	136922060	136922260	-	1	NA	NA	NA	20	NM_026983	69187	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding	0.010000	0.517413	
mm_44443.1	chr5	21645524	21645724	-	1	NA	NA	NA	-19	NM_177076	320118	Mm.442295	NM_177076	ENSMUSG00000048520	Fbxl13	4921539K22Rik	F-box and leucine-rich repeat protein 13	protein-coding	0.060000	0.577114	
mm_92471.1	chr10	78038211	78038411	-	1	NA	NA	NA	-3976	NM_001081695	54427	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.020000	0.517413	
mm_77121.1	chr8	111300098	111300298	-	1	NA	NA	NA	24	NM_146218	234736	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	0.110000	0.721393	
mm_124230.1	chr14	101198969	101199169	-	1	NA	NA	NA	1000	NM_029680	76627	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	0.005000	0.547264	
mm_142375.1	chr17	44724126	44724326	-	1	NA	NA	NA	11950	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.005000	0.343284	
mm_22368.1	chr2	181135162	181135362	-	1	NA	NA	NA	27	NM_001006668	16536	Mm.40615	NM_010611	ENSMUSG00000016346	Kcnq2	HNSPC|KQT2|Nmf134	potassium voltage-gated channel, subfamily Q, member 2	protein-coding	0.150000	0.786070	
mm_90620.1	chr10	128413116	128413316	+	1	NA	NA	NA	1600	NM_026259	67588	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	0.005000	0.427861	
mm_26488.1	chr3	145118493	145118693	+	1	NA	NA	NA	4	NM_001162538	52184	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	0.110000	0.651741	
mm_2522.1	chr1	106518024	106518224	+	1	NA	NA	NA	28507	NR_106164	102466254		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.010000	0.542289	
mm_33886.1	chr4	136178124	136178324	+	1	NA	NA	NA	-2558	NM_001305399	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.020000	0.601990	
mm_80570.1	chr9	83938365	83938565	+	1	NA	NA	NA	-10316	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.030000	0.407960	
mm_46732.1	chr5	110780443	110780643	-	1	NA	NA	NA	53	NM_019700	56361	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	0.115000	0.696517	
mm_112539.1	chr13	9685018	9685218	+	1	NA	NA	NA	78692	NM_001347471	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.015000	0.338308	
mm_131664.1	chr16	20629768	20629968	+	1	NA	NA	NA	17	NM_139293	107522	Mm.263319	NM_025462	ENSMUSG00000022842	Ece2	1810009K13Rik|6330509A19Rik|9630025D12Rik|BB127715|Ece-2	endothelin converting enzyme 2	protein-coding	0.120000	0.771144	
mm_80747.1	chr9	95028505	95028705	+	1	NA	NA	NA	276776	NR_106116	102465763		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.000000	0.373134	
mm_52039.1	chr6	96282319	96282519	+	1	NA	NA	NA	-116214	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo	0.005000	0.288557	
mm_281.1	chr1	21262725	21262925	+	1	NA	NA	NA	22240	NM_010356	14859	Mm.394593	NM_010356	ENSMUSG00000025934	Gsta3	Gst2-3	glutathione S-transferase, alpha 3	protein-coding	0.015000	0.507463	
mm_18396.1	chr2	60210427	60210627	-	1	NA	NA	NA	591	NM_020575	57438	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.045000	0.507463	
mm_50538.1	chr6	49046016	49046216	+	1	NA	NA	NA	9598	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.000000	0.338308	-14(AACCATAAAAGG,-,0.00)
mm_1999.1	chr1	87126878	87127078	+	1	NA	NA	NA	1970	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.040000	0.587065	
mm_21765.1	chr2	164844368	164844568	-	1	NA	NA	NA	10695	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.030000	0.542289	
mm_20400.1	chr2	129199136	129199336	-	1	NA	NA	NA	463	NM_001159593	20515	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.130000	0.721393	
mm_146920.1	chr18	31610411	31610611	-	1	NA	NA	NA	-609	NM_026165	67453	Mm.23896	NM_026165	ENSMUSG00000024259	Slc25a46	1200007B05Rik|AI325987	solute carrier family 25, member 46	protein-coding	0.020000	0.447761	-95(CCCTTTAAACGA,+,0.00)
mm_125273.1	chr15	36179213	36179413	+	1	NA	NA	NA	-217	NM_012031	26942	Mm.295539	NM_012031	ENSMUSG00000037617	Spag1	tpis	sperm associated antigen 1	protein-coding	0.070000	0.671642	
mm_153038.1	chr19	32061238	32061438	-	1	NA	NA	NA	41802	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.000000	0.393035	
mm_42274.1	chr5	114146488	114146688	+	1	NA	NA	NA	15432	NM_011677	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.005000	0.542289	
mm_107617.1	chr12	51347930	51348130	+	1	NA	NA	NA	-200	NM_001167964	217558	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding	0.075000	0.601990	
mm_120865.1	chr14	75229534	75229734	+	1	NA	NA	NA	-12653	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.005000	0.402985	
mm_44751.1	chr5	31290919	31291119	-	1	NA	NA	NA	95	NM_026298	67661	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	0.070000	0.582090	
mm_111257.1	chr12	85096986	85097186	-	1	NA	NA	NA	9345	NM_175198	73422	Mm.311944	NM_175198	ENSMUSG00000042320	Prox2	1700058C01Rik	prospero homeobox 2	protein-coding	0.005000	0.492537	
mm_166756.1	chr6	127474084	127474284	+	1	NA	NA	NA	20461	NM_181402	101187	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.015000	0.467662	
mm_10172.1	chr2	4559685	4559885	+	1	NA	NA	NA	31	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.055000	0.616915	
mm_15177.1	chr2	154190654	154190854	+	1	NA	NA	NA	-64	NM_001012392	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.015000	0.562189	
mm_19746.1	chr2	104816889	104817089	-	1	NA	NA	NA	-293	NM_001123327	99003	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	0.155000	0.791045	
mm_11932.1	chr2	52424913	52425113	+	1	NA	NA	NA	-139	NM_182994	75423	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.095000	0.676617	
mm_29609.1	chr3	121263066	121263266	-	1	NA	NA	NA	150	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0.085000	0.636816	
mm_144230.1	chr18	10325085	10325285	+	1	NA	NA	NA	6	NM_001083628	381157	Mm.261535	NM_001083628	ENSMUSG00000042942	Greb1l	mKIAA4095	growth regulation by estrogen in breast cancer-like	protein-coding	0.120000	0.781095	
mm_138593.1	chr17	35509343	35509543	+	1	NA	NA	NA	636	NM_001252452	18999	Mm.17031	NM_013633	ENSMUSG00000024406	Pou5f1	NF-A3|Oct-3|Oct-3/4|Oct-4|Oct3|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4	POU domain, class 5, transcription factor 1	protein-coding	0.025000	0.567164	
mm_119606.1	chr14	51096298	51096498	+	1	NA	NA	NA	398	NM_201239	58809	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	0.025000	0.527363	
mm_125719.1	chr15	72971986	72972186	+	1	NA	NA	NA	83726	NM_029640	76510	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.010000	0.517413	
mm_83018.1	chr9	36797188	36797388	-	1	NA	NA	NA	105	NM_001199494	13663	Mm.4337	NM_007915	ENSMUSG00000062762	Ei24	AA536736|AI115355|PIG8	etoposide induced 2.4 mRNA	protein-coding	0.140000	0.805970	
mm_116021.1	chr13	24831364	24831564	-	1	NA	NA	NA	25	NM_025790	66834	Mm.2125	NM_025790	ENSMUSG00000006717	Acot13	0610006O17Rik|Them2	acyl-CoA thioesterase 13	protein-coding	0.090000	0.676617	
mm_108889.1	chr12	100003595	100003795	+	1	NA	NA	NA	39196	NM_001164427	217826	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.020000	0.442786	
mm_51240.1	chr6	71543881	71544081	+	1	NA	NA	NA	127	NM_025783	66700	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	0.055000	0.631841	
mm_40292.1	chr5	43251606	43251806	+	1	NA	NA	NA	-16352	NR_028417	665934	Mm.381491	NR_028417	ENSMUSG00000085720	Gm7854	EG665934|ENSMUSG00000054483	predicted gene 7854	ncRNA	0.010000	0.497512	
mm_118947.1	chr14	27344487	27344687	+	1	NA	NA	NA	8550	NM_001289687	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.015000	0.383085	
mm_104156.1	chr11	87212332	87212532	-	1	NA	NA	NA	85357	NM_197987	68729	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.015000	0.457711	
mm_83570.1	chr9	46328849	46329049	-	1	NA	NA	NA	-8963	NM_183104	74361	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding	0.070000	0.606965	
mm_75857.1	chr8	70699979	70700179	-	1	NA	NA	NA	2340	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.105000	0.711443	
mm_151885.1	chr19	5798527	5798727	-	1	NA	NA	NA	-2646	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.010000	0.388060	-51(GCCTCTTAAAAA,-,0.00)
mm_75867.1	chr8	70762868	70763068	-	1	NA	NA	NA	-2047	NM_183170	234384	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0.020000	0.522388	
mm_72961.1	chr8	92827337	92827537	+	1	NA	NA	NA	140	NM_008610	17390	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	0.040000	0.587065	
mm_170754.1	chr2	156809187	156809387	+	1	NA	NA	NA	-30720	NM_001291124	228839	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0.000000	0.502488	-31(GCTTTAAGACCC,+,0.00)
mm_51416.1	chr6	78381912	78382112	+	1	NA	NA	NA	1303	NM_011259	19694	Mm.2552	NM_011259	ENSMUSG00000079516	Reg3a	AV063448	regenerating islet-derived 3 alpha	protein-coding	0.010000	0.517413	
mm_154690.1	chrX	8046492	8046692	+	1	NA	NA	NA	27721	NM_001290716	20937	Mm.9244	NM_011514	ENSMUSG00000039231	Suv39h1	AI852103|AL022883|DXHXS7466e|H3-K9-HMTase 1|KMT1A|mIS6	suppressor of variegation 3-9 homolog 1 (Drosophila)	protein-coding	0.020000	0.507463	
mm_131912.1	chr16	23307615	23307815	+	1	NA	NA	NA	17245	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.005000	0.507463	
mm_165948.1	chr4	83464961	83465161	+	1	NA	NA	NA	21387	NM_001290527	101739	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	0.005000	0.358209	
mm_167979.1	chrX	160792380	160792580	+	1	NA	NA	NA	24467	NM_011302	20147	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	0.005000	0.333333	-22(GCCTAAATGGGC,+,0.00),-13(GGCCTTTAAAAG,-,0.00),-12(GCCTTTAAAAGA,-,0.00),-11(CCTTTAAAAGAT,+,0.00)
mm_60614.1	chr7	44591129	44591329	+	1	NA	NA	NA	343	NM_001290682	16504	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.160000	0.701493	
mm_144434.1	chr18	21072240	21072440	+	1	NA	NA	NA	-4	NM_008586	17288	Mm.2682	NM_008586	ENSMUSG00000024313	Mep1b	Mep-1b	meprin 1 beta	protein-coding	0.010000	0.422886	-28(CTTTTAAAAGTC,+,0.00)
mm_35467.1	chr4	40805142	40805342	-	1	NA	NA	NA	44896	NR_039584	100628614		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.010000	0.412935	26(TGCCTTAAAAGA,-,0.00)
mm_56789.1	chr6	116641639	116641839	-	1	NA	NA	NA	4308	NR_106010	102466793		NR_106010	ENSMUSG00000098334	Mir7043	Gm27776|mmu-mir-7043	microRNA 7043	ncRNA	0.015000	0.517413	
mm_131547.1	chr16	17893495	17893695	+	1	NA	NA	NA	-608	NM_009435	22114	Mm.439725	NM_009435	ENSMUSG00000041566	Tssk1	Stk22a|TSK-1|Tsk1|Tssk|Tssk1b	testis-specific serine kinase 1	protein-coding	0.010000	0.487562	
mm_2701.1	chr1	127868696	127868896	+	1	NA	NA	NA	23	NM_178690	226407	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0.090000	0.696517	
mm_28910.1	chr3	98741760	98741960	-	1	NA	NA	NA	-17317	NM_153193	15493	Mm.482364	NM_153193	ENSMUSG00000063730	Hsd3b2	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2	protein-coding	0.005000	0.487562	
mm_20763.1	chr2	140955965	140956165	-	1	NA	NA	NA	-284589	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.015000	0.462687	
mm_121494.1	chr14	121878470	121878670	+	1	NA	NA	NA	-36	NM_026861	68889	Mm.441151	NM_026861	ENSMUSG00000041765	Ubac2	1190008A14Rik|AW554959|Phgdhl1	ubiquitin associated domain containing 2	protein-coding	0.120000	0.706468	
mm_95970.1	chr11	58926094	58926294	+	1	NA	NA	NA	8137	NM_138678	192194	Mm.22540	NM_138678	ENSMUSG00000020490	Btnl10	BUTR-1|Butr1	butyrophilin-like 10	protein-coding	0.000000	0.427861	
mm_88872.1	chr10	81069992	81070192	+	1	NA	NA	NA	9	NM_022653	50492	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	0.115000	0.671642	
mm_113326.1	chr13	30786471	30786671	+	1	NA	NA	NA	37338	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.015000	0.517413	
mm_138238.1	chr17	34434863	34435063	+	1	NA	NA	NA	36143	NM_001163855	407788	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	0.000000	0.457711	
mm_64004.1	chr7	140173262	140173462	+	1	NA	NA	NA	-2742	NM_146518	258511	Mm.334306	NM_146518	ENSMUSG00000051051	Olfr523	MOR104-4	olfactory receptor 523	protein-coding	0.010000	0.597015	
mm_169094.1	chr13	40886735	40886935	+	1	NA	NA	NA	77	NM_008105	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.015000	0.517413	13(TCTTTTAGATCC,+,0.00)
mm_96696.1	chr11	69621973	69622173	+	1	NA	NA	NA	-36	NM_026991	69215	Mm.340410	NM_026991	ENSMUSG00000069835	Sat2	2610016A03Rik|SSAT-2|SSAT2	spermidine/spermine N1-acetyl transferase 2	protein-coding	0.030000	0.597015	-10(CCTTTTCTGGCA,+,0.00)
mm_165805.1	chr3	144653830	144654030	+	1	NA	NA	NA	66405	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.005000	0.472637	
mm_47981.1	chr5	135911357	135911557	-	1	NA	NA	NA	23184	NM_018871	22628	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.065000	0.567164	
mm_158331.1	chrX	133961661	133961861	-	1	NA	NA	NA	20051	NM_001290718	27359	Mm.38674	NM_013757	ENSMUSG00000031255	Sytl4	Gph|Slp4	synaptotagmin-like 4	protein-coding	0.030000	0.552239	
mm_35810.1	chr4	46662544	46662744	-	1	NA	NA	NA	-12445	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	0.015000	0.427861	79(TCTTTTATATGC,+,0.00)
mm_167784.1	chr9	120004748	120004948	+	1	NA	NA	NA	18750	NM_011724	22437	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.010000	0.487562	
mm_11414.1	chr2	31616497	31616697	+	1	NA	NA	NA	4176	NR_105964	102466214		NR_105964	ENSMUSG00000098904	Mir6998	Gm28024|mmu-mir-6998	microRNA 6998	ncRNA	0.005000	0.283582	
mm_96798.1	chr11	69981071	69981271	+	1	NA	NA	NA	3	NM_026017	67181	Mm.41678	NM_026017	ENSMUSG00000018559	Ctdnep1	2610507E10Rik|Dullard	CTD nuclear envelope phosphatase 1	protein-coding	0.050000	0.676617	
mm_69964.1	chr7	142376542	142376742	-	1	NA	NA	NA	-2896	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.025000	0.527363	
mm_159648.1	chr4	145121475	145121675	-	1	NA	NA	NA	69091	NM_001276502	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.005000	0.477612	
mm_159079.1	chr2	26319675	26319875	+	1	NA	NA	NA	5	NM_001199147	67839	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	0.025000	0.587065	
mm_172384.1	chr7	131482704	131482904	+	1	NA	NA	NA	-60159	NM_008257	15373	Mm.323562	NM_008257	ENSMUSG00000040148	Hmx3	Nkx-5.1|Nkx5-1|Nkx5.1	H6 homeobox 3	protein-coding	0.015000	0.412935	
mm_168607.1	chr11	75422483	75422683	-	1	NA	NA	NA	40	NM_011340	20317	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.015000	0.522388	
mm_67682.1	chr7	89338575	89338775	-	1	NA	NA	NA	112	NM_028343	72759	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.135000	0.726368	
mm_135671.1	chr16	52411635	52411835	-	1	NA	NA	NA	41346	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.378109	
mm_119914.1	chr14	54953210	54953410	+	1	NA	NA	NA	-4168	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.030000	0.532338	
mm_71930.1	chr8	70278007	70278207	+	1	NA	NA	NA	-4892	NM_011984	26558	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	0.020000	0.587065	
mm_164860.1	chr18	53471036	53471236	+	1	NA	NA	NA	6590	NM_001033281	225518	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	0.020000	0.338308	
mm_153325.1	chr19	38124007	38124207	-	1	NA	NA	NA	704	NM_011255	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.005000	0.512438	
mm_167023.1	chr7	65861758	65861958	+	1	NA	NA	NA	-278	NM_001291184	18553	Mm.294007	NM_011048	ENSMUSG00000030513	Pcsk6	C86343|Pace4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding	0.085000	0.676617	
mm_149245.1	chr19	10204144	10204344	+	1	NA	NA	NA	42	NM_026919	69038	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	0.065000	0.587065	
mm_166970.1	chr7	44572464	44572664	+	1	NA	NA	NA	119	NM_008437	16541	Mm.383181	NM_008437	ENSMUSG00000002204	Napsa	KAP|Kdap|NAP1|SNAPA|pronapsin	napsin A aspartic peptidase	protein-coding	0.015000	0.557214	
mm_70037.1	chr7	142577320	142577520	-	1	NA	NA	NA	-273	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.015000	0.552239	
mm_65324.1	chr7	24971936	24972136	-	1	NA	NA	NA	692	NM_010261	14470	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.060000	0.621891	
mm_162309.1	chr1	37153724	37153924	+	1	NA	NA	NA	-64454	NM_001282010	12790	Mm.214224	NM_009918	ENSMUSG00000026114	Cnga3	CNG3	cyclic nucleotide gated channel alpha 3	protein-coding	0.020000	0.512438	
mm_161208.1	chr13	59809449	59809649	-	1	NA	NA	NA	13598	NM_153538	214290	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.025000	0.427861	
mm_126003.1	chr15	76526351	76526551	+	1	NA	NA	NA	-4322	NM_130893	170729	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.005000	0.318408	-87(GTCTATAAAAAA,-,0.00)
mm_23721.1	chr3	69009389	69009589	+	1	NA	NA	NA	-283	NR_029529	387175		NR_029529	ENSMUSG00000065580	Mir15b	Mirn15b|mir-15b|mmu-mir-15b	microRNA 15b	ncRNA	0.020000	0.378109	
mm_11470.1	chr2	32363127	32363327	+	1	NA	NA	NA	29	NM_028412	68379	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	0.070000	0.626866	
mm_149816.1	chr19	23904511	23904711	+	1	NA	NA	NA	126408	NM_001114174	381217	Mm.426078	NM_001114174	ENSMUSG00000071604	Fam189a2	AI414343|AI666772|Gm967	family with sequence similarity 189, member A2	protein-coding	0.025000	0.542289	
mm_167063.1	chr7	95383961	95384161	+	1	NA	NA	NA	-787183	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.010000	0.398010	
mm_128263.1	chr15	36771450	36771650	-	1	NA	NA	NA	19382	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.005000	0.417910	65(ACTTTTATGGGG,+,0.00)
mm_139000.1	chr17	45560906	45561106	+	1	NA	NA	NA	-3146	NM_028662	73836	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.010000	0.502488	
mm_4800.1	chr1	185205833	185206033	+	1	NA	NA	NA	1765	NM_001163754	98732	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	0.000000	0.373134	
mm_129346.1	chr15	77874854	77875054	-	1	NA	NA	NA	-32779	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.015000	0.542289	
mm_165922.1	chr4	62088156	62088356	+	1	NA	NA	NA	-944	NM_001039544	17842	Mm.250267	NM_010845	ENSMUSG00000066154	Mup3	MUP15|MUPIII|Mup-3|Mup25	major urinary protein 3	protein-coding	0.005000	0.318408	
mm_140274.1	chr17	84893714	84893914	+	1	NA	NA	NA	-62927	NM_001159497	19043	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.035000	0.522388	-38(TGGCATAAAAAG,-,0.00)
mm_62078.1	chr7	92875202	92875402	+	1	NA	NA	NA	49	NM_028243	72461	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.055000	0.631841	
mm_123641.1	chr14	68606373	68606573	-	1	NA	NA	NA	-24401	NM_021475	58860	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0.010000	0.363184	
mm_23920.1	chr3	83055480	83055680	+	1	NA	NA	NA	42	NM_016784	53317	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	0.105000	0.606965	
mm_57264.1	chr6	123286163	123286363	-	1	NA	NA	NA	3608	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.010000	0.417910	
mm_39333.1	chr5	8728107	8728307	+	1	NA	NA	NA	68115	NM_011076	18671	Mm.207354	NM_011076	ENSMUSG00000040584	Abcb1a	Abcb4|Evi32|Mdr1a|Mdr3|P-gp|Pgp|Pgy-3|Pgy3|mdr-3	ATP-binding cassette, sub-family B (MDR/TAP), member 1A	protein-coding	0.005000	0.343284	
mm_81990.1	chr9	121460135	121460335	+	1	NA	NA	NA	35459	NM_001284508	12424	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.005000	0.557214	
mm_22805.1	chr3	27014314	27014514	+	1	NA	NA	NA	139440	NM_007900	13605	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536|mKIAA4037	ect2 oncogene	protein-coding	0.000000	0.283582	
mm_24254.1	chr3	89183305	89183505	+	1	NA	NA	NA	180	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.055000	0.587065	
mm_59343.1	chr7	25601190	25601390	+	1	NA	NA	NA	14602	NM_001039243	632778	Mm.423112	NM_001039243	ENSMUSG00000074261	Erich4	EG632778|Gm7092|Kseg1	glutamate rich 4	protein-coding	0.025000	0.452736	
mm_103104.1	chr11	69948080	69948280	-	1	NA	NA	NA	10	NM_009204	20528	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	Glut-4|Glut4	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	0.055000	0.636816	
mm_39689.1	chr5	26904550	26904750	+	1	NA	NA	NA	-128	NM_001198886	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.035000	0.572139	
mm_154121.1	chr19	57197348	57197548	-	1	NA	NA	NA	183	NM_001103177	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.105000	0.696517	
mm_100628.1	chr11	121702504	121702704	+	1	NA	NA	NA	177	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.130000	0.736318	
mm_94772.1	chr11	21242552	21242752	+	1	NA	NA	NA	3620	NM_001290628	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.005000	0.407960	
mm_95567.1	chr11	52396293	52396493	+	1	NA	NA	NA	-35	NM_153117	213673	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.095000	0.557214	-76(CCTTTTCTACAC,+,0.00)
mm_164458.1	chr16	56839436	56839636	-	1	NA	NA	NA	-43678	NM_172825	239853	Mm.258979	NM_172825	ENSMUSG00000022755	Adgrg7	9130020O16Rik|Gpr128	adhesion G protein-coupled receptor G7	protein-coding	0.005000	0.447761	
mm_161980.1	chr19	21680406	21680606	+	1	NA	NA	NA	27197	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.005000	0.442786	
mm_128660.1	chr15	60122311	60122511	-	1	NA	NA	NA	-105793	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.000000	0.348259	
mm_1668.1	chr1	74771916	74772116	+	1	NA	NA	NA	124	NM_009526	22420	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	0.135000	0.796020	
mm_160604.1	chr9	78289861	78290061	+	1	NA	NA	NA	33	NM_001122660	100042314	Mm.482247	NM_001122660	ENSMUSG00000074179	Gm10639	ENSMUSG00000074179	predicted gene 10639	protein-coding	0.005000	0.512438	
mm_161876.1	chr18	37264744	37264944	+	1	NA	NA	NA	-154	NM_053126	93872	Mm.196703	NM_053126	ENSMUSG00000051663	Pcdhb1	PcdhbA	protocadherin beta 1	protein-coding	0.025000	0.467662	
mm_16706.1	chr2	7081187	7081387	-	1	NA	NA	NA	15	NM_001110230	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.040000	0.621891	
mm_29051.1	chr3	103735648	103735848	-	1	NA	NA	NA	2253	NM_133859	99543	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	0.005000	0.437811	3(GCTCATATACCC,+,0.00)
mm_27108.1	chr3	30699684	30699884	-	1	NA	NA	NA	59	NM_001309233	320352	Mm.229153	NM_001309233	ENSMUSG00000074653	Lrrc31	E230002P03Rik	leucine rich repeat containing 31	protein-coding	0.015000	0.492537	
mm_106158.1	chr11	116624205	116624405	-	1	NA	NA	NA	-53	NM_001167680	217344	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.100000	0.736318	
mm_111878.1	chr12	108003667	108003867	-	1	NA	NA	NA	-353	NM_021399	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.050000	0.572139	
mm_114441.1	chr13	66203642	66203842	+	1	NA	NA	NA	90289	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.010000	0.522388	
mm_82306.1	chr9	7871734	7871934	-	1	NA	NA	NA	1336	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.010000	0.482587	
mm_156590.1	chrX	152180396	152180596	+	1	NA	NA	NA	1487	NM_001005475	245666	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	0.010000	0.527363	
mm_128531.1	chr15	54847311	54847511	-	1	NA	NA	NA	72735	NM_015744	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.010000	0.462687	
mm_126517.1	chr15	81858315	81858515	+	1	NA	NA	NA	-89	NM_020507	57259	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.060000	0.616915	
mm_32772.1	chr4	116695933	116696133	+	1	NA	NA	NA	-10011	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.005000	0.467662	
mm_94212.1	chr11	3131004	3131204	+	1	NA	NA	NA	7083	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.010000	0.562189	-2(GACCTTATAAGA,-,0.00),0(CCTTATAAGACC,+,0.00)
mm_115322.1	chr13	112427677	112427877	+	1	NA	NA	NA	-36293	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.025000	0.507463	
mm_159119.1	chr2	66440831	66441031	-	1	NA	NA	NA	51	NR_033495	100038743	Mm.330264	NR_033495		Gm13629	OTTMUSG00000013098	predicted gene 13629	ncRNA	0.020000	0.457711	
mm_75117.1	chr8	34622873	34623073	-	1	NA	NA	NA	17343	NR_040706	330734	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	0.025000	0.462687	-38(GGGTATAAATAG,-,0.00)
mm_169827.1	chr16	24529216	24529416	+	1	NA	NA	NA	2	NR_038091	624582	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.035000	0.547264	
mm_82137.1	chr9	123761343	123761543	+	1	NA	NA	NA	-5768	NM_009913	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.020000	0.452736	-33(CTTTATAAAAGC,+,0.00),-33(CTTTATAAAAGC,-,0.00)
mm_64155.1	chr7	141338845	141339045	+	1	NA	NA	NA	-57	NM_133191	98845	Mm.27451	NM_133191	ENSMUSG00000025504	Eps8l2	AI042819|AW545405|Eps8r2	EPS8-like 2	protein-coding	0.070000	0.686567	
mm_104390.1	chr11	94486116	94486316	-	1	NA	NA	NA	-906	NM_144827	217116	Mm.156123	NM_144827	ENSMUSG00000020867	Spata20	Tisp78	spermatogenesis associated 20	protein-coding	0.075000	0.587065	
mm_122837.1	chr14	54723712	54723912	-	1	NA	NA	NA	-11638	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.005000	0.547264	
mm_137712.1	chr17	29099594	29099794	+	1	NA	NA	NA	5925	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.015000	0.472637	
mm_4784.1	chr1	184034332	184034532	+	1	NA	NA	NA	-29	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.070000	0.577114	
mm_119248.1	chr14	33923347	33923547	+	1	NA	NA	NA	-140	NM_145741	14560	Mm.432071	NM_145741	ENSMUSG00000021943	Gdf10	Bmp3b	growth differentiation factor 10	protein-coding	0.140000	0.786070	
mm_126648.1	chr15	84127210	84127410	+	1	NA	NA	NA	-4135	NM_029427	75772	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0.015000	0.592040	
mm_162618.1	chr1	183369708	183369908	+	1	NA	NA	NA	-243	NM_177389	338366	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	0.075000	0.577114	
mm_163292.1	chr11	118320021	118320221	+	1	NA	NA	NA	22413	NM_021440	58251	Mm.439815	NM_021440	ENSMUSG00000076433	BC100451	Cep295nl|Ddc8|FS39|Kiaa1731nl	cDNA sequence BC100451	protein-coding	0.010000	0.547264	
mm_9658.1	chr1	177795407	177795607	-	1	NA	NA	NA	1002	NM_007422	11566	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.020000	0.348259	
mm_59890.1	chr7	30306981	30307181	+	1	NA	NA	NA	-1672	NM_198027	233065	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	0.020000	0.507463	
mm_24192.1	chr3	88607414	88607614	+	1	NA	NA	NA	-8693	NM_001198911	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.040000	0.567164	
mm_99475.1	chr11	102556404	102556604	+	1	NA	NA	NA	-346	NM_001159492	237943	Mm.260282	NM_001159492	ENSMUSG00000034621	Gpatch8	5430405G24Rik|AU018890|ENSMUSG00000075516|Fbm1|Gpatc8|mKIAA0553	G patch domain containing 8	protein-coding	0.075000	0.542289	
mm_164623.1	chr17	31198809	31199009	-	1	NA	NA	NA	65	NM_001163776	140765	Mm.214638	NM_080727	ENSMUSG00000024034	Tmprss3	-	transmembrane protease, serine 3	protein-coding	0.040000	0.517413	
mm_114702.1	chr13	83524411	83524611	+	1	NA	NA	NA	-232	NM_001347567	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.055000	0.567164	
mm_91388.1	chr10	30655658	30655858	-	1	NA	NA	NA	109	NM_001111267	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.010000	0.502488	
mm_49323.1	chr6	18866269	18866469	+	1	NA	NA	NA	51	NM_001167757	75196	Mm.67665	NM_029202	ENSMUSG00000029517	Ankrd7	4930532L20Rik|AV278427	ankyrin repeat domain 7	protein-coding	0.020000	0.502488	
mm_121404.1	chr14	119268665	119268865	+	1	NA	NA	NA	130500	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.000000	0.452736	
mm_44807.1	chr5	33274888	33275088	-	1	NA	NA	NA	16	NM_001310535	13016	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	0.195000	0.805970	
mm_115725.1	chr13	16027232	16027432	-	1	NA	NA	NA	15481	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.000000	0.368159	
mm_71263.1	chr8	40918418	40918618	+	1	NA	NA	NA	-7715	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.020000	0.472637	
mm_62928.1	chr7	118600150	118600350	+	1	NA	NA	NA	2953	NM_001105252	74424	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	0.030000	0.527363	
mm_102894.1	chr11	69420241	69420441	-	1	NA	NA	NA	-6666	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.080000	0.691542	
mm_133868.1	chr16	96372480	96372680	+	1	NA	NA	NA	10816	NM_028078	72058	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.015000	0.467662	
mm_147897.1	chr18	65322046	65322246	-	1	NA	NA	NA	71742	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.025000	0.487562	
mm_148701.1	chr19	5747648	5747848	+	1	NA	NA	NA	6844	NM_008520	16998	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0.035000	0.616915	
mm_163363.1	chr12	32953621	32953821	-	1	NA	NA	NA	68	NR_044986	74076	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0.045000	0.532338	
mm_1888.1	chr1	85682197	85682397	+	1	NA	NA	NA	32309	NM_001313714	20684	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.015000	0.452736	
mm_65354.1	chr7	24998901	24999101	-	1	NA	NA	NA	6936	NM_001290469	232975	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.040000	0.597015	
mm_86799.1	chr10	20312282	20312482	+	1	NA	NA	NA	-87	NM_001025392	72567	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0.090000	0.686567	
mm_33721.1	chr4	134065584	134065784	+	1	NA	NA	NA	-2768	NM_001162970	230806	Mm.240080	NM_001162970	ENSMUSG00000012123	Aim1l	-	absent in melanoma 1-like	protein-coding	0.045000	0.646766	
mm_122872.1	chr14	54925562	54925762	-	1	NA	NA	NA	1126	NM_010112	13644	Mm.236438	NM_010112	ENSMUSG00000022203	Efs	-	embryonal Fyn-associated substrate	protein-coding	0.040000	0.597015	
mm_168507.1	chr11	55118615	55118815	-	1	NA	NA	NA	20730	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.030000	0.522388	
mm_151584.1	chr19	61224579	61224779	+	1	NA	NA	NA	3739	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.030000	0.542289	
mm_118552.1	chr14	17660860	17661060	+	1	NA	NA	NA	0	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.115000	0.726368	
mm_8495.1	chr1	153850986	153851186	-	1	NA	NA	NA	109	NM_178243	240817	Mm.439405	NM_178243	ENSMUSG00000045968	Teddm2	5830403L16Rik|AJ554213|Me9|e92	transmembrane epididymal family member 2	protein-coding	0.015000	0.502488	
mm_69191.1	chr7	127273957	127274157	-	1	NA	NA	NA	2	NM_009266	20768	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0.090000	0.597015	
mm_27290.1	chr3	41742250	41742450	-	1	NA	NA	NA	164	NM_001081411	67161	Mm.331001	NM_026008	ENSMUSG00000059834	Sclt1	2610207F23Rik|4931421F20Rik	sodium channel and clathrin linker 1	protein-coding	0.175000	0.786070	
mm_144586.1	chr18	31955018	31955218	+	1	NA	NA	NA	-5482	NM_001025381	574402	Mm.391108	NM_001025381	ENSMUSG00000052229	Gpr17	AI853548	G protein-coupled receptor 17	protein-coding	0.010000	0.572139	
mm_40250.1	chr5	38219865	38220065	+	1	NA	NA	NA	463	NM_029162	75079	Mm.258741	NM_029162	ENSMUSG00000029127	Zbtb49	4930518A03Rik|Zfp509|Znf509	zinc finger and BTB domain containing 49	protein-coding	0.045000	0.537313	
mm_94205.1	chr11	3104622	3104822	+	1	NA	NA	NA	-19299	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.025000	0.432836	
mm_76068.1	chr8	78508763	78508963	-	1	NA	NA	NA	65	NM_001252089	19656	Mm.24718	NM_009033	ENSMUSG00000037070	Rbmxl1	Hnrpg|Rbmx|Rbmxrt	RNA binding motif protein, X-linked like-1	protein-coding	0.155000	0.666667	
mm_134749.1	chr16	23127624	23127824	-	1	NA	NA	NA	6	NM_145480	106344	Mm.386835	NM_145480	ENSMUSG00000022881	Rfc4	A1|AI894123|AU040575|RFC37	replication factor C (activator 1) 4	protein-coding	0.110000	0.646766	
mm_106514.1	chr11	120531406	120531606	-	1	NA	NA	NA	779	NM_008101	14527	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.035000	0.547264	-50(CCCCTGAAAAGG,-,0.00)
mm_95497.1	chr11	51763616	51763816	+	1	NA	NA	NA	53	NM_025535	66397	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	0.085000	0.681592	
mm_97940.1	chr11	83662458	83662658	+	1	NA	NA	NA	-26	NM_013652	20303	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.020000	0.517413	-6(GTCCCTATAAAG,-,0.00),-4(CCCTATAAAGAG,+,0.00),-4(CCCTATAAAGAG,-,0.00)
mm_9193.1	chr1	171173993	171174193	-	1	NA	NA	NA	18575	NM_001315500	17528	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0.000000	0.507463	
mm_142080.1	chr17	35702236	35702436	-	1	NA	NA	NA	-292	NM_001198831	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.035000	0.621891	
mm_67810.1	chr7	98119392	98119592	-	1	NA	NA	NA	1	NM_001256081	17921	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.020000	0.616915	
mm_130307.1	chr15	97020251	97020451	-	1	NA	NA	NA	35605	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.010000	0.422886	-14(CAGCTTAAAAGA,-,0.00)
mm_172861.1	chr9	40803175	40803375	+	1	NA	NA	NA	2002	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.055000	0.567164	-9(CTCTCTATGAGG,-,0.00)
mm_133890.1	chr16	97356781	97356981	+	1	NA	NA	NA	153	NM_019517	56175	Mm.97885	NM_019517	ENSMUSG00000040605	Bace2	1110059C24Rik|AEPLC|AI850424|ALP56|ARP1|ASP1|ASP21|BAE2|CDA13|CEAP1|DRAP	beta-site APP-cleaving enzyme 2	protein-coding	0.115000	0.741294	
mm_14519.1	chr2	132599352	132599552	+	1	NA	NA	NA	1256	NR_033469	767814	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.020000	0.532338	
mm_126248.1	chr15	79028349	79028549	+	1	NA	NA	NA	237	NM_008197	14958	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	0.135000	0.751244	
mm_51782.1	chr6	88198566	88198766	+	1	NA	NA	NA	2	NM_008090	14461	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.135000	0.771144	
mm_23110.1	chr3	37481328	37481528	+	1	NA	NA	NA	61478	NM_021343	57815	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0.105000	0.686567	
mm_171753.1	chr5	104859893	104860093	-	1	NA	NA	NA	75	NM_001039231	626391	Mm.385405	NM_001039231	ENSMUSG00000072774	Zfp951	C230055K05Rik	zinc finger protein 951	protein-coding	0.030000	0.487562	
mm_21822.1	chr2	165287758	165287958	-	1	NA	NA	NA	-20	NR_045544	228875	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.075000	0.661692	
mm_47559.1	chr5	124399990	124400190	-	1	NA	NA	NA	25824	NM_001081203	243272	Mm.23879	NM_001081203	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch homolog 1 (Drosophila)	protein-coding	0.025000	0.472637	
mm_2798.1	chr1	130851514	130851714	+	1	NA	NA	NA	-14163	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.010000	0.442786	
mm_46412.1	chr5	104093242	104093442	-	1	NA	NA	NA	-15734	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.005000	0.402985	
mm_161047.1	chr12	40789761	40789961	+	1	NA	NA	NA	-234229	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.005000	0.417910	-92(GTCCCTAAAAGA,-,0.00)
mm_112634.1	chr13	16011735	16011935	+	1	NA	NA	NA	-16	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.030000	0.492537	
mm_114734.1	chr13	83729385	83729585	+	1	NA	NA	NA	1379	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.055000	0.601990	
mm_75937.1	chr8	71558877	71559077	-	1	NA	NA	NA	-106	NM_001100462	434325	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	0.045000	0.611940	
mm_90525.1	chr10	128083205	128083405	+	1	NA	NA	NA	-2	NM_016774	11947	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	-	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	0.090000	0.666667	
mm_59370.1	chr7	25697099	25697299	+	1	NA	NA	NA	10197	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.035000	0.597015	
mm_127534.1	chr15	102102980	102103180	+	1	NA	NA	NA	92	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.020000	0.666667	
mm_58563.1	chr7	4770937	4771137	+	1	NA	NA	NA	233	NM_172895	243822	Mm.333542	NM_172895	ENSMUSG00000092518	Fam71e2	4930401F20Rik	family with sequence similarity 71, member E2	protein-coding	0.055000	0.592040	
mm_8948.1	chr1	164438435	164438635	-	1	NA	NA	NA	19820	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.040000	0.457711	
mm_155079.1	chrX	47902684	47902884	+	1	NA	NA	NA	-9672	NM_177215	320634	Mm.210343	NM_177215	ENSMUSG00000001173	Ocrl	9530014D17Rik|BB143339|OCRL1	oculocerebrorenal syndrome of Lowe	protein-coding	0.020000	0.482587	-39(TTCTCTAAAAGG,-,0.00)
mm_171756.1	chr5	105053473	105053673	-	1	NA	NA	NA	-12	NM_029509	76074	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0.000000	0.502488	
mm_32851.1	chr4	117982874	117983074	+	1	NA	NA	NA	-53211	NM_001284192	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.015000	0.582090	
mm_117989.1	chr13	100247238	100247438	-	1	NA	NA	NA	-2	NM_010870	17951	Mm.290476	NM_010870	ENSMUSG00000071203	Naip5	Birc1e|Lgn1|Naip-rs3	NLR family, apoptosis inhibitory protein 5	protein-coding	0.005000	0.502488	-79(TCCTTTAAGAGG,-,0.00),-78(CCTTTAAGAGGC,+,0.00)
mm_58513.1	chr7	4129226	4129426	+	1	NA	NA	NA	7600	NR_033548	100037396	Mm.447887	NR_033548	ENSMUSG00000085886	D030047H15Rik	Gm15924|OTTMUSG00000027889	RIKEN cDNA D030047H15 gene	ncRNA	0.005000	0.537313	
mm_45338.1	chr5	65698112	65698312	-	1	NA	NA	NA	-356	NM_001081321	71521	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0.210000	0.830846	
mm_49649.1	chr6	30806302	30806502	+	1	NA	NA	NA	65103	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.005000	0.358209	
mm_36225.1	chr4	62524694	62524894	-	1	NA	NA	NA	220	NM_021498	59001	Mm.27444	NM_021498	ENSMUSG00000028394	Pole3	1810034K18Rik|YBL1	polymerase (DNA directed), epsilon 3 (p17 subunit)	protein-coding	0.085000	0.611940	
mm_58832.1	chr7	16792438	16792638	+	1	NA	NA	NA	11192	NM_009201	20514	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	0.010000	0.522388	
mm_36424.1	chr4	81572145	81572345	-	1	NA	NA	NA	-85232	NR_030570	100124446		NR_030570	ENSMUSG00000077941	Mir466h	Mirn466h	microRNA 466h	ncRNA	0.020000	0.452736	
mm_64310.1	chr7	141864274	141864474	+	1	NA	NA	NA	25302	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.015000	0.447761	
mm_61842.1	chr7	88290732	88290932	+	1	NA	NA	NA	12747	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.005000	0.432836	
mm_15533.1	chr2	158382936	158383136	+	1	NA	NA	NA	7398	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.020000	0.407960	
mm_42059.1	chr5	108694262	108694462	+	1	NA	NA	NA	133	NM_054071	116701	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0.180000	0.855721	
mm_30264.1	chr3	146770135	146770335	-	1	NA	NA	NA	3	NM_001164198	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.015000	0.383085	
mm_106131.1	chr11	116459865	116460065	-	1	NA	NA	NA	-5618	NM_001033267	217341	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0.010000	0.477612	
mm_77566.1	chr8	123428977	123429177	-	1	NA	NA	NA	-13879	NM_001253784	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.025000	0.492537	
mm_28109.1	chr3	86548435	86548635	-	1	NA	NA	NA	-252	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.025000	0.457711	
mm_84460.1	chr9	66583083	66583283	-	1	NA	NA	NA	9932	NM_144937	235441	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.000000	0.263682	
mm_41820.1	chr5	103846494	103846694	+	1	NA	NA	NA	64635	NM_178741	246293	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0.005000	0.432836	
mm_94351.1	chr11	4902145	4902345	+	1	NA	NA	NA	6902	NM_172438	107829	Mm.28969	NM_172438	ENSMUSG00000034274	Thoc5	1700060C24Rik|A430085L24Rik|Fmip|PK1.3|Sgk2	THO complex 5	protein-coding	0.010000	0.512438	
mm_26506.1	chr3	145758874	145759074	+	1	NA	NA	NA	282	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.125000	0.751244	
mm_7970.1	chr1	134060768	134060968	-	1	NA	NA	NA	18287	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.035000	0.557214	
mm_77305.1	chr8	117461400	117461600	-	1	NA	NA	NA	2235	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.005000	0.492537	
mm_167378.1	chr8	92355768	92355968	-	1	NA	NA	NA	252	NR_110452	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	0.185000	0.810945	
mm_98125.1	chr11	87216855	87217055	+	1	NA	NA	NA	89880	NM_197987	68729	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.010000	0.273632	
mm_150437.1	chr19	37556619	37556819	+	1	NA	NA	NA	6301	NM_175353	107371	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0.005000	0.467662	
mm_127445.1	chr15	101270460	101270660	+	1	NA	NA	NA	3714	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.030000	0.601990	
mm_140861.1	chr17	23740774	23740974	-	1	NA	NA	NA	-544	NM_023824	76498	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	0.040000	0.587065	-66(GGCGATAAAAGG,-,0.00)
mm_133909.1	chr16	97551880	97552080	+	1	NA	NA	NA	15897	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.025000	0.412935	
mm_79445.1	chr9	56090286	56090486	+	1	NA	NA	NA	410	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.040000	0.631841	
mm_103038.1	chr11	69761794	69761994	-	1	NA	NA	NA	-50	NM_019871	56293	Mm.6211	NM_019871	ENSMUSG00000018776	Slc35g3	Amac1	solute carrier family 35, member G3	protein-coding	0.010000	0.497512	
mm_154930.1	chrX	35888561	35888761	+	1	NA	NA	NA	-171	NM_001009947	75974	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	0.055000	0.681592	
mm_41177.1	chr5	88008021	88008221	+	1	NA	NA	NA	5596	NM_011422	20599	Mm.261199	NM_011422	ENSMUSG00000029280	Smr3a	AA589601|MSG1|MSG3|Smr1|Smr3	submaxillary gland androgen regulated protein 3A	protein-coding	0.005000	0.582090	
mm_49468.1	chr6	29467691	29467891	+	1	NA	NA	NA	8	NM_025381	66144	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	0.085000	0.626866	
mm_115693.1	chr13	14039517	14039717	-	1	NA	NA	NA	21	NR_130788	70430	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	0.070000	0.562189	
mm_55108.1	chr6	50381554	50381754	-	1	NA	NA	NA	1183	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.015000	0.457711	
mm_168006.1	chrY	4453525	4453725	-	1	NA	NA	NA	681952	NM_011253	19657	Mm.4711	NM_011253	ENSMUSG00000094658	Rbmy	RBM|Rbm1|Rbm1-rs1|Rbmy1a1|Rbmy1a1-rs1|Rbmy1b	RNA binding motif protein, Y chromosome	protein-coding	0.005000	0.432836	
mm_125050.1	chr15	25843157	25843357	+	1	NA	NA	NA	-41	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.145000	0.776119	
mm_70820.1	chr8	23132041	23132241	+	1	NA	NA	NA	-6889	NM_001310436	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.060000	0.616915	
mm_41439.1	chr5	90904288	90904488	+	1	NA	NA	NA	489	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.030000	0.507463	
mm_99851.1	chr11	109362776	109362976	+	1	NA	NA	NA	82	NM_010303	14674	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0.135000	0.815920	
mm_161567.1	chr16	20152789	20152989	+	1	NA	NA	NA	11826	NM_001145930	208146	Mm.390895	NM_001033237	ENSMUSG00000041215	Yeats2	BC042768|mKIAA1197	YEATS domain containing 2	protein-coding	0.005000	0.383085	
mm_95373.1	chr11	49088625	49088825	+	1	NA	NA	NA	1708	NM_008330	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.005000	0.398010	
mm_40737.1	chr5	66260018	66260218	+	1	NA	NA	NA	220	NM_001302834	70918	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	0.120000	0.741294	
mm_1021.1	chr1	58749306	58749506	+	1	NA	NA	NA	18854	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.010000	0.452736	11(CCATTTAAACGC,+,0.00)
mm_3087.1	chr1	134406221	134406421	+	1	NA	NA	NA	331	NM_028057	72017	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	0.055000	0.631841	
mm_22655.1	chr3	14871505	14871705	+	1	NA	NA	NA	8067	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.025000	0.597015	
mm_70660.1	chr8	14849829	14850029	+	1	NA	NA	NA	-38607	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.015000	0.402985	
mm_67896.1	chr7	99483550	99483750	-	1	NA	NA	NA	59	NM_012052	27050	Mm.236868	NM_012052	ENSMUSG00000030744	Rps3	D7Ertd795e|Rs_3	ribosomal protein S3	protein-coding	0.105000	0.601990	-34(CCCTATATACCT,+,0.00)
mm_17647.1	chr2	31481101	31481301	-	1	NA	NA	NA	10893	NR_002687	432466	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.020000	0.587065	
mm_71029.1	chr8	33599581	33599781	+	1	NA	NA	NA	60	NM_017374	19053	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	0.160000	0.776119	
mm_66756.1	chr7	46714248	46714448	-	1	NA	NA	NA	1328	NM_011315	20210	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	0.010000	0.462687	
mm_23484.1	chr3	60500593	60500793	+	1	NA	NA	NA	-486	NM_001253711	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.015000	0.457711	
mm_101933.1	chr11	50207089	50207289	-	1	NA	NA	NA	3631	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.030000	0.587065	
mm_147652.1	chr18	60501660	60501860	-	1	NA	NA	NA	223	NM_134133	106878	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.020000	0.517413	
mm_57217.1	chr6	122933965	122934165	-	1	NA	NA	NA	12217	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.005000	0.472637	
mm_16947.1	chr2	16571765	16571965	-	1	NA	NA	NA	215561	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.000000	0.512438	-36(CACTATAAAAGG,-,0.00),-4(CTCTCTTTAAGC,-,0.00)
mm_115648.1	chr13	12306557	12306757	-	1	NA	NA	NA	34075	NM_033268	11472	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	0.005000	0.343284	
mm_140983.1	chr17	24719824	24720024	-	1	NA	NA	NA	41	NR_027900	73474	Mm.443320	NR_027900	ENSMUSG00000090101	Snhg9	1700072N11Rik	small nucleolar RNA host gene 9	ncRNA	0.130000	0.666667	
mm_2912.1	chr1	132008201	132008401	+	1	NA	NA	NA	696	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.080000	0.621891	
mm_89035.1	chr10	82795083	82795283	+	1	NA	NA	NA	-16940	NR_038042	70003	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	0.025000	0.547264	
mm_130429.1	chr15	98157195	98157395	-	1	NA	NA	NA	8283	NM_001170711	78541	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0.010000	0.432836	
mm_157160.1	chrX	9465208	9465408	-	1	NA	NA	NA	4016	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.298507	-2(GGGTTTATGAGC,-,0.00)
mm_2630.1	chr1	121430988	121431188	+	1	NA	NA	NA	21	NM_001025156	70829	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	0.075000	0.631841	
mm_173003.1	chrM	1819	2019	+	1	NA	NA	NA	NA	NA									0.030000	0.422886	
mm_81782.1	chr9	114689782	114689982	+	1	NA	NA	NA	1051	NM_146229	235661	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	0.010000	0.427861	
mm_45230.1	chr5	53590085	53590285	-	1	NA	NA	NA	-161	NM_009035	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.080000	0.606965	
mm_143633.1	chr17	78966242	78966442	-	1	NA	NA	NA	29207	NM_028611	73694	Mm.104959	NM_028611	ENSMUSG00000024082	Ndufaf7	2410091C18Rik|AL033374|PRO1853	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7	protein-coding	0.035000	0.472637	
mm_25242.1	chr3	103914483	103914683	+	1	NA	NA	NA	463	NM_172684	229675	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0.105000	0.661692	
mm_82157.1	chr9	123781126	123781326	+	1	NA	NA	NA	14015	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.000000	0.522388	
mm_180.1	chr1	13874273	13874473	+	1	NA	NA	NA	-87444	NR_004447	433273	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.005000	0.417910	52(CCTCTTAGACAC,+,0.00)
mm_50835.1	chr6	54816624	54816824	+	1	NA	NA	NA	-192	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.150000	0.751244	
mm_90722.1	chr10	5068836	5069036	-	1	NA	NA	NA	127	NM_022027	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.015000	0.532338	-50(GCCTAGATAAGG,-,0.00)
mm_42189.1	chr5	112269392	112269592	+	1	NA	NA	NA	-7199	NM_001326590	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.065000	0.641791	75(GTTCTTATAGCC,+,0.00)
mm_163133.1	chr11	78940477	78940677	+	1	NA	NA	NA	15286	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.005000	0.597015	
mm_30588.1	chr4	5724231	5724431	+	1	NA	NA	NA	80152	NM_173426	242297	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0.020000	0.492537	
mm_15828.1	chr2	164653731	164653931	+	1	NA	NA	NA	1135	NM_001160414	629754	Mm.190489	NM_001160414	ENSMUSG00000074594	Wfdc9	OTTMUSG00000001088	WAP four-disulfide core domain 9	protein-coding	0.010000	0.512438	
mm_60567.1	chr7	44481345	44481545	+	1	NA	NA	NA	-3072	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.502488	
mm_52225.1	chr6	103511304	103511504	+	1	NA	NA	NA	528	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.030000	0.547264	
mm_49044.1	chr6	4760151	4760351	+	1	NA	NA	NA	12945	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.015000	0.522388	
mm_141319.1	chr17	28365063	28365263	-	1	NA	NA	NA	-20	NM_021478	22157	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.035000	0.631841	
mm_6356.1	chr1	71741228	71741428	-	1	NA	NA	NA	87993	NR_040308	100042814	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	ENSMUSG00000073652|Gm15456|OTTMUSG00000022136	apolipoprotein L 7d	ncRNA	0.000000	0.537313	
mm_119539.1	chr14	48120661	48120861	+	1	NA	NA	NA	-108	NM_033602	93834	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	0.120000	0.691542	-43(GCCCCTTTAAGG,-,0.00),-42(CCCCTTTAAGGG,-,0.00),-41(CCCTTTAAGGGC,+,0.00),-40(CCTTTAAGGGCT,+,0.00)
mm_104143.1	chr11	87026557	87026757	-	1	NA	NA	NA	-32895	NM_001005341	77864	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee-like 2 (Drosophila)	protein-coding	0.005000	0.462687	
mm_8316.1	chr1	144307078	144307278	-	1	NA	NA	NA	-58074	NM_015811	50778	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.030000	0.447761	
mm_69506.1	chr7	134341886	134342086	-	1	NA	NA	NA	22898	NM_001199941	71007	Mm.334285	NM_001081331	ENSMUSG00000030994	D7Ertd443e	4933400E14Rik|FATS|Gm497	DNA segment, Chr 7, ERATO Doi 443, expressed	protein-coding	0.000000	0.492537	
mm_94676.1	chr11	17905841	17906041	+	1	NA	NA	NA	47934	NM_026576	68145	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	0.000000	0.427861	
mm_170664.1	chr2	113920458	113920658	-	1	NA	NA	NA	-71897	NM_181416	228482	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	0.035000	0.447761	-66(CTTTTTATAAGG,+,0.00),-66(CTTTTTATAAGG,-,0.00)
mm_6980.1	chr1	86356216	86356416	-	1	NA	NA	NA	11	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.000000	0.412935	
mm_172597.1	chr8	15519702	15519902	+	1	NA	NA	NA	462149	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.050000	0.477612	
mm_74639.1	chr8	13254036	13254236	-	1	NA	NA	NA	26	NM_172750	234072	Mm.132785	NM_172750	ENSMUSG00000031448	Adprhl1	Arh2|D330008N11Rik	ADP-ribosylhydrolase like 1	protein-coding	0.025000	0.572139	
mm_39579.1	chr5	23435288	23435488	+	1	NA	NA	NA	959	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.045000	0.552239	
mm_135312.1	chr16	38713113	38713313	-	1	NA	NA	NA	-178	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.085000	0.646766	
mm_143346.1	chr17	66693930	66694130	-	1	NA	NA	NA	-99408	NM_028998	74556	Mm.218634	NM_028998	ENSMUSG00000024105	Themis3	9130404H23Rik	thymocyte selection associated family member 3	protein-coding	0.030000	0.522388	
mm_95443.1	chr11	50236760	50236960	+	1	NA	NA	NA	1672	NM_001313968	17001	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.055000	0.701493	
mm_37008.1	chr4	111902692	111902892	-	1	NA	NA	NA	4	NM_145551	230612	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding	0.000000	0.547264	
mm_131477.1	chr16	17070244	17070444	+	1	NA	NA	NA	205	NM_001291047	106369	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee-like 1 (Drosophila)	protein-coding	0.145000	0.751244	
mm_150411.1	chr19	36926572	36926772	+	1	NA	NA	NA	593	NM_001080706	107182	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0.050000	0.398010	
mm_5903.1	chr1	54914145	54914345	-	1	NA	NA	NA	12142	NM_001081433	329154	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.005000	0.283582	-5(TCTTTTAGAGTG,+,0.00)
mm_33832.1	chr4	135626684	135626884	+	1	NA	NA	NA	129	NR_027909	73937	Mm.292326	NM_028688	ENSMUSG00000086788	1700029M20Rik	4930406E24Rik	RIKEN cDNA 1700029M20 gene	ncRNA	0.035000	0.537313	
mm_83641.1	chr9	49504218	49504418	-	1	NA	NA	NA	-13970	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.005000	0.462687	
mm_95515.1	chr11	52098708	52098908	+	1	NA	NA	NA	-16	NM_019411	19052	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.145000	0.756219	
mm_150107.1	chr19	29522286	29522486	+	1	NA	NA	NA	104	NM_001081319	226089	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0.160000	0.810945	
mm_112169.1	chr12	113415460	113415660	-	1	NA	NA	NA	-74005	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.462687	
mm_135814.1	chr16	57606748	57606948	-	1	NA	NA	NA	19	NM_025599	66497	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	0.105000	0.636816	
mm_84476.1	chr9	66804250	66804450	-	1	NA	NA	NA	-8927	NM_177583	208117	Mm.41291	NM_177583	ENSMUSG00000032375	Aph1b	2310057K14Rik|Aph1c	aph1 homolog B, gamma secretase subunit	protein-coding	0.005000	0.487562	-61(CCTTTTATAGTG,+,0.00)
mm_41836.1	chr5	104309237	104309437	+	1	NA	NA	NA	10050	NM_008318	15891	Mm.4987	NM_008318	ENSMUSG00000029306	Ibsp	BSP|BSP II|BSPII|Bsp2	integrin binding sialoprotein	protein-coding	0.025000	0.482587	
mm_142660.1	chr17	47688803	47689003	-	1	NA	NA	NA	-517	NM_001164729	66119	Mm.89912	NM_025365	ENSMUSG00000033475	Tomm6	1110002E23Rik|AI663970	translocase of outer mitochondrial membrane 6 homolog (yeast)	protein-coding	0.075000	0.686567	
mm_89118.1	chr10	84756092	84756292	+	1	NA	NA	NA	144	NM_001024918	71137	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.055000	0.512438	
mm_50272.1	chr6	45267193	45267393	+	1	NA	NA	NA	207232	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.000000	0.353234	
mm_163241.1	chr11	105456662	105456862	-	1	NA	NA	NA	-27	NM_001039242	632687	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|OTTMUSG00000002847|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.110000	0.731343	
mm_157747.1	chrX	73435241	73435441	-	1	NA	NA	NA	2	NM_011907	24102	Mm.23312	NM_011907	ENSMUSG00000031372	Trex2	-	three prime repair exonuclease 2	protein-coding	0.025000	0.626866	
mm_88963.1	chr10	81394716	81394916	+	1	NA	NA	NA	1752	NM_001099917	72273	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.015000	0.517413	
mm_95662.1	chr11	53771616	53771816	+	1	NA	NA	NA	1243	NM_001159396	16362	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.015000	0.452736	
mm_85158.1	chr9	96333194	96333394	-	1	NA	NA	NA	31005	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.020000	0.517413	
mm_50191.1	chr6	41847450	41847650	+	1	NA	NA	NA	1	NM_008843	18716	Mm.214755	NM_008843	ENSMUSG00000058499	Pip	GCDFP-15|GP17|mSMGP	prolactin induced protein	protein-coding	0.010000	0.472637	
mm_49119.1	chr6	8509766	8509966	+	1	NA	NA	NA	266	NM_133236	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.150000	0.781095	
mm_23461.1	chr3	60472699	60472899	+	1	NA	NA	NA	-31	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.015000	0.368159	
mm_84852.1	chr9	78480708	78480908	-	1	NA	NA	NA	916	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.060000	0.537313	
mm_162699.1	chr10	20952472	20952672	+	1	NA	NA	NA	25	NM_026203	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.135000	0.746269	
mm_117760.1	chr13	96132426	96132626	-	1	NA	NA	NA	51	NM_029210	75209	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	0.090000	0.696517	
mm_138068.1	chr17	33940585	33940785	+	1	NA	NA	NA	-38	NM_020603	57315	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	0.070000	0.597015	
mm_156700.1	chrX	159532562	159532762	+	1	NA	NA	NA	-6	NM_001033472	382252	Mm.296254	NM_001033472	ENSMUSG00000044150	A830080D01Rik	2310067E24Rik|Gm1146	RIKEN cDNA A830080D01 gene	protein-coding	0.085000	0.701493	
mm_79282.1	chr9	50856863	50857063	+	1	NA	NA	NA	39	NM_001286553	73699	Mm.7726	NM_028614	ENSMUSG00000032058	Ppp2r1b	2410091N08Rik|AI790395	protein phosphatase 2, regulatory subunit A, beta	protein-coding	0.110000	0.706468	
mm_77483.1	chr8	122476006	122476206	-	1	NA	NA	NA	-37	NM_153775	66965	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0.160000	0.776119	
mm_134928.1	chr16	30933313	30933513	-	1	NA	NA	NA	148019	NM_198626	268880	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.025000	0.537313	
mm_153354.1	chr19	40157816	40158016	-	1	NA	NA	NA	29370	NM_145499	226105	Mm.29119	NM_145499	ENSMUSG00000060613	Cyp2c70	-	cytochrome P450, family 2, subfamily c, polypeptide 70	protein-coding	0.005000	0.313433	37(TCCCATAAAAAC,-,0.00)
mm_145587.1	chr18	60985681	60985881	+	1	NA	NA	NA	22227	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.000000	0.532338	
mm_5176.1	chr1	11395381	11395581	-	1	NA	NA	NA	-18624	NM_001310451	320492	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding	0.010000	0.477612	9(CCTCATATGGAG,+,0.00)
mm_66709.1	chr7	45973193	45973393	-	1	NA	NA	NA	44895	NM_001033243	211535	Mm.227539	NM_001033243	ENSMUSG00000040189	Ccdc114	-	coiled-coil domain containing 114	protein-coding	0.005000	0.517413	
mm_1554.1	chr1	72942649	72942849	+	1	NA	NA	NA	-67884	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.010000	0.447761	
mm_128905.1	chr15	73423028	73423228	-	1	NA	NA	NA	63	NM_007982	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.195000	0.815920	
mm_134846.1	chr16	26755401	26755601	-	1	NA	NA	NA	1	NR_105063	100504628	Mm.393275	NR_105063	ENSMUSG00000092545	Gm20319	-	predicted gene, 20319	ncRNA	0.000000	0.333333	
mm_44103.1	chr5	149367467	149367667	+	1	NA	NA	NA	-44239	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.000000	0.422886	-91(TCTTTTAGACTC,+,0.00)
mm_19655.1	chr2	102901914	102902114	-	1	NA	NA	NA	-349	NM_001039150	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.010000	0.522388	
mm_100170.1	chr11	116531905	116532105	+	1	NA	NA	NA	94	NM_001172475	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.050000	0.562189	54(GACTTTAAGAAG,-,0.00)
mm_109626.1	chr12	112766702	112766902	+	1	NA	NA	NA	6147	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.020000	0.537313	
mm_135091.1	chr16	34573829	34574029	-	1	NA	NA	NA	-59902	NM_177357	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.155000	0.796020	
mm_151428.1	chr19	56897752	56897952	+	1	NA	NA	NA	23436	NM_172840	240675	Mm.129534	NM_172840	ENSMUSG00000025082	Vwa2	Amaco	von Willebrand factor A domain containing 2	protein-coding	0.030000	0.606965	
mm_105780.1	chr11	109722254	109722454	-	1	NA	NA	NA	-98	NM_153782	208659	Mm.208662	NM_153782	ENSMUSG00000020614	Fam20a	AI606893	family with sequence similarity 20, member A	protein-coding	0.045000	0.636816	
mm_44237.1	chr5	5265698	5265898	-	1	NA	NA	NA	270	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.020000	0.388060	-97(ACCTATTAAAGC,-,0.00)
mm_27759.1	chr3	69599094	69599294	-	1	NA	NA	NA	-234	NM_020026	26879	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0.015000	0.502488	
mm_96042.1	chr11	59557248	59557448	+	1	NA	NA	NA	14390	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.025000	0.373134	
mm_105259.1	chr11	102356400	102356600	-	1	NA	NA	NA	8781	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.020000	0.552239	
mm_86350.1	chr9	123632409	123632609	-	1	NA	NA	NA	56	NM_011731	22599	Mm.41963	NM_011731	ENSMUSG00000025243	Slc6a20b	AA986306|Sit1|Slc6a20|XT3|Xtrp3	solute carrier family 6 (neurotransmitter transporter), member 20B	protein-coding	0.020000	0.522388	
mm_43710.1	chr5	139377631	139377831	+	1	NA	NA	NA	34	NR_033147	320197	Mm.474295	NM_177097	ENSMUSG00000044197	D830046C22Rik	-	RIKEN cDNA D830046C22 gene	ncRNA	0.035000	0.572139	
mm_61899.1	chr7	90129612	90129812	+	1	NA	NA	NA	224	NR_046007	78329	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	0.045000	0.532338	
mm_40404.1	chr5	53049029	53049229	+	1	NA	NA	NA	-224	NM_011402	20531	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	0.090000	0.691542	
mm_56792.1	chr6	116647562	116647762	-	1	NA	NA	NA	-1615	NR_106010	102466793		NR_106010	ENSMUSG00000098334	Mir7043	Gm27776|mmu-mir-7043	microRNA 7043	ncRNA	0.030000	0.552239	
mm_57209.1	chr6	122855469	122855669	-	1	NA	NA	NA	588	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.010000	0.388060	
mm_171264.1	chr3	85166514	85166714	-	1	NA	NA	NA	-150905	NR_040542	73283	Mm.489084	NR_040542	ENSMUSG00000099995	1700036G14Rik	-	RIKEN cDNA 1700036G14 gene	ncRNA	0.015000	0.467662	
mm_80724.1	chr9	92457279	92457479	+	1	NA	NA	NA	1	NM_178711	235527	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	0.025000	0.497512	
mm_22035.1	chr2	168204583	168204783	-	1	NA	NA	NA	2429	NM_009628	11538	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0.020000	0.472637	
mm_117528.1	chr13	81711224	81711424	-	1	NA	NA	NA	-93	NM_028372	72852	Mm.31095	NM_028372	ENSMUSG00000051098	Mblac2	2900024O10Rik	metallo-beta-lactamase domain containing 2	protein-coding	0.090000	0.676617	
mm_39493.1	chr5	20951083	20951283	+	1	NA	NA	NA	194	NR_030699	320770	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.140000	0.701493	
mm_19434.1	chr2	91962393	91962593	-	1	NA	NA	NA	1070	NM_138306	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.000000	0.447761	
mm_6158.1	chr1	65032646	65032846	-	1	NA	NA	NA	13	NM_027582	70861	Mm.18725	NM_027582	ENSMUSG00000025955	Akr1cl	4921521F21Rik|AI451536|AI503553	aldo-keto reductase family 1, member C-like	protein-coding	0.000000	0.407960	
mm_97342.1	chr11	77462273	77462473	+	1	NA	NA	NA	-1540	NM_139129	216961	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.110000	0.641791	
mm_68749.1	chr7	121064683	121064883	-	1	NA	NA	NA	9747	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.005000	0.373134	
mm_145663.1	chr18	61130815	61131015	+	1	NA	NA	NA	13447	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.010000	0.542289	
mm_108473.1	chr12	83651206	83651406	+	1	NA	NA	NA	19072	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.005000	0.343284	-5(GAGTATAAAGAG,-,0.00)
mm_48258.1	chr5	137836089	137836289	-	1	NA	NA	NA	89	NM_153510	231805	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.005000	0.552239	
mm_5905.1	chr1	54926257	54926457	-	1	NA	NA	NA	30	NM_001081433	329154	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.135000	0.761194	-22(CTGTATAAAGGC,-,0.00)
mm_119869.1	chr14	54625211	54625411	+	1	NA	NA	NA	1	NM_175204	73902	Mm.32009	NM_175204	ENSMUSG00000072423	Psmb11	5830406J20Rik|beta5t	proteasome (prosome, macropain) subunit, beta type, 11	protein-coding	0.020000	0.616915	
mm_76570.1	chr8	88662279	88662479	-	1	NA	NA	NA	15032	NM_145857	257632	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0.000000	0.527363	
mm_128947.1	chr15	74746719	74746919	-	1	NA	NA	NA	-132	NM_001081961	69462	Mm.64338	NM_001081961	ENSMUSG00000075605	Slurp2	2300005B03Rik|SLURP-2	secreted Ly6/Plaur domain containing 2	protein-coding	0.000000	0.562189	
mm_74754.1	chr8	19064849	19065049	-	1	NA	NA	NA	-139	NM_183038	360214	Mm.271559	NM_183038	ENSMUSG00000061847	Defb39	BD-39	defensin beta 39	protein-coding	0.005000	0.452736	
mm_133929.1	chr16	3718059	3718259	-	1	NA	NA	NA	-35	NM_001161791	54483	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.030000	0.512438	
mm_61133.1	chr7	55930066	55930266	+	1	NA	NA	NA	32327	NM_001256133	93790	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	0.010000	0.457711	
mm_74209.1	chr8	123895758	123895958	+	1	NA	NA	NA	-1083	NM_009606	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.020000	0.532338	50(CTATTTATACCG,+,0.00)
mm_42527.1	chr5	115631789	115631989	+	1	NA	NA	NA	-73	NR_027810	66123	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	0.140000	0.796020	
mm_17419.1	chr2	27426412	27426612	-	1	NA	NA	NA	1096	NR_133905	22325	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.150000	0.776119	
mm_136326.1	chr16	92321358	92321558	-	1	NA	NA	NA	-17	NM_029252	75328	Mm.72970	NM_029252	ENSMUSG00000051728	4930563D23Rik	-	RIKEN cDNA 4930563D23 gene	protein-coding	0.025000	0.527363	
mm_142738.1	chr17	48388503	48388703	-	1	NA	NA	NA	11977	NM_001347402	18044	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	0.005000	0.393035	-66(GGACCTAAAAGG,-,0.00)
mm_75658.1	chr8	65132305	65132505	-	1	NA	NA	NA	-2868	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA	0.015000	0.427861	
mm_69937.1	chr7	142095148	142095348	-	1	NA	NA	NA	36	NM_008748	18218	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	0.160000	0.791045	
mm_145368.1	chr18	56733084	56733284	+	1	NA	NA	NA	25371	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.010000	0.487562	
mm_167612.1	chr9	56090001	56090201	+	1	NA	NA	NA	125	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.020000	0.646766	
mm_69145.1	chr7	127091058	127091258	-	1	NA	NA	NA	-278	NM_178901	101602	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	0.020000	0.592040	
mm_46517.1	chr5	105293654	105293854	-	1	NA	NA	NA	-55	NM_194336	100702	Mm.491210	NM_194336	ENSMUSG00000079362	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	0.000000	0.482587	
mm_133675.1	chr16	92292269	92292469	+	1	NA	NA	NA	-20	NM_134110	246133	Mm.156736	NM_134110	ENSMUSG00000039672	Kcne2	2200002I16Rik|AW048273|MiRP1	potassium voltage-gated channel, Isk-related subfamily, gene 2	protein-coding	0.030000	0.512438	
mm_134767.1	chr16	23520596	23520796	-	1	NA	NA	NA	-106	NM_008555	17174	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0.025000	0.567164	
mm_95207.1	chr11	43594457	43594657	+	1	NA	NA	NA	7005	NM_008375	16204	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0.005000	0.512438	
mm_137217.1	chr17	24169882	24170082	+	1	NA	NA	NA	-553	NM_009729	11984	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0.035000	0.562189	-31(GCTTTAAAGTGC,+,0.00)
mm_16260.1	chr2	173291143	173291343	+	1	NA	NA	NA	-14710	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.035000	0.572139	
mm_87005.1	chr10	26801428	26801628	+	1	NA	NA	NA	29016	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.010000	0.368159	
mm_162617.1	chr1	183369445	183369645	-	1	NA	NA	NA	20	NM_177389	338366	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	0.125000	0.776119	
mm_57075.1	chr6	122578569	122578769	-	1	NA	NA	NA	23775	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.005000	0.417910	
mm_79868.1	chr9	65082398	65082598	+	1	NA	NA	NA	-18988	NM_001290315	56741	Mm.209041	NM_020043	ENSMUSG00000032816	Igdcc4	DDM36|Nope	immunoglobulin superfamily, DCC subclass, member 4	protein-coding	0.005000	0.462687	
mm_11277.1	chr2	30061962	30062162	+	1	NA	NA	NA	66	NM_023871	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.050000	0.616915	
mm_157282.1	chrX	20860889	20861089	-	1	NA	NA	NA	2193	NR_049190	100885829		NR_049190	ENSMUSG00000093408	Mir5617	Gm25192|mir-5617|mmu-mir-5617	microRNA 5617	ncRNA	0.000000	0.462687	
mm_107301.1	chr12	30911681	30911881	+	1	NA	NA	NA	112	NM_013709	24057	Mm.218624	NM_013709	ENSMUSG00000020669	Sh3yl1	AI314953|Ray|YSC84	Sh3 domain YSC-like 1	protein-coding	0.060000	0.636816	
mm_83509.1	chr9	45984474	45984674	-	1	NA	NA	NA	297	NM_008775	18475	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0.150000	0.825871	
mm_32964.1	chr4	119847700	119847900	+	1	NA	NA	NA	33122	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.010000	0.507463	
mm_88924.1	chr10	81194982	81195182	+	1	NA	NA	NA	391	NR_015477	69678	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0.005000	0.517413	
mm_86092.1	chr9	114986606	114986806	-	1	NA	NA	NA	-52719	NM_175380	333433	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	0.010000	0.467662	
mm_43452.1	chr5	136136173	136136373	+	1	NA	NA	NA	128	NM_001347492	72041	Mm.486605	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	0.055000	0.537313	
mm_93518.1	chr10	115287928	115288128	-	1	NA	NA	NA	27563	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.005000	0.298507	
mm_133566.1	chr16	91399895	91400095	+	1	NA	NA	NA	-6240	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.025000	0.482587	
mm_167297.1	chr8	47674729	47674929	-	1	NA	NA	NA	330	NM_023503	69260	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.140000	0.761194	
mm_125249.1	chr15	35023948	35024148	+	1	NA	NA	NA	131758	NM_019635	56274	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0.010000	0.477612	
mm_160526.1	chr9	36582525	36582725	-	1	NA	NA	NA	10	NM_001167584	100312948	Mm.475849	NM_001167584	ENSMUSG00000091248	Gm17689	Pate-g|Pate8	predicted gene, 17689	protein-coding	0.005000	0.427861	
mm_30111.1	chr3	139019512	139019712	-	1	NA	NA	NA	55589	NM_145544	229877	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.000000	0.388060	
mm_56439.1	chr6	97457165	97457365	-	1	NA	NA	NA	2021	NM_001346639	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.010000	0.532338	
mm_23261.1	chr3	51416507	51416707	+	1	NA	NA	NA	591	NM_053089	74838	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0.145000	0.766169	
mm_140660.1	chr17	12868037	12868237	-	1	NA	NA	NA	6	NM_008552	17171	Mm.425994	NM_008552	ENSMUSG00000068037	Mas1	Mas-1|Mgra	MAS1 oncogene	protein-coding	0.000000	0.487562	-57(GCTTTTAGAATC,+,0.00)
mm_97753.1	chr11	80505165	80505365	+	1	NA	NA	NA	3841	NR_126552	77417	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	0.005000	0.477612	
mm_148079.1	chr18	72351047	72351247	-	1	NA	NA	NA	-78	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.055000	0.562189	
mm_98533.1	chr11	95006345	95006545	+	1	NA	NA	NA	-3434	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.000000	0.487562	
mm_48766.1	chr5	148399757	148399957	-	1	NA	NA	NA	47	NM_007513	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.135000	0.736318	
mm_12431.1	chr2	70661358	70661558	+	1	NA	NA	NA	-51	NR_027343	70231	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|ENSMUSG00000075299|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.140000	0.686567	
mm_132237.1	chr16	32750557	32750757	+	1	NA	NA	NA	14771	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.005000	0.462687	
mm_160498.1	chr9	14500454	14500654	-	1	NA	NA	NA	-65	NM_023153	66070	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	0.050000	0.472637	25(TTTTTTAAACCG,+,0.00)
mm_69570.1	chr7	135700749	135700949	-	1	NA	NA	NA	15530	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.015000	0.447761	
mm_23018.1	chr3	34561130	34561330	+	1	NA	NA	NA	849	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA	0.005000	0.303483	52(ATTTTTATAGAC,+,0.00)
mm_103660.1	chr11	78984852	78985052	-	1	NA	NA	NA	-28	NM_010708	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.015000	0.562189	
mm_8959.1	chr1	164899488	164899688	-	1	NA	NA	NA	35922	NM_008510	16963	Mm.190	NM_008510	ENSMUSG00000026573	Xcl1	AI661682|ATAC|LTN|Lptn|SCM-1|SCM-1a|Scyc1	chemokine (C motif) ligand 1	protein-coding	0.020000	0.422886	
mm_16992.1	chr2	18291916	18292116	-	1	NA	NA	NA	100814	NM_001190817	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.010000	0.303483	
mm_10415.1	chr2	13579963	13580163	+	1	NA	NA	NA	5752	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.035000	0.502488	
mm_59918.1	chr7	30419586	30419786	+	1	NA	NA	NA	168	NM_011827	23900	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	0.005000	0.606965	
mm_984.1	chr1	58445419	58445619	+	1	NA	NA	NA	-33	NM_001285827	70225	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding	0.050000	0.567164	
mm_121556.1	chr14	122479960	122480160	+	1	NA	NA	NA	4676	NM_009574	22772	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0.035000	0.378109	
mm_58219.1	chr6	144209320	144209520	-	1	NA	NA	NA	148	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.015000	0.497512	
mm_150648.1	chr19	41911802	41912002	+	1	NA	NA	NA	31	NM_023418	18648	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	0.130000	0.701493	
mm_40241.1	chr5	37737178	37737378	+	1	NA	NA	NA	1759	NM_001081106	231162	Mm.76407	NM_001081106	ENSMUSG00000062329	Cytl1	4930443F05Rik|4Cytl1|C17|Cyt1|Gm147	cytokine-like 1	protein-coding	0.005000	0.502488	
mm_33936.1	chr4	136909755	136909955	+	1	NA	NA	NA	-11011	NM_007572	12259	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	0.015000	0.562189	
mm_142312.1	chr17	42876349	42876549	-	1	NA	NA	NA	-25	NM_009847	12488	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.135000	0.781095	
mm_134723.1	chr16	22898735	22898935	-	1	NA	NA	NA	-4449	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.035000	0.587065	
mm_138425.1	chr17	35069636	35069836	+	1	NA	NA	NA	2411	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.005000	0.497512	-36(GCCTTTCTAGCC,+,0.00)
mm_17650.1	chr2	31845839	31846039	-	1	NA	NA	NA	66	NM_178887	98970	Mm.32080	NM_178887	ENSMUSG00000026841	Fibcd1	AI448887	fibrinogen C domain containing 1	protein-coding	0.160000	0.781095	
mm_104699.1	chr11	97988596	97988796	-	1	NA	NA	NA	-2250	NM_001163608	72324	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0.070000	0.572139	
mm_132701.1	chr16	43363772	43363972	+	1	NA	NA	NA	56324	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.015000	0.522388	
mm_12661.1	chr2	75633962	75634162	+	1	NA	NA	NA	-25197	NM_146130	229279	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.015000	0.587065	
mm_165215.1	chr2	38166047	38166247	-	1	NA	NA	NA	121237	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.020000	0.432836	
mm_99451.1	chr11	102434066	102434266	+	1	NA	NA	NA	3844	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.025000	0.557214	
mm_93124.1	chr10	91171609	91171809	-	1	NA	NA	NA	-90	NM_001080130	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.160000	0.746269	-32(CCTTTTAAACTG,+,0.00)
mm_93102.1	chr10	90587070	90587270	-	1	NA	NA	NA	10479	NM_181398	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.015000	0.383085	88(CCTTTTAGAAGA,+,0.00)
mm_18953.1	chr2	76786610	76786810	-	1	NA	NA	NA	111395	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.040000	0.517413	
mm_172956.1	chr9	88482046	88482246	-	1	NA	NA	NA	251	NM_019666	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.150000	0.721393	
mm_143053.1	chr17	56982041	56982241	-	1	NA	NA	NA	-15	NM_175731	171168	Mm.218784	NM_175731	ENSMUSG00000045019	Acer1	2310024P18Rik|AI662009|Alkcdase1|Asah3|Cer1	alkaline ceramidase 1	protein-coding	0.010000	0.587065	
mm_83767.1	chr9	52048606	52048806	-	1	NA	NA	NA	-1	NR_023357	629557	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.165000	0.771144	
mm_64698.1	chr7	4532345	4532545	-	1	NA	NA	NA	-3	NM_001033548	436022	Mm.425359	NM_001033548	ENSMUSG00000055809	Dnaaf3	6030429G01Rik|b2b1739Clo	dynein, axonemal assembly factor 3	protein-coding	0.035000	0.507463	
mm_169155.1	chr13	63437543	63437743	+	1	NA	NA	NA	-5898	NM_001282942	14088	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	0.035000	0.472637	
mm_28895.1	chr3	97931588	97931788	-	1	NA	NA	NA	1515	NM_001033779	433632	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.010000	0.462687	
mm_152397.1	chr19	10554712	10554912	-	1	NA	NA	NA	951	NM_001277861	68642	Mm.31236	NM_026798	ENSMUSG00000024667	Tmem216	1110017C22Rik|2810441K11Rik|4921533J23Rik|A930021F15Rik|AI482550	transmembrane protein 216	protein-coding	0.000000	0.388060	
mm_113793.1	chr13	46273606	46273806	+	1	NA	NA	NA	-15	NM_001005422	380842	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	0.010000	0.552239	
mm_154474.1	chrM	3949	4149	-	1	NA	NA	NA	NA	NA									0.015000	0.393035	
mm_39933.1	chr5	31697901	31698101	+	1	NA	NA	NA	-49	NM_181281	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.170000	0.741294	
mm_37754.1	chr4	129640921	129641121	-	1	NA	NA	NA	44	NM_001199695	109658	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	0.085000	0.621891	
mm_14059.1	chr2	122636868	122637068	+	1	NA	NA	NA	-919	NM_001004174	433470	Mm.36783	NM_001004174	ENSMUSG00000033213	AA467197	Nmes1|mir-147	expressed sequence AA467197	protein-coding	0.005000	0.442786	
mm_153314.1	chr19	38043480	38043680	-	1	NA	NA	NA	-3	NM_001302140	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.050000	0.527363	
mm_1614.1	chr1	74391446	74391646	+	1	NA	NA	NA	-63	NM_153088	227292	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.120000	0.711443	84(GCCCTTTTAAGG,-,0.00),85(CCCTTTTAAGGG,-,0.00),86(CCTTTTAAGGGG,+,0.00)
mm_40310.1	chr5	43842873	43843073	+	1	NA	NA	NA	24080	NM_009763	12182	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	0.010000	0.482587	
mm_57924.1	chr6	134261942	134262142	-	1	NA	NA	NA	-134287	NM_025778	66813	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.010000	0.477612	
mm_49647.1	chr6	30806127	30806327	+	1	NA	NA	NA	64928	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.005000	0.437811	29(CCCTTTATAATG,+,0.00)
mm_157812.1	chrX	73966253	73966453	-	1	NA	NA	NA	4	NM_008224	15161	Mm.491126	NM_008224	ENSMUSG00000031386	Hcfc1	AW060991|HCF|HCF1	host cell factor C1	protein-coding	0.080000	0.676617	
mm_80043.1	chr9	69226758	69226958	+	1	NA	NA	NA	-62983	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.000000	0.338308	
mm_63920.1	chr7	139264663	139264863	+	1	NA	NA	NA	16281	NM_001098636	101631	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.010000	0.427861	
mm_80905.1	chr9	100597878	100598078	+	1	NA	NA	NA	-26893	NM_001101483	245020	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	0.025000	0.522388	
mm_53181.1	chr6	125432568	125432768	+	1	NA	NA	NA	-52164	NM_198604	213522	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.010000	0.437811	
mm_48956.1	chr6	4540759	4540959	+	1	NA	NA	NA	35241	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.000000	0.417910	
mm_106149.1	chr11	116581394	116581594	-	1	NA	NA	NA	-47	NM_173755	217342	Mm.243950	NM_173755	ENSMUSG00000020802	Ube2o	9630022H21|B230113M03Rik|E2-230K|mKIAA1734	ubiquitin-conjugating enzyme E2O	protein-coding	0.175000	0.786070	
mm_156900.1	chrX	167245405	167245605	+	1	NA	NA	NA	18824	NM_001313761	170744	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	0.005000	0.383085	
mm_80578.1	chr9	84045791	84045991	+	1	NA	NA	NA	97110	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.005000	0.567164	
mm_135.1	chr1	10260231	10260431	+	1	NA	NA	NA	-27661	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.005000	0.517413	
mm_46852.1	chr5	113650319	113650519	-	1	NA	NA	NA	-29	NM_008153	14747	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.040000	0.626866	
mm_145196.1	chr18	49910332	49910532	+	1	NA	NA	NA	-68995	NM_001177760	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.010000	0.432836	
mm_2860.1	chr1	131696524	131696724	+	1	NA	NA	NA	7929	NM_001311096	226421	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0.015000	0.557214	
mm_130271.1	chr15	96698684	96698884	-	1	NA	NA	NA	914	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.130000	0.696517	
mm_52812.1	chr6	121343300	121343500	+	1	NA	NA	NA	324	NM_001347433	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.020000	0.606965	
mm_138605.1	chr17	35590720	35590920	+	1	NA	NA	NA	23335	NM_175148	69542	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	0.020000	0.472637	-31(GTCTTTATAGTC,+,0.00)
mm_91638.1	chr10	42273832	42274032	-	1	NA	NA	NA	2810	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.010000	0.542289	
mm_55560.1	chr6	71341198	71341398	-	1	NA	NA	NA	18486	NM_009858	12526	Mm.333148	NM_009858	ENSMUSG00000053044	Cd8b1	Cd8b|Ly-3|Ly-C|Lyt-3	CD8 antigen, beta chain 1	protein-coding	0.015000	0.577114	
mm_30561.1	chr4	3789825	3790025	+	1	NA	NA	NA	45730	NM_026147	67427	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.005000	0.477612	
mm_91685.1	chr10	43971823	43972023	-	1	NA	NA	NA	32923	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.005000	0.363184	
mm_69102.1	chr7	127020214	127020414	-	1	NA	NA	NA	897	NM_001102563	69017	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.010000	0.562189	
mm_9239.1	chr1	171294874	171295074	-	1	NA	NA	NA	8	NM_025388	66155	Mm.2815	NM_025388	ENSMUSG00000062963	Ufc1	1110021H02Rik|AA062310|ESTM29	ubiquitin-fold modifier conjugating enzyme 1	protein-coding	0.040000	0.437811	
mm_118067.1	chr13	102905856	102906056	-	1	NA	NA	NA	145701	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.030000	0.467662	
mm_148394.1	chr19	3767311	3767511	+	1	NA	NA	NA	-10	NM_001167889	225888	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0.070000	0.641791	
mm_145599.1	chr18	61045144	61045344	+	1	NA	NA	NA	94	NM_008809	18596	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.020000	0.611940	
mm_145447.1	chr18	60212006	60212206	+	1	NA	NA	NA	29	NM_001033767	240327	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.005000	0.447761	
mm_55412.1	chr6	65022272	65022472	-	1	NA	NA	NA	-20295	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.010000	0.303483	
mm_109970.1	chr12	12937176	12937376	-	1	NA	NA	NA	4560	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.090000	0.616915	
mm_10102.1	chr2	3468501	3468701	+	1	NA	NA	NA	6385	NM_022724	64707	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 homolog 2 (Drosophila)	protein-coding	0.005000	0.462687	
mm_82680.1	chr9	22135560	22135760	-	1	NA	NA	NA	86	NM_001102405	11433	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.010000	0.562189	
mm_56601.1	chr6	108828283	108828483	-	1	NA	NA	NA	-258	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.080000	0.676617	
mm_117591.1	chr13	89742220	89742420	-	1	NA	NA	NA	192	NM_001081249	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.070000	0.597015	
mm_44840.1	chr5	34171616	34171816	-	1	NA	NA	NA	-2190	NM_001289803	272158	Mm.319286	NM_181857	ENSMUSG00000045102	Poln	POL4P	DNA polymerase N	protein-coding	0.010000	0.427861	
mm_158986.1	chr1	132391147	132391347	-	1	NA	NA	NA	139	NM_178874	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.035000	0.492537	-98(TCCTTTAAAAAG,-,0.00),-97(CCTTTAAAAAGA,+,0.00)
mm_45208.1	chr5	52992191	52992391	-	1	NA	NA	NA	1	NR_040413	75954	Mm.258937	NR_040413	ENSMUSG00000106352	5033403H07Rik	-	RIKEN cDNA 5033403H07 gene	ncRNA	0.010000	0.482587	
mm_85572.1	chr9	107280749	107280949	-	1	NA	NA	NA	8547	NM_001316691	102626	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0.005000	0.522388	
mm_26347.1	chr3	142547444	142547644	+	1	NA	NA	NA	-12508	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.000000	0.353234	
mm_55395.1	chr6	60759636	60759836	-	1	NA	NA	NA	69268	NM_001042451	20617	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alphaSYN	synuclein, alpha	protein-coding	0.005000	0.383085	
mm_150480.1	chr19	38930896	38931096	+	1	NA	NA	NA	6	NM_008234	15201	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	0.155000	0.716418	
mm_7572.1	chr1	124845866	124846066	-	1	NA	NA	NA	589761	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.020000	0.492537	
mm_29582.1	chr3	117358271	117358471	-	1	NA	NA	NA	2505	NM_177664	229791	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	0.005000	0.308458	
mm_135039.1	chr16	32877556	32877756	-	1	NA	NA	NA	-128	NM_027226	69823	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	0.125000	0.701493	
mm_15591.1	chr2	160367251	160367451	+	1	NA	NA	NA	-286	NM_010658	16658	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.075000	0.661692	
mm_161843.1	chr18	6061899	6062099	-	1	NA	NA	NA	74099	NM_029277	75415	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0.010000	0.407960	
mm_107138.1	chr12	21373635	21373835	+	1	NA	NA	NA	-103	NM_009615	11491	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	0.090000	0.696517	
mm_29851.1	chr3	129970060	129970260	-	1	NA	NA	NA	46	NM_025779	66815	Mm.31056	NM_025779	ENSMUSG00000027994	Ccdc109b	9030408N13Rik|MCUb	coiled-coil domain containing 109B	protein-coding	0.065000	0.567164	
mm_98973.1	chr11	98685821	98686021	+	1	NA	NA	NA	3367	NM_009439	22123	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0.030000	0.542289	
mm_51881.1	chr6	90571683	90571883	+	1	NA	NA	NA	20935	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.010000	0.621891	
mm_123439.1	chr14	64948809	64949009	-	1	NA	NA	NA	948	NM_177338	219150	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.030000	0.507463	
mm_85046.1	chr9	89704860	89705060	-	1	NA	NA	NA	83	NM_025360	66111	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	0.080000	0.676617	
mm_23574.1	chr3	63299658	63299858	+	1	NA	NA	NA	3663	NM_001289463	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.000000	0.318408	
mm_94944.1	chr11	29718682	29718882	+	1	NA	NA	NA	219	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.025000	0.472637	
mm_89590.1	chr10	95893395	95893595	+	1	NA	NA	NA	-47168	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.040000	0.537313	
mm_63393.1	chr7	127288113	127288313	+	1	NA	NA	NA	-8047	NM_001253873	16408	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.005000	0.517413	
mm_77295.1	chr8	116978853	116979053	-	1	NA	NA	NA	-10	NM_027103	69528	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0.095000	0.681592	
mm_142517.1	chr17	46270699	46270899	-	1	NA	NA	NA	12227	NM_001252475	74094	Mm.284594	NM_028751	ENSMUSG00000012296	Tjap1	0610041D19Rik|AI415281|AW121008|Pilt|Tjp4	tight junction associated protein 1	protein-coding	0.045000	0.597015	
mm_48742.1	chr5	147725913	147726113	-	1	NA	NA	NA	-25	NM_010228	14254	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.070000	0.661692	
mm_25403.1	chr3	107278754	107278954	+	1	NA	NA	NA	-4	NM_026774	68576	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	0.050000	0.527363	
mm_153078.1	chr19	32346953	32347153	-	1	NA	NA	NA	2263	NM_001168525	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.020000	0.477612	
mm_119909.1	chr14	54950497	54950697	+	1	NA	NA	NA	-1455	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.040000	0.621891	
mm_86637.1	chr10	14085936	14086136	+	1	NA	NA	NA	119657	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.015000	0.467662	
mm_169937.1	chr16	62204678	62204878	-	1	NA	NA	NA	581938	NM_178925	106338	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	0.030000	0.507463	-31(GCCTATAAGAAG,-,0.00)
mm_154238.1	chr19	60580902	60581102	-	1	NA	NA	NA	21	NM_001172097	78832	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	0.055000	0.616915	
mm_142557.1	chr17	46639940	46640140	-	1	NA	NA	NA	5104	NM_029091	74764	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0.040000	0.597015	
mm_141500.1	chr17	31632990	31633190	-	1	NA	NA	NA	4115	NM_144855	12411	Mm.206417	NM_144855	ENSMUSG00000024039	Cbs	AI047524|AI303044|HIP4	cystathionine beta-synthase	protein-coding	0.015000	0.522388	
mm_84771.1	chr9	75642152	75642352	-	1	NA	NA	NA	16520	NM_027309	70082	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	0.005000	0.442786	
mm_94695.1	chr11	20112364	20112564	+	1	NA	NA	NA	487	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.080000	0.636816	
mm_10766.1	chr2	24186409	24186609	+	1	NA	NA	NA	33	NM_153511	215257	Mm.249379	NM_153511	ENSMUSG00000044103	Il1f9	Il36g	interleukin 1 family, member 9	protein-coding	0.010000	0.497512	-99(CCCCATAAAAGA,-,0.00)
mm_34594.1	chr4	150198015	150198215	+	1	NA	NA	NA	3020	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.035000	0.567164	
mm_44872.1	chr5	34526063	34526263	-	1	NA	NA	NA	379	NM_011893	24055	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.035000	0.517413	
mm_38211.1	chr4	135876318	135876518	-	1	NA	NA	NA	-2572	NM_026383	52830	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.020000	0.517413	
mm_148571.1	chr19	4859280	4859480	+	1	NA	NA	NA	4251	NM_019861	56464	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	0.025000	0.537313	
mm_49619.1	chr6	30752376	30752576	+	1	NA	NA	NA	11177	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.005000	0.457711	
mm_34254.1	chr4	141301168	141301368	+	1	NA	NA	NA	47	NM_010139	13836	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	0.085000	0.646766	
mm_100301.1	chr11	117849178	117849378	+	1	NA	NA	NA	41	NM_009689	11799	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0.125000	0.706468	
mm_82153.1	chr9	123774963	123775163	+	1	NA	NA	NA	7852	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.005000	0.432836	22(CCTTTAAAACAC,+,0.00)
mm_78720.1	chr9	41579771	41579971	+	1	NA	NA	NA	-1382	NR_015483	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.015000	0.522388	
mm_173227.1	chrX	77456382	77456582	+	1	NA	NA	NA	19454	NR_035475	100316834		NR_035475	ENSMUSG00000088980	Mir669m-2	mmu-mir-669m-2	microRNA 669m-2	ncRNA	0.040000	0.497512	
mm_49069.1	chr6	5725670	5725870	+	1	NA	NA	NA	131	NM_001191026	13426	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0.105000	0.736318	
mm_147046.1	chr18	34931568	34931768	-	1	NA	NA	NA	335	NM_144866	225363	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.095000	0.671642	
mm_8328.1	chr1	149960632	149960832	-	1	NA	NA	NA	558	NM_008869	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.010000	0.368159	
mm_9589.1	chr1	174240091	174240291	-	1	NA	NA	NA	10785	NM_146715	258710	Mm.377647	NM_146715	ENSMUSG00000050788	Olfr419	MOR267-6	olfactory receptor 419	protein-coding	0.015000	0.487562	
mm_100612.1	chr11	121451905	121452105	+	1	NA	NA	NA	56	NM_029878	108903	Mm.23686	NM_029878	ENSMUSG00000039230	Tbcd	2310057L06Rik|A030005L14Rik|mKIAA0988	tubulin-specific chaperone d	protein-coding	0.090000	0.621891	
mm_54009.1	chr6	7983335	7983535	-	1	NA	NA	NA	138211	NM_052993	94192	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.065000	0.547264	
mm_159244.1	chr2	151039256	151039456	-	1	NA	NA	NA	23	NM_026086	67311	Mm.480682	NM_026086	ENSMUSG00000053916	Nanp	1600031M04Rik|Hdhd4	N-acetylneuraminic acid phosphatase	protein-coding	0.115000	0.676617	
mm_14026.1	chr2	122152514	122152714	+	1	NA	NA	NA	4927	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.005000	0.388060	-78(CCTTTAAGAAGG,+,0.00)
mm_78672.1	chr9	40776674	40776874	+	1	NA	NA	NA	-24499	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.010000	0.462687	
mm_154834.1	chrX	18226761	18226961	+	1	NA	NA	NA	64286	NM_001310444	22289	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	0.000000	0.333333	
mm_5621.1	chr1	40107310	40107510	-	1	NA	NA	NA	-21559	NR_037980	100047133	Mm.447052	NR_037980	ENSMUSG00000097899	Gm16894	-	predicted gene, 16894	ncRNA	0.015000	0.432836	
mm_119524.1	chr14	47525995	47526195	+	1	NA	NA	NA	42339	NM_172599	100504663	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	0.010000	0.388060	
mm_109283.1	chr12	109549191	109549391	+	1	NA	NA	NA	3893	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.035000	0.557214	-14(GGGTCTTAAAAC,-,0.00)
mm_61177.1	chr7	60036936	60037136	+	1	NA	NA	NA	-31880	NM_033174	84704	Mm.274995	NM_033174	ENSMUSG00000000948	Snurf	2410045I01Rik|Snrpn	SNRPN upstream reading frame	protein-coding	0.010000	0.417910	
mm_60995.1	chr7	49276600	49276800	+	1	NA	NA	NA	30511	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.005000	0.457711	-65(CTTTTTATACAG,+,0.00)
mm_2930.1	chr1	132298456	132298656	+	1	NA	NA	NA	-70	NM_144810	213417	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0.050000	0.611940	
mm_98499.1	chr11	94951824	94952024	+	1	NA	NA	NA	-15669	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.000000	0.407960	
mm_9736.1	chr1	180245806	180246006	-	1	NA	NA	NA	44	NM_011183	19165	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.015000	0.492537	
mm_106499.1	chr11	120349321	120349521	-	1	NA	NA	NA	743	NR_038126	66838	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0.050000	0.577114	
mm_101907.1	chr11	49244061	49244261	-	1	NA	NA	NA	-30	NM_010794	17308	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.065000	0.711443	
mm_31380.1	chr4	47479937	47480137	+	1	NA	NA	NA	5376	NM_024171	66212	Mm.20188	NM_024171	ENSMUSG00000053317	Sec61b	1190006C12Rik|AI326121|AW122942	Sec61 beta subunit	protein-coding	0.005000	0.248756	
mm_1639.1	chr1	74541341	74541541	+	1	NA	NA	NA	-1448	NM_001081456	18802	Mm.290731	NM_148937	ENSMUSG00000026173	Plcd4	4921507K24Rik	phospholipase C, delta 4	protein-coding	0.025000	0.527363	
mm_132792.1	chr16	45093550	45093750	+	1	NA	NA	NA	-403	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.010000	0.452736	
mm_149024.1	chr19	8757331	8757531	+	1	NA	NA	NA	314	NM_001276704	53319	Mm.7271	NM_016813	ENSMUSG00000010097	Nxf1	Mex67|Mvb1|Tap	nuclear RNA export factor 1	protein-coding	0.095000	0.691542	
mm_138301.1	chr17	34632209	34632409	+	1	NA	NA	NA	2623	NM_030890	260297	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31	proline-rich transmembrane protein 1	protein-coding	0.095000	0.641791	
mm_58493.1	chr7	3703902	3704102	+	1	NA	NA	NA	-39	NM_029767	76846	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	0.090000	0.557214	86(CGCCTTTTAGGG,-,0.00),88(CCTTTTAGGGGT,+,0.00)
mm_116344.1	chr13	38528301	38528501	-	1	NA	NA	NA	83	NM_145367	105245	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	0.140000	0.805970	
mm_34074.1	chr4	138457583	138457783	+	1	NA	NA	NA	2535	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.000000	0.368159	-21(CTTTTTCTAGCC,+,0.00),55(TCTTTAATGGAC,+,0.00)
mm_122568.1	chr14	50807463	50807663	-	1	NA	NA	NA	208	NR_002142	85029		NR_002142	ENSMUSG00000092837	Rpph1	Gm24821|H1RNA|Rmrp5|Rpr	ribonuclease P RNA component H1	ncRNA	0.070000	0.661692	
mm_40929.1	chr5	76331091	76331291	+	1	NA	NA	NA	-35	NM_023508	79455	Mm.143764	NM_023508	ENSMUSG00000029235	Pdcl2	1700010B22Rik|1700016K07Rik|Mgcphlp|Tphlp	phosducin-like 2	protein-coding	0.030000	0.542289	
mm_140012.1	chr17	73203715	73203915	+	1	NA	NA	NA	95830	NM_001177967	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.015000	0.507463	
mm_106074.1	chr11	116173145	116173345	-	1	NA	NA	NA	-5067	NM_172571	217335	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.030000	0.432836	
mm_76963.1	chr8	106136734	106136934	-	1	NA	NA	NA	140	NM_176838	77411	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	0.130000	0.741294	
mm_163221.1	chr11	101986857	101987057	-	1	NA	NA	NA	-99	NM_029287	75437	Mm.108632	NM_029287	ENSMUSG00000010841	1700006E09Rik	-	RIKEN cDNA 1700006E09 gene	protein-coding	0.020000	0.427861	
mm_111317.1	chr12	85973582	85973782	-	1	NA	NA	NA	105359	NM_009368	21809	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.005000	0.487562	
mm_133168.1	chr16	71249710	71249910	+	1	NA	NA	NA	-94	NR_040576	78221	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA	0.025000	0.542289	
mm_98796.1	chr11	96987977	96988177	+	1	NA	NA	NA	-10389	NM_001080964	78912	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.045000	0.537313	
mm_125393.1	chr15	41446729	41446929	+	1	NA	NA	NA	-653	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.020000	0.462687	-33(TTGTATTTAAGG,-,0.00)
mm_68887.1	chr7	126447926	126448126	-	1	NA	NA	NA	15047	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.010000	0.567164	
mm_59894.1	chr7	30307156	30307356	+	1	NA	NA	NA	-1497	NM_198027	233065	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	0.005000	0.472637	
mm_25890.1	chr3	131110241	131110441	+	1	NA	NA	NA	44	NM_001276402	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.110000	0.696517	
mm_37799.1	chr4	130525092	130525292	-	1	NA	NA	NA	48844	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.005000	0.522388	
mm_29057.1	chr3	103778043	103778243	-	1	NA	NA	NA	13132	NM_001301306	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.015000	0.517413	
mm_146546.1	chr18	6135848	6136048	-	1	NA	NA	NA	150	NM_029277	75415	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0.100000	0.691542	
mm_124710.1	chr15	6569407	6569607	+	1	NA	NA	NA	-10340	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.015000	0.512438	
mm_62169.1	chr7	97299178	97299378	+	1	NA	NA	NA	26686	NM_001177412	244144	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.015000	0.542289	
mm_76586.1	chr8	89042329	89042529	-	1	NA	NA	NA	1733	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.105000	0.592040	
mm_126773.1	chr15	86074701	86074901	+	1	NA	NA	NA	16074	NM_001205353	223752	Mm.24442	NM_172611	ENSMUSG00000035900	Gramd4	9930016O13	GRAM domain containing 4	protein-coding	0.040000	0.641791	
mm_27018.1	chr3	26027305	26027505	-	1	NA	NA	NA	125902	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.407960	
mm_92628.1	chr10	80322941	80323141	-	1	NA	NA	NA	-2493	NM_025521	66374	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.095000	0.671642	
mm_126672.1	chr15	84445959	84446159	+	1	NA	NA	NA	551	NM_001347543	72301	Mm.275387	NM_001163145	ENSMUSG00000062760	1810041L15Rik	Kiaa1644	RIKEN cDNA 1810041L15 gene	protein-coding	0.095000	0.661692	
mm_51293.1	chr6	72305872	72306072	+	1	NA	NA	NA	1362	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.020000	0.522388	15(ACCTATATAAGT,-,0.00)
mm_10835.1	chr2	24563025	24563225	+	1	NA	NA	NA	-87526	NM_011040	18510	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0.005000	0.542289	
mm_128881.1	chr15	73096830	73097030	-	1	NA	NA	NA	6518	NM_053068	93696	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0.000000	0.348259	
mm_143256.1	chr17	65580546	65580746	-	1	NA	NA	NA	32909	NM_013933	30960	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.025000	0.402985	
mm_97416.1	chr11	77982734	77982934	+	1	NA	NA	NA	18	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0.135000	0.716418	
mm_28739.1	chr3	95737591	95737791	-	1	NA	NA	NA	1878	NM_007899	13601	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	0.010000	0.606965	
mm_15789.1	chr2	164425644	164425844	+	1	NA	NA	NA	17444	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.005000	0.437811	
mm_117559.1	chr13	85215983	85216183	-	1	NA	NA	NA	26698	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0.015000	0.393035	
mm_167686.1	chr9	85327178	85327378	-	1	NA	NA	NA	-128	NM_001160379	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.135000	0.696517	-53(CGGTATAAAAAA,-,0.00)
mm_101567.1	chr11	34207490	34207690	-	1	NA	NA	NA	499	NM_023907	14233	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	0.045000	0.552239	
mm_101065.1	chr11	9873712	9873912	-	1	NA	NA	NA	681870	NM_178259	268379	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.000000	0.383085	
mm_93151.1	chr10	93041933	93042133	-	1	NA	NA	NA	39563	NM_001347060	380654	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	0.010000	0.427861	
mm_38992.1	chr4	151123708	151123908	-	1	NA	NA	NA	34238	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	0.005000	0.343284	
mm_26207.1	chr3	138550566	138550766	+	1	NA	NA	NA	23398	NM_001313980	13684	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.025000	0.417910	-27(GCTTCTAAAAGG,-,0.00)
mm_140619.1	chr17	11385306	11385506	-	1	NA	NA	NA	497783	NR_045808	52027	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	0.020000	0.492537	
mm_16083.1	chr2	168590359	168590559	+	1	NA	NA	NA	-94	NM_001136073	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.075000	0.701493	
mm_21567.1	chr2	164221541	164221741	-	1	NA	NA	NA	22	NM_138685	192201	Mm.330764	NM_138685	ENSMUSG00000018211	Wfdc15b	9230106L14Rik|SWAM1|Wfdc15	WAP four-disulfide core domain 15B	protein-coding	0.020000	0.437811	
mm_144308.1	chr18	12523906	12524106	+	1	NA	NA	NA	19807	NM_001347461	16774	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0.020000	0.527363	
mm_153261.1	chr19	36919539	36919739	-	1	NA	NA	NA	-40	NM_028263	72514	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0.025000	0.472637	
mm_41290.1	chr5	90463885	90464085	+	1	NA	NA	NA	3115	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.020000	0.427861	
mm_30557.1	chr4	3750599	3750799	+	1	NA	NA	NA	35735	NR_028126	70720	Mm.445696	NR_028126		6330407A03Rik	-	RIKEN cDNA 6330407A03 gene	ncRNA	0.005000	0.383085	
mm_92310.1	chr10	75273107	75273307	-	1	NA	NA	NA	-43670	NM_009630	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.020000	0.477612	
mm_124758.1	chr15	6644727	6644927	+	1	NA	NA	NA	-63554	NM_030168	78757	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.025000	0.427861	
mm_38979.1	chr4	150915087	150915287	-	1	NA	NA	NA	-4968	NM_011612	21942	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.015000	0.472637	
mm_70798.1	chr8	22859441	22859641	+	1	NA	NA	NA	2	NM_001081149	244349	Mm.182776	NM_001081149	ENSMUSG00000031540	Kat6a	1500036M03|9930021N24Rik|MOZ|Myst3|Zfp220	K(lysine) acetyltransferase 6A	protein-coding	0.095000	0.731343	
mm_31543.1	chr4	55478093	55478293	+	1	NA	NA	NA	54282	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.015000	0.552239	
mm_25445.1	chr3	108283969	108284169	+	1	NA	NA	NA	5	NM_019972	20661	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0.125000	0.746269	
mm_60176.1	chr7	41622702	41622902	+	1	NA	NA	NA	-10729	NM_023363	67607	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	0.010000	0.283582	
mm_86781.1	chr10	20170729	20170929	+	1	NA	NA	NA	21909	NM_001198635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.045000	0.537313	47(CCTTTAATAGAG,+,0.00)
mm_6651.1	chr1	79761689	79761889	-	1	NA	NA	NA	-20	NM_027057	69368	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	0.125000	0.671642	
mm_162591.1	chr1	181232279	181232479	-	1	NA	NA	NA	-20401	NM_145514	226757	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.005000	0.577114	
mm_1079.1	chr1	59482783	59482983	+	1	NA	NA	NA	736	NM_008057	14369	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.150000	0.766169	
mm_105145.1	chr11	101460360	101460560	-	1	NA	NA	NA	5739	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.035000	0.572139	
mm_1232.1	chr1	62770832	62771032	+	1	NA	NA	NA	23800	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.010000	0.487562	12(CTTTTTAGAGAT,+,0.00)
mm_74152.1	chr8	123373754	123373954	+	1	NA	NA	NA	143	NM_001286363	66855	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0.120000	0.696517	
mm_94691.1	chr11	19954087	19954287	+	1	NA	NA	NA	29745	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.020000	0.437811	
mm_46924.1	chr5	114669960	114670160	-	1	NA	NA	NA	-11639	NM_022017	63873	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.030000	0.517413	
mm_141550.1	chr17	32166660	32166860	-	1	NA	NA	NA	92	NM_008716	18131	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0.090000	0.771144	
mm_173137.1	chrX	20920554	20920754	-	1	NA	NA	NA	264	NM_001110780	20964	Mm.439844	NM_013680	ENSMUSG00000037217	Syn1	Syn-1|Syn1-S	synapsin I	protein-coding	0.085000	0.711443	
mm_166333.1	chr5	114273696	114273896	-	1	NA	NA	NA	-35	NM_148935	116810	Mm.17709	NM_148935	ENSMUSG00000042002	Foxn4	-	forkhead box N4	protein-coding	0.065000	0.621891	
mm_69392.1	chr7	131410408	131410608	-	1	NA	NA	NA	-30	NM_175115	67143	Mm.334273	NM_175115	ENSMUSG00000040167	Ikzf5	2610034F18Rik|PEGASUS|Zfpn1a5	IKAROS family zinc finger 5	protein-coding	0.095000	0.641791	
mm_5449.1	chr1	36244054	36244254	-	1	NA	NA	NA	148	NM_198899	320011	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	0.135000	0.721393	
mm_28923.1	chr3	98858107	98858307	-	1	NA	NA	NA	1587	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.010000	0.402985	
mm_30601.1	chr4	6386950	6387150	+	1	NA	NA	NA	21370	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.000000	0.238806	
mm_85718.1	chr9	108263826	108264026	-	1	NA	NA	NA	32	NM_001276485	13138	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	0.140000	0.746269	
mm_104484.1	chr11	95587599	95587799	-	1	NA	NA	NA	-1	NM_033217	18053	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	0.100000	0.756219	
mm_121722.1	chr14	16575252	16575452	-	1	NA	NA	NA	124	NM_011243	218772	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	0.105000	0.706468	
mm_2941.1	chr1	132316028	132316228	+	1	NA	NA	NA	3	NM_001195025	74137	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.115000	0.656716	
mm_110363.1	chr12	40083350	40083550	-	1	NA	NA	NA	-45463	NM_001039515	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.010000	0.398010	
mm_123293.1	chr14	61556690	61556890	-	1	NA	NA	NA	96	NM_025697	66674	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0.105000	0.751244	
mm_13208.1	chr2	93642221	93642421	+	1	NA	NA	NA	-113	NM_007442	11695	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.015000	0.502488	
mm_44225.1	chr5	4832610	4832810	-	1	NA	NA	NA	-74494	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.015000	0.432836	
mm_57315.1	chr6	124727181	124727381	-	1	NA	NA	NA	5873	NM_013545	15170	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.015000	0.502488	
mm_40097.1	chr5	34573616	34573816	+	1	NA	NA	NA	52	NM_001331086	11518	Mm.289106	NM_013457	ENSMUSG00000029106	Add1	AI256389	adducin 1 (alpha)	protein-coding	0.080000	0.676617	
mm_140244.1	chr17	84181129	84181329	+	1	NA	NA	NA	6718	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.010000	0.542289	
mm_30922.1	chr4	32722947	32723147	+	1	NA	NA	NA	65928	NM_001081392	100019	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	0.020000	0.507463	
mm_155121.1	chrX	48871244	48871444	+	1	NA	NA	NA	6369	NM_001085499	209005	Mm.336054	NM_001085499	ENSMUSG00000079606	Gm595	-	predicted gene 595	protein-coding	0.000000	0.348259	
mm_106632.1	chr11	120903261	120903461	-	1	NA	NA	NA	29511	NM_027745	71276	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.025000	0.462687	
mm_8640.1	chr1	156428876	156429076	-	1	NA	NA	NA	-8061	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.005000	0.507463	
mm_60244.1	chr7	43768829	43769029	+	1	NA	NA	NA	-171	NM_027097	69511	Mm.20163	NM_027097	ENSMUSG00000044430	Klk12	2310008B01Rik|AI324852|KLK-L5	kallikrein related-peptidase 12	protein-coding	0.015000	0.552239	
mm_108214.1	chr12	77038443	77038643	+	1	NA	NA	NA	-76295	NM_001146176	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.005000	0.363184	
mm_172902.1	chr9	58555221	58555421	-	1	NA	NA	NA	-14381	NM_133983	102657	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.055000	0.646766	
mm_133287.1	chr16	77465988	77466188	+	1	NA	NA	NA	-132848	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.005000	0.427861	
mm_45214.1	chr5	52994114	52994314	-	1	NA	NA	NA	-1922	NR_040413	75954	Mm.258937	NR_040413	ENSMUSG00000106352	5033403H07Rik	-	RIKEN cDNA 5033403H07 gene	ncRNA	0.030000	0.522388	
mm_123695.1	chr14	69705403	69705603	-	1	NA	NA	NA	1990	NM_001301652	71843	Mm.27738	NM_001146012	ENSMUSG00000034194	R3hcc1	1700020M16Rik|AA407796	R3H domain and coiled-coil containing 1	protein-coding	0.025000	0.592040	
mm_66137.1	chr7	31111053	31111253	-	1	NA	NA	NA	-156	NM_001276269	15451	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0.005000	0.477612	
mm_107479.1	chr12	37880742	37880942	+	1	NA	NA	NA	137	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	0.035000	0.587065	
mm_87137.1	chr10	34298966	34299166	+	1	NA	NA	NA	1645	NM_030203	72480	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	0.015000	0.407960	
mm_63738.1	chr7	130900441	130900641	+	1	NA	NA	NA	-7727	NR_106028	102466219		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0.010000	0.348259	
mm_162587.1	chr1	180849087	180849287	+	1	NA	NA	NA	-1964	NM_145943	208768	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.000000	0.417910	
mm_132396.1	chr16	35000887	35001087	+	1	NA	NA	NA	-21434	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.030000	0.601990	
mm_19807.1	chr2	110314121	110314321	-	1	NA	NA	NA	-8496	NM_130452	170442	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	0.010000	0.472637	
mm_14981.1	chr2	152143455	152143655	+	1	NA	NA	NA	-54	NM_009328	21407	Mm.3881	NM_009328	ENSMUSG00000068079	Tcf15	Meso1|bHLH-EC2	transcription factor 15	protein-coding	0.160000	0.771144	
mm_57700.1	chr6	128526590	128526790	-	1	NA	NA	NA	30	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.015000	0.487562	
mm_43695.1	chr5	139161784	139161984	+	1	NA	NA	NA	11661	NM_001081265	433956	Mm.5547	NM_001081265	ENSMUSG00000025857	Dnaaf5	BC053401|C76907|Heatr2	dynein, axonemal assembly factor 5	protein-coding	0.035000	0.606965	
mm_46866.1	chr5	113824233	113824433	-	1	NA	NA	NA	6168	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.000000	0.557214	
mm_132468.1	chr16	36693886	36694086	+	1	NA	NA	NA	8	NM_001285791	106347	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.075000	0.696517	
mm_163431.1	chr12	84177333	84177533	-	1	NA	NA	NA	16582	NM_001163502	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.010000	0.567164	
mm_66062.1	chr7	30752074	30752274	-	1	NA	NA	NA	703	NM_001083903	282619	Mm.250717	NM_172205	ENSMUSG00000046056	Sbsn	1110005D19Rik|AI747508	suprabasin	protein-coding	0.000000	0.512438	
mm_13969.1	chr2	121431555	121431755	+	1	NA	NA	NA	10946	NM_145973	269344	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	0.010000	0.363184	-77(GCTTTAAGAGAA,+,0.00)
mm_159956.1	chr6	87730752	87730952	+	1	NA	NA	NA	-17	NM_001159697	58229	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.105000	0.706468	
mm_78423.1	chr9	31163474	31163674	+	1	NA	NA	NA	-31775	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.005000	0.427861	
mm_30079.1	chr3	138090229	138090429	-	1	NA	NA	NA	-22941	NR_037975	329763	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA	0.005000	0.412935	-32(CCCTTTTAAAAA,-,0.00),-31(CCTTTTAAAAAA,+,0.00)
mm_82597.1	chr9	21291043	21291243	-	1	NA	NA	NA	66	NM_009878	12581	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	protein-coding	0.085000	0.706468	
mm_138309.1	chr17	34647051	34647251	+	1	NA	NA	NA	5	NM_017406	12915	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	0.075000	0.641791	
mm_118805.1	chr14	25378149	25378349	+	1	NA	NA	NA	-80936	NM_001310666	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.075000	0.691542	
mm_86525.1	chr10	7802876	7803076	+	1	NA	NA	NA	10082	NM_026141	67418	Mm.38927	NM_026141	ENSMUSG00000015757	Ppil4	3732410E19Rik|3830425H19Rik|AI788954|AW146233|PPIase	peptidylprolyl isomerase (cyclophilin)-like 4	protein-coding	0.000000	0.398010	
mm_39154.1	chr4	155414693	155414893	-	1	NA	NA	NA	5603	NM_001166029	544678	Mm.472798	NM_177674	ENSMUSG00000078490	Cfap74	2010015L04Rik|A530045M11	cilia and flagella associated protein 74	protein-coding	0.020000	0.457711	
mm_111355.1	chr12	86990376	86990576	-	1	NA	NA	NA	-1800	NM_001080943	238331	Mm.185890	NM_001080943	ENSMUSG00000048483	Zdhhc22	Gm262	zinc finger, DHHC-type containing 22	protein-coding	0.075000	0.676617	
mm_38394.1	chr4	138819211	138819411	-	1	NA	NA	NA	-54	NM_011110	18784	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	0.015000	0.587065	
mm_69104.1	chr7	127020952	127021152	-	1	NA	NA	NA	159	NM_001102563	69017	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.060000	0.656716	
mm_32984.1	chr4	120136199	120136399	+	1	NA	NA	NA	-24907	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.005000	0.537313	
mm_13246.1	chr2	98662851	98663051	+	1	NA	NA	NA	1195294	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.030000	0.333333	
mm_101818.1	chr11	46447165	46447365	-	1	NA	NA	NA	-7666	NM_134250	171285	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0.010000	0.412935	
mm_124686.1	chr15	6435185	6435385	+	1	NA	NA	NA	-10048	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.015000	0.557214	
mm_173084.1	chrX	142622782	142622982	-	1	NA	NA	NA	-58518	NM_177592	209497	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	0.040000	0.567164	
mm_22096.1	chr2	168955461	168955661	-	1	NA	NA	NA	26	NM_009564	22722	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	0.055000	0.661692	
mm_75371.1	chr8	45310150	45310350	-	1	NA	NA	NA	-15415	NM_008455	16621	Mm.482691	NM_008455	ENSMUSG00000109764	Klkb1	APS|Kal-3|Kal3|Klk3|PSA	kallikrein B, plasma 1	protein-coding	0.020000	0.467662	
mm_128269.1	chr15	36793437	36793637	-	1	NA	NA	NA	1001	NM_011740	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.105000	0.711443	
mm_164287.1	chr15	103503130	103503330	+	1	NA	NA	NA	196	NM_008800	18574	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.105000	0.751244	
mm_66422.1	chr7	44534206	44534406	-	1	NA	NA	NA	-2235	NM_019866	272382	Mm.8012	NM_019866	ENSMUSG00000008193	Spib	Spi-B	Spi-B transcription factor (Spi-1/PU.1 related)	protein-coding	0.020000	0.606965	
mm_31486.1	chr4	52596192	52596392	+	1	NA	NA	NA	18	NM_026652	68274	Mm.85045	NM_026652	ENSMUSG00000028314	Toporsl	4930547C10Rik	topoisomerase I binding, arginine/serine-rich like	protein-coding	0.010000	0.378109	
mm_167166.1	chr7	136268249	136268449	+	1	NA	NA	NA	25	NR_102277	77383	Mm.227745	NR_102277	ENSMUSG00000110027	C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA	0.000000	0.562189	
mm_86370.1	chr9	123797867	123798067	-	1	NA	NA	NA	-8510	NM_030712	80901	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.010000	0.502488	
mm_43730.1	chr5	139723197	139723397	+	1	NA	NA	NA	13036	NM_174850	231830	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.030000	0.582090	
mm_116413.1	chr13	41487190	41487390	-	1	NA	NA	NA	70	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.025000	0.562189	
mm_171320.1	chr3	96260603	96260803	-	1	NA	NA	NA	2614	NM_033596	97122	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0.010000	0.417910	
mm_147704.1	chr18	60810282	60810482	-	1	NA	NA	NA	-1694	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.025000	0.542289	
mm_31162.1	chr4	43442464	43442664	+	1	NA	NA	NA	287	NM_011571	21754	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.055000	0.641791	
mm_121379.1	chr14	118854598	118854798	+	1	NA	NA	NA	-252	NM_021386	58187	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0.065000	0.661692	
mm_77862.1	chr9	5323616	5323816	+	1	NA	NA	NA	14867	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.015000	0.437811	
mm_49966.1	chr6	40765871	40766071	+	1	NA	NA	NA	121523	NM_139296	194357	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0.005000	0.412935	
mm_47605.1	chr5	125058438	125058638	-	1	NA	NA	NA	55063	NM_028443	73121	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.060000	0.701493	
mm_75740.1	chr8	69716781	69716981	-	1	NA	NA	NA	21	NM_001039967	66869	Mm.334581	NM_181274	ENSMUSG00000054648	Zfp869	1200003I07Rik	zinc finger protein 869	protein-coding	0.070000	0.592040	
mm_94641.1	chr11	16914509	16914709	+	1	NA	NA	NA	36673	NR_110421	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.000000	0.283582	
mm_35251.1	chr4	19877683	19877883	-	1	NA	NA	NA	44783	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.020000	0.402985	
mm_2511.1	chr1	106230631	106230831	+	1	NA	NA	NA	58862	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.000000	0.393035	
mm_101437.1	chr11	30114765	30114965	-	1	NA	NA	NA	83392	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.020000	0.597015	
mm_2805.1	chr1	130852076	130852276	+	1	NA	NA	NA	-13601	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.005000	0.417910	
mm_16625.1	chr2	5676888	5677088	-	1	NA	NA	NA	-942	NM_001290376	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.030000	0.467662	-7(TTCTTTATATGG,-,0.00),-5(CTTTATATGGGG,+,0.00)
mm_150842.1	chr19	44956898	44957098	+	1	NA	NA	NA	25879	NM_001081225	226151	Mm.212609	NM_172638	ENSMUSG00000036097	Fam178a	3632432H19|6030443O07Rik|AU014917|Slf2	family with sequence similarity 178, member A	protein-coding	0.010000	0.422886	29(TCTTATAAAGGA,+,0.00)
mm_166812.1	chr7	16204150	16204350	-	1	NA	NA	NA	17743	NM_001285931	71723	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	0.010000	0.572139	
mm_157209.1	chrX	12761918	12762118	-	1	NA	NA	NA	-45	NM_001048208	26896	Mm.17616	NM_012005	ENSMUSG00000064127	Med14	9930001L01Rik|AU041628|Crsp2|ENSMUSG00000073278|Gm641|ORF1|Trap170	mediator complex subunit 14	protein-coding	0.105000	0.691542	
mm_143032.1	chr17	56609834	56610034	-	1	NA	NA	NA	-163	NM_153152	224904	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0.075000	0.582090	
mm_140388.1	chr17	87282815	87283015	+	1	NA	NA	NA	29	NM_028639	225049	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.080000	0.721393	
mm_162720.1	chr10	37074996	37075196	+	1	NA	NA	NA	63830	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.005000	0.472637	
mm_50302.1	chr6	47636492	47636692	+	1	NA	NA	NA	18502	NR_002841	19799		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.005000	0.502488	-29(ACCCATAAAGGG,-,0.00)
mm_116315.1	chr13	37255302	37255502	-	1	NA	NA	NA	-89943	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.005000	0.537313	
mm_163328.1	chr12	8480210	8480410	-	1	NA	NA	NA	19675	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.015000	0.552239	
mm_79144.1	chr9	47697321	47697521	+	1	NA	NA	NA	120787	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.010000	0.343284	
mm_49696.1	chr6	33973172	33973372	+	1	NA	NA	NA	-56176	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.010000	0.522388	
mm_46109.1	chr5	92348779	92348979	-	1	NA	NA	NA	10	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.040000	0.557214	
mm_100940.1	chr11	6528299	6528499	-	1	NA	NA	NA	361	NR_045893	100041286	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974|OTTMUSG00000005115	small nucleolar RNA host gene 15	ncRNA	0.045000	0.547264	
mm_122861.1	chr14	54907063	54907263	-	1	NA	NA	NA	5969	NM_021551	59049	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	0.035000	0.616915	
mm_35601.1	chr4	43040062	43040262	-	1	NA	NA	NA	139	NM_001253353	230088	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0.065000	0.691542	
mm_20192.1	chr2	122702566	122702766	-	1	NA	NA	NA	-3	NM_001290993	22785	Mm.27801	NM_011774	ENSMUSG00000005802	Slc30a4	Znt4|lm|znT-4	solute carrier family 30 (zinc transporter), member 4	protein-coding	0.165000	0.810945	
mm_73236.1	chr8	104142654	104142854	+	1	NA	NA	NA	-27759	NM_001141924	65115	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	0.095000	0.656716	
mm_147404.1	chr18	44641316	44641516	-	1	NA	NA	NA	-20249	NR_026853	626275	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	0.010000	0.393035	
mm_142015.1	chr17	35200425	35200625	-	1	NA	NA	NA	1482	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.025000	0.582090	
mm_70934.1	chr8	25849526	25849726	+	1	NA	NA	NA	3	NM_008432	16532	Mm.289679	NM_008432	ENSMUSG00000031576	Kcnu1	Kcnma3|Slo3|mSlo3	potassium channel, subfamily U, member 1	protein-coding	0.020000	0.452736	
mm_130990.1	chr15	103393565	103393765	-	1	NA	NA	NA	-26874	NM_001314041	16402	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0.000000	0.353234	-86(TTTTTTATAGAG,+,0.00),-34(GAACATAAAAGG,-,0.00)
mm_70417.1	chr8	11458433	11458633	+	1	NA	NA	NA	-19396	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.015000	0.542289	70(TTCTTGAAAAGG,-,0.00)
mm_94078.1	chr10	128455472	128455672	-	1	NA	NA	NA	-3108	NR_106183	102465894		NR_106183	ENSMUSG00000098957	Mir8105	Gm27346|mmu-mir-8105	microRNA 8105	ncRNA	0.010000	0.378109	-86(TCTTTTCAAGGC,+,0.00)
mm_113315.1	chr13	30764421	30764621	+	1	NA	NA	NA	15288	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.015000	0.452736	
mm_169267.1	chr1	38509420	38509620	+	1	NA	NA	NA	117724	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.035000	0.567164	
mm_87651.1	chr10	58422519	58422719	+	1	NA	NA	NA	-24233	NM_011240	19386	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0.015000	0.437811	
mm_86404.1	chr9	123986574	123986774	-	1	NA	NA	NA	-8266	NM_007718	12770	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0.015000	0.447761	
mm_81945.1	chr9	120492532	120492732	+	1	NA	NA	NA	26	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.185000	0.751244	
mm_70543.1	chr8	13042684	13042884	+	1	NA	NA	NA	5476	NM_001242368	14058	Mm.262589	NM_007972	ENSMUSG00000031444	F10	Cf10|fX	coagulation factor X	protein-coding	0.010000	0.427861	-4(GCATTTATATCC,+,0.00)
mm_41861.1	chr5	104440500	104440700	+	1	NA	NA	NA	4408	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.005000	0.373134	
mm_172919.1	chr9	67049170	67049370	-	1	NA	NA	NA	-57	NM_001164251	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.075000	0.646766	
mm_101447.1	chr11	30197831	30198031	-	1	NA	NA	NA	326	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.050000	0.606965	
mm_79888.1	chr9	65294273	65294473	+	1	NA	NA	NA	113	NM_011802	270166	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0.095000	0.681592	
mm_40527.1	chr5	57919782	57919982	+	1	NA	NA	NA	201801	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.000000	0.422886	
mm_104066.1	chr11	86585035	86585235	-	1	NA	NA	NA	-977	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.015000	0.407960	
mm_114823.1	chr13	91807611	91807811	+	1	NA	NA	NA	-15	NM_145453	69085	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	0.060000	0.592040	
mm_66913.1	chr7	60004983	60005183	-	1	NA	NA	NA	73	NM_013670	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding	0.055000	0.557214	
mm_8837.1	chr1	162675111	162675311	-	1	NA	NA	NA	-16992	NM_001177581	100038657	Mm.416999	NM_001177581	ENSMUSG00000091060	7420461P10Rik	ENSMUSG00000073516	RIKEN cDNA 7420461P10 gene	protein-coding	0.000000	0.338308	
mm_122899.1	chr14	54952224	54952424	-	1	NA	NA	NA	-3182	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.025000	0.552239	
mm_109856.1	chr12	4768979	4769179	-	1	NA	NA	NA	188	NM_175431	207921	Mm.184898	NM_175431	ENSMUSG00000050545	Fam228b	A830093I24Rik	family with sequence similarity 228, member B	protein-coding	0.130000	0.726368	
mm_116932.1	chr13	55831146	55831346	-	1	NA	NA	NA	179	NM_011097	18740	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.085000	0.716418	
mm_22188.1	chr2	173265837	173266037	-	1	NA	NA	NA	10596	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.015000	0.472637	
mm_102225.1	chr11	54909953	54910153	-	1	NA	NA	NA	7199	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.010000	0.552239	
mm_48174.1	chr5	137288562	137288762	-	1	NA	NA	NA	408	NM_001290010	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.060000	0.656716	
mm_86922.1	chr10	23851469	23851669	+	1	NA	NA	NA	107	NM_011979	26464	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	0.010000	0.398010	
mm_55175.1	chr6	51990119	51990319	-	1	NA	NA	NA	22330	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.005000	0.278607	
mm_115025.1	chr13	99100609	99100809	+	1	NA	NA	NA	-12788	NR_045495	69603	Mm.390632	NR_045495	ENSMUSG00000100410	2310020H05Rik	-	RIKEN cDNA 2310020H05 gene	ncRNA	0.040000	0.512438	
mm_99271.1	chr11	101253639	101253839	+	1	NA	NA	NA	32	NM_026776	28084	Mm.301020	NM_026776	ENSMUSG00000078656	Vps25	1110020N13Rik|AW107467|D11Wsu68e	vacuolar protein sorting 25	protein-coding	0.080000	0.621891	
mm_109176.1	chr12	108410790	108410990	+	1	NA	NA	NA	257	NM_001286347	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.020000	0.606965	
mm_74387.1	chr8	128724196	128724396	+	1	NA	NA	NA	38642	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.015000	0.477612	
mm_113316.1	chr13	30764467	30764667	+	1	NA	NA	NA	15334	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.015000	0.487562	
mm_155637.1	chrX	85202525	85202725	+	1	NA	NA	NA	-47052	NM_028046	71996	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	0.010000	0.323383	
mm_166492.1	chr5	150129684	150129884	+	1	NA	NA	NA	111109	NM_001289566	140498	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	0.005000	0.507463	
mm_91932.1	chr10	60687122	60687322	-	1	NA	NA	NA	9268	NM_001252635	22295	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0.130000	0.711443	
mm_126211.1	chr15	78899665	78899865	+	1	NA	NA	NA	-3	NR_133564	20401	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	0.095000	0.731343	
mm_172326.1	chr7	10699296	10699496	-	1	NA	NA	NA	11603	NM_172481	210045	Mm.95244	NM_172481	ENSMUSG00000034087	Nlrp4b	AU022726|E330024M09|Nalp-gamma|Nalp4b	NLR family, pyrin domain containing 4B	protein-coding	0.010000	0.388060	
mm_32936.1	chr4	119255399	119255599	+	1	NA	NA	NA	30	NM_001038590	242653	Mm.130701	NM_153105	ENSMUSG00000066058	Cldn19	-	claudin 19	protein-coding	0.015000	0.606965	
mm_172340.1	chr7	110518370	110518570	+	1	NA	NA	NA	96450	NM_177324	319934	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.035000	0.507463	
mm_25517.1	chr3	114030389	114030589	+	1	NA	NA	NA	-51	NM_007729	12814	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding	0.040000	0.641791	
mm_81471.1	chr9	109931447	109931647	+	1	NA	NA	NA	-227	NM_001205331	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.130000	0.726368	
mm_69761.1	chr7	141009618	141009818	-	1	NA	NA	NA	1026	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.030000	0.492537	
mm_17724.1	chr2	32423918	32424118	-	1	NA	NA	NA	48	NM_001290558	227731	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.035000	0.532338	
mm_127883.1	chr15	8643127	8643327	-	1	NA	NA	NA	67580	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.025000	0.338308	
mm_6279.1	chr1	69683181	69683381	-	1	NA	NA	NA	2679	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.025000	0.427861	
mm_27064.1	chr3	27711141	27711341	-	1	NA	NA	NA	-802	NM_173182	72007	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.120000	0.721393	
mm_139653.1	chr17	57401088	57401288	+	1	NA	NA	NA	42502	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.437811	
mm_32744.1	chr4	116649728	116649928	+	1	NA	NA	NA	1846	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.010000	0.482587	
mm_123010.1	chr14	55063933	55064133	-	1	NA	NA	NA	-9058	NR_004444	432855	Mm.490799	NR_004444	ENSMUSG00000093452	Zfhx2os	Zfhx2as	zinc finger homeobox 2, opposite strand	ncRNA	0.050000	0.611940	
mm_164387.1	chr16	32117932	32118132	-	1	NA	NA	NA	18230	NM_025892	66994	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0.005000	0.537313	
mm_167132.1	chr7	126847633	126847833	+	1	NA	NA	NA	180	NM_010069	13446	Mm.266301	NM_010069	ENSMUSG00000052301	Doc2a	-	double C2, alpha	protein-coding	0.120000	0.741294	
mm_115974.1	chr13	24155110	24155310	-	1	NA	NA	NA	125580	NM_001311122	68732	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0.015000	0.472637	
mm_133590.1	chr16	91425244	91425444	+	1	NA	NA	NA	19109	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.005000	0.502488	-22(CACCATATAAAC,-,0.00),-20(CCATATAAACCA,+,0.00)
mm_161868.1	chr18	36196922	36197122	-	1	NA	NA	NA	138	NM_001167891	100042150	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0.055000	0.656716	
mm_100181.1	chr11	116624346	116624546	+	1	NA	NA	NA	-194	NM_001167680	217344	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.055000	0.562189	-33(CCACTTATGGCC,+,0.00)
mm_67764.1	chr7	92874120	92874320	-	1	NA	NA	NA	12	NM_001080995	74041	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	0.095000	0.636816	
mm_7341.1	chr1	105967650	105967850	-	1	NA	NA	NA	-22656	NM_001122676	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.005000	0.422886	
mm_74741.1	chr8	18902173	18902373	-	1	NA	NA	NA	48598	NM_001286469	319581	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.025000	0.537313	
mm_14845.1	chr2	148395247	148395447	+	1	NA	NA	NA	-30	NM_009219	20608	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0.155000	0.756219	
mm_111399.1	chr12	90738937	90739137	-	1	NA	NA	NA	0	NM_010050	13371	Mm.21389	NM_010050	ENSMUSG00000007682	Dio2	5DII|AI324267|DIOII	deiodinase, iodothyronine, type II	protein-coding	0.020000	0.512438	-34(ATGTATAAAAGG,-,0.00)
mm_163599.1	chr13	44528770	44528970	+	1	NA	NA	NA	89143	NR_045489	69491	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.010000	0.477612	
mm_102179.1	chr11	54028521	54028721	-	1	NA	NA	NA	-517	NM_001330304	30805	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	0.065000	0.587065	
mm_44453.1	chr5	21784996	21785196	-	1	NA	NA	NA	69	NM_009584	22791	Mm.266312	NM_009584	ENSMUSG00000029014	Dnajc2	AU020218|MIDA1|Zrf1|Zrf2	DnaJ heat shock protein family (Hsp40) member C2	protein-coding	0.120000	0.731343	
mm_38025.1	chr4	133814020	133814220	-	1	NA	NA	NA	-60509	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.135000	0.776119	
mm_102343.1	chr11	58072942	58073142	-	1	NA	NA	NA	-31111	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.005000	0.522388	
mm_110339.1	chr12	36039458	36039658	-	1	NA	NA	NA	2920	NM_025359	66109	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0.010000	0.417910	
mm_28611.1	chr3	94786348	94786548	-	1	NA	NA	NA	67	NM_001293727	70737	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	0.070000	0.666667	
mm_152530.1	chr19	11324497	11324697	-	1	NA	NA	NA	10098	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.005000	0.502488	
mm_31772.1	chr4	63554506	63554706	+	1	NA	NA	NA	-5754	NM_144905	230279	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.005000	0.378109	
mm_117090.1	chr13	59769689	59769889	-	1	NA	NA	NA	0	NM_026921	69046	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	0.120000	0.701493	
mm_69723.1	chr7	140760662	140760862	-	1	NA	NA	NA	-3070	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.000000	0.308458	
mm_12565.1	chr2	72979013	72979213	+	1	NA	NA	NA	168	NM_001098425	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.130000	0.761194	
mm_16701.1	chr2	6938333	6938533	-	1	NA	NA	NA	-9711	NR_027890	68144	Mm.483289	NM_026575		5031426D15Rik	-	RIKEN cDNA 5031426D15 gene	ncRNA	0.010000	0.343284	
mm_51075.1	chr6	66896386	66896586	+	1	NA	NA	NA	89	NM_001177556	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.160000	0.781095	
mm_164059.1	chr14	109045102	109045302	+	1	NA	NA	NA	-130963	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.000000	0.298507	
mm_33808.1	chr4	135152445	135152645	+	1	NA	NA	NA	31900	NM_019732	12399	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.190000	0.800995	
mm_94616.1	chr11	16753227	16753427	+	1	NA	NA	NA	1124	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.030000	0.557214	
mm_35647.1	chr4	43523656	43523856	-	1	NA	NA	NA	-202	NM_001277875	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.055000	0.661692	
mm_83692.1	chr9	50561226	50561426	-	1	NA	NA	NA	-58	NM_025687	66654	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	0.115000	0.681592	
mm_24046.1	chr3	87857875	87858075	+	1	NA	NA	NA	11220	NM_021309	27371	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	0.025000	0.482587	
mm_143517.1	chr17	73107759	73107959	-	1	NA	NA	NA	-126	NM_001177968	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.070000	0.621891	-21(CTCCTTTAAAGG,-,0.00),-20(TCCTTTAAAGGA,+,0.00),-20(TCCTTTAAAGGA,-,0.00),-19(CCTTTAAAGGAA,+,0.00)
mm_118597.1	chr14	20694871	20695071	+	1	NA	NA	NA	3	NM_028428	73068	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	0.080000	0.681592	
mm_123492.1	chr14	66124394	66124594	-	1	NA	NA	NA	28	NM_001271402	13850	Mm.15295	NM_007940	ENSMUSG00000022040	Ephx2	CEH|Eph2|SEH|sEP	epoxide hydrolase 2, cytoplasmic	protein-coding	0.090000	0.681592	
mm_132105.1	chr16	31428776	31428976	+	1	NA	NA	NA	123	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.085000	0.656716	
mm_47741.1	chr5	130254304	130254504	-	1	NA	NA	NA	1126	NM_023248	66711	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	Shwachman-Bodian-Diamond syndrome homolog (human)	protein-coding	0.005000	0.452736	
mm_64753.1	chr7	4812257	4812457	-	1	NA	NA	NA	-17	NM_133777	77891	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	0.140000	0.661692	-30(AGCTATAAAAGT,-,0.00)
mm_44637.1	chr5	28055352	28055552	-	1	NA	NA	NA	-15960	NM_153526	231070	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.010000	0.512438	77(CTCTTTTAATGG,-,0.00),79(CTTTTAATGGAA,+,0.00)
mm_92832.1	chr10	81482551	81482751	-	1	NA	NA	NA	58	NM_176954	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.145000	0.776119	
mm_11532.1	chr2	32629205	32629405	+	1	NA	NA	NA	-195	NM_021515	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.000000	0.582090	
mm_25354.1	chr3	107036069	107036269	+	1	NA	NA	NA	7	NM_008418	16491	Mm.30640	NM_008418	ENSMUSG00000047959	Kcna3	Kca1-3|Kv1.3|Mk-3	potassium voltage-gated channel, shaker-related subfamily, member 3	protein-coding	0.130000	0.800995	
mm_84758.1	chr9	75597550	75597750	-	1	NA	NA	NA	1483	NM_001038710	50876	Mm.291880	NM_016711	ENSMUSG00000032186	Tmod2	N-Tmod|NTMOD	tropomodulin 2	protein-coding	0.015000	0.472637	
mm_61977.1	chr7	90887197	90887397	+	1	NA	NA	NA	-203489	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.040000	0.522388	
mm_59707.1	chr7	28716709	28716909	+	1	NA	NA	NA	19	NM_015796	50760	Mm.358659	NM_015796	ENSMUSG00000030598	Fbxo17	Fbg4|Fbx17|Fbxo26	F-box protein 17	protein-coding	0.065000	0.696517	
mm_107551.1	chr12	41024285	41024485	+	1	NA	NA	NA	295	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.115000	0.696517	
mm_57824.1	chr6	129462879	129463079	-	1	NA	NA	NA	9800	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.383085	
mm_2457.1	chr1	104768502	104768702	+	1	NA	NA	NA	-217	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding	0.070000	0.601990	-34(TGGTCTTAAAGG,-,0.00)
mm_10687.1	chr2	22622092	22622292	+	1	NA	NA	NA	-135	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.055000	0.651741	
mm_95102.1	chr11	34047224	34047424	+	1	NA	NA	NA	123	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.020000	0.542289	
mm_46196.1	chr5	98030539	98030739	-	1	NA	NA	NA	323	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.055000	0.686567	
mm_159090.1	chr2	32315749	32315949	-	1	NA	NA	NA	-2416	NR_128563	104795665		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	0.025000	0.616915	
mm_128902.1	chr15	73360343	73360543	-	1	NA	NA	NA	62748	NM_007982	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.020000	0.482587	
mm_73427.1	chr8	106135372	106135572	+	1	NA	NA	NA	72	NR_040346	69771	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.030000	0.567164	
mm_148802.1	chr19	6263172	6263372	+	1	NA	NA	NA	-1371	NR_029830	723957		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0.020000	0.601990	-97(CCTCTTAGGGTC,+,0.00)
mm_109954.1	chr12	11436513	11436713	-	1	NA	NA	NA	36	NM_012038	26950	Mm.27005	NM_012038	ENSMUSG00000054459	Vsnl1	VILIP|Vnsl1	visinin-like 1	protein-coding	0.070000	0.631841	
mm_168895.1	chr12	50789873	50790073	-	1	NA	NA	NA	-140750	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding	0.025000	0.542289	
mm_121531.1	chr14	122280588	122280788	+	1	NA	NA	NA	-47050	NR_015532	68245	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.045000	0.557214	
mm_118891.1	chr14	26626783	26626983	+	1	NA	NA	NA	-11314	NM_007479	11843	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.015000	0.412935	
mm_77021.1	chr8	108584448	108584648	-	1	NA	NA	NA	129	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.015000	0.517413	-82(GCGTCTATAGGG,-,0.00)
mm_49104.1	chr6	8217284	8217484	+	1	NA	NA	NA	8157	NM_145374	252875	Mm.257151	NM_145374	ENSMUSG00000042447	Mios	C81488	missing oocyte, meiosis regulator, homolog (Drosophila)	protein-coding	0.005000	0.328358	
mm_144552.1	chr18	31568320	31568520	+	1	NA	NA	NA	41482	NM_026165	67453	Mm.23896	NM_026165	ENSMUSG00000024259	Slc25a46	1200007B05Rik|AI325987	solute carrier family 25, member 46	protein-coding	0.030000	0.482587	-92(ATGTTTAAAAGG,-,0.00),-33(TTCTATAAAAAC,-,0.00)
mm_166938.1	chr7	40540986	40541186	-	1	NA	NA	NA	-133651	NR_045504	71029	Mm.399496	NR_045504	ENSMUSG00000102004	4933402C06Rik	-	RIKEN cDNA 4933402C06 gene	ncRNA	0.005000	0.457711	
mm_20040.1	chr2	120089979	120090179	-	1	NA	NA	NA	56646	NM_145378	211429	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	0.020000	0.557214	
mm_86178.1	chr9	119190216	119190416	-	1	NA	NA	NA	77	NM_001037749	382113	Mm.335525	NM_001037749	ENSMUSG00000070280	Slc22a14	Gm1128	solute carrier family 22 (organic cation transporter), member 14	protein-coding	0.010000	0.542289	
mm_43538.1	chr5	137350070	137350270	+	1	NA	NA	NA	61	NM_010144	13846	Mm.34533	NM_010144	ENSMUSG00000029710	Ephb4	AI042935|Htk|MDK2|Myk1|Tyro11	Eph receptor B4	protein-coding	0.095000	0.681592	
mm_140097.1	chr17	78264731	78264931	+	1	NA	NA	NA	64583	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.005000	0.373134	
mm_158566.1	chrX	150458706	150458906	-	1	NA	NA	NA	344	NM_001164683	382245	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding	0.010000	0.378109	24(GCTCTTATAGTA,+,0.00)
mm_87693.1	chr10	59582232	59582432	+	1	NA	NA	NA	34360	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.000000	0.398010	
mm_150114.1	chr19	29703699	29703899	+	1	NA	NA	NA	5858	NM_029993	77836	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	0.040000	0.577114	
mm_121896.1	chr14	21831026	21831226	-	1	NA	NA	NA	-435	NM_011695	22334	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0.035000	0.621891	
mm_170663.1	chr2	113920438	113920638	-	1	NA	NA	NA	-71877	NM_181416	228482	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	0.050000	0.507463	-86(CTTTTTATAAGG,+,0.00),-86(CTTTTTATAAGG,-,0.00)
mm_118760.1	chr14	22405365	22405565	+	1	NA	NA	NA	137333	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.000000	0.313433	
mm_150339.1	chr19	34576025	34576225	+	1	NA	NA	NA	-7404	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.005000	0.388060	
mm_113017.1	chr13	21981378	21981578	+	1	NA	NA	NA	284	NM_001162929	195236	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	0.115000	0.686567	-31(GCTTTTCTGGCG,+,0.00)
mm_130233.1	chr15	96460799	96460999	-	1	NA	NA	NA	-56	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.145000	0.786070	
mm_146388.1	chr18	82692510	82692710	+	1	NA	NA	NA	124	NM_177832	329002	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.225000	0.870647	
mm_133201.1	chr16	73072265	73072465	+	1	NA	NA	NA	409216	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.010000	0.502488	
mm_155990.1	chrX	106143775	106143975	+	1	NA	NA	NA	600	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.005000	0.278607	
mm_158903.1	chr1	34579468	34579668	+	1	NA	NA	NA	-125	NM_213727	211383	Mm.330696	NM_213727	ENSMUSG00000045174	Amer3	9430069J07Rik|Fam123c	APC membrane recruitment 3	protein-coding	0.115000	0.706468	
mm_81760.1	chr9	114057339	114057539	+	1	NA	NA	NA	85	NM_001101510	382111	Mm.376140	NM_001101510	ENSMUSG00000086596	Susd5	Gm1126	sushi domain containing 5	protein-coding	0.125000	0.751244	
mm_79458.1	chr9	56418293	56418493	+	1	NA	NA	NA	-343	NM_172924	244895	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	0.045000	0.512438	
mm_103911.1	chr11	83588062	83588262	-	1	NA	NA	NA	4925	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.015000	0.412935	
mm_139456.1	chr17	55952651	55952851	+	1	NA	NA	NA	128	NM_015766	50498	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	0.010000	0.567164	
mm_162858.1	chr10	90892530	90892730	-	1	NA	NA	NA	62787	NM_001347053	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.000000	0.303483	
mm_19910.1	chr2	114228579	114228779	-	1	NA	NA	NA	-27247	NM_175466	228491	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	0.015000	0.383085	
mm_91621.1	chr10	41716348	41716548	-	1	NA	NA	NA	93215	NM_001243075	103268	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	0.010000	0.482587	
mm_134905.1	chr16	30258260	30258460	-	1	NA	NA	NA	9172	NM_027904	71756	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.000000	0.552239	
mm_136760.1	chr17	8801379	8801579	+	1	NA	NA	NA	-266	NM_011866	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.070000	0.736318	
mm_132563.1	chr16	38089409	38089609	+	1	NA	NA	NA	-249	NR_033221	414072	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.110000	0.731343	
mm_54872.1	chr6	42601520	42601720	-	1	NA	NA	NA	-4248	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.437811	
mm_170883.1	chr2	21062783	21062983	+	1	NA	NA	NA	94009	NR_033225	433408	Mm.386941	NR_033225		Gm13375	OTTMUSG00000011664	predicted gene 13375	ncRNA	0.035000	0.522388	-74(CTCTATATAGCC,+,0.00)
mm_1871.1	chr1	85600588	85600788	+	1	NA	NA	NA	-15	NM_001013817	434484	Mm.445821	NM_001013817	ENSMUSG00000070031	Sp140	-	Sp140 nuclear body protein	protein-coding	0.015000	0.512438	
mm_16391.1	chr2	178850528	178850728	+	1	NA	NA	NA	420113	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.035000	0.507463	
mm_3347.1	chr1	138137319	138137519	+	1	NA	NA	NA	37707	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.373134	
mm_53666.1	chr6	141629413	141629613	+	1	NA	NA	NA	-5	NM_020495	28253	Mm.272223	NM_020495	ENSMUSG00000030236	Slco1b2	7330442B20Rik|OATP-C|OATP2|Oatp1b2|Oatp4|Slc21a10|Slc21a6|lst-1|mlst-1	solute carrier organic anion transporter family, member 1b2	protein-coding	0.005000	0.402985	
mm_125573.1	chr15	59323527	59323727	+	1	NA	NA	NA	8535	NM_009270	20775	Mm.296169	NM_009270	ENSMUSG00000022351	Sqle	AI323792	squalene epoxidase	protein-coding	0.040000	0.512438	
mm_134272.1	chr16	13986790	13986990	-	1	NA	NA	NA	-23	NM_001270718	74482	Mm.484026	NM_028968	ENSMUSG00000065968	Ifitm7	4933438K12Rik|Mil4	interferon induced transmembrane protein 7	protein-coding	0.055000	0.606965	
mm_82128.1	chr9	123510430	123510630	+	1	NA	NA	NA	-19352	NM_030692	83493	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.010000	0.427861	
mm_153304.1	chr19	38022521	38022721	-	1	NA	NA	NA	20956	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.000000	0.378109	
mm_19644.1	chr2	102861566	102861766	-	1	NA	NA	NA	39999	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.025000	0.447761	
mm_123018.1	chr14	55116115	55116315	-	1	NA	NA	NA	720	NM_177049	319984	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.015000	0.552239	
mm_129489.1	chr15	78773369	78773569	-	1	NA	NA	NA	-24	NM_008595	17305	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.045000	0.716418	
mm_112021.1	chr12	111442205	111442405	-	1	NA	NA	NA	-356	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.035000	0.587065	
mm_45132.1	chr5	48786825	48787025	-	1	NA	NA	NA	102632	NM_030265	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.005000	0.283582	
mm_25970.1	chr3	132843013	132843213	+	1	NA	NA	NA	35483	NR_102297	101243624	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	0.005000	0.452736	
mm_142575.1	chr17	46680670	46680870	-	1	NA	NA	NA	-13	NM_001277311	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.100000	0.681592	
mm_112553.1	chr13	12468767	12468967	+	1	NA	NA	NA	-7129	NM_001291057	56048	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.005000	0.472637	
mm_151908.1	chr19	5799433	5799633	-	1	NA	NA	NA	3139	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.000000	0.293532	-69(GCTTTTATATTA,+,0.00)
mm_112793.1	chr13	20240710	20240910	+	1	NA	NA	NA	150303	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.005000	0.527363	
mm_15955.1	chr2	165992546	165992746	+	1	NA	NA	NA	9	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.140000	0.746269	
mm_114627.1	chr13	76115175	76115375	+	1	NA	NA	NA	16541	NM_001081352	218343	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	mKIAA0372	tetratricopeptide repeat domain 37	protein-coding	0.000000	0.378109	
mm_80708.1	chr9	92250026	92250226	+	1	NA	NA	NA	-68	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.030000	0.542289	
mm_38058.1	chr4	134012293	134012493	-	1	NA	NA	NA	6423	NM_145833	83557	Mm.302567	NM_145833	ENSMUSG00000050966	Lin28a	AL024421|ENSMUSG00000070700|Gm10299|Lin-28|Lin28|Tex17|lin-28A	lin-28 homolog A (C. elegans)	protein-coding	0.015000	0.517413	
mm_30351.1	chr3	151749487	151749687	-	1	NA	NA	NA	372	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.020000	0.422886	-51(GTGTTTAAAGAG,-,0.00),-32(CTCTTTAAGAGG,-,0.00),-31(TCTTTAAGAGGG,+,0.00)
mm_90557.1	chr10	128190392	128190592	+	1	NA	NA	NA	-4143	NM_001285777	216456	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	0.020000	0.462687	
mm_108443.1	chr12	82420362	82420562	+	1	NA	NA	NA	109113	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.020000	0.457711	
mm_131385.1	chr16	14205415	14205615	+	1	NA	NA	NA	42240	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.025000	0.567164	
mm_16436.1	chr2	180394381	180394581	+	1	NA	NA	NA	-3898	NR_029901	723954		NR_029901	ENSMUSG00000065460	Mir133a-2	Mirn133a-2|mir-133a-2	microRNA 133a-2	ncRNA	0.005000	0.437811	
mm_78949.1	chr9	45138524	45138724	+	1	NA	NA	NA	-418	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.095000	0.671642	
mm_17626.1	chr2	31031760	31031960	-	1	NA	NA	NA	49581	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.000000	0.427861	
mm_96262.1	chr11	62648593	62648793	+	1	NA	NA	NA	29	NM_175002	216829	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	0.155000	0.825871	
mm_5025.1	chr1	193173647	193173847	+	1	NA	NA	NA	170	NM_181048	319266	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	0.075000	0.621891	
mm_79701.1	chr9	60840628	60840828	+	1	NA	NA	NA	46180	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.015000	0.472637	
mm_162341.1	chr1	47659254	47659454	+	1	NA	NA	NA	-192229	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA	0.005000	0.393035	
mm_146204.1	chr18	76342959	76343159	+	1	NA	NA	NA	80614	NM_001311070	17126	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0.025000	0.497512	
mm_86173.1	chr9	119184040	119184240	-	1	NA	NA	NA	6253	NM_001037749	382113	Mm.335525	NM_001037749	ENSMUSG00000070280	Slc22a14	Gm1128	solute carrier family 22 (organic cation transporter), member 14	protein-coding	0.005000	0.412935	
mm_43533.1	chr5	137294553	137294753	+	1	NA	NA	NA	-16	NM_027356	70240	Mm.124666	NM_027356	ENSMUSG00000051502	Ufsp1	2700038N03Rik|D5Ertd655e	UFM1-specific peptidase 1	protein-coding	0.075000	0.646766	-11(CCTTTTAGAAGG,+,0.00)
mm_2859.1	chr1	131688678	131688878	+	1	NA	NA	NA	83	NM_001311096	226421	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0.015000	0.527363	
mm_134294.1	chr16	14269978	14270178	-	1	NA	NA	NA	21330	NM_001161775	17880	Mm.250705	NM_013607	ENSMUSG00000018830	Myh11	AV071570|SM1|SM2|smMHC	myosin, heavy polypeptide 11, smooth muscle	protein-coding	0.020000	0.442786	18(CTCTTTATAGCT,+,0.00)
mm_122642.1	chr14	51256031	51256231	-	1	NA	NA	NA	-19	NM_053113	93726	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	0.010000	0.537313	
mm_66352.1	chr7	43527354	43527554	-	1	NA	NA	NA	5717	NM_001111058	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.005000	0.402985	
mm_14438.1	chr2	130667720	130667920	+	1	NA	NA	NA	-21	NM_025922	16434	Mm.21399	NM_025922	ENSMUSG00000074797	Itpa	2010016I08Rik|AU020102|Itp	inosine triphosphatase (nucleoside triphosphate pyrophosphatase)	protein-coding	0.080000	0.601990	
mm_127935.1	chr15	10496184	10496384	-	1	NA	NA	NA	10246	NM_001289447	19355	Mm.38376	NM_011232	ENSMUSG00000022248	Rad1	mRAD1	RAD1 checkpoint DNA exonuclease	protein-coding	0.020000	0.482587	-30(GCATTTAAAAAC,-,0.00),54(CCCTTTTTGAGG,-,0.00)
mm_164112.1	chr15	30033469	30033669	+	1	NA	NA	NA	-139024	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.000000	0.437811	
mm_128896.1	chr15	73268269	73268469	-	1	NA	NA	NA	-13487	NR_029561	387169		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA	0.010000	0.512438	
mm_80228.1	chr9	72663662	72663862	+	1	NA	NA	NA	1415	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.020000	0.363184	
mm_30593.1	chr4	6365581	6365781	+	1	NA	NA	NA	1	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.140000	0.761194	
mm_62152.1	chr7	97133662	97133862	+	1	NA	NA	NA	52011	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.000000	0.373134	
mm_137675.1	chr17	28801018	28801218	+	1	NA	NA	NA	-8	NM_001081315	268936	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0.100000	0.791045	
mm_125941.1	chr15	76247967	76248167	+	1	NA	NA	NA	-124	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.005000	0.646766	
mm_59497.1	chr7	27537485	27537685	+	1	NA	NA	NA	14324	NM_001033315	233020	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.050000	0.572139	
mm_32076.1	chr4	98111378	98111578	+	1	NA	NA	NA	271787	NM_053157	94043	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.015000	0.368159	
mm_141392.1	chr17	29188999	29189199	-	1	NA	NA	NA	48691	NM_153166	240058	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	0.025000	0.631841	
mm_10856.1	chr2	25054318	25054518	+	1	NA	NA	NA	39	NM_001177655	56876	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.075000	0.681592	
mm_133299.1	chr16	77530657	77530857	+	1	NA	NA	NA	-68179	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.000000	0.402985	
mm_79897.1	chr9	65346010	65346210	+	1	NA	NA	NA	42	NM_016688	50996	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	0.070000	0.592040	
mm_83846.1	chr9	54489099	54489299	-	1	NA	NA	NA	12427	NM_172771	235380	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.005000	0.333333	
mm_59457.1	chr7	27195763	27195963	+	1	NA	NA	NA	82	NM_001243888	414069	Mm.379069	NM_001243888	ENSMUSG00000078786	BC024978	-	cDNA sequence BC024978	protein-coding	0.095000	0.626866	
mm_16104.1	chr2	169632906	169633106	+	1	NA	NA	NA	-640	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.050000	0.527363	
mm_84672.1	chr9	72028407	72028607	-	1	NA	NA	NA	65066	NR_029879	723889		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.000000	0.283582	
mm_136349.1	chr16	92694824	92695024	-	1	NA	NA	NA	2405	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.050000	0.482587	
mm_49295.1	chr6	17693971	17694171	+	1	NA	NA	NA	77	NM_001289625	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.150000	0.751244	
mm_148815.1	chr19	6297856	6298056	+	1	NA	NA	NA	-8501	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.005000	0.572139	
mm_26276.1	chr3	142505400	142505600	+	1	NA	NA	NA	8566	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.035000	0.572139	
mm_151833.1	chr19	5688560	5688760	-	1	NA	NA	NA	248	NM_144868	104401	Mm.329650	NM_144868	ENSMUSG00000054874	Pcnx3	Pcnxl3|mKIAA4073	pecanex homolog 3	protein-coding	0.105000	0.656716	
mm_81286.1	chr9	108306290	108306490	+	1	NA	NA	NA	230	NM_016802	11848	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	0.180000	0.791045	
mm_81248.1	chr9	107975527	107975727	+	1	NA	NA	NA	60	NM_023738	74153	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0.010000	0.512438	
mm_153312.1	chr19	38043254	38043454	-	1	NA	NA	NA	223	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.050000	0.606965	
mm_7690.1	chr1	128712741	128712941	-	1	NA	NA	NA	-120542	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.005000	0.572139	
mm_138548.1	chr17	35263876	35264076	+	1	NA	NA	NA	853	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.095000	0.641791	
mm_110911.1	chr12	76216768	76216968	-	1	NA	NA	NA	29878	NM_019784	80384	Mm.78551	NM_019784	ENSMUSG00000021056	Tex21	4931406F04Rik|4931412D23Rik|4931421K24Rik|tsec-2	testis expressed gene 21	protein-coding	0.030000	0.557214	
mm_169675.1	chr15	66424390	66424590	-	1	NA	NA	NA	76420	NM_019457	54562	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	0.010000	0.472637	
mm_166572.1	chr6	49068761	49068961	+	1	NA	NA	NA	-4934	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.010000	0.467662	
mm_104733.1	chr11	98328250	98328450	-	1	NA	NA	NA	1295	NM_010895	18013	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0.115000	0.741294	
mm_16848.1	chr2	11596631	11596831	-	1	NA	NA	NA	6468	NM_152824	76938	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0.015000	0.507463	
mm_44633.1	chr5	27791332	27791532	-	1	NA	NA	NA	118	NM_018878	55982	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	0.130000	0.751244	
mm_118777.1	chr14	23432380	23432580	+	1	NA	NA	NA	-337909	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA	0.000000	0.437811	
mm_56413.1	chr6	97248432	97248632	-	1	NA	NA	NA	4248	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.005000	0.343284	24(GTTTTTAAAAGA,-,0.00)
mm_164579.1	chr17	25184461	25184661	+	1	NA	NA	NA	0	NM_183150	214489	Mm.274433	NM_183150	ENSMUSG00000067722	BC003965	Ccsmst1	cDNA sequence BC003965	protein-coding	0.110000	0.592040	
mm_106705.1	chr12	3805917	3806117	+	1	NA	NA	NA	-963	NM_007872	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.010000	0.616915	
mm_77760.1	chr9	3000006	3000206	+	1	NA	NA	NA	38637	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.010000	0.343284	
mm_119678.1	chr14	52794989	52795189	+	1	NA	NA	NA	-299394	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.010000	0.467662	
mm_31715.1	chr4	62634364	62634564	+	1	NA	NA	NA	14792	NM_134257	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.015000	0.572139	
mm_132437.1	chr16	35928584	35928784	+	1	NA	NA	NA	-9786	NM_030253	80285	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.015000	0.388060	
mm_35085.1	chr4	7687261	7687461	-	1	NA	NA	NA	126673	NR_040645	71510	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0.005000	0.467662	
mm_27756.1	chr3	69598803	69599003	-	1	NA	NA	NA	57	NM_020026	26879	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0.205000	0.781095	
mm_110151.1	chr12	26450647	26450847	-	1	NA	NA	NA	5705	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.015000	0.432836	
mm_33686.1	chr4	133411924	133412124	+	1	NA	NA	NA	42248	NR_039582	100628620		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	0.045000	0.606965	
mm_46356.1	chr5	103099971	103100171	-	1	NA	NA	NA	-41679	NM_001318131	26414	Mm.39253	NM_009158	ENSMUSG00000046709	Mapk10	C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding	0.010000	0.492537	
mm_81872.1	chr9	119063380	119063580	+	1	NA	NA	NA	10702	NM_001164567	22351	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	0.050000	0.611940	
mm_48923.1	chr6	4505140	4505340	+	1	NA	NA	NA	-378	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.025000	0.656716	
mm_143823.1	chr17	83847805	83848005	-	1	NA	NA	NA	-1115	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.005000	0.542289	
mm_19893.1	chr2	114051856	114052056	-	1	NA	NA	NA	919	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.060000	0.611940	
mm_47994.1	chr5	136116441	136116641	-	1	NA	NA	NA	-150	NM_011293	20022	Mm.4896	NM_011293	ENSMUSG00000039771	Polr2j	14.5kDa|Polr2i|Rpb11a|Rpo2-4	polymerase (RNA) II (DNA directed) polypeptide J	protein-coding	0.085000	0.631841	
mm_3646.1	chr1	152954913	152955113	+	1	NA	NA	NA	-88	NM_175460	226518	Mm.40548	NM_175460	ENSMUSG00000042751	Nmnat2	AI843915|D030041I09Rik|PNAT1|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding	0.070000	0.582090	
mm_34932.1	chr4	155839643	155839843	+	1	NA	NA	NA	63	NM_024263	74761	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	0.050000	0.636816	
mm_123322.1	chr14	62761036	62761236	-	1	NA	NA	NA	-24	NM_008715	18130	Mm.319684	NM_008715	ENSMUSG00000035161	Ints6	2900075H24Rik|AI480962|DICE1|Ddx26|HDB|Notch2l	integrator complex subunit 6	protein-coding	0.050000	0.606965	
mm_128718.1	chr15	64012733	64012933	-	1	NA	NA	NA	47615	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.005000	0.447761	
mm_117805.1	chr13	97482444	97482644	-	1	NA	NA	NA	-157	NR_110430	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.000000	0.497512	-5(TTCCTTAAAAGG,-,0.00),-3(CCTTAAAAGGTA,+,0.00)
mm_48865.1	chr5	149831489	149831689	-	1	NA	NA	NA	-16158	NR_045758	70969	Mm.78499	NR_045758	ENSMUSG00000107214	4930500F04Rik	4931407C17Rik	RIKEN cDNA 4930500F04 gene	ncRNA	0.065000	0.507463	
mm_44823.1	chr5	33657815	33658015	-	1	NA	NA	NA	-83	NM_026698	68366	Mm.491151	NM_026698	ENSMUSG00000019295	Tmem129	0610039G24Rik|2410015J15Rik|AA409575	transmembrane protein 129	protein-coding	0.075000	0.651741	
mm_114883.1	chr13	94224786	94224986	+	1	NA	NA	NA	60395	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.080000	0.567164	
mm_146118.1	chr18	74288287	74288487	+	1	NA	NA	NA	5287	NM_028948	74453	Mm.182293	NM_028948	ENSMUSG00000035394	Cfap53	4933415I03Rik|Ccdc11	cilia and flagella associated protein 53	protein-coding	0.000000	0.487562	
mm_22823.1	chr3	27231412	27231612	+	1	NA	NA	NA	48508	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.005000	0.482587	
mm_4855.1	chr1	187608885	187609085	+	1	NA	NA	NA	-21	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.065000	0.582090	-1(CTATTTATAGTC,+,0.00)
mm_46023.1	chr5	90932855	90933055	-	1	NA	NA	NA	1759	NM_026788	665563	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	0.000000	0.452736	
mm_106558.1	chr11	120630010	120630210	-	1	NA	NA	NA	3437	NM_010756	17134	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.015000	0.552239	
mm_131579.1	chr16	18426305	18426505	+	1	NA	NA	NA	-12	NM_013711	26462	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0.115000	0.716418	
mm_113108.1	chr13	24416076	24416276	+	1	NA	NA	NA	1054	NM_001284520	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.015000	0.442786	18(CATTTTTAAAGG,-,0.00),19(ATTTTTAAAGGC,+,0.00)
mm_147078.1	chr18	35615302	35615502	-	1	NA	NA	NA	11825	NM_011397	20522	Mm.22702	NM_011397	ENSMUSG00000024354	Slc23a1	D18Ucla2|SVCT1|Slc23a2|YSPL3	solute carrier family 23 (nucleobase transporters), member 1	protein-coding	0.000000	0.353234	
mm_154380.1	chrM	11198	11398	+	1	NA	NA	NA	NA	NA									0.005000	0.328358	-75(CCACTTATAGCC,+,0.00)
mm_71065.1	chr8	34080688	34080888	+	1	NA	NA	NA	27026	NM_001293758	22428	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.025000	0.482587	
mm_41552.1	chr5	92940442	92940642	+	1	NA	NA	NA	42549	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.050000	0.636816	
mm_4994.1	chr1	191817373	191817573	+	1	NA	NA	NA	-4000	NM_010892	18005	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0.025000	0.487562	
mm_50238.1	chr6	42351388	42351588	+	1	NA	NA	NA	1660	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.010000	0.552239	
mm_149913.1	chr19	26605075	26605275	+	1	NA	NA	NA	15	NM_011416	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.050000	0.532338	
mm_140718.1	chr17	15375141	15375341	-	1	NA	NA	NA	582	NM_007865	13388	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta-like 1 (Drosophila)	protein-coding	0.065000	0.631841	
mm_42697.1	chr5	119876484	119876684	+	1	NA	NA	NA	41921	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.005000	0.437811	
mm_32380.1	chr4	106316215	106316415	+	1	NA	NA	NA	102	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.145000	0.810945	
mm_85908.1	chr9	111056767	111056967	-	1	NA	NA	NA	377	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.035000	0.497512	
mm_19887.1	chr2	114050327	114050527	-	1	NA	NA	NA	2448	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.020000	0.522388	
mm_135121.1	chr16	35841435	35841635	-	1	NA	NA	NA	29847	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.020000	0.432836	
mm_56899.1	chr6	119188514	119188714	-	1	NA	NA	NA	7795	NM_001255997	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.030000	0.567164	
mm_95407.1	chr11	49846811	49847011	+	1	NA	NA	NA	160	NM_016961	26420	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0.150000	0.796020	
mm_82257.1	chr9	4796143	4796343	-	1	NA	NA	NA	-9	NM_019691	14802	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.080000	0.636816	
mm_54430.1	chr6	34041690	34041890	-	1	NA	NA	NA	12342	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.005000	0.562189	-35(GGTTTTAAAAGC,-,0.00),-34(GTTTTAAAAGCC,+,0.00)
mm_113293.1	chr13	30345443	30345643	+	1	NA	NA	NA	9187	NM_177322	11607	Mm.35062	NM_177322	ENSMUSG00000049115	Agtr1a	1810074K20Rik|AG2S|AI551199|AT1|AT1a|AT2R1|AT2R1A|Agtr-1a|Agtr1|Angtr-1a	angiotensin II receptor, type 1a	protein-coding	0.020000	0.497512	
mm_24696.1	chr3	95122426	95122626	+	1	NA	NA	NA	-1988	NM_016712	50874	Mm.71935	NM_016712	ENSMUSG00000005628	Tmod4	MTMOD|Sk-Tmod	tropomodulin 4	protein-coding	0.055000	0.621891	
mm_111470.1	chr12	98574662	98574862	-	1	NA	NA	NA	-50	NM_001316665	72258	Mm.196158	NM_029911	ENSMUSG00000033854	Kcnk10	1700024D23Rik|3010005K24Rik|Trek2	potassium channel, subfamily K, member 10	protein-coding	0.120000	0.696517	
mm_214.1	chr1	16688332	16688532	+	1	NA	NA	NA	-24	NM_001159711	17087	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0.025000	0.402985	
mm_106684.1	chr12	3235721	3235921	+	1	NA	NA	NA	30	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.115000	0.656716	
mm_115099.1	chr13	102733161	102733361	+	1	NA	NA	NA	-26994	NR_130318	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.010000	0.477612	
mm_28693.1	chr3	95524787	95524987	-	1	NA	NA	NA	-1899	NM_021281	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.010000	0.492537	
mm_172834.1	chr9	25252509	25252709	+	1	NA	NA	NA	170	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.130000	0.706468	
mm_74575.1	chr8	11211475	11211675	-	1	NA	NA	NA	-101230	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.000000	0.412935	
mm_3826.1	chr1	159313686	159313886	+	1	NA	NA	NA	20013	NR_144489	100846986		NR_144489		Pou5f1-rs1	Gm21053|Oct4P2|Otf-3rs|Otf3-rs1|Otf3a	POU domain, class 5, transcription factor 1, related sequence 1	pseudo	0.005000	0.273632	
mm_78819.1	chr9	44086102	44086302	+	1	NA	NA	NA	1282	NM_198091	53376	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.015000	0.577114	
mm_11969.1	chr2	53605061	53605261	+	1	NA	NA	NA	413077	NM_022989	65103	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	0.000000	0.398010	
mm_102707.1	chr11	66526622	66526822	-	1	NA	NA	NA	-596	NM_001034874	380702	Mm.351764	NM_001034874	ENSMUSG00000053930	Shisa6	Gm879|ckamp52	shisa family member 6	protein-coding	0.120000	0.716418	
mm_91854.1	chr10	59221635	59221835	-	1	NA	NA	NA	112	NM_001024911	103080	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	0.100000	0.691542	
mm_17364.1	chr2	26671221	26671421	-	1	NA	NA	NA	-39	NM_010695	16821	Mm.123925	NM_010695	ENSMUSG00000026919	Lcn4	A630045M08Rik|Vnsp2	lipocalin 4	protein-coding	0.000000	0.487562	-34(GTCCATAAAGGG,-,0.00)
mm_45252.1	chr5	62765482	62765682	-	1	NA	NA	NA	595	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.010000	0.417910	
mm_144880.1	chr18	36793828	36794028	+	1	NA	NA	NA	5	NM_025594	66492	Mm.251155	NM_025594	ENSMUSG00000001383	Zmat2	2610510D14Rik|2900082I05Rik	zinc finger, matrin type 2	protein-coding	0.050000	0.542289	
mm_135934.1	chr16	74052905	74053105	-	1	NA	NA	NA	289062	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.005000	0.353234	
mm_114279.1	chr13	58281065	58281265	+	1	NA	NA	NA	-6977	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.015000	0.482587	
mm_109919.1	chr12	8498197	8498397	-	1	NA	NA	NA	1688	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.025000	0.487562	
mm_22797.1	chr3	22331385	22331585	+	1	NA	NA	NA	80115	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0.005000	0.447761	-24(ACCTTTTAAAAG,-,0.00),-23(CCTTTTAAAAGG,+,0.00),-23(CCTTTTAAAAGG,-,0.00),-22(CTTTTAAAAGGA,+,0.00)
mm_102822.1	chr11	69012382	69012582	-	1	NA	NA	NA	-3429	NM_001281465	68964	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	0.030000	0.492537	
mm_120332.1	chr14	63370516	63370716	+	1	NA	NA	NA	46571	NM_007549	12143	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.025000	0.522388	-36(TGCTTTAAAGAC,-,0.00)
mm_132333.1	chr16	33819451	33819651	+	1	NA	NA	NA	-10114	NM_010580	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.015000	0.567164	
mm_17593.1	chr2	30658327	30658527	-	1	NA	NA	NA	19584	NR_136917	665635	Mm.450149	NR_136917		Gm14486	OTTMUSG00000016802	predicted gene 14486	ncRNA	0.125000	0.661692	
mm_88513.1	chr10	78049742	78049942	+	1	NA	NA	NA	0	NM_019448	54427	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.025000	0.631841	
mm_167656.1	chr9	70389652	70389852	+	1	NA	NA	NA	16001	NR_049200	100885839		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0.005000	0.457711	
mm_51359.1	chr6	72627441	72627641	+	1	NA	NA	NA	-1747	NR_040422	100038714	Mm.321330	NR_040421		Gm15401	ENSMUSG00000072999|OTTMUSG00000021199	predicted gene 15401	ncRNA	0.055000	0.681592	
mm_121162.1	chr14	103010111	103010311	+	1	NA	NA	NA	23592	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.020000	0.462687	-88(CCTTAAATAAAG,+,0.00)
mm_111309.1	chr12	85816310	85816510	-	1	NA	NA	NA	8135	NM_021446	58520	Mm.143795	NM_021446	ENSMUSG00000021252	0610007P14Rik	1190004E09Rik|AU019315|C77855|ORF11	RIKEN cDNA 0610007P14 gene	protein-coding	0.015000	0.507463	
mm_102338.1	chr11	57831990	57832190	-	1	NA	NA	NA	57	NM_008213	15110	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed transcript 1	protein-coding	0.040000	0.567164	44(CCTTATATAAGC,+,0.00),44(CCTTATATAAGC,-,0.00)
mm_86004.1	chr9	112233024	112233224	-	1	NA	NA	NA	-623	NM_001177616	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.010000	0.417910	
mm_82140.1	chr9	123769078	123769278	+	1	NA	NA	NA	1967	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.005000	0.482587	
mm_167832.1	chr9	124424086	124424286	-	1	NA	NA	NA	399	NR_015516	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.090000	0.606965	
mm_81284.1	chr9	108306194	108306394	+	1	NA	NA	NA	134	NM_016802	11848	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	0.140000	0.706468	
mm_107330.1	chr12	31949498	31949698	+	1	NA	NA	NA	937	NM_177993	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.115000	0.731343	
mm_107832.1	chr12	69258064	69258264	+	1	NA	NA	NA	16332	NM_178253	271005	Mm.180969	NM_178253	ENSMUSG00000051890	Klhdc1	-	kelch domain containing 1	protein-coding	0.030000	0.437811	-18(GTTTATAAACGC,+,0.00)
mm_114332.1	chr13	60647408	60647608	+	1	NA	NA	NA	45297	NM_134062	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.010000	0.522388	
mm_126035.1	chr15	76879218	76879418	+	1	NA	NA	NA	42	NM_145916	223669	Mm.38948	NM_145916	ENSMUSG00000033669	Zfp7	KRAB20|KRAB7|Krox-2|Zfp-7|Zfp65|Zfp80|Zfp86-rs1|mszf73-2	zinc finger protein 7	protein-coding	0.075000	0.616915	61(GTTTTTAGGGCA,+,0.00)
mm_79977.1	chr9	66872477	66872677	+	1	NA	NA	NA	-37871	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.020000	0.562189	
mm_22548.1	chr3	9249942	9250142	+	1	NA	NA	NA	-525	NM_177660	229055	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0.075000	0.552239	
mm_33274.1	chr4	128654608	128654808	+	1	NA	NA	NA	6	NM_001195130	54383	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic-like 2 (Drosophila)	protein-coding	0.095000	0.716418	
mm_169646.1	chr15	52089164	52089364	+	1	NA	NA	NA	49157	NM_175503	239435	Mm.24204	NM_175503	ENSMUSG00000068522	Aard	A5D3|AV328152	alanine and arginine rich domain containing protein	protein-coding	0.050000	0.542289	
mm_9783.1	chr1	181211886	181212086	-	1	NA	NA	NA	-8	NM_145514	226757	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.090000	0.671642	
mm_151156.1	chr19	53185666	53185866	+	1	NA	NA	NA	41769	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.030000	0.527363	
mm_44001.1	chr5	146845040	146845240	+	1	NA	NA	NA	69	NM_026864	68895	Mm.266978	NM_026864	ENSMUSG00000029641	Rasl11a	1110065D03Rik|AI852031	RAS-like, family 11, member A	protein-coding	0.110000	0.691542	
mm_88466.1	chr10	77581230	77581430	+	1	NA	NA	NA	-437	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.030000	0.477612	
mm_154291.1	chr19	61122511	61122711	-	1	NA	NA	NA	18229	NR_131956	414758	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0.000000	0.328358	
mm_168925.1	chr12	63048199	63048399	-	1	NA	NA	NA	360512	NR_131949	73309	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0.035000	0.492537	
mm_37386.1	chr4	121008617	121008817	-	1	NA	NA	NA	8530	NM_133716	69780	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	0.000000	0.447761	
mm_165282.1	chr2	83724426	83724626	+	1	NA	NA	NA	129	NM_008402	16410	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.130000	0.761194	
mm_59167.1	chr7	24399716	24399916	+	1	NA	NA	NA	188	NM_028047	71997	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.075000	0.636816	
mm_39921.1	chr5	31527009	31527209	+	1	NA	NA	NA	114	NM_001347328	20534	Mm.352407	NM_009206	ENSMUSG00000029141	Slc4a1ap	kanadaptin	solute carrier family 4 (anion exchanger), member 1, adaptor protein	protein-coding	0.060000	0.587065	
mm_171416.1	chr4	13124849	13125049	-	1	NA	NA	NA	218112	NM_001171801	208820	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding	0.060000	0.651741	
mm_14587.1	chr2	136007249	136007449	+	1	NA	NA	NA	-50578	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.020000	0.467662	-17(GCTTTTAGGCGA,+,0.00)
mm_25183.1	chr3	103325317	103325517	+	1	NA	NA	NA	46124	NM_001079830	94093	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.000000	0.338308	
mm_64709.1	chr7	4628282	4628482	-	1	NA	NA	NA	2100	NM_023440	68255	Mm.389784	NM_023440	ENSMUSG00000045282	Tmem86b	C330014O21Rik	transmembrane protein 86B	protein-coding	0.015000	0.552239	
mm_57876.1	chr6	130337452	130337652	-	1	NA	NA	NA	74	NM_001289605	16634	Mm.425338	NM_010648	ENSMUSG00000067591	Klra3	5E6|Ly49c|NK-2.1|Nk-2|Nk2|Nk2.1	killer cell lectin-like receptor, subfamily A, member 3	protein-coding	0.035000	0.427861	
mm_71562.1	chr8	51375703	51375903	+	1	NA	NA	NA	1007691	NR_046067	100039954	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.005000	0.313433	
mm_19171.1	chr2	84343800	84344000	-	1	NA	NA	NA	81366	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.000000	0.432836	
mm_72654.1	chr8	84842608	84842808	+	1	NA	NA	NA	-2043	NM_009010	19358	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.010000	0.507463	
mm_39727.1	chr5	28324344	28324544	+	1	NA	NA	NA	7255	NM_028234	381626	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	0.005000	0.358209	
mm_150115.1	chr19	29703733	29703933	+	1	NA	NA	NA	5892	NM_029993	77836	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	0.035000	0.557214	
mm_33568.1	chr4	132260411	132260611	+	1	NA	NA	NA	1038	NM_020273	56809	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	0.020000	0.502488	
mm_79240.1	chr9	50504258	50504458	+	1	NA	NA	NA	447	NR_040714	69631	Mm.414996	NR_040714	ENSMUSG00000101304	Plet1os	2310014F07Rik	placenta expressed transcript 1, opposite strand	ncRNA	0.015000	0.527363	
mm_70782.1	chr8	22411319	22411519	+	1	NA	NA	NA	79	NM_020560	57312	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	0.055000	0.542289	
mm_141635.1	chr17	32965627	32965827	-	1	NA	NA	NA	-11	NR_033585	77875	Mm.245027	NR_033585		Cyp4f41-ps	6030422M01Rik	cytochrome P450, family 4, subfamily f, polypeptide 41 pseudogene	pseudo	0.035000	0.497512	
mm_28415.1	chr3	90389847	90390047	-	1	NA	NA	NA	-9	NM_011988	26568	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	0.105000	0.696517	
mm_119411.1	chr14	44997081	44997281	+	1	NA	NA	NA	9070	NM_008964	19217	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.005000	0.393035	
mm_105184.1	chr11	101966913	101967113	-	1	NA	NA	NA	2	NM_024449	74499	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0.025000	0.606965	-35(GGCTTTAAAAAG,-,0.00),-34(GCTTTAAAAAGG,+,0.00),-33(CTTTAAAAAGGC,+,0.00)
mm_31401.1	chr4	48047149	48047349	+	1	NA	NA	NA	1944	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.060000	0.616915	
mm_58916.1	chr7	17713098	17713298	+	1	NA	NA	NA	-54	NM_028480	73250	Mm.244138	NM_028480	ENSMUSG00000008789	Ceacam5	1600029H12Rik|Psg30	carcinoembryonic antigen-related cell adhesion molecule 5	protein-coding	0.000000	0.457711	
mm_139542.1	chr17	56717689	56717889	+	1	NA	NA	NA	27	NM_027244	69875	Mm.279823	NM_027244	ENSMUSG00000002379	Ndufa11	2010012C24Rik|AV006275|B14.7	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11	protein-coding	0.100000	0.592040	
mm_1190.1	chr1	62703291	62703491	+	1	NA	NA	NA	74	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.095000	0.716418	-35(GGCCTGAAAAGG,-,0.00)
mm_63450.1	chr7	127511986	127512186	+	1	NA	NA	NA	103	NM_001304266	100043597	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	0.100000	0.641791	
mm_29137.1	chr3	105801207	105801407	-	1	NA	NA	NA	74	NM_145541	109905	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein-1a	protein-coding	0.155000	0.805970	
mm_54135.1	chr6	21852339	21852539	-	1	NA	NA	NA	76	NM_173007	269831	Mm.21950	NM_173007	ENSMUSG00000029669	Tspan12	9030619E17|AI426782|AI663988|AW111457|Tm4sf12	tetraspanin 12	protein-coding	0.040000	0.552239	-75(CCATTTTAAAGG,-,0.00),-74(CATTTTAAAGGG,+,0.00)
mm_119218.1	chr14	33216760	33216960	+	1	NA	NA	NA	37	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.015000	0.452736	
mm_5469.1	chr1	36557439	36557639	-	1	NA	NA	NA	18	NM_001304330	20353	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.075000	0.676617	
mm_150079.1	chr19	29386889	29387089	+	1	NA	NA	NA	19551	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.298507	
mm_117624.1	chr13	91861278	91861478	-	1	NA	NA	NA	15507	NM_198415	76722	Mm.316438	NM_198415	ENSMUSG00000021622	Ckmt2	2300008A19Rik|ScCKmit	creatine kinase, mitochondrial 2	protein-coding	0.045000	0.587065	
mm_13081.1	chr2	91206418	91206618	+	1	NA	NA	NA	3606	NM_007387	11432	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.005000	0.512438	
mm_11586.1	chr2	33206925	33207125	+	1	NA	NA	NA	-8936	NM_011923	26360	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0.015000	0.507463	
mm_10981.1	chr2	25877765	25877965	+	1	NA	NA	NA	82	NM_001302351	227632	Mm.119462	NM_175462	ENSMUSG00000058740	Kcnt1	C030030G16Rik|Slack|Slo2.2|slo2	potassium channel, subfamily T, member 1	protein-coding	0.125000	0.771144	
mm_91568.1	chr10	40072164	40072364	-	1	NA	NA	NA	-46996	NM_144821	215929	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.005000	0.467662	
mm_71096.1	chr8	35206441	35206641	+	1	NA	NA	NA	-169200	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.025000	0.542289	-35(GGCTATAAATAG,-,0.00)
mm_141870.1	chr17	34823359	34823559	-	1	NA	NA	NA	-5	NM_011413	625018	Mm.439678	NM_011413		C4a	Slp|SlpA	complement component 4A (Rodgers blood group)	protein-coding	0.015000	0.572139	
mm_55418.1	chr6	65125690	65125890	-	1	NA	NA	NA	18940	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.015000	0.462687	
mm_35716.1	chr4	44526179	44526379	-	1	NA	NA	NA	-176521	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0.005000	0.477612	
mm_151277.1	chr19	55253560	55253760	+	1	NA	NA	NA	291	NM_027976	433256	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.045000	0.547264	
mm_103883.1	chr11	83573579	83573779	-	1	NA	NA	NA	4957	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.010000	0.378109	36(GCATTTAGGGCC,+,0.00),46(CCTTTTATAGAG,+,0.00)
mm_138014.1	chr17	33909319	33909519	+	1	NA	NA	NA	-26	NM_007829	13163	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0.110000	0.706468	
mm_48508.1	chr5	142821188	142821388	-	1	NA	NA	NA	-3901	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.025000	0.507463	
mm_90400.1	chr10	127325565	127325765	+	1	NA	NA	NA	1938	NM_146011	216445	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.025000	0.547264	
mm_68966.1	chr7	126584323	126584523	-	1	NA	NA	NA	-585	NM_138310	171504	Mm.170665	NM_138310	ENSMUSG00000042759	Apobr	Apob-48r|Apob48r	apolipoprotein B receptor	protein-coding	0.010000	0.457711	
mm_62293.1	chr7	99979621	99979821	+	1	NA	NA	NA	737	NM_175388	108937	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.040000	0.557214	
mm_152981.1	chr19	29499108	29499308	-	1	NA	NA	NA	22779	NR_015567	77779	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.010000	0.532338	
mm_113168.1	chr13	24813371	24813571	+	1	NA	NA	NA	11814	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.020000	0.402985	-31(GCATTTATACAC,+,0.00)
mm_92394.1	chr10	76599612	76599812	-	1	NA	NA	NA	23692	NM_146007	12834	Mm.1949	NM_146007	ENSMUSG00000020241	Col6a2	Col6a-2	collagen, type VI, alpha 2	protein-coding	0.035000	0.572139	
mm_91031.1	chr10	18023147	18023347	-	1	NA	NA	NA	5	NM_028440	73112	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	0.040000	0.597015	
mm_160380.1	chr8	43182793	43182993	+	1	NA	NA	NA	-229	NM_001160412	622117	Mm.390031	NM_001160412	ENSMUSG00000091490	Triml2	EG622117|Tu4	tripartite motif family-like 2	protein-coding	0.005000	0.452736	
mm_160623.1	chr9	98422647	98422847	+	1	NA	NA	NA	-214	NM_011254	19659	Mm.279741	NM_011254	ENSMUSG00000046402	Rbp1	CRBPI|Crbp|Rbp-1	retinol binding protein 1, cellular	protein-coding	0.020000	0.517413	
mm_110031.1	chr12	16850638	16850838	-	1	NA	NA	NA	39773	NM_033270	50496	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	0.005000	0.552239	
mm_149825.1	chr19	24476661	24476861	+	1	NA	NA	NA	713	NM_026520	68034	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding	0.015000	0.492537	
mm_121957.1	chr14	24486929	24487129	-	1	NA	NA	NA	17	NM_001081247	218832	Mm.343610	NM_183157	ENSMUSG00000025280	Polr3a	9330175N20Rik|BC053071|RPC1|RPC155	polymerase (RNA) III (DNA directed) polypeptide A	protein-coding	0.090000	0.616915	
mm_67636.1	chr7	84409803	84410003	-	1	NA	NA	NA	135	NM_007488	11864	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding	0.150000	0.800995	
mm_11719.1	chr2	36249560	36249760	+	1	NA	NA	NA	19234	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.000000	0.402985	
mm_80599.1	chr9	86467143	86467343	+	1	NA	NA	NA	89	NM_177208	320615	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0.175000	0.786070	
mm_94215.1	chr11	3163820	3164020	+	1	NA	NA	NA	29543	NM_030207	78887	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.015000	0.472637	
mm_68348.1	chr7	106507059	106507259	-	1	NA	NA	NA	-66086	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.482587	
mm_70492.1	chr8	12572939	12573139	+	1	NA	NA	NA	-10	NM_024279	78634	Mm.116871	NM_024279	ENSMUSG00000010435	Spaca7	1700094C09Rik	sperm acrosome associated 7	protein-coding	0.015000	0.547264	
mm_153866.1	chr19	46672792	46672992	-	1	NA	NA	NA	108	NM_007809	13074	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.010000	0.492537	-34(GCCTTTTAAAAG,-,0.00),-33(CCTTTTAAAAGT,+,0.00)
mm_31195.1	chr4	43631493	43631693	+	1	NA	NA	NA	-342	NM_173788	230103	Mm.103477	NM_173788	ENSMUSG00000028469	Npr2	GC-B|GC-B2|GC-B3|cn|mNPR-B|pwe	natriuretic peptide receptor 2	protein-coding	0.095000	0.741294	
mm_121145.1	chr14	101898463	101898663	+	1	NA	NA	NA	57940	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.020000	0.472637	
mm_156280.1	chrX	136837036	136837236	+	1	NA	NA	NA	14390	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.010000	0.432836	
mm_133345.1	chr16	81238609	81238809	+	1	NA	NA	NA	38012	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.005000	0.308458	
mm_49337.1	chr6	21312113	21312313	+	1	NA	NA	NA	96104	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.000000	0.437811	-91(CACTTTTAAGGG,-,0.00),-90(ACTTTTAAGGGG,+,0.00)
mm_149044.1	chr19	8820599	8820799	+	1	NA	NA	NA	1298	NM_001081196	68693	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0.110000	0.691542	
mm_133883.1	chr16	96525330	96525530	+	1	NA	NA	NA	57824	NM_008791	18546	Mm.5023	NM_008791	ENSMUSG00000090223	Pcp4	P16Rimb19|Pcp-4|Pep19	Purkinje cell protein 4	protein-coding	0.010000	0.412935	
mm_26301.1	chr3	142509787	142509987	+	1	NA	NA	NA	12953	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.015000	0.442786	
mm_87632.1	chr10	58324587	58324787	+	1	NA	NA	NA	1221	NM_026148	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.000000	0.303483	
mm_61912.1	chr7	90144651	90144851	+	1	NA	NA	NA	14519	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.005000	0.338308	
mm_120393.1	chr14	64652390	64652590	+	1	NA	NA	NA	-41	NM_001081177	16554	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.110000	0.696517	
mm_137730.1	chr17	29274125	29274325	+	1	NA	NA	NA	5437	NM_030561	80748	Mm.290116	NM_030561	ENSMUSG00000052712	BC004004	2400006G15Rik	cDNA sequence BC004004	protein-coding	0.030000	0.527363	
mm_129125.1	chr15	76171972	76172172	-	1	NA	NA	NA	23638	NM_201394	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.020000	0.457711	
mm_3948.1	chr1	163994830	163995030	+	1	NA	NA	NA	-15	NM_027279	69962	Mm.27284	NM_027279	ENSMUSG00000041396	Mettl18	2810422O20Rik|C78571	methyltransferase like 18	protein-coding	0.070000	0.572139	
mm_132740.1	chr16	44123450	44123650	+	1	NA	NA	NA	15469	NM_007508	11964	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.010000	0.447761	
mm_114163.1	chr13	55413487	55413687	+	1	NA	NA	NA	1645	NM_029303	75477	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	0.035000	0.606965	
mm_75029.1	chr8	31949987	31950187	-	1	NA	NA	NA	-31884	NM_178591	211323	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding	0.040000	0.497512	
mm_149454.1	chr19	11497478	11497678	+	1	NA	NA	NA	5540	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.000000	0.472637	
mm_16799.1	chr2	10116629	10116829	-	1	NA	NA	NA	13954	NM_010582	16425	Mm.182043	NM_010582	ENSMUSG00000037254	Itih2	AI747202|Intin2|Itih-2	inter-alpha trypsin inhibitor, heavy chain 2	protein-coding	0.010000	0.492537	
mm_54901.1	chr6	47550876	47551076	-	1	NA	NA	NA	44054	NM_007971	14056	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.000000	0.482587	
mm_19474.1	chr2	92540851	92541051	-	1	NA	NA	NA	-51255	NR_106080	102466819		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	0.005000	0.467662	
mm_12700.1	chr2	76537233	76537433	+	1	NA	NA	NA	38327	NM_001290735	99031	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding	0.005000	0.502488	
mm_160899.1	chr11	74045285	74045485	-	1	NA	NA	NA	-113	NM_147003	259005	Mm.377784	NM_147003	ENSMUSG00000047444	Olfr139	M5|MOR255-2	olfactory receptor 139	protein-coding	0.005000	0.417910	
mm_141078.1	chr17	25861383	25861583	-	1	NA	NA	NA	32	NM_001163766	106618	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	0.145000	0.686567	
mm_103521.1	chr11	76844219	76844419	-	1	NA	NA	NA	2689	NM_007754	12874	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0.005000	0.452736	
mm_59117.1	chr7	19831982	19832182	+	1	NA	NA	NA	-9327	NM_033601	12051	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.020000	0.577114	
mm_118798.1	chr14	24490653	24490853	+	1	NA	NA	NA	72	NM_011297	20088	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	0.085000	0.646766	
mm_43492.1	chr5	136953591	136953791	+	1	NA	NA	NA	416	NM_001347504	66437	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	0.015000	0.412935	
mm_140774.1	chr17	17876574	17876774	-	1	NA	NA	NA	7265	NM_013521	14293	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0.005000	0.467662	25(CACTTTAAATGC,-,0.00)
mm_89995.1	chr10	112227463	112227663	+	1	NA	NA	NA	-43560	NM_001025581	268345	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0.000000	0.522388	-33(AACTATAAAAGG,-,0.00)
mm_5795.1	chr1	52090972	52091172	-	1	NA	NA	NA	-28366	NM_009283	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.035000	0.482587	
mm_115063.1	chr13	100770301	100770501	+	1	NA	NA	NA	5498	NM_021886	26886	Mm.273502	NM_021886	ENSMUSG00000045273	Cenph	1700021I11Rik|2410018A12Rik|2610042E16Rik|2810046K12Rik|AU044255|CENP-H|ENP	centromere protein H	protein-coding	0.010000	0.497512	
mm_85582.1	chr9	107296389	107296589	-	1	NA	NA	NA	-170	NM_001317354	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.040000	0.582090	
mm_61985.1	chr7	91090612	91090812	+	1	NA	NA	NA	-74	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.010000	0.417910	83(CTATATATAGCC,+,0.00)
mm_69131.1	chr7	127026904	127027104	-	1	NA	NA	NA	-525	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.040000	0.731343	
mm_75325.1	chr8	43141396	43141596	-	1	NA	NA	NA	-10	NM_177742	244448	Mm.64542	NM_177742	ENSMUSG00000031651	Triml1	4933403D14|BC050188	tripartite motif family-like 1	protein-coding	0.005000	0.467662	
mm_138237.1	chr17	34417254	34417454	+	1	NA	NA	NA	18534	NM_001163855	407788	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	0.010000	0.462687	
mm_165024.1	chr19	32389345	32389545	+	1	NA	NA	NA	229	NR_033198	67188	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	0.090000	0.706468	
mm_22689.1	chr3	17789960	17790160	+	1	NA	NA	NA	139	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.025000	0.412935	56(TTTTTTAAAGCA,+,0.00)
mm_90598.1	chr10	128322307	128322507	+	1	NA	NA	NA	-52	NM_019953	56530	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy FGF signaling regulator 2	protein-coding	0.055000	0.577114	
mm_114442.1	chr13	66441182	66441382	+	1	NA	NA	NA	-164	NM_001290196	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.010000	0.497512	
mm_60243.1	chr7	43727000	43727200	+	1	NA	NA	NA	14533	NM_001039042	626834	Mm.389891	NM_001039042	ENSMUSG00000054046	Klk13	Egfbp-2|mGk-13	kallikrein related-peptidase 13	protein-coding	0.000000	0.388060	
mm_54016.1	chr6	8364372	8364572	-	1	NA	NA	NA	105184	NM_001302353	100036521	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039|OTTMUSG00000029336	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0.015000	0.467662	
mm_91573.1	chr10	40128229	40128429	-	1	NA	NA	NA	13925	NM_028247	72472	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.015000	0.472637	
mm_82923.1	chr9	35116677	35116877	-	1	NA	NA	NA	33	NM_009178	20443	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0.130000	0.771144	
mm_96813.1	chr11	69992276	69992476	+	1	NA	NA	NA	1006	NM_019749	56486	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0.015000	0.373134	
mm_85648.1	chr9	107656584	107656784	-	1	NA	NA	NA	10715	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.020000	0.557214	
mm_57171.1	chr6	122846424	122846624	-	1	NA	NA	NA	9633	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.015000	0.358209	
mm_30766.1	chr4	15988929	15989129	+	1	NA	NA	NA	24848	NM_145950	209212	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.020000	0.422886	
mm_52076.1	chr6	97827353	97827553	+	1	NA	NA	NA	20395	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.015000	0.452736	
mm_90399.1	chr10	127325543	127325743	+	1	NA	NA	NA	1916	NM_146011	216445	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.025000	0.562189	
mm_162533.1	chr1	165839792	165839992	-	1	NA	NA	NA	51211	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.015000	0.577114	
mm_159567.1	chr4	112081428	112081628	+	1	NA	NA	NA	58	NM_178786	320640	Mm.253775	NM_178786	ENSMUSG00000055960	Skint4	9530098N22Rik	selection and upkeep of intraepithelial T cells 4	protein-coding	0.000000	0.383085	
mm_128219.1	chr15	36346077	36346277	-	1	NA	NA	NA	-63030	NM_013923	30945	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0.020000	0.452736	
mm_40645.1	chr5	64970012	64970212	+	1	NA	NA	NA	37	NM_026667	68303	Mm.258545	NM_026667	ENSMUSG00000029185	Fam114a1	1190001N04Rik|9130005N14Rik|Noxp20	family with sequence similarity 114, member A1	protein-coding	0.140000	0.810945	
mm_165857.1	chr4	19709077	19709277	-	1	NA	NA	NA	-173	NR_074090	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.105000	0.731343	
mm_110709.1	chr12	69357013	69357213	-	1	NA	NA	NA	63	NM_025441	66244	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0.080000	0.601990	
mm_83515.1	chr9	46031128	46031328	-	1	NA	NA	NA	18408	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.025000	0.532338	-64(ACCTCTTTAAGG,-,0.00),-62(CTCTTTAAGGAG,+,0.00)
mm_28665.1	chr3	95281575	95281775	-	1	NA	NA	NA	401	NM_173347	229589	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	0.065000	0.631841	
mm_135935.1	chr16	74279101	74279301	-	1	NA	NA	NA	62866	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.000000	0.323383	
mm_118085.1	chr13	103753036	103753236	-	1	NA	NA	NA	11446	NM_172592	218543	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0.025000	0.373134	
mm_69824.1	chr7	141265877	141266077	-	1	NA	NA	NA	447	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.040000	0.552239	
mm_50371.1	chr6	48676315	48676515	+	1	NA	NA	NA	280	NM_174960	317758	Mm.116971	NM_174960	ENSMUSG00000051124	Gimap9	A630002K24|BB145400	GTPase, IMAP family member 9	protein-coding	0.010000	0.527363	33(CCCTTTATAGAA,+,0.00)
mm_86906.1	chr10	22644998	22645198	+	1	NA	NA	NA	87	NM_178934	353169	Mm.473705	NM_178934	ENSMUSG00000037490	Slc2a12	GLUT-12|Glut12	solute carrier family 2 (facilitated glucose transporter), member 12	protein-coding	0.050000	0.562189	
mm_79070.1	chr9	46240688	46240888	+	1	NA	NA	NA	-56	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.005000	0.587065	
mm_30288.1	chr3	148989370	148989570	-	1	NA	NA	NA	-34835	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.075000	0.636816	
mm_164645.1	chr17	35253463	35253663	+	1	NA	NA	NA	2274	NR_106169	102465886		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	0.045000	0.517413	
mm_70040.1	chr7	142577737	142577937	-	1	NA	NA	NA	309	NR_130974	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.035000	0.597015	
mm_100405.1	chr11	119410100	119410300	+	1	NA	NA	NA	19728	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.015000	0.562189	
mm_18517.1	chr2	62645853	62646053	-	1	NA	NA	NA	302	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.050000	0.572139	
mm_80140.1	chr9	70754074	70754274	+	1	NA	NA	NA	75192	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.000000	0.328358	-77(TTTTTTATAGGG,+,0.00)
mm_67748.1	chr7	92258581	92258781	-	1	NA	NA	NA	23711	NM_001243047	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.010000	0.402985	
mm_41566.1	chr5	93154892	93155092	+	1	NA	NA	NA	51503	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.030000	0.487562	
mm_71551.1	chr8	48109913	48110113	+	1	NA	NA	NA	0	NM_001161515	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	0.070000	0.651741	
mm_97947.1	chr11	83664336	83664536	+	1	NA	NA	NA	1852	NM_013652	20303	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.015000	0.512438	
mm_1866.1	chr1	85272308	85272508	+	1	NA	NA	NA	-1842	NM_001037909	620078	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik|OTTMUSG00000029174	RIKEN cDNA C130026I21 gene	protein-coding	0.025000	0.552239	
mm_72832.1	chr8	88272345	88272545	+	1	NA	NA	NA	42	NM_007406	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.080000	0.686567	
mm_37180.1	chr4	117277546	117277746	-	1	NA	NA	NA	11809	NM_001310730	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.025000	0.582090	43(TTCTCTAAATGG,-,0.00)
mm_74376.1	chr8	128685326	128685526	+	1	NA	NA	NA	-228	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.070000	0.681592	
mm_14975.1	chr2	152105631	152105831	+	1	NA	NA	NA	207	NM_029688	76650	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.130000	0.766169	
mm_109723.1	chr12	116281105	116281305	+	1	NA	NA	NA	-17	NM_028731	52635	Mm.273755	NM_028731	ENSMUSG00000021171	Esyt2	2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b	extended synaptotagmin-like protein 2	protein-coding	0.100000	0.706468	
mm_66380.1	chr7	43953884	43954084	-	1	NA	NA	NA	3318	NM_008457	16624	Mm.435488	NM_008457	ENSMUSG00000063089	Klk1b8	Klk8|Nrpn|TADG14|kallikrein|mGK-8	kallikrein 1-related peptidase b8	protein-coding	0.015000	0.542289	
mm_104756.1	chr11	98463746	98463946	-	1	NA	NA	NA	17012	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.025000	0.537313	
mm_157890.1	chrX	75987534	75987734	-	1	NA	NA	NA	-112452	NM_001346519	102866	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	0.020000	0.507463	
mm_159547.1	chr4	96077310	96077510	-	1	NA	NA	NA	130	NM_145548	230459	Mm.268175	NM_145548	ENSMUSG00000028571	Cyp2j13	-	cytochrome P450, family 2, subfamily j, polypeptide 13	protein-coding	0.055000	0.611940	
mm_76467.1	chr8	85380925	85381125	-	1	NA	NA	NA	16	NM_001297612	213435	Mm.32804	NM_175441	ENSMUSG00000031698	Mylk3	D830007F02Rik|MLCK	myosin light chain kinase 3	protein-coding	0.025000	0.572139	
mm_18009.1	chr2	38287085	38287285	-	1	NA	NA	NA	199	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.105000	0.771144	
mm_39847.1	chr5	30913301	30913501	+	1	NA	NA	NA	-385	NM_133918	100952	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	0.020000	0.606965	
mm_138457.1	chr17	35138496	35138696	+	1	NA	NA	NA	2882	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.010000	0.537313	
mm_62825.1	chr7	113513738	113513938	+	1	NA	NA	NA	4	NM_027379	67420	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.135000	0.686567	
mm_10325.1	chr2	11339233	11339433	+	1	NA	NA	NA	-156	NR_040369	100503147	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	OTTMUSG00000011311	predicted gene 13293	ncRNA	0.015000	0.502488	
mm_34972.1	chr4	156012462	156012662	+	1	NA	NA	NA	-1133	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.005000	0.437811	
mm_157653.1	chrX	57326599	57326799	-	1	NA	NA	NA	12030	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	0.035000	0.651741	
mm_172253.1	chr6	70217345	70217545	-	1	NA	NA	NA	574730	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.427861	
mm_87134.1	chr10	34284808	34285008	+	1	NA	NA	NA	2718	NM_009433	22110	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.010000	0.338308	
mm_80588.1	chr9	85748642	85748842	+	1	NA	NA	NA	592	NM_001081282	108837	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.025000	0.522388	
mm_24808.1	chr3	95559581	95559781	+	1	NA	NA	NA	4	NM_001289532	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.080000	0.562189	
mm_139759.1	chr17	64600621	64600821	+	1	NA	NA	NA	-928	NM_008549	17158	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.150000	0.810945	
mm_70383.1	chr8	10435694	10435894	+	1	NA	NA	NA	281883	NM_001319151	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.010000	0.457711	
mm_87545.1	chr10	53596918	53597118	+	1	NA	NA	NA	57	NM_025541	66403	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0.090000	0.587065	
mm_161055.1	chr12	57307071	57307271	+	1	NA	NA	NA	76746	NM_001164370	73490	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0.000000	0.303483	71(GTGTATTTAAGC,-,0.00)
mm_65299.1	chr7	24589672	24589872	-	1	NA	NA	NA	-2131	NM_001033205	101544	Mm.20117	NM_001033205	ENSMUSG00000066721	Zfp575	AI326876|Znf575	zinc finger protein 575	protein-coding	0.010000	0.527363	
mm_141147.1	chr17	26506055	26506255	-	1	NA	NA	NA	2317	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.025000	0.527363	
mm_31454.1	chr4	48636802	48637002	+	1	NA	NA	NA	-26612	NM_026509	68016	Mm.133444	NM_026509	ENSMUSG00000028348	Murc	2310039E09Rik	muscle-related coiled-coil protein	protein-coding	0.055000	0.487562	
mm_11298.1	chr2	30171411	30171611	+	1	NA	NA	NA	-13	NM_007931	13804	Mm.474473	NM_007931	ENSMUSG00000015337	Endog	-	endonuclease G	protein-coding	0.095000	0.661692	-33(CGTCTTAAAAGG,-,0.00),-31(TCTTAAAAGGGC,+,0.00)
mm_117478.1	chr13	77047312	77047512	-	1	NA	NA	NA	88056	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0.005000	0.482587	
mm_124884.1	chr15	10253260	10253460	+	1	NA	NA	NA	29454	NM_001253781	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.005000	0.398010	
mm_33045.1	chr4	122995851	122996051	+	1	NA	NA	NA	20	NM_008506	16918	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	0.125000	0.731343	
mm_159430.1	chr3	108940349	108940549	+	1	NA	NA	NA	-108	NM_001078646	66715	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0.125000	0.786070	
mm_38914.1	chr4	149996338	149996538	-	1	NA	NA	NA	6798	NM_001291004	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.010000	0.492537	
mm_79338.1	chr9	53367548	53367748	+	1	NA	NA	NA	-16375	NM_212445	68304	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0.020000	0.427861	
mm_115678.1	chr13	13232866	13233066	-	1	NA	NA	NA	50250	NM_001311129	107849	Mm.392548	NM_181852	ENSMUSG00000055360	Prl2c5	Ghd3|MRP-4|Mrpplf4|PLF-4	prolactin family 2, subfamily c, member 5	protein-coding	0.065000	0.601990	
mm_33824.1	chr4	135495865	135496065	+	1	NA	NA	NA	-22	NM_030189	78806	Mm.374844	NM_030189	ENSMUSG00000028801	Stpg1	4930403G18Rik|4930555I21Rik|Mapo2	sperm tail PG rich repeat containing 1	protein-coding	0.045000	0.562189	
mm_37632.1	chr4	127358015	127358215	-	1	NA	NA	NA	49	NM_010291	14622	Mm.26859	NM_010291	ENSMUSG00000042357	Gjb5	Cnx31.1|Cx31.1|Gjb-5	gap junction protein, beta 5	protein-coding	0.015000	0.567164	
mm_42756.1	chr5	120847317	120847517	+	1	NA	NA	NA	50	NM_145153	243262	Mm.105369	NM_145153	ENSMUSG00000053765	Oas1f	-	2'-5' oligoadenylate synthetase 1F	protein-coding	0.015000	0.512438	-34(GGCCATAAAATG,-,0.00)
mm_54831.1	chr6	42585876	42586076	-	1	NA	NA	NA	11396	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.293532	
mm_92171.1	chr10	67571885	67572085	-	1	NA	NA	NA	-23030	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.005000	0.467662	
mm_20191.1	chr2	122611161	122611361	-	1	NA	NA	NA	16	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.120000	0.716418	
mm_146637.1	chr18	10610179	10610379	-	1	NA	NA	NA	73	NM_001081222	77805	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	0.130000	0.701493	
mm_109269.1	chr12	109545444	109545644	+	1	NA	NA	NA	146	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.015000	0.422886	
mm_62430.1	chr7	101361386	101361586	+	1	NA	NA	NA	13417	NM_001040111	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.010000	0.601990	
mm_121980.1	chr14	25856872	25857072	-	1	NA	NA	NA	14817	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.015000	0.497512	
mm_95321.1	chr11	46454834	46455034	+	1	NA	NA	NA	3	NM_134250	171285	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0.010000	0.517413	
mm_99862.1	chr11	109386473	109386673	+	1	NA	NA	NA	-22919	NR_038097	100036768	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	OTTMUSG00000003456	predicted gene 11696	ncRNA	0.010000	0.422886	
mm_7054.1	chr1	87128257	87128457	-	1	NA	NA	NA	3349	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.015000	0.542289	
mm_85726.1	chr9	108339853	108340053	-	1	NA	NA	NA	873	NM_001329528	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.060000	0.567164	
mm_98975.1	chr11	98690431	98690631	+	1	NA	NA	NA	7977	NM_009439	22123	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0.035000	0.537313	
mm_111233.1	chr12	84765235	84765435	-	1	NA	NA	NA	7777	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.025000	0.477612	
mm_55757.1	chr6	78378842	78379042	-	1	NA	NA	NA	-77	NM_013893	30053	Mm.33691	NM_013893	ENSMUSG00000068341	Reg3d	INGAP|Ingaprp	regenerating islet-derived 3 delta	protein-coding	0.005000	0.467662	66(TCGTTTTAAAAG,-,0.00),68(GTTTTAAAAGTG,+,0.00)
mm_135255.1	chr16	37697269	37697469	-	1	NA	NA	NA	-43001	NM_026610	68194	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.020000	0.557214	
mm_74930.1	chr8	25661377	25661577	-	1	NA	NA	NA	20900	NM_001081269	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.010000	0.517413	
mm_28191.1	chr3	88139837	88140037	-	1	NA	NA	NA	-2435	NM_001310587	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.025000	0.447761	
mm_96267.1	chr11	62650395	62650595	+	1	NA	NA	NA	1831	NM_175002	216829	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	0.015000	0.447761	-76(ATCTATAAAGGG,-,0.00)
mm_84835.1	chr9	78347076	78347276	-	1	NA	NA	NA	-31	NM_008182	14858	Mm.422778	NM_008182	ENSMUSG00000057933	Gsta2	Gst2-2|Gstc-2|Gstc2	glutathione S-transferase, alpha 2 (Yc2)	protein-coding	0.005000	0.477612	
mm_150826.1	chr19	44564966	44565166	+	1	NA	NA	NA	2212	NM_176958	319594	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	0.015000	0.388060	-81(GCTTTTATAACT,+,0.00)
mm_84842.1	chr9	78378431	78378631	-	1	NA	NA	NA	57	NM_026480	67968	Mm.26883	NM_026480	ENSMUSG00000032346	Ooep	2410146L05Rik|Floped|Moep19|Sddr	oocyte expressed protein	protein-coding	0.070000	0.646766	
mm_24640.1	chr3	94377342	94377542	+	1	NA	NA	NA	10	NR_121656	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.010000	0.621891	
mm_133438.1	chr16	87700062	87700262	+	1	NA	NA	NA	1208	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.025000	0.522388	-80(CTCTTTAAAAGA,-,0.00),-79(TCTTTAAAAGAG,+,0.00),11(CACTATAAAAGG,-,0.00)
mm_4358.1	chr1	171917628	171917828	+	1	NA	NA	NA	191	NM_030710	30925	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	0.025000	0.492537	
mm_163442.1	chr12	85487747	85487947	-	1	NA	NA	NA	13946	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.025000	0.567164	
mm_18099.1	chr2	44987710	44987910	-	1	NA	NA	NA	35367	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.020000	0.432836	-82(TGGTTTTAAAAG,-,0.00),-81(GGTTTTAAAAGC,-,0.00),-80(GTTTTAAAAGCC,+,0.00)
mm_97895.1	chr11	83321549	83321749	+	1	NA	NA	NA	18952	NM_001035854	71770	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979	adaptor-related protein complex 2, beta 1 subunit	protein-coding	0.010000	0.407960	
mm_32208.1	chr4	101507890	101508090	+	1	NA	NA	NA	14	NM_001164584	72685	Mm.76494	NM_198412	ENSMUSG00000028528	Dnajc6	2810027M23Rik|mKIAA0473	DnaJ heat shock protein family (Hsp40) member C6	protein-coding	0.045000	0.517413	
mm_52573.1	chr6	116338216	116338416	+	1	NA	NA	NA	294	NM_027920	71779	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	0.110000	0.726368	
mm_23121.1	chr3	37643932	37644132	+	1	NA	NA	NA	4085	NM_001305442	24063	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty homolog 1 (Drosophila)	protein-coding	0.030000	0.567164	
mm_146219.1	chr18	77038479	77038679	+	1	NA	NA	NA	8717	NM_027721	71206	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	0.005000	0.427861	
mm_24597.1	chr3	93445227	93445427	+	1	NA	NA	NA	2997	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.070000	0.582090	
mm_112727.1	chr13	19192584	19192784	+	1	NA	NA	NA	203129	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.467662	
mm_77999.1	chr9	8900469	8900669	+	1	NA	NA	NA	736	NM_008829	18667	Mm.12798	NM_008829	ENSMUSG00000031870	Pgr	9930019P03Rik|BB114106|ENSMUSG00000074510|NR3C3|PR|PR-A|PR-B	progesterone receptor	protein-coding	0.070000	0.631841	
mm_95862.1	chr11	58009038	58009238	+	1	NA	NA	NA	74	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.185000	0.835821	
mm_137608.1	chr17	28232712	28232912	+	1	NA	NA	NA	58	NM_011145	19015	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.125000	0.736318	
mm_56642.1	chr6	113326638	113326838	-	1	NA	NA	NA	-238	NM_010957	18294	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0.055000	0.601990	
mm_66795.1	chr7	47132424	47132624	-	1	NA	NA	NA	74	NM_001163565	19259	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0.110000	0.736318	
mm_105158.1	chr11	101467945	101468145	-	1	NA	NA	NA	-293	NM_009708	11858	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn	Rho family GTPase 2	protein-coding	0.080000	0.696517	
mm_31445.1	chr4	48585158	48585358	+	1	NA	NA	NA	65	NM_021436	230157	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0.175000	0.805970	
mm_874.1	chr1	52155050	52155250	+	1	NA	NA	NA	35528	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.015000	0.502488	
mm_100094.1	chr11	115604047	115604247	+	1	NA	NA	NA	-4	NM_025305	50529	Mm.193040	NM_025305	ENSMUSG00000046756	Mrps7	MRP-S7|Rpms7	mitchondrial ribosomal protein S7	protein-coding	0.095000	0.691542	
mm_67029.1	chr7	66684197	66684397	-	1	NA	NA	NA	5264	NM_080443	117589	Mm.34785	NM_080443	ENSMUSG00000030509	Asb7	AI449039|Asb-7|D030055C23Rik	ankyrin repeat and SOCS box-containing 7	protein-coding	0.000000	0.323383	
mm_62099.1	chr7	96211568	96211768	+	1	NA	NA	NA	-3	NM_001310760	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.050000	0.572139	
mm_4589.1	chr1	178331821	178332021	+	1	NA	NA	NA	5863	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.015000	0.388060	
mm_155751.1	chrX	96167251	96167451	+	1	NA	NA	NA	71306	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.000000	0.452736	
mm_130874.1	chr15	102243171	102243371	-	1	NA	NA	NA	3229	NM_001042727	19411	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.010000	0.552239	
mm_160995.1	chr11	113709411	113709611	-	1	NA	NA	NA	15	NM_026682	52670	Mm.229207	NM_026682	ENSMUSG00000018727	Cpsf4l	0610010C04Rik|1500000C01Rik|D11Ertd636e	cleavage and polyadenylation specific factor 4-like	protein-coding	0.050000	0.587065	-49(GGCTATATAGGA,-,0.00)
mm_33448.1	chr4	130663319	130663519	+	1	NA	NA	NA	60	NM_001159605	80912	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0.125000	0.701493	
mm_36451.1	chr4	82499209	82499409	-	1	NA	NA	NA	6470	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.020000	0.477612	
mm_58887.1	chr7	17088554	17088754	+	1	NA	NA	NA	14614	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.000000	0.437811	
mm_31303.1	chr4	46039108	46039308	+	1	NA	NA	NA	-14	NM_021883	21916	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0.130000	0.781095	
mm_153270.1	chr19	37174900	37175100	-	1	NA	NA	NA	1063	NM_001290826	208922	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.040000	0.527363	
mm_53096.1	chr6	125009591	125009791	+	1	NA	NA	NA	22	NM_175557	269800	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	0.060000	0.646766	
mm_70600.1	chr8	13338689	13338889	+	1	NA	NA	NA	-15	NM_001291766	21781	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	0.195000	0.830846	
mm_61078.1	chr7	51621904	51622104	+	1	NA	NA	NA	174	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.060000	0.542289	
mm_10713.1	chr2	22779825	22780025	+	1	NA	NA	NA	5598	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.000000	0.353234	
mm_110262.1	chr12	31713786	31713986	-	1	NA	NA	NA	40	NM_175191	73010	Mm.441517	NM_175191	ENSMUSG00000044067	Gpr22	2900068K05Rik|AW061316	G protein-coupled receptor 22	protein-coding	0.015000	0.507463	
mm_162521.1	chr1	157256681	157256881	-	1	NA	NA	NA	-148101	NM_001305063	73435	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	0.010000	0.492537	
mm_129833.1	chr15	83149229	83149429	-	1	NA	NA	NA	7	NM_178627	73826	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0.130000	0.676617	
mm_76829.1	chr8	104631216	104631416	-	1	NA	NA	NA	5	NM_019662	56437	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	0.065000	0.666667	-4(GTTTAAATAGGA,+,0.00)
mm_103504.1	chr11	76584186	76584386	-	1	NA	NA	NA	-6547	NM_198894	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.005000	0.477612	-7(TTTTTTAAAGGC,+,0.00)
mm_119355.1	chr14	41114723	41114923	+	1	NA	NA	NA	9790	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.030000	0.507463	
mm_52866.1	chr6	122308860	122309060	+	1	NA	NA	NA	-50	NM_010749	17113	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	0.070000	0.611940	
mm_34075.1	chr4	138457805	138458005	+	1	NA	NA	NA	2757	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.015000	0.398010	
mm_19688.1	chr2	103467116	103467316	-	1	NA	NA	NA	17937	NM_009804	12359	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0.000000	0.412935	8(CCTCTTATACCA,+,0.00)
mm_110414.1	chr12	46698522	46698722	-	1	NA	NA	NA	120153	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.000000	0.507463	
mm_104793.1	chr11	98768131	98768331	-	1	NA	NA	NA	7146	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.070000	0.601990	
mm_106181.1	chr11	116694742	116694942	-	1	NA	NA	NA	-182	NM_009180	20446	Mm.3947	NM_009180	ENSMUSG00000057286	St6galnac2	II|ST6GalNAc|Siat7|Siat7b	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding	0.075000	0.641791	
mm_120105.1	chr14	59201147	59201347	+	1	NA	NA	NA	19	NM_027764	71330	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	0.160000	0.776119	
mm_104817.1	chr11	98968705	98968905	-	1	NA	NA	NA	8334	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.040000	0.597015	
mm_26845.1	chr3	14766513	14766713	-	1	NA	NA	NA	11847	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.010000	0.497512	
mm_90261.1	chr10	122626753	122626953	+	1	NA	NA	NA	-51909	NM_176919	319468	Mm.489703	NM_176919	ENSMUSG00000034613	Ppm1h	A430075L18Rik|ARHCL1|C030002B11Rik	protein phosphatase 1H (PP2C domain containing)	protein-coding	0.005000	0.487562	-33(GACCATAAAAAG,-,0.00),-31(CCATAAAAAGGG,+,0.00)
mm_113442.1	chr13	34924332	34924532	+	1	NA	NA	NA	23	NM_025750	66761	Mm.157047	NM_025750	ENSMUSG00000021415	4933417A18Rik	-	RIKEN cDNA 4933417A18 gene	protein-coding	0.010000	0.482587	
mm_59975.1	chr7	30459596	30459796	+	1	NA	NA	NA	-362	NM_019459	54631	Mm.437830	NM_019459	ENSMUSG00000006649	Nphs1	NephrinB|nephrin	nephrosis 1, nephrin	protein-coding	0.015000	0.582090	
mm_148214.1	chr18	80236250	80236450	-	1	NA	NA	NA	10752	NM_001136181	66255	Mm.272341	NM_001136181	ENSMUSG00000078963	Hsbp1l1	1810005K13Rik	heat shock factor binding protein 1-like 1	protein-coding	0.040000	0.532338	70(ACGTTTAAAAGA,-,0.00)
mm_80276.1	chr9	72995648	72995848	+	1	NA	NA	NA	10244	NM_028181	72278	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	0.000000	0.358209	
mm_93730.1	chr10	119850568	119850768	-	1	NA	NA	NA	1722	NR_131760	78105	Mm.399086	NR_131760	ENSMUSG00000085418	Grip1os1	4930404E01Rik|4930483C13Rik	glutamate receptor interacting protein 1, opposite strand 1	ncRNA	0.000000	0.358209	-6(TCCTTAATAGAG,+,0.00)
mm_49706.1	chr6	34412023	34412223	+	1	NA	NA	NA	-239	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.015000	0.447761	
mm_171682.1	chr4	5704786	5704986	-	1	NA	NA	NA	60707	NM_173426	242297	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0.000000	0.447761	
mm_11996.1	chr2	55597432	55597632	+	1	NA	NA	NA	161562	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.000000	0.358209	
mm_67454.1	chr7	80401652	80401852	-	1	NA	NA	NA	1060	NM_011046	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.015000	0.452736	
mm_20814.1	chr2	144527329	144527529	-	1	NA	NA	NA	-31	NM_172859	241688	Mm.442156	NM_172859	ENSMUSG00000037259	Dzank1	2810039F03Rik|6330439K17Rik|6430408C01|AI851115|Ankrd64	double zinc ribbon and ankyrin repeat domains 1	protein-coding	0.085000	0.641791	
mm_75571.1	chr8	60951817	60952017	-	1	NA	NA	NA	2882	NM_173876	12725	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0.000000	0.318408	
mm_112848.1	chr13	20835979	20836179	+	1	NA	NA	NA	41966	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.333333	75(CTTTTTAAAAGC,+,0.00),75(CTTTTTAAAAGC,-,0.00)
mm_132310.1	chr16	33700612	33700812	+	1	NA	NA	NA	16246	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629|OTTMUSG00000027315	heart development protein with EGF-like domains 1	protein-coding	0.010000	0.532338	
mm_101162.1	chr11	16973128	16973328	-	1	NA	NA	NA	21818	NM_176982	319701	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.000000	0.442786	
mm_132924.1	chr16	49791078	49791278	+	1	NA	NA	NA	-64476	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.010000	0.457711	
mm_139552.1	chr17	56861437	56861637	+	1	NA	NA	NA	12910	NM_001039114	328845	Mm.179421	NM_001039114	ENSMUSG00000024207	Acsbg2	Bgr	acyl-CoA synthetase bubblegum family member 2	protein-coding	0.010000	0.597015	
mm_74377.1	chr8	128685378	128685578	+	1	NA	NA	NA	-176	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.085000	0.691542	
mm_86707.1	chr10	18844962	18845162	+	1	NA	NA	NA	-9	NM_022032	64058	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	0.115000	0.731343	
mm_110315.1	chr12	34212627	34212827	-	1	NA	NA	NA	255056	NM_011658	22160	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	0.005000	0.452736	
mm_37127.1	chr4	116684247	116684447	-	1	NA	NA	NA	-1252	NM_011034	18477	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0.010000	0.417910	
mm_126388.1	chr15	80173695	80173895	+	1	NA	NA	NA	74	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.135000	0.786070	
mm_58715.1	chr7	13010032	13010232	+	1	NA	NA	NA	-332	NM_001024699	232879	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	0.045000	0.467662	
mm_49638.1	chr6	30805071	30805271	+	1	NA	NA	NA	63872	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.462687	
mm_148843.1	chr19	6373551	6373751	+	1	NA	NA	NA	9961	NR_122118	22668	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.015000	0.572139	
mm_88582.1	chr10	79704387	79704587	+	1	NA	NA	NA	129	NM_009768	12215	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	0.145000	0.731343	-12(CTTCTTATAGAG,+,0.00),-10(TCTTATAGAGCC,+,0.00)
mm_120258.1	chr14	63046851	63047051	+	1	NA	NA	NA	-40	NM_001034910	619548	Mm.387101	NM_001034910	ENSMUSG00000054763	Defb42	BD-42|Defb44|mBD-42	defensin beta 42	protein-coding	0.010000	0.562189	
mm_39996.1	chr5	32611120	32611320	+	1	NA	NA	NA	49	NM_009535	22612	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	0.145000	0.776119	
mm_170699.1	chr2	134803797	134803997	+	1	NA	NA	NA	17733	NM_001145830	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding	0.040000	0.462687	
mm_68736.1	chr7	120982228	120982428	-	1	NA	NA	NA	-16	NM_007672	12585	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	0.095000	0.631841	-49(CACTCTATAGGC,-,0.00)
mm_44735.1	chr5	31154129	31154329	-	1	NA	NA	NA	22	NM_001310528	17527	Mm.271923	NM_008622	ENSMUSG00000107283	Mpv17	Tg.Mpv17	MpV17 mitochondrial inner membrane protein	protein-coding	0.050000	0.582090	
mm_95348.1	chr11	48801704	48801904	+	1	NA	NA	NA	-229	NR_028563	100216534		NR_028563	ENSMUSG00000064725	Snord96a	U96	small nucleolar RNA, C/D box 96A	snoRNA	0.045000	0.552239	
mm_74449.1	chr8	4213473	4213673	-	1	NA	NA	NA	3739	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.015000	0.636816	
mm_76148.1	chr8	82340680	82340880	-	1	NA	NA	NA	61806	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.000000	0.363184	
mm_97218.1	chr11	75630925	75631125	+	1	NA	NA	NA	5	NM_008916	19062	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.065000	0.601990	
mm_56534.1	chr6	99594906	99595106	-	1	NA	NA	NA	71765	NM_025829	66892	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.005000	0.472637	
mm_72696.1	chr8	84976620	84976820	+	1	NA	NA	NA	2028	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.065000	0.601990	-98(GCCCATATATGG,-,0.00),-96(CCATATATGGGC,+,0.00)
mm_128010.1	chr15	13173526	13173726	-	1	NA	NA	NA	49	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.025000	0.592040	
mm_66867.1	chr7	57312680	57312880	-	1	NA	NA	NA	74091	NM_008074	14407	Mm.434343	NM_008074	ENSMUSG00000055026	Gabrg3	B230362M20Rik|Gabrg-3	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3	protein-coding	0.005000	0.358209	
mm_145108.1	chr18	44104591	44104791	+	1	NA	NA	NA	168	NM_030061	78242	Mm.99782	NM_030061	ENSMUSG00000061144	Spink12	9230117E20Rik	serine peptidase inhibitor, Kazal type 12	protein-coding	0.010000	0.447761	
mm_7670.1	chr1	128588666	128588866	-	1	NA	NA	NA	3533	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.000000	0.273632	
mm_52316.1	chr6	108836167	108836367	+	1	NA	NA	NA	7626	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.025000	0.457711	
mm_10371.1	chr2	11724270	11724470	+	1	NA	NA	NA	18658	NM_001271500	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.000000	0.402985	
mm_78913.1	chr9	44981756	44981956	+	1	NA	NA	NA	70	NM_013487	12500	Mm.4527	NM_013487	ENSMUSG00000032094	Cd3d	T3d	CD3 antigen, delta polypeptide	protein-coding	0.010000	0.497512	
mm_167138.1	chr7	127478077	127478277	+	1	NA	NA	NA	6563	NM_145589	233895	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.070000	0.597015	
mm_44703.1	chr5	30588668	30588868	-	1	NA	NA	NA	-149	NR_040427	100502829	Mm.39944	NR_040427	ENSMUSG00000053214	Gm9899	ENSMUSG00000053214	predicted gene 9899	ncRNA	0.090000	0.711443	
mm_78774.1	chr9	43743897	43744097	+	1	NA	NA	NA	-579	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	0.110000	0.706468	
mm_35234.1	chr4	19709050	19709250	-	1	NA	NA	NA	-146	NR_074090	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.125000	0.741294	
mm_130326.1	chr15	97680378	97680578	-	1	NA	NA	NA	25344	NM_028003	71919	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.040000	0.597015	
mm_150639.1	chr19	41829910	41830110	+	1	NA	NA	NA	40	NM_008043	14296	Mm.4573	NM_008043	ENSMUSG00000067199	Frat1	AW060382	frequently rearranged in advanced T cell lymphomas	protein-coding	0.125000	0.726368	
mm_145845.1	chr18	65448182	65448382	+	1	NA	NA	NA	17285	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.005000	0.452736	
mm_121314.1	chr14	108929712	108929912	+	1	NA	NA	NA	-15573	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.005000	0.457711	
mm_46991.1	chr5	115334034	115334234	-	1	NA	NA	NA	6957	NR_036616	108014	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0.010000	0.447761	
mm_145165.1	chr18	46741776	46741976	+	1	NA	NA	NA	0	NM_009681	11777	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	0.150000	0.800995	
mm_154615.1	chrX	7657291	7657491	+	1	NA	NA	NA	12	NM_001290624	54630	Mm.232232	NM_175097	ENSMUSG00000031145	Prickle3	Lmo6|Sfc16	prickle planar cell polarity protein 3	protein-coding	0.100000	0.656716	
mm_67690.1	chr7	89510458	89510658	-	1	NA	NA	NA	7028	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.035000	0.562189	-39(CCCTTTATGCCA,+,0.00)
mm_162780.1	chr10	69706079	69706279	+	1	NA	NA	NA	172471	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.035000	0.467662	
mm_125162.1	chr15	31235694	31235894	+	1	NA	NA	NA	11409	NM_146057	223453	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.035000	0.537313	
mm_26622.1	chr3	152477830	152478030	+	1	NA	NA	NA	81246	NM_001287139	108946	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.010000	0.572139	
mm_97249.1	chr11	75751946	75752146	+	1	NA	NA	NA	19159	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.020000	0.388060	81(GAGTATATATGG,-,0.00)
mm_84373.1	chr9	65008370	65008570	-	1	NA	NA	NA	13247	NM_021345	57874	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	0.010000	0.437811	
mm_41733.1	chr5	102691031	102691231	+	1	NA	NA	NA	-77679	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.005000	0.462687	
mm_133187.1	chr16	72663104	72663304	+	1	NA	NA	NA	55	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.075000	0.671642	
mm_13820.1	chr2	119237418	119237618	+	1	NA	NA	NA	158	NM_016907	20732	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	0.150000	0.736318	
mm_126466.1	chr15	81190401	81190601	+	1	NA	NA	NA	256	NM_001082536	223701	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.110000	0.726368	
mm_108561.1	chr12	84756392	84756592	+	1	NA	NA	NA	16620	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.020000	0.447761	
mm_64342.1	chr7	142377235	142377435	+	1	NA	NA	NA	-3589	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.030000	0.562189	
mm_82170.1	chr9	123845359	123845559	+	1	NA	NA	NA	6202	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.010000	0.477612	
mm_107607.1	chr12	49384417	49384617	+	1	NA	NA	NA	1510	NM_008241	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.110000	0.686567	
mm_71622.1	chr8	57340880	57341080	+	1	NA	NA	NA	8545	NR_131041	75996	Mm.399754	NR_131041	ENSMUSG00000097910	5033428I22Rik	-	RIKEN cDNA 5033428I22 gene	ncRNA	0.070000	0.656716	
mm_2628.1	chr1	121049733	121049933	+	1	NA	NA	NA	-37572	NR_038008	98452	Mm.131017	NR_038008	ENSMUSG00000097881	Celrr	AI848258|B230209K01Rik|Celr|Gm818	cerebellum expressed regulatory RNA	ncRNA	0.010000	0.502488	
mm_123782.1	chr14	70331368	70331568	-	1	NA	NA	NA	16965	NM_001135152	213053	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0.015000	0.517413	
mm_3968.1	chr1	164151793	164151993	+	1	NA	NA	NA	58	NM_007976	14067	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	0.035000	0.616915	
mm_165963.1	chr4	94331555	94331755	-	1	NA	NA	NA	225141	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.015000	0.477612	
mm_25297.1	chr3	105914043	105914243	+	1	NA	NA	NA	9722	NM_009631	11542	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0.015000	0.487562	
mm_125537.1	chr15	58040275	58040475	+	1	NA	NA	NA	-6081	NM_029418	75758	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.010000	0.353234	
mm_81699.1	chr9	111211314	111211514	+	1	NA	NA	NA	60194	NM_026810	17350	Mm.486383	NM_026810	ENSMUSG00000032498	Mlh1	1110035C23Rik|AI317206|AI325952|AI561766	mutL homolog 1	protein-coding	0.020000	0.477612	
mm_65772.1	chr7	28761740	28761940	-	1	NA	NA	NA	4804	NM_001306222	18036	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	0.040000	0.611940	
mm_18109.1	chr2	44989705	44989905	-	1	NA	NA	NA	33372	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.015000	0.457711	
mm_172591.1	chr8	126945714	126945914	-	1	NA	NA	NA	107	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.165000	0.761194	
mm_122460.1	chr14	45444867	45445067	-	1	NA	NA	NA	-56171	NM_019425	54342	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding	0.015000	0.562189	
mm_26430.1	chr3	142618407	142618607	+	1	NA	NA	NA	-2156	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.005000	0.348259	
mm_83590.1	chr9	48480374	48480574	-	1	NA	NA	NA	137	NM_024233	104444	Mm.21911	NM_024233	ENSMUSG00000032026	Rexo2	1810038D15Rik|AW107347|Rex2|Sfn|Smfn	RNA exonuclease 2	protein-coding	0.105000	0.721393	
mm_54104.1	chr6	16898269	16898469	-	1	NA	NA	NA	72	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.020000	0.442786	
mm_119871.1	chr14	54686116	54686316	+	1	NA	NA	NA	45	NM_021437	58248	Mm.197509	NM_021437	ENSMUSG00000040822	1700123O20Rik	MNCb-2990	RIKEN cDNA 1700123O20 gene	protein-coding	0.075000	0.606965	
mm_88072.1	chr10	67909154	67909354	+	1	NA	NA	NA	3408	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0.045000	0.577114	
mm_81999.1	chr9	121642676	121642876	+	1	NA	NA	NA	60	NM_011703	22354	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding	0.120000	0.756219	
mm_145964.1	chr18	67794356	67794556	+	1	NA	NA	NA	5487	NR_045376	75286	Mm.307315	NR_045376		4930549G23Rik	-	RIKEN cDNA 4930549G23 gene	ncRNA	0.005000	0.323383	
mm_161575.1	chr16	23429091	23429291	+	1	NA	NA	NA	58	NM_001004151	239766	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0.030000	0.547264	51(TTCTCTATAAAG,-,0.00)
mm_6531.1	chr1	74749347	74749547	-	1	NA	NA	NA	-492	NM_153744	241113	Mm.166501	NM_153744	ENSMUSG00000006542	Prkag3	AMPKg3L|AMPKg3S|Amkg3|Ampkg3	protein kinase, AMP-activated, gamma 3 non-catatlytic subunit	protein-coding	0.020000	0.587065	
mm_24812.1	chr3	95588940	95589140	+	1	NA	NA	NA	106	NM_001177670	229593	Mm.245830	NM_146133	ENSMUSG00000046519	Golph3l	2010204I15Rik|AU015439|AW549227|C77637|Gpp34r	golgi phosphoprotein 3-like	protein-coding	0.040000	0.542289	
mm_12445.1	chr2	71117950	71118150	+	1	NA	NA	NA	-4	NM_028593	73649	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	0.090000	0.721393	
mm_26855.1	chr3	14863145	14863345	-	1	NA	NA	NA	-293	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.025000	0.621891	
mm_78209.1	chr9	21490424	21490624	+	1	NA	NA	NA	6040	NR_029585	387194		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.010000	0.368159	
mm_159208.1	chr2	121764982	121765182	-	1	NA	NA	NA	41975	NM_172673	228564	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|5830442F04|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	0.015000	0.432836	
mm_34234.1	chr4	141099691	141099891	+	1	NA	NA	NA	11446	NM_177867	329972	Mm.247201	NM_177867	ENSMUSG00000045004	Spata21	4933414G08	spermatogenesis associated 21	protein-coding	0.010000	0.417910	
mm_170405.1	chr18	65103945	65104145	-	1	NA	NA	NA	80518	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.005000	0.462687	
mm_143323.1	chr17	66349570	66349770	-	1	NA	NA	NA	100080	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.020000	0.353234	
mm_119498.1	chr14	47380069	47380269	+	1	NA	NA	NA	6309	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.010000	0.666667	
mm_1101.1	chr1	59763416	59763616	+	1	NA	NA	NA	-763	NM_007561	12168	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0.115000	0.746269	
mm_87546.1	chr10	53596968	53597168	+	1	NA	NA	NA	107	NM_025541	66403	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0.115000	0.621891	
mm_130488.1	chr15	98763133	98763333	-	1	NA	NA	NA	-115	NM_007478	11842	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	0.105000	0.681592	
mm_110003.1	chr12	15816722	15816922	-	1	NA	NA	NA	-37	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.135000	0.671642	
mm_61268.1	chr7	66174639	66174839	+	1	NA	NA	NA	65224	NM_001081163	269941	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.005000	0.537313	
mm_115532.1	chr13	6404623	6404823	-	1	NA	NA	NA	-143434	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.015000	0.393035	
mm_37940.1	chr4	133070780	133070980	-	1	NA	NA	NA	59374	NM_146155	230793	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.010000	0.512438	
mm_165588.1	chr3	32905615	32905815	+	1	NA	NA	NA	79364	NM_001163517	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.000000	0.373134	
mm_98134.1	chr11	87566559	87566759	+	1	NA	NA	NA	-11730	NM_001284398	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding	0.000000	0.412935	-17(CCTTTTATGACA,+,0.00)
mm_39037.1	chr4	152317719	152317919	-	1	NA	NA	NA	806	NM_001033489	433809	Mm.156205	NM_001033489	ENSMUSG00000058498	Rnf207	D330010C22Rik|Gm143	ring finger protein 207	protein-coding	0.010000	0.552239	
mm_139493.1	chr17	56162418	56162618	+	1	NA	NA	NA	27	NM_025566	66443	Mm.2312	NM_025566	ENSMUSG00000044469	Tnfaip8l1	2600017J23Rik|TIPE1	tumor necrosis factor, alpha-induced protein 8-like 1	protein-coding	0.055000	0.626866	
mm_36508.1	chr4	83486159	83486359	-	1	NA	NA	NA	189	NM_001290527	101739	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	0.150000	0.815920	
mm_128133.1	chr15	31448952	31449152	-	1	NA	NA	NA	4637	NM_145852	252967	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.020000	0.457711	
mm_83206.1	chr9	41933952	41934152	-	1	NA	NA	NA	190237	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.020000	0.542289	
mm_3783.1	chr1	156674892	156675092	+	1	NA	NA	NA	-653	NM_023141	30935	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.015000	0.477612	
mm_54416.1	chr6	32752190	32752390	-	1	NA	NA	NA	-164098	NM_175750	243743	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0.000000	0.417910	
mm_110337.1	chr12	36019584	36019784	-	1	NA	NA	NA	22794	NM_025359	66109	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0.015000	0.497512	-39(GCATTTATATCC,+,0.00)
mm_156993.1	chrX	7422836	7423036	-	1	NA	NA	NA	52	NR_027924	68355	Mm.45111	NR_027924		2010204K13Rik	0610010M13Rik|Cip7	RIKEN cDNA 2010204K13 gene	ncRNA	0.045000	0.457711	
mm_4811.1	chr1	185356940	185357140	+	1	NA	NA	NA	-6055	NM_029735	107508	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	0.000000	0.273632	
mm_138587.1	chr17	35506149	35506349	+	1	NA	NA	NA	217	NM_013633	18999	Mm.17031	NM_013633	ENSMUSG00000024406	Pou5f1	NF-A3|Oct-3|Oct-3/4|Oct-4|Oct3|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4	POU domain, class 5, transcription factor 1	protein-coding	0.035000	0.631841	
mm_102314.1	chr11	56269858	56270058	-	1	NA	NA	NA	-228971	NM_153079	216749	Mm.213205	NM_153079	ENSMUSG00000037393	Nmur2	Nmu2r	neuromedin U receptor 2	protein-coding	0.010000	0.487562	
mm_69317.1	chr7	128461220	128461420	-	1	NA	NA	NA	193	NM_009383	21843	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.080000	0.706468	
mm_66293.1	chr7	38019383	38019583	-	1	NA	NA	NA	69	NM_011274	19777	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	0.185000	0.791045	
mm_65614.1	chr7	27532371	27532571	-	1	NA	NA	NA	9210	NM_001033315	233020	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.015000	0.592040	
mm_45026.1	chr5	38563148	38563348	-	1	NA	NA	NA	-1653	NM_011715	22388	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0.000000	0.442786	
mm_166027.1	chr4	125146162	125146362	+	1	NA	NA	NA	-18381	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.010000	0.592040	
mm_167187.1	chr7	142471344	142471544	+	1	NA	NA	NA	-399	NM_001271508	16985	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.005000	0.626866	
mm_60947.1	chr7	47008454	47008654	+	1	NA	NA	NA	-140	NM_175318	101685	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.055000	0.621891	
mm_63696.1	chr7	130624533	130624733	+	1	NA	NA	NA	47149	NM_206856	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.010000	0.567164	
mm_66115.1	chr7	31042219	31042419	-	1	NA	NA	NA	12	NM_008761	18301	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	0.020000	0.626866	
mm_40338.1	chr5	44224410	44224610	+	1	NA	NA	NA	2096	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.015000	0.487562	
mm_125039.1	chr15	25774094	25774294	+	1	NA	NA	NA	-69104	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.015000	0.467662	-31(CTTTTTAAAGCA,+,0.00)
mm_141875.1	chr17	34839339	34839539	-	1	NA	NA	NA	2420	NM_001163770	112403	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	0.050000	0.547264	
mm_141467.1	chr17	30597794	30597994	-	1	NA	NA	NA	14765	NM_025374	109801	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding	0.030000	0.532338	
mm_70666.1	chr8	14888789	14888989	+	1	NA	NA	NA	353	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.075000	0.651741	
mm_49726.1	chr6	34685000	34685200	+	1	NA	NA	NA	-24344	NM_145575	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.025000	0.552239	-13(CGCCTTAAATGC,-,0.00),-11(CCTTAAATGCCA,+,0.00)
mm_15792.1	chr2	164425797	164425997	+	1	NA	NA	NA	17291	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.000000	0.477612	
mm_1670.1	chr1	74791659	74791859	+	1	NA	NA	NA	-260	NM_009518	22409	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0.080000	0.716418	
mm_13130.1	chr2	91774215	91774415	+	1	NA	NA	NA	44177	NM_001080754	228361	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	0.005000	0.283582	
mm_137959.1	chr17	33139404	33139604	+	1	NA	NA	NA	179	NM_177719	240069	Mm.157765	NM_177719	ENSMUSG00000048602	Morc2b	4932411A10Rik|Tce6	microrchidia 2B	protein-coding	0.015000	0.532338	
mm_63302.1	chr7	126823730	126823930	+	1	NA	NA	NA	527	NM_029978	68952	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0.015000	0.601990	
mm_96855.1	chr11	70054326	70054526	+	1	NA	NA	NA	71	NM_001291132	11889	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.020000	0.606965	
mm_102078.1	chr11	52275428	52275628	-	1	NA	NA	NA	7067	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.015000	0.547264	
mm_104913.1	chr11	99710173	99710373	-	1	NA	NA	NA	-44313	NM_026834	68768	Mm.416844	NM_026834	ENSMUSG00000075566	Krtap4-6	1110054P19Rik	keratin associated protein 4-6	protein-coding	0.000000	0.502488	-34(GGGTATAAAAGC,-,0.00)
mm_42309.1	chr5	114851872	114852072	+	1	NA	NA	NA	24	NR_105748	102466620		NR_105748	ENSMUSG00000098343	Mir6240	Gm27850|mmu-mir-6240	microRNA 6240	ncRNA	0.025000	0.487562	
mm_147628.1	chr18	58209962	58210162	-	1	NA	NA	NA	-136	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.115000	0.681592	
mm_40754.1	chr5	66890173	66890373	+	1	NA	NA	NA	-78143	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.055000	0.557214	
mm_38758.1	chr4	147868515	147868715	-	1	NA	NA	NA	104	NM_001025365	28010	Mm.250504	NM_133873	ENSMUSG00000029022	Miip	AA553001|AI853621|D4Wsu114e|IIP45	migration and invasion inhibitory protein	protein-coding	0.055000	0.587065	
mm_78878.1	chr9	44487148	44487348	+	1	NA	NA	NA	-11888	NM_030256	80288	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.035000	0.512438	
mm_21449.1	chr2	160646467	160646667	-	1	NA	NA	NA	670	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.110000	0.701493	
mm_20278.1	chr2	126890614	126890814	-	1	NA	NA	NA	11671	NR_106202	102466258		NR_106202	ENSMUSG00000098896	Mir3473g	Gm27751|mmu-mir-3473g	microRNA 3473g	ncRNA	0.000000	0.323383	
mm_33887.1	chr4	136178147	136178347	+	1	NA	NA	NA	-2535	NM_001305399	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.020000	0.597015	
mm_114894.1	chr13	94388790	94388990	+	1	NA	NA	NA	29930	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.000000	0.412935	
mm_165004.1	chr19	22767856	22768056	+	1	NA	NA	NA	17351	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.005000	0.383085	
mm_93041.1	chr10	88357368	88357568	-	1	NA	NA	NA	-393	NM_027878	71712	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.030000	0.572139	
mm_71831.1	chr8	68896685	68896885	+	1	NA	NA	NA	16230	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.010000	0.487562	
mm_10030.1	chr1	192137814	192138014	-	1	NA	NA	NA	126	NM_001290278	214742	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	0.105000	0.706468	
mm_116187.1	chr13	31240980	31241180	-	1	NA	NA	NA	6	NR_045957	73924	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	0.010000	0.383085	
mm_9645.1	chr1	177258098	177258298	-	1	NA	NA	NA	-9431	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.085000	0.786070	
mm_127231.1	chr15	99405814	99406014	+	1	NA	NA	NA	12695	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.060000	0.606965	
mm_150976.1	chr19	46501656	46501856	+	1	NA	NA	NA	108	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.085000	0.651741	
mm_2427.1	chr1	95498686	95498886	+	1	NA	NA	NA	168808	NM_009183	20452	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.035000	0.527363	
mm_148042.1	chr18	70462745	70462945	-	1	NA	NA	NA	-9609	NM_029019	170461	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	0.005000	0.417910	
mm_110934.1	chr12	76370864	76371064	-	1	NA	NA	NA	698	NM_178744	268564	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.100000	0.666667	
mm_155394.1	chrX	72918497	72918697	+	1	NA	NA	NA	76	NM_010941	18194	Mm.38792	NM_010941	ENSMUSG00000031349	Nsdhl	AI747449|Bpa|H105E3|Str|XAP104	NAD(P) dependent steroid dehydrogenase-like	protein-coding	0.030000	0.492537	7(CAGTAGAAAAGG,-,0.00)
mm_132829.1	chr16	45244878	45245078	+	1	NA	NA	NA	20641	NM_177584	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.000000	0.363184	
mm_149861.1	chr19	25107708	25107908	+	1	NA	NA	NA	108279	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.015000	0.412935	
mm_131199.1	chr16	8618799	8618999	+	1	NA	NA	NA	18802	NM_025708	66690	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	0.015000	0.497512	
mm_50452.1	chr6	48906004	48906204	+	1	NA	NA	NA	1118	NM_001161621	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.040000	0.597015	
mm_42031.1	chr5	108367653	108367853	+	1	NA	NA	NA	-20620	NM_008806	18587	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0.190000	0.830846	
mm_69414.1	chr7	132576266	132576466	-	1	NA	NA	NA	32	NM_016978	18242	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0.115000	0.636816	
mm_131359.1	chr16	13754491	13754691	+	1	NA	NA	NA	-24107	NM_011987	26565	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	0.075000	0.646766	
mm_85787.1	chr9	109073995	109074195	-	1	NA	NA	NA	29	NM_172774	235610	Mm.100622	NM_172774	ENSMUSG00000025646	Atrip	6620401K05Rik	ATR interacting protein	protein-coding	0.095000	0.666667	
mm_149336.1	chr19	10850165	10850365	+	1	NA	NA	NA	7721	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.010000	0.477612	
mm_169486.1	chr14	73797201	73797401	-	1	NA	NA	NA	244515	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	0.050000	0.487562	
mm_128988.1	chr15	74834595	74834795	-	1	NA	NA	NA	6948	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.000000	0.447761	-97(GGGTTTTAAAGC,-,0.00)
mm_157966.1	chrX	90744877	90745077	-	1	NA	NA	NA	-147165	NM_001101450	212952	Mm.477436	NM_001101450	ENSMUSG00000091497	Gm44	-	predicted gene 44	protein-coding	0.010000	0.477612	
mm_15316.1	chr2	155611143	155611343	+	1	NA	NA	NA	0	NM_001085378	668940	Mm.469980	NM_001085378	ENSMUSG00000074652	Myh7b	Myh14	myosin, heavy chain 7B, cardiac muscle, beta	protein-coding	0.015000	0.592040	
mm_129741.1	chr15	82222890	82223090	-	1	NA	NA	NA	1346	NM_028075	72049	Mm.240047	NM_028075	ENSMUSG00000068105	Tnfrsf13c	2010006P15Rik|BAFF-R|Baffr|Bcmd|Bcmd-1|Bcmd1|Lvis22	tumor necrosis factor receptor superfamily, member 13c	protein-coding	0.020000	0.527363	84(TGGTTTTTAAGC,-,0.00)
mm_37572.1	chr4	126242172	126242372	-	1	NA	NA	NA	14047	NM_144941	245877	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0.030000	0.606965	
mm_93792.1	chr10	120781956	120782156	-	1	NA	NA	NA	16324	NR_038003	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.000000	0.452736	
mm_112279.1	chr12	114358186	114358386	-	1	NA	NA	NA	111180	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.000000	0.393035	
mm_12459.1	chr2	71334126	71334326	+	1	NA	NA	NA	33328	NM_172436	78830	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.020000	0.482587	
mm_1911.1	chr1	85906915	85907115	+	1	NA	NA	NA	12505	NM_022417	64294	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.015000	0.567164	
mm_38363.1	chr4	138138393	138138593	-	1	NA	NA	NA	25	NR_126429	73563	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	0.010000	0.527363	
mm_134466.1	chr16	18426463	18426663	-	1	NA	NA	NA	146	NM_013711	26462	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0.135000	0.746269	
mm_337.1	chr1	29978926	29979126	+	1	NA	NA	NA	557538	NR_105760	102465174		NR_105760	ENSMUSG00000099257	Mir6342	Gm27268|mmu-mir-6342	microRNA 6342	ncRNA	0.035000	0.467662	-34(CTGCATAAAAAG,-,0.00)
mm_143944.1	chr17	86710390	86710590	-	1	NA	NA	NA	-43374	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.035000	0.527363	
mm_24094.1	chr3	88030758	88030958	+	1	NA	NA	NA	-3347	NM_022031	73940	Mm.294467	NM_022031	ENSMUSG00000004894	Hapln2	4930401E20Rik|Bral1	hyaluronan and proteoglycan link protein 2	protein-coding	0.030000	0.562189	
mm_162375.1	chr1	69871036	69871236	-	1	NA	NA	NA	44166	NM_001271533	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	0.005000	0.432836	
mm_11566.1	chr2	32877947	32878147	+	1	NA	NA	NA	1913	NM_146119	227737	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.010000	0.537313	
mm_128423.1	chr15	46496057	46496257	-	1	NA	NA	NA	22	NR_040451	74726	Mm.78172	NR_040451		4930523O13Rik	4921524H24Rik	RIKEN cDNA 4930523O13 gene	ncRNA	0.020000	0.497512	
mm_66327.1	chr7	42642492	42642692	-	1	NA	NA	NA	12	NM_001242388	208111	Mm.387841	NM_001034857	ENSMUSG00000074158	Zfp976	9830147E19Rik|C330019L16Rik	zinc finger protein 976	protein-coding	0.030000	0.547264	
mm_33041.1	chr4	122935166	122935366	+	1	NA	NA	NA	25922	NM_029662	76574	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.015000	0.457711	
mm_33130.1	chr4	124881711	124881911	+	1	NA	NA	NA	26	NM_177671	230735	Mm.171490	NM_177671	ENSMUSG00000028876	Epha10	A330090H18	Eph receptor A10	protein-coding	0.090000	0.696517	
mm_125244.1	chr15	34453194	34453394	+	1	NA	NA	NA	-18	NM_173421	239368	Mm.211977	NM_173421	ENSMUSG00000044726	Erich5	-	glutamate rich 5	protein-coding	0.035000	0.567164	-35(AGCTATTTAGGG,-,0.00)
mm_132991.1	chr16	52829034	52829234	+	1	NA	NA	NA	-13390	NR_040495	73820	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0.005000	0.507463	
mm_121454.1	chr14	120478433	120478633	+	1	NA	NA	NA	72	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.160000	0.776119	
mm_158690.1	chrX	160906906	160907106	-	1	NA	NA	NA	46	NM_001001496	414089	Mm.123113	NM_001001496	ENSMUSG00000055691	Gja6	A530015O12Rik|Cnx33|Cx33|Gja-6	gap junction protein, alpha 6	protein-coding	0.010000	0.467662	
mm_123067.1	chr14	55681409	55681609	-	1	NA	NA	NA	308	NM_145705	28113	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0.100000	0.676617	
mm_80117.1	chr9	70542951	70543151	+	1	NA	NA	NA	181	NM_025690	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.125000	0.676617	
mm_171211.1	chr3	5860387	5860587	+	1	NA	NA	NA	-284239	NM_001163305	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.055000	0.492537	
mm_20183.1	chr2	122599585	122599785	-	1	NA	NA	NA	11592	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.015000	0.417910	
mm_171135.1	chr3	149052594	149052794	+	1	NA	NA	NA	-98059	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.000000	0.512438	
mm_25627.1	chr3	118979953	118980153	+	1	NA	NA	NA	417875	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.000000	0.313433	
mm_64554.1	chr7	144582047	144582247	+	1	NA	NA	NA	289	NM_010175	14082	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	0.105000	0.736318	
mm_94024.1	chr10	127667557	127667757	-	1	NA	NA	NA	534	NR_045171	72243	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0.040000	0.572139	
mm_91468.1	chr10	34186391	34186591	-	1	NA	NA	NA	21060	NM_172508	212898	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.015000	0.512438	
mm_53995.1	chr6	6881897	6882097	-	1	NA	NA	NA	71	NM_198854	13395	Mm.4873	NM_010056	ENSMUSG00000029755	Dlx5	AI385752	distal-less homeobox 5	protein-coding	0.065000	0.676617	
mm_152929.1	chr19	28283772	28283972	-	1	NA	NA	NA	-272706	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.020000	0.517413	
mm_25007.1	chr3	97658485	97658685	+	1	NA	NA	NA	373	NM_182997	108097	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.110000	0.746269	
mm_122497.1	chr14	46673728	46673928	-	1	NA	NA	NA	-53	NR_131909	328385	Mm.271545	NR_131909		D330046F09Rik	Gm808	RIKEN cDNA D330046F09 gene	ncRNA	0.015000	0.442786	
mm_21982.1	chr2	167485554	167485754	-	1	NA	NA	NA	-6991	NM_030743	81018	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.005000	0.547264	
mm_24492.1	chr3	92365086	92365286	+	1	NA	NA	NA	-1	NM_011472	20760	Mm.10692	NM_011472	ENSMUSG00000050635	Sprr2f	-	small proline-rich protein 2F	protein-coding	0.010000	0.462687	
mm_137210.1	chr17	24151995	24152195	+	1	NA	NA	NA	-1173	NM_001286662	18607	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	0.045000	0.636816	
mm_125806.1	chr15	74926019	74926219	+	1	NA	NA	NA	-28932	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.015000	0.432836	
mm_118276.1	chr13	112652148	112652348	-	1	NA	NA	NA	62	NM_010029	13206	Mm.12818	NM_010029	ENSMUSG00000021758	Ddx4	AV206478|Mvh|VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding	0.115000	0.776119	
mm_42457.1	chr5	115435390	115435590	+	1	NA	NA	NA	5805	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.030000	0.552239	
mm_155672.1	chrX	90744677	90744877	+	1	NA	NA	NA	-147365	NM_001101450	212952	Mm.477436	NM_001101450	ENSMUSG00000091497	Gm44	-	predicted gene 44	protein-coding	0.005000	0.472637	
mm_75754.1	chr8	69903090	69903290	-	1	NA	NA	NA	-632	NM_023312	67184	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.140000	0.751244	
mm_63073.1	chr7	122208536	122208736	+	1	NA	NA	NA	-10860	NM_027363	70261	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.010000	0.482587	
mm_42472.1	chr5	115454469	115454669	+	1	NA	NA	NA	-11697	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.010000	0.562189	
mm_107611.1	chr12	49384907	49385107	+	1	NA	NA	NA	2000	NM_008241	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.085000	0.621891	
mm_78121.1	chr9	20644245	20644445	+	1	NA	NA	NA	422	NM_001286529	30843	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding	0.045000	0.472637	
mm_32920.1	chr4	119136742	119136942	+	1	NA	NA	NA	28097	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.030000	0.587065	
mm_94508.1	chr11	7207273	7207473	+	1	NA	NA	NA	6550	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding	0.000000	0.368159	
mm_111893.1	chr12	108488993	108489193	-	1	NA	NA	NA	-65627	NM_001163394	14026	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.025000	0.457711	
mm_32386.1	chr4	106581695	106581895	+	1	NA	NA	NA	20757	NM_053272	74754	Mm.133370	NM_053272	ENSMUSG00000034926	Dhcr24	2310076D10Rik|5830417J06Rik|mKIAA0018	24-dehydrocholesterol reductase	protein-coding	0.020000	0.462687	
mm_26096.1	chr3	136902982	136903182	+	1	NA	NA	NA	233016	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.060000	0.527363	
mm_77130.1	chr8	111338328	111338528	-	1	NA	NA	NA	-223	NM_029005	74568	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0.010000	0.388060	
mm_42816.1	chr5	121848895	121849095	+	1	NA	NA	NA	-33	NM_175474	231717	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.110000	0.736318	
mm_167285.1	chr8	40511123	40511323	-	1	NA	NA	NA	531	NM_001271543	18983	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0.070000	0.621891	
mm_54968.1	chr6	48736944	48737144	-	1	NA	NA	NA	-2003	NM_175860	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.000000	0.398010	
mm_19574.1	chr2	101643494	101643694	-	1	NA	NA	NA	5938	NM_009019	19373	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0.025000	0.467662	
mm_2034.1	chr1	87213814	87214014	+	1	NA	NA	NA	0	NM_023314	26987	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0.105000	0.671642	
mm_145018.1	chr18	38714424	38714624	+	1	NA	NA	NA	-113256	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.020000	0.517413	
mm_106233.1	chr11	117421060	117421260	-	1	NA	NA	NA	557	NR_136918	667423	Mm.383716	NR_136918	ENSMUSG00000083705	Gm8624	EG667423	ribosomal protein S23 pseudogene	pseudo	0.040000	0.482587	
mm_62179.1	chr7	97451205	97451405	+	1	NA	NA	NA	-29	NM_001136235	233529	Mm.334033	NM_001010826	ENSMUSG00000051727	Kctd14	AI449310|D7Ertd760e	potassium channel tetramerisation domain containing 14	protein-coding	0.000000	0.447761	
mm_152353.1	chr19	10001504	10001704	-	1	NA	NA	NA	29	NM_011913	24115	Mm.31577	NM_011913	ENSMUSG00000037418	Best1	Bmd|Vmd2|mBest1	bestrophin 1	protein-coding	0.005000	0.537313	
mm_93617.1	chr10	117277406	117277606	-	1	NA	NA	NA	4766	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.015000	0.457711	
mm_32645.1	chr4	115057560	115057760	+	1	NA	NA	NA	-151	NM_001287388	21349	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.060000	0.631841	
mm_35841.1	chr4	48048956	48049156	-	1	NA	NA	NA	-2190	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.075000	0.666667	
mm_95346.1	chr11	48800292	48800492	+	1	NA	NA	NA	32	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.080000	0.611940	
mm_16942.1	chr2	15049021	15049221	-	1	NA	NA	NA	191	NM_001165942	74455	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	0.035000	0.492537	
mm_126668.1	chr15	84324651	84324851	+	1	NA	NA	NA	31	NM_022321	64099	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0.025000	0.542289	
mm_73173.1	chr8	95049899	95050099	+	1	NA	NA	NA	-5104	NM_001042715	330830	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.000000	0.482587	-32(CCCTATAAGAAG,-,0.00)
mm_70336.1	chr8	4524529	4524729	+	1	NA	NA	NA	31224	NM_026058	67260	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0.000000	0.447761	
mm_162188.1	chrX	105764311	105764511	+	1	NA	NA	NA	-66	NM_030614	80903	Mm.154768	NM_030614	ENSMUSG00000031230	Fgf16	-	fibroblast growth factor 16	protein-coding	0.145000	0.721393	
mm_39721.1	chr5	28165604	28165804	+	1	NA	NA	NA	8	NM_010134	13799	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	0.100000	0.626866	
mm_130487.1	chr15	98763108	98763308	-	1	NA	NA	NA	-90	NM_007478	11842	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	0.110000	0.696517	
mm_47966.1	chr5	135744139	135744339	-	1	NA	NA	NA	-67	NM_172541	215210	Mm.11688	NM_172541	ENSMUSG00000039886	Tmem120a	2010310D06Rik|Tmpit	transmembrane protein 120A	protein-coding	0.130000	0.741294	
mm_31144.1	chr4	43383423	43383623	+	1	NA	NA	NA	1541	NM_001037709	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.035000	0.497512	51(GTTTTTATATGC,+,0.00)
mm_151601.1	chr19	3549325	3549525	-	1	NA	NA	NA	26324	NM_001164159	52036	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.005000	0.427861	
mm_146224.1	chr18	77065486	77065686	+	1	NA	NA	NA	-94	NM_001164170	17344	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0.190000	0.810945	
mm_67479.1	chr7	80688788	80688988	-	1	NA	NA	NA	-11	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.175000	0.835821	
mm_20839.1	chr2	147431307	147431507	-	1	NA	NA	NA	66413	NM_008780	18503	Mm.315502	NM_008780	ENSMUSG00000037034	Pax1	Pax-1|hbs|hunchback|un|undulated|wt	paired box 1	protein-coding	0.000000	0.333333	
mm_65486.1	chr7	25675044	25675244	-	1	NA	NA	NA	22	NM_001290497	320208	Mm.207484	NM_177102	ENSMUSG00000061702	Tmem91	A830041P22Rik|DSPC3	transmembrane protein 91	protein-coding	0.075000	0.696517	
mm_59274.1	chr7	24904145	24904345	+	1	NA	NA	NA	-101	NM_001130152	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.075000	0.651741	
mm_27587.1	chr3	59130437	59130637	-	1	NA	NA	NA	225	NM_001008497	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.025000	0.522388	
mm_134690.1	chr16	22504589	22504789	-	1	NA	NA	NA	-6791	NR_130988	78082	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	0.005000	0.477612	30(TCCTTTTTAAGG,-,0.00),32(CTTTTTAAGGGT,+,0.00)
mm_122845.1	chr14	54726722	54726922	-	1	NA	NA	NA	-14648	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.015000	0.507463	
mm_131480.1	chr16	17146862	17147062	+	1	NA	NA	NA	-5	NM_026940	69101	Mm.101656	NM_026940	ENSMUSG00000041774	Ydjc	1810015A11Rik|4930521M19Rik	YdjC homolog (bacterial)	protein-coding	0.090000	0.636816	
mm_168733.1	chr12	114616222	114616422	-	1	NA	NA	NA	-102628	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.005000	0.432836	
mm_112572.1	chr13	13590273	13590473	+	1	NA	NA	NA	-36	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.095000	0.721393	
mm_159529.1	chr4	62559693	62559893	+	1	NA	NA	NA	-54	NM_019492	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.010000	0.497512	
mm_30609.1	chr4	6509844	6510044	+	1	NA	NA	NA	-55673	NM_010945	18201	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.000000	0.383085	
mm_26291.1	chr3	142506745	142506945	+	1	NA	NA	NA	9911	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.020000	0.517413	
mm_37886.1	chr4	132510401	132510601	-	1	NA	NA	NA	-45	NM_144907	230784	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0.095000	0.701493	
mm_123374.1	chr14	63245142	63245342	-	1	NA	NA	NA	29	NM_008092	14463	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0.110000	0.711443	
mm_9309.1	chr1	171641021	171641221	-	1	NA	NA	NA	779	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.020000	0.402985	
mm_72202.1	chr8	72571992	72572192	+	1	NA	NA	NA	-11	NM_144534	74166	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	0.105000	0.721393	
mm_165240.1	chr2	62412102	62412302	-	1	NA	NA	NA	29	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.015000	0.517413	
mm_67529.1	chr7	81213561	81213761	-	1	NA	NA	NA	-143	NM_008803	18584	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.165000	0.756219	
mm_141937.1	chr17	35047641	35047841	-	1	NA	NA	NA	-996	NM_001146215	17687	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	0.005000	0.437811	
mm_91872.1	chr10	59582826	59583026	-	1	NA	NA	NA	33766	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.015000	0.398010	
mm_118901.1	chr14	26649148	26649348	+	1	NA	NA	NA	11051	NM_007479	11843	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.015000	0.383085	
mm_127374.1	chr15	100790750	100790950	+	1	NA	NA	NA	9596	NM_001347102	59033	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0.060000	0.512438	71(GCATATAAAGCA,+,0.00)
mm_152996.1	chr19	29865140	29865340	-	1	NA	NA	NA	-52266	NM_177721	240614	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	0.005000	0.507463	-25(GCTTTAATACTC,+,0.00)
mm_20169.1	chr2	122305576	122305776	-	1	NA	NA	NA	6776	NM_025777	66811	Mm.171333	NM_025777	ENSMUSG00000027225	Duoxa2	9030623N16Rik|Nip2	dual oxidase maturation factor 2	protein-coding	0.025000	0.547264	
mm_147041.1	chr18	34886566	34886766	-	1	NA	NA	NA	25459	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.000000	0.517413	
mm_156235.1	chrX	135885903	135886103	+	1	NA	NA	NA	152	NM_198161	70237	Mm.440847	NM_198161	ENSMUSG00000072964	Bhlhb9	2700087I09Rik	basic helix-loop-helix domain containing, class B9	protein-coding	0.085000	0.691542	
mm_61766.1	chr7	82867112	82867312	+	1	NA	NA	NA	-121	NM_175366	108797	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0.065000	0.661692	
mm_68591.1	chr7	116034508	116034708	-	1	NA	NA	NA	-3561	NM_001025560	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.035000	0.636816	
mm_143778.1	chr17	81712932	81713132	-	1	NA	NA	NA	25355	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.283582	
mm_42047.1	chr5	108517036	108517236	+	1	NA	NA	NA	32891	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.040000	0.502488	
mm_31736.1	chr4	63152482	63152682	+	1	NA	NA	NA	1590	NM_007443	11699	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.030000	0.597015	
mm_155991.1	chrX	106146547	106146747	+	1	NA	NA	NA	3372	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.005000	0.422886	
mm_50711.1	chr6	52172781	52172981	+	1	NA	NA	NA	7207	NR_131182	105242657	Mm.490651	NR_131182	ENSMUSG00000056445	Hoxaas2	2810043O09Rik|5730446D14Rik	Hoxa cluster antisense RNA 2	ncRNA	0.050000	0.497512	-32(AGCCATAAAAGA,-,0.00),34(CACTATAAAAAG,-,0.00)
mm_126039.1	chr15	76904197	76904397	+	1	NA	NA	NA	226	NM_012053	26961	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0.095000	0.636816	
mm_69321.1	chr7	128461501	128461701	-	1	NA	NA	NA	72	NM_001347641	21843	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.065000	0.611940	
mm_145957.1	chr18	67774699	67774899	+	1	NA	NA	NA	-77	NM_028112	72124	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	0.105000	0.666667	
mm_115371.1	chr13	113035129	113035329	+	1	NA	NA	NA	-150	NM_001281487	238896		NM_001281487	ENSMUSG00000078926	Cdc20b	EG238896|EG622422	cell division cycle 20B	protein-coding	0.075000	0.626866	-34(GGCTTTTTAAAG,-,0.00),-33(GCTTTTTAAAGG,-,0.00),-32(CTTTTTAAAGGT,+,0.00)
mm_75003.1	chr8	27228484	27228684	-	1	NA	NA	NA	1004	NM_013462	11556	Mm.278475	NM_013462	ENSMUSG00000031489	Adrb3	Adrb-3	adrenergic receptor, beta 3	protein-coding	0.020000	0.572139	-33(TCCTTTAAAAGC,-,0.00),-32(CCTTTAAAAGCA,+,0.00)
mm_82820.1	chr9	31030167	31030367	-	1	NA	NA	NA	-377	NM_001115130	235132	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.090000	0.651741	
mm_71672.1	chr8	60674477	60674677	+	1	NA	NA	NA	19020	NM_001177882	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	0.000000	0.383085	-54(TCCTCTTTAAGG,-,0.00),-13(TACTTTAAAAGG,-,0.00)
mm_56388.1	chr6	94683778	94683978	-	1	NA	NA	NA	16267	NM_008377	16206	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.015000	0.527363	
mm_142099.1	chr17	35835299	35835499	-	1	NA	NA	NA	2902	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.070000	0.601990	
mm_43049.1	chr5	124076818	124077018	+	1	NA	NA	NA	18880	NM_019875	56325	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.020000	0.552239	
mm_159618.1	chr4	134227414	134227614	-	1	NA	NA	NA	-131	NM_177866	329954	Mm.79072	NM_177866	ENSMUSG00000048003	Catsper4	4933412L05	cation channel, sperm associated 4	protein-coding	0.000000	0.417910	-97(CTCTATTTAAGA,-,0.00)
mm_167435.1	chr8	119423896	119424096	+	1	NA	NA	NA	-13166	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.015000	0.552239	
mm_164633.1	chr17	34039239	34039439	+	1	NA	NA	NA	201	NM_001317722	12815	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.045000	0.646766	
mm_89244.1	chr10	87858561	87858761	+	1	NA	NA	NA	-391	NM_001111275	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.005000	0.497512	
mm_33241.1	chr4	127023599	127023799	+	1	NA	NA	NA	2398	NM_023603	71514	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|OTTMUSG00000009329|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.015000	0.363184	
mm_4946.1	chr1	191192517	191192717	+	1	NA	NA	NA	-9284	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.005000	0.482587	
mm_160688.1	chr10	22273315	22273515	+	1	NA	NA	NA	-59	NM_001177775	667281	Mm.484254	NM_001177775	ENSMUSG00000075297	H60b	EG667281	histocompatibility 60b	protein-coding	0.105000	0.726368	
mm_90348.1	chr10	127163303	127163503	+	1	NA	NA	NA	-1753	NR_045166	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.010000	0.422886	
mm_129098.1	chr15	75981872	75982072	-	1	NA	NA	NA	313	NM_001163518	223648	Mm.17610	NM_146059	ENSMUSG00000098176	Ccdc166	2410075B13Rik	coiled-coil domain containing 166	protein-coding	0.150000	0.656716	
mm_158424.1	chrX	139714405	139714605	-	1	NA	NA	NA	29509	NM_001081499	245638	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	0.035000	0.432836	
mm_162789.1	chr10	75406835	75407035	+	1	NA	NA	NA	24	NM_133995	103149	Mm.441195	NM_133995	ENSMUSG00000033427	Upb1	AI195023	ureidopropionase, beta	protein-coding	0.025000	0.592040	
mm_88457.1	chr10	77560136	77560336	+	1	NA	NA	NA	-21531	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.045000	0.577114	
mm_162895.1	chr10	112271496	112271696	+	1	NA	NA	NA	473	NM_001025581	268345	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0.020000	0.597015	
mm_110914.1	chr12	76222152	76222352	-	1	NA	NA	NA	24494	NM_019784	80384	Mm.78551	NM_019784	ENSMUSG00000021056	Tex21	4931406F04Rik|4931412D23Rik|4931421K24Rik|tsec-2	testis expressed gene 21	protein-coding	0.005000	0.512438	
mm_77728.1	chr8	126852080	126852280	-	1	NA	NA	NA	93741	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.005000	0.412935	
mm_4045.1	chr1	165774712	165774912	+	1	NA	NA	NA	11032	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.020000	0.522388	
mm_71340.1	chr8	45627594	45627794	+	1	NA	NA	NA	-57	NM_001310707	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.020000	0.462687	84(GCATTTAAAAAG,-,0.00)
mm_171422.1	chr4	133956539	133956739	+	1	NA	NA	NA	11352	NM_016957	15331	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	0.010000	0.507463	
mm_142325.1	chr17	43477689	43477889	-	1	NA	NA	NA	24984	NM_008585	17287	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	0.000000	0.373134	
mm_23839.1	chr3	82358095	82358295	+	1	NA	NA	NA	123	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0.065000	0.651741	
mm_113806.1	chr13	46501978	46502178	+	1	NA	NA	NA	175	NM_026056	67252	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding	0.100000	0.741294	
mm_69838.1	chr7	141327482	141327682	-	1	NA	NA	NA	143	NM_016874	54006	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	deformed epidermal autoregulatory factor 1 (Drosophila)	protein-coding	0.155000	0.776119	
mm_92587.1	chr10	80053287	80053487	-	1	NA	NA	NA	-101	NM_008162	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.090000	0.631841	
mm_168289.1	chr11	101624624	101624824	+	1	NA	NA	NA	-3225	NM_025654	66599	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.035000	0.547264	-34(GTGTATATAAGC,-,0.00)
mm_136206.1	chr16	89833071	89833271	-	1	NA	NA	NA	-14819	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.030000	0.557214	
mm_79914.1	chr9	65462718	65462918	+	1	NA	NA	NA	1881	NM_138584	27965	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	spastic paraplegia 21 homolog (human)	protein-coding	0.010000	0.467662	
mm_92075.1	chr10	62651114	62651314	-	1	NA	NA	NA	-16	NM_053183	94213	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	0.120000	0.721393	
mm_137873.1	chr17	31442821	31443021	+	1	NA	NA	NA	56687	NM_001163748	18585	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	0.030000	0.577114	
mm_164385.1	chr16	31744301	31744501	+	1	NA	NA	NA	-9949	NM_001252436	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.005000	0.303483	
mm_139938.1	chr17	71141279	71141479	+	1	NA	NA	NA	-42599	NM_022882	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.025000	0.527363	
mm_10685.1	chr2	22621919	22622119	+	1	NA	NA	NA	-308	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.040000	0.577114	
mm_151842.1	chr19	5729421	5729621	-	1	NA	NA	NA	145	NM_181452	17826	Mm.391142	NM_023166	ENSMUSG00000024939	Fam89b	1110021A21Rik|MMTV|Mtvr2	family with sequence similarity 89, member B	protein-coding	0.120000	0.716418	
mm_138015.1	chr17	33909429	33909629	+	1	NA	NA	NA	-72	NM_001199733	13163	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0.080000	0.656716	
mm_124318.1	chr14	103346550	103346750	-	1	NA	NA	NA	150	NM_207215	105689	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.145000	0.751244	
mm_12359.1	chr2	69749719	69749919	+	1	NA	NA	NA	26731	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.030000	0.477612	
mm_97680.1	chr11	79993048	79993248	+	1	NA	NA	NA	42	NM_199196	52615	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	suppressor of zeste 12 homolog (Drosophila)	protein-coding	0.070000	0.671642	
mm_27479.1	chr3	53657057	53657257	-	1	NA	NA	NA	198	NM_172862	242022	Mm.38378	NM_172862	ENSMUSG00000037016	Frem2	6030440P17Rik|8430406N05Rik|Gm409|b2b1562Clo|my|ne|nv1	Fras1 related extracellular matrix protein 2	protein-coding	0.070000	0.676617	
mm_118177.1	chr13	106961929	106962129	-	1	NA	NA	NA	14900	NM_025447	66254	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	0.025000	0.348259	
mm_119470.1	chr14	47296427	47296627	+	1	NA	NA	NA	-1787	NM_178684	218975	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	0.010000	0.422886	43(GGTTTTTTAAGC,-,0.00)
mm_101323.1	chr11	22860344	22860544	-	1	NA	NA	NA	-108	NM_001169114	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.075000	0.621891	
mm_154308.1	chr19	61227106	61227306	-	1	NA	NA	NA	1212	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.090000	0.686567	
mm_106390.1	chr11	118570218	118570418	-	1	NA	NA	NA	93358	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.095000	0.671642	
mm_96975.1	chr11	70652040	70652240	+	1	NA	NA	NA	2510	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.025000	0.497512	
mm_2416.1	chr1	94020372	94020572	+	1	NA	NA	NA	-21	NM_173772	241159	Mm.214565	NM_173772	ENSMUSG00000034000	Neu4	9330166I04	sialidase 4	protein-coding	0.025000	0.577114	
mm_88102.1	chr10	68808073	68808273	+	1	NA	NA	NA	84427	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.060000	0.497512	
mm_109587.1	chr12	112619834	112620034	+	1	NA	NA	NA	-113	NM_007421	11565	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.095000	0.686567	
mm_103083.1	chr11	69900938	69901138	-	1	NA	NA	NA	-52	NM_027419	70419	Mm.272859	NM_027419	ENSMUSG00000018570	2810408A11Rik	1700019L01Rik|4930470J18Rik	RIKEN cDNA 2810408A11 gene	protein-coding	0.030000	0.552239	
mm_135901.1	chr16	67016157	67016357	-	1	NA	NA	NA	359139	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0.010000	0.303483	
mm_148443.1	chr19	3958718	3958918	+	1	NA	NA	NA	10	NM_028545	73458	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	0.015000	0.562189	
mm_91649.1	chr10	42478321	42478521	-	1	NA	NA	NA	144	NM_145743	215951	Mm.89646	NM_145743	ENSMUSG00000038302	Lace1	CG8520	lactation elevated 1	protein-coding	0.085000	0.616915	
mm_168964.1	chr12	80441377	80441577	-	1	NA	NA	NA	-4876	NM_177267	320808	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	0.035000	0.487562	
mm_168089.1	chr10	128011644	128011844	+	1	NA	NA	NA	-3471	NM_008921	19075	Mm.2903	NM_008921	ENSMUSG00000025395	Prim1	AI324982	DNA primase, p49 subunit	protein-coding	0.030000	0.462687	
mm_107749.1	chr12	59066778	59066978	+	1	NA	NA	NA	-41	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.110000	0.686567	
mm_14382.1	chr2	129630849	129631049	+	1	NA	NA	NA	37780	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.000000	0.343284	-97(CAGTCTTAAAGC,-,0.00)
mm_78194.1	chr9	21351867	21352067	+	1	NA	NA	NA	14139	NM_152808	68682	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0.005000	0.328358	
mm_57227.1	chr6	123282481	123282681	-	1	NA	NA	NA	7290	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.005000	0.263682	
mm_27376.1	chr3	50443390	50443590	-	1	NA	NA	NA	123	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.035000	0.562189	
mm_136712.1	chr17	7928312	7928512	+	1	NA	NA	NA	2412	NM_145968	72536	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik	T cell activation Rho GTPase activating protein	protein-coding	0.025000	0.427861	
mm_89230.1	chr10	87533279	87533479	+	1	NA	NA	NA	11584	NM_008777	18478	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0.010000	0.442786	
mm_34911.1	chr4	155705036	155705236	+	1	NA	NA	NA	321	NM_026899	68991	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0.155000	0.721393	
mm_31908.1	chr4	84884195	84884395	+	1	NA	NA	NA	-14	NM_175275	338349	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0.130000	0.701493	
mm_107612.1	chr12	49385094	49385294	+	1	NA	NA	NA	2187	NM_008241	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.110000	0.626866	
mm_138536.1	chr17	35248879	35249079	+	1	NA	NA	NA	-2310	NR_106169	102465886		NR_106169	ENSMUSG00000098269	Mir8094	Gm27513|mmu-mir-8094	microRNA 8094	ncRNA	0.025000	0.492537	
mm_128932.1	chr15	74636642	74636842	-	1	NA	NA	NA	-424	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.010000	0.527363	
mm_47753.1	chr5	131245864	131246064	-	1	NA	NA	NA	61558	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.020000	0.343284	
mm_37674.1	chr4	129121617	129121817	-	1	NA	NA	NA	30	NM_001130419	15444	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	0.035000	0.641791	
mm_27607.1	chr3	59194943	59195143	-	1	NA	NA	NA	61	NM_001302203	84111	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	0.025000	0.477612	
mm_151746.1	chr19	5071982	5072182	-	1	NA	NA	NA	4004	NM_054042	70445	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.065000	0.621891	
mm_2188.1	chr1	89070268	89070468	+	1	NA	NA	NA	-94	NM_133816	98402	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.135000	0.791045	
mm_142274.1	chr17	39847945	39848145	-	1	NA	NA	NA	5048	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.065000	0.537313	
mm_163485.1	chr12	109453435	109453635	+	1	NA	NA	NA	80	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.125000	0.756219	
mm_105790.1	chr11	109986800	109987000	-	1	NA	NA	NA	8916	NM_013851	27404	Mm.341004	NM_013851	ENSMUSG00000020620	Abca8b	Abca8	ATP-binding cassette, sub-family A (ABC1), member 8b	protein-coding	0.020000	0.492537	
mm_94368.1	chr11	5057933	5058133	+	1	NA	NA	NA	-95	NM_145216	75668	Mm.374836	NM_145216	ENSMUSG00000034209	Rasl10a	2210403B10Rik|AI852688	RAS-like, family 10, member A	protein-coding	0.135000	0.766169	
mm_106559.1	chr11	120630043	120630243	-	1	NA	NA	NA	3404	NM_010756	17134	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.020000	0.552239	
mm_156111.1	chrX	114474391	114474591	+	1	NA	NA	NA	158	NM_001290477	237010	Mm.132583	NM_172781	ENSMUSG00000025597	Klhl4	B130014A11|C130018J01Rik	kelch-like 4	protein-coding	0.025000	0.502488	
mm_56775.1	chr6	116628911	116629111	-	1	NA	NA	NA	-12	NM_026057	67255	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0.110000	0.686567	
mm_108749.1	chr12	88862950	88863150	+	1	NA	NA	NA	68546	NM_001198587	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.005000	0.248756	-75(CACCCTAAAAGG,-,0.00)
mm_67914.1	chr7	99828198	99828398	-	1	NA	NA	NA	119	NM_016720	50877	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	0.050000	0.587065	
mm_87479.1	chr10	51493070	51493270	+	1	NA	NA	NA	2272	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.398010	
mm_155100.1	chrX	48275776	48275976	+	1	NA	NA	NA	9550	NR_045916	100500713	Mm.396609	NR_045916	ENSMUSG00000097197	9530027J09Rik	-	RIKEN cDNA 9530027J09 gene	ncRNA	0.005000	0.417910	
mm_170191.1	chr17	65661746	65661946	-	1	NA	NA	NA	-19642	NM_001146002	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.080000	0.577114	
mm_113859.1	chr13	47247524	47247724	+	1	NA	NA	NA	53621	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.025000	0.402985	
mm_15378.1	chr2	156475753	156475953	+	1	NA	NA	NA	319	NM_001006664	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.175000	0.850746	
mm_162677.1	chr10	9976554	9976754	+	1	NA	NA	NA	-75614	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0.005000	0.442786	
mm_94266.1	chr11	3530134	3530334	+	1	NA	NA	NA	9058	NM_013870	29856	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.030000	0.587065	
mm_156940.1	chrX	169926989	169927189	+	1	NA	NA	NA	47470	NM_001290505	17318	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	0.035000	0.577114	
mm_12895.1	chr2	84798751	84798951	+	1	NA	NA	NA	23	NM_019949	56791	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.045000	0.606965	
mm_141820.1	chr17	34615702	34615902	-	1	NA	NA	NA	169	NM_152922	81701	Mm.231343	NM_152922	ENSMUSG00000015467	Egfl8	Ng3	EGF-like domain 8	protein-coding	0.005000	0.616915	
mm_8982.1	chr1	165678733	165678933	-	1	NA	NA	NA	29261	NM_178593	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.005000	0.442786	-73(GTGTTTTAAAGG,-,0.00),-71(GTTTTAAAGGAC,+,0.00)
mm_58889.1	chr7	17090421	17090621	+	1	NA	NA	NA	16481	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.010000	0.437811	
mm_59196.1	chr7	24504396	24504596	+	1	NA	NA	NA	-2591	NM_001290461	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.025000	0.527363	
mm_75219.1	chr8	39605822	39606022	-	1	NA	NA	NA	36756	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.427861	-24(CCTTTTAAGATC,+,0.00),19(CTCCTTAAAAGA,-,0.00),20(TCCTTAAAAGAC,+,0.00),21(CCTTAAAAGACC,+,0.00)
mm_8214.1	chr1	138142228	138142428	-	1	NA	NA	NA	32798	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.477612	
mm_91319.1	chr10	24959487	24959687	-	1	NA	NA	NA	-32117	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.000000	0.437811	
mm_31755.1	chr4	63356060	63356260	+	1	NA	NA	NA	-2	NM_013623	18407	Mm.381399	NM_013623	ENSMUSG00000028359	Orm3	Agp-3|Orm-3	orosomucoid 3	protein-coding	0.005000	0.552239	-34(TGTTATAAAAGC,-,0.00)
mm_64900.1	chr7	15959725	15959925	-	1	NA	NA	NA	7710	NM_153068	259300	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0.020000	0.532338	
mm_108351.1	chr12	80518466	80518666	+	1	NA	NA	NA	-424	NM_001081421	108760	Mm.308296	NM_001081421	ENSMUSG00000021130	Galnt16	5730405L21Rik|AI415388|Galntl1|mpp-GalNAc-T16	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16	protein-coding	0.080000	0.636816	
mm_151845.1	chr19	5731615	5731815	-	1	NA	NA	NA	17	NM_020491	56390	Mm.455818	NM_020491	ENSMUSG00000079478	Sssca1	1500016H19Rik|C184L	Sjogren's syndrome/scleroderma autoantigen 1 homolog (human)	protein-coding	0.060000	0.616915	
mm_69845.1	chr7	141365082	141365282	-	1	NA	NA	NA	-72	NR_033532	320871	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0.010000	0.477612	
mm_150485.1	chr19	38953491	38953691	+	1	NA	NA	NA	22601	NM_008234	15201	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	0.015000	0.353234	
mm_123292.1	chr14	61556664	61556864	-	1	NA	NA	NA	122	NM_025697	66674	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0.110000	0.751244	
mm_123971.1	chr14	75130926	75131126	-	1	NA	NA	NA	-97	NM_001247984	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.070000	0.701493	
mm_152456.1	chr19	10869649	10869849	-	1	NA	NA	NA	30	NM_133804	98170	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.095000	0.711443	
mm_161469.1	chr15	78901478	78901678	+	1	NA	NA	NA	1810	NM_009164	20401	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	0.020000	0.606965	
mm_13574.1	chr2	112305896	112306096	+	1	NA	NA	NA	21308	NM_133648	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.005000	0.373134	
mm_89308.1	chr10	87916306	87916506	+	1	NA	NA	NA	-50265	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.358209	
mm_14505.1	chr2	132252702	132252902	+	1	NA	NA	NA	378	NM_011045	18538	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0.080000	0.631841	
mm_139872.1	chr17	70662645	70662845	+	1	NA	NA	NA	100998	NM_001128181	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.075000	0.666667	
mm_78703.1	chr9	41355116	41355316	+	1	NA	NA	NA	-21310	NR_040725	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.005000	0.368159	
mm_122494.1	chr14	46634364	46634564	-	1	NA	NA	NA	2959	NR_046460	74458	Mm.390708	NR_046460		4933425B07Rik	-	RIKEN cDNA 4933425B07 gene	ncRNA	0.025000	0.512438	
mm_99697.1	chr11	106142344	106142544	+	1	NA	NA	NA	17698	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.035000	0.547264	
mm_111373.1	chr12	87254873	87255073	-	1	NA	NA	NA	9271	NM_134044	104799	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	0.000000	0.383085	
mm_88519.1	chr10	78054731	78054931	+	1	NA	NA	NA	-504	NM_001284198	54427	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.015000	0.482587	
mm_120470.1	chr14	65973252	65973452	+	1	NA	NA	NA	4869	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.025000	0.492537	
mm_45490.1	chr5	71657793	71657993	-	1	NA	NA	NA	415	NM_010251	14397	Mm.248731	NM_010251	ENSMUSG00000029211	Gabra4	Gabra-4	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	protein-coding	0.105000	0.651741	
mm_46862.1	chr5	113819213	113819413	-	1	NA	NA	NA	11188	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.025000	0.542289	
mm_71172.1	chr8	40595464	40595664	+	1	NA	NA	NA	39228	NM_001040699	54384	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.015000	0.447761	
mm_148363.1	chr18	85698084	85698284	-	1	NA	NA	NA	-696768	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.060000	0.601990	
mm_8391.1	chr1	151345151	151345351	-	1	NA	NA	NA	753	NM_001039511	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.115000	0.686567	
mm_12832.1	chr2	80635161	80635361	+	1	NA	NA	NA	-3551	NM_027091	69482	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	0.030000	0.462687	-61(GCTTATATAACA,+,0.00)
mm_68530.1	chr7	113262936	113263136	-	1	NA	NA	NA	55571	NM_007489	11865	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0.020000	0.487562	-32(CTTTAAATACCC,+,0.00)
mm_158086.1	chrX	101268096	101268296	-	1	NA	NA	NA	59	NM_001308535	16186	Mm.2923	NM_013563	ENSMUSG00000031304	Il2rg	CD132|[g]c|gamma(c)|gc|p64	interleukin 2 receptor, gamma chain	protein-coding	0.015000	0.507463	
mm_77536.1	chr8	123032651	123032851	-	1	NA	NA	NA	9533	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.005000	0.432836	
mm_124389.1	chr14	110754772	110754972	-	1	NA	NA	NA	277	NM_175499	239250	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding	0.010000	0.422886	
mm_156836.1	chrX	164373330	164373530	+	1	NA	NA	NA	-92	NM_001308489	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.005000	0.398010	14(CTCCTTATAAAG,-,0.00),16(CCTTATAAAGCA,+,0.00)
mm_124704.1	chr15	6540221	6540421	+	1	NA	NA	NA	-39526	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.015000	0.487562	
mm_158544.1	chrX	145480521	145480721	-	1	NA	NA	NA	7018	NM_001290274	27494	Mm.100068	NM_153319	ENSMUSG00000041688	Amot	CAG-2|D0Kist1|Sii6	angiomotin	protein-coding	0.010000	0.422886	
mm_67559.1	chr7	81789358	81789558	-	1	NA	NA	NA	-5	NM_026077	67290	Mm.248391	NM_026077	ENSMUSG00000025102	3110040N11Rik	AI851475	RIKEN cDNA 3110040N11 gene	protein-coding	0.085000	0.636816	
mm_20919.1	chr2	150688917	150689117	-	1	NA	NA	NA	120	NM_054068	114889	Mm.207061	NM_054068	ENSMUSG00000033080	Vsx1	CHX10-like	visual system homeobox 1	protein-coding	0.040000	0.587065	-35(CAGCATAAAAGG,-,0.00)
mm_145496.1	chr18	60390453	60390653	+	1	NA	NA	NA	14524	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.010000	0.432836	
mm_142735.1	chr17	48387907	48388107	-	1	NA	NA	NA	12573	NM_001347402	18044	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	0.000000	0.517413	
mm_40704.1	chr5	65861190	65861390	+	1	NA	NA	NA	-2279	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.025000	0.517413	
mm_101406.1	chr11	26594586	26594786	-	1	NA	NA	NA	-766	NM_001252447	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.000000	0.422886	
mm_166304.1	chr5	105696038	105696238	-	1	NA	NA	NA	-3831	NM_001122768	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.005000	0.412935	
mm_16988.1	chr2	18055886	18056086	-	1	NA	NA	NA	749	NM_010804	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.040000	0.472637	-33(CCATTTATATAG,+,0.00)
mm_160669.1	chr9	122263824	122264024	-	1	NA	NA	NA	10104	NR_106185	102465896		NR_106185	ENSMUSG00000098922	Mir8106	Gm27594|mmu-mir-8106	microRNA 8106	ncRNA	0.025000	0.492537	
mm_113138.1	chr13	24635994	24636194	+	1	NA	NA	NA	-2554	NM_001080381	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.005000	0.462687	
mm_135288.1	chr16	38458578	38458778	-	1	NA	NA	NA	-255	NM_009855	12519	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0.005000	0.457711	
mm_133234.1	chr16	77013714	77013914	+	1	NA	NA	NA	-255	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.165000	0.766169	
mm_12446.1	chr2	71117986	71118186	+	1	NA	NA	NA	32	NM_028593	73649	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	0.090000	0.706468	
mm_30275.1	chr3	146812901	146813101	-	1	NA	NA	NA	-55	NM_011100	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.160000	0.776119	
mm_64684.1	chr7	4514327	4514527	-	1	NA	NA	NA	1548	NM_001277903	21955	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0.015000	0.592040	
mm_165650.1	chr3	83841209	83841409	-	1	NA	NA	NA	299	NM_011905	24088	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.035000	0.626866	
mm_116211.1	chr13	32783823	32784023	-	1	NA	NA	NA	-2144	NM_001166030	238564	Mm.60041	NM_001166030	ENSMUSG00000044951	Mylk4	EG238564	myosin light chain kinase family, member 4	protein-coding	0.020000	0.507463	
mm_71901.1	chr8	70043001	70043201	+	1	NA	NA	NA	288	NM_027481	70616	Mm.17665	NM_027481	ENSMUSG00000011306	Sugp1	5730496N02Rik|Sf4	SURP and G patch domain containing 1	protein-coding	0.070000	0.606965	
mm_131514.1	chr16	17509066	17509266	+	1	NA	NA	NA	-46	NM_001331226	66863	Mm.161726	NM_025808	ENSMUSG00000022761	Lztr1	1200003E21Rik|AI591627|AW550890	leucine-zipper-like transcriptional regulator, 1	protein-coding	0.080000	0.606965	
mm_45601.1	chr5	75043092	75043292	-	1	NA	NA	NA	1449	NM_028850	74277	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	0.030000	0.462687	
mm_118186.1	chr13	107503346	107503546	-	1	NA	NA	NA	33624	NR_045084	105120	Mm.417700	NR_045083		AI197445	-	expressed sequence AI197445	ncRNA	0.005000	0.467662	
mm_45222.1	chr5	53246806	53247006	-	1	NA	NA	NA	-20200	NM_001145433	66278	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.010000	0.522388	
mm_11697.1	chr2	35978634	35978834	+	1	NA	NA	NA	890	NM_029774	74410	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0.035000	0.497512	
mm_138847.1	chr17	40580343	40580543	+	1	NA	NA	NA	5732	NM_001287194	102577427		NM_001287194		Esp5	-	exocrine gland secreted peptide 5	protein-coding	0.030000	0.487562	
mm_72972.1	chr8	92885772	92885972	+	1	NA	NA	NA	-15523	NM_027112	69543	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	0.005000	0.432836	
mm_109479.1	chr12	111428539	111428739	+	1	NA	NA	NA	11194	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.020000	0.601990	
mm_121582.1	chr14	123660201	123660401	+	1	NA	NA	NA	161	NM_145467	223272	Mm.383176	NM_145467	ENSMUSG00000032925	Itgbl1	B930011D01Rik	integrin, beta-like 1	protein-coding	0.005000	0.577114	
mm_157640.1	chrX	57224037	57224237	-	1	NA	NA	NA	11994	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.010000	0.527363	
mm_12324.1	chr2	69392973	69393173	+	1	NA	NA	NA	12611	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.020000	0.487562	
mm_17148.1	chr2	25196691	25196891	-	1	NA	NA	NA	22	NM_146115	227612	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0.015000	0.616915	
mm_150637.1	chr19	41495014	41495214	+	1	NA	NA	NA	-30138	NM_001326287	627352	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0.005000	0.452736	
mm_52430.1	chr6	113483419	113483619	+	1	NA	NA	NA	-50	NM_133930	171508	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811	cysteine-rich with EGF-like domains 1	protein-coding	0.025000	0.537313	
mm_121135.1	chr14	101884032	101884232	+	1	NA	NA	NA	43509	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.015000	0.447761	
mm_62883.1	chr7	114768691	114768891	+	1	NA	NA	NA	23025	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	0.010000	0.482587	
mm_76278.1	chr8	84183974	84184174	-	1	NA	NA	NA	-5113	NR_029821	723819		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	0.100000	0.716418	
mm_33368.1	chr4	129513534	129513734	+	1	NA	NA	NA	53	NM_010807	17357	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0.130000	0.736318	
mm_162933.1	chr10	126572971	126573171	-	1	NA	NA	NA	137320	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	0.000000	0.442786	
mm_151310.1	chr19	55800807	55801007	+	1	NA	NA	NA	59097	NM_001142923	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.005000	0.383085	
mm_146640.1	chr18	10706591	10706791	-	1	NA	NA	NA	5	NM_134130	106861	Mm.273108	NM_134130	ENSMUSG00000002475	Abhd3	AA675331|LABH3	abhydrolase domain containing 3	protein-coding	0.110000	0.711443	
mm_97710.1	chr11	80178658	80178858	+	1	NA	NA	NA	-5114	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.010000	0.502488	
mm_46542.1	chr5	105731061	105731261	-	1	NA	NA	NA	30351	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.010000	0.472637	
mm_171098.1	chr3	131951754	131951954	-	1	NA	NA	NA	-133438	NM_020265	56811	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.020000	0.567164	
mm_104042.1	chr11	86328422	86328622	-	1	NA	NA	NA	29003	NM_001080931	327987	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0.010000	0.393035	
mm_27491.1	chr3	54807687	54807887	-	1	NA	NA	NA	4	NM_133231	170767	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	0.145000	0.711443	
mm_28245.1	chr3	88502964	88503164	-	1	NA	NA	NA	288	NM_001111102	16905	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.085000	0.701493	
mm_150433.1	chr19	37536710	37536910	+	1	NA	NA	NA	-13608	NM_175353	107371	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0.025000	0.462687	
mm_71891.1	chr8	69832650	69832850	+	1	NA	NA	NA	46	NM_001024954	80720	Mm.210823	NM_030555	ENSMUSG00000031860	Pbx4	2410015M21Rik|AI429113|AW045266	pre B cell leukemia homeobox 4	protein-coding	0.110000	0.716418	
mm_1266.1	chr1	63200473	63200673	+	1	NA	NA	NA	215	NM_001285936	73884	Mm.86986	NM_028673	ENSMUSG00000027520	Zdbf2	4930431J08Rik|9330107J05Rik	zinc finger, DBF-type containing 2	protein-coding	0.040000	0.497512	
mm_155722.1	chrX	96152486	96152686	+	1	NA	NA	NA	56541	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.020000	0.502488	
mm_50974.1	chr6	61180402	61180602	+	1	NA	NA	NA	177	NM_183310	232035	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding	0.150000	0.771144	
mm_57341.1	chr6	124747043	124747243	-	1	NA	NA	NA	-6064	NM_013535	14790	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.010000	0.606965	
mm_37416.1	chr4	122862596	122862796	-	1	NA	NA	NA	23361	NM_007598	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.005000	0.467662	
mm_2211.1	chr1	89737600	89737800	+	1	NA	NA	NA	-53808	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.005000	0.268657	
mm_8926.1	chr1	163994688	163994888	-	1	NA	NA	NA	-7	NM_201364	381306	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	0.095000	0.631841	
mm_123435.1	chr14	64441759	64441959	-	1	NA	NA	NA	-819	NM_001253712	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.010000	0.427861	
mm_170752.1	chr2	156356599	156356799	-	1	NA	NA	NA	36280	NR_024329	347740	Mm.324242	NR_024329		2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	0.070000	0.552239	-32(CCCTATAAAAAG,-,0.00)
mm_83247.1	chr9	42399850	42400050	-	1	NA	NA	NA	-21	NM_001324548	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.015000	0.432836	-31(CTCTTTTTAAAG,-,0.00),-30(TCTTTTTAAAGG,-,0.00),-29(CTTTTTAAAGGA,+,0.00)
mm_89498.1	chr10	93897070	93897270	+	1	NA	NA	NA	-5968	NM_019648	56307	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	0.005000	0.452736	
mm_32553.1	chr4	109407043	109407243	+	1	NA	NA	NA	43	NM_153392	230603	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.175000	0.845771	
mm_160486.1	chr8	125734297	125734497	+	1	NA	NA	NA	194	NM_001310688	66566	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.075000	0.676617	
mm_56460.1	chr6	98504755	98504955	-	1	NA	NA	NA	-162101	NM_001128092	330390	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0.000000	0.363184	
mm_39600.1	chr5	23676022	23676222	+	1	NA	NA	NA	36545	NR_038090	433855	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	0.145000	0.800995	
mm_60616.1	chr7	44595223	44595423	+	1	NA	NA	NA	4437	NM_001290682	16504	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.045000	0.562189	76(GCCCAGATAAGG,-,0.00)
mm_117317.1	chr13	67637645	67637845	-	1	NA	NA	NA	8	NM_183146	212281	Mm.342918	NM_183146	ENSMUSG00000021510	Zfp729a	A530054K11Rik|Rslcan3	zinc finger protein 729a	protein-coding	0.030000	0.497512	
mm_117493.1	chr13	78198480	78198680	-	1	NA	NA	NA	293	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.110000	0.756219	
mm_119722.1	chr14	53960819	53961019	+	1	NA	NA	NA	293010	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.442786	
mm_70865.1	chr8	24725884	24726084	+	1	NA	NA	NA	-132	NM_001324489	11497	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	0.020000	0.542289	
mm_137173.1	chr17	23815178	23815378	+	1	NA	NA	NA	12091	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.025000	0.577114	
mm_44014.1	chr5	147270025	147270225	+	1	NA	NA	NA	-6	NM_008814	18609	Mm.389714	NM_008814	ENSMUSG00000029644	Pdx1	IDX-1|IPF-1|Ipf1|Mody4|STF-1|pdx-1	pancreatic and duodenal homeobox 1	protein-coding	0.055000	0.656716	
mm_43821.1	chr5	142960874	142961074	+	1	NA	NA	NA	619	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.150000	0.676617	
mm_11754.1	chr2	38481279	38481479	+	1	NA	NA	NA	-30318	NM_021606	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.015000	0.587065	
mm_103286.1	chr11	72266504	72266704	-	1	NA	NA	NA	0	NM_001004148	237831	Mm.340778	NM_001004148	ENSMUSG00000020805	Slc13a5	Indy|NaC2/NaCT|Nact|mINDY	solute carrier family 13 (sodium-dependent citrate transporter), member 5	protein-coding	0.070000	0.587065	-34(CCCCTTTTAAGC,-,0.00),-32(CCTTTTAAGCTC,+,0.00)
mm_96289.1	chr11	63128932	63129132	+	1	NA	NA	NA	50	NM_001302261	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.010000	0.572139	
mm_57909.1	chr6	132572083	132572283	-	1	NA	NA	NA	2341	NM_011174	19131	Mm.425348	NM_011174	ENSMUSG00000059934	Prh1	MP2|Prp	proline rich protein HaeIII subfamily 1	protein-coding	0.020000	0.691542	
mm_109969.1	chr12	12936846	12937046	-	1	NA	NA	NA	4890	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.035000	0.437811	
mm_76184.1	chr8	82402360	82402560	-	1	NA	NA	NA	126	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.020000	0.587065	
mm_156077.1	chrX	109196657	109196857	+	1	NA	NA	NA	1	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.020000	0.442786	
mm_112668.1	chr13	16027307	16027507	+	1	NA	NA	NA	15556	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.472637	
mm_67683.1	chr7	89338595	89338795	-	1	NA	NA	NA	92	NM_028343	72759	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.150000	0.741294	
mm_96983.1	chr11	70656608	70656808	+	1	NA	NA	NA	-468	NM_001136062	13808	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.035000	0.592040	
mm_167236.1	chr8	15031512	15031712	+	1	NA	NA	NA	14466	NR_037972	434285	Mm.334425	NM_001007591	ENSMUSG00000049008	BB014433	-	expressed sequence BB014433	ncRNA	0.005000	0.552239	
mm_31210.1	chr4	43957379	43957579	+	1	NA	NA	NA	-223	NM_027450	384009	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0.090000	0.621891	
mm_141184.1	chr17	26939151	26939351	-	1	NA	NA	NA	207	NR_104458	67675	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	0.055000	0.592040	
mm_78512.1	chr9	32910828	32911028	+	1	NA	NA	NA	18038	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.030000	0.507463	25(CACCATTTAAGC,-,0.00)
mm_133386.1	chr16	84773797	84773997	+	1	NA	NA	NA	-226	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.050000	0.542289	-30(ACTTTAAGAGCG,+,0.00)
mm_17926.1	chr2	35461289	35461489	-	1	NA	NA	NA	60	NM_001308299	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.025000	0.567164	
mm_90760.1	chr10	5550571	5550771	-	1	NA	NA	NA	21	NM_153399	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.050000	0.686567	
mm_128955.1	chr15	74784833	74785033	-	1	NA	NA	NA	-6074	NR_027837	78725	Mm.171357	NM_172433	ENSMUSG00000101026	D730001G18Rik	Ly6g6g	RIKEN cDNA D730001G18 gene	ncRNA	0.000000	0.532338	
mm_115619.1	chr13	12075681	12075881	-	1	NA	NA	NA	31164	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.035000	0.512438	
mm_170697.1	chr2	134730868	134731068	-	1	NA	NA	NA	-55196	NM_019677	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding	0.005000	0.502488	
mm_82582.1	chr9	21166775	21166975	-	1	NA	NA	NA	1161	NM_183408	18577	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.000000	0.532338	
mm_24617.1	chr3	93506492	93506692	+	1	NA	NA	NA	-13904	NM_016740	20195	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0.040000	0.527363	
mm_171715.1	chr4	81148833	81149033	-	1	NA	NA	NA	238247	NM_026821	52829	Mm.273986	NM_026821	ENSMUSG00000048706	Lurap1l	1110029A09Rik|AV077978|AV175137|D4Bwg0951e|WI-13707|bM350F23.1	leucine rich adaptor protein 1-like	protein-coding	0.015000	0.462687	
mm_129007.1	chr15	74881602	74881802	-	1	NA	NA	NA	2	NM_025929	67038	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.010000	0.537313	
mm_100773.1	chr11	4789703	4789903	-	1	NA	NA	NA	-43025	NM_138948	192650	Mm.207056	NM_138948	ENSMUSG00000009075	Cabp7	-	calcium binding protein 7	protein-coding	0.025000	0.552239	
mm_80737.1	chr9	94669880	94670080	+	1	NA	NA	NA	88	NM_177909	331004	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.040000	0.507463	
mm_40152.1	chr5	35392740	35392940	+	1	NA	NA	NA	3723	NM_010445	15371	Mm.358606	NM_010445	ENSMUSG00000067438	Hmx1	Nkx5-3	H6 homeobox 1	protein-coding	0.035000	0.472637	
mm_152105.1	chr19	6925274	6925474	-	1	NA	NA	NA	6	NM_001039494	67077	Mm.251306	NM_001039494	ENSMUSG00000050623	Tex40	1700019N12Rik|A430107B04Rik|MLZ-622	testis expressed 40	protein-coding	0.045000	0.577114	
mm_117917.1	chr13	99432921	99433121	-	1	NA	NA	NA	-20195	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.040000	0.567164	
mm_168216.1	chr10	7617222	7617422	-	1	NA	NA	NA	27522	NM_172784	237253	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	0.025000	0.522388	
mm_133038.1	chr16	57353202	57353402	+	1	NA	NA	NA	25	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.030000	0.512438	
mm_31155.1	chr4	43442176	43442376	+	1	NA	NA	NA	-1	NM_011571	21754	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.085000	0.636816	
mm_86343.1	chr9	123307848	123308048	-	1	NA	NA	NA	-47159	NM_001002267	72309	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	0.030000	0.532338	
mm_43703.1	chr5	139253404	139253604	+	1	NA	NA	NA	7	NM_001163316	67604	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.015000	0.562189	
mm_133318.1	chr16	77658336	77658536	+	1	NA	NA	NA	12163	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0.000000	0.358209	
mm_28017.1	chr3	83044839	83045039	-	1	NA	NA	NA	4924	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.015000	0.437811	
mm_128370.1	chr15	42586193	42586393	-	1	NA	NA	NA	90684	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.000000	0.293532	
mm_144795.1	chr18	35999247	35999447	+	1	NA	NA	NA	34517	NR_110349	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.000000	0.427861	
mm_92460.1	chr10	77924031	77924231	-	1	NA	NA	NA	-21595	NM_145152	237387	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.025000	0.597015	
mm_49296.1	chr6	17694075	17694275	+	1	NA	NA	NA	181	NM_001289625	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.165000	0.771144	
mm_58601.1	chr7	5051391	5051591	+	1	NA	NA	NA	-41	NM_026900	68992	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	0.090000	0.651741	
mm_97380.1	chr11	77715096	77715296	+	1	NA	NA	NA	10097	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.005000	0.318408	-63(CTTTTTAAACAT,+,0.00)
mm_73464.1	chr8	106660873	106661073	+	1	NA	NA	NA	-22095	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.055000	0.532338	
mm_151747.1	chr19	5072019	5072219	-	1	NA	NA	NA	4041	NM_054042	70445	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.065000	0.651741	
mm_82061.1	chr9	122739181	122739381	+	1	NA	NA	NA	-8065	NM_001199736	671232	Mm.296421	NM_001199736	ENSMUSG00000094985	Topaz1	Gm9524	testis and ovary specific PAZ domain containing 1	protein-coding	0.010000	0.542289	-36(CACTATAAAGGG,-,0.00)
mm_113998.1	chr13	52583344	52583544	+	1	NA	NA	NA	7	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.135000	0.721393	
mm_35305.1	chr4	24850794	24850994	-	1	NA	NA	NA	192	NM_001163020	212390	Mm.412074	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	0.090000	0.666667	
mm_36671.1	chr4	95966911	95967111	-	1	NA	NA	NA	24	NR_045777	319247	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0.045000	0.621891	
mm_120528.1	chr14	67015846	67016046	+	1	NA	NA	NA	-7069	NM_009761	12177	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0.015000	0.472637	
mm_73613.1	chr8	110090050	110090250	+	1	NA	NA	NA	10416	NM_175480	234725	Mm.87487	NM_175480	ENSMUSG00000044676	Zfp612	B230354B21Rik	zinc finger protein 612	protein-coding	0.005000	0.363184	
mm_50837.1	chr6	54816701	54816901	+	1	NA	NA	NA	-115	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.170000	0.796020	
mm_81567.1	chr9	110419752	110419952	+	1	NA	NA	NA	44	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.010000	0.502488	-30(CTACATAAAAGG,-,0.00)
mm_90234.1	chr10	121377101	121377301	+	1	NA	NA	NA	12111	NM_029364	75612	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.045000	0.577114	
mm_143967.1	chr17	87265794	87265994	-	1	NA	NA	NA	53	NM_176808	193813	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	0.130000	0.736318	
mm_125639.1	chr15	62086191	62086391	+	1	NA	NA	NA	47034	NR_132746	19296	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	plasmacytoma variant translocation 1	ncRNA	0.005000	0.353234	-54(CCATATAGAGTG,+,0.00),-6(TTTTTTAAGGGC,+,0.00)
mm_58541.1	chr7	4520364	4520564	+	1	NA	NA	NA	1979	NM_009406	21954	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0.040000	0.562189	
mm_96759.1	chr11	69914058	69914258	+	1	NA	NA	NA	-34	NM_019726	56310	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953	G protein pathway suppressor 2	protein-coding	0.145000	0.736318	
mm_111037.1	chr12	79191782	79191982	-	1	NA	NA	NA	-63	NM_021557	17252	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c	retinol dehydrogenase 11	protein-coding	0.045000	0.527363	49(CTCTTTAGAGCA,+,0.00)
mm_60607.1	chr7	44573209	44573409	+	1	NA	NA	NA	864	NM_008437	16541	Mm.383181	NM_008437	ENSMUSG00000002204	Napsa	KAP|Kdap|NAP1|SNAPA|pronapsin	napsin A aspartic peptidase	protein-coding	0.005000	0.432836	
mm_165555.1	chr3	14767383	14767583	-	1	NA	NA	NA	10977	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.010000	0.462687	
mm_16100.1	chr2	169599696	169599896	+	1	NA	NA	NA	-33850	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.005000	0.487562	
mm_37475.1	chr4	123565368	123565568	-	1	NA	NA	NA	-50952	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.000000	0.457711	
mm_108310.1	chr12	79532475	79532675	+	1	NA	NA	NA	235224	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.000000	0.358209	
mm_119135.1	chr14	31166446	31166646	+	1	NA	NA	NA	2095	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.035000	0.606965	
mm_25295.1	chr3	105904595	105904795	+	1	NA	NA	NA	274	NM_009631	11542	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0.015000	0.502488	
mm_23863.1	chr3	83012807	83013007	+	1	NA	NA	NA	5183	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.060000	0.517413	
mm_148059.1	chr18	72159085	72159285	-	1	NA	NA	NA	191884	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.010000	0.457711	
mm_151399.1	chr19	56461538	56461738	+	1	NA	NA	NA	1	NM_172641	226245	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	0.020000	0.517413	
mm_28522.1	chr3	92588900	92589100	-	1	NA	NA	NA	24	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.000000	0.467662	
mm_64487.1	chr7	143067438	143067638	+	1	NA	NA	NA	-1830	NM_020285	56844	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.000000	0.388060	
mm_10914.1	chr2	25373161	25373361	+	1	NA	NA	NA	1226	NM_001081085	72080	Mm.250293	NM_001081085	ENSMUSG00000026955	Sapcd2	2010317E24Rik|6030458L21Rik|AL033337|ang	suppressor APC domain containing 2	protein-coding	0.025000	0.557214	
mm_157686.1	chrX	60147790	60147990	-	1	NA	NA	NA	-190	NM_001289730	109904	Mm.93796	NM_133197	ENSMUSG00000031139	Mcf2	B230117G22Rik|Dbl|Mcf-2	mcf.2 transforming sequence	protein-coding	0.010000	0.432836	
mm_166293.1	chr5	104092810	104093010	+	1	NA	NA	NA	-15302	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.010000	0.497512	
mm_51568.1	chr6	83714444	83714644	+	1	NA	NA	NA	-2343	NR_002871	574519	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	0.030000	0.527363	
mm_162477.1	chr1	133386002	133386202	-	1	NA	NA	NA	22530	NM_175443	214253	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	0.015000	0.572139	
mm_144973.1	chr18	37890811	37891011	+	1	NA	NA	NA	-36251	NR_105945	102465592		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.000000	0.621891	
mm_46453.1	chr5	105116794	105116994	-	1	NA	NA	NA	-6602	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.005000	0.452736	
mm_119906.1	chr14	54949952	54950152	+	1	NA	NA	NA	-910	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.030000	0.597015	
mm_105279.1	chr11	102408365	102408565	-	1	NA	NA	NA	-948	NM_026542	68066	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.080000	0.592040	
mm_122485.1	chr14	46387205	46387405	-	1	NA	NA	NA	3364	NM_001316360	12159	Mm.6813	NM_007554	ENSMUSG00000021835	Bmp4	Bmp-4|Bmp2b|Bmp2b-1|Bmp2b1	bone morphogenetic protein 4	protein-coding	0.050000	0.557214	
mm_85462.1	chr9	105494977	105495177	-	1	NA	NA	NA	56	NM_175025	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.140000	0.781095	
mm_83899.1	chr9	56145180	56145380	-	1	NA	NA	NA	15790	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.000000	0.363184	
mm_79832.1	chr9	64794612	64794812	+	1	NA	NA	NA	-16299	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.010000	0.447761	
mm_139405.1	chr17	52458586	52458786	+	1	NA	NA	NA	-144023	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.010000	0.497512	66(CGCTATAAAGGA,-,0.00)
mm_118196.1	chr13	107857983	107858183	-	1	NA	NA	NA	31981	NM_145456	67263	Mm.490418	NM_145456	ENSMUSG00000032846	Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.020000	0.378109	
mm_123411.1	chr14	63987684	63987884	-	1	NA	NA	NA	-4	NM_026359	67750	Mm.33864	NM_026359	ENSMUSG00000021961	4930578I06Rik	AI429111	RIKEN cDNA 4930578I06 gene	protein-coding	0.005000	0.537313	
mm_130445.1	chr15	98482681	98482881	-	1	NA	NA	NA	-98	NM_010679	16770	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0.010000	0.527363	
mm_11176.1	chr2	28700053	28700253	+	1	NA	NA	NA	-8	NM_001033874	68870	Mm.273318	NM_001033874	ENSMUSG00000026807	Ak8	1190002A17Rik|AK 8	adenylate kinase 8	protein-coding	0.080000	0.616915	
mm_142284.1	chr17	40230776	40230976	-	1	NA	NA	NA	11382	NM_009639	11572	Mm.14138	NM_009639	ENSMUSG00000025433	Crisp3	Aeg2|CRISP-3|CRS3|SGP28	cysteine-rich secretory protein 3	protein-coding	0.005000	0.373134	
mm_81709.1	chr9	111311616	111311816	+	1	NA	NA	NA	-23	NM_001164659	320429	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	0.160000	0.716418	
mm_85978.1	chr9	112164546	112164746	-	1	NA	NA	NA	21303	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.010000	0.378109	
mm_162529.1	chr1	164039735	164039935	+	1	NA	NA	NA	-8399	NM_011345	20339	Mm.5245	NM_011345	ENSMUSG00000026582	Sele	CD62E|E-selectin|ELAM-1|Elam|LECAM2	selectin, endothelial cell	protein-coding	0.010000	0.388060	
mm_35839.1	chr4	48046848	48047048	-	1	NA	NA	NA	1643	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.025000	0.482587	
mm_55152.1	chr6	51468360	51468560	-	1	NA	NA	NA	1434	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.025000	0.338308	-75(GGCTATATAAAA,-,0.00)
mm_120304.1	chr14	63140588	63140788	+	1	NA	NA	NA	18226	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.000000	0.373134	
mm_76948.1	chr8	105988652	105988852	-	1	NA	NA	NA	3021	NM_001301204	319446	Mm.248357	NM_176913	ENSMUSG00000053687	Dpep2	F630103D06Rik|MBD-2	dipeptidase 2	protein-coding	0.030000	0.557214	
mm_72283.1	chr8	75100417	75100617	+	1	NA	NA	NA	6899	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.000000	0.353234	
mm_48388.1	chr5	139813144	139813344	-	1	NA	NA	NA	-1	NM_144914	231832	Mm.482655	NM_144914	ENSMUSG00000036687	Tmem184a	Sdmg1	transmembrane protein 184a	protein-coding	0.030000	0.626866	
mm_3890.1	chr1	161175535	161175735	+	1	NA	NA	NA	-16321	NM_001195189	100502590	Mm.449990	NM_001195189		4930469G21Rik	-	RIKEN cDNA 4930469G21 gene	protein-coding	0.015000	0.467662	
mm_13333.1	chr2	102785875	102786075	+	1	NA	NA	NA	79537	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.010000	0.457711	
mm_169721.1	chr15	77902015	77902215	-	1	NA	NA	NA	26879	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.040000	0.487562	
mm_139115.1	chr17	47410428	47410628	+	1	NA	NA	NA	4183	NM_001172091	75462	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.140000	0.691542	
mm_145537.1	chr18	60805883	60806083	+	1	NA	NA	NA	2134	NM_010545	16149	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	0.000000	0.497512	-99(TTTTTTAAACAC,+,0.00)
mm_68836.1	chr7	126324825	126325025	-	1	NA	NA	NA	43120	NR_106025	102466797		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.015000	0.522388	
mm_53525.1	chr6	136532811	136533011	+	1	NA	NA	NA	14060	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.000000	0.462687	
mm_19829.1	chr2	111229485	111229685	-	1	NA	NA	NA	15	NM_026248	67575	Mm.84331	NM_026248	ENSMUSG00000027157	4930430A15Rik	-	RIKEN cDNA 4930430A15 gene	protein-coding	0.020000	0.452736	
mm_87274.1	chr10	41810753	41810953	+	1	NA	NA	NA	279	NM_001162908	140742	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.050000	0.452736	-28(AACTTTAAAAAG,-,0.00),-26(CTTTAAAAAGCA,+,0.00)
mm_39914.1	chr5	31452430	31452630	+	1	NA	NA	NA	94	NM_172993	269639	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	0.060000	0.552239	
mm_33974.1	chr4	137626736	137626936	+	1	NA	NA	NA	32647	NM_130879	170707	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	0.000000	0.348259	
mm_125212.1	chr15	34082599	34082799	+	1	NA	NA	NA	-20	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.135000	0.746269	
mm_134904.1	chr16	30187858	30188058	-	1	NA	NA	NA	79574	NM_027904	71756	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.065000	0.557214	
mm_69844.1	chr7	141364996	141365196	-	1	NA	NA	NA	14	NR_033532	320871	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0.010000	0.497512	
mm_57663.1	chr6	128487435	128487635	-	1	NA	NA	NA	39185	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.030000	0.427861	
mm_31559.1	chr4	57434375	57434575	+	1	NA	NA	NA	-70183	NR_038178	73349	Mm.393774	NR_038178		1700042G15Rik	-	RIKEN cDNA 1700042G15 gene	ncRNA	0.110000	0.746269	
mm_145397.1	chr18	57142726	57142926	+	1	NA	NA	NA	9736	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.005000	0.492537	
mm_121322.1	chr14	113314505	113314705	+	1	NA	NA	NA	1293175	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA	0.035000	0.442786	-72(GTCTATAAATGA,-,0.00)
mm_56260.1	chr6	90810039	90810239	-	1	NA	NA	NA	-16	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.060000	0.671642	
mm_97826.1	chr11	83040510	83040710	+	1	NA	NA	NA	-77	NR_073524	237887	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	pseudo	0.000000	0.502488	
mm_26428.1	chr3	142618293	142618493	+	1	NA	NA	NA	-2270	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.005000	0.333333	
mm_37059.1	chr4	116053336	116053536	-	1	NA	NA	NA	440	NM_028142	72181	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	0.030000	0.507463	
mm_4736.1	chr1	181804006	181804206	+	1	NA	NA	NA	38295	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.025000	0.517413	
mm_45475.1	chr5	69590670	69590870	-	1	NA	NA	NA	1515	NM_001038015	67980	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	0.005000	0.338308	
mm_24667.1	chr3	94491991	94492191	+	1	NA	NA	NA	9369	NR_110353	78784	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.000000	0.373134	49(TACTTTTAAAGA,-,0.00),50(ACTTTTAAAGAG,+,0.00)
mm_116790.1	chr13	53414727	53414927	-	1	NA	NA	NA	21138	NR_037991	100040421	Mm.83967	NR_037991	ENSMUSG00000107008	Gm2762	1700025I17Rik	predicted gene 2762	ncRNA	0.010000	0.532338	
mm_96286.1	chr11	63115210	63115410	+	1	NA	NA	NA	-13672	NM_001302258	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.005000	0.487562	-34(GTGTTTATAAGC,-,0.00)
mm_142458.1	chr17	45595663	45595863	-	1	NA	NA	NA	139	NM_001199114	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.075000	0.661692	
mm_70360.1	chr8	8533559	8533759	+	1	NA	NA	NA	127114	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.010000	0.457711	
mm_63602.1	chr7	128147344	128147544	+	1	NA	NA	NA	17876	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.010000	0.462687	-64(ATCCTTAAAAGC,-,0.00)
mm_103987.1	chr11	84828860	84829060	-	1	NA	NA	NA	43	NM_177564	192970	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	0.080000	0.666667	
mm_594.1	chr1	39551743	39551943	+	1	NA	NA	NA	-3003	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.025000	0.432836	
mm_102360.1	chr11	58323265	58323465	-	1	NA	NA	NA	0	NM_001256517	319475	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	0.090000	0.686567	
mm_128120.1	chr15	30458728	30458928	-	1	NA	NA	NA	286235	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.010000	0.417910	
mm_99950.1	chr11	112782115	112782315	+	1	NA	NA	NA	5	NM_011448	20682	Mm.286407	NM_011448	ENSMUSG00000000567	Sox9	2010306G03Rik|AV220920|mKIAA4243	SRY (sex determining region Y)-box 9	protein-coding	0.045000	0.512438	
mm_164526.1	chr17	4994535	4994735	+	1	NA	NA	NA	-439	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.165000	0.825871	
mm_93255.1	chr10	95514680	95514880	-	1	NA	NA	NA	-382	NM_080560	93765	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.150000	0.701493	
mm_44471.1	chr5	23418436	23418636	-	1	NA	NA	NA	15817	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.110000	0.696517	
mm_101031.1	chr11	8579862	8580062	-	1	NA	NA	NA	84573	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.005000	0.462687	-35(CACTATAAATAG,-,0.00)
mm_51134.1	chr6	68541526	68541726	+	1	NA	NA	NA	785548	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.010000	0.432836	
mm_78243.1	chr9	21632906	21633106	+	1	NA	NA	NA	16837	NM_001174078	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.000000	0.601990	
mm_151333.1	chr19	55894415	55894615	+	1	NA	NA	NA	-806	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.010000	0.398010	29(GGCTTTTAAAGT,-,0.00),30(GCTTTTAAAGTC,+,0.00)
mm_38553.1	chr4	141617926	141618126	-	1	NA	NA	NA	607	NM_145987	213989	Mm.34891	NM_145987	ENSMUSG00000043085	Tmem82	-	transmembrane protein 82	protein-coding	0.030000	0.626866	
mm_33769.1	chr4	134402083	134402283	+	1	NA	NA	NA	-729	NM_001285874	100163	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	0.030000	0.547264	
mm_107733.1	chr12	57513083	57513283	+	1	NA	NA	NA	32938	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.020000	0.378109	-33(AGTTTTAAAAGC,-,0.00),-32(GTTTTAAAAGCC,+,0.00)
mm_49469.1	chr6	29467995	29468195	+	1	NA	NA	NA	312	NM_025381	66144	Mm.371614	NM_025381	ENSMUSG00000004285	Atp6v1f	1110004G16Rik	ATPase, H+ transporting, lysosomal V1 subunit F	protein-coding	0.050000	0.592040	
mm_77004.1	chr8	107421455	107421655	-	1	NA	NA	NA	3483	NM_026277	67619	Mm.36817	NM_026277	ENSMUSG00000003848	Nob1	1700021I09Rik|ART-4|Nob1p|Psmd8bp1	NIN1/RPN12 binding protein 1 homolog	protein-coding	0.005000	0.452736	
mm_58874.1	chr7	16986826	16987026	+	1	NA	NA	NA	-7662	NM_001101535	434130	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	ENSMUSG00000041117	coiled-coil domain containing 8	protein-coding	0.005000	0.452736	
mm_83770.1	chr9	52048672	52048872	-	1	NA	NA	NA	-67	NR_023357	629557	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.155000	0.731343	
mm_110369.1	chr12	40199163	40199363	-	1	NA	NA	NA	52	NM_001033437	380755	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	0.025000	0.447761	
mm_111526.1	chr12	100206094	100206294	-	1	NA	NA	NA	6050	NM_001313934	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.025000	0.452736	
mm_20386.1	chr2	128967913	128968113	-	1	NA	NA	NA	611	NM_178404	78751	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	0.160000	0.781095	
mm_36624.1	chr4	91371938	91372138	-	1	NA	NA	NA	17	NM_010486	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding	0.130000	0.756219	
mm_141317.1	chr17	28364497	28364697	-	1	NA	NA	NA	546	NM_021478	22157	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.030000	0.597015	
mm_148336.1	chr18	84339443	84339643	-	1	NA	NA	NA	249961	NM_001033341	240476	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.015000	0.412935	
mm_83543.1	chr9	46235198	46235398	-	1	NA	NA	NA	1	NM_001289833	11814	Mm.390161	NM_023114	ENSMUSG00000032081	Apoc3	apo-CIII|apoC-III	apolipoprotein C-III	protein-coding	0.010000	0.567164	
mm_77174.1	chr8	111690604	111690804	-	1	NA	NA	NA	306	NM_025583	66473	Mm.34374	NM_025583	ENSMUSG00000031957	Ctrb1	2200008D09Rik|AI504462|Ctrb|Prt-2	chymotrypsinogen B1	protein-coding	0.010000	0.482587	
mm_54694.1	chr6	39527313	39527513	-	1	NA	NA	NA	30421	NM_172477	209773	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.030000	0.527363	
mm_3410.1	chr1	144077488	144077688	+	1	NA	NA	NA	-73439	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.010000	0.407960	2(GCCTTTTAATGA,-,0.00)
mm_9317.1	chr1	171648295	171648495	-	1	NA	NA	NA	604	NM_001347184	75345	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	0.010000	0.368159	
mm_113224.1	chr13	27061433	27061633	+	1	NA	NA	NA	3963	NM_011164	19109	Mm.1270	NM_011164	ENSMUSG00000021342	Prl	AV290867|Gha1|Prl1a1	prolactin	protein-coding	0.010000	0.422886	
mm_21639.1	chr2	164333255	164333455	-	1	NA	NA	NA	590	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.035000	0.472637	
mm_18934.1	chr2	76750398	76750598	-	1	NA	NA	NA	75183	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.015000	0.472637	
mm_10089.1	chr2	3119370	3119570	+	1	NA	NA	NA	785	NM_001347067	269233	Mm.23044	NM_001081161	ENSMUSG00000050530	Fam171a1	9630050M13Rik|AA409679	family with sequence similarity 171, member A1	protein-coding	0.010000	0.358209	
mm_63890.1	chr7	138834802	138835002	+	1	NA	NA	NA	11365	NM_001045483	69546	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0.000000	0.517413	
mm_167406.1	chr8	104322163	104322363	+	1	NA	NA	NA	36	NM_028524	75502	Mm.232593	NM_028524	ENSMUSG00000035785	Cmtm2b	1700013O04Rik|Cklfsf22|Cklfsf2b	CKLF-like MARVEL transmembrane domain containing 2B	protein-coding	0.040000	0.582090	
mm_73133.1	chr8	94974593	94974793	+	1	NA	NA	NA	-2416	NM_001198894	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.010000	0.517413	
mm_30380.1	chr3	152243787	152243987	-	1	NA	NA	NA	22433	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.020000	0.368159	
mm_165232.1	chr2	58769949	58770149	+	1	NA	NA	NA	14865	NM_029692	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.000000	0.402985	-15(CACCATATATGC,-,0.00),-13(CCATATATGCAC,+,0.00),14(CCATATATACCA,+,0.00),42(CCATATATACCA,+,0.00)
mm_168940.1	chr12	70825382	70825582	+	1	NA	NA	NA	-32	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.125000	0.731343	
mm_17592.1	chr2	30629793	30629993	-	1	NA	NA	NA	34849	NM_030137	78617	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.000000	0.492537	
mm_145744.1	chr18	64339960	64340160	+	1	NA	NA	NA	-304	NM_194268	225631	Mm.234723	NM_194268	ENSMUSG00000045991	Onecut2	C730009D12|OC-2|Oc2	one cut domain, family member 2	protein-coding	0.095000	0.711443	
mm_171735.1	chr4	94739213	94739413	+	1	NA	NA	NA	24	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	0.010000	0.517413	81(CCTTTAAGATAC,+,0.00)
mm_165670.1	chr3	89238328	89238528	-	1	NA	NA	NA	6585	NR_121683	360213	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.035000	0.527363	
mm_139307.1	chr17	48348456	48348656	+	1	NA	NA	NA	2155	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.040000	0.636816	
mm_59960.1	chr7	30427491	30427691	+	1	NA	NA	NA	4287	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.045000	0.597015	
mm_117892.1	chr13	99422797	99422997	-	1	NA	NA	NA	-10071	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.542289	-13(GCTTTACAAGGG,+,0.00)
mm_30322.1	chr3	151731700	151731900	-	1	NA	NA	NA	18159	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.005000	0.343284	
mm_10714.1	chr2	22785600	22785800	+	1	NA	NA	NA	11373	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.000000	0.353234	
mm_52004.1	chr6	92827685	92827885	+	1	NA	NA	NA	73656	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	0.015000	0.477612	
mm_22693.1	chr3	17793929	17794129	+	1	NA	NA	NA	-1633	NR_029814	723950		NR_029814	ENSMUSG00000093073	Mir124a-2	Mirn124a-2|mir-124-2|mir-124a-2	microRNA 124a-2	ncRNA	0.060000	0.587065	-27(CCTTATATCGCG,+,0.00)
mm_3409.1	chr1	144004356	144004556	+	1	NA	NA	NA	-307	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.070000	0.567164	
mm_162853.1	chr10	88605044	88605244	-	1	NA	NA	NA	8	NM_001252372	109272	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0.050000	0.547264	
mm_83819.1	chr9	53667375	53667575	-	1	NA	NA	NA	32	NM_001161618	75717	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0.135000	0.741294	
mm_26049.1	chr3	135689060	135689260	+	1	NA	NA	NA	2387	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.040000	0.497512	
mm_151362.1	chr19	55917255	55917455	+	1	NA	NA	NA	22034	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.030000	0.482587	
mm_106401.1	chr11	118909374	118909574	-	1	NA	NA	NA	98	NM_001024931	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.130000	0.721393	
mm_126705.1	chr15	85205959	85206159	+	1	NA	NA	NA	51	NM_010180	14114	Mm.297992	NM_010180	ENSMUSG00000006369	Fbln1	-	fibulin 1	protein-coding	0.145000	0.771144	
mm_133071.1	chr16	58670653	58670853	+	1	NA	NA	NA	545	NM_007757	12892	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0.100000	0.721393	
mm_85144.1	chr9	95819312	95819512	-	1	NA	NA	NA	25867	NM_001033210	102502	Mm.11869	NM_001033210	ENSMUSG00000049493	Pls1	AI427122	plastin 1 (I-isoform)	protein-coding	0.010000	0.328358	
mm_137776.1	chr17	29491703	29491903	+	1	NA	NA	NA	758	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.070000	0.587065	
mm_24896.1	chr3	96172260	96172460	+	1	NA	NA	NA	-146	NM_153053	107701	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	0.075000	0.582090	
mm_10438.1	chr2	14201450	14201650	+	1	NA	NA	NA	27026	NM_001081310	625286	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	0.000000	0.417910	86(GCATATAAAAAC,-,0.00)
mm_131069.1	chr16	4649073	4649273	+	1	NA	NA	NA	9228	NM_139307	246154	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0.025000	0.567164	
mm_114983.1	chr13	97434831	97435031	+	1	NA	NA	NA	-39	NR_110432	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.010000	0.432836	
mm_63465.1	chr7	127573581	127573781	+	1	NA	NA	NA	333	NM_026888	68961	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	0.050000	0.701493	
mm_24644.1	chr3	94377445	94377645	+	1	NA	NA	NA	113	NR_121656	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.010000	0.601990	
mm_15435.1	chr2	157278945	157279145	+	1	NA	NA	NA	-53	NM_019642	20014	Mm.22130	NM_019642	ENSMUSG00000027642	Rpn2	1300012C06Rik|AV261018|Rpn-2	ribophorin II	protein-coding	0.095000	0.691542	
mm_168608.1	chr11	75732783	75732983	+	1	NA	NA	NA	-4	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.115000	0.671642	-78(CCTTTTCTGGCG,+,0.00)
mm_136616.1	chr17	5403979	5404179	+	1	NA	NA	NA	14688	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.005000	0.497512	
mm_9087.1	chr1	168432097	168432297	-	1	NA	NA	NA	-28	NM_008783	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.010000	0.577114	
mm_88280.1	chr10	75098355	75098555	+	1	NA	NA	NA	37559	NM_001081412	110279	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.005000	0.383085	
mm_162289.1	chr1	26616906	26617106	+	1	NA	NA	NA	70454	NM_001033764	210940	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	0.015000	0.432836	
mm_148365.1	chr18	88866167	88866367	-	1	NA	NA	NA	27940	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.000000	0.363184	
mm_155577.1	chrX	77847942	77848142	+	1	NA	NA	NA	5458	NM_017471	54192	Mm.8034	NM_017471	ENSMUSG00000000003	Pbsn	PB|Prbs	probasin	protein-coding	0.010000	0.373134	
mm_143151.1	chr17	57222828	57223028	-	1	NA	NA	NA	5208	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.015000	0.577114	
mm_55665.1	chr6	72519920	72520120	-	1	NA	NA	NA	-24371	NM_007599	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.010000	0.592040	
mm_28658.1	chr3	95240974	95241174	-	1	NA	NA	NA	35	NM_001024841	229588	Mm.387177	NM_001024841	ENSMUSG00000068860	Gm128	Ment|pmis1	predicted gene 128	protein-coding	0.045000	0.646766	
mm_16108.1	chr2	169633249	169633449	+	1	NA	NA	NA	-297	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.045000	0.482587	
mm_107119.1	chr12	18609997	18610197	+	1	NA	NA	NA	95587	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.110000	0.736318	
mm_44800.1	chr5	32854117	32854317	-	1	NA	NA	NA	13	NM_194340	215476	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	0.090000	0.701493	
mm_144497.1	chr18	24238153	24238353	+	1	NA	NA	NA	32259	NM_001160404	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.005000	0.238806	
mm_9226.1	chr1	171237516	171237716	-	1	NA	NA	NA	-3267	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.020000	0.477612	
mm_35612.1	chr4	43399684	43399884	-	1	NA	NA	NA	-6718	NM_199057	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.020000	0.497512	
mm_128113.1	chr15	28025874	28026074	-	1	NA	NA	NA	-126	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.085000	0.661692	
mm_100024.1	chr11	114903525	114903725	+	1	NA	NA	NA	13584	NM_170758	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.000000	0.477612	
mm_53048.1	chr6	124715132	124715332	+	1	NA	NA	NA	2753	NR_029554	387159		NR_029554	ENSMUSG00000065474	Mir141	Mirn141|mir-141|mmu-mir-141	microRNA 141	ncRNA	0.030000	0.587065	
mm_44887.1	chr5	34660480	34660680	-	1	NA	NA	NA	201	NM_019497	14772	Mm.117076	NM_019497	ENSMUSG00000052783	Grk4	A830025H08Rik|GRK|Gprk2l|Gprk4	G protein-coupled receptor kinase 4	protein-coding	0.115000	0.691542	
mm_15240.1	chr2	154656934	154657134	+	1	NA	NA	NA	8	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.140000	0.805970	
mm_42220.1	chr5	113335173	113335373	+	1	NA	NA	NA	2372	NR_106089	102466821		NR_106089	ENSMUSG00000104840	Mir7230	mmu-mir-7230	microRNA 7230	ncRNA	0.075000	0.636816	
mm_71307.1	chr8	42246736	42246936	+	1	NA	NA	NA	419569	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	0.030000	0.447761	
mm_16989.1	chr2	18179381	18179581	-	1	NA	NA	NA	114896	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.000000	0.437811	
mm_140258.1	chr17	84512134	84512334	+	1	NA	NA	NA	339	NM_177606	213556	Mm.215159	NM_177606	ENSMUSG00000040852	Plekhh2	AI256725|E030001K05|mKIAA2028	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	protein-coding	0.100000	0.691542	
mm_6880.1	chr1	84370403	84370603	-	1	NA	NA	NA	-85858	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.010000	0.368159	
mm_61212.1	chr7	64226482	64226682	+	1	NA	NA	NA	20776	NR_029805	387207		NR_029805	ENSMUSG00000065585	Mir211	Mirn211|mir-211|mmu-mir-211	microRNA 211	ncRNA	0.030000	0.412935	
mm_93406.1	chr10	107912247	107912447	-	1	NA	NA	NA	-213	NM_001177567	628870	Mm.336090	NM_001177567	ENSMUSG00000091455	Otogl	EG628870|Gm6924	otogelin-like	protein-coding	0.020000	0.487562	-96(GTGTATTAATGG,-,0.00)
mm_115589.1	chr13	11826960	11827160	-	1	NA	NA	NA	279885	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.000000	0.417910	
mm_60316.1	chr7	44200913	44201113	+	1	NA	NA	NA	2822	NM_008693	18050	Mm.439740	NM_008693	ENSMUSG00000066515	Klk1b3	Ngfg|gamma-NGF|mGk-3	kallikrein 1-related peptidase b3	protein-coding	0.000000	0.562189	
mm_138265.1	chr17	34598058	34598258	+	1	NA	NA	NA	308	NR_073173	11596	Mm.3383	NM_007425	ENSMUSG00000015452	Ager	RAGE	advanced glycosylation end product-specific receptor	protein-coding	0.015000	0.597015	
mm_15743.1	chr2	164237322	164237522	+	1	NA	NA	NA	919	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.427861	
mm_123763.1	chr14	70205992	70206192	-	1	NA	NA	NA	-70	NM_001271407	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.070000	0.676617	
mm_126519.1	chr15	81910333	81910533	+	1	NA	NA	NA	15780	NM_030229	78929	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	0.010000	0.492537	
mm_145437.1	chr18	59062260	59062460	+	1	NA	NA	NA	-21	NR_033764	225583	Mm.209711	NM_173759	ENSMUSG00000050875	A730017C20Rik	-	RIKEN cDNA A730017C20 gene	protein-coding	0.030000	0.497512	
mm_112329.1	chr12	115862234	115862434	-	1	NA	NA	NA	-166540	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.000000	0.462687	
mm_60578.1	chr7	44482184	44482384	+	1	NA	NA	NA	-2233	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.457711	-74(CCTTATATATAC,+,0.00),-14(TCTTTAAGAGAG,+,0.00)
mm_140708.1	chr17	14909414	14909614	-	1	NA	NA	NA	33610	NM_175173	71682	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	0.010000	0.447761	
mm_8978.1	chr1	165627559	165627759	-	1	NA	NA	NA	6882	NM_001001880	68481	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.000000	0.268657	
mm_41130.1	chr5	87788453	87788653	+	1	NA	NA	NA	14103	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.005000	0.318408	
mm_2440.1	chr1	98131351	98131551	+	1	NA	NA	NA	-16	NR_040439	69030	Mm.402692	NR_040439	ENSMUSG00000100182	1810006J02Rik	-	RIKEN cDNA 1810006J02 gene	ncRNA	0.015000	0.417910	-33(TGCTATATAAGG,-,0.00)
mm_163744.1	chr13	119732673	119732873	-	1	NA	NA	NA	23109	NM_175538	245269	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0.030000	0.502488	
mm_150010.1	chr19	29312157	29312357	+	1	NA	NA	NA	13061	NM_013754	27356	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding	0.005000	0.313433	
mm_27240.1	chr3	36565213	36565413	-	1	NA	NA	NA	6683	NM_009828	12428	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	0.000000	0.398010	
mm_25689.1	chr3	122245703	122245903	+	1	NA	NA	NA	246	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.150000	0.796020	
mm_141836.1	chr17	34637923	34638123	-	1	NA	NA	NA	-6860	NM_019873	56299	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0.010000	0.393035	
mm_118620.1	chr14	21076096	21076296	+	1	NA	NA	NA	44	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.110000	0.716418	
mm_30717.1	chr4	13096396	13096596	+	1	NA	NA	NA	189659	NM_001171801	208820	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding	0.040000	0.527363	
mm_138632.1	chr17	35861144	35861344	+	1	NA	NA	NA	-74	NM_134122	106582	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding	0.095000	0.671642	
mm_61270.1	chr7	66196058	66196258	+	1	NA	NA	NA	86643	NM_001081163	269941	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.005000	0.462687	10(CGCTCTAAGAGC,-,0.00)
mm_98400.1	chr11	94327985	94328185	+	1	NA	NA	NA	84	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.135000	0.796020	
mm_110968.1	chr12	76937738	76937938	-	1	NA	NA	NA	24410	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.030000	0.502488	
mm_135930.1	chr16	73912997	73913197	-	1	NA	NA	NA	428970	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.000000	0.358209	
mm_100727.1	chr11	3931425	3931625	-	1	NA	NA	NA	436	NM_001130459	21452	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	0.015000	0.542289	
mm_107633.1	chr12	52079009	52079209	+	1	NA	NA	NA	-18637	NM_029760	76826	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	0.020000	0.517413	
mm_75264.1	chr8	40634663	40634863	-	1	NA	NA	NA	29	NM_001040699	54384	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.135000	0.776119	
mm_166168.1	chr5	23434483	23434683	+	1	NA	NA	NA	154	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.100000	0.686567	
mm_112949.1	chr13	21023862	21024062	+	1	NA	NA	NA	49337	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.005000	0.462687	
mm_127220.1	chr15	99393167	99393367	+	1	NA	NA	NA	48	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.100000	0.676617	
mm_69548.1	chr7	135697499	135697699	-	1	NA	NA	NA	18780	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.005000	0.492537	
mm_49387.1	chr6	24857885	24858085	+	1	NA	NA	NA	-12	NM_028957	74468	Mm.251601	NM_028957	ENSMUSG00000029678	Hyal5	4933439A12Rik	hyaluronoglucosaminidase 5	protein-coding	0.000000	0.427861	
mm_144339.1	chr18	14783108	14783308	+	1	NA	NA	NA	-37	NM_001100449	72504	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	0.110000	0.641791	5(GGCTATATAAAC,-,0.00)
mm_89588.1	chr10	95801112	95801312	+	1	NA	NA	NA	-139451	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.010000	0.462687	
mm_164025.1	chr14	75845066	75845266	-	1	NA	NA	NA	-90	NM_009429	22070	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	0.125000	0.741294	
mm_38586.1	chr4	141821315	141821515	-	1	NA	NA	NA	4590	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.015000	0.502488	
mm_38605.1	chr4	141860539	141860739	-	1	NA	NA	NA	-14280	NM_001033875	76701	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	0.045000	0.597015	
mm_123521.1	chr14	66558417	66558617	-	1	NA	NA	NA	-76734	NM_001271759	11549	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	0.005000	0.462687	
mm_68969.1	chr7	126584542	126584742	-	1	NA	NA	NA	-366	NM_138310	171504	Mm.170665	NM_138310	ENSMUSG00000042759	Apobr	Apob-48r|Apob48r	apolipoprotein B receptor	protein-coding	0.015000	0.532338	
mm_57684.1	chr6	128512137	128512337	-	1	NA	NA	NA	14483	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.005000	0.383085	
mm_58660.1	chr7	6717746	6717946	+	1	NA	NA	NA	11086	NR_023846	100169889	Mm.491213	NR_023846		Peg3os	Apeg3|Peg3as	Peg3 opposite strand	ncRNA	0.025000	0.502488	
mm_163283.1	chr11	116657052	116657252	+	1	NA	NA	NA	44	NM_001163318	100038570	Mm.390349	NM_001163318	ENSMUSG00000075410	Prcd	Gm11744|OTTMUSG00000003947	progressive rod cone degeneration protein	protein-coding	0.030000	0.582090	
mm_52872.1	chr6	122342257	122342457	+	1	NA	NA	NA	-2130	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.020000	0.462687	
mm_147930.1	chr18	65970093	65970293	-	1	NA	NA	NA	-15	NM_145493	225644	Mm.192285	NM_145493	ENSMUSG00000024519	Cplx4	A930004D23Rik|CPXIV|Gm957	complexin 4	protein-coding	0.030000	0.477612	
mm_38656.1	chr4	143390087	143390287	-	1	NA	NA	NA	-4254	NM_031377	83491	Mm.190607	NM_031377	ENSMUSG00000041805	Pramel1	-	preferentially expressed antigen in melanoma-like 1	protein-coding	0.010000	0.472637	
mm_7247.1	chr1	93635656	93635856	-	1	NA	NA	NA	-29	NM_021537	59041	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.090000	0.656716	
mm_8944.1	chr1	164438085	164438285	-	1	NA	NA	NA	20170	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.005000	0.318408	
mm_58087.1	chr6	137169592	137169792	-	1	NA	NA	NA	26	NM_001164214	232441	Mm.46233	NM_181988	ENSMUSG00000030222	Rerg	-	RAS-like, estrogen-regulated, growth-inhibitor	protein-coding	0.105000	0.711443	
mm_50776.1	chr6	53680884	53681084	+	1	NA	NA	NA	107610	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.040000	0.577114	
mm_140921.1	chr17	24205428	24205628	-	1	NA	NA	NA	34	NM_001163851	224617	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	0.140000	0.761194	
mm_105918.1	chr11	115001544	115001744	-	1	NA	NA	NA	236	NM_134158	140497	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0.015000	0.507463	
mm_140288.1	chr17	85395707	85395907	+	1	NA	NA	NA	222589	NR_038084	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.020000	0.422886	
mm_24741.1	chr3	95286660	95286860	+	1	NA	NA	NA	3825	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.025000	0.532338	
mm_67441.1	chr7	80387786	80387986	-	1	NA	NA	NA	60	NM_010194	14159	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.050000	0.606965	
mm_20801.1	chr2	144270363	144270563	-	1	NA	NA	NA	109	NM_024225	69178	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	0.120000	0.751244	
mm_78996.1	chr9	45405872	45406072	+	1	NA	NA	NA	-105	NM_007503	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.000000	0.587065	
mm_156308.1	chrX	136837980	136838180	+	1	NA	NA	NA	15334	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.000000	0.363184	-85(CAATATATAAGG,-,0.00)
mm_28805.1	chr3	96240228	96240428	-	1	NA	NA	NA	6	NM_013549	15267	Mm.5220	NM_013549	ENSMUSG00000064220	Hist2h2aa1	AI448581|H2a-614|H2a-615|Hist2	histone cluster 2, H2aa1	protein-coding	0.115000	0.597015	2(GTCTATAAAAGG,-,0.00)
mm_19671.1	chr2	103454135	103454335	-	1	NA	NA	NA	30167	NM_010125	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.005000	0.373134	4(GTCCTTATAAGC,-,0.00),6(CCTTATAAGCAA,+,0.00)
mm_35798.1	chr4	46549160	46549360	-	1	NA	NA	NA	-13119	NM_029077	74735	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	0.025000	0.537313	
mm_51986.1	chr6	92091351	92091551	+	1	NA	NA	NA	33	NM_011630	22026	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.155000	0.711443	
mm_172508.1	chr7	70193144	70193344	+	1	NA	NA	NA	144578	NR_131145	624549	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	-	predicted gene, 29683	ncRNA	0.035000	0.557214	
mm_166661.1	chr6	88578212	88578412	+	1	NA	NA	NA	49136	NM_001278671	74589	Mm.196226	NM_029013	ENSMUSG00000033182	Kbtbd12	4833415F11Rik|4933428M03Rik|Klhdc6	kelch repeat and BTB (POZ) domain containing 12	protein-coding	0.015000	0.477612	
mm_49700.1	chr6	34179170	34179370	+	1	NA	NA	NA	-2216	NM_021435	58246	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0.005000	0.482587	
mm_171987.1	chr5	93643744	93643944	+	1	NA	NA	NA	27619	NM_001164284	381654	Mm.326591	NM_001164284	ENSMUSG00000070686	C87414	-	expressed sequence C87414	protein-coding	0.055000	0.626866	
mm_96598.1	chr11	69090899	69091099	+	1	NA	NA	NA	2471	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.005000	0.497512	
mm_45131.1	chr5	48781105	48781305	-	1	NA	NA	NA	108352	NM_030265	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.000000	0.407960	
mm_89254.1	chr10	87859161	87859361	+	1	NA	NA	NA	209	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.015000	0.422886	
mm_107164.1	chr12	24679685	24679885	+	1	NA	NA	NA	2010	NM_138686	12879	Mm.52265	NM_138686	ENSMUSG00000062563	Cys1	2900006B19Rik|AV218859|Ccap|ck|cpk	cystin 1	protein-coding	0.005000	0.457711	
mm_54762.1	chr6	41218464	41218664	-	1	NA	NA	NA	-83708	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.030000	0.492537	
mm_115981.1	chr13	24272758	24272958	-	1	NA	NA	NA	7932	NM_001311122	68732	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0.005000	0.393035	
mm_111826.1	chr12	107123614	107123814	-	1	NA	NA	NA	-407390	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.025000	0.572139	
mm_65956.1	chr7	30428476	30428676	-	1	NA	NA	NA	5272	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.015000	0.512438	
mm_20246.1	chr2	126499620	126499820	-	1	NA	NA	NA	-8167	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	0.030000	0.457711	
mm_130796.1	chr15	101690411	101690611	-	1	NA	NA	NA	3794	NM_008476	16687	Mm.302399	NM_008476	ENSMUSG00000058354	Krt6a	2310016L08Rik|Krt2-6a|Krt2-6c|MK6a|mK6[a]	keratin 6A	protein-coding	0.010000	0.562189	
mm_11890.1	chr2	49744432	49744632	+	1	NA	NA	NA	-43154	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.005000	0.582090	
mm_148200.1	chr18	79109773	79109973	-	1	NA	NA	NA	-482	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.165000	0.810945	
mm_44004.1	chr5	146948639	146948839	+	1	NA	NA	NA	82	NM_025652	66596	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0.145000	0.726368	
mm_36520.1	chr4	84546364	84546564	-	1	NA	NA	NA	128622	NM_172870	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.010000	0.497512	
mm_146489.1	chr18	90523435	90523635	+	1	NA	NA	NA	13381	NM_198295	67988	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.020000	0.373134	
mm_97913.1	chr11	83525683	83525883	+	1	NA	NA	NA	-3684	NM_001045543	629303	Mm.390417	NM_001045543	ENSMUSG00000018925	Heatr9	Gm11435|OTTMUSG00000000990	HEAT repeat containing 9	protein-coding	0.015000	0.482587	
mm_74595.1	chr8	11634937	11635137	-	1	NA	NA	NA	-1	NR_030781	102334	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	0.105000	0.686567	
mm_24777.1	chr3	95538623	95538823	+	1	NA	NA	NA	11937	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.020000	0.412935	
mm_85183.1	chr9	96637162	96637362	-	1	NA	NA	NA	-5759	NM_053268	114713	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.025000	0.412935	
mm_71034.1	chr8	33653419	33653619	+	1	NA	NA	NA	281	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.165000	0.771144	
mm_144842.1	chr18	36560567	36560767	+	1	NA	NA	NA	64	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.095000	0.676617	
mm_129287.1	chr15	77163005	77163205	-	1	NA	NA	NA	-9293	NM_001286418	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.005000	0.512438	
mm_125478.1	chr15	54571299	54571499	+	1	NA	NA	NA	33	NM_178920	105853	Mm.410994	NM_178920	ENSMUSG00000024479	Mal2	AI461653	mal, T cell differentiation protein 2	protein-coding	0.170000	0.791045	
mm_84367.1	chr9	64810999	64811199	-	1	NA	NA	NA	88	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.065000	0.646766	
mm_41727.1	chr5	102481551	102481751	+	1	NA	NA	NA	260	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.065000	0.676617	
mm_99051.1	chr11	99047998	99048198	+	1	NA	NA	NA	6838	NM_010517	16010	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.020000	0.567164	
mm_106444.1	chr11	119836832	119837032	-	1	NA	NA	NA	-2567	NR_045312	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	0.005000	0.507463	
mm_125228.1	chr15	34133430	34133630	+	1	NA	NA	NA	50811	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.010000	0.482587	
mm_12800.1	chr2	79707822	79708022	+	1	NA	NA	NA	142	NM_001290743	75276	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0.010000	0.482587	
mm_117307.1	chr13	67421328	67421528	-	1	NA	NA	NA	-10	NM_177811	328274	Mm.222470	NM_177811	ENSMUSG00000055560	Zfp459	9930025G17Rik|Rslcan-14	zinc finger protein 459	protein-coding	0.040000	0.517413	
mm_79345.1	chr9	53536948	53537148	+	1	NA	NA	NA	1	NM_001081152	244879	Mm.116713	NM_001081152	ENSMUSG00000033054	Npat	6820401K01|AI427561|BB112559	nuclear protein in the AT region	protein-coding	0.105000	0.631841	
mm_17101.1	chr2	23523974	23524174	-	1	NA	NA	NA	48030	NM_029773	76857	Mm.276415	NM_029773	ENSMUSG00000026771	Spopl	4921517N04Rik|AU014935|BB233739|E430033K04Rik	speckle-type POZ protein-like	protein-coding	0.010000	0.293532	
mm_99557.1	chr11	103649472	103649672	+	1	NA	NA	NA	63	NM_001033212	104582	Mm.44618	NM_001033212	ENSMUSG00000046215	Rprml	AW049332	reprimo-like	protein-coding	0.120000	0.716418	
mm_129844.1	chr15	83158816	83159016	-	1	NA	NA	NA	9271	NR_004432	104307	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.025000	0.577114	
mm_78541.1	chr9	35305128	35305328	+	1	NA	NA	NA	24123	NR_040715	71133	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.020000	0.363184	
mm_30821.1	chr4	21869597	21869797	+	1	NA	NA	NA	-9978	NM_172687	230027	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	0.015000	0.363184	
mm_24852.1	chr3	95819221	95819421	+	1	NA	NA	NA	-368	NM_001081293	75137	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	0.045000	0.427861	
mm_96189.1	chr11	61855036	61855236	+	1	NA	NA	NA	-44	NM_013881	29869	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.160000	0.736318	
mm_32498.1	chr4	108458720	108458920	+	1	NA	NA	NA	-606	NM_175472	230594	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.010000	0.398010	-27(CCCTTTATAAAA,-,0.00),-25(CTTTATAAAACC,+,0.00)
mm_147080.1	chr18	35627069	35627269	-	1	NA	NA	NA	58	NM_011397	20522	Mm.22702	NM_011397	ENSMUSG00000024354	Slc23a1	D18Ucla2|SVCT1|Slc23a2|YSPL3	solute carrier family 23 (nucleobase transporters), member 1	protein-coding	0.020000	0.532338	
mm_14412.1	chr2	130371248	130371448	+	1	NA	NA	NA	26281	NM_019696	56264	Mm.112701	NM_019696	ENSMUSG00000027408	Cpxm1	AA986902|Cpx-1|Cpx1|Cpxm	carboxypeptidase X 1 (M14 family)	protein-coding	0.005000	0.432836	
mm_134772.1	chr16	23609707	23609907	-	1	NA	NA	NA	-112	NM_023386	67775	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.040000	0.457711	
mm_169961.1	chr16	94359262	94359462	-	1	NA	NA	NA	10968	NM_001159619	56176	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0.025000	0.482587	
mm_136787.1	chr17	10840283	10840483	+	1	NA	NA	NA	24	NM_016694	50873	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.105000	0.696517	
mm_99594.1	chr11	104321251	104321451	+	1	NA	NA	NA	89915	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.015000	0.507463	
mm_142345.1	chr17	43611942	43612142	-	1	NA	NA	NA	18257	NM_001161366	210510	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	0.065000	0.467662	26(TACTTTTAAAAG,-,0.00),27(ACTTTTAAAAGG,-,0.00),28(CTTTTAAAAGGC,+,0.00)
mm_97077.1	chr11	73009586	73009786	+	1	NA	NA	NA	-9322	NM_018883	55984	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	0.025000	0.572139	
mm_78371.1	chr9	27317268	27317468	+	1	NA	NA	NA	18140	NM_001129787	235086	Mm.48719	NM_001033323	ENSMUSG00000034275	Igsf9b	AI414108|AI854107|Gm508|mKIAA1030	immunoglobulin superfamily, member 9B	protein-coding	0.035000	0.532338	
mm_83562.1	chr9	46257599	46257799	-	1	NA	NA	NA	-10909	NM_080434	66113	Mm.29738	NM_080434	ENSMUSG00000032079	Apoa5	1300007O05Rik|Apoav|RAP3	apolipoprotein A-V	protein-coding	0.010000	0.522388	
mm_40799.1	chr5	67613113	67613313	+	1	NA	NA	NA	5330	NM_001033415	330096	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.020000	0.437811	22(GCTTTAATGTGC,+,0.00)
mm_107780.1	chr12	61523770	61523970	+	1	NA	NA	NA	703	NM_001310586	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.050000	0.527363	
mm_77352.1	chr8	119585736	119585936	-	1	NA	NA	NA	10601	NM_026648	68270	Mm.41977	NM_026648	ENSMUSG00000031831	Dnaaf1	4930457P18Rik|Lrrc50	dynein, axonemal assembly factor 1	protein-coding	0.015000	0.497512	50(GTCTAGAAAAAG,-,0.00)
mm_130390.1	chr15	97884836	97885036	-	1	NA	NA	NA	23360	NM_009504	22337	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D receptor	protein-coding	0.025000	0.601990	
mm_118112.1	chr13	103921509	103921709	-	1	NA	NA	NA	-1023	NM_001005868	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.100000	0.676617	
mm_60068.1	chr7	31302585	31302785	+	1	NA	NA	NA	-84	NM_207262	381970	Mm.333771	NM_207262	ENSMUSG00000036521	Scgb2b2	Abpbg2|Abpe|lacrimal	secretoglobin, family 2B, member 2	protein-coding	0.000000	0.502488	44(TGGTTTATATGG,-,0.00)
mm_122781.1	chr14	54410104	54410304	-	1	NA	NA	NA	-732	NM_001253680	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.020000	0.552239	
mm_31900.1	chr4	83525523	83525723	+	1	NA	NA	NA	78	NM_001081012	320226	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	0.070000	0.631841	
mm_17376.1	chr2	26964220	26964420	-	1	NA	NA	NA	66	NM_207234	227656	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	0.100000	0.631841	
mm_38009.1	chr4	133751524	133751724	-	1	NA	NA	NA	1987	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.010000	0.447761	
mm_29886.1	chr3	131233813	131234013	-	1	NA	NA	NA	38188	NM_008212	15107	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.010000	0.378109	
mm_89080.1	chr10	83360135	83360335	+	1	NA	NA	NA	14	NM_026579	28109	Mm.196210	NM_026579	ENSMUSG00000020255	D10Wsu102e	AI747614|C430041I18Rik	DNA segment, Chr 10, Wayne State University 102, expressed	protein-coding	0.075000	0.626866	
mm_108309.1	chr12	79490049	79490249	+	1	NA	NA	NA	192798	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.025000	0.512438	
mm_161636.1	chr16	90260173	90260373	-	1	NA	NA	NA	24230	NM_178923	224432	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.015000	0.452736	
mm_162135.1	chrX	73265289	73265489	-	1	NA	NA	NA	1	NM_011727	22446	Mm.336117	NM_011727	ENSMUSG00000058147	Xlr3c	Xlr3b	X-linked lymphocyte-regulated 3C	protein-coding	0.050000	0.601990	
mm_126677.1	chr15	84669546	84669746	+	1	NA	NA	NA	6440	NM_001346662	109270	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0.020000	0.592040	
mm_10830.1	chr2	24386438	24386638	+	1	NA	NA	NA	1141	NM_177611	215632	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.035000	0.592040	
mm_84183.1	chr9	60134725	60134925	-	1	NA	NA	NA	6395	NM_172444	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.005000	0.293532	
mm_124479.1	chr14	121505156	121505356	-	1	NA	NA	NA	-2	NM_053079	56643	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	0.055000	0.656716	
mm_111423.1	chr12	91589887	91590087	-	1	NA	NA	NA	-338	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.140000	0.756219	-7(CGCTATATAAAG,-,0.00),-5(CTATATAAAGGG,+,0.00),-5(CTATATAAAGGG,-,0.00)
mm_167535.1	chr9	21291653	21291853	+	1	NA	NA	NA	-544	NM_009878	12581	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	protein-coding	0.045000	0.452736	
mm_158655.1	chrX	155624041	155624241	-	1	NA	NA	NA	-814	NM_001093750	211612	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	0.070000	0.606965	-83(GATCTTAAAAGG,-,0.00)
mm_146832.1	chr18	22171308	22171508	-	1	NA	NA	NA	-12	NM_027616	70950	Mm.235716	NM_027616	ENSMUSG00000024306	Ccdc178	4921528I01Rik	coiled coil domain containing 178	protein-coding	0.020000	0.597015	
mm_100.1	chr1	9545284	9545484	+	1	NA	NA	NA	-24	NM_021511	59014	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	0.090000	0.611940	
mm_98115.1	chr11	87112979	87113179	+	1	NA	NA	NA	75	NR_029652	723834		NR_029652	ENSMUSG00000065589	Mir301	Mirn301|mir-301a|mmu-mir-301	microRNA 301	ncRNA	0.020000	0.422886	
mm_63015.1	chr7	121032397	121032597	+	1	NA	NA	NA	-1948	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.000000	0.477612	
mm_157561.1	chrX	52165224	52165424	-	1	NA	NA	NA	-401	NM_008150	14735	Mm.1528	NM_008150	ENSMUSG00000031119	Gpc4	9530073D23Rik|AF311610|AI385680|AI661372|K-glypican	glypican 4	protein-coding	0.085000	0.731343	
mm_8787.1	chr1	161251415	161251615	-	1	NA	NA	NA	-305	NM_007453	11758	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	0.005000	0.457711	
mm_5654.1	chr1	40790564	40790764	-	1	NA	NA	NA	-7	NM_172499	211798	Mm.235443	NM_172499	ENSMUSG00000041945	Mfsd9	4931419K03Rik	major facilitator superfamily domain containing 9	protein-coding	0.100000	0.711443	
mm_145962.1	chr18	67774903	67775103	+	1	NA	NA	NA	127	NM_001039088	72124	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	0.145000	0.741294	
mm_50018.1	chr6	41115899	41116099	+	1	NA	NA	NA	-80490	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.517413	
mm_163962.1	chr14	54966313	54966513	-	1	NA	NA	NA	194	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.015000	0.572139	
mm_65867.1	chr7	29505360	29505560	-	1	NA	NA	NA	0	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.030000	0.611940	
mm_141378.1	chr17	29078835	29079035	-	1	NA	NA	NA	191	NR_036469	100504267	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|OTTMUSG00000031656|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0.020000	0.472637	
mm_11545.1	chr2	32657404	32657604	+	1	NA	NA	NA	10909	NM_001146348	13805	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	0.020000	0.557214	
mm_152329.1	chr19	9954382	9954582	-	1	NA	NA	NA	-26118	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.015000	0.547264	
mm_148681.1	chr19	5688647	5688847	+	1	NA	NA	NA	161	NM_144868	104401	Mm.329650	NM_144868	ENSMUSG00000054874	Pcnx3	Pcnxl3|mKIAA4073	pecanex homolog 3	protein-coding	0.095000	0.606965	
mm_78538.1	chr9	35211338	35211538	+	1	NA	NA	NA	235	NM_026130	67398	Mm.284688	NM_026130	ENSMUSG00000032042	Srpr	1300011P19Rik|D11Mgi27|Srpra	signal recognition particle receptor ('docking protein')	protein-coding	0.090000	0.621891	
mm_171278.1	chr3	88832387	88832587	-	1	NA	NA	NA	0	NR_015498	319830	Mm.400394	NR_015498		1500004A13Rik	5430404N14Rik|BB132176	RIKEN cDNA 1500004A13 gene	ncRNA	0.030000	0.577114	
mm_112960.1	chr13	21180112	21180312	+	1	NA	NA	NA	281	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.135000	0.796020	
mm_86056.1	chr9	114564225	114564425	-	1	NA	NA	NA	44	NM_001042503	636931	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	0.075000	0.606965	
mm_43416.1	chr5	135984060	135984260	+	1	NA	NA	NA	4055	NM_011776	22788	Mm.1381	NM_011776	ENSMUSG00000004948	Zp3	Zp-3	zona pellucida glycoprotein 3	protein-coding	0.010000	0.522388	-34(GGGTTTATATGG,-,0.00)
mm_133454.1	chr16	88829023	88829223	+	1	NA	NA	NA	114	NM_013713	26560	Mm.86430	NM_013713	ENSMUSG00000022931	Krtap15	Krtap15-1|Pmg-2|Pmg2	keratin associated protein 15	protein-coding	0.000000	0.467662	
mm_55083.1	chr6	49214723	49214923	-	1	NA	NA	NA	131	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.085000	0.636816	
mm_125131.1	chr15	30333111	30333311	+	1	NA	NA	NA	160618	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.005000	0.427861	
mm_132133.1	chr16	31878776	31878976	+	1	NA	NA	NA	66	NM_013900	30060	Mm.30988	NM_013900	ENSMUSG00000022780	Mfi2	CD228|MTf|Meltf	antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5	protein-coding	0.035000	0.611940	-31(GCTTAAATAGTG,+,0.00)
mm_83083.1	chr9	40191023	40191223	-	1	NA	NA	NA	-1193	NM_030713	80902	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	0.005000	0.383085	
mm_17444.1	chr2	28524419	28524619	-	1	NA	NA	NA	-8945	NM_001145835	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.020000	0.552239	60(TGCCTTAAAAAG,-,0.00),62(CCTTAAAAAGAC,+,0.00)
mm_96320.1	chr11	63989697	63989897	+	1	NA	NA	NA	25571	NR_131111	78883	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	0.020000	0.437811	
mm_149028.1	chr19	8770946	8771146	+	1	NA	NA	NA	50	NM_025791	66836	Mm.440071	NM_025791	ENSMUSG00000010097	Tmem223	0610006I08Rik	transmembrane protein 223	protein-coding	0.090000	0.636816	
mm_131725.1	chr16	21794251	21794451	+	1	NA	NA	NA	4	NR_037957	100043489	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	0.100000	0.646766	
mm_143705.1	chr17	80598350	80598550	-	1	NA	NA	NA	-34616	NM_001033443	381113	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.010000	0.313433	-97(GGCTATTAATGA,-,0.00)
mm_42353.1	chr5	114911488	114911688	+	1	NA	NA	NA	-11652	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.010000	0.427861	
mm_24730.1	chr3	95282904	95283104	+	1	NA	NA	NA	69	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.060000	0.621891	
mm_118639.1	chr14	21477188	21477388	+	1	NA	NA	NA	-22482	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.005000	0.552239	
mm_5698.1	chr1	43187186	43187386	-	1	NA	NA	NA	9475	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.000000	0.477612	
mm_47037.1	chr5	116021609	116021809	-	1	NA	NA	NA	2719	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.030000	0.557214	
mm_456.1	chr1	36265329	36265529	+	1	NA	NA	NA	7996	NM_153408	214854	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.015000	0.487562	
mm_134571.1	chr16	20364063	20364263	-	1	NA	NA	NA	-38759	NM_183158	224044	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.015000	0.567164	
mm_68711.1	chr7	119892943	119893143	-	1	NA	NA	NA	2415	NM_173408	233805	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0.000000	0.348259	
mm_8998.1	chr1	165766523	165766723	-	1	NA	NA	NA	2843	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.020000	0.447761	
mm_111882.1	chr12	108179118	108179318	-	1	NA	NA	NA	66	NM_028262	52690	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0.155000	0.791045	
mm_3776.1	chr1	156558683	156558883	+	1	NA	NA	NA	-4	NM_009595	11352	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0.125000	0.746269	
mm_147221.1	chr18	38150705	38150905	-	1	NA	NA	NA	58957	NM_029357	75599	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.000000	0.492537	-75(GTTTCTAAAAGC,-,0.00)
mm_62888.1	chr7	115109914	115110114	+	1	NA	NA	NA	158740	NR_040319	101786	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0.025000	0.522388	
mm_53434.1	chr6	134079565	134079765	+	1	NA	NA	NA	43965	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.010000	0.373134	
mm_106744.1	chr12	3908125	3908325	+	1	NA	NA	NA	16481	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.010000	0.398010	-41(TTCTATAAAAAC,-,0.00)
mm_1818.1	chr1	82339001	82339201	+	1	NA	NA	NA	52	NM_001122685	76867	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	0.015000	0.517413	
mm_4777.1	chr1	182957546	182957746	+	1	NA	NA	NA	2858	NM_016928	53791	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.015000	0.487562	
mm_135302.1	chr16	38705722	38705922	-	1	NA	NA	NA	7213	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.015000	0.383085	
mm_42422.1	chr5	115327134	115327334	+	1	NA	NA	NA	57	NR_036616	108014	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0.180000	0.805970	
mm_99172.1	chr11	100846210	100846410	+	1	NA	NA	NA	4275	NM_001113563	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.015000	0.437811	
mm_118965.1	chr14	27622299	27622499	+	1	NA	NA	NA	-8	NM_001347497	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	0.130000	0.805970	
mm_55401.1	chr6	60828005	60828205	-	1	NA	NA	NA	899	NM_001042451	20617	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alphaSYN	synuclein, alpha	protein-coding	0.005000	0.512438	
mm_147236.1	chr18	38284225	38284425	-	1	NA	NA	NA	76	NM_017378	53601	Mm.12862	NM_017378	ENSMUSG00000024440	Pcdh12	Pcdh14|VE-cad-2	protocadherin 12	protein-coding	0.015000	0.502488	
mm_126663.1	chr15	84321850	84322050	+	1	NA	NA	NA	-2770	NM_022321	64099	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0.015000	0.567164	
mm_35139.1	chr4	11386624	11386824	-	1	NA	NA	NA	54	NM_001347052	207920	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	0.040000	0.611940	
mm_17814.1	chr2	33718683	33718883	-	1	NA	NA	NA	77590	NR_046275	100504399	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	0.015000	0.517413	
mm_21513.1	chr2	163626224	163626424	-	1	NA	NA	NA	-18526	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.005000	0.492537	
mm_8772.1	chr1	161034882	161035082	-	1	NA	NA	NA	-184	NR_002840	14455	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	0.060000	0.696517	
mm_97097.1	chr11	73213295	73213495	+	1	NA	NA	NA	13913	NM_029031	74637	Mm.200905	NM_029031	ENSMUSG00000005951	Shpk	4930431K22Rik|AI194947|AW260459|Carkl	sedoheptulokinase	protein-coding	0.010000	0.517413	
mm_61285.1	chr7	67421238	67421438	+	1	NA	NA	NA	-48480	NM_001291195	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.010000	0.497512	75(GTCTTTAAACCC,+,0.00)
mm_68895.1	chr7	126448726	126448926	-	1	NA	NA	NA	14247	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.025000	0.537313	
mm_60011.1	chr7	30731076	30731276	+	1	NA	NA	NA	-1642	NM_027215	69804	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	0.000000	0.412935	31(CACTATATAGAG,-,0.00)
mm_113633.1	chr13	42051661	42051861	+	1	NA	NA	NA	-260	NM_007772	110521	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.130000	0.776119	
mm_134820.1	chr16	25960153	25960353	-	1	NA	NA	NA	145531	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.015000	0.363184	
mm_33982.1	chr4	137717243	137717443	+	1	NA	NA	NA	-7118	NR_138592	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.020000	0.562189	
mm_161986.1	chr19	29422093	29422293	+	1	NA	NA	NA	11274	NM_021396	58205	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.015000	0.482587	-85(CTCCAGAAAAGG,-,0.00)
mm_91909.1	chr10	60277376	60277576	-	1	NA	NA	NA	-152	NM_001146123	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.045000	0.552239	
mm_95650.1	chr11	53724403	53724603	+	1	NA	NA	NA	3709	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.015000	0.512438	
mm_63861.1	chr7	135683898	135684098	+	1	NA	NA	NA	-31684	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.000000	0.487562	58(GAGTTTTAAAAG,-,0.00),59(AGTTTTAAAAGG,-,0.00),60(GTTTTAAAAGGC,+,0.00)
mm_119303.1	chr14	34746739	34746939	+	1	NA	NA	NA	72911	NM_001301330	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.000000	0.288557	-62(TGGTTTATAGGG,-,0.00)
mm_118811.1	chr14	25460378	25460578	+	1	NA	NA	NA	1293	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.085000	0.696517	
mm_92369.1	chr10	76027978	76028178	-	1	NA	NA	NA	-4534	NM_177475	64453	Mm.80609	NM_177475	ENSMUSG00000049764	Zfp280b	D10Jhu82e|Suhw2	zinc finger protein 280B	protein-coding	0.010000	0.587065	
mm_86592.1	chr10	13129480	13129680	+	1	NA	NA	NA	38735	NR_131912	338438		NR_131912		Hymai	-	hydatidiform mole associated and imprinted transcript	ncRNA	0.010000	0.393035	
mm_81323.1	chr9	108490589	108490789	+	1	NA	NA	NA	13	NM_027804	71472	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	0.085000	0.646766	
mm_74219.1	chr8	124021384	124021584	+	1	NA	NA	NA	-175	NM_133966	102162	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	0.150000	0.721393	
mm_57748.1	chr6	129097608	129097808	-	1	NA	NA	NA	3195	NM_153506	232409	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0.000000	0.417910	
mm_109027.1	chr12	103950714	103950914	+	1	NA	NA	NA	6083	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	0.010000	0.427861	-35(ACCTTTAAAGAG,-,0.00)
mm_127314.1	chr15	100251616	100251816	+	1	NA	NA	NA	23857	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.015000	0.477612	-32(GACTTTAAAGAC,-,0.00)
mm_82772.1	chr9	26977757	26977957	-	1	NA	NA	NA	21692	NM_025862	66948	Mm.289244	NM_025862	ENSMUSG00000031969	Acad8	2310016C19Rik|AI786953	acyl-Coenzyme A dehydrogenase family, member 8	protein-coding	0.015000	0.497512	-34(CAGCATTAAAGG,-,0.00)
mm_162402.1	chr1	85330335	85330535	+	1	NA	NA	NA	-59869	NM_001037909	620078	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik|OTTMUSG00000029174	RIKEN cDNA C130026I21 gene	protein-coding	0.005000	0.462687	-89(GGCTTTTAATAG,-,0.00),-87(CTTTTAATAGGA,+,0.00)
mm_3578.1	chr1	151132854	151133054	+	1	NA	NA	NA	-5080	NR_038011	402734	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.020000	0.452736	
mm_104145.1	chr11	87045753	87045953	-	1	NA	NA	NA	28284	NM_025638	66569	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	0.015000	0.437811	-48(CCGTTTAAAAAC,-,0.00)
mm_54033.1	chr6	12726090	12726290	-	1	NA	NA	NA	23063	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding	0.000000	0.417910	
mm_19643.1	chr2	102861515	102861715	-	1	NA	NA	NA	40050	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.020000	0.477612	
mm_52818.1	chr6	121346622	121346822	+	1	NA	NA	NA	25	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.030000	0.557214	
mm_38049.1	chr4	133980471	133980671	-	1	NA	NA	NA	-12580	NM_016957	15331	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	0.010000	0.442786	-71(GCTTTTAGAGAC,+,0.00)
mm_95138.1	chr11	34839318	34839518	+	1	NA	NA	NA	-5777	NM_027411	70385	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0.010000	0.432836	-32(GCATATATAGCT,+,0.00)
mm_100864.1	chr11	5897892	5898092	-	1	NA	NA	NA	790	NM_022879	17898	Mm.46514	NM_022879	ENSMUSG00000020469	Myl7	MLC-2alpha|MLC2a|MYL2A|Mylc2a|RLC-A	myosin, light polypeptide 7, regulatory	protein-coding	0.025000	0.641791	
mm_92789.1	chr10	81303428	81303628	-	1	NA	NA	NA	10565	NM_001146687	18717	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.020000	0.592040	
mm_12189.1	chr2	65553723	65553923	+	1	NA	NA	NA	13669	NM_018732	20269	Mm.330256	NM_018732	ENSMUSG00000057182	Scn3a	Gm1000|Nav1.3	sodium channel, voltage-gated, type III, alpha	protein-coding	0.010000	0.467662	
mm_112462.1	chr13	5867528	5867728	+	1	NA	NA	NA	6139	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.010000	0.417910	
mm_148532.1	chr19	4594222	4594422	+	1	NA	NA	NA	3	NM_008797	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.025000	0.611940	
mm_143856.1	chr17	84185476	84185676	-	1	NA	NA	NA	2371	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.050000	0.412935	
mm_159408.1	chr3	101022276	101022476	-	1	NA	NA	NA	7119	NM_001167906	630146	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0.010000	0.313433	24(TTCTTTATAAAG,-,0.00),26(CTTTATAAAGTT,+,0.00)
mm_3425.1	chr1	146497589	146497789	+	1	NA	NA	NA	2	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.030000	0.497512	
mm_167655.1	chr9	67636017	67636217	+	1	NA	NA	NA	-76414	NM_001081242	70549	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	0.005000	0.393035	-56(CTGCCTAAAAGC,-,0.00)
mm_5210.1	chr1	13588876	13589076	-	1	NA	NA	NA	934	NM_028173	72265	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	0.010000	0.358209	
mm_3615.1	chr1	152399753	152399953	+	1	NA	NA	NA	-14	NM_177756	269132	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0.030000	0.562189	
mm_53808.1	chr6	146888543	146888743	+	1	NA	NA	NA	149	NM_026221	67533	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	0.145000	0.751244	
mm_111498.1	chr12	99376882	99377082	-	1	NA	NA	NA	73092	NM_183186	71375	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.040000	0.567164	
mm_62379.1	chr7	100786258	100786458	+	1	NA	NA	NA	77055	NM_177073	320100	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.005000	0.432836	
mm_80618.1	chr9	88532825	88533025	+	1	NA	NA	NA	-10028	NR_040721	72655	Mm.21798	NR_040721	ENSMUSG00000097195	Snhg5	2810026P18Rik|4933428I09Rik|mU50HG-b	small nucleolar RNA host gene 5	ncRNA	0.010000	0.507463	
mm_133361.1	chr16	84703233	84703433	+	1	NA	NA	NA	-9690	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.170000	0.766169	-36(GGCTATAAAAGG,-,0.00)
mm_93554.1	chr10	116176865	116177065	-	1	NA	NA	NA	-293	NM_001161839	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	0.010000	0.407960	
mm_125801.1	chr15	74904522	74904722	+	1	NA	NA	NA	-22918	NM_025929	67038	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.000000	0.537313	-35(CACTATAAAAGG,-,0.00)
mm_88814.1	chr10	80798515	80798715	+	1	NA	NA	NA	11	NM_023900	78670	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.155000	0.671642	
mm_153666.1	chr19	44395844	44396044	-	1	NA	NA	NA	11765	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.000000	0.452736	
mm_132038.1	chr16	27422846	27423046	+	1	NA	NA	NA	33990	NM_001289436	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.005000	0.427861	
mm_71148.1	chr8	39298360	39298560	+	1	NA	NA	NA	480	NR_044988	621335	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	0.010000	0.492537	
mm_67688.1	chr7	89404124	89404324	-	1	NA	NA	NA	-142	NM_008055	14366	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	0.085000	0.711443	
mm_35891.1	chr4	49546636	49546836	-	1	NA	NA	NA	2810	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.000000	0.412935	
mm_60001.1	chr7	30650325	30650525	+	1	NA	NA	NA	-197	NM_133693	68035	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	0.045000	0.517413	
mm_56087.1	chr6	87335616	87335816	-	1	NA	NA	NA	59	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.040000	0.567164	
mm_94426.1	chr11	6273666	6273866	+	1	NA	NA	NA	1071	NM_134020	103694	Mm.254495	NM_134020	ENSMUSG00000004394	Tmed4	1110014L17Rik|AI326346	transmembrane p24 trafficking protein 4	protein-coding	0.025000	0.517413	
mm_40199.1	chr5	36922906	36923106	+	1	NA	NA	NA	-46127	NR_045505	71054	Mm.444807	NR_045505	ENSMUSG00000087487	Ppp2r2cos	4933401P06Rik	protein phosphatase 2, regulatory subunit B, gamma, opposite strand	ncRNA	0.045000	0.557214	
mm_162039.1	chr19	56830688	56830888	+	1	NA	NA	NA	76	NM_001002241	83561	Mm.247541	NM_031387	ENSMUSG00000025081	Tdrd1	MTR-1	tudor domain containing 1	protein-coding	0.005000	0.363184	-42(GGCTTTATATAG,-,0.00),-40(CTTTATATAGGA,+,0.00)
mm_4803.1	chr1	185252639	185252839	+	1	NA	NA	NA	9764	NR_035529	100316737		NR_035529	ENSMUSG00000105770	Mir664	mir-664|mmu-mir-664	microRNA 664	ncRNA	0.025000	0.462687	
mm_38666.1	chr4	144565097	144565297	-	1	NA	NA	NA	-63	NM_001085542	627085	Mm.457899	NM_001085542	ENSMUSG00000078506	Gm13124	OTTMUSG00000010546	predicted gene 13124	protein-coding	0.005000	0.447761	
mm_152437.1	chr19	10738755	10738955	-	1	NA	NA	NA	119	NM_007650	12507	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	0.015000	0.587065	
mm_139602.1	chr17	57281624	57281824	+	1	NA	NA	NA	2624	NM_001163815	22324	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.000000	0.522388	-27(CCTTTTCTAGAC,+,0.00)
mm_100377.1	chr11	119267952	119268152	+	1	NA	NA	NA	89	NM_008064	14387	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.105000	0.701493	
mm_160694.1	chr10	29362549	29362749	-	1	NA	NA	NA	-207	NM_001110197	68031	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	0.020000	0.373134	
mm_156270.1	chrX	136833279	136833479	+	1	NA	NA	NA	10633	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.010000	0.487562	
mm_100317.1	chr11	117987346	117987546	+	1	NA	NA	NA	589	NM_133757	74451	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.040000	0.467662	-7(GTCCTTTAAAGG,-,0.00),-6(TCCTTTAAAGGA,+,0.00),-6(TCCTTTAAAGGA,-,0.00),-5(CCTTTAAAGGAA,+,0.00)
mm_155799.1	chrX	99003156	99003356	+	1	NA	NA	NA	-39325	NM_199018	236920	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	0.020000	0.616915	
mm_28336.1	chr3	89387218	89387418	-	1	NA	NA	NA	-4546	NR_040403	545539	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	ENSMUSG00000074466|OTTMUSG00000021274	predicted gene 15417	ncRNA	0.015000	0.631841	
mm_123913.1	chr14	73358313	73358513	-	1	NA	NA	NA	26858	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.005000	0.388060	
mm_36179.1	chr4	62208357	62208557	-	1	NA	NA	NA	89	NM_001290351	22696	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0.095000	0.666667	
mm_158959.1	chr1	91321983	91322183	+	1	NA	NA	NA	8	NM_001033292	227357	Mm.318167	NM_001033292	ENSMUSG00000049515	Espnl	Gm556	espin-like	protein-coding	0.030000	0.621891	
mm_144504.1	chr18	24603884	24604084	+	1	NA	NA	NA	23	NM_021448	58523	Mm.25298	NM_021448	ENSMUSG00000024271	Elp2	AU023723|Epl2|StIP1|Statip1	elongator acetyltransferase complex subunit 2	protein-coding	0.085000	0.601990	
mm_141914.1	chr17	34998598	34998798	-	1	NA	NA	NA	2048	NM_033075	110956	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0.015000	0.522388	-23(GCCTTTAGGCCC,+,0.00)
mm_26472.1	chr3	144570302	144570502	+	1	NA	NA	NA	-25	NM_053102	93684	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.080000	0.572139	
mm_90664.1	chr10	128821632	128821832	+	1	NA	NA	NA	-39	NM_025364	66118	Mm.235562	NM_025364	ENSMUSG00000078427	Sarnp	1110005A23Rik|Cip29	SAP domain containing ribonucleoprotein	protein-coding	0.080000	0.582090	29(CTTTTTAGAGAG,+,0.00)
mm_133696.1	chr16	92823746	92823946	+	1	NA	NA	NA	2228	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.000000	0.472637	
mm_166656.1	chr6	87379253	87379453	+	1	NA	NA	NA	5988	NM_025467	66284	Mm.46446	NM_025467	ENSMUSG00000030049	Gkn2	1810036H07Rik|Bricd1b	gastrokine 2	protein-coding	0.005000	0.363184	-56(CCTTTAAGATGG,+,0.00)
mm_171085.1	chr3	123385761	123385961	-	1	NA	NA	NA	129	NM_201638	210529	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	0.075000	0.641791	
mm_21698.1	chr2	164512111	164512311	-	1	NA	NA	NA	14686	NM_133779	78928	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	0.010000	0.467662	
mm_69533.1	chr7	135694280	135694480	-	1	NA	NA	NA	21999	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.457711	
mm_97419.1	chr11	78032192	78032392	+	1	NA	NA	NA	-21	NM_183286	70451	Mm.390342	NM_183286	ENSMUSG00000020834	Dhrs13	2610209N15Rik	dehydrogenase/reductase (SDR family) member 13	protein-coding	0.120000	0.756219	
mm_6533.1	chr1	74892720	74892920	-	1	NA	NA	NA	323	NM_021541	12958	Mm.86656	NM_021541	ENSMUSG00000006546	Cryba2	E130107M19Rik	crystallin, beta A2	protein-coding	0.095000	0.656716	
mm_107952.1	chr12	72441758	72441958	+	1	NA	NA	NA	-8	NM_001142728	78257	Mm.266280	NM_030070	ENSMUSG00000021090	Lrrc9	4921529O18Rik|4930432K16Rik	leucine rich repeat containing 9	protein-coding	0.065000	0.606965	
mm_111992.1	chr12	110695686	110695886	-	1	NA	NA	NA	609	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.070000	0.537313	
mm_60404.1	chr7	44475858	44476058	+	1	NA	NA	NA	5611	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.472637	
mm_115607.1	chr13	11991726	11991926	-	1	NA	NA	NA	115119	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.005000	0.482587	
mm_90492.1	chr10	128033250	128033450	+	1	NA	NA	NA	-1996	NM_013608	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.010000	0.502488	
mm_128953.1	chr15	74778759	74778959	-	1	NA	NA	NA	0	NR_027836	78725	Mm.171357	NM_172433	ENSMUSG00000101026	D730001G18Rik	Ly6g6g	RIKEN cDNA D730001G18 gene	ncRNA	0.005000	0.577114	-35(GGCCTTATAAAG,-,0.00),-33(CCTTATAAAGGC,+,0.00),-33(CCTTATAAAGGC,-,0.00)
mm_31918.1	chr4	85205580	85205780	+	1	NA	NA	NA	224	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.090000	0.686567	
mm_23195.1	chr3	41089922	41090122	+	1	NA	NA	NA	-6976	NM_027558	70804	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0.000000	0.368159	
mm_45202.1	chr5	52566274	52566474	-	1	NA	NA	NA	-68	NM_144945	246316	Mm.44721	NM_144945	ENSMUSG00000039252	Lgi2	mKIAA1916	leucine-rich repeat LGI family, member 2	protein-coding	0.115000	0.766169	
mm_138327.1	chr17	34850410	34850610	+	1	NA	NA	NA	119	NM_001045864	27632	Mm.653	NM_138580	ENSMUSG00000024369	Nelfe	D17H6S45|NELF-E|RD|Rdbp	negative elongation factor complex member E, Rdbp	protein-coding	0.120000	0.711443	
mm_9355.1	chr1	172197658	172197858	-	1	NA	NA	NA	9046	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.000000	0.452736	
mm_98852.1	chr11	97662638	97662838	+	1	NA	NA	NA	-674	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.020000	0.467662	
mm_52109.1	chr6	97892263	97892463	+	1	NA	NA	NA	-37454	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.477612	
mm_141052.1	chr17	25727254	25727454	-	1	NA	NA	NA	61	NM_145409	214901	Mm.102540	NM_145409	ENSMUSG00000019214	Chtf18	6030457M03Rik|CTF18|Chl12	CTF18, chromosome transmission fidelity factor 18	protein-coding	0.075000	0.601990	
mm_56574.1	chr6	106747948	106748148	-	1	NA	NA	NA	989	NM_008370	16192	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	0.000000	0.447761	
mm_34268.1	chr4	141422416	141422616	+	1	NA	NA	NA	1737	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.025000	0.562189	-40(GCTTATATAGCA,+,0.00)
mm_145216.1	chr18	50052901	50053101	+	1	NA	NA	NA	-281	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.015000	0.597015	
mm_110956.1	chr12	76710037	76710237	-	1	NA	NA	NA	410	NM_013675	20741	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0.090000	0.701493	
mm_111945.1	chr12	109053642	109053842	-	1	NA	NA	NA	14475	NM_001163175	380785	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0.145000	0.781095	
mm_40168.1	chr5	35814288	35814488	+	1	NA	NA	NA	56508	NM_001177698	231148	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0.045000	0.631841	
mm_113518.1	chr13	37801976	37802176	+	1	NA	NA	NA	-23962	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.005000	0.353234	57(CCTTTTAAAATA,+,0.00)
mm_143934.1	chr17	86161916	86162116	-	1	NA	NA	NA	-5769	NM_011104	18754	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0.040000	0.582090	
mm_140642.1	chr17	12675659	12675859	-	1	NA	NA	NA	79	NM_009202	20517	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.025000	0.547264	
mm_81611.1	chr9	110763586	110763786	+	1	NA	NA	NA	5	NM_010859	17897	Mm.7353	NM_010859	ENSMUSG00000059741	Myl3	MLC1s|MLC1v|Mylc|VLC1	myosin, light polypeptide 3	protein-coding	0.000000	0.512438	-95(GCCCTTTTATGG,-,0.00),-93(CCTTTTATGGCC,+,0.00)
mm_86151.1	chr9	117252595	117252795	-	1	NA	NA	NA	-212	NM_001172126	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.030000	0.582090	
mm_43511.1	chr5	137030580	137030780	+	1	NA	NA	NA	385	NM_001039385	381677	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	0.050000	0.587065	
mm_145603.1	chr18	61061157	61061357	+	1	NA	NA	NA	16107	NM_008809	18596	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.035000	0.572139	
mm_111412.1	chr12	91384284	91384484	-	1	NA	NA	NA	25	NM_181815	75216	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0.085000	0.671642	
mm_114132.1	chr13	55211970	55212170	+	1	NA	NA	NA	2288	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.085000	0.746269	
mm_22591.1	chr3	13525847	13526047	+	1	NA	NA	NA	54292	NM_001163328	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.010000	0.293532	33(AATTATAAAAGG,-,0.00)
mm_97815.1	chr11	82962892	82963092	+	1	NA	NA	NA	-2311	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.000000	0.492537	
mm_92629.1	chr10	80322976	80323176	-	1	NA	NA	NA	-2528	NM_025521	66374	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.105000	0.671642	
mm_13838.1	chr2	119353608	119353808	+	1	NA	NA	NA	2466	NM_026929	69065	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	0.005000	0.487562	
mm_15118.1	chr2	153741186	153741386	+	1	NA	NA	NA	-1	NM_007896	13589	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	0.160000	0.716418	-34(CTCTATAAAAGG,-,0.00)
mm_167434.1	chr8	119418930	119419130	+	1	NA	NA	NA	-18132	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.015000	0.636816	
mm_111630.1	chr12	102439651	102439851	-	1	NA	NA	NA	62	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.070000	0.601990	
mm_115889.1	chr13	22006311	22006511	-	1	NA	NA	NA	3330	NM_019429	54373	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0.030000	0.542289	
mm_52401.1	chr6	113326925	113327125	+	1	NA	NA	NA	49	NM_010957	18294	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0.080000	0.621891	
mm_105519.1	chr11	106272867	106273067	-	1	NA	NA	NA	5	NM_001130187	83796	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	0.085000	0.686567	
mm_15651.1	chr2	163203003	163203203	+	1	NA	NA	NA	-22351	NM_001098799	269389	Mm.207709	NM_001098799	ENSMUSG00000074607	Tox2	AI851523|AV026525|BI987407|Gcx1|RxHMG1	TOX high mobility group box family member 2	protein-coding	0.160000	0.820896	
mm_55324.1	chr6	55678965	55679165	-	1	NA	NA	NA	2198	NM_009717	11922	Mm.5106	NM_009717	ENSMUSG00000037984	Neurod6	Atoh2|Math-2|Math2|Nex|Nex1m|bHLHa2	neurogenic differentiation 6	protein-coding	0.005000	0.552239	
mm_84520.1	chr9	67043727	67043927	-	1	NA	NA	NA	44	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.120000	0.736318	
mm_60394.1	chr7	44475159	44475359	+	1	NA	NA	NA	4912	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.517413	37(CTTTTTATAAAC,+,0.00)
mm_42573.1	chr5	117240383	117240583	+	1	NA	NA	NA	47081	NM_018858	23980	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	0.025000	0.442786	
mm_9859.1	chr1	184811162	184811362	-	1	NA	NA	NA	38	NM_001290273	66112	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	0.045000	0.651741	
mm_157151.1	chrX	9462623	9462823	-	1	NA	NA	NA	6601	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.427861	-29(ACTTTAATAGCA,+,0.00)
mm_152566.1	chr19	11587920	11588120	-	1	NA	NA	NA	16784	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.000000	0.512438	
mm_64296.1	chr7	141861263	141861463	+	1	NA	NA	NA	22291	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.005000	0.522388	
mm_120732.1	chr14	73146416	73146616	+	1	NA	NA	NA	3731	NR_033185	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.005000	0.427861	
mm_24577.1	chr3	93444599	93444799	+	1	NA	NA	NA	2369	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.070000	0.636816	
mm_87428.1	chr10	50803687	50803887	+	1	NA	NA	NA	-91864	NM_011376	20464	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded homolog 1 (Drosophila)	protein-coding	0.005000	0.278607	
mm_56921.1	chr6	119401890	119402090	-	1	NA	NA	NA	15493	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.005000	0.432836	
mm_83811.1	chr9	53591989	53592189	-	1	NA	NA	NA	18261	NM_144784	110446	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	0.015000	0.512438	
mm_152729.1	chr19	18936055	18936255	-	1	NA	NA	NA	64962	NM_146095	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.000000	0.278607	
mm_5329.1	chr1	23877677	23877877	-	1	NA	NA	NA	31959	NR_110972	98366	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	0.010000	0.343284	
mm_132880.1	chr16	48790108	48790308	+	1	NA	NA	NA	-18252	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.015000	0.542289	
mm_146769.1	chr18	20001999	20002199	-	1	NA	NA	NA	-2	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding	0.055000	0.606965	
mm_146573.1	chr18	6983505	6983705	-	1	NA	NA	NA	21174	NM_177595	210719	Mm.257186	NM_177595	ENSMUSG00000061013	Mkx	9430023B20Rik|Irxl1	mohawk homeobox	protein-coding	0.010000	0.228856	
mm_29049.1	chr3	103645936	103646136	-	1	NA	NA	NA	32	NM_174875	666468	Mm.102230	NM_174875	ENSMUSG00000079418	Atg4a	AI627006|AV169859|Apg4a|Atg4al|Autl2	autophagy related 4A, cysteine peptidase	protein-coding	0.010000	0.462687	
mm_140937.1	chr17	24442071	24442271	-	1	NA	NA	NA	930	NM_025718	66705	Mm.29017	NM_025718	ENSMUSG00000024136	Dnase1l2	4733401H14Rik	deoxyribonuclease 1-like 2	protein-coding	0.035000	0.542289	
mm_104549.1	chr11	96777422	96777622	-	1	NA	NA	NA	33	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.100000	0.691542	
mm_134557.1	chr16	20241234	20241434	-	1	NA	NA	NA	24	NM_198599	208158	Mm.326383	NM_198599	ENSMUSG00000041205	Map6d1	A330066I15Rik	MAP6 domain containing 1	protein-coding	0.120000	0.731343	
mm_72122.1	chr8	71689151	71689351	+	1	NA	NA	NA	-1	NM_013564	16336	Mm.476857	NM_013564	ENSMUSG00000079019	Insl3	Rlf|Rlnl	insulin-like 3	protein-coding	0.090000	0.696517	
mm_93848.1	chr10	121807004	121807204	-	1	NA	NA	NA	67167	NM_173022	270802	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	0.025000	0.512438	-59(TACCTTAAAAGG,-,0.00),-57(CCTTAAAAGGGT,+,0.00)
mm_154820.1	chrX	16618470	16618670	+	1	NA	NA	NA	-1128	NM_173740	17161	Mm.21108	NM_173740	ENSMUSG00000025037	Maoa	1110061B18Rik|AA407771	monoamine oxidase A	protein-coding	0.100000	0.681592	
mm_96447.1	chr11	67492228	67492428	+	1	NA	NA	NA	-40670	NM_008088	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.000000	0.358209	
mm_54469.1	chr6	34910355	34910555	-	1	NA	NA	NA	376	NM_001013366	101240	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.040000	0.567164	57(CACTTTAAGAGC,-,0.00),58(ACTTTAAGAGCC,+,0.00)
mm_53183.1	chr6	125432612	125432812	+	1	NA	NA	NA	-52208	NM_198604	213522	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.020000	0.507463	
mm_54229.1	chr6	28213161	28213361	-	1	NA	NA	NA	48340	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.005000	0.442786	
mm_166443.1	chr5	137264248	137264448	+	1	NA	NA	NA	-23906	NM_009599	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.015000	0.472637	
mm_166490.1	chr5	149180134	149180334	+	1	NA	NA	NA	1802	NR_015478	433966	Mm.207047	NR_015478	ENSMUSG00000097191	5730422E09Rik	-	RIKEN cDNA 5730422E09 gene	ncRNA	0.015000	0.393035	37(GACCATTAAAAG,-,0.00),39(CCATTAAAAGAA,+,0.00),58(GTTTAAATAGCA,+,0.00)
mm_48079.1	chr5	136882985	136883185	-	1	NA	NA	NA	22	NM_024474	140709	Mm.295020	NM_024474	ENSMUSG00000004415	Col26a1	9430032K24Rik|BC002218|Col26a|Emid2|Emu2	collagen, type XXVI, alpha 1	protein-coding	0.070000	0.676617	
mm_67533.1	chr7	81345070	81345270	-	1	NA	NA	NA	64	NM_009092	20068	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.105000	0.626866	-90(CGCTTTATAGGC,-,0.00)
mm_48853.1	chr5	149636106	149636306	-	1	NA	NA	NA	109	NM_013559	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.080000	0.626866	
mm_81936.1	chr9	120180192	120180392	+	1	NA	NA	NA	30550	NM_001039364	17433	Mm.486167	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.015000	0.373134	
mm_131114.1	chr16	5306746	5306946	+	1	NA	NA	NA	-50890	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.085000	0.681592	
mm_128176.1	chr15	34443441	34443641	-	1	NA	NA	NA	-265	NM_001163485	19946	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	0.105000	0.701493	
mm_13120.1	chr2	91664039	91664239	+	1	NA	NA	NA	10931	NM_146124	228359	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	0.005000	0.417910	
mm_87928.1	chr10	62598740	62598940	+	1	NA	NA	NA	3458	NM_019553	56200	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0.010000	0.388060	
mm_62594.1	chr7	105642519	105642719	+	1	NA	NA	NA	2079	NM_019502	14356	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0.010000	0.422886	
mm_101132.1	chr11	12428922	12429122	-	1	NA	NA	NA	-16882	NM_001282994	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.010000	0.462687	-59(ATCTTTAAATGC,-,0.00),41(GTCTTTAAGTGG,-,0.00)
mm_8590.1	chr1	156005745	156005945	-	1	NA	NA	NA	28972	NM_001160019	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.005000	0.383085	
mm_86860.1	chr10	21978566	21978766	+	1	NA	NA	NA	-6	NM_001161847	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.030000	0.477612	
mm_25800.1	chr3	127789095	127789295	+	1	NA	NA	NA	-718	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.015000	0.497512	
mm_161348.1	chr14	54625387	54625587	+	1	NA	NA	NA	177	NM_175204	73902	Mm.32009	NM_175204	ENSMUSG00000072423	Psmb11	5830406J20Rik|beta5t	proteasome (prosome, macropain) subunit, beta type, 11	protein-coding	0.045000	0.616915	
mm_67531.1	chr7	81222777	81222977	-	1	NA	NA	NA	9073	NM_008803	18584	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.020000	0.457711	
mm_161086.1	chr12	85350790	85350990	-	1	NA	NA	NA	-11528	NM_145138	217718	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.020000	0.437811	
mm_171536.1	chr4	146909432	146909632	-	1	NA	NA	NA	-112318	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.030000	0.537313	
mm_134661.1	chr16	22162898	22163098	-	1	NA	NA	NA	301	NM_183029	319765	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.120000	0.761194	
mm_114573.1	chr13	75089727	75089927	+	1	NA	NA	NA	-160	NM_013628	18548	Mm.1333	NM_013628	ENSMUSG00000021587	Pcsk1	Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	0.055000	0.547264	
mm_20572.1	chr2	131085494	131085694	-	1	NA	NA	NA	1171	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.030000	0.537313	
mm_146088.1	chr18	73572605	73572805	+	1	NA	NA	NA	0	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.130000	0.696517	
mm_160750.1	chr10	81473190	81473390	-	1	NA	NA	NA	-159	NM_001311127	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.065000	0.686567	
mm_110389.1	chr12	41347999	41348199	-	1	NA	NA	NA	137958	NM_001271708	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.000000	0.517413	
mm_74001.1	chr8	120832853	120833053	+	1	NA	NA	NA	94314	NM_001301811	15900	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.005000	0.572139	-12(CCTTTTATGTCC,+,0.00)
mm_35736.1	chr4	45107999	45108199	-	1	NA	NA	NA	14	NM_001134646	68512	Mm.282081	NM_001099675	ENSMUSG00000078713	Tomm5	1110019J04Rik|Tom5	translocase of outer mitochondrial membrane 5 homolog (yeast)	protein-coding	0.050000	0.592040	
mm_66055.1	chr7	30737861	30738061	-	1	NA	NA	NA	1446	NM_008085	14447	Mm.436562	NM_008085	ENSMUSG00000061099	Gapdhs	Gapd-s|Gapds	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein-coding	0.025000	0.626866	
mm_151714.1	chr19	4625242	4625442	-	1	NA	NA	NA	275	NM_023131	19671	Mm.391143	NM_023131	ENSMUSG00000024889	Rce1	D19Ertd283e|D19Ertd98e	Ras converting CAAX endopeptidase 1	protein-coding	0.100000	0.711443	
mm_87111.1	chr10	33197732	33197932	+	1	NA	NA	NA	58525	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.000000	0.323383	11(CCTTTTATATTA,+,0.00),36(CCTTATAAACTT,+,0.00)
mm_110147.1	chr12	26448629	26448829	-	1	NA	NA	NA	7723	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.005000	0.437811	
mm_114064.1	chr13	54379724	54379924	+	1	NA	NA	NA	8475	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.010000	0.432836	
mm_97054.1	chr11	72607164	72607364	+	1	NA	NA	NA	3	NM_025985	67128	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	0.125000	0.761194	
mm_44141.1	chr5	150197026	150197226	+	1	NA	NA	NA	-62804	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.020000	0.432836	
mm_119918.1	chr14	54953820	54954020	+	1	NA	NA	NA	-4778	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.020000	0.517413	
mm_162094.1	chrX	37557433	37557633	+	1	NA	NA	NA	121	NM_201236	194856	Mm.379498	NM_201236	ENSMUSG00000071770	Rhox4e	Rhox4|Rhox4.5|Rhox4d	reproductive homeobox 4E	protein-coding	0.095000	0.562189	
mm_141789.1	chr17	34309724	34309924	-	1	NA	NA	NA	3957	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.065000	0.636816	
mm_48670.1	chr5	146008935	146009135	-	1	NA	NA	NA	582	NM_019792	56388	Mm.301900	NM_019792	ENSMUSG00000029630	Cyp3a25	AI327008	cytochrome P450, family 3, subfamily a, polypeptide 25	protein-coding	0.000000	0.472637	
mm_120226.1	chr14	62857415	62857615	+	1	NA	NA	NA	-8027	NR_105860	102465311		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.000000	0.393035	75(CCATATATACAC,+,0.00)
mm_32700.1	chr4	116075282	116075482	+	1	NA	NA	NA	113	NM_153521	230654	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	0.080000	0.592040	-44(GGTCCTAAAAGC,-,0.00)
mm_138738.1	chr17	36973589	36973789	+	1	NA	NA	NA	7548	NM_029747	76797	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding	0.020000	0.502488	
mm_29007.1	chr3	101595002	101595202	-	1	NA	NA	NA	9605	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.020000	0.542289	
mm_5258.1	chr1	16656941	16657141	-	1	NA	NA	NA	78	NM_001310470	67923	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	0.075000	0.552239	-32(TCTTAAATGGGC,+,0.00)
mm_71045.1	chr8	33673853	33674053	+	1	NA	NA	NA	20715	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.005000	0.472637	
mm_40801.1	chr5	67642085	67642285	+	1	NA	NA	NA	34302	NM_001033415	330096	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.010000	0.402985	
mm_45296.1	chr5	65091528	65091728	-	1	NA	NA	NA	-15940	NM_001347355	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.015000	0.398010	-62(TTTTTTAAAGTC,+,0.00)
mm_8256.1	chr1	138847524	138847724	-	1	NA	NA	NA	-45	NM_010714	16876	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0.010000	0.497512	62(CTCTCTAAAAAC,-,0.00)
mm_156350.1	chrX	139317604	139317804	+	1	NA	NA	NA	-15979	NM_011635	22037	Mm.1297	NM_011635	ENSMUSG00000051257	Trap1a	Tra-P1A	tumor rejection antigen P1A	protein-coding	0.005000	0.572139	-21(CCCCTTATAAGC,-,0.00),-19(CCTTATAAGCAC,+,0.00)
mm_107851.1	chr12	69374805	69375005	+	1	NA	NA	NA	2755	NM_007481	11845	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.010000	0.353234	
mm_77037.1	chr8	109565749	109565949	-	1	NA	NA	NA	-43	NM_175646	234723	Mm.37667	NM_175646	ENSMUSG00000031723	Txnl4b	AI595343|D530025J19Rik|DLP|Dim2	thioredoxin-like 4B	protein-coding	0.080000	0.567164	
mm_119555.1	chr14	48667552	48667752	+	1	NA	NA	NA	-8	NM_001286481	18424	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	0.030000	0.467662	64(TCTTTAAAACAC,+,0.00)
mm_28555.1	chr3	93411889	93412089	-	1	NA	NA	NA	-16502	NR_039585	100628630		NR_039585	ENSMUSG00000093269	Mir5124a	Mir5124|mmu-mir-5124|mmu-mir-5124a|mu-mir-5124	microRNA 5124a	ncRNA	0.005000	0.492537	
mm_143929.1	chr17	85800322	85800522	-	1	NA	NA	NA	-112168	NM_011380	20472	Mm.5039	NM_011380	ENSMUSG00000024134	Six2	-	sine oculis-related homeobox 2	protein-coding	0.080000	0.691542	
mm_37678.1	chr4	129189482	129189682	-	1	NA	NA	NA	-100	NM_029036	74648	Mm.172064	NM_029036	ENSMUSG00000040928	S100pbp	4930429A08Rik|AI851343|S100pbpr	S100P binding protein	protein-coding	0.095000	0.706468	
mm_62339.1	chr7	100496783	100496983	+	1	NA	NA	NA	3525	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.010000	0.542289	
mm_82468.1	chr9	16186402	16186602	-	1	NA	NA	NA	191729	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.005000	0.393035	
mm_159193.1	chr2	118703753	118703953	-	1	NA	NA	NA	110	NM_001081971	383787	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	0.080000	0.716418	
mm_88169.1	chr10	69764561	69764761	+	1	NA	NA	NA	-160871	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.010000	0.492537	
mm_83207.1	chr9	41985540	41985740	-	1	NA	NA	NA	138649	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.015000	0.452736	
mm_67774.1	chr7	97082863	97083063	-	1	NA	NA	NA	1212	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.010000	0.552239	
mm_34638.1	chr4	150615082	150615282	+	1	NA	NA	NA	36992	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.025000	0.631841	
mm_1302.1	chr1	64690269	64690469	+	1	NA	NA	NA	290	NR_038009	69941	Mm.69044	NR_038009	ENSMUSG00000087213	2810408I11Rik	-	RIKEN cDNA 2810408I11 gene	ncRNA	0.050000	0.487562	
mm_109433.1	chr12	110694081	110694281	+	1	NA	NA	NA	2214	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.010000	0.373134	
mm_64353.1	chr7	142386906	142387106	+	1	NA	NA	NA	864	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.025000	0.626866	
mm_167913.1	chrX	93969113	93969313	+	1	NA	NA	NA	557	NR_028320	385493	Mm.328014	NM_001033480	ENSMUSG00000081044	AU015836	-	expressed sequence AU015836	ncRNA	0.035000	0.492537	
mm_7458.1	chr1	120435645	120435845	-	1	NA	NA	NA	69339	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.005000	0.502488	
mm_118431.1	chr14	8006437	8006637	+	1	NA	NA	NA	3571	NM_001331064	66082	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	0.025000	0.452736	
mm_61819.1	chr7	87584057	87584257	+	1	NA	NA	NA	-11	NM_001081414	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0.010000	0.542289	
mm_120977.1	chr14	78692271	78692471	+	1	NA	NA	NA	32718	NM_001081336	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.000000	0.398010	
mm_134120.1	chr16	10313804	10314004	-	1	NA	NA	NA	64	NM_007929	13731	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	0.110000	0.746269	
mm_25610.1	chr3	117868935	117869135	+	1	NA	NA	NA	-99	NM_029655	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.115000	0.756219	
mm_5596.1	chr1	39558837	39559037	-	1	NA	NA	NA	-10097	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.005000	0.348259	
mm_61957.1	chr7	90208905	90209105	+	1	NA	NA	NA	56427	NM_029256	75338	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.010000	0.273632	
mm_149273.1	chr19	10589014	10589214	+	1	NA	NA	NA	-11728	NR_126092	72982	Mm.391194	NM_028411	ENSMUSG00000024666	Tmem138	1700113I01Rik|2900055D14Rik	transmembrane protein 138	protein-coding	0.020000	0.532338	
mm_46794.1	chr5	112790608	112790808	-	1	NA	NA	NA	-2584	NR_040675	67360	Mm.59218	NR_040675	ENSMUSG00000098230	1700095B10Rik	-	RIKEN cDNA 1700095B10 gene	ncRNA	0.000000	0.517413	
mm_47199.1	chr5	120812423	120812623	-	1	NA	NA	NA	-9	NM_033541	114643	Mm.43230	NM_033541	ENSMUSG00000001166	Oas1c	Oasl2|Oasl5	2'-5' oligoadenylate synthetase 1C	protein-coding	0.045000	0.517413	
mm_38129.1	chr4	134577227	134577427	-	1	NA	NA	NA	-9476	NR_105829	102465216		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.000000	0.532338	
mm_60197.1	chr7	43409157	43409357	+	1	NA	NA	NA	977	NM_172900	243958	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0.010000	0.522388	
mm_101121.1	chr11	12026698	12026898	-	1	NA	NA	NA	1173	NM_001177629	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.060000	0.656716	
mm_61037.1	chr7	49609672	49609872	+	1	NA	NA	NA	27063	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.030000	0.338308	
mm_52013.1	chr6	94221857	94222057	+	1	NA	NA	NA	15485	NR_130996	78178	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0.025000	0.472637	-32(CTGTATTAAAGG,-,0.00)
mm_34318.1	chr4	141821260	141821460	+	1	NA	NA	NA	4645	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.010000	0.557214	
mm_59884.1	chr7	30292181	30292381	+	1	NA	NA	NA	528	NM_001081114	76686	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	0.040000	0.641791	
mm_1111.1	chr1	59860279	59860479	+	1	NA	NA	NA	-52627	NM_001037725	72750	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0.005000	0.318408	59(GACTTTAAATGC,-,0.00)
mm_81435.1	chr9	109095441	109095641	+	1	NA	NA	NA	105	NM_172775	235611	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.145000	0.751244	
mm_108769.1	chr12	89765288	89765488	+	1	NA	NA	NA	-47095	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.010000	0.417910	28(TCTTTAAAACCA,+,0.00)
mm_60881.1	chr7	46240863	46241063	+	1	NA	NA	NA	-24	NM_013624	18419	Mm.8020	NM_013624	ENSMUSG00000009487	Otog	4932420K09|Otgn|twt	otogelin	protein-coding	0.010000	0.621891	
mm_128037.1	chr15	25364178	25364378	-	1	NA	NA	NA	49486	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.145000	0.736318	
mm_154787.1	chrX	13071385	13071585	+	1	NA	NA	NA	-13	NM_009481	22284	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	0.085000	0.761194	
mm_138211.1	chr17	34305822	34306022	+	1	NA	NA	NA	55	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.000000	0.517413	
mm_97067.1	chr11	72960192	72960392	+	1	NA	NA	NA	-877	NM_016745	53313	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0.025000	0.537313	
mm_172663.1	chr8	41965794	41965994	-	1	NA	NA	NA	138627	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	0.030000	0.497512	
mm_154939.1	chrX	36112005	36112205	+	1	NA	NA	NA	-3	NM_133990	16164	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	0.135000	0.766169	
mm_153080.1	chr19	32374144	32374344	-	1	NA	NA	NA	14210	NM_144792	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.005000	0.407960	
mm_13905.1	chr2	120484249	120484449	+	1	NA	NA	NA	7440	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.000000	0.447761	
mm_148610.1	chr19	5335548	5335748	+	1	NA	NA	NA	-93	NM_139301	225865	Mm.87321	NM_139301	ENSMUSG00000038498	Catsper1	Catsper|KSper	cation channel, sperm associated 1	protein-coding	0.020000	0.507463	
mm_44678.1	chr5	30014092	30014292	-	1	NA	NA	NA	1078	NM_031168	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.005000	0.358209	
mm_3110.1	chr1	134560069	134560269	+	1	NA	NA	NA	-9	NM_152895	75605	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0.095000	0.666667	
mm_128914.1	chr15	73645608	73645808	-	1	NA	NA	NA	-20964	NM_001033219	106068	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.155000	0.736318	
mm_165289.1	chr2	86867431	86867631	+	1	NA	NA	NA	-15835	NM_146730	258725	Mm.377658	NM_146730	ENSMUSG00000075171	Olfr1095	MOR179-1	olfactory receptor 1095	protein-coding	0.010000	0.323383	
mm_31554.1	chr4	56802248	56802448	+	1	NA	NA	NA	-17	NM_026079	230233	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	0.090000	0.686567	
mm_127575.1	chr15	102280416	102280616	+	1	NA	NA	NA	1060	NM_134100	106073	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0.030000	0.567164	
mm_24546.1	chr3	93319647	93319847	+	1	NA	NA	NA	-2	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.000000	0.457711	-32(CATTATAAAAAG,-,0.00)
mm_119160.1	chr14	31665718	31665918	+	1	NA	NA	NA	24761	NM_025295	26363	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0.005000	0.522388	-32(TCTTTAAAGCCC,+,0.00)
mm_136229.1	chr16	90284224	90284424	-	1	NA	NA	NA	179	NM_178923	224432	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.135000	0.771144	
mm_81385.1	chr9	108953486	108953686	+	1	NA	NA	NA	-159	NM_007738	12836	Mm.6200	NM_007738	ENSMUSG00000025650	Col7a1	AW209154	collagen, type VII, alpha 1	protein-coding	0.065000	0.691542	
mm_30122.1	chr3	141464477	141464677	-	1	NA	NA	NA	-987	NM_009472	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.025000	0.402985	
mm_137909.1	chr17	32109013	32109213	+	1	NA	NA	NA	-17690	NR_027316	435518	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	ENSMUSG00000002791|Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0.015000	0.412935	-33(AGGTATAAAAAG,-,0.00)
mm_53320.1	chr6	129187414	129187614	+	1	NA	NA	NA	6899	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.000000	0.407960	
mm_46615.1	chr5	108122026	108122226	-	1	NA	NA	NA	10465	NM_001347383	73130	Mm.363960	NM_028876	ENSMUSG00000063406	Tmed5	3110020O18Rik|4432412D15Rik	transmembrane p24 trafficking protein 5	protein-coding	0.000000	0.268657	
mm_107019.1	chr12	12765915	12766115	+	1	NA	NA	NA	-96098	NR_136889	102637952	Mm.421393	NR_136889		Gm34637	-	predicted gene, 34637	ncRNA	0.005000	0.517413	
mm_56414.1	chr6	97252231	97252431	-	1	NA	NA	NA	449	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.025000	0.492537	
mm_100194.1	chr11	116752237	116752437	+	1	NA	NA	NA	170	NR_003364	193217	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	0.005000	0.442786	
mm_63540.1	chr7	128004466	128004666	+	1	NA	NA	NA	188	NM_001079932	434246	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	0.055000	0.646766	
mm_51449.1	chr6	80401509	80401709	+	1	NA	NA	NA	381966	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.000000	0.417910	
mm_64549.1	chr7	144417718	144417918	+	1	NA	NA	NA	25615	NR_037302	100499519		NR_037302	ENSMUSG00000093912	Mir3470b	mmu-mir-3470b	microRNA 3470b	ncRNA	0.035000	0.587065	
mm_64440.1	chr7	142653582	142653782	+	1	NA	NA	NA	1314	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.015000	0.547264	
mm_46582.1	chr5	107478674	107478874	-	1	NA	NA	NA	-18971	NM_001007574	231570	Mm.261891	NM_001007574	ENSMUSG00000044060	A830010M20Rik	AI849226|Kiaa1107|mKIAA1107	RIKEN cDNA A830010M20 gene	protein-coding	0.015000	0.467662	26(GACCATTAAAGA,-,0.00)
mm_85870.1	chr9	110887872	110888072	-	1	NA	NA	NA	7650	NM_001146060	235633	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0.005000	0.522388	
mm_127337.1	chr15	100469696	100469896	+	1	NA	NA	NA	762	NM_134093	68614	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	0.065000	0.472637	
mm_99111.1	chr11	100135374	100135574	+	1	NA	NA	NA	475	NM_008469	16665	Mm.440010	NM_008469	ENSMUSG00000054146	Krt15	AI528832|K15|Krt1-15	keratin 15	protein-coding	0.025000	0.537313	
mm_156153.1	chrX	129952925	129953125	+	1	NA	NA	NA	203283	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.000000	0.238806	
mm_120950.1	chr14	76780715	76780915	+	1	NA	NA	NA	103247	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.025000	0.437811	
mm_70770.1	chr8	21970473	21970673	+	1	NA	NA	NA	-23	NM_026459	67929	Mm.60688	NM_026459	ENSMUSG00000017049	Ccdc70	1700112P19Rik	coiled-coil domain containing 70	protein-coding	0.000000	0.333333	72(AAGTATATAAGG,-,0.00)
mm_31389.1	chr4	48043546	48043746	+	1	NA	NA	NA	-1659	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.060000	0.557214	
mm_126783.1	chr15	86195004	86195204	+	1	NA	NA	NA	-8963	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.065000	0.512438	68(AACTTTAAATGG,-,0.00)
mm_25145.1	chr3	102734828	102735028	+	1	NA	NA	NA	158	NM_027533	70747	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	0.135000	0.786070	
mm_33125.1	chr4	124802739	124802939	+	1	NA	NA	NA	290	NM_008636	17764	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	0.030000	0.621891	
mm_35211.1	chr4	19629916	19630116	-	1	NA	NA	NA	54950	NM_025476	66302	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	0.010000	0.407960	-98(GGCTATTAAAAA,-,0.00)
mm_123021.1	chr14	55116451	55116651	-	1	NA	NA	NA	384	NM_177049	319984	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.025000	0.621891	
mm_95703.1	chr11	54438104	54438304	+	1	NA	NA	NA	25	NM_173753	216742	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.120000	0.691542	
mm_82617.1	chr9	21770087	21770287	-	1	NA	NA	NA	-9901	NM_026282	67629	Mm.295642	NM_026282	ENSMUSG00000074476	Spc24	2410030K01Rik|AV109292|Spbc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	0.035000	0.587065	
mm_137946.1	chr17	32877418	32877618	+	1	NA	NA	NA	14085	NM_207245	240066	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0.045000	0.572139	
mm_4834.1	chr1	186587309	186587509	+	1	NA	NA	NA	-28728	NR_131158	320449	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.020000	0.477612	
mm_56929.1	chr6	119481469	119481669	-	1	NA	NA	NA	1901	NM_133940	101358	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.020000	0.378109	
mm_143886.1	chr17	84313586	84313786	-	1	NA	NA	NA	-125739	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.020000	0.482587	
mm_42050.1	chr5	108629734	108629934	+	1	NA	NA	NA	24	NM_028223	72392	Mm.258324	NM_028223	ENSMUSG00000013495	Tmem175	3010001K23Rik|AI504381|mTMEM175	transmembrane protein 175	protein-coding	0.105000	0.666667	
mm_169169.1	chr13	65605092	65605292	+	1	NA	NA	NA	326338	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.015000	0.527363	-37(GTGCATATAAGC,-,0.00)
mm_81617.1	chr9	110769666	110769866	+	1	NA	NA	NA	6085	NM_010859	17897	Mm.7353	NM_010859	ENSMUSG00000059741	Myl3	MLC1s|MLC1v|Mylc|VLC1	myosin, light polypeptide 3	protein-coding	0.000000	0.502488	
mm_86743.1	chr10	19352613	19352813	+	1	NA	NA	NA	-3826	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20|oligo3	oligodendrocyte transcription factor 3	protein-coding	0.040000	0.616915	
mm_98170.1	chr11	87751731	87751931	+	1	NA	NA	NA	-5033	NR_029555	387160		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.005000	0.532338	
mm_54938.1	chr6	48445737	48445937	-	1	NA	NA	NA	-12	NM_001085417	68910	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	0.025000	0.606965	
mm_153606.1	chr19	43940056	43940256	-	1	NA	NA	NA	42	NM_028029	71972	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.155000	0.800995	
mm_141063.1	chr17	25785462	25785662	-	1	NA	NA	NA	24	NM_001271437	68977	Mm.29230	NM_026897	ENSMUSG00000061046	Haghl	1500017E18Rik|2810014I23Rik|C330022E15Rik	hydroxyacylglutathione hydrolase-like	protein-coding	0.080000	0.611940	
mm_16550.1	chr2	181766957	181767157	+	1	NA	NA	NA	28	NM_001171616	17932	Mm.458718	NM_008665	ENSMUSG00000010505	Myt1	Nzf2|Nzf2a|Nzf2b|Nztf2	myelin transcription factor 1	protein-coding	0.030000	0.462687	
mm_143539.1	chr17	74016741	74016941	-	1	NA	NA	NA	31075	NM_053188	94224	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.000000	0.422886	
mm_16554.1	chr2	181837792	181837992	+	1	NA	NA	NA	38	NM_001291211	245867	Mm.491085	NM_153594	ENSMUSG00000027589	Pcmtd2	5330414D10Rik|AI314201	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding	0.085000	0.616915	-73(GCCCCTTTAAGA,-,0.00),-70(CCTTTAAGAGTG,+,0.00)
mm_75556.1	chr8	57778309	57778509	-	1	NA	NA	NA	-125354	NM_144731	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0.020000	0.437811	
mm_160944.1	chr11	95587547	95587747	-	1	NA	NA	NA	51	NM_033217	18053	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	0.105000	0.711443	
mm_113366.1	chr13	32965603	32965803	+	1	NA	NA	NA	190	NM_011454	20708	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	0.025000	0.557214	
mm_78577.1	chr9	36767922	36768122	+	1	NA	NA	NA	-444	NM_008408	16430	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	0.060000	0.472637	
mm_150718.1	chr19	43523625	43523825	+	1	NA	NA	NA	880	NM_010324	14718	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.035000	0.507463	
mm_1714.1	chr1	75236657	75236857	+	1	NA	NA	NA	55	NM_001159885	56812	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.085000	0.701493	
mm_61571.1	chr7	79743079	79743279	+	1	NA	NA	NA	16	NM_001037927	626359	Mm.387216	NM_001037927	ENSMUSG00000039099	Wdr93	EG626359	WD repeat domain 93	protein-coding	0.060000	0.577114	
mm_75450.1	chr8	47675085	47675285	-	1	NA	NA	NA	-26	NM_023503	69260	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.090000	0.661692	
mm_152405.1	chr19	10593081	10593281	-	1	NA	NA	NA	11077	NM_145496	225913	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	0.000000	0.557214	
mm_123489.1	chr14	66077669	66077869	-	1	NA	NA	NA	0	NM_009618	11495	Mm.422850	NM_009618	ENSMUSG00000022039	Adam2	AI323749|Ftnb|Ph30-beta	a disintegrin and metallopeptidase domain 2	protein-coding	0.045000	0.626866	
mm_53519.1	chr6	136488651	136488851	+	1	NA	NA	NA	-30100	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.060000	0.502488	
mm_38744.1	chr4	145270062	145270262	-	1	NA	NA	NA	-23292	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.000000	0.537313	
mm_138257.1	chr17	34590741	34590941	+	1	NA	NA	NA	1035	NM_134116	106512	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.030000	0.636816	
mm_89845.1	chr10	106879863	106880063	+	1	NA	NA	NA	243701	NM_001142804	380660	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding	0.010000	0.417910	
mm_69478.1	chr7	133760054	133760254	-	1	NA	NA	NA	115	NM_001286030	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.040000	0.547264	-98(CCCTTTATAAAG,+,0.00),-98(CCCTTTATAAAG,-,0.00),-96(CTTTATAAAGTC,+,0.00)
mm_27242.1	chr3	36571825	36572025	-	1	NA	NA	NA	71	NM_009828	12428	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	0.135000	0.706468	
mm_104120.1	chr11	86750369	86750569	-	1	NA	NA	NA	7023	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.000000	0.298507	
mm_32178.1	chr4	100776700	100776900	+	1	NA	NA	NA	121	NM_198037	320508	Mm.151962	NM_198037	ENSMUSG00000028532	Cachd1	1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573	cache domain containing 1	protein-coding	0.130000	0.691542	-31(TCTTTTAAACCT,+,0.00)
mm_37364.1	chr4	120814013	120814213	-	1	NA	NA	NA	11628	NM_001277095	18046	Mm.435590	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0.010000	0.427861	-32(GTTTTTAAAGGA,+,0.00)
mm_101028.1	chr11	8579611	8579811	-	1	NA	NA	NA	84824	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.020000	0.537313	
mm_173275.1	chrX	99557164	99557364	+	1	NA	NA	NA	-86529	NM_008853	18744	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger 1, E3 ubiquitin protein ligase	protein-coding	0.015000	0.517413	87(CTGTTTTAAAGA,-,0.00)
mm_49703.1	chr6	34354077	34354277	+	1	NA	NA	NA	13	NM_008012	14187	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0.050000	0.577114	
mm_48574.1	chr5	143329114	143329314	-	1	NA	NA	NA	24	NM_028379	72881	Mm.261606	NM_028379	ENSMUSG00000001844	Zdhhc4	1810021D01Rik|2900029I10Rik	zinc finger, DHHC domain containing 4	protein-coding	0.135000	0.686567	
mm_68168.1	chr7	103812591	103812791	-	1	NA	NA	NA	1232	NM_016956	15130	Mm.288567	NM_016956		Hbb-b2	AI036344|Hbb2|Hbbt2|beta2	hemoglobin, beta adult minor chain	protein-coding	0.010000	0.537313	
mm_8831.1	chr1	162571302	162571502	-	1	NA	NA	NA	574	NM_001347125	53330	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e	vesicle-associated membrane protein 4	protein-coding	0.050000	0.447761	
mm_20137.1	chr2	121412953	121413153	-	1	NA	NA	NA	739	NM_153075	212670	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	0.010000	0.442786	
mm_97875.1	chr11	83191206	83191406	+	1	NA	NA	NA	-24	NM_011409	20557	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	0.025000	0.562189	
mm_89870.1	chr10	108259680	108259880	+	1	NA	NA	NA	-72409	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.010000	0.348259	
mm_812.1	chr1	45857647	45857847	+	1	NA	NA	NA	62246	NM_028599	73674	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0.035000	0.537313	
mm_54107.1	chr6	16898351	16898551	-	1	NA	NA	NA	-10	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.010000	0.402985	
mm_171609.1	chr4	149856177	149856377	+	1	NA	NA	NA	-82010	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.020000	0.412935	
mm_137274.1	chr17	24719950	24720150	+	1	NA	NA	NA	-13	NM_008503	16898	Mm.157452	NM_008503	ENSMUSG00000044533	Rps2	Llrep3|S4	ribosomal protein S2	protein-coding	0.100000	0.621891	
mm_101350.1	chr11	23739367	23739567	-	1	NA	NA	NA	31503	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.010000	0.398010	
mm_72496.1	chr8	83738343	83738543	+	1	NA	NA	NA	2868	NM_001163029	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.015000	0.537313	
mm_16644.1	chr2	6130002	6130202	-	1	NA	NA	NA	83	NM_144883	227545	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0.140000	0.746269	
mm_107266.1	chr12	29528385	29528585	+	1	NA	NA	NA	101	NM_008666	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.030000	0.547264	
mm_120723.1	chr14	73138667	73138867	+	1	NA	NA	NA	-3743	NM_001170694	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.010000	0.482587	
mm_84784.1	chr9	76567008	76567208	-	1	NA	NA	NA	-21304	NM_001045518	208994	Mm.256929	NM_001045518	ENSMUSG00000032358	Fam83b	C530008M07Rik|Gm516	family with sequence similarity 83, member B	protein-coding	0.130000	0.786070	
mm_57382.1	chr6	124814204	124814404	-	1	NA	NA	NA	-8	NM_009415	21991	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.060000	0.601990	
mm_122492.1	chr14	46597062	46597262	-	1	NA	NA	NA	-21311	NR_046459	100873094	Mm.318596	NR_046459		Rubie	-	RNA upstream of Bmp4 expressed in inner ear	ncRNA	0.015000	0.457711	
mm_39632.1	chr5	24451853	24452053	+	1	NA	NA	NA	-224	NM_001256431	213990	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.160000	0.800995	
mm_170022.1	chr17	21474870	21475070	+	1	NA	NA	NA	-14018	NM_013843	24132	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	0.020000	0.537313	-33(TCTTATAAACAG,+,0.00)
mm_81346.1	chr9	108560337	108560537	+	1	NA	NA	NA	-64	NM_011830	23918	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine 5'-phosphate dehydrogenase 2	protein-coding	0.135000	0.656716	
mm_65698.1	chr7	28377050	28377250	-	1	NA	NA	NA	2078	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.015000	0.482587	
mm_91237.1	chr10	22303760	22303960	-	1	NA	NA	NA	-2860	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.015000	0.437811	
mm_158396.1	chrX	136741193	136741393	-	1	NA	NA	NA	59	NM_001168229	56397	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	0.040000	0.547264	
mm_143788.1	chr17	81731421	81731621	-	1	NA	NA	NA	6866	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.373134	
mm_107642.1	chr12	52503943	52504143	+	1	NA	NA	NA	-12034	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0.165000	0.736318	
mm_84012.1	chr9	57645437	57645637	-	1	NA	NA	NA	116	NM_007783	12988	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.125000	0.766169	
mm_130287.1	chr15	97008585	97008785	-	1	NA	NA	NA	47271	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.020000	0.442786	
mm_159564.1	chr4	109235300	109235500	+	1	NA	NA	NA	138	NM_001285897	108802	Mm.318248	NM_001033226	ENSMUSG00000028558	Calr4	4933403L16Rik|AU017583	calreticulin 4	protein-coding	0.010000	0.407960	
mm_73507.1	chr8	107367013	107367213	+	1	NA	NA	NA	36092	NM_008706	18104	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	0.015000	0.447761	
mm_162804.1	chr10	77568574	77568774	-	1	NA	NA	NA	-13093	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.010000	0.552239	-36(CACTATAAAAGG,-,0.00)
mm_143741.1	chr17	81498963	81499163	-	1	NA	NA	NA	239324	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.432836	
mm_162460.1	chr1	128592149	128592349	-	1	NA	NA	NA	50	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.055000	0.512438	
mm_83551.1	chr9	46242390	46242590	-	1	NA	NA	NA	1646	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.030000	0.547264	
mm_100992.1	chr11	8446044	8446244	-	1	NA	NA	NA	218391	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.030000	0.587065	
mm_59217.1	chr7	24593807	24594007	+	1	NA	NA	NA	-6266	NM_001033205	101544	Mm.20117	NM_001033205	ENSMUSG00000066721	Zfp575	AI326876|Znf575	zinc finger protein 575	protein-coding	0.120000	0.741294	-81(CCTTTAAGGCAG,+,0.00)
mm_77190.1	chr8	111910081	111910281	-	1	NA	NA	NA	18	NM_019950	56773	Mm.432506	NM_019950	ENSMUSG00000031952	Chst5	AI173964|GST-4|Gn6st-3|I-GlcNAc-6-ST	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5	protein-coding	0.085000	0.726368	
mm_58221.1	chr6	144209359	144209559	-	1	NA	NA	NA	109	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.015000	0.522388	
mm_35178.1	chr4	15148961	15149161	-	1	NA	NA	NA	70	NM_178617	69352	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	0.085000	0.681592	
mm_135488.1	chr16	46039277	46039477	-	1	NA	NA	NA	-28964	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.000000	0.502488	
mm_157052.1	chrX	8074498	8074698	-	1	NA	NA	NA	162	NM_011514	20937	Mm.9244	NM_011514	ENSMUSG00000039231	Suv39h1	AI852103|AL022883|DXHXS7466e|H3-K9-HMTase 1|KMT1A|mIS6	suppressor of variegation 3-9 homolog 1 (Drosophila)	protein-coding	0.130000	0.646766	44(AAATTTAAAAGG,-,0.00)
mm_57327.1	chr6	124738710	124738910	-	1	NA	NA	NA	-101	NM_001077705	15170	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.025000	0.641791	
mm_148344.1	chr18	84659840	84660040	-	1	NA	NA	NA	-9845	NM_177450	338403	Mm.23278	NM_177450	ENSMUSG00000056162	Cndp1	AI746433|Cn1	carnosine dipeptidase 1 (metallopeptidase M20 family)	protein-coding	0.020000	0.492537	
mm_92575.1	chr10	79916829	79917029	-	1	NA	NA	NA	1	NM_177994	109284	Mm.300416	NM_177994	ENSMUSG00000035781	R3hdm4	AI503502|C030046I01Rik	R3H domain containing 4	protein-coding	0.100000	0.701493	
mm_155176.1	chrX	53607901	53608101	+	1	NA	NA	NA	79	NM_028375	72865	Mm.158897	NM_028375	ENSMUSG00000051851	Cxx1c	2900027G03Rik|Mar8.1|Mart8a	CAAX box 1C	protein-coding	0.050000	0.572139	
mm_13314.1	chr2	102658803	102659003	+	1	NA	NA	NA	220	NM_001077514	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.105000	0.711443	
mm_116354.1	chr13	39899193	39899393	-	1	NA	NA	NA	388718	NM_172143	218165	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	0.005000	0.467662	
mm_76317.1	chr8	84686989	84687189	-	1	NA	NA	NA	773	NM_025788	66830	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	0.055000	0.616915	
mm_28459.1	chr3	90692750	90692950	-	1	NA	NA	NA	2871	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.005000	0.477612	
mm_15845.1	chr2	164769869	164770069	+	1	NA	NA	NA	40	NM_026785	68612	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	0.100000	0.676617	
mm_40851.1	chr5	73480957	73481157	+	1	NA	NA	NA	2	NM_001190734	100737	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.035000	0.552239	
mm_91355.1	chr10	27616933	27617133	-	1	NA	NA	NA	-91	NM_008481	16773	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding	0.000000	0.492537	50(ACCCTTTAAAGG,-,0.00),51(CCCTTTAAAGGC,+,0.00),51(CCCTTTAAAGGC,-,0.00),52(CCTTTAAAGGCC,+,0.00)
mm_105107.1	chr11	100970066	100970266	-	1	NA	NA	NA	451	NM_008986	19285	Mm.21864	NM_008986	ENSMUSG00000004044	Ptrf	2310075E07Rik|AW546441|Cav-p60|Cavin	polymerase I and transcript release factor	protein-coding	0.070000	0.651741	
mm_38764.1	chr4	147904533	147904733	-	1	NA	NA	NA	65	NM_001285923	170731	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0.100000	0.726368	
mm_12027.1	chr2	58160928	58161128	+	1	NA	NA	NA	-906	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.040000	0.412935	
mm_130412.1	chr15	97977780	97977980	-	1	NA	NA	NA	13651	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.060000	0.616915	
mm_41291.1	chr5	90463923	90464123	+	1	NA	NA	NA	3153	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.020000	0.457711	
mm_122950.1	chr14	54966831	54967031	-	1	NA	NA	NA	-324	NM_010856	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.005000	0.532338	
mm_96107.1	chr11	60539627	60539827	+	1	NA	NA	NA	2044	NM_172943	268420	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.005000	0.343284	
mm_65.1	chr1	6634311	6634511	+	1	NA	NA	NA	-95640	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.005000	0.368159	-40(CTTTTTATAGAA,+,0.00)
mm_22211.1	chr2	174275906	174276106	-	1	NA	NA	NA	-8314	NM_019690	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.005000	0.368159	
mm_149317.1	chr19	10839626	10839826	+	1	NA	NA	NA	-2818	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.020000	0.547264	-65(CCCTTAAGAGTG,+,0.00),-31(CCCTTTATACCG,+,0.00)
mm_58779.1	chr7	16061777	16061977	+	1	NA	NA	NA	-9968	NM_001347559	666528	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.120000	0.751244	
mm_110994.1	chr12	77624941	77625141	-	1	NA	NA	NA	214900	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.025000	0.517413	
mm_18076.1	chr2	42652970	42653170	-	1	NA	NA	NA	528	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding	0.070000	0.577114	
mm_2766.1	chr1	130716051	130716251	+	1	NA	NA	NA	-330	NM_008825	18640	Mm.249861	NM_008825	ENSMUSG00000026409	Pfkfb2	4930568D07Rik	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding	0.030000	0.527363	
mm_91206.1	chr10	21161341	21161541	-	1	NA	NA	NA	-457	NM_010848	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.035000	0.472637	
mm_151069.1	chr19	47510915	47511115	+	1	NA	NA	NA	-1967	NR_045322	100503104	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0.035000	0.497512	
mm_89854.1	chr10	107349812	107350012	+	1	NA	NA	NA	77518	NM_001284329	108030	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding	0.000000	0.348259	
mm_55216.1	chr6	52225851	52226051	-	1	NA	NA	NA	1419	NM_010456	15405	Mm.4694	NM_010456	ENSMUSG00000038227	Hoxa9	D6a9|Hox-1.7	homeobox A9	protein-coding	0.085000	0.666667	
mm_73661.1	chr8	111033843	111034043	+	1	NA	NA	NA	101	NM_146217	234734	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	0.065000	0.606965	
mm_44666.1	chr5	29365049	29365249	-	1	NA	NA	NA	13241	NM_020295	56873	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0.010000	0.407960	
mm_17847.1	chr2	34372612	34372812	-	1	NA	NA	NA	-667	NM_016768	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.110000	0.756219	
mm_107792.1	chr12	61716443	61716643	+	1	NA	NA	NA	193376	NM_001310586	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.000000	0.243781	
mm_21486.1	chr2	163087695	163087895	-	1	NA	NA	NA	1806	NM_026630	68236	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	0.025000	0.472637	
mm_4321.1	chr1	171851867	171852067	+	1	NA	NA	NA	12270	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.378109	-30(GCTTTTATAAAA,+,0.00),21(ACTTATAAAGGA,+,0.00)
mm_112325.1	chr12	115446791	115446991	-	1	NA	NA	NA	248903	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.005000	0.472637	
mm_74431.1	chr8	3720561	3720761	-	1	NA	NA	NA	-10	NM_029465	75863	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	0.015000	0.517413	
mm_40874.1	chr5	74093021	74093221	+	1	NA	NA	NA	61	NR_145131	70036	Mm.46547	NR_015531	ENSMUSG00000053656	Dancr	2700023E23Rik	differentiation antagonizing non-protein coding RNA	ncRNA	0.090000	0.691542	
mm_113896.1	chr13	49195624	49195824	+	1	NA	NA	NA	8177	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.030000	0.616915	
mm_18675.1	chr2	71055473	71055673	-	1	NA	NA	NA	33	NM_145524	228019	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.055000	0.681592	
mm_168355.1	chr1	113964011	113964211	-	1	NA	NA	NA	-1721026	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.000000	0.467662	24(TCCTTTATAAAG,-,0.00),26(CTTTATAAAGCA,+,0.00)
mm_124964.1	chr15	16728814	16729014	+	1	NA	NA	NA	-49187	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.020000	0.482587	
mm_100719.1	chr11	3895053	3895253	-	1	NA	NA	NA	-27	NM_026150	67430	Mm.347950	NM_026150	ENSMUSG00000020434	4921536K21Rik	AV043724	RIKEN cDNA 4921536K21 gene	protein-coding	0.070000	0.582090	
mm_73003.1	chr8	93810724	93810924	+	1	NA	NA	NA	-14	NM_010308	14681	Mm.251445	NM_010308	ENSMUSG00000031748	Gnao1	AW050213|Galphao|Gnao|alphaO	guanine nucleotide binding protein, alpha O	protein-coding	0.135000	0.761194	
mm_127003.1	chr15	95790858	95791058	+	1	NA	NA	NA	115	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.095000	0.661692	
mm_171203.1	chr3	54482117	54482317	+	1	NA	NA	NA	121110	NM_015784	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0.000000	0.527363	
mm_172219.1	chr6	65060980	65061180	-	1	NA	NA	NA	17874	NM_001253392	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.010000	0.517413	-33(CACTTTATAAGC,-,0.00),-31(CTTTATAAGCAC,+,0.00)
mm_12414.1	chr2	70561163	70561363	+	1	NA	NA	NA	-866	NM_001312900	14415	Mm.272120	NM_008077	ENSMUSG00000070880	Gad1	EP10|Gad-1	glutamate decarboxylase 1	protein-coding	0.055000	0.527363	-35(GCCTTTTTATGG,-,0.00),-33(CTTTTTATGGTG,+,0.00)
mm_103171.1	chr11	70459624	70459824	-	1	NA	NA	NA	102	NM_001029929	574428	Mm.472771	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.080000	0.631841	
mm_79652.1	chr9	59617193	59617393	+	1	NA	NA	NA	9	NR_038074	67287	Mm.439943	NM_029922	ENSMUSG00000025237	Parp6	1700119G14Rik|2310028P13Rik|3110038K10Rik|ARTD17|C030013N01Rik|PARP-6	poly (ADP-ribose) polymerase family, member 6	protein-coding	0.170000	0.781095	
mm_15732.1	chr2	164236889	164237089	+	1	NA	NA	NA	1352	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.030000	0.402985	-17(TCCTTTATAGGA,+,0.00)
mm_149206.1	chr19	9980590	9980790	+	1	NA	NA	NA	90	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.015000	0.447761	
mm_67196.1	chr7	74013588	74013788	-	1	NA	NA	NA	-6	NM_009181	20450	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0.090000	0.731343	
mm_20556.1	chr2	131072544	131072744	-	1	NA	NA	NA	-8830	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.030000	0.597015	
mm_101254.1	chr11	20831081	20831281	-	1	NA	NA	NA	-73	NM_173752	216551	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.140000	0.771144	-33(GCCTTTAAATGC,+,0.00),-33(GCCTTTAAATGC,-,0.00)
mm_88317.1	chr10	75561174	75561374	+	1	NA	NA	NA	-944	NM_198860	192734	Mm.259320	NM_198860	ENSMUSG00000046807	Lrrc75b	AI646023|Fam211b	leucine rich repeat containing 75B	protein-coding	0.025000	0.601990	
mm_93047.1	chr10	88503818	88504018	-	1	NA	NA	NA	52	NR_027477	212862	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	0.165000	0.860697	
mm_31536.1	chr4	55367946	55368146	+	1	NA	NA	NA	18004	NM_009011	19359	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	0.000000	0.313433	
mm_133726.1	chr16	93777153	93777353	+	1	NA	NA	NA	-54868	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.020000	0.537313	
mm_101280.1	chr11	21569870	21570070	-	1	NA	NA	NA	1964	NM_008618	17449	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	0.000000	0.298507	13(CTTTTTAAAAGG,+,0.00),13(CTTTTTAAAAGG,-,0.00)
mm_134603.1	chr16	20621365	20621565	-	1	NA	NA	NA	-187	NM_028420	73047	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	0.165000	0.796020	
mm_102117.1	chr11	53300237	53300437	-	1	NA	NA	NA	142	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.150000	0.741294	
mm_161242.1	chr13	97066965	97067165	+	1	NA	NA	NA	-222	NM_001146045	320557	Mm.458280	NM_001100458	ENSMUSG00000041817	Fam169a	B230112C05Rik|SLAP75	family with sequence similarity 169, member A	protein-coding	0.015000	0.572139	
mm_134672.1	chr16	22402488	22402688	-	1	NA	NA	NA	36982	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.015000	0.432836	-76(GCACTTAAAAGG,-,0.00)
mm_93979.1	chr10	127341871	127342071	-	1	NA	NA	NA	-392	NM_010296	14632	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	0.045000	0.641791	
mm_6423.1	chr1	73929238	73929438	-	1	NA	NA	NA	-64872	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.030000	0.597015	
mm_117807.1	chr13	97588000	97588200	-	1	NA	NA	NA	28100	NR_046157	328314	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.005000	0.522388	
mm_135517.1	chr16	48772051	48772251	-	1	NA	NA	NA	-195	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.005000	0.353234	
mm_47951.1	chr5	135489163	135489363	-	1	NA	NA	NA	55859	NM_146001	215114	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.120000	0.766169	
mm_140189.1	chr17	83277842	83278042	+	1	NA	NA	NA	62659	NM_134117	106522	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.040000	0.567164	
mm_165949.1	chr4	83465007	83465207	+	1	NA	NA	NA	21341	NM_001290527	101739	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	0.000000	0.338308	
mm_148913.1	chr19	6974990	6975190	+	1	NA	NA	NA	42	NM_008889	18938	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.170000	0.840796	
mm_146833.1	chr18	22811616	22811816	-	1	NA	NA	NA	226947	NM_001161483	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding	0.005000	0.422886	
mm_66939.1	chr7	61888457	61888657	-	1	NA	NA	NA	-10693	NR_029772	723931		NR_029772	ENSMUSG00000065568	Mir344	Mirn344|mir-344-1|mmu-mir-344	microRNA 344	ncRNA	0.005000	0.288557	
mm_110008.1	chr12	16537701	16537901	-	1	NA	NA	NA	51969	NM_015763	14245	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188	lipin 1	protein-coding	0.030000	0.482587	-92(CTTTTTAGACGT,+,0.00),35(GGCTATTTATGC,-,0.00)
mm_159920.1	chr6	53978536	53978736	-	1	NA	NA	NA	37	NM_001289714	71287	Mm.158654	NM_027749	ENSMUSG00000052955	Cpvl	4933436L16Rik|HVLP	carboxypeptidase, vitellogenic-like	protein-coding	0.015000	0.393035	
mm_117793.1	chr13	97190537	97190737	-	1	NA	NA	NA	7720	NM_010422	15212	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.020000	0.447761	
mm_98510.1	chr11	94952239	94952439	+	1	NA	NA	NA	-15254	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.020000	0.597015	
mm_139203.1	chr17	47688865	47689065	+	1	NA	NA	NA	-579	NM_001164729	66119	Mm.89912	NM_025365	ENSMUSG00000033475	Tomm6	1110002E23Rik|AI663970	translocase of outer mitochondrial membrane 6 homolog (yeast)	protein-coding	0.100000	0.761194	
mm_64483.1	chr7	143065841	143066041	+	1	NA	NA	NA	-3427	NM_020285	56844	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.010000	0.557214	
mm_85885.1	chr9	111053529	111053729	-	1	NA	NA	NA	3615	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.000000	0.447761	
mm_137631.1	chr17	28329127	28329327	+	1	NA	NA	NA	756	NM_011287	19896	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.055000	0.666667	-38(GGGTCTTAAAAC,-,0.00)
mm_130370.1	chr15	97814754	97814954	-	1	NA	NA	NA	9	NM_001204281	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.010000	0.606965	
mm_58467.1	chr7	3390106	3390306	+	1	NA	NA	NA	-3836	NM_133190	81905	Mm.357990	NM_133190	ENSMUSG00000053395	Cacng8	-	calcium channel, voltage-dependent, gamma subunit 8	protein-coding	0.035000	0.597015	-87(CTTTTTAAAAAG,+,0.00),-87(CTTTTTAAAAAG,-,0.00),-85(TTTTAAAAAGGC,+,0.00)
mm_98505.1	chr11	94952027	94952227	+	1	NA	NA	NA	-15466	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.005000	0.517413	
mm_141041.1	chr17	25274208	25274408	-	1	NA	NA	NA	2	NM_011665	22196	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|F830028O17Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	0.070000	0.616915	
mm_61350.1	chr7	68288114	68288314	+	1	NA	NA	NA	-11620	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.015000	0.592040	
mm_99826.1	chr11	108920405	108920605	+	1	NA	NA	NA	156	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.085000	0.592040	
mm_36565.1	chr4	87230396	87230596	-	1	NA	NA	NA	44	NM_172426	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	0.140000	0.776119	
mm_164001.1	chr14	65980757	65980957	+	1	NA	NA	NA	12374	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.010000	0.552239	
mm_13611.1	chr2	113405008	113405208	+	1	NA	NA	NA	-35956	NM_001285459	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.010000	0.597015	
mm_163250.1	chr11	108181749	108181949	+	1	NA	NA	NA	162039	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.010000	0.472637	
mm_27821.1	chr3	79076218	79076418	-	1	NA	NA	NA	68569	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.005000	0.402985	
mm_11211.1	chr2	29621348	29621548	+	1	NA	NA	NA	1728	NM_001039086	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.030000	0.497512	
mm_124301.1	chr14	103055990	103056190	-	1	NA	NA	NA	9078	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.015000	0.363184	
mm_94069.1	chr10	128401126	128401326	-	1	NA	NA	NA	-2	NM_001136237	72002	Mm.22983	NM_028051	ENSMUSG00000039878	Slc39a5	1810013D05Rik|2010205A06Rik|Zip5	solute carrier family 39 (metal ion transporter), member 5	protein-coding	0.010000	0.611940	-70(GCCCCTTTAAGG,-,0.00),-68(CCCTTTAAGGTA,+,0.00)
mm_35722.1	chr4	44683814	44684014	-	1	NA	NA	NA	-18886	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0.005000	0.427861	
mm_97817.1	chr11	82963182	82963382	+	1	NA	NA	NA	-2601	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.000000	0.487562	
mm_161056.1	chr12	57563966	57564166	+	1	NA	NA	NA	-49	NM_001312644	70846	Mm.84118	NM_001037743	ENSMUSG00000046782	Ttc6	4921506M07Rik|EG639426|ENSMUSG00000046782|Gm69|Gm9813	tetratricopeptide repeat domain 6	protein-coding	0.025000	0.562189	
mm_3285.1	chr1	136638481	136638681	+	1	NA	NA	NA	13680	NM_001160251	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.015000	0.437811	
mm_34928.1	chr4	155831522	155831722	+	1	NA	NA	NA	353	NM_025338	66077	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	0.110000	0.661692	
mm_12042.1	chr2	58779923	58780123	+	1	NA	NA	NA	24839	NM_029692	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.030000	0.497512	9(CCTTTTCGAGAG,+,0.00)
mm_89380.1	chr10	89443341	89443541	+	1	NA	NA	NA	526	NM_001284344	237436	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0.030000	0.527363	
mm_87388.1	chr10	45067198	45067398	+	1	NA	NA	NA	84	NM_011156	19072	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.155000	0.751244	
mm_48007.1	chr5	136161928	136162128	-	1	NA	NA	NA	8628	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.015000	0.527363	
mm_144682.1	chr18	34762539	34762739	+	1	NA	NA	NA	3733	NM_175104	66306	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	0.040000	0.547264	
mm_136418.1	chr16	93929420	93929620	-	1	NA	NA	NA	47	NM_001165925	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.030000	0.542289	
mm_167231.1	chr8	13435014	13435214	+	1	NA	NA	NA	-345	NM_001143671	272465	Mm.250502	NM_001143671	ENSMUSG00000038457	Tmem255b	Fam70b|Gm687	transmembrane protein 255B	protein-coding	0.025000	0.562189	
mm_104828.1	chr11	99089183	99089383	-	1	NA	NA	NA	23	NM_172564	217169	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	0.030000	0.547264	
mm_94359.1	chr11	4986857	4987057	+	1	NA	NA	NA	133	NM_007454	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.120000	0.701493	
mm_164425.1	chr16	45094145	45094345	+	1	NA	NA	NA	192	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.025000	0.567164	
mm_146212.1	chr18	76944031	76944231	+	1	NA	NA	NA	16	NM_001039202	76987	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	0.110000	0.671642	
mm_116636.1	chr13	48971104	48971304	-	1	NA	NA	NA	3092	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.020000	0.507463	-33(GGTTATAAAAGC,-,0.00)
mm_102596.1	chr11	62205071	62205271	-	1	NA	NA	NA	-43813	NM_007413	11541	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0.000000	0.422886	22(GAGCCTTTAAGG,-,0.00),24(GCCTTTAAGGCC,+,0.00)
mm_161596.1	chr16	36210253	36210453	+	1	NA	NA	NA	-50	NM_001082542	408196	Mm.432544	NM_001082542	ENSMUSG00000094733	Gm5416	EG408196|Stfna1l1	predicted gene 5416	protein-coding	0.010000	0.437811	-29(CCTTTAAAACCC,+,0.00)
mm_67600.1	chr7	83735381	83735581	-	1	NA	NA	NA	9	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.005000	0.552239	
mm_119068.1	chr14	30825572	30825772	+	1	NA	NA	NA	78	NM_028839	69179	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	0.155000	0.751244	
mm_6191.1	chr1	65123215	65123415	-	1	NA	NA	NA	-101	NM_001285882	98303	Mm.348057	NM_175293	ENSMUSG00000044816	D630023F18Rik	AI314969	RIKEN cDNA D630023F18 gene	protein-coding	0.005000	0.422886	
mm_33197.1	chr4	126286668	126286868	+	1	NA	NA	NA	-26	NM_199473	329941	Mm.296327	NM_199473	ENSMUSG00000056174	Col8a2	AI429819	collagen, type VIII, alpha 2	protein-coding	0.140000	0.796020	
mm_79634.1	chr9	59541747	59541947	+	1	NA	NA	NA	2307	NM_010421	15211	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.025000	0.447761	
mm_166781.1	chr6	140601591	140601791	+	1	NA	NA	NA	-20972	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.020000	0.353234	
mm_129296.1	chr15	77306490	77306690	-	1	NA	NA	NA	463	NM_001110827	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.170000	0.815920	
mm_34129.1	chr4	139280373	139280573	+	1	NA	NA	NA	30227	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.030000	0.577114	
mm_69700.1	chr7	140049064	140049264	-	1	NA	NA	NA	-76	NM_001347609	17703	Mm.4816	NM_010836	ENSMUSG00000025469	Msx3	AI323377	msh homeobox 3	protein-coding	0.065000	0.611940	45(CTTTTTATAGGG,+,0.00)
mm_77075.1	chr8	110161266	110161466	-	1	NA	NA	NA	6840	NM_007586	12308	Mm.2755	NM_007586	ENSMUSG00000003657	Calb2	CR	calbindin 2	protein-coding	0.010000	0.378109	
mm_65142.1	chr7	19573719	19573919	-	1	NA	NA	NA	-476	NM_027189	69731	Mm.24540	NM_027189	ENSMUSG00000044709	Gemin7	2400008I04Rik|AI120175|AI461688	gem (nuclear organelle) associated protein 7	protein-coding	0.025000	0.512438	
mm_40904.1	chr5	75180088	75180288	+	1	NA	NA	NA	3357	NR_105992	102465620		NR_105992	ENSMUSG00000099060	Mir7025	Gm27860|mmu-mir-7025	microRNA 7025	ncRNA	0.045000	0.557214	
mm_114393.1	chr13	63273517	63273717	+	1	NA	NA	NA	23530	NR_045794	100504114	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	0.025000	0.303483	
mm_154934.1	chrX	35888734	35888934	+	1	NA	NA	NA	2	NM_001009947	75974	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	0.110000	0.721393	
mm_30927.1	chr4	32768238	32768438	+	1	NA	NA	NA	-31921	NM_175364	108755	Mm.1182	NM_175364	ENSMUSG00000045854	Lyrm2	2610208E05Rik	LYR motif containing 2	protein-coding	0.015000	0.412935	
mm_55920.1	chr6	83831643	83831843	-	1	NA	NA	NA	-2	NM_146169	232164	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	0.120000	0.661692	
mm_29394.1	chr3	108904353	108904553	-	1	NA	NA	NA	7251	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.050000	0.532338	
mm_153579.1	chr19	43388262	43388462	-	1	NA	NA	NA	-7	NM_001081257	545291	Mm.442200	NM_001081257	ENSMUSG00000074852	Hpse2	Gm968|Hpa2	heparanase 2	protein-coding	0.035000	0.537313	
mm_113880.1	chr13	48968802	48969002	+	1	NA	NA	NA	790	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.030000	0.492537	26(CTTTTTCTAGAC,+,0.00)
mm_164987.1	chr19	10952270	10952470	+	1	NA	NA	NA	-3104	NM_023731	108673	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0.010000	0.477612	
mm_126123.1	chr15	78325952	78326152	+	1	NA	NA	NA	62	NM_007780	12983	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.025000	0.587065	
mm_140898.1	chr17	24078763	24078963	-	1	NA	NA	NA	-5378	NM_027008	69259	Mm.28171	NM_027008	ENSMUSG00000016946	Kctd5	2610030N08Rik|mKIAA0176	potassium channel tetramerisation domain containing 5	protein-coding	0.015000	0.457711	
mm_3637.1	chr1	152811329	152811529	+	1	NA	NA	NA	11276	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.005000	0.388060	
mm_106964.1	chr12	8928135	8928335	+	1	NA	NA	NA	6928	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.005000	0.472637	
mm_168910.1	chr12	55230317	55230517	+	1	NA	NA	NA	-61	NM_001100110	100101806	Mm.471968	NM_001100110	ENSMUSG00000079108	Srp54c	E330029E12Rik	signal recognition particle 54C	protein-coding	0.065000	0.597015	
mm_1162.1	chr1	60909054	60909254	+	1	NA	NA	NA	129	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.010000	0.517413	-94(GTCTATATAAAG,-,0.00),-92(CTATATAAAGTC,+,0.00)
mm_53395.1	chr6	129587995	129588195	+	1	NA	NA	NA	-3716	NM_010654	16643	Mm.391515	NM_010654	ENSMUSG00000030165	Klrd1	CD94	killer cell lectin-like receptor, subfamily D, member 1	protein-coding	0.005000	0.427861	
mm_108129.1	chr12	76049592	76049792	+	1	NA	NA	NA	127567	NM_010157	13983	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0.025000	0.368159	
mm_65654.1	chr7	28137003	28137203	-	1	NA	NA	NA	7637	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.567164	
mm_118944.1	chr14	27335945	27336145	+	1	NA	NA	NA	8	NM_001289687	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.080000	0.626866	
mm_69547.1	chr7	135695833	135696033	-	1	NA	NA	NA	20446	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.020000	0.447761	
mm_36057.1	chr4	57359415	57359615	-	1	NA	NA	NA	4777	NR_038179	73349	Mm.393774	NR_038178		1700042G15Rik	-	RIKEN cDNA 1700042G15 gene	ncRNA	0.015000	0.477612	
mm_82133.1	chr9	123529751	123529951	+	1	NA	NA	NA	-31	NM_030692	83493	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.115000	0.741294	
mm_89885.1	chr10	108436594	108436794	+	1	NA	NA	NA	104505	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.020000	0.507463	
mm_117461.1	chr13	75930139	75930339	-	1	NA	NA	NA	13585	NM_028493	73296	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	0.075000	0.626866	
mm_90609.1	chr10	128337690	128337890	+	1	NA	NA	NA	63	NM_026444	12974	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0.090000	0.691542	
mm_62307.1	chr7	100227248	100227448	+	1	NA	NA	NA	-259	NM_027629	70974	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0.095000	0.661692	
mm_147075.1	chr18	35498749	35498949	-	1	NA	NA	NA	76	NM_030749	81500	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	0.090000	0.661692	
mm_61458.1	chr7	75596236	75596436	+	1	NA	NA	NA	140802	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.015000	0.442786	
mm_145925.1	chr18	67132982	67133182	+	1	NA	NA	NA	-478	NM_010307	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.085000	0.621891	
mm_88440.1	chr10	77545931	77546131	+	1	NA	NA	NA	15683	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.020000	0.552239	
mm_28341.1	chr3	89393557	89393757	-	1	NA	NA	NA	-454	NM_009565	22724	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0.040000	0.616915	
mm_142011.1	chr17	35200294	35200494	-	1	NA	NA	NA	1613	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.030000	0.572139	
mm_96224.1	chr11	62511666	62511866	+	1	NA	NA	NA	27495	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.010000	0.577114	
mm_125690.1	chr15	66812139	66812339	+	1	NA	NA	NA	19590	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.000000	0.452736	
mm_131826.1	chr16	22950985	22951185	+	1	NA	NA	NA	13	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.005000	0.393035	
mm_172826.1	chr9	17030214	17030414	+	1	NA	NA	NA	-652083	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.005000	0.447761	
mm_18929.1	chr2	76746313	76746513	-	1	NA	NA	NA	71098	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.015000	0.422886	
mm_3442.1	chr1	150102627	150102827	+	1	NA	NA	NA	2696	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.015000	0.477612	
mm_113914.1	chr13	49504766	49504966	+	1	NA	NA	NA	56	NM_001012324	407800	Mm.386931	NM_001012324	ENSMUSG00000043631	Ecm2	9030618O22Rik|BC065151|tenonectin	extracellular matrix protein 2, female organ and adipocyte specific	protein-coding	0.010000	0.353234	54(GTTTTTAAAGAA,+,0.00)
mm_47718.1	chr5	130002724	130002924	-	1	NA	NA	NA	4	NM_010368	110006	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.065000	0.641791	
mm_154671.1	chrX	7882291	7882491	+	1	NA	NA	NA	-1853	NM_001083937	22232	Mm.214976	NM_078484	ENSMUSG00000031156	Slc35a2	AI327289|Had-1|Had1|Sfc8|UGT|Ugalt	solute carrier family 35 (UDP-galactose transporter), member A2	protein-coding	0.020000	0.587065	
mm_116212.1	chr13	32783840	32784040	-	1	NA	NA	NA	-2161	NM_001166030	238564	Mm.60041	NM_001166030	ENSMUSG00000044951	Mylk4	EG238564	myosin light chain kinase family, member 4	protein-coding	0.015000	0.517413	
mm_101165.1	chr11	16973857	16974057	-	1	NA	NA	NA	22547	NM_176982	319701	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.005000	0.388060	
mm_155743.1	chrX	96166680	96166880	+	1	NA	NA	NA	70735	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.010000	0.477612	
mm_109136.1	chr12	106030614	106030814	+	1	NA	NA	NA	20451	NM_001029843	22367	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0.005000	0.437811	
mm_39781.1	chr5	30159760	30159960	+	1	NA	NA	NA	4607	NM_001289798	231086	Mm.291463	NM_145558	ENSMUSG00000059447	Hadhb	4930479F15Rik|Mtpb|TP-beta	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit	protein-coding	0.020000	0.472637	
mm_136203.1	chr16	89818278	89818478	-	1	NA	NA	NA	-26	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.025000	0.517413	
mm_91953.1	chr10	61099888	61100088	-	1	NA	NA	NA	10657	NM_025273	13180	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.010000	0.492537	
mm_128871.1	chr15	72930103	72930303	-	1	NA	NA	NA	-119879	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.010000	0.467662	
mm_63433.1	chr7	127478891	127479091	+	1	NA	NA	NA	-6230	NM_010183	14123	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.080000	0.671642	-100(TCGTCTTAAAGG,-,0.00),-97(TCTTAAAGGGGC,+,0.00),-62(TCGCCTTAAAGG,-,0.00),-61(CGCCTTAAAGGG,-,0.00),-59(CCTTAAAGGGAC,+,0.00),78(CTGTTTTAAAGA,-,0.00)
mm_99792.1	chr11	107428237	107428437	+	1	NA	NA	NA	42383	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.025000	0.447761	
mm_90023.1	chr10	115388833	115389033	+	1	NA	NA	NA	3974	NM_001033261	216345	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0.005000	0.308458	
mm_34278.1	chr4	141424490	141424690	+	1	NA	NA	NA	3811	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.005000	0.537313	
mm_31711.1	chr4	62634041	62634241	+	1	NA	NA	NA	14469	NM_134257	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.020000	0.616915	
mm_164298.1	chr15	103895939	103896139	-	1	NA	NA	NA	3261	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.010000	0.323383	
mm_114623.1	chr13	76055612	76055812	+	1	NA	NA	NA	1284	NM_175495	238725	Mm.167172	NM_175495	ENSMUSG00000045509	Gpr150	C030001A19Rik|PGR11	G protein-coupled receptor 150	protein-coding	0.080000	0.646766	
mm_123373.1	chr14	63199171	63199371	-	1	NA	NA	NA	-5746	NM_201610	382913	Mm.239490	NM_201610	ENSMUSG00000035121	Neil2	Gm1212|NEH2	nei like 2 (E. coli)	protein-coding	0.010000	0.472637	
mm_90061.1	chr10	116275486	116275686	+	1	NA	NA	NA	-25788	NM_029928	19263	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0.025000	0.462687	
mm_16389.1	chr2	178502051	178502251	+	1	NA	NA	NA	71636	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.015000	0.532338	
mm_99988.1	chr11	114720134	114720334	+	1	NA	NA	NA	-7178	NM_001034878	432611	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728	dynein, axonemal, intermediate chain 2	protein-coding	0.005000	0.447761	
mm_88304.1	chr10	75324852	75325052	+	1	NA	NA	NA	94	NM_001331096	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.035000	0.621891	
mm_88120.1	chr10	69219270	69219470	+	1	NA	NA	NA	6176	NM_001252638	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.005000	0.442786	
mm_141434.1	chr17	29492750	29492950	-	1	NA	NA	NA	1805	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.035000	0.522388	
mm_75746.1	chr8	69888108	69888308	-	1	NA	NA	NA	-816	NM_026818	68709	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	0.045000	0.601990	
mm_9457.1	chr1	172894501	172894701	-	1	NA	NA	NA	453	NM_011318	20219	Mm.330510	NM_011318	ENSMUSG00000026542	Apcs	Sap	serum amyloid P-component	protein-coding	0.010000	0.422886	
mm_88863.1	chr10	80930879	80931079	+	1	NA	NA	NA	888	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.050000	0.601990	-95(TCTTATATACAC,+,0.00)
mm_83877.1	chr9	55204895	55205095	-	1	NA	NA	NA	-3940	NM_028049	71999	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	0.010000	0.402985	
mm_86244.1	chr9	121285865	121286065	-	1	NA	NA	NA	-8793	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.025000	0.477612	
mm_43604.1	chr5	137887825	137888025	+	1	NA	NA	NA	-16167	NM_001024932	545812	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.005000	0.537313	
mm_150196.1	chr19	32727204	32727404	+	1	NA	NA	NA	-15006	NM_026487	67979	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.025000	0.512438	
mm_8485.1	chr1	153549747	153549947	-	1	NA	NA	NA	-133	NM_028749	74091	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0.060000	0.611940	
mm_54490.1	chr6	35326039	35326239	-	1	NA	NA	NA	2	NM_173375	208164	Mm.257766	NM_173375	ENSMUSG00000047420	Fam180a	B230314O19	family with sequence similarity 180, member A	protein-coding	0.010000	0.527363	
mm_162370.1	chr1	66935441	66935641	-	1	NA	NA	NA	-175	NM_001113387	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.010000	0.457711	-29(GACCATAAAAGT,-,0.00)
mm_146415.1	chr18	84293128	84293328	+	1	NA	NA	NA	205070	NM_146090	225791	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.020000	0.432836	
mm_38804.1	chr4	148159729	148159929	-	1	NA	NA	NA	-240	NM_001161851	230903	Mm.220327	NM_173401	ENSMUSG00000029001	Fbxo44	5730411K09|AV001623|FBG3|FBX30|Fbx6a|Fbxo6a	F-box protein 44	protein-coding	0.075000	0.661692	
mm_152026.1	chr19	6062034	6062234	-	1	NA	NA	NA	927	NM_013859	29805	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	0.055000	0.621891	
mm_169175.1	chr13	65703682	65703882	-	1	NA	NA	NA	-409671	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.020000	0.532338	
mm_133809.1	chr16	95702005	95702205	+	1	NA	NA	NA	-302	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.055000	0.611940	
mm_23811.1	chr3	79886095	79886295	+	1	NA	NA	NA	265	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.045000	0.557214	
mm_94348.1	chr11	4891108	4891308	+	1	NA	NA	NA	-137	NR_105883	102466764		NR_105883	ENSMUSG00000098296	Mir6918	Gm27968|mmu-mir-6918	microRNA 6918	ncRNA	0.000000	0.308458	
mm_87191.1	chr10	39451205	39451405	+	1	NA	NA	NA	81506	NM_001122893	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.020000	0.497512	
mm_161172.1	chr13	38345432	38345632	+	1	NA	NA	NA	-184	NM_007556	12161	Mm.385759	NM_007556	ENSMUSG00000039004	Bmp6	D13Wsu115e|Vgr1	bone morphogenetic protein 6	protein-coding	0.085000	0.681592	
mm_64462.1	chr7	142665043	142665243	+	1	NA	NA	NA	1673	NM_001315488	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.010000	0.537313	-22(GCTTTTCTGGCC,+,0.00)
mm_86229.1	chr9	120136243	120136443	-	1	NA	NA	NA	5909	NR_002902	104433	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	0.005000	0.567164	
mm_130273.1	chr15	96698732	96698932	-	1	NA	NA	NA	866	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.165000	0.761194	
mm_77092.1	chr8	110793536	110793736	-	1	NA	NA	NA	12288	NM_029646	76527	Mm.77697	NM_029646	ENSMUSG00000031750	Il34	2010004A03Rik|AI593503	interleukin 34	protein-coding	0.035000	0.587065	
mm_109784.1	chr12	3235194	3235394	-	1	NA	NA	NA	-497	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.045000	0.532338	
mm_81998.1	chr9	121642642	121642842	+	1	NA	NA	NA	26	NM_011703	22354	Mm.282007	NM_011703	ENSMUSG00000032528	Vipr1	AV071699|VIP-R1|VPAC1	vasoactive intestinal peptide receptor 1	protein-coding	0.125000	0.756219	
mm_76792.1	chr8	102784979	102785179	-	1	NA	NA	NA	32	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.130000	0.751244	
mm_49274.1	chr6	17635665	17635865	+	1	NA	NA	NA	-1333	NM_007604	12343	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.015000	0.442786	
mm_54500.1	chr6	35510282	35510482	-	1	NA	NA	NA	29506	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.393035	
mm_73206.1	chr8	95678225	95678425	+	1	NA	NA	NA	-24712	NM_001195006	234593	Mm.29846	NM_145602	ENSMUSG00000036564	Ndrg4	D8Bwg1337e|Ndr1-rs|Ndr4|R74996|SMAP-8	N-myc downstream regulated gene 4	protein-coding	0.130000	0.731343	
mm_37109.1	chr4	116639882	116640082	-	1	NA	NA	NA	11692	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.010000	0.532338	35(CACTATAAAGAG,-,0.00)
mm_52797.1	chr6	121300644	121300844	+	1	NA	NA	NA	448	NM_144512	14412	Mm.258596	NM_144512	ENSMUSG00000030108	Slc6a13	GAT3|Gabt3|Gat2	solute carrier family 6 (neurotransmitter transporter, GABA), member 13	protein-coding	0.025000	0.577114	
mm_17296.1	chr2	26294413	26294613	-	1	NA	NA	NA	44	NM_177841	329366	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding	0.000000	0.527363	
mm_121931.1	chr14	23967014	23967214	-	1	NA	NA	NA	37091	NM_001253375	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.020000	0.542289	
mm_27294.1	chr3	45378127	45378327	-	1	NA	NA	NA	33	NR_045172	72511	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.085000	0.636816	
mm_2884.1	chr1	131843899	131844099	+	1	NA	NA	NA	15987	NM_173865	98396	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	0.025000	0.606965	
mm_154731.1	chrX	9490282	9490482	+	1	NA	NA	NA	-21058	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.412935	
mm_73701.1	chr8	111686493	111686693	+	1	NA	NA	NA	3081	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.025000	0.517413	
mm_9981.1	chr1	191232645	191232845	-	1	NA	NA	NA	-49412	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.005000	0.492537	
mm_5180.1	chr1	12990378	12990578	-	1	NA	NA	NA	657	NM_172841	240726	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0.055000	0.562189	-54(GGCCTTATATGG,-,0.00),-52(CCTTATATGGAA,+,0.00)
mm_154942.1	chrX	36195842	36196042	+	1	NA	NA	NA	38	NM_028325	72693	Mm.297698	NM_028325	ENSMUSG00000036699	Zcchc12	2810028A01Rik|AV136720|Sizn1	zinc finger, CCHC domain containing 12	protein-coding	0.045000	0.572139	
mm_10171.1	chr2	4559649	4559849	+	1	NA	NA	NA	-5	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.065000	0.611940	
mm_144567.1	chr18	31777310	31777510	+	1	NA	NA	NA	-11749	NM_027002	69241	Mm.279898	NM_027002	ENSMUSG00000024258	Polr2d	2310002G05Rik|2610028L19Rik|HSRBP4|RBP4	polymerase (RNA) II (DNA directed) polypeptide D	protein-coding	0.020000	0.457711	
mm_64465.1	chr7	142678599	142678799	+	1	NA	NA	NA	1027	NM_001185083	16334	Mm.4946	NM_008387	ENSMUSG00000000215	Ins2	AA986540|Ins-2|InsII|Mody|Mody4	insulin II	protein-coding	0.005000	0.527363	
mm_114066.1	chr13	54380502	54380702	+	1	NA	NA	NA	9253	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.020000	0.597015	
mm_123032.1	chr14	55524853	55525053	-	1	NA	NA	NA	28	NM_001271916	18185	Mm.20422	NM_008736	ENSMUSG00000040632	Nrl	D14H14S46E	neural retina leucine zipper gene	protein-coding	0.035000	0.542289	-77(AGCTCTAAGAGG,-,0.00),-76(GCTCTAAGAGGC,+,0.00)
mm_12928.1	chr2	85039662	85039862	+	1	NA	NA	NA	2311	NM_001136081	20833	Mm.219793	NM_182990	ENSMUSG00000027067	Ssrp1	C81323|Hmg1-rs1|Hmgi-rs3|Hmgox|T160	structure specific recognition protein 1	protein-coding	0.005000	0.437811	
mm_87817.1	chr10	60302087	60302287	+	1	NA	NA	NA	17726	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.010000	0.517413	-76(GGCCTTTAGAGC,-,0.00),-75(GCCTTTAGAGCG,+,0.00)
mm_112867.1	chr13	20849618	20849818	+	1	NA	NA	NA	55605	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.015000	0.452736	
mm_51715.1	chr6	86849201	86849401	+	1	NA	NA	NA	139	NR_028298	67170	Mm.119489	NR_028298	ENSMUSG00000100164	2610306M01Rik	-	RIKEN cDNA 2610306M01 gene	ncRNA	0.055000	0.577114	
mm_40253.1	chr5	38220498	38220698	+	1	NA	NA	NA	116	NM_025281	17089	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	0.120000	0.711443	
mm_8112.1	chr1	135919106	135919306	-	1	NA	NA	NA	1	NM_001313701	18772	Mm.4494	NM_019645	ENSMUSG00000026413	Pkp1	-	plakophilin 1	protein-coding	0.090000	0.716418	
mm_48917.1	chr6	4003995	4004195	+	1	NA	NA	NA	108	NM_025331	66066	Mm.25547	NM_025331	ENSMUSG00000032766	Gng11	0610037B21Rik	guanine nucleotide binding protein (G protein), gamma 11	protein-coding	0.035000	0.651741	
mm_145620.1	chr18	61105947	61106147	+	1	NA	NA	NA	475	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.010000	0.537313	
mm_2301.1	chr1	91538653	91538853	+	1	NA	NA	NA	-1812	NM_001039126	65247	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	0.000000	0.467662	-33(CCCTTTTAAAAA,-,0.00),-32(CCTTTTAAAAAG,+,0.00),-32(CCTTTTAAAAAG,-,0.00)
mm_44329.1	chr5	14692860	14693060	-	1	NA	NA	NA	178042	NM_001110796	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.005000	0.298507	45(GAGTTTTAAAGC,-,0.00)
mm_144310.1	chr18	12599810	12600010	+	1	NA	NA	NA	-43623	NM_028341	72747	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.015000	0.537313	
mm_62959.1	chr7	119739796	119739996	+	1	NA	NA	NA	-19098	NM_145585	233802	Mm.26392	NM_145585	ENSMUSG00000030942	Thumpd1	6330575P11Rik	THUMP domain containing 1	protein-coding	0.055000	0.641791	
mm_55759.1	chr6	78466210	78466410	-	1	NA	NA	NA	2564	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.005000	0.393035	
mm_165658.1	chr3	87512722	87512922	+	1	NA	NA	NA	-12756	NM_001083318	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.015000	0.532338	
mm_161334.1	chr14	50795585	50795785	-	1	NA	NA	NA	43	NM_001111119	239083	Mm.343880	NM_001111119	ENSMUSG00000071470	Ccnb1ip1	Gm288|Hei10|mei4	cyclin B1 interacting protein 1	protein-coding	0.050000	0.542289	
mm_170753.1	chr2	156363147	156363347	-	1	NA	NA	NA	29732	NR_024329	347740	Mm.324242	NR_024329		2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	0.070000	0.552239	-32(CCCTATAAAAAG,-,0.00)
mm_94191.1	chr10	128980846	128981046	-	1	NA	NA	NA	-8968	NM_146861	18373	Mm.377111	NM_146861	ENSMUSG00000069430	Olfr9	MOR269-3	olfactory receptor 9	protein-coding	0.005000	0.487562	
mm_131632.1	chr16	20186475	20186675	+	1	NA	NA	NA	-10341	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.010000	0.502488	
mm_113180.1	chr13	24879768	24879968	+	1	NA	NA	NA	-25732	NR_045182	73326	Mm.458692	NR_045182		4932702P03Rik	1700047I16Rik	RIKEN cDNA 4932702P03 gene	ncRNA	0.025000	0.552239	
mm_159642.1	chr4	143412238	143412438	+	1	NA	NA	NA	-88	NM_172877	242736	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding	0.040000	0.412935	
mm_5834.1	chr1	52817658	52817858	-	1	NA	NA	NA	-70	NM_008384	16329	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	0.075000	0.721393	
mm_126756.1	chr15	85811209	85811409	+	1	NA	NA	NA	388	NM_001164626	72355	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	0.065000	0.567164	
mm_35395.1	chr4	34380983	34381183	-	1	NA	NA	NA	-169532	NM_001007589	433693	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.005000	0.388060	
mm_95513.1	chr11	52004253	52004453	+	1	NA	NA	NA	132	NM_001166653	213084	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	0.115000	0.746269	
mm_173031.1	chrX	105875629	105875829	-	1	NA	NA	NA	53643	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.005000	0.467662	
mm_76772.1	chr8	95853416	95853616	-	1	NA	NA	NA	-25	NM_172758	234595	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	0.040000	0.537313	
mm_55133.1	chr6	51269726	51269926	-	1	NA	NA	NA	84	NR_029719	387166		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.035000	0.562189	
mm_25146.1	chr3	102734867	102735067	+	1	NA	NA	NA	197	NM_027533	70747	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	0.120000	0.741294	
mm_1712.1	chr1	75236522	75236722	+	1	NA	NA	NA	-80	NM_001159885	56812	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.070000	0.691542	
mm_155475.1	chrX	73640667	73640867	+	1	NA	NA	NA	1326	NM_029352	75590	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	0.035000	0.592040	
mm_156835.1	chrX	164373299	164373499	+	1	NA	NA	NA	-123	NM_001308489	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.010000	0.422886	45(CTCCTTATAAAG,-,0.00),47(CCTTATAAAGCA,+,0.00)
mm_125576.1	chr15	59440941	59441141	+	1	NA	NA	NA	66843	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.000000	0.402985	
mm_73360.1	chr8	105593979	105594179	+	1	NA	NA	NA	-11150	NM_001081241	75687	Mm.41261	NM_001081241	ENSMUSG00000038604	Fam65a	2310066E14Rik|AI837433	family with sequence similarity 65, member A	protein-coding	0.040000	0.532338	
mm_160053.1	chr7	3720283	3720483	-	1	NA	NA	NA	-1	NM_011095	18733	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	0.005000	0.572139	
mm_22405.1	chr2	181287883	181288083	-	1	NA	NA	NA	-17	NM_198169	229004	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.165000	0.776119	
mm_47127.1	chr5	120139162	120139362	-	1	NA	NA	NA	1	NR_045793	100503427	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	ENSMUSG00000072671	predicted gene 10390	ncRNA	0.025000	0.572139	
mm_153259.1	chr19	36919006	36919206	-	1	NA	NA	NA	493	NM_028263	72514	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0.095000	0.716418	
mm_13499.1	chr2	107290525	107290725	+	1	NA	NA	NA	36	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding	0.050000	0.646766	
mm_19366.1	chr2	91173089	91173289	-	1	NA	NA	NA	6132	NM_001177720	228355	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0.005000	0.467662	
mm_63764.1	chr7	131146340	131146540	+	1	NA	NA	NA	1	NR_040531	69495	Mm.271181	NR_040531	ENSMUSG00000100759	1700029B22Rik	-	RIKEN cDNA 1700029B22 gene	ncRNA	0.000000	0.497512	
mm_90221.1	chr10	121034049	121034249	+	1	NA	NA	NA	145	NM_011915	24117	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0.060000	0.636816	
mm_75683.1	chr8	68120963	68121163	-	1	NA	NA	NA	-146489	NM_177698	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.020000	0.547264	
mm_147837.1	chr18	62578840	62579040	-	1	NA	NA	NA	17324	NM_001001803	408198	Mm.478742	NM_001001803	ENSMUSG00000060201	Spink7	EG408198|Ecg2	serine peptidase inhibitor, Kazal type 7 (putative)	protein-coding	0.015000	0.497512	
mm_2437.1	chr1	97770084	97770284	+	1	NA	NA	NA	12	NM_026250	252876	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding	0.085000	0.577114	
mm_13997.1	chr2	121955873	121956073	+	1	NA	NA	NA	-28	NM_001290992	329506	Mm.249405	NM_212450	ENSMUSG00000033411	Ctdspl2	D2Ertd485e	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	protein-coding	0.140000	0.741294	
mm_83495.1	chr9	45946461	45946661	-	1	NA	NA	NA	-6971	NR_106055	102465659		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.040000	0.601990	
mm_93976.1	chr10	127336800	127337000	-	1	NA	NA	NA	4679	NM_010296	14632	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	0.020000	0.537313	-34(AGATATAAAAGC,-,0.00)
mm_137685.1	chr17	28858383	28858583	+	1	NA	NA	NA	72	NM_001034885	433091	Mm.328925	NM_001034885	ENSMUSG00000043286	Pnpla1	-	patatin-like phospholipase domain containing 1	protein-coding	0.040000	0.601990	
mm_122228.1	chr14	33125177	33125377	-	1	NA	NA	NA	59789	NM_001146022	545030	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.005000	0.432836	-7(TTTTTTAAAGCA,+,0.00)
mm_102542.1	chr11	61267064	61267264	-	1	NA	NA	NA	22	NM_001331114	11671	Mm.398221	NM_007437	ENSMUSG00000010025	Aldh3a2	AI194803|Ahd-3|Ahd-3r|Ahd3|Ahd3-r|Aldh4|Aldh4-r|FALDH	aldehyde dehydrogenase family 3, subfamily A2	protein-coding	0.055000	0.611940	
mm_92502.1	chr10	78352203	78352403	-	1	NA	NA	NA	-603	NM_053014	28169	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.180000	0.815920	
mm_21106.1	chr2	153345693	153345893	-	1	NA	NA	NA	17	NR_040318	72326	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0.030000	0.512438	
mm_155324.1	chrX	63315159	63315359	+	1	NA	NA	NA	-788248	NR_045442	75545	Mm.391270	NR_045442	ENSMUSG00000085757	1700019B21Rik	-	RIKEN cDNA 1700019B21 gene	ncRNA	0.005000	0.308458	86(CACTTTTAAAGA,-,0.00),87(ACTTTTAAAGAA,+,0.00)
mm_10563.1	chr2	18055087	18055287	+	1	NA	NA	NA	-50	NM_010804	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.035000	0.477612	
mm_93328.1	chr10	99262966	99263166	-	1	NA	NA	NA	-165	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.055000	0.562189	
mm_85964.1	chr9	112140453	112140653	-	1	NA	NA	NA	-21842	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.020000	0.388060	
mm_80497.1	chr9	78503420	78503620	+	1	NA	NA	NA	-21796	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.010000	0.492537	11(GCCCCTAAAAAA,-,0.00)
mm_58815.1	chr7	16401110	16401310	+	1	NA	NA	NA	14	NM_198631	330474	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.105000	0.676617	
mm_42543.1	chr5	115989718	115989918	+	1	NA	NA	NA	34610	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.015000	0.427861	
mm_62208.1	chr7	97842912	97843112	+	1	NA	NA	NA	73	NM_011035	18479	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding	0.055000	0.636816	
mm_6330.1	chr1	71624052	71624252	-	1	NA	NA	NA	29082	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.035000	0.562189	
mm_47702.1	chr5	129878930	129879130	-	1	NA	NA	NA	53	NM_011079	18682	Mm.3159	NM_011079	ENSMUSG00000025537	Phkg1	Phkg	phosphorylase kinase gamma 1	protein-coding	0.010000	0.507463	
mm_34677.1	chr4	150944894	150945094	+	1	NA	NA	NA	16995	NM_001077509	21942	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.025000	0.437811	
mm_38293.1	chr4	136892752	136892952	-	1	NA	NA	NA	62	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.020000	0.557214	
mm_68033.1	chr7	101301590	101301790	-	1	NA	NA	NA	398	NM_001111111	73683	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.040000	0.577114	
mm_116748.1	chr13	51793582	51793782	-	1	NA	NA	NA	65	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.110000	0.751244	
mm_8171.1	chr1	137751506	137751706	-	1	NA	NA	NA	-214849	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.015000	0.462687	
mm_139678.1	chr17	57414934	57415134	+	1	NA	NA	NA	56348	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.393035	
mm_10380.1	chr2	12300714	12300914	+	1	NA	NA	NA	-432	NR_040353	338535	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.015000	0.512438	
mm_56401.1	chr6	97148740	97148940	-	1	NA	NA	NA	43	NM_175313	101351	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	0.120000	0.746269	
mm_122756.1	chr14	54218560	54218760	-	1	NA	NA	NA	35269	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.467662	
mm_33028.1	chr4	122673727	122673927	+	1	NA	NA	NA	-15432	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	0.015000	0.482587	
mm_129516.1	chr15	79062804	79063004	-	1	NA	NA	NA	-45	NM_144849	223690	Mm.24262	NM_144849	ENSMUSG00000033055	Ankrd54	C730048E16Rik|EST1068184|EST475269|Liar	ankyrin repeat domain 54	protein-coding	0.100000	0.671642	
mm_61638.1	chr7	80294376	80294576	+	1	NA	NA	NA	25	NM_001285998	233406	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	0.110000	0.641791	
mm_24742.1	chr3	95287547	95287747	+	1	NA	NA	NA	4712	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.015000	0.517413	
mm_28115.1	chr3	86799061	86799261	-	1	NA	NA	NA	121723	NM_001195496	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.030000	0.552239	
mm_96390.1	chr11	67249729	67249929	+	1	NA	NA	NA	12017	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.005000	0.398010	
mm_158273.1	chrX	111462942	111463142	-	1	NA	NA	NA	74917	NM_025949	67071	Mm.37617	NM_025949	ENSMUSG00000025665	Rps6ka6	2610524K04Rik|RSK4|S6K-alpha-6	ribosomal protein S6 kinase polypeptide 6	protein-coding	0.075000	0.656716	
mm_79836.1	chr9	64805996	64806196	+	1	NA	NA	NA	-4915	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.015000	0.487562	
mm_65803.1	chr7	28962142	28962342	-	1	NA	NA	NA	38	NM_021895	60595	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.125000	0.706468	
mm_44910.1	chr5	35663586	35663786	-	1	NA	NA	NA	16094	NM_001042615	78558	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.000000	0.502488	
mm_38928.1	chr4	150189088	150189288	-	1	NA	NA	NA	11947	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.015000	0.462687	
mm_133881.1	chr16	96499381	96499581	+	1	NA	NA	NA	31875	NM_008791	18546	Mm.5023	NM_008791	ENSMUSG00000090223	Pcp4	P16Rimb19|Pcp-4|Pep19	Purkinje cell protein 4	protein-coding	0.020000	0.462687	
mm_26404.1	chr3	142606643	142606843	+	1	NA	NA	NA	11896	NM_010259	14468	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.005000	0.432836	-27(CTTTATATAGGT,+,0.00),-19(AGGTCTAAAAAG,-,0.00)
mm_90481.1	chr10	127898424	127898624	+	1	NA	NA	NA	-11	NM_027301	70061	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	0.005000	0.522388	
mm_152688.1	chr19	16731355	16731555	-	1	NA	NA	NA	49478	NM_173028	271564	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.005000	0.378109	
mm_112643.1	chr13	16016833	16017033	+	1	NA	NA	NA	5082	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.000000	0.611940	
mm_116820.1	chr13	54589045	54589245	-	1	NA	NA	NA	929	NM_178605	28126	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	0.020000	0.437811	70(ACTTATAAAGCG,+,0.00)
mm_161794.1	chr17	48299959	48300159	+	1	NA	NA	NA	21	NM_001033405	328833	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0.005000	0.522388	
mm_37062.1	chr4	116053737	116053937	-	1	NA	NA	NA	39	NM_028142	72181	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	0.070000	0.601990	
mm_169697.1	chr15	75086326	75086526	+	1	NA	NA	NA	25523	NM_001099217	100041546	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0.005000	0.487562	
mm_61236.1	chr7	64754015	64754215	+	1	NA	NA	NA	118925	NM_023239	66647	Mm.19944	NM_023239	ENSMUSG00000070520	Ndnl2	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Nsmce3|mage-g1	necdin-like 2	protein-coding	0.005000	0.492537	6(TCCTATTTAAAC,-,0.00)
mm_111784.1	chr12	104512558	104512758	-	1	NA	NA	NA	-39422	NM_010351	14836	Mm.129	NM_010351	ENSMUSG00000021095	Gsc	-	goosecoid homeobox	protein-coding	0.015000	0.522388	-37(TGCTATAAAAGA,-,0.00)
mm_64598.1	chr7	3204040	3204240	-	1	NA	NA	NA	-14486	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.000000	0.452736	30(CTCTTTAAAAAA,-,0.00)
mm_166972.1	chr7	44668185	44668385	+	1	NA	NA	NA	2558	NM_001271540	71960	Mm.158289	NM_028021	ENSMUSG00000030739	Myh14	2400004E04Rik|II-C|NHMCII|NMHC II-C	myosin, heavy polypeptide 14	protein-coding	0.030000	0.592040	
mm_88431.1	chr10	77515801	77516001	+	1	NA	NA	NA	-88	NM_133998	108707	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0.130000	0.641791	
mm_96585.1	chr11	69089052	69089252	+	1	NA	NA	NA	624	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.055000	0.631841	
mm_112188.1	chr12	113422557	113422757	-	1	NA	NA	NA	-66908	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.015000	0.547264	
mm_81559.1	chr9	110362352	110362552	+	1	NA	NA	NA	29096	NM_001001144	235623	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0.040000	0.582090	
mm_85065.1	chr9	90828754	90828954	-	1	NA	NA	NA	536945	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.015000	0.487562	
mm_124326.1	chr14	103843047	103843247	-	1	NA	NA	NA	554	NM_007904	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.055000	0.507463	
mm_68954.1	chr7	126564643	126564843	-	1	NA	NA	NA	1623	NM_146200	56347	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.025000	0.467662	
mm_119872.1	chr14	54686152	54686352	+	1	NA	NA	NA	81	NM_021437	58248	Mm.197509	NM_021437	ENSMUSG00000040822	1700123O20Rik	MNCb-2990	RIKEN cDNA 1700123O20 gene	protein-coding	0.090000	0.626866	
mm_88285.1	chr10	75173873	75174073	+	1	NA	NA	NA	-38100	NM_153406	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.030000	0.592040	
mm_79983.1	chr9	66946340	66946540	+	1	NA	NA	NA	364	NM_026467	67941	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	0.070000	0.686567	
mm_61932.1	chr7	90166017	90166217	+	1	NA	NA	NA	35885	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.388060	
mm_168034.1	chrY	90741272	90741472	+	1	NA	NA	NA	13678	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.045000	0.567164	
mm_42638.1	chr5	118560306	118560506	+	1	NA	NA	NA	-313	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.155000	0.815920	
mm_34516.1	chr4	148901206	148901406	+	1	NA	NA	NA	96914	NM_027195	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.080000	0.552239	
mm_165026.1	chr19	32666265	32666465	+	1	NA	NA	NA	45933	NM_026487	67979	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.005000	0.402985	
mm_85361.1	chr9	103217351	103217551	-	1	NA	NA	NA	12835	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.020000	0.487562	
mm_90483.1	chr10	127898453	127898653	+	1	NA	NA	NA	18	NM_027301	70061	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	0.010000	0.542289	
mm_73443.1	chr8	106210867	106211067	+	1	NA	NA	NA	-34	NM_001007567	66432	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	0.135000	0.686567	
mm_14503.1	chr2	132212505	132212705	+	1	NA	NA	NA	35183	NM_027478	70612	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.005000	0.497512	
mm_146110.1	chr18	74240762	74240962	+	1	NA	NA	NA	24650	NM_028868	74322	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.000000	0.437811	
mm_143655.1	chr17	79707552	79707752	-	1	NA	NA	NA	7389	NM_009994	13078	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0.010000	0.398010	
mm_78867.1	chr9	44402390	44402590	+	1	NA	NA	NA	2067	NR_106053	102465658		NR_106053	ENSMUSG00000099309	Mir7085	Gm27423|mmu-mir-7085	microRNA 7085	ncRNA	0.040000	0.527363	
mm_103693.1	chr11	79515673	79515873	-	1	NA	NA	NA	7989	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.005000	0.442786	
mm_158502.1	chrX	142390340	142390540	-	1	NA	NA	NA	95	NM_001033600	50790	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	0.105000	0.676617	81(CCTCTTAAGGCC,+,0.00)
mm_121440.1	chr14	120429960	120430160	+	1	NA	NA	NA	-48401	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.005000	0.248756	-42(CTTTTTAAAAAC,+,0.00)
mm_140799.1	chr17	21650352	21650552	-	1	NA	NA	NA	-159	NM_001166497	73229	Mm.296733	NM_001166497	ENSMUSG00000035868	Zfp983	3110052M02Rik|mszf57|mszf71	zinc finger protein 983	protein-coding	0.015000	0.567164	
mm_35242.1	chr4	19877274	19877474	-	1	NA	NA	NA	45192	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.005000	0.363184	-84(CTTTAAATAGGA,+,0.00)
mm_125843.1	chr15	74958748	74958948	+	1	NA	NA	NA	3742	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.010000	0.552239	-84(CCTTTTAGGTCC,+,0.00)
mm_51236.1	chr6	71493980	71494180	+	1	NA	NA	NA	203	NM_001308303	22644	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	0.140000	0.706468	
mm_125765.1	chr15	74516422	74516622	+	1	NA	NA	NA	326	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0.185000	0.840796	
mm_145426.1	chr18	58659383	58659583	+	1	NA	NA	NA	1	NM_025478	66307	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	0.180000	0.825871	
mm_97528.1	chr11	78503401	78503601	+	1	NA	NA	NA	-12	NM_008759	18292	Mm.134360	NM_008759	ENSMUSG00000001103	Sebox	OG9|Og9x	SEBOX homeobox	protein-coding	0.015000	0.601990	
mm_102205.1	chr11	54779974	54780174	-	1	NA	NA	NA	7629	NM_178626	72729	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.000000	0.333333	
mm_117527.1	chr13	81711192	81711392	-	1	NA	NA	NA	-125	NM_028372	72852	Mm.31095	NM_028372	ENSMUSG00000051098	Mblac2	2900024O10Rik	metallo-beta-lactamase domain containing 2	protein-coding	0.085000	0.681592	
mm_49404.1	chr6	28427796	28427996	+	1	NA	NA	NA	-5	NM_019569	56223	Mm.31708	NM_019569	ENSMUSG00000029707	Fscn3	-	fascin actin-bundling protein 3	protein-coding	0.015000	0.562189	-72(ACCTTTATAGTC,+,0.00)
mm_120070.1	chr14	57057779	57057979	+	1	NA	NA	NA	151	NM_016975	14611	Mm.57207	NM_016975	ENSMUSG00000048582	Gja3	Cnx46|Cx43|Cx46|Gja-3	gap junction protein, alpha 3	protein-coding	0.120000	0.756219	
mm_14078.1	chr2	124610182	124610382	+	1	NA	NA	NA	-14	NM_199238	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.065000	0.582090	-33(GTTTTTAAAAGC,+,0.00),-33(GTTTTTAAAAGC,-,0.00)
mm_10698.1	chr2	22622548	22622748	+	1	NA	NA	NA	321	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.070000	0.616915	
mm_129901.1	chr15	83919296	83919496	-	1	NA	NA	NA	-23	NM_001161629	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	0.030000	0.597015	
mm_13313.1	chr2	102658763	102658963	+	1	NA	NA	NA	180	NM_001077514	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.125000	0.731343	
mm_122106.1	chr14	30921651	30921851	-	1	NA	NA	NA	1836	NM_008407	16426	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	0.020000	0.567164	
mm_58475.1	chr7	3391007	3391207	+	1	NA	NA	NA	-2935	NM_133190	81905	Mm.357990	NM_133190	ENSMUSG00000053395	Cacng8	-	calcium channel, voltage-dependent, gamma subunit 8	protein-coding	0.040000	0.507463	
mm_137542.1	chr17	27556708	27556908	+	1	NA	NA	NA	155	NM_001166477	111241	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1-rs1	ENSMUSG00000041059|Hmgi-rs1	high mobility group AT-hook I, related sequence 1	protein-coding	0.095000	0.631841	
mm_32710.1	chr4	116151320	116151520	+	1	NA	NA	NA	-11	NM_001290658	68273	Mm.196045	NM_026651	ENSMUSG00000028700	Pomgnt1	0610016I07Rik|4930467B06Rik	protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase	protein-coding	0.010000	0.532338	
mm_86577.1	chr10	12963421	12963621	+	1	NA	NA	NA	738	NM_029075	74732	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.030000	0.462687	
mm_41213.1	chr5	88568372	88568572	+	1	NA	NA	NA	3432	NM_001289775	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.010000	0.447761	
mm_103840.1	chr11	83040376	83040576	-	1	NA	NA	NA	57	NR_073524	237887	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	pseudo	0.005000	0.492537	
mm_1949.1	chr1	86350727	86350927	+	1	NA	NA	NA	458	NR_028478	100303740	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	0.020000	0.537313	-83(TCCCATTTAAGG,-,0.00),-81(CCATTTAAGGTG,+,0.00)
mm_48575.1	chr5	143375619	143375819	-	1	NA	NA	NA	5627	NM_001347529	170935	Mm.197460	NM_133355	ENSMUSG00000010825	Grid2ip	-	glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1	protein-coding	0.040000	0.592040	
mm_147122.1	chr18	35740421	35740621	-	1	NA	NA	NA	33	NM_001289592	72512	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0.025000	0.497512	
mm_104151.1	chr11	87086667	87086867	-	1	NA	NA	NA	10	NM_024262	74133	Mm.23257	NM_024262	ENSMUSG00000020495	Smg8	1200011M11Rik	smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.070000	0.636816	
mm_163395.1	chr12	67059174	67059374	+	1	NA	NA	NA	163275	NM_001193266	320772	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	0.020000	0.388060	
mm_7446.1	chr1	120120936	120121136	-	1	NA	NA	NA	60	NM_007830	13167	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	0.080000	0.587065	-13(TGCTTTTAAAGG,-,0.00),-12(GCTTTTAAAGGC,+,0.00),-12(GCTTTTAAAGGC,-,0.00),-11(CTTTTAAAGGCG,+,0.00)
mm_142823.1	chr17	51759448	51759648	-	1	NA	NA	NA	52506	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.015000	0.447761	-79(GTATATAAAAGC,-,0.00)
mm_142040.1	chr17	35266944	35267144	-	1	NA	NA	NA	3921	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.000000	0.552239	
mm_71433.1	chr8	46505579	46505779	+	1	NA	NA	NA	14713	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.030000	0.492537	
mm_1918.1	chr1	86026108	86026308	+	1	NA	NA	NA	4266	NM_027029	70060	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0.025000	0.537313	-64(GCTTAAAGAGGA,+,0.00)
mm_30471.1	chr3	154594171	154594371	-	1	NA	NA	NA	-2440	NM_009968	12972	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	0.015000	0.427861	
mm_153391.1	chr19	40382792	40382992	-	1	NA	NA	NA	19418	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.030000	0.472637	
mm_59326.1	chr7	25316843	25317043	+	1	NA	NA	NA	-221	NM_001160400	269878	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	0.080000	0.711443	
mm_33978.1	chr4	137681591	137681791	+	1	NA	NA	NA	64	NM_001256218	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.120000	0.721393	
mm_59553.1	chr7	28075110	28075310	+	1	NA	NA	NA	3974	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.025000	0.567164	
mm_136695.1	chr17	7138373	7138573	+	1	NA	NA	NA	-31642	NM_011299	20112	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.030000	0.502488	
mm_150796.1	chr19	44303373	44303573	+	1	NA	NA	NA	302	NR_039574	100628619		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.025000	0.487562	
mm_107815.1	chr12	65225429	65225629	+	1	NA	NA	NA	12	NM_027614	70948	Mm.219475	NM_027614	ENSMUSG00000035560	Wdr20rt	4921538B03Rik|4930427E19Rik|Wdr20|Wdr20b	WD repeat domain 20, retrogene	protein-coding	0.010000	0.487562	
mm_167906.1	chrX	78186677	78186877	+	1	NA	NA	NA	-31	NM_001310328	628991		NM_001310328	ENSMUSG00000067679	Obp1b	EG628991|OBP-1b|OBP7	odorant binding protein IB	protein-coding	0.010000	0.432836	-33(CTGTATAAAAAG,-,0.00)
mm_158625.1	chrX	152910051	152910251	-	1	NA	NA	NA	-96318	NM_001137547	635253	Mm.426169	NM_001137547	ENSMUSG00000067215	Usp51	AV136873	ubiquitin specific protease 51	protein-coding	0.070000	0.577114	
mm_167690.1	chr9	86798824	86799024	-	1	NA	NA	NA	55291	NM_178738	244954	Mm.257629	NM_178738	ENSMUSG00000033491	Prss35	6030424L22Rik|P3D9	protease, serine 35	protein-coding	0.020000	0.542289	
mm_155220.1	chrX	57053473	57053673	+	1	NA	NA	NA	3	NM_028242	72459	Mm.2152	NM_028242	ENSMUSG00000067873	Htatsf1	1600023H17Rik|2600017A12Rik|2700077B20Rik|TAT-SF1	HIV TAT specific factor 1	protein-coding	0.145000	0.726368	
mm_84942.1	chr9	82975337	82975537	-	1	NA	NA	NA	52	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.120000	0.716418	
mm_53252.1	chr6	127796327	127796527	+	1	NA	NA	NA	-8284	NR_106092	102466996		NR_106092	ENSMUSG00000104804	Mir7233	mmu-mir-7233	microRNA 7233	ncRNA	0.015000	0.512438	
mm_34177.1	chr4	140699845	140700045	+	1	NA	NA	NA	-1528	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.045000	0.497512	
mm_74185.1	chr8	123631116	123631316	+	1	NA	NA	NA	-22713	NM_133955	69581	Mm.168257	NM_133955	ENSMUSG00000039960	Rhou	2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K	ras homolog family member U	protein-coding	0.030000	0.487562	
mm_11686.1	chr2	35621937	35622137	+	1	NA	NA	NA	56	NM_001114124	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.105000	0.771144	
mm_5044.1	chr1	194619801	194620001	+	1	NA	NA	NA	72	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	0.105000	0.706468	
mm_129244.1	chr15	76659570	76659770	-	1	NA	NA	NA	66	NM_001276333	54151	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0.045000	0.606965	
mm_81797.1	chr9	115216418	115216618	+	1	NA	NA	NA	65552	NR_029430	111186	Mm.484753	NR_029430		Stmn1-rs1	Lag-rs1|Lap18-rs1	stathmin 1, related sequence 1	pseudo	0.035000	0.611940	
mm_38093.1	chr4	134238285	134238485	-	1	NA	NA	NA	14	NM_001081047	194231	Mm.331958	NM_001081047	ENSMUSG00000028841	Cnksr1	BC037758	connector enhancer of kinase suppressor of Ras 1	protein-coding	0.065000	0.706468	
mm_98232.1	chr11	88068456	88068656	+	1	NA	NA	NA	277	NM_016686	22344	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	0.125000	0.796020	
mm_137990.1	chr17	33629481	33629681	+	1	NA	NA	NA	489	NM_026712	328801	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	0.015000	0.492537	
mm_12266.1	chr2	68963169	68963369	+	1	NA	NA	NA	101828	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.015000	0.427861	
mm_146467.1	chr18	87292834	87293034	+	1	NA	NA	NA	580869	NM_172633	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.000000	0.417910	-32(CTCTATATATGC,-,0.00),72(CCTTTTCAGGTG,+,0.00)
mm_44166.1	chr5	150756740	150756940	+	1	NA	NA	NA	83013	NM_001346503	100710	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	0.015000	0.477612	
mm_115549.1	chr13	8871574	8871774	-	1	NA	NA	NA	62	NM_001039388	207615	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.015000	0.422886	
mm_51131.1	chr6	68437784	68437984	+	1	NA	NA	NA	-872185	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.005000	0.477612	
mm_40761.1	chr5	66968467	66968667	+	1	NA	NA	NA	151	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.030000	0.452736	
mm_147792.1	chr18	61652265	61652465	-	1	NA	NA	NA	-3107	NR_029601	387161		NR_029601	ENSMUSG00000065445	Mir143	Mirn143|mir-143|mmu-mir-143	microRNA 143	ncRNA	0.035000	0.577114	
mm_128303.1	chr15	37680398	37680598	-	1	NA	NA	NA	111502	NM_001170866	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.005000	0.462687	
mm_22244.1	chr2	174613952	174614152	-	1	NA	NA	NA	-29482	NM_001099328	100043757	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	ENSMUSG00000050600|OTTMUSG00000017459	zinc finger protein 831	protein-coding	0.040000	0.537313	
mm_68240.1	chr7	105396137	105396337	-	1	NA	NA	NA	3817	NM_001242364	74349	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	0.000000	0.442786	
mm_108106.1	chr12	75308249	75308449	+	1	NA	NA	NA	36	NM_023275	80837	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	0.040000	0.557214	43(CCGTTTAAAAGC,-,0.00)
mm_3026.1	chr1	133664331	133664531	+	1	NA	NA	NA	-3032	NM_144530	70579	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	0.005000	0.482587	
mm_160987.1	chr11	104468753	104468953	-	1	NA	NA	NA	-26562	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.105000	0.736318	
mm_18478.1	chr2	62480395	62480595	-	1	NA	NA	NA	3158	NM_008100	14526	Mm.45494	NM_008100	ENSMUSG00000000394	Gcg	GLP-1|Glu|PPG	glucagon	protein-coding	0.010000	0.467662	
mm_96471.1	chr11	67652456	67652656	+	1	NA	NA	NA	-42770	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.010000	0.557214	
mm_54888.1	chr6	43678878	43679078	-	1	NA	NA	NA	-12700	NM_013861	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.000000	0.388060	
mm_92974.1	chr10	86498747	86498947	-	1	NA	NA	NA	49	NM_001164495	27204	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	0.070000	0.631841	
mm_23809.1	chr3	79885952	79886152	+	1	NA	NA	NA	122	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.035000	0.522388	-29(GAGTTTAAAAGG,-,0.00)
mm_101891.1	chr11	49017268	49017468	-	1	NA	NA	NA	-25122	NM_011579	21822	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	0.015000	0.373134	45(CCCTAGAAAAAG,-,0.00)
mm_122631.1	chr14	51145741	51145941	-	1	NA	NA	NA	926	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.010000	0.532338	
mm_161917.1	chr18	67552632	67552832	-	1	NA	NA	NA	-11	NM_194355	68166	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire homolog 1 (Drosophila)	protein-coding	0.030000	0.487562	
mm_145858.1	chr18	65455886	65456086	+	1	NA	NA	NA	24989	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.487562	
mm_82332.1	chr9	9238895	9239095	-	1	NA	NA	NA	18	NM_027823	71544	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0.130000	0.716418	
mm_168908.1	chr12	55199435	55199635	+	1	NA	NA	NA	-57	NM_001100116	100101807	Mm.439875	NM_001100116	ENSMUSG00000094103	1700047I17Rik2	-	RIKEN cDNA 1700047I17 gene 2	protein-coding	0.125000	0.781095	
mm_147654.1	chr18	60525881	60526081	-	1	NA	NA	NA	-240	NM_026302	67665	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	0.010000	0.537313	
mm_121052.1	chr14	84536451	84536651	+	1	NA	NA	NA	-60127	NR_015539	319903	Mm.440481	NR_015539		9630013A20Rik	-	RIKEN cDNA 9630013A20 gene	ncRNA	0.000000	0.402985	
mm_109869.1	chr12	4910392	4910592	-	1	NA	NA	NA	-2972	NM_145441	217379	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding	0.010000	0.393035	-43(GCCCCTAAAAAG,-,0.00)
mm_107187.1	chr12	25096370	25096570	+	1	NA	NA	NA	-378	NM_010496	15902	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.055000	0.587065	
mm_51151.1	chr6	70698341	70698541	+	1	NA	NA	NA	93734	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.477612	-32(GCTTCTTTAAGG,-,0.00)
mm_28322.1	chr3	89337936	89338136	-	1	NA	NA	NA	-8	NM_007910	13639	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	0.050000	0.641791	
mm_144010.1	chr17	88388465	88388665	-	1	NA	NA	NA	-52147	NM_180974	14236	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.025000	0.537313	
mm_105150.1	chr11	101462621	101462821	-	1	NA	NA	NA	3478	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.005000	0.552239	
mm_78888.1	chr9	44603980	44604180	+	1	NA	NA	NA	-812	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.075000	0.651741	
mm_104208.1	chr11	88118794	88118994	-	1	NA	NA	NA	19748	NM_198013	103841	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	0.005000	0.641791	
mm_103588.1	chr11	78231972	78232172	-	1	NA	NA	NA	13631	NM_009297	20926	Mm.20755	NM_009297	ENSMUSG00000002052	Supt6	5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162	suppressor of Ty 6	protein-coding	0.010000	0.532338	
mm_142880.1	chr17	51826490	51826690	-	1	NA	NA	NA	-2	NM_001163631	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.015000	0.567164	
mm_65095.1	chr7	19271511	19271711	-	1	NA	NA	NA	243	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.090000	0.726368	
mm_45376.1	chr5	66054430	66054630	-	1	NA	NA	NA	43649	NM_139065	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.030000	0.527363	
mm_171742.1	chr4	9669014	9669214	-	1	NA	NA	NA	48	NM_023066	65973	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.110000	0.716418	
mm_94656.1	chr11	17052048	17052248	+	1	NA	NA	NA	214	NM_029861	380686	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	0.065000	0.626866	
mm_92988.1	chr10	86701744	86701944	-	1	NA	NA	NA	3600	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.015000	0.412935	
mm_105796.1	chr11	110079029	110079229	-	1	NA	NA	NA	16808	NM_153145	217258	Mm.344148	NM_153145	ENSMUSG00000041828	Abca8a	-	ATP-binding cassette, sub-family A (ABC1), member 8a	protein-coding	0.010000	0.407960	
mm_123596.1	chr14	67715471	67715671	-	1	NA	NA	NA	39	NM_001110162	108912	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	0.060000	0.587065	
mm_152579.1	chr19	11602117	11602317	-	1	NA	NA	NA	2587	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.000000	0.477612	
mm_90321.1	chr10	127066068	127066268	+	1	NA	NA	NA	2565	NM_009870	12567	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	0.030000	0.597015	
mm_130352.1	chr15	97750670	97750870	-	1	NA	NA	NA	16896	NM_001177810	223864	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.030000	0.626866	
mm_65383.1	chr7	25091113	25091313	-	1	NA	NA	NA	5962	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.010000	0.472637	
mm_80499.1	chr9	78520591	78520791	+	1	NA	NA	NA	-38967	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.030000	0.527363	
mm_142730.1	chr17	48324277	48324477	-	1	NA	NA	NA	8215	NM_177083	320148	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.020000	0.542289	
mm_108429.1	chr12	82245593	82245793	+	1	NA	NA	NA	-65656	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.005000	0.427861	85(GCCCATTAGAGC,-,0.00)
mm_133690.1	chr16	92518965	92519165	+	1	NA	NA	NA	20918	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	0.025000	0.487562	
mm_101435.1	chr11	30100354	30100554	-	1	NA	NA	NA	-74421	NM_146016	237711	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0.015000	0.373134	
mm_113811.1	chr13	46609697	46609897	+	1	NA	NA	NA	-59725	NM_001033192	97863	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	0.055000	0.592040	
mm_88538.1	chr10	78465077	78465277	+	1	NA	NA	NA	-229	NM_172134	216134	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.040000	0.577114	
mm_119557.1	chr14	48670050	48670250	+	1	NA	NA	NA	862	NR_029384	606497	Mm.165199	NR_029384	ENSMUSG00000098682	Otx2os1	-	orthodenticle homeobox 2 opposite strand 1	ncRNA	0.010000	0.437811	-59(GTTTTAAAACCC,+,0.00)
mm_83995.1	chr9	57447622	57447822	-	1	NA	NA	NA	-7608	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.010000	0.532338	
mm_108452.1	chr12	82616479	82616679	+	1	NA	NA	NA	-346	NM_001310478	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0.040000	0.517413	
mm_115325.1	chr13	112463519	112463719	+	1	NA	NA	NA	-451	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.025000	0.522388	
mm_92554.1	chr10	79766811	79767011	-	1	NA	NA	NA	41	NM_144528	70294	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0.195000	0.800995	
mm_157381.1	chrX	37901297	37901497	-	1	NA	NA	NA	373	NM_023894	104384	Mm.156958	NM_023894	ENSMUSG00000068048	Rhox9	1600026O01Rik|Gpbox|Psx2	reproductive homeobox 9	protein-coding	0.030000	0.557214	
mm_137030.1	chr17	17887753	17887953	+	1	NA	NA	NA	29	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.005000	0.388060	
mm_7727.1	chr1	130716855	130717055	-	1	NA	NA	NA	-372	NM_178691	226418	Mm.106553	NM_178691	ENSMUSG00000046404	Yod1	6330564D18Rik|9930028C20Rik|Hshin7	YOD1 deubiquitinase	protein-coding	0.065000	0.577114	
mm_4102.1	chr1	167562733	167562933	+	1	NA	NA	NA	-35529	NM_009107	20183	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0.005000	0.452736	
mm_155746.1	chrX	96166848	96167048	+	1	NA	NA	NA	70903	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.010000	0.482587	
mm_128780.1	chr15	66801488	66801688	-	1	NA	NA	NA	30241	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.010000	0.487562	-59(CCCCTTTTAAGA,-,0.00),-57(CCTTTTAAGAAG,+,0.00)
mm_114010.1	chr13	52607124	52607324	+	1	NA	NA	NA	10342	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.000000	0.452736	
mm_37713.1	chr4	129491031	129491231	-	1	NA	NA	NA	-59	NM_001085491	68233	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0.050000	0.616915	
mm_22984.1	chr3	33011857	33012057	+	1	NA	NA	NA	-12820	NR_040595	73874	Mm.444676	NR_040595	ENSMUSG00000087625	4930419G24Rik	-	RIKEN cDNA 4930419G24 gene	ncRNA	0.025000	0.333333	
mm_121822.1	chr14	20471448	20471648	-	1	NA	NA	NA	8585	NM_001110794	11750	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	0.015000	0.492537	
mm_104831.1	chr11	99141607	99141807	-	1	NA	NA	NA	13370	NM_001301713	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.025000	0.537313	
mm_55902.1	chr6	83656004	83656204	-	1	NA	NA	NA	12	NM_016751	51811	Mm.3115	NM_016751	ENSMUSG00000014542	Clec4f	Clecsf13|D18063|KUCR_MOUSE|Kclr	C-type lectin domain family 4, member f	protein-coding	0.010000	0.537313	
mm_156937.1	chrX	169915975	169916175	+	1	NA	NA	NA	36456	NM_001290505	17318	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	0.020000	0.522388	
mm_109910.1	chr12	8479970	8480170	-	1	NA	NA	NA	19915	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.025000	0.527363	
mm_11795.1	chr2	43555230	43555430	+	1	NA	NA	NA	5	NM_027552	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.000000	0.482587	
mm_92618.1	chr10	80159613	80159813	-	1	NA	NA	NA	-8128	NM_007705	12696	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.040000	0.577114	
mm_138725.1	chr17	36898229	36898429	+	1	NA	NA	NA	199	NM_146077	224762	Mm.213417	NM_146077	ENSMUSG00000058063	Trim31	BC026666|HCG1|HCGI|RNF	tripartite motif-containing 31	protein-coding	0.000000	0.512438	
mm_88030.1	chr10	67254548	67254748	+	1	NA	NA	NA	30633	NM_001036293	641340	Mm.136223	NM_001036293	ENSMUSG00000075000	Nrbf2	NRBF-2	nuclear receptor binding factor 2	protein-coding	0.015000	0.363184	
mm_128274.1	chr15	36794196	36794396	-	1	NA	NA	NA	242	NM_011740	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.090000	0.636816	
mm_162117.1	chrX	56787871	56788071	+	1	NA	NA	NA	1444	NM_001287800	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.010000	0.542289	
mm_117250.1	chr13	64365192	64365392	-	1	NA	NA	NA	5228	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.005000	0.442786	
mm_149241.1	chr19	10193664	10193864	+	1	NA	NA	NA	2389	NR_105959	102465600		NR_105959	ENSMUSG00000098363	Mir6993	Gm27642|mmu-mir-6993	microRNA 6993	ncRNA	0.015000	0.542289	
mm_104204.1	chr11	87998195	87998395	-	1	NA	NA	NA	3	NM_001168471	68097	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	0.010000	0.492537	
mm_88836.1	chr10	80826581	80826781	+	1	NA	NA	NA	-15	NR_027656	100041965	Mm.328806	NR_027656		Oaz1-ps	ENSMUSG00000043801|Gm1823|Gm9786|Oaz-ps	ornithine decarboxylase antizyme 1, pseudogene	pseudo	0.135000	0.671642	-31(GCATATAAAAGT,-,0.00)
mm_9656.1	chr1	177773311	177773511	-	1	NA	NA	NA	23098	NM_007422	11566	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.005000	0.308458	
mm_33302.1	chr4	129010602	129010802	+	1	NA	NA	NA	17478	NM_001033966	11637	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.015000	0.477612	
mm_57552.1	chr6	126849025	126849225	-	1	NA	NA	NA	19	NM_025358	66108	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	0.095000	0.601990	
mm_133039.1	chr16	57391392	57391592	+	1	NA	NA	NA	38215	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.115000	0.686567	
mm_32436.1	chr4	107200710	107200910	+	1	NA	NA	NA	-8370	NM_001081272	546840	Mm.331755	NM_001081272	ENSMUSG00000070877	Ldlrad1	OTTMUSG00000008594	low density lipoprotein receptor class A domain containing 1	protein-coding	0.025000	0.442786	
mm_145740.1	chr18	64265324	64265524	+	1	NA	NA	NA	11065	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.070000	0.631841	
mm_34064.1	chr4	138454296	138454496	+	1	NA	NA	NA	-752	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.065000	0.666667	
mm_171700.1	chr4	71381850	71382050	+	1	NA	NA	NA	818943	NM_011599	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.065000	0.507463	-30(GGTTATAAAAGC,-,0.00)
mm_149582.1	chr19	15923593	15923793	+	1	NA	NA	NA	929	NM_001205339	107272	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0.025000	0.537313	-33(TGCTATAAAGAC,-,0.00)
mm_142601.1	chr17	46763676	46763876	-	1	NA	NA	NA	-64	NM_011195	19208	Mm.215173	NM_011195	ENSMUSG00000036858	Ptcra	gp33|pT-alpha|pT-alpha-TCR|pT[a]|pTa|pTalpha	pre T cell antigen receptor alpha	protein-coding	0.000000	0.631841	
mm_110270.1	chr12	31996830	31997030	-	1	NA	NA	NA	-46395	NM_153198	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.010000	0.447761	
mm_142641.1	chr17	47433319	47433519	-	1	NA	NA	NA	-3220	NM_145489	224833	Mm.218444	NM_145489	ENSMUSG00000034382	AI661453	-	expressed sequence AI661453	protein-coding	0.020000	0.522388	
mm_133387.1	chr16	84773990	84774190	+	1	NA	NA	NA	-33	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.060000	0.676617	
mm_160534.1	chr9	39613618	39613818	+	1	NA	NA	NA	149	NM_146505	258498	Mm.377537	NM_146505	ENSMUSG00000048299	Olfr148	M30|MOR224-4	olfactory receptor 148	protein-coding	0.010000	0.383085	
mm_107788.1	chr12	61603782	61603982	+	1	NA	NA	NA	80715	NM_001310586	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.000000	0.333333	
mm_63507.1	chr7	127841773	127841973	+	1	NA	NA	NA	65	NM_009294	20909	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.045000	0.631841	
mm_48396.1	chr5	140105738	140105938	-	1	NA	NA	NA	197895	NM_175522	243312	Mm.237102	NM_175522	ENSMUSG00000048988	Elfn1	A930017N06Rik|AI197272|Ppp1r28	leucine rich repeat and fibronectin type III, extracellular 1	protein-coding	0.000000	0.482587	-76(CTGTATTAAAGG,-,0.00)
mm_144058.1	chr17	90622292	90622492	-	1	NA	NA	NA	-166512	NM_001346959	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.005000	0.373134	
mm_46305.1	chr5	100562707	100562907	-	1	NA	NA	NA	9398	NM_139198	231507	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.025000	0.502488	
mm_97433.1	chr11	78115483	78115683	+	1	NA	NA	NA	20910	NM_145430	216971	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0.065000	0.676617	
mm_124451.1	chr14	118925235	118925435	-	1	NA	NA	NA	135	NM_025943	66573	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	0.070000	0.676617	
mm_119656.1	chr14	52136369	52136569	+	1	NA	NA	NA	25566	NM_023879	77945	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	0.025000	0.422886	
mm_93510.1	chr10	115184922	115185122	-	1	NA	NA	NA	0	NM_173391	216343	Mm.31597	NM_173391	ENSMUSG00000006764	Tph2	AU043594|Ntph	tryptophan hydroxylase 2	protein-coding	0.025000	0.572139	
mm_93416.1	chr10	108642285	108642485	-	1	NA	NA	NA	57775	NM_203660	368203	Mm.452758	NM_203660		Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding	0.020000	0.472637	
mm_66626.1	chr7	45488748	45488948	-	1	NA	NA	NA	-52	NM_027903	71755	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	0.085000	0.676617	
mm_46455.1	chr5	105117627	105117827	-	1	NA	NA	NA	-7435	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.000000	0.363184	
mm_83981.1	chr9	57295657	57295857	-	1	NA	NA	NA	-33158	NM_028820	74211	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.005000	0.442786	
mm_69310.1	chr7	128418036	128418236	-	1	NA	NA	NA	36	NM_026418	67865	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.150000	0.761194	
mm_23101.1	chr3	37348389	37348589	+	1	NA	NA	NA	-164	NM_008006	14173	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0.040000	0.532338	
mm_61353.1	chr7	68329164	68329364	+	1	NA	NA	NA	-52670	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.015000	0.462687	-53(TTCCTTTTAAGG,-,0.00),-51(CCTTTTAAGGTT,+,0.00)
mm_100515.1	chr11	120530579	120530779	+	1	NA	NA	NA	-48	NM_008101	14527	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.150000	0.771144	
mm_13550.1	chr2	112239690	112239890	+	1	NA	NA	NA	-51	NM_207206	99010	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.170000	0.815920	
mm_90843.1	chr10	8749048	8749248	-	1	NA	NA	NA	136922	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.005000	0.398010	15(CTTTTAATACCC,+,0.00)
mm_141259.1	chr17	27622720	27622920	-	1	NA	NA	NA	144	NM_001291046	56409	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0.085000	0.681592	
mm_109807.1	chr12	3347698	3347898	-	1	NA	NA	NA	-17334	NM_008445	16570	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.000000	0.308458	79(TTTTTTAAAGAC,+,0.00)
mm_55000.1	chr6	48834458	48834658	-	1	NA	NA	NA	6430	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.025000	0.542289	
mm_9216.1	chr1	171231155	171231355	-	1	NA	NA	NA	3094	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.020000	0.562189	
mm_171330.1	chr3	98522221	98522421	-	1	NA	NA	NA	-11754	NM_008294	15495	Mm.14309	NM_008294	ENSMUSG00000095143	Hsd3b4	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	protein-coding	0.035000	0.507463	
mm_131266.1	chr16	10834990	10835190	+	1	NA	NA	NA	31	NM_001162932	223970	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.125000	0.721393	
mm_47332.1	chr5	122500729	122500929	-	1	NA	NA	NA	1396	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.005000	0.318408	
mm_20680.1	chr2	132512399	132512599	-	1	NA	NA	NA	21771	NR_028286	70371	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	0.010000	0.452736	
mm_166722.1	chr6	120466600	120466800	+	1	NA	NA	NA	3503	NM_008359	16172	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.020000	0.487562	
mm_149481.1	chr19	11770282	11770482	+	1	NA	NA	NA	-33	NM_025606	94063	Mm.203928	NM_025606	ENSMUSG00000024683	Mrpl16	2310039D06Rik	mitochondrial ribosomal protein L16	protein-coding	0.045000	0.547264	-38(CTCTATAAAAGG,-,0.00)
mm_149970.1	chr19	29047504	29047704	+	1	NA	NA	NA	121	NR_028360	67329	Mm.394933	NR_028360		1700018L02Rik	-	RIKEN cDNA 1700018L02 gene	ncRNA	0.110000	0.726368	
mm_103425.1	chr11	75599949	75600149	-	1	NA	NA	NA	182	NR_110477	654359	Mm.439961	NR_110477		Gm12338	OTTMUSG00000006216	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.035000	0.427861	
mm_124162.1	chr14	93638264	93638464	-	1	NA	NA	NA	250524	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.303483	
mm_145701.1	chr18	62657168	62657368	+	1	NA	NA	NA	-61004	NM_001001803	408198	Mm.478742	NM_001001803	ENSMUSG00000060201	Spink7	EG408198|Ecg2	serine peptidase inhibitor, Kazal type 7 (putative)	protein-coding	0.005000	0.427861	
mm_136304.1	chr16	91597586	91597786	-	1	NA	NA	NA	-6	NM_030018	77975	Mm.290341	NM_030018	ENSMUSG00000022964	Tmem50b	AU015466|AU019872|B230114J08Rik	transmembrane protein 50B	protein-coding	0.125000	0.741294	
mm_55924.1	chr6	84009993	84010193	-	1	NA	NA	NA	1495	NM_001077694	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.010000	0.557214	
mm_96179.1	chr11	61653149	61653349	+	1	NA	NA	NA	-72	NM_027817	71520	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.010000	0.522388	-96(GGGTTTATGAGC,-,0.00)
mm_125403.1	chr15	41511522	41511722	+	1	NA	NA	NA	64140	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.010000	0.293532	28(TCTTTTAGATCC,+,0.00)
mm_121390.1	chr14	119099357	119099557	+	1	NA	NA	NA	-23	NM_001081252	66435	Mm.213406	NM_025561	ENSMUSG00000042104	Uggt2	1810064L21Rik|3110001A05Rik|3110027P15Rik|A230065J02Rik|AW047562|Ugcgl2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding	0.120000	0.736318	
mm_83817.1	chr9	53648619	53648819	-	1	NA	NA	NA	18788	NM_001161618	75717	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0.005000	0.328358	
mm_54401.1	chr6	31528578	31528778	-	1	NA	NA	NA	35259	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	0.015000	0.522388	
mm_34065.1	chr4	138454627	138454827	+	1	NA	NA	NA	-421	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.120000	0.756219	
mm_82681.1	chr9	22135600	22135800	-	1	NA	NA	NA	46	NM_001102405	11433	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.020000	0.572139	
mm_75568.1	chr8	60515969	60516169	-	1	NA	NA	NA	9945	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.005000	0.442786	
mm_31995.1	chr4	89688097	89688297	+	1	NA	NA	NA	-1	NM_175647	242523	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	0.060000	0.616915	-52(GCTCTTAGACCC,+,0.00)
mm_171182.1	chr3	37108380	37108580	+	1	NA	NA	NA	17474	NM_008366	16183	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	0.015000	0.442786	
mm_123859.1	chr14	72284423	72284623	-	1	NA	NA	NA	425480	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.000000	0.452736	
mm_32606.1	chr4	112034612	112034812	+	1	NA	NA	NA	28443	NM_001102662	639781	Mm.398873	NM_001102662	ENSMUSG00000089773	Skint1	OTTMUSG00000008542|Skint-1	selection and upkeep of intraepithelial T cells 1	protein-coding	0.005000	0.378109	
mm_166901.1	chr7	28442789	28442989	-	1	NA	NA	NA	1952	NM_001039192	63986	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.015000	0.492537	-48(CCTTTTAGGGGG,+,0.00)
mm_169574.1	chr15	22699721	22699921	-	1	NA	NA	NA	15163	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding	0.035000	0.487562	-28(CTTTAAATACCC,+,0.00)
mm_66818.1	chr7	48456146	48456346	-	1	NA	NA	NA	96	NM_205810	233231	Mm.297430	NM_205810	ENSMUSG00000070547	Mrgprb1	MrgB1	MAS-related GPR, member B1	protein-coding	0.010000	0.383085	
mm_31041.1	chr4	41135413	41135613	+	1	NA	NA	NA	-508	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.155000	0.805970	
mm_16255.1	chr2	173216791	173216991	+	1	NA	NA	NA	2031	NM_021394	58203	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.025000	0.567164	
mm_167872.1	chrX	36795624	36795824	+	1	NA	NA	NA	127	NM_007451	11740	Mm.371544	NM_007451	ENSMUSG00000016319	Slc25a5	Ant2	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	protein-coding	0.060000	0.592040	
mm_124330.1	chr14	103843530	103843730	-	1	NA	NA	NA	71	NM_007904	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.050000	0.577114	
mm_155088.1	chrX	48108901	48109101	+	1	NA	NA	NA	276	NM_133213	170745	Mm.129279	NM_133213	ENSMUSG00000037005	Xpnpep2	9030008G12Rik|mAPP	X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	protein-coding	0.015000	0.527363	
mm_168558.1	chr1	166431786	166431986	-	1	NA	NA	NA	-22058	NM_001142948	71592	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	0.035000	0.507463	
mm_244.1	chr1	19209047	19209247	+	1	NA	NA	NA	233	NM_001286340	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.035000	0.477612	
mm_65982.1	chr7	30453700	30453900	-	1	NA	NA	NA	3715	NM_172898	243911	Mm.113908	NM_172898	ENSMUSG00000036915	Kirrel2	C330019F22Rik|NEPH3|NLG1	kin of IRRE like 2 (Drosophila)	protein-coding	0.030000	0.552239	
mm_13946.1	chr2	121295362	121295562	+	1	NA	NA	NA	8	NM_001173506	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.050000	0.671642	
mm_88643.1	chr10	79946185	79946385	+	1	NA	NA	NA	-13867	NM_175450	216156	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.010000	0.597015	
mm_93001.1	chr10	86885692	86885892	-	1	NA	NA	NA	106787	NM_175331	103466	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.005000	0.467662	
mm_149525.1	chr19	12460666	12460866	+	1	NA	NA	NA	-13	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.010000	0.417910	
mm_1637.1	chr1	74511312	74511512	+	1	NA	NA	NA	5352	NM_021383	58184	Mm.291708	NM_021383	ENSMUSG00000026174	Cnot9	2610007F23Rik|AI593551|Fl10|Rqcd1	CCR4-NOT transcription complex, subunit 9	protein-coding	0.015000	0.398010	
mm_60453.1	chr7	44477430	44477630	+	1	NA	NA	NA	-6987	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.398010	
mm_153548.1	chr19	42086227	42086427	-	1	NA	NA	NA	43	NM_198108	226123	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	0.065000	0.646766	
mm_16428.1	chr2	180387964	180388164	+	1	NA	NA	NA	-984	NR_029528	387136		NR_029528	ENSMUSG00000070144	Mir1a-1	Mir1-1|Mirn1-1|Mirn1b|Mirn1c|Mirn1d|mir-1a-1|mmu-mir-1-1|mmu-mir-1a-1	microRNA 1a-1	ncRNA	0.005000	0.378109	
mm_150216.1	chr19	32987852	32988052	+	1	NA	NA	NA	230375	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.005000	0.432836	
mm_157385.1	chrX	38110817	38111017	-	1	NA	NA	NA	-10	NM_001025083	382282	Mm.219322	NM_001025083	ENSMUSG00000071766	Rhox12	Gm1148	reproductive homeobox 12	protein-coding	0.010000	0.522388	
mm_80735.1	chr9	94669802	94670002	+	1	NA	NA	NA	10	NM_177909	331004	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.030000	0.437811	-39(GCTTTAAGAGAG,+,0.00)
mm_169290.1	chr13	9834369	9834569	-	1	NA	NA	NA	-69148	NM_144516	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.140000	0.681592	
mm_135805.1	chr16	57292756	57292956	-	1	NA	NA	NA	-5	NM_027651	71027	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	0.005000	0.422886	75(CCTTATATAATA,+,0.00)
mm_158853.1	chrX	169994034	169994234	-	1	NA	NA	NA	-15217	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.125000	0.736318	
mm_31899.1	chr4	83525478	83525678	+	1	NA	NA	NA	33	NM_001081012	320226	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	0.110000	0.696517	
mm_86584.1	chr10	13008441	13008641	+	1	NA	NA	NA	91	NM_175102	66125	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0.130000	0.651741	
mm_56121.1	chr6	87532304	87532504	-	1	NA	NA	NA	855	NM_001037727	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.010000	0.407960	
mm_172349.1	chr7	113491596	113491796	-	1	NA	NA	NA	-22138	NM_001285831	67420	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.015000	0.457711	-70(CCCTTAAAGCCG,+,0.00)
mm_155240.1	chrX	57212086	57212286	+	1	NA	NA	NA	43	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.010000	0.437811	
mm_103828.1	chr11	83012826	83013026	-	1	NA	NA	NA	7796	NM_001167743	276950	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0.000000	0.393035	
mm_127754.1	chr15	103502942	103503142	+	1	NA	NA	NA	8	NM_008800	18574	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.105000	0.726368	
mm_2965.1	chr1	133020265	133020465	+	1	NA	NA	NA	5051	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	0.000000	0.482587	
mm_55711.1	chr6	72958381	72958581	-	1	NA	NA	NA	2	NM_025284	19240	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.140000	0.746269	47(GTGTATATAAGA,-,0.00)
mm_115320.1	chr13	112418063	112418263	+	1	NA	NA	NA	-45907	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.005000	0.398010	
mm_10029.1	chr1	192137502	192137702	-	1	NA	NA	NA	438	NM_001290278	214742	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	0.120000	0.721393	
mm_94419.1	chr11	5870457	5870657	+	1	NA	NA	NA	7699	NM_008894	18972	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	0.025000	0.532338	
mm_153416.1	chr19	40588396	40588596	-	1	NA	NA	NA	-33	NM_153554	56454	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	0.125000	0.691542	
mm_99705.1	chr11	106160206	106160406	+	1	NA	NA	NA	-164	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.125000	0.721393	
mm_54452.1	chr6	34746199	34746399	-	1	NA	NA	NA	-34133	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.035000	0.582090	
mm_79705.1	chr9	61110881	61111081	+	1	NA	NA	NA	-5595	NR_105026	66785	Mm.158134	NR_105026	ENSMUSG00000111807	4933433G08Rik	-	RIKEN cDNA 4933433G08 gene	ncRNA	0.010000	0.532338	
mm_128584.1	chr15	58034243	58034443	-	1	NA	NA	NA	-49	NM_029418	75758	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.100000	0.651741	
mm_31201.1	chr4	43727093	43727293	+	1	NA	NA	NA	-5	NM_027511	100039781	Mm.18796	NM_027511	ENSMUSG00000071001	Hrct1	3830408D24Rik	histidine rich carboxyl terminus 1	protein-coding	0.010000	0.572139	
mm_160661.1	chr9	119578708	119578908	-	1	NA	NA	NA	208	NM_021544	20271	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding	0.120000	0.781095	
mm_34140.1	chr4	139291617	139291817	+	1	NA	NA	NA	18983	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.010000	0.303483	
mm_92165.1	chr10	67548942	67549142	-	1	NA	NA	NA	-87	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.175000	0.761194	
mm_133134.1	chr16	66272577	66272777	+	1	NA	NA	NA	-384441	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0.020000	0.472637	
mm_37195.1	chr4	117496976	117497176	-	1	NA	NA	NA	-24	NM_025739	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.045000	0.582090	
mm_27372.1	chr3	50442181	50442381	-	1	NA	NA	NA	1332	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.393035	-62(CTCCATAAATGG,-,0.00),-60(CCATAAATGGGG,+,0.00),8(GCCTTTAAGGAC,+,0.00)
mm_66048.1	chr7	30728725	30728925	-	1	NA	NA	NA	709	NM_027215	69804	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	0.015000	0.427861	
mm_35727.1	chr4	44710668	44710868	-	1	NA	NA	NA	-328	NM_008782	18507	Mm.439659	NM_008782	ENSMUSG00000014030	Pax5	BSAP|EBB-1|KLP|Pax-5	paired box 5	protein-coding	0.085000	0.572139	
mm_56549.1	chr6	100244045	100244245	-	1	NA	NA	NA	43213	NM_019743	56353	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.000000	0.338308	
mm_48978.1	chr6	4755028	4755228	+	1	NA	NA	NA	7822	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.055000	0.616915	
mm_92255.1	chr10	70605939	70606139	-	1	NA	NA	NA	-6748	NM_178621	70911	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding	0.000000	0.368159	
mm_39298.1	chr5	5573904	5574104	+	1	NA	NA	NA	205	NR_033499	667705	Mm.376656	NR_033499	ENSMUSG00000073234	Gm8773	EG667705|Gm29287	predicted gene 8773	ncRNA	0.060000	0.611940	-33(TCCTAGAAAAGG,-,0.00)
mm_95229.1	chr11	44519328	44519528	+	1	NA	NA	NA	51	NM_001166553	74315	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.080000	0.721393	
mm_94535.1	chr11	9119188	9119388	+	1	NA	NA	NA	781	NM_001159402	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.030000	0.492537	
mm_133608.1	chr16	91492547	91492747	+	1	NA	NA	NA	7432	NM_010508	15975	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	CD118|Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.030000	0.338308	-85(CGTTTTAAAAGC,-,0.00),-84(GTTTTAAAAGCC,+,0.00)
mm_92200.1	chr10	68136564	68136764	-	1	NA	NA	NA	142062	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.030000	0.577114	
mm_124224.1	chr14	100284831	100285031	-	1	NA	NA	NA	-135135	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.090000	0.676617	
mm_77658.1	chr8	124639238	124639438	-	1	NA	NA	NA	24031	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding	0.030000	0.606965	
mm_156371.1	chrX	139621413	139621613	+	1	NA	NA	NA	10893	NM_023270	66889	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	0.000000	0.318408	
mm_156151.1	chrX	129910806	129911006	+	1	NA	NA	NA	161164	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.000000	0.417910	14(CCATTAATACCA,+,0.00)
mm_54408.1	chr6	31563831	31564031	-	1	NA	NA	NA	6	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	0.145000	0.766169	
mm_42652.1	chr5	118765090	118765290	+	1	NA	NA	NA	-187149	NR_040694	74627	Mm.410828	NR_040694	ENSMUSG00000107144	4930413E15Rik	-	RIKEN cDNA 4930413E15 gene	ncRNA	0.010000	0.323383	
mm_124069.1	chr14	78565490	78565690	-	1	NA	NA	NA	-28730	NM_001164503	219181	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	0.000000	0.293532	-7(TTTTTTATAGTA,+,0.00)
mm_5888.1	chr1	54175746	54175946	-	1	NA	NA	NA	19188	NM_001001883	329152	Mm.132150	NM_172655	ENSMUSG00000042807	Hecw2	A730039N16Rik|D030049F17Rik|Gm971|Nedl2|mKIAA1301	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.000000	0.333333	
mm_59395.1	chr7	26764448	26764648	+	1	NA	NA	NA	7406	NM_007814	13090	Mm.14098	NM_007814	ENSMUSG00000066704	Cyp2b19	CYPIIB19	cytochrome P450, family 2, subfamily b, polypeptide 19	protein-coding	0.005000	0.437811	
mm_98070.1	chr11	85889894	85890094	+	1	NA	NA	NA	-69	NM_011536	21387	Mm.275336	NM_011536	ENSMUSG00000000094	Tbx4	3930401C23	T-box 4	protein-coding	0.040000	0.656716	
mm_101468.1	chr11	30649269	30649469	-	1	NA	NA	NA	27	NM_029344	75572	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	0.065000	0.611940	
mm_28123.1	chr3	86920454	86920654	-	1	NA	NA	NA	330	NM_001195496	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.155000	0.776119	
mm_145362.1	chr18	56677731	56677931	+	1	NA	NA	NA	-29982	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.005000	0.452736	
mm_114747.1	chr13	84222221	84222421	+	1	NA	NA	NA	25	NM_175187	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	0.085000	0.641791	
mm_31279.1	chr4	45824190	45824390	+	1	NA	NA	NA	2537	NM_018741	75426	Mm.3919	NM_018741	ENSMUSG00000035551	Igfbpl1	2810011G06Rik|2810453O06Rik|IGFBPL	insulin-like growth factor binding protein-like 1	protein-coding	0.010000	0.492537	
mm_139709.1	chr17	57459909	57460109	+	1	NA	NA	NA	85305	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.005000	0.378109	
mm_24488.1	chr3	92338978	92339178	+	1	NA	NA	NA	-62	NM_011470	20758	Mm.87820	NM_011470	ENSMUSG00000042212	Sprr2d	-	small proline-rich protein 2D	protein-coding	0.010000	0.457711	
mm_89238.1	chr10	87817135	87817335	+	1	NA	NA	NA	-41030	NM_001314010	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.005000	0.398010	
mm_10218.1	chr2	5951354	5951554	+	1	NA	NA	NA	-15	NM_001081132	326622	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	0.105000	0.751244	
mm_78314.1	chr9	23306613	23306813	+	1	NA	NA	NA	83637	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.010000	0.482587	
mm_48276.1	chr5	137963037	137963237	-	1	NA	NA	NA	-178	NM_080450	118446	Mm.332771	NM_080450	ENSMUSG00000056966	Gjc3	Cx29|Gje1	gap junction protein, gamma 3	protein-coding	0.025000	0.487562	
mm_55120.1	chr6	50404814	50405014	-	1	NA	NA	NA	-22077	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.035000	0.537313	
mm_47767.1	chr5	131538538	131538738	-	1	NA	NA	NA	-231116	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.115000	0.706468	
mm_113658.1	chr13	42680790	42680990	+	1	NA	NA	NA	91	NM_001302635	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.025000	0.552239	
mm_4466.1	chr1	173350064	173350264	+	1	NA	NA	NA	-16661	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	0.010000	0.512438	
mm_100905.1	chr11	6213648	6213848	-	1	NA	NA	NA	-13297	NM_173748	209586	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	0.005000	0.402985	
mm_132266.1	chr16	32877703	32877903	+	1	NA	NA	NA	19	NM_001159349	69823	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	0.135000	0.736318	
mm_601.1	chr1	39900823	39901023	+	1	NA	NA	NA	10	NM_008696	26921	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.195000	0.840796	
mm_143288.1	chr17	65867533	65867733	-	1	NA	NA	NA	17290	NM_001198949	19765	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.045000	0.552239	
mm_167752.1	chr9	110420787	110420987	+	1	NA	NA	NA	1079	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.005000	0.497512	
mm_110683.1	chr12	67122801	67123001	-	1	NA	NA	NA	99648	NM_001193266	320772	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	0.005000	0.313433	
mm_106278.1	chr11	118130596	118130796	-	1	NA	NA	NA	-1477	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.020000	0.547264	
mm_104118.1	chr11	86741053	86741253	-	1	NA	NA	NA	16339	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.005000	0.378109	
mm_39371.1	chr5	12374563	12374763	+	1	NA	NA	NA	-8503	NM_028882	108151	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.030000	0.457711	
mm_110530.1	chr12	54986272	54986472	-	1	NA	NA	NA	-36	NM_013815	217578	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.075000	0.592040	
mm_154598.1	chrX	7593149	7593349	+	1	NA	NA	NA	12171	NM_138603	54638	Mm.288192	NM_138603	ENSMUSG00000031143	Ccdc22	AI481216|DXImx40e|Ppp1r3f|Sfc22	coiled-coil domain containing 22	protein-coding	0.000000	0.527363	
mm_25783.1	chr3	126653431	126653631	+	1	NA	NA	NA	56580	NM_023813	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.005000	0.383085	-33(GGGTATAAAAGA,-,0.00)
mm_171925.1	chr5	5998738	5998938	+	1	NA	NA	NA	-249521	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.005000	0.517413	
mm_131064.1	chr16	4594609	4594809	+	1	NA	NA	NA	-4	NM_031184	83396	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0.090000	0.761194	
mm_16932.1	chr2	13793937	13794137	-	1	NA	NA	NA	-517	NM_145838	241230	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	0.025000	0.527363	
mm_101758.1	chr11	43425591	43425791	-	1	NA	NA	NA	290	NM_013917	30939	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	0.025000	0.442786	
mm_107451.1	chr12	36816149	36816349	+	1	NA	NA	NA	44	NR_039558	100628578		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA	0.030000	0.447761	
mm_153927.1	chr19	47343484	47343684	-	1	NA	NA	NA	-69995	NR_105961	102466782		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.120000	0.741294	
mm_124567.1	chr14	124192290	124192490	-	1	NA	NA	NA	156	NM_010201	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.070000	0.636816	
mm_153427.1	chr19	40821375	40821575	-	1	NA	NA	NA	-9804	NM_172839	240665	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.005000	0.522388	
mm_166117.1	chr4	150797856	150798056	-	1	NA	NA	NA	56993	NR_040649	73348	Mm.396218	NR_040649	ENSMUSG00000078492	1700045H11Rik	-	RIKEN cDNA 1700045H11 gene	ncRNA	0.005000	0.388060	
mm_38690.1	chr4	145212679	145212879	-	1	NA	NA	NA	-17774	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.000000	0.407960	89(GAGTATTAAAAG,-,0.00)
mm_9732.1	chr1	180229880	180230080	-	1	NA	NA	NA	15970	NM_011183	19165	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.020000	0.616915	
mm_99206.1	chr11	101022865	101023065	+	1	NA	NA	NA	-7375	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.010000	0.482587	
mm_171722.1	chr4	86856257	86856457	-	1	NA	NA	NA	1010	NM_009096	20104	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	0.025000	0.462687	
mm_4460.1	chr1	172699275	172699475	+	1	NA	NA	NA	1319	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding	0.000000	0.288557	
mm_74907.1	chr8	25205754	25205954	-	1	NA	NA	NA	-4312	NM_177089	320165	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.020000	0.452736	
mm_3891.1	chr1	161395335	161395535	+	1	NA	NA	NA	-3	NM_009452	22164	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	0.015000	0.462687	
mm_18357.1	chr2	58267935	58268135	-	1	NA	NA	NA	-8744	NR_040365	100502932	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	OTTMUSG00000012672	predicted gene 13544	ncRNA	0.010000	0.318408	
mm_67661.1	chr7	86775668	86775868	-	1	NA	NA	NA	96	NM_016770	53320	Mm.269137	NM_016770	ENSMUSG00000001773	Folh1	GCP2|mopsm	folate hydrolase 1	protein-coding	0.035000	0.537313	
mm_86191.1	chr9	119564599	119564799	-	1	NA	NA	NA	-2021	NM_001253860	20271	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding	0.025000	0.447761	
mm_80345.1	chr9	75167132	75167332	+	1	NA	NA	NA	-64782	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.030000	0.477612	
mm_43551.1	chr5	137571285	137571485	+	1	NA	NA	NA	580	NM_001289507	50765	Mm.21757	NM_015799	ENSMUSG00000029716	Tfr2	Trfr2	transferrin receptor 2	protein-coding	0.025000	0.626866	
mm_35265.1	chr4	19895669	19895869	-	1	NA	NA	NA	26797	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.010000	0.507463	
mm_29794.1	chr3	127691198	127691398	-	1	NA	NA	NA	58153	NM_009718	11924	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	0.005000	0.527363	
mm_8967.1	chr1	165194238	165194438	-	1	NA	NA	NA	95	NM_145512	108735	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0.115000	0.721393	
mm_4951.1	chr1	191224392	191224592	+	1	NA	NA	NA	-41159	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.135000	0.691542	
mm_137613.1	chr17	28271612	28271812	+	1	NA	NA	NA	4	NR_045427	69050	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0.010000	0.606965	69(CTCTTTTAGAGG,-,0.00),70(TCTTTTAGAGGG,+,0.00)
mm_58126.1	chr6	140101068	140101268	-	1	NA	NA	NA	59643	NM_007605	12344	Mm.12817	NM_007605	ENSMUSG00000041791	Capza3	510-4|Cappa3|Gsg3|Tex8|repro32	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding	0.005000	0.427861	
mm_114835.1	chr13	92530815	92531015	+	1	NA	NA	NA	-105	NM_173392	218441	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	0.110000	0.686567	
mm_119664.1	chr14	52279506	52279706	+	1	NA	NA	NA	-211	NM_172601	76338	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	0.100000	0.631841	
mm_81481.1	chr9	109948179	109948379	+	1	NA	NA	NA	16505	NM_008633	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.010000	0.278607	-81(TCTTATATAGTT,+,0.00)
mm_33860.1	chr4	135911717	135911917	+	1	NA	NA	NA	137	NM_001305278	12802	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0.025000	0.532338	
mm_88962.1	chr10	81394000	81394200	+	1	NA	NA	NA	1036	NM_001099917	72273	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.010000	0.512438	
mm_755.1	chr1	43887897	43888097	+	1	NA	NA	NA	-45997	NM_001310540	22019	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.020000	0.432836	
mm_98844.1	chr11	97629764	97629964	+	1	NA	NA	NA	-148	NM_175332	103551	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0.110000	0.716418	
mm_171360.1	chr4	117156012	117156212	-	1	NA	NA	NA	20	NM_009098	20116	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	0.105000	0.686567	
mm_11909.1	chr2	52037893	52038093	+	1	NA	NA	NA	-120	NM_009398	21930	Mm.3509	NM_009398	ENSMUSG00000053475	Tnfaip6	TSG-6|Tnfip6|Tsg6	tumor necrosis factor alpha induced protein 6	protein-coding	0.035000	0.442786	
mm_62412.1	chr7	101240959	101241159	+	1	NA	NA	NA	61029	NM_001111111	73683	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.010000	0.338308	48(GTTTTAATAGGG,+,0.00)
mm_55915.1	chr6	83775573	83775773	-	1	NA	NA	NA	139	NM_009357	21766	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	0.125000	0.721393	
mm_106173.1	chr11	116679962	116680162	-	1	NA	NA	NA	5465	NR_028570	100216538		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0.055000	0.577114	
mm_113046.1	chr13	23578235	23578435	+	1	NA	NA	NA	2572	NM_178204	319149	Mm.347699	NM_178204	ENSMUSG00000099583	Hist1h3d	H3-b	histone cluster 1, H3d	protein-coding	0.010000	0.363184	
mm_126057.1	chr15	76950071	76950271	+	1	NA	NA	NA	1627	NM_054099	117171	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0.005000	0.348259	
mm_108103.1	chr12	75277619	75277819	+	1	NA	NA	NA	-30594	NM_023275	80837	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	0.000000	0.492537	
mm_28030.1	chr3	83046733	83046933	-	1	NA	NA	NA	3030	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.040000	0.557214	
mm_96257.1	chr11	62603041	62603241	+	1	NA	NA	NA	55	NR_028526	100217426		NR_028526	ENSMUSG00000064437	Snord49b	MBII-252|MBII-366	small nucleolar RNA, C/D box 49B	snoRNA	0.080000	0.542289	
mm_73309.1	chr8	105170783	105170983	+	1	NA	NA	NA	209	NM_001161458	12400	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0.135000	0.771144	
mm_63662.1	chr7	129591765	129591965	+	1	NA	NA	NA	2	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.070000	0.587065	
mm_123805.1	chr14	70520924	70521124	-	1	NA	NA	NA	-764	NR_033241	12153	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.035000	0.527363	
mm_71380.1	chr8	45885435	45885635	+	1	NA	NA	NA	50	NM_016798	53318	Mm.282900	NM_016798	ENSMUSG00000031636	Pdlim3	AI463105|ALP|Actn2lp	PDZ and LIM domain 3	protein-coding	0.065000	0.616915	
mm_113943.1	chr13	49766238	49766438	+	1	NA	NA	NA	84208	NM_172015	105148	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	0.020000	0.537313	52(CTGTTTTTAAGC,-,0.00)
mm_154351.1	chrM	5742	5942	+	1	NA	NA	NA	NA	NA									0.015000	0.412935	
mm_66291.1	chr7	38017923	38018123	-	1	NA	NA	NA	1529	NM_011274	19777	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	0.010000	0.412935	
mm_91492.1	chr10	37135715	37135915	-	1	NA	NA	NA	3111	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.015000	0.348259	
mm_40188.1	chr5	36464695	36464895	+	1	NA	NA	NA	59	NR_126490	76710	Mm.165495	NR_126488	ENSMUSG00000039563	2210406O10Rik	-	RIKEN cDNA 2210406O10 gene	ncRNA	0.100000	0.661692	
mm_83732.1	chr9	51056920	51057120	-	1	NA	NA	NA	20074	NM_001033534	244864	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0.000000	0.537313	
mm_163192.1	chr11	94991102	94991302	+	1	NA	NA	NA	-10	NM_172261	217124	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.115000	0.741294	
mm_68386.1	chr7	109438980	109439180	-	1	NA	NA	NA	-27	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	0.115000	0.691542	
mm_62602.1	chr7	105736681	105736881	+	1	NA	NA	NA	56	NM_010562	16202	Mm.274846	NM_010562	ENSMUSG00000030890	Ilk	AA511515|ESTM24	integrin linked kinase	protein-coding	0.075000	0.696517	
mm_97460.1	chr11	78245682	78245882	+	1	NA	NA	NA	36	NM_009143	20316	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	0.090000	0.616915	
mm_10015.1	chr1	192061629	192061829	-	1	NA	NA	NA	30870	NM_011633	22033	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.010000	0.447761	
mm_104031.1	chr11	86257318	86257518	-	1	NA	NA	NA	150	NM_027421	70422	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0.035000	0.507463	
mm_99136.1	chr11	100320404	100320604	+	1	NA	NA	NA	555	NM_011508	20918	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.070000	0.681592	
mm_156260.1	chrX	136822711	136822911	+	1	NA	NA	NA	65	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.010000	0.477612	-89(GTCTCTTTAAGG,-,0.00),-87(CTCTTTAAGGGG,+,0.00),-86(TCTTTAAGGGGG,+,0.00)
mm_60301.1	chr7	44052202	44052402	+	1	NA	NA	NA	12	NM_020268	16619	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	0.010000	0.542289	-34(GCGTTTTTAAAG,-,0.00),-32(GTTTTTAAAGTC,+,0.00)
mm_30874.1	chr4	32238658	32238858	+	1	NA	NA	NA	-178677	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.150000	0.726368	
mm_101913.1	chr11	49712600	49712800	-	1	NA	NA	NA	22	NM_212484	104625	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0.145000	0.716418	
mm_125230.1	chr15	34134280	34134480	+	1	NA	NA	NA	51661	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.010000	0.402985	
mm_47054.1	chr5	116288905	116289105	-	1	NA	NA	NA	-20	NM_177759	269693	Mm.10946	NM_177759	ENSMUSG00000043913	Ccdc60	AU018954|C130098D09	coiled-coil domain containing 60	protein-coding	0.070000	0.621891	
mm_84694.1	chr9	72400142	72400342	-	1	NA	NA	NA	-38287	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.015000	0.402985	
mm_142771.1	chr17	49564192	49564392	-	1	NA	NA	NA	45	NM_001008231	76441	Mm.211275	NM_001008231	ENSMUSG00000040260	Daam2	2310016D11Rik|AI843643|AW557870	dishevelled associated activator of morphogenesis 2	protein-coding	0.090000	0.686567	
mm_86213.1	chr9	120012741	120012941	-	1	NA	NA	NA	10757	NM_011724	22437	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.015000	0.507463	
mm_145953.1	chr18	67641510	67641710	+	1	NA	NA	NA	11	NM_134138	107047	Mm.150701	NM_134138	ENSMUSG00000024537	Psmg2	1700017I17Rik|AW545363|Clast3|Tnfsf5ip1	proteasome (prosome, macropain) assembly chaperone 2	protein-coding	0.125000	0.706468	
mm_115905.1	chr13	23423760	23423960	-	1	NA	NA	NA	6	NM_013924	30946	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0.075000	0.606965	
mm_18338.1	chr2	58137662	58137862	-	1	NA	NA	NA	22360	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.015000	0.467662	
mm_142406.1	chr17	45461524	45461724	-	1	NA	NA	NA	13314	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.010000	0.522388	
mm_99423.1	chr11	102393358	102393558	+	1	NA	NA	NA	55	NM_001252347	51799	Mm.2560	NM_016759	ENSMUSG00000006575	Rundc3a	RPIP-8|Rap2ip|Rpip8	RUN domain containing 3A	protein-coding	0.095000	0.726368	
mm_169370.1	chr14	3412538	3412738	+	1	NA	NA	NA	24	NR_033121	100041530	Mm.444311	NR_033121	ENSMUSG00000096488	Gm10409	EG666890|ENSMUSG00000072740|Gm8348	predicted pseudogene 8348	pseudo	0.115000	0.761194	
mm_13917.1	chr2	120587671	120587871	+	1	NA	NA	NA	20100	NM_009222	20619	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	0.015000	0.452736	
mm_19388.1	chr2	91312570	91312770	-	1	NA	NA	NA	47555	NM_023854	77038	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0.010000	0.547264	
mm_57916.1	chr6	133851883	133852083	-	1	NA	NA	NA	1684	NM_010594	16483	Mm.13052	NM_010594	ENSMUSG00000032758	Kap	AW146435|FKSG22	kidney androgen regulated protein	protein-coding	0.010000	0.427861	
mm_107060.1	chr12	16653896	16654096	+	1	NA	NA	NA	526	NM_008747	18217	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT2R|NTRL	neurotensin receptor 2	protein-coding	0.100000	0.696517	
mm_101429.1	chr11	29944694	29944894	-	1	NA	NA	NA	81239	NM_146016	237711	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0.005000	0.412935	
mm_139125.1	chr17	47504955	47505155	+	1	NA	NA	NA	4	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.070000	0.631841	
mm_48699.1	chr5	146920279	146920479	-	1	NA	NA	NA	-28278	NM_025652	66596	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0.050000	0.626866	
mm_145329.1	chr18	55939380	55939580	+	1	NA	NA	NA	-492652	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.025000	0.358209	
mm_46676.1	chr5	109553100	109553300	-	1	NA	NA	NA	5793	NM_016715	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.035000	0.552239	
mm_52492.1	chr6	114652310	114652510	+	1	NA	NA	NA	9313	NM_001253717	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.015000	0.547264	-58(GCATTTAGACAC,+,0.00)
mm_151461.1	chr19	58606229	58606429	+	1	NA	NA	NA	0	NR_038136	69055	Mm.396318	NR_038136	ENSMUSG00000100001	1810007D17Rik	-	RIKEN cDNA 1810007D17 gene	ncRNA	0.025000	0.482587	-67(CCCTTTATAAGC,+,0.00),-67(CCCTTTATAAGC,-,0.00),-65(CTTTATAAGCTC,+,0.00)
mm_95984.1	chr11	58978316	58978516	+	1	NA	NA	NA	323	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.125000	0.686567	
mm_71139.1	chr8	39045930	39046130	+	1	NA	NA	NA	40163	NM_030254	80286	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	0.005000	0.492537	77(GGCTTTTTAAAA,-,0.00)
mm_108426.1	chr12	82206031	82206231	+	1	NA	NA	NA	36115	NM_001167983	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.010000	0.398010	
mm_118423.1	chr14	7890520	7890720	+	1	NA	NA	NA	72663	NM_134080	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.000000	0.442786	
mm_164401.1	chr16	34920969	34921169	+	1	NA	NA	NA	18260	NR_040536	76649	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.030000	0.572139	
mm_95649.1	chr11	53724005	53724205	+	1	NA	NA	NA	3311	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.005000	0.378109	58(GTCCATATATGC,-,0.00)
mm_95219.1	chr11	44215494	44215694	+	1	NA	NA	NA	-184469	NM_001303244	16160	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.005000	0.398010	-28(TACCATATAAGC,-,0.00)
mm_5433.1	chr1	34817986	34818186	-	1	NA	NA	NA	16364	NM_183019	226970	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef|ENSMUSG00000070955	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0.015000	0.517413	
mm_19599.1	chr2	102400436	102400636	-	1	NA	NA	NA	364	NM_020267	80985	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	0.150000	0.731343	
mm_105455.1	chr11	104503601	104503801	-	1	NA	NA	NA	46919	NM_001285990	217232	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	0.005000	0.393035	
mm_85746.1	chr9	108578525	108578725	-	1	NA	NA	NA	45	NM_031392	83669	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	0.090000	0.631841	
mm_62285.1	chr7	99863399	99863599	+	1	NA	NA	NA	4281	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.020000	0.507463	
mm_134623.1	chr16	21649983	21650183	-	1	NA	NA	NA	44582	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.000000	0.368159	
mm_171856.1	chr5	20127320	20127520	-	1	NA	NA	NA	219902	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.085000	0.696517	
mm_102006.1	chr11	51602530	51602730	-	1	NA	NA	NA	4251	NM_001048061	15384	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.015000	0.542289	
mm_38730.1	chr4	145240667	145240867	-	1	NA	NA	NA	6103	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.000000	0.532338	
mm_6052.1	chr1	60098011	60098211	-	1	NA	NA	NA	23	NM_001199061	57750	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	0.050000	0.507463	88(GAGTATTAAAAG,-,0.00)
mm_139160.1	chr17	47546302	47546502	+	1	NA	NA	NA	41351	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.010000	0.507463	
mm_5994.1	chr1	58712134	58712334	-	1	NA	NA	NA	743	NM_001293804	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.015000	0.457711	
mm_27718.1	chr3	68786756	68786956	-	1	NA	NA	NA	-82730	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.010000	0.487562	
mm_122807.1	chr14	54575587	54575787	-	1	NA	NA	NA	1974	NM_010590	16475	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	0.070000	0.656716	
mm_105332.1	chr11	102946458	102946658	-	1	NA	NA	NA	-97	NM_011795	23829	Mm.57154	NM_011795	ENSMUSG00000045532	C1ql1	C1qrf|CRF|CTRP14|gliacolin	complement component 1, q subcomponent-like 1	protein-coding	0.170000	0.815920	
mm_48202.1	chr5	137533151	137533351	-	1	NA	NA	NA	-22	NM_010312	14693	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	0.125000	0.726368	
mm_112532.1	chr13	9418800	9419000	+	1	NA	NA	NA	142375	NM_001081426	208440	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.000000	0.383085	
mm_71441.1	chr8	46513197	46513397	+	1	NA	NA	NA	22331	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.025000	0.492537	
mm_33980.1	chr4	137707393	137707593	+	1	NA	NA	NA	-12	NM_001331215	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.130000	0.805970	
mm_132864.1	chr16	48594554	48594754	+	1	NA	NA	NA	163417	NM_010816	17450	Mm.250060	NM_010816	ENSMUSG00000022652	Morc1	Morc	microrchidia 1	protein-coding	0.020000	0.447761	
mm_80372.1	chr9	75347791	75347991	+	1	NA	NA	NA	133	NM_013479	12049	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	0.040000	0.572139	
mm_74194.1	chr8	123805757	123805957	+	1	NA	NA	NA	-139	NM_009003	19341	Mm.9221	NM_009003	ENSMUSG00000019478	Rab4a	AI848268|Rab4	RAB4A, member RAS oncogene family	protein-coding	0.035000	0.641791	
mm_153707.1	chr19	44397768	44397968	-	1	NA	NA	NA	9841	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.020000	0.388060	
mm_17103.1	chr2	23961246	23961446	-	1	NA	NA	NA	88033	NM_080462	140483	Mm.33120	NM_080462	ENSMUSG00000026986	Hnmt	1500031F01Rik|AI788969	histamine N-methyltransferase	protein-coding	0.000000	0.388060	
mm_44324.1	chr5	9725336	9725536	-	1	NA	NA	NA	-84	NM_181850	108069	Mm.318966	NM_181850	ENSMUSG00000003974	Grm3	0710001G23Rik|Gprc1c|mGlu3|mGluR3	glutamate receptor, metabotropic 3	protein-coding	0.040000	0.676617	
mm_50061.1	chr6	41187298	41187498	+	1	NA	NA	NA	-114874	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.010000	0.388060	
mm_160444.1	chr8	104293074	104293274	-	1	NA	NA	NA	7	NM_027022	73381	Mm.272746	NM_027022	ENSMUSG00000074127	Cmtm2a	1700001K04Rik|1700041N15Rik|1700063K20Rik|AI449770|ARR19|C32|CKLF3|CKLF4|CKLF5|Cklf|Cklf1|Cklfsf2-1b|Cklfsf2a|UCK-1	CKLF-like MARVEL transmembrane domain containing 2A	protein-coding	0.030000	0.567164	
mm_51546.1	chr6	83237471	83237671	+	1	NA	NA	NA	196	NM_001166067	232156	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	0.025000	0.527363	
mm_64069.1	chr7	140882336	140882536	+	1	NA	NA	NA	42	NM_011875	23997	Mm.29760	NM_011875	ENSMUSG00000025487	Psmd13	S11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	protein-coding	0.080000	0.641791	
mm_160434.1	chr8	93048029	93048229	-	1	NA	NA	NA	63	NM_001013764	244595	Mm.390089	NM_001013764	ENSMUSG00000071047	Ces1a	Ces1l|EG244595|Gm4976	carboxylesterase 1A	protein-coding	0.005000	0.507463	
mm_124354.1	chr14	105114587	105114787	-	1	NA	NA	NA	-11	NR_040628	100502987	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0.010000	0.348259	
mm_130474.1	chr15	98727482	98727682	-	1	NA	NA	NA	616	NM_024169	66120	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.065000	0.611940	
mm_16667.1	chr2	6721797	6721997	-	1	NA	NA	NA	-235	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.030000	0.572139	
mm_109051.1	chr12	104339162	104339362	+	1	NA	NA	NA	776	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.000000	0.527363	
mm_84739.1	chr9	75375870	75376070	-	1	NA	NA	NA	28212	NM_013479	12049	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	0.035000	0.522388	-64(GCTTTAAAAATC,+,0.00)
mm_39142.1	chr4	155345393	155345593	-	1	NA	NA	NA	296	NM_001039079	18762	Mm.28561	NM_008860	ENSMUSG00000029053	Prkcz	AI098070|C80388|Pkcz|R74924|aPKCzeta|nPKC-zeta|zetaPKC	protein kinase C, zeta	protein-coding	0.055000	0.611940	-47(CTCCCTTAAAGG,-,0.00),-46(TCCCTTAAAGGG,-,0.00),-45(CCCTTAAAGGGA,+,0.00),-44(CCTTAAAGGGAC,+,0.00)
mm_159144.1	chr2	86413891	86414091	-	1	NA	NA	NA	59	NM_207134	259022	Mm.377793	NM_207134	ENSMUSG00000075185	Olfr1061	MOR188-1|MOR188-7|MOR188-9|Olfr1515	olfactory receptor 1061	protein-coding	0.005000	0.402985	
mm_93887.1	chr10	125328405	125328605	-	1	NA	NA	NA	30	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.020000	0.472637	
mm_89105.1	chr10	84584557	84584757	+	1	NA	NA	NA	7710	NM_146008	216198	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	0.005000	0.487562	
mm_13827.1	chr2	119267054	119267254	+	1	NA	NA	NA	4072	NM_145530	228543	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	0.030000	0.542289	
mm_89543.1	chr10	94575184	94575384	+	1	NA	NA	NA	27	NM_001168684	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.010000	0.562189	
mm_102742.1	chr11	67253949	67254149	-	1	NA	NA	NA	16237	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.020000	0.532338	
mm_115542.1	chr13	6648685	6648885	-	1	NA	NA	NA	-14	NM_001291071	56421	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.085000	0.696517	
mm_20311.1	chr2	127247674	127247874	-	1	NA	NA	NA	42	NM_025296	26371	Mm.45179	NM_025296	ENSMUSG00000003662	Ciao1	AW210570|Wdr39	cytosolic iron-sulfur protein assembly 1	protein-coding	0.075000	0.572139	
mm_5876.1	chr1	53823854	53824054	-	1	NA	NA	NA	-25470	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.015000	0.472637	
mm_24042.1	chr3	87846787	87846987	+	1	NA	NA	NA	132	NM_021309	27371	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	0.015000	0.487562	67(CCTTTTCGAGAC,+,0.00)
mm_142559.1	chr17	46640000	46640200	-	1	NA	NA	NA	5044	NM_029091	74764	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0.020000	0.587065	
mm_12014.1	chr2	57368357	57368557	+	1	NA	NA	NA	130075	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.020000	0.427861	
mm_146357.1	chr18	82578917	82579117	+	1	NA	NA	NA	24509	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.045000	0.567164	
mm_96348.1	chr11	66956544	66956744	+	1	NA	NA	NA	6	NR_130315	71576	Mm.340077	NR_130315	ENSMUSG00000085683	9130409J20Rik	-	RIKEN cDNA 9130409J20 gene	ncRNA	0.030000	0.582090	
mm_171460.1	chr4	145670536	145670736	+	1	NA	NA	NA	-61	NM_001103158	100041379	Mm.276881	NM_001103158	ENSMUSG00000058186	Zfp980	Gm13242|OTTMUSG00000011070	zinc finger protein 980	protein-coding	0.015000	0.472637	
mm_141432.1	chr17	29490197	29490397	-	1	NA	NA	NA	-748	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.070000	0.606965	
mm_49257.1	chr6	17463468	17463668	+	1	NA	NA	NA	-389	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.060000	0.646766	
mm_170498.1	chr19	24289806	24290006	-	1	NA	NA	NA	-9320	NM_008044	14297	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	0.010000	0.477612	
mm_127931.1	chr15	10482689	10482889	-	1	NA	NA	NA	3148	NM_026396	67832	Mm.28057	NM_026396	ENSMUSG00000022247	Brix1	1110064N10Rik|Bxdc2|C76935	BRX1, biogenesis of ribosomes	protein-coding	0.000000	0.363184	-74(GGCTATTAAGGA,-,0.00)
mm_64386.1	chr7	142476913	142477113	+	1	NA	NA	NA	0	NM_001271523	16985	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.035000	0.606965	
mm_73784.1	chr8	117095767	117095967	+	1	NA	NA	NA	2	NM_001163028	63857	Mm.174133	NM_021486	ENSMUSG00000031845	Bco1	Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX	beta-carotene oxygenase 1	protein-coding	0.015000	0.507463	
mm_86138.1	chr9	116715349	116715549	-	1	NA	NA	NA	537034	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.010000	0.393035	
mm_76134.1	chr8	81004603	81004803	-	1	NA	NA	NA	10203	NM_027554	74841	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	0.000000	0.353234	
mm_105944.1	chr11	115276799	115276999	-	1	NA	NA	NA	70	NM_007997	14149	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	-	ferredoxin reductase	protein-coding	0.065000	0.661692	
mm_21125.1	chr2	153986364	153986564	-	1	NA	NA	NA	11519	NM_001080811	545477	Mm.379973	NM_001080811	ENSMUSG00000078998	Bpifa6	EG545477|Gm5840|Splunc6	BPI fold containing family A, member 6	protein-coding	0.020000	0.552239	
mm_369.1	chr1	33974634	33974834	+	1	NA	NA	NA	-37091	NM_133833	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.025000	0.512438	
mm_23685.1	chr3	68691246	68691446	+	1	NA	NA	NA	-78	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.070000	0.572139	
mm_27206.1	chr3	35754413	35754613	-	1	NA	NA	NA	375	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.165000	0.800995	
mm_155702.1	chrX	95325038	95325238	+	1	NA	NA	NA	119702	NM_175179	72345	Mm.182867	NM_175179	ENSMUSG00000050332	Amer1	2810002O09Rik|AW492303|Fam123b|Wtx	APC membrane recruitment 1	protein-coding	0.000000	0.303483	-72(CCTTAAAGAAGC,+,0.00)
mm_40691.1	chr5	65763948	65764148	+	1	NA	NA	NA	527	NM_001024917	333789	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.175000	0.800995	
mm_62120.1	chr7	96694710	96694910	+	1	NA	NA	NA	106739	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA	0.030000	0.631841	
mm_45879.1	chr5	88328245	88328445	-	1	NA	NA	NA	11033	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.010000	0.472637	
mm_48068.1	chr5	136581575	136581775	-	1	NA	NA	NA	-14185	NM_001291238	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.030000	0.487562	
mm_143983.1	chr17	87611533	87611733	-	1	NA	NA	NA	-24346	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.010000	0.398010	
mm_103780.1	chr11	82764176	82764376	-	1	NA	NA	NA	45	NM_009839	12467	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0.075000	0.606965	
mm_131553.1	chr16	18028560	18028760	+	1	NA	NA	NA	-24200	NM_010047	13353	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0.020000	0.542289	
mm_128179.1	chr15	34495055	34495255	-	1	NA	NA	NA	91	NM_008287	15473	Mm.491154	NM_008287	ENSMUSG00000022323	Rida	HR12|HRP12|Hrsp12	reactive intermediate imine deaminase A homolog	protein-coding	0.040000	0.527363	
mm_79147.1	chr9	47708800	47709000	+	1	NA	NA	NA	109308	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.005000	0.393035	
mm_72343.1	chr8	79639275	79639475	+	1	NA	NA	NA	-301	NM_001256033	73945	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.115000	0.706468	
mm_144466.1	chr18	23753614	23753814	+	1	NA	NA	NA	-11	NM_001162941	212307	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.070000	0.572139	
mm_33182.1	chr4	126096619	126096819	+	1	NA	NA	NA	66	NM_138721	116748	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	0.095000	0.666667	
mm_140920.1	chr17	24203000	24203200	-	1	NA	NA	NA	2462	NM_001163851	224617	Mm.301585	NM_173186	ENSMUSG00000036473	Tbc1d24	9630033P11|C530046L02Rik|mKIAA1171	TBC1 domain family, member 24	protein-coding	0.005000	0.532338	
mm_153928.1	chr19	47343523	47343723	-	1	NA	NA	NA	-70034	NR_105961	102466782		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.140000	0.776119	
mm_111450.1	chr12	98270914	98271114	-	1	NA	NA	NA	2379	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.035000	0.457711	
mm_129868.1	chr15	83377247	83377447	-	1	NA	NA	NA	-10050	NR_027980	69291	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0.015000	0.532338	
mm_103832.1	chr11	83020166	83020366	-	1	NA	NA	NA	456	NM_001167743	276950	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0.020000	0.442786	
mm_113919.1	chr13	49548491	49548691	+	1	NA	NA	NA	4148	NM_025711	66695	Mm.383216	NM_025711	ENSMUSG00000021388	Aspn	4631401G09Rik|AA986886|Plap1|Slrr1c	asporin	protein-coding	0.005000	0.422886	
mm_102002.1	chr11	51578450	51578650	-	1	NA	NA	NA	-6207	NM_028398	72947	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.015000	0.552239	-32(CTGTATTAAAGA,-,0.00)
mm_139308.1	chr17	48348563	48348763	+	1	NA	NA	NA	2262	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.055000	0.621891	
mm_97139.1	chr11	75193895	75194095	+	1	NA	NA	NA	2	NM_177708	237847	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0.120000	0.736318	
mm_40354.1	chr5	47869860	47870060	+	1	NA	NA	NA	-113195	NR_111900	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding	0.015000	0.437811	50(CGCTTTAAAAGG,-,0.00),51(GCTTTAAAAGGG,+,0.00)
mm_151414.1	chr19	56721991	56722191	+	1	NA	NA	NA	-281	NM_007419	11554	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.120000	0.781095	
mm_122201.1	chr14	31781525	31781725	-	1	NA	NA	NA	48790	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.030000	0.502488	
mm_30035.1	chr3	135691296	135691496	-	1	NA	NA	NA	151	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.145000	0.756219	
mm_117544.1	chr13	83729034	83729234	-	1	NA	NA	NA	1028	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.010000	0.348259	
mm_57865.1	chr6	129622598	129622798	-	1	NA	NA	NA	-15	NM_033078	27007	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	0.005000	0.363184	
mm_38339.1	chr4	137758587	137758787	-	1	NA	NA	NA	7788	NM_001287172	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.040000	0.512438	
mm_10915.1	chr2	25395784	25395984	+	1	NA	NA	NA	10	NM_009849	12496	Mm.482100	NM_009849	ENSMUSG00000015085	Entpd2	Cd39l1|NTPDase2	ectonucleoside triphosphate diphosphohydrolase 2	protein-coding	0.065000	0.681592	
mm_123252.1	chr14	61046064	61046264	-	1	NA	NA	NA	691	NM_013869	29820	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.065000	0.527363	
mm_115380.1	chr13	113096118	113096318	+	1	NA	NA	NA	4763	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.015000	0.422886	
mm_47609.1	chr5	125119489	125119689	-	1	NA	NA	NA	59625	NM_001253905	20602	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.030000	0.592040	
mm_22496.1	chr3	7133195	7133395	+	1	NA	NA	NA	-233309	NM_008862	18767	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	0.000000	0.442786	-78(GCTTTTCTAGGT,+,0.00)
mm_131150.1	chr16	6698122	6698322	+	1	NA	NA	NA	-371613	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.010000	0.482587	
mm_31871.1	chr4	80834113	80834313	+	1	NA	NA	NA	0	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.005000	0.482587	
mm_30762.1	chr4	15957870	15958070	+	1	NA	NA	NA	3	NM_013752	27354	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	0.140000	0.716418	
mm_11765.1	chr2	38536036	38536236	+	1	NA	NA	NA	24260	NM_001159631	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.025000	0.517413	
mm_144786.1	chr18	35858599	35858799	+	1	NA	NA	NA	28881	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.070000	0.601990	
mm_123625.1	chr14	68121267	68121467	-	1	NA	NA	NA	-2385	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.010000	0.437811	
mm_168820.1	chr1	22220009	22220209	+	1	NA	NA	NA	212734	NM_053270	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.010000	0.378109	
mm_73187.1	chr8	95346796	95346996	+	1	NA	NA	NA	-5400	NM_008609	17388	Mm.217116	NM_008609	ENSMUSG00000031790	Mmp15	AI503551|MT-MMP 2|MT2-MMP	matrix metallopeptidase 15	protein-coding	0.020000	0.522388	
mm_123610.1	chr14	68120200	68120400	-	1	NA	NA	NA	-3452	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.005000	0.512438	
mm_156882.1	chrX	166344664	166344864	+	1	NA	NA	NA	211	NM_001177960	14758	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	0.030000	0.552239	47(GTCTTTATGGAC,+,0.00)
mm_88127.1	chr10	69279941	69280141	+	1	NA	NA	NA	66847	NM_001252638	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.005000	0.452736	-71(GCATTTAAATCC,+,0.00)
mm_168852.1	chr12	24097163	24097363	-	1	NA	NA	NA	6	NM_001256489	66808	Mm.379124	NM_001256489	ENSMUSG00000073158	9030624G23Rik	-	RIKEN cDNA 9030624G23 gene	protein-coding	0.115000	0.736318	
mm_58817.1	chr7	16415573	16415773	+	1	NA	NA	NA	14477	NM_198631	330474	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.010000	0.497512	
mm_13556.1	chr2	112262233	112262433	+	1	NA	NA	NA	407	NM_025403	66181	Mm.272346	NM_025403	ENSMUSG00000027133	Nop10	1110036B12Rik|NOP10P|Nola3	NOP10 ribonucleoprotein	protein-coding	0.020000	0.447761	
mm_77329.1	chr8	119428906	119429106	-	1	NA	NA	NA	-8156	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.010000	0.567164	
mm_21754.1	chr2	164837365	164837565	-	1	NA	NA	NA	3692	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.035000	0.587065	
mm_11747.1	chr2	38354657	38354857	+	1	NA	NA	NA	3449	NM_010710	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.075000	0.636816	
mm_2553.1	chr1	109122516	109122716	+	1	NA	NA	NA	-860284	NM_001316743	241201	Mm.213407	NM_172853	ENSMUSG00000026312	Cdh7	9330156F07Rik|CDH7L1	cadherin 7, type 2	protein-coding	0.005000	0.388060	
mm_155169.1	chrX	53273350	53273550	+	1	NA	NA	NA	17	NM_028671	73866	Mm.84527	NM_028671	ENSMUSG00000036013	Fam122c	4930432H15Rik|4930527G05Rik	family with sequence similarity 122, member C	protein-coding	0.000000	0.437811	
mm_76765.1	chr8	95788652	95788852	-	1	NA	NA	NA	-18078	NR_015574	319960	Mm.386996	NR_015574	ENSMUSG00000074136	4930513N10Rik	-	RIKEN cDNA 4930513N10 gene	ncRNA	0.040000	0.482587	
mm_21043.1	chr2	152539954	152540154	-	1	NA	NA	NA	-13	NM_001001444	75400	Mm.45560	NM_001001444	ENSMUSG00000044249	Defb29	0610030I09Rik|BD-29|mBD-29	defensin beta 29	protein-coding	0.015000	0.532338	
mm_147596.1	chr18	56707338	56707538	-	1	NA	NA	NA	-375	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.115000	0.696517	
mm_137354.1	chr17	25240135	25240335	+	1	NA	NA	NA	65	NM_026676	68327	Mm.180687	NM_026676	ENSMUSG00000015126	Tsr3	0610007P22Rik|1110014B11Rik|AL022759	TSR3 20S rRNA accumulation	protein-coding	0.095000	0.572139	
mm_149035.1	chr19	8819467	8819667	+	1	NA	NA	NA	166	NM_001081196	68693	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0.030000	0.547264	
mm_80783.1	chr9	95857557	95857757	+	1	NA	NA	NA	60	NM_019864	245000	Mm.212462	NM_019864	ENSMUSG00000032409	Atr	-	ataxia telangiectasia and Rad3 related	protein-coding	0.115000	0.691542	
mm_131543.1	chr16	17797216	17797416	+	1	NA	NA	NA	34	NM_153790	224024	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0.150000	0.825871	
mm_67747.1	chr7	90541139	90541339	-	1	NA	NA	NA	-65244	NM_026734	68472	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	0.010000	0.447761	
mm_8793.1	chr1	161788353	161788553	-	1	NA	NA	NA	42	NM_001205243	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.020000	0.467662	51(AACTTTATAAAG,-,0.00),53(CTTTATAAAGAA,+,0.00)
mm_137147.1	chr17	23673843	23674043	+	1	NA	NA	NA	-173	NM_001008425	386612	Mm.328831	NM_001008425	ENSMUSG00000041319	Thoc6	F830014G06Rik|Wdr58	THO complex 6	protein-coding	0.080000	0.651741	
mm_130302.1	chr15	97019797	97019997	-	1	NA	NA	NA	36059	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.050000	0.492537	
mm_152945.1	chr19	28967723	28967923	-	1	NA	NA	NA	-3669	NM_198651	381218	Mm.280653	NM_198651	ENSMUSG00000064202	4430402I18Rik	AW122618|Spata6l	RIKEN cDNA 4430402I18 gene	protein-coding	0.035000	0.601990	-96(GAGCATAAATGC,-,0.00)
mm_98375.1	chr11	94044193	94044393	+	1	NA	NA	NA	88	NM_001025429	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.030000	0.542289	
mm_39940.1	chr5	31746506	31746706	+	1	NA	NA	NA	48556	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.010000	0.253731	
mm_153836.1	chr19	46326471	46326671	-	1	NA	NA	NA	295	NM_001347454	73728	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.075000	0.601990	
mm_169384.1	chr14	41363265	41363465	+	1	NA	NA	NA	-178167	NM_009160	20390	Mm.1321	NM_009160	ENSMUSG00000021795	Sftpd	AI573415|SP-D|Sfpd|Sftp4	surfactant associated protein D	protein-coding	0.000000	0.457711	
mm_53579.1	chr6	137410905	137411105	+	1	NA	NA	NA	284	NM_001164403	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.020000	0.497512	
mm_104254.1	chr11	88924188	88924388	-	1	NA	NA	NA	18360	NR_045955	73921	Mm.439148	NR_045955	ENSMUSG00000087338	Scpep1os	4930405P13Rik	serine carboxypeptidase 1, opposite strand	ncRNA	0.015000	0.467662	
mm_98314.1	chr11	90187574	90187774	+	1	NA	NA	NA	-61802	NM_026178	67468	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.025000	0.467662	
mm_11542.1	chr2	32646507	32646707	+	1	NA	NA	NA	12	NM_001146348	13805	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	0.040000	0.671642	
mm_134613.1	chr16	20803256	20803456	-	1	NA	NA	NA	-68845	NM_009379	21832	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.020000	0.527363	
mm_88405.1	chr10	76721768	76721968	+	1	NA	NA	NA	4176	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.020000	0.542289	
mm_69450.1	chr7	133039613	133039813	-	1	NA	NA	NA	-24466	NM_001170744	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.005000	0.407960	
mm_68000.1	chr7	100932070	100932270	-	1	NA	NA	NA	-9	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.065000	0.671642	
mm_130724.1	chr15	101078807	101079007	-	1	NA	NA	NA	-24508	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.070000	0.726368	
mm_125199.1	chr15	32920988	32921188	+	1	NA	NA	NA	365	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0.060000	0.582090	
mm_40237.1	chr5	37417393	37417593	+	1	NA	NA	NA	79015	NM_145920	68525	Mm.25506	NM_145920	ENSMUSG00000050248	Evc2	1110017L09Rik|Lbn|limbin	Ellis van Creveld syndrome 2	protein-coding	0.020000	0.532338	
mm_148021.1	chr18	68449161	68449361	-	1	NA	NA	NA	-19941	NM_001271716	17200	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	0.010000	0.437811	
mm_39994.1	chr5	32610230	32610430	+	1	NA	NA	NA	-841	NM_001205133	22612	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	0.015000	0.417910	
mm_93703.1	chr10	118103162	118103362	-	1	NA	NA	NA	-38525	NM_001162904	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.040000	0.606965	
mm_1627.1	chr1	74418338	74418538	+	1	NA	NA	NA	9054	NM_009509	22349	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.035000	0.587065	
mm_132296.1	chr16	33381054	33381254	+	1	NA	NA	NA	379	NM_011749	22661	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0.160000	0.840796	
mm_28962.1	chr3	100685363	100685563	-	1	NA	NA	NA	10	NM_010763	17156	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0.125000	0.721393	
mm_14498.1	chr2	132027572	132027772	+	1	NA	NA	NA	2316	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.020000	0.552239	
mm_101843.1	chr11	48808948	48809148	-	1	NA	NA	NA	5909	NR_028564	100216540		NR_028564	ENSMUSG00000064780	Snord95	-	small nucleolar RNA, C/D box 95	snoRNA	0.030000	0.587065	
mm_33520.1	chr4	130930671	130930871	+	1	NA	NA	NA	-13614	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.020000	0.527363	
mm_969.1	chr1	58210350	58210550	+	1	NA	NA	NA	53	NM_023631	71872	Mm.244525	NM_023631	ENSMUSG00000038242	Aox4	2310003G12Rik|Aoh2	aldehyde oxidase 4	protein-coding	0.025000	0.537313	
mm_34488.1	chr4	148558641	148558841	+	1	NA	NA	NA	314	NR_131061	50912	Mm.266635	NM_016699	ENSMUSG00000017264	Exosc10	PM-Scl|PM/Scl-100|Pmscl2|RRP6|p2|p3|p4	exosome component 10	protein-coding	0.140000	0.731343	
mm_86912.1	chr10	22820174	22820374	+	1	NA	NA	NA	-146	NM_011545	21412	Mm.16497	NM_011545	ENSMUSG00000045680	Tcf21	Pod-1|Pod1|bHLHa23|capsulin|epc|epicardin	transcription factor 21	protein-coding	0.025000	0.547264	
mm_45092.1	chr5	44101954	44102154	-	1	NA	NA	NA	-318	NM_001163577	19126	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.025000	0.532338	
mm_37076.1	chr4	116167471	116167671	-	1	NA	NA	NA	27	NM_133681	66805	Mm.45994	NM_133681	ENSMUSG00000028699	Tspan1	9030418M05Rik	tetraspanin 1	protein-coding	0.035000	0.582090	-60(GTTTTAAAACAC,+,0.00)
mm_22742.1	chr3	19956955	19957155	+	1	NA	NA	NA	1	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.015000	0.437811	
mm_141596.1	chr17	32424085	32424285	-	1	NA	NA	NA	-18	NM_001271478	57757	Mm.86752	NM_021319	ENSMUSG00000079563	Pglyrp2	C730002N09Rik|PGRP-L|Pglyrpl|tagL	peptidoglycan recognition protein 2	protein-coding	0.010000	0.537313	
mm_108396.1	chr12	81026709	81026909	+	1	NA	NA	NA	1	NM_022316	64075	Mm.273295	NM_022316	ENSMUSG00000021136	Smoc1	2600002F22Rik|AI848508|SRG	SPARC related modular calcium binding 1	protein-coding	0.115000	0.711443	
mm_80952.1	chr9	102988673	102988873	+	1	NA	NA	NA	-19716	NM_033314	24059	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	0.025000	0.577114	
mm_56084.1	chr6	87335405	87335605	-	1	NA	NA	NA	270	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.105000	0.681592	
mm_140055.1	chr17	74570509	74570709	+	1	NA	NA	NA	42314	NM_007566	12211	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.005000	0.303483	
mm_72190.1	chr8	72492144	72492344	+	1	NA	NA	NA	370	NM_177766	270066	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	0.155000	0.706468	
mm_58898.1	chr7	17150150	17150350	+	1	NA	NA	NA	-150	NM_054059	384557	Mm.486145	NM_054059	ENSMUSG00000053228	Ceacam3	EG384557|Psg24|cea12	carcinoembryonic antigen-related cell adhesion molecule 3	protein-coding	0.000000	0.557214	
mm_87944.1	chr10	62920614	62920814	+	1	NA	NA	NA	81	NM_175194	73132	Mm.37457	NM_175194	ENSMUSG00000071253	Slc25a16	3110021G18Rik|GDA|GDC|HGT.1|ML7	solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	protein-coding	0.125000	0.756219	
mm_54326.1	chr6	30509620	30509820	-	1	NA	NA	NA	53	NM_001347087	72649	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	0.075000	0.626866	
mm_144908.1	chr18	37411613	37411813	+	1	NA	NA	NA	39	NM_053135	93881	Mm.115996	NM_053135	ENSMUSG00000045657	Pcdhb10	Pcdhb5D|PcdhbJ	protocadherin beta 10	protein-coding	0.030000	0.422886	
mm_130237.1	chr15	96474646	96474846	-	1	NA	NA	NA	-13903	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.030000	0.547264	
mm_103844.1	chr11	83064814	83065014	-	1	NA	NA	NA	-198	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.010000	0.507463	-7(GCCTTTAGAGTC,+,0.00)
mm_102139.1	chr11	53480132	53480332	-	1	NA	NA	NA	-37	NM_183173	237761	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	0.060000	0.601990	
mm_73999.1	chr8	120744707	120744907	+	1	NA	NA	NA	6168	NM_001301811	15900	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.000000	0.557214	
mm_152675.1	chr19	15194133	15194333	-	1	NA	NA	NA	-596050	NM_001302947	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.035000	0.497512	
mm_9405.1	chr1	172274058	172274258	-	1	NA	NA	NA	-15734	NM_013734	27222	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	0.005000	0.532338	-72(GGCCAGAAAAGG,-,0.00)
mm_70889.1	chr8	25554965	25555165	+	1	NA	NA	NA	1018	NR_110510	102633315	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	OTTMUSG00000031030	predicted gene 16159	ncRNA	0.025000	0.582090	
mm_43791.1	chr5	142692392	142692592	+	1	NA	NA	NA	-9609	NM_146257	243328	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.040000	0.547264	
mm_115071.1	chr13	101545071	101545271	+	1	NA	NA	NA	147459	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.005000	0.477612	
mm_36232.1	chr4	63152558	63152758	-	1	NA	NA	NA	1514	NM_007443	11699	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.040000	0.552239	
mm_119207.1	chr14	32856807	32857007	+	1	NA	NA	NA	151	NM_178791	320736	Mm.187910	NM_178791	ENSMUSG00000050666	Vstm4	E130203B14Rik	V-set and transmembrane domain containing 4	protein-coding	0.165000	0.830846	
mm_134227.1	chr16	11288205	11288405	-	1	NA	NA	NA	-25504	NM_011608	21935	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	0.010000	0.477612	
mm_40913.1	chr5	75627331	75627531	+	1	NA	NA	NA	52440	NM_021099	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	KIT proto-oncogene receptor tyrosine kinase	protein-coding	0.000000	0.308458	
mm_14462.1	chr2	131210427	131210627	+	1	NA	NA	NA	167	NR_110992	69596	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0.020000	0.517413	
mm_140739.1	chr17	15826400	15826600	-	1	NA	NA	NA	86	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.105000	0.671642	
mm_101177.1	chr11	16995149	16995349	-	1	NA	NA	NA	13469	NM_019549	56193	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.010000	0.447761	
mm_117216.1	chr13	64089385	64089585	-	1	NA	NA	NA	-284	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.010000	0.522388	-22(GGCTTTTAATGC,-,0.00)
mm_97957.1	chr11	83711141	83711341	+	1	NA	NA	NA	2237	NM_007969	14038	Mm.1650	NM_007969	ENSMUSG00000000983	Wfdc18	Expi|Kal1|WDNM1	WAP four-disulfide core domain 18	protein-coding	0.005000	0.427861	-70(ATCTTTATAAGC,-,0.00)
mm_83358.1	chr9	44406957	44407157	-	1	NA	NA	NA	491	NM_021789	60409	Mm.29814	NM_021789	ENSMUSG00000032112	Trappc4	1500017G03Rik|AI303617|HSPC172|PTD009|Sbd|Sbdn|Sdcbp2|TRS23	trafficking protein particle complex 4	protein-coding	0.075000	0.671642	
mm_129666.1	chr15	81251761	81251961	-	1	NA	NA	NA	1	NR_077230	78102	Mm.296832	NR_077229		8430426J06Rik	-	RIKEN cDNA 8430426J06 gene	ncRNA	0.035000	0.477612	-44(GACTATAAGAGG,-,0.00)
mm_110158.1	chr12	26469058	26469258	-	1	NA	NA	NA	-57	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.040000	0.606965	
mm_167835.1	chr9	124424383	124424583	-	1	NA	NA	NA	696	NR_015516	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.110000	0.577114	
mm_77285.1	chr8	116733239	116733439	-	1	NA	NA	NA	-348	NM_029441	75796	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.165000	0.845771	
mm_37125.1	chr4	116679229	116679429	-	1	NA	NA	NA	-6270	NM_011034	18477	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0.020000	0.472637	
mm_35449.1	chr4	40268405	40268605	-	1	NA	NA	NA	-1074	NR_045265	100504309	Mm.392019	NR_045265		Toporsos	2010003O02Rik	topoisomerase I binding, arginine/serine-rich, opposite strand	ncRNA	0.100000	0.691542	
mm_81026.1	chr9	104566639	104566839	+	1	NA	NA	NA	-3049	NM_028719	74020	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	0.015000	0.527363	
mm_134678.1	chr16	22411707	22411907	-	1	NA	NA	NA	27763	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.020000	0.592040	
mm_146309.1	chr18	80264356	80264556	+	1	NA	NA	NA	8150	NM_001164423	66943	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.005000	0.393035	-48(GCCTTTAAACTC,+,0.00)
mm_85067.1	chr9	91085745	91085945	-	1	NA	NA	NA	279954	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.015000	0.517413	
mm_27382.1	chr3	50607080	50607280	-	1	NA	NA	NA	-163567	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.502488	
mm_31434.1	chr4	48539817	48540017	+	1	NA	NA	NA	-29	NM_001145925	66665	Mm.140749	NM_028137	ENSMUSG00000039693	Msantd3	2410046L14Rik|2810429P03Rik|5730528L13Rik|Mysantd3	Myb/SANT-like DNA-binding domain containing 3	protein-coding	0.065000	0.616915	
mm_50920.1	chr6	57605609	57605809	+	1	NA	NA	NA	24717	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.000000	0.487562	
mm_65362.1	chr7	25005811	25006011	-	1	NA	NA	NA	26	NM_001290469	232975	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.125000	0.756219	-36(GGGCATATGAGG,-,0.00)
mm_58277.1	chr6	145614184	145614384	-	1	NA	NA	NA	-1679	NM_009449	22147	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0.030000	0.512438	
mm_1479.1	chr1	71557061	71557261	+	1	NA	NA	NA	5	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.095000	0.716418	
mm_107144.1	chr12	21496416	21496616	+	1	NA	NA	NA	-79080	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.015000	0.497512	
mm_101582.1	chr11	34407028	34407228	-	1	NA	NA	NA	92306	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.015000	0.427861	
mm_161825.1	chr17	78906796	78906996	-	1	NA	NA	NA	96	NM_001163625	73671	Mm.45514	NM_001163625	ENSMUSG00000038045	Sult6b1	2410078J06Rik|AV101767|ST6B1	sulfotransferase family, cytosolic, 6B, member 1	protein-coding	0.025000	0.457711	
mm_144807.1	chr18	36281385	36281585	+	1	NA	NA	NA	323	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.140000	0.766169	
mm_35780.1	chr4	46404235	46404435	-	1	NA	NA	NA	-152	NM_053149	93966	Mm.25793	NM_053149	ENSMUSG00000028332	Hemgn	4921524M03Rik|AI317176|EDAG|Hgn|mNDR	hemogen	protein-coding	0.015000	0.542289	
mm_108589.1	chr12	85339339	85339539	+	1	NA	NA	NA	-77	NM_145138	217718	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.095000	0.641791	
mm_45594.1	chr5	74702803	74703003	-	1	NA	NA	NA	0	NM_001159577	16924	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.025000	0.542289	
mm_54311.1	chr6	30147001	30147201	-	1	NA	NA	NA	18891	NR_029569	387177		NR_029569	ENSMUSG00000076361	Mir182	Mirn182|mir-182|mmu-mir-182	microRNA 182	ncRNA	0.010000	0.487562	
mm_52059.1	chr6	97252789	97252989	+	1	NA	NA	NA	-109	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.015000	0.502488	
mm_145823.1	chr18	65435194	65435394	+	1	NA	NA	NA	4297	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.358209	
mm_97678.1	chr11	79974126	79974326	+	1	NA	NA	NA	-11839	NM_144826	216987	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.050000	0.616915	
mm_123939.1	chr14	73368335	73368535	-	1	NA	NA	NA	16836	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.035000	0.512438	
mm_94970.1	chr11	30954314	30954514	+	1	NA	NA	NA	16	NM_023906	65257	Mm.440539	NM_023906	ENSMUSG00000020305	Asb3	2400011J03Rik|Asb-3	ankyrin repeat and SOCS box-containing 3	protein-coding	0.090000	0.651741	
mm_14386.1	chr2	129800189	129800389	+	1	NA	NA	NA	-228	NM_183262	67333	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	0.060000	0.542289	
mm_101196.1	chr11	18891091	18891291	-	1	NA	NA	NA	127778	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.010000	0.457711	
mm_122083.1	chr14	30616756	30616956	-	1	NA	NA	NA	-6546	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.010000	0.597015	
mm_136202.1	chr16	89818247	89818447	-	1	NA	NA	NA	5	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.035000	0.572139	
mm_52359.1	chr6	112488961	112489161	+	1	NA	NA	NA	747	NM_001081147	18430	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding	0.075000	0.597015	
mm_19297.1	chr2	90460799	90460999	-	1	NA	NA	NA	18275	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.005000	0.383085	
mm_74794.1	chr8	22398255	22398455	-	1	NA	NA	NA	266	NM_181325	18408	Mm.200907	NM_181325	ENSMUSG00000031482	Slc25a15	D630044L02Rik|Ornt1	solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15	protein-coding	0.180000	0.810945	
mm_101073.1	chr11	11565213	11565413	-	1	NA	NA	NA	62525	NM_001305143	102631730	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	0.010000	0.537313	-32(CTTTATATACCA,+,0.00)
mm_21128.1	chr2	154094735	154094935	-	1	NA	NA	NA	-35501	NM_001291079	73388	Mm.71904	NM_028528	ENSMUSG00000027482	Bpifa3	1700058C13Rik|Splunc3	BPI fold containing family A, member 3	protein-coding	0.030000	0.507463	
mm_65418.1	chr7	25250629	25250829	-	1	NA	NA	NA	29	NM_010155	13875	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.165000	0.786070	
mm_125295.1	chr15	37007469	37007669	+	1	NA	NA	NA	-167	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.100000	0.691542	
mm_13505.1	chr2	109280690	109280890	+	1	NA	NA	NA	52	NM_139303	228421	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	0.055000	0.557214	
mm_12772.1	chr2	79326674	79326874	+	1	NA	NA	NA	71348	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.015000	0.422886	
mm_75257.1	chr8	40584602	40584802	-	1	NA	NA	NA	50090	NM_001040699	54384	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.010000	0.437811	
mm_79312.1	chr9	52060733	52060933	+	1	NA	NA	NA	-12128	NR_023357	629557	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.005000	0.358209	
mm_67541.1	chr7	81455395	81455595	-	1	NA	NA	NA	-737	NM_001252526	12877	Mm.273122	NM_007755	ENSMUSG00000025586	Cpeb1	AU024112|Cpeb|mCPEB	cytoplasmic polyadenylation element binding protein 1	protein-coding	0.055000	0.597015	
mm_20901.1	chr2	149798623	149798823	-	1	NA	NA	NA	-32060	NM_001085521	433485	Mm.330649	NM_001085521	ENSMUSG00000074736	Syndig1	AW123113|DSPC2|Gm14134|H2C20orf39|OTTMUSG00000015750|Tmem90b	synapse differentiation inducing 1	protein-coding	0.005000	0.462687	
mm_18783.1	chr2	73659785	73659985	-	1	NA	NA	NA	538	NM_175752	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	0.020000	0.482587	
mm_124398.1	chr14	114842437	114842637	-	1	NA	NA	NA	10572	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0.025000	0.492537	
mm_46857.1	chr5	113771551	113771751	-	1	NA	NA	NA	-2	NM_016926	53890	Mm.29594	NM_016926	ENSMUSG00000018974	Sart3	AU045857|mKIAA0156	squamous cell carcinoma antigen recognized by T cells 3	protein-coding	0.140000	0.716418	
mm_123326.1	chr14	62966118	62966318	-	1	NA	NA	NA	18292	NM_001037751	432867	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0.005000	0.532338	
mm_82852.1	chr9	31279799	31279999	-	1	NA	NA	NA	8498	NM_001101597	638580	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.045000	0.552239	
mm_144608.1	chr18	32430816	32431016	+	1	NA	NA	NA	-52632	NR_045403	402767	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.035000	0.631841	
mm_17176.1	chr2	25332463	25332663	-	1	NA	NA	NA	8	NR_027448	100272219	Mm.382103	NR_027448	ENSMUSG00000097345	AA543186	-	expressed sequence AA543186	ncRNA	0.090000	0.572139	
mm_91178.1	chr10	20725033	20725233	-	1	NA	NA	NA	-55	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.030000	0.517413	
mm_72976.1	chr8	92901275	92901475	+	1	NA	NA	NA	-20	NM_027112	69543	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	0.010000	0.497512	
mm_130532.1	chr15	98934341	98934541	-	1	NA	NA	NA	-51	NM_011654	22143	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.110000	0.666667	
mm_102265.1	chr11	55336554	55336754	-	1	NA	NA	NA	-24397	NM_001029988	245827	Mm.339363	NM_001029988	ENSMUSG00000055333	Fat2	EMI2|Fath2|Gm523|mKIAA0811	FAT atypical cadherin 2	protein-coding	0.020000	0.606965	
mm_19492.1	chr2	93334420	93334620	-	1	NA	NA	NA	-33	NM_183180	241556	Mm.274159	NM_183180	ENSMUSG00000027217	Tspan18	2610042G18Rik|6720430O15|BB226562	tetraspanin 18	protein-coding	0.125000	0.771144	
mm_131431.1	chr16	15705137	15705337	+	1	NA	NA	NA	67371	NM_011159	19090	Mm.71	NM_011159	ENSMUSG00000022672	Prkdc	AI326420|AU019811|DNA-PKcs|DNAPDcs|DNAPK|DNPK1|DOXNPH|HYRC1|XRCC7|dxnph|p460|scid|slip	protein kinase, DNA activated, catalytic polypeptide	protein-coding	0.010000	0.388060	
mm_7313.1	chr1	98095420	98095620	-	1	NA	NA	NA	112	NM_013626	18484	Mm.5121	NM_013626	ENSMUSG00000026335	Pam	PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding	0.150000	0.786070	
mm_66833.1	chr7	48866833	48867033	-	1	NA	NA	NA	14108	NM_001013368	108961	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.015000	0.383085	
mm_85459.1	chr9	105428191	105428391	-	1	NA	NA	NA	27503	NM_001164828	66595	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1 (Drosophila)	protein-coding	0.010000	0.298507	
mm_77842.1	chr9	5299199	5299399	+	1	NA	NA	NA	782	NM_009807	12362	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.005000	0.363184	
mm_57127.1	chr6	122600431	122600631	-	1	NA	NA	NA	1913	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.015000	0.457711	
mm_23368.1	chr3	55371897	55372097	+	1	NA	NA	NA	-89761	NM_001195539	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.015000	0.547264	
mm_13013.1	chr2	90940395	90940595	+	1	NA	NA	NA	98	NM_017368	13046	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	0.150000	0.781095	
mm_152971.1	chr19	29386709	29386909	-	1	NA	NA	NA	19371	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.000000	0.452736	
mm_160296.1	chr7	132316648	132316848	-	1	NA	NA	NA	407	NM_029935	77590	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.095000	0.701493	
mm_121366.1	chr14	117370824	117371024	+	1	NA	NA	NA	445627	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.010000	0.462687	
mm_137189.1	chr17	23820986	23821186	+	1	NA	NA	NA	8023	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.010000	0.542289	
mm_61440.1	chr7	75455542	75455742	+	1	NA	NA	NA	108	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.120000	0.736318	
mm_90583.1	chr10	128268760	128268960	+	1	NA	NA	NA	863	NM_133997	103161	Mm.26513	NM_133997	ENSMUSG00000047631	Apof	AI255964	apolipoprotein F	protein-coding	0.000000	0.477612	
mm_144096.1	chr18	3382922	3383122	+	1	NA	NA	NA	-203	NM_029402	71745	Mm.291707	NM_029402	ENSMUSG00000024231	Cul2	1300003D18Rik|4932411N15Rik|AI327301|mKIAA4106	cullin 2	protein-coding	0.060000	0.626866	
mm_731.1	chr1	43197025	43197225	+	1	NA	NA	NA	-364	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.020000	0.547264	
mm_122064.1	chr14	30469778	30469978	-	1	NA	NA	NA	-9687	NM_133761	75901	Mm.28733	NM_133761	ENSMUSG00000021962	Dcp1a	1110066A22Rik|4930568L04Rik|AU019772|D14Ertd817e|Mitc1|SMIF	decapping mRNA 1A	protein-coding	0.030000	0.447761	
mm_12764.1	chr2	79256071	79256271	+	1	NA	NA	NA	745	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.030000	0.567164	
mm_99977.1	chr11	114091395	114091595	+	1	NA	NA	NA	-25544	NM_172800	237979	Mm.130504	NM_172800	ENSMUSG00000041592	Sdk2	4632412F08Rik|5330435L01Rik|Sdk-2|mKIAA1514	sidekick cell adhesion molecule 2	protein-coding	0.010000	0.497512	
mm_6824.1	chr1	84200246	84200446	-	1	NA	NA	NA	18615	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.328358	-20(TCCTCTAAAAGG,-,0.00)
mm_81040.1	chr9	105395227	105395427	+	1	NA	NA	NA	-40	NM_172461	208583	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding	0.120000	0.661692	
mm_135501.1	chr16	46496776	46496976	-	1	NA	NA	NA	91	NM_021496	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.190000	0.825871	
mm_165723.1	chr3	102935154	102935354	-	1	NA	NA	NA	846	NM_011516	20957	Mm.243849	NM_011516	ENSMUSG00000027855	Sycp1	SCP1	synaptonemal complex protein 1	protein-coding	0.015000	0.343284	41(CTTTTTAGACTC,+,0.00)
mm_32878.1	chr4	118621126	118621326	+	1	NA	NA	NA	427	NM_026932	69072	Mm.29906	NM_026932	ENSMUSG00000028729	Ebna1bp2	1810014B19Rik|AA537058|B830003A16Rik|C81321|Ebp2|Nobp|p40	EBNA1 binding protein 2	protein-coding	0.070000	0.567164	
mm_18074.1	chr2	42652915	42653115	-	1	NA	NA	NA	583	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding	0.070000	0.606965	
mm_167279.1	chr8	35400417	35400617	-	1	NA	NA	NA	24776	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.030000	0.492537	
mm_28521.1	chr3	92588867	92589067	-	1	NA	NA	NA	57	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.005000	0.442786	
mm_78393.1	chr9	28781088	28781288	+	1	NA	NA	NA	989919	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.010000	0.363184	
mm_127205.1	chr15	99212424	99212624	+	1	NA	NA	NA	-12452	NM_010601	16512	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0.005000	0.343284	
mm_19988.1	chr2	118549576	118549776	-	1	NA	NA	NA	10	NM_138313	171543	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.075000	0.626866	
mm_94079.1	chr10	128492809	128493009	-	1	NA	NA	NA	100	NM_001317220	17904	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.005000	0.462687	
mm_12258.1	chr2	68936164	68936364	+	1	NA	NA	NA	74823	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.000000	0.492537	
mm_144518.1	chr18	24746526	24746726	+	1	NA	NA	NA	38003	NM_001289655	225288	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0.015000	0.487562	
mm_161468.1	chr15	78718010	78718210	-	1	NA	NA	NA	3	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0.070000	0.641791	
mm_34731.1	chr4	152185901	152186101	+	1	NA	NA	NA	-133	NM_001146057	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.035000	0.582090	
mm_145214.1	chr18	50038734	50038934	+	1	NA	NA	NA	-14448	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.010000	0.378109	22(CACTTTTTAGGG,-,0.00),24(CTTTTTAGGGAA,+,0.00)
mm_121633.1	chr14	8367189	8367389	-	1	NA	NA	NA	11474	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.005000	0.462687	
mm_34089.1	chr4	138832843	138833043	+	1	NA	NA	NA	1067	NM_001082531	18780	Mm.4675	NM_011108	ENSMUSG00000058908	Pla2g2a	EF|Mom1|Pla2|sPLA2|sPla2-IIA	phospholipase A2, group IIA (platelets, synovial fluid)	protein-coding	0.010000	0.517413	
mm_68910.1	chr7	126457884	126458084	-	1	NA	NA	NA	5089	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.015000	0.547264	
mm_31967.1	chr4	87718348	87718548	+	1	NA	NA	NA	87875	NM_001286158	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.020000	0.437811	
mm_80415.1	chr9	77784598	77784798	+	1	NA	NA	NA	30163	NM_010295	14629	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.010000	0.452736	
mm_159798.1	chr5	112355937	112356137	-	1	NA	NA	NA	-4	NM_001039228	625424	Mm.389677	NM_001039228	ENSMUSG00000051503	Gm6583	EG625424	predicted gene 6583	protein-coding	0.040000	0.611940	
mm_25244.1	chr3	103919528	103919728	+	1	NA	NA	NA	5508	NM_172684	229675	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0.000000	0.273632	
mm_120755.1	chr14	73362804	73363004	+	1	NA	NA	NA	22367	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.005000	0.308458	
mm_126506.1	chr15	81802591	81802791	+	1	NA	NA	NA	18	NM_153484	21685	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.035000	0.686567	
mm_87447.1	chr10	51481649	51481849	+	1	NA	NA	NA	1137	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.005000	0.467662	
mm_105022.1	chr11	100441731	100441931	-	1	NA	NA	NA	-93	NM_025727	66720	Mm.34168	NM_025727	ENSMUSG00000001558	Klhl10	4921517C11Rik	kelch-like 10	protein-coding	0.005000	0.532338	
mm_65314.1	chr7	24850989	24851189	-	1	NA	NA	NA	18602	NM_182785	232973	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	0.010000	0.547264	81(TGCTTTTAGAGG,-,0.00),82(GCTTTTAGAGGA,+,0.00)
mm_111304.1	chr12	85705555	85705755	-	1	NA	NA	NA	18935	NM_016767	53314	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.055000	0.656716	
mm_69647.1	chr7	139188399	139188599	-	1	NA	NA	NA	-5	NM_021302	57740	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	0.110000	0.726368	
mm_90653.1	chr10	128748667	128748867	+	1	NA	NA	NA	312	NM_001253704	78428	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	0.045000	0.592040	
mm_106329.1	chr11	118318771	118318971	-	1	NA	NA	NA	23663	NM_021440	58251	Mm.439815	NM_021440	ENSMUSG00000076433	BC100451	Cep295nl|Ddc8|FS39|Kiaa1731nl	cDNA sequence BC100451	protein-coding	0.010000	0.532338	
mm_5434.1	chr1	34819662	34819862	-	1	NA	NA	NA	18040	NM_183019	226970	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef|ENSMUSG00000070955	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0.015000	0.592040	
mm_115943.1	chr13	23704229	23704429	-	1	NA	NA	NA	-5871	NM_178208	319155	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	0.005000	0.487562	
mm_132052.1	chr16	29579205	29579405	+	1	NA	NA	NA	-29	NM_133752	74143	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	0.075000	0.616915	
mm_98576.1	chr11	95712790	95712990	+	1	NA	NA	NA	-136	NR_045780	432396	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	0.175000	0.830846	
mm_114777.1	chr13	88821656	88821856	+	1	NA	NA	NA	284	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.065000	0.651741	
mm_135524.1	chr16	48993840	48994040	-	1	NA	NA	NA	172	NM_001110017	224170	Mm.275138	NM_027341	ENSMUSG00000064061	Dzip3	2310047C04Rik|2A-HUB|6430549P11Rik|A230104G20	DAZ interacting protein 3, zinc finger	protein-coding	0.150000	0.736318	
mm_5776.1	chr1	51478027	51478227	-	1	NA	NA	NA	272	NM_028696	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.055000	0.517413	
mm_117173.1	chr13	63113000	63113200	-	1	NA	NA	NA	-126929	NR_110520	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.005000	0.452736	
mm_160064.1	chr7	5014170	5014370	-	1	NA	NA	NA	-17	NM_011813	23877	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	0.030000	0.527363	29(GTTTATATAAAG,-,0.00)
mm_36260.1	chr4	63452590	63452790	-	1	NA	NA	NA	43301	NM_001008793	73750	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0.005000	0.388060	
mm_60393.1	chr7	44474975	44475175	+	1	NA	NA	NA	4728	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.015000	0.537313	
mm_55642.1	chr6	72345075	72345275	-	1	NA	NA	NA	0	NM_138592	28035	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	0.105000	0.631841	
mm_101178.1	chr11	16995219	16995419	-	1	NA	NA	NA	13399	NM_019549	56193	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.005000	0.412935	
mm_81004.1	chr9	103426574	103426774	+	1	NA	NA	NA	3096	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.040000	0.626866	
mm_52810.1	chr6	121343216	121343416	+	1	NA	NA	NA	240	NM_001347433	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.015000	0.592040	
mm_13671.1	chr2	115581709	115581909	+	1	NA	NA	NA	93	NM_001145898	399568	Mm.134929	NM_207264	ENSMUSG00000040282	BC052040	-	cDNA sequence BC052040	protein-coding	0.055000	0.601990	
mm_107204.1	chr12	26443647	26443847	+	1	NA	NA	NA	12705	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.005000	0.412935	
mm_157946.1	chrX	86354870	86355070	-	1	NA	NA	NA	24	NR_036689	245502	Mm.490821	NR_036689		Gm41	-	melanoma antigen, family B, 4 pseudogene	pseudo	0.020000	0.537313	
mm_66167.1	chr7	33739213	33739413	-	1	NA	NA	NA	-18	NM_177446	233090	Mm.261648	NM_177446	ENSMUSG00000046438	Scgb2b24	Abpbg24|Abpz|C2b|Scgb2b3	secretoglobin, family 2B, member 24	protein-coding	0.005000	0.512438	-30(TGGTTTATAGGG,-,0.00)
mm_102463.1	chr11	59947990	59948190	-	1	NA	NA	NA	57	NR_045273	100504121	Mm.383770	NR_045273	ENSMUSG00000085260	Med9os	1700013G23Rik	mediator complex subunit 9, opposite strand	ncRNA	0.065000	0.557214	
mm_91622.1	chr10	41746293	41746493	-	1	NA	NA	NA	63270	NM_001243075	103268	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	0.005000	0.422886	
mm_69138.1	chr7	127050161	127050361	-	1	NA	NA	NA	1716	NM_026918	69036	Mm.21835	NM_026918	ENSMUSG00000049350	Zg16	1810010M01Rik|AI593689|ZG16p	zymogen granule protein 16	protein-coding	0.005000	0.482587	
mm_62540.1	chr7	102268057	102268257	+	1	NA	NA	NA	333	NM_009287	20866	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0.080000	0.676617	
mm_67384.1	chr7	79842249	79842449	-	1	NA	NA	NA	3	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.030000	0.577114	
mm_20744.1	chr2	140042027	140042227	-	1	NA	NA	NA	24678	NM_001159640	75812	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0.010000	0.407960	
mm_23858.1	chr3	83010400	83010600	+	1	NA	NA	NA	2776	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.030000	0.452736	
mm_110392.1	chr12	41485852	41486052	-	1	NA	NA	NA	105	NM_001271708	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.040000	0.527363	
mm_52583.1	chr6	116650582	116650782	+	1	NA	NA	NA	-2	NM_145980	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.030000	0.547264	
mm_80640.1	chr9	89248457	89248657	+	1	NA	NA	NA	37367	NM_026829	107885	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.000000	0.507463	
mm_57741.1	chr6	129047370	129047570	-	1	NA	NA	NA	1569	NR_024263	232408	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.005000	0.422886	
mm_153987.1	chr19	47919187	47919387	-	1	NA	NA	NA	12	NM_001001738	414801	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER|mKIAA1754	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	0.080000	0.601990	-68(CGCCAGTAAAGG,-,0.00),-46(GTTCTTATAAGG,-,0.00),-44(TCTTATAAGGAG,+,0.00)
mm_56096.1	chr6	87388785	87388985	-	1	NA	NA	NA	50	NM_026860	68888	Mm.46387	NM_026860	ENSMUSG00000030048	Gkn3	1190003M12Rik	gastrokine 3	protein-coding	0.030000	0.432836	-4(GTCTATATAAAC,-,0.00)
mm_158596.1	chrX	151096420	151096620	-	1	NA	NA	NA	23	NM_001164578	69499	Mm.8142	NM_175146	ENSMUSG00000025264	Tsr2	2310007F12Rik	TSR2 20S rRNA accumulation	protein-coding	0.065000	0.572139	
mm_79669.1	chr9	59668813	59669013	+	1	NA	NA	NA	12545	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.025000	0.532338	
mm_157846.1	chrX	74393043	74393243	-	1	NA	NA	NA	131	NM_025473	66294	Mm.166485	NM_025473	ENSMUSG00000031399	Fam3a	1810037C20Rik	family with sequence similarity 3, member A	protein-coding	0.060000	0.606965	
mm_157754.1	chrX	73494637	73494837	-	1	NA	NA	NA	-8349	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.020000	0.527363	
mm_83799.1	chr9	52679659	52679859	-	1	NA	NA	NA	21	NM_001286641	330941	Mm.335160	NM_177907	ENSMUSG00000078307	AI593442	E130102D23	expressed sequence AI593442	protein-coding	0.080000	0.716418	
mm_90188.1	chr10	120169313	120169513	+	1	NA	NA	NA	32124	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.030000	0.517413	60(GTTTTTAAAAGC,+,0.00),60(GTTTTTAAAAGC,-,0.00)
mm_1706.1	chr1	75236315	75236515	+	1	NA	NA	NA	-8	NM_020266	56812	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.090000	0.666667	
mm_132324.1	chr16	33794048	33794248	+	1	NA	NA	NA	111	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.015000	0.477612	
mm_19691.1	chr2	103485003	103485203	-	1	NA	NA	NA	50	NM_009804	12359	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0.070000	0.656716	
mm_976.1	chr1	58393377	58393577	+	1	NA	NA	NA	341	NM_025824	66882	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.180000	0.810945	
mm_61257.1	chr7	66060463	66060663	+	1	NA	NA	NA	227	NM_021336	68981	Mm.22362	NM_021336	ENSMUSG00000030512	Snrpa1	1500015N06Rik	small nuclear ribonucleoprotein polypeptide A'	protein-coding	0.115000	0.666667	
mm_102759.1	chr11	67581838	67582038	-	1	NA	NA	NA	-4562	NM_001109657	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.010000	0.477612	
mm_40073.1	chr5	34336330	34336530	+	1	NA	NA	NA	50	NM_001304269	19822	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0.090000	0.626866	
mm_168330.1	chr11	117086689	117086889	+	1	NA	NA	NA	9441	NR_105853	102465258		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.015000	0.507463	
mm_8186.1	chr1	138090373	138090573	-	1	NA	NA	NA	84653	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.005000	0.278607	
mm_81177.1	chr9	107334665	107334865	+	1	NA	NA	NA	3585	NM_133984	69536	Mm.259467	NM_133984	ENSMUSG00000032579	Hemk1	2310008M14Rik|AW049265	HemK methyltransferase family member 1	protein-coding	0.005000	0.567164	
mm_144404.1	chr18	20944516	20944716	+	1	NA	NA	NA	-9	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.025000	0.577114	
mm_24420.1	chr3	90526771	90526971	+	1	NA	NA	NA	22	NM_001163526	66166	Mm.24006	NM_025393	ENSMUSG00000042306	S100a14	1110013O05Rik|S100a15|S114	S100 calcium binding protein A14	protein-coding	0.010000	0.621891	
mm_59560.1	chr7	28085319	28085519	+	1	NA	NA	NA	14183	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.020000	0.562189	
mm_22063.1	chr2	168669995	168670195	-	1	NA	NA	NA	-29336	NR_105971	102466784		NR_105971	ENSMUSG00000105496	Mir7004	mmu-mir-7004	microRNA 7004	ncRNA	0.040000	0.611940	
mm_39252.1	chr5	3502720	3502920	+	1	NA	NA	NA	-41013	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.015000	0.522388	
mm_101520.1	chr11	32614589	32614789	-	1	NA	NA	NA	-27866	NM_001271348	103583	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.120000	0.656716	
mm_151502.1	chr19	58729797	58729997	+	1	NA	NA	NA	1010	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.005000	0.552239	
mm_46240.1	chr5	99223499	99223699	-	1	NA	NA	NA	29328	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.015000	0.462687	
mm_121787.1	chr14	19977041	19977241	-	1	NA	NA	NA	108	NM_001038637	14702	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.030000	0.656716	
mm_29304.1	chr3	107943240	107943440	-	1	NA	NA	NA	409	NM_008184	14867	Mm.458154	NM_008184	ENSMUSG00000068762	Gstm6	-	glutathione S-transferase, mu 6	protein-coding	0.035000	0.527363	
mm_8928.1	chr1	164062903	164063103	-	1	NA	NA	NA	927	NM_001164059	20343	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.010000	0.467662	
mm_3382.1	chr1	139491409	139491609	+	1	NA	NA	NA	-10198	NM_031164	14060	Mm.30105	NM_031164	ENSMUSG00000026368	F13b	Cf-13b|Cf13b	coagulation factor XIII, beta subunit	protein-coding	0.055000	0.507463	-46(CTGTTTAAAGGC,-,0.00)
mm_67745.1	chr7	90457090	90457290	-	1	NA	NA	NA	18	NM_025460	66271	Mm.28963	NM_025460	ENSMUSG00000030615	Tmem126a	1810020E01Rik	transmembrane protein 126A	protein-coding	0.085000	0.631841	
mm_88277.1	chr10	75060490	75060690	+	1	NA	NA	NA	-306	NM_001081412	110279	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.155000	0.791045	-83(GCCCCTTTAAGA,-,0.00),-81(CCCTTTAAGAGG,-,0.00),-80(CCTTTAAGAGGC,+,0.00)
mm_118269.1	chr13	112591164	112591364	-	1	NA	NA	NA	-10602	NM_139299	218624	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	0.020000	0.606965	
mm_9796.1	chr1	181842259	181842459	-	1	NA	NA	NA	42	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.145000	0.736318	
mm_80639.1	chr9	89248443	89248643	+	1	NA	NA	NA	37353	NM_026829	107885	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.000000	0.527363	
mm_130300.1	chr15	97019744	97019944	-	1	NA	NA	NA	36112	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.045000	0.527363	
mm_129944.1	chr15	84948932	84949132	-	1	NA	NA	NA	2591	NR_037206	100526461		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0.040000	0.646766	
mm_75007.1	chr8	27250746	27250946	-	1	NA	NA	NA	-9481	NM_007918	13685	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0.020000	0.467662	
mm_35218.1	chr4	19651899	19652099	-	1	NA	NA	NA	57005	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.000000	0.318408	
mm_14290.1	chr2	128820608	128820808	+	1	NA	NA	NA	2405	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.000000	0.462687	-26(GGACTTATAAGG,-,0.00)
mm_139223.1	chr17	47730502	47730702	+	1	NA	NA	NA	3760	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.015000	0.552239	
mm_122857.1	chr14	54877055	54877255	-	1	NA	NA	NA	383	NM_001167908	105651	Mm.297365	NM_001167908	ENSMUSG00000072494	Ppp1r3e	A630071A11Rik|AW049239|Gm1211	protein phosphatase 1, regulatory (inhibitor) subunit 3E	protein-coding	0.140000	0.771144	
mm_82982.1	chr9	36135530	36135730	-	1	NA	NA	NA	0	NR_030729	100041618	Mm.484847	NR_030729	ENSMUSG00000098390	Gm3434	-	predicted gene 3434	ncRNA	0.005000	0.567164	
mm_59032.1	chr7	19307147	19307347	+	1	NA	NA	NA	2798	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.015000	0.631841	
mm_155555.1	chrX	75095804	75096004	+	1	NA	NA	NA	50	NM_001030307	245474	Mm.291062	NM_001030307	ENSMUSG00000031403	Dkc1	BC068171	dyskeratosis congenita 1, dyskerin	protein-coding	0.055000	0.606965	
mm_49435.1	chr6	29281082	29281282	+	1	NA	NA	NA	41	NM_001101486	245884	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	0.010000	0.572139	
mm_126252.1	chr15	79030754	79030954	+	1	NA	NA	NA	-20	NM_013847	26912	Mm.237085	NM_013847	ENSMUSG00000006378	Gcat	AI526977|Kbl	glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)	protein-coding	0.065000	0.601990	-32(CCTTTTAAAGTG,+,0.00)
mm_9152.1	chr1	170927425	170927625	-	1	NA	NA	NA	58	NM_001160215	98752	Mm.1850	NM_145141	ENSMUSG00000038421	Fcrla	BB219290|FCRL|FCRL1|FREB|Fcrlm1|Fcrx|Freb1|mFREB|mFcrX	Fc receptor-like A	protein-coding	0.005000	0.457711	
mm_142337.1	chr17	43569852	43570052	-	1	NA	NA	NA	1501	NM_013737	27226	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.010000	0.537313	14(GGCTCTTTAAAG,-,0.00),16(CTCTTTAAAGTC,+,0.00)
mm_108037.1	chr12	73867586	73867786	+	1	NA	NA	NA	-33638	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.000000	0.373134	
mm_98391.1	chr11	94214474	94214674	+	1	NA	NA	NA	3120	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.020000	0.487562	
mm_106346.1	chr11	118393312	118393512	-	1	NA	NA	NA	8519	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.010000	0.517413	
mm_96581.1	chr11	69070828	69071028	+	1	NA	NA	NA	119	NM_028336	66910	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	0.055000	0.601990	
mm_8911.1	chr1	163312971	163313171	-	1	NA	NA	NA	579	NM_011127	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.035000	0.457711	-47(TTTTTTAAAGCC,+,0.00),81(CGCTTTTTAAGA,-,0.00)
mm_119830.1	chr14	54360983	54361183	+	1	NA	NA	NA	242	NM_026936	69089	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	0.075000	0.646766	
mm_104379.1	chr11	94456365	94456565	-	1	NA	NA	NA	17733	NM_001177888	12291	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0.010000	0.562189	
mm_148971.1	chr19	7539032	7539232	+	1	NA	NA	NA	-18327	NM_139269	225845	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.005000	0.467662	
mm_94268.1	chr11	3530846	3531046	+	1	NA	NA	NA	8346	NM_013870	29856	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.010000	0.631841	
mm_83739.1	chr9	51101815	51102015	-	1	NA	NA	NA	163	NM_177702	235345	Mm.72828	NM_177702	ENSMUSG00000032057	4833427G06Rik	-	RIKEN cDNA 4833427G06 gene	protein-coding	0.045000	0.587065	
mm_113572.1	chr13	39824094	39824294	+	1	NA	NA	NA	463817	NM_172143	218165	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	0.040000	0.557214	
mm_48494.1	chr5	142746620	142746820	-	1	NA	NA	NA	44619	NM_146257	243328	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.005000	0.323383	
mm_4614.1	chr1	178566379	178566579	+	1	NA	NA	NA	37354	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.015000	0.432836	
mm_90856.1	chr10	8829715	8829915	-	1	NA	NA	NA	56255	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.000000	0.616915	
mm_49436.1	chr6	29313365	29313565	+	1	NA	NA	NA	-5675	NM_001289663	330277	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	0.000000	0.398010	
mm_167935.1	chrX	107149551	107149751	+	1	NA	NA	NA	36	NM_175442	213438	Mm.265244	NM_175442	ENSMUSG00000054293	A630033H20Rik	AI662791|P2ry10	RIKEN cDNA A630033H20 gene	protein-coding	0.010000	0.378109	
mm_20156.1	chr2	122118233	122118433	-	1	NA	NA	NA	53	NM_145531	214585	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	spastic paraplegia 11	protein-coding	0.090000	0.721393	
mm_150977.1	chr19	46501696	46501896	+	1	NA	NA	NA	148	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.115000	0.736318	
mm_134969.1	chr16	32003053	32003253	-	1	NA	NA	NA	134	NM_177103	320213	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	0.120000	0.716418	
mm_158010.1	chrX	95478022	95478222	-	1	NA	NA	NA	7	NM_080858	70392	Mm.79122	NM_080858	ENSMUSG00000031204	Asb12	2310036C05Rik|Asb-12	ankyrin repeat and SOCS box-containing 12	protein-coding	0.000000	0.502488	
mm_121557.1	chr14	122484174	122484374	+	1	NA	NA	NA	8890	NM_009574	22772	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0.025000	0.552239	
mm_91809.1	chr10	53993673	53993873	-	1	NA	NA	NA	82023	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.005000	0.412935	
mm_97442.1	chr11	78178896	78179096	+	1	NA	NA	NA	169	NR_106113	102465761		NR_106113	ENSMUSG00000099101	Mir7653	Gm27900|mmu-mir-7653	microRNA 7653	ncRNA	0.070000	0.631841	
mm_127676.1	chr15	102921027	102921227	+	1	NA	NA	NA	-4	NM_010464	15422	Mm.207062	NM_010464	ENSMUSG00000001655	Hoxc13	-	homeobox C13	protein-coding	0.045000	0.636816	32(GTTTTTAAAAAG,-,0.00)
mm_129555.1	chr15	79455444	79455644	-	1	NA	NA	NA	-13487	NM_013767	27373	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.055000	0.671642	
mm_32598.1	chr4	111777496	111777696	+	1	NA	NA	NA	57586	NM_026470	67946	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	0.010000	0.477612	
mm_148548.1	chr19	4711274	4711474	+	1	NA	NA	NA	151	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	0.040000	0.512438	
mm_6674.1	chr1	80340564	80340764	-	1	NA	NA	NA	26	NM_001313728	26554	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.110000	0.706468	
mm_59875.1	chr7	30280459	30280659	+	1	NA	NA	NA	-138	NM_146186	233064	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik	WD repeat domain 62	protein-coding	0.010000	0.497512	
mm_52991.1	chr6	123265991	123266191	+	1	NA	NA	NA	3984	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.010000	0.447761	
mm_40948.1	chr5	76822464	76822664	+	1	NA	NA	NA	-18035	NM_001163793	320827	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.030000	0.512438	-72(CCTTTTAAGAAG,+,0.00)
mm_151851.1	chr19	5796267	5796467	-	1	NA	NA	NA	-386	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.010000	0.447761	9(CACCAGAAAAGG,-,0.00)
mm_165229.1	chr2	54610543	54610743	+	1	NA	NA	NA	174256	NM_173030	271786	Mm.330227	NM_173030	ENSMUSG00000060988	Galnt13	A230002A12|A230020F20|BB182356	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	protein-coding	0.000000	0.388060	
mm_97225.1	chr11	75650518	75650718	+	1	NA	NA	NA	-891	NM_008659	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.025000	0.616915	
mm_92570.1	chr10	79888009	79888209	-	1	NA	NA	NA	1797	NM_015779	50701	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0.020000	0.532338	
mm_96563.1	chr11	69025949	69026149	+	1	NA	NA	NA	10138	NM_001013256	68964	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	0.020000	0.517413	
mm_86206.1	chr9	119983641	119983841	-	1	NA	NA	NA	917	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.150000	0.766169	
mm_55568.1	chr6	71371205	71371405	-	1	NA	NA	NA	-2122	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.010000	0.457711	-35(GCATATAAAGTG,+,0.00)
mm_16981.1	chr2	18030870	18031070	-	1	NA	NA	NA	3721	NR_028378	100034739	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	0.025000	0.368159	
mm_27188.1	chr3	34653899	34654099	-	1	NA	NA	NA	4004	NM_011443	20674	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0.025000	0.437811	-29(TCTTTTAGAGTC,+,0.00)
mm_73966.1	chr8	120488401	120488601	+	1	NA	NA	NA	-365	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.035000	0.527363	
mm_144846.1	chr18	36597686	36597886	+	1	NA	NA	NA	37183	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.000000	0.383085	
mm_2557.1	chr1	112457472	112457672	+	1	NA	NA	NA	-592654	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0.005000	0.437811	
mm_50682.1	chr6	51575715	51575915	+	1	NA	NA	NA	31292	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.035000	0.512438	
mm_1842.1	chr1	82851105	82851305	+	1	NA	NA	NA	11745	NM_001347077	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.015000	0.422886	
mm_99169.1	chr11	100736167	100736367	+	1	NA	NA	NA	1948	NM_024456	19345	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0.025000	0.562189	
mm_6130.1	chr1	64532783	64532983	-	1	NA	NA	NA	79	NM_001037726	12912	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.105000	0.691542	
mm_89813.1	chr10	103369237	103369437	+	1	NA	NA	NA	1529	NM_175328	103098	Mm.458408	NM_175328	ENSMUSG00000019894	Slc6a15	AA536730|AI326450|AI326451|v7-3	solute carrier family 6 (neurotransmitter transporter), member 15	protein-coding	0.020000	0.512438	
mm_109627.1	chr12	112766749	112766949	+	1	NA	NA	NA	6194	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.025000	0.562189	67(GCCCATAAGAGC,-,0.00)
mm_7196.1	chr1	92996942	92997142	-	1	NA	NA	NA	-9292	NM_177587	208760	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0.015000	0.512438	
mm_91451.1	chr10	33951127	33951327	-	1	NA	NA	NA	-15	NM_028287	72580	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	0.050000	0.582090	
mm_5372.1	chr1	30804130	30804330	-	1	NA	NA	NA	59026	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding	0.030000	0.472637	
mm_135016.1	chr16	32487158	32487358	-	1	NA	NA	NA	621	NM_145932	106407	Mm.476915	NM_145932	ENSMUSG00000035699	Slc51a	AV001382|AW261577|D630035O19Rik|OSTalpha|Osta	solute carrier family 51, alpha subunit	protein-coding	0.015000	0.547264	
mm_12611.1	chr2	74686455	74686655	+	1	NA	NA	NA	4232	NM_008273	15431	Mm.207763	NM_008273	ENSMUSG00000042499	Hoxd11	E230017H14Rik|Hox-4.6|Hox-5.4|Hox-5.5	homeobox D11	protein-coding	0.035000	0.437811	
mm_171994.1	chr5	99963943	99964143	-	1	NA	NA	NA	14895	NM_001077266	11991	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.010000	0.447761	
mm_44299.1	chr5	8622928	8623128	-	1	NA	NA	NA	-76	NM_198620	242819	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0.095000	0.721393	
mm_21788.1	chr2	164856831	164857031	-	1	NA	NA	NA	777	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.100000	0.731343	
mm_109802.1	chr12	3309746	3309946	-	1	NA	NA	NA	123	NM_016676	19325	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.135000	0.706468	
mm_2255.1	chr1	91093465	91093665	+	1	NA	NA	NA	40121	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.010000	0.547264	
mm_107616.1	chr12	49949110	49949310	+	1	NA	NA	NA	-468348	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA	0.020000	0.467662	
mm_20995.1	chr2	152332207	152332407	-	1	NA	NA	NA	118	NM_001083921	24105	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0.110000	0.731343	
mm_6731.1	chr1	82798356	82798556	-	1	NA	NA	NA	-30000	NM_025453	66261	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.015000	0.532338	
mm_31410.1	chr4	48047978	48048178	+	1	NA	NA	NA	2773	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.040000	0.616915	
mm_170826.1	chr2	176798524	176798724	+	1	NA	NA	NA	24	NM_001205057	100039123	Mm.389409	NM_001205057	ENSMUSG00000078877	Gm14295	OTTMUSG00000016219	predicted gene 14295	protein-coding	0.015000	0.487562	
mm_3824.1	chr1	159310017	159310217	+	1	NA	NA	NA	16344	NR_144489	100846986		NR_144489		Pou5f1-rs1	Gm21053|Oct4P2|Otf-3rs|Otf3-rs1|Otf3a	POU domain, class 5, transcription factor 1, related sequence 1	pseudo	0.000000	0.402985	
mm_21089.1	chr2	153161366	153161566	-	1	NA	NA	NA	165	NM_133847	99237	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.050000	0.532338	
mm_99997.1	chr11	114790605	114790805	+	1	NA	NA	NA	5187	NM_028055	72014	Mm.38347	NM_028055	ENSMUSG00000000202	Btbd17	1500005I02Rik|Tango10a	BTB (POZ) domain containing 17	protein-coding	0.010000	0.497512	
mm_119421.1	chr14	45337422	45337622	+	1	NA	NA	NA	7698	NM_025959	67089	Mm.18472	NM_025959	ENSMUSG00000021832	Psmc6	2300001E01Rik|AI451058	proteasome (prosome, macropain) 26S subunit, ATPase, 6	protein-coding	0.010000	0.338308	
mm_81951.1	chr9	120539781	120539981	+	1	NA	NA	NA	63	NM_178676	215446	Mm.76648	NM_178676	ENSMUSG00000041608	Entpd3	Cd39l3|HB6|NTPDase-3	ectonucleoside triphosphate diphosphohydrolase 3	protein-coding	0.080000	0.711443	
mm_83446.1	chr9	45009717	45009917	-	1	NA	NA	NA	-227	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.020000	0.557214	
mm_38599.1	chr4	141846268	141846468	-	1	NA	NA	NA	-9	NM_001033875	76701	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	0.010000	0.537313	49(GCCTATAAATGC,-,0.00)
mm_147968.1	chr18	67244297	67244497	-	1	NA	NA	NA	1433	NM_172630	225651	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	A530095G11	metallophosphoesterase 1	protein-coding	0.010000	0.487562	-34(GTATATAAAAGC,-,0.00)
mm_99236.1	chr11	101070001	101070201	+	1	NA	NA	NA	7	NM_013792	27419	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.075000	0.686567	
mm_132506.1	chr16	36955876	36956076	+	1	NA	NA	NA	20993	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.010000	0.487562	
mm_158905.1	chr1	37368889	37369089	+	1	NA	NA	NA	-228	NM_001290798	269180	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.010000	0.542289	
mm_109794.1	chr12	3256889	3257089	-	1	NA	NA	NA	21198	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.010000	0.378109	
mm_163982.1	chr14	56575538	56575738	+	1	NA	NA	NA	19	NM_001145978	328417	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	0.095000	0.706468	-82(CCTCTAAGGGGC,+,0.00)
mm_125768.1	chr15	74563423	74563623	+	1	NA	NA	NA	47327	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0.070000	0.701493	
mm_50660.1	chr6	51477377	51477577	+	1	NA	NA	NA	6861	NM_007624	12417	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	0.025000	0.452736	
mm_110291.1	chr12	32208116	32208316	-	1	NA	NA	NA	122	NM_001146201	30955	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphoinositide-3-kinase, catalytic, gamma polypeptide	protein-coding	0.030000	0.492537	
mm_102780.1	chr11	68386888	68387088	-	1	NA	NA	NA	-162	NM_008744	18208	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0.165000	0.771144	
mm_44838.1	chr5	34169338	34169538	-	1	NA	NA	NA	-14	NM_146159	231123	Mm.319286	NM_146159	ENSMUSG00000079555	Haus3	D4S43h|D5H4S43|D5H4S43E	HAUS augmin-like complex, subunit 3	protein-coding	0.105000	0.641791	
mm_146898.1	chr18	30420008	30420208	-	1	NA	NA	NA	147212	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding	0.025000	0.447761	-23(GCATTTAAAAAC,-,0.00)
mm_71358.1	chr8	45658785	45658985	+	1	NA	NA	NA	-3108	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.020000	0.447761	-40(CCTTTTAAAAAG,+,0.00),-40(CCTTTTAAAAAG,-,0.00)
mm_13008.1	chr2	90909092	90909292	+	1	NA	NA	NA	4406	NM_025991	67136	Mm.330394	NM_025991	ENSMUSG00000005505	Kbtbd4	2510026C23Rik	kelch repeat and BTB (POZ) domain containing 4	protein-coding	0.030000	0.547264	
mm_99638.1	chr11	105240291	105240491	+	1	NA	NA	NA	-52255	NM_008626	17534	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0.005000	0.412935	
mm_15839.1	chr2	164715205	164715405	+	1	NA	NA	NA	0	NM_001040055	641368	Mm.422380	NM_001040055	ENSMUSG00000074593	Spint5	Gm14316|OTTMUSG00000016293	serine protease inhibitor, Kunitz type 5	protein-coding	0.025000	0.542289	
mm_110814.1	chr12	72374992	72375192	-	1	NA	NA	NA	33962	NM_001286448	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.030000	0.542289	
mm_32129.1	chr4	99037454	99037654	+	1	NA	NA	NA	6600	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.015000	0.477612	
mm_31850.1	chr4	74384010	74384210	+	1	NA	NA	NA	132231	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.000000	0.333333	
mm_30239.1	chr3	146405711	146405911	-	1	NA	NA	NA	1169	NM_138744	99167	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	0.025000	0.467662	
mm_104555.1	chr11	96822642	96822842	-	1	NA	NA	NA	1271	NM_001130453	18023	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	0.000000	0.497512	-64(CCCTTTATGCAA,+,0.00)
mm_92081.1	chr10	62764301	62764501	-	1	NA	NA	NA	1205	NR_028557	100217463		NR_028557		Snord98	MBII-419	small nucleolar RNA, C/D box 98	snoRNA	0.035000	0.532338	
mm_44478.1	chr5	23433858	23434058	-	1	NA	NA	NA	395	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.075000	0.686567	
mm_23013.1	chr3	34560099	34560299	+	1	NA	NA	NA	-182	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA	0.015000	0.363184	
mm_147641.1	chr18	60269567	60269767	-	1	NA	NA	NA	3600	NM_001034859	225594	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	0.005000	0.363184	
mm_14008.1	chr2	122116830	122117030	+	1	NA	NA	NA	1456	NM_145531	214585	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	spastic paraplegia 11	protein-coding	0.005000	0.417910	-26(GCCTTTATATAC,+,0.00),-26(GCCTTTATATAC,-,0.00),-24(CTTTATATACCA,+,0.00)
mm_89561.1	chr10	95319196	95319396	+	1	NA	NA	NA	4413	NM_001330138	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.040000	0.507463	-95(ATCTAGAAAAGG,-,0.00)
mm_105014.1	chr11	100414741	100414941	-	1	NA	NA	NA	-22	NM_176830	66180	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	0.060000	0.651741	
mm_50102.1	chr6	41533112	41533312	+	1	NA	NA	NA	11436	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.502488	
mm_98926.1	chr11	98348961	98349161	+	1	NA	NA	NA	655	NM_144828	19049	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0.100000	0.696517	
mm_160822.1	chr11	30890844	30891044	+	1	NA	NA	NA	5586	NM_175490	237716	Mm.338361	NM_175490	ENSMUSG00000043999	Gpr75	-	G protein-coupled receptor 75	protein-coding	0.010000	0.388060	
mm_106895.1	chr12	8012458	8012658	+	1	NA	NA	NA	34881	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.020000	0.447761	
mm_117139.1	chr13	60940543	60940743	-	1	NA	NA	NA	1292	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding	0.005000	0.457711	
mm_9904.1	chr1	187199385	187199585	-	1	NA	NA	NA	15961	NM_029067	74717	Mm.250430	NM_028848	ENSMUSG00000026611	Spata17	1700065F16Rik|4930504I07Rik|4930513F16Rik|MSRG-11	spermatogenesis associated 17	protein-coding	0.000000	0.527363	
mm_108135.1	chr12	76086771	76086971	+	1	NA	NA	NA	90388	NM_010157	13983	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0.040000	0.502488	
mm_71587.1	chr8	54954764	54954964	+	1	NA	NA	NA	136	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.020000	0.497512	
mm_92843.1	chr10	81508115	81508315	-	1	NA	NA	NA	-8078	NM_010102	13611	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0.020000	0.507463	
mm_33593.1	chr4	132563988	132564188	+	1	NA	NA	NA	21	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.010000	0.601990	
mm_27930.1	chr3	79567590	79567790	-	1	NA	NA	NA	-11	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.200000	0.835821	
mm_49212.1	chr6	15727124	15727324	+	1	NA	NA	NA	6563	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.000000	0.393035	
mm_151739.1	chr19	4961630	4961830	-	1	NA	NA	NA	-576	NM_025553	66419	Mm.28494	NM_025553	ENSMUSG00000024902	Mrpl11	2410001P07Rik|L11mt	mitochondrial ribosomal protein L11	protein-coding	0.030000	0.398010	
mm_73695.1	chr8	111629750	111629950	+	1	NA	NA	NA	472	NM_027570	52815	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	0.005000	0.537313	
mm_26377.1	chr3	142566319	142566519	+	1	NA	NA	NA	5923	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.025000	0.368159	
mm_167722.1	chr9	101074002	101074202	+	1	NA	NA	NA	-660	NM_001100451	77853	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	male-specific lethal 2 homolog (Drosophila)	protein-coding	0.115000	0.711443	
mm_58504.1	chr7	3981012	3981212	+	1	NA	NA	NA	-65611	NR_028115	18726	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	0.000000	0.432836	
mm_45085.1	chr5	44089449	44089649	-	1	NA	NA	NA	5219	NM_001163581	19126	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.010000	0.507463	70(GGCCTTATAGGC,-,0.00),72(CCTTATAGGCGC,+,0.00)
mm_143554.1	chr17	74173732	74173932	-	1	NA	NA	NA	121031	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.000000	0.417910	
mm_146857.1	chr18	24205756	24205956	-	1	NA	NA	NA	-138	NM_001160404	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.185000	0.830846	
mm_8696.1	chr1	157412446	157412646	-	1	NA	NA	NA	49	NM_177644	226525	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	0.135000	0.726368	
mm_103638.1	chr11	78963030	78963230	-	1	NA	NA	NA	21794	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.005000	0.552239	
mm_150583.1	chr19	40660056	40660256	+	1	NA	NA	NA	386	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.025000	0.467662	
mm_68357.1	chr7	106511192	106511392	-	1	NA	NA	NA	-70219	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.497512	70(ACCCCTAAAAGA,-,0.00)
mm_65431.1	chr7	25367580	25367780	-	1	NA	NA	NA	2044	NM_001081375	72383	Mm.34382	NM_028219	ENSMUSG00000063651	Cnfn	2210418J09Rik	cornifelin	protein-coding	0.030000	0.527363	
mm_55624.1	chr6	72235380	72235580	-	1	NA	NA	NA	97	NM_153778	71093	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0.090000	0.656716	
mm_90945.1	chr10	12964402	12964602	-	1	NA	NA	NA	-243	NM_001163591	74732	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.070000	0.597015	
mm_162822.1	chr10	80855173	80855373	+	1	NA	NA	NA	-2	NM_175195	73218	Mm.3285	NM_175195	ENSMUSG00000035206	Sppl2b	3110056O03Rik|AW550292|PSL1	signal peptide peptidase like 2B	protein-coding	0.145000	0.706468	
mm_66365.1	chr7	43533036	43533236	-	1	NA	NA	NA	35	NM_001111058	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.020000	0.522388	
mm_118991.1	chr14	28505456	28505656	+	1	NA	NA	NA	83	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.035000	0.592040	
mm_23899.1	chr3	83031670	83031870	+	1	NA	NA	NA	5617	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.020000	0.437811	
mm_161909.1	chr18	62530743	62530943	-	1	NA	NA	NA	17900	NM_134136	107035	Mm.21295	NM_134136	ENSMUSG00000042211	Fbxo38	6030410I24Rik|AU044865|AW214031|Moka|SP329	F-box protein 38	protein-coding	0.005000	0.432836	
mm_70216.1	chr7	144937890	144938090	-	1	NA	NA	NA	1935	NM_007631	12443	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.040000	0.587065	
mm_140078.1	chr17	75178685	75178885	+	1	NA	NA	NA	4	NM_001331235	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.025000	0.512438	
mm_163096.1	chr11	69735032	69735232	-	1	NA	NA	NA	23501	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.010000	0.532338	
mm_108679.1	chr12	86693337	86693537	+	1	NA	NA	NA	14737	NM_177354	238328	Mm.216101	NM_177354	ENSMUSG00000021256	Vash1	AI834978|D930046M13Rik|G630009D10Rik	vasohibin 1	protein-coding	0.000000	0.373134	
mm_10964.1	chr2	25701933	25702133	+	1	NA	NA	NA	1959	NM_153558	227627	Mm.44630	NM_153558	ENSMUSG00000062061	Obp2a	BC027556|Lcn13	odorant binding protein 2A	protein-coding	0.015000	0.557214	
mm_32585.1	chr4	111290072	111290272	+	1	NA	NA	NA	-124834	NR_033793	67621	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0.050000	0.547264	
mm_138985.1	chr17	45487341	45487541	+	1	NA	NA	NA	-12503	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.015000	0.542289	
mm_17852.1	chr2	34754298	34754498	-	1	NA	NA	NA	834	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.150000	0.776119	
mm_15979.1	chr2	166714009	166714209	+	1	NA	NA	NA	-277	NM_177782	277360	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.075000	0.656716	
mm_2371.1	chr1	93235739	93235939	+	1	NA	NA	NA	-58	NM_172463	208777	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	0.110000	0.651741	-33(GGCTATTTAAAC,-,0.00),-31(CTATTTAAACCC,+,0.00)
mm_59878.1	chr7	30291686	30291886	+	1	NA	NA	NA	33	NM_001081114	76686	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	0.050000	0.636816	
mm_53195.1	chr6	125532498	125532698	+	1	NA	NA	NA	-20350	NM_011708	22371	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.000000	0.467662	
mm_45485.1	chr5	71095649	71095849	-	1	NA	NA	NA	100	NM_008066	14395	Mm.5304	NM_008066	ENSMUSG00000000560	Gabra2	C630048P16Rik|Gabra-2	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2	protein-coding	0.060000	0.592040	
mm_113965.1	chr13	51645172	51645372	+	1	NA	NA	NA	40	NM_025415	66197	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0.100000	0.621891	
mm_51590.1	chr6	83867014	83867214	+	1	NA	NA	NA	-35373	NM_146169	232164	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	0.090000	0.686567	
mm_149191.1	chr19	9939162	9939362	+	1	NA	NA	NA	-39729	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.015000	0.557214	
mm_70981.1	chr8	27177279	27177479	+	1	NA	NA	NA	-2733	NM_001080813	75767	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.025000	0.606965	
mm_23431.1	chr3	59081068	59081268	+	1	NA	NA	NA	20653	NM_173398	229323	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	0.020000	0.592040	
mm_62922.1	chr7	118593600	118593800	+	1	NA	NA	NA	1254	NM_001331203	381914	Mm.291232	NM_001331201	ENSMUSG00000109284	B230311B06Rik	Gm1695	RIKEN cDNA B230311B06 gene	protein-coding	0.010000	0.457711	
mm_76126.1	chr8	80879808	80880008	-	1	NA	NA	NA	571	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.115000	0.741294	
mm_95063.1	chr11	32532758	32532958	+	1	NA	NA	NA	-408	NM_009288	20868	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.090000	0.656716	
mm_117926.1	chr13	99434126	99434326	-	1	NA	NA	NA	-21400	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.010000	0.398010	
mm_11403.1	chr2	31509933	31510133	+	1	NA	NA	NA	39725	NR_002687	432466	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.015000	0.417910	
mm_104292.1	chr11	90389491	90389691	-	1	NA	NA	NA	1326	NM_172563	217082	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0.035000	0.611940	
mm_162549.1	chr1	171196077	171196277	-	1	NA	NA	NA	91	NM_025557	66425	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	0.065000	0.666667	-94(CACTATAAAAGG,-,0.00)
mm_104901.1	chr11	99620820	99621020	-	1	NA	NA	NA	-516	NM_001177537	100502803	Mm.351892	NM_001177537	ENSMUSG00000062278	Gm11562	OTTMUSG00000002199	predicted gene 11562	protein-coding	0.010000	0.492537	-34(GGCTATAAATGC,-,0.00)
mm_68758.1	chr7	121517086	121517286	-	1	NA	NA	NA	72650	NR_102286	75793	Mm.23397	NR_102286		4933432K03Rik	1700001C18Rik|4930433G11Rik|AI428127	RIKEN cDNA 4933432K03 gene	ncRNA	0.000000	0.492537	
mm_99.1	chr1	9450491	9450691	+	1	NA	NA	NA	-94817	NM_021511	59014	Mm.29061	NM_021511	ENSMUSG00000061024	Rrs1	5730466A07Rik|AA415037|D1Ertd701e|Rrr	ribosome biogenesis regulator 1	protein-coding	0.005000	0.477612	
mm_9019.1	chr1	166127836	166128036	-	1	NA	NA	NA	-38	NM_001160049	240892	Mm.35315	NM_001033344	ENSMUSG00000026564	Dusp27	C130085G02Rik|Gm209	dual specificity phosphatase 27 (putative)	protein-coding	0.010000	0.507463	
mm_14683.1	chr2	140055941	140056141	+	1	NA	NA	NA	10764	NM_001159640	75812	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0.000000	0.477612	
mm_96314.1	chr11	63963793	63963993	+	1	NA	NA	NA	-333	NR_131111	78883	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	0.005000	0.378109	
mm_103928.1	chr11	83648129	83648329	-	1	NA	NA	NA	1149	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.025000	0.562189	
mm_8006.1	chr1	134784625	134784825	-	1	NA	NA	NA	18996	NR_015606	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.025000	0.487562	
mm_115698.1	chr13	14063316	14063516	-	1	NA	NA	NA	72	NM_001331119	14593	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	0.070000	0.611940	
mm_69462.1	chr7	133186330	133186530	-	1	NA	NA	NA	58179	NR_046279	74970	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	0.015000	0.557214	
mm_97882.1	chr11	83240184	83240384	+	1	NA	NA	NA	16708	NR_015519	100043636	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0.000000	0.487562	
mm_71367.1	chr8	45746578	45746778	+	1	NA	NA	NA	72619	NR_045739	319940	Mm.441720	NR_045739	ENSMUSG00000085440	Sorbs2os	D330022K07Rik	sorbin and SH3 domain containing 2, opposite strand	ncRNA	0.020000	0.412935	
mm_23382.1	chr3	55783293	55783493	+	1	NA	NA	NA	883	NM_010750	17116	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.050000	0.532338	
mm_1426.1	chr1	67174506	67174706	+	1	NA	NA	NA	51579	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.010000	0.393035	
mm_28155.1	chr3	87748507	87748707	-	1	NA	NA	NA	16	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding	0.045000	0.651741	
mm_81642.1	chr9	110896864	110897064	+	1	NA	NA	NA	16642	NM_001146060	235633	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0.010000	0.547264	
mm_7147.1	chr1	91398646	91398846	-	1	NA	NA	NA	37	NM_023343	67444	Mm.337240	NM_023343	ENSMUSG00000026309	Ilkap	0710007A14Rik|1600009O09Rik|PP2C-DELTA	integrin-linked kinase-associated serine/threonine phosphatase 2C	protein-coding	0.175000	0.800995	
mm_156186.1	chrX	133908352	133908552	+	1	NA	NA	NA	27	NM_001083895	68792	Mm.263553	NM_026838	ENSMUSG00000031253	Srpx2	1110039C07Rik|SRP|SRPUL	sushi-repeat-containing protein, X-linked 2	protein-coding	0.005000	0.492537	
mm_83103.1	chr9	40341417	40341617	-	1	NA	NA	NA	8045	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.005000	0.492537	
mm_97454.1	chr11	78194650	78194850	+	1	NA	NA	NA	1358	NM_001045516	216974	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	0.055000	0.641791	
mm_172851.1	chr9	37038693	37038893	+	1	NA	NA	NA	108529	NM_148950	208076	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.015000	0.363184	
mm_172456.1	chr7	36118141	36118341	+	1	NA	NA	NA	-315252	NM_177739	668501	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	0.020000	0.432836	
mm_58203.1	chr6	143233260	143233460	-	1	NA	NA	NA	-12528	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.050000	0.497512	
mm_26222.1	chr3	138902380	138902580	+	1	NA	NA	NA	160272	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.025000	0.582090	
mm_14709.1	chr2	143078375	143078575	+	1	NA	NA	NA	-17	NM_020595	57329	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	0.005000	0.477612	83(GTGTATTTATGG,-,0.00)
mm_87604.1	chr10	57727854	57728054	+	1	NA	NA	NA	-56969	NM_021272	12140	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.020000	0.477612	
mm_77576.1	chr8	123515382	123515582	-	1	NA	NA	NA	-27	NM_001170976	72185	Mm.27925	NM_028146	ENSMUSG00000031970	Dbndd1	2810427I04Rik|D8Ertd590e	dysbindin (dystrobrevin binding protein 1) domain containing 1	protein-coding	0.080000	0.776119	
mm_102667.1	chr11	65032308	65032508	-	1	NA	NA	NA	53373	NM_023479	68626	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	0.025000	0.517413	
mm_133169.1	chr16	72027366	72027566	+	1	NA	NA	NA	206861	NR_131116	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0.025000	0.422886	
mm_151115.1	chr19	47864438	47864638	+	1	NA	NA	NA	-1007	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.005000	0.467662	
mm_132148.1	chr16	32102436	32102636	+	1	NA	NA	NA	2734	NM_025892	66994	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0.020000	0.557214	
mm_158643.1	chrX	155338323	155338523	-	1	NA	NA	NA	37	NM_016764	53381	Mm.247542	NM_016764	ENSMUSG00000025289	Prdx4	AOE372|Prx-iv|Prx4|TRANK	peroxiredoxin 4	protein-coding	0.120000	0.691542	
mm_52087.1	chr6	97829475	97829675	+	1	NA	NA	NA	22517	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.015000	0.437811	-33(CCTTATATAGAG,+,0.00)
mm_120871.1	chr14	75230498	75230698	+	1	NA	NA	NA	-11689	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.015000	0.492537	
mm_102826.1	chr11	69070609	69070809	-	1	NA	NA	NA	-100	NM_025838	66910	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	0.075000	0.597015	
mm_123942.1	chr14	73375905	73376105	-	1	NA	NA	NA	9266	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.015000	0.373134	
mm_172540.1	chr7	96209885	96210085	+	1	NA	NA	NA	-652	NM_011858	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.070000	0.616915	
mm_142916.1	chr17	53568246	53568446	-	1	NA	NA	NA	1375	NM_020005	18519	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.025000	0.606965	
mm_140408.1	chr17	87646155	87646355	+	1	NA	NA	NA	10276	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.055000	0.547264	
mm_140345.1	chr17	86829314	86829514	+	1	NA	NA	NA	75550	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.015000	0.582090	
mm_171647.1	chr4	37225052	37225252	-	1	NA	NA	NA	-273408	NM_001165999	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.035000	0.452736	
mm_124141.1	chr14	87141040	87141240	-	1	NA	NA	NA	-26	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding	0.115000	0.671642	
mm_70397.1	chr8	11175123	11175323	+	1	NA	NA	NA	-137582	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.010000	0.442786	
mm_161265.1	chr14	6108328	6108528	-	1	NA	NA	NA	178822	NM_001270812	100861615	Mm.488431	NM_001270812	ENSMUSG00000079396	LOC100861615	-	alpha takusan-like	protein-coding	0.075000	0.651741	
mm_106248.1	chr11	117813388	117813588	-	1	NA	NA	NA	3821	NM_009304	20973	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0.015000	0.582090	
mm_134965.1	chr16	31948322	31948522	-	1	NA	NA	NA	99	NR_027897	106264	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	0.135000	0.726368	
mm_77334.1	chr8	119558378	119558578	-	1	NA	NA	NA	283	NM_001167910	56453	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	0.145000	0.731343	
mm_169713.1	chr15	76337572	76337772	+	1	NA	NA	NA	-5851	NM_025567	66445	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	0.065000	0.567164	
mm_93171.1	chr10	93310904	93311104	-	1	NA	NA	NA	155	NM_001322268	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.070000	0.636816	
mm_82981.1	chr9	35969420	35969620	-	1	NA	NA	NA	-119640	NR_030730	100041605	Mm.99350	NR_030730	ENSMUSG00000098705	Gm3428	-	predicted gene 3428	ncRNA	0.005000	0.373134	-35(CTTTATAAAAGG,-,0.00)
mm_138849.1	chr17	40811011	40811211	+	1	NA	NA	NA	-38	NM_011269	19743	Mm.12961	NM_011269	ENSMUSG00000023926	Rhag	CD241|Rh50|Rh50A	Rhesus blood group-associated A glycoprotein	protein-coding	0.005000	0.467662	
mm_124833.1	chr15	9186195	9186395	+	1	NA	NA	NA	-30870	NM_001285980	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.000000	0.298507	49(TCTTTTATATGG,+,0.00)
mm_91431.1	chr10	33256138	33256338	-	1	NA	NA	NA	119	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.005000	0.378109	
mm_19605.1	chr2	102451735	102451935	-	1	NA	NA	NA	-43	NM_010218	14221	Mm.29730	NM_010218	ENSMUSG00000075012	Fjx1	-	four jointed box 1 (Drosophila)	protein-coding	0.085000	0.711443	
mm_28304.1	chr3	89214283	89214483	-	1	NA	NA	NA	-48	NM_013604	17827	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	0.105000	0.696517	
mm_154332.1	chrM	3077	3277	+	1	NA	NA	NA	NA	NA									0.015000	0.358209	
mm_22527.1	chr3	7647063	7647263	+	1	NA	NA	NA	-33403	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.000000	0.338308	
mm_28879.1	chr3	97767870	97768070	-	1	NA	NA	NA	44	NR_110360	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.085000	0.656716	
mm_28262.1	chr3	88607235	88607435	-	1	NA	NA	NA	-8872	NM_001198911	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.035000	0.567164	
mm_57236.1	chr6	123282853	123283053	-	1	NA	NA	NA	6918	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.015000	0.457711	
mm_119037.1	chr14	30559690	30559890	+	1	NA	NA	NA	10659	NM_009388	21881	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0.040000	0.621891	
mm_25650.1	chr3	121449622	121449822	+	1	NA	NA	NA	23181	NM_028044	71994	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0.035000	0.512438	0(CTTTTTATGCTC,+,0.00)
mm_165718.1	chr3	101130656	101130856	+	1	NA	NA	NA	-20590	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding	0.045000	0.611940	
mm_125194.1	chr15	32695851	32696051	+	1	NA	NA	NA	-224772	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0.005000	0.412935	
mm_5947.1	chr1	56796075	56796275	-	1	NA	NA	NA	-158724	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	0.005000	0.358209	22(AGCTTTTAATGG,-,0.00),24(CTTTTAATGGGT,+,0.00)
mm_47373.1	chr5	122984897	122985097	-	1	NA	NA	NA	4102	NM_001003953	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.010000	0.487562	
mm_45075.1	chr5	43869034	43869234	-	1	NA	NA	NA	325	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.050000	0.601990	
mm_98172.1	chr11	87754766	87754966	+	1	NA	NA	NA	-1998	NR_029555	387160		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.010000	0.542289	
mm_64466.1	chr7	142790413	142790613	+	1	NA	NA	NA	109453	NM_009377	21823	Mm.1292	NM_009377	ENSMUSG00000000214	Th	-	tyrosine hydroxylase	protein-coding	0.020000	0.432836	
mm_10815.1	chr2	24350271	24350471	+	1	NA	NA	NA	5000	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.000000	0.358209	
mm_127817.1	chr15	5108329	5108529	-	1	NA	NA	NA	104	NM_001163138	239319	Mm.31252	NM_001163138	ENSMUSG00000041849	Card6	D730008L15	caspase recruitment domain family, member 6	protein-coding	0.010000	0.402985	
mm_58228.1	chr6	144685708	144685908	-	1	NA	NA	NA	12940	NR_040519	66760	Mm.233631	NR_040519	ENSMUSG00000085785	Sox5os3	4933425H06Rik	SRY (sex determining region Y)-box 5, opposite strand 3	ncRNA	0.000000	0.502488	
mm_91598.1	chr10	40936081	40936281	-	1	NA	NA	NA	52647	NM_031877	83767	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	0.020000	0.552239	
mm_48918.1	chr6	4004091	4004291	+	1	NA	NA	NA	204	NM_025331	66066	Mm.25547	NM_025331	ENSMUSG00000032766	Gng11	0610037B21Rik	guanine nucleotide binding protein (G protein), gamma 11	protein-coding	0.075000	0.676617	
mm_161002.1	chr11	116454096	116454296	-	1	NA	NA	NA	151	NM_001033267	217341	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0.030000	0.577114	
mm_63341.1	chr7	126964921	126965121	+	1	NA	NA	NA	-10893	NM_026638	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.000000	0.383085	-99(GTCTTGAAAAAG,-,0.00)
mm_146504.1	chr18	3309671	3309871	-	1	NA	NA	NA	-10215	NM_001110853	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.005000	0.402985	
mm_32228.1	chr4	102087625	102087825	+	1	NA	NA	NA	100885	NM_001085520	381536	Mm.297685	NM_001085520	ENSMUSG00000078625	Gm12789	OTTMUSG00000008445	predicted gene 12789	protein-coding	0.100000	0.686567	
mm_139626.1	chr17	57366996	57367196	+	1	NA	NA	NA	8410	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.442786	
mm_118481.1	chr14	11986138	11986338	+	1	NA	NA	NA	-203705	NM_001347593	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.005000	0.373134	10(TTCTCTATAGGG,-,0.00)
mm_69577.1	chr7	135700962	135701162	-	1	NA	NA	NA	15317	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.015000	0.343284	
mm_18471.1	chr2	62411790	62411990	-	1	NA	NA	NA	341	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.100000	0.631841	
mm_159425.1	chr3	108415355	108415555	-	1	NA	NA	NA	39	NM_017392	53883	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	0.085000	0.706468	
mm_12336.1	chr2	69670017	69670217	+	1	NA	NA	NA	-3	NM_001081087	228003	Mm.178784	NM_001081087	ENSMUSG00000075307	Klhl41	Gm112|Kbtbd10|SARCOSIN	kelch-like 41	protein-coding	0.030000	0.517413	
mm_99105.1	chr11	100119311	100119511	+	1	NA	NA	NA	1166	NM_001313949	16663	Mm.4646	NM_010662	ENSMUSG00000044041	Krt13	CK13|K13|Krt-1.13|Krt1-13	keratin 13	protein-coding	0.020000	0.517413	
mm_17243.1	chr2	25617581	25617781	-	1	NA	NA	NA	-3	NM_029859	77058	Mm.478493	NM_029859	ENSMUSG00000026940	Ccdc183	4921530D09Rik|Cccd183|Kiaa1984	coiled-coil domain containing 183	protein-coding	0.005000	0.502488	
mm_68566.1	chr7	115597810	115598010	-	1	NA	NA	NA	203699	NM_001277328	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.005000	0.452736	
mm_140332.1	chr17	86754071	86754271	+	1	NA	NA	NA	307	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.055000	0.651741	
mm_171928.1	chr5	61313862	61314062	-	1	NA	NA	NA	-494881	NM_019468	14380	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	0.040000	0.452736	
mm_143973.1	chr17	87427637	87427837	-	1	NA	NA	NA	4	NM_029298	75467	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0.085000	0.631841	
mm_24206.1	chr3	88621109	88621309	+	1	NA	NA	NA	103	NM_008487	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.120000	0.696517	
mm_47711.1	chr5	129997760	129997960	-	1	NA	NA	NA	4968	NM_010368	110006	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.035000	0.532338	
mm_81713.1	chr9	111351761	111351961	+	1	NA	NA	NA	40122	NM_001164659	320429	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	0.005000	0.502488	
mm_60953.1	chr7	47050599	47050799	+	1	NA	NA	NA	59	NM_026436	67893	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.090000	0.661692	
mm_137537.1	chr17	27556524	27556724	+	1	NA	NA	NA	20	NM_001166537	15361	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0.095000	0.681592	-94(CCTTTTAAATCC,+,0.00),-5(CTCTTTTTAAGC,-,0.00),-3(CTTTTTAAGCTC,+,0.00)
mm_98963.1	chr11	98664249	98664449	+	1	NA	NA	NA	-2	NM_021347	57911	Mm.458085	NM_021347	ENSMUSG00000017204	Gsdma	BB149167|Gsdm|Gsdm1|Gsdma1|H312E	gasdermin A	protein-coding	0.015000	0.552239	15(CCCTATAGACAG,+,0.00)
mm_115066.1	chr13	101442334	101442534	+	1	NA	NA	NA	-44854	NR_046187	78136	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	0.015000	0.422886	-33(GTCCATTAAAGA,-,0.00)
mm_132666.1	chr16	42180352	42180552	+	1	NA	NA	NA	123017	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0.005000	0.368159	
mm_156720.1	chrX	159708528	159708728	+	1	NA	NA	NA	27	NR_110970	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.015000	0.552239	
mm_134704.1	chr16	22857398	22857598	-	1	NA	NA	NA	171	NM_001081368	70573	Mm.68291	NM_001081368	ENSMUSG00000004462	Tbccd1	5730478M09Rik|AU015083|BB165076	TBCC domain containing 1	protein-coding	0.050000	0.542289	
mm_52838.1	chr6	121638194	121638394	+	1	NA	NA	NA	2121	NM_175628	232345	Mm.30151	NM_175628	ENSMUSG00000030111	A2m	A2mp	alpha-2-macroglobulin	protein-coding	0.020000	0.537313	
mm_126530.1	chr15	82016299	82016499	+	1	NA	NA	NA	30	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.090000	0.626866	
mm_39454.1	chr5	17574552	17574752	+	1	NA	NA	NA	-164	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.150000	0.796020	
mm_152056.1	chr19	6298797	6298997	-	1	NA	NA	NA	-7560	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.010000	0.532338	
mm_38943.1	chr4	150198383	150198583	-	1	NA	NA	NA	2652	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.025000	0.562189	
mm_16425.1	chr2	180290644	180290844	+	1	NA	NA	NA	-865	NM_173031	271887	Mm.246640	NM_173031	ENSMUSG00000038980	Rbbp8nl	4732416F18	RBBP8 N-terminal like	protein-coding	0.025000	0.557214	
mm_18726.1	chr2	72955678	72955878	-	1	NA	NA	NA	23503	NM_001098425	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.035000	0.522388	
mm_146430.1	chr18	84859329	84859529	+	1	NA	NA	NA	8015	NM_025797	109672	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.010000	0.507463	78(GTGTTTTAAAGC,-,0.00)
mm_12.1	chr1	4857594	4857794	+	1	NA	NA	NA	0	NM_001159750	21399	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.100000	0.621891	
mm_23994.1	chr3	86539726	86539926	+	1	NA	NA	NA	8457	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.015000	0.497512	-33(CTGTATAAAAGA,-,0.00)
mm_51217.1	chr6	71353877	71354077	+	1	NA	NA	NA	-19450	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.010000	0.547264	
mm_158800.1	chrX	167245635	167245835	-	1	NA	NA	NA	18594	NM_001313761	170744	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	0.020000	0.447761	
mm_42681.1	chr5	119796550	119796750	+	1	NA	NA	NA	-38013	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.060000	0.666667	
mm_31869.1	chr4	80004368	80004568	+	1	NA	NA	NA	-829745	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.015000	0.412935	
mm_31795.1	chr4	63979798	63979998	+	1	NA	NA	NA	67117	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding	0.005000	0.497512	
mm_36612.1	chr4	89282057	89282257	-	1	NA	NA	NA	35	NM_001040654	12578	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin-dependent kinase inhibitor 2A	protein-coding	0.055000	0.661692	
mm_105652.1	chr11	107189233	107189433	-	1	NA	NA	NA	48	NM_133702	68979	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.075000	0.611940	
mm_88869.1	chr10	81000619	81000819	+	1	NA	NA	NA	646	NM_001038655	14708	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.005000	0.477612	
mm_129392.1	chr15	78206299	78206499	-	1	NA	NA	NA	1	NM_013645	19293	Mm.2766	NM_013645	ENSMUSG00000005716	Pvalb	PV|Parv|Pva	parvalbumin	protein-coding	0.025000	0.587065	-36(GACTATTTAAGT,-,0.00)
mm_13459.1	chr2	105674332	105674532	+	1	NA	NA	NA	-1312	NM_001244200	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.035000	0.562189	
mm_1196.1	chr1	62703893	62704093	+	1	NA	NA	NA	676	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.030000	0.462687	
mm_45004.1	chr5	38480096	38480296	-	1	NA	NA	NA	110	NM_001102414	117591	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.020000	0.572139	
mm_153989.1	chr19	49368213	49368413	-	1	NA	NA	NA	1162288	NM_025696	66673	Mm.70980	NM_025696	ENSMUSG00000063434	Sorcs3	6330404A12Rik|AW045579	sortilin-related VPS10 domain containing receptor 3	protein-coding	0.005000	0.402985	
mm_17314.1	chr2	26438538	26438738	-	1	NA	NA	NA	6578	NM_153125	227648	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	0.015000	0.582090	
mm_157108.1	chrX	9437877	9438077	-	1	NA	NA	NA	31347	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.398010	
mm_72756.1	chr8	85492383	85492583	+	1	NA	NA	NA	-134	NM_173866	108682	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.075000	0.631841	
mm_150681.1	chr19	42052945	42053145	+	1	NA	NA	NA	817	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	0.015000	0.502488	
mm_91082.1	chr10	19012445	19012645	-	1	NA	NA	NA	-582	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.000000	0.368159	
mm_3332.1	chr1	137943072	137943272	+	1	NA	NA	NA	-23283	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.010000	0.353234	
mm_10432.1	chr2	14074069	14074269	+	1	NA	NA	NA	57	NM_011484	20844	Mm.273174	NM_011484	ENSMUSG00000026718	Stam	STAM1	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	protein-coding	0.080000	0.696517	
mm_107178.1	chr12	24973797	24973997	+	1	NA	NA	NA	-1035	NM_001081378	77480	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	0.015000	0.517413	
mm_64516.1	chr7	143829565	143829765	+	1	NA	NA	NA	6498	NM_007856	13360	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	0.025000	0.502488	
mm_115424.1	chr13	117220615	117220815	+	1	NA	NA	NA	142	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.080000	0.661692	
mm_75310.1	chr8	41209734	41209934	-	1	NA	NA	NA	5322	NM_145594	234199	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding	0.020000	0.507463	
mm_54895.1	chr6	47190338	47190538	-	1	NA	NA	NA	-53958	NM_025771	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.025000	0.492537	
mm_99510.1	chr11	103101642	103101842	+	1	NA	NA	NA	54	NM_025988	67131	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	0.080000	0.651741	
mm_82394.1	chr9	14718287	14718487	-	1	NA	NA	NA	22346	NM_177905	330890	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	0.010000	0.547264	
mm_44057.1	chr5	148264837	148265037	+	1	NA	NA	NA	127878	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.020000	0.587065	
mm_136852.1	chr17	12793243	12793443	+	1	NA	NA	NA	-23637	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.015000	0.407960	
mm_144989.1	chr18	38261920	38262120	+	1	NA	NA	NA	-11455	NR_027904	73516	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0.030000	0.522388	78(CTGCCTTAAAGG,-,0.00)
mm_115152.1	chr13	105898849	105899049	+	1	NA	NA	NA	455256	NM_008308	15550	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0.005000	0.398010	
mm_109519.1	chr12	111454352	111454552	+	1	NA	NA	NA	11791	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.005000	0.517413	
mm_91736.1	chr10	46505534	46505734	-	1	NA	NA	NA	260885	NR_028276	108637		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0.005000	0.393035	
mm_83655.1	chr9	49509787	49509987	-	1	NA	NA	NA	-8401	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.015000	0.557214	-91(CTGTTTATAGGG,-,0.00),-89(GTTTATAGGGCC,+,0.00)
mm_23883.1	chr3	83030951	83031151	+	1	NA	NA	NA	4898	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.025000	0.517413	-22(GTTTTAAGAGCC,+,0.00)
mm_105170.1	chr11	101784334	101784534	-	1	NA	NA	NA	876	NM_008815	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.080000	0.751244	
mm_92853.1	chr10	81524241	81524441	-	1	NA	NA	NA	-116	NM_010304	14676	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.015000	0.606965	
mm_150091.1	chr19	29454192	29454392	+	1	NA	NA	NA	43373	NM_021396	58205	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.010000	0.447761	
mm_137131.1	chr17	23600713	23600913	+	1	NA	NA	NA	-13	NM_001033425	332221	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	0.010000	0.527363	
mm_70900.1	chr8	25601599	25601799	+	1	NA	NA	NA	98	NM_001308481	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.095000	0.711443	
mm_127637.1	chr15	102473387	102473587	+	1	NA	NA	NA	2855	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.005000	0.467662	
mm_40138.1	chr5	35056978	35057178	+	1	NA	NA	NA	-6	NM_172708	231134	Mm.205483	NM_172708	ENSMUSG00000044716	Dok7	A930013K19Rik|AW049091|Dok-7|EF-12|Oit5	docking protein 7	protein-coding	0.155000	0.791045	
mm_8258.1	chr1	138856734	138856934	-	1	NA	NA	NA	20	NM_001081226	69549	Mm.264673	NM_001081226	ENSMUSG00000079283	2310009B15Rik	-	RIKEN cDNA 2310009B15 gene	protein-coding	0.100000	0.736318	
mm_120051.1	chr14	56647701	56647901	+	1	NA	NA	NA	-20447	NM_023773	75339	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	0.000000	0.587065	
mm_144623.1	chr18	32938699	32938899	+	1	NA	NA	NA	-242	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.025000	0.562189	-34(ATCCATATAAGC,-,0.00)
mm_100710.1	chr11	3774598	3774798	-	1	NA	NA	NA	-52471	NM_001302630	74309	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	0.105000	0.756219	
mm_63852.1	chr7	135662148	135662348	+	1	NA	NA	NA	-9934	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.000000	0.417910	
mm_141425.1	chr17	29437154	29437354	-	1	NA	NA	NA	-53791	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.060000	0.611940	
mm_56118.1	chr6	87532147	87532347	-	1	NA	NA	NA	1012	NM_001037727	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.020000	0.358209	
mm_109464.1	chr12	111271005	111271205	+	1	NA	NA	NA	9	NM_033603	93835	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0.060000	0.666667	
mm_69720.1	chr7	140300564	140300764	-	1	NA	NA	NA	-22037	NM_146956	258958	Mm.347648	NM_146956	ENSMUSG00000061489	Olfr525	MOR251-2	olfactory receptor 525	protein-coding	0.005000	0.358209	
mm_152878.1	chr19	24518478	24518678	-	1	NA	NA	NA	37249	NM_008846	18719	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	0.000000	0.492537	
mm_79369.1	chr9	54594992	54595192	+	1	NA	NA	NA	8581	NM_029573	67834	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	0.010000	0.487562	
mm_112924.1	chr13	20936295	20936495	+	1	NA	NA	NA	136904	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.005000	0.482587	
mm_18622.1	chr2	68472198	68472398	-	1	NA	NA	NA	-317	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.095000	0.671642	
mm_28092.1	chr3	85887300	85887500	-	1	NA	NA	NA	118	NM_177130	320302	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding	0.075000	0.691542	
mm_139752.1	chr17	63863947	63864147	+	1	NA	NA	NA	66	NM_001037997	14158	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.115000	0.696517	
mm_78632.1	chr9	40050271	40050471	+	1	NA	NA	NA	-187	NR_033613	72224	Mm.235535	NR_033613	ENSMUSG00000101963	1700001J11Rik	-	ring finger protein 19A pseudogene	pseudo	0.070000	0.616915	
mm_69673.1	chr7	139984464	139984664	-	1	NA	NA	NA	2310	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.015000	0.547264	
mm_74250.1	chr8	124831691	124831891	+	1	NA	NA	NA	31238	NM_025615	66523	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	0.025000	0.601990	
mm_133295.1	chr16	77500084	77500284	+	1	NA	NA	NA	-98752	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.030000	0.487562	
mm_119124.1	chr14	31134648	31134848	+	1	NA	NA	NA	-105	NM_027289	70021	Mm.261681	NM_027289	ENSMUSG00000071547	Nt5dc2	2510015F01Rik	5'-nucleotidase domain containing 2	protein-coding	0.040000	0.547264	
mm_68071.1	chr7	101868918	101869118	-	1	NA	NA	NA	1770	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.010000	0.522388	
mm_78176.1	chr9	21181498	21181698	+	1	NA	NA	NA	-2503	NM_001310750	18577	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.120000	0.741294	
mm_37021.1	chr4	114643024	114643224	-	1	NA	NA	NA	-178596	NR_033617	433746	Mm.388908	NR_033617	ENSMUSG00000055198	Gm12830	OTTMUSG00000008584	predicted gene 12830	ncRNA	0.000000	0.363184	
mm_7192.1	chr1	92919186	92919386	-	1	NA	NA	NA	8461	NM_181405	108657	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	0.040000	0.582090	
mm_27514.1	chr3	56183157	56183357	-	1	NA	NA	NA	444	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.175000	0.820896	
mm_39431.1	chr5	16553655	16553855	+	1	NA	NA	NA	-146	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.010000	0.502488	
mm_80781.1	chr9	95637639	95637839	+	1	NA	NA	NA	111	NM_029620	76477	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.120000	0.736318	
mm_2096.1	chr1	87716873	87717073	+	1	NA	NA	NA	-39038	NM_029846	77040	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.010000	0.437811	
mm_167180.1	chr7	141637170	141637370	-	1	NA	NA	NA	16569	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.010000	0.522388	
mm_146721.1	chr18	15064112	15064312	-	1	NA	NA	NA	-630	NM_001142731	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.085000	0.741294	
mm_101784.1	chr11	45955073	45955273	-	1	NA	NA	NA	15	NM_001290737	66628	Mm.269083	NM_001080969	ENSMUSG00000011254	Thg1l	-	tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	protein-coding	0.065000	0.537313	36(ATATTTAAAAGG,-,0.00)
mm_9817.1	chr1	182276401	182276601	-	1	NA	NA	NA	6258	NM_007853	13244	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.045000	0.437811	69(CTTTATTAAAGC,-,0.00)
mm_354.1	chr1	33669736	33669936	+	1	NA	NA	NA	12	NR_033199	67503	Mm.87069	NM_026204	ENSMUSG00000103746	1700001G17Rik	-	RIKEN cDNA 1700001G17 gene	ncRNA	0.100000	0.606965	
mm_123915.1	chr14	73362712	73362912	-	1	NA	NA	NA	22459	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.005000	0.333333	
mm_58194.1	chr6	143076016	143076216	-	1	NA	NA	NA	24036	NM_001286578	74741	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.000000	0.273632	
mm_24355.1	chr3	90052741	90052941	+	1	NA	NA	NA	39	NM_027500	99650	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	0.065000	0.512438	
mm_11317.1	chr2	30392183	30392383	+	1	NA	NA	NA	29	NM_001290508	57170	Mm.285167	NM_020329	ENSMUSG00000026856	Dolpp1	0610011H20Rik|AB030189|LSFR2	dolichyl pyrophosphate phosphatase 1	protein-coding	0.080000	0.606965	
mm_165121.1	chr2	3781730	3781930	+	1	NA	NA	NA	68372	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.005000	0.427861	
mm_4730.1	chr1	181352587	181352787	+	1	NA	NA	NA	59	NM_001160211	72978	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	0.120000	0.776119	
mm_119686.1	chr14	53443153	53443353	+	1	NA	NA	NA	810676	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.542289	
mm_52934.1	chr6	122933811	122934011	+	1	NA	NA	NA	12063	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.015000	0.417910	
mm_14759.1	chr2	144746524	144746724	+	1	NA	NA	NA	-77042	NM_025490	66328	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	0.000000	0.417910	-34(TGCCATTTAAGG,-,0.00),-32(CCATTTAAGGAA,+,0.00)
mm_41538.1	chr5	92856360	92856560	+	1	NA	NA	NA	-41533	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.045000	0.587065	-56(GTTTTTATAACC,+,0.00)
mm_166977.1	chr7	45128689	45128889	-	1	NA	NA	NA	-44	NM_009438	22121	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	0.085000	0.572139	
mm_71586.1	chr8	54954746	54954946	+	1	NA	NA	NA	118	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.030000	0.492537	
mm_75212.1	chr8	39605338	39605538	-	1	NA	NA	NA	37240	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.293532	32(AACTTTATAAGA,-,0.00)
mm_155945.1	chrX	104506591	104506791	+	1	NA	NA	NA	23909	NM_001081189	331487	Mm.438275	NM_001081189	ENSMUSG00000073016	Uprt	Gm774	uracil phosphoribosyltransferase	protein-coding	0.000000	0.363184	
mm_65010.1	chr7	17062305	17062505	-	1	NA	NA	NA	22	NM_001162950	53417	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0.060000	0.681592	
mm_60287.1	chr7	43979045	43979245	+	1	NA	NA	NA	3084	NM_010116	13648	Mm.440884	NM_010116	ENSMUSG00000059042	Klk1b9	EGF-BP C|Egfbp-3|Egfbp3|KAL|Klk9|kallikrein|mGk-9	kallikrein 1-related peptidase b9	protein-coding	0.010000	0.527363	
mm_83473.1	chr9	45787597	45787797	-	1	NA	NA	NA	40941	NM_001081373	214552	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	0.010000	0.522388	
mm_152855.1	chr19	24173976	24174176	-	1	NA	NA	NA	64	NM_001198985	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.160000	0.776119	
mm_171739.1	chr4	95509861	95510061	+	1	NA	NA	NA	-47546	NM_001113412	75578	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.060000	0.646766	
mm_39782.1	chr5	30159809	30160009	+	1	NA	NA	NA	4656	NM_001289798	231086	Mm.291463	NM_145558	ENSMUSG00000059447	Hadhb	4930479F15Rik|Mtpb|TP-beta	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit	protein-coding	0.020000	0.457711	
mm_126627.1	chr15	83394007	83394207	+	1	NA	NA	NA	-26810	NR_027980	69291	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0.000000	0.502488	
mm_147697.1	chr18	60793709	60793909	-	1	NA	NA	NA	-10040	NM_001042605	16149	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	0.010000	0.482587	
mm_88938.1	chr10	81297262	81297462	+	1	NA	NA	NA	4399	NM_001146687	18717	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.015000	0.462687	
mm_53623.1	chr6	140479715	140479915	+	1	NA	NA	NA	55716	NM_144920	109135	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.015000	0.477612	
mm_151721.1	chr19	4811504	4811704	-	1	NA	NA	NA	30	NM_001290127	102902673	Mm.426069	NM_001290127	ENSMUSG00000096370	Gm21992	Rbm14-rbm4	predicted gene 21992	protein-coding	0.100000	0.606965	
mm_114491.1	chr13	69809754	69809954	+	1	NA	NA	NA	-28	NM_138596	28077	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	0.100000	0.691542	
mm_157832.1	chrX	74246446	74246646	-	1	NA	NA	NA	-12	NM_001290421	192176	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	0.070000	0.601990	
mm_46785.1	chr5	112589896	112590096	-	1	NA	NA	NA	0	NR_045396	67325	Mm.490791	NR_045396	ENSMUSG00000097962	1700034G24Rik	-	RIKEN cDNA 1700034G24 gene	ncRNA	0.005000	0.572139	
mm_140001.1	chr17	72996654	72996854	+	1	NA	NA	NA	78449	NM_029999	77889	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.020000	0.497512	
mm_30980.1	chr4	34886600	34886800	+	1	NA	NA	NA	-3752	NM_013889	30046	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	0.075000	0.656716	
mm_47876.1	chr5	134688516	134688716	-	1	NA	NA	NA	-26	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.155000	0.786070	
mm_90671.1	chr10	128896141	128896341	+	1	NA	NA	NA	-4523	NM_010272	14561	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	0.015000	0.552239	
mm_15604.1	chr2	160699509	160699709	+	1	NA	NA	NA	-31701	NM_021280	18803	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.000000	0.363184	
mm_109707.1	chr12	113421958	113422158	+	1	NA	NA	NA	-67507	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.030000	0.517413	
mm_165410.1	chr2	144331343	144331543	+	1	NA	NA	NA	-81	NM_152947	107586	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0.105000	0.671642	
mm_122635.1	chr14	51146445	51146645	-	1	NA	NA	NA	222	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.015000	0.532338	
mm_122236.1	chr14	33247672	33247872	-	1	NA	NA	NA	30949	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.035000	0.592040	
mm_40251.1	chr5	38220421	38220621	+	1	NA	NA	NA	39	NM_025281	17089	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	0.155000	0.741294	
mm_120268.1	chr14	63122595	63122795	+	1	NA	NA	NA	233	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.085000	0.686567	
mm_43472.1	chr5	136694046	136694246	+	1	NA	NA	NA	-31	NM_001085387	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.015000	0.567164	
mm_41269.1	chr5	89101955	89102155	+	1	NA	NA	NA	214795	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.005000	0.407960	
mm_22703.1	chr3	18176241	18176441	+	1	NA	NA	NA	66997	NM_007825	13123	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	0.000000	0.288557	
mm_137356.1	chr17	25298296	25298496	+	1	NA	NA	NA	2	NM_178372	328780	Mm.127166	NM_178372	ENSMUSG00000056399	Prss34	C130091P12|Mcp11|mMcp-11	protease, serine 34	protein-coding	0.005000	0.522388	
mm_148097.1	chr18	73928588	73928788	-	1	NA	NA	NA	69303	NM_001305882	71263	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	0.005000	0.318408	
mm_120681.1	chr14	70635111	70635311	+	1	NA	NA	NA	837	NM_001252664	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.025000	0.562189	
mm_80958.1	chr9	103011407	103011607	+	1	NA	NA	NA	3018	NM_033314	24059	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	0.005000	0.452736	
mm_66469.1	chr7	44974621	44974821	-	1	NA	NA	NA	130	NM_153679	78070	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik	carnitine palmitoyltransferase 1c	protein-coding	0.030000	0.532338	
mm_140814.1	chr17	22866993	22867193	-	1	NA	NA	NA	41	NM_177358	240041	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	0.050000	0.557214	
mm_102778.1	chr11	68386837	68387037	-	1	NA	NA	NA	-111	NM_008744	18208	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0.155000	0.796020	
mm_45197.1	chr5	52471462	52471662	-	1	NA	NA	NA	-19	NM_001256059	100503884	Mm.332379	NM_001256059	ENSMUSG00000045790	Ccdc149	Gm447	coiled-coil domain containing 149	protein-coding	0.145000	0.815920	
mm_10052.1	chr1	193201410	193201610	-	1	NA	NA	NA	36	NM_153137	215243	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	0.010000	0.517413	
mm_158344.1	chrX	134162888	134163088	-	1	NA	NA	NA	-1060	NM_183319	331524	Mm.235055	NM_183319	ENSMUSG00000031258	Xkrx	A630026F04	X-linked Kx blood group related, X-linked	protein-coding	0.030000	0.577114	
mm_113238.1	chr13	27280231	27280431	+	1	NA	NA	NA	20842	NM_025896	67000	Mm.69279	NM_025896	ENSMUSG00000038883	Prl3a1	1600016E11Rik|Ghd9|PLP-H|PLP-I|Plpi|Prlpi	prolactin family 3, subfamily a, member 1	protein-coding	0.000000	0.253731	
mm_49324.1	chr6	18866289	18866489	+	1	NA	NA	NA	71	NM_001167757	75196	Mm.67665	NM_029202	ENSMUSG00000029517	Ankrd7	4930532L20Rik|AV278427	ankyrin repeat domain 7	protein-coding	0.015000	0.477612	
mm_1379.1	chr1	66705077	66705277	+	1	NA	NA	NA	4346	NM_001310644	66646	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0.030000	0.388060	19(GCTTTTCTGGTC,+,0.00)
mm_43853.1	chr5	143370011	143370211	+	1	NA	NA	NA	19	NM_001347529	170935	Mm.197460	NM_133355	ENSMUSG00000010825	Grid2ip	-	glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1	protein-coding	0.110000	0.711443	
mm_144699.1	chr18	34862586	34862786	+	1	NA	NA	NA	1479	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.055000	0.606965	
mm_87916.1	chr10	62494500	62494700	+	1	NA	NA	NA	-7795	NM_133672	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.000000	0.318408	81(CAGCATTAAAGC,-,0.00)
mm_52903.1	chr6	122761164	122761364	+	1	NA	NA	NA	-18519	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.045000	0.537313	
mm_49816.1	chr6	37143136	37143336	+	1	NA	NA	NA	156740	NM_001081206	320127	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.015000	0.457711	
mm_58295.1	chr6	145865299	145865499	-	1	NA	NA	NA	21	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.100000	0.641791	
mm_30195.1	chr3	144710540	144710740	-	1	NA	NA	NA	9695	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.005000	0.402985	
mm_110279.1	chr12	32060848	32061048	-	1	NA	NA	NA	331	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.110000	0.716418	
mm_144978.1	chr18	37955540	37955740	+	1	NA	NA	NA	81	NM_153793	225392	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	0.105000	0.686567	
mm_75017.1	chr8	30183865	30184065	-	1	NA	NA	NA	-384430	NR_045856	71314	Mm.158666	NR_045856	ENSMUSG00000097044	4933433F19Rik	-	RIKEN cDNA 4933433F19 gene	ncRNA	0.010000	0.477612	-34(ATGTATAAAGGG,-,0.00)
mm_40777.1	chr5	67260723	67260923	+	1	NA	NA	NA	258	NM_030108	67878	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	0.085000	0.651741	-100(GGCCCTTTAAGG,-,0.00),-99(GCCCTTTAAGGC,-,0.00),-98(CCCTTTAAGGCC,+,0.00)
mm_169033.1	chr13	12702224	12702424	+	1	NA	NA	NA	-51929	NR_003568	664862	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik|ENSMUSG00000075118	G protein-coupled receptor 137B, pseudogene	pseudo	0.070000	0.636816	
mm_168957.1	chr12	78351034	78351234	+	1	NA	NA	NA	124479	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.045000	0.472637	
mm_106581.1	chr11	120729476	120729676	-	1	NA	NA	NA	-2292	NM_001347608	67880	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	0.045000	0.532338	
mm_21989.1	chr2	167643052	167643252	-	1	NA	NA	NA	-11147	NM_023230	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.020000	0.507463	
mm_74686.1	chr8	14961482	14961682	-	1	NA	NA	NA	-49443	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.035000	0.517413	
mm_26409.1	chr3	142608132	142608332	+	1	NA	NA	NA	-12431	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.000000	0.437811	
mm_100645.1	chr11	3101185	3101385	-	1	NA	NA	NA	-22736	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.015000	0.368159	
mm_33011.1	chr4	120854682	120854882	+	1	NA	NA	NA	-23087	NM_182929	242662	Mm.192502	NM_182929	ENSMUSG00000032890	Rims3	A730060M23Rik|Nim3|Rim3|mKIAA0237	regulating synaptic membrane exocytosis 3	protein-coding	0.065000	0.686567	
mm_133273.1	chr16	77387824	77388024	+	1	NA	NA	NA	58596	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.000000	0.258706	
mm_154185.1	chr19	58794314	58794514	-	1	NA	NA	NA	0	NM_026208	67507	Mm.27027	NM_026208	ENSMUSG00000026931	1700019N19Rik	-	RIKEN cDNA 1700019N19 gene	protein-coding	0.030000	0.626866	
mm_73043.1	chr8	94329109	94329309	+	1	NA	NA	NA	1	NM_001205311	20497	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.025000	0.616915	-36(GCCTATAAAGCC,+,0.00)
mm_58871.1	chr7	16959727	16959927	+	1	NA	NA	NA	32	NM_001007569	71691	Mm.275673	NM_001007569	ENSMUSG00000041141	Pnmal1	0710005I19Rik	PNMA-like 1	protein-coding	0.030000	0.592040	
mm_44580.1	chr5	24842502	24842702	-	1	NA	NA	NA	-241	NM_053075	19744	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.115000	0.592040	52(CCCTTTAAAGTA,+,0.00)
mm_7836.1	chr1	132191925	132192125	-	1	NA	NA	NA	589	NM_001033250	213409	Mm.426321	NM_001033250	ENSMUSG00000079330	Lemd1	4930540I23Rik|6430514M23Rik|AI428128|LEMP-1	LEM domain containing 1	protein-coding	0.025000	0.557214	
mm_155963.1	chrX	106027176	106027376	+	1	NA	NA	NA	52	NM_009726	11977	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	0.090000	0.706468	
mm_19062.1	chr2	77466450	77466650	-	1	NA	NA	NA	3906	NR_040368	100503106	Mm.443215	NR_040368	ENSMUSG00000085845	Gm13944	OTTMUSG00000015155	predicted gene 13944	ncRNA	0.000000	0.393035	
mm_65564.1	chr7	27174464	27174664	-	1	NA	NA	NA	1529	NR_037283	100526505		NR_037283	ENSMUSG00000093348	Mir3101	mir-3101|mmu-mir-3101	microRNA 3101	ncRNA	0.045000	0.636816	
mm_24675.1	chr3	94837343	94837543	+	1	NA	NA	NA	-124	NM_001165948	229584	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	0.075000	0.676617	
mm_52863.1	chr6	122308598	122308798	+	1	NA	NA	NA	-312	NM_010749	17113	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	0.060000	0.582090	
mm_165958.1	chr4	87806250	87806450	-	1	NA	NA	NA	-27	NM_029931	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.015000	0.447761	
mm_48536.1	chr5	142904543	142904743	-	1	NA	NA	NA	2111	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.045000	0.611940	
mm_158226.1	chrX	106207998	106208198	-	1	NA	NA	NA	11744	NM_001001176	407786	Mm.19440	NM_001001176	ENSMUSG00000047242	Taf9b	BC066223|Taf9l	TATA-box binding protein associated factor 9B	protein-coding	0.010000	0.338308	
mm_154876.1	chrX	20688464	20688664	+	1	NA	NA	NA	138	NM_011049	18555	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	0.140000	0.746269	
mm_40498.1	chr5	57718186	57718386	+	1	NA	NA	NA	205	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.120000	0.626866	
mm_14877.1	chr2	148805922	148806122	+	1	NA	NA	NA	7183	NM_009978	13012	Mm.20435	NM_009978	ENSMUSG00000027442	Cst8	Cres|Cst-rs1	cystatin 8 (cystatin-related epididymal spermatogenic)	protein-coding	0.000000	0.383085	
mm_93458.1	chr10	110455865	110456065	-	1	NA	NA	NA	-144685	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA	0.170000	0.786070	
mm_45563.1	chr5	73209534	73209734	-	1	NA	NA	NA	46984	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.015000	0.363184	-3(TTCTCTATATGG,-,0.00)
mm_95354.1	chr11	48837339	48837539	+	1	NA	NA	NA	-32	NM_001347446	94089	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.050000	0.636816	
mm_98439.1	chr11	94939307	94939507	+	1	NA	NA	NA	3183	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.010000	0.487562	
mm_2449.1	chr1	100252526	100252726	+	1	NA	NA	NA	479861	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0.005000	0.467662	
mm_61922.1	chr7	90153514	90153714	+	1	NA	NA	NA	23382	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.010000	0.363184	
mm_51560.1	chr6	83353198	83353398	+	1	NA	NA	NA	3814	NM_175277	78653	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0.040000	0.552239	
mm_23650.1	chr3	67557429	67557629	+	1	NA	NA	NA	-25239	NM_025813	66868	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.050000	0.567164	
mm_88767.1	chr10	80335404	80335604	+	1	NA	NA	NA	5359	NM_139292	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.050000	0.691542	
mm_81922.1	chr9	120149641	120149841	+	1	NA	NA	NA	-1	NM_008614	17433	Mm.486167	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.030000	0.502488	
mm_114489.1	chr13	69802275	69802475	+	1	NA	NA	NA	-7507	NM_138596	28077	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	0.005000	0.507463	
mm_110977.1	chr12	77052741	77052941	-	1	NA	NA	NA	-90593	NM_001146176	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.010000	0.472637	
mm_143894.1	chr17	84543167	84543367	-	1	NA	NA	NA	31372	NM_177606	213556	Mm.215159	NM_177606	ENSMUSG00000040852	Plekhh2	AI256725|E030001K05|mKIAA2028	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	protein-coding	0.035000	0.442786	
mm_32941.1	chr4	119422724	119422924	+	1	NA	NA	NA	140	NM_001014900	332934	Mm.388911	NM_001014900	ENSMUSG00000070806	Zmynd12	AI414736	zinc finger, MYND domain containing 12	protein-coding	0.090000	0.666667	
mm_171190.1	chr3	44191523	44191723	-	1	NA	NA	NA	1186637	NR_045172	72511	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.015000	0.447761	-98(CCCTATAAGAGA,-,0.00)
mm_122868.1	chr14	54913009	54913209	-	1	NA	NA	NA	23	NM_021551	59049	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	0.060000	0.656716	
mm_85088.1	chr9	91385095	91385295	-	1	NA	NA	NA	16223	NM_009576	22774	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.010000	0.457711	
mm_119862.1	chr14	54468021	54468221	+	1	NA	NA	NA	3974	NM_022993	65107	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	0.030000	0.601990	
mm_34259.1	chr4	141420678	141420878	+	1	NA	NA	NA	-1	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.020000	0.502488	
mm_7292.1	chr1	97821344	97821544	-	1	NA	NA	NA	51272	NM_026250	252876	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding	0.000000	0.358209	
mm_40334.1	chr5	43910944	43911144	+	1	NA	NA	NA	42235	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.000000	0.283582	
mm_3349.1	chr1	138149095	138149295	+	1	NA	NA	NA	25931	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.015000	0.482587	-29(TCTTTTATGCTC,+,0.00)
mm_157904.1	chrX	77853423	77853623	-	1	NA	NA	NA	-23	NM_017471	54192	Mm.8034	NM_017471	ENSMUSG00000000003	Pbsn	PB|Prbs	probasin	protein-coding	0.015000	0.512438	-39(AACTATAAAAAG,-,0.00)
mm_102818.1	chr11	68973752	68973952	-	1	NA	NA	NA	3	NM_021329	57785	Mm.143774	NM_021329	ENSMUSG00000032892	Rangrf	2400006H24Rik|Mog1|Rangnrf	RAN guanine nucleotide release factor	protein-coding	0.060000	0.572139	
mm_168395.1	chr11	28353685	28353885	-	1	NA	NA	NA	230539	NM_001166661	216613	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	0.020000	0.577114	
mm_173015.1	chrM	594	794	+	1	NA	NA	NA	NA	NA									0.025000	0.398010	-19(GCCTATATACCG,+,0.00)
mm_161160.1	chr13	27196376	27196576	+	1	NA	NA	NA	-184	NM_013766	27372	Mm.291456	NM_013766	ENSMUSG00000017922	Prl3c1	Ghd7|PLP-J|Prlpi|Prlpj|decidualin	prolactin family 3, subfamily c, member 1	protein-coding	0.000000	0.373134	
mm_126736.1	chr15	85671170	85671370	+	1	NA	NA	NA	-32503	NR_110483	102800312	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0.145000	0.716418	
mm_35012.1	chr4	3574699	3574899	-	1	NA	NA	NA	-31	NM_028097	72098	Mm.441135	NM_028097	ENSMUSG00000028232	Tmem68	2010300G19Rik|AA408325|AW123402	transmembrane protein 68	protein-coding	0.100000	0.646766	
mm_167407.1	chr8	104442832	104443032	-	1	NA	NA	NA	115	NM_001013380	234663	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	0.150000	0.761194	
mm_54180.1	chr6	23839201	23839401	-	1	NA	NA	NA	120	NM_001252106	320405	Mm.259632	NM_153163	ENSMUSG00000017978	Cadps2	A230044C21Rik|Caps-2|Caps2|Cpd2	Ca2+-dependent activator protein for secretion 2	protein-coding	0.185000	0.776119	
mm_44095.1	chr5	149264947	149265147	+	1	NA	NA	NA	43	NM_009663	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.015000	0.587065	
mm_6133.1	chr1	64690528	64690728	-	1	NA	NA	NA	31	NR_038009	69941	Mm.69044	NR_038009	ENSMUSG00000087213	2810408I11Rik	-	RIKEN cDNA 2810408I11 gene	ncRNA	0.100000	0.661692	
mm_14986.1	chr2	152226457	152226657	+	1	NA	NA	NA	-283	NM_007788	12995	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0.075000	0.567164	
mm_87432.1	chr10	50907299	50907499	+	1	NA	NA	NA	11748	NM_011376	20464	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded homolog 1 (Drosophila)	protein-coding	0.000000	0.432836	-84(TTCTTTATAAAG,-,0.00),-82(CTTTATAAAGAG,+,0.00)
mm_68568.1	chr7	115697104	115697304	-	1	NA	NA	NA	104405	NM_001277328	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.010000	0.293532	
mm_39487.1	chr5	20945519	20945719	+	1	NA	NA	NA	-5370	NR_030699	320770	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.025000	0.472637	
mm_81943.1	chr9	120492407	120492607	+	1	NA	NA	NA	-99	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.180000	0.796020	
mm_118339.1	chr13	114398929	114399129	-	1	NA	NA	NA	-10935	NM_010887	17993	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	0.005000	0.477612	-28(GGTCCTATAAGG,-,0.00),-26(TCCTATAAGGGC,+,0.00)
mm_20308.1	chr2	127208182	127208382	-	1	NA	NA	NA	-2	NM_198630	329509	Mm.120738	NM_198630	ENSMUSG00000044145	1810024B03Rik	-	RIKEN cDNA 1810024B03 gene	protein-coding	0.080000	0.557214	
mm_164809.1	chr18	31903417	31903617	-	1	NA	NA	NA	8386	NM_026006	67158	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	0.020000	0.427861	
mm_109442.1	chr12	110840929	110841129	+	1	NA	NA	NA	-90	NM_011973	26448	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0.095000	0.572139	-33(GGGTTTAAAAAC,-,0.00)
mm_153393.1	chr19	40405683	40405883	-	1	NA	NA	NA	-3473	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.015000	0.497512	71(GCATTAATAGCA,+,0.00)
mm_163816.1	chr14	19416365	19416565	+	1	NA	NA	NA	186122	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.015000	0.343284	
mm_114363.1	chr13	61995192	61995392	+	1	NA	NA	NA	-134598	NM_001039239	630579	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 80	protein-coding	0.010000	0.368159	
mm_98767.1	chr11	96639084	96639284	+	1	NA	NA	NA	138371	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.000000	0.482587	
mm_25309.1	chr3	106034698	106034898	+	1	NA	NA	NA	-1903	NM_001080816	229687	Mm.39224	NM_170594	ENSMUSG00000043873	Chil5	Bclp|Bclp1|Bclp2|Chi3l7	chitinase-like 5	protein-coding	0.000000	0.328358	
mm_153743.1	chr19	44696846	44697046	-	1	NA	NA	NA	-60448	NM_011037	18504	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0.035000	0.606965	
mm_81037.1	chr9	105018304	105018504	+	1	NA	NA	NA	-34864	NM_053159	94062	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	0.015000	0.378109	
mm_15586.1	chr2	160210690	160210890	+	1	NA	NA	NA	116704	NM_001033411	329554	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.010000	0.522388	
mm_39192.1	chr4	155985219	155985419	-	1	NA	NA	NA	7359	NM_080445	117592	Mm.440185	NM_080445	ENSMUSG00000050796	B3galt6	BB129894|GalTII	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	protein-coding	0.010000	0.512438	
mm_107846.1	chr12	69371957	69372157	+	1	NA	NA	NA	-93	NM_007481	11845	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.175000	0.751244	
mm_72499.1	chr8	83740400	83740600	+	1	NA	NA	NA	811	NM_001163029	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.020000	0.467662	
mm_11883.1	chr2	49619210	49619410	+	1	NA	NA	NA	-4	NM_008449	16574	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding	0.105000	0.716418	
mm_81383.1	chr9	108936950	108937150	+	1	NA	NA	NA	402	NM_025407	22273	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	0.065000	0.641791	
mm_160485.1	chr8	125492678	125492878	-	1	NA	NA	NA	-68	NM_001081337	244668	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.035000	0.487562	
mm_142486.1	chr17	45746748	45746948	-	1	NA	NA	NA	-13004	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0.030000	0.611940	
mm_8698.1	chr1	158355142	158355342	-	1	NA	NA	NA	1018	NM_207583	240843	Mm.329579	NM_207583	ENSMUSG00000004031	Brinp2	6430517E21Rik|BB361039|Fam5b|mKIAA1747	bone morphogenic protein/retinoic acid inducible neural-specific 2	protein-coding	0.020000	0.432836	
mm_84272.1	chr9	62794905	62795105	-	1	NA	NA	NA	16643	NM_010193	14155	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.000000	0.348259	
mm_41632.1	chr5	97048782	97048982	+	1	NA	NA	NA	51193	NM_080708	140780	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.015000	0.442786	
mm_149459.1	chr19	11518500	11518700	+	1	NA	NA	NA	41	NM_027209	69774	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	0.010000	0.532338	
mm_112308.1	chr12	114829646	114829846	-	1	NA	NA	NA	-316052	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.388060	-35(GTGTTTAAAAAC,-,0.00)
mm_31237.1	chr4	44705345	44705545	+	1	NA	NA	NA	2645	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0.015000	0.527363	-32(CTCTTTAAAAAG,-,0.00),-30(CTTTAAAAAGGG,+,0.00)
mm_8728.1	chr1	160060545	160060745	-	1	NA	NA	NA	16265	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.025000	0.487562	
mm_71861.1	chr8	69017554	69017754	+	1	NA	NA	NA	-71082	NM_007509	11966	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0.015000	0.497512	-50(GCCTATAAAATG,-,0.00)
mm_51750.1	chr6	87428982	87429182	+	1	NA	NA	NA	88	NM_009756	12154	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	-	bone morphogenetic protein 10	protein-coding	0.030000	0.577114	
mm_142554.1	chr17	46629637	46629837	-	1	NA	NA	NA	-233	NM_175168	71461	Mm.181833	NM_175168	ENSMUSG00000023972	Ptk7	8430404F20Rik|chz|mPTK7/CCK4	PTK7 protein tyrosine kinase 7	protein-coding	0.020000	0.527363	
mm_19758.1	chr2	105126435	105126635	-	1	NA	NA	NA	6	NM_144783	22431	Mm.389339	NM_144783	ENSMUSG00000016458	Wt1	D630046I19Rik|Wt-1	Wilms tumor 1 homolog	protein-coding	0.060000	0.656716	
mm_43316.1	chr5	134957710	134957910	+	1	NA	NA	NA	-10876	NM_009903	12740	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	0.005000	0.517413	
mm_17709.1	chr2	32385419	32385619	-	1	NA	NA	NA	2220	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.020000	0.527363	
mm_131839.1	chr16	22960868	22961068	+	1	NA	NA	NA	9896	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.010000	0.542289	
mm_164830.1	chr18	37807850	37808050	-	1	NA	NA	NA	1540	NM_033581	93706	Mm.247203	NM_033581	ENSMUSG00000102918	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding	0.060000	0.527363	
mm_144325.1	chr18	12955713	12955913	+	1	NA	NA	NA	-13972	NM_207530	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.040000	0.547264	
mm_142327.1	chr17	43502628	43502828	-	1	NA	NA	NA	45	NM_008585	17287	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	0.025000	0.457711	-35(GTTTTTATGGCA,+,0.00)
mm_75244.1	chr8	39642559	39642759	-	1	NA	NA	NA	19	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.338308	
mm_101175.1	chr11	16992874	16993074	-	1	NA	NA	NA	15744	NM_019549	56193	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.010000	0.442786	
mm_159953.1	chr6	86365624	86365824	+	1	NA	NA	NA	41	NM_025591	66488	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	0.095000	0.686567	
mm_142313.1	chr17	42876447	42876647	-	1	NA	NA	NA	-123	NM_009847	12488	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.125000	0.761194	
mm_5296.1	chr1	21256407	21256607	-	1	NA	NA	NA	15922	NM_010356	14859	Mm.394593	NM_010356	ENSMUSG00000025934	Gsta3	Gst2-3	glutathione S-transferase, alpha 3	protein-coding	0.005000	0.616915	
mm_106138.1	chr11	116490184	116490384	-	1	NA	NA	NA	62	NM_026364	67763	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	0.150000	0.751244	
mm_34628.1	chr4	150570111	150570311	+	1	NA	NA	NA	81963	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.025000	0.412935	
mm_56930.1	chr6	119517857	119518057	-	1	NA	NA	NA	26390	NM_009525	22419	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0.000000	0.293532	
mm_113655.1	chr13	42680470	42680670	+	1	NA	NA	NA	-229	NM_001302635	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.010000	0.447761	
mm_148996.1	chr19	8663983	8664183	+	1	NA	NA	NA	78	NM_001112697	12669	Mm.240607	NM_007698	ENSMUSG00000032773	Chrm1	Chrm-1|M1|M1R	cholinergic receptor, muscarinic 1, CNS	protein-coding	0.015000	0.572139	
mm_72310.1	chr8	77554360	77554560	+	1	NA	NA	NA	5063	NM_001081240	102182	Mm.197630	NM_178903	ENSMUSG00000037134	Prmt9	AI931714|Prmt10	protein arginine methyltransferase 9	protein-coding	0.005000	0.298507	
mm_98861.1	chr11	97703325	97703525	+	1	NA	NA	NA	-9	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	0.055000	0.562189	
mm_21440.1	chr2	158625150	158625350	-	1	NA	NA	NA	337	NM_175419	109275	Mm.27747	NM_175419	ENSMUSG00000037761	Actr5	AA545173|B430109J19Rik	ARP5 actin-related protein 5	protein-coding	0.150000	0.751244	
mm_112537.1	chr13	9684196	9684396	+	1	NA	NA	NA	79514	NM_001347471	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.030000	0.487562	
mm_31971.1	chr4	88157596	88157796	+	1	NA	NA	NA	35656	NR_030478	735282		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	0.005000	0.457711	
mm_1768.1	chr1	77065772	77065972	+	1	NA	NA	NA	430896	NR_105770	102465180		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.015000	0.402985	
mm_74425.1	chr8	3670425	3670625	-	1	NA	NA	NA	4763	NM_026985	69189	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0.010000	0.552239	
mm_109643.1	chr12	112809209	112809409	+	1	NA	NA	NA	334	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.060000	0.626866	
mm_138966.1	chr17	44736114	44736314	+	1	NA	NA	NA	-38	NM_001271631	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.155000	0.756219	
mm_84293.1	chr9	63281166	63281366	-	1	NA	NA	NA	96586	NM_011840	23938	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	0.010000	0.507463	
mm_41653.1	chr5	98329224	98329424	+	1	NA	NA	NA	20	NM_001024614	75784	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	0.105000	0.681592	
mm_172282.1	chr6	90905483	90905683	+	1	NA	NA	NA	-95460	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.100000	0.587065	
mm_139930.1	chr17	71022769	71022969	+	1	NA	NA	NA	3312	NM_001083934	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.030000	0.502488	
mm_49965.1	chr6	40740321	40740521	+	1	NA	NA	NA	111590	NM_001171003	232714	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding	0.005000	0.422886	
mm_24804.1	chr3	95556052	95556252	+	1	NA	NA	NA	-3525	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.010000	0.323383	-76(CTTTTTATAGTT,+,0.00)
mm_133782.1	chr16	95010965	95011165	+	1	NA	NA	NA	-13369	NM_010606	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.015000	0.398010	
mm_170078.1	chr17	33824391	33824591	-	1	NA	NA	NA	7	NM_016844	54127	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	0.090000	0.592040	-37(GACTATAAAAGG,-,0.00)
mm_93294.1	chr10	96391608	96391808	-	1	NA	NA	NA	165501	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.010000	0.472637	
mm_88879.1	chr10	81118042	81118242	+	1	NA	NA	NA	12227	NM_001347144	26396	Mm.275436	NM_023138	ENSMUSG00000035027	Map2k2	AA589381|MEK2|MK2|Prkmk2	mitogen-activated protein kinase kinase 2	protein-coding	0.010000	0.562189	
mm_135047.1	chr16	33186163	33186363	-	1	NA	NA	NA	1192	NM_176840	106326	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.015000	0.422886	
mm_94414.1	chr11	5861826	5862026	+	1	NA	NA	NA	60	NM_001291857	11568	Mm.3317	NM_009636	ENSMUSG00000020473	Aebp1	ACLP	AE binding protein 1	protein-coding	0.085000	0.726368	
mm_136406.1	chr16	93712326	93712526	-	1	NA	NA	NA	519	NM_027293	70028	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0.045000	0.577114	-34(AGCTTTTAAAGG,-,0.00),-33(GCTTTTAAAGGT,+,0.00),-32(CTTTTAAAGGTG,+,0.00)
mm_149890.1	chr19	25406672	25406872	+	1	NA	NA	NA	-98934	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.045000	0.567164	
mm_28179.1	chr3	88000755	88000955	-	1	NA	NA	NA	-499	NM_001109758	12032	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0.040000	0.621891	
mm_146547.1	chr18	6135963	6136163	-	1	NA	NA	NA	35	NM_029277	75415	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0.085000	0.676617	
mm_48787.1	chr5	148590661	148590861	-	1	NA	NA	NA	-37973	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.025000	0.547264	
mm_160278.1	chr7	121051973	121052173	+	1	NA	NA	NA	17628	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.020000	0.427861	
mm_11479.1	chr2	32385331	32385531	+	1	NA	NA	NA	2308	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.020000	0.547264	
mm_128266.1	chr15	36791149	36791349	-	1	NA	NA	NA	-317	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.010000	0.393035	10(GTCCATATATGC,-,0.00)
mm_12935.1	chr2	85060867	85061067	+	1	NA	NA	NA	10507	NM_001081260	228140	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	0.030000	0.686567	
mm_166351.1	chr5	119881174	119881374	+	1	NA	NA	NA	46611	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.010000	0.492537	
mm_60521.1	chr7	44479853	44480053	+	1	NA	NA	NA	-4564	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.522388	
mm_150967.1	chr19	46500531	46500731	+	1	NA	NA	NA	-1017	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.030000	0.442786	
mm_125967.1	chr15	76274134	76274334	+	1	NA	NA	NA	-4395	NR_045747	100038659	Mm.448549	NR_045747		Mirt2	ENSMUSG00000075583|Gm10872|Gm24562	myocardial infraction associated transcript 2	ncRNA	0.005000	0.502488	
mm_66706.1	chr7	45921333	45921533	-	1	NA	NA	NA	-7	NM_010129	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.025000	0.532338	-36(GGATATAAAAGG,-,0.00),64(GGGTATTAAAGG,-,0.00)
mm_90354.1	chr10	127165220	127165420	+	1	NA	NA	NA	164	NM_001244617	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.115000	0.711443	
mm_84424.1	chr9	65771349	65771549	-	1	NA	NA	NA	56115	NM_172536	214812	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	0.005000	0.487562	
mm_65825.1	chr7	29178885	29179085	-	1	NA	NA	NA	1688	NM_026545	57296	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	0.015000	0.572139	
mm_141505.1	chr17	31636514	31636714	-	1	NA	NA	NA	591	NM_144855	12411	Mm.206417	NM_144855	ENSMUSG00000024039	Cbs	AI047524|AI303044|HIP4	cystathionine beta-synthase	protein-coding	0.070000	0.606965	
mm_63107.1	chr7	122633067	122633267	+	1	NA	NA	NA	-38577	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.005000	0.472637	
mm_172703.1	chr8	64293630	64293830	-	1	NA	NA	NA	-87737	NM_009390	21892	Mm.418367	NM_009390	ENSMUSG00000053626	Tll1	Tll|Tll-1	tolloid-like	protein-coding	0.025000	0.562189	
mm_11790.1	chr2	43128639	43128839	+	1	NA	NA	NA	-426586	NM_001289593	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.015000	0.527363	
mm_59783.1	chr7	28881614	28881814	+	1	NA	NA	NA	58	NM_001110807	60594	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	0.035000	0.606965	84(GCTCTTTAAAGG,-,0.00),85(CTCTTTAAAGGC,+,0.00),85(CTCTTTAAAGGC,-,0.00),86(TCTTTAAAGGCC,+,0.00)
mm_84783.1	chr9	76362070	76362270	-	1	NA	NA	NA	-38592	NM_198962	387285	Mm.335300	NM_198962	ENSMUSG00000032360	Hcrtr2	OX2R|mOX2aR|mOX2bR|mOXR2	hypocretin (orexin) receptor 2	protein-coding	0.000000	0.417910	
mm_76256.1	chr8	83740052	83740252	-	1	NA	NA	NA	1159	NM_001163029	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.005000	0.512438	
mm_2224.1	chr1	90564074	90564274	+	1	NA	NA	NA	-39251	NM_133805	108679	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	0.005000	0.457711	
mm_151367.1	chr19	55930372	55930572	+	1	NA	NA	NA	35151	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.000000	0.442786	-12(TCTTTAAGGGGG,+,0.00)
mm_126209.1	chr15	78892367	78892567	+	1	NA	NA	NA	627	NR_105920	102466210		NR_105920	ENSMUSG00000099267	Mir6955	Gm27769|mmu-mir-6955	microRNA 6955	ncRNA	0.035000	0.621891	
mm_19216.1	chr2	84648459	84648659	-	1	NA	NA	NA	1951	NM_001085453	12388	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.025000	0.507463	
mm_171804.1	chr5	126074712	126074912	+	1	NA	NA	NA	542394	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0.015000	0.328358	
mm_140348.1	chr17	86831022	86831222	+	1	NA	NA	NA	77258	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.030000	0.597015	
mm_95758.1	chr11	54906208	54906408	+	1	NA	NA	NA	3454	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.005000	0.597015	
mm_17080.1	chr2	22913780	22913980	-	1	NA	NA	NA	18358	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.025000	0.427861	
mm_4863.1	chr1	187662280	187662480	+	1	NA	NA	NA	53374	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.020000	0.537313	
mm_2957.1	chr1	132865718	132865918	+	1	NA	NA	NA	-14537	NM_010732	16980	Mm.39640	NM_010732	ENSMUSG00000026443	Lrrn2	5730406J09Rik|NLRR-2	leucine rich repeat protein 2, neuronal	protein-coding	0.010000	0.432836	
mm_117459.1	chr13	75920700	75920900	-	1	NA	NA	NA	23024	NM_028493	73296	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	0.010000	0.402985	
mm_40892.1	chr5	75152186	75152386	+	1	NA	NA	NA	35	NM_001347718	18595	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.020000	0.447761	
mm_74603.1	chr8	11678641	11678841	-	1	NA	NA	NA	9	NM_024271	76413	Mm.440041	NM_024271	ENSMUSG00000031509	1700016D06Rik	-	RIKEN cDNA 1700016D06 gene	protein-coding	0.020000	0.537313	
mm_27413.1	chr3	51396440	51396640	-	1	NA	NA	NA	7	NM_026358	67749	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	0.090000	0.711443	
mm_109600.1	chr12	112679443	112679643	+	1	NA	NA	NA	703	NM_001100460	382639	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0.120000	0.656716	
mm_45495.1	chr5	72162969	72163169	-	1	NA	NA	NA	5114	NM_178599	27784	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.020000	0.457711	71(CTTTTTATAGTT,+,0.00)
mm_150822.1	chr19	44511103	44511303	+	1	NA	NA	NA	17731	NM_011720	22423	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	0.030000	0.562189	20(CCTTTTCAGGGG,+,0.00)
mm_134632.1	chr16	21668208	21668408	-	1	NA	NA	NA	26357	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.005000	0.348259	
mm_46383.1	chr5	103977310	103977510	-	1	NA	NA	NA	-22	NM_001163486	243168	Mm.284944	NM_198030	ENSMUSG00000034528	Hsd17b13	AI047820|PAN1B-like|Pan1b	hydroxysteroid (17-beta) dehydrogenase 13	protein-coding	0.010000	0.512438	
mm_74884.1	chr8	25101608	25101808	-	1	NA	NA	NA	103	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.055000	0.636816	
mm_68360.1	chr7	106511522	106511722	-	1	NA	NA	NA	-70549	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.477612	
mm_84079.1	chr9	58201971	58202171	-	1	NA	NA	NA	214	NM_177193	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.055000	0.532338	-34(GTGTTTAAAGGC,-,0.00)
mm_8367.1	chr1	150503051	150503251	-	1	NA	NA	NA	-36986	NM_001110146	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.005000	0.358209	
mm_147914.1	chr18	65565682	65565882	-	1	NA	NA	NA	-14448	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.035000	0.587065	
mm_120397.1	chr14	64675335	64675535	+	1	NA	NA	NA	22904	NM_001081177	16554	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.005000	0.323383	
mm_20794.1	chr2	144254673	144254873	-	1	NA	NA	NA	11429	NR_030762	100313519	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.010000	0.402985	
mm_131606.1	chr16	19218517	19218717	+	1	NA	NA	NA	68124	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.005000	0.368159	
mm_80434.1	chr9	77923577	77923777	+	1	NA	NA	NA	6312	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.015000	0.447761	55(GACCTTATAAGG,-,0.00),57(CCTTATAAGGTA,+,0.00)
mm_144566.1	chr18	31775752	31775952	+	1	NA	NA	NA	-13307	NM_027002	69241	Mm.279898	NM_027002	ENSMUSG00000024258	Polr2d	2310002G05Rik|2610028L19Rik|HSRBP4|RBP4	polymerase (RNA) II (DNA directed) polypeptide D	protein-coding	0.005000	0.353234	
mm_69417.1	chr7	132599503	132599703	-	1	NA	NA	NA	34	NM_009123	20231	Mm.334281	NM_009123	ENSMUSG00000048528	Nkx1-2	Nkx-1.1|Nkx-1.2|Sax1	NK1 transcription factor related, locus 2 (Drosophila)	protein-coding	0.080000	0.686567	
mm_11836.1	chr2	45111058	45111258	+	1	NA	NA	NA	20	NR_110572	433424	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|OTTMUSG00000012358|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0.045000	0.552239	11(GGCTATAAAAGA,-,0.00)
mm_65270.1	chr7	23947195	23947395	-	1	NA	NA	NA	-5092	NM_206869	232962	Mm.377249	NM_206869	ENSMUSG00000092473	Vmn1r180	Gm475|V1rd16	vomeronasal 1 receptor 180	protein-coding	0.020000	0.507463	
mm_15669.1	chr2	163419699	163419899	+	1	NA	NA	NA	-329	NM_025699	66680	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	0.070000	0.601990	
mm_169662.1	chr15	59370048	59370248	-	1	NA	NA	NA	4004	NM_153548	223593	Mm.218665	NM_153548	ENSMUSG00000022350	Washc5	AL022848|C76463|E430025E21Rik|Kiaa0196|mKIAA0196|strumpellin	WASH complex subunit 5	protein-coding	0.010000	0.442786	-35(TCTTTAATGGAG,+,0.00)
mm_42953.1	chr5	123016135	123016335	+	1	NA	NA	NA	1161	NM_175423	109305	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.010000	0.547264	-32(CCCTTGAAAGGG,-,0.00)
mm_130240.1	chr15	96597465	96597665	-	1	NA	NA	NA	44397	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.025000	0.507463	
mm_134134.1	chr16	10683190	10683390	-	1	NA	NA	NA	102246	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.000000	0.502488	
mm_14185.1	chr2	127080143	127080343	+	1	NA	NA	NA	9586	NM_026678	109778	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0.010000	0.422886	
mm_91282.1	chr10	24711896	24712096	-	1	NA	NA	NA	163	NM_001308327	18605	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	0.145000	0.771144	-33(GCCTATTAAAGC,-,0.00)
mm_80509.1	chr9	78634139	78634339	+	1	NA	NA	NA	18693	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.000000	0.517413	
mm_59495.1	chr7	27533559	27533759	+	1	NA	NA	NA	10398	NM_001033315	233020	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.020000	0.552239	
mm_162332.1	chr1	43098602	43098802	+	1	NA	NA	NA	-8	NM_133818	98404	Mm.28817	NM_133818	ENSMUSG00000010290	AI597479	-	expressed sequence AI597479	protein-coding	0.115000	0.676617	
mm_119112.1	chr14	31019041	31019241	+	1	NA	NA	NA	3	NM_001081251	66923	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	0.130000	0.741294	
mm_21806.1	chr2	165034453	165034653	-	1	NA	NA	NA	226	NM_144892	228869	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	0.155000	0.771144	
mm_13425.1	chr2	104590441	104590641	+	1	NA	NA	NA	57	NM_001037326	228410	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	0.075000	0.587065	81(CCTTTTCTAGCT,+,0.00)
mm_100478.1	chr11	120217143	120217343	+	1	NA	NA	NA	-15704	NM_001347621	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.020000	0.522388	
mm_16739.1	chr2	9375835	9376035	-	1	NA	NA	NA	186420	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.000000	0.502488	
mm_144498.1	chr18	24397323	24397523	+	1	NA	NA	NA	31747	NR_029573	387182		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0.020000	0.462687	-32(CTTTAAATACCC,+,0.00)
mm_29362.1	chr3	108562331	108562531	-	1	NA	NA	NA	35	NM_026198	67495	Mm.32615	NM_026198	ENSMUSG00000068732	Tmem167b	2010200O16Rik	transmembrane protein 167B	protein-coding	0.115000	0.621891	
mm_146967.1	chr18	33463329	33463529	-	1	NA	NA	NA	205	NM_001267717	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.015000	0.552239	
mm_21746.1	chr2	164804756	164804956	-	1	NA	NA	NA	25	NM_133240	170789	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	0.095000	0.611940	-8(GCCTATATAAGT,-,0.00)
mm_161649.1	chr17	6449016	6449216	-	1	NA	NA	NA	1878	NR_033520	547127	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	0.020000	0.552239	
mm_75647.1	chr8	65100992	65101192	-	1	NA	NA	NA	28445	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA	0.005000	0.417910	
mm_120230.1	chr14	62865225	62865425	+	1	NA	NA	NA	-217	NR_105860	102465311		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.015000	0.487562	
mm_43273.1	chr5	130448746	130448946	+	1	NA	NA	NA	54	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.015000	0.606965	
mm_44348.1	chr5	17785772	17785972	-	1	NA	NA	NA	50024	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.343284	
mm_90924.1	chr10	12813465	12813665	-	1	NA	NA	NA	48170	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.020000	0.492537	-91(GACTTTAAAAAA,-,0.00)
mm_172909.1	chr9	61914278	61914478	-	1	NA	NA	NA	132	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.115000	0.651741	
mm_146566.1	chr18	6490788	6490988	-	1	NA	NA	NA	-31	NM_027497	13831	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1 (Drosophila)	protein-coding	0.150000	0.711443	
mm_51721.1	chr6	86870712	86870912	+	1	NA	NA	NA	21295	NM_001040106	269774	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	0.010000	0.388060	
mm_105076.1	chr11	100803755	100803955	-	1	NA	NA	NA	18715	NM_011489	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.005000	0.407960	
mm_113673.1	chr13	42741587	42741787	+	1	NA	NA	NA	32106	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.000000	0.472637	
mm_171432.1	chr4	136456554	136456754	-	1	NA	NA	NA	-13107	NM_024452	269593	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	0.005000	0.527363	-35(GCTTTAAGACCC,+,0.00)
mm_57298.1	chr6	124464628	124464828	-	1	NA	NA	NA	56	NM_153508	232370	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.030000	0.572139	
mm_152727.1	chr19	18631741	18631941	-	1	NA	NA	NA	-28	NM_017375	20409	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.110000	0.711443	
mm_162253.1	chrX	164980514	164980714	+	1	NA	NA	NA	22	NM_175027	237211	Mm.336317	NM_175027	ENSMUSG00000047757	Fancb	BC022692	Fanconi anemia, complementation group B	protein-coding	0.040000	0.626866	
mm_862.1	chr1	52139184	52139384	+	1	NA	NA	NA	19662	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.015000	0.502488	-50(CAGCTTAAAAAG,-,0.00),-48(GCTTAAAAAGCT,+,0.00)
mm_127372.1	chr15	100783711	100783911	+	1	NA	NA	NA	2557	NM_001347102	59033	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0.025000	0.487562	
mm_42890.1	chr5	122391860	122392060	+	1	NA	NA	NA	82	NM_019824	56378	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.105000	0.641791	
mm_170356.1	chr1	85199557	85199757	+	1	NA	NA	NA	46	NM_001081746	665378	Mm.440912	NM_001081746		Gm7609	EG665378	predicted pseudogene 7609	protein-coding	0.005000	0.582090	
mm_135801.1	chr16	57231372	57231572	-	1	NA	NA	NA	-6	NM_026254	67581	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.065000	0.542289	
mm_165562.1	chr3	14886510	14886710	+	1	NA	NA	NA	184	NM_009801	12349	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0.080000	0.681592	49(GCCTATAAAAGC,-,0.00)
mm_19232.1	chr2	84691906	84692106	-	1	NA	NA	NA	-13178	NM_025868	66958	Mm.371621	NM_025868	ENSMUSG00000050043	Tmx2	2310042M24Rik|AA589631|Txndc14	thioredoxin-related transmembrane protein 2	protein-coding	0.020000	0.442786	
mm_72474.1	chr8	83576120	83576320	+	1	NA	NA	NA	9462	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.025000	0.646766	
mm_7879.1	chr1	133019337	133019537	-	1	NA	NA	NA	5979	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	0.000000	0.393035	
mm_172069.1	chr6	136685415	136685615	-	1	NA	NA	NA	-23622	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.025000	0.557214	
mm_44605.1	chr5	25100958	25101158	-	1	NA	NA	NA	83	NR_027851	67261	Mm.461781	NM_026059	ENSMUSG00000043833	2900005J15Rik	-	RIKEN cDNA 2900005J15 gene	ncRNA	0.090000	0.661692	
mm_103385.1	chr11	75415593	75415793	-	1	NA	NA	NA	6930	NM_011340	20317	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.025000	0.537313	
mm_162815.1	chr10	79710016	79710216	+	1	NA	NA	NA	5758	NM_009768	12215	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	0.030000	0.606965	
mm_6195.1	chr1	65175037	65175237	-	1	NA	NA	NA	4005	NM_010497	15926	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.000000	0.278607	
mm_26071.1	chr3	136670124	136670324	+	1	NA	NA	NA	158	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.180000	0.776119	
mm_114154.1	chr13	55401092	55401292	+	1	NA	NA	NA	1544	NM_011392	20505	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	0.015000	0.572139	
mm_151137.1	chr19	52264858	52265058	+	1	NA	NA	NA	661	NM_008386	16333	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding	0.025000	0.482587	
mm_145686.1	chr18	61687817	61688017	+	1	NA	NA	NA	-18	NM_019508	56069	Mm.59313	NM_019508	ENSMUSG00000024578	Il17b	1110006O16Rik|1700006N07Rik|Zcyto7	interleukin 17B	protein-coding	0.030000	0.651741	
mm_148088.1	chr18	73734751	73734951	-	1	NA	NA	NA	19628	NM_053255	114615	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	0.005000	0.412935	-33(CCTTATAAATAA,+,0.00)
mm_98163.1	chr11	87737485	87737685	+	1	NA	NA	NA	20	NM_009296	20922	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0.080000	0.606965	
mm_80114.1	chr9	70542685	70542885	+	1	NA	NA	NA	7	NM_026337	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.130000	0.776119	
mm_147905.1	chr18	65393604	65393804	-	1	NA	NA	NA	184	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.020000	0.457711	
mm_150528.1	chr19	39229164	39229364	+	1	NA	NA	NA	10	NR_033614	638988	Mm.483843	NR_033614	ENSMUSG00000093610	Cyp2c53-ps	Cyp2c53|EG638988	cytochrome P450, family 2, subfamily c, polypeptide 53-ps	pseudo	0.000000	0.417910	
mm_132125.1	chr16	31754489	31754689	+	1	NA	NA	NA	239	NM_001252436	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.020000	0.417910	
mm_119431.1	chr14	46173099	46173299	+	1	NA	NA	NA	89172	NR_002875	218963	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	0.015000	0.412935	-34(CATTATAAAAGC,-,0.00)
mm_62992.1	chr7	120552967	120553167	+	1	NA	NA	NA	-44558	NR_024324	78552	Mm.289190	NR_024324	ENSMUSG00000044141	E130201H02Rik	-	Y box protein 1 pseudogene	pseudo	0.025000	0.527363	
mm_126054.1	chr15	76949450	76949650	+	1	NA	NA	NA	1006	NM_054099	117171	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0.025000	0.467662	
mm_23791.1	chr3	79568207	79568407	+	1	NA	NA	NA	-628	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.050000	0.542289	
mm_121767.1	chr14	19873207	19873407	-	1	NA	NA	NA	34382	NR_105025	52512	Mm.483998	NR_105025		D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.005000	0.323383	
mm_131780.1	chr16	22895217	22895417	+	1	NA	NA	NA	-931	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.035000	0.492537	
mm_116126.1	chr13	28952470	28952670	-	1	NA	NA	NA	1112	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.115000	0.696517	
mm_33393.1	chr4	129820134	129820334	+	1	NA	NA	NA	-245	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.205000	0.825871	
mm_99610.1	chr11	104581563	104581763	+	1	NA	NA	NA	-19465	NR_130177	100415912	Mm.446786	NR_130177		Gm11665	Gm11664|OTTMUSG00000003182|OTTMUSG00000003183	predicted gene 11665	ncRNA	0.050000	0.447761	
mm_130826.1	chr15	101845876	101846076	-	1	NA	NA	NA	4810	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.050000	0.621891	
mm_145029.1	chr18	39251734	39251934	+	1	NA	NA	NA	235411	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.010000	0.482587	
mm_108665.1	chr12	86470089	86470289	+	1	NA	NA	NA	48545	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.075000	0.631841	
mm_163285.1	chr11	117654631	117654831	+	1	NA	NA	NA	442	NM_198022	217351	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.095000	0.696517	
mm_123333.1	chr14	63070545	63070745	-	1	NA	NA	NA	15572	NR_046019	72609	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.015000	0.482587	
mm_148570.1	chr19	4859142	4859342	+	1	NA	NA	NA	4113	NM_019861	56464	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	0.015000	0.552239	
mm_48969.1	chr6	4747266	4747466	+	1	NA	NA	NA	60	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.085000	0.616915	-32(CTCTATATAAGG,-,0.00)
mm_135076.1	chr16	34262908	34263108	-	1	NA	NA	NA	251019	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.040000	0.611940	
mm_138476.1	chr17	35194800	35195000	+	1	NA	NA	NA	-72	NR_105939	102465588		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	0.015000	0.542289	
mm_71305.1	chr8	41330593	41330793	+	1	NA	NA	NA	44004	NM_019734	11886	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	0.010000	0.343284	
mm_140474.1	chr17	94750033	94750233	+	1	NA	NA	NA	33	NR_024720	77022	Mm.440259	NR_024720	ENSMUSG00000098090	2700099C18Rik	9430041D22Rik	NDC80 homolog, kinetochore complex component pseudogene	pseudo	0.110000	0.582090	
mm_86937.1	chr10	24447370	24447570	+	1	NA	NA	NA	-147972	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.010000	0.487562	
mm_97052.1	chr11	72451068	72451268	+	1	NA	NA	NA	9790	NM_016776	18432	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	0.000000	0.562189	
mm_132853.1	chr16	48218991	48219191	+	1	NA	NA	NA	-64644	NM_028610	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding	0.020000	0.432836	
mm_159859.1	chr5	139907766	139907966	+	1	NA	NA	NA	-77	NM_175522	243312	Mm.237102	NM_175522	ENSMUSG00000048988	Elfn1	A930017N06Rik|AI197272|Ppp1r28	leucine rich repeat and fibronectin type III, extracellular 1	protein-coding	0.045000	0.611940	
mm_69687.1	chr7	139990400	139990600	-	1	NA	NA	NA	2062	NM_007403	11501	Mm.15969	NM_007403	ENSMUSG00000025473	Adam8	ADAM 8|CD156|CD156a|E430039A18Rik|MS2	a disintegrin and metallopeptidase domain 8	protein-coding	0.010000	0.457711	
mm_120594.1	chr14	70076831	70077031	+	1	NA	NA	NA	-514	NM_018781	13655	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.070000	0.641791	-90(GTCCATATATGG,-,0.00),-88(CCATATATGGGC,+,0.00)
mm_139232.1	chr17	47731365	47731565	+	1	NA	NA	NA	4623	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.020000	0.512438	
mm_157942.1	chrX	85776468	85776668	-	1	NA	NA	NA	251	NM_001294140	14933	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	0.080000	0.656716	
mm_172361.1	chr7	11949718	11949918	+	1	NA	NA	NA	-18533	NM_134205	171239	Mm.377195	NM_134205	ENSMUSG00000045713	Vmn1r76	V1rg4	vomeronasal 1 receptor 76	protein-coding	0.030000	0.507463	-31(GTCTATTTAAGG,-,0.00),-29(CTATTTAAGGAC,+,0.00)
mm_37380.1	chr4	120975370	120975570	-	1	NA	NA	NA	-2148	NR_105982	102465614		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.025000	0.447761	
mm_168889.1	chr1	24614711	24614911	-	1	NA	NA	NA	-27374	NM_007733	12823	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.010000	0.298507	
mm_157023.1	chrX	7790303	7790503	-	1	NA	NA	NA	410	NM_207670	54645	Mm.194811	NM_207670	ENSMUSG00000031153	Gripap1	AI854681|DXImx47e|GRASP-1|Sfc10|mKIAA1167	GRIP1 associated protein 1	protein-coding	0.020000	0.462687	10(TCCTTTAAAGTC,+,0.00)
mm_102109.1	chr11	53265917	53266117	-	1	NA	NA	NA	34462	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.015000	0.398010	
mm_156653.1	chrX	157702753	157702953	+	1	NA	NA	NA	3880	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.015000	0.432836	
mm_92376.1	chr10	76388792	76388992	-	1	NA	NA	NA	-123	NR_040580	67523	Mm.437833	NR_040580	ENSMUSG00000101695	1700094J05Rik	-	RIKEN cDNA 1700094J05 gene	ncRNA	0.040000	0.641791	
mm_141002.1	chr17	24936849	24937049	-	1	NA	NA	NA	28	NM_001163448	30957	Mm.43081	NM_013931	ENSMUSG00000024163	Mapk8ip3	BB120594|D17Wsu15e|JIP-3|JSAP1|JSAP1a|JSAP1b|JSAP1c|JSAP1d|Jip3|Syd2|mKIAA1066	mitogen-activated protein kinase 8 interacting protein 3	protein-coding	0.135000	0.731343	
mm_149383.1	chr19	11381810	11382010	+	1	NA	NA	NA	6422	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.005000	0.388060	
mm_63898.1	chr7	138940631	138940831	+	1	NA	NA	NA	1	NM_028708	74004	Mm.334298	NM_028708		Jakmip3	6330417G02Rik|AI593226|mKIAA4091	janus kinase and microtubule interacting protein 3	protein-coding	0.150000	0.776119	
mm_67238.1	chr7	75308314	75308514	-	1	NA	NA	NA	-28	NM_001109753	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.045000	0.512438	
mm_33897.1	chr4	136247872	136248072	+	1	NA	NA	NA	15	NM_011542	21401	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	0.095000	0.701493	
mm_112973.1	chr13	21287153	21287353	+	1	NA	NA	NA	5433	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.000000	0.427861	68(CAGTCTTTAAGG,-,0.00),70(GTCTTTAAGGGG,-,0.00),71(TCTTTAAGGGGG,+,0.00)
mm_43029.1	chr5	123930570	123930770	+	1	NA	NA	NA	-19	NM_001134767	208908	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|Gm150	coiled-coil domain containing 62	protein-coding	0.135000	0.676617	
mm_140601.1	chr17	10319207	10319407	-	1	NA	NA	NA	54	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.185000	0.781095	
mm_102743.1	chr11	67253966	67254166	-	1	NA	NA	NA	16254	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.020000	0.542289	
mm_161549.1	chr16	10192708	10192908	+	1	NA	NA	NA	-98	NM_153123	75329	Mm.108729	NM_029253	ENSMUSG00000039200	Atf7ip2	4930558K11Rik|BC018510|Get-1|PSM2	activating transcription factor 7 interacting protein 2	protein-coding	0.070000	0.646766	
mm_132961.1	chr16	50478841	50479041	+	1	NA	NA	NA	-46475	NM_001347240	70508	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.000000	0.502488	59(CAGTTTAAAAGG,-,0.00)
mm_31077.1	chr4	41465047	41465247	+	1	NA	NA	NA	-1	NM_025539	66401	Mm.28574	NM_025539	ENSMUSG00000028443	Nudt2	2310051L06Rik|AA939917|APAH1	nudix (nucleoside diphosphate linked moiety X)-type motif 2	protein-coding	0.085000	0.676617	
mm_29010.1	chr3	101604552	101604752	-	1	NA	NA	NA	55	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.135000	0.726368	
mm_2210.1	chr1	89659249	89659449	+	1	NA	NA	NA	24543	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.000000	0.407960	
mm_130832.1	chr15	101846792	101846992	-	1	NA	NA	NA	3894	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.010000	0.512438	
mm_114422.1	chr13	64422336	64422536	+	1	NA	NA	NA	-10117	NM_053180	105278	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	0.010000	0.507463	
mm_12730.1	chr2	78869031	78869231	+	1	NA	NA	NA	84	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.170000	0.800995	
mm_114915.1	chr13	95009919	95010119	+	1	NA	NA	NA	33675	NM_172590	218460	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.010000	0.547264	
mm_115408.1	chr13	114447357	114447557	+	1	NA	NA	NA	11494	NM_001301373	14313	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	0.005000	0.487562	
mm_167823.1	chr9	124423146	124423346	+	1	NA	NA	NA	-5	NR_027950	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.110000	0.681592	
mm_172632.1	chr8	20424705	20424905	-	1	NA	NA	NA	9	NR_028428	381598	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	0.085000	0.646766	
mm_117176.1	chr13	63288404	63288604	-	1	NA	NA	NA	8643	NR_045794	100504114	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	0.015000	0.542289	
mm_117697.1	chr13	94328006	94328206	-	1	NA	NA	NA	30817	NR_045619	328309	Mm.174191	NM_183205		Gm9776	A530089L17|ENSMUSG00000042857	predicted gene 9776	ncRNA	0.010000	0.442786	
mm_4880.1	chr1	187956719	187956919	+	1	NA	NA	NA	-41008	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.010000	0.363184	
mm_40946.1	chr5	76822399	76822599	+	1	NA	NA	NA	-18100	NM_001163793	320827	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.030000	0.492537	-7(CCTTTTAAGAAG,+,0.00)
mm_34136.1	chr4	139291068	139291268	+	1	NA	NA	NA	19532	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.050000	0.502488	
mm_158188.1	chrX	104413741	104413941	-	1	NA	NA	NA	5	NM_009592	11306	Mm.426128	NM_009592	ENSMUSG00000031333	Abcb7	AA517758|AU019072|Abc7	ATP-binding cassette, sub-family B (MDR/TAP), member 7	protein-coding	0.110000	0.621891	
mm_62901.1	chr7	116546799	116546999	+	1	NA	NA	NA	42530	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.000000	0.348259	
mm_40494.1	chr5	57717444	57717644	+	1	NA	NA	NA	375	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	0.105000	0.631841	
mm_28943.1	chr3	99253406	99253606	-	1	NA	NA	NA	-254	NM_009323	21384	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0.020000	0.442786	
mm_96994.1	chr11	70700413	70700613	+	1	NA	NA	NA	-35	NM_153103	16562	Mm.99996	NM_153103	ENSMUSG00000020821	Kif1c	B430105J22Rik|D11Bwg1349e|Ltxs1|Orch3	kinesin family member 1C	protein-coding	0.195000	0.860697	
mm_103386.1	chr11	75415626	75415826	-	1	NA	NA	NA	6897	NM_011340	20317	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.030000	0.522388	
mm_86010.1	chr9	112233461	112233661	-	1	NA	NA	NA	-716	NR_033432	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA	0.020000	0.437811	
mm_95991.1	chr11	59116360	59116560	+	1	NA	NA	NA	19915	NM_001171512	380698	Mm.339542	NM_199152	ENSMUSG00000061462	Obscn	BC046431|Gm878|OTTMUSG00000005786|UNC89	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein-coding	0.015000	0.512438	
mm_48086.1	chr5	136987589	136987789	-	1	NA	NA	NA	270	NM_027318	70103	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	0.090000	0.681592	
mm_150260.1	chr19	34192722	34192922	+	1	NA	NA	NA	552	NM_029682	76630	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.055000	0.606965	
mm_139895.1	chr17	70852318	70852518	+	1	NA	NA	NA	-684	NM_001164075	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.050000	0.522388	
mm_45398.1	chr5	66151565	66151765	-	1	NA	NA	NA	289	NM_001127382	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.040000	0.582090	
mm_158626.1	chrX	153036472	153036672	-	1	NA	NA	NA	991	NM_023788	75625	Mm.6890	NM_023788	ENSMUSG00000047238	Mageh1	2010107K23Rik|APR-1|APR1	melanoma antigen, family H, 1	protein-coding	0.000000	0.402985	
mm_169864.1	chr16	33844429	33844629	+	1	NA	NA	NA	14864	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.010000	0.407960	
mm_87760.1	chr10	60284366	60284566	+	1	NA	NA	NA	5	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.030000	0.492537	
mm_51819.1	chr6	89000518	89000718	+	1	NA	NA	NA	-95492	NR_134978	232217	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	0.025000	0.512438	
mm_163508.1	chr12	113140613	113140813	+	1	NA	NA	NA	108	NM_001347443	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.115000	0.661692	
mm_151602.1	chr19	3554795	3554995	-	1	NA	NA	NA	20854	NM_001164159	52036	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.030000	0.422886	
mm_167227.1	chr8	13055751	13055951	+	1	NA	NA	NA	-5057	NM_025834	66901	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.015000	0.522388	
mm_92945.1	chr10	85102356	85102556	-	1	NA	NA	NA	39	NM_010214	14202	Mm.46163	NM_010214	ENSMUSG00000050035	Fhl4	-	four and a half LIM domains 4	protein-coding	0.095000	0.681592	
mm_117092.1	chr13	59796718	59796918	-	1	NA	NA	NA	26329	NM_153538	214290	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.045000	0.497512	
mm_119778.1	chr14	54179554	54179754	+	1	NA	NA	NA	74275	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.402985	
mm_54793.1	chr6	41636299	41636499	-	1	NA	NA	NA	6	NM_022413	64177	Mm.296889	NM_022413	ENSMUSG00000029868	Trpv6	CAT|CaT1|Cac|Ecac2|Otrpc3	transient receptor potential cation channel, subfamily V, member 6	protein-coding	0.010000	0.562189	
mm_87696.1	chr10	59702493	59702693	+	1	NA	NA	NA	30	NM_001291443	216001	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0.085000	0.636816	
mm_83407.1	chr9	44801685	44801885	-	1	NA	NA	NA	1166	NM_138951	192653	Mm.325487	NM_138951	ENSMUSG00000039438	Ttc36	-	tetratricopeptide repeat domain 36	protein-coding	0.010000	0.557214	
mm_112147.1	chr12	113259588	113259788	-	1	NA	NA	NA	73785	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.005000	0.532338	
mm_171404.1	chr4	126046960	126047160	+	1	NA	NA	NA	132	NM_025544	66407	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	0.120000	0.701493	
mm_74826.1	chr8	23165847	23166047	-	1	NA	NA	NA	12676	NM_029002	74561	Mm.290028	NM_029002	ENSMUSG00000063672	Nkx6-3	9130417I07Rik|Nkx6.3	NK6 homeobox 3	protein-coding	0.035000	0.611940	
mm_60523.1	chr7	44479929	44480129	+	1	NA	NA	NA	-4488	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.512438	
mm_102047.1	chr11	52000354	52000554	-	1	NA	NA	NA	12	NM_009458	22210	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	2610301N02Rik|E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0.115000	0.716418	
mm_117910.1	chr13	99430417	99430617	-	1	NA	NA	NA	-17691	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.025000	0.467662	
mm_168368.1	chr1	11783671	11783871	-	1	NA	NA	NA	369666	NM_001160371	320492	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding	0.040000	0.542289	
mm_13363.1	chr2	103454170	103454370	+	1	NA	NA	NA	30202	NM_010125	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.000000	0.368159	-52(TTGCTTATAAGG,-,0.00),-50(GCTTATAAGGAC,+,0.00)
mm_7969.1	chr1	134060713	134060913	-	1	NA	NA	NA	18342	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.020000	0.512438	78(CCTTTAATACTT,+,0.00)
mm_144282.1	chr18	11839444	11839644	+	1	NA	NA	NA	-167	NR_045421	621998	Mm.353277	NR_045421		Gm6277	-	predicted gene 6277	ncRNA	0.160000	0.716418	
mm_64824.1	chr7	10656873	10657073	-	1	NA	NA	NA	23386	NM_134228	171262	Mm.222634	NM_134228	ENSMUSG00000045340	Vmn1r70	V1rd2|V1rl1	vomeronasal 1 receptor 70	protein-coding	0.060000	0.497512	
mm_30523.1	chr3	158562145	158562345	-	1	NA	NA	NA	-24	NM_001081358	242274	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding	0.105000	0.726368	
mm_64904.1	chr7	16044396	16044596	-	1	NA	NA	NA	-27349	NM_001347559	666528	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.005000	0.522388	
mm_168977.1	chr12	91473253	91473453	-	1	NA	NA	NA	72360	NM_011648	22095	Mm.173847	NM_011648	ENSMUSG00000020963	Tshr	AI481368|hypothroid|hyt|pet	thyroid stimulating hormone receptor	protein-coding	0.030000	0.547264	
mm_137426.1	chr17	26252892	26253092	+	1	NA	NA	NA	82	NR_037905	66978	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	0.100000	0.661692	
mm_36999.1	chr4	110292403	110292603	-	1	NA	NA	NA	-4976	NM_001347178	15572	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein-coding	0.015000	0.447761	-33(TCTTTAAAACCC,+,0.00)
mm_90106.1	chr10	117224157	117224357	+	1	NA	NA	NA	250	NM_026570	64050	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0.115000	0.681592	
mm_61214.1	chr7	64287558	64287758	+	1	NA	NA	NA	-12	NM_172742	233315	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0.120000	0.721393	
mm_146521.1	chr18	4352853	4353053	-	1	NA	NA	NA	0	NM_007746	26410	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.075000	0.661692	
mm_100979.1	chr11	7208319	7208519	-	1	NA	NA	NA	5504	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding	0.050000	0.597015	
mm_5165.1	chr1	10039912	10040112	-	1	NA	NA	NA	1794	NM_026493	211660	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	0.130000	0.786070	
mm_152133.1	chr19	7020999	7021199	-	1	NA	NA	NA	-1630	NM_153795	108101	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.030000	0.497512	
mm_35749.1	chr4	45489174	45489374	-	1	NA	NA	NA	41554	NM_001033306	230126	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0.030000	0.621891	
mm_55839.1	chr6	83156270	83156470	-	1	NA	NA	NA	9	NM_023790	75659	Mm.130665	NM_023790	ENSMUSG00000030032	Wdr54	1700030E05Rik	WD repeat domain 54	protein-coding	0.095000	0.671642	
mm_159451.1	chr3	144696879	144697079	-	1	NA	NA	NA	23356	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.015000	0.462687	
mm_113250.1	chr13	27559219	27559419	+	1	NA	NA	NA	5287	NM_001316721	67310	Mm.46091	NM_023332	ENSMUSG00000006490	Prl8a9	1600019F10Rik|Ghd15|PLP-C2|PLP-Cbeta|Prlpc2	prolactin family8, subfamily a, member 9	protein-coding	0.010000	0.383085	
mm_83311.1	chr9	44046908	44047108	-	1	NA	NA	NA	3624	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.010000	0.437811	
mm_42984.1	chr5	123253579	123253779	+	1	NA	NA	NA	25489	NM_026000	67151	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0.020000	0.477612	
mm_82936.1	chr9	35210876	35211076	-	1	NA	NA	NA	79	NM_172291	235169	Mm.138512	NM_172291	ENSMUSG00000039048	Foxred1	BC024806|TEG-23|Tex23	FAD-dependent oxidoreductase domain containing 1	protein-coding	0.080000	0.626866	
mm_113500.1	chr13	37483316	37483516	+	1	NA	NA	NA	138071	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.040000	0.597015	
mm_145666.1	chr18	61220377	61220577	+	1	NA	NA	NA	-22	NM_146086	225600	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	0.015000	0.502488	
mm_167513.1	chr9	13827280	13827480	-	1	NA	NA	NA	-273	NM_026665	74360	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding	0.025000	0.492537	
mm_29590.1	chr3	119709512	119709712	-	1	NA	NA	NA	73776	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.075000	0.517413	
mm_67142.1	chr7	73375633	73375833	-	1	NA	NA	NA	41	NR_040325	319783	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.110000	0.756219	
mm_20502.1	chr2	130424201	130424401	-	1	NA	NA	NA	-13	NM_178762	319513	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	0.100000	0.646766	
mm_90780.1	chr10	6980251	6980451	-	1	NA	NA	NA	-70	NM_001347225	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.010000	0.467662	
mm_103410.1	chr11	75454546	75454746	-	1	NA	NA	NA	71	NM_138950	192652	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0.085000	0.646766	
mm_130858.1	chr15	102188843	102189043	-	1	NA	NA	NA	100	NM_144942	246277	Mm.296382	NM_144942	ENSMUSG00000023044	Csad	Csd	cysteine sulfinic acid decarboxylase	protein-coding	0.030000	0.552239	
mm_140070.1	chr17	75005613	75005813	+	1	NA	NA	NA	184	NM_019919	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.090000	0.746269	
mm_154864.1	chrX	20662830	20663030	+	1	NA	NA	NA	34	NM_001136085	22201	Mm.1104	NM_009457	ENSMUSG00000001924	Uba1	A1S9|Sbx|Ube-1|Ube1x	ubiquitin-like modifier activating enzyme 1	protein-coding	0.055000	0.626866	
mm_1697.1	chr1	75142719	75142919	+	1	NA	NA	NA	33	NM_001305231	227298	Mm.273062	NM_170755	ENSMUSG00000049339	Fam134a	-	family with sequence similarity 134, member A	protein-coding	0.155000	0.746269	
mm_165225.1	chr2	52319158	52319358	-	1	NA	NA	NA	19540	NM_010889	17996	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	0.005000	0.532338	68(CACTTTAAGAGC,-,0.00)
mm_145572.1	chr18	60911893	60912093	+	1	NA	NA	NA	-247	NM_001038499	545260	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	0.060000	0.641791	
mm_79816.1	chr9	64293913	64294113	+	1	NA	NA	NA	12428	NM_001324557	66131	Mm.196219	NM_025372	ENSMUSG00000032397	Tipin	1110005A05Rik|1110018P21Rik	timeless interacting protein	protein-coding	0.015000	0.417910	-84(GCCTTTAAATGC,+,0.00),-84(GCCTTTAAATGC,-,0.00)
mm_27714.1	chr3	68633538	68633738	-	1	NA	NA	NA	-57006	NM_001159424	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.010000	0.378109	
mm_109332.1	chr12	109571589	109571789	+	1	NA	NA	NA	-301	NR_030438	751547		NR_030438	ENSMUSG00000076316	Mir673	Mirn673|mir-673|mmu-mir-673	microRNA 673	ncRNA	0.010000	0.482587	
mm_130924.1	chr15	102722056	102722256	-	1	NA	NA	NA	22	NM_026192	67488	Mm.71682	NM_026192	ENSMUSG00000023055	Calcoco1	1810009B06Rik|Cocoa|Gcap11|mKIAA1536	calcium binding and coiled coil domain 1	protein-coding	0.050000	0.572139	
mm_49684.1	chr6	33289563	33289763	+	1	NA	NA	NA	40513	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.020000	0.318408	
mm_112463.1	chr13	5867613	5867813	+	1	NA	NA	NA	6224	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.000000	0.328358	
mm_64831.1	chr7	12818769	12818969	-	1	NA	NA	NA	-9	NM_026046	67230	Mm.333574	NM_026046	ENSMUSG00000057894	Zfp329	2810439M05Rik|4632409L22Rik|ZNF329	zinc finger protein 329	protein-coding	0.075000	0.611940	
mm_25151.1	chr3	102995649	102995849	+	1	NA	NA	NA	9	NM_025679	66641	Mm.33937	NM_025679	ENSMUSG00000027854	Sike1	2810005O12Rik|5730470L24Rik|AI450236|AI839862|Sike|Sikeb	suppressor of IKBKE 1	protein-coding	0.110000	0.641791	-48(CGCCTTTAAAGT,-,0.00),-47(GCCTTTAAAGTG,+,0.00),-46(CCTTTAAAGTGC,+,0.00)
mm_171023.1	chr2	84505289	84505489	+	1	NA	NA	NA	1484	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	0.040000	0.482587	12(CTCTTTAAAGAG,+,0.00),12(CTCTTTAAAGAG,-,0.00),14(CTTTAAAGAGGG,+,0.00)
mm_83840.1	chr9	54419507	54419707	-	1	NA	NA	NA	82019	NM_172771	235380	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.005000	0.447761	
mm_19024.1	chr2	76961606	76961806	-	1	NA	NA	NA	20841	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.015000	0.402985	
mm_123168.1	chr14	57375991	57376191	-	1	NA	NA	NA	22392	NM_030004	68631	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.030000	0.517413	
mm_40381.1	chr5	52368683	52368883	+	1	NA	NA	NA	4979	NM_011435	20657	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	0.070000	0.661692	
mm_114219.1	chr13	56426518	56426718	+	1	NA	NA	NA	-11737	NM_177809	328258	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	0.005000	0.557214	
mm_120202.1	chr14	61680879	61681079	+	1	NA	NA	NA	1394	NR_028264	668253	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.035000	0.532338	-96(ACCTATAAATAG,-,0.00),-36(GCTCTTAAGGAC,+,0.00)
mm_146764.1	chr18	17018880	17019080	-	1	NA	NA	NA	-16528	NR_130158	75433	Mm.60907	NR_130158	ENSMUSG00000087170	1700001G01Rik	-	RIKEN cDNA 1700001G01 gene	ncRNA	0.005000	0.532338	13(CACTATAAAAGT,-,0.00)
mm_7275.1	chr1	97128180	97128380	-	1	NA	NA	NA	23	NM_028942	74441	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	0.020000	0.477612	
mm_85503.1	chr9	106199118	106199318	-	1	NA	NA	NA	15	NM_026447	67905	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	0.125000	0.786070	
mm_51902.1	chr6	91110503	91110703	+	1	NA	NA	NA	6223	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.025000	0.472637	
mm_74074.1	chr8	122443547	122443747	+	1	NA	NA	NA	-9	NR_045696	100689703	Mm.271989	NR_045696		9330133O14Rik	-	RIKEN cDNA 9330133O14 gene	ncRNA	0.070000	0.641791	
mm_18609.1	chr2	68366428	68366628	-	1	NA	NA	NA	105453	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.015000	0.552239	
mm_4747.1	chr1	182163215	182163415	+	1	NA	NA	NA	-5217	NM_001166728	625823	Mm.479992	NM_001166728	ENSMUSG00000091013	Vmn1r1	EG625823|Gm6628	vomeronasal 1 receptor 1	protein-coding	0.000000	0.452736	
mm_28094.1	chr3	85887386	85887586	-	1	NA	NA	NA	32	NM_177130	320302	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding	0.090000	0.751244	
mm_154875.1	chrX	20688407	20688607	+	1	NA	NA	NA	81	NM_011049	18555	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	0.140000	0.736318	
mm_8843.1	chr1	162702120	162702320	-	1	NA	NA	NA	38336	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.010000	0.398010	
mm_76532.1	chr8	87943473	87943673	-	1	NA	NA	NA	16022	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	0.020000	0.582090	
mm_68783.1	chr7	123286803	123287003	-	1	NA	NA	NA	72037	NM_146198	233836	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.030000	0.656716	
mm_134859.1	chr16	28445758	28445958	-	1	NA	NA	NA	217	NM_183064	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.070000	0.606965	
mm_170024.1	chr17	21650511	21650711	+	1	NA	NA	NA	0	NM_001166497	73229	Mm.296733	NM_001166497	ENSMUSG00000035868	Zfp983	3110052M02Rik|mszf57|mszf71	zinc finger protein 983	protein-coding	0.025000	0.562189	
mm_130619.1	chr15	100227641	100227841	-	1	NA	NA	NA	-118	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.145000	0.786070	
mm_40544.1	chr5	58030050	58030250	+	1	NA	NA	NA	312069	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.005000	0.398010	
mm_136530.1	chr16	97504804	97505004	-	1	NA	NA	NA	32	NM_020622	52793	Mm.327932	NM_020622	ENSMUSG00000022938	Fam3b	2-21|9030624C24Rik|D16Jhu19e|ORF9|Pander	family with sequence similarity 3, member B	protein-coding	0.010000	0.522388	
mm_75156.1	chr8	36248002	36248202	-	1	NA	NA	NA	1414	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.075000	0.676617	
mm_170044.1	chr17	24665914	24666114	+	1	NA	NA	NA	-3738	NM_183149	213753	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	0.030000	0.457711	
mm_30907.1	chr4	32424642	32424842	+	1	NA	NA	NA	7307	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.015000	0.477612	
mm_26362.1	chr3	142554819	142555019	+	1	NA	NA	NA	-5133	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.005000	0.547264	-35(CACTATAAAAGG,-,0.00)
mm_114971.1	chr13	97241006	97241206	+	1	NA	NA	NA	1	NM_007930	13803	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.140000	0.731343	
mm_157898.1	chrX	77837871	77838071	-	1	NA	NA	NA	15529	NM_017471	54192	Mm.8034	NM_017471	ENSMUSG00000000003	Pbsn	PB|Prbs	probasin	protein-coding	0.010000	0.313433	
mm_10991.1	chr2	26315393	26315593	+	1	NA	NA	NA	-40	NM_001199146	67839	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	0.130000	0.771144	
mm_37710.1	chr4	129490960	129491160	-	1	NA	NA	NA	-130	NM_001085491	68233	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0.045000	0.621891	
mm_17293.1	chr2	26208187	26208387	-	1	NA	NA	NA	-38	NM_010711	16871	Mm.386765	NM_010711	ENSMUSG00000026934	Lhx3	Lim3|P-LIM|mLIM3|mLim-3	LIM homeobox protein 3	protein-coding	0.050000	0.671642	
mm_58677.1	chr7	12478204	12478404	+	1	NA	NA	NA	-1	NM_001039951	67370	Mm.98929	NM_026112	ENSMUSG00000030386	Zfp606	2410022M24Rik|AW494727	zinc finger protein 606	protein-coding	0.090000	0.582090	
mm_107891.1	chr12	70459770	70459970	+	1	NA	NA	NA	6716	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0.000000	0.442786	
mm_42344.1	chr5	114909803	114910003	+	1	NA	NA	NA	12969	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.020000	0.427861	
mm_108735.1	chr12	88360469	88360669	+	1	NA	NA	NA	55	NM_001277297	72113	Mm.181387	NM_028105	ENSMUSG00000021044	Adck1	2610005A10Rik	aarF domain containing kinase 1	protein-coding	0.080000	0.626866	
mm_54098.1	chr6	16837510	16837710	-	1	NA	NA	NA	60831	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.000000	0.343284	25(TTCTCTTAAAAG,-,0.00)
mm_151215.1	chr19	53639248	53639448	+	1	NA	NA	NA	-37958	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.000000	0.298507	
mm_101500.1	chr11	32136026	32136226	-	1	NA	NA	NA	-34898	NR_130637	104692	Mm.414035	NR_130637	ENSMUSG00000086386	Gm12108	BB052462|OTTMUSG00000005365	predicted gene 12108	ncRNA	0.020000	0.522388	
mm_9799.1	chr1	181853048	181853248	-	1	NA	NA	NA	-10747	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.020000	0.587065	
mm_68103.1	chr7	102017540	102017740	-	1	NA	NA	NA	515	NM_010531	16068	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.020000	0.477612	
mm_171938.1	chr5	66248562	66248762	-	1	NA	NA	NA	-11236	NM_001302833	70918	Mm.23166	NM_027602	ENSMUSG00000029206	Nsun7	4921525L17Rik	NOL1/NOP2/Sun domain family, member 7	protein-coding	0.025000	0.462687	-45(GTGTATAAAAGT,-,0.00)
mm_101575.1	chr11	34313762	34313962	-	1	NA	NA	NA	-960	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.005000	0.452736	
mm_128314.1	chr15	37960826	37961026	-	1	NA	NA	NA	129	NM_199476	382985	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.100000	0.656716	
mm_6272.1	chr1	69662691	69662891	-	1	NA	NA	NA	23169	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.010000	0.298507	
mm_114497.1	chr13	69959778	69959978	+	1	NA	NA	NA	45	NR_138559	67550	Mm.158159	NR_138559		4933416O17Rik	-	RIKEN cDNA 4933416O17 gene	ncRNA	0.005000	0.422886	
mm_76273.1	chr8	84133978	84134178	-	1	NA	NA	NA	8089	NM_001013384	244550	Mm.334654	NM_001013384	ENSMUSG00000012889	Podnl1	5832418A03Rik|Gm506	podocan-like 1	protein-coding	0.020000	0.572139	
mm_20232.1	chr2	125858906	125859106	-	1	NA	NA	NA	76	NM_009939	12848	Mm.3596	NM_009939	ENSMUSG00000027206	Cops2	AI315723|C85265|Csn2|Sgn2|TRIP-15|Trip15	COP9 signalosome subunit 2	protein-coding	0.060000	0.621891	
mm_11608.1	chr2	34406789	34406989	+	1	NA	NA	NA	38	NM_001290626	227743	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	0.120000	0.721393	
mm_10505.1	chr2	16355916	16356116	+	1	NA	NA	NA	-288	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.065000	0.641791	
mm_107509.1	chr12	40108271	40108471	+	1	NA	NA	NA	25857	NM_009132	20259	Mm.2416	NM_009132	ENSMUSG00000002565	Scin	AW545522|adseverin	scinderin	protein-coding	0.005000	0.447761	
mm_16954.1	chr2	17390779	17390979	-	1	NA	NA	NA	-172635	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	0.015000	0.398010	
mm_146785.1	chr18	20114535	20114735	-	1	NA	NA	NA	138	NM_001291804	13505	Mm.33740	NM_013504	ENSMUSG00000044322	Dsc1	1110020A10Rik|AI507491	desmocollin 1	protein-coding	0.005000	0.567164	
mm_3543.1	chr1	150403868	150404068	+	1	NA	NA	NA	-10913	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.015000	0.353234	
mm_125185.1	chr15	32251717	32251917	+	1	NA	NA	NA	7004	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding	0.000000	0.517413	
mm_15896.1	chr2	164948138	164948338	+	1	NA	NA	NA	19	NM_013599	17395	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.040000	0.597015	
mm_22464.1	chr3	3556398	3556598	+	1	NA	NA	NA	48468	NM_013920	30942	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.000000	0.373134	-33(TGATATTAAAGG,-,0.00)
mm_141074.1	chr17	25844358	25844558	-	1	NA	NA	NA	393	NM_145999	214952	Mm.40907	NM_145999	ENSMUSG00000025733	Rhot2	Arht2|Miro2	ras homolog family member T2	protein-coding	0.085000	0.696517	
mm_127296.1	chr15	100182194	100182394	+	1	NA	NA	NA	5742	NR_037311	100499528		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0.015000	0.487562	
mm_67717.1	chr7	90022970	90023170	-	1	NA	NA	NA	-6089	NR_110365	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	0.015000	0.597015	
mm_25675.1	chr3	122044349	122044549	+	1	NA	NA	NA	-11	NM_007378	11304	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0.050000	0.587065	
mm_161820.1	chr17	71183858	71184058	+	1	NA	NA	NA	-20	NM_022882	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.170000	0.796020	
mm_146588.1	chr18	9282660	9282860	-	1	NA	NA	NA	49	NM_153086	225152	Mm.119273	NM_153086	ENSMUSG00000036855	Gjd4	9430022F06Rik|Cx39	gap junction protein, delta 4	protein-coding	0.005000	0.472637	
mm_167458.1	chr8	123332762	123332962	+	1	NA	NA	NA	149	NM_172287	234857	Mm.150200	NM_172287	ENSMUSG00000010154	Spire2	BC026502|Spir-2|Spir2	spire homolog 2 (Drosophila)	protein-coding	0.145000	0.781095	
mm_69972.1	chr7	142376974	142377174	-	1	NA	NA	NA	-3328	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.010000	0.597015	
mm_95865.1	chr11	58009894	58010094	+	1	NA	NA	NA	930	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.140000	0.761194	
mm_156958.1	chrX	169989199	169989399	+	1	NA	NA	NA	-10382	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.045000	0.601990	
mm_166503.1	chr6	4747226	4747426	+	1	NA	NA	NA	20	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.090000	0.651741	8(CTCTATATAAGG,-,0.00)
mm_78762.1	chr9	43307475	43307675	+	1	NA	NA	NA	-3188	NM_023655	72169	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	0.005000	0.472637	
mm_51915.1	chr6	91233660	91233860	+	1	NA	NA	NA	20996	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.015000	0.636816	
mm_58049.1	chr6	136835311	136835511	-	1	NA	NA	NA	39	NM_001039558	654818	Mm.386899	NM_001039558	ENSMUSG00000043298	Smco3	C030030A07Rik	single-pass membrane protein with coiled-coil domains 3	protein-coding	0.015000	0.522388	
mm_64810.1	chr7	6708658	6708858	-	1	NA	NA	NA	1998	NR_023846	100169889	Mm.491213	NR_023846		Peg3os	Apeg3|Peg3as	Peg3 opposite strand	ncRNA	0.045000	0.447761	
mm_1622.1	chr1	74391779	74391979	+	1	NA	NA	NA	270	NM_153088	227292	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.130000	0.786070	
mm_61830.1	chr7	88278684	88278884	+	1	NA	NA	NA	699	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.010000	0.378109	
mm_122788.1	chr14	54416902	54417102	-	1	NA	NA	NA	677	NM_001253679	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.005000	0.522388	
mm_103791.1	chr11	82866044	82866244	-	1	NA	NA	NA	4600	NM_001164570	67338	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.025000	0.437811	
mm_15656.1	chr2	163204359	163204559	+	1	NA	NA	NA	-20995	NM_001098799	269389	Mm.207709	NM_001098799	ENSMUSG00000074607	Tox2	AI851523|AV026525|BI987407|Gcx1|RxHMG1	TOX high mobility group box family member 2	protein-coding	0.160000	0.726368	
mm_85982.1	chr9	112172382	112172582	-	1	NA	NA	NA	13467	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.010000	0.427861	
mm_70119.1	chr7	142969145	142969345	-	1	NA	NA	NA	19	NM_008554	17173	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	0.075000	0.661692	
mm_142627.1	chr17	47395605	47395805	-	1	NA	NA	NA	4901	NM_008189	14913	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	0.040000	0.616915	
mm_131190.1	chr16	7224230	7224430	+	1	NA	NA	NA	154495	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.035000	0.552239	
mm_44366.1	chr5	17808281	17808481	-	1	NA	NA	NA	27515	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.318408	72(CCTCATATAGCC,+,0.00)
mm_5716.1	chr1	44079646	44079846	-	1	NA	NA	NA	22642	NM_029368	75623	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0.010000	0.412935	
mm_130794.1	chr15	101690285	101690485	-	1	NA	NA	NA	3920	NM_008476	16687	Mm.302399	NM_008476	ENSMUSG00000058354	Krt6a	2310016L08Rik|Krt2-6a|Krt2-6c|MK6a|mK6[a]	keratin 6A	protein-coding	0.010000	0.557214	
mm_38184.1	chr4	135300145	135300345	-	1	NA	NA	NA	-27485	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.015000	0.532338	
mm_37235.1	chr4	118054645	118054845	-	1	NA	NA	NA	80201	NM_001285520	20441	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.015000	0.492537	-42(GCTTTTAGGCTG,+,0.00)
mm_120016.1	chr14	55745827	55746027	+	1	NA	NA	NA	234	NM_026403	67842	Mm.180338	NM_026403	ENSMUSG00000019297	Nop9	2610027L16Rik	NOP9 nucleolar protein	protein-coding	0.150000	0.731343	
mm_71422.1	chr8	46490882	46491082	+	1	NA	NA	NA	16	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.020000	0.577114	
mm_172633.1	chr8	20550211	20550411	+	1	NA	NA	NA	-64616	NM_001270553	100861668	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.085000	0.651741	
mm_122071.1	chr14	30595665	30595865	-	1	NA	NA	NA	14545	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.025000	0.577114	
mm_93201.1	chr10	94711045	94711245	-	1	NA	NA	NA	22355	NM_029852	77048	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	0.010000	0.447761	
mm_102441.1	chr11	59526772	59526972	-	1	NA	NA	NA	-15814	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.000000	0.522388	-89(CCCTTTTAATGA,-,0.00)
mm_38977.1	chr4	150909748	150909948	-	1	NA	NA	NA	73	NM_020569	57320	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.110000	0.721393	
mm_101321.1	chr11	22859571	22859771	-	1	NA	NA	NA	64	NM_016888	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.150000	0.771144	
mm_12251.1	chr2	68905202	68905402	+	1	NA	NA	NA	43861	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.010000	0.383085	
mm_140369.1	chr17	86963224	86963424	+	1	NA	NA	NA	213	NM_145491	104215	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.135000	0.791045	
mm_142728.1	chr17	48234660	48234860	-	1	NA	NA	NA	2021	NM_021406	58217	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	0.015000	0.462687	
mm_156136.1	chrX	127039883	127040083	+	1	NA	NA	NA	11	NM_001033241	211208	Mm.300684	NM_001033241	ENSMUSG00000062791	Gm382	-	predicted gene 382	protein-coding	0.000000	0.333333	
mm_91166.1	chr10	20689300	20689500	-	1	NA	NA	NA	35678	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.025000	0.432836	
mm_55445.1	chr6	67237794	67237994	-	1	NA	NA	NA	-29085	NM_001113564	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.025000	0.482587	
mm_43955.1	chr5	145231670	145231870	+	1	NA	NA	NA	11	NM_028298	72611	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	0.105000	0.696517	
mm_82131.1	chr9	123529651	123529851	+	1	NA	NA	NA	-131	NM_030692	83493	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.135000	0.741294	
mm_7962.1	chr1	133929983	133930183	-	1	NA	NA	NA	-8682	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.010000	0.457711	
mm_172108.1	chr6	3200753	3200953	+	1	NA	NA	NA	-87666	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.085000	0.597015	
mm_95900.1	chr11	58201422	58201622	+	1	NA	NA	NA	1966	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.020000	0.467662	
mm_158364.1	chrX	134808893	134809093	-	1	NA	NA	NA	228	NM_001166397	67416	Mm.285969	NM_026139	ENSMUSG00000033436	Armcx2	3230401N03Rik|AI043003|ALEX2	armadillo repeat containing, X-linked 2	protein-coding	0.045000	0.527363	16(CGCTATTAAAGC,-,0.00)
mm_129277.1	chr15	77153507	77153707	-	1	NA	NA	NA	205	NM_001110830	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.040000	0.517413	-73(ACGTTTAAAGGG,-,0.00)
mm_63672.1	chr7	130519563	130519763	+	1	NA	NA	NA	-83	NM_013799	11907	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0.105000	0.681592	
mm_150778.1	chr19	44294811	44295011	+	1	NA	NA	NA	1235	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.030000	0.547264	
mm_148141.1	chr18	77016487	77016687	-	1	NA	NA	NA	30709	NM_027721	71206	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	0.020000	0.537313	
mm_132124.1	chr16	31754470	31754670	+	1	NA	NA	NA	220	NM_001252436	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.020000	0.402985	
mm_9012.1	chr1	166047746	166047946	-	1	NA	NA	NA	-45212	NM_011137	18986	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0.040000	0.507463	
mm_96623.1	chr11	69134050	69134250	+	1	NA	NA	NA	7773	NM_011786	23801	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	0.025000	0.597015	
mm_57963.1	chr6	135254207	135254407	-	1	NA	NA	NA	29	NM_010352	14840	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	0.025000	0.601990	
mm_46677.1	chr5	109555442	109555642	-	1	NA	NA	NA	3451	NM_016715	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.065000	0.691542	
mm_16346.1	chr2	174346184	174346384	+	1	NA	NA	NA	16195	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.055000	0.592040	
mm_3319.1	chr1	137908831	137909031	+	1	NA	NA	NA	-57524	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.010000	0.363184	
mm_152766.1	chr19	20390903	20391103	-	1	NA	NA	NA	-332	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.005000	0.462687	
mm_65865.1	chr7	29481518	29481718	-	1	NA	NA	NA	23842	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.025000	0.537313	-81(GCCTATAGAGTG,+,0.00),33(GGTTCTTAAAGC,-,0.00),34(GTTCTTAAAGCC,+,0.00)
mm_132820.1	chr16	45224034	45224234	+	1	NA	NA	NA	-203	NM_001037719	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.015000	0.487562	
mm_137551.1	chr17	27561244	27561444	+	1	NA	NA	NA	4383	NM_001002895	106672	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251	expressed sequence AI413582	protein-coding	0.015000	0.582090	
mm_77297.1	chr8	116993399	116993599	-	1	NA	NA	NA	-50	NM_026572	68133	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	0.100000	0.681592	
mm_132098.1	chr16	31325185	31325385	+	1	NA	NA	NA	-10477	NM_001301354	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.040000	0.577114	
mm_67859.1	chr7	98993450	98993650	-	1	NA	NA	NA	147594	NM_178635	78610	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.010000	0.472637	
mm_43486.1	chr5	136919063	136919263	+	1	NA	NA	NA	17	NR_015555	66752	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	0.045000	0.572139	
mm_159729.1	chr5	44094598	44094798	-	1	NA	NA	NA	70	NM_001163581	19126	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.015000	0.497512	
mm_23351.1	chr3	55055127	55055327	+	1	NA	NA	NA	-15	NR_040593	70970	Mm.251485	NR_040593	ENSMUSG00000106589	4931419H13Rik	-	RIKEN cDNA 4931419H13 gene	ncRNA	0.120000	0.731343	
mm_104216.1	chr11	88344154	88344354	-	1	NA	NA	NA	-8519	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	0.005000	0.308458	4(TCCTTTAAAGAG,+,0.00),4(TCCTTTAAAGAG,-,0.00),44(CGCTTTTAAAGG,-,0.00),45(GCTTTTAAAGGA,+,0.00)
mm_111615.1	chr12	102403393	102403593	-	1	NA	NA	NA	36320	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.025000	0.517413	
mm_76158.1	chr8	82367508	82367708	-	1	NA	NA	NA	34978	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.000000	0.318408	
mm_78111.1	chr9	20642591	20642791	+	1	NA	NA	NA	115	NM_013911	30843	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding	0.040000	0.582090	
mm_25491.1	chr3	109340566	109340766	+	1	NA	NA	NA	-17	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.140000	0.810945	
mm_107254.1	chr12	28653801	28654001	+	1	NA	NA	NA	4299	NM_001286865	19819	Mm.10152	NM_011275	ENSMUSG00000020630	Rnaseh1	-	ribonuclease H1	protein-coding	0.005000	0.412935	
mm_131884.1	chr16	23224876	23225076	+	1	NA	NA	NA	236	NM_145933	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.060000	0.567164	
mm_139516.1	chr17	56584865	56585065	+	1	NA	NA	NA	-17	NM_001163300	224903	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	0.145000	0.691542	
mm_33080.1	chr4	123905040	123905240	+	1	NA	NA	NA	127	NM_019660	56309	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	0.135000	0.766169	
mm_5965.1	chr1	56978403	56978603	-	1	NA	NA	NA	7034	NR_024325	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0.055000	0.587065	
mm_134957.1	chr16	31311056	31311256	-	1	NA	NA	NA	3652	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.025000	0.547264	
mm_163230.1	chr11	103104721	103104921	+	1	NA	NA	NA	3133	NM_025988	67131	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	0.015000	0.582090	
mm_81432.1	chr9	109095161	109095361	+	1	NA	NA	NA	-175	NM_172775	235611	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.105000	0.701493	
mm_144276.1	chr18	11657437	11657637	+	1	NA	NA	NA	188	NM_001081223	225182	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8	protein-coding	0.095000	0.666667	
mm_135697.1	chr16	52451781	52451981	-	1	NA	NA	NA	1200	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.020000	0.437811	
mm_142227.1	chr17	37480660	37480860	-	1	NA	NA	NA	2769	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.000000	0.358209	
mm_156755.1	chrX	160434804	160435004	+	1	NA	NA	NA	44214	NM_001290445	237175	Mm.213016	NM_178712	ENSMUSG00000031298	Adgrg2	AW212196|B830041D06Rik|Gpr64|Me6	adhesion G protein-coupled receptor G2	protein-coding	0.010000	0.348259	
mm_114696.1	chr13	83503941	83504141	+	1	NA	NA	NA	7	NM_001347564	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.005000	0.432836	
mm_79429.1	chr9	55938181	55938381	+	1	NA	NA	NA	-166	NM_001081341	244891	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	0.065000	0.572139	
mm_14399.1	chr2	130040332	130040532	+	1	NA	NA	NA	-24024	NR_105757	102466628		NR_105757	ENSMUSG00000098347	Mir6339	Gm27848|mmu-mir-6339	microRNA 6339	ncRNA	0.015000	0.547264	-48(ACCTATATAGGC,+,0.00),-48(ACCTATATAGGC,-,0.00)
mm_38976.1	chr4	150909686	150909886	-	1	NA	NA	NA	135	NM_020569	57320	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.115000	0.751244	
mm_156298.1	chrX	136837537	136837737	+	1	NA	NA	NA	14891	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.378109	
mm_15263.1	chr2	155047513	155047713	+	1	NA	NA	NA	26884	NM_016661	269378	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	0.010000	0.502488	
mm_103114.1	chr11	69996773	69996973	-	1	NA	NA	NA	-68	NM_001291126	78246	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.095000	0.721393	
mm_92946.1	chr10	85102418	85102618	-	1	NA	NA	NA	-23	NM_010214	14202	Mm.46163	NM_010214	ENSMUSG00000050035	Fhl4	-	four and a half LIM domains 4	protein-coding	0.125000	0.731343	
mm_85553.1	chr9	106685779	106685979	-	1	NA	NA	NA	-63	NM_011573	21767	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.140000	0.751244	
mm_132013.1	chr16	25865719	25865919	+	1	NA	NA	NA	63903	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.000000	0.437811	
mm_41879.1	chr5	105198324	105198524	+	1	NA	NA	NA	41109	NM_001039646	626578	Mm.275893	NM_001039646	ENSMUSG00000105096	Gbp10	-	guanylate-binding protein 10	protein-coding	0.000000	0.522388	73(GTATATTTAAGG,-,0.00)
mm_102227.1	chr11	54910009	54910209	-	1	NA	NA	NA	7255	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.020000	0.601990	
mm_148568.1	chr19	4839346	4839546	+	1	NA	NA	NA	80	NM_207268	399599	Mm.444704	NM_207268	ENSMUSG00000067872	Ccdc87	4931419P11Rik	coiled-coil domain containing 87	protein-coding	0.065000	0.592040	
mm_108925.1	chr12	100898382	100898582	+	1	NA	NA	NA	1042	NM_001177674	238377	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.020000	0.547264	
mm_123643.1	chr14	68655613	68655813	-	1	NA	NA	NA	129	NM_010082	13522	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	0.010000	0.497512	-53(TCCCTTAAGAGG,-,0.00),-52(CCCTTAAGAGGA,+,0.00)
mm_130740.1	chr15	101255904	101256104	-	1	NA	NA	NA	-10842	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.005000	0.532338	
mm_163027.1	chr11	49846844	49847044	+	1	NA	NA	NA	193	NM_016961	26420	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0.145000	0.796020	
mm_8166.1	chr1	136960383	136960583	-	1	NA	NA	NA	-35	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	0.005000	0.417910	
mm_51017.1	chr6	65024869	65025069	+	1	NA	NA	NA	-17698	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.005000	0.492537	
mm_144626.1	chr18	32938806	32939006	+	1	NA	NA	NA	-135	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.065000	0.611940	
mm_66408.1	chr7	44479701	44479901	-	1	NA	NA	NA	-4716	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.517413	
mm_54275.1	chr6	29164581	29164781	-	1	NA	NA	NA	43	NM_133925	68272	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	0.085000	0.597015	
mm_75272.1	chr8	40862144	40862344	-	1	NA	NA	NA	-123	NM_007514	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.120000	0.711443	
mm_75016.1	chr8	29219534	29219734	-	1	NA	NA	NA	2	NM_001347499	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 netrin receptor D	protein-coding	0.135000	0.771144	
mm_88807.1	chr10	80755198	80755398	+	1	NA	NA	NA	92	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.120000	0.751244	
mm_40590.1	chr5	64230199	64230399	+	1	NA	NA	NA	-58	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.120000	0.771144	
mm_29274.1	chr3	107517912	107518112	-	1	NA	NA	NA	6	NM_001293689	229706	Mm.212867	NM_172271	ENSMUSG00000027894	Slc6a17	D130012J15Rik|Ntt4	solute carrier family 6 (neurotransmitter transporter), member 17	protein-coding	0.170000	0.756219	
mm_17850.1	chr2	34733003	34733203	-	1	NA	NA	NA	22129	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.015000	0.358209	
mm_78620.1	chr9	37555599	37555799	+	1	NA	NA	NA	-2954	NM_022029	64011	Mm.335065	NM_022029	ENSMUSG00000053310	Nrgn	0710001B06Rik|AI838505|NG|NG/RC3|Pss1|R75334|RC3	neurogranin	protein-coding	0.010000	0.487562	
mm_1750.1	chr1	75507076	75507276	+	1	NA	NA	NA	99	NM_010564	16322	Mm.1100	NM_010564	ENSMUSG00000032968	Inha	AW555078	inhibin alpha	protein-coding	0.020000	0.631841	
mm_111268.1	chr12	85280245	85280445	-	1	NA	NA	NA	90	NM_025421	66204	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	0.075000	0.616915	
mm_79297.1	chr9	51765211	51765411	+	1	NA	NA	NA	-41	NM_175535	244867	Mm.400352	NM_175535	ENSMUSG00000053199	Arhgap20	6530403F17Rik|A530023E23Rik|RARhoGAP|mKIAA1391	Rho GTPase activating protein 20	protein-coding	0.180000	0.815920	
mm_132826.1	chr16	45224852	45225052	+	1	NA	NA	NA	615	NM_177584	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.010000	0.432836	
mm_97293.1	chr11	76261359	76261559	+	1	NA	NA	NA	17723	NM_183263	67390	Mm.24886	NM_183263	ENSMUSG00000038046	Rnmtl1	4833420N02Rik|AI255153|HC90|Mrm3	RNA methyltransferase like 1	protein-coding	0.025000	0.562189	
mm_14749.1	chr2	144556167	144556367	+	1	NA	NA	NA	38	NM_001252545	27054	Mm.248492	NM_019787	ENSMUSG00000027429	Sec23b	-	SEC23 homolog B, COPII coat complex component	protein-coding	0.085000	0.626866	
mm_165755.1	chr3	112202771	112202971	+	1	NA	NA	NA	320968	NR_045362	625585	Mm.389497	NR_045362	ENSMUSG00000104543	Gm6602	-	predicted gene 6602	ncRNA	0.000000	0.393035	
mm_156942.1	chrX	169936653	169936853	+	1	NA	NA	NA	42164	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.373134	
mm_65510.1	chr7	25754587	25754787	-	1	NA	NA	NA	14	NM_178089	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.085000	0.726368	
mm_44186.1	chr5	151400145	151400345	+	1	NA	NA	NA	-6259	NR_131166	100042166	Mm.443286	NR_131166	ENSMUSG00000097321	Gm3704	-	predicted gene 3704	ncRNA	0.015000	0.522388	
mm_18140.1	chr2	45043521	45043721	-	1	NA	NA	NA	-20444	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.005000	0.338308	
mm_13781.1	chr2	118779640	118779840	+	1	NA	NA	NA	21	NM_170593	214240	Mm.221499	NM_170593	ENSMUSG00000040035	Disp2	AI840597|B230210L08Rik|DispB|mKIAA1742	dispatched RND tramsporter family member 2	protein-coding	0.080000	0.656716	
mm_31149.1	chr4	43394856	43395056	+	1	NA	NA	NA	-11546	NM_199057	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.030000	0.532338	
mm_68396.1	chr7	109545190	109545390	-	1	NA	NA	NA	25158	NR_028079	100302499	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	0.010000	0.507463	
mm_119750.1	chr14	54153119	54153319	+	1	NA	NA	NA	100710	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.437811	
mm_164327.1	chr16	7039307	7039507	+	1	NA	NA	NA	-30428	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.005000	0.542289	
mm_151336.1	chr19	55894854	55895054	+	1	NA	NA	NA	-367	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.000000	0.303483	-33(CTCTTTTAAAGT,-,0.00),-32(TCTTTTAAAGTT,+,0.00)
mm_32619.1	chr4	114406131	114406331	+	1	NA	NA	NA	-493	NM_001085549	666048	Mm.331779	NM_001085549	ENSMUSG00000070867	Trabd2b	Gm12824|Hkat|OTTMUSG00000008561	TraB domain containing 2B	protein-coding	0.145000	0.855721	
mm_171601.1	chr4	147806960	147807160	-	1	NA	NA	NA	2728	NM_001127189	100041677	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157|OTTMUSG00000010679	zinc finger protein 984	protein-coding	0.000000	0.393035	
mm_15108.1	chr2	153601063	153601263	+	1	NA	NA	NA	31618	NM_001195390	99311	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	0.030000	0.577114	
mm_124156.1	chr14	93256814	93257014	-	1	NA	NA	NA	631974	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.005000	0.308458	
mm_168055.1	chrY	90812631	90812831	-	1	NA	NA	NA	26675	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.000000	0.467662	
mm_171306.1	chr3	94054786	94054986	-	1	NA	NA	NA	-1	NM_001163730	668359	Mm.80593	NM_001163730	ENSMUSG00000094328	Gm9125	EG668359	predicted gene 9125	protein-coding	0.010000	0.467662	-35(GCCTATATAAGC,-,0.00)
mm_14062.1	chr2	122640779	122640979	+	1	NA	NA	NA	76	NR_030547	387165		NR_030547	ENSMUSG00000076309	Mir147	Mirn147|mmu-mir-147	microRNA 147	ncRNA	0.005000	0.383085	
mm_60264.1	chr7	43824438	43824638	+	1	NA	NA	NA	-6	NM_001164697	19144	Mm.3944	NM_011177	ENSMUSG00000050063	Klk6	AI849898|BSP|Bssp|Klk29|MSP|Prss18|Prss9|neurosin	kallikrein related-peptidase 6	protein-coding	0.015000	0.562189	
mm_13476.1	chr2	105691492	105691692	+	1	NA	NA	NA	9129	NM_001310145	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.035000	0.497512	
mm_19001.1	chr2	76870399	76870599	-	1	NA	NA	NA	112048	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.030000	0.492537	
mm_148707.1	chr19	5801840	5802040	+	1	NA	NA	NA	732	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.402985	
mm_84792.1	chr9	77046164	77046364	-	1	NA	NA	NA	-483	NM_012033	26944	Mm.23199	NM_012033	ENSMUSG00000032357	Tinag	AI452335|TIN-ag	tubulointerstitial nephritis antigen	protein-coding	0.000000	0.472637	
mm_70606.1	chr8	13404809	13405009	+	1	NA	NA	NA	-172	NM_011881	24013	Mm.257501	NM_011881	ENSMUSG00000031450	Grk1	Gprk1|Rhok|Rk	G protein-coupled receptor kinase 1	protein-coding	0.005000	0.552239	
mm_80919.1	chr9	100899024	100899224	+	1	NA	NA	NA	135760	NM_001311149	66904	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0.005000	0.348259	
mm_23142.1	chr3	38885797	38885997	+	1	NA	NA	NA	-1043	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.130000	0.726368	
mm_107056.1	chr12	16653636	16653836	+	1	NA	NA	NA	266	NM_008747	18217	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT2R|NTRL	neurotensin receptor 2	protein-coding	0.090000	0.656716	
mm_152366.1	chr19	10101639	10101839	-	1	NA	NA	NA	-236	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	0.055000	0.686567	
mm_115819.1	chr13	19927818	19928018	-	1	NA	NA	NA	-103661	NM_181754	353346	Mm.239268	NM_181754	ENSMUSG00000053101	Gpr141	PGR13	G protein-coupled receptor 141	protein-coding	0.010000	0.442786	
mm_24548.1	chr3	93397839	93398039	+	1	NA	NA	NA	4240	NM_009100	20129	Mm.1417	NM_009100	ENSMUSG00000041984	Rptn	-	repetin	protein-coding	0.000000	0.437811	
mm_128607.1	chr15	58389172	58389372	-	1	NA	NA	NA	2	NM_027211	69787	Mm.237985	NM_027211		Anxa13	1810034H17Rik|AV055219	annexin A13	protein-coding	0.015000	0.427861	
mm_39704.1	chr5	27261997	27262197	+	1	NA	NA	NA	162	NM_001136060	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.030000	0.537313	22(GCATTTAAAGAG,+,0.00)
mm_171061.1	chr3	108840425	108840625	-	1	NA	NA	NA	-23	NM_011504	20912	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.115000	0.711443	
mm_139680.1	chr17	57415005	57415205	+	1	NA	NA	NA	56419	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.412935	75(GCTTAAAAAACC,+,0.00)
mm_72034.1	chr8	70776704	70776904	+	1	NA	NA	NA	-58	NR_029440	72093	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	0.125000	0.731343	
mm_151220.1	chr19	53677271	53677471	+	1	NA	NA	NA	65	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.110000	0.706468	
mm_70761.1	chr8	21565271	21565471	+	1	NA	NA	NA	-15	NM_001270613	100862126	Mm.459166	NM_001270613	ENSMUSG00000094662	Defa36	Gm21498	defensin, alpha, 36	protein-coding	0.000000	0.512438	-34(CCCTATAAATGC,+,0.00),-34(CCCTATAAATGC,-,0.00)
mm_164503.1	chr16	92621187	92621387	+	1	NA	NA	NA	76042	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.010000	0.547264	
mm_114245.1	chr13	56627849	56628049	+	1	NA	NA	NA	18346	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.045000	0.597015	
mm_126036.1	chr15	76899834	76900034	+	1	NA	NA	NA	-7	NM_025536	66398	Mm.291716	NM_025536	ENSMUSG00000055041	Commd5	2310065H03Rik|AI854466|D15Ertd81e|Hcarg	COMM domain containing 5	protein-coding	0.075000	0.611940	
mm_120586.1	chr14	69807707	69807907	+	1	NA	NA	NA	-2262	NM_153514	246710	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0.010000	0.527363	
mm_120017.1	chr14	55757743	55757943	+	1	NA	NA	NA	581	NM_009894	12684	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	0.020000	0.537313	-2(CCTTATCTAGCA,+,0.00)
mm_43354.1	chr5	135187160	135187360	+	1	NA	NA	NA	-63	NM_011714	22385	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.090000	0.651741	
mm_87492.1	chr10	51495299	51495499	+	1	NA	NA	NA	4501	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.010000	0.368159	
mm_153452.1	chr19	41031951	41032151	-	1	NA	NA	NA	2776	NM_009345	21673	Mm.25620	NM_009345	ENSMUSG00000025014	Dntt	Tdt	deoxynucleotidyltransferase, terminal	protein-coding	0.025000	0.542289	
mm_129211.1	chr15	76522231	76522431	-	1	NA	NA	NA	-202	NM_130893	170729	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.110000	0.746269	
mm_170661.1	chr2	113728832	113729032	+	1	NA	NA	NA	-20382	NR_040614	75166	Mm.410811	NR_040614	ENSMUSG00000084798	4930533B01Rik	-	RIKEN cDNA 4930533B01 gene	ncRNA	0.025000	0.512438	
mm_51283.1	chr6	72277298	72277498	+	1	NA	NA	NA	-27212	NM_001282071	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.005000	0.532338	
mm_171488.1	chr4	146101558	146101758	+	1	NA	NA	NA	4346	NM_001037926	626316	Mm.270762	NM_001037926	ENSMUSG00000066009	Zfp987	Gm13051|OTTMUSG00000010104|OTTMUSG00000010173	zinc finger protein 987	protein-coding	0.010000	0.512438	
mm_147678.1	chr18	60660054	60660254	-	1	NA	NA	NA	-3256	NR_045401	328963	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.010000	0.572139	
mm_67645.1	chr7	84605653	84605853	-	1	NA	NA	NA	189	NM_010176	14085	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	-	fumarylacetoacetate hydrolase	protein-coding	0.055000	0.601990	
mm_17372.1	chr2	26916428	26916628	-	1	NA	NA	NA	2	NR_073420	20930	Mm.347512	NM_013677	ENSMUSG00000015790	Surf1	0610010F23Rik|Surf-1	surfeit gene 1	protein-coding	0.055000	0.611940	
mm_117349.1	chr13	69738840	69739040	-	1	NA	NA	NA	957	NM_001145162	76980	Mm.23960	NM_001145162	ENSMUSG00000052981	Ube2ql1	3110006E14Rik	ubiquitin-conjugating enzyme E2Q family-like 1	protein-coding	0.145000	0.771144	
mm_42536.1	chr5	115907443	115907643	+	1	NA	NA	NA	61887	NM_007708	12704	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0.055000	0.671642	
mm_17960.1	chr2	37422827	37423027	-	1	NA	NA	NA	-24	NM_001290642	319817	Mm.288785	NM_001100591	ENSMUSG00000075376	Rc3h2	2900024N03Rik|9430019J22Rik|D930043C02Rik|Mnab|Rnf164	ring finger and CCCH-type zinc finger domains 2	protein-coding	0.110000	0.721393	
mm_138514.1	chr17	35237668	35237868	+	1	NA	NA	NA	1172	NM_023179	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.040000	0.572139	
mm_106720.1	chr12	3856303	3856503	+	1	NA	NA	NA	5841	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.015000	0.621891	
mm_154872.1	chrX	20682048	20682248	+	1	NA	NA	NA	-5806	NM_001310456	18555	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	0.015000	0.522388	
mm_22360.1	chr2	181039076	181039276	-	1	NA	NA	NA	1	NM_015730	11438	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	0.160000	0.766169	
mm_63801.1	chr7	132933490	132933690	+	1	NA	NA	NA	-16032	NM_207302	360216	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0.005000	0.417910	
mm_23188.1	chr3	40950548	40950748	+	1	NA	NA	NA	17	NM_001040399	214048	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0.115000	0.691542	
mm_112323.1	chr12	115312552	115312752	-	1	NA	NA	NA	383142	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.005000	0.457711	-10(CACCCTAAAAAC,-,0.00)
mm_145788.1	chr18	65172051	65172251	+	1	NA	NA	NA	-76710	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.005000	0.323383	
mm_85475.1	chr9	105827960	105828160	-	1	NA	NA	NA	25	NM_001102607	245026	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0.045000	0.666667	
mm_111011.1	chr12	78980616	78980816	-	1	NA	NA	NA	2762	NM_001170401	268567	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.015000	0.537313	
mm_59903.1	chr7	30321664	30321864	+	1	NA	NA	NA	611	NM_001033140	68332	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	0.030000	0.557214	
mm_81400.1	chr9	109017285	109017485	+	1	NA	NA	NA	-21182	NM_025858	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.035000	0.562189	
mm_108188.1	chr12	76573010	76573210	+	1	NA	NA	NA	-25185	NR_046044	100504549	Mm.440349	NR_046044		AI463170	-	expressed sequence AI463170	ncRNA	0.015000	0.547264	
mm_101669.1	chr11	37104252	37104452	-	1	NA	NA	NA	-160111	NM_011856	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.000000	0.353234	
mm_20381.1	chr2	128802578	128802778	-	1	NA	NA	NA	-15625	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.005000	0.477612	
mm_34564.1	chr4	149854473	149854673	+	1	NA	NA	NA	-80306	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.060000	0.522388	
mm_74402.1	chr8	3279514	3279714	-	1	NA	NA	NA	3	NM_010568	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.080000	0.696517	
mm_17749.1	chr2	32716564	32716764	-	1	NA	NA	NA	-3692	NR_039536	100628606		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0.030000	0.552239	
mm_65548.1	chr7	27131145	27131345	-	1	NA	NA	NA	11290	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.075000	0.592040	
mm_153734.1	chr19	44410383	44410583	-	1	NA	NA	NA	-2774	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.055000	0.562189	
mm_45186.1	chr5	52034122	52034322	-	1	NA	NA	NA	101795	NR_105845	102466648		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0.005000	0.462687	
mm_85465.1	chr9	105495382	105495582	-	1	NA	NA	NA	-349	NM_001253836	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.080000	0.636816	
mm_149831.1	chr19	24556232	24556432	+	1	NA	NA	NA	-505	NM_008846	18719	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	0.085000	0.686567	
mm_168703.1	chr11	98027776	98027976	+	1	NA	NA	NA	952	NM_009078	19921	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0.025000	0.497512	
mm_17305.1	chr2	26352136	26352336	-	1	NA	NA	NA	-126	NM_001139504	52838	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	0.050000	0.452736	
mm_122656.1	chr14	51911406	51911606	-	1	NA	NA	NA	1982	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.025000	0.562189	
mm_140913.1	chr17	24168734	24168934	-	1	NA	NA	NA	561	NR_037854	100039636	Mm.30155	NR_037854		Atp6v0c-ps2	Atp6l-ps2|Gm15487	ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2	pseudo	0.065000	0.676617	88(GCTTTTATGGCG,+,0.00)
mm_156532.1	chrX	151047110	151047310	+	1	NA	NA	NA	40	NM_008001	14163	Mm.8142	NM_008001	ENSMUSG00000025265	Fgd1	ZFYVE3	FYVE, RhoGEF and PH domain containing 1	protein-coding	0.085000	0.696517	
mm_108996.1	chr12	102949369	102949569	+	1	NA	NA	NA	610	NM_001081017	217843	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	0.065000	0.587065	
mm_67472.1	chr7	80495193	80495393	-	1	NA	NA	NA	39705	NM_007550	12144	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ helicase-like	protein-coding	0.025000	0.492537	
mm_20832.1	chr2	147085374	147085574	-	1	NA	NA	NA	-129	NM_023504	228731	Mm.315498	NM_023504	ENSMUSG00000054160	Nkx2-4	1700001P03Rik|Nkx-2.4|tinman	NK2 homeobox 4	protein-coding	0.150000	0.711443	
mm_66555.1	chr7	45234199	45234399	-	1	NA	NA	NA	4540	NM_007645	12493	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0.055000	0.686567	
mm_42844.1	chr5	122158203	122158403	+	1	NA	NA	NA	24	NM_013636	19047	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	0.135000	0.751244	
mm_110615.1	chr12	56613210	56613410	-	1	NA	NA	NA	-26	NM_008701	18094	Mm.129420	NM_008701	ENSMUSG00000058669	Nkx2-9	Nkx-2.9|Nkx2-8|Nkx2.9|tinman	NK2 homeobox 9	protein-coding	0.070000	0.656716	
mm_21249.1	chr2	156179878	156180078	-	1	NA	NA	NA	260	NM_001291114	170791	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.125000	0.671642	
mm_123557.1	chr14	66847525	66847725	-	1	NA	NA	NA	20975	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.020000	0.477612	
mm_39967.1	chr5	32150007	32150207	+	1	NA	NA	NA	13635	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.000000	0.557214	
mm_77632.1	chr8	124080723	124080923	-	1	NA	NA	NA	57350	NM_001029876	382038	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	0.020000	0.562189	
mm_56915.1	chr6	119359402	119359602	-	1	NA	NA	NA	-28736	NM_172492	211187	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	0.010000	0.432836	
mm_133889.1	chr16	97356666	97356866	+	1	NA	NA	NA	38	NM_019517	56175	Mm.97885	NM_019517	ENSMUSG00000040605	Bace2	1110059C24Rik|AEPLC|AI850424|ALP56|ARP1|ASP1|ASP21|BAE2|CDA13|CEAP1|DRAP	beta-site APP-cleaving enzyme 2	protein-coding	0.105000	0.706468	
mm_170984.1	chr2	73214235	73214435	-	1	NA	NA	NA	112	NM_030091	67059	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	0.135000	0.736318	
mm_136779.1	chr17	10324519	10324719	+	1	NA	NA	NA	17	NR_045461	76634	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.025000	0.447761	70(GCATTTAAAGCC,+,0.00)
mm_133310.1	chr16	77625385	77625585	+	1	NA	NA	NA	-20788	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0.015000	0.298507	
mm_154683.1	chrX	7922148	7922348	+	1	NA	NA	NA	2426	NM_013892	30052	Mm.4881	NM_013892	ENSMUSG00000039278	Pcsk1n	AI848336|KEP|PEN|PEN19|PEN20|Pan3|SAAS|SAASCT|bLEN|lLEN|proSAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding	0.125000	0.741294	
mm_77578.1	chr8	123518720	123518920	-	1	NA	NA	NA	-15	NM_018855	104346	Mm.117265	NM_018855	ENSMUSG00000040220	Gas8	Gas11	growth arrest specific 8	protein-coding	0.070000	0.631841	
mm_2647.1	chr1	125444468	125444668	+	1	NA	NA	NA	-8841	NM_001205386	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.000000	0.437811	
mm_147634.1	chr18	59774401	59774601	-	1	NA	NA	NA	194871	NR_105773	102465182		NR_105773	ENSMUSG00000098287	Mir6355	Gm27473|mmu-mir-6355	microRNA 6355	ncRNA	0.015000	0.417910	-24(CCCTATTAAAAA,-,0.00)
mm_18735.1	chr2	72995656	72995856	-	1	NA	NA	NA	-15310	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.005000	0.547264	
mm_168953.1	chr12	78350775	78350975	+	1	NA	NA	NA	124220	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.015000	0.417910	
mm_61998.1	chr7	91162439	91162639	+	1	NA	NA	NA	71753	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.368159	
mm_73096.1	chr8	94564609	94564809	+	1	NA	NA	NA	31681	NM_153507	234577	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0.000000	0.562189	
mm_144034.1	chr17	90088200	90088400	-	1	NA	NA	NA	68	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.015000	0.462687	
mm_13940.1	chr2	121171077	121171277	+	1	NA	NA	NA	9	NM_001290824	51885	Mm.383499	NM_153387	ENSMUSG00000027263	Tubgcp4	4932441P04Rik|76p|D2Ertd435e|GCP-4	tubulin, gamma complex associated protein 4	protein-coding	0.130000	0.726368	
mm_57809.1	chr6	129451724	129451924	-	1	NA	NA	NA	176	NM_175526	243653	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	0.020000	0.552239	
mm_121306.1	chr14	105897829	105898029	+	1	NA	NA	NA	-1110	NM_011897	24064	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty homolog 2 (Drosophila)	protein-coding	0.050000	0.616915	
mm_51460.1	chr6	82070583	82070783	+	1	NA	NA	NA	29055	NM_145570	232146	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	0.015000	0.557214	
mm_88898.1	chr10	81151367	81151567	+	1	NA	NA	NA	15196	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.030000	0.611940	
mm_153986.1	chr19	47919149	47919349	-	1	NA	NA	NA	50	NM_001001738	414801	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER|mKIAA1754	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	0.080000	0.606965	-84(GTTCTTATAAGG,-,0.00),-82(TCTTATAAGGAG,+,0.00)
mm_97160.1	chr11	75468100	75468300	+	1	NA	NA	NA	150	NM_027249	380712	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	0.050000	0.626866	
mm_172899.1	chr9	57334007	57334207	+	1	NA	NA	NA	-56963	NR_040729	73772	Mm.444684	NR_040729		4930430J02Rik	-	RIKEN cDNA 4930430J02 gene	ncRNA	0.060000	0.537313	
mm_84133.1	chr9	59036275	59036475	-	1	NA	NA	NA	66	NM_008684	18007	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0.115000	0.751244	
mm_19788.1	chr2	107059552	107059752	-	1	NA	NA	NA	-1	NM_008045	14308	Mm.249525	NM_008045	ENSMUSG00000027120	Fshb	FSH|FSH-B|FSH-beta|Fshbeta	follicle stimulating hormone beta	protein-coding	0.000000	0.427861	-32(TTGTATAAAAGA,-,0.00)
mm_110448.1	chr12	51609630	51609830	-	1	NA	NA	NA	16389	NM_001198835	12810	Mm.21325	NM_007728	ENSMUSG00000020953	Coch	AW122937|Coch-5B2|D12H14S564E	cochlin	protein-coding	0.000000	0.407960	63(CCCTTTTAAAGT,-,0.00),64(CCTTTTAAAGTT,+,0.00),80(TGCTTTAAAAAA,-,0.00)
mm_157059.1	chrX	8132387	8132587	-	1	NA	NA	NA	371	NM_001290783	73447	Mm.284162	NM_026137	ENSMUSG00000031166	Wdr13	1700060B08Rik|5730411P10Rik|DXHXS7467e|W51679|mMg21	WD repeat domain 13	protein-coding	0.045000	0.587065	
mm_99511.1	chr11	103102921	103103121	+	1	NA	NA	NA	1333	NM_025988	67131	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	0.030000	0.522388	-33(GGGTATAAAAGA,-,0.00)
mm_84248.1	chr9	62377264	62377464	-	1	NA	NA	NA	36021	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.025000	0.562189	-76(GGCCCTTAAAGC,-,0.00),-75(GCCCTTAAAGCC,+,0.00),-74(CCCTTAAAGCCC,+,0.00)
mm_41608.1	chr5	96406838	96407038	+	1	NA	NA	NA	32983	NM_175473	231470	Mm.291120	NM_175473	ENSMUSG00000034687	Fras1	E130113P14Rik|bl|mKIAA1500	Fraser extracellular matrix complex subunit 1	protein-coding	0.000000	0.393035	
mm_51675.1	chr6	86438323	86438523	+	1	NA	NA	NA	25	NM_146170	232196	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	0.085000	0.567164	
mm_10302.1	chr2	10802974	10803174	+	1	NA	NA	NA	285470	NR_035417	100316668		NR_035417	ENSMUSG00000080657	Mir669i	Mirn669i|mir-669i|mmu-mir-669i	microRNA 669i	ncRNA	0.005000	0.283582	
mm_108872.1	chr12	99644960	99645160	+	1	NA	NA	NA	-17086	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.060000	0.592040	
mm_133821.1	chr16	95769122	95769322	+	1	NA	NA	NA	66815	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.010000	0.537313	
mm_154569.1	chrX	6577219	6577419	+	1	NA	NA	NA	33	NM_001313765	208431	Mm.23208	NM_001040459	ENSMUSG00000068270	Shroom4	D430043L16Rik|Gm724|Shrm4	shroom family member 4	protein-coding	0.015000	0.522388	15(CCCTTAAAACGG,+,0.00)
mm_66721.1	chr7	46100649	46100849	-	1	NA	NA	NA	15	NM_001204411	16514	Mm.333863	NM_010602	ENSMUSG00000096146	Kcnj11	Kir6.2|mBIR	potassium inwardly rectifying channel, subfamily J, member 11	protein-coding	0.090000	0.741294	
mm_137630.1	chr17	28328692	28328892	+	1	NA	NA	NA	321	NM_011287	19896	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.125000	0.706468	
mm_46142.1	chr5	93165260	93165460	-	1	NA	NA	NA	41135	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.035000	0.527363	
mm_140011.1	chr17	73162987	73163187	+	1	NA	NA	NA	55102	NM_001177967	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.020000	0.537313	
mm_92697.1	chr10	80678018	80678218	-	1	NA	NA	NA	-1825	NM_021462	17347	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.010000	0.537313	
mm_22345.1	chr2	180893303	180893503	-	1	NA	NA	NA	-637	NR_029538	723951		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA	0.145000	0.751244	
mm_51334.1	chr6	72385130	72385330	+	1	NA	NA	NA	-4762	NM_001080742	53620	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0.010000	0.502488	
mm_111463.1	chr12	98528605	98528805	-	1	NA	NA	NA	4861	NR_136759	105245437	Mm.446375	NR_136759		Gm40893	-	predicted gene, 40893	ncRNA	0.020000	0.547264	
mm_106659.1	chr11	121229159	121229359	-	1	NA	NA	NA	50	NM_144832	217370	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	0.070000	0.592040	
mm_156657.1	chrX	157711084	157711284	+	1	NA	NA	NA	12211	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.000000	0.368159	
mm_90566.1	chr10	128231330	128231530	+	1	NA	NA	NA	-633	NM_001164080	21853	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0.010000	0.442786	
mm_132757.1	chr16	44394688	44394888	+	1	NA	NA	NA	-11	NM_001033247	212517	Mm.327888	NM_001033247	ENSMUSG00000071550	Cfap44	6330444M21Rik|D16Ertd642e|Gm1750|Wdr52	cilia and flagella associated protein 44	protein-coding	0.050000	0.597015	
mm_76155.1	chr8	82356923	82357123	-	1	NA	NA	NA	45563	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.005000	0.393035	
mm_53104.1	chr6	125067854	125068054	+	1	NA	NA	NA	34	NM_001163269	381810	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0.025000	0.616915	
mm_111336.1	chr12	86883820	86884020	-	1	NA	NA	NA	894	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.080000	0.691542	
mm_19967.1	chr2	117996203	117996403	-	1	NA	NA	NA	114899	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA	0.005000	0.417910	-45(TCCTCTTAAAGG,-,0.00),-44(CCTCTTAAAGGG,+,0.00)
mm_29453.1	chr3	113195076	113195276	-	1	NA	NA	NA	-38449	NM_001190403	545562	Mm.462977	NM_001190403		Amy2b	Amy-X|Amy2-2|OTTMUSG00000022462|mAmy2-1	amylase 2b	protein-coding	0.015000	0.452736	
mm_77093.1	chr8	110805735	110805935	-	1	NA	NA	NA	89	NM_029646	76527	Mm.77697	NM_029646	ENSMUSG00000031750	Il34	2010004A03Rik|AI593503	interleukin 34	protein-coding	0.040000	0.582090	
mm_25621.1	chr3	118562075	118562275	+	1	NA	NA	NA	-3	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.045000	0.656716	
mm_19187.1	chr2	84414081	84414281	-	1	NA	NA	NA	11085	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.005000	0.398010	
mm_125571.1	chr15	59315061	59315261	+	1	NA	NA	NA	69	NM_009270	20775	Mm.296169	NM_009270	ENSMUSG00000022351	Sqle	AI323792	squalene epoxidase	protein-coding	0.120000	0.686567	
mm_30534.1	chr4	3574793	3574993	+	1	NA	NA	NA	14	NM_054089	116940	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	0.115000	0.676617	
mm_161935.1	chr18	89769159	89769359	-	1	NA	NA	NA	-123	NM_001039173	623279	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0.125000	0.716418	
mm_100616.1	chr11	121549751	121549951	+	1	NA	NA	NA	-30509	NM_178763	319530	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.035000	0.477612	
mm_65439.1	chr7	25388878	25389078	-	1	NA	NA	NA	1134	NM_001039507	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.015000	0.547264	
mm_11044.1	chr2	27121083	27121283	+	1	NA	NA	NA	21294	NM_175427	109349	Mm.314080	NM_175427	ENSMUSG00000009216	Fam163b	C630035N08Rik	family with sequence similarity 163, member B	protein-coding	0.035000	0.462687	
mm_120364.1	chr14	64440637	64440837	+	1	NA	NA	NA	289	NM_001253715	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.095000	0.646766	
mm_139689.1	chr17	57421572	57421772	+	1	NA	NA	NA	62986	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.502488	
mm_66114.1	chr7	31042040	31042240	-	1	NA	NA	NA	191	NM_008761	18301	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	0.060000	0.631841	
mm_105021.1	chr11	100441722	100441922	-	1	NA	NA	NA	-102	NM_025727	66720	Mm.34168	NM_025727	ENSMUSG00000001558	Klhl10	4921517C11Rik	kelch-like 10	protein-coding	0.005000	0.542289	
mm_117879.1	chr13	98984465	98984665	-	1	NA	NA	NA	0	NM_027064	69382	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0.005000	0.447761	
mm_78897.1	chr9	44639053	44639253	+	1	NA	NA	NA	-34080	NM_001277851	58866	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0.000000	0.358209	
mm_171022.1	chr2	84086816	84087016	-	1	NA	NA	NA	-145690	NM_027964	71861	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.060000	0.636816	
mm_157210.1	chrX	12761975	12762175	-	1	NA	NA	NA	-102	NM_001048208	26896	Mm.17616	NM_012005	ENSMUSG00000064127	Med14	9930001L01Rik|AU041628|Crsp2|ENSMUSG00000073278|Gm641|ORF1|Trap170	mediator complex subunit 14	protein-coding	0.095000	0.691542	
mm_5723.1	chr1	44102323	44102523	-	1	NA	NA	NA	-35	NM_029368	75623	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0.150000	0.696517	
mm_124862.1	chr15	10177136	10177336	+	1	NA	NA	NA	-2	NM_011169	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.025000	0.502488	-99(GTCCTTTAAGGG,-,0.00),-97(CCTTTAAGGGTC,+,0.00)
mm_21851.1	chr2	165875722	165875922	-	1	NA	NA	NA	2615	NM_001291158	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.015000	0.532338	
mm_154187.1	chr19	58807431	58807631	-	1	NA	NA	NA	-13117	NM_026208	67507	Mm.27027	NM_026208	ENSMUSG00000026931	1700019N19Rik	-	RIKEN cDNA 1700019N19 gene	protein-coding	0.005000	0.348259	
mm_77051.1	chr8	109577126	109577326	-	1	NA	NA	NA	1946	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.050000	0.562189	
mm_10377.1	chr2	11777826	11778026	+	1	NA	NA	NA	173	NM_177268	320816	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0.055000	0.676617	
mm_89040.1	chr10	82833860	82834060	+	1	NA	NA	NA	9	NM_001042523	50493	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	0.020000	0.522388	
mm_33451.1	chr4	130680763	130680963	+	1	NA	NA	NA	17504	NM_001159605	80912	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0.005000	0.457711	
mm_139515.1	chr17	56584854	56585054	+	1	NA	NA	NA	-28	NM_001163300	224903	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	0.150000	0.711443	
mm_58924.1	chr7	17971901	17972101	+	1	NA	NA	NA	-166	NM_023289	66996	Mm.36666	NM_023289	ENSMUSG00000030368	Ceacam11	1600015D01Rik	carcinoembryonic antigen-related cell adhesion molecule 11	protein-coding	0.010000	0.407960	-63(GTCCATATAAGG,-,0.00),-61(CCATATAAGGCC,+,0.00),-53(GGCCATATAAGG,-,0.00),-51(CCATATAAGGGC,+,0.00)
mm_15677.1	chr2	163547058	163547258	+	1	NA	NA	NA	3	NM_008261	15378	Mm.202383	NM_008261	ENSMUSG00000017950	Hnf4a	HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14	hepatic nuclear factor 4, alpha	protein-coding	0.020000	0.656716	
mm_160392.1	chr8	58911527	58911727	-	1	NA	NA	NA	0	NM_175032	270049	Mm.236368	NM_175032	ENSMUSG00000096914	Galntl6	1700021K10Rik|4930431L04Rik|A830023L05	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6	protein-coding	0.020000	0.452736	
mm_131892.1	chr16	23228192	23228392	+	1	NA	NA	NA	2271	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.010000	0.437811	
mm_64117.1	chr7	141079651	141079851	+	1	NA	NA	NA	-18	NM_019762	56460	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0.045000	0.686567	
mm_21755.1	chr2	164839602	164839802	-	1	NA	NA	NA	5929	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.025000	0.597015	
mm_88425.1	chr10	77225847	77226047	+	1	NA	NA	NA	33276	NR_026944	100169878	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	ENSMUSG00000078444	predicted gene 10941	ncRNA	0.020000	0.482587	
mm_16940.1	chr2	14823817	14824017	-	1	NA	NA	NA	-175	NM_001252533	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.020000	0.447761	39(GGCTTTTAAAGC,-,0.00),40(GCTTTTAAAGCT,+,0.00)
mm_2705.1	chr1	127985661	127985861	+	1	NA	NA	NA	116710	NM_027678	226409	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0.005000	0.422886	
mm_106371.1	chr11	118399755	118399955	-	1	NA	NA	NA	2076	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.000000	0.532338	
mm_59286.1	chr7	24918739	24918939	+	1	NA	NA	NA	14493	NM_001130152	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.005000	0.567164	
mm_123117.1	chr14	56085116	56085316	-	1	NA	NA	NA	-19	NM_008572	17231	Mm.41979	NM_008572	ENSMUSG00000022157	Mcpt8	BB139338|MMCP-8	mast cell protease 8	protein-coding	0.005000	0.502488	
mm_98252.1	chr11	88357074	88357274	+	1	NA	NA	NA	4401	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	0.005000	0.562189	
mm_8529.1	chr1	154884425	154884625	-	1	NA	NA	NA	-158605	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.035000	0.562189	
mm_33419.1	chr4	129984755	129984955	+	1	NA	NA	NA	-15	NM_001290714	230775	Mm.262241	NM_173071	ENSMUSG00000028782	Adgrb2	Bai2	adhesion G protein-coupled receptor B2	protein-coding	0.200000	0.855721	
mm_155423.1	chrX	73491952	73492152	+	1	NA	NA	NA	8451	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.035000	0.522388	
mm_106825.1	chr12	7988574	7988774	+	1	NA	NA	NA	10997	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.000000	0.502488	
mm_90352.1	chr10	127165158	127165358	+	1	NA	NA	NA	102	NM_001244617	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.120000	0.721393	
mm_53776.1	chr6	146219712	146219912	+	1	NA	NA	NA	282411	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.025000	0.482587	
mm_119634.1	chr14	51884827	51885027	+	1	NA	NA	NA	85	NM_001029990	52535	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding	0.055000	0.562189	
mm_26180.1	chr3	138313186	138313386	+	1	NA	NA	NA	0	NM_026945	69117	Mm.46265	NM_026945	ENSMUSG00000053054	Adh6a	1810009C16Rik|Adh5a	alcohol dehydrogenase 6A (class V)	protein-coding	0.010000	0.427861	-62(TACTTTTAATGG,-,0.00),-60(CTTTTAATGGCT,+,0.00),-34(CCCTATAAATAC,-,0.00)
mm_12621.1	chr2	74697645	74697845	+	1	NA	NA	NA	-18	NM_013555	15438	Mm.26544	NM_013555	ENSMUSG00000043342	Hoxd9	Hox-4.4|Hox-5.2	homeobox D9	protein-coding	0.075000	0.681592	
mm_154789.1	chrX	13071544	13071744	+	1	NA	NA	NA	146	NM_009481	22284	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	0.100000	0.601990	
mm_15837.1	chr2	164698432	164698632	+	1	NA	NA	NA	31	NM_030058	78239	Mm.160060	NM_030058	ENSMUSG00000017310	Spint4	9230105I15Rik	serine protease inhibitor, Kunitz type 4	protein-coding	0.015000	0.542289	
mm_68599.1	chr7	116237523	116237723	-	1	NA	NA	NA	153	NM_001305186	233765	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.125000	0.721393	
mm_146675.1	chr18	12819621	12819821	-	1	NA	NA	NA	186	NR_045524	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.045000	0.532338	
mm_98804.1	chr11	97044426	97044626	+	1	NA	NA	NA	2940	NM_026154	107732	Mm.208946	NM_026154	ENSMUSG00000001445	Mrpl10	0610040E02Rik|C78440|MRP-L8|Rpml8	mitochondrial ribosomal protein L10	protein-coding	0.035000	0.582090	
mm_88964.1	chr10	81394817	81395017	+	1	NA	NA	NA	1853	NM_001099917	72273	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.015000	0.527363	
mm_131712.1	chr16	21204651	21204851	+	1	NA	NA	NA	-44	NM_010143	13845	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	0.095000	0.711443	
mm_29881.1	chr3	131111841	131112041	-	1	NA	NA	NA	-850	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.060000	0.507463	
mm_11457.1	chr2	32182936	32183136	+	1	NA	NA	NA	31888	NM_001159634	227723	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0.000000	0.512438	
mm_70380.1	chr8	10183224	10183424	+	1	NA	NA	NA	29413	NM_001319151	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.005000	0.383085	
mm_52850.1	chr6	121847871	121848071	+	1	NA	NA	NA	9430	NM_008645	17836	Mm.1311	NM_008645	ENSMUSG00000059908	Mug1	-	murinoglobulin 1	protein-coding	0.000000	0.472637	
mm_99016.1	chr11	98891092	98891292	+	1	NA	NA	NA	-16697	NM_001025779	23834	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0.010000	0.467662	
mm_12209.1	chr2	67173771	67173971	+	1	NA	NA	NA	37	NM_001033477	383709	Mm.244520	NM_001033477		Gm1322	-	predicted gene 1322	protein-coding	0.010000	0.427861	
mm_164599.1	chr17	28864647	28864847	+	1	NA	NA	NA	6336	NM_001034885	433091	Mm.328925	NM_001034885	ENSMUSG00000043286	Pnpla1	-	patatin-like phospholipase domain containing 1	protein-coding	0.020000	0.527363	
mm_90480.1	chr10	127893876	127894076	+	1	NA	NA	NA	-4559	NM_027301	70061	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	0.005000	0.552239	
mm_101246.1	chr11	20741501	20741701	-	1	NA	NA	NA	-45	NM_181411	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.095000	0.716418	
mm_56902.1	chr6	119196433	119196633	-	1	NA	NA	NA	-124	NM_001255999	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.010000	0.517413	
mm_69431.1	chr7	132813624	132813824	-	1	NA	NA	NA	-528	NM_212473	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.140000	0.681592	
mm_48679.1	chr5	146221306	146221506	-	1	NA	NA	NA	51	NM_028774	74132	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	0.120000	0.666667	
mm_9651.1	chr1	177642796	177642996	-	1	NA	NA	NA	47	NR_037994	75589	Mm.86666	NR_037994	ENSMUSG00000101746	2310043L19Rik	-	RIKEN cDNA 2310043L19 gene	ncRNA	0.005000	0.557214	
mm_47410.1	chr5	123134072	123134272	-	1	NA	NA	NA	-1543	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.005000	0.457711	
mm_14242.1	chr2	127838725	127838925	+	1	NA	NA	NA	-6966	NM_009772	12235	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	0.020000	0.542289	
mm_152541.1	chr19	11334287	11334487	-	1	NA	NA	NA	308	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.010000	0.477612	
mm_96872.1	chr11	70213834	70214034	+	1	NA	NA	NA	24	NM_153081	216867	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0.095000	0.676617	
mm_66060.1	chr7	30744108	30744308	-	1	NA	NA	NA	-527	NM_001290631	14447	Mm.436562	NM_008085	ENSMUSG00000061099	Gapdhs	Gapd-s|Gapds	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein-coding	0.015000	0.537313	
mm_129627.1	chr15	80219213	80219413	-	1	NA	NA	NA	-14767	NM_178719	239555	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.045000	0.587065	
mm_22195.1	chr2	173276886	173277086	-	1	NA	NA	NA	-453	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.035000	0.522388	
mm_47874.1	chr5	134688460	134688660	-	1	NA	NA	NA	30	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.150000	0.796020	
mm_141443.1	chr17	29842220	29842420	-	1	NA	NA	NA	45562	NM_001081160	74762	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0.090000	0.706468	
mm_24122.1	chr3	88200175	88200375	+	1	NA	NA	NA	-14896	NR_037276	100526540		NR_037276	ENSMUSG00000092988	Mir3093	mir-3093|mmu-mir-3093	microRNA 3093	ncRNA	0.035000	0.552239	
mm_41964.1	chr5	106977558	106977758	+	1	NA	NA	NA	13097	NM_001271566	12545	Mm.20842	NM_009863	ENSMUSG00000029283	Cdc7	AI597260|Cdc7l1|muCdc7	cell division cycle 7 (S. cerevisiae)	protein-coding	0.010000	0.253731	
mm_94645.1	chr11	16915987	16916187	+	1	NA	NA	NA	35195	NR_110421	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.010000	0.412935	
mm_171761.1	chr5	105239472	105239672	-	1	NA	NA	NA	-39	NM_001039646	626578	Mm.275893	NM_001039646	ENSMUSG00000105096	Gbp10	-	guanylate-binding protein 10	protein-coding	0.000000	0.497512	
mm_41172.1	chr5	88002441	88002641	+	1	NA	NA	NA	16	NM_011422	20599	Mm.261199	NM_011422	ENSMUSG00000029280	Smr3a	AA589601|MSG1|MSG3|Smr1|Smr3	submaxillary gland androgen regulated protein 3A	protein-coding	0.010000	0.417910	
mm_56974.1	chr6	120257370	120257570	-	1	NA	NA	NA	37089	NM_198884	330406	Mm.321840	NM_198884	ENSMUSG00000041372	B4galnt3	AB114826|B4GalNAcT3|C330047A21	beta-1,4-N-acetyl-galactosaminyl transferase 3	protein-coding	0.005000	0.472637	
mm_37932.1	chr4	132921045	132921245	-	1	NA	NA	NA	1406	NM_145553	230789	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0.025000	0.422886	-7(TTTTTTAAAGGA,+,0.00)
mm_13373.1	chr2	103606320	103606520	+	1	NA	NA	NA	40110	NM_178890	99382	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.005000	0.472637	
mm_72377.1	chr8	81342610	81342810	+	1	NA	NA	NA	148	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.065000	0.611940	-33(CGCTATAAATAG,-,0.00)
mm_142706.1	chr17	47878881	47879081	-	1	NA	NA	NA	-44290	NM_001109973	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.065000	0.641791	
mm_119029.1	chr14	30025570	30025770	+	1	NA	NA	NA	3037	NM_175343	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.005000	0.452736	
mm_128616.1	chr15	58929739	58929939	-	1	NA	NA	NA	3891	NM_175151	69694	Mm.383230	NM_175151	ENSMUSG00000050891	Tatdn1	2310079P03Rik|CDA11	TatD DNase domain containing 1	protein-coding	0.010000	0.407960	
mm_170143.1	chr17	42007382	42007582	-	1	NA	NA	NA	-308465	NM_028474	627626	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	0.055000	0.621891	
mm_76989.1	chr8	107056602	107056802	-	1	NA	NA	NA	35	NM_139229	97484	Mm.288641	NM_139229	ENSMUSG00000031916	Cog8	BB235941|C87832	component of oligomeric golgi complex 8	protein-coding	0.105000	0.616915	
mm_11434.1	chr2	31974374	31974574	+	1	NA	NA	NA	24	NM_172268	227720	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	0.110000	0.656716	
mm_129935.1	chr15	84855038	84855238	-	1	NA	NA	NA	991	NM_001081166	271305	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.110000	0.616915	
mm_73416.1	chr8	106058764	106058964	+	1	NA	NA	NA	-739	NM_010901	18021	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.030000	0.522388	
mm_6902.1	chr1	84811556	84811756	-	1	NA	NA	NA	27648	NM_133975	14897	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.000000	0.402985	
mm_142146.1	chr17	36006322	36006522	-	1	NA	NA	NA	11918	NR_015618	77810	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0.020000	0.537313	
mm_63577.1	chr7	128117813	128118013	+	1	NA	NA	NA	-11655	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.015000	0.363184	
mm_74270.1	chr8	125012838	125013038	+	1	NA	NA	NA	-59	NM_016909	53424	Mm.5248	NM_016909	ENSMUSG00000056820	Tsnax	R74833|Trax	translin-associated factor X	protein-coding	0.135000	0.746269	
mm_94684.1	chr11	19582731	19582931	+	1	NA	NA	NA	-341611	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.030000	0.482587	
mm_164566.1	chr17	17882864	17883064	+	1	NA	NA	NA	975	NM_013521	14293	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0.005000	0.363184	-21(CCATTTATAGAG,+,0.00)
mm_139935.1	chr17	71090271	71090471	+	1	NA	NA	NA	70814	NM_001083934	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.020000	0.542289	-31(GCTTATAAGCAG,+,0.00),69(GCCTTTAAAGAC,+,0.00),69(GCCTTTAAAGAC,-,0.00),70(CCTTTAAAGACC,+,0.00),71(CTTTAAAGACCC,+,0.00)
mm_132131.1	chr16	31865386	31865586	+	1	NA	NA	NA	-13324	NM_013900	30060	Mm.30988	NM_013900	ENSMUSG00000022780	Mfi2	CD228|MTf|Meltf	antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5	protein-coding	0.005000	0.407960	-75(TGGTTTAAAAGG,-,0.00)
mm_74792.1	chr8	22396140	22396340	-	1	NA	NA	NA	2381	NM_181325	18408	Mm.200907	NM_181325	ENSMUSG00000031482	Slc25a15	D630044L02Rik|Ornt1	solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15	protein-coding	0.005000	0.497512	-80(GCATTTATGGCC,+,0.00)
mm_16148.1	chr2	172288029	172288229	+	1	NA	NA	NA	39637	NM_008561	17201	Mm.57183	NM_008561	ENSMUSG00000038537	Mc3r	MC3-R	melanocortin 3 receptor	protein-coding	0.005000	0.512438	
mm_111752.1	chr12	103951162	103951362	-	1	NA	NA	NA	5635	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	0.005000	0.537313	
mm_155915.1	chrX	102017335	102017535	+	1	NA	NA	NA	53872	NM_001278534	331474	Mm.23297	NM_183318	ENSMUSG00000049191	Rgag4	6430402L03Rik|Mar5|Mart5|mKIAA2001	retrotransposon gag domain containing 4	protein-coding	0.020000	0.567164	
mm_80452.1	chr9	77981415	77981615	+	1	NA	NA	NA	64150	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.020000	0.527363	
mm_36083.1	chr4	58206544	58206744	-	1	NA	NA	NA	-48	NM_022814	64817	Mm.261024	NM_022814	ENSMUSG00000028369	Svep1	1110021D17Rik|4833413O10Rik|AA387071|D430029O09Rik|Polydom	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	protein-coding	0.025000	0.542289	3(CATTTTATAGGC,+,0.00)
mm_29173.1	chr3	106516009	106516209	-	1	NA	NA	NA	30069	NM_028110	72121	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.010000	0.482587	
mm_172821.1	chr9	14845662	14845862	-	1	NA	NA	NA	-14448	NM_001310734	14608	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0.055000	0.547264	-29(GCCTTTTAAAAA,-,0.00),-28(CCTTTTAAAAAT,+,0.00)
mm_65340.1	chr7	24980505	24980705	-	1	NA	NA	NA	7062	NR_106014	102465634		NR_106014	ENSMUSG00000099258	Mir7047	Gm27270|mmu-mir-7047	microRNA 7047	ncRNA	0.020000	0.547264	
mm_75722.1	chr8	69077358	69077558	-	1	NA	NA	NA	-11278	NM_007509	11966	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0.005000	0.427861	
mm_168437.1	chr1	136364798	136364998	+	1	NA	NA	NA	-18794	NM_001347110	67886	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	0.025000	0.527363	
mm_68917.1	chr7	126461571	126461771	-	1	NA	NA	NA	1402	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.020000	0.562189	
mm_43018.1	chr5	123907441	123907641	+	1	NA	NA	NA	266	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.050000	0.671642	
mm_84883.1	chr9	79758270	79758470	-	1	NA	NA	NA	1483	NM_009945	12866	Mm.152627	NM_009945	ENSMUSG00000032330	Cox7a2	COX7AL|Cox7a3|CoxVIIa-L	cytochrome c oxidase subunit VIIa 2	protein-coding	0.010000	0.378109	-49(CTTCTTAGAGGC,+,0.00),21(GTGTCTAAGAGG,-,0.00)
mm_115825.1	chr13	20976181	20976381	-	1	NA	NA	NA	97018	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.000000	0.343284	-39(ATCTTTTAAAAG,-,0.00)
mm_26483.1	chr3	144697257	144697457	+	1	NA	NA	NA	22978	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.025000	0.417910	
mm_165379.1	chr2	128429463	128429663	+	1	NA	NA	NA	-212	NR_028590	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.020000	0.507463	
mm_153524.1	chr19	41774089	41774289	-	1	NA	NA	NA	27228	NR_040320	100502871	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	0.005000	0.412935	
mm_8999.1	chr1	165769144	165769344	-	1	NA	NA	NA	5464	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.010000	0.497512	
mm_160330.1	chr8	8660705	8660905	-	1	NA	NA	NA	-32	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.180000	0.820896	
mm_13172.1	chr2	92914998	92915198	+	1	NA	NA	NA	-3	NM_030725	80976	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	0.100000	0.716418	
mm_97568.1	chr11	78937730	78937930	+	1	NA	NA	NA	12539	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.577114	
mm_23066.1	chr3	36065955	36066155	+	1	NA	NA	NA	55	NM_172678	229211	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	0.095000	0.656716	
mm_97275.1	chr11	75999865	76000065	+	1	NA	NA	NA	53	NM_198637	74230	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding	0.095000	0.641791	
mm_8791.1	chr1	161775098	161775298	-	1	NA	NA	NA	13297	NM_001205243	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.000000	0.417910	-42(GGCTTTTAATGG,-,0.00),-40(CTTTTAATGGCA,+,0.00)
mm_74026.1	chr8	121730280	121730480	+	1	NA	NA	NA	-179	NM_020605	57340	Mm.306870	NM_020605	ENSMUSG00000025318	Jph3	JP-3|Jp3	junctophilin 3	protein-coding	0.160000	0.771144	
mm_39618.1	chr5	24394309	24394509	+	1	NA	NA	NA	253	NM_029020	74610	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding	0.035000	0.502488	
mm_136424.1	chr16	94222891	94223091	-	1	NA	NA	NA	64865	NM_139145	110948	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.015000	0.527363	
mm_74973.1	chr8	27128551	27128751	-	1	NA	NA	NA	-19	NM_025686	66653	Mm.334467	NM_025686	ENSMUSG00000031487	Brf2	2700059M06Rik|5730512K07Rik|AU018504|AU022602|BRFU|TFIIIB50	BRF2, RNA polymerase III transcription initiation factor 50kDa subunit	protein-coding	0.090000	0.636816	
mm_22852.1	chr3	28263305	28263505	+	1	NA	NA	NA	191	NM_001163009	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.115000	0.661692	-60(CCATTTAAATAC,+,0.00)
mm_151951.1	chr19	5801157	5801357	-	1	NA	NA	NA	1415	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.025000	0.557214	
mm_143624.1	chr17	78870384	78870584	-	1	NA	NA	NA	12088	NM_011163	19106	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	0.010000	0.422886	
mm_112700.1	chr13	17711063	17711263	+	1	NA	NA	NA	15750	NM_025479	66308	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	0.000000	0.263682	
mm_156291.1	chrX	136837396	136837596	+	1	NA	NA	NA	14750	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.348259	
mm_45631.1	chr5	76330994	76331194	-	1	NA	NA	NA	62	NM_001310637	79455	Mm.143764	NM_023508	ENSMUSG00000029235	Pdcl2	1700010B22Rik|1700016K07Rik|Mgcphlp|Tphlp	phosducin-like 2	protein-coding	0.025000	0.587065	
mm_115700.1	chr13	14317902	14318102	-	1	NA	NA	NA	205224	NM_001081348	94253	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.005000	0.363184	
mm_80862.1	chr9	98490454	98490654	+	1	NA	NA	NA	17	NM_009034	19660	Mm.12825	NM_009034	ENSMUSG00000032454	Rbp2	Crbp-2|CrbpII|Rbp-2	retinol binding protein 2, cellular	protein-coding	0.015000	0.457711	-56(CTTTATATACCT,+,0.00),-35(AGCTATAAAAGC,-,0.00)
mm_89925.1	chr10	111229353	111229553	+	1	NA	NA	NA	64651	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.000000	0.328358	
mm_144255.1	chr18	10921856	10922056	+	1	NA	NA	NA	-130554	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.010000	0.412935	
mm_532.1	chr1	37890431	37890631	+	1	NA	NA	NA	-22	NM_027098	107734	Mm.26614	NM_027098	ENSMUSG00000026087	Mrpl30	2310001L22Rik|MRP-L28|Rpml28	mitochondrial ribosomal protein L30	protein-coding	0.085000	0.567164	
mm_117094.1	chr13	59822523	59822723	-	1	NA	NA	NA	524	NM_153538	214290	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.065000	0.587065	85(GGGTTGAAAAGC,-,0.00)
mm_166439.1	chr5	137210755	137210955	-	1	NA	NA	NA	-77399	NM_009599	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.025000	0.597015	
mm_156110.1	chrX	114474329	114474529	+	1	NA	NA	NA	96	NM_001290477	237010	Mm.132583	NM_172781	ENSMUSG00000025597	Klhl4	B130014A11|C130018J01Rik	kelch-like 4	protein-coding	0.020000	0.457711	
mm_2709.1	chr1	128103236	128103436	+	1	NA	NA	NA	30	NM_181750	226412	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	0.100000	0.651741	
mm_141920.1	chr17	35000689	35000889	-	1	NA	NA	NA	-43	NM_033075	110956	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0.075000	0.606965	
mm_81374.1	chr9	108854596	108854796	+	1	NA	NA	NA	653	NM_134420	171429	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.045000	0.621891	-11(CCCTTTAAGAAG,-,0.00)
mm_2610.1	chr1	120340560	120340760	+	1	NA	NA	NA	78	NM_207233	226359	Mm.337409	NM_207233	ENSMUSG00000036907	C1ql2	BC040774|CTRP10	complement component 1, q subcomponent-like 2	protein-coding	0.090000	0.671642	
mm_95410.1	chr11	49983011	49983211	+	1	NA	NA	NA	-42220	NM_021540	59044	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.015000	0.492537	
mm_88211.1	chr10	70204549	70204749	+	1	NA	NA	NA	-15	NM_001304739	69563	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Mln	myoregulin	protein-coding	0.020000	0.492537	
mm_137974.1	chr17	33558755	33558955	+	1	NA	NA	NA	3148	NM_053214	17916	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0.000000	0.487562	
mm_107926.1	chr12	71111308	71111508	+	1	NA	NA	NA	-20	NM_029227	75266	Mm.402075	NM_029227	ENSMUSG00000021078	Tomm20l	4930553D19Rik	translocase of outer mitochondrial membrane 20 homolog (yeast)-like	protein-coding	0.085000	0.666667	
mm_35961.1	chr4	53142647	53142847	-	1	NA	NA	NA	17148	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.010000	0.388060	
mm_14133.1	chr2	126035578	126035778	+	1	NA	NA	NA	1020	NM_008008	14178	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0.035000	0.457711	
mm_172428.1	chr7	28350628	28350828	+	1	NA	NA	NA	39	NM_013647	20055	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	0.115000	0.636816	
mm_55935.1	chr6	84588873	84589073	-	1	NA	NA	NA	4837	NM_175475	232174	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.065000	0.567164	-35(CTCTATATAAAC,-,0.00)
mm_20205.1	chr2	125301630	125301830	-	1	NA	NA	NA	54215	NM_023595	110074	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0.010000	0.422886	34(CTTTATAAAAAG,-,0.00)
mm_10548.1	chr2	16657318	16657518	+	1	NA	NA	NA	301114	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.000000	0.353234	12(CTCTATATAGCC,+,0.00)
mm_103405.1	chr11	75439477	75439677	-	1	NA	NA	NA	-76	NM_008878	18816	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	0.025000	0.567164	
mm_156511.1	chrX	150550847	150551047	+	1	NA	NA	NA	-3502	NR_106147	102465782		NR_106147	ENSMUSG00000099172	Mir3620	Gm27984|mmu-mir-3620	microRNA 3620	ncRNA	0.000000	0.442786	-56(TTTTAAAAAGCC,+,0.00)
mm_126075.1	chr15	77728994	77729194	+	1	NA	NA	NA	22	NM_173743	71898	Mm.422856	NM_173743	ENSMUSG00000068246	Apol9b	2310016F22Rik	apolipoprotein L 9b	protein-coding	0.015000	0.547264	
mm_131073.1	chr16	4701089	4701289	+	1	NA	NA	NA	17119	NM_001135112	83945	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	0.030000	0.497512	
mm_125849.1	chr15	74959044	74959244	+	1	NA	NA	NA	4038	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.005000	0.547264	
mm_46300.1	chr5	100499917	100500117	-	1	NA	NA	NA	622	NM_172714	231506	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0.055000	0.587065	
mm_45341.1	chr5	65764278	65764478	-	1	NA	NA	NA	857	NM_001024917	333789	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.155000	0.805970	
mm_111522.1	chr12	100180865	100181065	-	1	NA	NA	NA	-7003	NR_045282	100038378	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	ENSMUSG00000072884	predicted gene 10433	ncRNA	0.050000	0.557214	
mm_69403.1	chr7	132317109	132317309	-	1	NA	NA	NA	-54	NM_029935	77590	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.080000	0.631841	
mm_167409.1	chr8	105664205	105664405	+	1	NA	NA	NA	-26601	NM_001033320	234695	Mm.471640	NM_001033320	ENSMUSG00000050357	Carmil2	CG1399-PB|D130029J02Rik|Gm585|Rltpr	capping protein regulator and myosin 1 linker 2	protein-coding	0.015000	0.472637	
mm_125923.1	chr15	76199485	76199685	+	1	NA	NA	NA	-179	NM_201392	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.045000	0.641791	
mm_134676.1	chr16	22406058	22406258	-	1	NA	NA	NA	33412	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.020000	0.492537	
mm_44289.1	chr5	8368075	8368275	-	1	NA	NA	NA	-15	NM_001310439	11496	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.105000	0.741294	
mm_43301.1	chr5	134611930	134612130	+	1	NA	NA	NA	2995	NM_022964	56743	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0.015000	0.547264	
mm_53155.1	chr6	125266173	125266373	+	1	NA	NA	NA	748	NR_015527	73870	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.040000	0.592040	
mm_57886.1	chr6	131353484	131353684	-	1	NA	NA	NA	34866	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.020000	0.587065	
mm_162748.1	chr10	58371421	58371621	+	1	NA	NA	NA	67	NM_201242	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.025000	0.522388	
mm_68417.1	chr7	109703469	109703669	-	1	NA	NA	NA	-168	NM_020616	57373	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	0.105000	0.631841	
mm_84899.1	chr9	79830908	79831108	-	1	NA	NA	NA	37367	NR_040734	74633	Mm.262175	NR_040734	ENSMUSG00000086918	4930429F24Rik	-	RIKEN cDNA 4930429F24 gene	ncRNA	0.010000	0.517413	
mm_103081.1	chr11	69900836	69901036	-	1	NA	NA	NA	50	NM_001316696	70419	Mm.272859	NM_027419	ENSMUSG00000018570	2810408A11Rik	1700019L01Rik|4930470J18Rik	RIKEN cDNA 2810408A11 gene	protein-coding	0.055000	0.597015	
mm_160062.1	chr7	4970884	4971084	-	1	NA	NA	NA	-23	NM_001200041	381835	Mm.297828	NM_001200041	ENSMUSG00000085272	Sbk3	Gm1078|Sgk110	SH3 domain binding kinase family, member 3	protein-coding	0.000000	0.552239	
mm_25509.1	chr3	109598444	109598644	+	1	NA	NA	NA	24537	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.015000	0.412935	
mm_138433.1	chr17	35108170	35108370	+	1	NA	NA	NA	-30	NM_148947	114652	Mm.222643	NM_148947	ENSMUSG00000034482	Ly6g5c	G5c|NG33	lymphocyte antigen 6 complex, locus G5C	protein-coding	0.015000	0.621891	31(TGCTTTTTATGG,-,0.00),33(CTTTTTATGGCA,+,0.00)
mm_16526.1	chr2	181525686	181525886	+	1	NA	NA	NA	5301	NM_001271584	13002	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0.010000	0.457711	
mm_9095.1	chr1	169046794	169046994	-	1	NA	NA	NA	484570	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0.015000	0.492537	
mm_117433.1	chr13	74591280	74591480	-	1	NA	NA	NA	-48492	NM_030711	80898	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0.020000	0.497512	
mm_48305.1	chr5	138365509	138365709	-	1	NA	NA	NA	-75867	NM_028130	72154	Mm.20263	NM_028130	ENSMUSG00000036898	Zfp157	2610020C11Rik|A630094N24Rik|AI327407|mszf12|mszf23-1	zinc finger protein 157	protein-coding	0.030000	0.507463	
mm_114606.1	chr13	75794444	75794644	+	1	NA	NA	NA	-45342	NM_053108	93692	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.005000	0.437811	
mm_155678.1	chrX	91632115	91632315	+	1	NA	NA	NA	21	NM_001205268	629542	Mm.490235	NM_001205268	ENSMUSG00000064129	Gm14781	OTTMUSG00000017976|OTTMUSG000000179761	predicted gene 14781	protein-coding	0.005000	0.383085	
mm_51821.1	chr6	89096059	89096259	+	1	NA	NA	NA	49	NR_134977	232217	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	0.035000	0.552239	
mm_133647.1	chr16	91793785	91793985	+	1	NA	NA	NA	64514	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.040000	0.462687	
mm_48269.1	chr5	137962836	137963036	-	1	NA	NA	NA	23	NM_080450	118446	Mm.332771	NM_080450	ENSMUSG00000056966	Gjc3	Cx29|Gje1	gap junction protein, gamma 3	protein-coding	0.015000	0.542289	
mm_27111.1	chr3	30793472	30793672	-	1	NA	NA	NA	696	NM_027016	69276	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	0.175000	0.791045	
mm_136255.1	chr16	90971957	90972157	-	1	NA	NA	NA	-37208	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.000000	0.353234	
mm_37848.1	chr4	132192180	132192380	-	1	NA	NA	NA	19976	NM_145393	213541	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0.010000	0.343284	
mm_13431.1	chr2	104886231	104886431	+	1	NA	NA	NA	7	NM_177600	211936	Mm.416538	NM_177600	ENSMUSG00000045106	Ccdc73	2210415I11Rik|4931417A20|AV080665|BC095976	coiled-coil domain containing 73	protein-coding	0.065000	0.522388	
mm_36629.1	chr4	91376396	91376596	-	1	NA	NA	NA	0	NM_001177883	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding	0.080000	0.597015	
mm_39644.1	chr5	24645355	24645555	+	1	NA	NA	NA	2	NR_003953	72252	Mm.87446	NR_003953	ENSMUSG00000038165	1700022A21Rik	-	glycerol-3-phosphate dehydrogenase 1-like pseudogene	pseudo	0.005000	0.462687	-78(CCTTATCAGGGG,+,0.00),15(GACTTTAAAGGG,-,0.00)
mm_152128.1	chr19	7014082	7014282	-	1	NA	NA	NA	5287	NM_153795	108101	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.030000	0.636816	
mm_138723.1	chr17	36898020	36898220	+	1	NA	NA	NA	-10	NM_146077	224762	Mm.213417	NM_146077	ENSMUSG00000058063	Trim31	BC026666|HCG1|HCGI|RNF	tripartite motif-containing 31	protein-coding	0.010000	0.402985	-34(TACTTTATAGGC,-,0.00)
mm_114935.1	chr13	95960563	95960763	+	1	NA	NA	NA	-68741	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.010000	0.417910	
mm_150539.1	chr19	39309556	39309756	+	1	NA	NA	NA	22571	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.000000	0.283582	
mm_102917.1	chr11	69591988	69592188	-	1	NA	NA	NA	11729	NM_001127233	22059	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.005000	0.572139	
mm_140287.1	chr17	85393717	85393917	+	1	NA	NA	NA	224579	NR_038084	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.020000	0.368159	
mm_86956.1	chr10	24927501	24927701	+	1	NA	NA	NA	-131	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.015000	0.452736	
mm_151570.1	chr19	60766326	60766526	+	1	NA	NA	NA	7959	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.015000	0.512438	
mm_85774.1	chr9	109052362	109052562	-	1	NA	NA	NA	-2404	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.005000	0.432836	
mm_78754.1	chr9	42571514	42571714	+	1	NA	NA	NA	-99388	NM_173038	272589	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0.040000	0.646766	
mm_63399.1	chr7	127296279	127296479	+	1	NA	NA	NA	119	NM_001253874	16408	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.030000	0.597015	
mm_33500.1	chr4	130825930	130826130	+	1	NA	NA	NA	33493	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.005000	0.547264	
mm_13348.1	chr2	102968612	102968812	+	1	NA	NA	NA	-67047	NM_001039150	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.010000	0.442786	
mm_128851.1	chr15	71954258	71954458	-	1	NA	NA	NA	79869	NM_027174	69700	Mm.322500	NM_027174	ENSMUSG00000079022	Col22a1	2310067L16Rik|C80743	collagen, type XXII, alpha 1	protein-coding	0.015000	0.527363	
mm_45687.1	chr5	77355738	77355938	-	1	NA	NA	NA	45354	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.015000	0.432836	
mm_16261.1	chr2	173406962	173407162	+	1	NA	NA	NA	-115530	NM_028158	72221	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0.000000	0.487562	
mm_70118.1	chr7	142968669	142968869	-	1	NA	NA	NA	495	NM_008554	17173	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	0.080000	0.587065	
mm_52937.1	chr6	122933932	122934132	+	1	NA	NA	NA	12184	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.005000	0.462687	
mm_50174.1	chr6	41558457	41558657	+	1	NA	NA	NA	36781	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.472637	
mm_44099.1	chr5	149289195	149289395	+	1	NA	NA	NA	24291	NM_009663	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.000000	0.432836	
mm_46992.1	chr5	115334132	115334332	-	1	NA	NA	NA	6929	NM_029645	384281	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	0.005000	0.442786	-83(GCCCCTAAAAAA,-,0.00)
mm_34769.1	chr4	153806201	153806401	+	1	NA	NA	NA	144175	NR_040670	407793	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0.005000	0.577114	
mm_7414.1	chr1	119470951	119471151	-	1	NA	NA	NA	33731	NM_022327	64143	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0.010000	0.328358	
mm_135416.1	chr16	45158418	45158618	-	1	NA	NA	NA	155	NM_028756	74102	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	0.035000	0.447761	
mm_31050.1	chr4	41135980	41136180	+	1	NA	NA	NA	59	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.105000	0.726368	
mm_64284.1	chr7	141844666	141844866	+	1	NA	NA	NA	5694	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.025000	0.577114	
mm_119977.1	chr14	55560952	55561152	+	1	NA	NA	NA	129	NM_001199009	28199	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.025000	0.477612	
mm_14531.1	chr2	132781342	132781542	+	1	NA	NA	NA	164	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.065000	0.631841	
mm_79245.1	chr9	50554806	50555006	+	1	NA	NA	NA	232	NM_133217	170752	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	0.020000	0.537313	
mm_5587.1	chr1	39552272	39552472	-	1	NA	NA	NA	-3532	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.005000	0.373134	
mm_110256.1	chr12	31634535	31634735	-	1	NA	NA	NA	23	NM_001164090	12033	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	0.195000	0.810945	
mm_33441.1	chr4	130308642	130308842	+	1	NA	NA	NA	-36	NM_010174	14077	Mm.388886	NM_010174	ENSMUSG00000028773	Fabp3	Fabph-1|Fabph-4|Fabph1|Fabph4|H-FABP|Mdgi	fatty acid binding protein 3, muscle and heart	protein-coding	0.055000	0.562189	-36(GGCTATTTAAAG,-,0.00),-34(CTATTTAAAGAG,+,0.00)
mm_10682.1	chr2	22588896	22589096	+	1	NA	NA	NA	-33331	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.025000	0.437811	
mm_91322.1	chr10	25098003	25098203	-	1	NA	NA	NA	102067	NM_001347460	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.010000	0.373134	-76(CTTTATATAGTT,+,0.00)
mm_141710.1	chr17	34000209	34000409	-	1	NA	NA	NA	24	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.105000	0.621891	
mm_5205.1	chr1	13426745	13426945	-	1	NA	NA	NA	-52762	NM_008678	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.020000	0.482587	
mm_75442.1	chr8	47533309	47533509	-	1	NA	NA	NA	61	NM_177240	320714	Mm.39461	NM_177240	ENSMUSG00000038102	Trappc11	AW558465|D030016E14Rik|R75422	trafficking protein particle complex 11	protein-coding	0.085000	0.681592	
mm_169845.1	chr16	3120566	3120766	-	1	NA	NA	NA	-471732	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.020000	0.467662	
mm_139753.1	chr17	63895957	63896157	+	1	NA	NA	NA	17991	NM_001286415	14158	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.015000	0.467662	
mm_109850.1	chr12	4689853	4690053	-	1	NA	NA	NA	48430	NM_029107	74855	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	0.020000	0.462687	-40(CAACATAAAAGC,-,0.00)
mm_167855.1	chrX	10697333	10697533	-	1	NA	NA	NA	-19932	NM_026524	68041	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	0.010000	0.393035	
mm_62499.1	chr7	101970610	101970810	+	1	NA	NA	NA	867	NM_133947	101706	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	0.025000	0.492537	-93(TGCCTTTAAAGA,-,0.00),-92(GCCTTTAAAGAA,+,0.00),-92(GCCTTTAAAGAA,-,0.00)
mm_78722.1	chr9	41579881	41580081	+	1	NA	NA	NA	-1272	NR_015483	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.010000	0.457711	
mm_36835.1	chr4	106492094	106492294	-	1	NA	NA	NA	49	NM_080458	140475	Mm.135448	NM_080458	ENSMUSG00000025418	Bsnd	-	Bartter syndrome, infantile, with sensorineural deafness (Barttin)	protein-coding	0.015000	0.592040	
mm_121948.1	chr14	24176626	24176826	-	1	NA	NA	NA	69194	NM_001163513	71228	Mm.68971	NM_027726	ENSMUSG00000021782	Dlg5	4933429D20Rik|T25557|mKIAA0583	discs, large homolog 5 (Drosophila)	protein-coding	0.035000	0.606965	
mm_24076.1	chr3	87930203	87930403	+	1	NA	NA	NA	-11	NM_177663	229504	Mm.45744	NM_177663	ENSMUSG00000048039	Isg20l2	4930429N24|C80587	interferon stimulated exonuclease gene 20-like 2	protein-coding	0.100000	0.726368	
mm_42162.1	chr5	112257476	112257676	+	1	NA	NA	NA	1756	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.005000	0.611940	
mm_108813.1	chr12	95692153	95692353	+	1	NA	NA	NA	27	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.030000	0.517413	
mm_155279.1	chrX	61127856	61128056	+	1	NA	NA	NA	11578	NR_030706	331424	Mm.127263	NM_177916	ENSMUSG00000071753	C230004F18Rik	-	RIKEN cDNA C230004F18 gene	ncRNA	0.000000	0.398010	
mm_150473.1	chr19	38734845	38735045	+	1	NA	NA	NA	84292	NM_021315	57753	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	0.010000	0.343284	81(GTCTATTTAAAG,-,0.00),83(CTATTTAAAGTG,+,0.00)
mm_1906.1	chr1	85894352	85894552	+	1	NA	NA	NA	-58	NM_022417	64294	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.070000	0.592040	
mm_91024.1	chr10	17919954	17920154	-	1	NA	NA	NA	28013	NM_001033432	380629	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.020000	0.432836	
mm_20119.1	chr2	121211872	121212072	-	1	NA	NA	NA	40804	NM_001290824	51885	Mm.383499	NM_153387	ENSMUSG00000027263	Tubgcp4	4932441P04Rik|76p|D2Ertd435e|GCP-4	tubulin, gamma complex associated protein 4	protein-coding	0.015000	0.472637	
mm_121307.1	chr14	105921642	105921842	+	1	NA	NA	NA	-24923	NM_011897	24064	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty homolog 2 (Drosophila)	protein-coding	0.015000	0.368159	
mm_130706.1	chr15	100720101	100720301	-	1	NA	NA	NA	276	NM_001161768	207839	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	0.030000	0.492537	
mm_90680.1	chr10	128909533	128909733	+	1	NA	NA	NA	-233	NM_007653	12512	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.060000	0.616915	
mm_106251.1	chr11	117825672	117825872	-	1	NA	NA	NA	-147	NM_027827	71562	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	0.055000	0.606965	
mm_34460.1	chr4	148140394	148140594	+	1	NA	NA	NA	4	NM_027985	71890	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding	0.070000	0.651741	
mm_164255.1	chr15	99671019	99671219	+	1	NA	NA	NA	401	NM_009597	11419	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	0.050000	0.601990	
mm_104169.1	chr11	87421888	87422088	-	1	NA	NA	NA	-5603	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.015000	0.547264	
mm_117408.1	chr13	73963633	73963833	-	1	NA	NA	NA	-129	NM_027704	71164	Mm.66995	NM_027704	ENSMUSG00000069189	Zdhhc11	4933421L13Rik|DHHC-11|Zdhhc20	zinc finger, DHHC domain containing 11	protein-coding	0.010000	0.502488	-83(GCTCATAAAGCC,+,0.00)
mm_163314.1	chr12	6022558	6022758	+	1	NA	NA	NA	646156	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	0.005000	0.462687	
mm_58671.1	chr7	7298739	7298939	+	1	NA	NA	NA	-3	NM_001302386	12727	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2	chloride channel, voltage-sensitive 4	protein-coding	0.065000	0.606965	
mm_81724.1	chr9	112234185	112234385	+	1	NA	NA	NA	8	NR_033431	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA	0.020000	0.507463	
mm_16917.1	chr2	13571917	13572117	-	1	NA	NA	NA	-2294	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.010000	0.378109	84(CCTTTTAAAAAG,+,0.00),84(CCTTTTAAAAAG,-,0.00)
mm_102761.1	chr11	67695117	67695317	-	1	NA	NA	NA	-109	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.015000	0.527363	56(CGGCATTTAAGC,-,0.00),58(GCATTTAAGCCC,+,0.00)
mm_45156.1	chr5	49497102	49497302	-	1	NA	NA	NA	-211543	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.005000	0.343284	
mm_17549.1	chr2	30048759	30048959	-	1	NA	NA	NA	20	NM_001008498	71820	Mm.88053	NM_001008498	ENSMUSG00000039715	Wdr34	3200002I06Rik	WD repeat domain 34	protein-coding	0.135000	0.716418	
mm_95371.1	chr11	49086937	49087137	+	1	NA	NA	NA	20	NM_008330	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.015000	0.452736	
mm_134072.1	chr16	8666440	8666640	-	1	NA	NA	NA	5613	NM_025821	52502	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.000000	0.601990	
mm_84516.1	chr9	67035964	67036164	-	1	NA	NA	NA	7807	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.030000	0.557214	
mm_69239.1	chr7	127769657	127769857	-	1	NA	NA	NA	-58	NM_198424	269999	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0.055000	0.626866	
mm_110825.1	chr12	72628737	72628937	-	1	NA	NA	NA	35991	NM_025522	66375	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.040000	0.587065	
mm_44262.1	chr5	5514812	5515012	-	1	NA	NA	NA	-63	NM_001193659	64945	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding	0.085000	0.671642	
mm_28220.1	chr3	88425017	88425217	-	1	NA	NA	NA	17	NM_001281795	229517	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	0.050000	0.577114	
mm_66619.1	chr7	45474567	45474767	-	1	NA	NA	NA	-7769	NM_007527	12028	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.000000	0.298507	
mm_79639.1	chr9	59554075	59554275	+	1	NA	NA	NA	14635	NM_010421	15211	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.025000	0.467662	
mm_131484.1	chr16	17208786	17208986	+	1	NA	NA	NA	751	NM_001033338	239731	Mm.86671	NM_001033338	ENSMUSG00000071636	Rimbp3	Gm1759|Gm603|RIM-BP3|mKIAA1666	RIMS binding protein 3	protein-coding	0.120000	0.696517	
mm_73092.1	chr8	94533009	94533209	+	1	NA	NA	NA	81	NM_153507	234577	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0.155000	0.805970	
mm_141271.1	chr17	27777843	27778043	-	1	NA	NA	NA	42599	NM_001033279	224647	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0.020000	0.552239	
mm_75010.1	chr8	27413786	27413986	-	1	NA	NA	NA	58	NM_021369	11440	Mm.283137	NM_021369	ENSMUSG00000031491	Chrna6	Acra6|Nica6	cholinergic receptor, nicotinic, alpha polypeptide 6	protein-coding	0.015000	0.557214	
mm_53555.1	chr6	136923828	136924028	+	1	NA	NA	NA	-1748	NM_026983	69187	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding	0.010000	0.477612	
mm_49967.1	chr6	40768317	40768517	+	1	NA	NA	NA	119077	NM_139296	194357	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0.000000	0.268657	52(TGGTATATATGG,-,0.00)
mm_86027.1	chr9	113653487	113653687	-	1	NA	NA	NA	54672	NM_001164678	18571	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0.020000	0.378109	
mm_57157.1	chr6	122742392	122742592	-	1	NA	NA	NA	253	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.025000	0.522388	
mm_143262.1	chr17	65613788	65613988	-	1	NA	NA	NA	-333	NM_013933	30960	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.110000	0.676617	
mm_19413.1	chr2	91710321	91710521	-	1	NA	NA	NA	171	NM_145528	51897	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	0.075000	0.606965	
mm_37450.1	chr4	123411716	123411916	-	1	NA	NA	NA	95	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.120000	0.711443	
mm_57257.1	chr6	123283580	123283780	-	1	NA	NA	NA	6191	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.407960	
mm_95011.1	chr11	31933567	31933767	+	1	NA	NA	NA	-31966	NM_026262	67592	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	0.005000	0.293532	
mm_85245.1	chr9	99035599	99035799	-	1	NA	NA	NA	-9	NM_001080776	382097	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	0.030000	0.611940	
mm_56382.1	chr6	94283741	94283941	-	1	NA	NA	NA	76	NM_001286786	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.135000	0.696517	4(CTGCTTAAAGGG,-,0.00),6(GCTTAAAGGGGC,+,0.00)
mm_132937.1	chr16	49855992	49856192	+	1	NA	NA	NA	438	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.055000	0.671642	
mm_91811.1	chr10	53993715	53993915	-	1	NA	NA	NA	81981	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.010000	0.432836	
mm_7840.1	chr1	132357448	132357648	-	1	NA	NA	NA	10400	NM_001311108	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.040000	0.641791	
mm_67881.1	chr7	99345902	99346102	-	1	NA	NA	NA	7237	NM_009825	12406	Mm.22708	NM_009825	ENSMUSG00000070436	Serpinh1	BERF-1|Cbp1|Cbp2|Hsp47|J6|Serpinh2|gp46	serine (or cysteine) peptidase inhibitor, clade H, member 1	protein-coding	0.015000	0.527363	
mm_3770.1	chr1	156406890	156407090	+	1	NA	NA	NA	-7000	NM_001198597	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.010000	0.492537	
mm_163293.1	chr11	118869351	118869551	-	1	NA	NA	NA	40121	NM_001024931	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.005000	0.457711	
mm_140087.1	chr17	75465184	75465384	+	1	NA	NA	NA	-254	NM_207246	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding	0.010000	0.512438	
mm_94381.1	chr11	5485792	5485992	+	1	NA	NA	NA	-34749	NM_013842	22433	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0.035000	0.582090	
mm_8135.1	chr1	136247393	136247593	-	1	NA	NA	NA	-13213	NM_028872	67313	Mm.36763	NM_028872	ENSMUSG00000041605	5730559C18Rik	1700034M08Rik|4933426C09Rik|AI586180|D1Mgi54	RIKEN cDNA 5730559C18 gene	protein-coding	0.005000	0.547264	
mm_88001.1	chr10	67004990	67005190	+	1	NA	NA	NA	15	NR_110511	102634101	Mm.445258	NR_110511		Gm31763	-	predicted gene, 31763	ncRNA	0.025000	0.407960	-32(CAGTTTAAAAGC,-,0.00)
mm_28034.1	chr3	83773083	83773283	-	1	NA	NA	NA	6862	NM_009144	20319	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0.025000	0.482587	
mm_25375.1	chr3	107211296	107211496	+	1	NA	NA	NA	10336	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.497512	
mm_58026.1	chr6	136661818	136662018	-	1	NA	NA	NA	-25	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.050000	0.626866	
mm_140525.1	chr17	6739717	6739917	-	1	NA	NA	NA	33987	NM_183368	83672	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0.035000	0.606965	
mm_4124.1	chr1	169928711	169928911	+	1	NA	NA	NA	-128	NM_001033185	78465	Mm.291078	NM_001033185	ENSMUSG00000070532	Ccdc190	1700084C01Rik	coiled-coil domain containing 190	protein-coding	0.030000	0.567164	
mm_67442.1	chr7	80387813	80388013	-	1	NA	NA	NA	33	NM_010194	14159	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.045000	0.631841	
mm_20802.1	chr2	144270419	144270619	-	1	NA	NA	NA	53	NM_024225	69178	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	0.145000	0.796020	
mm_49288.1	chr6	17666096	17666296	+	1	NA	NA	NA	-27798	NM_001289624	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.000000	0.323383	
mm_148760.1	chr19	6061258	6061458	+	1	NA	NA	NA	151	NM_013859	29805	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	0.165000	0.721393	
mm_90642.1	chr10	128705092	128705292	+	1	NA	NA	NA	-141	NM_016756	12566	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	0.080000	0.621891	
mm_171648.1	chr4	37343344	37343544	+	1	NA	NA	NA	-391700	NM_001165999	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.050000	0.616915	
mm_71717.1	chr8	61947539	61947739	+	1	NA	NA	NA	19552	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.005000	0.368159	
mm_159252.1	chr2	152511476	152511676	-	1	NA	NA	NA	160	NM_001039120	654457	Mm.389363	NM_001039120	ENSMUSG00000074680	Defb26	EG654457	defensin beta 26	protein-coding	0.000000	0.517413	
mm_88097.1	chr10	68723797	68723997	+	1	NA	NA	NA	151	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.045000	0.661692	
mm_144856.1	chr18	36679123	36679323	+	1	NA	NA	NA	8	NM_026404	67843	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	0.110000	0.636816	
mm_135221.1	chr16	36778663	36778863	-	1	NA	NA	NA	6199	NM_001145899	57738	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.005000	0.333333	
mm_66477.1	chr7	45008639	45008839	-	1	NA	NA	NA	3748	NR_106021	102466218		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0.030000	0.611940	
mm_46257.1	chr5	99363368	99363568	-	1	NA	NA	NA	-110541	NM_145839	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.010000	0.373134	
mm_138060.1	chr17	33929450	33929650	+	1	NA	NA	NA	-344	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.120000	0.666667	
mm_91065.1	chr10	19004915	19005115	-	1	NA	NA	NA	6948	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.030000	0.567164	
mm_44528.1	chr5	24423465	24423665	-	1	NA	NA	NA	-35	NM_007668	12568	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding	0.070000	0.641791	
mm_111942.1	chr12	109033226	109033426	-	1	NA	NA	NA	34891	NM_001163175	380785	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0.100000	0.691542	
mm_78399.1	chr9	28920405	28920605	+	1	NA	NA	NA	1042624	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.005000	0.442786	
mm_82067.1	chr9	122805547	122805747	+	1	NA	NA	NA	100	NM_001013405	382117	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding	0.070000	0.621891	
mm_104543.1	chr11	96747326	96747526	-	1	NA	NA	NA	30129	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.015000	0.567164	
mm_156833.1	chrX	164373240	164373440	+	1	NA	NA	NA	-182	NM_001308489	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.005000	0.452736	-87(AGCTTTTAAAAC,-,0.00),-86(GCTTTTAAAACT,+,0.00),-85(CTTTTAAAACTG,+,0.00)
mm_84145.1	chr9	59404379	59404579	-	1	NA	NA	NA	-50971	NM_175325	102774	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	0.015000	0.388060	
mm_98317.1	chr11	90249376	90249576	+	1	NA	NA	NA	0	NM_026178	67468	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.115000	0.815920	
mm_35206.1	chr4	19553540	19553740	-	1	NA	NA	NA	16464	NM_027769	70568	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	0.005000	0.363184	
mm_22066.1	chr2	168722448	168722648	-	1	NA	NA	NA	11791	NM_001289445	11981	Mm.330819	NM_015731	ENSMUSG00000027546	Atp9a	IIa	ATPase, class II, type 9A	protein-coding	0.005000	0.497512	-34(GCTTTAAAACCC,+,0.00)
mm_64210.1	chr7	141476281	141476481	+	1	NA	NA	NA	1	NM_001252588	64540	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.020000	0.651741	
mm_113233.1	chr13	27245713	27245913	+	1	NA	NA	NA	3383	NM_008865	18776	Mm.37203	NM_008865	ENSMUSG00000038891	Prl3b1	Csh2|Ghd8|PL|Pl-2|Pl2|mPL-II|mplII	prolactin family 3, subfamily b, member 1	protein-coding	0.005000	0.402985	-76(GTCTCTAAAAAA,-,0.00)
mm_46243.1	chr5	99240301	99240501	-	1	NA	NA	NA	12526	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.015000	0.412935	
mm_149475.1	chr19	11747494	11747694	+	1	NA	NA	NA	35	NM_008118	14603	Mm.456	NM_008118	ENSMUSG00000024682	Gif	AV073125	gastric intrinsic factor	protein-coding	0.010000	0.492537	
mm_163021.1	chr11	47097587	47097787	+	1	NA	NA	NA	281615	NM_011891	24052	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.000000	0.378109	
mm_53591.1	chr6	137771907	137772107	+	1	NA	NA	NA	17430	NM_172733	232449	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0.000000	0.482587	
mm_13845.1	chr2	119547684	119547884	+	1	NA	NA	NA	77	NM_019769	56398	Mm.214765	NM_019769	ENSMUSG00000014077	Chp1	1500003O03Rik|AA960066|AI046351|Cahp|Chp|Sid470p|p24|vac	calcineurin-like EF hand protein 1	protein-coding	0.080000	0.686567	
mm_80635.1	chr9	89211328	89211528	+	1	NA	NA	NA	238	NM_026829	107885	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.095000	0.646766	
mm_65394.1	chr7	25116005	25116205	-	1	NA	NA	NA	16355	NM_011138	18987	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.030000	0.651741	
mm_95543.1	chr11	52299980	52300180	+	1	NA	NA	NA	-17066	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.010000	0.547264	
mm_40739.1	chr5	66676111	66676311	+	1	NA	NA	NA	90	NM_011670	22223	Mm.29807	NM_011670	ENSMUSG00000029223	Uchl1	AW822034|C88048|PGP 9.5|PGP9.5|R75593|UCH-L1|UCHL-1|gad	ubiquitin carboxy-terminal hydrolase L1	protein-coding	0.065000	0.616915	
mm_250.1	chr1	19235398	19235598	+	1	NA	NA	NA	23444	NM_001025305	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.015000	0.432836	-82(CAATCTATAAGG,-,0.00),-43(TCCTTTTTAAAG,-,0.00),-41(CTTTTTAAAGTT,+,0.00)
mm_128824.1	chr15	67128920	67129120	-	1	NA	NA	NA	47862	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.005000	0.577114	
mm_168536.1	chr1	16104337	16104537	-	1	NA	NA	NA	-4	NM_011291	19989	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	0.050000	0.497512	
mm_144289.1	chr18	12128760	12128960	+	1	NA	NA	NA	10	NM_024182	66878	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	0.115000	0.696517	
mm_52028.1	chr6	95250169	95250369	+	1	NA	NA	NA	83724	NR_033559	414067	Mm.355990	NR_033559	ENSMUSG00000068180	AY512915	-	cDNA sequence AY512915	ncRNA	0.015000	0.497512	-50(CACTCTTAAAAG,-,0.00)
mm_29472.1	chr3	115669309	115669509	-	1	NA	NA	NA	45646	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.000000	0.497512	
mm_163555.1	chr13	23867898	23868098	+	1	NA	NA	NA	-1020	NR_121611	20504	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	0.020000	0.457711	
mm_156015.1	chrX	107089537	107089737	+	1	NA	NA	NA	302	NM_172435	78826	Mm.74639	NM_172435	ENSMUSG00000050921	P2ry10	5830408N17Rik|Lypsr2|P2Y10	purinergic receptor P2Y, G-protein coupled 10	protein-coding	0.000000	0.417910	
mm_80841.1	chr9	98003355	98003555	+	1	NA	NA	NA	35	NR_110443	66737	Mm.445908	NR_110443	ENSMUSG00000090255	4921534H16Rik	-	RIKEN cDNA 4921534H16 gene	ncRNA	0.010000	0.452736	20(CCTTTTAAGTCT,+,0.00)
mm_148324.1	chr18	84037299	84037499	-	1	NA	NA	NA	49163	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.015000	0.467662	
mm_70256.1	chr8	3515288	3515488	+	1	NA	NA	NA	4	NM_015801	50767	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0.070000	0.606965	
mm_133664.1	chr16	92052201	92052401	+	1	NA	NA	NA	-6021	NM_017391	53881	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0.015000	0.522388	
mm_1083.1	chr1	59544118	59544318	+	1	NA	NA	NA	27954	NM_001013771	381260	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0.015000	0.427861	
mm_117327.1	chr13	68581962	68582162	-	1	NA	NA	NA	42	NM_001308475	210009	Mm.205514	NM_172480	ENSMUSG00000034617	Mtrr	4732420G08|MSR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding	0.150000	0.726368	
mm_111483.1	chr12	98737458	98737658	-	1	NA	NA	NA	-153	NM_001146199	24000	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0.165000	0.820896	
mm_36925.1	chr4	108225232	108225432	-	1	NA	NA	NA	-7410	NM_001167936	230590	Mm.301798	NM_001167936	ENSMUSG00000034645	Zyg11a	BC022150	zyg-11 family member A, cell cycle regulator	protein-coding	0.010000	0.522388	
mm_94081.1	chr10	128492903	128493103	-	1	NA	NA	NA	6	NM_001317220	17904	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.015000	0.562189	-56(CCTTATATGGGC,+,0.00)
mm_70290.1	chr8	3664665	3664865	+	1	NA	NA	NA	-997	NM_026985	69189	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0.015000	0.492537	-16(TGTTCTAAAAGG,-,0.00)
mm_171102.1	chr3	133518176	133518376	-	1	NA	NA	NA	26114	NM_001346736	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.030000	0.477612	
mm_127408.1	chr15	101254165	101254365	+	1	NA	NA	NA	-12581	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.155000	0.820896	
mm_115396.1	chr13	113794511	113794711	+	1	NA	NA	NA	103	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.080000	0.562189	
mm_12310.1	chr2	69114623	69114823	+	1	NA	NA	NA	-21077	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.025000	0.417910	
mm_19421.1	chr2	91931566	91931766	-	1	NA	NA	NA	36	NM_001291481	17242	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.070000	0.671642	
mm_56529.1	chr6	99522596	99522796	-	1	NA	NA	NA	-1703	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.175000	0.751244	
mm_151522.1	chr19	58740396	58740596	+	1	NA	NA	NA	11609	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.025000	0.482587	
mm_101735.1	chr11	43311011	43311211	-	1	NA	NA	NA	63350	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.000000	0.472637	14(GCTTTAAAACAA,+,0.00)
mm_64908.1	chr7	16048017	16048217	-	1	NA	NA	NA	-23728	NM_001347559	666528	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.100000	0.557214	
mm_79530.1	chr9	57708546	57708746	+	1	NA	NA	NA	77	NM_153799	353190	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	0.120000	0.716418	
mm_83228.1	chr9	42343775	42343975	-	1	NA	NA	NA	56054	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.020000	0.532338	
mm_9747.1	chr1	180580520	180580720	-	1	NA	NA	NA	-6581	NR_105869	102466761		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	0.035000	0.522388	
mm_144704.1	chr18	34863268	34863468	+	1	NA	NA	NA	2161	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.035000	0.517413	
mm_103466.1	chr11	76468335	76468535	-	1	NA	NA	NA	30	NM_001291186	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.025000	0.646766	
mm_108284.1	chr12	79132266	79132466	+	1	NA	NA	NA	1578	NM_009705	11847	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.005000	0.417910	
mm_49444.1	chr6	29319179	29319379	+	1	NA	NA	NA	139	NM_001289664	330277	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	0.010000	0.522388	
mm_128909.1	chr15	73487213	73487413	-	1	NA	NA	NA	-25247	NM_001081066	105841	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.000000	0.547264	
mm_134180.1	chr16	10960611	10960811	-	1	NA	NA	NA	32410	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.020000	0.522388	
mm_70282.1	chr8	3621456	3621656	+	1	NA	NA	NA	5	NM_001195244	100503890	Mm.254898	NM_001195244	ENSMUSG00000087687	Pet100	2900053A13Rik	PET100 homolog	protein-coding	0.065000	0.567164	
mm_166161.1	chr5	16553411	16553611	+	1	NA	NA	NA	16	NM_010427	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.025000	0.512438	
mm_153795.1	chr19	46031472	46031672	-	1	NA	NA	NA	8049	NM_010697	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.000000	0.313433	
mm_168766.1	chr12	12390483	12390683	+	1	NA	NA	NA	1892	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	0.040000	0.502488	
mm_50428.1	chr6	48842575	48842775	+	1	NA	NA	NA	1019	NM_001098271	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.020000	0.577114	
mm_155559.1	chrX	75382319	75382519	+	1	NA	NA	NA	20	NM_026126	67391	Mm.126404	NM_026126	ENSMUSG00000031198	Fundc2	4833415N24Rik|DC44|HCBP6	FUN14 domain containing 2	protein-coding	0.075000	0.636816	
mm_85416.1	chr9	103449806	103450006	-	1	NA	NA	NA	26328	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.025000	0.452736	
mm_96276.1	chr11	62862012	62862212	+	1	NA	NA	NA	14989	NM_001291441	213980	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	0.005000	0.343284	
mm_128713.1	chr15	63985430	63985630	-	1	NA	NA	NA	71069	NR_029414	74460	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0.000000	0.298507	
mm_36238.1	chr4	63154743	63154943	-	1	NA	NA	NA	-671	NM_007443	11699	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.010000	0.497512	34(TCTTTTCAAGCG,+,0.00)
mm_118544.1	chr14	17659108	17659308	+	1	NA	NA	NA	-1752	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.020000	0.567164	
mm_1502.1	chr1	72236506	72236706	+	1	NA	NA	NA	-24299	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.060000	0.577114	
mm_88601.1	chr10	79793599	79793799	+	1	NA	NA	NA	127	NM_001161747	18483	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0.150000	0.791045	
mm_57404.1	chr6	124865152	124865352	-	1	NA	NA	NA	-1335	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.010000	0.542289	
mm_54036.1	chr6	12749060	12749260	-	1	NA	NA	NA	93	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding	0.095000	0.696517	
mm_2524.1	chr1	106712452	106712652	+	1	NA	NA	NA	1738	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.070000	0.656716	
mm_34342.1	chr4	143719351	143719551	+	1	NA	NA	NA	0	NM_001085412	277666	Mm.332023	NM_001085412	ENSMUSG00000046435	Gm13078	OTTMUSG00000010322	predicted gene 13078	protein-coding	0.005000	0.487562	-33(GAGTATATAAGG,-,0.00)
mm_22093.1	chr2	168955135	168955335	-	1	NA	NA	NA	352	NM_009564	22722	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	0.070000	0.616915	
mm_157118.1	chrX	9442544	9442744	-	1	NA	NA	NA	26680	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.487562	
mm_78765.1	chr9	43309807	43310007	+	1	NA	NA	NA	-856	NM_023655	72169	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	0.000000	0.447761	
mm_7763.1	chr1	131139218	131139418	-	1	NA	NA	NA	-1084	NM_145508	226419	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.015000	0.467662	
mm_11663.1	chr2	35256307	35256507	+	1	NA	NA	NA	48	NM_001206368	227753	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.095000	0.721393	
mm_93381.1	chr10	105574298	105574498	-	1	NA	NA	NA	81	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.095000	0.671642	
mm_69397.1	chr7	132270308	132270508	-	1	NA	NA	NA	-45256	NR_028578	100043682	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	ENSMUSG00000073814	predicted gene 10584	ncRNA	0.025000	0.512438	
mm_39537.1	chr5	21424778	21424978	+	1	NA	NA	NA	-25	NM_177869	330050	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	0.040000	0.527363	27(CTCCTTTAAAAC,-,0.00),29(CCTTTAAAACTA,+,0.00)
mm_53551.1	chr6	136872336	136872536	+	1	NA	NA	NA	3387	NM_008597	17313	Mm.243085	NM_008597	ENSMUSG00000030218	Mgp	Mglap	matrix Gla protein	protein-coding	0.020000	0.427861	
mm_136387.1	chr16	93127828	93128028	-	1	NA	NA	NA	225261	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.010000	0.482587	
mm_161955.1	chr19	6910065	6910265	+	1	NA	NA	NA	467	NM_026306	67674	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.085000	0.611940	
mm_153532.1	chr19	41896044	41896244	-	1	NA	NA	NA	9	NM_199447	107094	Mm.276044	NM_199447	ENSMUSG00000035049	Rrp12	AA408556|AA536972|mKIAA0690	ribosomal RNA processing 12 homolog (S. cerevisiae)	protein-coding	0.060000	0.577114	
mm_7271.1	chr1	96872072	96872272	-	1	NA	NA	NA	-1	NM_172658	227394	Mm.11662	NM_172658	ENSMUSG00000040693	Slco4c1	9530051F04|C330017E21Rik|OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20|oatp-R	solute carrier organic anion transporter family, member 4C1	protein-coding	0.060000	0.601990	
mm_74611.1	chr8	12573134	12573334	-	1	NA	NA	NA	185	NM_024279	78634	Mm.116871	NM_024279	ENSMUSG00000010435	Spaca7	1700094C09Rik	sperm acrosome associated 7	protein-coding	0.030000	0.532338	
mm_127811.1	chr15	5063650	5063850	-	1	NA	NA	NA	23	NM_001243837	109828	Mm.208034	NM_001243837	ENSMUSG00000079105	C7	A530026G17|Gm1238	complement component 7	protein-coding	0.000000	0.482587	-32(GGCTTTATAAGT,-,0.00)
mm_164447.1	chr16	49913156	49913356	+	1	NA	NA	NA	57602	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.025000	0.472637	
mm_163469.1	chr12	102743506	102743706	-	1	NA	NA	NA	55	NM_001142937	64113	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	0.115000	0.666667	
mm_163095.1	chr11	69734869	69735069	-	1	NA	NA	NA	23664	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.010000	0.542289	
mm_169538.1	chr1	50812361	50812561	+	1	NA	NA	NA	-115062	NM_019790	56363	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	0.030000	0.527363	-32(GTGCATAAAAAC,-,0.00),33(GCTTTAAGAACC,+,0.00)
mm_37170.1	chr4	117178669	117178869	-	1	NA	NA	NA	3	NM_001290662	73804	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.010000	0.477612	
mm_137037.1	chr17	17890599	17890799	+	1	NA	NA	NA	2875	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.000000	0.383085	
mm_46138.1	chr5	93044945	93045145	-	1	NA	NA	NA	-23	NM_175270	78088	Mm.245085	NM_175270	ENSMUSG00000045314	Sowahb	5730467H21Rik|Ankrd56	sosondowah ankyrin repeat domain family member B	protein-coding	0.110000	0.781095	
mm_14898.1	chr2	149830760	149830960	+	1	NA	NA	NA	77	NM_001085521	433485	Mm.330649	NM_001085521	ENSMUSG00000074736	Syndig1	AW123113|DSPC2|Gm14134|H2C20orf39|OTTMUSG00000015750|Tmem90b	synapse differentiation inducing 1	protein-coding	0.125000	0.761194	
mm_109074.1	chr12	104345454	104345654	+	1	NA	NA	NA	7068	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.005000	0.477612	
mm_120654.1	chr14	70531563	70531763	+	1	NA	NA	NA	842	NM_145219	213469	Mm.41708	NM_145219	ENSMUSG00000033595	Lgi3	AI841179|AW049851	leucine-rich repeat LGI family, member 3	protein-coding	0.005000	0.587065	
mm_154901.1	chrX	20928552	20928752	+	1	NA	NA	NA	2903	NM_008823	18636	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	0.010000	0.497512	
mm_3095.1	chr1	134415648	134415848	+	1	NA	NA	NA	84	NM_001306069	72674	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.145000	0.746269	
mm_45111.1	chr5	45450116	45450316	-	1	NA	NA	NA	13	NM_024236	110391	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	0.095000	0.646766	
mm_162310.1	chr1	37344260	37344460	-	1	NA	NA	NA	-24857	NM_001290798	269180	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.010000	0.547264	
mm_54063.1	chr6	13871597	13871797	-	1	NA	NA	NA	128	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0.025000	0.422886	-6(CCTTTACAGGGC,+,0.00)
mm_66005.1	chr7	30562860	30563060	-	1	NA	NA	NA	224	NM_025498	66340	Mm.86557	NM_025498	ENSMUSG00000036835	Psenen	1700023M09Rik|Pen-2	presenilin enhancer gamma secretase subunit	protein-coding	0.060000	0.552239	
mm_140676.1	chr17	12992079	12992279	-	1	NA	NA	NA	80	NM_001113533	60532	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.155000	0.786070	
mm_21426.1	chr2	158229128	158229328	-	1	NA	NA	NA	-4	NM_177657	228846	Mm.187574	NM_177657	ENSMUSG00000037813	D630003M21Rik	-	RIKEN cDNA D630003M21 gene	protein-coding	0.070000	0.726368	
mm_23693.1	chr3	68691962	68692162	+	1	NA	NA	NA	638	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.010000	0.532338	
mm_150917.1	chr19	46075885	46076085	+	1	NA	NA	NA	138	NM_001039351	70769	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	0.145000	0.646766	
mm_67408.1	chr7	80074781	80074981	-	1	NA	NA	NA	376	NR_045695	100859962	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.015000	0.532338	
mm_55267.1	chr6	53820631	53820831	-	1	NA	NA	NA	94	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.105000	0.686567	
mm_105693.1	chr11	107794594	107794794	-	1	NA	NA	NA	-230	NM_019431	54377	Mm.103724	NM_019431	ENSMUSG00000020723	Cacng4	AI413107|AW491861	calcium channel, voltage-dependent, gamma subunit 4	protein-coding	0.185000	0.845771	
mm_28466.1	chr3	90695591	90695791	-	1	NA	NA	NA	30	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.010000	0.457711	-33(GCCTATAAATAC,-,0.00)
mm_113759.1	chr13	44741985	44742185	+	1	NA	NA	NA	10814	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.005000	0.343284	
mm_23600.1	chr3	65109235	65109435	+	1	NA	NA	NA	-33	NM_010597	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.025000	0.592040	
mm_82025.1	chr9	121857642	121857842	+	1	NA	NA	NA	258	NM_019814	56295	Mm.347915	NM_019814	ENSMUSG00000038412	Higd1a	2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1	HIG1 domain family, member 1A	protein-coding	0.135000	0.721393	
mm_97287.1	chr11	76201994	76202194	+	1	NA	NA	NA	38	NM_027773	116972	Mm.188413	NM_027773	ENSMUSG00000069808	Fam57a	2310047D13Rik|4932415L08Rik|5430402E13Rik|5430420K21Rik|Wdt3	family with sequence similarity 57, member A	protein-coding	0.145000	0.751244	
mm_166284.1	chr5	96997362	96997562	+	1	NA	NA	NA	-227	NM_080708	140780	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.150000	0.771144	
mm_143263.1	chr17	65613830	65614030	-	1	NA	NA	NA	-375	NM_013933	30960	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.120000	0.681592	
mm_112565.1	chr13	13526045	13526245	+	1	NA	NA	NA	-64264	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.005000	0.497512	
mm_108827.1	chr12	95747026	95747226	+	1	NA	NA	NA	54900	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.015000	0.402985	
mm_95404.1	chr11	49846645	49846845	+	1	NA	NA	NA	-6	NM_001163671	26420	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0.095000	0.686567	
mm_67295.1	chr7	79143214	79143414	-	1	NA	NA	NA	5746	NM_001045489	17304	Mm.1451	NM_008594	ENSMUSG00000030605	Mfge8	AA408458|AI325141|MFG-E8|MP47|Mfgm|P47|SED1|lactadherin	milk fat globule-EGF factor 8 protein	protein-coding	0.035000	0.557214	
mm_20655.1	chr2	132103332	132103532	-	1	NA	NA	NA	41676	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.035000	0.542289	
mm_98603.1	chr11	95831431	95831631	+	1	NA	NA	NA	7031	NM_153104	237928	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.015000	0.562189	
mm_108254.1	chr12	78248489	78248689	+	1	NA	NA	NA	21934	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.005000	0.333333	
mm_85834.1	chr9	110476516	110476716	-	1	NA	NA	NA	78	NM_177771	270201	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0.100000	0.676617	
mm_32439.1	chr4	107253795	107253995	+	1	NA	NA	NA	-39	NM_028394	72938	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25	heat shock protein family B (small), member 11	protein-coding	0.145000	0.781095	
mm_65036.1	chr7	18560518	18560718	-	1	NA	NA	NA	6687	NM_001037168	545925	Mm.440302	NM_001037168	ENSMUSG00000070797	Psg27	EG545925|cea15	pregnancy-specific glycoprotein 27	protein-coding	0.015000	0.452736	
mm_106831.1	chr12	8003196	8003396	+	1	NA	NA	NA	25619	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.000000	0.467662	
mm_91086.1	chr10	19015165	19015365	-	1	NA	NA	NA	145	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.135000	0.746269	
mm_92133.1	chr10	66123964	66124164	-	1	NA	NA	NA	0	NR_038039	69433	Mm.23366	NR_038039	ENSMUSG00000100000	1700023F02Rik	AV205046	RIKEN cDNA 1700023F02 gene	ncRNA	0.005000	0.507463	
mm_16266.1	chr2	173659506	173659706	+	1	NA	NA	NA	-67	NR_027957	100043911	Mm.260590	NM_001033179	ENSMUSG00000055897	Ppp4r1l-ps	1700007P14Rik|5830403E09Rik|C030010B13Rik|Ppp4r1l	protein phosphatase 4, regulatory subunit 1-like, pseudogene	pseudo	0.075000	0.681592	
mm_65347.1	chr7	24989861	24990061	-	1	NA	NA	NA	-2294	NR_106014	102465634		NR_106014	ENSMUSG00000099258	Mir7047	Gm27270|mmu-mir-7047	microRNA 7047	ncRNA	0.015000	0.537313	
mm_169887.1	chr16	46154973	46155173	-	1	NA	NA	NA	4	NM_001304528	11615	Mm.330692	NM_001304528	ENSMUSG00000048087	Gm4737	AL024110|EG11615|ENSMUSG00000048087	predicted gene 4737	protein-coding	0.050000	0.422886	
mm_84962.1	chr9	83805243	83805443	-	1	NA	NA	NA	962	NM_148941	83603	Mm.83949	NM_148941	ENSMUSG00000032262	Elovl4	-	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	protein-coding	0.030000	0.492537	
mm_69866.1	chr7	141454974	141455174	-	1	NA	NA	NA	-114	NM_025802	66853	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0.055000	0.661692	
mm_62978.1	chr7	120173730	120173930	+	1	NA	NA	NA	-28	NM_028085	72074	Mm.23165	NM_028085	ENSMUSG00000030909	Anks4b	2010013E14Rik|AI956809|Harp	ankyrin repeat and sterile alpha motif domain containing 4B	protein-coding	0.015000	0.552239	
mm_88199.1	chr10	70109926	70110126	+	1	NA	NA	NA	12905	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.015000	0.447761	
mm_171937.1	chr5	65863613	65863813	+	1	NA	NA	NA	144	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.025000	0.532338	
mm_33830.1	chr4	135626607	135626807	+	1	NA	NA	NA	52	NR_027909	73937	Mm.292326	NM_028688	ENSMUSG00000086788	1700029M20Rik	4930406E24Rik	RIKEN cDNA 1700029M20 gene	ncRNA	0.050000	0.552239	
mm_87222.1	chr10	40349396	40349596	+	1	NA	NA	NA	188	NM_001291816	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.150000	0.751244	
mm_25705.1	chr3	122483683	122483883	+	1	NA	NA	NA	57898	NR_106117	102465764		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.040000	0.587065	
mm_157744.1	chrX	73242905	73243105	-	1	NA	NA	NA	125	NM_183094	72891	Mm.104764	NM_183094	ENSMUSG00000031362	Xlr4c	2900036K24Rik	X-linked lymphocyte-regulated 4C	protein-coding	0.040000	0.517413	
mm_94655.1	chr11	17051886	17052086	+	1	NA	NA	NA	52	NM_029861	380686	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	0.050000	0.646766	
mm_148170.1	chr18	78057302	78057502	-	1	NA	NA	NA	-134	NM_001101038	620235	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0.030000	0.601990	
mm_83322.1	chr9	44185300	44185500	-	1	NA	NA	NA	48646	NM_007619	12402	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.000000	0.368159	-46(GTCCTTTAAAAG,-,0.00),-45(TCCTTTAAAAGT,-,0.00),-44(CCTTTAAAAGTA,+,0.00)
mm_142810.1	chr17	51171539	51171739	-	1	NA	NA	NA	7713	NM_028162	72238	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.010000	0.393035	
mm_116527.1	chr13	45812287	45812487	-	1	NA	NA	NA	152604	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.000000	0.343284	-67(TCTTTTAGATCC,+,0.00)
mm_79214.1	chr9	49102636	49102836	+	1	NA	NA	NA	-43	NM_030709	80893	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	0.010000	0.532338	
mm_38593.1	chr4	141825463	141825663	-	1	NA	NA	NA	442	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.005000	0.542289	
mm_146353.1	chr18	82564718	82564918	+	1	NA	NA	NA	10310	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.020000	0.572139	
mm_31980.1	chr4	89050210	89050410	+	1	NA	NA	NA	3	NR_033533	100040617	Mm.171720	NR_033533	ENSMUSG00000085183	Gm12603	OTTMUSG00000007693	predicted gene 12603	ncRNA	0.000000	0.368159	
mm_60099.1	chr7	35186264	35186464	+	1	NA	NA	NA	-21	NM_017394	53896	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0.130000	0.796020	
mm_5864.1	chr1	53774027	53774227	-	1	NA	NA	NA	11088	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.015000	0.482587	
mm_8288.1	chr1	143093489	143093689	-	1	NA	NA	NA	-547108	NM_020025	26878	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.025000	0.467662	
mm_99117.1	chr11	100141242	100141442	+	1	NA	NA	NA	2357	NM_001313963	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.040000	0.542289	
mm_21789.1	chr2	164856891	164857091	-	1	NA	NA	NA	717	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.065000	0.651741	
mm_129931.1	chr15	84557726	84557926	-	1	NA	NA	NA	-3	NM_177630	223732	Mm.6471	NM_177630	ENSMUSG00000055745	Ldoc1l	BC058638|Mar6|Mart6	leucine zipper, down-regulated in cancer 1-like	protein-coding	0.090000	0.651741	
mm_23275.1	chr3	51660287	51660487	+	1	NA	NA	NA	-792	NM_174995	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.020000	0.527363	
mm_165083.1	chr19	46868882	46869082	-	1	NA	NA	NA	93369	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.025000	0.557214	
mm_48056.1	chr5	136565422	136565622	-	1	NA	NA	NA	459	NM_001291239	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.080000	0.651741	
mm_30069.1	chr3	137954675	137954875	-	1	NA	NA	NA	26774	NM_011932	26377	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.040000	0.512438	
mm_28273.1	chr3	88832459	88832659	-	1	NA	NA	NA	-72	NR_015498	319830	Mm.400394	NR_015498		1500004A13Rik	5430404N14Rik|BB132176	RIKEN cDNA 1500004A13 gene	ncRNA	0.045000	0.562189	
mm_97438.1	chr11	78178026	78178226	+	1	NA	NA	NA	-23	NM_001291235	68385	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	0.040000	0.621891	
mm_119676.1	chr14	52654566	52654766	+	1	NA	NA	NA	-158971	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.020000	0.452736	
mm_36647.1	chr4	94554983	94555183	-	1	NA	NA	NA	1713	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.010000	0.393035	-60(TTTTTTAGAGAG,+,0.00)
mm_98600.1	chr11	95830661	95830861	+	1	NA	NA	NA	6261	NM_153104	237928	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.065000	0.587065	
mm_172532.1	chr7	87095824	87096024	-	1	NA	NA	NA	99459	NM_001105190	621430	Mm.469903	NM_001105190	ENSMUSG00000090362	Vmn2r79	EG621430	vomeronasal 2, receptor 79	protein-coding	0.010000	0.512438	-28(CCCCTTATAAGC,-,0.00),-26(CCTTATAAGCAC,+,0.00)
mm_22492.1	chr3	6107397	6107597	+	1	NA	NA	NA	512946	NM_027048	69347	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	0.015000	0.447761	
mm_14265.1	chr2	128591139	128591339	+	1	NA	NA	NA	-1102	NM_001310641	241634	Mm.297682	NM_001310641	ENSMUSG00000074812	Spdye4c	Gm355|SpeedyB3|SpyB3	speedy/RINGO cell cycle regulator family, member E4C	protein-coding	0.020000	0.517413	
mm_16177.1	chr2	172551429	172551629	+	1	NA	NA	NA	538	NM_001159696	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding	0.080000	0.636816	
mm_110472.1	chr12	51829765	51829965	-	1	NA	NA	NA	-329	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.150000	0.726368	-35(GGCTTTAAAAGT,-,0.00),-34(GCTTTAAAAGTC,+,0.00)
mm_83687.1	chr9	50555039	50555239	-	1	NA	NA	NA	-1	NM_133217	170752	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	0.015000	0.482587	
mm_60736.1	chr7	45439515	45439715	+	1	NA	NA	NA	4776	NM_030678	14936	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0.055000	0.597015	
mm_151534.1	chr19	58943297	58943497	+	1	NA	NA	NA	-28	NM_178689	226265	Mm.103154	NM_178689	ENSMUSG00000048029	Eno4	6430537H07Rik	enolase 4	protein-coding	0.085000	0.611940	
mm_44515.1	chr5	24344479	24344679	-	1	NA	NA	NA	7025	NM_013569	16511	Mm.6539	NM_013569	ENSMUSG00000038319	Kcnh2	AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding	0.010000	0.597015	
mm_137497.1	chr17	26971711	26971911	+	1	NA	NA	NA	-1368	NM_001005916	474156	Mm.328890	NM_001005916	ENSMUSG00000079605	Zbtb9	3930402F13Rik	zinc finger and BTB domain containing 9	protein-coding	0.025000	0.547264	
mm_152251.1	chr19	8723030	8723230	-	1	NA	NA	NA	239	NM_001161413	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.085000	0.557214	
mm_167152.1	chr7	131322283	131322483	-	1	NA	NA	NA	-91	NM_008411	16433	Mm.142717	NM_008411	ENSMUSG00000040205	Cuzd1	Erg-1|Itmap1|Uo-44|Usg|Utczp	CUB and zona pellucida-like domains 1	protein-coding	0.005000	0.542289	
mm_25268.1	chr3	104794193	104794393	+	1	NA	NA	NA	5259	NM_007484	11853	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0.010000	0.597015	
mm_3019.1	chr1	133365029	133365229	+	1	NA	NA	NA	1557	NM_175443	214253	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	0.000000	0.527363	
mm_48437.1	chr5	140623362	140623562	-	1	NA	NA	NA	16121	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.055000	0.656716	
mm_2883.1	chr1	131838703	131838903	+	1	NA	NA	NA	10791	NM_173865	98396	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	0.015000	0.557214	
mm_30603.1	chr4	6393575	6393775	+	1	NA	NA	NA	27995	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.015000	0.373134	
mm_165547.1	chr3	9801680	9801880	-	1	NA	NA	NA	31899	NM_053182	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.010000	0.462687	
mm_20144.1	chr2	121473915	121474115	-	1	NA	NA	NA	8	NM_001081975	100034361	Mm.270393	NM_001081975	ENSMUSG00000048222	Mfap1b	-	microfibrillar-associated protein 1B	protein-coding	0.070000	0.562189	
mm_12345.1	chr2	69748860	69749060	+	1	NA	NA	NA	25872	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.025000	0.353234	
mm_30408.1	chr3	152253707	152253907	-	1	NA	NA	NA	12513	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.000000	0.348259	
mm_89603.1	chr10	95991277	95991477	+	1	NA	NA	NA	50714	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.005000	0.353234	
mm_80963.1	chr9	103085844	103086044	+	1	NA	NA	NA	-26130	NM_173781	270192	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.015000	0.527363	
mm_30302.1	chr3	149077252	149077452	-	1	NA	NA	NA	-122717	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.040000	0.477612	
mm_109500.1	chr12	111451884	111452084	+	1	NA	NA	NA	9323	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.010000	0.507463	
mm_73209.1	chr8	95713429	95713629	+	1	NA	NA	NA	-2384	NM_001035123	66083	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	0.010000	0.522388	
mm_93111.1	chr10	91118104	91118304	-	1	NA	NA	NA	5759	NM_133668	18674	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.030000	0.452736	
mm_63050.1	chr7	121864958	121865158	+	1	NA	NA	NA	20	NR_073548	20277	Mm.7709	NM_011325	ENSMUSG00000030873	Scnn1b	-	sodium channel, nonvoltage-gated 1 beta	protein-coding	0.060000	0.656716	
mm_124085.1	chr14	78717098	78717298	-	1	NA	NA	NA	7891	NM_001081336	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.015000	0.402985	
mm_33143.1	chr4	125125026	125125226	+	1	NA	NA	NA	2755	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.010000	0.577114	
mm_76541.1	chr8	87960618	87960818	-	1	NA	NA	NA	-1123	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	0.125000	0.731343	
mm_154041.1	chr19	53791743	53791943	-	1	NA	NA	NA	-100388	NM_011050	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.030000	0.557214	
mm_30710.1	chr4	12113361	12113561	+	1	NA	NA	NA	24091	NM_198957	77604	Mm.474129	NM_198957	ENSMUSG00000052137	Rbm12b2	AV299215|C430048L16Rik|Rbm12bb	RNA binding motif protein 12 B2	protein-coding	0.035000	0.601990	-34(GGGTATAAATGG,-,0.00)
mm_131391.1	chr16	14215770	14215970	+	1	NA	NA	NA	52595	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.010000	0.532338	
mm_164744.1	chr17	73948284	73948484	+	1	NA	NA	NA	1812	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.010000	0.447761	
mm_98021.1	chr11	84957708	84957908	+	1	NA	NA	NA	54	NM_007607	12351	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	0.055000	0.611940	
mm_39345.1	chr5	8893806	8894006	+	1	NA	NA	NA	185	NM_008830	18670	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.135000	0.746269	
mm_84473.1	chr9	66795271	66795471	-	1	NA	NA	NA	52	NM_177583	208117	Mm.41291	NM_177583	ENSMUSG00000032375	Aph1b	2310057K14Rik|Aph1c	aph1 homolog B, gamma secretase subunit	protein-coding	0.110000	0.681592	
mm_41833.1	chr5	104299189	104299389	+	1	NA	NA	NA	2	NM_008318	15891	Mm.4987	NM_008318	ENSMUSG00000029306	Ibsp	BSP|BSP II|BSPII|Bsp2	integrin binding sialoprotein	protein-coding	0.030000	0.557214	
mm_103092.1	chr11	69920829	69921029	-	1	NA	NA	NA	18	NM_001166594	276770	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.145000	0.786070	
mm_171921.1	chr5	5783127	5783327	-	1	NA	NA	NA	-33910	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.015000	0.477612	
mm_100186.1	chr11	116671576	116671776	+	1	NA	NA	NA	16	NR_027820	66293	Mm.432051	NM_025472	ENSMUSG00000020812	1810032O08Rik	-	RIKEN cDNA 1810032O08 gene	ncRNA	0.090000	0.572139	
mm_152424.1	chr19	10675039	10675239	-	1	NA	NA	NA	2932	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.015000	0.587065	
mm_124116.1	chr14	79481382	79481582	-	1	NA	NA	NA	-214	NM_018765	22380	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0.155000	0.786070	
mm_163460.1	chr12	99874647	99874847	-	1	NA	NA	NA	8695	NM_030172	78767	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	0.020000	0.527363	
mm_138442.1	chr17	35126335	35126535	+	1	NA	NA	NA	33	NM_033477	114585	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	0.095000	0.686567	
mm_158680.1	chrX	160138230	160138430	-	1	NA	NA	NA	100	NM_008810	18597	Mm.34775	NM_008810	ENSMUSG00000031299	Pdha1	Pdha-1	pyruvate dehydrogenase E1 alpha 1	protein-coding	0.100000	0.676617	
mm_146057.1	chr18	69677852	69678052	+	1	NA	NA	NA	-247607	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.050000	0.552239	
mm_132459.1	chr16	36159949	36160149	+	1	NA	NA	NA	3238	NM_173869	268885	Mm.187847	NM_173869	ENSMUSG00000059657	Stfa2l1	-	stefin A2 like 1	protein-coding	0.015000	0.358209	
mm_59649.1	chr7	28168785	28168985	+	1	NA	NA	NA	-863	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.025000	0.512438	
mm_91855.1	chr10	59221680	59221880	-	1	NA	NA	NA	67	NM_001024911	103080	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	0.105000	0.716418	
mm_29400.1	chr3	108904590	108904790	-	1	NA	NA	NA	7014	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.030000	0.477612	
mm_100879.1	chr11	5976104	5976304	-	1	NA	NA	NA	20446	NM_019661	56418	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0.030000	0.656716	
mm_56772.1	chr6	116461062	116461262	-	1	NA	NA	NA	16	NM_009662	11689	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0.065000	0.691542	
mm_25001.1	chr3	97651691	97651891	+	1	NA	NA	NA	-6421	NM_182997	108097	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.035000	0.532338	
mm_158823.1	chrX	167446458	167446658	-	1	NA	NA	NA	-63809	NM_001313758	110639	Mm.272955	NM_026662	ENSMUSG00000025742	Prps2	2610101M19Rik|AA589463|AI464149|Prps-2	phosphoribosyl pyrophosphate synthetase 2	protein-coding	0.010000	0.527363	
mm_149419.1	chr19	11435132	11435332	+	1	NA	NA	NA	-8326	NM_021718	60361	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	0.005000	0.343284	
mm_119114.1	chr14	31019099	31019299	+	1	NA	NA	NA	61	NM_001081251	66923	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	0.140000	0.781095	
mm_61317.1	chr7	68133709	68133909	+	1	NA	NA	NA	130424	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.020000	0.527363	
mm_41262.1	chr5	89027929	89028129	+	1	NA	NA	NA	140769	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.005000	0.447761	
mm_57669.1	chr6	128487991	128488191	-	1	NA	NA	NA	38629	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.020000	0.487562	
mm_653.1	chr1	40430087	40430287	+	1	NA	NA	NA	617	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.025000	0.497512	
mm_112888.1	chr13	20860536	20860736	+	1	NA	NA	NA	66523	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.020000	0.422886	
mm_2446.1	chr1	99772334	99772534	+	1	NA	NA	NA	-331	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0.035000	0.512438	
mm_90942.1	chr10	12964128	12964328	-	1	NA	NA	NA	31	NM_029075	74732	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.115000	0.776119	
mm_109161.1	chr12	108187078	108187278	+	1	NA	NA	NA	7440	NM_009832	12454	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	0.020000	0.363184	
mm_66946.1	chr7	61985806	61986006	-	1	NA	NA	NA	-3547	NR_037287	100526507		NR_037287	ENSMUSG00000092850	Mir344g	mir-344g|mmu-mir-344g	microRNA 344g	ncRNA	0.000000	0.368159	
mm_152163.1	chr19	7288414	7288614	-	1	NA	NA	NA	6933	NM_001080390	13728	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.000000	0.402985	
mm_13446.1	chr2	105162890	105163090	+	1	NA	NA	NA	36461	NM_144783	22431	Mm.389339	NM_144783	ENSMUSG00000016458	Wt1	D630046I19Rik|Wt-1	Wilms tumor 1 homolog	protein-coding	0.010000	0.482587	
mm_67865.1	chr7	99141180	99141380	-	1	NA	NA	NA	-136	NM_178635	78610	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.065000	0.621891	
mm_157687.1	chrX	60147799	60147999	-	1	NA	NA	NA	-199	NM_001289730	109904	Mm.93796	NM_133197	ENSMUSG00000031139	Mcf2	B230117G22Rik|Dbl|Mcf-2	mcf.2 transforming sequence	protein-coding	0.010000	0.437811	
mm_54168.1	chr6	23248281	23248481	-	1	NA	NA	NA	-117	NM_028462	73191	Mm.55115	NM_028462	ENSMUSG00000029697	Fezf1	3110069A13Rik|Fez|Zfp312-like|fez-like	Fez family zinc finger 1	protein-coding	0.035000	0.432836	
mm_26036.1	chr3	135522825	135523025	+	1	NA	NA	NA	37314	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.020000	0.557214	
mm_132115.1	chr16	31664014	31664214	+	1	NA	NA	NA	179	NM_001252434	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.160000	0.805970	
mm_54780.1	chr6	41541709	41541909	-	1	NA	NA	NA	20033	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.457711	-65(GCATTTATAGAG,+,0.00)
mm_17599.1	chr2	30807455	30807655	-	1	NA	NA	NA	-422	NM_170592	66617	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	0.080000	0.621891	
mm_18584.1	chr2	66271121	66271321	-	1	NA	NA	NA	-14604	NM_001290669	73668	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	0.000000	0.288557	
mm_5377.1	chr1	30948996	30949196	-	1	NA	NA	NA	614	NR_002688	433406	Mm.389003	NR_002688		Gm13363	OTTMUSG00000011595	predicted gene 13363	pseudo	0.100000	0.691542	
mm_60153.1	chr7	39487256	39487456	+	1	NA	NA	NA	-30410	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.015000	0.527363	
mm_1095.1	chr1	59705576	59705776	+	1	NA	NA	NA	868	NR_028521	100217421		NR_028521		Snord11	MBII-95	small nucleolar RNA, C/D box 11	snoRNA	0.005000	0.383085	
mm_82227.1	chr9	3027302	3027502	-	1	NA	NA	NA	11341	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.030000	0.373134	
mm_66590.1	chr7	45406906	45407106	-	1	NA	NA	NA	1046	NM_010596	16495	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	0.080000	0.666667	
mm_101903.1	chr11	49187082	49187282	-	1	NA	NA	NA	-93	NM_172793	237754	Mm.130787	NM_172793	ENSMUSG00000040283	Btnl9	B430208I01|Btn3|D330012D11Rik	butyrophilin-like 9	protein-coding	0.025000	0.452736	
mm_169306.1	chr14	104715745	104715945	-	1	NA	NA	NA	76698	NR_015593	320249	Mm.320725	NR_015593		D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0.075000	0.582090	-65(AACTTTAAATGG,-,0.00)
mm_17012.1	chr2	18888199	18888399	-	1	NA	NA	NA	-86481	NR_131254	66774	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.010000	0.427861	
mm_14718.1	chr2	143919109	143919309	+	1	NA	NA	NA	3878	NM_019771	56431	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.005000	0.398010	
mm_95985.1	chr11	58982031	58982231	+	1	NA	NA	NA	4038	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.050000	0.646766	
mm_54511.1	chr6	35511424	35511624	-	1	NA	NA	NA	28364	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.318408	
mm_137351.1	chr17	25212747	25212947	+	1	NA	NA	NA	-9735	NM_028789	74154	Mm.267353	NM_028789	ENSMUSG00000015127	Unkl	1300004G08Rik	unkempt family like zinc finger	protein-coding	0.010000	0.402985	
mm_12737.1	chr2	78884202	78884402	+	1	NA	NA	NA	15255	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.005000	0.328358	
mm_143863.1	chr17	84186495	84186695	-	1	NA	NA	NA	1352	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.135000	0.716418	
mm_73024.1	chr8	94152643	94152843	+	1	NA	NA	NA	136	NM_013603	17751	Mm.2064	NM_013603	ENSMUSG00000031760	Mt3	Mt-3	metallothionein 3	protein-coding	0.075000	0.666667	-33(GGCTATAAAAGC,-,0.00)
mm_70657.1	chr8	14604484	14604684	+	1	NA	NA	NA	-283952	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.025000	0.417910	
mm_147834.1	chr18	62548766	62548966	-	1	NA	NA	NA	-45	NM_177829	328971	Mm.312675	NM_177829	ENSMUSG00000044176	Spink10	A230091H23Rik	serine peptidase inhibitor, Kazal type 10	protein-coding	0.080000	0.587065	
mm_100245.1	chr11	117277095	117277295	+	1	NA	NA	NA	10949	NM_001113487	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.010000	0.547264	
mm_113364.1	chr13	32965227	32965427	+	1	NA	NA	NA	-186	NM_011454	20708	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	0.025000	0.497512	
mm_40989.1	chr5	77266277	77266477	+	1	NA	NA	NA	883	NM_011263	19712	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.150000	0.786070	
mm_35132.1	chr4	11321983	11322183	-	1	NA	NA	NA	48	NM_001081201	381510	Mm.331486	NM_001081201	ENSMUSG00000045205	Dpy19l4	Gm1023|Narg3	dpy-19-like 4 (C. elegans)	protein-coding	0.095000	0.706468	
mm_31508.1	chr4	53631383	53631583	+	1	NA	NA	NA	12	NM_001195284	319636	Mm.103464	NM_176966	ENSMUSG00000054752	Fsd1l	A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl|OTTMUSG00000007002	fibronectin type III and SPRY domain containing 1-like	protein-coding	0.135000	0.731343	
mm_27301.1	chr3	48609028	48609228	-	1	NA	NA	NA	-28	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo	0.055000	0.587065	
mm_89503.1	chr10	94057264	94057464	+	1	NA	NA	NA	21363	NM_053072	13998	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	0.000000	0.323383	
mm_162183.1	chrX	102906358	102906558	-	1	NA	NA	NA	11	NM_029378	70887	Mm.29672	NM_027591	ENSMUSG00000031323	Dmrtc1a	1700030H14Rik|4921520P21Rik|DMRTC1|Dmrt8.1	DMRT-like family C1a	protein-coding	0.000000	0.447761	
mm_79285.1	chr9	51115903	51116103	+	1	NA	NA	NA	2	NM_019493	56057	Mm.431317	NM_019493	ENSMUSG00000032056	Btg4	C86116|PC3B	B cell translocation gene 4	protein-coding	0.005000	0.447761	-31(GCATATATGGAG,+,0.00)
mm_1022.1	chr1	58753597	58753797	+	1	NA	NA	NA	23145	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.010000	0.442786	-33(GCATTTAAAAGG,-,0.00)
mm_23697.1	chr3	68693939	68694139	+	1	NA	NA	NA	2615	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.025000	0.572139	
mm_145799.1	chr18	65302847	65303047	+	1	NA	NA	NA	54086	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.030000	0.477612	
mm_89185.1	chr10	86346028	86346228	+	1	NA	NA	NA	45716	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.010000	0.407960	
mm_32078.1	chr4	98113259	98113459	+	1	NA	NA	NA	269906	NM_053157	94043	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.015000	0.383085	
mm_27095.1	chr3	30190269	30190469	-	1	NA	NA	NA	-177165	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.000000	0.417910	
mm_134751.1	chr16	23157131	23157331	-	1	NA	NA	NA	10695	NM_009605	11450	Mm.3969	NM_009605	ENSMUSG00000022878	Adipoq	30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1	adiponectin, C1Q and collagen domain containing	protein-coding	0.050000	0.542289	
mm_71296.1	chr8	41218283	41218483	+	1	NA	NA	NA	-3227	NM_145594	234199	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding	0.010000	0.467662	
mm_31357.1	chr4	47208145	47208345	+	1	NA	NA	NA	233	NM_009928	12819	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.150000	0.771144	
mm_109585.1	chr12	112604036	112604236	+	1	NA	NA	NA	15352	NM_198411	70435	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.020000	0.582090	
mm_64694.1	chr7	4524246	4524446	-	1	NA	NA	NA	-1903	NM_009406	21954	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0.015000	0.507463	
mm_94925.1	chr11	29526314	29526514	+	1	NA	NA	NA	17	NM_133767	76784	Mm.285429	NM_133767	ENSMUSG00000020459	Mtif2	2310038D14Rik|2410112O06Rik|IF-2(Mt)|IF-2mt|IF2(mt)	mitochondrial translational initiation factor 2	protein-coding	0.060000	0.631841	
mm_155434.1	chrX	73494504	73494704	+	1	NA	NA	NA	-8482	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.005000	0.507463	
mm_105392.1	chr11	103374012	103374212	-	1	NA	NA	NA	-10420	NM_001205236	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.025000	0.507463	
mm_24634.1	chr3	94342002	94342202	+	1	NA	NA	NA	3	NM_025416	66198	Mm.180200	NM_025416	ENSMUSG00000028148	Them5	1110007B02Rik|1110038F21Rik	thioesterase superfamily member 5	protein-coding	0.005000	0.557214	
mm_75195.1	chr8	39006089	39006289	-	1	NA	NA	NA	322	NM_030254	80286	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	0.085000	0.666667	
mm_98797.1	chr11	97018662	97018862	+	1	NA	NA	NA	5193	NM_031183	83395	Mm.156282	NM_031183	ENSMUSG00000038560	Sp6	1110025J03Rik|AA591031|AI592962|Epfn|Klf14	trans-acting transcription factor 6	protein-coding	0.120000	0.716418	
mm_63814.1	chr7	133747523	133747723	+	1	NA	NA	NA	12646	NM_001286030	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.030000	0.567164	
mm_106291.1	chr11	118212607	118212807	-	1	NA	NA	NA	35	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.015000	0.572139	
mm_105510.1	chr11	106216214	106216414	-	1	NA	NA	NA	53	NM_026009	67163	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	0.100000	0.611940	
mm_47604.1	chr5	125058289	125058489	-	1	NA	NA	NA	54914	NM_028443	73121	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.090000	0.731343	
mm_136224.1	chr16	90143716	90143916	-	1	NA	NA	NA	1579	NR_033476	100038709	Mm.484070	NR_033476		Gm10789	ENSMUSG00000074924	predicted gene 10789	ncRNA	0.110000	0.746269	
mm_46098.1	chr5	92347231	92347431	-	1	NA	NA	NA	1558	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.025000	0.532338	-56(AGGTCTAAAAGG,-,0.00)
mm_159923.1	chr6	55117760	55117960	-	1	NA	NA	NA	53	NM_001288619	12922	Mm.236081	NM_009953	ENSMUSG00000003476	Crhr2	CRF-R2|CRFR2alpha|CRFR2beta|Crfr2	corticotropin releasing hormone receptor 2	protein-coding	0.125000	0.736318	
mm_166376.1	chr5	128736061	128736261	+	1	NA	NA	NA	-85	NM_021311	57749	Mm.272720	NM_021311	ENSMUSG00000029423	Piwil1	MIWI	piwi-like RNA-mediated gene silencing 1	protein-coding	0.065000	0.696517	
mm_123209.1	chr14	59377524	59377724	-	1	NA	NA	NA	-12134	NM_199015	219132	Mm.479285	NM_199015	ENSMUSG00000068245	Phf11d	D14Ertd668e|Phf11|Phf11l	PHD finger protein 11D	protein-coding	0.010000	0.378109	45(GACTTTAAGAAG,-,0.00)
mm_24295.1	chr3	89302771	89302971	+	1	NA	NA	NA	20008	NM_010108	13638	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0.040000	0.532338	
mm_98647.1	chr11	96251131	96251331	+	1	NA	NA	NA	-429	NR_037977	193022	Mm.169508	NR_037977		Gm53	-	predicted gene 53	ncRNA	0.030000	0.517413	
mm_94159.1	chr10	128745005	128745205	-	1	NA	NA	NA	-1049	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.010000	0.393035	
mm_97607.1	chr11	78949963	78950163	+	1	NA	NA	NA	24772	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.035000	0.616915	
mm_60236.1	chr7	43694997	43695197	+	1	NA	NA	NA	4679	NM_174866	317653	Mm.247377	NM_174866	ENSMUSG00000044737	Klk14	GK14	kallikrein related-peptidase 14	protein-coding	0.000000	0.432836	
mm_78099.1	chr9	19093534	19093734	+	1	NA	NA	NA	-27323	NM_146564	258557	Mm.377566	NM_146564	ENSMUSG00000059303	Olfr836	MOR152-3	olfactory receptor 836	protein-coding	0.005000	0.512438	-21(CCTCTTATAAGC,+,0.00),-19(TCTTATAAGCAC,+,0.00)
mm_103947.1	chr11	84067681	84067881	-	1	NA	NA	NA	576	NM_019819	56405	Mm.240885	NM_019819	ENSMUSG00000018648	Dusp14	1110014C10Rik|2310042C07Rik|D11Ertd395e|MKP-L|Mkp6	dual specificity phosphatase 14	protein-coding	0.025000	0.467662	
mm_5870.1	chr1	53784228	53784428	-	1	NA	NA	NA	887	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.035000	0.492537	
mm_34013.1	chr4	137993607	137993807	+	1	NA	NA	NA	251	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.135000	0.781095	
mm_14744.1	chr2	144464314	144464514	+	1	NA	NA	NA	-762	NR_038065	171588	Mm.450554	NR_038065	ENSMUSG00000083674	Gm38402	-	zinc finger protein pseudogene	pseudo	0.015000	0.502488	
mm_83054.1	chr9	37545012	37545212	-	1	NA	NA	NA	5857	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.050000	0.587065	
mm_71300.1	chr8	41246389	41246589	+	1	NA	NA	NA	6730	NM_023662	18536	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	0.025000	0.422886	
mm_124379.1	chr14	108800434	108800634	-	1	NA	NA	NA	113705	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.000000	0.268657	
mm_20196.1	chr2	122930091	122930291	-	1	NA	NA	NA	148192	NM_021507	59010	Mm.28986	NM_021507	ENSMUSG00000005803	Sqrdl	0610039J17Rik|4930557M22Rik|SQOR	sulfide quinone reductase-like (yeast)	protein-coding	0.005000	0.417910	
mm_13807.1	chr2	119047088	119047288	+	1	NA	NA	NA	69	NM_029617	76464	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	0.080000	0.611940	
mm_157908.1	chrX	78452557	78452757	-	1	NA	NA	NA	83014	NM_001177966	74910	Mm.159364	NM_001177966	ENSMUSG00000035651	4930480E11Rik	-	RIKEN cDNA 4930480E11 gene	protein-coding	0.005000	0.343284	
mm_59997.1	chr7	30565305	30565505	+	1	NA	NA	NA	-22	NM_145580	101883	Mm.333757	NM_145580	ENSMUSG00000036826	Igflr1	F630003I17Rik|Tmem149	IGF-like family receptor 1	protein-coding	0.005000	0.507463	75(GCTTTAATACCT,+,0.00)
mm_107583.1	chr12	44528821	44529021	+	1	NA	NA	NA	200036	NM_001146031	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.020000	0.457711	
mm_123987.1	chr14	75670959	75671159	-	1	NA	NA	NA	28800	NM_029230	75272	Mm.159483	NM_029230	ENSMUSG00000022002	Erich6b	4930564B18Rik	glutamate rich 6B	protein-coding	0.015000	0.537313	
mm_80632.1	chr9	89211116	89211316	+	1	NA	NA	NA	26	NM_026829	107885	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.090000	0.671642	
mm_3302.1	chr1	136949599	136949799	+	1	NA	NA	NA	3931	NM_001159769	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	0.035000	0.562189	-32(GGATATAAATGC,-,0.00)
mm_172948.1	chr9	81678078	81678278	+	1	NA	NA	NA	-45626	NM_010482	15551	Mm.445308	NM_010482	ENSMUSG00000049511	Htr1b	-	5-hydroxytryptamine (serotonin) receptor 1B	protein-coding	0.035000	0.467662	
mm_68187.1	chr7	104150422	104150622	-	1	NA	NA	NA	34	NM_198624	244179	Mm.189668	NM_198624	ENSMUSG00000051437	Ubqlnl	4922504M18Rik|Gm490	ubiquilin-like	protein-coding	0.010000	0.482587	
mm_68330.1	chr7	106504025	106504225	-	1	NA	NA	NA	-63052	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.383085	-44(ACCTCTATAAGA,-,0.00)
mm_41148.1	chr5	87928168	87928368	+	1	NA	NA	NA	2635	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.015000	0.318408	
mm_25703.1	chr3	122419769	122419969	+	1	NA	NA	NA	89	NM_013867	29815	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0.075000	0.587065	
mm_83237.1	chr9	42399518	42399718	-	1	NA	NA	NA	311	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.020000	0.497512	
mm_19583.1	chr2	101796361	101796561	-	1	NA	NA	NA	1246	NM_175181	72446	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0.095000	0.577114	-38(GTATTTATAGAC,+,0.00)
mm_115070.1	chr13	101533342	101533542	+	1	NA	NA	NA	-135862	NR_046187	78136	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	0.010000	0.497512	
mm_150087.1	chr19	29410880	29411080	+	1	NA	NA	NA	61	NM_021396	58205	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.020000	0.442786	
mm_154363.1	chrM	6938	7138	+	1	NA	NA	NA	NA	NA									0.005000	0.303483	-31(TCTTATATGGCC,+,0.00)
mm_109706.1	chr12	113421551	113421751	+	1	NA	NA	NA	-67914	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.487562	
mm_41126.1	chr5	87786522	87786722	+	1	NA	NA	NA	12172	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.005000	0.407960	
mm_147536.1	chr18	53417961	53418161	-	1	NA	NA	NA	-54	NM_008908	19038	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding	0.105000	0.706468	
mm_91441.1	chr10	33933040	33933240	-	1	NA	NA	NA	18072	NM_028287	72580	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	0.010000	0.407960	53(GGGTATAAATGG,-,0.00)
mm_108734.1	chr12	87985294	87985494	+	1	NA	NA	NA	30914	NM_001270792	100039087	Mm.458830	NM_001270792	ENSMUSG00000096276	Gm2042	-	predicted gene 2042	protein-coding	0.000000	0.492537	-33(GGTTTTATAAGA,-,0.00)
mm_166690.1	chr6	112304968	112305168	+	1	NA	NA	NA	-14749	NR_045986	100503613	Mm.136719	NM_177012		5031434C07Rik	-	RIKEN cDNA 5031434C07 gene	ncRNA	0.025000	0.542289	
mm_27865.1	chr3	79159321	79159521	-	1	NA	NA	NA	-13546	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.005000	0.288557	
mm_154822.1	chrX	16619714	16619914	+	1	NA	NA	NA	116	NM_173740	17161	Mm.21108	NM_173740	ENSMUSG00000025037	Maoa	1110061B18Rik|AA407771	monoamine oxidase A	protein-coding	0.055000	0.557214	-12(CCTTTTAAACCC,+,0.00)
mm_137560.1	chr17	27685126	27685326	+	1	NA	NA	NA	-13	NM_178365	23969	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.115000	0.756219	
mm_149548.1	chr19	12595674	12595874	+	1	NA	NA	NA	792	NR_015503	74333	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	0.050000	0.577114	
mm_162726.1	chr10	40645221	40645421	+	1	NA	NA	NA	15310	NR_133568	70503	Mm.252862	NM_027442	ENSMUSG00000063428	Ddo	5330420D20Rik|5730402C02Rik|AI467244	D-aspartate oxidase	protein-coding	0.000000	0.393035	
mm_82234.1	chr9	3036292	3036492	-	1	NA	NA	NA	2351	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.358209	
mm_38582.1	chr4	141819275	141819475	-	1	NA	NA	NA	6630	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.020000	0.532338	
mm_148030.1	chr18	70053214	70053414	-	1	NA	NA	NA	274	NM_001302798	80718	Mm.246753	NM_030554	ENSMUSG00000024511	Rab27b	2310021G14Rik|B130064M09Rik	RAB27B, member RAS oncogene family	protein-coding	0.055000	0.636816	
mm_38797.1	chr4	148151631	148151831	-	1	NA	NA	NA	194	NM_001163705	50762	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	0.145000	0.776119	
mm_67512.1	chr7	80803127	80803327	-	1	NA	NA	NA	104	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.105000	0.701493	
mm_41154.1	chr5	87929739	87929939	+	1	NA	NA	NA	4206	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.015000	0.457711	
mm_35254.1	chr4	19877799	19877999	-	1	NA	NA	NA	44667	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.030000	0.422886	
mm_146324.1	chr18	80707133	80707333	+	1	NA	NA	NA	940	NM_001164111	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.030000	0.472637	
mm_93306.1	chr10	97643967	97644167	-	1	NA	NA	NA	-1	NM_007884	13516	Mm.148886	NM_007884	ENSMUSG00000019936	Epyc	Dspg3|PG-Lb|SLRR3B	epiphycan	protein-coding	0.000000	0.442786	
mm_132489.1	chr16	36931060	36931260	+	1	NA	NA	NA	-3823	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.000000	0.427861	
mm_148902.1	chr19	6927013	6927213	+	1	NA	NA	NA	-1733	NM_001039494	67077	Mm.251306	NM_001039494	ENSMUSG00000050623	Tex40	1700019N12Rik|A430107B04Rik|MLZ-622	testis expressed 40	protein-coding	0.065000	0.582090	
mm_161950.1	chr19	5568034	5568234	+	1	NA	NA	NA	60	NM_001033448	381201	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0.110000	0.696517	
mm_101457.1	chr11	30255947	30256147	-	1	NA	NA	NA	-36275	NM_175836	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.010000	0.298507	
mm_2143.1	chr1	88095008	88095208	+	1	NA	NA	NA	107	NM_201642	394432	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	0.010000	0.587065	
mm_164488.1	chr16	85139266	85139466	-	1	NA	NA	NA	34341	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.020000	0.472637	-33(CTCTTTATAAAA,-,0.00),-31(CTTTATAAAAGG,-,0.00)
mm_101998.1	chr11	51262854	51263054	-	1	NA	NA	NA	-3	NM_177567	193286	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0.095000	0.641791	
mm_15290.1	chr2	155276872	155277072	+	1	NA	NA	NA	608	NR_046364	66734	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0.080000	0.701493	
mm_120974.1	chr14	78460992	78461192	+	1	NA	NA	NA	61610	NM_001346784	219181	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	0.065000	0.606965	
mm_136359.1	chr16	92776407	92776607	-	1	NA	NA	NA	49567	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.010000	0.497512	
mm_172011.1	chr6	109505244	109505444	-	1	NA	NA	NA	676703	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.065000	0.497512	70(AACTTTAAATGG,-,0.00)
mm_12933.1	chr2	85060808	85061008	+	1	NA	NA	NA	10448	NM_001081260	228140	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	0.025000	0.636816	
mm_19254.1	chr2	84773543	84773743	-	1	NA	NA	NA	1786	NM_009776	12258	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.010000	0.502488	
mm_132005.1	chr16	25752047	25752247	+	1	NA	NA	NA	-49769	NM_001127263	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.040000	0.542289	
mm_115491.1	chr13	3611041	3611241	-	1	NA	NA	NA	-33	NM_134063	105203	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	0.100000	0.631841	
mm_53974.1	chr6	6357043	6357243	-	1	NA	NA	NA	108484	NR_136905	101056138	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0.020000	0.527363	
mm_41385.1	chr5	90768386	90768586	+	1	NA	NA	NA	-32	NM_023785	57349	Mm.293614	NM_023785	ENSMUSG00000029372	Ppbp	2400003M24Rik|AI854500|CTAP3|CTAPIII|Cxcl7|LA-PF4|LDGF|MDGF|NAP-2|NAP-2-L1|Scyb7|TGB|TGB1|THBGB1|b-TG1|beta-TG	pro-platelet basic protein	protein-coding	0.010000	0.492537	-55(CCTTTTATGGTT,+,0.00),-1(CAGTATAAAAAG,-,0.00),21(GCATATAAAGCA,+,0.00)
mm_46226.1	chr5	99021944	99022144	-	1	NA	NA	NA	15035	NM_008926	19092	Mm.263002	NM_008926	ENSMUSG00000029334	Prkg2	AW212535|CGKII|Prkgr2|cGK-II	protein kinase, cGMP-dependent, type II	protein-coding	0.015000	0.562189	
mm_130070.1	chr15	89336791	89336991	-	1	NA	NA	NA	2418	NM_019977	56727	Mm.158200	NM_019977	ENSMUSG00000022613	Miox	0610009I10Rik|AI314022|Aldrl6|C85427|RSOR	myo-inositol oxygenase	protein-coding	0.015000	0.552239	
mm_166858.1	chr7	23357599	23357799	-	1	NA	NA	NA	-28190	NM_001039143	23968	Mm.333653	NM_011860	ENSMUSG00000015721	Nlrp5	Mater|Nalp5|Op1|PAN11	NLR family, pyrin domain containing 5	protein-coding	0.020000	0.517413	
mm_153669.1	chr19	44395977	44396177	-	1	NA	NA	NA	11632	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.005000	0.492537	
mm_25995.1	chr3	134236490	134236690	+	1	NA	NA	NA	95	NM_001004367	319478	Mm.224814	NM_001004367	ENSMUSG00000044365	Cxxc4	9330210J02Rik|C030003J12Rik|Idax	CXXC finger 4	protein-coding	0.065000	0.592040	
mm_87046.1	chr10	28791596	28791796	+	1	NA	NA	NA	123336	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.000000	0.407960	-97(GCTCATATACCC,+,0.00)
mm_108670.1	chr12	86519216	86519416	+	1	NA	NA	NA	97672	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.015000	0.562189	
mm_96906.1	chr11	70458690	70458890	+	1	NA	NA	NA	-832	NM_001029929	574428	Mm.472771	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.015000	0.542289	
mm_63201.1	chr7	125707852	125708052	+	1	NA	NA	NA	76	NM_001081022	233865	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	0.085000	0.676617	
mm_1689.1	chr1	75128451	75128651	+	1	NA	NA	NA	5339	NM_194333	22626	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.010000	0.552239	
mm_105657.1	chr11	107337439	107337639	-	1	NA	NA	NA	133181	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.040000	0.552239	
mm_99534.1	chr11	103192609	103192809	+	1	NA	NA	NA	15839	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.055000	0.621891	
mm_168541.1	chr11	62457074	62457274	-	1	NA	NA	NA	158	NM_177229	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.160000	0.825871	
mm_101670.1	chr11	37235880	37236080	-	1	NA	NA	NA	-291739	NM_011856	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.035000	0.527363	
mm_122269.1	chr14	34358957	34359157	-	1	NA	NA	NA	-3664	NM_183278	69134	Mm.27156	NM_183278	ENSMUSG00000043681	Fam25c	2200001I15Rik|Fam25	family with sequence similarity 25, member C	protein-coding	0.005000	0.527363	
mm_123615.1	chr14	68120686	68120886	-	1	NA	NA	NA	-2966	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.015000	0.507463	
mm_9485.1	chr1	173535908	173536108	-	1	NA	NA	NA	-51	NM_001024721	545384	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	0.015000	0.442786	
mm_64743.1	chr7	4771169	4771369	-	1	NA	NA	NA	1	NM_172895	243822	Mm.333542	NM_172895	ENSMUSG00000092518	Fam71e2	4930401F20Rik	family with sequence similarity 71, member E2	protein-coding	0.015000	0.606965	
mm_34337.1	chr4	143390048	143390248	+	1	NA	NA	NA	-4293	NM_031377	83491	Mm.190607	NM_031377	ENSMUSG00000041805	Pramel1	-	preferentially expressed antigen in melanoma-like 1	protein-coding	0.015000	0.502488	
mm_44447.1	chr5	21665172	21665372	-	1	NA	NA	NA	19288	NM_026034	67211	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	0.020000	0.383085	
mm_155776.1	chrX	96455304	96455504	+	1	NA	NA	NA	-32	NM_001159628	15203	Mm.277092	NM_010417	ENSMUSG00000031209	Heph	C130006F04Rik|Cpl|mKIAA0698|sla	hephaestin	protein-coding	0.010000	0.502488	
mm_7847.1	chr1	132366977	132367177	-	1	NA	NA	NA	871	NM_001311108	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.020000	0.572139	
mm_139085.1	chr17	46752348	46752548	+	1	NA	NA	NA	-234	NM_001305988	72029	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	0.025000	0.492537	
mm_91552.1	chr10	39899129	39899329	-	1	NA	NA	NA	9	NR_033628	213332	Mm.484359	NR_033628		Mfsd4b4	AA474331	major facilitator superfamily domain containing 4B4	pseudo	0.105000	0.691542	
mm_111836.1	chr12	107912558	107912758	-	1	NA	NA	NA	90756	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.010000	0.303483	-16(GTCCTTTTAAAG,-,0.00),-15(TCCTTTTAAAGG,-,0.00),-14(CCTTTTAAAGGG,+,0.00),-14(CCTTTTAAAGGG,-,0.00),-13(CTTTTAAAGGGA,+,0.00)
mm_85477.1	chr9	105828047	105828247	-	1	NA	NA	NA	-62	NM_001102607	245026	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0.055000	0.661692	
mm_170916.1	chr2	3713451	3713651	+	1	NA	NA	NA	93	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.140000	0.721393	
mm_49410.1	chr6	28587330	28587530	+	1	NA	NA	NA	107082	NM_019776	56463	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.010000	0.303483	
mm_61910.1	chr7	90139930	90140130	+	1	NA	NA	NA	9798	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.005000	0.303483	
mm_75467.1	chr8	47974208	47974408	-	1	NA	NA	NA	16243	NM_133791	52357	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.015000	0.447761	
mm_130611.1	chr15	99915836	99916036	-	1	NA	NA	NA	15722	NM_028180	72277	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	0.010000	0.442786	
mm_56620.1	chr6	112696555	112696755	-	1	NA	NA	NA	15	NM_021385	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.135000	0.676617	
mm_155136.1	chrX	50537252	50537452	+	1	NA	NA	NA	-37	NR_131207	102639259	Mm.350898	NR_131207		Gm35612	-	predicted gene, 35612	ncRNA	0.060000	0.492537	
mm_8415.1	chr1	152090148	152090348	-	1	NA	NA	NA	72	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik|ENSMUSG00000073540	RIKEN cDNA 1700025G04 gene	protein-coding	0.125000	0.741294	
mm_42619.1	chr5	118035922	118036122	+	1	NA	NA	NA	8198	NM_021344	57816	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	0.015000	0.512438	
mm_97600.1	chr11	78949081	78949281	+	1	NA	NA	NA	23890	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.020000	0.542289	
mm_58576.1	chr7	4877020	4877220	+	1	NA	NA	NA	67	NM_001101598	664994	Mm.302624	NM_001101598	ENSMUSG00000086784	Isoc2a	Isoc2	isochorismatase domain containing 2a	protein-coding	0.055000	0.611940	
mm_9927.1	chr1	189867083	189867283	-	1	NA	NA	NA	55105	NM_026796	226830	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.010000	0.532338	
mm_13468.1	chr2	105682100	105682300	+	1	NA	NA	NA	-263	NM_001310146	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.075000	0.577114	
mm_41509.1	chr5	92371610	92371810	+	1	NA	NA	NA	-8414	NR_038116	56066	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0.035000	0.542289	
mm_73421.1	chr8	106081311	106081511	+	1	NA	NA	NA	21808	NM_010901	18021	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.000000	0.353234	
mm_104231.1	chr11	88631456	88631656	-	1	NA	NA	NA	12305	NR_131025	68397	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	0.005000	0.388060	
mm_91519.1	chr10	37138572	37138772	-	1	NA	NA	NA	254	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.065000	0.557214	
mm_39876.1	chr5	31077006	31077206	+	1	NA	NA	NA	16421	NM_011773	22784	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.035000	0.616915	
mm_148121.1	chr18	75297222	75297422	-	1	NA	NA	NA	-5	NR_045394	100503117	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.010000	0.582090	
mm_123746.1	chr14	70192107	70192307	-	1	NA	NA	NA	39	NM_001271409	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.085000	0.686567	
mm_106083.1	chr11	116175092	116175292	-	1	NA	NA	NA	-7014	NM_172571	217335	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.025000	0.587065	
mm_106920.1	chr12	8313340	8313540	+	1	NA	NA	NA	7	NM_021429	58240	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.115000	0.741294	
mm_58071.1	chr6	136924020	136924220	-	1	NA	NA	NA	-1940	NM_026983	69187	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding	0.025000	0.532338	
mm_94434.1	chr11	6292205	6292405	+	1	NA	NA	NA	-253	NM_001252288	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.040000	0.537313	
mm_7435.1	chr1	119936219	119936419	-	1	NA	NA	NA	-23151	NM_175106	66343	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	0.010000	0.457711	
mm_35562.1	chr4	41569566	41569766	-	1	NA	NA	NA	-128	NM_175138	68922	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	0.095000	0.686567	
mm_1813.1	chr1	81323307	81323507	+	1	NA	NA	NA	246090	NM_172849	241134	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	0.005000	0.303483	
mm_84801.1	chr9	77251751	77251951	-	1	NA	NA	NA	96019	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.020000	0.512438	
mm_160844.1	chr11	50841412	50841612	-	1	NA	NA	NA	40	NM_001290779	214779	Mm.191846	NM_173387	ENSMUSG00000044296	Zfp879	Znf879	zinc finger protein 879	protein-coding	0.060000	0.646766	
mm_7162.1	chr1	91978388	91978588	-	1	NA	NA	NA	177027	NM_007855	13345	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	0.010000	0.557214	
mm_74448.1	chr8	4213410	4213610	-	1	NA	NA	NA	3802	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.010000	0.592040	
mm_69072.1	chr7	126975715	126975915	-	1	NA	NA	NA	-99	NM_026638	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.025000	0.507463	-10(GTCTTTATAGCA,+,0.00)
mm_73283.1	chr8	104831550	104831750	+	1	NA	NA	NA	6	NM_198171	234669	Mm.443387	NM_198171	ENSMUSG00000050097	Ces2b	-	carboxyesterase 2B	protein-coding	0.020000	0.532338	
mm_105577.1	chr11	106612959	106613159	-	1	NA	NA	NA	-129	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.145000	0.796020	
mm_120764.1	chr14	73370189	73370389	+	1	NA	NA	NA	14982	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.020000	0.482587	
mm_8726.1	chr1	160052976	160053176	-	1	NA	NA	NA	8696	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.005000	0.497512	
mm_141151.1	chr17	26506348	26506548	-	1	NA	NA	NA	2024	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.020000	0.562189	
mm_141192.1	chr17	26972940	26973140	-	1	NA	NA	NA	-139	NM_001005916	474156	Mm.328890	NM_001005916	ENSMUSG00000079605	Zbtb9	3930402F13Rik	zinc finger and BTB domain containing 9	protein-coding	0.085000	0.681592	
mm_128500.1	chr15	52000005	52000205	-	1	NA	NA	NA	-8345	NM_009009	19357	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0.005000	0.432836	
mm_67105.1	chr7	70352820	70353020	-	1	NA	NA	NA	7673	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.015000	0.338308	
mm_126060.1	chr15	77015726	77015926	+	1	NA	NA	NA	6901	NM_001164048	17189	Mm.404074	NM_013593	ENSMUSG00000018893	Mb	AI325109	myoglobin	protein-coding	0.015000	0.601990	
mm_34802.1	chr4	154864296	154864496	+	1	NA	NA	NA	-5189	NM_013783	27390	Mm.116944	NM_013783	ENSMUSG00000058183	Mmel1	Mell1|NEP2|NEPII|Nl1|SEP	membrane metallo-endopeptidase-like 1	protein-coding	0.055000	0.597015	
mm_93155.1	chr10	93124300	93124500	-	1	NA	NA	NA	-36476	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.025000	0.522388	
mm_88096.1	chr10	68723784	68723984	+	1	NA	NA	NA	138	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.050000	0.666667	
mm_42429.1	chr5	115341193	115341393	+	1	NA	NA	NA	46	NM_026933	69076	Mm.27951	NM_026933	ENSMUSG00000029535	Triap1	1810015M01Rik|AU020874|AU043831|P53csv|Wf-1	TP53 regulated inhibitor of apoptosis 1	protein-coding	0.105000	0.646766	
mm_41454.1	chr5	90905531	90905731	+	1	NA	NA	NA	1732	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.010000	0.462687	
mm_105219.1	chr11	102216567	102216767	-	1	NA	NA	NA	13483	NR_106179	102465892		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0.020000	0.417910	
mm_22924.1	chr3	31119941	31120141	+	1	NA	NA	NA	24983	NM_001039090	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.020000	0.412935	42(TTGTTTAAAAGA,-,0.00)
mm_45048.1	chr5	41708024	41708224	-	1	NA	NA	NA	55	NR_132325	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.095000	0.741294	
mm_5543.1	chr1	38491708	38491908	-	1	NA	NA	NA	135436	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.000000	0.363184	
mm_130894.1	chr15	102366899	102367099	-	1	NA	NA	NA	-728	NM_130458	170574	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	0.045000	0.621891	
mm_87782.1	chr10	60296620	60296820	+	1	NA	NA	NA	12259	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.010000	0.368159	
mm_164605.1	chr17	29886833	29887033	+	1	NA	NA	NA	949	NM_001081160	74762	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0.065000	0.646766	
mm_19912.1	chr2	114654831	114655031	-	1	NA	NA	NA	-3	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	0.105000	0.676617	
mm_62905.1	chr7	117380865	117381065	+	1	NA	NA	NA	-14	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.140000	0.771144	
mm_148457.1	chr19	4003277	4003477	+	1	NA	NA	NA	-8	NM_021791	60425	Mm.266972	NM_021791	ENSMUSG00000024871	Doc2g	D830013O18Rik	double C2, gamma	protein-coding	0.000000	0.577114	
mm_142298.1	chr17	40934453	40934653	-	1	NA	NA	NA	-2	NM_031863	83815	Mm.9870	NM_031863	ENSMUSG00000023919	Cenpq	2610528M18Rik	centromere protein Q	protein-coding	0.090000	0.542289	
mm_115050.1	chr13	100127836	100128036	+	1	NA	NA	NA	3081	NM_011420	20595	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	0.025000	0.452736	-56(GACTTTAAGAGA,-,0.00)
mm_16863.1	chr2	11676834	11677034	-	1	NA	NA	NA	-28359	NM_001271498	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.015000	0.482587	
mm_39425.1	chr5	16293235	16293435	+	1	NA	NA	NA	-260160	NM_001289460	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.005000	0.313433	
mm_88765.1	chr10	80335068	80335268	+	1	NA	NA	NA	5023	NM_139292	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.010000	0.532338	
mm_17868.1	chr2	34913932	34914132	-	1	NA	NA	NA	-56	NM_028716	74016	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0.125000	0.800995	
mm_17031.1	chr2	20339336	20339536	-	1	NA	NA	NA	49523	NM_001081006	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.020000	0.452736	
mm_42289.1	chr5	114380733	114380933	+	1	NA	NA	NA	213	NR_138602	117146	Mm.28792	NM_054093	ENSMUSG00000029577	Ube3b	AI449831|AU020130	ubiquitin protein ligase E3B	protein-coding	0.085000	0.656716	
mm_77624.1	chr8	123955671	123955871	-	1	NA	NA	NA	-6506	NM_172288	234865	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	0.025000	0.497512	
mm_167487.1	chr9	3021199	3021399	-	1	NA	NA	NA	17444	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.010000	0.318408	
mm_80072.1	chr9	69760958	69761158	+	1	NA	NA	NA	-88	NR_040765	319970	Mm.186434	NR_040765	ENSMUSG00000097623	B230323A14Rik	-	RIKEN cDNA B230323A14 gene	ncRNA	0.050000	0.636816	
mm_19627.1	chr2	102813561	102813761	-	1	NA	NA	NA	88004	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.005000	0.457711	21(CTCTTTATAGAC,+,0.00),23(CTTTATAGACTC,+,0.00)
mm_155987.1	chrX	106143107	106143307	+	1	NA	NA	NA	-68	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.020000	0.393035	
mm_42356.1	chr5	114911588	114911788	+	1	NA	NA	NA	-11552	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.010000	0.417910	
mm_14095.1	chr2	125188884	125189084	+	1	NA	NA	NA	36384	NM_001079690	20495	Mm.3914	NM_011389	ENSMUSG00000027202	Slc12a1	AI788571|D630042G03Rik|Nkcc2|mBSC1|urehr3	solute carrier family 12, member 1	protein-coding	0.010000	0.417910	
mm_114488.1	chr13	69802252	69802452	+	1	NA	NA	NA	-7530	NM_138596	28077	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	0.010000	0.512438	
mm_114684.1	chr13	80963013	80963213	+	1	NA	NA	NA	-961	NR_015587	319983	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.085000	0.641791	
mm_72988.1	chr8	92961273	92961473	+	1	NA	NA	NA	326	NM_009209	20538	Mm.57040	NM_009209	ENSMUSG00000055368	Slc6a2	NE-T|NET|Slc6a5	solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	protein-coding	0.075000	0.651741	
mm_39301.1	chr5	6951630	6951830	+	1	NA	NA	NA	-352434	NM_027603	70920	Mm.158494	NM_027603	ENSMUSG00000040514	4921511H03Rik	-	RIKEN cDNA 4921511H03 gene	protein-coding	0.000000	0.388060	
mm_139016.1	chr17	45734508	45734708	+	1	NA	NA	NA	-764	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0.005000	0.517413	
mm_79241.1	chr9	50504459	50504659	+	1	NA	NA	NA	246	NR_040714	69631	Mm.414996	NR_040714	ENSMUSG00000101304	Plet1os	2310014F07Rik	placenta expressed transcript 1, opposite strand	ncRNA	0.025000	0.527363	
mm_64413.1	chr7	142533059	142533259	+	1	NA	NA	NA	42	NM_011288	19935	Mm.12144	NM_011288	ENSMUSG00000037772	Mrpl23	L23mrp|Rpl23|Rpl23l	mitochondrial ribosomal protein L23	protein-coding	0.115000	0.731343	
mm_55875.1	chr6	83506811	83507011	-	1	NA	NA	NA	58	NM_013764	27369	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0.120000	0.651741	
mm_1077.1	chr1	59482050	59482250	+	1	NA	NA	NA	3	NM_008057	14369	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.100000	0.751244	
mm_23380.1	chr3	55782411	55782611	+	1	NA	NA	NA	1	NM_010750	17116	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.040000	0.562189	
mm_89158.1	chr10	86039882	86040082	+	1	NA	NA	NA	17828	NM_001347151	69754	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	0.000000	0.288557	
mm_86693.1	chr10	18447227	18447427	+	1	NA	NA	NA	-22654	NM_001163592	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.000000	0.383085	-99(CCCCCTAAAAGT,-,0.00)
mm_64574.1	chr7	144915059	144915259	+	1	NA	NA	NA	-35	NM_028184	72284	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	0.080000	0.542289	
mm_55195.1	chr6	52191606	52191806	-	1	NA	NA	NA	-3	NM_008265	15401	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	0.085000	0.592040	
mm_69166.1	chr7	127214102	127214302	-	1	NA	NA	NA	2594	NM_016754	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.025000	0.522388	
mm_83615.1	chr9	48738885	48739085	-	1	NA	NA	NA	96960	NM_001033324	235320	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0.020000	0.527363	
mm_135965.1	chr16	74826707	74826907	-	1	NA	NA	NA	-415895	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.000000	0.452736	
mm_117585.1	chr13	89661930	89662130	-	1	NA	NA	NA	80482	NM_001081249	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.010000	0.447761	
mm_32027.1	chr4	95215266	95215466	+	1	NA	NA	NA	-163144	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.015000	0.422886	-34(GACTATAAATGG,-,0.00)
mm_15672.1	chr2	163491511	163491711	+	1	NA	NA	NA	-707	NM_001099331	100043899	Mm.442535	NM_001099331	ENSMUSG00000078949	R3hdml	OTTMUSG00000001070	R3H domain containing-like	protein-coding	0.015000	0.611940	
mm_27230.1	chr3	36453417	36453617	-	1	NA	NA	NA	22007	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.010000	0.472637	
mm_171889.1	chr5	36781129	36781329	+	1	NA	NA	NA	15525	NM_026242	67568	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0.030000	0.492537	
mm_99162.1	chr11	100622879	100623079	+	1	NA	NA	NA	24	NM_028024	71966	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0.065000	0.676617	
mm_102041.1	chr11	51931763	51931963	-	1	NA	NA	NA	-35768	NM_029976	52626	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.025000	0.522388	
mm_106914.1	chr12	8216516	8216716	+	1	NA	NA	NA	8489	NM_001167767	68832	Mm.25608	NM_172401	ENSMUSG00000037669	Ldah	1110057K04Rik|mLDAH	lipid droplet associated hydrolase	protein-coding	0.015000	0.437811	
mm_97129.1	chr11	74927617	74927817	+	1	NA	NA	NA	1845	NM_001002764	103677	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.000000	0.333333	
mm_88182.1	chr10	69925882	69926082	+	1	NA	NA	NA	450	NM_009670	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.030000	0.442786	
mm_97001.1	chr11	70844681	70844881	+	1	NA	NA	NA	20	NM_001291142	54189	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0.115000	0.736318	
mm_14708.1	chr2	143071407	143071607	+	1	NA	NA	NA	-6985	NM_020595	57329	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	0.015000	0.447761	
mm_29005.1	chr3	101592427	101592627	-	1	NA	NA	NA	12180	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.035000	0.572139	
mm_130505.1	chr15	98832378	98832578	-	1	NA	NA	NA	-970	NM_016781	19082	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.005000	0.343284	-6(TTTTTTAAAGCT,+,0.00)
mm_85334.1	chr9	102615430	102615630	-	1	NA	NA	NA	10594	NM_001301689	28135	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	0.015000	0.368159	-75(GGCCATTTAAGG,-,0.00),-73(CCATTTAAGGTA,+,0.00)
mm_48773.1	chr5	148509257	148509457	-	1	NA	NA	NA	43431	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.015000	0.502488	
mm_2369.1	chr1	93217366	93217566	+	1	NA	NA	NA	-18431	NM_172463	208777	Mm.271897	NM_172463	ENSMUSG00000047793	Sned1	6720455I24Rik|AI197264|AI642697|D430044C15Rik|SST3|Snep	sushi, nidogen and EGF-like domains 1	protein-coding	0.010000	0.482587	
mm_156801.1	chrX	163909017	163909217	+	1	NA	NA	NA	100	NM_001290379	108012	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	0.110000	0.741294	
mm_79205.1	chr9	48985373	48985573	+	1	NA	NA	NA	88	NM_175482	235323	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	0.135000	0.751244	
mm_148092.1	chr18	73815378	73815578	-	1	NA	NA	NA	-86	NM_145494	107029	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	0.125000	0.771144	
mm_154855.1	chrX	20557464	20557664	+	1	NA	NA	NA	7746	NM_009060	19733	Mm.2118	NM_009060	ENSMUSG00000023070	Rgn	AI265316|GNL|SMP30	regucalcin	protein-coding	0.010000	0.477612	
mm_61649.1	chr7	80404342	80404542	+	1	NA	NA	NA	994	NM_001081454	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.015000	0.577114	
mm_157850.1	chrX	74410892	74411092	-	1	NA	NA	NA	-13620	NM_001161421	16151	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	0.020000	0.512438	
mm_94572.1	chr11	11689979	11690179	+	1	NA	NA	NA	-98	NM_001301865	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.005000	0.457711	
mm_101596.1	chr11	34711831	34712031	-	1	NA	NA	NA	71974	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.005000	0.457711	
mm_22903.1	chr3	30855906	30856106	+	1	NA	NA	NA	56	NM_001286994	71862	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.120000	0.716418	
mm_143222.1	chr17	63294878	63295078	-	1	NA	NA	NA	17995	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.005000	0.383085	
mm_55931.1	chr6	84588505	84588705	-	1	NA	NA	NA	5205	NM_175475	232174	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.115000	0.686567	
mm_18701.1	chr2	71745656	71745856	-	1	NA	NA	NA	26339	NR_037979	381371	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	0.000000	0.492537	
mm_93640.1	chr10	117288409	117288609	-	1	NA	NA	NA	4359	NM_013590	17110	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0.025000	0.497512	
mm_98827.1	chr11	97376381	97376581	+	1	NA	NA	NA	13930	NM_138657	192157	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.015000	0.532338	
mm_10503.1	chr2	15526606	15526806	+	1	NA	NA	NA	227	NM_001310455	102635496		NM_001310455	ENSMUSG00000075520	Malrd1	-	MAM and LDL receptor class A domain containing 1	protein-coding	0.000000	0.462687	
mm_144353.1	chr18	15324853	15325053	+	1	NA	NA	NA	78046	NM_001308647	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.000000	0.348259	
mm_72795.1	chr8	87047602	87047802	+	1	NA	NA	NA	152148	NR_040697	100038706	Mm.334690	NR_040697	ENSMUSG00000099207	Gm10637	ENSMUSG00000074176	predicted gene 10637	ncRNA	0.050000	0.547264	
mm_82881.1	chr9	32492062	32492262	-	1	NA	NA	NA	49290	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.005000	0.442786	
mm_31801.1	chr4	64020086	64020286	+	1	NA	NA	NA	26829	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding	0.020000	0.592040	
mm_89583.1	chr10	95773733	95773933	+	1	NA	NA	NA	-166830	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.035000	0.547264	
mm_236.1	chr1	19208854	19209054	+	1	NA	NA	NA	40	NM_001286340	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.055000	0.452736	
mm_118856.1	chr14	25840058	25840258	+	1	NA	NA	NA	-1997	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.010000	0.626866	
mm_65254.1	chr7	19871317	19871517	-	1	NA	NA	NA	-10118	NM_001033419	330483	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0.025000	0.552239	
mm_140367.1	chr17	86963157	86963357	+	1	NA	NA	NA	146	NM_145491	104215	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.125000	0.800995	
mm_143922.1	chr17	85618400	85618600	-	1	NA	NA	NA	-104	NR_038082	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.075000	0.676617	
mm_80011.1	chr9	67840351	67840551	+	1	NA	NA	NA	55	NM_177184	320528	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.085000	0.666667	
mm_54280.1	chr6	29212166	29212366	-	1	NA	NA	NA	31	NM_011829	23917	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine 5'-phosphate dehydrogenase 1	protein-coding	0.130000	0.781095	
mm_137706.1	chr17	29098635	29098835	+	1	NA	NA	NA	4966	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.055000	0.666667	
mm_63447.1	chr7	127490251	127490451	+	1	NA	NA	NA	1100	NR_106027	102465642		NR_106027	ENSMUSG00000098267	Mir7060	Gm27515|mmu-mir-7060	microRNA 7060	ncRNA	0.005000	0.582090	
mm_146334.1	chr18	81939835	81940035	+	1	NA	NA	NA	52145	NR_039589	100628596		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.015000	0.432836	
mm_141617.1	chr17	32871519	32871719	-	1	NA	NA	NA	19984	NM_207245	240066	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0.005000	0.452736	
mm_86156.1	chr9	118108850	118109050	-	1	NA	NA	NA	41246	NM_026442	67899	Mm.9953	NM_026442	ENSMUSG00000039163	Cmc1	2010110K16Rik|2010312P05Rik|AI596001	COX assembly mitochondrial protein 1	protein-coding	0.010000	0.398010	74(GCTTTTCTAGGG,+,0.00)
mm_43516.1	chr5	137150041	137150241	+	1	NA	NA	NA	-33934	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.507463	
mm_1063.1	chr1	59014100	59014300	+	1	NA	NA	NA	40629	NM_172656	227154	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	0.000000	0.303483	24(TGCCTTATAAGC,-,0.00),26(CCTTATAAGCTA,+,0.00)
mm_52418.1	chr6	113442499	113442699	+	1	NA	NA	NA	30	NM_001243739	67767	Mm.2053	NM_026365	ENSMUSG00000051256	Jagn1	5830427H10Rik	jagunal homolog 1	protein-coding	0.060000	0.606965	
mm_100711.1	chr11	3774622	3774822	-	1	NA	NA	NA	-52495	NM_001302630	74309	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	0.110000	0.791045	
mm_35661.1	chr4	43562080	43562280	-	1	NA	NA	NA	403	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.115000	0.751244	
mm_106699.1	chr12	3572094	3572294	+	1	NA	NA	NA	-197	NM_001162465	13528	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.085000	0.651741	
mm_61165.1	chr7	59228909	59229109	+	1	NA	NA	NA	257	NM_011668	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|mKIAA4216	ubiquitin protein ligase E3A	protein-coding	0.120000	0.671642	
mm_22930.1	chr3	31149846	31150046	+	1	NA	NA	NA	26	NM_008770	18417	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.105000	0.716418	-35(GAGTTTAAAGAG,-,0.00)
mm_164553.1	chr17	13659270	13659470	+	1	NA	NA	NA	-101171	NM_010806	17356	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.010000	0.552239	
mm_92155.1	chr10	67536691	67536891	-	1	NA	NA	NA	-1078	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.050000	0.577114	
mm_167685.1	chr9	84673521	84673721	+	1	NA	NA	NA	-100777	NR_040739	75253	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	0.005000	0.383085	
mm_78110.1	chr9	20581448	20581648	+	1	NA	NA	NA	220	NM_172919	244721	Mm.86627	NM_172919	ENSMUSG00000058192	Zfp846	2210010B09Rik|9130221F13|Znf846	zinc finger protein 846	protein-coding	0.085000	0.686567	
mm_144046.1	chr17	90429153	90429353	-	1	NA	NA	NA	26627	NM_001346958	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.000000	0.333333	
mm_154343.1	chrM	4918	5118	+	1	NA	NA	NA	NA	NA									0.015000	0.388060	
mm_123414.1	chr14	64146784	64146984	-	1	NA	NA	NA	42561	NM_028525	73382	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	0.010000	0.562189	
mm_7633.1	chr1	127732503	127732703	-	1	NA	NA	NA	3190	NM_001033041	266645	Mm.25735	NM_001033041	ENSMUSG00000026348	Acmsd	-	amino carboxymuconate semialdehyde decarboxylase	protein-coding	0.010000	0.492537	
mm_50248.1	chr6	42358190	42358390	+	1	NA	NA	NA	8462	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.005000	0.542289	
mm_17454.1	chr2	28556085	28556285	-	1	NA	NA	NA	7218	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.015000	0.562189	
mm_154101.1	chr19	57008503	57008703	-	1	NA	NA	NA	-28	NM_001177797	226250	Mm.226284	NM_146102	ENSMUSG00000025083	Afap1l2	AU041783|C86904|mKIAA1914	actin filament associated protein 1-like 2	protein-coding	0.050000	0.616915	
mm_150804.1	chr19	44333307	44333507	+	1	NA	NA	NA	81	NM_183216	329065	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0.035000	0.562189	
mm_105119.1	chr11	101119768	101119968	-	1	NA	NA	NA	-25	NM_028933	67998	Mm.33881	NM_026501	ENSMUSG00000017802	Fam134c	1300010M03Rik|4933404C01Rik|AI551748	family with sequence similarity 134, member C	protein-coding	0.115000	0.666667	
mm_107424.1	chr12	35097607	35097807	+	1	NA	NA	NA	50518	NM_001014973	217463	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0.005000	0.363184	
mm_106789.1	chr12	4769281	4769481	+	1	NA	NA	NA	86	NM_028376	382562	Mm.251575	NM_028376	ENSMUSG00000020639	Pfn4	2900024P18Rik	profilin family, member 4	protein-coding	0.070000	0.582090	
mm_129656.1	chr15	81045404	81045604	-	1	NA	NA	NA	59543	NM_153049	223701	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.015000	0.497512	59(CCTTTTAGACTT,+,0.00)
mm_57132.1	chr6	122602998	122603198	-	1	NA	NA	NA	-654	NM_001134391	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.005000	0.422886	
mm_157833.1	chrX	74249730	74249930	-	1	NA	NA	NA	-3296	NM_001290421	192176	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	0.130000	0.701493	
mm_10421.1	chr2	13580628	13580828	+	1	NA	NA	NA	6417	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.005000	0.368159	-98(CTTTTTATAGGA,+,0.00)
mm_167671.1	chr9	74739299	74739499	+	1	NA	NA	NA	-109038	NR_045284	100503019	Mm.482658	NR_045284	ENSMUSG00000066477	Gm16551	-	predicted gene 16551	ncRNA	0.010000	0.507463	
mm_97094.1	chr11	73177118	73177318	+	1	NA	NA	NA	135	NM_029564	76281	Mm.371656	NM_029564	ENSMUSG00000040158	Tax1bp3	1300011C24Rik|TIP-1	Tax1 (human T cell leukemia virus type I) binding protein 3	protein-coding	0.070000	0.606965	
mm_88035.1	chr10	67534419	67534619	+	1	NA	NA	NA	-3350	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.005000	0.527363	
mm_57534.1	chr6	126638546	126638746	-	1	NA	NA	NA	7155	NM_010595	16485	Mm.40424	NM_010595	ENSMUSG00000047976	Kcna1	AI840627|Kca1-1|Kv1.1|MBK1|Mk-1|Shak|mceph	potassium voltage-gated channel, shaker-related subfamily, member 1	protein-coding	0.010000	0.462687	
mm_124648.1	chr15	5143779	5143979	+	1	NA	NA	NA	18	NM_001013367	105787	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	0.135000	0.751244	
mm_27098.1	chr3	30358245	30358445	-	1	NA	NA	NA	151142	NM_021442	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.000000	0.343284	70(AGCCTTAAATGG,-,0.00),72(CCTTAAATGGGT,+,0.00)
mm_165367.1	chr2	126606060	126606260	-	1	NA	NA	NA	12518	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.015000	0.532338	
mm_94025.1	chr10	127668455	127668655	-	1	NA	NA	NA	1432	NR_045171	72243	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0.030000	0.487562	
mm_31258.1	chr4	45121482	45121682	+	1	NA	NA	NA	-13469	NM_001099675	68512	Mm.282081	NM_001099675	ENSMUSG00000078713	Tomm5	1110019J04Rik|Tom5	translocase of outer mitochondrial membrane 5 homolog (yeast)	protein-coding	0.035000	0.532338	
mm_24157.1	chr3	88454860	88455060	+	1	NA	NA	NA	801	NM_013658	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.005000	0.572139	
mm_150141.1	chr19	31085447	31085647	+	1	NA	NA	NA	2706	NM_031249	83410	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	0.000000	0.293532	
mm_2264.1	chr1	91177621	91177821	+	1	NA	NA	NA	-2101	NM_016894	51801	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	0.005000	0.393035	-32(AGGTATAAAAAG,-,0.00)
mm_30808.1	chr4	20041977	20042177	+	1	NA	NA	NA	25	NM_010281	14590	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0.140000	0.736318	
mm_125596.1	chr15	59648566	59648766	+	1	NA	NA	NA	12	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.085000	0.626866	
mm_48153.1	chr5	137151141	137151341	-	1	NA	NA	NA	-35034	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.507463	
mm_105484.1	chr11	105944076	105944276	-	1	NA	NA	NA	-29	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.195000	0.786070	
mm_126497.1	chr15	81744947	81745147	+	1	NA	NA	NA	199	NM_001081016	20286	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	0.090000	0.731343	
mm_28446.1	chr3	90511054	90511254	-	1	NA	NA	NA	-1656	NM_001293782	66511	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	0.015000	0.532338	
mm_77857.1	chr9	5312762	5312962	+	1	NA	NA	NA	4013	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.000000	0.253731	
mm_19206.1	chr2	84513591	84513791	-	1	NA	NA	NA	-6818	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	0.005000	0.383085	-58(TTCTTTTTAAGC,-,0.00)
mm_6204.1	chr1	66765619	66765819	-	1	NA	NA	NA	51876	NM_177645	68691	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.005000	0.328358	
mm_74550.1	chr8	10865011	10865211	-	1	NA	NA	NA	17343	NR_040705	320014	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.000000	0.412935	
mm_143792.1	chr17	81789265	81789465	-	1	NA	NA	NA	-50978	NM_011406	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.010000	0.502488	
mm_10060.1	chr1	193274987	193275187	-	1	NA	NA	NA	-1899	NM_008059	14373	Mm.439721	NM_008059	ENSMUSG00000009633	G0s2	AI255151|AV006465	G0/G1 switch gene 2	protein-coding	0.015000	0.497512	
mm_80574.1	chr9	84007394	84007594	+	1	NA	NA	NA	58713	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.000000	0.402985	
mm_138571.1	chr17	35384111	35384311	+	1	NA	NA	NA	4594	NM_001143689	15015	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	0.020000	0.482587	
mm_106637.1	chr11	120990957	120991157	-	1	NA	NA	NA	276	NM_139059	104318	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0.135000	0.741294	
mm_141862.1	chr17	34804237	34804437	-	1	NA	NA	NA	89	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.020000	0.611940	
mm_103730.1	chr11	79704394	79704594	-	1	NA	NA	NA	-7475	NR_029579	387188		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	0.130000	0.761194	
mm_136296.1	chr16	91484827	91485027	-	1	NA	NA	NA	-288	NM_010508	15975	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	CD118|Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.060000	0.626866	
mm_43484.1	chr5	136908115	136908315	+	1	NA	NA	NA	65	NM_026073	67286	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	0.090000	0.636816	
mm_33271.1	chr4	127987921	127988121	+	1	NA	NA	NA	-23	NM_001281955	329942	Mm.421342	NM_001281955	ENSMUSG00000028804	Csmd2	Gm139	CUB and Sushi multiple domains 2	protein-coding	0.090000	0.597015	
mm_66763.1	chr7	46728701	46728901	-	1	NA	NA	NA	3802	NM_011316	20211	Mm.3489	NM_011316	ENSMUSG00000040017	Saa4	Saa-4|Saa-5	serum amyloid A 4	protein-coding	0.010000	0.457711	
mm_39123.1	chr4	155019298	155019498	-	1	NA	NA	NA	-8414	NM_001113360	269615	Mm.379458	NM_175556	ENSMUSG00000029055	Plch2	A930027K05Rik|PLCeta2|Plc-eta2|Plcl4	phospholipase C, eta 2	protein-coding	0.045000	0.626866	
mm_140572.1	chr17	9669556	9669756	-	1	NA	NA	NA	48	NM_001163836	67543	Mm.26987	NM_026226	ENSMUSG00000046173	Pabpc6	4932702K14Rik|AI428050|Pabpc3	poly(A) binding protein, cytoplasmic 6	protein-coding	0.050000	0.616915	
mm_10033.1	chr1	192718112	192718312	-	1	NA	NA	NA	53007	NM_144881	226861	Mm.145857	NM_144881	ENSMUSG00000037375	Hhat	2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will	hedgehog acyltransferase	protein-coding	0.005000	0.532338	
mm_70161.1	chr7	143549150	143549350	-	1	NA	NA	NA	-130	NM_008672	17955	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	0.085000	0.547264	-89(GCCCCTTTAAAG,-,0.00),-88(CCCCTTTAAAGA,-,0.00),-87(CCCTTTAAAGAA,+,0.00)
mm_9756.1	chr1	180813774	180813974	-	1	NA	NA	NA	-269	NM_008210	15078	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	H3.3A	H3 histone, family 3A	protein-coding	0.105000	0.746269	
mm_19749.1	chr2	104849588	104849788	-	1	NA	NA	NA	162	NM_178695	228413	Mm.259609	NM_178695	ENSMUSG00000027171	Prrg4	9930111I18Rik|TMG4	proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	protein-coding	0.115000	0.701493	
mm_108080.1	chr12	73946220	73946420	+	1	NA	NA	NA	-18210	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.000000	0.293532	36(TTCTTTATATGG,-,0.00),38(CTTTATATGGGT,+,0.00)
mm_80676.1	chr9	90245370	90245570	+	1	NA	NA	NA	25299	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.025000	0.512438	
mm_127622.1	chr15	102462079	102462279	+	1	NA	NA	NA	3009	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.005000	0.572139	
mm_33929.1	chr4	136880487	136880687	+	1	NA	NA	NA	5590	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.075000	0.572139	
mm_136835.1	chr17	12746394	12746594	+	1	NA	NA	NA	5183	NR_027784	104103	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.005000	0.487562	
mm_125810.1	chr15	74931122	74931322	+	1	NA	NA	NA	-23829	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.005000	0.552239	-71(TGCTATAAAAGG,-,0.00)
mm_158533.1	chrX	143923128	143923328	-	1	NA	NA	NA	9896	NM_001110222	13193	Mm.12871	NM_010025	ENSMUSG00000031285	Dcx	Dbct	doublecortin	protein-coding	0.040000	0.542289	
mm_90819.1	chr10	7919902	7920102	-	1	NA	NA	NA	36121	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.005000	0.467662	
mm_9503.1	chr1	173732283	173732483	-	1	NA	NA	NA	9426	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.005000	0.422886	64(CCTCTTATGGCA,+,0.00)
mm_62287.1	chr7	99906311	99906511	+	1	NA	NA	NA	47193	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.005000	0.437811	
mm_55244.1	chr6	52640153	52640353	-	1	NA	NA	NA	47	NM_145567	58875	Mm.286458	NM_145567	ENSMUSG00000029776	Hibadh	6430402H10Rik|AI265272	3-hydroxyisobutyrate dehydrogenase	protein-coding	0.105000	0.726368	
mm_160597.1	chr9	73933532	73933732	-	1	NA	NA	NA	-65	NM_001081153	208898	Mm.41035	NM_001081153	ENSMUSG00000062151	Unc13c	1500037O19Rik|AU019458|D9Ertd414e|Munc13-3|Unc13h3	unc-13 homolog C (C. elegans)	protein-coding	0.005000	0.507463	75(GTCTCTTTAAGA,-,0.00),77(CTCTTTAAGAGC,-,0.00),78(TCTTTAAGAGCT,+,0.00)
mm_81886.1	chr9	119391928	119392128	+	1	NA	NA	NA	-10150	NM_001313757	11481	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	0.005000	0.482587	25(CCCCTTTTAAAG,-,0.00),26(CCCTTTTAAAGG,-,0.00),27(CCTTTTAAAGGG,+,0.00),27(CCTTTTAAAGGG,-,0.00),28(CTTTTAAAGGGA,+,0.00)
mm_140324.1	chr17	86753599	86753799	+	1	NA	NA	NA	-165	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.115000	0.696517	-35(GTTTTTAAAGTG,+,0.00)
mm_71802.1	chr8	68276709	68276909	+	1	NA	NA	NA	281	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.050000	0.616915	
mm_155442.1	chrX	73494843	73495043	+	1	NA	NA	NA	-8143	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.000000	0.462687	
mm_123455.1	chr14	65405089	65405289	-	1	NA	NA	NA	20283	NM_001205075	18155	Mm.16347	NM_010932	ENSMUSG00000045731	Pnoc	N/OFQ|Npnc1|OFQ/N	prepronociceptin	protein-coding	0.015000	0.507463	
mm_47191.1	chr5	120754527	120754727	-	1	NA	NA	NA	-4779	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.035000	0.592040	
mm_56703.1	chr6	114969863	114970063	-	1	NA	NA	NA	-48211	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.085000	0.656716	
mm_96489.1	chr11	67695255	67695455	+	1	NA	NA	NA	29	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.035000	0.641791	
mm_121248.1	chr14	103057214	103057414	+	1	NA	NA	NA	10302	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.045000	0.462687	
mm_106086.1	chr11	116178191	116178391	-	1	NA	NA	NA	-10113	NM_172571	217335	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.030000	0.527363	
mm_25691.1	chr3	122256589	122256789	+	1	NA	NA	NA	11132	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.055000	0.522388	
mm_91124.1	chr10	19591373	19591573	-	1	NA	NA	NA	-476	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.010000	0.472637	
mm_47737.1	chr5	130245847	130246047	-	1	NA	NA	NA	9583	NM_023248	66711	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	Shwachman-Bodian-Diamond syndrome homolog (human)	protein-coding	0.005000	0.442786	
mm_1293.1	chr1	64531961	64532161	+	1	NA	NA	NA	-743	NM_133828	12912	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.055000	0.562189	
mm_145961.1	chr18	67774876	67775076	+	1	NA	NA	NA	100	NM_001039088	72124	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	0.165000	0.766169	
mm_45069.1	chr5	43784669	43784869	-	1	NA	NA	NA	-2620	NM_178729	242960	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0.005000	0.407960	
mm_32206.1	chr4	101507762	101507962	+	1	NA	NA	NA	-114	NM_001164585	72685	Mm.76494	NM_198412	ENSMUSG00000028528	Dnajc6	2810027M23Rik|mKIAA0473	DnaJ heat shock protein family (Hsp40) member C6	protein-coding	0.025000	0.497512	
mm_134076.1	chr16	8672075	8672275	-	1	NA	NA	NA	-22	NM_025821	52502	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.080000	0.671642	
mm_7294.1	chr1	97885557	97885757	-	1	NA	NA	NA	115485	NM_026250	252876	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding	0.005000	0.417910	
mm_87561.1	chr10	56114856	56115056	+	1	NA	NA	NA	8039	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding	0.045000	0.517413	
mm_145413.1	chr18	57878502	57878702	+	1	NA	NA	NA	-76	NM_009194	20496	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0.175000	0.781095	-6(GCCTTTAAACCG,+,0.00)
mm_59369.1	chr7	25694146	25694346	+	1	NA	NA	NA	7244	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.030000	0.507463	
mm_112713.1	chr13	19184892	19185092	+	1	NA	NA	NA	210821	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.467662	
mm_131495.1	chr16	17331301	17331501	+	1	NA	NA	NA	30	NM_001331047	15160	Mm.6609	NM_008223	ENSMUSG00000022766	Serpind1	AA985900|AI303446|HC-II|HCII|Hcf2	serine (or cysteine) peptidase inhibitor, clade D, member 1	protein-coding	0.000000	0.402985	
mm_103936.1	chr11	83649257	83649457	-	1	NA	NA	NA	21	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.010000	0.507463	
mm_2430.1	chr1	95667697	95667897	+	1	NA	NA	NA	-203	NM_001159745	20452	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.065000	0.562189	
mm_153019.1	chr19	31079597	31079797	-	1	NA	NA	NA	-3144	NM_031249	83410	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	0.010000	0.348259	
mm_56962.1	chr6	120038234	120038434	-	1	NA	NA	NA	321	NM_001199083	232341	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0.115000	0.761194	
mm_142392.1	chr17	44880750	44880950	-	1	NA	NA	NA	35	NM_029257	75341	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0.010000	0.427861	
mm_88554.1	chr10	78602446	78602646	+	1	NA	NA	NA	-10582	NM_027875	71709	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	0.000000	0.412935	
mm_134356.1	chr16	16718031	16718231	-	1	NA	NA	NA	-10	NR_045920	74066	Mm.61161	NM_028739		4933404G15Rik	4933401J20Rik	RIKEN cDNA 4933404G15 gene	ncRNA	0.000000	0.427861	
mm_42832.1	chr5	122102555	122102755	+	1	NA	NA	NA	1675	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.010000	0.577114	
mm_172317.1	chr7	106215248	106215448	-	1	NA	NA	NA	-8	NM_029000	74558	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0.005000	0.507463	-6(CCTCATAGAGCC,+,0.00)
mm_138158.1	chr17	34239936	34240136	+	1	NA	NA	NA	1131	NM_010389	15002	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	0.015000	0.467662	
mm_82248.1	chr9	4795821	4796021	-	1	NA	NA	NA	313	NM_001113180	14802	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.040000	0.582090	-93(GGGCATAAAAAG,-,0.00)
mm_28142.1	chr3	87263502	87263702	-	1	NA	NA	NA	-78	NM_030707	80891	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	0.010000	0.477612	
mm_39924.1	chr5	31582133	31582333	+	1	NA	NA	NA	-10836	NR_102275	100740	Mm.23370	NR_102275		AI839979	-	expressed sequence AI839979	ncRNA	0.015000	0.537313	
mm_153994.1	chr19	50620119	50620319	-	1	NA	NA	NA	58427	NM_001252501	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.000000	0.393035	
mm_67978.1	chr7	100658251	100658451	-	1	NA	NA	NA	105	NM_001163185	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.045000	0.592040	
mm_37669.1	chr4	129118629	129118829	-	1	NA	NA	NA	1443	NM_001286083	15444	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	0.020000	0.567164	
mm_138368.1	chr17	35000960	35001160	+	1	NA	NA	NA	153	NM_011690	22321	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.130000	0.746269	
mm_42079.1	chr5	110176490	110176690	+	1	NA	NA	NA	-86	NR_040430	100504007	Mm.441495	NR_040430	ENSMUSG00000086247	Gm15787	OTTMUSG00000026209	predicted gene 15787	ncRNA	0.080000	0.631841	
mm_17006.1	chr2	18799955	18800155	-	1	NA	NA	NA	1763	NR_131254	66774	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.065000	0.577114	
mm_57658.1	chr6	128486836	128487036	-	1	NA	NA	NA	39784	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.010000	0.462687	
mm_143828.1	chr17	84006769	84006969	-	1	NA	NA	NA	8317	NR_130994	78148	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.030000	0.522388	
mm_62786.1	chr7	112519531	112519731	+	1	NA	NA	NA	91925	NM_020606	57342	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding	0.015000	0.522388	
mm_154196.1	chr19	58943485	58943685	-	1	NA	NA	NA	87	NM_001327998	73442	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0.085000	0.651741	
mm_170735.1	chr2	152865887	152866087	-	1	NA	NA	NA	920	NR_049195	100885834		NR_049195	ENSMUSG00000093746	Mir5622	Gm24421|mmu-mir-5622	microRNA 5622	ncRNA	0.020000	0.457711	
mm_104695.1	chr11	97949548	97949748	-	1	NA	NA	NA	36798	NM_028199	72324	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0.015000	0.512438	
mm_134135.1	chr16	10683237	10683437	-	1	NA	NA	NA	102199	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.010000	0.517413	
mm_131324.1	chr16	12704308	12704508	+	1	NA	NA	NA	-106982	NR_040507	75493	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.020000	0.522388	
mm_172657.1	chr8	40362749	40362949	-	1	NA	NA	NA	54798	NM_030110	78506	Mm.169893	NM_030110	ENSMUSG00000039478	Micu3	2900075B16Rik|Efha2	mitochondrial calcium uptake family, member 3	protein-coding	0.025000	0.452736	
mm_44898.1	chr5	35399919	35400119	-	1	NA	NA	NA	10902	NM_010445	15371	Mm.358606	NM_010445	ENSMUSG00000067438	Hmx1	Nkx5-3	H6 homeobox 1	protein-coding	0.095000	0.651741	
mm_123274.1	chr14	61370423	61370623	-	1	NA	NA	NA	-10078	NM_026598	68177	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0.010000	0.368159	
mm_97137.1	chr11	75193731	75193931	+	1	NA	NA	NA	-162	NM_177708	237847	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0.105000	0.726368	
mm_121371.1	chr14	118089588	118089788	+	1	NA	NA	NA	-37442	NM_010024	13190	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	0.065000	0.502488	
mm_58005.1	chr6	136449252	136449452	-	1	NA	NA	NA	-33783	NM_001201390	100502936	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	0.025000	0.497512	
mm_83992.1	chr9	57443021	57443221	-	1	NA	NA	NA	-3007	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.015000	0.522388	
mm_92597.1	chr10	80101063	80101263	-	1	NA	NA	NA	1539	NM_183426	216161	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch homolog 2 (Drosophila)	protein-coding	0.045000	0.621891	
mm_75603.1	chr8	61768738	61768938	-	1	NA	NA	NA	-8740	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.000000	0.373134	
mm_60860.1	chr7	45873077	45873277	+	1	NA	NA	NA	337	NM_133950	68137	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	0.055000	0.641791	
mm_126409.1	chr15	80255948	80256148	+	1	NA	NA	NA	864	NM_009716	11911	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	0.085000	0.666667	
mm_55247.1	chr6	52713522	52713722	-	1	NA	NA	NA	-107	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.050000	0.527363	
mm_123989.1	chr14	75754419	75754619	-	1	NA	NA	NA	-26	NM_177381	338337	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0.135000	0.756219	
mm_60678.1	chr7	45083140	45083340	+	1	NA	NA	NA	8973	NM_026555	52377	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0.025000	0.597015	
mm_109649.1	chr12	112860063	112860263	+	1	NA	NA	NA	753	NM_019925	56696	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.025000	0.507463	
mm_99671.1	chr11	105969595	105969795	+	1	NA	NA	NA	1750	NM_207624	11421	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0.005000	0.512438	
mm_127781.1	chr15	3542276	3542476	-	1	NA	NA	NA	39466	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.000000	0.293532	
mm_52250.1	chr6	106771655	106771855	+	1	NA	NA	NA	2617	NM_001242358	70047	Mm.196332	NM_027296	ENSMUSG00000013736	Trnt1	2410043H24Rik|2610044E04Rik|9830143O18Rik|AA408384|C76540|CGI-47|mt-Trat	tRNA nucleotidyl transferase, CCA-adding, 1	protein-coding	0.010000	0.492537	
mm_48684.1	chr5	146655507	146655707	-	1	NA	NA	NA	-70368	NM_001010941	14738	Mm.153539	NM_008151	ENSMUSG00000041468	Gpr12	Gpcr01|Gpcr12|Gpcr20|Gpcr21	G-protein coupled receptor 12	protein-coding	0.005000	0.527363	
mm_13833.1	chr2	119351112	119351312	+	1	NA	NA	NA	-30	NM_026929	69065	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	0.060000	0.616915	46(GGGTTTAAAGAG,-,0.00),48(GTTTAAAGAGCG,+,0.00)
mm_55134.1	chr6	51270780	51270980	-	1	NA	NA	NA	-970	NR_029719	387166		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.100000	0.691542	
mm_11173.1	chr2	28641252	28641452	+	1	NA	NA	NA	119	NM_022887	64930	Mm.224354	NM_022887	ENSMUSG00000026812	Tsc1	-	tuberous sclerosis 1	protein-coding	0.075000	0.661692	6(GCTTTTCGGGGC,+,0.00)
mm_162824.1	chr10	81160619	81160819	+	1	NA	NA	NA	7001	NM_021501	59004	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0.005000	0.572139	
mm_58128.1	chr6	140513600	140513800	-	1	NA	NA	NA	89601	NM_144920	109135	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.005000	0.552239	
mm_110408.1	chr12	45075031	45075231	-	1	NA	NA	NA	-648	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.015000	0.492537	
mm_58311.1	chr6	146257545	146257745	-	1	NA	NA	NA	244578	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.010000	0.363184	
mm_39685.1	chr5	25848260	25848460	+	1	NA	NA	NA	88387	NM_001004365	242894	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	0.030000	0.502488	
mm_151618.1	chr19	3904616	3904816	-	1	NA	NA	NA	514	NM_016921	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.010000	0.502488	
mm_9299.1	chr1	171638654	171638854	-	1	NA	NA	NA	3146	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.005000	0.442786	-42(TCCCTTTAAAGA,-,0.00),-41(CCCTTTAAAGAT,+,0.00)
mm_77364.1	chr8	119809956	119810156	-	1	NA	NA	NA	30523	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.010000	0.567164	
mm_43278.1	chr5	130845001	130845201	+	1	NA	NA	NA	396309	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.005000	0.457711	
mm_134311.1	chr16	15863257	15863457	-	1	NA	NA	NA	-35	NM_029354	72083	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	0.065000	0.562189	
mm_129302.1	chr15	77306985	77307185	-	1	NA	NA	NA	-32	NM_053104	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.120000	0.711443	
mm_141332.1	chr17	28507324	28507524	-	1	NA	NA	NA	-21275	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.005000	0.552239	
mm_107126.1	chr12	20196566	20196766	+	1	NA	NA	NA	619113	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.120000	0.771144	
mm_119999.1	chr14	55617930	55618130	+	1	NA	NA	NA	-136	NM_020002	56739	Mm.23149	NM_020002	ENSMUSG00000002324	Rec8	Rec8L1|mrec	REC8 meiotic recombination protein	protein-coding	0.035000	0.547264	
mm_37806.1	chr4	130818632	130818832	-	1	NA	NA	NA	26195	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.025000	0.592040	
mm_41349.1	chr5	90503502	90503702	+	1	NA	NA	NA	12888	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.010000	0.378109	
mm_2058.1	chr1	87470199	87470399	+	1	NA	NA	NA	35	NM_028473	73234	Mm.7310	NM_028473	ENSMUSG00000026258	3110079O15Rik	Snorc	RIKEN cDNA 3110079O15 gene	protein-coding	0.035000	0.621891	
mm_72484.1	chr8	83657460	83657660	+	1	NA	NA	NA	4882	NM_018771	67903	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	0.000000	0.467662	
mm_41036.1	chr5	86081092	86081292	+	1	NA	NA	NA	9446	NM_001310639	56792	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.010000	0.353234	
mm_151643.1	chr19	4037852	4038052	-	1	NA	NA	NA	-40	NM_013541	14870	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	0.090000	0.656716	-5(CCCCTTATAAGG,-,0.00),-3(CCTTATAAGGCT,+,0.00)
mm_124399.1	chr14	114945830	114946030	-	1	NA	NA	NA	18	NR_126551	74982		NR_126548		1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	0.025000	0.542289	
mm_124941.1	chr15	12321382	12321582	+	1	NA	NA	NA	-14	NM_025673	66629	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.145000	0.776119	
mm_158820.1	chrX	167351680	167351880	-	1	NA	NA	NA	-21209	NM_001290756	170743	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	0.005000	0.283582	
mm_131880.1	chr16	23224723	23224923	+	1	NA	NA	NA	83	NM_145933	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.045000	0.537313	
mm_158773.1	chrX	167007904	167008104	-	1	NA	NA	NA	62366	NM_001101606	667794	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	0.005000	0.422886	
mm_151259.1	chr19	53949944	53950144	+	1	NA	NA	NA	5168	NM_019658	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.010000	0.298507	
mm_126776.1	chr15	86182030	86182230	+	1	NA	NA	NA	4011	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.025000	0.582090	
mm_110281.1	chr12	32061161	32061361	-	1	NA	NA	NA	18	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.155000	0.810945	
mm_30213.1	chr3	144974943	144975143	-	1	NA	NA	NA	2	NM_207208	99663	Mm.442050	NM_207208	ENSMUSG00000068547	Clca4a	9130020L07Rik|AI504701|Clca4|Clca6	chloride channel accessory 4A	protein-coding	0.000000	0.482587	
mm_144654.1	chr18	34246026	34246226	+	1	NA	NA	NA	-24354	NR_040534	633395	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	ENSMUSG00000073607	ribosomal protein L29 pseudogene	pseudo	0.010000	0.358209	-75(GATCTTAAAAGC,-,0.00)
mm_65247.1	chr7	19844450	19844650	-	1	NA	NA	NA	-7453	NM_001270489	100502736	Mm.445354	NM_001270489	ENSMUSG00000092216	Gm19345	-	predicted gene, 19345	protein-coding	0.015000	0.497512	-35(GGGTTTATAAGG,-,0.00),-33(GTTTATAAGGAC,+,0.00)
mm_86761.1	chr10	19933462	19933662	+	1	NA	NA	NA	-964	NM_008580	26408	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.060000	0.482587	
mm_43234.1	chr5	129941965	129942165	+	1	NA	NA	NA	-44	NM_001001327	69568	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	0.180000	0.845771	
mm_9869.1	chr1	184999826	185000026	-	1	NA	NA	NA	-377	NM_145515	226778	Mm.7445	NM_145515	ENSMUSG00000026620	Mark1	AW491150|B930025N23Rik|Emk3|Par-1c|mKIAA1477|mPar-1c	MAP/microtubule affinity regulating kinase 1	protein-coding	0.190000	0.820896	
mm_8246.1	chr1	138606495	138606695	-	1	NA	NA	NA	13162	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.000000	0.393035	
mm_3013.1	chr1	133363529	133363729	+	1	NA	NA	NA	57	NM_175443	214253	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	0.085000	0.666667	
mm_126872.1	chr15	89376253	89376453	+	1	NA	NA	NA	684	NM_138302	72962	Mm.287977	NM_138302	ENSMUSG00000022615	Tymp	2900072D10Rik|Ecgf1|PD-ECGF|PDECGF|Pdgfec	thymidine phosphorylase	protein-coding	0.010000	0.572139	
mm_142862.1	chr17	51813778	51813978	-	1	NA	NA	NA	-1824	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.015000	0.432836	
mm_44581.1	chr5	24889821	24890021	-	1	NA	NA	NA	-12648	NR_040684	71161	Mm.443533	NR_040684	ENSMUSG00000086446	Prkag2os1	4933426D04Rik	protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1	ncRNA	0.015000	0.552239	
mm_34481.1	chr4	148448521	148448721	+	1	NA	NA	NA	39	NM_020009	56717	Mm.21158	NM_020009	ENSMUSG00000028991	Mtor	2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat	mechanistic target of rapamycin (serine/threonine kinase)	protein-coding	0.110000	0.721393	
mm_151892.1	chr19	5798703	5798903	-	1	NA	NA	NA	-2822	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.005000	0.437811	
mm_138149.1	chr17	34208290	34208490	+	1	NA	NA	NA	3911	NM_011530	21355	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.015000	0.393035	
mm_86383.1	chr9	123861929	123862129	-	1	NA	NA	NA	0	NM_011798	23832	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0.010000	0.402985	
mm_43743.1	chr5	140208741	140208941	+	1	NA	NA	NA	112711	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.025000	0.601990	
mm_14500.1	chr2	132029883	132030083	+	1	NA	NA	NA	5	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.055000	0.676617	
mm_149769.1	chr19	23061376	23061576	+	1	NA	NA	NA	-79750	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.015000	0.482587	
mm_115801.1	chr13	19357206	19357406	-	1	NA	NA	NA	38507	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.542289	
mm_42771.1	chr5	121283586	121283786	+	1	NA	NA	NA	63467	NM_181421	269700	Mm.184589	NM_181421	ENSMUSG00000042744	Gm15800	A130010L24|AU042671|BC019639|EG545802|OTTMUSG00000026283|mKIAA0614	predicted gene 15800	protein-coding	0.005000	0.527363	
mm_88680.1	chr10	80053544	80053744	+	1	NA	NA	NA	156	NM_008162	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.090000	0.691542	
mm_129349.1	chr15	77915345	77915545	-	1	NA	NA	NA	13549	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.015000	0.611940	
mm_76537.1	chr8	87960502	87960702	-	1	NA	NA	NA	-1007	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	0.075000	0.661692	
mm_167076.1	chr7	100681206	100681406	+	1	NA	NA	NA	-18912	NM_001163182	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.015000	0.492537	
mm_61729.1	chr7	81859320	81859520	+	1	NA	NA	NA	419	NM_145375	107769	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.110000	0.706468	
mm_80669.1	chr9	90163011	90163211	+	1	NA	NA	NA	133	NM_001311115	108153	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.070000	0.636816	
mm_83588.1	chr9	48420473	48420673	-	1	NA	NA	NA	-33771	NR_026561	667933	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.025000	0.522388	
mm_45444.1	chr5	67427583	67427783	-	1	NA	NA	NA	116	NM_001164806	666938	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.165000	0.810945	
mm_14578.1	chr2	135659499	135659699	+	1	NA	NA	NA	-76379	NR_015544	320684	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.165000	0.766169	
mm_12304.1	chr2	69109847	69110047	+	1	NA	NA	NA	-25853	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.025000	0.487562	
mm_121882.1	chr14	21500287	21500487	-	1	NA	NA	NA	602	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.090000	0.616915	
mm_83635.1	chr9	49486097	49486297	-	1	NA	NA	NA	28	NM_172770	235330	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	0.055000	0.621891	
mm_15898.1	chr2	164951116	164951316	+	1	NA	NA	NA	2997	NM_013599	17395	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.055000	0.562189	
mm_154262.1	chr19	60769880	60770080	-	1	NA	NA	NA	4405	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.025000	0.402985	
mm_153188.1	chr19	34507036	34507236	-	1	NA	NA	NA	20338	NM_001111100	16889	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.010000	0.402985	
mm_161619.1	chr16	57071002	57071202	-	1	NA	NA	NA	244	NM_183281	69457	Mm.58105	NM_183281	ENSMUSG00000046748	Tmem45a2	2310005G13Rik	transmembrane protein 45A2	protein-coding	0.020000	0.407960	
mm_5907.1	chr1	55000031	55000231	-	1	NA	NA	NA	27347	NM_031179	81898	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	0.015000	0.338308	
mm_42051.1	chr5	108629904	108630104	+	1	NA	NA	NA	194	NM_028223	72392	Mm.258324	NM_028223	ENSMUSG00000013495	Tmem175	3010001K23Rik|AI504381|mTMEM175	transmembrane protein 175	protein-coding	0.090000	0.671642	
mm_19327.1	chr2	90573460	90573660	-	1	NA	NA	NA	7087	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.005000	0.457711	-35(CTCTTTAGAGTG,+,0.00)
mm_108138.1	chr12	76215277	76215477	+	1	NA	NA	NA	31369	NM_019784	80384	Mm.78551	NM_019784	ENSMUSG00000021056	Tex21	4931406F04Rik|4931412D23Rik|4931421K24Rik|tsec-2	testis expressed gene 21	protein-coding	0.015000	0.577114	
mm_13256.1	chr2	98664907	98665107	+	1	NA	NA	NA	1197350	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.030000	0.338308	
mm_168391.1	chr11	27233814	27234014	+	1	NA	NA	NA	448806	NR_002890	654472	Mm.347777	NR_002890		Gm12070	OTTMUSG00000005300	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.000000	0.393035	
mm_93402.1	chr10	107876436	107876636	-	1	NA	NA	NA	35598	NM_001177567	628870	Mm.336090	NM_001177567	ENSMUSG00000091455	Otogl	EG628870|Gm6924	otogelin-like	protein-coding	0.000000	0.393035	
mm_83875.1	chr9	55048670	55048870	-	1	NA	NA	NA	-226	NM_148944	108015	Mm.32694	NM_148944	ENSMUSG00000035200	Chrnb4	Acrb-4|Acrb4	cholinergic receptor, nicotinic, beta polypeptide 4	protein-coding	0.030000	0.611940	
mm_36830.1	chr4	106316070	106316270	-	1	NA	NA	NA	-43	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.160000	0.800995	
mm_138907.1	chr17	43588559	43588759	+	1	NA	NA	NA	2850	NR_045445	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.010000	0.472637	
mm_33394.1	chr4	129820189	129820389	+	1	NA	NA	NA	-190	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.190000	0.810945	
mm_36002.1	chr4	56741329	56741529	-	1	NA	NA	NA	-4	NM_025271	11471	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Tact1	actin-like 7b	protein-coding	0.005000	0.547264	
mm_145304.1	chr18	53463317	53463517	+	1	NA	NA	NA	-1129	NM_001033281	225518	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	0.040000	0.651741	
mm_32309.1	chr4	103214754	103214954	+	1	NA	NA	NA	30	NM_177732	242585	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.140000	0.721393	
mm_145375.1	chr18	56733993	56734193	+	1	NA	NA	NA	26280	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.010000	0.537313	
mm_35720.1	chr4	44640421	44640621	-	1	NA	NA	NA	-62279	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0.000000	0.487562	
mm_167514.1	chr9	14275853	14276053	-	1	NA	NA	NA	-348	NM_030261	75747	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.045000	0.542289	
mm_165058.1	chr19	41981016	41981216	-	1	NA	NA	NA	20	NM_028152	72199	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	0.070000	0.651741	
mm_141894.1	chr17	34862199	34862399	-	1	NA	NA	NA	215	NM_001142706	14962	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0.015000	0.567164	48(TTGCATAAAAGG,-,0.00)
mm_22355.1	chr2	180954592	180954792	-	1	NA	NA	NA	7	NM_001141933	58237	Mm.40361	NM_021426	ENSMUSG00000027574	Nkain4	AB030182|C030019F02Rik	Na+/K+ transporting ATPase interacting 4	protein-coding	0.060000	0.616915	
mm_140264.1	chr17	84682924	84683124	+	1	NA	NA	NA	-13	NM_031884	27409	Mm.289590	NM_031884	ENSMUSG00000040505	Abcg5	cmp|sterolin-1|trac	ATP-binding cassette, sub-family G (WHITE), member 5	protein-coding	0.025000	0.502488	
mm_117853.1	chr13	98754246	98754446	-	1	NA	NA	NA	-59515	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.005000	0.402985	28(TTTTATATAGAC,+,0.00)
mm_125486.1	chr15	54601534	54601734	+	1	NA	NA	NA	30268	NM_178920	105853	Mm.410994	NM_178920	ENSMUSG00000024479	Mal2	AI461653	mal, T cell differentiation protein 2	protein-coding	0.005000	0.358209	
mm_31325.1	chr4	46450779	46450979	+	1	NA	NA	NA	-47	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.145000	0.786070	
mm_11392.1	chr2	31454360	31454560	+	1	NA	NA	NA	-15810	NM_007494	11898	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.015000	0.656716	-91(GGCCTTAAGAGC,-,0.00),-90(GCCTTAAGAGCC,+,0.00)
mm_50071.1	chr6	41271323	41271523	+	1	NA	NA	NA	-30849	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.000000	0.432836	
mm_135766.1	chr16	56717459	56717659	-	1	NA	NA	NA	-109	NM_019678	21787	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0.100000	0.671642	
mm_80440.1	chr9	77941189	77941389	+	1	NA	NA	NA	23924	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.025000	0.497512	
mm_148858.1	chr19	6399745	6399945	+	1	NA	NA	NA	-738	NM_011242	19395	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.155000	0.835821	
mm_62925.1	chr7	118600081	118600281	+	1	NA	NA	NA	2884	NM_001105252	74424	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	0.030000	0.502488	
mm_122948.1	chr14	54966478	54966678	-	1	NA	NA	NA	29	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.005000	0.562189	-31(GGATATAAAGGG,-,0.00)
mm_155521.1	chrX	74255080	74255280	+	1	NA	NA	NA	493	NM_007927	13726	Mm.18892	NM_007927	ENSMUSG00000001964	Emd	AW550900|Sta	emerin	protein-coding	0.060000	0.606965	
mm_111157.1	chr12	83455841	83456041	-	1	NA	NA	NA	31795	NM_001267626	70127	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0.020000	0.477612	
mm_49838.1	chr6	38109261	38109461	+	1	NA	NA	NA	8	NM_029921	77522	Mm.387207	NM_029921	ENSMUSG00000029829	Tmem213	D630002J15Rik	transmembrane protein 213	protein-coding	0.000000	0.577114	
mm_24296.1	chr3	89302793	89302993	+	1	NA	NA	NA	19986	NM_010108	13638	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0.035000	0.527363	
mm_150392.1	chr19	36409638	36409838	+	1	NA	NA	NA	30671	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.135000	0.810945	
mm_106751.1	chr12	4082547	4082747	+	1	NA	NA	NA	73	NM_153082	217378	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	0.135000	0.736318	
mm_149613.1	chr19	16385834	16386034	+	1	NA	NA	NA	-49733	NM_008137	14675	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.000000	0.343284	
mm_7926.1	chr1	133899101	133899301	-	1	NA	NA	NA	7972	NM_054076	269120	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	0.020000	0.527363	
mm_109469.1	chr12	111417540	111417740	+	1	NA	NA	NA	195	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.015000	0.582090	
mm_105177.1	chr11	101785074	101785274	-	1	NA	NA	NA	136	NM_008815	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.080000	0.696517	
mm_131037.1	chr16	3872316	3872516	+	1	NA	NA	NA	-42	NM_001033159	71063	Mm.379190	NM_001033159	ENSMUSG00000039789	Zfp597	4933407K12Rik|AI462383|AI666357	zinc finger protein 597	protein-coding	0.075000	0.641791	
mm_75985.1	chr8	72322429	72322629	-	1	NA	NA	NA	3467	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.010000	0.527363	-35(GCTTTAAAACTG,+,0.00)
mm_115539.1	chr13	6640699	6640899	-	1	NA	NA	NA	7972	NM_019703	56421	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.010000	0.457711	
mm_146938.1	chr18	32138066	32138266	-	1	NA	NA	NA	39	NM_008934	19123	Mm.2786	NM_008934	ENSMUSG00000024386	Proc	PC	protein C	protein-coding	0.025000	0.537313	
mm_133962.1	chr16	4091818	4092018	-	1	NA	NA	NA	-14108	NM_026508	68015	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0.015000	0.477612	
mm_85988.1	chr9	112187742	112187942	-	1	NA	NA	NA	-76	NM_033264	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.035000	0.502488	
mm_33309.1	chr4	129058043	129058243	+	1	NA	NA	NA	-128	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.155000	0.771144	
mm_6127.1	chr1	64528224	64528424	-	1	NA	NA	NA	-4480	NM_133828	12912	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.000000	0.288557	28(CTCTATTTAGGC,-,0.00)
mm_162583.1	chr1	178871343	178871543	+	1	NA	NA	NA	342318	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.020000	0.472637	-52(GGCCTTTTAAGG,-,0.00),-51(GCCTTTTAAGGG,-,0.00),-50(CCTTTTAAGGGG,+,0.00),-49(CTTTTAAGGGGG,+,0.00)
mm_69041.1	chr7	126800233	126800433	-	1	NA	NA	NA	114	NM_001177308	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.005000	0.487562	
mm_154854.1	chrX	20552232	20552432	+	1	NA	NA	NA	2514	NM_009060	19733	Mm.2118	NM_009060	ENSMUSG00000023070	Rgn	AI265316|GNL|SMP30	regucalcin	protein-coding	0.005000	0.492537	
mm_65689.1	chr7	28372441	28372641	-	1	NA	NA	NA	121	NM_138752	101497	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.090000	0.706468	64(GTTTTAAGAGAC,+,0.00)
mm_51071.1	chr6	66711548	66711748	+	1	NA	NA	NA	5241	NM_134166	171184	Mm.377165	NM_134166	ENSMUSG00000093764	Vmn1r36	V1rc11	vomeronasal 1 receptor 36	protein-coding	0.025000	0.407960	
mm_139647.1	chr17	57386548	57386748	+	1	NA	NA	NA	27962	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.293532	
mm_38880.1	chr4	149698547	149698747	-	1	NA	NA	NA	61	NM_001164050	18707	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol 3-kinase catalytic delta polypeptide	protein-coding	0.070000	0.636816	
mm_154189.1	chr19	58822360	58822560	-	1	NA	NA	NA	-28046	NM_026208	67507	Mm.27027	NM_026208	ENSMUSG00000026931	1700019N19Rik	-	RIKEN cDNA 1700019N19 gene	protein-coding	0.010000	0.582090	
mm_109411.1	chr12	110463808	110464008	+	1	NA	NA	NA	16729	NM_001135001	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.015000	0.517413	
mm_14420.1	chr2	130450282	130450482	+	1	NA	NA	NA	104	NM_001163688	19262	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	0.125000	0.751244	
mm_133854.1	chr16	96273088	96273288	+	1	NA	NA	NA	-7844	NM_033149	93961	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	0.030000	0.482587	
mm_31253.1	chr4	45011665	45011865	+	1	NA	NA	NA	647	NM_001163284	230119	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0.045000	0.557214	
mm_35651.1	chr4	43533200	43533400	-	1	NA	NA	NA	-9746	NM_001277875	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.020000	0.552239	
mm_129788.1	chr15	82813825	82814025	-	1	NA	NA	NA	-19680	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.020000	0.378109	-7(TTTTTTAAAAGC,-,0.00)
mm_23728.1	chr3	69024183	69024383	+	1	NA	NA	NA	14381	NR_029735	723949		NR_029735	ENSMUSG00000065606	Mir16-2	Mirn16-2|mir-16-2	microRNA 16-2	ncRNA	0.010000	0.338308	
mm_16669.1	chr2	6722076	6722276	-	1	NA	NA	NA	-514	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.015000	0.452736	
mm_90041.1	chr10	115817348	115817548	+	1	NA	NA	NA	164	NM_001168679	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	0.030000	0.412935	
mm_59935.1	chr7	30424143	30424343	+	1	NA	NA	NA	939	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.005000	0.557214	
mm_72836.1	chr8	88288952	88289152	+	1	NA	NA	NA	-14	NM_001037723	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.025000	0.587065	
mm_38929.1	chr4	150189140	150189340	-	1	NA	NA	NA	11895	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.010000	0.417910	
mm_129022.1	chr15	74955428	74955628	-	1	NA	NA	NA	422	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.065000	0.686567	
mm_80286.1	chr9	73064050	73064250	+	1	NA	NA	NA	2	NM_001301232	11891	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	0.025000	0.482587	
mm_38568.1	chr4	141723362	141723562	-	1	NA	NA	NA	-43	NM_001017966	68817	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	0.160000	0.805970	
mm_149395.1	chr19	11387728	11387928	+	1	NA	NA	NA	12340	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.015000	0.373134	
mm_154521.1	chrM	13208	13408	-	1	NA	NA	NA	NA	NA									0.010000	0.348259	
mm_173259.1	chrX	94831262	94831462	+	1	NA	NA	NA	-33073	NR_003292	668171	Mm.426134	NR_003292		Zxda	4933406P09Rik|AW413531	zinc finger, X-linked, duplicated A	pseudo	0.015000	0.482587	
mm_3177.1	chr1	135750507	135750707	+	1	NA	NA	NA	-15478	NM_013750	27280	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	0.015000	0.527363	
mm_73921.1	chr8	119809121	119809321	+	1	NA	NA	NA	-30805	NM_028883	74347	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.030000	0.517413	
mm_111404.1	chr12	91063282	91063482	-	1	NA	NA	NA	17534	NR_045858	71349	Mm.442093	NR_045858		5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	0.000000	0.398010	
mm_92825.1	chr10	81461884	81462084	-	1	NA	NA	NA	11147	NM_001311127	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.005000	0.537313	
mm_116279.1	chr13	34963704	34963904	-	1	NA	NA	NA	5	NM_026947	69123	Mm.482475	NM_026947	ENSMUSG00000021416	Eci3	1810022C23Rik|Kseg2	enoyl-Coenzyme A delta isomerase 3	protein-coding	0.040000	0.552239	
mm_47443.1	chr5	123345758	123345958	-	1	NA	NA	NA	1410	NM_029850	77045	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0.025000	0.512438	-34(TCCTATAAAGGA,-,0.00)
mm_9166.1	chr1	170972763	170972963	-	1	NA	NA	NA	3208	NM_001077189	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.010000	0.383085	-35(CCATTTATAAGC,+,0.00),-35(CCATTTATAAGC,-,0.00)
mm_129870.1	chr15	83393866	83394066	-	1	NA	NA	NA	-26669	NR_027980	69291	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0.015000	0.502488	
mm_141073.1	chr17	25844324	25844524	-	1	NA	NA	NA	427	NM_145999	214952	Mm.40907	NM_145999	ENSMUSG00000025733	Rhot2	Arht2|Miro2	ras homolog family member T2	protein-coding	0.085000	0.691542	
mm_67315.1	chr7	79594900	79595100	-	1	NA	NA	NA	22657	NM_019799	56315	Mm.10909	NM_019799	ENSMUSG00000030549	Rhcg	BB065800	Rhesus blood group-associated C glycoprotein	protein-coding	0.020000	0.537313	
mm_10159.1	chr2	4400864	4401064	+	1	NA	NA	NA	-12	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.040000	0.572139	
mm_101123.1	chr11	12028810	12029010	-	1	NA	NA	NA	-939	NM_001177629	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.005000	0.373134	
mm_118293.1	chr13	113046648	113046848	-	1	NA	NA	NA	-360	NM_027127	69590	Mm.12715	NM_027127	ENSMUSG00000021760	Gpx8	2310016C16Rik|AU017063	glutathione peroxidase 8 (putative)	protein-coding	0.020000	0.422886	
mm_60415.1	chr7	44476107	44476307	+	1	NA	NA	NA	5860	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.477612	
mm_148778.1	chr19	6108519	6108719	+	1	NA	NA	NA	2821	NM_001009546	381204	Mm.359041	NM_001009546	ENSMUSG00000054999	Naaladl1	Gm964|Naaladasel	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding	0.030000	0.567164	
mm_102389.1	chr11	58954350	58954550	-	1	NA	NA	NA	62	NR_134309	382522	Mm.377898	NR_134309	ENSMUSG00000080712	Hist3h2bb-ps	4930534G10Rik|4933432H21|B2Hist3h2bb|Hist3h2bb|R75370	histone cluster 3, H2bb, pseudogene	pseudo	0.035000	0.452736	
mm_40759.1	chr5	66968334	66968534	+	1	NA	NA	NA	18	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.030000	0.477612	
mm_96407.1	chr11	67253397	67253597	+	1	NA	NA	NA	15685	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.045000	0.482587	
mm_52884.1	chr6	122513583	122513783	+	1	NA	NA	NA	7	NM_015776	50530	Mm.41931	NM_015776	ENSMUSG00000030116	Mfap5	MAGP-2|MFAP-5	microfibrillar associated protein 5	protein-coding	0.020000	0.477612	
mm_28420.1	chr3	90433459	90433659	-	1	NA	NA	NA	77	NM_145540	229543	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	0.115000	0.676617	
mm_89186.1	chr10	86346054	86346254	+	1	NA	NA	NA	45742	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.010000	0.402985	77(GGGCATTTAAAG,-,0.00),79(GCATTTAAAGCT,+,0.00)
mm_25572.1	chr3	116829435	116829635	+	1	NA	NA	NA	-21369	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.025000	0.417910	
mm_152524.1	chr19	11314352	11314552	-	1	NA	NA	NA	20243	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.005000	0.417910	
mm_21781.1	chr2	164847997	164848197	-	1	NA	NA	NA	9611	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.000000	0.532338	
mm_152633.1	chr19	12501553	12501753	-	1	NA	NA	NA	343	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.145000	0.761194	
mm_46528.1	chr5	105642590	105642790	-	1	NA	NA	NA	-57279	NM_001122768	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.020000	0.477612	
mm_31611.1	chr4	58994215	58994415	+	1	NA	NA	NA	-7237	NM_025968	67103	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	0.005000	0.477612	-37(GAGTATAAATAG,-,0.00)
mm_54131.1	chr6	20970244	20970444	-	1	NA	NA	NA	-245765	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.010000	0.373134	
mm_139960.1	chr17	71616139	71616339	+	1	NA	NA	NA	24	NM_175639	72515	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	0.115000	0.741294	
mm_73266.1	chr8	104347366	104347566	+	1	NA	NA	NA	6872	NM_024217	68119	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.005000	0.437811	-82(GACCCTAAAAGA,-,0.00)
mm_27828.1	chr3	79097217	79097417	-	1	NA	NA	NA	47570	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.437811	-22(CCCCCTAAAAAC,-,0.00)
mm_137331.1	chr17	25086864	25087064	+	1	NA	NA	NA	-5850	NM_001001183	407831	Mm.34379	NM_001001183	ENSMUSG00000024168	Tmem204	-	transmembrane protein 204	protein-coding	0.030000	0.592040	
mm_39910.1	chr5	31297510	31297710	+	1	NA	NA	NA	29	NM_144909	231103	Mm.100043	NM_144909	ENSMUSG00000059434	Gckr	GKRP	glucokinase regulatory protein	protein-coding	0.020000	0.542289	
mm_148970.1	chr19	7537668	7537868	+	1	NA	NA	NA	-19691	NM_139269	225845	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.000000	0.527363	
mm_98833.1	chr11	97435242	97435442	+	1	NA	NA	NA	-14818	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.025000	0.502488	
mm_25505.1	chr3	109560613	109560813	+	1	NA	NA	NA	-13294	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.010000	0.368159	
mm_72118.1	chr8	71678218	71678418	+	1	NA	NA	NA	1935	NM_010589	16453	Mm.249645	NM_010589	ENSMUSG00000031805	Jak3	fae|wil	Janus kinase 3	protein-coding	0.005000	0.562189	
mm_101941.1	chr11	50207777	50207977	-	1	NA	NA	NA	2943	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.025000	0.497512	46(CTACATTAAAGG,-,0.00)
mm_128839.1	chr15	68363114	68363314	-	1	NA	NA	NA	-21925	NR_029718	387228		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0.130000	0.676617	
mm_152336.1	chr19	9978382	9978582	-	1	NA	NA	NA	-2118	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.015000	0.537313	
mm_66212.1	chr7	34357714	34357914	-	1	NA	NA	NA	31726	NM_025948	67070	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral	LSM14A mRNA processing body assembly factor	protein-coding	0.020000	0.542289	
mm_27237.1	chr3	36475597	36475797	-	1	NA	NA	NA	-173	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.060000	0.656716	
mm_105601.1	chr11	106775848	106776048	-	1	NA	NA	NA	3567	NR_027785	50776	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	-	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	0.030000	0.472637	
mm_45621.1	chr5	75967588	75967788	-	1	NA	NA	NA	10740	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.015000	0.452736	
mm_137510.1	chr17	27038527	27038727	+	1	NA	NA	NA	9368	NM_027544	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.025000	0.582090	
mm_81107.1	chr9	106452056	106452256	+	1	NA	NA	NA	-1682	NM_021567	59092	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	0.000000	0.552239	
mm_121045.1	chr14	80022232	80022432	+	1	NA	NA	NA	22030	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding	0.005000	0.417910	
mm_50506.1	chr6	49036515	49036715	+	1	NA	NA	NA	97	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.040000	0.547264	
mm_98101.1	chr11	86683792	86683992	+	1	NA	NA	NA	-70	NM_029478	75909	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0.095000	0.636816	-31(CCTTTAAGGAGC,+,0.00)
mm_3204.1	chr1	135818759	135818959	+	1	NA	NA	NA	261	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding	0.140000	0.766169	
mm_112893.1	chr13	20885137	20885337	+	1	NA	NA	NA	91124	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.378109	
mm_58877.1	chr7	16987107	16987307	+	1	NA	NA	NA	-7381	NM_001101535	434130	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	ENSMUSG00000041117	coiled-coil domain containing 8	protein-coding	0.000000	0.487562	
mm_105838.1	chr11	113683161	113683361	-	1	NA	NA	NA	890	NM_138598	28081	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0.045000	0.611940	
mm_81316.1	chr9	108436389	108436589	+	1	NA	NA	NA	7	NM_001004192	434439	Mm.78372	NM_001004192	ENSMUSG00000050641	BC048562	-	cDNA sequence BC048562	protein-coding	0.000000	0.477612	73(GCTTTAATAGGC,+,0.00)
mm_167200.1	chr7	143069418	143069618	+	1	NA	NA	NA	150	NM_001115085	56844	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.100000	0.666667	
mm_117155.1	chr13	61541796	61541996	-	1	NA	NA	NA	-57	NM_022326	64139	Mm.279933	NM_022326	ENSMUSG00000074871	Ctsm	1600027J17Rik|AI324100|Catm	cathepsin M	protein-coding	0.010000	0.452736	25(ACCTTTATAAAG,-,0.00),27(CTTTATAAAGAG,+,0.00)
mm_113155.1	chr13	24801236	24801436	+	1	NA	NA	NA	-321	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.100000	0.676617	
mm_158252.1	chrX	108664839	108665039	-	1	NA	NA	NA	169416	NM_001081477	382236	Mm.100112	NM_001081477	ENSMUSG00000063663	Brwd3	Brodl|D030064D06Rik|Gm596	bromodomain and WD repeat domain containing 3	protein-coding	0.015000	0.447761	
mm_60530.1	chr7	44480145	44480345	+	1	NA	NA	NA	-4272	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.482587	
mm_116112.1	chr13	28950057	28950257	-	1	NA	NA	NA	3525	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.015000	0.293532	
mm_169095.1	chr13	40886753	40886953	+	1	NA	NA	NA	95	NM_008105	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.020000	0.512438	-5(TCTTTTAGATCC,+,0.00)
mm_33469.1	chr4	130816746	130816946	+	1	NA	NA	NA	24309	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.050000	0.577114	
mm_166818.1	chr7	18009810	18010010	+	1	NA	NA	NA	21	NM_028171	69785	Mm.46086	NM_027210	ENSMUSG00000057195	Ceacam13	1600012K03Rik|1600025J19Rik	carcinoembryonic antigen-related cell adhesion molecule 13	protein-coding	0.000000	0.502488	
mm_14281.1	chr2	128797946	128798146	+	1	NA	NA	NA	-20257	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.010000	0.393035	
mm_142872.1	chr17	51816818	51817018	-	1	NA	NA	NA	-4864	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.005000	0.412935	
mm_138294.1	chr17	34630390	34630590	+	1	NA	NA	NA	804	NM_030890	260297	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31	proline-rich transmembrane protein 1	protein-coding	0.025000	0.542289	
mm_96146.1	chr11	61022495	61022695	+	1	NA	NA	NA	31	NM_001267593	16515	Mm.4970	NM_010603	ENSMUSG00000042529	Kcnj12	IRK-2|IRK2|Kir2.2|MB-IRK2	potassium inwardly-rectifying channel, subfamily J, member 12	protein-coding	0.125000	0.761194	
mm_56106.1	chr6	87496152	87496352	-	1	NA	NA	NA	75	NR_104483	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.020000	0.616915	
mm_148713.1	chr19	5803668	5803868	+	1	NA	NA	NA	-1096	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.085000	0.676617	
mm_7111.1	chr1	89934407	89934607	-	1	NA	NA	NA	-3331	NM_010262	14472	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.030000	0.462687	-42(CCCTCTATAAGT,-,0.00)
mm_40671.1	chr5	65493352	65493552	+	1	NA	NA	NA	-617	NM_133697	68552	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.020000	0.487562	-35(AACCTTAAAAGA,-,0.00)
mm_89350.1	chr10	88146957	88147157	+	1	NA	NA	NA	-14	NM_028334	69736	Mm.222184	NM_027191	ENSMUSG00000035351	Nup37	2410003L22Rik|2810039M17Rik	nucleoporin 37	protein-coding	0.090000	0.676617	
mm_123950.1	chr14	73445011	73445211	-	1	NA	NA	NA	-59840	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.005000	0.497512	
mm_69813.1	chr7	141263807	141264007	-	1	NA	NA	NA	2517	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.030000	0.606965	
mm_165368.1	chr2	127277837	127278037	+	1	NA	NA	NA	7708	NM_139308	99138	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0.000000	0.298507	
mm_19344.1	chr2	90895243	90895443	-	1	NA	NA	NA	9378	NM_026688	68349	Mm.30113	NM_026688	ENSMUSG00000005510	Ndufs3	0610010M09Rik|CI-30kD	NADH dehydrogenase (ubiquinone) Fe-S protein 3	protein-coding	0.010000	0.422886	
mm_162100.1	chrX	37827044	37827244	+	1	NA	NA	NA	89	NM_008955	19202	Mm.10105	NM_008955	ENSMUSG00000006200	Rhox6	AV213605|AW548842|Psx1	reproductive homeobox 6	protein-coding	0.050000	0.552239	
mm_79534.1	chr9	57767340	57767540	+	1	NA	NA	NA	-1580	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.020000	0.502488	
mm_60417.1	chr7	44476173	44476373	+	1	NA	NA	NA	5926	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.452736	
mm_102660.1	chr11	64060116	64060316	-	1	NA	NA	NA	19256	NM_178379	70383	Mm.340211	NM_178379	ENSMUSG00000042148	Cox10	2410004F01Rik|AU042636	cytochrome c oxidase assembly protein 10	protein-coding	0.015000	0.497512	
mm_115098.1	chr13	102733038	102733238	+	1	NA	NA	NA	-27117	NR_130318	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.005000	0.497512	
mm_120762.1	chr14	73368268	73368468	+	1	NA	NA	NA	16903	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.040000	0.497512	
mm_42312.1	chr5	114865373	114865573	+	1	NA	NA	NA	11759	NM_026263	67593	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	0.040000	0.562189	
mm_68632.1	chr7	118187967	118188167	-	1	NA	NA	NA	55570	NM_001031814	233789	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	0.000000	0.353234	
mm_66825.1	chr7	48691696	48691896	-	1	NA	NA	NA	-47995	NM_207537	404238	Mm.377926	NM_207537	ENSMUSG00000070546	Mrgprb3	MrgB3	MAS-related GPR, member B3	protein-coding	0.005000	0.432836	
mm_152642.1	chr19	12527000	12527200	-	1	NA	NA	NA	-25104	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.000000	0.437811	19(TTTTTTAAAGAG,+,0.00)
mm_53354.1	chr6	129350284	129350484	+	1	NA	NA	NA	140	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.005000	0.383085	
mm_33901.1	chr4	136284572	136284772	+	1	NA	NA	NA	-1397	NM_009557	22704	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	0.015000	0.492537	
mm_150001.1	chr19	29284841	29285041	+	1	NA	NA	NA	33138	NM_008413	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.035000	0.482587	
mm_9533.1	chr1	173871330	173871530	-	1	NA	NA	NA	8757	NM_001170853	100040462	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	0.000000	0.447761	
mm_75756.1	chr8	69908821	69909021	-	1	NA	NA	NA	-6363	NM_023312	67184	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.015000	0.542289	
mm_85273.1	chr9	99436564	99436764	-	1	NA	NA	NA	48	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.170000	0.830846	
mm_51206.1	chr6	71325908	71326108	+	1	NA	NA	NA	3196	NM_009858	12526	Mm.333148	NM_009858	ENSMUSG00000053044	Cd8b1	Cd8b|Ly-3|Ly-C|Lyt-3	CD8 antigen, beta chain 1	protein-coding	0.010000	0.487562	
mm_144049.1	chr17	90448610	90448810	-	1	NA	NA	NA	7170	NM_001346958	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.010000	0.422886	
mm_87015.1	chr10	26895158	26895358	+	1	NA	NA	NA	122746	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.010000	0.343284	
mm_10196.1	chr2	4927282	4927482	+	1	NA	NA	NA	8386	NM_010726	16922	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.010000	0.427861	
mm_134529.1	chr16	19241006	19241206	-	1	NA	NA	NA	45635	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.005000	0.338308	
mm_32277.1	chr4	102760235	102760435	+	1	NA	NA	NA	200	NM_001285859	73094	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0.045000	0.592040	
mm_5499.1	chr1	36985729	36985929	-	1	NA	NA	NA	-46302	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.030000	0.482587	
mm_81539.1	chr9	110244857	110245057	+	1	NA	NA	NA	1174	NM_001166273	29873	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding	0.060000	0.587065	
mm_31034.1	chr4	40948426	40948626	+	1	NA	NA	NA	-27	NM_029814	76959	Mm.212763	NM_029814	ENSMUSG00000028419	Chmp5	2210412K09Rik|AW545668	charged multivesicular body protein 5	protein-coding	0.085000	0.592040	
mm_149749.1	chr19	22692260	22692460	+	1	NA	NA	NA	-259	NM_001035245	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.015000	0.368159	-41(GCATTAATACAC,+,0.00)
mm_70856.1	chr8	24044427	24044627	+	1	NA	NA	NA	374866	NM_177086	320158	Mm.121274	NM_177086	ENSMUSG00000037492	Zmat4	9630048M01Rik	zinc finger, matrin type 4	protein-coding	0.000000	0.517413	
mm_101569.1	chr11	34227174	34227374	-	1	NA	NA	NA	-19185	NM_023907	14233	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	0.000000	0.358209	-69(GCACTTAAAAGA,-,0.00)
mm_85859.1	chr9	110746998	110747198	-	1	NA	NA	NA	47	NM_011199	19228	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.015000	0.532338	-38(TCTTTTCAAGCC,+,0.00)
mm_36231.1	chr4	63152523	63152723	-	1	NA	NA	NA	1549	NM_007443	11699	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.040000	0.597015	
mm_4797.1	chr1	185204036	185204236	+	1	NA	NA	NA	-32	NM_001163754	98732	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	0.120000	0.741294	
mm_38411.1	chr4	139092951	139093151	-	1	NA	NA	NA	-81	NM_008675	17965	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	0.155000	0.791045	
mm_115229.1	chr13	109902744	109902944	+	1	NA	NA	NA	-965	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.090000	0.626866	
mm_73940.1	chr8	120101315	120101515	+	1	NA	NA	NA	57	NM_133967	102193	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.105000	0.661692	
mm_51794.1	chr6	88272288	88272488	+	1	NA	NA	NA	50120	NM_019964	56691	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	0.015000	0.517413	
mm_114646.1	chr13	76891389	76891589	+	1	NA	NA	NA	243979	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0.005000	0.412935	
mm_96377.1	chr11	67240829	67241029	+	1	NA	NA	NA	3117	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.030000	0.492537	
mm_57845.1	chr6	129467528	129467728	-	1	NA	NA	NA	5151	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.383085	
mm_148677.1	chr19	5638193	5638393	+	1	NA	NA	NA	803	NM_009045	19697	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.015000	0.557214	
mm_166054.1	chr4	132345640	132345840	-	1	NA	NA	NA	10	NM_001197082	100088	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	0.105000	0.691542	
mm_141362.1	chr17	28899610	28899810	-	1	NA	NA	NA	-5555	NR_045457	74179	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	0.060000	0.606965	
mm_61703.1	chr7	81213252	81213452	+	1	NA	NA	NA	-452	NM_008803	18584	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.155000	0.756219	
mm_42272.1	chr5	114146408	114146608	+	1	NA	NA	NA	15352	NM_011677	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.010000	0.557214	
mm_37344.1	chr4	119658814	119659014	-	1	NA	NA	NA	31	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.015000	0.616915	-36(TGGCCTATAAGG,-,0.00),-34(GCCTATAAGGGG,+,0.00),-34(GCCTATAAGGGG,-,0.00)
mm_109178.1	chr12	108423003	108423203	+	1	NA	NA	NA	287	NM_001043335	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.165000	0.815920	
mm_68512.1	chr7	111593843	111594043	-	1	NA	NA	NA	186034	NM_173739	233733	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	0.015000	0.517413	-13(CTGTTTAAAGGG,-,0.00)
mm_35228.1	chr4	19696622	19696822	-	1	NA	NA	NA	12282	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.000000	0.283582	
mm_128643.1	chr15	59374074	59374274	-	1	NA	NA	NA	-22	NM_153548	223593	Mm.218665	NM_153548	ENSMUSG00000022350	Washc5	AL022848|C76463|E430025E21Rik|Kiaa0196|mKIAA0196|strumpellin	WASH complex subunit 5	protein-coding	0.120000	0.726368	
mm_86866.1	chr10	21993878	21994078	+	1	NA	NA	NA	88	NM_001161850	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.095000	0.601990	
mm_110669.1	chr12	65066592	65066792	-	1	NA	NA	NA	7246	NM_013902	30795	Mm.28480	NM_013902	ENSMUSG00000020949	Fkbp3	25kDa|FKBP-3|FKBP25	FK506 binding protein 3	protein-coding	0.000000	0.358209	
mm_172240.1	chr6	68704906	68705106	-	1	NA	NA	NA	622168	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.407960	
mm_127952.1	chr15	10771280	10771480	-	1	NA	NA	NA	56480	NR_045065	75259	Mm.33928	NR_045063	ENSMUSG00000097058	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	0.015000	0.407960	
mm_94200.1	chr11	3101630	3101830	+	1	NA	NA	NA	-22291	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.045000	0.402985	
mm_70476.1	chr8	12395406	12395606	+	1	NA	NA	NA	-13	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.105000	0.716418	
mm_57419.1	chr6	124911652	124911852	-	1	NA	NA	NA	-47	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.045000	0.636816	
mm_94678.1	chr11	17953403	17953603	+	1	NA	NA	NA	372	NM_026576	68145	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	0.095000	0.711443	
mm_89997.1	chr10	112269845	112270045	+	1	NA	NA	NA	-1178	NM_001025581	268345	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0.015000	0.557214	-7(GCTTAAAGAGTG,+,0.00)
mm_109607.1	chr12	112721739	112721939	+	1	NA	NA	NA	-335	NM_001024602	217882	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0.045000	0.601990	
mm_159381.1	chr3	90243367	90243567	-	1	NA	NA	NA	45	NM_030080	78284	Mm.299952	NM_030080	ENSMUSG00000027938	Creb3l4	1700012K17Rik|5330432F22Rik|AIBZIP|AV040530|AV258827|CREB4|JAL|TISP40|acre1	cAMP responsive element binding protein 3-like 4	protein-coding	0.015000	0.492537	
mm_132944.1	chr16	49894114	49894314	+	1	NA	NA	NA	38560	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.030000	0.452736	
mm_104492.1	chr11	95834074	95834274	-	1	NA	NA	NA	-8121	NM_023121	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.040000	0.636816	
mm_42895.1	chr5	122403280	122403480	+	1	NA	NA	NA	11502	NM_019824	56378	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.030000	0.477612	
mm_8148.1	chr1	136580438	136580638	-	1	NA	NA	NA	-44363	NM_177643	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.020000	0.492537	
mm_80855.1	chr9	98424865	98425065	+	1	NA	NA	NA	2004	NM_011254	19659	Mm.279741	NM_011254	ENSMUSG00000046402	Rbp1	CRBPI|Crbp|Rbp-1	retinol binding protein 1, cellular	protein-coding	0.095000	0.626866	
mm_2827.1	chr1	131153081	131153281	+	1	NA	NA	NA	-26	NM_001136070	16865	Mm.276294	NM_010709	ENSMUSG00000026427	Eif2d	D1Ertd5e|Lgtn	eukaryotic translation initiation factor 2D	protein-coding	0.065000	0.641791	
mm_48659.1	chr5	145879228	145879428	-	1	NA	NA	NA	526	NM_007818	13112	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	0.000000	0.437811	
mm_39451.1	chr5	17574475	17574675	+	1	NA	NA	NA	-241	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.105000	0.756219	
mm_58678.1	chr7	12478246	12478446	+	1	NA	NA	NA	41	NM_026112	67370	Mm.98929	NM_026112	ENSMUSG00000030386	Zfp606	2410022M24Rik|AW494727	zinc finger protein 606	protein-coding	0.105000	0.616915	
mm_92167.1	chr10	67549025	67549225	-	1	NA	NA	NA	-170	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.130000	0.696517	
mm_47543.1	chr5	124327746	124327946	-	1	NA	NA	NA	126	NM_001081323	269702	Mm.60224	NM_001081323	ENSMUSG00000038126	Mphosph9	4930548D04Rik|9630025B04Rik|AW413446|AW547060|B930097C17Rik|C87456|MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding	0.140000	0.681592	
mm_22450.1	chr2	181764610	181764810	-	1	NA	NA	NA	1378	NM_001171615	17932	Mm.458718	NM_008665	ENSMUSG00000010505	Myt1	Nzf2|Nzf2a|Nzf2b|Nztf2	myelin transcription factor 1	protein-coding	0.025000	0.517413	
mm_132135.1	chr16	31897770	31897970	+	1	NA	NA	NA	19060	NM_013900	30060	Mm.30988	NM_013900	ENSMUSG00000022780	Mfi2	CD228|MTf|Meltf	antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5	protein-coding	0.000000	0.532338	
mm_114942.1	chr13	96542452	96542652	+	1	NA	NA	NA	27	NM_012048	27015	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	0.080000	0.661692	-89(GCCTTTAGGCGC,+,0.00)
mm_134281.1	chr16	14203102	14203302	-	1	NA	NA	NA	39927	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.020000	0.567164	
mm_95980.1	chr11	58974515	58974715	+	1	NA	NA	NA	-3478	NM_001290988	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.005000	0.552239	
mm_32718.1	chr4	116221542	116221742	+	1	NA	NA	NA	-272	NM_181585	18710	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55pik	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	protein-coding	0.070000	0.651741	
mm_166166.1	chr5	21186168	21186368	+	1	NA	NA	NA	1	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.065000	0.676617	
mm_133477.1	chr16	89585858	89586058	+	1	NA	NA	NA	-14775	NM_001113406	16693	Mm.310906	NM_001113406	ENSMUSG00000091212	Krtap11-1	AA162070|AA589467|AV018433|Hacl1|KAP11.1|PRED29	keratin associated protein 11-1	protein-coding	0.000000	0.567164	-36(CACTATAAAAGG,-,0.00)
mm_163544.1	chr13	17857152	17857352	+	1	NA	NA	NA	-52155	NM_027118	69562	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.030000	0.482587	
mm_80222.1	chr9	72581288	72581488	+	1	NA	NA	NA	49148	NM_001033536	319758	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	0.005000	0.268657	
mm_163370.1	chr12	38783319	38783519	+	1	NA	NA	NA	-292	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.000000	0.452736	-35(AGCTCTAAAAGA,-,0.00)
mm_25050.1	chr3	98309062	98309262	+	1	NA	NA	NA	28731	NM_008256	15360	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.015000	0.552239	
mm_3873.1	chr1	160989599	160989799	+	1	NA	NA	NA	11093	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.030000	0.532338	
mm_8955.1	chr1	164460744	164460944	-	1	NA	NA	NA	-2489	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.010000	0.467662	
mm_44820.1	chr5	33655074	33655274	-	1	NA	NA	NA	-2600	NM_009193	20492	Mm.4172	NM_009193	ENSMUSG00000004642	Slbp	-	stem-loop binding protein	protein-coding	0.005000	0.417910	
mm_74040.1	chr8	121950507	121950707	+	1	NA	NA	NA	115	NM_001285983	53325	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	0.130000	0.716418	
mm_127138.1	chr15	98168209	98168409	+	1	NA	NA	NA	503	NM_177716	239650	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	0.070000	0.696517	
mm_87192.1	chr10	39451391	39451591	+	1	NA	NA	NA	81692	NM_001122893	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.010000	0.542289	
mm_169422.1	chr14	53173609	53173809	-	1	NA	NA	NA	-678014	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.065000	0.572139	-45(CCTTATATAACA,+,0.00)
mm_135553.1	chr16	49848687	49848887	-	1	NA	NA	NA	-6867	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.005000	0.527363	
mm_56453.1	chr6	97821796	97821996	-	1	NA	NA	NA	14838	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.020000	0.452736	
mm_58951.1	chr7	18718106	18718306	+	1	NA	NA	NA	116	NM_001004152	243862	Mm.389833	NM_001004152	ENSMUSG00000044903	Psg22	AA408604|cea9	pregnancy-specific glycoprotein 22	protein-coding	0.005000	0.532338	
mm_133494.1	chr16	90385858	90386058	+	1	NA	NA	NA	-439	NM_015755	26559	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.085000	0.621891	
mm_72787.1	chr8	86884278	86884478	+	1	NA	NA	NA	880	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.040000	0.383085	-32(GATTTTTAAAGC,-,0.00),-31(ATTTTTAAAGCC,+,0.00)
mm_137090.1	chr17	21503717	21503917	+	1	NA	NA	NA	14829	NM_013843	24132	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	0.010000	0.363184	
mm_161663.1	chr17	8340763	8340963	+	1	NA	NA	NA	124	NM_178774	320111	Mm.442510	NM_178774	ENSMUSG00000055945	Prr18	9630019K15Rik	proline rich 18	protein-coding	0.100000	0.721393	
mm_103082.1	chr11	69900875	69901075	-	1	NA	NA	NA	11	NM_001316696	70419	Mm.272859	NM_027419	ENSMUSG00000018570	2810408A11Rik	1700019L01Rik|4930470J18Rik	RIKEN cDNA 2810408A11 gene	protein-coding	0.035000	0.557214	
mm_155959.1	chrX	105764165	105764365	+	1	NA	NA	NA	-212	NM_030614	80903	Mm.154768	NM_030614	ENSMUSG00000031230	Fgf16	-	fibroblast growth factor 16	protein-coding	0.040000	0.537313	-35(ACGTATATAAAG,-,0.00)
mm_1603.1	chr1	74381548	74381748	+	1	NA	NA	NA	6445	NM_013612	18173	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.010000	0.517413	
mm_89194.1	chr10	86347459	86347659	+	1	NA	NA	NA	47147	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.005000	0.388060	
mm_58349.1	chr6	147263905	147264105	-	1	NA	NA	NA	8	NM_008970	19227	Mm.28440	NM_008970	ENSMUSG00000048776	Pthlh	PLP|PTH-like|Pthrp	parathyroid hormone-like peptide	protein-coding	0.095000	0.671642	
mm_27441.1	chr3	51789027	51789227	-	1	NA	NA	NA	127948	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.030000	0.517413	
mm_96413.1	chr11	67255331	67255531	+	1	NA	NA	NA	17619	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.040000	0.527363	
mm_70424.1	chr8	11476924	11477124	+	1	NA	NA	NA	-905	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.030000	0.502488	
mm_25701.1	chr3	122419680	122419880	+	1	NA	NA	NA	0	NM_013867	29815	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0.055000	0.562189	
mm_33850.1	chr4	135859103	135859303	+	1	NA	NA	NA	3132	NM_010178	14105	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0.005000	0.333333	
mm_16089.1	chr2	168778533	168778733	+	1	NA	NA	NA	-11432	NM_175303	99377	Mm.434054	NM_175303	ENSMUSG00000027547	Sall4	5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20	sal-like 4 (Drosophila)	protein-coding	0.020000	0.457711	
mm_56319.1	chr6	92246298	92246498	-	1	NA	NA	NA	-1748	NM_009426	22044	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	0.010000	0.487562	
mm_93675.1	chr10	117710659	117710859	-	1	NA	NA	NA	-1	NM_001288586	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.145000	0.736318	
mm_13076.1	chr2	91202819	91203019	+	1	NA	NA	NA	7	NM_007387	11432	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.055000	0.587065	
mm_122410.1	chr14	41008264	41008464	-	1	NA	NA	NA	-98	NM_001316740	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.005000	0.572139	
mm_121763.1	chr14	19755463	19755663	-	1	NA	NA	NA	4306	NM_008695	18074	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.020000	0.522388	
mm_8834.1	chr1	162571400	162571600	-	1	NA	NA	NA	672	NM_001347125	53330	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e	vesicle-associated membrane protein 4	protein-coding	0.070000	0.452736	
mm_91849.1	chr10	58675543	58675743	-	1	NA	NA	NA	53	NM_010100	13608	Mm.174523	NM_010100	ENSMUSG00000003227	Edar	ED1R|ED3|ED5|EDA-A1R|EDA3|dl	ectodysplasin-A receptor	protein-coding	0.065000	0.597015	
mm_132134.1	chr16	31897508	31897708	+	1	NA	NA	NA	18798	NM_013900	30060	Mm.30988	NM_013900	ENSMUSG00000022780	Mfi2	CD228|MTf|Meltf	antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5	protein-coding	0.020000	0.641791	
mm_55509.1	chr6	69901027	69901227	-	1	NA	NA	NA	-573953	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.348259	
mm_135426.1	chr16	45382504	45382704	-	1	NA	NA	NA	26449	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.005000	0.378109	
mm_165961.1	chr4	89447252	89447452	+	1	NA	NA	NA	-136320	NM_007670	12579	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)	protein-coding	0.010000	0.437811	
mm_78777.1	chr9	43794050	43794250	+	1	NA	NA	NA	49574	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	0.015000	0.532338	
mm_35160.1	chr4	12865371	12865571	-	1	NA	NA	NA	-41366	NM_173746	208820	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding	0.010000	0.402985	
mm_84808.1	chr9	77347675	77347875	-	1	NA	NA	NA	95	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.015000	0.452736	
mm_22136.1	chr2	170470616	170470816	-	1	NA	NA	NA	-25712	NM_001013369	109054	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	0.010000	0.512438	
mm_49181.1	chr6	15184547	15184747	+	1	NA	NA	NA	-859	NM_212435	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.005000	0.457711	
mm_30959.1	chr4	33923927	33924127	+	1	NA	NA	NA	-605	NM_007726	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding	0.150000	0.810945	
mm_88977.1	chr10	81525307	81525507	+	1	NA	NA	NA	-1182	NM_010304	14676	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.010000	0.636816	
mm_14999.1	chr2	152427569	152427769	+	1	NA	NA	NA	12082	NR_110368	228778	Mm.70959	NM_177656	ENSMUSG00000032680	6820408C15Rik	-	RIKEN cDNA 6820408C15 gene	protein-coding	0.035000	0.552239	
mm_59578.1	chr7	28129004	28129204	+	1	NA	NA	NA	-362	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.020000	0.512438	
mm_9628.1	chr1	176813826	176814026	-	1	NA	NA	NA	-734	NM_029756	76816	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	0.140000	0.746269	
mm_55735.1	chr6	77394330	77394530	-	1	NA	NA	NA	-11955	NR_045141	70753	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	0.005000	0.422886	
mm_27809.1	chr3	78594252	78594452	-	1	NA	NA	NA	550535	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.030000	0.373134	
mm_34113.1	chr4	139197638	139197838	+	1	NA	NA	NA	3627	NM_001271405	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.015000	0.492537	
mm_87421.1	chr10	50727092	50727292	+	1	NA	NA	NA	134523	NM_198007	77987	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.010000	0.407960	50(CCTTTTAAGTTG,+,0.00)
mm_29984.1	chr3	135423381	135423581	-	1	NA	NA	NA	-48	NM_025902	67006	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0.185000	0.791045	
mm_148275.1	chr18	81927553	81927753	-	1	NA	NA	NA	64427	NR_039589	100628596		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.045000	0.542289	
mm_114581.1	chr13	75707397	75707597	+	1	NA	NA	NA	13	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.085000	0.676617	
mm_23114.1	chr3	37639579	37639779	+	1	NA	NA	NA	-268	NM_001305441	24063	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty homolog 1 (Drosophila)	protein-coding	0.030000	0.487562	-22(CTCTTTTTAAAC,-,0.00),-20(CTTTTTAAACTC,+,0.00)
mm_67900.1	chr7	99626819	99627019	-	1	NA	NA	NA	184	NM_001195529	100503386	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	0.100000	0.751244	
mm_139368.1	chr17	51479592	51479792	+	1	NA	NA	NA	-31423	NR_046166	328837	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	0.010000	0.402985	
mm_84024.1	chr9	57683554	57683754	-	1	NA	NA	NA	1	NM_009993	13077	Mm.15537	NM_009993	ENSMUSG00000032310	Cyp1a2	CP12|Cyp1a1|P450-3	cytochrome P450, family 1, subfamily a, polypeptide 2	protein-coding	0.020000	0.542289	-33(TGTTATAAAAGG,-,0.00)
mm_15703.1	chr2	163995090	163995290	+	1	NA	NA	NA	-7	NM_018753	54401	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	0.125000	0.736318	
mm_16911.1	chr2	13493554	13493754	-	1	NA	NA	NA	-1778	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.010000	0.472637	
mm_144433.1	chr18	21001931	21002131	+	1	NA	NA	NA	74	NM_207623	56515	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	0.085000	0.676617	
mm_128247.1	chr15	36609420	36609620	-	1	NA	NA	NA	-547	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.125000	0.721393	
mm_59747.1	chr7	28818693	28818893	+	1	NA	NA	NA	-6545	NM_016772	51798	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.035000	0.626866	
mm_155421.1	chrX	73491885	73492085	+	1	NA	NA	NA	8384	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.010000	0.562189	
mm_166758.1	chr6	128526754	128526954	+	1	NA	NA	NA	-134	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.005000	0.318408	
mm_160322.1	chr7	144861216	144861416	+	1	NA	NA	NA	-70	NM_010202	14175	Mm.4956	NM_010202	ENSMUSG00000050917	Fgf4	Fgf-4|Fgfk|HBGF-4|Hst1|Hstf-1|KS3|hst|hst-1|kFGF	fibroblast growth factor 4	protein-coding	0.115000	0.746269	37(GGCTATATATAC,-,0.00)
mm_108007.1	chr12	73584575	73584775	+	1	NA	NA	NA	-121	NM_001313977	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.115000	0.746269	
mm_156689.1	chrX	159414546	159414746	+	1	NA	NA	NA	74	NM_001313751	78283	Mm.160079	NM_001081124	ENSMUSG00000041020	Map7d2	1600028E09Rik|2900002G04Rik|5330432J06Rik|C030036K04Rik|Mtap7d2	MAP7 domain containing 2	protein-coding	0.180000	0.810945	
mm_3687.1	chr1	153749410	153749610	+	1	NA	NA	NA	84	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.035000	0.492537	
mm_150095.1	chr19	29457775	29457975	+	1	NA	NA	NA	46956	NM_021396	58205	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.000000	0.273632	
mm_68385.1	chr7	109438946	109439146	-	1	NA	NA	NA	7	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	0.095000	0.666667	
mm_70405.1	chr8	11336119	11336319	+	1	NA	NA	NA	-23393	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.010000	0.412935	
mm_30853.1	chr4	28353608	28353808	+	1	NA	NA	NA	-459423	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.000000	0.393035	
mm_99832.1	chr11	108941469	108941669	+	1	NA	NA	NA	21220	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.010000	0.422886	
mm_13161.1	chr2	92599983	92600183	+	1	NA	NA	NA	376	NM_023850	76969	Mm.38021	NM_023850	ENSMUSG00000027221	Chst1	2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KSGAL6ST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding	0.105000	0.761194	
mm_168359.1	chr1	114809302	114809502	-	1	NA	NA	NA	-875735	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.035000	0.522388	
mm_128455.1	chr15	50774546	50774746	-	1	NA	NA	NA	114403	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.005000	0.402985	36(AGCTTTAAAAGA,-,0.00),37(GCTTTAAAAGAA,+,0.00)
mm_26016.1	chr3	135438049	135438249	+	1	NA	NA	NA	516	NR_030689	319587	Mm.358971	NR_030689	ENSMUSG00000097032	4930539J05Rik	8030475D13Rik	RIKEN cDNA 4930539J05 gene	ncRNA	0.110000	0.701493	
mm_147734.1	chr18	61036119	61036319	-	1	NA	NA	NA	-20	NM_009880	12590	Mm.144448	NM_009880	ENSMUSG00000024619	Cdx1	Cdx|Cdx-1	caudal type homeobox 1	protein-coding	0.150000	0.791045	-34(GGCTATAAAAGG,-,0.00)
mm_107587.1	chr12	47812783	47812983	+	1	NA	NA	NA	488579	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0.045000	0.393035	
mm_3355.1	chr1	138166676	138166876	+	1	NA	NA	NA	8350	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.363184	
mm_112259.1	chr12	113896907	113897107	-	1	NA	NA	NA	353099	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.005000	0.427861	
mm_118525.1	chr14	14748215	14748415	+	1	NA	NA	NA	45290	NM_001033270	218756	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.000000	0.278607	
mm_60977.1	chr7	48958968	48959168	+	1	NA	NA	NA	-5	NM_001111016	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.065000	0.641791	
mm_160106.1	chr7	23658450	23658650	+	1	NA	NA	NA	234	NM_030735	81010	Mm.379267	NM_030735	ENSMUSG00000035523	Vmn1r172	V1rd9|V3R9	vomeronasal 1 receptor 172	protein-coding	0.005000	0.333333	
mm_55168.1	chr6	51915780	51915980	-	1	NA	NA	NA	96669	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.000000	0.293532	
mm_58593.1	chr7	5020321	5020521	+	1	NA	NA	NA	45	NM_001033383	319748	Mm.86607	NM_001033383	ENSMUSG00000074405	Zfp865	6430526N21Rik|Znf865	zinc finger protein 865	protein-coding	0.100000	0.666667	
mm_15666.1	chr2	163323314	163323514	+	1	NA	NA	NA	74559	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	0.000000	0.427861	
mm_71306.1	chr8	41374760	41374960	+	1	NA	NA	NA	-163	NM_019734	11886	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	0.095000	0.686567	
mm_146455.1	chr18	86395180	86395380	+	1	NA	NA	NA	328	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.075000	0.646766	
mm_68091.1	chr7	101921078	101921278	-	1	NA	NA	NA	-404	NM_001162974	69358	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0.015000	0.457711	
mm_38609.1	chr4	141871000	141871200	-	1	NA	NA	NA	3820	NM_025994	27984	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	0.015000	0.582090	
mm_147633.1	chr18	58210667	58210867	-	1	NA	NA	NA	-841	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.030000	0.616915	
mm_8421.1	chr1	152386546	152386746	-	1	NA	NA	NA	36	NM_025677	66637	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	0.125000	0.706468	
mm_168520.1	chr11	58214886	58215086	+	1	NA	NA	NA	9	NM_019440	54396	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	0.025000	0.572139	
mm_26867.1	chr3	16183565	16183765	-	1	NA	NA	NA	482	NM_001145919	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.165000	0.810945	
mm_75626.1	chr8	64692352	64692552	-	1	NA	NA	NA	657	NM_013494	12876	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|R74677|fat	carboxypeptidase E	protein-coding	0.040000	0.487562	
mm_87822.1	chr10	60347187	60347387	+	1	NA	NA	NA	436	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.025000	0.587065	
mm_124142.1	chr14	87141081	87141281	-	1	NA	NA	NA	-67	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding	0.110000	0.676617	
mm_99721.1	chr11	106300221	106300421	+	1	NA	NA	NA	1575	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.025000	0.542289	
mm_163038.1	chr11	53350828	53351028	+	1	NA	NA	NA	161	NM_033565	93736	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.135000	0.796020	
mm_48602.1	chr5	144243900	144244100	-	1	NA	NA	NA	-437	NM_001163709	55950	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.005000	0.417910	
mm_171824.1	chr5	142903766	142903966	-	1	NA	NA	NA	2888	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.040000	0.552239	
mm_139792.1	chr17	65886374	65886574	+	1	NA	NA	NA	-719	NM_009067	19765	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.010000	0.447761	
mm_146893.1	chr18	27129861	27130061	-	1	NA	NA	NA	-1375978	NM_001174074	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.015000	0.447761	
mm_124733.1	chr15	6580789	6580989	+	1	NA	NA	NA	1042	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.030000	0.562189	
mm_115525.1	chr13	5864210	5864410	-	1	NA	NA	NA	2821	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.005000	0.507463	
mm_32099.1	chr4	98546803	98547003	+	1	NA	NA	NA	269	NM_001005787	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.015000	0.517413	-63(GCCCTTTAAAAG,-,0.00),-62(CCCTTTAAAAGA,-,0.00),-61(CCTTTAAAAGAA,+,0.00)
mm_41136.1	chr5	87811252	87811452	+	1	NA	NA	NA	3231	NM_009973	12992	Mm.153308	NM_009973	ENSMUSG00000061388	Csn1s2b	AW987150|Csnd|Csne	casein alpha s2-like B	protein-coding	0.005000	0.402985	
mm_66554.1	chr7	45233635	45233835	-	1	NA	NA	NA	5104	NM_007645	12493	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0.005000	0.582090	
mm_106526.1	chr11	120572732	120572932	-	1	NA	NA	NA	104	NM_011032	18453	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.115000	0.716418	-74(GGATTTATAAAG,-,0.00)
mm_91890.1	chr10	59951423	59951623	-	1	NA	NA	NA	247	NM_029083	74747	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.105000	0.631841	
mm_49315.1	chr6	18369171	18369371	+	1	NA	NA	NA	145554	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding	0.005000	0.363184	
mm_144472.1	chr18	23880354	23880554	+	1	NA	NA	NA	-74234	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.000000	0.373134	
mm_171161.1	chr3	24332952	24333152	+	1	NA	NA	NA	450954	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.050000	0.522388	
mm_92178.1	chr10	67901167	67901367	-	1	NA	NA	NA	11395	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0.010000	0.532338	
mm_136785.1	chr17	10703105	10703305	+	1	NA	NA	NA	136986	NM_027032	69310	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.025000	0.497512	
mm_117509.1	chr13	78200461	78200661	-	1	NA	NA	NA	-1688	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.015000	0.552239	75(CTCCATATAAGG,-,0.00),77(CCATATAAGGCA,+,0.00)
mm_54174.1	chr6	23655035	23655235	-	1	NA	NA	NA	1	NM_027754	71300	Mm.443309	NM_027754	ENSMUSG00000078179	Rnf148	4933432M07Rik|Greul3	ring finger protein 148	protein-coding	0.010000	0.348259	
mm_11241.1	chr2	29889130	29889330	+	1	NA	NA	NA	-490	NM_001177661	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.065000	0.601990	
mm_65903.1	chr7	30192848	30193048	-	1	NA	NA	NA	2100	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.050000	0.631841	
mm_15758.1	chr2	164277076	164277276	+	1	NA	NA	NA	1131	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.020000	0.417910	
mm_172864.1	chr9	40803643	40803843	+	1	NA	NA	NA	2470	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.020000	0.427861	-13(CTTTTTATAGCT,+,0.00)
mm_8060.1	chr1	135375157	135375357	-	1	NA	NA	NA	-194	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.025000	0.616915	
mm_95091.1	chr11	33940130	33940330	+	1	NA	NA	NA	-22783	NM_031169	16533	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	0.015000	0.512438	
mm_9824.1	chr1	182517284	182517484	-	1	NA	NA	NA	99	NM_009794	12334	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.130000	0.726368	
mm_133508.1	chr16	90738206	90738406	+	1	NA	NA	NA	-18	NM_029844	77037	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.035000	0.577114	
mm_50592.1	chr6	49068394	49068594	+	1	NA	NA	NA	-5301	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.010000	0.452736	
mm_165772.1	chr3	126997907	126998107	-	1	NA	NA	NA	445	NM_178655	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.030000	0.517413	
mm_5368.1	chr1	28895463	28895663	-	1	NA	NA	NA	-115311	NM_001013750	210962	Mm.214178	NM_001013750	ENSMUSG00000048411	Gm597	-	predicted gene 597	protein-coding	0.000000	0.318408	
mm_16978.1	chr2	18028550	18028750	-	1	NA	NA	NA	1401	NR_028378	100034739	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	0.055000	0.651741	
mm_102823.1	chr11	69059334	69059534	-	1	NA	NA	NA	-341	NM_028005	71923	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.090000	0.601990	-95(GGGTCTTAAAAG,-,0.00),-94(GGTCTTAAAAGA,-,0.00)
mm_37955.1	chr4	133339074	133339274	-	1	NA	NA	NA	141	NM_199306	230796	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	0.100000	0.746269	
mm_169478.1	chr14	69609069	69609269	+	1	NA	NA	NA	-307	NM_033325	94352	Mm.116714	NM_033325	ENSMUSG00000034205	Loxl2	1110004B06Rik|4930526G11Rik|9430067E15Rik	lysyl oxidase-like 2	protein-coding	0.090000	0.681592	-35(CTCTATAAAAGC,-,0.00)
mm_96996.1	chr11	70702191	70702391	+	1	NA	NA	NA	1743	NM_153103	16562	Mm.99996	NM_153103	ENSMUSG00000020821	Kif1c	B430105J22Rik|D11Bwg1349e|Ltxs1|Orch3	kinesin family member 1C	protein-coding	0.005000	0.467662	
mm_154880.1	chrX	20696452	20696652	+	1	NA	NA	NA	-7357	NM_145628	236733	Mm.34489	NM_145628	ENSMUSG00000031066	Usp11	6230415D12Rik|mKIAA4085	ubiquitin specific peptidase 11	protein-coding	0.015000	0.542289	
mm_31957.1	chr4	86857362	86857562	+	1	NA	NA	NA	-95	NM_009096	20104	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	0.075000	0.552239	
mm_146472.1	chr18	88971921	88972121	+	1	NA	NA	NA	-9	NR_105777	102466633		NR_105777	ENSMUSG00000098676	Mir6359	Gm27328|mmu-mir-6359	microRNA 6359	ncRNA	0.075000	0.537313	
mm_153209.1	chr19	34716753	34716953	-	1	NA	NA	NA	30258	NM_172838	240638	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0.015000	0.492537	-34(CTTTTTAAAAAC,+,0.00)
mm_105516.1	chr11	106271932	106272132	-	1	NA	NA	NA	940	NM_001130187	83796	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	0.020000	0.467662	
mm_156127.1	chrX	117709312	117709512	+	1	NA	NA	NA	694655	NM_001102665	100039319	Mm.469831	NM_001102665	ENSMUSG00000067441	Gm14920	ENSMUSG00000067441|Gm1539|H2A.Bbd1|H2A.Lap1|OTTMUSG00000018481	predicted pseudogene 14920	protein-coding	0.010000	0.472637	
mm_109273.1	chr12	109545849	109546049	+	1	NA	NA	NA	551	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.020000	0.492537	
mm_110165.1	chr12	27160410	27160610	-	1	NA	NA	NA	6	NR_045868	636791	Mm.423496	NM_001039248	ENSMUSG00000094002	Gm9866	EG636791|ENSMUSG00000052076	predicted gene 9866	ncRNA	0.030000	0.537313	
mm_143606.1	chr17	78418006	78418206	-	1	NA	NA	NA	46	NM_001285949	225020	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.090000	0.691542	
mm_158374.1	chrX	135210526	135210726	-	1	NA	NA	NA	61	NM_025355	66104	Mm.336239	NM_025355	ENSMUSG00000031409	Tceal6	1500026B10Rik	transcription elongation factor A (SII)-like 6	protein-coding	0.045000	0.616915	
mm_69278.1	chr7	127993078	127993278	-	1	NA	NA	NA	689	NM_023258	66824	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	0.005000	0.527363	
mm_169477.1	chr14	69390794	69390994	+	1	NA	NA	NA	53743	NM_026174	67464	Mm.489765	NM_026174	ENSMUSG00000095463	Entpd4	1200014F22Rik|4930513O14Rik|A430102M06Rik|AI414893|Lysal1|mKIAA0392	ectonucleoside triphosphate diphosphohydrolase 4	protein-coding	0.090000	0.681592	-35(CTCTATAAAAGC,-,0.00)
mm_114890.1	chr13	94358977	94359177	+	1	NA	NA	NA	117	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.115000	0.701493	
mm_37466.1	chr4	123512028	123512228	-	1	NA	NA	NA	-100217	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.025000	0.477612	
mm_132769.1	chr16	44765735	44765935	+	1	NA	NA	NA	99	NM_021325	57781	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.045000	0.562189	
mm_17815.1	chr2	33718694	33718894	-	1	NA	NA	NA	77601	NR_046275	100504399	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	0.015000	0.517413	
mm_146149.1	chr18	74792322	74792522	+	1	NA	NA	NA	13210	NM_177470	52538	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	0.030000	0.527363	
mm_69967.1	chr7	142376626	142376826	-	1	NA	NA	NA	-2980	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.035000	0.572139	
mm_17653.1	chr2	32058562	32058762	-	1	NA	NA	NA	7716	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	0.010000	0.388060	-2(TGGTTTTAAAGA,-,0.00)
mm_143519.1	chr17	73399175	73399375	-	1	NA	NA	NA	21	NM_001033444	381122	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0.005000	0.517413	-54(ACCTATATAAGG,-,0.00)
mm_164712.1	chr17	54298356	54298556	-	1	NA	NA	NA	578	NM_022025	63993	Mm.155241	NM_022025	ENSMUSG00000023945	Slc5a7	CHT1	solute carrier family 5 (choline transporter), member 7	protein-coding	0.045000	0.631841	
mm_62707.1	chr7	110628440	110628640	+	1	NA	NA	NA	871	NM_009627	11535	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.030000	0.522388	
mm_104049.1	chr11	86358070	86358270	-	1	NA	NA	NA	-645	NM_001080931	327987	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0.075000	0.626866	
mm_36199.1	chr4	62359031	62359231	-	1	NA	NA	NA	1417	NM_001045528	338355	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.000000	0.383085	
mm_26193.1	chr3	138488797	138488997	+	1	NA	NA	NA	485	NM_175224	75624	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	0.065000	0.552239	
mm_30956.1	chr4	33342438	33342638	+	1	NA	NA	NA	32227	NM_001305273	24018	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.010000	0.407960	
mm_136794.1	chr17	12119067	12119267	+	1	NA	NA	NA	-117	NM_026644	68262	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.040000	0.542289	29(AGCTTTAAAAGG,-,0.00),30(GCTTTAAAAGGA,+,0.00)
mm_72259.1	chr8	75096972	75097172	+	1	NA	NA	NA	3454	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.030000	0.601990	
mm_10750.1	chr2	23187698	23187898	+	1	NA	NA	NA	-19678	NM_027635	70981	Mm.314026	NM_027635	ENSMUSG00000026774	4931423N10Rik	-	RIKEN cDNA 4931423N10 gene	protein-coding	0.000000	0.313433	
mm_104704.1	chr11	97998101	97998301	-	1	NA	NA	NA	-2028	NM_207231	217151	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.015000	0.527363	
mm_83963.1	chr9	57148210	57148410	-	1	NA	NA	NA	-1276	NM_028347	72774	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0.060000	0.577114	
mm_139815.1	chr17	66714380	66714580	+	1	NA	NA	NA	-119858	NM_028998	74556	Mm.218634	NM_028998	ENSMUSG00000024105	Themis3	9130404H23Rik	thymocyte selection associated family member 3	protein-coding	0.005000	0.487562	
mm_51976.1	chr6	91758849	91759049	+	1	NA	NA	NA	48444	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.015000	0.338308	
mm_95782.1	chr11	54909815	54910015	+	1	NA	NA	NA	7061	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.015000	0.477612	
mm_71520.1	chr8	46846687	46846887	+	1	NA	NA	NA	107042	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.020000	0.597015	
mm_144432.1	chr18	21001845	21002045	+	1	NA	NA	NA	-12	NM_001303011	56515	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	0.100000	0.731343	
mm_128852.1	chr15	71954275	71954475	-	1	NA	NA	NA	79852	NM_027174	69700	Mm.322500	NM_027174	ENSMUSG00000079022	Col22a1	2310067L16Rik|C80743	collagen, type XXII, alpha 1	protein-coding	0.015000	0.532338	
mm_171465.1	chr4	145730208	145730408	-	1	NA	NA	NA	-51235	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.060000	0.532338	
mm_125015.1	chr15	25626127	25626327	+	1	NA	NA	NA	3677	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.020000	0.422886	
mm_88123.1	chr10	69219351	69219551	+	1	NA	NA	NA	6257	NM_001252638	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.005000	0.472637	
mm_20008.1	chr2	119175057	119175257	-	1	NA	NA	NA	648	NM_001039223	623781	Mm.389344	NM_001039223	ENSMUSG00000055926	Gm14137	OTTMUSG00000015762	predicted gene 14137	protein-coding	0.045000	0.651741	
mm_83989.1	chr9	57434872	57435072	-	1	NA	NA	NA	5142	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.035000	0.597015	
mm_42168.1	chr5	112261526	112261726	+	1	NA	NA	NA	5806	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.020000	0.477612	
mm_162016.1	chr19	45009125	45009325	+	1	NA	NA	NA	2667	NM_153796	226153	Mm.105585	NM_153796	ENSMUSG00000025209	Twnk	D19Ertd626e|PEO|Peo1|Twinl	twinkle mtDNA helicase	protein-coding	0.015000	0.517413	45(CCCCCTATAGGG,-,0.00),47(CCCTATAGGGCC,+,0.00)
mm_129077.1	chr15	75812817	75813017	-	1	NA	NA	NA	28991	NM_172121	223642	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0.005000	0.482587	
mm_13594.1	chr2	112507025	112507225	+	1	NA	NA	NA	14161	NM_028844	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.020000	0.427861	
mm_65490.1	chr7	25687455	25687655	-	1	NA	NA	NA	553	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.050000	0.631841	-65(TCTTAAATAGGG,+,0.00)
mm_153502.1	chr19	41333854	41334054	-	1	NA	NA	NA	51116	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.005000	0.537313	
mm_13135.1	chr2	91929574	91929774	+	1	NA	NA	NA	2028	NM_001291481	17242	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.010000	0.492537	
mm_157901.1	chrX	77847950	77848150	-	1	NA	NA	NA	5450	NM_017471	54192	Mm.8034	NM_017471	ENSMUSG00000000003	Pbsn	PB|Prbs	probasin	protein-coding	0.010000	0.363184	
mm_25350.1	chr3	106788704	106788904	+	1	NA	NA	NA	1345	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.005000	0.363184	
mm_141646.1	chr17	33639813	33640013	-	1	NA	NA	NA	1818	NR_028279	378460	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	0.015000	0.552239	-33(GCCTATAAAGTG,+,0.00)
mm_150900.1	chr19	45560507	45560707	+	1	NA	NA	NA	-8	NM_172639	226162	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	5330431N19Rik|Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.065000	0.567164	
mm_113809.1	chr13	46502802	46503002	+	1	NA	NA	NA	999	NM_026056	67252	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding	0.025000	0.462687	
mm_69004.1	chr7	126701057	126701257	-	1	NA	NA	NA	3063	NM_001301374	12721	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.010000	0.547264	
mm_15451.1	chr2	157403026	157403226	+	1	NA	NA	NA	-21167	NM_009271	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.025000	0.467662	
mm_27749.1	chr3	69316354	69316554	-	1	NA	NA	NA	-464	NM_178726	242083	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	0.060000	0.592040	
mm_151535.1	chr19	58943322	58943522	+	1	NA	NA	NA	-3	NM_178689	226265	Mm.103154	NM_178689	ENSMUSG00000048029	Eno4	6430537H07Rik	enolase 4	protein-coding	0.070000	0.611940	
mm_118939.1	chr14	27237932	27238132	+	1	NA	NA	NA	22	NM_027871	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.020000	0.592040	
mm_58536.1	chr7	4465252	4465452	+	1	NA	NA	NA	503	NM_001290416	67425	Mm.360392	NM_026146	ENSMUSG00000006154	Eps8l1	2310051G19Rik|4632407K17Rik|AW060268|DRC3|EPS8R1	EPS8-like 1	protein-coding	0.005000	0.552239	
mm_57089.1	chr6	122586970	122587170	-	1	NA	NA	NA	15374	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.010000	0.497512	
mm_85171.1	chr9	96478539	96478739	-	1	NA	NA	NA	36	NM_011279	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.155000	0.726368	
mm_152011.1	chr19	5955507	5955707	-	1	NA	NA	NA	8599	NM_001164057	18969	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0.025000	0.407960	
mm_117707.1	chr13	95059007	95059207	-	1	NA	NA	NA	82763	NM_172590	218460	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.015000	0.497512	
mm_65969.1	chr7	30436974	30437174	-	1	NA	NA	NA	8508	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.030000	0.552239	
mm_49108.1	chr6	8259320	8259520	+	1	NA	NA	NA	132	NM_001302353	100036521	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039|OTTMUSG00000029336	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0.095000	0.681592	
mm_17583.1	chr2	30415492	30415692	-	1	NA	NA	NA	156	NM_007760	12908	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.115000	0.756219	
mm_113.1	chr1	9759008	9759208	+	1	NA	NA	NA	-10726	NM_173443	70675	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	0.010000	0.298507	
mm_138031.1	chr17	33919471	33919671	+	1	NA	NA	NA	93	NM_009318	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.040000	0.582090	
mm_61529.1	chr7	78920052	78920252	+	1	NA	NA	NA	5917	NM_001113527	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.025000	0.562189	
mm_26759.1	chr3	8666905	8667105	-	1	NA	NA	NA	33	NM_010423	15213	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.075000	0.671642	
mm_166644.1	chr6	84019300	84019500	+	1	NA	NA	NA	14	NM_021469	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.055000	0.606965	
mm_144212.1	chr18	9727975	9728175	+	1	NA	NA	NA	20427	NM_130449	140792	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.000000	0.338308	
mm_78046.1	chr9	14501889	14502089	+	1	NA	NA	NA	1370	NM_023153	66070	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	0.005000	0.427861	
mm_26209.1	chr3	138742175	138742375	+	1	NA	NA	NA	67	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.190000	0.825871	
mm_105144.1	chr11	101459993	101460193	-	1	NA	NA	NA	6106	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.025000	0.636816	
mm_146416.1	chr18	84386025	84386225	+	1	NA	NA	NA	203379	NM_001033341	240476	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.020000	0.502488	
mm_42974.1	chr5	123142158	123142358	+	1	NA	NA	NA	65	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.090000	0.726368	
mm_15498.1	chr2	157832209	157832409	+	1	NA	NA	NA	-82344	NM_198627	277432	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0.005000	0.502488	
mm_102876.1	chr11	69409458	69409658	-	1	NA	NA	NA	4117	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.065000	0.686567	
mm_168353.1	chr1	113904116	113904316	-	1	NA	NA	NA	-1780921	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.035000	0.477612	
mm_46916.1	chr5	114443913	114444113	-	1	NA	NA	NA	14	NM_029956	77697	Mm.105182	NM_029956	ENSMUSG00000029575	Mmab	9130222L19Rik|ATR	methylmalonic aciduria (cobalamin deficiency) cblB type homolog (human)	protein-coding	0.100000	0.686567	
mm_95064.1	chr11	32533196	32533396	+	1	NA	NA	NA	30	NM_009288	20868	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.155000	0.800995	
mm_112983.1	chr13	21356801	21357001	+	1	NA	NA	NA	-5919	NM_016684	22758	Mm.24124	NM_016684	ENSMUSG00000036721	Zscan12	2510038J07Rik|FPM315|Zfp96|mKIAA0426|zfp-96	zinc finger and SCAN domain containing 12	protein-coding	0.005000	0.412935	
mm_129693.1	chr15	81528560	81528760	-	1	NA	NA	NA	-57554	NM_177821	328572	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.010000	0.547264	-34(CACTATAAAAGG,-,0.00)
mm_8378.1	chr1	151250648	151250848	-	1	NA	NA	NA	-93750	NM_001039512	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.030000	0.457711	
mm_87147.1	chr10	34787656	34787856	+	1	NA	NA	NA	304356	NM_010237	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.005000	0.293532	
mm_84341.1	chr9	64184192	64184392	-	1	NA	NA	NA	4995	NM_183316	330959	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	0.000000	0.472637	
mm_41701.1	chr5	100861919	100862119	+	1	NA	NA	NA	15790	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|Gpat3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding	0.005000	0.562189	
mm_101375.1	chr11	23770823	23771023	-	1	NA	NA	NA	47	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.085000	0.701493	
mm_158440.1	chrX	140384605	140384805	-	1	NA	NA	NA	17211	NM_177750	245643	Mm.208683	NM_177750	ENSMUSG00000042425	Frmpd3	B930041G04|EG245643|Gm29750	FERM and PDZ domain containing 3	protein-coding	0.010000	0.492537	5(TGCTTTTTAAGA,-,0.00)
mm_120098.1	chr14	58036586	58036786	+	1	NA	NA	NA	-36000	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.010000	0.527363	
mm_52733.1	chr6	120394533	120394733	+	1	NA	NA	NA	-30264	NR_045558	67200	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	0.005000	0.422886	
mm_152113.1	chr19	6969677	6969877	-	1	NA	NA	NA	37	NM_008874	18797	Mm.273204	NM_008874	ENSMUSG00000024960	Plcb3	mKIAA4098	phospholipase C, beta 3	protein-coding	0.155000	0.805970	
mm_17856.1	chr2	34790244	34790444	-	1	NA	NA	NA	9568	NM_145522	227746	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.005000	0.502488	-18(GCTTTAAGACCC,+,0.00)
mm_58215.1	chr6	144204088	144204288	-	1	NA	NA	NA	5380	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.025000	0.577114	
mm_155064.1	chrX	42502415	42502615	+	1	NA	NA	NA	-50	NM_011364	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	0.005000	0.472637	
mm_116502.1	chr13	44982877	44983077	-	1	NA	NA	NA	19119	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.020000	0.507463	
mm_99781.1	chr11	107335907	107336107	+	1	NA	NA	NA	134713	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.030000	0.507463	
mm_8054.1	chr1	135374826	135375026	-	1	NA	NA	NA	137	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.100000	0.716418	
mm_125623.1	chr15	61988132	61988332	+	1	NA	NA	NA	2891	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.055000	0.626866	
mm_125374.1	chr15	40014828	40015028	+	1	NA	NA	NA	52279	NR_045719	105976	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0.000000	0.452736	
mm_147637.1	chr18	60269462	60269662	-	1	NA	NA	NA	3705	NM_001034859	225594	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	0.000000	0.412935	
mm_166608.1	chr6	69587753	69587953	-	1	NA	NA	NA	-260679	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.353234	
mm_82997.1	chr9	36693036	36693236	-	1	NA	NA	NA	53	NR_040741	75567	Mm.426883	NR_040741	ENSMUSG00000098304	1700027I24Rik	-	RIKEN cDNA 1700027I24 gene	ncRNA	0.000000	0.437811	
mm_147057.1	chr18	34946449	34946649	-	1	NA	NA	NA	7802	NM_010481	15526	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.005000	0.437811	
mm_10715.1	chr2	22799528	22799728	+	1	NA	NA	NA	25301	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.000000	0.427861	
mm_13486.1	chr2	106693031	106693231	+	1	NA	NA	NA	-328	NM_001143683	77015	Mm.45628	NM_029837	ENSMUSG00000016386	Mpped2	239Fb|2700082O15Rik|AV354767|AW060960	metallophosphoesterase domain containing 2	protein-coding	0.040000	0.611940	
mm_135777.1	chr16	56867566	56867766	-	1	NA	NA	NA	18497	NM_019631	56277	Mm.262328	NM_019631	ENSMUSG00000022754	Tmem45a	C630002M10Rik|M32486|p19.5	transmembrane protein 45a	protein-coding	0.015000	0.477612	
mm_35008.1	chr4	3090125	3090325	-	1	NA	NA	NA	-81858	NM_001167534	100312470	Mm.480297	NM_001167534	ENSMUSG00000094798	Vmn1r2	Gm11776|OTTMUSG00000004179	vomeronasal 1 receptor 2	protein-coding	0.020000	0.363184	
mm_137721.1	chr17	29114402	29114602	+	1	NA	NA	NA	-20554	NM_001002786	442827	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	0.010000	0.437811	
mm_82849.1	chr9	31170515	31170715	-	1	NA	NA	NA	-38816	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.015000	0.507463	4(CCTTATATAGCT,+,0.00)
mm_136815.1	chr17	12396507	12396707	+	1	NA	NA	NA	17998	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.025000	0.517413	
mm_162872.1	chr10	95766742	95766942	+	1	NA	NA	NA	-173821	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.000000	0.393035	
mm_88666.1	chr10	80016803	80017003	+	1	NA	NA	NA	-12	NM_001347074	70719	Mm.243954	NM_027521	ENSMUSG00000035697	Hmha1	6330406L22Rik|AW539505|Ha-1	histocompatibility (minor) HA-1	protein-coding	0.035000	0.587065	
mm_122203.1	chr14	31781597	31781797	-	1	NA	NA	NA	48718	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.015000	0.467662	
mm_168019.1	chrY	90737767	90737967	-	1	NA	NA	NA	17183	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.437811	
mm_63396.1	chr7	127296163	127296363	+	1	NA	NA	NA	3	NM_001253874	16408	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.015000	0.527363	
mm_46758.1	chr5	112249232	112249432	-	1	NA	NA	NA	3186	NM_001312884	12959	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0.030000	0.557214	
mm_144793.1	chr18	35964962	35965162	+	1	NA	NA	NA	232	NR_110349	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.070000	0.686567	
mm_17349.1	chr2	26607893	26608093	-	1	NA	NA	NA	-3576	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.005000	0.492537	
mm_4847.1	chr1	187125015	187125215	+	1	NA	NA	NA	-23	NR_040554	69308	Mm.490882	NR_040554	ENSMUSG00000089730	1700007P06Rik	-	RIKEN cDNA 1700007P06 gene	ncRNA	0.005000	0.477612	
mm_161013.1	chr11	119228408	119228608	+	1	NA	NA	NA	-9	NM_172443	207592	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	0.135000	0.771144	
mm_143267.1	chr17	65639731	65639931	-	1	NA	NA	NA	-75	NM_153519	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.000000	0.522388	
mm_171125.1	chr3	144727691	144727891	+	1	NA	NA	NA	-7456	NM_001282037	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.020000	0.432836	
mm_146002.1	chr18	68442229	68442429	+	1	NA	NA	NA	-13009	NM_001271716	17200	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	0.000000	0.323383	
mm_83950.1	chr9	56926756	56926956	-	1	NA	NA	NA	1515	NM_175483	235406	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	0.005000	0.482587	
mm_35925.1	chr4	53032111	53032311	-	1	NA	NA	NA	20331	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.015000	0.358209	
mm_30716.1	chr4	13037864	13038064	+	1	NA	NA	NA	131127	NM_001171801	208820	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding	0.005000	0.437811	
mm_9460.1	chr1	172894893	172895093	-	1	NA	NA	NA	61	NM_011318	20219	Mm.330510	NM_011318	ENSMUSG00000026542	Apcs	Sap	serum amyloid P-component	protein-coding	0.005000	0.427861	
mm_144536.1	chr18	25568039	25568239	+	1	NA	NA	NA	185844	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.030000	0.532338	
mm_138356.1	chr17	34981848	34982048	+	1	NA	NA	NA	94	NM_001204274	27756	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.110000	0.691542	
mm_172774.1	chr8	94857412	94857612	+	1	NA	NA	NA	62	NM_009090	20021	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	0.135000	0.706468	
mm_51787.1	chr6	88200192	88200392	+	1	NA	NA	NA	1628	NM_008090	14461	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.055000	0.666667	
mm_79933.1	chr9	65676494	65676694	+	1	NA	NA	NA	46	NM_001301307	18247	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0.105000	0.726368	
mm_12610.1	chr2	74683797	74683997	+	1	NA	NA	NA	1574	NM_008273	15431	Mm.207763	NM_008273	ENSMUSG00000042499	Hoxd11	E230017H14Rik|Hox-4.6|Hox-5.4|Hox-5.5	homeobox D11	protein-coding	0.035000	0.557214	
mm_88171.1	chr10	69785415	69785615	+	1	NA	NA	NA	-140017	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.025000	0.492537	
mm_100039.1	chr11	114996625	114996825	+	1	NA	NA	NA	5155	NM_134158	140497	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0.000000	0.343284	-60(ACCTCTAAAAGA,-,0.00),-59(CCTCTAAAAGAG,+,0.00)
mm_136648.1	chr17	5841344	5841544	+	1	NA	NA	NA	64	NM_025664	66616	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0.165000	0.805970	
mm_101678.1	chr11	40429647	40429847	-	1	NA	NA	NA	262935	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.020000	0.457711	
mm_168825.1	chr12	22558796	22558996	+	1	NA	NA	NA	-402250	NR_136920	100043416		NM_001004167	ENSMUSG00000093846	Gm4425	EG432637|Gm5433	KRAB-domain protein pseudogene	pseudo	0.050000	0.557214	
mm_18153.1	chr2	45088151	45088351	-	1	NA	NA	NA	22026	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.000000	0.313433	
mm_93893.1	chr10	125380349	125380549	-	1	NA	NA	NA	-51914	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.010000	0.507463	
mm_85938.1	chr9	112099113	112099313	-	1	NA	NA	NA	19498	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.000000	0.358209	
mm_134975.1	chr16	32052237	32052437	-	1	NA	NA	NA	27005	NM_177326	224105	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 protein (Cdc42/Rac)-activated kinase 2	protein-coding	0.015000	0.432836	
mm_12140.1	chr2	61752263	61752463	+	1	NA	NA	NA	40669	NM_021526	59029	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0.010000	0.358209	
mm_30226.1	chr3	145649173	145649373	-	1	NA	NA	NA	712	NM_010516	16007	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0.050000	0.542289	73(CCCTTTAAAAAA,-,0.00)
mm_163202.1	chr11	96934867	96935067	-	1	NA	NA	NA	5643	NM_146026	217138	Mm.342551	NM_146026	ENSMUSG00000047040	Prr15l	Atad4|BC022765|E230006A12Rik	proline rich 15-like	protein-coding	0.035000	0.572139	
mm_27984.1	chr3	81974447	81974647	-	1	NA	NA	NA	1181	NM_019911	56720	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	0.015000	0.333333	-7(TTTTTTAAAGAC,+,0.00)
mm_47864.1	chr5	134627629	134627829	-	1	NA	NA	NA	11680	NM_001312867	22384	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0.020000	0.522388	-54(CCTTTTAGGTCC,+,0.00)
mm_72673.1	chr8	84909164	84909364	+	1	NA	NA	NA	640	NM_010062	13423	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	0.055000	0.592040	
mm_57195.1	chr6	122850173	122850373	-	1	NA	NA	NA	5884	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.030000	0.457711	-81(TCATTTATACCC,+,0.00)
mm_52739.1	chr6	120463127	120463327	+	1	NA	NA	NA	30	NM_008359	16172	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.135000	0.776119	
mm_117156.1	chr13	61567817	61568017	-	1	NA	NA	NA	2210	NM_026906	117066	Mm.485905	NM_026906	ENSMUSG00000074870	Cts3	1600000I23Rik	cathepsin 3	protein-coding	0.005000	0.328358	73(CTATTTATACTC,+,0.00),88(CCTTATATACAT,+,0.00)
mm_12208.1	chr2	67169149	67169349	+	1	NA	NA	NA	-4585	NM_001033477	383709	Mm.244520	NM_001033477		Gm1322	-	predicted gene 1322	protein-coding	0.010000	0.353234	
mm_34105.1	chr4	139188119	139188319	+	1	NA	NA	NA	-4680	NM_009798	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.030000	0.557214	
mm_101085.1	chr11	11821470	11821670	-	1	NA	NA	NA	-12608	NM_001163360	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.020000	0.402985	
mm_102722.1	chr11	67140882	67141082	-	1	NA	NA	NA	-20902	NR_038055	74184	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	0.020000	0.407960	-23(GTCTATATAGAG,-,0.00)
mm_57747.1	chr6	129097401	129097601	-	1	NA	NA	NA	3402	NM_153506	232409	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0.000000	0.358209	-76(CCCTAAAAAGAG,+,0.00)
mm_40345.1	chr5	45520205	45520405	+	1	NA	NA	NA	76	NM_025895	66999	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	0.100000	0.701493	
mm_17972.1	chr2	37632825	37633025	-	1	NA	NA	NA	14360	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding	0.005000	0.328358	
mm_28529.1	chr3	92647283	92647483	-	1	NA	NA	NA	924	NM_025984	67127	Mm.41969	NM_025984	ENSMUSG00000057609	Lce1a1	2200008B06Rik|Sprrl3	late cornified envelope 1A1	protein-coding	0.005000	0.288557	
mm_90430.1	chr10	127515637	127515837	+	1	NA	NA	NA	798	NM_001098789	407790	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0.015000	0.592040	
mm_109484.1	chr12	111429192	111429392	+	1	NA	NA	NA	11847	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.040000	0.557214	-3(CTTCTTATGGGC,+,0.00)
mm_27058.1	chr3	27656772	27656972	-	1	NA	NA	NA	53567	NM_173182	72007	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.015000	0.477612	
mm_38562.1	chr4	141664017	141664217	-	1	NA	NA	NA	-2	NM_001033150	69582	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	0.185000	0.835821	
mm_142607.1	chr17	46812108	46812308	-	1	NA	NA	NA	19205	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.010000	0.467662	
mm_136913.1	chr17	13016989	13017189	+	1	NA	NA	NA	9250	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.005000	0.427861	21(CTTTTTATACAA,+,0.00)
mm_160550.1	chr9	45906369	45906569	+	1	NA	NA	NA	-100	NM_008794	18554	Mm.3255	NM_008794	ENSMUSG00000035382	Pcsk7	AA959856|PC7|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding	0.155000	0.800995	
mm_57810.1	chr6	129451779	129451979	-	1	NA	NA	NA	121	NM_175526	243653	Mm.131289	NM_175526	ENSMUSG00000033082	Clec1a	5930406N14Rik	C-type lectin domain family 1, member a	protein-coding	0.020000	0.527363	
mm_37031.1	chr4	115074815	115075015	-	1	NA	NA	NA	-13793	NM_001164558	67182	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	0.000000	0.497512	
mm_22011.1	chr2	167775373	167775573	-	1	NA	NA	NA	84296	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.030000	0.562189	
mm_118752.1	chr14	22365138	22365338	+	1	NA	NA	NA	177560	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.015000	0.412935	
mm_61544.1	chr7	79323442	79323642	+	1	NA	NA	NA	50276	NM_018811	54608	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.030000	0.537313	
mm_96188.1	chr11	61684364	61684564	+	1	NA	NA	NA	54	NM_178618	69640	Mm.458559	NM_178618	ENSMUSG00000042377	Fam83g	2310040C09Rik|AI506990|wly	family with sequence similarity 83, member G	protein-coding	0.110000	0.716418	
mm_114901.1	chr13	94548336	94548536	+	1	NA	NA	NA	189476	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.025000	0.517413	
mm_111378.1	chr12	87354048	87354248	-	1	NA	NA	NA	34207	NM_011479	20773	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.005000	0.432836	
mm_148694.1	chr19	5741618	5741818	+	1	NA	NA	NA	814	NM_008520	16998	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0.070000	0.626866	
mm_29120.1	chr3	105052602	105052802	-	1	NA	NA	NA	251	NM_001163333	80281	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.065000	0.651741	
mm_49597.1	chr6	30670137	30670337	+	1	NA	NA	NA	23512	NM_031998	83922	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	0.020000	0.517413	85(TCTTTTATAGTT,+,0.00)
mm_36440.1	chr4	82296578	82296778	-	1	NA	NA	NA	209101	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.010000	0.417910	
mm_15251.1	chr2	154791253	154791453	+	1	NA	NA	NA	243	NM_001139511	19383	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	0.160000	0.766169	
mm_27908.1	chr3	79521235	79521435	-	1	NA	NA	NA	46344	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.005000	0.373134	
mm_106735.1	chr12	3895378	3895578	+	1	NA	NA	NA	3734	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.010000	0.492537	
mm_68693.1	chr7	119523384	119523584	-	1	NA	NA	NA	-2	NM_027943	71830	Mm.84631	NM_027943	ENSMUSG00000030968	Pdilt	1700007B13Rik	protein disulfide isomerase-like, testis expressed	protein-coding	0.005000	0.532338	
mm_57281.1	chr6	124356943	124357143	-	1	NA	NA	NA	43	NM_001177502	76921	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	0.005000	0.472637	
mm_119277.1	chr14	34310672	34310872	+	1	NA	NA	NA	45	NM_008133	14661	Mm.10600	NM_008133	ENSMUSG00000021794	Glud1	AI118167|Gdh-X|Glud|Gludl	glutamate dehydrogenase 1	protein-coding	0.130000	0.746269	18(CGGCTTAAAAGG,-,0.00),20(GCTTAAAAGGGC,+,0.00)
mm_54887.1	chr6	43666091	43666291	-	1	NA	NA	NA	87	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.170000	0.771144	
mm_130657.1	chr15	100637176	100637376	-	1	NA	NA	NA	-336	NM_001033872	207818	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.030000	0.497512	
mm_103198.1	chr11	70650235	70650435	-	1	NA	NA	NA	3048	NM_027445	70510	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0.010000	0.407960	
mm_160168.1	chr7	44943276	44943476	+	1	NA	NA	NA	136	NM_011651	22116	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	0.045000	0.611940	
mm_168850.1	chr12	24083626	24083826	-	1	NA	NA	NA	13543	NM_001256489	66808	Mm.379124	NM_001256489	ENSMUSG00000073158	9030624G23Rik	-	RIKEN cDNA 9030624G23 gene	protein-coding	0.020000	0.562189	65(GTCCCTAAAAAG,-,0.00),67(CCCTAAAAAGTC,+,0.00)
mm_52549.1	chr6	115935492	115935692	+	1	NA	NA	NA	3665	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.020000	0.557214	
mm_110086.1	chr12	24831030	24831230	-	1	NA	NA	NA	-469	NM_026037	67216	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	0.050000	0.616915	
mm_60406.1	chr7	44475891	44476091	+	1	NA	NA	NA	5644	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.487562	
mm_12853.1	chr2	83721016	83721216	+	1	NA	NA	NA	-3281	NM_008402	16410	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.005000	0.422886	
mm_18965.1	chr2	76807324	76807524	-	1	NA	NA	NA	132109	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.502488	
mm_50129.1	chr6	41541849	41542049	+	1	NA	NA	NA	20173	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.000000	0.502488	-86(CTCTATAAATGC,-,0.00)
mm_42359.1	chr5	114911778	114911978	+	1	NA	NA	NA	-11362	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.015000	0.487562	
mm_143992.1	chr17	87797939	87798139	-	1	NA	NA	NA	-45	NM_199251	210741	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	0.075000	0.651741	
mm_88257.1	chr10	73779508	73779708	+	1	NA	NA	NA	-42259	NM_001142760	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0.005000	0.328358	53(CCATTTAAACTA,+,0.00)
mm_141105.1	chr17	26021718	26021918	-	1	NA	NA	NA	42	NM_153140	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.020000	0.522388	
mm_86477.1	chr10	4710043	4710243	+	1	NA	NA	NA	-15	NM_001302531	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.045000	0.587065	
mm_89351.1	chr10	88146969	88147169	+	1	NA	NA	NA	-2	NM_028334	69736	Mm.222184	NM_027191	ENSMUSG00000035351	Nup37	2410003L22Rik|2810039M17Rik	nucleoporin 37	protein-coding	0.095000	0.671642	
mm_150503.1	chr19	39022638	39022838	+	1	NA	NA	NA	15719	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.005000	0.368159	-77(CCCTTTATATGG,+,0.00),-77(CCCTTTATATGG,-,0.00),-75(CTTTATATGGCT,+,0.00)
mm_37673.1	chr4	129121555	129121755	-	1	NA	NA	NA	92	NM_001130419	15444	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	0.050000	0.666667	
mm_163654.1	chr13	70535402	70535602	+	1	NA	NA	NA	-37739	NR_045934	73584	Mm.442491	NR_045934	ENSMUSG00000101051	1700100L14Rik	-	RIKEN cDNA 1700100L14 gene	ncRNA	0.005000	0.502488	
mm_141056.1	chr17	25752269	25752469	-	1	NA	NA	NA	1958	NM_018857	56047	Mm.17510	NM_018857	ENSMUSG00000063011	Msln	MPF	mesothelin	protein-coding	0.040000	0.587065	
mm_1934.1	chr1	86110923	86111123	+	1	NA	NA	NA	947	NM_008311	15559	Mm.439747	NM_008311	ENSMUSG00000026228	Htr2b	5-HT2B|AJ012488|AV377389	5-hydroxytryptamine (serotonin) receptor 2B	protein-coding	0.015000	0.437811	
mm_125642.1	chr15	62178174	62178374	+	1	NA	NA	NA	41177	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.020000	0.492537	
mm_45906.1	chr5	89223772	89223972	-	1	NA	NA	NA	234026	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.020000	0.452736	78(GAGTTTTAAAGG,-,0.00)
mm_62173.1	chr7	97371522	97371722	+	1	NA	NA	NA	5	NM_199035	381903	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	0.065000	0.621891	-40(GCCTCTAAAGGC,-,0.00),-39(CCTCTAAAGGCC,+,0.00)
mm_66780.1	chr7	46958359	46958559	-	1	NA	NA	NA	59	NM_001040695	54122	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	0.095000	0.661692	
mm_158936.1	chr1	74278283	74278483	+	1	NA	NA	NA	-217	NM_174985	227289	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.005000	0.358209	
mm_69.1	chr1	6638007	6638207	+	1	NA	NA	NA	-91944	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.005000	0.368159	
mm_15996.1	chr2	167063120	167063320	+	1	NA	NA	NA	-205	NM_001033196	98999	Mm.297074	NM_001033196	ENSMUSG00000039501	Znfx1	AI481105|Astx3	zinc finger, NFX1-type containing 1	protein-coding	0.120000	0.621891	-32(GTCTATATAAGG,-,0.00)
mm_86333.1	chr9	123100462	123100662	-	1	NA	NA	NA	12643	NM_026917	69035	Mm.28300	NM_026917	ENSMUSG00000025786	Zdhhc3	1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373	zinc finger, DHHC domain containing 3	protein-coding	0.020000	0.512438	
mm_31080.1	chr4	41517343	41517543	+	1	NA	NA	NA	6	NR_045726	76992	Mm.440546	NR_045726	ENSMUSG00000036162	Fam219aos	1700066J24Rik	family with sequence similarity 219, member A, opposite strand	ncRNA	0.000000	0.522388	
mm_56113.1	chr6	87511045	87511245	-	1	NA	NA	NA	-14818	NM_175476	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.005000	0.452736	
mm_50476.1	chr6	48987934	48988134	+	1	NA	NA	NA	1173	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.010000	0.567164	
mm_8547.1	chr1	155146672	155146872	-	1	NA	NA	NA	8	NM_008209	15064	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	0.015000	0.432836	
mm_136292.1	chr16	91441442	91441642	-	1	NA	NA	NA	-23562	NR_077219	100503120	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.035000	0.452736	
mm_51963.1	chr6	91757983	91758183	+	1	NA	NA	NA	49310	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.030000	0.587065	
mm_164760.1	chr17	84956843	84957043	-	1	NA	NA	NA	202	NM_001159497	19043	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.025000	0.502488	
mm_127657.1	chr15	102498635	102498835	+	1	NA	NA	NA	18269	NM_001163643	26404	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0.005000	0.298507	
mm_47337.1	chr5	122502041	122502241	-	1	NA	NA	NA	84	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.155000	0.756219	
mm_100944.1	chr11	6528644	6528844	-	1	NA	NA	NA	16	NR_045893	100041286	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974|OTTMUSG00000005115	small nucleolar RNA host gene 15	ncRNA	0.100000	0.656716	
mm_35936.1	chr4	53032959	53033159	-	1	NA	NA	NA	21179	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.010000	0.447761	
mm_156838.1	chrX	164373397	164373597	+	1	NA	NA	NA	-25	NM_001308489	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.010000	0.398010	-53(CTCCTTATAAAG,-,0.00),-51(CCTTATAAAGCA,+,0.00)
mm_15202.1	chr2	154207042	154207242	+	1	NA	NA	NA	6762	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.015000	0.527363	
mm_168697.1	chr11	97767947	97768147	+	1	NA	NA	NA	-1434	NM_026186	67480	Mm.33206	NM_026186	ENSMUSG00000018541	Cwc25	1300013D05Rik|AA473636|Ccdc49|R75228	CWC25 spliceosome-associated protein	protein-coding	0.055000	0.517413	
mm_98690.1	chr11	96298996	96299196	+	1	NA	NA	NA	-75	NM_008269	15414	Mm.215	NM_008269	ENSMUSG00000000690	Hoxb6	Hox-2.2	homeobox B6	protein-coding	0.070000	0.542289	
mm_11797.1	chr2	43555265	43555465	+	1	NA	NA	NA	40	NM_027552	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.005000	0.487562	
mm_622.1	chr1	40101277	40101477	+	1	NA	NA	NA	-15526	NR_037980	100047133	Mm.447052	NR_037980	ENSMUSG00000097899	Gm16894	-	predicted gene, 16894	ncRNA	0.020000	0.507463	-33(TGCTATTTAAGC,-,0.00)
mm_133447.1	chr16	87823659	87823859	+	1	NA	NA	NA	124805	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.005000	0.343284	
mm_38696.1	chr4	145214108	145214308	-	1	NA	NA	NA	-19203	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.015000	0.562189	
mm_160747.1	chr10	81252768	81252968	+	1	NA	NA	NA	-67	NM_001285855	17179	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0.040000	0.626866	
mm_110438.1	chr12	49776720	49776920	-	1	NA	NA	NA	-295958	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA	0.045000	0.477612	
mm_134118.1	chr16	10313744	10313944	-	1	NA	NA	NA	124	NM_007929	13731	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	0.110000	0.726368	
mm_157646.1	chrX	57304940	57305140	-	1	NA	NA	NA	33689	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	0.010000	0.542289	
mm_56365.1	chr6	93912866	93913066	-	1	NA	NA	NA	-3	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.030000	0.572139	
mm_159807.1	chr5	115731484	115731684	-	1	NA	NA	NA	-25	NM_001080808	75665	Mm.233914	NM_001080808	ENSMUSG00000041609	Ccdc64	2210403N09Rik|BICDR-1|Bicdl1	coiled-coil domain containing 64	protein-coding	0.150000	0.810945	
mm_62937.1	chr7	118855667	118855867	+	1	NA	NA	NA	-8	NM_001081446	434232	Mm.458509	NM_001081446	ENSMUSG00000073856	Iqck	A230094G09Rik	IQ motif containing K	protein-coding	0.140000	0.676617	
mm_63095.1	chr7	122366480	122366680	+	1	NA	NA	NA	77455	NM_008855	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.000000	0.497512	
mm_95506.1	chr11	51961249	51961449	+	1	NA	NA	NA	-6282	NM_029976	52626	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.015000	0.482587	
mm_143857.1	chr17	84185522	84185722	-	1	NA	NA	NA	2325	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.060000	0.487562	
mm_102787.1	chr11	68431892	68432092	-	1	NA	NA	NA	-133	NM_177320	320207	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik	phosphoinositide-3-kinase, regulatory subunit 5, p101	protein-coding	0.055000	0.611940	
mm_134238.1	chr16	11909317	11909517	-	1	NA	NA	NA	6	NM_146067	223978	Mm.86360	NM_146067	ENSMUSG00000065979	Cpped1	C530044N13Rik	calcineurin-like phosphoesterase domain containing 1	protein-coding	0.065000	0.686567	
mm_14248.1	chr2	128125943	128126143	+	1	NA	NA	NA	5	NM_009754	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.095000	0.681592	
mm_96384.1	chr11	67244543	67244743	+	1	NA	NA	NA	6831	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.015000	0.467662	
mm_47837.1	chr5	134314315	134314515	-	1	NA	NA	NA	345	NM_001080746	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.100000	0.721393	
mm_6053.1	chr1	60098046	60098246	-	1	NA	NA	NA	-12	NM_001199061	57750	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	0.055000	0.542289	
mm_43141.1	chr5	125441480	125441680	+	1	NA	NA	NA	12	NM_029752	76809	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	0.140000	0.805970	
mm_72514.1	chr8	83929824	83930024	+	1	NA	NA	NA	-25770	NM_024184	66929	Mm.29680	NM_024184	ENSMUSG00000005470	Asf1b	1700003K02Rik|AA409591	anti-silencing function 1B histone chaperone	protein-coding	0.050000	0.562189	
mm_114258.1	chr13	56728807	56729007	+	1	NA	NA	NA	25239	NM_001164042	17129	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.015000	0.417910	
mm_72635.1	chr8	84686224	84686424	+	1	NA	NA	NA	1538	NM_025788	66830	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	0.030000	0.547264	
mm_109313.1	chr12	109560898	109561098	+	1	NA	NA	NA	-2694	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.040000	0.457711	
mm_161970.1	chr19	10993063	10993263	-	1	NA	NA	NA	87	NM_001034898	545279	Mm.329729	NM_001034898	ENSMUSG00000067571	Ms4a15	E530011F12Rik|Gm1286	membrane-spanning 4-domains, subfamily A, member 15	protein-coding	0.030000	0.557214	
mm_86597.1	chr10	13304021	13304221	+	1	NA	NA	NA	20039	NM_001195096	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.005000	0.477612	
mm_75360.1	chr8	45276938	45277138	-	1	NA	NA	NA	-15007	NM_028066	109821	Mm.33326	NM_028066	ENSMUSG00000031645	F11	1600027G01Rik|AI503996|Cf11|FXI|PTA	coagulation factor XI	protein-coding	0.015000	0.398010	
mm_102044.1	chr11	51998800	51999000	-	1	NA	NA	NA	1566	NM_009458	22210	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	2610301N02Rik|E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0.015000	0.393035	
mm_614.1	chr1	40025276	40025476	+	1	NA	NA	NA	-59392	NM_010555	16178	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.000000	0.402985	
mm_144367.1	chr18	20499113	20499313	+	1	NA	NA	NA	-11061	NM_030596	13512	Mm.106811	NM_030596	ENSMUSG00000056632	Dsg3	bal	desmoglein 3	protein-coding	0.010000	0.393035	
mm_133720.1	chr16	93683139	93683339	+	1	NA	NA	NA	20	NM_173047	109857	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	0.075000	0.656716	
mm_23299.1	chr3	52276056	52276256	+	1	NA	NA	NA	7819	NM_019739	56458	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.010000	0.348259	
mm_120423.1	chr14	65394684	65394884	+	1	NA	NA	NA	30688	NM_001205075	18155	Mm.16347	NM_010932	ENSMUSG00000045731	Pnoc	N/OFQ|Npnc1|OFQ/N	prepronociceptin	protein-coding	0.005000	0.562189	
mm_101515.1	chr11	32409829	32410029	-	1	NA	NA	NA	-45443	NM_173784	327900	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	0.030000	0.557214	
mm_169586.1	chr15	25681629	25681829	+	1	NA	NA	NA	59179	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.015000	0.447761	
mm_115922.1	chr13	23555468	23555668	-	1	NA	NA	NA	536	NM_145713	14957	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	0.045000	0.592040	
mm_90627.1	chr10	128459209	128459409	+	1	NA	NA	NA	73	NM_001114097	68094	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	0.155000	0.766169	
mm_147845.1	chr18	63387057	63387257	-	1	NA	NA	NA	26	NM_001039485	667742	Mm.158720	NM_172629	ENSMUSG00000041482	Piezo2	5930434P17|9030411M15Rik|9430028L06Rik|Fam38b|Fam38b2	piezo-type mechanosensitive ion channel component 2	protein-coding	0.090000	0.691542	
mm_5177.1	chr1	11401174	11401374	-	1	NA	NA	NA	-12831	NM_001310451	320492	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding	0.005000	0.522388	88(CCCTTTATAAGC,+,0.00),88(CCCTTTATAAGC,-,0.00)
mm_30344.1	chr3	151742204	151742404	-	1	NA	NA	NA	7655	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.000000	0.343284	
mm_122840.1	chr14	54724004	54724204	-	1	NA	NA	NA	-11930	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.015000	0.567164	
mm_81382.1	chr9	108936600	108936800	+	1	NA	NA	NA	52	NM_025407	22273	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	0.105000	0.641791	
mm_98550.1	chr11	95056989	95057189	+	1	NA	NA	NA	12109	NM_001306071	16400	Mm.57035	NM_013565	ENSMUSG00000001507	Itga3	AA407068|CD49C|GAPB3	integrin alpha 3	protein-coding	0.020000	0.597015	
mm_112293.1	chr12	114538876	114539076	-	1	NA	NA	NA	-25282	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.015000	0.412935	
mm_60098.1	chr7	35119914	35120114	+	1	NA	NA	NA	721	NM_007678	12606	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.115000	0.756219	
mm_31623.1	chr4	59189572	59189772	+	1	NA	NA	NA	122	NM_011673	22234	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.110000	0.706468	
mm_37684.1	chr4	129223151	129223351	-	1	NA	NA	NA	4660	NM_001285866	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.035000	0.631841	
mm_147356.1	chr18	43373131	43373331	-	1	NA	NA	NA	41	NM_001136086	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.020000	0.462687	-96(TGTTATAAAAGG,-,0.00)
mm_138621.1	chr17	35835428	35835628	+	1	NA	NA	NA	2773	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.050000	0.606965	
mm_124642.1	chr15	4727116	4727316	+	1	NA	NA	NA	6	NM_016704	12274	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	0.035000	0.427861	
mm_159490.1	chr4	42650565	42650765	+	1	NA	NA	NA	61	NM_001199962	100039863	Mm.6660	NM_001164046	ENSMUSG00000073877	Gm13306	OTTMUSG00000011352	predicted gene 13306	protein-coding	0.035000	0.587065	
mm_86087.1	chr9	114902237	114902437	-	1	NA	NA	NA	31650	NM_175380	333433	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	0.015000	0.547264	
mm_43447.1	chr5	136110518	136110718	+	1	NA	NA	NA	5096	NR_106002	102465626		NR_106002	ENSMUSG00000099003	Mir7035	Gm27661|mmu-mir-7035	microRNA 7035	ncRNA	0.005000	0.417910	
mm_61537.1	chr7	79273159	79273359	+	1	NA	NA	NA	-7	NM_018811	54608	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.100000	0.691542	
mm_166746.1	chr6	124996674	124996874	+	1	NA	NA	NA	54	NM_175696	319352	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.150000	0.791045	
mm_155905.1	chrX	101683050	101683250	+	1	NA	NA	NA	42932	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.000000	0.373134	
mm_92574.1	chr10	79916792	79916992	-	1	NA	NA	NA	38	NM_177994	109284	Mm.300416	NM_177994	ENSMUSG00000035781	R3hdm4	AI503502|C030046I01Rik	R3H domain containing 4	protein-coding	0.100000	0.721393	
mm_92221.1	chr10	68277423	68277623	-	1	NA	NA	NA	1203	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.010000	0.283582	-61(GCTTTAATATAC,+,0.00)
mm_62714.1	chr7	110768739	110768939	+	1	NA	NA	NA	633	NM_001276301	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.120000	0.776119	
mm_74490.1	chr8	4779452	4779652	-	1	NA	NA	NA	-18	NM_011369	20419	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	0.060000	0.527363	
mm_42089.1	chr5	110255908	110256108	+	1	NA	NA	NA	13891	NM_028273	72542	Mm.61682	NM_028273	ENSMUSG00000029500	Pgam5	2610528A17Rik	phosphoglycerate mutase family member 5	protein-coding	0.000000	0.268657	-1(TTTTTTAAAGCT,+,0.00)
mm_109418.1	chr12	110486223	110486423	+	1	NA	NA	NA	584	NM_012023	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.025000	0.512438	
mm_77983.1	chr9	7872864	7873064	+	1	NA	NA	NA	206	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.045000	0.656716	
mm_80643.1	chr9	89428367	89428567	+	1	NA	NA	NA	194519	NM_153509	209743	Mm.242899	NM_153509	ENSMUSG00000039313	AF529169	DD1|Kiaa1024	cDNA sequence AF529169	protein-coding	0.010000	0.348259	
mm_160576.1	chr9	58489573	58489773	+	1	NA	NA	NA	1070	NM_176921	319477	Mm.153674	NM_176921	ENSMUSG00000066607	6030419C18Rik	-	RIKEN cDNA 6030419C18 gene	protein-coding	0.015000	0.626866	
mm_100752.1	chr11	4236436	4236636	-	1	NA	NA	NA	-249	NM_001013365	18413	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.045000	0.597015	
mm_123463.1	chr14	65833846	65834046	-	1	NA	NA	NA	23	NM_028039	71988	Mm.249280	NM_028039	ENSMUSG00000022034	Esco2	2410004I17Rik|D030072L07Rik	establishment of sister chromatid cohesion N-acetyltransferase 2	protein-coding	0.095000	0.611940	
mm_127395.1	chr15	101128481	101128681	+	1	NA	NA	NA	59	NM_001277257	11482	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	0.030000	0.562189	
mm_118153.1	chr13	105249630	105249830	-	1	NA	NA	NA	43284	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.040000	0.606965	
mm_169065.1	chr13	26521780	26521980	+	1	NA	NA	NA	-209474	NR_045933	73576	Mm.45473	NR_045933		1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	0.040000	0.512438	
mm_118809.1	chr14	25459182	25459382	+	1	NA	NA	NA	97	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.095000	0.592040	
mm_17527.1	chr2	29253359	29253559	-	1	NA	NA	NA	-466	NR_029460	76220	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0.020000	0.626866	
mm_101649.1	chr11	36598457	36598657	-	1	NA	NA	NA	345684	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.010000	0.388060	
mm_164958.1	chr19	5797213	5797413	-	1	NA	NA	NA	-1332	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.005000	0.388060	
mm_61076.1	chr7	51621759	51621959	+	1	NA	NA	NA	29	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.065000	0.601990	
mm_3678.1	chr1	153695236	153695436	+	1	NA	NA	NA	29663	NM_001347115	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding	0.015000	0.472637	48(CCTCTTAAGCAC,+,0.00)
mm_63112.1	chr7	122671105	122671305	+	1	NA	NA	NA	-539	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.070000	0.592040	
mm_130510.1	chr15	98846037	98846237	-	1	NA	NA	NA	-14629	NM_016781	19082	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.020000	0.547264	
mm_48919.1	chr6	4004118	4004318	+	1	NA	NA	NA	231	NM_025331	66066	Mm.25547	NM_025331	ENSMUSG00000032766	Gng11	0610037B21Rik	guanine nucleotide binding protein (G protein), gamma 11	protein-coding	0.070000	0.676617	
mm_162976.1	chr11	18829649	18829849	+	1	NA	NA	NA	189220	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.000000	0.318408	
mm_2934.1	chr1	132298556	132298756	+	1	NA	NA	NA	30	NM_144810	213417	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0.090000	0.731343	
mm_79722.1	chr9	61520497	61520697	+	1	NA	NA	NA	148231	NM_001083927	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.005000	0.378109	
mm_120167.1	chr14	60767988	60768188	+	1	NA	NA	NA	-46	NM_183175	239126	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	0.005000	0.487562	
mm_146280.1	chr18	77882484	77882684	+	1	NA	NA	NA	-55883	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.000000	0.497512	
mm_154123.1	chr19	57197462	57197662	-	1	NA	NA	NA	69	NM_001103177	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.085000	0.656716	
mm_139868.1	chr17	70529058	70529258	+	1	NA	NA	NA	7048	NM_001128180	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.005000	0.437811	
mm_10887.1	chr2	25262530	25262730	+	1	NA	NA	NA	32	NM_175286	97031	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0.125000	0.691542	
mm_147020.1	chr18	34624477	34624677	-	1	NA	NA	NA	-47	NM_001166407	19348	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	0.075000	0.552239	55(CCTTTTATAGTC,+,0.00)
mm_164654.1	chr17	36032574	36032774	-	1	NA	NA	NA	27	NM_010398	15040	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	0.030000	0.552239	
mm_95455.1	chr11	50376919	50377119	+	1	NA	NA	NA	-700	NM_021510	59013	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.100000	0.686567	
mm_71680.1	chr8	60895476	60895676	+	1	NA	NA	NA	5125	NM_028299	72612	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.005000	0.407960	
mm_99351.1	chr11	101583521	101583721	+	1	NA	NA	NA	1379	NM_144830	217203	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.010000	0.492537	
mm_101617.1	chr11	35840365	35840565	-	1	NA	NA	NA	-5937	NM_025936	104458	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.020000	0.527363	
mm_169919.1	chr16	57391149	57391349	-	1	NA	NA	NA	37972	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.080000	0.552239	27(AACTTTAAATGG,-,0.00)
mm_15694.1	chr2	163659075	163659275	+	1	NA	NA	NA	717	NM_001164053	18769	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.010000	0.457711	
mm_140456.1	chr17	88668582	88668782	+	1	NA	NA	NA	22	NM_023630	71828	Mm.61330	NM_023630	ENSMUSG00000024154	Gtf2a1l	1700011N16Rik|Alf|Gtf2a1lf	general transcription factor IIA, 1-like	protein-coding	0.080000	0.651741	
mm_52079.1	chr6	97828193	97828393	+	1	NA	NA	NA	21235	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.462687	
mm_32276.1	chr4	102760175	102760375	+	1	NA	NA	NA	140	NM_001285859	73094	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0.060000	0.621891	
mm_86756.1	chr10	19609156	19609356	+	1	NA	NA	NA	-12772	NM_178258	237310	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	0.030000	0.532338	
mm_68132.1	chr7	102210295	102210495	-	1	NA	NA	NA	60	NM_001291358	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.050000	0.626866	
mm_54233.1	chr6	28236668	28236868	-	1	NA	NA	NA	24833	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.005000	0.243781	-54(GCTCTTAAAAAG,-,0.00)
mm_68696.1	chr7	119620196	119620396	-	1	NA	NA	NA	2468	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.000000	0.437811	-15(CCTTTTCAACAC,+,0.00)
mm_112041.1	chr12	111671178	111671378	-	1	NA	NA	NA	1060	NM_021273	12709	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.085000	0.661692	
mm_66385.1	chr7	43999109	43999309	-	1	NA	NA	NA	3332	NM_010640	16613	Mm.443378	NM_010640	ENSMUSG00000044485	Klk1b11	Klk11|mGK-11	kallikrein 1-related peptidase b11	protein-coding	0.000000	0.517413	
mm_12909.1	chr2	84840316	84840516	+	1	NA	NA	NA	93	NM_024497	72401	Mm.22716	NM_024497	ENSMUSG00000027075	Slc43a1	2610016F07Rik|AA986141|Lat3|PB39|Pov1|R00504	solute carrier family 43, member 1	protein-coding	0.040000	0.582090	
mm_11895.1	chr2	49811594	49811794	+	1	NA	NA	NA	24008	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.010000	0.487562	
mm_52849.1	chr6	121847720	121847920	+	1	NA	NA	NA	9279	NM_008645	17836	Mm.1311	NM_008645	ENSMUSG00000059908	Mug1	-	murinoglobulin 1	protein-coding	0.000000	0.353234	
mm_96542.1	chr11	68692035	68692235	+	1	NA	NA	NA	220	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.090000	0.676617	
mm_6235.1	chr1	66944929	66945129	-	1	NA	NA	NA	27	NM_021285	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.030000	0.522388	
mm_163532.1	chr13	9684219	9684419	+	1	NA	NA	NA	79491	NM_001347471	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.030000	0.522388	
mm_172266.1	chr6	76684246	76684446	-	1	NA	NA	NA	-558371	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.040000	0.532338	-21(GACTCTATAAGA,-,0.00)
mm_29248.1	chr3	107218127	107218327	-	1	NA	NA	NA	3505	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.507463	
mm_17204.1	chr2	25469650	25469850	-	1	NA	NA	NA	-1	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.010000	0.577114	
mm_153599.1	chr19	43752863	43753063	-	1	NA	NA	NA	37	NM_144874	226139	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	0.115000	0.691542	
mm_170696.1	chr2	133971772	133971972	-	1	NA	NA	NA	407164	NR_037273	100526500		NR_037273	ENSMUSG00000093338	Mir3090	mmu-mir-3090	microRNA 3090	ncRNA	0.035000	0.522388	
mm_49777.1	chr6	34920815	34921015	+	1	NA	NA	NA	-45	NM_009292	20899	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0.045000	0.572139	
mm_108212.1	chr12	76966021	76966221	+	1	NA	NA	NA	-3873	NM_001146176	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.010000	0.547264	-34(CACTATAAAAGG,-,0.00)
mm_129956.1	chr15	85127749	85127949	-	1	NA	NA	NA	4108	NM_080470	140557	Mm.182737	NM_080470	ENSMUSG00000022432	Smc1b	SMC-1B|SMC1beta|Smc1l2	structural maintenance of chromosomes 1B	protein-coding	0.010000	0.353234	
mm_93764.1	chr10	120201000	120201200	-	1	NA	NA	NA	437	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.030000	0.437811	
mm_87175.1	chr10	38965494	38965694	+	1	NA	NA	NA	79	NM_010681	16775	Mm.258065	NM_010681	ENSMUSG00000019846	Lama4	-	laminin, alpha 4	protein-coding	0.040000	0.621891	
mm_33117.1	chr4	124742838	124743038	+	1	NA	NA	NA	-843	NR_030480	735263		NR_030480	ENSMUSG00000076119	Mir698	Mirn698|mir-698|mmu-mir-698	microRNA 698	ncRNA	0.050000	0.601990	
mm_95454.1	chr11	50376893	50377093	+	1	NA	NA	NA	-726	NM_021510	59013	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.110000	0.691542	
mm_169563.1	chr15	15879055	15879255	-	1	NA	NA	NA	-898946	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.025000	0.492537	
mm_111480.1	chr12	98734560	98734760	-	1	NA	NA	NA	-15	NM_011877	24000	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0.090000	0.646766	-76(CCCTTTAAATCC,+,0.00)
mm_103551.1	chr11	77718673	77718873	-	1	NA	NA	NA	6520	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.015000	0.467662	
mm_39180.1	chr4	155784913	155785113	-	1	NA	NA	NA	861	NM_001033394	320587	Mm.384382	NM_001033394	ENSMUSG00000073680	Tmem88b	A230069A22Rik	transmembrane protein 88B	protein-coding	0.005000	0.582090	
mm_120040.1	chr14	56402609	56402809	+	1	NA	NA	NA	12	NM_001033043	30054	Mm.287783	NM_001033043	ENSMUSG00000000365	Rnf17	MMIP-2|Mmip2|TDRD4	ring finger protein 17	protein-coding	0.065000	0.621891	
mm_151002.1	chr19	46654295	46654495	+	1	NA	NA	NA	18605	NM_007809	13074	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.065000	0.611940	
mm_56197.1	chr6	88841840	88842040	-	1	NA	NA	NA	-5	NM_030251	80283	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.125000	0.721393	
mm_59170.1	chr7	24399922	24400122	+	1	NA	NA	NA	394	NM_028047	71997	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.080000	0.601990	-34(GCCGTTAAAAGG,-,0.00)
mm_93037.1	chr10	88343857	88344057	-	1	NA	NA	NA	13118	NM_027878	71712	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.005000	0.412935	
mm_89705.1	chr10	97647321	97647521	+	1	NA	NA	NA	3353	NM_007884	13516	Mm.148886	NM_007884	ENSMUSG00000019936	Epyc	Dspg3|PG-Lb|SLRR3B	epiphycan	protein-coding	0.010000	0.402985	
mm_47358.1	chr5	122779546	122779746	-	1	NA	NA	NA	-236	NM_145358	207565	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.085000	0.651741	
mm_31595.1	chr4	57892831	57893031	+	1	NA	NA	NA	23333	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.025000	0.487562	
mm_100646.1	chr11	3104662	3104862	-	1	NA	NA	NA	-19259	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.025000	0.447761	
mm_29378.1	chr3	108818276	108818476	-	1	NA	NA	NA	22126	NM_011504	20912	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.005000	0.452736	
mm_8626.1	chr1	156270683	156270883	-	1	NA	NA	NA	32565	NM_001134741	214575	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	0.020000	0.383085	
mm_4362.1	chr1	171927895	171928095	+	1	NA	NA	NA	10458	NM_030710	30925	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	0.005000	0.412935	
mm_139991.1	chr17	72911432	72911632	+	1	NA	NA	NA	-6773	NM_029999	77889	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.020000	0.597015	
mm_2733.1	chr1	128244248	128244448	+	1	NA	NA	NA	167	NM_026390	67812	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0.125000	0.706468	
mm_59962.1	chr7	30428060	30428260	+	1	NA	NA	NA	4856	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.035000	0.606965	
mm_119597.1	chr14	51007816	51008016	+	1	NA	NA	NA	-13	NM_029145	75019	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	0.010000	0.482587	10(GTGTTTAAAAGC,-,0.00)
mm_168647.1	chr1	185401301	185401501	+	1	NA	NA	NA	38306	NM_029735	107508	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	0.025000	0.482587	
mm_143435.1	chr17	70851665	70851865	-	1	NA	NA	NA	-31	NM_001164075	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.055000	0.582090	
mm_296.1	chr1	23272237	23272437	+	1	NA	NA	NA	68	NR_029533	387225		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0.020000	0.432836	
mm_135762.1	chr16	56717156	56717356	-	1	NA	NA	NA	194	NM_001252443	21787	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0.140000	0.731343	
mm_12807.1	chr2	80302157	80302357	+	1	NA	NA	NA	9787	NM_177256	320769	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	0.000000	0.353234	
mm_138101.1	chr17	34092299	34092499	+	1	NA	NA	NA	20	NM_008206	15001	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	0.025000	0.512438	
mm_100994.1	chr11	8446189	8446389	-	1	NA	NA	NA	218246	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.015000	0.497512	
mm_43334.1	chr5	135009873	135010073	+	1	NA	NA	NA	517	NR_033794	68758	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.055000	0.582090	
mm_143307.1	chr17	65986797	65986997	-	1	NA	NA	NA	-35710	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.005000	0.378109	
mm_6772.1	chr1	84131235	84131435	-	1	NA	NA	NA	87626	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.462687	
mm_153478.1	chr19	41274231	41274431	-	1	NA	NA	NA	-10327	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.030000	0.492537	-55(TTTTTTATAGGG,+,0.00)
mm_105230.1	chr11	102316527	102316727	-	1	NA	NA	NA	660	NM_001044383	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.045000	0.651741	
mm_24713.1	chr3	95228650	95228850	+	1	NA	NA	NA	-73	NM_019914	56772	Mm.331208	NM_019914	ENSMUSG00000053192	Mllt11	AI839562|Af1q|Zfp692	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11	protein-coding	0.135000	0.766169	
mm_123800.1	chr14	70520118	70520318	-	1	NA	NA	NA	42	NM_009755	12153	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.090000	0.711443	-75(TTCCCTAAAAGG,-,0.00),-73(CCCTAAAAGGGG,+,0.00)
mm_93857.1	chr10	122097037	122097237	-	1	NA	NA	NA	-35	NM_153059	216395	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	0.105000	0.726368	
mm_165434.1	chr2	153611345	153611545	-	1	NA	NA	NA	21336	NM_001195390	99311	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	0.030000	0.507463	
mm_104174.1	chr11	87734534	87734734	-	1	NA	NA	NA	-2931	NM_009296	20922	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0.015000	0.522388	
mm_171729.1	chr4	91371966	91372166	-	1	NA	NA	NA	-11	NM_207686	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding	0.140000	0.776119	
mm_150927.1	chr19	46267747	46267947	+	1	NA	NA	NA	-36890	NM_001177369	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.010000	0.437811	
mm_30144.1	chr3	142395572	142395772	-	1	NA	NA	NA	24	NM_001190853	56376	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0.120000	0.751244	
mm_52321.1	chr6	108836300	108836500	+	1	NA	NA	NA	7759	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.010000	0.477612	
mm_148383.1	chr19	3323247	3323447	+	1	NA	NA	NA	46	NM_013495	12894	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0.140000	0.741294	
mm_55487.1	chr6	69243629	69243829	-	1	NA	NA	NA	83445	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.373134	
mm_141874.1	chr17	34839266	34839466	-	1	NA	NA	NA	2347	NM_001163770	112403	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	0.030000	0.432836	82(CCCCCTAAAAAC,-,0.00),84(CCCTAAAAACCC,+,0.00)
mm_147028.1	chr18	34688717	34688917	-	1	NA	NA	NA	31570	NM_010280	14587	Mm.16520	NM_010280	ENSMUSG00000024366	Gfra3	GFRalpha3|Y15110	glial cell line derived neurotrophic factor family receptor alpha 3	protein-coding	0.000000	0.368159	
mm_26154.1	chr3	138143804	138144004	+	1	NA	NA	NA	366	NM_175389	108943	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	0.125000	0.666667	
mm_110246.1	chr12	31351295	31351495	-	1	NA	NA	NA	76	NM_007861	13382	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	0.085000	0.621891	
mm_172077.1	chr6	142536969	142537169	+	1	NA	NA	NA	-29112	NM_001302765	16832	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0.000000	0.512438	
mm_4474.1	chr1	173419323	173419523	+	1	NA	NA	NA	-1181	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.005000	0.432836	
mm_141229.1	chr17	27426234	27426434	-	1	NA	NA	NA	68237	NR_106077	102466228		NR_106077	ENSMUSG00000106215	Mir7218	mmu-mir-7218	microRNA 7218	ncRNA	0.015000	0.547264	
mm_16065.1	chr2	167940700	167940900	+	1	NA	NA	NA	8473	NM_011201	19246	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.025000	0.487562	-89(TTCTATATATGG,-,0.00)
mm_139288.1	chr17	48300287	48300487	+	1	NA	NA	NA	349	NM_001033405	328833	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0.020000	0.597015	
mm_133910.1	chr16	97553930	97554130	+	1	NA	NA	NA	17947	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.005000	0.358209	
mm_57187.1	chr6	122848774	122848974	-	1	NA	NA	NA	7283	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.020000	0.487562	
mm_161793.1	chr17	47737728	47737928	+	1	NA	NA	NA	-103	NM_001161723	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.085000	0.746269	
mm_150666.1	chr19	42035929	42036129	+	1	NA	NA	NA	-9	NM_020033	56642	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	0.035000	0.611940	-36(GGGCCTATAAAG,-,0.00),-34(GCCTATAAAGAC,+,0.00),-34(GCCTATAAAGAC,-,0.00)
mm_25098.1	chr3	101237445	101237645	+	1	NA	NA	NA	50394	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.035000	0.512438	
mm_150773.1	chr19	44294100	44294300	+	1	NA	NA	NA	524	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.050000	0.522388	
mm_160003.1	chr6	122336925	122337125	-	1	NA	NA	NA	2632	NM_001042623	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.020000	0.412935	
mm_123227.1	chr14	59643440	59643640	-	1	NA	NA	NA	18259	NM_145463	219134	Mm.275409	NM_145463	ENSMUSG00000044461	Shisa2	9430059P22Rik|MAd2|Tmem46|mShisa|shisa	shisa family member 2	protein-coding	0.020000	0.482587	
mm_110722.1	chr12	69681732	69681932	-	1	NA	NA	NA	20	NM_001135559	20663	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	son of sevenless homolog 2 (Drosophila)	protein-coding	0.175000	0.830846	
mm_7599.1	chr1	125913040	125913240	-	1	NA	NA	NA	-212	NM_001311089	72585	Mm.490405	NM_145100	ENSMUSG00000026344	Lypd1	2700050C12Rik|AI853408|C530008O16Rik|Lynx2|Lypdc1	Ly6/Plaur domain containing 1	protein-coding	0.045000	0.597015	
mm_53389.1	chr6	129542083	129542283	+	1	NA	NA	NA	-8899	NR_045270	100504641	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0.015000	0.477612	
mm_166049.1	chr4	131389888	131390088	+	1	NA	NA	NA	-379514	NR_130167	77835	Mm.348412	NR_130167	ENSMUSG00000086262	A930031H19Rik	A930004I12Rik	RIKEN cDNA A930031H19 gene	ncRNA	0.000000	0.358209	
mm_11103.1	chr2	28192816	28193016	+	1	NA	NA	NA	-177	NM_001038613	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.065000	0.661692	
mm_129364.1	chr15	77970437	77970637	-	1	NA	NA	NA	287	NM_018749	55944	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	0.090000	0.681592	
mm_85608.1	chr9	107605052	107605252	-	1	NA	NA	NA	250	NM_009153	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.045000	0.651741	
mm_94035.1	chr10	127998228	127998428	-	1	NA	NA	NA	9180	NM_013786	27400	Mm.26719	NM_013786	ENSMUSG00000025396	Hsd17b6	17betaHSD9|Hsd17b9|Rdh8	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding	0.000000	0.383085	
mm_94119.1	chr10	128626659	128626859	-	1	NA	NA	NA	-253	NM_013765	27370	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0.040000	0.427861	80(CCATTTCTAGGG,+,0.00)
mm_170230.1	chr17	82409931	82410131	-	1	NA	NA	NA	668194	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0.020000	0.616915	
mm_111492.1	chr12	99162551	99162751	-	1	NA	NA	NA	157	NR_038130	67639	Mm.87374	NR_038130		4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.015000	0.497512	
mm_17942.1	chr2	36103970	36104170	-	1	NA	NA	NA	-10	NM_001083127	16874	Mm.12881	NM_008500	ENSMUSG00000026890	Lhx6	Lhx6.1	LIM homeobox protein 6	protein-coding	0.045000	0.532338	-34(GGCTTTAAATGC,-,0.00),-32(CTTTAAATGCCC,+,0.00)
mm_72778.1	chr8	86745360	86745560	+	1	NA	NA	NA	-239	NR_027829	666945	Mm.391806	NR_027829		Gm10638	ENSMUSG00000074178	predicted gene 10638	ncRNA	0.100000	0.671642	
mm_63614.1	chr7	128237259	128237459	+	1	NA	NA	NA	2	NM_146205	233912	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0.090000	0.631841	
mm_100316.1	chr11	117987323	117987523	+	1	NA	NA	NA	566	NM_133757	74451	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.045000	0.472637	16(GTCCTTTAAAGG,-,0.00),17(TCCTTTAAAGGA,+,0.00),17(TCCTTTAAAGGA,-,0.00),18(CCTTTAAAGGAA,+,0.00)
mm_100026.1	chr11	114908191	114908391	+	1	NA	NA	NA	18250	NM_170758	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.015000	0.542289	
mm_33231.1	chr4	126850299	126850499	+	1	NA	NA	NA	96629	NM_001035526	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.000000	0.542289	
mm_105189.1	chr11	101986869	101987069	-	1	NA	NA	NA	-87	NM_029287	75437	Mm.108632	NM_029287	ENSMUSG00000010841	1700006E09Rik	-	RIKEN cDNA 1700006E09 gene	protein-coding	0.020000	0.432836	
mm_70781.1	chr8	22407368	22407568	+	1	NA	NA	NA	-3872	NM_020560	57312	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	0.040000	0.492537	
mm_15769.1	chr2	164332643	164332843	+	1	NA	NA	NA	-22	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.010000	0.502488	
mm_11199.1	chr2	29125127	29125327	+	1	NA	NA	NA	235	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.145000	0.726368	
mm_63441.1	chr7	127481248	127481448	+	1	NA	NA	NA	-3873	NM_010183	14123	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.005000	0.373134	
mm_168512.1	chr1	156523934	156524134	+	1	NA	NA	NA	-34753	NM_009595	11352	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0.080000	0.606965	
mm_162703.1	chr10	22148733	22148933	-	1	NA	NA	NA	437	NM_001254744	319887	Mm.177746	NM_001254744	ENSMUSG00000097327	E030030I06Rik	-	RIKEN cDNA E030030I06 gene	protein-coding	0.125000	0.701493	
mm_3258.1	chr1	136247590	136247790	+	1	NA	NA	NA	13183	NM_001101516	383563	Mm.40367	NM_001101516	ENSMUSG00000052759	Gpr25	Gm1300	G protein-coupled receptor 25	protein-coding	0.020000	0.597015	
mm_112398.1	chr12	119238780	119238980	-	1	NA	NA	NA	-604	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.055000	0.577114	
mm_49206.1	chr6	15720661	15720861	+	1	NA	NA	NA	100	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.075000	0.631841	
mm_9254.1	chr1	171535192	171535392	-	1	NA	NA	NA	2	NM_010584	16429	Mm.247426	NM_010584	ENSMUSG00000038209	Itln1	IntL|Itln|Itln2|Itln3|Itln5|Itlna|Lfr	intelectin 1 (galactofuranose binding)	protein-coding	0.000000	0.497512	-34(CCCCATAAAAGG,-,0.00),-32(CCATAAAAGGAC,+,0.00)
mm_77758.1	chr8	128896544	128896744	-	1	NA	NA	NA	168848	NM_029061	74703	Mm.196017	NM_029061	ENSMUSG00000025808	Ccdc7a	4930517G15Rik|4930540C21Rik|Biot2|Ccdc7	coiled-coil domain containing 7A	protein-coding	0.000000	0.447761	
mm_64312.1	chr7	141864564	141864764	+	1	NA	NA	NA	25592	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.035000	0.567164	
mm_67251.1	chr7	75498545	75498745	-	1	NA	NA	NA	43111	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.010000	0.477612	
mm_20611.1	chr2	131853628	131853828	-	1	NA	NA	NA	6019	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	0.005000	0.447761	
mm_66682.1	chr7	45814189	45814389	-	1	NA	NA	NA	27	NM_011181	19158	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0.080000	0.671642	
mm_81838.1	chr9	118480485	118480685	+	1	NA	NA	NA	2396	NM_010136	13813	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	0.050000	0.592040	
mm_117011.1	chr13	58113189	58113389	-	1	NA	NA	NA	-10861	NM_001195075	100503085	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0.050000	0.587065	
mm_15606.1	chr2	160731622	160731822	+	1	NA	NA	NA	412	NM_021280	18803	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.165000	0.805970	
mm_31390.1	chr4	48043568	48043768	+	1	NA	NA	NA	-1637	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.055000	0.532338	
mm_20126.1	chr2	121290204	121290404	-	1	NA	NA	NA	702	NM_032393	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.035000	0.562189	
mm_85094.1	chr9	92250419	92250619	-	1	NA	NA	NA	325	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.065000	0.641791	
mm_87698.1	chr10	59702554	59702754	+	1	NA	NA	NA	91	NM_001291443	216001	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0.080000	0.626866	
mm_79545.1	chr9	57911009	57911209	+	1	NA	NA	NA	123	NM_001122873	69459	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0.080000	0.641791	
mm_50931.1	chr6	57667231	57667431	+	1	NA	NA	NA	24747	NM_025574	66459	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	0.010000	0.412935	
mm_96022.1	chr11	59543490	59543690	+	1	NA	NA	NA	904	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.010000	0.452736	
mm_22559.1	chr3	9886847	9887047	+	1	NA	NA	NA	-53268	NM_001195031	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.025000	0.522388	1(CATTCTATAAGG,-,0.00)
mm_58691.1	chr7	12922218	12922418	+	1	NA	NA	NA	7	NM_009095	20103	Mm.5291	NM_009095	ENSMUSG00000012848	Rps5	AA617411	ribosomal protein S5	protein-coding	0.100000	0.611940	-32(TTGCATAAAAGC,-,0.00)
mm_163502.1	chr12	112829368	112829568	-	1	NA	NA	NA	-79	NM_028023	71963	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	0.160000	0.746269	
mm_102875.1	chr11	69409337	69409537	-	1	NA	NA	NA	4238	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.075000	0.696517	
mm_138207.1	chr17	34304912	34305112	+	1	NA	NA	NA	-855	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.020000	0.487562	
mm_110370.1	chr12	40199190	40199390	-	1	NA	NA	NA	25	NM_001033437	380755	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	0.020000	0.447761	
mm_131923.1	chr16	23320740	23320940	+	1	NA	NA	NA	30370	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.025000	0.477612	
mm_169014.1	chr13	107890064	107890264	-	1	NA	NA	NA	-100	NM_145456	67263	Mm.490418	NM_145456	ENSMUSG00000032846	Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.110000	0.666667	64(CCGTTTATAGGG,-,0.00)
mm_30436.1	chr3	153624646	153624846	-	1	NA	NA	NA	100387	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.000000	0.522388	
mm_44352.1	chr5	17795353	17795553	-	1	NA	NA	NA	40443	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.228856	
mm_23619.1	chr3	65678300	65678500	+	1	NA	NA	NA	12172	NM_001166659	624866	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	0.005000	0.343284	
mm_99866.1	chr11	109397355	109397555	+	1	NA	NA	NA	-28491	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.010000	0.522388	
mm_171418.1	chr4	133089080	133089280	-	1	NA	NA	NA	-41453	NM_153423	242687	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.015000	0.417910	
mm_42343.1	chr5	114906587	114906787	+	1	NA	NA	NA	9753	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.020000	0.582090	
mm_14675.1	chr2	139494095	139494295	+	1	NA	NA	NA	275	NM_175467	228677	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	0.015000	0.467662	
mm_38839.1	chr4	149165991	149166191	-	1	NA	NA	NA	616	NM_001081274	110208	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.010000	0.398010	
mm_104976.1	chr11	100246038	100246238	-	1	NA	NA	NA	2764	NM_001313958	16666	Mm.422799	NM_008470	ENSMUSG00000053797	Krt16	AI324768|CK-16|K16|Krt1-16	keratin 16	protein-coding	0.010000	0.492537	
mm_57517.1	chr6	125494554	125494754	-	1	NA	NA	NA	101	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.050000	0.542289	
mm_148676.1	chr19	5638150	5638350	+	1	NA	NA	NA	760	NM_009045	19697	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.010000	0.512438	
mm_44248.1	chr5	5374673	5374873	-	1	NA	NA	NA	5478	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.005000	0.407960	-36(CCTTTTCAAGAG,+,0.00)
mm_62306.1	chr7	100178636	100178836	+	1	NA	NA	NA	53	NM_001190871	57442	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	0.050000	0.582090	
mm_70169.1	chr7	143627836	143628036	-	1	NA	NA	NA	-91	NM_175649	244237	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	0.015000	0.393035	
mm_110707.1	chr12	69322196	69322396	-	1	NA	NA	NA	25615	NM_027117	69554	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0.005000	0.467662	
mm_58178.1	chr6	142804402	142804602	-	1	NA	NA	NA	-36	NM_001145390	330440	Mm.484618	NM_001033417	ENSMUSG00000048473	Sult6b2	Gm766	sulfotransferase family 6B, member 2	protein-coding	0.000000	0.427861	
mm_44303.1	chr5	8996561	8996761	-	1	NA	NA	NA	485	NM_023733	74114	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.020000	0.482587	
mm_69230.1	chr7	127707967	127708167	-	1	NA	NA	NA	-420	NR_030428	791073		NR_030428	ENSMUSG00000076454	Mir762	Mirn762|mir-762|mmu-mir-762	microRNA 762	ncRNA	0.020000	0.587065	
mm_120368.1	chr14	64583629	64583829	+	1	NA	NA	NA	-4386	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA	0.020000	0.432836	
mm_17679.1	chr2	32287909	32288109	-	1	NA	NA	NA	60	NR_110965	72931	Mm.27344	NM_175190	ENSMUSG00000044627	Swi5	1500019F05Rik|2900010J23Rik|AI046671	SWI5 recombination repair homolog (yeast)	protein-coding	0.090000	0.626866	
mm_86884.1	chr10	22158375	22158575	+	1	NA	NA	NA	-134	NM_009016	19368	Mm.458004	NM_009016		Raet1a	RAE-1alpha|Rae1alpha|Raet1	retinoic acid early transcript 1, alpha	protein-coding	0.080000	0.711443	
mm_65428.1	chr7	25297812	25298012	-	1	NA	NA	NA	43	NM_008776	18476	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	0.050000	0.572139	
mm_104934.1	chr11	100088168	100088368	-	1	NA	NA	NA	-42	NM_001159374	16670	Mm.4161	NM_010665	ENSMUSG00000046095	Krt32	Ha3|Hka2|K32|Krt1-2|Krtha2	keratin 32	protein-coding	0.015000	0.517413	-33(GAGTATAAAAAG,-,0.00)
mm_87165.1	chr10	36996952	36997152	+	1	NA	NA	NA	22508	NM_008229	15182	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.015000	0.422886	
mm_121276.1	chr14	103650126	103650326	+	1	NA	NA	NA	-17	NM_198014	105439	Mm.27548	NM_198014	ENSMUSG00000055717	Slain1	9630044O09Rik|AA675320|AW742596	SLAIN motif family, member 1	protein-coding	0.110000	0.726368	
mm_55392.1	chr6	60403602	60403802	-	1	NA	NA	NA	5	NR_015565	208079	Mm.131226	NM_177329	ENSMUSG00000046764	A530053G22Rik	-	RIKEN cDNA A530053G22 gene	ncRNA	0.010000	0.348259	-39(TCATTTAAAAGC,-,0.00)
mm_115241.1	chr13	110392841	110393041	+	1	NA	NA	NA	-2103	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.005000	0.482587	
mm_61687.1	chr7	81005265	81005465	+	1	NA	NA	NA	11681	NM_178707	233410	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	8430405N24|A730014M16Rik|Znf592|mKIAA0211	zinc finger protein 592	protein-coding	0.000000	0.407960	
mm_2273.1	chr1	91250246	91250446	+	1	NA	NA	NA	27	NM_026454	67921	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0.105000	0.631841	-73(TTTTTTAAAGTG,+,0.00)
mm_72908.1	chr8	90935142	90935342	+	1	NA	NA	NA	2993	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.005000	0.353234	
mm_121072.1	chr14	98167317	98167517	+	1	NA	NA	NA	2348	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.030000	0.547264	
mm_64926.1	chr7	16273819	16274019	-	1	NA	NA	NA	-227	NM_001136270	66300	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	0.045000	0.661692	
mm_122376.1	chr14	39473935	39474135	-	1	NA	NA	NA	-947	NM_008734	18183	Mm.258705	NM_008734	ENSMUSG00000041014	Nrg3	ska	neuregulin 3	protein-coding	0.065000	0.611940	
mm_68401.1	chr7	109602645	109602845	-	1	NA	NA	NA	13823	NR_037617	76954	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.010000	0.517413	
mm_76106.1	chr8	80395085	80395285	-	1	NA	NA	NA	-98860	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.015000	0.412935	
mm_89547.1	chr10	94576162	94576362	+	1	NA	NA	NA	-1	NM_177026	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.020000	0.542289	
mm_143373.1	chr17	67632580	67632780	-	1	NA	NA	NA	43	NM_001033340	240131	Mm.295736	NM_001033340	ENSMUSG00000073375	Lrrc30	Gm326	leucine rich repeat containing 30	protein-coding	0.020000	0.552239	
mm_106481.1	chr11	120189801	120190001	-	1	NA	NA	NA	-45	NR_030682	100042332	Mm.269766	NR_030682		2810410L24Rik	-	RIKEN cDNA 2810410L24 gene	ncRNA	0.090000	0.736318	
mm_119166.1	chr14	32085586	32085786	+	1	NA	NA	NA	6	NR_104303	105638	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	0.095000	0.631841	
mm_107496.1	chr12	38783613	38783813	+	1	NA	NA	NA	2	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.020000	0.477612	
mm_108417.1	chr12	81971084	81971284	+	1	NA	NA	NA	111154	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	0.025000	0.437811	
mm_18242.1	chr2	52175040	52175240	-	1	NA	NA	NA	102303	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.010000	0.522388	
mm_112231.1	chr12	113482199	113482399	-	1	NA	NA	NA	-7266	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.512438	
mm_42086.1	chr5	110204691	110204891	+	1	NA	NA	NA	-26213	NM_001253814	71782	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	0.020000	0.422886	
mm_122347.1	chr14	38657883	38658083	-	1	NA	NA	NA	-240319	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA	0.000000	0.432836	
mm_67534.1	chr7	81345113	81345313	-	1	NA	NA	NA	21	NM_009092	20068	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.085000	0.626866	-47(CGCTTTATAGGC,-,0.00)
mm_23898.1	chr3	83031641	83031841	+	1	NA	NA	NA	5588	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.025000	0.452736	
mm_80021.1	chr9	67984577	67984777	+	1	NA	NA	NA	41037	NR_045745	434412	Mm.490707	NR_045745	ENSMUSG00000111841	Gm20745	-	predicted gene, 20745	ncRNA	0.000000	0.248756	-100(GCCTTTAAACCC,+,0.00)
mm_109250.1	chr12	109454888	109455088	+	1	NA	NA	NA	1533	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.010000	0.532338	
mm_154210.1	chr19	59076202	59076402	-	1	NA	NA	NA	-233	NM_001114312	71653	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Kiaa1598|Shootin1|mKIAA1598	shootin 1	protein-coding	0.020000	0.587065	
mm_68961.1	chr7	126581670	126581870	-	1	NA	NA	NA	1466	NM_001329789	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.005000	0.442786	
mm_49643.1	chr6	30805441	30805641	+	1	NA	NA	NA	64242	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.020000	0.567164	
mm_114531.1	chr13	73603964	73604164	+	1	NA	NA	NA	62	NM_146047	218335	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	0.160000	0.741294	
mm_165617.1	chr3	57413805	57414005	+	1	NA	NA	NA	-11505	NM_145539	229302	Mm.26618	NM_145539	ENSMUSG00000027801	Tm4sf4	Iltmp	transmembrane 4 superfamily member 4	protein-coding	0.005000	0.298507	
mm_144133.1	chr18	4928692	4928892	+	1	NA	NA	NA	116306	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA	0.010000	0.467662	-38(CCTTTTCAAGTC,+,0.00)
mm_16734.1	chr2	9176765	9176965	-	1	NA	NA	NA	-12650	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.020000	0.472637	
mm_156173.1	chrX	130213128	130213328	+	1	NA	NA	NA	463486	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.000000	0.278607	
mm_155446.1	chrX	73494993	73495193	+	1	NA	NA	NA	-7993	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.005000	0.502488	
mm_86205.1	chr9	119982923	119983123	-	1	NA	NA	NA	1635	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.065000	0.626866	
mm_159563.1	chr4	109117844	109118044	-	1	NA	NA	NA	92	NM_173350	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.090000	0.766169	
mm_134655.1	chr16	22059956	22060156	-	1	NA	NA	NA	50572	NR_027488	75826	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.005000	0.452736	41(GTTTTTAAACTG,+,0.00)
mm_77697.1	chr8	126589617	126589817	-	1	NA	NA	NA	3719	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.005000	0.393035	
mm_111920.1	chr12	108875502	108875702	-	1	NA	NA	NA	17596	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.020000	0.512438	
mm_167123.1	chr7	121914053	121914253	+	1	NA	NA	NA	49115	NR_073548	20277	Mm.7709	NM_011325	ENSMUSG00000030873	Scnn1b	-	sodium channel, nonvoltage-gated 1 beta	protein-coding	0.020000	0.562189	
mm_14618.1	chr2	136763946	136764146	+	1	NA	NA	NA	50596	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.000000	0.348259	
mm_120744.1	chr14	73231847	73232047	+	1	NA	NA	NA	-5944	NM_175116	67168	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.005000	0.452736	
mm_20444.1	chr2	129309871	129310071	-	1	NA	NA	NA	1	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.015000	0.457711	-36(GACTATAAAAAG,-,0.00)
mm_82378.1	chr9	14634138	14634338	-	1	NA	NA	NA	-19238	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.045000	0.597015	
mm_149869.1	chr19	25148374	25148574	+	1	NA	NA	NA	-88728	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.010000	0.462687	
mm_119098.1	chr14	30896517	30896717	+	1	NA	NA	NA	10141	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.025000	0.542289	
mm_134810.1	chr16	25040017	25040217	-	1	NA	NA	NA	-19522	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.015000	0.557214	
mm_74811.1	chr8	22653332	22653532	-	1	NA	NA	NA	5	NM_011130	18970	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	0.110000	0.701493	
mm_79859.1	chr9	65021700	65021900	+	1	NA	NA	NA	-83	NM_021345	57874	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	0.080000	0.651741	
mm_125979.1	chr15	76328153	76328353	+	1	NA	NA	NA	856	NM_175399	109075	Mm.322752	NM_175399	ENSMUSG00000034259	Exosc4	1110039I09Rik|1500001N04Rik|Rrp41	exosome component 4	protein-coding	0.025000	0.507463	
mm_86468.1	chr10	4605753	4605953	+	1	NA	NA	NA	-6136	NM_001302532	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.015000	0.407960	
mm_97563.1	chr11	78935370	78935570	+	1	NA	NA	NA	10179	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.577114	
mm_62313.1	chr7	100235021	100235221	+	1	NA	NA	NA	7514	NM_027629	70974	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0.000000	0.228856	
mm_132122.1	chr16	31715998	31716198	+	1	NA	NA	NA	-38252	NM_001252436	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.005000	0.318408	
mm_49690.1	chr6	33476872	33477072	+	1	NA	NA	NA	227822	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.000000	0.303483	
mm_87352.1	chr10	43593332	43593532	+	1	NA	NA	NA	5	NR_033558	414125	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	0.020000	0.502488	
mm_45050.1	chr5	41763940	41764140	-	1	NA	NA	NA	180	NM_007524	12020	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0.095000	0.731343	
mm_138977.1	chr17	45433746	45433946	+	1	NA	NA	NA	15	NR_130961	105246278	Mm.206588	NR_130960	ENSMUSG00000097119	B230354K17Rik	-	RIKEN cDNA B230354K17 gene	ncRNA	0.060000	0.572139	
mm_135062.1	chr16	34081816	34082016	-	1	NA	NA	NA	-114913	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.030000	0.492537	
mm_136051.1	chr16	78576558	78576758	-	1	NA	NA	NA	30	NM_001252438	67102	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.150000	0.761194	
mm_35431.1	chr4	36654064	36654264	-	1	NA	NA	NA	-8711	NR_030545	100124458		NR_030545	ENSMUSG00000077851	Mir876	Mirn876|mir-876|mmu-mir-876	microRNA 876	ncRNA	0.000000	0.373134	
mm_95387.1	chr11	49245382	49245582	+	1	NA	NA	NA	1291	NM_001110148	17308	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.020000	0.601990	
mm_4666.1	chr1	180382117	180382317	+	1	NA	NA	NA	-51668	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.020000	0.572139	
mm_131124.1	chr16	5855636	5855836	+	1	NA	NA	NA	-29057	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.000000	0.537313	
mm_92228.1	chr10	68673540	68673740	-	1	NA	NA	NA	-50106	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.015000	0.492537	
mm_98342.1	chr11	93099125	93099325	+	1	NA	NA	NA	-65	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	0.095000	0.681592	
mm_10024.1	chr1	192092341	192092541	-	1	NA	NA	NA	158	NM_011633	22033	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.120000	0.681592	
mm_20777.1	chr2	143952173	143952373	-	1	NA	NA	NA	36942	NM_019771	56431	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.010000	0.497512	
mm_141974.1	chr17	35158347	35158547	-	1	NA	NA	NA	6430	NM_001199044	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.015000	0.547264	
mm_129044.1	chr15	75135027	75135227	-	1	NA	NA	NA	-20134	NM_001310438	546644		NM_008531	ENSMUSG00000022582	Ly6g	Gr-1|Gr1|Ly-6G	lymphocyte antigen 6 complex, locus G	protein-coding	0.005000	0.512438	
mm_164244.1	chr15	95654260	95654460	-	1	NA	NA	NA	411	NM_207533	223843	Mm.152937	NM_207533	ENSMUSG00000045608	Dbx2	9430056A22Rik|9630005K15|AI846217|Gm1229	developing brain homeobox 2	protein-coding	0.095000	0.751244	
mm_384.1	chr1	34068485	34068685	+	1	NA	NA	NA	-48774	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.020000	0.512438	
mm_14414.1	chr2	130405677	130405877	+	1	NA	NA	NA	481	NM_001163483	75656	Mm.174788	NM_029375	ENSMUSG00000027409	1700020A23Rik	-	RIKEN cDNA 1700020A23 gene	protein-coding	0.010000	0.557214	
mm_154326.1	chrM	2324	2524	+	1	NA	NA	NA	NA	NA									0.045000	0.407960	-36(TCCTATTTAAGA,-,0.00),39(AGCTATTAATGG,-,0.00)
mm_55476.1	chr6	68880603	68880803	-	1	NA	NA	NA	446471	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.467662	-26(ATTTTTATAGGC,+,0.00)
mm_67257.1	chr7	75669488	75669688	-	1	NA	NA	NA	-178750	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.020000	0.492537	
mm_20617.1	chr2	131855371	131855571	-	1	NA	NA	NA	4276	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	0.010000	0.442786	
mm_158199.1	chrX	105278952	105279152	-	1	NA	NA	NA	65317	NR_029910	723861		NR_029910	ENSMUSG00000065499	Mir384	Mirn384|mir-384|mmu-mir-384	microRNA 384	ncRNA	0.020000	0.412935	
mm_46398.1	chr5	104092777	104092977	-	1	NA	NA	NA	-15269	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.010000	0.502488	
mm_41322.1	chr5	90472401	90472601	+	1	NA	NA	NA	11631	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.482587	
mm_147398.1	chr18	44429420	44429620	-	1	NA	NA	NA	49020	NM_027490	70640	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0.005000	0.462687	
mm_98395.1	chr11	94296929	94297129	+	1	NA	NA	NA	24882	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.045000	0.452736	
mm_142166.1	chr17	36167565	36167765	-	1	NA	NA	NA	872	NM_001081032	667977	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0.105000	0.651741	
mm_62518.1	chr7	102229896	102230096	+	1	NA	NA	NA	6968	NR_111937	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.015000	0.522388	
mm_27486.1	chr3	54686667	54686867	-	1	NA	NA	NA	-6338	NM_019995	56790	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0.005000	0.457711	
mm_90113.1	chr10	117277380	117277580	+	1	NA	NA	NA	4792	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.010000	0.437811	
mm_29509.1	chr3	116253375	116253575	-	1	NA	NA	NA	9	NM_022427	64378	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.015000	0.532338	
mm_107241.1	chr12	26479015	26479215	+	1	NA	NA	NA	9900	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.005000	0.447761	
mm_148814.1	chr19	6297813	6298013	+	1	NA	NA	NA	-8544	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.015000	0.557214	
mm_98484.1	chr11	94951064	94951264	+	1	NA	NA	NA	14940	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.060000	0.592040	
mm_144885.1	chr18	36799204	36799404	+	1	NA	NA	NA	-2459	NR_027885	378472	Mm.482379	NR_027885		Vaultrc5	Gm22653|Mvg1	vault RNA component 5	ncRNA	0.010000	0.422886	-7(TTTTTTAAGGGG,+,0.00)
mm_88820.1	chr10	80803187	80803387	+	1	NA	NA	NA	-1961	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.005000	0.601990	
mm_142741.1	chr17	48409401	48409601	-	1	NA	NA	NA	319	NM_001110832	18044	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	0.100000	0.726368	
mm_169832.1	chr1	62540905	62541105	-	1	NA	NA	NA	-162312	NM_001077406	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.035000	0.472637	-98(CTCCTTAAGAGG,-,0.00)
mm_35858.1	chr4	49473779	49473979	-	1	NA	NA	NA	-22770	NM_001164565	230161	Mm.30101	NM_001164565	ENSMUSG00000070985	Acnat1	AI132189	acyl-coenzyme A amino acid N-acyltransferase 1	protein-coding	0.000000	0.477612	
mm_154498.1	chrM	11572	11772	-	1	NA	NA	NA	NA	NA									0.000000	0.318408	-10(TCCTATAAAAGT,-,0.00)
mm_46454.1	chr5	105117541	105117741	-	1	NA	NA	NA	-7349	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.000000	0.323383	
mm_156802.1	chrX	163909051	163909251	+	1	NA	NA	NA	134	NM_001290379	108012	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	0.100000	0.746269	
mm_40847.1	chr5	73380438	73380638	+	1	NA	NA	NA	-25540	NM_181323	231293	Mm.280211	NM_181323	ENSMUSG00000029154	Cwh43	C130090K23Rik|imds-60	cell wall biogenesis 43 C-terminal homolog	protein-coding	0.010000	0.497512	
mm_96800.1	chr11	69981251	69981451	+	1	NA	NA	NA	-116	NM_018740	54351	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.085000	0.756219	
mm_170761.1	chr2	159656147	159656347	+	1	NA	NA	NA	-291094	NR_040498	71081	Mm.383491	NR_040498	ENSMUSG00000085198	4933416E03Rik	-	RIKEN cDNA 4933416E03 gene	ncRNA	0.025000	0.482587	
mm_157943.1	chrX	85776525	85776725	-	1	NA	NA	NA	194	NM_001294140	14933	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	0.090000	0.706468	
mm_88619.1	chr10	79859275	79859475	+	1	NA	NA	NA	-3212	NR_105875	102465549		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	0.025000	0.641791	
mm_94459.1	chr11	6416130	6416330	+	1	NA	NA	NA	360	NM_008907	268373	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	0.135000	0.815920	
mm_95977.1	chr11	58963680	58963880	+	1	NA	NA	NA	-1	NM_031172	56631	Mm.179733	NM_031172	ENSMUSG00000036964	Trim17	Rnf16|terf	tripartite motif-containing 17	protein-coding	0.045000	0.641791	
mm_93607.1	chr10	117234206	117234406	-	1	NA	NA	NA	4375	NM_029906	77397	Mm.118350	NM_029906	ENSMUSG00000020177	9530003J23Rik	Lyzf1	RIKEN cDNA 9530003J23 gene	protein-coding	0.010000	0.477612	78(TGCTCTTAAAGG,-,0.00),79(GCTCTTAAAGGT,+,0.00)
mm_725.1	chr1	42952906	42953106	+	1	NA	NA	NA	134	NM_053107	93690	Mm.444976	NM_053107	ENSMUSG00000041907	Gpr45	9230112G11Rik|AW046772	G protein-coupled receptor 45	protein-coding	0.060000	0.756219	
mm_19965.1	chr2	117968707	117968907	-	1	NA	NA	NA	142395	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA	0.000000	0.417910	-14(TCATTTAAGGAC,+,0.00)
mm_103733.1	chr11	79962320	79962520	-	1	NA	NA	NA	-33	NM_144826	216987	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.065000	0.552239	-34(CGCTAGAAAAGA,-,0.00)
mm_68918.1	chr7	126461598	126461798	-	1	NA	NA	NA	1375	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.015000	0.587065	
mm_145407.1	chr18	57468454	57468654	+	1	NA	NA	NA	68	NM_001134697	629147	Mm.57415	NM_001134697	ENSMUSG00000069372	Ctxn3	ENSMUSG00000069372	cortexin 3	protein-coding	0.025000	0.472637	89(GGGTTTTAATGG,-,0.00)
mm_119192.1	chr14	32513417	32513617	+	1	NA	NA	NA	-4	NM_001081221	319955	Mm.318310	NM_177043	ENSMUSG00000054051	Ercc6	4732403I04|C130058G22Rik|CSB	excision repair cross-complementing rodent repair deficiency, complementation group 6	protein-coding	0.110000	0.641791	
mm_26418.1	chr3	142611303	142611503	+	1	NA	NA	NA	-9260	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.015000	0.432836	-49(ACGTATAAAAGC,-,0.00)
mm_24130.1	chr3	88207218	88207418	+	1	NA	NA	NA	-7853	NR_037276	100526540		NR_037276	ENSMUSG00000092988	Mir3093	mir-3093|mmu-mir-3093	microRNA 3093	ncRNA	0.055000	0.606965	
mm_59263.1	chr7	24884692	24884892	+	1	NA	NA	NA	78	NM_023133	20085	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	0.135000	0.761194	
mm_30971.1	chr4	34485690	34485890	+	1	NA	NA	NA	-64825	NM_001007589	433693	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.075000	0.577114	
mm_11868.1	chr2	48950021	48950221	+	1	NA	NA	NA	613	NM_029924	109241	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630|OTTMUSG00000012483	methyl-CpG binding domain protein 5	protein-coding	0.010000	0.592040	
mm_34159.1	chr4	139431036	139431236	+	1	NA	NA	NA	50477	NM_001160319	69116	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0.010000	0.467662	
mm_139121.1	chr17	47436637	47436837	+	1	NA	NA	NA	98	NM_145489	224833	Mm.218444	NM_145489	ENSMUSG00000034382	AI661453	-	expressed sequence AI661453	protein-coding	0.085000	0.686567	
mm_98905.1	chr11	98026825	98027025	+	1	NA	NA	NA	1	NM_009078	19921	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0.060000	0.532338	
mm_118417.1	chr14	7801043	7801243	+	1	NA	NA	NA	-16814	NM_001081427	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.035000	0.482587	
mm_20464.1	chr2	129367896	129368096	-	1	NA	NA	NA	-1906	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.010000	0.517413	
mm_66509.1	chr7	45101034	45101234	-	1	NA	NA	NA	2688	NM_010189	14132	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0.025000	0.452736	
mm_98930.1	chr11	98355241	98355441	+	1	NA	NA	NA	2942	NR_045477	69338	Mm.398308	NR_045477	ENSMUSG00000085944	1700003D09Rik	-	RIKEN cDNA 1700003D09 gene	ncRNA	0.020000	0.606965	
mm_64213.1	chr7	141476334	141476534	+	1	NA	NA	NA	54	NM_001252588	64540	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.015000	0.646766	
mm_89596.1	chr10	95970759	95970959	+	1	NA	NA	NA	30196	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.000000	0.432836	
mm_119513.1	chr14	47385532	47385732	+	1	NA	NA	NA	11772	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.045000	0.557214	
mm_60954.1	chr7	47052569	47052769	+	1	NA	NA	NA	2029	NM_026436	67893	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.000000	0.547264	
mm_167739.1	chr9	107249688	107249888	-	1	NA	NA	NA	-17879	NM_153413	208869	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	0.020000	0.457711	
mm_43074.1	chr5	124446701	124446901	+	1	NA	NA	NA	97	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.020000	0.582090	
mm_171154.1	chr3	19933911	19934111	+	1	NA	NA	NA	-23043	NM_001276250	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.005000	0.467662	
mm_52966.1	chr6	123129714	123129914	+	1	NA	NA	NA	6498	NM_001170333	26888	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0.000000	0.313433	
mm_128901.1	chr15	73310965	73311165	-	1	NA	NA	NA	-56183	NR_029561	387169		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA	0.000000	0.358209	
mm_143074.1	chr17	57031403	57031603	-	1	NA	NA	NA	4	NM_010613	16549	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0.125000	0.741294	
mm_80503.1	chr9	78615405	78615605	+	1	NA	NA	NA	-41	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.030000	0.537313	
mm_36051.1	chr4	57301393	57301593	-	1	NA	NA	NA	344	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.065000	0.542289	
mm_86286.1	chr9	121857882	121858082	-	1	NA	NA	NA	18	NM_019814	56295	Mm.347915	NM_019814	ENSMUSG00000038412	Higd1a	2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1	HIG1 domain family, member 1A	protein-coding	0.085000	0.711443	
mm_167530.1	chr9	21290944	21291144	-	1	NA	NA	NA	165	NM_009878	12581	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	protein-coding	0.045000	0.621891	
mm_43646.1	chr5	138262308	138262508	+	1	NA	NA	NA	-1637	NR_045821	69004	Mm.439868	NR_045821	ENSMUSG00000085227	6330418K02Rik	-	RIKEN cDNA 6330418K02 gene	ncRNA	0.010000	0.532338	
mm_162475.1	chr1	133163840	133164040	+	1	NA	NA	NA	32774	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.120000	0.711443	
mm_102408.1	chr11	59182698	59182898	-	1	NA	NA	NA	28	NM_175452	118454	Mm.40016	NM_080454	ENSMUSG00000043448	Gjc2	B230382L12Rik|Cx47|Gja12	gap junction protein, gamma 2	protein-coding	0.015000	0.626866	
mm_94013.1	chr10	127643552	127643752	-	1	NA	NA	NA	666	NM_009284	20852	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.015000	0.582090	
mm_145792.1	chr18	65244216	65244416	+	1	NA	NA	NA	-4545	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.025000	0.502488	-69(ACTTTTAAACCC,+,0.00),-53(TCCCATAAAGGG,-,0.00),-30(AGGCCTAAAAGC,-,0.00)
mm_29339.1	chr3	108213553	108213753	-	1	NA	NA	NA	-3126	NM_175183	72522	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	0.015000	0.507463	
mm_162280.1	chr1	17505171	17505371	+	1	NA	NA	NA	-96630	NM_053191	94227	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	0.000000	0.298507	
mm_54212.1	chr6	25689691	25689891	-	1	NA	NA	NA	189	NM_010338	14763	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	0.060000	0.582090	
mm_151182.1	chr19	53357148	53357348	+	1	NA	NA	NA	26802	NM_001008543	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.005000	0.482587	
mm_1629.1	chr1	74427258	74427458	+	1	NA	NA	NA	17974	NM_009509	22349	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.030000	0.577114	
mm_79734.1	chr9	62344663	62344863	+	1	NA	NA	NA	3420	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.065000	0.616915	
mm_39789.1	chr5	30465968	30466168	+	1	NA	NA	NA	-9	NM_029285	75434	Mm.332291	NM_029285	ENSMUSG00000029182	1700001C02Rik	1700047H18Rik	RIKEN cDNA 1700001C02 gene	protein-coding	0.080000	0.636816	
mm_117905.1	chr13	99430215	99430415	-	1	NA	NA	NA	-17489	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.040000	0.522388	
mm_158969.1	chr1	106004122	106004322	+	1	NA	NA	NA	13816	NM_001122675	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.040000	0.462687	20(TGCTTTAAAGAC,-,0.00)
mm_626.1	chr1	40225171	40225371	+	1	NA	NA	NA	191	NM_008362	16177	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.040000	0.487562	
mm_79361.1	chr9	54328845	54329045	+	1	NA	NA	NA	-27375	NR_045805	73567	Mm.211290	NM_001033169	ENSMUSG00000074343	Gldnos	1700104A03Rik	gliomedin, opposite strand	ncRNA	0.015000	0.522388	
mm_105092.1	chr11	100903365	100903565	-	1	NA	NA	NA	36075	NM_213660	20848	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.030000	0.562189	
mm_96727.1	chr11	69684304	69684504	+	1	NA	NA	NA	1150	NM_001159505	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.010000	0.512438	
mm_14321.1	chr2	129365101	129365301	+	1	NA	NA	NA	-4701	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.015000	0.437811	
mm_83934.1	chr9	56635905	56636105	-	1	NA	NA	NA	-357	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.085000	0.656716	
mm_46937.1	chr5	114773403	114773603	-	1	NA	NA	NA	-11	NM_001347400	26431	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0.125000	0.736318	
mm_52477.1	chr6	114306204	114306404	+	1	NA	NA	NA	23669	NM_178703	232333	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.000000	0.383085	
mm_79769.1	chr9	62829008	62829208	+	1	NA	NA	NA	-9679	NM_001033175	76524	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.020000	0.467662	
mm_71893.1	chr8	69832704	69832904	+	1	NA	NA	NA	100	NM_001024954	80720	Mm.210823	NM_030555	ENSMUSG00000031860	Pbx4	2410015M21Rik|AI429113|AW045266	pre B cell leukemia homeobox 4	protein-coding	0.090000	0.711443	
mm_166395.1	chr5	135013065	135013265	-	1	NA	NA	NA	-8	NR_026688	69812	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0.005000	0.557214	
mm_109244.1	chr12	109452710	109452910	+	1	NA	NA	NA	-13	NR_033813	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.030000	0.601990	
mm_8752.1	chr1	160307346	160307546	-	1	NA	NA	NA	-11474	NR_035448	100316784		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	0.010000	0.507463	
mm_97752.1	chr11	80494948	80495148	+	1	NA	NA	NA	14058	NR_126552	77417	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	0.030000	0.507463	
mm_50305.1	chr6	47796747	47796947	+	1	NA	NA	NA	6805	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.005000	0.477612	
mm_85423.1	chr9	103489233	103489433	-	1	NA	NA	NA	-9005	NM_001002896	107993	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding	0.015000	0.547264	
mm_35141.1	chr4	11386666	11386866	-	1	NA	NA	NA	12	NM_001347052	207920	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	0.060000	0.606965	
mm_156683.1	chrX	159371899	159372099	+	1	NA	NA	NA	-196	NM_025437	66235	Mm.294623	NM_025437	ENSMUSG00000067194	Eif1ax	1500010B24Rik|AI426898|Eif1ay	eukaryotic translation initiation factor 1A, X-linked	protein-coding	0.070000	0.726368	
mm_20281.1	chr2	126890882	126891082	-	1	NA	NA	NA	11403	NR_106202	102466258		NR_106202	ENSMUSG00000098896	Mir3473g	Gm27751|mmu-mir-3473g	microRNA 3473g	ncRNA	0.015000	0.388060	
mm_13734.1	chr2	118111789	118111989	+	1	NA	NA	NA	13	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.065000	0.651741	-30(CTCTTTAAAAGG,-,0.00),-29(TCTTTAAAAGGT,+,0.00),-28(CTTTAAAAGGTC,+,0.00)
mm_63821.1	chr7	134669599	134669799	+	1	NA	NA	NA	-988	NM_001033420	330662	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik	dedicator of cytokinesis 1	protein-coding	0.010000	0.527363	
mm_160929.1	chr11	89418812	89419012	-	1	NA	NA	NA	36	NM_172534	382543	Mm.60997	NM_172534	ENSMUSG00000047773	Ankfn1	4932411E22Rik|Gm1175|nmf9	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding	0.030000	0.522388	
mm_79091.1	chr9	46242628	46242828	+	1	NA	NA	NA	1884	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.045000	0.592040	
mm_116672.1	chr13	49212267	49212467	-	1	NA	NA	NA	3659	NM_026738	68480	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.005000	0.477612	
mm_105151.1	chr11	101462642	101462842	-	1	NA	NA	NA	3457	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.005000	0.542289	
mm_99054.1	chr11	99051561	99051761	+	1	NA	NA	NA	10401	NM_010517	16010	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.015000	0.567164	
mm_96621.1	chr11	69126098	69126298	+	1	NA	NA	NA	-179	NM_011786	23801	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	0.050000	0.592040	
mm_111807.1	chr12	105032184	105032384	-	1	NA	NA	NA	-5	NR_003145	69434	Mm.380736	NR_003145		Snhg10	1700026B20Rik|AI642517	small nucleolar RNA host gene 10	ncRNA	0.115000	0.676617	
mm_19148.1	chr2	80524630	80524830	-	1	NA	NA	NA	56452	NM_001290745	50884	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0.020000	0.477612	
mm_1696.1	chr1	75142686	75142886	+	1	NA	NA	NA	0	NM_170755	227298	Mm.273062	NM_170755	ENSMUSG00000049339	Fam134a	-	family with sequence similarity 134, member A	protein-coding	0.155000	0.726368	
mm_91044.1	chr10	18545967	18546167	-	1	NA	NA	NA	9	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	0.020000	0.597015	
mm_58701.1	chr7	12927325	12927525	+	1	NA	NA	NA	9	NM_029809	381845	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0.015000	0.512438	
mm_151112.1	chr19	47864326	47864526	+	1	NA	NA	NA	-1119	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.020000	0.497512	
mm_146180.1	chr18	75394451	75394651	+	1	NA	NA	NA	27186	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.020000	0.378109	
mm_170921.1	chr2	37261809	37262009	-	1	NA	NA	NA	-5042	NM_001081010	545417	Mm.379955	NM_001081010		Olfr367-ps	EG545417|MOR128-1|ORL1283|OTTMUSG00000012147|Olfr367	olfactory receptor 367, pseudogene	protein-coding	0.030000	0.527363	
mm_139284.1	chr17	48299831	48300031	+	1	NA	NA	NA	-107	NM_001033405	328833	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0.015000	0.467662	
mm_68254.1	chr7	105581178	105581378	-	1	NA	NA	NA	213	NM_001253885	11785	Mm.38469	NM_009685	ENSMUSG00000037032	Apbb1	Fe65|Rir	amyloid beta (A4) precursor protein-binding, family B, member 1	protein-coding	0.125000	0.761194	
mm_66220.1	chr7	34654268	34654468	-	1	NA	NA	NA	-1527	NM_146188	233107	Mm.486198	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	0.175000	0.820896	
mm_172013.1	chr6	110010141	110010341	-	1	NA	NA	NA	-635271	NM_001346640	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.055000	0.646766	
mm_41181.1	chr5	88316982	88317182	+	1	NA	NA	NA	-230	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.000000	0.432836	-88(GTTTATAAAAGG,-,0.00)
mm_109602.1	chr12	112679472	112679672	+	1	NA	NA	NA	732	NM_001100460	382639	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0.115000	0.651741	
mm_143851.1	chr17	84156304	84156504	-	1	NA	NA	NA	31543	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.045000	0.592040	
mm_60780.1	chr7	45565035	45565235	+	1	NA	NA	NA	-5018	NM_009737	12036	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.000000	0.502488	
mm_28878.1	chr3	97767637	97767837	-	1	NA	NA	NA	277	NR_110360	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.060000	0.681592	
mm_100151.1	chr11	116092098	116092298	+	1	NA	NA	NA	-5203	NM_001347642	22378	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0.025000	0.557214	-53(GACCTTAAATGG,-,0.00),-51(CCTTAAATGGCA,+,0.00)
mm_114820.1	chr13	91741387	91741587	+	1	NA	NA	NA	-34	NM_028790	74156	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0.075000	0.701493	
mm_73654.1	chr8	110956248	110956448	+	1	NA	NA	NA	36483	NM_009179	20444	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	0.010000	0.457711	
mm_43352.1	chr5	135168839	135169039	+	1	NA	NA	NA	567	NM_009745	12054	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	0.090000	0.582090	
mm_145660.1	chr18	61130661	61130861	+	1	NA	NA	NA	13293	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.010000	0.457711	
mm_129625.1	chr15	80098831	80099031	-	1	NA	NA	NA	7597	NM_207708	20972	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0.025000	0.577114	
mm_135470.1	chr16	45844906	45845106	-	1	NA	NA	NA	-628	NM_001252442	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology like domain, family B, member 2	protein-coding	0.030000	0.532338	
mm_153002.1	chr19	30115168	30115368	-	1	NA	NA	NA	60173	NM_138595	104174	Mm.274852	NM_138595	ENSMUSG00000024827	Gldc	D030049L12Rik|D19Wsu57e	glycine decarboxylase	protein-coding	0.035000	0.577114	
mm_75839.1	chr8	70599328	70599528	-	1	NA	NA	NA	4947	NM_023627	71780	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.010000	0.582090	
mm_108643.1	chr12	85904142	85904342	+	1	NA	NA	NA	79292	NM_001081423	320244	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0.020000	0.597015	
mm_110099.1	chr12	25272742	25272942	-	1	NA	NA	NA	143668	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.000000	0.462687	
mm_25667.1	chr3	121851083	121851283	+	1	NA	NA	NA	-35968	NM_008991	19299	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.005000	0.452736	
mm_161831.1	chr17	81649299	81649499	-	1	NA	NA	NA	88988	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.432836	
mm_76953.1	chr8	106007004	106007204	-	1	NA	NA	NA	-4374	NM_025518	66369	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	0.015000	0.457711	-38(CCCTTTATAAAC,+,0.00),-38(CCCTTTATAAAC,-,0.00)
mm_48852.1	chr5	149636077	149636277	-	1	NA	NA	NA	138	NM_013559	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.100000	0.681592	
mm_61479.1	chr7	75655854	75656054	+	1	NA	NA	NA	-192384	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.025000	0.427861	
mm_95239.1	chr11	44617400	44617600	+	1	NA	NA	NA	-600	NM_001290711	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.020000	0.522388	
mm_162366.1	chr1	65100550	65100750	+	1	NA	NA	NA	2713	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.040000	0.552239	45(TCTCATAAAGCC,+,0.00)
mm_173166.1	chrX	41959388	41959588	+	1	NA	NA	NA	-47587	NM_001033422	331401	Mm.259498	NM_001033422	ENSMUSG00000037475	Thoc2	6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2	THO complex 2	protein-coding	0.005000	0.328358	
mm_66693.1	chr7	45916646	45916846	-	1	NA	NA	NA	4103	NM_001146346	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.025000	0.532338	
mm_166276.1	chr5	90696226	90696426	+	1	NA	NA	NA	-55799	NM_001310656	73246	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.025000	0.462687	
mm_171949.1	chr5	76905327	76905527	-	1	NA	NA	NA	87	NM_173765	231326	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	0.110000	0.681592	
mm_165828.1	chr3	151439136	151439336	+	1	NA	NA	NA	1354	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.015000	0.472637	
mm_159305.1	chr2	180026486	180026686	+	1	NA	NA	NA	1599	NM_177727	241846	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	0.020000	0.517413	
mm_63418.1	chr7	127470949	127471149	+	1	NA	NA	NA	-565	NM_145589	233895	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.055000	0.577114	13(GGCTTTAAAGAA,-,0.00)
mm_24260.1	chr3	89187300	89187500	+	1	NA	NA	NA	4175	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.055000	0.686567	
mm_41388.1	chr5	90768584	90768784	+	1	NA	NA	NA	166	NM_023785	57349	Mm.293614	NM_023785	ENSMUSG00000029372	Ppbp	2400003M24Rik|AI854500|CTAP3|CTAPIII|Cxcl7|LA-PF4|LDGF|MDGF|NAP-2|NAP-2-L1|Scyb7|TGB|TGB1|THBGB1|b-TG1|beta-TG	pro-platelet basic protein	protein-coding	0.010000	0.507463	
mm_158131.1	chrX	103185874	103186074	-	1	NA	NA	NA	690	NM_008671	17954	Mm.388694	NM_008671	ENSMUSG00000082229	Nap1l2	Bpx	nucleosome assembly protein 1-like 2	protein-coding	0.025000	0.417910	3(GCTCTTAAAAAG,-,0.00)
mm_64403.1	chr7	142509824	142510024	+	1	NA	NA	NA	-3153	NR_033261	677289	Mm.350054	NR_033261	ENSMUSG00000043795	Prr33	ENSMUSG00000043795|Gm14492|OTTMUSG00000016823	proline rich 33	ncRNA	0.025000	0.363184	
mm_129753.1	chr15	82354143	82354343	-	1	NA	NA	NA	48	NM_025987	67130	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	0.095000	0.676617	
mm_19247.1	chr2	84743675	84743875	-	1	NA	NA	NA	-2597	NR_029544	387149		NR_029544	ENSMUSG00000065484	Mir130a	Mirn130|Mirn130a|mir-130a	microRNA 130a	ncRNA	0.035000	0.582090	
mm_161139.1	chr13	21363072	21363272	+	1	NA	NA	NA	352	NM_016684	22758	Mm.24124	NM_016684	ENSMUSG00000036721	Zscan12	2510038J07Rik|FPM315|Zfp96|mKIAA0426|zfp-96	zinc finger and SCAN domain containing 12	protein-coding	0.015000	0.432836	
mm_171479.1	chr4	145868673	145868873	+	1	NA	NA	NA	31554	NR_033612	236069	Mm.276881	NR_033612	ENSMUSG00000096233	Gm13238	OTTMUSG00000011065	carnitine deficiency-associated gene expressed in ventricle 3 pseudogene	pseudo	0.015000	0.507463	
mm_16147.1	chr2	172287896	172288096	+	1	NA	NA	NA	39504	NM_008561	17201	Mm.57183	NM_008561	ENSMUSG00000038537	Mc3r	MC3-R	melanocortin 3 receptor	protein-coding	0.005000	0.442786	
mm_147427.1	chr18	46280731	46280931	-	1	NA	NA	NA	19	NM_172627	225467	Mm.262096	NM_172627	ENSMUSG00000024477	Pggt1b	2010207C17Rik|2610100E13|AI451237|AI551093|BGG1|GGT1	protein geranylgeranyltransferase type I, beta subunit	protein-coding	0.080000	0.631841	
mm_9287.1	chr1	171634708	171634908	-	1	NA	NA	NA	7092	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.005000	0.432836	
mm_153623.1	chr19	44005129	44005329	-	1	NA	NA	NA	-18709	NM_030703	93721	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	0.010000	0.492537	
mm_168128.1	chr10	23475885	23476085	-	1	NA	NA	NA	-126042	NM_010167	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.010000	0.502488	
mm_24954.1	chr3	96635754	96635954	+	1	NA	NA	NA	7	NM_001162388	18632	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	0.100000	0.701493	
mm_101045.1	chr11	8624539	8624739	-	1	NA	NA	NA	39896	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.105000	0.676617	
mm_86916.1	chr10	23796961	23797161	+	1	NA	NA	NA	75	NM_183116	76306	Mm.294271	NM_183116	ENSMUSG00000037455	Slc18b1	1110021L09Rik	solute carrier family 18, subfamily B, member 1	protein-coding	0.110000	0.701493	
mm_140862.1	chr17	23745255	23745455	-	1	NA	NA	NA	474	NM_028416	73016	Mm.221319	NM_028416	ENSMUSG00000040680	Kremen2	2900054E04Rik|Krm2	kringle containing transmembrane protein 2	protein-coding	0.025000	0.626866	
mm_149961.1	chr19	28990284	28990484	+	1	NA	NA	NA	32	NM_025950	67072	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	0.110000	0.696517	
mm_84553.1	chr9	67633930	67634130	-	1	NA	NA	NA	-74327	NM_001081242	70549	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	0.175000	0.805970	
mm_41913.1	chr5	105591375	105591575	+	1	NA	NA	NA	72004	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.010000	0.368159	
mm_32480.1	chr4	107879735	107879935	+	1	NA	NA	NA	80	NM_001282737	17149	Mm.808	NM_001282737	ENSMUSG00000028609	Magoh	Mago-m|Mos2	mago homolog, exon junction complex core component	protein-coding	0.080000	0.537313	
mm_163910.1	chr14	32029129	32029329	+	1	NA	NA	NA	126	NM_030166	78754	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	0.010000	0.527363	74(TCTTATAAATGC,+,0.00)
mm_114909.1	chr13	94876553	94876753	+	1	NA	NA	NA	1026	NM_011021	18420	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	0.025000	0.482587	
mm_82861.1	chr9	31913181	31913381	-	1	NA	NA	NA	4	NM_013800	12023	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.110000	0.716418	
mm_75788.1	chr8	70095149	70095349	-	1	NA	NA	NA	7337	NR_106033	102465646		NR_106033	ENSMUSG00000099042	Mir7066	Gm27290|mmu-mir-7066	microRNA 7066	ncRNA	0.025000	0.537313	
mm_55721.1	chr6	73469416	73469616	-	1	NA	NA	NA	151	NM_025737	66740	Mm.440760	NM_025737	ENSMUSG00000056197	4931417E11Rik	-	RIKEN cDNA 4931417E11 gene	protein-coding	0.030000	0.472637	
mm_164361.1	chr16	22895236	22895436	+	1	NA	NA	NA	-950	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.030000	0.477612	
mm_155705.1	chrX	95711563	95711763	+	1	NA	NA	NA	-15	NM_001034907	547176	Mm.302708	NM_001034907	ENSMUSG00000035045	Zc3h12b	A130028J20Rik|CXorf32|Gm373	zinc finger CCCH-type containing 12B	protein-coding	0.110000	0.671642	
mm_135396.1	chr16	44558563	44558763	-	1	NA	NA	NA	207	NM_172506	117606	Mm.41561	NM_172506	ENSMUSG00000022687	Boc	4732455C11|mFLJ00376	biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein	protein-coding	0.080000	0.676617	
mm_98180.1	chr11	87760965	87761165	+	1	NA	NA	NA	524	NM_172449	207777	Mm.342019	NM_172449	ENSMUSG00000034156	Bzrap1	D230016K05|PRAX-1|Tspoap1|mKIAA0612	benzodiazepine receptor associated protein 1	protein-coding	0.015000	0.502488	-92(TCTTAAATAGGC,+,0.00)
mm_149715.1	chr19	21653395	21653595	+	1	NA	NA	NA	186	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.190000	0.800995	
mm_138315.1	chr17	34661557	34661757	+	1	NA	NA	NA	-8878	NM_031176	81877	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	0.015000	0.497512	
mm_134431.1	chr16	17927920	17928120	-	1	NA	NA	NA	199	NM_153150	13358	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0.125000	0.741294	
mm_133313.1	chr16	77642811	77643011	+	1	NA	NA	NA	-3362	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0.015000	0.422886	
mm_135503.1	chr16	46496871	46497071	-	1	NA	NA	NA	-4	NM_021497	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.175000	0.791045	
mm_97062.1	chr11	72742216	72742416	+	1	NA	NA	NA	52314	NM_009671	11736	Mm.10313	NM_009671	ENSMUSG00000020790	Ankfy1	Ankhzn|ZFYVE14|mKIAA1255	ankyrin repeat and FYVE domain containing 1	protein-coding	0.000000	0.338308	
mm_16768.1	chr2	9878494	9878694	-	1	NA	NA	NA	6	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.055000	0.547264	
mm_85963.1	chr9	112139333	112139533	-	1	NA	NA	NA	-20722	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.015000	0.412935	
mm_94274.1	chr11	3895167	3895367	+	1	NA	NA	NA	27	NM_173745	75219	Mm.32588	NM_173745	ENSMUSG00000047205	Dusp18	4930527G07Rik|AI430870|BB028064|DSP18|DUSP20|LMWDSP20	dual specificity phosphatase 18	protein-coding	0.050000	0.572139	
mm_146524.1	chr18	4353206	4353406	-	1	NA	NA	NA	-241	NR_040328	73915	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0.080000	0.646766	
mm_151493.1	chr19	58680730	58680930	+	1	NA	NA	NA	10465	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.015000	0.417910	
mm_86498.1	chr10	6788608	6788808	+	1	NA	NA	NA	132	NM_001039652	18390	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0.045000	0.577114	
mm_121181.1	chr14	103049171	103049371	+	1	NA	NA	NA	2259	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.467662	
mm_9921.1	chr1	189402666	189402866	-	1	NA	NA	NA	-493	NM_001281848	16526	Mm.33304	NM_010607	ENSMUSG00000037624	Kcnk2	A430027H14Rik|AI848635|TREK-1	potassium channel, subfamily K, member 2	protein-coding	0.015000	0.417910	-21(GTTTTAATAGGT,+,0.00),54(GAGCTTAAAAAC,-,0.00)
mm_45791.1	chr5	87535028	87535228	-	1	NA	NA	NA	3067	NM_019878	56362	Mm.23502	NM_019878	ENSMUSG00000029269	Sult1b1	ST1B1|St2b2	sulfotransferase family 1B, member 1	protein-coding	0.015000	0.412935	
mm_14779.1	chr2	145830793	145830993	+	1	NA	NA	NA	44777	NM_028724	74030	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.015000	0.447761	
mm_159220.1	chr2	127587051	127587251	-	1	NA	NA	NA	-275	NM_029963	77721	Mm.274601	NM_029963	ENSMUSG00000027374	Mrps5	1620401I16Rik|AI850294	mitochondrial ribosomal protein S5	protein-coding	0.050000	0.611940	
mm_25550.1	chr3	115974528	115974728	+	1	NA	NA	NA	-5274	NR_130332	100316705		NR_130332	ENSMUSG00000089261	Mir669n	mmu-mir-669n	microRNA 669n	ncRNA	0.015000	0.507463	
mm_14853.1	chr2	148672578	148672778	+	1	NA	NA	NA	37	NM_001110159	56488	Mm.34663	NM_019761	ENSMUSG00000036992	Nxt1	1110001N02Rik	NTF2-related export protein 1	protein-coding	0.120000	0.681592	
mm_28510.1	chr3	92577024	92577224	-	1	NA	NA	NA	-3389	NM_008412	16447	Mm.207365	NM_008412	ENSMUSG00000049128	Ivl	1110019C06Rik	involucrin	protein-coding	0.010000	0.457711	
mm_7358.1	chr1	106705421	106705621	-	1	NA	NA	NA	8769	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.005000	0.333333	
mm_146683.1	chr18	12860116	12860316	-	1	NA	NA	NA	2497	NM_001252493	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.005000	0.477612	-49(TCCTAGAAAAGC,-,0.00)
mm_125399.1	chr15	41447359	41447559	+	1	NA	NA	NA	-23	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.155000	0.771144	
mm_94127.1	chr10	128673779	128673979	-	1	NA	NA	NA	39	NM_173733	211389	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	0.100000	0.696517	
mm_92494.1	chr10	78311895	78312095	-	1	NA	NA	NA	28212	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.020000	0.577114	
mm_12226.1	chr2	68013536	68013736	+	1	NA	NA	NA	-91036	NM_020283	26877	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	0.005000	0.308458	
mm_72506.1	chr8	83899864	83900064	+	1	NA	NA	NA	-134	NM_181039	330814	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0.085000	0.686567	
mm_1017.1	chr1	58738563	58738763	+	1	NA	NA	NA	8111	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.000000	0.477612	
mm_136282.1	chr16	91199870	91200070	-	1	NA	NA	NA	-25580	NM_016967	50913	Mm.37289	NM_016967	ENSMUSG00000039830	Olig2	AI604895|Bhlhb1|Olg-2|Oligo2|RK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding	0.025000	0.512438	
mm_33984.1	chr4	137719119	137719319	+	1	NA	NA	NA	-5242	NR_138592	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.015000	0.557214	
mm_71826.1	chr8	68896529	68896729	+	1	NA	NA	NA	16074	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.020000	0.512438	
mm_147459.1	chr18	46597223	46597423	-	1	NA	NA	NA	212	NM_025698	66676	Mm.296043	NM_025698	ENSMUSG00000033184	Tmed7	3930401E15Rik|5830493P14Rik|AU044611|AW545765|TRAM	transmembrane p24 trafficking protein 7	protein-coding	0.185000	0.810945	
mm_143541.1	chr17	74016831	74017031	-	1	NA	NA	NA	30985	NM_053188	94224	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.000000	0.402985	
mm_58085.1	chr6	136946946	136947146	-	1	NA	NA	NA	-5147	NM_001301309	11857	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	0.025000	0.592040	-34(CACTATAAAAGG,-,0.00)
mm_169222.1	chr13	66802473	66802673	-	1	NA	NA	NA	102777	NM_026219	67530	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	0.010000	0.512438	
mm_68107.1	chr7	102019404	102019604	-	1	NA	NA	NA	-1349	NM_010531	16068	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.005000	0.482587	
mm_145422.1	chr18	58556108	58556308	+	1	NA	NA	NA	-32	NM_001081072	225579	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0.025000	0.542289	
mm_63313.1	chr7	126863244	126863444	+	1	NA	NA	NA	1372	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	0.005000	0.502488	
mm_35674.1	chr4	43584290	43584490	-	1	NA	NA	NA	104	NM_001099314	100039672	Mm.415110	NM_001099314	ENSMUSG00000078719	Msmp	OTTMUSG00000007017|Psmp	microseminoprotein, prostate associated	protein-coding	0.010000	0.562189	-33(CACTTTATAAAC,-,0.00)
mm_153566.1	chr19	42562982	42563182	-	1	NA	NA	NA	44277	NM_177464	52013	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	0.015000	0.462687	88(TGGTTTAAAAAG,-,0.00)
mm_170597.1	chr19	5802265	5802465	-	1	NA	NA	NA	307	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.010000	0.353234	12(AGTTCTAAAAGG,-,0.00)
mm_51712.1	chr6	86784972	86785172	+	1	NA	NA	NA	8512	NM_013471	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.020000	0.462687	
mm_117127.1	chr13	60905027	60905227	-	1	NA	NA	NA	-280	NM_026429	116913	Mm.443229	NM_026429	ENSMUSG00000062705	Tpbpb	1600012N09Rik	trophoblast specific protein beta	protein-coding	0.005000	0.412935	
mm_115602.1	chr13	11898841	11899041	-	1	NA	NA	NA	208004	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.000000	0.437811	
mm_60374.1	chr7	44467901	44468101	+	1	NA	NA	NA	21	NM_001205070	66124	Mm.358691	NM_025368	ENSMUSG00000038695	Josd2	1110007C05Rik	Josephin domain containing 2	protein-coding	0.090000	0.626866	
mm_29713.1	chr3	123690671	123690871	-	1	NA	NA	NA	81	NR_121616	83398	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	0.070000	0.676617	
mm_108401.1	chr12	81183784	81183984	+	1	NA	NA	NA	17733	NR_037227	100526532		NR_037227	ENSMUSG00000092673	Mir3067	mir-3067|mmu-mir-3067	microRNA 3067	ncRNA	0.030000	0.577114	
mm_141663.1	chr17	33781134	33781334	-	1	NA	NA	NA	341	NM_020581	57875	Mm.196189	NM_020581	ENSMUSG00000002289	Angptl4	Arp4|Bk89|Fiaf|Hfarp|Ng27|Pgar|Pgarg|Pp1158	angiopoietin-like 4	protein-coding	0.090000	0.666667	
mm_106224.1	chr11	117114859	117115059	-	1	NA	NA	NA	-213	NR_029459	74136	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.085000	0.651741	
mm_144538.1	chr18	25754284	25754484	+	1	NA	NA	NA	-401	NM_001174074	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.115000	0.656716	-32(GGCTATAAATAG,-,0.00)
mm_95393.1	chr11	49258946	49259146	+	1	NA	NA	NA	8494	NM_001110150	17308	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.005000	0.402985	
mm_123034.1	chr14	55524893	55525093	-	1	NA	NA	NA	-12	NM_001271917	18185	Mm.20422	NM_008736	ENSMUSG00000040632	Nrl	D14H14S46E	neural retina leucine zipper gene	protein-coding	0.035000	0.552239	-37(AGCTCTAAGAGG,-,0.00),-36(GCTCTAAGAGGC,+,0.00)
mm_52070.1	chr6	97807557	97807757	+	1	NA	NA	NA	599	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.030000	0.621891	
mm_158069.1	chrX	101263894	101264094	-	1	NA	NA	NA	-2	NM_001317221	245536	Mm.212463	NM_001033362	ENSMUSG00000090141	Gm614	-	predicted gene 614	protein-coding	0.000000	0.512438	
mm_17923.1	chr2	35457756	35457956	-	1	NA	NA	NA	3593	NM_001308299	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.010000	0.417910	
mm_74428.1	chr8	3694075	3694275	-	1	NA	NA	NA	-1	NM_001253743	14128	Mm.1233	NM_013517	ENSMUSG00000005540	Fcer2a	CD23|Fce2|Fcer2|Ly-42	Fc receptor, IgE, low affinity II, alpha polypeptide	protein-coding	0.005000	0.457711	-35(GTCTATAAAAAT,-,0.00)
mm_84393.1	chr9	65529705	65529905	-	1	NA	NA	NA	50282	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.025000	0.597015	
mm_41753.1	chr5	102845214	102845414	+	1	NA	NA	NA	307	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.055000	0.631841	
mm_139092.1	chr17	46858135	46858335	+	1	NA	NA	NA	-26822	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.015000	0.487562	
mm_165498.1	chr2	166825033	166825233	-	1	NA	NA	NA	19552	NM_001085495	99371	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.015000	0.512438	
mm_99212.1	chr11	101023201	101023401	+	1	NA	NA	NA	-7039	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.010000	0.328358	
mm_7914.1	chr1	133719014	133719214	-	1	NA	NA	NA	7531	NR_105868	102466206		NR_105868	ENSMUSG00000098606	Mir6903	Gm27797|mmu-mir-6903	microRNA 6903	ncRNA	0.010000	0.373134	
mm_95740.1	chr11	54691433	54691633	+	1	NA	NA	NA	95387	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.020000	0.532338	
mm_165541.1	chr2	181385805	181386005	+	1	NA	NA	NA	1655	NR_045164	329584	Mm.386906	NR_045164	ENSMUSG00000085028	Slc2a4rg-ps	C430010C01|Gm14462|OTTMUSG00000016710	Slc2a4 regulator, pseudogene	pseudo	0.000000	0.552239	
mm_6085.1	chr1	63107930	63108130	-	1	NA	NA	NA	6237	NM_001081436	227195	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584|OTTMUSG00000002594	INO80 complex subunit D	protein-coding	0.005000	0.462687	
mm_21242.1	chr2	156172908	156173108	-	1	NA	NA	NA	6572	NM_001291115	170791	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.025000	0.348259	
mm_103537.1	chr11	77489885	77490085	-	1	NA	NA	NA	-307	NM_172945	268445	Mm.39296	NM_172945	ENSMUSG00000037907	Ankrd13b	AW124583|B930093C12Rik	ankyrin repeat domain 13b	protein-coding	0.140000	0.771144	
mm_123066.1	chr14	55672101	55672301	-	1	NA	NA	NA	-34	NM_177992	105446	Mm.390685	NM_177992	ENSMUSG00000002326	Gmpr2	1810008P16Rik|5730544D12Rik|AA959850|GMPR 2	guanosine monophosphate reductase 2	protein-coding	0.050000	0.537313	
mm_32057.1	chr4	97777340	97777540	+	1	NA	NA	NA	-186	NM_001122953	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.155000	0.815920	
mm_116785.1	chr13	53369677	53369877	-	1	NA	NA	NA	7584	NM_009269	268656	Mm.240336	NM_009269	ENSMUSG00000021468	Sptlc1	AW552086|C77762|E030036H05|Lcb1	serine palmitoyltransferase, long chain base subunit 1	protein-coding	0.020000	0.338308	
mm_1969.1	chr1	86503534	86503734	+	1	NA	NA	NA	-23102	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.020000	0.572139	-7(GGCTAGTAAAGG,-,0.00)
mm_77667.1	chr8	124751742	124751942	-	1	NA	NA	NA	-33	NM_001081120	69627	Mm.271600	NM_001081120	ENSMUSG00000043068	Fam89a	2310031A18Rik	family with sequence similarity 89, member A	protein-coding	0.130000	0.746269	
mm_95653.1	chr11	53724555	53724755	+	1	NA	NA	NA	3861	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.005000	0.452736	
mm_74975.1	chr8	27141356	27141556	-	1	NA	NA	NA	-1454	NR_045840	71082	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.005000	0.323383	
mm_185.1	chr1	15286832	15287032	+	1	NA	NA	NA	-25520	NM_001098528	98741	Mm.156081	NM_001033195	ENSMUSG00000092083	Kcnb2	9630047L19Rik|BB130875|Kv2.2	potassium voltage gated channel, Shab-related subfamily, member 2	protein-coding	0.140000	0.776119	
mm_153421.1	chr19	40665825	40666025	-	1	NA	NA	NA	6155	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.015000	0.487562	
mm_114900.1	chr13	94520667	94520867	+	1	NA	NA	NA	161807	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.010000	0.487562	
mm_95106.1	chr11	34054200	34054400	+	1	NA	NA	NA	7099	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.015000	0.512438	
mm_88673.1	chr10	80018005	80018205	+	1	NA	NA	NA	1190	NM_001347074	70719	Mm.243954	NM_027521	ENSMUSG00000035697	Hmha1	6330406L22Rik|AW539505|Ha-1	histocompatibility (minor) HA-1	protein-coding	0.025000	0.592040	
mm_81367.1	chr9	108795883	108796083	+	1	NA	NA	NA	-11	NM_029634	76500	Mm.276336	NM_029634	ENSMUSG00000032599	Ip6k2	1500005N04Rik|AW050208|Ihpk2	inositol hexaphosphate kinase 2	protein-coding	0.025000	0.557214	
mm_78348.1	chr9	25306089	25306289	+	1	NA	NA	NA	53750	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.025000	0.368159	
mm_4178.1	chr1	171126002	171126202	+	1	NA	NA	NA	4441	NM_001081275	75472	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.025000	0.517413	
mm_165046.1	chr19	40187107	40187307	-	1	NA	NA	NA	79	NM_145499	226105	Mm.29119	NM_145499	ENSMUSG00000060613	Cyp2c70	-	cytochrome P450, family 2, subfamily c, polypeptide 70	protein-coding	0.005000	0.417910	
mm_67520.1	chr7	80923171	80923371	-	1	NA	NA	NA	-18209	NM_001291280	68039	Mm.22246	NM_026523	ENSMUSG00000025723	Nmb	3110023K12Rik	neuromedin B	protein-coding	0.000000	0.412935	
mm_129066.1	chr15	75633737	75633937	-	1	NA	NA	NA	17153	NM_011759	22701	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0.010000	0.512438	
mm_22055.1	chr2	168571108	168571308	-	1	NA	NA	NA	19157	NM_001291178	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.070000	0.616915	
mm_40937.1	chr5	76657659	76657859	+	1	NA	NA	NA	66045	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.155000	0.781095	
mm_28078.1	chr3	84480338	84480538	-	1	NA	NA	NA	1	NM_001033301	229474	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0.130000	0.781095	
mm_142742.1	chr17	48409494	48409694	-	1	NA	NA	NA	226	NM_001110832	18044	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	0.105000	0.696517	
mm_129268.1	chr15	76925298	76925498	-	1	NA	NA	NA	50	NM_172817	239546	Mm.183650	NM_172817	ENSMUSG00000054967	Zfp647	6030449J21|Es492|Znf250	zinc finger protein 647	protein-coding	0.095000	0.691542	
mm_163040.1	chr11	53350981	53351181	+	1	NA	NA	NA	314	NM_033565	93736	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.130000	0.746269	
mm_168643.1	chr1	185076634	185076834	-	1	NA	NA	NA	-77185	NM_145515	226778	Mm.7445	NM_145515	ENSMUSG00000026620	Mark1	AW491150|B930025N23Rik|Emk3|Par-1c|mKIAA1477|mPar-1c	MAP/microtubule affinity regulating kinase 1	protein-coding	0.040000	0.522388	-28(TTCTATAAAAAC,-,0.00)
mm_116152.1	chr13	29985908	29986108	-	1	NA	NA	NA	55	NM_010093	13557	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.090000	0.606965	
mm_163922.1	chr14	44988690	44988890	-	1	NA	NA	NA	679	NM_008964	19217	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.035000	0.601990	
mm_63199.1	chr7	125634303	125634503	+	1	NA	NA	NA	30974	NM_021887	60504	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.015000	0.442786	-31(GCCCATTAAAAA,-,0.00)
mm_139423.1	chr17	53479407	53479607	+	1	NA	NA	NA	273	NM_025887	271457	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0.160000	0.776119	
mm_139469.1	chr17	55970368	55970568	+	1	NA	NA	NA	-14	NM_001159523	20420	Mm.20908	NM_009168	ENSMUSG00000039154	Shd	AI413439	src homology 2 domain-containing transforming protein D	protein-coding	0.125000	0.731343	
mm_108179.1	chr12	76417468	76417668	+	1	NA	NA	NA	-31	NM_001163103	210762	Mm.292354	NM_001163103	ENSMUSG00000052221	Ppp1r36	Gm70	protein phosphatase 1, regulatory subunit 36	protein-coding	0.110000	0.706468	
mm_81453.1	chr9	109832679	109832879	+	1	NA	NA	NA	-15	NM_018757	54369	Mm.12951	NM_018757	ENSMUSG00000032478	Nme6	nm23-M6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding	0.055000	0.631841	
mm_27407.1	chr3	51340449	51340649	-	1	NA	NA	NA	95	NM_001291059	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.160000	0.781095	
mm_147722.1	chr18	60848781	60848981	-	1	NA	NA	NA	83	NM_011552	21453	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0.110000	0.676617	
mm_170715.1	chr2	144368898	144369098	+	1	NA	NA	NA	15	NM_001164813	100048644	Mm.227925	NM_001164813	ENSMUSG00000098387	Pet117	Gm20571	PET117 homolog	protein-coding	0.155000	0.731343	
mm_13525.1	chr2	110021826	110022026	+	1	NA	NA	NA	4109	NM_026613	68201	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	0.035000	0.492537	
mm_102305.1	chr11	55608114	55608314	-	1	NA	NA	NA	-16	NM_020492	14654	Mm.89320	NM_020492	ENSMUSG00000000263	Glra1	nmf11|oscillator|ot|spasmodic|spd	glycine receptor, alpha 1 subunit	protein-coding	0.045000	0.631841	
mm_14057.1	chr2	122630538	122630738	+	1	NA	NA	NA	13	NM_001033256	214616	Mm.271306	NM_001033256		Spata5l1	AV141009|C130039A10Rik	spermatogenesis associated 5-like 1	protein-coding	0.080000	0.616915	
mm_106593.1	chr11	120730409	120730609	-	1	NA	NA	NA	1512	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.015000	0.562189	
mm_86668.1	chr10	18022867	18023067	+	1	NA	NA	NA	285	NM_028440	73112	Mm.276041	NM_028440	ENSMUSG00000078453	Abracl	1700028I04Rik|3110003A17Rik	ABRA C-terminal like	protein-coding	0.080000	0.671642	
mm_130299.1	chr15	97019433	97019633	-	1	NA	NA	NA	36423	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.025000	0.477612	
mm_54143.1	chr6	22306770	22306970	-	1	NA	NA	NA	18643	NM_053116	93735	Mm.137403	NM_053116	ENSMUSG00000029671	Wnt16	E130309I19Rik	wingless-type MMTV integration site family, member 16	protein-coding	0.000000	0.268657	
mm_26147.1	chr3	138066595	138066795	+	1	NA	NA	NA	693	NR_037975	329763	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA	0.040000	0.502488	-96(GGCTATAAATGA,-,0.00)
mm_14646.1	chr2	136910061	136910261	+	1	NA	NA	NA	10810	NM_001038641	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.000000	0.373134	
mm_31305.1	chr4	46040879	46041079	+	1	NA	NA	NA	1757	NM_021883	21916	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0.010000	0.547264	
mm_24023.1	chr3	87527223	87527423	+	1	NA	NA	NA	1745	NM_012051	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.035000	0.497512	
mm_161888.1	chr18	37814918	37815118	+	1	NA	NA	NA	-61	NM_033582	93707	Mm.247203	NM_033582	ENSMUSG00000023036	Pcdhgc4	-	protocadherin gamma subfamily C, 4	protein-coding	0.025000	0.507463	-87(GCTTTAATACGA,+,0.00)
mm_54414.1	chr6	32588153	32588353	-	1	NA	NA	NA	-61	NM_175750	243743	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0.105000	0.751244	
mm_121337.1	chr14	115044399	115044599	+	1	NA	NA	NA	72	NR_029816	751549		NR_029816	ENSMUSG00000076062	Mir92-1	Mirn92-1|mir-92a-1	microRNA 92-1	ncRNA	0.020000	0.432836	
mm_99237.1	chr11	101071891	101072091	+	1	NA	NA	NA	1897	NM_013792	27419	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.025000	0.587065	
mm_91315.1	chr10	24927352	24927552	-	1	NA	NA	NA	18	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.030000	0.542289	
mm_88871.1	chr10	81069942	81070142	+	1	NA	NA	NA	-41	NM_022653	50492	Mm.26995	NM_022653	ENSMUSG00000004929	Thop1	AI131655|AI327041|EP24.15	thimet oligopeptidase 1	protein-coding	0.125000	0.661692	
mm_74415.1	chr8	3624934	3625134	-	1	NA	NA	NA	15	NM_001129804	18545	Mm.440882	NM_008790	ENSMUSG00000004630	Pcp2	L7|Pcp-2	Purkinje cell protein 2 (L7)	protein-coding	0.010000	0.572139	
mm_70972.1	chr8	27085762	27085962	+	1	NA	NA	NA	21	NM_054044	78560	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	0.135000	0.800995	
mm_102758.1	chr11	67500887	67501087	-	1	NA	NA	NA	-32011	NM_008088	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.005000	0.477612	-30(CCTTTTATAGCT,+,0.00)
mm_27463.1	chr3	52179909	52180109	-	1	NA	NA	NA	-75003	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.030000	0.646766	
mm_74141.1	chr8	123235011	123235211	+	1	NA	NA	NA	20	NR_045849	71186	Mm.449984	NR_045849	ENSMUSG00000097637	4933417D19Rik	-	RIKEN cDNA 4933417D19 gene	ncRNA	0.035000	0.562189	
mm_158326.1	chrX	133960641	133960841	-	1	NA	NA	NA	21071	NM_001290718	27359	Mm.38674	NM_013757	ENSMUSG00000031255	Sytl4	Gph|Slp4	synaptotagmin-like 4	protein-coding	0.005000	0.427861	
mm_61073.1	chr7	51621594	51621794	+	1	NA	NA	NA	-136	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.020000	0.517413	
mm_149000.1	chr19	8664289	8664489	+	1	NA	NA	NA	384	NM_001112697	12669	Mm.240607	NM_007698	ENSMUSG00000032773	Chrm1	Chrm-1|M1|M1R	cholinergic receptor, muscarinic 1, CNS	protein-coding	0.030000	0.661692	
mm_146391.1	chr18	82767203	82767403	+	1	NA	NA	NA	-8264	NR_045389	76961	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.035000	0.502488	
mm_39995.1	chr5	32610264	32610464	+	1	NA	NA	NA	-807	NM_001205133	22612	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	0.015000	0.417910	
mm_109892.1	chr12	7380243	7380443	-	1	NA	NA	NA	-13	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA	0.010000	0.452736	
mm_64402.1	chr7	142507638	142507838	+	1	NA	NA	NA	-967	NR_033261	677289	Mm.350054	NR_033261	ENSMUSG00000043795	Prr33	ENSMUSG00000043795|Gm14492|OTTMUSG00000016823	proline rich 33	ncRNA	0.045000	0.631841	
mm_29752.1	chr3	127063631	127063831	-	1	NA	NA	NA	-65279	NM_178655	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.010000	0.497512	
mm_24051.1	chr3	87906469	87906669	+	1	NA	NA	NA	248	NM_008231	15191	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0.180000	0.776119	
mm_56271.1	chr6	91023938	91024138	-	1	NA	NA	NA	92788	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.015000	0.457711	-100(ATTTTTAGAGCC,+,0.00)
mm_104055.1	chr11	86485156	86485356	-	1	NA	NA	NA	599	NM_029788	76892	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0.050000	0.532338	
mm_14103.1	chr2	125256373	125256573	+	1	NA	NA	NA	8958	NM_023595	110074	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0.015000	0.452736	-69(TGGTTTAAAAGG,-,0.00)
mm_16385.1	chr2	178455309	178455509	+	1	NA	NA	NA	24894	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.015000	0.532338	
mm_62870.1	chr7	114743624	114743824	+	1	NA	NA	NA	-2042	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	0.000000	0.507463	
mm_130223.1	chr15	96204610	96204810	-	1	NA	NA	NA	-6736	NR_040423	70040	Mm.437832	NR_040423		2610037D02Rik	AU024679	RIKEN cDNA 2610037D02 gene	ncRNA	0.015000	0.497512	
mm_65413.1	chr7	25245347	25245547	-	1	NA	NA	NA	5311	NM_010155	13875	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.040000	0.611940	
mm_91560.1	chr10	39986537	39986737	-	1	NA	NA	NA	9	NM_001113385	215928	Mm.31744	NM_001001489	ENSMUSG00000038528	Mfsd4b5	Naglt1c	major facilitator superfamily domain containing 4B5	protein-coding	0.025000	0.577114	
mm_68199.1	chr7	104380057	104380257	-	1	NA	NA	NA	-21511	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.005000	0.447761	
mm_85758.1	chr9	108649467	108649667	-	1	NA	NA	NA	-187	NM_011790	23807	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.065000	0.482587	
mm_160842.1	chr11	50158421	50158621	+	1	NA	NA	NA	-16330	NM_026543	68067	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	0.015000	0.547264	
mm_27510.1	chr3	55792327	55792527	-	1	NA	NA	NA	9917	NM_010750	17116	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.010000	0.537313	
mm_84500.1	chr9	66918259	66918459	-	1	NA	NA	NA	1346	NM_173413	235442	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.000000	0.333333	84(GCTTTTAAACCT,+,0.00)
mm_91491.1	chr10	37135585	37135785	-	1	NA	NA	NA	3241	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.000000	0.383085	
mm_140714.1	chr17	15240651	15240851	-	1	NA	NA	NA	32	NR_046164	328747	Mm.256835	NR_046164	ENSMUSG00000097624	Gm5091	C330048F19	predicted gene 5091	ncRNA	0.030000	0.601990	
mm_141513.1	chr17	31678088	31678288	-	1	NA	NA	NA	257	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.025000	0.577114	
mm_165815.1	chr3	145988591	145988791	+	1	NA	NA	NA	821	NM_001166064	214804	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	0.110000	0.706468	
mm_137094.1	chr17	21535481	21535681	+	1	NA	NA	NA	42	NM_144515	22710	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	0.020000	0.562189	
mm_66533.1	chr7	45136321	45136521	-	1	NA	NA	NA	11	NM_013520	14256	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	0.050000	0.621891	
mm_144265.1	chr18	11053214	11053414	+	1	NA	NA	NA	-747	NR_105023	68434	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0.055000	0.597015	
mm_1295.1	chr1	64532515	64532715	+	1	NA	NA	NA	-189	NM_133828	12912	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.075000	0.646766	
mm_153290.1	chr19	37337749	37337949	-	1	NA	NA	NA	-7236	NM_031156	15925	Mm.28366	NM_031156	ENSMUSG00000056999	Ide	1300012G03Rik|4833415K22Rik|AA675336|AI507533	insulin degrading enzyme	protein-coding	0.005000	0.432836	
mm_167480.1	chr8	129233911	129234111	-	1	NA	NA	NA	35	NM_153780	72139	Mm.426514	NM_153780	ENSMUSG00000071302	2610044O15Rik8	2610044O15Rik	RIKEN cDNA 2610044O15 gene	protein-coding	0.030000	0.517413	
mm_31679.1	chr4	62294900	62295100	+	1	NA	NA	NA	3453	NM_001290518	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.005000	0.497512	
mm_108111.1	chr12	75308501	75308701	+	1	NA	NA	NA	288	NM_023275	80837	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	0.025000	0.542289	
mm_59253.1	chr7	24862101	24862301	+	1	NA	NA	NA	7490	NM_182785	232973	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	0.030000	0.462687	
mm_69432.1	chr7	132813685	132813885	-	1	NA	NA	NA	-589	NM_212473	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.135000	0.691542	
mm_157728.1	chrX	70364982	70365182	-	1	NA	NA	NA	3	NM_010498	15931	Mm.233083	NM_010498	ENSMUSG00000035847	Ids	AW214631	iduronate 2-sulfatase	protein-coding	0.100000	0.676617	
mm_145327.1	chr18	55057469	55057669	+	1	NA	NA	NA	-67389	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.005000	0.562189	
mm_161927.1	chr18	77307617	77307817	+	1	NA	NA	NA	25759	NM_172834	240411	Mm.380247	NM_172834	ENSMUSG00000032818	Loxhd1	1700096C21Rik|4932417K07|sba	lipoxygenase homology domains 1	protein-coding	0.040000	0.552239	
mm_168413.1	chr11	31982508	31982708	-	1	NA	NA	NA	16975	NM_026262	67592	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	0.010000	0.487562	-38(CCTTTTATAAAG,+,0.00)
mm_53574.1	chr6	137410636	137410836	+	1	NA	NA	NA	15	NM_001164403	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.005000	0.427861	-73(CTATTAATAGTC,+,0.00)
mm_41271.1	chr5	89108639	89108839	+	1	NA	NA	NA	221479	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.000000	0.378109	
mm_70090.1	chr7	142655986	142656186	-	1	NA	NA	NA	-1090	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.010000	0.527363	
mm_25459.1	chr3	108534044	108534244	+	1	NA	NA	NA	2378	NM_001033304	229722	Mm.316890	NM_001033304	ENSMUSG00000040412	5330417C22Rik	BB183350	RIKEN cDNA 5330417C22 gene	protein-coding	0.015000	0.432836	
mm_76741.1	chr8	95202712	95202912	-	1	NA	NA	NA	-60272	NM_001145831	16582	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.030000	0.611940	
mm_5095.1	chr1	4807633	4807833	-	1	NA	NA	NA	-160	NM_008866	18777	Mm.299955	NM_008866	ENSMUSG00000025903	Lypla1	Pla1a	lysophospholipase 1	protein-coding	0.160000	0.746269	
mm_122945.1	chr14	54965719	54965919	-	1	NA	NA	NA	788	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.025000	0.537313	
mm_54114.1	chr6	17655130	17655330	-	1	NA	NA	NA	18132	NM_007604	12343	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.005000	0.512438	
mm_89571.1	chr10	95514866	95515066	+	1	NA	NA	NA	-196	NM_080560	93765	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.120000	0.756219	
mm_76320.1	chr8	84687762	84687962	-	1	NA	NA	NA	0	NM_025788	66830	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	0.125000	0.731343	
mm_1374.1	chr1	66471970	66472170	+	1	NA	NA	NA	3623	NM_175510	329178	Mm.44798	NM_175510	ENSMUSG00000055567	Unc80	C030018G13Rik|C230061B10Rik|UNC-80	unc-80, NALCN activator	protein-coding	0.010000	0.507463	
mm_53175.1	chr6	125349682	125349882	+	1	NA	NA	NA	59	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.045000	0.601990	
mm_160251.1	chr7	106975356	106975556	-	1	NA	NA	NA	-5	NM_147035	259037	Mm.223420	NM_147035	ENSMUSG00000045013	Olfr711	MOR103-4	olfactory receptor 711	protein-coding	0.005000	0.422886	
mm_48476.1	chr5	140995734	140995934	-	1	NA	NA	NA	4762	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.010000	0.462687	
mm_10880.1	chr2	25242303	25242503	+	1	NA	NA	NA	-526	NM_176834	68846	Mm.24777	NM_176834	ENSMUSG00000044628	Rnf208	1110061N23Rik	ring finger protein 208	protein-coding	0.135000	0.726368	
mm_45855.1	chr5	87785214	87785414	-	1	NA	NA	NA	10864	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.005000	0.233831	-71(TTTTTTATAGCC,+,0.00)
mm_126539.1	chr15	82022765	82022965	+	1	NA	NA	NA	6496	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.035000	0.542289	
mm_160110.1	chr7	25395887	25396087	-	1	NA	NA	NA	0	NM_010719	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.070000	0.631841	
mm_140993.1	chr17	24874342	24874542	-	1	NA	NA	NA	-4328	NM_008340	16005	Mm.3135	NM_008340	ENSMUSG00000046070	Igfals	ALS|Albs|mKIAA4111	insulin-like growth factor binding protein, acid labile subunit	protein-coding	0.005000	0.522388	
mm_65941.1	chr7	30394470	30394670	-	1	NA	NA	NA	-19218	NM_011662	22177	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0.030000	0.517413	
mm_148773.1	chr19	6105682	6105882	+	1	NA	NA	NA	-16	NM_001009546	381204	Mm.359041	NM_001009546	ENSMUSG00000054999	Naaladl1	Gm964|Naaladasel	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding	0.015000	0.547264	
mm_146397.1	chr18	82910751	82910951	+	1	NA	NA	NA	-28	NM_183033	329003	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.200000	0.830846	
mm_117020.1	chr13	58128455	58128655	-	1	NA	NA	NA	1	NM_029872	77134	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	0.165000	0.781095	
mm_156662.1	chrX	157711471	157711671	+	1	NA	NA	NA	12598	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.010000	0.348259	
mm_70182.1	chr7	143766859	143767059	-	1	NA	NA	NA	34	NM_203492	381974	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	0.015000	0.547264	
mm_171057.1	chr3	105955858	105956058	-	1	NA	NA	NA	-3540	NM_027432	70465	Mm.5110	NM_027432	ENSMUSG00000000561	Wdr77	2610003I18Rik|2610312E17Rik|C79984|p44/MEP50	WD repeat domain 77	protein-coding	0.010000	0.462687	
mm_150865.1	chr19	45018034	45018234	+	1	NA	NA	NA	-1	NM_001130526	226154	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.140000	0.825871	
mm_60121.1	chr7	36234121	36234321	+	1	NA	NA	NA	-431232	NM_177739	668501	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	0.020000	0.517413	
mm_93791.1	chr10	120781929	120782129	-	1	NA	NA	NA	16297	NR_038003	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.005000	0.407960	
mm_52002.1	chr6	92827579	92827779	+	1	NA	NA	NA	73762	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	0.015000	0.462687	
mm_95447.1	chr11	50291027	50291227	+	1	NA	NA	NA	1209	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.025000	0.402985	86(TGCCTTTTAAGC,-,0.00),88(CCTTTTAAGCAA,+,0.00)
mm_50804.1	chr6	54272730	54272930	+	1	NA	NA	NA	8	NM_023543	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.010000	0.587065	
mm_159316.1	chr3	10351213	10351413	-	1	NA	NA	NA	4	NM_001331015	66361	Mm.371617	NM_025512	ENSMUSG00000039795	Zfand1	2310008M20Rik|AW048890	zinc finger, AN1-type domain 1	protein-coding	0.080000	0.696517	
mm_60286.1	chr7	43979028	43979228	+	1	NA	NA	NA	3067	NM_010116	13648	Mm.440884	NM_010116	ENSMUSG00000059042	Klk1b9	EGF-BP C|Egfbp-3|Egfbp3|KAL|Klk9|kallikrein|mGk-9	kallikrein 1-related peptidase b9	protein-coding	0.010000	0.547264	
mm_161403.1	chr14	121592368	121592568	-	1	NA	NA	NA	-87214	NM_053079	56643	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	0.015000	0.482587	
mm_7734.1	chr1	130779916	130780116	-	1	NA	NA	NA	-20886	NM_001170632	64435	Mm.31821	NM_144960	ENSMUSG00000026415	Fcamr	-	Fc receptor, IgA, IgM, high affinity	protein-coding	0.010000	0.452736	12(GCTTTTAGAGTT,+,0.00)
mm_165976.1	chr4	102507000	102507200	+	1	NA	NA	NA	-62960	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.030000	0.472637	-33(AGGTATAAAAAG,-,0.00)
mm_79899.1	chr9	65360953	65361153	+	1	NA	NA	NA	-7	NM_001111145	208080	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	0.025000	0.398010	
mm_55828.1	chr6	83121947	83122147	-	1	NA	NA	NA	-586	NM_001083922	22377	Mm.1109	NM_016757	ENSMUSG00000030035	Wbp1	AI255152	WW domain binding protein 1	protein-coding	0.115000	0.771144	
mm_143865.1	chr17	84186580	84186780	-	1	NA	NA	NA	1267	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.090000	0.651741	
mm_137833.1	chr17	30845610	30845810	+	1	NA	NA	NA	-56157	NM_021332	14652	Mm.390969	NM_021332	ENSMUSG00000024027	Glp1r	GLP-1R|GLP1Rc	glucagon-like peptide 1 receptor	protein-coding	0.030000	0.388060	
mm_5005.1	chr1	191977323	191977523	+	1	NA	NA	NA	53	NM_023727	74023	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	0.005000	0.562189	
mm_162943.1	chr10	128805241	128805441	-	1	NA	NA	NA	-335	NM_028873	74330	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	0.090000	0.646766	-66(ACCCCTTAAAGG,-,0.00),-65(CCCCTTAAAGGG,+,0.00),-65(CCCCTTAAAGGG,-,0.00),-64(CCCTTAAAGGGC,+,0.00),-63(CCTTAAAGGGCC,+,0.00)
mm_97566.1	chr11	78936395	78936595	+	1	NA	NA	NA	11204	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.010000	0.532338	
mm_145028.1	chr18	39174793	39174993	+	1	NA	NA	NA	181748	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.010000	0.487562	
mm_170100.1	chr17	39843141	39843341	+	1	NA	NA	NA	244	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.090000	0.641791	
mm_17611.1	chr2	30924834	30925034	-	1	NA	NA	NA	-21637	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.000000	0.502488	
mm_4359.1	chr1	171917780	171917980	+	1	NA	NA	NA	343	NM_030710	30925	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	0.035000	0.522388	
mm_90778.1	chr10	6979967	6980167	-	1	NA	NA	NA	214	NM_001347225	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.020000	0.462687	
mm_8297.1	chr1	143702690	143702890	-	1	NA	NA	NA	103	NM_145991	214498	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	0.140000	0.746269	-56(CCTTATATAGCG,+,0.00)
mm_154916.1	chrX	21714985	21715185	+	1	NA	NA	NA	185	NM_020049	56774	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	0.020000	0.582090	-76(CTCCATAAATGG,-,0.00),-74(CCATAAATGGTC,+,0.00)
mm_123821.1	chr14	70599760	70599960	-	1	NA	NA	NA	-25	NM_194345	239170	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	0.115000	0.786070	
mm_21855.1	chr2	165879640	165879840	-	1	NA	NA	NA	-1303	NM_001291158	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.015000	0.422886	
mm_93105.1	chr10	91045834	91046034	-	1	NA	NA	NA	36809	NM_001042558	11783	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	0.005000	0.368159	
mm_140892.1	chr17	23998002	23998202	-	1	NA	NA	NA	-2	NM_133731	70835	Mm.157351	NM_133731	ENSMUSG00000045027	Prss22	4733401N09Rik|BSSP-4|SP001LA	protease, serine 22	protein-coding	0.010000	0.592040	
mm_145817.1	chr18	65430925	65431125	+	1	NA	NA	NA	28	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.110000	0.721393	
mm_109547.1	chr12	111698537	111698737	+	1	NA	NA	NA	14316	NM_001324481	70369	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.010000	0.567164	
mm_116904.1	chr13	55432162	55432362	-	1	NA	NA	NA	-5458	NM_021489	58992	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	0.010000	0.378109	
mm_13993.1	chr2	121867021	121867221	+	1	NA	NA	NA	151	NM_001205369	319996	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	0.140000	0.800995	
mm_45381.1	chr5	66131884	66132084	-	1	NA	NA	NA	18994	NM_001291226	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.005000	0.442786	
mm_87991.1	chr10	64686370	64686570	+	1	NA	NA	NA	-596215	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.000000	0.393035	
mm_19682.1	chr2	103454603	103454803	-	1	NA	NA	NA	30450	NM_009804	12359	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0.065000	0.547264	
mm_74143.1	chr8	123254205	123254405	+	1	NA	NA	NA	-83	NM_028200	72325	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	0.105000	0.716418	
mm_49472.1	chr6	29526024	29526224	+	1	NA	NA	NA	-501	NM_001311083	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.035000	0.492537	
mm_167955.1	chrX	140998696	140998896	+	1	NA	NA	NA	-42085	NM_001164177	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	0.000000	0.606965	
mm_23045.1	chr3	34826526	34826726	+	1	NA	NA	NA	54551	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA	0.010000	0.477612	
mm_17179.1	chr2	25363405	25363605	-	1	NA	NA	NA	2121	NM_001033293	227620	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	0.025000	0.616915	
mm_78458.1	chr9	32372392	32372592	+	1	NA	NA	NA	74	NM_019659	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.015000	0.477612	
mm_72250.1	chr8	75093521	75093721	+	1	NA	NA	NA	3	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.100000	0.656716	
mm_95403.1	chr11	49826620	49826820	+	1	NA	NA	NA	-20031	NM_001163671	26420	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0.045000	0.557214	
mm_69572.1	chr7	135700799	135700999	-	1	NA	NA	NA	15480	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.020000	0.442786	
mm_60363.1	chr7	44441870	44442070	+	1	NA	NA	NA	-517	NM_198250	272381	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	0.030000	0.631841	
mm_121383.1	chr14	118953059	118953259	+	1	NA	NA	NA	15227	NM_008929	100037258	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.040000	0.457711	
mm_111929.1	chr12	108885787	108885987	-	1	NA	NA	NA	7311	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.015000	0.477612	
mm_8144.1	chr1	136345875	136346075	-	1	NA	NA	NA	129	NM_001081360	67886	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	0.140000	0.741294	
mm_56165.1	chr6	87993356	87993556	-	1	NA	NA	NA	11773	NR_026990	434064	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	0.005000	0.482587	
mm_159847.1	chr5	136373188	136373388	-	1	NA	NA	NA	2515	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	0.010000	0.507463	
mm_126784.1	chr15	86202726	86202926	+	1	NA	NA	NA	-11633	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.020000	0.557214	
mm_50730.1	chr6	52492389	52492589	+	1	NA	NA	NA	38	NR_046049	74304	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0.025000	0.507463	
mm_60240.1	chr7	43713125	43713325	+	1	NA	NA	NA	658	NM_001039042	626834	Mm.389891	NM_001039042	ENSMUSG00000054046	Klk13	Egfbp-2|mGk-13	kallikrein related-peptidase 13	protein-coding	0.020000	0.626866	
mm_138213.1	chr17	34306552	34306752	+	1	NA	NA	NA	785	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.010000	0.562189	
mm_133504.1	chr16	90738101	90738301	+	1	NA	NA	NA	-123	NM_029844	77037	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.030000	0.517413	
mm_9939.1	chr1	190170095	190170295	-	1	NA	NA	NA	485	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding	0.060000	0.527363	
mm_24575.1	chr3	93444568	93444768	+	1	NA	NA	NA	2338	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.075000	0.651741	
mm_130186.1	chr15	93575085	93575285	-	1	NA	NA	NA	20706	NM_001033217	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.015000	0.507463	
mm_21967.1	chr2	167300810	167301010	-	1	NA	NA	NA	48268	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.005000	0.432836	
mm_168023.1	chrY	90738074	90738274	+	1	NA	NA	NA	16876	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.457711	
mm_76567.1	chr8	88650031	88650231	-	1	NA	NA	NA	2784	NM_145857	257632	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0.015000	0.512438	-34(TTCTATTAAAGC,-,0.00),55(GCCTCTAAGAAG,-,0.00)
mm_123618.1	chr14	68120795	68120995	-	1	NA	NA	NA	-2857	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.005000	0.487562	
mm_122381.1	chr14	40893214	40893414	-	1	NA	NA	NA	-349	NM_177816	328381	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.010000	0.467662	
mm_81851.1	chr9	118629084	118629284	+	1	NA	NA	NA	22475	NM_133721	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.025000	0.482587	
mm_28339.1	chr3	89393064	89393264	-	1	NA	NA	NA	39	NM_009565	22724	Mm.262184	NM_009565	ENSMUSG00000028042	Zbtb7b	Thpok|Zfp67|c-Krox	zinc finger and BTB domain containing 7B	protein-coding	0.065000	0.696517	
mm_15782.1	chr2	164334198	164334398	+	1	NA	NA	NA	1533	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.015000	0.427861	
mm_147773.1	chr18	61484507	61484707	-	1	NA	NA	NA	0	NR_045419	442846	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.030000	0.547264	-35(GACTTTAAATAG,-,0.00),-33(CTTTAAATAGCA,+,0.00)
mm_106386.1	chr11	118513246	118513446	-	1	NA	NA	NA	36386	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.040000	0.646766	
mm_128294.1	chr15	37234307	37234507	-	1	NA	NA	NA	1371	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	0.130000	0.786070	
mm_14241.1	chr2	127838692	127838892	+	1	NA	NA	NA	-6933	NM_009772	12235	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	0.010000	0.537313	
mm_135481.1	chr16	46008801	46009001	-	1	NA	NA	NA	1512	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.010000	0.487562	
mm_83102.1	chr9	40339496	40339696	-	1	NA	NA	NA	6124	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.020000	0.532338	
mm_1417.1	chr1	67159352	67159552	+	1	NA	NA	NA	36425	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.373134	
mm_157778.1	chrX	73786762	73786962	-	1	NA	NA	NA	35	NM_008323	15929	Mm.14825	NM_008323	ENSMUSG00000002010	Idh3g	-	isocitrate dehydrogenase 3 (NAD+), gamma	protein-coding	0.060000	0.542289	
mm_54763.1	chr6	41218502	41218702	-	1	NA	NA	NA	-83670	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.025000	0.497512	
mm_34297.1	chr4	141664109	141664309	+	1	NA	NA	NA	-94	NM_001033150	69582	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	0.115000	0.741294	
mm_65875.1	chr7	29518454	29518654	-	1	NA	NA	NA	-13094	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.120000	0.676617	
mm_51256.1	chr6	71925995	71926195	+	1	NA	NA	NA	17042	NM_009088	20019	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0.005000	0.407960	
mm_35725.1	chr4	44710560	44710760	-	1	NA	NA	NA	-220	NM_008782	18507	Mm.439659	NM_008782	ENSMUSG00000014030	Pax5	BSAP|EBB-1|KLP|Pax-5	paired box 5	protein-coding	0.045000	0.432836	
mm_72719.1	chr8	85036794	85036994	+	1	NA	NA	NA	-21	NM_145390	212999	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	0.080000	0.547264	
mm_112751.1	chr13	19341876	19342076	+	1	NA	NA	NA	53837	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.407960	
mm_42745.1	chr5	120753747	120753947	+	1	NA	NA	NA	-3999	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.005000	0.358209	
mm_39521.1	chr5	21257945	21258145	+	1	NA	NA	NA	71778	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.010000	0.457711	
mm_138182.1	chr17	34267458	34267658	+	1	NA	NA	NA	4331	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.020000	0.562189	
mm_7724.1	chr1	130715699	130715899	-	1	NA	NA	NA	22	NR_027859	18640	Mm.249861	NM_008825	ENSMUSG00000026409	Pfkfb2	4930568D07Rik	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding	0.070000	0.651741	
mm_23187.1	chr3	40950310	40950510	+	1	NA	NA	NA	-221	NM_001040399	214048	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0.180000	0.820896	
mm_77529.1	chr8	123013157	123013357	-	1	NA	NA	NA	29027	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.010000	0.482587	
mm_90386.1	chr10	127290695	127290895	+	1	NA	NA	NA	2	NM_001290183	13198	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	0.055000	0.577114	
mm_105525.1	chr11	106300409	106300609	-	1	NA	NA	NA	1387	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.055000	0.582090	
mm_49677.1	chr6	32050172	32050372	+	1	NA	NA	NA	-16	NM_029587	76382	Mm.23510	NM_029587	ENSMUSG00000029766	1700012A03Rik	AI429084	RIKEN cDNA 1700012A03 gene	protein-coding	0.005000	0.497512	
mm_89115.1	chr10	84755940	84756140	+	1	NA	NA	NA	-8	NM_001024918	71137	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.060000	0.567164	
mm_138197.1	chr17	34291723	34291923	+	1	NA	NA	NA	-4052	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.025000	0.552239	
mm_60989.1	chr7	49160648	49160848	+	1	NA	NA	NA	-85441	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.015000	0.542289	
mm_17638.1	chr2	31141924	31142124	-	1	NA	NA	NA	-16	NM_001038700	14269	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.135000	0.741294	
mm_107492.1	chr12	38783392	38783592	+	1	NA	NA	NA	-219	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.000000	0.442786	
mm_114632.1	chr13	76383984	76384184	+	1	NA	NA	NA	-877	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.055000	0.661692	
mm_82364.1	chr9	14500417	14500617	-	1	NA	NA	NA	-35	NM_173433	244694	Mm.240457	NM_173433	ENSMUSG00000053914	Kdm4d	4932416A15|Jmjd2d	lysine (K)-specific demethylase 4D	protein-coding	0.055000	0.507463	-12(TTTTTTAAACCG,+,0.00)
mm_55535.1	chr6	70743912	70744112	-	1	NA	NA	NA	48163	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.452736	
mm_144346.1	chr18	15194376	15194576	+	1	NA	NA	NA	-43030	NM_134112	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.000000	0.398010	
mm_44238.1	chr5	5265899	5266099	-	1	NA	NA	NA	69	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.015000	0.487562	
mm_154246.1	chr19	60766427	60766627	-	1	NA	NA	NA	7858	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.035000	0.567164	
mm_39753.1	chr5	29735645	29735845	+	1	NA	NA	NA	-153	NM_001037940	23950	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0.055000	0.597015	
mm_92973.1	chr10	86491798	86491998	-	1	NA	NA	NA	6998	NM_001164495	27204	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	0.005000	0.552239	
mm_39408.1	chr5	14521509	14521709	+	1	NA	NA	NA	6691	NM_001110796	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.000000	0.601990	
mm_129374.1	chr15	78119922	78120122	-	1	NA	NA	NA	-742	NM_007583	12300	Mm.277338	NM_007583	ENSMUSG00000019146	Cacng2	AW060990|B230105C07Rik|B930041E13Rik|stargazer|stargazin|stg|wag|waggler	calcium channel, voltage-dependent, gamma subunit 2	protein-coding	0.095000	0.711443	
mm_8920.1	chr1	163314018	163314218	-	1	NA	NA	NA	-468	NM_175686	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.040000	0.447761	-34(GCTTTAATAGGC,+,0.00)
mm_108854.1	chr12	98628064	98628264	+	1	NA	NA	NA	22	NM_001289574	104871	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	0.085000	0.656716	
mm_68998.1	chr7	126676275	126676475	-	1	NA	NA	NA	-18	NM_133670	20887	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|Stp|Stp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	0.005000	0.542289	
mm_122782.1	chr14	54410157	54410357	-	1	NA	NA	NA	-785	NM_001253680	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.020000	0.537313	
mm_110971.1	chr12	76961951	76962151	-	1	NA	NA	NA	197	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.080000	0.631841	
mm_29676.1	chr3	122871536	122871736	-	1	NA	NA	NA	-23436	NM_007980	14079	Mm.28398	NM_007980	ENSMUSG00000023057	Fabp2	Fabpi|I-FABP	fatty acid binding protein 2, intestinal	protein-coding	0.005000	0.422886	
mm_169654.1	chr15	55944907	55945107	-	1	NA	NA	NA	-38058	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding	0.035000	0.522388	
mm_127690.1	chr15	102981523	102981723	+	1	NA	NA	NA	4591	NM_008272	15427	Mm.4765	NM_008272	ENSMUSG00000036139	Hoxc9	Hox-3.2	homeobox C9	protein-coding	0.040000	0.447761	
mm_82674.1	chr9	22131673	22131873	-	1	NA	NA	NA	92	NM_001102404	11433	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.080000	0.696517	
mm_114242.1	chr13	56625142	56625342	+	1	NA	NA	NA	15639	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.025000	0.557214	
mm_79020.1	chr9	45858527	45858727	+	1	NA	NA	NA	20082	NM_011792	23821	Mm.24044	NM_011792	ENSMUSG00000032086	Bace1	ASP2|Bace|C76936	beta-site APP cleaving enzyme 1	protein-coding	0.015000	0.442786	
mm_87736.1	chr10	60161531	60161731	+	1	NA	NA	NA	34855	NR_105871	102465546		NR_105871	ENSMUSG00000105468	Mir6906	mmu-mir-6906	microRNA 6906	ncRNA	0.010000	0.517413	-35(CACTATAAGAGG,-,0.00)
mm_131643.1	chr16	20516936	20517136	+	1	NA	NA	NA	-28	NM_007889	13544	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	-	dishevelled segment polarity protein 3	protein-coding	0.140000	0.791045	
mm_74333.1	chr8	127063954	127064154	+	1	NA	NA	NA	-2	NM_033620	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.160000	0.800995	
mm_45199.1	chr5	52566104	52566304	-	1	NA	NA	NA	102	NM_001310604	246316	Mm.44721	NM_144945	ENSMUSG00000039252	Lgi2	mKIAA1916	leucine-rich repeat LGI family, member 2	protein-coding	0.175000	0.820896	
mm_67192.1	chr7	73942363	73942563	-	1	NA	NA	NA	71219	NM_009181	20450	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0.015000	0.492537	14(GGCCCTAAAGAG,-,0.00)
mm_45710.1	chr5	84067028	84067228	-	1	NA	NA	NA	350254	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.000000	0.348259	
mm_20552.1	chr2	131071139	131071339	-	1	NA	NA	NA	-7425	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.030000	0.587065	
mm_96278.1	chr11	62879470	62879670	+	1	NA	NA	NA	80	NM_026210	67510	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	0.090000	0.671642	
mm_8683.1	chr1	156939441	156939641	-	1	NA	NA	NA	85	NM_001159968	78255	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0.170000	0.781095	
mm_10321.1	chr2	11250346	11250546	+	1	NA	NA	NA	78064	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.010000	0.492537	
mm_150418.1	chr19	37263870	37264070	+	1	NA	NA	NA	125	NR_040299	77059	Mm.251476	NR_040298		4931408D14Rik	-	RIKEN cDNA 4931408D14 gene	ncRNA	0.040000	0.547264	
mm_106260.1	chr11	117967184	117967384	-	1	NA	NA	NA	2082	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.015000	0.611940	
mm_110507.1	chr12	54695692	54695892	-	1	NA	NA	NA	102	NM_001331162	66266	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	0.110000	0.666667	
mm_70111.1	chr7	142666731	142666931	-	1	NA	NA	NA	-15	NM_001315488	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.010000	0.562189	
mm_112519.1	chr13	9145285	9145485	+	1	NA	NA	NA	51504	NM_172585	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.015000	0.393035	
mm_49652.1	chr6	30903461	30903661	+	1	NA	NA	NA	-6767	NM_017478	54160	Mm.39896	NM_017478	ENSMUSG00000025607	Copg2	AW227625|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding	0.005000	0.373134	1(GACTCTTAAAAG,-,0.00),3(CTCTTAAAAGTC,+,0.00)
mm_110244.1	chr12	31265040	31265240	-	1	NA	NA	NA	-154	NM_008482	16777	Mm.172674	NM_008482	ENSMUSG00000002900	Lamb1	C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1	laminin B1	protein-coding	0.055000	0.641791	
mm_38712.1	chr4	145224758	145224958	-	1	NA	NA	NA	22012	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.020000	0.542289	
mm_149189.1	chr19	9938821	9939021	+	1	NA	NA	NA	-39388	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.045000	0.502488	
mm_929.1	chr1	55405902	55406102	+	1	NA	NA	NA	56	NM_001114663	227120	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.140000	0.761194	
mm_90542.1	chr10	128091486	128091686	+	1	NA	NA	NA	-1197	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.035000	0.572139	
mm_122615.1	chr14	51105292	51105492	-	1	NA	NA	NA	9392	NM_201239	58809	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	0.010000	0.472637	
mm_50612.1	chr6	49822619	49822819	+	1	NA	NA	NA	9	NM_023456	109648	Mm.154796	NM_023456	ENSMUSG00000029819	Npy	0710005A05Rik	neuropeptide Y	protein-coding	0.085000	0.686567	-33(CTCCATAAAAGC,-,0.00)
mm_59413.1	chr7	27121497	27121697	+	1	NA	NA	NA	1642	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.010000	0.582090	
mm_34948.1	chr4	155943754	155943954	+	1	NA	NA	NA	41	NM_021402	140499	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	0.135000	0.751244	
mm_68668.1	chr7	118855937	118856137	-	1	NA	NA	NA	-39	NM_023197	66356	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0.140000	0.721393	
mm_121718.1	chr14	16466611	16466811	-	1	NA	NA	NA	101505	NM_009409	21974	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.000000	0.353234	53(TTTTATATAAGG,-,0.00)
mm_76896.1	chr8	105771161	105771361	-	1	NA	NA	NA	-12654	NM_027469	70575	Mm.40954	NM_027469	ENSMUSG00000013150	Gfod2	5730466C23Rik	glucose-fructose oxidoreductase domain containing 2	protein-coding	0.005000	0.378109	-81(CTCCTTTAAAGG,-,0.00),-80(TCCTTTAAAGGA,+,0.00),-80(TCCTTTAAAGGA,-,0.00),-79(CCTTTAAAGGAG,+,0.00)
mm_154415.1	chrM	15479	15679	+	1	NA	NA	NA	NA	NA									0.000000	0.308458	
mm_60696.1	chr7	45175203	45175403	+	1	NA	NA	NA	2000	NR_106022	102465638		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0.015000	0.537313	
mm_58726.1	chr7	13025639	13025839	+	1	NA	NA	NA	1587	NM_011588	21849	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	0.010000	0.502488	
mm_89430.1	chr10	91082956	91083156	+	1	NA	NA	NA	17	NM_026166	67454	Mm.252843	NM_026166	ENSMUSG00000019975	Ikbip	1200009F10Rik|1700023M03Rik|D18354|Ikip	IKBKB interacting protein	protein-coding	0.065000	0.641791	
mm_98129.1	chr11	87404981	87405181	+	1	NA	NA	NA	16	NM_031386	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.090000	0.641791	
mm_87657.1	chr10	58479937	58480137	+	1	NA	NA	NA	-17900	NM_001162956	76138	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.015000	0.368159	
mm_51024.1	chr6	65142967	65143167	+	1	NA	NA	NA	1663	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.005000	0.393035	-34(GCTTAAATAGAC,+,0.00)
mm_142214.1	chr17	37023260	37023460	-	1	NA	NA	NA	38	NM_010814	17441	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	0.015000	0.547264	
mm_146754.1	chr18	16767886	16768086	-	1	NA	NA	NA	41260	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.015000	0.452736	
mm_68041.1	chr7	101361822	101362022	-	1	NA	NA	NA	13853	NM_001040111	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.005000	0.547264	
mm_120838.1	chr14	75179706	75179906	+	1	NA	NA	NA	43381	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.045000	0.472637	
mm_157134.1	chrX	9453621	9453821	-	1	NA	NA	NA	15603	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.015000	0.467662	
mm_115223.1	chr13	109685906	109686106	+	1	NA	NA	NA	-217803	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.040000	0.567164	
mm_64771.1	chr7	4995928	4996128	-	1	NA	NA	NA	73	NM_026741	68490	Mm.76400	NM_026741	ENSMUSG00000051550	Zfp579	1110003A17Rik|Znf579	zinc finger protein 579	protein-coding	0.070000	0.691542	
mm_123008.1	chr14	54994198	54994398	-	1	NA	NA	NA	251	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.025000	0.457711	
mm_93918.1	chr10	127067734	127067934	-	1	NA	NA	NA	2427	NM_025982	67125	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	0.005000	0.522388	
mm_115020.1	chr13	98613343	98613543	+	1	NA	NA	NA	23967	NM_026685	68344	Mm.28766	NM_026685	ENSMUSG00000046082	Tmem174	0610009B10Rik|AA986094	transmembrane protein 174	protein-coding	0.100000	0.656716	
mm_28337.1	chr3	89387249	89387449	-	1	NA	NA	NA	-4515	NR_040403	545539	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	ENSMUSG00000074466|OTTMUSG00000021274	predicted gene 15417	ncRNA	0.015000	0.626866	
mm_57614.1	chr6	128138018	128138218	-	1	NA	NA	NA	5460	NM_175414	109246	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597	tetraspanin 9	protein-coding	0.010000	0.502488	
mm_46164.1	chr5	96162914	96163114	-	1	NA	NA	NA	-1024	NM_144910	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.040000	0.437811	-31(GCTTTTAAACCC,+,0.00),9(GTTTTTAAAAAG,-,0.00)
mm_34525.1	chr4	149149894	149150094	+	1	NA	NA	NA	-12394	NM_027263	69928	Mm.260893	NM_027263	ENSMUSG00000073705	Apitd1	2610040C18Rik|2810407L01Rik|CENP-S	apoptosis-inducing, TAF9-like domain 1	protein-coding	0.025000	0.522388	
mm_74022.1	chr8	121597687	121597887	+	1	NA	NA	NA	7319	NM_026160	67443	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0.010000	0.547264	
mm_32421.1	chr4	107097500	107097700	+	1	NA	NA	NA	709	NM_172873	242603	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	0.010000	0.537313	
mm_168151.1	chr10	39198754	39198954	+	1	NA	NA	NA	-35060	NM_001127376	327743	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|ENSMUSG00000062074|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0.010000	0.457711	
mm_43283.1	chr5	133239470	133239670	+	1	NA	NA	NA	-697227	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.000000	0.472637	
mm_11863.1	chr2	48833209	48833409	+	1	NA	NA	NA	19200	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.005000	0.368159	
mm_60925.1	chr7	46847039	46847239	+	1	NA	NA	NA	57	NM_001136069	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.050000	0.582090	
mm_82746.1	chr9	26803565	26803765	-	1	NA	NA	NA	2752	NM_153803	244757	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0.015000	0.512438	
mm_15492.1	chr2	157737358	157737558	+	1	NA	NA	NA	57	NM_025680	66642	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	0.075000	0.597015	
mm_123769.1	chr14	70211934	70212134	-	1	NA	NA	NA	-4363	NM_011366	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.015000	0.507463	
mm_120550.1	chr14	67716252	67716452	+	1	NA	NA	NA	254	NM_001285933	105440	Mm.6720	NM_134073	ENSMUSG00000034327	Kctd9	-	potassium channel tetramerisation domain containing 9	protein-coding	0.160000	0.786070	
mm_5024.1	chr1	193173485	193173685	+	1	NA	NA	NA	8	NM_181048	319266	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	0.075000	0.606965	
mm_103982.1	chr11	84827184	84827384	-	1	NA	NA	NA	1719	NM_177564	192970	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	0.010000	0.442786	
mm_32164.1	chr4	100095783	100095983	+	1	NA	NA	NA	92	NM_001312690	26563	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding	0.065000	0.626866	
mm_87158.1	chr10	36628142	36628342	+	1	NA	NA	NA	121435	NM_001253356	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0.010000	0.492537	
mm_115109.1	chr13	103774555	103774755	+	1	NA	NA	NA	-10073	NM_172592	218543	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0.130000	0.721393	
mm_112971.1	chr13	21286888	21287088	+	1	NA	NA	NA	5698	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.010000	0.427861	
mm_41351.1	chr5	90504246	90504446	+	1	NA	NA	NA	13632	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.020000	0.358209	
mm_125184.1	chr15	32245021	32245221	+	1	NA	NA	NA	308	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding	0.075000	0.646766	
mm_51108.1	chr6	67283857	67284057	+	1	NA	NA	NA	16978	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.000000	0.422886	
mm_145357.1	chr18	56676513	56676713	+	1	NA	NA	NA	-31200	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.025000	0.577114	
mm_9993.1	chr1	191393589	191393789	-	1	NA	NA	NA	3352	NM_144880	226849	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0.005000	0.323383	
mm_50950.1	chr6	58643933	58644133	+	1	NA	NA	NA	47361	NM_011920	26357	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP-binding cassette, sub-family G (WHITE), member 2	protein-coding	0.005000	0.442786	
mm_116682.1	chr13	49248083	49248283	-	1	NA	NA	NA	-20	NM_025491	66329	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.110000	0.661692	
mm_118599.1	chr14	20695252	20695452	+	1	NA	NA	NA	384	NM_028428	73068	Mm.277552	NM_028428	ENSMUSG00000039357	Fut11	3110009G03Rik|AI317183	fucosyltransferase 11	protein-coding	0.170000	0.711443	
mm_86420.1	chr10	3740162	3740362	+	1	NA	NA	NA	-115	NM_001159942	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.065000	0.636816	
mm_41170.1	chr5	87979374	87979574	+	1	NA	NA	NA	23	NM_027631	70977	Mm.272787	NM_027631	ENSMUSG00000007907	Cabs1	4931407G18Rik|AI428159|Clph	calcium binding protein, spermatid specific 1	protein-coding	0.015000	0.487562	
mm_14464.1	chr2	131233990	131234190	+	1	NA	NA	NA	27	NM_144888	228607	Mm.287226	NM_144888	ENSMUSG00000037523	Mavs	D430028G21Rik|IPS-1|Visa|cardif	mitochondrial antiviral signaling protein	protein-coding	0.065000	0.611940	
mm_142408.1	chr17	45488283	45488483	-	1	NA	NA	NA	-13445	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.015000	0.477612	
mm_45280.1	chr5	64932798	64932998	-	1	NA	NA	NA	-199	NM_030682	21897	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.045000	0.537313	-81(CCTTTTCGAGGA,+,0.00)
mm_160575.1	chr9	58488374	58488574	+	1	NA	NA	NA	-129	NM_176921	319477	Mm.153674	NM_176921	ENSMUSG00000066607	6030419C18Rik	-	RIKEN cDNA 6030419C18 gene	protein-coding	0.115000	0.741294	
mm_79108.1	chr9	46268652	46268852	+	1	NA	NA	NA	144	NM_080434	66113	Mm.29738	NM_080434	ENSMUSG00000032079	Apoa5	1300007O05Rik|Apoav|RAP3	apolipoprotein A-V	protein-coding	0.015000	0.547264	-33(ATCCCTAAAAGG,-,0.00),-31(CCCTAAAAGGGG,+,0.00)
mm_82418.1	chr9	14902960	14903160	-	1	NA	NA	NA	891	NM_176807	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.000000	0.477612	
mm_88463.1	chr10	77564629	77564829	+	1	NA	NA	NA	-17038	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.020000	0.562189	
mm_118241.1	chr13	111796420	111796620	-	1	NA	NA	NA	12463	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.025000	0.547264	
mm_16167.1	chr2	172545579	172545779	+	1	NA	NA	NA	-3914	NM_009335	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding	0.040000	0.557214	
mm_122308.1	chr14	36774399	36774599	-	1	NA	NA	NA	145036	NM_001347503	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.010000	0.562189	
mm_16157.1	chr2	172393716	172393916	+	1	NA	NA	NA	22	NM_001276423	320664	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.020000	0.522388	
mm_142257.1	chr17	39843225	39843425	-	1	NA	NA	NA	328	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.070000	0.592040	
mm_75480.1	chr8	48555948	48556148	-	1	NA	NA	NA	118642	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.100000	0.726368	
mm_7140.1	chr1	91091531	91091731	-	1	NA	NA	NA	38187	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.040000	0.567164	
mm_46506.1	chr5	105136049	105136249	-	1	NA	NA	NA	3403	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.303483	-65(AACTCTAAAAGG,-,0.00),-43(CCTTTTATAGCC,+,0.00)
mm_17689.1	chr2	32331797	32331997	-	1	NA	NA	NA	13437	NR_029811	387239		NR_029811	ENSMUSG00000092807	Mir199b	Mirn199b|mir-199b	microRNA 199b	ncRNA	0.000000	0.517413	
mm_99901.1	chr11	109651365	109651565	+	1	NA	NA	NA	544	NM_001313976	19084	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.090000	0.611940	-8(TTTTTTAAACCG,+,0.00)
mm_9871.1	chr1	185074076	185074276	-	1	NA	NA	NA	-74627	NM_145515	226778	Mm.7445	NM_145515	ENSMUSG00000026620	Mark1	AW491150|B930025N23Rik|Emk3|Par-1c|mKIAA1477|mPar-1c	MAP/microtubule affinity regulating kinase 1	protein-coding	0.020000	0.477612	
mm_14817.1	chr2	146834530	146834730	+	1	NA	NA	NA	-21259	NM_001033298	228730	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	0.070000	0.527363	
mm_126818.1	chr15	88751555	88751755	+	1	NA	NA	NA	-56	NM_181412	223773	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0.160000	0.815920	
mm_30165.1	chr3	144188921	144189121	-	1	NA	NA	NA	13311	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.020000	0.502488	
mm_50529.1	chr6	49045317	49045517	+	1	NA	NA	NA	8899	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.020000	0.507463	
mm_92858.1	chr10	81545013	81545213	-	1	NA	NA	NA	-67	NM_010301	14672	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19	guanine nucleotide binding protein, alpha 11	protein-coding	0.185000	0.810945	
mm_135607.1	chr16	52249628	52249828	-	1	NA	NA	NA	203353	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.263682	
mm_28544.1	chr3	92868901	92869101	-	1	NA	NA	NA	1204	NM_025621	66533	Mm.144259	NM_025621	ENSMUSG00000090314	2310050C09Rik	-	RIKEN cDNA 2310050C09 gene	protein-coding	0.020000	0.557214	
mm_18946.1	chr2	76770395	76770595	-	1	NA	NA	NA	95180	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.020000	0.422886	
mm_143409.1	chr17	70829864	70830064	-	1	NA	NA	NA	16813	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.055000	0.487562	45(AGCTTTAAATGG,-,0.00)
mm_29232.1	chr3	107213395	107213595	-	1	NA	NA	NA	8237	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.527363	
mm_114436.1	chr13	65278753	65278953	+	1	NA	NA	NA	-1	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.100000	0.611940	
mm_140333.1	chr17	86754086	86754286	+	1	NA	NA	NA	322	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.065000	0.636816	
mm_95210.1	chr11	43598579	43598779	+	1	NA	NA	NA	2883	NM_008375	16204	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0.015000	0.522388	
mm_4896.1	chr1	189728234	189728434	+	1	NA	NA	NA	66	NM_008976	19250	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|OTTMUSG00000022087|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	0.105000	0.726368	
mm_21234.1	chr2	156107930	156108130	-	1	NA	NA	NA	3935	NM_170598	75710	Mm.27660	NM_029397	ENSMUSG00000089824	Rbm12	5730420G12Rik|9430070C08Rik|AI852903|SWAN|mKIAA0765	RNA binding motif protein 12	protein-coding	0.000000	0.407960	
mm_100784.1	chr11	4832981	4833181	-	1	NA	NA	NA	54	NM_001252253	18016	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	0.015000	0.388060	
mm_63502.1	chr7	127840908	127841108	+	1	NA	NA	NA	-800	NM_009294	20909	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.045000	0.547264	
mm_170452.1	chr18	85377973	85378173	-	1	NA	NA	NA	-426549	NM_025969	67105	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	tranlocase of inner mitochondrial membrane 21	protein-coding	0.055000	0.537313	-31(CTCCTTAAGAGG,-,0.00)
mm_31039.1	chr4	41045428	41045628	+	1	NA	NA	NA	2608	NM_007473	11832	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	0.010000	0.542289	
mm_169928.1	chr16	57391490	57391690	-	1	NA	NA	NA	38313	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.145000	0.731343	
mm_50253.1	chr6	42585263	42585463	+	1	NA	NA	NA	12009	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.328358	83(GATTTTAAAAAG,-,0.00)
mm_25239.1	chr3	103914009	103914209	+	1	NA	NA	NA	-11	NM_172684	229675	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0.035000	0.457711	
mm_26283.1	chr3	142505661	142505861	+	1	NA	NA	NA	8827	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.000000	0.368159	46(GTTTATTTAAGG,-,0.00)
mm_148540.1	chr19	4609830	4610030	+	1	NA	NA	NA	5737	NM_153388	225875	Mm.329675	NM_153388	ENSMUSG00000045045	Lrfn4	BC023156|Salm3	leucine rich repeat and fibronectin type III domain containing 4	protein-coding	0.055000	0.606965	
mm_138043.1	chr17	33922728	33922928	+	1	NA	NA	NA	3350	NM_009318	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.030000	0.512438	
mm_77269.1	chr8	116435669	116435869	-	1	NA	NA	NA	-69246	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.030000	0.567164	
mm_156793.1	chrX	162845910	162846110	+	1	NA	NA	NA	-16556	NM_001290778	353170	Mm.270186	NM_178935	ENSMUSG00000038344	Txlng	4932441K18Rik|Fiat|Lrp	taxilin gamma	protein-coding	0.005000	0.472637	
mm_22153.1	chr2	172463174	172463374	-	1	NA	NA	NA	-4678	NM_001039560	654821	Mm.389337	NM_001039560	ENSMUSG00000074569	Gcnt7	A330041C17Rik|gnt	glucosaminyl (N-acetyl) transferase family member 7	protein-coding	0.000000	0.577114	
mm_18864.1	chr2	75704949	75705149	-	1	NA	NA	NA	-386	NM_010902	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.050000	0.601990	
mm_150576.1	chr19	40612265	40612465	+	1	NA	NA	NA	-1	NM_001304721	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.085000	0.636816	
mm_156384.1	chrX	139684861	139685061	+	1	NA	NA	NA	-35	NM_001081499	245638	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	0.040000	0.552239	
mm_126529.1	chr15	81988185	81988385	+	1	NA	NA	NA	7745	NM_025503	66346	Mm.54292	NM_025503	ENSMUSG00000061633	1700029P11Rik	-	RIKEN cDNA 1700029P11 gene	protein-coding	0.010000	0.388060	
mm_82883.1	chr9	32514952	32515152	-	1	NA	NA	NA	26400	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.015000	0.383085	41(GGCTTTAAAAAG,-,0.00),42(GCTTTAAAAAGC,+,0.00),43(CTTTAAAAAGCA,+,0.00),65(CTGTAGAAAAGG,-,0.00)
mm_120720.1	chr14	73108150	73108350	+	1	NA	NA	NA	-34260	NM_001170694	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.000000	0.442786	-30(AGCTTTAAAAAA,-,0.00)
mm_101605.1	chr11	34833515	34833715	-	1	NA	NA	NA	26	NM_027411	70385	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0.075000	0.567164	
mm_70148.1	chr7	143459239	143459439	-	1	NA	NA	NA	1711	NM_009876	12577	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.155000	0.736318	
mm_109865.1	chr12	4907448	4907648	-	1	NA	NA	NA	-28	NM_145441	217379	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding	0.190000	0.796020	
mm_156575.1	chrX	151934328	151934528	+	1	NA	NA	NA	21214	NR_029753	723947		NR_029753	ENSMUSG00000065536	Mir98	Mirn98|mir-98|mmu-mir-98	microRNA 98	ncRNA	0.000000	0.467662	19(GGATTTAAAAGA,-,0.00)
mm_82521.1	chr9	20642496	20642696	-	1	NA	NA	NA	210	NM_013911	30843	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding	0.040000	0.587065	
mm_159211.1	chr2	122186058	122186258	-	1	NA	NA	NA	31	NM_026251	67578	Mm.150462	NM_026251	ENSMUSG00000027233	Patl2	4930424G05Rik|Pat1a	protein associated with topoisomerase II homolog 2 (yeast)	protein-coding	0.010000	0.427861	
mm_114670.1	chr13	78590453	78590653	+	1	NA	NA	NA	-391680	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.005000	0.427861	
mm_145736.1	chr18	64265115	64265315	+	1	NA	NA	NA	10856	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.100000	0.731343	
mm_100799.1	chr11	4947900	4948100	-	1	NA	NA	NA	64	NM_010904	380684	Mm.298283	NM_010904	ENSMUSG00000020396	Nefh	NF-H|NF200|Nfh|mKIAA0845	neurofilament, heavy polypeptide	protein-coding	0.090000	0.736318	-32(GGATATAAAAGA,-,0.00)
mm_158258.1	chrX	109005618	109005818	-	1	NA	NA	NA	4233	NR_033596	70550	Mm.482937	NR_033596	ENSMUSG00000081793	5730416F02Rik	-	capping protein (actin filament), gelsolin-like pseudogene	pseudo	0.005000	0.417910	
mm_101018.1	chr11	8575239	8575439	-	1	NA	NA	NA	89196	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.010000	0.552239	
mm_113127.1	chr13	24604980	24605180	+	1	NA	NA	NA	-313	NR_024599	76024	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347|OTTMUSG00000000601|OTTMUSG00000000602	X-linked lymphocyte-regulated 5 pseudogene	pseudo	0.025000	0.522388	-32(ATATTTAAAAGG,-,0.00)
mm_74014.1	chr8	121541984	121542184	+	1	NA	NA	NA	-130	NM_029597	76405	Mm.165697	NM_029597	ENSMUSG00000031809	1700018B08Rik	1700084O22Rik	RIKEN cDNA 1700018B08 gene	protein-coding	0.050000	0.577114	
mm_15041.1	chr2	152810370	152810570	+	1	NA	NA	NA	20247	NM_001289716	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.000000	0.482587	
mm_48063.1	chr5	136567214	136567414	-	1	NA	NA	NA	176	NM_001291234	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.110000	0.691542	
mm_172289.1	chr6	95543673	95543873	+	1	NA	NA	NA	149109	NM_001326558	20917	Mm.371585	NM_011507	ENSMUSG00000061838	Suclg2	AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG	succinate-Coenzyme A ligase, GDP-forming, beta subunit	protein-coding	0.030000	0.562189	-29(GAGTATATAAGC,-,0.00)
mm_122468.1	chr14	45530056	45530256	-	1	NA	NA	NA	-91	NM_146054	218952	Mm.210018	NM_146054	ENSMUSG00000037712	Fermt2	AA960555|Kindlin-2|Mig2|Plekhc1	fermitin family member 2	protein-coding	0.145000	0.825871	
mm_4288.1	chr1	171712819	171713019	+	1	NA	NA	NA	30864	NM_007649	12506	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	0.005000	0.393035	-35(TTCTTTAAAAGG,-,0.00),-34(TCTTTAAAAGGA,+,0.00)
mm_130913.1	chr15	102583363	102583563	-	1	NA	NA	NA	42001	NM_001310070	223922	Mm.208714	NM_146065	ENSMUSG00000052414	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	0.005000	0.283582	
mm_6585.1	chr1	75236773	75236973	-	1	NA	NA	NA	171	NM_001159885	56812	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.085000	0.626866	
mm_169071.1	chr13	29070736	29070936	-	1	NA	NA	NA	54581	NR_045075	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0.045000	0.621891	
mm_42114.1	chr5	110653363	110653563	+	1	NA	NA	NA	12	NM_027156	69663	Mm.5267	NM_027156	ENSMUSG00000029504	Ddx51	2310061O04Rik|AA537002|C81583|R75505	DEAD (Asp-Glu-Ala-Asp) box polypeptide 51	protein-coding	0.150000	0.706468	
mm_16717.1	chr2	7144675	7144875	-	1	NA	NA	NA	-63473	NM_001160292	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.005000	0.497512	
mm_54568.1	chr6	37871384	37871584	-	1	NA	NA	NA	673	NM_145076	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.120000	0.761194	
mm_67574.1	chr7	81992488	81992688	-	1	NA	NA	NA	-289	NM_007562	12173	Mm.243802	NM_007562	ENSMUSG00000025105	Bnc1	AI047752|AW546376|Bnc	basonuclin 1	protein-coding	0.110000	0.706468	
mm_20934.1	chr2	150858742	150858942	-	1	NA	NA	NA	45889	NM_024465	76192	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.025000	0.527363	
mm_94557.1	chr11	11557838	11558038	+	1	NA	NA	NA	68672	NM_028669	73862	Mm.159077	NM_028669	ENSMUSG00000020191	4930415F15Rik	-	RIKEN cDNA 4930415F15 gene	protein-coding	0.015000	0.482587	
mm_41860.1	chr5	104440483	104440683	+	1	NA	NA	NA	4391	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.005000	0.393035	
mm_102103.1	chr11	52480820	52481020	-	1	NA	NA	NA	84492	NM_153117	213673	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.055000	0.557214	
mm_6949.1	chr1	85752383	85752583	-	1	NA	NA	NA	535	NR_106172	102466882		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	0.015000	0.512438	
mm_165652.1	chr3	83841645	83841845	-	1	NA	NA	NA	-137	NM_011905	24088	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.040000	0.626866	
mm_166779.1	chr6	138562905	138563105	+	1	NA	NA	NA	-17619	NR_131103	77982	Mm.146702	NR_131103	ENSMUSG00000100166	B230110G15Rik	-	RIKEN cDNA B230110G15 gene	ncRNA	0.000000	0.427861	
mm_61207.1	chr7	64158857	64159057	+	1	NA	NA	NA	5122	NM_001039104	17364	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.025000	0.507463	
mm_172845.1	chr9	35305375	35305575	+	1	NA	NA	NA	24370	NR_040715	71133	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.025000	0.358209	
mm_788.1	chr1	45332878	45333078	+	1	NA	NA	NA	21440	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.005000	0.343284	-51(TCTTTTAAACTG,+,0.00)
mm_76641.1	chr8	92854731	92854931	-	1	NA	NA	NA	-519	NM_173014	270084	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	A330042H22|Aytl1|Aytl1a|lpafat1	lysophosphatidylcholine acyltransferase 2	protein-coding	0.005000	0.552239	
mm_56247.1	chr6	90736698	90736898	-	1	NA	NA	NA	-20269	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.120000	0.726368	
mm_110650.1	chr12	59012000	59012200	-	1	NA	NA	NA	-83	NM_009147	20334	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	0.095000	0.656716	
mm_168007.1	chrY	4927823	4928023	-	1	NA	NA	NA	1156250	NM_011253	19657	Mm.4711	NM_011253	ENSMUSG00000094658	Rbmy	RBM|Rbm1|Rbm1-rs1|Rbmy1a1|Rbmy1a1-rs1|Rbmy1b	RNA binding motif protein, Y chromosome	protein-coding	0.000000	0.298507	
mm_30297.1	chr3	149076995	149077195	-	1	NA	NA	NA	-122460	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.025000	0.522388	
mm_107932.1	chr12	71309766	71309966	+	1	NA	NA	NA	-18	NM_021532	59036	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	0.155000	0.781095	
mm_158422.1	chrX	139356639	139356839	-	1	NA	NA	NA	31	NR_045455	78526	Mm.439073	NR_045455	ENSMUSG00000086807	Platr21	C330013F16Rik	pluripotency associated transcript 21	ncRNA	0.015000	0.457711	
mm_32521.1	chr4	108834630	108834830	+	1	NA	NA	NA	52	NM_025334	66073	Mm.159965	NM_025334	ENSMUSG00000028567	Txndc12	0610040B21Rik|ERp16|ERp19	thioredoxin domain containing 12 (endoplasmic reticulum)	protein-coding	0.045000	0.512438	
mm_39445.1	chr5	17574181	17574381	+	1	NA	NA	NA	-535	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.040000	0.442786	63(TGCCTTAAAAGG,-,0.00),64(GCCTTAAAAGGA,+,0.00),65(CCTTAAAAGGAT,+,0.00)
mm_93012.1	chr10	87491769	87491969	-	1	NA	NA	NA	1791	NM_008553	17172	Mm.136217	NM_008553	ENSMUSG00000020052	Ascl1	AI225900|ASH1|Mash1|bHLHa46	achaete-scute family bHLH transcription factor 1	protein-coding	0.020000	0.467662	
mm_85390.1	chr9	103230203	103230403	-	1	NA	NA	NA	-17	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.080000	0.646766	-1(GTGCATAAAGGC,-,0.00)
mm_141286.1	chr17	27970013	27970213	-	1	NA	NA	NA	60807	NM_181413	224650	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.015000	0.472637	-13(GCATCTAAAAGC,-,0.00)
mm_73678.1	chr8	111536710	111536910	+	1	NA	NA	NA	170	NM_001168621	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.135000	0.736318	
mm_141674.1	chr17	33909208	33909408	-	1	NA	NA	NA	-130	NR_045146	407803	Mm.250393	NR_045146	ENSMUSG00000092564	BC051226	-	cDNA sequence BC051226	ncRNA	0.115000	0.716418	
mm_109840.1	chr12	4356914	4357114	-	1	NA	NA	NA	120168	NM_010881	17977	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0.015000	0.552239	-32(CCTTTAAGACTG,+,0.00)
mm_157437.1	chrX	38634954	38635154	-	1	NA	NA	NA	89	NM_021550	59048	Mm.441410	NM_021550	ENSMUSG00000048970	C1galt1c1	1500002I11Rik|AB030184|C1GalT2|C81205|Cosmc	C1GALT1-specific chaperone 1	protein-coding	0.070000	0.621891	
mm_98884.1	chr11	97815631	97815831	+	1	NA	NA	NA	16059	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.035000	0.567164	
mm_15328.1	chr2	155754889	155755089	+	1	NA	NA	NA	3772	NM_011171	19124	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	0.010000	0.522388	
mm_142829.1	chr17	51775357	51775557	-	1	NA	NA	NA	36597	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.015000	0.497512	
mm_126188.1	chr15	78615879	78616079	+	1	NA	NA	NA	18932	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.000000	0.497512	
mm_156544.1	chrX	151343784	151343984	+	1	NA	NA	NA	-339	NM_198105	207375	Mm.391339	NM_198105	ENSMUSG00000025262	Fam120c	D930001I21Rik|ORF34	family with sequence similarity 120, member C	protein-coding	0.040000	0.587065	
mm_22004.1	chr2	167765194	167765394	-	1	NA	NA	NA	74117	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.050000	0.626866	
mm_127076.1	chr15	97384515	97384715	+	1	NA	NA	NA	-137328	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.030000	0.552239	
mm_138839.1	chr17	39848658	39848858	+	1	NA	NA	NA	5761	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.110000	0.636816	-86(GCTTTTCTGGCC,+,0.00)
mm_161425.1	chr15	43278441	43278641	-	1	NA	NA	NA	4195	NM_008388	16341	Mm.289992	NM_008388	ENSMUSG00000022336	Eif3e	48kDa|Eif3s6|Int6|eIF3-p46|eIF3-p48	eukaryotic translation initiation factor 3, subunit E	protein-coding	0.005000	0.363184	
mm_50259.1	chr6	43265549	43265749	+	1	NA	NA	NA	5	NM_133674	54324	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	0.095000	0.756219	
mm_114434.1	chr13	65278702	65278902	+	1	NA	NA	NA	-52	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.105000	0.626866	
mm_154443.1	chrM	1352	1552	-	1	NA	NA	NA	NA	NA									0.010000	0.318408	
mm_56908.1	chr6	119314040	119314240	-	1	NA	NA	NA	15064	NM_001172207	211187	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	0.005000	0.572139	
mm_152816.1	chr19	23132713	23132913	-	1	NA	NA	NA	-8413	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.000000	0.522388	
mm_140300.1	chr17	85621110	85621310	+	1	NA	NA	NA	376	NM_011381	20473	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0.020000	0.567164	
mm_54911.1	chr6	47788024	47788224	-	1	NA	NA	NA	15528	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.010000	0.398010	
mm_77505.1	chr8	122699030	122699230	-	1	NA	NA	NA	-21	NM_009824	12398	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0.030000	0.641791	
mm_123758.1	chr14	70203374	70203574	-	1	NA	NA	NA	1149	NM_001271408	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.015000	0.601990	
mm_157174.1	chrX	9516199	9516399	-	1	NA	NA	NA	-46975	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.348259	
mm_31160.1	chr4	43442393	43442593	+	1	NA	NA	NA	216	NM_011571	21754	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.045000	0.597015	
mm_133475.1	chr16	89404597	89404797	+	1	NA	NA	NA	-923	NM_028621	170656	Mm.46109	NM_028621	ENSMUSG00000058368	Krtap21-1	1110017B05Rik|AI506979|KAP21.1|Krtap16-7	keratin associated protein 21-1	protein-coding	0.000000	0.358209	-34(AAGTATATAAGG,-,0.00)
mm_61846.1	chr7	88290906	88291106	+	1	NA	NA	NA	12921	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.000000	0.398010	-42(GCCCTTAAAGAG,-,0.00),-40(CCTTAAAGAGTT,+,0.00)
mm_24892.1	chr3	96161902	96162102	+	1	NA	NA	NA	32	NM_181409	194126	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	0.030000	0.507463	-66(CTCCTTTAAGGG,-,0.00),-65(TCCTTTAAGGGG,+,0.00),-64(CCTTTAAGGGGC,+,0.00)
mm_93561.1	chr10	116515296	116515496	-	1	NA	NA	NA	-41873	NM_021452	58802	Mm.440652	NM_021452	ENSMUSG00000054934	Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding	0.020000	0.303483	
mm_77856.1	chr9	5312066	5312266	+	1	NA	NA	NA	3317	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.000000	0.253731	
mm_46269.1	chr5	99976475	99976675	-	1	NA	NA	NA	2363	NM_001077266	11991	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.025000	0.373134	67(TCTTATAAAGAT,+,0.00)
mm_102626.1	chr11	62538791	62538991	-	1	NA	NA	NA	370	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.140000	0.756219	
mm_150158.1	chr19	32255147	32255347	+	1	NA	NA	NA	-44234	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.010000	0.462687	
mm_129264.1	chr15	76870985	76871185	-	1	NA	NA	NA	350	NM_001007568	71591	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	0.080000	0.641791	
mm_57617.1	chr6	128200475	128200675	-	1	NA	NA	NA	-16772	NR_077223	330427	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	0.080000	0.681592	
mm_96695.1	chr11	69601144	69601344	+	1	NA	NA	NA	4716	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.040000	0.552239	
mm_42477.1	chr5	115466164	115466364	+	1	NA	NA	NA	-2	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.020000	0.562189	-27(ATGTATAAAAGA,-,0.00)
mm_149407.1	chr19	11392715	11392915	+	1	NA	NA	NA	-14846	NM_029499	64380	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	0.000000	0.417910	
mm_144427.1	chr18	21001382	21001582	+	1	NA	NA	NA	182	NM_001303005	56515	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	0.110000	0.726368	
mm_29804.1	chr3	127789650	127789850	-	1	NA	NA	NA	-163	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.040000	0.601990	
mm_12028.1	chr2	58160999	58161199	+	1	NA	NA	NA	-977	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.050000	0.442786	
mm_80733.1	chr9	94668804	94669004	+	1	NA	NA	NA	-988	NM_177909	331004	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.015000	0.517413	
mm_116824.1	chr13	54598736	54598936	-	1	NA	NA	NA	8605	NM_025933	67044	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	0.030000	0.601990	
mm_52822.1	chr6	121356775	121356975	+	1	NA	NA	NA	10178	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.020000	0.547264	
mm_23396.1	chr3	57796107	57796307	+	1	NA	NA	NA	51550	NM_019410	18645	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	0.005000	0.427861	-10(GGTTTTAAATGC,-,0.00)
mm_170259.1	chr18	14647835	14648035	-	1	NA	NA	NA	34979	NM_001161369	268996	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	0.025000	0.472637	
mm_109195.1	chr12	108635615	108635815	+	1	NA	NA	NA	-38	NM_001163396	14026	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.010000	0.477612	
mm_136934.1	chr17	14169620	14169820	+	1	NA	NA	NA	34111	NM_172826	240025	Mm.79993	NM_172826	ENSMUSG00000048826	Dact2	2900084M21Rik|A630024E20|Dpr2|Frd2|dapper2	dishevelled-binding antagonist of beta-catenin 2	protein-coding	0.015000	0.527363	
mm_30432.1	chr3	153263641	153263841	-	1	NA	NA	NA	34908	NR_126464	75489	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0.020000	0.417910	
mm_11810.1	chr2	43950447	43950647	+	1	NA	NA	NA	114777	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.005000	0.527363	
mm_53798.1	chr6	146782346	146782546	+	1	NA	NA	NA	-23084	NM_172309	272322	Mm.333500	NM_172309	ENSMUSG00000040187	Arntl2	4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding	0.045000	0.522388	-28(TTGTTTTTAAGG,-,0.00)
mm_68387.1	chr7	109456543	109456743	-	1	NA	NA	NA	-17590	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	0.015000	0.542289	
mm_57283.1	chr6	124364374	124364574	-	1	NA	NA	NA	12	NR_131162	72268	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	0.015000	0.517413	
mm_73626.1	chr8	110703140	110703340	+	1	NA	NA	NA	-18236	NM_198625	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.000000	0.517413	-32(AGCTATTAAAGG,-,0.00)
mm_40758.1	chr5	66958502	66958702	+	1	NA	NA	NA	-9814	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.010000	0.278607	
mm_62184.1	chr7	97480824	97481024	+	1	NA	NA	NA	-32	NM_027256	101861	Mm.27383	NM_027256	ENSMUSG00000025133	Ints4	2610034N24Rik|AA692684|AW493223	integrator complex subunit 4	protein-coding	0.030000	0.587065	
mm_104172.1	chr11	87591618	87591818	-	1	NA	NA	NA	-499	NM_133215	170749	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0.060000	0.562189	
mm_89368.1	chr10	88731000	88731200	+	1	NA	NA	NA	1	NM_001037166	237433	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.065000	0.462687	-65(GCATTTAGAGGA,+,0.00)
mm_92452.1	chr10	77776913	77777113	-	1	NA	NA	NA	-5688	NM_001101630	100041261	Mm.477434	NM_001101630	ENSMUSG00000095817	Gm3238	-	predicted gene 3238	protein-coding	0.005000	0.522388	
mm_127731.1	chr15	103273707	103273907	+	1	NA	NA	NA	889	NM_019817	56447	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	0.000000	0.373134	
mm_156986.1	chrX	7319211	7319411	-	1	NA	NA	NA	47	NM_001243762	12728	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	0.085000	0.691542	
mm_16839.1	chr2	11501623	11501823	-	1	NA	NA	NA	367	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.080000	0.626866	
mm_45502.1	chr5	72378631	72378831	-	1	NA	NA	NA	125477	NM_016869	53419	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.015000	0.452736	
mm_94136.1	chr10	128704198	128704398	-	1	NA	NA	NA	753	NM_183417	12566	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	0.005000	0.502488	
mm_92251.1	chr10	70592763	70592963	-	1	NA	NA	NA	-51	NM_001162846	70911	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding	0.000000	0.417910	80(TGGTCTTTAAGG,-,0.00)
mm_71769.1	chr8	66442454	66442654	+	1	NA	NA	NA	43953	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.005000	0.358209	
mm_14032.1	chr2	122152814	122153014	+	1	NA	NA	NA	5227	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.000000	0.333333	
mm_136888.1	chr17	13010281	13010481	+	1	NA	NA	NA	2542	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.000000	0.422886	
mm_152942.1	chr19	28929029	28929229	-	1	NA	NA	NA	-34791	NM_028922	74411	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	0.000000	0.507463	-62(GCCTCTATAGGG,-,0.00)
mm_22399.1	chr2	181237473	181237673	-	1	NA	NA	NA	4454	NM_183162	229003	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.020000	0.611940	
mm_2315.1	chr1	91801427	91801627	+	1	NA	NA	NA	66	NM_007855	13345	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	0.105000	0.646766	
mm_38418.1	chr4	139176979	139177179	-	1	NA	NA	NA	3576	NR_033543	100038595	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	ENSMUSG00000073739|OTTMUSG00000009902|OTTMUSG00000033208	predicted gene 16287	ncRNA	0.000000	0.462687	
mm_99156.1	chr11	100581191	100581391	+	1	NA	NA	NA	5400	NM_001146318	12799	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.010000	0.502488	
mm_84727.1	chr9	74910343	74910543	-	1	NA	NA	NA	-42610	NM_001113283	235493	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	0.005000	0.432836	-76(CCCTAAATAGCT,+,0.00)
mm_11468.1	chr2	32362973	32363173	+	1	NA	NA	NA	63	NM_001252536	68379	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	0.125000	0.721393	
mm_17886.1	chr2	34962886	34963086	-	1	NA	NA	NA	-1214	NM_001326601	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.025000	0.492537	
mm_4188.1	chr1	171174355	171174555	+	1	NA	NA	NA	18937	NM_001315500	17528	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0.030000	0.542289	69(CCCTATAGACAG,+,0.00)
mm_115613.1	chr13	12040699	12040899	-	1	NA	NA	NA	66146	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.010000	0.388060	
mm_37865.1	chr4	132332455	132332655	-	1	NA	NA	NA	-3017	NM_027925	71787	Mm.239183	NM_027925	ENSMUSG00000028898	Trnau1ap	1110007F05Rik|AA387999|Secp43|Trspap1|WI1-2643G14.2	tRNA selenocysteine 1 associated protein 1	protein-coding	0.015000	0.517413	
mm_105207.1	chr11	102107731	102107931	-	1	NA	NA	NA	1	NM_001346771	217212	Mm.46248	NM_145435	ENSMUSG00000017311	Pyy	-	peptide YY	protein-coding	0.025000	0.606965	
mm_76604.1	chr8	90348265	90348465	-	1	NA	NA	NA	-113	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding	0.155000	0.835821	
mm_63985.1	chr7	140090831	140091031	+	1	NA	NA	NA	-2465	NM_009475	22264	Mm.439707	NM_009475	ENSMUSG00000025467	Prap1	Upa	proline-rich acidic protein 1	protein-coding	0.030000	0.467662	
mm_136999.1	chr17	17448772	17448972	+	1	NA	NA	NA	46186	NM_025681	66643	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.040000	0.567164	
mm_113181.1	chr13	24905501	24905701	+	1	NA	NA	NA	1	NR_045182	73326	Mm.458692	NR_045182		4932702P03Rik	1700047I16Rik	RIKEN cDNA 4932702P03 gene	ncRNA	0.045000	0.592040	
mm_127741.1	chr15	103305346	103305546	+	1	NA	NA	NA	4992	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.110000	0.666667	
mm_163803.1	chr14	19415709	19415909	-	1	NA	NA	NA	186778	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.368159	
mm_80168.1	chr9	71584489	71584689	+	1	NA	NA	NA	7771	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	0.005000	0.432836	
mm_23572.1	chr3	63296112	63296312	+	1	NA	NA	NA	117	NM_001289463	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.035000	0.562189	
mm_172401.1	chr7	144254979	144255179	-	1	NA	NA	NA	-29306	NM_001081370	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.015000	0.492537	
mm_171226.1	chr3	61889602	61889802	-	1	NA	NA	NA	-449075	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	0.000000	0.452736	
mm_155974.1	chrX	106125901	106126101	+	1	NA	NA	NA	-17274	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.005000	0.338308	-72(CCTTTTCAAGTC,+,0.00)
mm_72680.1	chr8	84948754	84948954	+	1	NA	NA	NA	1863	NM_144929	234542	Mm.461701	NM_144929	ENSMUSG00000048617	Rtbdn	A330096I21Rik|BC022744|Rtbnd	retbindin	protein-coding	0.005000	0.472637	
mm_6355.1	chr1	71730948	71731148	-	1	NA	NA	NA	77713	NR_040308	100042814	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	ENSMUSG00000073652|Gm15456|OTTMUSG00000022136	apolipoprotein L 7d	ncRNA	0.000000	0.373134	-34(CTGCATAAAAAC,-,0.00)
mm_71156.1	chr8	40307926	40308126	+	1	NA	NA	NA	-25	NM_030110	78506	Mm.169893	NM_030110	ENSMUSG00000039478	Micu3	2900075B16Rik|Efha2	mitochondrial calcium uptake family, member 3	protein-coding	0.145000	0.761194	
mm_170163.1	chr17	52149260	52149460	+	1	NA	NA	NA	266633	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.010000	0.447761	
mm_118173.1	chr13	106836296	106836496	-	1	NA	NA	NA	100519	NM_029665	76582	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.015000	0.452736	54(GCTTTAAAATTC,+,0.00)
mm_62134.1	chr7	97081687	97081887	+	1	NA	NA	NA	36	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.160000	0.776119	
mm_154874.1	chrX	20688330	20688530	+	1	NA	NA	NA	4	NM_011049	18555	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	0.100000	0.666667	
mm_72928.1	chr8	91111981	91112181	+	1	NA	NA	NA	21946	NM_001302337	14339	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	0.010000	0.447761	
mm_64239.1	chr7	141701265	141701465	+	1	NA	NA	NA	11025	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.010000	0.522388	
mm_170688.1	chr2	130880746	130880946	+	1	NA	NA	NA	25550	NR_015523	613258	Mm.271990	NR_015523		A730017L22Rik	-	RIKEN cDNA A730017L22 gene	ncRNA	0.045000	0.527363	
mm_69063.1	chr7	126898136	126898336	-	1	NA	NA	NA	42	NM_026827	68742	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0.105000	0.686567	
mm_93722.1	chr10	119239643	119239843	-	1	NA	NA	NA	312	NM_027994	71902	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	0.115000	0.686567	
mm_3084.1	chr1	134405708	134405908	+	1	NA	NA	NA	-182	NM_028057	72017	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	0.035000	0.537313	
mm_56327.1	chr6	92534743	92534943	-	1	NA	NA	NA	18	NM_001134459	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.015000	0.587065	-62(GTCCCTTTAAGC,-,0.00),-60(CCCTTTAAGCTG,+,0.00)
mm_28700.1	chr3	95545275	95545475	-	1	NA	NA	NA	-14302	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.020000	0.527363	
mm_153368.1	chr19	40271755	40271955	-	1	NA	NA	NA	-239	NM_016861	54132	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	0.055000	0.507463	-58(CCTCTTAAACGG,+,0.00)
mm_91574.1	chr10	40128356	40128556	-	1	NA	NA	NA	13798	NM_028247	72472	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.025000	0.532338	
mm_27754.1	chr3	69596193	69596393	-	1	NA	NA	NA	2667	NM_020026	26879	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0.005000	0.522388	
mm_77432.1	chr8	121544199	121544399	-	1	NA	NA	NA	-89	NR_045903	72259	Mm.396206	NR_045903	ENSMUSG00000097424	1700030M09Rik	-	RIKEN cDNA 1700030M09 gene	ncRNA	0.020000	0.577114	
mm_136035.1	chr16	77421577	77421777	-	1	NA	NA	NA	92349	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.020000	0.512438	
mm_90746.1	chr10	5424244	5424444	-	1	NA	NA	NA	63970	NM_001347711	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.015000	0.517413	
mm_108243.1	chr12	78226255	78226455	+	1	NA	NA	NA	-300	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.075000	0.676617	
mm_81703.1	chr9	111271832	111272032	+	1	NA	NA	NA	87	NM_175266	77781	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	0.080000	0.661692	
mm_13638.1	chr2	114047465	114047665	+	1	NA	NA	NA	5310	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.010000	0.507463	
mm_75929.1	chr8	71511648	71511848	-	1	NA	NA	NA	21	NM_032398	84094	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	0.055000	0.631841	
mm_109671.1	chr12	113052474	113052674	+	1	NA	NA	NA	-21928	NM_029381	75671	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0.000000	0.368159	
mm_134324.1	chr16	16313334	16313534	-	1	NA	NA	NA	10469	NM_198246	70120	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	0.000000	0.313433	
mm_144352.1	chr18	15313362	15313562	+	1	NA	NA	NA	89537	NM_001308647	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.010000	0.348259	-34(GGGTATAAAAGC,-,0.00)
mm_145183.1	chr18	48046546	48046746	+	1	NA	NA	NA	1311	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.040000	0.467662	
mm_8824.1	chr1	162460125	162460325	-	1	NA	NA	NA	17805	NM_001038619	103967	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|mKIAA0820	dynamin 3	protein-coding	0.000000	0.328358	-64(GACTTTATAAGC,-,0.00)
mm_89591.1	chr10	95940592	95940792	+	1	NA	NA	NA	29	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.130000	0.805970	
mm_122960.1	chr14	54968325	54968525	-	1	NA	NA	NA	-362	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.005000	0.532338	
mm_136523.1	chr16	97459509	97459709	-	1	NA	NA	NA	3296	NM_010846	17857	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.010000	0.412935	14(CTCCATTAATGG,-,0.00),16(CCATTAATGGCC,+,0.00)
mm_52384.1	chr6	113237760	113237960	+	1	NA	NA	NA	17	NM_026849	97287	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	0.080000	0.691542	
mm_90675.1	chr10	128908816	128909016	+	1	NA	NA	NA	-3	NM_001042580	12512	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.015000	0.442786	-27(CTTTATATACAG,+,0.00)
mm_14285.1	chr2	128802220	128802420	+	1	NA	NA	NA	-15983	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.015000	0.442786	
mm_158622.1	chrX	152769525	152769725	-	1	NA	NA	NA	-139	NM_172441	110380	Mm.40796	NM_172441	ENSMUSG00000045180	Shroom2	4832440C16|Apxl|C630003H05Rik|Shrm2	shroom family member 2	protein-coding	0.105000	0.711443	
mm_139060.1	chr17	46428840	46429040	+	1	NA	NA	NA	-2	NM_053250	114570	Mm.25168	NM_053250	ENSMUSG00000023968	Crip3	TLP|TLP-A|TLP-B|Tlmp	cysteine-rich protein 3	protein-coding	0.035000	0.557214	
mm_94397.1	chr11	5574062	5574262	+	1	NA	NA	NA	4478	NM_023816	76389	Mm.67300	NM_023816	ENSMUSG00000020481	Ankrd36	1700008J08Rik|1700012M14Rik|Ankrd48	ankyrin repeat domain 36	protein-coding	0.020000	0.447761	
mm_87709.1	chr10	60003149	60003349	+	1	NA	NA	NA	-78	NM_001199187	69090	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0.065000	0.572139	
mm_79165.1	chr9	47848134	47848334	+	1	NA	NA	NA	-30026	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.030000	0.527363	
mm_30393.1	chr3	152248166	152248366	-	1	NA	NA	NA	18054	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.005000	0.378109	
mm_28552.1	chr3	93279662	93279862	-	1	NA	NA	NA	-39987	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.005000	0.363184	
mm_148785.1	chr19	6114365	6114565	+	1	NA	NA	NA	4121	NM_133678	66406	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.015000	0.522388	
mm_14903.1	chr2	150257437	150257637	+	1	NA	NA	NA	20	NM_001142410	100216455	Mm.484816	NM_001142410	ENSMUSG00000079008	Gm14124	EG640962|ENSMUSG00000074735|Gm10749|OTTMUSG00000015734	predicted gene 14124	protein-coding	0.015000	0.502488	
mm_79726.1	chr9	62341264	62341464	+	1	NA	NA	NA	21	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.110000	0.626866	
mm_172363.1	chr7	120370175	120370375	-	1	NA	NA	NA	-39372	NM_001278943	233810		NM_001278943	ENSMUSG00000051900	Abca16	AY243472	ATP-binding cassette, sub-family A (ABC1), member 16	protein-coding	0.000000	0.457711	
mm_155926.1	chrX	103414371	103414571	+	1	NA	NA	NA	4	NM_009440	22127	Mm.358644	NM_009440	ENSMUSG00000031329	Tsx	AV207184	testis specific X-linked gene	protein-coding	0.025000	0.557214	
mm_146487.1	chr18	90510207	90510407	+	1	NA	NA	NA	153	NM_198295	67988	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.090000	0.676617	
mm_143768.1	chr17	81648752	81648952	-	1	NA	NA	NA	89535	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.030000	0.507463	
mm_108245.1	chr12	78226319	78226519	+	1	NA	NA	NA	-236	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.095000	0.701493	
mm_31735.1	chr4	63151368	63151568	+	1	NA	NA	NA	2704	NM_007443	11699	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.020000	0.487562	
mm_94438.1	chr11	6292580	6292780	+	1	NA	NA	NA	122	NM_001252288	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.035000	0.472637	
mm_44047.1	chr5	147860543	147860743	+	1	NA	NA	NA	15	NM_025624	66537	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.115000	0.671642	
mm_72544.1	chr8	83997534	83997734	+	1	NA	NA	NA	-38	NM_001081415	666704	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.160000	0.865672	
mm_29649.1	chr3	122245124	122245324	-	1	NA	NA	NA	-333	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.040000	0.452736	
mm_46712.1	chr5	110387022	110387222	-	1	NA	NA	NA	5	NM_028596	381668	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.125000	0.766169	
mm_37218.1	chr4	117914893	117915093	-	1	NA	NA	NA	6	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	0.105000	0.706468	
mm_31332.1	chr4	46452092	46452292	+	1	NA	NA	NA	1266	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.180000	0.840796	
mm_38189.1	chr4	135337816	135338016	-	1	NA	NA	NA	15298	NM_016799	51796	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.055000	0.547264	
mm_132573.1	chr16	38177606	38177806	+	1	NA	NA	NA	-88446	NR_033221	414072	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.005000	0.333333	
mm_60895.1	chr7	46397672	46397872	+	1	NA	NA	NA	1304	NM_001112739	16502	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.155000	0.701493	
mm_47279.1	chr5	122050125	122050325	-	1	NA	NA	NA	-374	NM_001312908	13048	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2|ENSMUSG00000072641	cut-like homeobox 2	protein-coding	0.170000	0.766169	
mm_133613.1	chr16	91546981	91547181	+	1	NA	NA	NA	-13	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.150000	0.810945	
mm_33424.1	chr4	130047779	130047979	+	1	NA	NA	NA	39	NM_028266	107581	Mm.41860	NM_028266	ENSMUSG00000040690	Col16a1	2700007F12Rik|A530052M23Rik|AI838662|CA1F	collagen, type XVI, alpha 1	protein-coding	0.060000	0.666667	
mm_6182.1	chr1	65103271	65103471	-	1	NA	NA	NA	-8	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.010000	0.542289	
mm_173096.1	chrX	151958118	151958318	-	1	NA	NA	NA	-43678	NM_016763	15108	Mm.6994	NM_016763	ENSMUSG00000025260	Hsd17b10	17bHSD10|Ads9|ERAB|Hadh2	hydroxysteroid (17-beta) dehydrogenase 10	protein-coding	0.025000	0.472637	
mm_159424.1	chr3	108398708	108398908	-	1	NA	NA	NA	14970	NM_019976	56742	Mm.389499	NM_019976	ENSMUSG00000068744	Psrc1	5430413I02Rik|AL033312|Dda3	proline/serine-rich coiled-coil 1	protein-coding	0.030000	0.542289	
mm_145321.1	chr18	54771296	54771496	+	1	NA	NA	NA	159652	NR_045400	328957	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	0.015000	0.487562	
mm_57248.1	chr6	123283292	123283492	-	1	NA	NA	NA	6479	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.363184	63(CTTTTTAGACTG,+,0.00)
mm_28613.1	chr3	94838247	94838447	-	1	NA	NA	NA	780	NM_172683	229584	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	0.045000	0.547264	
mm_22759.1	chr3	19989058	19989258	+	1	NA	NA	NA	32104	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.005000	0.437811	
mm_173059.1	chrX	126307221	126307421	+	1	NA	NA	NA	526683	NM_177705	237029	Mm.60998	NM_177705	ENSMUSG00000058670	4932411N23Rik	-	RIKEN cDNA 4932411N23 gene	protein-coding	0.000000	0.492537	
mm_52216.1	chr6	103510679	103510879	+	1	NA	NA	NA	-97	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.025000	0.507463	
mm_110340.1	chr12	36042357	36042557	-	1	NA	NA	NA	21	NM_025359	66109	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0.125000	0.751244	
mm_126563.1	chr15	82169896	82170096	+	1	NA	NA	NA	22727	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.045000	0.641791	
mm_135033.1	chr16	32867414	32867614	-	1	NA	NA	NA	852	NM_001200038	100502698	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Kiaa0226|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	0.010000	0.487562	
mm_6428.1	chr1	73947969	73948169	-	1	NA	NA	NA	-83603	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.025000	0.512438	-2(TCTTCTAAAAGG,-,0.00)
mm_141781.1	chr17	34296013	34296213	-	1	NA	NA	NA	-8342	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.035000	0.497512	
mm_35847.1	chr4	48442030	48442230	-	1	NA	NA	NA	31292	NM_172304	269536	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0.020000	0.323383	
mm_110091.1	chr12	25095988	25096188	-	1	NA	NA	NA	4	NM_010496	15902	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.080000	0.641791	-36(GCACATAAAAGA,-,0.00)
mm_29541.1	chr3	116712119	116712319	-	1	NA	NA	NA	61	NM_144902	229782	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	0.160000	0.766169	
mm_111153.1	chr12	83424796	83424996	-	1	NA	NA	NA	62840	NM_001267626	70127	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0.030000	0.557214	-85(CCATATATAACC,+,0.00)
mm_85791.1	chr9	109542975	109543175	-	1	NA	NA	NA	25187	NM_199036	382105	Mm.335468	NM_199036	ENSMUSG00000074060	Fbxw15	Fbxo12J	F-box and WD-40 domain protein 15	protein-coding	0.035000	0.532338	-34(GTGCATTTAAGC,-,0.00)
mm_28612.1	chr3	94786380	94786580	-	1	NA	NA	NA	35	NM_001293727	70737	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	0.070000	0.671642	
mm_52299.1	chr6	108794802	108795002	+	1	NA	NA	NA	11843	NM_026011	67166	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0.020000	0.422886	
mm_28416.1	chr3	90389870	90390070	-	1	NA	NA	NA	-32	NM_011988	26568	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	0.110000	0.726368	
mm_73036.1	chr8	94214488	94214688	+	1	NA	NA	NA	-13	NM_172410	71805	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0.130000	0.701493	
mm_123027.1	chr14	55490507	55490707	-	1	NA	NA	NA	-486	NM_001024645	268747	Mm.151577	NM_001024645	ENSMUSG00000022211	Carmil3	Lrrc16b|mFLJ00240	capping protein regulator and myosin 1 linker 3	protein-coding	0.050000	0.497512	
mm_72792.1	chr8	86914685	86914885	+	1	NA	NA	NA	-29527	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.005000	0.452736	
mm_68688.1	chr7	119476703	119476903	-	1	NA	NA	NA	2459	NM_009470	22242	Mm.10826	NM_009470	ENSMUSG00000030963	Umod	THP|Urehd1|urehr4	uromodulin	protein-coding	0.050000	0.592040	
mm_137401.1	chr17	25865471	25865671	+	1	NA	NA	NA	3167	NM_026633	68241	Mm.328870	NM_026633	ENSMUSG00000025732	Fam195a	9530058B02Rik|Mcrip2	family with sequence similarity 195, member A	protein-coding	0.050000	0.686567	
mm_89331.1	chr10	87933103	87933303	+	1	NA	NA	NA	-33468	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.472637	
mm_11322.1	chr2	30415954	30416154	+	1	NA	NA	NA	4	NM_138748	110854	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.120000	0.696517	
mm_78364.1	chr9	26924380	26924580	+	1	NA	NA	NA	-1399	NM_001281475	382064	Mm.335028	NM_001177509	ENSMUSG00000079644	Gm1110	-	predicted gene 1110	protein-coding	0.000000	0.437811	
mm_63915.1	chr7	139235770	139235970	+	1	NA	NA	NA	-12612	NM_001033206	101631	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.010000	0.562189	
mm_119450.1	chr14	46889233	46889433	+	1	NA	NA	NA	6368	NM_001037221	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.015000	0.477612	
mm_152976.1	chr19	29463593	29463793	-	1	NA	NA	NA	52774	NM_021396	58205	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.015000	0.457711	
mm_74084.1	chr8	122549248	122549448	+	1	NA	NA	NA	1981	NM_001037298	234839	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	0.000000	0.502488	
mm_45882.1	chr5	88328422	88328622	-	1	NA	NA	NA	11210	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.000000	0.432836	
mm_56848.1	chr6	117907657	117907857	-	1	NA	NA	NA	-47	NM_001166428	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.135000	0.736318	
mm_117409.1	chr13	74009215	74009415	-	1	NA	NA	NA	-104	NM_182839	72948	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0.075000	0.696517	
mm_131250.1	chr16	10545309	10545509	+	1	NA	NA	NA	70	NM_001204229	74374	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	0.125000	0.686567	
mm_136379.1	chr16	92825827	92826027	-	1	NA	NA	NA	147	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.025000	0.452736	
mm_97170.1	chr11	75513465	75513665	+	1	NA	NA	NA	24	NM_001004157	380713	Mm.10486	NM_001004157	ENSMUSG00000038188	Scarf1	AA986099|SREC|SREC-I|mKIAA0149	scavenger receptor class F, member 1	protein-coding	0.020000	0.626866	
mm_137314.1	chr17	24885910	24886110	+	1	NA	NA	NA	340	NM_011956	26426	Mm.36718	NM_011956	ENSMUSG00000039183	Nubp2	D17Wsu11e	nucleotide binding protein 2	protein-coding	0.035000	0.522388	
mm_57820.1	chr6	129462690	129462890	-	1	NA	NA	NA	9989	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.422886	
mm_95077.1	chr11	32642734	32642934	+	1	NA	NA	NA	279	NM_001271347	103583	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.130000	0.746269	
mm_62376.1	chr7	100706618	100706818	+	1	NA	NA	NA	16	NM_178764	319604	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0.085000	0.671642	
mm_75190.1	chr8	38473628	38473828	-	1	NA	NA	NA	187780	NM_145841	244431	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding	0.000000	0.338308	
mm_159835.1	chr5	130073173	130073373	+	1	NA	NA	NA	-53	NM_013837	22021	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0.015000	0.492537	
mm_142812.1	chr17	51179196	51179396	-	1	NA	NA	NA	56	NM_028162	72238	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.110000	0.681592	
mm_154438.1	chrM	1132	1332	-	1	NA	NA	NA	NA	NA									0.010000	0.303483	
mm_65025.1	chr7	18431899	18432099	-	1	NA	NA	NA	56	NM_054063	114871	Mm.362025	NM_054063	ENSMUSG00000030373	Psg28	cea16	pregnancy-specific glycoprotein 28	protein-coding	0.005000	0.502488	
mm_12423.1	chr2	70563224	70563424	+	1	NA	NA	NA	33	NR_040496	68986	Mm.437697	NR_040496	ENSMUSG00000087264	Gad1os	1500002O10Rik	glutamate decarboxylase 1, opposite strand	ncRNA	0.050000	0.626866	
mm_65929.1	chr7	30322232	30322432	-	1	NA	NA	NA	43	NM_001033140	68332	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	0.130000	0.721393	
mm_24837.1	chr3	95659211	95659411	+	1	NA	NA	NA	590	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.135000	0.726368	
mm_137653.1	chr17	28558718	28558918	+	1	NA	NA	NA	-317	NR_105935	102465585		NR_105935	ENSMUSG00000099152	Mir6969	Gm27305|mmu-mir-6969	microRNA 6969	ncRNA	0.015000	0.577114	
mm_160877.1	chr11	69100073	69100273	+	1	NA	NA	NA	15	NM_001159367	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.050000	0.577114	
mm_125033.1	chr15	25754785	25754985	+	1	NA	NA	NA	-88413	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.030000	0.562189	
mm_90759.1	chr10	5550523	5550723	-	1	NA	NA	NA	69	NM_153399	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.080000	0.696517	
mm_160749.1	chr10	81420613	81420813	-	1	NA	NA	NA	-4416	NR_106141	102465778		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.090000	0.606965	
mm_27727.1	chr3	69004475	69004675	-	1	NA	NA	NA	-5	NM_026641	68259	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	0.070000	0.587065	
mm_106804.1	chr12	5642959	5643159	+	1	NA	NA	NA	266557	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	0.020000	0.492537	
mm_24829.1	chr3	95653832	95654032	+	1	NA	NA	NA	-4789	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.025000	0.502488	
mm_168896.1	chr12	51377490	51377690	+	1	NA	NA	NA	77	NM_029825	76983	Mm.216511	NM_029825	ENSMUSG00000020952	Scfd1	3110021P21Rik|RA410|STXBP1L2	Sec1 family domain containing 1	protein-coding	0.070000	0.646766	
mm_60889.1	chr7	46396788	46396988	+	1	NA	NA	NA	420	NM_001112739	16502	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.105000	0.746269	
mm_151689.1	chr19	4321458	4321658	-	1	NA	NA	NA	-15336	NM_001290818	110355	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.025000	0.437811	
mm_148470.1	chr19	4097304	4097504	+	1	NA	NA	NA	53	NM_026373	52004	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0.085000	0.701493	
mm_143957.1	chr17	86957910	86958110	-	1	NA	NA	NA	-5101	NM_145491	104215	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.035000	0.517413	
mm_137200.1	chr17	23880779	23880979	+	1	NA	NA	NA	3	NM_019910	13184	Mm.371556	NM_019910	ENSMUSG00000096445	Dcpp1	BC005655|C86550|Dcpp|Dcpp-1|p20	demilune cell and parotid protein 1	protein-coding	0.005000	0.587065	-34(AAGCATATAAGG,-,0.00),-32(GCATATAAGGGG,+,0.00)
mm_92465.1	chr10	77970470	77970670	-	1	NA	NA	NA	-698	NM_138301	28240	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.005000	0.512438	
mm_117503.1	chr13	78200135	78200335	-	1	NA	NA	NA	-1362	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.010000	0.547264	
mm_129078.1	chr15	75831689	75831889	-	1	NA	NA	NA	10119	NM_172121	223642	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0.005000	0.432836	
mm_104897.1	chr11	99610320	99610520	-	1	NA	NA	NA	-231	NM_001099346	100041488	Mm.465212	NM_001099346	ENSMUSG00000058725	Gm11937	-	predicted gene 11937	protein-coding	0.015000	0.378109	-43(CCATAAATAGCA,+,0.00)
mm_129025.1	chr15	74958646	74958846	-	1	NA	NA	NA	3640	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.005000	0.582090	-29(GGACCTAAAAGG,-,0.00)
mm_100447.1	chr11	119491571	119491771	+	1	NA	NA	NA	51	NM_177394	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.080000	0.646766	
mm_117187.1	chr13	63553223	63553423	-	1	NA	NA	NA	12412	NM_008957	19206	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes	patched 1	protein-coding	0.005000	0.432836	
mm_212.1	chr1	16665127	16665327	+	1	NA	NA	NA	36	NM_026392	70397	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	0.100000	0.646766	
mm_135547.1	chr16	49801010	49801210	-	1	NA	NA	NA	-54544	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.010000	0.412935	
mm_166986.1	chr7	45715309	45715509	+	1	NA	NA	NA	-202	NM_020011	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.065000	0.562189	
mm_88547.1	chr10	78577002	78577202	+	1	NA	NA	NA	2602	NM_173751	216136	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0.025000	0.552239	
mm_26002.1	chr3	135237952	135238152	+	1	NA	NA	NA	25489	NM_173762	229841	Mm.161470	NM_173762	ENSMUSG00000045328	Cenpe	312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10	centromere protein E	protein-coding	0.005000	0.467662	
mm_9265.1	chr1	171632141	171632341	-	1	NA	NA	NA	9659	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.442786	-24(GTCCTTTAAAGC,-,0.00),-23(TCCTTTAAAGCA,+,0.00),-22(CCTTTAAAGCAG,+,0.00)
mm_92539.1	chr10	79637816	79638016	-	1	NA	NA	NA	2	NM_001024539	216148	Mm.39424	NM_001024539	ENSMUSG00000020312	Shc2	6720466E06|SCK|ShcB|Sli	SHC (Src homology 2 domain containing) transforming protein 2	protein-coding	0.140000	0.776119	
mm_150622.1	chr19	41263677	41263877	+	1	NA	NA	NA	227	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.150000	0.781095	
mm_121071.1	chr14	98110132	98110332	+	1	NA	NA	NA	59533	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.000000	0.303483	
mm_32996.1	chr4	120483201	120483401	+	1	NA	NA	NA	-48930	NM_177570	194219	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	0.000000	0.333333	-68(ATCTATAAATGC,-,0.00)
mm_100656.1	chr11	3193050	3193250	-	1	NA	NA	NA	313	NM_030207	78887	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.060000	0.587065	
mm_133023.1	chr16	57121633	57121833	+	1	NA	NA	NA	19	NM_138599	28185	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70 homolog A (yeast)	protein-coding	0.110000	0.701493	
mm_166067.1	chr4	134548264	134548464	+	1	NA	NA	NA	3802	NM_029100	74777	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	0.025000	0.497512	
mm_95931.1	chr11	58379556	58379756	+	1	NA	NA	NA	624	NM_001083884	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.000000	0.517413	
mm_54557.1	chr6	37299823	37300023	-	1	NA	NA	NA	53	NM_001081206	320127	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.095000	0.721393	
mm_271.1	chr1	21218568	21218768	+	1	NA	NA	NA	93	NM_029398	75712	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	0.040000	0.636816	
mm_63429.1	chr7	127478458	127478658	+	1	NA	NA	NA	-6663	NM_010183	14123	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.040000	0.517413	-74(CTCCTTAAAGGG,-,0.00),-72(CCTTAAAGGGGT,+,0.00),-32(CAGTCTTAAAGG,-,0.00)
mm_146727.1	chr18	15151099	15151299	-	1	NA	NA	NA	247	NM_134112	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.115000	0.651741	
mm_143613.1	chr17	78736540	78736740	-	1	NA	NA	NA	-80	NM_011500	268980	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	0.115000	0.761194	
mm_58909.1	chr7	17203438	17203638	+	1	NA	NA	NA	61	NM_054064	114872	Mm.322280	NM_054064	ENSMUSG00000023159	Psg29	AA102956|AA409969|cea17	pregnancy-specific glycoprotein 29	protein-coding	0.000000	0.487562	
mm_54271.1	chr6	28867616	28867816	-	1	NA	NA	NA	-35969	NM_138682	192198	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.010000	0.542289	
mm_74120.1	chr8	123117267	123117467	+	1	NA	NA	NA	-7	NM_170684	102278	Mm.36434	NM_170684	ENSMUSG00000034796	Cpne7	AW047065	copine VII	protein-coding	0.120000	0.751244	
mm_22378.1	chr2	181156678	181156878	-	1	NA	NA	NA	237	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.090000	0.646766	
mm_24161.1	chr3	88531437	88531637	+	1	NA	NA	NA	-858	NM_001029890	72640	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0.090000	0.711443	
mm_100232.1	chr11	117200241	117200441	+	1	NA	NA	NA	680	NM_001113486	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.015000	0.527363	
mm_159545.1	chr4	88849919	88850119	+	1	NA	NA	NA	-68	NM_010502	15962	Mm.57127	NM_010502	ENSMUSG00000095498	Ifna1	Ifa1	interferon alpha 1	protein-coding	0.000000	0.462687	-35(CCCTATTTAAGA,-,0.00)
mm_9105.1	chr1	170110361	170110561	-	1	NA	NA	NA	-21517	NM_022563	18214	Mm.229249	NM_022563	ENSMUSG00000026674	Ddr2	AW495251|Ntrkr3|tyro10	discoidin domain receptor family, member 2	protein-coding	0.035000	0.537313	
mm_96367.1	chr11	67200043	67200243	+	1	NA	NA	NA	29	NM_030679	17879	Mm.477065	NM_030679	ENSMUSG00000056328	Myh1	A530084A17Rik|IId|IId/x|MHC-2X/D|MHC2X/D|MYHC-IIX|MdMs|MyHC-IId/x|MyHC-IIx/d|Myhs-f|Myhs-f2|Myhsf2	myosin, heavy polypeptide 1, skeletal muscle, adult	protein-coding	0.010000	0.502488	-76(TCCTATAAAAGT,-,0.00),-35(CCTCATAAAGCT,+,0.00)
mm_146042.1	chr18	69592898	69593098	+	1	NA	NA	NA	247277	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.005000	0.353234	
mm_91120.1	chr10	19505994	19506194	-	1	NA	NA	NA	-85855	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.020000	0.477612	
mm_27456.1	chr3	52092634	52092834	-	1	NA	NA	NA	12272	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.010000	0.452736	
mm_165690.1	chr3	93277517	93277717	+	1	NA	NA	NA	-42132	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.005000	0.402985	
mm_26528.1	chr3	146011982	146012182	+	1	NA	NA	NA	24212	NM_001166064	214804	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	0.000000	0.407960	
mm_5836.1	chr1	52947898	52948098	-	1	NA	NA	NA	4842	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.015000	0.432836	
mm_2279.1	chr1	91308523	91308723	+	1	NA	NA	NA	10285	NM_016717	50880	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	0.035000	0.532338	
mm_47035.1	chr5	115922069	115922269	-	1	NA	NA	NA	76513	NM_007708	12704	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0.040000	0.636816	
mm_44773.1	chr5	31998781	31998981	-	1	NA	NA	NA	-137591	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.000000	0.388060	
mm_66096.1	chr7	31002702	31002902	-	1	NA	NA	NA	20881	NM_001242647	76415	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.020000	0.512438	
mm_53852.1	chr6	149146011	149146211	+	1	NA	NA	NA	4598	NM_177101	320204	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	0.000000	0.427861	
mm_89600.1	chr10	95980248	95980448	+	1	NA	NA	NA	39685	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.040000	0.472637	
mm_145210.1	chr18	50030616	50030816	+	1	NA	NA	NA	-22566	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.020000	0.402985	67(CTATTAATAGAC,+,0.00)
mm_9388.1	chr1	172214943	172215143	-	1	NA	NA	NA	4852	NM_009813	12372	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.010000	0.527363	
mm_48926.1	chr6	4510663	4510863	+	1	NA	NA	NA	5145	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.015000	0.537313	
mm_55304.1	chr6	54964605	54964805	-	1	NA	NA	NA	6956	NM_001171007	107607	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.010000	0.552239	
mm_167559.1	chr9	37488971	37489171	+	1	NA	NA	NA	-250	NM_146222	235184	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	0.060000	0.666667	
mm_53499.1	chr6	135362546	135362746	+	1	NA	NA	NA	-285	NM_010128	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.030000	0.502488	
mm_117851.1	chr13	98695588	98695788	-	1	NA	NA	NA	-857	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.010000	0.497512	
mm_82887.1	chr9	32541248	32541448	-	1	NA	NA	NA	104	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.065000	0.562189	
mm_82253.1	chr9	4795976	4796176	-	1	NA	NA	NA	158	NM_001113180	14802	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.035000	0.606965	62(GGGCATAAAAAG,-,0.00)
mm_108165.1	chr12	76370479	76370679	+	1	NA	NA	NA	313	NM_178744	268564	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.135000	0.756219	
mm_83768.1	chr9	52048623	52048823	-	1	NA	NA	NA	-18	NR_023357	629557	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.170000	0.781095	
mm_170563.1	chr19	46739175	46739375	+	1	NA	NA	NA	-22334	NM_033569	94219	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0.020000	0.552239	
mm_106709.1	chr12	3806909	3807109	+	1	NA	NA	NA	29	NM_007872	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.170000	0.815920	
mm_29188.1	chr3	106547488	106547688	-	1	NA	NA	NA	-210	NM_001286986	67171	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0.105000	0.716418	
mm_69406.1	chr7	132317273	132317473	-	1	NA	NA	NA	-218	NM_029935	77590	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.050000	0.537313	
mm_45099.1	chr5	44644850	44645050	-	1	NA	NA	NA	154796	NM_001347349	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0.005000	0.422886	
mm_22661.1	chr3	14871630	14871830	+	1	NA	NA	NA	8192	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.015000	0.552239	
mm_11651.1	chr2	34961790	34961990	+	1	NA	NA	NA	-118	NM_001326601	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.015000	0.497512	
mm_150336.1	chr19	34575577	34575777	+	1	NA	NA	NA	-7852	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.010000	0.452736	
mm_153941.1	chr19	47507754	47507954	-	1	NA	NA	NA	-5128	NR_045322	100503104	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0.020000	0.487562	
mm_154418.1	chrM	15982	16182	+	1	NA	NA	NA	NA	NA									0.015000	0.393035	
mm_92293.1	chr10	72589248	72589448	-	1	NA	NA	NA	-65498	NM_025635	52696	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	0.000000	0.447761	
mm_56220.1	chr6	89534963	89535163	-	1	NA	NA	NA	60589	NM_025351	66098	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	0.000000	0.407960	
mm_73369.1	chr8	105613156	105613356	+	1	NA	NA	NA	-2210	NR_035492	100316712		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0.075000	0.686567	
mm_122570.1	chr14	50807529	50807729	-	1	NA	NA	NA	142	NR_002142	85029		NR_002142	ENSMUSG00000092837	Rpph1	Gm24821|H1RNA|Rmrp5|Rpr	ribonuclease P RNA component H1	ncRNA	0.080000	0.686567	
mm_157766.1	chrX	73695146	73695346	-	1	NA	NA	NA	20958	NM_012060	27061	Mm.17	NM_012060	ENSMUSG00000002015	Bcap31	Bap31	B cell receptor associated protein 31	protein-coding	0.010000	0.402985	
mm_132856.1	chr16	48303780	48303980	+	1	NA	NA	NA	-6394	NM_028615	73703	Mm.27857	NM_028615	ENSMUSG00000072419	Dppa2	2410088E07Rik|C80932|D19Mgi18|ECAT15-2	developmental pluripotency associated 2	protein-coding	0.015000	0.462687	
mm_57334.1	chr6	124741290	124741490	-	1	NA	NA	NA	-311	NM_013535	14790	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.040000	0.442786	-91(CCTTTACAAGCG,+,0.00),-56(GTTTTAATAGTC,+,0.00)
mm_165056.1	chr19	41388919	41389119	-	1	NA	NA	NA	-3949	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.005000	0.467662	-34(GGCTTTTAATAG,-,0.00),-32(CTTTTAATAGGA,+,0.00)
mm_131485.1	chr16	17222191	17222391	+	1	NA	NA	NA	-11296	NM_178922	58180	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0.090000	0.601990	
mm_140052.1	chr17	74528407	74528607	+	1	NA	NA	NA	212	NM_007566	12211	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.100000	0.701493	
mm_129086.1	chr15	75905269	75905469	-	1	NA	NA	NA	3975	NM_001285433	66656	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0.010000	0.601990	
mm_61781.1	chr7	83660587	83660787	+	1	NA	NA	NA	28670	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.030000	0.532338	-9(GCTTAAAGAGAG,+,0.00)
mm_68507.1	chr7	111082435	111082635	-	1	NA	NA	NA	495	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.160000	0.761194	
mm_49954.1	chr6	40628492	40628692	+	1	NA	NA	NA	-239	NM_001171003	232714	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding	0.015000	0.427861	
mm_25907.1	chr3	131112443	131112643	+	1	NA	NA	NA	-248	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.090000	0.616915	
mm_151798.1	chr19	5423998	5424198	-	1	NA	NA	NA	881	NM_024176	66556	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	0.030000	0.606965	
mm_162992.1	chr11	26593658	26593858	-	1	NA	NA	NA	162	NM_027260	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.055000	0.696517	
mm_46377.1	chr5	103885969	103886169	-	1	NA	NA	NA	25160	NM_178741	246293	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0.035000	0.527363	
mm_60229.1	chr7	43634557	43634757	+	1	NA	NA	NA	-82	NM_028236	72431	Mm.158821	NM_028236	ENSMUSG00000030472	Ceacam18	2010110O04Rik	carcinoembryonic antigen-related cell adhesion molecule 18	protein-coding	0.025000	0.497512	
mm_54800.1	chr6	41693202	41693402	-	1	NA	NA	NA	8871	NM_029671	76606	Mm.272520	NM_029671	ENSMUSG00000029867	1700034O15Rik	-	RIKEN cDNA 1700034O15 gene	protein-coding	0.005000	0.343284	
mm_20781.1	chr2	143988910	143989110	-	1	NA	NA	NA	22253	NM_133626	81910	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.000000	0.517413	
mm_147457.1	chr18	46574397	46574597	-	1	NA	NA	NA	36	NM_173394	225471	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.035000	0.651741	
mm_91457.1	chr10	34044197	34044397	-	1	NA	NA	NA	16	NM_001081165	270711	Mm.303077	NM_001081165	ENSMUSG00000039508	Fam26d	4732454E20Rik|AI586164|Gm643	family with sequence similarity 26, member D	protein-coding	0.015000	0.447761	
mm_3270.1	chr1	136466257	136466457	+	1	NA	NA	NA	-1491	NM_001287179	381293	Mm.458468	NM_001081258	ENSMUSG00000041498	Kif14	D1Ertd367e|E130203M01	kinesin family member 14	protein-coding	0.095000	0.641791	
mm_66858.1	chr7	52995107	52995307	-	1	NA	NA	NA	896682	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0.005000	0.373134	
mm_139780.1	chr17	65783042	65783242	+	1	NA	NA	NA	-213	NM_001114131	70351	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0.180000	0.840796	
mm_24259.1	chr3	89187269	89187469	+	1	NA	NA	NA	4144	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.060000	0.716418	
mm_75521.1	chr8	56229059	56229259	-	1	NA	NA	NA	-65393	NM_008278	15446	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.000000	0.323383	
mm_66809.1	chr7	47252820	47253020	-	1	NA	NA	NA	-72	NM_001288801	668725	Mm.436563	NM_001177566	ENSMUSG00000074111	Mrgpra9	EG668725|MrgA9	MAS-related GPR, member A9	protein-coding	0.005000	0.412935	
mm_14401.1	chr2	130044519	130044719	+	1	NA	NA	NA	-28211	NR_105757	102466628		NR_105757	ENSMUSG00000098347	Mir6339	Gm27848|mmu-mir-6339	microRNA 6339	ncRNA	0.025000	0.567164	
mm_72520.1	chr8	83972890	83973090	+	1	NA	NA	NA	12	NM_008854	18747	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0.095000	0.746269	
mm_102670.1	chr11	65174288	65174488	-	1	NA	NA	NA	-11427	NM_175003	216831	Mm.134338	NM_175003	ENSMUSG00000033389	Arhgap44	6330543G20|AI840762|AU040829|AW493732|Rich2	Rho GTPase activating protein 44	protein-coding	0.000000	0.402985	
mm_167522.1	chr9	20898481	20898681	-	1	NA	NA	NA	9	NM_016876	53356	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0.105000	0.681592	
mm_75224.1	chr8	39613983	39614183	-	1	NA	NA	NA	28595	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.005000	0.353234	
mm_60129.1	chr7	36773047	36773247	+	1	NA	NA	NA	75029	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.020000	0.338308	
mm_34555.1	chr4	149627190	149627390	+	1	NA	NA	NA	28277	NR_105990	102465983		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.045000	0.522388	-66(GCTTTAAAATTC,+,0.00)
mm_152958.1	chr19	29334549	29334749	-	1	NA	NA	NA	21	NM_011272	19773	Mm.5033	NM_011272	ENSMUSG00000039097	Rln1	Rln|rlx	relaxin 1	protein-coding	0.025000	0.597015	-34(GGATATAAAAGC,-,0.00)
mm_116907.1	chr13	55474421	55474621	-	1	NA	NA	NA	3255	NR_105909	102465569		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0.020000	0.432836	
mm_97552.1	chr11	78929682	78929882	+	1	NA	NA	NA	4491	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.447761	
mm_57228.1	chr6	123282518	123282718	-	1	NA	NA	NA	7253	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.005000	0.238806	
mm_88621.1	chr10	79859346	79859546	+	1	NA	NA	NA	-3141	NR_105875	102465549		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	0.035000	0.616915	40(CCTTTTCTACCC,+,0.00)
mm_100059.1	chr11	115307049	115307249	+	1	NA	NA	NA	-14	NM_172801	237987	Mm.44542	NM_172801	ENSMUSG00000050201	Otop2	4732464P15	otopetrin 2	protein-coding	0.020000	0.572139	
mm_40242.1	chr5	37983590	37983790	+	1	NA	NA	NA	-55540	NM_001289536	71116	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0.005000	0.467662	
mm_112246.1	chr12	113578965	113579165	-	1	NA	NA	NA	35157	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.005000	0.517413	
mm_106351.1	chr11	118393449	118393649	-	1	NA	NA	NA	8382	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.020000	0.537313	
mm_94514.1	chr11	8594744	8594944	+	1	NA	NA	NA	69691	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.010000	0.442786	-39(CTGTATTAAAGG,-,0.00)
mm_63026.1	chr7	121035540	121035740	+	1	NA	NA	NA	1195	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.020000	0.447761	
mm_142740.1	chr17	48408919	48409119	-	1	NA	NA	NA	801	NM_001110832	18044	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	0.085000	0.646766	
mm_132451.1	chr16	36035269	36035469	+	1	NA	NA	NA	-5821	NM_027113	69544	Mm.37802	NM_027113	ENSMUSG00000034379	Wdr5b	2310009C03Rik|AI606931	WD repeat domain 5B	protein-coding	0.005000	0.378109	68(CCTTTTAAATCT,+,0.00)
mm_19416.1	chr2	91717327	91717527	-	1	NA	NA	NA	6477	NM_178724	241547	Mm.130331	NM_178724	ENSMUSG00000027243	Harbi1	D230010M03Rik	harbinger transposase derived 1	protein-coding	0.000000	0.393035	
mm_71540.1	chr8	47288311	47288511	+	1	NA	NA	NA	991	NM_001286376	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.080000	0.661692	
mm_8741.1	chr1	160247554	160247754	-	1	NA	NA	NA	-34762	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0.030000	0.532338	
mm_5507.1	chr1	37429976	37430176	-	1	NA	NA	NA	27	NM_198006	76178	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	0.105000	0.651741	
mm_149575.1	chr19	12846678	12846878	+	1	NA	NA	NA	-14999	NM_146702	258697	Mm.223132	NM_146702	ENSMUSG00000046272	Olfr1444	MOR202-4	olfactory receptor 1444	protein-coding	0.010000	0.447761	-95(CTTTTTAGAGGG,+,0.00),-24(CAGTTTAAAAAC,-,0.00)
mm_99420.1	chr11	102316822	102317022	+	1	NA	NA	NA	365	NM_001044383	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.140000	0.776119	
mm_100748.1	chr11	4160157	4160357	-	1	NA	NA	NA	36	NM_177616	216516	Mm.386854	NM_177616	ENSMUSG00000051427	Ccdc157	4930562D19Rik|mKIAA1656	coiled-coil domain containing 157	protein-coding	0.095000	0.661692	
mm_12063.1	chr2	59471106	59471306	+	1	NA	NA	NA	-13447	NM_029723	76747	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0.030000	0.467662	
mm_113549.1	chr13	38149350	38149550	+	1	NA	NA	NA	-1844	NM_023842	109620	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding	0.010000	0.457711	
mm_100270.1	chr11	117654711	117654911	+	1	NA	NA	NA	522	NM_198022	217351	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.145000	0.766169	
mm_12936.1	chr2	85099065	85099265	+	1	NA	NA	NA	-12704	NR_040504	74687	Mm.66996	NR_040504	ENSMUSG00000086969	4930443O20Rik	-	RIKEN cDNA 4930443O20 gene	ncRNA	0.020000	0.542289	
mm_18967.1	chr2	76808913	76809113	-	1	NA	NA	NA	133698	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.025000	0.477612	
mm_9849.1	chr1	184732368	184732568	-	1	NA	NA	NA	25	NM_008250	15284	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.075000	0.507463	
mm_861.1	chr1	52139158	52139358	+	1	NA	NA	NA	19636	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.015000	0.497512	-24(CAGCTTAAAAAG,-,0.00),-22(GCTTAAAAAGCT,+,0.00)
mm_97603.1	chr11	78949858	78950058	+	1	NA	NA	NA	24667	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.025000	0.611940	
mm_39599.1	chr5	23598182	23598382	+	1	NA	NA	NA	18289	NM_009274	20817	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	0.000000	0.472637	
mm_44924.1	chr5	35790531	35790731	-	1	NA	NA	NA	32751	NM_001177698	231148	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0.010000	0.547264	
mm_29958.1	chr3	133234825	133235025	-	1	NA	NA	NA	-36	NM_029953	77669	Mm.98630	NM_029953	ENSMUSG00000040969	Arhgef38	9130221D24Rik|D630013G24Rik	Rho guanine nucleotide exchange factor (GEF) 38	protein-coding	0.010000	0.527363	-75(AGGTATAAAAGA,-,0.00)
mm_2903.1	chr1	131969810	131970010	+	1	NA	NA	NA	-699	NM_145977	212980	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.005000	0.512438	
mm_120262.1	chr14	63055124	63055324	+	1	NA	NA	NA	151	NR_046019	72609	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.020000	0.522388	
mm_47615.1	chr5	125141125	125141325	-	1	NA	NA	NA	37989	NM_001253905	20602	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.030000	0.577114	-34(GTGTTTATAGGC,-,0.00)
mm_164661.1	chr17	40235774	40235974	-	1	NA	NA	NA	6384	NM_009639	11572	Mm.14138	NM_009639	ENSMUSG00000025433	Crisp3	Aeg2|CRISP-3|CRS3|SGP28	cysteine-rich secretory protein 3	protein-coding	0.005000	0.417910	
mm_79150.1	chr9	47738596	47738796	+	1	NA	NA	NA	79512	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.020000	0.412935	
mm_159176.1	chr2	110596972	110597172	+	1	NA	NA	NA	-227	NM_001003915	241612	Mm.277148	NM_001003915	ENSMUSG00000041644	Slc5a12	AI315119|D630015G19|SMCT2	solute carrier family 5 (sodium/glucose cotransporter), member 12	protein-coding	0.005000	0.472637	
mm_8712.1	chr1	158969592	158969792	-	1	NA	NA	NA	-12254	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding	0.005000	0.452736	
mm_116012.1	chr13	24640205	24640405	-	1	NA	NA	NA	1657	NM_029679	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.015000	0.532338	
mm_92345.1	chr10	75837320	75837520	-	1	NA	NA	NA	-2539	NM_010361	14872	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.065000	0.611940	
mm_170518.1	chr19	30660601	30660801	-	1	NA	NA	NA	-111205	NM_010051	13380	Mm.214717	NM_010051	ENSMUSG00000024868	Dkk1	mdkk-1	dickkopf WNT signaling pathway inhibitor 1	protein-coding	0.010000	0.507463	
mm_3399.1	chr1	143738933	143739133	+	1	NA	NA	NA	-316	NM_001038593	69367	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	0.025000	0.432836	
mm_73692.1	chr8	111563937	111564137	+	1	NA	NA	NA	25694	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.015000	0.462687	-25(TCTTATATGGCA,+,0.00),51(TGCCTTTTAAGC,-,0.00),53(CCTTTTAAGCGC,+,0.00)
mm_153409.1	chr19	40564904	40565104	-	1	NA	NA	NA	23459	NM_019698	56454	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	0.065000	0.592040	
mm_62761.1	chr7	112093002	112093202	+	1	NA	NA	NA	65955	NM_015814	50781	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148	dickkopf WNT signaling pathway inhibitor 3	protein-coding	0.025000	0.462687	
mm_56609.1	chr6	112488866	112489066	-	1	NA	NA	NA	842	NM_001081147	18430	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding	0.065000	0.567164	
mm_160086.1	chr7	14122860	14123060	-	1	NA	NA	NA	33	NM_001101586	629203	Mm.482066	NM_001101586	ENSMUSG00000074375	Sult2a3	EG629203|Gm6955	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 3	protein-coding	0.010000	0.363184	
mm_11648.1	chr2	34961591	34961791	+	1	NA	NA	NA	81	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.025000	0.611940	
mm_49268.1	chr6	17491171	17491371	+	1	NA	NA	NA	27314	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.015000	0.522388	
mm_152413.1	chr19	10605792	10605992	-	1	NA	NA	NA	267	NM_015735	13194	Mm.289915	NM_015735	ENSMUSG00000024740	Ddb1	127kDa|AA408517|p127-Ddb1	damage specific DNA binding protein 1	protein-coding	0.065000	0.636816	
mm_17884.1	chr2	34961861	34962061	-	1	NA	NA	NA	-189	NM_001326601	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.015000	0.482587	-33(GCTTAAAAAGCA,+,0.00)
mm_67951.1	chr7	100498328	100498528	-	1	NA	NA	NA	5070	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.020000	0.492537	
mm_74859.1	chr8	24818432	24818632	-	1	NA	NA	NA	5837	NM_001272058	11499	Mm.143889	NM_007401	ENSMUSG00000031554	Adam5	tMDC II|tMDCII	a disintegrin and metallopeptidase domain 5	protein-coding	0.005000	0.527363	
mm_168372.1	chr1	120120948	120121148	-	1	NA	NA	NA	48	NM_007830	13167	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	0.080000	0.592040	-1(TGCTTTTAAAGG,-,0.00),0(GCTTTTAAAGGC,+,0.00),0(GCTTTTAAAGGC,-,0.00),1(CTTTTAAAGGCG,+,0.00)
mm_134844.1	chr16	26526714	26526914	-	1	NA	NA	NA	-43	NM_001101640	100043057	Mm.295917	NM_001101640	ENSMUSG00000091972	Tmem207	Gm540	transmembrane protein 207	protein-coding	0.005000	0.432836	
mm_115830.1	chr13	21286809	21287009	-	1	NA	NA	NA	5777	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.005000	0.437811	
mm_113012.1	chr13	21935323	21935523	+	1	NA	NA	NA	-9671	NM_183014	193452	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	0.030000	0.318408	
mm_36631.1	chr4	91939852	91940052	-	1	NA	NA	NA	207269	NM_027034	69314	Mm.55891	NM_027034	ENSMUSG00000028533	Izumo3	1700011H22Rik	IZUMO family member 3	protein-coding	0.000000	0.437811	
mm_46234.1	chr5	99217738	99217938	-	1	NA	NA	NA	35089	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.005000	0.363184	
mm_129757.1	chr15	82380045	82380245	-	1	NA	NA	NA	115	NM_019823	56448	Mm.474216	NM_019823	ENSMUSG00000061740	Cyp2d22	2D22	cytochrome P450, family 2, subfamily d, polypeptide 22	protein-coding	0.040000	0.587065	
mm_1399.1	chr1	67144704	67144904	+	1	NA	NA	NA	21777	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.368159	
mm_89000.1	chr10	81610054	81610254	+	1	NA	NA	NA	3846	NR_030677	268319	Mm.131825	NM_001033363	ENSMUSG00000074862	BC025920	-	zinc finger protein pseudogene	pseudo	0.005000	0.467662	
mm_71873.1	chr8	69271017	69271217	+	1	NA	NA	NA	37	NM_172491	211135	Mm.294970	NM_172491	ENSMUSG00000079038	D130040H23Rik	-	RIKEN cDNA D130040H23 gene	protein-coding	0.040000	0.567164	
mm_3368.1	chr1	138913560	138913760	+	1	NA	NA	NA	-36710	NR_138576	75546	Mm.71176	NR_138576	ENSMUSG00000099808	1700019P21Rik	-	RIKEN cDNA 1700019P21 gene	ncRNA	0.015000	0.472637	
mm_98658.1	chr11	96271231	96271431	+	1	NA	NA	NA	1	NM_008270	15417	Mm.258271	NM_008270	ENSMUSG00000020875	Hoxb9	Hox-2.5	homeobox B9	protein-coding	0.060000	0.601990	
mm_103805.1	chr11	82960596	82960796	-	1	NA	NA	NA	-15	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.020000	0.467662	
mm_125771.1	chr15	74586836	74587036	+	1	NA	NA	NA	49382	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.015000	0.557214	
mm_83433.1	chr9	44998901	44999101	-	1	NA	NA	NA	10589	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.015000	0.462687	
mm_68926.1	chr7	126474857	126475057	-	1	NA	NA	NA	173	NM_001289538	20399	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	0.115000	0.731343	
mm_105539.1	chr11	106301454	106301654	-	1	NA	NA	NA	342	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.020000	0.572139	
mm_112416.1	chr13	3995263	3995463	+	1	NA	NA	NA	-50014	NM_031250	83428	Mm.313662	NM_031250	ENSMUSG00000044988	Ucn3	ucn III	urocortin 3	protein-coding	0.025000	0.527363	
mm_127994.1	chr15	12674078	12674278	-	1	NA	NA	NA	-81622	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.010000	0.467662	
mm_104258.1	chr11	88924510	88924710	-	1	NA	NA	NA	18682	NR_045955	73921	Mm.439148	NR_045955	ENSMUSG00000087338	Scpep1os	4930405P13Rik	serine carboxypeptidase 1, opposite strand	ncRNA	0.015000	0.582090	
mm_125283.1	chr15	36608524	36608724	+	1	NA	NA	NA	349	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.125000	0.731343	
mm_3051.1	chr1	134046588	134046788	+	1	NA	NA	NA	9173	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.060000	0.616915	
mm_163927.1	chr14	47200149	47200349	+	1	NA	NA	NA	-10847	NM_008102	14528	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	0.015000	0.497512	
mm_22720.1	chr3	19508495	19508695	+	1	NA	NA	NA	0	NM_001163536	66326	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0.010000	0.502488	
mm_56648.1	chr6	113377644	113377844	-	1	NA	NA	NA	-224	NM_133932	101206	Mm.266811	NM_133932	ENSMUSG00000048930	Tada3	1110004B19Rik|ADA3|AI987856|Tada3l	transcriptional adaptor 3	protein-coding	0.050000	0.651741	
mm_61284.1	chr7	67421185	67421385	+	1	NA	NA	NA	-48427	NM_001291195	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.015000	0.512438	
mm_59481.1	chr7	27462466	27462666	+	1	NA	NA	NA	10148	NM_001290525	233016	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0.045000	0.582090	
mm_28571.1	chr3	93444990	93445190	-	1	NA	NA	NA	2760	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.035000	0.557214	
mm_1793.1	chr1	79197652	79197852	+	1	NA	NA	NA	242338	NM_009129	20254	Mm.5038	NM_009129	ENSMUSG00000050711	Scg2	Chgc|SgII	secretogranin II	protein-coding	0.010000	0.422886	-33(GTATATAAATGG,-,0.00),-19(CCCCATAAAGAG,-,0.00)
mm_52753.1	chr6	120773464	120773664	+	1	NA	NA	NA	-204	NM_001081048	71803	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	0.015000	0.512438	
mm_80787.1	chr9	95954693	95954893	+	1	NA	NA	NA	33	NM_001311130	24127	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	0.095000	0.631841	
mm_90067.1	chr10	116314966	116315166	+	1	NA	NA	NA	13692	NM_029928	19263	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0.015000	0.447761	
mm_147928.1	chr18	65939702	65939902	-	1	NA	NA	NA	-713	NM_013833	19434	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	0.025000	0.522388	78(GACCCTTAAAGA,-,0.00)
mm_68678.1	chr7	118983989	118984189	-	1	NA	NA	NA	11122	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.035000	0.626866	
mm_171665.1	chr4	46511210	46511410	+	1	NA	NA	NA	21981	NM_053179	94181	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.055000	0.537313	-31(CTCCTTAAGAGG,-,0.00)
mm_169334.1	chr14	120275625	120275825	+	1	NA	NA	NA	56	NM_175341	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding	0.045000	0.572139	
mm_24813.1	chr3	95622142	95622342	+	1	NA	NA	NA	-2738	NM_019561	56205	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.055000	0.517413	76(TCCTTTTTAAGG,-,0.00),78(CTTTTTAAGGAG,+,0.00)
mm_13690.1	chr2	117120802	117121002	+	1	NA	NA	NA	-169	NM_001277256	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.105000	0.676617	
mm_154011.1	chr19	53076050	53076250	-	1	NA	NA	NA	-102	NR_045320	78457	Mm.76932	NR_045320	ENSMUSG00000099988	1700054A03Rik	-	RIKEN cDNA 1700054A03 gene	ncRNA	0.045000	0.517413	
mm_149312.1	chr19	10781763	10781963	+	1	NA	NA	NA	40916	NR_027805	403202	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0.015000	0.487562	
mm_76279.1	chr8	84184002	84184202	-	1	NA	NA	NA	-5141	NR_029821	723819		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	0.100000	0.721393	-97(CCTCAAAGAGGC,+,0.00)
mm_65520.1	chr7	25756088	25756288	-	1	NA	NA	NA	-1468	NM_144922	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.045000	0.532338	
mm_99245.1	chr11	101079584	101079784	+	1	NA	NA	NA	1273	NM_010475	15485	Mm.188939	NM_010475	ENSMUSG00000019301	Hsd17b1	17HSDB1|17beta-HSD|E2DH|Hsd17ba	hydroxysteroid (17-beta) dehydrogenase 1	protein-coding	0.050000	0.611940	
mm_18393.1	chr2	60209749	60209949	-	1	NA	NA	NA	-87	NM_020575	57438	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.165000	0.805970	
mm_10786.1	chr2	24345226	24345426	+	1	NA	NA	NA	35	NM_001159562	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.025000	0.472637	56(TTCTTTATAAGC,-,0.00)
mm_37065.1	chr4	116074936	116075136	-	1	NA	NA	NA	34	NM_025641	66576	Mm.181721	NM_025641	ENSMUSG00000063882	Uqcrh	2210416J04Rik|2310021J10Rik|2610041P16Rik	ubiquinol-cytochrome c reductase hinge protein	protein-coding	0.075000	0.547264	
mm_132166.1	chr16	32277356	32277556	+	1	NA	NA	NA	-5	NM_027355	70238	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	0.095000	0.636816	
mm_11632.1	chr2	34775670	34775870	+	1	NA	NA	NA	3680	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.015000	0.402985	
mm_32181.1	chr4	100911396	100911596	+	1	NA	NA	NA	134817	NM_198037	320508	Mm.151962	NM_198037	ENSMUSG00000028532	Cachd1	1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573	cache domain containing 1	protein-coding	0.010000	0.373134	-60(CCATTTAAACTG,+,0.00),8(CTCTCTATAAAC,-,0.00)
mm_113942.1	chr13	49762380	49762580	+	1	NA	NA	NA	80350	NM_172015	105148	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	0.050000	0.527363	
mm_119735.1	chr14	54121381	54121581	+	1	NA	NA	NA	132448	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.437811	
mm_168254.1	chr10	85957663	85957863	-	1	NA	NA	NA	30	NM_145422	28088	Mm.9257	NM_145422	ENSMUSG00000001783	Rtcb	AI255213|AI463255|D10Wsu52e|FAAP|HSPC117	RNA 2',3'-cyclic phosphate and 5'-OH ligase	protein-coding	0.085000	0.611940	
mm_124486.1	chr14	121738401	121738601	-	1	NA	NA	NA	428	NM_001128308	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.045000	0.527363	
mm_83152.1	chr9	40456225	40456425	-	1	NA	NA	NA	-561	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.025000	0.542289	
mm_102342.1	chr11	58072925	58073125	-	1	NA	NA	NA	-31128	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.005000	0.517413	
mm_102081.1	chr11	52278991	52279191	-	1	NA	NA	NA	3504	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.015000	0.552239	
mm_61205.1	chr7	64153820	64154020	+	1	NA	NA	NA	85	NM_001039104	17364	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.005000	0.542289	
mm_85986.1	chr9	112185847	112186047	-	1	NA	NA	NA	2	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.040000	0.562189	
mm_172286.1	chr6	93630086	93630286	+	1	NA	NA	NA	282777	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.015000	0.492537	-36(CCCCTTATAAGG,-,0.00),-34(CCTTATAAGGAC,+,0.00)
mm_73600.1	chr8	109998815	109999015	+	1	NA	NA	NA	8479	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.020000	0.527363	
mm_93330.1	chr10	99430727	99430927	-	1	NA	NA	NA	167596	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.030000	0.517413	
mm_112972.1	chr13	21287059	21287259	+	1	NA	NA	NA	5527	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.000000	0.383085	
mm_149882.1	chr19	25300489	25300689	+	1	NA	NA	NA	63387	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.030000	0.527363	
mm_83079.1	chr9	39603541	39603741	-	1	NA	NA	NA	11	NM_001199556	244810	Mm.208855	NM_178737	ENSMUSG00000038112	AW551984	3222402N16	expressed sequence AW551984	protein-coding	0.025000	0.572139	
mm_94284.1	chr11	3983649	3983849	+	1	NA	NA	NA	113	NM_016922	53897	Mm.103414	NM_016922	ENSMUSG00000049721	Gal3st1	Cst|Gcst	galactose-3-O-sulfotransferase 1	protein-coding	0.125000	0.781095	
mm_132212.1	chr16	32621376	32621576	+	1	NA	NA	NA	12580	NM_011638	22042	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0.000000	0.422886	
mm_125739.1	chr15	73512599	73512799	+	1	NA	NA	NA	139	NM_001081066	105841	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.105000	0.726368	
mm_170846.1	chr2	177578117	177578317	-	1	NA	NA	NA	79991	NR_036450	433520	Mm.425117	NM_001024825		Gm14403	OTTMUSG00000016571	predicted gene 14403	ncRNA	0.010000	0.457711	
mm_169851.1	chr1	63200400	63200600	+	1	NA	NA	NA	142	NM_001285936	73884	Mm.86986	NM_028673	ENSMUSG00000027520	Zdbf2	4930431J08Rik|9330107J05Rik	zinc finger, DBF-type containing 2	protein-coding	0.060000	0.552239	
mm_12322.1	chr2	69382005	69382205	+	1	NA	NA	NA	1643	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.015000	0.432836	
mm_129453.1	chr15	78564908	78565108	-	1	NA	NA	NA	7775	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.025000	0.606965	
mm_66140.1	chr7	31116798	31116998	-	1	NA	NA	NA	-1572	NM_001110252	15451	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0.040000	0.651741	
mm_119357.1	chr14	41114833	41115033	+	1	NA	NA	NA	9900	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.005000	0.402985	
mm_149501.1	chr19	11921301	11921501	+	1	NA	NA	NA	-2327	NR_105960	102465601		NR_105960	ENSMUSG00000104979	Mir6994	mmu-mir-6994	microRNA 6994	ncRNA	0.020000	0.452736	
mm_30482.1	chr3	155025099	155025299	-	1	NA	NA	NA	30208	NM_177066	435766	Mm.210428	NM_177066	ENSMUSG00000040086	Tnni3k	Cark|D830019J24Rik	TNNI3 interacting kinase	protein-coding	0.005000	0.358209	
mm_115919.1	chr13	23535092	23535292	-	1	NA	NA	NA	-226	NM_145073	97908	Mm.261657	NM_145073	ENSMUSG00000099517	Hist1h3g	H3.1-221|M32460	histone cluster 1, H3g	protein-coding	0.030000	0.442786	
mm_103449.1	chr11	76179523	76179723	-	1	NA	NA	NA	7	NM_026664	68299	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	0.055000	0.616915	
mm_69947.1	chr7	142251452	142251652	-	1	NA	NA	NA	-21581	NM_001037822	114666	Mm.444495	NM_001037822	ENSMUSG00000073785	Krtap5-5	A030001H12Rik|AI586182|BB149782	keratin associated protein 5-5	protein-coding	0.000000	0.542289	
mm_49742.1	chr6	34745783	34745983	+	1	NA	NA	NA	-34549	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.025000	0.477612	
mm_79998.1	chr9	67041630	67041830	+	1	NA	NA	NA	2141	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.000000	0.398010	
mm_83699.1	chr9	50659385	50659585	-	1	NA	NA	NA	295	NM_145614	235339	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	0.115000	0.691542	
mm_115983.1	chr13	24280872	24281072	-	1	NA	NA	NA	-182	NM_026825	68732	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0.105000	0.751244	
mm_17915.1	chr2	35402284	35402484	-	1	NA	NA	NA	-5210	NM_001272040	74854	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	0.045000	0.537313	59(GTGCTTTAAGGG,-,0.00),61(GCTTTAAGGGGA,+,0.00)
mm_61891.1	chr7	89981157	89981357	+	1	NA	NA	NA	-281	NM_021876	13626	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	ENSMUSG00000039373|l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	0.065000	0.606965	
mm_51331.1	chr6	72356144	72356344	+	1	NA	NA	NA	761	NM_144916	232086	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	0.015000	0.567164	
mm_170031.1	chr17	21962356	21962556	-	1	NA	NA	NA	8	NM_001199048	73233	Mm.311219	NM_001199048	ENSMUSG00000071267	Zfp942	3110048L19Rik	zinc finger protein 942	protein-coding	0.080000	0.626866	
mm_116679.1	chr13	49242833	49243033	-	1	NA	NA	NA	5230	NM_025491	66329	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.035000	0.572139	
mm_37638.1	chr4	127971588	127971788	-	1	NA	NA	NA	-847	NM_001134733	635169	Mm.346755	NM_001134733	ENSMUSG00000028813	CK137956	-	cDNA sequence CK137956	protein-coding	0.095000	0.671642	
mm_23263.1	chr3	51458522	51458722	+	1	NA	NA	NA	-25344	NM_016858	19338	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.005000	0.393035	
mm_159628.1	chr4	137409679	137409879	-	1	NA	NA	NA	12	NM_001126318	242711	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011|OTTMUSG00000009877	chymotrypsin-like elastase family, member 3A	protein-coding	0.020000	0.572139	
mm_143383.1	chr17	67955903	67956103	-	1	NA	NA	NA	-5063	NM_001347410	268970	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0.010000	0.557214	
mm_119182.1	chr14	32175553	32175753	+	1	NA	NA	NA	9864	NM_019744	27057	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.005000	0.432836	-33(GCGTTTAAATAG,-,0.00)
mm_75443.1	chr8	47533329	47533529	-	1	NA	NA	NA	41	NM_177240	320714	Mm.39461	NM_177240	ENSMUSG00000038102	Trappc11	AW558465|D030016E14Rik|R75422	trafficking protein particle complex 11	protein-coding	0.080000	0.666667	
mm_172546.1	chr7	99979665	99979865	-	1	NA	NA	NA	693	NM_175388	108937	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.055000	0.567164	
mm_124737.1	chr15	6580919	6581119	+	1	NA	NA	NA	1172	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.025000	0.552239	
mm_32597.1	chr4	111777458	111777658	+	1	NA	NA	NA	57548	NM_026470	67946	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	0.010000	0.457711	
mm_140757.1	chr17	17526573	17526773	-	1	NA	NA	NA	97816	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.010000	0.447761	-29(ACTTATAGAGAC,+,0.00)
mm_29424.1	chr3	109009020	109009220	-	1	NA	NA	NA	18487	NM_001163567	329739	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.015000	0.417910	
mm_16808.1	chr2	11159676	11159876	-	1	NA	NA	NA	-12606	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.015000	0.467662	
mm_69514.1	chr7	134911786	134911986	-	1	NA	NA	NA	26544	NM_001143802	627214	Mm.323610	NM_001143802	ENSMUSG00000073805	Fam196a	B830028B13Rik	family with sequence similarity 196, member A	protein-coding	0.000000	0.522388	
mm_140541.1	chr17	6784351	6784551	-	1	NA	NA	NA	-1671	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.030000	0.517413	
mm_126308.1	chr15	79546783	79546983	+	1	NA	NA	NA	-142	NM_199080	67040	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.095000	0.597015	
mm_61227.1	chr7	64501967	64502167	+	1	NA	NA	NA	-71	NM_001291166	11784	Mm.4657	NM_007461	ENSMUSG00000030519	Apba2	X11-like|X11L|XllL|mXllL	amyloid beta (A4) precursor protein-binding, family A, member 2	protein-coding	0.180000	0.796020	
mm_67537.1	chr7	81372387	81372587	-	1	NA	NA	NA	-27253	NM_009092	20068	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.040000	0.606965	
mm_159173.1	chr2	109676006	109676206	+	1	NA	NA	NA	209	NM_001285416	12064	Mm.1442	NM_007540	ENSMUSG00000048482	Bdnf	-	brain derived neurotrophic factor	protein-coding	0.065000	0.557214	31(GCCCTTAAAAAG,-,0.00),33(CCTTAAAAAGCG,+,0.00)
mm_22206.1	chr2	173659437	173659637	-	1	NA	NA	NA	2	NR_027957	100043911	Mm.260590	NM_001033179	ENSMUSG00000055897	Ppp4r1l-ps	1700007P14Rik|5830403E09Rik|C030010B13Rik|Ppp4r1l	protein phosphatase 4, regulatory subunit 1-like, pseudogene	pseudo	0.075000	0.731343	
mm_3636.1	chr1	152810014	152810214	+	1	NA	NA	NA	9961	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.025000	0.621891	
mm_29998.1	chr3	135590491	135590691	-	1	NA	NA	NA	100956	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.005000	0.512438	
mm_3988.1	chr1	164373137	164373337	+	1	NA	NA	NA	65565	NM_178071	171567	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	0.030000	0.507463	-32(GACTTTAAGGGG,-,0.00)
mm_54358.1	chr6	31088373	31088573	-	1	NA	NA	NA	-25380	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.005000	0.437811	-39(GTCTTTAAAAAG,-,0.00)
mm_28255.1	chr3	88552810	88553010	-	1	NA	NA	NA	17	NM_031248	83409	Mm.41680	NM_031248	ENSMUSG00000028062	Lamtor2	2010111E04Rik|AL022628|Mapbpip|P14|Rab25|Robld3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding	0.045000	0.621891	
mm_13370.1	chr2	103572023	103572223	+	1	NA	NA	NA	5813	NM_178890	99382	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.000000	0.313433	
mm_42483.1	chr5	115470759	115470959	+	1	NA	NA	NA	4593	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.030000	0.572139	
mm_6810.1	chr1	84157216	84157416	-	1	NA	NA	NA	61645	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.338308	
mm_110500.1	chr12	54203774	54203974	-	1	NA	NA	NA	0	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	0.085000	0.691542	
mm_73112.1	chr8	94746844	94747044	+	1	NA	NA	NA	1260	NM_009137	20299	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	0.025000	0.572139	
mm_120516.1	chr14	66682628	66682828	+	1	NA	NA	NA	47477	NM_001271760	11549	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	0.005000	0.417910	
mm_130995.1	chr15	103430285	103430485	-	1	NA	NA	NA	42	NM_028797	74174	Mm.325325	NM_028797	ENSMUSG00000022487	Gtsf1	1700006H03Rik|Cue110	gametocyte specific factor 1	protein-coding	0.055000	0.631841	
mm_63342.1	chr7	126966520	126966720	+	1	NA	NA	NA	-9294	NM_026638	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.000000	0.482587	
mm_164429.1	chr16	45724524	45724724	-	1	NA	NA	NA	-93	NM_019754	56370	Mm.24183	NM_019754	ENSMUSG00000022658	Tagln3	2700038H05Rik|2900005O10Rik|AI426007|Np25	transgelin 3	protein-coding	0.030000	0.577114	
mm_95448.1	chr11	50292393	50292593	+	1	NA	NA	NA	-157	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.065000	0.572139	-30(GGGTATTTAAAC,-,0.00)
mm_114086.1	chr13	54590111	54590311	+	1	NA	NA	NA	-20	NM_025933	67044	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	0.060000	0.577114	
mm_172173.1	chr6	46530753	46530953	-	1	NA	NA	NA	-713543	NM_025771	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.035000	0.497512	
mm_120433.1	chr14	65805859	65806059	+	1	NA	NA	NA	48	NM_023209	52033	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	0.095000	0.601990	
mm_114866.1	chr13	93808367	93808567	+	1	NA	NA	NA	17690	NR_049198	100885837		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	0.010000	0.393035	
mm_109282.1	chr12	109548739	109548939	+	1	NA	NA	NA	3441	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.030000	0.616915	
mm_63028.1	chr7	121045912	121046112	+	1	NA	NA	NA	11567	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.010000	0.432836	
mm_8649.1	chr1	156441288	156441488	-	1	NA	NA	NA	-20473	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.010000	0.462687	
mm_3620.1	chr1	152682918	152683118	+	1	NA	NA	NA	-57801	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.005000	0.552239	
mm_81492.1	chr9	110010380	110010580	+	1	NA	NA	NA	-41541	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.010000	0.313433	
mm_47777.1	chr5	131930486	131930686	-	1	NA	NA	NA	50317	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.005000	0.398010	
mm_20865.1	chr2	148439790	148439990	-	1	NA	NA	NA	3645	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.005000	0.427861	
mm_107949.1	chr12	72408282	72408482	+	1	NA	NA	NA	672	NM_001286448	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.120000	0.736318	
mm_71059.1	chr8	33764772	33764972	+	1	NA	NA	NA	-17102	NM_001206849	72632	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	0.050000	0.562189	
mm_8187.1	chr1	138097371	138097571	-	1	NA	NA	NA	77655	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.323383	
mm_2535.1	chr1	107362213	107362413	+	1	NA	NA	NA	-1	NM_025867	66957	Mm.12638	NM_025867	ENSMUSG00000026327	Serpinb11	2310046M08Rik|AU015399	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	protein-coding	0.005000	0.427861	
mm_91935.1	chr10	60716199	60716399	-	1	NA	NA	NA	-19809	NM_023370	22295	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0.045000	0.577114	
mm_41486.1	chr5	92112932	92113132	+	1	NA	NA	NA	-24906	NM_019490	56041	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0.005000	0.532338	
mm_81843.1	chr9	118519478	118519678	+	1	NA	NA	NA	13260	NM_018748	54214	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	0.010000	0.283582	58(TCTTTTATAGCA,+,0.00)
mm_81523.1	chr9	110058712	110058912	+	1	NA	NA	NA	6791	NM_001311164	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.000000	0.447761	
mm_117275.1	chr13	65097048	65097248	-	1	NA	NA	NA	15834	NM_001083901	66631	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	0.000000	0.467662	
mm_4292.1	chr1	171767031	171767231	+	1	NA	NA	NA	-1	NM_013730	27218	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	0.025000	0.522388	
mm_93506.1	chr10	114516692	114516892	-	1	NA	NA	NA	284578	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	0.000000	0.328358	
mm_104368.1	chr11	94352016	94352216	-	1	NA	NA	NA	24115	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.055000	0.597015	
mm_46620.1	chr5	108367809	108368009	-	1	NA	NA	NA	-20464	NM_008806	18587	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0.175000	0.805970	
mm_147452.1	chr18	46572879	46573079	-	1	NA	NA	NA	1554	NM_173394	225471	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.010000	0.462687	
mm_94669.1	chr11	17221338	17221538	+	1	NA	NA	NA	9545	NM_178909	103784	Mm.298132	NM_178909	ENSMUSG00000078970	Wdr92	AI553587|HZGJ	WD repeat domain 92	protein-coding	0.035000	0.502488	
mm_19356.1	chr2	91082149	91082349	-	1	NA	NA	NA	-11934	NM_001290765	68427	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.010000	0.611940	
mm_171015.1	chr2	83954799	83954999	+	1	NA	NA	NA	-13673	NM_027964	71861	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.050000	0.442786	
mm_16594.1	chr2	4935943	4936143	-	1	NA	NA	NA	17047	NM_010726	16922	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.025000	0.492537	
mm_124534.1	chr14	122451015	122451215	-	1	NA	NA	NA	0	NR_033325	328479	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.085000	0.701493	-7(CGCTCTTAAAGA,-,0.00),-6(GCTCTTAAAGAG,+,0.00),-4(TCTTAAAGAGAC,+,0.00)
mm_171043.1	chr2	98196038	98196238	-	1	NA	NA	NA	728481	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.035000	0.597015	
mm_105793.1	chr11	109995570	109995770	-	1	NA	NA	NA	146	NM_013851	27404	Mm.341004	NM_013851	ENSMUSG00000020620	Abca8b	Abca8	ATP-binding cassette, sub-family A (ABC1), member 8b	protein-coding	0.030000	0.452736	
mm_78849.1	chr9	44335106	44335306	+	1	NA	NA	NA	491	NM_010436	15270	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	0.070000	0.696517	35(GCCCTTTTAAGG,-,0.00),36(CCCTTTTAAGGG,-,0.00),37(CCTTTTAAGGGC,+,0.00),38(CTTTTAAGGGCC,+,0.00)
mm_34166.1	chr4	139629303	139629503	+	1	NA	NA	NA	6509	NM_175438	212647	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	0.015000	0.542289	
mm_145955.1	chr18	67668202	67668402	+	1	NA	NA	NA	26703	NM_134138	107047	Mm.150701	NM_134138	ENSMUSG00000024537	Psmg2	1700017I17Rik|AW545363|Clast3|Tnfsf5ip1	proteasome (prosome, macropain) assembly chaperone 2	protein-coding	0.005000	0.472637	
mm_162304.1	chr1	36557613	36557813	+	1	NA	NA	NA	-156	NM_001304329	20353	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.100000	0.691542	
mm_159458.1	chr3	153911947	153912147	-	1	NA	NA	NA	142	NR_028525	100217425		NR_028525		Snord45c	MBII-401	small nucleolar RNA, C/D box 45C	snoRNA	0.025000	0.447761	
mm_147014.1	chr18	34522965	34523165	-	1	NA	NA	NA	-16242	NM_146084	225358	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	0.010000	0.482587	
mm_105100.1	chr11	100939497	100939697	-	1	NA	NA	NA	-57	NM_011486	20848	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.045000	0.606965	
mm_17177.1	chr2	25356215	25356415	-	1	NA	NA	NA	17	NM_031843	83768	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0.030000	0.577114	
mm_136527.1	chr16	97461391	97461591	-	1	NA	NA	NA	1414	NM_010846	17857	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.000000	0.477612	
mm_95983.1	chr11	58978021	58978221	+	1	NA	NA	NA	28	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.075000	0.567164	
mm_66029.1	chr7	30624452	30624652	-	1	NA	NA	NA	1599	NM_025628	110323	Mm.400	NM_025628	ENSMUSG00000036751	Cox6b1	2010000G05Rik|Cox6b	cytochrome c oxidase, subunit VIb polypeptide 1	protein-coding	0.005000	0.507463	
mm_35188.1	chr4	16013693	16013893	-	1	NA	NA	NA	84	NM_145950	209212	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.140000	0.776119	
mm_28050.1	chr3	84040207	84040407	-	1	NA	NA	NA	-146	NM_172681	229473	Mm.28838	NM_172681	ENSMUSG00000033767	D930015E06Rik	Kiaa0922|mKIAA0922	RIKEN cDNA D930015E06 gene	protein-coding	0.125000	0.721393	
mm_3115.1	chr1	134576322	134576522	+	1	NA	NA	NA	16244	NM_152895	75605	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0.025000	0.467662	
mm_97353.1	chr11	77493281	77493481	+	1	NA	NA	NA	-31	NM_001004144	216963	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0.190000	0.855721	
mm_109099.1	chr12	105003352	105003552	+	1	NA	NA	NA	-4775	NM_001042699	212073	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.015000	0.477612	
mm_99154.1	chr11	100580740	100580940	+	1	NA	NA	NA	4949	NM_001146318	12799	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.015000	0.452736	
mm_90601.1	chr10	128322418	128322618	+	1	NA	NA	NA	59	NM_019953	56530	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy FGF signaling regulator 2	protein-coding	0.075000	0.631841	
mm_127736.1	chr15	103298566	103298766	+	1	NA	NA	NA	11772	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.005000	0.557214	
mm_45409.1	chr5	66323607	66323807	-	1	NA	NA	NA	13958	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.045000	0.517413	-32(GGCTATTAATGG,-,0.00)
mm_57092.1	chr6	122587524	122587724	-	1	NA	NA	NA	14820	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.005000	0.497512	
mm_67964.1	chr7	100582998	100583198	-	1	NA	NA	NA	32	NM_198831	52443	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e	mitochondrial ribosomal protein L48	protein-coding	0.065000	0.542289	-77(GGTTTTAAAAAC,-,0.00)
mm_109374.1	chr12	109650568	109650768	+	1	NA	NA	NA	-41	NR_028434	100303647		NR_028434		AF357359	MBII-426	snoRNA AF357359	snoRNA	0.010000	0.378109	
mm_10923.1	chr2	25428498	25428698	+	1	NA	NA	NA	-76	NM_007379	11305	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	0.160000	0.786070	-33(GCCTTTAAGTGG,-,0.00)
mm_160167.1	chr7	44885420	44885620	-	1	NA	NA	NA	6904	NM_001331208	75613	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	0.045000	0.592040	
mm_38155.1	chr4	135120385	135120585	-	1	NA	NA	NA	-160	NM_019732	12399	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.030000	0.616915	
mm_1599.1	chr1	74375472	74375672	+	1	NA	NA	NA	369	NM_013612	18173	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.025000	0.587065	
mm_48201.1	chr5	137533084	137533284	-	1	NA	NA	NA	45	NM_010312	14693	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	0.080000	0.656716	
mm_34940.1	chr4	155842976	155843176	+	1	NA	NA	NA	3396	NM_024263	74761	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	0.005000	0.482587	
mm_145872.1	chr18	65470384	65470584	+	1	NA	NA	NA	39487	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.467662	
mm_144969.1	chr18	37826604	37826804	+	1	NA	NA	NA	7158	NM_033583	93708	Mm.247203	NM_033583	ENSMUSG00000102543	Pcdhgc5	-	protocadherin gamma subfamily C, 5	protein-coding	0.010000	0.527363	31(GCCCCTAAAAGG,-,0.00)
mm_142087.1	chr17	35779515	35779715	-	1	NA	NA	NA	7165	NR_045459	74601	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	0.025000	0.512438	
mm_56561.1	chr6	101337811	101338011	-	1	NA	NA	NA	39986	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.000000	0.393035	
mm_170157.1	chr17	47141412	47141612	+	1	NA	NA	NA	570	NM_001097623	224829	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.035000	0.587065	
mm_111211.1	chr12	84400776	84400976	-	1	NA	NA	NA	58	NM_001286058	12499	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0.010000	0.537313	
mm_118638.1	chr14	21460844	21461044	+	1	NA	NA	NA	-38826	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.015000	0.532338	
mm_60623.1	chr7	44708642	44708842	+	1	NA	NA	NA	-1	NM_029317	75510	Mm.273301	NM_029317	ENSMUSG00000066500	Izumo2	1700023D19Rik	IZUMO family member 2	protein-coding	0.025000	0.587065	
mm_154236.1	chr19	60580281	60580481	-	1	NA	NA	NA	642	NM_001172097	78832	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	0.060000	0.661692	
mm_51488.1	chr6	83055409	83055609	+	1	NA	NA	NA	-938	NM_019752	64704	Mm.21880	NM_019752	ENSMUSG00000068329	Htra2	AI481710|Omi|Prss25|mnd2	HtrA serine peptidase 2	protein-coding	0.020000	0.467662	
mm_42413.1	chr5	115235404	115235604	+	1	NA	NA	NA	-347	NM_026398	117109	Mm.24636	NM_026398	ENSMUSG00000060152	Pop5	1500019J17Rik|2700077E03Rik|AW049989|Rnasep3	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)	protein-coding	0.115000	0.686567	
mm_39573.1	chr5	23433842	23434042	+	1	NA	NA	NA	411	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.080000	0.686567	
mm_108969.1	chr12	102469173	102469373	+	1	NA	NA	NA	139	NM_001199004	27277	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	0.125000	0.731343	
mm_55708.1	chr6	72958326	72958526	-	1	NA	NA	NA	57	NM_025284	19240	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.135000	0.721393	-8(GTGTATATAAGA,-,0.00)
mm_50319.1	chr6	47953321	47953521	+	1	NA	NA	NA	31	NM_178898	101197	Mm.241063	NM_178898	ENSMUSG00000045466	Zfp956	AI894139	zinc finger protein 956	protein-coding	0.060000	0.616915	
mm_37030.1	chr4	115057415	115057615	-	1	NA	NA	NA	-296	NM_001287388	21349	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.050000	0.626866	-17(CCTCTAAAGGAC,+,0.00)
mm_170036.1	chr17	22817638	22817838	-	1	NA	NA	NA	9	NR_030709	100042679	Mm.484007	NR_030709		Gm16386	EG545191|ENSMUSG00000073442|Gm21017	zinc finger protein 946 pseudogene	pseudo	0.050000	0.542289	
mm_95147.1	chr11	35558656	35558856	+	1	NA	NA	NA	-58060	NR_029799	723924		NR_029799	ENSMUSG00000065583	Mir218-2	Mirn218-2|mir-218-2	microRNA 218-2	ncRNA	0.015000	0.512438	
mm_137411.1	chr17	26113615	26113815	+	1	NA	NA	NA	399	NM_021793	60455	Mm.304656	NM_021793	ENSMUSG00000024180	Tmem8	AW490096|M83|Tmem8a	transmembrane protein 8 (five membrane-spanning domains)	protein-coding	0.100000	0.651741	
mm_70219.1	chr7	144941387	144941587	-	1	NA	NA	NA	-1562	NM_007631	12443	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.070000	0.651741	-52(CCCTTTATGCCC,+,0.00)
mm_128030.1	chr15	25363452	25363652	-	1	NA	NA	NA	50212	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.015000	0.368159	
mm_142753.1	chr17	48647571	48647771	-	1	NA	NA	NA	192770	NM_152823	76589	Mm.311629	NM_152823	ENSMUSG00000043592	Unc5cl	2510009H09Rik|BB155270|Zud	unc-5 family C-terminal like	protein-coding	0.035000	0.567164	
mm_163475.1	chr12	104861993	104862193	+	1	NA	NA	NA	2983	NR_104436	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.005000	0.512438	
mm_130775.1	chr15	101488004	101488204	-	1	NA	NA	NA	3199	NM_016879	53622	Mm.347934	NM_016879		Krt85	AA589597|BB007925|Hb5|Krt2-18	keratin 85	protein-coding	0.015000	0.517413	
mm_151010.1	chr19	46707583	46707783	+	1	NA	NA	NA	240	NM_020577	57344	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	0.050000	0.631841	
mm_31356.1	chr4	47207947	47208147	+	1	NA	NA	NA	35	NM_009928	12819	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.045000	0.597015	
mm_165866.1	chr4	34434359	34434559	-	1	NA	NA	NA	-116156	NM_001007589	433693	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.020000	0.388060	
mm_42497.1	chr5	115484402	115484602	+	1	NA	NA	NA	-18	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.040000	0.497512	
mm_53683.1	chr6	142345607	142345807	+	1	NA	NA	NA	10	NM_183165	232491	Mm.490474	NM_183165	ENSMUSG00000041671	Pyroxd1	-	pyridine nucleotide-disulphide oxidoreductase domain 1	protein-coding	0.085000	0.626866	
mm_77430.1	chr8	121541843	121542043	-	1	NA	NA	NA	11	NM_029597	76405	Mm.165697	NM_029597	ENSMUSG00000031809	1700018B08Rik	1700084O22Rik	RIKEN cDNA 1700018B08 gene	protein-coding	0.045000	0.582090	
mm_100689.1	chr11	3509126	3509326	-	1	NA	NA	NA	-4405	NM_172439	170835	Mm.24313	NM_172439	ENSMUSG00000034570	Inpp5j	Pib5pa|Pipp	inositol polyphosphate 5-phosphatase J	protein-coding	0.010000	0.577114	
mm_33194.1	chr4	126262292	126262492	+	1	NA	NA	NA	-13	NM_013718	27096	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	0.080000	0.666667	
mm_96770.1	chr11	69935707	69935907	+	1	NA	NA	NA	-92	NM_016875	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.155000	0.810945	
mm_8476.1	chr1	153487551	153487751	-	1	NA	NA	NA	9	NM_007842	13211	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.110000	0.676617	
mm_70184.1	chr7	143766909	143767109	-	1	NA	NA	NA	-16	NM_203492	381974	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	0.005000	0.532338	
mm_98096.1	chr11	86614559	86614759	+	1	NA	NA	NA	-30501	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.452736	-36(GGGCATATAAAG,-,0.00),9(GCCTCTTTAAAC,-,0.00)
mm_79374.1	chr9	54698824	54699024	+	1	NA	NA	NA	-635	NM_021422	58233	Mm.489676	NM_021422	ENSMUSG00000032285	Dnaja4	1110021L12Rik|AV358213|Dj4|Hsj4|mmDjA4	DnaJ heat shock protein family (Hsp40) member A4	protein-coding	0.015000	0.552239	
mm_12620.1	chr2	74697569	74697769	+	1	NA	NA	NA	-94	NM_013555	15438	Mm.26544	NM_013555	ENSMUSG00000043342	Hoxd9	Hox-4.4|Hox-5.2	homeobox D9	protein-coding	0.065000	0.651741	
mm_142116.1	chr17	35841247	35841447	-	1	NA	NA	NA	-151	NM_001010833	240087	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	0.080000	0.597015	
mm_79107.1	chr9	46268617	46268817	+	1	NA	NA	NA	109	NM_080434	66113	Mm.29738	NM_080434	ENSMUSG00000032079	Apoa5	1300007O05Rik|Apoav|RAP3	apolipoprotein A-V	protein-coding	0.010000	0.562189	2(ATCCCTAAAAGG,-,0.00),4(CCCTAAAAGGGG,+,0.00)
mm_166899.1	chr7	28441049	28441249	+	1	NA	NA	NA	212	NM_001039192	63986	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.010000	0.572139	
mm_127069.1	chr15	97373924	97374124	+	1	NA	NA	NA	-126737	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.020000	0.502488	
mm_32686.1	chr4	115839115	115839315	+	1	NA	NA	NA	17	NM_001285487	17346	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0.100000	0.681592	
mm_80469.1	chr9	78113296	78113496	+	1	NA	NA	NA	158	NM_019987	56542	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	0.115000	0.711443	
mm_110619.1	chr12	57104407	57104607	-	1	NA	NA	NA	56136	NM_001167976	217593	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0.000000	0.298507	
mm_17697.1	chr2	32353167	32353367	-	1	NA	NA	NA	62	NM_001301737	13429	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	0.135000	0.736318	
mm_127912.1	chr15	9529758	9529958	-	1	NA	NA	NA	18	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.005000	0.477612	
mm_107002.1	chr12	11282266	11282466	+	1	NA	NA	NA	16480	NM_025695	67241	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	0.005000	0.308458	
mm_27779.1	chr3	73708140	73708340	-	1	NA	NA	NA	175	NM_009738	12038	Mm.250719	NM_009738	ENSMUSG00000027792	Bche	C730038G20Rik	butyrylcholinesterase	protein-coding	0.035000	0.552239	
mm_158907.1	chr1	38535072	38535272	-	1	NA	NA	NA	92072	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.025000	0.582090	
mm_142104.1	chr17	35835565	35835765	-	1	NA	NA	NA	2636	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.070000	0.587065	
mm_129060.1	chr15	75567070	75567270	-	1	NA	NA	NA	12	NM_011837	23934	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	0.040000	0.611940	
mm_64299.1	chr7	141861582	141861782	+	1	NA	NA	NA	22610	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.010000	0.487562	
mm_55268.1	chr6	53820654	53820854	-	1	NA	NA	NA	71	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.110000	0.701493	
mm_145038.1	chr18	39371873	39372073	+	1	NA	NA	NA	115272	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.005000	0.383085	
mm_119897.1	chr14	54938482	54938682	+	1	NA	NA	NA	2085	NM_029390	67272	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	0.025000	0.567164	
mm_9942.1	chr1	190465593	190465793	-	1	NA	NA	NA	-295013	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding	0.010000	0.477612	
mm_93445.1	chr10	109903788	109903988	-	1	NA	NA	NA	96331	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.030000	0.532338	
mm_107798.1	chr12	64917823	64918023	+	1	NA	NA	NA	12	NM_001025605	217648	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	0.160000	0.820896	
mm_72007.1	chr8	70700111	70700311	+	1	NA	NA	NA	2472	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.105000	0.706468	72(GGCTCTAAGGGG,-,0.00)
mm_72017.1	chr8	70718442	70718642	+	1	NA	NA	NA	-1	NM_001195253	100502950	Mm.52981	NM_001195253	ENSMUSG00000095026	Gm3336	100041434|2410018E23Rik	predicted gene 3336	protein-coding	0.070000	0.691542	
mm_157230.1	chrX	16817226	16817426	-	1	NA	NA	NA	40	NM_172778	109731	Mm.241656	NM_172778	ENSMUSG00000040147	Maob	6330414K01Rik|MAO-B	monoamine oxidase B	protein-coding	0.065000	0.626866	
mm_65238.1	chr7	19770395	19770595	-	1	NA	NA	NA	37	NM_020486	57278	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	0.065000	0.701493	
mm_91465.1	chr10	34127906	34128106	-	1	NA	NA	NA	-34	NM_175449	215900	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik	family with sequence similarity 26, member F	protein-coding	0.015000	0.447761	
mm_168199.1	chr10	65939516	65939716	+	1	NA	NA	NA	184448	NR_038039	69433	Mm.23366	NR_038039	ENSMUSG00000100000	1700023F02Rik	AV205046	RIKEN cDNA 1700023F02 gene	ncRNA	0.015000	0.407960	
mm_22910.1	chr3	31075990	31076190	+	1	NA	NA	NA	-18968	NM_011386	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.025000	0.537313	
mm_23444.1	chr3	59729686	59729886	+	1	NA	NA	NA	0	NM_001101531	433597	Mm.297801	NM_001101531	ENSMUSG00000090527	Gm5538	-	predicted gene 5538	protein-coding	0.005000	0.333333	-72(TTTTTTATAGGT,+,0.00)
mm_64238.1	chr7	141701239	141701439	+	1	NA	NA	NA	10999	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.010000	0.527363	
mm_94257.1	chr11	3332403	3332603	+	1	NA	NA	NA	1772	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.055000	0.631841	
mm_84323.1	chr9	64002467	64002667	-	1	NA	NA	NA	19492	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.015000	0.512438	
mm_171376.1	chr4	119282717	119282917	-	1	NA	NA	NA	11696	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.020000	0.437811	
mm_122510.1	chr14	47167702	47167902	-	1	NA	NA	NA	21600	NM_008102	14528	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	0.000000	0.393035	
mm_158139.1	chrX	103256503	103256703	-	1	NA	NA	NA	3	NM_029170	75106	Mm.1441	NM_029170		4930519F16Rik	Ppnx	RIKEN cDNA 4930519F16 gene	protein-coding	0.005000	0.417910	
mm_72504.1	chr8	83748841	83749041	+	1	NA	NA	NA	-7630	NM_001163031	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.005000	0.557214	
mm_67556.1	chr7	81706796	81706996	-	1	NA	NA	NA	29	NM_011983	26557	Mm.228	NM_011983	ENSMUSG00000025813	Homer2	9330120H11Rik|AW539445|CPD|Vesl-2	homer scaffolding protein 2	protein-coding	0.175000	0.840796	
mm_20916.1	chr2	150619260	150619460	-	1	NA	NA	NA	-10837	NM_027977	71881	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	0.000000	0.422886	
mm_81784.1	chr9	114723413	114723613	+	1	NA	NA	NA	-7690	NM_026036	67213	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0.015000	0.402985	
mm_8605.1	chr1	156035694	156035894	-	1	NA	NA	NA	67	NM_001160180	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.140000	0.721393	
mm_4341.1	chr1	171856561	171856761	+	1	NA	NA	NA	16964	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.010000	0.323383	
mm_108122.1	chr12	75853770	75853970	+	1	NA	NA	NA	35552	NM_001005510	319565	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0.020000	0.482587	
mm_71942.1	chr8	70374831	70375031	+	1	NA	NA	NA	1383	NM_016685	12845	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	0.120000	0.721393	
mm_5585.1	chr1	39552232	39552432	-	1	NA	NA	NA	-3492	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.000000	0.303483	
mm_116449.1	chr13	43171300	43171500	-	1	NA	NA	NA	101	NM_001252639	67046	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	0.120000	0.676617	
mm_94447.1	chr11	6388971	6389171	+	1	NA	NA	NA	-6054	NM_001005867	52915	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.095000	0.736318	
mm_156894.1	chrX	167089063	167089263	+	1	NA	NA	NA	-18793	NM_001101606	667794	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	0.010000	0.417910	
mm_85501.1	chr9	106160032	106160232	-	1	NA	NA	NA	-1994	NM_174846	235582	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	0.050000	0.542289	
mm_119989.1	chr14	55580831	55581031	+	1	NA	NA	NA	2437	NM_011189	19186	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0.045000	0.611940	
mm_135692.1	chr16	52436177	52436377	-	1	NA	NA	NA	16804	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.328358	
mm_39321.1	chr5	8068567	8068767	+	1	NA	NA	NA	12125	NM_001080974	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.005000	0.373134	
mm_130184.1	chr15	93519458	93519658	-	1	NA	NA	NA	76333	NM_001033217	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.090000	0.696517	
mm_156324.1	chrX	137671292	137671492	+	1	NA	NA	NA	100638	NM_030688	60367	Mm.328321	NM_030688	ENSMUSG00000059203	Il1rapl2	-	interleukin 1 receptor accessory protein-like 2	protein-coding	0.000000	0.283582	-100(CCTTTTAAATTT,+,0.00)
mm_162760.1	chr10	61784491	61784691	-	1	NA	NA	NA	-727	NM_207000	404634	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	0.025000	0.452736	
mm_135200.1	chr16	36532127	36532327	-	1	NA	NA	NA	29907	NM_013803	12374	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.010000	0.582090	
mm_49807.1	chr6	36388097	36388297	+	1	NA	NA	NA	37	NR_015589	319472	Mm.226434	NR_015589	ENSMUSG00000073154	9330158H04Rik	-	RIKEN cDNA 9330158H04 gene	ncRNA	0.060000	0.616915	
mm_2394.1	chr1	93685376	93685576	+	1	NA	NA	NA	-99	NM_016778	51800	Mm.3295	NM_016778	ENSMUSG00000026278	Bok	matador|mtd	BCL2-related ovarian killer	protein-coding	0.065000	0.597015	
mm_111702.1	chr12	103676669	103676869	-	1	NA	NA	NA	-7	NM_001310472	194604		NM_001310472	ENSMUSG00000071179	Serpina16	Gm46	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 16	protein-coding	0.015000	0.537313	
mm_20487.1	chr2	130048246	130048446	-	1	NA	NA	NA	-31938	NR_105757	102466628		NR_105757	ENSMUSG00000098347	Mir6339	Gm27848|mmu-mir-6339	microRNA 6339	ncRNA	0.040000	0.557214	
mm_145924.1	chr18	67088254	67088454	+	1	NA	NA	NA	56	NM_177137	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.090000	0.731343	
mm_54091.1	chr6	16469800	16470000	-	1	NA	NA	NA	428541	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.000000	0.343284	
mm_168810.1	chr12	20990433	20990633	+	1	NA	NA	NA	-121223	NM_001004364	211914	Mm.358946	NM_001004364	ENSMUSG00000052632	Asap2	6530401G17Rik|Ddef2|Gm1523|Gm592|PAG3|PAP	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding	0.110000	0.746269	
mm_53641.1	chr6	140622602	140622802	+	1	NA	NA	NA	39	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.025000	0.577114	
mm_16647.1	chr2	6212891	6213091	-	1	NA	NA	NA	3	NM_024208	67856	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0.030000	0.626866	-36(AGGTCTAAAAGG,-,0.00)
mm_116640.1	chr13	49043823	49044023	-	1	NA	NA	NA	75811	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.025000	0.417910	
mm_103430.1	chr11	75756778	75756978	-	1	NA	NA	NA	23991	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.020000	0.457711	
mm_61612.1	chr7	80081846	80082046	+	1	NA	NA	NA	-6689	NR_045695	100859962	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.065000	0.582090	
mm_35888.1	chr4	49542742	49542942	-	1	NA	NA	NA	6704	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.020000	0.447761	
mm_166216.1	chr5	58315778	58315978	+	1	NA	NA	NA	137120	NR_046190	78163	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA	0.015000	0.358209	
mm_130599.1	chr15	99772787	99772987	-	1	NA	NA	NA	-372	NM_028015	71949	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	0.025000	0.567164	
mm_8305.1	chr1	144003893	144004093	-	1	NA	NA	NA	156	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.045000	0.567164	
mm_126669.1	chr15	84324696	84324896	+	1	NA	NA	NA	76	NM_022321	64099	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0.020000	0.542289	
mm_123847.1	chr14	70707924	70708124	-	1	NA	NA	NA	-54940	NM_181345	328440	Mm.347749	NM_181345	ENSMUSG00000047911	Npm2	-	nucleophosmin/nucleoplasmin 2	protein-coding	0.005000	0.437811	
mm_172722.1	chr8	72305176	72305376	-	1	NA	NA	NA	-13786	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.075000	0.601990	
mm_39543.1	chr5	21543458	21543658	+	1	NA	NA	NA	31	NM_028977	74511	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0.025000	0.542289	
mm_136077.1	chr16	84834870	84835070	-	1	NA	NA	NA	28	NM_001302216	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.085000	0.621891	
mm_101632.1	chr11	36307325	36307525	-	1	NA	NA	NA	-327336	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.020000	0.552239	-33(AGGCATAAAAAG,-,0.00),-31(GCATAAAAAGAC,+,0.00)
mm_81273.1	chr9	108095144	108095344	+	1	NA	NA	NA	-764	NM_146226	235606	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0.040000	0.557214	
mm_119699.1	chr14	53683497	53683697	+	1	NA	NA	NA	570332	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.547264	
mm_62038.1	chr7	92180785	92180985	+	1	NA	NA	NA	-54085	NM_001243047	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.025000	0.562189	
mm_42372.1	chr5	114927985	114928185	+	1	NA	NA	NA	4845	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.015000	0.552239	
mm_22821.1	chr3	27221039	27221239	+	1	NA	NA	NA	38135	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.005000	0.457711	
mm_172600.1	chr8	15519751	15519951	+	1	NA	NA	NA	462198	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.075000	0.527363	
mm_126473.1	chr15	81466252	81466452	+	1	NA	NA	NA	36	NM_019712	56438	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.100000	0.646766	
mm_65351.1	chr7	24997465	24997665	-	1	NA	NA	NA	8372	NM_001290469	232975	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.035000	0.582090	
mm_158205.1	chrX	105848975	105849175	-	1	NA	NA	NA	80297	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.005000	0.402985	
mm_30320.1	chr3	151731619	151731819	-	1	NA	NA	NA	18240	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.005000	0.393035	
mm_107214.1	chr12	26445095	26445295	+	1	NA	NA	NA	11257	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.010000	0.383085	
mm_169285.1	chr13	97190513	97190713	-	1	NA	NA	NA	7744	NM_010422	15212	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.020000	0.442786	
mm_71335.1	chr8	45507639	45507839	+	1	NA	NA	NA	-49	NM_172752	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.040000	0.512438	
mm_95395.1	chr11	49651676	49651876	+	1	NA	NA	NA	-11819	NM_054037	68662	Mm.22802	NM_054037	ENSMUSG00000064057	Scgb3a1	HIN-1|LuLeu2|Pnsp2|UGRP2|Utgrp2	secretoglobin, family 3A, member 1	protein-coding	0.020000	0.388060	
mm_148975.1	chr19	7557566	7557766	+	1	NA	NA	NA	207	NM_139269	225845	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.075000	0.661692	
mm_44084.1	chr5	149175100	149175300	+	1	NA	NA	NA	6836	NR_015478	433966	Mm.207047	NR_015478	ENSMUSG00000097191	5730422E09Rik	-	RIKEN cDNA 5730422E09 gene	ncRNA	0.005000	0.368159	
mm_6238.1	chr1	66945338	66945538	-	1	NA	NA	NA	-382	NM_021285	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.015000	0.437811	
mm_37727.1	chr4	129558715	129558915	-	1	NA	NA	NA	-443	NM_010693	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.020000	0.492537	
mm_165695.1	chr3	93445061	93445261	+	1	NA	NA	NA	2831	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.045000	0.552239	
mm_161371.1	chr14	66170377	66170577	-	1	NA	NA	NA	29517	NM_144803	110902	Mm.57350	NM_144803	ENSMUSG00000022041	Chrna2	Acra-2|Acra2|BC011490	cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal)	protein-coding	0.020000	0.527363	
mm_98657.1	chr11	96271135	96271335	+	1	NA	NA	NA	-95	NM_008270	15417	Mm.258271	NM_008270	ENSMUSG00000020875	Hoxb9	Hox-2.5	homeobox B9	protein-coding	0.080000	0.572139	
mm_7671.1	chr1	128588681	128588881	-	1	NA	NA	NA	3518	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.005000	0.308458	
mm_110300.1	chr12	32770816	32771016	-	1	NA	NA	NA	-49419	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.010000	0.447761	
mm_167637.1	chr9	63333542	63333742	+	1	NA	NA	NA	44210	NM_011840	23938	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	0.025000	0.522388	
mm_57215.1	chr6	122921398	122921598	-	1	NA	NA	NA	-350	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.010000	0.482587	
mm_71486.1	chr8	46739781	46739981	+	1	NA	NA	NA	136	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.030000	0.412935	
mm_149352.1	chr19	10895297	10895497	+	1	NA	NA	NA	166	NM_001253843	28000	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	0.115000	0.696517	
mm_60030.1	chr7	30976960	30977160	+	1	NA	NA	NA	17	NM_175240	76415	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.015000	0.517413	
mm_58427.1	chr7	3296903	3297103	+	1	NA	NA	NA	3975	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.025000	0.547264	
mm_149497.1	chr19	11912217	11912417	+	1	NA	NA	NA	-82	NM_172635	225929	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	0.125000	0.696517	
mm_45781.1	chr5	87336412	87336612	-	1	NA	NA	NA	683	NM_028094	72094	Mm.482739	NM_028094	ENSMUSG00000035780	Ugt2a3	2010321J07Rik	UDP glucuronosyltransferase 2 family, polypeptide A3	protein-coding	0.010000	0.412935	
mm_38068.1	chr4	134094946	134095146	-	1	NA	NA	NA	27	NM_013706	23833	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	0.010000	0.527363	
mm_129393.1	chr15	78242628	78242828	-	1	NA	NA	NA	-2083	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.005000	0.527363	
mm_37779.1	chr4	130174694	130174894	-	1	NA	NA	NA	8	NM_001168333	94242	Mm.15801	NM_023476	ENSMUSG00000028776	Tinagl1	1110021J17Rik|AZ-1|AZ1|Arg1|Lcn7|TARP|Tinagl	tubulointerstitial nephritis antigen-like 1	protein-coding	0.065000	0.691542	
mm_32673.1	chr4	115738330	115738530	+	1	NA	NA	NA	357	NM_172698	230648	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	0.010000	0.477612	
mm_111064.1	chr12	80114428	80114628	-	1	NA	NA	NA	-1515	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.095000	0.587065	
mm_108557.1	chr12	84571424	84571624	+	1	NA	NA	NA	1696	NM_001301427	12677	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	0.065000	0.532338	
mm_58054.1	chr6	136857428	136857628	-	1	NA	NA	NA	72	NM_026639	109978	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	0.040000	0.507463	
mm_88759.1	chr10	80329899	80330099	+	1	NA	NA	NA	-146	NM_001204931	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.070000	0.731343	
mm_71241.1	chr8	40909569	40909769	+	1	NA	NA	NA	-16564	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.010000	0.358209	
mm_113552.1	chr13	38149406	38149606	+	1	NA	NA	NA	-1788	NM_023842	109620	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding	0.010000	0.462687	
mm_22735.1	chr3	19692407	19692607	+	1	NA	NA	NA	2889	NM_205769	12918	Mm.290689	NM_205769	ENSMUSG00000049796	Crh	CRF|Gm1347	corticotropin releasing hormone	protein-coding	0.005000	0.482587	
mm_147583.1	chr18	56504306	56504506	-	1	NA	NA	NA	-33733	NR_106160	102465790		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	0.005000	0.497512	
mm_50446.1	chr6	48895124	48895324	+	1	NA	NA	NA	-31	NM_029638	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.010000	0.567164	
mm_42150.1	chr5	111420155	111420355	+	1	NA	NA	NA	2089	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.090000	0.711443	
mm_147234.1	chr18	38250397	38250597	-	1	NA	NA	NA	68	NR_027904	73516	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0.085000	0.626866	
mm_167454.1	chr8	123041993	123042193	-	1	NA	NA	NA	191	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.200000	0.830846	
mm_62528.1	chr7	102233019	102233219	+	1	NA	NA	NA	10091	NR_111937	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.015000	0.462687	
mm_67491.1	chr7	80728806	80729006	-	1	NA	NA	NA	-40029	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.035000	0.522388	
mm_20851.1	chr2	148349288	148349488	-	1	NA	NA	NA	-45989	NM_009219	20608	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0.000000	0.447761	
mm_74323.1	chr8	126855159	126855359	+	1	NA	NA	NA	90662	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.010000	0.457711	
mm_76006.1	chr8	72548156	72548356	-	1	NA	NA	NA	54	NM_027485	70625	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	0.130000	0.736318	
mm_139577.1	chr17	57078488	57078688	+	1	NA	NA	NA	-78	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.015000	0.601990	
mm_57589.1	chr6	127768881	127769081	-	1	NA	NA	NA	178	NM_201371	381813	Mm.39750	NM_201371	ENSMUSG00000030350	Prmt8	Hrmt1l3|Hrmt1l4	protein arginine N-methyltransferase 8	protein-coding	0.120000	0.701493	
mm_166549.1	chr6	41032862	41033062	+	1	NA	NA	NA	2547	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.532338	
mm_54001.1	chr6	7692785	7692985	-	1	NA	NA	NA	297	NM_012055	27053	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0.085000	0.582090	
mm_75706.1	chr8	68894580	68894780	-	1	NA	NA	NA	14125	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.015000	0.442786	
mm_4878.1	chr1	187943226	187943426	+	1	NA	NA	NA	-54501	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.030000	0.467662	
mm_91749.1	chr10	49783436	49783636	-	1	NA	NA	NA	5218	NM_010349	14806	Mm.332838	NM_010349	ENSMUSG00000056073	Grik2	AW124492|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.030000	0.547264	
mm_118720.1	chr14	22212406	22212606	+	1	NA	NA	NA	192794	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.398010	
mm_760.1	chr1	43958722	43958922	+	1	NA	NA	NA	24828	NM_009418	22019	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.005000	0.338308	
mm_117773.1	chr13	96649733	96649933	-	1	NA	NA	NA	21103	NM_008255	15357	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0.010000	0.318408	37(TCTTTTAGAGAC,+,0.00)
mm_99761.1	chr11	106787601	106787801	+	1	NA	NA	NA	793	NM_007840	13207	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0.110000	0.651741	
mm_7466.1	chr1	120483100	120483300	-	1	NA	NA	NA	21884	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.010000	0.467662	
mm_101939.1	chr11	50207487	50207687	-	1	NA	NA	NA	3233	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.035000	0.557214	
mm_45421.1	chr5	66593348	66593548	-	1	NA	NA	NA	25369	NM_009686	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.010000	0.417910	
mm_28161.1	chr3	87783200	87783400	-	1	NA	NA	NA	11862	NM_001033124	18211	Mm.80682	NM_001033124	ENSMUSG00000028072	Ntrk1	C80751|Tkr|TrkA|trk	neurotrophic tyrosine kinase, receptor, type 1	protein-coding	0.020000	0.587065	
mm_6328.1	chr1	71618532	71618732	-	1	NA	NA	NA	34602	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.025000	0.517413	
mm_172042.1	chr6	127410918	127411118	+	1	NA	NA	NA	-35822	NM_001346513	101187	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.035000	0.547264	
mm_41895.1	chr5	105518960	105519160	+	1	NA	NA	NA	-411	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.045000	0.582090	
mm_152520.1	chr19	11304231	11304431	-	1	NA	NA	NA	-20518	NM_183190	269063	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	0.005000	0.412935	
mm_80169.1	chr9	71591268	71591468	+	1	NA	NA	NA	992	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	0.020000	0.447761	-34(GTCTATAAATGG,-,0.00)
mm_138331.1	chr17	34894487	34894687	+	1	NA	NA	NA	28	NM_198886	193736	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	0.130000	0.761194	
mm_26240.1	chr3	141465389	141465589	+	1	NA	NA	NA	-75	NM_009472	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.065000	0.671642	
mm_170133.1	chr17	39847388	39847588	+	1	NA	NA	NA	4491	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.075000	0.537313	
mm_83267.1	chr9	42770459	42770659	-	1	NA	NA	NA	173812	NM_175481	110637	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0.005000	0.333333	
mm_141602.1	chr17	32769244	32769444	-	1	NA	NA	NA	18203	NM_001346705	208292	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	0.015000	0.358209	
mm_106398.1	chr11	118868446	118868646	-	1	NA	NA	NA	41026	NM_001024931	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.015000	0.522388	
mm_109995.1	chr12	15815505	15815705	-	1	NA	NA	NA	1180	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.065000	0.597015	-4(CCTTTTAAGTCG,+,0.00)
mm_155206.1	chrX	56734714	56734914	+	1	NA	NA	NA	2857	NM_001077361	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.010000	0.303483	
mm_1539.1	chr1	72851973	72852173	+	1	NA	NA	NA	22792	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.035000	0.582090	
mm_5116.1	chr1	6454192	6454392	-	1	NA	NA	NA	-32939	NM_001244693	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.373134	
mm_141117.1	chr17	26090065	26090265	-	1	NA	NA	NA	-1	NM_011933	26378	Mm.292869	NM_011933	ENSMUSG00000036775	Decr2	-	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	protein-coding	0.040000	0.601990	
mm_78228.1	chr9	21589112	21589312	+	1	NA	NA	NA	-3510	NM_178619	69773	Mm.39704	NM_178619	ENSMUSG00000048429	Timm29	1810026J23Rik	translocase of inner mitochondrial membrane 29	protein-coding	0.005000	0.557214	
mm_20250.1	chr2	126499823	126500023	-	1	NA	NA	NA	-8370	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	0.030000	0.552239	
mm_94235.1	chr11	3291739	3291939	+	1	NA	NA	NA	1382	NM_019574	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.045000	0.562189	
mm_119515.1	chr14	47394973	47395173	+	1	NA	NA	NA	21213	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.020000	0.492537	
mm_71038.1	chr8	33657871	33658071	+	1	NA	NA	NA	4733	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.030000	0.507463	
mm_140863.1	chr17	23755742	23755942	-	1	NA	NA	NA	6606	NR_015472	638247	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	0.045000	0.636816	
mm_2963.1	chr1	132957953	132958153	+	1	NA	NA	NA	67363	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	0.030000	0.472637	
mm_4713.1	chr1	180942415	180942615	+	1	NA	NA	NA	-3	NM_144794	208795	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.105000	0.661692	
mm_5932.1	chr1	55362686	55362886	-	1	NA	NA	NA	-79	NM_001113367	75388	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	bol, boule-like (Drosophila)	protein-coding	0.110000	0.776119	
mm_103007.1	chr11	69695854	69696054	-	1	NA	NA	NA	144	NM_011614	21944	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0.060000	0.631841	
mm_143286.1	chr17	65864588	65864788	-	1	NA	NA	NA	20235	NM_001198949	19765	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.005000	0.407960	60(TTCTCTAAAAAG,-,0.00)
mm_17777.1	chr2	32847180	32847380	-	1	NA	NA	NA	-43	NM_001113569	20910	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0.190000	0.796020	
mm_15977.1	chr2	166541618	166541818	+	1	NA	NA	NA	94267	NR_015558	319684	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.030000	0.547264	
mm_73350.1	chr8	105427540	105427740	+	1	NA	NA	NA	0	NM_001033371	270091	Mm.212709	NM_001033371	ENSMUSG00000054320	Lrrc36	BC036564	leucine rich repeat containing 36	protein-coding	0.030000	0.482587	
mm_143801.1	chr17	83276522	83276722	-	1	NA	NA	NA	61339	NM_134117	106522	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.065000	0.562189	
mm_141120.1	chr17	26095343	26095543	-	1	NA	NA	NA	27	NM_019731	56520	Mm.41787	NM_019731	ENSMUSG00000024177	Nme4	2610027N22Rik|2810024O08Rik|5730493H09Rik|NM23-M4|Nm23M4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding	0.115000	0.731343	-1(CCTTTTCGGGCG,+,0.00)
mm_162957.1	chr11	4260797	4260997	+	1	NA	NA	NA	3329	NM_008501	16878	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.020000	0.601990	
mm_8950.1	chr1	164441513	164441713	-	1	NA	NA	NA	16742	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.050000	0.517413	
mm_73635.1	chr8	110728743	110728943	+	1	NA	NA	NA	3117	NM_001310591	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.045000	0.606965	
mm_38076.1	chr4	134127862	134128062	-	1	NA	NA	NA	791	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.025000	0.572139	
mm_126568.1	chr15	82244684	82244884	+	1	NA	NA	NA	-37	NM_025639	66570	Mm.23596	NM_025639	ENSMUSG00000068101	Cenpm	2610019I03Rik|AI853711|Pane1	centromere protein M	protein-coding	0.085000	0.562189	12(CACTTTTAAAAG,-,0.00),13(ACTTTTAAAAGC,-,0.00),14(CTTTTAAAAGCA,+,0.00)
mm_57807.1	chr6	129428452	129428652	-	1	NA	NA	NA	19690	NM_172732	232414	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0.010000	0.422886	
mm_44710.1	chr5	30907623	30907823	-	1	NA	NA	NA	65	NM_001134692	67695	Mm.21450	NM_024460	ENSMUSG00000038803	Ost4	2310016E02Rik	oligosaccharyltransferase complex subunit 4 (non-catalytic)	protein-coding	0.120000	0.651741	
mm_143329.1	chr17	66449507	66449707	-	1	NA	NA	NA	143	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.125000	0.711443	
mm_117050.1	chr13	58385116	58385316	-	1	NA	NA	NA	9	NM_027335	70153	Mm.296610	NM_027335	ENSMUSG00000021550	2210016F16Rik	-	RIKEN cDNA 2210016F16 gene	protein-coding	0.125000	0.686567	
mm_62542.1	chr7	102310406	102310606	+	1	NA	NA	NA	42682	NM_009287	20866	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0.000000	0.412935	
mm_35742.1	chr4	45397553	45397753	-	1	NA	NA	NA	11113	NM_001009949	230125	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0.005000	0.497512	
mm_100458.1	chr11	119837186	119837386	+	1	NA	NA	NA	-2921	NR_045312	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	0.000000	0.407960	-12(CCCTATTTAAAC,-,0.00)
mm_83569.1	chr9	46328796	46328996	-	1	NA	NA	NA	-8910	NM_183104	74361	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding	0.080000	0.621891	
mm_38496.1	chr4	141053579	141053779	-	1	NA	NA	NA	-18	NM_172122	230872	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	0.035000	0.606965	
mm_29088.1	chr3	104523680	104523880	-	1	NA	NA	NA	-11862	NM_001025067	269473	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0.005000	0.527363	
mm_155341.1	chrX	68495333	68495533	+	1	NA	NA	NA	182966	NR_033481	100038638	Mm.368431	NR_033481	ENSMUSG00000096946	Fmr1os	Asfmr1|ENSMUSG00000073146|Gm10474	fragile X mental retardation syndrome 1, opposite strand	ncRNA	0.000000	0.412935	
mm_62217.1	chr7	98334068	98334268	+	1	NA	NA	NA	-24641	NM_025408	66190	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca	alkaline ceramidase 3	protein-coding	0.005000	0.507463	-3(CCTTTTATATAA,+,0.00)
mm_111120.1	chr12	80967981	80968181	-	1	NA	NA	NA	-2	NM_001177561	20493	Mm.486361	NM_011387	ENSMUSG00000021135	Slc10a1	Ntcp	solute carrier family 10 (sodium/bile acid cotransporter family), member 1	protein-coding	0.015000	0.487562	
mm_71985.1	chr8	70616008	70616208	+	1	NA	NA	NA	-736	NM_153074	211228	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0.005000	0.587065	
mm_94888.1	chr11	27926942	27927142	+	1	NA	NA	NA	657282	NM_001166661	216613	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	0.010000	0.417910	39(CCCTAAAAAGTG,+,0.00)
mm_122170.1	chr14	31472474	31472674	-	1	NA	NA	NA	22403	NM_025907	67011	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	0.015000	0.422886	
mm_128552.1	chr15	55855917	55856117	-	1	NA	NA	NA	50932	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding	0.005000	0.373134	
mm_45695.1	chr5	82124551	82124751	-	1	NA	NA	NA	62	NR_138557	67327	Mm.87058	NR_138557		1700031L13Rik	-	RIKEN cDNA 1700031L13 gene	ncRNA	0.005000	0.353234	
mm_140885.1	chr17	23844088	23844288	-	1	NA	NA	NA	-32	NM_027644	71003	Mm.328839	NM_027644	ENSMUSG00000024114	Prss41	4931440B09Rik|Tessp-1|Tessp1	protease, serine 41	protein-coding	0.050000	0.606965	
mm_108800.1	chr12	91666910	91667110	+	1	NA	NA	NA	-76523	NM_175335	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.005000	0.477612	
mm_156082.1	chrX	109199546	109199746	+	1	NA	NA	NA	2890	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.000000	0.288557	
mm_54996.1	chr6	48833829	48834029	-	1	NA	NA	NA	7059	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.030000	0.492537	
mm_96347.1	chr11	66956470	66956670	+	1	NA	NA	NA	-68	NR_130645	71576	Mm.340077	NR_130315	ENSMUSG00000085683	9130409J20Rik	-	RIKEN cDNA 9130409J20 gene	ncRNA	0.020000	0.582090	
mm_115803.1	chr13	19357847	19358047	-	1	NA	NA	NA	37866	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.020000	0.437811	
mm_56707.1	chr6	115251713	115251913	-	1	NA	NA	NA	36	NM_080639	110595	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	TIMP-4	tissue inhibitor of metalloproteinase 4	protein-coding	0.030000	0.626866	-69(CCTCATAAAGAC,+,0.00)
mm_80391.1	chr9	75626058	75626258	+	1	NA	NA	NA	426	NM_027309	70082	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	0.105000	0.761194	
mm_129390.1	chr15	78204134	78204334	-	1	NA	NA	NA	3	NM_001330686	19293	Mm.2766	NM_013645	ENSMUSG00000005716	Pvalb	PV|Parv|Pva	parvalbumin	protein-coding	0.095000	0.631841	
mm_107609.1	chr12	49384841	49385041	+	1	NA	NA	NA	1934	NM_008241	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.130000	0.716418	
mm_61632.1	chr7	80246413	80246613	+	1	NA	NA	NA	137	NM_177765	269954	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	0.110000	0.681592	
mm_30437.1	chr3	153631023	153631223	-	1	NA	NA	NA	94010	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.000000	0.343284	
mm_153240.1	chr19	36118045	36118245	-	1	NA	NA	NA	1699	NM_013468	107765	Mm.10279	NM_013468	ENSMUSG00000024803	Ankrd1	Alrp|CARP|Crap|MARP1	ankyrin repeat domain 1 (cardiac muscle)	protein-coding	0.015000	0.442786	80(CTCTTTATGAGC,-,0.00)
mm_146512.1	chr18	3337470	3337670	-	1	NA	NA	NA	19	NM_001110851	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.125000	0.671642	
mm_60175.1	chr7	41599194	41599394	+	1	NA	NA	NA	-34237	NM_023363	67607	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	0.050000	0.577114	
mm_146483.1	chr18	90510048	90510248	+	1	NA	NA	NA	-6	NM_198295	67988	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.080000	0.572139	
mm_4072.1	chr1	166165322	166165522	+	1	NA	NA	NA	34962	NM_021610	59290	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197	glycoprotein A33 (transmembrane)	protein-coding	0.010000	0.587065	
mm_28530.1	chr3	92648206	92648406	-	1	NA	NA	NA	1	NM_025984	67127	Mm.41969	NM_025984	ENSMUSG00000057609	Lce1a1	2200008B06Rik|Sprrl3	late cornified envelope 1A1	protein-coding	0.005000	0.517413	-33(CAGTTTAAAAGG,-,0.00),-31(GTTTAAAAGGGC,+,0.00)
mm_168590.1	chr1	173802346	173802546	-	1	NA	NA	NA	-35527	NM_008329	15951	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.010000	0.467662	-37(CCTTTTATATAT,+,0.00)
mm_85389.1	chr9	103230171	103230371	-	1	NA	NA	NA	15	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.080000	0.666667	-33(GTGCATAAAGGC,-,0.00)
mm_115096.1	chr13	102720686	102720886	+	1	NA	NA	NA	27228	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.000000	0.358209	
mm_137028.1	chr17	17887713	17887913	+	1	NA	NA	NA	-11	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.005000	0.417910	
mm_159639.1	chr4	141435976	141436176	-	1	NA	NA	NA	29	NM_001033374	277744	Mm.33952	NM_001033374	ENSMUSG00000070637	Gm694	-	predicted gene 694	protein-coding	0.005000	0.522388	
mm_11705.1	chr2	36136546	36136746	+	1	NA	NA	NA	58	NM_026434	67889	Mm.205937	NM_026434	ENSMUSG00000026889	Rbm18	2010004P11Rik|AU015530	RNA binding motif protein 18	protein-coding	0.115000	0.676617	
mm_48612.1	chr5	144479585	144479785	-	1	NA	NA	NA	-66202	NM_016789	53324	Mm.10099	NM_016789	ENSMUSG00000059991	Nptx2	Narp|np2	neuronal pentraxin 2	protein-coding	0.005000	0.537313	-92(GACTTTTAAGAG,-,0.00),-90(CTTTTAAGAGAA,+,0.00)
mm_32031.1	chr4	95579323	95579523	+	1	NA	NA	NA	2	NM_029347	75578	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.010000	0.457711	
mm_26536.1	chr3	146121605	146121805	+	1	NA	NA	NA	-86	NM_134160	171166	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	0.030000	0.592040	
mm_120924.1	chr14	76442612	76442812	+	1	NA	NA	NA	26891	NM_207652	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.020000	0.353234	
mm_123201.1	chr14	59297420	59297620	-	1	NA	NA	NA	2	NM_172603	219131	Mm.254918	NM_172603	ENSMUSG00000044703	Phf11a	4933417L10Rik|Phf11|Phf11l	PHD finger protein 11A	protein-coding	0.000000	0.502488	
mm_97063.1	chr11	72796105	72796305	+	1	NA	NA	NA	-21	NM_001045536	195018	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	0.105000	0.686567	
mm_88705.1	chr10	80149572	80149772	+	1	NA	NA	NA	-10	NM_001305799	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.095000	0.611940	
mm_158057.1	chrX	101059549	101059749	-	1	NA	NA	NA	-10	NM_001167997	83558	Mm.134024	NM_031384	ENSMUSG00000009670	Tex11	4930565P14Rik|BB024231|ZIP4H	testis expressed gene 11	protein-coding	0.090000	0.601990	
mm_7846.1	chr1	132361023	132361223	-	1	NA	NA	NA	6825	NM_001311108	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.030000	0.592040	
mm_111013.1	chr12	78980688	78980888	-	1	NA	NA	NA	2690	NM_001170401	268567	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.010000	0.492537	
mm_139874.1	chr17	70746971	70747171	+	1	NA	NA	NA	99706	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.005000	0.437811	
mm_106235.1	chr11	117654451	117654651	-	1	NA	NA	NA	262	NM_198022	217351	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.140000	0.681592	
mm_169023.1	chr13	113021920	113022120	-	1	NA	NA	NA	-13359	NM_001281487	238896		NM_001281487	ENSMUSG00000078926	Cdc20b	EG238896|EG622422	cell division cycle 20B	protein-coding	0.055000	0.497512	
mm_98662.1	chr11	96271848	96272048	+	1	NA	NA	NA	618	NM_008270	15417	Mm.258271	NM_008270	ENSMUSG00000020875	Hoxb9	Hox-2.5	homeobox B9	protein-coding	0.100000	0.661692	
mm_118861.1	chr14	25842112	25842312	+	1	NA	NA	NA	57	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.110000	0.676617	
mm_26534.1	chr3	146120658	146120858	+	1	NA	NA	NA	-1033	NM_134160	171166	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	0.005000	0.353234	
mm_76561.1	chr8	88454305	88454505	-	1	NA	NA	NA	-66939	NM_027280	93960	Mm.30219	NM_027280	ENSMUSG00000031661	Nkd1	2810434J10Rik|9030215G15Rik|Nkd	naked cuticle 1 homolog (Drosophila)	protein-coding	0.105000	0.716418	-34(GCCTTTATAAGC,+,0.00),-34(GCCTTTATAAGC,-,0.00)
mm_172922.1	chr9	68152041	68152241	-	1	NA	NA	NA	-126427	NR_045745	434412	Mm.490707	NR_045745	ENSMUSG00000111841	Gm20745	-	predicted gene, 20745	ncRNA	0.030000	0.507463	
mm_21313.1	chr2	157098642	157098842	-	1	NA	NA	NA	11687	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.010000	0.378109	
mm_13541.1	chr2	110721539	110721739	+	1	NA	NA	NA	145	NM_172979	269328	Mm.32566	NM_172979	ENSMUSG00000050808	Muc15	4732460E09|D730046L02Rik|MUC-15	mucin 15	protein-coding	0.015000	0.492537	
mm_49465.1	chr6	29433078	29433278	+	1	NA	NA	NA	25	NM_001081185	68794	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	0.130000	0.805970	
mm_160856.1	chr11	58552236	58552436	-	1	NA	NA	NA	-99	NM_146502	258495	Mm.339498	NM_146502	ENSMUSG00000057654	Olfr328	MOR275-2	olfactory receptor 328	protein-coding	0.000000	0.417910	
mm_116631.1	chr13	48968020	48968220	-	1	NA	NA	NA	8	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.195000	0.840796	-91(CCCCCTAAAGGG,-,0.00),-89(CCCTAAAGGGCC,+,0.00)
mm_139215.1	chr17	47728760	47728960	+	1	NA	NA	NA	2018	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.005000	0.487562	
mm_173279.1	chrY	1480560	1480760	+	1	NA	NA	NA	-20878	NM_148943	107868	Mm.347376	NM_148943	ENSMUSG00000069044	Usp9y	Dffry|Fafl2	ubiquitin specific peptidase 9, Y chromosome	protein-coding	0.050000	0.606965	
mm_65397.1	chr7	25132383	25132583	-	1	NA	NA	NA	-23	NM_001163554	18987	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.040000	0.636816	
mm_115049.1	chr13	100124768	100124968	+	1	NA	NA	NA	13	NM_011420	20595	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	0.085000	0.656716	
mm_168025.1	chrY	90738186	90738386	+	1	NA	NA	NA	16764	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.462687	
mm_36852.1	chr4	106800197	106800397	-	1	NA	NA	NA	-466	NM_025590	329910	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0.030000	0.547264	-34(CTGCTTATAAGG,-,0.00),-32(GCTTATAAGGAA,+,0.00)
mm_162769.1	chr10	67185675	67185875	+	1	NA	NA	NA	25	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.030000	0.492537	
mm_59392.1	chr7	26764362	26764562	+	1	NA	NA	NA	7320	NM_007814	13090	Mm.14098	NM_007814	ENSMUSG00000066704	Cyp2b19	CYPIIB19	cytochrome P450, family 2, subfamily b, polypeptide 19	protein-coding	0.010000	0.507463	
mm_6722.1	chr1	82586653	82586853	-	1	NA	NA	NA	96	NM_007735	12829	Mm.40253	NM_007735	ENSMUSG00000067158	Col4a4	E130010M05Rik|[a]4(IV)	collagen, type IV, alpha 4	protein-coding	0.065000	0.656716	
mm_26956.1	chr3	21489490	21489690	-	1	NA	NA	NA	-587062	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.020000	0.487562	
mm_39070.1	chr4	154139775	154139975	-	1	NA	NA	NA	333	NM_011642	22062	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0.120000	0.721393	
mm_2443.1	chr1	98457632	98457832	+	1	NA	NA	NA	36608	NM_027584	70866	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding	0.035000	0.487562	
mm_97828.1	chr11	83063857	83064057	+	1	NA	NA	NA	-1155	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.010000	0.601990	
mm_159105.1	chr2	38339139	38339339	+	1	NA	NA	NA	-42	NM_001290646	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.150000	0.830846	
mm_9096.1	chr1	169087500	169087700	-	1	NA	NA	NA	443864	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0.010000	0.452736	
mm_165564.1	chr3	14886618	14886818	+	1	NA	NA	NA	292	NM_009801	12349	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0.095000	0.671642	-59(GCCTATAAAAGC,-,0.00)
mm_145724.1	chr18	63981620	63981820	+	1	NA	NA	NA	-272639	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.000000	0.263682	-83(GTTTATAAAGAA,+,0.00)
mm_99069.1	chr11	99168270	99168470	+	1	NA	NA	NA	-13293	NM_007719	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.015000	0.537313	
mm_38000.1	chr4	133673129	133673329	-	1	NA	NA	NA	-582	NM_001145956	230801	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.030000	0.457711	
mm_67760.1	chr7	92741307	92741507	-	1	NA	NA	NA	52	NR_015510	666737	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	0.065000	0.606965	
mm_48806.1	chr5	148967874	148968074	-	1	NA	NA	NA	17724	NR_040686	71473	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	0.015000	0.507463	-34(TGCTATAAAAAG,-,0.00)
mm_42580.1	chr5	117274554	117274754	+	1	NA	NA	NA	12910	NM_018858	23980	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	0.025000	0.452736	
mm_42152.1	chr5	111454816	111455016	+	1	NA	NA	NA	36750	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.015000	0.383085	
mm_110285.1	chr12	32123520	32123720	-	1	NA	NA	NA	-62341	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.015000	0.402985	
mm_109664.1	chr12	113022435	113022635	+	1	NA	NA	NA	8027	NM_001291444	217893	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.005000	0.442786	40(GCCTATAAACAC,+,0.00)
mm_144245.1	chr18	10747777	10747977	+	1	NA	NA	NA	22252	NM_144860	225164	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0.000000	0.313433	
mm_44796.1	chr5	32746229	32746429	-	1	NA	NA	NA	13	NM_001347332	320951	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.025000	0.587065	
mm_115615.1	chr13	12053826	12054026	-	1	NA	NA	NA	53019	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.005000	0.442786	
mm_47684.1	chr5	129002623	129002823	-	1	NA	NA	NA	5849	NM_001286034	13852	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	0.020000	0.522388	
mm_27080.1	chr3	30012912	30013112	-	1	NA	NA	NA	192	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.035000	0.587065	
mm_146762.1	chr18	16809007	16809207	-	1	NA	NA	NA	139	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.110000	0.751244	
mm_111315.1	chr12	85824465	85824665	-	1	NA	NA	NA	-20	NM_021446	58520	Mm.143795	NM_021446	ENSMUSG00000021252	0610007P14Rik	1190004E09Rik|AU019315|C77855|ORF11	RIKEN cDNA 0610007P14 gene	protein-coding	0.040000	0.587065	
mm_87190.1	chr10	39419961	39420161	+	1	NA	NA	NA	50262	NM_001122893	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.020000	0.487562	
mm_1375.1	chr1	66696605	66696805	+	1	NA	NA	NA	-4126	NM_025683	66646	Mm.240912	NM_025683	ENSMUSG00000026005	Rpe	2810429B02Rik|5730518J08Rik	ribulose-5-phosphate-3-epimerase	protein-coding	0.005000	0.303483	
mm_109117.1	chr12	105589981	105590181	+	1	NA	NA	NA	-14010	NM_007539	12061	Mm.377078	NM_007539	ENSMUSG00000041347	Bdkrb1	B1BKR|B1R|BKR1|BRADYB1|Bdkrb	bradykinin receptor, beta 1	protein-coding	0.005000	0.462687	
mm_144327.1	chr18	12972170	12972370	+	1	NA	NA	NA	18	NM_008378	16210	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	0.040000	0.562189	
mm_90853.1	chr10	8814309	8814509	-	1	NA	NA	NA	71661	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.045000	0.497512	
mm_150547.1	chr19	39315593	39315793	+	1	NA	NA	NA	28608	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.000000	0.218905	
mm_134082.1	chr16	8737637	8737837	-	1	NA	NA	NA	605	NM_001003918	252870	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.075000	0.616915	
mm_22978.1	chr3	32817494	32817694	+	1	NA	NA	NA	-32	NM_001013024	72607	Mm.316153	NM_001013024	ENSMUSG00000056900	Usp13	2700071E21Rik|AI848077|ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding	0.140000	0.751244	
mm_97780.1	chr11	82387372	82387572	+	1	NA	NA	NA	-1428	NM_001304439	270893	Mm.341593	NM_023438	ENSMUSG00000020701	Tmem132e	Gm644	transmembrane protein 132E	protein-coding	0.105000	0.676617	
mm_127146.1	chr15	98532504	98532704	+	1	NA	NA	NA	1665	NM_001289438	69612	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	0.025000	0.452736	
mm_151154.1	chr19	53184334	53184534	+	1	NA	NA	NA	40437	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.040000	0.472637	
mm_86079.1	chr9	114781695	114781895	-	1	NA	NA	NA	198	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.115000	0.766169	
mm_43439.1	chr5	136093198	136093398	+	1	NA	NA	NA	9382	NM_001039103	54153	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.050000	0.656716	
mm_161545.1	chr16	4213228	4213428	-	1	NA	NA	NA	76	NM_001025432	12914	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0.165000	0.800995	
mm_67839.1	chr7	98491708	98491908	-	1	NA	NA	NA	-2414	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.010000	0.572139	
mm_171347.1	chr4	10848299	10848499	+	1	NA	NA	NA	-26099	NM_026005	67157	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	0.020000	0.512438	
mm_34141.1	chr4	139310663	139310863	+	1	NA	NA	NA	19	NM_025337	110198	Mm.482154	NM_025337	ENSMUSG00000028743	Akr7a5	0610025K21Rik|Afar|Afar1|Akr7a2	aldo-keto reductase family 7, member A5 (aflatoxin aldehyde reductase)	protein-coding	0.140000	0.736318	
mm_126646.1	chr15	83792048	83792248	+	1	NA	NA	NA	12125	NM_172610	223726	Mm.36395	NM_172610	ENSMUSG00000041708	Mpped1	6230403M19|AW456965|D15Bwg0669e	metallophosphoesterase domain containing 1	protein-coding	0.040000	0.606965	
mm_71310.1	chr8	43180375	43180575	+	1	NA	NA	NA	-2647	NM_001160412	622117	Mm.390031	NM_001160412	ENSMUSG00000091490	Triml2	EG622117|Tu4	tripartite motif family-like 2	protein-coding	0.040000	0.487562	
mm_23375.1	chr3	55533687	55533887	+	1	NA	NA	NA	72029	NM_001195540	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.020000	0.477612	-20(CCTTTAAGACTC,+,0.00)
mm_97848.1	chr11	83068309	83068509	+	1	NA	NA	NA	3297	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.005000	0.467662	
mm_117214.1	chr13	64089284	64089484	-	1	NA	NA	NA	-183	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.005000	0.427861	
mm_16813.1	chr2	11332459	11332659	-	1	NA	NA	NA	-6930	NR_040369	100503147	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	OTTMUSG00000011311	predicted gene 13293	ncRNA	0.005000	0.452736	
mm_103076.1	chr11	69895370	69895570	-	1	NA	NA	NA	69	NM_153788	216859	Mm.288671	NM_153788	ENSMUSG00000001588	Acap1	Centb1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein-coding	0.010000	0.601990	33(CCATTAATACCC,+,0.00)
mm_1319.1	chr1	65100412	65100612	+	1	NA	NA	NA	2851	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.040000	0.552239	-91(GCATATATGGGC,+,0.00)
mm_60890.1	chr7	46397008	46397208	+	1	NA	NA	NA	640	NM_001112739	16502	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.085000	0.671642	
mm_11911.1	chr2	52038002	52038202	+	1	NA	NA	NA	-11	NM_009398	21930	Mm.3509	NM_009398	ENSMUSG00000053475	Tnfaip6	TSG-6|Tnfip6|Tsg6	tumor necrosis factor alpha induced protein 6	protein-coding	0.055000	0.487562	
mm_162396.1	chr1	82452514	82452714	-	1	NA	NA	NA	113565	NM_001122685	76867	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	0.005000	0.333333	42(GTTTTTAAAAAG,-,0.00)
mm_130090.1	chr15	89379503	89379703	-	1	NA	NA	NA	-349	NM_001013022	70113	Mm.247273	NM_001013022	ENSMUSG00000047394	Odf3b	2010001J22Rik	outer dense fiber of sperm tails 3B	protein-coding	0.020000	0.621891	72(GCCCCTAAAAGG,-,0.00),74(CCCTAAAAGGGC,+,0.00)
mm_3138.1	chr1	135133164	135133364	+	1	NA	NA	NA	539	NM_177081	320139	Mm.258388	NM_177081	ENSMUSG00000031506	Ptpn7	BPTP-4|C920001D21Rik|HEPTP|LC-PTP|LPTP	protein tyrosine phosphatase, non-receptor type 7	protein-coding	0.030000	0.587065	
mm_115993.1	chr13	24383940	24384140	-	1	NA	NA	NA	-31082	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.010000	0.407960	
mm_42034.1	chr5	108388323	108388523	+	1	NA	NA	NA	50	NM_008806	18587	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0.015000	0.547264	
mm_21115.1	chr2	153492426	153492626	-	1	NA	NA	NA	37445	NM_001134300	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.140000	0.825871	
mm_18509.1	chr2	62617186	62617386	-	1	NA	NA	NA	28969	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.020000	0.437811	
mm_158484.1	chrX	142306079	142306279	-	1	NA	NA	NA	19	NM_021487	66240	Mm.58507	NM_021487	ENSMUSG00000090122	Kcne1l	1500015C14Rik|Kcne5|Mink	potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	protein-coding	0.050000	0.691542	
mm_56949.1	chr6	119970925	119971125	-	1	NA	NA	NA	63286	NR_030487	735290		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	0.010000	0.313433	
mm_34751.1	chr4	152297395	152297595	+	1	NA	NA	NA	281	NM_133788	57295	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|OTTMUSG00000010406|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	0.140000	0.746269	
mm_26608.1	chr3	152231876	152232076	+	1	NA	NA	NA	21518	NM_057172	51886	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	0.015000	0.507463	
mm_82539.1	chr9	20814922	20815122	-	1	NA	NA	NA	45	NM_001317388	53867	Mm.334994	NM_016919	ENSMUSG00000004098	Col5a3	-	collagen, type V, alpha 3	protein-coding	0.060000	0.681592	
mm_17394.1	chr2	27112110	27112310	-	1	NA	NA	NA	30267	NM_175427	109349	Mm.314080	NM_175427	ENSMUSG00000009216	Fam163b	C630035N08Rik	family with sequence similarity 163, member B	protein-coding	0.000000	0.572139	
mm_89164.1	chr10	86186722	86186922	+	1	NA	NA	NA	90968	NR_038024	78170	Mm.444790	NR_038024		4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0.010000	0.487562	
mm_3966.1	chr1	164151739	164151939	+	1	NA	NA	NA	4	NM_007976	14067	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	0.015000	0.587065	
mm_120947.1	chr14	76694134	76694334	+	1	NA	NA	NA	16666	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.030000	0.522388	
mm_26138.1	chr3	137918442	137918642	+	1	NA	NA	NA	-13	NM_019920	56692	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0.095000	0.661692	
mm_171234.1	chr3	68902736	68902936	-	1	NA	NA	NA	33250	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.080000	0.686567	
mm_172593.1	chr8	128753509	128753709	-	1	NA	NA	NA	67955	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.080000	0.552239	
mm_56488.1	chr6	99173495	99173695	-	1	NA	NA	NA	92920	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.025000	0.388060	-33(CTGTTTAAAAAG,-,0.00)
mm_58113.1	chr6	138423019	138423219	-	1	NA	NA	NA	14	NR_126072	319702	Mm.403785	NR_126072	ENSMUSG00000089957	A830011K09Rik	-	RIKEN cDNA A830011K09 gene	ncRNA	0.025000	0.522388	
mm_171442.1	chr4	142069442	142069642	-	1	NA	NA	NA	-14756	NR_027137	100038693	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	ENSMUSG00000073728|Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.025000	0.512438	-41(CTGTATAAAGAG,-,0.00)
mm_11471.1	chr2	32363587	32363787	+	1	NA	NA	NA	489	NM_028412	68379	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	0.040000	0.572139	-32(GGGTATAAATGC,-,0.00)
mm_63369.1	chr7	127091338	127091538	+	1	NA	NA	NA	2	NM_178901	101602	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	0.040000	0.587065	
mm_141059.1	chr17	25754233	25754433	-	1	NA	NA	NA	-6	NM_018857	56047	Mm.17510	NM_018857	ENSMUSG00000063011	Msln	MPF	mesothelin	protein-coding	0.015000	0.582090	
mm_114130.1	chr13	55211723	55211923	+	1	NA	NA	NA	2041	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.150000	0.776119	
mm_136598.1	chr17	5090002	5090202	+	1	NA	NA	NA	95028	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.010000	0.512438	84(GAATTTAAAAGC,-,0.00)
mm_58967.1	chr7	18991202	18991402	+	1	NA	NA	NA	57	NM_145579	232934	Mm.440069	NM_145579	ENSMUSG00000048481	Mypop	Myodysa|P42pop	Myb-related transcription factor, partner of profilin	protein-coding	0.080000	0.706468	
mm_165899.1	chr4	46601835	46602035	-	1	NA	NA	NA	-6	NM_001164804	107684	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.195000	0.850746	
mm_4280.1	chr1	171630537	171630737	+	1	NA	NA	NA	11263	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.000000	0.402985	9(TCTTATATAGTC,+,0.00)
mm_114591.1	chr13	75761781	75761981	+	1	NA	NA	NA	54397	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.005000	0.363184	43(ATGTATTTAAGG,-,0.00)
mm_51499.1	chr6	83108864	83109064	+	1	NA	NA	NA	-144	NM_026744	68499	Mm.333183	NM_026744	ENSMUSG00000030037	Mrpl53	1110007K17Rik	mitochondrial ribosomal protein L53	protein-coding	0.080000	0.611940	
mm_73338.1	chr8	105305496	105305696	+	1	NA	NA	NA	-5	NM_172760	234683	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	0.040000	0.646766	
mm_105265.1	chr11	102360468	102360668	-	1	NA	NA	NA	4713	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.005000	0.507463	
mm_18955.1	chr2	76789405	76789605	-	1	NA	NA	NA	114190	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.020000	0.497512	
mm_150442.1	chr19	37784134	37784334	+	1	NA	NA	NA	86426	NM_007811	13082	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0.030000	0.497512	
mm_64171.1	chr7	141455107	141455307	+	1	NA	NA	NA	19	NM_001163689	66853	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0.090000	0.681592	
mm_97231.1	chr11	75652122	75652322	+	1	NA	NA	NA	72	NM_001080774	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.030000	0.492537	
mm_109596.1	chr12	112644827	112645027	+	1	NA	NA	NA	99	NM_013929	30954	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.145000	0.726368	
mm_91803.1	chr10	53751085	53751285	-	1	NA	NA	NA	-276	NM_001081428	75906	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0.165000	0.796020	
mm_132329.1	chr16	33805933	33806133	+	1	NA	NA	NA	11996	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.000000	0.338308	
mm_61087.1	chr7	51622430	51622630	+	1	NA	NA	NA	700	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.020000	0.487562	
mm_66727.1	chr7	46238405	46238605	-	1	NA	NA	NA	-15	NM_153677	72088	Mm.119709	NM_023649	ENSMUSG00000030838	Ush1c	2010016F01Rik|harmonin	Usher syndrome 1C	protein-coding	0.020000	0.611940	
mm_57044.1	chr6	122340494	122340694	-	1	NA	NA	NA	-367	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.040000	0.437811	
mm_15681.1	chr2	163602202	163602402	+	1	NA	NA	NA	-12	NM_181734	76080	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.130000	0.726368	
mm_94203.1	chr11	3103441	3103641	+	1	NA	NA	NA	-20480	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.030000	0.378109	
mm_8428.1	chr1	152550509	152550709	-	1	NA	NA	NA	74608	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.005000	0.457711	
mm_4164.1	chr1	171029335	171029535	+	1	NA	NA	NA	10509	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.000000	0.417910	
mm_58240.1	chr6	145047581	145047781	-	1	NA	NA	NA	1131	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.045000	0.522388	-3(CTTTATAAATGG,-,0.00)
mm_81446.1	chr9	109812195	109812395	+	1	NA	NA	NA	-4332	NM_183136	78709	Mm.99613	NM_183136	ENSMUSG00000050074	Spink8	C630041L24Rik	serine peptidase inhibitor, Kazal type 8	protein-coding	0.005000	0.442786	
mm_13041.1	chr2	91082308	91082508	+	1	NA	NA	NA	-12093	NM_001290765	68427	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.015000	0.542289	
mm_165689.1	chr3	92813419	92813619	-	1	NA	NA	NA	-5628	NM_001254760	631101	Mm.250525	NM_001254760	ENSMUSG00000095870	Lce1k	Gm7055|Sprrl6	late cornified envelope 1K	protein-coding	0.005000	0.348259	
mm_89896.1	chr10	110931898	110932098	+	1	NA	NA	NA	11822	NM_007792	13008	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	0.060000	0.587065	
mm_99214.1	chr11	101024873	101025073	+	1	NA	NA	NA	-5367	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.000000	0.368159	
mm_150714.1	chr19	43281134	43281334	+	1	NA	NA	NA	107121	NM_001081257	545291	Mm.442200	NM_001081257	ENSMUSG00000074852	Hpse2	Gm968|Hpa2	heparanase 2	protein-coding	0.005000	0.363184	
mm_138317.1	chr17	34836918	34837118	+	1	NA	NA	NA	-1	NM_033613	112403	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	0.120000	0.681592	
mm_60700.1	chr7	45176048	45176248	+	1	NA	NA	NA	2845	NR_106022	102465638		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0.060000	0.651741	
mm_58363.1	chr6	148444223	148444423	-	1	NA	NA	NA	29	NM_001347518	387314	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0.150000	0.781095	
mm_83564.1	chr9	46315801	46316001	-	1	NA	NA	NA	4085	NM_183104	74361	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding	0.020000	0.507463	
mm_150054.1	chr19	29382403	29382603	+	1	NA	NA	NA	15065	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.010000	0.487562	
mm_98046.1	chr11	85688225	85688425	+	1	NA	NA	NA	31419	NR_045875	71489	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.015000	0.412935	
mm_111982.1	chr12	110471284	110471484	-	1	NA	NA	NA	-14355	NM_001081457	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.015000	0.512438	
mm_55313.1	chr6	54992816	54993016	-	1	NA	NA	NA	-49	NM_026637	110175	Mm.294708	NM_026637	ENSMUSG00000002797	Ggct	A030007L17Rik|AA673177|Gctg|Ggc	gamma-glutamyl cyclotransferase	protein-coding	0.095000	0.636816	
mm_114445.1	chr13	66589077	66589277	+	1	NA	NA	NA	-148059	NM_001290196	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.015000	0.527363	
mm_35787.1	chr4	46469904	46470104	-	1	NA	NA	NA	19078	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.015000	0.442786	
mm_83513.1	chr9	46009681	46009881	-	1	NA	NA	NA	-3039	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.005000	0.487562	
mm_164115.1	chr15	31595731	31595931	-	1	NA	NA	NA	5973	NM_007637	12465	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	0.020000	0.487562	
mm_54816.1	chr6	42350362	42350562	-	1	NA	NA	NA	634	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.055000	0.641791	
mm_32166.1	chr4	100160027	100160227	+	1	NA	NA	NA	64336	NM_001312690	26563	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding	0.000000	0.278607	19(CCTTATCTAGGA,+,0.00)
mm_58481.1	chr7	3570864	3571064	+	1	NA	NA	NA	45193	NM_175632	232790	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	0.015000	0.447761	
mm_112999.1	chr13	21753991	21754191	+	1	NA	NA	NA	-32	NM_178201	319187		NM_178201	ENSMUSG00000095217	Hist1h2bn	-	histone cluster 1, H2bn	protein-coding	0.040000	0.497512	-48(TTGTTTAAAAGG,-,0.00)
mm_131171.1	chr16	7069644	7069844	+	1	NA	NA	NA	-91	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.025000	0.482587	
mm_153447.1	chr19	41020571	41020771	-	1	NA	NA	NA	-8604	NM_001043228	21673	Mm.25620	NM_009345	ENSMUSG00000025014	Dntt	Tdt	deoxynucleotidyltransferase, terminal	protein-coding	0.005000	0.477612	
mm_90347.1	chr10	127150643	127150843	+	1	NA	NA	NA	-14413	NR_045166	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.010000	0.482587	-65(GTTTTTAAATCC,+,0.00)
mm_70629.1	chr8	13757589	13757789	+	1	NA	NA	NA	-1	NM_027276	69957	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	0.130000	0.726368	
mm_163568.1	chr13	28950233	28950433	-	1	NA	NA	NA	3349	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.020000	0.358209	-78(CTCTTTAAAAGG,-,0.00),-77(TCTTTAAAAGGA,+,0.00)
mm_152850.1	chr19	24042457	24042657	-	1	NA	NA	NA	-11538	NM_001114174	381217	Mm.426078	NM_001114174	ENSMUSG00000071604	Fam189a2	AI414343|AI666772|Gm967	family with sequence similarity 189, member A2	protein-coding	0.010000	0.512438	
mm_94141.1	chr10	128721121	128721321	-	1	NA	NA	NA	14963	NM_021882	20431	Mm.16756	NM_021882	ENSMUSG00000025359	Pmel	D10H12S53E|D12S53Eh|Pmel17|Si|Silv|gp100|gp87	premelanosome protein	protein-coding	0.045000	0.577114	
mm_166909.1	chr7	29281488	29281688	-	1	NA	NA	NA	389	NM_001082548	20733	Mm.295230	NM_011464	ENSMUSG00000074227	Spint2	AL024025|C76321|HAI-2	serine protease inhibitor, Kunitz type 2	protein-coding	0.115000	0.741294	
mm_27365.1	chr3	50436408	50436608	-	1	NA	NA	NA	7105	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.427861	
mm_18812.1	chr2	74521880	74522080	-	1	NA	NA	NA	56968	NM_001110209	69605	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	0.005000	0.328358	
mm_150134.1	chr19	30060282	30060482	+	1	NA	NA	NA	29869	NM_144873	109113	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0.000000	0.298507	
mm_92518.1	chr10	78574772	78574972	-	1	NA	NA	NA	372	NM_173751	216136	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0.045000	0.547264	
mm_163877.1	chr14	19419522	19419722	-	1	NA	NA	NA	182965	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.010989	0.327869	
mm_163486.1	chr12	109453460	109453660	+	1	NA	NA	NA	105	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.130000	0.746269	
mm_14106.1	chr2	125673067	125673267	+	1	NA	NA	NA	67	NM_025613	58521	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	0.110000	0.636816	
mm_18519.1	chr2	62773312	62773512	-	1	NA	NA	NA	109085	NM_145523	227960	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0.005000	0.353234	
mm_34180.1	chr4	140700241	140700441	+	1	NA	NA	NA	-1132	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.035000	0.502488	
mm_38424.1	chr4	139193898	139194098	-	1	NA	NA	NA	-113	NM_001271405	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.040000	0.616915	
mm_167954.1	chrX	140956847	140957047	+	1	NA	NA	NA	-236	NM_001164177	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	0.020000	0.522388	
mm_82570.1	chr9	21079384	21079584	-	1	NA	NA	NA	-3896	NR_106050	102465656		NR_106050	ENSMUSG00000098907	Mir7082	Gm27933|mmu-mir-7082	microRNA 7082	ncRNA	0.010000	0.592040	
mm_16759.1	chr2	9875297	9875497	-	1	NA	NA	NA	3203	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.020000	0.532338	
mm_121245.1	chr14	103057131	103057331	+	1	NA	NA	NA	10219	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.030000	0.492537	
mm_128088.1	chr15	27772156	27772356	-	1	NA	NA	NA	-90714	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.015000	0.427861	
mm_133512.1	chr16	90738393	90738593	+	1	NA	NA	NA	169	NM_029844	77037	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.045000	0.587065	
mm_26646.1	chr3	153958301	153958501	+	1	NA	NA	NA	-13758	NM_007382	11364	Mm.10530	NM_007382	ENSMUSG00000062908	Acadm	AU018656|MCAD	acyl-Coenzyme A dehydrogenase, medium chain	protein-coding	0.015000	0.442786	-32(AGGTATAAAAAG,-,0.00)
mm_159421.1	chr3	108092730	108092930	+	1	NA	NA	NA	-236	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	0.020000	0.497512	
mm_87768.1	chr10	60293305	60293505	+	1	NA	NA	NA	8944	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.547264	86(GGCCCTTTAAGG,-,0.00),87(GCCCTTTAAGGC,-,0.00),88(CCCTTTAAGGCA,+,0.00),89(CCTTTAAGGCAC,+,0.00)
mm_160454.1	chr8	106603365	106603565	+	1	NA	NA	NA	115	NM_009864	12550	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	0.085000	0.666667	
mm_137148.1	chr17	23673896	23674096	+	1	NA	NA	NA	-226	NM_001008425	386612	Mm.328831	NM_001008425	ENSMUSG00000041319	Thoc6	F830014G06Rik|Wdr58	THO complex 6	protein-coding	0.060000	0.646766	
mm_29081.1	chr3	104174517	104174717	-	1	NA	NA	NA	45789	NM_133853	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	0.005000	0.323383	-80(GCTCTTAAACGC,+,0.00),-7(TTTTTTATAGTA,+,0.00)
mm_70356.1	chr8	5639425	5639625	+	1	NA	NA	NA	-534238	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.055000	0.517413	
mm_147953.1	chr18	67034405	67034605	-	1	NA	NA	NA	-53793	NM_177137	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.000000	0.378109	
mm_77866.1	chr9	5332726	5332926	+	1	NA	NA	NA	-12650	NM_009808	12364	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0.005000	0.398010	
mm_159759.1	chr5	90303997	90304197	-	1	NA	NA	NA	62088	NM_030886	81702	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0.000000	0.338308	
mm_61216.1	chr7	64287596	64287796	+	1	NA	NA	NA	26	NM_172742	233315	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0.120000	0.741294	
mm_126569.1	chr15	82244733	82244933	+	1	NA	NA	NA	-86	NM_025639	66570	Mm.23596	NM_025639	ENSMUSG00000068101	Cenpm	2610019I03Rik|AI853711|Pane1	centromere protein M	protein-coding	0.070000	0.557214	-37(CACTTTTAAAAG,-,0.00),-36(ACTTTTAAAAGC,-,0.00),-35(CTTTTAAAAGCA,+,0.00)
mm_95732.1	chr11	54626439	54626639	+	1	NA	NA	NA	30393	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.010000	0.368159	
mm_89746.1	chr10	99189391	99189591	+	1	NA	NA	NA	-73740	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.030000	0.442786	
mm_27410.1	chr3	51340720	51340920	-	1	NA	NA	NA	-176	NM_023502	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.130000	0.756219	-34(GAGTATAAATAG,-,0.00)
mm_162429.1	chr1	93489833	93490033	+	1	NA	NA	NA	10872	NM_001159719	18000	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	0.010000	0.497512	
mm_109688.1	chr12	113142749	113142949	+	1	NA	NA	NA	2244	NM_001347443	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.030000	0.606965	
mm_48429.1	chr5	140609587	140609787	-	1	NA	NA	NA	2346	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.030000	0.631841	
mm_150858.1	chr19	45015078	45015278	+	1	NA	NA	NA	2	NM_145503	226154	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.070000	0.661692	
mm_75907.1	chr8	71381604	71381804	-	1	NA	NA	NA	248	NM_010150	13864	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	0.155000	0.746269	
mm_125988.1	chr15	76351194	76351394	+	1	NA	NA	NA	0	NM_001164607	68877	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	0.070000	0.592040	
mm_138881.1	chr17	43360340	43360540	+	1	NA	NA	NA	-29026	NM_001081178	224792	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	0.040000	0.587065	
mm_34251.1	chr4	141284711	141284911	+	1	NA	NA	NA	-16410	NM_010139	13836	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	0.015000	0.502488	
mm_83384.1	chr9	44581424	44581624	-	1	NA	NA	NA	-23368	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.005000	0.388060	6(CCCTTAATGGGC,+,0.00)
mm_63360.1	chr7	127021298	127021498	+	1	NA	NA	NA	-187	NM_001102563	69017	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.055000	0.671642	
mm_166313.1	chr5	108694344	108694544	+	1	NA	NA	NA	215	NM_054071	116701	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0.155000	0.830846	
mm_61445.1	chr7	75572939	75573139	+	1	NA	NA	NA	117505	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.020000	0.398010	
mm_109468.1	chr12	111417390	111417590	+	1	NA	NA	NA	45	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.020000	0.562189	
mm_109518.1	chr12	111454336	111454536	+	1	NA	NA	NA	11775	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.000000	0.497512	
mm_154416.1	chrM	15521	15721	+	1	NA	NA	NA	NA	NA									0.010000	0.338308	
mm_34963.1	chr4	156008524	156008724	+	1	NA	NA	NA	-5071	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.010000	0.472637	
mm_46319.1	chr5	100674156	100674356	-	1	NA	NA	NA	0	NM_027978	71883	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0.150000	0.756219	
mm_120445.1	chr14	65968436	65968636	+	1	NA	NA	NA	53	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.050000	0.611940	75(CGCTATAAATAG,-,0.00)
mm_105536.1	chr11	106301348	106301548	-	1	NA	NA	NA	448	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.025000	0.592040	
mm_25045.1	chr3	98299075	98299275	+	1	NA	NA	NA	18744	NM_008256	15360	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.000000	0.492537	
mm_13582.1	chr2	112377140	112377340	+	1	NA	NA	NA	-1971	NM_024254	72425	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	0.030000	0.422886	
mm_55834.1	chr6	83125062	83125262	-	1	NA	NA	NA	-133	NM_023547	70020	Mm.27814	NM_023547	ENSMUSG00000030034	Ino80b	2510009I23Rik|HMG1YL4|Hmga1l4|Papa1|Znhit4	INO80 complex subunit B	protein-coding	0.065000	0.537313	
mm_24006.1	chr3	87357872	87358072	+	1	NA	NA	NA	91	NM_009690	11801	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	0.005000	0.512438	
mm_91949.1	chr10	60957977	60958177	-	1	NA	NA	NA	-2646	NR_130327	100316671		NR_130327	ENSMUSG00000080526	Mir466j	Mirn466j|mmu-mir-466j	microRNA 466j	ncRNA	0.035000	0.582090	-31(CCTTTTATGCTC,+,0.00)
mm_167794.1	chr9	123924671	123924871	-	1	NA	NA	NA	43921	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.135000	0.731343	
mm_122298.1	chr14	34590191	34590391	-	1	NA	NA	NA	-1610	NM_001039073	24131	Mm.29733	NM_011918	ENSMUSG00000021798	Ldb3	AW742271|PDLIM6|ZASP	LIM domain binding 3	protein-coding	0.010000	0.557214	-34(CCCTTTAAGAGC,+,0.00),-34(CCCTTTAAGAGC,-,0.00),-33(CCTTTAAGAGCA,+,0.00)
mm_164618.1	chr17	31162589	31162789	-	1	NA	NA	NA	2364	NM_009362	21784	Mm.2854	NM_009362	ENSMUSG00000024032	Tff1	Bcei|PS2	trefoil factor 1	protein-coding	0.035000	0.557214	
mm_35034.1	chr4	4133714	4133914	-	1	NA	NA	NA	4631	NM_001002927	18619	Mm.475097	NM_001002927	ENSMUSG00000045573	Penk	AI326464|ENK|PPA|Penk1	preproenkephalin	protein-coding	0.035000	0.507463	
mm_112476.1	chr13	5868655	5868855	+	1	NA	NA	NA	7266	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.015000	0.348259	
mm_102391.1	chr11	58991653	58991853	-	1	NA	NA	NA	13660	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.005000	0.427861	75(TCTTTTAAATAC,+,0.00)
mm_1557.1	chr1	73024512	73024712	+	1	NA	NA	NA	26	NR_038002	69449	Mm.250447	NR_038001	ENSMUSG00000101968	1700027A15Rik	-	RIKEN cDNA 1700027A15 gene	ncRNA	0.010000	0.512438	-32(TCTTATAAAGGG,+,0.00)
mm_20346.1	chr2	127705675	127705875	-	1	NA	NA	NA	24122	NM_145532	228576	Mm.133036	NM_145532	ENSMUSG00000027377	Mall	BC012256|BENE	mal, T cell differentiation protein-like	protein-coding	0.025000	0.487562	
mm_125653.1	chr15	62981066	62981266	+	1	NA	NA	NA	498442	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA	0.005000	0.557214	
mm_80537.1	chr9	80306865	80307065	+	1	NA	NA	NA	141931	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.040000	0.522388	
mm_167481.1	chr8	129233944	129234144	-	1	NA	NA	NA	2	NM_153780	72139	Mm.426514	NM_153780	ENSMUSG00000071302	2610044O15Rik8	2610044O15Rik	RIKEN cDNA 2610044O15 gene	protein-coding	0.030000	0.537313	
mm_112353.1	chr12	118301862	118302062	-	1	NA	NA	NA	-522	NM_001166385	20688	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0.095000	0.676617	
mm_135443.1	chr16	45454853	45455053	-	1	NA	NA	NA	38016	NM_001005854	208166	Mm.451852	NM_001005854	ENSMUSG00000053182	Gm609	Gm1749|isec1	predicted gene 609	protein-coding	0.000000	0.398010	
mm_33238.1	chr4	127023320	127023520	+	1	NA	NA	NA	2119	NM_023603	71514	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|OTTMUSG00000009329|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.035000	0.487562	
mm_86467.1	chr10	4482411	4482611	+	1	NA	NA	NA	-27361	NM_001195672	100504234	Mm.291807	NM_001195672	ENSMUSG00000019767	Ccdc170	Gm221	coiled-coil domain containing 170	protein-coding	0.035000	0.616915	
mm_148659.1	chr19	5560109	5560309	+	1	NA	NA	NA	366	NM_019935	18426	Mm.280225	NM_019935	ENSMUSG00000024922	Ovol1	BB147136|Ovo1|movo1	ovo like zinc finger 1	protein-coding	0.140000	0.691542	
mm_13548.1	chr2	112239391	112239591	+	1	NA	NA	NA	-350	NM_207206	99010	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.090000	0.716418	
mm_132318.1	chr16	33755480	33755680	+	1	NA	NA	NA	-38457	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.025000	0.527363	
mm_167307.1	chr8	60524138	60524338	+	1	NA	NA	NA	18114	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.030000	0.522388	
mm_11148.1	chr2	28513263	28513463	+	1	NA	NA	NA	196	NM_001145834	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.170000	0.781095	
mm_167890.1	chrX	61123444	61123644	+	1	NA	NA	NA	7166	NR_030706	331424	Mm.127263	NM_177916	ENSMUSG00000071753	C230004F18Rik	-	RIKEN cDNA C230004F18 gene	ncRNA	0.000000	0.333333	
mm_147277.1	chr18	39389326	39389526	-	1	NA	NA	NA	97819	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.020000	0.582090	
mm_142545.1	chr17	46556073	46556273	-	1	NA	NA	NA	-11	NM_020493	20807	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0.095000	0.701493	-73(CGCCATATAAGG,-,0.00),-71(CCATATAAGGAG,+,0.00),-53(CGCCATAAAAGG,-,0.00),-30(CTCTTTATATGG,-,0.00),-28(CTTTATATGGGG,+,0.00)
mm_108017.1	chr12	73598364	73598564	+	1	NA	NA	NA	13668	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.025000	0.542289	
mm_154016.1	chr19	53255091	53255291	-	1	NA	NA	NA	14	NR_036590	69319	Mm.57452	NR_036590		1700001K23Rik	-	RIKEN cDNA 1700001K23 gene	ncRNA	0.005000	0.497512	
mm_169651.1	chr1	55444960	55445160	-	1	NA	NA	NA	39114	NM_001114663	227120	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.025000	0.552239	-15(AACCTTAAAAGG,-,0.00),-13(CCTTAAAAGGGG,+,0.00)
mm_11657.1	chr2	34976603	34976803	+	1	NA	NA	NA	-14931	NM_001326601	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.025000	0.537313	
mm_74739.1	chr8	18768102	18768302	-	1	NA	NA	NA	-26640	NM_007426	11601	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	0.025000	0.462687	-100(CTTTTTAAAGCT,+,0.00)
mm_132418.1	chr16	35154800	35155000	+	1	NA	NA	NA	-736	NM_001012765	224129	Mm.41137	NM_001012765	ENSMUSG00000022840	Adcy5	AW121902|Ac5	adenylate cyclase 5	protein-coding	0.190000	0.855721	
mm_145023.1	chr18	38993160	38993360	+	1	NA	NA	NA	115	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.110000	0.726368	
mm_105755.1	chr11	109473043	109473243	-	1	NA	NA	NA	86	NM_134038	104681	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.085000	0.721393	
mm_143427.1	chr17	70850256	70850456	-	1	NA	NA	NA	-566	NM_001164076	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.040000	0.412935	-6(TTTTTTAAAGAG,+,0.00)
mm_7917.1	chr1	133753411	133753611	-	1	NA	NA	NA	236	NM_001167949	381290	Mm.188617	NM_213616	ENSMUSG00000026463	Atp2b4	Pmca4	ATPase, Ca++ transporting, plasma membrane 4	protein-coding	0.020000	0.447761	
mm_9973.1	chr1	191199193	191199393	-	1	NA	NA	NA	-15960	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.010000	0.497512	
mm_115017.1	chr13	98355008	98355208	+	1	NA	NA	NA	863	NM_008242	15229	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	0.095000	0.606965	
mm_21517.1	chr2	163629099	163629299	-	1	NA	NA	NA	-15651	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.020000	0.507463	
mm_135239.1	chr16	36990136	36990336	-	1	NA	NA	NA	-11100	NM_001037321	207215	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0.045000	0.507463	
mm_167122.1	chr7	121589708	121589908	-	1	NA	NA	NA	28	NR_102286	75793	Mm.23397	NR_102286		4933432K03Rik	1700001C18Rik|4930433G11Rik|AI428127	RIKEN cDNA 4933432K03 gene	ncRNA	0.010000	0.467662	
mm_163633.1	chr13	58743907	58744107	+	1	NA	NA	NA	18304	NR_045469	67585	Mm.84751	NR_045469		4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	0.015000	0.462687	
mm_147808.1	chr18	61696995	61697195	-	1	NA	NA	NA	9160	NM_019508	56069	Mm.59313	NM_019508	ENSMUSG00000024578	Il17b	1110006O16Rik|1700006N07Rik|Zcyto7	interleukin 17B	protein-coding	0.015000	0.398010	-35(CCTCTTAGAGGC,+,0.00),-7(TTTTTTAAGGAG,+,0.00)
mm_7383.1	chr1	108440364	108440564	-	1	NA	NA	NA	523205	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	0.005000	0.293532	
mm_39303.1	chr5	7304019	7304219	+	1	NA	NA	NA	-45	NM_027603	70920	Mm.158494	NM_027603	ENSMUSG00000040514	4921511H03Rik	-	RIKEN cDNA 4921511H03 gene	protein-coding	0.000000	0.477612	
mm_86583.1	chr10	13008381	13008581	+	1	NA	NA	NA	31	NM_175102	66125	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0.115000	0.641791	
mm_123714.1	chr14	69824828	69825028	-	1	NA	NA	NA	-15479	NM_028560	73523	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0.015000	0.512438	
mm_166820.1	chr7	18065829	18066029	+	1	NA	NA	NA	0	NM_001162524	67315	Mm.46089	NM_026087	ENSMUSG00000030366	Ceacam12	1600031J20Rik|Ceacam12-C1|Ceacam12-C3|Ceacam12C1|Ceacam12C3	carcinoembryonic antigen-related cell adhesion molecule 12	protein-coding	0.000000	0.457711	
mm_80940.1	chr9	102717624	102717824	+	1	NA	NA	NA	-80	NM_019764	56332	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0.090000	0.676617	
mm_6378.1	chr1	72700437	72700637	-	1	NA	NA	NA	27	NM_176980	319695	Mm.249056	NM_176980	ENSMUSG00000039342	Ankar	4932422E22Rik	ankyrin and armadillo repeat containing	protein-coding	0.035000	0.522388	
mm_85528.1	chr9	106476046	106476246	-	1	NA	NA	NA	803	NM_001311150	235587	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	0.025000	0.547264	
mm_54759.1	chr6	41121741	41121941	-	1	NA	NA	NA	-86332	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.512438	
mm_41555.1	chr5	92962067	92962267	+	1	NA	NA	NA	64174	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.015000	0.547264	
mm_9827.1	chr1	182517458	182517658	-	1	NA	NA	NA	-75	NM_009794	12334	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.145000	0.771144	
mm_86389.1	chr9	123940111	123940311	-	1	NA	NA	NA	28481	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.005000	0.388060	
mm_43749.1	chr5	140419213	140419413	+	1	NA	NA	NA	8	NM_133916	27979	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	0.120000	0.696517	
mm_142035.1	chr17	35257996	35258196	-	1	NA	NA	NA	-4998	NM_010380	14964	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	0.015000	0.542289	
mm_29822.1	chr3	129531898	129532098	-	1	NA	NA	NA	-388	NM_130450	170439	Mm.314113	NM_130450	ENSMUSG00000041220	Elovl6	C77826|FAE|LCE	ELOVL family member 6, elongation of long chain fatty acids (yeast)	protein-coding	0.045000	0.527363	
mm_55575.1	chr6	71396111	71396311	-	1	NA	NA	NA	22784	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.000000	0.472637	
mm_105502.1	chr11	106160540	106160740	-	1	NA	NA	NA	-498	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.055000	0.616915	
mm_35584.1	chr4	41745007	41745207	-	1	NA	NA	NA	-3748	NM_001286551	18391	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0.005000	0.482587	
mm_140672.1	chr17	12960246	12960446	-	1	NA	NA	NA	379	NM_009338	110460	Mm.439711	NM_009338	ENSMUSG00000023832	Acat2	AW742799|Tcp-1x|Tcp1-rs1	acetyl-Coenzyme A acetyltransferase 2	protein-coding	0.060000	0.592040	
mm_157235.1	chrX	17251209	17251409	-	1	NA	NA	NA	68059	NM_028916	74405	Mm.248531	NM_028916	ENSMUSG00000025038	Efhc2	4933407D04Rik|mRib72-2	EF-hand domain (C-terminal) containing 2	protein-coding	0.025000	0.487562	
mm_73676.1	chr8	111536423	111536623	+	1	NA	NA	NA	-117	NM_001168622	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.180000	0.825871	
mm_4839.1	chr1	186709370	186709570	+	1	NA	NA	NA	-3481	NM_001329107	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.015000	0.447761	51(CTACATAAAAGC,-,0.00)
mm_79208.1	chr9	49002487	49002687	+	1	NA	NA	NA	17202	NM_175482	235323	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	0.015000	0.427861	
mm_2198.1	chr1	89455206	89455406	+	1	NA	NA	NA	495	NM_001037136	347722	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.105000	0.567164	
mm_79073.1	chr9	46241380	46241580	+	1	NA	NA	NA	636	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.015000	0.537313	
mm_7718.1	chr1	130661432	130661632	-	1	NA	NA	NA	86	NM_007576	12269	Mm.306720	NM_007576	ENSMUSG00000026405	C4bp	AI195242|C4bpa	complement component 4 binding protein	protein-coding	0.005000	0.447761	
mm_40455.1	chr5	53604027	53604227	+	1	NA	NA	NA	13641	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.000000	0.258706	-78(GTTTTTAAACTG,+,0.00)
mm_29270.1	chr3	107460175	107460375	-	1	NA	NA	NA	-1377	NM_145922	99738	Mm.101976	NM_145922	ENSMUSG00000027895	Kcnc4	AI850292|KSHIIIC|Kcr2-4|Kv3.4	potassium voltage gated channel, Shaw-related subfamily, member 4	protein-coding	0.120000	0.741294	
mm_7214.1	chr1	93160098	93160298	-	1	NA	NA	NA	672	NM_001159940	71874	Mm.158766	NM_172411	ENSMUSG00000034159	2310007B03Rik	-	RIKEN cDNA 2310007B03 gene	protein-coding	0.030000	0.641791	
mm_84291.1	chr9	63223055	63223255	-	1	NA	NA	NA	-74194	NM_001163758	207667	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.005000	0.422886	
mm_41651.1	chr5	98254148	98254348	+	1	NA	NA	NA	64	NM_001277268	14176	Mm.5055	NM_010203	ENSMUSG00000029337	Fgf5	Fgf-5|HBGF-5|angora|go	fibroblast growth factor 5	protein-coding	0.095000	0.661692	
mm_47577.1	chr5	124531251	124531451	-	1	NA	NA	NA	40	NM_021430	75695	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0.115000	0.751244	
mm_97597.1	chr11	78948966	78949166	+	1	NA	NA	NA	23775	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.045000	0.527363	
mm_168523.1	chr11	58267584	58267784	+	1	NA	NA	NA	-39385	NM_182996	103836	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	0.000000	0.402985	
mm_131380.1	chr16	14099941	14100141	+	1	NA	NA	NA	59233	NM_001081154	223989	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis arrest female 1	protein-coding	0.010000	0.572139	
mm_164240.1	chr15	93611682	93611882	+	1	NA	NA	NA	-15891	NM_001033217	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.005000	0.482587	
mm_75780.1	chr8	69996278	69996478	-	1	NA	NA	NA	6	NM_001286450	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.080000	0.666667	
mm_135400.1	chr16	44558792	44558992	-	1	NA	NA	NA	-22	NM_172506	117606	Mm.41561	NM_172506	ENSMUSG00000022687	Boc	4732455C11|mFLJ00376	biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein	protein-coding	0.040000	0.547264	-90(CCTTTTCAAGAC,+,0.00)
mm_132169.1	chr16	32277550	32277750	+	1	NA	NA	NA	189	NM_027355	70238	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	0.125000	0.736318	
mm_74764.1	chr8	20902372	20902572	-	1	NA	NA	NA	-499	NM_001177471	100504014	Mm.490239	NM_001177471	ENSMUSG00000082976	Gm15056	Defb52|OTTMUSG00000018888	predicted gene 15056	protein-coding	0.005000	0.447761	
mm_106218.1	chr11	117040091	117040291	-	1	NA	NA	NA	-36592	NR_027059	76972	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0.000000	0.522388	
mm_73651.1	chr8	110940840	110941040	+	1	NA	NA	NA	21075	NM_009179	20444	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	0.030000	0.497512	
mm_87215.1	chr10	39823842	39824042	+	1	NA	NA	NA	75296	NR_033628	213332	Mm.484359	NR_033628		Mfsd4b4	AA474331	major facilitator superfamily domain containing 4B4	pseudo	0.005000	0.373134	
mm_72899.1	chr8	90876361	90876561	+	1	NA	NA	NA	47626	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.020000	0.567164	
mm_140377.1	chr17	86997749	86997949	+	1	NA	NA	NA	27552	NM_008838	18701	Mm.219685	NM_008838	ENSMUSG00000024145	Pigf	-	phosphatidylinositol glycan anchor biosynthesis, class F	protein-coding	0.005000	0.343284	
mm_28528.1	chr3	92621143	92621343	-	1	NA	NA	NA	417	NM_001166172	78382	Mm.235474	NM_001166172	ENSMUSG00000086848	Lce6a	2210420J11Rik	late cornified envelope 6A	protein-coding	0.015000	0.437811	
mm_13784.1	chr2	118785994	118786194	+	1	NA	NA	NA	6375	NM_170593	214240	Mm.221499	NM_170593	ENSMUSG00000040035	Disp2	AI840597|B230210L08Rik|DispB|mKIAA1742	dispatched RND tramsporter family member 2	protein-coding	0.040000	0.592040	
mm_168068.1	chr10	105238266	105238466	+	1	NA	NA	NA	336113	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.060000	0.532338	20(AACTTTAAATGG,-,0.00)
mm_163625.1	chr13	56133247	56133447	+	1	NA	NA	NA	2203	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.015000	0.537313	
mm_58853.1	chr7	16876885	16877085	+	1	NA	NA	NA	1668	NM_001081655	629378	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	0.025000	0.631841	
mm_156678.1	chrX	159337869	159338069	+	1	NA	NA	NA	-34226	NM_025437	66235	Mm.294623	NM_025437	ENSMUSG00000067194	Eif1ax	1500010B24Rik|AI426898|Eif1ay	eukaryotic translation initiation factor 1A, X-linked	protein-coding	0.020000	0.402985	
mm_57679.1	chr6	128502104	128502304	-	1	NA	NA	NA	24516	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.030000	0.462687	
mm_159387.1	chr3	92250575	92250775	+	1	NA	NA	NA	28	NM_011468	20755	Mm.6853	NM_011468	ENSMUSG00000078664	Sprr2a1	Sprr2a|Sprr2a3	small proline-rich protein 2A1	protein-coding	0.005000	0.497512	25(TCCTATAAAAAA,-,0.00)
mm_103310.1	chr11	73094233	73094433	-	1	NA	NA	NA	3738	NM_008399	16407	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	0.015000	0.537313	
mm_88595.1	chr10	79777194	79777394	+	1	NA	NA	NA	20	NM_031380	83554	Mm.251710	NM_031380	ENSMUSG00000020325	Fstl3	E030038F23Rik|Flrg	follistatin-like 3	protein-coding	0.105000	0.721393	-52(GCTTTTATAGGC,+,0.00)
mm_82956.1	chr9	35570312	35570512	-	1	NA	NA	NA	-343	NM_029762	76832	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	hydrolethalus syndrome 1	protein-coding	0.095000	0.676617	
mm_41980.1	chr5	107497780	107497980	+	1	NA	NA	NA	101	NM_001168557	231570	Mm.261891	NM_001007574	ENSMUSG00000044060	A830010M20Rik	AI849226|Kiaa1107|mKIAA1107	RIKEN cDNA A830010M20 gene	protein-coding	0.015000	0.407960	
mm_39044.1	chr4	152448641	152448841	-	1	NA	NA	NA	114	NM_001252655	16498	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	0.025000	0.601990	
mm_83783.1	chr9	52164471	52164671	-	1	NA	NA	NA	3540	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.000000	0.422886	
mm_17776.1	chr2	32847153	32847353	-	1	NA	NA	NA	-16	NM_001113569	20910	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0.195000	0.800995	
mm_112307.1	chr12	114812702	114812902	-	1	NA	NA	NA	-299108	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.422886	
mm_45735.1	chr5	86373452	86373652	-	1	NA	NA	NA	-165	NM_145561	231382	Mm.240139	NM_145561	ENSMUSG00000061259	Tmprss11d	AST|AsP|BC020151	transmembrane protease, serine 11d	protein-coding	0.000000	0.383085	
mm_89531.1	chr10	94498973	94499173	+	1	NA	NA	NA	-15784	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.000000	0.402985	74(GGCTTTAAAAAA,-,0.00)
mm_8059.1	chr1	135375139	135375339	-	1	NA	NA	NA	-176	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.030000	0.646766	
mm_40900.1	chr5	75163700	75163900	+	1	NA	NA	NA	7634	NM_001083316	18595	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.035000	0.557214	
mm_25195.1	chr3	103771814	103772014	+	1	NA	NA	NA	19361	NM_001301306	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.020000	0.492537	
mm_140554.1	chr17	7765248	7765448	-	1	NA	NA	NA	39626	NM_001081416	68655	Mm.379161	NM_001081416	ENSMUSG00000071984	Fndc1	1110027O12Rik|1110051A18Rik|mKIAA1866	fibronectin type III domain containing 1	protein-coding	0.010000	0.537313	
mm_37212.1	chr4	117887185	117887385	-	1	NA	NA	NA	44	NM_033617	114143	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	0.120000	0.711443	
mm_27811.1	chr3	78594328	78594528	-	1	NA	NA	NA	550459	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.025000	0.467662	
mm_80605.1	chr9	86743165	86743365	+	1	NA	NA	NA	-368	NM_178738	244954	Mm.257629	NM_178738	ENSMUSG00000033491	Prss35	6030424L22Rik|P3D9	protease, serine 35	protein-coding	0.010000	0.517413	
mm_114056.1	chr13	54371272	54371472	+	1	NA	NA	NA	23	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.045000	0.616915	
mm_60294.1	chr7	44014740	44014940	+	1	NA	NA	NA	2143	NM_010115	13647	Mm.439663	NM_010115		Egfbp2	Egfbp-2|Klk1b26|mGk-13	epidermal growth factor binding protein type B	protein-coding	0.020000	0.547264	
mm_90505.1	chr10	128039315	128039515	+	1	NA	NA	NA	4069	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.015000	0.577114	
mm_27239.1	chr3	36521715	36521915	-	1	NA	NA	NA	-370	NR_040411	100503068	Mm.389423	NR_040411	ENSMUSG00000085007	Gm11549	OTTMUSG00000002111	predicted gene 11549	ncRNA	0.025000	0.502488	
mm_19507.1	chr2	93849707	93849907	-	1	NA	NA	NA	-8	NM_183220	329470	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	0.085000	0.626866	
mm_60597.1	chr7	44497148	44497348	+	1	NA	NA	NA	660	NM_028169	75538	Mm.258841	NM_028169	ENSMUSG00000051113	Fam71e1	0610007G24Rik|1700021N13Rik|1700021P22Rik|GARI-L5	family with sequence similarity 71, member E1	protein-coding	0.010000	0.437811	-4(CTTTTTAGAGGT,+,0.00)
mm_59510.1	chr7	27575639	27575839	+	1	NA	NA	NA	15263	NM_001122767	66367	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	0.005000	0.363184	85(TCCTTTAAAAGT,-,0.00),86(CCTTTAAAAGTT,+,0.00)
mm_76397.1	chr8	84844514	84844714	-	1	NA	NA	NA	2317	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.015000	0.537313	
mm_151023.1	chr19	46863813	46864013	+	1	NA	NA	NA	98438	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.005000	0.422886	-37(GCCTCTTTAAGA,-,0.00)
mm_30645.1	chr4	8837641	8837841	+	1	NA	NA	NA	147335	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.015000	0.532338	
mm_17975.1	chr2	37661062	37661262	-	1	NA	NA	NA	-13877	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding	0.000000	0.358209	
mm_114342.1	chr13	60762420	60762620	+	1	NA	NA	NA	23844	NM_199148	218275	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.015000	0.477612	47(CTTTTTCTAGGG,+,0.00)
mm_73455.1	chr8	106503977	106504177	+	1	NA	NA	NA	-6775	NM_007665	12560	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0.005000	0.417910	
mm_52188.1	chr6	99665773	99665973	+	1	NA	NA	NA	898	NM_025829	66892	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.015000	0.383085	
mm_45988.1	chr5	90498204	90498404	-	1	NA	NA	NA	7590	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.015000	0.398010	
mm_54600.1	chr6	38306589	38306789	-	1	NA	NA	NA	-7430	NM_172467	209032	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	0.030000	0.388060	
mm_40124.1	chr5	34989608	34989808	+	1	NA	NA	NA	-9370	NM_001163512	71729	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.035000	0.497512	
mm_67769.1	chr7	95193700	95193900	-	1	NA	NA	NA	-977444	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.000000	0.313433	
mm_132397.1	chr16	35001019	35001219	+	1	NA	NA	NA	-21302	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.020000	0.512438	
mm_69788.1	chr7	141096640	141096840	-	1	NA	NA	NA	3806	NM_023059	24058	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0.005000	0.517413	
mm_92533.1	chr10	79586989	79587189	-	1	NA	NA	NA	47	NM_199226	21830	Mm.89197	NM_011583	ENSMUSG00000020317	Theg	-	testicular haploid expressed gene	protein-coding	0.015000	0.547264	
mm_95287.1	chr11	45979219	45979419	+	1	NA	NA	NA	-991	NM_173384	214105	Mm.66708	NM_173384	ENSMUSG00000040489	Sox30	-	SRY (sex determining region Y)-box 30	protein-coding	0.025000	0.402985	-71(GTGCATAAAAGA,-,0.00)
mm_166984.1	chr7	45699819	45700019	+	1	NA	NA	NA	-48	NM_009800	12348	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	0.060000	0.621891	
mm_154169.1	chr19	58729909	58730109	-	1	NA	NA	NA	1122	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.005000	0.542289	
mm_5295.1	chr1	21256101	21256301	-	1	NA	NA	NA	15616	NM_010356	14859	Mm.394593	NM_010356	ENSMUSG00000025934	Gsta3	Gst2-3	glutathione S-transferase, alpha 3	protein-coding	0.000000	0.452736	
mm_9257.1	chr1	171601925	171602125	-	1	NA	NA	NA	5309	NR_102726	17085	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	0.020000	0.502488	
mm_124079.1	chr14	78644330	78644530	-	1	NA	NA	NA	21	NR_104044	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.015000	0.467662	
mm_28919.1	chr3	98857876	98858076	-	1	NA	NA	NA	1818	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.000000	0.477612	
mm_115669.1	chr13	12519976	12520176	-	1	NA	NA	NA	374	NM_133643	171211	Mm.159671	NM_133643	ENSMUSG00000095105	Edaradd	1810032E07Rik|5830469M23Rik|A630043P06|cr	EDAR (ectodysplasin-A receptor)-associated death domain	protein-coding	0.045000	0.601990	
mm_84437.1	chr9	66094011	66094211	-	1	NA	NA	NA	-24380	NM_001025612	382083	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	0.025000	0.512438	81(TCCTTTATAGTG,+,0.00)
mm_78266.1	chr9	21955685	21955885	+	1	NA	NA	NA	32	NM_025870	66962	Mm.46647	NM_025870	ENSMUSG00000051238	Swsap1	2310047B19Rik	SWIM type zinc finger 7 associated protein 1	protein-coding	0.095000	0.646766	
mm_62953.1	chr7	119606922	119607122	+	1	NA	NA	NA	-10806	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.010000	0.497512	
mm_19179.1	chr2	84389660	84389860	-	1	NA	NA	NA	35506	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.000000	0.388060	
mm_138820.1	chr17	39847504	39847704	+	1	NA	NA	NA	4607	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.050000	0.537313	
mm_92292.1	chr10	71980600	71980800	-	1	NA	NA	NA	-10	NR_003644	108950	Mm.212793	NM_175390	ENSMUSG00000043859	1700049L16Rik	-	hematological and neurological expressed 1-like pseudogene	pseudo	0.035000	0.532338	
mm_42967.1	chr5	123136556	123136756	+	1	NA	NA	NA	-4027	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.020000	0.597015	
mm_66544.1	chr7	45189702	45189902	-	1	NA	NA	NA	8807	NM_053256	114640	Mm.207078	NM_053256	ENSMUSG00000038300	Pth2	Tifp39|Tip39	parathyroid hormone 2	protein-coding	0.025000	0.611940	
mm_149183.1	chr19	9899581	9899781	+	1	NA	NA	NA	-148	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.070000	0.562189	
mm_134583.1	chr16	20412698	20412898	-	1	NA	NA	NA	13596	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.020000	0.422886	-32(CTATATTAAAGG,-,0.00)
mm_69328.1	chr7	128739535	128739735	-	1	NA	NA	NA	794	NM_145955	210711	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0.025000	0.432836	
mm_60669.1	chr7	45017845	45018045	+	1	NA	NA	NA	-62	NM_009101	20130	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.060000	0.606965	
mm_76960.1	chr8	106107129	106107329	-	1	NA	NA	NA	-28171	NR_040345	69771	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.000000	0.383085	
mm_11015.1	chr2	26586536	26586736	+	1	NA	NA	NA	6	NM_001164564	353156	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0.140000	0.800995	
mm_19527.1	chr2	94253411	94253611	-	1	NA	NA	NA	7888	NR_030431	735259		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.000000	0.378109	
mm_139401.1	chr17	52309802	52310002	+	1	NA	NA	NA	-292807	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.005000	0.427861	26(GACTATAAGAGC,-,0.00)
mm_143358.1	chr17	67298881	67299081	-	1	NA	NA	NA	55478	NM_008984	19274	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.010000	0.338308	
mm_14580.1	chr2	135659599	135659799	+	1	NA	NA	NA	-76479	NR_015544	320684	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.125000	0.706468	
mm_136416.1	chr16	93929370	93929570	-	1	NA	NA	NA	97	NM_001165925	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.030000	0.532338	
mm_85709.1	chr9	108161385	108161585	-	1	NA	NA	NA	24630	NR_126077	76873	Mm.436935	NR_126077	ENSMUSG00000102224	4930447F24Rik	-	RIKEN cDNA 4930447F24 gene	ncRNA	0.010000	0.378109	
mm_147594.1	chr18	56677719	56677919	-	1	NA	NA	NA	-29994	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.005000	0.452736	
mm_47932.1	chr5	135078194	135078394	-	1	NA	NA	NA	-28	NM_001199677	194309	Mm.44356	NM_177574	ENSMUSG00000043614	Vps37d	Wbscr24	vacuolar protein sorting 37D	protein-coding	0.145000	0.791045	-83(GCCCCTTTAAGA,-,0.00),-81(CCCTTTAAGAGC,+,0.00),-81(CCCTTTAAGAGC,-,0.00),-80(CCTTTAAGAGCG,+,0.00)
mm_167869.1	chrX	33416428	33416628	-	1	NA	NA	NA	103190	NM_001099333	100040606	Mm.460713	NM_001099333	ENSMUSG00000101500	Btbd35f12	Gm2863	BTB domain containing 35, family member 12	protein-coding	0.030000	0.472637	
mm_6296.1	chr1	71048018	71048218	-	1	NA	NA	NA	54854	NM_007525	12021	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	ENSMUSG00000060893|ENSMUSG00000073653	BRCA1 associated RING domain 1	protein-coding	0.000000	0.268657	-53(GCTTAAATAGAT,+,0.00)
mm_146081.1	chr18	70622508	70622708	+	1	NA	NA	NA	54316	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.035000	0.477612	
mm_1189.1	chr1	62703242	62703442	+	1	NA	NA	NA	25	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.100000	0.691542	14(GGCCTGAAAAGG,-,0.00)
mm_122648.1	chr14	51908279	51908479	-	1	NA	NA	NA	5109	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.025000	0.472637	
mm_52896.1	chr6	122635491	122635691	+	1	NA	NA	NA	9167	NM_139218	73708	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.020000	0.467662	
mm_162137.1	chrX	73673336	73673536	+	1	NA	NA	NA	303	NM_001142809	102857	Mm.274553	NM_133987	ENSMUSG00000019558	Slc6a8	AA589632|CRT|CRTR|CT1|CTR5|Creat	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	protein-coding	0.150000	0.800995	
mm_113036.1	chr13	23544367	23544567	+	1	NA	NA	NA	415	NM_013548	260423	Mm.221389	NM_013548	ENSMUSG00000100210	Hist1h3f	H3.2-221|Hist1	histone cluster 1, H3f	protein-coding	0.045000	0.502488	-36(TTCTATAAAAGG,-,0.00)
mm_94171.1	chr10	128804363	128804563	-	1	NA	NA	NA	-93	NM_178066	73827	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	0.020000	0.597015	
mm_135751.1	chr16	55940634	55940834	-	1	NA	NA	NA	-5886	NM_001159365	74201	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	0.025000	0.487562	
mm_54960.1	chr6	48708089	48708289	-	1	NA	NA	NA	55	NM_153175	231931	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	0.025000	0.417910	
mm_23850.1	chr3	83008399	83008599	+	1	NA	NA	NA	775	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.035000	0.497512	
mm_138038.1	chr17	33919770	33919970	+	1	NA	NA	NA	392	NM_009318	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.085000	0.676617	
mm_89291.1	chr10	87903879	87904079	+	1	NA	NA	NA	42868	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.005000	0.353234	-71(GTCCCTTAATGG,-,0.00),-69(CCCTTAATGGAG,+,0.00)
mm_122967.1	chr14	54973944	54974144	-	1	NA	NA	NA	1732	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.020000	0.537313	-92(GTTTTTAGACAC,+,0.00)
mm_101353.1	chr11	23739773	23739973	-	1	NA	NA	NA	31097	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.005000	0.378109	
mm_6476.1	chr1	74069784	74069984	-	1	NA	NA	NA	54563	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.015000	0.557214	
mm_87109.1	chr10	33197623	33197823	+	1	NA	NA	NA	58634	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.000000	0.328358	-68(CACCCTTTAAGG,-,0.00),-66(CCCTTTAAGGAA,+,0.00)
mm_31003.1	chr4	40181887	40182087	+	1	NA	NA	NA	38722	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.015000	0.507463	
mm_2772.1	chr1	130731947	130732147	+	1	NA	NA	NA	71	NM_177604	212439	Mm.268547	NM_177604	ENSMUSG00000042510	AA986860	E030025M07|Sarg	expressed sequence AA986860	protein-coding	0.015000	0.542289	
mm_65194.1	chr7	19696661	19696861	-	1	NA	NA	NA	1637	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.105000	0.696517	
mm_99255.1	chr11	101155803	101156003	+	1	NA	NA	NA	19	NM_134028	103768	Mm.142348	NM_134028	ENSMUSG00000045007	Tubg2	AI504772|Tubgl	tubulin, gamma 2	protein-coding	0.080000	0.646766	
mm_160729.1	chr10	76469205	76469405	-	1	NA	NA	NA	-191	NM_172550	216119	Mm.344778	NM_172550	ENSMUSG00000033126	Ybey	1110068N23Rik|A130042E20Rik|C21orf57|ORF57|ORF66	ybeY metallopeptidase	protein-coding	0.020000	0.318408	
mm_122715.1	chr14	52257705	52257905	-	1	NA	NA	NA	-20233	NM_201637	67772	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	0.080000	0.686567	
mm_163798.1	chr14	17847320	17847520	+	1	NA	NA	NA	-134224	NM_009380	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.035000	0.606965	
mm_14258.1	chr2	128190345	128190545	+	1	NA	NA	NA	62870	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.015000	0.522388	
mm_73123.1	chr8	94780385	94780585	+	1	NA	NA	NA	8305	NM_009142	20312	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	0.030000	0.592040	
mm_93974.1	chr10	127323513	127323713	-	1	NA	NA	NA	-114	NM_146011	216445	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.025000	0.532338	
mm_23160.1	chr3	40531594	40531794	+	1	NA	NA	NA	-8782	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.080000	0.676617	
mm_152969.1	chr19	29385322	29385522	-	1	NA	NA	NA	17984	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.025000	0.472637	
mm_69481.1	chr7	133776656	133776856	-	1	NA	NA	NA	47	NM_001286032	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.150000	0.741294	
mm_120756.1	chr14	73362938	73363138	+	1	NA	NA	NA	22233	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.015000	0.402985	
mm_71756.1	chr8	65966586	65966786	+	1	NA	NA	NA	348161	NM_175188	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.010000	0.472637	71(TGCCATTAAAAG,-,0.00),73(CCATTAAAAGGA,+,0.00)
mm_95081.1	chr11	32744827	32745027	+	1	NA	NA	NA	79667	NM_027050	69351	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	0.055000	0.522388	
mm_9918.1	chr1	189343250	189343450	-	1	NA	NA	NA	3	NM_001159850	16526	Mm.33304	NM_010607	ENSMUSG00000037624	Kcnk2	A430027H14Rik|AI848635|TREK-1	potassium channel, subfamily K, member 2	protein-coding	0.065000	0.527363	
mm_115813.1	chr13	19697652	19697852	-	1	NA	NA	NA	8	NM_001167909	73412	Mm.279939	NM_181591	ENSMUSG00000041138	Nme8	1700056P15Rik|Sptrx-2|Txndc3	NME/NM23 family member 8	protein-coding	0.030000	0.631841	
mm_10009.1	chr1	191791303	191791503	-	1	NA	NA	NA	-30070	NM_010892	18005	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0.015000	0.447761	
mm_35278.1	chr4	19923424	19923624	-	1	NA	NA	NA	-958	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.015000	0.467662	
mm_28766.1	chr3	95892772	95892972	-	1	NA	NA	NA	-867	NM_153513	229600	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	0.005000	0.567164	
mm_102476.1	chr11	60036855	60037055	-	1	NA	NA	NA	50	NM_008819	18618	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	0.005000	0.527363	
mm_70258.1	chr8	3515538	3515738	+	1	NA	NA	NA	254	NM_015801	50767	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0.045000	0.482587	
mm_92821.1	chr10	81461257	81461457	-	1	NA	NA	NA	11774	NM_001311127	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.015000	0.407960	
mm_74913.1	chr8	25306110	25306310	-	1	NA	NA	NA	60	NR_040352	74489	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0.035000	0.537313	
mm_59576.1	chr7	28117336	28117536	+	1	NA	NA	NA	-12030	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.542289	
mm_139595.1	chr17	57233117	57233317	+	1	NA	NA	NA	-5081	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.030000	0.597015	
mm_77615.1	chr8	123895657	123895857	-	1	NA	NA	NA	-982	NM_009606	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.015000	0.547264	
mm_19150.1	chr2	80580908	80581108	-	1	NA	NA	NA	174	NM_001290745	50884	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0.160000	0.786070	
mm_79190.1	chr9	48450190	48450390	+	1	NA	NA	NA	-4054	NR_026561	667933	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.070000	0.547264	
mm_43077.1	chr5	124446851	124447051	+	1	NA	NA	NA	247	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.010000	0.527363	-28(TTCCTTAAATGG,-,0.00),-26(CCTTAAATGGAC,+,0.00),-7(TCCTTTAAGGTC,+,0.00)
mm_15137.1	chr2	153974606	153974806	+	1	NA	NA	NA	-239	NM_001080811	545477	Mm.379973	NM_001080811	ENSMUSG00000078998	Bpifa6	EG545477|Gm5840|Splunc6	BPI fold containing family A, member 6	protein-coding	0.015000	0.522388	
mm_160825.1	chr11	35798590	35798790	-	1	NA	NA	NA	194	NM_001004147	237730	Mm.189222	NM_001004147	ENSMUSG00000051062	Fbll1	AI595406	fibrillarin-like 1	protein-coding	0.055000	0.577114	
mm_100995.1	chr11	8455180	8455380	-	1	NA	NA	NA	209255	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.000000	0.378109	
mm_77656.1	chr8	124569756	124569956	-	1	NA	NA	NA	-149	NM_007428	11606	Mm.301626	NM_007428	ENSMUSG00000031980	Agt	AI265500|AngI|AngII|Aogen|Serpina8	angiotensinogen (serpin peptidase inhibitor, clade A, member 8)	protein-coding	0.000000	0.562189	
mm_1588.1	chr1	74304191	74304391	+	1	NA	NA	NA	45	NM_027154	69660	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.070000	0.626866	
mm_129094.1	chr15	75929609	75929809	-	1	NA	NA	NA	21	NM_031201	22122	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	0.070000	0.606965	
mm_110100.1	chr12	25319888	25320088	-	1	NA	NA	NA	190814	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.005000	0.467662	
mm_41428.1	chr5	90892630	90892830	+	1	NA	NA	NA	1485	NM_008176	14825	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.010000	0.348259	
mm_24173.1	chr3	88575665	88575865	+	1	NA	NA	NA	-3906	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.005000	0.437811	
mm_113466.1	chr13	36120759	36120959	+	1	NA	NA	NA	3216	NM_001039189	69955	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.000000	0.303483	
mm_128663.1	chr15	60141625	60141825	-	1	NA	NA	NA	-125107	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.010000	0.472637	
mm_127351.1	chr15	100619645	100619845	+	1	NA	NA	NA	4083	NM_011873	23994	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0.000000	0.417910	
mm_73946.1	chr8	120114060	120114260	+	1	NA	NA	NA	8	NM_001163761	234797	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.150000	0.766169	
mm_4840.1	chr1	186749292	186749492	+	1	NA	NA	NA	-34	NM_026041	67223	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	0.085000	0.616915	
mm_147854.1	chr18	63692289	63692489	-	1	NA	NA	NA	-30	NM_016792	53382	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.125000	0.721393	
mm_74313.1	chr8	126594806	126595006	+	1	NA	NA	NA	-1470	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.080000	0.631841	
mm_117089.1	chr13	59769434	59769634	-	1	NA	NA	NA	255	NM_026921	69046	Mm.7884	NM_026921	ENSMUSG00000044792	Isca1	1810010A06Rik|Hbld2	iron-sulfur cluster assembly 1	protein-coding	0.150000	0.771144	
mm_63655.1	chr7	128919374	128919574	+	1	NA	NA	NA	174604	NM_001029982	207352	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	0.015000	0.482587	
mm_127800.1	chr15	3986734	3986934	-	1	NA	NA	NA	-7261	NM_134099	106052	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	0.005000	0.283582	
mm_92513.1	chr10	78439604	78439804	-	1	NA	NA	NA	4905	NR_105837	102465221		NR_105837	ENSMUSG00000098932	Mir6410	Gm27916|mmu-mir-6410	microRNA 6410	ncRNA	0.005000	0.611940	
mm_66405.1	chr7	44477379	44477579	-	1	NA	NA	NA	-7038	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.388060	
mm_110863.1	chr12	73546251	73546451	-	1	NA	NA	NA	44	NM_178715	238257	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	0.125000	0.761194	
mm_97408.1	chr11	77953337	77953537	+	1	NA	NA	NA	22598	NM_021286	20370	Mm.229330	NM_021286	ENSMUSG00000000632	Sez6	BSRP-C|D11Bhm177e|sez-6	seizure related gene 6	protein-coding	0.050000	0.606965	
mm_66844.1	chr7	49134178	49134378	-	1	NA	NA	NA	-111911	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.005000	0.522388	
mm_34725.1	chr4	152177940	152178140	+	1	NA	NA	NA	-60	NM_133348	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.155000	0.776119	
mm_151230.1	chr19	53739142	53739342	+	1	NA	NA	NA	61936	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.010000	0.288557	
mm_57872.1	chr6	129740384	129740584	-	1	NA	NA	NA	0	NM_177155	320407	Mm.123265	NM_177155	ENSMUSG00000043932	Klri2	A530090P03Rik	killer cell lectin-like receptor family I member 2	protein-coding	0.000000	0.383085	
mm_166862.1	chr7	24457583	24457783	-	1	NA	NA	NA	-4800	NM_011113	18793	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.025000	0.542289	
mm_130180.1	chr15	93398249	93398449	-	1	NA	NA	NA	-1	NM_001083114	223828	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.175000	0.761194	-18(CGCCCTAAAGGC,-,0.00)
mm_60898.1	chr7	46426656	46426856	+	1	NA	NA	NA	30288	NM_001112739	16502	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.025000	0.626866	
mm_33908.1	chr4	136310923	136311123	+	1	NA	NA	NA	81	NM_001277123	74326	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	0.110000	0.716418	
mm_75949.1	chr8	71592387	71592587	-	1	NA	NA	NA	303	NM_001294269	66171	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	0.155000	0.746269	
mm_43368.1	chr5	135416488	135416688	+	1	NA	NA	NA	-22042	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.015000	0.412935	-7(TTTTTTAAAAGG,-,0.00)
mm_152852.1	chr19	24142781	24142981	-	1	NA	NA	NA	31259	NM_001198985	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.025000	0.547264	
mm_167038.1	chr7	78895912	78896112	+	1	NA	NA	NA	85	NM_001162939	68048	Mm.34109	NM_026531	ENSMUSG00000030609	Aen	2700083B06Rik|Isg20l1	apoptosis enhancing nuclease	protein-coding	0.090000	0.661692	
mm_132086.1	chr16	30599626	30599826	+	1	NA	NA	NA	3	NM_177632	224093	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.115000	0.651741	-96(AGCCCTAAAGGG,-,0.00)
mm_68363.1	chr7	106529080	106529280	-	1	NA	NA	NA	-88107	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.005000	0.507463	-13(CCTCATAGAGCC,+,0.00)
mm_39714.1	chr5	27994371	27994571	+	1	NA	NA	NA	-76941	NM_153526	231070	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.000000	0.313433	
mm_154644.1	chrX	7789895	7790095	+	1	NA	NA	NA	2	NM_207670	54645	Mm.194811	NM_207670	ENSMUSG00000031153	Gripap1	AI854681|DXImx47e|GRASP-1|Sfc10|mKIAA1167	GRIP1 associated protein 1	protein-coding	0.045000	0.557214	
mm_130559.1	chr15	99251819	99252019	-	1	NA	NA	NA	42	NM_001164156	51812	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	0.090000	0.606965	
mm_41074.1	chr5	87669420	87669620	+	1	NA	NA	NA	3312	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.010000	0.343284	
mm_102789.1	chr11	68445907	68446107	-	1	NA	NA	NA	13882	NM_177320	320207	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik	phosphoinositide-3-kinase, regulatory subunit 5, p101	protein-coding	0.010000	0.467662	-35(CTGCTTTAAAGG,-,0.00),-34(TGCTTTAAAGGC,-,0.00),-33(GCTTTAAAGGCT,+,0.00),72(GCTTATATAGTG,+,0.00)
mm_28301.1	chr3	89213808	89214008	-	1	NA	NA	NA	427	NM_001161824	17827	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	0.080000	0.681592	
mm_8686.1	chr1	156939933	156940133	-	1	NA	NA	NA	-407	NM_023884	78255	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0.045000	0.557214	
mm_69677.1	chr7	139985308	139985508	-	1	NA	NA	NA	1466	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.005000	0.587065	
mm_119590.1	chr14	50944429	50944629	+	1	NA	NA	NA	226	NM_013632	18950	Mm.17932	NM_013632	ENSMUSG00000021871	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	0.080000	0.626866	-56(GGATATAAAGGC,-,0.00)
mm_121530.1	chr14	122279920	122280120	+	1	NA	NA	NA	-46382	NR_015532	68245	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.000000	0.323383	
mm_151424.1	chr19	56826409	56826609	+	1	NA	NA	NA	223	NM_031387	83561	Mm.247541	NM_031387	ENSMUSG00000025081	Tdrd1	MTR-1	tudor domain containing 1	protein-coding	0.075000	0.651741	
mm_1665.1	chr1	74771677	74771877	+	1	NA	NA	NA	-115	NM_009526	22420	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	0.125000	0.815920	
mm_147826.1	chr18	61930163	61930363	-	1	NA	NA	NA	-18411	NM_001164491	319713	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	0.015000	0.537313	
mm_87385.1	chr10	45066939	45067139	+	1	NA	NA	NA	-175	NM_011156	19072	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.160000	0.761194	
mm_121797.1	chr14	20112470	20112670	-	1	NA	NA	NA	-29398	NM_026209	67509	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0.000000	0.358209	
mm_60400.1	chr7	44475598	44475798	+	1	NA	NA	NA	5351	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.552239	
mm_64788.1	chr7	6156083	6156283	-	1	NA	NA	NA	-212	NM_001013012	67109	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.110000	0.686567	
mm_90887.1	chr10	10234733	10234933	-	1	NA	NA	NA	237481	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.020000	0.487562	
mm_77362.1	chr8	119778306	119778506	-	1	NA	NA	NA	10	NM_028883	74347	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.065000	0.646766	
mm_721.1	chr1	42699572	42699772	+	1	NA	NA	NA	-664	NR_027891	73100	Mm.467885	NR_027891		2900092D14Rik	-	RIKEN cDNA 2900092D14 gene	ncRNA	0.045000	0.527363	70(TCCGATAAAAGG,-,0.00)
mm_27807.1	chr3	75956824	75957024	-	1	NA	NA	NA	25	NM_175193	73124	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.065000	0.656716	
mm_115378.1	chr13	113093888	113094088	+	1	NA	NA	NA	6993	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.015000	0.462687	
mm_63770.1	chr7	131334447	131334647	+	1	NA	NA	NA	-75	NM_183272	68223	Mm.233827	NM_183272	ENSMUSG00000030859	Fam24a	1700063I17Rik	family with sequence similarity 24, member A	protein-coding	0.005000	0.497512	
mm_8682.1	chr1	156938732	156938932	-	1	NA	NA	NA	555	NM_001159966	78255	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0.045000	0.542289	
mm_3236.1	chr1	135850624	135850824	+	1	NA	NA	NA	9863	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.020000	0.577114	
mm_127759.1	chr15	103514242	103514442	+	1	NA	NA	NA	-635	NM_001285890	18574	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.020000	0.522388	
mm_14098.1	chr2	125229457	125229657	+	1	NA	NA	NA	-17691	NM_001159646	110074	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0.000000	0.358209	
mm_141988.1	chr17	35165290	35165490	-	1	NA	NA	NA	-513	NM_020027	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.045000	0.482587	
mm_2970.1	chr1	133053214	133053414	+	1	NA	NA	NA	7302	NM_001099276	240752	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphoinositide-3-kinase, class 2, beta polypeptide	protein-coding	0.025000	0.497512	
mm_130394.1	chr15	97963956	97964156	-	1	NA	NA	NA	-173	NM_201359	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.080000	0.616915	
mm_78737.1	chr9	41586399	41586599	+	1	NA	NA	NA	4573	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA	0.025000	0.432836	
mm_109598.1	chr12	112678690	112678890	+	1	NA	NA	NA	-50	NM_001100460	382639	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0.155000	0.781095	
mm_39655.1	chr5	24750808	24751008	+	1	NA	NA	NA	6935	NM_153076	214301	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0.070000	0.696517	
mm_169783.1	chr16	11144169	11144369	+	1	NA	NA	NA	-9737	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.095000	0.567164	
mm_95814.1	chr11	55131580	55131780	+	1	NA	NA	NA	20026	NM_172258	215332	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0.015000	0.422886	50(TCTTTTAAAAAC,+,0.00)
mm_63353.1	chr7	126976462	126976662	+	1	NA	NA	NA	648	NM_001347656	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.070000	0.691542	
mm_148587.1	chr19	5067993	5068193	+	1	NA	NA	NA	15	NM_054042	70445	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.095000	0.766169	
mm_82427.1	chr9	14903895	14904095	-	1	NA	NA	NA	-44	NM_022888	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.010000	0.512438	
mm_81060.1	chr9	106165903	106166103	+	1	NA	NA	NA	-4926	NM_029896	77305	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	0.015000	0.502488	
mm_48749.1	chr5	147894735	147894935	-	1	NA	NA	NA	-33	NM_027872	71706	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	0.095000	0.651741	
mm_76490.1	chr8	85840657	85840857	-	1	NA	NA	NA	192	NM_028007	71927	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	0.130000	0.741294	
mm_102286.1	chr11	55401889	55402089	-	1	NA	NA	NA	18091	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.010000	0.562189	
mm_87323.1	chr10	42860644	42860844	+	1	NA	NA	NA	232	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.035000	0.567164	
mm_152788.1	chr19	21461205	21461405	-	1	NA	NA	NA	11356	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.000000	0.388060	-32(CTTTATATACAG,+,0.00),29(CCTTTTATGTAG,+,0.00)
mm_134869.1	chr16	28683495	28683695	-	1	NA	NA	NA	69648	NM_010199	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.010000	0.373134	
mm_69546.1	chr7	135695803	135696003	-	1	NA	NA	NA	20476	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.020000	0.437811	
mm_118969.1	chr14	27875985	27876185	+	1	NA	NA	NA	253678	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	0.040000	0.457711	
mm_130448.1	chr15	98533841	98534041	-	1	NA	NA	NA	328	NM_001289438	69612	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	0.145000	0.781095	
mm_82523.1	chr9	20643080	20643280	-	1	NA	NA	NA	-138	NM_025401	66177	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.040000	0.582090	
mm_93682.1	chr10	117814817	117815017	-	1	NA	NA	NA	-22212	NM_134010	103468	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.015000	0.407960	
mm_94884.1	chr11	26411997	26412197	+	1	NA	NA	NA	25013	NR_102382	67030	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	0.010000	0.432836	
mm_152474.1	chr19	11017823	11018023	-	1	NA	NA	NA	40	NM_001251849	76002	Mm.139320	NM_001251849	ENSMUSG00000094584	Ms4a18	5033428B15Rik	membrane-spanning 4-domains, subfamily A, member 18	protein-coding	0.005000	0.457711	
mm_135773.1	chr16	56831750	56831950	-	1	NA	NA	NA	-35992	NM_172825	239853	Mm.258979	NM_172825	ENSMUSG00000022755	Adgrg7	9130020O16Rik|Gpr128	adhesion G protein-coupled receptor G7	protein-coding	0.025000	0.482587	
mm_83534.1	chr9	46233011	46233211	-	1	NA	NA	NA	2188	NM_001289833	11814	Mm.390161	NM_023114	ENSMUSG00000032081	Apoc3	apo-CIII|apoC-III	apolipoprotein C-III	protein-coding	0.005000	0.547264	-34(GCTTTAAGGGGA,+,0.00)
mm_168835.1	chr12	23010163	23010363	-	1	NA	NA	NA	-20	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA	0.120000	0.751244	
mm_51897.1	chr6	90619148	90619348	+	1	NA	NA	NA	2	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.020000	0.592040	
mm_140629.1	chr17	12420354	12420554	-	1	NA	NA	NA	41845	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.005000	0.338308	
mm_790.1	chr1	45337204	45337404	+	1	NA	NA	NA	25766	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.010000	0.477612	
mm_32029.1	chr4	95215372	95215572	+	1	NA	NA	NA	-163250	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.010000	0.442786	
mm_65658.1	chr7	28139675	28139875	-	1	NA	NA	NA	10309	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.035000	0.636816	
mm_72472.1	chr8	83566670	83566870	+	1	NA	NA	NA	12	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.060000	0.631841	
mm_49988.1	chr6	41046786	41046986	+	1	NA	NA	NA	-11377	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.472637	
mm_24197.1	chr3	88611863	88612063	+	1	NA	NA	NA	-4244	NM_001198911	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.432836	
mm_162984.1	chr11	21370909	21371109	+	1	NA	NA	NA	258	NM_001290634	216558	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0.095000	0.696517	
mm_144653.1	chr18	34221014	34221214	+	1	NA	NA	NA	130	NM_007462	11789	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	0.135000	0.736318	
mm_71333.1	chr8	45186627	45186827	+	1	NA	NA	NA	-21582	NR_040690	622523	Mm.390032	NR_040690	ENSMUSG00000110231	Gm6329	EG622523	predicted gene 6329	ncRNA	0.015000	0.472637	
mm_36737.1	chr4	99655888	99656088	-	1	NA	NA	NA	-311	NM_010425	15221	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	0.085000	0.646766	
mm_28297.1	chr3	89101838	89102038	-	1	NA	NA	NA	29	NM_134469	110196	Mm.39472	NM_134469	ENSMUSG00000059743	Fdps	6030492I17Rik|AI256750|Fdpsl1|mKIAA1293	farnesyl diphosphate synthetase	protein-coding	0.050000	0.537313	
mm_161046.1	chr12	38084027	38084227	+	1	NA	NA	NA	203422	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	0.005000	0.303483	-12(CTATATAAATGG,-,0.00)
mm_60589.1	chr7	44482816	44483016	+	1	NA	NA	NA	-1601	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.477612	
mm_29221.1	chr3	107211303	107211503	-	1	NA	NA	NA	10329	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.502488	
mm_14378.1	chr2	129630562	129630762	+	1	NA	NA	NA	37493	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.005000	0.577114	
mm_73027.1	chr8	94153803	94154003	+	1	NA	NA	NA	1296	NM_013603	17751	Mm.2064	NM_013603	ENSMUSG00000031760	Mt3	Mt-3	metallothionein 3	protein-coding	0.030000	0.567164	
mm_45844.1	chr5	87697955	87698155	-	1	NA	NA	NA	1370	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.437811	
mm_144833.1	chr18	36390824	36391024	+	1	NA	NA	NA	42300	NM_001081365	66060	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.005000	0.497512	
mm_101463.1	chr11	30471706	30471906	-	1	NA	NA	NA	23	NM_001100394	75087	Mm.159422	NM_001100394	ENSMUSG00000040919	4930505A04Rik	-	RIKEN cDNA 4930505A04 gene	protein-coding	0.020000	0.547264	
mm_111203.1	chr12	84236380	84236580	-	1	NA	NA	NA	-17599	NM_001163501	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.020000	0.537313	
mm_6825.1	chr1	84200314	84200514	-	1	NA	NA	NA	18547	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.333333	48(TCCTCTAAAAGG,-,0.00)
mm_57020.1	chr6	121473555	121473755	-	1	NA	NA	NA	23	NM_001033354	243621	Mm.299442	NM_001033354	ENSMUSG00000040797	Iqsec3	AK122446|BRAG3|mKIAA1110|synarfGEF	IQ motif and Sec7 domain 3	protein-coding	0.125000	0.766169	
mm_44585.1	chr5	24908472	24908672	-	1	NA	NA	NA	-63	NM_001170555	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.160000	0.800995	
mm_82038.1	chr9	122128810	122129010	+	1	NA	NA	NA	11644	NM_133741	20623	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0.015000	0.467662	
mm_92895.1	chr10	82961368	82961568	-	1	NA	NA	NA	-24029	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.020000	0.552239	
mm_53586.1	chr6	137735027	137735227	+	1	NA	NA	NA	45	NM_011499	20901	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0.135000	0.726368	
mm_117195.1	chr13	63573315	63573515	-	1	NA	NA	NA	45	NM_001328514	19206	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes	patched 1	protein-coding	0.100000	0.606965	
mm_107447.1	chr12	36676623	36676823	+	1	NA	NA	NA	-139482	NR_039558	100628578		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA	0.005000	0.422886	
mm_161834.1	chr17	84435499	84435699	-	1	NA	NA	NA	30609	NM_183021	240174	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.010000	0.378109	
mm_51938.1	chr6	91699047	91699247	+	1	NA	NA	NA	15080	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.005000	0.562189	
mm_148202.1	chr18	79109867	79110067	-	1	NA	NA	NA	-576	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.150000	0.786070	
mm_60369.1	chr7	44462935	44463135	+	1	NA	NA	NA	-2400	NM_026690	68352	Mm.88478	NM_026690	ENSMUSG00000038704	Aspdh	0610012D14Rik	aspartate dehydrogenase domain containing	protein-coding	0.035000	0.547264	25(CCTTTTATGGCT,+,0.00)
mm_95831.1	chr11	55470073	55470273	+	1	NA	NA	NA	421	NM_013716	27041	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0.065000	0.631841	
mm_9749.1	chr1	180696925	180697125	-	1	NA	NA	NA	9	NM_013729	27217	Mm.103647	NM_013729	ENSMUSG00000026497	Mixl1	Mm1|Mml	Mix1 homeobox-like 1 (Xenopus laevis)	protein-coding	0.115000	0.721393	
mm_99795.1	chr11	107479457	107479657	+	1	NA	NA	NA	29	NM_025894	66997	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0.100000	0.671642	
mm_96575.1	chr11	69059627	69059827	+	1	NA	NA	NA	-48	NM_028005	71923	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.115000	0.711443	0(GCCCCTTAAAGG,-,0.00),1(CCCCTTAAAGGC,+,0.00),1(CCCCTTAAAGGC,-,0.00),2(CCCTTAAAGGCG,+,0.00),3(CCTTAAAGGCGC,+,0.00)
mm_118770.1	chr14	22694946	22695146	+	1	NA	NA	NA	-152248	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.005000	0.512438	
mm_169926.1	chr16	57391332	57391532	-	1	NA	NA	NA	38155	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.100000	0.601990	
mm_90738.1	chr10	5367594	5367794	-	1	NA	NA	NA	120620	NM_001347711	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.030000	0.447761	
mm_91660.1	chr10	42863899	42864099	-	1	NA	NA	NA	3487	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.035000	0.567164	
mm_111738.1	chr12	103865633	103865833	-	1	NA	NA	NA	-2114	NM_009243	20700	Mm.439692	NM_009243	ENSMUSG00000066366	Serpina1a	Aat-2|Aat2|Dom1|PI1|Spi1-1|Spi1-3	serine (or cysteine) peptidase inhibitor, clade A, member 1A	protein-coding	0.000000	0.532338	
mm_129395.1	chr15	78246156	78246356	-	1	NA	NA	NA	1445	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.010000	0.542289	
mm_10925.1	chr2	25428607	25428807	+	1	NA	NA	NA	33	NM_007379	11305	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	0.150000	0.796020	
mm_90661.1	chr10	128805573	128805773	+	1	NA	NA	NA	-3	NM_028873	74330	Mm.296915	NM_028873	ENSMUSG00000025354	Dnajc14	5730551F12Rik|DNAJ|DRIP78|HDJ3|LIP6	DnaJ heat shock protein family (Hsp40) member C14	protein-coding	0.075000	0.671642	
mm_136428.1	chr16	94290912	94291112	-	1	NA	NA	NA	-3156	NM_139145	110948	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.010000	0.348259	
mm_152662.1	chr19	12796490	12796690	-	1	NA	NA	NA	-467	NM_053009	109910	Mm.290924	NM_053009	ENSMUSG00000024695	Zfp91	9130014I08Rik|A530054C17Rik|AL024263|AW545902|Pzf|Zfp-91	zinc finger protein 91	protein-coding	0.050000	0.502488	
mm_142624.1	chr17	47395272	47395472	-	1	NA	NA	NA	5234	NM_008189	14913	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	0.040000	0.462687	
mm_79775.1	chr9	62844502	62844702	+	1	NA	NA	NA	5815	NM_001033175	76524	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.015000	0.572139	
mm_63303.1	chr7	126823790	126823990	+	1	NA	NA	NA	587	NM_029978	68952	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0.020000	0.611940	
mm_39459.1	chr5	17577726	17577926	+	1	NA	NA	NA	3010	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.005000	0.407960	
mm_124690.1	chr15	6435344	6435544	+	1	NA	NA	NA	-9889	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.020000	0.562189	
mm_13150.1	chr2	92375624	92375824	+	1	NA	NA	NA	485	NM_145122	18633	Mm.202782	NM_145122	ENSMUSG00000027222	Pex16	-	peroxisomal biogenesis factor 16	protein-coding	0.035000	0.597015	
mm_117967.1	chr13	99853156	99853356	-	1	NA	NA	NA	47427	NM_013732	27220	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	0.010000	0.522388	
mm_156605.1	chrX	153139983	153140183	+	1	NA	NA	NA	125	NM_001004154	245670	Mm.190922	NM_001004154	ENSMUSG00000041658	Rragb	-	Ras-related GTP binding B	protein-coding	0.065000	0.592040	
mm_7137.1	chr1	91057622	91057822	-	1	NA	NA	NA	4278	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.025000	0.432836	
mm_82834.1	chr9	31150158	31150358	-	1	NA	NA	NA	-18459	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.015000	0.502488	
mm_46717.1	chr5	110448427	110448627	-	1	NA	NA	NA	-24	NM_001142642	381668	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.095000	0.701493	
mm_105274.1	chr11	102407343	102407543	-	1	NA	NA	NA	74	NM_026542	68066	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.130000	0.786070	
mm_84065.1	chr9	58201239	58201439	-	1	NA	NA	NA	376	NM_001161535	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.015000	0.582090	
mm_61142.1	chr7	57468486	57468686	+	1	NA	NA	NA	41423	NM_176942	110886	Mm.273114	NM_176942	ENSMUSG00000055078	Gabra5	A230018I05Rik	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5	protein-coding	0.000000	0.268657	-82(TGTTTTAAAAGG,-,0.00),-81(GTTTTAAAAGGG,+,0.00)
mm_31886.1	chr4	82505839	82506039	+	1	NA	NA	NA	-160	NM_008687	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.050000	0.537313	
mm_135621.1	chr16	52272101	52272301	-	1	NA	NA	NA	180880	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.417910	
mm_148947.1	chr19	7268103	7268303	+	1	NA	NA	NA	-76	NM_001320554	104383	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.070000	0.731343	
mm_116139.1	chr13	29431148	29431348	-	1	NA	NA	NA	414993	NR_045075	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0.010000	0.462687	
mm_24793.1	chr3	95545381	95545581	+	1	NA	NA	NA	-14196	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.040000	0.522388	
mm_88819.1	chr10	80802715	80802915	+	1	NA	NA	NA	-2433	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.025000	0.621891	
mm_86735.1	chr10	19087242	19087442	+	1	NA	NA	NA	-54407	NR_038021	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.000000	0.402985	
mm_135632.1	chr16	52332355	52332555	-	1	NA	NA	NA	120626	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.457711	
mm_47671.1	chr5	127632831	127633031	-	1	NA	NA	NA	669	NM_177005	319804	Mm.237888	NM_177005	ENSMUSG00000049971	Glt1d1	5730455A04Rik	glycosyltransferase 1 domain containing 1	protein-coding	0.055000	0.611940	
mm_52629.1	chr6	117174155	117174355	+	1	NA	NA	NA	5720	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.020000	0.547264	
mm_82700.1	chr9	22445532	22445732	-	1	NA	NA	NA	22724	NM_018739	55934	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	0.000000	0.437811	-31(GGGTCTTAAAAC,-,0.00)
mm_12864.1	chr2	83806492	83806692	+	1	NA	NA	NA	-6136	NM_175514	241520	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	0.000000	0.278607	66(GTTTTAAAACAC,+,0.00)
mm_88923.1	chr10	81194592	81194792	+	1	NA	NA	NA	1	NR_015477	69678	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0.050000	0.562189	-34(GTGTCTATAAAG,-,0.00),-32(GTCTATAAAGCC,+,0.00)
mm_79920.1	chr9	65587067	65587267	+	1	NA	NA	NA	-38	NM_172453	208084	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0.050000	0.512438	
mm_146193.1	chr18	76165043	76165243	+	1	NA	NA	NA	-5409	NR_105776	102465184		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	0.025000	0.577114	
mm_149368.1	chr19	11372436	11372636	+	1	NA	NA	NA	-2952	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.005000	0.353234	65(CTTTTTAAATGC,+,0.00)
mm_172997.1	chrM	1436	1636	+	1	NA	NA	NA	NA	NA									0.010000	0.323383	26(CCTTTAATAGTG,+,0.00),69(AGGCCTAAAAGC,-,0.00)
mm_91382.1	chr10	30618389	30618589	-	1	NA	NA	NA	-123	NM_025798	66847	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	0.100000	0.676617	-33(CCCTTTTAGAGG,-,0.00),-32(CCTTTTAGAGGC,+,0.00)
mm_152414.1	chr19	10667514	10667714	-	1	NA	NA	NA	10457	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.000000	0.447761	19(CCATTAATACAC,+,0.00),76(ACCTTTAAAAAC,-,0.00),77(CCTTTAAAAACA,+,0.00)
mm_2617.1	chr1	120490818	120491018	+	1	NA	NA	NA	14166	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.010000	0.557214	
mm_115765.1	chr13	19304284	19304484	-	1	NA	NA	NA	91429	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.437811	
mm_171673.1	chr4	4890357	4890557	-	1	NA	NA	NA	-97151	NM_177730	242291	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	0.030000	0.472637	-37(CTCTTTAAAGAG,+,0.00),-37(CTCTTTAAAGAG,-,0.00)
mm_23607.1	chr3	65449448	65449648	+	1	NA	NA	NA	-56995	NM_026155	67437	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.005000	0.502488	
mm_129465.1	chr15	78597857	78598057	-	1	NA	NA	NA	910	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.010000	0.597015	
mm_67329.1	chr7	79732811	79733011	-	1	NA	NA	NA	-135	NM_001113471	103968	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	0.005000	0.557214	
mm_60685.1	chr7	45154338	45154538	+	1	NA	NA	NA	100	NM_145954	69748	Mm.82139	NM_145954	ENSMUSG00000007833	Aldh16a1	2410004H02Rik|AI452234|mFLJ00209	aldehyde dehydrogenase 16 family, member A1	protein-coding	0.110000	0.671642	
mm_25013.1	chr3	97930308	97930508	+	1	NA	NA	NA	235	NM_001033779	433632	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.030000	0.457711	
mm_21498.1	chr2	163419428	163419628	-	1	NA	NA	NA	-58	NM_025699	66680	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	0.140000	0.711443	
mm_106520.1	chr11	120551121	120551321	-	1	NA	NA	NA	-89	NM_026814	68701	Mm.46477	NM_026814	ENSMUSG00000025129	Ppp1r27	1110033I14Rik|Dysfip1|toonin	protein phosphatase 1, regulatory subunit 27	protein-coding	0.045000	0.542289	34(GGCTTTATATAG,-,0.00),36(CTTTATATAGCC,+,0.00),55(CCCTTTATAAGC,+,0.00),55(CCCTTTATAAGC,-,0.00)
mm_155156.1	chrX	52926889	52927089	+	1	NA	NA	NA	14775	NM_001290546	70998	Mm.26870	NM_027642	ENSMUSG00000025626	Phf6	2700007B13Rik|4931428F02Rik|mKIAA1823	PHD finger protein 6	protein-coding	0.025000	0.557214	
mm_151642.1	chr19	4037822	4038022	-	1	NA	NA	NA	-10	NM_013541	14870	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	0.080000	0.641791	-35(CCCCTTATAAGG,-,0.00),-33(CCTTATAAGGCT,+,0.00)
mm_99301.1	chr11	101367617	101367817	+	1	NA	NA	NA	1	NM_008061	14377	Mm.18064	NM_008061	ENSMUSG00000078650	G6pc	AW107337|G6Pase|G6pt|Glc-6-Pase	glucose-6-phosphatase, catalytic	protein-coding	0.010000	0.507463	
mm_126899.1	chr15	89523673	89523873	+	1	NA	NA	NA	23916	NM_021423	58234	Mm.146855	NM_021423	ENSMUSG00000022623	Shank3	AI841104|SHANK3c-3|SHANK3c-4|Shank3b	SH3/ankyrin domain gene 3	protein-coding	0.190000	0.875622	
mm_28988.1	chr3	101287788	101287988	-	1	NA	NA	NA	51	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.025000	0.512438	
mm_110377.1	chr12	40204259	40204459	-	1	NA	NA	NA	-5044	NM_001033437	380755	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	0.015000	0.422886	
mm_54441.1	chr6	34419338	34419538	-	1	NA	NA	NA	7076	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.005000	0.412935	
mm_13566.1	chr2	112266433	112266633	+	1	NA	NA	NA	219	NM_133649	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.025000	0.482587	
mm_109415.1	chr12	110484000	110484200	+	1	NA	NA	NA	-1639	NM_001081457	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.020000	0.547264	
mm_64103.1	chr7	141022295	141022495	+	1	NA	NA	NA	-5503	NM_001033632	213002	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.000000	0.427861	
mm_111727.1	chr12	103767796	103767996	-	1	NA	NA	NA	5737	NM_009246	20703	Mm.439695	NM_009246	ENSMUSG00000071177	Serpina1d	AI118301|Dom4|PI4|Spi1-4	serine (or cysteine) peptidase inhibitor, clade A, member 1D	protein-coding	0.005000	0.542289	
mm_3021.1	chr1	133365075	133365275	+	1	NA	NA	NA	1603	NM_175443	214253	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	0.000000	0.562189	
mm_68443.1	chr7	109986178	109986378	-	1	NA	NA	NA	-48	NM_153525	233724	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	0.105000	0.671642	
mm_58761.1	chr7	13733403	13733603	+	1	NA	NA	NA	-3	NM_009286	100043194	Mm.457986	NM_009286	ENSMUSG00000070811	Sult2a2	C730007P19Rik|ST|ST2A2|Sth2|mSTa2	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 2	protein-coding	0.005000	0.353234	
mm_103471.1	chr11	76479609	76479809	-	1	NA	NA	NA	-11244	NM_001291186	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.005000	0.502488	
mm_129632.1	chr15	80229852	80230052	-	1	NA	NA	NA	-4128	NM_178719	239555	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.015000	0.532338	
mm_8655.1	chr1	156471418	156471618	-	1	NA	NA	NA	2810	NM_009230	20652	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0.010000	0.417910	
mm_22128.1	chr2	170387855	170388055	-	1	NA	NA	NA	31594	NR_040610	73303	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.030000	0.532338	
mm_121501.1	chr14	121928555	121928755	+	1	NA	NA	NA	-12881	NM_182806	110168	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	0.005000	0.398010	
mm_129104.1	chr15	76048393	76048593	-	1	NA	NA	NA	16395	NR_105917	102466772		NR_105917	ENSMUSG00000098451	Mir6952	Gm27948|mmu-mir-6952	microRNA 6952	ncRNA	0.055000	0.631841	
mm_90709.1	chr10	3267671	3267871	-	1	NA	NA	NA	0	NM_001204916	670558	Mm.398582	NM_001204916	ENSMUSG00000091618	H60c	4632413I24Rik|Gm9491	histocompatibility 60c	protein-coding	0.020000	0.547264	
mm_162453.1	chr1	125676999	125677199	+	1	NA	NA	NA	103	NM_027677	71111	Mm.32727	NM_027677	ENSMUSG00000026343	Gpr39	4933415E13Rik	G protein-coupled receptor 39	protein-coding	0.045000	0.572139	
mm_123997.1	chr14	75786937	75787137	-	1	NA	NA	NA	0	NM_026232	67554	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0.110000	0.701493	
mm_109256.1	chr12	109459770	109459970	+	1	NA	NA	NA	6415	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.090000	0.676617	
mm_69511.1	chr7	134498835	134499035	-	1	NA	NA	NA	-122107	NM_001081331	71007	Mm.334285	NM_001081331	ENSMUSG00000030994	D7Ertd443e	4933400E14Rik|FATS|Gm497	DNA segment, Chr 7, ERATO Doi 443, expressed	protein-coding	0.030000	0.537313	
mm_48186.1	chr5	137502274	137502474	-	1	NA	NA	NA	55	NM_028753	74097	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	0.105000	0.621891	
mm_30266.1	chr3	146770457	146770657	-	1	NA	NA	NA	136	NM_001164199	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.035000	0.502488	-14(GCATTTAGGCGC,+,0.00),62(GCATTTAAAGAT,+,0.00)
mm_100785.1	chr11	4833019	4833219	-	1	NA	NA	NA	16	NM_001252253	18016	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	0.015000	0.407960	
mm_28592.1	chr3	94435985	94436185	-	1	NA	NA	NA	566	NM_016901	53814	Mm.440422	NM_016901	ENSMUSG00000028141	Oaz3	AZ3|Az-3|Oaz-t	ornithine decarboxylase antizyme 3	protein-coding	0.015000	0.557214	
mm_120114.1	chr14	59478923	59479123	+	1	NA	NA	NA	38042	NM_026908	69008	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding	0.025000	0.427861	
mm_45453.1	chr5	67744607	67744807	-	1	NA	NA	NA	102724	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.005000	0.427861	
mm_81811.1	chr9	117872130	117872330	+	1	NA	NA	NA	-168292	NM_001286508	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.065000	0.577114	
mm_98513.1	chr11	94952294	94952494	+	1	NA	NA	NA	-15199	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.030000	0.572139	
mm_157534.1	chrX	51115854	51116054	-	1	NA	NA	NA	90036	NM_001310515	171170	Mm.295324	NM_134163	ENSMUSG00000036109	Mbnl3	A530038J18Rik|AI661274|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL	muscleblind-like 3 (Drosophila)	protein-coding	0.005000	0.472637	
mm_167339.1	chr8	72772807	72773007	+	1	NA	NA	NA	11248	NM_007975	14065	Mm.12948	NM_007975	ENSMUSG00000050147	F2rl3	PAR4	coagulation factor II (thrombin) receptor-like 3	protein-coding	0.000000	0.293532	
mm_147550.1	chr18	54907987	54908187	-	1	NA	NA	NA	82093	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.005000	0.407960	
mm_21965.1	chr2	167299626	167299826	-	1	NA	NA	NA	49452	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.000000	0.487562	
mm_71633.1	chr8	57487943	57488143	+	1	NA	NA	NA	80	NR_126555	78353	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	0.065000	0.532338	
mm_40945.1	chr5	76822377	76822577	+	1	NA	NA	NA	-18122	NM_001163793	320827	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.030000	0.482587	15(CCTTTTAAGAAG,+,0.00)
mm_48061.1	chr5	136566508	136566708	-	1	NA	NA	NA	-627	NM_001291233	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.085000	0.681592	
mm_16364.1	chr2	174760273	174760473	+	1	NA	NA	NA	-246	NM_007903	13616	Mm.9478	NM_007903	ENSMUSG00000027524	Edn3	ET-3|PPET3|ls|tmgc48	endothelin 3	protein-coding	0.015000	0.552239	
mm_32506.1	chr4	108473503	108473703	+	1	NA	NA	NA	14177	NM_175472	230594	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.005000	0.338308	
mm_55096.1	chr6	49366717	49366917	-	1	NA	NA	NA	-922	NM_001172216	231946	Mm.35199	NM_172727	ENSMUSG00000047115	Fam221a	D330028D13Rik	family with sequence similarity 221, member A	protein-coding	0.025000	0.482587	
mm_96258.1	chr11	62603087	62603287	+	1	NA	NA	NA	101	NR_028526	100217426		NR_028526	ENSMUSG00000064437	Snord49b	MBII-252|MBII-366	small nucleolar RNA, C/D box 49B	snoRNA	0.050000	0.482587	
mm_135741.1	chr16	55847712	55847912	-	1	NA	NA	NA	-9171	NM_001159395	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.020000	0.437811	
mm_68784.1	chr7	123286893	123287093	-	1	NA	NA	NA	72127	NM_146198	233836	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.015000	0.592040	
mm_135871.1	chr16	62786670	62786870	-	1	NA	NA	NA	-54	NM_178925	106338	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	0.095000	0.611940	
mm_125982.1	chr15	76331425	76331625	+	1	NA	NA	NA	231	NM_010331	14731	Mm.5903	NM_010331	ENSMUSG00000022561	Gpaa1	C80044|mGAA1	GPI anchor attachment protein 1	protein-coding	0.055000	0.597015	
mm_129232.1	chr15	76616369	76616569	-	1	NA	NA	NA	383	NM_028064	72027	Mm.276829	NM_028064	ENSMUSG00000063354	Slc39a4	1600025H15Rik|AU041686|AWMS2|ZIP4	solute carrier family 39 (zinc transporter), member 4	protein-coding	0.025000	0.661692	
mm_70949.1	chr8	26975851	26976051	+	1	NA	NA	NA	-1385	NM_001101502	353310	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.030000	0.482587	
mm_100398.1	chr11	119392186	119392386	+	1	NA	NA	NA	1814	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.015000	0.577114	
mm_127682.1	chr15	102936748	102936948	+	1	NA	NA	NA	-5	NM_010463	15421	Mm.221179	NM_010463	ENSMUSG00000050328	Hoxc12	Hox-3.8	homeobox C12	protein-coding	0.060000	0.547264	
mm_111047.1	chr12	79692065	79692265	-	1	NA	NA	NA	232568	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.025000	0.437811	-27(TACTCTAAAGGG,-,0.00)
mm_168755.1	chr12	115964204	115964404	-	1	NA	NA	NA	-83420	NM_001004066	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0.005000	0.432836	
mm_98389.1	chr11	94213726	94213926	+	1	NA	NA	NA	2372	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.030000	0.477612	
mm_136099.1	chr16	85082776	85082976	-	1	NA	NA	NA	90831	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.060000	0.542289	
mm_31473.1	chr4	50177485	50177685	+	1	NA	NA	NA	-331816	NM_001276355	242443	Mm.440095	NM_001033351	ENSMUSG00000039579	Grin3a	6430537F04|A830097C19Rik|NMDAR-L|NR3A|mKIAA1973	glutamate receptor ionotropic, NMDA3A	protein-coding	0.005000	0.402985	
mm_5108.1	chr1	5618106	5618306	-	1	NA	NA	NA	29713	NM_001204371	18387	Mm.7977	NM_011011	ENSMUSG00000025905	Oprk1	K-OR-1|KOR|KOR-1|MSL-1|Oprk2|R21	opioid receptor, kappa 1	protein-coding	0.005000	0.482587	
mm_589.1	chr1	39535693	39535893	+	1	NA	NA	NA	-9	NM_028043	52846	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0.140000	0.686567	
mm_18136.1	chr2	45022871	45023071	-	1	NA	NA	NA	206	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.552239	
mm_46651.1	chr5	108629637	108629837	-	1	NA	NA	NA	40	NM_153569	231580	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	0.135000	0.711443	
mm_115621.1	chr13	12082451	12082651	-	1	NA	NA	NA	24394	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.005000	0.452736	
mm_71154.1	chr8	40124536	40124736	+	1	NA	NA	NA	103151	NR_035426	100316806		NR_035426	ENSMUSG00000080653	Mir669e	Mirn669e|mmu-mir-669e	microRNA 669e	ncRNA	0.005000	0.432836	83(TCTTTAAAGGTC,+,0.00)
mm_85316.1	chr9	101198985	101199185	-	1	NA	NA	NA	-12	NM_172144	235542	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0.015000	0.427861	
mm_13513.1	chr2	109917482	109917682	+	1	NA	NA	NA	-65	NM_172671	107515	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	0.075000	0.597015	
mm_72187.1	chr8	72475267	72475467	+	1	NA	NA	NA	-134	NM_138585	27967	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	0.110000	0.636816	
mm_155592.1	chrX	81094441	81094641	+	1	NA	NA	NA	23897	NM_138751	192216	Mm.490421	NM_138751	ENSMUSG00000025666	Tmem47	3010015F07Rik|AI115536|BCMP1|Tm4sf10	transmembrane protein 47	protein-coding	0.005000	0.407960	
mm_152162.1	chr19	7275850	7276050	-	1	NA	NA	NA	7671	NM_001320554	104383	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.010000	0.557214	
mm_138172.1	chr17	34264729	34264929	+	1	NA	NA	NA	1602	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.125000	0.641791	
mm_24070.1	chr3	87919443	87919643	+	1	NA	NA	NA	-1	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.050000	0.472637	
mm_120688.1	chr14	70774288	70774488	+	1	NA	NA	NA	7	NM_010071	13449	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip	docking protein 2	protein-coding	0.010000	0.532338	
mm_73522.1	chr8	107506161	107506361	+	1	NA	NA	NA	-44983	NR_029553	387158		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0.015000	0.512438	
mm_153097.1	chr19	32712212	32712412	-	1	NA	NA	NA	-14	NM_026487	67979	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.115000	0.736318	
mm_17968.1	chr2	37582954	37583154	-	1	NA	NA	NA	64231	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding	0.005000	0.383085	62(CCCCATAAAAAC,-,0.00)
mm_11296.1	chr2	30146716	30146916	+	1	NA	NA	NA	13070	NM_146252	70296	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0.035000	0.562189	
mm_144487.1	chr18	24154464	24154664	+	1	NA	NA	NA	-32745	NM_172625	225280	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0.010000	0.517413	
mm_164621.1	chr17	31186140	31186340	-	1	NA	NA	NA	11509	NM_080727	140765	Mm.214638	NM_080727	ENSMUSG00000024034	Tmprss3	-	transmembrane protease, serine 3	protein-coding	0.005000	0.482587	
mm_4305.1	chr1	171840524	171840724	+	1	NA	NA	NA	927	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.010000	0.472637	
mm_62157.1	chr7	97148788	97148988	+	1	NA	NA	NA	67137	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.000000	0.278607	
mm_1521.1	chr1	72824452	72824652	+	1	NA	NA	NA	72	NM_008342	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.085000	0.661692	-94(GGCTTTTTAGGA,-,0.00)
mm_147461.1	chr18	46597412	46597612	-	1	NA	NA	NA	23	NM_025698	66676	Mm.296043	NM_025698	ENSMUSG00000033184	Tmed7	3930401E15Rik|5830493P14Rik|AU044611|AW545765|TRAM	transmembrane p24 trafficking protein 7	protein-coding	0.110000	0.726368	
mm_106697.1	chr12	3463305	3463505	+	1	NA	NA	NA	36548	NM_172421	75302	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2 (Drosophila)	protein-coding	0.005000	0.293532	-73(CTTTTTATGTGC,+,0.00)
mm_63894.1	chr7	138846547	138846747	+	1	NA	NA	NA	261	NM_026391	52432	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	0.130000	0.756219	
mm_75596.1	chr8	61700348	61700548	-	1	NA	NA	NA	59650	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.000000	0.323383	
mm_152866.1	chr19	24224924	24225124	-	1	NA	NA	NA	2	NM_011597	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.065000	0.636816	
mm_50451.1	chr6	48905988	48906188	+	1	NA	NA	NA	1102	NM_001161621	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.040000	0.601990	
mm_39365.1	chr5	9161753	9161953	+	1	NA	NA	NA	-77	NM_011806	23857	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0.135000	0.726368	
mm_167721.1	chr9	101073960	101074160	+	1	NA	NA	NA	-702	NM_001100451	77853	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	male-specific lethal 2 homolog (Drosophila)	protein-coding	0.100000	0.691542	-100(GGCTTTTAGAGG,-,0.00),-99(GCTTTTAGAGGA,+,0.00)
mm_23820.1	chr3	80687892	80688092	+	1	NA	NA	NA	114799	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.000000	0.303483	
mm_135227.1	chr16	36784888	36785088	-	1	NA	NA	NA	-26	NM_021301	57738	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.020000	0.462687	
mm_32354.1	chr4	105157266	105157466	+	1	NA	NA	NA	19	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.050000	0.577114	-52(CGCTTTTTAAAG,-,0.00),-51(GCTTTTTAAAGG,-,0.00),-50(CTTTTTAAAGGC,+,0.00)
mm_130534.1	chr15	98934454	98934654	-	1	NA	NA	NA	-164	NM_011654	22143	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.150000	0.815920	
mm_100149.1	chr11	116030582	116030782	+	1	NA	NA	NA	366	NM_172569	217331	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0.065000	0.641791	
mm_97366.1	chr11	77515016	77515216	+	1	NA	NA	NA	-1	NM_026185	67477	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	0.110000	0.726368	
mm_149835.1	chr19	24875584	24875784	+	1	NA	NA	NA	-13842	NM_175013	226041	Mm.105222	NM_175013	ENSMUSG00000041731	Pgm5	4833423B07|9530034F03Rik|D830025G17|aciculin	phosphoglucomutase 5	protein-coding	0.075000	0.492537	
mm_14965.1	chr2	152081538	152081738	+	1	NA	NA	NA	109	NM_001160410	545474	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.045000	0.597015	
mm_26316.1	chr3	142520545	142520745	+	1	NA	NA	NA	-9691	NM_001083312	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.010000	0.467662	
mm_31653.1	chr4	59805772	59805972	+	1	NA	NA	NA	222	NM_172468	209131	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.110000	0.736318	
mm_26753.1	chr3	7954767	7954967	-	1	NA	NA	NA	20	NR_040587	75476	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	0.005000	0.363184	
mm_93478.1	chr10	111993433	111993633	-	1	NA	NA	NA	3731	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.010000	0.437811	
mm_115831.1	chr13	21286841	21287041	-	1	NA	NA	NA	5745	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.010000	0.452736	
mm_23997.1	chr3	86548781	86548981	+	1	NA	NA	NA	-598	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.020000	0.477612	
mm_156130.1	chrX	120290226	120290426	+	1	NA	NA	NA	-1	NM_001271809	245578	Mm.39691	NM_001081385	ENSMUSG00000034755	Pcdh11x	PCDHX|PCDHX11|Pcdh11	protocadherin 11 X-linked	protein-coding	0.050000	0.646766	
mm_54707.1	chr6	39654015	39654215	-	1	NA	NA	NA	61532	NM_026612	68198	Mm.29415	NM_026612	ENSMUSG00000002416	Ndufb2	1810011O01Rik|8kDa|AGGG|AI325567|CI-AGGG	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2	protein-coding	0.005000	0.462687	
mm_55995.1	chr6	86371295	86371495	-	1	NA	NA	NA	-145	NM_026506	68011	Mm.276802	NM_026506	ENSMUSG00000057278	Snrpg	2810024K17Rik|AL022803|SMG|sm-G|snRNP-G	small nuclear ribonucleoprotein polypeptide G	protein-coding	0.085000	0.552239	79(CACTTTAAAAAC,-,0.00)
mm_36323.1	chr4	70378111	70378311	-	1	NA	NA	NA	32224	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.025000	0.407960	
mm_86723.1	chr10	19062541	19062741	+	1	NA	NA	NA	-47231	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.010000	0.467662	
mm_160943.1	chr11	95261483	95261683	+	1	NA	NA	NA	54	NM_053093	93670	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0.010000	0.597015	
mm_7623.1	chr1	127242076	127242276	-	1	NA	NA	NA	37190	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.010000	0.502488	
mm_20176.1	chr2	122469035	122469235	-	1	NA	NA	NA	-1338	NR_027919	81913	Mm.122640	NR_027919		Bambi-ps1	-	BMP and activin membrane-bound inhibitor, pseudogene (Xenopus laevis)	pseudo	0.015000	0.437811	
mm_86014.1	chr9	112234744	112234944	-	1	NA	NA	NA	-3	NM_001177619	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.065000	0.656716	
mm_37375.1	chr4	120972019	120972219	-	1	NA	NA	NA	1203	NR_105982	102465614		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.020000	0.587065	77(GGCTATATGGGG,-,0.00)
mm_152177.1	chr19	7382893	7383093	-	1	NA	NA	NA	-10	NR_045703	654802	Mm.414924	NR_045703		1700105P06Rik	-	RIKEN cDNA 1700105P06 gene	ncRNA	0.125000	0.736318	-34(CTCCATAAAAGG,-,0.00)
mm_160915.1	chr11	83409381	83409581	+	1	NA	NA	NA	-591	NM_001013386	276952	Mm.66275	NM_001013386	ENSMUSG00000020684	Rasl10b	B230331P10Rik|Gm729|VTS58635	RAS-like, family 10, member B	protein-coding	0.070000	0.661692	
mm_114269.1	chr13	58148419	58148619	+	1	NA	NA	NA	1570	NR_126543	67339	Mm.121929	NR_126543		1700066J03Rik	-	RIKEN cDNA 1700066J03 gene	ncRNA	0.015000	0.492537	
mm_55419.1	chr6	65127201	65127401	-	1	NA	NA	NA	17429	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.010000	0.388060	
mm_124265.1	chr14	102979686	102979886	-	1	NA	NA	NA	2846	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.020000	0.467662	
mm_90903.1	chr10	11080905	11081105	-	1	NA	NA	NA	1326	NM_001114333	14816	Mm.391904	NM_016976	ENSMUSG00000019828	Grm1	4930455H15Rik|ENSMUSG00000075319|Gm10828|Gprc1a|mGluR1|nmf373|rcw|wobl	glutamate receptor, metabotropic 1	protein-coding	0.035000	0.532338	
mm_160120.1	chr7	27607401	27607601	+	1	NA	NA	NA	165	NM_001331109	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.015000	0.567164	
mm_13306.1	chr2	102658478	102658678	+	1	NA	NA	NA	-105	NM_001077514	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.035000	0.507463	
mm_137145.1	chr17	23664913	23665113	+	1	NA	NA	NA	4507	NM_153784	212733	Mm.59997	NM_153784	ENSMUSG00000043782	Ccdc64b	BICDR-2|Bicdl2	coiled-coil domain containing 64B	protein-coding	0.030000	0.572139	
mm_54591.1	chr6	38147353	38147553	-	1	NA	NA	NA	-22867	NM_080467	140494	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	0.015000	0.547264	
mm_141609.1	chr17	32809748	32809948	-	1	NA	NA	NA	83	NM_001267583	240063	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	0.020000	0.517413	
mm_127709.1	chr15	103009431	103009631	+	1	NA	NA	NA	-31	NM_010465	15425	Mm.4444	NM_010465	ENSMUSG00000001661	Hoxc6	Hox-3.3|Hox-6.1	homeobox C6	protein-coding	0.020000	0.442786	
mm_155151.1	chrX	52912114	52912314	+	1	NA	NA	NA	0	NM_027642	70998	Mm.26870	NM_027642	ENSMUSG00000025626	Phf6	2700007B13Rik|4931428F02Rik|mKIAA1823	PHD finger protein 6	protein-coding	0.155000	0.706468	
mm_91462.1	chr10	34096431	34096631	-	1	NA	NA	NA	-12	NM_178908	103511	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404	family with sequence similarity 26, member E	protein-coding	0.025000	0.487562	
mm_10053.1	chr1	193201503	193201703	-	1	NA	NA	NA	-57	NM_153137	215243	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	0.005000	0.562189	
mm_76972.1	chr8	106283115	106283315	-	1	NA	NA	NA	986	NR_126090	75044	Mm.445896	NR_126090		4930506A18Rik	-	RIKEN cDNA 4930506A18 gene	ncRNA	0.015000	0.592040	-33(GCCTATTTAAGC,-,0.00)
mm_165137.1	chr2	11332695	11332895	+	1	NA	NA	NA	-6694	NR_040369	100503147	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	OTTMUSG00000011311	predicted gene 13293	ncRNA	0.015000	0.467662	
mm_32145.1	chr4	99656269	99656469	+	1	NA	NA	NA	70	NM_010425	15221	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	0.120000	0.681592	
mm_103105.1	chr11	69965138	69965338	-	1	NA	NA	NA	-183	NM_016887	53624	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	0.045000	0.601990	
mm_128059.1	chr15	26639428	26639628	-	1	NA	NA	NA	256036	NM_176959	448987	Mm.253378	NM_176959	ENSMUSG00000043556	Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding	0.010000	0.338308	-54(GGCTATAAAAAA,-,0.00)
mm_18527.1	chr2	63184173	63184373	-	1	NA	NA	NA	14	NM_133207	170738	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.095000	0.676617	
mm_95316.1	chr11	46436836	46437036	+	1	NA	NA	NA	-11	NM_001104557	66213	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	0.070000	0.582090	
mm_1946.1	chr1	86308467	86308667	+	1	NA	NA	NA	5346	NM_145222	227327	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.000000	0.517413	
mm_77555.1	chr8	123284080	123284280	-	1	NA	NA	NA	-29958	NM_028200	72325	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	0.015000	0.542289	
mm_164558.1	chr17	14961167	14961367	-	1	NA	NA	NA	-7	NM_024250	72057	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	0.210000	0.890547	
mm_103901.1	chr11	83575836	83576036	-	1	NA	NA	NA	2700	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.015000	0.517413	
mm_1767.1	chr1	77050194	77050394	+	1	NA	NA	NA	446474	NR_105770	102465180		NR_105770	ENSMUSG00000099141	Mir6352	Gm27481|mmu-mir-6352	microRNA 6352	ncRNA	0.010000	0.353234	
mm_93676.1	chr10	117715148	117715348	-	1	NA	NA	NA	-4490	NM_001288586	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.000000	0.467662	
mm_125279.1	chr15	36282405	36282605	+	1	NA	NA	NA	642	NM_013923	30945	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0.110000	0.711443	
mm_137945.1	chr17	32810032	32810232	+	1	NA	NA	NA	-201	NM_183177	240063	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	0.015000	0.512438	
mm_158774.1	chrX	167029550	167029750	-	1	NA	NA	NA	40720	NM_001101606	667794	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	0.020000	0.412935	-21(TGCCATAAAAAA,-,0.00)
mm_72080.1	chr8	71570524	71570724	+	1	NA	NA	NA	1697	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.070000	0.621891	
mm_49594.1	chr6	30669995	30670195	+	1	NA	NA	NA	23654	NM_031998	83922	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	0.005000	0.427861	-34(CTCCATTTAAAG,-,0.00),-32(CCATTTAAAGTC,+,0.00)
mm_109391.1	chr12	109747942	109748142	+	1	NA	NA	NA	164	NR_037233	100499517		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	0.040000	0.487562	
mm_65967.1	chr7	30436901	30437101	-	1	NA	NA	NA	8581	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.030000	0.582090	
mm_78809.1	chr9	44067046	44067246	+	1	NA	NA	NA	125	NM_198092	53376	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.090000	0.696517	
mm_1401.1	chr1	67144781	67144981	+	1	NA	NA	NA	21854	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.398010	
mm_128493.1	chr15	51865408	51865608	-	1	NA	NA	NA	-47	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.080000	0.651741	
mm_83903.1	chr9	56160963	56161163	-	1	NA	NA	NA	7	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.120000	0.701493	-65(TCCTTTAAGAGG,-,0.00),-64(CCTTTAAGAGGC,+,0.00)
mm_17145.1	chr2	25196524	25196724	-	1	NA	NA	NA	189	NM_146115	227612	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0.015000	0.601990	
mm_88622.1	chr10	79861587	79861787	+	1	NA	NA	NA	-900	NR_105875	102465549		NR_105875	ENSMUSG00000098562	Mir6910	Gm27763|mmu-mir-6910	microRNA 6910	ncRNA	0.040000	0.487562	
mm_51244.1	chr6	71707732	71707932	+	1	NA	NA	NA	151	NM_178608	52250	Mm.146332	NM_178608	ENSMUSG00000052852	Reep1	D6Ertd253e	receptor accessory protein 1	protein-coding	0.160000	0.791045	
mm_48463.1	chr5	140826757	140826957	-	1	NA	NA	NA	3574	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.000000	0.482587	
mm_44767.1	chr5	31698236	31698436	-	1	NA	NA	NA	286	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.035000	0.512438	
mm_25872.1	chr3	130068291	130068491	+	1	NA	NA	NA	-7484	NM_207209	99683	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.055000	0.442786	
mm_72850.1	chr8	88320654	88320854	+	1	NA	NA	NA	26550	NM_001037724	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.025000	0.517413	
mm_146285.1	chr18	78029972	78030172	+	1	NA	NA	NA	27196	NM_001101038	620235	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0.035000	0.577114	
mm_44140.1	chr5	150196325	150196525	+	1	NA	NA	NA	-63505	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.010000	0.497512	
mm_127517.1	chr15	101939070	101939270	+	1	NA	NA	NA	1154	NM_146063	223917	Mm.162744	NM_146063	ENSMUSG00000061397	Krt79	BC031593	keratin 79	protein-coding	0.025000	0.562189	
mm_158164.1	chrX	103483115	103483315	-	1	NA	NA	NA	18	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.050000	0.532338	
mm_360.1	chr1	33813315	33813515	+	1	NA	NA	NA	1180	NM_133817	98403	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	0.010000	0.442786	
mm_46083.1	chr5	92346716	92346916	-	1	NA	NA	NA	2073	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.010000	0.308458	
mm_22275.1	chr2	178627716	178627916	-	1	NA	NA	NA	197301	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.005000	0.522388	
mm_54237.1	chr6	28242281	28242481	-	1	NA	NA	NA	19220	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.010000	0.298507	
mm_146751.1	chr18	16745251	16745451	-	1	NA	NA	NA	63895	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.000000	0.422886	-93(GGCCCTTTAAAG,-,0.00),-92(GCCCTTTAAAGA,-,0.00),-91(CCCTTTAAAGAC,+,0.00),-91(CCCTTTAAAGAC,-,0.00)
mm_112355.1	chr12	118908825	118909025	-	1	NA	NA	NA	57496	NM_029961	77706	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0.000000	0.288557	
mm_93346.1	chr10	100487180	100487380	-	1	NA	NA	NA	67	NM_001033332	237500	Mm.296805	NM_001033332	ENSMUSG00000036676	Tmtc3	9130014E20Rik|B130008E12Rik|mSmile	transmembrane and tetratricopeptide repeat containing 3	protein-coding	0.095000	0.666667	
mm_24702.1	chr3	95126145	95126345	+	1	NA	NA	NA	1731	NM_016712	50874	Mm.71935	NM_016712	ENSMUSG00000005628	Tmod4	MTMOD|Sk-Tmod	tropomodulin 4	protein-coding	0.005000	0.502488	
mm_134445.1	chr16	18284853	18285053	-	1	NA	NA	NA	-316	NR_128565	104795666		NR_128565	ENSMUSG00000093246	Gm24572	Mir3618|mmu-mir-3618	predicted gene, 24572	ncRNA	0.005000	0.303483	-7(TTTTTTAAAGTC,+,0.00)
mm_26227.1	chr3	138903163	138903363	+	1	NA	NA	NA	161055	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.005000	0.338308	
mm_6661.1	chr1	80218354	80218554	-	1	NA	NA	NA	-4510	NM_173425	241128	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding	0.020000	0.542289	
mm_81175.1	chr9	107307626	107307826	+	1	NA	NA	NA	11067	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.020000	0.567164	
mm_27207.1	chr3	35754540	35754740	-	1	NA	NA	NA	502	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.125000	0.731343	
mm_144758.1	chr18	35771329	35771529	+	1	NA	NA	NA	-130	NM_019912	56550	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0.140000	0.761194	
mm_36850.1	chr4	106799644	106799844	-	1	NA	NA	NA	87	NM_025590	329910	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0.020000	0.606965	
mm_68816.1	chr7	125707678	125707878	-	1	NA	NA	NA	-90	NM_207239	233863	Mm.294173	NM_207239	ENSMUSG00000032777	Gtf3c1	-	general transcription factor III C 1	protein-coding	0.105000	0.681592	
mm_529.1	chr1	37872121	37872321	+	1	NA	NA	NA	15	NM_001037918	623661	Mm.138000	NM_001037918	ENSMUSG00000037216	Lipt1	EG623661	lipoyltransferase 1	protein-coding	0.060000	0.616915	
mm_139914.1	chr17	70963620	70963820	+	1	NA	NA	NA	26796	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.010000	0.457711	
mm_45125.1	chr5	46007497	46007697	-	1	NA	NA	NA	-75188	NR_110478	78106	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	0.020000	0.467662	-45(CCTCTTAAACTG,+,0.00)
mm_16070.1	chr2	168081047	168081247	+	1	NA	NA	NA	143	NM_021409	58220	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0.165000	0.805970	
mm_53823.1	chr6	147257058	147257258	+	1	NA	NA	NA	6855	NM_008970	19227	Mm.28440	NM_008970	ENSMUSG00000048776	Pthlh	PLP|PTH-like|Pthrp	parathyroid hormone-like peptide	protein-coding	0.040000	0.542289	
mm_41777.1	chr5	103715149	103715349	+	1	NA	NA	NA	-38913	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.010000	0.432836	
mm_50847.1	chr6	54849105	54849305	+	1	NA	NA	NA	32289	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.000000	0.457711	
mm_16533.1	chr2	181579262	181579462	+	1	NA	NA	NA	-170	NR_027290	100271841	Mm.438007	NR_027289	ENSMUSG00000010492	Uckl1os	Gm16119|OTTMUSG00000030649	uridine-cytidine kinase 1-like 1, opposite strand	ncRNA	0.010000	0.502488	
mm_167894.1	chrX	69945203	69945403	+	1	NA	NA	NA	22	NM_029316	75509	Mm.233475	NM_029316	ENSMUSG00000059690	1700020N15Rik	-	RIKEN cDNA 1700020N15 gene	protein-coding	0.015000	0.467662	
mm_89335.1	chr10	87933617	87933817	+	1	NA	NA	NA	-32954	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.298507	
mm_59064.1	chr7	19458833	19459033	+	1	NA	NA	NA	-439	NM_172279	232944	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.065000	0.676617	-34(GGCCCTTAAAGG,-,0.00)
mm_57453.1	chr6	125165251	125165451	-	1	NA	NA	NA	422	NM_008084	14433	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0.070000	0.646766	
mm_117014.1	chr13	58123320	58123520	-	1	NA	NA	NA	5136	NM_029872	77134	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	0.020000	0.407960	
mm_60668.1	chr7	45017836	45018036	+	1	NA	NA	NA	-71	NM_009101	20130	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.055000	0.601990	
mm_83595.1	chr9	48489245	48489445	-	1	NA	NA	NA	5985	NM_001326355	67010	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	0.010000	0.363184	38(CCTTTTATGTTG,+,0.00)
mm_15778.1	chr2	164333308	164333508	+	1	NA	NA	NA	643	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.050000	0.507463	
mm_115796.1	chr13	19344236	19344436	-	1	NA	NA	NA	51477	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.417910	
mm_26816.1	chr3	10301114	10301314	-	1	NA	NA	NA	-31	NM_029310	75497	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.020000	0.532338	
mm_102067.1	chr11	52257653	52257853	-	1	NA	NA	NA	24842	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.005000	0.532338	
mm_2133.1	chr1	88070637	88070837	+	1	NA	NA	NA	-42	NM_201644	394434	Mm.300095	NM_201644	ENSMUSG00000090175	Ugt1a9	UDPGT|UDPGT 1-9|UGT1-09|UGT1.9|UGTP4|Ugt1a12|mUGTBr/P	UDP glucuronosyltransferase 1 family, polypeptide A9	protein-coding	0.005000	0.368159	
mm_72089.1	chr8	71580338	71580538	+	1	NA	NA	NA	11511	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.035000	0.562189	
mm_92702.1	chr10	80713924	80714124	-	1	NA	NA	NA	11331	NM_027829	71564	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.050000	0.577114	
mm_173232.1	chrX	8038859	8039059	-	1	NA	NA	NA	-20467	NM_027227	69824	Mm.279756	NM_027227	ENSMUSG00000031163	Glod5	2010001H14Rik|AV061890	glyoxalase domain containing 5	protein-coding	0.015000	0.477612	-87(CCTTATAGATAC,+,0.00)
mm_134998.1	chr16	32165592	32165792	-	1	NA	NA	NA	-98	NM_001347181	224109	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.025000	0.601990	
mm_39764.1	chr5	30013202	30013402	+	1	NA	NA	NA	188	NM_031168	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.020000	0.557214	
mm_74480.1	chr8	4295444	4295644	-	1	NA	NA	NA	-19639	NM_011592	21856	Mm.195249	NM_011592	ENSMUSG00000002949	Timm44	0710005E20Rik|D8Ertd118e|Mimt44|Tim44	translocase of inner mitochondrial membrane 44	protein-coding	0.015000	0.422886	
mm_36487.1	chr4	83052092	83052292	-	1	NA	NA	NA	-25	NM_001198811	329872	Mm.242337	NM_177863	ENSMUSG00000059049	Frem1	BC037594|D430009N09|D630008K06|crf11|eye<m02Jus>|eyes2|heb|qbrick	Fras1 related extracellular matrix protein 1	protein-coding	0.035000	0.557214	
mm_13719.1	chr2	117249640	117249840	+	1	NA	NA	NA	1	NM_026620	68215	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	0.070000	0.601990	
mm_156394.1	chrX	139805974	139806174	+	1	NA	NA	NA	5266	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.015000	0.462687	
mm_37274.1	chr4	118620678	118620878	-	1	NA	NA	NA	-21	NM_026932	69072	Mm.29906	NM_026932	ENSMUSG00000028729	Ebna1bp2	1810014B19Rik|AA537058|B830003A16Rik|C81321|Ebp2|Nobp|p40	EBNA1 binding protein 2	protein-coding	0.060000	0.532338	-65(CCTTTTCAACAG,+,0.00)
mm_115366.1	chr13	112993730	112993930	+	1	NA	NA	NA	-38	NM_001037914	622408	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0.100000	0.721393	
mm_27997.1	chr3	82876303	82876503	-	1	NA	NA	NA	80	NM_001277170	633285	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|ENSMUSG00000033882|Gm761	RNA binding motif protein 46	protein-coding	0.120000	0.701493	
mm_55288.1	chr6	54566190	54566390	-	1	NA	NA	NA	92	NM_027268	69938	Mm.41557	NM_027268	ENSMUSG00000019124	Scrn1	2810019K23Rik|6330535A03Rik|AI852905|SES1|mKIAA0193	secernin 1	protein-coding	0.095000	0.701493	
mm_468.1	chr1	36372103	36372303	+	1	NA	NA	NA	-88	NM_001277076	100534273	Mm.389112	NM_001277076	ENSMUSG00000037432	Fer1l5	4930533C12Rik	fer-1-like 5 (C. elegans)	protein-coding	0.020000	0.537313	
mm_30526.1	chr4	3090207	3090407	+	1	NA	NA	NA	-81776	NM_001167534	100312470	Mm.480297	NM_001167534	ENSMUSG00000094798	Vmn1r2	Gm11776|OTTMUSG00000004179	vomeronasal 1 receptor 2	protein-coding	0.035000	0.388060	
mm_98199.1	chr11	87795688	87795888	+	1	NA	NA	NA	2004	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.020000	0.567164	
mm_93235.1	chr10	95324052	95324252	-	1	NA	NA	NA	-15	NM_009950	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.020000	0.457711	
mm_74142.1	chr8	123254155	123254355	+	1	NA	NA	NA	-33	NM_028200	72325	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	0.130000	0.746269	
mm_128846.1	chr15	71727639	71727839	-	1	NA	NA	NA	99	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding	0.045000	0.641791	
mm_85216.1	chr9	96966480	96966680	-	1	NA	NA	NA	51775	NM_145134	211949	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0.020000	0.517413	
mm_38290.1	chr4	136890344	136890544	-	1	NA	NA	NA	2470	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.035000	0.646766	
mm_128339.1	chr15	38519163	38519363	-	1	NA	NA	NA	3	NM_001301688	54375	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.080000	0.626866	
mm_153910.1	chr19	47138163	47138363	-	1	NA	NA	NA	31	NM_133746	72691	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	0.050000	0.592040	
mm_150343.1	chr19	34607832	34608032	+	1	NA	NA	NA	-25	NM_001005858	667370	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	0.005000	0.502488	
mm_12007.1	chr2	57295715	57295915	+	1	NA	NA	NA	57433	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.005000	0.348259	
mm_148867.1	chr19	6497331	6497531	+	1	NA	NA	NA	45639	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.120000	0.766169	
mm_136945.1	chr17	14399141	14399341	+	1	NA	NA	NA	-299	NR_027986	74917	Mm.32228	NM_183107		4930474M22Rik	-	RIKEN cDNA 4930474M22 gene	ncRNA	0.010000	0.547264	
mm_33919.1	chr4	136538178	136538378	+	1	NA	NA	NA	64445	NM_133872	99982	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	0.030000	0.402985	
mm_136098.1	chr16	85079855	85080055	-	1	NA	NA	NA	93752	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.055000	0.562189	
mm_57300.1	chr6	124496005	124496205	-	1	NA	NA	NA	2992	NM_181344	232371	Mm.132974	NM_181344	ENSMUSG00000038527	C1rl	C1r-LP|C1rl1|C1rlp	complement component 1, r subcomponent-like	protein-coding	0.010000	0.358209	
mm_101776.1	chr11	44617967	44618167	-	1	NA	NA	NA	-33	NM_001290711	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.040000	0.353234	
mm_142526.1	chr17	46407470	46407670	-	1	NA	NA	NA	-21372	NM_053250	114570	Mm.25168	NM_053250	ENSMUSG00000023968	Crip3	TLP|TLP-A|TLP-B|Tlmp	cysteine-rich protein 3	protein-coding	0.000000	0.427861	
mm_99577.1	chr11	104186252	104186452	+	1	NA	NA	NA	25	NM_199019	237958	Mm.117063	NM_199019	ENSMUSG00000049506	Sppl2c	4933407P14Rik|IMP5	signal peptide peptidase 2C	protein-coding	0.010000	0.621891	
mm_42586.1	chr5	117319247	117319447	+	1	NA	NA	NA	81	NM_001033311	231668	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	0.110000	0.741294	
mm_145109.1	chr18	44116093	44116293	+	1	NA	NA	NA	11670	NM_030061	78242	Mm.99782	NM_030061	ENSMUSG00000061144	Spink12	9230117E20Rik	serine peptidase inhibitor, Kazal type 12	protein-coding	0.010000	0.398010	
mm_51043.1	chr6	65612123	65612323	+	1	NA	NA	NA	21825	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.000000	0.363184	
mm_4426.1	chr1	172505661	172505861	+	1	NA	NA	NA	5515	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.005000	0.537313	
mm_32429.1	chr4	107178566	107178766	+	1	NA	NA	NA	36	NM_029565	56374	Mm.291192	NM_029565	ENSMUSG00000028618	Tmem59	1110001M20Rik|3110046P06Rik|AI256529|D4Ertd20e|MTDCF1|ORF18	transmembrane protein 59	protein-coding	0.080000	0.666667	
mm_165400.1	chr2	136501938	136502138	+	1	NA	NA	NA	-30283	NM_175667	319196	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0.010000	0.378109	43(CCCTATATGCCG,+,0.00)
mm_46211.1	chr5	98185843	98186043	-	1	NA	NA	NA	5074	NM_029947	77630	Mm.332511	NM_029947	ENSMUSG00000035456	Prdm8	4930565F05Rik|PFM5	PR domain containing 8	protein-coding	0.150000	0.800995	
mm_103231.1	chr11	70681561	70681761	-	1	NA	NA	NA	6444	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.020000	0.572139	
mm_161182.1	chr13	47063054	47063254	+	1	NA	NA	NA	19655	NM_172262	218214	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	0.045000	0.532338	
mm_161299.1	chr14	30610283	30610483	-	1	NA	NA	NA	-73	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.010000	0.532338	
mm_568.1	chr1	38035702	38035902	+	1	NA	NA	NA	37792	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.010000	0.507463	
mm_64179.1	chr7	141459123	141459323	+	1	NA	NA	NA	-1871	NM_001025103	213573	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.020000	0.577114	
mm_145735.1	chr18	64265097	64265297	+	1	NA	NA	NA	10838	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.100000	0.716418	
mm_157798.1	chrX	73921778	73921978	-	1	NA	NA	NA	66	NM_001310538	56292	Mm.246654	NM_019870	ENSMUSG00000031388	Naa10	2310039H09Rik|Ard1|Ard1a|Te2	N(alpha)-acetyltransferase 10, NatA catalytic subunit	protein-coding	0.105000	0.661692	
mm_27401.1	chr3	51277192	51277392	-	1	NA	NA	NA	222	NM_001291062	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.095000	0.651741	
mm_39156.1	chr4	155482792	155482992	-	1	NA	NA	NA	-8469	NM_001160017	14688	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.020000	0.532338	
mm_76207.1	chr8	83442330	83442530	-	1	NA	NA	NA	232	NM_001285992	56367	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	0.125000	0.756219	
mm_9950.1	chr1	190979087	190979287	-	1	NA	NA	NA	109	NR_027352	226841	Mm.22856	NM_144879	ENSMUSG00000037568	Vash2	B130052G07Rik	vasohibin 2	protein-coding	0.105000	0.641791	
mm_85674.1	chr9	107709845	107710045	-	1	NA	NA	NA	530	NM_011349	20350	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.145000	0.746269	
mm_64767.1	chr7	4971709	4971909	-	1	NA	NA	NA	-848	NM_001200041	381835	Mm.297828	NM_001200041	ENSMUSG00000085272	Sbk3	Gm1078|Sgk110	SH3 domain binding kinase family, member 3	protein-coding	0.010000	0.532338	
mm_84211.1	chr9	61370404	61370604	-	1	NA	NA	NA	-1862	NM_001083928	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.025000	0.497512	
mm_14635.1	chr2	136781666	136781866	+	1	NA	NA	NA	68316	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.005000	0.338308	
mm_100120.1	chr11	115899762	115899962	+	1	NA	NA	NA	-277	NM_183259	66528	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	0.020000	0.616915	
mm_90773.1	chr10	5828003	5828203	-	1	NA	NA	NA	-4160	NM_175374	108853	Mm.55082	NM_175374	ENSMUSG00000019774	Mtrf1l	9130004K12Rik	mitochondrial translational release factor 1-like	protein-coding	0.005000	0.378109	
mm_150978.1	chr19	46501722	46501922	+	1	NA	NA	NA	174	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.135000	0.776119	
mm_98640.1	chr11	96194223	96194423	+	1	NA	NA	NA	-38	NM_008267	15408	Mm.57221	NM_008267	ENSMUSG00000049604	Hoxb13	-	homeobox B13	protein-coding	0.060000	0.621891	
mm_32263.1	chr4	102593616	102593816	+	1	NA	NA	NA	3873	NM_001177981	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.015000	0.383085	
mm_150894.1	chr19	45472637	45472837	+	1	NA	NA	NA	87827	NM_001330506	56626	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0.030000	0.487562	
mm_138201.1	chr17	34293774	34293974	+	1	NA	NA	NA	-6103	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.010000	0.482587	
mm_26210.1	chr3	138742228	138742428	+	1	NA	NA	NA	120	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.180000	0.810945	
mm_26516.1	chr3	145892675	145892875	+	1	NA	NA	NA	-31487	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.005000	0.442786	
mm_117060.1	chr13	58554981	58555181	-	1	NA	NA	NA	55796	NM_022317	114304	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.015000	0.432836	
mm_145172.1	chr18	46921747	46921947	+	1	NA	NA	NA	32	NM_001033446	381142	Mm.329423	NM_001033446	ENSMUSG00000073568	Arl14epl	Gm949	ADP-ribosylation factor-like 14 effector protein-like	protein-coding	0.025000	0.522388	
mm_34445.1	chr4	148000537	148000737	+	1	NA	NA	NA	-85	NM_008725	230899	Mm.482123	NM_008725	ENSMUSG00000041616	Nppa	ANP|Anf|Pnd	natriuretic peptide type A	protein-coding	0.025000	0.562189	-33(AACTTTAAAAGG,-,0.00),-32(ACTTTAAAAGGG,+,0.00),-31(CTTTAAAAGGGC,+,0.00),73(GGCTATAAAAAC,-,0.00)
mm_72568.1	chr8	84127420	84127620	+	1	NA	NA	NA	1531	NM_001013384	244550	Mm.334654	NM_001013384	ENSMUSG00000012889	Podnl1	5832418A03Rik|Gm506	podocan-like 1	protein-coding	0.010000	0.572139	
mm_91094.1	chr10	19062048	19062248	-	1	NA	NA	NA	-46738	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.020000	0.487562	
mm_67308.1	chr7	79387946	79388146	-	1	NA	NA	NA	-1019	NM_001173483	19771	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	0.010000	0.522388	
mm_145235.1	chr18	50155419	50155619	+	1	NA	NA	NA	27318	NM_008292	15488	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.000000	0.338308	
mm_69501.1	chr7	134231987	134232187	-	1	NA	NA	NA	-6990	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.020000	0.532338	
mm_40519.1	chr5	57859124	57859324	+	1	NA	NA	NA	141143	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.010000	0.353234	
mm_12245.1	chr2	68870288	68870488	+	1	NA	NA	NA	8947	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.010000	0.492537	
mm_142158.1	chr17	36084144	36084344	-	1	NA	NA	NA	5	NM_008199	14963	Mm.477808	NM_008199	ENSMUSG00000073406	H2-Bl	H2-B1|H2-Bl-like	histocompatibility 2, blastocyst	protein-coding	0.055000	0.601990	
mm_157022.1	chrX	7765704	7765904	-	1	NA	NA	NA	1763	NM_001271491	209446	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	0.040000	0.562189	
mm_83020.1	chr9	36798599	36798799	-	1	NA	NA	NA	-1306	NM_001199494	13663	Mm.4337	NM_007915	ENSMUSG00000062762	Ei24	AA536736|AI115355|PIG8	etoposide induced 2.4 mRNA	protein-coding	0.010000	0.472637	-32(GCCTATATAAAG,-,0.00)
mm_19039.1	chr2	76977098	76977298	-	1	NA	NA	NA	5349	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.050000	0.552239	
mm_85643.1	chr9	107655572	107655772	-	1	NA	NA	NA	11727	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.030000	0.542289	
mm_154710.1	chrX	8892263	8892463	+	1	NA	NA	NA	10	NR_045448	102941	Mm.41588	NM_175327	ENSMUSG00000052364	B630019K06Rik	AI843180	novel protein similar to F-box and leucine-rich repeat protein 17 (Fbxl17)	pseudo	0.080000	0.736318	
mm_78078.1	chr9	15709661	15709861	+	1	NA	NA	NA	-8	NM_172289	234967	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.145000	0.781095	
mm_146903.1	chr18	31316807	31317007	-	1	NA	NA	NA	221	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding	0.050000	0.567164	
mm_81781.1	chr9	114688772	114688972	+	1	NA	NA	NA	41	NM_146229	235661	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	0.130000	0.686567	
mm_82941.1	chr9	35305269	35305469	-	1	NA	NA	NA	24264	NR_040715	71133	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.020000	0.358209	
mm_33895.1	chr4	136206292	136206492	+	1	NA	NA	NA	27	NM_001008232	230837	Mm.77788	NM_001008232	ENSMUSG00000036995	Asap3	9430088F20Rik|Ddefl1|Gm140|UPLC1	ArfGAP with SH3 domain, ankyrin repeat and PH domain 3	protein-coding	0.075000	0.671642	
mm_150897.1	chr19	45527280	45527480	+	1	NA	NA	NA	33184	NM_001330506	56626	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0.030000	0.482587	
mm_71232.1	chr8	40906174	40906374	+	1	NA	NA	NA	-19959	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.000000	0.363184	-6(TTTTTTAAACCC,+,0.00),41(CTCCTTTAAGGG,-,0.00),42(TCCTTTAAGGGC,+,0.00),43(CCTTTAAGGGCT,+,0.00)
mm_1802.1	chr1	80445830	80446030	+	1	NA	NA	NA	-2	NR_040460	72208	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	Jr3	RIKEN cDNA 1700016L21 gene	ncRNA	0.015000	0.447761	
mm_141459.1	chr17	30571043	30571243	-	1	NA	NA	NA	5144	NM_172618	224671	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0.010000	0.522388	
mm_150345.1	chr19	34640785	34640985	+	1	NA	NA	NA	-4	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.000000	0.482587	-30(CCCTTTAAAAAA,-,0.00)
mm_107.1	chr1	9601110	9601310	+	1	NA	NA	NA	-57	NM_178399	76982	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	0.035000	0.452736	
mm_50993.1	chr6	63256524	63256724	+	1	NA	NA	NA	-233	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.050000	0.582090	-38(TTTTAAAAAGCC,+,0.00)
mm_129952.1	chr15	85042166	85042366	-	1	NA	NA	NA	5204	NM_133750	73225	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0.000000	0.338308	
mm_61051.1	chr7	49910020	49910220	+	1	NA	NA	NA	-179	NM_001146013	104245	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	0.045000	0.492537	57(CCCTTTAAAATC,+,0.00),58(CCTTTAAAATCC,+,0.00)
mm_54699.1	chr6	39557741	39557941	-	1	NA	NA	NA	-7	NM_172477	209773	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.135000	0.761194	
mm_138253.1	chr17	34590329	34590529	+	1	NA	NA	NA	623	NM_134116	106512	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.015000	0.557214	
mm_51876.1	chr6	90559260	90559460	+	1	NA	NA	NA	8512	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.050000	0.621891	
mm_44264.1	chr5	5559433	5559633	-	1	NA	NA	NA	-32	NM_153116	207704	Mm.323984	NM_153116	ENSMUSG00000040464	Gtpbp10	4930545J22Rik|BC034507	GTP-binding protein 10 (putative)	protein-coding	0.115000	0.641791	
mm_32325.1	chr4	103851340	103851540	+	1	NA	NA	NA	468940	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA	0.000000	0.373134	
mm_78709.1	chr9	41378348	41378548	+	1	NA	NA	NA	1922	NR_131928	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.015000	0.487562	
mm_122339.1	chr14	37135092	37135292	-	1	NA	NA	NA	-53	NM_001199122	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.105000	0.686567	
mm_83854.1	chr9	54642563	54642763	-	1	NA	NA	NA	19222	NM_053178	94180	Mm.20592	NM_053178	ENSMUSG00000032281	Acsbg1	BG1|Bgm|E230019G03Rik|GR-LACS|Lpd|R75185	acyl-CoA synthetase bubblegum family member 1	protein-coding	0.010000	0.502488	29(CTCCAGAAAAGG,-,0.00)
mm_44742.1	chr5	31192983	31193183	-	1	NA	NA	NA	56	NM_001127355	13667	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	0.080000	0.671642	
mm_152453.1	chr19	10841613	10841813	-	1	NA	NA	NA	-831	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.020000	0.527363	-81(ATGTTTAAAGGG,-,0.00)
mm_151589.1	chr19	3282903	3283103	-	1	NA	NA	NA	7	NM_009212	20589	Mm.3179	NM_009212	ENSMUSG00000024831	Ighmbp2	AEP|Catf1|RIPE3b1|Smbp-2|Smbp2|Smubp2|nmd|sma	immunoglobulin mu binding protein 2	protein-coding	0.075000	0.621891	
mm_115908.1	chr13	23445826	23446026	-	1	NA	NA	NA	-14909	NR_015492	320842	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0.095000	0.641791	
mm_112593.1	chr13	13954600	13954800	+	1	NA	NA	NA	26	NM_178640	97884	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0.140000	0.726368	
mm_119836.1	chr14	54426816	54427016	+	1	NA	NA	NA	7	NM_026851	68836	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	0.080000	0.646766	
mm_20109.1	chr2	121140253	121140453	-	1	NA	NA	NA	-75	NM_001290811	75894	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	0.135000	0.671642	
mm_40603.1	chr5	64360287	64360487	+	1	NA	NA	NA	107555	NR_040681	69999	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.000000	0.477612	
mm_96250.1	chr11	62575850	62576050	+	1	NA	NA	NA	1464	NM_011706	22368	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0.065000	0.606965	
mm_3311.1	chr1	137901085	137901285	+	1	NA	NA	NA	-65270	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.015000	0.373134	
mm_30334.1	chr3	151732162	151732362	-	1	NA	NA	NA	17697	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.010000	0.417910	
mm_109399.1	chr12	109948743	109948943	+	1	NA	NA	NA	200965	NR_037233	100499517		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	0.030000	0.621891	
mm_79786.1	chr9	63281243	63281443	+	1	NA	NA	NA	96509	NM_011840	23938	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	0.010000	0.412935	
mm_168287.1	chr11	100859475	100859675	+	1	NA	NA	NA	224	NM_011488	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.020000	0.552239	
mm_85695.1	chr9	108080190	108080390	-	1	NA	NA	NA	-146	NM_008243	15235	Mm.8369	NM_008243	ENSMUSG00000032591	Mst1	D3F15S2h|D9H3F15S2|DNF15S2h|Hgfl	macrophage stimulating 1 (hepatocyte growth factor-like)	protein-coding	0.015000	0.562189	
mm_24718.1	chr3	95232203	95232403	+	1	NA	NA	NA	3360	NM_001038708	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.005000	0.512438	
mm_96421.1	chr11	67256107	67256307	+	1	NA	NA	NA	18395	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.010000	0.412935	
mm_51630.1	chr6	85587411	85587611	+	1	NA	NA	NA	-20	NM_145223	236266	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	Alstrom syndrome 1	protein-coding	0.110000	0.691542	
mm_161414.1	chr15	20666713	20666913	-	1	NA	NA	NA	-63	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.035000	0.502488	
mm_172213.1	chr6	59200035	59200235	+	1	NA	NA	NA	-8735	NM_001081145	68140	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.065000	0.666667	
mm_166436.1	chr5	137207572	137207772	-	1	NA	NA	NA	-80582	NM_009599	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.015000	0.557214	41(TCTTATAAGCAC,+,0.00)
mm_146891.1	chr18	25754230	25754430	-	1	NA	NA	NA	-347	NM_001174074	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.150000	0.786070	-33(CTATTTATAGCC,+,0.00)
mm_25811.1	chr3	127790521	127790721	+	1	NA	NA	NA	708	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.065000	0.572139	
mm_44654.1	chr5	28210294	28210494	-	1	NA	NA	NA	-226	NM_001310511	269637	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.085000	0.606965	
mm_102292.1	chr11	55409916	55410116	-	1	NA	NA	NA	10064	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.015000	0.517413	
mm_8539.1	chr1	155059467	155059667	-	1	NA	NA	NA	40069	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.015000	0.547264	-98(CTATTTATAGAA,+,0.00)
mm_112629.1	chr13	15922095	15922295	+	1	NA	NA	NA	-89656	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.378109	
mm_35441.1	chr4	40210036	40210236	-	1	NA	NA	NA	29689	NM_172689	230073	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.015000	0.358209	
mm_157914.1	chrX	78552681	78552881	-	1	NA	NA	NA	31024	NM_001164275	546336	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	0.000000	0.432836	
mm_78486.1	chr9	32699317	32699517	+	1	NA	NA	NA	3375	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.020000	0.472637	
mm_104238.1	chr11	88717991	88718191	-	1	NA	NA	NA	138	NM_054043	76626	Mm.400451	NM_054043	ENSMUSG00000069769	Msi2	1700105C15Rik|AI451722|AI563628|AW489193|Msi2h	musashi RNA-binding protein 2	protein-coding	0.115000	0.751244	
mm_115095.1	chr13	102720353	102720553	+	1	NA	NA	NA	26895	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.000000	0.472637	
mm_82084.1	chr9	123034625	123034825	+	1	NA	NA	NA	-16	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.010000	0.507463	-17(GCATATAAAAAG,-,0.00)
mm_66788.1	chr7	47091284	47091484	-	1	NA	NA	NA	-8160	NR_106023	102465639		NR_106023	ENSMUSG00000098960	Mir7056	Gm27696|mmu-mir-7056	microRNA 7056	ncRNA	0.020000	0.611940	
mm_150278.1	chr19	34251634	34251834	+	1	NA	NA	NA	3639	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.020000	0.527363	
mm_101263.1	chr11	21174514	21174714	-	1	NA	NA	NA	-64418	NM_139061	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.025000	0.507463	
mm_85323.1	chr9	101862298	101862498	-	1	NA	NA	NA	442577	NR_106163	102466241		NR_106163	ENSMUSG00000098521	Mir7243	Gm27363|mmu-mir-7243	microRNA 7243	ncRNA	0.015000	0.507463	
mm_93455.1	chr10	110149500	110149700	-	1	NA	NA	NA	-149381	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.000000	0.477612	
mm_41011.1	chr5	81021126	81021326	+	1	NA	NA	NA	-367	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.020000	0.457711	
mm_31688.1	chr4	62313968	62314168	+	1	NA	NA	NA	22521	NM_001290518	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.015000	0.482587	
mm_109471.1	chr12	111420502	111420702	+	1	NA	NA	NA	3157	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.010000	0.542289	
mm_1438.1	chr1	67211226	67211426	+	1	NA	NA	NA	88299	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.000000	0.398010	
mm_11681.1	chr2	35562648	35562848	+	1	NA	NA	NA	-4046	NR_045894	100042194	Mm.330165	NR_045894	ENSMUSG00000086555	Gm13446	OTTMUSG00000012261	predicted gene 13446	ncRNA	0.015000	0.472637	
mm_156592.1	chrX	152201871	152202071	+	1	NA	NA	NA	22962	NM_001005475	245666	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	0.005000	0.621891	
mm_148291.1	chr18	82584427	82584627	-	1	NA	NA	NA	30019	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.030000	0.562189	-72(CTCTTTAGGGGG,+,0.00)
mm_67741.1	chr7	90265352	90265552	-	1	NA	NA	NA	-20	NR_111924	75338	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.045000	0.577114	
mm_12542.1	chr2	72297833	72298033	+	1	NA	NA	NA	12232	NM_178084	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.025000	0.567164	
mm_106787.1	chr12	4769208	4769408	+	1	NA	NA	NA	13	NM_028376	382562	Mm.251575	NM_028376	ENSMUSG00000020639	Pfn4	2900024P18Rik	profilin family, member 4	protein-coding	0.065000	0.582090	
mm_139979.1	chr17	71782578	71782778	+	1	NA	NA	NA	731	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	0.175000	0.830846	
mm_141218.1	chr17	27202988	27203188	-	1	NA	NA	NA	1350	NM_146075	224640	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	0.040000	0.412935	
mm_53176.1	chr6	125349698	125349898	+	1	NA	NA	NA	75	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.045000	0.582090	
mm_131699.1	chr16	20716725	20716925	+	1	NA	NA	NA	-189	NM_009900	12724	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	0.045000	0.626866	
mm_60416.1	chr7	44476134	44476334	+	1	NA	NA	NA	5887	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.467662	
mm_34957.1	chr4	155993211	155993411	+	1	NA	NA	NA	-26	NM_001302468	20318	Mm.293517	NM_011341	ENSMUSG00000029076	Sdf4	Cab45	stromal cell derived factor 4	protein-coding	0.110000	0.651741	
mm_125140.1	chr15	30500482	30500682	+	1	NA	NA	NA	327989	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.005000	0.383085	
mm_72375.1	chr8	81342468	81342668	+	1	NA	NA	NA	6	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.115000	0.766169	
mm_143314.1	chr17	66101913	66102113	-	1	NA	NA	NA	-454	NM_028388	72900	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	0.030000	0.467662	
mm_84544.1	chr9	67321868	67322068	-	1	NA	NA	NA	-85242	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	0.020000	0.482587	
mm_41904.1	chr5	105579394	105579594	+	1	NA	NA	NA	60023	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.050000	0.497512	
mm_43778.1	chr5	142341240	142341440	+	1	NA	NA	NA	-60157	NM_199068	17425	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf	forkhead box K1	protein-coding	0.010000	0.557214	-36(CACTATAAAGGG,-,0.00)
mm_25799.1	chr3	127780549	127780749	+	1	NA	NA	NA	-122	NM_027808	71481	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	0.010000	0.398010	
mm_130021.1	chr15	88819207	88819407	-	1	NA	NA	NA	11	NM_001142357	223774	Mm.41512	NM_145477	ENSMUSG00000035845	Alg12	ECM39	asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)	protein-coding	0.100000	0.676617	
mm_69455.1	chr7	133123073	133123273	-	1	NA	NA	NA	310	NM_009980	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.125000	0.800995	
mm_2817.1	chr1	130878331	130878531	+	1	NA	NA	NA	8980	NM_053095	93672	Mm.196691	NM_053095	ENSMUSG00000026420	Il24	FISP|Mda-7|Mda7|St16	interleukin 24	protein-coding	0.080000	0.671642	
mm_49823.1	chr6	37539620	37539820	+	1	NA	NA	NA	9547	NM_145364	208665	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0.035000	0.442786	
mm_148882.1	chr19	6532392	6532592	+	1	NA	NA	NA	10578	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.045000	0.532338	-61(TTTTTTAAGGGG,+,0.00)
mm_46048.1	chr5	92075553	92075753	-	1	NA	NA	NA	7264	NM_001080797	23881	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.010000	0.437811	
mm_144314.1	chr18	12643388	12643588	+	1	NA	NA	NA	-45	NM_028341	72747	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.050000	0.686567	
mm_12388.1	chr2	69870592	69870792	+	1	NA	NA	NA	9130	NM_009278	20823	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	0.005000	0.388060	
mm_1892.1	chr1	85688143	85688343	+	1	NA	NA	NA	38255	NM_001313714	20684	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.000000	0.283582	
mm_4054.1	chr1	165809632	165809832	+	1	NA	NA	NA	21051	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.040000	0.402985	
mm_72534.1	chr8	83995635	83995835	+	1	NA	NA	NA	-1937	NM_001081415	666704	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.020000	0.517413	
mm_67356.1	chr7	79836303	79836503	-	1	NA	NA	NA	5949	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.030000	0.562189	
mm_20716.1	chr2	134644034	134644234	-	1	NA	NA	NA	-13	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding	0.075000	0.701493	
mm_122433.1	chr14	45173498	45173698	-	1	NA	NA	NA	45827	NM_172597	70561	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.010000	0.467662	-30(GACCATAAAAAG,-,0.00),-28(CCATAAAAAGGG,+,0.00)
mm_67822.1	chr7	98236419	98236619	-	1	NA	NA	NA	-37044	NM_001081167	272411	Mm.98333	NM_001081167	ENSMUSG00000074004	B3gnt6	BC039789|Core-3|Core3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	protein-coding	0.000000	0.338308	
mm_56330.1	chr6	92565521	92565721	-	1	NA	NA	NA	1745	NM_001134461	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.020000	0.522388	
mm_15262.1	chr2	155019053	155019253	+	1	NA	NA	NA	5583	NM_015770	50518	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	0.050000	0.552239	
mm_136311.1	chr16	91688642	91688842	-	1	NA	NA	NA	-14	NM_021720	60364	Mm.328698	NM_021720	ENSMUSG00000022960	Donson	1110025J21Rik|AI845729|ORF60	downstream neighbor of SON	protein-coding	0.130000	0.766169	
mm_63956.1	chr7	139914522	139914722	+	1	NA	NA	NA	19926	NM_177261	76484	Mm.44442	NM_177261	ENSMUSG00000066129	Kndc1	2410012C07Rik|B830014K08Rik|VKIND|very-kind	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding	0.030000	0.567164	
mm_107582.1	chr12	44525640	44525840	+	1	NA	NA	NA	196855	NM_001146031	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.020000	0.507463	
mm_1565.1	chr1	74155600	74155800	+	1	NA	NA	NA	1706	NM_009909	12765	Mm.234466	NM_009909	ENSMUSG00000026180	Cxcr2	CD128|CDw128|Cmkar2|Gpcr16|IL-8Rh|IL-8rb|IL8RA|Il8rb|mIL-8RH	chemokine (C-X-C motif) receptor 2	protein-coding	0.005000	0.527363	
mm_89181.1	chr10	86345759	86345959	+	1	NA	NA	NA	45447	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.040000	0.597015	
mm_97.1	chr1	8936311	8936511	+	1	NA	NA	NA	363466	NM_001290390	71096	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	0.015000	0.512438	
mm_81594.1	chr9	110510146	110510346	+	1	NA	NA	NA	-22351	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.020000	0.467662	
mm_84991.1	chr9	86587516	86587716	-	1	NA	NA	NA	15563	NM_027100	69519	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	0.020000	0.522388	
mm_1575.1	chr1	74267728	74267928	+	1	NA	NA	NA	-10772	NM_174985	227289	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.030000	0.497512	
mm_48583.1	chr5	143613328	143613528	-	1	NA	NA	NA	-9019	NM_011182	19159	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0.000000	0.542289	
mm_105987.1	chr11	115627633	115627833	-	1	NA	NA	NA	562	NM_001252394	67283	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.045000	0.606965	
mm_119375.1	chr14	41123454	41123654	+	1	NA	NA	NA	-8234	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.005000	0.502488	
mm_37388.1	chr4	121016894	121017094	-	1	NA	NA	NA	253	NM_133716	69780	Mm.271819	NM_133716	ENSMUSG00000032870	Smap2	1810031K02Rik|AA408614|Smap1l	small ArfGAP 2	protein-coding	0.095000	0.776119	
mm_45564.1	chr5	73212486	73212686	-	1	NA	NA	NA	44032	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.025000	0.432836	
mm_16110.1	chr2	169641034	169641234	+	1	NA	NA	NA	7488	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.030000	0.542289	
mm_56432.1	chr6	97352219	97352419	-	1	NA	NA	NA	-99539	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.005000	0.432836	
mm_162750.1	chr10	59136883	59137083	+	1	NA	NA	NA	84864	NM_001024911	103080	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	0.015000	0.437811	
mm_103697.1	chr11	79516257	79516457	-	1	NA	NA	NA	7405	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.005000	0.452736	
mm_21328.1	chr2	157101229	157101429	-	1	NA	NA	NA	14274	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.020000	0.512438	
mm_34949.1	chr4	155943943	155944143	+	1	NA	NA	NA	-115	NM_001284312	140499	Mm.371673	NM_021402	ENSMUSG00000023286	Ube2j2	1200007B18Rik|2400008G19Rik|5730472G04Rik|AL022923|NCUBE-2|Ubc6|Ubc6p	ubiquitin-conjugating enzyme E2J 2	protein-coding	0.165000	0.776119	
mm_45729.1	chr5	86197788	86197988	-	1	NA	NA	NA	13	NM_001310653	14715	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	0.025000	0.427861	
mm_29837.1	chr3	129822329	129822529	-	1	NA	NA	NA	76	NM_009102	20132	Mm.278758	NM_009102	ENSMUSG00000028012	Rrh	-	retinal pigment epithelium derived rhodopsin homolog	protein-coding	0.035000	0.507463	
mm_122007.1	chr14	26970477	26970677	-	1	NA	NA	NA	-26	NM_145221	72993	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	0.125000	0.766169	
mm_46045.1	chr5	92042925	92043125	-	1	NA	NA	NA	17	NM_177270	53886	Mm.44963	NM_016912	ENSMUSG00000029403	Cdkl2	5330436L21Rik|AI505225|KKIAMRE|Kkm	cyclin-dependent kinase-like 2 (CDC2-related kinase)	protein-coding	0.115000	0.671642	
mm_62555.1	chr7	102483014	102483214	+	1	NA	NA	NA	5193	NM_020289	257926	Mm.103733	NM_020289	ENSMUSG00000043925	Olfr544	MOR42-3|Ors6	olfactory receptor 544	protein-coding	0.005000	0.557214	
mm_1039.1	chr1	58795309	58795509	+	1	NA	NA	NA	35	NM_009812	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.035000	0.542289	-2(GCTCTTAAGGCG,+,0.00)
mm_104002.1	chr11	84880174	84880374	-	1	NA	NA	NA	11	NM_001077636	70325	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	0.135000	0.751244	
mm_72776.1	chr8	86615300	86615500	+	1	NA	NA	NA	-8643	NM_025827	66887	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding	0.015000	0.388060	-34(GCTTTTAAAAAG,+,0.00),-34(GCTTTTAAAAAG,-,0.00)
mm_67178.1	chr7	73612573	73612773	-	1	NA	NA	NA	-54278	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.015000	0.437811	
mm_20538.1	chr2	131055728	131055928	-	1	NA	NA	NA	7986	NR_136922	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.030000	0.582090	
mm_1738.1	chr1	75439133	75439333	+	1	NA	NA	NA	3290	NM_133708	69080	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	0.030000	0.641791	
mm_146748.1	chr18	16640490	16640690	-	1	NA	NA	NA	168656	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.030000	0.487562	
mm_135020.1	chr16	32487784	32487984	-	1	NA	NA	NA	-5	NM_145932	106407	Mm.476915	NM_145932	ENSMUSG00000035699	Slc51a	AV001382|AW261577|D630035O19Rik|OSTalpha|Osta	solute carrier family 51, alpha subunit	protein-coding	0.020000	0.487562	
mm_153134.1	chr19	34243379	34243579	-	1	NA	NA	NA	11894	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.015000	0.487562	
mm_5286.1	chr1	20804716	20804916	-	1	NA	NA	NA	15397	NM_008563	17215	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|p1.m	minichromosome maintenance complex component 3	protein-coding	0.040000	0.577114	
mm_92262.1	chr10	71069738	71069938	-	1	NA	NA	NA	89852	NM_031397	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	BicC family RNA binding protein 1	protein-coding	0.010000	0.452736	
mm_113794.1	chr13	46340136	46340336	+	1	NA	NA	NA	66515	NM_001005422	380842	Mm.188108	NM_001005422	ENSMUSG00000063529	Stmnd1	Gm1574	stathmin domain containing 1	protein-coding	0.015000	0.547264	
mm_35317.1	chr4	25792803	25793003	-	1	NA	NA	NA	7100	NM_010243	14348	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.015000	0.388060	
mm_134525.1	chr16	19236751	19236951	-	1	NA	NA	NA	49890	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.010000	0.592040	
mm_24293.1	chr3	89271808	89272008	+	1	NA	NA	NA	-1338	NM_009057	19729	Mm.17958	NM_009057	ENSMUSG00000027953	Slc50a1	MmSWEET1|Rag1ap1|Rga	solute carrier family 50 (sugar transporter), member 1	protein-coding	0.015000	0.542289	
mm_3235.1	chr1	135850582	135850782	+	1	NA	NA	NA	9821	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.010000	0.557214	
mm_150656.1	chr19	41933810	41934010	+	1	NA	NA	NA	438	NM_023740	74168	Mm.20387	NM_023740	ENSMUSG00000025157	Zdhhc16	1500015N03Rik|Aph2	zinc finger, DHHC domain containing 16	protein-coding	0.020000	0.427861	
mm_102943.1	chr11	69603450	69603650	-	1	NA	NA	NA	2410	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.020000	0.542289	
mm_31154.1	chr4	43416062	43416262	+	1	NA	NA	NA	9660	NM_199057	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.045000	0.621891	
mm_922.1	chr1	55131178	55131378	+	1	NA	NA	NA	33	NM_025283	19070	Mm.291037	NM_025283	ENSMUSG00000025979	Mob4	2610109B12Rik|Mobkl3|Phocn|Prei3	MOB family member 4, phocein	protein-coding	0.110000	0.736318	
mm_76776.1	chr8	95888415	95888615	-	1	NA	NA	NA	-150	NM_010325	14719	Mm.230169	NM_010325	ENSMUSG00000031672	Got2	AL022787|FABP-pm|Got-2|Kyat4|mAspAT	glutamatic-oxaloacetic transaminase 2, mitochondrial	protein-coding	0.080000	0.592040	
mm_60988.1	chr7	49160620	49160820	+	1	NA	NA	NA	-85469	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.015000	0.547264	
mm_24109.1	chr3	88142466	88142666	+	1	NA	NA	NA	194	NM_001310593	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.175000	0.805970	
mm_96154.1	chr11	61485345	61485545	+	1	NA	NA	NA	1	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.010000	0.601990	
mm_88024.1	chr10	67215204	67215404	+	1	NA	NA	NA	29554	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.020000	0.402985	
mm_63832.1	chr7	135300839	135301039	+	1	NA	NA	NA	32320	NM_001163611	100043254	Mm.192092	NM_001163611	ENSMUSG00000073804	Nps	ENSMUSG00000073804	neuropeptide S	protein-coding	0.015000	0.517413	
mm_47679.1	chr5	128819968	128820168	-	1	NA	NA	NA	83822	NM_021311	57749	Mm.272720	NM_021311	ENSMUSG00000029423	Piwil1	MIWI	piwi-like RNA-mediated gene silencing 1	protein-coding	0.030000	0.592040	
mm_4889.1	chr1	188654588	188654788	+	1	NA	NA	NA	353152	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.050000	0.497512	
mm_75751.1	chr8	69901567	69901767	-	1	NA	NA	NA	-517	NM_032004	83984	Mm.432504	NM_032004	ENSMUSG00000047654	Tssk6	Sstk|TSK-6|TSSK-6	testis-specific serine kinase 6	protein-coding	0.090000	0.616915	
mm_100674.1	chr11	3408984	3409184	-	1	NA	NA	NA	154	NM_010718	16886	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.095000	0.676617	
mm_87258.1	chr10	41519725	41519925	+	1	NA	NA	NA	325	NM_016898	53599	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.140000	0.726368	
mm_127867.1	chr15	8397920	8398120	-	1	NA	NA	NA	46443	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.005000	0.248756	
mm_102178.1	chr11	54028043	54028243	-	1	NA	NA	NA	-39	NM_001330304	30805	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	0.090000	0.681592	
mm_67974.1	chr7	100656763	100656963	-	1	NA	NA	NA	102	NM_001163187	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.020000	0.577114	
mm_93659.1	chr10	117690408	117690608	-	1	NA	NA	NA	20250	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.040000	0.517413	
mm_132774.1	chr16	44773185	44773385	+	1	NA	NA	NA	7549	NM_021325	57781	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.000000	0.497512	
mm_98428.1	chr11	94653943	94654143	+	1	NA	NA	NA	252	NM_053161	94064	Mm.34951	NM_053161	ENSMUSG00000024414	Mrpl27	A630055F16Rik|D11Moh47|D18Ertd643e	mitochondrial ribosomal protein L27	protein-coding	0.045000	0.497512	
mm_164697.1	chr17	48605300	48605500	+	1	NA	NA	NA	150499	NM_152823	76589	Mm.311629	NM_152823	ENSMUSG00000043592	Unc5cl	2510009H09Rik|BB155270|Zud	unc-5 family C-terminal like	protein-coding	0.030000	0.457711	
mm_131763.1	chr16	22891943	22892143	+	1	NA	NA	NA	28	NM_001276449	11625	Mm.197554	NM_013465	ENSMUSG00000022868	Ahsg	-	alpha-2-HS-glycoprotein	protein-coding	0.030000	0.507463	
mm_155399.1	chrX	72997152	72997352	+	1	NA	NA	NA	5173	NR_035517	100316779		NR_035517	ENSMUSG00000089357	Mir2137	mmu-mir-2137	microRNA 2137	ncRNA	0.010000	0.512438	
mm_98581.1	chr11	95716334	95716534	+	1	NA	NA	NA	-3680	NR_045780	432396	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	0.015000	0.507463	
mm_48984.1	chr6	4755485	4755685	+	1	NA	NA	NA	8279	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.462687	
mm_27785.1	chr3	75143636	75143836	-	1	NA	NA	NA	36	NM_001310529	213234	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding	0.005000	0.437811	
mm_92957.1	chr10	85541510	85541710	-	1	NA	NA	NA	-56801	NM_001017525	74007	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.005000	0.497512	-35(CACCATAAAAGG,-,0.00),-33(CCATAAAAGGGG,+,0.00)
mm_56695.1	chr6	114474896	114475096	-	1	NA	NA	NA	16474	NM_001317124	15465	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.015000	0.557214	
mm_6131.1	chr1	64617096	64617296	-	1	NA	NA	NA	-28	NM_025964	67099	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0.085000	0.661692	-42(AGCCTTTTAAGG,-,0.00),-41(GCCTTTTAAGGA,-,0.00),-40(CCTTTTAAGGAG,+,0.00)
mm_90531.1	chr10	128086199	128086399	+	1	NA	NA	NA	1013	NR_030442	751518		NR_030442	ENSMUSG00000093245	Mir677	Mirn677|mir-677|mmu-mir-677	microRNA 677	ncRNA	0.010000	0.502488	
mm_72727.1	chr8	85071653	85071853	+	1	NA	NA	NA	-4	NM_001039514	330817	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	0.100000	0.661692	
mm_153135.1	chr19	34244856	34245056	-	1	NA	NA	NA	10417	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.035000	0.552239	
mm_6181.1	chr1	65103061	65103261	-	1	NA	NA	NA	202	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.045000	0.572139	
mm_6709.1	chr1	82287143	82287343	-	1	NA	NA	NA	4196	NM_010570	16367	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.025000	0.597015	
mm_145750.1	chr18	64519849	64520049	+	1	NA	NA	NA	-3392	NM_001142950	70223	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0.000000	0.492537	
mm_157499.1	chrX	48513312	48513512	-	1	NA	NA	NA	151	NM_001290364	26926	Mm.240434	NM_012019	ENSMUSG00000036932	Aifm1	AIF|AIFsh2|Hq|Pdcd8	apoptosis-inducing factor, mitochondrion-associated 1	protein-coding	0.095000	0.646766	
mm_168708.1	chr11	99932320	99932520	+	1	NA	NA	NA	-3871	NM_001025244	432602	Mm.246878	NM_001025244	ENSMUSG00000051481	Krtap31-2	OTTMUSG00000002177	keratin associated protein 31-2	protein-coding	0.025000	0.457711	
mm_154777.1	chrX	12840324	12840524	+	1	NA	NA	NA	78146	NR_045852	552913	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	OTTMUSG00000017535	predicted gene 14634	ncRNA	0.030000	0.606965	
mm_115951.1	chr13	23746409	23746609	-	1	NA	NA	NA	-225	NM_175664	319178	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding	0.040000	0.482587	
mm_136966.1	chr17	15706456	15706656	+	1	NA	NA	NA	1589	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.030000	0.358209	
mm_87742.1	chr10	60266812	60267012	+	1	NA	NA	NA	-10716	NM_001146123	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.015000	0.522388	
mm_105137.1	chr11	101459263	101459463	-	1	NA	NA	NA	6836	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.010000	0.582090	
mm_152073.1	chr19	6840475	6840675	-	1	NA	NA	NA	52	NM_019924	56613	Mm.20914	NM_019924	ENSMUSG00000024952	Rps6ka4	1110069D02Rik|90kDa|AI848992|Msk2|mMSK2	ribosomal protein S6 kinase, polypeptide 4	protein-coding	0.140000	0.771144	
mm_66322.1	chr7	41682899	41683099	-	1	NA	NA	NA	14985	NR_004441	75835	Mm.159597	NM_029460	ENSMUSG00000074164	Vmn2r-ps54	1700108E19Rik|4930562N12Rik|Casr-rs5|ENSMUSG00000078527|Gm10948|Gprc2a-rs5	vomeronasal 2, receptor, pseudogene 54	pseudo	0.025000	0.512438	
mm_108095.1	chr12	74346114	74346314	+	1	NA	NA	NA	48740	NM_198866	386753	Mm.341686	NM_198866	ENSMUSG00000029878	Dbpht2	Spot2	DNA binding protein with his-thr domain	protein-coding	0.025000	0.427861	
mm_111446.1	chr12	98259193	98259393	-	1	NA	NA	NA	166	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.105000	0.651741	
mm_60289.1	chr7	43995748	43995948	+	1	NA	NA	NA	-29	NM_010640	16613	Mm.443378	NM_010640	ENSMUSG00000044485	Klk1b11	Klk11|mGK-11	kallikrein 1-related peptidase b11	protein-coding	0.000000	0.552239	
mm_12038.1	chr2	58769537	58769737	+	1	NA	NA	NA	14453	NM_029692	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.005000	0.482587	
mm_15294.1	chr2	155382192	155382392	+	1	NA	NA	NA	436	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.060000	0.606965	
mm_16614.1	chr2	5379248	5379448	-	1	NA	NA	NA	-42	NR_030601	100124465		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.055000	0.482587	
mm_44541.1	chr5	24540845	24541045	-	1	NA	NA	NA	33	NM_001310476	117590	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	0.010000	0.562189	
mm_103106.1	chr11	69980124	69980324	-	1	NA	NA	NA	106	NM_001253700	54351	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.060000	0.611940	
mm_76820.1	chr8	104549901	104550101	-	1	NA	NA	NA	8692	NM_001301165	12354	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	0.020000	0.587065	
mm_6684.1	chr1	80631358	80631558	-	1	NA	NA	NA	33894	NM_001285927	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.000000	0.467662	
mm_171074.1	chr3	117868795	117868995	-	1	NA	NA	NA	41	NM_001190156	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.140000	0.800995	
mm_85478.1	chr9	105960551	105960751	-	1	NA	NA	NA	-8	NM_001167923	665033	Mm.39826	NM_001167923	ENSMUSG00000091345	Col6a5	Col29a1|EG665033|Gm7455	collagen, type VI, alpha 5	protein-coding	0.040000	0.656716	
mm_143456.1	chr17	70990428	70990628	-	1	NA	NA	NA	-12	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.125000	0.746269	
mm_102330.1	chr11	57828919	57829119	-	1	NA	NA	NA	3128	NM_008213	15110	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed transcript 1	protein-coding	0.025000	0.537313	
mm_144132.1	chr18	4921576	4921776	+	1	NA	NA	NA	109190	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA	0.045000	0.651741	
mm_115317.1	chr13	112367777	112367977	+	1	NA	NA	NA	79359	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.020000	0.512438	54(GTCTTTAAGAAG,-,0.00)
mm_52369.1	chr6	113046281	113046481	+	1	NA	NA	NA	54	NM_008188	14911	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0.115000	0.711443	
mm_123118.1	chr14	56100618	56100818	-	1	NA	NA	NA	1856	NM_007800	13035	Mm.4858	NM_007800	ENSMUSG00000040314	Ctsg	CatG|VSP	cathepsin G	protein-coding	0.025000	0.592040	
mm_152309.1	chr19	9744023	9744223	-	1	NA	NA	NA	155410	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.015000	0.452736	
mm_36445.1	chr4	82422432	82422632	-	1	NA	NA	NA	83247	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.000000	0.318408	62(CACCTTTAAAAG,-,0.00),63(ACCTTTAAAAGA,-,0.00),64(CCTTTAAAAGAA,+,0.00)
mm_151942.1	chr19	5800817	5801017	-	1	NA	NA	NA	1755	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.020000	0.442786	
mm_60021.1	chr7	30789606	30789806	+	1	NA	NA	NA	1801	NM_001033131	64661	Mm.268157	NM_001033131	ENSMUSG00000074199	Krtdap	Kdap|sk221	keratinocyte differentiation associated protein	protein-coding	0.005000	0.422886	29(ACTTTAAGAGGC,+,0.00)
mm_46293.1	chr5	100415997	100416197	-	1	NA	NA	NA	137	NM_026969	69162	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	0.150000	0.751244	
mm_10216.1	chr2	5895366	5895566	+	1	NA	NA	NA	-113	NM_021305	57743	Mm.21435	NM_021305	ENSMUSG00000025816	Sec61a2	-	Sec61, alpha subunit 2 (S. cerevisiae)	protein-coding	0.095000	0.676617	
mm_148906.1	chr19	6942500	6942700	+	1	NA	NA	NA	38	NM_001285453	12015	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.055000	0.587065	
mm_23070.1	chr3	36150988	36151188	+	1	NA	NA	NA	8	NM_001101478	241944	Mm.260056	NM_001101478	ENSMUSG00000033883	D3Ertd254e	-	DNA segment, Chr 3, ERATO Doi 254, expressed	protein-coding	0.065000	0.597015	
mm_134996.1	chr16	32164380	32164580	-	1	NA	NA	NA	996	NM_146069	224109	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.040000	0.557214	
mm_139826.1	chr17	68314502	68314702	+	1	NA	NA	NA	40805	NM_177278	320858	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	l(3)mbt-like 4 (Drosophila)	protein-coding	0.020000	0.507463	
mm_46087.1	chr5	92346894	92347094	-	1	NA	NA	NA	1895	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.020000	0.477612	
mm_29745.1	chr3	126942721	126942921	-	1	NA	NA	NA	565	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.025000	0.482587	
mm_151028.1	chr19	47014382	47014582	+	1	NA	NA	NA	-216	NM_146100	226180	Mm.276251	NM_146100	ENSMUSG00000034336	Ina	AV028420|NF-66|NF66	internexin neuronal intermediate filament protein, alpha	protein-coding	0.075000	0.641791	
mm_114516.1	chr13	73260380	73260580	+	1	NA	NA	NA	-17	NM_018885	50916	Mm.103784	NM_018885	ENSMUSG00000021604	Irx4	-	Iroquois related homeobox 4 (Drosophila)	protein-coding	0.130000	0.706468	
mm_109744.1	chr12	117533831	117534031	+	1	NA	NA	NA	17452	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.160000	0.800995	
mm_153607.1	chr19	43940084	43940284	-	1	NA	NA	NA	14	NM_028029	71972	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.160000	0.800995	
mm_136759.1	chr17	8800572	8800772	+	1	NA	NA	NA	-1073	NM_011866	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.045000	0.626866	
mm_6443.1	chr1	73998447	73998647	-	1	NA	NA	NA	125900	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.015000	0.532338	
mm_132037.1	chr16	27422677	27422877	+	1	NA	NA	NA	33821	NM_001289436	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.005000	0.373134	
mm_26869.1	chr3	16257154	16257354	-	1	NA	NA	NA	74071	NM_001145919	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.025000	0.422886	
mm_79276.1	chr9	50774123	50774323	+	1	NA	NA	NA	-1002	NM_133981	102580	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	0.010000	0.407960	
mm_2768.1	chr1	130716991	130717191	+	1	NA	NA	NA	-236	NM_178691	226418	Mm.106553	NM_178691	ENSMUSG00000046404	Yod1	6330564D18Rik|9930028C20Rik|Hshin7	YOD1 deubiquitinase	protein-coding	0.075000	0.582090	
mm_66104.1	chr7	31040136	31040336	-	1	NA	NA	NA	81	NR_106017	102465635		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.025000	0.537313	
mm_3663.1	chr1	153425071	153425271	+	1	NA	NA	NA	-38	NM_001033162	71836	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	0.120000	0.721393	
mm_161969.1	chr19	10634241	10634441	+	1	NA	NA	NA	108	NM_027913	71768	Mm.169261	NM_027913	ENSMUSG00000043789	Vwce	1300015B04Rik	von Willebrand factor C and EGF domains	protein-coding	0.055000	0.661692	
mm_116851.1	chr13	54759337	54759537	-	1	NA	NA	NA	7003	NM_033610	104069	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	0.025000	0.616915	
mm_56451.1	chr6	97617535	97617735	-	1	NA	NA	NA	22	NM_145148	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.095000	0.716418	
mm_97740.1	chr11	80456868	80457068	+	1	NA	NA	NA	-20078	NM_009871	12569	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0.000000	0.373134	9(GGCTATTAGAAG,-,0.00)
mm_95012.1	chr11	31934957	31935157	+	1	NA	NA	NA	-30576	NM_026262	67592	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	0.000000	0.243781	
mm_66202.1	chr7	34233904	34234104	-	1	NA	NA	NA	-3668	NM_008155	14751	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	0.060000	0.631841	
mm_61942.1	chr7	90182856	90183056	+	1	NA	NA	NA	52724	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.293532	
mm_40472.1	chr5	53998380	53998580	+	1	NA	NA	NA	-43	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.150000	0.791045	
mm_546.1	chr1	38018938	38019138	+	1	NA	NA	NA	21028	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.015000	0.388060	
mm_113278.1	chr13	30003296	30003496	+	1	NA	NA	NA	-17333	NM_010093	13557	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.030000	0.552239	
mm_116349.1	chr13	38960387	38960587	-	1	NA	NA	NA	50	NM_001170430	108652	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	0.150000	0.761194	
mm_46721.1	chr5	110682060	110682260	-	1	NA	NA	NA	-16019	NR_105993	102466216		NR_105993	ENSMUSG00000099284	Mir7026	Gm27988|mmu-mir-7026	microRNA 7026	ncRNA	0.015000	0.383085	
mm_115685.1	chr13	13558828	13559028	-	1	NA	NA	NA	-31481	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.020000	0.462687	
mm_74096.1	chr8	122574708	122574908	+	1	NA	NA	NA	2099	NM_009698	11821	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	0.025000	0.567164	
mm_15522.1	chr2	158376175	158376375	+	1	NA	NA	NA	637	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.035000	0.587065	
mm_112957.1	chr13	21179858	21180058	+	1	NA	NA	NA	27	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.055000	0.601990	-33(TACTTTTAAAGG,-,0.00),-32(ACTTTTAAAGGA,+,0.00),-31(CTTTTAAAGGAG,+,0.00)
mm_89820.1	chr10	105238040	105238240	+	1	NA	NA	NA	336339	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.015000	0.457711	
mm_158635.1	chrX	155128325	155128525	-	1	NA	NA	NA	19424	NM_001081671	73347	Mm.63848	NM_001081671	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	0.015000	0.442786	
mm_131450.1	chr16	16870613	16870813	+	1	NA	NA	NA	-23	NM_001326576	21976	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding	0.055000	0.616915	
mm_150494.1	chr19	39011683	39011883	+	1	NA	NA	NA	4764	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.020000	0.487562	
mm_152218.1	chr19	8262526	8262726	-	1	NA	NA	NA	-43726	NM_001347426	236293	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	0.005000	0.457711	
mm_8646.1	chr1	156430754	156430954	-	1	NA	NA	NA	-9939	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.005000	0.432836	
mm_109497.1	chr12	111449792	111449992	+	1	NA	NA	NA	7231	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.010000	0.547264	27(CCTCTTAAAGTC,+,0.00)
mm_85070.1	chr9	91130383	91130583	-	1	NA	NA	NA	235316	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.015000	0.432836	
mm_166018.1	chr4	122008452	122008652	-	1	NA	NA	NA	-386427	NM_001099309	666927	Mm.465133	NM_001099309	ENSMUSG00000078575	Gm12887	OTTMUSG00000008910	predicted gene 12887	protein-coding	0.060000	0.631841	
mm_93129.1	chr10	92073304	92073504	-	1	NA	NA	NA	-1219	NR_029812	723955		NR_029812	ENSMUSG00000065524	Mir135a-2	Mirn135a-2|mir-135a-2	microRNA 135a-2	ncRNA	0.005000	0.383085	55(CTTTTTAAGTGC,+,0.00)
mm_90991.1	chr10	13965569	13965769	-	1	NA	NA	NA	-710	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.090000	0.691542	
mm_134765.1	chr16	23500389	23500589	-	1	NA	NA	NA	20101	NM_008555	17174	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0.000000	0.378109	
mm_89338.1	chr10	87934578	87934778	+	1	NA	NA	NA	-31993	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.000000	0.338308	
mm_63802.1	chr7	133001521	133001721	+	1	NA	NA	NA	13626	NM_001170744	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.010000	0.582090	
mm_109660.1	chr12	113014452	113014652	+	1	NA	NA	NA	44	NM_001291444	217893	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.175000	0.830846	
mm_150702.1	chr19	42255797	42255997	+	1	NA	NA	NA	158	NM_027694	71146	Mm.329851	NM_027694	ENSMUSG00000042532	Golga7b	4933417O08Rik|AI839934	golgi autoantigen, golgin subfamily a, 7B	protein-coding	0.110000	0.731343	
mm_130125.1	chr15	89841709	89841909	-	1	NA	NA	NA	51	NM_018803	54526	Mm.261601	NM_018803	ENSMUSG00000063260	Syt10	-	synaptotagmin X	protein-coding	0.075000	0.636816	
mm_52284.1	chr6	108661662	108661862	+	1	NA	NA	NA	-828	NR_104577	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.035000	0.552239	
mm_95284.1	chr11	45893785	45893985	+	1	NA	NA	NA	41921	NM_001045520	216705	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.030000	0.417910	
mm_42630.1	chr5	118435744	118435944	+	1	NA	NA	NA	-124875	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.020000	0.482587	
mm_20768.1	chr2	142879495	142879695	-	1	NA	NA	NA	21869	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.020000	0.497512	
mm_112589.1	chr13	13784292	13784492	+	1	NA	NA	NA	85	NM_010317	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0.095000	0.721393	
mm_79341.1	chr9	53383924	53384124	+	1	NA	NA	NA	1	NM_212445	68304	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0.110000	0.751244	
mm_64385.1	chr7	142475089	142475289	+	1	NA	NA	NA	-1824	NM_001271523	16985	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.020000	0.636816	
mm_49661.1	chr6	31216594	31216794	+	1	NA	NA	NA	1780	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.130000	0.731343	
mm_109052.1	chr12	104339249	104339449	+	1	NA	NA	NA	863	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.005000	0.487562	
mm_117996.1	chr13	100492272	100492472	-	1	NA	NA	NA	237	NM_022011	23894	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	0.075000	0.686567	
mm_104824.1	chr11	99024088	99024288	-	1	NA	NA	NA	1	NM_011623	21973	Mm.4237	NM_011623	ENSMUSG00000020914	Top2a	Top-2	topoisomerase (DNA) II alpha	protein-coding	0.095000	0.562189	-37(GGCTAGATAAAG,-,0.00)
mm_152553.1	chr19	11484432	11484632	-	1	NA	NA	NA	-7506	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.015000	0.437811	7(GTCTTTTTGAGG,-,0.00)
mm_59070.1	chr7	19508628	19508828	+	1	NA	NA	NA	58	NM_025960	67091	Mm.44213	NM_025960	ENSMUSG00000002043	Trappc6a	1810073E21Rik|4930519D19Rik|AI480686|TRS33|mhyp	trafficking protein particle complex 6A	protein-coding	0.090000	0.641791	
mm_2374.1	chr1	93305853	93306053	+	1	NA	NA	NA	-74	NM_001310756	69821	Mm.52809	NM_178051	ENSMUSG00000026273	Mterf4	1810059A23Rik|4933412H03Rik|Mterfd2	mitochondrial transcription termination factor 4	protein-coding	0.070000	0.601990	
mm_169458.1	chr1	46383436	46383636	+	1	NA	NA	NA	-41982	NM_001310335	100101919	Mm.383402	NM_001310335	ENSMUSG00000101337	Dnah7c	Dnahc7c	dynein, axonemal, heavy chain 7C	protein-coding	0.015000	0.527363	
mm_147508.1	chr18	50568585	50568785	-	1	NA	NA	NA	14	NM_026108	67365	Mm.158150	NM_026108	ENSMUSG00000048875	Hdhd1a	1700121L12Rik|GS1|Hdhd1|Pudp	haloacid dehalogenase-like hydrolase domain containing 1A	protein-coding	0.035000	0.492537	
mm_46807.1	chr5	113077076	113077276	-	1	NA	NA	NA	4408	NM_001159650	12962	Mm.378899	NM_021352	ENSMUSG00000029352	Crybb3	AI852419	crystallin, beta B3	protein-coding	0.010000	0.507463	
mm_38309.1	chr4	136956475	136956675	-	1	NA	NA	NA	241	NM_007939	13842	Mm.1390	NM_007939	ENSMUSG00000028661	Epha8	AW047546|Eek|Hek3|mKIAA1459	Eph receptor A8	protein-coding	0.100000	0.726368	
mm_26484.1	chr3	144727700	144727900	+	1	NA	NA	NA	-7465	NM_001282037	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.020000	0.442786	
mm_171258.1	chr3	8245428	8245628	-	1	NA	NA	NA	217570	NR_033512	620966	Mm.301719	NR_033512		Gm6194	1700003N22Rik|EG620966	transmembrane protein 189 pseudogene	pseudo	0.005000	0.467662	
mm_102271.1	chr11	55394806	55395006	-	1	NA	NA	NA	25174	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.020000	0.527363	
mm_122855.1	chr14	54870830	54871030	-	1	NA	NA	NA	6608	NM_001167908	105651	Mm.297365	NM_001167908	ENSMUSG00000072494	Ppp1r3e	A630071A11Rik|AW049239|Gm1211	protein phosphatase 1, regulatory (inhibitor) subunit 3E	protein-coding	0.020000	0.482587	
mm_2008.1	chr1	87127438	87127638	+	1	NA	NA	NA	2530	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.080000	0.631841	
mm_50973.1	chr6	61180366	61180566	+	1	NA	NA	NA	141	NM_183310	232035	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding	0.155000	0.786070	
mm_38038.1	chr4	133899381	133899581	-	1	NA	NA	NA	-11684	NM_009097	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.005000	0.517413	
mm_43065.1	chr5	124328102	124328302	+	1	NA	NA	NA	113	NM_001134717	72650	Mm.121658	NM_028310	ENSMUSG00000047635	2810006K23Rik	-	RIKEN cDNA 2810006K23 gene	protein-coding	0.060000	0.592040	
mm_114620.1	chr13	75967629	75967829	+	1	NA	NA	NA	-10	NM_029343	75571	Mm.443291	NM_029343	ENSMUSG00000021590	Spata9	1700030K01Rik|4930599C08Rik|A930023H06Rik	spermatogenesis associated 9	protein-coding	0.005000	0.462687	
mm_54398.1	chr6	31480072	31480272	-	1	NA	NA	NA	81344	NM_013791	27418	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0.010000	0.492537	
mm_136281.1	chr16	91069079	91069279	-	1	NA	NA	NA	-34	NM_028905	74387	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.020000	0.537313	
mm_18470.1	chr2	62411751	62411951	-	1	NA	NA	NA	380	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.090000	0.621891	
mm_50722.1	chr6	52235024	52235224	+	1	NA	NA	NA	-185	NM_008263	15395	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0.060000	0.601990	
mm_15689.1	chr2	163658421	163658621	+	1	NA	NA	NA	63	NM_001164053	18769	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.155000	0.766169	
mm_123235.1	chr14	60121633	60121833	-	1	NA	NA	NA	-34899	NM_015803	50769	Mm.319599	NM_015803	ENSMUSG00000021983	Atp8a2	AI415030|Atpc1b|agil|wl	ATPase, aminophospholipid transporter-like, class I, type 8A, member 2	protein-coding	0.030000	0.537313	
mm_110575.1	chr12	56497314	56497514	-	1	NA	NA	NA	32006	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.000000	0.442786	
mm_162098.1	chrX	37651189	37651389	-	1	NA	NA	NA	38	NM_001039698	664608	Mm.491809	NM_001039698	ENSMUSG00000079628	Rhox4g	Rhox4.6|Rhox4.7|Rhox4f	reproductive homeobox 4G	protein-coding	0.085000	0.542289	
mm_31213.1	chr4	43965453	43965653	+	1	NA	NA	NA	7851	NM_027450	384009	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0.000000	0.532338	
mm_56723.1	chr6	115592485	115592685	-	1	NA	NA	NA	-9	NM_001101431	70291	Mm.133694	NM_001101431	ENSMUSG00000068011	Mkrn2os	2510049J12Rik	makorin, ring finger protein 2, opposite strand	protein-coding	0.005000	0.477612	-90(TCTTTAAGAGTC,+,0.00)
mm_37771.1	chr4	129810880	129811080	-	1	NA	NA	NA	-9499	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.070000	0.661692	
mm_123888.1	chr14	72709907	72710107	-	1	NA	NA	NA	-4	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.155000	0.746269	
mm_84215.1	chr9	61913348	61913548	-	1	NA	NA	NA	1062	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.025000	0.577114	
mm_71748.1	chr8	65209075	65209275	+	1	NA	NA	NA	-79638	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA	0.015000	0.462687	
mm_54196.1	chr6	24619502	24619702	-	1	NA	NA	NA	21831	NM_053098	93677	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	0.015000	0.646766	
mm_56711.1	chr6	115252085	115252285	-	1	NA	NA	NA	-336	NM_080639	110595	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	TIMP-4	tissue inhibitor of metalloproteinase 4	protein-coding	0.000000	0.477612	
mm_6954.1	chr1	85960951	85961151	-	1	NA	NA	NA	4	NM_001033290	227326	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0.020000	0.542289	
mm_71999.1	chr8	70649555	70649755	+	1	NA	NA	NA	10083	NM_023217	66522	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0.010000	0.557214	
mm_58334.1	chr6	146634413	146634613	-	1	NA	NA	NA	79	NM_026281	67623	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	0.185000	0.815920	
mm_48131.1	chr5	137149847	137150047	-	1	NA	NA	NA	-33740	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.010000	0.507463	
mm_35436.1	chr4	38803917	38804117	-	1	NA	NA	NA	-646276	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0.005000	0.517413	-73(GCCTATAGGGCC,+,0.00)
mm_159216.1	chr2	126374601	126374801	-	1	NA	NA	NA	116852	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	0.010000	0.373134	
mm_86832.1	chr10	21252310	21252510	+	1	NA	NA	NA	-43569	NM_001042593	56422	Mm.25527	NM_019702	ENSMUSG00000019977	Hbs1l	2810035F15Rik|AI326327|eRFS	Hbs1-like (S. cerevisiae)	protein-coding	0.030000	0.507463	-43(TACTTTAAAAGC,-,0.00),-42(ACTTTAAAAGCC,+,0.00)
mm_16656.1	chr2	6583621	6583821	-	1	NA	NA	NA	137941	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.010000	0.577114	
mm_47487.1	chr5	123879935	123880135	-	1	NA	NA	NA	-15	NM_175520	243270	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	0.020000	0.557214	
mm_165133.1	chr2	10080394	10080594	-	1	NA	NA	NA	16	NM_020615	11949	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	0.120000	0.681592	
mm_59715.1	chr7	28766743	28766943	+	1	NA	NA	NA	91	NM_001122766	64383	Mm.272443	NM_022432	ENSMUSG00000015149	Sirt2	5730427M03Rik|SIR2L2|Sir2l	sirtuin 2	protein-coding	0.080000	0.691542	
mm_35514.1	chr4	41114591	41114791	-	1	NA	NA	NA	9648	NM_139236	230082	Mm.285797	NM_139236	ENSMUSG00000028430	Nol6	AA410091|Nrap	nucleolar protein family 6 (RNA-associated)	protein-coding	0.005000	0.532338	
mm_169472.1	chr1	4689313	4689513	-	1	NA	NA	NA	96313	NR_033530	27395	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	0.045000	0.512438	
mm_26257.1	chr3	142496832	142497032	+	1	NA	NA	NA	-2	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.020000	0.512438	
mm_48595.1	chr5	143992616	143992816	-	1	NA	NA	NA	22137	NM_177682	231874	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0.025000	0.517413	
mm_39418.1	chr5	15934613	15934813	+	1	NA	NA	NA	22	NM_001110844	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.150000	0.791045	
mm_65690.1	chr7	28372453	28372653	-	1	NA	NA	NA	109	NM_138752	101497	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.095000	0.706468	76(GTTTTAAGAGAC,+,0.00)
mm_107657.1	chr12	52783194	52783394	+	1	NA	NA	NA	83911	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.035000	0.597015	
mm_133244.1	chr16	77111529	77111729	+	1	NA	NA	NA	97560	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.005000	0.328358	68(GCCTTTTAGAGC,-,0.00),69(CCTTTTAGAGCC,+,0.00)
mm_143618.1	chr17	78773500	78773700	-	1	NA	NA	NA	-37040	NM_011500	268980	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	0.040000	0.562189	
mm_74513.1	chr8	8689755	8689955	-	1	NA	NA	NA	307	NR_106114	102465762		NR_106114	ENSMUSG00000098917	Mir7654	Gm27748|mmu-mir-7654	microRNA 7654	ncRNA	0.135000	0.761194	
mm_32198.1	chr4	101419614	101419814	+	1	NA	NA	NA	11	NM_009647	11639	Mm.42040	NM_009647	ENSMUSG00000028527	Ak4	AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e	adenylate kinase 4	protein-coding	0.095000	0.751244	-14(GTCTTTAAAGCC,+,0.00)
mm_110209.1	chr12	27342611	27342811	-	1	NA	NA	NA	7	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.070000	0.582090	
mm_2030.1	chr1	87190532	87190732	+	1	NA	NA	NA	35	NM_021600	11447	Mm.2811	NM_021600	ENSMUSG00000026251	Chrnd	Achr-4|Acrd|L10076	cholinergic receptor, nicotinic, delta polypeptide	protein-coding	0.010000	0.572139	
mm_3407.1	chr1	144001500	144001700	+	1	NA	NA	NA	2549	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.010000	0.462687	
mm_4572.1	chr1	177740743	177740943	+	1	NA	NA	NA	11029	NM_027077	69428	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.005000	0.422886	
mm_76988.1	chr8	107056571	107056771	-	1	NA	NA	NA	66	NM_139229	97484	Mm.288641	NM_139229	ENSMUSG00000031916	Cog8	BB235941|C87832	component of oligomeric golgi complex 8	protein-coding	0.100000	0.616915	
mm_99227.1	chr11	101054988	101055188	+	1	NA	NA	NA	-15006	NM_013792	27419	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.045000	0.577114	
mm_59538.1	chr7	27804746	27804946	+	1	NA	NA	NA	-2350	NM_027703	71163	Mm.440493	NM_027703	ENSMUSG00000030604	Zfp626	4833408D11Rik|4933426I21Rik|7630402I04Rik	zinc finger protein 626	protein-coding	0.070000	0.552239	
mm_37074.1	chr4	116163663	116163863	-	1	NA	NA	NA	3835	NM_133681	66805	Mm.45994	NM_133681	ENSMUSG00000028699	Tspan1	9030418M05Rik	tetraspanin 1	protein-coding	0.010000	0.482587	
mm_128224.1	chr15	36496665	36496865	-	1	NA	NA	NA	26	NM_175134	68839	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0.115000	0.771144	
mm_32087.1	chr4	98436834	98437034	+	1	NA	NA	NA	41108	NM_172696	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.015000	0.517413	
mm_31924.1	chr4	85388720	85388920	+	1	NA	NA	NA	183364	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.020000	0.472637	
mm_152874.1	chr19	24508154	24508354	-	1	NA	NA	NA	-30780	NM_026520	68034	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding	0.035000	0.507463	
mm_70871.1	chr8	25068365	25068565	+	1	NA	NA	NA	-29503	NM_001081187	330723	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0.035000	0.552239	
mm_42691.1	chr5	119835060	119835260	+	1	NA	NA	NA	497	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.025000	0.601990	
mm_150169.1	chr19	32491183	32491383	+	1	NA	NA	NA	5514	NM_010799	17330	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0.000000	0.363184	
mm_7152.1	chr1	91405980	91406180	-	1	NA	NA	NA	-51	NR_026924	67086	Mm.396158	NR_026924	ENSMUSG00000100253	1700020N18Rik	-	RIKEN cDNA 1700020N18 gene	ncRNA	0.080000	0.686567	
mm_69664.1	chr7	139980675	139980875	-	1	NA	NA	NA	-2020	NM_001347613	381933	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0.010000	0.442786	
mm_31821.1	chr4	66841859	66842059	+	1	NA	NA	NA	14408	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.005000	0.268657	
mm_170935.1	chr2	47128612	47128812	-	1	NA	NA	NA	1432107	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.010000	0.507463	
mm_131013.1	chr15	103563187	103563387	-	1	NA	NA	NA	1794	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.005000	0.517413	
mm_21337.1	chr2	157106173	157106373	-	1	NA	NA	NA	19218	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.015000	0.402985	
mm_6351.1	chr1	71649201	71649401	-	1	NA	NA	NA	3933	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.015000	0.497512	
mm_107317.1	chr12	31266186	31266386	+	1	NA	NA	NA	992	NM_008482	16777	Mm.172674	NM_008482	ENSMUSG00000002900	Lamb1	C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1	laminin B1	protein-coding	0.075000	0.616915	
mm_122968.1	chr14	54974108	54974308	-	1	NA	NA	NA	1568	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.005000	0.482587	72(GTTTTTAGACAC,+,0.00)
mm_13252.1	chr2	98663764	98663964	+	1	NA	NA	NA	1196207	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.015000	0.323383	
mm_119648.1	chr14	51988951	51989151	+	1	NA	NA	NA	-222	NR_045728	100502764	Mm.437219	NR_045728	ENSMUSG00000097633	Gm16617	-	predicted gene, 16617	ncRNA	0.035000	0.616915	
mm_102401.1	chr11	59084149	59084349	-	1	NA	NA	NA	52126	NM_001171512	380698	Mm.339542	NM_199152	ENSMUSG00000061462	Obscn	BC046431|Gm878|OTTMUSG00000005786|UNC89	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein-coding	0.000000	0.527363	
mm_120028.1	chr14	55824854	55825054	+	1	NA	NA	NA	159	NM_023699	73181	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	0.065000	0.636816	
mm_151654.1	chr19	4121459	4121659	-	1	NA	NA	NA	16	NM_001276284	11632	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.070000	0.587065	
mm_22932.1	chr3	31163045	31163245	+	1	NA	NA	NA	13225	NM_008770	18417	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.050000	0.587065	
mm_153560.1	chr19	42202036	42202236	-	1	NA	NA	NA	116	NM_018780	54612	Mm.470071	NM_018780	ENSMUSG00000018822	Sfrp5	AI605071|SARP3	secreted frizzled-related sequence protein 5	protein-coding	0.095000	0.711443	
mm_105571.1	chr11	106587843	106588043	-	1	NA	NA	NA	24987	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.010000	0.427861	
mm_38061.1	chr4	134018689	134018889	-	1	NA	NA	NA	27	NM_145833	83557	Mm.302567	NM_145833	ENSMUSG00000050966	Lin28a	AL024421|ENSMUSG00000070700|Gm10299|Lin-28|Lin28|Tex17|lin-28A	lin-28 homolog A (C. elegans)	protein-coding	0.070000	0.651741	
mm_92907.1	chr10	83533955	83534155	-	1	NA	NA	NA	85	NM_153543	216188	Mm.263138	NM_153543	ENSMUSG00000020256	Aldh1l2	D330038I09Rik|mtFDH	aldehyde dehydrogenase 1 family, member L2	protein-coding	0.070000	0.671642	
mm_142553.1	chr17	46629360	46629560	-	1	NA	NA	NA	44	NM_175168	71461	Mm.181833	NM_175168	ENSMUSG00000023972	Ptk7	8430404F20Rik|chz|mPTK7/CCK4	PTK7 protein tyrosine kinase 7	protein-coding	0.175000	0.815920	
mm_36659.1	chr4	94978985	94979185	-	1	NA	NA	NA	15	NM_177239	320713	Mm.208868	NM_177239	ENSMUSG00000062627	Mysm1	C130067A03Rik|C530050H10Rik	myb-like, SWIRM and MPN domains 1	protein-coding	0.130000	0.741294	
mm_163827.1	chr14	19417295	19417495	-	1	NA	NA	NA	185192	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.030000	0.358209	
mm_77481.1	chr8	122475915	122476115	-	1	NA	NA	NA	49	NM_001033142	68718	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	0.145000	0.796020	
mm_80818.1	chr9	96637329	96637529	+	1	NA	NA	NA	-5926	NM_053268	114713	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.010000	0.407960	
mm_16482.1	chr2	180890606	180890806	+	1	NA	NA	NA	-3334	NR_029538	723951		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA	0.050000	0.611940	
mm_90753.1	chr10	5548604	5548804	-	1	NA	NA	NA	1988	NM_153399	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.010000	0.482587	
mm_138002.1	chr17	33817611	33817811	+	1	NA	NA	NA	6787	NM_016844	54127	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	0.135000	0.771144	
mm_132728.1	chr16	43626551	43626751	+	1	NA	NA	NA	-14004	NR_030576	100124467		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.010000	0.442786	
mm_1806.1	chr1	81077135	81077335	+	1	NA	NA	NA	-82	NM_172849	241134	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	0.020000	0.567164	
mm_27594.1	chr3	59130972	59131172	-	1	NA	NA	NA	46	NM_001287122	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.010000	0.437811	
mm_88520.1	chr10	78054765	78054965	+	1	NA	NA	NA	-470	NM_001284198	54427	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.010000	0.472637	
mm_110865.1	chr12	73546297	73546497	-	1	NA	NA	NA	-2	NM_178715	238257	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	0.140000	0.796020	
mm_48798.1	chr5	148928822	148929022	-	1	NA	NA	NA	-275	NM_153572	231912	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	0.110000	0.726368	
mm_26672.1	chr3	154718001	154718201	+	1	NA	NA	NA	6968	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.015000	0.338308	
mm_155924.1	chrX	103356402	103356602	+	1	NA	NA	NA	26	NM_009767	12212	Mm.42223	NM_009767	ENSMUSG00000031327	Chic1	Brx|ENSMUSG00000073019|Gm10454	cysteine-rich hydrophobic domain 1	protein-coding	0.070000	0.646766	
mm_82619.1	chr9	21794917	21795117	-	1	NA	NA	NA	3529	NM_145611	235041	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	0.045000	0.616915	
mm_102266.1	chr11	55337689	55337889	-	1	NA	NA	NA	-25532	NM_001029988	245827	Mm.339363	NM_001029988	ENSMUSG00000055333	Fat2	EMI2|Fath2|Gm523|mKIAA0811	FAT atypical cadherin 2	protein-coding	0.020000	0.497512	
mm_159705.1	chr5	28237773	28237973	-	1	NA	NA	NA	7915	NM_001310512	269637	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.000000	0.557214	
mm_119912.1	chr14	54952951	54953151	+	1	NA	NA	NA	-3909	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.010000	0.482587	
mm_34904.1	chr4	155669570	155669770	+	1	NA	NA	NA	-416	NM_001256107	76580	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	0.030000	0.447761	
mm_83268.1	chr9	42944395	42944595	-	1	NA	NA	NA	-124	NM_175481	110637	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0.135000	0.656716	
mm_13912.1	chr2	120501724	120501924	+	1	NA	NA	NA	24915	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.015000	0.562189	
mm_160689.1	chr10	22361809	22362009	+	1	NA	NA	NA	15	NM_020030	56554	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0.045000	0.621891	
mm_108118.1	chr12	75669757	75669957	+	1	NA	NA	NA	-320	NM_028203	72338	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0.060000	0.532338	
mm_61408.1	chr7	73537859	73538059	+	1	NA	NA	NA	3787	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.100000	0.636816	
mm_149202.1	chr19	9978842	9979042	+	1	NA	NA	NA	-1658	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.010000	0.537313	
mm_115548.1	chr13	8870929	8871129	-	1	NA	NA	NA	15	NM_001039389	207615	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.100000	0.606965	-51(TTTTTTAAGGAC,+,0.00)
mm_125060.1	chr15	25940614	25940814	+	1	NA	NA	NA	12	NM_001277315	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.030000	0.502488	
mm_171844.1	chr5	16755629	16755829	+	1	NA	NA	NA	201828	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.050000	0.641791	
mm_158535.1	chrX	143931351	143931551	-	1	NA	NA	NA	1673	NM_001110222	13193	Mm.12871	NM_010025	ENSMUSG00000031285	Dcx	Dbct	doublecortin	protein-coding	0.000000	0.477612	
mm_40543.1	chr5	58014516	58014716	+	1	NA	NA	NA	296535	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.005000	0.288557	
mm_76438.1	chr8	84990786	84990986	-	1	NA	NA	NA	291	NM_001167991	170833	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	0.040000	0.601990	
mm_166017.1	chr4	121608896	121609096	+	1	NA	NA	NA	13129	NM_001099309	666927	Mm.465133	NM_001099309	ENSMUSG00000078575	Gm12887	OTTMUSG00000008910	predicted gene 12887	protein-coding	0.000000	0.412935	
mm_65447.1	chr7	25398608	25398808	-	1	NA	NA	NA	-2721	NM_010719	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.005000	0.492537	79(AGCTATAAAGGA,-,0.00)
mm_105969.1	chr11	115491556	115491756	-	1	NA	NA	NA	127	NR_136931	102634812	Mm.390379	NR_136931		LOC102634812	-	ribosomal protein L39 pseudogene	pseudo	0.095000	0.646766	
mm_7908.1	chr1	133689831	133690031	-	1	NA	NA	NA	85	NM_172842	240754	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	0.020000	0.562189	
mm_104068.1	chr11	86585348	86585548	-	1	NA	NA	NA	-1290	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.402985	
mm_32186.1	chr4	101068955	101069155	+	1	NA	NA	NA	17	NM_183024	242570	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.185000	0.820896	
mm_51311.1	chr6	72314091	72314291	+	1	NA	NA	NA	9581	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.030000	0.631841	
mm_377.1	chr1	34011455	34011655	+	1	NA	NA	NA	-270	NM_133833	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.150000	0.776119	
mm_93385.1	chr10	105841248	105841448	-	1	NA	NA	NA	32	NM_207522	216292	Mm.250875	NM_207522	ENSMUSG00000036009	Mettl25	-	methyltransferase like 25	protein-coding	0.110000	0.701493	
mm_60801.1	chr7	45627388	45627588	+	1	NA	NA	NA	-49	NM_028544	69903	Mm.181396	NM_028544	ENSMUSG00000044562	Rasip1	1110025D03Rik|2610025P08Rik|AI853551|Rain	Ras interacting protein 1	protein-coding	0.035000	0.641791	
mm_132754.1	chr16	44173155	44173355	+	1	NA	NA	NA	-142	NM_001029889	207806	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.140000	0.800995	
mm_33053.1	chr4	123116156	123116356	+	1	NA	NA	NA	8	NM_181859	353371	Mm.189660	NM_181859	ENSMUSG00000076438	Oxct2b	Scot-t2	3-oxoacid CoA transferase 2B	protein-coding	0.060000	0.661692	
mm_150217.1	chr19	33115315	33115515	+	1	NA	NA	NA	276880	NM_001167818	67795	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	0.005000	0.293532	27(CTCCTTAAAAAA,-,0.00)
mm_48023.1	chr5	136244754	136244954	-	1	NA	NA	NA	86	NM_001302939	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.115000	0.756219	
mm_75501.1	chr8	53446785	53446985	-	1	NA	NA	NA	-64817	NM_001205054	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.020000	0.447761	
mm_14087.1	chr2	125151740	125151940	+	1	NA	NA	NA	-760	NM_183354	20495	Mm.3914	NM_011389	ENSMUSG00000027202	Slc12a1	AI788571|D630042G03Rik|Nkcc2|mBSC1|urehr3	solute carrier family 12, member 1	protein-coding	0.015000	0.412935	
mm_10748.1	chr2	23156081	23156281	+	1	NA	NA	NA	-157	NM_025979	67121	Mm.253721	NM_025979	ENSMUSG00000026779	Mastl	2700091H24Rik|C88295|GW|GWL|MAST-L|THC2	microtubule associated serine/threonine kinase-like	protein-coding	0.040000	0.532338	
mm_609.1	chr1	39971267	39971467	+	1	NA	NA	NA	70454	NM_008696	26921	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.010000	0.457711	
mm_59390.1	chr7	26757062	26757262	+	1	NA	NA	NA	20	NM_007814	13090	Mm.14098	NM_007814	ENSMUSG00000066704	Cyp2b19	CYPIIB19	cytochrome P450, family 2, subfamily b, polypeptide 19	protein-coding	0.010000	0.487562	-33(CACCATAAAAGA,-,0.00)
mm_58451.1	chr7	3330158	3330358	+	1	NA	NA	NA	-6327	NM_133189	81904	Mm.214994	NM_133189	ENSMUSG00000069806	Cacng7	-	calcium channel, voltage-dependent, gamma subunit 7	protein-coding	0.060000	0.587065	
mm_75387.1	chr8	45410894	45411094	-	1	NA	NA	NA	-455	NM_126166	142980	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0.005000	0.402985	
mm_28924.1	chr3	98858154	98858354	-	1	NA	NA	NA	1540	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.010000	0.417910	
mm_81937.1	chr9	120303828	120304028	+	1	NA	NA	NA	-145	NM_144557	245049	Mm.100936	NM_144557	ENSMUSG00000041794	Myrip	A230081N12Rik|Slac2-c|Slac2c	myosin VIIA and Rab interacting protein	protein-coding	0.175000	0.840796	
mm_156486.1	chrX	144335868	144336068	+	1	NA	NA	NA	18002	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.015000	0.437811	
mm_28744.1	chr3	95739465	95739665	-	1	NA	NA	NA	4	NM_007899	13601	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	0.010000	0.567164	-34(GCATATAAAGAG,+,0.00)
mm_39107.1	chr4	154925161	154925361	-	1	NA	NA	NA	2816	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.010000	0.547264	
mm_160419.1	chr8	84147928	84148128	+	1	NA	NA	NA	-10	NM_001163752	74666	Mm.33625	NM_029045	ENSMUSG00000008129	4930432K21Rik	-	RIKEN cDNA 4930432K21 gene	protein-coding	0.090000	0.616915	
mm_54357.1	chr6	31088342	31088542	-	1	NA	NA	NA	-25349	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.010000	0.442786	-70(GTCTTTAAAAAG,-,0.00)
mm_107292.1	chr12	30019540	30019740	+	1	NA	NA	NA	81604	NM_181395	69675	Mm.251774	NM_181395	ENSMUSG00000020674	Pxdn	2310075M15Rik|C85409|E330004E07|VPO1|mKIAA0230	peroxidasin	protein-coding	0.005000	0.293532	
mm_148876.1	chr19	6497864	6498064	+	1	NA	NA	NA	45106	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.100000	0.731343	
mm_128341.1	chr15	38709694	38709894	-	1	NA	NA	NA	18722	NR_131206	105463124	Mm.432448	NR_131206		Borg	-	BMP/OP-responsive gene	ncRNA	0.025000	0.487562	
mm_161490.1	chr15	85735426	85735626	+	1	NA	NA	NA	-38	NM_001113418	19013	Mm.212789	NM_011144	ENSMUSG00000022383	Ppara	4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar	peroxisome proliferator activated receptor alpha	protein-coding	0.160000	0.805970	
mm_100203.1	chr11	116843488	116843688	+	1	NA	NA	NA	73	NM_028865	74319	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	0.120000	0.726368	
mm_61502.1	chr7	76457187	76457387	+	1	NA	NA	NA	227400	NM_001199224	244071	Mm.322829	NM_172902	ENSMUSG00000025754	Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding	0.000000	0.258706	
mm_53918.1	chr6	4069664	4069864	-	1	NA	NA	NA	17163	NM_009748	12068	Mm.286457	NM_009748	ENSMUSG00000032757	Bet1	AW555236|Bet-1	Bet1 golgi vesicular membrane trafficking protein	protein-coding	0.005000	0.417910	
mm_63904.1	chr7	139213172	139213372	+	1	NA	NA	NA	-3	NM_001143755	76612	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	0.110000	0.666667	
mm_129564.1	chr15	79546484	79546684	-	1	NA	NA	NA	-25	NM_199079	67040	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.130000	0.641791	
mm_107371.1	chr12	32850690	32850890	+	1	NA	NA	NA	26674	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.000000	0.328358	
mm_163513.1	chr12	113427370	113427570	-	1	NA	NA	NA	-62095	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.432836	
mm_68655.1	chr7	118578280	118578480	-	1	NA	NA	NA	6306	NM_172476	209760	Mm.69380	NM_172476	ENSMUSG00000042246	Tmc7	1700030H01Rik|C230064B05|C630024K23Rik	transmembrane channel-like gene family 7	protein-coding	0.005000	0.567164	
mm_62316.1	chr7	100285421	100285621	+	1	NA	NA	NA	1	NM_177161	320452	Mm.150294	NM_177161	ENSMUSG00000051048	P4ha3	D930031A02Rik	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III	protein-coding	0.155000	0.800995	
mm_139710.1	chr17	57459931	57460131	+	1	NA	NA	NA	85283	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.005000	0.358209	
mm_23225.1	chr3	49062354	49062554	+	1	NA	NA	NA	-453354	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo	0.025000	0.467662	
mm_132336.1	chr16	33819613	33819813	+	1	NA	NA	NA	-9952	NM_010580	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.005000	0.472637	
mm_68834.1	chr7	126200417	126200617	-	1	NA	NA	NA	-18	NM_001311143	74204	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|mKIAA0370	exportin 6	protein-coding	0.095000	0.711443	
mm_87853.1	chr10	61171837	61172037	+	1	NA	NA	NA	-27	NM_001017419	65971	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.005000	0.512438	
mm_107580.1	chr12	44525597	44525797	+	1	NA	NA	NA	196812	NM_001146031	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.020000	0.492537	
mm_169444.1	chr14	56998132	56998332	-	1	NA	NA	NA	-16902	NM_001256060	432860	Mm.390718	NM_001256060	ENSMUSG00000096144	B020004C17Rik	-	RIKEN cDNA B020004C17 gene	protein-coding	0.055000	0.646766	
mm_79441.1	chr9	56089982	56090182	+	1	NA	NA	NA	106	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.025000	0.666667	
mm_99575.1	chr11	104132747	104132947	+	1	NA	NA	NA	66	NM_001313929	12921	Mm.1892	NM_007762	ENSMUSG00000018634	Crhr1	CRF1R|CRFR1|Crhr	corticotropin releasing hormone receptor 1	protein-coding	0.090000	0.741294	
mm_126207.1	chr15	78889709	78889909	+	1	NA	NA	NA	-2031	NR_105920	102466210		NR_105920	ENSMUSG00000099267	Mir6955	Gm27769|mmu-mir-6955	microRNA 6955	ncRNA	0.030000	0.661692	
mm_127455.1	chr15	101271642	101271842	+	1	NA	NA	NA	4896	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.040000	0.626866	
mm_151561.1	chr19	60581155	60581355	+	1	NA	NA	NA	-232	NM_001172096	78832	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	0.070000	0.542289	
mm_130353.1	chr15	97750799	97750999	-	1	NA	NA	NA	16767	NM_001177810	223864	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.025000	0.606965	
mm_121315.1	chr14	109247718	109247918	+	1	NA	NA	NA	-212412	NR_039542	100628607		NR_039542	ENSMUSG00000092639	Mir3964	mmu-mir-3964|mu-mir-3964	microRNA 3964	ncRNA	0.000000	0.437811	
mm_44833.1	chr5	34105692	34105892	-	1	NA	NA	NA	-12948	NR_040703	75357	Mm.410806	NR_040703	ENSMUSG00000106902	4930557J02Rik	-	RIKEN cDNA 4930557J02 gene	ncRNA	0.005000	0.502488	
mm_118746.1	chr14	22325314	22325514	+	1	NA	NA	NA	217384	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.000000	0.432836	-71(CCTCTAAAACCC,+,0.00),-2(GCTTATCTAGTC,+,0.00)
mm_40928.1	chr5	76205771	76205971	+	1	NA	NA	NA	21991	NM_011626	21982	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0.010000	0.398010	-60(CCTTAAAAATGC,+,0.00)
mm_141197.1	chr17	27021188	27021388	-	1	NA	NA	NA	3253	NM_001251881	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.040000	0.552239	-60(GCCTATTTAAGA,-,0.00)
mm_104565.1	chr11	96916292	96916492	-	1	NA	NA	NA	122	NM_001308183	80280	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0.040000	0.616915	
mm_2156.1	chr1	88200518	88200718	+	1	NA	NA	NA	7	NM_013701	22236	Mm.300095	NM_013701	ENSMUSG00000090171	Ugt1a2	UDPGT 1-2|Ugt1	UDP glucuronosyltransferase 1 family, polypeptide A2	protein-coding	0.015000	0.527363	
mm_80791.1	chr9	96043507	96043707	+	1	NA	NA	NA	-75822	NM_177352	235533	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	0.005000	0.323383	-69(GTCTTTTAAAAA,-,0.00)
mm_29162.1	chr3	106166128	106166328	-	1	NA	NA	NA	1336	NM_009892	12655	Mm.387173	NM_009892	ENSMUSG00000040809	Chil3	AI505981|Chi3l3|ECF-L|Ym1	chitinase-like 3	protein-coding	0.005000	0.353234	
mm_132307.1	chr16	33684389	33684589	+	1	NA	NA	NA	23	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629|OTTMUSG00000027315	heart development protein with EGF-like domains 1	protein-coding	0.150000	0.796020	
mm_165802.1	chr3	143017115	143017315	+	1	NA	NA	NA	-135211	NM_178654	109333	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	0.015000	0.467662	
mm_54621.1	chr6	38551134	38551334	-	1	NA	NA	NA	-100	NM_138680	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.075000	0.542289	
mm_44183.1	chr5	151368903	151369103	+	1	NA	NA	NA	328	NR_045699	625175	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0.075000	0.587065	
mm_59331.1	chr7	25396085	25396285	+	1	NA	NA	NA	-198	NM_010719	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.045000	0.532338	
mm_10709.1	chr2	22774299	22774499	+	1	NA	NA	NA	72	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.070000	0.671642	
mm_57631.1	chr6	128300414	128300614	-	1	NA	NA	NA	299	NM_001080979	21679	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	0.100000	0.731343	
mm_57199.1	chr6	122850382	122850582	-	1	NA	NA	NA	5675	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.030000	0.492537	
mm_46787.1	chr5	112589920	112590120	-	1	NA	NA	NA	-24	NR_045397	67325	Mm.490791	NR_045396	ENSMUSG00000097962	1700034G24Rik	-	RIKEN cDNA 1700034G24 gene	ncRNA	0.010000	0.557214	
mm_161108.1	chr12	103827912	103828112	-	1	NA	NA	NA	35607	NM_001252569	20700	Mm.439692	NM_009243	ENSMUSG00000066366	Serpina1a	Aat-2|Aat2|Dom1|PI1|Spi1-1|Spi1-3	serine (or cysteine) peptidase inhibitor, clade A, member 1A	protein-coding	0.010000	0.512438	-30(GCTTAAATACAG,+,0.00)
mm_46404.1	chr5	104092986	104093186	-	1	NA	NA	NA	-15478	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.045000	0.507463	
mm_51133.1	chr6	68518889	68519089	+	1	NA	NA	NA	808185	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.422886	
mm_130075.1	chr15	89373720	89373920	-	1	NA	NA	NA	-2	NM_001111288	100126824	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	0.080000	0.651741	
mm_83317.1	chr9	44135098	44135298	-	1	NA	NA	NA	540	NM_023061	84004	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.075000	0.706468	
mm_6547.1	chr1	75133381	75133581	-	1	NA	NA	NA	409	NM_194333	22626	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.015000	0.577114	
mm_38139.1	chr4	134757544	134757744	-	1	NA	NA	NA	10360	NM_145554	100017	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.000000	0.527363	
mm_51272.1	chr6	72115171	72115371	+	1	NA	NA	NA	7669	NR_045163	71265	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.030000	0.542289	6(CAGTATTTAAGC,-,0.00)
mm_87538.1	chr10	53595813	53596013	+	1	NA	NA	NA	-1048	NM_025541	66403	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0.010000	0.427861	5(GCCTTGAAATGG,-,0.00)
mm_116541.1	chr13	45925311	45925511	-	1	NA	NA	NA	39580	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.005000	0.517413	
mm_25618.1	chr3	118456222	118456422	+	1	NA	NA	NA	22465	NR_029551	387155		NR_029551	ENSMUSG00000065569	Mir137	Mirn137|mir-137|mmu-mir-137	microRNA 137	ncRNA	0.005000	0.293532	
mm_128625.1	chr15	59024186	59024386	-	1	NA	NA	NA	57740	NM_001146180	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.020000	0.378109	
mm_12508.1	chr2	71980891	71981091	+	1	NA	NA	NA	-224	NM_001204167	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.060000	0.577114	
mm_138972.1	chr17	45298006	45298206	+	1	NA	NA	NA	135601	NM_152810	71702	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0.005000	0.467662	
mm_114984.1	chr13	97482601	97482801	+	1	NA	NA	NA	0	NR_110430	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.000000	0.472637	
mm_91778.1	chr10	52195182	52195382	-	1	NA	NA	NA	-38	NM_011282	19886	Mm.236163	NM_011282	ENSMUSG00000019893	Ros1	Ros-1|c-ros	Ros1 proto-oncogene	protein-coding	0.015000	0.452736	
mm_143407.1	chr17	70819802	70820002	-	1	NA	NA	NA	26875	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.005000	0.358209	
mm_84936.1	chr9	82951371	82951571	-	1	NA	NA	NA	24018	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.000000	0.343284	
mm_139801.1	chr17	66111535	66111735	+	1	NA	NA	NA	-10	NM_001037757	68767	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	0.105000	0.731343	
mm_131646.1	chr16	20531763	20531963	+	1	NA	NA	NA	-3617	NM_001302970	11773	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.005000	0.512438	
mm_71953.1	chr8	70501044	70501244	+	1	NA	NA	NA	5595	NM_025577	66462	Mm.28242	NM_025577	ENSMUSG00000058833	2810428I15Rik	-	RIKEN cDNA 2810428I15 gene	protein-coding	0.095000	0.656716	
mm_117015.1	chr13	58126686	58126886	-	1	NA	NA	NA	1770	NM_029872	77134	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	0.015000	0.393035	-87(CCGTTTTAAAGG,-,0.00)
mm_38023.1	chr4	133757318	133757518	-	1	NA	NA	NA	-3807	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.085000	0.626866	
mm_12775.1	chr2	79328275	79328475	+	1	NA	NA	NA	72949	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.005000	0.452736	
mm_50607.1	chr6	49395445	49395645	+	1	NA	NA	NA	-59	NM_029916	77485	Mm.128054	NM_029916	ENSMUSG00000023403	Stk31	C330007K24Rik	serine threonine kinase 31	protein-coding	0.095000	0.726368	
mm_42235.1	chr5	113589038	113589238	+	1	NA	NA	NA	38718	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.035000	0.517413	
mm_141696.1	chr17	33978757	33978957	-	1	NA	NA	NA	-66	NR_004446	630499	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	0.040000	0.592040	
mm_156256.1	chrX	136741743	136741943	+	1	NA	NA	NA	-234	NM_019768	56397	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	0.075000	0.611940	
mm_21472.1	chr2	160989204	160989404	-	1	NA	NA	NA	-76965	NM_182840	280635	Mm.330747	NM_182840	ENSMUSG00000050700	Emilin3	1110013O17Rik|EMILIN-3|EMILIN-5|EMILIN-T|Emilin5	elastin microfibril interfacer 3	protein-coding	0.005000	0.432836	
mm_124649.1	chr15	5153054	5153254	+	1	NA	NA	NA	9293	NM_001013367	105787	Mm.207004	NM_001013367	ENSMUSG00000050697	Prkaa1	AI194361|AI450832|AL024255|AMPKalpha1|C130083N04Rik	protein kinase, AMP-activated, alpha 1 catalytic subunit	protein-coding	0.010000	0.323383	-58(TCTTTAAAGGAC,+,0.00)
mm_99283.1	chr11	101316822	101317022	+	1	NA	NA	NA	671	NM_011192	19192	Mm.288477	NM_011192	ENSMUSG00000078652	Psme3	AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	protein-coding	0.020000	0.552239	
mm_116941.1	chr13	56089074	56089274	-	1	NA	NA	NA	46376	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.025000	0.606965	
mm_91731.1	chr10	45486274	45486474	-	1	NA	NA	NA	-16173	NM_001031772	380669	Mm.440328	NM_001031772	ENSMUSG00000063804	Lin28b	2810403D23Rik|D030047M17Rik|Lin-28.2	lin-28 homolog B (C. elegans)	protein-coding	0.170000	0.791045	
mm_88422.1	chr10	77202105	77202305	+	1	NA	NA	NA	-35675	NM_009929	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.015000	0.527363	
mm_129705.1	chr15	81729739	81729939	-	1	NA	NA	NA	80	NM_011241	19387	Mm.270975	NM_011241	ENSMUSG00000022391	Rangap1	C79654|Fug1|mKIAA1835	RAN GTPase activating protein 1	protein-coding	0.090000	0.601990	
mm_128771.1	chr15	66560932	66561132	-	1	NA	NA	NA	14	NM_172514	213068	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	0.020000	0.487562	
mm_73052.1	chr8	94365797	94365997	+	1	NA	NA	NA	-20603	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.025000	0.601990	
mm_70764.1	chr8	21776481	21776681	+	1	NA	NA	NA	26	NM_007843	13214	Mm.431316	NM_007843	ENSMUSG00000044748	Defb1	AW260221|BD-1	defensin beta 1	protein-coding	0.005000	0.467662	-27(TCCTATAAAAAA,-,0.00)
mm_44981.1	chr5	36988846	36989046	-	1	NA	NA	NA	36	NM_011716	22393	Mm.20916	NM_011716	ENSMUSG00000039474	Wfs1	AI481085|wolframin	Wolfram syndrome 1 homolog (human)	protein-coding	0.105000	0.711443	
mm_49951.1	chr6	40471336	40471536	+	1	NA	NA	NA	21	NM_028358	381760	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	0.115000	0.646766	
mm_93061.1	chr10	88788285	88788485	-	1	NA	NA	NA	38429	NM_175158	70683	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	0.020000	0.343284	-88(ATGTTTATAAGC,-,0.00),49(TTCCTTAAAAGC,-,0.00),59(GCTTAAAAACCA,+,0.00)
mm_47673.1	chr5	127783075	127783275	-	1	NA	NA	NA	150913	NM_177005	319804	Mm.237888	NM_177005	ENSMUSG00000049971	Glt1d1	5730455A04Rik	glycosyltransferase 1 domain containing 1	protein-coding	0.000000	0.422886	
mm_28673.1	chr3	95306702	95306902	-	1	NA	NA	NA	2	NM_001085383	71790	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	0.005000	0.587065	
mm_141159.1	chr17	26508131	26508331	-	1	NA	NA	NA	241	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.115000	0.686567	
mm_50662.1	chr6	51523833	51524033	+	1	NA	NA	NA	30	NM_001127349	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.150000	0.746269	
mm_19275.1	chr2	85198659	85198859	-	1	NA	NA	NA	-2060	NM_001033346	241528	Mm.291095	NM_001033346	ENSMUSG00000075224	Lrrc55	A330097E02Rik|Gm351	leucine rich repeat containing 55	protein-coding	0.010000	0.537313	
mm_69550.1	chr7	135697818	135698018	-	1	NA	NA	NA	18461	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.005000	0.492537	
mm_98197.1	chr11	87795193	87795393	+	1	NA	NA	NA	1509	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.030000	0.572139	
mm_27538.1	chr3	57576342	57576542	-	1	NA	NA	NA	-532	NM_001168281	97064	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0.045000	0.497512	
mm_104568.1	chr11	96936281	96936481	-	1	NA	NA	NA	7057	NM_146026	217138	Mm.342551	NM_146026	ENSMUSG00000047040	Prr15l	Atad4|BC022765|E230006A12Rik	proline rich 15-like	protein-coding	0.000000	0.507463	
mm_104681.1	chr11	97699605	97699805	-	1	NA	NA	NA	-57	NM_001163308	22658	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	0.040000	0.601990	
mm_93548.1	chr10	116113838	116114038	-	1	NA	NA	NA	-21	NM_001161855	619332	Mm.391427	NM_001033821	ENSMUSG00000074734	4933416C03Rik	-	RIKEN cDNA 4933416C03 gene	protein-coding	0.065000	0.681592	
mm_93048.1	chr10	88503839	88504039	-	1	NA	NA	NA	31	NR_027477	212862	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	0.155000	0.860697	
mm_69905.1	chr7	141639846	141640046	-	1	NA	NA	NA	15373	NM_001330001	353328	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0.005000	0.427861	
mm_54020.1	chr6	8735212	8735412	-	1	NA	NA	NA	23146	NM_001252266	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.000000	0.437811	
mm_161691.1	chr17	22361285	22361485	-	1	NA	NA	NA	15	NM_176962	319615	Mm.442162	NM_176962	ENSMUSG00000033972	Zfp944	6330416L07Rik	zinc finger protein 944	protein-coding	0.075000	0.611940	
mm_135559.1	chr16	50046147	50046347	-	1	NA	NA	NA	26605	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.050000	0.532338	-30(GCATAAATAGAG,+,0.00)
mm_73259.1	chr8	104340584	104340784	+	1	NA	NA	NA	90	NM_024217	68119	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.065000	0.661692	
mm_35746.1	chr4	45409356	45409556	-	1	NA	NA	NA	-690	NM_001009949	230125	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0.030000	0.537313	
mm_83118.1	chr9	40392359	40392559	-	1	NA	NA	NA	58987	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.030000	0.597015	
mm_63165.1	chr7	123993241	123993441	+	1	NA	NA	NA	10160	NM_001252072	628779	Mm.40210	NM_001252072	ENSMUSG00000078591	Hs3st4	EG628779|Gm6915	heparan sulfate (glucosamine) 3-O-sulfotransferase 4	protein-coding	0.005000	0.477612	
mm_126603.1	chr15	82454038	82454238	+	1	NA	NA	NA	1761	NM_010006	13105	Mm.226708	NM_010006	ENSMUSG00000068086	Cyp2d9	Cyp2d|P450-2D	cytochrome P450, family 2, subfamily d, polypeptide 9	protein-coding	0.030000	0.606965	
mm_71370.1	chr8	45763803	45764003	+	1	NA	NA	NA	55394	NR_045739	319940	Mm.441720	NR_045739	ENSMUSG00000085440	Sorbs2os	D330022K07Rik	sorbin and SH3 domain containing 2, opposite strand	ncRNA	0.025000	0.567164	
mm_137118.1	chr17	22497350	22497550	+	1	NA	NA	NA	73248	NM_001331198	74149	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	0.010000	0.492537	
mm_13310.1	chr2	102658658	102658858	+	1	NA	NA	NA	75	NM_001077514	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.100000	0.666667	
mm_49366.1	chr6	23248524	23248724	+	1	NA	NA	NA	-360	NM_028462	73191	Mm.55115	NM_028462	ENSMUSG00000029697	Fezf1	3110069A13Rik|Fez|Zfp312-like|fez-like	Fez family zinc finger 1	protein-coding	0.025000	0.447761	
mm_91023.1	chr10	17919940	17920140	-	1	NA	NA	NA	28027	NM_001033432	380629	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.020000	0.422886	
mm_19292.1	chr2	90457481	90457681	-	1	NA	NA	NA	21593	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.015000	0.437811	
mm_130336.1	chr15	97731107	97731307	-	1	NA	NA	NA	198	NM_001168693	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.025000	0.552239	-47(CCTTTTATAGTG,+,0.00)
mm_105429.1	chr11	103901018	103901218	-	1	NA	NA	NA	52938	NM_008740	18195	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	0.020000	0.452736	-5(TTTTATAAAAGG,-,0.00)
mm_62933.1	chr7	118712495	118712695	+	1	NA	NA	NA	-16	NM_182995	101565	Mm.23279	NM_182995	ENSMUSG00000033904	Ccp110	6330503K22Rik|AA415922|AI427129|AW557948|CP110	centriolar coiled coil protein 110	protein-coding	0.075000	0.651741	
mm_121627.1	chr14	8317724	8317924	-	1	NA	NA	NA	-8048	NM_183187	268709	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0.030000	0.582090	
mm_155582.1	chrX	78446536	78446736	+	1	NA	NA	NA	76993	NM_001177966	74910	Mm.159364	NM_001177966	ENSMUSG00000035651	4930480E11Rik	-	RIKEN cDNA 4930480E11 gene	protein-coding	0.005000	0.268657	-54(ACCTATTTAAAG,-,0.00)
mm_101765.1	chr11	43747889	43748089	-	1	NA	NA	NA	-16	NM_133795	66827	Mm.271974	NM_133795	ENSMUSG00000041278	Ttc1	4833412C19Rik|C79328|TPR1	tetratricopeptide repeat domain 1	protein-coding	0.070000	0.631841	
mm_169059.1	chr13	23803583	23803783	-	1	NA	NA	NA	-3344	NM_144836	218103	Mm.24030	NM_144836	ENSMUSG00000036110	Slc17a2	C730032N17Rik|NPT3	solute carrier family 17 (sodium phosphate), member 2	protein-coding	0.035000	0.432836	-18(GCTTTTAAAAAG,+,0.00),-18(GCTTTTAAAAAG,-,0.00)
mm_31876.1	chr4	80910578	80910778	+	1	NA	NA	NA	-8	NM_026821	52829	Mm.273986	NM_026821	ENSMUSG00000048706	Lurap1l	1110029A09Rik|AV077978|AV175137|D4Bwg0951e|WI-13707|bM350F23.1	leucine rich adaptor protein 1-like	protein-coding	0.030000	0.497512	
mm_34843.1	chr4	155409175	155409375	+	1	NA	NA	NA	85	NM_001166029	544678	Mm.472798	NM_177674	ENSMUSG00000078490	Cfap74	2010015L04Rik|A530045M11	cilia and flagella associated protein 74	protein-coding	0.075000	0.636816	
mm_64886.1	chr7	15920580	15920780	-	1	NA	NA	NA	1691	NM_009156	20364	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0.020000	0.507463	
mm_162314.1	chr1	37998093	37998293	+	1	NA	NA	NA	183	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.120000	0.706468	
mm_5644.1	chr1	40515123	40515323	-	1	NA	NA	NA	-139	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.015000	0.432836	
mm_18014.1	chr2	38290309	38290509	-	1	NA	NA	NA	-3025	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.010000	0.507463	
mm_97266.1	chr11	75764998	75765198	+	1	NA	NA	NA	-30711	NR_136933	102641247	Mm.411386	NR_136932		Gm12339	OTTMUSG00000006218	predicted gene 12339	ncRNA	0.010000	0.348259	
mm_101961.1	chr11	50300881	50301081	-	1	NA	NA	NA	-8645	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.010000	0.497512	
mm_125361.1	chr15	39434254	39434454	+	1	NA	NA	NA	-225157	NM_001256384	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.005000	0.407960	
mm_27337.1	chr3	50406791	50406991	-	1	NA	NA	NA	36722	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.507463	
mm_95139.1	chr11	35078468	35078668	+	1	NA	NA	NA	-42888	NM_011412	20564	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit homolog 3 (Drosophila)	protein-coding	0.015000	0.457711	
mm_87573.1	chr10	56388019	56388219	+	1	NA	NA	NA	10819	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.025000	0.542289	
mm_151201.1	chr19	53539282	53539482	+	1	NA	NA	NA	10064	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.010000	0.422886	
mm_116305.1	chr13	36734278	36734478	-	1	NA	NA	NA	99	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.040000	0.482587	
mm_19611.1	chr2	102746645	102746845	-	1	NA	NA	NA	40307	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.010000	0.512438	
mm_82316.1	chr9	7873075	7873275	-	1	NA	NA	NA	-5	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.030000	0.527363	-45(GCCTCTTAAGGC,-,0.00),-44(CCTCTTAAGGCG,+,0.00)
mm_42133.1	chr5	111123994	111124194	+	1	NA	NA	NA	119950	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.000000	0.388060	
mm_126359.1	chr15	80024388	80024588	+	1	NA	NA	NA	-9680	NM_011057	18591	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.025000	0.597015	
mm_40027.1	chr5	33378664	33378864	+	1	NA	NA	NA	68	NM_001081101	71101	Mm.132178	NM_001081101	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	0.085000	0.656716	
mm_54310.1	chr6	30135856	30136056	-	1	NA	NA	NA	30036	NR_029569	387177		NR_029569	ENSMUSG00000076361	Mir182	Mirn182|mir-182|mmu-mir-182	microRNA 182	ncRNA	0.005000	0.487562	
mm_90983.1	chr10	13678899	13679099	-	1	NA	NA	NA	-125857	NM_001347361	56535	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	0.005000	0.303483	
mm_132138.1	chr16	31933887	31934087	+	1	NA	NA	NA	136	NM_172822	239827	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.085000	0.701493	
mm_57583.1	chr6	127150950	127151150	-	1	NA	NA	NA	-2	NM_009829	12444	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.055000	0.641791	
mm_51326.1	chr6	72351763	72351963	+	1	NA	NA	NA	-3620	NM_144916	232086	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	0.005000	0.472637	
mm_26161.1	chr3	138277551	138277751	+	1	NA	NA	NA	6	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.025000	0.497512	
mm_102442.1	chr11	59542423	59542623	-	1	NA	NA	NA	-163	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.015000	0.462687	-87(TTCTTTTAATGG,-,0.00),-85(CTTTTAATGGAA,+,0.00)
mm_34336.1	chr4	143389599	143389799	+	1	NA	NA	NA	-4742	NM_031377	83491	Mm.190607	NM_031377	ENSMUSG00000041805	Pramel1	-	preferentially expressed antigen in melanoma-like 1	protein-coding	0.045000	0.542289	
mm_131736.1	chr16	22009358	22009558	+	1	NA	NA	NA	-26	NM_029457	75826	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.110000	0.661692	
mm_111733.1	chr12	103827947	103828147	-	1	NA	NA	NA	35572	NM_001252569	20700	Mm.439692	NM_009243	ENSMUSG00000066366	Serpina1a	Aat-2|Aat2|Dom1|PI1|Spi1-1|Spi1-3	serine (or cysteine) peptidase inhibitor, clade A, member 1A	protein-coding	0.015000	0.512438	5(GCTTAAATACAG,+,0.00)
mm_77832.1	chr9	4309735	4309935	+	1	NA	NA	NA	19	NM_026962	69149	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	0.065000	0.582090	
mm_159610.1	chr4	131967976	131968176	-	1	NA	NA	NA	46305	NM_001201367	623230	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.015000	0.467662	-59(TACCTTAAAAAG,-,0.00),-57(CCTTAAAAAGCA,+,0.00)
mm_158691.1	chrX	160976394	160976594	-	1	NA	NA	NA	18187	NM_001024624	382253	Mm.443717	NM_001024624	ENSMUSG00000031292	Cdkl5	BC038161|Stk9	cyclin-dependent kinase-like 5	protein-coding	0.005000	0.567164	
mm_68035.1	chr7	101301634	101301834	-	1	NA	NA	NA	354	NM_001111111	73683	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.050000	0.592040	
mm_43317.1	chr5	134966753	134966953	+	1	NA	NA	NA	-19361	NM_009902	12739	Mm.158662	NM_009902	ENSMUSG00000070473	Cldn3	AI182374|Cpetr2|mRVP1	claudin 3	protein-coding	0.025000	0.527363	
mm_118477.1	chr14	11640021	11640221	+	1	NA	NA	NA	86568	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.010000	0.323383	
mm_59599.1	chr7	28139817	28140017	+	1	NA	NA	NA	10451	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.060000	0.616915	
mm_14740.1	chr2	144368831	144369031	+	1	NA	NA	NA	-52	NM_001164813	100048644	Mm.227925	NM_001164813	ENSMUSG00000098387	Pet117	Gm20571	PET117 homolog	protein-coding	0.120000	0.711443	
mm_112699.1	chr13	17700248	17700448	+	1	NA	NA	NA	4935	NM_025479	66308	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	0.000000	0.328358	55(GCTTTTATAGTT,+,0.00)
mm_136469.1	chr16	95586490	95586690	-	1	NA	NA	NA	3	NM_001302152	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	0.040000	0.552239	
mm_51094.1	chr6	67238022	67238222	+	1	NA	NA	NA	-28857	NM_001113564	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.030000	0.582090	
mm_141020.1	chr17	25136374	25136574	-	1	NA	NA	NA	-157	NM_001317404	26373	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.000000	0.582090	
mm_40157.1	chr5	35583600	35583800	+	1	NA	NA	NA	640	NM_030721	80911	Mm.291503	NM_030721	ENSMUSG00000029098	Acox3	BI685180|EST-s59|PCOX	acyl-Coenzyme A oxidase 3, pristanoyl	protein-coding	0.005000	0.437811	
mm_75734.1	chr8	69522876	69523076	-	1	NA	NA	NA	102199	NM_001045553	234362	Mm.458487	NM_172754	ENSMUSG00000060427	Zfp868	AI449175|AW108241|C530032E20|mszf62	zinc finger protein 868	protein-coding	0.015000	0.452736	
mm_82509.1	chr9	20492644	20492844	-	1	NA	NA	NA	2	NM_146221	235028	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	0.080000	0.587065	
mm_108419.1	chr12	81971134	81971334	+	1	NA	NA	NA	111204	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	0.025000	0.517413	
mm_24472.1	chr3	90669454	90669654	+	1	NA	NA	NA	483	NM_013650	20201	Mm.21567	NM_013650	ENSMUSG00000056054	S100a8	60B8Ag|AI323541|B8Ag|CFAg|CP-10|Caga|MRP8|p8	S100 calcium binding protein A8 (calgranulin A)	protein-coding	0.020000	0.452736	
mm_60290.1	chr7	43998757	43998957	+	1	NA	NA	NA	2980	NM_010640	16613	Mm.443378	NM_010640	ENSMUSG00000044485	Klk1b11	Klk11|mGK-11	kallikrein 1-related peptidase b11	protein-coding	0.025000	0.517413	
mm_120194.1	chr14	61599460	61599660	+	1	NA	NA	NA	48	NM_023233	66597	Mm.491258	NM_023233	ENSMUSG00000035235	Trim13	3110001L12Rik|CAR|LEU5|RNF77|Rfp2	tripartite motif-containing 13	protein-coding	0.110000	0.741294	
mm_141652.1	chr17	33685298	33685498	-	1	NA	NA	NA	60	NM_001109913	76936	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	0.125000	0.676617	
mm_157792.1	chrX	73854443	73854643	-	1	NA	NA	NA	26291	NM_008478	16728	Mm.260568	NM_008478	ENSMUSG00000031391	L1cam	CD171|L1|N-CAM-L1|NCAM-L1	L1 cell adhesion molecule	protein-coding	0.005000	0.542289	
mm_63767.1	chr7	131223253	131223453	+	1	NA	NA	NA	48951	NM_175166	71395	Mm.118845	NM_175166	ENSMUSG00000006204	5430419D17Rik	-	RIKEN cDNA 5430419D17 gene	protein-coding	0.010000	0.462687	
mm_61337.1	chr7	68277651	68277851	+	1	NA	NA	NA	-1157	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.005000	0.457711	
mm_82372.1	chr9	14615203	14615403	-	1	NA	NA	NA	-303	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.015000	0.482587	
mm_75213.1	chr8	39605403	39605603	-	1	NA	NA	NA	37175	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.258706	
mm_112829.1	chr13	20818244	20818444	+	1	NA	NA	NA	24231	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.437811	
mm_91051.1	chr10	18786684	18786884	-	1	NA	NA	NA	9	NM_177706	237300	Mm.444821	NM_177706	ENSMUSG00000044624	Gm4922	4933423E17|EG237300	predicted gene 4922	protein-coding	0.005000	0.457711	
mm_396.1	chr1	34121314	34121514	+	1	NA	NA	NA	4055	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.020000	0.522388	
mm_64700.1	chr7	4547321	4547521	-	1	NA	NA	NA	-854	NM_016908	53420	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	0.085000	0.641791	
mm_33698.1	chr4	133584285	133584485	+	1	NA	NA	NA	12	NM_133884	100210	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	0.080000	0.621891	
mm_32478.1	chr4	107879671	107879871	+	1	NA	NA	NA	16	NM_001282737	17149	Mm.808	NM_001282737	ENSMUSG00000028609	Magoh	Mago-m|Mos2	mago homolog, exon junction complex core component	protein-coding	0.090000	0.582090	
mm_165436.1	chr2	153874942	153875142	+	1	NA	NA	NA	-3	NM_025631	66557	Mm.46448	NM_025631	ENSMUSG00000027481	Bpifb2	2310034L21Rik|2310069A01Rik|AV089125|Bpil1|LPLUNC2|RYSR	BPI fold containing family B, member 2	protein-coding	0.030000	0.577114	-1(CCTCATAAAGCA,+,0.00)
mm_121549.1	chr14	122475280	122475480	+	1	NA	NA	NA	-4	NM_009574	22772	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0.090000	0.721393	-8(CCTTTAATACAC,+,0.00)
mm_97807.1	chr11	82961431	82961631	+	1	NA	NA	NA	-850	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.025000	0.497512	
mm_133297.1	chr16	77500453	77500653	+	1	NA	NA	NA	-98383	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.010000	0.437811	
mm_117582.1	chr13	89384722	89384922	-	1	NA	NA	NA	-155814	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.000000	0.447761	
mm_135651.1	chr16	52394704	52394904	-	1	NA	NA	NA	58277	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.268657	
mm_67003.1	chr7	65213269	65213469	-	1	NA	NA	NA	-56841	NM_183087	70638	Mm.441986	NM_183087	ENSMUSG00000030518	Fam189a1	5730507A09Rik|AW047451	family with sequence similarity 189, member A1	protein-coding	0.035000	0.532338	
mm_33467.1	chr4	130812466	130812666	+	1	NA	NA	NA	20029	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.010000	0.577114	
mm_35691.1	chr4	44072919	44073119	-	1	NA	NA	NA	-346	NM_001190414	50798	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	0.030000	0.537313	
mm_90365.1	chr10	127166594	127166794	+	1	NA	NA	NA	863	NM_001244618	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.020000	0.532338	
mm_4050.1	chr1	165788658	165788858	+	1	NA	NA	NA	77	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.010000	0.577114	
mm_7576.1	chr1	124845972	124846172	-	1	NA	NA	NA	589655	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.015000	0.388060	
mm_19284.1	chr2	89946906	89947106	-	1	NA	NA	NA	-2893	NM_146341	258338	Mm.354180	NM_146341	ENSMUSG00000068806	Olfr1259	MOR232-9	olfactory receptor 1259	protein-coding	0.000000	0.452736	-3(GCTTTAAGGCAC,+,0.00)
mm_34993.1	chr4	156030868	156031068	+	1	NA	NA	NA	4626	NM_021985	21936	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	0.020000	0.587065	
mm_164296.1	chr15	103895901	103896101	+	1	NA	NA	NA	3299	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.005000	0.328358	
mm_151898.1	chr19	5799020	5799220	-	1	NA	NA	NA	-3139	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.000000	0.328358	-10(ACCTTTAAAAGT,-,0.00),-9(CCTTTAAAAGTT,+,0.00)
mm_168935.1	chr12	69095189	69095389	+	1	NA	NA	NA	63897	NM_009093	20090	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0.010000	0.472637	
mm_149947.1	chr19	27335431	27335631	+	1	NA	NA	NA	12912	NM_183179	240595	Mm.269759	NM_183179	ENSMUSG00000047298	Kcnv2	KV11.1	potassium channel, subfamily V, member 2	protein-coding	0.005000	0.447761	-33(CGCTATATAAGA,-,0.00)
mm_139976.1	chr17	71781197	71781397	+	1	NA	NA	NA	-2	NM_001271483	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	0.025000	0.502488	
mm_13687.1	chr2	117120676	117120876	+	1	NA	NA	NA	-295	NM_001277256	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.100000	0.651741	
mm_66415.1	chr7	44524553	44524753	-	1	NA	NA	NA	16	NM_146189	233199	Mm.358888	NM_146189	ENSMUSG00000038670	Mybpc2	-	myosin binding protein C, fast-type	protein-coding	0.045000	0.631841	-97(CCCTTTAGAGCA,+,0.00),-35(CTCCATAAAGGG,-,0.00)
mm_32657.1	chr4	115088970	115089170	+	1	NA	NA	NA	362	NM_001164557	67182	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	0.015000	0.567164	-39(TCCTTTAGAGTC,+,0.00)
mm_102610.1	chr11	62457464	62457664	-	1	NA	NA	NA	-232	NM_177229	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.145000	0.751244	
mm_74177.1	chr8	123454163	123454363	+	1	NA	NA	NA	11004	NM_001281803	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.020000	0.527363	
mm_46477.1	chr5	105131640	105131840	-	1	NA	NA	NA	7812	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.442786	
mm_103098.1	chr11	69936055	69936255	-	1	NA	NA	NA	-173	NM_001347634	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.125000	0.800995	
mm_168543.1	chr1	162706481	162706681	+	1	NA	NA	NA	33975	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.015000	0.398010	
mm_123739.1	chr14	70184960	70185160	-	1	NA	NA	NA	7186	NM_001271409	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.045000	0.577114	
mm_69711.1	chr7	140116312	140116512	-	1	NA	NA	NA	11	NM_053119	93747	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	0.085000	0.656716	
mm_94230.1	chr11	3290224	3290424	+	1	NA	NA	NA	-133	NM_001253690	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.125000	0.731343	
mm_41315.1	chr5	90470025	90470225	+	1	NA	NA	NA	9255	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.005000	0.328358	
mm_90419.1	chr10	127476427	127476627	+	1	NA	NA	NA	-25190	NM_177707	237611	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0.015000	0.542289	
mm_39778.1	chr5	30155177	30155377	+	1	NA	NA	NA	24	NM_001289798	231086	Mm.291463	NM_145558	ENSMUSG00000059447	Hadhb	4930479F15Rik|Mtpb|TP-beta	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit	protein-coding	0.110000	0.646766	
mm_85606.1	chr9	107596952	107597152	-	1	NA	NA	NA	8350	NM_009153	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.005000	0.552239	
mm_134879.1	chr16	28929947	28930147	-	1	NA	NA	NA	-349	NM_177718	239796	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.065000	0.552239	-37(CCCTTTAAATGG,+,0.00),-37(CCCTTTAAATGG,-,0.00)
mm_33465.1	chr4	130811568	130811768	+	1	NA	NA	NA	19131	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.020000	0.532338	
mm_36141.1	chr4	59438565	59438765	-	1	NA	NA	NA	-32	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.040000	0.577114	
mm_26453.1	chr3	142700955	142701155	+	1	NA	NA	NA	7	NM_001293560	229905	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0.065000	0.606965	
mm_1461.1	chr1	67437100	67437300	+	1	NA	NA	NA	314173	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.015000	0.472637	
mm_46321.1	chr5	100719569	100719769	-	1	NA	NA	NA	47	NM_152803	15442	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	0.065000	0.731343	
mm_18264.1	chr2	52308245	52308445	-	1	NA	NA	NA	17343	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.005000	0.432836	
mm_148221.1	chr18	80257343	80257543	-	1	NA	NA	NA	1137	NM_001164423	66943	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.015000	0.467662	
mm_162491.1	chr1	135849343	135849543	-	1	NA	NA	NA	8582	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.025000	0.562189	
mm_102929.1	chr11	69600688	69600888	-	1	NA	NA	NA	5172	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.010000	0.507463	
mm_140334.1	chr17	86760342	86760542	+	1	NA	NA	NA	6578	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.005000	0.507463	
mm_33906.1	chr4	136310842	136311042	+	1	NA	NA	NA	0	NM_001277122	74326	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	0.120000	0.661692	
mm_133152.1	chr16	70314574	70314774	+	1	NA	NA	NA	725	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.030000	0.497512	
mm_72193.1	chr8	72492920	72493120	+	1	NA	NA	NA	-406	NM_177766	270066	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	0.070000	0.567164	
mm_159272.1	chr2	164486051	164486251	+	1	NA	NA	NA	11	NM_001048227	52840	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	0.070000	0.651741	
mm_28145.1	chr3	87330761	87330961	-	1	NA	NA	NA	-27020	NM_009690	11801	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	0.005000	0.452736	-35(GAGTATAAAAGA,-,0.00)
mm_143791.1	chr17	81738286	81738486	-	1	NA	NA	NA	1	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.025000	0.512438	
mm_84169.1	chr9	59940933	59941133	-	1	NA	NA	NA	9046	NM_013708	23958	Mm.103641	NM_013708	ENSMUSG00000032292	Nr2e3	A930035N01Rik|PNR|RNR|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding	0.020000	0.497512	
mm_63689.1	chr7	130574946	130575146	+	1	NA	NA	NA	-2438	NM_001004468	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.010000	0.517413	
mm_138672.1	chr17	35887848	35888048	+	1	NA	NA	NA	8170	NM_026987	69192	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	0.050000	0.611940	
mm_22622.1	chr3	14649736	14649936	+	1	NA	NA	NA	8109	NM_024495	71934	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	0.005000	0.398010	
mm_157512.1	chrX	49288107	49288307	-	1	NA	NA	NA	35	NM_001271449	209224	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	0.050000	0.597015	
mm_35804.1	chr4	46629973	46630173	-	1	NA	NA	NA	20126	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	0.020000	0.592040	
mm_119630.1	chr14	51220189	51220389	+	1	NA	NA	NA	16594	NM_017389	503847	Mm.377124	NM_017389	ENSMUSG00000050766	Ear14	-	eosinophil-associated, ribonuclease A family, member 14	protein-coding	0.015000	0.457711	
mm_52630.1	chr6	117174216	117174416	+	1	NA	NA	NA	5781	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.015000	0.532338	
mm_19897.1	chr2	114052101	114052301	-	1	NA	NA	NA	674	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.015000	0.447761	80(CCCTCTAAAGGA,-,0.00)
mm_99456.1	chr11	102434384	102434584	+	1	NA	NA	NA	4162	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.010000	0.517413	52(GCCCATATATAG,-,0.00),54(CCATATATAGTC,+,0.00)
mm_67233.1	chr7	75199178	75199378	-	1	NA	NA	NA	109108	NM_001109753	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.000000	0.298507	
mm_10227.1	chr2	6322667	6322867	+	1	NA	NA	NA	10	NM_001080548	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.135000	0.761194	
mm_106613.1	chr11	120816314	120816514	-	1	NA	NA	NA	8133	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.025000	0.567164	
mm_51826.1	chr6	89294847	89295047	+	1	NA	NA	NA	-9222	NR_131021	75131	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	-	RIKEN cDNA 4930512J16 gene	ncRNA	0.005000	0.542289	
mm_119393.1	chr14	41137715	41137915	+	1	NA	NA	NA	6027	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.005000	0.442786	-13(CTTCTTATGGGC,+,0.00)
mm_119730.1	chr14	54074921	54075121	+	1	NA	NA	NA	178908	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.487562	
mm_11280.1	chr2	30062461	30062661	+	1	NA	NA	NA	565	NM_023871	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.045000	0.631841	
mm_7945.1	chr1	133914876	133915076	-	1	NA	NA	NA	6425	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.020000	0.572139	
mm_24309.1	chr3	89418459	89418659	+	1	NA	NA	NA	8	NM_011368	20416	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	0.035000	0.572139	
mm_1352.1	chr1	66321715	66321915	+	1	NA	NA	NA	91	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.020000	0.467662	
mm_4949.1	chr1	191201385	191201585	+	1	NA	NA	NA	-18152	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.015000	0.437811	
mm_107354.1	chr12	32821226	32821426	+	1	NA	NA	NA	991	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.025000	0.457711	
mm_171480.1	chr4	145868691	145868891	+	1	NA	NA	NA	31572	NR_033612	236069	Mm.276881	NR_033612	ENSMUSG00000096233	Gm13238	OTTMUSG00000011065	carnitine deficiency-associated gene expressed in ventricle 3 pseudogene	pseudo	0.015000	0.507463	
mm_11265.1	chr2	29999905	30000105	+	1	NA	NA	NA	4055	NR_105963	102465603		NR_105963	ENSMUSG00000098453	Mir6997	Gm27310|mmu-mir-6997	microRNA 6997	ncRNA	0.030000	0.562189	
mm_124204.1	chr14	98920799	98920999	-	1	NA	NA	NA	125237	NM_175245	76789	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0.030000	0.477612	
mm_74173.1	chr8	123443214	123443414	+	1	NA	NA	NA	55	NM_001281803	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.060000	0.641791	
mm_119569.1	chr14	50061259	50061459	+	1	NA	NA	NA	23320	NM_146316	258313	Mm.463727	NM_146316	ENSMUSG00000060523	Olfr726	MOR246-4	olfactory receptor 726	protein-coding	0.025000	0.517413	-32(GGGTATTTAAGC,-,0.00)
mm_74054.1	chr8	122306875	122307075	+	1	NA	NA	NA	24834	NM_009569	22761	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.055000	0.517413	67(ACTTTTATACCA,+,0.00)
mm_126394.1	chr15	80192962	80193162	+	1	NA	NA	NA	19341	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.010000	0.577114	
mm_148615.1	chr19	5388723	5388923	+	1	NA	NA	NA	-120	NM_016882	20227	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	0.075000	0.616915	
mm_149096.1	chr19	8932368	8932568	+	1	NA	NA	NA	2774	NM_144872	225898	Mm.31008	NM_144872	ENSMUSG00000071647	Eml3	BC022146	echinoderm microtubule associated protein like 3	protein-coding	0.000000	0.497512	
mm_74168.1	chr8	123420644	123420844	+	1	NA	NA	NA	9180	NM_023279	22152	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	0.045000	0.597015	
mm_4583.1	chr1	178299407	178299607	+	1	NA	NA	NA	-19646	NM_025511	66359	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0.060000	0.621891	
mm_24210.1	chr3	88621828	88622028	+	1	NA	NA	NA	534	NM_001198912	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.045000	0.582090	
mm_139096.1	chr17	46910358	46910558	+	1	NA	NA	NA	-27	NM_008938	19133	Mm.291370	NM_008938	ENSMUSG00000023978	Prph2	AOFMD|AVMD|Nmf193|PRPH|RP7|Rd-2|Rd2|Rds|Tspan22|rds	peripherin 2	protein-coding	0.035000	0.512438	
mm_51873.1	chr6	90552213	90552413	+	1	NA	NA	NA	1465	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.000000	0.457711	
mm_21971.1	chr2	167313072	167313272	-	1	NA	NA	NA	36006	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.035000	0.572139	
mm_145344.1	chr18	56470864	56471064	+	1	NA	NA	NA	38832	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.025000	0.467662	
mm_89339.1	chr10	87934735	87934935	+	1	NA	NA	NA	-31836	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.010000	0.402985	
mm_10098.1	chr2	3440938	3441138	+	1	NA	NA	NA	16907	NM_001302684	227525	Mm.23483	NM_146114	ENSMUSG00000026648	Dclre1c	9930121L06Rik|AI661365|Art|Snm1l	DNA cross-link repair 1C	protein-coding	0.015000	0.328358	
mm_153345.1	chr19	39462974	39463174	-	1	NA	NA	NA	1	NM_010002	13097	Mm.42100	NM_010002	ENSMUSG00000032808	Cyp2c38	-	cytochrome P450, family 2, subfamily c, polypeptide 38	protein-coding	0.000000	0.407960	-35(TGCTATAAAAGA,-,0.00)
mm_160884.1	chr11	69761774	69761974	-	1	NA	NA	NA	-30	NM_019871	56293	Mm.6211	NM_019871	ENSMUSG00000018776	Slc35g3	Amac1	solute carrier family 35, member G3	protein-coding	0.010000	0.462687	
mm_88755.1	chr10	80323412	80323612	+	1	NA	NA	NA	-2964	NM_025521	66374	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.060000	0.676617	
mm_21777.1	chr2	164847693	164847893	-	1	NA	NA	NA	9915	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.005000	0.422886	
mm_49045.1	chr6	4760184	4760384	+	1	NA	NA	NA	12978	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.582090	
mm_13389.1	chr2	103969516	103969716	+	1	NA	NA	NA	59	NM_001142336	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.085000	0.631841	
mm_30892.1	chr4	32268233	32268433	+	1	NA	NA	NA	-149102	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.005000	0.472637	
mm_87566.1	chr10	56377319	56377519	+	1	NA	NA	NA	119	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.030000	0.462687	
mm_46465.1	chr5	105121038	105121238	-	1	NA	NA	NA	-10846	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.005000	0.398010	
mm_96894.1	chr11	70437536	70437736	+	1	NA	NA	NA	-619	NR_106064	102465670		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.020000	0.557214	
mm_110226.1	chr12	28750292	28750492	-	1	NA	NA	NA	2	NM_001161410	217449	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	0.100000	0.641791	
mm_103790.1	chr11	82845815	82846015	-	1	NA	NA	NA	-16872	NM_026097	67338	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.035000	0.597015	
mm_142895.1	chr17	51899505	51899705	-	1	NA	NA	NA	16878	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.010000	0.432836	
mm_120061.1	chr14	56864793	56864993	+	1	NA	NA	NA	-22902	NM_029498	76007	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.040000	0.472637	
mm_140634.1	chr17	12507302	12507502	-	1	NA	NA	NA	302	NM_011395	20519	Mm.99252	NM_011395	ENSMUSG00000023828	Slc22a3	EMT|Oct3|Orct3|Slca22a3	solute carrier family 22 (organic cation transporter), member 3	protein-coding	0.130000	0.771144	
mm_75267.1	chr8	40655923	40656123	-	1	NA	NA	NA	-19054	NM_010086	13526	Mm.67403	NM_010086	ENSMUSG00000046723	Adam24	Dtgn5	a disintegrin and metallopeptidase domain 24 (testase 1)	protein-coding	0.010000	0.447761	
mm_101860.1	chr11	48871189	48871389	-	1	NA	NA	NA	57	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding	0.030000	0.497512	
mm_90485.1	chr10	127901917	127902117	+	1	NA	NA	NA	3482	NM_027301	70061	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	0.015000	0.547264	
mm_81130.1	chr9	106499860	106500060	+	1	NA	NA	NA	-7	NM_028843	74267	Mm.116682	NM_028843	ENSMUSG00000066383	Iqcf1	1700055J15Rik	IQ motif containing F1	protein-coding	0.010000	0.512438	
mm_124498.1	chr14	121878953	121879153	-	1	NA	NA	NA	355	NR_130999	78312	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0.095000	0.721393	
mm_136456.1	chr16	94997617	94997817	-	1	NA	NA	NA	-21	NM_010606	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.125000	0.621891	
mm_75001.1	chr8	27228416	27228616	-	1	NA	NA	NA	1072	NM_013462	11556	Mm.278475	NM_013462	ENSMUSG00000031489	Adrb3	Adrb-3	adrenergic receptor, beta 3	protein-coding	0.025000	0.611940	-100(CCTTTAAAAGCA,+,0.00)
mm_125818.1	chr15	74955550	74955750	+	1	NA	NA	NA	544	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.060000	0.636816	
mm_84230.1	chr9	61976487	61976687	-	1	NA	NA	NA	-29788	NM_024245	71819	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.030000	0.562189	-57(GCCTTTATGAAG,-,0.00)
mm_104488.1	chr11	95824311	95824511	-	1	NA	NA	NA	-89	NM_153104	237928	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.150000	0.781095	
mm_163868.1	chr14	19418992	19419192	-	1	NA	NA	NA	183495	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.010000	0.338308	
mm_18615.1	chr2	68426844	68427044	-	1	NA	NA	NA	45037	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.005000	0.363184	
mm_149452.1	chr19	11491974	11492174	+	1	NA	NA	NA	36	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.015000	0.417910	79(CTCTATTAAAGG,-,0.00)
mm_87638.1	chr10	58352011	58352211	+	1	NA	NA	NA	-19343	NM_201242	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.025000	0.457711	
mm_166563.1	chr6	48699075	48699275	+	1	NA	NA	NA	9069	NM_153175	231931	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	0.005000	0.452736	
mm_67038.1	chr7	67152639	67152839	-	1	NA	NA	NA	69719	NR_131044	76628	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0.005000	0.527363	
mm_15745.1	chr2	164237382	164237582	+	1	NA	NA	NA	859	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.432836	
mm_87663.1	chr10	58493695	58493895	+	1	NA	NA	NA	-4142	NM_001162956	76138	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.010000	0.373134	-94(GTCCATTTATGG,-,0.00),-92(CCATTTATGGAG,+,0.00)
mm_26008.1	chr3	135298795	135298995	+	1	NA	NA	NA	-8805	NM_178877	97086	Mm.441764	NM_178877	ENSMUSG00000037994	Slc9b2	C80638|NHA2|NHE10|Nhedc2|nha-oc|nhaoc	solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2	protein-coding	0.010000	0.477612	
mm_57410.1	chr6	124865699	124865899	-	1	NA	NA	NA	-1882	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.015000	0.537313	
mm_172051.1	chr6	128760693	128760893	-	1	NA	NA	NA	27848	NM_008527	17059	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0.050000	0.512438	
mm_146282.1	chr18	77938336	77938536	+	1	NA	NA	NA	-31	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.075000	0.641791	
mm_30780.1	chr4	19280826	19281026	+	1	NA	NA	NA	76	NM_013927	30952	Mm.445778	NM_013927	ENSMUSG00000056494	Cngb3	CCNC2|CNG6|Cngbeta2	cyclic nucleotide gated channel beta 3	protein-coding	0.015000	0.422886	
mm_100885.1	chr11	6018523	6018723	-	1	NA	NA	NA	47125	NM_001174054	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	0.010000	0.507463	
mm_72333.1	chr8	79028489	79028689	+	1	NA	NA	NA	152	NM_178267	622675	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.020000	0.542289	
mm_75933.1	chr8	71534208	71534408	-	1	NA	NA	NA	3129	NM_198095	69550	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	0.005000	0.467662	
mm_27897.1	chr3	79456924	79457124	-	1	NA	NA	NA	110655	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.010000	0.353234	
mm_90923.1	chr10	12634000	12634200	-	1	NA	NA	NA	227635	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.015000	0.447761	
mm_170418.1	chr18	68692159	68692359	+	1	NA	NA	NA	-47141	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0.060000	0.517413	-51(AACTTTAAATGG,-,0.00)
mm_163972.1	chr14	55510405	55510605	+	1	NA	NA	NA	57	NM_001136057	12891	Mm.5249	NM_009947	ENSMUSG00000022212	Cpne6	AU067659|BB076446	copine VI	protein-coding	0.015000	0.671642	86(CCCCATAAATAG,-,0.00),88(CCATAAATAGCA,+,0.00)
mm_137201.1	chr17	23898620	23898820	+	1	NA	NA	NA	-2	NM_001039238	630537	Mm.436677	NM_001039238	ENSMUSG00000096278	Dcpp2	Dcpp-2|EG630537|SPT-2	demilune cell and parotid protein 2	protein-coding	0.005000	0.572139	-34(AAGCATATAAGG,-,0.00),-32(GCATATAAGGGG,+,0.00)
mm_116769.1	chr13	52843333	52843533	-	1	NA	NA	NA	-86228	NR_027893	105404	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0.025000	0.393035	
mm_16651.1	chr2	6323063	6323263	-	1	NA	NA	NA	406	NM_001080548	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.175000	0.815920	
mm_113157.1	chr13	24802781	24802981	+	1	NA	NA	NA	1224	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.010000	0.402985	
mm_158197.1	chrX	105069978	105070178	-	1	NA	NA	NA	46	NR_015467	71445	Mm.242968	NR_015467	ENSMUSG00000087174	5530601H04Rik	AI835882	RIKEN cDNA 5530601H04 gene	ncRNA	0.055000	0.512438	
mm_95591.1	chr11	53332063	53332263	+	1	NA	NA	NA	7474	NM_026479	67966	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0.015000	0.492537	
mm_50221.1	chr6	42349938	42350138	+	1	NA	NA	NA	210	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.135000	0.736318	
mm_84361.1	chr9	64737558	64737758	-	1	NA	NA	NA	98	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.125000	0.721393	64(CCTCTTTAAAGG,-,0.00),65(CTCTTTAAAGGT,+,0.00),66(TCTTTAAAGGTG,+,0.00)
mm_41721.1	chr5	102481252	102481452	+	1	NA	NA	NA	-39	NM_146161	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.050000	0.671642	
mm_5799.1	chr1	52164571	52164771	-	1	NA	NA	NA	45049	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.010000	0.427861	
mm_150128.1	chr19	30030525	30030725	+	1	NA	NA	NA	112	NM_144873	109113	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0.175000	0.761194	
mm_102777.1	chr11	68386808	68387008	-	1	NA	NA	NA	-82	NM_008744	18208	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0.160000	0.776119	
mm_95385.1	chr11	49211930	49212130	+	1	NA	NA	NA	8530	NM_009562	22720	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0.010000	0.472637	
mm_110554.1	chr12	55491212	55491412	-	1	NA	NA	NA	1335	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.010000	0.507463	
mm_104249.1	chr11	88863728	88863928	-	1	NA	NA	NA	758	NM_001042541	11640	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	0.040000	0.606965	
mm_73270.1	chr8	104540708	104540908	+	1	NA	NA	NA	1	NM_053070	12354	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	0.100000	0.721393	-33(CACTTTAAGAGG,-,0.00),-32(ACTTTAAGAGGC,+,0.00)
mm_163060.1	chr11	65009859	65010059	-	1	NA	NA	NA	30924	NM_023479	68626	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	0.020000	0.597015	-79(GTGTCTAAAAGC,-,0.00)
mm_43223.1	chr5	129787302	129787502	+	1	NA	NA	NA	46	NM_009838	12466	Mm.153159	NM_009838		Cct6a	CCT-zeta|CCT-zeta-1|Cct6|Cctz-1|TCP-1-zeta	chaperonin containing Tcp1, subunit 6a (zeta)	protein-coding	0.100000	0.696517	
mm_31673.1	chr4	62207938	62208138	+	1	NA	NA	NA	164	NM_001290353	22696	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0.020000	0.452736	
mm_86818.1	chr10	20907303	20907503	+	1	NA	NA	NA	-45144	NM_026203	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.010000	0.393035	
mm_172822.1	chr9	15279839	15280039	-	1	NA	NA	NA	-72	NM_144933	234959	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0.100000	0.651741	
mm_162041.1	chr19	57215887	57216087	-	1	NA	NA	NA	45	NM_001290813	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.010000	0.502488	
mm_50549.1	chr6	49047196	49047396	+	1	NA	NA	NA	10778	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.020000	0.442786	
mm_99131.1	chr11	100319793	100319993	+	1	NA	NA	NA	-56	NM_011508	20918	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.095000	0.656716	60(GGCTATATAAGT,-,0.00)
mm_31978.1	chr4	89050144	89050344	+	1	NA	NA	NA	-63	NR_033533	100040617	Mm.171720	NR_033533	ENSMUSG00000085183	Gm12603	OTTMUSG00000007693	predicted gene 12603	ncRNA	0.010000	0.368159	
mm_171019.1	chr2	83978039	83978239	+	1	NA	NA	NA	-36913	NM_027964	71861	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.050000	0.442786	
mm_52544.1	chr6	115933897	115934097	+	1	NA	NA	NA	2070	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.050000	0.577114	
mm_22167.1	chr2	173033533	173033733	-	1	NA	NA	NA	11731	NM_019547	56190	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.045000	0.636816	
mm_146438.1	chr18	84934530	84934730	+	1	NA	NA	NA	-395	NM_015798	50764	Mm.28369	NM_015798	ENSMUSG00000034391	Fbxo15	AU019763|Fbx15|ecat3	F-box protein 15	protein-coding	0.005000	0.467662	
mm_172721.1	chr8	72284060	72284260	-	1	NA	NA	NA	-34902	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.040000	0.378109	
mm_97277.1	chr11	75999909	76000109	+	1	NA	NA	NA	97	NM_198637	74230	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding	0.110000	0.706468	
mm_171322.1	chr3	96360016	96360216	-	1	NA	NA	NA	54717	NR_001579	21748		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	0.055000	0.601990	
mm_171957.1	chr5	8056428	8056628	+	1	NA	NA	NA	-14	NM_001080974	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.140000	0.786070	
mm_30509.1	chr3	158031570	158031770	-	1	NA	NA	NA	84	NM_001093753	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.125000	0.741294	
mm_150769.1	chr19	44280945	44281145	+	1	NA	NA	NA	-12631	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.010000	0.527363	
mm_14144.1	chr2	126552641	126552841	+	1	NA	NA	NA	-283	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0.045000	0.512438	-12(GCGTTTATAAGG,-,0.00)
mm_45500.1	chr5	72264502	72264702	-	1	NA	NA	NA	61259	NM_153389	231287	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.030000	0.492537	
mm_11967.1	chr2	53605038	53605238	+	1	NA	NA	NA	413054	NM_022989	65103	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	0.000000	0.378109	
mm_161861.1	chr18	31885912	31886112	+	1	NA	NA	NA	25891	NM_026006	67158	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	0.010000	0.477612	
mm_26331.1	chr3	142544222	142544422	+	1	NA	NA	NA	13986	NM_145545	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.000000	0.358209	
mm_20408.1	chr2	129299921	129300121	-	1	NA	NA	NA	2651	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.020000	0.417910	
mm_104825.1	chr11	99051385	99051585	-	1	NA	NA	NA	10225	NM_010517	16010	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.020000	0.601990	
mm_136499.1	chr16	96419114	96419314	-	1	NA	NA	NA	24400	NM_008405	16415	Mm.12872	NM_008405	ENSMUSG00000000157	Itgb2l	5033406G21Rik|pactolus	integrin beta 2-like	protein-coding	0.015000	0.402985	
mm_124942.1	chr15	12321415	12321615	+	1	NA	NA	NA	19	NM_025673	66629	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.130000	0.751244	
mm_33314.1	chr4	129070457	129070657	+	1	NA	NA	NA	12286	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.015000	0.447761	
mm_74755.1	chr8	19114734	19114934	-	1	NA	NA	NA	-1	NM_152802	77674	Mm.281961	NM_152802	ENSMUSG00000043787	Defb12	9230103N16Rik|BD-12	defensin beta 12	protein-coding	0.010000	0.407960	
mm_95124.1	chr11	34091120	34091320	+	1	NA	NA	NA	44019	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.025000	0.333333	
mm_82391.1	chr9	14675939	14676139	-	1	NA	NA	NA	-61039	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.025000	0.542289	
mm_70560.1	chr8	13074153	13074353	+	1	NA	NA	NA	13345	NM_025834	66901	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.000000	0.557214	
mm_85748.1	chr9	108578584	108578784	-	1	NA	NA	NA	-14	NM_031392	83669	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	0.090000	0.636816	
mm_127974.1	chr15	12196510	12196710	-	1	NA	NA	NA	-8484	NM_172958	268783	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.040000	0.532338	-62(CCTCATAAAGCA,+,0.00)
mm_168660.1	chr11	88966883	88967083	-	1	NA	NA	NA	-66	NR_003564	217066	Mm.347543	NM_001025564	ENSMUSG00000057534	Gm15698	OTTMUSG00000001305|OTTMUSG00000025408	transcription elongation factor B (SIII), polypeptide 2 pseudogene	pseudo	0.000000	0.457711	9(GGGTATTTAAGA,-,0.00)
mm_70278.1	chr8	3599446	3599646	+	1	NA	NA	NA	12096	NM_001347111	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.005000	0.507463	
mm_104463.1	chr11	95076711	95076911	-	1	NA	NA	NA	0	NM_001306162	16400	Mm.57035	NM_013565	ENSMUSG00000001507	Itga3	AA407068|CD49C|GAPB3	integrin alpha 3	protein-coding	0.095000	0.706468	-37(GCCCCTTTAAGA,-,0.00),-35(CCCTTTAAGAGG,-,0.00),-34(CCTTTAAGAGGC,+,0.00)
mm_19702.1	chr2	103772953	103773153	-	1	NA	NA	NA	-11803	NM_153126	98956	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.015000	0.422886	
mm_49280.1	chr6	17637706	17637906	+	1	NA	NA	NA	708	NM_007604	12343	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.015000	0.487562	
mm_159155.1	chr2	89249486	89249686	-	1	NA	NA	NA	106	NM_146971	258973	Mm.463734	NM_146971	ENSMUSG00000099486	Olfr1228	MOR233-1	olfactory receptor 1228	protein-coding	0.000000	0.383085	
mm_70840.1	chr8	23411186	23411386	+	1	NA	NA	NA	-216	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding	0.040000	0.452736	40(TGCTTTTTAAGG,-,0.00),42(CTTTTTAAGGGG,+,0.00)
mm_113351.1	chr13	31807301	31807501	+	1	NA	NA	NA	755	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.100000	0.666667	
mm_123120.1	chr14	56105037	56105237	-	1	NA	NA	NA	-2563	NM_007800	13035	Mm.4858	NM_007800	ENSMUSG00000040314	Ctsg	CatG|VSP	cathepsin G	protein-coding	0.010000	0.442786	
mm_70708.1	chr8	15058905	15059105	+	1	NA	NA	NA	1352	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.015000	0.477612	
mm_142980.1	chr17	56218802	56219002	-	1	NA	NA	NA	-13	NM_172624	224897	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	0.090000	0.646766	
mm_51800.1	chr6	88724329	88724529	+	1	NA	NA	NA	17	NM_011844	23945	Mm.272197	NM_011844	ENSMUSG00000033174	Mgll	AA589436|Magl|Mgl	monoglyceride lipase	protein-coding	0.165000	0.810945	
mm_13693.1	chr2	117120943	117121143	+	1	NA	NA	NA	-28	NM_001277256	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.175000	0.796020	
mm_6306.1	chr1	71414836	71415036	-	1	NA	NA	NA	-26	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding	0.025000	0.467662	
mm_21653.1	chr2	164334292	164334492	-	1	NA	NA	NA	1627	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.020000	0.427861	
mm_150998.1	chr19	46652631	46652831	+	1	NA	NA	NA	20269	NM_007809	13074	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.010000	0.393035	
mm_90028.1	chr10	115422236	115422436	+	1	NA	NA	NA	37377	NM_001033261	216345	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0.000000	0.358209	
mm_138814.1	chr17	39846784	39846984	+	1	NA	NA	NA	3887	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.055000	0.537313	
mm_149242.1	chr19	10195146	10195346	+	1	NA	NA	NA	3871	NR_105959	102465600		NR_105959	ENSMUSG00000098363	Mir6993	Gm27642|mmu-mir-6993	microRNA 6993	ncRNA	0.005000	0.492537	
mm_39631.1	chr5	24430675	24430875	+	1	NA	NA	NA	3254	NM_001253892	20535	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0.005000	0.542289	
mm_143845.1	chr17	84135296	84135496	-	1	NA	NA	NA	52551	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.025000	0.507463	
mm_119426.1	chr14	45388952	45389152	+	1	NA	NA	NA	-256	NM_019425	54342	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding	0.075000	0.606965	
mm_85446.1	chr9	104262825	104263025	-	1	NA	NA	NA	5	NM_001163026	235567	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.135000	0.746269	
mm_159772.1	chr5	100498478	100498678	-	1	NA	NA	NA	-5	NM_001115010	231506	Mm.212568	NM_172714	ENSMUSG00000035310	Lin54	AI461788	lin-54 homolog (C. elegans)	protein-coding	0.110000	0.696517	
mm_162033.1	chr19	53987343	53987543	+	1	NA	NA	NA	42567	NM_019658	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.010000	0.358209	
mm_102184.1	chr11	54225118	54225318	-	1	NA	NA	NA	-11930	NR_045506	71056	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	0.005000	0.467662	
mm_123456.1	chr14	65425079	65425279	-	1	NA	NA	NA	293	NM_001205075	18155	Mm.16347	NM_010932	ENSMUSG00000045731	Pnoc	N/OFQ|Npnc1|OFQ/N	prepronociceptin	protein-coding	0.035000	0.587065	
mm_167773.1	chr9	111216620	111216820	+	1	NA	NA	NA	54888	NM_026810	17350	Mm.486383	NM_026810	ENSMUSG00000032498	Mlh1	1110035C23Rik|AI317206|AI325952|AI561766	mutL homolog 1	protein-coding	0.000000	0.427861	-32(GCCTCTTAAAGG,-,0.00),-31(CCTCTTAAAGGC,+,0.00),-30(CTCTTAAAGGCC,+,0.00)
mm_158194.1	chrX	104670960	104671160	-	1	NA	NA	NA	4	NM_175358	108672	Mm.30574	NM_175358	ENSMUSG00000033906	Zdhhc15	6030457O13Rik	zinc finger, DHHC domain containing 15	protein-coding	0.035000	0.676617	
mm_168291.1	chr11	102123947	102124147	+	1	NA	NA	NA	-16215	NM_001346771	217212	Mm.46248	NM_145435	ENSMUSG00000017311	Pyy	-	peptide YY	protein-coding	0.030000	0.487562	
mm_102628.1	chr11	62538928	62539128	-	1	NA	NA	NA	233	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.170000	0.820896	
mm_89937.1	chr10	111260045	111260245	+	1	NA	NA	NA	-38534	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.005000	0.308458	
mm_162358.1	chr1	59548777	59548977	+	1	NA	NA	NA	32613	NM_001013771	381260	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0.005000	0.442786	
mm_28607.1	chr3	94658761	94658961	-	1	NA	NA	NA	11	NM_001293728	22156	Mm.10214	NM_011656	ENSMUSG00000005968	Tuft1	-	tuftelin 1	protein-coding	0.115000	0.656716	
mm_122399.1	chr14	41004143	41004343	-	1	NA	NA	NA	2677	NM_001316739	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.020000	0.592040	
mm_85609.1	chr9	107605153	107605353	-	1	NA	NA	NA	149	NM_009153	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.035000	0.631841	
mm_65154.1	chr7	19628572	19628772	-	1	NA	NA	NA	766	NM_001290457	19698	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.030000	0.587065	-72(GGCCTTTAGAGG,-,0.00),-71(GCCTTTAGAGGC,+,0.00)
mm_15869.1	chr2	164833987	164834187	+	1	NA	NA	NA	314	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.065000	0.601990	
mm_7176.1	chr1	92432082	92432282	-	1	NA	NA	NA	32360	NR_105865	102465542		NR_105865	ENSMUSG00000098288	Mir6900	Gm27708|mmu-mir-6900	microRNA 6900	ncRNA	0.005000	0.507463	
mm_121705.1	chr14	15438744	15438944	-	1	NA	NA	NA	143	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding	0.120000	0.716418	
mm_27364.1	chr3	50435334	50435534	-	1	NA	NA	NA	8179	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.422886	
mm_37045.1	chr4	115847356	115847556	-	1	NA	NA	NA	8258	NM_001285487	17346	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0.020000	0.492537	
mm_100303.1	chr11	117878460	117878660	+	1	NA	NA	NA	-5034	NM_027919	71776	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.035000	0.611940	
mm_67847.1	chr7	98656420	98656620	-	1	NA	NA	NA	49	NM_172280	233545	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0.065000	0.631841	16(CCTTTTAGATGA,+,0.00)
mm_139873.1	chr17	70694361	70694561	+	1	NA	NA	NA	132714	NM_001128181	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.015000	0.427861	
mm_14203.1	chr2	127238329	127238529	+	1	NA	NA	NA	9387	NM_025296	26371	Mm.45179	NM_025296	ENSMUSG00000003662	Ciao1	AW210570|Wdr39	cytosolic iron-sulfur protein assembly 1	protein-coding	0.005000	0.487562	
mm_13024.1	chr2	91042458	91042658	+	1	NA	NA	NA	6931	NM_009023	19400	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	0.010000	0.472637	
mm_117026.1	chr13	58215539	58215739	-	1	NA	NA	NA	14	NM_152234	56085	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	0.170000	0.771144	
mm_76579.1	chr8	89007200	89007400	-	1	NA	NA	NA	-17435	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.025000	0.587065	
mm_20394.1	chr2	129180549	129180749	-	1	NA	NA	NA	24	NR_045264	100048701	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	OTTMUSG00000015420	expressed sequence AI847159	ncRNA	0.010000	0.442786	
mm_133638.1	chr16	91676381	91676581	+	1	NA	NA	NA	12247	NM_021720	60364	Mm.328698	NM_021720	ENSMUSG00000022960	Donson	1110025J21Rik|AI845729|ORF60	downstream neighbor of SON	protein-coding	0.005000	0.358209	
mm_21936.1	chr2	167056832	167057032	-	1	NA	NA	NA	-6002	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.010000	0.487562	
mm_62867.1	chr7	114722152	114722352	+	1	NA	NA	NA	3609	NM_054084	116903	Mm.273838	NM_054084	ENSMUSG00000030666	Calcb	CGRP2|Calc2	calcitonin-related polypeptide, beta	protein-coding	0.010000	0.447761	
mm_93880.1	chr10	125308706	125308906	-	1	NA	NA	NA	19729	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.040000	0.527363	
mm_48376.1	chr5	139716322	139716522	-	1	NA	NA	NA	19911	NM_174850	231830	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.035000	0.577114	
mm_94456.1	chr11	6415679	6415879	+	1	NA	NA	NA	-91	NM_008907	268373	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	0.160000	0.721393	56(GGGTATAAAGGA,-,0.00)
mm_93961.1	chr10	127288323	127288523	-	1	NA	NA	NA	595	NM_001347171	110962	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.050000	0.611940	
mm_78572.1	chr9	36693119	36693319	+	1	NA	NA	NA	-1	NM_007391	11451	Mm.4776	NM_007391	ENSMUSG00000032110	Acrv1	Msa63|SP-10	acrosomal vesicle protein 1	protein-coding	0.005000	0.452736	
mm_76505.1	chr8	86883221	86883421	-	1	NA	NA	NA	1937	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.015000	0.552239	
mm_153990.1	chr19	50030424	50030624	-	1	NA	NA	NA	648122	NM_001252501	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.035000	0.547264	
mm_146150.1	chr18	74796916	74797116	+	1	NA	NA	NA	17804	NM_177470	52538	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	0.015000	0.472637	-31(CTCTCTTAAGGG,-,0.00)
mm_98768.1	chr11	96658557	96658757	+	1	NA	NA	NA	118898	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.005000	0.447761	
mm_50665.1	chr6	51524636	51524836	+	1	NA	NA	NA	833	NM_001127349	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.035000	0.567164	
mm_114144.1	chr13	55321922	55322122	+	1	NA	NA	NA	-33	NM_025596	66494	Mm.439805	NM_025596	ENSMUSG00000021486	Prelid1	2610524G07Rik|Preli	PRELI domain containing 1	protein-coding	0.115000	0.681592	
mm_42964.1	chr5	123135525	123135725	+	1	NA	NA	NA	-2996	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.060000	0.661692	
mm_109673.1	chr12	113074670	113074870	+	1	NA	NA	NA	268	NM_029381	75671	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0.040000	0.597015	
mm_36915.1	chr4	108074369	108074569	-	1	NA	NA	NA	-12888	NR_105823	102465213		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	0.005000	0.417910	
mm_144593.1	chr18	32162948	32163148	+	1	NA	NA	NA	-41	NM_011946	26405	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0.165000	0.731343	
mm_123124.1	chr14	56174496	56174696	-	1	NA	NA	NA	3	NM_001305808	245839	Mm.207063	NM_153052	ENSMUSG00000015443	Gzmn	GrN	granzyme N	protein-coding	0.015000	0.383085	71(CTCTCTTAAAGA,-,0.00)
mm_27573.1	chr3	58691990	58692190	-	1	NA	NA	NA	298	NM_009174	20439	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	seven in absentia 2	protein-coding	0.140000	0.741294	
mm_149688.1	chr19	20639970	20640170	+	1	NA	NA	NA	38088	NM_013467	11668	Mm.250866	NM_013467	ENSMUSG00000053279	Aldh1a1	Ahd-2|Ahd2|Aldh1|Aldh1a2|E1|Raldh1	aldehyde dehydrogenase family 1, subfamily A1	protein-coding	0.005000	0.353234	-80(CTTTTTAGACCC,+,0.00)
mm_164851.1	chr18	46525251	46525451	-	1	NA	NA	NA	620	NM_173423	240263	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.085000	0.621891	
mm_99141.1	chr11	100386092	100386292	+	1	NA	NA	NA	11598	NM_010593	16480	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0.010000	0.497512	
mm_67571.1	chr7	81934481	81934681	-	1	NA	NA	NA	-122	NM_013886	29877	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfrp3	2700022B06Rik|HRP-3	hepatoma-derived growth factor, related protein 3	protein-coding	0.135000	0.716418	
mm_20931.1	chr2	150855959	150856159	-	1	NA	NA	NA	48672	NM_024465	76192	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.005000	0.462687	
mm_128904.1	chr15	73422945	73423145	-	1	NA	NA	NA	146	NM_007982	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.180000	0.815920	
mm_140751.1	chr17	16921243	16921443	-	1	NA	NA	NA	-142760	NM_001005358	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	0.035000	0.562189	
mm_43131.1	chr5	125385878	125386078	+	1	NA	NA	NA	4039	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.000000	0.373134	41(CAGCTTAAAAGA,-,0.00)
mm_4770.1	chr1	182522314	182522514	+	1	NA	NA	NA	-4931	NM_009794	12334	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.000000	0.457711	
mm_105095.1	chr11	100939213	100939413	-	1	NA	NA	NA	227	NM_213660	20848	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.105000	0.736318	
mm_54935.1	chr6	48445584	48445784	-	1	NA	NA	NA	141	NM_020589	68910	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	0.045000	0.616915	
mm_79584.1	chr9	58253124	58253324	+	1	NA	NA	NA	60	NM_026942	69106	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.045000	0.597015	
mm_143478.1	chr17	71256808	71257008	-	1	NA	NA	NA	52254	NM_001164885	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.030000	0.542289	
mm_44371.1	chr5	17814096	17814296	-	1	NA	NA	NA	21700	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.363184	
mm_85250.1	chr9	99140087	99140287	-	1	NA	NA	NA	24	NM_029094	74769	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol 3-kinase, catalytic, beta polypeptide	protein-coding	0.160000	0.791045	
mm_149067.1	chr19	8842910	8843110	+	1	NA	NA	NA	2507	NM_001290823	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.015000	0.542289	
mm_71413.1	chr8	46472305	46472505	+	1	NA	NA	NA	1368	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.005000	0.363184	
mm_20244.1	chr2	126498068	126498268	-	1	NA	NA	NA	-6615	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	0.040000	0.537313	-33(GGTCTTTTAAGG,-,0.00),-32(GTCTTTTAAGGG,-,0.00),-31(TCTTTTAAGGGT,+,0.00)
mm_103632.1	chr11	78945811	78946011	-	1	NA	NA	NA	20620	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.020000	0.572139	
mm_102385.1	chr11	58904128	58904328	-	1	NA	NA	NA	-3	NM_011758	22698	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	0.080000	0.651741	
mm_58614.1	chr7	5062112	5062312	+	1	NA	NA	NA	69	NM_001205231	22185	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.125000	0.721393	
mm_38031.1	chr4	133874564	133874764	-	1	NA	NA	NA	67	NM_001285506	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.025000	0.562189	
mm_129447.1	chr15	78560925	78561125	-	1	NA	NA	NA	11758	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.005000	0.497512	
mm_165734.1	chr3	106787920	106788120	-	1	NA	NA	NA	2129	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.005000	0.402985	
mm_154175.1	chr19	58734588	58734788	-	1	NA	NA	NA	5801	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.020000	0.517413	
mm_19659.1	chr2	102968486	102968686	-	1	NA	NA	NA	-66921	NM_001039150	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.010000	0.442786	
mm_72999.1	chr8	93810512	93810712	+	1	NA	NA	NA	-226	NM_010308	14681	Mm.251445	NM_010308	ENSMUSG00000031748	Gnao1	AW050213|Galphao|Gnao|alphaO	guanine nucleotide binding protein, alpha O	protein-coding	0.160000	0.786070	
mm_153050.1	chr19	32102756	32102956	-	1	NA	NA	NA	284	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.020000	0.467662	
mm_122438.1	chr14	45219296	45219496	-	1	NA	NA	NA	29	NM_172597	70561	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.080000	0.636816	
mm_23403.1	chr3	58117022	58117222	+	1	NA	NA	NA	46685	NR_040538	67850	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	0.020000	0.507463	
mm_101570.1	chr11	34227267	34227467	-	1	NA	NA	NA	-19278	NM_023907	14233	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	0.005000	0.393035	24(GCACTTAAAAGA,-,0.00)
mm_119724.1	chr14	53960868	53961068	+	1	NA	NA	NA	292961	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.477612	
mm_112511.1	chr13	8965678	8965878	+	1	NA	NA	NA	12915	NM_177197	320581	Mm.313743	NM_177197	ENSMUSG00000033520	Idi2	4833405L16Rik|IPPI2	isopentenyl-diphosphate delta isomerase 2	protein-coding	0.010000	0.432836	-34(AGGTATAAAAAG,-,0.00)
mm_114964.1	chr13	97088386	97088586	+	1	NA	NA	NA	16843	NM_001100458	320557	Mm.458280	NM_001100458	ENSMUSG00000041817	Fam169a	B230112C05Rik|SLAP75	family with sequence similarity 169, member A	protein-coding	0.005000	0.447761	
mm_73993.1	chr8	120685757	120685957	+	1	NA	NA	NA	17537	NM_001293559	12857	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit IV isoform 1	protein-coding	0.025000	0.572139	
mm_100185.1	chr11	116657425	116657625	+	1	NA	NA	NA	417	NM_001163318	100038570	Mm.390349	NM_001163318	ENSMUSG00000075410	Prcd	Gm11744|OTTMUSG00000003947	progressive rod cone degeneration protein	protein-coding	0.020000	0.601990	
mm_31491.1	chr4	53011801	53012001	+	1	NA	NA	NA	21	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.135000	0.711443	
mm_27653.1	chr3	63964515	63964715	-	1	NA	NA	NA	118	NM_001331067	11416	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	0.080000	0.592040	
mm_930.1	chr1	55406103	55406303	+	1	NA	NA	NA	257	NM_001114663	227120	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.100000	0.656716	
mm_60064.1	chr7	31213205	31213405	+	1	NA	NA	NA	-50431	NM_001310660	100043827		NM_001310660		Scgb2b1	Abpbg1|Gm4677	secretoglobin, family 2B, member 1	protein-coding	0.010000	0.427861	
mm_113305.1	chr13	30750564	30750764	+	1	NA	NA	NA	1431	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.095000	0.621891	
mm_60703.1	chr7	45216583	45216783	+	1	NA	NA	NA	930	NM_001285498	21677	Mm.3019	NM_011565	ENSMUSG00000030796	Tead2	ETF|Etdf|TEAD-2|TEF-4|TEF4	TEA domain family member 2	protein-coding	0.045000	0.666667	
mm_42877.1	chr5	122275341	122275541	+	1	NA	NA	NA	-8957	NM_177242	320717	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0.055000	0.492537	
mm_35407.1	chr4	34756128	34756328	-	1	NA	NA	NA	31	NM_001033255	214568	Mm.297405	NM_001033255	ENSMUSG00000071015	Gm136	-	predicted gene 136	protein-coding	0.000000	0.432836	
mm_169996.1	chr1	71629650	71629850	-	1	NA	NA	NA	23484	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.030000	0.542289	
mm_152371.1	chr19	10203763	10203963	-	1	NA	NA	NA	80	NM_007999	14156	Mm.2952	NM_007999	ENSMUSG00000024742	Fen1	AW538437|FEN-1	flap structure specific endonuclease 1	protein-coding	0.100000	0.621891	
mm_30862.1	chr4	30794848	30795048	+	1	NA	NA	NA	130352	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	0.005000	0.398010	
mm_1865.1	chr1	85199509	85199709	+	1	NA	NA	NA	-2	NM_001081746	665378	Mm.440912	NM_001081746		Gm7609	EG665378	predicted pseudogene 7609	protein-coding	0.005000	0.542289	
mm_371.1	chr1	33975823	33976023	+	1	NA	NA	NA	-35902	NM_133833	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.010000	0.432836	
mm_126053.1	chr15	76949426	76949626	+	1	NA	NA	NA	982	NM_054099	117171	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0.025000	0.432836	
mm_67733.1	chr7	90130051	90130251	-	1	NA	NA	NA	-81	NM_001252523	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.135000	0.756219	
mm_66731.1	chr7	46348954	46349154	-	1	NA	NA	NA	-22349	NR_131190	105447647		NR_131190		Munc	DRReRNA	MyoD upstream noncoding	ncRNA	0.130000	0.751244	
mm_30989.1	chr4	35226133	35226333	+	1	NA	NA	NA	-353	NM_001081343	73205	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585	RIKEN cDNA 3110043O21 gene	protein-coding	0.065000	0.592040	
mm_136373.1	chr16	92825467	92825667	-	1	NA	NA	NA	507	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.035000	0.497512	
mm_148028.1	chr18	69779647	69779847	-	1	NA	NA	NA	-145812	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.035000	0.542289	70(TACTATTAAAAG,-,0.00),72(CTATTAAAAGCC,+,0.00)
mm_169545.1	chr15	102409165	102409365	+	1	NA	NA	NA	2949	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.010000	0.507463	
mm_21529.1	chr2	163644989	163645189	-	1	NA	NA	NA	54	NM_012032	26943	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	0.115000	0.686567	
mm_118428.1	chr14	7957197	7957397	+	1	NA	NA	NA	36885	NM_007870	13421	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.010000	0.562189	
mm_70581.1	chr8	13167230	13167430	+	1	NA	NA	NA	8169	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.005000	0.373134	
mm_103437.1	chr11	75925824	75926024	-	1	NA	NA	NA	-33	NM_001291159	380714	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	0.020000	0.567164	
mm_75598.1	chr8	61732271	61732471	-	1	NA	NA	NA	27727	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.020000	0.472637	
mm_101874.1	chr11	48892061	48892261	-	1	NA	NA	NA	9991	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.010000	0.412935	
mm_18943.1	chr2	76766246	76766446	-	1	NA	NA	NA	91031	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.045000	0.462687	
mm_110828.1	chr12	72628802	72629002	-	1	NA	NA	NA	35926	NM_025522	66375	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.025000	0.572139	
mm_67812.1	chr7	98145376	98145576	-	1	NA	NA	NA	-29	NM_011010	18378	Mm.440368	NM_011010	ENSMUSG00000074006	Omp	-	olfactory marker protein	protein-coding	0.030000	0.616915	
mm_51305.1	chr6	72310628	72310828	+	1	NA	NA	NA	6118	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.010000	0.542289	
mm_88642.1	chr10	79930324	79930524	+	1	NA	NA	NA	3083	NM_001288625	13496	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.015000	0.587065	
mm_16551.1	chr2	181767023	181767223	+	1	NA	NA	NA	94	NM_001171616	17932	Mm.458718	NM_008665	ENSMUSG00000010505	Myt1	Nzf2|Nzf2a|Nzf2b|Nztf2	myelin transcription factor 1	protein-coding	0.040000	0.507463	
mm_62256.1	chr7	99269090	99269290	+	1	NA	NA	NA	844	NM_001043355	17760	Mm.154087	NM_010837	ENSMUSG00000055407	Map6	2810411E12Rik|Map-6|Mtap6|STOP	microtubule-associated protein 6	protein-coding	0.090000	0.701493	
mm_113179.1	chr13	24845054	24845254	+	1	NA	NA	NA	23	NR_131787	210108	Mm.261514	NM_001081051	ENSMUSG00000006711	D130043K22Rik	4930451E12Rik|Kiaa0319	RIKEN cDNA D130043K22 gene	protein-coding	0.100000	0.696517	
mm_44072.1	chr5	148866779	148866979	+	1	NA	NA	NA	61768	NM_153572	231912	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	0.020000	0.492537	
mm_126118.1	chr15	78316953	78317153	+	1	NA	NA	NA	-8937	NM_007780	12983	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.005000	0.393035	
mm_104579.1	chr11	96956107	96956307	-	1	NA	NA	NA	12061	NR_003293	319371	Mm.436865	NR_003293	ENSMUSG00000078700	D030028A08Rik	-	RIKEN cDNA D030028A08 gene	ncRNA	0.035000	0.611940	
mm_124725.1	chr15	6580115	6580315	+	1	NA	NA	NA	368	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.015000	0.502488	-25(GTTTTTAAAACC,+,0.00)
mm_22915.1	chr3	31094603	31094803	+	1	NA	NA	NA	-355	NM_011386	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.155000	0.791045	
mm_111509.1	chr12	99563827	99564027	-	1	NA	NA	NA	86	NR_136760	102639404	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.060000	0.547264	
mm_121142.1	chr14	101898343	101898543	+	1	NA	NA	NA	57820	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.015000	0.462687	-34(GGCTATAAAAAG,-,0.00)
mm_3022.1	chr1	133424215	133424415	+	1	NA	NA	NA	-103	NM_011439	20668	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	0.140000	0.756219	
mm_70964.1	chr8	27023272	27023472	+	1	NA	NA	NA	-427	NM_153592	244373	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.030000	0.447761	-33(AAGTATAAAGGG,-,0.00)
mm_104650.1	chr11	97573952	97574152	-	1	NA	NA	NA	1074	NM_018873	56013	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.055000	0.721393	
mm_103867.1	chr11	83522033	83522233	-	1	NA	NA	NA	-34	NM_001045543	629303	Mm.390417	NM_001045543	ENSMUSG00000018925	Heatr9	Gm11435|OTTMUSG00000000990	HEAT repeat containing 9	protein-coding	0.005000	0.512438	
mm_90267.1	chr10	122678917	122679117	+	1	NA	NA	NA	255	NM_001110218	319468	Mm.489703	NM_176919	ENSMUSG00000034613	Ppm1h	A430075L18Rik|ARHCL1|C030002B11Rik	protein phosphatase 1H (PP2C domain containing)	protein-coding	0.135000	0.771144	
mm_160970.1	chr11	99837761	99837961	-	1	NA	NA	NA	205	NM_001195383	100502865	Mm.476649	NM_001195383	ENSMUSG00000078257	2300003K06Rik	-	RIKEN cDNA 2300003K06 gene	protein-coding	0.015000	0.621891	
mm_80390.1	chr9	75625874	75626074	+	1	NA	NA	NA	242	NM_027309	70082	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	0.155000	0.751244	
mm_143891.1	chr17	84466116	84466316	-	1	NA	NA	NA	-8	NM_183021	240174	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.105000	0.626866	
mm_94830.1	chr11	23306824	23307024	+	1	NA	NA	NA	29	NM_001190401	17847	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.135000	0.741294	
mm_118703.1	chr14	22163367	22163567	+	1	NA	NA	NA	143755	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.015000	0.378109	37(CTGTATAAAAAG,-,0.00)
mm_155782.1	chrX	96456250	96456450	+	1	NA	NA	NA	4	NM_001159627	15203	Mm.277092	NM_010417	ENSMUSG00000031209	Heph	C130006F04Rik|Cpl|mKIAA0698|sla	hephaestin	protein-coding	0.030000	0.522388	
mm_66478.1	chr7	45008802	45009002	-	1	NA	NA	NA	3585	NR_106021	102466218		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0.010000	0.601990	
mm_110861.1	chr12	73444830	73445030	-	1	NA	NA	NA	-35367	NR_046013	380765	Mm.490476	NR_046013		D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0.000000	0.407960	-28(CTTTAAAGAGGG,+,0.00)
mm_72981.1	chr8	92911624	92911824	+	1	NA	NA	NA	10329	NM_027112	69543	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	0.000000	0.472637	-26(ACTTTTAGAGTG,+,0.00)
mm_24391.1	chr3	90265829	90266029	+	1	NA	NA	NA	-585	NM_201407	229541	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0.080000	0.661692	
mm_42703.1	chr5	120076569	120076769	+	1	NA	NA	NA	-39844	NM_028762	74111	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	0.005000	0.452736	
mm_8506.1	chr1	154117752	154117952	-	1	NA	NA	NA	-83335	NM_001204908	100503355	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	ENSMUSG00000066797|Gm10178|Gm203	zinc finger protein 648	protein-coding	0.040000	0.547264	
mm_147253.1	chr18	38631443	38631643	-	1	NA	NA	NA	-30275	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.030000	0.631841	
mm_118966.1	chr14	27622388	27622588	+	1	NA	NA	NA	81	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	0.160000	0.786070	
mm_27633.1	chr3	61364286	61364486	-	1	NA	NA	NA	-121	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.070000	0.661692	
mm_40966.1	chr5	76995755	76995955	+	1	NA	NA	NA	-8200	NM_206935	384185	Mm.451858	NM_206935	ENSMUSG00000063820	Arl9	1700110A09Rik	ADP-ribosylation factor-like 9	protein-coding	0.015000	0.432836	-44(GTCTCTAAAAGT,-,0.00)
mm_110938.1	chr12	76596612	76596812	-	1	NA	NA	NA	-48787	NR_046044	100504549	Mm.440349	NR_046044		AI463170	-	expressed sequence AI463170	ncRNA	0.015000	0.472637	
mm_32734.1	chr4	116596551	116596751	+	1	NA	NA	NA	-79	NM_001037916	622665	Mm.388905	NM_001037916	ENSMUSG00000034035	Ccdc17	-	coiled-coil domain containing 17	protein-coding	0.015000	0.532338	
mm_162636.1	chr1	191224752	191224952	-	1	NA	NA	NA	-41519	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.055000	0.641791	
mm_63652.1	chr7	128748806	128749006	+	1	NA	NA	NA	4036	NM_001029982	207352	Mm.297105	NM_001029982	ENSMUSG00000055319	Sec23ip	D7Ertd373e|p125	Sec23 interacting protein	protein-coding	0.005000	0.542289	
mm_47534.1	chr5	124209360	124209560	-	1	NA	NA	NA	-20265	NR_045369	75927	Mm.410803	NR_045369	ENSMUSG00000090220	Pitpnm2os1	4930568K20Rik	phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 1	ncRNA	0.015000	0.407960	-47(TTCTTTTAAAAG,-,0.00),-46(TCTTTTAAAAGC,+,0.00),-46(TCTTTTAAAAGC,-,0.00),-45(CTTTTAAAAGCT,+,0.00)
mm_91191.1	chr10	21146241	21146441	-	1	NA	NA	NA	14643	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.015000	0.577114	
mm_157427.1	chrX	38564858	38565058	-	1	NA	NA	NA	11238	NM_028288	72584	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	0.075000	0.666667	
mm_167190.1	chr7	142533039	142533239	+	1	NA	NA	NA	22	NM_011288	19935	Mm.12144	NM_011288	ENSMUSG00000037772	Mrpl23	L23mrp|Rpl23|Rpl23l	mitochondrial ribosomal protein L23	protein-coding	0.110000	0.696517	
mm_81263.1	chr9	108023839	108024039	+	1	NA	NA	NA	21291	NM_013785	27399	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0.010000	0.447761	
mm_150188.1	chr19	32665509	32665709	+	1	NA	NA	NA	45604	NM_011864	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.020000	0.412935	55(GACTTTTTAAAG,-,0.00),57(CTTTTTAAAGCT,+,0.00)
mm_70922.1	chr8	25808404	25808604	+	1	NA	NA	NA	30	NM_011485	20845	Mm.293314	NM_011485	ENSMUSG00000031574	Star	AV363654|D8Ertd419e|stARD1	steroidogenic acute regulatory protein	protein-coding	0.025000	0.517413	-32(GCATTTAAGGCA,+,0.00)
mm_65858.1	chr7	29339134	29339334	-	1	NA	NA	NA	35229	NM_013874	29861	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.015000	0.507463	
mm_19093.1	chr2	79370774	79370974	-	1	NA	NA	NA	58114	NM_001048176	228094	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0.030000	0.507463	-31(TTGTATAAAGGG,-,0.00)
mm_29521.1	chr3	116561443	116561643	-	1	NA	NA	NA	-1430	NM_027321	109245	Mm.216027	NM_027321	ENSMUSG00000027961	Lrrc39	2010005E21Rik|9430028I06Rik|Myomasp	leucine rich repeat containing 39	protein-coding	0.040000	0.537313	
mm_92635.1	chr10	80329423	80329623	-	1	NA	NA	NA	-50	NM_008793	18551	Mm.299916	NM_008793	ENSMUSG00000020131	Pcsk4	AI647044|L21221|NEC 3|NEC3|PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding	0.040000	0.646766	
mm_21877.1	chr2	166116962	166117162	-	1	NA	NA	NA	38223	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.045000	0.577114	
mm_40715.1	chr5	65934816	65935016	+	1	NA	NA	NA	-32208	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.015000	0.487562	
mm_32420.1	chr4	107066920	107067120	+	1	NA	NA	NA	32	NM_175471	230582	Mm.44608	NM_175471	ENSMUSG00000028621	Cyb5rl	2810410C14Rik	cytochrome b5 reductase-like	protein-coding	0.055000	0.567164	
mm_24549.1	chr3	93398120	93398320	+	1	NA	NA	NA	4521	NM_009100	20129	Mm.1417	NM_009100	ENSMUSG00000041984	Rptn	-	repetin	protein-coding	0.005000	0.447761	
mm_5630.1	chr1	40398353	40398553	-	1	NA	NA	NA	-31117	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.000000	0.502488	
mm_98579.1	chr11	95713028	95713228	+	1	NA	NA	NA	-374	NR_045780	432396	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	0.195000	0.850746	
mm_68212.1	chr7	104404473	104404673	-	1	NA	NA	NA	-45927	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.010000	0.373134	
mm_19261.1	chr2	84800350	84800550	-	1	NA	NA	NA	1622	NM_019949	56791	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.005000	0.457711	
mm_2354.1	chr1	92934655	92934855	+	1	NA	NA	NA	347	NM_011796	23830	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	0.095000	0.641791	
mm_111866.1	chr12	107991447	107991647	-	1	NA	NA	NA	11867	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.050000	0.417910	
mm_12848.1	chr2	83644436	83644636	+	1	NA	NA	NA	-42	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.160000	0.731343	
mm_48548.1	chr5	142905679	142905879	-	1	NA	NA	NA	975	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.095000	0.641791	-78(CCTTTTATGGTA,+,0.00)
mm_62014.1	chr7	91354123	91354323	+	1	NA	NA	NA	263437	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.278607	
mm_5810.1	chr1	52498844	52499044	-	1	NA	NA	NA	1504	NM_008667	17936	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	0.000000	0.338308	
mm_140775.1	chr17	17876612	17876812	-	1	NA	NA	NA	7227	NM_013521	14293	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0.005000	0.472637	-77(GTCTTTATGGGC,+,0.00),63(CACTTTAAATGC,-,0.00)
mm_125831.1	chr15	74957651	74957851	+	1	NA	NA	NA	2645	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.010000	0.537313	
mm_27447.1	chr3	51964874	51965074	-	1	NA	NA	NA	140032	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.005000	0.398010	
mm_17959.1	chr2	37374567	37374767	-	1	NA	NA	NA	-15335	NM_026176	67466	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	0.000000	0.288557	
mm_100618.1	chr11	121559655	121559855	+	1	NA	NA	NA	-40413	NM_178763	319530	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.010000	0.517413	
mm_79040.1	chr9	46210502	46210702	+	1	NA	NA	NA	-18028	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.030000	0.611940	
mm_155569.1	chrX	77367974	77368174	+	1	NA	NA	NA	107862	NR_035475	100316834		NR_035475	ENSMUSG00000088980	Mir669m-2	mmu-mir-669m-2	microRNA 669m-2	ncRNA	0.000000	0.417910	
mm_43678.1	chr5	138799545	138799745	+	1	NA	NA	NA	-20435	NM_001195128	384244	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0.005000	0.432836	
mm_85251.1	chr9	99158353	99158553	-	1	NA	NA	NA	-18242	NM_029094	74769	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol 3-kinase, catalytic, beta polypeptide	protein-coding	0.005000	0.467662	
mm_108313.1	chr12	79559656	79559856	+	1	NA	NA	NA	262405	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.010000	0.467662	
mm_76222.1	chr8	83572511	83572711	-	1	NA	NA	NA	5853	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.010000	0.547264	
mm_14794.1	chr2	145860798	145860998	+	1	NA	NA	NA	-42343	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.040000	0.547264	
mm_130310.1	chr15	97049991	97050191	-	1	NA	NA	NA	5865	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.030000	0.512438	
mm_38395.1	chr4	138836368	138836568	-	1	NA	NA	NA	4592	NM_001082531	18780	Mm.4675	NM_011108	ENSMUSG00000058908	Pla2g2a	EF|Mom1|Pla2|sPLA2|sPla2-IIA	phospholipase A2, group IIA (platelets, synovial fluid)	protein-coding	0.020000	0.547264	
mm_161983.1	chr19	27427043	27427243	-	1	NA	NA	NA	2765	NM_177474	52874	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e|Kiaa0020	pumilio RNA-binding family member 3	protein-coding	0.005000	0.358209	-96(TACTTTATATGG,-,0.00),-94(CTTTATATGGCA,+,0.00)
mm_147912.1	chr18	65476275	65476475	-	1	NA	NA	NA	45378	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.398010	
mm_143301.1	chr17	65985507	65985707	-	1	NA	NA	NA	-34420	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.000000	0.393035	
mm_106106.1	chr11	116300229	116300429	-	1	NA	NA	NA	6409	NM_016857	53413	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	0.040000	0.562189	
mm_55089.1	chr6	49236430	49236630	-	1	NA	NA	NA	-21576	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.030000	0.492537	
mm_12089.1	chr2	60232423	60232623	+	1	NA	NA	NA	22587	NM_020575	57438	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.005000	0.223881	66(TGCTTTAAAAAA,-,0.00)
mm_129962.1	chr15	85578026	85578226	-	1	NA	NA	NA	-56	NM_001163634	22422	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	0.075000	0.621891	-30(GCCCCTAAGAGG,-,0.00)
mm_78093.1	chr9	18478241	18478441	+	1	NA	NA	NA	-54	NM_028557	73503	Mm.160088	NM_028557	ENSMUSG00000038691	Mbd3l1	1700070G05Rik|1700095H13Rik|Mbd3l	methyl-CpG binding domain protein 3-like 1	protein-coding	0.015000	0.417910	
mm_35056.1	chr4	6355385	6355585	-	1	NA	NA	NA	-10195	NM_016807	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.005000	0.378109	-36(TTCTCTAAAAAG,-,0.00)
mm_145553.1	chr18	60811232	60811432	+	1	NA	NA	NA	-744	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.040000	0.582090	
mm_156132.1	chrX	120718768	120718968	+	1	NA	NA	NA	-405642	NM_001281531	624957		NM_001281531	ENSMUSG00000083616	H2afb3	EG624957|H2A.Bbd3|H2afb3-ps	H2A histone family, member B3	protein-coding	0.000000	0.378109	
mm_75182.1	chr8	36952270	36952470	-	1	NA	NA	NA	72	NM_001194940	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.025000	0.522388	-1(GCATTTAGAGGA,+,0.00)
mm_112838.1	chr13	20826414	20826614	+	1	NA	NA	NA	32401	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.552239	
mm_158198.1	chrX	105070014	105070214	-	1	NA	NA	NA	10	NR_015467	71445	Mm.242968	NR_015467	ENSMUSG00000087174	5530601H04Rik	AI835882	RIKEN cDNA 5530601H04 gene	ncRNA	0.055000	0.487562	
mm_117924.1	chr13	99434010	99434210	-	1	NA	NA	NA	-21284	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.005000	0.407960	
mm_128379.1	chr15	42676815	42677015	-	1	NA	NA	NA	62	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.025000	0.502488	
mm_29604.1	chr3	121206248	121206448	-	1	NA	NA	NA	-34653	NM_025637	66568	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	0.040000	0.487562	
mm_134391.1	chr16	17405737	17405937	-	1	NA	NA	NA	-163	NM_023348	67474	Mm.271992	NM_023348	ENSMUSG00000022765	Snap29	1300018G05Rik|AI891940|AU020222|BB131856|Gs32	synaptosomal-associated protein 29	protein-coding	0.120000	0.776119	
mm_131453.1	chr16	16870737	16870937	+	1	NA	NA	NA	101	NM_011624	21976	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding	0.100000	0.691542	
mm_44934.1	chr5	36376860	36377060	-	1	NA	NA	NA	21179	NM_030889	81840	Mm.34113	NM_030889	ENSMUSG00000029093	Sorcs2	N28137|mKIAA1329	sortilin-related VPS10 domain containing receptor 2	protein-coding	0.015000	0.542289	
mm_14266.1	chr2	128698728	128698928	+	1	NA	NA	NA	-169	NM_008587	17289	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.035000	0.656716	
mm_54738.1	chr6	40999367	40999567	-	1	NA	NA	NA	12	NM_001102660	100040208	Mm.333011	NM_001102660	ENSMUSG00000096525	Gm2663	-	predicted gene 2663	protein-coding	0.000000	0.343284	-47(AGCTATAAAGGA,-,0.00)
mm_160592.1	chr9	70561406	70561606	+	1	NA	NA	NA	18636	NM_025690	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.005000	0.378109	
mm_59349.1	chr7	25659053	25659253	+	1	NA	NA	NA	0	NM_138586	27998	Mm.27853	NM_138586	ENSMUSG00000061286	Exosc5	D7Wsu180e	exosome component 5	protein-coding	0.120000	0.651741	
mm_126282.1	chr15	79209298	79209498	+	1	NA	NA	NA	-19775	NM_008837	18693	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	0.050000	0.606965	
mm_32472.1	chr4	107783611	107783811	+	1	NA	NA	NA	-18548	NR_033496	16975	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0.030000	0.512438	-100(CCTCTTATAGGG,+,0.00),-98(TCTTATAGGGGC,+,0.00)
mm_44081.1	chr5	149144170	149144370	+	1	NA	NA	NA	7	NR_137278	105242579	Mm.445929	NR_137278	ENSMUSG00000107388	Gm42788	-	predicted gene 42788	ncRNA	0.035000	0.562189	
mm_127564.1	chr15	102203999	102204199	+	1	NA	NA	NA	454	NM_001289691	68744	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0.185000	0.786070	
mm_131726.1	chr16	21794288	21794488	+	1	NA	NA	NA	41	NR_037957	100043489	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	0.100000	0.641791	
mm_141033.1	chr17	25273275	25273475	-	1	NA	NA	NA	56	NM_001177610	22196	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|F830028O17Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	0.155000	0.786070	
mm_107346.1	chr12	32820138	32820338	+	1	NA	NA	NA	-97	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.120000	0.761194	
mm_38684.1	chr4	145096732	145096932	-	1	NA	NA	NA	93834	NM_001276502	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.010000	0.477612	
mm_19102.1	chr2	79454289	79454489	-	1	NA	NA	NA	2247	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.075000	0.666667	
mm_156608.1	chrX	153305619	153305819	+	1	NA	NA	NA	67674	NM_173780	245671	Mm.260751	NM_173780	ENSMUSG00000041649	Klf8	A830097P10Rik|BKLF3|ZNF74	Kruppel-like factor 8	protein-coding	0.005000	0.507463	-45(GCTTTAAGACCC,+,0.00)
mm_172784.1	chr9	100073753	100073953	-	1	NA	NA	NA	51553	NR_040763	108970	Mm.390215	NR_040763	ENSMUSG00000101584	4930519F24Rik	-	RIKEN cDNA 4930519F24 gene	ncRNA	0.030000	0.507463	47(GCTTTTCTAGCA,+,0.00)
mm_9780.1	chr1	181211084	181211284	-	1	NA	NA	NA	794	NM_145514	226757	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.090000	0.671642	
mm_46505.1	chr5	105135998	105136198	-	1	NA	NA	NA	3454	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.308458	-94(CCTTTTATAGCC,+,0.00)
mm_26092.1	chr3	136775620	136775820	+	1	NA	NA	NA	105654	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.005000	0.303483	
mm_88571.1	chr10	79669403	79669603	+	1	NA	NA	NA	93	NM_148934	110012	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	0.120000	0.681592	
mm_31937.1	chr4	86575646	86575846	+	1	NA	NA	NA	73	NM_178376	68441	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	0.120000	0.691542	
mm_149262.1	chr19	10554869	10555069	+	1	NA	NA	NA	794	NM_001277861	68642	Mm.31236	NM_026798	ENSMUSG00000024667	Tmem216	1110017C22Rik|2810441K11Rik|4921533J23Rik|A930021F15Rik|AI482550	transmembrane protein 216	protein-coding	0.005000	0.462687	
mm_149398.1	chr19	11389110	11389310	+	1	NA	NA	NA	13722	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.010000	0.437811	
mm_5250.1	chr1	16615404	16615604	-	1	NA	NA	NA	3834	NM_025773	66799	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0.005000	0.358209	78(CCCCTTATATGG,-,0.00),80(CCTTATATGGTT,+,0.00)
mm_120605.1	chr14	70100071	70100271	+	1	NA	NA	NA	26	NM_021328	57784	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0.080000	0.646766	
mm_170941.1	chr2	4954576	4954776	+	1	NA	NA	NA	-21446	NM_001311208	68527	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding	0.010000	0.447761	
mm_151438.1	chr19	57360870	57361070	+	1	NA	NA	NA	-39	NM_145505	226252	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	0.125000	0.791045	
mm_109549.1	chr12	111712326	111712526	+	1	NA	NA	NA	527	NM_001324481	70369	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.010000	0.472637	
mm_102959.1	chr11	69664989	69665189	-	1	NA	NA	NA	1081	NM_001291058	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.025000	0.522388	
mm_127098.1	chr15	97790900	97791100	+	1	NA	NA	NA	6635	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.010000	0.492537	
mm_94057.1	chr10	128297984	128298184	-	1	NA	NA	NA	0	NM_031252	83430	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	0.015000	0.532338	-45(GACCTTAAAAAG,-,0.00),-43(CCTTAAAAAGAG,+,0.00)
mm_6000.1	chr1	58962459	58962659	-	1	NA	NA	NA	10923	NM_172406	70827	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	0.015000	0.472637	14(AGCTAGAAAAGG,-,0.00)
mm_17790.1	chr2	33086176	33086376	-	1	NA	NA	NA	928	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.020000	0.452736	
mm_30806.1	chr4	20041892	20042092	+	1	NA	NA	NA	-60	NM_010281	14590	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0.155000	0.850746	
mm_51665.1	chr6	86333910	86334110	+	1	NA	NA	NA	-31673	NM_025591	66488	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	0.040000	0.442786	
mm_153536.1	chr19	41916809	41917009	-	1	NA	NA	NA	5038	NM_023418	18648	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	0.010000	0.447761	
mm_7462.1	chr1	120476628	120476828	-	1	NA	NA	NA	28356	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.030000	0.467662	
mm_102258.1	chr11	55310973	55311173	-	1	NA	NA	NA	1184	NM_001029988	245827	Mm.339363	NM_001029988	ENSMUSG00000055333	Fat2	EMI2|Fath2|Gm523|mKIAA0811	FAT atypical cadherin 2	protein-coding	0.040000	0.522388	
mm_137075.1	chr17	20965502	20965702	+	1	NA	NA	NA	20148	NM_016891	51792	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	0.010000	0.592040	
mm_62593.1	chr7	105642240	105642440	+	1	NA	NA	NA	1800	NM_019502	14356	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0.005000	0.432836	
mm_49055.1	chr6	5048201	5048401	+	1	NA	NA	NA	144981	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.010000	0.447761	
mm_109297.1	chr12	109559778	109559978	+	1	NA	NA	NA	-3814	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.015000	0.472637	
mm_81664.1	chr9	111021882	111022082	+	1	NA	NA	NA	2690	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.030000	0.497512	
mm_110890.1	chr12	75583334	75583534	-	1	NA	NA	NA	12766	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.000000	0.348259	
mm_43137.1	chr5	125390289	125390489	+	1	NA	NA	NA	-372	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.015000	0.368159	
mm_150215.1	chr19	32975449	32975649	+	1	NA	NA	NA	217972	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.005000	0.447761	
mm_99924.1	chr11	110967929	110968129	+	1	NA	NA	NA	-4	NM_010604	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.015000	0.412935	
mm_81885.1	chr9	119357489	119357689	+	1	NA	NA	NA	208	NM_001199568	102448	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	0.125000	0.726368	
mm_89602.1	chr10	95990183	95990383	+	1	NA	NA	NA	49620	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.005000	0.318408	
mm_166613.1	chr6	71325331	71325531	+	1	NA	NA	NA	2619	NM_009858	12526	Mm.333148	NM_009858	ENSMUSG00000053044	Cd8b1	Cd8b|Ly-3|Ly-C|Lyt-3	CD8 antigen, beta chain 1	protein-coding	0.005000	0.477612	
mm_35686.1	chr4	44025447	44025647	-	1	NA	NA	NA	12897	NM_001290470	12757	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.030000	0.512438	
mm_38161.1	chr4	135216290	135216490	-	1	NA	NA	NA	56370	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.015000	0.487562	
mm_86519.1	chr10	7725972	7726172	+	1	NA	NA	NA	72	NM_011835	23924	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	0.115000	0.681592	-28(CCTTTTAAGAGG,+,0.00),-27(CTTTTAAGAGGG,+,0.00)
mm_66023.1	chr7	30606834	30607034	-	1	NA	NA	NA	5800	NM_026815	109637	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	0.010000	0.537313	
mm_173237.1	chrX	8145587	8145787	-	1	NA	NA	NA	193	NM_001166410	19652	Mm.128512	NM_016809	ENSMUSG00000031167	Rbm3	2600016C11Rik	RNA binding motif protein 3	protein-coding	0.110000	0.616915	
mm_11929.1	chr2	52163627	52163827	+	1	NA	NA	NA	90890	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.010000	0.427861	
mm_140793.1	chr17	19629300	19629500	-	1	NA	NA	NA	-30999	NM_001104564	224572	Mm.469856	NM_001104564	ENSMUSG00000095961	Vmn2r102	EG224572	vomeronasal 2, receptor 102	protein-coding	0.005000	0.492537	48(CCTTTTCAGGCA,+,0.00)
mm_91201.1	chr10	21160802	21161002	-	1	NA	NA	NA	82	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.055000	0.582090	
mm_48207.1	chr5	137600595	137600795	-	1	NA	NA	NA	13	NM_001254762	68929	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	0.065000	0.661692	
mm_58209.1	chr6	143947002	143947202	-	1	NA	NA	NA	4	NM_001347506	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.015000	0.432836	
mm_86844.1	chr10	21571632	21571832	+	1	NA	NA	NA	-21413	NR_027968	67692	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.020000	0.557214	
mm_92522.1	chr10	78591839	78592039	-	1	NA	NA	NA	25	NM_027875	71709	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	0.105000	0.681592	
mm_53651.1	chr6	141137932	141138132	+	1	NA	NA	NA	-111237	NM_018779	54611	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0.015000	0.427861	
mm_8290.1	chr1	143093702	143093902	-	1	NA	NA	NA	-546895	NM_020025	26878	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.015000	0.482587	
mm_6367.1	chr1	72236269	72236469	-	1	NA	NA	NA	-24062	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.055000	0.577114	
mm_66110.1	chr7	31041693	31041893	-	1	NA	NA	NA	46	NM_001111073	18301	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	0.035000	0.636816	
mm_167922.1	chrX	102189306	102189506	-	1	NA	NA	NA	-15	NM_009094	20102	Mm.66	NM_009094	ENSMUSG00000031320	Rps4x	Rps4|Rps4-1	ribosomal protein S4, X-linked	protein-coding	0.070000	0.611940	
mm_44935.1	chr5	36397589	36397789	-	1	NA	NA	NA	450	NM_030889	81840	Mm.34113	NM_030889	ENSMUSG00000029093	Sorcs2	N28137|mKIAA1329	sortilin-related VPS10 domain containing receptor 2	protein-coding	0.130000	0.696517	
mm_102345.1	chr11	58093031	58093231	-	1	NA	NA	NA	-11022	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.025000	0.582090	
mm_83139.1	chr9	40450155	40450355	-	1	NA	NA	NA	5509	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.005000	0.537313	
mm_44701.1	chr5	30588373	30588573	-	1	NA	NA	NA	146	NR_040427	100502829	Mm.39944	NR_040427	ENSMUSG00000053214	Gm9899	ENSMUSG00000053214	predicted gene 9899	ncRNA	0.135000	0.706468	
mm_117785.1	chr13	97034253	97034453	-	1	NA	NA	NA	9	NM_025585	66479	Mm.390629	NM_025585	ENSMUSG00000052075	1700029F12Rik	-	RIKEN cDNA 1700029F12 gene	protein-coding	0.005000	0.452736	10(TGATTTAAAAGG,-,0.00)
mm_96638.1	chr11	69326228	69326428	+	1	NA	NA	NA	70	NM_010599	16499	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0.055000	0.562189	
mm_77303.1	chr8	117423007	117423207	-	1	NA	NA	NA	-29916	NR_106045	102466801		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.015000	0.572139	
mm_154853.1	chrX	20549688	20549888	+	1	NA	NA	NA	-30	NM_009060	19733	Mm.2118	NM_009060	ENSMUSG00000023070	Rgn	AI265316|GNL|SMP30	regucalcin	protein-coding	0.005000	0.482587	-33(TGCCATAAAAAG,-,0.00),-31(CCATAAAAAGCA,+,0.00),48(CTATTTTAAAGG,-,0.00)
mm_82354.1	chr9	14380903	14381103	-	1	NA	NA	NA	239	NM_028013	71946	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0.105000	0.761194	
mm_58948.1	chr7	18646984	18647184	+	1	NA	NA	NA	9641	NM_027403	72242	Mm.326858	NM_027403	ENSMUSG00000070796	Psg21	1600019C01Rik|1600025N01Rik|1600026N13Rik|cea8	pregnancy-specific glycoprotein 21	protein-coding	0.000000	0.512438	
mm_63575.1	chr7	128117738	128117938	+	1	NA	NA	NA	-11730	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.005000	0.432836	
mm_85613.1	chr9	107609098	107609298	-	1	NA	NA	NA	43	NM_001042779	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.020000	0.666667	
mm_43212.1	chr5	129501138	129501338	+	1	NA	NA	NA	7	NM_172276	231769	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor, suppressor of white-apricot homolog (Drosophila)	protein-coding	0.080000	0.562189	
mm_30730.1	chr4	13785001	13785201	+	1	NA	NA	NA	319	NM_009822	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.050000	0.567164	
mm_46768.1	chr5	112269440	112269640	-	1	NA	NA	NA	-7151	NM_001326590	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.045000	0.587065	-38(GGCTATAAGAAC,-,0.00)
mm_158859.1	chrY	897691	897891	+	1	NA	NA	NA	3	NM_011419	20592	Mm.262676	NM_011419	ENSMUSG00000056673	Kdm5d	HY|Jarid1d|Smcy	lysine (K)-specific demethylase 5D	protein-coding	0.035000	0.368159	
mm_39594.1	chr5	23501467	23501667	+	1	NA	NA	NA	67138	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.005000	0.447761	
mm_151482.1	chr19	58676181	58676381	+	1	NA	NA	NA	5916	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.040000	0.537313	
mm_160210.1	chr7	96550072	96550272	+	1	NA	NA	NA	-208208	NR_046043	670727	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	OTTMUSG00000021245	predicted gene 15412	ncRNA	0.075000	0.621891	
mm_157449.1	chrX	42113743	42113943	-	1	NA	NA	NA	-35569	NM_001077712	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.005000	0.427861	-34(GAGTATAAATGC,-,0.00)
mm_87564.1	chr10	56224882	56225082	+	1	NA	NA	NA	3707	NM_001033385	544696	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding	0.000000	0.412935	
mm_66273.1	chr7	37422950	37423150	-	1	NA	NA	NA	346702	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.010000	0.447761	
mm_110903.1	chr12	75735573	75735773	-	1	NA	NA	NA	56	NM_030750	81535	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.185000	0.796020	
mm_62552.1	chr7	102441837	102442037	+	1	NA	NA	NA	242	NM_009103	20133	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.065000	0.552239	
mm_81581.1	chr9	110422419	110422619	+	1	NA	NA	NA	2711	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.000000	0.542289	
mm_147793.1	chr18	61652292	61652492	-	1	NA	NA	NA	-3134	NR_029601	387161		NR_029601	ENSMUSG00000065445	Mir143	Mirn143|mir-143|mmu-mir-143	microRNA 143	ncRNA	0.035000	0.572139	-99(TGCCATATAAGG,-,0.00),-97(CCATATAAGGGC,+,0.00)
mm_115085.1	chr13	102693555	102693755	+	1	NA	NA	NA	97	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.025000	0.517413	
mm_157635.1	chrX	57181383	57181583	-	1	NA	NA	NA	-19154	NR_038463	100502842	Mm.164733	NR_038463	ENSMUSG00000085808	Gm14718	OTTMUSG00000017790	predicted gene 14718	ncRNA	0.015000	0.402985	
mm_40382.1	chr5	52368700	52368900	+	1	NA	NA	NA	4996	NM_011435	20657	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	0.055000	0.636816	
mm_16334.1	chr2	174329930	174330130	+	1	NA	NA	NA	-40	NM_201616	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.160000	0.825871	
mm_100868.1	chr11	5898525	5898725	-	1	NA	NA	NA	157	NM_022879	17898	Mm.46514	NM_022879	ENSMUSG00000020469	Myl7	MLC-2alpha|MLC2a|MYL2A|Mylc2a|RLC-A	myosin, light polypeptide 7, regulatory	protein-coding	0.010000	0.587065	
mm_154556.1	chrM	15549	15749	-	1	NA	NA	NA	NA	NA									0.020000	0.407960	
mm_16187.1	chr2	172977589	172977789	+	1	NA	NA	NA	-2153	NM_012046	26972	Mm.23495	NM_012046	ENSMUSG00000005883	Spo11	AI449549|Spo11a|Spo11b	SPO11 meiotic protein covalently bound to DSB	protein-coding	0.015000	0.582090	
mm_8534.1	chr1	155054707	155054907	-	1	NA	NA	NA	44829	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.015000	0.452736	
mm_31858.1	chr4	78773730	78773930	+	1	NA	NA	NA	179783	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA	0.040000	0.502488	
mm_21311.1	chr2	157098412	157098612	-	1	NA	NA	NA	11457	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.015000	0.582090	
mm_11310.1	chr2	30267284	30267484	+	1	NA	NA	NA	565	NM_001252570	227696	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	0.005000	0.482587	
mm_132218.1	chr16	32630815	32631015	+	1	NA	NA	NA	-13728	NM_001110147	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.000000	0.388060	
mm_74121.1	chr8	123117296	123117496	+	1	NA	NA	NA	22	NM_170684	102278	Mm.36434	NM_170684	ENSMUSG00000034796	Cpne7	AW047065	copine VII	protein-coding	0.135000	0.771144	
mm_17124.1	chr2	24763067	24763267	-	1	NA	NA	NA	-15	NM_007579	12287	Mm.4424	NM_007579	ENSMUSG00000004113	Cacna1b	AW050276|AW060892|AW822256|BIII|Cav2.2|Cchn1a|alpha(1B)	calcium channel, voltage-dependent, N type, alpha 1B subunit	protein-coding	0.130000	0.746269	-37(CCCCTTATAGGG,+,0.00),-37(CCCCTTATAGGG,-,0.00),-35(CCTTATAGGGCG,+,0.00)
mm_163740.1	chr13	119707208	119707408	+	1	NA	NA	NA	16957	NM_001291439	208715	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	0.020000	0.447761	
mm_16891.1	chr2	13218964	13219164	-	1	NA	NA	NA	52351	NM_009105	20163	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.025000	0.467662	
mm_17152.1	chr2	25214520	25214720	-	1	NA	NA	NA	10	NM_028961	74472	Mm.176944	NM_028961	ENSMUSG00000036770	Stpg3	4933433C11Rik	sperm tail PG rich repeat containing 3	protein-coding	0.005000	0.537313	
mm_96400.1	chr11	67250651	67250851	+	1	NA	NA	NA	12939	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.025000	0.467662	
mm_17448.1	chr2	28539665	28539865	-	1	NA	NA	NA	6301	NM_001145836	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.015000	0.532338	
mm_77301.1	chr8	117257929	117258129	-	1	NA	NA	NA	1010	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.030000	0.502488	
mm_109032.1	chr12	104100890	104101090	+	1	NA	NA	NA	-123	NM_172953	268591	Mm.73172	NM_172953	ENSMUSG00000041550	Serpina5	4933415L04|PAI-3|Pci	serine (or cysteine) peptidase inhibitor, clade A, member 5	protein-coding	0.015000	0.467662	84(CCTTTTATCGGG,+,0.00)
mm_138469.1	chr17	35187860	35188060	+	1	NA	NA	NA	480	NM_010734	16988	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	0.010000	0.507463	
mm_133488.1	chr16	90220617	90220817	+	1	NA	NA	NA	-25	NM_011434	20655	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.120000	0.686567	5(GCCTATAAAAGC,-,0.00)
mm_62630.1	chr7	107595151	107595351	+	1	NA	NA	NA	200	NM_008905	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.050000	0.641791	
mm_136886.1	chr17	13010218	13010418	+	1	NA	NA	NA	2479	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.005000	0.412935	-83(TCTTAAATACGG,+,0.00)
mm_167111.1	chr7	114152508	114152708	+	1	NA	NA	NA	-34827	NM_025846	66922	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.000000	0.472637	
mm_53941.1	chr6	5054535	5054735	-	1	NA	NA	NA	139311	NM_011134	18979	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.005000	0.487562	
mm_40848.1	chr5	73380487	73380687	+	1	NA	NA	NA	-25491	NM_181323	231293	Mm.280211	NM_181323	ENSMUSG00000029154	Cwh43	C130090K23Rik|imds-60	cell wall biogenesis 43 C-terminal homolog	protein-coding	0.020000	0.477612	
mm_22966.1	chr3	32529541	32529741	+	1	NA	NA	NA	159	NM_024200	67414	Mm.290414	NM_024200	ENSMUSG00000027668	Mfn1	2310002F04Rik|6330416C07Rik|D3Ertd265e|HR2|mKIAA4032	mitofusin 1	protein-coding	0.125000	0.766169	
mm_106970.1	chr12	8947871	8948071	+	1	NA	NA	NA	42	NM_010770	17182	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0.060000	0.636816	
mm_138365.1	chr17	35000839	35001039	+	1	NA	NA	NA	32	NM_011690	22321	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.145000	0.766169	
mm_40146.1	chr5	35279102	35279302	+	1	NA	NA	NA	636	NM_007418	11553	Mm.57205	NM_007418	ENSMUSG00000045318	Adra2c	Adra-2c|[a]2C|alpha2-C4|alpha2C	adrenergic receptor, alpha 2c	protein-coding	0.170000	0.805970	
mm_104889.1	chr11	99566397	99566597	-	1	NA	NA	NA	133	NM_023511	69473	Mm.158281	NM_023511	ENSMUSG00000047564	Krtap3-1	2310003K17Rik|KAP3.1|KRTAP3.1	keratin associated protein 3-1	protein-coding	0.025000	0.651741	
mm_75036.1	chr8	32454762	32454962	-	1	NA	NA	NA	302967	NR_046039	666589	Mm.367675	NR_046039		Gm8179	EG666589	predicted gene 8179	ncRNA	0.005000	0.323383	
mm_23566.1	chr3	63295461	63295661	+	1	NA	NA	NA	126	NM_001289462	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.100000	0.696517	
mm_81796.1	chr9	115200787	115200987	+	1	NA	NA	NA	81183	NR_029430	111186	Mm.484753	NR_029430		Stmn1-rs1	Lag-rs1|Lap18-rs1	stathmin 1, related sequence 1	pseudo	0.035000	0.447761	
mm_125633.1	chr15	62037927	62038127	+	1	NA	NA	NA	41	NR_003368	19296	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	plasmacytoma variant translocation 1	ncRNA	0.120000	0.721393	
mm_17004.1	chr2	18766960	18767160	-	1	NA	NA	NA	-6198	NR_126079	100041479	Mm.393659	NR_126079	ENSMUSG00000092353	Gm3363	-	predicted gene 3363	ncRNA	0.090000	0.626866	-32(GCTCTTATAAGC,-,0.00)
mm_42980.1	chr5	123228122	123228322	+	1	NA	NA	NA	32	NM_026000	67151	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0.085000	0.616915	
mm_61838.1	chr7	88288849	88289049	+	1	NA	NA	NA	10864	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.005000	0.358209	
mm_88658.1	chr10	79996420	79996620	+	1	NA	NA	NA	-1088	NM_001347081	27403	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.080000	0.631841	-6(CCACTTAAAGGG,+,0.00)
mm_161625.1	chr16	74411013	74411213	-	1	NA	NA	NA	-201	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.045000	0.502488	
mm_113910.1	chr13	49421166	49421366	+	1	NA	NA	NA	43	NM_199056	75678	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	0.130000	0.731343	
mm_127103.1	chr15	97821668	97821868	+	1	NA	NA	NA	-6905	NM_001204281	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.010000	0.567164	
mm_104517.1	chr11	96050136	96050336	-	1	NA	NA	NA	15128	NM_172300	268470	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	0.020000	0.597015	
mm_134776.1	chr16	23976169	23976369	-	1	NA	NA	NA	12343	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.000000	0.507463	
mm_141539.1	chr17	31856502	31856702	-	1	NA	NA	NA	-810	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.030000	0.557214	
mm_16530.1	chr2	181557255	181557455	+	1	NA	NA	NA	-21125	NR_027289	100271841	Mm.438007	NR_027289	ENSMUSG00000010492	Uckl1os	Gm16119|OTTMUSG00000030649	uridine-cytidine kinase 1-like 1, opposite strand	ncRNA	0.015000	0.427861	-59(TGTTATTAAAGG,-,0.00)
mm_160457.1	chr8	107551211	107551411	+	1	NA	NA	NA	67	NR_029553	387158		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0.030000	0.572139	
mm_48464.1	chr5	140829665	140829865	-	1	NA	NA	NA	666	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.035000	0.567164	
mm_115466.1	chr13	119429575	119429775	+	1	NA	NA	NA	773	NM_145457	218693	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0.060000	0.636816	
mm_71842.1	chr8	68904773	68904973	+	1	NA	NA	NA	24318	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.000000	0.348259	
mm_114775.1	chr13	88821614	88821814	+	1	NA	NA	NA	242	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.080000	0.681592	
mm_47721.1	chr5	130013356	130013556	-	1	NA	NA	NA	-10628	NM_010368	110006	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.005000	0.482587	
mm_145849.1	chr18	65450604	65450804	+	1	NA	NA	NA	19707	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.288557	
mm_55727.1	chr6	76210522	76210722	-	1	NA	NA	NA	-1032095	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.005000	0.407960	
mm_15868.1	chr2	164833932	164834132	+	1	NA	NA	NA	259	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.070000	0.606965	
mm_121852.1	chr14	20663562	20663762	-	1	NA	NA	NA	912	NM_001310432	68760	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	0.005000	0.557214	
mm_157719.1	chrX	70344199	70344399	-	1	NA	NA	NA	20786	NM_010498	15931	Mm.233083	NM_010498	ENSMUSG00000035847	Ids	AW214631	iduronate 2-sulfatase	protein-coding	0.005000	0.487562	
mm_40748.1	chr5	66745735	66745935	+	1	NA	NA	NA	-5	NM_001001980	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.135000	0.756219	
mm_82482.1	chr9	18299291	18299491	-	1	NA	NA	NA	7124	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.035000	0.522388	
mm_5046.1	chr1	194620006	194620206	+	1	NA	NA	NA	277	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	0.085000	0.641791	
mm_32128.1	chr4	99037440	99037640	+	1	NA	NA	NA	6586	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.015000	0.492537	
mm_142619.1	chr17	47010321	47010521	-	1	NA	NA	NA	111	NM_146078	224826	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|ENSMUSG00000043296|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0.140000	0.741294	
mm_136439.1	chr16	94526735	94526935	-	1	NA	NA	NA	-206	NM_007834	13185	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	Down syndrome critical region gene 3	protein-coding	0.105000	0.661692	
mm_162714.1	chr10	29357674	29357874	+	1	NA	NA	NA	-61	NM_001284279	68031	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	0.005000	0.437811	
mm_122732.1	chr14	52328361	52328561	-	1	NA	NA	NA	209	NM_015772	50524	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding	0.020000	0.497512	62(CTCCTTTAAAGA,-,0.00),63(TCCTTTAAAGAC,+,0.00)
mm_129574.1	chr15	79733655	79733855	-	1	NA	NA	NA	8781	NM_194342	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.005000	0.557214	
mm_76599.1	chr8	90298307	90298507	-	1	NA	NA	NA	49845	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding	0.010000	0.487562	
mm_42335.1	chr5	114903282	114903482	+	1	NA	NA	NA	6448	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.020000	0.393035	
mm_26465.1	chr3	144155830	144156030	+	1	NA	NA	NA	46402	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.000000	0.567164	
mm_108224.1	chr12	77208196	77208396	+	1	NA	NA	NA	-29808	NM_001252614	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.005000	0.472637	
mm_21438.1	chr2	158610538	158610738	-	1	NA	NA	NA	85	NR_040358	100045469	Mm.143404	NR_040358	ENSMUSG00000086496	Gm14204	OTTMUSG00000015935	predicted gene 14204	ncRNA	0.045000	0.631841	
mm_35702.1	chr4	44167536	44167736	-	1	NA	NA	NA	-98	NM_175201	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.160000	0.796020	
mm_111164.1	chr12	83570828	83571028	-	1	NA	NA	NA	26219	NM_183154	217695	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0.005000	0.388060	
mm_169797.1	chr16	16507095	16507295	+	1	NA	NA	NA	20216	NM_001301818	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.065000	0.656716	
mm_114164.1	chr13	55422331	55422531	+	1	NA	NA	NA	4373	NM_021489	58992	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	0.010000	0.557214	
mm_94642.1	chr11	16914641	16914841	+	1	NA	NA	NA	36541	NR_110421	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.000000	0.388060	31(AGACATAAAAGG,-,0.00)
mm_40147.1	chr5	35361457	35361657	+	1	NA	NA	NA	4	NR_046060	74429	Mm.399502	NR_046060	ENSMUSG00000106762	4930478P22Rik	4933405A14Rik	RIKEN cDNA 4930478P22 gene	ncRNA	0.015000	0.487562	
mm_42569.1	chr5	117161906	117162106	+	1	NA	NA	NA	28418	NM_183306	330177	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.015000	0.368159	
mm_154216.1	chr19	59345130	59345330	-	1	NA	NA	NA	550	NM_001033222	107368	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0.100000	0.676617	
mm_2324.1	chr1	92379532	92379732	+	1	NA	NA	NA	84910	NR_105865	102465542		NR_105865	ENSMUSG00000098288	Mir6900	Gm27708|mmu-mir-6900	microRNA 6900	ncRNA	0.010000	0.457711	
mm_1299.1	chr1	64532796	64532996	+	1	NA	NA	NA	92	NM_001037726	12912	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.110000	0.676617	
mm_102843.1	chr11	69366365	69366565	-	1	NA	NA	NA	2961	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.045000	0.592040	
mm_77626.1	chr8	123982744	123982944	-	1	NA	NA	NA	278	NM_019552	56199	Mm.274243	NM_019552	ENSMUSG00000031974	Abcb10	Abc-me|Abcb12	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding	0.135000	0.791045	
mm_18276.1	chr2	52399695	52399895	-	1	NA	NA	NA	25079	NM_182994	75423	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.010000	0.432836	
mm_151583.1	chr19	61224481	61224681	+	1	NA	NA	NA	3837	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.015000	0.462687	
mm_67182.1	chr7	73816350	73816550	-	1	NA	NA	NA	53	NR_077222	100579147	Mm.109205	NR_077222	ENSMUSG00000074067	Gm10619	4932443D20|ENSMUSG00000074067	predicted gene 10619	ncRNA	0.020000	0.522388	
mm_20542.1	chr2	131067209	131067409	-	1	NA	NA	NA	-3495	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.000000	0.422886	
mm_131733.1	chr16	21896369	21896569	+	1	NA	NA	NA	4500	NM_172821	71751	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0.025000	0.427861	
mm_30615.1	chr4	8461344	8461544	+	1	NA	NA	NA	-74200	NM_021518	59021	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0.030000	0.427861	
mm_95542.1	chr11	52299713	52299913	+	1	NA	NA	NA	-16799	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.025000	0.572139	
mm_156457.1	chrX	142825579	142825779	+	1	NA	NA	NA	86679	NR_030523	723976		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	0.000000	0.422886	
mm_110541.1	chr12	55302673	55302873	-	1	NA	NA	NA	136	NM_025373	66132	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	0.065000	0.522388	
mm_166789.1	chr6	145276213	145276413	-	1	NA	NA	NA	25761	NR_045598	100039495	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	OTTMUSG00000025463	predicted gene 15706	ncRNA	0.055000	0.601990	
mm_107651.1	chr12	52607541	52607741	+	1	NA	NA	NA	-5319	NR_045910	73278	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0.020000	0.437811	
mm_153102.1	chr19	32739648	32739848	-	1	NA	NA	NA	-17829	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.030000	0.507463	
mm_119879.1	chr14	54883482	54883682	+	1	NA	NA	NA	157	NM_007537	12050	Mm.6967	NM_007537	ENSMUSG00000089682	Bcl2l2	AW048834|Bcl-w|Gtrgal2|Gtrosa41|bclw|c98	BCL2-like 2	protein-coding	0.060000	0.636816	
mm_112252.1	chr12	113702557	113702757	-	1	NA	NA	NA	158749	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.015000	0.517413	
mm_81002.1	chr9	103426526	103426726	+	1	NA	NA	NA	3048	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.030000	0.606965	
mm_13352.1	chr2	103073612	103073812	+	1	NA	NA	NA	37	NM_019735	56369	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	0.090000	0.641791	
mm_90711.1	chr10	4386891	4387091	-	1	NA	NA	NA	1117	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.195000	0.830846	
mm_130771.1	chr15	101418284	101418484	-	1	NA	NA	NA	5981	NM_033073	110310	Mm.486285	NM_033073	ENSMUSG00000023039	Krt7	D15Wsu77e|K7|Krt2-7	keratin 7	protein-coding	0.025000	0.572139	
mm_63780.1	chr7	131560624	131560824	+	1	NA	NA	NA	230	NM_001317350	12237	Mm.927	NM_009774	ENSMUSG00000066979	Bub3	AU019800|AU021329|AU043350|AW146323|C78067	BUB3 mitotic checkpoint protein	protein-coding	0.065000	0.577114	
mm_13328.1	chr2	102784320	102784520	+	1	NA	NA	NA	77982	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.010000	0.427861	
mm_77375.1	chr8	119834137	119834337	-	1	NA	NA	NA	6342	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.000000	0.527363	
mm_85031.1	chr9	88476593	88476793	-	1	NA	NA	NA	5704	NM_019666	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.005000	0.303483	
mm_19771.1	chr2	105675191	105675391	-	1	NA	NA	NA	-453	NM_001244200	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.105000	0.671642	
mm_169855.1	chr16	3345234	3345434	+	1	NA	NA	NA	-247064	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.005000	0.452736	
mm_51214.1	chr6	71352892	71353092	+	1	NA	NA	NA	-20435	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.010000	0.502488	-1(CTTTCTAAAAGC,-,0.00)
mm_49830.1	chr6	37870614	37870814	+	1	NA	NA	NA	-97	NM_001272064	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.140000	0.776119	
mm_34054.1	chr4	138304633	138304833	+	1	NA	NA	NA	-5	NM_007838	13200	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	0.110000	0.691542	
mm_119773.1	chr14	54176114	54176314	+	1	NA	NA	NA	77715	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.452736	
mm_1412.1	chr1	67156112	67156312	+	1	NA	NA	NA	33185	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.010000	0.507463	
mm_21399.1	chr2	157571341	157571541	-	1	NA	NA	NA	-5080	NM_016916	53619	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0.005000	0.507463	
mm_95905.1	chr11	58204848	58205048	+	1	NA	NA	NA	5392	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.010000	0.492537	
mm_11391.1	chr2	31453694	31453894	+	1	NA	NA	NA	-16476	NM_007494	11898	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.015000	0.606965	
mm_135096.1	chr16	34958775	34958975	-	1	NA	NA	NA	-11	NR_045722	278725	Mm.436927	NR_045722		E130310I04Rik	A930019C19Rik	RIKEN cDNA E130310I04 gene	ncRNA	0.025000	0.552239	
mm_16843.1	chr2	11502009	11502209	-	1	NA	NA	NA	-19	NM_001177757	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.080000	0.661692	35(GATCTTAAAAGG,-,0.00),37(TCTTAAAAGGCC,+,0.00)
mm_109674.1	chr12	113074689	113074889	+	1	NA	NA	NA	287	NM_029381	75671	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0.035000	0.601990	
mm_35301.1	chr4	22488361	22488561	-	1	NA	NA	NA	-95	NM_008899	18992	Mm.129387	NM_008899	ENSMUSG00000095139	Pou3f2	9430075J19Rik|A230098E07Rik|Brn-2|Brn2|OTF-7|Otf7|oct-7	POU domain, class 3, transcription factor 2	protein-coding	0.090000	0.691542	
mm_80683.1	chr9	91368259	91368459	+	1	NA	NA	NA	-613	NM_009576	22774	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.005000	0.477612	
mm_155864.1	chrX	101383634	101383834	+	1	NA	NA	NA	2	NM_001302497	14618	Mm.21198	NM_008124	ENSMUSG00000047797	Gjb1	Cnx32|Cx32|connexin-32	gap junction protein, beta 1	protein-coding	0.040000	0.557214	
mm_36397.1	chr4	77787071	77787271	-	1	NA	NA	NA	424724	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.005000	0.358209	
mm_141660.1	chr17	33760276	33760476	-	1	NA	NA	NA	110	NM_008997	19326	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0.100000	0.671642	16(GCCTTTAGACCG,+,0.00)
mm_121597.1	chr14	7994125	7994325	-	1	NA	NA	NA	-43	NM_007870	13421	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.005000	0.512438	-8(TGGCTTTTAAGG,-,0.00),-7(GGCTTTTAAGGA,-,0.00),-6(GCTTTTAAGGAG,+,0.00)
mm_51557.1	chr6	83351142	83351342	+	1	NA	NA	NA	1758	NM_175277	78653	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0.040000	0.606965	
mm_315.1	chr1	24611921	24612121	+	1	NA	NA	NA	-24584	NM_007733	12823	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.020000	0.338308	
mm_136377.1	chr16	92825706	92825906	-	1	NA	NA	NA	268	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.010000	0.432836	
mm_111825.1	chr12	106716256	106716456	-	1	NA	NA	NA	-32	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.025000	0.507463	
mm_167450.1	chr8	122694120	122694320	+	1	NA	NA	NA	4889	NM_009824	12398	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0.010000	0.562189	
mm_71212.1	chr8	40890646	40890846	+	1	NA	NA	NA	28379	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.010000	0.417910	
mm_45176.1	chr5	51553775	51553975	-	1	NA	NA	NA	46	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.010000	0.517413	
mm_118942.1	chr14	27335548	27335748	+	1	NA	NA	NA	-389	NM_001289687	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.020000	0.442786	
mm_48298.1	chr5	138263865	138264065	-	1	NA	NA	NA	-80	NR_045821	69004	Mm.439868	NR_045821	ENSMUSG00000085227	6330418K02Rik	-	RIKEN cDNA 6330418K02 gene	ncRNA	0.095000	0.696517	
mm_104893.1	chr11	99583579	99583779	-	1	NA	NA	NA	-2	NM_001039502	629873	Mm.423246	NM_001039502	ENSMUSG00000075567	Krtap1-4	OTTMUSG00000004966	keratin associated protein 1-4	protein-coding	0.015000	0.447761	
mm_161387.1	chr14	76488462	76488662	+	1	NA	NA	NA	126	NM_001177751	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.015000	0.502488	-55(TTTTATAAAAGC,-,0.00)
mm_27330.1	chr3	50377548	50377748	-	1	NA	NA	NA	65965	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.025000	0.472637	
mm_108855.1	chr12	98628121	98628321	+	1	NA	NA	NA	79	NM_001289574	104871	Mm.210053	NM_178914	ENSMUSG00000021007	Spata7	AI661438|B230306G18Rik|HSD3	spermatogenesis associated 7	protein-coding	0.080000	0.616915	
mm_7229.1	chr1	93425202	93425402	-	1	NA	NA	NA	20399	NM_001301364	110611	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0.040000	0.577114	
mm_47732.1	chr5	130172325	130172525	-	1	NA	NA	NA	606	NM_001199059	56715	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.030000	0.532338	50(TTCCATAAAAGG,-,0.00)
mm_12487.1	chr2	71644208	71644408	+	1	NA	NA	NA	-75109	NR_037979	381371	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	0.010000	0.532338	
mm_100046.1	chr11	115163241	115163441	+	1	NA	NA	NA	0	NM_012030	26941	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0.105000	0.671642	
mm_98149.1	chr11	87592875	87593075	+	1	NA	NA	NA	758	NM_133215	170749	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0.005000	0.542289	
mm_28180.1	chr3	88000800	88001000	-	1	NA	NA	NA	-544	NM_001109758	12032	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0.030000	0.636816	
mm_111923.1	chr12	108882655	108882855	-	1	NA	NA	NA	10443	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.035000	0.577114	
mm_119474.1	chr14	47310587	47310787	+	1	NA	NA	NA	12373	NM_178684	218975	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	0.020000	0.616915	
mm_141778.1	chr17	34293327	34293527	-	1	NA	NA	NA	-5656	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.025000	0.388060	
mm_17986.1	chr2	37843835	37844035	-	1	NA	NA	NA	67686	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.005000	0.378109	
mm_117083.1	chr13	59675684	59675884	-	1	NA	NA	NA	0	NM_001035122	105348	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0.150000	0.786070	
mm_131355.1	chr16	13703007	13703207	+	1	NA	NA	NA	-26729	NR_040574	76684	Mm.491043	NR_040574		Pla2g10os	1810007I06Rik	phospholipase A2, group X, opposite strand	ncRNA	0.010000	0.412935	
mm_48492.1	chr5	142608697	142608897	-	1	NA	NA	NA	-45	NM_175217	75104	Mm.48712	NM_175217	ENSMUSG00000039533	Mmd2	4930518M15Rik|C88001	monocyte to macrophage differentiation-associated 2	protein-coding	0.075000	0.701493	
mm_35442.1	chr4	40214261	40214461	-	1	NA	NA	NA	25464	NM_172689	230073	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.000000	0.253731	
mm_140542.1	chr17	6785351	6785551	-	1	NA	NA	NA	-2671	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.015000	0.487562	
mm_143238.1	chr17	63500254	63500454	-	1	NA	NA	NA	226	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.180000	0.810945	
mm_66417.1	chr7	44529552	44529752	-	1	NA	NA	NA	2419	NM_019866	272382	Mm.8012	NM_019866	ENSMUSG00000008193	Spib	Spi-B	Spi-B transcription factor (Spi-1/PU.1 related)	protein-coding	0.015000	0.582090	
mm_24649.1	chr3	94388172	94388372	+	1	NA	NA	NA	10840	NR_121656	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.010000	0.606965	
mm_23907.1	chr3	83032028	83032228	+	1	NA	NA	NA	5975	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.020000	0.422886	
mm_144596.1	chr18	32240226	32240426	+	1	NA	NA	NA	-5	NM_133658	13872	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	0.080000	0.582090	
mm_134982.1	chr16	32099528	32099728	-	1	NA	NA	NA	99	NM_001111025	72084	Mm.37613	NM_024464	ENSMUSG00000023791	Pigx	2010319C14Rik|PIG-X	phosphatidylinositol glycan anchor biosynthesis, class X	protein-coding	0.095000	0.661692	
mm_95405.1	chr11	49846682	49846882	+	1	NA	NA	NA	31	NM_016961	26420	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0.120000	0.706468	
mm_82187.1	chr9	123938128	123938328	+	1	NA	NA	NA	30464	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.005000	0.383085	10(GTTTCTTAAAGG,-,0.00)
mm_172121.1	chr6	3201120	3201320	+	1	NA	NA	NA	-87299	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.090000	0.606965	
mm_38348.1	chr4	137769896	137770096	-	1	NA	NA	NA	-3521	NM_001287172	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.015000	0.597015	
mm_127037.1	chr15	96638401	96638601	+	1	NA	NA	NA	3461	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.025000	0.487562	
mm_91279.1	chr10	24692352	24692552	-	1	NA	NA	NA	19707	NM_001308327	18605	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	0.005000	0.442786	
mm_149353.1	chr19	10895323	10895523	+	1	NA	NA	NA	192	NM_001253843	28000	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	0.115000	0.721393	
mm_144875.1	chr18	36753344	36753544	+	1	NA	NA	NA	-6795	NM_026464	67936	Mm.271719	NM_026464	ENSMUSG00000042660	Wdr55	2410080P20Rik|C80692	WD repeat domain 55	protein-coding	0.045000	0.482587	
mm_98339.1	chr11	93097947	93098147	+	1	NA	NA	NA	-1243	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	0.030000	0.552239	50(ACCCTTAAAAGA,-,0.00),51(CCCTTAAAAGAG,+,0.00)
mm_26573.1	chr3	146618570	146618770	+	1	NA	NA	NA	-3072	NM_019957	56629	Mm.25853	NM_019957	ENSMUSG00000028185	Dnase2b	AI526873|Dlad|DnaseIIb	deoxyribonuclease II beta	protein-coding	0.000000	0.427861	
mm_67758.1	chr7	92669830	92670030	-	1	NA	NA	NA	-18	NM_029078	74737	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	0.100000	0.661692	
mm_120062.1	chr14	56886487	56886687	+	1	NA	NA	NA	-1208	NM_029498	76007	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.110000	0.731343	
mm_87353.1	chr10	43603285	43603485	+	1	NA	NA	NA	9958	NR_033558	414125	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	0.005000	0.432836	
mm_136758.1	chr17	8782164	8782364	+	1	NA	NA	NA	-19481	NM_011866	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.010000	0.457711	
mm_101513.1	chr11	32347629	32347829	-	1	NA	NA	NA	-82	NM_177364	268396	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.150000	0.805970	-35(CTGCTTAAAGGG,-,0.00),-33(GCTTAAAGGGCC,+,0.00)
mm_74472.1	chr8	4258247	4258447	-	1	NA	NA	NA	927	NM_183315	330695	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	0.070000	0.616915	
mm_80101.1	chr9	70317094	70317294	+	1	NA	NA	NA	88559	NR_049200	100885839		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0.005000	0.388060	
mm_160046.1	chr6	145808504	145808704	+	1	NA	NA	NA	221	NM_027760	71323	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.015000	0.487562	
mm_11962.1	chr2	53132718	53132918	+	1	NA	NA	NA	58369	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.005000	0.323383	
mm_112052.1	chr12	111713102	111713302	-	1	NA	NA	NA	54	NM_027404	70369	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.170000	0.731343	
mm_96360.1	chr11	67078200	67078400	+	1	NA	NA	NA	0	NM_001099635	17883	Mm.340090	NM_001099635	ENSMUSG00000020908	Myh3	MyHC-emb|Myhs-e|Myhse	myosin, heavy polypeptide 3, skeletal muscle, embryonic	protein-coding	0.005000	0.497512	-32(GCCTATAAAAGC,-,0.00)
mm_1673.1	chr1	74792047	74792247	+	1	NA	NA	NA	128	NM_009518	22409	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0.085000	0.736318	
mm_67123.1	chr7	70361664	70361864	-	1	NA	NA	NA	-1171	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.090000	0.597015	-73(TGCCTTATAAGG,-,0.00),-71(CCTTATAAGGCG,+,0.00),-9(CACTATATAGAG,-,0.00)
mm_106370.1	chr11	118398435	118398635	-	1	NA	NA	NA	3396	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.045000	0.592040	
mm_62193.1	chr7	97696585	97696785	+	1	NA	NA	NA	28	NM_023671	12729	Mm.21482	NM_023671	ENSMUSG00000025439	Clns1a	2610036D06Rik|2610100O04Rik|Clci|Clcni|ICLN	chloride channel, nucleotide-sensitive, 1A	protein-coding	0.105000	0.616915	
mm_42221.1	chr5	113340078	113340278	+	1	NA	NA	NA	-2533	NR_106089	102466821		NR_106089	ENSMUSG00000104840	Mir7230	mmu-mir-7230	microRNA 7230	ncRNA	0.020000	0.582090	
mm_126893.1	chr15	89497959	89498159	+	1	NA	NA	NA	-1798	NM_021423	58234	Mm.146855	NM_021423	ENSMUSG00000022623	Shank3	AI841104|SHANK3c-3|SHANK3c-4|Shank3b	SH3/ankyrin domain gene 3	protein-coding	0.020000	0.597015	41(GGTTTTTTAAGG,-,0.00)
mm_112526.1	chr13	9276592	9276792	+	1	NA	NA	NA	167	NM_001081426	208440	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.120000	0.756219	
mm_56819.1	chr6	116716806	116717006	-	1	NA	NA	NA	-148	NM_178768	319776	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.030000	0.577114	
mm_165428.1	chr2	152911564	152911764	+	1	NA	NA	NA	312	NM_001081044	228785	Mm.250604	NM_001081044	ENSMUSG00000027470	Mylk2	9830004H17Rik|BB138278	myosin, light polypeptide kinase 2, skeletal muscle	protein-coding	0.010000	0.577114	
mm_10431.1	chr2	14074019	14074219	+	1	NA	NA	NA	7	NM_011484	20844	Mm.273174	NM_011484	ENSMUSG00000026718	Stam	STAM1	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1	protein-coding	0.080000	0.696517	
mm_101138.1	chr11	14120322	14120522	-	1	NA	NA	NA	58619	NR_131011	75280	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	0.005000	0.358209	
mm_74206.1	chr8	123893136	123893336	+	1	NA	NA	NA	1539	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.050000	0.587065	
mm_32048.1	chr4	97581605	97581805	+	1	NA	NA	NA	-238	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.000000	0.417910	-75(CTCCTTAAAAAA,-,0.00)
mm_113542.1	chr13	37872942	37873142	+	1	NA	NA	NA	-15392	NR_033218	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.005000	0.502488	
mm_139213.1	chr17	47728710	47728910	+	1	NA	NA	NA	1968	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.015000	0.497512	
mm_109106.1	chr12	105337065	105337265	+	1	NA	NA	NA	172	NR_125773	69952	Mm.158311	NR_045047	ENSMUSG00000097929	Tunar	2810011L19Rik|Tuna	Tcl1 upstream neural differentiation associated RNA	ncRNA	0.125000	0.731343	
mm_128164.1	chr15	34068146	34068346	-	1	NA	NA	NA	-14473	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.010000	0.487562	
mm_65298.1	chr7	24587539	24587739	-	1	NA	NA	NA	2	NM_001033205	101544	Mm.20117	NM_001033205	ENSMUSG00000066721	Zfp575	AI326876|Znf575	zinc finger protein 575	protein-coding	0.065000	0.661692	
mm_64947.1	chr7	16370301	16370501	-	1	NA	NA	NA	17495	NM_001285892	56459	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	0.015000	0.492537	
mm_121003.1	chr14	79515601	79515801	+	1	NA	NA	NA	27	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.015000	0.442786	
mm_46763.1	chr5	112252357	112252557	-	1	NA	NA	NA	61	NM_001312884	12959	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0.010000	0.522388	-95(GCCTATAAGAGC,-,0.00)
mm_65265.1	chr7	19935347	19935547	-	1	NA	NA	NA	-14304	NM_027514	52118	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.040000	0.522388	
mm_30211.1	chr3	144889676	144889876	-	1	NA	NA	NA	6235	NR_126537	622139	Mm.447150	NM_001039222	ENSMUSG00000074196	Clca4c-ps	Clca4c|EG622139|Gm18718|Gm6289	chloride channel accessory 4C, pseudogene	pseudo	0.000000	0.492537	
mm_42183.1	chr5	112263468	112263668	+	1	NA	NA	NA	7748	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.035000	0.597015	
mm_11301.1	chr2	30171461	30171661	+	1	NA	NA	NA	37	NM_007931	13804	Mm.474473	NM_007931	ENSMUSG00000015337	Endog	-	endonuclease G	protein-coding	0.100000	0.691542	-83(CGTCTTAAAAGG,-,0.00),-81(TCTTAAAAGGGC,+,0.00)
mm_42033.1	chr5	108388308	108388508	+	1	NA	NA	NA	35	NM_008806	18587	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0.015000	0.537313	
mm_127093.1	chr15	97786810	97787010	+	1	NA	NA	NA	2545	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.015000	0.537313	
mm_112374.1	chr12	119210353	119210553	-	1	NA	NA	NA	27823	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.010000	0.477612	-34(CTCTTTTAAAAG,-,0.00),-33(TCTTTTAAAAGG,+,0.00),-33(TCTTTTAAAAGG,-,0.00),-32(CTTTTAAAAGGG,+,0.00)
mm_132413.1	chr16	35068424	35068624	+	1	NA	NA	NA	46103	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.000000	0.402985	
mm_78200.1	chr9	21368416	21368616	+	1	NA	NA	NA	-16	NM_001277322	16201	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.065000	0.587065	
mm_55441.1	chr6	67037286	67037486	-	1	NA	NA	NA	21	NM_007836	13197	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.075000	0.686567	
mm_162161.1	chrX	94235156	94235356	+	1	NA	NA	NA	326	NM_001039061	236904	Mm.115533	NM_153165	ENSMUSG00000043929	Klhl15	6330500C13Rik	kelch-like 15	protein-coding	0.130000	0.706468	
mm_89998.1	chr10	112269919	112270119	+	1	NA	NA	NA	-1104	NM_001025581	268345	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0.030000	0.582090	-81(GCTTAAAGAGTG,+,0.00)
mm_168860.1	chr12	28631547	28631747	-	1	NA	NA	NA	4306	NM_011300	20115	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	0.015000	0.457711	
mm_91015.1	chr10	15521423	15521623	-	1	NA	NA	NA	-270254	NR_131087	77538	Mm.128235	NR_131087		C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0.020000	0.393035	
mm_119500.1	chr14	47380138	47380338	+	1	NA	NA	NA	6378	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.005000	0.661692	
mm_147409.1	chr18	44662228	44662428	-	1	NA	NA	NA	-62	NM_001085374	328949	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0.050000	0.601990	
mm_107337.1	chr12	32378820	32379020	+	1	NA	NA	NA	131	NM_001162903	72123	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.175000	0.796020	
mm_119525.1	chr14	47569308	47569508	+	1	NA	NA	NA	-974	NM_172599	100504663	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	0.065000	0.552239	
mm_60381.1	chr7	44473496	44473696	+	1	NA	NA	NA	3249	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.010000	0.611940	
mm_15211.1	chr2	154214005	154214205	+	1	NA	NA	NA	-9637	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.020000	0.542289	
mm_104606.1	chr11	97187743	97187943	-	1	NA	NA	NA	49	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.085000	0.706468	
mm_118511.1	chr14	14067778	14067978	+	1	NA	NA	NA	53026	NM_025550	66413	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0.015000	0.557214	
mm_154599.1	chrX	7593357	7593557	+	1	NA	NA	NA	11963	NM_138603	54638	Mm.288192	NM_138603	ENSMUSG00000031143	Ccdc22	AI481216|DXImx40e|Ppp1r3f|Sfc22	coiled-coil domain containing 22	protein-coding	0.010000	0.462687	
mm_102775.1	chr11	68386751	68386951	-	1	NA	NA	NA	-25	NM_008744	18208	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0.170000	0.796020	
mm_116887.1	chr13	55211464	55211664	-	1	NA	NA	NA	1782	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.110000	0.751244	
mm_88320.1	chr10	75564089	75564289	+	1	NA	NA	NA	-3859	NM_198860	192734	Mm.259320	NM_198860	ENSMUSG00000046807	Lrrc75b	AI646023|Fam211b	leucine rich repeat containing 75B	protein-coding	0.010000	0.507463	
mm_3321.1	chr1	137916477	137916677	+	1	NA	NA	NA	-49878	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.005000	0.363184	
mm_24982.1	chr3	96832062	96832262	+	1	NA	NA	NA	-92	NR_015596	67583	Mm.444284	NR_015596	ENSMUSG00000087223	4930442L01Rik	-	RIKEN cDNA 4930442L01 gene	ncRNA	0.030000	0.502488	-89(ACGTCTTAAAGG,-,0.00)
mm_22879.1	chr3	29377758	29377958	+	1	NA	NA	NA	-38965	NR_030422	791072		NR_030422	ENSMUSG00000076120	Mir551b	Mirn551b|mir-551b	microRNA 551b	ncRNA	0.005000	0.388060	
mm_168892.1	chr12	47954748	47954948	+	1	NA	NA	NA	346614	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0.020000	0.442786	-29(CCCTATAAAAAC,-,0.00)
mm_167592.1	chr9	46241360	46241560	+	1	NA	NA	NA	616	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.010000	0.532338	
mm_172615.1	chr8	19694908	19695108	+	1	NA	NA	NA	-34568	NM_001270553	100861668	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.005000	0.462687	
mm_60022.1	chr7	30831103	30831303	+	1	NA	NA	NA	-7428	NM_146187	233079	Mm.97338	NM_146187	ENSMUSG00000051314	Ffar2	GPCR43|Gpr43	free fatty acid receptor 2	protein-coding	0.025000	0.567164	-32(TTCTATAAAAAC,-,0.00)
mm_86610.1	chr10	13964737	13964937	+	1	NA	NA	NA	-1542	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.110000	0.731343	
mm_45306.1	chr5	65422813	65423013	-	1	NA	NA	NA	12929	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.020000	0.497512	
mm_42775.1	chr5	121367109	121367309	+	1	NA	NA	NA	18406	NM_001163470	231712	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.015000	0.497512	
mm_57145.1	chr6	122654280	122654480	-	1	NA	NA	NA	27956	NM_139218	73708	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.020000	0.497512	
mm_139779.1	chr17	65782944	65783144	+	1	NA	NA	NA	-311	NM_001114131	70351	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0.195000	0.830846	
mm_93629.1	chr10	117280586	117280786	-	1	NA	NA	NA	1586	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.020000	0.447761	
mm_89086.1	chr10	83597248	83597448	+	1	NA	NA	NA	51316	NM_145220	216190	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.005000	0.328358	
mm_119551.1	chr14	48580523	48580723	+	1	NA	NA	NA	82249	NM_144841	18424	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	0.030000	0.482587	
mm_62706.1	chr7	110627558	110627758	+	1	NA	NA	NA	-11	NM_009627	11535	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.055000	0.577114	-33(GCGCTTATAAGA,-,0.00),-31(GCTTATAAGACG,+,0.00)
mm_48545.1	chr5	142905509	142905709	-	1	NA	NA	NA	1145	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.085000	0.592040	
mm_85132.1	chr9	95750214	95750414	-	1	NA	NA	NA	44	NM_001311123	22063	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0.115000	0.736318	
mm_17322.1	chr2	26476048	26476248	-	1	NA	NA	NA	-6029	NR_105962	102465602		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.015000	0.537313	
mm_93967.1	chr10	127288881	127289081	-	1	NA	NA	NA	37	NM_001347171	110962	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.145000	0.800995	
mm_94248.1	chr11	3330679	3330879	+	1	NA	NA	NA	48	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.015000	0.557214	
mm_154408.1	chrM	14573	14773	+	1	NA	NA	NA	NA	NA									0.035000	0.462687	
mm_80694.1	chr9	91404416	91404616	+	1	NA	NA	NA	35544	NM_009576	22774	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.015000	0.457711	
mm_54008.1	chr6	7982952	7983152	-	1	NA	NA	NA	137828	NM_052993	94192	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.045000	0.582090	
mm_31844.1	chr4	74251901	74252101	+	1	NA	NA	NA	122	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.095000	0.651741	
mm_59709.1	chr7	28734956	28735156	+	1	NA	NA	NA	6725	NM_011885	24030	Mm.358650	NM_011885	ENSMUSG00000045948	Mrps12	AI327385|Rpms12|rps12	mitochondrial ribosomal protein S12	protein-coding	0.045000	0.601990	
mm_138521.1	chr17	35238257	35238457	+	1	NA	NA	NA	1761	NM_023179	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.020000	0.467662	
mm_52788.1	chr6	121260876	121261076	+	1	NA	NA	NA	15070	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.025000	0.388060	
mm_34712.1	chr4	152116339	152116539	+	1	NA	NA	NA	96	NM_033042	85030	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0.010000	0.582090	
mm_9830.1	chr1	182517657	182517857	-	1	NA	NA	NA	-274	NM_009794	12334	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.065000	0.601990	
mm_79708.1	chr9	61225513	61225713	+	1	NA	NA	NA	68196	NR_045334	622037	Mm.126243	NR_045334	ENSMUSG00000111658	B930092H01Rik	-	RIKEN cDNA B930092H01 gene	ncRNA	0.005000	0.417910	-30(CTCCATTTAAGA,-,0.00)
mm_143710.1	chr17	80701914	80702114	-	1	NA	NA	NA	26011	NM_001290345	225028	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.005000	0.427861	
mm_59826.1	chr7	29289212	29289412	+	1	NA	NA	NA	-8	NM_026731	68458	Mm.2343	NM_026731	ENSMUSG00000037166	Ppp1r14a	1110001M11Rik|Cpi17	protein phosphatase 1, regulatory (inhibitor) subunit 14A	protein-coding	0.130000	0.771144	
mm_121813.1	chr14	20393423	20393623	-	1	NA	NA	NA	32	NM_025440	66242	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16	mitochondrial ribosomal protein S16	protein-coding	0.130000	0.756219	
mm_52120.1	chr6	97929743	97929943	+	1	NA	NA	NA	26	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.020000	0.492537	
mm_70531.1	chr8	13037198	13037398	+	1	NA	NA	NA	-10	NM_007972	14058	Mm.262589	NM_007972	ENSMUSG00000031444	F10	Cf10|fX	coagulation factor X	protein-coding	0.010000	0.502488	
mm_68455.1	chr7	110121486	110121686	-	1	NA	NA	NA	-473	NM_009516	22390	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.055000	0.611940	
mm_144725.1	chr18	35215003	35215203	+	1	NA	NA	NA	-79	NM_178005	107065	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0.030000	0.452736	-53(CTGTATATAGGC,-,0.00)
mm_8057.1	chr1	135375005	135375205	-	1	NA	NA	NA	-42	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.080000	0.741294	
mm_122748.1	chr14	54171253	54171453	-	1	NA	NA	NA	82576	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.030000	0.497512	
mm_75733.1	chr8	69453460	69453660	-	1	NA	NA	NA	-58016	NR_038043	378466	Mm.37846	NM_194351	ENSMUSG00000110444	Gm10033	9330175B10Rik|ENSMUSG00000057924|Gm10311	predicted gene 10033	ncRNA	0.015000	0.452736	
mm_91810.1	chr10	53993694	53993894	-	1	NA	NA	NA	82002	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.010000	0.442786	
mm_115923.1	chr13	23556019	23556219	-	1	NA	NA	NA	1087	NM_145713	14957	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	0.030000	0.467662	
mm_142008.1	chr17	35200223	35200423	-	1	NA	NA	NA	1684	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.025000	0.592040	
mm_163048.1	chr11	57829171	57829371	-	1	NA	NA	NA	2876	NM_008213	15110	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed transcript 1	protein-coding	0.060000	0.582090	
mm_26529.1	chr3	146117357	146117557	+	1	NA	NA	NA	-4334	NM_134160	171166	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	0.040000	0.636816	-41(CCCCATAAAGGG,-,0.00)
mm_27833.1	chr3	79129326	79129526	-	1	NA	NA	NA	15461	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.457711	
mm_25282.1	chr3	105558390	105558590	+	1	NA	NA	NA	99674	NM_019931	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	0.005000	0.442786	-63(GGTTATAAAAAG,-,0.00)
mm_35583.1	chr4	41741224	41741424	-	1	NA	NA	NA	35	NM_001286540	18391	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0.105000	0.661692	
mm_156861.1	chrX	164419703	164419903	+	1	NA	NA	NA	16	NM_011081	18700	Mm.3781	NM_011081	ENSMUSG00000031381	Piga	AI194334|Pig-a	phosphatidylinositol glycan anchor biosynthesis, class A	protein-coding	0.090000	0.606965	
mm_24071.1	chr3	87919472	87919672	+	1	NA	NA	NA	28	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.055000	0.502488	
mm_118948.1	chr14	27360631	27360831	+	1	NA	NA	NA	-658	NM_001289688	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.015000	0.512438	7(TGCTTTAAAAGC,-,0.00),8(GCTTTAAAAGCA,+,0.00)
mm_57947.1	chr6	134897784	134897984	-	1	NA	NA	NA	41	NR_072990	14760	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	0.100000	0.666667	
mm_5330.1	chr1	23891818	23892018	-	1	NA	NA	NA	17818	NR_110972	98366	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	0.005000	0.363184	
mm_38376.1	chr4	138459826	138460026	-	1	NA	NA	NA	4778	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.020000	0.537313	
mm_168267.1	chr10	93665775	93665975	-	1	NA	NA	NA	-21	NR_027478	667338	Mm.454582	NR_027478		Gm8580	EG667338	ribosomal protein L29 pseudogene	pseudo	0.030000	0.462687	
mm_45345.1	chr5	65858037	65858237	-	1	NA	NA	NA	-5432	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.035000	0.537313	
mm_61069.1	chr7	51510896	51511096	+	1	NA	NA	NA	-33	NR_073508	233246	Mm.254431	NM_177694	ENSMUSG00000055489	Ano5	9330162L24|Gdd1|Tmem16e	anoctamin 5	protein-coding	0.045000	0.611940	
mm_5122.1	chr1	9298750	9298950	-	1	NA	NA	NA	1027	NM_001290390	71096	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	0.070000	0.547264	
mm_113777.1	chr13	45389642	45389842	+	1	NA	NA	NA	0	NM_153789	218203	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.115000	0.726368	-37(GCCTCTATAAAA,-,0.00),-35(CTCTATAAAAGA,-,0.00)
mm_92246.1	chr10	70364603	70364803	-	1	NA	NA	NA	-75965	NM_001143777	71721	Mm.477813	NM_024244	ENSMUSG00000043259	Fam13c	1200015N20Rik|C030038O19Rik|mKIAA1796	family with sequence similarity 13, member C	protein-coding	0.015000	0.482587	
mm_20230.1	chr2	125831247	125831447	-	1	NA	NA	NA	27735	NM_009939	12848	Mm.3596	NM_009939	ENSMUSG00000027206	Cops2	AI315723|C85265|Csn2|Sgn2|TRIP-15|Trip15	COP9 signalosome subunit 2	protein-coding	0.010000	0.323383	-7(TTTTTTAAAGAC,+,0.00)
mm_30701.1	chr4	11758129	11758329	+	1	NA	NA	NA	72	NM_019753	12557	Mm.33402	NM_019753	ENSMUSG00000028217	Cdh17	HPT-1|HPT-1/LI	cadherin 17	protein-coding	0.010000	0.457711	
mm_29309.1	chr3	107943623	107943823	-	1	NA	NA	NA	26	NM_008184	14867	Mm.458154	NM_008184	ENSMUSG00000068762	Gstm6	-	glutathione S-transferase, mu 6	protein-coding	0.025000	0.517413	
mm_2078.1	chr1	87653237	87653437	+	1	NA	NA	NA	33025	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.005000	0.398010	
mm_160420.1	chr8	84176454	84176654	-	1	NA	NA	NA	-2	NM_194059	244551	Mm.216740	NM_194059	ENSMUSG00000056155	Nanos3	nos3	nanos homolog 3 (Drosophila)	protein-coding	0.000000	0.512438	
mm_69561.1	chr7	135700290	135700490	-	1	NA	NA	NA	15989	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.427861	
mm_30847.1	chr4	24898019	24898219	+	1	NA	NA	NA	36	NM_026742	68493	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	0.105000	0.636816	
mm_53861.1	chr6	149309703	149309903	+	1	NA	NA	NA	389	NM_001289662	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.065000	0.547264	
mm_87255.1	chr10	41519368	41519568	+	1	NA	NA	NA	-32	NM_016898	53599	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.135000	0.736318	
mm_144272.1	chr18	11633249	11633449	+	1	NA	NA	NA	73	NR_045527	225182	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8	protein-coding	0.025000	0.472637	
mm_91599.1	chr10	40985586	40985786	-	1	NA	NA	NA	85898	NM_199058	140741	Mm.290693	NM_199058	ENSMUSG00000046922	Gpr6	AI852874|Gm233	G protein-coupled receptor 6	protein-coding	0.015000	0.616915	
mm_20882.1	chr2	148771463	148771663	-	1	NA	NA	NA	-66	NM_030059	78240	Mm.99424	NM_030059	ENSMUSG00000036958	Cst11	9230101F08Rik|BB067629|CRES2|mCSTE1	cystatin 11	protein-coding	0.010000	0.522388	
mm_139527.1	chr17	56659596	56659796	+	1	NA	NA	NA	-13529	NM_001252466	71810	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	0.005000	0.497512	
mm_47075.1	chr5	116591721	116591921	-	1	NA	NA	NA	-4	NM_026886	68955	Mm.146779	NM_026886	ENSMUSG00000063919	Srrm4	1500001A10Rik|B230202K19Rik|bv|mKIAA1853|nSR100	serine/arginine repetitive matrix 4	protein-coding	0.110000	0.641791	
mm_116039.1	chr13	26787703	26787903	-	1	NA	NA	NA	-17638	NM_008232	15192	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	hepatoma derived growth factor-like 1	protein-coding	0.025000	0.497512	
mm_63927.1	chr7	139403656	139403856	+	1	NA	NA	NA	14647	NM_001127363	212111	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.000000	0.328358	
mm_26889.1	chr3	18243172	18243372	-	1	NA	NA	NA	66	NM_007825	13123	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	0.045000	0.636816	
mm_113535.1	chr13	37846245	37846445	+	1	NA	NA	NA	18952	NM_001039188	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.030000	0.348259	
mm_62410.1	chr7	101219200	101219400	+	1	NA	NA	NA	82788	NM_001111111	73683	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.000000	0.368159	
mm_17313.1	chr2	26409125	26409325	-	1	NA	NA	NA	-6	NR_110957	64436	Mm.330070	NM_033134	ENSMUSG00000026925	Inpp5e	1200002L24Rik|72kDa|mKIAA0123	inositol polyphosphate-5-phosphatase E	protein-coding	0.095000	0.716418	
mm_59035.1	chr7	19318934	19319134	+	1	NA	NA	NA	-8989	NM_001347586	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.000000	0.502488	
mm_107482.1	chr12	38036677	38036877	+	1	NA	NA	NA	156072	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	0.000000	0.303483	
mm_103063.1	chr11	69837650	69837850	-	1	NA	NA	NA	-775	NM_026982	69186	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	0.125000	0.751244	
mm_158092.1	chrX	101419724	101419924	-	1	NA	NA	NA	90	NM_001177986	56364	Mm.23458	NM_019831	ENSMUSG00000031310	Zmym3	9030216B10Rik|AW122925|DXS6673El|Zfp261	zinc finger, MYM-type 3	protein-coding	0.085000	0.701493	9(CCATTTAAAGGG,+,0.00),9(CCATTTAAAGGG,-,0.00)
mm_81564.1	chr9	110415753	110415953	+	1	NA	NA	NA	-3955	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.015000	0.487562	
mm_170479.1	chr19	12272892	12273092	+	1	NA	NA	NA	4760	NM_146686	258681	Mm.271522	NM_146686	ENSMUSG00000060049	Olfr235	MOR214-3|Olfr232|Olfr232-ps1|Olfr235-ps1|Olfr245|Olfr245-ps1	olfactory receptor 235	protein-coding	0.030000	0.487562	
mm_6290.1	chr1	69759609	69759809	-	1	NA	NA	NA	-67261	NM_029160	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	0.035000	0.497512	
mm_168754.1	chr12	115964200	115964400	-	1	NA	NA	NA	-83424	NM_001004066	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0.005000	0.427861	
mm_80491.1	chr9	78427597	78427797	+	1	NA	NA	NA	15540	NR_125721	214763	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0.070000	0.661692	
mm_115870.1	chr13	21530966	21531166	-	1	NA	NA	NA	48	NM_139141	93681	Mm.290601	NM_139141	ENSMUSG00000063894	Zkscan8	2510038J07Rik|D430019P06Rik|LD5-1|Zfp192	zinc finger with KRAB and SCAN domains 8	protein-coding	0.095000	0.666667	
mm_121317.1	chr14	110239817	110240017	+	1	NA	NA	NA	515232	NM_175499	239250	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding	0.000000	0.298507	-66(GCATATATAGTA,+,0.00)
mm_31769.1	chr4	63545297	63545497	+	1	NA	NA	NA	632	NM_024173	66290	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0.040000	0.442786	
mm_16987.1	chr2	18050884	18051084	-	1	NA	NA	NA	-2535	NM_028317	72668	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113	SKI/DACH domain containing 1	protein-coding	0.010000	0.452736	-35(CACTATATAAGT,-,0.00)
mm_69134.1	chr7	127028025	127028225	-	1	NA	NA	NA	-1646	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.035000	0.592040	
mm_41020.1	chr5	81461145	81461345	+	1	NA	NA	NA	439652	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.015000	0.288557	
mm_163101.1	chr11	69735309	69735509	-	1	NA	NA	NA	23224	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.010000	0.577114	
mm_116501.1	chr13	44982753	44982953	-	1	NA	NA	NA	19243	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.035000	0.611940	
mm_58963.1	chr7	18958487	18958687	+	1	NA	NA	NA	-28937	NM_194064	378430	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos homolog 2 (Drosophila)	protein-coding	0.070000	0.676617	
mm_155754.1	chrX	96167338	96167538	+	1	NA	NA	NA	71393	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.000000	0.512438	
mm_6331.1	chr1	71625952	71626152	-	1	NA	NA	NA	27182	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.025000	0.582090	
mm_91054.1	chr10	18804968	18805168	-	1	NA	NA	NA	-18275	NM_177706	237300	Mm.444821	NM_177706	ENSMUSG00000044624	Gm4922	4933423E17|EG237300	predicted gene 4922	protein-coding	0.005000	0.298507	
mm_149904.1	chr19	25603093	25603293	+	1	NA	NA	NA	-7344	NM_177360	240590	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	0.030000	0.552239	
mm_90470.1	chr10	127849809	127850009	+	1	NA	NA	NA	-19	NM_147222	216453	Mm.222953	NM_147222	ENSMUSG00000054052	Rdh19	RDH-S|RDH-S2|Rdhs	retinol dehydrogenase 19	protein-coding	0.005000	0.462687	
mm_111873.1	chr12	108003487	108003687	-	1	NA	NA	NA	-173	NM_021399	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.030000	0.447761	
mm_23064.1	chr3	36000329	36000529	+	1	NA	NA	NA	249	NM_023644	72039	Mm.249016	NM_023644	ENSMUSG00000027709	Mccc1	1810045E08Rik|2310058B18Rik|MCCalpha|Mcca|R75106	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	protein-coding	0.065000	0.621891	-26(GCACTTAAAGGG,-,0.00)
mm_19015.1	chr2	76906218	76906418	-	1	NA	NA	NA	76229	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.025000	0.532338	
mm_33932.1	chr4	136889957	136890157	+	1	NA	NA	NA	2857	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.030000	0.587065	
mm_161478.1	chr15	82082321	82082521	+	1	NA	NA	NA	-55	NM_001310435	74369	Mm.289351	NM_028897	ENSMUSG00000068117	Mei1	4932408F18Rik|mei1	meiotic double-stranded break formation protein 1	protein-coding	0.025000	0.447761	
mm_33278.1	chr4	128727474	128727674	+	1	NA	NA	NA	3	NM_001195083	54383	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic-like 2 (Drosophila)	protein-coding	0.195000	0.830846	
mm_147392.1	chr18	44175121	44175321	-	1	NA	NA	NA	-148	NM_183123	77424	Mm.99224	NM_183123	ENSMUSG00000053729	Spinkl	9530002K18Rik	serine protease inhibitor, Kazal type-like	protein-coding	0.010000	0.378109	
mm_132277.1	chr16	32973801	32974001	+	1	NA	NA	NA	59801	NM_001310672	70144	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	0.010000	0.373134	
mm_78673.1	chr9	40780250	40780450	+	1	NA	NA	NA	-20923	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.005000	0.487562	
mm_82368.1	chr9	14614704	14614904	-	1	NA	NA	NA	196	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.090000	0.696517	
mm_171325.1	chr3	96460092	96460292	-	1	NA	NA	NA	-7886	NM_001256180	329716	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	0.075000	0.636816	
mm_13005.1	chr2	90904694	90904894	+	1	NA	NA	NA	8	NM_025991	67136	Mm.330394	NM_025991	ENSMUSG00000005505	Kbtbd4	2510026C23Rik	kelch repeat and BTB (POZ) domain containing 4	protein-coding	0.085000	0.611940	
mm_4785.1	chr1	184034363	184034563	+	1	NA	NA	NA	2	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.075000	0.582090	
mm_82334.1	chr9	9238974	9239174	-	1	NA	NA	NA	-61	NM_027823	71544	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0.115000	0.746269	
mm_114032.1	chr13	52648018	52648218	+	1	NA	NA	NA	51236	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.020000	0.562189	
mm_105152.1	chr11	101465106	101465306	-	1	NA	NA	NA	993	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.060000	0.651741	
mm_85286.1	chr9	99709977	99710177	-	1	NA	NA	NA	-14	NM_001194922	56492	Mm.386784	NM_019815	ENSMUSG00000032473	Cldn18	-	claudin 18	protein-coding	0.025000	0.542289	
mm_38170.1	chr4	135217158	135217358	-	1	NA	NA	NA	55502	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.015000	0.467662	
mm_35487.1	chr4	40931204	40931404	-	1	NA	NA	NA	11248	NM_011463	20731	Mm.25246	NM_011463	ENSMUSG00000028415	Spink4	MPGC60	serine peptidase inhibitor, Kazal type 4	protein-coding	0.000000	0.447761	
mm_63062.1	chr7	122078904	122079104	+	1	NA	NA	NA	11806	NM_138589	28018	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	0.000000	0.288557	
mm_46322.1	chr5	100719591	100719791	-	1	NA	NA	NA	25	NM_152803	15442	Mm.265786	NM_152803	ENSMUSG00000035273	Hpse	HSE1|Hpa|Hpr1	heparanase	protein-coding	0.070000	0.726368	
mm_57628.1	chr6	128300333	128300533	-	1	NA	NA	NA	380	NM_001080979	21679	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	0.125000	0.746269	
mm_103938.1	chr11	83737213	83737413	-	1	NA	NA	NA	-9627	NM_183249	66107	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.010000	0.422886	
mm_172719.1	chr8	70897282	70897482	-	1	NA	NA	NA	61	NM_029751	76808	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	0.095000	0.656716	
mm_66079.1	chr7	30956515	30956715	-	1	NA	NA	NA	188	NM_011680	22282	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0.145000	0.805970	
mm_68022.1	chr7	100964283	100964483	-	1	NA	NA	NA	-17	NM_183168	233571	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.010000	0.592040	
mm_163342.1	chr12	16532685	16532885	+	1	NA	NA	NA	56985	NM_015763	14245	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188	lipin 1	protein-coding	0.025000	0.592040	
mm_148074.1	chr18	72350889	72351089	-	1	NA	NA	NA	80	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.060000	0.577114	
mm_42332.1	chr5	114902705	114902905	+	1	NA	NA	NA	5871	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.000000	0.373134	
mm_46107.1	chr5	92348088	92348288	-	1	NA	NA	NA	701	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.040000	0.542289	
mm_109782.1	chr12	119946019	119946219	+	1	NA	NA	NA	157	NM_001160385	217951	Mm.387395	NM_001160385	ENSMUSG00000048004	Tmem196	Gm528	transmembrane protein 196	protein-coding	0.040000	0.577114	
mm_137915.1	chr17	32284373	32284573	+	1	NA	NA	NA	-340	NM_020508	57261	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0.145000	0.761194	
mm_133718.1	chr16	93682914	93683114	+	1	NA	NA	NA	-205	NM_173047	109857	Mm.4512	NM_173047	ENSMUSG00000022947	Cbr3	1110001J05Rik|C81353	carbonyl reductase 3	protein-coding	0.040000	0.502488	
mm_36516.1	chr4	84456091	84456291	-	1	NA	NA	NA	218895	NM_172870	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.015000	0.477612	
mm_47948.1	chr5	135460348	135460548	-	1	NA	NA	NA	-65902	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.025000	0.532338	-3(CCATTAATACGC,+,0.00)
mm_127557.1	chr15	102150988	102151188	+	1	NA	NA	NA	513	NM_146064	223920	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	0.030000	0.527363	
mm_73994.1	chr8	120697619	120697819	+	1	NA	NA	NA	29399	NM_001293559	12857	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit IV isoform 1	protein-coding	0.015000	0.437811	
mm_67801.1	chr7	98097581	98097781	-	1	NA	NA	NA	11567	NM_001256082	17921	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.025000	0.611940	
mm_113901.1	chr13	49215546	49215746	+	1	NA	NA	NA	380	NM_026738	68480	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.085000	0.651741	
mm_54424.1	chr6	33060112	33060312	-	1	NA	NA	NA	-60	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0.090000	0.636816	
mm_165803.1	chr3	144110697	144110897	-	1	NA	NA	NA	91535	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.005000	0.432836	
mm_51980.1	chr6	91938902	91939102	+	1	NA	NA	NA	34769	NM_198668	381798	Mm.444785	NM_198668	ENSMUSG00000034063	4930590J08Rik	Gm1071	RIKEN cDNA 4930590J08 gene	protein-coding	0.015000	0.338308	-86(TTTTTTAAGGTC,+,0.00)
mm_42524.1	chr5	115605547	115605747	+	1	NA	NA	NA	24698	NR_105996	102466790		NR_105996	ENSMUSG00000099047	Mir7029	Gm27293|mmu-mir-7029	microRNA 7029	ncRNA	0.010000	0.537313	
mm_39587.1	chr5	23485261	23485461	+	1	NA	NA	NA	50932	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.015000	0.378109	
mm_66053.1	chr7	30737755	30737955	-	1	NA	NA	NA	1552	NM_008085	14447	Mm.436562	NM_008085	ENSMUSG00000061099	Gapdhs	Gapd-s|Gapds	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein-coding	0.000000	0.631841	
mm_21418.1	chr2	158128579	158128779	-	1	NA	NA	NA	17713	NM_009373	21817	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.020000	0.582090	
mm_130188.1	chr15	93679856	93680056	-	1	NA	NA	NA	-84065	NM_001033217	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.030000	0.507463	
mm_1924.1	chr1	86052958	86053158	+	1	NA	NA	NA	7195	NM_001144992	72792	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	0.015000	0.572139	
mm_81652.1	chr9	110953736	110953936	+	1	NA	NA	NA	2291	NM_028838	74249	Mm.307615	NM_028838	ENSMUSG00000032495	Lrrc2	2400002D05Rik|4933431K03Rik	leucine rich repeat containing 2	protein-coding	0.075000	0.601990	
mm_120002.1	chr14	55618951	55619151	+	1	NA	NA	NA	885	NM_020002	56739	Mm.23149	NM_020002	ENSMUSG00000002324	Rec8	Rec8L1|mrec	REC8 meiotic recombination protein	protein-coding	0.020000	0.522388	
mm_39064.1	chr4	154025976	154026176	-	1	NA	NA	NA	-32	NM_001163721	68859	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	0.045000	0.671642	
mm_142860.1	chr17	51813474	51813674	-	1	NA	NA	NA	-1520	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.140000	0.766169	
mm_42346.1	chr5	114910951	114911151	+	1	NA	NA	NA	-12189	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.010000	0.527363	
mm_39755.1	chr5	29735744	29735944	+	1	NA	NA	NA	-54	NM_001037940	23950	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0.095000	0.616915	
mm_167570.1	chr9	42776890	42777090	-	1	NA	NA	NA	167381	NM_175481	110637	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0.015000	0.577114	
mm_135985.1	chr16	75092621	75092821	-	1	NA	NA	NA	493340	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.015000	0.407960	87(GCTCTTAAAGTG,+,0.00)
mm_23274.1	chr3	51660274	51660474	+	1	NA	NA	NA	-805	NM_174995	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.025000	0.557214	
mm_105691.1	chr11	107769937	107770137	-	1	NA	NA	NA	24427	NM_019431	54377	Mm.103724	NM_019431	ENSMUSG00000020723	Cacng4	AI413107|AW491861	calcium channel, voltage-dependent, gamma subunit 4	protein-coding	0.005000	0.462687	25(GCTCTTATAGAG,+,0.00),27(TCTTATAGAGAC,+,0.00)
mm_45596.1	chr5	74710992	74711192	-	1	NA	NA	NA	-8189	NM_001159577	16924	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.020000	0.512438	
mm_159118.1	chr2	65670408	65670608	+	1	NA	NA	NA	1822	NM_001346680	110876	Mm.220329	NM_001099298	ENSMUSG00000075318	Scn2a	6430408L10|A230052E19Rik|Nav1.2|Scn2a1	sodium channel, voltage-gated, type II, alpha	protein-coding	0.020000	0.457711	
mm_107901.1	chr12	70852835	70853035	+	1	NA	NA	NA	27421	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.000000	0.373134	
mm_116380.1	chr13	41035953	41036153	-	1	NA	NA	NA	19803	NM_025387	66154	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0.005000	0.358209	
mm_32717.1	chr4	116221527	116221727	+	1	NA	NA	NA	-287	NM_181585	18710	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55pik	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	protein-coding	0.060000	0.641791	
mm_129546.1	chr15	79403179	79403379	-	1	NA	NA	NA	-1	NM_001253819	223693	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	0.165000	0.786070	-93(GCCCCTTTAAGG,-,0.00),-92(CCCCTTTAAGGC,-,0.00),-91(CCCTTTAAGGCT,+,0.00),-90(CCTTTAAGGCTC,+,0.00)
mm_49523.1	chr6	29985202	29985402	+	1	NA	NA	NA	-27	NR_040264	76419	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	0.095000	0.616915	
mm_5485.1	chr1	36891525	36891725	-	1	NA	NA	NA	47902	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.015000	0.472637	
mm_17390.1	chr2	27072110	27072310	-	1	NA	NA	NA	-49	NM_025376	66139	Mm.330087	NM_025376	ENSMUSG00000009214	Tmem8c	1110002H13Rik|AI131587	transmembrane protein 8C	protein-coding	0.010000	0.527363	
mm_120899.1	chr14	75849463	75849663	+	1	NA	NA	NA	1640	NR_028481	100303751	Mm.484707	NR_028481	ENSMUSG00000065147	Snora31	MBI-161	small nucleolar RNA, H/ACA box 31	snoRNA	0.015000	0.437811	
mm_59226.1	chr7	24638680	24638880	+	1	NA	NA	NA	2210	NM_133743	72434	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	0.015000	0.527363	
mm_108667.1	chr12	86504664	86504864	+	1	NA	NA	NA	83120	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.000000	0.482587	
mm_146172.1	chr18	75367264	75367464	+	1	NA	NA	NA	-1	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.120000	0.761194	
mm_120687.1	chr14	70774263	70774463	+	1	NA	NA	NA	-18	NM_010071	13449	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip	docking protein 2	protein-coding	0.015000	0.527363	
mm_156562.1	chrX	151803314	151803514	+	1	NA	NA	NA	132	NM_021523	59026	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	0.095000	0.641791	
mm_28758.1	chr3	95871391	95871591	-	1	NA	NA	NA	-31	NR_040446	100042889	Mm.440109	NR_040446	ENSMUSG00000080727	C920021L13Rik	-	RIKEN cDNA C920021L13 gene	ncRNA	0.090000	0.656716	
mm_107277.1	chr12	29534780	29534980	+	1	NA	NA	NA	-25	NM_001093776	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.070000	0.681592	
mm_172916.1	chr9	65196587	65196787	-	1	NA	NA	NA	-18003	NM_177460	214424	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.025000	0.422886	
mm_172592.1	chr8	12873842	12874042	+	1	NA	NA	NA	-41951	NM_178076	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.075000	0.691542	
mm_13947.1	chr2	121298500	121298700	+	1	NA	NA	NA	3146	NM_001173506	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.010000	0.537313	
mm_101963.1	chr11	50301708	50301908	-	1	NA	NA	NA	-9472	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.015000	0.467662	
mm_5969.1	chr1	57098791	57098991	-	1	NA	NA	NA	116105	NR_037990	407809	Mm.134505	NR_037990	ENSMUSG00000101429	BC055402	-	cDNA sequence BC055402	ncRNA	0.020000	0.517413	
mm_81257.1	chr9	107995633	107995833	+	1	NA	NA	NA	-6915	NM_013785	27399	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0.070000	0.631841	
mm_82917.1	chr9	35055697	35055897	-	1	NA	NA	NA	-60931	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.005000	0.542289	
mm_60201.1	chr7	43427548	43427748	+	1	NA	NA	NA	-2453	NM_177693	233187	Mm.267027	NM_177693	ENSMUSG00000004613	Lim2	19kDa|4833403J20|MP19|To3	lens intrinsic membrane protein 2	protein-coding	0.030000	0.527363	
mm_51989.1	chr6	92091433	92091633	+	1	NA	NA	NA	115	NM_011630	22026	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.145000	0.736318	
mm_157872.1	chrX	75416477	75416677	-	1	NA	NA	NA	7	NM_010839	105886298	Mm.16366	NM_010839	ENSMUSG00000090110	Cmc4	Mtcp1nb|p8MTCP1	C-x(9)-C motif containing 4	protein-coding	0.075000	0.666667	
mm_151744.1	chr19	5001761	5001961	-	1	NA	NA	NA	-11890	NM_153553	225872	Mm.287867	NM_153553	ENSMUSG00000045903	Npas4	LE-PAS|Nxf	neuronal PAS domain protein 4	protein-coding	0.070000	0.626866	49(GCCTTTTTAAGG,-,0.00),51(CTTTTTAAGGCA,+,0.00)
mm_22436.1	chr2	181691686	181691886	-	1	NA	NA	NA	31	NM_001291205	56470	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0.015000	0.552239	
mm_169689.1	chr15	74529972	74530172	-	1	NA	NA	NA	13876	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0.035000	0.547264	
mm_88210.1	chr10	70204536	70204736	+	1	NA	NA	NA	-28	NM_001304739	69563	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Mln	myoregulin	protein-coding	0.015000	0.467662	
mm_63968.1	chr7	139944552	139944752	+	1	NA	NA	NA	796	NM_009482	22286	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	0.075000	0.616915	
mm_10784.1	chr2	24345167	24345367	+	1	NA	NA	NA	-24	NM_001159562	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.020000	0.462687	
mm_160426.1	chr8	86861911	86862111	-	1	NA	NA	NA	23247	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.030000	0.522388	
mm_87660.1	chr10	58485783	58485983	+	1	NA	NA	NA	-12054	NM_001162956	76138	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.005000	0.358209	28(CAATATATAAGG,-,0.00)
mm_2813.1	chr1	130875895	130876095	+	1	NA	NA	NA	10218	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.015000	0.537313	
mm_124095.1	chr14	79199114	79199314	-	1	NA	NA	NA	48153	NM_001033215	105590	Mm.486536	NM_001033215	ENSMUSG00000071262	Zfp957	AU017455	zinc finger protein 957	protein-coding	0.010000	0.567164	
mm_85398.1	chr9	103358522	103358722	-	1	NA	NA	NA	6357	NM_001134427	321022	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.000000	0.402985	
mm_73058.1	chr8	94377825	94378025	+	1	NA	NA	NA	-8575	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.015000	0.572139	
mm_138262.1	chr17	34593303	34593503	+	1	NA	NA	NA	932	NM_017463	18515	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	0.030000	0.552239	
mm_72848.1	chr8	88309641	88309841	+	1	NA	NA	NA	15537	NM_001037724	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.025000	0.562189	
mm_170595.1	chr19	5802113	5802313	-	1	NA	NA	NA	459	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.030000	0.373134	
mm_128404.1	chr15	44619811	44620011	-	1	NA	NA	NA	270	NM_019480	55960	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0.050000	0.452736	
mm_84121.1	chr9	58555133	58555333	-	1	NA	NA	NA	-14293	NM_133983	102657	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.075000	0.721393	
mm_36454.1	chr4	82505126	82505326	-	1	NA	NA	NA	553	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.075000	0.597015	
mm_89434.1	chr10	91116698	91116898	+	1	NA	NA	NA	7165	NM_133668	18674	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.000000	0.288557	
mm_116739.1	chr13	51756577	51756777	-	1	NA	NA	NA	37070	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.010000	0.572139	
mm_39839.1	chr5	30887425	30887625	+	1	NA	NA	NA	-1327	NM_174849	231093	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0.030000	0.547264	52(GACCATAAAAGC,-,0.00)
mm_33916.1	chr4	136469685	136469885	+	1	NA	NA	NA	24	NM_024452	269593	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	0.130000	0.766169	
mm_148387.1	chr19	3377501	3377701	+	1	NA	NA	NA	-11256	NM_001039658	17771	Mm.209941	NM_010841	ENSMUSG00000024905	Mtl5	tesmin	metallothionein-like 5, testis-specific (tesmin)	protein-coding	0.015000	0.567164	
mm_73868.1	chr8	118733286	118733486	+	1	NA	NA	NA	449775	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.015000	0.368159	
mm_91767.1	chr10	51522345	51522545	-	1	NA	NA	NA	31547	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.482587	
mm_67546.1	chr7	81493633	81493833	-	1	NA	NA	NA	192	NM_021492	11775	Mm.322894	NM_021492	ENSMUSG00000062444	Ap3b2	AI549966|AU042881|Naptb|[b]-NAP|beta-NAP|beta3B	adaptor-related protein complex 3, beta 2 subunit	protein-coding	0.080000	0.656716	-34(CCTTTAAGAACC,+,0.00)
mm_20906.1	chr2	150306707	150306907	-	1	NA	NA	NA	49290	NM_001142410	100216455	Mm.484816	NM_001142410	ENSMUSG00000079008	Gm14124	EG640962|ENSMUSG00000074735|Gm10749|OTTMUSG00000015734	predicted gene 14124	protein-coding	0.005000	0.472637	
mm_1337.1	chr1	66062731	66062931	+	1	NA	NA	NA	-112498	NM_008632	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.010000	0.577114	
mm_108814.1	chr12	95692219	95692419	+	1	NA	NA	NA	93	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.030000	0.512438	
mm_106635.1	chr11	120938040	120938240	-	1	NA	NA	NA	-5268	NM_027745	71276	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.000000	0.547264	
mm_162502.1	chr1	143093557	143093757	+	1	NA	NA	NA	-547040	NM_020025	26878	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.035000	0.467662	
mm_9771.1	chr1	181001808	181002008	-	1	NA	NA	NA	15661	NM_010145	13849	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.010000	0.542289	
mm_70299.1	chr8	4087350	4087550	+	1	NA	NA	NA	18314	NM_026956	69142	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	0.070000	0.656716	
mm_144506.1	chr18	24653737	24653937	+	1	NA	NA	NA	146	NM_026779	68591	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	0.095000	0.691542	
mm_113090.1	chr13	23967184	23967384	+	1	NA	NA	NA	23930	NM_145399	214189	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.005000	0.432836	
mm_110520.1	chr12	54862752	54862952	-	1	NA	NA	NA	25	NM_007688	12632	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	0.140000	0.805970	
mm_75015.1	chr8	29219500	29219700	-	1	NA	NA	NA	36	NM_001347499	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 netrin receptor D	protein-coding	0.140000	0.761194	
mm_132189.1	chr16	32430949	32431149	+	1	NA	NA	NA	29	NM_001163159	13026	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	0.070000	0.631841	
mm_54056.1	chr6	13839427	13839627	-	1	NA	NA	NA	415	NM_001330666	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.015000	0.407960	
mm_35165.1	chr4	14621678	14621878	-	1	NA	NA	NA	0	NM_145947	208890	Mm.483839	NM_145947	ENSMUSG00000040569	Slc26a7	-	solute carrier family 26, member 7	protein-coding	0.015000	0.388060	-33(GAATATAAAGGG,-,0.00)
mm_120555.1	chr14	68086546	68086746	+	1	NA	NA	NA	2762	NM_010910	18039	Mm.1956	NM_010910	ENSMUSG00000022055	Nefl	AI847934|CMT2E|NF-L|NF68|Nfl	neurofilament, light polypeptide	protein-coding	0.040000	0.577114	
mm_144460.1	chr18	23415476	23415676	+	1	NA	NA	NA	167	NM_001285811	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.005000	0.432836	
mm_134342.1	chr16	16560072	16560272	-	1	NA	NA	NA	47	NM_139232	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.015000	0.507463	
mm_113540.1	chr13	37857877	37858077	+	1	NA	NA	NA	-30457	NR_033218	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.060000	0.621891	27(GGCTTTAAGTGG,-,0.00)
mm_141146.1	chr17	26505892	26506092	-	1	NA	NA	NA	2480	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.030000	0.432836	
mm_69143.1	chr7	127051868	127052068	-	1	NA	NA	NA	9	NM_026918	69036	Mm.21835	NM_026918	ENSMUSG00000049350	Zg16	1810010M01Rik|AI593689|ZG16p	zymogen granule protein 16	protein-coding	0.040000	0.512438	
mm_171586.1	chr4	147641704	147641904	-	1	NA	NA	NA	704	NM_145078	112422	Mm.327194	NM_145078	ENSMUSG00000066000	Zfp979	2610305D13Rik|Ssm1b	zinc finger protein 979	protein-coding	0.005000	0.442786	-100(CATTTTATAGGC,+,0.00)
mm_120607.1	chr14	70159218	70159418	+	1	NA	NA	NA	184	NM_001112735	268759	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	0.115000	0.671642	
mm_24198.1	chr3	88615319	88615519	+	1	NA	NA	NA	-788	NM_001198911	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.015000	0.572139	
mm_89334.1	chr10	87933284	87933484	+	1	NA	NA	NA	-33287	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.000000	0.373134	
mm_158124.1	chrX	102505303	102505503	-	1	NA	NA	NA	-245	NM_027382	70315	Mm.328128	NM_027382	ENSMUSG00000067567	Hdac8	2610007D20Rik	histone deacetylase 8	protein-coding	0.015000	0.402985	-50(CTCCTTTAAAAC,-,0.00),-48(CCTTTAAAACTA,+,0.00)
mm_22012.1	chr2	167777176	167777376	-	1	NA	NA	NA	86099	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.000000	0.492537	
mm_141546.1	chr17	32034408	32034608	-	1	NA	NA	NA	0	NM_028902	74377	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	0.090000	0.601990	
mm_147330.1	chr18	42862537	42862737	-	1	NA	NA	NA	36869	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.015000	0.417910	
mm_84259.1	chr9	62536849	62537049	-	1	NA	NA	NA	95	NM_175484	235431	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.125000	0.766169	
mm_41619.1	chr5	96831382	96831582	+	1	NA	NA	NA	38097	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.005000	0.422886	
mm_61939.1	chr7	90182276	90182476	+	1	NA	NA	NA	52144	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.378109	
mm_41975.1	chr5	107431468	107431668	+	1	NA	NA	NA	19	NM_027599	70902	Mm.55870	NM_027599	ENSMUSG00000033794	Lpcat2b	4921521K07Rik|Aytl1b	lysophosphatidylcholine acyltransferase 2B	protein-coding	0.010000	0.388060	
mm_153455.1	chr19	41077012	41077212	-	1	NA	NA	NA	1	NM_153520	226115	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	0.005000	0.557214	
mm_121423.1	chr14	120275664	120275864	+	1	NA	NA	NA	95	NM_175341	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding	0.040000	0.542289	
mm_11486.1	chr2	32396167	32396367	+	1	NA	NA	NA	377	NM_133783	96979	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	0.095000	0.666667	-73(GTCCCTTTAAGG,-,0.00),-71(CCCTTTAAGGAA,+,0.00)
mm_161070.1	chr12	76385849	76386049	+	1	NA	NA	NA	15683	NM_178744	268564	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.035000	0.427861	
mm_148261.1	chr18	80901307	80901507	-	1	NA	NA	NA	32651	NM_001201569	50771	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	0.000000	0.313433	
mm_33310.1	chr4	129058230	129058430	+	1	NA	NA	NA	59	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.145000	0.776119	
mm_169128.1	chr13	58063945	58064145	-	1	NA	NA	NA	38383	NM_001195075	100503085	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0.010000	0.542289	
mm_143350.1	chr17	67095291	67095491	-	1	NA	NA	NA	-69156	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.015000	0.398010	
mm_87183.1	chr10	39198338	39198538	+	1	NA	NA	NA	-34644	NM_001127376	327743	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|ENSMUSG00000062074|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0.040000	0.517413	
mm_168414.1	chr11	3202224	3202424	-	1	NA	NA	NA	-29	NM_001166548	74203	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0.125000	0.731343	
mm_129675.1	chr15	81392214	81392414	-	1	NA	NA	NA	7380	NM_133726	70356	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	0.000000	0.333333	
mm_3594.1	chr1	151454099	151454299	+	1	NA	NA	NA	11806	NR_106150	102466847		NR_106150	ENSMUSG00000106406	Mir7682	mmu-mir-7682	microRNA 7682	ncRNA	0.005000	0.383085	11(CCACATATAGGC,+,0.00)
mm_82039.1	chr9	122128842	122129042	+	1	NA	NA	NA	11676	NM_133741	20623	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0.015000	0.462687	
mm_165351.1	chr2	120480200	120480400	+	1	NA	NA	NA	3391	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.010000	0.507463	
mm_65355.1	chr7	24998916	24999116	-	1	NA	NA	NA	6921	NM_001290469	232975	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.045000	0.587065	
mm_151585.1	chr19	61224634	61224834	+	1	NA	NA	NA	3684	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.030000	0.542289	
mm_95074.1	chr11	32636350	32636550	+	1	NA	NA	NA	-6105	NM_001271348	103583	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.010000	0.393035	
mm_168441.1	chr1	138110443	138110643	-	1	NA	NA	NA	64583	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.298507	
mm_128540.1	chr15	54952516	54952716	-	1	NA	NA	NA	-32470	NM_001285994	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.095000	0.676617	
mm_132464.1	chr16	36277064	36277264	+	1	NA	NA	NA	16	NM_001082543	20861	Mm.327618	NM_001082543	ENSMUSG00000071562	Stfa1	Stefin-3|Stf-3|Stf1|Stf3|Stfa3	stefin A1	protein-coding	0.015000	0.467662	-48(CCTTTAAAACCC,+,0.00)
mm_158688.1	chrX	160751193	160751393	-	1	NA	NA	NA	-16720	NM_011302	20147	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	0.005000	0.432836	
mm_34768.1	chr4	153694152	153694352	+	1	NA	NA	NA	-211422	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	0.035000	0.522388	
mm_74107.1	chr8	122870514	122870714	+	1	NA	NA	NA	22240	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.060000	0.701493	
mm_115190.1	chr13	108670479	108670679	+	1	NA	NA	NA	16402	NM_011056	238871	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	0.035000	0.442786	
mm_36087.1	chr4	58436758	58436958	-	1	NA	NA	NA	4240	NR_037278	100526502		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0.005000	0.288557	
mm_146328.1	chr18	80714981	80715181	+	1	NA	NA	NA	-2010	NM_001164109	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.070000	0.646766	
mm_28999.1	chr3	101581990	101582190	-	1	NA	NA	NA	22617	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.015000	0.532338	
mm_80834.1	chr9	97103849	97104049	+	1	NA	NA	NA	7092	NM_138756	192287	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.005000	0.487562	
mm_67280.1	chr7	78578044	78578244	-	1	NA	NA	NA	-306	NM_182809	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	0.060000	0.507463	
mm_20640.1	chr2	132021099	132021299	-	1	NA	NA	NA	8789	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.010000	0.572139	
mm_101673.1	chr11	37236172	37236372	-	1	NA	NA	NA	-292031	NM_011856	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.115000	0.626866	
mm_22372.1	chr2	181155271	181155471	-	1	NA	NA	NA	1644	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.025000	0.567164	
mm_16476.1	chr2	180732194	180732394	+	1	NA	NA	NA	6955	NM_183161	228993	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	0.010000	0.542289	
mm_141418.1	chr17	29434585	29434785	-	1	NA	NA	NA	-56360	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.035000	0.547264	
mm_70415.1	chr8	11448940	11449140	+	1	NA	NA	NA	-28889	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.010000	0.517413	3(GCCTTTTTAAGA,-,0.00),5(CTTTTTAAGACC,+,0.00)
mm_120921.1	chr14	76433080	76433280	+	1	NA	NA	NA	17359	NM_207652	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.005000	0.353234	34(ACTTATATAGCT,+,0.00)
mm_62664.1	chr7	108937950	108938150	+	1	NA	NA	NA	3635	NM_025344	66085	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0.010000	0.467662	
mm_49146.1	chr6	11925805	11926005	+	1	NA	NA	NA	24	NM_001168382	75725	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	0.080000	0.582090	
mm_67871.1	chr7	99169943	99170143	-	1	NA	NA	NA	12670	NM_026384	67800	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	0.015000	0.447761	-35(TCCTATATATGG,-,0.00),-33(CTATATATGGCC,+,0.00)
mm_32814.1	chr4	117210729	117210929	+	1	NA	NA	NA	-28205	NM_134471	73804	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.025000	0.398010	
mm_81863.1	chr9	118926433	118926633	+	1	NA	NA	NA	-3	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.140000	0.781095	
mm_162292.1	chr1	31019957	31020157	+	1	NA	NA	NA	-70302	NM_011200	19243	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	0.005000	0.492537	
mm_128677.1	chr15	60819618	60819818	-	1	NA	NA	NA	-3247	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0.005000	0.263682	
mm_42656.1	chr5	119625853	119626053	+	1	NA	NA	NA	11	NR_046178	330183	Mm.413133	NR_046178	ENSMUSG00000085708	Gm16063	G630008E18|OTTMUSG00000029664	predicted gene 16063	ncRNA	0.035000	0.497512	
mm_34340.1	chr4	143412908	143413108	+	1	NA	NA	NA	582	NM_172877	242736	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding	0.040000	0.527363	-33(GGCTATAAAAGC,-,0.00)
mm_33111.1	chr4	124737600	124737800	+	1	NA	NA	NA	-4150	NM_008385	16330	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	0.005000	0.537313	
mm_77531.1	chr8	123013366	123013566	-	1	NA	NA	NA	28818	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.010000	0.412935	37(GAGTTTAAGAGG,-,0.00)
mm_102075.1	chr11	52264895	52265095	-	1	NA	NA	NA	17600	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.025000	0.611940	
mm_100923.1	chr11	6444312	6444512	-	1	NA	NA	NA	31	NM_029938	77605	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av	H2A histone family, member V	protein-coding	0.165000	0.731343	
mm_149131.1	chr19	9002311	9002511	+	1	NA	NA	NA	13127	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.000000	0.547264	
mm_47620.1	chr5	125245711	125245911	-	1	NA	NA	NA	-66597	NM_001253904	20602	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.050000	0.597015	
mm_49474.1	chr6	29526585	29526785	+	1	NA	NA	NA	60	NM_012057	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.145000	0.815920	
mm_94437.1	chr11	6292558	6292758	+	1	NA	NA	NA	100	NM_001252288	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.035000	0.467662	
mm_158657.1	chrX	156295848	156296048	-	1	NA	NA	NA	-243535	NR_033598	74941	Mm.484588	NR_033598		4930503H13Rik	-	gem (nuclear organelle) associated protein 8 pseudogene	pseudo	0.000000	0.338308	
mm_107414.1	chr12	34653701	34653901	+	1	NA	NA	NA	-124912	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.010000	0.492537	
mm_82091.1	chr9	123051237	123051437	+	1	NA	NA	NA	16596	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.025000	0.542289	
mm_71381.1	chr8	45934536	45934736	+	1	NA	NA	NA	-13	NM_001033246	212392	Mm.296649	NM_001033246	ENSMUSG00000071104	Ccdc110	Gm172	coiled-coil domain containing 110	protein-coding	0.055000	0.592040	
mm_92822.1	chr10	81461535	81461735	-	1	NA	NA	NA	11496	NM_001311127	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.015000	0.502488	
mm_143082.1	chr17	57061892	57062092	-	1	NA	NA	NA	-239	NM_001347408	224912	Mm.284447	NM_177638	ENSMUSG00000044279	Crb3	5730439B18|AU015179|AU041752	crumbs family member 3	protein-coding	0.030000	0.547264	
mm_9855.1	chr1	184792726	184792926	-	1	NA	NA	NA	18474	NM_001290273	66112	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	0.005000	0.373134	
mm_22764.1	chr3	20057782	20057982	+	1	NA	NA	NA	71	NM_009210	20585	Mm.209650	NM_009210	ENSMUSG00000002428	Hltf	AF010600|BC057116|P113|Smarca3|Snf2l3	helicase-like transcription factor	protein-coding	0.085000	0.646766	
mm_42645.1	chr5	118628847	118629047	+	1	NA	NA	NA	68228	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.015000	0.472637	
mm_120961.1	chr14	77520125	77520325	+	1	NA	NA	NA	-13357	NR_033141	629678	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	0.010000	0.462687	
mm_27975.1	chr3	80802605	80802805	-	1	NA	NA	NA	86	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.040000	0.557214	
mm_155130.1	chrX	49470467	49470667	+	1	NA	NA	NA	117	NM_001081123	75404	Mm.44305	NM_001081123	ENSMUSG00000036198	Arhgap36	1100001E04Rik|rho-gap	Rho GTPase activating protein 36	protein-coding	0.075000	0.661692	
mm_132895.1	chr16	48844077	48844277	+	1	NA	NA	NA	1625	NM_020509	57262	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0.010000	0.487562	
mm_8370.1	chr1	150797121	150797321	-	1	NA	NA	NA	196214	NM_001024720	545370	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.000000	0.407960	
mm_97167.1	chr11	75509991	75510191	+	1	NA	NA	NA	-3	NM_001029938	280408	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	0.020000	0.562189	-39(CCCCTTATGGCC,+,0.00)
mm_165275.1	chr2	76807246	76807446	-	1	NA	NA	NA	132031	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.020000	0.462687	
mm_155823.1	chrX	100706742	100706942	+	1	NA	NA	NA	-23005	NM_023608	71584	Mm.283495	NM_023608	ENSMUSG00000019359	Gdpd2	9130017L10Rik|Gde3|Obdpf	glycerophosphodiester phosphodiesterase domain containing 2	protein-coding	0.000000	0.447761	
mm_54760.1	chr6	41163465	41163665	-	1	NA	NA	NA	-128056	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.462687	
mm_150678.1	chr19	42052727	42052927	+	1	NA	NA	NA	599	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	0.035000	0.572139	
mm_72489.1	chr8	83701999	83702199	+	1	NA	NA	NA	-2920	NM_177262	320795	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	0.010000	0.552239	
mm_101258.1	chr11	20881398	20881598	-	1	NA	NA	NA	-50390	NM_173752	216551	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.000000	0.462687	-42(TTCCATAAGAGG,-,0.00)
mm_156099.1	chrX	112558029	112558229	+	1	NA	NA	NA	-42397	NM_177747	245595	Mm.259846	NM_177747	ENSMUSG00000025529	Zfp711	2810409C01Rik|A230078I01Rik|Znf711	zinc finger protein 711	protein-coding	0.000000	0.303483	
mm_163994.1	chr14	64176338	64176538	+	1	NA	NA	NA	72115	NM_028525	73382	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	0.005000	0.407960	
mm_111179.1	chr12	83921754	83921954	-	1	NA	NA	NA	80	NR_073563	18222	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	numb homolog (Drosophila)	protein-coding	0.075000	0.671642	
mm_43238.1	chr5	130029262	130029462	+	1	NA	NA	NA	56	NM_007761	12909	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	0.115000	0.676617	
mm_146849.1	chr18	24020236	24020436	-	1	NA	NA	NA	435	NM_021559	59057	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf191|Znf24|Znp191	zinc finger protein 24	protein-coding	0.075000	0.666667	
mm_6335.1	chr1	71628016	71628216	-	1	NA	NA	NA	25118	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.025000	0.467662	
mm_57934.1	chr6	134632296	134632496	-	1	NA	NA	NA	92	NM_026345	67729	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	0.090000	0.666667	
mm_70951.1	chr8	26977017	26977217	+	1	NA	NA	NA	-219	NM_001101502	353310	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.155000	0.736318	
mm_62071.1	chr7	92705155	92705355	+	1	NA	NA	NA	-35343	NM_029078	74737	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	0.010000	0.477612	88(GCTTTTAAATCC,+,0.00)
mm_111627.1	chr12	102437084	102437284	-	1	NA	NA	NA	2629	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.035000	0.447761	85(TTTTTTAAACCG,+,0.00)
mm_128646.1	chr15	59525482	59525682	-	1	NA	NA	NA	-123072	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.020000	0.507463	
mm_131804.1	chr16	22899294	22899494	+	1	NA	NA	NA	-5008	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.010000	0.457711	
mm_69701.1	chr7	140050798	140050998	-	1	NA	NA	NA	-1810	NM_001347609	17703	Mm.4816	NM_010836	ENSMUSG00000025469	Msx3	AI323377	msh homeobox 3	protein-coding	0.000000	0.542289	
mm_17205.1	chr2	25469963	25470163	-	1	NA	NA	NA	-314	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.015000	0.572139	
mm_75941.1	chr8	71566530	71566730	-	1	NA	NA	NA	19	NM_145598	234404	Mm.213208	NM_145598	ENSMUSG00000034829	Nxnl1	A930031O08Rik|RdCVF|Txnl6	nucleoredoxin-like 1	protein-coding	0.015000	0.542289	
mm_28023.1	chr3	83046071	83046271	-	1	NA	NA	NA	3692	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.020000	0.398010	
mm_107535.1	chr12	40560150	40560350	+	1	NA	NA	NA	114197	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.020000	0.402985	
mm_61450.1	chr7	75586130	75586330	+	1	NA	NA	NA	130696	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.045000	0.582090	
mm_143353.1	chr17	67143348	67143548	-	1	NA	NA	NA	-117213	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.010000	0.432836	
mm_150409.1	chr19	36916971	36917171	+	1	NA	NA	NA	2528	NM_028263	72514	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0.005000	0.492537	
mm_112819.1	chr13	20798998	20799198	+	1	NA	NA	NA	4985	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.502488	
mm_53412.1	chr6	132595811	132596011	+	1	NA	NA	NA	-35	NM_031499	83380	Mm.333439	NM_031499	ENSMUSG00000058295	Prp2	MP14	proline rich protein 2	protein-coding	0.010000	0.512438	-34(CTCCTTATAAAG,-,0.00),-32(CCTTATAAAGGC,+,0.00),-32(CCTTATAAAGGC,-,0.00)
mm_21708.1	chr2	164593420	164593620	-	1	NA	NA	NA	51	NM_029325	75526	Mm.159533	NM_029325	ENSMUSG00000017733	Eppin	1700024E17Rik|Spinlw1	epididymal peptidase inhibitor	protein-coding	0.015000	0.512438	
mm_59015.1	chr7	19256025	19256225	+	1	NA	NA	NA	15729	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.005000	0.542289	62(CACTTTTTAGGG,-,0.00),64(CTTTTTAGGGAA,+,0.00)
mm_128056.1	chr15	26062425	26062625	-	1	NA	NA	NA	78159	NM_144523	52521	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.015000	0.442786	
mm_54631.1	chr6	38693405	38693605	-	1	NA	NA	NA	30436	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.010000	0.547264	
mm_18910.1	chr2	76734707	76734907	-	1	NA	NA	NA	59492	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.015000	0.482587	
mm_62720.1	chr7	110772749	110772949	+	1	NA	NA	NA	245	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.010000	0.537313	
mm_121839.1	chr14	20546450	20546650	-	1	NA	NA	NA	23	NM_001310426	19056	Mm.274432	NM_008914	ENSMUSG00000021816	Ppp3cb	1110063J16Rik|Calnb|CnAbeta|Cnab	protein phosphatase 3, catalytic subunit, beta isoform	protein-coding	0.100000	0.691542	
mm_48391.1	chr5	139814114	139814314	-	1	NA	NA	NA	69	NM_001161548	231832	Mm.482655	NM_144914	ENSMUSG00000036687	Tmem184a	Sdmg1	transmembrane protein 184a	protein-coding	0.030000	0.666667	
mm_51349.1	chr6	72555722	72555922	+	1	NA	NA	NA	6175	NM_001271395	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.040000	0.621891	
mm_30542.1	chr4	3678021	3678221	+	1	NA	NA	NA	0	NM_001111096	17096	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.065000	0.641791	
mm_16480.1	chr2	180890581	180890781	+	1	NA	NA	NA	-3359	NR_029538	723951		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA	0.045000	0.582090	
mm_51734.1	chr6	87072980	87073180	+	1	NA	NA	NA	30234	NM_013528	14583	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	0.015000	0.452736	
mm_99362.1	chr11	101665463	101665663	+	1	NA	NA	NA	22	NM_025404	80981	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0.100000	0.641791	
mm_3182.1	chr1	135766122	135766322	+	1	NA	NA	NA	137	NM_013750	27280	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	0.135000	0.736318	
mm_24904.1	chr3	96195332	96195532	+	1	NA	NA	NA	2154	NM_026975	69168	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	0.020000	0.462687	75(CCCTTAAAACCC,+,0.00)
mm_118048.1	chr13	101702024	101702224	-	1	NA	NA	NA	-9494	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.000000	0.378109	
mm_42649.1	chr5	118707308	118707508	+	1	NA	NA	NA	146689	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.010000	0.422886	
mm_133589.1	chr16	91424965	91425165	+	1	NA	NA	NA	18830	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.030000	0.547264	
mm_5809.1	chr1	52472835	52473035	-	1	NA	NA	NA	27513	NM_008667	17936	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	0.015000	0.422886	29(TGGTAGAAAAGG,-,0.00)
mm_110119.1	chr12	26443876	26444076	-	1	NA	NA	NA	12476	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.363184	
mm_136256.1	chr16	90988661	90988861	-	1	NA	NA	NA	22334	NM_001045515	104015	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.005000	0.328358	66(CCTTATATATAA,+,0.00),82(CCTTATATATCT,+,0.00)
mm_172699.1	chr8	63933193	63933393	-	1	NA	NA	NA	18877	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding	0.030000	0.601990	
mm_134631.1	chr16	21650941	21651141	-	1	NA	NA	NA	43624	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.005000	0.407960	
mm_92214.1	chr10	68239500	68239700	-	1	NA	NA	NA	39126	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.010000	0.457711	
mm_41970.1	chr5	107359512	107359712	+	1	NA	NA	NA	28418	NM_054054	114642	Mm.182836	NM_054054	ENSMUSG00000029279	Brdt	7420412D09Rik|Brd6|Fsrg3	bromodomain, testis-specific	protein-coding	0.040000	0.552239	
mm_28654.1	chr3	95230307	95230507	-	1	NA	NA	NA	1464	NM_001038708	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.000000	0.512438	
mm_169464.1	chr14	65790623	65790823	-	1	NA	NA	NA	-15188	NM_023209	52033	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	0.035000	0.557214	
mm_98445.1	chr11	94943497	94943697	+	1	NA	NA	NA	7373	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.015000	0.616915	
mm_95578.1	chr11	52569119	52569319	+	1	NA	NA	NA	172791	NM_153117	213673	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.010000	0.522388	
mm_81319.1	chr9	108479783	108479983	+	1	NA	NA	NA	21	NM_008483	16779	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	0.025000	0.527363	
mm_156885.1	chrX	166346511	166346711	+	1	NA	NA	NA	2058	NM_001177960	14758	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	0.005000	0.348259	
mm_86875.1	chr10	21996920	21997120	+	1	NA	NA	NA	2354	NM_011361	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.020000	0.472637	
mm_122822.1	chr14	54653638	54653838	-	1	NA	NA	NA	-37	NM_001085472	56215	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	0.025000	0.611940	
mm_63631.1	chr7	128461856	128462056	+	1	NA	NA	NA	-283	NM_001347640	21843	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.075000	0.626866	
mm_67362.1	chr7	79838641	79838841	-	1	NA	NA	NA	3611	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.015000	0.542289	
mm_20722.1	chr2	136387669	136387869	-	1	NA	NA	NA	198	NM_172858	241656	Mm.131572	NM_172858	ENSMUSG00000039913	Pak7	2900083L08Rik|6430627N20|Pak5	p21 protein (Cdc42/Rac)-activated kinase 7	protein-coding	0.050000	0.606965	
mm_150843.1	chr19	44957297	44957497	+	1	NA	NA	NA	26278	NM_001081225	226151	Mm.212609	NM_172638	ENSMUSG00000036097	Fam178a	3632432H19|6030443O07Rik|AU014917|Slf2	family with sequence similarity 178, member A	protein-coding	0.015000	0.388060	
mm_17811.1	chr2	33641002	33641202	-	1	NA	NA	NA	-91	NR_046275	100504399	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	0.100000	0.696517	
mm_6363.1	chr1	72212158	72212358	-	1	NA	NA	NA	49	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.175000	0.761194	
mm_68287.1	chr7	105633400	105633600	-	1	NA	NA	NA	71	NM_018880	55992	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	0.155000	0.825871	
mm_27066.1	chr3	27863364	27863564	-	1	NA	NA	NA	32904	NM_001164437	208613	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	0.015000	0.487562	
mm_98471.1	chr11	94950245	94950445	+	1	NA	NA	NA	14121	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.040000	0.587065	
mm_93227.1	chr10	95298540	95298740	-	1	NA	NA	NA	25069	NM_001330138	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.015000	0.388060	
mm_1000.1	chr1	58714082	58714282	+	1	NA	NA	NA	896	NM_207653	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.005000	0.393035	
mm_1559.1	chr1	74125452	74125652	+	1	NA	NA	NA	11	NM_001170641	435626	Mm.240447	NM_001034060	ENSMUSG00000061815	Rufy4	F930048N03Rik	RUN and FYVE domain containing 4	protein-coding	0.005000	0.577114	
mm_105112.1	chr11	100984773	100984973	-	1	NA	NA	NA	-14256	NM_008986	19285	Mm.21864	NM_008986	ENSMUSG00000004044	Ptrf	2310075E07Rik|AW546441|Cav-p60|Cavin	polymerase I and transcript release factor	protein-coding	0.030000	0.467662	
mm_131319.1	chr16	11984063	11984263	+	1	NA	NA	NA	50	NM_001174086	72555	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	0.065000	0.626866	
mm_81888.1	chr9	119402017	119402217	+	1	NA	NA	NA	-61	NM_001313757	11481	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	0.090000	0.741294	
mm_56252.1	chr6	90763844	90764044	-	1	NA	NA	NA	46179	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.010000	0.537313	
mm_168611.1	chr11	76357534	76357734	-	1	NA	NA	NA	41507	NM_008750	18230	Mm.27915	NM_008750	ENSMUSG00000020844	Nxn	l11Jus13	nucleoredoxin	protein-coding	0.040000	0.527363	
mm_116827.1	chr13	54611218	54611418	-	1	NA	NA	NA	55	NM_028870	74325	Mm.290026	NM_028870	ENSMUSG00000047547	Cltb	2310046E19Rik|lcb	clathrin, light polypeptide (Lcb)	protein-coding	0.145000	0.756219	
mm_55748.1	chr6	78371767	78371967	-	1	NA	NA	NA	982	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.020000	0.507463	
mm_156718.1	chrX	159705997	159706197	+	1	NA	NA	NA	-2504	NM_021389	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.015000	0.467662	
mm_100378.1	chr11	119270074	119270274	+	1	NA	NA	NA	2211	NM_008064	14387	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.030000	0.537313	
mm_15008.1	chr2	152518158	152518358	+	1	NA	NA	NA	3	NM_001037502	545475	Mm.389378	NM_001037502	ENSMUSG00000074679	Defb28	Gm1635|OTTMUSG00000015852	defensin beta 28	protein-coding	0.010000	0.517413	
mm_162303.1	chr1	36345013	36345213	-	1	NA	NA	NA	3645	NR_105863	102465541		NR_105863	ENSMUSG00000098680	Mir6898	Gm27816|mmu-mir-6898	microRNA 6898	ncRNA	0.015000	0.497512	-80(GCTTTTAGAAGG,+,0.00)
mm_138935.1	chr17	43908540	43908740	+	1	NA	NA	NA	-44359	NM_001286654	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.000000	0.338308	
mm_75425.1	chr8	47165986	47166186	-	1	NA	NA	NA	123316	NM_001286376	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.000000	0.373134	
mm_167623.1	chr9	59355773	59355973	+	1	NA	NA	NA	-2365	NM_175325	102774	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	0.005000	0.358209	
mm_95213.1	chr11	43681924	43682124	+	1	NA	NA	NA	26	NM_001164231	70802	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	0.115000	0.706468	
mm_32331.1	chr4	104367471	104367671	+	1	NA	NA	NA	33	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding	0.135000	0.776119	
mm_36803.1	chr4	103173351	103173551	-	1	NA	NA	NA	41433	NM_177732	242585	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.000000	0.417910	
mm_30112.1	chr3	139075004	139075204	-	1	NA	NA	NA	97	NM_145544	229877	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.130000	0.756219	
mm_27324.1	chr3	50367614	50367814	-	1	NA	NA	NA	75899	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.333333	
mm_27193.1	chr3	34757860	34758060	-	1	NA	NA	NA	-14115	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA	0.040000	0.557214	
mm_120324.1	chr14	63142965	63143165	+	1	NA	NA	NA	20603	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.412935	
mm_132825.1	chr16	45224488	45224688	+	1	NA	NA	NA	251	NM_177584	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.010000	0.462687	-32(GCATATATAGCT,+,0.00)
mm_96129.1	chr11	60830572	60830772	+	1	NA	NA	NA	41	NM_145428	216820	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.050000	0.492537	
mm_12233.1	chr2	68568521	68568721	+	1	NA	NA	NA	-13792	NM_177651	227998	Mm.67562	NM_177651	ENSMUSG00000053896	4933409G03Rik	-	RIKEN cDNA 4933409G03 gene	protein-coding	0.055000	0.527363	
mm_24290.1	chr3	89245865	89246065	+	1	NA	NA	NA	-68	NM_183037	360213	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.040000	0.547264	
mm_150908.1	chr19	45998048	45998248	+	1	NA	NA	NA	340	NM_198296	71617	Mm.210949	NM_198296	ENSMUSG00000039901	9130011E15Rik	AI431055|AW050122	RIKEN cDNA 9130011E15 gene	protein-coding	0.120000	0.751244	
mm_106150.1	chr11	116598367	116598567	-	1	NA	NA	NA	4780	NM_009591	11298	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0.000000	0.557214	
mm_115835.1	chr13	21286961	21287161	-	1	NA	NA	NA	5625	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.005000	0.393035	
mm_68427.1	chr7	109807859	109808059	-	1	NA	NA	NA	-26414	NM_020610	78593	Mm.275374	NM_020610	ENSMUSG00000034825	Nrip3	A330103B05Rik|D7H11orf14|ICRFP703B1614Q5.2	nuclear receptor interacting protein 3	protein-coding	0.010000	0.547264	
mm_73662.1	chr8	111034032	111034232	+	1	NA	NA	NA	290	NM_146217	234734	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	0.070000	0.651741	
mm_166445.1	chr5	137264302	137264502	+	1	NA	NA	NA	-23852	NM_009599	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.015000	0.472637	
mm_145927.1	chr18	67133387	67133587	+	1	NA	NA	NA	-73	NM_010307	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.080000	0.706468	
mm_152410.1	chr19	10605285	10605485	-	1	NA	NA	NA	-240	NM_015735	13194	Mm.289915	NM_015735	ENSMUSG00000024740	Ddb1	127kDa|AA408517|p127-Ddb1	damage specific DNA binding protein 1	protein-coding	0.065000	0.646766	
mm_83823.1	chr9	53936003	53936203	-	1	NA	NA	NA	39198	NM_177769	270162	Mm.259791	NM_177769	ENSMUSG00000041986	Elmod1	4831417L10|AI428506|AI834991	ELMO/CED-12 domain containing 1	protein-coding	0.030000	0.507463	
mm_165890.1	chr4	43966265	43966465	+	1	NA	NA	NA	8663	NM_027450	384009	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0.000000	0.577114	
mm_100724.1	chr11	3914043	3914243	-	1	NA	NA	NA	521	NM_153142	103710	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0.030000	0.537313	84(GTCTTTTTAAGG,-,0.00),86(CTTTTTAAGGAA,+,0.00)
mm_38330.1	chr4	137409678	137409878	-	1	NA	NA	NA	13	NM_001126318	242711	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011|OTTMUSG00000009877	chymotrypsin-like elastase family, member 3A	protein-coding	0.020000	0.577114	
mm_47205.1	chr5	120941191	120941391	-	1	NA	NA	NA	26473	NM_133893	100535	Mm.247620	NM_133893	ENSMUSG00000032623	Oas1d	AA536864|C85127|oasl8	2'-5' oligoadenylate synthetase 1D	protein-coding	0.005000	0.522388	
mm_26805.1	chr3	10137377	10137577	-	1	NA	NA	NA	46408	NM_001030305	18857	Mm.371777	NM_001030305	ENSMUSG00000052468	Pmp2	P2	peripheral myelin protein 2	protein-coding	0.015000	0.492537	
mm_137610.1	chr17	28239024	28239224	+	1	NA	NA	NA	6370	NM_011145	19015	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.010000	0.388060	
mm_153652.1	chr19	44394488	44394688	-	1	NA	NA	NA	13121	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.000000	0.373134	1(CTTTTTATGTGG,+,0.00)
mm_118184.1	chr13	107022289	107022489	-	1	NA	NA	NA	-181	NR_015471	100040322	Mm.133867	NR_015471		3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.190000	0.835821	
mm_157516.1	chrX	49788120	49788320	-	1	NA	NA	NA	23	NM_183336	209268	Mm.110505	NM_177591	ENSMUSG00000031111	Igsf1	5330413N23|5530402E03|AI747649|InhBP/p120|mKIAA0364	immunoglobulin superfamily, member 1	protein-coding	0.020000	0.517413	
mm_133020.1	chr16	56477779	56477979	+	1	NA	NA	NA	33	NM_001014424	320712	Mm.209236	NM_178790	ENSMUSG00000035258	Abi3bp	5033411B22Rik|AI506287|BG172926|D930038M13Rik|TARSH|eratin	ABI gene family, member 3 (NESH) binding protein	protein-coding	0.020000	0.577114	
mm_67710.1	chr7	89980153	89980353	-	1	NA	NA	NA	723	NM_021876	13626	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	ENSMUSG00000039373|l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	0.100000	0.666667	
mm_49476.1	chr6	29526647	29526847	+	1	NA	NA	NA	122	NM_012057	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.120000	0.776119	
mm_32715.1	chr4	116173317	116173517	+	1	NA	NA	NA	45	NM_001099295	67323	Mm.45442	NM_001099295	ENSMUSG00000078593	1700042G07Rik	-	RIKEN cDNA 1700042G07 gene	protein-coding	0.035000	0.606965	
mm_9515.1	chr1	173747985	173748185	-	1	NA	NA	NA	-6276	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.010000	0.378109	
mm_110742.1	chr12	69791259	69791459	-	1	NA	NA	NA	-652	NM_183294	71091	Mm.132325	NM_183294	ENSMUSG00000020990	Cdkl1	4933411O17Rik	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding	0.045000	0.547264	
mm_16847.1	chr2	11553827	11554027	-	1	NA	NA	NA	2	NM_001177758	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.125000	0.721393	
mm_101621.1	chr11	35879372	35879572	-	1	NA	NA	NA	-44944	NM_025936	104458	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.010000	0.402985	10(TCTTTTATGTGC,+,0.00)
mm_121573.1	chr14	122876744	122876944	+	1	NA	NA	NA	36321	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.010000	0.492537	
mm_146464.1	chr18	86711624	86711824	+	1	NA	NA	NA	-341	NM_172633	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.065000	0.597015	
mm_135786.1	chr16	57071268	57071468	-	1	NA	NA	NA	-22	NM_183281	69457	Mm.58105	NM_183281	ENSMUSG00000046748	Tmem45a2	2310005G13Rik	transmembrane protein 45A2	protein-coding	0.015000	0.447761	
mm_47972.1	chr5	135910053	135910253	-	1	NA	NA	NA	22234	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.030000	0.452736	
mm_135894.1	chr16	65105620	65105820	-	1	NA	NA	NA	64	NM_008310	15557	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	0.100000	0.681592	
mm_108751.1	chr12	88953325	88953525	+	1	NA	NA	NA	35	NM_172544	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.020000	0.502488	
mm_169190.1	chr13	66032102	66032302	+	1	NA	NA	NA	-81251	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.015000	0.527363	
mm_32226.1	chr4	101776142	101776342	+	1	NA	NA	NA	58835	NM_010704	16847	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.005000	0.318408	
mm_138503.1	chr17	35220207	35220407	+	1	NA	NA	NA	-14703	NM_001347351	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.025000	0.572139	
mm_170050.1	chr17	27354737	27354937	-	1	NA	NA	NA	-901	NR_106076	102465701		NR_106076	ENSMUSG00000106578	Mir7217	mmu-mir-7217	microRNA 7217	ncRNA	0.040000	0.467662	-18(CTCCTTAAAAGG,-,0.00),-17(TCCTTAAAAGGG,+,0.00),-16(CCTTAAAAGGGA,+,0.00)
mm_21664.1	chr2	164425209	164425409	-	1	NA	NA	NA	17879	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.015000	0.338308	-94(GTTTTTAAATGG,-,0.00)
mm_16895.1	chr2	13257814	13258014	-	1	NA	NA	NA	13501	NM_009105	20163	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.015000	0.298507	
mm_102418.1	chr11	59212423	59212623	-	1	NA	NA	NA	4162	NM_024210	67862	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	0.030000	0.577114	
mm_115715.1	chr13	15908655	15908855	-	1	NA	NA	NA	101512	NR_046131	328190	Mm.446957	NR_046131		A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0.000000	0.373134	
mm_147220.1	chr18	37999429	37999629	-	1	NA	NA	NA	-560	NM_001205336	106952	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	0.010000	0.577114	
mm_102382.1	chr11	58904051	58904251	-	1	NA	NA	NA	74	NM_011758	22698	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	0.090000	0.671642	
mm_122625.1	chr14	51145569	51145769	-	1	NA	NA	NA	1098	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.020000	0.537313	
mm_25966.1	chr3	132743547	132743747	+	1	NA	NA	NA	59503	NM_001163455	271981	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0.005000	0.363184	-55(TTCTCTAAAGGG,-,0.00)
mm_172421.1	chr7	26387240	26387440	+	1	NA	NA	NA	6903	NM_001042612	330490	Mm.212174	NM_194062	ENSMUSG00000040614	Nlrp9c	AA636537|BB062542|Nalp-zeta|Nalp9c	NLR family, pyrin domain containing 9C	protein-coding	0.030000	0.422886	
mm_62823.1	chr7	113512719	113512919	+	1	NA	NA	NA	-1015	NM_001285831	67420	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.010000	0.462687	-33(CAGTATATAAGC,-,0.00)
mm_141969.1	chr17	35131674	35131874	-	1	NA	NA	NA	-22	NM_018816	55938	Mm.2161	NM_018816	ENSMUSG00000024391	Apom	1190010O19Rik|G3a|NG20	apolipoprotein M	protein-coding	0.030000	0.537313	
mm_100065.1	chr11	115381820	115382020	+	1	NA	NA	NA	4	NM_001080929	237988	Mm.102872	NM_001080929	ENSMUSG00000050910	Cdr2l	D030068L24Rik|Gm21	cerebellar degeneration-related protein 2-like	protein-coding	0.125000	0.716418	
mm_150199.1	chr19	32757521	32757721	+	1	NA	NA	NA	44	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.110000	0.696517	
mm_156237.1	chrX	136138946	136139146	+	1	NA	NA	NA	1	NM_212457	406217	Mm.336245	NM_212457	ENSMUSG00000047844	Bex4	-	brain expressed X-linked 4	protein-coding	0.090000	0.706468	
mm_36816.1	chr4	104816320	104816520	-	1	NA	NA	NA	50103	NM_001316671	110382	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding	0.005000	0.552239	
mm_143457.1	chr17	70990456	70990656	-	1	NA	NA	NA	-40	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.120000	0.721393	
mm_4831.1	chr1	186587203	186587403	+	1	NA	NA	NA	-28622	NR_131158	320449	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.025000	0.482587	
mm_131835.1	chr16	22960733	22960933	+	1	NA	NA	NA	9761	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.010000	0.472637	
mm_69133.1	chr7	127027072	127027272	-	1	NA	NA	NA	-693	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.110000	0.781095	
mm_67762.1	chr7	92741361	92741561	-	1	NA	NA	NA	-2	NR_015510	666737	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	0.060000	0.601990	
mm_145095.1	chr18	43207590	43207790	+	1	NA	NA	NA	-7	NM_178749	269019	Mm.150401	NM_178749	ENSMUSG00000039954	Stk32a	A930015B13Rik|YANK1	serine/threonine kinase 32A	protein-coding	0.085000	0.696517	
mm_137213.1	chr17	24165164	24165364	+	1	NA	NA	NA	-1531	NM_172935	245847	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	0.005000	0.542289	
mm_3431.1	chr1	150101077	150101277	+	1	NA	NA	NA	1146	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.462687	
mm_15882.1	chr2	164839209	164839409	+	1	NA	NA	NA	5536	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.025000	0.577114	
mm_73233.1	chr8	104112874	104113074	+	1	NA	NA	NA	-7101	NR_131138	546096	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	-	predicted gene, 29682	ncRNA	0.015000	0.552239	
mm_125061.1	chr15	25940738	25940938	+	1	NA	NA	NA	12	NM_025459	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.025000	0.567164	
mm_116737.1	chr13	51748698	51748898	-	1	NA	NA	NA	44949	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.015000	0.616915	
mm_125724.1	chr15	73148926	73149126	+	1	NA	NA	NA	35921	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.010000	0.467662	
mm_80063.1	chr9	69453590	69453790	+	1	NA	NA	NA	7	NM_007585	12306	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	0.085000	0.716418	-27(GGGTATAAAAGC,-,0.00)
mm_93684.1	chr10	117815198	117815398	-	1	NA	NA	NA	-22593	NM_134010	103468	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.005000	0.268657	
mm_115051.1	chr13	100576195	100576395	+	1	NA	NA	NA	-23797	NM_008756	18260	Mm.4807	NM_008756	ENSMUSG00000021638	Ocln	AI503564|Ocl	occludin	protein-coding	0.000000	0.422886	-33(CTTTATAAATCC,+,0.00)
mm_51717.1	chr6	86849441	86849641	+	1	NA	NA	NA	24	NM_001040106	269774	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	0.170000	0.805970	
mm_45595.1	chr5	74702860	74703060	-	1	NA	NA	NA	-57	NM_001159577	16924	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.035000	0.557214	
mm_9694.1	chr1	178337550	178337750	-	1	NA	NA	NA	134	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.110000	0.681592	
mm_118719.1	chr14	22203107	22203307	+	1	NA	NA	NA	183495	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.422886	
mm_27769.1	chr3	72903560	72903760	-	1	NA	NA	NA	63206	NM_001081137	69983	Mm.261054	NM_001081137	ENSMUSG00000027790	Sis	2010204N08Rik|SI|Si-s	sucrase isomaltase (alpha-glucosidase)	protein-coding	0.010000	0.378109	85(CACTTTATAAGC,-,0.00)
mm_33326.1	chr4	129106674	129106874	+	1	NA	NA	NA	1226	NM_001290706	66260	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.010000	0.577114	
mm_140613.1	chr17	10840157	10840357	-	1	NA	NA	NA	-66	NM_027032	69310	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.105000	0.611940	
mm_165103.1	chr19	55893112	55893312	+	1	NA	NA	NA	-2109	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.015000	0.472637	
mm_148089.1	chr18	73754380	73754580	-	1	NA	NA	NA	-1	NM_053255	114615	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	0.165000	0.796020	
mm_93667.1	chr10	117709924	117710124	-	1	NA	NA	NA	734	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.100000	0.656716	
mm_165366.1	chr2	126602175	126602375	-	1	NA	NA	NA	16403	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.025000	0.482587	
mm_119432.1	chr14	46221015	46221215	+	1	NA	NA	NA	137088	NR_002875	218963	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	0.005000	0.358209	
mm_27451.1	chr3	52009134	52009334	-	1	NA	NA	NA	95772	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.005000	0.492537	-46(GTCTTTATAGAG,+,0.00),-46(GTCTTTATAGAG,-,0.00),-44(CTTTATAGAGCA,+,0.00)
mm_168509.1	chr1	156365960	156366160	+	1	NA	NA	NA	33930	NM_001198597	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.040000	0.492537	
mm_6794.1	chr1	84147295	84147495	-	1	NA	NA	NA	71566	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.393035	
mm_80870.1	chr9	98563659	98563859	+	1	NA	NA	NA	28	NM_015827	50797	Mm.400464	NM_015827	ENSMUSG00000032458	Copb2	AI256832	coatomer protein complex, subunit beta 2 (beta prime)	protein-coding	0.090000	0.666667	
mm_135835.1	chr16	58523519	58523719	-	1	NA	NA	NA	-307	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.055000	0.616915	
mm_16583.1	chr2	3713233	3713433	-	1	NA	NA	NA	-125	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.045000	0.601990	
mm_118692.1	chr14	22123782	22123982	+	1	NA	NA	NA	104170	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.010000	0.417910	
mm_62350.1	chr7	100498721	100498921	+	1	NA	NA	NA	5463	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.045000	0.601990	
mm_158987.1	chr1	132642598	132642798	-	1	NA	NA	NA	160	NM_001160316	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	0.045000	0.621891	
mm_13211.1	chr2	95481348	95481548	+	1	NA	NA	NA	-836721	NM_001289742	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.000000	0.393035	
mm_147403.1	chr18	44633656	44633856	-	1	NA	NA	NA	-27909	NR_026853	626275	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	0.015000	0.388060	
mm_115184.1	chr13	108449807	108450007	+	1	NA	NA	NA	133570	NM_178683	218581	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.010000	0.542289	
mm_122985.1	chr14	54984658	54984858	-	1	NA	NA	NA	-8982	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.025000	0.537313	
mm_54818.1	chr6	42351214	42351414	-	1	NA	NA	NA	1486	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.015000	0.562189	
mm_127648.1	chr15	102486984	102487184	+	1	NA	NA	NA	16452	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.000000	0.422886	
mm_71275.1	chr8	40919525	40919725	+	1	NA	NA	NA	-6608	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.015000	0.422886	
mm_78036.1	chr9	13835403	13835603	+	1	NA	NA	NA	7776	NM_176836	72826	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0.015000	0.432836	
mm_31682.1	chr4	62297935	62298135	+	1	NA	NA	NA	6488	NM_001290518	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.000000	0.437811	
mm_93486.1	chr10	111997023	111997223	-	1	NA	NA	NA	141	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.015000	0.497512	
mm_20420.1	chr2	129302863	129303063	-	1	NA	NA	NA	5593	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.030000	0.407960	
mm_1578.1	chr1	74281092	74281292	+	1	NA	NA	NA	2592	NM_174985	227289	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.020000	0.537313	
mm_138997.1	chr17	45555711	45555911	+	1	NA	NA	NA	111	NM_001304956	18037	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	0.075000	0.611940	
mm_81639.1	chr9	110880306	110880506	+	1	NA	NA	NA	84	NM_001146060	235633	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0.080000	0.671642	
mm_113666.1	chr13	42703984	42704184	+	1	NA	NA	NA	-5497	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.000000	0.318408	
mm_59374.1	chr7	25719080	25719280	+	1	NA	NA	NA	-127	NM_028771	52132	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.055000	0.482587	
mm_154523.1	chrM	13320	13520	-	1	NA	NA	NA	NA	NA									0.005000	0.353234	
mm_172677.1	chr8	51347154	51347354	+	1	NA	NA	NA	979142	NR_046067	100039954	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.075000	0.666667	
mm_110357.1	chr12	40037299	40037499	-	1	NA	NA	NA	-23	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.100000	0.716418	
mm_149783.1	chr19	23136771	23136971	+	1	NA	NA	NA	-4355	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.025000	0.532338	
mm_139691.1	chr17	57424783	57424983	+	1	NA	NA	NA	66197	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.407960	
mm_3661.1	chr1	153376870	153377070	+	1	NA	NA	NA	37263	NR_033736	626058	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0.000000	0.412935	
mm_81011.1	chr9	104063296	104063496	+	1	NA	NA	NA	-275	NM_025692	66663	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	0.060000	0.522388	-48(GTCTTTTAATGC,-,0.00)
mm_34983.1	chr4	156022448	156022648	+	1	NA	NA	NA	1276	NR_040563	100038526	Mm.191866	NR_040563		Gm10560	ENSMUSG00000073673	predicted gene 10560	ncRNA	0.025000	0.487562	
mm_144918.1	chr18	37644231	37644431	+	1	NA	NA	NA	-127	NM_175770	24074	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TATA-box binding protein associated factor 7	protein-coding	0.090000	0.502488	
mm_14658.1	chr2	137663330	137663530	+	1	NA	NA	NA	-546910	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.005000	0.432836	
mm_71617.1	chr8	57322126	57322326	+	1	NA	NA	NA	1243	NM_010402	15111	Mm.430844	NM_010402	ENSMUSG00000038193	Hand2	AI225906|AI661148|Ehand2|Hed|Th2|Thing2|bHLHa26|dHAND	heart and neural crest derivatives expressed transcript 2	protein-coding	0.110000	0.711443	
mm_1576.1	chr1	74277012	74277212	+	1	NA	NA	NA	-1488	NM_174985	227289	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.015000	0.611940	
mm_88881.1	chr10	81123722	81123922	+	1	NA	NA	NA	-12449	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.020000	0.537313	
mm_121758.1	chr14	19643092	19643292	-	1	NA	NA	NA	-40605	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.000000	0.412935	2(AGCTTTATAAAC,-,0.00),4(CTTTATAAACTC,+,0.00)
mm_147946.1	chr18	66292558	66292758	-	1	NA	NA	NA	-820	NM_178793	320924	Mm.442049	NM_178793	ENSMUSG00000046318	Ccbe1	4933426F18Rik|9430093N24Rik|mKIAA1983	collagen and calcium binding EGF domains 1	protein-coding	0.040000	0.587065	
mm_138449.1	chr17	35135638	35135838	+	1	NA	NA	NA	24	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.115000	0.636816	
mm_86998.1	chr10	26772446	26772646	+	1	NA	NA	NA	34	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.035000	0.572139	
mm_117900.1	chr13	99425820	99426020	-	1	NA	NA	NA	-13094	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.030000	0.522388	
mm_86782.1	chr10	20170924	20171124	+	1	NA	NA	NA	22104	NM_001198635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.010000	0.537313	
mm_126796.1	chr15	86436004	86436204	+	1	NA	NA	NA	221645	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.000000	0.338308	13(GTTTTTATGGGA,+,0.00)
mm_96879.1	chr11	70214944	70215144	+	1	NA	NA	NA	1134	NM_153081	216867	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0.050000	0.636816	
mm_151700.1	chr19	4440353	4440553	-	1	NA	NA	NA	894	NR_045989	319314	Mm.393810	NR_045989	ENSMUSG00000087132	A930001C03Rik	-	RIKEN cDNA A930001C03 gene	ncRNA	0.030000	0.552239	
mm_23056.1	chr3	35754061	35754261	+	1	NA	NA	NA	23	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.130000	0.756219	81(GGGTAGAAAAGC,-,0.00)
mm_1832.1	chr1	82724866	82725066	+	1	NA	NA	NA	76	NM_001310699	75734	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	0.140000	0.716418	
mm_77363.1	chr8	119809861	119810061	-	1	NA	NA	NA	30618	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.015000	0.582090	
mm_149611.1	chr19	16385699	16385899	+	1	NA	NA	NA	-49868	NM_008137	14675	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.015000	0.398010	-57(GCTTTTATACAA,+,0.00),10(GCTTTTATACGA,+,0.00)
mm_115691.1	chr13	14026620	14026820	-	1	NA	NA	NA	12918	NR_130788	70430	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	0.005000	0.358209	
mm_141235.1	chr17	27436773	27436973	-	1	NA	NA	NA	66660	NM_001013385	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.005000	0.452736	
mm_7756.1	chr1	131136208	131136408	-	1	NA	NA	NA	1926	NM_145508	226419	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.015000	0.462687	
mm_5779.1	chr1	51513078	51513278	-	1	NA	NA	NA	-34779	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.015000	0.527363	
mm_10239.1	chr2	8026804	8027004	+	1	NA	NA	NA	-630706	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.025000	0.457711	
mm_18610.1	chr2	68378212	68378412	-	1	NA	NA	NA	93669	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.015000	0.442786	
mm_150627.1	chr19	41339599	41339799	+	1	NA	NA	NA	45371	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.020000	0.532338	
mm_76924.1	chr8	105933833	105934033	-	1	NA	NA	NA	-71	NM_023182	109660	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.005000	0.482587	
mm_105689.1	chr11	107733955	107734155	-	1	NA	NA	NA	-17579	NM_007582	12299	Mm.57093	NM_007582	ENSMUSG00000020722	Cacng1	-	calcium channel, voltage-dependent, gamma subunit 1	protein-coding	0.015000	0.557214	
mm_120890.1	chr14	75834860	75835060	+	1	NA	NA	NA	10004	NR_045294	100043189	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.020000	0.552239	
mm_65302.1	chr7	24671960	24672160	-	1	NA	NA	NA	-10	NM_019981	56746	Mm.23385	NM_019981	ENSMUSG00000062773	Tex101	1700008H15Rik|AI429076|TES101RP	testis expressed gene 101	protein-coding	0.055000	0.547264	87(TGGTTTAAAAAG,-,0.00)
mm_161814.1	chr17	68273727	68273927	+	1	NA	NA	NA	30	NM_177278	320858	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	l(3)mbt-like 4 (Drosophila)	protein-coding	0.100000	0.731343	
mm_133649.1	chr16	91798358	91798558	+	1	NA	NA	NA	69087	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.015000	0.577114	
mm_141523.1	chr17	31766843	31767043	-	1	NA	NA	NA	88849	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.055000	0.626866	-33(GGCCATTAAAAG,-,0.00),-31(CCATTAAAAGGC,+,0.00)
mm_74648.1	chr8	13389598	13389798	-	1	NA	NA	NA	7080	NM_009724	11945	Mm.154039	NM_009724	ENSMUSG00000031449	Atp4b	AV080843	ATPase, H+/K+ exchanging, beta polypeptide	protein-coding	0.020000	0.547264	
mm_163822.1	chr14	19416706	19416906	+	1	NA	NA	NA	185781	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.343284	
mm_54042.1	chr6	13650879	13651079	-	1	NA	NA	NA	26987	NM_175312	101148	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	0.000000	0.412935	
mm_149382.1	chr19	11381720	11381920	+	1	NA	NA	NA	6332	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.005000	0.422886	
mm_124261.1	chr14	102978032	102978232	-	1	NA	NA	NA	4500	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.010000	0.308458	31(CCTTTAATACTG,+,0.00)
mm_63200.1	chr7	125707811	125708011	+	1	NA	NA	NA	35	NM_001081022	233865	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	0.090000	0.661692	
mm_104354.1	chr11	94299923	94300123	-	1	NA	NA	NA	21888	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.010000	0.398010	
mm_98699.1	chr11	96303524	96303724	+	1	NA	NA	NA	112	NM_008268	15413	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	0.045000	0.457711	
mm_171338.1	chr4	102875673	102875873	-	1	NA	NA	NA	-110606	NM_001163767	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.030000	0.487562	
mm_102535.1	chr11	61174896	61175096	-	1	NA	NA	NA	63	NM_001004143	216825	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	0.125000	0.716418	
mm_77444.1	chr8	121792105	121792305	-	1	NA	NA	NA	37364	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.020000	0.487562	
mm_19637.1	chr2	102829073	102829273	-	1	NA	NA	NA	72492	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.000000	0.388060	
mm_29853.1	chr3	130007454	130007654	-	1	NA	NA	NA	-37348	NM_001293644	66815	Mm.31056	NM_025779	ENSMUSG00000027994	Ccdc109b	9030408N13Rik|MCUb	coiled-coil domain containing 109B	protein-coding	0.005000	0.452736	
mm_27355.1	chr3	50417401	50417601	-	1	NA	NA	NA	26112	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.288557	
mm_70544.1	chr8	13052187	13052387	+	1	NA	NA	NA	-8621	NM_025834	66901	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.000000	0.393035	
mm_60913.1	chr7	46796011	46796211	+	1	NA	NA	NA	17	NM_008186	14884	Mm.22700	NM_008186	ENSMUSG00000006599	Gtf2h1	62kDa|AW743425|AW822074|BTF2 p62|C77871|p62	general transcription factor II H, polypeptide 1	protein-coding	0.125000	0.741294	
mm_149642.1	chr19	17400163	17400363	+	1	NA	NA	NA	6220	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.015000	0.462687	
mm_69730.1	chr7	140856190	140856390	-	1	NA	NA	NA	93	NM_018742	54399	Mm.155696	NM_018742	ENSMUSG00000025484	Bet1l	2610021K23Rik|Gs15	Bet1 golgi vesicular membrane trafficking protein like	protein-coding	0.065000	0.587065	
mm_123185.1	chr14	57826094	57826294	-	1	NA	NA	NA	-31	NM_198605	219114	Mm.30173	NM_198605	ENSMUSG00000021965	Ska3	F630043A04Rik	spindle and kinetochore associated complex subunit 3	protein-coding	0.120000	0.666667	
mm_97964.1	chr11	83746898	83747098	+	1	NA	NA	NA	58	NM_183249	66107	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.015000	0.577114	
mm_15776.1	chr2	164333263	164333463	+	1	NA	NA	NA	598	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.040000	0.482587	
mm_71988.1	chr8	70616575	70616775	+	1	NA	NA	NA	-169	NM_153074	211228	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0.025000	0.542289	
mm_154454.1	chrM	2247	2447	-	1	NA	NA	NA	NA	NA									0.040000	0.393035	-52(TCTTAAATAGGA,+,0.00)
mm_40824.1	chr5	72647732	72647932	+	1	NA	NA	NA	36	NM_001081205	70701	Mm.38884	NM_001081205	ENSMUSG00000067219	Nipal1	3830408G10Rik|Npal1	NIPA-like domain containing 1	protein-coding	0.060000	0.651741	
mm_51015.1	chr6	65023286	65023486	+	1	NA	NA	NA	-19281	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.010000	0.467662	-14(AACCATAAAAGC,-,0.00)
mm_97635.1	chr11	78961973	78962173	+	1	NA	NA	NA	22851	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.000000	0.388060	-4(CACCATATATGC,-,0.00)
mm_115343.1	chr13	112508909	112509109	+	1	NA	NA	NA	44939	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.025000	0.497512	
mm_149343.1	chr19	10850359	10850559	+	1	NA	NA	NA	7915	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.005000	0.393035	
mm_158953.1	chr1	87583955	87584155	+	1	NA	NA	NA	33	NM_001160165	23956	Mm.143717	NM_015750	ENSMUSG00000079434	Neu2	MBS|MSS|MTS	neuraminidase 2	protein-coding	0.005000	0.512438	
mm_9979.1	chr1	191225179	191225379	-	1	NA	NA	NA	-41946	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.005000	0.507463	
mm_85322.1	chr9	101251747	101251947	-	1	NA	NA	NA	-15	NM_001161362	235542	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0.105000	0.766169	
mm_92072.1	chr10	62602176	62602376	-	1	NA	NA	NA	22	NM_019553	56200	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0.095000	0.636816	
mm_111243.1	chr12	84787054	84787254	-	1	NA	NA	NA	13884	NM_028863	74316	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0.010000	0.522388	
mm_85290.1	chr9	99876105	99876305	-	1	NA	NA	NA	-35	NM_011440	20669	Mm.261595	NM_011440	ENSMUSG00000053747	Sox14	-	SRY (sex determining region Y)-box 14	protein-coding	0.085000	0.671642	
mm_125901.1	chr15	75969079	75969279	+	1	NA	NA	NA	-6	NM_001081065	69020	Mm.294295	NM_001081065	ENSMUSG00000034429	Zfp707	1500031N24Rik|AI451708|AW495315	zinc finger protein 707	protein-coding	0.090000	0.606965	
mm_51745.1	chr6	87375715	87375915	+	1	NA	NA	NA	2450	NM_025467	66284	Mm.46446	NM_025467	ENSMUSG00000030049	Gkn2	1810036H07Rik|Bricd1b	gastrokine 2	protein-coding	0.030000	0.442786	
mm_164214.1	chr15	83473996	83474196	-	1	NA	NA	NA	-9490	NM_001159509	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.025000	0.577114	
mm_168506.1	chr1	153620622	153620822	-	1	NA	NA	NA	-32315	NM_026380	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding	0.030000	0.427861	
mm_105358.1	chr11	103101492	103101692	-	1	NA	NA	NA	66	NM_152813	72469	Mm.264743	NM_152813	ENSMUSG00000020937	Plcd3	2610205J15Rik|mKIAA1964	phospholipase C, delta 3	protein-coding	0.095000	0.681592	
mm_106028.1	chr11	116076907	116077107	-	1	NA	NA	NA	954	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.020000	0.621891	
mm_78448.1	chr9	32224213	32224413	+	1	NA	NA	NA	64	NM_177379	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.005000	0.547264	
mm_11804.1	chr2	43895116	43895316	+	1	NA	NA	NA	146392	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.000000	0.293532	
mm_87867.1	chr10	61297717	61297917	+	1	NA	NA	NA	-19	NM_011073	18646	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	0.020000	0.562189	-32(CATTTTAAAAGC,-,0.00)
mm_141124.1	chr17	26099158	26099358	-	1	NA	NA	NA	-3788	NM_019731	56520	Mm.41787	NM_019731	ENSMUSG00000024177	Nme4	2610027N22Rik|2810024O08Rik|5730493H09Rik|NM23-M4|Nm23M4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding	0.035000	0.487562	
mm_136926.1	chr17	13849953	13850153	+	1	NA	NA	NA	-88659	NM_022311	21646	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0.010000	0.402985	
mm_116805.1	chr13	54189892	54190092	-	1	NA	NA	NA	-2137	NM_001010973	15466	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	-	histamine receptor H2	protein-coding	0.030000	0.472637	
mm_22124.1	chr2	170252700	170252900	-	1	NA	NA	NA	-103561	NR_040610	73303	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.035000	0.507463	
mm_146065.1	chr18	69925457	69925657	+	1	NA	NA	NA	-2	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.055000	0.661692	
mm_64616.1	chr7	3578146	3578346	-	1	NA	NA	NA	37911	NM_175632	232790	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	0.000000	0.393035	
mm_167863.1	chrX	20239289	20239489	+	1	NA	NA	NA	52375	NM_177353	236727	Mm.132983	NM_177353	ENSMUSG00000037341	Slc9a7	A530087D17Rik|NHE7	solute carrier family 9 (sodium/hydrogen exchanger), member 7	protein-coding	0.030000	0.432836	
mm_11945.1	chr2	52892021	52892221	+	1	NA	NA	NA	34253	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.005000	0.328358	
mm_95586.1	chr11	53299790	53299990	+	1	NA	NA	NA	589	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.090000	0.676617	
mm_130733.1	chr15	101248622	101248822	-	1	NA	NA	NA	-18124	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.005000	0.432836	-36(CTCTATAAATAC,-,0.00),52(GCTTAAAGAGAC,+,0.00)
mm_163712.1	chr13	109726348	109726548	-	1	NA	NA	NA	-177361	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.015000	0.452736	
mm_134253.1	chr16	13730352	13730552	-	1	NA	NA	NA	32	NR_110990	26565	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	0.035000	0.601990	
mm_133145.1	chr16	70313872	70314072	+	1	NA	NA	NA	23	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.085000	0.736318	59(CGCTATAAAGGG,-,0.00)
mm_106649.1	chr11	121063429	121063629	-	1	NA	NA	NA	40	NM_026907	58210	Mm.116986	NM_026907	ENSMUSG00000039364	Sectm1b	1810003C24Rik|K12|Sectm1	secreted and transmembrane 1B	protein-coding	0.010000	0.597015	
mm_129035.1	chr15	74994842	74995042	-	1	NA	NA	NA	3089	NM_001271417	110454	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	0.000000	0.472637	
mm_91577.1	chr10	40129204	40129404	-	1	NA	NA	NA	12950	NM_028247	72472	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.000000	0.422886	
mm_168204.1	chr10	69911969	69912169	+	1	NA	NA	NA	-13463	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.015000	0.452736	
mm_28456.1	chr3	90678632	90678832	-	1	NA	NA	NA	9661	NM_013650	20201	Mm.21567	NM_013650	ENSMUSG00000056054	S100a8	60B8Ag|AI323541|B8Ag|CFAg|CP-10|Caga|MRP8|p8	S100 calcium binding protein A8 (calgranulin A)	protein-coding	0.005000	0.477612	
mm_2547.1	chr1	107589868	107590068	+	1	NA	NA	NA	-38	NM_011459	20725	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	0.015000	0.601990	
mm_158854.1	chrX	169994120	169994320	-	1	NA	NA	NA	-15303	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.085000	0.696517	
mm_21860.1	chr2	165884595	165884795	-	1	NA	NA	NA	143	NM_001252584	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.045000	0.497512	
mm_14099.1	chr2	125235753	125235953	+	1	NA	NA	NA	-11395	NM_001159646	110074	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0.015000	0.527363	
mm_168669.1	chr11	91706106	91706306	-	1	NA	NA	NA	-128651	NM_028547	73470	Mm.67677	NM_028547	ENSMUSG00000046755	Kif2b	1700063D03Rik	kinesin family member 2B	protein-coding	0.000000	0.308458	
mm_160807.1	chr11	11489181	11489381	+	1	NA	NA	NA	15	NM_028669	73862	Mm.159077	NM_028669	ENSMUSG00000020191	4930415F15Rik	-	RIKEN cDNA 4930415F15 gene	protein-coding	0.010000	0.482587	
mm_141504.1	chr17	31636489	31636689	-	1	NA	NA	NA	616	NM_144855	12411	Mm.206417	NM_144855	ENSMUSG00000024039	Cbs	AI047524|AI303044|HIP4	cystathionine beta-synthase	protein-coding	0.070000	0.626866	
mm_48747.1	chr5	147894693	147894893	-	1	NA	NA	NA	9	NM_027872	71706	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	0.090000	0.651741	
mm_46488.1	chr5	105132074	105132274	-	1	NA	NA	NA	7378	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.303483	
mm_67718.1	chr7	90024522	90024722	-	1	NA	NA	NA	-4537	NR_110365	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	0.000000	0.437811	-32(CTTTATATAAAC,+,0.00)
mm_89639.1	chr10	96621291	96621491	+	1	NA	NA	NA	4390	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.005000	0.233831	10(TAATTTAAAAGG,-,0.00)
mm_149988.1	chr19	29251764	29251964	+	1	NA	NA	NA	61	NM_008413	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.155000	0.810945	
mm_74630.1	chr8	13175232	13175432	-	1	NA	NA	NA	13766	NR_035494	100316713		NR_035494	ENSMUSG00000088054	Mir1968	mir-1968|mmu-mir-1968	microRNA 1968	ncRNA	0.035000	0.497512	
mm_101371.1	chr11	23770670	23770870	-	1	NA	NA	NA	200	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.080000	0.681592	
mm_85624.1	chr9	107614981	107615181	-	1	NA	NA	NA	-5840	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.005000	0.567164	
mm_53483.1	chr6	135011525	135011725	+	1	NA	NA	NA	13	NM_026360	67755	Mm.166524	NM_026360	ENSMUSG00000030204	Ddx47	4930588A18Rik|C77285	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	protein-coding	0.075000	0.597015	
mm_30689.1	chr4	11485924	11486124	+	1	NA	NA	NA	66	NM_001347055	66185	Mm.331487	NM_001081183	ENSMUSG00000040720	1110037F02Rik	4930422M05Rik|Kiaa1429|mKIAA1429	RIKEN cDNA 1110037F02 gene	protein-coding	0.080000	0.597015	
mm_91164.1	chr10	20665317	20665517	-	1	NA	NA	NA	59661	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.000000	0.417910	
mm_147867.1	chr18	64457781	64457981	-	1	NA	NA	NA	31185	NM_007998	14151	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0.025000	0.417910	
mm_135042.1	chr16	33023830	33024030	-	1	NA	NA	NA	32256	NM_178378	69707	Mm.227918	NM_178378	ENSMUSG00000035578	Iqcg	2400003L07Rik|G1-374-12|esgd12d|repro1|stubby12d	IQ motif containing G	protein-coding	0.015000	0.527363	
mm_155454.1	chrX	73495782	73495982	+	1	NA	NA	NA	-7204	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.005000	0.517413	
mm_146188.1	chr18	76035313	76035513	+	1	NA	NA	NA	63058	NR_045365	73009	Mm.443541	NR_045365		2900057B20Rik	-	RIKEN cDNA 2900057B20 gene	ncRNA	0.015000	0.572139	
mm_133030.1	chr16	57331855	57332055	+	1	NA	NA	NA	-21322	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.025000	0.582090	
mm_125097.1	chr15	27571487	27571687	+	1	NA	NA	NA	93	NR_106065	102466808		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0.035000	0.552239	
mm_157464.1	chrX	44790224	44790424	-	1	NA	NA	NA	-127	NM_178739	245404	Mm.55685	NM_178739	ENSMUSG00000045284	Dcaf12l1	9330180J20|A230038L21Rik|Decaf12l1|Wdr40b	DDB1 and CUL4 associated factor 12-like 1	protein-coding	0.020000	0.517413	58(TCATTTAAAGTC,+,0.00)
mm_113258.1	chr13	28257495	28257695	+	1	NA	NA	NA	115111	NM_023746	28078	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0.025000	0.417910	
mm_78234.1	chr9	21616072	21616272	+	1	NA	NA	NA	3	NM_001174078	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.150000	0.761194	
mm_102603.1	chr11	62392512	62392712	-	1	NA	NA	NA	45903	NM_001252313	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.005000	0.368159	43(GTTTATAAAGAC,+,0.00)
mm_35546.1	chr4	41498132	41498332	-	1	NA	NA	NA	4843	NM_001085515	329828	Mm.27054	NM_001085515	ENSMUSG00000046312	AI464131	AA408153|AI604836|Gm762|Kiaa1161|NET37	expressed sequence AI464131	protein-coding	0.070000	0.621891	
mm_24026.1	chr3	87535624	87535824	+	1	NA	NA	NA	10146	NM_012051	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.045000	0.616915	
mm_55143.1	chr6	51464362	51464562	-	1	NA	NA	NA	5432	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.005000	0.417910	
mm_152374.1	chr19	10223469	10223669	-	1	NA	NA	NA	17179	NM_001033481	225908	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.015000	0.547264	
mm_107390.1	chr12	33314175	33314375	+	1	NA	NA	NA	11760	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.030000	0.557214	-21(CTCTCTTAAAGG,-,0.00),-20(TCTCTTAAAGGG,+,0.00)
mm_25346.1	chr3	106785315	106785515	+	1	NA	NA	NA	4734	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.005000	0.388060	
mm_52757.1	chr6	120773535	120773735	+	1	NA	NA	NA	-133	NM_001081048	71803	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	0.010000	0.482587	55(GTCTTTATAGGA,+,0.00),55(GTCTTTATAGGA,-,0.00)
mm_95200.1	chr11	43444661	43444861	+	1	NA	NA	NA	11030	NM_198936	193116	Mm.28200	NM_148673	ENSMUSG00000020409	Slu7	AU018913|D11Ertd730e|D3Bwg0878e	SLU7 splicing factor homolog (S. cerevisiae)	protein-coding	0.015000	0.467662	
mm_143219.1	chr17	63141070	63141270	-	1	NA	NA	NA	171803	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.000000	0.333333	
mm_59093.1	chr7	19696467	19696667	+	1	NA	NA	NA	1831	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.055000	0.621891	
mm_71245.1	chr8	40913879	40914079	+	1	NA	NA	NA	-12254	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.030000	0.542289	
mm_38081.1	chr4	134128590	134128790	-	1	NA	NA	NA	63	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.105000	0.686567	
mm_146104.1	chr18	74216032	74216232	+	1	NA	NA	NA	-80	NM_028868	74322	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.130000	0.636816	
mm_60648.1	chr7	44854502	44854702	+	1	NA	NA	NA	-2544	NM_021549	59047	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0.095000	0.671642	
mm_57715.1	chr6	128788416	128788616	-	1	NA	NA	NA	125	NM_008527	17059	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0.005000	0.497512	
mm_105842.1	chr11	113683954	113684154	-	1	NA	NA	NA	97	NM_138598	28081	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0.150000	0.766169	
mm_136553.1	chr17	3114835	3115035	+	1	NA	NA	NA	-37	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.160000	0.736318	
mm_146958.1	chr18	33213677	33213877	-	1	NA	NA	NA	85	NM_001347624	170459	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	0.070000	0.646766	
mm_135864.1	chr16	60605452	60605652	-	1	NA	NA	NA	-21	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0.025000	0.592040	
mm_49559.1	chr6	30560410	30560610	+	1	NA	NA	NA	-7859	NM_027926	71791	Mm.105759	NM_027926	ENSMUSG00000039070	Cpa4	1110019K20Rik|AV009555	carboxypeptidase A4	protein-coding	0.025000	0.477612	
mm_151403.1	chr19	56510586	56510786	+	1	NA	NA	NA	37536	NM_018831	55947	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0.015000	0.492537	78(ATCTTTTTAAGG,-,0.00),80(CTTTTTAAGGGG,+,0.00)
mm_55871.1	chr6	83506733	83506933	-	1	NA	NA	NA	136	NM_013764	27369	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0.115000	0.661692	
mm_77276.1	chr8	116673073	116673273	-	1	NA	NA	NA	59818	NM_029441	75796	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.015000	0.477612	
mm_48241.1	chr5	137741509	137741709	-	1	NA	NA	NA	-441	NM_001347505	243300	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	0.075000	0.721393	
mm_25888.1	chr3	131106086	131106286	+	1	NA	NA	NA	-4111	NM_010703	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.150000	0.731343	-35(GCCGATAAAAGG,-,0.00)
mm_47291.1	chr5	122240755	122240955	-	1	NA	NA	NA	23605	NR_104441	654470	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.035000	0.547264	-62(GCTTTACAAGCC,+,0.00)
mm_23030.1	chr3	34650082	34650282	+	1	NA	NA	NA	187	NM_011443	20674	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0.055000	0.532338	-97(GCCTCTTTAAGA,-,0.00)
mm_114365.1	chr13	62129809	62130009	+	1	NA	NA	NA	19	NM_001039239	630579	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 80	protein-coding	0.035000	0.547264	
mm_30991.1	chr4	36952850	36953050	+	1	NA	NA	NA	-1206	NM_001165999	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.020000	0.502488	
mm_50152.1	chr6	41544727	41544927	+	1	NA	NA	NA	23051	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.422886	
mm_31669.1	chr4	60004750	60004950	+	1	NA	NA	NA	1301	NM_001081285	620807	Mm.464562	NM_001081285	ENSMUSG00000078689	Mup6	Gm12544|Mup2|OTTMUSG00000007423	major urinary protein 6	protein-coding	0.010000	0.368159	
mm_43878.1	chr5	143755644	143755844	+	1	NA	NA	NA	-2610	NR_015486	320064	Mm.332820	NR_015486		D130017N08Rik	1700012G11Rik	RIKEN cDNA D130017N08 gene	ncRNA	0.025000	0.512438	
mm_11722.1	chr2	36251646	36251846	+	1	NA	NA	NA	21320	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.005000	0.412935	-18(GCCTATATAGTG,+,0.00)
mm_137014.1	chr17	17831207	17831407	+	1	NA	NA	NA	332	NM_001162909	75202	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0.000000	0.492537	
mm_998.1	chr1	58713280	58713480	+	1	NA	NA	NA	94	NM_207653	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.065000	0.557214	
mm_86226.1	chr9	120135741	120135941	-	1	NA	NA	NA	5407	NR_002902	104433	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	0.020000	0.562189	
mm_22365.1	chr2	181043498	181043698	-	1	NA	NA	NA	-4421	NM_015730	11438	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	0.010000	0.557214	
mm_101909.1	chr11	49671156	49671356	-	1	NA	NA	NA	7661	NM_170727	68662	Mm.22802	NM_054037	ENSMUSG00000064057	Scgb3a1	HIN-1|LuLeu2|Pnsp2|UGRP2|Utgrp2	secretoglobin, family 3A, member 1	protein-coding	0.025000	0.358209	76(TGGTATAAAAAC,-,0.00)
mm_155466.1	chrX	73635466	73635666	+	1	NA	NA	NA	-3875	NM_029352	75590	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	0.070000	0.681592	
mm_143532.1	chr17	73913847	73914047	-	1	NA	NA	NA	36249	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.020000	0.587065	
mm_29970.1	chr3	133544157	133544357	-	1	NA	NA	NA	133	NM_001346736	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.060000	0.567164	
mm_145977.1	chr18	67935892	67936092	+	1	NA	NA	NA	2735	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.010000	0.497512	
mm_99619.1	chr11	104632193	104632393	+	1	NA	NA	NA	24293	NM_016780	16416	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding	0.030000	0.582090	
mm_103349.1	chr11	74770628	74770828	-	1	NA	NA	NA	-135	NM_026197	67493	Mm.45748	NM_026197	ENSMUSG00000010554	Mettl16	2610100D03Rik|2810013M15Rik|A830095F14Rik|AI846133|Mett10d	methyltransferase like 16	protein-coding	0.055000	0.552239	
mm_126972.1	chr15	93398333	93398533	+	1	NA	NA	NA	-31	NM_001285863	223828	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.165000	0.741294	-77(GCCTTTAGGGCG,+,0.00)
mm_19082.1	chr2	77946252	77946452	-	1	NA	NA	NA	4	NM_001290740	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	0.045000	0.447761	
mm_79707.1	chr9	61200280	61200480	+	1	NA	NA	NA	61865	NR_045705	619328	Mm.325722	NR_045705	ENSMUSG00000110998	I730028E13Rik	-	RIKEN cDNA I730028E13 gene	ncRNA	0.015000	0.482587	
mm_68376.1	chr7	109083211	109083411	-	1	NA	NA	NA	13	NM_001038624	320360	Mm.71007	NM_178780	ENSMUSG00000048330	Ric3	E130307J04Rik	RIC3 acetylcholine receptor chaperone	protein-coding	0.130000	0.706468	
mm_84873.1	chr9	79718471	79718671	-	1	NA	NA	NA	151	NM_001290308	12816	Mm.3819	NM_007730	ENSMUSG00000032332	Col12a1	-	collagen, type XII, alpha 1	protein-coding	0.110000	0.711443	
mm_35428.1	chr4	35795102	35795302	-	1	NA	NA	NA	50002	NM_001166001	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.000000	0.393035	
mm_166221.1	chr5	64864677	64864877	-	1	NA	NA	NA	61254	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.010000	0.587065	
mm_157675.1	chrX	59165991	59166191	-	1	NA	NA	NA	-3	NM_001290415	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding	0.015000	0.388060	37(TCTTATAAAGAA,+,0.00)
mm_52671.1	chr6	117907028	117907228	+	1	NA	NA	NA	346	NM_133834	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.085000	0.676617	
mm_74688.1	chr8	14994393	14994593	-	1	NA	NA	NA	-16532	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.045000	0.611940	
mm_50664.1	chr6	51523888	51524088	+	1	NA	NA	NA	85	NM_001127349	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.165000	0.756219	
mm_10354.1	chr2	11689976	11690176	+	1	NA	NA	NA	-15217	NM_001271498	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.000000	0.402985	-79(GCTTTAATGGGA,+,0.00)
mm_138108.1	chr17	34121298	34121498	+	1	NA	NA	NA	349	NM_010238	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.035000	0.616915	
mm_154660.1	chrX	7842470	7842670	+	1	NA	NA	NA	488	NM_001290537	54644	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	0.115000	0.711443	
mm_67932.1	chr7	99980313	99980513	-	1	NA	NA	NA	45	NM_175388	108937	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.120000	0.711443	
mm_171755.1	chr5	105022413	105022613	+	1	NA	NA	NA	31048	NM_029509	76074	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0.035000	0.621891	
mm_59414.1	chr7	27121529	27121729	+	1	NA	NA	NA	1674	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.015000	0.592040	
mm_27195.1	chr3	34761324	34761524	-	1	NA	NA	NA	-10651	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA	0.005000	0.472637	-36(TTTTTTAAACCC,+,0.00)
mm_150100.1	chr19	29474151	29474351	+	1	NA	NA	NA	47736	NR_015567	77779	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.005000	0.363184	
mm_14558.1	chr2	134786086	134786286	+	1	NA	NA	NA	22	NM_001145830	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding	0.115000	0.731343	
mm_14341.1	chr2	129593011	129593211	+	1	NA	NA	NA	-58	NM_001291019	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.160000	0.825871	
mm_30042.1	chr3	135696745	135696945	-	1	NA	NA	NA	-5298	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.005000	0.447761	
mm_153185.1	chr19	34499244	34499444	-	1	NA	NA	NA	-24209	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.000000	0.378109	
mm_159482.1	chr4	40472991	40473191	+	1	NA	NA	NA	-39	NM_001166009	320500	Mm.156365	NM_177175	ENSMUSG00000046593	Tmem215	A930001M12Rik	transmembrane protein 215	protein-coding	0.045000	0.601990	
mm_8139.1	chr1	136260303	136260503	-	1	NA	NA	NA	470	NM_001101516	383563	Mm.40367	NM_001101516	ENSMUSG00000052759	Gpr25	Gm1300	G protein-coupled receptor 25	protein-coding	0.155000	0.776119	
mm_56309.1	chr6	92026349	92026549	-	1	NA	NA	NA	47484	NM_172731	232237	Mm.295740	NM_172731	ENSMUSG00000034037	Fgd5	C330025N11Rik|ZFYVE23|mFLJ00274	FYVE, RhoGEF and PH domain containing 5	protein-coding	0.010000	0.517413	28(TCTTTTAGGGAG,+,0.00)
mm_149265.1	chr19	10577350	10577550	+	1	NA	NA	NA	-64	NR_126092	72982	Mm.391194	NM_028411	ENSMUSG00000024666	Tmem138	1700113I01Rik|2900055D14Rik	transmembrane protein 138	protein-coding	0.060000	0.601990	-30(GCCTATAAAAAT,-,0.00)
mm_141786.1	chr17	34304767	34304967	-	1	NA	NA	NA	-1000	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.005000	0.417910	
mm_15149.1	chr2	153988412	153988612	+	1	NA	NA	NA	13567	NM_001080811	545477	Mm.379973	NM_001080811	ENSMUSG00000078998	Bpifa6	EG545477|Gm5840|Splunc6	BPI fold containing family A, member 6	protein-coding	0.000000	0.462687	
mm_161907.1	chr18	62324104	62324304	+	1	NA	NA	NA	0	NM_008313	15562	Mm.20440	NM_008313	ENSMUSG00000026322	Htr4	5-HT-4|5-HT4|5-HT<4L>|5HTR4	5 hydroxytryptamine (serotonin) receptor 4	protein-coding	0.080000	0.701493	
mm_124483.1	chr14	121698298	121698498	-	1	NA	NA	NA	19	NM_001347596	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.015000	0.597015	
mm_31555.1	chr4	56802492	56802692	+	1	NA	NA	NA	-261	NM_026079	230233	Mm.282743	NM_026079	ENSMUSG00000028431	Ikbkap	3110040G09Rik|6030413P05|C78473|Elp1|IKAP	inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein	protein-coding	0.095000	0.681592	
mm_53479.1	chr6	134939331	134939531	+	1	NA	NA	NA	10339	NR_037955	381822	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	0.005000	0.462687	
mm_59545.1	chr7	27898930	27899130	+	1	NA	NA	NA	30400	NM_028538	73430	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	0.005000	0.442786	84(GGCCCTAAGAGG,-,0.00)
mm_51097.1	chr6	67271112	67271312	+	1	NA	NA	NA	4233	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.020000	0.378109	
mm_151144.1	chr19	53128603	53128803	+	1	NA	NA	NA	-11740	NM_001164099	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.020000	0.507463	
mm_97429.1	chr11	78094573	78094773	+	1	NA	NA	NA	0	NM_145430	216971	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0.100000	0.691542	
mm_139451.1	chr17	55749923	55750123	+	1	NA	NA	NA	39	NM_139138	52614	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0.005000	0.412935	77(GCTTTTATATTA,+,0.00)
mm_139966.1	chr17	71673163	71673363	+	1	NA	NA	NA	2	NM_177087	320159	Mm.187372	NM_177087	ENSMUSG00000045761	Fam179a	4632412N22Rik	family with sequence similarity 179, member A	protein-coding	0.025000	0.577114	
mm_7673.1	chr1	128588794	128588994	-	1	NA	NA	NA	3405	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.020000	0.452736	
mm_119101.1	chr14	30898653	30898853	+	1	NA	NA	NA	12277	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.010000	0.502488	
mm_62406.1	chr7	101164098	101164298	+	1	NA	NA	NA	55423	NM_199012	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.010000	0.497512	
mm_34285.1	chr4	141444586	141444786	+	1	NA	NA	NA	13	NM_009541	22642	Mm.389590	NM_009541	ENSMUSG00000006215	Zbtb17	AA589413|Lp-1|Miz1|Zfp100|mZ13	zinc finger and BTB domain containing 17	protein-coding	0.130000	0.696517	
mm_122250.1	chr14	34015081	34015281	-	1	NA	NA	NA	-25897	NM_001034880	432838	Mm.318383	NM_001034880	ENSMUSG00000072624	Gm5460	EG432838	predicted gene 5460	protein-coding	0.000000	0.512438	
mm_2847.1	chr1	131661774	131661974	+	1	NA	NA	NA	23560	NM_007799	13034	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	0.010000	0.557214	
mm_130820.1	chr15	101818068	101818268	-	1	NA	NA	NA	1	NM_010668	16681	Mm.358616	NM_010668	ENSMUSG00000064201	Krt2	BB005427|Krt2-17|Krt2-2|Krt2e	keratin 2	protein-coding	0.025000	0.537313	-33(AGGTATATAAGG,-,0.00)
mm_135291.1	chr16	38527950	38528150	-	1	NA	NA	NA	-5387	NM_024273	76916	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	0.000000	0.318408	
mm_54415.1	chr6	32656883	32657083	-	1	NA	NA	NA	-68791	NM_175750	243743	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0.000000	0.422886	
mm_37246.1	chr4	118179895	118180095	-	1	NA	NA	NA	48	NM_172382	230674	Mm.234234	NM_172382	ENSMUSG00000033326	Kdm4a	D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677	lysine (K)-specific demethylase 4A	protein-coding	0.040000	0.552239	-7(GACTTTAAAGGA,-,0.00)
mm_69507.1	chr7	134364770	134364970	-	1	NA	NA	NA	14	NM_001199941	71007	Mm.334285	NM_001081331	ENSMUSG00000030994	D7Ertd443e	4933400E14Rik|FATS|Gm497	DNA segment, Chr 7, ERATO Doi 443, expressed	protein-coding	0.005000	0.452736	
mm_60868.1	chr7	45923445	45923645	+	1	NA	NA	NA	-2119	NM_010129	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.050000	0.577114	
mm_33372.1	chr4	129515245	129515445	+	1	NA	NA	NA	1764	NM_010807	17357	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0.015000	0.562189	
mm_49165.1	chr6	14512495	14512695	+	1	NA	NA	NA	242679	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	0.010000	0.497512	
mm_114276.1	chr13	58263855	58264055	+	1	NA	NA	NA	10233	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.030000	0.517413	
mm_48711.1	chr5	147305354	147305554	-	1	NA	NA	NA	1795	NM_007673	12591	Mm.20358	NM_007673	ENSMUSG00000029646	Cdx2	Cdx-2	caudal type homeobox 2	protein-coding	0.040000	0.557214	
mm_49972.1	chr6	40778608	40778808	+	1	NA	NA	NA	108786	NM_139296	194357	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0.010000	0.402985	
mm_23398.1	chr3	57833767	57833967	+	1	NA	NA	NA	13890	NM_019410	18645	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	0.030000	0.383085	48(CCTTTTAGAAGT,+,0.00)
mm_107497.1	chr12	38784289	38784489	+	1	NA	NA	NA	678	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.005000	0.388060	
mm_150275.1	chr19	34246091	34246291	+	1	NA	NA	NA	9182	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.030000	0.532338	
mm_23771.1	chr3	75557482	75557682	+	1	NA	NA	NA	49	NM_009250	20713	Mm.41560	NM_009250	ENSMUSG00000027834	Serpini1	AI837402|Ns|PI-12|PI12|Spi17	serine (or cysteine) peptidase inhibitor, clade I, member 1	protein-coding	0.040000	0.592040	
mm_112056.1	chr12	111875557	111875757	-	1	NA	NA	NA	32398	NM_011625	21981	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.005000	0.318408	
mm_98257.1	chr11	88727969	88728169	+	1	NA	NA	NA	9426	NR_038058	193280	Mm.396842	NR_038058		C030037D09Rik	9330160M04	RIKEN cDNA C030037D09 gene	ncRNA	0.025000	0.547264	
mm_79839.1	chr9	64806112	64806312	+	1	NA	NA	NA	-4799	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.005000	0.442786	
mm_106643.1	chr11	121039287	121039487	-	1	NA	NA	NA	91	NM_009854	12516	Mm.4100	NM_009854	ENSMUSG00000025163	Cd7	-	CD7 antigen	protein-coding	0.010000	0.537313	
mm_111726.1	chr12	103765722	103765922	-	1	NA	NA	NA	7811	NM_009246	20703	Mm.439695	NM_009246	ENSMUSG00000071177	Serpina1d	AI118301|Dom4|PI4|Spi1-4	serine (or cysteine) peptidase inhibitor, clade A, member 1D	protein-coding	0.020000	0.547264	
mm_2576.1	chr1	118481873	118482073	+	1	NA	NA	NA	-22708	NR_027901	68204	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.015000	0.522388	
mm_119200.1	chr14	32785914	32786114	+	1	NA	NA	NA	51	NM_001163616	69069	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0.005000	0.537313	
mm_22774.1	chr3	20275328	20275528	+	1	NA	NA	NA	305	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.020000	0.393035	
mm_144631.1	chr18	32939248	32939448	+	1	NA	NA	NA	307	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.150000	0.746269	
mm_3315.1	chr1	137906688	137906888	+	1	NA	NA	NA	-59667	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.010000	0.442786	
mm_61023.1	chr7	49507215	49507415	+	1	NA	NA	NA	129520	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.005000	0.497512	
mm_69419.1	chr7	132720554	132720754	-	1	NA	NA	NA	56262	NM_001347630	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.030000	0.606965	-92(GGGCTTATAAGC,-,0.00)
mm_39072.1	chr4	154160566	154160766	-	1	NA	NA	NA	18	NM_026388	67808	Mm.288737	NM_026388	ENSMUSG00000029030	Tprgl	1200015A19Rik|Svap30|Tprg1l|mover	transformation related protein 63 regulated like	protein-coding	0.155000	0.771144	
mm_19503.1	chr2	93520621	93520821	-	1	NA	NA	NA	-57771	NM_001136055	12521	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.020000	0.512438	
mm_10070.1	chr1	194620773	194620973	-	1	NA	NA	NA	1044	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	0.035000	0.582090	
mm_113834.1	chr13	47106322	47106522	+	1	NA	NA	NA	-201	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.140000	0.776119	
mm_101048.1	chr11	8624809	8625009	-	1	NA	NA	NA	39626	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.030000	0.527363	
mm_68970.1	chr7	126584708	126584908	-	1	NA	NA	NA	-200	NM_138310	171504	Mm.170665	NM_138310	ENSMUSG00000042759	Apobr	Apob-48r|Apob48r	apolipoprotein B receptor	protein-coding	0.010000	0.547264	36(GGCCAGAAAGGG,-,0.00)
mm_120803.1	chr14	74922010	74922210	+	1	NA	NA	NA	25767	NM_001252132	380916	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.045000	0.616915	
mm_133326.1	chr16	78301690	78301890	+	1	NA	NA	NA	119	NM_001276263	13052	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	0.095000	0.681592	
mm_8362.1	chr1	150456140	150456340	-	1	NA	NA	NA	9925	NM_021400	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.015000	0.487562	
mm_115667.1	chr13	12475421	12475621	-	1	NA	NA	NA	-13783	NM_001291057	56048	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.015000	0.497512	
mm_115150.1	chr13	105307973	105308173	+	1	NA	NA	NA	-15059	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.005000	0.398010	-23(TCCCATAAAAGC,-,0.00)
mm_8482.1	chr1	153549611	153549811	-	1	NA	NA	NA	3	NM_028749	74091	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0.095000	0.676617	
mm_107624.1	chr12	51593273	51593473	+	1	NA	NA	NA	32	NM_001198835	12810	Mm.21325	NM_007728	ENSMUSG00000020953	Coch	AW122937|Coch-5B2|D12H14S564E	cochlin	protein-coding	0.100000	0.726368	-32(GTCTTTATAGCG,+,0.00)
mm_58420.1	chr7	3292944	3293144	+	1	NA	NA	NA	16	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.055000	0.661692	
mm_137076.1	chr17	21008867	21009067	+	1	NA	NA	NA	26	NM_145483	224585	Mm.296036	NM_145483	ENSMUSG00000067942	Zfp160	6720480D16Rik|F11|HKr18|HZF5|KR18|mKIAA1611|mszf47	zinc finger protein 160	protein-coding	0.055000	0.547264	
mm_55892.1	chr6	83536317	83536517	-	1	NA	NA	NA	-166	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.010000	0.388060	-90(CAGCTTATAAGG,-,0.00),-88(GCTTATAAGGCC,+,0.00),-50(TGGCCTAAAAGG,-,0.00),82(CACCTTATATGG,-,0.00),84(CCTTATATGGTA,+,0.00)
mm_31300.1	chr4	45998894	45999094	+	1	NA	NA	NA	26697	NM_146142	100121	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.010000	0.388060	39(TCTTTTAGAGCC,+,0.00)
mm_129433.1	chr15	78494943	78495143	-	1	NA	NA	NA	23	NM_008368	16185	Mm.35287	NM_008368	ENSMUSG00000068227	Il2rb	CD122|IL-15Rbeta|IL15Rbeta|Il-2/15Rbeta|Il-2Rbeta|p70	interleukin 2 receptor, beta chain	protein-coding	0.020000	0.582090	
mm_149814.1	chr19	23893499	23893699	+	1	NA	NA	NA	134723	NM_177034	319924	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.115000	0.661692	
mm_162598.1	chr1	183147408	183147608	-	1	NA	NA	NA	49	NM_001278220	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0.010000	0.592040	
mm_130128.1	chr15	90224034	90224234	-	1	NA	NA	NA	-177	NM_001033441	380959	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	0.060000	0.597015	
mm_118932.1	chr14	27114771	27114971	+	1	NA	NA	NA	-29122	NM_001289686	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.115000	0.761194	
mm_80269.1	chr9	72958916	72959116	+	1	NA	NA	NA	231	NM_001163725	67685	Mm.31817	NM_026314	ENSMUSG00000089865	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0.060000	0.502488	
mm_66897.1	chr7	59930706	59930906	-	1	NA	NA	NA	43625	NR_015456	52480	Mm.482346	NR_015456	ENSMUSG00000100826	Snhg14	AU018661|D7Ertd715e|Lncat	small nucleolar RNA host gene 14	ncRNA	0.005000	0.323383	
mm_46178.1	chr5	97095714	97095914	-	1	NA	NA	NA	15782	NM_198422	231474	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.005000	0.368159	
mm_105494.1	chr11	106159364	106159564	-	1	NA	NA	NA	678	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.020000	0.621891	
mm_9750.1	chr1	180734336	180734536	-	1	NA	NA	NA	8393	NM_133225	170760	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.015000	0.462687	
mm_82441.1	chr9	15284551	15284751	-	1	NA	NA	NA	-4784	NM_144933	234959	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0.010000	0.487562	
mm_142502.1	chr17	46032047	46032247	-	1	NA	NA	NA	230	NM_001287058	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.025000	0.388060	
mm_63215.1	chr7	126272499	126272699	+	1	NA	NA	NA	-20	NM_145587	104175	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.175000	0.840796	
mm_60107.1	chr7	35448683	35448883	+	1	NA	NA	NA	-309	NM_001199015	30962	Mm.45874	NM_021291	ENSMUSG00000030492	Slc7a9	CSNU3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	protein-coding	0.020000	0.467662	
mm_31909.1	chr4	84884287	84884487	+	1	NA	NA	NA	78	NM_177385	338349	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0.125000	0.696517	
mm_36272.1	chr4	63729263	63729463	-	1	NA	NA	NA	15750	NM_177371	326623	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0.010000	0.407960	
mm_107416.1	chr12	34984653	34984853	+	1	NA	NA	NA	-8	NM_029294	75456	Mm.79179	NM_029294	ENSMUSG00000092305	Prps1l1	1700011K15Rik	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding	0.015000	0.467662	
mm_147769.1	chr18	61398906	61399106	-	1	NA	NA	NA	1425	NM_133249	170826	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0.075000	0.616915	
mm_6665.1	chr1	80289648	80289848	-	1	NA	NA	NA	50942	NM_001313728	26554	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.000000	0.353234	
mm_119232.1	chr14	33317216	33317416	+	1	NA	NA	NA	93708	NM_001310452	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.000000	0.412935	
mm_81379.1	chr9	108914529	108914729	+	1	NA	NA	NA	10	NM_027066	69384	Mm.158271	NM_027066	ENSMUSG00000025652	Tmem89	1700024B07Rik	transmembrane protein 89	protein-coding	0.020000	0.587065	
mm_173268.1	chrX	95956774	95956974	-	1	NA	NA	NA	100	NM_152822	76130	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	0.060000	0.606965	
mm_170860.1	chr2	180725220	180725420	+	1	NA	NA	NA	-19	NM_183161	228993	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	0.050000	0.636816	
mm_116047.1	chr13	27249402	27249602	-	1	NA	NA	NA	7072	NM_008865	18776	Mm.37203	NM_008865	ENSMUSG00000038891	Prl3b1	Csh2|Ghd8|PL|Pl-2|Pl2|mPL-II|mplII	prolactin family 3, subfamily b, member 1	protein-coding	0.025000	0.437811	
mm_23251.1	chr3	51224827	51225027	+	1	NA	NA	NA	480	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.160000	0.776119	
mm_105495.1	chr11	106159682	106159882	-	1	NA	NA	NA	360	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.060000	0.701493	
mm_104972.1	chr11	100207237	100207437	-	1	NA	NA	NA	173	NM_016958	16664	Mm.439898	NM_016958	ENSMUSG00000045545	Krt14	AI626930|CK-14|K14|Krt-1.14|Krt1-14	keratin 14	protein-coding	0.030000	0.611940	
mm_156041.1	chrX	108056127	108056327	+	1	NA	NA	NA	-107791	NM_001033252	213450	Mm.300779	NM_001033252	ENSMUSG00000073006	Gm732	-	predicted gene 732	protein-coding	0.020000	0.512438	-34(CCCCATAAAAGC,-,0.00)
mm_33845.1	chr4	135856006	135856206	+	1	NA	NA	NA	35	NM_010178	14105	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0.115000	0.711443	
mm_151507.1	chr19	58731978	58732178	+	1	NA	NA	NA	3191	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.020000	0.562189	
mm_116296.1	chr13	36117436	36117636	-	1	NA	NA	NA	-107	NM_024274	69955	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.105000	0.716418	
mm_77114.1	chr8	111081920	111082120	-	1	NA	NA	NA	-312	NM_181549	353287	Mm.135495	NM_181549	ENSMUSG00000033633	Clec18a	Mrcl	C-type lectin domain family 18, member A	protein-coding	0.005000	0.572139	
mm_101801.1	chr11	46265931	46266131	-	1	NA	NA	NA	30474	NM_177075	320116	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	0.030000	0.522388	
mm_69699.1	chr7	140048986	140049186	-	1	NA	NA	NA	2	NM_010836	17703	Mm.4816	NM_010836	ENSMUSG00000025469	Msx3	AI323377	msh homeobox 3	protein-coding	0.090000	0.646766	-33(CTTTTTATAGGG,+,0.00)
mm_23074.1	chr3	36453812	36454012	+	1	NA	NA	NA	21612	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.005000	0.383085	
mm_47974.1	chr5	135910537	135910737	-	1	NA	NA	NA	22718	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.025000	0.482587	
mm_35291.1	chr4	21848269	21848469	-	1	NA	NA	NA	79	NR_028384	67735	Mm.391650	NR_028384		4930528A17Rik	-	RIKEN cDNA 4930528A17 gene	ncRNA	0.085000	0.611940	
mm_92646.1	chr10	80387554	80387754	-	1	NA	NA	NA	-3	NM_198615	237400	Mm.268389	NM_198615	ENSMUSG00000048696	Mex3d	BC059858|Rkhd1	mex3 RNA binding family member D	protein-coding	0.190000	0.850746	
mm_25868.1	chr3	129901349	129901549	+	1	NA	NA	NA	34	NM_009811	12368	Mm.281379	NM_009811	ENSMUSG00000027997	Casp6	CASP-6|Mch2	caspase 6	protein-coding	0.085000	0.716418	
mm_8624.1	chr1	156270642	156270842	-	1	NA	NA	NA	32606	NM_001134741	214575	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	0.030000	0.452736	
mm_4360.1	chr1	171919337	171919537	+	1	NA	NA	NA	1900	NM_030710	30925	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	0.020000	0.542289	
mm_152646.1	chr19	12531855	12532055	-	1	NA	NA	NA	-29959	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.005000	0.442786	-79(CCCTTAAAACTG,+,0.00)
mm_2536.1	chr1	107399385	107399585	+	1	NA	NA	NA	-23204	NM_027548	116872	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	0.005000	0.487562	-33(GCTCATATAGAG,+,0.00),-31(TCATATAGAGCC,+,0.00)
mm_50891.1	chr6	56832030	56832230	+	1	NA	NA	NA	71	NM_012056	27055	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	0.150000	0.810945	
mm_156037.1	chrX	107667871	107668071	+	1	NA	NA	NA	7	NM_181319	245572	Mm.137011	NM_145224	ENSMUSG00000031241	Tbx22	D230020M15Rik	T-box 22	protein-coding	0.010000	0.497512	
mm_23356.1	chr3	55116085	55116285	+	1	NA	NA	NA	4019	NM_001144987	229285	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0.025000	0.527363	
mm_2835.1	chr1	131527765	131527965	+	1	NA	NA	NA	-38	NM_175382	108900	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	0.040000	0.537313	
mm_49749.1	chr6	34746182	34746382	+	1	NA	NA	NA	-34150	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.030000	0.577114	
mm_77812.1	chr9	3038090	3038290	+	1	NA	NA	NA	553	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.353234	
mm_26106.1	chr3	137341051	137341251	+	1	NA	NA	NA	73	NM_016885	59308	Mm.27343	NM_016885	ENSMUSG00000054690	Emcn	0610012K22Rik|AI315669|Muc14	endomucin	protein-coding	0.025000	0.522388	
mm_119362.1	chr14	41116561	41116761	+	1	NA	NA	NA	11628	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.015000	0.517413	
mm_72994.1	chr8	93158977	93159177	+	1	NA	NA	NA	-27794	NM_007954	13884	Mm.88078	NM_007954	ENSMUSG00000057400	Ces1c	Ces-N|Ee-1|Ee1|Es-4|Es-N|Es1|Es4|EsN|PESN	carboxylesterase 1C	protein-coding	0.000000	0.477612	
mm_74361.1	chr8	128358996	128359196	+	1	NA	NA	NA	23	NM_008737	18186	Mm.271745	NM_008737	ENSMUSG00000025810	Nrp1	C530029I03|NP-1|NPN-1|Npn1|Nrp	neuropilin 1	protein-coding	0.045000	0.577114	
mm_130339.1	chr15	97731237	97731437	-	1	NA	NA	NA	68	NM_001168693	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.030000	0.552239	-36(GTCTTTAAAAGG,-,0.00),-35(TCTTTAAAAGGA,+,0.00),83(CCTTTTATAGTG,+,0.00)
mm_50893.1	chr6	56832800	56833000	+	1	NA	NA	NA	841	NM_012056	27055	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	0.010000	0.353234	
mm_32406.1	chr4	106937223	106937423	+	1	NA	NA	NA	25853	NM_023672	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.010000	0.422886	
mm_58032.1	chr6	136662173	136662373	-	1	NA	NA	NA	-380	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.025000	0.552239	
mm_90868.1	chr10	8886138	8886338	-	1	NA	NA	NA	-168	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.050000	0.621891	
mm_49287.1	chr6	17666043	17666243	+	1	NA	NA	NA	-27851	NM_001289624	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.000000	0.293532	
mm_34694.1	chr4	152008978	152009178	+	1	NA	NA	NA	187	NM_001033352	242785	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	0.170000	0.741294	
mm_145039.1	chr18	39496639	39496839	+	1	NA	NA	NA	-9494	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.020000	0.447761	
mm_119538.1	chr14	47898759	47898959	+	1	NA	NA	NA	-5	NR_045959	73961	Mm.390702	NR_045959		4930447J18Rik	4930425M13Rik	RIKEN cDNA 4930447J18 gene	ncRNA	0.010000	0.502488	-94(CCTTTTATAGTG,+,0.00)
mm_139141.1	chr17	47510534	47510734	+	1	NA	NA	NA	5583	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.437811	
mm_130167.1	chr15	93231924	93232124	-	1	NA	NA	NA	43060	NM_001033275	223827	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.020000	0.532338	
mm_133282.1	chr16	77421630	77421830	+	1	NA	NA	NA	92402	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.030000	0.532338	
mm_54712.1	chr6	39725363	39725563	-	1	NA	NA	NA	0	NM_139294	109880	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	0.155000	0.776119	
mm_98084.1	chr11	86577430	86577630	+	1	NA	NA	NA	6628	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.015000	0.492537	79(CCTTTTATAAAT,+,0.00)
mm_50833.1	chr6	54816509	54816709	+	1	NA	NA	NA	-307	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.090000	0.696517	
mm_73491.1	chr8	107056833	107057033	+	1	NA	NA	NA	56	NR_028367	66164	Mm.334789	NM_025391	ENSMUSG00000031917	Nip7	1110017C15Rik|6330509M23Rik|AA408773|AA410017|PEachy	NIP7, nucleolar pre-rRNA processing protein	protein-coding	0.080000	0.606965	
mm_165994.1	chr4	111515508	111515708	+	1	NA	NA	NA	100602	NM_026279	67621	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0.010000	0.412935	51(TCTTTAATAGAA,+,0.00)
mm_99082.1	chr11	99391117	99391317	+	1	NA	NA	NA	-1853	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.030000	0.502488	
mm_94821.1	chr11	23256473	23256673	+	1	NA	NA	NA	532	NM_134014	103573	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.040000	0.487562	
mm_94583.1	chr11	11690741	11690941	+	1	NA	NA	NA	664	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.015000	0.407960	
mm_27973.1	chr3	80802539	80802739	-	1	NA	NA	NA	152	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.035000	0.572139	
mm_21547.1	chr2	164060857	164061057	-	1	NA	NA	NA	10145	NM_025996	67145	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	0.010000	0.532338	
mm_69013.1	chr7	126704649	126704849	-	1	NA	NA	NA	67	NM_009898	12721	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.060000	0.656716	
mm_43201.1	chr5	129096563	129096763	+	1	NA	NA	NA	-87	NM_001081342	243277	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding	0.020000	0.547264	
mm_26279.1	chr3	142505496	142505696	+	1	NA	NA	NA	8662	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.025000	0.492537	
mm_54576.1	chr6	38109461	38109661	-	1	NA	NA	NA	208	NM_029921	77522	Mm.387207	NM_029921	ENSMUSG00000029829	Tmem213	D630002J15Rik	transmembrane protein 213	protein-coding	0.020000	0.601990	
mm_21228.1	chr2	155945194	155945394	-	1	NA	NA	NA	73	NM_008109	14563	Mm.4744	NM_008109	ENSMUSG00000038259	Gdf5	BMP-14|Cdmp-1|bp|brp	growth differentiation factor 5	protein-coding	0.050000	0.547264	
mm_173278.1	chrY	12439607	12439807	+	1	NA	NA	NA	57718	NM_001199332	100041550	Mm.485768	NM_001199332	ENSMUSG00000095520	Gm20877	-	predicted gene, 20877	protein-coding	0.015000	0.462687	
mm_25619.1	chr3	118521937	118522137	+	1	NA	NA	NA	-40141	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.010000	0.373134	
mm_115199.1	chr13	109116088	109116288	+	1	NA	NA	NA	-208556	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.020000	0.601990	
mm_51123.1	chr6	68151755	68151955	+	1	NA	NA	NA	-586156	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.005000	0.452736	
mm_92882.1	chr10	82690522	82690722	-	1	NA	NA	NA	28	NM_029102	74782	Mm.191281	NM_029102	ENSMUSG00000020251	Glt8d2	1110021D20Rik	glycosyltransferase 8 domain containing 2	protein-coding	0.050000	0.601990	
mm_107362.1	chr12	32840843	32841043	+	1	NA	NA	NA	16827	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.020000	0.412935	
mm_54086.1	chr6	15836550	15836750	-	1	NA	NA	NA	115989	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.000000	0.348259	
mm_34171.1	chr4	140131758	140131958	+	1	NA	NA	NA	114953	NM_198610	230868	Mm.298731	NM_198610	ENSMUSG00000040972	Igsf21	BC055811|Gm141	immunoglobulin superfamily, member 21	protein-coding	0.010000	0.537313	
mm_100287.1	chr11	117813317	117813517	+	1	NA	NA	NA	3750	NM_009304	20973	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0.020000	0.592040	
mm_70320.1	chr8	4250213	4250413	+	1	NA	NA	NA	2099	NM_001195258	100044509	Mm.439193	NM_001195258	ENSMUSG00000089736	Tgfbr3l	Gm14378|OTTMUSG00000016477	transforming growth factor, beta receptor III-like	protein-coding	0.035000	0.597015	
mm_170245.1	chr17	93046348	93046548	+	1	NA	NA	NA	-152569	NM_001315503	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.000000	0.393035	
mm_87836.1	chr10	60380492	60380692	+	1	NA	NA	NA	-19134	NM_001164374	100302688	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.010000	0.492537	
mm_154622.1	chrX	7723180	7723380	+	1	NA	NA	NA	353	NM_001290794	54636	Mm.305725	NM_172372	ENSMUSG00000039382	Wdr45	C79260|DXImx38e|JM5|Sfc19|WIPI-4|Wdrx1	WD repeat domain 45	protein-coding	0.010000	0.388060	
mm_170017.1	chr17	18476721	18476921	-	1	NA	NA	NA	52717	NM_001102581	328759	Mm.469839	NM_001102581	ENSMUSG00000091631	Vmn2r95	-	vomeronasal 2, receptor 95	protein-coding	0.010000	0.457711	
mm_153451.1	chr19	41031088	41031288	-	1	NA	NA	NA	1913	NM_009345	21673	Mm.25620	NM_009345	ENSMUSG00000025014	Dntt	Tdt	deoxynucleotidyltransferase, terminal	protein-coding	0.040000	0.567164	
mm_65818.1	chr7	29155624	29155824	-	1	NA	NA	NA	486	NM_001146023	73833	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	0.115000	0.726368	
mm_77791.1	chr9	3027032	3027232	+	1	NA	NA	NA	11611	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.020000	0.338308	
mm_172028.1	chr6	123014033	123014233	-	1	NA	NA	NA	23766	NM_001005860	474145	Mm.263483	NM_001005860	ENSMUSG00000059639	Clec4a4	Dcir2	C-type lectin domain family 4, member a4	protein-coding	0.000000	0.492537	
mm_150089.1	chr19	29454128	29454328	+	1	NA	NA	NA	43309	NM_021396	58205	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.015000	0.487562	
mm_17573.1	chr2	30406309	30406509	-	1	NA	NA	NA	9339	NM_007760	12908	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.025000	0.542289	
mm_112031.1	chr12	111500743	111500943	-	1	NA	NA	NA	-15020	NM_001033248	212539	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0.020000	0.562189	
mm_130162.1	chr15	91573113	91573313	-	1	NA	NA	NA	48	NM_001033633	239606	Mm.360596	NM_001033633	ENSMUSG00000036298	Slc2a13	6530403A04|A630029G22Rik|AI505012|Gm308	solute carrier family 2 (facilitated glucose transporter), member 13	protein-coding	0.105000	0.736318	
mm_155137.1	chrX	50827472	50827672	+	1	NA	NA	NA	-13799	NM_133729	70415	Mm.46254	NM_133729	ENSMUSG00000031112	Stk26	2610018G03Rik|Mst4	serine/threonine kinase 26	protein-coding	0.005000	0.467662	
mm_104487.1	chr11	95808508	95808708	-	1	NA	NA	NA	-15892	NM_153104	237928	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.020000	0.601990	
mm_69378.1	chr7	131316116	131316316	-	1	NA	NA	NA	6076	NM_008411	16433	Mm.142717	NM_008411	ENSMUSG00000040205	Cuzd1	Erg-1|Itmap1|Uo-44|Usg|Utczp	CUB and zona pellucida-like domains 1	protein-coding	0.035000	0.487562	
mm_159357.1	chr3	84155624	84155824	-	1	NA	NA	NA	62	NM_029797	76915	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	0.090000	0.686567	
mm_144418.1	chr18	20962773	20962973	+	1	NA	NA	NA	18248	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.055000	0.502488	
mm_49806.1	chr6	36387963	36388163	+	1	NA	NA	NA	-21	NM_203491	243764	Mm.448632	NM_203491	ENSMUSG00000045613	Chrm2	AChR-M2|Chrm-2|M2	cholinergic receptor, muscarinic 2, cardiac	protein-coding	0.070000	0.567164	
mm_47339.1	chr5	122502118	122502318	-	1	NA	NA	NA	7	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.145000	0.751244	
mm_5117.1	chr1	7088615	7088815	-	1	NA	NA	NA	-205	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.090000	0.636816	
mm_123011.1	chr14	55091832	55092032	-	1	NA	NA	NA	116	NM_001039198	239102	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	0.035000	0.487562	
mm_153145.1	chr19	34249158	34249358	-	1	NA	NA	NA	6115	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.000000	0.472637	
mm_55955.1	chr6	85374488	85374688	-	1	NA	NA	NA	46	NM_177466	52055	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0.130000	0.796020	
mm_113531.1	chr13	37833731	37833931	+	1	NA	NA	NA	6438	NM_001039188	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.025000	0.522388	
mm_112682.1	chr13	16028934	16029134	+	1	NA	NA	NA	17183	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.000000	0.313433	-21(TACTTTAAAAAC,-,0.00)
mm_12061.1	chr2	59380787	59380987	+	1	NA	NA	NA	5795	NR_040510	76676	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.015000	0.457711	
mm_71363.1	chr8	45695287	45695487	+	1	NA	NA	NA	33394	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.010000	0.432836	
mm_171349.1	chr4	109117900	109118100	-	1	NA	NA	NA	36	NM_173350	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.095000	0.761194	
mm_120366.1	chr14	64574295	64574495	+	1	NA	NA	NA	-13720	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA	0.035000	0.601990	
mm_85756.1	chr9	108649216	108649416	-	1	NA	NA	NA	64	NM_011790	23807	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.145000	0.746269	
mm_2635.1	chr1	121486875	121487075	+	1	NA	NA	NA	41490	NM_010483	15564	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	0.015000	0.502488	
mm_130443.1	chr15	98482596	98482796	-	1	NA	NA	NA	-13	NM_010679	16770	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0.020000	0.467662	
mm_134948.1	chr16	31297414	31297614	-	1	NA	NA	NA	17294	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.020000	0.477612	
mm_9785.1	chr1	181212263	181212463	-	1	NA	NA	NA	-385	NM_145514	226757	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.075000	0.696517	
mm_79889.1	chr9	65294306	65294506	+	1	NA	NA	NA	146	NM_011802	270166	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0.110000	0.681592	
mm_35789.1	chr4	46503360	46503560	-	1	NA	NA	NA	14131	NM_053179	94181	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.010000	0.358209	
mm_153449.1	chr19	41031058	41031258	-	1	NA	NA	NA	1883	NM_009345	21673	Mm.25620	NM_009345	ENSMUSG00000025014	Dntt	Tdt	deoxynucleotidyltransferase, terminal	protein-coding	0.025000	0.562189	
mm_29020.1	chr3	101924337	101924537	-	1	NA	NA	NA	16	NM_001039371	242126	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	0.130000	0.726368	
mm_112431.1	chr13	4436013	4436213	+	1	NA	NA	NA	1770	NM_030611	83702	Mm.196666	NM_030611	ENSMUSG00000021210	Akr1c6	3alpha-HSD|Akr1c1|Hsd17b5	aldo-keto reductase family 1, member C6	protein-coding	0.000000	0.407960	
mm_29570.1	chr3	116968640	116968840	-	1	NA	NA	NA	212	NM_023245	114301	Mm.253736	NM_023245	ENSMUSG00000033377	Palmd	4631423C22Rik|PALML	palmdelphin	protein-coding	0.045000	0.572139	
mm_123977.1	chr14	75178319	75178519	-	1	NA	NA	NA	41994	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.025000	0.527363	
mm_172543.1	chr7	97647676	97647876	-	1	NA	NA	NA	-2664	NR_126461	75448	Mm.439818	NR_126461	ENSMUSG00000086433	Rsf1os1	1700006D18Rik	remodeling and spacing factor 1, opposite strand 1	ncRNA	0.020000	0.517413	
mm_107517.1	chr12	40445975	40446175	+	1	NA	NA	NA	22	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.135000	0.716418	
mm_53160.1	chr6	125321166	125321366	+	1	NA	NA	NA	-74	NM_011324	20276	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0.035000	0.606965	
mm_31512.1	chr4	53779600	53779800	+	1	NA	NA	NA	-5	NM_009317	21350	Mm.56955	NM_009317	ENSMUSG00000028417	Tal2	bHLHa19	T cell acute lymphocytic leukemia 2	protein-coding	0.065000	0.656716	-32(TCCTATAAAGGC,+,0.00),-32(TCCTATAAAGGC,-,0.00)
mm_41025.1	chr5	81794242	81794442	+	1	NA	NA	NA	330371	NR_138557	67327	Mm.87058	NR_138557		1700031L13Rik	-	RIKEN cDNA 1700031L13 gene	ncRNA	0.025000	0.457711	
mm_105485.1	chr11	105944398	105944598	-	1	NA	NA	NA	-351	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.065000	0.651741	
mm_170030.1	chr17	21920930	21921130	-	1	NA	NA	NA	-11104	NM_001256493	70081	Mm.245648	NM_001256493	ENSMUSG00000078546	Zfp995	2210404O09Rik	zinc finger protein 995	protein-coding	0.065000	0.577114	
mm_87879.1	chr10	61648580	61648780	+	1	NA	NA	NA	59	NM_026438	67895	Mm.28897	NM_026438	ENSMUSG00000020089	Ppa1	2010317E03Rik|Pyp	pyrophosphatase (inorganic) 1	protein-coding	0.135000	0.711443	-95(ACGCATTAAAGG,-,0.00)
mm_107190.1	chr12	25099605	25099805	+	1	NA	NA	NA	-3613	NM_010496	15902	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.040000	0.547264	71(CCTTTTAGGAAC,+,0.00)
mm_118416.1	chr14	7791415	7791615	+	1	NA	NA	NA	-26442	NM_001081427	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.075000	0.641791	
mm_106010.1	chr11	115813538	115813738	-	1	NA	NA	NA	-46	NM_080643	140721	Mm.383737	NM_080643	ENSMUSG00000034471	Caskin2	1600028L06Rik|mKIAA1139	CASK-interacting protein 2	protein-coding	0.070000	0.676617	
mm_112726.1	chr13	19192569	19192769	+	1	NA	NA	NA	203144	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.020000	0.447761	
mm_152436.1	chr19	10726195	10726395	-	1	NA	NA	NA	12679	NM_007650	12507	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	0.010000	0.522388	
mm_18541.1	chr2	64916836	64917036	-	1	NA	NA	NA	105830	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0.025000	0.512438	
mm_120584.1	chr14	69775075	69775275	+	1	NA	NA	NA	7703	NM_020275	21933	Mm.193430	NM_020275	ENSMUSG00000022074	Tnfrsf10b	DR5|KILLER|Ly98|MK|TRAILR2|TRICK2A|TRICK2B|TRICKB	tumor necrosis factor receptor superfamily, member 10b	protein-coding	0.020000	0.472637	
mm_44415.1	chr5	17888789	17888989	-	1	NA	NA	NA	70	NM_001159558	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.020000	0.477612	
mm_112078.1	chr12	112667968	112668168	-	1	NA	NA	NA	6208	NM_001165894	11651	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.030000	0.587065	-78(TCCCTTAAAAAC,-,0.00),-76(CCTTAAAAACAA,+,0.00)
mm_132271.1	chr16	32904742	32904942	+	1	NA	NA	NA	-9258	NM_001310673	70144	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	0.000000	0.308458	
mm_58895.1	chr7	17094990	17095190	+	1	NA	NA	NA	21050	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.015000	0.432836	
mm_96029.1	chr11	59549544	59549744	+	1	NA	NA	NA	6958	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.020000	0.472637	
mm_109799.1	chr12	3309273	3309473	-	1	NA	NA	NA	596	NM_016676	19325	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.080000	0.572139	
mm_110150.1	chr12	26450580	26450780	-	1	NA	NA	NA	5772	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.030000	0.457711	
mm_156009.1	chrX	106920571	106920771	+	1	NA	NA	NA	46	NM_175271	78134	Mm.90147	NM_175271	ENSMUSG00000049929	Lpar4	5730485F04Rik|Gpr23|LPA4|p2y9	lysophosphatidic acid receptor 4	protein-coding	0.025000	0.472637	
mm_70349.1	chr8	4861031	4861231	+	1	NA	NA	NA	-81597	NM_011369	20419	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	0.025000	0.417910	-24(GACTTTTAAAAA,-,0.00)
mm_130294.1	chr15	97013385	97013585	-	1	NA	NA	NA	42471	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.035000	0.467662	
mm_75832.1	chr8	70510468	70510668	-	1	NA	NA	NA	-201	NM_019883	22186	Mm.297372	NM_019883	ENSMUSG00000090137	Uba52	D8Ertd21e|Gm1863|Rps27a|Ubb|Ubc	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding	0.090000	0.611940	
mm_21793.1	chr2	164857543	164857743	-	1	NA	NA	NA	65	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.095000	0.706468	-32(ACTTATAAAGGC,+,0.00)
mm_58831.1	chr7	16782247	16782447	+	1	NA	NA	NA	1001	NM_009201	20514	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	0.100000	0.666667	
mm_54092.1	chr6	16836629	16836829	-	1	NA	NA	NA	61712	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.000000	0.398010	
mm_13236.1	chr2	98662234	98662434	+	1	NA	NA	NA	1194677	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.025000	0.353234	
mm_77946.1	chr9	7358351	7358551	+	1	NA	NA	NA	11077	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.323383	
mm_133444.1	chr16	87731423	87731623	+	1	NA	NA	NA	32569	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.020000	0.562189	
mm_18288.1	chr2	52615199	52615399	-	1	NA	NA	NA	-56688	NM_001285427	12298	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.000000	0.328358	
mm_4432.1	chr1	172506533	172506733	+	1	NA	NA	NA	6387	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.035000	0.562189	
mm_4609.1	chr1	178528760	178528960	+	1	NA	NA	NA	-265	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.140000	0.761194	
mm_157978.1	chrX	94122223	94122423	-	1	NA	NA	NA	1084	NM_011768	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	0.080000	0.671642	
mm_50003.1	chr6	41055814	41056014	+	1	NA	NA	NA	-20405	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.432836	
mm_8494.1	chr1	153850955	153851155	-	1	NA	NA	NA	140	NM_178243	240817	Mm.439405	NM_178243	ENSMUSG00000045968	Teddm2	5830403L16Rik|AJ554213|Me9|e92	transmembrane epididymal family member 2	protein-coding	0.020000	0.477612	
mm_171136.1	chr3	149052684	149052884	+	1	NA	NA	NA	-98149	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.000000	0.507463	
mm_57637.1	chr6	128362413	128362613	-	1	NA	NA	NA	309	NM_001326583	72440	Mm.143908	NM_197981	ENSMUSG00000048668	Rhno1	2510047L19Rik|5930416I19Rik	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding	0.100000	0.651741	
mm_16674.1	chr2	6825257	6825457	-	1	NA	NA	NA	46678	NM_001347094	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.010000	0.437811	
mm_120455.1	chr14	65969711	65969911	+	1	NA	NA	NA	1328	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.030000	0.507463	
mm_116384.1	chr13	41079545	41079745	-	1	NA	NA	NA	61	NM_001145803	17152	Mm.8149	NM_008547	ENSMUSG00000021363	Mak	A930010O05Rik	male germ cell-associated kinase	protein-coding	0.135000	0.706468	
mm_80476.1	chr9	78191915	78192115	+	1	NA	NA	NA	49	NM_010357	14860	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	0.055000	0.522388	
mm_127416.1	chr15	101260341	101260541	+	1	NA	NA	NA	-6405	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.015000	0.587065	
mm_160693.1	chr10	26375046	26375246	-	1	NA	NA	NA	73	NM_172787	237339	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	l(3)mbt-like 3 (Drosophila)	protein-coding	0.175000	0.800995	
mm_106973.1	chr12	8974743	8974943	+	1	NA	NA	NA	842	NM_172470	74682	Mm.87389	NM_172470	ENSMUSG00000066643	Wdr35	4930459M12Rik|4931430C06|mKIAA1336	WD repeat domain 35	protein-coding	0.020000	0.487562	
mm_124948.1	chr15	12350127	12350327	+	1	NA	NA	NA	28731	NM_025673	66629	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.005000	0.383085	
mm_85925.1	chr9	111690229	111690429	-	1	NA	NA	NA	19	NM_016853	20840	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	0.125000	0.791045	
mm_20404.1	chr2	129297128	129297328	-	1	NA	NA	NA	-16	NM_181589	70466	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	0.085000	0.587065	
mm_17616.1	chr2	30929998	30930198	-	1	NA	NA	NA	-22903	NM_133673	30934	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.015000	0.577114	
mm_102095.1	chr11	52306519	52306719	-	1	NA	NA	NA	-23605	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.020000	0.557214	
mm_94633.1	chr11	16846272	16846472	+	1	NA	NA	NA	94169	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.000000	0.328358	
mm_83559.1	chr9	46242852	46243052	-	1	NA	NA	NA	2108	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.035000	0.587065	
mm_152323.1	chr19	9938685	9938885	-	1	NA	NA	NA	-39252	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.035000	0.517413	
mm_65411.1	chr7	25245026	25245226	-	1	NA	NA	NA	5632	NM_010155	13875	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.020000	0.646766	
mm_40415.1	chr5	53267015	53267215	+	1	NA	NA	NA	9	NM_001145433	66278	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.100000	0.681592	
mm_19793.1	chr2	109278190	109278390	-	1	NA	NA	NA	0	NM_029790	76894	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.060000	0.527363	
mm_24338.1	chr3	89730661	89730861	+	1	NA	NA	NA	43	NM_019655	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.045000	0.631841	-25(CCTTTTCAAGGA,+,0.00)
mm_156305.1	chrX	136837895	136838095	+	1	NA	NA	NA	15249	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.000000	0.368159	0(CAATATATAAGG,-,0.00)
mm_50499.1	chr6	49035895	49036095	+	1	NA	NA	NA	-523	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.015000	0.447761	
mm_95858.1	chr11	58008798	58008998	+	1	NA	NA	NA	-166	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.205000	0.845771	
mm_89769.1	chr10	100098973	100099173	+	1	NA	NA	NA	83252	NM_013598	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.015000	0.402985	
mm_118066.1	chr13	102905808	102906008	-	1	NA	NA	NA	145653	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.025000	0.432836	
mm_124968.1	chr15	18818613	18818813	+	1	NA	NA	NA	-234	NM_001316758	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0.050000	0.611940	
mm_52919.1	chr6	122850545	122850745	+	1	NA	NA	NA	5512	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.005000	0.427861	
mm_4714.1	chr1	180945812	180946012	+	1	NA	NA	NA	3394	NM_144794	208795	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.020000	0.582090	
mm_86602.1	chr10	13500986	13501186	+	1	NA	NA	NA	58	NM_025799	66848	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0.050000	0.626866	
mm_163589.1	chr13	38464541	38464741	+	1	NA	NA	NA	-2848	NR_131033	75854	Mm.417810	NR_131033		4930579J19Rik	-	RIKEN cDNA 4930579J19 gene	ncRNA	0.030000	0.482587	
mm_29777.1	chr3	127408784	127408984	-	1	NA	NA	NA	174	NM_001327939	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.045000	0.592040	
mm_137074.1	chr17	20965454	20965654	+	1	NA	NA	NA	20100	NM_016891	51792	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	0.015000	0.587065	
mm_143997.1	chr17	88029389	88029589	-	1	NA	NA	NA	35796	NM_001081034	225055	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.025000	0.412935	
mm_166636.1	chr6	82780850	82781050	-	1	NA	NA	NA	-6496	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.010000	0.482587	
mm_116065.1	chr13	27582070	27582270	-	1	NA	NA	NA	1	NM_028477	73244	Mm.215193	NM_028477	ENSMUSG00000019756	Prl8a1	1600017L04Rik|3830403L08Rik|Ghd16|PLP-Cd|Plpcd|Prlpc4	prolactin family 8, subfamily a, member 1	protein-coding	0.000000	0.427861	
mm_153406.1	chr19	40513757	40513957	-	1	NA	NA	NA	-45	NM_009166	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.110000	0.736318	
mm_156503.1	chrX	146414124	146414324	+	1	NA	NA	NA	-548289	NM_008312	15560	Mm.439670	NM_008312	ENSMUSG00000041380	Htr2c	5-HT2C|5-HT2cR|5-HTR2C|5HT1c|Htr1c|SR1	5-hydroxytryptamine (serotonin) receptor 2C	protein-coding	0.005000	0.338308	
mm_170505.1	chr19	24620070	24620270	+	1	NA	NA	NA	-53838	NM_183160	226040	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	0.000000	0.502488	-30(GCTTTAATACCC,+,0.00)
mm_123781.1	chr14	70331344	70331544	-	1	NA	NA	NA	16989	NM_001135152	213053	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0.010000	0.507463	
mm_133348.1	chr16	81623660	81623860	+	1	NA	NA	NA	423063	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.010000	0.323383	
mm_98517.1	chr11	94952525	94952725	+	1	NA	NA	NA	-14968	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.000000	0.288557	
mm_129406.1	chr15	78291569	78291769	-	1	NA	NA	NA	-6820	NR_106137	102465776		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0.025000	0.562189	
mm_98773.1	chr11	96746990	96747190	+	1	NA	NA	NA	30465	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.025000	0.492537	
mm_74529.1	chr8	9559214	9559414	-	1	NA	NA	NA	211709	NM_173446	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding	0.000000	0.477612	
mm_59766.1	chr7	28833909	28834109	+	1	NA	NA	NA	-161	NM_010707	16857	Mm.210336	NM_010707		Lgals6	galectin-6	lectin, galactose binding, soluble 6	protein-coding	0.000000	0.542289	-16(GGCCCTAAGAGG,-,0.00)
mm_49605.1	chr6	30744261	30744461	+	1	NA	NA	NA	3062	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.025000	0.457711	
mm_153228.1	chr19	34879158	34879358	-	1	NA	NA	NA	197	NM_001114339	75735	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	0.065000	0.567164	0(CCCTTTAGGCTC,+,0.00)
mm_131567.1	chr16	18213888	18214088	+	1	NA	NA	NA	-125	NR_015575	66779	Mm.387525	NR_015575		4933432I09Rik	-	RIKEN cDNA 4933432I09 gene	ncRNA	0.020000	0.587065	
mm_151989.1	chr19	5848018	5848218	-	1	NA	NA	NA	-2638	NR_003513	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.020000	0.572139	
mm_122626.1	chr14	51145590	51145790	-	1	NA	NA	NA	1077	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.020000	0.527363	
mm_29759.1	chr3	127162244	127162444	-	1	NA	NA	NA	1039	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.085000	0.636816	
mm_12989.1	chr2	90885388	90885588	+	1	NA	NA	NA	-298	NM_026161	67445	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0.010000	0.527363	
mm_93552.1	chr10	116114172	116114372	-	1	NA	NA	NA	-355	NM_001161855	619332	Mm.391427	NM_001033821	ENSMUSG00000074734	4933416C03Rik	-	RIKEN cDNA 4933416C03 gene	protein-coding	0.070000	0.606965	
mm_102788.1	chr11	68431922	68432122	-	1	NA	NA	NA	-103	NM_177320	320207	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik	phosphoinositide-3-kinase, regulatory subunit 5, p101	protein-coding	0.055000	0.636816	
mm_75065.1	chr8	33801587	33801787	-	1	NA	NA	NA	-53917	NM_001206849	72632	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	0.020000	0.482587	
mm_53958.1	chr6	5491581	5491781	-	1	NA	NA	NA	4597	NM_013743	27273	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.030000	0.467662	
mm_112688.1	chr13	16030954	16031154	+	1	NA	NA	NA	19203	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.328358	
mm_24590.1	chr3	93444966	93445166	+	1	NA	NA	NA	2736	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.035000	0.577114	
mm_35565.1	chr4	41640106	41640306	-	1	NA	NA	NA	96	NM_027147	69638	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.155000	0.776119	
mm_50484.1	chr6	48988418	48988618	+	1	NA	NA	NA	1657	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.010000	0.527363	
mm_61720.1	chr7	81835500	81835700	+	1	NA	NA	NA	-6169	NM_146193	83962	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	0.015000	0.412935	
mm_112608.1	chr13	14522415	14522615	+	1	NA	NA	NA	711	NM_001081348	94253	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.045000	0.601990	-92(TTGTCTAAAAGC,-,0.00)
mm_61538.1	chr7	79273186	79273386	+	1	NA	NA	NA	20	NM_018811	54608	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.095000	0.681592	
mm_75106.1	chr8	34146661	34146861	-	1	NA	NA	NA	-22	NM_026609	68192	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	0.170000	0.810945	
mm_101154.1	chr11	16951007	16951207	-	1	NA	NA	NA	175	NR_110421	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.050000	0.587065	-91(GGACTTAAAAGA,-,0.00)
mm_107598.1	chr12	49382584	49382784	+	1	NA	NA	NA	-199	NM_001160112	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.040000	0.542289	81(TCTTTTTAAAGG,-,0.00),82(CTTTTTAAAGGC,+,0.00),83(TTTTTAAAGGCC,+,0.00)
mm_114092.1	chr13	54687216	54687416	+	1	NA	NA	NA	492	NM_001146025	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.080000	0.686567	
mm_154240.1	chr19	60581075	60581275	-	1	NA	NA	NA	-152	NM_001172096	78832	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	0.065000	0.611940	
mm_85034.1	chr9	88482460	88482660	-	1	NA	NA	NA	-163	NM_001284328	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.130000	0.726368	
mm_27916.1	chr3	79531671	79531871	-	1	NA	NA	NA	35908	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.015000	0.522388	
mm_25038.1	chr3	98281384	98281584	+	1	NA	NA	NA	1053	NM_008256	15360	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.010000	0.537313	71(GCTTTTAGCGCC,+,0.00)
mm_146374.1	chr18	82584724	82584924	+	1	NA	NA	NA	30316	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.030000	0.587065	74(GCTTTTAAGAAC,+,0.00)
mm_23570.1	chr3	63296068	63296268	+	1	NA	NA	NA	73	NM_001289463	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.045000	0.621891	
mm_19145.1	chr2	80524578	80524778	-	1	NA	NA	NA	56504	NM_001290745	50884	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0.030000	0.472637	
mm_26437.1	chr3	142620645	142620845	+	1	NA	NA	NA	82	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.005000	0.487562	
mm_112117.1	chr12	112828966	112829166	-	1	NA	NA	NA	323	NM_028023	71963	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	0.105000	0.666667	
mm_31204.1	chr4	43727195	43727395	+	1	NA	NA	NA	97	NM_027511	100039781	Mm.18796	NM_027511	ENSMUSG00000071001	Hrct1	3830408D24Rik	histidine rich carboxyl terminus 1	protein-coding	0.010000	0.567164	
mm_165018.1	chr19	29812887	29813087	-	1	NA	NA	NA	-13	NM_177721	240614	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	0.115000	0.701493	
mm_106178.1	chr11	116694458	116694658	-	1	NA	NA	NA	102	NM_009180	20446	Mm.3947	NM_009180	ENSMUSG00000057286	St6galnac2	II|ST6GalNAc|Siat7|Siat7b	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding	0.095000	0.721393	
mm_163537.1	chr13	13529189	13529389	+	1	NA	NA	NA	-61120	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.015000	0.477612	
mm_95177.1	chr11	41498610	41498810	+	1	NA	NA	NA	502004	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding	0.050000	0.507463	
mm_93354.1	chr10	102836268	102836468	-	1	NA	NA	NA	192409	NM_172553	216285	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding	0.010000	0.273632	
mm_17371.1	chr2	26916244	26916444	-	1	NA	NA	NA	-77	NM_013678	20931	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	0.100000	0.631841	
mm_107652.1	chr12	52699138	52699338	+	1	NA	NA	NA	-145	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.000000	0.432836	-88(CCTTTTAAACTT,+,0.00)
mm_636.1	chr1	40381187	40381387	+	1	NA	NA	NA	-48283	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.025000	0.547264	
mm_93440.1	chr10	109833108	109833308	-	1	NA	NA	NA	167011	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.035000	0.527363	
mm_109280.1	chr12	109547744	109547944	+	1	NA	NA	NA	2446	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.010000	0.567164	
mm_106575.1	chr11	120713637	120713837	-	1	NA	NA	NA	30	NM_016665	20892	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0.065000	0.611940	
mm_46778.1	chr5	112419877	112420077	-	1	NA	NA	NA	-27764	NM_028386	72898	Mm.151745	NM_028386	ENSMUSG00000029348	Asphd2	2900006N09Rik|9230106G13Rik	aspartate beta-hydroxylase domain containing 2	protein-coding	0.020000	0.383085	
mm_19470.1	chr2	92459496	92459696	-	1	NA	NA	NA	198	NM_211358	228368	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.095000	0.656716	
mm_74011.1	chr8	121127738	121127938	+	1	NA	NA	NA	153	NM_008024	14241	Mm.5111	NM_008024	ENSMUSG00000097084	Foxl1	FREAC7|Fkh6|fkh-6	forkhead box L1	protein-coding	0.045000	0.507463	-27(ATTTTTAAAGCC,+,0.00)
mm_96287.1	chr11	63128882	63129082	+	1	NA	NA	NA	0	NM_001302258	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.010000	0.547264	
mm_68337.1	chr7	106505094	106505294	-	1	NA	NA	NA	-64121	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.010000	0.328358	
mm_133489.1	chr16	90220659	90220859	+	1	NA	NA	NA	17	NM_011434	20655	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.120000	0.671642	-37(GCCTATAAAAGC,-,0.00)
mm_79477.1	chr9	56950869	56951069	+	1	NA	NA	NA	45	NM_178374	66069	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	0.075000	0.621891	
mm_60962.1	chr7	47699937	47700137	+	1	NA	NA	NA	-98665	NM_153067	233222	Mm.240142	NM_153067	ENSMUSG00000078698	Mrgpra3	Mrga3	MAS-related GPR, member A3	protein-coding	0.020000	0.422886	63(TTGCATATAAGC,-,0.00)
mm_118787.1	chr14	24108720	24108920	+	1	NA	NA	NA	19943	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.005000	0.338308	
mm_164439.1	chr16	49775138	49775338	+	1	NA	NA	NA	75944	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.025000	0.487562	
mm_46326.1	chr5	100820254	100820454	-	1	NA	NA	NA	581	NM_172405	70681	Mm.486560	NM_172405	ENSMUSG00000035234	Fam175a	3830405G04Rik|5630400M01Rik|AI506069|AL024423|AV118690|Ccdc98	family with sequence similarity 175, member A	protein-coding	0.015000	0.323383	-79(GCATTTTTAAGC,-,0.00)
mm_23961.1	chr3	84952180	84952380	+	1	NA	NA	NA	69	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.015000	0.487562	
mm_154389.1	chrM	12595	12795	+	1	NA	NA	NA	NA	NA									0.015000	0.412935	61(CTCTTTATATGC,-,0.00),63(CTTTATATGCTC,+,0.00)
mm_53644.1	chr6	140623746	140623946	+	1	NA	NA	NA	344	NM_001005605	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.155000	0.800995	
mm_108241.1	chr12	78196956	78197156	+	1	NA	NA	NA	-29599	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.000000	0.383085	
mm_82683.1	chr9	22186160	22186360	-	1	NA	NA	NA	-1906	NM_001033813	619310	Mm.335016	NM_001033813	ENSMUSG00000074472	Zfp872	9530015I07Rik	zinc finger protein 872	protein-coding	0.020000	0.427861	
mm_86631.1	chr10	13993722	13993922	+	1	NA	NA	NA	27443	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.010000	0.462687	-31(GCTTAAATGCTC,+,0.00)
mm_40106.1	chr5	34761553	34761753	+	1	NA	NA	NA	-87	NM_010414	15194	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	0.110000	0.671642	
mm_64556.1	chr7	144741979	144742179	+	1	NA	NA	NA	-3487	NM_001242349	101772	Mm.26700	NM_178642	ENSMUSG00000031075	Ano1	Tmem16a	anoctamin 1, calcium activated chloride channel	protein-coding	0.015000	0.547264	
mm_30459.1	chr3	153944388	153944588	-	1	NA	NA	NA	155	NM_007382	11364	Mm.10530	NM_007382	ENSMUSG00000062908	Acadm	AU018656|MCAD	acyl-Coenzyme A dehydrogenase, medium chain	protein-coding	0.085000	0.691542	
mm_132965.1	chr16	50732746	50732946	+	1	NA	NA	NA	-73	NR_028300	68190	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0.065000	0.601990	
mm_28902.1	chr3	98335554	98335754	-	1	NA	NA	NA	4315	NM_016966	236539	Mm.16898	NM_016966	ENSMUSG00000053398	Phgdh	3-PGDH|3PGDH|4930479N23|A10|PGAD|PGD|PGDH|SERA	3-phosphoglycerate dehydrogenase	protein-coding	0.000000	0.427861	
mm_126615.1	chr15	83100192	83100392	+	1	NA	NA	NA	87	NM_023475	68607	Mm.30056	NM_023475	ENSMUSG00000058586	Serhl	0610008B10Rik|1110019M09Rik|AU019786	serine hydrolase-like	protein-coding	0.045000	0.616915	
mm_67270.1	chr7	75780665	75780865	-	1	NA	NA	NA	-67573	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.020000	0.611940	
mm_20630.1	chr2	131994096	131994296	-	1	NA	NA	NA	35792	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.020000	0.467662	
mm_15469.1	chr2	157470923	157471123	+	1	NA	NA	NA	46730	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.025000	0.592040	
mm_75454.1	chr8	47713802	47714002	-	1	NA	NA	NA	29	NM_172407	70925	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.145000	0.726368	-61(GGTTATAAAAGG,-,0.00)
mm_24331.1	chr3	89459243	89459443	+	1	NA	NA	NA	225	NM_026784	68603	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0.050000	0.582090	
mm_96882.1	chr11	70432455	70432655	+	1	NA	NA	NA	-25	NM_001271360	216869	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872	arrestin, beta 2	protein-coding	0.145000	0.771144	
mm_6694.1	chr1	80726255	80726455	-	1	NA	NA	NA	32198	NM_175291	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.000000	0.303483	
mm_18890.1	chr2	76709737	76709937	-	1	NA	NA	NA	34522	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.522388	
mm_163161.1	chr11	84160822	84161022	+	1	NA	NA	NA	6554	NM_001037932	628813	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690|OTTMUSG00000000997	predicted gene 11437	protein-coding	0.005000	0.477612	-25(CCTCAAATAGTC,+,0.00)
mm_39947.1	chr5	31912193	31912393	+	1	NA	NA	NA	214243	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.010000	0.412935	
mm_30970.1	chr4	34485675	34485875	+	1	NA	NA	NA	-64840	NM_001007589	433693	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.065000	0.542289	
mm_86515.1	chr10	7681091	7681291	+	1	NA	NA	NA	-18	NM_010690	16798	Mm.34083	NM_010690	ENSMUSG00000040021	Lats1	AW208599	large tumor suppressor	protein-coding	0.140000	0.751244	
mm_70136.1	chr7	143250369	143250569	-	1	NA	NA	NA	46078	NR_001461	63830	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.005000	0.393035	
mm_132309.1	chr16	33684446	33684646	+	1	NA	NA	NA	80	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629|OTTMUSG00000027315	heart development protein with EGF-like domains 1	protein-coding	0.165000	0.805970	
mm_12213.1	chr2	67445879	67446079	+	1	NA	NA	NA	-23	NM_001083919	241431	Mm.261043	NM_001024618	ENSMUSG00000027022	Xirp2	2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2	xin actin-binding repeat containing 2	protein-coding	0.005000	0.497512	
mm_149363.1	chr19	11292330	11292530	+	1	NA	NA	NA	-8617	NM_183190	269063	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	0.010000	0.547264	
mm_79573.1	chr9	58134257	58134457	+	1	NA	NA	NA	282	NM_001162476	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.015000	0.567164	
mm_56756.1	chr6	116073056	116073256	-	1	NA	NA	NA	-78151	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.005000	0.477612	
mm_165758.1	chr3	114030377	114030577	+	1	NA	NA	NA	-63	NM_007729	12814	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding	0.040000	0.651741	
mm_113345.1	chr13	31806539	31806739	+	1	NA	NA	NA	-7	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.090000	0.626866	
mm_172285.1	chr6	93376645	93376845	+	1	NA	NA	NA	436163	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.065000	0.656716	
mm_82260.1	chr9	5311397	5311597	-	1	NA	NA	NA	2648	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.005000	0.497512	
mm_72990.1	chr8	93011479	93011679	+	1	NA	NA	NA	36613	NM_001013764	244595	Mm.390089	NM_001013764	ENSMUSG00000071047	Ces1a	Ces1l|EG244595|Gm4976	carboxylesterase 1A	protein-coding	0.025000	0.492537	
mm_14362.1	chr2	129616344	129616544	+	1	NA	NA	NA	23275	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.055000	0.517413	
mm_96238.1	chr11	62551639	62551839	+	1	NA	NA	NA	8	NM_001313984	22187	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.110000	0.661692	
mm_118420.1	chr14	7817960	7818160	+	1	NA	NA	NA	103	NM_134080	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.075000	0.631841	
mm_63063.1	chr7	122079671	122079871	+	1	NA	NA	NA	12573	NM_138589	28018	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	0.005000	0.467662	
mm_60747.1	chr7	45459575	45459775	+	1	NA	NA	NA	211	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.070000	0.592040	56(GACTTGTAAAGG,-,0.00)
mm_137890.1	chr17	31680911	31681111	+	1	NA	NA	NA	3080	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.030000	0.597015	
mm_152835.1	chr19	23273774	23273974	-	1	NA	NA	NA	23	NM_153808	226026	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	0.140000	0.761194	
mm_1809.1	chr1	81077392	81077592	+	1	NA	NA	NA	175	NM_172849	241134	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	0.030000	0.467662	
mm_145545.1	chr18	60808159	60808359	+	1	NA	NA	NA	-3817	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.015000	0.552239	
mm_85140.1	chr9	95795881	95796081	-	1	NA	NA	NA	-45623	NM_011643	22063	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0.010000	0.452736	
mm_128246.1	chr15	36609037	36609237	-	1	NA	NA	NA	-164	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.125000	0.761194	
mm_4187.1	chr1	171160548	171160748	+	1	NA	NA	NA	5130	NM_001315500	17528	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0.020000	0.557214	
mm_143049.1	chr17	56905702	56905902	-	1	NA	NA	NA	29586	NM_022328	64144	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0.025000	0.567164	
mm_31992.1	chr4	89687962	89688162	+	1	NA	NA	NA	-136	NM_175647	242523	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	0.035000	0.661692	83(GCTCTTAGACCC,+,0.00)
mm_100869.1	chr11	5898680	5898880	-	1	NA	NA	NA	2	NM_022879	17898	Mm.46514	NM_022879	ENSMUSG00000020469	Myl7	MLC-2alpha|MLC2a|MYL2A|Mylc2a|RLC-A	myosin, light polypeptide 7, regulatory	protein-coding	0.010000	0.562189	
mm_38498.1	chr4	141060452	141060652	-	1	NA	NA	NA	-7	NM_001145958	230872	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	0.135000	0.721393	
mm_16430.1	chr2	180391936	180392136	+	1	NA	NA	NA	2988	NR_029528	387136		NR_029528	ENSMUSG00000070144	Mir1a-1	Mir1-1|Mirn1-1|Mirn1b|Mirn1c|Mirn1d|mir-1a-1|mmu-mir-1-1|mmu-mir-1a-1	microRNA 1a-1	ncRNA	0.015000	0.388060	11(GCCTCTTTAAAG,-,0.00),13(CTCTTTAAAGAG,+,0.00),13(CTCTTTAAAGAG,-,0.00),15(CTTTAAAGAGGG,+,0.00)
mm_64979.1	chr7	16909958	16910158	-	1	NA	NA	NA	3568	NM_008967	19222	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0.035000	0.592040	
mm_103470.1	chr11	76479084	76479284	-	1	NA	NA	NA	-10719	NM_001291186	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.025000	0.532338	
mm_162355.1	chr1	58393270	58393470	-	1	NA	NA	NA	234	NM_025824	66882	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.155000	0.805970	
mm_53015.1	chr6	123283305	123283505	+	1	NA	NA	NA	6466	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.363184	-87(CAGTCTAAAAAG,-,0.00)
mm_22574.1	chr3	10350877	10351077	+	1	NA	NA	NA	340	NM_001331015	66361	Mm.371617	NM_025512	ENSMUSG00000039795	Zfand1	2310008M20Rik|AW048890	zinc finger, AN1-type domain 1	protein-coding	0.040000	0.512438	
mm_7937.1	chr1	133914607	133914807	-	1	NA	NA	NA	6694	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.035000	0.557214	
mm_10401.1	chr2	13575445	13575645	+	1	NA	NA	NA	1234	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.025000	0.552239	
mm_170927.1	chr2	40127804	40128004	-	1	NA	NA	NA	-901566	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding	0.040000	0.517413	
mm_57544.1	chr6	126645692	126645892	-	1	NA	NA	NA	9	NM_010595	16485	Mm.40424	NM_010595	ENSMUSG00000047976	Kcna1	AI840627|Kca1-1|Kv1.1|MBK1|Mk-1|Shak|mceph	potassium voltage-gated channel, shaker-related subfamily, member 1	protein-coding	0.080000	0.676617	
mm_40485.1	chr5	55624842	55625042	+	1	NA	NA	NA	1274950	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA	0.015000	0.383085	
mm_81793.1	chr9	115088741	115088941	+	1	NA	NA	NA	21562	NM_148958	74486	Mm.458474	NM_148958	ENSMUSG00000040875	Osbpl10	4933433D06Rik|C820004B04Rik|OPR-10|ORP-10	oxysterol binding protein-like 10	protein-coding	0.045000	0.557214	
mm_120076.1	chr14	57524669	57524869	+	1	NA	NA	NA	-60	NM_145837	239114	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	0.085000	0.681592	
mm_16632.1	chr2	5714375	5714575	-	1	NA	NA	NA	287	NM_001290374	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.070000	0.661692	
mm_53919.1	chr6	4086711	4086911	-	1	NA	NA	NA	116	NM_009748	12068	Mm.286457	NM_009748	ENSMUSG00000032757	Bet1	AW555236|Bet-1	Bet1 golgi vesicular membrane trafficking protein	protein-coding	0.035000	0.601990	
mm_165503.1	chr2	167775059	167775259	-	1	NA	NA	NA	83982	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.015000	0.597015	-31(CCTCTTAAGGTG,+,0.00)
mm_100231.1	chr11	117199616	117199816	+	1	NA	NA	NA	55	NM_001113486	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.120000	0.751244	
mm_99327.1	chr11	101459907	101460107	+	1	NA	NA	NA	6192	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.015000	0.641791	
mm_96322.1	chr11	64079403	64079603	+	1	NA	NA	NA	19	NR_033780	66456	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA	0.060000	0.601990	28(GAGCTTATAAAG,-,0.00),30(GCTTATAAAGAT,+,0.00)
mm_79481.1	chr9	56994804	56995004	+	1	NA	NA	NA	-64	NM_019651	56294	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	0.095000	0.706468	
mm_39500.1	chr5	21186249	21186449	+	1	NA	NA	NA	82	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.075000	0.651741	
mm_105622.1	chr11	106789044	106789244	-	1	NA	NA	NA	-108	NM_177088	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.085000	0.641791	
mm_107543.1	chr12	40651900	40652100	+	1	NA	NA	NA	205947	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.000000	0.432836	-78(ACTTTTAGGGCC,+,0.00)
mm_132650.1	chr16	41532934	41533134	+	1	NA	NA	NA	208	NM_001347236	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.010000	0.537313	
mm_44992.1	chr5	38158890	38159090	-	1	NA	NA	NA	477	NM_010942	18196	Mm.7414	NM_010942	ENSMUSG00000029126	Nsg1	Neep21|m234|p21	neuron specific gene family member 1	protein-coding	0.080000	0.646766	
mm_127056.1	chr15	97044080	97044280	+	1	NA	NA	NA	11776	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.030000	0.447761	
mm_145388.1	chr18	57133355	57133555	+	1	NA	NA	NA	365	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.060000	0.671642	
mm_106037.1	chr11	116078345	116078545	-	1	NA	NA	NA	-484	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.050000	0.691542	
mm_97648.1	chr11	79411981	79412181	+	1	NA	NA	NA	71950	NR_045305	104522	Mm.436987	NR_045305	ENSMUSG00000091523	AU040972	AU040954	expressed sequence AU040972	ncRNA	0.005000	0.373134	-67(GACTATTTAAAG,-,0.00),-65(CTATTTAAAGGC,+,0.00)
mm_132185.1	chr16	32430513	32430713	+	1	NA	NA	NA	-308	NM_009981	13026	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	0.090000	0.641791	
mm_54785.1	chr6	41544746	41544946	-	1	NA	NA	NA	23070	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.417910	
mm_159763.1	chr5	93148303	93148503	+	1	NA	NA	NA	54987	NM_001347377	52398	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.030000	0.442786	
mm_99748.1	chr11	106674881	106675081	+	1	NA	NA	NA	40300	NM_001305158	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.035000	0.537313	
mm_98726.1	chr11	96351772	96351972	+	1	NA	NA	NA	240	NM_134032	103889	Mm.281153	NM_134032	ENSMUSG00000075588	Hoxb2	AI894218|Hox-2.8|Hoxbes2	homeobox B2	protein-coding	0.025000	0.527363	-34(GGGTTTATAAAC,-,0.00)
mm_139946.1	chr17	71204443	71204643	+	1	NA	NA	NA	-111	NM_001164885	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.015000	0.467662	87(TTTTTTAAAGAC,+,0.00)
mm_8262.1	chr1	139255620	139255820	-	1	NA	NA	NA	121356	NM_133239	170788	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	0.015000	0.477612	
mm_117576.1	chr13	86046803	86047003	-	1	NA	NA	NA	-108	NM_007749	12867	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	0.045000	0.492537	
mm_168308.1	chr11	107512208	107512408	-	1	NA	NA	NA	32780	NM_025894	66997	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0.030000	0.457711	
mm_102773.1	chr11	68386712	68386912	-	1	NA	NA	NA	14	NM_008744	18208	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0.150000	0.771144	
mm_14982.1	chr2	152160036	152160236	+	1	NA	NA	NA	16527	NM_009328	21407	Mm.3881	NM_009328	ENSMUSG00000068079	Tcf15	Meso1|bHLH-EC2	transcription factor 15	protein-coding	0.020000	0.477612	
mm_145917.1	chr18	66974950	66975150	+	1	NA	NA	NA	-25089	NR_040461	100503582	Mm.329508	NR_040461		Gm19784	-	predicted gene, 19784	ncRNA	0.000000	0.577114	-33(CACTATAAAAGG,-,0.00)
mm_119609.1	chr14	51104896	51105096	+	1	NA	NA	NA	8996	NM_201239	58809	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	0.040000	0.512438	
mm_121154.1	chr14	102720713	102720913	+	1	NA	NA	NA	261819	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.000000	0.427861	-54(CCCTATATGGTC,+,0.00),-32(GGCTATATAGGA,-,0.00)
mm_57785.1	chr6	129269473	129269673	-	1	NA	NA	NA	5796	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.005000	0.358209	
mm_166090.1	chr4	139821545	139821745	+	1	NA	NA	NA	11323	NM_011039	18509	Mm.218760	NM_011039	ENSMUSG00000028736	Pax7	Pax-7	paired box 7	protein-coding	0.135000	0.716418	
mm_103590.1	chr11	78245595	78245795	-	1	NA	NA	NA	8	NM_009297	20926	Mm.20755	NM_009297	ENSMUSG00000002052	Supt6	5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162	suppressor of Ty 6	protein-coding	0.085000	0.616915	
mm_55747.1	chr6	77979633	77979833	-	1	NA	NA	NA	-66	NM_009819	12386	Mm.34637	NM_009819	ENSMUSG00000063063	Ctnna2	AI481747|Catna|Catna2|cdf|chp	catenin (cadherin associated protein), alpha 2	protein-coding	0.155000	0.766169	
mm_51946.1	chr6	91726021	91726221	+	1	NA	NA	NA	42054	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.030000	0.542289	
mm_115263.1	chr13	110563127	110563327	+	1	NA	NA	NA	168183	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.005000	0.492537	-34(CCTTATATACAA,+,0.00)
mm_164665.1	chr17	44247389	44247589	+	1	NA	NA	NA	58917	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	0.000000	0.457711	
mm_129148.1	chr15	76206233	76206433	-	1	NA	NA	NA	-12	NM_001163540	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.050000	0.701493	
mm_21886.1	chr2	166155147	166155347	-	1	NA	NA	NA	38	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.115000	0.681592	
mm_112364.1	chr12	119160483	119160683	-	1	NA	NA	NA	77693	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.005000	0.288557	
mm_42800.1	chr5	121711970	121712170	+	1	NA	NA	NA	461	NM_009125	20239	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.195000	0.825871	
mm_103492.1	chr11	76571168	76571368	-	1	NA	NA	NA	116	NM_198895	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.075000	0.691542	
mm_92886.1	chr10	82763958	82764158	-	1	NA	NA	NA	83	NM_010914	18045	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	0.075000	0.621891	
mm_91354.1	chr10	27616833	27617033	-	1	NA	NA	NA	9	NM_008481	16773	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding	0.010000	0.606965	-50(ACCCTTTAAAGG,-,0.00),-49(CCCTTTAAAGGC,+,0.00),-49(CCCTTTAAAGGC,-,0.00),-48(CCTTTAAAGGCC,+,0.00)
mm_26912.1	chr3	20035205	20035405	-	1	NA	NA	NA	5	NM_001146323	12807	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	Hermansky-Pudlak syndrome 3	protein-coding	0.090000	0.651741	-61(GCCTCTTTAAGG,-,0.00),-59(CTCTTTAAGGAG,+,0.00)
mm_15626.1	chr2	162931428	162931628	+	1	NA	NA	NA	20	NM_026499	67996	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	0.205000	0.796020	
mm_161488.1	chr15	85042750	85042950	+	1	NA	NA	NA	5788	NM_133750	73225	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0.005000	0.542289	
mm_87803.1	chr10	60300457	60300657	+	1	NA	NA	NA	16096	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.040000	0.582090	
mm_46573.1	chr5	107289338	107289538	-	1	NA	NA	NA	157	NM_011578	21814	Mm.200775	NM_011578	ENSMUSG00000029287	Tgfbr3	1110036H20Rik|AU015626|AW215636|TBRIII	transforming growth factor, beta receptor III	protein-coding	0.095000	0.676617	
mm_7078.1	chr1	88274083	88274283	-	1	NA	NA	NA	3374	NM_172505	212427	Mm.384762	NM_172505		A730008H23Rik	mFleg1	RIKEN cDNA A730008H23 gene	protein-coding	0.015000	0.482587	
mm_130624.1	chr15	100403347	100403547	-	1	NA	NA	NA	19608	NM_001146161	18174	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0.035000	0.527363	
mm_163167.1	chr11	86757756	86757956	+	1	NA	NA	NA	-364	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.065000	0.582090	
mm_136031.1	chr16	77010779	77010979	-	1	NA	NA	NA	2	NR_040573	76601	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	0.020000	0.402985	
mm_121803.1	chr14	20181709	20181909	-	1	NA	NA	NA	-27	NM_021542	16529	Mm.68998	NM_021542	ENSMUSG00000023243	Kcnk5	KCNK5b|TASK-2	potassium channel, subfamily K, member 5	protein-coding	0.095000	0.666667	-4(GCTTAAAGAGCC,+,0.00)
mm_166494.1	chr5	150985532	150985732	+	1	NA	NA	NA	33025	NM_013823	16591	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.005000	0.467662	59(TGCCCTAAAAGC,-,0.00)
mm_56269.1	chr6	90988698	90988898	-	1	NA	NA	NA	128028	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.070000	0.716418	
mm_115569.1	chr13	10360732	10360932	-	1	NA	NA	NA	-29	NM_033269	12671	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.020000	0.507463	
mm_144534.1	chr18	25234209	25234409	+	1	NA	NA	NA	65289	NM_001033532	225289	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	0.000000	0.472637	
mm_129750.1	chr15	82338728	82338928	-	1	NA	NA	NA	-2	NM_008669	17939	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	0.080000	0.631841	
mm_137854.1	chr17	31105998	31106198	+	1	NA	NA	NA	23513	NM_011575	21786	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.025000	0.522388	
mm_122013.1	chr14	27336546	27336746	-	1	NA	NA	NA	609	NM_001289687	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.040000	0.542289	
mm_123452.1	chr14	65255781	65255981	-	1	NA	NA	NA	6582	NM_021458	14365	Mm.214687	NM_021458	ENSMUSG00000007989	Fzd3	AU020229|D930050A07Rik|Fz3	frizzled class receptor 3	protein-coding	0.000000	0.348259	
mm_68070.1	chr7	101868625	101868825	-	1	NA	NA	NA	2063	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.015000	0.512438	
mm_36286.1	chr4	63861207	63861407	-	1	NA	NA	NA	-23	NM_009403	21949	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.045000	0.537313	
mm_173359.1	chrY	90819349	90819549	+	1	NA	NA	NA	19957	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.497512	
mm_13584.1	chr2	112379175	112379375	+	1	NA	NA	NA	64	NM_024254	72425	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	0.110000	0.721393	
mm_150953.1	chr19	46341020	46341220	+	1	NA	NA	NA	-1642	NR_030468	751550		NR_030468	ENSMUSG00000070127	Mir146b	Mirn146b|mir-146b	microRNA 146b	ncRNA	0.010000	0.557214	-33(GTCTATTTAAGG,-,0.00),-31(CTATTTAAGGCG,+,0.00)
mm_12006.1	chr2	57268427	57268627	+	1	NA	NA	NA	30145	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.000000	0.482587	
mm_132389.1	chr16	34994852	34995052	+	1	NA	NA	NA	-27469	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.025000	0.537313	
mm_157489.1	chrX	48284172	48284372	-	1	NA	NA	NA	1154	NR_045916	100500713	Mm.396609	NR_045916	ENSMUSG00000097197	9530027J09Rik	-	RIKEN cDNA 9530027J09 gene	ncRNA	0.015000	0.427861	-61(TCTTAAATGGAG,+,0.00)
mm_29324.1	chr3	108017781	108017981	-	1	NA	NA	NA	92	NM_010358	14862	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	0.015000	0.532338	
mm_19529.1	chr2	94264624	94264824	-	1	NA	NA	NA	-3325	NR_030431	735259		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.030000	0.517413	
mm_36099.1	chr4	58553124	58553324	-	1	NA	NA	NA	69	NM_172989	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.130000	0.761194	
mm_121484.1	chr14	121107372	121107572	+	1	NA	NA	NA	71898	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.010000	0.388060	
mm_58683.1	chr7	12603487	12603687	+	1	NA	NA	NA	2957	NM_001104644	637908	Mm.469871	NM_001104644	ENSMUSG00000096002	Vmn2r53	EG637908|Gm471	vomeronasal 2, receptor 53	protein-coding	0.020000	0.482587	
mm_158577.1	chrX	150655487	150655687	-	1	NA	NA	NA	1849	NM_019548	56191	Mm.3597	NM_019548	ENSMUSG00000025272	Tro	AA409408|Maged3|Maged3l|Tnn|Trol|magphinin	trophinin	protein-coding	0.015000	0.502488	
mm_125556.1	chr15	58888845	58889045	+	1	NA	NA	NA	-284	NM_175226	75841	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0.175000	0.766169	
mm_44801.1	chr5	32907553	32907753	-	1	NA	NA	NA	43932	NM_001170567	277854	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	0.005000	0.412935	
mm_70664.1	chr8	14887930	14888130	+	1	NA	NA	NA	-506	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.010000	0.532338	-40(GTCTAGATAAGG,-,0.00)
mm_109915.1	chr12	8482025	8482225	-	1	NA	NA	NA	17860	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.025000	0.582090	
mm_135574.1	chr16	50364173	50364373	-	1	NA	NA	NA	68116	NM_027444	70508	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.025000	0.492537	
mm_28955.1	chr3	100489141	100489341	-	1	NA	NA	NA	-49	NM_001142952	74645	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.135000	0.815920	
mm_122817.1	chr14	54632187	54632387	-	1	NA	NA	NA	6977	NM_175204	73902	Mm.32009	NM_175204	ENSMUSG00000072423	Psmb11	5830406J20Rik|beta5t	proteasome (prosome, macropain) subunit, beta type, 11	protein-coding	0.110000	0.741294	
mm_99960.1	chr11	113649481	113649681	+	1	NA	NA	NA	52	NM_013581	16834	Mm.261620	NM_013581	ENSMUSG00000018661	Cog1	6030445I15|Ldlb|mKIAA1381	component of oligomeric golgi complex 1	protein-coding	0.130000	0.721393	
mm_155971.1	chrX	106105071	106105271	+	1	NA	NA	NA	-38104	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.025000	0.442786	
mm_78570.1	chr9	36475483	36475683	+	1	NA	NA	NA	-55	NM_001128510	671003	Mm.475847	NM_001128510	ENSMUSG00000090710	Gm9513	Pate-P|Pate11	predicted gene 9513	protein-coding	0.010000	0.517413	
mm_89575.1	chr10	95527068	95527268	+	1	NA	NA	NA	12006	NM_080560	93765	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.005000	0.318408	-38(CTTTTTATAACG,+,0.00)
mm_3444.1	chr1	150102682	150102882	+	1	NA	NA	NA	2751	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.427861	
mm_7348.1	chr1	105990187	105990387	-	1	NA	NA	NA	-119	NM_001122676	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.080000	0.636816	
mm_99651.1	chr11	105589899	105590099	+	1	NA	NA	NA	13	NM_181071	77097	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.180000	0.845771	
mm_138655.1	chr17	35868316	35868516	+	1	NA	NA	NA	1801	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.025000	0.691542	
mm_134978.1	chr16	32079042	32079242	-	1	NA	NA	NA	200	NM_177326	224105	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 protein (Cdc42/Rac)-activated kinase 2	protein-coding	0.140000	0.776119	
mm_39801.1	chr5	30622849	30623049	+	1	NA	NA	NA	-24987	NR_049199	100885838		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.020000	0.636816	
mm_43480.1	chr5	136697756	136697956	+	1	NA	NA	NA	3679	NM_001085387	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.030000	0.567164	25(CACTTTAAGAGG,-,0.00),26(ACTTTAAGAGGC,+,0.00)
mm_33889.1	chr4	136180105	136180305	+	1	NA	NA	NA	-577	NM_001305399	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.060000	0.606965	
mm_166499.1	chr6	3570462	3570662	-	1	NA	NA	NA	72169	NM_001167750	73288	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	0.000000	0.462687	
mm_58886.1	chr7	17087971	17088171	+	1	NA	NA	NA	14031	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.010000	0.542289	
mm_40380.1	chr5	52368653	52368853	+	1	NA	NA	NA	4949	NM_011435	20657	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	0.070000	0.651741	
mm_63862.1	chr7	135683943	135684143	+	1	NA	NA	NA	-31729	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.000000	0.437811	13(GAGTTTTAAAAG,-,0.00),14(AGTTTTAAAAGG,-,0.00),15(GTTTTAAAAGGC,+,0.00)
mm_22593.1	chr3	13748829	13749029	+	1	NA	NA	NA	-96064	NR_040598	75203	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	0.010000	0.268657	
mm_4776.1	chr1	182954699	182954899	+	1	NA	NA	NA	11	NM_016928	53791	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.040000	0.606965	
mm_107681.1	chr12	54622453	54622653	+	1	NA	NA	NA	23459	NR_035439	100316682		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	0.030000	0.477612	
mm_67164.1	chr7	73545996	73546196	-	1	NA	NA	NA	-4350	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.005000	0.412935	
mm_20524.1	chr2	130839986	130840186	-	1	NA	NA	NA	59	NM_029432	228602	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	0.145000	0.800995	
mm_153552.1	chr19	42128826	42129026	-	1	NA	NA	NA	67	NM_027106	69534	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0.085000	0.661692	
mm_163991.1	chr14	63177691	63177891	-	1	NA	NA	NA	1787	NM_010191	14137	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	0.090000	0.646766	
mm_67518.1	chr7	80904919	80905119	-	1	NA	NA	NA	43	NM_026523	68039	Mm.22246	NM_026523	ENSMUSG00000025723	Nmb	3110023K12Rik	neuromedin B	protein-coding	0.060000	0.626866	-35(TAGTTTAAAAGG,-,0.00)
mm_29243.1	chr3	107216017	107216217	-	1	NA	NA	NA	5615	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.417910	
mm_53199.1	chr6	125552867	125553067	+	1	NA	NA	NA	19	NM_011708	22371	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.015000	0.552239	-100(GCTTTTCAAGCC,+,0.00)
mm_18490.1	chr2	62602829	62603029	-	1	NA	NA	NA	-28908	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.010000	0.447761	
mm_125489.1	chr15	54745809	54746009	+	1	NA	NA	NA	-19	NM_010930	18133	Mm.5167	NM_010930	ENSMUSG00000037362	Nov	C130088N23Rik|CCN3	nephroblastoma overexpressed gene	protein-coding	0.045000	0.631841	
mm_48901.1	chr6	3201392	3201592	+	1	NA	NA	NA	-87027	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.095000	0.517413	
mm_36635.1	chr4	93335302	93335502	-	1	NA	NA	NA	109	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.180000	0.835821	
mm_124037.1	chr14	77033256	77033456	-	1	NA	NA	NA	3261	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding	0.030000	0.432836	
mm_127424.1	chr15	101267764	101267964	+	1	NA	NA	NA	1018	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.025000	0.562189	
mm_134659.1	chr16	22121177	22121377	-	1	NA	NA	NA	42022	NM_183029	319765	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.035000	0.522388	
mm_172935.1	chr9	78480179	78480379	+	1	NA	NA	NA	1445	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.015000	0.437811	
mm_94385.1	chr11	5520859	5521059	+	1	NA	NA	NA	318	NM_001271730	22433	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0.120000	0.671642	
mm_17065.1	chr2	22590201	22590401	-	1	NA	NA	NA	-32026	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.000000	0.338308	
mm_93775.1	chr10	120476132	120476332	-	1	NA	NA	NA	237	NM_001347170	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0.075000	0.651741	
mm_31376.1	chr4	47412682	47412882	+	1	NA	NA	NA	26566	NM_001312869	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.005000	0.333333	-53(GCTTAAATAAGC,+,0.00)
mm_72786.1	chr8	86884236	86884436	+	1	NA	NA	NA	922	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.040000	0.402985	10(GATTTTTAAAGC,-,0.00),11(ATTTTTAAAGCC,+,0.00)
mm_97793.1	chr11	82911187	82911387	+	1	NA	NA	NA	34	NM_178680	217012	Mm.295205	NM_178680	ENSMUSG00000018845	Unc45b	AA445617|Cmya4|D230041A13Rik|Unc45	unc-45 myosin chaperone B	protein-coding	0.010000	0.577114	
mm_46085.1	chr5	92346807	92347007	-	1	NA	NA	NA	1982	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.015000	0.343284	
mm_159312.1	chr2	181797047	181797247	+	1	NA	NA	NA	840	NM_001171680	17932	Mm.458718	NM_008665	ENSMUSG00000010505	Myt1	Nzf2|Nzf2a|Nzf2b|Nztf2	myelin transcription factor 1	protein-coding	0.010000	0.502488	
mm_170920.1	chr2	37261772	37261972	-	1	NA	NA	NA	-5079	NM_001081010	545417	Mm.379955	NM_001081010		Olfr367-ps	EG545417|MOR128-1|ORL1283|OTTMUSG00000012147|Olfr367	olfactory receptor 367, pseudogene	protein-coding	0.025000	0.522388	
mm_167968.1	chrX	152178866	152179066	+	1	NA	NA	NA	-43	NM_001005475	245666	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	0.005000	0.582090	
mm_165713.1	chr3	98858228	98858428	-	1	NA	NA	NA	1466	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.010000	0.393035	
mm_49979.1	chr6	40891341	40891541	+	1	NA	NA	NA	-3947	NM_139296	194357	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0.005000	0.487562	-2(CCTTTAAGACAG,+,0.00)
mm_76908.1	chr8	105851872	105852072	-	1	NA	NA	NA	36	NM_177150	320394	Mm.334775	NM_177150	ENSMUSG00000036672	Cenpt	G630055P03Rik	centromere protein T	protein-coding	0.110000	0.616915	
mm_68092.1	chr7	101921108	101921308	-	1	NA	NA	NA	-434	NM_001162974	69358	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0.015000	0.452736	
mm_2800.1	chr1	130851572	130851772	+	1	NA	NA	NA	-14105	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.000000	0.432836	
mm_15539.1	chr2	158383755	158383955	+	1	NA	NA	NA	8217	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.000000	0.363184	
mm_81630.1	chr9	110849447	110849647	+	1	NA	NA	NA	5041	NM_183103	74306	Mm.87419	NM_183103	ENSMUSG00000049719	Prss46	1700112C13Rik|79H19B|Tessp6	protease, serine 46	protein-coding	0.015000	0.587065	
mm_45428.1	chr5	67095895	67096095	-	1	NA	NA	NA	3131	NM_008888	18935	Mm.62505	NM_008888	ENSMUSG00000012520	Phox2b	Dilp1|NBPhox|Pmx2b|Px2b	paired-like homeobox 2b	protein-coding	0.085000	0.562189	
mm_61665.1	chr7	80779589	80779789	+	1	NA	NA	NA	23642	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.025000	0.562189	
mm_38753.1	chr4	147778233	147778433	-	1	NA	NA	NA	31455	NM_001127189	100041677	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157|OTTMUSG00000010679	zinc finger protein 984	protein-coding	0.000000	0.363184	
mm_94169.1	chr10	128804285	128804485	-	1	NA	NA	NA	-15	NM_178066	73827	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	0.020000	0.626866	
mm_22532.1	chr3	8509455	8509655	+	1	NA	NA	NA	28	NM_025285	20257	Mm.29580	NM_025285	ENSMUSG00000027500	Stmn2	AI159727|SCG10|Scgn10|Stmb2	stathmin-like 2	protein-coding	0.045000	0.547264	
mm_133090.1	chr16	62854225	62854425	+	1	NA	NA	NA	18	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0.105000	0.781095	
mm_39886.1	chr5	31116510	31116710	+	1	NA	NA	NA	-2	NM_021447	58522	Mm.143796	NM_021447	ENSMUSG00000062077	Trim54	4930486E09Rik|4930566I02Rik|MURF|MURF-3|MuRF3|Rnf30	tripartite motif-containing 54	protein-coding	0.010000	0.522388	
mm_156873.1	chrX	164906933	164907133	+	1	NA	NA	NA	73342	NM_001290523	76763	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	0.010000	0.422886	
mm_148432.1	chr19	3941861	3942061	+	1	NA	NA	NA	6775	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.025000	0.547264	
mm_2429.1	chr1	95667610	95667810	+	1	NA	NA	NA	-116	NM_001159745	20452	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.075000	0.606965	
mm_147540.1	chr18	53744469	53744669	-	1	NA	NA	NA	-22	NM_178686	225523	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	0.105000	0.696517	
mm_10764.1	chr2	24186359	24186559	+	1	NA	NA	NA	-17	NM_153511	215257	Mm.249379	NM_153511	ENSMUSG00000044103	Il1f9	Il36g	interleukin 1 family, member 9	protein-coding	0.005000	0.492537	-49(CCCCATAAAAGA,-,0.00)
mm_132935.1	chr16	49855573	49855773	+	1	NA	NA	NA	19	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.155000	0.776119	
mm_139392.1	chr17	52282447	52282647	+	1	NA	NA	NA	-320162	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.005000	0.427861	
mm_150697.1	chr19	42247465	42247665	+	1	NA	NA	NA	-13	NM_001141983	71146	Mm.329851	NM_027694	ENSMUSG00000042532	Golga7b	4933417O08Rik|AI839934	golgi autoantigen, golgin subfamily a, 7B	protein-coding	0.010000	0.537313	
mm_101523.1	chr11	32824476	32824676	-	1	NA	NA	NA	18	NM_027050	69351	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	0.015000	0.522388	
mm_6070.1	chr1	60908777	60908977	-	1	NA	NA	NA	-148	NM_009843	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.035000	0.422886	
mm_122431.1	chr14	45102242	45102442	-	1	NA	NA	NA	114231	NM_008964	19217	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.020000	0.447761	
mm_10501.1	chr2	15526394	15526594	+	1	NA	NA	NA	15	NM_001310455	102635496		NM_001310455	ENSMUSG00000075520	Malrd1	-	MAM and LDL receptor class A domain containing 1	protein-coding	0.000000	0.378109	
mm_22997.1	chr3	34019997	34020197	+	1	NA	NA	NA	18	NM_001113188	14359	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0.110000	0.701493	
mm_147363.1	chr18	43393168	43393368	-	1	NA	NA	NA	109	NM_009468	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.065000	0.601990	
mm_5323.1	chr1	22806057	22806257	-	1	NA	NA	NA	-433	NM_001012624	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.110000	0.741294	
mm_150284.1	chr19	34306937	34307137	+	1	NA	NA	NA	16378	NM_001146708	14102	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	0.015000	0.487562	-91(GGCTAGAAAAAC,-,0.00)
mm_159690.1	chr5	19226760	19226960	+	1	NA	NA	NA	-186	NM_001170746	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.105000	0.696517	
mm_160975.1	chr11	101011771	101011971	+	1	NA	NA	NA	2419	NM_001243051	11975	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0.025000	0.472637	
mm_103297.1	chr11	72489866	72490066	-	1	NA	NA	NA	-46	NM_153060	216892	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0.130000	0.751244	
mm_112432.1	chr13	4439304	4439504	+	1	NA	NA	NA	5061	NM_030611	83702	Mm.196666	NM_030611	ENSMUSG00000021210	Akr1c6	3alpha-HSD|Akr1c1|Hsd17b5	aldo-keto reductase family 1, member C6	protein-coding	0.005000	0.368159	
mm_42519.1	chr5	115557214	115557414	+	1	NA	NA	NA	-2153	NM_007475	11837	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.010000	0.487562	
mm_16189.1	chr2	172977641	172977841	+	1	NA	NA	NA	-2101	NM_012046	26972	Mm.23495	NM_012046	ENSMUSG00000005883	Spo11	AI449549|Spo11a|Spo11b	SPO11 meiotic protein covalently bound to DSB	protein-coding	0.010000	0.557214	83(GGACATAAAAGG,-,0.00)
mm_90948.1	chr10	13060293	13060493	-	1	NA	NA	NA	-30395	NM_009538	22634	Mm.287857	NM_009538	ENSMUSG00000019817	Plagl1	Lot1|Zac1	pleiomorphic adenoma gene-like 1	protein-coding	0.020000	0.462687	
mm_161435.1	chr15	60016350	60016550	-	1	NA	NA	NA	168	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.035000	0.562189	
mm_125570.1	chr15	59315008	59315208	+	1	NA	NA	NA	16	NM_009270	20775	Mm.296169	NM_009270	ENSMUSG00000022351	Sqle	AI323792	squalene epoxidase	protein-coding	0.125000	0.746269	
mm_74367.1	chr8	128418021	128418221	+	1	NA	NA	NA	58880	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.010000	0.412935	
mm_101915.1	chr11	50128036	50128236	-	1	NA	NA	NA	-3224	NM_001290759	76795	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.015000	0.432836	
mm_120669.1	chr14	70552160	70552360	+	1	NA	NA	NA	-1796	NM_021877	15460	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	0.040000	0.701493	
mm_103948.1	chr11	84068235	84068435	-	1	NA	NA	NA	22	NM_019819	56405	Mm.240885	NM_019819	ENSMUSG00000018648	Dusp14	1110014C10Rik|2310042C07Rik|D11Ertd395e|MKP-L|Mkp6	dual specificity phosphatase 14	protein-coding	0.170000	0.805970	
mm_97618.1	chr11	78952888	78953088	+	1	NA	NA	NA	27697	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.035000	0.601990	
mm_102263.1	chr11	55336476	55336676	-	1	NA	NA	NA	-24319	NM_001029988	245827	Mm.339363	NM_001029988	ENSMUSG00000055333	Fat2	EMI2|Fath2|Gm523|mKIAA0811	FAT atypical cadherin 2	protein-coding	0.015000	0.646766	
mm_72550.1	chr8	84021360	84021560	+	1	NA	NA	NA	-14	NM_028877	74337	Mm.250943	NM_028877	ENSMUSG00000047986	Palm3	4432412L15Rik|AL024300	paralemmin 3	protein-coding	0.050000	0.701493	
mm_148550.1	chr19	4711333	4711533	+	1	NA	NA	NA	210	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	0.030000	0.537313	
mm_7282.1	chr1	97661584	97661784	-	1	NA	NA	NA	334	NM_133825	52392	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.125000	0.761194	
mm_124903.1	chr15	10723835	10724035	+	1	NA	NA	NA	9035	NR_045065	75259	Mm.33928	NR_045063	ENSMUSG00000097058	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	0.010000	0.527363	
mm_48194.1	chr5	137530668	137530868	-	1	NA	NA	NA	-1174	NR_105846	102465227		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0.065000	0.741294	
mm_9276.1	chr1	171634110	171634310	-	1	NA	NA	NA	7690	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.507463	
mm_88894.1	chr10	81148319	81148519	+	1	NA	NA	NA	12148	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.070000	0.577114	
mm_152037.1	chr19	6118374	6118574	-	1	NA	NA	NA	112	NM_133678	66406	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.100000	0.651741	
mm_82118.1	chr9	123462000	123462200	+	1	NA	NA	NA	-16601	NM_013860	29806	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.045000	0.477612	
mm_89519.1	chr10	94354428	94354628	+	1	NA	NA	NA	-55825	NR_033209	215472	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	0.005000	0.298507	
mm_8136.1	chr1	136247444	136247644	-	1	NA	NA	NA	-13264	NM_028872	67313	Mm.36763	NM_028872	ENSMUSG00000041605	5730559C18Rik	1700034M08Rik|4933426C09Rik|AI586180|D1Mgi54	RIKEN cDNA 5730559C18 gene	protein-coding	0.015000	0.582090	
mm_153944.1	chr19	47508669	47508869	-	1	NA	NA	NA	-4213	NR_045322	100503104	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0.020000	0.562189	
mm_159631.1	chr4	138125888	138126088	+	1	NA	NA	NA	12530	NR_126429	73563	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	0.015000	0.587065	
mm_92871.1	chr10	82241199	82241399	-	1	NA	NA	NA	-24	NM_001105557	237411		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding	0.030000	0.557214	
mm_63579.1	chr7	128117931	128118131	+	1	NA	NA	NA	-11537	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.015000	0.398010	
mm_103162.1	chr11	70455144	70455344	-	1	NA	NA	NA	3313	NM_025397	66172	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0.010000	0.462687	
mm_15362.1	chr2	156420636	156420836	+	1	NA	NA	NA	-173	NM_001291122	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.085000	0.691542	
mm_166215.1	chr5	57718044	57718244	+	1	NA	NA	NA	63	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.110000	0.651741	
mm_91371.1	chr10	29535728	29535928	-	1	NA	NA	NA	39	NM_028351	72780	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0.075000	0.721393	
mm_109601.1	chr12	112679459	112679659	+	1	NA	NA	NA	719	NM_001100460	382639	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0.120000	0.656716	
mm_2715.1	chr1	128142767	128142967	+	1	NA	NA	NA	39561	NM_181750	226412	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	0.000000	0.298507	
mm_113221.1	chr13	27059287	27059487	+	1	NA	NA	NA	1817	NM_011164	19109	Mm.1270	NM_011164	ENSMUSG00000021342	Prl	AV290867|Gha1|Prl1a1	prolactin	protein-coding	0.020000	0.472637	
mm_33734.1	chr4	134118000	134118200	+	1	NA	NA	NA	10653	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.015000	0.522388	
mm_37267.1	chr4	118489947	118490147	-	1	NA	NA	NA	-198	NM_011587	21846	Mm.4345	NM_011587	ENSMUSG00000033191	Tie1	D430008P04Rik|TIE|tie-1	tyrosine kinase with immunoglobulin-like and EGF-like domains 1	protein-coding	0.020000	0.582090	
mm_70829.1	chr8	23142993	23143193	+	1	NA	NA	NA	-431	NR_037293	100526510		NR_037293	ENSMUSG00000106471	Mir3107	mir-486b|mmu-mir-3107|mmu-mir-486b	microRNA 3107	ncRNA	0.020000	0.507463	-24(CATTTTTAAAGG,-,0.00)
mm_118155.1	chr13	105250343	105250543	-	1	NA	NA	NA	42571	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.025000	0.517413	
mm_19287.1	chr2	90450628	90450828	-	1	NA	NA	NA	28446	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.000000	0.343284	
mm_28989.1	chr3	101287827	101288027	-	1	NA	NA	NA	12	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.010000	0.527363	
mm_140980.1	chr17	24717912	24718112	-	1	NA	NA	NA	45	NM_026205	67504	Mm.46159	NM_026205	ENSMUSG00000008482	Rnf151	1700010O16Rik|AV047371	ring finger protein 151	protein-coding	0.015000	0.537313	
mm_142803.1	chr17	50420072	50420272	-	1	NA	NA	NA	-89375	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.040000	0.621891	
mm_99182.1	chr11	100860235	100860435	+	1	NA	NA	NA	-149	NM_001164062	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.100000	0.711443	
mm_163129.1	chr11	78268014	78268214	+	1	NA	NA	NA	6360	NM_001002004	72503	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0.005000	0.447761	
mm_102166.1	chr11	53837553	53837753	-	1	NA	NA	NA	21603	NR_033332	622459	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115|OTTMUSG00000005650	predicted gene 12216	ncRNA	0.010000	0.432836	
mm_113835.1	chr13	47122602	47122802	+	1	NA	NA	NA	-18	NM_146042	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.095000	0.691542	
mm_24386.1	chr3	90254196	90254396	+	1	NA	NA	NA	15	NM_028881	74343	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2|mTORC2	CREB regulated transcription coactivator 2	protein-coding	0.110000	0.711443	
mm_70653.1	chr8	14381636	14381836	+	1	NA	NA	NA	285861	NM_172910	244310	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	discs, large (Drosophila) homolog-associated protein 2	protein-coding	0.025000	0.457711	-88(GCCCATTTATGG,-,0.00),-86(CCATTTATGGCT,+,0.00)
mm_56354.1	chr6	93717493	93717693	-	1	NA	NA	NA	195370	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.015000	0.457711	
mm_131399.1	chr16	14361477	14361677	+	1	NA	NA	NA	19	NM_008576	17250	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.150000	0.781095	
mm_90220.1	chr10	121033967	121034167	+	1	NA	NA	NA	63	NM_011915	24117	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0.070000	0.656716	
mm_156756.1	chrX	160438148	160438348	+	1	NA	NA	NA	47558	NM_001290445	237175	Mm.213016	NM_178712	ENSMUSG00000031298	Adgrg2	AW212196|B830041D06Rik|Gpr64|Me6	adhesion G protein-coupled receptor G2	protein-coding	0.015000	0.447761	
mm_132799.1	chr16	45094007	45094207	+	1	NA	NA	NA	54	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.030000	0.497512	
mm_101993.1	chr11	50943663	50943863	-	1	NA	NA	NA	9869	NM_008936	19127	Mm.1386	NM_008936	ENSMUSG00000044542	Prop1	Prop-1|df	paired like homeodomain factor 1	protein-coding	0.040000	0.582090	
mm_67555.1	chr7	81706763	81706963	-	1	NA	NA	NA	62	NM_011983	26557	Mm.228	NM_011983	ENSMUSG00000025813	Homer2	9330120H11Rik|AW539445|CPD|Vesl-2	homer scaffolding protein 2	protein-coding	0.180000	0.820896	
mm_20915.1	chr2	150608432	150608632	-	1	NA	NA	NA	-9	NM_027977	71881	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	0.090000	0.631841	
mm_78343.1	chr9	25297737	25297937	+	1	NA	NA	NA	45398	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.005000	0.338308	
mm_154313.1	chrM	393	593	+	1	NA	NA	NA	NA	NA									0.010000	0.323383	
mm_127984.1	chr15	12548491	12548691	-	1	NA	NA	NA	43965	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.000000	0.288557	-93(GCTTAAAAAGAG,+,0.00)
mm_147857.1	chr18	63694776	63694976	-	1	NA	NA	NA	-2517	NM_016792	53382	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.025000	0.447761	-33(CCCCATAAAAAC,-,0.00),-31(CCATAAAAACCC,+,0.00)
mm_152036.1	chr19	6118151	6118351	-	1	NA	NA	NA	335	NM_133678	66406	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.135000	0.766169	
mm_5030.1	chr1	193301880	193302080	+	1	NA	NA	NA	-14	NM_008484	16780	Mm.435441	NM_008484	ENSMUSG00000026639	Lamb3	-	laminin, beta 3	protein-coding	0.010000	0.601990	
mm_45371.1	chr5	66024977	66025177	-	1	NA	NA	NA	-20792	NR_027961	231253	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.040000	0.517413	11(GTATATATAGCC,+,0.00)
mm_75146.1	chr8	35588925	35589125	-	1	NA	NA	NA	-5	NR_040376	100504714	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0.050000	0.651741	
mm_58505.1	chr7	3981033	3981233	+	1	NA	NA	NA	-65632	NR_028115	18726	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	0.000000	0.417910	80(CACTTGAAAAGG,-,0.00)
mm_2431.1	chr1	95667739	95667939	+	1	NA	NA	NA	-245	NM_001159745	20452	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.060000	0.542289	
mm_91880.1	chr10	59616581	59616781	-	1	NA	NA	NA	11	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.100000	0.716418	
mm_99100.1	chr11	100052010	100052210	+	1	NA	NA	NA	-1559	NM_010659	16660	Mm.439673	NM_010659	ENSMUSG00000048981	Krt31	Ha1|Kha1|Krt1-1|MKHA-1	keratin 31	protein-coding	0.005000	0.452736	-35(TCCGATAAAAGG,-,0.00)
mm_46411.1	chr5	104093212	104093412	-	1	NA	NA	NA	-15704	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.010000	0.412935	
mm_34539.1	chr4	149504557	149504757	+	1	NA	NA	NA	-13584	NM_023465	67087	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0.015000	0.462687	81(GCTTTAAAATGG,+,0.00)
mm_28042.1	chr3	83859645	83859845	-	1	NA	NA	NA	-18137	NM_011905	24088	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.025000	0.492537	-34(CACTATAAAAAC,-,0.00)
mm_106217.1	chr11	117040074	117040274	-	1	NA	NA	NA	-36609	NR_027059	76972	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0.000000	0.517413	
mm_139126.1	chr17	47504979	47505179	+	1	NA	NA	NA	28	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.065000	0.641791	
mm_117354.1	chr13	69772512	69772712	-	1	NA	NA	NA	-32715	NM_001145162	76980	Mm.23960	NM_001145162	ENSMUSG00000052981	Ube2ql1	3110006E14Rik	ubiquitin-conjugating enzyme E2Q family-like 1	protein-coding	0.015000	0.517413	
mm_169626.1	chr15	41234195	41234395	+	1	NA	NA	NA	-213187	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.015000	0.467662	-29(TCTTTTAAATAC,+,0.00)
mm_66407.1	chr7	44478841	44479041	-	1	NA	NA	NA	-5576	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.393035	
mm_36391.1	chr4	77454080	77454280	-	1	NA	NA	NA	757715	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.015000	0.497512	-36(CTCTTTTAAAAG,-,0.00),-34(CTTTTAAAAGTG,+,0.00)
mm_75672.1	chr8	67861971	67862171	-	1	NA	NA	NA	-43776	NM_027626	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.000000	0.288557	
mm_64006.1	chr7	140203603	140203803	+	1	NA	NA	NA	-935	NM_001011814	258055	Mm.377339	NM_001011814	ENSMUSG00000050366	Olfr524	MOR103-14P	olfactory receptor 524	protein-coding	0.005000	0.532338	
mm_110055.1	chr12	20920964	20921164	-	1	NA	NA	NA	-105285	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.145000	0.776119	
mm_106675.1	chr11	121743980	121744180	-	1	NA	NA	NA	41653	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.000000	0.517413	-71(CCTTTTCTGGGG,+,0.00)
mm_86973.1	chr10	25404468	25404668	+	1	NA	NA	NA	-3800	NM_013511	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.015000	0.407960	
mm_168751.1	chr12	115834345	115834545	-	1	NA	NA	NA	-138651	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.010000	0.462687	
mm_126985.1	chr15	94205223	94205423	+	1	NA	NA	NA	-41879	NR_045629	328594	Mm.135523	NR_045629		D630010B17Rik	Gm811	RIKEN cDNA D630010B17 gene	ncRNA	0.015000	0.373134	
mm_136104.1	chr16	85162939	85163139	-	1	NA	NA	NA	10668	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.010000	0.522388	
mm_54803.1	chr6	41701811	41702011	-	1	NA	NA	NA	2414	NM_032540	23925	Mm.19958	NM_032540	ENSMUSG00000029866	Kel	CD238|Ece3	Kell blood group	protein-coding	0.020000	0.467662	
mm_143679.1	chr17	80060905	80061105	-	1	NA	NA	NA	1263	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.025000	0.437811	
mm_113041.1	chr13	23571287	23571487	+	1	NA	NA	NA	-13	NM_178196	319181	Mm.261673	NM_178196	ENSMUSG00000058385	Hist1h2bg	-	histone cluster 1, H2bg	protein-coding	0.030000	0.462687	-33(CTCTATAAAATG,-,0.00)
mm_72757.1	chr8	85492497	85492697	+	1	NA	NA	NA	-20	NM_173866	108682	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.105000	0.686567	
mm_19460.1	chr2	92392266	92392466	-	1	NA	NA	NA	317	NM_001202446	19099	Mm.2720	NM_011162	ENSMUSG00000027223	Mapk8ip1	IB1|JIP-1|Jip1|Prkm8ip|Skip|mjip-2a	mitogen-activated protein kinase 8 interacting protein 1	protein-coding	0.020000	0.651741	
mm_91001.1	chr10	14545116	14545316	-	1	NA	NA	NA	-180	NM_001002268	215798	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.125000	0.716418	
mm_127729.1	chr15	103272790	103272990	+	1	NA	NA	NA	-28	NM_019817	56447	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	0.070000	0.616915	-57(GCCTCTTTGAGG,-,0.00)
mm_24148.1	chr3	88336180	88336380	+	1	NA	NA	NA	20	NM_178246	229512	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.100000	0.666667	
mm_13248.1	chr2	98663630	98663830	+	1	NA	NA	NA	1196073	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.015000	0.358209	
mm_11687.1	chr2	35622099	35622299	+	1	NA	NA	NA	218	NM_001114124	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.115000	0.766169	
mm_38525.1	chr4	141425486	141425686	-	1	NA	NA	NA	4807	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.020000	0.517413	
mm_92741.1	chr10	80941802	80942002	-	1	NA	NA	NA	11811	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.005000	0.492537	30(CTTTATAGAGTA,+,0.00)
mm_82317.1	chr9	7965716	7965916	-	1	NA	NA	NA	38780	NM_001171147	22601	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	0.010000	0.447761	
mm_31139.1	chr4	43381959	43382159	+	1	NA	NA	NA	77	NM_001037709	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.165000	0.796020	
mm_3272.1	chr1	136566581	136566781	+	1	NA	NA	NA	-58220	NM_177643	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.005000	0.532338	
mm_42203.1	chr5	112326335	112326535	+	1	NA	NA	NA	66	NM_018783	54723	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	0.130000	0.696517	
mm_30930.1	chr4	32982893	32983093	+	1	NA	NA	NA	-5	NM_027491	52187	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	0.035000	0.676617	
mm_114514.1	chr13	72632520	72632720	+	1	NA	NA	NA	3823	NM_010574	16372	Mm.28888	NM_010574	ENSMUSG00000001504	Irx2	-	Iroquois related homeobox 2 (Drosophila)	protein-coding	0.005000	0.592040	
mm_39036.1	chr4	152317654	152317854	-	1	NA	NA	NA	871	NM_001033489	433809	Mm.156205	NM_001033489	ENSMUSG00000058498	Rnf207	D330010C22Rik|Gm143	ring finger protein 207	protein-coding	0.025000	0.626866	
mm_28556.1	chr3	93433751	93433951	-	1	NA	NA	NA	5360	NR_039585	100628630		NR_039585	ENSMUSG00000093269	Mir5124a	Mir5124|mmu-mir-5124|mmu-mir-5124a|mu-mir-5124	microRNA 5124a	ncRNA	0.025000	0.542289	
mm_87521.1	chr10	53280160	53280360	+	1	NA	NA	NA	-10	NR_038015	100502820	Mm.55827	NR_038015		Gm19395	-	predicted gene, 19395	ncRNA	0.015000	0.398010	-32(TGTCATAAAAGC,-,0.00)
mm_159333.1	chr3	40894146	40894346	+	1	NA	NA	NA	-31	NM_026622	269423	Mm.32373	NM_026622	ENSMUSG00000037818	Abhd18	2310068E01Rik|3110057O12Rik|AI645591	abhydrolase domain containing 18	protein-coding	0.065000	0.671642	
mm_95094.1	chr11	33963189	33963389	+	1	NA	NA	NA	276	NM_031169	16533	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	0.015000	0.621891	
mm_18680.1	chr2	71342747	71342947	-	1	NA	NA	NA	24707	NM_172436	78830	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.015000	0.467662	
mm_98122.1	chr11	87127173	87127373	+	1	NA	NA	NA	198	NM_197987	68729	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.110000	0.701493	
mm_60845.1	chr7	45785489	45785689	+	1	NA	NA	NA	209	NM_001290990	381983	Mm.44928	NM_001005511	ENSMUSG00000062044	Lmtk3	BC059845|aatyk3	lemur tyrosine kinase 3	protein-coding	0.065000	0.721393	
mm_25339.1	chr3	106721698	106721898	+	1	NA	NA	NA	116	NM_001286685	321000	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	0.060000	0.601990	
mm_84880.1	chr9	79718696	79718896	-	1	NA	NA	NA	-74	NM_001290308	12816	Mm.3819	NM_007730	ENSMUSG00000032332	Col12a1	-	collagen, type XII, alpha 1	protein-coding	0.085000	0.621891	
mm_44359.1	chr5	17796941	17797141	-	1	NA	NA	NA	38855	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.383085	
mm_157459.1	chrX	43428962	43429162	-	1	NA	NA	NA	-154278	NM_011855	23963	Mm.327698	NM_011855	ENSMUSG00000016150	Tenm1	Odz1|Odz2|TCAP-1|Ten-m1|ten-1	teneurin transmembrane protein 1	protein-coding	0.055000	0.547264	
mm_128803.1	chr15	66943025	66943225	-	1	NA	NA	NA	26516	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.010000	0.522388	
mm_114122.1	chr13	55190358	55190558	+	1	NA	NA	NA	-19324	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.080000	0.651741	
mm_102913.1	chr11	69579236	69579436	-	1	NA	NA	NA	-12	NM_144824	216853	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	0.085000	0.606965	
mm_172351.1	chr7	114120122	114120322	+	1	NA	NA	NA	-2441	NM_025846	66922	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.035000	0.582090	
mm_146750.1	chr18	16745171	16745371	-	1	NA	NA	NA	63975	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.000000	0.482587	
mm_27347.1	chr3	50414808	50415008	-	1	NA	NA	NA	28705	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.353234	
mm_141238.1	chr17	27436935	27437135	-	1	NA	NA	NA	66498	NM_001013385	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.015000	0.562189	
mm_36292.1	chr4	64276500	64276700	-	1	NA	NA	NA	-229585	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding	0.000000	0.328358	5(TTCCATATAAGA,-,0.00)
mm_89824.1	chr10	105574452	105574652	+	1	NA	NA	NA	1	NR_038032	327812	Mm.191660	NR_038032	ENSMUSG00000085282	Gm15663	9330159K06|OTTMUSG00000025047	predicted gene 15663	ncRNA	0.015000	0.611940	
mm_144573.1	chr18	31856980	31857180	+	1	NA	NA	NA	53023	NM_001170966	74320	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	0.030000	0.512438	
mm_54370.1	chr6	31131622	31131822	-	1	NA	NA	NA	-68629	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.010000	0.393035	
mm_113928.1	chr13	49608976	49609176	+	1	NA	NA	NA	1005	NM_008760	18295	Mm.4258	NM_008760	ENSMUSG00000021390	Ogn	3110079A16Rik|OG|OIF|SLRR3A|mimecan|mimican	osteoglycin	protein-coding	0.005000	0.402985	-4(GCTTTTAAAAAC,+,0.00),-4(GCTTTTAAAAAC,-,0.00)
mm_144048.1	chr17	90447555	90447755	-	1	NA	NA	NA	8225	NM_001346958	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.000000	0.348259	
mm_15581.1	chr2	158723345	158723545	+	1	NA	NA	NA	-44654	NM_027975	71878	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	0.010000	0.557214	
mm_89457.1	chr10	93162020	93162220	+	1	NA	NA	NA	-665	NR_035452	100316689		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	0.035000	0.432836	
mm_123725.1	chr14	70153732	70153932	-	1	NA	NA	NA	-41	NM_146055	219158	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	0.055000	0.577114	
mm_120374.1	chr14	64587384	64587584	+	1	NA	NA	NA	-631	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA	0.075000	0.651741	
mm_80333.1	chr9	75051978	75052178	+	1	NA	NA	NA	14346	NM_021548	59046	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	0.015000	0.407960	
mm_133159.1	chr16	70402680	70402880	+	1	NA	NA	NA	88831	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.000000	0.412935	
mm_65756.1	chr7	28629632	28629832	-	1	NA	NA	NA	1283	NM_175319	101744	Mm.26022	NM_175319	ENSMUSG00000037469	Acp7	AU017076|C330005M16Rik|Papl	acid phosphatase 7, tartrate resistant	protein-coding	0.030000	0.517413	
mm_105273.1	chr11	102406706	102406906	-	1	NA	NA	NA	711	NM_026542	68066	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.025000	0.472637	
mm_85472.1	chr9	105819382	105819582	-	1	NA	NA	NA	8603	NM_001102607	245026	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0.050000	0.601990	
mm_117677.1	chr13	93674205	93674405	-	1	NA	NA	NA	-3	NM_022884	64918	Mm.29981	NM_022884	ENSMUSG00000042118	Bhmt2	C81077|D13Ucla2	betaine-homocysteine methyltransferase 2	protein-coding	0.065000	0.666667	
mm_11683.1	chr2	35581527	35581727	+	1	NA	NA	NA	-1213	NM_001290637	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.070000	0.636816	
mm_121093.1	chr14	99301806	99302006	+	1	NA	NA	NA	3215	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.025000	0.527363	
mm_49132.1	chr6	8948486	8948686	+	1	NA	NA	NA	-1433	NM_008751	18231	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.115000	0.611940	
mm_116818.1	chr13	54565231	54565431	-	1	NA	NA	NA	51	NM_001252647	97820	Mm.24593	NM_133797	ENSMUSG00000025871	4833439L19Rik	4930558H15Rik|C81457|Kiaa1191|P33monox	RIKEN cDNA 4833439L19 gene	protein-coding	0.100000	0.651741	
mm_101976.1	chr11	50326001	50326201	-	1	NA	NA	NA	-428	NM_001110500	12330	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	0.035000	0.542289	
mm_24441.1	chr3	90601691	90601891	+	1	NA	NA	NA	1576	NM_011310	20197	Mm.440044	NM_011310	ENSMUSG00000001021	S100a3	S100E	S100 calcium binding protein A3	protein-coding	0.030000	0.527363	
mm_171877.1	chr5	3236295	3236495	+	1	NA	NA	NA	-107498	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.045000	0.437811	
mm_42542.1	chr5	115974755	115974955	+	1	NA	NA	NA	49573	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.025000	0.557214	
mm_84442.1	chr9	66124761	66124961	-	1	NA	NA	NA	25	NM_019727	56440	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	0.065000	0.641791	50(CTGTCTATAAAG,-,0.00)
mm_126525.1	chr15	81949117	81949317	+	1	NA	NA	NA	11713	NM_001282040	29858	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	0.020000	0.616915	
mm_145752.1	chr18	64661071	64661271	+	1	NA	NA	NA	-171	NM_001001488	54670	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0.060000	0.661692	
mm_41802.1	chr5	103753854	103754054	+	1	NA	NA	NA	-208	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.135000	0.766169	-88(GCCCTTAAAAGG,-,0.00),-87(CCCTTAAAAGGA,+,0.00),-86(CCTTAAAAGGAG,+,0.00)
mm_56680.1	chr6	113843387	113843587	-	1	NA	NA	NA	48052	NM_001036684	11941	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.015000	0.597015	
mm_137063.1	chr17	19435233	19435433	+	1	NA	NA	NA	-69478	NM_001104562	627537	Mm.469858	NM_001104562	ENSMUSG00000091859	Vmn2r100	EG627537	vomeronasal 2, receptor 100	protein-coding	0.020000	0.502488	
mm_120569.1	chr14	69029297	69029497	+	1	NA	NA	NA	108	NM_009285	20855	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	0.040000	0.527363	
mm_9615.1	chr1	176213920	176214120	-	1	NA	NA	NA	-78	NM_001195816	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	0.025000	0.527363	
mm_129934.1	chr15	84855010	84855210	-	1	NA	NA	NA	1019	NM_001081166	271305	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.105000	0.666667	
mm_93006.1	chr10	87057809	87058009	-	1	NA	NA	NA	-137	NM_029685	76640	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding	0.020000	0.517413	46(CAGCTTAAAAAG,-,0.00),48(GCTTAAAAAGAT,+,0.00)
mm_142250.1	chr17	37483476	37483676	-	1	NA	NA	NA	-22	NM_001347387	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.005000	0.442786	
mm_98914.1	chr11	98210712	98210912	+	1	NA	NA	NA	7507	NM_001109626	69131	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.010000	0.442786	
mm_170137.1	chr17	39847774	39847974	+	1	NA	NA	NA	4877	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.090000	0.626866	
mm_29643.1	chr3	121846988	121847188	-	1	NA	NA	NA	-31873	NM_008991	19299	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.000000	0.482587	
mm_47482.1	chr5	123865348	123865548	-	1	NA	NA	NA	68	NM_030701	80885	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0.040000	0.522388	
mm_74108.1	chr8	122879178	122879378	+	1	NA	NA	NA	30904	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.010000	0.512438	
mm_27757.1	chr3	69598837	69599037	-	1	NA	NA	NA	23	NM_020026	26879	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0.200000	0.781095	
mm_50242.1	chr6	42351655	42351855	+	1	NA	NA	NA	1927	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.015000	0.557214	
mm_71868.1	chr8	69112374	69112574	+	1	NA	NA	NA	-23252	NM_153054	110877	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	0.025000	0.457711	
mm_93172.1	chr10	93311017	93311217	-	1	NA	NA	NA	42	NM_001322268	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.155000	0.815920	
mm_136680.1	chr17	6659084	6659284	+	1	NA	NA	NA	-3245	NM_001166627	100040531	Mm.457987	NM_001166627	ENSMUSG00000095677	Dynlt1f	100040631|Dynlt1e	dynein light chain Tctex-type 1F	protein-coding	0.025000	0.552239	
mm_120701.1	chr14	70941813	70942013	+	1	NA	NA	NA	51806	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.005000	0.482587	
mm_110327.1	chr12	34916995	34917195	-	1	NA	NA	NA	0	NM_001271386	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.005000	0.452736	
mm_19078.1	chr2	77817393	77817593	-	1	NA	NA	NA	-677	NM_178723	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.015000	0.358209	
mm_12767.1	chr2	79284706	79284906	+	1	NA	NA	NA	29380	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.020000	0.393035	
mm_134456.1	chr16	18411799	18411999	-	1	NA	NA	NA	1595	NM_001111063	12846	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.025000	0.606965	
mm_171544.1	chr4	147021761	147021961	+	1	NA	NA	NA	11	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.030000	0.532338	
mm_47317.1	chr5	122459531	122459731	-	1	NA	NA	NA	37187	NM_019805	56317	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0.010000	0.497512	
mm_9988.1	chr1	191318008	191318208	-	1	NA	NA	NA	10	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.085000	0.701493	
mm_68131.1	chr7	102210174	102210374	-	1	NA	NA	NA	-61	NM_001291358	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.095000	0.651741	
mm_167928.1	chrX	103705942	103706142	+	1	NA	NA	NA	75456	NM_029158	75064	Mm.159414	NM_029158	ENSMUSG00000031330	Zcchc13	4930513O09Rik|Cnbp2	zinc finger, CCHC domain containing 13	protein-coding	0.025000	0.472637	58(TGCCTTTAAAAG,-,0.00),59(GCCTTTAAAAGC,+,0.00),59(GCCTTTAAAAGC,-,0.00),60(CCTTTAAAAGCA,+,0.00)
mm_128882.1	chr15	73102780	73102980	-	1	NA	NA	NA	12468	NM_053068	93696	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0.005000	0.507463	
mm_131394.1	chr16	14317357	14317557	+	1	NA	NA	NA	-125	NM_025345	66086	Mm.42072	NM_025345	ENSMUSG00000022677	Fopnl	0610037P05Rik	Fgfr1op N-terminal like	protein-coding	0.085000	0.611940	
mm_167043.1	chr7	80285026	80285226	+	1	NA	NA	NA	-9325	NM_145150	233406	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	0.025000	0.527363	
mm_21662.1	chr2	164425096	164425296	-	1	NA	NA	NA	17992	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.010000	0.308458	-12(CTATTTATAGCT,+,0.00)
mm_152337.1	chr19	9982330	9982530	-	1	NA	NA	NA	-216	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.050000	0.547264	
mm_52701.1	chr6	119267383	119267583	+	1	NA	NA	NA	30957	NM_001347427	319734	Mm.440773	NM_001033382	ENSMUSG00000041460	Cacna2d4	5730412N02Rik|BE686333	calcium channel, voltage-dependent, alpha 2/delta subunit 4	protein-coding	0.010000	0.512438	
mm_42282.1	chr5	114248174	114248374	+	1	NA	NA	NA	25487	NM_148935	116810	Mm.17709	NM_148935	ENSMUSG00000042002	Foxn4	-	forkhead box N4	protein-coding	0.040000	0.606965	
mm_108386.1	chr12	80945432	80945632	+	1	NA	NA	NA	33	NM_001347415	20384	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0.070000	0.582090	
mm_150964.1	chr19	46500082	46500282	+	1	NA	NA	NA	-1466	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.070000	0.656716	
mm_52253.1	chr6	107059535	107059735	+	1	NA	NA	NA	-259548	NM_175357	58799	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.000000	0.502488	
mm_105032.1	chr11	100516276	100516476	-	1	NA	NA	NA	11624	NM_134037	104112	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	0.025000	0.582090	
mm_132898.1	chr16	48870845	48871045	+	1	NA	NA	NA	-1663	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.015000	0.462687	
mm_100156.1	chr11	116210885	116211085	+	1	NA	NA	NA	-5017	NR_004853	69681	Mm.33677	NR_004853	ENSMUSG00000092300	Cdk3-ps	2310050O10Rik|Cdk3	cyclin-dependent kinase 3, pseudogene	pseudo	0.015000	0.502488	69(TCTTATAAGGAC,+,0.00)
mm_26712.1	chr3	157993539	157993739	+	1	NA	NA	NA	38115	NM_001093753	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.000000	0.452736	
mm_29415.1	chr3	108972524	108972724	-	1	NA	NA	NA	32067	NM_001078646	66715	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0.010000	0.388060	
mm_45985.1	chr5	90476496	90476696	-	1	NA	NA	NA	-14118	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.010000	0.412935	
mm_156443.1	chrX	142390625	142390825	+	1	NA	NA	NA	-190	NM_019477	50790	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	0.080000	0.651741	
mm_170908.1	chr2	31236492	31236692	+	1	NA	NA	NA	-9331	NM_019681	14299	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.000000	0.497512	
mm_39484.1	chr5	20882078	20882278	+	1	NA	NA	NA	-54	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.160000	0.741294	
mm_140703.1	chr17	14676137	14676337	-	1	NA	NA	NA	18025	NM_011581	21826	Mm.26688	NM_011581	ENSMUSG00000023885	Thbs2	TSP2|Thbs-2	thrombospondin 2	protein-coding	0.030000	0.517413	
mm_25217.1	chr3	103851146	103851346	+	1	NA	NA	NA	-8549	NR_104070	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.005000	0.487562	
mm_76457.1	chr8	85299409	85299609	-	1	NA	NA	NA	-12	NM_022997	65114	Mm.296520	NM_022997	ENSMUSG00000031696	Vps35	AI647796|Mem3	VPS35 retromer complex component	protein-coding	0.095000	0.661692	
mm_2089.1	chr1	87700302	87700502	+	1	NA	NA	NA	-55609	NM_029846	77040	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.010000	0.497512	
mm_48588.1	chr5	143759673	143759873	-	1	NA	NA	NA	1419	NR_015486	320064	Mm.332820	NR_015486		D130017N08Rik	1700012G11Rik	RIKEN cDNA D130017N08 gene	ncRNA	0.020000	0.527363	
mm_13931.1	chr2	121008349	121008549	+	1	NA	NA	NA	41	NM_010761	17151	Mm.7838	NM_010761	ENSMUSG00000023572	Ccndbp1	AU022347|DIP1|GCIP|Maid|SECC-8|SSEC-8	cyclin D-type binding-protein 1	protein-coding	0.085000	0.626866	
mm_123081.1	chr14	55745368	55745568	-	1	NA	NA	NA	216	NM_026819	52585	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.055000	0.552239	
mm_131786.1	chr16	22898073	22898273	+	1	NA	NA	NA	-3787	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.010000	0.452736	
mm_35657.1	chr4	43558043	43558243	-	1	NA	NA	NA	4440	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.015000	0.572139	
mm_8556.1	chr1	155232590	155232790	-	1	NA	NA	NA	73987	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.025000	0.577114	25(TACCATTAAAGC,-,0.00)
mm_54819.1	chr6	42351247	42351447	-	1	NA	NA	NA	1519	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.020000	0.537313	
mm_172230.1	chr6	67508607	67508807	-	1	NA	NA	NA	-16852	NM_144548	209590	Mm.221227	NM_144548	ENSMUSG00000049093	Il23r	IL-23R	interleukin 23 receptor	protein-coding	0.030000	0.452736	
mm_105585.1	chr11	106715109	106715309	-	1	NA	NA	NA	72	NM_001305158	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.020000	0.542289	
mm_34952.1	chr4	155962316	155962516	+	1	NA	NA	NA	104	NM_026125	67389	Mm.29140	NM_026125	ENSMUSG00000023571	Fam132a	1110035L05Rik|C1qdc2|CTRP12|alipolin	family with sequence similarity 132, member A	protein-coding	0.060000	0.656716	
mm_104459.1	chr11	95065850	95066050	-	1	NA	NA	NA	3248	NM_001306071	16400	Mm.57035	NM_013565	ENSMUSG00000001507	Itga3	AA407068|CD49C|GAPB3	integrin alpha 3	protein-coding	0.045000	0.557214	
mm_130289.1	chr15	97008635	97008835	-	1	NA	NA	NA	47221	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.025000	0.487562	
mm_2249.1	chr1	91057838	91058038	+	1	NA	NA	NA	4494	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.015000	0.487562	
mm_124505.1	chr14	121879577	121879777	-	1	NA	NA	NA	-269	NR_130999	78312	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0.030000	0.457711	
mm_130148.1	chr15	91048008	91048208	-	1	NA	NA	NA	1843	NM_001109041	16564	Mm.41379	NM_016705	ENSMUSG00000022629	Kif21a	-	kinesin family member 21A	protein-coding	0.015000	0.298507	
mm_16880.1	chr2	12979510	12979710	-	1	NA	NA	NA	31254	NM_153155	227580	Mm.229322	NM_153155	ENSMUSG00000049630	C1ql3	1110065A22Rik|AI661623|C1ql|C1qtnf13|CTRP13|K100	C1q-like 3	protein-coding	0.005000	0.328358	
mm_125463.1	chr15	52712315	52712515	+	1	NA	NA	NA	-30	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.115000	0.641791	
mm_22186.1	chr2	173218868	173219068	-	1	NA	NA	NA	-46	NM_001139519	58203	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.030000	0.512438	
mm_58653.1	chr7	6383234	6383434	+	1	NA	NA	NA	16	NM_175247	22690	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding	0.080000	0.681592	-83(TCTTTTAGGGCG,+,0.00)
mm_91734.1	chr10	45578006	45578206	-	1	NA	NA	NA	277	NM_172473	209462	Mm.458633	NM_172473	ENSMUSG00000038822	Hace1	1700042J16Rik|A730034A22Rik|BC025474	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	protein-coding	0.175000	0.771144	
mm_1421.1	chr1	67172731	67172931	+	1	NA	NA	NA	49804	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.020000	0.462687	
mm_84955.1	chr9	83254390	83254590	-	1	NA	NA	NA	-107883	NM_026122	94353	Mm.244426	NM_026122	ENSMUSG00000066456	Hmgn3	1110002A15Rik|6330514M13Rik|BB071015|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding	0.030000	0.522388	
mm_85737.1	chr9	108518117	108518317	-	1	NA	NA	NA	1130	NM_175143	69232	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik	glutamine-rich 1	protein-coding	0.045000	0.487562	
mm_146780.1	chr18	20061481	20061681	-	1	NA	NA	NA	-2027	NM_001317365	13506	Mm.280547	NM_013505	ENSMUSG00000024331	Dsc2	AW228162	desmocollin 2	protein-coding	0.010000	0.462687	
mm_53885.1	chr6	3345947	3346147	-	1	NA	NA	NA	53524	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.005000	0.422886	-98(CTTTTTATATCA,+,0.00)
mm_61441.1	chr7	75457236	75457436	+	1	NA	NA	NA	1802	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.000000	0.318408	-58(TAGTATAAATGG,-,0.00)
mm_12592.1	chr2	74133414	74133614	+	1	NA	NA	NA	174203	NR_040501	73962	Mm.50289	NR_040501	ENSMUSG00000085405	4930441J16Rik	Astx1a|Astx1b|Astx1c	RIKEN cDNA 4930441J16 gene	ncRNA	0.005000	0.452736	
mm_44433.1	chr5	21055761	21055961	-	1	NA	NA	NA	-64	NM_011203	19248	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.160000	0.800995	
mm_120012.1	chr14	55745627	55745827	+	1	NA	NA	NA	34	NM_026403	67842	Mm.180338	NM_026403	ENSMUSG00000019297	Nop9	2610027L16Rik	NOP9 nucleolar protein	protein-coding	0.125000	0.696517	
mm_62833.1	chr7	113765809	113766009	+	1	NA	NA	NA	-89	NM_145584	233744	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.030000	0.582090	
mm_129046.1	chr15	75216093	75216293	-	1	NA	NA	NA	-52228	NM_008530	17071	Mm.377095	NM_008530	ENSMUSG00000022583	Ly6f	-	lymphocyte antigen 6 complex, locus F	protein-coding	0.005000	0.467662	
mm_46829.1	chr5	113219471	113219671	-	1	NA	NA	NA	-7338	NM_001033428	333048	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	0.015000	0.597015	
mm_149224.1	chr19	10022684	10022884	+	1	NA	NA	NA	4556	NM_144538	74760	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	0.005000	0.557214	
mm_146465.1	chr18	86914012	86914212	+	1	NA	NA	NA	202047	NM_172633	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.000000	0.293532	
mm_161356.1	chr14	55971329	55971529	+	1	NA	NA	NA	1	NM_001024714	545055	Mm.378966	NM_001024714	ENSMUSG00000068289	Cma2	Mcp10	chymase 2, mast cell	protein-coding	0.015000	0.507463	-36(AGCTATAAAAGC,-,0.00)
mm_48722.1	chr5	147326269	147326469	-	1	NA	NA	NA	-3929	NM_001039678	231903	Mm.291286	NM_001039678	ENSMUSG00000075543	Urad	EG231903|Prhoxnb	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase	protein-coding	0.020000	0.507463	-70(GCATTTAAAAGC,+,0.00),-70(GCATTTAAAAGC,-,0.00)
mm_102482.1	chr11	60176537	60176737	-	1	NA	NA	NA	23980	NR_105886	102465555		NR_105886	ENSMUSG00000098547	Mir6921	Gm27352|mmu-mir-6921	microRNA 6921	ncRNA	0.050000	0.616915	
mm_68613.1	chr7	116443324	116443524	-	1	NA	NA	NA	34	NM_011083	18704	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	protein-coding	0.105000	0.656716	
mm_132319.1	chr16	33793882	33794082	+	1	NA	NA	NA	-55	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.000000	0.492537	
mm_81482.1	chr9	109958503	109958703	+	1	NA	NA	NA	26829	NM_008633	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.005000	0.378109	
mm_93963.1	chr10	127288522	127288722	-	1	NA	NA	NA	396	NM_001347171	110962	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.055000	0.696517	
mm_88230.1	chr10	70837581	70837781	+	1	NA	NA	NA	-181718	NR_045292	319646	Mm.483039	NR_045291	ENSMUSG00000037747	D630013N20Rik	-	RIKEN cDNA D630013N20 gene	ncRNA	0.015000	0.482587	
mm_128296.1	chr15	37381519	37381719	-	1	NA	NA	NA	-43935	NM_029113	74892	Mm.107630	NM_029113	ENSMUSG00000022288	4930447A16Rik	-	RIKEN cDNA 4930447A16 gene	protein-coding	0.030000	0.412935	
mm_36441.1	chr4	82314096	82314296	-	1	NA	NA	NA	191583	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.005000	0.393035	
mm_8692.1	chr1	157256614	157256814	-	1	NA	NA	NA	-148034	NM_001305063	73435	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	0.010000	0.517413	
mm_44441.1	chr5	21645427	21645627	-	1	NA	NA	NA	78	NM_001199632	320118	Mm.442295	NM_177076	ENSMUSG00000048520	Fbxl13	4921539K22Rik	F-box and leucine-rich repeat protein 13	protein-coding	0.040000	0.547264	
mm_160432.1	chr8	92674194	92674394	+	1	NA	NA	NA	5	NM_001301137	64379	Mm.137247	NM_022428	ENSMUSG00000031738	Irx6	-	Iroquois related homeobox 6 (Drosophila)	protein-coding	0.065000	0.686567	
mm_22667.1	chr3	14872106	14872306	+	1	NA	NA	NA	8668	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.010000	0.333333	
mm_106112.1	chr11	116334121	116334321	-	1	NA	NA	NA	1133	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.070000	0.671642	
mm_37820.1	chr4	131873286	131873486	-	1	NA	NA	NA	-253	NM_020587	57317	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0.085000	0.606965	
mm_129368.1	chr15	77994801	77995001	-	1	NA	NA	NA	-24077	NM_018749	55944	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	0.010000	0.288557	
mm_137710.1	chr17	29099417	29099617	+	1	NA	NA	NA	5748	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.015000	0.378109	
mm_17617.1	chr2	30931947	30932147	-	1	NA	NA	NA	-20954	NM_133673	30934	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.005000	0.422886	
mm_162425.1	chr1	92730642	92730842	-	1	NA	NA	NA	-81901	NM_153114	260301	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.020000	0.552239	
mm_13972.1	chr2	121433893	121434093	+	1	NA	NA	NA	8608	NM_145973	269344	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	0.015000	0.472637	
mm_13411.1	chr2	104095746	104095946	+	1	NA	NA	NA	45	NM_001111060	12509	Mm.247265	NM_007652	ENSMUSG00000032679	Cd59a	AA987121|Cd59|protectin	CD59a antigen	protein-coding	0.010000	0.537313	
mm_48680.1	chr5	146221335	146221535	-	1	NA	NA	NA	22	NM_028774	74132	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	0.125000	0.681592	
mm_73028.1	chr8	94172683	94172883	+	1	NA	NA	NA	165	NM_008630	17750	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	0.105000	0.631841	-33(CGCTATAAAGGT,-,0.00)
mm_118381.1	chr13	117025452	117025652	-	1	NA	NA	NA	-36	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.075000	0.641791	
mm_149928.1	chr19	26749801	26750001	+	1	NA	NA	NA	1498	NM_026003	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.030000	0.437811	
mm_97243.1	chr11	75732842	75733042	+	1	NA	NA	NA	55	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.120000	0.666667	
mm_46184.1	chr5	97392260	97392460	-	1	NA	NA	NA	-30	NM_001033191	97243	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	0.080000	0.641791	
mm_102763.1	chr11	67922047	67922247	-	1	NA	NA	NA	6	NM_001291049	216835	Mm.158885	NM_173754	ENSMUSG00000020905	Usp43	-	ubiquitin specific peptidase 43	protein-coding	0.130000	0.791045	
mm_129159.1	chr15	76242551	76242751	-	1	NA	NA	NA	789	NM_001163576	671535	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0.030000	0.616915	
mm_72925.1	chr8	91106433	91106633	+	1	NA	NA	NA	27494	NM_001302337	14339	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	0.015000	0.492537	
mm_37743.1	chr4	129600491	129600691	-	1	NA	NA	NA	57	NM_018799	54709	Mm.250874	NM_018799	ENSMUSG00000028798	Eif3i	36kDa|D4Ertd632e|Eif3s2|Trip1	eukaryotic translation initiation factor 3, subunit I	protein-coding	0.090000	0.666667	
mm_4230.1	chr1	171369972	171370172	+	1	NA	NA	NA	-101	NM_027893	71740	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	0.015000	0.542289	45(TTCTCTTTAAGG,-,0.00)
mm_37444.1	chr4	123342806	123343006	-	1	NA	NA	NA	346	NM_001256019	12163	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0.110000	0.681592	
mm_13953.1	chr2	121303315	121303515	+	1	NA	NA	NA	7961	NM_001173506	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.040000	0.552239	
mm_29602.1	chr3	121171598	121171798	-	1	NA	NA	NA	-3	NM_025637	66568	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	0.100000	0.706468	
mm_100430.1	chr11	119457165	119457365	+	1	NA	NA	NA	-34082	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.040000	0.437811	
mm_147482.1	chr18	47248093	47248293	-	1	NA	NA	NA	120675	NM_018744	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.035000	0.527363	
mm_130866.1	chr15	102204106	102204306	-	1	NA	NA	NA	-365	NM_001289690	68744	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0.110000	0.701493	
mm_135757.1	chr16	56029593	56029793	-	1	NA	NA	NA	24	NM_001024622	76302	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	0.110000	0.706468	
mm_56320.1	chr6	92417957	92418157	-	1	NA	NA	NA	63335	NM_001134460	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.000000	0.288557	
mm_32481.1	chr4	107882971	107883171	+	1	NA	NA	NA	3316	NM_001282737	17149	Mm.808	NM_001282737	ENSMUSG00000028609	Magoh	Mago-m|Mos2	mago homolog, exon junction complex core component	protein-coding	0.015000	0.437811	-38(CCCTTTAGGCTC,+,0.00),3(GTGCATAAAAGT,-,0.00)
mm_35013.1	chr4	3574731	3574931	-	1	NA	NA	NA	-48	NM_054089	116940	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	0.110000	0.681592	
mm_15927.1	chr2	165067135	165067335	+	1	NA	NA	NA	11599	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.005000	0.477612	
mm_90687.1	chr10	128933679	128933879	+	1	NA	NA	NA	-34	NM_008398	16404	Mm.179747	NM_008398	ENSMUSG00000025348	Itga7	[a]7|alpha7	integrin alpha 7	protein-coding	0.055000	0.666667	
mm_23073.1	chr3	36453427	36453627	+	1	NA	NA	NA	21997	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.010000	0.462687	
mm_10861.1	chr2	25062718	25062918	+	1	NA	NA	NA	3007	NR_106124	102465989		NR_106124	ENSMUSG00000099320	Mir7664	Gm28015|mmu-mir-7664	microRNA 7664	ncRNA	0.010000	0.552239	
mm_3889.1	chr1	161175511	161175711	+	1	NA	NA	NA	-16297	NM_001195189	100502590	Mm.449990	NM_001195189		4930469G21Rik	-	RIKEN cDNA 4930469G21 gene	protein-coding	0.015000	0.467662	
mm_113358.1	chr13	32860864	32861064	+	1	NA	NA	NA	-9779	NM_025429	66222	Mm.20144	NM_025429	ENSMUSG00000044734	Serpinb1a	1190005M04Rik|AI325983|EI|EIA|ELANH2|LEI|M/NEI|MNEI|PI2	serine (or cysteine) peptidase inhibitor, clade B, member 1a	protein-coding	0.005000	0.447761	
mm_47136.1	chr5	120516410	120516610	-	1	NA	NA	NA	5318	NM_001177594	170756	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.010000	0.537313	
mm_124640.1	chr15	4375569	4375769	+	1	NA	NA	NA	178	NM_177355	239318	Mm.308996	NM_177355	ENSMUSG00000049148	Plcxd3	B130016O10Rik	phosphatidylinositol-specific phospholipase C, X domain containing 3	protein-coding	0.070000	0.601990	
mm_159087.1	chr2	31053265	31053465	-	1	NA	NA	NA	43135	NM_001177650	14269	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.045000	0.487562	
mm_138650.1	chr17	35867058	35867258	+	1	NA	NA	NA	543	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.025000	0.542289	
mm_134753.1	chr16	23170921	23171121	-	1	NA	NA	NA	24485	NM_009605	11450	Mm.3969	NM_009605	ENSMUSG00000022878	Adipoq	30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1	adiponectin, C1Q and collagen domain containing	protein-coding	0.015000	0.467662	
mm_160925.1	chr11	86730180	86730380	-	1	NA	NA	NA	27212	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.015000	0.427861	
mm_126708.1	chr15	85232467	85232667	+	1	NA	NA	NA	26559	NM_010180	14114	Mm.297992	NM_010180	ENSMUSG00000006369	Fbln1	-	fibulin 1	protein-coding	0.030000	0.452736	
mm_170934.1	chr2	4657025	4657225	+	1	NA	NA	NA	-5039	NM_026045	67229	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0.030000	0.507463	-18(GCCTATAAAAGC,-,0.00)
mm_40438.1	chr5	53590588	53590788	+	1	NA	NA	NA	202	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.100000	0.686567	
mm_41519.1	chr5	92392637	92392837	+	1	NA	NA	NA	4603	NM_001310665	109979	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0.040000	0.517413	
mm_145211.1	chr18	50030910	50031110	+	1	NA	NA	NA	-22272	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.005000	0.462687	
mm_147956.1	chr18	67057080	67057280	-	1	NA	NA	NA	-31118	NM_177137	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.005000	0.517413	
mm_31765.1	chr4	63409516	63409716	+	1	NA	NA	NA	-6171	NM_001045514	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.025000	0.482587	
mm_171689.1	chr4	64454969	64455169	+	1	NA	NA	NA	-408054	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding	0.060000	0.641791	
mm_82628.1	chr9	21926273	21926473	-	1	NA	NA	NA	915	NM_001253869	235043	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0.015000	0.547264	
mm_129248.1	chr15	76669575	76669775	-	1	NA	NA	NA	273	NM_007989	14106	Mm.42011	NM_007989	ENSMUSG00000033837	Foxh1	Fast1|Fast2|fast-1|fast-2	forkhead box H1	protein-coding	0.040000	0.587065	
mm_148228.1	chr18	80363545	80363745	-	1	NA	NA	NA	609	NM_001190373	240444	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.085000	0.701493	
mm_31069.1	chr4	41349214	41349414	+	1	NA	NA	NA	318	NM_023305	67123	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.080000	0.696517	
mm_140699.1	chr17	14204169	14204369	-	1	NA	NA	NA	-438	NM_172826	240025	Mm.79993	NM_172826	ENSMUSG00000048826	Dact2	2900084M21Rik|A630024E20|Dpr2|Frd2|dapper2	dishevelled-binding antagonist of beta-catenin 2	protein-coding	0.025000	0.557214	
mm_114765.1	chr13	88390478	88390678	+	1	NA	NA	NA	-430894	NM_010103	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.010000	0.507463	
mm_80492.1	chr9	78428968	78429168	+	1	NA	NA	NA	14169	NR_125721	214763	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0.005000	0.611940	
mm_80644.1	chr9	89449940	89450140	+	1	NA	NA	NA	172946	NM_153509	209743	Mm.242899	NM_153509	ENSMUSG00000039313	AF529169	DD1|Kiaa1024	cDNA sequence AF529169	protein-coding	0.020000	0.482587	
mm_46773.1	chr5	112342879	112343079	-	1	NA	NA	NA	61	NM_027323	70118	Mm.172947	NM_027323	ENSMUSG00000029346	Srrd	2810002G02Rik|Srr1	SRR1 domain containing	protein-coding	0.175000	0.791045	
mm_129511.1	chr15	79029049	79029249	-	1	NA	NA	NA	937	NM_008197	14958	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	0.010000	0.542289	
mm_151690.1	chr19	4333097	4333297	-	1	NA	NA	NA	-26975	NM_001290818	110355	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.010000	0.432836	
mm_123350.1	chr14	63142302	63142502	-	1	NA	NA	NA	19940	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.482587	
mm_34632.1	chr4	150613719	150613919	+	1	NA	NA	NA	38355	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.025000	0.572139	
mm_53899.1	chr6	3487382	3487582	-	1	NA	NA	NA	7016	NM_178899	101202	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0.000000	0.353234	
mm_141673.1	chr17	33909121	33909321	-	1	NA	NA	NA	-43	NR_045146	407803	Mm.250393	NR_045146	ENSMUSG00000092564	BC051226	-	cDNA sequence BC051226	ncRNA	0.075000	0.636816	
mm_26559.1	chr3	146499768	146499968	+	1	NA	NA	NA	32	NM_010318	14707	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	0.170000	0.781095	
mm_115991.1	chr13	24375867	24376067	-	1	NA	NA	NA	-39155	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.010000	0.462687	
mm_54723.1	chr6	40436028	40436228	-	1	NA	NA	NA	5	NM_175528	243780	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0.120000	0.776119	
mm_4788.1	chr1	184358234	184358434	+	1	NA	NA	NA	199357	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.015000	0.482587	
mm_62315.1	chr7	100276549	100276749	+	1	NA	NA	NA	-8871	NM_177161	320452	Mm.150294	NM_177161	ENSMUSG00000051048	P4ha3	D930031A02Rik	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III	protein-coding	0.005000	0.388060	
mm_131722.1	chr16	21568283	21568483	+	1	NA	NA	NA	126282	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.030000	0.452736	
mm_90754.1	chr10	5550033	5550233	-	1	NA	NA	NA	559	NM_153399	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.030000	0.497512	
mm_151515.1	chr19	58736970	58737170	+	1	NA	NA	NA	8183	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.015000	0.522388	
mm_28982.1	chr3	101276099	101276299	-	1	NA	NA	NA	11740	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.040000	0.572139	
mm_49063.1	chr6	5390409	5390609	+	1	NA	NA	NA	7123	NM_023048	65255	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0.020000	0.477612	
mm_172702.1	chr8	63933268	63933468	-	1	NA	NA	NA	18802	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding	0.020000	0.572139	
mm_168482.1	chr11	49051073	49051273	-	1	NA	NA	NA	69	NM_173434	245240	Mm.452996	NM_173434	ENSMUSG00000069892	9930111J21Rik2	9930111J21Rik|Irgb5|OTTMUSG00000005540	RIKEN cDNA 9930111J21 gene 2	protein-coding	0.000000	0.442786	9(CTCCCTTTAAGG,-,0.00),11(CCCTTTAAGGAC,+,0.00)
mm_90427.1	chr10	127501617	127501817	+	1	NA	NA	NA	0	NM_177707	237611	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0.010000	0.592040	
mm_46716.1	chr5	110448403	110448603	-	1	NA	NA	NA	0	NM_001317042	381668	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.105000	0.726368	
mm_47235.1	chr5	121450044	121450244	-	1	NA	NA	NA	2330	NM_026129	67397	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	0.015000	0.492537	-28(GCCTTTAGAGTC,+,0.00),17(TTCTCTTAAAAG,-,0.00),19(CTCTTAAAAGAC,+,0.00)
mm_7783.1	chr1	131279422	131279622	-	1	NA	NA	NA	41	NM_019777	56489	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.000000	0.532338	
mm_18721.1	chr2	72813575	72813775	-	1	NA	NA	NA	42	NR_102348	76218	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0.025000	0.502488	
mm_100955.1	chr11	6625714	6625914	-	1	NA	NA	NA	253	NM_001130457	21379	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	0.105000	0.666667	
mm_6217.1	chr1	66863157	66863357	-	1	NA	NA	NA	52	NM_007381	11363	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.155000	0.800995	
mm_138010.1	chr17	33843047	33843247	+	1	NA	NA	NA	56	NM_019421	54219	Mm.11175	NM_019421	ENSMUSG00000002308	Cd320	425O18-1|8D6|D17Ertd716e|NG29|TCblR|VLDL	CD320 antigen	protein-coding	0.090000	0.671642	
mm_42321.1	chr5	114897659	114897859	+	1	NA	NA	NA	825	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.030000	0.572139	
mm_10276.1	chr2	9882534	9882734	+	1	NA	NA	NA	1388	NR_024257	381347	Mm.441450	NR_024257		4930412O13Rik	ENSMUSG00000075535|Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.085000	0.636816	
mm_135783.1	chr16	56886054	56886254	-	1	NA	NA	NA	9	NM_019631	56277	Mm.262328	NM_019631	ENSMUSG00000022754	Tmem45a	C630002M10Rik|M32486|p19.5	transmembrane protein 45a	protein-coding	0.040000	0.626866	
mm_87568.1	chr10	56379074	56379274	+	1	NA	NA	NA	1874	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.050000	0.572139	
mm_135993.1	chr16	75187085	75187285	-	1	NA	NA	NA	398876	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.000000	0.343284	
mm_39858.1	chr5	30949990	30950190	+	1	NA	NA	NA	-16	NM_021304	57742	Mm.389615	NM_021304	ENSMUSG00000006638	Abhd1	LABH-1|LABH1	abhydrolase domain containing 1	protein-coding	0.060000	0.601990	
mm_69781.1	chr7	141072090	141072290	-	1	NA	NA	NA	-6039	NM_001162924	56460	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0.040000	0.636816	-33(GCTTTTAGGGAC,+,0.00)
mm_96793.1	chr11	69980657	69980857	+	1	NA	NA	NA	-411	NM_026017	67181	Mm.41678	NM_026017	ENSMUSG00000018559	Ctdnep1	2610507E10Rik|Dullard	CTD nuclear envelope phosphatase 1	protein-coding	0.030000	0.557214	
mm_11367.1	chr2	30982238	30982438	+	1	NA	NA	NA	59	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.085000	0.681592	
mm_45379.1	chr5	66084598	66084798	-	1	NA	NA	NA	13481	NM_139065	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.010000	0.447761	
mm_7197.1	chr1	92996961	92997161	-	1	NA	NA	NA	-9273	NM_177587	208760	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0.020000	0.532338	
mm_98367.1	chr11	93995962	93996162	+	1	NA	NA	NA	-29	NM_001199203	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.160000	0.840796	
mm_111596.1	chr12	101976172	101976372	-	1	NA	NA	NA	298	NM_016856	51786	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.090000	0.646766	
mm_136313.1	chr16	91728518	91728718	-	1	NA	NA	NA	184	NM_026994	66609	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	0.065000	0.616915	
mm_36926.1	chr4	108225284	108225484	-	1	NA	NA	NA	-7462	NM_001167936	230590	Mm.301798	NM_001167936	ENSMUSG00000034645	Zyg11a	BC022150	zyg-11 family member A, cell cycle regulator	protein-coding	0.000000	0.492537	
mm_7514.1	chr1	124025455	124025655	-	1	NA	NA	NA	20004	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.378109	
mm_27495.1	chr3	54915776	54915976	-	1	NA	NA	NA	11	NM_177854	329641	Mm.51187	NM_177854	ENSMUSG00000056306	Sertm1	6030405A18Rik	serine rich and transmembrane domain containing 1	protein-coding	0.115000	0.721393	
mm_27212.1	chr3	35932745	35932945	-	1	NA	NA	NA	121	NM_001205361	114893	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.170000	0.815920	
mm_31276.1	chr4	45798936	45799136	+	1	NA	NA	NA	14	NM_028270	72535	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	0.060000	0.606965	
mm_39460.1	chr5	17694556	17694756	+	1	NA	NA	NA	119840	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.010000	0.383085	
mm_148103.1	chr18	74064854	74065054	-	1	NA	NA	NA	-5	NM_172632	225724	Mm.254517	NM_172632	ENSMUSG00000024558	Mapk4	A330097D03Rik|Erk3|Prkm4|p63Mapk	mitogen-activated protein kinase 4	protein-coding	0.155000	0.840796	
mm_169042.1	chr13	14402058	14402258	+	1	NA	NA	NA	121068	NM_001081348	94253	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.040000	0.487562	-76(GAGTATAAAAGA,-,0.00)
mm_71220.1	chr8	40899022	40899222	+	1	NA	NA	NA	-27111	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.060000	0.587065	
mm_8341.1	chr1	150164854	150165054	-	1	NA	NA	NA	-6	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.050000	0.482587	
mm_98841.1	chr11	97539798	97539998	+	1	NA	NA	NA	35228	NM_018873	56013	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.010000	0.606965	
mm_91635.1	chr10	42264107	42264307	-	1	NA	NA	NA	12535	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.015000	0.368159	
mm_142456.1	chr17	45595439	45595639	-	1	NA	NA	NA	33	NM_001199116	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.105000	0.726368	
mm_112461.1	chr13	5867486	5867686	+	1	NA	NA	NA	6097	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.015000	0.457711	
mm_88537.1	chr10	78427271	78427471	+	1	NA	NA	NA	1701	NM_007793	13014	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	0.015000	0.497512	
mm_140910.1	chr17	24167334	24167534	-	1	NA	NA	NA	1961	NR_037854	100039636	Mm.30155	NR_037854		Atp6v0c-ps2	Atp6l-ps2|Gm15487	ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2	pseudo	0.015000	0.467662	48(CCTTTTAGGCAT,+,0.00)
mm_9696.1	chr1	178337620	178337820	-	1	NA	NA	NA	64	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.160000	0.711443	
mm_129885.1	chr15	83489480	83489680	-	1	NA	NA	NA	21327	NM_178869	319953	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0.065000	0.537313	
mm_5055.1	chr1	194976316	194976516	+	1	NA	NA	NA	543	NR_033564	320400	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.160000	0.731343	
mm_77863.1	chr9	5323700	5323900	+	1	NA	NA	NA	14951	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.010000	0.437811	
mm_39536.1	chr5	21381153	21381353	+	1	NA	NA	NA	8580	NM_008013	14190	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.000000	0.457711	
mm_61316.1	chr7	68133689	68133889	+	1	NA	NA	NA	130444	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.025000	0.542289	
mm_9073.1	chr1	168395461	168395661	-	1	NA	NA	NA	36608	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.000000	0.378109	
mm_154329.1	chrM	2954	3154	+	1	NA	NA	NA	NA	NA									0.010000	0.368159	
mm_149514.1	chr19	12427816	12428016	+	1	NA	NA	NA	11	NM_019540	56093	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.030000	0.462687	
mm_23848.1	chr3	83008332	83008532	+	1	NA	NA	NA	708	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.030000	0.447761	
mm_32488.1	chr4	107968312	107968512	+	1	NA	NA	NA	78	NM_146255	242607	Mm.192040	NM_146255	ENSMUSG00000008932	Slc1a7	A930031E15Rik|Eaat5	solute carrier family 1 (glutamate transporter), member 7	protein-coding	0.020000	0.557214	
mm_50282.1	chr6	47244328	47244528	+	1	NA	NA	NA	32	NM_025771	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.010000	0.532338	
mm_106384.1	chr11	118510566	118510766	-	1	NA	NA	NA	33706	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.015000	0.542289	
mm_50367.1	chr6	48675105	48675305	+	1	NA	NA	NA	-930	NM_174960	317758	Mm.116971	NM_174960	ENSMUSG00000051124	Gimap9	A630002K24|BB145400	GTPase, IMAP family member 9	protein-coding	0.015000	0.557214	-35(CACTATAAAAGG,-,0.00)
mm_91334.1	chr10	25536001	25536201	-	1	NA	NA	NA	171	NM_001195596	100504474	Mm.46323	NM_001195596	ENSMUSG00000096546	Smlr1	2010003K15Rik	small leucine-rich protein 1	protein-coding	0.025000	0.572139	
mm_81044.1	chr9	105470394	105470594	+	1	NA	NA	NA	24639	NM_175025	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.005000	0.398010	-41(TCCTATAAAGTC,+,0.00),82(AAGTCTAAAAGG,-,0.00)
mm_160410.1	chr8	72212728	72212928	-	1	NA	NA	NA	9	NM_001080812	234421	Mm.211247	NM_001080812	ENSMUSG00000074240	Cib3	C730014M21Rik|Gm1107|KIP3	calcium and integrin binding family member 3	protein-coding	0.005000	0.562189	
mm_22801.1	chr3	25330810	25331010	+	1	NA	NA	NA	-546904	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.005000	0.383085	
mm_27508.1	chr3	55784246	55784446	-	1	NA	NA	NA	1836	NM_010750	17116	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.020000	0.502488	
mm_119727.1	chr14	54074822	54075022	+	1	NA	NA	NA	179007	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.487562	
mm_139574.1	chr17	57062257	57062457	+	1	NA	NA	NA	80	NM_177638	224912	Mm.284447	NM_177638	ENSMUSG00000044279	Crb3	5730439B18|AU015179|AU041752	crumbs family member 3	protein-coding	0.070000	0.656716	
mm_134191.1	chr16	10983599	10983799	-	1	NA	NA	NA	9422	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.005000	0.398010	
mm_125049.1	chr15	25843146	25843346	+	1	NA	NA	NA	-52	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.140000	0.766169	
mm_123307.1	chr14	62292889	62293089	-	1	NA	NA	NA	-10	NM_173419	239133	Mm.127330	NM_173419	ENSMUSG00000048281	Dleu7	BC038059	deleted in lymphocytic leukemia, 7	protein-coding	0.075000	0.656716	
mm_88970.1	chr10	81409487	81409687	+	1	NA	NA	NA	6710	NR_106141	102465778		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.020000	0.582090	
mm_16485.1	chr2	180928923	180929123	+	1	NA	NA	NA	0	NM_001163247	329581	Mm.187879	NM_001163247	ENSMUSG00000038840	Birc7	E130019N06|KIAP|Livin|ML-IAP	baculoviral IAP repeat-containing 7 (livin)	protein-coding	0.020000	0.572139	
mm_916.1	chr1	55052670	55052870	+	1	NA	NA	NA	0	NM_026424	67876	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	0.095000	0.696517	
mm_152010.1	chr19	5952102	5952302	-	1	NA	NA	NA	12004	NM_001164057	18969	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0.035000	0.532338	
mm_145315.1	chr18	54422213	54422413	+	1	NA	NA	NA	18	NR_040338	77433	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.005000	0.537313	
mm_72060.1	chr8	71402691	71402891	+	1	NA	NA	NA	-3221	NM_001310502	234396	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	0.020000	0.611940	
mm_104139.1	chr11	86993594	86993794	-	1	NA	NA	NA	68	NM_001005341	77864	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee-like 2 (Drosophila)	protein-coding	0.120000	0.716418	-1(GGCTTTAAGAGC,-,0.00),0(GCTTTAAGAGCG,+,0.00)
mm_33894.1	chr4	136192814	136193014	+	1	NA	NA	NA	12132	NM_001305399	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.030000	0.597015	
mm_22499.1	chr3	7366520	7366720	+	1	NA	NA	NA	16	NM_008862	18767	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	0.090000	0.711443	
mm_93232.1	chr10	95323901	95324101	-	1	NA	NA	NA	136	NM_001330141	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.075000	0.507463	-10(TTTTTTAAACGG,+,0.00)
mm_83723.1	chr9	50768048	50768248	-	1	NA	NA	NA	4	NM_023483	68721	Mm.171374	NM_023483	ENSMUSG00000037971	1110032A03Rik	4930500N06Rik|c11orf1	RIKEN cDNA 1110032A03 gene	protein-coding	0.060000	0.562189	
mm_144126.1	chr18	4908870	4909070	+	1	NA	NA	NA	96484	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA	0.000000	0.492537	
mm_22629.1	chr3	14767315	14767515	+	1	NA	NA	NA	11045	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.005000	0.393035	
mm_44844.1	chr5	34187536	34187736	-	1	NA	NA	NA	74	NM_010753	17122	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.125000	0.736318	
mm_114083.1	chr13	54581048	54581248	+	1	NA	NA	NA	6135	NM_019968	56795	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0.020000	0.592040	
mm_113685.1	chr13	42866225	42866425	+	1	NA	NA	NA	78	NM_001302636	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.020000	0.572139	
mm_72651.1	chr8	84832176	84832376	+	1	NA	NA	NA	-6	NM_183358	102060	Mm.489649	NM_183358	ENSMUSG00000033751	Gadd45gip1	2310040G17Rik|AI425883|Crif1|MRP-L59|Plinp1	growth arrest and DNA-damage-inducible, gamma interacting protein 1	protein-coding	0.125000	0.731343	
mm_53406.1	chr6	131837367	131837567	+	1	NA	NA	NA	-147404	NM_207019	387346	Mm.377908	NM_207019	ENSMUSG00000063478	Tas2r114	T2R14|Tas2r14|mGR14|mt2r46	taste receptor, type 2, member 114	protein-coding	0.010000	0.432836	
mm_73397.1	chr8	105850738	105850938	+	1	NA	NA	NA	1170	NM_177150	320394	Mm.334775	NM_177150	ENSMUSG00000036672	Cenpt	G630055P03Rik	centromere protein T	protein-coding	0.015000	0.502488	
mm_103961.1	chr11	84167387	84167587	-	1	NA	NA	NA	-11	NM_001037932	628813	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690|OTTMUSG00000000997	predicted gene 11437	protein-coding	0.010000	0.462687	
mm_108380.1	chr12	80877288	80877488	+	1	NA	NA	NA	47059	NR_033786	67340	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.010000	0.621891	
mm_89638.1	chr10	96621101	96621301	+	1	NA	NA	NA	4200	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.015000	0.487562	
mm_59069.1	chr7	19507240	19507440	+	1	NA	NA	NA	991	NM_177692	232946	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.130000	0.731343	
mm_98092.1	chr11	86602274	86602474	+	1	NA	NA	NA	-18216	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.432836	
mm_123597.1	chr14	67715513	67715713	-	1	NA	NA	NA	-3	NM_001110162	108912	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	0.050000	0.542289	
mm_97220.1	chr11	75636687	75636887	+	1	NA	NA	NA	5767	NM_008916	19062	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.030000	0.522388	
mm_58894.1	chr7	17094909	17095109	+	1	NA	NA	NA	20969	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.025000	0.477612	
mm_99377.1	chr11	101986960	101987160	+	1	NA	NA	NA	4	NM_029287	75437	Mm.108632	NM_029287	ENSMUSG00000010841	1700006E09Rik	-	RIKEN cDNA 1700006E09 gene	protein-coding	0.010000	0.447761	
mm_130284.1	chr15	96996211	96996411	-	1	NA	NA	NA	59645	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.005000	0.338308	
mm_54178.1	chr6	23824697	23824897	-	1	NA	NA	NA	14624	NM_001252106	320405	Mm.259632	NM_153163	ENSMUSG00000017978	Cadps2	A230044C21Rik|Caps-2|Caps2|Cpd2	Ca2+-dependent activator protein for secretion 2	protein-coding	0.005000	0.368159	
mm_69070.1	chr7	126949817	126950017	-	1	NA	NA	NA	-336	NM_001039645	233879	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0.090000	0.691542	
mm_74375.1	chr8	128504852	128505052	+	1	NA	NA	NA	145711	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.000000	0.333333	
mm_111160.1	chr12	83520211	83520411	-	1	NA	NA	NA	-155	NM_030246	73828	Mm.38238	NM_030246	ENSMUSG00000021222	Dcaf4	1110018E21Rik|Wdr21	DDB1 and CUL4 associated factor 4	protein-coding	0.060000	0.577114	
mm_102490.1	chr11	60229673	60229873	-	1	NA	NA	NA	-9146	NM_001313979	20787	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP-1a|SREBP1|SREBP1c|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.005000	0.567164	
mm_26525.1	chr3	145987768	145987968	+	1	NA	NA	NA	-2	NM_001166064	214804	Mm.268854	NM_001166064	ENSMUSG00000036863	Syde2	C430017H16Rik	synapse defective 1, Rho GTPase, homolog 2 (C. elegans)	protein-coding	0.170000	0.771144	
mm_71702.1	chr8	61912961	61913161	+	1	NA	NA	NA	-10367	NM_001293772	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.015000	0.517413	
mm_33466.1	chr4	130811589	130811789	+	1	NA	NA	NA	19152	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.020000	0.562189	
mm_82811.1	chr9	30781268	30781468	-	1	NA	NA	NA	139582	NM_001329420	235130	Mm.65867	NM_001024139	ENSMUSG00000033453	Adamts15	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15	protein-coding	0.010000	0.527363	
mm_104388.1	chr11	94485209	94485409	-	1	NA	NA	NA	1	NM_144827	217116	Mm.156123	NM_144827	ENSMUSG00000020867	Spata20	Tisp78	spermatogenesis associated 20	protein-coding	0.020000	0.567164	
mm_56425.1	chr6	97309213	97309413	-	1	NA	NA	NA	-56533	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.020000	0.577114	
mm_117800.1	chr13	97206977	97207177	-	1	NA	NA	NA	-8720	NM_010422	15212	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.005000	0.482587	
mm_155984.1	chrX	106127183	106127383	+	1	NA	NA	NA	-15992	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.005000	0.348259	86(CTTTTTATACAG,+,0.00)
mm_91313.1	chr10	24924172	24924372	-	1	NA	NA	NA	3198	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.005000	0.497512	
mm_18788.1	chr2	73721854	73722054	-	1	NA	NA	NA	53392	NM_001166603	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	0.010000	0.432836	
mm_26499.1	chr3	145652332	145652532	+	1	NA	NA	NA	-2447	NM_010516	16007	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0.035000	0.597015	-97(GTCCATTTAAAG,-,0.00),-95(CCATTTAAAGCA,+,0.00)
mm_45798.1	chr5	87567293	87567493	-	1	NA	NA	NA	1613	NM_016771	53315	Mm.6824	NM_016771	ENSMUSG00000029273	Sult1d1	5033411P13Rik|AI987815|ST1d1|SULT-N|Sultn	sulfotransferase family 1D, member 1	protein-coding	0.005000	0.422886	77(CTCTTTAAAGAG,+,0.00),77(CTCTTTAAAGAG,-,0.00)
mm_151425.1	chr19	56851849	56852049	+	1	NA	NA	NA	21237	NM_001002241	83561	Mm.247541	NM_031387	ENSMUSG00000025081	Tdrd1	MTR-1	tudor domain containing 1	protein-coding	0.030000	0.502488	
mm_27660.1	chr3	65295799	65295999	-	1	NA	NA	NA	6786	NR_126080	102637797	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	0.000000	0.462687	
mm_2263.1	chr1	91145010	91145210	+	1	NA	NA	NA	7	NM_001033408	329207	Mm.295940	NM_001033408	ENSMUSG00000070732	Rbm44	Gm817	RNA binding motif protein 44	protein-coding	0.045000	0.606965	
mm_14100.1	chr2	125247157	125247357	+	1	NA	NA	NA	9	NM_001159646	110074	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0.115000	0.726368	
mm_883.1	chr1	52568400	52568600	+	1	NA	NA	NA	-62205	NR_024590	227094	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	0.005000	0.522388	
mm_4127.1	chr1	170214745	170214945	+	1	NA	NA	NA	548	NM_010633	16589	Mm.209150	NM_010633	ENSMUSG00000026667	Uhmk1	4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|OTTMUSG00000021542|P-CIP2	U2AF homology motif (UHM) kinase 1	protein-coding	0.040000	0.532338	
mm_169795.1	chr16	16049054	16049254	-	1	NA	NA	NA	97697	NM_146068	224008	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0.005000	0.383085	-31(GCCTTTTTAAGA,-,0.00)
mm_102066.1	chr11	52256974	52257174	-	1	NA	NA	NA	25079	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.010000	0.522388	
mm_152824.1	chr19	23136430	23136630	-	1	NA	NA	NA	-4696	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.025000	0.537313	3(GCACATAAAGGG,-,0.00)
mm_123406.1	chr14	63543820	63544020	-	1	NA	NA	NA	33	NM_177594	210376	Mm.441613	NM_177594	ENSMUSG00000035078	Mtmr9	9430075G12Rik|AA516943|AF073881|LIP-STYX|MTMR8|mMTMH3	myotubularin related protein 9	protein-coding	0.100000	0.701493	
mm_97486.1	chr11	78324638	78324838	+	1	NA	NA	NA	540	NM_009657	11676	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0.035000	0.537313	
mm_28546.1	chr3	92926145	92926345	-	1	NA	NA	NA	-15	NM_001039594	545548	Mm.387664	NM_001039594	ENSMUSG00000054325	Lce3a	EG545548	late cornified envelope 3A	protein-coding	0.005000	0.517413	
mm_120568.1	chr14	69029025	69029225	+	1	NA	NA	NA	-164	NM_009285	20855	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	0.020000	0.567164	-35(GGCTATAAAATC,-,0.00)
mm_17969.1	chr2	37585781	37585981	-	1	NA	NA	NA	61404	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding	0.000000	0.303483	
mm_103255.1	chr11	70982906	70983106	-	1	NA	NA	NA	20	NM_007573	12261	Mm.30049	NM_007573	ENSMUSG00000018446	C1qbp	AA407365|AA986492|D11Wsu182e|HABP1|P32|gC1qBP	complement component 1, q subcomponent binding protein	protein-coding	0.135000	0.756219	
mm_47448.1	chr5	123482539	123482739	-	1	NA	NA	NA	-538	NM_029594	76399	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.005000	0.557214	
mm_39399.1	chr5	14025517	14025717	+	1	NA	NA	NA	341	NM_011348	20349	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	0.065000	0.641791	
mm_156961.1	chrX	169989761	169989961	+	1	NA	NA	NA	-10944	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.040000	0.552239	
mm_37894.1	chr4	132567370	132567570	-	1	NA	NA	NA	3403	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.025000	0.542289	
mm_89955.1	chr10	111293561	111293761	+	1	NA	NA	NA	-5018	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.010000	0.338308	
mm_7024.1	chr1	87098449	87098649	-	1	NA	NA	NA	3057	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.025000	0.577114	
mm_25352.1	chr3	106790070	106790270	+	1	NA	NA	NA	-21	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.010000	0.457711	
mm_81061.1	chr9	106170789	106170989	+	1	NA	NA	NA	-40	NM_029896	77305	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	0.110000	0.716418	
mm_171572.1	chr4	147361294	147361494	+	1	NA	NA	NA	185528	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.020000	0.547264	
mm_49991.1	chr6	41047310	41047510	+	1	NA	NA	NA	-11901	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.482587	
mm_145593.1	chr18	60986006	60986206	+	1	NA	NA	NA	22552	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.040000	0.542289	
mm_36501.1	chr4	83417465	83417665	-	1	NA	NA	NA	-179	NM_029949	77634	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	0.070000	0.601990	
mm_47121.1	chr5	119691133	119691333	-	1	NA	NA	NA	-15	NR_040416	433944	Mm.491053	NR_040416	ENSMUSG00000086847	Tbx3os2	Gm16065|OTTMUSG00000029666	T-box 3, opposite strand 2	ncRNA	0.050000	0.567164	
mm_83051.1	chr9	37544947	37545147	-	1	NA	NA	NA	5792	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.070000	0.577114	
mm_166860.1	chr7	24442448	24442648	+	1	NA	NA	NA	3134	NM_199013	210145	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.020000	0.502488	
mm_145692.1	chr18	62137448	62137648	+	1	NA	NA	NA	42433	NM_007420	11555	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.015000	0.462687	
mm_144345.1	chr18	15150579	15150779	+	1	NA	NA	NA	767	NM_134112	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.035000	0.547264	-33(AGGCTTTAAAGG,-,0.00),-32(GGCTTTAAAGGC,-,0.00),-31(GCTTTAAAGGCG,+,0.00)
mm_100640.1	chr11	121830096	121830296	+	1	NA	NA	NA	-22	NM_029049	74675	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.060000	0.621891	
mm_400.1	chr1	34160055	34160255	+	1	NA	NA	NA	-175	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.025000	0.467662	-45(GCTTTAATGCTG,+,0.00),71(GCATATTTAAGG,-,0.00)
mm_145616.1	chr18	61105565	61105765	+	1	NA	NA	NA	93	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.000000	0.482587	
mm_64089.1	chr7	140967984	140968184	+	1	NA	NA	NA	8	NM_001112715	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding	0.015000	0.527363	-78(AGCTTGAAAAGG,-,0.00),3(GCCCCTAAAAAG,-,0.00),5(CCCTAAAAAGCA,+,0.00)
mm_166896.1	chr7	28379396	28379596	-	1	NA	NA	NA	-268	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.040000	0.616915	
mm_27672.1	chr3	65529270	65529470	-	1	NA	NA	NA	44	NR_027955	71004	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	0.140000	0.716418	
mm_25261.1	chr3	104782272	104782472	+	1	NA	NA	NA	1316	NM_027982	71887	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	0.020000	0.567164	
mm_46664.1	chr5	108693887	108694087	-	1	NA	NA	NA	-242	NM_001164259	116701	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0.090000	0.716418	
mm_107373.1	chr12	32859252	32859452	+	1	NA	NA	NA	35236	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.010000	0.487562	
mm_39742.1	chr5	29569248	29569448	+	1	NA	NA	NA	106	NM_133907	100763	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	0.160000	0.766169	
mm_64995.1	chr7	16923783	16923983	-	1	NA	NA	NA	149	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.140000	0.731343	
mm_92989.1	chr10	86701863	86702063	-	1	NA	NA	NA	3481	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.015000	0.417910	
mm_49331.1	chr6	21215378	21215578	+	1	NA	NA	NA	-631	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.080000	0.626866	
mm_156346.1	chrX	139179120	139179320	+	1	NA	NA	NA	-30824	NM_175541	245631	Mm.131001	NM_175541	ENSMUSG00000042515	Mum1l1	9430086K21Rik	melanoma associated antigen (mutated) 1-like 1	protein-coding	0.030000	0.462687	
mm_22732.1	chr3	19689919	19690119	+	1	NA	NA	NA	5377	NM_205769	12918	Mm.290689	NM_205769	ENSMUSG00000049796	Crh	CRF|Gm1347	corticotropin releasing hormone	protein-coding	0.000000	0.378109	57(TCCTCTAAAAAC,-,0.00)
mm_80411.1	chr9	77754434	77754634	+	1	NA	NA	NA	-1	NM_010295	14629	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.135000	0.736318	-34(GCCTATAAAATC,-,0.00)
mm_9016.1	chr1	166127101	166127301	-	1	NA	NA	NA	697	NM_001033344	240892	Mm.35315	NM_001033344	ENSMUSG00000026564	Dusp27	C130085G02Rik|Gm209	dual specificity phosphatase 27 (putative)	protein-coding	0.020000	0.542289	
mm_48054.1	chr5	136549497	136549697	-	1	NA	NA	NA	16384	NM_001291239	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.005000	0.402985	
mm_92985.1	chr10	86695628	86695828	-	1	NA	NA	NA	9716	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.030000	0.402985	
mm_35142.1	chr4	11393801	11394001	-	1	NA	NA	NA	-7118	NM_194055	207920	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	0.000000	0.477612	72(TGACTTAAAAGG,-,0.00)
mm_43144.1	chr5	125442017	125442217	+	1	NA	NA	NA	549	NM_029752	76809	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	0.085000	0.626866	
mm_90330.1	chr10	127078890	127079090	+	1	NA	NA	NA	83	NM_001033263	216439	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.080000	0.681592	
mm_140596.1	chr17	10286594	10286794	-	1	NA	NA	NA	32667	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.005000	0.308458	
mm_63661.1	chr7	129591747	129591947	+	1	NA	NA	NA	-16	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.060000	0.552239	
mm_12248.1	chr2	68883460	68883660	+	1	NA	NA	NA	22119	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.015000	0.487562	12(TCCTTTATAGCC,+,0.00)
mm_88062.1	chr10	67646846	67647046	+	1	NA	NA	NA	-97991	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.030000	0.477612	
mm_111574.1	chr12	101818813	101819013	-	1	NA	NA	NA	206	NM_011812	23876	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	0.055000	0.562189	
mm_114325.1	chr13	60608366	60608566	+	1	NA	NA	NA	6255	NM_134062	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.005000	0.412935	
mm_137876.1	chr17	31520051	31520251	+	1	NA	NA	NA	36	NM_001083891	78330	Mm.28349	NM_030087	ENSMUSG00000024038	Ndufv3	1500032D16Rik	NADH dehydrogenase (ubiquinone) flavoprotein 3	protein-coding	0.090000	0.641791	
mm_148966.1	chr19	7494460	7494660	+	1	NA	NA	NA	122	NM_146091	109168	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0.045000	0.626866	
mm_68045.1	chr7	101379791	101379991	-	1	NA	NA	NA	1769	NM_001040112	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.005000	0.592040	
mm_154512.1	chrM	12270	12470	-	1	NA	NA	NA	NA	NA									0.020000	0.393035	-16(GCCTATAAGTGG,-,0.00)
mm_157773.1	chrX	73739142	73739342	-	1	NA	NA	NA	-17861	NM_019587	140571	Mm.275600	NM_019587	ENSMUSG00000031385	Plxnb3	AI451018|Plxn6	plexin B3	protein-coding	0.015000	0.497512	-34(CCTTATAAAACC,+,0.00)
mm_106688.1	chr12	3365025	3365225	+	1	NA	NA	NA	-7	NM_008445	16570	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.070000	0.656716	
mm_82686.1	chr9	22259818	22260018	-	1	NA	NA	NA	-23	NM_181419	235048	Mm.292381	NM_181419	ENSMUSG00000062794	Zfp599	6720416P20	zinc finger protein 599	protein-coding	0.055000	0.587065	
mm_88365.1	chr10	75942924	75943124	+	1	NA	NA	NA	-2352	NM_001277132	333670	Mm.291320	NM_001037714	ENSMUSG00000050157	Gm867	Gm736	predicted gene 867	protein-coding	0.025000	0.462687	
mm_113255.1	chr13	28020148	28020348	+	1	NA	NA	NA	4025	NM_011165	19110	Mm.18607	NM_011165	ENSMUSG00000005891	Prl4a1	AA409771|Ghd23|PLP-A|Prlpa	prolactin family 4, subfamily a, member 1	protein-coding	0.005000	0.393035	
mm_168256.1	chr10	86705335	86705535	-	1	NA	NA	NA	9	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.095000	0.666667	
mm_26323.1	chr3	142530258	142530458	+	1	NA	NA	NA	22	NM_145545	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.025000	0.527363	
mm_73773.1	chr8	116504898	116505098	+	1	NA	NA	NA	-17	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.035000	0.542289	
mm_96488.1	chr11	67695220	67695420	+	1	NA	NA	NA	-6	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.030000	0.606965	
mm_16284.1	chr2	174076952	174077152	+	1	NA	NA	NA	1	NM_001102423	228960	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.030000	0.537313	
mm_115481.1	chr13	3537566	3537766	-	1	NA	NA	NA	-409	NM_008112	14569	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0.075000	0.681592	
mm_57017.1	chr6	121272614	121272814	-	1	NA	NA	NA	26808	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.015000	0.517413	
mm_132091.1	chr16	31141412	31141612	+	1	NA	NA	NA	59726	NM_030138	78618	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.005000	0.378109	
mm_37568.1	chr4	126241967	126242167	-	1	NA	NA	NA	14252	NM_144941	245877	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0.015000	0.616915	
mm_55593.1	chr6	71608963	71609163	-	1	NA	NA	NA	23623	NM_173001	104263	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0.005000	0.527363	
mm_3731.1	chr1	155098112	155098312	+	1	NA	NA	NA	1424	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.025000	0.502488	
mm_7577.1	chr1	124845988	124846188	-	1	NA	NA	NA	589639	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.015000	0.412935	-96(CCCTTTAAACTG,+,0.00)
mm_108506.1	chr12	83987565	83987765	+	1	NA	NA	NA	-196	NM_134188	171210	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	0.035000	0.467662	-37(GGCTTTTAAGAG,-,0.00),-36(GCTTTTAAGAGC,+,0.00),-35(CTTTTAAGAGCG,+,0.00)
mm_48666.1	chr5	145981226	145981426	-	1	NA	NA	NA	28291	NM_019792	56388	Mm.301900	NM_019792	ENSMUSG00000029630	Cyp3a25	AI327008	cytochrome P450, family 3, subfamily a, polypeptide 25	protein-coding	0.000000	0.323383	-5(AAGTCTAAAAGC,-,0.00)
mm_766.1	chr1	44118880	44119080	+	1	NA	NA	NA	-207	NM_023645	72050	Mm.281714	NM_023645	ENSMUSG00000026047	Kdelc1	1810049A15Rik|5730416C13Rik|EP58|Kdel1	KDEL (Lys-Asp-Glu-Leu) containing 1	protein-coding	0.035000	0.542289	
mm_7948.1	chr1	133915083	133915283	-	1	NA	NA	NA	6218	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.045000	0.601990	
mm_97615.1	chr11	78952759	78952959	+	1	NA	NA	NA	27568	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.030000	0.582090	
mm_169514.1	chr1	4857721	4857921	+	1	NA	NA	NA	127	NM_011541	21399	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.120000	0.706468	
mm_10960.1	chr2	25682689	25682889	+	1	NA	NA	NA	63	NM_178036	332578	Mm.246797	NM_178036	ENSMUSG00000047356	Lcn10	9230112J07Rik	lipocalin 10	protein-coding	0.015000	0.542289	
mm_117657.1	chr13	93192151	93192351	-	1	NA	NA	NA	32	NM_133905	100715	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0.090000	0.676617	
mm_142409.1	chr17	45488486	45488686	-	1	NA	NA	NA	-13648	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.040000	0.547264	
mm_52195.1	chr6	100450934	100451134	+	1	NA	NA	NA	-76366	NR_040525	73395	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0.020000	0.497512	
mm_33457.1	chr4	130792041	130792241	+	1	NA	NA	NA	-396	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.035000	0.592040	
mm_40489.1	chr5	57716069	57716269	+	1	NA	NA	NA	1750	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	0.065000	0.577114	
mm_92123.1	chr10	63429336	63429536	-	1	NA	NA	NA	-662	NM_177612	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.050000	0.422886	
mm_159579.1	chr4	118709143	118709343	+	1	NA	NA	NA	-166	NM_146853	258852	Mm.377720	NM_146853	ENSMUSG00000046790	Olfr1341	MOR258-1	olfactory receptor 1341	protein-coding	0.000000	0.442786	
mm_171695.1	chr4	67840880	67841080	+	1	NA	NA	NA	1013429	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.025000	0.472637	-19(TGGTATATAAGG,-,0.00)
mm_49156.1	chr6	13069653	13069853	+	1	NA	NA	NA	-6	NM_027992	71900	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	0.060000	0.611940	
mm_94128.1	chr10	128673811	128674011	-	1	NA	NA	NA	7	NM_173733	211389	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	0.100000	0.701493	
mm_20356.1	chr2	128127306	128127506	-	1	NA	NA	NA	-169	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.110000	0.706468	
mm_50044.1	chr6	41151101	41151301	+	1	NA	NA	NA	-115692	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.427861	
mm_50674.1	chr6	51544556	51544756	+	1	NA	NA	NA	133	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.005000	0.437811	
mm_79056.1	chr9	46229953	46230153	+	1	NA	NA	NA	1423	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.065000	0.601990	
mm_160895.1	chr11	73063601	73063801	+	1	NA	NA	NA	15834	NM_025818	66874	Mm.41903	NM_025818	ENSMUSG00000020783	Ncbp3	1200014J11Rik|C130061O14Rik|C78393	nuclear cap binding subunit 3	protein-coding	0.015000	0.442786	-50(CTCCTTAAAAGG,-,0.00),-49(TCCTTAAAAGGG,+,0.00),-48(CCTTAAAAGGGA,+,0.00)
mm_68024.1	chr7	100974557	100974757	-	1	NA	NA	NA	-10291	NM_183168	233571	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.050000	0.641791	
mm_83410.1	chr9	44802805	44803005	-	1	NA	NA	NA	46	NM_138951	192653	Mm.325487	NM_138951	ENSMUSG00000039438	Ttc36	-	tetratricopeptide repeat domain 36	protein-coding	0.010000	0.582090	
mm_5112.1	chr1	6214490	6214690	-	1	NA	NA	NA	-72	NM_009826	12421	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	0.105000	0.661692	
mm_113117.1	chr13	24501458	24501658	+	1	NA	NA	NA	-80631	NM_001286100	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.040000	0.482587	-59(AGCTTTAAAAAA,-,0.00)
mm_108215.1	chr12	77055048	77055248	+	1	NA	NA	NA	-92900	NM_001146176	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.010000	0.512438	
mm_73942.1	chr8	120101471	120101671	+	1	NA	NA	NA	-99	NM_133967	102193	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.095000	0.587065	68(CTCTTTTTAAGG,-,0.00),70(CTTTTTAAGGAT,+,0.00)
mm_130540.1	chr15	98953397	98953597	-	1	NA	NA	NA	4	NM_011653	22142	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	0.075000	0.611940	-87(CTGTATATAAGG,-,0.00)
mm_38089.1	chr4	134186955	134187155	-	1	NA	NA	NA	30	NM_144527	70012	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	0.135000	0.691542	
mm_75490.1	chr8	49430530	49430730	-	1	NA	NA	NA	-755940	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.000000	0.338308	
mm_169602.1	chr15	3583043	3583243	-	1	NA	NA	NA	209	NM_001048178	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.090000	0.726368	
mm_160122.1	chr7	27689334	27689534	+	1	NA	NA	NA	94	NM_001112731	112415	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	0.035000	0.542289	
mm_104665.1	chr11	97629600	97629800	-	1	NA	NA	NA	16	NM_175332	103551	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0.130000	0.741294	
mm_131116.1	chr16	5375002	5375202	+	1	NA	NA	NA	-119146	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.015000	0.512438	
mm_69115.1	chr7	127025748	127025948	-	1	NA	NA	NA	631	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.110000	0.691542	
mm_142264.1	chr17	39845649	39845849	-	1	NA	NA	NA	2752	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.155000	0.761194	
mm_103968.1	chr11	84513297	84513497	-	1	NA	NA	NA	104	NM_019816	56321	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0.095000	0.681592	
mm_72740.1	chr8	85085393	85085593	+	1	NA	NA	NA	2224	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.035000	0.557214	
mm_480.1	chr1	36714450	36714650	+	1	NA	NA	NA	12	NR_040290	71166	Mm.157049	NR_040290	ENSMUSG00000102416	4933424G06Rik	1700104I15Rik	RIKEN cDNA 4933424G06 gene	ncRNA	0.020000	0.532338	
mm_65416.1	chr7	25245609	25245809	-	1	NA	NA	NA	5049	NM_010155	13875	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.025000	0.512438	
mm_27245.1	chr3	36613253	36613453	-	1	NA	NA	NA	36	NM_027810	71492	Mm.286187	NM_027810	ENSMUSG00000037325	Bbs7	8430406N16Rik	Bardet-Biedl syndrome 7 (human)	protein-coding	0.095000	0.681592	
mm_92353.1	chr10	75909832	75910032	-	1	NA	NA	NA	11682	NM_011418	20587	Mm.279751	NM_011418	ENSMUSG00000000902	Smarcb1	AU020204|Baf47|Ini1|SNF5/INI1|Snf5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding	0.005000	0.358209	
mm_123565.1	chr14	66869106	66869306	-	1	NA	NA	NA	356	NM_001034881	432870	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	0.100000	0.651741	
mm_25238.1	chr3	103907959	103908159	+	1	NA	NA	NA	-6061	NM_172684	229675	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0.000000	0.383085	
mm_116946.1	chr13	56135333	56135533	-	1	NA	NA	NA	117	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.155000	0.766169	
mm_136361.1	chr16	92776779	92776979	-	1	NA	NA	NA	49195	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.010000	0.527363	
mm_137155.1	chr17	23726351	23726551	+	1	NA	NA	NA	115	NM_023058	268930	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	0.115000	0.736318	
mm_98127.1	chr11	87331544	87331744	+	1	NA	NA	NA	27350	NM_177167	320472	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	0.005000	0.402985	
mm_147351.1	chr18	43345050	43345250	-	1	NA	NA	NA	28122	NM_001136086	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.020000	0.482587	
mm_36217.1	chr4	62514099	62514299	-	1	NA	NA	NA	5710	NM_001276446	17025	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0.025000	0.606965	
mm_46951.1	chr5	114950738	114950938	-	1	NA	NA	NA	8636	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.035000	0.651741	
mm_56356.1	chr6	93769535	93769735	-	1	NA	NA	NA	143328	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.005000	0.358209	
mm_29859.1	chr3	130060603	130060803	-	1	NA	NA	NA	204	NM_207209	99683	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.165000	0.771144	
mm_13383.1	chr2	103957832	103958032	+	1	NA	NA	NA	-63	NM_001142337	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.010000	0.482587	
mm_24473.1	chr3	90669835	90670035	+	1	NA	NA	NA	864	NM_013650	20201	Mm.21567	NM_013650	ENSMUSG00000056054	S100a8	60B8Ag|AI323541|B8Ag|CFAg|CP-10|Caga|MRP8|p8	S100 calcium binding protein A8 (calgranulin A)	protein-coding	0.015000	0.427861	
mm_157065.1	chrX	8175823	8176023	-	1	NA	NA	NA	258	NM_001166437	209815	Mm.122963	NM_172478	ENSMUSG00000039201	Tbc1d25	6330576A08Rik|DXHXS7927e|Oatl1	TBC1 domain family, member 25	protein-coding	0.070000	0.646766	
mm_63113.1	chr7	122671113	122671313	+	1	NA	NA	NA	-531	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.070000	0.587065	
mm_99322.1	chr11	101442427	101442627	+	1	NA	NA	NA	282	NM_011289	19942	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	0.100000	0.671642	
mm_46811.1	chr5	113080472	113080672	-	1	NA	NA	NA	1012	NM_001159650	12962	Mm.378899	NM_021352	ENSMUSG00000029352	Crybb3	AI852419	crystallin, beta B3	protein-coding	0.015000	0.601990	
mm_141291.1	chr17	28068387	28068587	-	1	NA	NA	NA	12097	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.015000	0.502488	
mm_59559.1	chr7	28085102	28085302	+	1	NA	NA	NA	13966	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.020000	0.552239	
mm_97565.1	chr11	78936347	78936547	+	1	NA	NA	NA	11156	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.010000	0.522388	
mm_85662.1	chr9	107675093	107675293	-	1	NA	NA	NA	4399	NM_008140	14685	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.015000	0.582090	
mm_39243.1	chr5	3341435	3341635	+	1	NA	NA	NA	-2358	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.090000	0.696517	
mm_148213.1	chr18	80200533	80200733	-	1	NA	NA	NA	-14	NM_199197	68731	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	0.110000	0.696517	
mm_71123.1	chr8	36249530	36249730	+	1	NA	NA	NA	-114	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.050000	0.587065	
mm_172518.1	chr7	80803223	80803423	-	1	NA	NA	NA	8	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.105000	0.706468	
mm_32491.1	chr4	108165337	108165537	+	1	NA	NA	NA	0	NM_026728	52430	Mm.270783	NM_026728	ENSMUSG00000028601	Echdc2	1300017C12Rik|2610009M20Rik|D4Ertd765e	enoyl Coenzyme A hydratase domain containing 2	protein-coding	0.095000	0.641791	
mm_2314.1	chr1	91801400	91801600	+	1	NA	NA	NA	39	NM_007855	13345	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	0.095000	0.621891	
mm_55755.1	chr6	78378787	78378987	-	1	NA	NA	NA	-22	NM_013893	30053	Mm.33691	NM_013893	ENSMUSG00000068341	Reg3d	INGAP|Ingaprp	regenerating islet-derived 3 delta	protein-coding	0.005000	0.457711	11(TCGTTTTAAAAG,-,0.00),13(GTTTTAAAAGTG,+,0.00)
mm_97064.1	chr11	72796163	72796363	+	1	NA	NA	NA	37	NM_001045536	195018	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	0.110000	0.716418	
mm_107011.1	chr12	11882377	11882577	+	1	NA	NA	NA	422	NR_003964	627110	Mm.194735	NR_003964		Tubb2a-ps2	C79445	tubulin, beta 2a, pseudogene 2	pseudo	0.010000	0.477612	
mm_34995.1	chr4	156064245	156064445	+	1	NA	NA	NA	-4543	NR_132444	100415901	Mm.437006	NR_132444	ENSMUSG00000086549	Gm13648	OTTMUSG00000013217	predicted gene 13648	ncRNA	0.000000	0.606965	
mm_58588.1	chr7	5013280	5013480	+	1	NA	NA	NA	-138	NM_001110330	23877	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	0.015000	0.477612	-11(TCTTTTAAACAA,+,0.00)
mm_31256.1	chr4	45013434	45013634	+	1	NA	NA	NA	-1122	NM_173399	230119	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0.000000	0.388060	43(CCATATAAAAAC,-,0.00)
mm_121476.1	chr14	121035371	121035571	+	1	NA	NA	NA	-103	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.090000	0.761194	
mm_62297.1	chr7	100005976	100006176	+	1	NA	NA	NA	-328	NM_133709	69121	Mm.285295	NM_133709	ENSMUSG00000030732	Chrdl2	1810022C01Rik|Chl2	chordin-like 2	protein-coding	0.150000	0.761194	
mm_102026.1	chr11	51650768	51650968	-	1	NA	NA	NA	-86	NR_027958	97775	Mm.220299	NM_175289	ENSMUSG00000052563	D930048N14Rik	AI315703|R75254	RIKEN cDNA D930048N14 gene	ncRNA	0.140000	0.791045	
mm_131802.1	chr16	22899216	22899416	+	1	NA	NA	NA	-4930	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.010000	0.467662	
mm_1351.1	chr1	66321701	66321901	+	1	NA	NA	NA	77	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.020000	0.472637	
mm_93916.1	chr10	127067546	127067746	-	1	NA	NA	NA	2615	NM_025982	67125	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	0.015000	0.542289	
mm_43819.1	chr5	142960256	142960456	+	1	NA	NA	NA	1	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.095000	0.701493	
mm_114589.1	chr13	75754532	75754732	+	1	NA	NA	NA	47148	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.005000	0.467662	
mm_60580.1	chr7	44482530	44482730	+	1	NA	NA	NA	-1887	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.562189	
mm_111091.1	chr12	80436487	80436687	-	1	NA	NA	NA	14	NM_177267	320808	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	0.125000	0.726368	
mm_167809.1	chr9	123929071	123929271	+	1	NA	NA	NA	39521	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.015000	0.487562	
mm_133815.1	chr16	95709092	95709292	+	1	NA	NA	NA	6785	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.015000	0.417910	
mm_164907.1	chr18	70390691	70390891	+	1	NA	NA	NA	-81663	NM_029019	170461	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	0.010000	0.487562	
mm_135427.1	chr16	45382528	45382728	-	1	NA	NA	NA	26425	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.005000	0.358209	
mm_153333.1	chr19	38125150	38125350	-	1	NA	NA	NA	71	NM_001159487	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.015000	0.497512	
mm_131300.1	chr16	11406683	11406883	+	1	NA	NA	NA	1135	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.035000	0.502488	
mm_150805.1	chr19	44333325	44333525	+	1	NA	NA	NA	99	NM_183216	329065	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0.035000	0.562189	
mm_832.1	chr1	51476571	51476771	+	1	NA	NA	NA	1728	NM_028696	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.000000	0.388060	
mm_172828.1	chr9	19093622	19093822	+	1	NA	NA	NA	-27235	NM_146564	258557	Mm.377566	NM_146564	ENSMUSG00000059303	Olfr836	MOR152-3	olfactory receptor 836	protein-coding	0.025000	0.497512	
mm_99244.1	chr11	101079095	101079295	+	1	NA	NA	NA	784	NM_010475	15485	Mm.188939	NM_010475	ENSMUSG00000019301	Hsd17b1	17HSDB1|17beta-HSD|E2DH|Hsd17ba	hydroxysteroid (17-beta) dehydrogenase 1	protein-coding	0.045000	0.567164	
mm_24841.1	chr3	95661688	95661888	+	1	NA	NA	NA	3067	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.000000	0.348259	
mm_157858.1	chrX	75110520	75110720	-	1	NA	NA	NA	14766	NM_001030307	245474	Mm.291062	NM_001030307	ENSMUSG00000031403	Dkc1	BC068171	dyskeratosis congenita 1, dyskerin	protein-coding	0.005000	0.497512	
mm_4728.1	chr1	181352530	181352730	+	1	NA	NA	NA	2	NM_001160211	72978	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	0.130000	0.776119	
mm_150596.1	chr19	40705820	40706020	+	1	NA	NA	NA	46150	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.005000	0.363184	
mm_30931.1	chr4	32982924	32983124	+	1	NA	NA	NA	26	NM_027491	52187	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	0.045000	0.686567	
mm_66481.1	chr7	45016160	45016360	-	1	NA	NA	NA	-11	NM_001008422	233208	Mm.28298	NM_001008422	ENSMUSG00000038406	Scaf1	AI480556|SR-A1	SR-related CTD-associated factor 1	protein-coding	0.100000	0.621891	
mm_164085.1	chr15	5446400	5446600	-	1	NA	NA	NA	-49818	NR_045274	71432	Mm.291087	NR_045274		5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.015000	0.422886	
mm_134594.1	chr16	20548346	20548546	-	1	NA	NA	NA	110	NR_030670	100042948	Mm.406754	NR_030670		Gm15760	ENSMUSG00000075326|OTTMUSG00000026040	mitochondrial ribosomal protein S18B pseudogene	pseudo	0.105000	0.631841	
mm_144616.1	chr18	32837156	32837356	+	1	NA	NA	NA	31	NM_001110016	225348	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	0.095000	0.646766	
mm_150598.1	chr19	40736714	40736914	+	1	NA	NA	NA	77044	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.010000	0.442786	56(CATTTTATGGGC,+,0.00)
mm_31463.1	chr4	49059408	49059608	+	1	NA	NA	NA	46	NM_178756	272031	Mm.299460	NM_178756	ENSMUSG00000063446	Plppr1	E130309F12Rik|Lppr1|PRG-3|mKIAA4247	phospholipid phosphatase related 1	protein-coding	0.115000	0.671642	
mm_107622.1	chr12	51378190	51378390	+	1	NA	NA	NA	777	NM_029825	76983	Mm.216511	NM_029825	ENSMUSG00000020952	Scfd1	3110021P21Rik|RA410|STXBP1L2	Sec1 family domain containing 1	protein-coding	0.005000	0.258706	-70(CCATTTATAAAG,+,0.00)
mm_166228.1	chr5	65934615	65934815	+	1	NA	NA	NA	-32409	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.005000	0.407960	
mm_22837.1	chr3	27557303	27557503	+	1	NA	NA	NA	27592	NR_037275	100526525		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.000000	0.402985	
mm_67989.1	chr7	100856219	100856419	-	1	NA	NA	NA	7094	NM_177073	320100	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.005000	0.467662	
mm_107768.1	chr12	59130677	59130877	+	1	NA	NA	NA	-676	NM_001165253	338320	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.045000	0.527363	-54(GGCTCTAAAAAT,-,0.00)
mm_67305.1	chr7	79386754	79386954	-	1	NA	NA	NA	173	NM_020599	19771	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	0.015000	0.582090	
mm_113360.1	chr13	32956700	32956900	+	1	NA	NA	NA	-8713	NM_011454	20708	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	0.010000	0.432836	-78(TACCATAAAAGG,-,0.00)
mm_169685.1	chr15	73701419	73701619	-	1	NA	NA	NA	5986	NM_173365	239530	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	0.005000	0.502488	
mm_163111.1	chr11	70459505	70459705	+	1	NA	NA	NA	-17	NM_001029929	574428	Mm.472771	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.095000	0.671642	
mm_159182.1	chr2	111873680	111873880	-	1	NA	NA	NA	73	NM_146401	258396	Mm.377480	NM_146401	ENSMUSG00000074955	Olfr1305	MOR245-8	olfactory receptor 1305	protein-coding	0.000000	0.402985	
mm_144663.1	chr18	34316401	34316601	+	1	NA	NA	NA	-14644	NM_025527	66384	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	0.035000	0.447761	-81(GCTTATCTAGAC,+,0.00)
mm_78857.1	chr9	44392103	44392303	+	1	NA	NA	NA	-4724	NM_001293631	14385	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0.010000	0.462687	
mm_92054.1	chr10	62506203	62506403	-	1	NA	NA	NA	1452	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.030000	0.472637	
mm_97688.1	chr11	80137868	80138068	+	1	NA	NA	NA	4185	NM_183275	68550	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0.025000	0.472637	
mm_91059.1	chr10	18847967	18848167	-	1	NA	NA	NA	2996	NM_022032	64058	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	0.005000	0.587065	
mm_27068.1	chr3	27896275	27896475	-	1	NA	NA	NA	-7	NM_001164437	208613	Mm.59189	NM_001164437	ENSMUSG00000043164	Tmem212	E030011K20Rik|Gm564	transmembrane protein 212	protein-coding	0.010000	0.522388	-43(GTTTATAGAGGC,+,0.00)
mm_31312.1	chr4	46096934	46097134	+	1	NA	NA	NA	41441	NM_173033	272027	Mm.331588	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	0.025000	0.557214	
mm_45766.1	chr5	86916942	86917142	-	1	NA	NA	NA	9461	NM_152811	71773	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0.000000	0.383085	
mm_135787.1	chr16	57163623	57163823	-	1	NA	NA	NA	3609	NM_023175	52633	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.000000	0.348259	
mm_142997.1	chr17	56412667	56412867	-	1	NA	NA	NA	6142	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0.020000	0.497512	
mm_21168.1	chr2	154657880	154658080	-	1	NA	NA	NA	954	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.025000	0.512438	
mm_603.1	chr1	39900988	39901188	+	1	NA	NA	NA	175	NM_008696	26921	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.180000	0.840796	
mm_9115.1	chr1	170174826	170175026	-	1	NA	NA	NA	38	NM_001305046	107652	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.135000	0.776119	
mm_21830.1	chr2	165400277	165400477	-	1	NA	NA	NA	17	NM_029021	74614	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	0.015000	0.597015	
mm_5096.1	chr1	4857483	4857683	-	1	NA	NA	NA	-111	NM_001159750	21399	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.085000	0.606965	
mm_50458.1	chr6	48907642	48907842	+	1	NA	NA	NA	2756	NM_001161621	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.025000	0.577114	
mm_89359.1	chr10	88379048	88379248	+	1	NA	NA	NA	-264	NM_001004164	432486	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.140000	0.800995	
mm_69225.1	chr7	127615114	127615314	-	1	NA	NA	NA	-781	NM_177226	320683	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0.030000	0.636816	
mm_38842.1	chr4	149166595	149166795	-	1	NA	NA	NA	12	NM_001081274	110208	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.095000	0.636816	
mm_2514.1	chr1	106244884	106245084	+	1	NA	NA	NA	73115	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.000000	0.373134	53(GCCCTTAAAGAG,-,0.00),55(CCTTAAAGAGGA,+,0.00)
mm_50902.1	chr6	57581448	57581648	+	1	NA	NA	NA	556	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.005000	0.402985	
mm_145215.1	chr18	50051610	50051810	+	1	NA	NA	NA	-1572	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.035000	0.557214	
mm_34104.1	chr4	139131040	139131240	+	1	NA	NA	NA	-27	NM_001163006	433771	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	0.100000	0.616915	
mm_21185.1	chr2	155129949	155130149	-	1	NA	NA	NA	-3432	NM_001243712	16396	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	0.010000	0.393035	
mm_80270.1	chr9	72962078	72962278	+	1	NA	NA	NA	3393	NM_001163725	67685	Mm.31817	NM_026314	ENSMUSG00000089865	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0.040000	0.522388	
mm_109973.1	chr12	12938350	12938550	-	1	NA	NA	NA	3386	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.025000	0.452736	-36(TGGCTTAAAGGG,-,0.00),-34(GCTTAAAGGGAC,+,0.00)
mm_89803.1	chr10	102540171	102540371	+	1	NA	NA	NA	28049	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding	0.010000	0.467662	
mm_87903.1	chr10	62132990	62133190	+	1	NA	NA	NA	0	NM_009719	11925	Mm.57236	NM_009719	ENSMUSG00000044312	Neurog3	Atoh5|Math4B|bHLHa7|ngn3	neurogenin 3	protein-coding	0.060000	0.616915	
mm_29739.1	chr3	126922754	126922954	-	1	NA	NA	NA	20532	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.010000	0.393035	
mm_52034.1	chr6	96115160	96115360	+	1	NA	NA	NA	2106	NM_182808	320265	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.005000	0.358209	
mm_21385.1	chr2	157514260	157514460	-	1	NA	NA	NA	-45718	NM_001291129	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.015000	0.542289	
mm_77321.1	chr8	118906505	118906705	-	1	NA	NA	NA	-437933	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.010000	0.472637	
mm_64550.1	chr7	144422849	144423049	+	1	NA	NA	NA	20484	NR_037302	100499519		NR_037302	ENSMUSG00000093912	Mir3470b	mmu-mir-3470b	microRNA 3470b	ncRNA	0.015000	0.407960	-93(ACCTTTAAAAAA,-,0.00)
mm_3908.1	chr1	161896275	161896475	+	1	NA	NA	NA	-19714	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.030000	0.512438	
mm_138059.1	chr17	33928376	33928576	+	1	NA	NA	NA	-1418	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.030000	0.542289	
mm_17156.1	chr2	25224556	25224756	-	1	NA	NA	NA	46	NM_146116	227613	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	0.065000	0.577114	
mm_35463.1	chr4	40757757	40757957	-	1	NA	NA	NA	28	NM_021535	74255	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.135000	0.671642	-58(CCCTTTAGACCC,+,0.00)
mm_108471.1	chr12	83644306	83644506	+	1	NA	NA	NA	12172	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.010000	0.393035	-15(CCTCTTAGGGAC,+,0.00)
mm_65565.1	chr7	27174492	27174692	-	1	NA	NA	NA	1501	NR_037283	100526505		NR_037283	ENSMUSG00000093348	Mir3101	mir-3101|mmu-mir-3101	microRNA 3101	ncRNA	0.045000	0.666667	
mm_18792.1	chr2	73775260	73775460	-	1	NA	NA	NA	-14	NM_001113246	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	0.200000	0.800995	
mm_56860.1	chr6	118197638	118197838	-	1	NA	NA	NA	6	NM_009050	19713	Mm.57199	NM_009050	ENSMUSG00000030110	Ret	PTC|RET51|RET9|c-Ret	ret proto-oncogene	protein-coding	0.060000	0.562189	
mm_23214.1	chr3	43082790	43082990	+	1	NA	NA	NA	1340272	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.035000	0.522388	
mm_103850.1	chr11	83116491	83116691	-	1	NA	NA	NA	-254	NM_011407	20555	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0.010000	0.537313	
mm_53577.1	chr6	137410737	137410937	+	1	NA	NA	NA	116	NM_001164403	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.015000	0.487562	
mm_19331.1	chr2	90577777	90577977	-	1	NA	NA	NA	2770	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.015000	0.472637	
mm_33189.1	chr4	126202904	126203104	+	1	NA	NA	NA	-294	NM_146153	230753	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0.050000	0.626866	
mm_1505.1	chr1	72307332	72307532	+	1	NA	NA	NA	11	NM_009533	22596	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.050000	0.557214	
mm_96899.1	chr11	70451828	70452028	+	1	NA	NA	NA	-3	NM_025397	66172	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0.085000	0.621891	
mm_113306.1	chr13	30750993	30751193	+	1	NA	NA	NA	1860	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.020000	0.507463	
mm_973.1	chr1	58392876	58393076	+	1	NA	NA	NA	-160	NM_025824	66882	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.085000	0.706468	
mm_5697.1	chr1	43186992	43187192	-	1	NA	NA	NA	9669	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.005000	0.407960	
mm_143343.1	chr17	66594482	66594682	-	1	NA	NA	NA	40	NM_028998	74556	Mm.218634	NM_028998	ENSMUSG00000024105	Themis3	9130404H23Rik	thymocyte selection associated family member 3	protein-coding	0.020000	0.507463	
mm_44255.1	chr5	5478950	5479150	-	1	NA	NA	NA	93	NM_001200025	381716	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding	0.015000	0.567164	
mm_2420.1	chr1	95313542	95313742	+	1	NA	NA	NA	14	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.120000	0.681592	
mm_31618.1	chr4	59189108	59189308	+	1	NA	NA	NA	-342	NM_011673	22234	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.195000	0.820896	
mm_93033.1	chr10	88323041	88323241	-	1	NA	NA	NA	33934	NM_027878	71712	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.020000	0.388060	
mm_111536.1	chr12	100887750	100887950	-	1	NA	NA	NA	11674	NM_001177674	238377	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.010000	0.542289	
mm_90878.1	chr10	9675308	9675508	-	1	NA	NA	NA	-200	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0.115000	0.711443	
mm_21880.1	chr2	166154927	166155127	-	1	NA	NA	NA	258	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.170000	0.810945	
mm_124006.1	chr14	76050106	76050306	-	1	NA	NA	NA	-39341	NM_026816	68705	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	0.000000	0.432836	
mm_128242.1	chr15	36608659	36608859	-	1	NA	NA	NA	214	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.095000	0.587065	
mm_136549.1	chr16	97997120	97997320	-	1	NA	NA	NA	-127	NR_130962	245305	Mm.148033	NR_130962		B230307C23Rik	EG245305|OTTMUSG00000028475	RIKEN cDNA B230307C23 gene	ncRNA	0.025000	0.497512	
mm_133429.1	chr16	87553308	87553508	+	1	NA	NA	NA	78	NM_144854	224419	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	0.030000	0.597015	
mm_25073.1	chr3	99885332	99885532	+	1	NA	NA	NA	15	NM_028892	74362	Mm.55847	NM_028892	ENSMUSG00000027867	Spag17	4931427F14Rik|PF6|Spag17-ps	sperm associated antigen 17	protein-coding	0.060000	0.597015	
mm_94815.1	chr11	23152020	23152220	+	1	NA	NA	NA	-20	NR_131065	76993	Mm.59224	NR_131065	ENSMUSG00000086366	1700061J23Rik	-	RIKEN cDNA 1700061J23 gene	ncRNA	0.000000	0.517413	
mm_169133.1	chr13	59107855	59108055	-	1	NA	NA	NA	300258	NM_001025074	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.030000	0.582090	-16(CCTTATAAAAGT,+,0.00)
mm_140234.1	chr17	84108103	84108303	+	1	NA	NA	NA	29543	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.015000	0.527363	
mm_52427.1	chr6	113483248	113483448	+	1	NA	NA	NA	-221	NM_133930	171508	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811	cysteine-rich with EGF-like domains 1	protein-coding	0.065000	0.582090	
mm_147965.1	chr18	67134099	67134299	-	1	NA	NA	NA	639	NM_010307	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.055000	0.537313	
mm_83403.1	chr9	44743717	44743917	-	1	NA	NA	NA	-8619	NM_153537	102693	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.020000	0.452736	
mm_153076.1	chr19	32276850	32277050	-	1	NA	NA	NA	-65937	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.010000	0.512438	
mm_54395.1	chr6	31398650	31398850	-	1	NA	NA	NA	23	NR_040300	100503869	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845|OTTMUSG00000014733	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0.085000	0.706468	-40(TGCTCTTAAAGG,-,0.00),-39(GCTCTTAAAGGG,+,0.00),-39(GCTCTTAAAGGG,-,0.00),-37(TCTTAAAGGGGC,+,0.00)
mm_106829.1	chr12	7998520	7998720	+	1	NA	NA	NA	20943	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.437811	-79(ATCTATAAAAGA,-,0.00)
mm_24229.1	chr3	88949957	88950157	+	1	NA	NA	NA	225	NM_022994	65111	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0.130000	0.716418	
mm_24621.1	chr3	93520280	93520480	+	1	NA	NA	NA	-116	NM_016740	20195	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0.035000	0.597015	
mm_60009.1	chr7	30729634	30729834	+	1	NA	NA	NA	-200	NM_027215	69804	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	0.080000	0.567164	
mm_94727.1	chr11	20740516	20740716	+	1	NA	NA	NA	940	NM_001290545	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.040000	0.477612	
mm_86411.1	chr10	3366115	3366315	+	1	NA	NA	NA	65	NM_133485	76142	Mm.308126	NM_133485	ENSMUSG00000040653	Ppp1r14c	6330514J04Rik|KEPI	protein phosphatase 1, regulatory (inhibitor) subunit 14c	protein-coding	0.070000	0.587065	
mm_30653.1	chr4	8854101	8854301	+	1	NA	NA	NA	163795	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.065000	0.552239	-35(AGCTATAAAAGG,-,0.00)
mm_113307.1	chr13	30751618	30751818	+	1	NA	NA	NA	2485	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.030000	0.447761	
mm_145449.1	chr18	60212988	60213188	+	1	NA	NA	NA	1011	NM_001033767	240327	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.005000	0.427861	
mm_96148.1	chr11	61126655	61126855	+	1	NA	NA	NA	-14080	NM_021349	57916	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	0.025000	0.577114	
mm_34829.1	chr4	155221579	155221779	+	1	NA	NA	NA	856	NM_011385	20481	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.075000	0.636816	
mm_89976.1	chr10	111595777	111595977	+	1	NA	NA	NA	-1604	NR_045344	71321	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.015000	0.502488	
mm_90272.1	chr10	122725259	122725459	+	1	NA	NA	NA	46044	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.005000	0.348259	63(CTTTTTAGAGTT,+,0.00)
mm_109976.1	chr12	12939770	12939970	-	1	NA	NA	NA	1966	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.100000	0.721393	
mm_40787.1	chr5	67426693	67426893	+	1	NA	NA	NA	1006	NM_001164806	666938	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.095000	0.716418	
mm_14571.1	chr2	135336277	135336477	+	1	NA	NA	NA	-69453	NR_039540	100628568		NR_039540	ENSMUSG00000092830	Mir3963	mmu-mir-3963|mu-mir-3963	microRNA 3963	ncRNA	0.005000	0.472637	
mm_80183.1	chr9	72305773	72305973	+	1	NA	NA	NA	30985	NM_001311105	235469	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	0.000000	0.308458	
mm_11003.1	chr2	26475219	26475419	+	1	NA	NA	NA	-5200	NR_105962	102465602		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.020000	0.537313	
mm_116346.1	chr13	38634978	38635178	-	1	NA	NA	NA	31	NM_139063	17828	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	0.130000	0.691542	
mm_144896.1	chr18	37020018	37020218	+	1	NA	NA	NA	-112	NM_138663	192164	Mm.308500	NM_138663	ENSMUSG00000103310	Pcdha12	Cnr5|Crnr5|Pcdha13	protocadherin alpha 12	protein-coding	0.030000	0.407960	
mm_96791.1	chr11	69966804	69967004	+	1	NA	NA	NA	1483	NM_016887	53624	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	0.050000	0.651741	59(GCCTTAATGGTG,+,0.00)
mm_158329.1	chrX	133961626	133961826	-	1	NA	NA	NA	20086	NM_001290718	27359	Mm.38674	NM_013757	ENSMUSG00000031255	Sytl4	Gph|Slp4	synaptotagmin-like 4	protein-coding	0.030000	0.547264	
mm_142155.1	chr17	36032612	36032812	-	1	NA	NA	NA	-11	NM_010398	15040	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	0.030000	0.497512	
mm_24158.1	chr3	88483257	88483457	+	1	NA	NA	NA	9955	NM_019390	16905	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.035000	0.636816	
mm_75240.1	chr8	39631251	39631451	-	1	NA	NA	NA	11327	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.005000	0.402985	
mm_152486.1	chr19	11050323	11050523	-	1	NA	NA	NA	143	NR_102366	107350	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.005000	0.432836	
mm_93453.1	chr10	110098221	110098421	-	1	NA	NA	NA	-98102	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.000000	0.477612	4(CTCTATATAGCC,+,0.00)
mm_114173.1	chr13	55593057	55593257	+	1	NA	NA	NA	22	NM_026211	67511	Mm.45233	NM_026211	ENSMUSG00000058569	Tmed9	2400003B06Rik	transmembrane p24 trafficking protein 9	protein-coding	0.085000	0.671642	
mm_103755.1	chr11	80789764	80789964	-	1	NA	NA	NA	-9839	NM_177390	338367	Mm.151948	NM_177390	ENSMUSG00000035441	Myo1d	9930104H07Rik|AW544947|D11Ertd9e|myosin-1d	myosin ID	protein-coding	0.010000	0.567164	
mm_145371.1	chr18	56733139	56733339	+	1	NA	NA	NA	25426	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.020000	0.507463	
mm_15145.1	chr2	153986266	153986466	+	1	NA	NA	NA	11421	NM_001080811	545477	Mm.379973	NM_001080811	ENSMUSG00000078998	Bpifa6	EG545477|Gm5840|Splunc6	BPI fold containing family A, member 6	protein-coding	0.010000	0.507463	
mm_82989.1	chr9	36533760	36533960	-	1	NA	NA	NA	8103	NM_001033783	434396	Mm.118836	NM_001033783	ENSMUSG00000074448	Gm5615	EG434396|Pate-H|Pate9	predicted gene 5615	protein-coding	0.005000	0.442786	
mm_153072.1	chr19	32255002	32255202	-	1	NA	NA	NA	-44089	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.030000	0.502488	-23(TCTTTTCAAGCC,+,0.00)
mm_39265.1	chr5	3571584	3571784	+	1	NA	NA	NA	-32	NM_029843	77036	Mm.389069	NM_029843	ENSMUSG00000008307	1700109H08Rik	-	RIKEN cDNA 1700109H08 gene	protein-coding	0.000000	0.487562	
mm_47057.1	chr5	116381543	116381743	-	1	NA	NA	NA	41221	NM_030704	80888	Mm.21549	NM_030704	ENSMUSG00000041548	Hspb8	AU018630|AW413033|Cryac|D5Ucla4|E2IG1|H11|H11K|HSP20-like|HSP22	heat shock protein 8	protein-coding	0.025000	0.527363	
mm_103066.1	chr11	69837921	69838121	-	1	NA	NA	NA	-504	NM_026982	69186	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	0.045000	0.621891	
mm_142108.1	chr17	35835849	35836049	-	1	NA	NA	NA	2352	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.015000	0.587065	
mm_117705.1	chr13	95050468	95050668	-	1	NA	NA	NA	74224	NM_172590	218460	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.010000	0.427861	
mm_28832.1	chr3	96556154	96556354	-	1	NA	NA	NA	-1703	NM_001009935	56338	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.025000	0.388060	
mm_98854.1	chr11	97662981	97663181	+	1	NA	NA	NA	-331	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.115000	0.676617	
mm_148700.1	chr19	5742366	5742566	+	1	NA	NA	NA	1562	NM_008520	16998	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0.100000	0.676617	
mm_55855.1	chr6	83442611	83442811	-	1	NA	NA	NA	956	NR_028382	320775	Mm.434334	NR_028382	ENSMUSG00000051844	B230319C09Rik	-	RIKEN cDNA B230319C09 gene	ncRNA	0.010000	0.562189	
mm_147910.1	chr18	65416299	65416499	-	1	NA	NA	NA	-14598	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.472637	
mm_52075.1	chr6	97827191	97827391	+	1	NA	NA	NA	20233	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.010000	0.462687	-29(CCTCATTAAAGG,-,0.00)
mm_24183.1	chr3	88593002	88593202	+	1	NA	NA	NA	13431	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.005000	0.532338	
mm_44993.1	chr5	38159331	38159531	-	1	NA	NA	NA	36	NM_010942	18196	Mm.7414	NM_010942	ENSMUSG00000029126	Nsg1	Neep21|m234|p21	neuron specific gene family member 1	protein-coding	0.130000	0.736318	
mm_135406.1	chr16	44746189	44746389	-	1	NA	NA	NA	74	NM_001159329	66067	Mm.34520	NM_025332	ENSMUSG00000022668	Gtpbp8	0610037H22Rik	GTP-binding protein 8 (putative)	protein-coding	0.040000	0.547264	
mm_147295.1	chr18	39496493	39496693	-	1	NA	NA	NA	-9348	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.010000	0.393035	
mm_35750.1	chr4	45514020	45514220	-	1	NA	NA	NA	16708	NM_001033306	230126	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0.035000	0.547264	-33(TGTTATATAAGC,-,0.00)
mm_84846.1	chr9	78442761	78442961	-	1	NA	NA	NA	376	NR_125721	214763	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0.100000	0.731343	
mm_1395.1	chr1	67131621	67131821	+	1	NA	NA	NA	8694	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.507463	
mm_12207.1	chr2	66440821	66441021	+	1	NA	NA	NA	41	NR_033495	100038743	Mm.330264	NR_033495		Gm13629	OTTMUSG00000013098	predicted gene 13629	ncRNA	0.020000	0.452736	
mm_103851.1	chr11	83122167	83122367	-	1	NA	NA	NA	5422	NM_011407	20555	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0.010000	0.492537	
mm_102543.1	chr11	61267088	61267288	-	1	NA	NA	NA	-2	NM_007437	11671	Mm.398221	NM_007437	ENSMUSG00000010025	Aldh3a2	AI194803|Ahd-3|Ahd-3r|Ahd3|Ahd3-r|Aldh4|Aldh4-r|FALDH	aldehyde dehydrogenase family 3, subfamily A2	protein-coding	0.070000	0.641791	
mm_47460.1	chr5	123666589	123666789	-	1	NA	NA	NA	17672	NM_019765	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.005000	0.452736	
mm_52414.1	chr6	113392351	113392551	+	1	NA	NA	NA	-46	NM_133923	101100	Mm.388573	NM_133923	ENSMUSG00000030276	Ttll3	4833441J24Rik|AI450050	tubulin tyrosine ligase-like family, member 3	protein-coding	0.070000	0.681592	
mm_159851.1	chr5	137365390	137365590	+	1	NA	NA	NA	15381	NM_010144	13846	Mm.34533	NM_010144	ENSMUSG00000029710	Ephb4	AI042935|Htk|MDK2|Myk1|Tyro11	Eph receptor B4	protein-coding	0.015000	0.492537	
mm_21528.1	chr2	163644954	163645154	-	1	NA	NA	NA	89	NM_012032	26943	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	0.130000	0.716418	
mm_1381.1	chr1	66816113	66816313	+	1	NA	NA	NA	1382	NM_177645	68691	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.040000	0.472637	
mm_124819.1	chr15	9071332	9071532	+	1	NA	NA	NA	172	NM_001040395	68646	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.140000	0.776119	
mm_125557.1	chr15	58888892	58889092	+	1	NA	NA	NA	-237	NM_175226	75841	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0.160000	0.781095	
mm_140543.1	chr17	6827176	6827376	-	1	NA	NA	NA	-44496	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.015000	0.447761	-34(TACTTTAAAAGA,-,0.00),-33(ACTTTAAAAGAG,+,0.00),79(GGGCTTTAAGGG,-,0.00)
mm_132008.1	chr16	25824837	25825037	+	1	NA	NA	NA	23021	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.000000	0.303483	60(TTTTTAAAAGTC,+,0.00)
mm_26250.1	chr3	141631868	141632068	+	1	NA	NA	NA	166404	NM_001293561	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.015000	0.442786	
mm_3129.1	chr1	134962499	134962699	+	1	NA	NA	NA	34	NM_001278115	67196	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	0.090000	0.656716	
mm_14188.1	chr2	127080421	127080621	+	1	NA	NA	NA	9864	NM_026678	109778	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0.025000	0.492537	
mm_5549.1	chr1	38627496	38627696	-	1	NA	NA	NA	-352	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.210000	0.855721	
mm_145723.1	chr18	63926446	63926646	+	1	NA	NA	NA	217851	NM_001014981	104082	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0.030000	0.522388	
mm_168522.1	chr11	58214938	58215138	+	1	NA	NA	NA	61	NM_019440	54396	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	0.020000	0.611940	
mm_122563.1	chr14	49783261	49783461	-	1	NA	NA	NA	6	NM_026142	67419	Mm.318710	NM_026142	ENSMUSG00000036242	3632451O06Rik	AU067705	RIKEN cDNA 3632451O06 gene	protein-coding	0.045000	0.587065	
mm_151265.1	chr19	54045159	54045359	+	1	NA	NA	NA	77	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	0.105000	0.696517	-32(GGCTATAAAACC,-,0.00)
mm_137482.1	chr17	26933014	26933214	+	1	NA	NA	NA	-13	NM_001302397	21652	Mm.258953	NM_009343	ENSMUSG00000024193	Phf1	AW557215|D17Ertd455e|Pcl1|Phf2|Tctex3	PHD finger protein 1	protein-coding	0.085000	0.691542	
mm_24599.1	chr3	93445259	93445459	+	1	NA	NA	NA	3029	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.065000	0.582090	
mm_65185.1	chr7	19696390	19696590	-	1	NA	NA	NA	1908	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.035000	0.592040	
mm_86606.1	chr10	13553152	13553352	+	1	NA	NA	NA	-110	NM_001347361	56535	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	0.095000	0.651741	
mm_52542.1	chr6	115933844	115934044	+	1	NA	NA	NA	2017	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.050000	0.582090	
mm_37781.1	chr4	130177075	130177275	-	1	NA	NA	NA	-2053	NM_023476	94242	Mm.15801	NM_023476	ENSMUSG00000028776	Tinagl1	1110021J17Rik|AZ-1|AZ1|Arg1|Lcn7|TARP|Tinagl	tubulointerstitial nephritis antigen-like 1	protein-coding	0.010000	0.572139	
mm_92331.1	chr10	75789844	75790044	-	1	NA	NA	NA	-8522	NM_001346523	103140	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding	0.010000	0.512438	
mm_15386.1	chr2	156613552	156613752	+	1	NA	NA	NA	-45	NM_146128	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.165000	0.860697	
mm_33644.1	chr4	133011708	133011908	+	1	NA	NA	NA	302	NM_146155	230793	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.015000	0.572139	
mm_93663.1	chr10	117693178	117693378	-	1	NA	NA	NA	17480	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.020000	0.482587	
mm_158186.1	chrX	104348390	104348590	-	1	NA	NA	NA	65356	NM_009592	11306	Mm.426128	NM_009592	ENSMUSG00000031333	Abcb7	AA517758|AU019072|Abc7	ATP-binding cassette, sub-family B (MDR/TAP), member 7	protein-coding	0.070000	0.477612	-86(CCATTTAAAAGA,-,0.00)
mm_122796.1	chr14	54463960	54464160	-	1	NA	NA	NA	-87	NM_022993	65107	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	0.075000	0.597015	
mm_46157.1	chr5	96131127	96131327	-	1	NA	NA	NA	30320	NM_001285511	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.020000	0.412935	-99(CCTTTTCTAGCA,+,0.00),-26(CCTTTTAGGTAG,+,0.00)
mm_166233.1	chr5	67260618	67260818	+	1	NA	NA	NA	153	NM_030108	67878	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	0.105000	0.616915	5(GGCCCTTTAAGG,-,0.00),6(GCCCTTTAAGGC,-,0.00),7(CCCTTTAAGGCC,+,0.00)
mm_145564.1	chr18	60812347	60812547	+	1	NA	NA	NA	371	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.010000	0.547264	
mm_158658.1	chrX	157017451	157017651	-	1	NA	NA	NA	397735	NM_011077	18675	Mm.2529	NM_011077	ENSMUSG00000057457	Phex	Gy|HPDR|HPDR1|Hyp|PEX	phosphate regulating endopeptidase homolog, X-linked	protein-coding	0.045000	0.522388	
mm_74034.1	chr8	121829580	121829780	+	1	NA	NA	NA	-111	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.070000	0.582090	
mm_42128.1	chr5	110955980	110956180	+	1	NA	NA	NA	-48064	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.000000	0.363184	
mm_72444.1	chr8	83165374	83165574	+	1	NA	NA	NA	122	NM_027758	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.065000	0.666667	
mm_166734.1	chr6	122901488	122901688	+	1	NA	NA	NA	-20260	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.010000	0.517413	
mm_138390.1	chr17	35050188	35050388	+	1	NA	NA	NA	45	NM_033444	114584	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.060000	0.656716	
mm_52350.1	chr6	112273708	112273908	+	1	NA	NA	NA	50	NM_144799	30937	Mm.234441	NM_144799	ENSMUSG00000057604	Lmcd1	AW455500|AW553074|dyxin	LIM and cysteine-rich domains 1	protein-coding	0.060000	0.636816	-56(CTTTTTAGAGGG,+,0.00)
mm_160649.1	chr9	110857644	110857844	+	1	NA	NA	NA	-223	NM_146227	235631	Mm.102265	NM_146227	ENSMUSG00000048752	Prss50	79H19C|Tsp50	protease, serine 50	protein-coding	0.050000	0.592040	
mm_141027.1	chr17	25224597	25224797	-	1	NA	NA	NA	2115	NM_028789	74154	Mm.267353	NM_028789	ENSMUSG00000015127	Unkl	1300004G08Rik	unkempt family like zinc finger	protein-coding	0.000000	0.477612	-35(GTGCTTAAAAGC,-,0.00),-33(GCTTAAAAGCCC,+,0.00)
mm_85996.1	chr9	112217228	112217428	-	1	NA	NA	NA	23	NM_001177623	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.020000	0.587065	
mm_87264.1	chr10	41520432	41520632	+	1	NA	NA	NA	1032	NM_016898	53599	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.010000	0.303483	
mm_1907.1	chr1	85894493	85894693	+	1	NA	NA	NA	83	NM_022417	64294	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.090000	0.661692	
mm_86506.1	chr10	7589794	7589994	+	1	NA	NA	NA	94	NM_172784	237253	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	0.155000	0.731343	
mm_138209.1	chr17	34304972	34305172	+	1	NA	NA	NA	-795	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.015000	0.492537	
mm_141226.1	chr17	27324952	27325152	-	1	NA	NA	NA	-3333	NR_106075	102466818		NR_106075	ENSMUSG00000099237	Mir7216	Gm27555|mmu-mir-7216	microRNA 7216	ncRNA	0.030000	0.587065	
mm_87762.1	chr10	60291630	60291830	+	1	NA	NA	NA	7269	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.030000	0.621891	
mm_86070.1	chr9	114775373	114775573	-	1	NA	NA	NA	6520	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.010000	0.631841	
mm_43430.1	chr5	136059995	136060195	+	1	NA	NA	NA	2828	NM_027158	69665	Mm.75713	NM_027158	ENSMUSG00000006143	Upk3bl	2310043J07Rik	uroplakin 3B-like	protein-coding	0.050000	0.601990	
mm_146564.1	chr18	6490686	6490886	-	1	NA	NA	NA	71	NM_001276350	13831	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1 (Drosophila)	protein-coding	0.090000	0.666667	
mm_5718.1	chr1	44101556	44101756	-	1	NA	NA	NA	732	NM_029368	75623	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0.060000	0.582090	
mm_27685.1	chr3	65958422	65958622	-	1	NA	NA	NA	-297	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.095000	0.636816	-93(GCCTTTCTAGGC,+,0.00)
mm_118408.1	chr13	119488307	119488507	-	1	NA	NA	NA	-23	NR_027974	67304	Mm.474382	NM_026084	ENSMUSG00000074635	3110070M22Rik	-	RIKEN cDNA 3110070M22 gene	ncRNA	0.195000	0.820896	
mm_125977.1	chr15	76309772	76309972	+	1	NA	NA	NA	-2627	NM_153122	75475	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0.005000	0.527363	
mm_141356.1	chr17	28691064	28691264	-	1	NA	NA	NA	-178	NM_001168508	26416	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.110000	0.691542	
mm_129043.1	chr15	75134954	75135154	-	1	NA	NA	NA	-20207	NM_001310438	546644		NM_008531	ENSMUSG00000022582	Ly6g	Gr-1|Gr1|Ly-6G	lymphocyte antigen 6 complex, locus G	protein-coding	0.005000	0.522388	
mm_118325.1	chr13	113618434	113618634	-	1	NA	NA	NA	30	NM_130796	170625	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.120000	0.756219	
mm_152195.1	chr19	7483105	7483305	-	1	NA	NA	NA	86	NM_001271486	20168	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0.100000	0.641791	
mm_136922.1	chr17	13846057	13846257	+	1	NA	NA	NA	-84763	NM_022311	21646	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0.010000	0.482587	
mm_72004.1	chr8	70673676	70673876	+	1	NA	NA	NA	545	NM_015816	50783	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.025000	0.532338	
mm_58462.1	chr7	3366103	3366303	+	1	NA	NA	NA	-27839	NM_133190	81905	Mm.357990	NM_133190	ENSMUSG00000053395	Cacng8	-	calcium channel, voltage-dependent, gamma subunit 8	protein-coding	0.010000	0.547264	
mm_24261.1	chr3	89187344	89187544	+	1	NA	NA	NA	4219	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.070000	0.686567	
mm_56097.1	chr6	87458010	87458210	-	1	NA	NA	NA	29116	NM_009756	12154	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	-	bone morphogenetic protein 10	protein-coding	0.010000	0.472637	-79(AAGTATAAAAAG,-,0.00)
mm_38956.1	chr4	150652053	150652253	-	1	NA	NA	NA	21	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.095000	0.691542	
mm_56945.1	chr6	119963735	119963935	-	1	NA	NA	NA	61137	NM_001166381	19365	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.005000	0.303483	
mm_4663.1	chr1	180368003	180368203	+	1	NA	NA	NA	-37554	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.040000	0.577114	
mm_90624.1	chr10	128459115	128459315	+	1	NA	NA	NA	-21	NM_001114096	68094	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	0.180000	0.860697	
mm_141129.1	chr17	26201239	26201439	-	1	NA	NA	NA	11	NM_008113	14570	Mm.1383	NM_008113	ENSMUSG00000073433	Arhgdig	Gdi5|RIP2|Rho-GDI-3|Rho-GDI2	Rho GDP dissociation inhibitor (GDI) gamma	protein-coding	0.185000	0.820896	
mm_57526.1	chr6	126166644	126166844	-	1	NA	NA	NA	0	NM_001164034	18205	Mm.267570	NM_008742	ENSMUSG00000049107	Ntf3	AI316846|AI835689|HDNF|NGF-2|Nt3|Ntf-3	neurotrophin 3	protein-coding	0.035000	0.611940	
mm_27657.1	chr3	64757369	64757569	-	1	NA	NA	NA	-37867	NM_175674	319217	Mm.246646	NM_175674	ENSMUSG00000062200	Vmn2r7	4933425M15Rik	vomeronasal 2, receptor 7	protein-coding	0.005000	0.378109	
mm_115042.1	chr13	99641854	99642054	+	1	NA	NA	NA	-125352	NM_008634	17755	Mm.4173	NM_008634	ENSMUSG00000052727	Map1b	A230055D22|AI843217|LC1|MAP5|Mtap-5|Mtap1b|Mtap5	microtubule-associated protein 1B	protein-coding	0.040000	0.601990	
mm_136623.1	chr17	5538407	5538607	+	1	NA	NA	NA	45907	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.005000	0.422886	
mm_13006.1	chr2	90904951	90905151	+	1	NA	NA	NA	265	NM_025991	67136	Mm.330394	NM_025991	ENSMUSG00000005505	Kbtbd4	2510026C23Rik	kelch repeat and BTB (POZ) domain containing 4	protein-coding	0.065000	0.611940	
mm_101834.1	chr11	47988871	47989071	-	1	NA	NA	NA	85612	NR_105801	102466638		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	0.135000	0.771144	
mm_116885.1	chr13	55211262	55211462	-	1	NA	NA	NA	1580	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.100000	0.751244	
mm_123064.1	chr14	55672042	55672242	-	1	NA	NA	NA	-93	NM_177992	105446	Mm.390685	NM_177992	ENSMUSG00000002326	Gmpr2	1810008P16Rik|5730544D12Rik|AA959850|GMPR 2	guanosine monophosphate reductase 2	protein-coding	0.070000	0.601990	
mm_104307.1	chr11	90687489	90687689	-	1	NA	NA	NA	12	NM_028011	71943	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	0.080000	0.651741	
mm_135712.1	chr16	55523683	55523883	-	1	NA	NA	NA	29052	NR_039578	100628589		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.015000	0.368159	-69(CACTTTAAAAAA,-,0.00),-34(GGATATAAAAGG,-,0.00)
mm_32474.1	chr4	107802189	107802389	+	1	NA	NA	NA	30	NM_001080926	16975	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0.170000	0.830846	
mm_137157.1	chr17	23726410	23726610	+	1	NA	NA	NA	174	NM_023058	268930	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	0.115000	0.731343	
mm_98191.1	chr11	87793950	87794150	+	1	NA	NA	NA	266	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.010000	0.527363	
mm_164672.1	chr17	45571373	45571573	-	1	NA	NA	NA	1788	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.025000	0.517413	
mm_32971.1	chr4	120032792	120032992	+	1	NA	NA	NA	-128314	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.170000	0.810945	
mm_80171.1	chr9	71698821	71699021	+	1	NA	NA	NA	72681	NM_026599	68178	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	0.000000	0.432836	
mm_149158.1	chr19	9017490	9017690	+	1	NA	NA	NA	-314	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.025000	0.502488	
mm_82900.1	chr9	32718011	32718211	-	1	NA	NA	NA	22069	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.010000	0.552239	
mm_21346.1	chr2	157112427	157112627	-	1	NA	NA	NA	22695	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.030000	0.557214	
mm_81366.1	chr9	108785990	108786190	+	1	NA	NA	NA	-9904	NM_029634	76500	Mm.276336	NM_029634	ENSMUSG00000032599	Ip6k2	1500005N04Rik|AW050208|Ihpk2	inositol hexaphosphate kinase 2	protein-coding	0.000000	0.432836	10(CCTTATATATGT,+,0.00)
mm_69186.1	chr7	127260592	127260792	-	1	NA	NA	NA	-25	NM_023203	66422	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	0.120000	0.666667	
mm_21162.1	chr2	154603576	154603776	-	1	NA	NA	NA	-3	NM_021534	59038	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	0.045000	0.626866	
mm_169679.1	chr1	56782277	56782477	-	1	NA	NA	NA	-144926	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	0.030000	0.522388	
mm_11524.1	chr2	32621662	32621862	+	1	NA	NA	NA	4	NM_001198790	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.015000	0.532338	
mm_139058.1	chr17	46410791	46410991	+	1	NA	NA	NA	-18051	NM_053250	114570	Mm.25168	NM_053250	ENSMUSG00000023968	Crip3	TLP|TLP-A|TLP-B|Tlmp	cysteine-rich protein 3	protein-coding	0.010000	0.502488	
mm_60268.1	chr7	43841871	43842071	+	1	NA	NA	NA	-298	NM_026806	68668	Mm.458122	NM_026806	ENSMUSG00000074155	Klk5	1110030O19Rik	kallikrein related-peptidase 5	protein-coding	0.010000	0.616915	
mm_167008.1	chr7	52005685	52005885	-	1	NA	NA	NA	-71	NR_027704	75744	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	0.085000	0.721393	
mm_104757.1	chr11	98463800	98464000	-	1	NA	NA	NA	17066	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.025000	0.567164	
mm_108282.1	chr12	79069711	79069911	+	1	NA	NA	NA	19859	NM_029988	110417	Mm.268317	NM_029988	ENSMUSG00000021120	Pigh	2210416H01Rik|A930028P05Rik	phosphatidylinositol glycan anchor biosynthesis, class H	protein-coding	0.005000	0.527363	
mm_170441.1	chr18	80186110	80186310	+	1	NA	NA	NA	-29	NR_131039	105246506	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	0.005000	0.422886	
mm_60162.1	chr7	39588435	39588635	+	1	NA	NA	NA	70769	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.070000	0.542289	
mm_153737.1	chr19	44545754	44545954	-	1	NA	NA	NA	-6	NM_001033343	240667	Mm.329873	NM_001033343	ENSMUSG00000051984	Sec31b	Gm341|Sec31l2	Sec31 homolog B (S. cerevisiae)	protein-coding	0.080000	0.696517	
mm_132265.1	chr16	32821988	32822188	+	1	NA	NA	NA	-11642	NM_001256309	381043	Mm.303864	NM_001256309	ENSMUSG00000094430	Gm933	Gm1743	predicted gene 933	protein-coding	0.015000	0.532338	
mm_152900.1	chr19	25096363	25096563	-	1	NA	NA	NA	96934	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.025000	0.497512	
mm_4682.1	chr1	180579200	180579400	+	1	NA	NA	NA	-7901	NR_105869	102466761		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	0.025000	0.527363	
mm_110296.1	chr12	32208546	32208746	-	1	NA	NA	NA	3	NM_001146200	30955	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphoinositide-3-kinase, catalytic, gamma polypeptide	protein-coding	0.015000	0.398010	
mm_116949.1	chr13	56135542	56135742	-	1	NA	NA	NA	-92	NM_001159513	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.140000	0.786070	
mm_20017.1	chr2	119277910	119278110	-	1	NA	NA	NA	-6784	NM_145530	228543	Mm.120274	NM_145530	ENSMUSG00000034226	Rhov	A030005A06Rik|Arhv	ras homolog family member V	protein-coding	0.090000	0.631841	
mm_156791.1	chrX	162760302	162760502	+	1	NA	NA	NA	30	NM_009031	245688	Mm.270186	NM_009031	ENSMUSG00000031353	Rbbp7	AA409861|AI173248|AU019541|BB114024|mRbAp46	retinoblastoma binding protein 7	protein-coding	0.095000	0.671642	
mm_84276.1	chr9	62811351	62811551	-	1	NA	NA	NA	197	NM_010193	14155	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.110000	0.756219	
mm_69721.1	chr7	140356996	140357196	-	1	NA	NA	NA	-11109	NM_146955	18361	Mm.222844	NM_146955	ENSMUSG00000060112	Olfr60	IH6|MOR253-6	olfactory receptor 60	protein-coding	0.005000	0.417910	
mm_56683.1	chr6	113910378	113910578	-	1	NA	NA	NA	-18939	NM_001036684	11941	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.015000	0.606965	
mm_103074.1	chr11	69892013	69892213	-	1	NA	NA	NA	3426	NM_153788	216859	Mm.288671	NM_153788	ENSMUSG00000001588	Acap1	Centb1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein-coding	0.010000	0.497512	
mm_41636.1	chr5	97264647	97264847	+	1	NA	NA	NA	127583	NM_001033191	97243	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	0.025000	0.517413	
mm_157649.1	chrX	57326077	57326277	-	1	NA	NA	NA	12552	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	0.055000	0.691542	
mm_52774.1	chr6	121210679	121210879	+	1	NA	NA	NA	45	NM_017379	53857	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0.080000	0.706468	
mm_36585.1	chr4	88415994	88416194	-	1	NA	NA	NA	22832	NM_025760	66775	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.005000	0.383085	5(CTGCATAAAAGG,-,0.00)
mm_8518.1	chr1	154816843	154817043	-	1	NA	NA	NA	-91023	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.015000	0.492537	
mm_45218.1	chr5	53213179	53213379	-	1	NA	NA	NA	173	NM_172710	231238	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0.125000	0.781095	
mm_133192.1	chr16	72764973	72765173	+	1	NA	NA	NA	101924	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.010000	0.298507	
mm_137287.1	chr17	24736584	24736784	+	1	NA	NA	NA	91	NM_001346668	27361	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	0.065000	0.557214	89(TGGCATTAAAGC,-,0.00)
mm_44540.1	chr5	24540345	24540545	-	1	NA	NA	NA	12	NM_080444	117590	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	0.015000	0.537313	
mm_95773.1	chr11	54909370	54909570	+	1	NA	NA	NA	6616	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.025000	0.597015	
mm_44129.1	chr5	149678133	149678333	+	1	NA	NA	NA	-24	NM_001081204	381694	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	0.150000	0.776119	
mm_72621.1	chr8	84638504	84638704	+	1	NA	NA	NA	24248	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.030000	0.631841	
mm_134797.1	chr16	24216412	24216612	-	1	NA	NA	NA	-176838	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.010000	0.467662	
mm_128840.1	chr15	68392955	68393155	-	1	NA	NA	NA	-51766	NR_029718	387228		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0.010000	0.517413	
mm_45435.1	chr5	67099145	67099345	-	1	NA	NA	NA	-119	NM_008888	18935	Mm.62505	NM_008888	ENSMUSG00000012520	Phox2b	Dilp1|NBPhox|Pmx2b|Px2b	paired-like homeobox 2b	protein-coding	0.025000	0.467662	
mm_52994.1	chr6	123267045	123267245	+	1	NA	NA	NA	5038	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.025000	0.467662	
mm_60461.1	chr7	44477672	44477872	+	1	NA	NA	NA	-6745	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.422886	
mm_154366.1	chrM	8519	8719	+	1	NA	NA	NA	NA	NA									0.005000	0.368159	49(CCTTTTCAGCCC,+,0.00)
mm_164741.1	chr17	73636928	73637128	-	1	NA	NA	NA	73423	NM_027864	71685	Mm.271953	NM_027864	ENSMUSG00000024064	Galnt14	0610033M06Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14	protein-coding	0.020000	0.487562	
mm_3941.1	chr1	163779627	163779827	+	1	NA	NA	NA	144	NM_010629	16579	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	0.090000	0.701493	
mm_103513.1	chr11	76726810	76727010	-	1	NA	NA	NA	36645	NM_016810	53334	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	0.015000	0.373134	
mm_29956.1	chr3	133234738	133234938	-	1	NA	NA	NA	51	NM_029953	77669	Mm.98630	NM_029953	ENSMUSG00000040969	Arhgef38	9130221D24Rik|D630013G24Rik	Rho guanine nucleotide exchange factor (GEF) 38	protein-coding	0.015000	0.512438	
mm_104194.1	chr11	87875429	87875629	-	1	NA	NA	NA	7	NM_007946	13861	Mm.1315	NM_007946	ENSMUSG00000052234	Epx	EPO	eosinophil peroxidase	protein-coding	0.015000	0.517413	
mm_127610.1	chr15	102459397	102459597	+	1	NA	NA	NA	327	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.020000	0.432836	
mm_45943.1	chr5	90254691	90254891	-	1	NA	NA	NA	-30795	NM_001163456	231430	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	0.010000	0.293532	
mm_62744.1	chr7	111080084	111080284	+	1	NA	NA	NA	2846	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.025000	0.422886	
mm_60152.1	chr7	39449401	39449601	+	1	NA	NA	NA	-17	NM_001243021	233147	Mm.148946	NM_001243021	ENSMUSG00000030424	Zfp939	9430025M13Rik	zinc finger protein 939	protein-coding	0.045000	0.532338	
mm_66667.1	chr7	45717866	45718066	-	1	NA	NA	NA	36	NM_203280	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.085000	0.587065	
mm_29458.1	chr3	113564917	113565117	-	1	NA	NA	NA	9745	NM_007446	11722	Mm.439727	NM_007446	ENSMUSG00000074264	Amy1	Amy-1|Amy1a|C030014B17Rik	amylase 1, salivary	protein-coding	0.005000	0.412935	
mm_68345.1	chr7	106506462	106506662	-	1	NA	NA	NA	-65489	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.010000	0.427861	
mm_9660.1	chr1	177796383	177796583	-	1	NA	NA	NA	26	NM_007422	11566	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.105000	0.736318	
mm_157562.1	chrX	52165254	52165454	-	1	NA	NA	NA	-431	NM_008150	14735	Mm.1528	NM_008150	ENSMUSG00000031119	Gpc4	9530073D23Rik|AF311610|AI385680|AI661372|K-glypican	glypican 4	protein-coding	0.090000	0.731343	
mm_64964.1	chr7	16614755	16614955	-	1	NA	NA	NA	138	NM_172739	232906	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.155000	0.736318	
mm_3352.1	chr1	138163021	138163221	+	1	NA	NA	NA	12005	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.005000	0.412935	
mm_168577.1	chr1	171503066	171503266	-	1	NA	NA	NA	-312	NM_019484	56009	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	0.025000	0.378109	
mm_106240.1	chr11	117780497	117780697	-	1	NA	NA	NA	24	NM_181321	217353	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.055000	0.616915	
mm_155073.1	chrX	45090788	45090988	+	1	NA	NA	NA	-16	NM_026841	68800	Mm.336041	NM_026841	ENSMUSG00000037086	Prr32	1110059M19Rik	proline rich 32	protein-coding	0.005000	0.477612	
mm_138455.1	chr17	35136007	35136207	+	1	NA	NA	NA	393	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.045000	0.562189	
mm_87489.1	chr10	51494635	51494835	+	1	NA	NA	NA	3837	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.010000	0.447761	
mm_134457.1	chr16	18411825	18412025	-	1	NA	NA	NA	1569	NM_001111063	12846	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.020000	0.597015	
mm_147598.1	chr18	56708777	56708977	-	1	NA	NA	NA	1064	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.110000	0.691542	
mm_15153.1	chr2	154008165	154008365	+	1	NA	NA	NA	-11	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.010000	0.442786	
mm_124460.1	chr14	120774508	120774708	-	1	NA	NA	NA	-136586	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	0.010000	0.457711	-35(GTGCTTATAAGC,-,0.00),-33(GCTTATAAGCTG,+,0.00)
mm_65180.1	chr7	19696250	19696450	-	1	NA	NA	NA	2048	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.005000	0.527363	
mm_31597.1	chr4	57892903	57893103	+	1	NA	NA	NA	23261	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.015000	0.442786	
mm_132885.1	chr16	48818787	48818987	+	1	NA	NA	NA	2031	NM_023881	57263	Mm.21123	NM_023881	ENSMUSG00000022650	Retnlb	9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3	resistin like beta	protein-coding	0.015000	0.368159	
mm_79990.1	chr9	67031365	67031565	+	1	NA	NA	NA	12406	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.010000	0.472637	
mm_157058.1	chrX	8132311	8132511	-	1	NA	NA	NA	447	NM_001290783	73447	Mm.284162	NM_026137	ENSMUSG00000031166	Wdr13	1700060B08Rik|5730411P10Rik|DXHXS7467e|W51679|mMg21	WD repeat domain 13	protein-coding	0.050000	0.587065	
mm_96476.1	chr11	67652747	67652947	+	1	NA	NA	NA	-42479	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.020000	0.557214	
mm_34763.1	chr4	152477649	152477849	+	1	NA	NA	NA	-200	NM_010598	16498	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	0.100000	0.671642	
mm_99585.1	chr11	104295935	104296135	+	1	NA	NA	NA	64599	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.015000	0.457711	
mm_91826.1	chr10	56354999	56355199	-	1	NA	NA	NA	-22201	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.040000	0.437811	
mm_77309.1	chr8	117671441	117671641	-	1	NA	NA	NA	-26	NM_028725	74032	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	0.015000	0.447761	
mm_52786.1	chr6	121257105	121257305	+	1	NA	NA	NA	11299	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.000000	0.452736	
mm_160859.1	chr11	59228097	59228297	-	1	NA	NA	NA	-35	NM_001130408	11840	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	0.125000	0.746269	
mm_125196.1	chr15	32778847	32779047	+	1	NA	NA	NA	-141776	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0.075000	0.631841	
mm_125797.1	chr15	74835296	74835496	+	1	NA	NA	NA	6247	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.005000	0.447761	
mm_150502.1	chr19	39022014	39022214	+	1	NA	NA	NA	15095	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.005000	0.472637	
mm_45348.1	chr5	65858129	65858329	-	1	NA	NA	NA	-5340	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.020000	0.552239	
mm_44843.1	chr5	34186995	34187195	-	1	NA	NA	NA	615	NM_010753	17122	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.120000	0.681592	
mm_30128.1	chr3	141931779	141931979	-	1	NA	NA	NA	-291	NM_001277220	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.010000	0.323383	
mm_103563.1	chr11	77801133	77801333	-	1	NA	NA	NA	-65	NM_001291214	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.025000	0.646766	
mm_95281.1	chr11	45890516	45890716	+	1	NA	NA	NA	38652	NM_001045520	216705	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.050000	0.512438	
mm_119273.1	chr14	34170541	34170741	+	1	NA	NA	NA	-18222	NM_008919	19065	Mm.57059	NM_008919	ENSMUSG00000048337	Npy4r	NYYR-D|Ppyr1|Y4	neuropeptide Y receptor Y4	protein-coding	0.040000	0.497512	
mm_121646.1	chr14	9529260	9529460	-	1	NA	NA	NA	-354735	NR_030680	100042415	Mm.235938	NR_030680		Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.010000	0.373134	45(GCTTATATGGAG,+,0.00)
mm_154991.1	chrX	38320378	38320578	+	1	NA	NA	NA	4356	NM_133690	67821	Mm.60134	NM_133690	ENSMUSG00000016327	Atp1b4	1110020B02Rik	ATPase, (Na+)/K+ transporting, beta 4 polypeptide	protein-coding	0.005000	0.402985	
mm_103391.1	chr11	75422443	75422643	-	1	NA	NA	NA	80	NM_011340	20317	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.015000	0.552239	
mm_156682.1	chrX	159364826	159365026	+	1	NA	NA	NA	-7269	NM_025437	66235	Mm.294623	NM_025437	ENSMUSG00000067194	Eif1ax	1500010B24Rik|AI426898|Eif1ay	eukaryotic translation initiation factor 1A, X-linked	protein-coding	0.000000	0.393035	
mm_2364.1	chr1	93135150	93135350	+	1	NA	NA	NA	10	NM_001276710	11611	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	0.020000	0.542289	
mm_93856.1	chr10	122096958	122097158	-	1	NA	NA	NA	44	NM_153059	216395	Mm.236764	NM_153059	ENSMUSG00000034620	Tmem5	6330415D21Rik	transmembrane protein 5	protein-coding	0.135000	0.736318	
mm_154562.1	chrX	6399944	6400144	+	1	NA	NA	NA	12	NM_001040459	208431	Mm.23208	NM_001040459	ENSMUSG00000068270	Shroom4	D430043L16Rik|Gm724|Shrm4	shroom family member 4	protein-coding	0.105000	0.726368	
mm_132807.1	chr16	45158878	45159078	+	1	NA	NA	NA	149	NM_026402	67841	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	0.125000	0.756219	
mm_15616.1	chr2	160880638	160880838	+	1	NA	NA	NA	68	NM_022883	64899	Mm.292111	NM_022883	ENSMUSG00000027412	Lpin3	9130206L11Rik|AA438110|AV236139|mKIAA4023	lipin 3	protein-coding	0.030000	0.537313	
mm_94703.1	chr11	20227833	20228033	+	1	NA	NA	NA	21491	NM_172260	216543	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.005000	0.432836	66(GCTTTAATACCT,+,0.00)
mm_18612.1	chr2	68389386	68389586	-	1	NA	NA	NA	82495	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.015000	0.363184	-44(TCTTTTAGAGAA,+,0.00),-7(TTTTTTAAAGAC,+,0.00)
mm_25545.1	chr3	115887777	115887977	+	1	NA	NA	NA	182	NR_027894	68161	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.070000	0.597015	
mm_65898.1	chr7	30187301	30187501	-	1	NA	NA	NA	3230	NM_009944	12865	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	0.010000	0.572139	
mm_154705.1	chrX	8272189	8272389	+	1	NA	NA	NA	908	NM_172479	209837	Mm.6055	NM_172479	ENSMUSG00000031170	Slc38a5	C81234|E330031E14|JM24|SN2	solute carrier family 38, member 5	protein-coding	0.020000	0.537313	
mm_129359.1	chr15	77945783	77945983	-	1	NA	NA	NA	10839	NM_001168260	239554	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	0.005000	0.557214	
mm_128497.1	chr15	51978032	51978232	-	1	NA	NA	NA	13628	NM_009009	19357	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0.045000	0.487562	
mm_107137.1	chr12	21316322	21316522	+	1	NA	NA	NA	30	NM_026347	67732	Mm.335830	NM_026347	ENSMUSG00000062054	Iah1	1500019E20Rik|4833421E05Rik	isoamyl acetate-hydrolyzing esterase 1 homolog	protein-coding	0.110000	0.701493	
mm_139094.1	chr17	46890573	46890773	+	1	NA	NA	NA	52	NM_178385	72726	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0.100000	0.696517	
mm_68277.1	chr7	105599189	105599389	-	1	NA	NA	NA	827	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.020000	0.547264	
mm_69694.1	chr7	139998996	139999196	-	1	NA	NA	NA	-6534	NM_001291066	11501	Mm.15969	NM_007403	ENSMUSG00000025473	Adam8	ADAM 8|CD156|CD156a|E430039A18Rik|MS2	a disintegrin and metallopeptidase domain 8	protein-coding	0.005000	0.487562	64(GTCTTTAAGAGA,-,0.00)
mm_17842.1	chr2	34371859	34372059	-	1	NA	NA	NA	86	NM_001290576	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.155000	0.786070	
mm_107338.1	chr12	32378986	32379186	+	1	NA	NA	NA	297	NM_001162903	72123	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.125000	0.721393	
mm_142846.1	chr17	51796934	51797134	-	1	NA	NA	NA	15020	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.030000	0.457711	
mm_57106.1	chr6	122591395	122591595	-	1	NA	NA	NA	10949	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.010000	0.447761	
mm_76574.1	chr8	89006518	89006718	-	1	NA	NA	NA	-18117	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.110000	0.646766	
mm_120644.1	chr14	70528426	70528626	+	1	NA	NA	NA	-2295	NM_145219	213469	Mm.41708	NM_145219	ENSMUSG00000033595	Lgi3	AI841179|AW049851	leucine-rich repeat LGI family, member 3	protein-coding	0.015000	0.601990	
mm_159625.1	chr4	135965040	135965240	+	1	NA	NA	NA	-25	NM_178389	74246	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0.005000	0.472637	
mm_95644.1	chr11	53721816	53722016	+	1	NA	NA	NA	1122	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.010000	0.467662	
mm_149308.1	chr19	10740842	10741042	+	1	NA	NA	NA	-5	NR_027805	403202	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0.020000	0.582090	
mm_17311.1	chr2	26409017	26409217	-	1	NA	NA	NA	10	NM_001290437	64436	Mm.330070	NM_033134	ENSMUSG00000026925	Inpp5e	1200002L24Rik|72kDa|mKIAA0123	inositol polyphosphate-5-phosphatase E	protein-coding	0.095000	0.706468	
mm_81716.1	chr9	111351866	111352066	+	1	NA	NA	NA	40227	NM_001164659	320429	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	0.005000	0.507463	59(CCTTATAGAAGG,+,0.00)
mm_94070.1	chr10	128401146	128401346	-	1	NA	NA	NA	-22	NM_001136237	72002	Mm.22983	NM_028051	ENSMUSG00000039878	Slc39a5	1810013D05Rik|2010205A06Rik|Zip5	solute carrier family 39 (metal ion transporter), member 5	protein-coding	0.010000	0.597015	-50(GCCCCTTTAAGG,-,0.00),-48(CCCTTTAAGGTA,+,0.00)
mm_110664.1	chr12	59219653	59219853	-	1	NA	NA	NA	-270	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.140000	0.681592	
mm_142651.1	chr17	47595669	47595869	-	1	NA	NA	NA	2302	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.015000	0.537313	
mm_80211.1	chr9	72448607	72448807	+	1	NA	NA	NA	10178	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.040000	0.552239	
mm_145093.1	chr18	43207457	43207657	+	1	NA	NA	NA	-140	NM_178749	269019	Mm.150401	NM_178749	ENSMUSG00000039954	Stk32a	A930015B13Rik|YANK1	serine/threonine kinase 32A	protein-coding	0.085000	0.721393	
mm_47275.1	chr5	122002254	122002454	-	1	NA	NA	NA	45471	NM_007804	13048	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2|ENSMUSG00000072641	cut-like homeobox 2	protein-coding	0.060000	0.597015	
mm_138430.1	chr17	35077017	35077217	+	1	NA	NA	NA	175	NM_027366	70274	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	0.030000	0.597015	
mm_47081.1	chr5	117004632	117004832	-	1	NA	NA	NA	111261	NM_001122666	71954	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	0.020000	0.537313	
mm_58985.1	chr7	19080615	19080815	+	1	NA	NA	NA	-3134	NR_126095	13400	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	0.030000	0.636816	
mm_43689.1	chr5	138996144	138996344	+	1	NA	NA	NA	-1291	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.065000	0.656716	
mm_151271.1	chr19	55181789	55181989	+	1	NA	NA	NA	1004	NM_009348	21684	Mm.42139	NM_009348	ENSMUSG00000024979	Tectb	Tctnb	tectorin beta	protein-coding	0.015000	0.492537	
mm_98760.1	chr11	96567388	96567588	+	1	NA	NA	NA	102897	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.005000	0.432836	
mm_146717.1	chr18	15063542	15063742	-	1	NA	NA	NA	-60	NM_001142731	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.080000	0.616915	-42(TCCTTTAAGAGC,-,0.00),-41(CCTTTAAGAGCC,+,0.00)
mm_101461.1	chr11	30268081	30268281	-	1	NA	NA	NA	-48409	NM_175836	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.130000	0.786070	
mm_21476.1	chr2	161519765	161519965	-	1	NA	NA	NA	-410779	NR_126509	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0.005000	0.492537	
mm_7711.1	chr1	130462626	130462826	-	1	NA	NA	NA	18	NM_010016	13136	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0.075000	0.676617	
mm_77997.1	chr9	8900374	8900574	+	1	NA	NA	NA	641	NM_008829	18667	Mm.12798	NM_008829	ENSMUSG00000031870	Pgr	9930019P03Rik|BB114106|ENSMUSG00000074510|NR3C3|PR|PR-A|PR-B	progesterone receptor	protein-coding	0.040000	0.631841	
mm_150073.1	chr19	29386680	29386880	+	1	NA	NA	NA	19342	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.457711	
mm_85300.1	chr9	100506724	100506924	-	1	NA	NA	NA	32	NM_001324530	17973	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0.005000	0.393035	
mm_6654.1	chr1	79858535	79858735	-	1	NA	NA	NA	30	NM_009255	20720	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	0.160000	0.810945	
mm_158731.1	chrX	163958510	163958710	-	1	NA	NA	NA	56	NM_009453	22184	Mm.426178	NM_009453	ENSMUSG00000031370	Zrsr2	35kDa|5031411E02Rik|A230052C13Rik|C77286|U2af1-rs2|URP	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	protein-coding	0.080000	0.671642	
mm_131478.1	chr16	17137211	17137411	+	1	NA	NA	NA	-4928	NM_022324	64136	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	0.060000	0.477612	20(GCATTTAAAGAT,+,0.00)
mm_33997.1	chr4	137913413	137913613	+	1	NA	NA	NA	51276	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.105000	0.746269	
mm_75416.1	chr8	46617096	46617296	-	1	NA	NA	NA	4	NM_001001184	408022	Mm.217385	NM_001001184	ENSMUSG00000038225	Primpol	BC065112|Ccdc111	primase and polymerase (DNA-directed)	protein-coding	0.095000	0.691542	
mm_109306.1	chr12	109560637	109560837	+	1	NA	NA	NA	-2955	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.010000	0.467662	
mm_117673.1	chr13	93637625	93637825	-	1	NA	NA	NA	33	NM_016668	12116	Mm.329582	NM_016668	ENSMUSG00000074768	Bhmt	-	betaine-homocysteine methyltransferase	protein-coding	0.030000	0.537313	
mm_162861.1	chr10	93124129	93124329	+	1	NA	NA	NA	-36647	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.020000	0.432836	-25(TTGTTTAAAAGC,-,0.00)
mm_101252.1	chr11	20830931	20831131	-	1	NA	NA	NA	77	NM_173752	216551	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.165000	0.800995	
mm_69595.1	chr7	135716208	135716408	-	1	NA	NA	NA	71	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.150000	0.781095	
mm_98925.1	chr11	98348672	98348872	+	1	NA	NA	NA	366	NM_144828	19049	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0.075000	0.696517	
mm_66436.1	chr7	44815538	44815738	-	1	NA	NA	NA	20	NM_030693	107503	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	0.025000	0.507463	
mm_117665.1	chr13	93499659	93499859	-	1	NA	NA	NA	49	NM_021310	57748	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	0.140000	0.701493	
mm_2681.1	chr1	127306469	127306669	+	1	NA	NA	NA	101583	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.020000	0.487562	
mm_108058.1	chr12	73927318	73927518	+	1	NA	NA	NA	19551	NM_001313919	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.010000	0.298507	8(TTTTTTAAACAC,+,0.00)
mm_56713.1	chr6	115316974	115317174	-	1	NA	NA	NA	-43877	NM_001127330	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.025000	0.402985	
mm_166948.1	chr7	43952749	43952949	+	1	NA	NA	NA	2183	NM_008457	16624	Mm.435488	NM_008457	ENSMUSG00000063089	Klk1b8	Klk8|Nrpn|TADG14|kallikrein|mGK-8	kallikrein 1-related peptidase b8	protein-coding	0.010000	0.562189	
mm_107736.1	chr12	57576053	57576253	+	1	NA	NA	NA	12038	NM_001312644	70846	Mm.84118	NM_001037743	ENSMUSG00000046782	Ttc6	4921506M07Rik|EG639426|ENSMUSG00000046782|Gm69|Gm9813	tetratricopeptide repeat domain 6	protein-coding	0.135000	0.751244	
mm_18452.1	chr2	60963000	60963200	-	1	NA	NA	NA	104	NM_020296	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.085000	0.676617	
mm_97482.1	chr11	78324310	78324510	+	1	NA	NA	NA	212	NM_009657	11676	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0.035000	0.532338	
mm_73737.1	chr8	114133483	114133683	+	1	NA	NA	NA	9	NM_024437	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	0.060000	0.597015	
mm_152684.1	chr19	16059949	16060149	-	1	NA	NA	NA	-72782	NM_008139	14682	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.015000	0.467662	
mm_98398.1	chr11	94327951	94328151	+	1	NA	NA	NA	50	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.135000	0.766169	
mm_72590.1	chr8	84338720	84338920	+	1	NA	NA	NA	-68418	NM_026350	67736	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	0.050000	0.606965	
mm_135137.1	chr16	35847927	35848127	-	1	NA	NA	NA	23355	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.000000	0.427861	
mm_4890.1	chr1	188680400	188680600	+	1	NA	NA	NA	327340	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.005000	0.507463	
mm_130834.1	chr15	101848046	101848246	-	1	NA	NA	NA	2640	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.000000	0.457711	
mm_129802.1	chr15	82912067	82912267	-	1	NA	NA	NA	-33	NM_001114140	21411	Mm.252156	NM_013836	ENSMUSG00000041852	Tcf20	2810438H08Rik|SPBP|mKIAA0292	transcription factor 20	protein-coding	0.040000	0.611940	
mm_121786.1	chr14	19977015	19977215	-	1	NA	NA	NA	134	NM_001038637	14702	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.040000	0.691542	
mm_77265.1	chr8	115707714	115707914	-	1	NA	NA	NA	-920	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.045000	0.527363	-4(GGCTTTAAAATC,-,0.00)
mm_66228.1	chr7	35056412	35056612	-	1	NA	NA	NA	54	NM_009884	12611	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.175000	0.746269	
mm_149660.1	chr19	18730515	18730715	+	1	NA	NA	NA	17379	NM_177640	225995	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	0.020000	0.482587	
mm_13569.1	chr2	112281526	112281726	+	1	NA	NA	NA	-3062	NM_133648	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.000000	0.238806	
mm_20288.1	chr2	126925733	126925933	-	1	NA	NA	NA	7402	NM_023220	66552	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	0.005000	0.402985	-54(CCCTTTAGACTC,+,0.00)
mm_30966.1	chr4	33929488	33929688	+	1	NA	NA	NA	4956	NM_007726	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding	0.005000	0.407960	8(ACTTTAAGAGAC,+,0.00)
mm_146435.1	chr18	84932784	84932984	+	1	NA	NA	NA	-2141	NM_015798	50764	Mm.28369	NM_015798	ENSMUSG00000034391	Fbxo15	AU019763|Fbx15|ecat3	F-box protein 15	protein-coding	0.000000	0.303483	
mm_93349.1	chr10	100589137	100589337	-	1	NA	NA	NA	22	NM_175128	68281	Mm.268474	NM_175128	ENSMUSG00000046567	4930430F08Rik	4930571E09Rik|A730088G13Rik|AW551239|C430008C19Rik	RIKEN cDNA 4930430F08 gene	protein-coding	0.070000	0.606965	
mm_169430.1	chr14	53757246	53757446	+	1	NA	NA	NA	496583	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.577114	
mm_123898.1	chr14	73116951	73117151	-	1	NA	NA	NA	-25459	NM_001170694	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.010000	0.472637	
mm_141174.1	chr17	26716141	26716341	-	1	NA	NA	NA	591	NM_029870	77128	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	0.080000	0.681592	
mm_42120.1	chr5	110879767	110879967	+	1	NA	NA	NA	64	NM_001267622	209683	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	0.200000	0.815920	
mm_63346.1	chr7	126974267	126974467	+	1	NA	NA	NA	-1547	NM_026638	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.015000	0.442786	
mm_130783.1	chr15	101558311	101558511	-	1	NA	NA	NA	4539	NM_177717	239673	Mm.461267	NM_177717	ENSMUSG00000048699	Krt90	4732456N10Rik|Ket90	keratin 90	protein-coding	0.015000	0.567164	
mm_137285.1	chr17	24736549	24736749	+	1	NA	NA	NA	56	NM_001346668	27361	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	0.065000	0.577114	
mm_113328.1	chr13	30792524	30792724	+	1	NA	NA	NA	43391	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.025000	0.497512	
mm_90094.1	chr10	116962352	116962552	+	1	NA	NA	NA	-2288	NR_027847	103175	Mm.27138	NR_027846	ENSMUSG00000031294	D630029K05Rik	AI314111|AI875589	RIKEN cDNA D630029K05 gene	ncRNA	0.035000	0.482587	
mm_131669.1	chr16	20657818	20658018	+	1	NA	NA	NA	6266	NM_134101	21762	Mm.243234	NM_134101	ENSMUSG00000006998	Psmd2	9430095H01Rik|AA407121|TEG-190|Tex190	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	protein-coding	0.010000	0.422886	46(GACTTTTTAGGC,-,0.00)
mm_79457.1	chr9	56257398	56257598	+	1	NA	NA	NA	-96428	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.025000	0.398010	
mm_68615.1	chr7	116444496	116444696	-	1	NA	NA	NA	-1138	NM_011083	18704	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	protein-coding	0.005000	0.522388	
mm_2734.1	chr1	128244338	128244538	+	1	NA	NA	NA	257	NM_026390	67812	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0.120000	0.711443	
mm_22347.1	chr2	180909725	180909925	-	1	NA	NA	NA	11111	NM_173761	228994	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	0.025000	0.388060	
mm_168327.1	chr11	116357358	116357558	+	1	NA	NA	NA	-22104	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.020000	0.422886	
mm_108183.1	chr12	76533519	76533719	+	1	NA	NA	NA	59	NM_153804	263406	Mm.291854	NM_153804	ENSMUSG00000052609	Plekhg3	BC030417	pleckstrin homology domain containing, family G (with RhoGef domain) member 3	protein-coding	0.105000	0.761194	
mm_10654.1	chr2	20671745	20671945	+	1	NA	NA	NA	152332	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.015000	0.512438	
mm_23081.1	chr3	36616797	36616997	+	1	NA	NA	NA	-3508	NM_027810	71492	Mm.286187	NM_027810	ENSMUSG00000037325	Bbs7	8430406N16Rik	Bardet-Biedl syndrome 7 (human)	protein-coding	0.000000	0.298507	
mm_50771.1	chr6	53629651	53629851	+	1	NA	NA	NA	56377	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.005000	0.437811	
mm_39603.1	chr5	23850482	23850682	+	1	NA	NA	NA	-15	NR_045042	67194	Mm.423733	NR_045040	ENSMUSG00000097180	2700038G22Rik	-	RIKEN cDNA 2700038G22 gene	ncRNA	0.100000	0.676617	
mm_65639.1	chr7	27929354	27929554	-	1	NA	NA	NA	-24	NM_028538	73430	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	0.070000	0.592040	-59(CCCTTTAAGCGC,+,0.00)
mm_146153.1	chr18	75000394	75000594	+	1	NA	NA	NA	17	NM_001002239	319195	Mm.276337	NM_001002239	ENSMUSG00000062328	Rpl17	-	ribosomal protein L17	protein-coding	0.085000	0.582090	-97(CTTTCTAAAAGC,-,0.00)
mm_30082.1	chr3	138114050	138114250	-	1	NA	NA	NA	17227	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	0.030000	0.562189	
mm_42741.1	chr5	120678473	120678673	+	1	NA	NA	NA	29385	NM_001281999	19415	Mm.41209	NM_013832	ENSMUSG00000029602	Rasal1	MRASAL	RAS protein activator like 1 (GAP1 like)	protein-coding	0.005000	0.482587	
mm_107276.1	chr12	29534621	29534821	+	1	NA	NA	NA	-184	NM_001093776	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.020000	0.472637	
mm_22320.1	chr2	180589272	180589472	-	1	NA	NA	NA	-35	NM_031373	72075	Mm.250418	NM_031373	ENSMUSG00000049401	Ogfr	2010013E17Rik	opioid growth factor receptor	protein-coding	0.095000	0.711443	
mm_9966.1	chr1	191177270	191177470	-	1	NA	NA	NA	5963	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.030000	0.532338	
mm_41577.1	chr5	93172907	93173107	+	1	NA	NA	NA	33488	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.035000	0.547264	
mm_138020.1	chr17	33910226	33910426	+	1	NA	NA	NA	725	NM_001199733	13163	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0.030000	0.537313	
mm_143410.1	chr17	70829896	70830096	-	1	NA	NA	NA	16781	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.050000	0.477612	77(AGCTTTAAATGG,-,0.00)
mm_44208.1	chr5	4104355	4104555	-	1	NA	NA	NA	242	NM_020010	13121	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	0.095000	0.676617	
mm_426.1	chr1	34472636	34472836	+	1	NA	NA	NA	12990	NM_011206	19253	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.050000	0.651741	
mm_65448.1	chr7	25400180	25400380	-	1	NA	NA	NA	-4293	NM_010719	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.015000	0.552239	
mm_19021.1	chr2	76945289	76945489	-	1	NA	NA	NA	37158	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.010000	0.427861	
mm_70334.1	chr8	4493404	4493604	+	1	NA	NA	NA	99	NM_026058	67260	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0.065000	0.616915	
mm_2261.1	chr1	91144879	91145079	+	1	NA	NA	NA	-124	NM_001033408	329207	Mm.295940	NM_001033408	ENSMUSG00000070732	Rbm44	Gm817	RNA binding motif protein 44	protein-coding	0.065000	0.606965	-66(CCTTTTAAGTCT,+,0.00),-1(GCGCATTTAAGC,-,0.00),1(GCATTTAAGCCC,+,0.00)
mm_94962.1	chr11	30771749	30771949	+	1	NA	NA	NA	74	NM_134013	103554	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	0.155000	0.815920	
mm_88447.1	chr10	77548530	77548730	+	1	NA	NA	NA	18282	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.035000	0.527363	
mm_60875.1	chr7	46033736	46033936	+	1	NA	NA	NA	140	NM_153057	211548	Mm.274811	NM_153057	ENSMUSG00000030835	Nomo1	D7Ertd156e|Nomo|pM5	nodal modulator 1	protein-coding	0.140000	0.741294	
mm_39157.1	chr4	155491109	155491309	-	1	NA	NA	NA	-152	NM_001160017	14688	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.075000	0.666667	
mm_19846.1	chr2	113684919	113685119	-	1	NA	NA	NA	-71	NM_001287818	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.000000	0.442786	
mm_100867.1	chr11	5898467	5898667	-	1	NA	NA	NA	215	NM_022879	17898	Mm.46514	NM_022879	ENSMUSG00000020469	Myl7	MLC-2alpha|MLC2a|MYL2A|Mylc2a|RLC-A	myosin, light polypeptide 7, regulatory	protein-coding	0.020000	0.577114	
mm_151819.1	chr19	5510393	5510593	-	1	NA	NA	NA	-4	NM_001024560	225861	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0.030000	0.542289	
mm_16283.1	chr2	174076226	174076426	+	1	NA	NA	NA	-725	NM_172675	228960	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.065000	0.666667	
mm_79155.1	chr9	47789697	47789897	+	1	NA	NA	NA	28411	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.020000	0.517413	
mm_116130.1	chr13	28953212	28953412	-	1	NA	NA	NA	370	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.090000	0.592040	
mm_56981.1	chr6	120357365	120357565	-	1	NA	NA	NA	4	NM_026028	67200	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	0.045000	0.517413	
mm_160286.1	chr7	126377895	126378095	-	1	NA	NA	NA	-61	NR_045537	73658	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	0.025000	0.512438	
mm_113159.1	chr13	24802900	24803100	+	1	NA	NA	NA	1343	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.020000	0.398010	
mm_64224.1	chr7	141625318	141625518	+	1	NA	NA	NA	4717	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.000000	0.472637	
mm_8248.1	chr1	138619103	138619303	-	1	NA	NA	NA	554	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.055000	0.557214	
mm_88589.1	chr10	79711526	79711726	+	1	NA	NA	NA	-5008	NM_008226	15166	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	0.025000	0.587065	
mm_13040.1	chr2	91082275	91082475	+	1	NA	NA	NA	-12060	NM_001290765	68427	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.015000	0.562189	
mm_91213.1	chr10	21753825	21754025	-	1	NA	NA	NA	63080	NR_045843	432436	Mm.244553	NM_001004162		Gm5420	EG432436	predicted gene 5420	ncRNA	0.010000	0.457711	
mm_121661.1	chr14	12345150	12345350	-	1	NA	NA	NA	615	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	0.030000	0.577114	
mm_143264.1	chr17	65638848	65639048	-	1	NA	NA	NA	808	NM_153519	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.010000	0.432836	-49(GCTTTTCTGGTC,+,0.00)
mm_121579.1	chr14	123660062	123660262	+	1	NA	NA	NA	22	NM_145467	223272	Mm.383176	NM_145467	ENSMUSG00000032925	Itgbl1	B930011D01Rik	integrin, beta-like 1	protein-coding	0.030000	0.601990	
mm_147925.1	chr18	65938925	65939125	-	1	NA	NA	NA	64	NM_013833	19434	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	0.060000	0.606965	
mm_105820.1	chr11	112711374	112711574	-	1	NA	NA	NA	-118	NR_024085	217294	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA	0.015000	0.427861	81(CACTATAAAAGA,-,0.00)
mm_122349.1	chr14	38710339	38710539	-	1	NA	NA	NA	-187863	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA	0.000000	0.383085	
mm_116479.1	chr13	43560103	43560303	-	1	NA	NA	NA	-12	NM_001081059	76137	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0.160000	0.786070	
mm_150337.1	chr19	34575633	34575833	+	1	NA	NA	NA	-7796	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.015000	0.427861	
mm_82296.1	chr9	7836800	7837000	-	1	NA	NA	NA	-94	NM_001291503	11797	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.075000	0.592040	
mm_172264.1	chr6	75296946	75297146	-	1	NA	NA	NA	-1826025	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.015000	0.482587	
mm_34568.1	chr4	150033462	150033662	+	1	NA	NA	NA	-24539	NM_173371	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.070000	0.606965	
mm_35001.1	chr4	156203201	156203401	+	1	NA	NA	NA	17	NR_030671	100382	Mm.461024	NR_030671		AW011738	-	expressed sequence AW011738	ncRNA	0.115000	0.706468	-33(CCGTATTTAAGC,-,0.00)
mm_108534.1	chr12	84218495	84218695	+	1	NA	NA	NA	286	NM_001163501	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.085000	0.701493	
mm_165127.1	chr2	6570423	6570623	+	1	NA	NA	NA	151139	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.020000	0.442786	
mm_3078.1	chr1	134302886	134303086	+	1	NA	NA	NA	12982	NM_031189	17928	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	0.010000	0.452736	
mm_166262.1	chr5	87781676	87781876	+	1	NA	NA	NA	7326	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.000000	0.398010	
mm_46947.1	chr5	114921917	114922117	-	1	NA	NA	NA	-1223	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.030000	0.512438	
mm_76577.1	chr8	89006576	89006776	-	1	NA	NA	NA	-18059	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.115000	0.706468	
mm_139066.1	chr17	46556325	46556525	+	1	NA	NA	NA	-263	NM_020493	20807	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0.045000	0.577114	
mm_24865.1	chr3	95933910	95934110	+	1	NA	NA	NA	4753	NM_023210	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.035000	0.522388	
mm_32288.1	chr4	103114290	103114490	+	1	NA	NA	NA	0	NM_027696	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.105000	0.746269	
mm_129525.1	chr15	79258531	79258731	-	1	NA	NA	NA	-3883	NM_020516	57274	Mm.441697	NM_020516	ENSMUSG00000032988	Slc16a8	Mct3	solute carrier family 16 (monocarboxylic acid transporters), member 8	protein-coding	0.050000	0.661692	
mm_58148.1	chr6	142322872	142323072	-	1	NA	NA	NA	9	NM_130861	108096	Mm.206599	NM_130861	ENSMUSG00000063975	Slco1a5	Oatp-3|Oatp3|Slc21a7	solute carrier organic anion transporter family, member 1a5	protein-coding	0.020000	0.512438	
mm_14288.1	chr2	128818223	128818423	+	1	NA	NA	NA	20	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.115000	0.756219	
mm_78137.1	chr9	20888207	20888407	+	1	NA	NA	NA	132	NM_145610	235036	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog (Drosophila)	protein-coding	0.110000	0.701493	
mm_45753.1	chr5	86783074	86783274	-	1	NA	NA	NA	-21092	NM_001347375	231386	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.025000	0.532338	
mm_50734.1	chr6	52713926	52714126	+	1	NA	NA	NA	297	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.110000	0.691542	
mm_110123.1	chr12	26444059	26444259	-	1	NA	NA	NA	12293	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.010000	0.378109	
mm_29030.1	chr3	102166888	102167088	-	1	NA	NA	NA	37705	NM_177545	229658	Mm.118004	NM_177545	ENSMUSG00000027860	Vangl1	Kitenin|Lpp2|Stb2|Stbm	vang-like 1 (van gogh, Drosophila)	protein-coding	0.020000	0.467662	
mm_47698.1	chr5	129787066	129787266	-	1	NA	NA	NA	87	NM_133900	100678	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	0.095000	0.616915	13(CGCTTTTAAGAG,-,0.00)
mm_124244.1	chr14	101594359	101594559	-	1	NA	NA	NA	14732	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.010000	0.383085	
mm_62887.1	chr7	115020230	115020430	+	1	NA	NA	NA	69056	NR_040319	101786	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0.010000	0.398010	
mm_32022.1	chr4	95075672	95075872	+	1	NA	NA	NA	-23550	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.055000	0.597015	
mm_131397.1	chr16	14352766	14352966	+	1	NA	NA	NA	-8692	NM_008576	17250	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.005000	0.487562	
mm_66243.1	chr7	35555222	35555422	-	1	NA	NA	NA	606	NM_033080	110959	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	0.110000	0.686567	
mm_45006.1	chr5	38480189	38480389	-	1	NA	NA	NA	17	NM_001102414	117591	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.035000	0.557214	
mm_56801.1	chr6	116656862	116657062	-	1	NA	NA	NA	6278	NM_001166580	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.000000	0.402985	
mm_4479.1	chr1	173435919	173436119	+	1	NA	NA	NA	15415	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.015000	0.432836	
mm_34219.1	chr4	140977303	140977503	+	1	NA	NA	NA	-9470	NM_029097	74772	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.035000	0.616915	
mm_77415.1	chr8	120634289	120634489	-	1	NA	NA	NA	-7	NM_197988	68918	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0.140000	0.815920	
mm_51435.1	chr6	79818163	79818363	+	1	NA	NA	NA	232	NM_001190732	100463512	Mm.461086	NM_001190732	ENSMUSG00000096887	Gm20594	Mtrnr2l	predicted gene, 20594	protein-coding	0.010000	0.378109	
mm_95185.1	chr11	42420742	42420942	+	1	NA	NA	NA	-508	NM_001347314	14401	Mm.338723	NM_008070	ENSMUSG00000007653	Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding	0.015000	0.522388	
mm_168444.1	chr1	140648958	140649158	-	1	NA	NA	NA	7344	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0.035000	0.447761	-18(TGCTTTAAAAGA,-,0.00),-17(GCTTTAAAAGAA,+,0.00)
mm_163881.1	chr14	21499653	21499853	+	1	NA	NA	NA	-17	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.145000	0.840796	
mm_88451.1	chr10	77553767	77553967	+	1	NA	NA	NA	23519	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.000000	0.497512	
mm_13904.1	chr2	120484237	120484437	+	1	NA	NA	NA	7428	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.000000	0.437811	
mm_96777.1	chr11	69939808	69940008	+	1	NA	NA	NA	3580	NM_001347634	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.030000	0.587065	
mm_139582.1	chr17	57106538	57106738	+	1	NA	NA	NA	-696	NR_033508	100169874	Mm.76700	NR_033508	ENSMUSG00000079414	Gm11110	ENSMUSG00000079414	predicted gene 11110	ncRNA	0.010000	0.512438	
mm_14668.1	chr2	139493819	139494019	+	1	NA	NA	NA	-1	NM_175467	228677	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	0.005000	0.432836	-74(ATCTTTAAAAGT,-,0.00),-73(TCTTTAAAAGTC,+,0.00)
mm_28829.1	chr3	96401914	96402114	-	1	NA	NA	NA	12819	NR_001579	21748		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	0.105000	0.651741	
mm_112201.1	chr12	113426674	113426874	-	1	NA	NA	NA	-62791	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.577114	
mm_14522.1	chr2	132691794	132691994	+	1	NA	NA	NA	1611	NM_028637	73747	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0.015000	0.522388	
mm_105797.1	chr11	110095862	110096062	-	1	NA	NA	NA	-25	NM_153145	217258	Mm.344148	NM_153145	ENSMUSG00000041828	Abca8a	-	ATP-binding cassette, sub-family A (ABC1), member 8a	protein-coding	0.010000	0.457711	
mm_126444.1	chr15	80711153	80711353	+	1	NA	NA	NA	-60	NM_144812	213988	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.045000	0.567164	
mm_139817.1	chr17	67521064	67521264	+	1	NA	NA	NA	111559	NM_001033340	240131	Mm.295736	NM_001033340	ENSMUSG00000073375	Lrrc30	Gm326	leucine rich repeat containing 30	protein-coding	0.015000	0.497512	-34(CACTTTATAAAC,-,0.00),-32(CTTTATAAACAG,+,0.00)
mm_17595.1	chr2	30796535	30796735	-	1	NA	NA	NA	5102	NM_198000	73598	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.030000	0.601990	
mm_152225.1	chr19	8707700	8707900	-	1	NA	NA	NA	6097	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.020000	0.562189	
mm_159635.1	chr4	138877869	138878069	+	1	NA	NA	NA	27	NM_012044	26970	Mm.296007	NM_012044	ENSMUSG00000028751	Pla2g2e	-	phospholipase A2, group IIE	protein-coding	0.010000	0.542289	
mm_62628.1	chr7	107594977	107595177	+	1	NA	NA	NA	26	NM_008905	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.050000	0.696517	
mm_164849.1	chr18	45558918	45559118	+	1	NA	NA	NA	-1136	NM_080465	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.045000	0.651741	
mm_116874.1	chr13	55021118	55021318	-	1	NA	NA	NA	167	NM_001206392	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.010000	0.492537	
mm_81907.1	chr9	120002251	120002451	+	1	NA	NA	NA	-17693	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.055000	0.597015	
mm_91049.1	chr10	18743626	18743826	-	1	NA	NA	NA	32	NM_001033258	215821	Mm.40491	NM_001033258	ENSMUSG00000019852	Arfgef3	9630004D11|B930094H20Rik|BIG3|D10Bwg1379e|mKIAA1244	ARFGEF family member 3	protein-coding	0.115000	0.726368	
mm_32691.1	chr4	115884237	115884437	+	1	NA	NA	NA	-63	NM_001039124	654462	Mm.388913	NM_001039124	ENSMUSG00000073774	Kncn	Kino|L5	kinocilin	protein-coding	0.015000	0.572139	-33(ACTTTAATAGGC,+,0.00)
mm_112654.1	chr13	16026353	16026553	+	1	NA	NA	NA	14602	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.025000	0.552239	-14(GGGCTTAAAGGG,-,0.00),-12(GCTTAAAGGGGG,+,0.00)
mm_156775.1	chrX	161082421	161082621	+	1	NA	NA	NA	-80229	NM_001290652	107815	Mm.159173	NM_133194	ENSMUSG00000000037	Scml2	4932420G07Rik	sex comb on midleg-like 2 (Drosophila)	protein-coding	0.060000	0.597015	-91(GTCCTTTTAAGC,-,0.00),-89(CCTTTTAAGCCC,+,0.00)
mm_96812.1	chr11	69991605	69991805	+	1	NA	NA	NA	335	NM_019749	56486	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0.105000	0.646766	
mm_120443.1	chr14	65968401	65968601	+	1	NA	NA	NA	18	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.035000	0.606965	
mm_72812.1	chr8	87521276	87521476	+	1	NA	NA	NA	-42531	NM_177901	330820	Mm.212913	NM_177901	ENSMUSG00000069971	4933402J07Rik	-	RIKEN cDNA 4933402J07 gene	protein-coding	0.010000	0.532338	
mm_134126.1	chr16	10395204	10395404	-	1	NA	NA	NA	144	NM_001099275	70426	Mm.142181	NM_001099275	ENSMUSG00000039179	Tekt5	3300001K11Rik	tektin 5	protein-coding	0.045000	0.606965	
mm_154152.1	chr19	58455192	58455392	-	1	NA	NA	NA	106	NM_001285457	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.045000	0.621891	
mm_139807.1	chr17	66235650	66235850	+	1	NA	NA	NA	112230	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.010000	0.537313	-34(CCCTATAAAGGG,+,0.00),-34(CCCTATAAAGGG,-,0.00)
mm_75153.1	chr8	36182189	36182389	-	1	NA	NA	NA	67227	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.025000	0.497512	
mm_70446.1	chr8	11728113	11728313	+	1	NA	NA	NA	108	NM_001113517	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.175000	0.786070	
mm_106002.1	chr11	115699333	115699533	-	1	NA	NA	NA	101	NM_001313937	14784	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.025000	0.601990	
mm_40872.1	chr5	74092967	74093167	+	1	NA	NA	NA	7	NR_145131	70036	Mm.46547	NR_015531	ENSMUSG00000053656	Dancr	2700023E23Rik	differentiation antagonizing non-protein coding RNA	ncRNA	0.070000	0.646766	
mm_142319.1	chr17	43157787	43157987	-	1	NA	NA	NA	404	NR_045155	545207	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0.015000	0.432836	
mm_151272.1	chr19	55195792	55195992	+	1	NA	NA	NA	3214	NR_106146	102465990		NR_106146	ENSMUSG00000098289	Mir6715	Gm27474|mmu-mir-6715	microRNA 6715	ncRNA	0.000000	0.427861	
mm_8031.1	chr1	135133110	135133310	-	1	NA	NA	NA	485	NM_177081	320139	Mm.258388	NM_177081	ENSMUSG00000031506	Ptpn7	BPTP-4|C920001D21Rik|HEPTP|LC-PTP|LPTP	protein tyrosine phosphatase, non-receptor type 7	protein-coding	0.025000	0.611940	
mm_105656.1	chr11	107319158	107319358	-	1	NA	NA	NA	-129877	NM_001161329	68979	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.020000	0.497512	
mm_47744.1	chr5	130255286	130255486	-	1	NA	NA	NA	144	NM_023248	66711	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	Shwachman-Bodian-Diamond syndrome homolog (human)	protein-coding	0.095000	0.621891	
mm_85093.1	chr9	92250379	92250579	-	1	NA	NA	NA	285	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.075000	0.636816	
mm_1114.1	chr1	59874662	59874862	+	1	NA	NA	NA	-38244	NM_001037725	72750	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0.005000	0.398010	
mm_73974.1	chr8	120525261	120525461	+	1	NA	NA	NA	-10496	NM_001145897	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.005000	0.552239	
mm_70715.1	chr8	15077622	15077822	+	1	NA	NA	NA	20069	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.030000	0.457711	
mm_44491.1	chr5	23675833	23676033	-	1	NA	NA	NA	36734	NR_038090	433855	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	0.160000	0.786070	
mm_50582.1	chr6	49056460	49056660	+	1	NA	NA	NA	-17235	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.010000	0.497512	
mm_12498.1	chr2	71866030	71866230	+	1	NA	NA	NA	-7094	NM_172665	228026	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.010000	0.417910	-34(TCGTATAAAGGG,-,0.00)
mm_36339.1	chr4	72200781	72200981	-	1	NA	NA	NA	12	NM_011599	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.145000	0.741294	
mm_43593.1	chr5	137761578	137761778	+	1	NA	NA	NA	15709	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.010000	0.552239	
mm_8864.1	chr1	162813167	162813367	-	1	NA	NA	NA	-718	NM_144878	226564	Mm.155164	NM_144878	ENSMUSG00000026692	Fmo4	D1Ertd532e	flavin containing monooxygenase 4	protein-coding	0.005000	0.417910	
mm_151546.1	chr19	59322188	59322388	+	1	NA	NA	NA	23492	NM_001033222	107368	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0.065000	0.512438	
mm_154304.1	chr19	61225989	61226189	-	1	NA	NA	NA	2329	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.080000	0.626866	
mm_120046.1	chr14	56575553	56575753	+	1	NA	NA	NA	34	NM_001145978	328417	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	0.090000	0.706468	-97(CCTCTAAGGGGC,+,0.00)
mm_95946.1	chr11	58386697	58386897	+	1	NA	NA	NA	6151	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.025000	0.437811	
mm_164342.1	chr16	14708237	14708437	+	1	NA	NA	NA	2478	NM_011415	20583	Mm.4272	NM_011415	ENSMUSG00000022676	Snai2	Slug|Slugh|Snail2	snail family zinc finger 2	protein-coding	0.010000	0.412935	
mm_79234.1	chr9	50499080	50499280	+	1	NA	NA	NA	4655	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.040000	0.532338	
mm_164574.1	chr17	24169535	24169735	-	1	NA	NA	NA	-206	NM_009729	11984	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0.085000	0.651741	
mm_166596.1	chr6	65042606	65042806	+	1	NA	NA	NA	39	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.105000	0.651741	
mm_20488.1	chr2	130048442	130048642	-	1	NA	NA	NA	-32134	NR_105757	102466628		NR_105757	ENSMUSG00000098347	Mir6339	Gm27848|mmu-mir-6339	microRNA 6339	ncRNA	0.005000	0.567164	
mm_21578.1	chr2	164237107	164237307	-	1	NA	NA	NA	1134	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.000000	0.393035	
mm_61410.1	chr7	73537978	73538178	+	1	NA	NA	NA	3668	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.050000	0.552239	
mm_110574.1	chr12	56373764	56373964	-	1	NA	NA	NA	-27970	NM_145442	217588	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0.040000	0.383085	
mm_170732.1	chr2	152226804	152227004	+	1	NA	NA	NA	64	NM_007788	12995	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0.105000	0.701493	
mm_65030.1	chr7	18524660	18524860	-	1	NA	NA	NA	7467	NM_054060	114868	Mm.389809	NM_054060	ENSMUSG00000070798	Psg25	cea13	pregnancy-specific glycoprotein 25	protein-coding	0.025000	0.472637	
mm_123228.1	chr14	59677464	59677664	-	1	NA	NA	NA	52283	NM_145463	219134	Mm.275409	NM_145463	ENSMUSG00000044461	Shisa2	9430059P22Rik|MAd2|Tmem46|mShisa|shisa	shisa family member 2	protein-coding	0.000000	0.557214	
mm_151736.1	chr19	4927220	4927420	-	1	NA	NA	NA	967	NM_133803	75221	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324	dipeptidylpeptidase 3	protein-coding	0.015000	0.517413	
mm_17783.1	chr2	32966784	32966984	-	1	NA	NA	NA	3583	NR_002898	104367	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0.105000	0.656716	
mm_8134.1	chr1	136246655	136246855	-	1	NA	NA	NA	-12475	NM_028872	67313	Mm.36763	NM_028872	ENSMUSG00000041605	5730559C18Rik	1700034M08Rik|4933426C09Rik|AI586180|D1Mgi54	RIKEN cDNA 5730559C18 gene	protein-coding	0.005000	0.338308	
mm_97198.1	chr11	75588065	75588265	+	1	NA	NA	NA	86	NM_008850	18738	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.145000	0.776119	
mm_131285.1	chr16	11176108	11176308	+	1	NA	NA	NA	185	NR_027502	106205	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	0.160000	0.721393	
mm_128666.1	chr15	60186792	60186992	-	1	NA	NA	NA	-170274	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.015000	0.398010	
mm_65450.1	chr7	25412737	25412937	-	1	NA	NA	NA	49	NM_153576	232983	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0.005000	0.462687	30(GCCTTTAAGAAC,-,0.00),31(CCTTTAAGAACC,+,0.00)
mm_34261.1	chr4	141421588	141421788	+	1	NA	NA	NA	909	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.040000	0.641791	-19(GGCCTTATAAAG,-,0.00),-17(CCTTATAAAGCG,+,0.00)
mm_46413.1	chr5	104093270	104093470	-	1	NA	NA	NA	-15762	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.005000	0.412935	
mm_156502.1	chrX	145729815	145730015	+	1	NA	NA	NA	-242276	NM_153319	27494	Mm.100068	NM_153319	ENSMUSG00000041688	Amot	CAG-2|D0Kist1|Sii6	angiomotin	protein-coding	0.000000	0.378109	
mm_51774.1	chr6	88090041	88090241	+	1	NA	NA	NA	5668	NM_133933	103963	Mm.188544	NM_133933	ENSMUSG00000030062	Rpn1	AU018702|D6Wsu137e|Rpn-1	ribophorin I	protein-coding	0.050000	0.492537	
mm_13070.1	chr2	91118946	91119146	+	1	NA	NA	NA	902	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.005000	0.497512	-99(TCTTATATGGTG,+,0.00)
mm_139345.1	chr17	50239108	50239308	+	1	NA	NA	NA	0	NR_131975	446210	Mm.378184	NM_001004437	ENSMUSG00000067103	AY702103	STDP2	cDNA sequence AY702103	ncRNA	0.005000	0.502488	
mm_167802.1	chr9	123928096	123928296	+	1	NA	NA	NA	40496	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.045000	0.527363	
mm_85821.1	chr9	110419883	110420083	-	1	NA	NA	NA	175	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.025000	0.517413	
mm_147284.1	chr18	39488638	39488838	-	1	NA	NA	NA	-1493	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.020000	0.412935	-78(CCTTTTAGAAAG,+,0.00)
mm_85384.1	chr9	103227864	103228064	-	1	NA	NA	NA	2322	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.050000	0.557214	
mm_110512.1	chr12	54734617	54734817	-	1	NA	NA	NA	-38823	NM_025456	66266	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	0.075000	0.606965	
mm_102123.1	chr11	53324501	53324701	-	1	NA	NA	NA	-88	NM_026479	67966	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0.040000	0.547264	
mm_169062.1	chr13	26441634	26441834	+	1	NA	NA	NA	-129328	NR_045933	73576	Mm.45473	NR_045933		1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	0.050000	0.656716	
mm_85139.1	chr9	95795854	95796054	-	1	NA	NA	NA	-45596	NM_011643	22063	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0.010000	0.398010	
mm_43786.1	chr5	142629463	142629663	+	1	NA	NA	NA	-21	NM_178398	74781	Mm.29432	NM_178398	ENSMUSG00000029578	Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding	0.165000	0.756219	
mm_102676.1	chr11	65243562	65243762	-	1	NA	NA	NA	26327	NM_145136	214384	Mm.32257	NM_145136	ENSMUSG00000020542	Myocd	BSAC2A|Srfcp	myocardin	protein-coding	0.010000	0.557214	
mm_108139.1	chr12	76215347	76215547	+	1	NA	NA	NA	31299	NM_019784	80384	Mm.78551	NM_019784	ENSMUSG00000021056	Tex21	4931406F04Rik|4931412D23Rik|4931421K24Rik|tsec-2	testis expressed gene 21	protein-coding	0.020000	0.547264	
mm_123206.1	chr14	59365348	59365548	-	1	NA	NA	NA	42	NM_199015	219132	Mm.479285	NM_199015	ENSMUSG00000068245	Phf11d	D14Ertd668e|Phf11|Phf11l	PHD finger protein 11D	protein-coding	0.030000	0.492537	
mm_66527.1	chr7	45128636	45128836	-	1	NA	NA	NA	9	NM_009438	22121	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	0.100000	0.651741	
mm_49697.1	chr6	33973203	33973403	+	1	NA	NA	NA	-56145	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.015000	0.487562	
mm_165469.1	chr2	164237405	164237605	+	1	NA	NA	NA	836	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.442786	
mm_66254.1	chr7	35646979	35647179	-	1	NA	NA	NA	403	NM_019746	56330	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0.105000	0.711443	
mm_110108.1	chr12	26442764	26442964	-	1	NA	NA	NA	13588	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.010000	0.398010	
mm_26037.1	chr3	135544598	135544798	+	1	NA	NA	NA	59087	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.045000	0.457711	
mm_2026.1	chr1	87181147	87181347	+	1	NA	NA	NA	-2067	NM_027084	69453	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	0.010000	0.522388	
mm_89696.1	chr10	97607009	97607209	+	1	NA	NA	NA	-96	NM_008438	16545	Mm.6228	NM_008438	ENSMUSG00000019932	Kera	CNA2|SLRR2B	keratocan	protein-coding	0.000000	0.452736	
mm_33508.1	chr4	130913206	130913406	+	1	NA	NA	NA	-28	NM_010686	16792	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3	lysosomal-associated protein transmembrane 5	protein-coding	0.045000	0.592040	
mm_147394.1	chr18	44253344	44253544	-	1	NA	NA	NA	-16683	NM_010935	18169	Mm.57234	NM_010935	ENSMUSG00000038071	Npy6r	-	neuropeptide Y receptor Y6	protein-coding	0.000000	0.452736	
mm_94714.1	chr11	20542818	20543018	+	1	NA	NA	NA	-335	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.070000	0.636816	
mm_68564.1	chr7	115312817	115313017	-	1	NA	NA	NA	361643	NR_040319	101786	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0.000000	0.497512	
mm_93638.1	chr10	117282337	117282537	-	1	NA	NA	NA	-165	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.005000	0.398010	
mm_98316.1	chr11	90249337	90249537	+	1	NA	NA	NA	-39	NM_026178	67468	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.125000	0.800995	
mm_18034.1	chr2	38714403	38714603	-	1	NA	NA	NA	39	NM_139051	26423	Mm.31387	NM_139051	ENSMUSG00000026751	Nr5a1	Ad4BP|ELP|ELP-3|Ftz-F1|Ftzf1|SF-1|SF1|STF-1	nuclear receptor subfamily 5, group A, member 1	protein-coding	0.050000	0.681592	
mm_56907.1	chr6	119196623	119196823	-	1	NA	NA	NA	-314	NM_001255999	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.025000	0.537313	
mm_6942.1	chr1	85727147	85727347	-	1	NA	NA	NA	9359	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.005000	0.393035	
mm_79449.1	chr9	56114001	56114201	+	1	NA	NA	NA	24125	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.020000	0.537313	
mm_53490.1	chr6	135196793	135196993	+	1	NA	NA	NA	-1094	NM_028982	74525	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|Kiaa1467|mKIAA1467	family with sequence similarity 234, member B	protein-coding	0.020000	0.507463	
mm_78858.1	chr9	44396842	44397042	+	1	NA	NA	NA	15	NM_001293631	14385	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0.055000	0.631841	
mm_152961.1	chr19	29360842	29361042	-	1	NA	NA	NA	929	NM_026362	67759	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0.010000	0.472637	
mm_55010.1	chr6	48840390	48840590	-	1	NA	NA	NA	498	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.005000	0.542289	
mm_154399.1	chrM	13549	13749	+	1	NA	NA	NA	NA	NA									0.020000	0.373134	
mm_89795.1	chr10	102511948	102512148	+	1	NA	NA	NA	-174	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding	0.005000	0.502488	
mm_144084.1	chr17	94749781	94749981	-	1	NA	NA	NA	11	NM_176917	76781	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding	0.080000	0.582090	
mm_50235.1	chr6	42351180	42351380	+	1	NA	NA	NA	1452	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.015000	0.582090	
mm_55339.1	chr6	56369532	56369732	-	1	NA	NA	NA	2	NM_001159957	18575	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0.060000	0.552239	
mm_23522.1	chr3	60617005	60617205	+	1	NA	NA	NA	115926	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.333333	2(CTTTTTAAACTC,+,0.00)
mm_121031.1	chr14	79769804	79770004	+	1	NA	NA	NA	1408	NM_001042726	18530	Mm.390715	NM_021543	ENSMUSG00000036422	Pcdh8	1700080P15Rik|Papc	protocadherin 8	protein-coding	0.130000	0.721393	
mm_128473.1	chr15	50888949	50889149	-	1	NA	NA	NA	0	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.050000	0.636816	
mm_94968.1	chr11	30883634	30883834	+	1	NA	NA	NA	-1624	NM_175490	237716	Mm.338361	NM_175490	ENSMUSG00000043999	Gpr75	-	G protein-coupled receptor 75	protein-coding	0.015000	0.442786	
mm_114035.1	chr13	52985878	52986078	+	1	NA	NA	NA	-4939	NM_017373	18030	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0.010000	0.432836	
mm_118257.1	chr13	112437951	112438151	-	1	NA	NA	NA	-26019	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.020000	0.407960	-43(GCTTTTCTAGAC,+,0.00)
mm_169745.1	chr15	86195110	86195310	+	1	NA	NA	NA	-9069	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.085000	0.557214	-38(AACTTTAAATGG,-,0.00)
mm_146254.1	chr18	77789817	77790017	+	1	NA	NA	NA	-4633	NM_013831	19201	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.015000	0.482587	
mm_73134.1	chr8	94974613	94974813	+	1	NA	NA	NA	-2396	NM_001198894	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.010000	0.542289	
mm_88057.1	chr10	67547873	67548073	+	1	NA	NA	NA	982	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.040000	0.611940	
mm_24306.1	chr3	89393762	89393962	+	1	NA	NA	NA	-428	NR_040404	545539	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	ENSMUSG00000074466|OTTMUSG00000021274	predicted gene 15417	ncRNA	0.025000	0.626866	
mm_68637.1	chr7	118243578	118243778	-	1	NA	NA	NA	-41	NM_001031814	233789	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	0.125000	0.746269	
mm_149955.1	chr19	28835009	28835209	+	1	NA	NA	NA	-57	NM_009199	20510	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	0.140000	0.746269	
mm_34456.1	chr4	148085764	148085964	+	1	NA	NA	NA	2200	NM_009642	11610	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.015000	0.562189	
mm_117387.1	chr13	73347160	73347360	-	1	NA	NA	NA	124	NR_045293	432777	Mm.415319	NR_045293		D630045M09Rik	AU019512	RIKEN cDNA D630045M09 gene	ncRNA	0.015000	0.557214	
mm_72858.1	chr8	88428717	88428917	+	1	NA	NA	NA	-66626	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.015000	0.522388	
mm_118172.1	chr13	106836264	106836464	-	1	NA	NA	NA	100551	NM_029665	76582	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.020000	0.477612	22(GCTTTAAAATTC,+,0.00)
mm_49049.1	chr6	4903222	4903422	+	1	NA	NA	NA	2	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.185000	0.835821	
mm_132393.1	chr16	35000546	35000746	+	1	NA	NA	NA	-21775	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.020000	0.383085	-20(AGCTAGAAAAGG,-,0.00)
mm_170784.1	chr2	174437302	174437502	-	1	NA	NA	NA	1637	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.015000	0.497512	
mm_61352.1	chr7	68289448	68289648	+	1	NA	NA	NA	-12954	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.015000	0.477612	
mm_55017.1	chr6	48840679	48840879	-	1	NA	NA	NA	209	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.015000	0.562189	
mm_106873.1	chr12	8010441	8010641	+	1	NA	NA	NA	32864	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.417910	
mm_88916.1	chr10	81182305	81182505	+	1	NA	NA	NA	-602	NM_001190474	13144	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.015000	0.522388	
mm_27194.1	chr3	34761119	34761319	-	1	NA	NA	NA	-10856	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA	0.010000	0.527363	
mm_108063.1	chr12	73937565	73937765	+	1	NA	NA	NA	-26865	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.005000	0.373134	
mm_112484.1	chr13	5869579	5869779	+	1	NA	NA	NA	8190	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.015000	0.388060	-91(CTTTTTATGCAG,+,0.00)
mm_125441.1	chr15	44787658	44787858	+	1	NA	NA	NA	-5	NR_040309	69659	Mm.352401	NR_040309	ENSMUSG00000097102	2310069G16Rik	-	RIKEN cDNA 2310069G16 gene	ncRNA	0.125000	0.746269	
mm_63296.1	chr7	126807720	126807920	+	1	NA	NA	NA	-7373	NM_001177308	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.015000	0.587065	
mm_95979.1	chr11	58963726	58963926	+	1	NA	NA	NA	45	NM_031172	56631	Mm.179733	NM_031172	ENSMUSG00000036964	Trim17	Rnf16|terf	tripartite motif-containing 17	protein-coding	0.045000	0.601990	
mm_127898.1	chr15	9469351	9469551	-	1	NA	NA	NA	33423	NM_029341	75568	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	0.005000	0.467662	
mm_129599.1	chr15	79834201	79834401	-	1	NA	NA	NA	32	NM_001013360	504193	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	0.135000	0.761194	
mm_114042.1	chr13	54071737	54071937	+	1	NA	NA	NA	-8	NM_027324	14057	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	0.165000	0.771144	
mm_79187.1	chr9	48418219	48418419	+	1	NA	NA	NA	-36025	NR_026561	667933	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.010000	0.353234	-59(TCTTTTATGCAG,+,0.00)
mm_153935.1	chr19	47460516	47460716	-	1	NA	NA	NA	3795	NM_001164717	14218	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.045000	0.601990	
mm_51724.1	chr6	86946831	86947031	+	1	NA	NA	NA	-62905	NM_001170591	56748	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	0.020000	0.368159	
mm_23525.1	chr3	60617356	60617556	+	1	NA	NA	NA	116277	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.000000	0.363184	
mm_129720.1	chr15	81955618	81955818	-	1	NA	NA	NA	5212	NM_001282040	29858	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	0.055000	0.567164	
mm_39100.1	chr4	154919963	154920163	-	1	NA	NA	NA	8014	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.005000	0.343284	
mm_111240.1	chr12	84772978	84773178	-	1	NA	NA	NA	34	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.095000	0.646766	
mm_42273.1	chr5	114146438	114146638	+	1	NA	NA	NA	15382	NM_011677	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.005000	0.542289	
mm_160754.1	chr10	81812034	81812234	+	1	NA	NA	NA	-52	NM_001142963	100233208	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	ENSMUSG00000074860	predicted gene 10778	protein-coding	0.045000	0.562189	
mm_131610.1	chr16	19241137	19241337	+	1	NA	NA	NA	45504	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.010000	0.422886	
mm_43870.1	chr5	143503534	143503734	+	1	NA	NA	NA	24359	NM_009007	19353	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	RAS-related C3 botulinum substrate 1	protein-coding	0.010000	0.432836	
mm_126943.1	chr15	92051101	92051301	+	1	NA	NA	NA	36	NM_001159648	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.060000	0.651741	
mm_46986.1	chr5	115313666	115313866	-	1	NA	NA	NA	12646	NR_131932	102639268	Mm.319998	NR_131932		Gm13830	OTTMUSG00000014646	predicted gene 13830	ncRNA	0.020000	0.557214	
mm_57459.1	chr6	125171960	125172160	-	1	NA	NA	NA	-5593	NM_001289726	14433	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0.020000	0.507463	-91(CGCCTTTAATGC,-,0.00),-89(CCTTTAATGCCC,+,0.00)
mm_162299.1	chr1	34459632	34459832	+	1	NA	NA	NA	-14	NM_011206	19253	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.070000	0.616915	
mm_126520.1	chr15	81912170	81912370	+	1	NA	NA	NA	13943	NM_030229	78929	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	0.035000	0.597015	
mm_42107.1	chr5	110544248	110544448	+	1	NA	NA	NA	-7	NM_198306	231605	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	0.170000	0.791045	
mm_28165.1	chr3	87846694	87846894	-	1	NA	NA	NA	39	NM_021309	27371	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	0.005000	0.462687	
mm_166000.1	chr4	115563526	115563726	+	1	NA	NA	NA	-23	NM_001252539	666168	Mm.482086	NM_201640	ENSMUSG00000028712	Cyp4a31	-	cytochrome P450, family 4, subfamily a, polypeptide 31	protein-coding	0.005000	0.422886	
mm_132694.1	chr16	43253603	43253803	+	1	NA	NA	NA	6419	NM_019778	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.005000	0.343284	
mm_148016.1	chr18	68427796	68427996	-	1	NA	NA	NA	-56	NM_001271717	17200	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	0.025000	0.517413	
mm_44798.1	chr5	32785529	32785729	-	1	NA	NA	NA	-3	NM_177298	320951	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.125000	0.701493	
mm_172122.1	chr6	3201135	3201335	+	1	NA	NA	NA	-87284	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.090000	0.611940	
mm_128333.1	chr15	38455030	38455230	-	1	NA	NA	NA	35417	NR_105916	102465574		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.015000	0.512438	
mm_87505.1	chr10	52381396	52381596	+	1	NA	NA	NA	628	NM_053187	94221	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0.040000	0.512438	17(AGGTTTTTAAGG,-,0.00),42(TGCTTTAAATGG,-,0.00)
mm_141857.1	chr17	34803405	34803605	-	1	NA	NA	NA	921	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.025000	0.621891	
mm_20026.1	chr2	119462146	119462346	-	1	NA	NA	NA	15383	NM_026574	68142	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	0.005000	0.467662	
mm_484.1	chr1	36761718	36761918	+	1	NA	NA	NA	20	NM_009539	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.030000	0.547264	
mm_125666.1	chr15	65804909	65805109	+	1	NA	NA	NA	17968	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0.000000	0.348259	
mm_15531.1	chr2	158382870	158383070	+	1	NA	NA	NA	7332	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.020000	0.373134	
mm_29517.1	chr3	116424040	116424240	-	1	NA	NA	NA	-108	NM_001173553	229776	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.055000	0.626866	17(GTCCCTTTAAGG,-,0.00),18(TCCCTTTAAGGG,-,0.00),19(CCCTTTAAGGGA,+,0.00),20(CCTTTAAGGGAT,+,0.00)
mm_34158.1	chr4	139431024	139431224	+	1	NA	NA	NA	50465	NM_001160319	69116	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0.010000	0.452736	
mm_103267.1	chr11	71285214	71285414	-	1	NA	NA	NA	-82	NR_027858	627984	Mm.390378	NM_001039234	ENSMUSG00000092528	Nlrp1c-ps	Nalp1c|Nlrp1c|OTTMUSG00000006090	NLR family, pyrin domain containing 1C, pseudogene	pseudo	0.010000	0.497512	
mm_105292.1	chr11	102470006	102470206	-	1	NA	NA	NA	-223	NM_010575	16399	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0.005000	0.532338	
mm_59716.1	chr7	28767124	28767324	+	1	NA	NA	NA	472	NM_001122766	64383	Mm.272443	NM_022432	ENSMUSG00000015149	Sirt2	5730427M03Rik|SIR2L2|Sir2l	sirtuin 2	protein-coding	0.020000	0.502488	
mm_107086.1	chr12	17354782	17354982	+	1	NA	NA	NA	-510	NR_037226	100526470		NR_037226	ENSMUSG00000093037	Mir3066	mir-3066|mmu-mir-3066	microRNA 3066	ncRNA	0.010000	0.442786	
mm_60028.1	chr7	30973701	30973901	+	1	NA	NA	NA	-3	NR_038860	76415	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.050000	0.656716	
mm_105061.1	chr11	100715789	100715989	-	1	NA	NA	NA	2039	NM_029307	75482	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.020000	0.442786	
mm_119852.1	chr14	54440986	54441186	+	1	NA	NA	NA	9488	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.015000	0.472637	
mm_124853.1	chr15	9528397	9528597	+	1	NA	NA	NA	1379	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.005000	0.398010	
mm_38445.1	chr4	139967501	139967701	-	1	NA	NA	NA	19	NR_035519	100316727		NR_035519	ENSMUSG00000089294	Mir2139	mmu-mir-2139	microRNA 2139	ncRNA	0.020000	0.572139	
mm_127384.1	chr15	100952323	100952523	+	1	NA	NA	NA	16152	NM_011323	20273	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	0.005000	0.363184	
mm_36514.1	chr4	84356944	84357144	-	1	NA	NA	NA	-312165	NR_130998	78238	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	0.010000	0.422886	
mm_42647.1	chr5	118639426	118639626	+	1	NA	NA	NA	78807	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.015000	0.383085	26(TCCTTTTAAAAC,-,0.00),27(CCTTTTAAAACT,+,0.00)
mm_31367.1	chr4	47305967	47306167	+	1	NA	NA	NA	-47155	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.005000	0.422886	-60(GCTTAAATAGCT,+,0.00)
mm_5341.1	chr1	24587319	24587519	-	1	NA	NA	NA	18	NM_007733	12823	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.075000	0.656716	
mm_42328.1	chr5	114901758	114901958	+	1	NA	NA	NA	4924	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.005000	0.402985	
mm_38788.1	chr4	148089086	148089286	-	1	NA	NA	NA	-1122	NM_001301281	11610	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.005000	0.457711	
mm_115363.1	chr13	112987730	112987930	+	1	NA	NA	NA	28	NM_001081062	218630	Mm.25457	NM_001081062	ENSMUSG00000042417	Ccno	C86987|Ccnu|E130318K11|Ung2	cyclin O	protein-coding	0.105000	0.696517	
mm_19678.1	chr2	103454466	103454666	-	1	NA	NA	NA	30498	NM_010125	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.030000	0.378109	
mm_41368.1	chr5	90518849	90519049	+	1	NA	NA	NA	0	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.000000	0.308458	-33(TACTATAAAAAG,-,0.00),7(TCCTTTAAATGC,-,0.00)
mm_153894.1	chr19	46985285	46985485	-	1	NA	NA	NA	-15818	NM_001164365	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.015000	0.562189	
mm_93356.1	chr10	103028677	103028877	-	1	NA	NA	NA	0	NM_172553	216285	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding	0.040000	0.562189	-33(AGATATAAAAGC,-,0.00)
mm_124471.1	chr14	121378868	121379068	-	1	NA	NA	NA	262	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.145000	0.815920	
mm_10864.1	chr2	25080387	25080587	+	1	NA	NA	NA	164	NM_028093	72090	Mm.33403	NM_028093	ENSMUSG00000036813	Entpd8	-	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding	0.010000	0.567164	
mm_168167.1	chr10	5289385	5289585	-	1	NA	NA	NA	-94778	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.040000	0.587065	
mm_153380.1	chr19	40376645	40376845	-	1	NA	NA	NA	25565	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.040000	0.656716	
mm_114257.1	chr13	56706457	56706657	+	1	NA	NA	NA	2889	NM_001164042	17129	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.000000	0.388060	
mm_47607.1	chr5	125102808	125103008	-	1	NA	NA	NA	76306	NM_001253905	20602	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.025000	0.592040	
mm_57633.1	chr6	128340206	128340406	-	1	NA	NA	NA	15545	NM_011657	22158	Mm.291783	NM_011657	ENSMUSG00000001521	Tulp3	2310022L06Rik|AI316887	tubby-like protein 3	protein-coding	0.015000	0.452736	74(ACCTCTAAATGC,-,0.00)
mm_30401.1	chr3	152252973	152253173	-	1	NA	NA	NA	13247	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.005000	0.338308	
mm_98955.1	chr11	98470445	98470645	+	1	NA	NA	NA	23711	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.015000	0.422886	55(CCTTATAAACCT,+,0.00),64(CCTTCTTAAAGG,-,0.00),65(CTTCTTAAAGGC,+,0.00)
mm_29127.1	chr3	105426496	105426696	-	1	NA	NA	NA	-25734	NM_001039347	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	0.015000	0.507463	
mm_86940.1	chr10	24595405	24595605	+	1	NA	NA	NA	63	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.055000	0.606965	-36(GCGTATAAAAGC,-,0.00)
mm_119611.1	chr14	51105268	51105468	+	1	NA	NA	NA	9368	NM_201239	58809	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	0.010000	0.487562	
mm_55253.1	chr6	52909520	52909720	-	1	NA	NA	NA	0	NM_001168277	231986	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.000000	0.522388	
mm_158282.1	chrX	111536287	111536487	-	1	NA	NA	NA	1572	NM_025949	67071	Mm.37617	NM_025949	ENSMUSG00000025665	Rps6ka6	2610524K04Rik|RSK4|S6K-alpha-6	ribosomal protein S6 kinase polypeptide 6	protein-coding	0.030000	0.502488	
mm_157123.1	chrX	9445751	9445951	-	1	NA	NA	NA	23473	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.298507	
mm_87420.1	chr10	50666189	50666389	+	1	NA	NA	NA	73620	NM_198007	77987	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.005000	0.278607	-62(ACTTTTATGGCA,+,0.00)
mm_88079.1	chr10	67981696	67981896	+	1	NA	NA	NA	2198	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.015000	0.427861	
mm_5284.1	chr1	20626731	20626931	-	1	NA	NA	NA	-8774	NM_153179	241035	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	0.010000	0.497512	
mm_62128.1	chr7	96951475	96951675	+	1	NA	NA	NA	48	NM_153591	244141	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.085000	0.597015	
mm_90769.1	chr10	5805333	5805533	-	1	NA	NA	NA	32	NM_025995	67141	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	0.080000	0.582090	-2(CGCCTTTTAAGA,-,0.00),-1(GCCTTTTAAGAG,-,0.00),0(CCTTTTAAGAGC,+,0.00),1(CTTTTAAGAGCT,+,0.00)
mm_138260.1	chr17	34592189	34592389	+	1	NA	NA	NA	-182	NM_017463	18515	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	0.060000	0.711443	
mm_103096.1	chr11	69921238	69921438	-	1	NA	NA	NA	48	NM_001166591	276770	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.105000	0.696517	
mm_117463.1	chr13	75943585	75943785	-	1	NA	NA	NA	139	NM_028493	73296	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	0.170000	0.810945	
mm_46171.1	chr5	96921056	96921256	-	1	NA	NA	NA	-116	NR_131152	666266	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0.015000	0.442786	
mm_49027.1	chr6	4759557	4759757	+	1	NA	NA	NA	12351	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.000000	0.298507	
mm_54755.1	chr6	41034246	41034446	-	1	NA	NA	NA	1163	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.010000	0.497512	
mm_93795.1	chr10	120783213	120783413	-	1	NA	NA	NA	17581	NR_038003	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.005000	0.373134	
mm_28119.1	chr3	86920241	86920441	-	1	NA	NA	NA	543	NM_001195496	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.135000	0.731343	62(GCTTTAAGACGG,+,0.00)
mm_7555.1	chr1	124687941	124688141	-	1	NA	NA	NA	-642482	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.278607	
mm_2995.1	chr1	133222944	133223144	+	1	NA	NA	NA	-23053	NM_001160268	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding	0.015000	0.522388	
mm_167005.1	chr7	51861720	51861920	+	1	NA	NA	NA	-195	NM_001330608	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.185000	0.771144	
mm_151854.1	chr19	5796624	5796824	-	1	NA	NA	NA	-743	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.020000	0.442786	
mm_38861.1	chr4	149426521	149426721	-	1	NA	NA	NA	10	NM_022022	63958	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0.080000	0.592040	
mm_41201.1	chr5	88328257	88328457	+	1	NA	NA	NA	11045	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.010000	0.472637	
mm_74164.1	chr8	123411453	123411653	+	1	NA	NA	NA	-11	NM_023279	22152	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	0.095000	0.656716	
mm_159075.1	chr2	25736909	25737109	+	1	NA	NA	NA	0	NM_001099301	383678	Mm.464561	NM_001099301	ENSMUSG00000079539	Obp2b	Lcn14|OTTMUSG00000012631	odorant binding protein 2B	protein-coding	0.005000	0.601990	-33(GGATATAAAGGG,-,0.00)
mm_33036.1	chr4	122836148	122836348	+	1	NA	NA	NA	21	NM_008917	19063	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.065000	0.616915	
mm_142026.1	chr17	35219490	35219690	-	1	NA	NA	NA	-14239	NM_010735	16992	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0.010000	0.497512	
mm_63555.1	chr7	128077674	128077874	+	1	NA	NA	NA	15134	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.000000	0.323383	
mm_130247.1	chr15	96640707	96640907	-	1	NA	NA	NA	1155	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.030000	0.467662	
mm_61767.1	chr7	82867209	82867409	+	1	NA	NA	NA	-24	NM_175366	108797	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0.095000	0.691542	
mm_143553.1	chr17	74173668	74173868	-	1	NA	NA	NA	121095	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.000000	0.373134	61(ATCTTTTAAAGA,-,0.00),62(TCTTTTAAAGAG,+,0.00)
mm_168081.1	chr10	121628699	121628899	-	1	NA	NA	NA	-2483	NM_001081056	73192	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	0.010000	0.447761	
mm_56720.1	chr6	115592420	115592620	-	1	NA	NA	NA	56	NM_001101431	70291	Mm.133694	NM_001101431	ENSMUSG00000068011	Mkrn2os	2510049J12Rik	makorin, ring finger protein 2, opposite strand	protein-coding	0.015000	0.482587	
mm_145541.1	chr18	60807816	60808016	+	1	NA	NA	NA	4067	NM_010545	16149	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	0.030000	0.592040	
mm_18566.1	chr2	65293442	65293642	-	1	NA	NA	NA	-54916	NM_027225	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.025000	0.497512	
mm_73452.1	chr8	106399952	106400152	+	1	NA	NA	NA	-15287	NM_011764	22751	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0.010000	0.497512	
mm_116030.1	chr13	25269873	25270073	-	1	NA	NA	NA	23	NM_009513	22360	Mm.4766	NM_009513	ENSMUSG00000048978	Nrsn1	Neurensin-1|Neuro-p24|Vmp	neurensin 1	protein-coding	0.145000	0.751244	
mm_147155.1	chr18	36679217	36679417	-	1	NA	NA	NA	49	NM_146085	225372	Mm.89673	NM_146085	ENSMUSG00000006050	Apbb3	Fe65l2|Rirl2|TR2S	amyloid beta (A4) precursor protein-binding, family B, member 3	protein-coding	0.115000	0.587065	
mm_80569.1	chr9	83925089	83925289	+	1	NA	NA	NA	52	NM_001305935	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.100000	0.736318	
mm_88647.1	chr10	79954323	79954523	+	1	NA	NA	NA	-5729	NM_175450	216156	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.005000	0.462687	
mm_55718.1	chr6	73221597	73221797	-	1	NA	NA	NA	-66	NM_001164669	330355	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0.045000	0.567164	
mm_7697.1	chr1	129680541	129680741	-	1	NA	NA	NA	407337	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	0.005000	0.373134	
mm_76215.1	chr8	83458292	83458492	-	1	NA	NA	NA	4	NM_001039137	56367	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	0.045000	0.597015	
mm_143250.1	chr17	65366729	65366929	-	1	NA	NA	NA	173953	NM_001008973	381107	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	0.000000	0.348259	
mm_49571.1	chr6	30640524	30640724	+	1	NA	NA	NA	1406	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.045000	0.537313	
mm_111999.1	chr12	110702556	110702756	-	1	NA	NA	NA	-6261	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.010000	0.452736	
mm_20.1	chr1	5083474	5083674	+	1	NA	NA	NA	488	NM_001310442	108664	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	0.060000	0.502488	
mm_163059.1	chr11	62648072	62648272	+	1	NA	NA	NA	351	NM_198861	192976	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	0.120000	0.786070	
mm_122939.1	chr14	54965226	54965426	-	1	NA	NA	NA	1281	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.060000	0.587065	
mm_129187.1	chr15	76350115	76350315	-	1	NA	NA	NA	895	NM_025340	106025	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	0.055000	0.542289	
mm_22348.1	chr2	180911457	180911657	-	1	NA	NA	NA	9379	NM_173761	228994	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	0.010000	0.547264	
mm_74927.1	chr8	25601735	25601935	-	1	NA	NA	NA	234	NM_001308481	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.090000	0.676617	
mm_70233.1	chr8	3221079	3221279	+	1	NA	NA	NA	58438	NM_010568	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.095000	0.656716	
mm_147324.1	chr18	42261997	42262197	-	1	NA	NA	NA	-26	NM_134137	107045	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	0.030000	0.512438	
mm_72677.1	chr8	84913292	84913492	+	1	NA	NA	NA	57	NR_103491	100503676	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	0.095000	0.601990	
mm_19681.1	chr2	103454560	103454760	-	1	NA	NA	NA	30493	NM_009804	12359	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0.055000	0.512438	
mm_61362.1	chr7	68860146	68860346	+	1	NA	NA	NA	-111008	NM_025549	66412	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.000000	0.383085	89(GCCTTTAAGGAC,+,0.00)
mm_113899.1	chr13	49196964	49197164	+	1	NA	NA	NA	9517	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.025000	0.562189	
mm_115461.1	chr13	119428397	119428597	+	1	NA	NA	NA	-103	NM_001079849	218693	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0.145000	0.771144	
mm_101978.1	chr11	50377525	50377725	-	1	NA	NA	NA	-94	NM_021510	59013	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.080000	0.532338	
mm_160817.1	chr11	29173427	29173627	+	1	NA	NA	NA	620	NM_134034	104570	Mm.276386	NM_134034	ENSMUSG00000020463	Smek2	AW011752|AW557776|Ppp4r3b|mKIAA1387	SMEK homolog 2, suppressor of mek1 (Dictyostelium)	protein-coding	0.060000	0.542289	
mm_84327.1	chr9	64021802	64022002	-	1	NA	NA	NA	157	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.105000	0.686567	
mm_115177.1	chr13	108316277	108316477	+	1	NA	NA	NA	40	NM_178683	218581	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.120000	0.691542	
mm_29608.1	chr3	121262860	121263060	-	1	NA	NA	NA	356	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0.165000	0.800995	14(GCCCCTTTAAGG,-,0.00),16(CCCTTTAAGGAG,+,0.00),17(CCTTTAAGGAGC,+,0.00)
mm_28455.1	chr3	90669930	90670130	-	1	NA	NA	NA	959	NM_013650	20201	Mm.21567	NM_013650	ENSMUSG00000056054	S100a8	60B8Ag|AI323541|B8Ag|CFAg|CP-10|Caga|MRP8|p8	S100 calcium binding protein A8 (calgranulin A)	protein-coding	0.000000	0.482587	
mm_128830.1	chr15	67176733	67176933	-	1	NA	NA	NA	49	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.105000	0.706468	
mm_63771.1	chr7	131371060	131371260	+	1	NA	NA	NA	14	NM_001039534	214580	Mm.272948	NM_177609	ENSMUSG00000063179	Pstk	5430423O14Rik|5730458D16Rik|Gm1099|R75284	phosphoseryl-tRNA kinase	protein-coding	0.105000	0.681592	
mm_102587.1	chr11	61855220	61855420	-	1	NA	NA	NA	-228	NM_013881	29869	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.105000	0.696517	-34(GCCTCTTAGAGG,-,0.00),-33(CCTCTTAGAGGG,+,0.00)
mm_105253.1	chr11	102353230	102353430	-	1	NA	NA	NA	11951	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.030000	0.587065	
mm_38869.1	chr4	149657835	149658035	-	1	NA	NA	NA	-2368	NR_105990	102465983		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.010000	0.502488	-26(TTCTTTAAAAAC,-,0.00),-24(CTTTAAAAACAC,+,0.00)
mm_160197.1	chr7	79143451	79143651	-	1	NA	NA	NA	5509	NM_001045489	17304	Mm.1451	NM_008594	ENSMUSG00000030605	Mfge8	AA408458|AI325141|MFG-E8|MP47|Mfgm|P47|SED1|lactadherin	milk fat globule-EGF factor 8 protein	protein-coding	0.025000	0.517413	
mm_60632.1	chr7	44815835	44816035	+	1	NA	NA	NA	-153	NM_053074	18226	Mm.2565	NM_053074	ENSMUSG00000109511	Nup62	D7Ertd649e|Nupc1|p62	nucleoporin 62	protein-coding	0.075000	0.636816	
mm_108346.1	chr12	80463091	80463291	+	1	NA	NA	NA	96	NM_133798	97827	Mm.206631	NM_133798	ENSMUSG00000032705	Exd2	4930539P14Rik|C85658|Exdl2	exonuclease 3'-5' domain containing 2	protein-coding	0.085000	0.661692	-9(GCTTTTATGCAT,+,0.00)
mm_152146.1	chr19	7206137	7206337	-	1	NA	NA	NA	47	NM_134150	107260	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	0.090000	0.641791	
mm_158290.1	chrX	112698293	112698493	-	1	NA	NA	NA	258	NM_181579	69693	Mm.34964	NM_181579	ENSMUSG00000034607	Pof1b	2310066B14Rik	premature ovarian failure 1B	protein-coding	0.015000	0.522388	
mm_78359.1	chr9	25570516	25570716	+	1	NA	NA	NA	89019	NM_026189	67484	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.025000	0.482587	
mm_110442.1	chr12	50649136	50649336	-	1	NA	NA	NA	-13	NM_008858	18760	Mm.133719	NM_008858	ENSMUSG00000002688	Prkd1	PKD|PKD1|Pkcm|Prkcm	protein kinase D1	protein-coding	0.210000	0.875622	
mm_81283.1	chr9	108306173	108306373	+	1	NA	NA	NA	113	NM_016802	11848	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	0.130000	0.666667	-91(TCTTTTATAGCC,+,0.00)
mm_121253.1	chr14	103057514	103057714	+	1	NA	NA	NA	10602	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.010000	0.512438	
mm_85602.1	chr9	107566782	107566982	-	1	NA	NA	NA	-2281	NM_010489	15587	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	0.010000	0.512438	
mm_127490.1	chr15	101322800	101323000	+	1	NA	NA	NA	29688	NR_033803	77717	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.010000	0.557214	
mm_18366.1	chr2	59469919	59470119	-	1	NA	NA	NA	-14634	NM_029723	76747	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0.025000	0.517413	
mm_13504.1	chr2	108948674	108948874	+	1	NA	NA	NA	329516	NM_029790	76894	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.025000	0.398010	
mm_120719.1	chr14	73107210	73107410	+	1	NA	NA	NA	-35200	NM_001170694	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.010000	0.457711	
mm_80115.1	chr9	70542759	70542959	+	1	NA	NA	NA	-11	NM_025690	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.135000	0.756219	
mm_169600.1	chr15	35371278	35371478	+	1	NA	NA	NA	-168	NM_177151	666173	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0.115000	0.666667	
mm_127041.1	chr15	96641218	96641418	+	1	NA	NA	NA	644	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.135000	0.671642	
mm_153344.1	chr19	39041966	39042166	-	1	NA	NA	NA	-18940	NM_028191	72303	Mm.482578	NM_028191	ENSMUSG00000067231	Cyp2c65	2210009K14Rik	cytochrome P450, family 2, subfamily c, polypeptide 65	protein-coding	0.025000	0.447761	
mm_24997.1	chr3	97628754	97628954	+	1	NA	NA	NA	16	NM_010232	14263	Mm.385180	NM_010232	ENSMUSG00000028088	Fmo5	5033418D19Rik|AI195026	flavin containing monooxygenase 5	protein-coding	0.050000	0.606965	
mm_102621.1	chr11	62466389	62466589	-	1	NA	NA	NA	8029	NM_001039536	327942	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.005000	0.477612	-28(GCTCCTAAAAGG,-,0.00)
mm_77521.1	chr8	122914058	122914258	-	1	NA	NA	NA	65784	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.005000	0.522388	
mm_55041.1	chr6	48987885	48988085	-	1	NA	NA	NA	1124	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.005000	0.542289	
mm_156140.1	chrX	128375284	128375484	+	1	NA	NA	NA	-638830	NM_001281537	73934	Mm.159093	NM_001281537	ENSMUSG00000043569	Cldn34c4	4930412D23Rik	claudin 34C4	protein-coding	0.025000	0.432836	
mm_136997.1	chr17	17402834	17403034	+	1	NA	NA	NA	248	NM_025681	66643	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.010000	0.497512	
mm_165005.1	chr19	22942205	22942405	+	1	NA	NA	NA	191700	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.010000	0.323383	74(TTTTTAATAGCC,+,0.00)
mm_104018.1	chr11	85546542	85546742	-	1	NA	NA	NA	173102	NR_045875	71489	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.000000	0.348259	
mm_32539.1	chr4	109033764	109033964	+	1	NA	NA	NA	16209	NR_030432	791075		NR_030432	ENSMUSG00000076444	Mir761	Mirn761|mir-761|mmu-mir-761	microRNA 761	ncRNA	0.000000	0.258706	
mm_156978.1	chrX	7188566	7188766	-	1	NA	NA	NA	48	NM_016691	12728	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	0.035000	0.522388	
mm_56780.1	chr6	116633481	116633681	-	1	NA	NA	NA	-4582	NM_026057	67255	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0.015000	0.477612	
mm_61991.1	chr7	91090842	91091042	+	1	NA	NA	NA	156	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.030000	0.492537	
mm_119801.1	chr14	54211357	54211557	+	1	NA	NA	NA	42472	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.497512	
mm_49316.1	chr6	18848477	18848677	+	1	NA	NA	NA	-58	NM_133939	76522	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	0.130000	0.681592	
mm_105344.1	chr11	102997462	102997662	-	1	NA	NA	NA	2359	NR_105896	102466988		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.010000	0.577114	
mm_23027.1	chr3	34649829	34650029	+	1	NA	NA	NA	-66	NM_011443	20674	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0.095000	0.636816	
mm_63840.1	chr7	135650268	135650468	+	1	NA	NA	NA	-1531	NM_001316681	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.010000	0.532338	
mm_8930.1	chr1	164097959	164098159	-	1	NA	NA	NA	-17205	NM_011347	20344	Mm.3337	NM_011347	ENSMUSG00000026580	Selp	CD62P|GMP-140|Grmp|LECAM3|PADGEM	selectin, platelet	protein-coding	0.010000	0.402985	
mm_88067.1	chr10	67702935	67703135	+	1	NA	NA	NA	-154080	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.015000	0.487562	
mm_99627.1	chr11	105092098	105092298	+	1	NA	NA	NA	-21	NM_001081046	70894	Mm.87320	NM_001081046	ENSMUSG00000020690	Efcab3	4921510J17Rik	EF-hand calcium binding domain 3	protein-coding	0.035000	0.437811	
mm_136724.1	chr17	8235968	8236168	+	1	NA	NA	NA	25	NM_001190333	12458	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	0.010000	0.487562	
mm_75594.1	chr8	61663721	61663921	-	1	NA	NA	NA	-72652	NM_001293774	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.010000	0.457711	
mm_132004.1	chr16	25752007	25752207	+	1	NA	NA	NA	-49809	NM_001127263	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.030000	0.542289	
mm_4854.1	chr1	187608660	187608860	+	1	NA	NA	NA	-246	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.040000	0.557214	
mm_24470.1	chr3	90659556	90659756	+	1	NA	NA	NA	5354	NM_199422	381493	Mm.291525	NM_199422	ENSMUSG00000063767	S100a7a	AY465109|Gm1020|S100A7L1|S100A7f|S100a15|S100a15a|S100a17l1	S100 calcium binding protein A7A	protein-coding	0.000000	0.497512	
mm_79177.1	chr9	47893215	47893415	+	1	NA	NA	NA	-75107	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.020000	0.492537	
mm_6346.1	chr1	71641193	71641393	-	1	NA	NA	NA	11941	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.040000	0.512438	
mm_58707.1	chr7	12965868	12966068	+	1	NA	NA	NA	104	NM_178732	243834	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	0.055000	0.567164	
mm_106951.1	chr12	8790620	8790820	+	1	NA	NA	NA	19324	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.040000	0.616915	
mm_2262.1	chr1	91144979	91145179	+	1	NA	NA	NA	-24	NM_001033408	329207	Mm.295940	NM_001033408	ENSMUSG00000070732	Rbm44	Gm817	RNA binding motif protein 44	protein-coding	0.045000	0.597015	-99(GCATTTAAGCCC,+,0.00)
mm_64237.1	chr7	141700407	141700607	+	1	NA	NA	NA	10167	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.035000	0.577114	
mm_169788.1	chr16	13780322	13780522	-	1	NA	NA	NA	-277	NM_001039521	106298	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	0.025000	0.552239	
mm_105808.1	chr11	110252317	110252517	-	1	NA	NA	NA	-641	NM_001166557	76184	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	0.010000	0.378109	
mm_109599.1	chr12	112678713	112678913	+	1	NA	NA	NA	-27	NM_001100460	382639	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0.150000	0.781095	
mm_23896.1	chr3	83031576	83031776	+	1	NA	NA	NA	5523	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.040000	0.472637	
mm_83137.1	chr9	40437179	40437379	-	1	NA	NA	NA	18485	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.010000	0.432836	
mm_26870.1	chr3	17326271	17326471	-	1	NA	NA	NA	-463550	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.020000	0.402985	
mm_292.1	chr1	23256177	23256377	+	1	NA	NA	NA	-15992	NR_029533	387225		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0.160000	0.825871	
mm_168169.1	chr10	53900266	53900466	-	1	NA	NA	NA	-149457	NM_001081428	75906	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0.020000	0.502488	
mm_131944.1	chr16	24179326	24179526	+	1	NA	NA	NA	-190814	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.000000	0.417910	
mm_22070.1	chr2	168741760	168741960	-	1	NA	NA	NA	-60	NM_015731	11981	Mm.330819	NM_015731	ENSMUSG00000027546	Atp9a	IIa	ATPase, class II, type 9A	protein-coding	0.210000	0.875622	
mm_146241.1	chr18	77196092	77196292	+	1	NA	NA	NA	10345	NM_013666	225742	Mm.365178	NM_013666	ENSMUSG00000025425	St8sia5	ST8SiaV|Siat8e	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding	0.000000	0.358209	
mm_166557.1	chr6	42597359	42597559	-	1	NA	NA	NA	-87	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.020000	0.437811	
mm_125183.1	chr15	32244770	32244970	+	1	NA	NA	NA	57	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding	0.100000	0.726368	
mm_105883.1	chr11	114930515	114930715	-	1	NA	NA	NA	3771	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.010000	0.432836	
mm_152568.1	chr19	11588970	11589170	-	1	NA	NA	NA	15734	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.005000	0.398010	-95(AACTATAAAAGT,-,0.00)
mm_50014.1	chr6	41113274	41113474	+	1	NA	NA	NA	-77865	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.492537	
mm_83528.1	chr9	46230086	46230286	-	1	NA	NA	NA	1556	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.065000	0.606965	
mm_83278.1	chr9	43071275	43071475	-	1	NA	NA	NA	34343	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0.010000	0.477612	
mm_46571.1	chr5	107289195	107289395	-	1	NA	NA	NA	300	NM_011578	21814	Mm.200775	NM_011578	ENSMUSG00000029287	Tgfbr3	1110036H20Rik|AU015626|AW215636|TBRIII	transforming growth factor, beta receptor III	protein-coding	0.135000	0.716418	
mm_124736.1	chr15	6580891	6581091	+	1	NA	NA	NA	1144	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.025000	0.557214	
mm_129176.1	chr15	76273732	76273932	-	1	NA	NA	NA	-3993	NR_045747	100038659	Mm.448549	NR_045747		Mirt2	ENSMUSG00000075583|Gm10872|Gm24562	myocardial infraction associated transcript 2	ncRNA	0.005000	0.412935	
mm_80035.1	chr9	68882749	68882949	+	1	NA	NA	NA	117503	NR_033299	320440	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.005000	0.427861	
mm_106515.1	chr11	120531684	120531884	-	1	NA	NA	NA	1057	NM_008101	14527	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.030000	0.552239	
mm_160547.1	chr9	44725988	44726188	-	1	NA	NA	NA	9110	NM_153537	102693	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.020000	0.587065	
mm_15500.1	chr2	157914536	157914736	+	1	NA	NA	NA	-17	NM_198627	277432	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0.155000	0.805970	
mm_117204.1	chr13	64066186	64066386	-	1	NA	NA	NA	22915	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.000000	0.497512	37(CCACATAAAAAG,-,0.00)
mm_124420.1	chr14	118052144	118052344	-	1	NA	NA	NA	2	NM_010024	13190	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	0.025000	0.567164	
mm_144889.1	chr18	36939024	36939224	+	1	NA	NA	NA	-81	NM_198117	353234	Mm.308500	NM_198117	ENSMUSG00000104148	Pcdha2	-	protocadherin alpha 2	protein-coding	0.020000	0.373134	
mm_61070.1	chr7	51510926	51511126	+	1	NA	NA	NA	-3	NR_073508	233246	Mm.254431	NM_177694	ENSMUSG00000055489	Ano5	9330162L24|Gdd1|Tmem16e	anoctamin 5	protein-coding	0.045000	0.601990	
mm_49463.1	chr6	29419897	29420097	+	1	NA	NA	NA	-13156	NM_001081185	68794	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	0.005000	0.462687	
mm_95857.1	chr11	57973316	57973516	+	1	NA	NA	NA	-35648	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.015000	0.621891	
mm_39456.1	chr5	17574605	17574805	+	1	NA	NA	NA	-111	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.160000	0.781095	
mm_64482.1	chr7	143065689	143065889	+	1	NA	NA	NA	-3579	NM_020285	56844	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.000000	0.492537	
mm_67025.1	chr7	66377133	66377333	-	1	NA	NA	NA	4491	NR_106024	102465640		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.010000	0.517413	
mm_110942.1	chr12	76612554	76612754	-	1	NA	NA	NA	-64729	NR_046044	100504549	Mm.440349	NR_046044		AI463170	-	expressed sequence AI463170	ncRNA	0.035000	0.577114	
mm_16737.1	chr2	9304762	9304962	-	1	NA	NA	NA	115347	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.000000	0.263682	
mm_134677.1	chr16	22411666	22411866	-	1	NA	NA	NA	27804	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.015000	0.587065	
mm_5820.1	chr1	52727162	52727362	-	1	NA	NA	NA	56	NM_178081	98682	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	0.130000	0.751244	
mm_11786.1	chr2	40958232	40958432	+	1	NA	NA	NA	1489236	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.015000	0.343284	
mm_85574.1	chr9	107289375	107289575	-	1	NA	NA	NA	-79	NM_001316691	102626	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0.025000	0.557214	
mm_120549.1	chr14	67716162	67716362	+	1	NA	NA	NA	164	NM_001285933	105440	Mm.6720	NM_134073	ENSMUSG00000034327	Kctd9	-	potassium channel tetramerisation domain containing 9	protein-coding	0.140000	0.766169	
mm_31501.1	chr4	53341319	53341519	+	1	NA	NA	NA	-71187	NR_033139	381524	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0.010000	0.512438	-33(CCTTTAATACCC,+,0.00)
mm_27963.1	chr3	80688187	80688387	-	1	NA	NA	NA	114504	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.020000	0.402985	
mm_128690.1	chr15	61985066	61985266	-	1	NA	NA	NA	-175	NM_001177354	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.085000	0.616915	
mm_102025.1	chr11	51650732	51650932	-	1	NA	NA	NA	-122	NR_027958	97775	Mm.220299	NM_175289	ENSMUSG00000052563	D930048N14Rik	AI315703|R75254	RIKEN cDNA D930048N14 gene	ncRNA	0.130000	0.746269	
mm_72488.1	chr8	83690964	83691164	+	1	NA	NA	NA	2997	NM_001199593	320795	Mm.213000	NM_177262	ENSMUSG00000057672	Pkn1	DBK|F730027O18Rik|PAK1|PRK1|Pkn|Prkcl1|Stk3	protein kinase N1	protein-coding	0.020000	0.572139	
mm_151786.1	chr19	5388535	5388735	-	1	NA	NA	NA	68	NM_016882	20227	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	0.140000	0.686567	
mm_51519.1	chr6	83156326	83156526	+	1	NA	NA	NA	22	NM_027948	71837	Mm.17621	NM_027948	ENSMUSG00000030030	1700003E16Rik	AU041756	RIKEN cDNA 1700003E16 gene	protein-coding	0.105000	0.666667	
mm_139512.1	chr17	56468963	56469163	+	1	NA	NA	NA	-6842	NM_001252456	19280	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.035000	0.597015	
mm_148453.1	chr19	4000313	4000513	+	1	NA	NA	NA	-167	NM_025529	66387	Mm.259222	NM_025529	ENSMUSG00000024869	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	0.065000	0.641791	
mm_46932.1	chr5	114744732	114744932	-	1	NA	NA	NA	25317	NR_105995	102465622		NR_105995	ENSMUSG00000098656	Mir7028	Gm27674|mmu-mir-7028	microRNA 7028	ncRNA	0.015000	0.597015	32(AGCTCTAAAGGG,-,0.00)
mm_15305.1	chr2	155386905	155387105	+	1	NA	NA	NA	5149	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.005000	0.502488	
mm_43119.1	chr5	124725028	124725228	+	1	NA	NA	NA	43	NM_019536	56087	Mm.261014	NM_019536	ENSMUSG00000038011	Dnah10	Dnahc10	dynein, axonemal, heavy chain 10	protein-coding	0.100000	0.696517	
mm_80369.1	chr9	75338250	75338450	+	1	NA	NA	NA	-9408	NM_013479	12049	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	0.010000	0.477612	
mm_142228.1	chr17	37480676	37480876	-	1	NA	NA	NA	2753	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.005000	0.383085	
mm_83394.1	chr9	44713107	44713307	-	1	NA	NA	NA	21991	NM_153537	102693	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.010000	0.562189	
mm_45921.1	chr5	89441561	89441761	-	1	NA	NA	NA	16237	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.010000	0.383085	
mm_58122.1	chr6	140041338	140041538	-	1	NA	NA	NA	-21	NM_054066	114875	Mm.50808	NM_054066	ENSMUSG00000030230	Plcz1	1700041H07Rik|PLCzeta	phospholipase C, zeta 1	protein-coding	0.015000	0.427861	
mm_125617.1	chr15	61987407	61987607	+	1	NA	NA	NA	2166	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.060000	0.567164	
mm_145386.1	chr18	57133268	57133468	+	1	NA	NA	NA	278	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.060000	0.671642	
mm_110900.1	chr12	75669420	75669620	-	1	NA	NA	NA	17	NM_028203	72338	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0.065000	0.616915	
mm_40804.1	chr5	69556877	69557077	+	1	NA	NA	NA	53	NM_001310631	231279	Mm.21105	NM_172711	ENSMUSG00000029208	Guf1	4631409J12|AA407526|EF-4	GUF1 homolog, GTPase	protein-coding	0.135000	0.711443	
mm_116284.1	chr13	34993794	34993994	-	1	NA	NA	NA	250	NM_011868	23986	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0.090000	0.597015	
mm_26014.1	chr3	135347992	135348192	+	1	NA	NA	NA	55	NM_028946	74446	Mm.85000	NM_028946	ENSMUSG00000050150	Slc9b1	1700094G20Rik|4933424B12Rik|4933425K02Rik|Nhedc1|mtsNHE	solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1	protein-coding	0.045000	0.592040	
mm_72524.1	chr8	83976789	83976989	+	1	NA	NA	NA	6	NM_001277898	18747	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0.005000	0.562189	
mm_50403.1	chr6	48727983	48728183	+	1	NA	NA	NA	9462	NM_146167	231932	Mm.30479	NM_146167	ENSMUSG00000043931	Gimap7	IAN7|Ian3	GTPase, IMAP family member 7	protein-coding	0.020000	0.492537	
mm_158043.1	chrX	98890475	98890675	-	1	NA	NA	NA	450	NM_052976	94190	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	0.070000	0.691542	
mm_147619.1	chr18	57552243	57552443	-	1	NA	NA	NA	52	NR_027944	75084	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0.025000	0.507463	-84(TCTTTTAAGGTC,+,0.00)
mm_78741.1	chr9	41600041	41600241	+	1	NA	NA	NA	18215	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA	0.000000	0.502488	
mm_58358.1	chr6	148212240	148212440	-	1	NA	NA	NA	34	NM_026168	67456	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	0.080000	0.577114	
mm_55709.1	chr6	72958340	72958540	-	1	NA	NA	NA	43	NM_025284	19240	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.130000	0.726368	6(GTGTATATAAGA,-,0.00)
mm_118959.1	chr14	27428732	27428932	+	1	NA	NA	NA	-15	NM_028945	218850	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0.120000	0.696517	
mm_101234.1	chr11	20542801	20543001	-	1	NA	NA	NA	-352	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.070000	0.656716	
mm_124426.1	chr14	118236032	118236232	-	1	NA	NA	NA	-100	NR_131969	105245869	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	0.080000	0.656716	
mm_160850.1	chr11	53634758	53634958	-	1	NA	NA	NA	-156	NM_008355	16163	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	0.015000	0.432836	
mm_171454.1	chr4	145510674	145510874	+	1	NA	NA	NA	15	NM_001324553	101056073	Mm.276881	NM_001324553	ENSMUSG00000078503	LOC101056073	-	zinc finger protein 501-like	protein-coding	0.020000	0.502488	
mm_36114.1	chr4	58893571	58893771	-	1	NA	NA	NA	19054	NM_172381	230249	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|mKIAA0368	expressed sequence AI314180	protein-coding	0.000000	0.363184	
mm_28835.1	chr3	96579827	96580027	-	1	NA	NA	NA	-13126	NR_040409	100038464	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	ENSMUSG00000074398|OTTMUSG00000021867	predicted gene 15441	ncRNA	0.020000	0.532338	
mm_3893.1	chr1	161396536	161396736	+	1	NA	NA	NA	1198	NM_009452	22164	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	0.030000	0.542289	
mm_93749.1	chr10	120170238	120170438	-	1	NA	NA	NA	31199	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.005000	0.398010	
mm_37136.1	chr4	116820806	116821006	-	1	NA	NA	NA	602	NM_146256	242642	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	0.080000	0.641791	
mm_170182.1	chr17	60985025	60985225	-	1	NA	NA	NA	1896192	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.025000	0.318408	
mm_51847.1	chr6	90363288	90363488	+	1	NA	NA	NA	-6106	NM_173002	80292	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	0.015000	0.537313	
mm_101107.1	chr11	11932749	11932949	-	1	NA	NA	NA	-34705	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.020000	0.412935	
mm_139338.1	chr17	49454846	49455046	+	1	NA	NA	NA	26582	NM_020042	56738	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.005000	0.492537	
mm_49353.1	chr6	21986802	21987002	+	1	NA	NA	NA	992	NM_001081351	214642	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.050000	0.567164	
mm_6242.1	chr1	67038655	67038855	-	1	NA	NA	NA	79	NM_001190984	14768	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	0.125000	0.726368	
mm_26489.1	chr3	145118809	145119009	+	1	NA	NA	NA	309	NM_025714	52184	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	0.095000	0.681592	
mm_98896.1	chr11	97921345	97921545	+	1	NA	NA	NA	-37291	NM_001081435	72973	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	0.025000	0.577114	
mm_41683.1	chr5	100205836	100206036	+	1	NA	NA	NA	-4756	NR_040679	69571	Mm.396412	NR_040679	ENSMUSG00000100157	2310034O05Rik	-	RIKEN cDNA 2310034O05 gene	ncRNA	0.020000	0.527363	
mm_145661.1	chr18	61130740	61130940	+	1	NA	NA	NA	13372	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.010000	0.482587	
mm_20329.1	chr2	127511038	127511238	-	1	NA	NA	NA	10254	NM_001291005	56461	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0.015000	0.626866	
mm_157081.1	chrX	9435819	9436019	-	1	NA	NA	NA	33405	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.422886	
mm_607.1	chr1	39904043	39904243	+	1	NA	NA	NA	3230	NM_008696	26921	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.010000	0.353234	
mm_110365.1	chr12	40107019	40107219	-	1	NA	NA	NA	27109	NM_009132	20259	Mm.2416	NM_009132	ENSMUSG00000002565	Scin	AW545522|adseverin	scinderin	protein-coding	0.000000	0.487562	-78(GCTCTTATACAC,+,0.00)
mm_142617.1	chr17	46858596	46858796	-	1	NA	NA	NA	-27283	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.085000	0.467662	
mm_110849.1	chr12	73102448	73102648	-	1	NA	NA	NA	10697	NM_011382	20474	Mm.249575	NM_011382	ENSMUSG00000034460	Six4	AI047561|AREC3|TrexBF	sine oculis-related homeobox 4	protein-coding	0.005000	0.298507	
mm_22995.1	chr3	34019855	34020055	+	1	NA	NA	NA	-124	NM_001113189	14359	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0.170000	0.830846	
mm_100990.1	chr11	7232091	7232291	-	1	NA	NA	NA	-18268	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding	0.015000	0.507463	
mm_64022.1	chr7	140315673	140315873	+	1	NA	NA	NA	-6928	NM_146956	258958	Mm.347648	NM_146956	ENSMUSG00000061489	Olfr525	MOR251-2	olfactory receptor 525	protein-coding	0.020000	0.502488	-62(CACCAGAAAAGG,-,0.00)
mm_80367.1	chr9	75337311	75337511	+	1	NA	NA	NA	-10347	NM_013479	12049	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	0.015000	0.407960	
mm_117860.1	chr13	98815320	98815520	-	1	NA	NA	NA	29	NM_172591	218503	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.105000	0.691542	
mm_14545.1	chr2	132846752	132846952	+	1	NA	NA	NA	186	NM_001024385	66586	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	0.125000	0.776119	
mm_75303.1	chr8	41112760	41112960	-	1	NA	NA	NA	1807	NM_001286413	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.015000	0.512438	
mm_123937.1	chr14	73368302	73368502	-	1	NA	NA	NA	16869	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.045000	0.522388	
mm_153215.1	chr19	34747202	34747402	-	1	NA	NA	NA	-191	NM_172838	240638	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0.095000	0.721393	
mm_73070.1	chr8	94434291	94434491	+	1	NA	NA	NA	712	NR_015514	320377	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0.075000	0.616915	
mm_58844.1	chr7	16842893	16843093	+	1	NA	NA	NA	-72	NM_178900	101540	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.080000	0.616915	
mm_2684.1	chr1	127306562	127306762	+	1	NA	NA	NA	101676	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.025000	0.547264	
mm_84530.1	chr9	67049110	67049310	-	1	NA	NA	NA	3	NM_001164255	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.075000	0.606965	
mm_66377.1	chr7	43672149	43672349	-	1	NA	NA	NA	218	NM_145582	233189	Mm.26514	NM_145582	ENSMUSG00000038888	Ctu1	Atpbd3|BC005752	cytosolic thiouridylase subunit 1	protein-coding	0.030000	0.502488	
mm_119199.1	chr14	32771457	32771657	+	1	NA	NA	NA	-14406	NM_001163616	69069	Mm.261609	NM_001163616	ENSMUSG00000041707	1810011H11Rik	4733401I05Rik	RIKEN cDNA 1810011H11 gene	protein-coding	0.015000	0.527363	
mm_32330.1	chr4	104367245	104367445	+	1	NA	NA	NA	-193	NR_104385	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding	0.170000	0.751244	
mm_149108.1	chr19	8953773	8953973	+	1	NA	NA	NA	41	NM_197993	70044	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	0.095000	0.537313	
mm_100504.1	chr11	120491778	120491978	+	1	NA	NA	NA	41	NM_013770	27376	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0.110000	0.706468	-91(GCCTCTTTAAGA,-,0.00)
mm_39680.1	chr5	25759862	25760062	+	1	NA	NA	NA	-11	NM_001310504	242894	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	0.075000	0.691542	
mm_132255.1	chr16	32752142	32752342	+	1	NA	NA	NA	16356	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.005000	0.492537	
mm_129869.1	chr15	83385686	83385886	-	1	NA	NA	NA	-18489	NR_027980	69291	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0.005000	0.532338	62(ACCTCTATAAGG,-,0.00)
mm_73333.1	chr8	105302450	105302650	+	1	NA	NA	NA	-3051	NM_172760	234683	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	0.005000	0.358209	
mm_140957.1	chr17	24632493	24632693	-	1	NA	NA	NA	34	NM_011647	22084	Mm.30435	NM_011647	ENSMUSG00000002496	Tsc2	Nafld|Tcs2	tuberous sclerosis 2	protein-coding	0.095000	0.671642	
mm_10906.1	chr2	25341617	25341817	+	1	NA	NA	NA	8974	NM_001029983	227619	Mm.270798	NM_001029983	ENSMUSG00000036646	Man1b1	E430019H13Rik|ERMan1|Gm108|MANA-ER	mannosidase, alpha, class 1B, member 1	protein-coding	0.010000	0.542289	
mm_42439.1	chr5	115429602	115429802	+	1	NA	NA	NA	17	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.185000	0.835821	
mm_168518.1	chr11	58199519	58199719	+	1	NA	NA	NA	63	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.020000	0.597015	
mm_122405.1	chr14	41006797	41006997	-	1	NA	NA	NA	23	NM_001316739	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.000000	0.407960	
mm_164620.1	chr17	31162703	31162903	-	1	NA	NA	NA	2250	NM_009362	21784	Mm.2854	NM_009362	ENSMUSG00000024032	Tff1	Bcei|PS2	trefoil factor 1	protein-coding	0.035000	0.552239	
mm_43112.1	chr5	124552812	124553012	+	1	NA	NA	NA	48	NM_026409	67848	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	0.120000	0.646766	
mm_71526.1	chr8	46852640	46852840	+	1	NA	NA	NA	112995	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.030000	0.532338	
mm_45040.1	chr5	40439858	40440058	-	1	NA	NA	NA	-795327	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.005000	0.497512	
mm_130725.1	chr15	101122237	101122437	-	1	NA	NA	NA	-6185	NM_001277258	11482	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	0.005000	0.517413	
mm_2819.1	chr1	131019748	131019948	+	1	NA	NA	NA	3	NM_010548	16153	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.000000	0.502488	-36(CAGTATAAAAGG,-,0.00)
mm_132866.1	chr16	48611564	48611764	+	1	NA	NA	NA	160292	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.005000	0.517413	
mm_47130.1	chr5	120467224	120467424	-	1	NA	NA	NA	5439	NM_133902	257635	Mm.5162	NM_133902	ENSMUSG00000029596	Sdsl	4432411H13Rik|AI504310|SDH1|SDS-RS1|TDH	serine dehydratase-like	protein-coding	0.015000	0.587065	
mm_172147.1	chr6	37741271	37741471	+	1	NA	NA	NA	-129440	NM_001272064	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.015000	0.592040	-34(CCCTTTATAAGC,+,0.00),-34(CCCTTTATAAGC,-,0.00),-32(CTTTATAAGCAC,+,0.00)
mm_124418.1	chr14	118051952	118052152	-	1	NA	NA	NA	194	NM_010024	13190	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	0.025000	0.417910	
mm_43193.1	chr5	128755035	128755235	+	1	NA	NA	NA	18889	NM_021311	57749	Mm.272720	NM_021311	ENSMUSG00000029423	Piwil1	MIWI	piwi-like RNA-mediated gene silencing 1	protein-coding	0.010000	0.417910	
mm_7750.1	chr1	131097456	131097656	-	1	NA	NA	NA	287	NM_008551	17164	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.140000	0.820896	
mm_86951.1	chr10	24904099	24904299	+	1	NA	NA	NA	-6465	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.010000	0.363184	
mm_165520.1	chr2	174115877	174116077	+	1	NA	NA	NA	5626	NM_213733	228961	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	0.010000	0.567164	
mm_102280.1	chr11	55395757	55395957	-	1	NA	NA	NA	24223	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.030000	0.557214	
mm_82488.1	chr9	18469591	18469791	-	1	NA	NA	NA	3868	NM_028935	72230	Mm.289689	NM_028935	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	0.010000	0.422886	
mm_85877.1	chr9	110989642	110989842	-	1	NA	NA	NA	-29	NM_153100	235636	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	0.000000	0.507463	
mm_110588.1	chr12	56529406	56529606	-	1	NA	NA	NA	-86	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.045000	0.631841	
mm_139990.1	chr17	72871633	72871833	+	1	NA	NA	NA	35029	NM_027166	383295	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee-like 5 (Drosophila)	protein-coding	0.010000	0.422886	
mm_12518.1	chr2	72137033	72137233	+	1	NA	NA	NA	82516	NM_001204166	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.000000	0.472637	
mm_114743.1	chr13	83801629	83801829	+	1	NA	NA	NA	62915	NR_029545	723967		NR_029545	ENSMUSG00000065424	Mir9-2	Mirn9-2|mir-9-2|mmu-mir-9-2	microRNA 9-2	ncRNA	0.000000	0.303483	
mm_74221.1	chr8	124021474	124021674	+	1	NA	NA	NA	-265	NM_133966	102162	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	0.090000	0.666667	
mm_52403.1	chr6	113327154	113327354	+	1	NA	NA	NA	278	NM_010957	18294	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0.050000	0.577114	
mm_44037.1	chr5	147500623	147500823	+	1	NA	NA	NA	70143	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.000000	0.288557	
mm_66410.1	chr7	44480682	44480882	-	1	NA	NA	NA	-3735	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.407960	
mm_64933.1	chr7	16286703	16286903	-	1	NA	NA	NA	-8	NM_001136471	243846	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0.090000	0.626866	-59(GACCCTTTAAGG,-,0.00),-57(CCCTTTAAGGCA,+,0.00),-56(CCTTTAAGGCAC,+,0.00)
mm_154067.1	chr19	55718868	55719068	-	1	NA	NA	NA	-16764	NR_045318	77594	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.015000	0.373134	
mm_78465.1	chr9	32541534	32541734	+	1	NA	NA	NA	-182	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.055000	0.572139	
mm_39974.1	chr5	32247359	32247559	+	1	NA	NA	NA	8375	NM_001081407	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0.015000	0.552239	-35(GGGCATAAAAGC,-,0.00)
mm_5386.1	chr1	31016786	31016986	-	1	NA	NA	NA	-67131	NM_011200	19243	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	0.000000	0.368159	
mm_33158.1	chr4	125609854	125610054	+	1	NA	NA	NA	105205	NR_035409	100124641		NR_035409	ENSMUSG00000076033	Mir692-3	Mir692-2b|Mirn692-2b|mmu-mir-692-3	microRNA 692-3	ncRNA	0.020000	0.472637	-3(CCTTTTCAGGCC,+,0.00)
mm_128933.1	chr15	74636665	74636865	-	1	NA	NA	NA	-447	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.010000	0.512438	
mm_118622.1	chr14	21104320	21104520	+	1	NA	NA	NA	28268	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.000000	0.323383	
mm_131131.1	chr16	5902079	5902279	+	1	NA	NA	NA	17386	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.005000	0.427861	
mm_118078.1	chr13	103129522	103129722	-	1	NA	NA	NA	204870	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.010000	0.517413	
mm_131426.1	chr16	14708286	14708486	+	1	NA	NA	NA	2527	NM_011415	20583	Mm.4272	NM_011415	ENSMUSG00000022676	Snai2	Slug|Slugh|Snail2	snail family zinc finger 2	protein-coding	0.005000	0.417910	
mm_95770.1	chr11	54908530	54908730	+	1	NA	NA	NA	5776	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.025000	0.542289	
mm_104689.1	chr11	97775788	97775988	-	1	NA	NA	NA	30	NM_028156	72215	Mm.269049	NM_028156	ENSMUSG00000018543	1700001P01Rik	-	RIKEN cDNA 1700001P01 gene	protein-coding	0.030000	0.482587	
mm_48564.1	chr5	143180706	143180906	-	1	NA	NA	NA	-31	NM_001045482	57782	Mm.320419	NM_021326	ENSMUSG00000061898	Rbak	-	RB-associated KRAB zinc finger	protein-coding	0.090000	0.631841	
mm_130065.1	chr15	89196322	89196522	-	1	NA	NA	NA	52	NM_027081	69440	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	0.115000	0.731343	
mm_132899.1	chr16	48870874	48871074	+	1	NA	NA	NA	-1634	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.010000	0.437811	
mm_56128.1	chr6	87579832	87580032	-	1	NA	NA	NA	10769	NM_021381	58182	Mm.333226	NM_021381	ENSMUSG00000049409	Prokr1	EG-VEGFR1|Gpr73|Pkr1	prokineticin receptor 1	protein-coding	0.000000	0.407960	
mm_103854.1	chr11	83237348	83237548	-	1	NA	NA	NA	13872	NR_015519	100043636	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0.030000	0.487562	
mm_34150.1	chr4	139375727	139375927	+	1	NA	NA	NA	-4832	NM_001160319	69116	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0.010000	0.373134	-72(CCCTTTATGTGC,+,0.00)
mm_99329.1	chr11	101459991	101460191	+	1	NA	NA	NA	6108	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.025000	0.636816	
mm_115082.1	chr13	102691868	102692068	+	1	NA	NA	NA	-1590	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.020000	0.417910	
mm_42517.1	chr5	115544311	115544511	+	1	NA	NA	NA	-15056	NM_007475	11837	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.025000	0.587065	
mm_112149.1	chr12	113259934	113260134	-	1	NA	NA	NA	74131	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.035000	0.547264	
mm_119483.1	chr14	47360688	47360888	+	1	NA	NA	NA	-13072	NM_010705	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.010000	0.507463	
mm_62056.1	chr7	92447466	92447666	+	1	NA	NA	NA	-113583	NM_025515	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.015000	0.527363	
mm_87691.1	chr10	59403582	59403782	+	1	NA	NA	NA	-3	NM_023530	69836	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	0.045000	0.587065	
mm_73814.1	chr8	117401074	117401274	+	1	NA	NA	NA	-51849	NR_106045	102466801		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.010000	0.487562	
mm_96558.1	chr11	68967547	68967747	+	1	NA	NA	NA	-484	NM_028048	71998	Mm.298622	NM_028048	ENSMUSG00000018740	Slc25a35	1810012H11Rik	solute carrier family 25, member 35	protein-coding	0.045000	0.567164	
mm_169822.1	chr16	22294929	22295129	+	1	NA	NA	NA	-29024	NM_001330555	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding	0.070000	0.646766	
mm_167100.1	chr7	110166143	110166343	-	1	NA	NA	NA	44184	NM_009516	22390	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.005000	0.477612	-100(GCTTTAAAAGGA,+,0.00)
mm_37990.1	chr4	133632152	133632352	-	1	NA	NA	NA	1177	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.015000	0.507463	
mm_26636.1	chr3	153078183	153078383	+	1	NA	NA	NA	73825	NR_108044	75001		NR_108044		4930482G09Rik	-	RIKEN cDNA 4930482G09 gene	ncRNA	0.040000	0.542289	
mm_171472.1	chr4	145781422	145781622	+	1	NA	NA	NA	-21	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.040000	0.517413	
mm_37946.1	chr4	133159196	133159396	-	1	NA	NA	NA	28663	NM_153423	242687	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.010000	0.482587	
mm_54691.1	chr6	39445312	39445512	-	1	NA	NA	NA	-25043	NM_018810	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.005000	0.348259	
mm_63945.1	chr7	139834212	139834412	+	1	NA	NA	NA	138	NM_177469	52389	Mm.39863	NM_177469	ENSMUSG00000025475	Adgra1	2900059M17Rik|D7Ertd680e|Gpr123	adhesion G protein-coupled receptor A1	protein-coding	0.055000	0.626866	
mm_57428.1	chr6	124914021	124914221	-	1	NA	NA	NA	-2416	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.025000	0.631841	
mm_133356.1	chr16	84677502	84677702	+	1	NA	NA	NA	-2187	NR_040537	78023	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0.015000	0.398010	-32(CTGTTTAAAAGG,-,0.00),-30(GTTTAAAAGGCC,+,0.00)
mm_81547.1	chr9	110281209	110281409	+	1	NA	NA	NA	22	NR_105744	102465959		NR_105744	ENSMUSG00000098973	Mir6236	Gm27547|mmu-mir-6236	microRNA 6236	ncRNA	0.030000	0.477612	
mm_81690.1	chr9	111147936	111148136	+	1	NA	NA	NA	29925	NM_001164838	71268	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.005000	0.273632	
mm_104332.1	chr11	93996657	93996857	-	1	NA	NA	NA	666	NM_027569	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.060000	0.686567	
mm_50615.1	chr6	49823636	49823836	+	1	NA	NA	NA	1026	NM_023456	109648	Mm.154796	NM_023456	ENSMUSG00000029819	Npy	0710005A05Rik	neuropeptide Y	protein-coding	0.065000	0.592040	
mm_102363.1	chr11	58386687	58386887	-	1	NA	NA	NA	6141	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.030000	0.442786	
mm_124633.1	chr15	4035366	4035566	+	1	NA	NA	NA	-8060	NR_028266	414066	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	0.020000	0.417910	
mm_74957.1	chr8	26057981	26058181	-	1	NA	NA	NA	-24528	NR_110583	76604	Mm.437190	NR_110583	ENSMUSG00000085437	1700047A11Rik	4930554C15Rik	RIKEN cDNA 1700047A11 gene	ncRNA	0.015000	0.522388	
mm_11689.1	chr2	35661233	35661433	+	1	NA	NA	NA	-30661	NM_001001602	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.195000	0.865672	
mm_111300.1	chr12	85485887	85486087	-	1	NA	NA	NA	12086	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.070000	0.651741	
mm_49615.1	chr6	30747534	30747734	+	1	NA	NA	NA	6335	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.010000	0.398010	
mm_39649.1	chr5	24685717	24685917	+	1	NA	NA	NA	2	NM_001305264	53312	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0.075000	0.616915	
mm_103986.1	chr11	84828840	84829040	-	1	NA	NA	NA	63	NM_177564	192970	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	0.075000	0.661692	
mm_132886.1	chr16	48842382	48842582	+	1	NA	NA	NA	-70	NM_020509	57262	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0.005000	0.422886	
mm_252.1	chr1	19237312	19237512	+	1	NA	NA	NA	25358	NM_001025305	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.025000	0.497512	
mm_122272.1	chr14	34363138	34363338	-	1	NA	NA	NA	-7845	NM_183278	69134	Mm.27156	NM_183278	ENSMUSG00000043681	Fam25c	2200001I15Rik|Fam25	family with sequence similarity 25, member C	protein-coding	0.015000	0.572139	-26(GCTCAAAAAGGC,+,0.00)
mm_67562.1	chr7	81862427	81862627	-	1	NA	NA	NA	-160	NM_001291282	107769	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.015000	0.552239	
mm_20922.1	chr2	150840073	150840273	-	1	NA	NA	NA	53377	NM_153781	110078	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.025000	0.601990	
mm_136036.1	chr16	77421637	77421837	-	1	NA	NA	NA	92409	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.030000	0.537313	
mm_76238.1	chr8	83574740	83574940	-	1	NA	NA	NA	8082	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.030000	0.606965	
mm_98423.1	chr11	94644303	94644503	+	1	NA	NA	NA	9351	NM_177752	268465	Mm.358937	NM_177752	ENSMUSG00000039055	Eme1	6820428D13	essential meiotic structure-specific endonuclease 1	protein-coding	0.020000	0.502488	
mm_94305.1	chr11	4174966	4175166	+	1	NA	NA	NA	-11767	NM_134023	103724	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.010000	0.527363	-40(TGCTTTTTAGGG,-,0.00)
mm_74525.1	chr8	9545095	9545295	-	1	NA	NA	NA	225828	NM_173446	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding	0.005000	0.348259	
mm_131159.1	chr16	6935502	6935702	+	1	NA	NA	NA	-134233	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.000000	0.407960	
mm_169085.1	chr13	35991438	35991638	-	1	NA	NA	NA	23632	NM_029628	76487	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	0.040000	0.582090	
mm_32147.1	chr4	99715528	99715728	+	1	NA	NA	NA	-2	NM_001081264	320438	Mm.32408	NM_001081264	ENSMUSG00000073792	Alg6	E230028F23Rik	asparagine-linked glycosylation 6 (alpha-1,3,-glucosyltransferase)	protein-coding	0.100000	0.691542	
mm_14192.1	chr2	127086372	127086572	+	1	NA	NA	NA	15815	NM_026678	109778	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0.020000	0.457711	
mm_23925.1	chr3	83766216	83766416	+	1	NA	NA	NA	-5	NM_009144	20319	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0.085000	0.681592	
mm_120709.1	chr14	71856614	71856814	+	1	NA	NA	NA	5	NR_046274	74667	Mm.159286	NR_046274		4930434J06Rik	-	RIKEN cDNA 4930434J06 gene	ncRNA	0.000000	0.432836	
mm_139985.1	chr17	72837540	72837740	+	1	NA	NA	NA	936	NM_027166	383295	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee-like 5 (Drosophila)	protein-coding	0.095000	0.701493	
mm_158838.1	chrX	168673762	168673962	-	1	NA	NA	NA	40	NM_010832	17692	Mm.24248	NM_010832	ENSMUSG00000031358	Msl3	AU018931|Msl31|Msl3l1	male-specific lethal 3 homolog (Drosophila)	protein-coding	0.115000	0.711443	
mm_24672.1	chr3	94786630	94786830	+	1	NA	NA	NA	-215	NM_001037711	70737	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	0.075000	0.666667	
mm_7400.1	chr1	118982479	118982679	-	1	NA	NA	NA	28359	NR_105764	102465176		NR_105764	ENSMUSG00000098273	Mir6346	Gm27829|mmu-mir-6346	microRNA 6346	ncRNA	0.030000	0.621891	
mm_103049.1	chr11	69805545	69805745	-	1	NA	NA	NA	-21	NM_001033433	380705	Mm.490673	NM_001033433	ENSMUSG00000089876	Tmem102	4632403M07Rik|Cbap|Tmem102-ps	transmembrane protein 102	protein-coding	0.040000	0.522388	
mm_14235.1	chr2	127691737	127691937	+	1	NA	NA	NA	-35142	NM_001171187	17153	Mm.39040	NM_010762	ENSMUSG00000027375	Mal	Mpv17|Vip17	myelin and lymphocyte protein, T cell differentiation protein	protein-coding	0.035000	0.507463	
mm_67205.1	chr7	74302684	74302884	-	1	NA	NA	NA	251996	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.010000	0.432836	
mm_147934.1	chr18	66005989	66006189	-	1	NA	NA	NA	-3454	NM_001172062	70361	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	0.000000	0.467662	
mm_78527.1	chr9	34647467	34647667	+	1	NA	NA	NA	158836	NM_001190911	67703	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kin of IRRE like 3 (Drosophila)	protein-coding	0.000000	0.363184	
mm_77026.1	chr8	108876897	108877097	-	1	NA	NA	NA	-59863	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.010000	0.522388	
mm_151586.1	chr19	61227398	61227598	+	1	NA	NA	NA	920	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.040000	0.572139	72(GCTTATATGTGG,+,0.00)
mm_69992.1	chr7	142383418	142383618	-	1	NA	NA	NA	4352	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.030000	0.492537	
mm_119364.1	chr14	41116998	41117198	+	1	NA	NA	NA	12065	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.000000	0.422886	
mm_162655.1	chr10	4266026	4266226	+	1	NA	NA	NA	-203	NM_031185	83397	Mm.27481	NM_031185	ENSMUSG00000038587	Akap12	AI317366|SSeCKS|Srcs5|Tsga12	A kinase (PRKA) anchor protein (gravin) 12	protein-coding	0.025000	0.587065	18(CCTTTAATGACC,+,0.00)
mm_132577.1	chr16	38244851	38245051	+	1	NA	NA	NA	49873	NM_010936	18171	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0.010000	0.388060	-38(CACCATATAAGC,-,0.00)
mm_116962.1	chr13	56152804	56153004	-	1	NA	NA	NA	-17354	NM_001159513	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.005000	0.497512	52(TCTTTTATGTGC,+,0.00)
mm_86646.1	chr10	16584142	16584342	+	1	NA	NA	NA	511540	NR_038020	100504235	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.005000	0.323383	
mm_21844.1	chr2	165851976	165852176	-	1	NA	NA	NA	6097	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.040000	0.522388	
mm_69086.1	chr7	127016917	127017117	-	1	NA	NA	NA	335	NM_030240	67278	Mm.345385	NM_030240	ENSMUSG00000030680	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0.035000	0.582090	
mm_137899.1	chr17	31681592	31681792	+	1	NA	NA	NA	3761	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.010000	0.532338	
mm_98981.1	chr11	98740821	98741021	+	1	NA	NA	NA	-864	NM_178060	21833	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.055000	0.527363	
mm_24227.1	chr3	88913918	88914118	+	1	NA	NA	NA	-68	NM_144898	229524	Mm.440405	NM_144898	ENSMUSG00000068922	Msto1	BC008103|mst	misato 1, mitochondrial distribution and morphology regulator	protein-coding	0.095000	0.641791	
mm_41491.1	chr5	92137818	92138018	+	1	NA	NA	NA	-20	NM_019490	56041	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0.130000	0.756219	
mm_148234.1	chr18	80469560	80469760	-	1	NA	NA	NA	7	NM_026295	67655	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.150000	0.726368	
mm_101689.1	chr11	40695115	40695315	-	1	NA	NA	NA	-12	NM_001199274	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.020000	0.393035	
mm_156227.1	chrX	135800800	135801000	+	1	NA	NA	NA	-38134	NM_001163016	245607	Mm.489763	NM_001163015	ENSMUSG00000072966	Gprasp2	5330440H13Rik|GASP-2|GASP2|Prpl5	G protein-coupled receptor associated sorting protein 2	protein-coding	0.005000	0.487562	
mm_38256.1	chr4	136819441	136819641	-	1	NA	NA	NA	16471	NM_001290753	13844	Mm.250981	NM_010142	ENSMUSG00000028664	Ephb2	Cek5|Drt|ETECK|Erk|Hek5|Nuk|Prkm5|Qek5|Sek3|Tyro5	Eph receptor B2	protein-coding	0.005000	0.363184	
mm_9462.1	chr1	172894935	172895135	-	1	NA	NA	NA	19	NM_011318	20219	Mm.330510	NM_011318	ENSMUSG00000026542	Apcs	Sap	serum amyloid P-component	protein-coding	0.010000	0.398010	
mm_19307.1	chr2	90523013	90523213	-	1	NA	NA	NA	-43939	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.010000	0.432836	
mm_7544.1	chr1	124504073	124504273	-	1	NA	NA	NA	-458614	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.417910	
mm_170155.1	chr17	45596085	45596285	-	1	NA	NA	NA	-283	NM_001199114	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.025000	0.542289	
mm_58105.1	chr6	137630182	137630382	-	1	NA	NA	NA	19003	NM_001271588	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.020000	0.437811	
mm_8271.1	chr1	139560121	139560321	-	1	NA	NA	NA	1	NM_015780	50702	Mm.220362	NM_015780	ENSMUSG00000057037	Cfhr1	AI194696|CFHRB|Cfhl1	complement factor H-related 1	protein-coding	0.005000	0.442786	
mm_7168.1	chr1	92113231	92113431	-	1	NA	NA	NA	67010	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.010000	0.452736	
mm_166385.1	chr5	132383760	132383960	+	1	NA	NA	NA	158483	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.000000	0.482587	
mm_30547.1	chr4	3684741	3684941	+	1	NA	NA	NA	6720	NM_010747	17096	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.000000	0.467662	-42(TTCTTTAAAAGC,-,0.00),-41(TCTTTAAAAGCT,+,0.00)
mm_59964.1	chr7	30428265	30428465	+	1	NA	NA	NA	5061	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.010000	0.442786	
mm_144297.1	chr18	12256131	12256331	+	1	NA	NA	NA	-19845	NM_008720	18145	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	Niemann-Pick type C1	protein-coding	0.005000	0.542289	
mm_158700.1	chrX	162069367	162069567	-	1	NA	NA	NA	89974	NM_001081052	195727	Mm.336313	NM_001081052	ENSMUSG00000059493	Nhs	Gm389|Gm48|Nhs1|Xcat	Nance-Horan syndrome (human)	protein-coding	0.040000	0.417910	
mm_103022.1	chr11	69734937	69735137	-	1	NA	NA	NA	23596	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.005000	0.517413	
mm_152067.1	chr19	6541568	6541768	-	1	NA	NA	NA	1402	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.035000	0.522388	
mm_60562.1	chr7	44481258	44481458	+	1	NA	NA	NA	-3159	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.467662	
mm_162832.1	chr10	81628586	81628786	+	1	NA	NA	NA	146	NM_027480	70615	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0.040000	0.636816	
mm_54181.1	chr6	23839228	23839428	-	1	NA	NA	NA	93	NM_001252106	320405	Mm.259632	NM_153163	ENSMUSG00000017978	Cadps2	A230044C21Rik|Caps-2|Caps2|Cpd2	Ca2+-dependent activator protein for secretion 2	protein-coding	0.195000	0.791045	
mm_54274.1	chr6	29160083	29160283	-	1	NA	NA	NA	4541	NM_133925	68272	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	0.020000	0.492537	
mm_144015.1	chr17	88791887	88792087	-	1	NA	NA	NA	-11	NM_013582	16867	Mm.1644	NM_013582	ENSMUSG00000024107	Lhcgr	Gpcr19-rs1|LH-R|Lhr	luteinizing hormone/choriogonadotropin receptor	protein-coding	0.070000	0.721393	
mm_171335.1	chr3	99907500	99907700	-	1	NA	NA	NA	22183	NM_028892	74362	Mm.55847	NM_028892	ENSMUSG00000027867	Spag17	4931427F14Rik|PF6|Spag17-ps	sperm associated antigen 17	protein-coding	0.035000	0.552239	
mm_5637.1	chr1	40439401	40439601	-	1	NA	NA	NA	-128	NM_001025602	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.015000	0.492537	
mm_57284.1	chr6	124364387	124364587	-	1	NA	NA	NA	-1	NR_131162	72268	Mm.420740	NR_131162		1700027F06Rik	-	RIKEN cDNA 1700027F06 gene	ncRNA	0.015000	0.532338	
mm_137414.1	chr17	26116698	26116898	+	1	NA	NA	NA	3482	NM_021793	60455	Mm.304656	NM_021793	ENSMUSG00000024180	Tmem8	AW490096|M83|Tmem8a	transmembrane protein 8 (five membrane-spanning domains)	protein-coding	0.030000	0.611940	
mm_25118.1	chr3	102010055	102010255	+	1	NA	NA	NA	10	NM_178777	18072	Mm.137286	NM_178777	ENSMUSG00000048540	Nhlh2	6230401I09Rik|Hen2|NSCL2|Nscl-2|bHLHa34	nescient helix loop helix 2	protein-coding	0.000000	0.472637	
mm_171053.1	chr3	103645966	103646166	-	1	NA	NA	NA	2	NM_174875	666468	Mm.102230	NM_174875	ENSMUSG00000079418	Atg4a	AI627006|AV169859|Apg4a|Atg4al|Autl2	autophagy related 4A, cysteine peptidase	protein-coding	0.005000	0.452736	
mm_100598.1	chr11	121204331	121204531	+	1	NA	NA	NA	-2	NM_001001333	238023	Mm.275130	NM_001001333	ENSMUSG00000039307	Hexdc	BC069960	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing	protein-coding	0.095000	0.696517	
mm_47910.1	chr5	134946801	134947001	-	1	NA	NA	NA	33	NM_009903	12740	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	0.030000	0.577114	
mm_73864.1	chr8	118443537	118443737	+	1	NA	NA	NA	160026	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.010000	0.517413	
mm_120266.1	chr14	63122388	63122588	+	1	NA	NA	NA	26	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.095000	0.711443	
mm_146129.1	chr18	74624979	74625179	+	1	NA	NA	NA	-93955	NR_045368	73606	Mm.444734	NR_045368		1700120E14Rik	-	RIKEN cDNA 1700120E14 gene	ncRNA	0.005000	0.547264	
mm_81301.1	chr9	108339194	108339394	+	1	NA	NA	NA	214	NM_001329528	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.085000	0.621891	
mm_58138.1	chr6	141778013	141778213	-	1	NA	NA	NA	78058	NM_030687	28250	Mm.255586	NM_030687	ENSMUSG00000030237	Slco1a4	AI785519|Oatp1a4|Oatp2|Slc21a5	solute carrier organic anion transporter family, member 1a4	protein-coding	0.005000	0.552239	
mm_17765.1	chr2	32788621	32788821	-	1	NA	NA	NA	-4316	NM_025619	227736	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	0.000000	0.487562	
mm_70769.1	chr8	21969731	21969931	+	1	NA	NA	NA	-765	NM_026459	67929	Mm.60688	NM_026459	ENSMUSG00000017049	Ccdc70	1700112P19Rik	coiled-coil domain containing 70	protein-coding	0.010000	0.447761	80(ATCTATATAAAC,-,0.00)
mm_15364.1	chr2	156420941	156421141	+	1	NA	NA	NA	132	NM_001291123	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.115000	0.761194	
mm_146766.1	chr18	17829237	17829437	-	1	NA	NA	NA	-248347	NR_045374	75162	Mm.60874	NR_045374		4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.005000	0.388060	
mm_92636.1	chr10	80335252	80335452	-	1	NA	NA	NA	5207	NM_139292	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.040000	0.601990	
mm_70307.1	chr8	4172774	4172974	+	1	NA	NA	NA	6307	NM_001346730	213027	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	0.000000	0.358209	
mm_62855.1	chr7	114494470	114494670	+	1	NA	NA	NA	68402	NR_110407	244209	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0.010000	0.427861	
mm_91032.1	chr10	18094264	18094464	-	1	NA	NA	NA	38424	NM_001111065	19707	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0.025000	0.467662	
mm_48878.1	chr5	151127440	151127640	-	1	NA	NA	NA	62653	NM_001163493	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.020000	0.497512	-84(CCTCTTAGAGCT,+,0.00)
mm_615.1	chr1	40028697	40028897	+	1	NA	NA	NA	-55971	NM_010555	16178	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.000000	0.383085	
mm_126856.1	chr15	89243223	89243423	+	1	NA	NA	NA	31764	NM_027805	71474	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	0.010000	0.422886	
mm_24032.1	chr3	87617477	87617677	+	1	NA	NA	NA	-1174	NM_001003912	213498	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	B930073M02|E130307F09|PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	0.180000	0.845771	
mm_86569.1	chr10	11356026	11356226	+	1	NA	NA	NA	12681	NM_010146	13853	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	0.005000	0.422886	
mm_120834.1	chr14	75177044	75177244	+	1	NA	NA	NA	40719	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.000000	0.537313	
mm_24932.1	chr3	96559604	96559804	+	1	NA	NA	NA	1747	NM_023719	56338	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.040000	0.532338	
mm_52938.1	chr6	122934001	122934201	+	1	NA	NA	NA	12253	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.005000	0.487562	
mm_83745.1	chr9	51105742	51105942	-	1	NA	NA	NA	-2197	NR_029655	723849		NR_029655	ENSMUSG00000065492	Mir34b	Mirn34b|mir-34b|mmu-mir-34b	microRNA 34b	ncRNA	0.005000	0.363184	
mm_124974.1	chr15	20448956	20449156	+	1	NA	NA	NA	217694	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.015000	0.557214	
mm_101604.1	chr11	34833490	34833690	-	1	NA	NA	NA	51	NM_027411	70385	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0.060000	0.552239	
mm_36015.1	chr4	56916046	56916246	-	1	NA	NA	NA	-20848	NR_029789	723837		NR_029789	ENSMUSG00000065544	Mir32	Mirn32|mir-32|mmu-mir-32	microRNA 32	ncRNA	0.035000	0.532338	48(GTTTTAAAACGC,+,0.00)
mm_163569.1	chr13	29151898	29152098	+	1	NA	NA	NA	135743	NR_045075	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0.010000	0.467662	
mm_65256.1	chr7	19880334	19880534	-	1	NA	NA	NA	7531	NM_177036	319930	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.010000	0.467662	30(ACTTTTAAGGAC,+,0.00)
mm_164947.1	chr19	4238687	4238887	+	1	NA	NA	NA	6372	NR_132280	69745	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0.005000	0.472637	
mm_89155.1	chr10	86032926	86033126	+	1	NA	NA	NA	10872	NM_001347151	69754	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	0.005000	0.432836	2(GTCTTTAAAAGG,-,0.00),3(TCTTTAAAAGGT,+,0.00)
mm_50922.1	chr6	57606787	57606987	+	1	NA	NA	NA	25895	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.005000	0.383085	84(CTTTTTAAACTC,+,0.00)
mm_171357.1	chr4	115791702	115791902	+	1	NA	NA	NA	6988	NM_181040	230649	Mm.109600	NM_181040	ENSMUSG00000028710	Atpaf1	6330547J17Rik|AI593252|ATP11|ATP11p	ATP synthase mitochondrial F1 complex assembly factor 1	protein-coding	0.020000	0.512438	
mm_111397.1	chr12	90738465	90738665	-	1	NA	NA	NA	472	NM_010050	13371	Mm.21389	NM_010050	ENSMUSG00000007682	Dio2	5DII|AI324267|DIOII	deiodinase, iodothyronine, type II	protein-coding	0.015000	0.437811	
mm_60872.1	chr7	45942186	45942386	+	1	NA	NA	NA	13888	NM_001033243	211535	Mm.227539	NM_001033243	ENSMUSG00000040189	Ccdc114	-	coiled-coil domain containing 114	protein-coding	0.015000	0.562189	
mm_28515.1	chr3	92584334	92584534	-	1	NA	NA	NA	4590	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.005000	0.597015	
mm_79970.1	chr9	66468521	66468721	+	1	NA	NA	NA	45972	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.010000	0.393035	
mm_51517.1	chr6	83145813	83146013	+	1	NA	NA	NA	8829	NM_009106	20166	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0.010000	0.592040	
mm_156050.1	chrX	109095321	109095521	+	1	NA	NA	NA	14	NM_019989	56726	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	0.025000	0.537313	
mm_169383.1	chr14	41336608	41336808	+	1	NA	NA	NA	-151510	NM_009160	20390	Mm.1321	NM_009160	ENSMUSG00000021795	Sftpd	AI573415|SP-D|Sfpd|Sftp4	surfactant associated protein D	protein-coding	0.055000	0.676617	
mm_19293.1	chr2	90458081	90458281	-	1	NA	NA	NA	20993	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.045000	0.567164	
mm_107799.1	chr12	64917867	64918067	+	1	NA	NA	NA	56	NM_001025605	217648	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	0.155000	0.825871	
mm_36993.1	chr4	110286499	110286699	-	1	NA	NA	NA	235	NM_010488	15572	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein-coding	0.025000	0.467662	-58(CCTCATAAAAAG,-,0.00)
mm_36273.1	chr4	63729405	63729605	-	1	NA	NA	NA	15608	NM_177371	326623	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0.005000	0.407960	
mm_126692.1	chr15	85017082	85017282	+	1	NA	NA	NA	41	NM_023478	22270	Mm.46214	NM_023478	ENSMUSG00000022435	Upk3a	1110017C07Rik|UP3a|UPIII|Upk3	uroplakin 3A	protein-coding	0.065000	0.641791	
mm_86344.1	chr9	123307883	123308083	-	1	NA	NA	NA	-47194	NM_001002267	72309	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	0.035000	0.502488	-80(CATTTTAGAGGC,+,0.00)
mm_136413.1	chr16	93832926	93833126	-	1	NA	NA	NA	905	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.045000	0.507463	
mm_43704.1	chr5	139256534	139256734	+	1	NA	NA	NA	3137	NM_001163316	67604	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.010000	0.442786	
mm_140571.1	chr17	8923874	8924074	-	1	NA	NA	NA	-64359	NM_025851	66931	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	0.030000	0.601990	
mm_50298.1	chr6	47510075	47510275	+	1	NA	NA	NA	55851	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.000000	0.248756	
mm_3564.1	chr1	150431132	150431332	+	1	NA	NA	NA	34933	NM_021400	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.020000	0.432836	-82(TTCCTTAAAAAG,-,0.00),-80(CCTTAAAAAGAC,+,0.00)
mm_166154.1	chr5	12719579	12719779	+	1	NA	NA	NA	336513	NM_028882	108151	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.000000	0.452736	
mm_21330.1	chr2	157101316	157101516	-	1	NA	NA	NA	14361	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.015000	0.497512	
mm_102092.1	chr11	52283159	52283359	-	1	NA	NA	NA	-245	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.165000	0.825871	
mm_146663.1	chr18	12128535	12128735	-	1	NA	NA	NA	-215	NM_024182	66878	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	0.040000	0.557214	
mm_147354.1	chr18	43360968	43361168	-	1	NA	NA	NA	12204	NM_001136086	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.040000	0.542289	
mm_105501.1	chr11	106160425	106160625	-	1	NA	NA	NA	-383	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.070000	0.606965	
mm_111362.1	chr12	87147347	87147547	-	1	NA	NA	NA	-260	NM_001252556	14874	Mm.29652	NM_010363	ENSMUSG00000021033	Gstz1	MAAI	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	protein-coding	0.105000	0.686567	
mm_140085.1	chr17	75435812	75436012	+	1	NA	NA	NA	7	NM_001166493	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding	0.015000	0.437811	
mm_102445.1	chr11	59787097	59787297	-	1	NA	NA	NA	25	NR_110894	194908	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	0.060000	0.611940	
mm_124497.1	chr14	121878356	121878556	-	1	NA	NA	NA	48	NR_131000	78312	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0.090000	0.621891	
mm_84523.1	chr9	67043807	67044007	-	1	NA	NA	NA	-36	NM_001164253	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.130000	0.751244	
mm_96639.1	chr11	69326251	69326451	+	1	NA	NA	NA	93	NM_010599	16499	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0.055000	0.562189	
mm_55851.1	chr6	83428995	83429195	-	1	NA	NA	NA	12583	NM_183138	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.005000	0.363184	
mm_130306.1	chr15	97020230	97020430	-	1	NA	NA	NA	35626	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.010000	0.417910	-35(CAGCTTAAAAGA,-,0.00)
mm_83523.1	chr9	46229952	46230152	-	1	NA	NA	NA	1422	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.065000	0.597015	
mm_8056.1	chr1	135374927	135375127	-	1	NA	NA	NA	36	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.120000	0.766169	
mm_22741.1	chr3	19956890	19957090	+	1	NA	NA	NA	-64	NM_001276250	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.010000	0.467662	
mm_94244.1	chr11	3310946	3311146	+	1	NA	NA	NA	2046	NR_045708	100302648	Mm.458664	NR_045708	ENSMUSG00000084941	Gm11944	OTTMUSG00000005017	predicted gene 11944	ncRNA	0.005000	0.502488	
mm_28428.1	chr3	90464559	90464759	-	1	NA	NA	NA	1207	NM_008727	18160	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.035000	0.592040	-42(CCTCTTAGAGTC,+,0.00)
mm_157452.1	chrX	42365363	42365563	-	1	NA	NA	NA	-137102	NM_011364	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	0.000000	0.353234	43(TACTATAAGAGG,-,0.00)
mm_105809.1	chr11	110337558	110337758	-	1	NA	NA	NA	58	NM_147219	217265	Mm.41942	NM_147219	ENSMUSG00000018800	Abca5	ABC13|B930033A02Rik|mKIAA1888	ATP-binding cassette, sub-family A (ABC1), member 5	protein-coding	0.185000	0.756219	
mm_13243.1	chr2	98662667	98662867	+	1	NA	NA	NA	1195110	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.030000	0.348259	
mm_62464.1	chr7	101663516	101663716	+	1	NA	NA	NA	-152	NM_009191	20480	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	0.040000	0.547264	
mm_102993.1	chr11	69686734	69686934	-	1	NA	NA	NA	-1280	NM_023517	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.015000	0.601990	
mm_57961.1	chr6	135253207	135253407	-	1	NA	NA	NA	1029	NM_010352	14840	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	0.020000	0.507463	
mm_94279.1	chr11	3963877	3964077	+	1	NA	NA	NA	2	NM_022889	64934	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	0.040000	0.557214	
mm_109589.1	chr12	112619976	112620176	+	1	NA	NA	NA	29	NM_007421	11565	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.105000	0.716418	
mm_100397.1	chr11	119392162	119392362	+	1	NA	NA	NA	1790	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.020000	0.606965	
mm_172846.1	chr9	3532622	3532822	+	1	NA	NA	NA	373	NM_001033322	234889	Mm.91240	NM_001033322	ENSMUSG00000041624	Gucy1a2	6330407I18Rik|A230060L24Rik	guanylate cyclase 1, soluble, alpha 2	protein-coding	0.035000	0.626866	
mm_17155.1	chr2	25224149	25224349	-	1	NA	NA	NA	453	NM_146116	227613	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	0.080000	0.671642	
mm_34229.1	chr4	141077864	141078064	+	1	NA	NA	NA	381	NM_025383	66147	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898	NECAP endocytosis associated 2	protein-coding	0.115000	0.711443	
mm_12157.1	chr2	62046518	62046718	+	1	NA	NA	NA	103	NM_033552	94229	Mm.314497	NM_033552	ENSMUSG00000026904	Slc4a10	NCBE|mKIAA4136	solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	protein-coding	0.025000	0.517413	
mm_23422.1	chr3	58595617	58595817	+	1	NA	NA	NA	19059	NM_001040396	69227	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	0.005000	0.422886	
mm_166571.1	chr6	48990072	48990272	+	1	NA	NA	NA	3311	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.025000	0.587065	
mm_140071.1	chr17	75005661	75005861	+	1	NA	NA	NA	232	NM_019919	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.100000	0.746269	
mm_100627.1	chr11	121702481	121702681	+	1	NA	NA	NA	154	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.125000	0.721393	
mm_56948.1	chr6	119969427	119969627	-	1	NA	NA	NA	64784	NR_030487	735290		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	0.015000	0.398010	
mm_48600.1	chr5	144221303	144221503	-	1	NA	NA	NA	2175	NM_027410	70381	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	0.010000	0.447761	-36(GAGTTTATAAAC,-,0.00),-34(GTTTATAAACAC,+,0.00)
mm_26981.1	chr3	25598971	25599171	-	1	NA	NA	NA	554236	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.283582	
mm_49837.1	chr6	37900411	37900611	+	1	NA	NA	NA	24	NM_001272076	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.005000	0.477612	
mm_115414.1	chr13	114932114	114932314	+	1	NA	NA	NA	-173	NM_008396	16398	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5	integrin alpha 2	protein-coding	0.060000	0.616915	
mm_38444.1	chr4	139967054	139967254	-	1	NA	NA	NA	466	NR_035519	100316727		NR_035519	ENSMUSG00000089294	Mir2139	mmu-mir-2139	microRNA 2139	ncRNA	0.010000	0.606965	
mm_124969.1	chr15	18818819	18819019	+	1	NA	NA	NA	-28	NM_001316758	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0.025000	0.477612	
mm_70863.1	chr8	24503042	24503242	+	1	NA	NA	NA	-18156	NR_035483	100316707		NR_035483	ENSMUSG00000088552	Mir1957a	Mir1957|mmu-mir-1957|mmu-mir-1957a	microRNA 1957a	ncRNA	0.025000	0.537313	
mm_104905.1	chr11	99643890	99644090	-	1	NA	NA	NA	99	NM_029613	76444	Mm.348022	NM_029613	ENSMUSG00000045109	Krtap4-7	2310037K05Rik|KAP4.7|KRTAP4.7	keratin associated protein 4-7	protein-coding	0.005000	0.611940	
mm_79007.1	chr9	45431234	45431434	+	1	NA	NA	NA	-102	NR_040732	74602	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.040000	0.611940	
mm_4404.1	chr1	172475278	172475478	+	1	NA	NA	NA	18	NM_029612	98365	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	0.005000	0.502488	
mm_68516.1	chr7	111735931	111736131	-	1	NA	NA	NA	43946	NM_173739	233733	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	0.000000	0.427861	22(TTCTTTAAAAGC,-,0.00),23(TCTTTAAAAGCT,+,0.00)
mm_131648.1	chr16	20535337	20535537	+	1	NA	NA	NA	-43	NM_001302970	11773	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.085000	0.631841	
mm_161728.1	chr17	29135151	29135351	+	1	NA	NA	NA	195	NM_001002786	442827	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	0.025000	0.592040	
mm_87077.1	chr10	29211690	29211890	+	1	NA	NA	NA	147	NM_001162537	212448	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	0.010000	0.462687	
mm_114137.1	chr13	55247829	55248029	+	1	NA	NA	NA	38147	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.030000	0.522388	
mm_78844.1	chr9	44327452	44327652	+	1	NA	NA	NA	707	NM_007875	13478	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	0.025000	0.547264	
mm_152804.1	chr19	21737558	21737758	-	1	NA	NA	NA	-40682	NM_001033759	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.045000	0.502488	
mm_121353.1	chr14	116925450	116925650	+	1	NA	NA	NA	253	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.110000	0.621891	61(GTGTTTAAAAAA,-,0.00)
mm_171703.1	chr4	72579104	72579304	-	1	NA	NA	NA	273430	NM_001199270	353204	Mm.317892	NM_001199270	ENSMUSG00000059343	Aldoart1	4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2	aldolase 1 A, retrogene 1	protein-coding	0.065000	0.641791	
mm_43867.1	chr5	143503322	143503522	+	1	NA	NA	NA	24571	NM_009007	19353	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	RAS-related C3 botulinum substrate 1	protein-coding	0.040000	0.542289	
mm_112869.1	chr13	20851295	20851495	+	1	NA	NA	NA	57282	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.407960	
mm_28568.1	chr3	93444928	93445128	-	1	NA	NA	NA	2698	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.050000	0.611940	
mm_45598.1	chr5	74983480	74983680	-	1	NA	NA	NA	34386	NR_045866	619945	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.005000	0.472637	
mm_75633.1	chr8	64718884	64719084	-	1	NA	NA	NA	14594	NM_025436	66234	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	0.030000	0.492537	
mm_24310.1	chr3	89418523	89418723	+	1	NA	NA	NA	72	NM_011368	20416	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	0.055000	0.587065	
mm_36907.1	chr4	108027225	108027425	-	1	NA	NA	NA	3661	NM_001285956	242608	Mm.74710	NM_172874	ENSMUSG00000028600	Podn	9430070G18|Pcan|SLRR5A	podocan	protein-coding	0.010000	0.577114	
mm_170793.1	chr2	175275008	175275208	+	1	NA	NA	NA	-16	NM_001033123	13999		NM_001033123	ENSMUSG00000078889	Gm14288	OTTMUSG00000016199	predicted gene 14288	protein-coding	0.010000	0.492537	
mm_103001.1	chr11	69693445	69693645	-	1	NA	NA	NA	2553	NM_011614	21944	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0.020000	0.597015	
mm_52563.1	chr6	116226161	116226361	+	1	NA	NA	NA	18228	NM_026585	28006	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	0.015000	0.368159	
mm_53557.1	chr6	136938906	136939106	+	1	NA	NA	NA	521	NM_001301303	11857	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	0.025000	0.567164	
mm_163815.1	chr14	19416311	19416511	+	1	NA	NA	NA	186176	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.015000	0.353234	
mm_8417.1	chr1	152090220	152090420	-	1	NA	NA	NA	0	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik|ENSMUSG00000073540	RIKEN cDNA 1700025G04 gene	protein-coding	0.130000	0.810945	
mm_30699.1	chr4	11704347	11704547	+	1	NA	NA	NA	0	NM_010276	14579	Mm.247486	NM_010276	ENSMUSG00000028214	Gem	AV020497	GTP binding protein (gene overexpressed in skeletal muscle)	protein-coding	0.140000	0.726368	
mm_25723.1	chr3	122729824	122730024	+	1	NA	NA	NA	766	NM_153422	242202	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	0.090000	0.696517	
mm_8399.1	chr1	151500672	151500872	-	1	NA	NA	NA	51	NM_011277	19821	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0.105000	0.671642	
mm_158380.1	chrX	135693689	135693889	-	1	NA	NA	NA	1	NM_027952	71841	Mm.371643	NM_027952	ENSMUSG00000058252	Tcp11x2	1700008I05Rik|C77164|TCP11|Tcp11l3	t-complex 11 family, X-linked 2	protein-coding	0.005000	0.502488	
mm_61494.1	chr7	75752272	75752472	+	1	NA	NA	NA	-95966	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.005000	0.402985	
mm_62798.1	chr7	112809704	112809904	+	1	NA	NA	NA	50420	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.005000	0.422886	
mm_90288.1	chr10	123360686	123360886	+	1	NA	NA	NA	96710	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	0.040000	0.507463	
mm_72072.1	chr8	71542842	71543042	+	1	NA	NA	NA	12	NM_028617	73711	Mm.307770	NM_028617	ENSMUSG00000031813	Mvb12a	1110012M11Rik|Fam125a	multivesicular body subunit 12A	protein-coding	0.090000	0.636816	
mm_55532.1	chr6	70726757	70726957	-	1	NA	NA	NA	65318	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.507463	
mm_91766.1	chr10	51496494	51496694	-	1	NA	NA	NA	5696	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.288557	
mm_87909.1	chr10	62253016	62253216	+	1	NA	NA	NA	678	NM_009314	21337	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0.030000	0.527363	
mm_52637.1	chr6	117174528	117174728	+	1	NA	NA	NA	6093	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.015000	0.383085	
mm_35726.1	chr4	44710604	44710804	-	1	NA	NA	NA	-264	NM_008782	18507	Mm.439659	NM_008782	ENSMUSG00000014030	Pax5	BSAP|EBB-1|KLP|Pax-5	paired box 5	protein-coding	0.050000	0.477612	
mm_40474.1	chr5	53998572	53998772	+	1	NA	NA	NA	149	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.150000	0.651741	
mm_1477.1	chr1	71327209	71327409	+	1	NA	NA	NA	87601	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding	0.045000	0.606965	
mm_123793.1	chr14	70443129	70443329	-	1	NA	NA	NA	-2	NM_001164082	67065	Mm.20420	NM_025945	ENSMUSG00000000776	Polr3d	2810426M17Rik|44kDa|AI326118|AW489084|BN51T|RPC4|TSBN51	polymerase (RNA) III (DNA directed) polypeptide D	protein-coding	0.095000	0.691542	
mm_101301.1	chr11	22286900	22287100	-	1	NA	NA	NA	-205	NM_001252515	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0.115000	0.746269	
mm_35470.1	chr4	40805973	40806173	-	1	NA	NA	NA	44065	NR_039584	100628614		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.015000	0.562189	
mm_57168.1	chr6	122802101	122802301	-	1	NA	NA	NA	-17983	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.035000	0.537313	
mm_41790.1	chr5	103752923	103753123	+	1	NA	NA	NA	-1139	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.025000	0.472637	
mm_158788.1	chrX	167208490	167208690	-	1	NA	NA	NA	628	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.050000	0.577114	
mm_160703.1	chr10	51490874	51491074	+	1	NA	NA	NA	76	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.010000	0.477612	
mm_92168.1	chr10	67569928	67570128	-	1	NA	NA	NA	-21073	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.015000	0.482587	
mm_79800.1	chr9	64121403	64121603	+	1	NA	NA	NA	4356	NM_145835	235435	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	0.020000	0.417910	
mm_72548.1	chr8	84003012	84003212	+	1	NA	NA	NA	1406	NM_183097	73453	Mm.75101	NM_183097	ENSMUSG00000046408	1700067K01Rik	-	RIKEN cDNA 1700067K01 gene	protein-coding	0.010000	0.532338	
mm_10217.1	chr2	5895401	5895601	+	1	NA	NA	NA	-148	NM_021305	57743	Mm.21435	NM_021305	ENSMUSG00000025816	Sec61a2	-	Sec61, alpha subunit 2 (S. cerevisiae)	protein-coding	0.080000	0.616915	
mm_67114.1	chr7	70361360	70361560	-	1	NA	NA	NA	-867	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.075000	0.621891	
mm_172091.1	chr6	21014126	21014326	+	1	NA	NA	NA	-201883	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.020000	0.462687	-89(GACTTTAAGAAG,-,0.00)
mm_48800.1	chr5	148928913	148929113	-	1	NA	NA	NA	-366	NM_153572	231912	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	0.115000	0.701493	
mm_147287.1	chr18	39489431	39489631	-	1	NA	NA	NA	-2286	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.135000	0.731343	
mm_11117.1	chr2	28205077	28205277	+	1	NA	NA	NA	-512	NM_001038612	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.010000	0.547264	
mm_11254.1	chr2	29903450	29903650	+	1	NA	NA	NA	13487	NM_013615	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.015000	0.572139	
mm_83400.1	chr9	44735086	44735286	-	1	NA	NA	NA	12	NM_153537	102693	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.055000	0.671642	
mm_164769.1	chr17	86667866	86668066	+	1	NA	NA	NA	-85898	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.010000	0.452736	
mm_46510.1	chr5	105136739	105136939	-	1	NA	NA	NA	2713	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.015000	0.452736	
mm_49917.1	chr6	39118205	39118405	+	1	NA	NA	NA	44	NM_172893	243771	Mm.268462	NM_172893	ENSMUSG00000038507	Parp12	9930021O16|AA409132|AA536654|ARTD12|PARP-12|Zc3hdc1	poly (ADP-ribose) polymerase family, member 12	protein-coding	0.145000	0.746269	
mm_169090.1	chr13	38656124	38656324	-	1	NA	NA	NA	2804	NM_025380	66143	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	0.015000	0.437811	
mm_141301.1	chr17	28080479	28080679	-	1	NA	NA	NA	5	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.050000	0.686567	
mm_34379.1	chr4	144898605	144898805	+	1	NA	NA	NA	5568	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.005000	0.432836	
mm_158795.1	chrX	167241146	167241346	-	1	NA	NA	NA	23083	NM_001313761	170744	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	0.010000	0.278607	-71(TTTTAAAAAGCC,+,0.00),-46(TCATTTTAAAGG,-,0.00)
mm_134620.1	chr16	21333231	21333431	-	1	NA	NA	NA	25	NR_131983	76222	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0.120000	0.711443	
mm_53255.1	chr6	127796387	127796587	+	1	NA	NA	NA	-8344	NR_106092	102466996		NR_106092	ENSMUSG00000104804	Mir7233	mmu-mir-7233	microRNA 7233	ncRNA	0.010000	0.477612	
mm_71503.1	chr8	46807138	46807338	+	1	NA	NA	NA	67493	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.010000	0.452736	
mm_61189.1	chr7	63452866	63453066	+	1	NA	NA	NA	8194	NM_130880	170711	Mm.156872	NM_130880	ENSMUSG00000033510	Otud7a	AJ430384|Otud7	OTU domain containing 7A	protein-coding	0.015000	0.363184	
mm_152246.1	chr19	8714231	8714431	-	1	NA	NA	NA	-434	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.025000	0.442786	
mm_161993.1	chr19	34938155	34938355	+	1	NA	NA	NA	15897	NM_183046	240641	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|B130024C23|C330014J10Rik|Mphosph1|magoo	kinesin family member 20B	protein-coding	0.015000	0.328358	
mm_22466.1	chr3	3656974	3657174	+	1	NA	NA	NA	149044	NM_013920	30942	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.005000	0.427861	
mm_55524.1	chr6	70457953	70458153	-	1	NA	NA	NA	334122	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.010000	0.407960	82(GACTTTTAAAAG,-,0.00),84(CTTTTAAAAGTA,+,0.00)
mm_100166.1	chr11	116531000	116531200	+	1	NA	NA	NA	-811	NM_001172475	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.025000	0.577114	
mm_165567.1	chr3	17948364	17948564	+	1	NA	NA	NA	20	NM_029289	75439	Mm.27023	NM_029289	ENSMUSG00000027564	Cypt12	1700001F04Rik|AV209098	cysteine-rich perinuclear theca 12	protein-coding	0.030000	0.567164	
mm_105402.1	chr11	103412982	103413182	-	1	NA	NA	NA	-418	NM_183034	353047	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.035000	0.512438	
mm_56067.1	chr6	86785453	86785653	-	1	NA	NA	NA	8031	NM_013471	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.000000	0.457711	
mm_74658.1	chr8	13548879	13549079	-	1	NA	NA	NA	13482	NM_025601	66501	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.020000	0.626866	
mm_147625.1	chr18	58096960	58097160	-	1	NA	NA	NA	112866	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.000000	0.378109	
mm_4268.1	chr1	171558821	171559021	+	1	NA	NA	NA	-272	NM_018729	18106	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0.010000	0.482587	
mm_51802.1	chr6	88724370	88724570	+	1	NA	NA	NA	58	NM_011844	23945	Mm.272197	NM_011844	ENSMUSG00000033174	Mgll	AA589436|Magl|Mgl	monoglyceride lipase	protein-coding	0.175000	0.796020	
mm_117872.1	chr13	98890950	98891150	-	1	NA	NA	NA	-8	NM_001048267	238799	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.085000	0.646766	
mm_154371.1	chrM	9881	10081	+	1	NA	NA	NA	NA	NA									0.010000	0.402985	
mm_148799.1	chr19	6241588	6241788	+	1	NA	NA	NA	20	NM_194348	329015	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0.135000	0.741294	
mm_141350.1	chr17	28621994	28622194	-	1	NA	NA	NA	360	NM_016795	20815	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	0.110000	0.721393	
mm_27775.1	chr3	73047853	73048053	-	1	NA	NA	NA	8990	NM_198864	386750	Mm.331076	NM_198864	ENSMUSG00000048304	Slitrk3	-	SLIT and NTRK-like family, member 3	protein-coding	0.010000	0.487562	
mm_120925.1	chr14	76476797	76476997	+	1	NA	NA	NA	-11539	NM_001177751	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.015000	0.507463	
mm_69454.1	chr7	133122650	133122850	-	1	NA	NA	NA	733	NM_009980	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.120000	0.646766	
mm_60354.1	chr7	44384556	44384756	+	1	NA	NA	NA	530	NM_016663	20981	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	0.050000	0.611940	
mm_25231.1	chr3	103860284	103860484	+	1	NA	NA	NA	107	NM_008979	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.010000	0.507463	59(GCCCAGAAAAAG,-,0.00)
mm_81604.1	chr9	110656372	110656572	+	1	NA	NA	NA	-31	NM_028312	72654	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.045000	0.567164	
mm_59364.1	chr7	25687477	25687677	+	1	NA	NA	NA	575	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.040000	0.601990	32(CCCTATTTAAGA,-,0.00)
mm_51647.1	chr6	86028661	86028861	+	1	NA	NA	NA	80	NM_001271860	11519	Mm.104155	NM_013458	ENSMUSG00000030000	Add2	2900072M03Rik|add97	adducin 2 (beta)	protein-coding	0.095000	0.681592	
mm_10521.1	chr2	16362338	16362538	+	1	NA	NA	NA	6134	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.005000	0.303483	
mm_162267.1	chr1	7130709	7130909	+	1	NA	NA	NA	41889	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.000000	0.313433	-43(ATGTATTAAAGC,-,0.00)
mm_99331.1	chr11	101460130	101460330	+	1	NA	NA	NA	5969	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.020000	0.582090	
mm_83833.1	chr9	54209842	54210042	-	1	NA	NA	NA	-16500	NM_007810	13075	Mm.5199	NM_007810	ENSMUSG00000032274	Cyp19a1	Ar|ArKO|Cyp19|Int-5|Int5|p450arom	cytochrome P450, family 19, subfamily a, polypeptide 1	protein-coding	0.000000	0.402985	
mm_9364.1	chr1	172199055	172199255	-	1	NA	NA	NA	7649	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.020000	0.492537	
mm_50968.1	chr6	60485882	60486082	+	1	NA	NA	NA	-82275	NR_015565	208079	Mm.131226	NM_177329	ENSMUSG00000046764	A530053G22Rik	-	RIKEN cDNA A530053G22 gene	ncRNA	0.020000	0.348259	
mm_104977.1	chr11	100246119	100246319	-	1	NA	NA	NA	2683	NM_001313958	16666	Mm.422799	NM_008470	ENSMUSG00000053797	Krt16	AI324768|CK-16|K16|Krt1-16	keratin 16	protein-coding	0.015000	0.572139	
mm_154586.1	chrX	7572703	7572903	+	1	NA	NA	NA	-797	NR_029473	78185	Mm.160055	NR_029473	ENSMUSG00000039545	Ppp1r3fos	4930524L23Rik	protein phosphatase 1, regulatory subunit 3F, opposite strand	ncRNA	0.030000	0.517413	
mm_135701.1	chr16	52452923	52453123	-	1	NA	NA	NA	58	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.090000	0.721393	
mm_50850.1	chr6	54878310	54878510	+	1	NA	NA	NA	61494	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.015000	0.437811	
mm_58864.1	chr7	16910384	16910584	+	1	NA	NA	NA	3994	NM_008967	19222	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0.005000	0.393035	
mm_97318.1	chr11	76902077	76902277	+	1	NA	NA	NA	-2368	NM_025655	66601	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.010000	0.442786	
mm_7077.1	chr1	88274036	88274236	-	1	NA	NA	NA	3421	NM_172505	212427	Mm.384762	NM_172505		A730008H23Rik	mFleg1	RIKEN cDNA A730008H23 gene	protein-coding	0.010000	0.452736	
mm_75014.1	chr8	29150465	29150665	-	1	NA	NA	NA	69071	NM_001347499	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 netrin receptor D	protein-coding	0.005000	0.338308	-17(CTTTTTATGGGA,+,0.00)
mm_124618.1	chr15	3279630	3279830	+	1	NA	NA	NA	8753	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.000000	0.373134	
mm_142883.1	chr17	51829430	51829630	-	1	NA	NA	NA	-2942	NM_001163631	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.000000	0.373134	-65(AGGCCTAAAAGG,-,0.00)
mm_137625.1	chr17	28328074	28328274	+	1	NA	NA	NA	-297	NM_011287	19896	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.035000	0.587065	
mm_68661.1	chr7	118781213	118781413	-	1	NA	NA	NA	41042	NM_027815	71517	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	0.000000	0.497512	
mm_135451.1	chr16	45724299	45724499	-	1	NA	NA	NA	132	NM_019754	56370	Mm.24183	NM_019754	ENSMUSG00000022658	Tagln3	2700038H05Rik|2900005O10Rik|AI426007|Np25	transgelin 3	protein-coding	0.045000	0.572139	
mm_119913.1	chr14	54952995	54953195	+	1	NA	NA	NA	-3953	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.010000	0.442786	
mm_81721.1	chr9	112227335	112227535	+	1	NA	NA	NA	-21	NR_131053	70194	Mm.452769	NR_131053		2310075C17Rik	-	RIKEN cDNA 2310075C17 gene	ncRNA	0.050000	0.492537	
mm_102977.1	chr11	69672288	69672488	-	1	NA	NA	NA	35	NM_144958	13681	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0.085000	0.582090	36(CGCTCTATAAGT,-,0.00)
mm_16708.1	chr2	7083767	7083967	-	1	NA	NA	NA	-2565	NM_001160292	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.005000	0.447761	
mm_89514.1	chr10	94198935	94199135	+	1	NA	NA	NA	26	NM_025551	66414	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12	protein-coding	0.105000	0.656716	
mm_40234.1	chr5	37338403	37338603	+	1	NA	NA	NA	25	NM_145920	68525	Mm.25506	NM_145920	ENSMUSG00000050248	Evc2	1110017L09Rik|Lbn|limbin	Ellis van Creveld syndrome 2	protein-coding	0.095000	0.701493	
mm_165535.1	chr2	180381047	180381247	-	1	NA	NA	NA	-4457	NR_045331	622283	Mm.447602	NR_045331		Mir1a-1hg	EG622283|Gm6307	Mir1a-1 and Mir133a-2 host gene	ncRNA	0.005000	0.537313	
mm_153954.1	chr19	47691811	47692011	-	1	NA	NA	NA	131	NM_007732	12821	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	0.030000	0.482587	
mm_111723.1	chr12	103763718	103763918	-	1	NA	NA	NA	9815	NM_009246	20703	Mm.439695	NM_009246	ENSMUSG00000071177	Serpina1d	AI118301|Dom4|PI4|Spi1-4	serine (or cysteine) peptidase inhibitor, clade A, member 1D	protein-coding	0.025000	0.492537	
mm_75103.1	chr8	34146484	34146684	-	1	NA	NA	NA	155	NM_026609	68192	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	0.120000	0.746269	
mm_39229.1	chr4	156228455	156228655	-	1	NA	NA	NA	-13	NM_001008233	231002	Mm.423124	NM_001008233	ENSMUSG00000078485	Plekhn1	BC025458	pleckstrin homology domain containing, family N member 1	protein-coding	0.030000	0.646766	
mm_138606.1	chr17	35649662	35649862	+	1	NA	NA	NA	54	NM_001163194	433102	Mm.136760	NM_001163194	ENSMUSG00000090509	Sfta2	EG433102	surfactant associated 2	protein-coding	0.005000	0.542289	
mm_98736.1	chr11	96353060	96353260	+	1	NA	NA	NA	1528	NM_134032	103889	Mm.281153	NM_134032	ENSMUSG00000075588	Hoxb2	AI894218|Hox-2.8|Hoxbes2	homeobox B2	protein-coding	0.125000	0.681592	
mm_167072.1	chr7	99625415	99625615	+	1	NA	NA	NA	1588	NM_001195529	100503386	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	0.055000	0.641791	
mm_46684.1	chr5	109690738	109690938	-	1	NA	NA	NA	-131845	NM_001310694	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.040000	0.537313	
mm_118564.1	chr14	18034245	18034445	+	1	NA	NA	NA	52701	NM_009380	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.005000	0.368159	
mm_45651.1	chr5	77094929	77095129	-	1	NA	NA	NA	238	NM_001159901	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.100000	0.696517	
mm_126341.1	chr15	79900226	79900426	+	1	NA	NA	NA	5303	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.010000	0.587065	
mm_157526.1	chrX	51017816	51018016	-	1	NA	NA	NA	102	NM_172413	72065	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	0.045000	0.577114	
mm_81023.1	chr9	104361796	104361996	+	1	NA	NA	NA	-24174	NM_207668	56318	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	0.020000	0.497512	56(CTTTTTCAAGGG,+,0.00)
mm_141770.1	chr17	34283211	34283411	-	1	NA	NA	NA	4460	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.010000	0.517413	
mm_58794.1	chr7	16160103	16160303	+	1	NA	NA	NA	-15192	NM_001277988	17537	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0.010000	0.567164	
mm_150497.1	chr19	39018384	39018584	+	1	NA	NA	NA	11465	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.000000	0.348259	
mm_95827.1	chr11	55417128	55417328	+	1	NA	NA	NA	2852	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.000000	0.412935	
mm_145128.1	chr18	44556705	44556905	+	1	NA	NA	NA	-104860	NR_026853	626275	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	0.040000	0.497512	
mm_147687.1	chr18	60727447	60727647	-	1	NA	NA	NA	-14158	NM_008306	15531	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.025000	0.562189	
mm_96253.1	chr11	62583810	62584010	+	1	NA	NA	NA	9424	NM_011706	22368	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0.000000	0.378109	-82(GCCTCTAAAGAC,-,0.00)
mm_135375.1	chr16	44138885	44139085	-	1	NA	NA	NA	34	NM_007508	11964	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.045000	0.597015	
mm_67232.1	chr7	74853721	74853921	-	1	NA	NA	NA	-176390	NR_131122	75205	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA	0.015000	0.407960	
mm_169912.1	chr16	55819600	55819800	-	1	NA	NA	NA	2438	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.030000	0.537313	
mm_152496.1	chr19	11081000	11081200	-	1	NA	NA	NA	3	NM_022430	64381	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	0.015000	0.492537	
mm_25911.1	chr3	131113787	131113987	+	1	NA	NA	NA	1096	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.015000	0.512438	
mm_40666.1	chr5	65391444	65391644	+	1	NA	NA	NA	47	NM_001310612	79464	Mm.195776	NM_024471	ENSMUSG00000029199	Lias	2900022L22Rik|4933425M12Rik|7a5ex|C77512|LS|lip-syn	lipoic acid synthetase	protein-coding	0.140000	0.621891	-74(GCTTTAAGGCGG,+,0.00)
mm_172409.1	chr7	18108323	18108523	+	1	NA	NA	NA	42494	NM_001162523	67315	Mm.46089	NM_026087	ENSMUSG00000030366	Ceacam12	1600031J20Rik|Ceacam12-C1|Ceacam12-C3|Ceacam12C1|Ceacam12C3	carcinoembryonic antigen-related cell adhesion molecule 12	protein-coding	0.010000	0.527363	
mm_145596.1	chr18	60987666	60987866	+	1	NA	NA	NA	24212	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.015000	0.507463	
mm_106269.1	chr11	117969822	117970022	-	1	NA	NA	NA	-556	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.040000	0.592040	
mm_124673.1	chr15	6417380	6417580	+	1	NA	NA	NA	-27853	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.010000	0.333333	
mm_11674.1	chr2	35330972	35331172	+	1	NA	NA	NA	5937	NM_013515	13830	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.005000	0.393035	
mm_109375.1	chr12	109650887	109651087	+	1	NA	NA	NA	278	NR_028434	100303647		NR_028434		AF357359	MBII-426	snoRNA AF357359	snoRNA	0.025000	0.432836	
mm_135372.1	chr16	44086002	44086202	-	1	NA	NA	NA	52917	NM_007508	11964	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.010000	0.452736	
mm_70462.1	chr8	11854233	11854433	+	1	NA	NA	NA	13812	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	0.010000	0.522388	
mm_160546.1	chr9	44483104	44483304	+	1	NA	NA	NA	-15932	NM_030256	80288	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.080000	0.701493	
mm_105881.1	chr11	114930229	114930429	-	1	NA	NA	NA	4057	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.000000	0.457711	
mm_52668.1	chr6	117906872	117907072	+	1	NA	NA	NA	190	NM_133834	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.130000	0.761194	
mm_97070.1	chr11	72991873	72992073	+	1	NA	NA	NA	-7172	NM_008771	18436	Mm.25722	NM_008771	ENSMUSG00000020787	P2rx1	AI323649|BB122383|P2x|Pdcd3|RP-2	purinergic receptor P2X, ligand-gated ion channel, 1	protein-coding	0.025000	0.597015	
mm_89341.1	chr10	87935819	87936019	+	1	NA	NA	NA	-30752	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.412935	73(TCTTTTAGAGGC,+,0.00)
mm_6030.1	chr1	59537113	59537313	-	1	NA	NA	NA	20949	NM_001013771	381260	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0.005000	0.482587	
mm_94105.1	chr10	128578387	128578587	-	1	NA	NA	NA	6010	NR_105882	102465553		NR_105882	ENSMUSG00000098592	Mir6917	Gm27633|mmu-mir-6917	microRNA 6917	ncRNA	0.035000	0.522388	
mm_129530.1	chr15	79285358	79285558	-	1	NA	NA	NA	51	NM_177580	207495	Mm.309647	NM_177580	ENSMUSG00000018126	Baiap2l2	BC048937	BAI1-associated protein 2-like 2	protein-coding	0.015000	0.621891	
mm_96670.1	chr11	69410740	69410940	+	1	NA	NA	NA	2835	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.050000	0.636816	
mm_72255.1	chr8	75096758	75096958	+	1	NA	NA	NA	3240	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.010000	0.542289	
mm_31322.1	chr4	46343546	46343746	+	1	NA	NA	NA	-548	NM_183298	110805	Mm.354634	NM_183298	ENSMUSG00000070990	Foxe1	Titf2	forkhead box E1	protein-coding	0.085000	0.726368	-34(GCGCCTTTAAGG,-,0.00),-32(GCCTTTAAGGAG,+,0.00)
mm_6102.1	chr1	64030091	64030291	-	1	NA	NA	NA	12310	NR_105864	102466760		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.000000	0.442786	
mm_39807.1	chr5	30627936	30628136	+	1	NA	NA	NA	-19900	NR_049199	100885838		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.010000	0.467662	
mm_81005.1	chr9	103427394	103427594	+	1	NA	NA	NA	3916	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.005000	0.467662	
mm_86186.1	chr9	119339755	119339955	-	1	NA	NA	NA	185	NM_010851	17874	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	0.100000	0.646766	
mm_43546.1	chr5	137553505	137553705	+	1	NA	NA	NA	50	NM_031404	83766	Mm.31646	NM_031404	ENSMUSG00000029712	Actl6b	Actl6|ArpNa|Baf53b	actin-like 6B	protein-coding	0.115000	0.746269	
mm_4996.1	chr1	191821430	191821630	+	1	NA	NA	NA	57	NM_010892	18005	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0.105000	0.656716	
mm_112281.1	chr12	114392120	114392320	-	1	NA	NA	NA	77246	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.005000	0.412935	85(TTCTTTTAAAAG,-,0.00),86(TCTTTTAAAAGG,+,0.00),86(TCTTTTAAAAGG,-,0.00),87(CTTTTAAAAGGT,+,0.00)
mm_133965.1	chr16	4211360	4211560	-	1	NA	NA	NA	1944	NM_001025432	12914	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0.005000	0.427861	
mm_121176.1	chr14	103037317	103037517	+	1	NA	NA	NA	-3614	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.005000	0.422886	
mm_87692.1	chr10	59540754	59540954	+	1	NA	NA	NA	75838	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.005000	0.427861	
mm_131702.1	chr16	20717736	20717936	+	1	NA	NA	NA	10	NM_145632	245841	Mm.288730	NM_145632	ENSMUSG00000021018	Polr2h	-	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding	0.105000	0.666667	
mm_65921.1	chr7	30231656	30231856	-	1	NA	NA	NA	273	NM_025548	66411	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	0.085000	0.636816	
mm_35689.1	chr4	44072536	44072736	-	1	NA	NA	NA	37	NM_001190414	50798	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	0.125000	0.726368	
mm_36833.1	chr4	106463999	106464199	-	1	NA	NA	NA	226	NM_153565	100102	Mm.133268	NM_153565	ENSMUSG00000044254	Pcsk9	AI415265|AI747682|FH3|HCHOLA3|Narc1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding	0.060000	0.626866	
mm_168429.1	chr11	33754752	33754952	-	1	NA	NA	NA	88733	NM_027398	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.070000	0.547264	1(AACTTTAAATGG,-,0.00)
mm_109833.1	chr12	4038831	4039031	-	1	NA	NA	NA	-16	NM_001082483	668212	Mm.210266	NM_001082483	ENSMUSG00000020658	Efr3b	AI852640|C030014M07Rik|mKIAA0953	EFR3 homolog B	protein-coding	0.115000	0.766169	
mm_105545.1	chr11	106324874	106325074	-	1	NA	NA	NA	-10412	NM_001313939	15985	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	0.000000	0.512438	
mm_15005.1	chr2	152476962	152477162	+	1	NA	NA	NA	-1	NM_176950	319579	Mm.190454	NM_176950	ENSMUSG00000049560	Defb20	9230107O10Rik|BD-20|mBD-20	defensin beta 20	protein-coding	0.005000	0.512438	
mm_41532.1	chr5	92809252	92809452	+	1	NA	NA	NA	-30	NM_001077595	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.025000	0.611940	
mm_85403.1	chr9	103365351	103365551	-	1	NA	NA	NA	329	NM_175833	321022	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.150000	0.786070	
mm_110565.1	chr12	55821043	55821243	-	1	NA	NA	NA	373	NM_019994	56784	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0.105000	0.636816	
mm_47717.1	chr5	130002571	130002771	-	1	NA	NA	NA	157	NM_010368	110006	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.105000	0.681592	
mm_54734.1	chr6	40940441	40940641	-	1	NA	NA	NA	16	NM_028550	73481	Mm.333010	NM_028550	ENSMUSG00000029883	1700074P13Rik	AV047902|Tryx5	RIKEN cDNA 1700074P13 gene	protein-coding	0.040000	0.482587	
mm_56932.1	chr6	119673705	119673905	-	1	NA	NA	NA	-129458	NM_009525	22419	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0.000000	0.398010	
mm_168963.1	chr12	80441319	80441519	-	1	NA	NA	NA	-4818	NM_177267	320808	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	0.040000	0.482587	
mm_78270.1	chr9	22002936	22003136	+	1	NA	NA	NA	48	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.065000	0.537313	
mm_46513.1	chr5	105239443	105239643	-	1	NA	NA	NA	-10	NM_001039646	626578	Mm.275893	NM_001039646	ENSMUSG00000105096	Gbp10	-	guanylate-binding protein 10	protein-coding	0.000000	0.487562	
mm_116667.1	chr13	49205370	49205570	-	1	NA	NA	NA	10556	NM_026738	68480	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.020000	0.587065	
mm_112425.1	chr13	4191135	4191335	+	1	NA	NA	NA	48	NM_013778	27384	Mm.27447	NM_013778	ENSMUSG00000021213	Akr1c13	mKIAA4014	aldo-keto reductase family 1, member C13	protein-coding	0.010000	0.462687	
mm_37539.1	chr4	125116593	125116793	-	1	NA	NA	NA	11188	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.020000	0.557214	
mm_109759.1	chr12	117843759	117843959	+	1	NA	NA	NA	-2	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.130000	0.741294	
mm_89261.1	chr10	87859387	87859587	+	1	NA	NA	NA	435	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.010000	0.358209	
mm_88340.1	chr10	75589330	75589530	+	1	NA	NA	NA	49	NM_011820	23887	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	0.015000	0.567164	
mm_145923.1	chr18	67088216	67088416	+	1	NA	NA	NA	18	NM_177137	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.085000	0.691542	
mm_115840.1	chr13	21287166	21287366	-	1	NA	NA	NA	5420	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.000000	0.452736	-69(CCCCCTTAAAGA,-,0.00),-68(CCCCTTAAAGAC,+,0.00),-66(CCTTAAAGACTG,+,0.00)
mm_111925.1	chr12	108882692	108882892	-	1	NA	NA	NA	10406	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.025000	0.502488	
mm_122048.1	chr14	30056282	30056482	-	1	NA	NA	NA	33749	NM_175343	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.020000	0.527363	
mm_27383.1	chr3	50607122	50607322	-	1	NA	NA	NA	-163609	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.512438	
mm_74076.1	chr8	122443958	122444158	+	1	NA	NA	NA	402	NR_045696	100689703	Mm.271989	NR_045696		9330133O14Rik	-	RIKEN cDNA 9330133O14 gene	ncRNA	0.055000	0.442786	
mm_95708.1	chr11	54455652	54455852	+	1	NA	NA	NA	17573	NM_173753	216742	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.005000	0.323383	
mm_161760.1	chr17	35847099	35847299	+	1	NA	NA	NA	5701	NM_001010833	240087	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	0.010000	0.497512	
mm_72995.1	chr8	93175470	93175670	+	1	NA	NA	NA	22234	NM_053200	104158	Mm.292803	NM_053200	ENSMUSG00000056973	Ces1d	Ces3|TGH	carboxylesterase 1D	protein-coding	0.000000	0.288557	
mm_163541.1	chr13	15103680	15103880	+	1	NA	NA	NA	-359943	NM_008130	14634	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0.010000	0.398010	-6(TCCTATTTAGGG,-,0.00),89(CTCTATTTAAGG,-,0.00)
mm_155406.1	chrX	73342556	73342756	+	1	NA	NA	NA	35	NM_001160229	27081	Mm.26595	NM_031494	ENSMUSG00000031365	Zfp275	5430431L06Rik|AI593314|DXBay20|DXHXS52|DXPas8	zinc finger protein 275	protein-coding	0.125000	0.746269	
mm_151636.1	chr19	3935708	3935908	-	1	NA	NA	NA	622	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.085000	0.611940	
mm_171828.1	chr5	144679111	144679311	+	1	NA	NA	NA	82367	NM_177735	243339	Mm.126793	NM_177735	ENSMUSG00000043388	Tmem130	BC067004|C130036G08	transmembrane protein 130	protein-coding	0.005000	0.472637	
mm_112137.1	chr12	113000540	113000740	-	1	NA	NA	NA	-19	NM_028193	72308	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	0.135000	0.716418	
mm_151372.1	chr19	55932277	55932477	+	1	NA	NA	NA	37056	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.015000	0.353234	
mm_155152.1	chrX	52912197	52912397	+	1	NA	NA	NA	83	NM_001290546	70998	Mm.26870	NM_027642	ENSMUSG00000025626	Phf6	2700007B13Rik|4931428F02Rik|mKIAA1823	PHD finger protein 6	protein-coding	0.125000	0.661692	
mm_59144.1	chr7	24280581	24280781	+	1	NA	NA	NA	10263	NM_009567	22755	Mm.383535	NM_009567	ENSMUSG00000055305	Zfp93	Znf235	zinc finger protein 93	protein-coding	0.020000	0.542289	
mm_88045.1	chr10	67538466	67538666	+	1	NA	NA	NA	636	NM_001347458	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.060000	0.626866	
mm_84465.1	chr9	66592909	66593109	-	1	NA	NA	NA	106	NM_144937	235441	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.105000	0.681592	
mm_17829.1	chr2	33913624	33913824	-	1	NA	NA	NA	-25778	NM_175184	72543	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.005000	0.522388	
mm_41825.1	chr5	104046811	104047011	+	1	NA	NA	NA	47	NM_028794	74167	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	0.145000	0.751244	
mm_40133.1	chr5	35042461	35042661	+	1	NA	NA	NA	1052	NM_019447	54426	Mm.27369	NM_019447	ENSMUSG00000029102	Hgfac	HGFA	hepatocyte growth factor activator	protein-coding	0.025000	0.601990	
mm_131044.1	chr16	3907698	3907898	+	1	NA	NA	NA	891	NM_028484	73261	Mm.486226	NM_028484	ENSMUSG00000005983	1700037C18Rik	2810022L20Rik	RIKEN cDNA 1700037C18 gene	protein-coding	0.005000	0.517413	
mm_114524.1	chr13	73467165	73467365	+	1	NA	NA	NA	-118	NM_145376	210992	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.100000	0.706468	
mm_58338.1	chr6	146954290	146954490	-	1	NA	NA	NA	31	NM_001164236	73344	Mm.391543	NM_028509	ENSMUSG00000040163	1700034J05Rik	-	RIKEN cDNA 1700034J05 gene	protein-coding	0.005000	0.477612	
mm_160357.1	chr8	21618038	21618238	+	1	NA	NA	NA	-30	NM_001079933	626708	Mm.305275	NM_001079933	ENSMUSG00000060070	Defa26	Defcr26	defensin, alpha, 26	protein-coding	0.000000	0.517413	
mm_107542.1	chr12	40648185	40648385	+	1	NA	NA	NA	202232	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.000000	0.333333	45(TCTTTTATATGC,+,0.00)
mm_79527.1	chr9	57652631	57652831	+	1	NA	NA	NA	900	NM_001304761	12988	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.010000	0.427861	-31(AGCCTTAAAAAC,-,0.00),-29(CCTTAAAAACAA,+,0.00)
mm_1327.1	chr1	65186567	65186767	+	1	NA	NA	NA	-18	NM_011086	18711	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE finger containing	protein-coding	0.095000	0.646766	
mm_170671.1	chr2	121230273	121230473	+	1	NA	NA	NA	41034	NM_001290830	27223	Mm.215389	NM_013735	ENSMUSG00000043909	Trp53bp1	53BP1|Tp53bp1|m53BP1|p53BP1	transformation related protein 53 binding protein 1	protein-coding	0.010000	0.437811	
mm_74520.1	chr8	9207186	9207386	-	1	NA	NA	NA	62617	NR_073360	74688	Mm.159298	NR_073360	ENSMUSG00000109215	4930453L07Rik	-	RIKEN cDNA 4930453L07 gene	ncRNA	0.025000	0.348259	
mm_75833.1	chr8	70522865	70523065	-	1	NA	NA	NA	215	NM_029366	75620	Mm.482129	NM_029366	ENSMUSG00000055553	Kxd1	0610030B01Rik|2810422J05Rik|C78305	KxDL motif containing 1	protein-coding	0.085000	0.681592	
mm_114959.1	chr13	97071316	97071516	+	1	NA	NA	NA	-227	NM_001100458	320557	Mm.458280	NM_001100458	ENSMUSG00000041817	Fam169a	B230112C05Rik|SLAP75	family with sequence similarity 169, member A	protein-coding	0.180000	0.776119	-32(TCTTTAATACGG,+,0.00)
mm_51698.1	chr6	86594795	86594995	+	1	NA	NA	NA	-33279	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.025000	0.547264	
mm_10252.1	chr2	9193392	9193592	+	1	NA	NA	NA	3977	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.015000	0.482587	
mm_15832.1	chr2	164655978	164656178	+	1	NA	NA	NA	32	NM_001039501	629756	Mm.189007	NM_001039501	ENSMUSG00000070529	Wfdc10	Gm120|OTTMUSG00000016289	WAP four-disulfide core domain 10	protein-coding	0.030000	0.582090	
mm_9657.1	chr1	177776500	177776700	-	1	NA	NA	NA	19909	NM_007422	11566	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.010000	0.378109	
mm_91526.1	chr10	37140717	37140917	-	1	NA	NA	NA	-1891	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.035000	0.522388	
mm_91528.1	chr10	37141182	37141382	-	1	NA	NA	NA	-2356	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.050000	0.616915	
mm_91691.1	chr10	43997252	43997452	-	1	NA	NA	NA	7494	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.010000	0.492537	
mm_60757.1	chr7	45514531	45514731	+	1	NA	NA	NA	29	NM_001290998	56734	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0.025000	0.562189	
mm_77479.1	chr8	122474679	122474879	-	1	NA	NA	NA	1285	NM_001033142	68718	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	0.020000	0.407960	
mm_32737.1	chr4	116596680	116596880	+	1	NA	NA	NA	50	NM_001037916	622665	Mm.388905	NM_001037916	ENSMUSG00000034035	Ccdc17	-	coiled-coil domain containing 17	protein-coding	0.020000	0.467662	-16(GTGTCTATAAGA,-,0.00),-14(GTCTATAAGAGA,-,0.00)
mm_83967.1	chr9	57158095	57158295	-	1	NA	NA	NA	104	NM_025417	66199	Mm.41687	NM_025417	ENSMUSG00000032299	Commd4	1110039H05Rik	COMM domain containing 4	protein-coding	0.075000	0.616915	
mm_85795.1	chr9	109849347	109849547	-	1	NA	NA	NA	9	NM_009921	12796	Mm.3834	NM_009921	ENSMUSG00000038357	Camp	CAP18|Cnlp|Cramp|FALL39|MCLP	cathelicidin antimicrobial peptide	protein-coding	0.010000	0.597015	
mm_133047.1	chr16	57569672	57569872	+	1	NA	NA	NA	20530	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.015000	0.482587	
mm_12314.1	chr2	69219897	69220097	+	1	NA	NA	NA	48	NM_001289857	14378	Mm.140768	NM_021331	ENSMUSG00000005232	G6pc2	G6pc-rs|IGRP	glucose-6-phosphatase, catalytic, 2	protein-coding	0.015000	0.492537	-31(CCATATAGAGAC,+,0.00)
mm_141811.1	chr17	34603589	34603789	-	1	NA	NA	NA	-128	NM_019403	54197	Mm.274542	NM_019403	ENSMUSG00000015478	Rnf5	2410131O05Rik|AA407576|NG2	ring finger protein 5	protein-coding	0.040000	0.502488	
mm_121537.1	chr14	122375705	122375905	+	1	NA	NA	NA	75310	NR_033325	328479	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.000000	0.477612	
mm_69494.1	chr7	134224996	134225196	-	1	NA	NA	NA	1	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.105000	0.621891	
mm_3443.1	chr1	150102652	150102852	+	1	NA	NA	NA	2721	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.467662	
mm_146535.1	chr18	5404400	5404600	-	1	NA	NA	NA	-70061	NM_178722	240186	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.005000	0.527363	
mm_38735.1	chr4	145245532	145245732	-	1	NA	NA	NA	1238	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.015000	0.577114	
mm_164518.1	chr16	96443623	96443823	+	1	NA	NA	NA	-109	NM_008405	16415	Mm.12872	NM_008405	ENSMUSG00000000157	Itgb2l	5033406G21Rik|pactolus	integrin beta 2-like	protein-coding	0.005000	0.547264	
mm_116589.1	chr13	48273787	48273987	-	1	NA	NA	NA	-3	NR_045162	320315	Mm.185120	NR_045162	ENSMUSG00000097326	A330048O09Rik	-	RIKEN cDNA A330048O09 gene	ncRNA	0.025000	0.517413	
mm_164634.1	chr17	34054971	34055171	+	1	NA	NA	NA	15933	NM_001317722	12815	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.010000	0.616915	-54(CCCTTTAGAGCT,+,0.00)
mm_74844.1	chr8	24571114	24571314	-	1	NA	NA	NA	5119	NM_145949	209176	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0.015000	0.492537	-35(GAGTTTTAAAGG,-,0.00)
mm_44028.1	chr5	147430289	147430489	+	1	NA	NA	NA	-191	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.135000	0.771144	-1(GCCCCTTTAAGG,-,0.00),1(CCCTTTAAGGAC,+,0.00)
mm_48845.1	chr5	149367067	149367267	-	1	NA	NA	NA	-44639	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.000000	0.472637	
mm_63265.1	chr7	126759532	126759732	+	1	NA	NA	NA	6	NM_011952	26417	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.145000	0.850746	
mm_164195.1	chr15	78959834	78960034	+	1	NA	NA	NA	12210	NM_001039155	110253	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.030000	0.592040	
mm_94198.1	chr11	3101323	3101523	+	1	NA	NA	NA	-22598	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.020000	0.353234	
mm_89396.1	chr10	90070913	90071113	+	1	NA	NA	NA	197504	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.020000	0.388060	
mm_103937.1	chr11	83657322	83657522	-	1	NA	NA	NA	-5162	NM_013652	20303	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.015000	0.452736	
mm_95137.1	chr11	34833689	34833889	+	1	NA	NA	NA	-148	NM_027411	70385	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0.075000	0.547264	
mm_121300.1	chr14	105589520	105589720	+	1	NA	NA	NA	71	NR_102319	380930	Mm.427836	NR_102319		9330188P03Rik	Gm1589|mgt-6	RIKEN cDNA 9330188P03 gene	ncRNA	0.045000	0.492537	
mm_79428.1	chr9	55938143	55938343	+	1	NA	NA	NA	-128	NM_001081341	244891	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	0.100000	0.621891	
mm_56926.1	chr6	119467097	119467297	-	1	NA	NA	NA	14	NM_001271758	22419	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0.005000	0.522388	
mm_95584.1	chr11	53266955	53267155	+	1	NA	NA	NA	33424	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.020000	0.477612	
mm_119419.1	chr14	45329706	45329906	+	1	NA	NA	NA	-18	NM_025959	67089	Mm.18472	NM_025959	ENSMUSG00000021832	Psmc6	2300001E01Rik|AI451058	proteasome (prosome, macropain) 26S subunit, ATPase, 6	protein-coding	0.085000	0.696517	
mm_37423.1	chr4	122885812	122886012	-	1	NA	NA	NA	145	NM_007598	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.100000	0.651741	
mm_146346.1	chr18	82537577	82537777	+	1	NA	NA	NA	-16786	NM_001025256	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.015000	0.497512	
mm_145993.1	chr18	68337446	68337646	+	1	NA	NA	NA	-57	NM_013596	17203	Mm.8003	NM_013596	ENSMUSG00000007480	Mc5r	-	melanocortin 5 receptor	protein-coding	0.070000	0.631841	-68(CTGTTTAAAAGC,-,0.00)
mm_67597.1	chr7	83732319	83732519	-	1	NA	NA	NA	3071	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.030000	0.582090	
mm_20957.1	chr2	151741173	151741373	-	1	NA	NA	NA	37	NM_212446	228769	Mm.146984	NM_144889	ENSMUSG00000032869	Psmf1	AW048666|BC012260|PI31	proteasome (prosome, macropain) inhibitor subunit 1	protein-coding	0.115000	0.606965	
mm_165806.1	chr3	144719919	144720119	-	1	NA	NA	NA	316	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.150000	0.776119	
mm_29265.1	chr3	107332947	107333147	-	1	NA	NA	NA	242	NM_001045807	229700	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.095000	0.582090	
mm_121749.1	chr14	18893683	18893883	-	1	NA	NA	NA	-156	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0.180000	0.761194	
mm_120428.1	chr14	65694731	65694931	+	1	NA	NA	NA	28428	NM_001168318	71145	Mm.83840	NM_028903	ENSMUSG00000022032	Scara5	4932433F15Rik|4933425F03Rik|AV278087|Tesr	scavenger receptor class A, member 5	protein-coding	0.010000	0.398010	
mm_5796.1	chr1	52140330	52140530	-	1	NA	NA	NA	20808	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.010000	0.417910	-35(GGCTATAAAAAC,-,0.00)
mm_46490.1	chr5	105132214	105132414	-	1	NA	NA	NA	7238	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.368159	
mm_111960.1	chr12	109596995	109597195	-	1	NA	NA	NA	-1692	NM_184109	353326	Mm.23062	NM_184109	ENSMUSG00000085925	Rtl1	6430411K18Rik|Mar|Mart1|Mor1|Peg11	retrotransposon-like 1	protein-coding	0.010000	0.348259	23(TTATATAAAAGG,-,0.00)
mm_98164.1	chr11	87745099	87745299	+	1	NA	NA	NA	7634	NM_009296	20922	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0.015000	0.547264	
mm_105350.1	chr11	103001793	103001993	-	1	NA	NA	NA	-1972	NR_105896	102466988		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.005000	0.407960	
mm_127405.1	chr15	101232318	101232518	+	1	NA	NA	NA	-7232	NR_045328	380977	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.010000	0.552239	
mm_47572.1	chr5	124479951	124480151	-	1	NA	NA	NA	-1816	NM_030259	80291	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.020000	0.512438	
mm_49259.1	chr6	17463728	17463928	+	1	NA	NA	NA	-129	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.095000	0.731343	
mm_68313.1	chr7	105787450	105787650	-	1	NA	NA	NA	0	NM_001162943	233651	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous 1 (Drosophila)	protein-coding	0.155000	0.766169	
mm_171558.1	chr4	147132141	147132341	+	1	NA	NA	NA	-43625	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.025000	0.552239	11(CCTTTTCTGCCG,+,0.00)
mm_170361.1	chr1	85270081	85270281	-	1	NA	NA	NA	385	NM_175219	620078	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik|OTTMUSG00000029174	RIKEN cDNA C130026I21 gene	protein-coding	0.005000	0.557214	
mm_146159.1	chr18	75018829	75019029	+	1	NA	NA	NA	157	NM_027727	69190	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	0.125000	0.756219	
mm_115114.1	chr13	104109667	104109867	+	1	NA	NA	NA	-23	NM_144838	218544	Mm.44416	NM_144838	ENSMUSG00000042743	Sgtb	C630001O05Rik	small glutamine-rich tetratricopeptide repeat (TPR)-containing, beta	protein-coding	0.100000	0.756219	
mm_6919.1	chr1	84840139	84840339	-	1	NA	NA	NA	398	NM_025386	66153	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.095000	0.656716	
mm_78705.1	chr9	41376323	41376523	+	1	NA	NA	NA	-103	NR_040725	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.045000	0.562189	
mm_91720.1	chr10	44458677	44458877	-	1	NA	NA	NA	-29	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.075000	0.656716	
mm_43215.1	chr5	129715414	129715614	+	1	NA	NA	NA	-14	NM_025450	66258	Mm.249809	NM_025450	ENSMUSG00000034211	Mrps17	1810006P02Rik|Mprs17	mitochondrial ribosomal protein S17	protein-coding	0.075000	0.646766	
mm_160316.1	chr7	142229876	142230076	-	1	NA	NA	NA	-5	NM_001037822	114666	Mm.444495	NM_001037822	ENSMUSG00000073785	Krtap5-5	A030001H12Rik|AI586182|BB149782	keratin associated protein 5-5	protein-coding	0.005000	0.542289	-34(GGATATAAAGGC,-,0.00)
mm_108850.1	chr12	98420048	98420248	+	1	NA	NA	NA	-103696	NR_136759	105245437	Mm.446375	NR_136759		Gm40893	-	predicted gene, 40893	ncRNA	0.010000	0.512438	
mm_144069.1	chr17	90995441	90995641	-	1	NA	NA	NA	94064	NM_001346957	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.000000	0.442786	
mm_115438.1	chr13	117602235	117602435	+	1	NA	NA	NA	15	NM_010408	15165	Mm.343429	NM_010408	ENSMUSG00000021730	Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding	0.115000	0.701493	
mm_52983.1	chr6	123263632	123263832	+	1	NA	NA	NA	1625	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.000000	0.412935	
mm_109434.1	chr12	110694170	110694370	+	1	NA	NA	NA	2125	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.005000	0.388060	
mm_115949.1	chr13	23745419	23745619	-	1	NA	NA	NA	2	NM_175653	319148	Mm.262517	NM_175653	ENSMUSG00000069310	Hist1h3c	H3-143	histone cluster 1, H3c	protein-coding	0.060000	0.517413	-35(GTATATTTAAGG,-,0.00)
mm_172223.1	chr6	66733969	66734169	-	1	NA	NA	NA	2677	NM_134165	171183	Mm.377164	NM_134165	ENSMUSG00000057612	Vmn1r37	V1rc10	vomeronasal 1 receptor 37	protein-coding	0.010000	0.422886	-16(CCATTTATACAA,+,0.00)
mm_121880.1	chr14	21052381	21052581	-	1	NA	NA	NA	-39	NM_018829	55946	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.075000	0.626866	
mm_37530.1	chr4	124851033	124851233	-	1	NA	NA	NA	374	NM_153566	230734	Mm.258568	NM_153566	ENSMUSG00000028889	Yrdc	AV303379|BC023823|IRIP|ITIP	yrdC domain containing (E.coli)	protein-coding	0.135000	0.751244	
mm_77668.1	chr8	124862889	124863089	-	1	NA	NA	NA	40	NM_025615	66523	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	0.115000	0.686567	
mm_114617.1	chr13	75849324	75849524	+	1	NA	NA	NA	9538	NM_053108	93692	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.010000	0.437811	
mm_154078.1	chr19	56548025	56548225	-	1	NA	NA	NA	97	NM_018831	55947	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0.050000	0.437811	
mm_97841.1	chr11	83065134	83065334	+	1	NA	NA	NA	122	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.010000	0.522388	
mm_666.1	chr1	40444814	40445014	+	1	NA	NA	NA	5285	NM_010743	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.015000	0.517413	
mm_29829.1	chr3	129754795	129754995	-	1	NA	NA	NA	427	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.040000	0.537313	-21(GTGTTTTTAAAG,-,0.00),-19(GTTTTTAAAGAT,+,0.00)
mm_102559.1	chr11	61453800	61454000	-	1	NA	NA	NA	92	NM_009548	22671	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	0.035000	0.582090	
mm_37228.1	chr4	117953479	117953679	-	1	NA	NA	NA	-23816	NM_001284192	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.030000	0.542289	
mm_125232.1	chr15	34142426	34142626	+	1	NA	NA	NA	59807	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.005000	0.457711	
mm_24738.1	chr3	95283228	95283428	+	1	NA	NA	NA	393	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.065000	0.601990	
mm_51194.1	chr6	71270802	71271002	+	1	NA	NA	NA	-769	NR_106192	102465900		NR_106192	ENSMUSG00000098623	Mir8112	Gm27739|mmu-mir-8112	microRNA 8112	ncRNA	0.005000	0.497512	
mm_20577.1	chr2	131086761	131086961	-	1	NA	NA	NA	-96	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.000000	0.507463	
mm_51744.1	chr6	87375692	87375892	+	1	NA	NA	NA	2427	NM_025467	66284	Mm.46446	NM_025467	ENSMUSG00000030049	Gkn2	1810036H07Rik|Bricd1b	gastrokine 2	protein-coding	0.025000	0.427861	
mm_149212.1	chr19	9984099	9984299	+	1	NA	NA	NA	1553	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.020000	0.482587	
mm_8987.1	chr1	165700835	165701035	-	1	NA	NA	NA	7159	NM_178593	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.000000	0.507463	
mm_99700.1	chr11	106159877	106160077	+	1	NA	NA	NA	165	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.175000	0.810945	
mm_18842.1	chr2	75137399	75137599	-	1	NA	NA	NA	306680	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA	0.075000	0.661692	
mm_19833.1	chr2	112267910	112268110	-	1	NA	NA	NA	1696	NM_133649	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.010000	0.333333	57(TTTTTAAAAGTC,+,0.00)
mm_77889.1	chr9	7346031	7346231	+	1	NA	NA	NA	-1243	NM_001320076	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.422886	
mm_98454.1	chr11	94946213	94946413	+	1	NA	NA	NA	10089	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.005000	0.512438	-46(GTTTTTAGGGTG,+,0.00)
mm_83843.1	chr9	54474010	54474210	-	1	NA	NA	NA	27516	NM_172771	235380	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.005000	0.373134	
mm_30536.1	chr4	3574846	3575046	+	1	NA	NA	NA	67	NM_054089	116940	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	0.125000	0.671642	
mm_172303.1	chr7	104315244	104315444	-	1	NA	NA	NA	151	NM_023835	76681	Mm.458309	NM_023835	ENSMUSG00000066258	Trim12a	2310043C01Rik|Trim12	tripartite motif-containing 12A	protein-coding	0.025000	0.467662	
mm_87825.1	chr10	60350600	60350800	+	1	NA	NA	NA	3849	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.005000	0.348259	-47(GGCCATAAATAG,-,0.00)
mm_25821.1	chr3	127916067	127916267	+	1	NA	NA	NA	-4	NR_040552	329753	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	0.000000	0.512438	
mm_124215.1	chr14	100189482	100189682	-	1	NA	NA	NA	-39786	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.025000	0.547264	
mm_140292.1	chr17	85620682	85620882	+	1	NA	NA	NA	-52	NM_011381	20473	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0.050000	0.507463	
mm_142374.1	chr17	44716642	44716842	-	1	NA	NA	NA	19434	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.015000	0.318408	17(CCCTTTATAAAG,+,0.00),17(CCCTTTATAAAG,-,0.00),19(CTTTATAAAGAG,+,0.00)
mm_157659.1	chrX	57339138	57339338	-	1	NA	NA	NA	-509	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	0.020000	0.447761	-31(GCTTAAATGCAG,+,0.00)
mm_134289.1	chr16	14218805	14219005	-	1	NA	NA	NA	55630	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.015000	0.512438	
mm_150259.1	chr19	34192702	34192902	+	1	NA	NA	NA	532	NM_029682	76630	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.055000	0.601990	
mm_90516.1	chr10	128043349	128043549	+	1	NA	NA	NA	8103	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.005000	0.477612	
mm_46872.1	chr5	113832404	113832604	-	1	NA	NA	NA	-2003	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.025000	0.621891	
mm_15894.1	chr2	164946968	164947168	+	1	NA	NA	NA	-1151	NM_013599	17395	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.020000	0.547264	
mm_51262.1	chr6	72097608	72097808	+	1	NA	NA	NA	100	NM_011375	20454	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.120000	0.766169	
mm_160043.1	chr6	140041395	140041595	+	1	NA	NA	NA	-30	NM_007605	12344	Mm.12817	NM_007605	ENSMUSG00000041791	Capza3	510-4|Cappa3|Gsg3|Tex8|repro32	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding	0.010000	0.447761	
mm_69124.1	chr7	127026369	127026569	-	1	NA	NA	NA	10	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.135000	0.825871	
mm_8266.1	chr1	139376927	139377127	-	1	NA	NA	NA	49	NM_133239	170788	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	0.005000	0.547264	
mm_89425.1	chr10	90934678	90934878	+	1	NA	NA	NA	104935	NM_001347053	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.040000	0.402985	
mm_161213.1	chr13	64758390	64758590	-	1	NA	NA	NA	145398	NM_001081129	238680	Mm.390590	NM_001081129	ENSMUSG00000033063	Cntnap3	-	contactin associated protein-like 3	protein-coding	0.000000	0.313433	58(GTTTTTAAACCA,+,0.00)
mm_165777.1	chr3	129332430	129332630	-	1	NA	NA	NA	219	NM_007934	13809	Mm.1193	NM_007934	ENSMUSG00000028024	Enpep	6030431M22Rik|APA|Bp-1/6C3|Ly-51|Ly51	glutamyl aminopeptidase	protein-coding	0.025000	0.472637	84(CTGCATTAAAGG,-,0.00)
mm_165039.1	chr19	38480924	38481124	+	1	NA	NA	NA	-43173	NM_019588	74055	Mm.34031	NM_019588	ENSMUSG00000024998	Plce1	4933403A21Rik|PLCepsilon|Plce|mKIAA1516	phospholipase C, epsilon 1	protein-coding	0.160000	0.825871	
mm_163682.1	chr13	93563209	93563409	+	1	NA	NA	NA	-63501	NM_021310	57748	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	0.000000	0.537313	
mm_41087.1	chr5	87682104	87682304	+	1	NA	NA	NA	15996	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.333333	
mm_31710.1	chr4	62619630	62619830	+	1	NA	NA	NA	58	NM_134257	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.040000	0.626866	
mm_45017.1	chr5	38546368	38546568	-	1	NA	NA	NA	15127	NM_011715	22388	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0.025000	0.432836	
mm_35140.1	chr4	11386644	11386844	-	1	NA	NA	NA	34	NM_001347052	207920	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	0.055000	0.616915	
mm_107557.1	chr12	41263136	41263336	+	1	NA	NA	NA	222821	NM_001271708	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.015000	0.388060	
mm_162887.1	chr10	107705118	107705318	+	1	NA	NA	NA	14809	NM_001081432	237523	Mm.391418	NM_001081432	ENSMUSG00000035916	Ptprq	-	protein tyrosine phosphatase, receptor type, Q	protein-coding	0.005000	0.412935	
mm_81983.1	chr9	121380568	121380768	+	1	NA	NA	NA	13710	NM_175114	67095	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.030000	0.492537	
mm_136150.1	chr16	87612462	87612662	-	1	NA	NA	NA	59232	NM_144854	224419	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	0.030000	0.442786	
mm_12243.1	chr2	68863199	68863399	+	1	NA	NA	NA	1858	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.005000	0.442786	55(CCACTTTAAAGG,-,0.00),56(CACTTTAAAGGA,-,0.00)
mm_157298.1	chrX	20928008	20928208	-	1	NA	NA	NA	3447	NM_008823	18636	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	0.010000	0.577114	
mm_147434.1	chr18	46465700	46465900	-	1	NA	NA	NA	16	NR_045438	72076	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.105000	0.706468	
mm_24216.1	chr3	88646775	88646975	+	1	NA	NA	NA	6267	NM_181817	242093	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0.015000	0.542289	
mm_158522.1	chrX	143827297	143827497	-	1	NA	NA	NA	15	NM_007603	12338	Mm.30290	NM_007603	ENSMUSG00000067276	Capn6	-	calpain 6	protein-coding	0.020000	0.542289	
mm_79219.1	chr9	49340298	49340498	+	1	NA	NA	NA	-264	NM_010077	13489	Mm.41970	NM_010077	ENSMUSG00000032259	Drd2	D2R|Drd-2	dopamine receptor D2	protein-coding	0.135000	0.800995	
mm_62050.1	chr7	92420689	92420889	+	1	NA	NA	NA	-140360	NM_025515	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.030000	0.383085	
mm_11724.1	chr2	36254593	36254793	+	1	NA	NA	NA	24267	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.000000	0.412935	-73(GCTTTTAAGCTA,+,0.00)
mm_40436.1	chr5	53590391	53590591	+	1	NA	NA	NA	5	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.140000	0.711443	
mm_101386.1	chr11	23895144	23895344	-	1	NA	NA	NA	26	NM_172555	216578	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0.075000	0.631841	
mm_6459.1	chr1	74026839	74027039	-	1	NA	NA	NA	97508	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.025000	0.567164	-100(TTCCATAAAAGG,-,0.00),-98(CCATAAAAGGGG,+,0.00)
mm_114300.1	chr13	59419487	59419687	+	1	NA	NA	NA	124864	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.025000	0.427861	
mm_120145.1	chr14	60386419	60386619	+	1	NA	NA	NA	8233	NM_001164705	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.005000	0.402985	
mm_79655.1	chr9	59653513	59653713	+	1	NA	NA	NA	-2755	NM_011099	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.005000	0.492537	
mm_159166.1	chr2	92230734	92230934	+	1	NA	NA	NA	9272	NM_001109690	192285	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0.005000	0.333333	
mm_31014.1	chr4	40721044	40721244	+	1	NA	NA	NA	1173	NR_077221	622208	Mm.471544	NR_077221		Gm6297	-	predicted gene 6297	ncRNA	0.025000	0.442786	
mm_102163.1	chr11	53769664	53769864	-	1	NA	NA	NA	-250	NM_001159393	16362	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.055000	0.656716	
mm_85951.1	chr9	112118542	112118742	-	1	NA	NA	NA	69	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.040000	0.597015	
mm_160892.1	chr11	70654462	70654662	-	1	NA	NA	NA	88	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.095000	0.711443	
mm_64091.1	chr7	140968129	140968329	+	1	NA	NA	NA	153	NM_001112715	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding	0.025000	0.537313	
mm_2866.1	chr1	131743920	131744120	+	1	NA	NA	NA	-2	NM_177243	320718	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	0.030000	0.582090	
mm_128802.1	chr15	66940123	66940323	-	1	NA	NA	NA	29418	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.030000	0.537313	
mm_161774.1	chr17	37530087	37530287	+	1	NA	NA	NA	230	NM_001005485	545205	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	0.000000	0.432836	
mm_85494.1	chr9	106136260	106136460	-	1	NA	NA	NA	-17764	NR_029549	387153		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	0.000000	0.427861	
mm_151645.1	chr19	4042158	4042358	-	1	NA	NA	NA	-37	NM_181796	14869	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	0.040000	0.587065	-11(CCCCTTATAAGG,-,0.00),-9(CCTTATAAGGCT,+,0.00)
mm_3113.1	chr1	134574372	134574572	+	1	NA	NA	NA	14294	NM_152895	75605	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0.000000	0.393035	
mm_126486.1	chr15	81616668	81616868	+	1	NA	NA	NA	30554	NM_177821	328572	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.015000	0.422886	
mm_92607.1	chr10	80117888	80118088	-	1	NA	NA	NA	2185	NM_001301854	20869	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.005000	0.592040	
mm_170745.1	chr2	155530949	155531149	-	1	NA	NA	NA	13006	NM_019811	60525	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	0.010000	0.363184	
mm_49962.1	chr6	40643428	40643628	+	1	NA	NA	NA	14697	NM_001171003	232714	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding	0.005000	0.303483	
mm_13084.1	chr2	91207718	91207918	+	1	NA	NA	NA	4906	NM_007387	11432	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.010000	0.437811	
mm_25250.1	chr3	104456524	104456724	+	1	NA	NA	NA	55294	NM_001310698	269473	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0.005000	0.343284	
mm_100690.1	chr11	3526364	3526564	-	1	NA	NA	NA	11780	NM_053267	114679	Mm.34046	NM_053267	ENSMUSG00000075702	Selenom	1500040L08Rik|A230103K18|Selm|Sepm	selenoprotein M	protein-coding	0.015000	0.592040	
mm_91823.1	chr10	56115459	56115659	-	1	NA	NA	NA	8642	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding	0.095000	0.681592	
mm_42834.1	chr5	122102765	122102965	+	1	NA	NA	NA	1885	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.020000	0.547264	
mm_5515.1	chr1	37540925	37541125	-	1	NA	NA	NA	-9	NM_173870	269181	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.145000	0.825871	
mm_95328.1	chr11	46739734	46739934	+	1	NA	NA	NA	-389	NM_001166632	171283	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	0.020000	0.447761	
mm_51893.1	chr6	90619008	90619208	+	1	NA	NA	NA	-138	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.025000	0.616915	
mm_112802.1	chr13	20473002	20473202	+	1	NA	NA	NA	112	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.025000	0.532338	
mm_149949.1	chr19	27344676	27344876	+	1	NA	NA	NA	22157	NM_183179	240595	Mm.269759	NM_183179	ENSMUSG00000047298	Kcnv2	KV11.1	potassium channel, subfamily V, member 2	protein-coding	0.000000	0.477612	-91(GAACATATAAGG,-,0.00)
mm_17167.1	chr2	25291574	25291774	-	1	NA	NA	NA	454	NM_001242940	320354	Mm.445875	NM_001242940		Grin1os	E130003G02Rik	glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand	protein-coding	0.020000	0.626866	
mm_56028.1	chr6	86607569	86607769	-	1	NA	NA	NA	-20505	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.020000	0.567164	
mm_1609.1	chr1	74382374	74382574	+	1	NA	NA	NA	7271	NM_013612	18173	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.005000	0.452736	4(GACTCTATAGGG,-,0.00),14(GGACTTTAAAGC,-,0.00)
mm_78347.1	chr9	25303650	25303850	+	1	NA	NA	NA	51311	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.000000	0.393035	
mm_65681.1	chr7	28338610	28338810	-	1	NA	NA	NA	9	NM_013676	20924	Mm.285906	NM_013676	ENSMUSG00000003435	Supt5	AL033283|AL033321|AU019549|Spt5|Supt5h	suppressor of Ty 5	protein-coding	0.115000	0.691542	
mm_148536.1	chr19	4602977	4603177	+	1	NA	NA	NA	8758	NM_008797	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.045000	0.587065	
mm_83468.1	chr9	45272267	45272467	-	1	NA	NA	NA	-3218	NM_001324486	16154	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0.015000	0.537313	
mm_127224.1	chr15	99393870	99394070	+	1	NA	NA	NA	751	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.010000	0.452736	
mm_153678.1	chr19	44396489	44396689	-	1	NA	NA	NA	11120	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.005000	0.462687	
mm_130368.1	chr15	97808323	97808523	-	1	NA	NA	NA	6440	NM_001204281	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.025000	0.621891	
mm_33184.1	chr4	126103880	126104080	+	1	NA	NA	NA	23	NM_001145827	74178	Mm.440269	NM_028800	ENSMUSG00000042608	Stk40	2310004N11Rik|AI428792	serine/threonine kinase 40	protein-coding	0.120000	0.766169	
mm_47901.1	chr5	134915378	134915578	-	1	NA	NA	NA	52	NM_020504	57255	Mm.86652	NM_020504	ENSMUSG00000008843	Cldn13	2500004B14Rik	claudin 13	protein-coding	0.020000	0.522388	
mm_139768.1	chr17	64634458	64634658	+	1	NA	NA	NA	32909	NM_008549	17158	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.005000	0.363184	-39(GGCTTTTAATGA,-,0.00)
mm_62223.1	chr7	98490477	98490677	+	1	NA	NA	NA	-3645	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.010000	0.562189	
mm_18499.1	chr2	62610417	62610617	-	1	NA	NA	NA	35738	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.010000	0.422886	
mm_14165.1	chr2	126607680	126607880	+	1	NA	NA	NA	10898	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.015000	0.482587	
mm_41470.1	chr5	91449936	91450136	+	1	NA	NA	NA	-47042	NM_007568	12223	Mm.2024	NM_007568	ENSMUSG00000082361	Btc	Bcn	betacellulin, epidermal growth factor family member	protein-coding	0.010000	0.487562	
mm_159037.1	chr1	179961056	179961256	+	1	NA	NA	NA	67	NM_001033285	226751	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	0.030000	0.447761	-82(GCATTTAAAAGA,-,0.00)
mm_105175.1	chr11	101784723	101784923	-	1	NA	NA	NA	487	NM_008815	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.080000	0.641791	
mm_18843.1	chr2	75191755	75191955	-	1	NA	NA	NA	252324	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA	0.040000	0.492537	
mm_153042.1	chr19	32061352	32061552	-	1	NA	NA	NA	41688	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.005000	0.442786	
mm_153878.1	chr19	46908547	46908747	-	1	NA	NA	NA	53704	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.005000	0.427861	
mm_4780.1	chr1	183600667	183600867	+	1	NA	NA	NA	181519	NM_001308052	78772	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0.020000	0.507463	
mm_105206.1	chr11	102101219	102101419	-	1	NA	NA	NA	-19	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.005000	0.587065	-34(GACTATAAAGGG,-,0.00)
mm_161417.1	chr15	33090153	33090353	+	1	NA	NA	NA	7124	NM_176073	54381	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0.005000	0.368159	-39(CTTTTTAGAGAT,+,0.00)
mm_26179.1	chr3	138290512	138290712	+	1	NA	NA	NA	12967	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.015000	0.447761	36(CTCTTTAGAGAC,+,0.00)
mm_5489.1	chr1	36931963	36932163	-	1	NA	NA	NA	7464	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.000000	0.393035	
mm_161523.1	chr15	100551658	100551858	-	1	NA	NA	NA	250	NM_033476	21422	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	0.110000	0.691542	
mm_37080.1	chr4	116371634	116371834	-	1	NA	NA	NA	92447	NM_001042743	17776	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0.000000	0.417910	
mm_151141.1	chr19	53062221	53062421	+	1	NA	NA	NA	-13931	NR_045320	78457	Mm.76932	NR_045320	ENSMUSG00000099988	1700054A03Rik	-	RIKEN cDNA 1700054A03 gene	ncRNA	0.000000	0.487562	
mm_122215.1	chr14	32201798	32201998	-	1	NA	NA	NA	-7	NM_016897	53600	Mm.303703	NM_016897	ENSMUSG00000013701	Timm23	Tim23	translocase of inner mitochondrial membrane 23	protein-coding	0.120000	0.671642	
mm_171415.1	chr4	130360048	130360248	+	1	NA	NA	NA	16	NM_025645	66585	Mm.423019	NM_025645	ENSMUSG00000074088	Snrnp40	0610009C03Rik|Prp8bp|Wdr57	small nuclear ribonucleoprotein 40 (U5)	protein-coding	0.080000	0.597015	
mm_86536.1	chr10	7861997	7862197	+	1	NA	NA	NA	25716	NR_039563	100628581		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0.015000	0.502488	
mm_54639.1	chr6	38819189	38819389	-	1	NA	NA	NA	18022	NM_001136065	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.015000	0.427861	
mm_2059.1	chr1	87470219	87470419	+	1	NA	NA	NA	55	NM_028473	73234	Mm.7310	NM_028473	ENSMUSG00000026258	3110079O15Rik	Snorc	RIKEN cDNA 3110079O15 gene	protein-coding	0.030000	0.606965	
mm_122594.1	chr14	50930172	50930372	-	1	NA	NA	NA	577	NM_001310506	219024	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161	transmembrane protein 55b	protein-coding	0.045000	0.552239	
mm_55830.1	chr6	83124736	83124936	-	1	NA	NA	NA	193	NM_023547	70020	Mm.27814	NM_023547	ENSMUSG00000030034	Ino80b	2510009I23Rik|HMG1YL4|Hmga1l4|Papa1|Znhit4	INO80 complex subunit B	protein-coding	0.045000	0.592040	
mm_119894.1	chr14	54938334	54938534	+	1	NA	NA	NA	1937	NM_029390	67272	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	0.010000	0.477612	
mm_127277.1	chr15	99725692	99725892	+	1	NA	NA	NA	174	NM_183256	66379	Mm.5265	NM_183256	ENSMUSG00000023020	Cox14	2310016M24Rik|AA959804	cytochrome c oxidase assembly protein 14	protein-coding	0.110000	0.721393	
mm_28621.1	chr3	95025257	95025457	-	1	NA	NA	NA	-10119	NM_030074	78266	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	0.000000	0.512438	-30(CACTATAAGAGG,-,0.00)
mm_110385.1	chr12	40247943	40248143	-	1	NA	NA	NA	24679	NR_045157	629820	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.005000	0.477612	
mm_102709.1	chr11	67011559	67011759	-	1	NA	NA	NA	-13495	NM_001291042	338369	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	0.010000	0.402985	-31(GTGCTTATAAGA,-,0.00),-29(GCTTATAAGAGG,-,0.00)
mm_109253.1	chr12	109459561	109459761	+	1	NA	NA	NA	6206	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.055000	0.606965	
mm_171117.1	chr3	138844696	138844896	-	1	NA	NA	NA	102588	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.025000	0.502488	
mm_80384.1	chr9	75441447	75441647	+	1	NA	NA	NA	23	NM_001039522	235497	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0.095000	0.597015	
mm_37517.1	chr4	124299769	124299969	-	1	NA	NA	NA	186090	NR_040774	78460	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA	0.030000	0.592040	
mm_123282.1	chr14	61436705	61436905	-	1	NA	NA	NA	3142	NM_008466	16648	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0.005000	0.333333	
mm_44053.1	chr5	147957234	147957434	+	1	NA	NA	NA	14	NM_029920	77521	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	0.135000	0.776119	
mm_101176.1	chr11	16994657	16994857	-	1	NA	NA	NA	13961	NM_019549	56193	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.025000	0.437811	
mm_105706.1	chr11	108273606	108273806	-	1	NA	NA	NA	70182	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.020000	0.472637	
mm_78710.1	chr9	41396180	41396380	+	1	NA	NA	NA	19754	NR_131928	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.010000	0.353234	
mm_82464.1	chr9	15710124	15710324	-	1	NA	NA	NA	455	NM_172289	234967	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.050000	0.606965	
mm_59868.1	chr7	30193843	30194043	+	1	NA	NA	NA	1105	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.085000	0.726368	
mm_77925.1	chr9	7352871	7353071	+	1	NA	NA	NA	5597	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.452736	
mm_109937.1	chr12	11204281	11204481	-	1	NA	NA	NA	121	NR_131084	77442	Mm.159922	NR_131083		9530020I12Rik	-	RIKEN cDNA 9530020I12 gene	ncRNA	0.040000	0.517413	
mm_170892.1	chr2	27406927	27407127	-	1	NA	NA	NA	20581	NR_133905	22325	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.010000	0.542289	
mm_32524.1	chr4	108847811	108848011	+	1	NA	NA	NA	54	NM_029571	100087	Mm.440007	NM_029571	ENSMUSG00000073775	Kti12	1110001A12Rik|AI326810|AU014758	KTI12 homolog, chromatin associated	protein-coding	0.110000	0.651741	
mm_34352.1	chr4	144529450	144529650	+	1	NA	NA	NA	9728	NM_198662	381572	Mm.184290	NM_198662	ENSMUSG00000028593	9430007A20Rik	Aadacl4|Gm1034	RIKEN cDNA 9430007A20 gene	protein-coding	0.005000	0.378109	
mm_110714.1	chr12	69475433	69475633	-	1	NA	NA	NA	17	NR_038060	76062	Mm.380755	NR_038060		5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0.035000	0.542289	
mm_131584.1	chr16	18429714	18429914	+	1	NA	NA	NA	-3098	NM_001111062	12846	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.015000	0.542289	
mm_42390.1	chr5	114936936	114937136	+	1	NA	NA	NA	-5166	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.050000	0.547264	
mm_452.1	chr1	36104766	36104966	+	1	NA	NA	NA	36466	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.005000	0.517413	
mm_56178.1	chr6	88160949	88161149	-	1	NA	NA	NA	-37615	NM_008090	14461	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.005000	0.457711	
mm_81461.1	chr9	109849207	109849407	+	1	NA	NA	NA	149	NM_009921	12796	Mm.3834	NM_009921	ENSMUSG00000038357	Camp	CAP18|Cnlp|Cramp|FALL39|MCLP	cathelicidin antimicrobial peptide	protein-coding	0.015000	0.577114	
mm_25395.1	chr3	107219619	107219819	+	1	NA	NA	NA	2013	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.522388	
mm_83925.1	chr9	56621234	56621434	-	1	NA	NA	NA	14314	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.025000	0.631841	
mm_7798.1	chr1	131525231	131525431	-	1	NA	NA	NA	2030	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.050000	0.611940	
mm_21396.1	chr2	157569410	157569610	-	1	NA	NA	NA	-3149	NM_016916	53619	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0.010000	0.388060	-4(TTTTTTATAGGA,+,0.00)
mm_25507.1	chr3	109573909	109574109	+	1	NA	NA	NA	2	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.025000	0.477612	
mm_38663.1	chr4	144438663	144438863	-	1	NA	NA	NA	9	NM_027056	69364	Mm.158267	NM_027056	ENSMUSG00000028589	1700012P22Rik	-	RIKEN cDNA 1700012P22 gene	protein-coding	0.000000	0.472637	
mm_102331.1	chr11	57828957	57829157	-	1	NA	NA	NA	3090	NM_008213	15110	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed transcript 1	protein-coding	0.030000	0.547264	
mm_63786.1	chr7	132405872	132406072	+	1	NA	NA	NA	-88817	NM_029935	77590	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.025000	0.532338	
mm_53372.1	chr6	129416656	129416856	+	1	NA	NA	NA	7894	NM_172732	232414	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0.000000	0.482587	
mm_147580.1	chr18	56468901	56469101	-	1	NA	NA	NA	36869	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.020000	0.407960	-27(ATTTTTATAGCC,+,0.00)
mm_173060.1	chrX	127547991	127548191	-	1	NA	NA	NA	153798	NR_003646	245598	Mm.72281	NM_207250	ENSMUSG00000049815	4921511C20Rik	Gm383	high density lipoprotein (HDL) binding protein pseudogene	pseudo	0.020000	0.472637	-32(GCCCTTATAAGC,-,0.00),-30(CCTTATAAGCAC,+,0.00)
mm_39916.1	chr5	31485762	31485962	+	1	NA	NA	NA	3	NM_026296	67656	Mm.23355	NM_026296	ENSMUSG00000029138	4930548H24Rik	AI427865	RIKEN cDNA 4930548H24 gene	protein-coding	0.000000	0.502488	
mm_149707.1	chr19	21653007	21653207	+	1	NA	NA	NA	-202	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.095000	0.661692	
mm_48209.1	chr5	137600959	137601159	-	1	NA	NA	NA	0	NM_030037	68929	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	0.060000	0.522388	
mm_122018.1	chr14	27428569	27428769	-	1	NA	NA	NA	-178	NM_028945	218850	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0.095000	0.671642	
mm_50610.1	chr6	49586731	49586931	+	1	NA	NA	NA	191227	NM_029916	77485	Mm.128054	NM_029916	ENSMUSG00000023403	Stk31	C330007K24Rik	serine threonine kinase 31	protein-coding	0.010000	0.402985	17(AGCTCTAAAAAG,-,0.00)
mm_126146.1	chr15	78349081	78349281	+	1	NA	NA	NA	582	NR_106138	102466845		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0.010000	0.582090	
mm_50760.1	chr6	53573256	53573456	+	1	NA	NA	NA	-18	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.015000	0.477612	
mm_89161.1	chr10	86123378	86123578	+	1	NA	NA	NA	27624	NR_038024	78170	Mm.444790	NR_038024		4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0.005000	0.532338	
mm_44972.1	chr5	36815441	36815641	-	1	NA	NA	NA	15108	NM_008550	17160	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0.035000	0.601990	
mm_121987.1	chr14	26442557	26442757	-	1	NA	NA	NA	85110	NR_038005	71106	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.015000	0.442786	
mm_123321.1	chr14	62760795	62760995	-	1	NA	NA	NA	217	NM_008715	18130	Mm.319684	NM_008715	ENSMUSG00000035161	Ints6	2900075H24Rik|AI480962|DICE1|Ddx26|HDB|Notch2l	integrator complex subunit 6	protein-coding	0.095000	0.751244	
mm_106337.1	chr11	118393006	118393206	-	1	NA	NA	NA	8825	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.015000	0.547264	
mm_3599.1	chr1	151571335	151571535	+	1	NA	NA	NA	62	NM_022018	63913	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.075000	0.676617	
mm_32040.1	chr4	95967031	95967231	+	1	NA	NA	NA	-96	NR_045777	319247	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0.065000	0.666667	
mm_108683.1	chr12	86832598	86832798	+	1	NA	NA	NA	52116	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.020000	0.477612	57(GCTTTTCTAGCT,+,0.00)
mm_152775.1	chr19	21170853	21171053	-	1	NA	NA	NA	66243	NR_126458	75354	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.005000	0.492537	
mm_83894.1	chr9	56136166	56136366	-	1	NA	NA	NA	24804	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.020000	0.422886	27(GTCCTTTTAAAG,-,0.00),28(TCCTTTTAAAGA,-,0.00),29(CCTTTTAAAGAA,+,0.00)
mm_21137.1	chr2	154213950	154214150	-	1	NA	NA	NA	-9692	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.025000	0.592040	
mm_57374.1	chr6	124812803	124813003	-	1	NA	NA	NA	1393	NM_009415	21991	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.035000	0.517413	
mm_107878.1	chr12	69986321	69986521	+	1	NA	NA	NA	581	NM_022028	64010	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0.060000	0.537313	
mm_11010.1	chr2	26580956	26581156	+	1	NA	NA	NA	0	NM_178444	353156	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0.020000	0.616915	
mm_158450.1	chrX	140543048	140543248	-	1	NA	NA	NA	39	NM_010286	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.015000	0.542289	-72(TCCTATATAAAG,-,0.00)
mm_60026.1	chr7	30957036	30957236	+	1	NA	NA	NA	-333	NM_011680	22282	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0.145000	0.731343	
mm_11248.1	chr2	29890440	29890640	+	1	NA	NA	NA	477	NM_013615	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.045000	0.641791	
mm_53169.1	chr6	125342437	125342637	+	1	NA	NA	NA	-7186	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.010000	0.517413	
mm_143236.1	chr17	63500159	63500359	-	1	NA	NA	NA	321	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.145000	0.771144	
mm_3844.1	chr1	160044810	160045010	+	1	NA	NA	NA	530	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.015000	0.527363	
mm_50638.1	chr6	51329805	51330005	+	1	NA	NA	NA	-49805	NR_110455	625167	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	0.005000	0.477612	
mm_84074.1	chr9	58201808	58202008	-	1	NA	NA	NA	-109	NM_001161540	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.090000	0.522388	
mm_94138.1	chr10	128704914	128705114	-	1	NA	NA	NA	37	NM_183417	12566	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	0.080000	0.661692	
mm_170096.1	chr17	39842899	39843099	+	1	NA	NA	NA	2	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.050000	0.492537	
mm_58780.1	chr7	16061807	16062007	+	1	NA	NA	NA	-9938	NM_001347559	666528	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.095000	0.716418	
mm_28545.1	chr3	92870120	92870320	-	1	NA	NA	NA	-15	NM_025621	66533	Mm.144259	NM_025621	ENSMUSG00000090314	2310050C09Rik	-	RIKEN cDNA 2310050C09 gene	protein-coding	0.010000	0.447761	-32(CCCTATAAAAAG,-,0.00)
mm_168915.1	chr1	25661951	25662151	+	1	NA	NA	NA	167656	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.020000	0.447761	
mm_107856.1	chr12	69538193	69538393	+	1	NA	NA	NA	44735	NM_001033236	207965	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0.035000	0.562189	
mm_96432.1	chr11	67294457	67294657	+	1	NA	NA	NA	17433	NM_177369	17885	Mm.340163	NM_177369	ENSMUSG00000055775	Myh8	4832426G23Rik|AI327267|MHCp|MyHC-pn|Myhs-p|Myhsp	myosin, heavy polypeptide 8, skeletal muscle, perinatal	protein-coding	0.020000	0.517413	
mm_91797.1	chr10	53398651	53398851	-	1	NA	NA	NA	-18900	NM_001204983	100038725	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	ENSMUSG00000038594|Gm9766	centrosomal protein 85-like	protein-coding	0.040000	0.606965	
mm_152660.1	chr19	12796027	12796227	-	1	NA	NA	NA	-4	NM_053009	109910	Mm.290924	NM_053009	ENSMUSG00000024695	Zfp91	9130014I08Rik|A530054C17Rik|AL024263|AW545902|Pzf|Zfp-91	zinc finger protein 91	protein-coding	0.080000	0.562189	
mm_79852.1	chr9	64947608	64947808	+	1	NA	NA	NA	3899	NM_144813	214111	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	0.005000	0.522388	
mm_75275.1	chr8	40898955	40899155	-	1	NA	NA	NA	-27178	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.060000	0.567164	
mm_11424.1	chr2	31887186	31887386	+	1	NA	NA	NA	5	NM_011836	23928	Mm.302362	NM_011836	ENSMUSG00000026840	Lamc3	AI562206|AW240805	laminin gamma 3	protein-coding	0.070000	0.681592	
mm_28583.1	chr3	94369535	94369735	-	1	NA	NA	NA	-3159	NM_011281	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.005000	0.462687	
mm_62267.1	chr7	99535206	99535406	+	1	NA	NA	NA	-180	NM_178220	109689	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	0.050000	0.552239	
mm_153023.1	chr19	31451462	31451662	-	1	NA	NA	NA	212808	NM_011160	19091	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0.005000	0.323383	-72(GTTTTTAGGGCA,+,0.00)
mm_80955.1	chr9	103007884	103008084	+	1	NA	NA	NA	-505	NM_033314	24059	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	0.045000	0.577114	
mm_22925.1	chr3	31120357	31120557	+	1	NA	NA	NA	25399	NM_001039090	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.015000	0.378109	
mm_103426.1	chr11	75626625	75626825	-	1	NA	NA	NA	-4295	NM_008916	19062	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.010000	0.467662	
mm_163746.1	chr13	119755720	119755920	-	1	NA	NA	NA	62	NM_175538	245269	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0.090000	0.681592	
mm_47012.1	chr5	115479548	115479748	-	1	NA	NA	NA	4649	NM_001167691	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.040000	0.547264	-32(CCTTTAATAGAC,+,0.00)
mm_133140.1	chr16	69863586	69863786	+	1	NA	NA	NA	58	NM_173069	224318	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0.015000	0.512438	-40(CTCTTTATAAAC,-,0.00),-38(CTTTATAAACTC,+,0.00)
mm_120693.1	chr14	70776127	70776327	+	1	NA	NA	NA	1846	NM_010071	13449	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip	docking protein 2	protein-coding	0.025000	0.572139	
mm_17735.1	chr2	32576163	32576363	-	1	NA	NA	NA	545	NM_198191	227733	Mm.78923	NM_198191	ENSMUSG00000046854	Pip5kl1	BC028795	phosphatidylinositol-4-phosphate 5-kinase-like 1	protein-coding	0.010000	0.502488	
mm_96181.1	chr11	61653264	61653464	+	1	NA	NA	NA	43	NM_027817	71520	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.025000	0.597015	
mm_153028.1	chr19	31664512	31664712	-	1	NA	NA	NA	-242	NM_011160	19091	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0.085000	0.691542	
mm_50781.1	chr6	53697930	53698130	+	1	NA	NA	NA	122795	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.020000	0.363184	
mm_147174.1	chr18	36734803	36735003	-	1	NA	NA	NA	-167	NM_028036	71983	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	0.045000	0.507463	-34(GCTCATAAAAGA,-,0.00)
mm_116038.1	chr13	26770066	26770266	-	1	NA	NA	NA	-1	NM_008232	15192	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	hepatoma derived growth factor-like 1	protein-coding	0.050000	0.582090	
mm_48129.1	chr5	137149795	137149995	-	1	NA	NA	NA	-33688	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.010000	0.497512	
mm_63329.1	chr7	126949938	126950138	+	1	NA	NA	NA	-457	NM_001039645	233879	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0.060000	0.631841	
mm_93080.1	chr10	89506541	89506741	-	1	NA	NA	NA	17	NM_001163700	20186	Mm.3095	NM_009108	ENSMUSG00000047638	Nr1h4	AI957360|Fxr|HRR1|RIP14|Rxrip14	nuclear receptor subfamily 1, group H, member 4	protein-coding	0.030000	0.467662	
mm_96414.1	chr11	67255497	67255697	+	1	NA	NA	NA	17785	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.020000	0.532338	
mm_133651.1	chr16	91804532	91804732	+	1	NA	NA	NA	75261	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.025000	0.477612	
mm_167329.1	chr8	70523074	70523274	-	1	NA	NA	NA	6	NM_029366	75620	Mm.482129	NM_029366	ENSMUSG00000055553	Kxd1	0610030B01Rik|2810422J05Rik|C78305	KxDL motif containing 1	protein-coding	0.115000	0.641791	
mm_53613.1	chr6	139896613	139896813	+	1	NA	NA	NA	55268	NM_011084	18705	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	protein-coding	0.010000	0.353234	
mm_90292.1	chr10	125308872	125309072	+	1	NA	NA	NA	19563	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.010000	0.462687	
mm_47682.1	chr5	128953217	128953417	-	1	NA	NA	NA	169	NM_001081388	231760	Mm.233996	NM_001081388	ENSMUSG00000029420	Rimbp2	A930033C01Rik|mKIAA0318	RIMS binding protein 2	protein-coding	0.030000	0.532338	
mm_169544.1	chr15	102100123	102100323	-	1	NA	NA	NA	-2765	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.090000	0.711443	
mm_89468.1	chr10	93468047	93468247	+	1	NA	NA	NA	14751	NM_008517	16993	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	0.000000	0.467662	
mm_96084.1	chr11	60139891	60140091	+	1	NA	NA	NA	-91	NM_001037764	19377	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.095000	0.706468	
mm_98715.1	chr11	96318584	96318784	+	1	NA	NA	NA	417	NM_010459	15412	Mm.3546	NM_010459	ENSMUSG00000038692	Hoxb4	Hox-2.6	homeobox B4	protein-coding	0.045000	0.492537	
mm_93538.1	chr10	115384312	115384512	-	1	NA	NA	NA	23	NM_025780	66816	Mm.32314	NM_025780	ENSMUSG00000020137	Thap2	2900040O07Rik|9030625G08Rik|AI450385|AI649097	THAP domain containing, apoptosis associated protein 2	protein-coding	0.085000	0.656716	
mm_101297.1	chr11	22246587	22246787	-	1	NA	NA	NA	40108	NM_153078	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0.005000	0.348259	
mm_156349.1	chrX	139217079	139217279	+	1	NA	NA	NA	13	NM_001164632	245631	Mm.131001	NM_175541	ENSMUSG00000042515	Mum1l1	9430086K21Rik	melanoma associated antigen (mutated) 1-like 1	protein-coding	0.055000	0.611940	43(CTGTCTTAAAGC,-,0.00)
mm_89672.1	chr10	97507611	97507811	+	1	NA	NA	NA	25380	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.030000	0.467662	
mm_112212.1	chr12	113428467	113428667	-	1	NA	NA	NA	-60998	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.452736	
mm_103929.1	chr11	83648188	83648388	-	1	NA	NA	NA	1090	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.020000	0.512438	
mm_117517.1	chr13	80960737	80960937	-	1	NA	NA	NA	-3237	NR_015587	319983	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.005000	0.452736	
mm_113206.1	chr13	25055949	25056149	+	1	NA	NA	NA	45	NM_177577	195208	Mm.284719	NM_177577	ENSMUSG00000035910	Dcdc2a	AW492955|Dcdc2|RU2	doublecortin domain containing 2a	protein-coding	0.120000	0.686567	
mm_170085.1	chr17	35479887	35480087	+	1	NA	NA	NA	9898	NM_010391	15007	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	0.030000	0.552239	
mm_34548.1	chr4	149586324	149586524	+	1	NA	NA	NA	-44	NM_001290989	65945	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0.165000	0.815920	
mm_76393.1	chr8	84844100	84844300	-	1	NA	NA	NA	2731	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.020000	0.482587	
mm_21723.1	chr2	164654868	164655068	-	1	NA	NA	NA	-2	NM_001160414	629754	Mm.190489	NM_001160414	ENSMUSG00000074594	Wfdc9	OTTMUSG00000001088	WAP four-disulfide core domain 9	protein-coding	0.010000	0.517413	-9(ACCTCTTAAAGG,-,0.00),-8(CCTCTTAAAGGT,+,0.00)
mm_34912.1	chr4	155705196	155705396	+	1	NA	NA	NA	481	NM_026899	68991	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0.140000	0.666667	
mm_137728.1	chr17	29274051	29274251	+	1	NA	NA	NA	5363	NM_030561	80748	Mm.290116	NM_030561	ENSMUSG00000052712	BC004004	2400006G15Rik	cDNA sequence BC004004	protein-coding	0.025000	0.557214	
mm_98340.1	chr11	93098277	93098477	+	1	NA	NA	NA	-913	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	0.090000	0.696517	
mm_121439.1	chr14	120429721	120429921	+	1	NA	NA	NA	-48640	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.020000	0.417910	
mm_151483.1	chr19	58676418	58676618	+	1	NA	NA	NA	6153	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.025000	0.373134	
mm_154155.1	chr19	58455388	58455588	-	1	NA	NA	NA	-90	NM_010279	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.035000	0.502488	
mm_165200.1	chr2	32713382	32713582	+	1	NA	NA	NA	-510	NR_039536	100628606		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0.075000	0.676617	
mm_71016.1	chr8	32160125	32160325	+	1	NA	NA	NA	8330	NR_046039	666589	Mm.367675	NR_046039		Gm8179	EG666589	predicted gene 8179	ncRNA	0.025000	0.492537	
mm_92291.1	chr10	71980576	71980776	-	1	NA	NA	NA	14	NR_003644	108950	Mm.212793	NM_175390	ENSMUSG00000043859	1700049L16Rik	-	hematological and neurological expressed 1-like pseudogene	pseudo	0.030000	0.557214	
mm_23507.1	chr3	60529341	60529541	+	1	NA	NA	NA	28262	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.025000	0.358209	-82(CCCTTTATATTG,+,0.00)
mm_111814.1	chr12	105683464	105683664	-	1	NA	NA	NA	1677	NM_029654	76559	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	0.015000	0.432836	-95(TATCATAAAAGG,-,0.00)
mm_27614.1	chr3	59220004	59220204	-	1	NA	NA	NA	-9222	NM_028808	74191	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.005000	0.507463	
mm_103988.1	chr11	84828902	84829102	-	1	NA	NA	NA	1	NM_177564	192970	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	0.085000	0.686567	
mm_126507.1	chr15	81802616	81802816	+	1	NA	NA	NA	43	NM_153484	21685	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.030000	0.681592	
mm_161416.1	chr15	30172540	30172740	+	1	NA	NA	NA	47	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.195000	0.810945	
mm_2119.1	chr1	87882598	87882798	+	1	NA	NA	NA	-28399	NR_136921	100503175	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.000000	0.298507	
mm_27387.1	chr3	50628397	50628597	-	1	NA	NA	NA	-184884	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.020000	0.487562	
mm_114752.1	chr13	84348340	84348540	+	1	NA	NA	NA	126144	NM_175187	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	0.040000	0.597015	
mm_14549.1	chr2	132847725	132847925	+	1	NA	NA	NA	91	NM_025646	66586	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	0.025000	0.542289	-32(GCTTTAAAACTC,+,0.00)
mm_2360.1	chr1	92973084	92973284	+	1	NA	NA	NA	65	NM_001104529	64095	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0.005000	0.572139	
mm_95312.1	chr11	46386725	46386925	+	1	NA	NA	NA	2690	NM_001281968	16428	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	0.010000	0.477612	
mm_165330.1	chr2	113996410	113996610	+	1	NA	NA	NA	-17055	NR_028423	320846	Mm.441458	NR_028423	ENSMUSG00000087694	A530058N18Rik	-	RIKEN cDNA A530058N18 gene	ncRNA	0.000000	0.417910	
mm_79497.1	chr9	57117611	57117811	+	1	NA	NA	NA	-13066	NM_028636	73744	Mm.30110	NM_028636	ENSMUSG00000032295	Man2c1	1110025H24Rik	mannosidase, alpha, class 2C, member 1	protein-coding	0.005000	0.393035	
mm_124232.1	chr14	101200284	101200484	-	1	NA	NA	NA	-315	NM_029680	76627	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	0.020000	0.542289	
mm_60302.1	chr7	44055608	44055808	+	1	NA	NA	NA	3418	NM_020268	16619	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	0.015000	0.532338	
mm_163582.1	chr13	34355309	34355509	-	1	NA	NA	NA	-10227	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.005000	0.318408	
mm_86786.1	chr10	20171907	20172107	+	1	NA	NA	NA	23087	NM_001198635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.005000	0.492537	
mm_85845.1	chr9	110645199	110645399	-	1	NA	NA	NA	8862	NM_183276	235627	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0.020000	0.532338	
mm_116260.1	chr13	34182574	34182774	-	1	NA	NA	NA	19710	NM_001110515	69666	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.005000	0.467662	
mm_103740.1	chr11	80081030	80081230	-	1	NA	NA	NA	-139	NM_018776	54394	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.055000	0.606965	
mm_17030.1	chr2	20339302	20339502	-	1	NA	NA	NA	49489	NM_001081006	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.010000	0.432836	
mm_16553.1	chr2	181767264	181767464	+	1	NA	NA	NA	335	NM_001171616	17932	Mm.458718	NM_008665	ENSMUSG00000010505	Myt1	Nzf2|Nzf2a|Nzf2b|Nztf2	myelin transcription factor 1	protein-coding	0.005000	0.452736	
mm_51925.1	chr6	91269942	91270142	+	1	NA	NA	NA	57278	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.025000	0.572139	
mm_104308.1	chr11	91577444	91577644	-	1	NA	NA	NA	11	NM_028547	73470	Mm.67677	NM_028547	ENSMUSG00000046755	Kif2b	1700063D03Rik	kinesin family member 2B	protein-coding	0.025000	0.557214	
mm_98151.1	chr11	87595553	87595753	+	1	NA	NA	NA	3436	NM_133215	170749	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0.090000	0.726368	
mm_131009.1	chr15	103562836	103563036	-	1	NA	NA	NA	2145	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.010000	0.427861	
mm_20361.1	chr2	128294940	128295140	-	1	NA	NA	NA	134311	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.020000	0.522388	2(CTCTCTAAATAG,-,0.00)
mm_167103.1	chr7	110862919	110863119	-	1	NA	NA	NA	-66	NM_053247	114332	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	0.010000	0.462687	
mm_54306.1	chr6	29609525	29609725	-	1	NA	NA	NA	-18	NM_177296	320938	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	0.055000	0.601990	
mm_66063.1	chr7	30820150	30820350	-	1	NA	NA	NA	727	NM_001168512	233079	Mm.97338	NM_146187	ENSMUSG00000051314	Ffar2	GPCR43|Gpr43	free fatty acid receptor 2	protein-coding	0.020000	0.537313	
mm_106999.1	chr12	11279558	11279758	+	1	NA	NA	NA	13772	NM_025695	67241	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	0.010000	0.368159	
mm_22707.1	chr3	19187236	19187436	+	1	NA	NA	NA	7	NM_001253391	67472	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.020000	0.502488	
mm_28790.1	chr3	95995846	95996046	-	1	NA	NA	NA	-107	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.185000	0.830846	
mm_93932.1	chr10	127166893	127167093	-	1	NA	NA	NA	1162	NM_001244618	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.020000	0.597015	
mm_94290.1	chr11	4034985	4035185	+	1	NA	NA	NA	3303	NM_146013	103655	Mm.337476	NM_146013	ENSMUSG00000019368	Sec14l4	AI256582|AW536553|SPF|TAP	SEC14-like lipid binding 4	protein-coding	0.030000	0.597015	
mm_165997.1	chr4	113999417	113999617	-	1	NA	NA	NA	-14	NM_001167876	242627	Mm.484115	NM_001167876	ENSMUSG00000078598	Skint5	OTTMUSG00000008560|Skint-5	selection and upkeep of intraepithelial T cells 5	protein-coding	0.005000	0.388060	84(GCTTTTAGACTT,+,0.00)
mm_80767.1	chr9	95559526	95559726	+	1	NA	NA	NA	-191	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.195000	0.850746	
mm_102802.1	chr11	68859943	68860143	-	1	NA	NA	NA	-6912	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.030000	0.507463	
mm_166019.1	chr4	122673704	122673904	+	1	NA	NA	NA	-15455	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	0.015000	0.467662	
mm_7428.1	chr1	119837224	119837424	-	1	NA	NA	NA	-253	NM_019933	19258	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	0.085000	0.621891	
mm_121770.1	chr14	19874671	19874871	-	1	NA	NA	NA	35846	NR_105025	52512	Mm.483998	NR_105025		D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.030000	0.542289	
mm_23093.1	chr3	37063535	37063735	+	1	NA	NA	NA	-21	NM_009350	21744	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	0.130000	0.716418	
mm_55187.1	chr6	52184039	52184239	-	1	NA	NA	NA	7564	NM_008265	15401	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	0.000000	0.482587	
mm_59299.1	chr7	25152359	25152559	+	1	NA	NA	NA	2	NR_045847	434147	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	0.035000	0.606965	
mm_145982.1	chr18	68227759	68227959	+	1	NA	NA	NA	33114	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0.005000	0.502488	
mm_92951.1	chr10	85184936	85185136	-	1	NA	NA	NA	18	NM_007771	12952	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0.145000	0.751244	
mm_89134.1	chr10	85386730	85386930	+	1	NA	NA	NA	16	NM_028709	74007	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.090000	0.661692	
mm_145192.1	chr18	49835801	49836001	+	1	NA	NA	NA	2904	NM_001081371	240283	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0.000000	0.447761	
mm_32805.1	chr4	117120646	117120846	+	1	NA	NA	NA	4979	NR_024078	78611	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0.085000	0.631841	
mm_51535.1	chr6	83195717	83195917	+	1	NA	NA	NA	9871	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.015000	0.601990	
mm_91966.1	chr10	61383283	61383483	-	1	NA	NA	NA	140	NM_013753	27355	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.120000	0.766169	
mm_124841.1	chr15	9370302	9370502	+	1	NA	NA	NA	34804	NM_144845	223337	Mm.422853	NM_144845	ENSMUSG00000049152	Ugt3a2	AI313915	UDP glycosyltransferases 3 family, polypeptide A2	protein-coding	0.015000	0.497512	
mm_142185.1	chr17	36867038	36867238	-	1	NA	NA	NA	49	NM_001024134	69097	Mm.307027	NM_001024134	ENSMUSG00000050747	Trim15	1810012B10Rik	tripartite motif-containing 15	protein-coding	0.035000	0.552239	
mm_156534.1	chrX	151047245	151047445	+	1	NA	NA	NA	175	NM_008001	14163	Mm.8142	NM_008001	ENSMUSG00000025265	Fgd1	ZFYVE3	FYVE, RhoGEF and PH domain containing 1	protein-coding	0.100000	0.721393	
mm_90633.1	chr10	128487917	128488117	+	1	NA	NA	NA	4992	NM_001317220	17904	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.035000	0.567164	
mm_71601.1	chr8	55059017	55059217	+	1	NA	NA	NA	104389	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.010000	0.348259	
mm_66419.1	chr7	44531293	44531493	-	1	NA	NA	NA	678	NM_019866	272382	Mm.8012	NM_019866	ENSMUSG00000008193	Spib	Spi-B	Spi-B transcription factor (Spi-1/PU.1 related)	protein-coding	0.015000	0.636816	
mm_55232.1	chr6	52240665	52240865	-	1	NA	NA	NA	89	NM_001122950	15395	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0.060000	0.542289	-34(CCCTATAAAAGC,+,0.00),-34(CCCTATAAAAGC,-,0.00)
mm_128969.1	chr15	74832113	74832313	-	1	NA	NA	NA	9430	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.010000	0.472637	
mm_73146.1	chr8	94985446	94985646	+	1	NA	NA	NA	1147	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.010000	0.547264	-62(GCCTCTAAGGGG,-,0.00),-61(CCTCTAAGGGGC,+,0.00)
mm_122762.1	chr14	54236013	54236213	-	1	NA	NA	NA	17816	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.442786	
mm_12462.1	chr2	71348426	71348626	+	1	NA	NA	NA	19028	NM_172436	78830	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.010000	0.373134	-10(TTTTTTAAAAGG,-,0.00),-9(TTTTTAAAAGGC,+,0.00)
mm_165439.1	chr2	154010448	154010648	+	1	NA	NA	NA	2272	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.010000	0.442786	
mm_166120.1	chr4	151848039	151848239	-	1	NA	NA	NA	13629	NM_001081557	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.005000	0.512438	28(CTTTTTCTAGGG,+,0.00)
mm_100076.1	chr11	115462621	115462821	+	1	NA	NA	NA	248	NM_001080934	217316	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	0.030000	0.606965	
mm_109779.1	chr12	119260833	119261033	+	1	NA	NA	NA	-22657	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.015000	0.398010	
mm_70971.1	chr8	27085488	27085688	+	1	NA	NA	NA	-253	NM_054044	78560	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	0.140000	0.756219	
mm_53504.1	chr6	135362913	135363113	+	1	NA	NA	NA	82	NM_001288628	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.015000	0.532338	-94(CTCCTTTAAAAC,-,0.00),-92(CCTTTAAAACAC,+,0.00)
mm_43857.1	chr5	143420903	143421103	+	1	NA	NA	NA	17183	NM_025841	66913	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	0.020000	0.452736	
mm_96779.1	chr11	69940287	69940487	+	1	NA	NA	NA	4059	NM_001347634	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.020000	0.567164	
mm_111175.1	chr12	83731360	83731560	-	1	NA	NA	NA	-32174	NM_001205343	170721	Mm.133443	NM_130887	ENSMUSG00000021223	Papln	E030033C16Rik	papilin, proteoglycan-like sulfated glycoprotein	protein-coding	0.010000	0.527363	
mm_18710.1	chr2	72156334	72156534	-	1	NA	NA	NA	101817	NM_001204166	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.010000	0.388060	-95(CCTTTTAAACCT,+,0.00),-52(AGCCCTAAAAGC,-,0.00)
mm_40360.1	chr5	48011046	48011246	+	1	NA	NA	NA	27991	NM_001291228	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding	0.000000	0.228856	
mm_146569.1	chr18	6515037	6515237	-	1	NA	NA	NA	971	NM_007935	13831	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1 (Drosophila)	protein-coding	0.010000	0.333333	
mm_139962.1	chr17	71653954	71654154	+	1	NA	NA	NA	12415	NR_028551	100217456		NR_028551	ENSMUSG00000092887	Snord53	MBII-35	small nucleolar RNA, C/D box 53	snoRNA	0.005000	0.363184	
mm_67168.1	chr7	73554885	73555085	-	1	NA	NA	NA	3410	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.005000	0.343284	
mm_20528.1	chr2	130906266	130906466	-	1	NA	NA	NA	30	NR_015523	613258	Mm.271990	NR_015523		A730017L22Rik	-	RIKEN cDNA A730017L22 gene	ncRNA	0.110000	0.686567	
mm_172226.1	chr6	67266880	67267080	+	1	NA	NA	NA	1	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.095000	0.671642	
mm_166791.1	chr6	145341367	145341567	+	1	NA	NA	NA	-46158	NR_003625	381827	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	0.065000	0.562189	
mm_3061.1	chr1	134099360	134099560	+	1	NA	NA	NA	-11782	NM_001284524	71884	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.035000	0.547264	
mm_13592.1	chr2	112506881	112507081	+	1	NA	NA	NA	14017	NM_028844	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.010000	0.467662	
mm_173327.1	chrY	90775710	90775910	-	1	NA	NA	NA	-9632	NR_137282	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.025000	0.676617	
mm_44236.1	chr5	5265626	5265826	-	1	NA	NA	NA	342	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.010000	0.412935	
mm_54650.1	chr6	38876424	38876624	-	1	NA	NA	NA	-334	NM_001294143	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.150000	0.761194	
mm_483.1	chr1	36761676	36761876	+	1	NA	NA	NA	-22	NM_009539	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.040000	0.532338	
mm_124106.1	chr14	79389319	79389519	-	1	NA	NA	NA	1249	NM_025832	66897	Mm.24425	NM_025832	ENSMUSG00000022020	Naa16	1300019C06Rik|Narg1l	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	protein-coding	0.000000	0.323383	
mm_169941.1	chr16	65000100	65000300	-	1	NA	NA	NA	105584	NM_008310	15557	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	0.035000	0.477612	
mm_101577.1	chr11	34360967	34361167	-	1	NA	NA	NA	46245	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.000000	0.442786	
mm_90186.1	chr10	120162115	120162315	+	1	NA	NA	NA	39322	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.015000	0.631841	
mm_133009.1	chr16	55975090	55975290	+	1	NA	NA	NA	-573	NR_027965	66391	Mm.472722	NM_133677	ENSMUSG00000102101	Zbtb11os1	2310061J03Rik	zinc finger and BTB domain containing 11, opposite strand 1	ncRNA	0.040000	0.427861	
mm_118783.1	chr14	24099487	24099687	+	1	NA	NA	NA	10710	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.015000	0.457711	
mm_151409.1	chr19	56548558	56548758	+	1	NA	NA	NA	397	NM_025811	66866	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.145000	0.761194	
mm_30855.1	chr4	28813031	28813231	+	1	NA	NA	NA	0	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.085000	0.636816	
mm_155646.1	chrX	85573929	85574129	+	1	NA	NA	NA	7	NM_025729	66724	Mm.119646	NM_025729	ENSMUSG00000035476	Tab3	4921526G09Rik|Map3k7ip3|mKIAA4135	TGF-beta activated kinase 1/MAP3K7 binding protein 3	protein-coding	0.130000	0.751244	
mm_161779.1	chr17	38305484	38305684	-	1	NA	NA	NA	-125	NM_146488	258481	Mm.377526	NM_146488	ENSMUSG00000054940	Olfr137	MOR256-18	olfactory receptor 137	protein-coding	0.005000	0.218905	
mm_160188.1	chr7	54835174	54835374	+	1	NA	NA	NA	29	NM_178705	233271	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	0.035000	0.537313	
mm_122630.1	chr14	51145713	51145913	-	1	NA	NA	NA	954	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.020000	0.547264	
mm_157796.1	chrX	73880736	73880936	-	1	NA	NA	NA	-2	NM_008478	16728	Mm.260568	NM_008478	ENSMUSG00000031391	L1cam	CD171|L1|N-CAM-L1|NCAM-L1	L1 cell adhesion molecule	protein-coding	0.105000	0.716418	
mm_89265.1	chr10	87859603	87859803	+	1	NA	NA	NA	651	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.035000	0.487562	-18(GTTTTAAGAGAC,+,0.00)
mm_89508.1	chr10	94133254	94133454	+	1	NA	NA	NA	-14577	NM_011629	22025	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	0.025000	0.482587	
mm_140303.1	chr17	85623902	85624102	+	1	NA	NA	NA	3168	NM_011381	20473	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0.020000	0.482587	
mm_115701.1	chr13	14318870	14319070	-	1	NA	NA	NA	204256	NM_001081348	94253	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.015000	0.497512	
mm_107258.1	chr12	28751733	28751933	+	1	NA	NA	NA	5	NM_201357	380752	Mm.273724	NM_201357	ENSMUSG00000036613	Tssc1	D12Ertd604e|Eipr1	tumor suppressing subtransferable candidate 1	protein-coding	0.060000	0.572139	
mm_170658.1	chr2	108334035	108334235	-	1	NA	NA	NA	944155	NM_029790	76894	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.030000	0.512438	
mm_51809.1	chr6	88820063	88820263	+	1	NA	NA	NA	21772	NM_030251	80283	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.005000	0.412935	
mm_94110.1	chr10	128589836	128590036	-	1	NA	NA	NA	-435	NM_010153	13867	Mm.373043	NM_010153	ENSMUSG00000018166	Erbb3	C76256|Erbb-3|Erbb3r|Her3	erb-b2 receptor tyrosine kinase 3	protein-coding	0.045000	0.577114	
mm_105388.1	chr11	103363534	103363734	-	1	NA	NA	NA	58	NM_183288	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.040000	0.616915	
mm_41186.1	chr5	88327731	88327931	+	1	NA	NA	NA	10519	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.000000	0.343284	-60(GGATTTAAAAGA,-,0.00)
mm_86055.1	chr9	114564192	114564392	-	1	NA	NA	NA	77	NM_001042503	636931	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	0.075000	0.572139	
mm_129179.1	chr15	76280875	76281075	-	1	NA	NA	NA	-11136	NR_045747	100038659	Mm.448549	NR_045747		Mirt2	ENSMUSG00000075583|Gm10872|Gm24562	myocardial infraction associated transcript 2	ncRNA	0.015000	0.472637	
mm_43415.1	chr5	135980006	135980206	+	1	NA	NA	NA	1	NM_011776	22788	Mm.1381	NM_011776	ENSMUSG00000004948	Zp3	Zp-3	zona pellucida glycoprotein 3	protein-coding	0.025000	0.557214	
mm_80245.1	chr9	72746342	72746542	+	1	NA	NA	NA	-60832	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.010000	0.502488	
mm_126695.1	chr15	85037011	85037211	+	1	NA	NA	NA	49	NM_133750	73225	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0.165000	0.761194	
mm_169557.1	chr15	103827145	103827345	+	1	NA	NA	NA	-71747	NR_126081	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.085000	0.601990	
mm_138450.1	chr17	35135700	35135900	+	1	NA	NA	NA	86	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.075000	0.616915	
mm_170866.1	chr2	18453579	18453779	+	1	NA	NA	NA	-60849	NM_007869	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.005000	0.507463	59(TCCTTTATAAGC,-,0.00),61(CTTTATAAGCGC,+,0.00)
mm_173155.1	chrX	35745797	35745997	-	1	NA	NA	NA	-142935	NM_001009947	75974	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	0.000000	0.477612	
mm_116947.1	chr13	56135390	56135590	-	1	NA	NA	NA	60	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.160000	0.766169	
mm_77585.1	chr8	123859307	123859507	-	1	NA	NA	NA	802	NM_028536	73420	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	0.165000	0.726368	
mm_57450.1	chr6	125131703	125131903	-	1	NA	NA	NA	-80	NM_138747	110109	Mm.29203	NM_138747	ENSMUSG00000038279	Nop2	120kDa|A530002O17|Nol1	NOP2 nucleolar protein	protein-coding	0.145000	0.676617	
mm_42891.1	chr5	122392172	122392372	+	1	NA	NA	NA	394	NM_019824	56378	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.015000	0.462687	
mm_112545.1	chr13	12156258	12156458	+	1	NA	NA	NA	30130	NR_045170	328186	Mm.188154	NM_183202		Gm10336	B330003H21|ENSMUSG00000071543	predicted gene 10336	ncRNA	0.030000	0.577114	
mm_122919.1	chr14	54960344	54960544	-	1	NA	NA	NA	6163	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.030000	0.532338	
mm_26440.1	chr3	142623720	142623920	+	1	NA	NA	NA	126	NR_105802	102465200		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.010000	0.532338	
mm_46007.1	chr5	90769960	90770160	-	1	NA	NA	NA	1542	NM_023785	57349	Mm.293614	NM_023785	ENSMUSG00000029372	Ppbp	2400003M24Rik|AI854500|CTAP3|CTAPIII|Cxcl7|LA-PF4|LDGF|MDGF|NAP-2|NAP-2-L1|Scyb7|TGB|TGB1|THBGB1|b-TG1|beta-TG	pro-platelet basic protein	protein-coding	0.000000	0.323383	
mm_154860.1	chrX	20658365	20658565	+	1	NA	NA	NA	-39	NM_001276317	22201	Mm.1104	NM_009457	ENSMUSG00000001924	Uba1	A1S9|Sbx|Ube-1|Ube1x	ubiquitin-like modifier activating enzyme 1	protein-coding	0.065000	0.616915	
mm_91193.1	chr10	21146334	21146534	-	1	NA	NA	NA	14550	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.005000	0.507463	
mm_18777.1	chr2	73529631	73529831	-	1	NA	NA	NA	-244	NM_153138	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.070000	0.631841	
mm_2280.1	chr1	91308538	91308738	+	1	NA	NA	NA	10300	NM_016717	50880	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	0.040000	0.542289	
mm_59277.1	chr7	24904298	24904498	+	1	NA	NA	NA	52	NM_001130152	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.085000	0.681592	
mm_38567.1	chr4	141723319	141723519	-	1	NA	NA	NA	0	NM_001017966	68817	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	0.165000	0.776119	
mm_5043.1	chr1	194619761	194619961	+	1	NA	NA	NA	32	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	0.105000	0.666667	
mm_143092.1	chr17	57080540	57080740	-	1	NA	NA	NA	-2130	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.010000	0.557214	
mm_82951.1	chr9	35569644	35569844	-	1	NA	NA	NA	325	NM_029762	76832	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	hydrolethalus syndrome 1	protein-coding	0.065000	0.631841	
mm_40185.1	chr5	36237662	36237862	+	1	NA	NA	NA	33741	NM_175249	76943	Mm.44242	NM_175249	ENSMUSG00000043430	Psapl1	2310020A21Rik	prosaposin-like 1	protein-coding	0.035000	0.557214	
mm_117587.1	chr13	89690633	89690833	-	1	NA	NA	NA	51779	NM_001081249	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.000000	0.412935	
mm_46626.1	chr5	108434291	108434491	-	1	NA	NA	NA	-13	NM_007507	11958	Mm.136093	NM_007507	ENSMUSG00000050856	Atp5k	2610008D24Rik|Atp5i|Lfm1	ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E	protein-coding	0.080000	0.597015	
mm_144442.1	chr18	22171333	22171533	+	1	NA	NA	NA	-37	NM_027616	70950	Mm.235716	NM_027616	ENSMUSG00000024306	Ccdc178	4921528I01Rik	coiled coil domain containing 178	protein-coding	0.020000	0.592040	
mm_52148.1	chr6	97980041	97980241	+	1	NA	NA	NA	-11642	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.373134	
mm_136323.1	chr16	92321297	92321497	-	1	NA	NA	NA	44	NM_029252	75328	Mm.72970	NM_029252	ENSMUSG00000051728	4930563D23Rik	-	RIKEN cDNA 4930563D23 gene	protein-coding	0.020000	0.512438	
mm_41553.1	chr5	92954956	92955156	+	1	NA	NA	NA	57063	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.005000	0.432836	
mm_35045.1	chr4	4529351	4529551	-	1	NA	NA	NA	7	NM_001277919	622019	Mm.246123	NM_001277919		Gm11780	OTTMUSG00000004194	predicted gene 11780	protein-coding	0.040000	0.492537	
mm_52015.1	chr6	94500264	94500464	+	1	NA	NA	NA	50	NM_026255	67582	Mm.280725	NM_026255	ENSMUSG00000045100	Slc25a26	4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	protein-coding	0.085000	0.592040	
mm_168876.1	chr12	40884186	40884386	-	1	NA	NA	NA	-139804	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.000000	0.378109	
mm_171719.1	chr4	84674985	84675185	-	1	NA	NA	NA	1	NM_172870	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.145000	0.781095	
mm_76326.1	chr8	84705173	84705373	-	1	NA	NA	NA	3816	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.040000	0.611940	
mm_93021.1	chr10	87860260	87860460	-	1	NA	NA	NA	-751	NM_001111274	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.025000	0.522388	
mm_66434.1	chr7	44753941	44754141	-	1	NA	NA	NA	5412	NM_133945	101568	Mm.28816	NM_133945	ENSMUSG00000002205	Vrk3	AI428238	vaccinia related kinase 3	protein-coding	0.010000	0.507463	
mm_125649.1	chr15	62730731	62730931	+	1	NA	NA	NA	-511380	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.010000	0.442786	
mm_19754.1	chr2	105016945	105017145	-	1	NA	NA	NA	-18	NM_145380	98221	Mm.379278	NM_145380	ENSMUSG00000027170	Eif3m	Ga17|Pcid1|Tango7	eukaryotic translation initiation factor 3, subunit M	protein-coding	0.105000	0.656716	
mm_166195.1	chr5	37154240	37154440	+	1	NA	NA	NA	69104	NM_001347348	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0.030000	0.487562	
mm_9798.1	chr1	181845188	181845388	-	1	NA	NA	NA	-2887	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.015000	0.487562	
mm_127389.1	chr15	101077801	101078001	+	1	NA	NA	NA	-23502	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.065000	0.706468	
mm_110132.1	chr12	26445054	26445254	-	1	NA	NA	NA	11298	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.010000	0.388060	
mm_76737.1	chr8	95143102	95143302	-	1	NA	NA	NA	-662	NM_001145831	16582	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.020000	0.547264	-24(AGCTTTTAAAGA,-,0.00),-23(GCTTTTAAAGAC,+,0.00)
mm_132360.1	chr16	34690454	34690654	+	1	NA	NA	NA	-62	NM_172824	239839	Mm.272045	NM_172824	ENSMUSG00000022833	Ccdc14	G630039H03Rik	coiled-coil domain containing 14	protein-coding	0.105000	0.721393	83(CCTTTTAGCGCC,+,0.00)
mm_28610.1	chr3	94783013	94783213	-	1	NA	NA	NA	3402	NM_001293727	70737	Mm.87634	NM_001037711	ENSMUSG00000068876	Cgn	6330408J11Rik	cingulin	protein-coding	0.020000	0.482587	
mm_165321.1	chr2	107793131	107793331	+	1	NA	NA	NA	502642	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding	0.000000	0.402985	
mm_130898.1	chr15	102399591	102399791	-	1	NA	NA	NA	-6625	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.040000	0.601990	
mm_54184.1	chr6	23839436	23839636	-	1	NA	NA	NA	-115	NM_001252105	320405	Mm.259632	NM_153163	ENSMUSG00000017978	Cadps2	A230044C21Rik|Caps-2|Caps2|Cpd2	Ca2+-dependent activator protein for secretion 2	protein-coding	0.185000	0.781095	
mm_132077.1	chr16	30093896	30094096	+	1	NA	NA	NA	28639	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hairy and enhancer of split 1 (Drosophila)	protein-coding	0.020000	0.547264	-34(CGGCATATAAGA,-,0.00)
mm_41571.1	chr5	93169858	93170058	+	1	NA	NA	NA	36537	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.020000	0.467662	
mm_169914.1	chr16	56116201	56116401	-	1	NA	NA	NA	40821	NM_001304503	66315	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0.015000	0.477612	
mm_143179.1	chr17	57247563	57247763	-	1	NA	NA	NA	26	NM_001308072	78308	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0.060000	0.577114	-23(CCTTATCAGGCG,+,0.00)
mm_2112.1	chr1	87853241	87853441	+	1	NA	NA	NA	54	NM_177646	227333	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0.145000	0.786070	
mm_105203.1	chr11	102097506	102097706	-	1	NA	NA	NA	3694	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.035000	0.587065	
mm_1451.1	chr1	67230519	67230719	+	1	NA	NA	NA	107592	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.353234	
mm_148782.1	chr19	6112831	6113031	+	1	NA	NA	NA	5655	NM_133678	66406	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.035000	0.577114	
mm_81356.1	chr9	108650040	108650240	+	1	NA	NA	NA	-760	NM_011790	23807	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.030000	0.447761	
mm_71706.1	chr8	61931490	61931690	+	1	NA	NA	NA	3503	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.010000	0.343284	
mm_64194.1	chr7	141464003	141464203	+	1	NA	NA	NA	3009	NM_001025103	213573	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.010000	0.557214	
mm_77715.1	chr8	126593859	126594059	-	1	NA	NA	NA	-523	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.150000	0.761194	
mm_88694.1	chr10	80142185	80142385	+	1	NA	NA	NA	10	NM_001347092	66043	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0.075000	0.587065	
mm_73984.1	chr8	120627372	120627572	+	1	NA	NA	NA	6910	NM_197988	68918	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0.025000	0.597015	
mm_60498.1	chr7	44478816	44479016	+	1	NA	NA	NA	-5601	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.398010	
mm_39688.1	chr5	26904369	26904569	+	1	NA	NA	NA	-309	NM_001198886	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.035000	0.601990	
mm_102591.1	chr11	61915101	61915301	-	1	NA	NA	NA	15056	NM_019921	56697	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0.015000	0.547264	
mm_55194.1	chr6	52191580	52191780	-	1	NA	NA	NA	23	NM_008265	15401	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	0.100000	0.577114	
mm_74829.1	chr8	23191088	23191288	-	1	NA	NA	NA	17265	NM_018743	102247	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	0.025000	0.522388	
mm_59735.1	chr7	28813185	28813385	+	1	NA	NA	NA	2395	NM_177301	15388	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.020000	0.537313	
mm_42048.1	chr5	108520191	108520391	+	1	NA	NA	NA	29736	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.030000	0.601990	
mm_25285.1	chr3	105704569	105704769	+	1	NA	NA	NA	70	NM_175398	109050	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0.085000	0.626866	
mm_125913.1	chr15	76032950	76033150	+	1	NA	NA	NA	-18714	NM_134087	105732	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	0.035000	0.606965	
mm_85123.1	chr9	95489711	95489911	-	1	NA	NA	NA	22185	NM_026476	67958	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0.025000	0.457711	24(GCCTTTTAATGC,-,0.00),26(CTTTTAATGCGC,+,0.00)
mm_93822.1	chr10	121476162	121476362	-	1	NA	NA	NA	-12	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.135000	0.805970	
mm_32396.1	chr4	106836803	106837003	+	1	NA	NA	NA	-31896	NM_001347159	329910	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0.015000	0.527363	-85(CTCTTAAGAGCC,+,0.00)
mm_2892.1	chr1	131910411	131910611	+	1	NA	NA	NA	53	NM_001145804	98415	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.075000	0.601990	
mm_60392.1	chr7	44474670	44474870	+	1	NA	NA	NA	4423	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.582090	
mm_57661.1	chr6	128487366	128487566	-	1	NA	NA	NA	39254	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.015000	0.427861	
mm_133092.1	chr16	62854254	62854454	+	1	NA	NA	NA	47	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0.110000	0.766169	
mm_60059.1	chr7	31161966	31162166	+	1	NA	NA	NA	-292	NR_046062	100038516	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322|ENSMUSG00000074193	predicted gene 10640	ncRNA	0.000000	0.547264	
mm_157630.1	chrX	56731774	56731974	-	1	NA	NA	NA	-83	NM_001077361	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.100000	0.666667	
mm_157485.1	chrX	48208603	48208803	-	1	NA	NA	NA	-1	NM_172465	208884	Mm.207367	NM_172465	ENSMUSG00000036985	Zdhhc9	6430508G22|9530098M12Rik	zinc finger, DHHC domain containing 9	protein-coding	0.075000	0.601990	
mm_122053.1	chr14	30206029	30206229	-	1	NA	NA	NA	147357	NM_001302637	12289	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.005000	0.427861	
mm_66398.1	chr7	44306828	44307028	-	1	NA	NA	NA	31	NM_009131	20256	Mm.20428	NM_009131	ENSMUSG00000004473	Clec11a	AW457320|Clecsf3|Scgf	C-type lectin domain family 11, member a	protein-coding	0.015000	0.557214	
mm_122303.1	chr14	34674557	34674757	-	1	NA	NA	NA	729	NM_001301330	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.085000	0.601990	
mm_105606.1	chr11	106782015	106782215	-	1	NA	NA	NA	644	NR_037224	100526469		NR_037224	ENSMUSG00000093273	Mir3064	mir-3064|mmu-mir-3064	microRNA 3064	ncRNA	0.000000	0.417910	
mm_147592.1	chr18	56572817	56573017	-	1	NA	NA	NA	22	NM_001127338	110695	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	0.125000	0.721393	
mm_114857.1	chr13	93304829	93305029	+	1	NA	NA	NA	1172	NM_011982	26556	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0.055000	0.507463	
mm_41314.1	chr5	90469500	90469700	+	1	NA	NA	NA	8730	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.020000	0.472637	77(CTTTCTATAAGG,-,0.00)
mm_109404.1	chr12	110444632	110444832	+	1	NA	NA	NA	-2447	NM_001135001	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.015000	0.522388	
mm_125153.1	chr15	30646946	30647146	+	1	NA	NA	NA	-392080	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.130000	0.731343	
mm_23342.1	chr3	54692969	54693169	+	1	NA	NA	NA	-36	NM_019995	56790	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0.095000	0.597015	
mm_3556.1	chr1	150423449	150423649	+	1	NA	NA	NA	-30494	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.020000	0.422886	
mm_114754.1	chr13	85126596	85126796	+	1	NA	NA	NA	-62689	NM_001347587	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0.010000	0.338308	
mm_74158.1	chr8	123397707	123397907	+	1	NA	NA	NA	-9275	NM_008559	17199	Mm.324942	NM_008559	ENSMUSG00000074037	Mc1r	Mcr1|Mshra|Tob|e	melanocortin 1 receptor	protein-coding	0.015000	0.577114	
mm_155375.1	chrX	71556789	71556989	+	1	NA	NA	NA	972	NM_001293625	15354	Mm.336087	NM_008253	ENSMUSG00000015217	Hmgb3	Hmg2a|Hmg4	high mobility group box 3	protein-coding	0.185000	0.825871	
mm_90731.1	chr10	5289317	5289517	-	1	NA	NA	NA	-94710	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.035000	0.606965	
mm_57286.1	chr6	124414958	124415158	-	1	NA	NA	NA	9	NM_008995	19305	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1R|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0.135000	0.766169	-50(GCCCCTTTAAGG,-,0.00),-49(CCCCTTTAAGGC,-,0.00),-48(CCCTTTAAGGCC,+,0.00),-47(CCTTTAAGGCCG,+,0.00)
mm_1901.1	chr1	85793364	85793564	+	1	NA	NA	NA	17	NM_133781	12283	Mm.26135	NM_133781	ENSMUSG00000036707	Cab39	AA408805|AA960512|C78372|MO25|MO25alpha	calcium binding protein 39	protein-coding	0.140000	0.741294	
mm_81873.1	chr9	119102397	119102597	+	1	NA	NA	NA	19	NM_177117	320256	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	0.055000	0.522388	
mm_99800.1	chr11	107548738	107548938	+	1	NA	NA	NA	878	NM_198298	78455	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	0.010000	0.412935	
mm_16067.1	chr2	168080796	168080996	+	1	NA	NA	NA	-108	NM_021409	58220	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0.195000	0.800995	
mm_28506.1	chr3	92534411	92534611	-	1	NA	NA	NA	-34018	NM_173070	229562	Mm.246590	NM_173070	ENSMUSG00000045566	Sprr4	-	small proline-rich protein 4	protein-coding	0.010000	0.502488	-34(ATCTATAAAAGG,-,0.00)
mm_61140.1	chr7	57419552	57419752	+	1	NA	NA	NA	32380	NR_033504	791383	Mm.403104	NR_033504	ENSMUSG00000055048	Gm9962	ENSMUSG00000055048	predicted gene 9962	ncRNA	0.005000	0.502488	
mm_50470.1	chr6	48987750	48987950	+	1	NA	NA	NA	989	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.010000	0.492537	
mm_114231.1	chr13	56609145	56609345	+	1	NA	NA	NA	-358	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.010000	0.542289	
mm_31794.1	chr4	63979782	63979982	+	1	NA	NA	NA	67133	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding	0.005000	0.492537	
mm_115426.1	chr13	117229257	117229457	+	1	NA	NA	NA	8784	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.070000	0.497512	
mm_171199.1	chr3	51415861	51416061	+	1	NA	NA	NA	-55	NM_053089	74838	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0.120000	0.686567	
mm_92723.1	chr10	80812474	80812674	-	1	NA	NA	NA	924	NM_028001	71912	Mm.45137	NM_028001	ENSMUSG00000020216	Jsrp1	2300003C06Rik|2310032K21Rik|JP-45|JP45	junctional sarcoplasmic reticulum protein 1	protein-coding	0.015000	0.552239	
mm_141121.1	chr17	26095356	26095556	-	1	NA	NA	NA	14	NM_019731	56520	Mm.41787	NM_019731	ENSMUSG00000024177	Nme4	2610027N22Rik|2810024O08Rik|5730493H09Rik|NM23-M4|Nm23M4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding	0.115000	0.736318	12(CCTTTTCGGGCG,+,0.00)
mm_36734.1	chr4	99122391	99122591	-	1	NA	NA	NA	-1576	NM_026082	67299	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0.000000	0.432836	
mm_1525.1	chr1	72828537	72828737	+	1	NA	NA	NA	3250	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.000000	0.462687	
mm_82830.1	chr9	31149841	31150041	-	1	NA	NA	NA	-18142	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.015000	0.467662	
mm_155186.1	chrX	56322883	56323083	+	1	NA	NA	NA	5375	NR_038168	72030	Mm.426148	NR_038168	ENSMUSG00000085114	1600025M17Rik	Gm394	RIKEN cDNA 1600025M17 gene	ncRNA	0.000000	0.472637	62(TGCTTGAAAAGG,-,0.00)
mm_112531.1	chr13	9349978	9350178	+	1	NA	NA	NA	73553	NM_001081426	208440	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.000000	0.393035	
mm_75675.1	chr8	67920905	67921105	-	1	NA	NA	NA	-10059	NM_030263	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.005000	0.412935	
mm_96675.1	chr11	69411305	69411505	+	1	NA	NA	NA	2270	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.060000	0.601990	66(GGGTATAAGAGG,-,0.00)
mm_91081.1	chr10	19012076	19012276	-	1	NA	NA	NA	-213	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.020000	0.477612	
mm_6545.1	chr1	75128511	75128711	-	1	NA	NA	NA	5279	NM_194333	22626	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.010000	0.507463	
mm_120377.1	chr14	64588016	64588216	+	1	NA	NA	NA	1	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA	0.025000	0.432836	
mm_92426.1	chr10	77088832	77089032	-	1	NA	NA	NA	24773	NM_001109991	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.015000	0.542289	
mm_23203.1	chr3	41539142	41539342	+	1	NA	NA	NA	-10768	NR_130791	78648	Mm.366093	NR_130791		2400006E01Rik	lncRNA-JADE	RIKEN cDNA 2400006E01 gene	ncRNA	0.010000	0.492537	
mm_65686.1	chr7	28367617	28367817	-	1	NA	NA	NA	4945	NM_138752	101497	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.045000	0.626866	
mm_29502.1	chr3	116114463	116114663	-	1	NA	NA	NA	15125	NM_011693	22329	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0.010000	0.442786	
mm_52134.1	chr6	97946744	97946944	+	1	NA	NA	NA	17027	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.015000	0.422886	
mm_9542.1	chr1	173912818	173913018	-	1	NA	NA	NA	128	NM_001301745	381308	Mm.490248	NM_001033450	ENSMUSG00000026536	Ifi211	A730048F03|Ifi205b|Mnda|ifi-205-B	interferon activated gene 211	protein-coding	0.005000	0.462687	
mm_169264.1	chr13	84222257	84222457	+	1	NA	NA	NA	61	NM_175187	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	0.070000	0.597015	
mm_114827.1	chr13	91930568	91930768	+	1	NA	NA	NA	-53783	NM_198415	76722	Mm.316438	NM_198415	ENSMUSG00000021622	Ckmt2	2300008A19Rik|ScCKmit	creatine kinase, mitochondrial 2	protein-coding	0.005000	0.422886	
mm_164299.1	chr15	103895949	103896149	-	1	NA	NA	NA	3251	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.010000	0.313433	
mm_14751.1	chr2	144593970	144594170	+	1	NA	NA	NA	5	NM_001033297	228715	Mm.27391	NM_001033297	ENSMUSG00000074754	Gm561	-	predicted gene 561	protein-coding	0.055000	0.562189	
mm_169280.1	chr13	94858397	94858597	+	1	NA	NA	NA	-17130	NM_011021	18420	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	0.020000	0.527363	-15(CCTTTTATGAGT,+,0.00)
mm_64373.1	chr7	142442299	142442499	+	1	NA	NA	NA	-69	NM_009405	21953	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	0.015000	0.557214	
mm_80480.1	chr9	78205923	78206123	+	1	NA	NA	NA	14057	NM_010357	14860	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	0.010000	0.398010	-56(CCATTTAAAACC,+,0.00)
mm_7112.1	chr1	89968195	89968395	-	1	NA	NA	NA	-37119	NM_010262	14472	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.145000	0.726368	
mm_39034.1	chr4	152305167	152305367	-	1	NA	NA	NA	8053	NM_133788	57295	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|OTTMUSG00000010406|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	0.005000	0.452736	
mm_53221.1	chr6	126939873	126940073	+	1	NA	NA	NA	7	NM_138594	28040	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	0.025000	0.477612	
mm_90883.1	chr10	9886616	9886816	-	1	NA	NA	NA	14324	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0.015000	0.402985	
mm_127289.1	chr15	100060152	100060352	+	1	NA	NA	NA	21588	NM_001159361	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.010000	0.402985	
mm_139721.1	chr17	57472470	57472670	+	1	NA	NA	NA	72744	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.010000	0.417910	
mm_96028.1	chr11	59549114	59549314	+	1	NA	NA	NA	6528	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.030000	0.477612	
mm_158024.1	chrX	96166714	96166914	-	1	NA	NA	NA	70769	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.015000	0.497512	
mm_125711.1	chr15	68928287	68928487	+	1	NA	NA	NA	-33	NM_010158	13992	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding	0.175000	0.810945	
mm_127072.1	chr15	97376595	97376795	+	1	NA	NA	NA	-129408	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.000000	0.457711	
mm_65295.1	chr7	24512336	24512536	-	1	NA	NA	NA	5349	NR_110958	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.040000	0.606965	
mm_85792.1	chr9	109832574	109832774	-	1	NA	NA	NA	-120	NM_018757	54369	Mm.12951	NM_018757	ENSMUSG00000032478	Nme6	nm23-M6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding	0.050000	0.517413	71(TTTTTTAAAGGC,+,0.00)
mm_95166.1	chr11	40692688	40692888	+	1	NA	NA	NA	-106	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.050000	0.502488	
mm_10828.1	chr2	24386251	24386451	+	1	NA	NA	NA	954	NM_177611	215632	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.005000	0.562189	
mm_53755.1	chr6	145387512	145387712	+	1	NA	NA	NA	-13	NR_003625	381827	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	0.010000	0.432836	
mm_53002.1	chr6	123270260	123270460	+	1	NA	NA	NA	8253	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.015000	0.442786	
mm_158933.1	chr1	72536292	72536492	-	1	NA	NA	NA	172	NM_001045533	381270	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	0.075000	0.701493	
mm_18500.1	chr2	62610474	62610674	-	1	NA	NA	NA	35681	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.010000	0.432836	
mm_172556.1	chr8	105593936	105594136	+	1	NA	NA	NA	-11193	NM_001081241	75687	Mm.41261	NM_001081241	ENSMUSG00000038604	Fam65a	2310066E14Rik|AI837433	family with sequence similarity 65, member A	protein-coding	0.030000	0.522388	
mm_124323.1	chr14	103815657	103815857	-	1	NA	NA	NA	27944	NM_007904	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.050000	0.537313	
mm_139374.1	chr17	51832720	51832920	+	1	NA	NA	NA	-173	NM_009122	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.160000	0.830846	
mm_148950.1	chr19	7268623	7268823	+	1	NA	NA	NA	444	NM_001320554	104383	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.120000	0.751244	
mm_21601.1	chr2	164238145	164238345	-	1	NA	NA	NA	96	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.467662	
mm_73125.1	chr8	94781074	94781274	+	1	NA	NA	NA	8994	NM_009142	20312	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	0.025000	0.537313	
mm_97974.1	chr11	83860522	83860722	+	1	NA	NA	NA	7662	NM_001291269	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.005000	0.497512	12(CCTCATAAAAGG,-,0.00)
mm_40639.1	chr5	64910128	64910328	+	1	NA	NA	NA	22471	NM_030682	21897	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.005000	0.477612	4(GCTTTACAAGCC,+,0.00)
mm_94043.1	chr10	128176379	128176579	-	1	NA	NA	NA	89	NM_019711	56516	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.010000	0.537313	
mm_36170.1	chr4	61855691	61855891	-	1	NA	NA	NA	-20611	NM_008649	17844	Mm.445286	NM_008649	ENSMUSG00000058523	Mup5	Mup18	major urinary protein 5	protein-coding	0.040000	0.492537	48(CGCCATTAAAGC,-,0.00)
mm_63838.1	chr7	135605680	135605880	+	1	NA	NA	NA	-48	NM_001316679	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.040000	0.527363	-32(CCATATAAACTC,+,0.00)
mm_149881.1	chr19	25300476	25300676	+	1	NA	NA	NA	63374	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.035000	0.537313	
mm_171370.1	chr4	119282199	119282399	-	1	NA	NA	NA	12214	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.070000	0.542289	
mm_28860.1	chr3	97227302	97227502	-	1	NA	NA	NA	-38	NM_029933	77578	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.120000	0.776119	
mm_49199.1	chr6	15207977	15208177	+	1	NA	NA	NA	22571	NM_001286607	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.000000	0.318408	
mm_51115.1	chr6	67759569	67759769	+	1	NA	NA	NA	-193970	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.000000	0.447761	
mm_157636.1	chrX	57182533	57182733	-	1	NA	NA	NA	-18004	NR_038463	100502842	Mm.164733	NR_038463	ENSMUSG00000085808	Gm14718	OTTMUSG00000017790	predicted gene 14718	ncRNA	0.005000	0.398010	
mm_72189.1	chr8	72491755	72491955	+	1	NA	NA	NA	759	NM_177766	270066	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	0.020000	0.582090	
mm_131204.1	chr16	8619704	8619904	+	1	NA	NA	NA	17897	NM_025708	66690	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	0.010000	0.482587	
mm_160292.1	chr7	128154263	128154463	+	1	NA	NA	NA	-19583	NM_001029872	381924	Mm.334257	NM_001029872	ENSMUSG00000070369	Itgad	Cd11d	integrin, alpha D	protein-coding	0.065000	0.572139	
mm_101097.1	chr11	11897605	11897805	-	1	NA	NA	NA	439	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.015000	0.477612	64(GTTTTAATAGAA,+,0.00)
mm_122687.1	chr14	52019956	52020156	-	1	NA	NA	NA	-343	NM_001253694	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.110000	0.731343	
mm_78360.1	chr9	25570528	25570728	+	1	NA	NA	NA	89031	NM_026189	67484	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.025000	0.482587	
mm_111465.1	chr12	98572268	98572468	-	1	NA	NA	NA	2344	NM_001316666	72258	Mm.196158	NM_029911	ENSMUSG00000033854	Kcnk10	1700024D23Rik|3010005K24Rik|Trek2	potassium channel, subfamily K, member 10	protein-coding	0.015000	0.502488	
mm_141283.1	chr17	27909135	27909335	-	1	NA	NA	NA	-71	NM_001286040	224650	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.145000	0.781095	
mm_40219.1	chr5	37241953	37242153	+	1	NA	NA	NA	-5	NM_001136058	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.140000	0.771144	
mm_115243.1	chr13	110394516	110394716	+	1	NA	NA	NA	-428	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.085000	0.711443	
mm_75878.1	chr8	70766563	70766763	-	1	NA	NA	NA	0	NM_023065	65972	Mm.30241	NM_023065	ENSMUSG00000031838	Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	0.025000	0.577114	
mm_96528.1	chr11	68502997	68503197	+	1	NA	NA	NA	78	NR_126154	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.005000	0.562189	
mm_96593.1	chr11	69090751	69090951	+	1	NA	NA	NA	2323	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.015000	0.422886	
mm_75528.1	chr8	57310288	57310488	-	1	NA	NA	NA	10471	NR_110474	102636514		NR_110474	ENSMUSG00000100510	Uph	-	upperhand	ncRNA	0.005000	0.412935	
mm_71124.1	chr8	36457987	36458187	+	1	NA	NA	NA	-31104	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding	0.105000	0.651741	
mm_116738.1	chr13	51756521	51756721	-	1	NA	NA	NA	37126	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.010000	0.557214	
mm_148353.1	chr18	84685543	84685743	-	1	NA	NA	NA	59	NM_023149	66054	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.100000	0.736318	
mm_89513.1	chr10	94162188	94162388	+	1	NA	NA	NA	14357	NM_011629	22025	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	0.025000	0.492537	
mm_52361.1	chr6	112489140	112489340	+	1	NA	NA	NA	568	NM_001081147	18430	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding	0.115000	0.666667	
mm_82980.1	chr9	35934266	35934466	-	1	NA	NA	NA	-84486	NR_030730	100041605	Mm.99350	NR_030730	ENSMUSG00000098705	Gm3428	-	predicted gene 3428	ncRNA	0.000000	0.293532	
mm_46227.1	chr5	99037077	99037277	-	1	NA	NA	NA	-98	NM_008926	19092	Mm.263002	NM_008926	ENSMUSG00000029334	Prkg2	AW212535|CGKII|Prkgr2|cGK-II	protein kinase, cGMP-dependent, type II	protein-coding	0.155000	0.805970	
mm_84084.1	chr9	58202257	58202457	-	1	NA	NA	NA	-13	NM_001161539	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.040000	0.587065	
mm_102901.1	chr11	69433010	69433210	-	1	NA	NA	NA	-19435	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.030000	0.537313	
mm_76632.1	chr8	92059593	92059793	-	1	NA	NA	NA	-258039	NM_008393	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.015000	0.482587	
mm_163396.1	chr12	69197081	69197281	+	1	NA	NA	NA	-30	NR_033222	414085	Mm.256223	NR_033222	ENSMUSG00000097061	9330151L19Rik	-	RIKEN cDNA 9330151L19 gene	ncRNA	0.140000	0.701493	
mm_11638.1	chr2	34871001	34871201	+	1	NA	NA	NA	-139	NM_080554	66998	Mm.270632	NM_080554	ENSMUSG00000026869	Psmd5	1500032A03Rik|AW475925|S5b|W91691|mKIAA0072	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	protein-coding	0.085000	0.631841	
mm_25557.1	chr3	116184574	116184774	+	1	NA	NA	NA	-54986	NM_011693	22329	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0.010000	0.417910	55(GACTTTAAAAGA,-,0.00)
mm_26380.1	chr3	142568332	142568532	+	1	NA	NA	NA	7936	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.000000	0.407960	
mm_122290.1	chr14	34552116	34552316	-	1	NA	NA	NA	-29415	NM_030062	78243	Mm.117483	NM_030062	ENSMUSG00000021797	9230112D13Rik	-	RIKEN cDNA 9230112D13 gene	protein-coding	0.035000	0.646766	
mm_128978.1	chr15	74833391	74833591	-	1	NA	NA	NA	8152	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.005000	0.398010	
mm_151639.1	chr19	4012644	4012844	-	1	NA	NA	NA	11	NM_133666	17995	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	0.095000	0.636816	
mm_75516.1	chr8	54718577	54718777	-	1	NA	NA	NA	1	NM_028220	244484	Mm.95281	NM_028220	ENSMUSG00000039375	Wdr17	3010002I12Rik|B230207L18Rik	WD repeat domain 17	protein-coding	0.010000	0.353234	-44(GCTTTTAAGAAC,+,0.00)
mm_88348.1	chr10	75841864	75842064	+	1	NA	NA	NA	-7083	NM_010361	14872	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.015000	0.417910	
mm_118568.1	chr14	18329939	18330139	+	1	NA	NA	NA	1805	NM_009455	22194	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	0.010000	0.437811	
mm_107188.1	chr12	25097334	25097534	+	1	NA	NA	NA	-1342	NM_010496	15902	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.050000	0.567164	
mm_158534.1	chrX	143923328	143923528	-	1	NA	NA	NA	9696	NM_001110222	13193	Mm.12871	NM_010025	ENSMUSG00000031285	Dcx	Dbct	doublecortin	protein-coding	0.005000	0.388060	28(TTCTTTAAAAAG,-,0.00)
mm_2552.1	chr1	108373008	108373208	+	1	NA	NA	NA	455849	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	0.000000	0.398010	
mm_72402.1	chr8	81770016	81770216	+	1	NA	NA	NA	427554	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.000000	0.412935	
mm_170083.1	chr17	35400583	35400783	+	1	NA	NA	NA	6584	NR_051981	15016	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	0.040000	0.572139	
mm_82017.1	chr9	121720468	121720668	+	1	NA	NA	NA	1387	NM_010918	18087	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0.015000	0.338308	
mm_135683.1	chr16	52424345	52424545	-	1	NA	NA	NA	28636	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.388060	-77(TTGTCTTAAAGG,-,0.00)
mm_152432.1	chr19	10685092	10685292	-	1	NA	NA	NA	399	NR_131163	72305	Mm.383489	NR_131163		2210404E10Rik	-	RIKEN cDNA 2210404E10 gene	ncRNA	0.020000	0.597015	
mm_157981.1	chrX	94123286	94123486	-	1	NA	NA	NA	21	NM_011768	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	0.150000	0.796020	
mm_55702.1	chr6	72900073	72900273	-	1	NA	NA	NA	-194	NM_019715	74287	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0.185000	0.825871	
mm_6494.1	chr1	74236566	74236766	-	1	NA	NA	NA	116	NM_029711	76709	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.105000	0.761194	
mm_168095.1	chr10	128704968	128705168	-	1	NA	NA	NA	-17	NM_016756	12566	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	0.105000	0.696517	
mm_168392.1	chr11	27233815	27234015	+	1	NA	NA	NA	448807	NR_002890	654472	Mm.347777	NR_002890		Gm12070	OTTMUSG00000005300	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.000000	0.393035	
mm_167303.1	chr8	57511783	57511983	+	1	NA	NA	NA	40	NM_008252	97165	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.070000	0.606965	
mm_160978.1	chr11	102317146	102317346	-	1	NA	NA	NA	41	NM_001044383	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.150000	0.810945	
mm_109419.1	chr12	110497520	110497720	+	1	NA	NA	NA	11881	NM_012023	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.025000	0.562189	
mm_162609.1	chr1	183296951	183297151	+	1	NA	NA	NA	-9	NM_181732	108909	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	0.115000	0.691542	
mm_113756.1	chr13	44733952	44734152	+	1	NA	NA	NA	2781	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.065000	0.641791	
mm_112826.1	chr13	20805086	20805286	+	1	NA	NA	NA	11073	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.432836	
mm_52465.1	chr6	113697307	113697507	+	1	NA	NA	NA	357	NM_001033463	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.190000	0.791045	
mm_15583.1	chr2	158762028	158762228	+	1	NA	NA	NA	-5971	NM_027975	71878	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	0.005000	0.522388	
mm_139723.1	chr17	57476205	57476405	+	1	NA	NA	NA	69009	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.005000	0.393035	
mm_23002.1	chr3	34056968	34057168	+	1	NA	NA	NA	24286	NM_001286972	67713	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.000000	0.338308	
mm_109087.1	chr12	104413967	104414167	+	1	NA	NA	NA	7359	NM_009252	20716	Mm.482074	NM_009252	ENSMUSG00000021091	Serpina3n	Spi2-2|Spi2.2|Spi2/eb.4	serine (or cysteine) peptidase inhibitor, clade A, member 3N	protein-coding	0.005000	0.552239	
mm_89581.1	chr10	95730236	95730436	+	1	NA	NA	NA	-166169	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.020000	0.487562	
mm_158203.1	chrX	105391676	105391876	-	1	NA	NA	NA	-22	NR_015552	100043213	Mm.388967	NR_015552	ENSMUSG00000087620	5330434G04Rik	-	RIKEN cDNA 5330434G04 gene	ncRNA	0.010000	0.487562	
mm_55364.1	chr6	57535335	57535535	-	1	NA	NA	NA	-9	NM_175523	243382	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.020000	0.437811	
mm_77838.1	chr9	5298674	5298874	+	1	NA	NA	NA	257	NM_009807	12362	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.020000	0.398010	
mm_138334.1	chr17	34896868	34897068	+	1	NA	NA	NA	-1524	NM_001286575	110147	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0.015000	0.537313	
mm_115671.1	chr13	12526913	12527113	-	1	NA	NA	NA	-6563	NM_133643	171211	Mm.159671	NM_133643	ENSMUSG00000095105	Edaradd	1810032E07Rik|5830469M23Rik|A630043P06|cr	EDAR (ectodysplasin-A receptor)-associated death domain	protein-coding	0.005000	0.447761	
mm_69553.1	chr7	135697967	135698167	-	1	NA	NA	NA	18312	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.492537	
mm_2788.1	chr1	130848963	130849163	+	1	NA	NA	NA	-16714	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.015000	0.582090	
mm_111337.1	chr12	86883890	86884090	-	1	NA	NA	NA	824	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.075000	0.696517	
mm_102228.1	chr11	54910036	54910236	-	1	NA	NA	NA	7282	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.030000	0.631841	
mm_111071.1	chr12	80132176	80132376	-	1	NA	NA	NA	568	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.030000	0.532338	
mm_145416.1	chr18	58408824	58409024	+	1	NA	NA	NA	-147316	NM_001081072	225579	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0.020000	0.447761	
mm_52622.1	chr6	117173966	117174166	+	1	NA	NA	NA	5531	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.035000	0.577114	
mm_134958.1	chr16	31311235	31311435	-	1	NA	NA	NA	3473	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.020000	0.547264	
mm_95825.1	chr11	55405152	55405352	+	1	NA	NA	NA	14828	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.010000	0.572139	
mm_1134.1	chr1	60490111	60490311	+	1	NA	NA	NA	76554	NM_001045513	77300	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0.020000	0.577114	
mm_130345.1	chr15	97731539	97731739	-	1	NA	NA	NA	-234	NM_001168693	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.005000	0.457711	
mm_89825.1	chr10	105840998	105841198	+	1	NA	NA	NA	282	NM_207522	216292	Mm.250875	NM_207522	ENSMUSG00000036009	Mettl25	-	methyltransferase like 25	protein-coding	0.115000	0.741294	
mm_10477.1	chr2	14603743	14603943	+	1	NA	NA	NA	-463	NM_023116	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.015000	0.462687	
mm_43987.1	chr5	146455464	146455664	+	1	NA	NA	NA	-26379	NM_001243104	623198	Mm.489582	NM_001243104	ENSMUSG00000096344	Gm6408	-	predicted gene 6408	protein-coding	0.020000	0.462687	
mm_133091.1	chr16	62854240	62854440	+	1	NA	NA	NA	33	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0.100000	0.776119	
mm_92797.1	chr10	81350328	81350528	-	1	NA	NA	NA	-1	NM_010440	15353	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0.110000	0.656716	
mm_50865.1	chr6	55376218	55376418	+	1	NA	NA	NA	23	NM_001003685	14602	Mm.89928	NM_001003685	ENSMUSG00000004654	Ghrhr	Ghrfr|lit|little	growth hormone releasing hormone receptor	protein-coding	0.020000	0.582090	
mm_138223.1	chr17	34329959	34330159	+	1	NA	NA	NA	4384	NM_001033978	381091	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	0.010000	0.517413	
mm_111009.1	chr12	78980513	78980713	-	1	NA	NA	NA	2865	NM_001170401	268567	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.015000	0.567164	
mm_94826.1	chr11	23306350	23306550	+	1	NA	NA	NA	-445	NM_001190401	17847	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.130000	0.761194	
mm_26568.1	chr3	146598886	146599086	+	1	NA	NA	NA	1837	NM_009474	22262	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.015000	0.467662	
mm_134177.1	chr16	10960360	10960560	-	1	NA	NA	NA	32661	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.005000	0.417910	-95(CCTTAAAGACTG,+,0.00)
mm_111667.1	chr12	103336827	103337027	-	1	NA	NA	NA	19074	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.015000	0.542289	
mm_44266.1	chr5	5663179	5663379	-	1	NA	NA	NA	953	NM_172447	207686	Mm.319007	NM_172447	ENSMUSG00000040473	Cfap69	4921525K03|A330021E22Rik|AI427898	cilia and flagella associated protein 69	protein-coding	0.015000	0.542289	
mm_152751.1	chr19	20010044	20010244	-	1	NA	NA	NA	380527	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.025000	0.427861	58(TGCTCTATAAAG,-,0.00)
mm_69675.1	chr7	139984698	139984898	-	1	NA	NA	NA	2076	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.035000	0.537313	
mm_106932.1	chr12	8572059	8572259	+	1	NA	NA	NA	26907	NM_177802	328059	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	0.020000	0.487562	
mm_42196.1	chr5	112286032	112286232	+	1	NA	NA	NA	9441	NM_009419	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.010000	0.407960	
mm_142414.1	chr17	45549603	45549803	-	1	NA	NA	NA	-26	NM_001013749	210573	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0.090000	0.746269	
mm_37639.1	chr4	127971619	127971819	-	1	NA	NA	NA	-878	NM_001134733	635169	Mm.346755	NM_001134733	ENSMUSG00000028813	CK137956	-	cDNA sequence CK137956	protein-coding	0.090000	0.666667	
mm_165662.1	chr3	87971048	87971248	+	1	NA	NA	NA	55	NM_016701	18008	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46	nestin	protein-coding	0.060000	0.597015	-23(CCCCCTTAAAAG,-,0.00),-22(CCCCTTAAAAGC,-,0.00),-21(CCCTTAAAAGCT,+,0.00),-20(CCTTAAAAGCTC,+,0.00)
mm_98244.1	chr11	88201330	88201530	+	1	NA	NA	NA	-2958	NM_024174	64656	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	0.000000	0.437811	
mm_144002.1	chr17	88065701	88065901	-	1	NA	NA	NA	-516	NM_001081034	225055	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.095000	0.671642	
mm_131983.1	chr16	25040166	25040366	+	1	NA	NA	NA	-19373	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.015000	0.517413	
mm_103454.1	chr11	76262997	76263197	-	1	NA	NA	NA	19361	NM_183263	67390	Mm.24886	NM_183263	ENSMUSG00000038046	Rnmtl1	4833420N02Rik|AI255153|HC90|Mrm3	RNA methyltransferase like 1	protein-coding	0.060000	0.631841	
mm_108599.1	chr12	85455486	85455686	+	1	NA	NA	NA	-18315	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.055000	0.577114	
mm_23372.1	chr3	55467095	55467295	+	1	NA	NA	NA	5437	NM_001195540	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.000000	0.308458	
mm_81152.1	chr9	107278752	107278952	+	1	NA	NA	NA	10544	NM_001316691	102626	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0.010000	0.572139	
mm_67876.1	chr7	99183750	99183950	-	1	NA	NA	NA	-1137	NM_026384	67800	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	0.015000	0.472637	
mm_100228.1	chr11	117156276	117156476	+	1	NA	NA	NA	41204	NM_001166506	74136	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.015000	0.582090	
mm_103115.1	chr11	69997151	69997351	-	1	NA	NA	NA	-211	NM_001291127	78246	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.100000	0.766169	
mm_25177.1	chr3	103262964	103263164	+	1	NA	NA	NA	-16229	NM_053170	94093	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.010000	0.452736	-33(GAATATAAATGG,-,0.00)
mm_30133.1	chr3	142149994	142150194	-	1	NA	NA	NA	19134	NM_001277217	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.000000	0.303483	
mm_116098.1	chr13	28835992	28836192	-	1	NA	NA	NA	49330	NR_045054	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.005000	0.447761	
mm_169303.1	chr14	103371420	103371620	-	1	NA	NA	NA	-24720	NM_207215	105689	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.020000	0.517413	
mm_115261.1	chr13	110538333	110538533	+	1	NA	NA	NA	143389	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.010000	0.477612	
mm_76984.1	chr8	106935489	106935689	-	1	NA	NA	NA	-161	NM_009229	20650	Mm.30228	NM_009229	ENSMUSG00000041308	Sntb2	Snt2	syntrophin, basic 2	protein-coding	0.090000	0.636816	
mm_64211.1	chr7	141476297	141476497	+	1	NA	NA	NA	17	NM_001252588	64540	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.020000	0.651741	
mm_29097.1	chr3	104794358	104794558	-	1	NA	NA	NA	5424	NM_007484	11853	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0.005000	0.517413	
mm_83864.1	chr9	54802919	54803119	-	1	NA	NA	NA	38271	NM_013496	12903	Mm.34797	NM_013496	ENSMUSG00000032291	Crabp1	AI326249|CRABP-I|Crabp-1|CrabpI|Rbp-5	cellular retinoic acid binding protein I	protein-coding	0.005000	0.527363	
mm_116829.1	chr13	54611434	54611634	-	1	NA	NA	NA	-161	NM_001347512	74325	Mm.290026	NM_028870	ENSMUSG00000047547	Cltb	2310046E19Rik|lcb	clathrin, light polypeptide (Lcb)	protein-coding	0.060000	0.616915	
mm_118263.1	chr13	112463841	112464041	-	1	NA	NA	NA	-129	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.115000	0.671642	
mm_166083.1	chr4	138262392	138262592	+	1	NA	NA	NA	241	NM_010623	16559	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding	0.125000	0.776119	
mm_154623.1	chrX	7728337	7728537	+	1	NA	NA	NA	-134	NM_138602	54637	Mm.28850	NM_138602	ENSMUSG00000031149	Praf2	AA986329|C78013|DXImx39e|JM4|Sfc20	PRA1 domain family 2	protein-coding	0.060000	0.567164	
mm_65816.1	chr7	29155507	29155707	-	1	NA	NA	NA	603	NM_001146023	73833	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	0.075000	0.646766	
mm_101554.1	chr11	33843478	33843678	-	1	NA	NA	NA	7	NM_027398	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.135000	0.766169	
mm_131152.1	chr16	6824670	6824870	+	1	NA	NA	NA	-245065	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.005000	0.363184	-13(ATGTCTAAAAGG,-,0.00)
mm_21471.1	chr2	160982651	160982851	-	1	NA	NA	NA	-70412	NM_182840	280635	Mm.330747	NM_182840	ENSMUSG00000050700	Emilin3	1110013O17Rik|EMILIN-3|EMILIN-5|EMILIN-T|Emilin5	elastin microfibril interfacer 3	protein-coding	0.010000	0.437811	-98(CTTTTTATAACC,+,0.00)
mm_8082.1	chr1	135603120	135603320	-	1	NA	NA	NA	-17865	NM_173437	215690	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.025000	0.606965	
mm_84128.1	chr9	58979042	58979242	-	1	NA	NA	NA	57299	NM_008684	18007	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0.050000	0.452736	
mm_108295.1	chr12	79208814	79209014	+	1	NA	NA	NA	1	NM_030017	77974	Mm.274373	NM_030017	ENSMUSG00000021123	Rdh12	-	retinol dehydrogenase 12	protein-coding	0.015000	0.542289	
mm_119818.1	chr14	54225955	54226155	+	1	NA	NA	NA	27874	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.025000	0.522388	
mm_54110.1	chr6	17171473	17171673	-	1	NA	NA	NA	-26178	NR_102305	319682	Mm.136046	NR_102304	ENSMUSG00000085171	D830026I12Rik	-	RIKEN cDNA D830026I12 gene	ncRNA	0.030000	0.487562	
mm_50613.1	chr6	49823522	49823722	+	1	NA	NA	NA	912	NM_023456	109648	Mm.154796	NM_023456	ENSMUSG00000029819	Npy	0710005A05Rik	neuropeptide Y	protein-coding	0.045000	0.557214	
mm_65118.1	chr7	19399784	19399984	-	1	NA	NA	NA	37	NM_001286038	232943	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	0.045000	0.686567	
mm_118429.1	chr14	8002818	8003018	+	1	NA	NA	NA	30	NM_001331065	66082	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	0.095000	0.651741	-62(GCGCCTTTAAGG,-,0.00),-60(GCCTTTAAGGAG,+,0.00)
mm_114567.1	chr13	74639749	74639949	+	1	NA	NA	NA	-23	NM_030711	80898	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0.060000	0.636816	
mm_128245.1	chr15	36608871	36609071	-	1	NA	NA	NA	2	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.100000	0.587065	
mm_27903.1	chr3	79483096	79483296	-	1	NA	NA	NA	84483	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.000000	0.427861	
mm_26101.1	chr3	136955179	136955379	+	1	NA	NA	NA	285213	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.000000	0.507463	-36(CACTATAAAAGG,-,0.00)
mm_35650.1	chr4	43533149	43533349	-	1	NA	NA	NA	-9695	NM_001277875	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.020000	0.562189	
mm_23185.1	chr3	40949851	40950051	+	1	NA	NA	NA	-680	NM_001040399	214048	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0.205000	0.815920	
mm_36859.1	chr4	106859509	106859709	-	1	NA	NA	NA	-51861	NM_198438	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.000000	0.557214	56(GGGCTTTAAGGG,-,0.00),58(GCTTTAAGGGTC,+,0.00)
mm_12530.1	chr2	72205546	72205746	+	1	NA	NA	NA	-79991	NM_023057	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.020000	0.318408	
mm_29466.1	chr3	113577650	113577850	-	1	NA	NA	NA	0	NM_001110505	11722	Mm.439727	NM_007446	ENSMUSG00000074264	Amy1	Amy-1|Amy1a|C030014B17Rik	amylase 1, salivary	protein-coding	0.005000	0.368159	
mm_100101.1	chr11	115765343	115765543	+	1	NA	NA	NA	10	NM_028014	71947	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	0.075000	0.636816	
mm_162011.1	chr19	44192319	44192519	-	1	NA	NA	NA	23	NM_181422	329064	Mm.308481	NM_181422	ENSMUSG00000037578	Pkd2l1	B830002B15|BC046386|PCL|PKD2L|Pkdl|TRPP3	polycystic kidney disease 2-like 1	protein-coding	0.005000	0.532338	
mm_21737.1	chr2	164777879	164778079	-	1	NA	NA	NA	1755	NM_009394	21925	Mm.1716	NM_009394	ENSMUSG00000017300	Tnnc2	Tncs	troponin C2, fast	protein-coding	0.035000	0.592040	
mm_93008.1	chr10	87057842	87058042	-	1	NA	NA	NA	-104	NM_029685	76640	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding	0.035000	0.577114	79(CAGCTTAAAAAG,-,0.00),81(GCTTAAAAAGAT,+,0.00)
mm_68788.1	chr7	123329382	123329582	-	1	NA	NA	NA	40433	NM_001122643	70497	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.000000	0.318408	-18(TTTTTTAAAAGG,-,0.00),-17(TTTTTAAAAGGC,+,0.00)
mm_28167.1	chr3	87849016	87849216	-	1	NA	NA	NA	2361	NM_021309	27371	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	0.040000	0.611940	
mm_3579.1	chr1	151132873	151133073	+	1	NA	NA	NA	-5061	NR_038011	402734	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.015000	0.447761	
mm_57139.1	chr6	122609872	122610072	-	1	NA	NA	NA	115	NM_008108	14562	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0.030000	0.562189	
mm_149061.1	chr19	8839470	8839670	+	1	NA	NA	NA	242	NM_008144	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.020000	0.527363	
mm_35076.1	chr4	6990526	6990726	-	1	NA	NA	NA	97	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.020000	0.378109	
mm_58185.1	chr6	142964286	142964486	-	1	NA	NA	NA	66	NM_011374	20449	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0.105000	0.711443	
mm_12513.1	chr2	72054519	72054719	+	1	NA	NA	NA	2	NM_001204166	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.015000	0.497512	-16(TCTTTTAGACCA,+,0.00)
mm_65078.1	chr7	19149131	19149331	-	1	NA	NA	NA	-35	NM_026111	67369	Mm.234876	NM_026111	ENSMUSG00000030407	Qpctl	1810019P04Rik|BB101812|gQC	glutaminyl-peptide cyclotransferase-like	protein-coding	0.080000	0.582090	
mm_47933.1	chr5	135078230	135078430	-	1	NA	NA	NA	-64	NM_001199677	194309	Mm.44356	NM_177574	ENSMUSG00000043614	Vps37d	Wbscr24	vacuolar protein sorting 37D	protein-coding	0.130000	0.786070	-47(GCCCCTTTAAGA,-,0.00),-45(CCCTTTAAGAGC,+,0.00),-45(CCCTTTAAGAGC,-,0.00),-44(CCTTTAAGAGCG,+,0.00)
mm_85201.1	chr9	96737508	96737708	-	1	NA	NA	NA	-5933	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.015000	0.358209	
mm_126437.1	chr15	80623381	80623581	+	1	NA	NA	NA	-2	NM_010815	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.010000	0.572139	
mm_145389.1	chr18	57133385	57133585	+	1	NA	NA	NA	395	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.060000	0.626866	
mm_33809.1	chr4	135152625	135152825	+	1	NA	NA	NA	32080	NM_019732	12399	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.165000	0.820896	
mm_17938.1	chr2	36049217	36049417	-	1	NA	NA	NA	-25	NM_026703	68375	Mm.19834	NM_026703	ENSMUSG00000026895	Ndufa8	0610033L03Rik|AW261656	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 8	protein-coding	0.095000	0.661692	
mm_130050.1	chr15	89149504	89149704	-	1	NA	NA	NA	2	NM_011161	19094	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	0.130000	0.781095	
mm_159030.1	chr1	174448733	174448933	+	1	NA	NA	NA	208	NM_207694	546747	Mm.380253	NM_207694	ENSMUSG00000066671	Olfr220	EG546747|MOR103-13P|MOR103-17|Olfr220-ps1|Olfr413-ps1	olfactory receptor 220	protein-coding	0.005000	0.492537	
mm_57110.1	chr6	122594146	122594346	-	1	NA	NA	NA	8198	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.010000	0.393035	-42(ACCTTTAAAAAG,-,0.00),-41(CCTTTAAAAAGA,+,0.00),-40(CTTTAAAAAGAG,+,0.00)
mm_103080.1	chr11	69900813	69901013	-	1	NA	NA	NA	73	NM_001316696	70419	Mm.272859	NM_027419	ENSMUSG00000018570	2810408A11Rik	1700019L01Rik|4930470J18Rik	RIKEN cDNA 2810408A11 gene	protein-coding	0.060000	0.616915	
mm_159719.1	chr5	33843220	33843420	+	1	NA	NA	NA	208	NM_001177884	107823	Mm.19892	NM_175231	ENSMUSG00000057406	Whsc1	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|NSD2|Whsc1l|mKIAA1090	Wolf-Hirschhorn syndrome candidate 1 (human)	protein-coding	0.005000	0.437811	
mm_98681.1	chr11	96286546	96286746	+	1	NA	NA	NA	0	NM_010460	15415	Mm.390366	NM_010460	ENSMUSG00000038721	Hoxb7	AI325018|Hox-2.3	homeobox B7	protein-coding	0.055000	0.477612	
mm_109190.1	chr12	108554612	108554812	+	1	NA	NA	NA	-8	NM_001163394	14026	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.140000	0.751244	-35(CCCTCTTAGAGG,-,0.00),-34(CCTCTTAGAGGC,+,0.00)
mm_102455.1	chr11	59836832	59837032	-	1	NA	NA	NA	2835	NM_011991	26572	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	0.005000	0.427861	
mm_21110.1	chr2	153444298	153444498	-	1	NA	NA	NA	81	NM_001001986	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.110000	0.756219	
mm_73881.1	chr8	119344624	119344824	+	1	NA	NA	NA	186	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.100000	0.751244	-92(CCTCATATGGGC,+,0.00)
mm_169269.1	chr13	86046653	86046853	-	1	NA	NA	NA	42	NM_007749	12867	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	0.075000	0.572139	
mm_85308.1	chr9	101034762	101034962	-	1	NA	NA	NA	22	NM_001311149	66904	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0.115000	0.592040	
mm_28486.1	chr3	92457402	92457602	-	1	NA	NA	NA	1218	NM_001204427	20766	Mm.57092	NM_011478	ENSMUSG00000045539	Sprr3	SPR3	small proline-rich protein 3	protein-coding	0.000000	0.447761	
mm_63181.1	chr7	125491021	125491221	+	1	NA	NA	NA	421	NM_026330	67711	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.030000	0.582090	
mm_170584.1	chr19	5798781	5798981	-	1	NA	NA	NA	-2900	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.030000	0.472637	
mm_11485.1	chr2	32396138	32396338	+	1	NA	NA	NA	348	NM_133783	96979	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	0.090000	0.641791	-44(GTCCCTTTAAGG,-,0.00),-42(CCCTTTAAGGAA,+,0.00)
mm_144469.1	chr18	23796740	23796940	+	1	NA	NA	NA	-7130	NM_153058	212307	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.010000	0.452736	
mm_1121.1	chr1	59959093	59959293	+	1	NA	NA	NA	46187	NM_001037725	72750	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0.000000	0.338308	
mm_91579.1	chr10	40134030	40134230	-	1	NA	NA	NA	8124	NM_028247	72472	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.005000	0.338308	81(GCATTTTAAAGC,-,0.00)
mm_44353.1	chr5	17795479	17795679	-	1	NA	NA	NA	40317	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.010000	0.328358	
mm_80519.1	chr9	80066928	80067128	+	1	NA	NA	NA	125	NM_146003	215351	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.145000	0.756219	
mm_28899.1	chr3	98069245	98069445	-	1	NA	NA	NA	55807	NM_010928	18129	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.010000	0.547264	
mm_96299.1	chr11	63146544	63146744	+	1	NA	NA	NA	13841	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.020000	0.437811	
mm_3650.1	chr1	153085520	153085720	+	1	NA	NA	NA	100827	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.015000	0.497512	
mm_129299.1	chr15	77306866	77307066	-	1	NA	NA	NA	87	NM_001110827	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.080000	0.686567	
mm_1948.1	chr1	86350556	86350756	+	1	NA	NA	NA	629	NR_028478	100303740	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	0.015000	0.447761	88(TCCCATTTAAGG,-,0.00)
mm_28038.1	chr3	83836761	83836961	-	1	NA	NA	NA	4747	NM_011905	24088	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.020000	0.557214	89(CGCCCTTTAAGC,-,0.00)
mm_50690.1	chr6	51588986	51589186	+	1	NA	NA	NA	44563	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.010000	0.417910	
mm_118065.1	chr13	102905709	102905909	-	1	NA	NA	NA	145554	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.025000	0.407960	
mm_156150.1	chrX	129891547	129891747	+	1	NA	NA	NA	141905	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.000000	0.363184	37(GCATATATAAGA,-,0.00)
mm_144364.1	chr18	20435928	20436128	+	1	NA	NA	NA	-147	NM_181564	16769	Mm.358619	NM_181564	ENSMUSG00000001804	Dsg4	CDHF13|lah	desmoglein 4	protein-coding	0.005000	0.422886	
mm_115641.1	chr13	12273989	12274189	-	1	NA	NA	NA	-15976	NM_001081128	238505	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.015000	0.517413	
mm_165584.1	chr3	31126425	31126625	+	1	NA	NA	NA	-23395	NM_008770	18417	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.015000	0.507463	60(GTCTTTAAAGGC,+,0.00),60(GTCTTTAAAGGC,-,0.00),61(TCTTTAAAGGCA,+,0.00)
mm_162931.1	chr10	123264888	123265088	+	1	NA	NA	NA	912	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	0.100000	0.636816	
mm_129668.1	chr15	81327215	81327415	-	1	NA	NA	NA	33450	NM_011399	20524	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	0.015000	0.462687	
mm_76623.1	chr8	91801282	91801482	-	1	NA	NA	NA	272	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.155000	0.746269	
mm_8062.1	chr1	135375184	135375384	-	1	NA	NA	NA	-221	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.015000	0.597015	
mm_75561.1	chr8	58700914	58701114	-	1	NA	NA	NA	-218	NM_001177534	100271928	Mm.484123	NM_001177534		Gm15881	OTTMUSG00000027193	predicted gene 15881	protein-coding	0.025000	0.358209	84(CACTTTAAAAAG,-,0.00),86(CTTTAAAAAGCC,+,0.00)
mm_75370.1	chr8	45306984	45307184	-	1	NA	NA	NA	-12249	NM_008455	16621	Mm.482691	NM_008455	ENSMUSG00000109764	Klkb1	APS|Kal-3|Kal3|Klk3|PSA	kallikrein B, plasma 1	protein-coding	0.010000	0.467662	
mm_8800.1	chr1	161816608	161816808	-	1	NA	NA	NA	-28213	NM_010177	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.005000	0.288557	
mm_131422.1	chr16	14708076	14708276	+	1	NA	NA	NA	2317	NM_011415	20583	Mm.4272	NM_011415	ENSMUSG00000022676	Snai2	Slug|Slugh|Snail2	snail family zinc finger 2	protein-coding	0.005000	0.457711	
mm_33752.1	chr4	134315019	134315219	+	1	NA	NA	NA	-1	NM_001039048	433766	Mm.331961	NM_001039048	ENSMUSG00000028834	Trim63	MuRF1|RF1|Rnf28	tripartite motif-containing 63	protein-coding	0.035000	0.577114	
mm_69161.1	chr7	127195954	127196154	-	1	NA	NA	NA	23	NM_001285907	70233	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0.080000	0.542289	
mm_112775.1	chr13	20090171	20090371	+	1	NA	NA	NA	-236	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.030000	0.492537	
mm_27548.1	chr3	57847680	57847880	-	1	NA	NA	NA	-23	NM_019410	18645	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	0.175000	0.805970	
mm_144420.1	chr18	20963026	20963226	+	1	NA	NA	NA	18501	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.005000	0.328358	
mm_118386.1	chr13	117267388	117267588	-	1	NA	NA	NA	46915	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.010000	0.497512	
mm_138809.1	chr17	39846378	39846578	+	1	NA	NA	NA	3481	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.050000	0.527363	
mm_14227.1	chr2	127462892	127463092	+	1	NA	NA	NA	-18427	NM_029629	68126	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	0.025000	0.502488	
mm_21883.1	chr2	166155049	166155249	-	1	NA	NA	NA	136	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.145000	0.746269	
mm_93502.1	chr10	112928817	112929017	-	1	NA	NA	NA	109	NM_001033474	382423	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132|ENSMUSG00000074747	ataxin 7-like 3B	protein-coding	0.160000	0.726368	
mm_159323.1	chr3	17948399	17948599	+	1	NA	NA	NA	55	NM_029289	75439	Mm.27023	NM_029289	ENSMUSG00000027564	Cypt12	1700001F04Rik|AV209098	cysteine-rich perinuclear theca 12	protein-coding	0.050000	0.567164	
mm_166670.1	chr6	91706162	91706362	-	1	NA	NA	NA	22195	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.030000	0.547264	
mm_121075.1	chr14	98874474	98874674	+	1	NA	NA	NA	171562	NM_175245	76789	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0.005000	0.487562	
mm_100318.1	chr11	117987374	117987574	+	1	NA	NA	NA	617	NM_133757	74451	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.025000	0.437811	-35(GTCCTTTAAAGG,-,0.00),-34(TCCTTTAAAGGA,+,0.00),-34(TCCTTTAAAGGA,-,0.00),-33(CCTTTAAAGGAA,+,0.00)
mm_49704.1	chr6	34358047	34358247	+	1	NA	NA	NA	3983	NM_008012	14187	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0.030000	0.512438	
mm_24595.1	chr3	93445141	93445341	+	1	NA	NA	NA	2911	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.060000	0.557214	
mm_42725.1	chr5	120613012	120613212	+	1	NA	NA	NA	-18	NM_028041	71990	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0.120000	0.706468	3(GGGTCTAAGAGC,-,0.00)
mm_54630.1	chr6	38692940	38693140	-	1	NA	NA	NA	29971	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.000000	0.422886	
mm_106893.1	chr12	8012315	8012515	+	1	NA	NA	NA	34738	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.487562	
mm_144898.1	chr18	37143622	37143822	+	1	NA	NA	NA	-247	NM_001003672	353237	Mm.308500	NM_001003672	ENSMUSG00000102697	Pcdhac2	CNRc2	protocadherin alpha subfamily C, 2	protein-coding	0.095000	0.686567	
mm_117038.1	chr13	58275602	58275802	-	1	NA	NA	NA	-1514	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.020000	0.497512	
mm_42577.1	chr5	117252445	117252645	+	1	NA	NA	NA	35019	NM_018858	23980	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	0.020000	0.527363	
mm_157403.1	chrX	38431918	38432118	-	1	NA	NA	NA	24442	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.015000	0.482587	
mm_7915.1	chr1	133736290	133736490	-	1	NA	NA	NA	-9745	NR_105868	102466206		NR_105868	ENSMUSG00000098606	Mir6903	Gm27797|mmu-mir-6903	microRNA 6903	ncRNA	0.035000	0.582090	
mm_149027.1	chr19	8770901	8771101	+	1	NA	NA	NA	5	NM_025791	66836	Mm.440071	NM_025791	ENSMUSG00000010097	Tmem223	0610006I08Rik	transmembrane protein 223	protein-coding	0.065000	0.572139	
mm_36094.1	chr4	58499304	58499504	-	1	NA	NA	NA	-1	NM_001290486	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.015000	0.487562	
mm_140210.1	chr17	83795274	83795474	+	1	NA	NA	NA	51416	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.065000	0.497512	
mm_66301.1	chr7	38227867	38228067	-	1	NA	NA	NA	27	NM_024413	72287	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	0.085000	0.671642	
mm_6224.1	chr1	66928732	66928932	-	1	NA	NA	NA	6534	NM_001113387	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.005000	0.348259	
mm_161634.1	chr16	89837791	89837991	-	1	NA	NA	NA	-19539	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.010000	0.417910	
mm_49050.1	chr6	4903259	4903459	+	1	NA	NA	NA	39	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.200000	0.835821	
mm_48083.1	chr5	136956604	136956804	-	1	NA	NA	NA	3429	NM_001347504	66437	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	0.040000	0.537313	
mm_114344.1	chr13	60902004	60902204	+	1	NA	NA	NA	2743	NM_026429	116913	Mm.443229	NM_026429	ENSMUSG00000062705	Tpbpb	1600012N09Rik	trophoblast specific protein beta	protein-coding	0.010000	0.373134	
mm_24061.1	chr3	87915398	87915598	+	1	NA	NA	NA	-4046	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.000000	0.457711	
mm_113984.1	chr13	52582600	52582800	+	1	NA	NA	NA	-737	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.015000	0.552239	
mm_11856.1	chr2	47545229	47545429	+	1	NA	NA	NA	-1268780	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.005000	0.497512	
mm_38398.1	chr4	138863503	138863703	-	1	NA	NA	NA	-134	NM_001122954	18784	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	0.020000	0.572139	
mm_64320.1	chr7	141949581	141949781	+	1	NA	NA	NA	-70	NM_001009930	75770	Mm.274868	NM_029426	ENSMUSG00000053046	Brsk2	4833424K13Rik|SAD-A|SADA	BR serine/threonine kinase 2	protein-coding	0.110000	0.691542	
mm_165108.1	chr19	57245259	57245459	-	1	NA	NA	NA	-28601	NR_045319	78120	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	0.015000	0.492537	
mm_19118.1	chr2	80010023	80010223	-	1	NA	NA	NA	-101724	NM_001009978	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.010000	0.353234	
mm_53037.1	chr6	124570222	124570422	+	1	NA	NA	NA	-108	NM_001113356	667277	Mm.481484	NM_001113356	ENSMUSG00000098470	C1rb	Gm8551|mC1rB	complement component 1, r subcomponent B	protein-coding	0.010000	0.477612	
mm_91982.1	chr10	61783840	61784040	-	1	NA	NA	NA	-76	NM_207000	404634	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	0.075000	0.656716	
mm_93628.1	chr10	117278812	117279012	-	1	NA	NA	NA	3360	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.000000	0.407960	-86(GCTTTAAGACCA,+,0.00),-19(CTCTTTAAGAGG,-,0.00),-18(TCTTTAAGAGGA,+,0.00)
mm_136287.1	chr16	91372587	91372787	-	1	NA	NA	NA	-96	NM_010509	15976	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.055000	0.567164	
mm_51632.1	chr6	85587468	85587668	+	1	NA	NA	NA	37	NM_145223	236266	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	Alstrom syndrome 1	protein-coding	0.100000	0.716418	
mm_89168.1	chr10	86310845	86311045	+	1	NA	NA	NA	10533	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.005000	0.467662	25(CTGTATTAAAGA,-,0.00)
mm_151327.1	chr19	55893270	55893470	+	1	NA	NA	NA	-1951	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.020000	0.427861	
mm_20035.1	chr2	119787419	119787619	-	1	NA	NA	NA	18	NM_177294	68925	Mm.30496	NM_177294	ENSMUSG00000034032	Rpap1	1190005L06Rik|A730023M06Rik|AU041788|AW107702|mKIAA1403	RNA polymerase II associated protein 1	protein-coding	0.090000	0.661692	
mm_137961.1	chr17	33432097	33432297	+	1	NA	NA	NA	-702	NM_183282	69481	Mm.154333	NM_183282	ENSMUSG00000092519	Actl9	1700029I08Rik|AV259599	actin-like 9	protein-coding	0.000000	0.492537	
mm_31752.1	chr4	63345066	63345266	+	1	NA	NA	NA	610	NM_008768	18405	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding	0.015000	0.442786	
mm_28135.1	chr3	87174544	87174744	-	1	NA	NA	NA	103	NM_001170985	170643	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kin of IRRE like (Drosophila)	protein-coding	0.090000	0.681592	
mm_122235.1	chr14	33193833	33194033	-	1	NA	NA	NA	-8867	NM_001146022	545030	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.000000	0.417910	
mm_6932.1	chr1	85112386	85112586	-	1	NA	NA	NA	-2633	NM_213615	381287	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.025000	0.427861	
mm_154400.1	chrM	13738	13938	+	1	NA	NA	NA	NA	NA									0.010000	0.333333	
mm_15724.1	chr2	164078351	164078551	+	1	NA	NA	NA	4273	NM_021420	58231	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.000000	0.278607	
mm_40688.1	chr5	65763670	65763870	+	1	NA	NA	NA	249	NM_001024917	333789	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.145000	0.800995	
mm_7405.1	chr1	119053529	119053729	-	1	NA	NA	NA	-10	NM_001081125	14633	Mm.273292	NM_001081125	ENSMUSG00000048402	Gli2	-	GLI-Kruppel family member GLI2	protein-coding	0.115000	0.661692	
mm_120575.1	chr14	69171911	69172111	+	1	NA	NA	NA	-168	NR_045931	73554	Mm.320005	NR_045931	ENSMUSG00000092499	1700092C10Rik	-	RIKEN cDNA 1700092C10 gene	ncRNA	0.040000	0.542289	
mm_165170.1	chr2	26911365	26911565	+	1	NA	NA	NA	658	NM_013721	27176	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	0.045000	0.587065	
mm_116011.1	chr13	24635820	24636020	-	1	NA	NA	NA	-2728	NM_001080381	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.000000	0.482587	
mm_160347.1	chr8	20363074	20363274	-	1	NA	NA	NA	28	NM_001177408	100040599	Mm.491087	NM_001177408	ENSMUSG00000074449	Gm15319	OTTMUSG00000020118	predicted gene 15319	protein-coding	0.005000	0.432836	
mm_32867.1	chr4	118429614	118429814	+	1	NA	NA	NA	13	NM_001039176	54325	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	0.025000	0.631841	
mm_59330.1	chr7	25394197	25394397	+	1	NA	NA	NA	-416	NR_015569	654804	Mm.389841	NM_001039540	ENSMUSG00000053714	4732471J01Rik	-	RIKEN cDNA 4732471J01 gene	ncRNA	0.005000	0.452736	
mm_4992.1	chr1	191817293	191817493	+	1	NA	NA	NA	-4080	NM_010892	18005	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0.015000	0.457711	
mm_160447.1	chr8	104831516	104831716	+	1	NA	NA	NA	-28	NM_198171	234669	Mm.443387	NM_198171	ENSMUSG00000050097	Ces2b	-	carboxyesterase 2B	protein-coding	0.020000	0.487562	
mm_103548.1	chr11	77685894	77686094	-	1	NA	NA	NA	-145	NM_001024205	68564	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0.070000	0.606965	
mm_156062.1	chrX	109160286	109160486	+	1	NA	NA	NA	-36370	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.005000	0.318408	
mm_160982.1	chr11	102946573	102946773	-	1	NA	NA	NA	-212	NM_011795	23829	Mm.57154	NM_011795	ENSMUSG00000045532	C1ql1	C1qrf|CRF|CTRP14|gliacolin	complement component 1, q subcomponent-like 1	protein-coding	0.145000	0.796020	
mm_158042.1	chrX	98890450	98890650	-	1	NA	NA	NA	475	NM_052976	94190	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	0.075000	0.681592	
mm_101329.1	chr11	22972809	22973009	-	1	NA	NA	NA	904	NM_011663	22183	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.085000	0.582090	
mm_53332.1	chr6	129233722	129233922	+	1	NA	NA	NA	4223	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.010000	0.467662	
mm_157002.1	chrX	7572753	7572953	-	1	NA	NA	NA	-747	NR_029473	78185	Mm.160055	NR_029473	ENSMUSG00000039545	Ppp1r3fos	4930524L23Rik	protein phosphatase 1, regulatory subunit 3F, opposite strand	ncRNA	0.025000	0.502488	
mm_55442.1	chr6	67037308	67037508	-	1	NA	NA	NA	-1	NM_007836	13197	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.060000	0.641791	
mm_124754.1	chr15	6643597	6643797	+	1	NA	NA	NA	63850	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.030000	0.447761	
mm_90608.1	chr10	128337649	128337849	+	1	NA	NA	NA	22	NM_026444	12974	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0.095000	0.701493	
mm_138607.1	chr17	35649683	35649883	+	1	NA	NA	NA	75	NM_001163194	433102	Mm.136760	NM_001163194	ENSMUSG00000090509	Sfta2	EG433102	surfactant associated 2	protein-coding	0.005000	0.527363	
mm_104265.1	chr11	88994220	88994420	-	1	NA	NA	NA	-5083	NM_009546	217069	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.015000	0.512438	
mm_81841.1	chr9	118506158	118506358	+	1	NA	NA	NA	-60	NM_018748	54214	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	0.140000	0.736318	
mm_120212.1	chr14	62555527	62555727	+	1	NA	NA	NA	-110	NM_001243857	629059	Mm.291864	NM_001243857	ENSMUSG00000035184	Fam124a	EG629059	family with sequence similarity 124, member A	protein-coding	0.130000	0.706468	
mm_172163.1	chr6	44792921	44793121	+	1	NA	NA	NA	-267040	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.070000	0.557214	
mm_79197.1	chr9	48495164	48495364	+	1	NA	NA	NA	66	NM_001326355	67010	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	0.090000	0.651741	
mm_42888.1	chr5	122391809	122392009	+	1	NA	NA	NA	31	NM_019824	56378	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.115000	0.621891	
mm_108949.1	chr12	102313033	102313233	+	1	NA	NA	NA	29492	NM_001161365	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.015000	0.611940	
mm_124472.1	chr14	121379032	121379232	-	1	NA	NA	NA	98	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.130000	0.766169	
mm_28373.1	chr3	89913094	89913294	-	1	NA	NA	NA	2	NM_001310676	16194	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.095000	0.676617	
mm_80088.1	chr9	70220626	70220826	+	1	NA	NA	NA	13376	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.010000	0.542289	
mm_322.1	chr1	24678559	24678759	+	1	NA	NA	NA	115	NM_026719	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.115000	0.701493	
mm_51695.1	chr6	86571015	86571215	+	1	NA	NA	NA	43714	NR_037961	72012	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.015000	0.557214	
mm_90165.1	chr10	119413336	119413536	+	1	NA	NA	NA	-8	NR_040578	67081	Mm.72644	NR_040578	ENSMUSG00000100558	1700025F24Rik	-	RIKEN cDNA 1700025F24 gene	ncRNA	0.040000	0.552239	
mm_148364.1	chr18	85698114	85698314	-	1	NA	NA	NA	-696738	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.050000	0.562189	
mm_155852.1	chrX	101276089	101276289	+	1	NA	NA	NA	2098	NM_021521	59024	Mm.20873	NM_021521	ENSMUSG00000079487	Med12	230kDa|Mopa|OPA-1|Tnrc11|Trap230	mediator complex subunit 12	protein-coding	0.010000	0.487562	
mm_93819.1	chr10	121473989	121474189	-	1	NA	NA	NA	2161	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.015000	0.442786	
mm_11388.1	chr2	31446246	31446446	+	1	NA	NA	NA	-23924	NM_007494	11898	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.020000	0.487562	
mm_103702.1	chr11	79516395	79516595	-	1	NA	NA	NA	7267	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.005000	0.442786	
mm_76903.1	chr8	105827527	105827727	-	1	NA	NA	NA	-117	NM_024445	72236	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	0.030000	0.552239	
mm_51445.1	chr6	80174008	80174208	+	1	NA	NA	NA	154465	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.000000	0.467662	
mm_106700.1	chr12	3572352	3572552	+	1	NA	NA	NA	61	NR_027870	13528	Mm.286202	NM_007886	ENSMUSG00000071454	Dtnb	-	dystrobrevin, beta	protein-coding	0.205000	0.845771	
mm_102060.1	chr11	52253729	52253929	-	1	NA	NA	NA	21834	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.030000	0.606965	
mm_83259.1	chr9	42439468	42439668	-	1	NA	NA	NA	32658	NM_173038	272589	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0.015000	0.497512	
mm_141386.1	chr17	29090789	29090989	-	1	NA	NA	NA	-90	NM_001111099	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.010000	0.577114	
mm_130889.1	chr15	102350562	102350762	-	1	NA	NA	NA	97	NM_153416	223921	Mm.352946	NM_153416	ENSMUSG00000036678	Aaas	AAA|ADRACALA|D030041N15Rik|GL003	achalasia, adrenocortical insufficiency, alacrimia	protein-coding	0.090000	0.616915	
mm_105404.1	chr11	103504798	103504998	-	1	NA	NA	NA	-92234	NM_183034	353047	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.045000	0.562189	
mm_81087.1	chr9	106313337	106313537	+	1	NA	NA	NA	32376	NM_027354	70235	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	0.010000	0.512438	
mm_115324.1	chr13	112438130	112438330	+	1	NA	NA	NA	-25840	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.035000	0.542289	
mm_95563.1	chr11	52360957	52361157	+	1	NA	NA	NA	195	NM_011694	22333	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.155000	0.771144	
mm_91698.1	chr10	44003765	44003965	-	1	NA	NA	NA	981	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.105000	0.681592	
mm_79030.1	chr9	46022352	46022552	+	1	NA	NA	NA	9632	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.015000	0.592040	
mm_19055.1	chr2	77280475	77280675	-	1	NA	NA	NA	17	NM_175465	228071	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.205000	0.880597	
mm_58989.1	chr7	19094524	19094724	+	1	NA	NA	NA	80	NM_011383	20475	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0.105000	0.741294	
mm_100182.1	chr11	116624355	116624555	+	1	NA	NA	NA	-203	NM_001167680	217344	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.050000	0.552239	-42(CCACTTATGGCC,+,0.00)
mm_61386.1	chr7	73105200	73105400	+	1	NA	NA	NA	-3232	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	0.005000	0.497512	
mm_89957.1	chr10	111295020	111295220	+	1	NA	NA	NA	-3559	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.010000	0.348259	
mm_29284.1	chr3	107696111	107696311	-	1	NA	NA	NA	337	NM_145542	229709	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	0.115000	0.706468	
mm_110662.1	chr12	59219370	59219570	-	1	NA	NA	NA	13	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.130000	0.701493	
mm_62047.1	chr7	92348131	92348331	+	1	NA	NA	NA	113261	NM_001243047	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.383085	
mm_35068.1	chr4	6494156	6494356	-	1	NA	NA	NA	-39985	NM_010945	18201	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.005000	0.442786	-46(AGCTTTATAAGC,-,0.00),-44(CTTTATAAGCCC,+,0.00)
mm_169330.1	chr14	117547488	117547688	+	1	NA	NA	NA	406259	NR_105747	102465148		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0.050000	0.626866	
mm_128832.1	chr15	68252613	68252813	-	1	NA	NA	NA	6143	NM_001145888	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.010000	0.323383	
mm_140724.1	chr17	15434759	15434959	-	1	NA	NA	NA	38613	NM_024203	67544	Mm.35039	NM_024203	ENSMUSG00000014763	Fam120b	4932442K08Rik|AW049283|AW413338|CCPG|Pgcc1|mKIAA1838	family with sequence similarity 120, member B	protein-coding	0.015000	0.492537	
mm_12702.1	chr2	76537396	76537596	+	1	NA	NA	NA	38490	NM_001290735	99031	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding	0.020000	0.532338	
mm_25895.1	chr3	131110711	131110911	+	1	NA	NA	NA	514	NM_001276402	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.045000	0.502488	
mm_15985.1	chr2	166826971	166827171	+	1	NA	NA	NA	21490	NM_001085495	99371	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.015000	0.557214	
mm_166344.1	chr5	117414365	117414565	+	1	NA	NA	NA	463	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.005000	0.547264	41(CCCTTTTTAGGG,-,0.00),43(CTTTTTAGGGAC,+,0.00)
mm_138026.1	chr17	33915811	33916011	+	1	NA	NA	NA	-265	NM_020625	81630	Mm.482096	NM_020625	ENSMUSG00000051390	Zbtb22	1110008J20Rik|AI265210|AI415166|Bing1|Zfp297	zinc finger and BTB domain containing 22	protein-coding	0.045000	0.582090	
mm_15507.1	chr2	158153105	158153305	+	1	NA	NA	NA	-6813	NM_009373	21817	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.005000	0.502488	
mm_89166.1	chr10	86301087	86301287	+	1	NA	NA	NA	775	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.035000	0.477612	
mm_104075.1	chr11	86586733	86586933	-	1	NA	NA	NA	-2675	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.472637	
mm_91376.1	chr10	30200500	30200700	-	1	NA	NA	NA	-60	NM_001109747	66311	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding	0.075000	0.621891	
mm_114861.1	chr13	93340188	93340388	+	1	NA	NA	NA	32254	NM_152134	26556	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0.010000	0.363184	13(GTTTCTATAAGC,-,0.00)
mm_97620.1	chr11	78956429	78956629	+	1	NA	NA	NA	28395	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.030000	0.587065	
mm_147083.1	chr18	35627169	35627369	-	1	NA	NA	NA	-42	NM_011397	20522	Mm.22702	NM_011397	ENSMUSG00000024354	Slc23a1	D18Ucla2|SVCT1|Slc23a2|YSPL3	solute carrier family 23 (nucleobase transporters), member 1	protein-coding	0.025000	0.502488	
mm_17699.1	chr2	32353218	32353418	-	1	NA	NA	NA	11	NM_001301737	13429	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	0.160000	0.751244	
mm_85456.1	chr9	105395163	105395363	-	1	NA	NA	NA	24	NM_172461	208583	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding	0.120000	0.661692	
mm_136739.1	chr17	8340403	8340603	+	1	NA	NA	NA	97	NR_028280	320111	Mm.442510	NM_178774	ENSMUSG00000055945	Prr18	9630019K15Rik	proline rich 18	protein-coding	0.035000	0.547264	
mm_168526.1	chr11	6011274	6011474	+	1	NA	NA	NA	54374	NM_001174054	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	0.070000	0.547264	-34(CCCTATAAAAAG,-,0.00)
mm_136076.1	chr16	84834781	84834981	-	1	NA	NA	NA	117	NM_001302216	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.105000	0.666667	
mm_122549.1	chr14	48667341	48667541	-	1	NA	NA	NA	203	NM_001286482	18424	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	0.030000	0.422886	
mm_87293.1	chr10	42502090	42502290	+	1	NA	NA	NA	136	NM_017472	54198	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.165000	0.751244	
mm_44276.1	chr5	5749200	5749400	-	1	NA	NA	NA	17	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.150000	0.761194	
mm_93743.1	chr10	120158721	120158921	-	1	NA	NA	NA	42716	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.035000	0.452736	-66(ATGTATTAAAGC,-,0.00)
mm_129825.1	chr15	83122669	83122869	-	1	NA	NA	NA	32	NM_029101	74778	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.115000	0.696517	
mm_112855.1	chr13	20840779	20840979	+	1	NA	NA	NA	46766	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.368159	-55(TCTTTTATAGGA,+,0.00),50(TTTTTAATAGTC,+,0.00)
mm_87148.1	chr10	34898126	34898326	+	1	NA	NA	NA	414826	NM_010237	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.015000	0.427861	
mm_128790.1	chr15	66810520	66810720	-	1	NA	NA	NA	21209	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.000000	0.442786	
mm_167543.1	chr9	26760288	26760488	+	1	NA	NA	NA	8826	NM_029792	76898	Mm.218788	NM_029792	ENSMUSG00000045994	B3gat1	0710007K08Rik|AI846286|GlcAT-P|Glcatp|Hnk1	beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	protein-coding	0.020000	0.547264	
mm_71466.1	chr8	46534537	46534737	+	1	NA	NA	NA	-17432	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.045000	0.537313	
mm_15929.1	chr2	165072365	165072565	+	1	NA	NA	NA	16829	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.005000	0.472637	-76(GGGTCTTAAAGC,-,0.00)
mm_158340.1	chrX	134111763	134111963	-	1	NA	NA	NA	-9	NM_172203	237038	Mm.67938	NM_172203	ENSMUSG00000031257	Nox1	GP91-2|MOX1|NOH-1|NOH1|NOX1a|NOX1alpha|Nox-1	NADPH oxidase 1	protein-coding	0.015000	0.442786	
mm_62059.1	chr7	92447523	92447723	+	1	NA	NA	NA	-113526	NM_025515	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.015000	0.507463	
mm_152901.1	chr19	25096395	25096595	-	1	NA	NA	NA	96966	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.025000	0.502488	
mm_118825.1	chr14	25586451	25586651	+	1	NA	NA	NA	-253	NR_033492	77592	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0.005000	0.497512	39(TGGTTTAAAGGG,-,0.00)
mm_8250.1	chr1	138619574	138619774	-	1	NA	NA	NA	83	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.130000	0.761194	
mm_155103.1	chrX	48343613	48343813	+	1	NA	NA	NA	2355	NM_178782	320376	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	0.090000	0.651741	
mm_160073.1	chr7	6515240	6515440	-	1	NA	NA	NA	87	NM_207136	269862	Mm.377869	NM_207136	ENSMUSG00000048067	Olfr1349	MOR232-8	olfactory receptor 1349	protein-coding	0.060000	0.621891	
mm_51005.1	chr6	63913336	63913536	+	1	NA	NA	NA	656579	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.005000	0.318408	34(TTTTTTATAGAA,+,0.00)
mm_166965.1	chr7	44480781	44480981	+	1	NA	NA	NA	-3636	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.407960	
mm_13761.1	chr2	118388528	118388728	+	1	NA	NA	NA	11	NM_013719	27103	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	0.090000	0.736318	
mm_48869.1	chr5	150566323	150566523	-	1	NA	NA	NA	28102	NM_133898	100637	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.010000	0.492537	
mm_99019.1	chr11	98907747	98907947	+	1	NA	NA	NA	-42	NM_001025779	23834	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0.085000	0.577114	
mm_19685.1	chr2	103455049	103455249	-	1	NA	NA	NA	30004	NM_009804	12359	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0.020000	0.527363	
mm_144935.1	chr18	37730901	37731101	+	1	NA	NA	NA	-153	NM_033577	93702	Mm.247203	NM_033577	ENSMUSG00000103749	Pcdhgb5	-	protocadherin gamma subfamily B, 5	protein-coding	0.075000	0.532338	
mm_48553.1	chr5	143018074	143018274	-	1	NA	NA	NA	57819	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.005000	0.472637	
mm_116095.1	chr13	28784217	28784417	-	1	NA	NA	NA	-73444	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.025000	0.442786	
mm_171951.1	chr5	77260246	77260446	+	1	NA	NA	NA	-5148	NM_011263	19712	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.015000	0.577114	
mm_168163.1	chr10	46804654	46804854	-	1	NA	NA	NA	560005	NR_028276	108637		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0.040000	0.482587	-28(CTTTAAATACCC,+,0.00)
mm_130888.1	chr15	102350499	102350699	-	1	NA	NA	NA	160	NM_153416	223921	Mm.352946	NM_153416	ENSMUSG00000036678	Aaas	AAA|ADRACALA|D030041N15Rik|GL003	achalasia, adrenocortical insufficiency, alacrimia	protein-coding	0.080000	0.636816	
mm_23799.1	chr3	79860529	79860729	+	1	NA	NA	NA	-17967	NM_027495	70652	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.000000	0.407960	
mm_30819.1	chr4	21862046	21862246	+	1	NA	NA	NA	-13698	NR_028384	67735	Mm.391650	NR_028384		4930528A17Rik	-	RIKEN cDNA 4930528A17 gene	ncRNA	0.025000	0.432836	
mm_89436.1	chr10	91123326	91123526	+	1	NA	NA	NA	537	NM_133668	18674	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.050000	0.671642	
mm_164721.1	chr17	57024726	57024926	+	1	NA	NA	NA	6681	NM_010613	16549	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0.035000	0.582090	
mm_10202.1	chr2	4935948	4936148	+	1	NA	NA	NA	17052	NM_010726	16922	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.025000	0.497512	
mm_118265.1	chr13	112552025	112552225	-	1	NA	NA	NA	28537	NM_139299	218624	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	0.010000	0.432836	-19(CTGCATTAAAGG,-,0.00),-17(GCATTAAAGGAC,+,0.00)
mm_166592.1	chr6	56902022	56902222	-	1	NA	NA	NA	-236	NM_001252374	107569	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0.010000	0.492537	
mm_57194.1	chr6	122850014	122850214	-	1	NA	NA	NA	6043	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.025000	0.482587	
mm_2949.1	chr1	132342268	132342468	+	1	NA	NA	NA	25580	NM_001311108	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.010000	0.442786	59(ACTTTTATAAGG,-,0.00)
mm_150642.1	chr19	41848414	41848614	+	1	NA	NA	NA	-382	NM_177603	212398	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	0.080000	0.562189	
mm_45070.1	chr5	43786015	43786215	-	1	NA	NA	NA	-3966	NM_178729	242960	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0.025000	0.492537	
mm_85730.1	chr9	108347633	108347833	-	1	NA	NA	NA	-98	NM_001311157	22258	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0.125000	0.721393	
mm_50438.1	chr6	48860249	48860449	+	1	NA	NA	NA	18693	NM_001098271	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.040000	0.567164	
mm_116487.1	chr13	44476956	44477156	-	1	NA	NA	NA	37329	NR_045489	69491	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.015000	0.542289	
mm_25747.1	chr3	123264705	123264905	+	1	NA	NA	NA	-2691	NM_027135	69608	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	0.020000	0.497512	
mm_58274.1	chr6	145433985	145434185	-	1	NA	NA	NA	840	NM_028742	74071	Mm.441497	NM_028742	ENSMUSG00000054966	Lmntd1	4933403M22Rik|AI482300|Ifltd1|Lmna-rs1|Lmna1|OTTMUSG00000022798	lamin tail domain containing 1	protein-coding	0.025000	0.522388	
mm_101580.1	chr11	34406880	34407080	-	1	NA	NA	NA	92158	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.015000	0.482587	
mm_139535.1	chr17	56709820	56710020	+	1	NA	NA	NA	7001	NM_178926	106639	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0.005000	0.567164	
mm_78952.1	chr9	45138695	45138895	+	1	NA	NA	NA	-247	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.110000	0.741294	
mm_70867.1	chr8	25015005	25015205	+	1	NA	NA	NA	1817	NM_001270996	11502	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	0.015000	0.522388	
mm_143157.1	chr17	57223809	57224009	-	1	NA	NA	NA	4227	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.025000	0.577114	
mm_167090.1	chr7	105640319	105640519	+	1	NA	NA	NA	-3	NM_029802	76932	Mm.41637	NM_029802	ENSMUSG00000030881	Arfip2	2310002N04Rik|POR|Por1	ADP-ribosylation factor interacting protein 2	protein-coding	0.055000	0.582090	
mm_99757.1	chr11	106751528	106751728	+	1	NA	NA	NA	402	NM_001033435	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.015000	0.368159	
mm_75214.1	chr8	39605508	39605708	-	1	NA	NA	NA	37070	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.368159	
mm_28730.1	chr3	95735879	95736079	-	1	NA	NA	NA	-1006	NR_105981	102466787		NR_105981	ENSMUSG00000098737	Mir7014	Gm27837|mmu-mir-7014	microRNA 7014	ncRNA	0.065000	0.646766	
mm_71936.1	chr8	70315697	70315897	+	1	NA	NA	NA	22	NM_001163282	14559	Mm.258280	NM_008107	ENSMUSG00000087408	Gdf1	AI385651|Gdf-1	growth differentiation factor 1	protein-coding	0.125000	0.741294	
mm_64801.1	chr7	6691050	6691250	-	1	NA	NA	NA	5282	NM_011769	22776	Mm.89976	NM_011769	ENSMUSG00000002266	Zim1	-	zinc finger, imprinted 1	protein-coding	0.000000	0.497512	
mm_104623.1	chr11	97309361	97309561	-	1	NA	NA	NA	-6255	NM_025927	67036	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.015000	0.552239	
mm_86310.1	chr9	122843881	122844081	-	1	NA	NA	NA	22025	NM_173364	235682	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	0.000000	0.537313	
mm_130671.1	chr15	100674578	100674778	-	1	NA	NA	NA	-5178	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.025000	0.492537	
mm_154946.1	chrX	36328331	36328531	+	1	NA	NA	NA	22	NM_028894	74365	Mm.327654	NM_028894	ENSMUSG00000016239	Lonrf3	4932412G04Rik|5730439E01Rik|A830039N02Rik|AU023707|Rnf127	LON peptidase N-terminal domain and ring finger 3	protein-coding	0.125000	0.651741	
mm_84280.1	chr9	62811741	62811941	-	1	NA	NA	NA	-193	NM_010193	14155	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.135000	0.716418	
mm_116775.1	chr13	52980919	52981119	-	1	NA	NA	NA	20	NM_017373	18030	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0.205000	0.800995	
mm_41640.1	chr5	98030631	98030831	+	1	NA	NA	NA	231	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.055000	0.651741	
mm_67277.1	chr7	78432498	78432698	-	1	NA	NA	NA	145240	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	0.020000	0.427861	
mm_20637.1	chr2	132020655	132020855	-	1	NA	NA	NA	9233	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.015000	0.542289	
mm_150319.1	chr19	34573819	34574019	+	1	NA	NA	NA	-9610	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.005000	0.407960	
mm_131003.1	chr15	103538226	103538426	-	1	NA	NA	NA	-334	NM_021391	58200	Mm.143788	NM_021391	ENSMUSG00000022490	Ppp1r1a	0610038N18Rik|I-1	protein phosphatase 1, regulatory (inhibitor) subunit 1A	protein-coding	0.000000	0.412935	
mm_165115.1	chr19	58859914	58860114	+	1	NA	NA	NA	970	NM_175199	73442	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0.030000	0.537313	
mm_67921.1	chr7	99862565	99862765	-	1	NA	NA	NA	3447	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.010000	0.378109	
mm_139044.1	chr17	46248004	46248204	+	1	NA	NA	NA	24	NM_145353	28064	Mm.248769	NM_145353	ENSMUSG00000071074	Yipf3	C6orf109|D17Wsu94e|KLIP1	Yip1 domain family, member 3	protein-coding	0.115000	0.671642	
mm_141607.1	chr17	32805604	32805804	-	1	NA	NA	NA	4227	NM_001267583	240063	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	0.005000	0.402985	
mm_117223.1	chr13	64152333	64152533	-	1	NA	NA	NA	766	NM_175494	238673	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	0.090000	0.696517	
mm_152393.1	chr19	10525066	10525266	-	1	NA	NA	NA	43	NM_025333	66072	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	0.105000	0.666667	
mm_117855.1	chr13	98813200	98813400	-	1	NA	NA	NA	2149	NM_172591	218503	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.005000	0.442786	
mm_134726.1	chr16	22898812	22899012	-	1	NA	NA	NA	-4526	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.055000	0.606965	
mm_1611.1	chr1	74391294	74391494	+	1	NA	NA	NA	-215	NM_153088	227292	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.100000	0.661692	
mm_127589.1	chr15	102365131	102365331	+	1	NA	NA	NA	1040	NM_130458	170574	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	0.010000	0.512438	
mm_73816.1	chr8	117401354	117401554	+	1	NA	NA	NA	-51569	NR_106045	102466801		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.005000	0.422886	-74(TTCTTTATAAGA,-,0.00)
mm_59486.1	chr7	27473667	27473867	+	1	NA	NA	NA	-73	NM_133210	170742	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	0.065000	0.676617	
mm_160612.1	chr9	85842289	85842489	+	1	NA	NA	NA	9	NM_011627	21983	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	0.045000	0.512438	
mm_6259.1	chr1	69108167	69108367	-	1	NA	NA	NA	-208	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	0.025000	0.542289	
mm_91512.1	chr10	37138399	37138599	-	1	NA	NA	NA	427	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.045000	0.557214	
mm_131822.1	chr16	22929089	22929289	+	1	NA	NA	NA	8967	NM_001083904	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.015000	0.577114	
mm_127354.1	chr15	100619806	100620006	+	1	NA	NA	NA	4244	NM_011873	23994	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0.000000	0.402985	
mm_30462.1	chr3	154091687	154091887	-	1	NA	NA	NA	118351	NM_001081263	242259	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0.010000	0.358209	
mm_5347.1	chr1	25027166	25027366	-	1	NA	NA	NA	250688	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding	0.020000	0.497512	
mm_39873.1	chr5	31076944	31077144	+	1	NA	NA	NA	16483	NM_011773	22784	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.035000	0.611940	
mm_171196.1	chr3	46936001	46936201	-	1	NA	NA	NA	-35319	NR_105800	102465199		NR_105800	ENSMUSG00000098417	Mir6379	Gm27730|mmu-mir-6379	microRNA 6379	ncRNA	0.060000	0.621891	
mm_42851.1	chr5	122209820	122210020	+	1	NA	NA	NA	191	NM_001042489	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.020000	0.611940	
mm_65223.1	chr7	19700319	19700519	-	1	NA	NA	NA	-1231	NM_009696	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.015000	0.577114	
mm_121475.1	chr14	121035342	121035542	+	1	NA	NA	NA	-132	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.090000	0.781095	
mm_75892.1	chr8	70892655	70892855	-	1	NA	NA	NA	2	NM_053248	114479	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	0.130000	0.691542	
mm_147978.1	chr18	67489319	67489519	-	1	NA	NA	NA	24570	NM_144867	225655	Mm.221420	NM_144867	ENSMUSG00000024530	Slmo1	A230074A19Rik|BC019561|Prelid3a	slowmo homolog 1 (Drosophila)	protein-coding	0.000000	0.417910	
mm_113503.1	chr13	37578294	37578494	+	1	NA	NA	NA	233049	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.010000	0.542289	
mm_134443.1	chr16	18248636	18248836	-	1	NA	NA	NA	-42	NM_011239	19385	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	0.135000	0.691542	
mm_15923.1	chr2	165066754	165066954	+	1	NA	NA	NA	11218	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.005000	0.482587	
mm_127922.1	chr15	9748743	9748943	-	1	NA	NA	NA	25	NM_177123	320277	Mm.127822	NM_177123	ENSMUSG00000072663	Spef2	C230086A09Rik	sperm flagellar 2	protein-coding	0.035000	0.567164	
mm_123004.1	chr14	54993303	54993503	-	1	NA	NA	NA	1146	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.020000	0.562189	
mm_49910.1	chr6	39021571	39021771	+	1	NA	NA	NA	45915	NR_040523	69986	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.000000	0.417910	
mm_136828.1	chr17	12614652	12614852	+	1	NA	NA	NA	30563	NM_013667	20518	Mm.17322	NM_013667	ENSMUSG00000040966	Slc22a2	Oct2|Orct2	solute carrier family 22 (organic cation transporter), member 2	protein-coding	0.025000	0.512438	
mm_80091.1	chr9	70220981	70221181	+	1	NA	NA	NA	13731	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.005000	0.457711	42(TTGTTTAAAAAG,-,0.00)
mm_97274.1	chr11	75999837	76000037	+	1	NA	NA	NA	25	NM_198637	74230	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding	0.075000	0.606965	
mm_19020.1	chr2	76945148	76945348	-	1	NA	NA	NA	37299	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.030000	0.517413	
mm_142538.1	chr17	46552765	46552965	-	1	NA	NA	NA	1024	NR_105942	102466778		NR_105942	ENSMUSG00000106514	Mir6976	mmu-mir-6976	microRNA 6976	ncRNA	0.015000	0.502488	
mm_27369.1	chr3	50438705	50438905	-	1	NA	NA	NA	4808	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.015000	0.412935	
mm_78568.1	chr9	36431729	36431929	+	1	NA	NA	NA	-55	NM_001167586	639025	Mm.386535	NM_001167586	ENSMUSG00000023093	Gm7257	EG639025|Pate-q|Pate12	predicted gene 7257	protein-coding	0.000000	0.507463	-15(GCCTATATGGGA,+,0.00)
mm_703.1	chr1	40681489	40681689	+	1	NA	NA	NA	-123	NM_001033289	226999	Mm.256414	NM_001033289	ENSMUSG00000026062	Slc9a2	2210416H12Rik|4932415O19Rik|AV333884|NHE2	solute carrier family 9 (sodium/hydrogen exchanger), member 2	protein-coding	0.155000	0.835821	
mm_113696.1	chr13	43125774	43125974	+	1	NA	NA	NA	3035	NM_001005748	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.015000	0.487562	
mm_143398.1	chr17	70747619	70747819	-	1	NA	NA	NA	99058	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.025000	0.492537	
mm_141122.1	chr17	26095372	26095572	-	1	NA	NA	NA	-2	NM_019731	56520	Mm.41787	NM_019731	ENSMUSG00000024177	Nme4	2610027N22Rik|2810024O08Rik|5730493H09Rik|NM23-M4|Nm23M4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding	0.110000	0.716418	28(CCTTTTCGGGCG,+,0.00)
mm_87099.1	chr10	33139018	33139218	+	1	NA	NA	NA	55635	NM_029726	76757	Mm.338508	NM_029726	ENSMUSG00000019787	Trdn	2310045H21Rik|EG432451|TDN	triadin	protein-coding	0.025000	0.417910	
mm_102884.1	chr11	69410624	69410824	-	1	NA	NA	NA	2951	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.050000	0.597015	
mm_77261.1	chr8	115707368	115707568	-	1	NA	NA	NA	-574	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.080000	0.601990	
mm_108513.1	chr12	83993307	83993507	+	1	NA	NA	NA	5546	NM_134188	171210	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	0.025000	0.432836	
mm_89112.1	chr10	84646531	84646731	+	1	NA	NA	NA	24194	NM_027423	70428	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	0.025000	0.457711	
mm_26901.1	chr3	19289939	19290139	-	1	NA	NA	NA	21283	NM_001122759	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.005000	0.333333	-26(CATTTTAAAGGG,+,0.00)
mm_9459.1	chr1	172894874	172895074	-	1	NA	NA	NA	80	NM_011318	20219	Mm.330510	NM_011318	ENSMUSG00000026542	Apcs	Sap	serum amyloid P-component	protein-coding	0.005000	0.447761	
mm_85469.1	chr9	105764061	105764261	-	1	NA	NA	NA	45487	NM_172927	245026	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0.010000	0.368159	
mm_87547.1	chr10	53597015	53597215	+	1	NA	NA	NA	154	NM_025541	66403	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0.115000	0.601990	
mm_108571.1	chr12	84855356	84855556	+	1	NA	NA	NA	-20346	NR_028577	100303738	Mm.479389	NR_028577		D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	0.000000	0.557214	
mm_123040.1	chr14	55585184	55585384	-	1	NA	NA	NA	-30	NM_033146	85308	Mm.40667	NM_033146	ENSMUSG00000022217	Emc9	1500005A01Rik|Cgi112|Fam158a	ER membrane protein complex subunit 9	protein-coding	0.040000	0.626866	
mm_131792.1	chr16	22898880	22899080	+	1	NA	NA	NA	-4594	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.040000	0.592040	
mm_23280.1	chr3	51661130	51661330	+	1	NA	NA	NA	51	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.005000	0.487562	-88(GCCTTTATAAAG,-,0.00),-86(CTTTATAAAGGA,+,0.00)
mm_35754.1	chr4	45811208	45811408	-	1	NA	NA	NA	12286	NM_028270	72535	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	0.005000	0.462687	
mm_167633.1	chr9	62846880	62847080	+	1	NA	NA	NA	8193	NM_001033175	76524	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.040000	0.532338	
mm_33749.1	chr4	134246856	134247056	+	1	NA	NA	NA	-1365	NM_024215	68040	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	0.010000	0.562189	
mm_28598.1	chr3	94501176	94501376	-	1	NA	NA	NA	18554	NR_110353	78784	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.035000	0.512438	
mm_61063.1	chr7	50599053	50599253	+	1	NA	NA	NA	-37	NM_172901	243996	Mm.443270	NM_172901	ENSMUSG00000084234	4933405O20Rik	-	RIKEN cDNA 4933405O20 gene	protein-coding	0.010000	0.402985	
mm_60208.1	chr7	43437512	43437712	+	1	NA	NA	NA	474	NM_024253	72310	Mm.34613	NM_024253	ENSMUSG00000004612	Nkg7	2500004F03Rik	natural killer cell group 7 sequence	protein-coding	0.010000	0.537313	
mm_6473.1	chr1	74068787	74068987	-	1	NA	NA	NA	55560	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.075000	0.721393	
mm_10658.1	chr2	20722370	20722570	+	1	NA	NA	NA	202957	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.025000	0.442786	
mm_159905.1	chr6	42405573	42405773	+	1	NA	NA	NA	144	NM_199159	387512	Mm.377919	NM_199159	ENSMUSG00000056203	Tas2r135	Tas2r35|mt2r38	taste receptor, type 2, member 135	protein-coding	0.015000	0.432836	
mm_66328.1	chr7	42692660	42692860	-	1	NA	NA	NA	-42	NM_001008427	434179	Mm.284947	NM_001008427	ENSMUSG00000069727	Zfp975	EG434179|Gm5595|mszf88	zinc finger protein 975	protein-coding	0.030000	0.562189	
mm_160834.1	chr11	48826036	48826236	+	1	NA	NA	NA	-2	NM_053166	94089	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.035000	0.547264	
mm_125462.1	chr15	52712291	52712491	+	1	NA	NA	NA	-54	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.105000	0.621891	
mm_124039.1	chr14	77036457	77036657	-	1	NA	NA	NA	60	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding	0.160000	0.796020	
mm_128887.1	chr15	73157116	73157316	-	1	NA	NA	NA	27731	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.020000	0.582090	
mm_127623.1	chr15	102462131	102462331	+	1	NA	NA	NA	3061	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.015000	0.601990	
mm_121228.1	chr14	103055550	103055750	+	1	NA	NA	NA	8638	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.005000	0.402985	
mm_70404.1	chr8	11325491	11325691	+	1	NA	NA	NA	-12765	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.010000	0.447761	
mm_146170.1	chr18	75297491	75297691	+	1	NA	NA	NA	-262	NR_045393	100503117	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.010000	0.597015	
mm_12386.1	chr2	69870286	69870486	+	1	NA	NA	NA	8824	NM_009278	20823	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	0.000000	0.353234	
mm_62278.1	chr7	99594518	99594718	+	1	NA	NA	NA	32485	NM_001195529	100503386	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	0.040000	0.582090	
mm_4866.1	chr1	187692111	187692311	+	1	NA	NA	NA	83205	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.000000	0.333333	
mm_57054.1	chr6	122472604	122472804	-	1	NA	NA	NA	13601	NM_027664	108653	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	0.025000	0.432836	
mm_102492.1	chr11	60239891	60240091	-	1	NA	NA	NA	-19364	NM_001313979	20787	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP-1a|SREBP1|SREBP1c|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.005000	0.398010	
mm_83857.1	chr9	54647111	54647311	-	1	NA	NA	NA	14674	NM_053178	94180	Mm.20592	NM_053178	ENSMUSG00000032281	Acsbg1	BG1|Bgm|E230019G03Rik|GR-LACS|Lpd|R75185	acyl-CoA synthetase bubblegum family member 1	protein-coding	0.030000	0.621891	
mm_65907.1	chr7	30193253	30193453	-	1	NA	NA	NA	1695	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.025000	0.552239	
mm_129348.1	chr15	77915291	77915491	-	1	NA	NA	NA	13603	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.015000	0.597015	89(TGCTTGAAAAGG,-,0.00)
mm_114506.1	chr13	70650101	70650301	+	1	NA	NA	NA	-12567	NM_144837	218333	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0.000000	0.562189	
mm_85681.1	chr9	107872617	107872817	-	1	NA	NA	NA	102	NM_011251	19654	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	0.110000	0.701493	
mm_126287.1	chr15	79247051	79247251	+	1	NA	NA	NA	7597	NM_020516	57274	Mm.441697	NM_020516	ENSMUSG00000032988	Slc16a8	Mct3	solute carrier family 16 (monocarboxylic acid transporters), member 8	protein-coding	0.015000	0.606965	-1(GCCTATATGGTC,+,0.00)
mm_55220.1	chr6	52230432	52230632	-	1	NA	NA	NA	-367	NR_029912	723820		NR_029912	ENSMUSG00000065443	Mir196b	Mirn196b|mir-196b	microRNA 196b	ncRNA	0.085000	0.676617	
mm_128556.1	chr15	55906711	55906911	-	1	NA	NA	NA	138	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding	0.075000	0.651741	
mm_162411.1	chr1	87127843	87128043	-	1	NA	NA	NA	2935	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.035000	0.621891	
mm_116461.1	chr13	43398084	43398284	-	1	NA	NA	NA	-192	NM_023554	70078	Mm.439927	NM_023554	ENSMUSG00000063200	Nol7	2210008F15Rik|5730556I21Rik|NOP27|RARG-1	nucleolar protein 7	protein-coding	0.040000	0.462687	
mm_46499.1	chr5	105133489	105133689	-	1	NA	NA	NA	5963	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.472637	
mm_78138.1	chr9	20889734	20889934	+	1	NA	NA	NA	1659	NM_145610	235036	Mm.2930	NM_145610	ENSMUSG00000004100	Ppan	A230087P06Rik|SSF1	peter pan homolog (Drosophila)	protein-coding	0.050000	0.582090	
mm_173149.1	chrX	24008412	24008612	+	1	NA	NA	NA	115749	NM_001034864	236749	Mm.296422	NM_001034864	ENSMUSG00000068113	Gm4907	EG236749	predicted gene 4907	protein-coding	0.025000	0.452736	
mm_91391.1	chr10	30655764	30655964	-	1	NA	NA	NA	3	NM_001111267	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.015000	0.512438	
mm_164843.1	chr18	43059467	43059667	-	1	NA	NA	NA	-96	NM_028392	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.030000	0.512438	
mm_67436.1	chr7	80385579	80385779	-	1	NA	NA	NA	2267	NM_010194	14159	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.020000	0.477612	
mm_65097.1	chr7	19272457	19272657	-	1	NA	NA	NA	-703	NM_001282022	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.060000	0.661692	
mm_53269.1	chr6	128399800	128400000	+	1	NA	NA	NA	134	NM_001162858	60345	Mm.269883	NM_021717	ENSMUSG00000001520	Nrip2	AW491344|NIX1	nuclear receptor interacting protein 2	protein-coding	0.030000	0.552239	
mm_121959.1	chr14	24617388	24617588	-	1	NA	NA	NA	126807	NM_011297	20088	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	0.030000	0.532338	
mm_164364.1	chr16	23060277	23060477	+	1	NA	NA	NA	2077	NM_001102412	16644	Mm.2160	NM_023125	ENSMUSG00000022875	Kng1	Kng	kininogen 1	protein-coding	0.005000	0.487562	
mm_25335.1	chr3	106573934	106574134	+	1	NA	NA	NA	-26232	NM_133869	99712	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.015000	0.323383	
mm_32588.1	chr4	111415077	111415277	+	1	NA	NA	NA	171	NM_026279	67621	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0.130000	0.731343	
mm_13105.1	chr2	91512928	91513128	+	1	NA	NA	NA	-33294	NM_001165989	75786	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0.010000	0.432836	
mm_9141.1	chr1	170867709	170867909	-	1	NA	NA	NA	-38	NM_001081304	226641	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.080000	0.572139	
mm_89241.1	chr10	87858175	87858375	+	1	NA	NA	NA	10	NM_001314010	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.000000	0.457711	
mm_120151.1	chr14	60634648	60634848	+	1	NA	NA	NA	43	NM_001033272	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.100000	0.721393	
mm_15809.1	chr2	164491933	164492133	+	1	NA	NA	NA	3922	NM_001048229	52840	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	0.010000	0.422886	
mm_143108.1	chr17	57149535	57149735	-	1	NA	NA	NA	142	NM_011617	21948	Mm.42228	NM_011617	ENSMUSG00000019489	Cd70	CD27LG|Cd27l|Tnfsf7|Tnlg8a	CD70 antigen	protein-coding	0.065000	0.646766	
mm_44837.1	chr5	34168930	34169130	-	1	NA	NA	NA	394	NM_146159	231123	Mm.319286	NM_146159	ENSMUSG00000079555	Haus3	D4S43h|D5H4S43|D5H4S43E	HAUS augmin-like complex, subunit 3	protein-coding	0.015000	0.393035	-97(GCTTTTAAAAAC,+,0.00),-97(GCTTTTAAAAAC,-,0.00)
mm_107357.1	chr12	32830171	32830371	+	1	NA	NA	NA	6155	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.010000	0.353234	42(GTACTTAAAAGG,-,0.00),84(GCTTTTATGTGA,+,0.00)
mm_144831.1	chr18	36365718	36365918	+	1	NA	NA	NA	17194	NM_001081365	66060	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.010000	0.482587	
mm_89278.1	chr10	87863691	87863891	+	1	NA	NA	NA	2680	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.005000	0.388060	
mm_106528.1	chr11	120572807	120573007	-	1	NA	NA	NA	29	NM_011032	18453	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.150000	0.731343	1(GGATTTATAAAG,-,0.00)
mm_9487.1	chr1	173729069	173729269	-	1	NA	NA	NA	12640	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.000000	0.492537	
mm_33868.1	chr4	135963627	135963827	+	1	NA	NA	NA	-1438	NM_178389	74246	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0.080000	0.656716	-7(AGGTCTTAAAGG,-,0.00),-6(GGTCTTAAAGGG,-,0.00),-4(TCTTAAAGGGGC,+,0.00)
mm_86559.1	chr10	11280933	11281133	+	1	NA	NA	NA	-297	NM_027968	71865	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0.075000	0.616915	
mm_71391.1	chr8	46162159	46162359	+	1	NA	NA	NA	-7297	NM_025747	66756	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430|mKIAA1430	cilia and flagella associated protein 97	protein-coding	0.005000	0.477612	
mm_23653.1	chr3	67582693	67582893	+	1	NA	NA	NA	25	NM_025813	66868	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.105000	0.676617	
mm_101079.1	chr11	11694177	11694377	-	1	NA	NA	NA	4100	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.005000	0.497512	
mm_95534.1	chr11	52253635	52253835	+	1	NA	NA	NA	21740	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.005000	0.557214	
mm_134545.1	chr16	19883767	19883967	-	1	NA	NA	NA	407	NR_027896	68162	Mm.35159	NR_015488		A930003A15Rik	AI853191	RIKEN cDNA A930003A15 gene	ncRNA	0.015000	0.512438	
mm_97135.1	chr11	75172375	75172575	+	1	NA	NA	NA	-913	NR_029794	387208		NR_029794	ENSMUSG00000065590	Mir212	Mirn212|mir-212|mmu-mir-212	microRNA 212	ncRNA	0.125000	0.656716	-59(CACTATAAATAG,-,0.00),-57(CTATAAATAGCC,+,0.00),53(GCCTATAAAAGC,-,0.00)
mm_26886.1	chr3	18125618	18125818	-	1	NA	NA	NA	71393	NM_021560	59058	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0.015000	0.378109	
mm_72759.1	chr8	85492582	85492782	+	1	NA	NA	NA	65	NM_173866	108682	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.080000	0.671642	
mm_87904.1	chr10	62231322	62231522	+	1	NA	NA	NA	-204	NM_197996	70423	Mm.416781	NM_197996	ENSMUSG00000037031	Tspan15	1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15	tetraspanin 15	protein-coding	0.060000	0.572139	
mm_133210.1	chr16	74828258	74828458	+	1	NA	NA	NA	-417446	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.005000	0.318408	
mm_153926.1	chr19	47320310	47320510	-	1	NA	NA	NA	-46821	NR_105961	102466782		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.035000	0.621891	
mm_81334.1	chr9	108517422	108517622	+	1	NA	NA	NA	435	NM_175143	69232	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik	glutamine-rich 1	protein-coding	0.170000	0.671642	
mm_147424.1	chr18	46212515	46212715	-	1	NA	NA	NA	-8	NM_178872	28105	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.070000	0.686567	
mm_10773.1	chr2	24277170	24277370	+	1	NA	NA	NA	-1	NM_019451	54450	Mm.29261	NM_019451	ENSMUSG00000026983	Il1f5	AI413231|Fil1delta|IL-36Ra|IL36RN|Il-1h3|Il1hy1	interleukin 1 family, member 5 (delta)	protein-coding	0.005000	0.507463	
mm_88054.1	chr10	67547730	67547930	+	1	NA	NA	NA	1125	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.045000	0.582090	
mm_100766.1	chr11	4594727	4594927	-	1	NA	NA	NA	-12	NM_028860	74302	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0.155000	0.766169	
mm_2254.1	chr1	91093430	91093630	+	1	NA	NA	NA	40086	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.010000	0.537313	
mm_32916.1	chr4	119136532	119136732	+	1	NA	NA	NA	27887	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.020000	0.417910	
mm_1051.1	chr1	58802516	58802716	+	1	NA	NA	NA	114	NM_001080126	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.005000	0.587065	85(GGGCTTTTAAGC,-,0.00),87(GCTTTTAAGCAG,+,0.00)
mm_104188.1	chr11	87814229	87814429	-	1	NA	NA	NA	11785	NM_080420	76113	Mm.41236	NM_080420	ENSMUSG00000009356	Lpo	5830499B15Rik	lactoperoxidase	protein-coding	0.030000	0.542289	
mm_124240.1	chr14	101477401	101477601	-	1	NA	NA	NA	131690	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.030000	0.532338	
mm_28371.1	chr3	89913007	89913207	-	1	NA	NA	NA	89	NM_001310676	16194	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.140000	0.741294	
mm_127134.1	chr15	98167829	98168029	+	1	NA	NA	NA	123	NM_177716	239650	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	0.100000	0.711443	
mm_159098.1	chr2	36376742	36376942	+	1	NA	NA	NA	64	NM_146947	258949	Mm.377765	NM_146947	ENSMUSG00000068950	Olfr338	MOR136-5	olfactory receptor 338	protein-coding	0.005000	0.517413	
mm_155.1	chr1	12692312	12692512	+	1	NA	NA	NA	-18	NM_001198565	240725	Mm.45563	NM_172294	ENSMUSG00000016918	Sulf1	AI467640|AW121680|mKIAA1077	sulfatase 1	protein-coding	0.030000	0.552239	
mm_81431.1	chr9	109094743	109094943	+	1	NA	NA	NA	-593	NM_172775	235611	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.030000	0.601990	
mm_168988.1	chr12	99645028	99645228	+	1	NA	NA	NA	-17154	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.120000	0.686567	
mm_37528.1	chr4	124850558	124850758	-	1	NA	NA	NA	72	NM_001142727	68920	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	0.150000	0.761194	-34(CCGCTTAAAGGG,-,0.00),-32(GCTTAAAGGGAC,+,0.00)
mm_155654.1	chrX	85870284	85870484	+	1	NA	NA	NA	111	NM_001163539	71398	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	0.005000	0.462687	
mm_78868.1	chr9	44407026	44407226	+	1	NA	NA	NA	422	NM_021789	60409	Mm.29814	NM_021789	ENSMUSG00000032112	Trappc4	1500017G03Rik|AI303617|HSPC172|PTD009|Sbd|Sbdn|Sdcbp2|TRS23	trafficking protein particle complex 4	protein-coding	0.090000	0.666667	
mm_78304.1	chr9	22643152	22643352	+	1	NA	NA	NA	167537	NM_178415	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.010000	0.562189	
mm_14091.1	chr2	125158829	125159029	+	1	NA	NA	NA	6329	NM_001079690	20495	Mm.3914	NM_011389	ENSMUSG00000027202	Slc12a1	AI788571|D630042G03Rik|Nkcc2|mBSC1|urehr3	solute carrier family 12, member 1	protein-coding	0.000000	0.452736	
mm_137247.1	chr17	24488654	24488854	+	1	NA	NA	NA	-29	NM_027937	268932	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	0.165000	0.810945	
mm_60389.1	chr7	44473988	44474188	+	1	NA	NA	NA	3741	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.442786	
mm_42945.1	chr5	122990678	122990878	+	1	NA	NA	NA	1424	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.030000	0.452736	
mm_146966.1	chr18	33462441	33462641	-	1	NA	NA	NA	1093	NM_001267717	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.010000	0.378109	
mm_35515.1	chr4	41124155	41124355	-	1	NA	NA	NA	84	NM_139236	230082	Mm.285797	NM_139236	ENSMUSG00000028430	Nol6	AA410091|Nrap	nucleolar protein family 6 (RNA-associated)	protein-coding	0.050000	0.636816	
mm_117605.1	chr13	90886621	90886821	-	1	NA	NA	NA	18634	NM_001145879	435376	Mm.292579	NM_001145879	ENSMUSG00000078958	Atp6ap1l	EG435376	ATPase, H+ transporting, lysosomal accessory protein 1-like	protein-coding	0.055000	0.472637	32(CGGTATATATGC,-,0.00)
mm_118454.1	chr14	8368161	8368361	+	1	NA	NA	NA	10502	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.010000	0.517413	
mm_117007.1	chr13	57908232	57908432	-	1	NA	NA	NA	0	NM_009262	20745	Mm.379020	NM_009262	ENSMUSG00000056222	Spock1	Spock|Ticn1|testican	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	protein-coding	0.135000	0.736318	
mm_123500.1	chr14	66213625	66213825	-	1	NA	NA	NA	-173	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.015000	0.502488	
mm_57775.1	chr6	129237910	129238110	-	1	NA	NA	NA	35	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.020000	0.537313	
mm_105156.1	chr11	101466130	101466330	-	1	NA	NA	NA	-31	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.095000	0.666667	-56(CCCTTTAAGTCC,+,0.00)
mm_95496.1	chr11	51763562	51763762	+	1	NA	NA	NA	-1	NM_025535	66397	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	0.080000	0.671642	
mm_35093.1	chr4	8642714	8642914	-	1	NA	NA	NA	-47592	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.000000	0.388060	
mm_93665.1	chr10	117698938	117699138	-	1	NA	NA	NA	11720	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.015000	0.447761	11(CTCTTTTTAAAG,-,0.00),13(CTTTTTAAAGAC,+,0.00)
mm_117864.1	chr13	98840294	98840494	-	1	NA	NA	NA	-24945	NM_172591	218503	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.010000	0.482587	
mm_17500.1	chr2	28840164	28840364	-	1	NA	NA	NA	96	NM_172977	269252	Mm.26043	NM_172977	ENSMUSG00000035666	Gtf3c4	5330400C03|AI426938|AU014771|AU017413|KAT12|TFIIIC90	general transcription factor IIIC, polypeptide 4	protein-coding	0.115000	0.721393	
mm_110544.1	chr12	55375921	55376121	-	1	NA	NA	NA	5326	NR_035430	100316807		NR_035430	ENSMUSG00000080645	Mir1198	Mirn1198|mmu-mir-1198	microRNA 1198	ncRNA	0.035000	0.482587	-32(TTCTATAAAAAC,-,0.00)
mm_94162.1	chr10	128746143	128746343	-	1	NA	NA	NA	-1636	NM_030100	78428	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	0.010000	0.422886	
mm_99591.1	chr11	104310235	104310435	+	1	NA	NA	NA	78899	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.065000	0.636816	
mm_85035.1	chr9	88482497	88482697	-	1	NA	NA	NA	-200	NM_001284328	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.155000	0.751244	
mm_51788.1	chr6	88200486	88200686	+	1	NA	NA	NA	1922	NM_008090	14461	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.050000	0.631841	
mm_24947.1	chr3	96618513	96618713	+	1	NA	NA	NA	11206	NR_003619	229613	Mm.445135	NM_175469	ENSMUSG00000045327	6330549D23Rik	-	RIKEN cDNA 6330549D23 gene	pseudo	0.020000	0.477612	
mm_57186.1	chr6	122848755	122848955	-	1	NA	NA	NA	7302	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.020000	0.462687	
mm_36606.1	chr4	88941945	88942145	-	1	NA	NA	NA	-3	NR_132735	106557447	Mm.484668	NR_132734		LOC106557447	-	uncharacterized LOC106557447	ncRNA	0.015000	0.447761	
mm_140989.1	chr17	24849906	24850106	-	1	NA	NA	NA	296	NM_023480	68636	Mm.347964	NM_023480	ENSMUSG00000045316	Fahd1	1110025H10Rik|AV002085	fumarylacetoacetate hydrolase domain containing 1	protein-coding	0.070000	0.572139	
mm_49031.1	chr6	4759694	4759894	+	1	NA	NA	NA	12488	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.000000	0.283582	
mm_28925.1	chr3	98858193	98858393	-	1	NA	NA	NA	1501	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.010000	0.422886	
mm_65736.1	chr7	28385662	28385862	-	1	NA	NA	NA	-6534	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.005000	0.447761	
mm_6518.1	chr1	74396942	74397142	-	1	NA	NA	NA	2732	NR_029743	387219		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.020000	0.497512	
mm_169684.1	chr15	72913220	72913420	+	1	NA	NA	NA	-102996	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.060000	0.601990	
mm_25312.1	chr3	106131843	106132043	+	1	NA	NA	NA	18561	NM_023186	81600	Mm.46418	NM_023186	ENSMUSG00000062778	Chia1	2200003E03Rik|AMCase|Chia|YNL	chitinase, acidic 1	protein-coding	0.010000	0.482587	
mm_110536.1	chr12	55080010	55080210	-	1	NA	NA	NA	0	NR_030764	72658	Mm.434380	NM_028314	ENSMUSG00000062198	2700097O09Rik	AW552125	RIKEN cDNA 2700097O09 gene	protein-coding	0.105000	0.646766	
mm_156396.1	chrX	139808160	139808360	+	1	NA	NA	NA	7452	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.010000	0.542289	
mm_82859.1	chr9	31913069	31913269	-	1	NA	NA	NA	116	NM_013800	12023	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.115000	0.756219	
mm_94832.1	chr11	23497638	23497838	+	1	NA	NA	NA	301	NM_001290655	268390	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	0.115000	0.731343	
mm_83281.1	chr9	43105748	43105948	-	1	NA	NA	NA	-130	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0.145000	0.796020	
mm_110162.1	chr12	26834777	26834977	-	1	NA	NA	NA	280118	NR_045052	100504347	Mm.130500	NR_045052		Gm20187	-	predicted gene, 20187	ncRNA	0.005000	0.572139	48(TCCTATAAAAGG,-,0.00)
mm_9625.1	chr1	176756800	176757000	-	1	NA	NA	NA	15523	NR_029775	723921		NR_029775	ENSMUSG00000065573	Mir350	Mirn350|mir-350|mmu-mir-350	microRNA 350	ncRNA	0.030000	0.472637	
mm_38743.1	chr4	145267506	145267706	-	1	NA	NA	NA	-20736	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.000000	0.427861	
mm_1214.1	chr1	62726888	62727088	+	1	NA	NA	NA	23671	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.010000	0.388060	
mm_17059.1	chr2	21205560	21205760	-	1	NA	NA	NA	-64	NM_001001297	208967	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	0.095000	0.641791	
mm_45283.1	chr5	64959046	64959246	-	1	NA	NA	NA	888	NM_011604	21899	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0.020000	0.452736	
mm_6313.1	chr1	71595639	71595839	-	1	NA	NA	NA	38583	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.015000	0.517413	
mm_39601.1	chr5	23787621	23787821	+	1	NA	NA	NA	10	NM_001310467	72772	Mm.133300	NM_177323	ENSMUSG00000028999	Rint1	1500019C06Rik|2810450M21Rik|Rint-1	RAD50 interactor 1	protein-coding	0.065000	0.626866	
mm_58512.1	chr7	4129175	4129375	+	1	NA	NA	NA	7651	NR_033548	100037396	Mm.447887	NR_033548	ENSMUSG00000085886	D030047H15Rik	Gm15924|OTTMUSG00000027889	RIKEN cDNA D030047H15 gene	ncRNA	0.005000	0.537313	
mm_70808.1	chr8	23035004	23035204	+	1	NA	NA	NA	5	NM_001277284	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.050000	0.641791	
mm_38510.1	chr4	141183935	141184135	-	1	NA	NA	NA	-29921	NM_001081174	76166	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723	REM2 and RAB-like small GTPase 1	protein-coding	0.005000	0.422886	
mm_153648.1	chr19	44294702	44294902	-	1	NA	NA	NA	1126	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.035000	0.537313	
mm_146135.1	chr18	74714670	74714870	+	1	NA	NA	NA	63685	NR_028560	100217466		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	0.005000	0.537313	
mm_98957.1	chr11	98545570	98545770	+	1	NA	NA	NA	361	NM_011771	22780	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.095000	0.592040	
mm_35258.1	chr4	19879938	19880138	-	1	NA	NA	NA	42528	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.025000	0.383085	-52(TTGTTTTTAAGG,-,0.00)
mm_105452.1	chr11	104503143	104503343	-	1	NA	NA	NA	47377	NM_001285990	217232	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	0.015000	0.363184	
mm_43974.1	chr5	146231075	146231275	+	1	NA	NA	NA	-500	NM_153599	264064	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.100000	0.671642	
mm_49545.1	chr6	30460885	30461085	+	1	NA	NA	NA	0	NR_131049	69337	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	0.040000	0.552239	
mm_57337.1	chr6	124745510	124745710	-	1	NA	NA	NA	-4531	NM_013535	14790	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.150000	0.726368	
mm_43356.1	chr5	135187254	135187454	+	1	NA	NA	NA	31	NM_011714	22385	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.100000	0.651741	
mm_152811.1	chr19	23075792	23075992	-	1	NA	NA	NA	-65334	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.015000	0.507463	
mm_158740.1	chrX	164229077	164229277	-	1	NA	NA	NA	29016	NM_009759	12169	Mm.504	NM_009759	ENSMUSG00000031377	Bmx	Etk|Etk/Bmx|Tyro8	BMX non-receptor tyrosine kinase	protein-coding	0.010000	0.373134	
mm_25076.1	chr3	99981184	99981384	+	1	NA	NA	NA	95867	NM_028892	74362	Mm.55847	NM_028892	ENSMUSG00000027867	Spag17	4931427F14Rik|PF6|Spag17-ps	sperm associated antigen 17	protein-coding	0.030000	0.402985	
mm_128154.1	chr15	32244526	32244726	-	1	NA	NA	NA	36	NR_038186	100616095	Mm.391938	NR_038186	ENSMUSG00000096956	Snhg18	0610007N19Rik|Snord123	small nucleolar RNA host gene 18	ncRNA	0.035000	0.626866	
mm_81579.1	chr9	110422367	110422567	+	1	NA	NA	NA	2659	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.005000	0.517413	
mm_163242.1	chr11	105589864	105590064	+	1	NA	NA	NA	-22	NM_181071	77097	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.185000	0.845771	
mm_160684.1	chr10	19712471	19712671	+	1	NA	NA	NA	-16	NM_172786	237313	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	0.080000	0.686567	
mm_150798.1	chr19	44303723	44303923	+	1	NA	NA	NA	652	NR_039574	100628619		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.030000	0.462687	
mm_17378.1	chr2	27019886	27020086	-	1	NA	NA	NA	8012	NM_172659	227659	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.010000	0.542289	
mm_155548.1	chrX	74328967	74329167	+	1	NA	NA	NA	1	NM_008883	18846	Mm.1685	NM_008883	ENSMUSG00000031398	Plxna3	PlexA3|Plxa3|Plxn3|Plxn4|SEX|mKIAA4078	plexin A3	protein-coding	0.095000	0.731343	-36(GGGTTTAAAAGG,-,0.00),-34(GTTTAAAAGGCC,+,0.00)
mm_3097.1	chr1	134424665	134424865	+	1	NA	NA	NA	9101	NM_001306069	72674	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.035000	0.537313	
mm_117134.1	chr13	60939332	60939532	-	1	NA	NA	NA	2503	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding	0.000000	0.407960	
mm_83915.1	chr9	56418005	56418205	-	1	NA	NA	NA	-55	NM_172924	244895	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	0.160000	0.731343	
mm_33848.1	chr4	135856558	135856758	+	1	NA	NA	NA	587	NM_010178	14105	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0.090000	0.616915	
mm_30845.1	chr4	24799795	24799995	+	1	NA	NA	NA	51191	NM_001163020	212390	Mm.412074	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	0.030000	0.577114	
mm_136773.1	chr17	10001507	10001707	+	1	NA	NA	NA	-225741	NR_045433	71092	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	0.000000	0.383085	-74(CCTTTTAAAATG,+,0.00)
mm_166673.1	chr6	95149769	95149969	+	1	NA	NA	NA	31989	NM_001008785	243574	Mm.333275	NM_001008785	ENSMUSG00000030031	Kbtbd8	AU040152|SSEC-51|SSEC51|Takrp|mKIAA1842	kelch repeat and BTB (POZ) domain containing 8	protein-coding	0.025000	0.412935	
mm_160561.1	chr9	53706104	53706304	-	1	NA	NA	NA	28	NM_175562	270160	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0.100000	0.696517	
mm_127044.1	chr15	96642378	96642578	+	1	NA	NA	NA	-135	NM_001166456	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.055000	0.656716	
mm_156988.1	chrX	7412664	7412864	-	1	NA	NA	NA	8283	NR_027925	68355	Mm.45111	NR_027924		2010204K13Rik	0610010M13Rik|Cip7	RIKEN cDNA 2010204K13 gene	ncRNA	0.015000	0.502488	
mm_168668.1	chr11	9150539	9150739	-	1	NA	NA	NA	32132	NM_001159402	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.075000	0.606965	
mm_146393.1	chr18	82901947	82902147	+	1	NA	NA	NA	-8832	NM_183033	329003	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.020000	0.512438	14(AGCTTTAAAAAA,-,0.00)
mm_131834.1	chr16	22960680	22960880	+	1	NA	NA	NA	9708	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.005000	0.427861	
mm_129312.1	chr15	77755174	77755374	-	1	NA	NA	NA	-45	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.000000	0.646766	
mm_38297.1	chr4	136896045	136896245	-	1	NA	NA	NA	2699	NM_007572	12259	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	0.050000	0.631841	
mm_62884.1	chr7	114768786	114768986	+	1	NA	NA	NA	23120	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	0.015000	0.522388	
mm_101859.1	chr11	48871166	48871366	-	1	NA	NA	NA	80	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding	0.035000	0.482587	
mm_128491.1	chr15	51790188	51790388	-	1	NA	NA	NA	75173	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.015000	0.517413	
mm_8204.1	chr1	138123506	138123706	-	1	NA	NA	NA	51520	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.363184	
mm_142401.1	chr17	45433596	45433796	-	1	NA	NA	NA	11	NM_152810	71702	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0.090000	0.582090	
mm_97704.1	chr11	80177933	80178133	+	1	NA	NA	NA	-5839	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.000000	0.447761	
mm_36867.1	chr4	107058826	107059026	-	1	NA	NA	NA	7940	NM_025500	56280	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0.025000	0.582090	
mm_75084.1	chr8	33916749	33916949	-	1	NA	NA	NA	13014	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.005000	0.422886	
mm_142342.1	chr17	43591408	43591608	-	1	NA	NA	NA	1	NR_045445	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.010000	0.487562	
mm_13304.1	chr2	102658134	102658334	+	1	NA	NA	NA	-449	NM_001077514	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.050000	0.537313	
mm_47201.1	chr5	120898100	120898300	-	1	NA	NA	NA	9325	NM_145211	246730	Mm.14301	NM_145211	ENSMUSG00000052776	Oas1a	L3	2'-5' oligoadenylate synthetase 1A	protein-coding	0.000000	0.457711	
mm_155938.1	chrX	103672577	103672777	+	1	NA	NA	NA	42091	NM_029158	75064	Mm.159414	NM_029158	ENSMUSG00000031330	Zcchc13	4930513O09Rik|Cnbp2	zinc finger, CCHC domain containing 13	protein-coding	0.035000	0.437811	
mm_51856.1	chr6	90465167	90465367	+	1	NA	NA	NA	2641	NM_023184	66277	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.015000	0.547264	
mm_130859.1	chr15	102188862	102189062	-	1	NA	NA	NA	81	NM_144942	246277	Mm.296382	NM_144942	ENSMUSG00000023044	Csad	Csd	cysteine sulfinic acid decarboxylase	protein-coding	0.030000	0.517413	
mm_159980.1	chr6	113472505	113472705	+	1	NA	NA	NA	1150	NM_134159	171095	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	0.020000	0.577114	
mm_120030.1	chr14	55853884	55854084	+	1	NA	NA	NA	-131	NM_001040072	277154	Mm.319347	NM_001040072	ENSMUSG00000075592	Nynrin	AA409373|C80530|mKIAA1305	NYN domain and retroviral integrase containing	protein-coding	0.085000	0.691542	
mm_124005.1	chr14	76010797	76010997	-	1	NA	NA	NA	-32	NM_026816	68705	Mm.20415	NM_026816	ENSMUSG00000067995	Gtf2f2	1110031C13Rik|AI326315	general transcription factor IIF, polypeptide 2	protein-coding	0.100000	0.597015	
mm_18732.1	chr2	72980337	72980537	-	1	NA	NA	NA	9	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.080000	0.601990	
mm_22325.1	chr2	180642533	180642733	-	1	NA	NA	NA	58	NM_178254	277353	Mm.473700	NM_178254	ENSMUSG00000038932	Tcfl5	AV260129|Figlb|Sosf1	transcription factor-like 5 (basic helix-loop-helix)	protein-coding	0.225000	0.855721	
mm_55482.1	chr6	68991235	68991435	-	1	NA	NA	NA	335839	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.343284	
mm_128301.1	chr15	37459310	37459510	-	1	NA	NA	NA	-28	NM_001170868	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.020000	0.517413	
mm_70744.1	chr8	19157786	19157986	+	1	NA	NA	NA	-1	NM_153115	78128	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	0.010000	0.432836	
mm_93198.1	chr10	94432973	94433173	-	1	NA	NA	NA	-81784	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.015000	0.507463	
mm_15107.1	chr2	153376230	153376430	+	1	NA	NA	NA	30191	NM_001039939	228790	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0.000000	0.283582	-6(TTTTTTAAAGAC,+,0.00)
mm_39993.1	chr5	32610210	32610410	+	1	NA	NA	NA	-861	NM_001205133	22612	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	0.010000	0.417910	
mm_9947.1	chr1	190978876	190979076	-	1	NA	NA	NA	22	NM_144879	226841	Mm.22856	NM_144879	ENSMUSG00000037568	Vash2	B130052G07Rik	vasohibin 2	protein-coding	0.115000	0.751244	
mm_61242.1	chr7	65693343	65693543	+	1	NA	NA	NA	26	NM_026795	68634	Mm.476828	NM_026795	ENSMUSG00000078681	Tm2d3	1110025I09Rik|5930422O05Rik|Blp2	TM2 domain containing 3	protein-coding	0.135000	0.746269	
mm_35757.1	chr4	45826708	45826908	-	1	NA	NA	NA	19	NM_018741	75426	Mm.3919	NM_018741	ENSMUSG00000035551	Igfbpl1	2810011G06Rik|2810453O06Rik|IGFBPL	insulin-like growth factor binding protein-like 1	protein-coding	0.145000	0.756219	
mm_47603.1	chr5	125058239	125058439	-	1	NA	NA	NA	54864	NM_028443	73121	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.080000	0.691542	
mm_80915.1	chr9	100719303	100719503	+	1	NA	NA	NA	75780	NM_009282	20842	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	0.015000	0.393035	
mm_111236.1	chr12	84772799	84772999	-	1	NA	NA	NA	213	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.070000	0.616915	
mm_17495.1	chr2	28621808	28622008	-	1	NA	NA	NA	74	NM_008114	14582	Mm.373385	NM_008114	ENSMUSG00000026815	Gfi1b	Gfi-1B	growth factor independent 1B	protein-coding	0.050000	0.597015	
mm_152995.1	chr19	29812863	29813063	-	1	NA	NA	NA	11	NM_177721	240614	Mm.125503	NM_177721	ENSMUSG00000074909	Ranbp6	C630001B19	RAN binding protein 6	protein-coding	0.105000	0.656716	
mm_77927.1	chr9	7353144	7353344	+	1	NA	NA	NA	5870	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.412935	
mm_36572.1	chr4	87944565	87944765	-	1	NA	NA	NA	88742	NM_027326	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.010000	0.328358	
mm_32037.1	chr4	95738317	95738517	+	1	NA	NA	NA	158996	NM_029347	75578	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.015000	0.417910	
mm_86066.1	chr9	114775287	114775487	-	1	NA	NA	NA	6606	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.005000	0.601990	
mm_43426.1	chr5	136057225	136057425	+	1	NA	NA	NA	58	NM_027158	69665	Mm.75713	NM_027158	ENSMUSG00000006143	Upk3bl	2310043J07Rik	uroplakin 3B-like	protein-coding	0.015000	0.626866	
mm_63536.1	chr7	127974300	127974500	+	1	NA	NA	NA	6921	NM_139149	233908	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0.020000	0.388060	
mm_23646.1	chr3	67472752	67472952	+	1	NA	NA	NA	-8945	NM_016753	17035	Mm.2632	NM_016753	ENSMUSG00000047557	Lxn	-	latexin	protein-coding	0.020000	0.343284	
mm_118578.1	chr14	19751184	19751384	+	1	NA	NA	NA	27	NM_008695	18074	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.075000	0.646766	
mm_11289.1	chr2	30066738	30066938	+	1	NA	NA	NA	364	NM_001204875	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.125000	0.726368	
mm_110214.1	chr12	28623221	28623421	-	1	NA	NA	NA	9	NM_001313978	71693	Mm.30724	NM_027866	ENSMUSG00000036655	Colec11	CL-K1	collectin sub-family member 11	protein-coding	0.015000	0.562189	
mm_130304.1	chr15	97019856	97020056	-	1	NA	NA	NA	36000	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.045000	0.462687	
mm_136628.1	chr17	5574918	5575118	+	1	NA	NA	NA	82418	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.005000	0.407960	
mm_61757.1	chr7	82771452	82771652	+	1	NA	NA	NA	-15908	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.040000	0.626866	
mm_106580.1	chr11	120729425	120729625	-	1	NA	NA	NA	-2241	NM_001347608	67880	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	0.045000	0.547264	
mm_19141.1	chr2	80447268	80447468	-	1	NA	NA	NA	28	NM_011356	20378	Mm.427436	NM_011356	ENSMUSG00000027004	Frzb	Frp|Sfrp3|frezzled|fritz|frzb-1	frizzled-related protein	protein-coding	0.070000	0.681592	
mm_127030.1	chr15	96288811	96289011	+	1	NA	NA	NA	1389	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.010000	0.482587	
mm_82462.1	chr9	15709251	15709451	-	1	NA	NA	NA	-418	NM_172289	234967	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.015000	0.492537	
mm_48272.1	chr5	137962935	137963135	-	1	NA	NA	NA	-76	NM_080450	118446	Mm.332771	NM_080450	ENSMUSG00000056966	Gjc3	Cx29|Gje1	gap junction protein, gamma 3	protein-coding	0.040000	0.567164	-6(TCTTTTATGCTG,+,0.00)
mm_50333.1	chr6	48448011	48448211	+	1	NA	NA	NA	-118	NM_173428	243369	Mm.25039	NM_173428	ENSMUSG00000029797	Sspo	C79529|Scospondin	SCO-spondin	protein-coding	0.005000	0.527363	
mm_69983.1	chr7	142380768	142380968	-	1	NA	NA	NA	7002	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.015000	0.477612	
mm_111264.1	chr12	85177197	85177397	-	1	NA	NA	NA	16	NM_008827	18654	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	0.060000	0.592040	
mm_151917.1	chr19	5799689	5799889	-	1	NA	NA	NA	2883	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.020000	0.457711	
mm_104670.1	chr11	97660277	97660477	-	1	NA	NA	NA	-3035	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.140000	0.776119	
mm_142792.1	chr17	50180539	50180739	-	1	NA	NA	NA	9858	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.000000	0.442786	
mm_22681.1	chr3	16183203	16183403	+	1	NA	NA	NA	120	NM_001145919	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.120000	0.726368	
mm_36403.1	chr4	77891599	77891799	-	1	NA	NA	NA	320196	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.283582	
mm_103866.1	chr11	83522006	83522206	-	1	NA	NA	NA	-7	NM_001045543	629303	Mm.390417	NM_001045543	ENSMUSG00000018925	Heatr9	Gm11435|OTTMUSG00000000990	HEAT repeat containing 9	protein-coding	0.005000	0.477612	
mm_90008.1	chr10	114737170	114737370	+	1	NA	NA	NA	64100	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	0.005000	0.527363	
mm_85040.1	chr9	88845523	88845723	-	1	NA	NA	NA	6459	NM_001177858	666731	Mm.446951	NM_001177858	ENSMUSG00000067399	Trim43c	EG666731|Trim43	tripartite motif-containing 43C	protein-coding	0.000000	0.238806	
mm_52804.1	chr6	121342410	121342610	+	1	NA	NA	NA	-566	NM_001347433	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.010000	0.567164	
mm_121694.1	chr14	13961533	13961733	-	1	NA	NA	NA	-320	NM_025435	66231	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.130000	0.731343	
mm_78179.1	chr9	21184266	21184466	+	1	NA	NA	NA	265	NM_001310750	18577	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.075000	0.721393	
mm_3532.1	chr1	150180576	150180776	+	1	NA	NA	NA	-15728	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.000000	0.253731	61(AAATTTAAAAGG,-,0.00)
mm_164611.1	chr17	31152770	31152970	+	1	NA	NA	NA	118	NR_110502	102631757	Mm.373036	NR_110502	ENSMUSG00000086010	LOC102631757	-	uncharacterized LOC102631757	ncRNA	0.020000	0.507463	
mm_103019.1	chr11	69734853	69735053	-	1	NA	NA	NA	23680	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.010000	0.542289	
mm_112862.1	chr13	20846669	20846869	+	1	NA	NA	NA	52656	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.462687	
mm_71509.1	chr8	46843020	46843220	+	1	NA	NA	NA	103375	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.015000	0.532338	
mm_164943.1	chr19	4037799	4037999	-	1	NA	NA	NA	13	NM_013541	14870	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	0.080000	0.651741	-58(CCCCTTATAAGG,-,0.00),-56(CCTTATAAGGCT,+,0.00)
mm_150029.1	chr19	29373697	29373897	+	1	NA	NA	NA	6359	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.040000	0.537313	
mm_13881.1	chr2	119972342	119972542	+	1	NA	NA	NA	-257	NM_011941	26390	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	0.090000	0.661692	-98(CCTTTACTAGGC,+,0.00)
mm_125087.1	chr15	27466572	27466772	+	1	NA	NA	NA	-5	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.165000	0.731343	
mm_12931.1	chr2	85048395	85048595	+	1	NA	NA	NA	-1965	NM_001081260	228140	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	0.080000	0.686567	
mm_39942.1	chr5	31821435	31821635	+	1	NA	NA	NA	123485	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.000000	0.333333	
mm_21405.1	chr2	158028332	158028532	-	1	NA	NA	NA	-65	NM_001291134	70470	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	0.110000	0.636816	
mm_34410.1	chr4	145245653	145245853	+	1	NA	NA	NA	1117	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.015000	0.557214	
mm_67918.1	chr7	99858789	99858989	-	1	NA	NA	NA	-6	NM_025668	66624	Mm.30043	NM_025668	ENSMUSG00000035227	Spcs2	5730406I15Rik|AA408713|mKIAA0102	signal peptidase complex subunit 2 homolog (S. cerevisiae)	protein-coding	0.085000	0.656716	
mm_95818.1	chr11	55204304	55204504	+	1	NA	NA	NA	64	NM_153139	215335	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0.095000	0.716418	
mm_133762.1	chr16	94526966	94527166	+	1	NA	NA	NA	-437	NM_007834	13185	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	Down syndrome critical region gene 3	protein-coding	0.130000	0.701493	
mm_84937.1	chr9	82971764	82971964	-	1	NA	NA	NA	3625	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.010000	0.248756	
mm_24367.1	chr3	90087995	90088195	+	1	NA	NA	NA	8574	NM_001293749	59069	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0.015000	0.432836	
mm_19941.1	chr2	116067070	116067270	-	1	NA	NA	NA	274	NM_001346047	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.095000	0.691542	
mm_162464.1	chr1	130831966	130832166	-	1	NA	NA	NA	5382	NM_011082	18703	Mm.276414	NM_011082	ENSMUSG00000026417	Pigr	-	polymeric immunoglobulin receptor	protein-coding	0.010000	0.432836	
mm_73682.1	chr8	111542919	111543119	+	1	NA	NA	NA	4676	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.010000	0.522388	70(AGGTTTATAAGG,-,0.00),72(GTTTATAAGGAC,+,0.00)
mm_149766.1	chr19	22959868	22960068	+	1	NA	NA	NA	-181258	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.025000	0.398010	
mm_117512.1	chr13	80884636	80884836	-	1	NA	NA	NA	1314	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.030000	0.472637	
mm_52383.1	chr6	113212735	113212935	+	1	NA	NA	NA	-17451	NM_177763	269788	Mm.37943	NM_177763	ENSMUSG00000042873	Lhfpl4	1190004M23Rik|AI604880|B230384L07|mKIAA4027	lipoma HMGIC fusion partner-like protein 4	protein-coding	0.005000	0.437811	
mm_169356.1	chr14	26638713	26638913	-	1	NA	NA	NA	616	NM_007479	11843	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.040000	0.582090	
mm_128868.1	chr15	72925507	72925707	-	1	NA	NA	NA	-115283	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.015000	0.522388	
mm_128490.1	chr15	51790159	51790359	-	1	NA	NA	NA	75202	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.030000	0.562189	
mm_13502.1	chr2	107319982	107320182	+	1	NA	NA	NA	29493	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding	0.005000	0.452736	
mm_6167.1	chr1	65063339	65063539	-	1	NA	NA	NA	1	NM_007776	12967	Mm.425031	NM_007776	ENSMUSG00000067299	Crygd	Aey4|Cryg-1|DGcry-1|Lop12	crystallin, gamma D	protein-coding	0.030000	0.631841	
mm_10039.1	chr1	192855630	192855830	-	1	NA	NA	NA	22	NM_198247	214791	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	0.140000	0.786070	
mm_11745.1	chr2	38351135	38351335	+	1	NA	NA	NA	-73	NM_010710	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.060000	0.641791	
mm_29792.1	chr3	127688445	127688645	-	1	NA	NA	NA	55400	NM_009718	11924	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	0.010000	0.492537	-5(GGGCTTAAAGAG,-,0.00),-3(GCTTAAAGAGCC,+,0.00)
mm_92193.1	chr10	68126169	68126369	-	1	NA	NA	NA	146671	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.000000	0.398010	-33(ATGTATTAAAGG,-,0.00),0(GGCCATTAAGGA,-,0.00)
mm_46307.1	chr5	100562773	100562973	-	1	NA	NA	NA	9332	NM_139198	231507	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.015000	0.512438	
mm_59289.1	chr7	24990397	24990597	+	1	NA	NA	NA	-2830	NR_106014	102465634		NR_106014	ENSMUSG00000099258	Mir7047	Gm27270|mmu-mir-7047	microRNA 7047	ncRNA	0.030000	0.572139	
mm_68872.1	chr7	126446855	126447055	-	1	NA	NA	NA	16118	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.015000	0.547264	
mm_69060.1	chr7	126897289	126897489	-	1	NA	NA	NA	889	NM_026827	68742	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0.010000	0.383085	
mm_156407.1	chrX	140456525	140456725	+	1	NA	NA	NA	22	NM_021463	19139	Mm.287178	NM_021463	ENSMUSG00000031432	Prps1	2310010D17Rik|C76571|C76678|PRS-I|Prps-1	phosphoribosyl pyrophosphate synthetase 1	protein-coding	0.085000	0.601990	
mm_169606.1	chr15	36771864	36772064	-	1	NA	NA	NA	18968	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.020000	0.298507	
mm_75919.1	chr8	71485868	71486068	-	1	NA	NA	NA	99	NM_001164679	382014	Mm.260360	NM_001164679	ENSMUSG00000034863	Ano8	BC053460|Tmem16h	anoctamin 8	protein-coding	0.110000	0.711443	
mm_702.1	chr1	40681271	40681471	+	1	NA	NA	NA	-341	NM_001033289	226999	Mm.256414	NM_001033289	ENSMUSG00000026062	Slc9a2	2210416H12Rik|4932415O19Rik|AV333884|NHE2	solute carrier family 9 (sodium/hydrogen exchanger), member 2	protein-coding	0.135000	0.736318	
mm_13568.1	chr2	112270719	112270919	+	1	NA	NA	NA	4505	NM_133649	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.005000	0.378109	-86(AACTATAAAAAG,-,0.00)
mm_19843.1	chr2	113216973	113217173	-	1	NA	NA	NA	10	NM_001319156	20192	Mm.436657	NM_177652	ENSMUSG00000057378	Ryr3	AI851294|C230090H21|RYR-3	ryanodine receptor 3	protein-coding	0.080000	0.691542	
mm_117568.1	chr13	85288929	85289129	-	1	NA	NA	NA	457	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.100000	0.736318	
mm_5058.1	chr1	194986432	194986632	+	1	NA	NA	NA	-9573	NR_033564	320400	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.000000	0.303483	
mm_138344.1	chr17	34914339	34914539	+	1	NA	NA	NA	-27	NM_023557	70129	Mm.183126	NM_023557	ENSMUSG00000007034	Slc44a4	2210409B01Rik|NG22	solute carrier family 44, member 4	protein-coding	0.050000	0.626866	
mm_31819.1	chr4	66841764	66841964	+	1	NA	NA	NA	14313	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.005000	0.298507	
mm_133954.1	chr16	4003689	4003889	-	1	NA	NA	NA	-2111	NM_177472	52864	Mm.29935	NM_177472	ENSMUSG00000039738	Slx4	AI256635|AI426760|Btbd12|D16Bwg1016e	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)	protein-coding	0.115000	0.656716	
mm_2337.1	chr1	92848500	92848700	+	1	NA	NA	NA	-1778	NR_029559	387167		NR_029559	ENSMUSG00000065470	Mir149	Mirn149|mir-149|mmu-mir-149	microRNA 149	ncRNA	0.070000	0.686567	
mm_7432.1	chr1	119899762	119899962	-	1	NA	NA	NA	13306	NM_175106	66343	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	0.010000	0.597015	
mm_19207.1	chr2	84531224	84531424	-	1	NA	NA	NA	-24451	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	0.010000	0.492537	
mm_12793.1	chr2	79635329	79635529	+	1	NA	NA	NA	4	NM_080558	70599	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0.105000	0.805970	
mm_5332.1	chr1	23909637	23909837	-	1	NA	NA	NA	-1	NM_001290683	98366	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	0.020000	0.407960	
mm_5069.1	chr1	195037016	195037216	+	1	NA	NA	NA	76	NR_029809	723963		NR_029809	ENSMUSG00000065412	Mir29b-2	Mirn29b-2|mir-29b-2	microRNA 29b-2	ncRNA	0.005000	0.427861	
mm_128809.1	chr15	66969846	66970046	-	1	NA	NA	NA	-305	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.105000	0.666667	
mm_34057.1	chr4	138311779	138311979	+	1	NA	NA	NA	4321	NR_105986	102466788		NR_105986	ENSMUSG00000099200	Mir7019	Gm27947|mmu-mir-7019	microRNA 7019	ncRNA	0.030000	0.567164	
mm_142898.1	chr17	51945625	51945825	-	1	NA	NA	NA	62998	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.000000	0.412935	
mm_165554.1	chr3	14504359	14504559	+	1	NA	NA	NA	23760	NM_080852	140918	Mm.215250	NM_080852	ENSMUSG00000039710	Slc7a12	Asc-2|XAT1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 12	protein-coding	0.000000	0.203980	
mm_44250.1	chr5	5380062	5380262	-	1	NA	NA	NA	89	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.145000	0.696517	
mm_171662.1	chr4	44704086	44704286	-	1	NA	NA	NA	1386	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0.105000	0.706468	
mm_87532.1	chr10	53344899	53345099	+	1	NA	NA	NA	7313	NM_001141927	18821	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0.000000	0.353234	
mm_134099.1	chr16	9994457	9994657	-	1	NA	NA	NA	-2024	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.045000	0.676617	
mm_170627.1	chr1	97423405	97423605	+	1	NA	NA	NA	238513	NM_133825	52392	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.035000	0.492537	
mm_163298.1	chr11	120349184	120349384	+	1	NA	NA	NA	606	NR_038126	66838	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0.060000	0.631841	
mm_36380.1	chr4	76877475	76877675	-	1	NA	NA	NA	1334320	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.333333	
mm_100604.1	chr11	121259919	121260119	+	1	NA	NA	NA	32	NM_001080932	68837	Mm.209750	NM_001080932	ENSMUSG00000039275	Foxk2	1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1	forkhead box K2	protein-coding	0.205000	0.815920	
mm_36539.1	chr4	86657278	86657478	-	1	NA	NA	NA	12681	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.035000	0.497512	
mm_91069.1	chr10	19007793	19007993	-	1	NA	NA	NA	4070	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.015000	0.497512	
mm_29186.1	chr3	106546067	106546267	-	1	NA	NA	NA	-1631	NM_001286986	67171	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0.000000	0.402985	-25(CCCCCTTTAAGG,-,0.00),-23(CCCTTTAAGGAA,+,0.00)
mm_74317.1	chr8	126758084	126758284	+	1	NA	NA	NA	-164748	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.020000	0.567164	51(CGATATTTAAGG,-,0.00)
mm_170444.1	chr18	82618798	82618998	-	1	NA	NA	NA	64390	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.025000	0.547264	
mm_61233.1	chr7	64511688	64511888	+	1	NA	NA	NA	9650	NM_001291167	11784	Mm.4657	NM_007461	ENSMUSG00000030519	Apba2	X11-like|X11L|XllL|mXllL	amyloid beta (A4) precursor protein-binding, family A, member 2	protein-coding	0.015000	0.348259	
mm_5642.1	chr1	40448339	40448539	-	1	NA	NA	NA	8810	NM_010743	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.010000	0.402985	-34(GTGTTTATAAAC,-,0.00)
mm_140056.1	chr17	74599122	74599322	+	1	NA	NA	NA	70927	NM_007566	12211	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.015000	0.383085	
mm_146825.1	chr18	21421891	21422091	-	1	NA	NA	NA	-121852	NM_001033445	381126	Mm.312276	NM_001033445	ENSMUSG00000042680	Garem1	C86169|Fam59a|Garem|Gm944|mKIAA4238	GRB2 associated regulator of MAPK1 subtype 1	protein-coding	0.035000	0.487562	
mm_23801.1	chr3	79877195	79877395	+	1	NA	NA	NA	-8635	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.020000	0.442786	
mm_130588.1	chr15	99633863	99634063	-	1	NA	NA	NA	17693	NM_001253808	26934	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	0.000000	0.278607	
mm_65499.1	chr7	25721623	25721823	-	1	NA	NA	NA	-2670	NM_028771	52132	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.015000	0.323383	
mm_126998.1	chr15	95790745	95790945	+	1	NA	NA	NA	2	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.110000	0.746269	
mm_55341.1	chr6	56568869	56569069	-	1	NA	NA	NA	135730	NM_025520	66373	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.065000	0.706468	
mm_92327.1	chr10	75773292	75773492	-	1	NA	NA	NA	-18	NM_010027	13202	Mm.298947	NM_010027	ENSMUSG00000001666	Ddt	C78655	D-dopachrome tautomerase	protein-coding	0.055000	0.626866	
mm_148084.1	chr18	73572253	73572453	-	1	NA	NA	NA	-352	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.130000	0.661692	
mm_54002.1	chr6	7692809	7693009	-	1	NA	NA	NA	273	NM_012055	27053	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0.100000	0.626866	
mm_76247.1	chr8	83594319	83594519	-	1	NA	NA	NA	72	NM_027179	106529	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	0.065000	0.656716	
mm_2597.1	chr1	119648285	119648485	+	1	NA	NA	NA	615	NM_001113416	226352	Mm.253156	NM_145506	ENSMUSG00000026383	Epb41l5	1700030C16Rik|AL022914|BE37|E230025E14Rik|Epb4.1l5|Lulu1|NBL5	erythrocyte membrane protein band 4.1 like 5	protein-coding	0.095000	0.616915	
mm_42822.1	chr5	122093454	122093654	+	1	NA	NA	NA	-7426	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.035000	0.592040	
mm_7696.1	chr1	129616119	129616319	-	1	NA	NA	NA	342915	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	0.005000	0.447761	
mm_95362.1	chr11	48901227	48901427	+	1	NA	NA	NA	825	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.000000	0.447761	
mm_31645.1	chr4	59581606	59581806	+	1	NA	NA	NA	143	NM_024255	72479	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0.070000	0.636816	
mm_69368.1	chr7	130624795	130624995	-	1	NA	NA	NA	47411	NM_206856	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.040000	0.601990	
mm_40696.1	chr5	65850964	65851164	+	1	NA	NA	NA	-12505	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.035000	0.502488	
mm_133601.1	chr16	91475787	91475987	+	1	NA	NA	NA	-9328	NM_010508	15975	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	CD118|Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.020000	0.512438	
mm_24526.1	chr3	93197177	93197377	+	1	NA	NA	NA	4	NM_001013804	229574	Mm.10755	NM_001013804		Flg2	EG229574	filaggrin family member 2	protein-coding	0.010000	0.467662	-33(AGCTATATAAGG,-,0.00)
mm_57602.1	chr6	127796235	127796435	-	1	NA	NA	NA	-8192	NR_106092	102466996		NR_106092	ENSMUSG00000104804	Mir7233	mmu-mir-7233	microRNA 7233	ncRNA	0.010000	0.517413	
mm_19203.1	chr2	84501217	84501417	-	1	NA	NA	NA	5556	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	0.010000	0.462687	65(CCTTTTAAATTA,+,0.00)
mm_130969.1	chr15	103323142	103323342	-	1	NA	NA	NA	-12804	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.075000	0.681592	
mm_85466.1	chr9	105521151	105521351	-	1	NA	NA	NA	6	NM_001253831	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.030000	0.557214	
mm_150066.1	chr19	29386269	29386469	+	1	NA	NA	NA	18931	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.338308	
mm_57460.1	chr6	125186582	125186782	-	1	NA	NA	NA	-251	NR_028517	100217413		NR_028517		Scarna10	MBI-52	small Cajal body-specific RNA 10	ncRNA	0.010000	0.477612	
mm_46914.1	chr5	114380413	114380613	-	1	NA	NA	NA	-8	NM_026145	330171	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	0.085000	0.681592	-71(CGCTTTAAGAAG,-,0.00)
mm_145738.1	chr18	64265254	64265454	+	1	NA	NA	NA	10995	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.085000	0.676617	
mm_164283.1	chr15	102928077	102928277	+	1	NA	NA	NA	7046	NM_010464	15422	Mm.207062	NM_010464	ENSMUSG00000001655	Hoxc13	-	homeobox C13	protein-coding	0.005000	0.427861	
mm_20372.1	chr2	128429102	128429302	-	1	NA	NA	NA	149	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.015000	0.437811	
mm_84920.1	chr9	80265312	80265512	-	1	NA	NA	NA	100378	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.015000	0.442786	
mm_93650.1	chr10	117376838	117377038	-	1	NA	NA	NA	35	NM_001013391	432508	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.120000	0.716418	
mm_118577.1	chr14	19750865	19751065	+	1	NA	NA	NA	-292	NM_008695	18074	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.065000	0.656716	
mm_5216.1	chr1	13660650	13660850	-	1	NA	NA	NA	-241	NM_145381	212442	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	0.035000	0.547264	
mm_80136.1	chr9	70679035	70679235	+	1	NA	NA	NA	153	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.115000	0.701493	
mm_25315.1	chr3	106482352	106482552	+	1	NA	NA	NA	2	NM_001278941	72121	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.070000	0.681592	
mm_59134.1	chr7	23974590	23974790	+	1	NA	NA	NA	-9271	NM_207546	404289	Mm.279185	NM_207546	ENSMUSG00000097425	Vmn1r181	V1rd20	vomeronasal 1 receptor 181	protein-coding	0.005000	0.517413	
mm_151514.1	chr19	58736937	58737137	+	1	NA	NA	NA	8150	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.015000	0.517413	
mm_105277.1	chr11	102407806	102408006	-	1	NA	NA	NA	-389	NM_026542	68066	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.065000	0.547264	
mm_45929.1	chr5	89445280	89445480	-	1	NA	NA	NA	12518	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.010000	0.432836	-42(TCCTATATAGCA,+,0.00)
mm_137869.1	chr17	31386128	31386328	+	1	NA	NA	NA	-6	NM_008804	18585	Mm.10812	NM_008804	ENSMUSG00000041119	Pde9a	PDE9A1	phosphodiesterase 9A	protein-coding	0.110000	0.751244	
mm_5249.1	chr1	16579027	16579227	-	1	NA	NA	NA	40211	NM_025773	66799	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0.000000	0.343284	60(CCCTTTATATCC,+,0.00)
mm_93212.1	chr10	94944749	94944949	-	1	NA	NA	NA	-271	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.155000	0.781095	
mm_92057.1	chr10	62507651	62507851	-	1	NA	NA	NA	4	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.030000	0.527363	-38(CTTTCTAAAAGG,-,0.00)
mm_164857.1	chr18	52056162	52056362	-	1	NA	NA	NA	67284	NR_029788	723830		NR_029788	ENSMUSG00000065494	Mir28a	Mir28|Mirn28|mmu-mir-28|mmu-mir-28a	microRNA 28a	ncRNA	0.000000	0.427861	
mm_62171.1	chr7	97332545	97332745	+	1	NA	NA	NA	322	NM_001039039	622320	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	0.045000	0.621891	
mm_112712.1	chr13	19184854	19185054	+	1	NA	NA	NA	210859	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.517413	
mm_53308.1	chr6	129181252	129181452	+	1	NA	NA	NA	737	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.005000	0.417910	
mm_43365.1	chr5	135404800	135405000	+	1	NA	NA	NA	-10354	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.050000	0.522388	
mm_12086.1	chr2	60210552	60210752	+	1	NA	NA	NA	716	NM_020575	57438	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.045000	0.472637	-24(GTTTAAAGAGCG,+,0.00)
mm_104848.1	chr11	99243997	99244197	-	1	NA	NA	NA	-30	NM_172946	268481	Mm.133193	NM_172946	ENSMUSG00000035849	Krt222	6330509G02Rik	keratin 222	protein-coding	0.035000	0.587065	-58(GCTTCTTTAAGG,-,0.00)
mm_156451.1	chrX	142720298	142720498	+	1	NA	NA	NA	-18602	NR_030523	723976		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	0.005000	0.412935	
mm_87880.1	chr10	61680232	61680432	+	1	NA	NA	NA	11	NM_009120	20224	Mm.391794	NM_009120	ENSMUSG00000020088	Sar1a	1600019H17Rik|Sara|Sara1	secretion associated Ras related GTPase 1A	protein-coding	0.135000	0.756219	
mm_161218.1	chr13	67306361	67306561	-	1	NA	NA	NA	-49	NM_001003666	431706	Mm.439456	NM_001003666	ENSMUSG00000055341	Zfp457	Rslcan-6	zinc finger protein 457	protein-coding	0.030000	0.462687	
mm_85199.1	chr9	96732178	96732378	-	1	NA	NA	NA	-603	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.025000	0.487562	20(CCGCATTTAAGG,-,0.00),22(GCATTTAAGGTG,+,0.00)
mm_31059.1	chr4	41275625	41275825	+	1	NA	NA	NA	-590	NM_026872	68926	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0.060000	0.601990	
mm_97089.1	chr11	73138361	73138561	+	1	NA	NA	NA	-167	NM_010353	14841	Mm.42045	NM_010353	ENSMUSG00000050107	Gsg2	Haspin	germ cell associated 2, haspin	protein-coding	0.045000	0.616915	
mm_83526.1	chr9	46229998	46230198	-	1	NA	NA	NA	1468	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.085000	0.641791	
mm_151405.1	chr19	56548374	56548574	+	1	NA	NA	NA	213	NM_025811	66866	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.090000	0.641791	
mm_68602.1	chr7	116237711	116237911	-	1	NA	NA	NA	-35	NM_001305186	233765	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.080000	0.716418	
mm_121663.1	chr14	12345634	12345834	-	1	NA	NA	NA	131	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	0.075000	0.572139	
mm_22323.1	chr2	180642226	180642426	-	1	NA	NA	NA	365	NM_178254	277353	Mm.473700	NM_178254	ENSMUSG00000038932	Tcfl5	AV260129|Figlb|Sosf1	transcription factor-like 5 (basic helix-loop-helix)	protein-coding	0.170000	0.791045	
mm_90001.1	chr10	112270162	112270362	+	1	NA	NA	NA	-861	NM_001025581	268345	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0.105000	0.726368	
mm_113105.1	chr13	24397331	24397531	+	1	NA	NA	NA	-17691	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.000000	0.422886	
mm_171656.1	chr4	4242157	4242357	-	1	NA	NA	NA	-103812	NM_001002927	18619	Mm.475097	NM_001002927	ENSMUSG00000045573	Penk	AI326464|ENK|PPA|Penk1	preproenkephalin	protein-coding	0.030000	0.492537	
mm_90048.1	chr10	116018333	116018533	+	1	NA	NA	NA	70	NM_011217	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	0.045000	0.656716	
mm_32160.1	chr4	99978421	99978621	+	1	NA	NA	NA	49070	NM_028132	72157	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.030000	0.398010	
mm_22534.1	chr3	8545522	8545722	+	1	NA	NA	NA	36095	NM_025285	20257	Mm.29580	NM_025285	ENSMUSG00000027500	Stmn2	AI159727|SCG10|Scgn10|Stmb2	stathmin-like 2	protein-coding	0.015000	0.507463	
mm_270.1	chr1	21218496	21218696	+	1	NA	NA	NA	21	NM_029398	75712	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	0.040000	0.611940	
mm_99518.1	chr11	103133218	103133418	+	1	NA	NA	NA	-21	NM_001130516	71059	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0.030000	0.611940	
mm_125339.1	chr15	39006219	39006419	+	1	NA	NA	NA	-14	NM_008056	14368	Mm.4769	NM_008056	ENSMUSG00000022297	Fzd6	Fz6	frizzled class receptor 6	protein-coding	0.155000	0.800995	
mm_152232.1	chr19	8708998	8709198	-	1	NA	NA	NA	4799	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.025000	0.557214	
mm_88090.1	chr10	68723542	68723742	+	1	NA	NA	NA	-104	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.030000	0.616915	
mm_7053.1	chr1	87128191	87128391	-	1	NA	NA	NA	3283	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.015000	0.532338	
mm_155879.1	chrX	101449019	101449219	+	1	NA	NA	NA	10	NM_013712	26549	Mm.46232	NM_013712	ENSMUSG00000031312	Itgb1bp2	Chordc3	integrin beta 1 binding protein 2	protein-coding	0.005000	0.512438	
mm_45979.1	chr5	90474528	90474728	-	1	NA	NA	NA	13758	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.020000	0.497512	
mm_38126.1	chr4	134563337	134563537	-	1	NA	NA	NA	4414	NR_105829	102465216		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.030000	0.512438	
mm_65927.1	chr7	30280280	30280480	-	1	NA	NA	NA	41	NM_146186	233064	Mm.271677	NM_146186	ENSMUSG00000037020	Wdr62	2310038K02Rik	WD repeat domain 62	protein-coding	0.100000	0.616915	
mm_53336.1	chr6	129236908	129237108	+	1	NA	NA	NA	1037	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.000000	0.447761	
mm_111262.1	chr12	85151137	85151337	-	1	NA	NA	NA	27	NM_146244	238323	Mm.44829	NM_146244	ENSMUSG00000019235	Rps6kl1	A830084F09Rik|AW046440	ribosomal protein S6 kinase-like 1	protein-coding	0.055000	0.621891	
mm_131972.1	chr16	24934048	24934248	+	1	NA	NA	NA	-125491	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.005000	0.353234	37(TACTTTAAAAGT,-,0.00)
mm_3854.1	chr1	160941038	160941238	+	1	NA	NA	NA	34727	NM_001024952	381305	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	0.005000	0.368159	-64(GACCTTAAAAAA,-,0.00)
mm_14899.1	chr2	149830801	149831001	+	1	NA	NA	NA	118	NM_001085521	433485	Mm.330649	NM_001085521	ENSMUSG00000074736	Syndig1	AW123113|DSPC2|Gm14134|H2C20orf39|OTTMUSG00000015750|Tmem90b	synapse differentiation inducing 1	protein-coding	0.135000	0.766169	
mm_12392.1	chr2	69930432	69930632	+	1	NA	NA	NA	33286	NM_177783	68795	Mm.314576	NM_177783	ENSMUSG00000044308	Ubr3	1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding	0.005000	0.442786	
mm_21011.1	chr2	152396094	152396294	-	1	NA	NA	NA	1852	NM_011438	20667	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.020000	0.582090	
mm_138713.1	chr17	36143078	36143278	+	1	NA	NA	NA	-1840	NR_033517	675325	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	0.000000	0.597015	
mm_121507.1	chr14	121949963	121950163	+	1	NA	NA	NA	15130	NM_183031	321019	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.005000	0.527363	
mm_113551.1	chr13	38149389	38149589	+	1	NA	NA	NA	-1805	NM_023842	109620	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding	0.010000	0.467662	
mm_162269.1	chr1	10232836	10233036	-	1	NA	NA	NA	-266	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.135000	0.736318	
mm_60112.1	chr7	35449061	35449261	+	1	NA	NA	NA	-18	NM_021291	30962	Mm.45874	NM_021291	ENSMUSG00000030492	Slc7a9	CSNU3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	protein-coding	0.015000	0.542289	
mm_106042.1	chr11	116079269	116079469	-	1	NA	NA	NA	-1408	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.030000	0.601990	
mm_33588.1	chr4	132563401	132563601	+	1	NA	NA	NA	-566	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.005000	0.547264	
mm_145424.1	chr18	58571924	58572124	+	1	NA	NA	NA	15784	NM_001081072	225579	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0.010000	0.388060	
mm_137487.1	chr17	26941342	26941542	+	1	NA	NA	NA	-10	NM_001281491	240057	Mm.328888	NM_001281491	ENSMUSG00000067629	Syngap1	Gm1963|Syngap	synaptic Ras GTPase activating protein 1 homolog (rat)	protein-coding	0.035000	0.641791	
mm_104378.1	chr11	94451749	94451949	-	1	NA	NA	NA	22349	NM_001177888	12291	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0.000000	0.542289	
mm_82080.1	chr9	122999376	122999576	+	1	NA	NA	NA	-21850	NM_025339	66079	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	0.010000	0.402985	
mm_63777.1	chr7	131560314	131560514	+	1	NA	NA	NA	44	NM_009774	12237	Mm.927	NM_009774	ENSMUSG00000066979	Bub3	AU019800|AU021329|AU043350|AW146323|C78067	BUB3 mitotic checkpoint protein	protein-coding	0.110000	0.646766	
mm_63588.1	chr7	128134663	128134863	+	1	NA	NA	NA	5195	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.010000	0.527363	
mm_61322.1	chr7	68189818	68190018	+	1	NA	NA	NA	74315	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.030000	0.547264	
mm_101653.1	chr11	36631271	36631471	-	1	NA	NA	NA	312870	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.010000	0.412935	
mm_120292.1	chr14	63136351	63136551	+	1	NA	NA	NA	13989	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.030000	0.542289	
mm_77803.1	chr9	3034103	3034303	+	1	NA	NA	NA	4540	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.353234	
mm_156543.1	chrX	151169581	151169781	+	1	NA	NA	NA	-28397	NM_001271679	279561	Mm.441474	NM_001271678	ENSMUSG00000041245	Wnk3	Prkwnk3|Wnk3-ps	WNK lysine deficient protein kinase 3	protein-coding	0.100000	0.641791	
mm_27153.1	chr3	33082884	33083084	-	1	NA	NA	NA	76	NM_021483	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.015000	0.577114	
mm_37935.1	chr4	132922496	132922696	-	1	NA	NA	NA	-45	NM_001163792	230789	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0.155000	0.761194	
mm_152176.1	chr19	7382860	7383060	-	1	NA	NA	NA	-43	NR_045703	654802	Mm.414924	NR_045703		1700105P06Rik	-	RIKEN cDNA 1700105P06 gene	ncRNA	0.140000	0.771144	-67(CTCCATAAAAGG,-,0.00)
mm_90363.1	chr10	127165934	127166134	+	1	NA	NA	NA	203	NM_001244618	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.075000	0.661692	
mm_109383.1	chr12	109721814	109722014	+	1	NA	NA	NA	-804	NR_030270	723856		NR_030270	ENSMUSG00000076006	Mir376c	Mirn376c|mir-376c	microRNA 376c	ncRNA	0.015000	0.378109	
mm_53806.1	chr6	146888435	146888635	+	1	NA	NA	NA	41	NM_026221	67533	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	0.135000	0.805970	
mm_133516.1	chr16	90816421	90816621	+	1	NA	NA	NA	-6108	NM_029497	207932	Mm.328688	NM_029497	ENSMUSG00000039929	Urb1	4921511H13Rik|5730405K23Rik|AA670781|AI645590|mKIAA0539	URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	protein-coding	0.005000	0.517413	
mm_170260.1	chr18	14732710	14732910	+	1	NA	NA	NA	26659	NM_001163609	73677	Mm.87277	NM_001163609	ENSMUSG00000036743	Psma8	2410072D24Rik	proteasome (prosome, macropain) subunit, alpha type, 8	protein-coding	0.035000	0.517413	-87(GCTTATAGACTG,+,0.00)
mm_93018.1	chr10	87809378	87809578	-	1	NA	NA	NA	-48787	NM_001314010	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.015000	0.527363	
mm_69157.1	chr7	127144518	127144718	-	1	NA	NA	NA	-6795	NM_001037810	20737	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	0.020000	0.497512	
mm_111796.1	chr12	104865094	104865294	-	1	NA	NA	NA	-118	NR_104435	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.095000	0.671642	
mm_88782.1	chr10	80602809	80603009	+	1	NA	NA	NA	27	NM_019575	56214	Mm.273170	NM_019575	ENSMUSG00000078441	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	0.120000	0.676617	
mm_69504.1	chr7	134266103	134266303	-	1	NA	NA	NA	-41106	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.010000	0.398010	
mm_38136.1	chr4	134704165	134704365	-	1	NA	NA	NA	25	NM_207237	230815	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.150000	0.791045	
mm_84939.1	chr9	82974870	82975070	-	1	NA	NA	NA	519	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.185000	0.830846	
mm_105420.1	chr11	103696962	103697162	-	1	NA	NA	NA	648	NM_019650	56494	Mm.195451	NM_019650	ENSMUSG00000020946	Gosr2	2310032N09Rik|C76855|Gs27|SNARE|membrin	golgi SNAP receptor complex member 2	protein-coding	0.005000	0.338308	
mm_14304.1	chr2	129100979	129101179	+	1	NA	NA	NA	83	NM_009086	20017	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	0.075000	0.646766	
mm_24973.1	chr3	96757837	96758037	+	1	NA	NA	NA	30326	NM_026406	67845	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.020000	0.507463	
mm_26169.1	chr3	138282695	138282895	+	1	NA	NA	NA	5150	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.025000	0.517413	
mm_112735.1	chr13	19256786	19256986	+	1	NA	NA	NA	138927	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.308458	
mm_109771.1	chr12	118847208	118847408	+	1	NA	NA	NA	979	NM_177082	320145	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.020000	0.437811	
mm_26131.1	chr3	137868025	137868225	+	1	NA	NA	NA	450	NM_001033155	70604	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	0.115000	0.776119	
mm_44269.1	chr5	5664125	5664325	-	1	NA	NA	NA	7	NM_172447	207686	Mm.319007	NM_172447	ENSMUSG00000040473	Cfap69	4921525K03|A330021E22Rik|AI427898	cilia and flagella associated protein 69	protein-coding	0.070000	0.621891	
mm_63878.1	chr7	136894519	136894719	+	1	NA	NA	NA	8	NM_008598	17314	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding	0.055000	0.646766	
mm_106361.1	chr11	118393837	118394037	-	1	NA	NA	NA	7994	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.035000	0.567164	
mm_114187.1	chr13	55714533	55714733	+	1	NA	NA	NA	-17	NM_175150	69672	Mm.294457	NM_175150	ENSMUSG00000021497	Txndc15	2310047H23Rik|AI854086|C5orf14|UNQ335	thioredoxin domain containing 15	protein-coding	0.100000	0.676617	
mm_50731.1	chr6	52492405	52492605	+	1	NA	NA	NA	54	NR_046049	74304	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0.025000	0.502488	
mm_99335.1	chr11	101468070	101468270	+	1	NA	NA	NA	-168	NM_009708	11858	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn	Rho family GTPase 2	protein-coding	0.130000	0.835821	
mm_5149.1	chr1	9798891	9799091	-	1	NA	NA	NA	861	NM_177547	170755	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.010000	0.393035	
mm_63678.1	chr7	130546898	130547098	+	1	NA	NA	NA	383	NM_001162855	67872	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0.095000	0.681592	
mm_68909.1	chr7	126457087	126457287	-	1	NA	NA	NA	5886	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.015000	0.532338	
mm_59092.1	chr7	19696442	19696642	+	1	NA	NA	NA	1856	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.050000	0.616915	
mm_147567.1	chr18	54990524	54990724	-	1	NA	NA	NA	-444	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.045000	0.572139	-97(CCTTTTAGACGC,+,0.00)
mm_15613.1	chr2	160797071	160797271	+	1	NA	NA	NA	65861	NM_021280	18803	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.005000	0.527363	
mm_78830.1	chr9	44134130	44134330	+	1	NA	NA	NA	-428	NM_023061	84004	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.030000	0.606965	
mm_28175.1	chr3	88000137	88000337	-	1	NA	NA	NA	119	NM_007529	12032	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0.140000	0.771144	
mm_28147.1	chr3	87512481	87512681	-	1	NA	NA	NA	-12997	NM_001083318	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.020000	0.527363	
mm_113829.1	chr13	47066337	47066537	+	1	NA	NA	NA	22938	NM_172262	218214	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	0.010000	0.512438	-54(CTCCATTTAAGG,-,0.00)
mm_88394.1	chr10	76562162	76562362	+	1	NA	NA	NA	-10	NM_029661	76573	Mm.45611	NM_029661	ENSMUSG00000009115	Spatc1l	1700022B01Rik|1700027D21Rik|AA062323	spermatogenesis and centriole associated 1 like	protein-coding	0.035000	0.577114	-41(GCCTCTTTAAGG,-,0.00)
mm_103777.1	chr11	82763780	82763980	-	1	NA	NA	NA	441	NM_009839	12467	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0.055000	0.542289	
mm_88222.1	chr10	70365275	70365475	+	1	NA	NA	NA	-75293	NM_001143777	71721	Mm.477813	NM_024244	ENSMUSG00000043259	Fam13c	1200015N20Rik|C030038O19Rik|mKIAA1796	family with sequence similarity 13, member C	protein-coding	0.020000	0.447761	
mm_4548.1	chr1	177258702	177258902	+	1	NA	NA	NA	-10035	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.135000	0.751244	
mm_166550.1	chr6	41215992	41216192	+	1	NA	NA	NA	-86180	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.010000	0.492537	
mm_15422.1	chr2	156863081	156863281	+	1	NA	NA	NA	59	NM_026124	67388	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	0.150000	0.781095	
mm_9435.1	chr1	172522577	172522777	-	1	NA	NA	NA	1547	NM_027972	71870	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	0.025000	0.512438	
mm_101491.1	chr11	31671772	31671972	-	1	NA	NA	NA	-10	NM_001024919	69556	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.115000	0.666667	-74(GGCTATAAGAAC,-,0.00)
mm_49570.1	chr6	30640462	30640662	+	1	NA	NA	NA	1344	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.045000	0.532338	
mm_67806.1	chr7	98117661	98117861	-	1	NA	NA	NA	1732	NM_001256081	17921	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.020000	0.601990	
mm_105905.1	chr11	114983031	114983231	-	1	NA	NA	NA	6755	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.005000	0.462687	
mm_18833.1	chr2	74716030	74716230	-	1	NA	NA	NA	0	NR_027899	73429	Mm.443313	NR_027899		Hoxd3os1	1700064D17Rik|1700109F18Rik	homeobox D3, opposite strand 1	ncRNA	0.045000	0.582090	
mm_92183.1	chr10	68026615	68026815	-	1	NA	NA	NA	47117	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.045000	0.537313	
mm_25252.1	chr3	104644934	104645134	+	1	NA	NA	NA	6370	NM_009196	20501	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.000000	0.328358	
mm_104570.1	chr11	96943692	96943892	-	1	NA	NA	NA	227	NM_134021	103711	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding	0.090000	0.646766	
mm_51906.1	chr6	91156991	91157191	+	1	NA	NA	NA	276	NM_144919	232232	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	0.040000	0.621891	
mm_46168.1	chr5	96209916	96210116	-	1	NA	NA	NA	-99	NM_001039084	94061	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	0.070000	0.606965	
mm_154093.1	chr19	56822091	56822291	-	1	NA	NA	NA	-4018	NM_001002238	83561	Mm.247541	NM_031387	ENSMUSG00000025081	Tdrd1	MTR-1	tudor domain containing 1	protein-coding	0.115000	0.671642	
mm_31481.1	chr4	52439161	52439361	+	1	NA	NA	NA	40	NM_001301412	14211	Mm.2999	NM_008017	ENSMUSG00000028312	Smc2	5730502P04Rik|AI255214|AW545314|CAP-E|CAPE|Fin16|SMC-2|Smc2l1	structural maintenance of chromosomes 2	protein-coding	0.090000	0.611940	
mm_56418.1	chr6	97252630	97252830	-	1	NA	NA	NA	50	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.000000	0.407960	
mm_165914.1	chr4	57916420	57916620	-	1	NA	NA	NA	-256	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.015000	0.502488	
mm_97596.1	chr11	78948250	78948450	+	1	NA	NA	NA	23059	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.025000	0.577114	
mm_117.1	chr1	9797702	9797902	+	1	NA	NA	NA	-328	NM_133220	170755	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.040000	0.512438	-21(GCCCAGAAAAAG,-,0.00)
mm_120132.1	chr14	60209322	60209522	+	1	NA	NA	NA	19493	NR_030458	751526		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA	0.015000	0.502488	
mm_14984.1	chr2	152177633	152177833	+	1	NA	NA	NA	34124	NM_009328	21407	Mm.3881	NM_009328	ENSMUSG00000068079	Tcf15	Meso1|bHLH-EC2	transcription factor 15	protein-coding	0.025000	0.577114	
mm_90872.1	chr10	8945188	8945388	-	1	NA	NA	NA	-59218	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.025000	0.492537	
mm_128240.1	chr15	36608556	36608756	-	1	NA	NA	NA	317	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.120000	0.736318	
mm_50568.1	chr6	49050022	49050222	+	1	NA	NA	NA	13604	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.005000	0.497512	
mm_73395.1	chr8	105827661	105827861	+	1	NA	NA	NA	17	NM_024445	72236	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	0.050000	0.616915	
mm_165422.1	chr2	151301924	151302124	+	1	NA	NA	NA	-15	NR_040747	74660	Mm.170672	NR_040747	ENSMUSG00000087609	4930442J19Rik	1700029E19Rik|Gm14152|OTTMUSG00000015807	RIKEN cDNA 4930442J19 gene	ncRNA	0.035000	0.472637	
mm_52836.1	chr6	121636162	121636362	+	1	NA	NA	NA	89	NM_175628	232345	Mm.30151	NM_175628	ENSMUSG00000030111	A2m	A2mp	alpha-2-macroglobulin	protein-coding	0.040000	0.636816	
mm_162818.1	chr10	79984558	79984758	+	1	NA	NA	NA	-328	NM_001003949	216157	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0.030000	0.492537	
mm_118070.1	chr13	102906897	102907097	-	1	NA	NA	NA	146742	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.015000	0.303483	
mm_65303.1	chr7	24671973	24672173	-	1	NA	NA	NA	-23	NM_019981	56746	Mm.23385	NM_019981	ENSMUSG00000062773	Tex101	1700008H15Rik|AI429076|TES101RP	testis expressed gene 101	protein-coding	0.055000	0.562189	
mm_28686.1	chr3	95402723	95402923	-	1	NA	NA	NA	18	NR_015490	67654	Mm.75066	NR_015490	ENSMUSG00000105734	4930558C23Rik	-	RIKEN cDNA 4930558C23 gene	ncRNA	0.010000	0.442786	
mm_75452.1	chr8	47710522	47710722	-	1	NA	NA	NA	3309	NM_172407	70925	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.000000	0.318408	
mm_127744.1	chr15	103453721	103453921	+	1	NA	NA	NA	-4	NM_153505	105855	Mm.30805	NM_153505	ENSMUSG00000022488	Nckap1l	4930568P13Rik|AI463083|Hem1|Hemp1	NCK associated protein 1 like	protein-coding	0.025000	0.517413	
mm_62890.1	chr7	115465245	115465445	+	1	NA	NA	NA	336264	NM_001277328	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.015000	0.547264	
mm_122916.1	chr14	54958587	54958787	-	1	NA	NA	NA	7920	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.010000	0.537313	
mm_145577.1	chr18	60963521	60963721	+	1	NA	NA	NA	67	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.010000	0.597015	
mm_153820.1	chr19	46304453	46304653	-	1	NA	NA	NA	-184	NM_001177369	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.090000	0.661692	
mm_106905.1	chr12	8015382	8015582	+	1	NA	NA	NA	37805	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.412935	
mm_135158.1	chr16	35858564	35858764	-	1	NA	NA	NA	12718	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.005000	0.437811	
mm_42204.1	chr5	112326709	112326909	+	1	NA	NA	NA	440	NM_018783	54723	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	0.050000	0.567164	
mm_102812.1	chr11	68956112	68956312	-	1	NA	NA	NA	646	NM_177566	442801	Mm.376147	NM_177566	ENSMUSG00000052921	Arhgef15	D130071N09|D530030K12Rik|E5	Rho guanine nucleotide exchange factor (GEF) 15	protein-coding	0.010000	0.522388	
mm_170538.1	chr19	38874698	38874898	-	1	NA	NA	NA	38219	NM_145952	209478	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	0.025000	0.497512	
mm_35386.1	chr4	33248409	33248609	-	1	NA	NA	NA	278	NM_001033225	108767	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.115000	0.726368	
mm_149384.1	chr19	11381882	11382082	+	1	NA	NA	NA	6494	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.000000	0.407960	
mm_21113.1	chr2	153444501	153444701	-	1	NA	NA	NA	-122	NM_001001986	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.125000	0.830846	
mm_155276.1	chrX	61120394	61120594	+	1	NA	NA	NA	4116	NR_030706	331424	Mm.127263	NM_177916	ENSMUSG00000071753	C230004F18Rik	-	RIKEN cDNA C230004F18 gene	ncRNA	0.005000	0.407960	
mm_98532.1	chr11	95006260	95006460	+	1	NA	NA	NA	-3519	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.015000	0.512438	
mm_29275.1	chr3	107554917	107555117	-	1	NA	NA	NA	56	NM_026261	67591	Mm.55982	NM_026261	ENSMUSG00000055891	Ubl4b	4930522D07Rik	ubiquitin-like 4B	protein-coding	0.005000	0.552239	
mm_115327.1	chr13	112464425	112464625	+	1	NA	NA	NA	455	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.085000	0.616915	
mm_32924.1	chr4	119195186	119195386	+	1	NA	NA	NA	-24	NM_024462	69216	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	0.100000	0.761194	
mm_10359.1	chr2	11697895	11698095	+	1	NA	NA	NA	-7298	NM_001271498	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.010000	0.343284	
mm_44704.1	chr5	30623380	30623580	-	1	NA	NA	NA	-24456	NR_049199	100885838		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.005000	0.432836	
mm_100424.1	chr11	119444158	119444358	+	1	NA	NA	NA	-47089	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.010000	0.547264	
mm_169876.1	chr16	37718927	37719127	+	1	NA	NA	NA	-58028	NM_008047	14314	Mm.182434	NM_008047	ENSMUSG00000022816	Fstl1	AI316791|AW107808|Fstl|TSC-36	follistatin-like 1	protein-coding	0.000000	0.552239	
mm_86490.1	chr10	5593629	5593829	+	1	NA	NA	NA	1	NM_026793	68632	Mm.338242	NM_026793	ENSMUSG00000046916	Myct1	1110020B04Rik|AI225941|AI642973|Mtmc1	myc target 1	protein-coding	0.015000	0.383085	-37(GAGTATAAAAGC,-,0.00),-3(CCTTTTATGTAA,+,0.00)
mm_118493.1	chr14	13284659	13284859	+	1	NA	NA	NA	-21	NM_028052	72003	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.050000	0.656716	
mm_58095.1	chr6	137519790	137519990	-	1	NA	NA	NA	5	NM_001271589	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.015000	0.537313	
mm_97105.1	chr11	74619519	74619719	+	1	NA	NA	NA	14	NM_001013784	432582	Mm.274369	NM_001013784	ENSMUSG00000069814	Ccdc92b	E130309D14Rik	coiled-coil domain containing 92B	protein-coding	0.080000	0.746269	
mm_40046.1	chr5	33982995	33983195	+	1	NA	NA	NA	-338	NM_001033458	381633	Mm.4923	NM_001033458	ENSMUSG00000070858	Gm1673	-	predicted gene 1673	protein-coding	0.055000	0.671642	
mm_20221.1	chr2	125775518	125775718	-	1	NA	NA	NA	7252	NM_177608	70354	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.025000	0.492537	
mm_23395.1	chr3	57779361	57779561	+	1	NA	NA	NA	43399	NR_130743	24017	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0.020000	0.348259	
mm_30201.1	chr3	144720192	144720392	-	1	NA	NA	NA	43	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.165000	0.781095	
mm_33592.1	chr4	132563964	132564164	+	1	NA	NA	NA	-3	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.010000	0.611940	
mm_81218.1	chr9	107587778	107587978	+	1	NA	NA	NA	160	NM_025903	15983	Mm.215335	NM_025903	ENSMUSG00000010048	Ifrd2	1810034A24Rik|AA470234|AI838527|SKMc15	interferon-related developmental regulator 2	protein-coding	0.090000	0.661692	
mm_131039.1	chr16	3884569	3884769	+	1	NA	NA	NA	50	NM_001290689	74763	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|Nat15	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0.115000	0.726368	
mm_67686.1	chr7	89404047	89404247	-	1	NA	NA	NA	-219	NM_008055	14366	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	0.085000	0.696517	
mm_16459.1	chr2	180589351	180589551	+	1	NA	NA	NA	44	NM_031373	72075	Mm.250418	NM_031373	ENSMUSG00000049401	Ogfr	2010013E17Rik	opioid growth factor receptor	protein-coding	0.110000	0.691542	
mm_114783.1	chr13	88827395	88827595	+	1	NA	NA	NA	6023	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.000000	0.388060	-42(TGATTTAAAAGG,-,0.00)
mm_35585.1	chr4	41774070	41774270	-	1	NA	NA	NA	6	NM_001164044	20301	Mm.335946	NM_011336	ENSMUSG00000073888	Ccl27a	ALP|AW558992|CTACK|CTAK|Ccl27|ESkine|ILC|PESKY|Scya27|Scya27a	chemokine (C-C motif) ligand 27A	protein-coding	0.050000	0.592040	
mm_151993.1	chr19	5874884	5875084	-	1	NA	NA	NA	224	NM_026169	67457	Mm.202092	NM_026169	ENSMUSG00000024816	Frmd8	1200004M23Rik|2310035N23Rik|4931429L16Rik|AU018809	FERM domain containing 8	protein-coding	0.045000	0.567164	
mm_75379.1	chr8	45382019	45382219	-	1	NA	NA	NA	172	NM_153535	212326	Mm.51259	NM_153535	ENSMUSG00000070044	Fam149a	AW213256|mKIAA4166	family with sequence similarity 149, member A	protein-coding	0.020000	0.552239	
mm_1971.1	chr1	86504519	86504719	+	1	NA	NA	NA	-22117	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.050000	0.577114	
mm_104646.1	chr11	97540270	97540470	-	1	NA	NA	NA	34756	NM_018873	56013	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.015000	0.522388	
mm_106164.1	chr11	116653953	116654153	-	1	NA	NA	NA	260	NM_030206	114886	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0.125000	0.721393	
mm_55490.1	chr6	69500728	69500928	-	1	NA	NA	NA	-173654	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.363184	-24(TTCTTTTAAAGC,-,0.00),-23(TCTTTTAAAGCA,+,0.00)
mm_144965.1	chr18	37823997	37824197	+	1	NA	NA	NA	4551	NM_033583	93708	Mm.247203	NM_033583	ENSMUSG00000102543	Pcdhgc5	-	protocadherin gamma subfamily C, 5	protein-coding	0.020000	0.517413	
mm_166796.1	chr7	3330710	3330910	+	1	NA	NA	NA	-5775	NM_133189	81904	Mm.214994	NM_133189	ENSMUSG00000069806	Cacng7	-	calcium channel, voltage-dependent, gamma subunit 7	protein-coding	0.020000	0.537313	
mm_64769.1	chr7	4995209	4995409	-	1	NA	NA	NA	792	NM_026741	68490	Mm.76400	NM_026741	ENSMUSG00000051550	Zfp579	1110003A17Rik|Znf579	zinc finger protein 579	protein-coding	0.005000	0.547264	
mm_65853.1	chr7	29281856	29282056	-	1	NA	NA	NA	21	NM_001082548	20733	Mm.295230	NM_011464	ENSMUSG00000074227	Spint2	AL024025|C76321|HAI-2	serine protease inhibitor, Kunitz type 2	protein-coding	0.095000	0.706468	
mm_68721.1	chr7	120145189	120145389	-	1	NA	NA	NA	2	NM_011775	22787	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	0.045000	0.606965	
mm_74807.1	chr8	22633127	22633327	-	1	NA	NA	NA	3582	NR_027886	68074	Mm.463136	NR_027886		A930013F10Rik	-	RIKEN cDNA A930013F10 gene	ncRNA	0.000000	0.412935	
mm_83757.1	chr9	51943273	51943473	-	1	NA	NA	NA	20229	NM_007996	14148	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	0.000000	0.278607	
mm_50037.1	chr6	41141063	41141263	+	1	NA	NA	NA	-105654	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.437811	
mm_61001.1	chr7	49304185	49304385	+	1	NA	NA	NA	58096	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.055000	0.681592	
mm_159935.1	chr6	71912295	71912495	+	1	NA	NA	NA	3342	NM_009088	20019	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0.000000	0.482587	59(AGATTTAAAAGG,-,0.00)
mm_77819.1	chr9	3335386	3335586	+	1	NA	NA	NA	255	NM_026303	67667	Mm.116968	NM_026303	ENSMUSG00000025899	Alkbh8	4930562C03Rik|8030431D03Rik|9430088N01Rik|Abh8	alkB homolog 8, tRNA methyltransferase	protein-coding	0.035000	0.537313	
mm_142321.1	chr17	43361254	43361454	-	1	NA	NA	NA	-28112	NM_001081178	224792	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	0.020000	0.472637	
mm_63322.1	chr7	126941945	126942145	+	1	NA	NA	NA	7536	NM_001347657	233879	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0.010000	0.587065	
mm_96049.1	chr11	59559636	59559836	+	1	NA	NA	NA	12002	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.015000	0.497512	
mm_99919.1	chr11	110399067	110399267	+	1	NA	NA	NA	45	NM_011943	26399	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.030000	0.527363	
mm_118115.1	chr13	103921808	103922008	-	1	NA	NA	NA	-1322	NM_001005868	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.025000	0.447761	
mm_92566.1	chr10	79874476	79874676	-	1	NA	NA	NA	58	NM_181681	216152	Mm.29678	NM_181681	ENSMUSG00000035835	Plppr3	Lppr3|Prg2	phospholipid phosphatase related 3	protein-coding	0.125000	0.711443	
mm_52761.1	chr6	120836129	120836329	+	1	NA	NA	NA	-1	NM_153516	94044	Mm.27990	NM_153516	ENSMUSG00000009112	Bcl2l13	BCL-RAMBO|E430016C20Rik|Mil-1|Mil1	BCL2-like 13 (apoptosis facilitator)	protein-coding	0.125000	0.701493	
mm_128027.1	chr15	25148986	25149186	-	1	NA	NA	NA	264678	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.010000	0.407960	
mm_55066.1	chr6	49050403	49050603	-	1	NA	NA	NA	13985	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.010000	0.467662	
mm_131670.1	chr16	20672688	20672888	+	1	NA	NA	NA	61	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.120000	0.696517	
mm_26947.1	chr3	20266424	20266624	-	1	NA	NA	NA	9209	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.015000	0.447761	
mm_31475.1	chr4	50789519	50789719	+	1	NA	NA	NA	-427059	NM_001162865	74914	Mm.159368	NM_001162865	ENSMUSG00000039555	Cylc2	4930488P18Rik	cylicin, basic protein of sperm head cytoskeleton 2	protein-coding	0.000000	0.353234	
mm_120315.1	chr14	63142628	63142828	+	1	NA	NA	NA	20266	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.020000	0.547264	
mm_78898.1	chr9	44641254	44641454	+	1	NA	NA	NA	-31879	NM_001277851	58866	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0.005000	0.417910	
mm_88275.1	chr10	75037166	75037366	+	1	NA	NA	NA	177	NM_029781	76877	Mm.133593	NM_029781	ENSMUSG00000020175	Rab36	6330593L16Rik|AW047545	RAB36, member RAS oncogene family	protein-coding	0.095000	0.666667	
mm_113564.1	chr13	38204845	38205045	+	1	NA	NA	NA	6	NM_026382	67797	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	0.090000	0.681592	
mm_166590.1	chr6	56569066	56569266	-	1	NA	NA	NA	135533	NM_025520	66373	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.035000	0.522388	
mm_79236.1	chr9	50499160	50499360	+	1	NA	NA	NA	4735	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.015000	0.477612	
mm_113149.1	chr13	24741124	24741324	+	1	NA	NA	NA	20713	NM_020567	57441	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.025000	0.507463	
mm_143848.1	chr17	84140871	84141071	-	1	NA	NA	NA	46976	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.020000	0.572139	
mm_129337.1	chr15	77836155	77836355	-	1	NA	NA	NA	5920	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.015000	0.577114	54(CTCTTTAAAAGG,-,0.00),55(TCTTTAAAAGGG,+,0.00)
mm_34585.1	chr4	150148811	150149011	+	1	NA	NA	NA	-61	NM_001085529	435818	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	OTTMUSG00000010396	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0.025000	0.572139	
mm_105226.1	chr11	102296550	102296750	-	1	NA	NA	NA	-21	NM_001098837	217218	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0.165000	0.830846	
mm_155769.1	chrX	96242809	96243009	+	1	NA	NA	NA	92	NR_029801	723814		NR_029801	ENSMUSG00000076066	Mir223	Mirn223|miR-223|mmu-mir-223	microRNA 223	ncRNA	0.010000	0.482587	
mm_28043.1	chr3	83862970	83863170	-	1	NA	NA	NA	-21462	NM_011905	24088	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.005000	0.482587	
mm_97789.1	chr11	82827663	82827863	+	1	NA	NA	NA	1280	NM_026097	67338	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.040000	0.532338	-33(TTCTATAAAAGT,-,0.00)
mm_37316.1	chr4	119359698	119359898	-	1	NA	NA	NA	96	NM_001270446	73332	Mm.425204	NM_028506	ENSMUSG00000028637	Ccdc30	1700001O02Rik|1700041C02Rik|1700111D19Rik|4930445I03Rik	coiled-coil domain containing 30	protein-coding	0.050000	0.542289	
mm_72765.1	chr8	85601931	85602131	+	1	NA	NA	NA	-46760	NM_019794	56445	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0.015000	0.537313	
mm_154281.1	chr19	60790932	60791132	-	1	NA	NA	NA	-339	NM_010123	13669	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	0.055000	0.542289	
mm_12404.1	chr2	70475972	70476172	+	1	NA	NA	NA	1149	NM_022435	64406	Mm.423397	NM_022435	ENSMUSG00000075304	Sp5	-	trans-acting transcription factor 5	protein-coding	0.095000	0.706468	
mm_94196.1	chr11	3100345	3100545	+	1	NA	NA	NA	-23576	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.025000	0.378109	
mm_155335.1	chrX	66652917	66653117	+	1	NA	NA	NA	-142	NM_198863	245450	Mm.336081	NM_198863	ENSMUSG00000036790	Slitrk2	A930040J07	SLIT and NTRK-like family, member 2	protein-coding	0.065000	0.626866	
mm_97450.1	chr11	78193266	78193466	+	1	NA	NA	NA	-26	NM_001045516	216974	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	0.000000	0.417910	
mm_103703.1	chr11	79516440	79516640	-	1	NA	NA	NA	7222	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.015000	0.422886	
mm_142452.1	chr17	45592804	45593004	-	1	NA	NA	NA	-511	NM_022880	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.015000	0.592040	
mm_142715.1	chr17	47924544	47924744	-	1	NA	NA	NA	-12	NM_001110825	74123	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.145000	0.781095	
mm_135218.1	chr16	36665950	36666150	-	1	NA	NA	NA	27	NM_019388	12524	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.030000	0.487562	
mm_44919.1	chr5	35728963	35729163	-	1	NA	NA	NA	213	NM_194344	231147	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.025000	0.661692	
mm_103317.1	chr11	73176892	73177092	-	1	NA	NA	NA	16	NM_001168470	66048	Mm.73608	NM_025318	ENSMUSG00000047260	Emc6	0610009E20Rik|0610025L18Rik|Tmem93	ER membrane protein complex subunit 6	protein-coding	0.110000	0.676617	
mm_4307.1	chr1	171840760	171840960	+	1	NA	NA	NA	1163	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.010000	0.462687	
mm_105903.1	chr11	114982984	114983184	-	1	NA	NA	NA	6802	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.005000	0.442786	
mm_39468.1	chr5	19696941	19697141	+	1	NA	NA	NA	-210477	NM_001170745	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.000000	0.338308	
mm_77091.1	chr8	110793511	110793711	-	1	NA	NA	NA	12313	NM_029646	76527	Mm.77697	NM_029646	ENSMUSG00000031750	Il34	2010004A03Rik|AI593503	interleukin 34	protein-coding	0.020000	0.582090	
mm_132995.1	chr16	55818011	55818211	+	1	NA	NA	NA	4027	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.035000	0.547264	
mm_23965.1	chr3	84952395	84952595	+	1	NA	NA	NA	284	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.040000	0.537313	-32(CCTTTTCTGGCG,+,0.00)
mm_64557.1	chr7	144741993	144742193	+	1	NA	NA	NA	-3501	NM_001242349	101772	Mm.26700	NM_178642	ENSMUSG00000031075	Ano1	Tmem16a	anoctamin 1, calcium activated chloride channel	protein-coding	0.020000	0.577114	
mm_160675.1	chr10	11082338	11082538	-	1	NA	NA	NA	-107	NM_016976	14816	Mm.391904	NM_016976	ENSMUSG00000019828	Grm1	4930455H15Rik|ENSMUSG00000075319|Gm10828|Gprc1a|mGluR1|nmf373|rcw|wobl	glutamate receptor, metabotropic 1	protein-coding	0.015000	0.412935	
mm_99635.1	chr11	105181550	105181750	+	1	NA	NA	NA	123	NM_001294329	24086	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	0.105000	0.681592	
mm_137967.1	chr17	33524014	33524214	+	1	NA	NA	NA	29	NM_001329147	224697	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	0.085000	0.661692	
mm_168826.1	chr12	22558820	22559020	+	1	NA	NA	NA	-402274	NR_136920	100043416		NM_001004167	ENSMUSG00000093846	Gm4425	EG432637|Gm5433	KRAB-domain protein pseudogene	pseudo	0.045000	0.572139	
mm_102512.1	chr11	60777348	60777548	-	1	NA	NA	NA	-77	NM_001085440	237782	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	0.040000	0.512438	-28(CGCCTTTTAAGA,-,0.00),-27(GCCTTTTAAGAG,-,0.00),-26(CCTTTTAAGAGG,+,0.00),-25(CTTTTAAGAGGC,+,0.00)
mm_113515.1	chr13	37787123	37787323	+	1	NA	NA	NA	-38815	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.010000	0.422886	
mm_113606.1	chr13	41249752	41249952	+	1	NA	NA	NA	8	NM_001135577	108934	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.090000	0.706468	
mm_164823.1	chr18	36195579	36195779	+	1	NA	NA	NA	1481	NM_001167891	100042150	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0.015000	0.497512	
mm_171384.1	chr4	120825603	120825803	-	1	NA	NA	NA	38	NM_001277095	18046	Mm.435590	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0.135000	0.701493	
mm_117896.1	chr13	99425039	99425239	-	1	NA	NA	NA	-12313	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.025000	0.422886	
mm_152689.1	chr19	16780731	16780931	-	1	NA	NA	NA	102	NM_173028	271564	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.110000	0.671642	
mm_119741.1	chr14	54122045	54122245	+	1	NA	NA	NA	131784	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.025000	0.522388	
mm_121488.1	chr14	121239631	121239831	+	1	NA	NA	NA	139499	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.025000	0.447761	
mm_12067.1	chr2	59611972	59612172	+	1	NA	NA	NA	30	NM_198294	66860	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.140000	0.786070	
mm_138157.1	chr17	34239776	34239976	+	1	NA	NA	NA	971	NM_010389	15002	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	0.030000	0.442786	
mm_36404.1	chr4	77893299	77893499	-	1	NA	NA	NA	318496	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.005000	0.333333	
mm_168048.1	chrY	90811673	90811873	+	1	NA	NA	NA	26331	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.005000	0.467662	
mm_56846.1	chr6	117907566	117907766	-	1	NA	NA	NA	-138	NM_001166428	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.115000	0.731343	
mm_117199.1	chr13	64059713	64059913	-	1	NA	NA	NA	29388	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.000000	0.492537	
mm_155430.1	chrX	73492923	73493123	+	1	NA	NA	NA	9422	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.010000	0.537313	
mm_91211.1	chr10	21341955	21342155	-	1	NA	NA	NA	0	NR_045352	73990	Mm.399240	NR_045352		4930455C13Rik	-	RIKEN cDNA 4930455C13 gene	ncRNA	0.040000	0.562189	
mm_1070.1	chr1	59298830	59299030	+	1	NA	NA	NA	42023	NM_001033373	271697	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	0.015000	0.552239	
mm_163517.1	chr12	114479394	114479594	-	1	NA	NA	NA	-10028	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.000000	0.383085	
mm_83500.1	chr9	45954877	45955077	-	1	NA	NA	NA	272	NM_172257	214597	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	0.135000	0.721393	
mm_145746.1	chr18	64340478	64340678	+	1	NA	NA	NA	214	NM_194268	225631	Mm.234723	NM_194268	ENSMUSG00000045991	Onecut2	C730009D12|OC-2|Oc2	one cut domain, family member 2	protein-coding	0.160000	0.855721	
mm_159707.1	chr5	30205621	30205821	-	1	NA	NA	NA	1	NM_001014394	381628	Mm.291148	NM_001014394	ENSMUSG00000067642	Adgrf3	Gm1041|Gpr113|Pgr23	adhesion G protein-coupled receptor F3	protein-coding	0.020000	0.626866	
mm_26633.1	chr3	152928795	152928995	+	1	NA	NA	NA	53312	NM_012028	26938	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.005000	0.457711	
mm_77203.1	chr8	113848651	113848851	-	1	NA	NA	NA	88	NM_172466	208936	Mm.167471	NM_172466	ENSMUSG00000053399	Adamts18	9630038L21|ADAMTS21|E130314N14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	protein-coding	0.095000	0.656716	
mm_100355.1	chr11	118433745	118433945	+	1	NA	NA	NA	44	NM_019959	56745	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.025000	0.497512	
mm_117618.1	chr13	91807546	91807746	-	1	NA	NA	NA	50	NM_145453	69085	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	0.090000	0.631841	
mm_16173.1	chr2	172549543	172549743	+	1	NA	NA	NA	50	NM_009335	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding	0.110000	0.661692	
mm_16063.1	chr2	167932292	167932492	+	1	NA	NA	NA	65	NM_011201	19246	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.135000	0.736318	
mm_151694.1	chr19	4388101	4388301	-	1	NA	NA	NA	8876	NM_001001984	225876	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0.005000	0.368159	
mm_146169.1	chr18	75279373	75279573	+	1	NA	NA	NA	17844	NR_045394	100503117	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.030000	0.542289	
mm_23496.1	chr3	60516857	60517057	+	1	NA	NA	NA	15778	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.010000	0.402985	
mm_154747.1	chrX	10518526	10518726	+	1	NA	NA	NA	33510	NM_019634	21912	Mm.18590	NM_019634	ENSMUSG00000058254	Tspan7	1200014P11Rik|A15|AI323365|Cd231|Mxs1|PE31|R74651|TALLA|Tm4sf2	tetraspanin 7	protein-coding	0.010000	0.422886	
mm_102681.1	chr11	65268984	65269184	-	1	NA	NA	NA	905	NM_145136	214384	Mm.32257	NM_145136	ENSMUSG00000020542	Myocd	BSAC2A|Srfcp	myocardin	protein-coding	0.015000	0.422886	
mm_133592.1	chr16	91458316	91458516	+	1	NA	NA	NA	-6688	NR_077219	100503120	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.055000	0.527363	
mm_85415.1	chr9	103449076	103449276	-	1	NA	NA	NA	25598	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.015000	0.487562	
mm_26874.1	chr3	17691838	17692038	-	1	NA	NA	NA	-97983	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.000000	0.313433	
mm_53095.1	chr6	125009189	125009389	+	1	NA	NA	NA	51	NM_001252083	269800	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	0.145000	0.781095	
mm_136268.1	chr16	91044320	91044520	-	1	NA	NA	NA	-41	NM_026110	67367	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.145000	0.706468	
mm_109906.1	chr12	8301888	8302088	-	1	NA	NA	NA	-34	NM_013527	238057	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	0.100000	0.696517	
mm_137391.1	chr17	25819729	25819929	+	1	NA	NA	NA	-3798	NM_173741	268933	Mm.95512	NM_173741	ENSMUSG00000025737	Wdr24	BC037651	WD repeat domain 24	protein-coding	0.060000	0.656716	
mm_153589.1	chr19	43524271	43524471	-	1	NA	NA	NA	234	NM_010324	14718	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.060000	0.597015	
mm_167430.1	chr8	117794659	117794859	+	1	NA	NA	NA	7170	NM_026758	68533	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	0.040000	0.582090	
mm_168005.1	chrY	4453495	4453695	+	1	NA	NA	NA	681922	NM_011253	19657	Mm.4711	NM_011253	ENSMUSG00000094658	Rbmy	RBM|Rbm1|Rbm1-rs1|Rbmy1a1|Rbmy1a1-rs1|Rbmy1b	RNA binding motif protein, Y chromosome	protein-coding	0.005000	0.407960	
mm_155126.1	chrX	48884923	48885123	+	1	NA	NA	NA	-7310	NM_001085499	209005	Mm.336054	NM_001085499	ENSMUSG00000079606	Gm595	-	predicted gene 595	protein-coding	0.020000	0.462687	
mm_167466.1	chr8	125569397	125569597	+	1	NA	NA	NA	-15141	NR_015535	75930	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	0.130000	0.666667	
mm_153561.1	chr19	42202057	42202257	-	1	NA	NA	NA	95	NM_018780	54612	Mm.470071	NM_018780	ENSMUSG00000018822	Sfrp5	AI605071|SARP3	secreted frizzled-related sequence protein 5	protein-coding	0.085000	0.716418	
mm_23642.1	chr3	67373997	67374197	+	1	NA	NA	NA	0	NM_010801	17349	Mm.10414	NM_010801	ENSMUSG00000048416	Mlf1	HLS7	myeloid leukemia factor 1	protein-coding	0.120000	0.661692	
mm_61115.1	chr7	54835547	54835747	+	1	NA	NA	NA	402	NM_178705	233271	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	0.070000	0.636816	
mm_89740.1	chr10	99023581	99023781	+	1	NA	NA	NA	-83490	NM_027740	382406	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.005000	0.308458	
mm_30515.1	chr3	158282107	158282307	-	1	NA	NA	NA	245525	NM_001289524	67144	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	0.005000	0.258706	
mm_134737.1	chr16	23025134	23025334	-	1	NA	NA	NA	3867	NM_201375	385643	Mm.440414	NM_201375	ENSMUSG00000060459	Kng2	-	kininogen 2	protein-coding	0.010000	0.477612	
mm_167676.1	chr9	77096967	77097167	+	1	NA	NA	NA	-51286	NM_012033	26944	Mm.23199	NM_012033	ENSMUSG00000032357	Tinag	AI452335|TIN-ag	tubulointerstitial nephritis antigen	protein-coding	0.000000	0.487562	
mm_99739.1	chr11	106375208	106375408	+	1	NA	NA	NA	482	NM_029345	75573	Mm.159539	NM_029345	ENSMUSG00000009210	Prr29	2310007L24Rik	proline rich 29	protein-coding	0.015000	0.577114	
mm_156844.1	chrX	164385833	164386033	+	1	NA	NA	NA	12411	NM_010216	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.045000	0.502488	
mm_129004.1	chr15	74876559	74876759	-	1	NA	NA	NA	5045	NM_025929	67038	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.025000	0.497512	
mm_129540.1	chr15	79357643	79357843	-	1	NA	NA	NA	9341	NM_001304832	17133	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.160000	0.761194	
mm_78696.1	chr9	41137306	41137506	+	1	NA	NA	NA	20088	NM_176860	72828	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0.010000	0.497512	-28(GCATATATAAGA,-,0.00)
mm_51944.1	chr6	91724837	91725037	+	1	NA	NA	NA	40870	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.015000	0.497512	
mm_164192.1	chr15	78774785	78774985	-	1	NA	NA	NA	-1440	NM_008595	17305	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.015000	0.621891	
mm_163635.1	chr13	59640126	59640326	-	1	NA	NA	NA	35558	NM_001035122	105348	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0.040000	0.616915	
mm_149531.1	chr19	12461078	12461278	+	1	NA	NA	NA	399	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.020000	0.462687	
mm_170243.1	chr17	92057351	92057551	+	1	NA	NA	NA	-964649	NM_020252	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.000000	0.388060	
mm_45291.1	chr5	65019101	65019301	-	1	NA	NA	NA	48883	NR_030577	100124451		NR_030577	ENSMUSG00000077042	Mir574	Mirn574|mir-574|mmu-mir-574	microRNA 574	ncRNA	0.015000	0.527363	-32(CATTTTAAAGAC,+,0.00)
mm_65668.1	chr7	28291009	28291209	-	1	NA	NA	NA	25	NM_175033	280621	Mm.212777	NM_175033	ENSMUSG00000046750	Selenov	Selv	selenoprotein V	protein-coding	0.085000	0.641791	
mm_94816.1	chr11	23152029	23152229	+	1	NA	NA	NA	-11	NR_131065	76993	Mm.59224	NR_131065	ENSMUSG00000086366	1700061J23Rik	-	RIKEN cDNA 1700061J23 gene	ncRNA	0.000000	0.522388	
mm_38645.1	chr4	143245789	143245989	-	1	NA	NA	NA	-33180	NM_001256380	110593	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0.045000	0.572139	-33(CCCTATAAAAGG,-,0.00)
mm_111127.1	chr12	81456827	81457027	-	1	NA	NA	NA	27924	NR_132135	66272	Mm.439970	NM_025461	ENSMUSG00000091803	Cox16	1810020G14Rik|1810055I05Rik|BB388670	cytochrome c oxidase assembly protein 16	protein-coding	0.000000	0.203980	
mm_27280.1	chr3	41467278	41467478	-	1	NA	NA	NA	25821	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.015000	0.487562	
mm_21814.1	chr2	165283510	165283710	-	1	NA	NA	NA	4177	NM_001252574	228875	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.015000	0.592040	
mm_89578.1	chr10	95708047	95708247	+	1	NA	NA	NA	-143980	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.010000	0.542289	
mm_155681.1	chrX	93654876	93655076	+	1	NA	NA	NA	113	NM_177546	236899	Mm.166467	NM_177546	ENSMUSG00000035246	Pcyt1b	AW045697|CTTbeta	phosphate cytidylyltransferase 1, choline, beta isoform	protein-coding	0.000000	0.437811	76(CTTTTTAAACCA,+,0.00)
mm_67350.1	chr7	79835311	79835511	-	1	NA	NA	NA	6941	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.015000	0.482587	
mm_20710.1	chr2	134554259	134554459	-	1	NA	NA	NA	-7	NM_010403	15112	Mm.26634	NM_010403	ENSMUSG00000027261	Hao1	GOX|Gox1|Hao-1	hydroxyacid oxidase 1, liver	protein-coding	0.015000	0.402985	
mm_49383.1	chr6	24733173	24733373	+	1	NA	NA	NA	28	NM_028920	74409	Mm.87331	NM_028920	ENSMUSG00000029679	Hyal6	4932701A20Rik|Hyal-ps1|Hyalp1	hyaluronoglucosaminidase 6	protein-coding	0.015000	0.422886	
mm_102736.1	chr11	67250860	67251060	-	1	NA	NA	NA	13148	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.010000	0.452736	
mm_155148.1	chrX	52791090	52791290	+	1	NA	NA	NA	-10	NM_001034059	434778	Mm.23411	NM_001034059	ENSMUSG00000073207	Ccdc160	6330534C20Rik	coiled-coil domain containing 160	protein-coding	0.065000	0.651741	-56(CCCTTTAAATCC,+,0.00)
mm_95655.1	chr11	53763738	53763938	+	1	NA	NA	NA	-184	NR_106131	102465772		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.040000	0.666667	
mm_63422.1	chr7	127471418	127471618	+	1	NA	NA	NA	-96	NM_145589	233895	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.055000	0.547264	
mm_134175.1	chr16	10838461	10838661	-	1	NA	NA	NA	3502	NM_001162932	223970	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.010000	0.502488	
mm_37503.1	chr4	123750133	123750333	-	1	NA	NA	NA	66	NM_023423	68050	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	0.115000	0.721393	
mm_3670.1	chr1	153665204	153665404	+	1	NA	NA	NA	-369	NM_001347115	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding	0.005000	0.577114	
mm_104834.1	chr11	99153922	99154122	-	1	NA	NA	NA	1055	NM_001301713	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.015000	0.567164	-33(GACTTTAAAAAG,-,0.00),-31(CTTTAAAAAGTG,+,0.00)
mm_129253.1	chr15	76695877	76696077	-	1	NA	NA	NA	-749	NM_182805	76282	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	0.000000	0.532338	
mm_5547.1	chr1	38627444	38627644	-	1	NA	NA	NA	-300	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.205000	0.860697	
mm_131695.1	chr16	20694905	20695105	+	1	NA	NA	NA	-52	NM_133778	78408	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0.010000	0.537313	
mm_79883.1	chr9	65265080	65265280	+	1	NA	NA	NA	0	NM_173385	214425	Mm.138455	NM_173385	ENSMUSG00000042254	Cilp	9830114D16|C130036G17Rik	cartilage intermediate layer protein, nucleotide pyrophosphohydrolase	protein-coding	0.020000	0.567164	-33(TGCTATATAAGA,-,0.00)
mm_114828.1	chr13	92354657	92354857	+	1	NA	NA	NA	-26	NM_010049	13361	Mm.23695	NM_010049	ENSMUSG00000021707	Dhfr	8430436I03Rik|AA607882|AI662710|AW555094	dihydrofolate reductase	protein-coding	0.100000	0.691542	
mm_128856.1	chr15	72547541	72547741	-	1	NA	NA	NA	-1362	NM_001033876	223604	Mm.386856	NM_001033876	ENSMUSG00000036760	Kcnk9	Task3	potassium channel, subfamily K, member 9	protein-coding	0.090000	0.686567	
mm_132062.1	chr16	30008565	30008765	+	1	NA	NA	NA	-2	NR_033631	100043102	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	0.015000	0.611940	
mm_18310.1	chr2	54085313	54085513	-	1	NA	NA	NA	139	NM_023396	67874	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	0.085000	0.651741	
mm_33544.1	chr4	130934521	130934721	+	1	NA	NA	NA	-9764	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.005000	0.601990	
mm_125738.1	chr15	73512567	73512767	+	1	NA	NA	NA	107	NM_001081066	105841	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.120000	0.746269	
mm_99623.1	chr11	104637444	104637644	+	1	NA	NA	NA	29544	NM_016780	16416	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding	0.005000	0.502488	
mm_81440.1	chr9	109103464	109103664	+	1	NA	NA	NA	8128	NM_172775	235611	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.005000	0.512438	-20(GCCCTTAAATGA,-,0.00)
mm_52243.1	chr6	105677655	105677855	+	1	NA	NA	NA	10	NM_173004	269784	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding	0.065000	0.616915	
mm_68217.1	chr7	104410069	104410269	-	1	NA	NA	NA	-51523	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.010000	0.477612	
mm_129217.1	chr15	76534874	76535074	-	1	NA	NA	NA	3772	NM_013909	30840	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	0.010000	0.547264	
mm_125795.1	chr15	74819015	74819215	+	1	NA	NA	NA	39	NM_010416	15202	Mm.17336	NM_010416	ENSMUSG00000068600	Gml2	1700057K19Rik|HemT|Hemt1	glycosylphosphatidylinositol anchored molecule like 2	protein-coding	0.030000	0.512438	
mm_22751.1	chr3	19970820	19971020	+	1	NA	NA	NA	13866	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.020000	0.492537	
mm_47519.1	chr5	124095685	124095885	-	1	NA	NA	NA	13	NM_019875	56325	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.105000	0.731343	
mm_166235.1	chr5	67815745	67815945	-	1	NA	NA	NA	31586	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.025000	0.527363	
mm_106029.1	chr11	116076958	116077158	-	1	NA	NA	NA	903	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.020000	0.616915	
mm_164942.1	chr19	3686403	3686603	-	1	NA	NA	NA	61	NM_008513	16973	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0.195000	0.810945	
mm_151058.1	chr19	47179267	47179467	+	1	NA	NA	NA	547	NM_021360	18011	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.115000	0.766169	
mm_5432.1	chr1	34816813	34817013	-	1	NA	NA	NA	15191	NM_183019	226970	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef|ENSMUSG00000070955	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0.020000	0.567164	
mm_135761.1	chr16	56712732	56712932	-	1	NA	NA	NA	4618	NM_001252443	21787	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0.005000	0.393035	
mm_103874.1	chr11	83525948	83526148	-	1	NA	NA	NA	-3949	NM_001045543	629303	Mm.390417	NM_001045543	ENSMUSG00000018925	Heatr9	Gm11435|OTTMUSG00000000990	HEAT repeat containing 9	protein-coding	0.030000	0.507463	
mm_162157.1	chrX	89409597	89409797	-	1	NA	NA	NA	-8	NM_008821	18630	Mm.3086	NM_008821	ENSMUSG00000035395	Pet2	PC231|PC326|Pex3	plasmacytoma expressed transcript 2	protein-coding	0.045000	0.452736	-42(TCGTATTTAAGG,-,0.00)
mm_24807.1	chr3	95556243	95556443	+	1	NA	NA	NA	-3334	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.010000	0.338308	
mm_104345.1	chr11	94242817	94243017	-	1	NA	NA	NA	-338	NM_181819	278507	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	0.050000	0.606965	
mm_172623.1	chr8	20270662	20270862	-	1	NA	NA	NA	26670	NR_030708	547150	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0.005000	0.467662	
mm_142340.1	chr17	43591376	43591576	-	1	NA	NA	NA	33	NR_045445	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.010000	0.462687	
mm_93483.1	chr10	111995817	111996017	-	1	NA	NA	NA	1347	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.005000	0.442786	87(CCTTTTAGGGTT,+,0.00)
mm_116178.1	chr13	30820651	30820851	-	1	NA	NA	NA	71518	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.015000	0.522388	
mm_139788.1	chr17	65799969	65800169	+	1	NA	NA	NA	16714	NR_104465	70351	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0.010000	0.432836	
mm_162230.1	chrX	149941538	149941738	+	1	NA	NA	NA	-17	NM_001122735	382244	Mm.359506	NM_001122735	ENSMUSG00000095082	Gm15091	OTTMUSG00000018981	predicted gene 15091	protein-coding	0.020000	0.567164	-17(GCCTTTAGGGGA,+,0.00)
mm_70058.1	chr7	142651489	142651689	-	1	NA	NA	NA	3407	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.025000	0.646766	
mm_13054.1	chr2	91102239	91102439	+	1	NA	NA	NA	5661	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.020000	0.467662	
mm_55352.1	chr6	56804215	56804415	-	1	NA	NA	NA	-6502	NM_145958	210973	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0.025000	0.582090	
mm_144099.1	chr18	3446801	3447001	+	1	NA	NA	NA	-61056	NM_026505	68010	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	0.020000	0.482587	
mm_91147.1	chr10	20175218	20175418	-	1	NA	NA	NA	26398	NM_001198635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.010000	0.552239	
mm_147557.1	chr18	54985117	54985317	-	1	NA	NA	NA	4963	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.000000	0.338308	
mm_7893.1	chr1	133382703	133382903	-	1	NA	NA	NA	19231	NM_175443	214253	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	0.020000	0.641791	
mm_124573.1	chr14	124443533	124443733	-	1	NA	NA	NA	233494	NM_207667	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.000000	0.373134	
mm_116319.1	chr13	37743770	37743970	-	1	NA	NA	NA	-82168	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.010000	0.388060	19(ATCTATAAAAAG,-,0.00)
mm_21251.1	chr2	156196442	156196642	-	1	NA	NA	NA	-105	NM_172674	228829	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	0.085000	0.666667	
mm_75187.1	chr8	36953289	36953489	-	1	NA	NA	NA	-947	NM_001194940	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.010000	0.393035	-33(GGTCATAAAAGA,-,0.00)
mm_54769.1	chr6	41519805	41520005	-	1	NA	NA	NA	-1871	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.432836	
mm_51799.1	chr6	88635937	88636137	+	1	NA	NA	NA	-8589	NM_001278671	74589	Mm.196226	NM_029013	ENSMUSG00000033182	Kbtbd12	4833415F11Rik|4933428M03Rik|Klhdc6	kelch repeat and BTB (POZ) domain containing 12	protein-coding	0.005000	0.467662	-65(CATTCTAAAAGG,-,0.00)
mm_78432.1	chr9	31948244	31948444	+	1	NA	NA	NA	-35059	NM_013800	12023	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.015000	0.547264	
mm_82551.1	chr9	20952760	20952960	-	1	NA	NA	NA	119	NM_010066	13433	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0.095000	0.631841	
mm_167705.1	chr9	92942248	92942448	+	1	NA	NA	NA	63385	NR_040756	78349	Mm.52612	NR_040756	ENSMUSG00000100294	1700034K08Rik	-	RIKEN cDNA 1700034K08 gene	ncRNA	0.005000	0.467662	
mm_131334.1	chr16	13348845	13349045	+	1	NA	NA	NA	-9476	NM_153588	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.005000	0.343284	
mm_88838.1	chr10	80855231	80855431	+	1	NA	NA	NA	56	NM_175195	73218	Mm.3285	NM_175195	ENSMUSG00000035206	Sppl2b	3110056O03Rik|AW550292|PSL1	signal peptide peptidase like 2B	protein-coding	0.140000	0.726368	
mm_83321.1	chr9	44163325	44163525	-	1	NA	NA	NA	28767	NM_023061	84004	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.030000	0.512438	-23(GCCTATTAAGGC,-,0.00)
mm_23286.1	chr3	51788883	51789083	+	1	NA	NA	NA	127804	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.035000	0.512438	
mm_92850.1	chr10	81524154	81524354	-	1	NA	NA	NA	-29	NM_010304	14676	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.020000	0.646766	
mm_114691.1	chr13	81783217	81783417	+	1	NA	NA	NA	25	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.070000	0.616915	
mm_104296.1	chr11	90390552	90390752	-	1	NA	NA	NA	265	NM_172563	217082	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0.045000	0.482587	
mm_39240.1	chr5	3341104	3341304	+	1	NA	NA	NA	-2689	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.075000	0.592040	
mm_64217.1	chr7	141539908	141540108	+	1	NA	NA	NA	-151	NM_001142681	68038	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0.070000	0.611940	
mm_86849.1	chr10	21593045	21593245	+	1	NA	NA	NA	0	NR_027968	67692	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.060000	0.616915	
mm_30975.1	chr4	34550824	34551024	+	1	NA	NA	NA	309	NM_001007589	433693	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.175000	0.840796	
mm_76219.1	chr8	83571744	83571944	-	1	NA	NA	NA	5086	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.030000	0.606965	
mm_75348.1	chr8	43320500	43320700	-	1	NA	NA	NA	-13591	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.035000	0.477612	
mm_147223.1	chr18	38203690	38203890	-	1	NA	NA	NA	5972	NM_029357	75599	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.030000	0.587065	
mm_123173.1	chr14	57525412	57525612	-	1	NA	NA	NA	683	NM_145837	239114	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	0.135000	0.771144	
mm_20003.1	chr2	119029274	119029474	-	1	NA	NA	NA	19	NM_199310	269336	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	0.055000	0.532338	
mm_126906.1	chr15	89574095	89574295	+	1	NA	NA	NA	5869	NM_001277246	11434	Mm.57	NM_013455	ENSMUSG00000022622	Acr	-	acrosin prepropeptide	protein-coding	0.065000	0.601990	
mm_130426.1	chr15	98098575	98098775	-	1	NA	NA	NA	-5106	NM_144851	223870	Mm.384023	NM_144851	ENSMUSG00000033075	Senp1	2310046A20Rik|D15Ertd528e|E330036L07Rik|suPr-2	SUMO1/sentrin specific peptidase 1	protein-coding	0.030000	0.532338	-33(GAGTATAAAAGG,-,0.00)
mm_35077.1	chr4	6990554	6990754	-	1	NA	NA	NA	69	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.035000	0.472637	
mm_87177.1	chr10	38966836	38967036	+	1	NA	NA	NA	1421	NM_010681	16775	Mm.258065	NM_010681	ENSMUSG00000019846	Lama4	-	laminin, alpha 4	protein-coding	0.010000	0.442786	
mm_124251.1	chr14	101729613	101729813	-	1	NA	NA	NA	-215	NM_201529	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.075000	0.656716	
mm_107494.1	chr12	38783541	38783741	+	1	NA	NA	NA	-70	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.015000	0.457711	
mm_14175.1	chr2	126717950	126718150	+	1	NA	NA	NA	10722	NM_019729	84092	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	0.010000	0.358209	
mm_138517.1	chr17	35237829	35238029	+	1	NA	NA	NA	1333	NM_023179	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.020000	0.497512	
mm_71252.1	chr8	40916442	40916642	+	1	NA	NA	NA	-9691	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.030000	0.492537	
mm_59920.1	chr7	30421633	30421833	+	1	NA	NA	NA	-1571	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.115000	0.691542	
mm_126238.1	chr15	78987012	78987212	+	1	NA	NA	NA	4056	NM_001024716	110253	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.020000	0.597015	
mm_137666.1	chr17	28699516	28699716	+	1	NA	NA	NA	7048	NM_001168513	26416	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.000000	0.353234	
mm_91551.1	chr10	39899073	39899273	-	1	NA	NA	NA	65	NR_033628	213332	Mm.484359	NR_033628		Mfsd4b4	AA474331	major facilitator superfamily domain containing 4B4	pseudo	0.110000	0.746269	
mm_141203.1	chr17	27038342	27038542	-	1	NA	NA	NA	9183	NM_027544	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.025000	0.636816	
mm_31026.1	chr4	40853213	40853413	+	1	NA	NA	NA	1224	NM_022305	14595	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0.020000	0.527363	
mm_48930.1	chr6	4530859	4531059	+	1	NA	NA	NA	25341	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.020000	0.507463	
mm_96710.1	chr11	69655749	69655949	+	1	NA	NA	NA	812	NM_009235	20670	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0.020000	0.587065	
mm_35091.1	chr4	8238941	8239141	-	1	NA	NA	NA	0	NM_007592	12319	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	0.110000	0.716418	
mm_84319.1	chr9	63757849	63758049	-	1	NA	NA	NA	45	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.110000	0.686567	
mm_83600.1	chr9	48495170	48495370	-	1	NA	NA	NA	60	NM_001326355	67010	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	0.095000	0.656716	
mm_43110.1	chr5	124541206	124541406	+	1	NA	NA	NA	515	NM_019770	56334	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	0.150000	0.751244	
mm_25971.1	chr3	132865772	132865972	+	1	NA	NA	NA	12724	NR_102297	101243624	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	0.015000	0.462687	
mm_55898.1	chr6	83572351	83572551	-	1	NA	NA	NA	53	NM_024239	70527	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0.070000	0.611940	
mm_53327.1	chr6	129230408	129230608	+	1	NA	NA	NA	7537	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.000000	0.407960	
mm_14101.1	chr2	125247626	125247826	+	1	NA	NA	NA	211	NM_023595	110074	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0.120000	0.671642	
mm_50117.1	chr6	41534792	41534992	+	1	NA	NA	NA	13116	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.025000	0.497512	
mm_99503.1	chr11	103028248	103028448	+	1	NA	NA	NA	-214	NM_008707	18107	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.065000	0.542289	-44(CACCCTATAAGG,-,0.00),-42(CCCTATAAGGCG,+,0.00)
mm_53296.1	chr6	129036648	129036848	+	1	NA	NA	NA	-9153	NR_024262	232408	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.000000	0.537313	
mm_97199.1	chr11	75594816	75595016	+	1	NA	NA	NA	5315	NR_110477	654359	Mm.439961	NR_110477		Gm12338	OTTMUSG00000006216	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.010000	0.472637	
mm_146701.1	chr18	13726635	13726835	-	1	NA	NA	NA	245998	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.020000	0.417910	
mm_127036.1	chr15	96474788	96474988	+	1	NA	NA	NA	-14045	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.040000	0.552239	
mm_123579.1	chr14	67007988	67008188	-	1	NA	NA	NA	789	NM_009761	12177	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0.010000	0.398010	
mm_8581.1	chr1	155861322	155861522	-	1	NA	NA	NA	-48523	NM_001024945	104009	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx	quiescin Q6 sulfhydryl oxidase 1	protein-coding	0.005000	0.427861	-10(TCTTTTAAACTA,+,0.00),15(CCCTATATACAG,+,0.00)
mm_97708.1	chr11	80178561	80178761	+	1	NA	NA	NA	-5211	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.020000	0.557214	
mm_4240.1	chr1	171388984	171389184	+	1	NA	NA	NA	124	NM_001005508	226652	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	0.030000	0.661692	
mm_43363.1	chr5	135351813	135352013	+	1	NA	NA	NA	-1382	NM_001346745	215061	Mm.261834	NM_178240	ENSMUSG00000053388	Trim50	-	tripartite motif-containing 50	protein-coding	0.020000	0.601990	
mm_135490.1	chr16	46120028	46120228	-	1	NA	NA	NA	120	NM_032465	84544	Mm.29204	NM_032465	ENSMUSG00000022657	Cd96	1700109I12Rik|Tactile	CD96 antigen	protein-coding	0.030000	0.467662	
mm_54034.1	chr6	12748975	12749175	-	1	NA	NA	NA	178	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding	0.075000	0.611940	
mm_100314.1	chr11	117986808	117987008	+	1	NA	NA	NA	51	NM_133757	74451	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.135000	0.756219	
mm_109439.1	chr12	110698979	110699179	+	1	NA	NA	NA	-2684	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.050000	0.597015	
mm_13335.1	chr2	102786223	102786423	+	1	NA	NA	NA	79885	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.010000	0.447761	
mm_24969.1	chr3	96727681	96727881	+	1	NA	NA	NA	170	NM_026406	67845	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.155000	0.751244	
mm_51823.1	chr6	89140903	89141103	+	1	NA	NA	NA	9	NR_121593	434065	Mm.333241	NM_001033491	ENSMUSG00000090254	Gm1965	AU018164|AU021089|AU023851|C86079	predicted gene 1965	ncRNA	0.015000	0.537313	
mm_130462.1	chr15	98608938	98609138	-	1	NA	NA	NA	-1405	NM_007405	11512	Mm.157091	NM_007405	ENSMUSG00000022994	Adcy6	AC6|mKIAA0422	adenylate cyclase 6	protein-coding	0.065000	0.701493	
mm_49272.1	chr6	17519680	17519880	+	1	NA	NA	NA	55823	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.010000	0.472637	
mm_94538.1	chr11	9125064	9125264	+	1	NA	NA	NA	6657	NM_001159402	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.010000	0.547264	
mm_2735.1	chr1	128244489	128244689	+	1	NA	NA	NA	408	NM_026390	67812	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0.090000	0.636816	
mm_31261.1	chr4	45184733	45184933	+	1	NA	NA	NA	-73	NM_001081172	666060	Mm.24783	NM_001081172	ENSMUSG00000035615	Frmpd1	BC031840|mKIAA0967	FERM and PDZ domain containing 1	protein-coding	0.155000	0.830846	
mm_48377.1	chr5	139716410	139716610	-	1	NA	NA	NA	19823	NM_174850	231830	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.040000	0.552239	
mm_156070.1	chrX	109161210	109161410	+	1	NA	NA	NA	-35446	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.005000	0.313433	
mm_30263.1	chr3	146770039	146770239	-	1	NA	NA	NA	99	NM_001164198	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.020000	0.417910	
mm_64221.1	chr7	141562191	141562391	+	1	NA	NA	NA	111	NM_007459	11772	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0.180000	0.776119	
mm_67799.1	chr7	98085396	98085596	-	1	NA	NA	NA	23752	NM_001256082	17921	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.035000	0.611940	
mm_170086.1	chr17	35506020	35506220	+	1	NA	NA	NA	88	NM_013633	18999	Mm.17031	NM_013633	ENSMUSG00000024406	Pou5f1	NF-A3|Oct-3|Oct-3/4|Oct-4|Oct3|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4	POU domain, class 5, transcription factor 1	protein-coding	0.035000	0.656716	
mm_4117.1	chr1	167689548	167689748	+	1	NA	NA	NA	90	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding	0.040000	0.567164	
mm_156316.1	chrX	136993195	136993395	+	1	NA	NA	NA	140	NM_001035509	66995	Mm.440155	NM_025893	ENSMUSG00000031428	Zcchc18	1500031H04Rik|Sizn2	zinc finger, CCHC domain containing 18	protein-coding	0.040000	0.621891	
mm_102277.1	chr11	55395437	55395637	-	1	NA	NA	NA	24543	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.020000	0.492537	
mm_19951.1	chr2	117330995	117331195	-	1	NA	NA	NA	11782	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.015000	0.358209	
mm_103170.1	chr11	70459581	70459781	-	1	NA	NA	NA	59	NM_001029929	574428	Mm.472771	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.110000	0.681592	
mm_85078.1	chr9	91364780	91364980	-	1	NA	NA	NA	919	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.105000	0.691542	
mm_105954.1	chr11	115321945	115322145	-	1	NA	NA	NA	-127	NM_176847	16470	Mm.451539	NM_176847	ENSMUSG00000045288	Ush1g	Sans|js	Usher syndrome 1G	protein-coding	0.055000	0.671642	
mm_19608.1	chr2	102739748	102739948	-	1	NA	NA	NA	33410	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.035000	0.557214	
mm_64984.1	chr7	16915922	16916122	-	1	NA	NA	NA	8010	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.030000	0.572139	13(CCCTTTATGCCC,+,0.00),21(GCCCCTTAAAAC,-,0.00)
mm_111690.1	chr12	103609697	103609897	-	1	NA	NA	NA	21647	NM_001301404	217847	Mm.29094	NM_144834	ENSMUSG00000061947	Serpina10	PZI|ZPI	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10	protein-coding	0.005000	0.457711	
mm_32542.1	chr4	109280283	109280483	+	1	NA	NA	NA	108	NM_007943	13858	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0.125000	0.731343	
mm_15156.1	chr2	154009007	154009207	+	1	NA	NA	NA	831	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.010000	0.472637	
mm_40332.1	chr5	43910798	43910998	+	1	NA	NA	NA	42089	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.010000	0.368159	
mm_57579.1	chr6	127149558	127149758	-	1	NA	NA	NA	32	NR_040273	77558	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.035000	0.626866	
mm_91203.1	chr10	21161262	21161462	-	1	NA	NA	NA	-378	NM_010848	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.070000	0.601990	
mm_41869.1	chr5	104459532	104459732	+	1	NA	NA	NA	175	NM_008861	18764	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	0.155000	0.766169	
mm_13507.1	chr2	109692434	109692634	+	1	NA	NA	NA	98	NM_001048141	12064	Mm.1442	NM_007540	ENSMUSG00000048482	Bdnf	-	brain derived neurotrophic factor	protein-coding	0.045000	0.537313	
mm_56876.1	chr6	118968039	118968239	-	1	NA	NA	NA	87981	NR_046053	74363	Mm.399403	NR_046053		4931430N09Rik	-	RIKEN cDNA 4931430N09 gene	ncRNA	0.010000	0.467662	
mm_138792.1	chr17	37492170	37492370	+	1	NA	NA	NA	-198	NM_146328	258325	Mm.484339	NM_146328	ENSMUSG00000090894	Olfr110	MOR249-2	olfactory receptor 110	protein-coding	0.000000	0.417910	
mm_138779.1	chr17	37270132	37270332	+	1	NA	NA	NA	-2	NM_013819	14991	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	0.040000	0.497512	
mm_22529.1	chr3	7686834	7687034	+	1	NA	NA	NA	-73174	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.000000	0.373134	
mm_30863.1	chr4	31616477	31616677	+	1	NA	NA	NA	-347530	NM_009316	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.005000	0.477612	
mm_50961.1	chr6	59208770	59208970	+	1	NA	NA	NA	0	NM_001081145	68140	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.150000	0.771144	
mm_164757.1	chr17	84137786	84137986	-	1	NA	NA	NA	50061	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.035000	0.542289	-46(CCTTTTATACTT,+,0.00),-34(GGCCATAAAGGC,-,0.00)
mm_74659.1	chr8	13548894	13549094	-	1	NA	NA	NA	13467	NM_025601	66501	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.025000	0.631841	
mm_77373.1	chr8	119830519	119830719	-	1	NA	NA	NA	9960	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.005000	0.467662	
mm_3962.1	chr1	164136119	164136319	+	1	NA	NA	NA	-15616	NM_007976	14067	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	0.040000	0.487562	
mm_152409.1	chr19	10604296	10604496	-	1	NA	NA	NA	-138	NM_145496	225913	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	0.020000	0.517413	
mm_107727.1	chr12	57230439	57230639	+	1	NA	NA	NA	114	NM_001164370	73490	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0.145000	0.696517	
mm_42548.1	chr5	116123514	116123714	+	1	NA	NA	NA	-40368	NM_001101546	545798	Mm.483995	NM_001101546	ENSMUSG00000079278	Tmem233	DSPB2|Gm13843|OTTMUSG00000014722	transmembrane protein 233	protein-coding	0.035000	0.442786	
mm_157632.1	chrX	56822407	56822607	-	1	NA	NA	NA	-182	NM_177293	320923	Mm.186745	NM_177293	ENSMUSG00000067878	Mtap7d3	4933424A10Rik|Map7d3	MAP7 domain containing 3	protein-coding	0.030000	0.512438	
mm_67953.1	chr7	100499299	100499499	-	1	NA	NA	NA	6041	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.010000	0.557214	
mm_124074.1	chr14	78616252	78616452	-	1	NA	NA	NA	12938	NM_001253766	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.010000	0.492537	
mm_120833.1	chr14	75176764	75176964	+	1	NA	NA	NA	40439	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.015000	0.492537	
mm_109186.1	chr12	108488111	108488311	+	1	NA	NA	NA	65395	NM_001043335	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.025000	0.532338	
mm_115703.1	chr13	14521712	14521912	-	1	NA	NA	NA	1414	NM_001081348	94253	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.010000	0.467662	
mm_29156.1	chr3	106014537	106014737	-	1	NA	NA	NA	9	NM_001200028	100503311	Mm.386825	NM_029604	ENSMUSG00000010136	Pifo	1700027A23Rik	primary cilia formation	protein-coding	0.005000	0.437811	
mm_84307.1	chr9	63666693	63666893	-	1	NA	NA	NA	64138	NM_025857	66939	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.020000	0.572139	
mm_103673.1	chr11	79146373	79146573	-	1	NA	NA	NA	-119	NM_013571	16706	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb	kinase suppressor of ras 1	protein-coding	0.110000	0.671642	
mm_94794.1	chr11	22971999	22972199	+	1	NA	NA	NA	94	NM_011663	22183	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.065000	0.532338	
mm_99755.1	chr11	106751147	106751347	+	1	NA	NA	NA	21	NM_001033435	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.025000	0.457711	
mm_149500.1	chr19	11913029	11913229	+	1	NA	NA	NA	730	NM_172635	225929	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	0.040000	0.537313	
mm_165020.1	chr19	31932258	31932458	+	1	NA	NA	NA	63597	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.015000	0.467662	
mm_121451.1	chr14	120478237	120478437	+	1	NA	NA	NA	-124	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.165000	0.781095	-31(TCTTATAGACCC,+,0.00)
mm_139230.1	chr17	47730763	47730963	+	1	NA	NA	NA	4021	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.025000	0.522388	
mm_130506.1	chr15	98845516	98845716	-	1	NA	NA	NA	-14108	NM_016781	19082	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.000000	0.532338	
mm_98692.1	chr11	96299043	96299243	+	1	NA	NA	NA	-28	NM_008269	15414	Mm.215	NM_008269	ENSMUSG00000000690	Hoxb6	Hox-2.2	homeobox B6	protein-coding	0.080000	0.592040	
mm_50131.1	chr6	41542451	41542651	+	1	NA	NA	NA	20775	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.422886	
mm_97706.1	chr11	80178179	80178379	+	1	NA	NA	NA	-5593	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.030000	0.527363	
mm_171194.1	chr3	46141243	46141443	+	1	NA	NA	NA	306598	NM_001101479	241989	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding	0.060000	0.636816	
mm_93032.1	chr10	88146802	88147002	-	1	NA	NA	NA	39	NM_029249	75317	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	0.095000	0.661692	
mm_101219.1	chr11	20140270	20140470	-	1	NA	NA	NA	-27419	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.005000	0.457711	
mm_113217.1	chr13	26769272	26769472	+	1	NA	NA	NA	793	NM_008232	15192	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	hepatoma derived growth factor-like 1	protein-coding	0.055000	0.646766	
mm_119819.1	chr14	54225982	54226182	+	1	NA	NA	NA	27847	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.497512	
mm_62172.1	chr7	97371497	97371697	+	1	NA	NA	NA	-20	NM_199035	381903	Mm.279683	NM_199035	ENSMUSG00000035704	Alg8	AI447372|Gm1089	asparagine-linked glycosylation 8 (alpha-1,3-glucosyltransferase)	protein-coding	0.075000	0.636816	-15(GCCTCTAAAGGC,-,0.00),-14(CCTCTAAAGGCC,+,0.00)
mm_124816.1	chr15	9071163	9071363	+	1	NA	NA	NA	3	NM_001040395	68646	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.070000	0.666667	
mm_161105.1	chr12	102840152	102840352	-	1	NA	NA	NA	38154	NM_172806	238386	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	0.010000	0.383085	
mm_91954.1	chr10	61099999	61100199	-	1	NA	NA	NA	10768	NM_025273	13180	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.010000	0.487562	
mm_21953.1	chr2	167111592	167111792	-	1	NA	NA	NA	46399	NR_028540	100217443		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.005000	0.363184	
mm_71675.1	chr8	60863746	60863946	+	1	NA	NA	NA	-26605	NM_028299	72612	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.005000	0.323383	
mm_160976.1	chr11	101078069	101078269	+	1	NA	NA	NA	-242	NM_010475	15485	Mm.188939	NM_010475	ENSMUSG00000019301	Hsd17b1	17HSDB1|17beta-HSD|E2DH|Hsd17ba	hydroxysteroid (17-beta) dehydrogenase 1	protein-coding	0.015000	0.462687	
mm_105650.1	chr11	107137631	107137831	-	1	NA	NA	NA	-5809	NM_176850	207165	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0.030000	0.462687	
mm_133634.1	chr16	91659425	91659625	+	1	NA	NA	NA	11701	NM_178880	20658	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	0.005000	0.412935	10(CCCTAAAGAGAG,+,0.00)
mm_137472.1	chr17	26699196	26699396	+	1	NA	NA	NA	-16354	NM_029870	77128	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	0.020000	0.482587	
mm_92367.1	chr10	75993951	75994151	-	1	NA	NA	NA	-14875	NR_105836	102466646		NR_105836	ENSMUSG00000098817	Mir6409	Gm27787|mmu-mir-6409	microRNA 6409	ncRNA	0.020000	0.557214	
mm_67445.1	chr7	80389722	80389922	-	1	NA	NA	NA	-1876	NM_010194	14159	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.000000	0.452736	
mm_6758.1	chr1	84059010	84059210	-	1	NA	NA	NA	159851	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.427861	
mm_2094.1	chr1	87701162	87701362	+	1	NA	NA	NA	-54749	NM_029846	77040	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.005000	0.537313	
mm_20805.1	chr2	144270758	144270958	-	1	NA	NA	NA	44	NM_001199188	69178	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	0.160000	0.706468	
mm_83933.1	chr9	56635895	56636095	-	1	NA	NA	NA	-347	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.090000	0.666667	
mm_55596.1	chr6	71632775	71632975	-	1	NA	NA	NA	42	NM_001038695	104263	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0.100000	0.701493	
mm_114793.1	chr13	89540755	89540955	+	1	NA	NA	NA	219	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.030000	0.532338	
mm_52913.1	chr6	122826574	122826774	+	1	NA	NA	NA	-4703	NR_106090	102465710		NR_106090	ENSMUSG00000106580	Mir7231	mmu-mir-7231	microRNA 7231	ncRNA	0.025000	0.547264	-6(GAGCTTTAAAGG,-,0.00),-4(GCTTTAAAGGTG,+,0.00)
mm_14480.1	chr2	131514441	131514641	+	1	NA	NA	NA	22679	NM_001177838	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.000000	0.477612	44(GAGCTTATAAGG,-,0.00),46(GCTTATAAGGTC,+,0.00)
mm_40813.1	chr5	71729094	71729294	+	1	NA	NA	NA	29178	NM_008069	14400	Mm.38567	NM_008069	ENSMUSG00000029212	Gabrb1	AW061132|B230208N19Rik|Gabrb-1	gamma-aminobutyric acid (GABA) A receptor, subunit beta 1	protein-coding	0.015000	0.348259	53(GACCCTAAAGGC,-,0.00),71(CCTCTAAGAGCC,+,0.00)
mm_49313.1	chr6	18170690	18170890	+	1	NA	NA	NA	103	NM_021050	12638	Mm.15621	NM_021050	ENSMUSG00000041301	Cftr	AW495489|Abcc7	cystic fibrosis transmembrane conductance regulator	protein-coding	0.025000	0.487562	
mm_61895.1	chr7	90029069	90029269	+	1	NA	NA	NA	10	NR_110364	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	0.010000	0.452736	-43(GACCTTTAAAAG,-,0.00),-42(ACCTTTAAAAGG,-,0.00),-41(CCTTTAAAAGGA,+,0.00),66(GCTTATAAAGGG,+,0.00),66(GCTTATAAAGGG,-,0.00)
mm_20319.1	chr2	127318128	127318328	-	1	NA	NA	NA	-17931	NM_010090	13537	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.005000	0.457711	
mm_171529.1	chr4	146611080	146611280	+	1	NA	NA	NA	-64307	NR_045468	67524	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	0.025000	0.552239	11(CCTTTTCTGCCG,+,0.00)
mm_81016.1	chr9	104116005	104116205	+	1	NA	NA	NA	10538	NM_145700	252837	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	0.005000	0.412935	
mm_163162.1	chr11	85170971	85171171	+	1	NA	NA	NA	-25	NM_028589	73634	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0.005000	0.567164	
mm_42374.1	chr5	114928091	114928291	+	1	NA	NA	NA	4951	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.015000	0.532338	
mm_100259.1	chr11	117332216	117332416	+	1	NA	NA	NA	3	NM_001113488	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.060000	0.676617	
mm_128146.1	chr15	31601432	31601632	-	1	NA	NA	NA	272	NM_007637	12465	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	0.095000	0.681592	
mm_14303.1	chr2	129100933	129101133	+	1	NA	NA	NA	37	NM_009086	20017	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	0.070000	0.646766	
mm_158631.1	chrX	153262777	153262977	-	1	NA	NA	NA	24832	NM_173780	245671	Mm.260751	NM_173780	ENSMUSG00000041649	Klf8	A830097P10Rik|BKLF3|ZNF74	Kruppel-like factor 8	protein-coding	0.005000	0.368159	
mm_51835.1	chr6	90301134	90301334	+	1	NA	NA	NA	-36	NM_177738	243535	Mm.233854	NM_177738	ENSMUSG00000049694	BC048671	-	cDNA sequence BC048671	protein-coding	0.005000	0.457711	
mm_76343.1	chr8	84723688	84723888	-	1	NA	NA	NA	22331	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.030000	0.621891	
mm_86207.1	chr9	119983671	119983871	-	1	NA	NA	NA	887	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.160000	0.796020	
mm_160171.1	chr7	45181174	45181374	+	1	NA	NA	NA	279	NM_053256	114640	Mm.207078	NM_053256	ENSMUSG00000038300	Pth2	Tifp39|Tip39	parathyroid hormone 2	protein-coding	0.020000	0.621891	
mm_153471.1	chr19	41273143	41273343	-	1	NA	NA	NA	-9239	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.005000	0.457711	
mm_65359.1	chr7	25000630	25000830	-	1	NA	NA	NA	5207	NM_001290469	232975	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.025000	0.567164	
mm_164648.1	chr17	35534034	35534234	-	1	NA	NA	NA	933	NM_020576	57390	Mm.34201	NM_020576	ENSMUSG00000024409	Psors1c2	AI448740|Pcg|SPR1	psoriasis susceptibility 1 candidate 2 (human)	protein-coding	0.010000	0.636816	
mm_13932.1	chr2	121008397	121008597	+	1	NA	NA	NA	89	NM_010761	17151	Mm.7838	NM_010761	ENSMUSG00000023572	Ccndbp1	AU022347|DIP1|GCIP|Maid|SECC-8|SSEC-8	cyclin D-type binding-protein 1	protein-coding	0.080000	0.616915	
mm_145516.1	chr18	60443132	60443332	+	1	NA	NA	NA	58751	NM_134133	106878	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.000000	0.412935	
mm_58460.1	chr7	3365864	3366064	+	1	NA	NA	NA	-28078	NM_133190	81905	Mm.357990	NM_133190	ENSMUSG00000053395	Cacng8	-	calcium channel, voltage-dependent, gamma subunit 8	protein-coding	0.030000	0.547264	
mm_170156.1	chr17	47141080	47141280	+	1	NA	NA	NA	238	NM_001097623	224829	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.060000	0.631841	
mm_6652.1	chr1	79762337	79762537	-	1	NA	NA	NA	-668	NM_027057	69368	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	0.015000	0.507463	
mm_30981.1	chr4	34893634	34893834	+	1	NA	NA	NA	-45	NM_009889	12640	Mm.1361	NM_009889	ENSMUSG00000028298	Cga	CG-alpha|FSHA|GPHA1|GPHalpha|HCG|LHA|Tsha|aGSU|alpha-GSU|alphaGSU|alphaSU	glycoprotein hormones, alpha subunit	protein-coding	0.005000	0.432836	12(TGGTATAAAAGA,-,0.00)
mm_156953.1	chrX	169987572	169987772	+	1	NA	NA	NA	-8755	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.095000	0.606965	
mm_85267.1	chr9	99426033	99426233	-	1	NA	NA	NA	10579	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.015000	0.358209	
mm_86492.1	chr10	5593716	5593916	+	1	NA	NA	NA	88	NM_026793	68632	Mm.338242	NM_026793	ENSMUSG00000046916	Myct1	1110020B04Rik|AI225941|AI642973|Mtmc1	myc target 1	protein-coding	0.015000	0.417910	-90(CCTTTTATGTAA,+,0.00)
mm_171978.1	chr5	89689103	89689303	-	1	NA	NA	NA	72767	NR_037571	631105	Mm.7732	NR_037571		Gm7056	Gm149	predicted gene 7056	ncRNA	0.010000	0.383085	
mm_107503.1	chr12	38998444	38998644	+	1	NA	NA	NA	214833	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.030000	0.442786	
mm_134414.1	chr16	17722359	17722559	-	1	NA	NA	NA	441	NM_001285886	94112	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.050000	0.457711	
mm_135487.1	chr16	46038513	46038713	-	1	NA	NA	NA	-28200	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.010000	0.402985	-29(GGGCCTAAAGGC,-,0.00)
mm_22458.1	chr3	3188015	3188215	+	1	NA	NA	NA	-319915	NM_013920	30942	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.000000	0.388060	
mm_95811.1	chr11	55110307	55110507	+	1	NA	NA	NA	12422	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.005000	0.407960	
mm_119696.1	chr14	53634726	53634926	+	1	NA	NA	NA	619103	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.572139	
mm_154186.1	chr19	58794346	58794546	-	1	NA	NA	NA	-32	NM_026208	67507	Mm.27027	NM_026208	ENSMUSG00000026931	1700019N19Rik	-	RIKEN cDNA 1700019N19 gene	protein-coding	0.030000	0.611940	
mm_71223.1	chr8	40899186	40899386	+	1	NA	NA	NA	-26947	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.040000	0.467662	
mm_17745.1	chr2	32713465	32713665	-	1	NA	NA	NA	-593	NR_039536	100628606		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0.075000	0.666667	
mm_84788.1	chr9	77045560	77045760	-	1	NA	NA	NA	121	NR_136923	26944	Mm.23199	NM_012033	ENSMUSG00000032357	Tinag	AI452335|TIN-ag	tubulointerstitial nephritis antigen	protein-coding	0.010000	0.417910	
mm_139241.1	chr17	47733653	47733853	+	1	NA	NA	NA	-3284	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.025000	0.552239	
mm_76673.1	chr8	93535775	93535975	-	1	NA	NA	NA	-168	NM_001003951	67935	Mm.65457	NM_001003951	ENSMUSG00000058019	Ces5a	1700081L16Rik|1700122C07Rik|BB081581|Ces7|Gm503|cauxin	carboxylesterase 5A	protein-coding	0.025000	0.422886	
mm_53694.1	chr6	142751535	142751735	+	1	NA	NA	NA	-5051	NM_009908	12764	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.020000	0.502488	
mm_168313.1	chr11	109011882	109012082	-	1	NA	NA	NA	91633	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.080000	0.606965	
mm_84738.1	chr9	75373127	75373327	-	1	NA	NA	NA	25469	NM_013479	12049	Mm.25988	NM_013479	ENSMUSG00000032191	Bcl2l10	AA420380|AU023065|Boo|C85687|Diva	Bcl2-like 10	protein-coding	0.025000	0.577114	
mm_148300.1	chr18	82759687	82759887	-	1	NA	NA	NA	-748	NR_045389	76961	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.010000	0.547264	
mm_131708.1	chr16	20812236	20812436	+	1	NA	NA	NA	-77825	NM_009379	21832	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.025000	0.417910	
mm_88357.1	chr10	75936143	75936343	+	1	NA	NA	NA	670	NM_175329	103172	Mm.333849	NM_175329	ENSMUSG00000049422	Chchd10	1620401E04Rik|AI267078|Ndg2	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding	0.070000	0.651741	
mm_23199.1	chr3	41493262	41493462	+	1	NA	NA	NA	-163	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.015000	0.383085	
mm_72731.1	chr8	85081347	85081547	+	1	NA	NA	NA	484	NM_001001493	414077	Mm.35790	NM_001001493	ENSMUSG00000059355	Wdr83os	-	WD repeat domain 83 opposite strand	protein-coding	0.030000	0.587065	
mm_110655.1	chr12	59061308	59061508	-	1	NA	NA	NA	64	NM_001306218	78232	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	0.095000	0.716418	
mm_158831.1	chrX	168124229	168124429	-	1	NA	NA	NA	-1332	NM_001290427	333605	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	0.030000	0.567164	
mm_156138.1	chrX	128261627	128261827	+	1	NA	NA	NA	-525173	NM_001281537	73934	Mm.159093	NM_001281537	ENSMUSG00000043569	Cldn34c4	4930412D23Rik	claudin 34C4	protein-coding	0.030000	0.482587	
mm_147335.1	chr18	42899212	42899412	-	1	NA	NA	NA	194	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.055000	0.631841	
mm_34386.1	chr4	144922089	144922289	+	1	NA	NA	NA	29052	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.005000	0.542289	
mm_128217.1	chr15	36276698	36276898	-	1	NA	NA	NA	6349	NM_013923	30945	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0.000000	0.378109	
mm_1617.1	chr1	74391558	74391758	+	1	NA	NA	NA	49	NM_153088	227292	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.090000	0.661692	-28(GCCCTTTTAAGG,-,0.00),-27(CCCTTTTAAGGG,-,0.00),-26(CCTTTTAAGGGG,+,0.00)
mm_111572.1	chr12	101818761	101818961	-	1	NA	NA	NA	258	NM_011812	23876	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	0.090000	0.671642	
mm_161320.1	chr14	45220044	45220244	-	1	NA	NA	NA	427	NM_027518	70713	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	0.145000	0.716418	
mm_165644.1	chr3	82271706	82271906	+	1	NA	NA	NA	-86266	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0.000000	0.412935	
mm_126101.1	chr15	78244760	78244960	+	1	NA	NA	NA	49	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.015000	0.621891	
mm_55318.1	chr6	55132922	55133122	-	1	NA	NA	NA	-6	NM_001288618	12922	Mm.236081	NM_009953	ENSMUSG00000003476	Crhr2	CRF-R2|CRFR2alpha|CRFR2beta|Crfr2	corticotropin releasing hormone receptor 2	protein-coding	0.025000	0.616915	
mm_137511.1	chr17	27057211	27057411	+	1	NA	NA	NA	7	NM_080553	16440	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0.125000	0.771144	
mm_104879.1	chr11	99438051	99438251	-	1	NA	NA	NA	2	NM_023256	66809	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	0.025000	0.537313	-34(CTCTATAAAAGG,-,0.00)
mm_163575.1	chr13	31625392	31625592	-	1	NA	NA	NA	-324	NM_010225	14238	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	0.065000	0.646766	
mm_33509.1	chr4	130913268	130913468	+	1	NA	NA	NA	34	NM_010686	16792	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3	lysosomal-associated protein transmembrane 5	protein-coding	0.035000	0.562189	
mm_166238.1	chr5	71657820	71658020	+	1	NA	NA	NA	388	NM_010251	14397	Mm.248731	NM_010251	ENSMUSG00000029211	Gabra4	Gabra-4	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	protein-coding	0.120000	0.706468	
mm_114364.1	chr13	62015839	62016039	+	1	NA	NA	NA	-113951	NM_001039239	630579	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 80	protein-coding	0.030000	0.527363	
mm_122854.1	chr14	54864003	54864203	-	1	NA	NA	NA	55	NM_001177705	239099	Mm.280994	NM_183174	ENSMUSG00000057156	Homez	mKIAA1443	homeodomain leucine zipper-encoding gene	protein-coding	0.105000	0.726368	
mm_15546.1	chr2	158409752	158409952	+	1	NA	NA	NA	-1	NM_001291137	228850	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0.105000	0.661692	
mm_55271.1	chr6	53820808	53821008	-	1	NA	NA	NA	-83	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.075000	0.641791	
mm_141062.1	chr17	25785234	25785434	-	1	NA	NA	NA	4	NM_026897	68977	Mm.29230	NM_026897	ENSMUSG00000061046	Haghl	1500017E18Rik|2810014I23Rik|C330022E15Rik	hydroxyacylglutathione hydrolase-like	protein-coding	0.020000	0.582090	
mm_17420.1	chr2	27426450	27426650	-	1	NA	NA	NA	1058	NR_133905	22325	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.170000	0.820896	
mm_32185.1	chr4	101068911	101069111	+	1	NA	NA	NA	-27	NM_183024	242570	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.165000	0.805970	
mm_163199.1	chr11	96264222	96264422	+	1	NA	NA	NA	-842	NR_029721	387191		NR_029721	ENSMUSG00000065546	Mir196a-1	Mirn196|Mirn196a-1|miR-196|mir-196a-1	microRNA 196a-1	ncRNA	0.055000	0.577114	-86(GTCCCTAAAAGA,-,0.00)
mm_80531.1	chr9	80164983	80165183	+	1	NA	NA	NA	49	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.135000	0.741294	
mm_80508.1	chr9	78615759	78615959	+	1	NA	NA	NA	313	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.095000	0.701493	
mm_125889.1	chr15	75863187	75863387	+	1	NA	NA	NA	948	NM_026960	69146	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	0.025000	0.592040	
mm_113191.1	chr13	24943054	24943254	+	1	NA	NA	NA	2	NM_008156	14756	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0.030000	0.487562	-38(CACCATAAAAGC,-,0.00)
mm_69765.1	chr7	141009745	141009945	-	1	NA	NA	NA	899	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.020000	0.522388	
mm_29073.1	chr3	103859805	103860005	-	1	NA	NA	NA	110	NR_104070	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.020000	0.492537	
mm_72260.1	chr8	75096998	75097198	+	1	NA	NA	NA	3480	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.030000	0.621891	
mm_133996.1	chr16	4719037	4719237	-	1	NA	NA	NA	219	NM_001290763	67824	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	0.030000	0.552239	
mm_87707.1	chr10	60002705	60002905	+	1	NA	NA	NA	0	NM_026937	69090	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0.085000	0.661692	
mm_21320.1	chr2	157099170	157099370	-	1	NA	NA	NA	12215	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.015000	0.388060	
mm_35764.1	chr4	46138331	46138531	-	1	NA	NA	NA	44	NM_173033	272027	Mm.331588	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	0.105000	0.671642	
mm_163590.1	chr13	38580784	38580984	+	1	NA	NA	NA	-52060	NM_001289598	105245	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	0.020000	0.497512	
mm_128976.1	chr15	74832737	74832937	-	1	NA	NA	NA	8806	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.000000	0.343284	
mm_149504.1	chr19	11943338	11943538	+	1	NA	NA	NA	19710	NR_105960	102465601		NR_105960	ENSMUSG00000104979	Mir6994	mmu-mir-6994	microRNA 6994	ncRNA	0.010000	0.492537	
mm_93925.1	chr10	127145358	127145558	-	1	NA	NA	NA	-19698	NR_045166	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.005000	0.537313	-33(CACTATAAAAGG,-,0.00)
mm_164464.1	chr16	59505726	59505926	+	1	NA	NA	NA	34051	NM_025910	67014	Mm.289150	NM_025910	ENSMUSG00000022724	Mina	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204	myc induced nuclear antigen	protein-coding	0.010000	0.412935	64(CCCCTGAAAAGG,-,0.00)
mm_33531.1	chr4	130932265	130932465	+	1	NA	NA	NA	-12020	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.000000	0.452736	
mm_130648.1	chr15	100619932	100620132	-	1	NA	NA	NA	4370	NM_011873	23994	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0.005000	0.537313	
mm_137891.1	chr17	31680955	31681155	+	1	NA	NA	NA	3124	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.040000	0.601990	
mm_18464.1	chr2	62343871	62344071	-	1	NA	NA	NA	68260	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.000000	0.338308	
mm_24449.1	chr3	90612749	90612949	+	1	NA	NA	NA	-45	NM_011313	20200	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0.020000	0.527363	
mm_27092.1	chr3	30107598	30107798	-	1	NA	NA	NA	-94494	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.000000	0.253731	
mm_37393.1	chr4	121098046	121098246	-	1	NA	NA	NA	97	NM_172700	230709	Mm.34399	NM_172700	ENSMUSG00000043207	Zmpste24	A530043O15Rik|D030046F19|FACE1|Face-1|MADB|STE24|Ste24p	zinc metallopeptidase, STE24	protein-coding	0.055000	0.542289	
mm_71297.1	chr8	41239516	41239716	+	1	NA	NA	NA	-143	NM_023662	18536	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	0.130000	0.686567	
mm_123061.1	chr14	55671764	55671964	-	1	NA	NA	NA	42	NM_008683	18002	Mm.296566	NM_008683	ENSMUSG00000010376	Nedd8	Rub1	neural precursor cell expressed, developmentally down-regulated gene 8	protein-coding	0.050000	0.587065	
mm_75445.1	chr8	47632715	47632915	-	1	NA	NA	NA	42344	NM_023503	69260	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.065000	0.437811	-86(GCTTTAATGGAT,+,0.00)
mm_131707.1	chr16	20733031	20733231	+	1	NA	NA	NA	4	NM_009893	12667	Mm.20457	NM_009893	ENSMUSG00000006958	Chrd	Chd	chordin	protein-coding	0.105000	0.796020	
mm_343.1	chr1	30949773	30949973	+	1	NA	NA	NA	-118	NM_011200	19243	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	0.155000	0.721393	-94(CCCTTTATAGCC,+,0.00)
mm_7865.1	chr1	132624382	132624582	-	1	NA	NA	NA	18376	NM_001160316	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	0.005000	0.358209	
mm_22754.1	chr3	19974873	19975073	+	1	NA	NA	NA	17919	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.010000	0.467662	
mm_114481.1	chr13	69611438	69611638	+	1	NA	NA	NA	-75	NM_175283	78925	Mm.451912	NM_175283	ENSMUSG00000021594	Srd5a1	0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1	steroid 5 alpha-reductase 1	protein-coding	0.090000	0.641791	
mm_149314.1	chr19	10784128	10784328	+	1	NA	NA	NA	43281	NR_027805	403202	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0.010000	0.452736	-35(GCCTATTTATAG,-,0.00),-33(CTATTTATAGAA,+,0.00)
mm_69624.1	chr7	137314212	137314412	-	1	NA	NA	NA	133	NM_001113415	13593	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.145000	0.731343	
mm_111623.1	chr12	102421348	102421548	-	1	NA	NA	NA	18365	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.010000	0.487562	
mm_159504.1	chr4	44167430	44167630	-	1	NA	NA	NA	8	NM_175201	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.135000	0.726368	
mm_125567.1	chr15	59275315	59275515	+	1	NA	NA	NA	-31533	NR_045613	100416830	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0.005000	0.487562	
mm_37603.1	chr4	126752683	126752883	-	1	NA	NA	NA	646	NM_011986	26562	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	0.025000	0.621891	
mm_122924.1	chr14	54960962	54961162	-	1	NA	NA	NA	5545	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.030000	0.592040	
mm_158565.1	chrX	150457278	150457478	-	1	NA	NA	NA	1772	NM_001164683	382245	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding	0.005000	0.402985	
mm_120603.1	chr14	70081059	70081259	+	1	NA	NA	NA	3364	NM_001289927	13655	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.015000	0.333333	
mm_26827.1	chr3	10351228	10351428	-	1	NA	NA	NA	-11	NM_001331014	66361	Mm.371617	NM_025512	ENSMUSG00000039795	Zfand1	2310008M20Rik|AW048890	zinc finger, AN1-type domain 1	protein-coding	0.085000	0.716418	
mm_169117.1	chr13	50021617	50021817	-	1	NA	NA	NA	228591	NM_001033438	380882	Mm.425809	NM_001033438	ENSMUSG00000095300	Gm906	-	predicted gene 906	protein-coding	0.025000	0.482587	
mm_81410.1	chr9	109052746	109052946	+	1	NA	NA	NA	-2020	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.010000	0.572139	
mm_162613.1	chr1	183345271	183345471	-	1	NA	NA	NA	24194	NM_177389	338366	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	0.125000	0.696517	
mm_31364.1	chr4	47287732	47287932	+	1	NA	NA	NA	-65390	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.005000	0.462687	
mm_78713.1	chr9	41447008	41447208	+	1	NA	NA	NA	-27785	NR_131931	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.010000	0.472637	
mm_133808.1	chr16	95701969	95702169	+	1	NA	NA	NA	-338	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.060000	0.611940	
mm_75787.1	chr8	70095090	70095290	-	1	NA	NA	NA	7396	NR_106033	102465646		NR_106033	ENSMUSG00000099042	Mir7066	Gm27290|mmu-mir-7066	microRNA 7066	ncRNA	0.025000	0.517413	
mm_158323.1	chrX	133898306	133898506	-	1	NA	NA	NA	23	NM_019656	56496	Mm.46701	NM_019656	ENSMUSG00000067377	Tspan6	6720473L21Rik|AI316786|T245|TSPAN-6|Tm4sf|Tm4sf6	tetraspanin 6	protein-coding	0.085000	0.552239	
mm_88975.1	chr10	81461466	81461666	+	1	NA	NA	NA	11565	NM_001311127	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.010000	0.422886	-73(CCTTTTAAAATC,+,0.00)
mm_31369.1	chr4	47353122	47353322	+	1	NA	NA	NA	0	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.135000	0.781095	
mm_42767.1	chr5	121220310	121220510	+	1	NA	NA	NA	191	NM_181421	269700	Mm.184589	NM_181421	ENSMUSG00000042744	Gm15800	A130010L24|AU042671|BC019639|EG545802|OTTMUSG00000026283|mKIAA0614	predicted gene 15800	protein-coding	0.175000	0.805970	
mm_148892.1	chr19	6906605	6906805	+	1	NA	NA	NA	2940	NM_012021	54683	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.020000	0.497512	
mm_24366.1	chr3	90087327	90087527	+	1	NA	NA	NA	7906	NM_001293749	59069	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0.020000	0.447761	52(GGCTCTAAAAGA,-,0.00)
mm_37567.1	chr4	126237725	126237925	-	1	NA	NA	NA	18494	NM_144941	245877	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0.010000	0.552239	
mm_48382.1	chr5	139774297	139774497	-	1	NA	NA	NA	1281	NM_026748	68510	Mm.292942	NM_026748	ENSMUSG00000029547	Ints1	1110015K06Rik	integrator complex subunit 1	protein-coding	0.045000	0.606965	
mm_54908.1	chr6	47636803	47637003	-	1	NA	NA	NA	18191	NR_002841	19799		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.015000	0.422886	
mm_12694.1	chr2	76383471	76383671	+	1	NA	NA	NA	13587	NM_153405	241490	Mm.33310	NM_153405	ENSMUSG00000042369	Rbm45	Drb1|Drbp1|G430095G15Rik	RNA binding motif protein 45	protein-coding	0.015000	0.343284	
mm_42828.1	chr5	122100879	122101079	+	1	NA	NA	NA	-1	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.015000	0.557214	
mm_150766.1	chr19	44242223	44242423	+	1	NA	NA	NA	39035	NM_024450	30049	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	0.000000	0.462687	
mm_19856.1	chr2	113828990	113829190	-	1	NA	NA	NA	1	NM_009162	20394	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	0.055000	0.626866	
mm_29214.1	chr3	107037953	107038153	-	1	NA	NA	NA	-1451	NR_033498	229694	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	0.010000	0.422886	
mm_74693.1	chr8	15018831	15019031	-	1	NA	NA	NA	7906	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.030000	0.457711	
mm_67458.1	chr7	80402697	80402897	-	1	NA	NA	NA	15	NM_011046	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.190000	0.855721	
mm_20818.1	chr2	144550721	144550921	-	1	NA	NA	NA	38	NM_015754	26450	Mm.440564	NM_015754	ENSMUSG00000027428	Rbbp9	Bog	retinoblastoma binding protein 9	protein-coding	0.040000	0.577114	
mm_45520.1	chr5	72587450	72587650	-	1	NA	NA	NA	0	NM_001024147	545758	Mm.332426	NM_001024147	ENSMUSG00000060204	Gm5868	EG545758	predicted gene 5868	protein-coding	0.095000	0.671642	
mm_157071.1	chrX	8203099	8203299	-	1	NA	NA	NA	3326	NM_145907	53627	Mm.443425	NM_016913	ENSMUSG00000031169	Porcn	2410004O13Rik|AW045557|DXHXS7465e|Mg61|Mporc|Ppn|mMg61|porc	porcupine homolog (Drosophila)	protein-coding	0.045000	0.636816	
mm_158530.1	chrX	143861201	143861401	-	1	NA	NA	NA	-33889	NM_007603	12338	Mm.30290	NM_007603	ENSMUSG00000067276	Capn6	-	calpain 6	protein-coding	0.000000	0.343284	
mm_74254.1	chr8	124862565	124862765	+	1	NA	NA	NA	364	NM_025615	66523	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	0.030000	0.467662	
mm_2463.1	chr1	105356752	105356952	+	1	NA	NA	NA	-142	NM_001160368	320311	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	0.070000	0.646766	
mm_4125.1	chr1	169969341	169969541	+	1	NA	NA	NA	32	NR_040438	67303	Mm.396611	NR_040438	ENSMUSG00000097503	3110045C21Rik	AI838577	RIKEN cDNA 3110045C21 gene	ncRNA	0.040000	0.567164	
mm_90559.1	chr10	128194508	128194708	+	1	NA	NA	NA	-27	NM_001285777	216456	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	0.105000	0.771144	
mm_132651.1	chr16	41532984	41533184	+	1	NA	NA	NA	258	NM_001347236	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.020000	0.507463	
mm_66893.1	chr7	59315286	59315486	-	1	NA	NA	NA	8763	NR_015479	330544	Mm.9002	NR_015479	ENSMUSG00000100826	C230091D08Rik	-	RIKEN cDNA C230091D08 gene	ncRNA	0.000000	0.313433	29(CCTTTTATGACA,+,0.00)
mm_53375.1	chr6	129471551	129471751	+	1	NA	NA	NA	1128	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.015000	0.368159	
mm_51210.1	chr6	71338561	71338761	+	1	NA	NA	NA	15849	NM_009858	12526	Mm.333148	NM_009858	ENSMUSG00000053044	Cd8b1	Cd8b|Ly-3|Ly-C|Lyt-3	CD8 antigen, beta chain 1	protein-coding	0.010000	0.442786	-91(CTGTTTTAAAGA,-,0.00)
mm_166141.1	chr4	156327462	156327662	-	1	NA	NA	NA	-3541	NR_028141	22314	Mm.458976	NM_009494	ENSMUSG00000057021	Vmn2r-ps159	V2r8|V2r9|Vmn2r-ps160	vomeronasal 2, receptor, pseudogene 159	pseudo	0.030000	0.487562	
mm_69400.1	chr7	132316996	132317196	-	1	NA	NA	NA	59	NM_029935	77590	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.090000	0.671642	
mm_173184.1	chrX	59284011	59284211	+	1	NA	NA	NA	-118023	NM_001290415	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding	0.060000	0.636816	
mm_10048.1	chr1	193197800	193198000	-	1	NA	NA	NA	3646	NM_153137	215243	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	0.060000	0.611940	
mm_122565.1	chr14	50381277	50381477	-	1	NA	NA	NA	-11381	NM_146666	258660	Mm.377623	NM_146666	ENSMUSG00000047716	Olfr736	MOR106-5	olfactory receptor 736	protein-coding	0.050000	0.447761	-40(CATTTTAAAGCC,+,0.00)
mm_171690.1	chr4	65124667	65124867	+	1	NA	NA	NA	593	NM_021362	18491	Mm.317854	NM_021362	ENSMUSG00000028370	Pappa	8430414N03Rik|IGFBP-4ase|PAG1|PAPP-A	pregnancy-associated plasma protein A	protein-coding	0.175000	0.820896	
mm_38141.1	chr4	134767831	134768031	-	1	NA	NA	NA	73	NM_145554	100017	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.150000	0.741294	
mm_7994.1	chr1	134304736	134304936	-	1	NA	NA	NA	14832	NM_031189	17928	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	0.030000	0.547264	
mm_88843.1	chr10	80900318	80900518	+	1	NA	NA	NA	551	NM_013895	30055	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0.090000	0.656716	
mm_139045.1	chr17	46248075	46248275	+	1	NA	NA	NA	95	NM_145353	28064	Mm.248769	NM_145353	ENSMUSG00000071074	Yipf3	C6orf109|D17Wsu94e|KLIP1	Yip1 domain family, member 3	protein-coding	0.135000	0.716418	
mm_8238.1	chr1	138304064	138304264	-	1	NA	NA	NA	30426	NM_177397	338375	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.000000	0.432836	
mm_165335.1	chr2	114055161	114055361	+	1	NA	NA	NA	865	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.030000	0.512438	
mm_100029.1	chr11	114923723	114923923	+	1	NA	NA	NA	10563	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.020000	0.537313	
mm_113832.1	chr13	47105482	47105682	+	1	NA	NA	NA	639	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.050000	0.547264	
mm_127896.1	chr15	9155323	9155523	-	1	NA	NA	NA	2	NM_001285980	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.000000	0.482587	-34(CTGTTTAAAAGG,-,0.00)
mm_114746.1	chr13	84222093	84222293	+	1	NA	NA	NA	-18	NR_138587	320919	Mm.131386	NR_138587	ENSMUSG00000097292	A230107N01Rik	-	RIKEN cDNA A230107N01 gene	ncRNA	0.095000	0.721393	
mm_37588.1	chr4	126440689	126440889	-	1	NA	NA	NA	-11247	NM_153402	214150	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0.005000	0.492537	-34(CCTTATATAGAC,+,0.00)
mm_89873.1	chr10	108268523	108268723	+	1	NA	NA	NA	-63566	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.010000	0.398010	50(GGCTAGAAAAGG,-,0.00)
mm_89243.1	chr10	87858544	87858744	+	1	NA	NA	NA	379	NM_001314010	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.005000	0.522388	
mm_10455.1	chr2	14288994	14289194	+	1	NA	NA	NA	28091	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.015000	0.482587	
mm_112866.1	chr13	20849422	20849622	+	1	NA	NA	NA	55409	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.402985	
mm_53486.1	chr6	135078590	135078790	+	1	NA	NA	NA	13028	NM_181444	232431	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	0.045000	0.572139	
mm_64037.1	chr7	140770892	140771092	+	1	NA	NA	NA	7160	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.005000	0.437811	
mm_103663.1	chr11	79047390	79047590	-	1	NA	NA	NA	23893	NR_045873	790910	Mm.440410	NR_045873		Gm11201	ENSMUSG00000072637|OTTMUSG00000000169	predicted gene 11201	ncRNA	0.015000	0.631841	
mm_66264.1	chr7	35754289	35754489	-	1	NA	NA	NA	65	NM_178704	233115	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0.090000	0.696517	
mm_23541.1	chr3	61363830	61364030	+	1	NA	NA	NA	-577	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.040000	0.592040	
mm_160466.1	chr8	111081917	111082117	-	1	NA	NA	NA	-309	NM_181549	353287	Mm.135495	NM_181549	ENSMUSG00000033633	Clec18a	Mrcl	C-type lectin domain family 18, member A	protein-coding	0.005000	0.577114	
mm_66504.1	chr7	45091624	45091824	-	1	NA	NA	NA	489	NM_026555	52377	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0.045000	0.592040	-94(GCTTTTATCGGC,+,0.00)
mm_35311.1	chr4	25281716	25281916	-	1	NA	NA	NA	5	NM_026194	67490	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	0.115000	0.691542	
mm_10042.1	chr1	193035590	193035790	-	1	NA	NA	NA	85	NM_001301370	329324	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	0.090000	0.696517	
mm_19537.1	chr2	94438021	94438221	-	1	NA	NA	NA	65	NM_007466	11800	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0.160000	0.726368	
mm_41266.1	chr5	89050689	89050889	+	1	NA	NA	NA	163529	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.000000	0.393035	
mm_164107.1	chr15	26610699	26610899	-	1	NA	NA	NA	284765	NM_176959	448987	Mm.253378	NM_176959	ENSMUSG00000043556	Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding	0.005000	0.318408	
mm_10833.1	chr2	24394699	24394899	+	1	NA	NA	NA	9402	NM_177611	215632	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.005000	0.532338	
mm_30687.1	chr4	11485856	11486056	+	1	NA	NA	NA	-2	NM_001081183	66185	Mm.331487	NM_001081183	ENSMUSG00000040720	1110037F02Rik	4930422M05Rik|Kiaa1429|mKIAA1429	RIKEN cDNA 1110037F02 gene	protein-coding	0.080000	0.651741	
mm_50995.1	chr6	63257818	63258018	+	1	NA	NA	NA	1061	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.040000	0.497512	
mm_9994.1	chr1	191396480	191396680	-	1	NA	NA	NA	461	NM_144880	226849	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0.185000	0.845771	
mm_89725.1	chr10	98917456	98917656	+	1	NA	NA	NA	2404	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.010000	0.348259	
mm_126644.1	chr15	83784237	83784437	+	1	NA	NA	NA	4314	NM_172610	223726	Mm.36395	NM_172610	ENSMUSG00000041708	Mpped1	6230403M19|AW456965|D15Bwg0669e	metallophosphoesterase domain containing 1	protein-coding	0.040000	0.517413	
mm_153037.1	chr19	31913979	31914179	-	1	NA	NA	NA	45318	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.010000	0.462687	
mm_92523.1	chr10	78591849	78592049	-	1	NA	NA	NA	15	NM_027875	71709	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	0.110000	0.691542	
mm_108040.1	chr12	73901281	73901481	+	1	NA	NA	NA	57	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.020000	0.472637	
mm_95670.1	chr11	53979931	53980131	+	1	NA	NA	NA	-4	NM_019723	56517	Mm.154284	NM_019723	ENSMUSG00000063652	Slc22a21	Octn3|Slc22a9	solute carrier family 22 (organic cation transporter), member 21	protein-coding	0.115000	0.651741	
mm_89728.1	chr10	98931041	98931241	+	1	NA	NA	NA	15989	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.010000	0.328358	
mm_108297.1	chr12	79209186	79209386	+	1	NA	NA	NA	373	NM_030017	77974	Mm.274373	NM_030017	ENSMUSG00000021123	Rdh12	-	retinol dehydrogenase 12	protein-coding	0.030000	0.497512	
mm_108739.1	chr12	88632174	88632374	+	1	NA	NA	NA	-162230	NM_001198587	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.000000	0.472637	
mm_129528.1	chr15	79283458	79283658	-	1	NA	NA	NA	1951	NM_177580	207495	Mm.309647	NM_177580	ENSMUSG00000018126	Baiap2l2	BC048937	BAI1-associated protein 2-like 2	protein-coding	0.010000	0.582090	
mm_91152.1	chr10	20505402	20505602	-	1	NA	NA	NA	42826	NM_001347366	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.030000	0.492537	26(GCATTTAAAGCA,+,0.00)
mm_96236.1	chr11	62551398	62551598	+	1	NA	NA	NA	-6	NR_002875	218963	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	0.095000	0.567164	-27(GCATAAATAGCG,+,0.00)
mm_101561.1	chr11	34008815	34009015	-	1	NA	NA	NA	-15722	NM_001190886	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.025000	0.447761	
mm_73080.1	chr8	94478608	94478808	+	1	NA	NA	NA	5945	NM_001033207	434341	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	0.020000	0.402985	
mm_65573.1	chr7	27195591	27195791	-	1	NA	NA	NA	69	NM_001046637	53607	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0.045000	0.537313	
mm_118183.1	chr13	107022238	107022438	-	1	NA	NA	NA	-224	NM_008442	16563	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	0.200000	0.850746	
mm_99427.1	chr11	102399721	102399921	+	1	NA	NA	NA	5166	NR_105895	102465561		NR_105895	ENSMUSG00000098774	Mir6930	Gm27436|mmu-mir-6930	microRNA 6930	ncRNA	0.085000	0.681592	
mm_16495.1	chr2	181187452	181187652	+	1	NA	NA	NA	209	NM_025598	66496	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0.065000	0.676617	
mm_75186.1	chr8	36953129	36953329	-	1	NA	NA	NA	-787	NM_001194940	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.015000	0.437811	
mm_152808.1	chr19	22992320	22992520	-	1	NA	NA	NA	-148806	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.005000	0.293532	
mm_169972.1	chr17	14057022	14057222	-	1	NA	NA	NA	108749	NM_001122977	635895	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.005000	0.532338	
mm_154253.1	chr19	60766701	60766901	-	1	NA	NA	NA	7584	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.050000	0.527363	
mm_102052.1	chr11	52099625	52099825	-	1	NA	NA	NA	901	NM_019411	19052	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.035000	0.447761	
mm_127719.1	chr15	103102122	103102322	+	1	NA	NA	NA	44606	NR_045743	432989	Mm.383979	NR_045743	ENSMUSG00000097003	D930007P13Rik	-	Riken cDNA D930007P13 gene	ncRNA	0.060000	0.592040	
mm_92420.1	chr10	77008218	77008418	-	1	NA	NA	NA	-3677	NR_045882	100038479	Mm.387034	NR_045882	ENSMUSG00000074919	Gm10787	ENSMUSG00000074919	predicted gene 10787	ncRNA	0.025000	0.567164	
mm_54965.1	chr6	48723541	48723741	-	1	NA	NA	NA	5020	NM_146167	231932	Mm.30479	NM_146167	ENSMUSG00000043931	Gimap7	IAN7|Ian3	GTPase, IMAP family member 7	protein-coding	0.025000	0.527363	
mm_65023.1	chr7	18354899	18355099	-	1	NA	NA	NA	-6	NM_001163685	26438	Mm.89991	NM_011963	ENSMUSG00000003505	Psg18	Cea-3|Cea3|mmCGM6	pregnancy specific glycoprotein 18	protein-coding	0.010000	0.497512	
mm_40387.1	chr5	52741496	52741696	+	1	NA	NA	NA	22	NM_025951	67073	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	0.110000	0.756219	
mm_127951.1	chr15	10723450	10723650	-	1	NA	NA	NA	8650	NR_045065	75259	Mm.33928	NR_045063	ENSMUSG00000097058	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	0.010000	0.537313	
mm_146291.1	chr18	78827353	78827553	+	1	NA	NA	NA	-230503	NM_030683	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.005000	0.472637	
mm_68824.1	chr7	126181524	126181724	-	1	NA	NA	NA	18784	NM_028816	74204	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|mKIAA0370	exportin 6	protein-coding	0.000000	0.492537	
mm_120487.1	chr14	65979591	65979791	+	1	NA	NA	NA	11208	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.030000	0.567164	
mm_169465.1	chr1	46583435	46583635	+	1	NA	NA	NA	158017	NM_001310335	100101919	Mm.383402	NM_001310335	ENSMUSG00000101337	Dnah7c	Dnahc7c	dynein, axonemal, heavy chain 7C	protein-coding	0.055000	0.656716	
mm_42593.1	chr5	117389048	117389248	+	1	NA	NA	NA	-125	NM_028128	72151	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	0.105000	0.706468	
mm_20073.1	chr2	120539759	120539959	-	1	NA	NA	NA	23972	NM_011743	20402	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|H3a|Sh3bp3|Znf106|sirm	zinc finger protein 106	protein-coding	0.005000	0.537313	
mm_150258.1	chr19	34192638	34192838	+	1	NA	NA	NA	468	NM_029682	76630	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.065000	0.626866	
mm_47409.1	chr5	123132565	123132765	-	1	NA	NA	NA	-36	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.035000	0.542289	
mm_115573.1	chr13	11569337	11569537	-	1	NA	NA	NA	47385	NR_027813	664793	Mm.410565	NR_027813		Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo	0.000000	0.472637	
mm_24828.1	chr3	95653821	95654021	+	1	NA	NA	NA	-4800	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.025000	0.482587	
mm_121419.1	chr14	119875546	119875746	+	1	NA	NA	NA	126419	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA	0.005000	0.432836	
mm_35849.1	chr4	48473248	48473448	-	1	NA	NA	NA	74	NM_172304	269536	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0.155000	0.711443	
mm_103689.1	chr11	79503873	79504073	-	1	NA	NA	NA	109	NM_019409	18377	Mm.93335	NM_019409	ENSMUSG00000049612	Omg	-	oligodendrocyte myelin glycoprotein	protein-coding	0.030000	0.482587	
mm_159870.1	chr5	146185204	146185404	-	1	NA	NA	NA	0	NM_001008547	69282	Mm.373573	NM_001008547	ENSMUSG00000095040	1700001J03Rik	-	RIKEN cDNA 1700001J03 gene	protein-coding	0.010000	0.512438	
mm_71308.1	chr8	42247102	42247302	+	1	NA	NA	NA	419935	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	0.010000	0.507463	36(CCCCTTAAGAGC,-,0.00),37(CCCTTAAGAGCA,+,0.00)
mm_7842.1	chr1	132358150	132358350	-	1	NA	NA	NA	9698	NM_001311108	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.000000	0.492537	
mm_138964.1	chr17	44734059	44734259	+	1	NA	NA	NA	2017	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.050000	0.641791	
mm_144708.1	chr18	34887422	34887622	+	1	NA	NA	NA	26315	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.105000	0.731343	
mm_118120.1	chr13	104109498	104109698	-	1	NA	NA	NA	16	NM_029447	75805	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	0.115000	0.746269	
mm_148674.1	chr19	5638113	5638313	+	1	NA	NA	NA	723	NM_009045	19697	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.030000	0.517413	
mm_171625.1	chr4	16631940	16632140	+	1	NA	NA	NA	467930	NR_045765	100415915	Mm.387180	NR_045765	ENSMUSG00000085112	A530072M11Rik	-	RIKEN cDNA gene A530072M11	ncRNA	0.035000	0.507463	-31(CTTTAAATACCC,+,0.00)
mm_117884.1	chr13	99411827	99412027	-	1	NA	NA	NA	899	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.547264	52(GGCTTTTTAAGT,-,0.00)
mm_56446.1	chr6	97487830	97488030	-	1	NA	NA	NA	-110	NM_001346637	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.065000	0.721393	
mm_159581.1	chr4	118809785	118809985	-	1	NA	NA	NA	-23	NM_207703	435804	Mm.296491	NM_207703	ENSMUSG00000066061	Olfr1335	MOR259-12|MOR259-5|Olfr1334-ps1|Olfr1335-ps1	olfactory receptor 1335	protein-coding	0.000000	0.467662	
mm_91867.1	chr10	59469357	59469557	-	1	NA	NA	NA	-27678	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.015000	0.407960	
mm_129911.1	chr15	84123089	84123289	-	1	NA	NA	NA	-14	NM_029427	75772	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0.025000	0.616915	
mm_2747.1	chr1	128612725	128612925	+	1	NA	NA	NA	-20526	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.005000	0.517413	
mm_52176.1	chr6	99262826	99263026	+	1	NA	NA	NA	3589	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.000000	0.353234	73(CAGTATAAAAGA,-,0.00)
mm_25092.1	chr3	100922355	100922555	+	1	NA	NA	NA	-38	NM_001165952	229644	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	0.080000	0.671642	
mm_58152.1	chr6	142322952	142323152	-	1	NA	NA	NA	-71	NM_130861	108096	Mm.206599	NM_130861	ENSMUSG00000063975	Slco1a5	Oatp-3|Oatp3|Slc21a7	solute carrier organic anion transporter family, member 1a5	protein-coding	0.010000	0.407960	
mm_86550.1	chr10	10234891	10235091	+	1	NA	NA	NA	237323	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.045000	0.492537	
mm_156745.1	chrX	159973351	159973551	+	1	NA	NA	NA	-14982	NM_001163085	270672	Mm.386889	NM_001163085	ENSMUSG00000031303	Map3k15	BC031147|MEKK15	mitogen-activated protein kinase kinase kinase 15	protein-coding	0.010000	0.323383	
mm_152682.1	chr19	15984894	15985094	-	1	NA	NA	NA	-5	NM_198019	208518	Mm.105652	NM_198019	ENSMUSG00000041491	Cep78	5730599I05Rik|D030027P05	centrosomal protein 78	protein-coding	0.175000	0.776119	
mm_67792.1	chr7	97729282	97729482	-	1	NA	NA	NA	8865	NM_175105	66333	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.010000	0.577114	
mm_99738.1	chr11	106374743	106374943	+	1	NA	NA	NA	17	NM_029345	75573	Mm.159539	NM_029345	ENSMUSG00000009210	Prr29	2310007L24Rik	proline rich 29	protein-coding	0.025000	0.631841	
mm_151172.1	chr19	53310361	53310561	+	1	NA	NA	NA	-45	NM_001008542	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.070000	0.616915	
mm_104566.1	chr11	96916317	96916517	-	1	NA	NA	NA	97	NM_001308183	80280	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0.050000	0.611940	
mm_19046.1	chr2	77170483	77170683	-	1	NA	NA	NA	52	NM_001025576	545428	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI|ENSMUSG00000075261	coiled-coil domain containing 141	protein-coding	0.035000	0.532338	
mm_49506.1	chr6	29853668	29853868	+	1	NA	NA	NA	27	NM_001347084	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.030000	0.517413	
mm_167774.1	chr9	112164578	112164778	-	1	NA	NA	NA	21271	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.005000	0.398010	
mm_129610.1	chr15	79934311	79934511	-	1	NA	NA	NA	-1765	NM_144811	52609	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	0.040000	0.547264	
mm_19554.1	chr2	98666576	98666776	-	1	NA	NA	NA	1199019	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.035000	0.373134	
mm_23441.1	chr3	59431977	59432177	+	1	NA	NA	NA	-87821	NM_001162884	242050	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.015000	0.427861	
mm_60772.1	chr7	45557457	45557657	+	1	NA	NA	NA	2629	NM_025330	66065	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.010000	0.552239	
mm_11853.1	chr2	45696502	45696702	+	1	NA	NA	NA	-3	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.025000	0.487562	
mm_15265.1	chr2	155095907	155096107	+	1	NA	NA	NA	4072	NR_040634	100504268	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	0.010000	0.452736	
mm_154296.1	chr19	61224497	61224697	-	1	NA	NA	NA	3821	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.020000	0.487562	
mm_132716.1	chr16	43508038	43508238	+	1	NA	NA	NA	-87942	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.015000	0.412935	
mm_4275.1	chr1	171559202	171559402	+	1	NA	NA	NA	109	NM_018729	18106	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0.010000	0.537313	
mm_163896.1	chr14	27379589	27379789	+	1	NA	NA	NA	18300	NM_001289688	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.050000	0.597015	
mm_27345.1	chr3	50414772	50414972	-	1	NA	NA	NA	28741	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.358209	
mm_23668.1	chr3	68572287	68572487	+	1	NA	NA	NA	19	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.060000	0.636816	
mm_132246.1	chr16	32751131	32751331	+	1	NA	NA	NA	15345	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.005000	0.467662	
mm_63713.1	chr7	130692668	130692868	+	1	NA	NA	NA	212	NM_021314	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.115000	0.756219	
mm_153194.1	chr19	34524355	34524555	-	1	NA	NA	NA	3019	NM_001111100	16889	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.010000	0.338308	-32(TCATTTAAAGCA,+,0.00)
mm_22738.1	chr3	19894809	19895009	+	1	NA	NA	NA	38	NR_027985	70808	Mm.427103	NR_027985	ENSMUSG00000048106	4632415L05Rik	AI662792	RRS1 ribosome biogenesis regulator homolog pseudogene	pseudo	0.045000	0.552239	
mm_15829.1	chr2	164653745	164653945	+	1	NA	NA	NA	1121	NM_001160414	629754	Mm.190489	NM_001160414	ENSMUSG00000074594	Wfdc9	OTTMUSG00000001088	WAP four-disulfide core domain 9	protein-coding	0.010000	0.512438	
mm_137823.1	chr17	30576445	30576645	+	1	NA	NA	NA	-258	NM_027060	224671	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0.090000	0.616915	
mm_11509.1	chr2	32570787	32570987	+	1	NA	NA	NA	29	NM_010073	13481	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0.065000	0.577114	
mm_45174.1	chr5	51534428	51534628	-	1	NA	NA	NA	19393	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.000000	0.427861	
mm_145197.1	chr18	49937392	49937592	+	1	NA	NA	NA	-41935	NM_001177760	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.005000	0.417910	
mm_133864.1	chr16	96361617	96361817	+	1	NA	NA	NA	-40	NM_001177887	72058	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.020000	0.547264	
mm_32661.1	chr4	115090108	115090308	+	1	NA	NA	NA	1500	NM_001164557	67182	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	0.005000	0.502488	
mm_90690.1	chr10	128970982	128971182	+	1	NA	NA	NA	-10094	NM_027853	71664	Mm.337232	NM_027853	ENSMUSG00000025347	Mettl7b	0610006F02Rik|AI266817	methyltransferase like 7B	protein-coding	0.005000	0.407960	
mm_27247.1	chr3	36613324	36613524	-	1	NA	NA	NA	-35	NM_027810	71492	Mm.286187	NM_027810	ENSMUSG00000037325	Bbs7	8430406N16Rik	Bardet-Biedl syndrome 7 (human)	protein-coding	0.090000	0.681592	
mm_44227.1	chr5	5076159	5076359	-	1	NA	NA	NA	189809	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.020000	0.398010	
mm_60664.1	chr7	44997655	44997855	+	1	NA	NA	NA	107	NM_016849	54131	Mm.3960	NM_016849	ENSMUSG00000003184	Irf3	C920001K05Rik|IRF-3	interferon regulatory factor 3	protein-coding	0.045000	0.467662	
mm_100273.1	chr11	117762349	117762549	+	1	NA	NA	NA	18172	NM_181321	217353	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.060000	0.611940	
mm_76628.1	chr8	91801786	91801986	-	1	NA	NA	NA	-232	NM_008393	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.050000	0.547264	
mm_99022.1	chr11	98927740	98927940	+	1	NA	NA	NA	-9856	NM_009024	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.035000	0.616915	
mm_124997.1	chr15	23036371	23036571	+	1	NA	NA	NA	8	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding	0.045000	0.631841	
mm_30214.1	chr3	145009730	145009930	-	1	NA	NA	NA	22946	NM_017474	23844	Mm.33483	NM_017474	ENSMUSG00000028255	Clca1	Clca2|Clca3|gob-5|gob5	chloride channel accessory 1	protein-coding	0.020000	0.457711	
mm_68581.1	chr7	115953213	115953413	-	1	NA	NA	NA	41773	NM_011445	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.010000	0.442786	
mm_139487.1	chr17	56079588	56079788	+	1	NA	NA	NA	57	NM_001304785	15193	Mm.12966	NM_008233	ENSMUSG00000002833	Hdgfrp2	HRP-2	hepatoma-derived growth factor, related protein 2	protein-coding	0.120000	0.711443	
mm_75551.1	chr8	57652903	57653103	-	1	NA	NA	NA	52	NM_001167981	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0.065000	0.696517	
mm_138625.1	chr17	35841576	35841776	+	1	NA	NA	NA	178	NM_001010833	240087	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	0.095000	0.646766	
mm_159697.1	chr5	26039407	26039607	-	1	NA	NA	NA	-2	NM_029376	75657	Mm.374273	NM_029376	ENSMUSG00000073119	Speer4a	1700027N01Rik|SPEER-4A	spermatogenesis associated glutamate (E)-rich protein 4A	protein-coding	0.010000	0.487562	
mm_148626.1	chr19	5447763	5447963	+	1	NA	NA	NA	165	NM_010235	14283	Mm.6215	NM_010235	ENSMUSG00000024912	Fosl1	AW538199|Fra1|fra-1	fos-like antigen 1	protein-coding	0.070000	0.601990	
mm_148849.1	chr19	6384355	6384555	+	1	NA	NA	NA	47	NM_011224	19309	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0.025000	0.582090	
mm_57358.1	chr6	124760733	124760933	-	1	NA	NA	NA	-4346	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.000000	0.343284	
mm_5829.1	chr1	52800333	52800533	-	1	NA	NA	NA	17255	NM_008384	16329	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	0.015000	0.487562	
mm_2392.1	chr1	93512042	93512242	+	1	NA	NA	NA	38	NM_145519	227377	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	0.165000	0.810945	
mm_45298.1	chr5	65330044	65330244	-	1	NA	NA	NA	5495	NM_011258	19687	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0.010000	0.467662	
mm_172276.1	chr6	85843781	85843981	+	1	NA	NA	NA	-11991	NM_023455	68396	Mm.154782	NM_023455	ENSMUSG00000030004	Nat8	0610037O16Rik|CCNAT|Cml4	N-acetyltransferase 8 (GCN5-related)	protein-coding	0.080000	0.626866	-39(GAATATAAAAGA,-,0.00)
mm_113474.1	chr13	36729949	36730149	+	1	NA	NA	NA	4428	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.035000	0.587065	
mm_168058.1	chrY	90828630	90828830	-	1	NA	NA	NA	10676	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.060000	0.636816	
mm_90825.1	chr10	7950064	7950264	-	1	NA	NA	NA	5959	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.015000	0.442786	
mm_155403.1	chrX	73228193	73228393	+	1	NA	NA	NA	-13	NM_007978	14070	Mm.165807	NM_007978	ENSMUSG00000078317	F8a	AI852759|DXUcsf1|F8a1	factor 8-associated gene A	protein-coding	0.075000	0.636816	
mm_80515.1	chr9	80066659	80066859	+	1	NA	NA	NA	-144	NM_001311110	215351	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.085000	0.711443	
mm_30994.1	chr4	39450191	39450391	+	1	NA	NA	NA	-2	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0.005000	0.517413	-96(CCATTTATGGCC,+,0.00)
mm_155700.1	chrX	94636006	94636206	+	1	NA	NA	NA	37	NM_008179	14853	Mm.20826	NM_008179	ENSMUSG00000071723	Gspt2	-	G1 to S phase transition 2	protein-coding	0.085000	0.626866	
mm_65755.1	chr7	28629604	28629804	-	1	NA	NA	NA	1311	NM_175319	101744	Mm.26022	NM_175319	ENSMUSG00000037469	Acp7	AU017076|C330005M16Rik|Papl	acid phosphatase 7, tartrate resistant	protein-coding	0.030000	0.532338	
mm_172624.1	chr8	20270720	20270920	-	1	NA	NA	NA	26612	NR_030708	547150	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0.005000	0.407960	
mm_7964.1	chr1	133930039	133930239	-	1	NA	NA	NA	-8738	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.015000	0.507463	
mm_156730.1	chrX	159924827	159925027	+	1	NA	NA	NA	-17766	NM_001290661	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.010000	0.497512	
mm_116434.1	chr13	42174536	42174736	-	1	NA	NA	NA	122615	NM_007772	110521	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.000000	0.447761	
mm_1510.1	chr1	72383259	72383459	+	1	NA	NA	NA	75938	NM_009533	22596	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.015000	0.427861	
mm_118264.1	chr13	112552010	112552210	-	1	NA	NA	NA	28552	NM_139299	218624	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	0.010000	0.442786	-34(CTGCATTAAAGG,-,0.00),-32(GCATTAAAGGAC,+,0.00)
mm_122859.1	chr14	54893779	54893979	-	1	NA	NA	NA	-264	NM_019402	54196	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	0.050000	0.562189	
mm_65420.1	chr7	25267315	25267515	-	1	NA	NA	NA	-284	NM_001302811	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.065000	0.582090	
mm_51185.1	chr6	70849363	70849563	+	1	NA	NA	NA	4948	NM_001313918	13666	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.000000	0.407960	-6(TTTTTTAAAGAC,+,0.00)
mm_98890.1	chr11	97838039	97838239	+	1	NA	NA	NA	-2641	NM_001080935	68127	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0.005000	0.532338	-40(CCCTAGAAATGG,-,0.00)
mm_151288.1	chr19	55315531	55315731	+	1	NA	NA	NA	401	NM_025883	66980	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369	zinc finger, DHHC domain containing 6	protein-coding	0.065000	0.547264	
mm_42786.1	chr5	121463101	121463301	+	1	NA	NA	NA	20	NM_001161627	77462	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	0.005000	0.597015	16(GTCTTTATGGCC,+,0.00)
mm_113243.1	chr13	27345598	27345798	+	1	NA	NA	NA	25	NM_001289919	13529	Mm.291450	NM_010088	ENSMUSG00000018259	Prl8a2	D/tPRP|DPRP|Dtprp|Ghd11|mdPRP	prolactin family 8, subfamily a, member 2	protein-coding	0.005000	0.457711	-58(AACTATATAGGG,-,0.00)
mm_156081.1	chrX	109199473	109199673	+	1	NA	NA	NA	2817	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.000000	0.278607	-52(CCTTTTAAAATG,+,0.00)
mm_61580.1	chr7	79842436	79842636	+	1	NA	NA	NA	-184	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.010000	0.606965	
mm_158459.1	chrX	140599383	140599583	-	1	NA	NA	NA	1039	NM_001077364	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.135000	0.761194	
mm_90414.1	chr10	127421122	127421322	+	1	NA	NA	NA	355	NM_001168293	71750	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.015000	0.502488	
mm_148259.1	chr18	80860859	80861059	-	1	NA	NA	NA	73099	NM_001201569	50771	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	0.010000	0.472637	
mm_155734.1	chrX	96165968	96166168	+	1	NA	NA	NA	70023	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.025000	0.557214	
mm_80206.1	chr9	72438489	72438689	+	1	NA	NA	NA	60	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.070000	0.606965	
mm_35455.1	chr4	40702815	40703015	-	1	NA	NA	NA	1	NM_025545	66408	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0.040000	0.587065	
mm_6260.1	chr1	69108339	69108539	-	1	NA	NA	NA	-380	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	0.030000	0.462687	
mm_26041.1	chr3	135548515	135548715	+	1	NA	NA	NA	63004	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.010000	0.517413	
mm_81463.1	chr9	109861537	109861737	+	1	NA	NA	NA	-12181	NM_009921	12796	Mm.3834	NM_009921	ENSMUSG00000038357	Camp	CAP18|Cnlp|Cramp|FALL39|MCLP	cathelicidin antimicrobial peptide	protein-coding	0.020000	0.597015	
mm_76520.1	chr8	87472027	87472227	-	1	NA	NA	NA	465	NM_019626	12404	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0.045000	0.646766	
mm_64567.1	chr7	144896927	144897127	+	1	NA	NA	NA	495	NM_008003	14170	Mm.3904	NM_008003	ENSMUSG00000031073	Fgf15	FGF19	fibroblast growth factor 15	protein-coding	0.055000	0.592040	
mm_98356.1	chr11	93885180	93885380	+	1	NA	NA	NA	486	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.125000	0.781095	
mm_107626.1	chr12	51691033	51691233	+	1	NA	NA	NA	167	NM_001329698	11782	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0.060000	0.671642	
mm_16596.1	chr2	4956257	4956457	-	1	NA	NA	NA	-19765	NM_001311208	68527	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding	0.005000	0.482587	-31(TTTTTTAAAGTG,+,0.00)
mm_26026.1	chr3	135438994	135439194	+	1	NA	NA	NA	335	NM_025356	66105	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.175000	0.815920	
mm_102520.1	chr11	60878688	60878888	-	1	NA	NA	NA	250	NM_173453	216821	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	0.145000	0.721393	
mm_148449.1	chr19	3972437	3972637	+	1	NA	NA	NA	209	NM_001177438	621603	Mm.34137	NM_001177438	ENSMUSG00000075296	Aldh3b2	AI848594|C130048D07Rik	aldehyde dehydrogenase 3 family, member B2	protein-coding	0.015000	0.597015	
mm_109561.1	chr12	111814174	111814374	+	1	NA	NA	NA	104	NM_026752	68520	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	0.125000	0.721393	
mm_123726.1	chr14	70159323	70159523	-	1	NA	NA	NA	79	NM_001112735	268759	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	0.105000	0.701493	
mm_48402.1	chr5	140208638	140208838	-	1	NA	NA	NA	112814	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.005000	0.517413	
mm_143064.1	chr17	57011547	57011747	-	1	NA	NA	NA	-359	NM_133801	98053	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0.060000	0.592040	
mm_66470.1	chr7	44974661	44974861	-	1	NA	NA	NA	90	NM_153679	78070	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik	carnitine palmitoyltransferase 1c	protein-coding	0.045000	0.562189	
mm_51301.1	chr6	72309739	72309939	+	1	NA	NA	NA	5229	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.025000	0.641791	
mm_117074.1	chr13	59491692	59491892	-	1	NA	NA	NA	52659	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.005000	0.343284	
mm_5040.1	chr1	193632610	193632810	+	1	NA	NA	NA	-125180	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.070000	0.636816	
mm_160963.1	chr11	99591138	99591338	-	1	NA	NA	NA	139	NM_001085526	435273		NM_001085526	ENSMUSG00000078131	Krtap1-3	-	keratin associated protein 1-3	protein-coding	0.005000	0.636816	
mm_113132.1	chr13	24614521	24614721	+	1	NA	NA	NA	15	NM_178658	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.020000	0.567164	
mm_154446.1	chrM	1504	1704	-	1	NA	NA	NA	NA	NA									0.010000	0.323383	-12(GCTTTTAGGCCT,+,0.00),31(CACTATTAAAGG,-,0.00)
mm_142890.1	chr17	51832989	51833189	-	1	NA	NA	NA	201	NM_001163632	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.140000	0.796020	
mm_68128.1	chr7	102209984	102210184	-	1	NA	NA	NA	82	NM_001287166	269966	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	0.155000	0.731343	
mm_45066.1	chr5	43781955	43782155	-	1	NA	NA	NA	94	NM_001159963	242960	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0.125000	0.726368	
mm_7559.1	chr1	124722912	124723112	-	1	NA	NA	NA	-677453	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.452736	
mm_106109.1	chr11	116307079	116307279	-	1	NA	NA	NA	-429	NM_001347636	53413	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	0.025000	0.497512	-92(CCCTATATACCA,+,0.00)
mm_14561.1	chr2	134855194	134855394	+	1	NA	NA	NA	69130	NM_001145830	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding	0.000000	0.393035	
mm_254.1	chr1	19605995	19606195	+	1	NA	NA	NA	394041	NM_001025305	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.005000	0.457711	
mm_86932.1	chr10	24188936	24189136	+	1	NA	NA	NA	-34481	NM_021509	59012	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	0.000000	0.402985	
mm_23931.1	chr3	83773754	83773954	+	1	NA	NA	NA	7533	NM_009144	20319	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0.020000	0.447761	
mm_155363.1	chrX	71050066	71050266	+	1	NA	NA	NA	-90	NM_001256048	333639	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	0.125000	0.701493	
mm_30037.1	chr3	135691350	135691550	-	1	NA	NA	NA	97	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.125000	0.696517	
mm_93162.1	chr10	93258328	93258528	-	1	NA	NA	NA	52731	NM_001322268	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.015000	0.388060	
mm_94129.1	chr10	128676636	128676836	-	1	NA	NA	NA	-2818	NM_173733	211389	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	0.045000	0.457711	
mm_139651.1	chr17	57398502	57398702	+	1	NA	NA	NA	39916	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.243781	76(GTATTTAAAAGC,-,0.00)
mm_43948.1	chr5	145135036	145135236	+	1	NA	NA	NA	4953	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.000000	0.427861	
mm_162873.1	chr10	95808817	95809017	-	1	NA	NA	NA	-131746	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.010000	0.457711	
mm_165738.1	chr3	107211367	107211567	-	1	NA	NA	NA	10265	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.522388	
mm_91481.1	chr10	34418416	34418616	-	1	NA	NA	NA	35	NM_176968	319638	Mm.73467	NM_176968	ENSMUSG00000039480	Nt5dc1	6030401B09Rik|AW987726|Nt5c2l1	5'-nucleotidase domain containing 1	protein-coding	0.110000	0.681592	
mm_34206.1	chr4	140945306	140945506	+	1	NA	NA	NA	12496	NR_045911	100126227	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	OTTMUSG00000010081	predicted gene 13031	ncRNA	0.015000	0.492537	
mm_104614.1	chr11	97280270	97280470	-	1	NA	NA	NA	206	NM_008942	19155	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0.130000	0.756219	
mm_100550.1	chr11	120721394	120721594	+	1	NA	NA	NA	26	NM_133223	170758	Mm.34008	NM_133223	ENSMUSG00000018012	Rac3	Rac1B	RAS-related C3 botulinum substrate 3	protein-coding	0.175000	0.796020	
mm_80657.1	chr9	90054416	90054616	+	1	NA	NA	NA	249	NM_001312649	13036	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.055000	0.681592	
mm_55952.1	chr6	85370004	85370204	-	1	NA	NA	NA	4530	NM_177466	52055	Mm.220334	NM_177466	ENSMUSG00000051343	Rab11fip5	9130206P09Rik|C75969|D6Ertd32e|GAF1|RIP11	RAB11 family interacting protein 5 (class I)	protein-coding	0.015000	0.462687	-2(GTTTTTAGAGAA,+,0.00)
mm_170478.1	chr19	12153022	12153222	-	1	NA	NA	NA	-32448	NM_146682	258677	Mm.261576	NM_146682	ENSMUSG00000067522	Olfr76	MOR215-3|V5	olfactory receptor 76	protein-coding	0.045000	0.567164	
mm_78509.1	chr9	32754663	32754863	+	1	NA	NA	NA	58721	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.005000	0.368159	
mm_87937.1	chr10	62761580	62761780	+	1	NA	NA	NA	3926	NR_028557	100217463		NR_028557		Snord98	MBII-419	small nucleolar RNA, C/D box 98	snoRNA	0.010000	0.368159	
mm_45215.1	chr5	52994336	52994536	-	1	NA	NA	NA	-2144	NR_040413	75954	Mm.258937	NR_040413	ENSMUSG00000106352	5033403H07Rik	-	RIKEN cDNA 5033403H07 gene	ncRNA	0.010000	0.467662	
mm_33996.1	chr4	137905177	137905377	+	1	NA	NA	NA	43040	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.030000	0.542289	
mm_87729.1	chr10	60126039	60126239	+	1	NA	NA	NA	-637	NR_105871	102465546		NR_105871	ENSMUSG00000105468	Mir6906	mmu-mir-6906	microRNA 6906	ncRNA	0.035000	0.616915	
mm_90219.1	chr10	121033945	121034145	+	1	NA	NA	NA	41	NM_011915	24117	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0.080000	0.661692	
mm_47865.1	chr5	134631686	134631886	-	1	NA	NA	NA	7623	NM_001312867	22384	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0.000000	0.373134	
mm_162646.1	chr1	194892136	194892336	+	1	NA	NA	NA	-46585	NM_133654	12490	Mm.29798	NM_133654	ENSMUSG00000016494	Cd34	AU040960	CD34 antigen	protein-coding	0.000000	0.308458	
mm_142712.1	chr17	47914109	47914309	-	1	NA	NA	NA	10423	NM_028767	74123	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.005000	0.398010	
mm_65714.1	chr7	28378182	28378382	-	1	NA	NA	NA	946	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.050000	0.631841	
mm_126142.1	chr15	78348853	78349053	+	1	NA	NA	NA	354	NR_106138	102466845		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0.005000	0.611940	
mm_56503.1	chr6	99338240	99338440	-	1	NA	NA	NA	-71825	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.005000	0.522388	20(TGCTTTATAAGG,-,0.00)
mm_90211.1	chr10	120775881	120776081	+	1	NA	NA	NA	10249	NR_038003	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.010000	0.422886	
mm_105990.1	chr11	115628008	115628208	-	1	NA	NA	NA	187	NM_001252394	67283	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.045000	0.597015	
mm_13409.1	chr2	104069729	104069929	+	1	NA	NA	NA	-1181	NM_181858	333883	Mm.359026	NM_181858	ENSMUSG00000068686	Cd59b	-	CD59b antigen	protein-coding	0.010000	0.547264	
mm_164229.1	chr15	88891134	88891334	+	1	NA	NA	NA	29040	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.045000	0.621891	
mm_21904.1	chr2	166398034	166398234	-	1	NA	NA	NA	-49317	NR_015558	319684	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.025000	0.606965	
mm_40785.1	chr5	67395609	67395809	+	1	NA	NA	NA	32090	NM_001164806	666938	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.000000	0.462687	-35(AGCCTTAAATGG,-,0.00),-33(CCTTAAATGGAT,+,0.00)
mm_79795.1	chr9	64084828	64085028	+	1	NA	NA	NA	4167	NR_040743	76814	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.125000	0.756219	
mm_123022.1	chr14	55116473	55116673	-	1	NA	NA	NA	362	NM_177049	319984	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.025000	0.616915	
mm_152977.1	chr19	29486470	29486670	-	1	NA	NA	NA	35417	NR_015567	77779	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.020000	0.472637	
mm_8111.1	chr1	135919070	135919270	-	1	NA	NA	NA	37	NM_001313701	18772	Mm.4494	NM_019645	ENSMUSG00000026413	Pkp1	-	plakophilin 1	protein-coding	0.095000	0.711443	
mm_137601.1	chr17	28207757	28207957	+	1	NA	NA	NA	79	NM_027185	23853	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0.055000	0.621891	
mm_141347.1	chr17	28560611	28560811	-	1	NA	NA	NA	55	NM_025469	109791	Mm.21160	NM_025469	ENSMUSG00000024225	Clps	2200003J09Rik	colipase, pancreatic	protein-coding	0.010000	0.527363	-33(TTCTTTAAAGGC,+,0.00),-33(TTCTTTAAAGGC,-,0.00)
mm_29101.1	chr3	104818017	104818217	-	1	NA	NA	NA	188	NM_008619	17454	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0.090000	0.656716	
mm_62235.1	chr7	98656052	98656252	+	1	NA	NA	NA	417	NM_172280	233545	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0.115000	0.691542	
mm_167754.1	chr9	110421638	110421838	-	1	NA	NA	NA	1930	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.020000	0.557214	
mm_26173.1	chr3	138288656	138288856	+	1	NA	NA	NA	11111	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.015000	0.477612	
mm_158866.1	chrY	1137080	1137280	-	1	NA	NA	NA	-78312	NR_027507	22109	Mm.10106	NR_027507	ENSMUSG00000091749	Tspy-ps	-	testis specific protein-Y encoded, pseudogene	pseudo	0.000000	0.248756	
mm_83390.1	chr9	44604697	44604897	-	1	NA	NA	NA	-95	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.200000	0.840796	
mm_94135.1	chr10	128698004	128698204	-	1	NA	NA	NA	-1836	NM_177411	19344	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	0.000000	0.293532	
mm_52495.1	chr6	114748762	114748962	+	1	NA	NA	NA	105765	NM_001253717	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.000000	0.248756	
mm_59982.1	chr7	30465649	30465849	+	1	NA	NA	NA	-158	NR_004443	445267	Mm.398140	NR_004443	ENSMUSG00000087009	Nphs1os	Nphs1as	nephrosis 1 homolog, nephrin, opposite strand	ncRNA	0.055000	0.601990	
mm_116859.1	chr13	54765612	54765812	-	1	NA	NA	NA	728	NM_033610	104069	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	0.050000	0.671642	
mm_144050.1	chr17	90455885	90456085	-	1	NA	NA	NA	-105	NM_001346959	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.035000	0.472637	
mm_51248.1	chr6	71729760	71729960	+	1	NA	NA	NA	22179	NM_178608	52250	Mm.146332	NM_178608	ENSMUSG00000052852	Reep1	D6Ertd253e	receptor accessory protein 1	protein-coding	0.015000	0.378109	
mm_7620.1	chr1	126830692	126830892	-	1	NA	NA	NA	-160	NM_176957	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.060000	0.512438	
mm_33559.1	chr4	131873544	131873744	+	1	NA	NA	NA	5	NM_020587	57317	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0.180000	0.800995	
mm_129014.1	chr15	74923469	74923669	-	1	NA	NA	NA	-31482	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.020000	0.542289	
mm_663.1	chr1	40441224	40441424	+	1	NA	NA	NA	1695	NM_010743	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.020000	0.398010	
mm_141748.1	chr17	34214379	34214579	-	1	NA	NA	NA	10000	NM_011530	21355	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.030000	0.671642	
mm_20116.1	chr2	121160213	121160413	-	1	NA	NA	NA	10812	NM_001290819	99334	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	0.020000	0.422886	
mm_77017.1	chr8	108537753	108537953	-	1	NA	NA	NA	46824	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.055000	0.597015	
mm_6831.1	chr1	84208694	84208894	-	1	NA	NA	NA	10167	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.273632	
mm_113578.1	chr13	40859715	40859915	+	1	NA	NA	NA	47	NM_023887	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.030000	0.462687	
mm_149641.1	chr19	17400091	17400291	+	1	NA	NA	NA	6148	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.020000	0.532338	
mm_165505.1	chr2	167776660	167776860	+	1	NA	NA	NA	85583	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.030000	0.572139	
mm_9587.1	chr1	174031712	174031912	-	1	NA	NA	NA	-57	NM_172648	226695	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	0.005000	0.482587	64(TCATTTATACCC,+,0.00)
mm_60018.1	chr7	30766475	30766675	+	1	NA	NA	NA	2819	NM_001166174	73712	Mm.30138	NM_028618	ENSMUSG00000060962	Dmkn	1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36	dermokine	protein-coding	0.010000	0.383085	
mm_40818.1	chr5	72261325	72261525	+	1	NA	NA	NA	58082	NM_153389	231287	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.010000	0.407960	
mm_10905.1	chr2	25332704	25332904	+	1	NA	NA	NA	61	NM_001029983	227619	Mm.270798	NM_001029983	ENSMUSG00000036646	Man1b1	E430019H13Rik|ERMan1|Gm108|MANA-ER	mannosidase, alpha, class 1B, member 1	protein-coding	0.125000	0.656716	
mm_51030.1	chr6	65525214	65525414	+	1	NA	NA	NA	-65084	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.015000	0.442786	
mm_141551.1	chr17	32166789	32166989	-	1	NA	NA	NA	-37	NM_008716	18131	Mm.439741	NM_008716	ENSMUSG00000038146	Notch3	AW229011|N3|hpbk	notch 3	protein-coding	0.110000	0.800995	
mm_43034.1	chr5	123973625	123973825	+	1	NA	NA	NA	97	NM_145070	29816	Mm.149954	NM_145070	ENSMUSG00000000915	Hip1r	AA410023|mKIAA0655	huntingtin interacting protein 1 related	protein-coding	0.135000	0.736318	
mm_132602.1	chr16	38558614	38558814	+	1	NA	NA	NA	16	NM_001205286	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.000000	0.412935	
mm_151239.1	chr19	53821592	53821792	+	1	NA	NA	NA	-70539	NM_011050	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.015000	0.502488	
mm_152949.1	chr19	29021215	29021415	-	1	NA	NA	NA	-26168	NR_028360	67329	Mm.394933	NR_028360		1700018L02Rik	-	RIKEN cDNA 1700018L02 gene	ncRNA	0.000000	0.378109	
mm_164782.1	chr18	5721281	5721481	+	1	NA	NA	NA	-128944	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	0.005000	0.383085	
mm_170550.1	chr19	4078404	4078604	-	1	NA	NA	NA	-3984	NM_001160253	29866	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0.025000	0.452736	
mm_170709.1	chr2	14295598	14295798	+	1	NA	NA	NA	34695	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.015000	0.452736	
mm_52805.1	chr6	121342422	121342622	+	1	NA	NA	NA	-554	NM_001347433	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.010000	0.567164	
mm_108389.1	chr12	80946199	80946399	+	1	NA	NA	NA	800	NM_001347415	20384	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0.080000	0.676617	
mm_109613.1	chr12	112760340	112760540	+	1	NA	NA	NA	-215	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.000000	0.407960	
mm_111852.1	chr12	107939036	107939236	-	1	NA	NA	NA	64278	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.015000	0.407960	
mm_101687.1	chr11	40694867	40695067	-	1	NA	NA	NA	236	NM_001199274	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.060000	0.547264	-7(TAATTTAAAAGG,-,0.00)
mm_31557.1	chr4	57434263	57434463	+	1	NA	NA	NA	-70071	NR_038178	73349	Mm.393774	NR_038178		1700042G15Rik	-	RIKEN cDNA 1700042G15 gene	ncRNA	0.075000	0.616915	-60(CCCCTTAAGAGG,-,0.00),-59(CCCTTAAGAGGC,+,0.00)
mm_39311.1	chr5	8046073	8046273	+	1	NA	NA	NA	95	NM_025618	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.010000	0.442786	
mm_140605.1	chr17	10319674	10319874	-	1	NA	NA	NA	-145	NR_037588	100526796	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	0.105000	0.606965	
mm_100643.1	chr11	121830167	121830367	+	1	NA	NA	NA	49	NM_029049	74675	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.060000	0.651741	
mm_147979.1	chr18	67502499	67502699	-	1	NA	NA	NA	37750	NM_144867	225655	Mm.221420	NM_144867	ENSMUSG00000024530	Slmo1	A230074A19Rik|BC019561|Prelid3a	slowmo homolog 1 (Drosophila)	protein-coding	0.015000	0.402985	
mm_106549.1	chr11	120581443	120581643	-	1	NA	NA	NA	77	NM_133796	192662	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.170000	0.736318	
mm_82219.1	chr9	3018899	3019099	-	1	NA	NA	NA	19744	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.010000	0.353234	
mm_43122.1	chr5	124862623	124862823	+	1	NA	NA	NA	18	NM_001081750	269704	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	0.135000	0.756219	
mm_8021.1	chr1	135105065	135105265	-	1	NA	NA	NA	111	NM_001033409	329252	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0.155000	0.781095	
mm_47480.1	chr5	123749283	123749483	-	1	NA	NA	NA	31	NM_001005525	208606	Mm.276341	NM_025438	ENSMUSG00000029422	Rsrc2	1500011J06Rik	arginine/serine-rich coiled-coil 2	protein-coding	0.075000	0.557214	
mm_54595.1	chr6	38254141	38254341	-	1	NA	NA	NA	-232	NM_194061	330286	Mm.277163	NM_194061	ENSMUSG00000063455	D630045J12Rik	Kiaa1549|mKIAA1549	RIKEN cDNA D630045J12 gene	protein-coding	0.165000	0.850746	
mm_137406.1	chr17	26069537	26069737	+	1	NA	NA	NA	-460	NM_001162869	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.110000	0.597015	
mm_104006.1	chr11	85038250	85038450	-	1	NA	NA	NA	80596	NM_007607	12351	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	0.000000	0.308458	
mm_42544.1	chr5	116006679	116006879	+	1	NA	NA	NA	17649	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.030000	0.383085	
mm_170041.1	chr17	24414592	24414792	+	1	NA	NA	NA	17	NM_001080128	19826	Mm.1951	NM_009070	ENSMUSG00000034681	Rnps1	-	ribonucleic acid binding protein S1	protein-coding	0.100000	0.626866	
mm_153431.1	chr19	40953244	40953444	-	1	NA	NA	NA	41191	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.005000	0.373134	
mm_124802.1	chr15	8446091	8446291	+	1	NA	NA	NA	-1728	NM_201232	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.050000	0.592040	
mm_46155.1	chr5	96093253	96093453	-	1	NA	NA	NA	68194	NM_001285511	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.000000	0.203980	
mm_6117.1	chr1	64121277	64121477	-	1	NA	NA	NA	12	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.045000	0.497512	
mm_69757.1	chr7	140999355	140999555	-	1	NA	NA	NA	11289	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.025000	0.437811	
mm_106162.1	chr11	116653866	116654066	-	1	NA	NA	NA	347	NM_030206	114886	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0.130000	0.726368	
mm_166365.1	chr5	124450755	124450955	+	1	NA	NA	NA	4151	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.015000	0.512438	
mm_80349.1	chr9	75177582	75177782	+	1	NA	NA	NA	-54332	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.000000	0.467662	1(GAGCCTATAAGC,-,0.00)
mm_34965.1	chr4	156008562	156008762	+	1	NA	NA	NA	-5033	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.015000	0.492537	
mm_142594.1	chr17	46752101	46752301	-	1	NA	NA	NA	13	NM_001305989	72029	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	0.130000	0.726368	
mm_29563.1	chr3	116808143	116808343	-	1	NA	NA	NA	-77	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.105000	0.751244	
mm_151175.1	chr19	53310475	53310675	+	1	NA	NA	NA	69	NM_001008542	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.080000	0.661692	
mm_155233.1	chrX	57200464	57200664	+	1	NA	NA	NA	-73	NR_038463	100502842	Mm.164733	NR_038463	ENSMUSG00000085808	Gm14718	OTTMUSG00000017790	predicted gene 14718	ncRNA	0.000000	0.472637	
mm_14308.1	chr2	129129714	129129914	+	1	NA	NA	NA	114	NM_025395	66170	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	0.060000	0.562189	
mm_40538.1	chr5	57965093	57965293	+	1	NA	NA	NA	247112	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.000000	0.388060	
mm_45307.1	chr5	65424234	65424434	-	1	NA	NA	NA	11508	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.025000	0.502488	
mm_19328.1	chr2	90574517	90574717	-	1	NA	NA	NA	6030	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.020000	0.592040	-82(CCCTTTAGAGAG,+,0.00)
mm_28540.1	chr3	92807798	92807998	-	1	NA	NA	NA	-7	NM_001254760	631101	Mm.250525	NM_001254760	ENSMUSG00000095870	Lce1k	Gm7055|Sprrl6	late cornified envelope 1K	protein-coding	0.000000	0.487562	
mm_111142.1	chr12	81781049	81781249	-	1	NA	NA	NA	21	NM_177395	338372	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.160000	0.845771	
mm_119536.1	chr14	47719696	47719896	+	1	NA	NA	NA	56040	NM_001347522	16709	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	0.025000	0.517413	
mm_45767.1	chr5	86917187	86917387	-	1	NA	NA	NA	9216	NM_152811	71773	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0.000000	0.293532	
mm_72901.1	chr8	90876518	90876718	+	1	NA	NA	NA	47783	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.025000	0.582090	
mm_150665.1	chr19	42022108	42022308	+	1	NA	NA	NA	-13830	NM_020033	56642	Mm.143737	NM_020033	ENSMUSG00000025172	Ankrd2	Arpp|mArpp	ankyrin repeat domain 2 (stretch responsive muscle)	protein-coding	0.015000	0.597015	
mm_18881.1	chr2	76647881	76648081	-	1	NA	NA	NA	13	NM_011871	23992	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0.075000	0.676617	
mm_157847.1	chrX	74393090	74393290	-	1	NA	NA	NA	84	NM_025473	66294	Mm.166485	NM_025473	ENSMUSG00000031399	Fam3a	1810037C20Rik	family with sequence similarity 3, member A	protein-coding	0.060000	0.626866	
mm_39627.1	chr5	24428127	24428327	+	1	NA	NA	NA	706	NM_001253892	20535	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0.050000	0.611940	
mm_38152.1	chr4	134918291	134918491	-	1	NA	NA	NA	-3475	NM_027935	71817	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0.020000	0.467662	
mm_49525.1	chr6	29985250	29985450	+	1	NA	NA	NA	21	NR_040263	76419	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	0.105000	0.676617	
mm_83220.1	chr9	42124266	42124466	-	1	NA	NA	NA	-77	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.145000	0.751244	
mm_168996.1	chr13	100272057	100272257	+	1	NA	NA	NA	-24821	NM_010870	17951	Mm.290476	NM_010870	ENSMUSG00000071203	Naip5	Birc1e|Lgn1|Naip-rs3	NLR family, apoptosis inhibitory protein 5	protein-coding	0.020000	0.492537	
mm_171543.1	chr4	147021695	147021895	+	1	NA	NA	NA	-55	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.025000	0.502488	
mm_29731.1	chr3	126746383	126746583	-	1	NA	NA	NA	149532	NM_023813	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.015000	0.477612	-45(TGCCTTTAAAAG,-,0.00),-44(GCCTTTAAAAGG,-,0.00),-43(CCTTTAAAAGGT,+,0.00)
mm_127240.1	chr15	99590559	99590759	+	1	NA	NA	NA	-369	NM_009701	11830	Mm.45580	NM_009701	ENSMUSG00000044217	Aqp5	-	aquaporin 5	protein-coding	0.110000	0.701493	
mm_104454.1	chr11	95041219	95041419	-	1	NA	NA	NA	52	NM_133667	18604	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	0.110000	0.706468	
mm_119688.1	chr14	53538152	53538352	+	1	NA	NA	NA	715677	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.482587	
mm_55351.1	chr6	56800133	56800333	-	1	NA	NA	NA	-2420	NM_145958	210973	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0.025000	0.417910	-34(CTGTATAAAAAG,-,0.00)
mm_93011.1	chr10	87491373	87491573	-	1	NA	NA	NA	2187	NM_008553	17172	Mm.136217	NM_008553	ENSMUSG00000020052	Ascl1	AI225900|ASH1|Mash1|bHLHa46	achaete-scute family bHLH transcription factor 1	protein-coding	0.025000	0.452736	
mm_28035.1	chr3	83774571	83774771	-	1	NA	NA	NA	8350	NM_009144	20319	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0.000000	0.383085	
mm_79793.1	chr9	64022153	64022353	+	1	NA	NA	NA	-194	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.105000	0.716418	
mm_120436.1	chr14	65805975	65806175	+	1	NA	NA	NA	164	NM_023209	52033	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	0.100000	0.626866	
mm_135107.1	chr16	35769218	35769418	-	1	NA	NA	NA	38	NM_153550	224132	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0.140000	0.786070	
mm_71218.1	chr8	40898940	40899140	+	1	NA	NA	NA	-27193	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.055000	0.567164	
mm_92049.1	chr10	62497765	62497965	-	1	NA	NA	NA	9890	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.040000	0.477612	
mm_136977.1	chr17	15772191	15772391	+	1	NA	NA	NA	54295	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.000000	0.288557	-75(TTGCTTAAAAGC,-,0.00)
mm_70426.1	chr8	11497482	11497682	+	1	NA	NA	NA	14	NM_026995	69225	Mm.64911	NM_026995	ENSMUSG00000031505	Naxd	0710008K08Rik|2810407E01Rik|Carkd	NAD(P)HX dehydratase	protein-coding	0.130000	0.736318	
mm_80722.1	chr9	92309274	92309474	+	1	NA	NA	NA	-3	NM_001033184	78459	Mm.179195	NM_001033184	ENSMUSG00000074139	1700057G04Rik	-	RIKEN cDNA 1700057G04 gene	protein-coding	0.005000	0.393035	
mm_94679.1	chr11	17953874	17954074	+	1	NA	NA	NA	4	NR_131915	102633673	Mm.396603	NR_131915	ENSMUSG00000086468	Etaa1os	2900053O20Rik|4930542E09Rik	Ewing tumor-associated antigen 1, opposite strand	ncRNA	0.060000	0.577114	
mm_11811.1	chr2	43954172	43954372	+	1	NA	NA	NA	111052	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.005000	0.313433	
mm_113010.1	chr13	21910844	21911044	+	1	NA	NA	NA	-13895	NR_035500	100316716		NR_035500	ENSMUSG00000088148	Mir1983	mmu-mir-1983	microRNA 1983	ncRNA	0.025000	0.497512	
mm_962.1	chr1	58029865	58030065	+	1	NA	NA	NA	-4	NM_009676	11761	Mm.26787	NM_009676	ENSMUSG00000063558	Aox1	AI196512|AI255253|Ao|Aox-1|Aox-2|Aox2|Moro|Ro	aldehyde oxidase 1	protein-coding	0.025000	0.552239	
mm_115965.1	chr13	23914905	23915105	-	1	NA	NA	NA	2	NM_177016	319848	Mm.97959	NM_177016	ENSMUSG00000021336	Slc17a4	9130214H05Rik	solute carrier family 17 (sodium phosphate), member 4	protein-coding	0.015000	0.412935	
mm_94493.1	chr11	7063234	7063434	+	1	NA	NA	NA	-155	NM_009622	432530	Mm.259733	NM_009622	ENSMUSG00000020431	Adcy1	AC1|D11Bwg1392e|I-AC|brl|mKIAA4070	adenylate cyclase 1	protein-coding	0.125000	0.751244	
mm_27967.1	chr3	80688381	80688581	-	1	NA	NA	NA	114310	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.010000	0.393035	
mm_169070.1	chr13	28519977	28520177	+	1	NA	NA	NA	190796	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.005000	0.492537	
mm_52976.1	chr6	123260393	123260593	+	1	NA	NA	NA	-1614	NM_001163161	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.010000	0.447761	
mm_33846.1	chr4	135856044	135856244	+	1	NA	NA	NA	73	NM_010178	14105	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0.110000	0.716418	
mm_53756.1	chr6	145615665	145615865	+	1	NA	NA	NA	-198	NM_009449	22147	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0.050000	0.626866	
mm_6662.1	chr1	80276431	80276631	-	1	NA	NA	NA	-62587	NM_173425	241128	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding	0.010000	0.358209	
mm_80126.1	chr9	70580172	70580372	+	1	NA	NA	NA	37402	NM_025690	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.025000	0.422886	
mm_52286.1	chr6	108662241	108662441	+	1	NA	NA	NA	-1407	NR_104577	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.005000	0.363184	
mm_30671.1	chr4	11156376	11156576	+	1	NA	NA	NA	35	NM_021897	60599	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.110000	0.731343	
mm_88770.1	chr10	80335926	80336126	+	1	NA	NA	NA	5881	NM_139292	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.030000	0.567164	
mm_113969.1	chr13	51645610	51645810	+	1	NA	NA	NA	478	NM_025415	66197	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0.085000	0.582090	
mm_34403.1	chr4	145224274	145224474	+	1	NA	NA	NA	22496	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.025000	0.537313	
mm_83144.1	chr9	40455676	40455876	-	1	NA	NA	NA	-12	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.075000	0.661692	
mm_74279.1	chr8	125344244	125344444	+	1	NA	NA	NA	148366	NM_001081337	244668	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.015000	0.542289	-35(GTCTCTATAAAG,-,0.00)
mm_144677.1	chr18	34751711	34751911	+	1	NA	NA	NA	-278	NM_009860	12532	Mm.286602	NM_009860	ENSMUSG00000044201	Cdc25c	Cdc25	cell division cycle 25C	protein-coding	0.050000	0.477612	
mm_153636.1	chr19	44069561	44069761	-	1	NA	NA	NA	25	NM_145502	226144	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	0.130000	0.731343	
mm_62917.1	chr7	118129726	118129926	+	1	NA	NA	NA	-201	NM_019419	54208	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0.055000	0.587065	
mm_9959.1	chr1	191095995	191096195	-	1	NA	NA	NA	-2319	NM_030060	381319	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.000000	0.343284	
mm_168603.1	chr11	74925697	74925897	+	1	NA	NA	NA	1	NM_013761	27364	Mm.131443	NM_013761	ENSMUSG00000001323	Srr	M100034|Rgsc34|Srs	serine racemase	protein-coding	0.135000	0.716418	
mm_14493.1	chr2	131937037	131937237	+	1	NA	NA	NA	-13724	NM_001278257	26434	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion protein dublet	protein-coding	0.045000	0.567164	
mm_60281.1	chr7	43966648	43966848	+	1	NA	NA	NA	-3	NM_010645	16623	Mm.447819	NM_010645	ENSMUSG00000063133	Klk1b1	Klk1|mGK-1|mK1	kallikrein 1-related peptidase b1	protein-coding	0.000000	0.557214	
mm_18755.1	chr2	73437221	73437421	-	1	NA	NA	NA	16568	NM_001289722	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.045000	0.686567	
mm_122375.1	chr14	39473756	39473956	-	1	NA	NA	NA	-768	NM_008734	18183	Mm.258705	NM_008734	ENSMUSG00000041014	Nrg3	ska	neuregulin 3	protein-coding	0.065000	0.552239	
mm_47748.1	chr5	130255431	130255631	-	1	NA	NA	NA	-1	NM_023248	66711	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	Shwachman-Bodian-Diamond syndrome homolog (human)	protein-coding	0.090000	0.587065	
mm_26005.1	chr3	135281216	135281416	+	1	NA	NA	NA	95	NM_027208	69772	Mm.45121	NM_027208	ENSMUSG00000028167	Bdh2	1810026B04Rik|Dhrs6	3-hydroxybutyrate dehydrogenase, type 2	protein-coding	0.020000	0.447761	
mm_139522.1	chr17	56613357	56613557	+	1	NA	NA	NA	62	NM_018730	54217	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	0.095000	0.681592	
mm_151390.1	chr19	56417047	56417247	+	1	NA	NA	NA	20018	NM_007611	12369	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.010000	0.502488	
mm_38522.1	chr4	141424045	141424245	-	1	NA	NA	NA	3366	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.010000	0.601990	
mm_171606.1	chr4	149143333	149143533	-	1	NA	NA	NA	-5833	NM_027263	69928	Mm.260893	NM_027263	ENSMUSG00000073705	Apitd1	2610040C18Rik|2810407L01Rik|CENP-S	apoptosis-inducing, TAF9-like domain 1	protein-coding	0.040000	0.462687	-54(TGCTTTTAAAAG,-,0.00),-53(GCTTTTAAAAGT,+,0.00)
mm_84789.1	chr9	77045621	77045821	-	1	NA	NA	NA	60	NR_136923	26944	Mm.23199	NM_012033	ENSMUSG00000032357	Tinag	AI452335|TIN-ag	tubulointerstitial nephritis antigen	protein-coding	0.010000	0.422886	
mm_10483.1	chr2	14763027	14763227	+	1	NA	NA	NA	42485	NR_028497	625342	Mm.484784	NR_028497		Gm13315	OTTMUSG00000011384	lactate dehydrogenase A pseudogene	pseudo	0.010000	0.437811	
mm_170056.1	chr17	3044653	3044853	-	1	NA	NA	NA	39430	NR_003519	328734	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.055000	0.412935	
mm_152064.1	chr19	6532175	6532375	-	1	NA	NA	NA	10795	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.045000	0.616915	
mm_99690.1	chr11	106065978	106066178	+	1	NA	NA	NA	-29	NM_027346	70207	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	0.090000	0.601990	-23(CCATTTAGGGTC,+,0.00)
mm_119957.1	chr14	55094974	55095174	+	1	NA	NA	NA	290	NM_153083	105663	Mm.319204	NM_153083	ENSMUSG00000045691	Thtpa	AW122966	thiamine triphosphatase	protein-coding	0.080000	0.641791	
mm_146839.1	chr18	23022735	23022935	-	1	NA	NA	NA	15828	NM_001161483	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding	0.005000	0.383085	
mm_70114.1	chr7	142679608	142679808	-	1	NA	NA	NA	18	NM_001185083	16334	Mm.4946	NM_008387	ENSMUSG00000000215	Ins2	AA986540|Ins-2|InsII|Mody|Mody4	insulin II	protein-coding	0.005000	0.542289	-84(CCCTTAATGGGT,+,0.00),-33(GTCTATAAAGGT,-,0.00)
mm_138093.1	chr17	34039074	34039274	+	1	NA	NA	NA	36	NM_001317722	12815	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.045000	0.597015	
mm_53548.1	chr6	136828719	136828919	+	1	NA	NA	NA	-24	NM_178776	320135	Mm.386899	NM_178776	ENSMUSG00000047515	BC049715	-	cDNA sequence BC049715	protein-coding	0.005000	0.407960	
mm_164673.1	chr17	45573986	45574186	+	1	NA	NA	NA	-825	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.050000	0.567164	43(GGCCCTAAGAGG,-,0.00)
mm_57076.1	chr6	122580684	122580884	-	1	NA	NA	NA	21660	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.015000	0.422886	
mm_147526.1	chr18	52529769	52529969	-	1	NA	NA	NA	-2	NM_001286182	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.025000	0.502488	
mm_85898.1	chr9	111055846	111056046	-	1	NA	NA	NA	1298	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.030000	0.522388	
mm_1446.1	chr1	67230314	67230514	+	1	NA	NA	NA	107387	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.015000	0.467662	
mm_25945.1	chr3	131564682	131564882	+	1	NA	NA	NA	14	NM_011863	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.110000	0.731343	
mm_111237.1	chr12	84772838	84773038	-	1	NA	NA	NA	174	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.075000	0.631841	
mm_147919.1	chr18	65698400	65698600	-	1	NA	NA	NA	232	NM_177028	319888	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0.035000	0.527363	
mm_79025.1	chr9	45955237	45955437	+	1	NA	NA	NA	-88	NM_001289668	214597	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	0.085000	0.582090	-30(GGATTTAAAGGG,-,0.00)
mm_95597.1	chr11	53350658	53350858	+	1	NA	NA	NA	-9	NM_033565	93736	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.135000	0.781095	
mm_26324.1	chr3	142531780	142531980	+	1	NA	NA	NA	1544	NM_145545	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.010000	0.482587	
mm_137330.1	chr17	25045290	25045490	+	1	NA	NA	NA	29304	NM_134126	106633	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	0.005000	0.457711	
mm_41356.1	chr5	90506420	90506620	+	1	NA	NA	NA	-12429	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.025000	0.447761	
mm_75074.1	chr8	33844819	33845019	-	1	NA	NA	NA	84944	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.040000	0.522388	
mm_154538.1	chrM	13931	14131	-	1	NA	NA	NA	NA	NA									0.010000	0.318408	34(CTATTTATGGAG,+,0.00)
mm_51981.1	chr6	91978782	91978982	+	1	NA	NA	NA	-83	NM_172731	232237	Mm.295740	NM_172731	ENSMUSG00000034037	Fgd5	C330025N11Rik|ZFYVE23|mFLJ00274	FYVE, RhoGEF and PH domain containing 5	protein-coding	0.145000	0.800995	
mm_94469.1	chr11	6520917	6521117	+	1	NA	NA	NA	-59	NM_178440	246177	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0.005000	0.552239	
mm_19104.1	chr2	79454605	79454805	-	1	NA	NA	NA	1931	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.080000	0.542289	
mm_10612.1	chr2	19166855	19167055	+	1	NA	NA	NA	-32163	NM_001271563	70882	Mm.276696	NM_001081083	ENSMUSG00000037683	Armc3	4921513G22Rik	armadillo repeat containing 3	protein-coding	0.000000	0.393035	
mm_69747.1	chr7	140955720	140955920	-	1	NA	NA	NA	141	NM_030694	80876	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.020000	0.542289	
mm_104651.1	chr11	97573975	97574175	-	1	NA	NA	NA	1051	NM_018873	56013	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.050000	0.721393	
mm_168028.1	chrY	90738279	90738479	+	1	NA	NA	NA	16671	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.467662	
mm_11036.1	chr2	26973374	26973574	+	1	NA	NA	NA	58	NM_001290465	279028	Mm.330084	NM_001001322	ENSMUSG00000014852	Adamts13	ADAM-TS13|ADAMTS-13|Gm710|vWF-CP	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13	protein-coding	0.015000	0.562189	
mm_91067.1	chr10	19005504	19005704	-	1	NA	NA	NA	6359	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.025000	0.492537	
mm_116128.1	chr13	28952933	28953133	-	1	NA	NA	NA	649	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.135000	0.761194	
mm_23425.1	chr3	58715407	58715607	+	1	NA	NA	NA	22918	NR_045167	71301	Mm.254475	NR_045167	ENSMUSG00000097725	4930593A02Rik	4933440I01Rik	RIKEN cDNA 4930593A02 gene	ncRNA	0.020000	0.368159	
mm_6595.1	chr1	75278348	75278548	-	1	NA	NA	NA	-33	NM_009049	19711	Mm.4032	NM_009049	ENSMUSG00000033061	Resp18	AI851012	regulated endocrine-specific protein 18	protein-coding	0.020000	0.537313	
mm_2310.1	chr1	91626273	91626473	+	1	NA	NA	NA	85293	NM_023046	65247	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	0.025000	0.417910	
mm_67219.1	chr7	74492560	74492760	-	1	NA	NA	NA	62120	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.000000	0.442786	
mm_149948.1	chr19	27344653	27344853	+	1	NA	NA	NA	22134	NM_183179	240595	Mm.269759	NM_183179	ENSMUSG00000047298	Kcnv2	KV11.1	potassium channel, subfamily V, member 2	protein-coding	0.000000	0.477612	-68(GAACATATAAGG,-,0.00)
mm_12641.1	chr2	74711879	74712079	+	1	NA	NA	NA	-14	NM_010468	15434	Mm.430708	NM_010468	ENSMUSG00000079277	Hoxd3	Hox-4.1|Hox-5.5	homeobox D3	protein-coding	0.100000	0.651741	
mm_50025.1	chr6	41121261	41121461	+	1	NA	NA	NA	-85852	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.507463	
mm_5154.1	chr1	9943989	9944189	-	1	NA	NA	NA	29	NR_024067	73824	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	0.120000	0.696517	
mm_97836.1	chr11	83064930	83065130	+	1	NA	NA	NA	-82	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.000000	0.487562	82(GCTTTAATGCAG,+,0.00)
mm_92174.1	chr10	67598378	67598578	-	1	NA	NA	NA	-49523	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.010000	0.437811	
mm_118824.1	chr14	25581505	25581705	+	1	NA	NA	NA	-5199	NR_033492	77592	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0.020000	0.562189	
mm_99027.1	chr11	98939829	98940029	+	1	NA	NA	NA	218	NM_001177303	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.045000	0.542289	45(GCCTTAATGCCC,+,0.00)
mm_18696.1	chr2	71546284	71546484	-	1	NA	NA	NA	370	NM_010054	13392	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0.075000	0.661692	
mm_84140.1	chr9	59291277	59291477	-	1	NA	NA	NA	-195	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.065000	0.567164	
mm_74021.1	chr8	121590347	121590547	+	1	NA	NA	NA	-21	NM_026160	67443	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0.140000	0.701493	
mm_80600.1	chr9	86507030	86507230	+	1	NA	NA	NA	39976	NM_177208	320615	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0.005000	0.467662	
mm_103448.1	chr11	76174345	76174545	-	1	NA	NA	NA	5185	NM_026664	68299	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	0.010000	0.338308	
mm_85429.1	chr9	103507006	103507206	-	1	NA	NA	NA	-26778	NM_001002896	107993	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding	0.020000	0.557214	
mm_65666.1	chr7	28152721	28152921	-	1	NA	NA	NA	-16927	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.010000	0.542289	
mm_156599.1	chrX	152432971	152433171	+	1	NA	NA	NA	64043	NR_045452	75693	Mm.287381	NR_045451	ENSMUSG00000084885	3010001F23Rik	-	RIKEN cDNA 3010001F23 gene	ncRNA	0.030000	0.567164	
mm_52167.1	chr6	99003123	99003323	+	1	NA	NA	NA	25075	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.030000	0.582090	
mm_54521.1	chr6	35539694	35539894	-	1	NA	NA	NA	94	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.085000	0.656716	
mm_167562.1	chr9	40407988	40408188	-	1	NA	NA	NA	47676	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.020000	0.527363	64(GTCTTTATAAGA,-,0.00)
mm_11104.1	chr2	28192835	28193035	+	1	NA	NA	NA	-158	NM_001038613	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.070000	0.656716	
mm_168272.1	chr10	97479481	97479681	+	1	NA	NA	NA	81	NM_001190451	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.020000	0.492537	
mm_80837.1	chr9	97141026	97141226	+	1	NA	NA	NA	-30085	NM_138756	192287	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.000000	0.422886	-53(GCTTTTAAGCAC,+,0.00)
mm_7520.1	chr1	124045883	124046083	-	1	NA	NA	NA	-424	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.090000	0.706468	
mm_132345.1	chr16	33884972	33885172	+	1	NA	NA	NA	55407	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.050000	0.597015	
mm_133744.1	chr16	94010906	94011106	+	1	NA	NA	NA	-2169	NM_019500	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.030000	0.482587	
mm_34185.1	chr4	140701355	140701555	+	1	NA	NA	NA	-18	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.135000	0.691542	
mm_143506.1	chr17	71752779	71752979	-	1	NA	NA	NA	6	NM_146082	225004	Mm.134151	NM_146082	ENSMUSG00000044375	BC027072	-	cDNA sequence BC027072	protein-coding	0.015000	0.507463	
mm_137942.1	chr17	32685566	32685766	+	1	NA	NA	NA	7	NM_134127	106648	Mm.26539	NM_134127	ENSMUSG00000073424	Cyp4f15	AI787289|Cyp4f-15	cytochrome P450, family 4, subfamily f, polypeptide 15	protein-coding	0.005000	0.482587	
mm_70343.1	chr8	4613118	4613318	+	1	NA	NA	NA	48	NM_145591	233987	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.055000	0.606965	
mm_137564.1	chr17	27704380	27704580	+	1	NA	NA	NA	19241	NM_178365	23969	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.010000	0.562189	
mm_29529.1	chr3	116659238	116659438	-	1	NA	NA	NA	3339	NM_008246	15247	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	0.025000	0.373134	-34(GCCTTTAAAGAC,+,0.00),-34(GCCTTTAAAGAC,-,0.00),-33(CCTTTAAAGACG,+,0.00)
mm_70465.1	chr8	11913029	11913229	+	1	NA	NA	NA	72608	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	0.050000	0.577114	
mm_105914.1	chr11	114984156	114984356	-	1	NA	NA	NA	5630	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.000000	0.542289	
mm_122193.1	chr14	31780846	31781046	-	1	NA	NA	NA	49469	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.020000	0.388060	
mm_108035.1	chr12	73777315	73777515	+	1	NA	NA	NA	-123909	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.000000	0.388060	
mm_84572.1	chr9	69029038	69029238	-	1	NA	NA	NA	-260703	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.010000	0.442786	
mm_41932.1	chr5	105700697	105700897	+	1	NA	NA	NA	-13	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.075000	0.656716	77(GGCTTGAAAAAG,-,0.00)
mm_120335.1	chr14	63436440	63436640	+	1	NA	NA	NA	146	NM_177628	219148	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.135000	0.681592	
mm_146662.1	chr18	12121424	12121624	-	1	NA	NA	NA	13	NR_110356	338363	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	0.085000	0.696517	-63(GCCCCTTTAAGG,-,0.00),-61(CCCTTTAAGGAG,+,0.00)
mm_20326.1	chr2	127458220	127458420	-	1	NA	NA	NA	-13755	NM_029629	68126	Mm.288676	NM_029629	ENSMUSG00000027371	Fahd2a	1500003K14Rik|B430104H02Rik|Cgi-105|Fahd2	fumarylacetoacetate hydrolase domain containing 2A	protein-coding	0.015000	0.457711	
mm_69953.1	chr7	142372257	142372457	-	1	NA	NA	NA	-30	NM_001347542	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.120000	0.786070	
mm_119311.1	chr14	36316825	36317025	+	1	NA	NA	NA	221960	NM_175008	218921	Mm.212464	NM_175008	ENSMUSG00000096405	4930474N05Rik	-	RIKEN cDNA 4930474N05 gene	protein-coding	0.010000	0.353234	
mm_135884.1	chr16	64770844	64771044	-	1	NA	NA	NA	-5	NM_026273	67609	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	0.095000	0.676617	
mm_540.1	chr1	37998676	37998876	+	1	NA	NA	NA	766	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.025000	0.442786	76(AACCTTAAAAGA,-,0.00)
mm_6977.1	chr1	86353168	86353368	-	1	NA	NA	NA	-1141	NR_106184	102465895		NR_106184	ENSMUSG00000104627	Gm24148	Mir3535|mir-3535|mmu-mir-3535	predicted gene, 24148	ncRNA	0.010000	0.368159	
mm_86867.1	chr10	21993911	21994111	+	1	NA	NA	NA	121	NM_001161850	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.115000	0.661692	
mm_20971.1	chr2	151973213	151973413	-	1	NA	NA	NA	81	NM_001289151	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.055000	0.577114	
mm_47961.1	chr5	135713387	135713587	-	1	NA	NA	NA	22402	NR_106001	102466791		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.015000	0.512438	
mm_79717.1	chr9	61391773	61391973	+	1	NA	NA	NA	19507	NM_001083927	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.005000	0.492537	
mm_79004.1	chr9	45410049	45410249	+	1	NA	NA	NA	4072	NM_007503	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.000000	0.537313	
mm_171299.1	chr3	93520419	93520619	+	1	NA	NA	NA	23	NM_016740	20195	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0.065000	0.587065	
mm_148465.1	chr19	4082426	4082626	+	1	NA	NA	NA	38	NM_001160253	29866	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0.015000	0.547264	
mm_60466.1	chr7	44477914	44478114	+	1	NA	NA	NA	-6503	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.482587	
mm_147370.1	chr18	43438202	43438402	-	1	NA	NA	NA	-16	NM_001291455	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.075000	0.676617	
mm_121140.1	chr14	101893930	101894130	+	1	NA	NA	NA	53407	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.020000	0.477612	
mm_10567.1	chr2	18063802	18064002	+	1	NA	NA	NA	-683	NM_001252560	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.025000	0.467662	
mm_14932.1	chr2	151542501	151542701	+	1	NA	NA	NA	118	NM_001302078	14225	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.165000	0.751244	
mm_153099.1	chr19	32712255	32712455	-	1	NA	NA	NA	-57	NM_026487	67979	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.110000	0.706468	
mm_166486.1	chr5	147860376	147860576	+	1	NA	NA	NA	-152	NM_025624	66537	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.090000	0.691542	
mm_13666.1	chr2	114200117	114200317	+	1	NA	NA	NA	1215	NM_175466	228491	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	0.005000	0.398010	
mm_119787.1	chr14	54192172	54192372	+	1	NA	NA	NA	61657	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.025000	0.497512	
mm_5650.1	chr1	40529221	40529421	-	1	NA	NA	NA	13959	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.010000	0.422886	
mm_36263.1	chr4	63495950	63496150	-	1	NA	NA	NA	-59	NM_001008791	73750	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0.120000	0.736318	
mm_168176.1	chr10	56497146	56497346	+	1	NA	NA	NA	119946	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.055000	0.502488	
mm_49072.1	chr6	5786832	5787032	+	1	NA	NA	NA	61293	NM_001191026	13426	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0.010000	0.417910	
mm_91088.1	chr10	19015210	19015410	-	1	NA	NA	NA	100	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.105000	0.676617	
mm_25808.1	chr3	127789862	127790062	+	1	NA	NA	NA	49	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.095000	0.701493	
mm_73870.1	chr8	118891079	118891279	+	1	NA	NA	NA	-453359	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.000000	0.398010	
mm_115299.1	chr13	112001339	112001539	+	1	NA	NA	NA	133503	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.035000	0.532338	
mm_35633.1	chr4	43508647	43508847	-	1	NA	NA	NA	1721	NM_139305	230099	Mm.283682	NM_139305	ENSMUSG00000028463	Car9	CAIX|Ca9|MN/CA9	carbonic anhydrase 9	protein-coding	0.040000	0.597015	
mm_83265.1	chr9	42463712	42463912	-	1	NA	NA	NA	8414	NM_173038	272589	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0.015000	0.587065	
mm_158151.1	chrX	103472900	103473100	-	1	NA	NA	NA	10233	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.005000	0.248756	
mm_119494.1	chr14	47378292	47378492	+	1	NA	NA	NA	4532	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.025000	0.522388	
mm_31098.1	chr4	41755732	41755932	+	1	NA	NA	NA	-378	NM_001302511	14430	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	0.065000	0.616915	
mm_36034.1	chr4	57143653	57143853	-	1	NA	NA	NA	-597	NM_019427	54357	Mm.28217	NM_019427	ENSMUSG00000028434	Epb41l4b	6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2	erythrocyte membrane protein band 4.1 like 4b	protein-coding	0.105000	0.756219	
mm_116350.1	chr13	38960419	38960619	-	1	NA	NA	NA	18	NM_001170430	108652	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	0.145000	0.746269	
mm_20377.1	chr2	128467418	128467618	-	1	NA	NA	NA	-38167	NR_028590	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.015000	0.482587	
mm_38648.1	chr4	143268203	143268403	-	1	NA	NA	NA	31261	NM_010329	14726	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding	0.010000	0.547264	
mm_157354.1	chrX	37048566	37048766	-	1	NA	NA	NA	-179	NM_173779	245381	Mm.123697	NM_173779	ENSMUSG00000044400	Sowahd	A630014H24Rik|Ankrd58	sosondowah ankyrin repeat domain family member D	protein-coding	0.070000	0.676617	
mm_100702.1	chr11	3647390	3647590	-	1	NA	NA	NA	46	NR_110490	544752	Mm.390314	NR_002321	ENSMUSG00000056579	Tug1	AI316828	taurine upregulated gene 1	ncRNA	0.005000	0.318408	
mm_53470.1	chr6	134924455	134924655	+	1	NA	NA	NA	4154	NM_009875	12576	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	0.005000	0.457711	
mm_139784.1	chr17	65799113	65799313	+	1	NA	NA	NA	15858	NR_104465	70351	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0.005000	0.348259	
mm_35915.1	chr4	52814442	52814642	-	1	NA	NA	NA	-62	NR_040661	75367	Mm.159510	NR_040661	ENSMUSG00000070984	4930552N02Rik	-	RIKEN cDNA 4930552N02 gene	ncRNA	0.000000	0.482587	
mm_110004.1	chr12	15850520	15850720	-	1	NA	NA	NA	-33835	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.020000	0.547264	
mm_151625.1	chr19	3911656	3911856	-	1	NA	NA	NA	1018	NM_144870	225887	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0.020000	0.577114	
mm_104278.1	chr11	89733562	89733762	-	1	NA	NA	NA	-36726	NM_001327810	382543	Mm.60997	NM_172534	ENSMUSG00000047773	Ankfn1	4932411E22Rik|Gm1175|nmf9	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding	0.005000	0.527363	
mm_28961.1	chr3	100684849	100685049	-	1	NA	NA	NA	524	NM_010763	17156	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0.040000	0.368159	52(AACTTTATAAAG,-,0.00),54(CTTTATAAAGTA,+,0.00)
mm_130275.1	chr15	96699029	96699229	-	1	NA	NA	NA	569	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.105000	0.721393	
mm_29358.1	chr3	108554645	108554845	-	1	NA	NA	NA	-343	NR_028538	100217438		NR_028538		Scarna2	MBII-382	small Cajal body-specific RNA 2	ncRNA	0.045000	0.552239	-35(GTGTTTAAAAGA,-,0.00)
mm_66656.1	chr7	45714573	45714773	-	1	NA	NA	NA	534	NM_020011	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.020000	0.567164	
mm_7384.1	chr1	110922256	110922456	-	1	NA	NA	NA	55016	NM_001081386	227485	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding	0.005000	0.323383	
mm_141130.1	chr17	26201275	26201475	-	1	NA	NA	NA	-25	NM_008113	14570	Mm.1383	NM_008113	ENSMUSG00000073433	Arhgdig	Gdi5|RIP2|Rho-GDI-3|Rho-GDI2	Rho GDP dissociation inhibitor (GDI) gamma	protein-coding	0.150000	0.781095	
mm_54387.1	chr6	31218355	31218555	-	1	NA	NA	NA	19	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.025000	0.522388	
mm_54686.1	chr6	39420308	39420508	-	1	NA	NA	NA	-39	NM_018810	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.105000	0.696517	
mm_129681.1	chr15	81399714	81399914	-	1	NA	NA	NA	-120	NM_133726	70356	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	0.070000	0.616915	
mm_57976.1	chr6	135721663	135721863	-	1	NA	NA	NA	62850	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	0.015000	0.467662	50(TCCTTTTAAAAC,-,0.00),51(CCTTTTAAAACA,+,0.00)
mm_149802.1	chr19	23687569	23687769	+	1	NA	NA	NA	269	NM_028208	72351	Mm.474795	NM_028208	ENSMUSG00000074925	Ptar1	1700084D09Rik|2010013L17Rik|4930428J16Rik|AI449677	protein prenyltransferase alpha subunit repeat containing 1	protein-coding	0.165000	0.766169	
mm_17053.1	chr2	20969479	20969679	-	1	NA	NA	NA	705	NR_033225	433408	Mm.386941	NR_033225		Gm13375	OTTMUSG00000011664	predicted gene 13375	ncRNA	0.100000	0.671642	
mm_79366.1	chr9	54538889	54539089	+	1	NA	NA	NA	5	NM_173778	244885	Mm.358924	NM_173778	ENSMUSG00000046460	Sh2d7	4933412E14Rik	SH2 domain containing 7	protein-coding	0.050000	0.587065	
mm_78438.1	chr9	32078136	32078336	+	1	NA	NA	NA	-37900	NM_001195632	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.030000	0.452736	
mm_86570.1	chr10	11492036	11492236	+	1	NA	NA	NA	-117088	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.095000	0.731343	
mm_128328.1	chr15	38255203	38255403	-	1	NA	NA	NA	36100	NM_008757	18285	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0.000000	0.437811	
mm_34426.1	chr4	145432333	145432533	+	1	NA	NA	NA	-31777	NR_002888	545700	Mm.389595	NR_002888	ENSMUSG00000052912	Smarca5-ps	9230115A19Rik|OTTMUSG00000011029	SWI/SNF related, matrix associated, actin depenent ragulator of chromatin, subfamily a, member 5, pseudogene	pseudo	0.020000	0.497512	
mm_135948.1	chr16	74411684	74411884	-	1	NA	NA	NA	-872	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.065000	0.666667	
mm_47321.1	chr5	122465884	122466084	-	1	NA	NA	NA	36241	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.025000	0.462687	
mm_7582.1	chr1	125402728	125402928	-	1	NA	NA	NA	32899	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.010000	0.313433	
mm_160681.1	chr10	14760012	14760212	+	1	NA	NA	NA	-177	NM_008703	18101	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.040000	0.497512	
mm_1852.1	chr1	83835927	83836127	+	1	NA	NA	NA	382934	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.363184	
mm_68862.1	chr7	126414739	126414939	-	1	NA	NA	NA	31	NM_009844	12478	Mm.4360	NM_009844	ENSMUSG00000030724	Cd19	AW495831	CD19 antigen	protein-coding	0.020000	0.592040	
mm_129549.1	chr15	79414635	79414835	-	1	NA	NA	NA	-11432	NM_172608	223693	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	0.015000	0.497512	
mm_86911.1	chr10	22817691	22817891	+	1	NA	NA	NA	2337	NM_011545	21412	Mm.16497	NM_011545	ENSMUSG00000045680	Tcf21	Pod-1|Pod1|bHLHa23|capsulin|epc|epicardin	transcription factor 21	protein-coding	0.045000	0.606965	18(CACCATAAAGGG,-,0.00),20(CCATAAAGGGCC,+,0.00)
mm_62411.1	chr7	101223666	101223866	+	1	NA	NA	NA	78322	NM_001111111	73683	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.005000	0.348259	
mm_51362.1	chr6	72636151	72636351	+	1	NA	NA	NA	6420	NR_040421	100038714	Mm.321330	NR_040421		Gm15401	ENSMUSG00000072999|OTTMUSG00000021199	predicted gene 15401	ncRNA	0.020000	0.542289	
mm_133982.1	chr16	4558528	4558728	-	1	NA	NA	NA	1092	NM_031182	83383	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.065000	0.606965	
mm_159522.1	chr4	61594717	61594917	-	1	NA	NA	NA	1008	NM_001134644	100048885	Mm.422695	NM_001134644		Gm2083	-	major urinary protein LOC100048885	protein-coding	0.010000	0.393035	
mm_80420.1	chr9	77917096	77917296	+	1	NA	NA	NA	-169	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.045000	0.522388	
mm_156965.1	chrX	169990616	169990816	+	1	NA	NA	NA	-11799	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.065000	0.557214	
mm_70903.1	chr8	25640617	25640817	+	1	NA	NA	NA	140	NM_001081269	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.015000	0.452736	
mm_72717.1	chr8	85025545	85025745	+	1	NA	NA	NA	-367	NM_019652	56495	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	0.015000	0.462687	
mm_100670.1	chr11	3348589	3348789	-	1	NA	NA	NA	7452	NM_001034030	16886	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.015000	0.577114	
mm_23930.1	chr3	83766885	83767085	+	1	NA	NA	NA	664	NM_009144	20319	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0.075000	0.636816	
mm_11796.1	chr2	43555250	43555450	+	1	NA	NA	NA	25	NM_027552	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.000000	0.472637	
mm_97715.1	chr11	80183772	80183972	+	1	NA	NA	NA	0	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.065000	0.601990	
mm_168899.1	chr12	54729641	54729841	+	1	NA	NA	NA	-33847	NM_025456	66266	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	0.055000	0.547264	
mm_25698.1	chr3	122275467	122275667	+	1	NA	NA	NA	1153	NM_153806	99480	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	0.005000	0.437811	
mm_70507.1	chr8	12926097	12926297	+	1	NA	NA	NA	10304	NM_178076	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.025000	0.567164	
mm_141612.1	chr17	32810609	32810809	-	1	NA	NA	NA	-778	NM_183177	240063	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	0.000000	0.422886	
mm_75269.1	chr8	40660324	40660524	-	1	NA	NA	NA	-14653	NM_010086	13526	Mm.67403	NM_010086	ENSMUSG00000046723	Adam24	Dtgn5	a disintegrin and metallopeptidase domain 24 (testase 1)	protein-coding	0.025000	0.462687	
mm_133937.1	chr16	3884422	3884622	-	1	NA	NA	NA	-97	NM_029090	74763	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|Nat15	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0.105000	0.721393	
mm_147708.1	chr18	60812151	60812351	-	1	NA	NA	NA	175	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.025000	0.597015	
mm_66209.1	chr7	34313395	34313595	-	1	NA	NA	NA	-27886	NM_172741	233103	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	0.165000	0.771144	
mm_172727.1	chr8	75033625	75033825	+	1	NA	NA	NA	39	NM_011622	21968	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.105000	0.701493	
mm_162904.1	chr10	116177329	116177529	+	1	NA	NA	NA	78	NM_001161840	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	0.030000	0.587065	
mm_33192.1	chr4	126260287	126260487	+	1	NA	NA	NA	-2018	NM_013718	27096	Mm.8392	NM_013718	ENSMUSG00000028847	Trappc3	1110058K12Rik|AI835942|AU019197|Bet3	trafficking protein particle complex 3	protein-coding	0.015000	0.402985	
mm_63990.1	chr7	140096871	140097071	+	1	NA	NA	NA	3575	NM_009475	22264	Mm.439707	NM_009475	ENSMUSG00000025467	Prap1	Upa	proline-rich acidic protein 1	protein-coding	0.020000	0.557214	
mm_149201.1	chr19	9978697	9978897	+	1	NA	NA	NA	-1803	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.005000	0.557214	
mm_26593.1	chr3	151437967	151438167	+	1	NA	NA	NA	185	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.040000	0.587065	
mm_112902.1	chr13	20899513	20899713	+	1	NA	NA	NA	105500	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.502488	
mm_77398.1	chr8	120428185	120428385	-	1	NA	NA	NA	-60581	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.020000	0.537313	-33(GGTTATTAAAGG,-,0.00)
mm_169421.1	chr1	45311623	45311823	+	1	NA	NA	NA	185	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.020000	0.487562	
mm_100080.1	chr11	115463748	115463948	+	1	NA	NA	NA	1375	NM_001080934	217316	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	0.020000	0.517413	
mm_122773.1	chr14	54409294	54409494	-	1	NA	NA	NA	78	NM_001253680	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.010000	0.487562	
mm_11413.1	chr2	31615426	31615626	+	1	NA	NA	NA	3105	NR_105964	102466214		NR_105964	ENSMUSG00000098904	Mir6998	Gm28024|mmu-mir-6998	microRNA 6998	ncRNA	0.010000	0.616915	
mm_72008.1	chr8	70700196	70700396	+	1	NA	NA	NA	2557	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.085000	0.601990	-13(GGCTCTAAGGGG,-,0.00)
mm_117696.1	chr13	94294967	94295167	-	1	NA	NA	NA	-9236	NM_001346609	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.015000	0.552239	
mm_119209.1	chr14	32991285	32991485	+	1	NA	NA	NA	3	NM_026253	67580	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0.010000	0.482587	
mm_170340.1	chr1	84737948	84738148	-	1	NA	NA	NA	-41827	NM_152915	227325	Mm.292560	NM_152915	ENSMUSG00000036766	Dner	A930026D19Rik|BET|Bret	delta/notch-like EGF repeat containing	protein-coding	0.010000	0.477612	
mm_116505.1	chr13	45001981	45002181	-	1	NA	NA	NA	15	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.210000	0.850746	
mm_127178.1	chr15	98983323	98983523	+	1	NA	NA	NA	-2542	NR_045991	75951	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.015000	0.472637	
mm_70926.1	chr8	25812940	25813140	+	1	NA	NA	NA	4566	NM_011485	20845	Mm.293314	NM_011485	ENSMUSG00000031574	Star	AV363654|D8Ertd419e|stARD1	steroidogenic acute regulatory protein	protein-coding	0.005000	0.442786	
mm_165233.1	chr2	58780361	58780561	+	1	NA	NA	NA	25277	NM_029692	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.010000	0.378109	
mm_156029.1	chrX	107255677	107255877	+	1	NA	NA	NA	-101	NM_001177781	213439	Mm.383562	NM_001033251	ENSMUSG00000073008	Gpr174	Gm376|Lypsr3	G protein-coupled receptor 174	protein-coding	0.000000	0.407960	
mm_21686.1	chr2	164431199	164431399	-	1	NA	NA	NA	11889	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.055000	0.567164	
mm_148708.1	chr19	5802020	5802220	+	1	NA	NA	NA	552	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.055000	0.522388	
mm_24776.1	chr3	95536811	95537011	+	1	NA	NA	NA	10125	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.020000	0.442786	
mm_28173.1	chr3	88000091	88000291	-	1	NA	NA	NA	165	NM_007529	12032	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0.145000	0.766169	
mm_130674.1	chr15	100675258	100675458	-	1	NA	NA	NA	-5858	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.030000	0.527363	41(CCTTTAAAATGA,+,0.00)
mm_70089.1	chr7	142655947	142656147	-	1	NA	NA	NA	-1051	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.010000	0.482587	
mm_57150.1	chr6	122729420	122729620	-	1	NA	NA	NA	13225	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.005000	0.417910	
mm_983.1	chr1	58445183	58445383	+	1	NA	NA	NA	132	NM_022988	65102	Mm.340248	NM_022988	ENSMUSG00000026036	Nif3l1	1110030G24Rik	Ngg1 interacting factor 3-like 1 (S. pombe)	protein-coding	0.060000	0.626866	
mm_134880.1	chr16	28930074	28930274	-	1	NA	NA	NA	-476	NM_177718	239796	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.070000	0.567164	-53(GCCCCTAAAGAG,-,0.00),-51(CCCTAAAGAGGG,+,0.00)
mm_142970.1	chr17	56133691	56133891	-	1	NA	NA	NA	61	NM_013662	20359	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0.010000	0.562189	
mm_123351.1	chr14	63142320	63142520	-	1	NA	NA	NA	19958	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.467662	
mm_5160.1	chr1	10009064	10009264	-	1	NA	NA	NA	-28	NM_145692	69312	Mm.386795	NM_027033	ENSMUSG00000025916	Ppp1r42	1700011J18Rik|4930418G15Rik|Lrrc67|TLRR	protein phosphatase 1, regulatory subunit 42	protein-coding	0.055000	0.597015	
mm_132117.1	chr16	31664087	31664287	+	1	NA	NA	NA	252	NM_001252434	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.155000	0.791045	
mm_20972.1	chr2	151973263	151973463	-	1	NA	NA	NA	31	NM_001289151	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.050000	0.582090	
mm_191.1	chr1	15803159	15803359	+	1	NA	NA	NA	-2387	NM_009352	21749	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	0.000000	0.497512	
mm_94417.1	chr11	5863891	5864091	+	1	NA	NA	NA	2125	NM_001291857	11568	Mm.3317	NM_009636	ENSMUSG00000020473	Aebp1	ACLP	AE binding protein 1	protein-coding	0.000000	0.507463	
mm_106923.1	chr12	8332123	8332323	+	1	NA	NA	NA	18790	NM_021429	58240	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.020000	0.532338	
mm_108383.1	chr12	80878383	80878583	+	1	NA	NA	NA	45964	NR_033786	67340	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.000000	0.447761	
mm_111437.1	chr12	93273641	93273841	-	1	NA	NA	NA	171082	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0.000000	0.402985	
mm_843.1	chr1	51747013	51747213	+	1	NA	NA	NA	168865	NM_001290982	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.060000	0.507463	67(CTGTATTAAAAG,-,0.00)
mm_11731.1	chr2	37452159	37452359	+	1	NA	NA	NA	5	NM_001033960	227800	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	0.105000	0.741294	
mm_172965.1	chr9	88833592	88833792	+	1	NA	NA	NA	-5472	NM_001177858	666731	Mm.446951	NM_001177858	ENSMUSG00000067399	Trim43c	EG666731|Trim43	tripartite motif-containing 43C	protein-coding	0.000000	0.368159	
mm_70491.1	chr8	12572726	12572926	+	1	NA	NA	NA	-223	NM_024279	78634	Mm.116871	NM_024279	ENSMUSG00000010435	Spaca7	1700094C09Rik	sperm acrosome associated 7	protein-coding	0.010000	0.492537	-35(GTTTTTATAGAT,+,0.00)
mm_60723.1	chr7	45336823	45337023	+	1	NA	NA	NA	1654	NM_010473	15464	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.005000	0.547264	
mm_92365.1	chr10	75940513	75940713	-	1	NA	NA	NA	59	NM_001277132	333670	Mm.291320	NM_001037714	ENSMUSG00000050157	Gm867	Gm736	predicted gene 867	protein-coding	0.000000	0.557214	
mm_85226.1	chr9	97110947	97111147	-	1	NA	NA	NA	-6	NM_138756	192287	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.105000	0.701493	
mm_147935.1	chr18	66019875	66020075	-	1	NA	NA	NA	-17340	NM_001172062	70361	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	0.005000	0.522388	
mm_95646.1	chr11	53723679	53723879	+	1	NA	NA	NA	2985	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.015000	0.437811	
mm_48792.1	chr5	148746715	148746915	-	1	NA	NA	NA	4975	NR_028285	70138	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.015000	0.472637	
mm_123840.1	chr14	70642174	70642374	-	1	NA	NA	NA	-6	NM_008004	14171	Mm.12814	NM_008004	ENSMUSG00000022101	Fgf17	-	fibroblast growth factor 17	protein-coding	0.035000	0.626866	-77(CTCCTTTTAAGG,-,0.00),-76(TCCTTTTAAGGC,-,0.00),-75(CCTTTTAAGGCT,+,0.00)
mm_125302.1	chr15	37233196	37233396	+	1	NA	NA	NA	260	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	0.055000	0.567164	
mm_43248.1	chr5	130171746	130171946	+	1	NA	NA	NA	27	NM_001199059	56715	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.175000	0.791045	
mm_24542.1	chr3	93293014	93293214	+	1	NA	NA	NA	-26635	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.010000	0.502488	
mm_143149.1	chr17	57222779	57222979	-	1	NA	NA	NA	5257	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.020000	0.577114	
mm_9613.1	chr1	176213863	176214063	-	1	NA	NA	NA	-21	NM_001195816	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	0.040000	0.522388	
mm_12995.1	chr2	90885789	90885989	+	1	NA	NA	NA	103	NM_026161	67445	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0.105000	0.706468	
mm_23015.1	chr3	34560247	34560447	+	1	NA	NA	NA	-34	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA	0.005000	0.412935	
mm_149340.1	chr19	10850277	10850477	+	1	NA	NA	NA	7833	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.005000	0.477612	
mm_125251.1	chr15	35200853	35201053	+	1	NA	NA	NA	-45147	NM_019635	56274	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0.010000	0.557214	
mm_131697.1	chr16	20694966	20695166	+	1	NA	NA	NA	9	NM_133778	78408	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0.020000	0.547264	
mm_66525.1	chr7	45126844	45127044	-	1	NA	NA	NA	1	NR_001277	27208		NR_001277	ENSMUSG00000065628	Snord33	Rnu33|U33	small nucleolar RNA, C/D box 33	snoRNA	0.030000	0.562189	
mm_69010.1	chr7	126704087	126704287	-	1	NA	NA	NA	33	NM_001301374	12721	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.020000	0.572139	
mm_135123.1	chr16	35841523	35841723	-	1	NA	NA	NA	29759	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.015000	0.358209	
mm_38289.1	chr4	136890320	136890520	-	1	NA	NA	NA	2494	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.030000	0.646766	
mm_96622.1	chr11	69126134	69126334	+	1	NA	NA	NA	-143	NM_011786	23801	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	0.050000	0.621891	
mm_50648.1	chr6	51464389	51464589	+	1	NA	NA	NA	5405	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.005000	0.422886	
mm_118476.1	chr14	11618527	11618727	+	1	NA	NA	NA	65074	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.015000	0.452736	
mm_121824.1	chr14	20479766	20479966	-	1	NA	NA	NA	267	NM_001110794	11750	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	0.080000	0.631841	
mm_36877.1	chr4	107177727	107177927	-	1	NA	NA	NA	539	NM_025617	66526	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0.015000	0.388060	
mm_77593.1	chr8	123891834	123892034	-	1	NA	NA	NA	2841	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.095000	0.557214	
mm_156542.1	chrX	151169540	151169740	+	1	NA	NA	NA	-28438	NM_001271679	279561	Mm.441474	NM_001271678	ENSMUSG00000041245	Wnk3	Prkwnk3|Wnk3-ps	WNK lysine deficient protein kinase 3	protein-coding	0.110000	0.666667	
mm_57813.1	chr6	129462352	129462552	-	1	NA	NA	NA	10327	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.383085	
mm_152072.1	chr19	6571482	6571682	-	1	NA	NA	NA	-28512	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.020000	0.487562	-34(GAGTATAAATAG,-,0.00)
mm_165938.1	chr4	74826108	74826308	+	1	NA	NA	NA	452078	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.005000	0.497512	
mm_124556.1	chr14	122913658	122913858	-	1	NA	NA	NA	-593	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.020000	0.452736	
mm_49572.1	chr6	30640594	30640794	+	1	NA	NA	NA	1476	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.035000	0.502488	
mm_117099.1	chr13	59822953	59823153	-	1	NA	NA	NA	94	NM_153538	214290	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.125000	0.736318	
mm_153663.1	chr19	44395685	44395885	-	1	NA	NA	NA	11924	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.412935	
mm_149878.1	chr19	25236899	25237099	+	1	NA	NA	NA	-203	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.085000	0.701493	
mm_107160.1	chr12	24575728	24575928	+	1	NA	NA	NA	3541	NM_001161406	195733	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead-like 1 (Drosophila)	protein-coding	0.010000	0.343284	14(GTTTTTATACAG,+,0.00)
mm_94926.1	chr11	29526349	29526549	+	1	NA	NA	NA	52	NM_133767	76784	Mm.285429	NM_133767	ENSMUSG00000020459	Mtif2	2310038D14Rik|2410112O06Rik|IF-2(Mt)|IF-2mt|IF2(mt)	mitochondrial translational initiation factor 2	protein-coding	0.080000	0.636816	
mm_78801.1	chr9	44047478	44047678	+	1	NA	NA	NA	4194	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.025000	0.601990	
mm_163969.1	chr14	55116315	55116515	-	1	NA	NA	NA	520	NM_177049	319984	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.010000	0.502488	
mm_103142.1	chr11	70239113	70239313	-	1	NA	NA	NA	639	NM_173742	52898	Mm.29852	NM_173742	ENSMUSG00000040904	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	0.030000	0.507463	
mm_103005.1	chr11	69695737	69695937	-	1	NA	NA	NA	261	NM_011614	21944	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0.070000	0.726368	
mm_21914.1	chr2	166695655	166695855	-	1	NA	NA	NA	18077	NM_177782	277360	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.010000	0.432836	
mm_85518.1	chr9	106438261	106438461	-	1	NA	NA	NA	-125	NM_001276442	109652	Mm.7165	NM_025371	ENSMUSG00000023262	Acy1	1110014J22Rik|Acy-1	aminoacylase 1	protein-coding	0.055000	0.656716	
mm_130700.1	chr15	100687022	100687222	-	1	NA	NA	NA	798	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.040000	0.537313	
mm_140902.1	chr17	24150774	24150974	-	1	NA	NA	NA	48	NM_001286662	18607	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	0.010000	0.547264	
mm_103035.1	chr11	69758277	69758477	-	1	NA	NA	NA	256	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.050000	0.601990	
mm_77439.1	chr8	121590222	121590422	-	1	NA	NA	NA	-146	NM_026160	67443	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0.130000	0.726368	
mm_120774.1	chr14	73879418	73879618	+	1	NA	NA	NA	326732	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	0.005000	0.407960	-27(CCATATAAAAAG,-,0.00)
mm_138965.1	chr17	44735675	44735875	+	1	NA	NA	NA	401	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.085000	0.671642	
mm_58606.1	chr7	5056624	5056824	+	1	NA	NA	NA	-2	NM_001290432	232821	Mm.482157	NM_146178	ENSMUSG00000035228	Ccdc106	BC018462	coiled-coil domain containing 106	protein-coding	0.075000	0.686567	
mm_49936.1	chr6	39573773	39573973	+	1	NA	NA	NA	-3	NM_178873	57869	Mm.247957	NM_178873	ENSMUSG00000046947	Adck2	AA408112|BB006057	aarF domain containing kinase 2	protein-coding	0.075000	0.631841	-45(GCCCCTTTAAGG,-,0.00),-43(CCCTTTAAGGAG,+,0.00),-42(CCTTTAAGGAGC,+,0.00)
mm_99458.1	chr11	102434968	102435168	+	1	NA	NA	NA	4746	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.020000	0.587065	
mm_26208.1	chr3	138733402	138733602	+	1	NA	NA	NA	-6518	NR_040545	74635	Mm.410825	NR_040545	ENSMUSG00000105838	4930425O10Rik	-	RIKEN cDNA 4930425O10 gene	ncRNA	0.010000	0.412935	
mm_49702.1	chr6	34354038	34354238	+	1	NA	NA	NA	-26	NM_008012	14187	Mm.5378	NM_008012	ENSMUSG00000029762	Akr1b8	FR-1|Fgfrp|Fgrp	aldo-keto reductase family 1, member B8	protein-coding	0.040000	0.552239	-97(CACTCTTAAAAG,-,0.00)
mm_59668.1	chr7	28376632	28376832	+	1	NA	NA	NA	2496	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.040000	0.517413	
mm_22939.1	chr3	31902554	31902754	+	1	NA	NA	NA	-49	NM_028231	72413	Mm.64790	NM_028231	ENSMUSG00000037610	Kcnmb2	2700049B16Rik|3110031N04Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 2	protein-coding	0.030000	0.447761	-13(CGCTTTTAAAAA,-,0.00),-12(GCTTTTAAAAAC,+,0.00),-12(GCTTTTAAAAAC,-,0.00)
mm_69659.1	chr7	139978628	139978828	-	1	NA	NA	NA	27	NM_001347614	381933	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0.065000	0.631841	
mm_84791.1	chr9	77045706	77045906	-	1	NA	NA	NA	-25	NM_012033	26944	Mm.23199	NM_012033	ENSMUSG00000032357	Tinag	AI452335|TIN-ag	tubulointerstitial nephritis antigen	protein-coding	0.005000	0.378109	-40(AACCATAAAAGG,-,0.00)
mm_142272.1	chr17	39847748	39847948	-	1	NA	NA	NA	4851	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.090000	0.611940	
mm_88226.1	chr10	70440598	70440798	+	1	NA	NA	NA	30	NM_001143777	71721	Mm.477813	NM_024244	ENSMUSG00000043259	Fam13c	1200015N20Rik|C030038O19Rik|mKIAA1796	family with sequence similarity 13, member C	protein-coding	0.065000	0.666667	
mm_101629.1	chr11	36168963	36169163	-	1	NA	NA	NA	-188974	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.020000	0.542289	
mm_33352.1	chr4	129382596	129382796	+	1	NA	NA	NA	-4668	NM_028603	73680	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	0.000000	0.492537	
mm_18764.1	chr2	73459575	73459775	-	1	NA	NA	NA	-5786	NM_001289722	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.015000	0.487562	
mm_70071.1	chr7	142652987	142653187	-	1	NA	NA	NA	1909	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.000000	0.452736	46(TACCCTAAAAAG,-,0.00),48(CCCTAAAAAGCA,+,0.00)
mm_26373.1	chr3	142561615	142561815	+	1	NA	NA	NA	1219	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.030000	0.447761	
mm_42592.1	chr5	117363433	117363633	+	1	NA	NA	NA	6228	NM_021539	59043	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	0.030000	0.601990	
mm_89661.1	chr10	97483312	97483512	+	1	NA	NA	NA	1081	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.005000	0.462687	
mm_157308.1	chrX	20931406	20931606	-	1	NA	NA	NA	49	NM_008823	18636	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	0.000000	0.537313	
mm_11955.1	chr2	52982649	52982849	+	1	NA	NA	NA	124881	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.010000	0.427861	
mm_53912.1	chr6	3988821	3989021	-	1	NA	NA	NA	-63	NR_138566	21789	Mm.25612	NM_009364	ENSMUSG00000029664	Tfpi2	AV000670|PP5/TFPI-2	tissue factor pathway inhibitor 2	protein-coding	0.005000	0.462687	
mm_86430.1	chr10	3863598	3863798	+	1	NA	NA	NA	-8969	NM_001033253	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.020000	0.407960	
mm_75382.1	chr8	45382106	45382306	-	1	NA	NA	NA	85	NM_153535	212326	Mm.51259	NM_153535	ENSMUSG00000070044	Fam149a	AW213256|mKIAA4166	family with sequence similarity 149, member A	protein-coding	0.015000	0.547264	
mm_130498.1	chr15	98808212	98808412	-	1	NA	NA	NA	-387	NM_001013741	13199	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.020000	0.582090	
mm_139540.1	chr17	56709968	56710168	+	1	NA	NA	NA	6853	NM_178926	106639	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0.020000	0.611940	
mm_55740.1	chr6	77511743	77511943	-	1	NA	NA	NA	-129368	NR_045141	70753	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	0.010000	0.432836	
mm_18915.1	chr2	76736907	76737107	-	1	NA	NA	NA	61692	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.482587	
mm_100548.1	chr11	120713842	120714042	+	1	NA	NA	NA	-11	NM_153545	217366	Mm.347545	NM_153545	ENSMUSG00000025145	Lrrc45	BC023296	leucine rich repeat containing 45	protein-coding	0.070000	0.616915	
mm_65046.1	chr7	18616403	18616603	-	1	NA	NA	NA	-2	NM_020261	56868	Mm.333617	NM_020261	ENSMUSG00000074359	Psg23	1620401C02Rik|cea11	pregnancy-specific glycoprotein 23	protein-coding	0.005000	0.447761	
mm_53890.1	chr6	3376960	3377160	-	1	NA	NA	NA	22511	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.010000	0.393035	
mm_37837.1	chr4	132053362	132053562	-	1	NA	NA	NA	-4384	NM_001128606	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.005000	0.283582	
mm_158381.1	chrX	135720534	135720734	-	1	NA	NA	NA	39	NM_030106	78478	Mm.391317	NM_030106	ENSMUSG00000060726	Tmsb15a	1700129I15Rik|Tb15a|Tmsbl1|Tmsl8	thymosin beta 15a	protein-coding	0.005000	0.512438	
mm_71113.1	chr8	35999764	35999964	+	1	NA	NA	NA	-94964	NM_172911	244418	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.020000	0.507463	
mm_91425.1	chr10	32889914	32890114	-	1	NA	NA	NA	-99	NM_001025286	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding	0.155000	0.810945	
mm_50577.1	chr6	49052837	49053037	+	1	NA	NA	NA	16419	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.005000	0.467662	
mm_94246.1	chr11	3330581	3330781	+	1	NA	NA	NA	-50	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.025000	0.567164	
mm_23028.1	chr3	34649896	34650096	+	1	NA	NA	NA	1	NM_011443	20674	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0.040000	0.507463	89(GCCTCTTTAAGA,-,0.00)
mm_125903.1	chr15	75969200	75969400	+	1	NA	NA	NA	18	NM_001347040	69020	Mm.294295	NM_001081065	ENSMUSG00000034429	Zfp707	1500031N24Rik|AI451708|AW495315	zinc finger protein 707	protein-coding	0.125000	0.686567	
mm_136562.1	chr17	3199503	3199703	+	1	NA	NA	NA	84631	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.000000	0.378109	
mm_39584.1	chr5	23482325	23482525	+	1	NA	NA	NA	47996	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.005000	0.323383	
mm_1221.1	chr1	62738264	62738464	+	1	NA	NA	NA	35047	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.035000	0.542289	
mm_78188.1	chr9	21265205	21265405	+	1	NA	NA	NA	20	NM_153583	235040	Mm.440165	NM_153583	ENSMUSG00000002820	Atg4d	9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4	autophagy related 4D, cysteine peptidase	protein-coding	0.075000	0.661692	
mm_100467.1	chr11	119916565	119916765	+	1	NA	NA	NA	2855	NM_001085498	208092	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.015000	0.592040	
mm_104057.1	chr11	86577187	86577387	-	1	NA	NA	NA	6871	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.005000	0.542289	-34(TTCTATATAAGG,-,0.00)
mm_171103.1	chr3	133544133	133544333	-	1	NA	NA	NA	157	NM_001346736	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.065000	0.582090	
mm_111235.1	chr12	84772777	84772977	-	1	NA	NA	NA	235	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.055000	0.592040	
mm_5248.1	chr1	16520020	16520220	-	1	NA	NA	NA	-818	NM_001111272	29819	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen (RNA binding protein) homolog 2 (Drosophila)	protein-coding	0.075000	0.577114	
mm_134131.1	chr16	10447280	10447480	-	1	NA	NA	NA	-30	NM_001013778	383103	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0.050000	0.616915	
mm_148904.1	chr19	6941817	6942017	+	1	NA	NA	NA	56	NM_007522	12015	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.085000	0.701493	
mm_130387.1	chr15	97859147	97859347	-	1	NA	NA	NA	-14745	NM_001204278	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.020000	0.517413	
mm_84060.1	chr9	58199594	58199794	-	1	NA	NA	NA	2021	NM_001161535	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.065000	0.567164	
mm_171762.1	chr5	105797637	105797837	-	1	NA	NA	NA	-78831	NR_030777	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.045000	0.437811	
mm_21376.1	chr2	157346583	157346783	-	1	NA	NA	NA	-28	NM_010285	14601	Mm.389327	NM_010285	ENSMUSG00000027643	Ghrh	GRF|Ghrf	growth hormone releasing hormone	protein-coding	0.025000	0.601990	
mm_145688.1	chr18	61726322	61726522	+	1	NA	NA	NA	32	NR_029432	68982	Mm.441992	NR_029432	ENSMUSG00000098702	1500015A07Rik	-	RIKEN cDNA 1500015A07 gene	ncRNA	0.090000	0.631841	
mm_92728.1	chr10	80843914	80844114	-	1	NA	NA	NA	25	NM_001013758	237403	Mm.40213	NM_001013758	ENSMUSG00000051067	Lingo3	AI851712|LERN2	leucine rich repeat and Ig domain containing 3	protein-coding	0.155000	0.796020	
mm_96293.1	chr11	63132563	63132763	+	1	NA	NA	NA	94	NM_001302259	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.110000	0.726368	
mm_47749.1	chr5	130256707	130256907	-	1	NA	NA	NA	-230	NM_001015876	100929	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0.040000	0.537313	
mm_161187.1	chr13	49248640	49248840	-	1	NA	NA	NA	-34	NM_028340	66329	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.010000	0.567164	
mm_47153.1	chr5	120612478	120612678	-	1	NA	NA	NA	11	NM_029096	100764	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0.080000	0.641791	81(GGCTTTAAATGT,-,0.00)
mm_28015.1	chr3	83043796	83043996	-	1	NA	NA	NA	5967	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.030000	0.402985	
mm_161667.1	chr17	13052196	13052396	-	1	NA	NA	NA	-16	NM_001013832	436440	Mm.335670	NM_001013832	ENSMUSG00000071311	Gpr31b	12-HETER|GPR31c(t)|Gpr31|Gpr31c	G protein-coupled receptor 31, D17Leh66b region	protein-coding	0.015000	0.582090	
mm_49080.1	chr6	6330218	6330418	+	1	NA	NA	NA	81659	NR_136905	101056138	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0.025000	0.427861	28(GCCTTTAAGCCC,+,0.00)
mm_117898.1	chr13	99425329	99425529	-	1	NA	NA	NA	-12603	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.497512	
mm_94517.1	chr11	8708835	8709035	+	1	NA	NA	NA	-44400	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.020000	0.537313	46(GCCTATTTGAGG,-,0.00)
mm_84718.1	chr9	73968590	73968790	-	1	NA	NA	NA	-35123	NM_001081153	208898	Mm.41035	NM_001081153	ENSMUSG00000062151	Unc13c	1500037O19Rik|AU019458|D9Ertd414e|Munc13-3|Unc13h3	unc-13 homolog C (C. elegans)	protein-coding	0.050000	0.557214	
mm_13610.1	chr2	113365433	113365633	+	1	NA	NA	NA	37797	NM_010230	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.020000	0.517413	
mm_32231.1	chr4	102254650	102254850	+	1	NA	NA	NA	8	NM_001177983	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.030000	0.437811	-36(GACTTTAAAAGC,-,0.00),-35(ACTTTAAAAGCA,+,0.00)
mm_88439.1	chr10	77545089	77545289	+	1	NA	NA	NA	14841	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.015000	0.497512	
mm_147929.1	chr18	65969987	65970187	-	1	NA	NA	NA	91	NM_145493	225644	Mm.192285	NM_145493	ENSMUSG00000024519	Cplx4	A930004D23Rik|CPXIV|Gm957	complexin 4	protein-coding	0.020000	0.398010	
mm_124980.1	chr15	20568673	20568873	+	1	NA	NA	NA	97977	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.010000	0.318408	
mm_143164.1	chr17	57225009	57225209	-	1	NA	NA	NA	3027	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.045000	0.567164	
mm_147039.1	chr18	34862614	34862814	-	1	NA	NA	NA	1507	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.055000	0.597015	
mm_140847.1	chr17	23676544	23676744	-	1	NA	NA	NA	805	NM_001161746	27279	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	0.075000	0.651741	
mm_74213.1	chr8	123949324	123949524	+	1	NA	NA	NA	-159	NM_172288	234865	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	0.115000	0.661692	
mm_168157.1	chr10	4253667	4253867	-	1	NA	NA	NA	-12562	NM_031185	83397	Mm.27481	NM_031185	ENSMUSG00000038587	Akap12	AI317366|SSeCKS|Srcs5|Tsga12	A kinase (PRKA) anchor protein (gravin) 12	protein-coding	0.010000	0.567164	
mm_11655.1	chr2	34963618	34963818	+	1	NA	NA	NA	-1946	NM_001326601	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.020000	0.497512	52(CAGTTTATATGG,-,0.00),54(GTTTATATGGAG,+,0.00)
mm_6036.1	chr1	59662340	59662540	-	1	NA	NA	NA	8394	NM_009460	22218	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0.000000	0.323383	
mm_163440.1	chr12	85476577	85476777	-	1	NA	NA	NA	2776	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.010000	0.487562	
mm_65485.1	chr7	25658644	25658844	-	1	NA	NA	NA	17	NM_007533	12039	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	0.050000	0.567164	
mm_118353.1	chr13	115052664	115052864	-	1	NA	NA	NA	37394	NM_134058	105083	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota homolog (Drosophila)	protein-coding	0.035000	0.482587	-96(TGCTTGAAAAGG,-,0.00),-64(TTCTTTAAAAAC,-,0.00)
mm_143295.1	chr17	65885193	65885393	-	1	NA	NA	NA	-370	NM_001198949	19765	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.040000	0.592040	
mm_166334.1	chr5	114378992	114379192	-	1	NA	NA	NA	1413	NM_001159941	330171	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	0.010000	0.577114	
mm_131286.1	chr16	11203312	11203512	+	1	NA	NA	NA	29	NR_038156	69918	Mm.440400	NR_038154		2610020C07Rik	-	RIKEN cDNA 2610020C07 gene	ncRNA	0.065000	0.567164	
mm_124603.1	chr15	3279026	3279226	+	1	NA	NA	NA	8149	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.015000	0.422886	
mm_3511.1	chr1	150107261	150107461	+	1	NA	NA	NA	7330	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.000000	0.283582	
mm_145931.1	chr18	67205298	67205498	+	1	NA	NA	NA	39	NM_024190	67064	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	0.130000	0.686567	
mm_119057.1	chr14	30715615	30715815	+	1	NA	NA	NA	100	NM_001166532	54650	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.155000	0.736318	
mm_43826.1	chr5	142970452	142970652	+	1	NA	NA	NA	10197	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.045000	0.572139	
mm_142144.1	chr17	35980146	35980346	-	1	NA	NA	NA	291	NM_008136	14670	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	0.105000	0.741294	
mm_97468.1	chr11	78290777	78290977	+	1	NA	NA	NA	36	NM_001287206	216976	Mm.477146	NM_001045522		BC030499	BC037104|Sgk494	cDNA sequence BC030499	protein-coding	0.020000	0.542289	
mm_99029.1	chr11	98942393	98942593	+	1	NA	NA	NA	2782	NM_001177303	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.020000	0.542289	
mm_21643.1	chr2	164333357	164333557	-	1	NA	NA	NA	692	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.040000	0.507463	
mm_161262.1	chr14	3049023	3049223	+	1	NA	NA	NA	-162	NM_001177715	100040671	Mm.360540	NM_001177714	ENSMUSG00000079410	Gm2897	ENSMUSG00000079410	predicted gene 2897	protein-coding	0.070000	0.691542	
mm_10508.1	chr2	16355993	16356193	+	1	NA	NA	NA	-211	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.060000	0.631841	
mm_98142.1	chr11	87581016	87581216	+	1	NA	NA	NA	55	NM_001284392	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding	0.015000	0.532338	
mm_19353.1	chr2	91063021	91063221	-	1	NA	NA	NA	7194	NM_026721	68427	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.035000	0.597015	
mm_53587.1	chr6	137735086	137735286	+	1	NA	NA	NA	104	NM_011499	20901	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0.130000	0.746269	
mm_131581.1	chr16	18428825	18429025	+	1	NA	NA	NA	-2209	NM_001111062	12846	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.015000	0.552239	
mm_12342.1	chr2	69723163	69723363	+	1	NA	NA	NA	175	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.110000	0.691542	
mm_89306.1	chr10	87916205	87916405	+	1	NA	NA	NA	-50366	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.010000	0.393035	
mm_139007.1	chr17	45570276	45570476	+	1	NA	NA	NA	2885	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.025000	0.457711	-82(GCTCTTATAGAA,+,0.00)
mm_45161.1	chr5	49524981	49525181	-	1	NA	NA	NA	-239422	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.030000	0.601990	
mm_126759.1	chr15	85832209	85832409	+	1	NA	NA	NA	5	NM_001033337	239570	Mm.151748	NM_001033337	ENSMUSG00000035944	Ttc38	9030019H09	tetratricopeptide repeat domain 38	protein-coding	0.065000	0.582090	
mm_35634.1	chr4	43515079	43515279	-	1	NA	NA	NA	8153	NM_139305	230099	Mm.283682	NM_139305	ENSMUSG00000028463	Car9	CAIX|Ca9|MN/CA9	carbonic anhydrase 9	protein-coding	0.015000	0.512438	
mm_10177.1	chr2	4560033	4560233	+	1	NA	NA	NA	379	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.035000	0.462687	-28(GCCTTGATAAGG,-,0.00)
mm_22595.1	chr3	13833341	13833541	+	1	NA	NA	NA	-112931	NM_001163329	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.020000	0.368159	
mm_71470.1	chr8	46534723	46534923	+	1	NA	NA	NA	-17246	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.015000	0.442786	-90(ACCCATAAAAGT,-,0.00)
mm_123116.1	chr14	56062210	56062410	-	1	NA	NA	NA	0	NM_010779	17227	Mm.439684	NM_010779	ENSMUSG00000061068	Mcpt4	MMCP-4|MMCP-4A|MMCP-4B|Mcp-4|Mcp4	mast cell protease 4	protein-coding	0.010000	0.527363	-35(AGCTATAAAAGC,-,0.00)
mm_11342.1	chr2	30803679	30803879	+	1	NA	NA	NA	-115	NR_028487	73598	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.010000	0.587065	61(TCTTTTAGACCC,+,0.00)
mm_110152.1	chr12	26453628	26453828	-	1	NA	NA	NA	2724	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.005000	0.437811	
mm_2041.1	chr1	87264329	87264529	+	1	NA	NA	NA	65	NM_028889	98363	Mm.247951	NM_028889	ENSMUSG00000026255	Efhd1	4931430I01Rik|AI452351|PP3051|mitocalcin	EF hand domain containing 1	protein-coding	0.100000	0.651741	
mm_154784.1	chrX	13070971	13071171	+	1	NA	NA	NA	-427	NM_009481	22284	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	0.050000	0.572139	
mm_57296.1	chr6	124450094	124450294	-	1	NA	NA	NA	12550	NM_001346656	232370	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.015000	0.517413	
mm_126246.1	chr15	79005383	79005583	+	1	NA	NA	NA	3260	NR_105921	102465577		NR_105921	ENSMUSG00000099180	Mir6956	Gm27880|mmu-mir-6956	microRNA 6956	ncRNA	0.020000	0.378109	65(CTTTTTAAAAAG,+,0.00),65(CTTTTTAAAAAG,-,0.00),67(TTTTAAAAAGGC,+,0.00)
mm_152790.1	chr19	21471044	21471244	-	1	NA	NA	NA	1517	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.020000	0.502488	
mm_22238.1	chr2	174441255	174441455	-	1	NA	NA	NA	-2316	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.015000	0.522388	
mm_59329.1	chr7	25392175	25392375	+	1	NA	NA	NA	-2163	NM_001039507	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.000000	0.482587	
mm_128189.1	chr15	34876236	34876436	-	1	NA	NA	NA	38287	NM_001271704	16539	Mm.71045	NM_181317	ENSMUSG00000050963	Kcns2	E130006J24Rik|Kv9.2	K+ voltage-gated channel, subfamily S, 2	protein-coding	0.000000	0.417910	
mm_135462.1	chr16	45784398	45784598	-	1	NA	NA	NA	-41543	NM_172511	213012	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	0.010000	0.268657	-99(CACTTTAAAGAC,-,0.00)
mm_66260.1	chr7	35654115	35654315	-	1	NA	NA	NA	-6733	NM_019746	56330	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0.030000	0.537313	
mm_171698.1	chr4	70467988	70468188	-	1	NA	NA	NA	-57653	NM_145990	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.020000	0.497512	
mm_99912.1	chr11	109936213	109936413	+	1	NA	NA	NA	59503	NM_013851	27404	Mm.341004	NM_013851	ENSMUSG00000020620	Abca8b	Abca8	ATP-binding cassette, sub-family A (ABC1), member 8b	protein-coding	0.040000	0.477612	
mm_115780.1	chr13	19311371	19311571	-	1	NA	NA	NA	84342	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.378109	
mm_74039.1	chr8	121947866	121948066	+	1	NA	NA	NA	-2526	NM_016812	53325	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	0.045000	0.606965	
mm_113153.1	chr13	24801078	24801278	+	1	NA	NA	NA	-479	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.115000	0.661692	
mm_17878.1	chr2	34958628	34958828	-	1	NA	NA	NA	3044	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.020000	0.557214	
mm_963.1	chr1	58029891	58030091	+	1	NA	NA	NA	22	NM_009676	11761	Mm.26787	NM_009676	ENSMUSG00000063558	Aox1	AI196512|AI255253|Ao|Aox-1|Aox-2|Aox2|Moro|Ro	aldehyde oxidase 1	protein-coding	0.035000	0.582090	
mm_136720.1	chr17	8165820	8166020	+	1	NA	NA	NA	402	NM_201230	75296	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0.055000	0.482587	
mm_132525.1	chr16	37829030	37829230	+	1	NA	NA	NA	-39270	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.010000	0.512438	
mm_13847.1	chr2	119584475	119584675	+	1	NA	NA	NA	-9721	NR_027832	66602	Mm.379181	NR_015473	ENSMUSG00000085438	1700020I14Rik	1190006L01Rik|4933437I03Rik|AI451541|AI585852|AW538376|AW558897|Cyrano	RIKEN cDNA 1700020I14 gene	ncRNA	0.025000	0.497512	
mm_88329.1	chr10	75571408	75571608	+	1	NA	NA	NA	-1987	NM_008116	14598	Mm.4559	NM_008116	ENSMUSG00000006345	Ggt1	CD224|GGT|GGT 1|GGT-1|Ggtp|dwg	gamma-glutamyltransferase 1	protein-coding	0.030000	0.606965	
mm_57802.1	chr6	129331706	129331906	-	1	NA	NA	NA	-25	NM_199034	381816	Mm.46114	NM_199034	ENSMUSG00000047720	4922502D21Rik	Clec2m|Gm1074|SPATA78	RIKEN cDNA 4922502D21 gene	protein-coding	0.030000	0.567164	
mm_5255.1	chr1	16655409	16655609	-	1	NA	NA	NA	1356	NM_026456	67923	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	0.010000	0.412935	
mm_145070.1	chr18	42053555	42053755	+	1	NA	NA	NA	-55	NM_172966	269016	Mm.45472	NM_172966	ENSMUSG00000057719	Sh3rf2	2310046K19|9130023G24Rik|AI452083|Ppp1r39|RNF158	SH3 domain containing ring finger 2	protein-coding	0.020000	0.522388	
mm_67032.1	chr7	66689460	66689660	-	1	NA	NA	NA	1	NM_080443	117589	Mm.34785	NM_080443	ENSMUSG00000030509	Asb7	AI449039|Asb-7|D030055C23Rik	ankyrin repeat and SOCS box-containing 7	protein-coding	0.050000	0.656716	
mm_114456.1	chr13	67128135	67128335	+	1	NA	NA	NA	7	NM_172392	268670	Mm.56274	NM_172392	ENSMUSG00000057396	Zfp759	BC028265|Rslcan-8|Rslcan8	zinc finger protein 759	protein-coding	0.030000	0.492537	
mm_60564.1	chr7	44481283	44481483	+	1	NA	NA	NA	-3134	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.452736	
mm_13254.1	chr2	98663932	98664132	+	1	NA	NA	NA	1196375	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.020000	0.363184	
mm_158864.1	chrY	2390406	2390606	+	1	NA	NA	NA	-208593	NM_001113395	100042840	Mm.472681	NM_001113395	ENSMUSG00000095573	H2al2b	ENSMUSG00000069034|Gm16501|H2al2y	H2A histone family member L2B	protein-coding	0.005000	0.447761	
mm_92613.1	chr10	80139066	80139266	-	1	NA	NA	NA	201	NR_036582	100503659	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.140000	0.746269	
mm_113404.1	chr13	33953137	33953337	+	1	NA	NA	NA	-11422	NM_001163239	18105	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	NAD(P)H dehydrogenase, quinone 2	protein-coding	0.010000	0.532338	
mm_129052.1	chr15	75566232	75566432	-	1	NA	NA	NA	316	NM_001135689	23934	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	0.040000	0.651741	13(GGCCAGAAAAGG,-,0.00)
mm_164515.1	chr16	96200618	96200818	+	1	NA	NA	NA	248	NM_015825	50795	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0.035000	0.537313	
mm_83893.1	chr9	56136045	56136245	-	1	NA	NA	NA	24925	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.000000	0.298507	-94(GTCCTTTTAAAG,-,0.00),-93(TCCTTTTAAAGA,-,0.00),-92(CCTTTTAAAGAA,+,0.00),54(GGCTTTATAGGA,-,0.00),86(CTGTTTTAAAGC,-,0.00)
mm_9422.1	chr1	172340938	172341138	-	1	NA	NA	NA	-172	NM_001039484	16513	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	0.065000	0.572139	
mm_100401.1	chr11	119392972	119393172	+	1	NA	NA	NA	2600	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.040000	0.532338	
mm_122478.1	chr14	45657942	45658142	-	1	NA	NA	NA	11	NR_039593	100628600		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	0.160000	0.756219	
mm_53267.1	chr6	128375388	128375588	+	1	NA	NA	NA	-22	NM_027697	71149	Mm.483176	NM_027697	ENSMUSG00000079304	4933413G19Rik	-	RIKEN cDNA 4933413G19 gene	protein-coding	0.015000	0.552239	
mm_84364.1	chr9	64803356	64803556	-	1	NA	NA	NA	-7555	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.005000	0.442786	
mm_41724.1	chr5	102481421	102481621	+	1	NA	NA	NA	130	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.040000	0.542289	
mm_48825.1	chr5	149051840	149052040	-	1	NA	NA	NA	-324	NM_001313894	15289	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.150000	0.746269	
mm_72935.1	chr8	91313489	91313689	+	1	NA	NA	NA	64	NM_011936	26383	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	0.085000	0.651741	
mm_127258.1	chr15	99704042	99704242	+	1	NA	NA	NA	1855	NM_031842	83797	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.030000	0.572139	
mm_100423.1	chr11	119442665	119442865	+	1	NA	NA	NA	-48582	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.015000	0.502488	-14(GCTTCTAAAAGG,-,0.00)
mm_78992.1	chr9	45403082	45403282	+	1	NA	NA	NA	44	NM_052823	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.005000	0.616915	
mm_133807.1	chr16	95701885	95702085	+	1	NA	NA	NA	-422	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.090000	0.641791	
mm_50652.1	chr6	51470311	51470511	+	1	NA	NA	NA	-205	NM_007624	12417	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	0.070000	0.646766	
mm_115304.1	chr13	112262950	112263150	+	1	NA	NA	NA	-25401	NM_001168403	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.015000	0.417910	-89(CCTTTTCTGGTG,+,0.00)
mm_26747.1	chr3	7613485	7613685	-	1	NA	NA	NA	175	NM_008371	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.020000	0.487562	
mm_83401.1	chr9	44735101	44735301	-	1	NA	NA	NA	-3	NM_153537	102693	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.055000	0.681592	
mm_130756.1	chr15	101270556	101270756	-	1	NA	NA	NA	3810	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.010000	0.611940	
mm_41589.1	chr5	93268168	93268368	+	1	NA	NA	NA	695	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0.055000	0.577114	
mm_132868.1	chr16	48611633	48611833	+	1	NA	NA	NA	160223	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.005000	0.447761	
mm_27496.1	chr3	54915903	54916103	-	1	NA	NA	NA	-116	NM_177854	329641	Mm.51187	NM_177854	ENSMUSG00000056306	Sertm1	6030405A18Rik	serine rich and transmembrane domain containing 1	protein-coding	0.065000	0.681592	
mm_164436.1	chr16	48874224	48874424	+	1	NA	NA	NA	1716	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.015000	0.487562	
mm_64663.1	chr7	4164712	4164912	-	1	NA	NA	NA	-113	NM_021454	58804	Mm.34268	NM_021454	ENSMUSG00000063838	Cdc42ep5	1700027J19Rik|2010007O02Rik|Borg3|C85526|CEP5	CDC42 effector protein (Rho GTPase binding) 5	protein-coding	0.025000	0.626866	
mm_141890.1	chr17	34861729	34861929	-	1	NA	NA	NA	685	NM_001142706	14962	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0.035000	0.572139	
mm_21774.1	chr2	164846554	164846754	-	1	NA	NA	NA	11054	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.020000	0.567164	
mm_102048.1	chr11	52000633	52000833	-	1	NA	NA	NA	-267	NM_009458	22210	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	2610301N02Rik|E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0.095000	0.676617	
mm_81614.1	chr9	110766597	110766797	+	1	NA	NA	NA	3016	NM_010859	17897	Mm.7353	NM_010859	ENSMUSG00000059741	Myl3	MLC1s|MLC1v|Mylc|VLC1	myosin, light polypeptide 3	protein-coding	0.035000	0.577114	
mm_60934.1	chr7	46861167	46861367	+	1	NA	NA	NA	4	NM_013580	16833	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	0.035000	0.547264	
mm_103230.1	chr11	70675489	70675689	-	1	NA	NA	NA	-6173	NM_001167669	216873	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0.035000	0.611940	
mm_123077.1	chr14	55722144	55722344	-	1	NA	NA	NA	-68	NM_019519	56187	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0.090000	0.691542	
mm_33140.1	chr4	125085055	125085255	+	1	NA	NA	NA	21	NM_001290701	70088	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	0.155000	0.756219	
mm_858.1	chr1	52132454	52132654	+	1	NA	NA	NA	12932	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.005000	0.417910	-21(TCCCTTTAAAGG,-,0.00),-20(CCCTTTAAAGGC,+,0.00),-20(CCCTTTAAAGGC,-,0.00),-19(CCTTTAAAGGCC,+,0.00)
mm_44712.1	chr5	30945324	30945524	-	1	NA	NA	NA	3	NM_001160149	68567	Mm.45127	NM_026770	ENSMUSG00000029161	Cgref1	1110004G24Rik|AW045201|Cgr11	cell growth regulator with EF hand domain 1	protein-coding	0.120000	0.751244	
mm_27143.1	chr3	32736660	32736860	-	1	NA	NA	NA	-5	NM_029017	74600	Mm.288960	NM_029017	ENSMUSG00000037531	Mrpl47	4833424P18Rik|CGI-204|ENSMUSG00000051761|Gm9859|L47mt|MRP-L47|MTF/L47|NCM1	mitochondrial ribosomal protein L47	protein-coding	0.045000	0.542289	
mm_118419.1	chr14	7817911	7818111	+	1	NA	NA	NA	54	NM_134080	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.090000	0.651741	
mm_9327.1	chr1	171845438	171845638	-	1	NA	NA	NA	5841	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.000000	0.462687	
mm_35281.1	chr4	20778620	20778820	-	1	NA	NA	NA	-52	NM_172987	269513	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding	0.025000	0.557214	65(TCCCCTAAAAGA,-,0.00)
mm_12841.1	chr2	82063787	82063987	+	1	NA	NA	NA	10229	NM_175513	241514	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding	0.005000	0.338308	
mm_172635.1	chr8	20579978	20580178	+	1	NA	NA	NA	-34849	NM_001270553	100861668	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.000000	0.398010	
mm_84533.1	chr9	67155155	67155355	-	1	NA	NA	NA	21694	NR_045748	100502636	Mm.412607	NR_045748	ENSMUSG00000111556	Gm19299	-	predicted gene, 19299	ncRNA	0.015000	0.447761	
mm_119236.1	chr14	33345524	33345724	+	1	NA	NA	NA	65400	NM_001310452	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.025000	0.442786	
mm_67736.1	chr7	90131033	90131233	-	1	NA	NA	NA	901	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.040000	0.467662	
mm_150116.1	chr19	29805181	29805381	+	1	NA	NA	NA	728	NM_172836	240613	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	ENSMUSG00000048936|Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	0.060000	0.626866	
mm_3831.1	chr1	159925959	159926159	+	1	NA	NA	NA	-118321	NR_028111	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.015000	0.437811	
mm_89855.1	chr10	107421135	107421335	+	1	NA	NA	NA	64899	NM_008656	17877	Mm.4984	NM_008656	ENSMUSG00000000435	Myf5	B130010J22Rik|Myf-5|bHLHc2	myogenic factor 5	protein-coding	0.005000	0.383085	
mm_37985.1	chr4	133622468	133622668	-	1	NA	NA	NA	10861	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.025000	0.492537	
mm_11999.1	chr2	57237590	57237790	+	1	NA	NA	NA	12	NM_001145820	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.040000	0.626866	
mm_162785.1	chr10	70599211	70599411	-	1	NA	NA	NA	-20	NM_178621	70911	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding	0.175000	0.796020	
mm_164493.1	chr16	90708750	90708950	+	1	NA	NA	NA	18521	NM_025642	66578	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0.005000	0.383085	
mm_2250.1	chr1	91062645	91062845	+	1	NA	NA	NA	9301	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.020000	0.577114	
mm_32136.1	chr4	99194666	99194866	+	1	NA	NA	NA	619	NM_001145967	242557	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.030000	0.417910	
mm_24021.1	chr3	87527134	87527334	+	1	NA	NA	NA	1656	NM_012051	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.020000	0.472637	
mm_59351.1	chr7	25659305	25659505	+	1	NA	NA	NA	252	NR_104358	27998	Mm.27853	NM_138586	ENSMUSG00000061286	Exosc5	D7Wsu180e	exosome component 5	protein-coding	0.055000	0.512438	
mm_115611.1	chr13	12008778	12008978	-	1	NA	NA	NA	98067	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.000000	0.268657	
mm_25782.1	chr3	126607014	126607214	+	1	NA	NA	NA	10163	NM_023813	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.015000	0.522388	
mm_37658.1	chr4	128962339	128962539	-	1	NA	NA	NA	16	NM_172875	242669	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.140000	0.786070	-35(GCTTATATAAGC,+,0.00),-35(GCTTATATAAGC,-,0.00)
mm_170046.1	chr17	24720041	24720241	+	1	NA	NA	NA	78	NM_008503	16898	Mm.157452	NM_008503	ENSMUSG00000044533	Rps2	Llrep3|S4	ribosomal protein S2	protein-coding	0.075000	0.577114	
mm_119532.1	chr14	47664147	47664347	+	1	NA	NA	NA	491	NM_001347522	16709	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	0.015000	0.457711	
mm_108890.1	chr12	100006986	100007186	+	1	NA	NA	NA	42587	NM_001164427	217826	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.015000	0.487562	
mm_155094.1	chrX	48256760	48256960	+	1	NA	NA	NA	-74	NM_028276	72554	Mm.336045	NM_028276	ENSMUSG00000063785	Utp14a	2700066J21Rik|JsdX|NY-CO-16|SDCCAG16|T25628|mKIAA0266	UTP14A small subunit processome component	protein-coding	0.080000	0.547264	
mm_146983.1	chr18	33891393	33891593	-	1	NA	NA	NA	96601	NR_038151	69749	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.045000	0.432836	
mm_63449.1	chr7	127511926	127512126	+	1	NA	NA	NA	43	NM_001304266	100043597	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	0.105000	0.656716	
mm_144194.1	chr18	7877464	7877664	+	1	NA	NA	NA	8367	NM_153085	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.005000	0.333333	
mm_69050.1	chr7	126861716	126861916	-	1	NA	NA	NA	-156	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	0.095000	0.592040	
mm_5218.1	chr1	13827436	13827636	-	1	NA	NA	NA	-40607	NR_004447	433273	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.015000	0.477612	19(GCTTATAGAGCT,+,0.00)
mm_130161.1	chr15	91548608	91548808	-	1	NA	NA	NA	24553	NM_001033633	239606	Mm.360596	NM_001033633	ENSMUSG00000036298	Slc2a13	6530403A04|A630029G22Rik|AI505012|Gm308	solute carrier family 2 (facilitated glucose transporter), member 13	protein-coding	0.020000	0.412935	
mm_14789.1	chr2	145860576	145860776	+	1	NA	NA	NA	-42565	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.075000	0.671642	
mm_78195.1	chr9	21367773	21367973	+	1	NA	NA	NA	2	NM_001042709	16201	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.110000	0.731343	
mm_9131.1	chr1	170788574	170788774	-	1	NA	NA	NA	79097	NM_001081304	226641	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.005000	0.432836	-9(TCTTTTAGGGTG,+,0.00)
mm_153281.1	chr19	37207943	37208143	-	1	NA	NA	NA	498	NM_001164336	69104	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	0.065000	0.641791	
mm_74036.1	chr8	121906606	121906806	+	1	NA	NA	NA	980	NM_011404	20539	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	0.030000	0.467662	
mm_73703.1	chr8	111686565	111686765	+	1	NA	NA	NA	3009	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.025000	0.582090	
mm_64761.1	chr7	4866080	4866280	-	1	NA	NA	NA	-1	NM_026158	67441	Mm.41385	NM_026158	ENSMUSG00000052605	Isoc2b	0610042E07Rik|AI553388|Isoc2	isochorismatase domain containing 2b	protein-coding	0.070000	0.567164	
mm_108717.1	chr12	87157521	87157721	+	1	NA	NA	NA	-2136	NR_136901	625237	Mm.390529	NR_136901		Gm6566	EG625237	predicted gene 6566	ncRNA	0.015000	0.552239	
mm_60269.1	chr7	43841898	43842098	+	1	NA	NA	NA	-271	NM_026806	68668	Mm.458122	NM_026806	ENSMUSG00000074155	Klk5	1110030O19Rik	kallikrein related-peptidase 5	protein-coding	0.010000	0.601990	
mm_85728.1	chr9	108340041	108340241	-	1	NA	NA	NA	1061	NM_001329528	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.050000	0.557214	
mm_69402.1	chr7	132317078	132317278	-	1	NA	NA	NA	-23	NM_029935	77590	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.090000	0.646766	
mm_74411.1	chr8	3624563	3624763	-	1	NA	NA	NA	386	NM_001129804	18545	Mm.440882	NM_008790	ENSMUSG00000004630	Pcp2	L7|Pcp-2	Purkinje cell protein 2 (L7)	protein-coding	0.010000	0.567164	
mm_47285.1	chr5	122130314	122130514	-	1	NA	NA	NA	4479	NM_001289811	330188	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0.010000	0.567164	
mm_167684.1	chr9	83254437	83254637	-	1	NA	NA	NA	-107930	NM_026122	94353	Mm.244426	NM_026122	ENSMUSG00000066456	Hmgn3	1110002A15Rik|6330514M13Rik|BB071015|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding	0.020000	0.512438	
mm_109251.1	chr12	109456911	109457111	+	1	NA	NA	NA	3556	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.020000	0.472637	
mm_21432.1	chr2	158361388	158361588	-	1	NA	NA	NA	21	NR_015463	68108	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	0.060000	0.577114	
mm_155712.1	chrX	96095999	96096199	+	1	NA	NA	NA	54	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.085000	0.626866	
mm_143424.1	chr17	70846198	70846398	-	1	NA	NA	NA	479	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.010000	0.537313	
mm_79672.1	chr9	59679737	59679937	+	1	NA	NA	NA	23469	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.005000	0.502488	
mm_16427.1	chr2	180385508	180385708	+	1	NA	NA	NA	4	NR_045331	622283	Mm.447602	NR_045331		Mir1a-1hg	EG622283|Gm6307	Mir1a-1 and Mir133a-2 host gene	ncRNA	0.055000	0.646766	-36(GGGTATATAAGA,-,0.00)
mm_64727.1	chr7	4674445	4674645	-	1	NA	NA	NA	10418	NM_024172	66245	Mm.6803	NM_024172	ENSMUSG00000063802	Hspbp1	1500019G21Rik	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	protein-coding	0.035000	0.532338	
mm_121392.1	chr14	119108372	119108572	+	1	NA	NA	NA	-9038	NM_001081252	66435	Mm.213406	NM_025561	ENSMUSG00000042104	Uggt2	1810064L21Rik|3110001A05Rik|3110027P15Rik|A230065J02Rik|AW047562|Ugcgl2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding	0.010000	0.328358	19(CTTTTTAAAGTG,+,0.00)
mm_11874.1	chr2	49308861	49309061	+	1	NA	NA	NA	63061	NM_001290656	109241	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630|OTTMUSG00000012483	methyl-CpG binding domain protein 5	protein-coding	0.045000	0.547264	
mm_49002.1	chr6	4756766	4756966	+	1	NA	NA	NA	9560	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.025000	0.502488	
mm_25402.1	chr3	107278725	107278925	+	1	NA	NA	NA	-33	NM_026774	68576	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	0.015000	0.462687	
mm_70862.1	chr8	24503000	24503200	+	1	NA	NA	NA	-18114	NR_035483	100316707		NR_035483	ENSMUSG00000088552	Mir1957a	Mir1957|mmu-mir-1957|mmu-mir-1957a	microRNA 1957a	ncRNA	0.030000	0.527363	
mm_24135.1	chr3	88227336	88227536	+	1	NA	NA	NA	11838	NR_029817	387133		NR_029817	ENSMUSG00000106493	Mir9-1	Mirn9|Mirn9-1|mir-9-1|mmu-mir-9-1	microRNA 9-1	ncRNA	0.010000	0.432836	
mm_142236.1	chr17	37481096	37481296	-	1	NA	NA	NA	2333	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.005000	0.452736	
mm_169390.1	chr14	43271619	43271819	+	1	NA	NA	NA	76092	NM_027940	71826	Mm.335855	NM_027940	ENSMUSG00000095384	1700001F09Rik	Gm10377	RIKEN cDNA 1700001F09 gene	protein-coding	0.000000	0.457711	
mm_142716.1	chr17	47924568	47924768	-	1	NA	NA	NA	-36	NM_001110825	74123	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.135000	0.771144	
mm_18857.1	chr2	75679322	75679522	-	1	NA	NA	NA	20132	NR_033513	627828	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	0.015000	0.422886	
mm_116942.1	chr13	56096082	56096282	-	1	NA	NA	NA	39368	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.060000	0.611940	
mm_154553.1	chrM	15260	15460	-	1	NA	NA	NA	NA	NA									0.005000	0.343284	
mm_104028.1	chr11	86201499	86201699	-	1	NA	NA	NA	239	NR_130958	74038	Mm.171304	NR_130958	ENSMUSG00000085208	Brip1os	4632419I22Rik	BRCA1 interacting protein C-terminal helicase 1, opposite strand	ncRNA	0.085000	0.577114	
mm_92656.1	chr10	80406715	80406915	-	1	NA	NA	NA	6	NM_025650	66594	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0.085000	0.597015	
mm_134757.1	chr16	23225209	23225409	-	1	NA	NA	NA	569	NM_145933	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.065000	0.711443	
mm_125111.1	chr15	27968279	27968479	+	1	NA	NA	NA	57469	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.015000	0.517413	
mm_96522.1	chr11	68496474	68496674	+	1	NA	NA	NA	-6445	NM_001004435	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.005000	0.522388	
mm_154167.1	chr19	58675059	58675259	-	1	NA	NA	NA	4794	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.000000	0.497512	
mm_31200.1	chr4	43669572	43669772	+	1	NA	NA	NA	701	NM_001085508	242409	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	0.060000	0.671642	
mm_60705.1	chr7	45220354	45220554	+	1	NA	NA	NA	4701	NM_001285498	21677	Mm.3019	NM_011565	ENSMUSG00000030796	Tead2	ETF|Etdf|TEAD-2|TEF-4|TEF4	TEA domain family member 2	protein-coding	0.015000	0.552239	
mm_46533.1	chr5	105699146	105699346	-	1	NA	NA	NA	-723	NM_001122768	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.025000	0.398010	
mm_159666.1	chr4	152377049	152377249	+	1	NA	NA	NA	38498	NM_001081376	269610	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding	0.050000	0.611940	
mm_48952.1	chr6	4540510	4540710	+	1	NA	NA	NA	34992	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.020000	0.412935	
mm_132042.1	chr16	27439726	27439926	+	1	NA	NA	NA	50870	NM_001289436	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.020000	0.407960	
mm_34212.1	chr4	140961310	140961510	+	1	NA	NA	NA	139	NM_023374	67680	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.110000	0.706468	
mm_22787.1	chr3	22078668	22078868	+	1	NA	NA	NA	2116	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.000000	0.407960	
mm_26315.1	chr3	142520018	142520218	+	1	NA	NA	NA	-10218	NM_001083312	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.000000	0.358209	
mm_79666.1	chr9	59661386	59661586	+	1	NA	NA	NA	5118	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.010000	0.537313	
mm_129807.1	chr15	82987750	82987950	-	1	NA	NA	NA	-28554	NR_037241	100526477		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	0.070000	0.587065	
mm_49218.1	chr6	15779013	15779213	+	1	NA	NA	NA	58452	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.000000	0.318408	
mm_86899.1	chr10	22306614	22306814	+	1	NA	NA	NA	-6	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.015000	0.542289	
mm_75216.1	chr8	39605556	39605756	-	1	NA	NA	NA	37022	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.412935	
mm_133334.1	chr16	78694929	78695129	+	1	NA	NA	NA	-118341	NM_025967	67102	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.010000	0.417910	
mm_143518.1	chr17	73108554	73108754	-	1	NA	NA	NA	669	NM_001177967	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.020000	0.492537	
mm_60560.1	chr7	44481214	44481414	+	1	NA	NA	NA	-3203	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.467662	
mm_85424.1	chr9	103489263	103489463	-	1	NA	NA	NA	-9035	NM_001002896	107993	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding	0.010000	0.557214	
mm_38283.1	chr4	136890153	136890353	-	1	NA	NA	NA	2661	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.035000	0.577114	
mm_70399.1	chr8	11312420	11312620	+	1	NA	NA	NA	-285	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.100000	0.731343	
mm_148578.1	chr19	4962248	4962448	+	1	NA	NA	NA	42	NM_025553	66419	Mm.28494	NM_025553	ENSMUSG00000024902	Mrpl11	2410001P07Rik|L11mt	mitochondrial ribosomal protein L11	protein-coding	0.065000	0.552239	
mm_124817.1	chr15	9071197	9071397	+	1	NA	NA	NA	37	NM_001040395	68646	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.090000	0.711443	
mm_117699.1	chr13	94358812	94359012	-	1	NA	NA	NA	11	NR_045619	328309	Mm.174191	NM_183205		Gm9776	A530089L17|ENSMUSG00000042857	predicted gene 9776	ncRNA	0.130000	0.731343	
mm_170928.1	chr2	40127822	40128022	-	1	NA	NA	NA	-901584	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding	0.025000	0.477612	
mm_72481.1	chr8	83652533	83652733	+	1	NA	NA	NA	-45	NM_018771	67903	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	0.150000	0.751244	
mm_124183.1	chr14	93890604	93890804	-	1	NA	NA	NA	-25	NM_001346722	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.045000	0.582090	
mm_170285.1	chr18	28188791	28188991	-	1	NA	NA	NA	-371273	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.015000	0.402985	
mm_12760.1	chr2	79255625	79255825	+	1	NA	NA	NA	299	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.075000	0.621891	
mm_42261.1	chr5	114103255	114103455	+	1	NA	NA	NA	3022	NM_001033202	100756	Mm.240421	NM_001033202	ENSMUSG00000029592	Usp30	6330590F17Rik|AI851327|D5Ertd483e	ubiquitin specific peptidase 30	protein-coding	0.050000	0.562189	
mm_157684.1	chrX	60147576	60147776	-	1	NA	NA	NA	24	NM_133197	109904	Mm.93796	NM_133197	ENSMUSG00000031139	Mcf2	B230117G22Rik|Dbl|Mcf-2	mcf.2 transforming sequence	protein-coding	0.025000	0.437811	
mm_90045.1	chr10	115832941	115833141	+	1	NA	NA	NA	15757	NM_001168679	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	0.010000	0.412935	
mm_105767.1	chr11	109611284	109611484	-	1	NA	NA	NA	5	NM_145940	52639	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0.110000	0.731343	
mm_59512.1	chr7	27581142	27581342	+	1	NA	NA	NA	-10310	NM_001110208	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.020000	0.587065	
mm_82069.1	chr9	122875418	122875618	+	1	NA	NA	NA	-9512	NM_173364	235682	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	0.010000	0.457711	-31(CCATAAATAGTC,+,0.00)
mm_118631.1	chr14	21272622	21272822	+	1	NA	NA	NA	196570	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.005000	0.388060	-69(ATTTTTATAGTC,+,0.00)
mm_109300.1	chr12	109560196	109560396	+	1	NA	NA	NA	-3396	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.010000	0.467662	4(GCCCATTAATAG,-,0.00),6(CCATTAATAGCA,+,0.00)
mm_73617.1	chr8	110126321	110126521	+	1	NA	NA	NA	41785	NM_007586	12308	Mm.2755	NM_007586	ENSMUSG00000003657	Calb2	CR	calbindin 2	protein-coding	0.025000	0.547264	
mm_22609.1	chr3	14530542	14530742	+	1	NA	NA	NA	-3146	NM_001163579	71710	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	0.010000	0.497512	
mm_95178.1	chr11	41499038	41499238	+	1	NA	NA	NA	501576	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding	0.015000	0.482587	
mm_80809.1	chr9	96392215	96392415	+	1	NA	NA	NA	-28016	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.000000	0.407960	
mm_103717.1	chr11	79527583	79527783	-	1	NA	NA	NA	2926	NM_146023	101488212	Mm.439665	NM_146023	ENSMUSG00000070354	Gm21975	Evi2a-evi2b	predicted gene 21975	protein-coding	0.020000	0.502488	
mm_113475.1	chr13	36729973	36730173	+	1	NA	NA	NA	4404	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.040000	0.606965	
mm_171593.1	chr4	147651743	147651943	-	1	NA	NA	NA	-9335	NM_145078	112422	Mm.327194	NM_145078	ENSMUSG00000066000	Zfp979	2610305D13Rik|Ssm1b	zinc finger protein 979	protein-coding	0.040000	0.512438	-31(GTGTATATAAGC,-,0.00)
mm_25502.1	chr3	109509066	109509266	+	1	NA	NA	NA	-64841	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.000000	0.313433	
mm_93135.1	chr10	92162634	92162834	-	1	NA	NA	NA	2444	NR_028262	110333	Mm.429764	NR_028262		Rmst	100041799|AI853140|C230053E11Rik|D930049J19Rik|Dmt2|Gm3515|M2|Ncrms	rhabdomyosarcoma 2 associated transcript (non-coding RNA)	ncRNA	0.065000	0.542289	
mm_98322.1	chr11	90255050	90255250	+	1	NA	NA	NA	5674	NM_026178	67468	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.005000	0.422886	
mm_146422.1	chr18	84721044	84721244	+	1	NA	NA	NA	902	NM_173770	240479	Mm.472378	NM_173770	ENSMUSG00000047992	Fam69c	B230399E16Rik	family with sequence similarity 69, member C	protein-coding	0.020000	0.378109	57(ACCTCTAAAAAG,-,0.00)
mm_23948.1	chr3	84829688	84829888	+	1	NA	NA	NA	14211	NM_001177773	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.000000	0.343284	
mm_9215.1	chr1	171231128	171231328	-	1	NA	NA	NA	3121	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.020000	0.577114	
mm_159236.1	chr2	144823613	144823813	+	1	NA	NA	NA	47	NM_025490	66328	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	0.005000	0.522388	
mm_94647.1	chr11	16951294	16951494	+	1	NA	NA	NA	-16	NM_176982	319701	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.070000	0.606965	
mm_157518.1	chrX	49797785	49797985	-	1	NA	NA	NA	-140	NM_177591	209268	Mm.110505	NM_177591	ENSMUSG00000031111	Igsf1	5330413N23|5530402E03|AI747649|InhBP/p120|mKIAA0364	immunoglobulin superfamily, member 1	protein-coding	0.040000	0.661692	
mm_55997.1	chr6	86397024	86397224	-	1	NA	NA	NA	26	NM_025823	66881	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	0.080000	0.686567	
mm_118501.1	chr14	13588740	13588940	+	1	NA	NA	NA	-82036	NM_177624	218739	Mm.39919	NM_177624	ENSMUSG00000044772	Sntn	A430083B19Rik	sentan, cilia apical structure protein	protein-coding	0.000000	0.368159	
mm_13009.1	chr2	90917161	90917361	+	1	NA	NA	NA	789	NM_025576	66461	Mm.23926	NM_025576		Ptpmt1	1110001D10Rik|2810004N20Rik|PLIP	protein tyrosine phosphatase, mitochondrial 1	protein-coding	0.025000	0.527363	
mm_156508.1	chrX	150147398	150147598	+	1	NA	NA	NA	165866	NM_001101501	333588	Mm.159296	NM_001101501		Gm15104	OTTMUSG00000018998	predicted gene 15104	protein-coding	0.010000	0.512438	-33(CCCCTTATAAGC,-,0.00),-31(CCTTATAAGCAC,+,0.00)
mm_49754.1	chr6	34751476	34751676	+	1	NA	NA	NA	-28856	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.000000	0.263682	
mm_156261.1	chrX	136822749	136822949	+	1	NA	NA	NA	103	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.462687	
mm_116871.1	chr13	55018454	55018654	-	1	NA	NA	NA	2265	NM_001206390	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.010000	0.502488	
mm_113671.1	chr13	42728742	42728942	+	1	NA	NA	NA	19261	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.015000	0.383085	
mm_119095.1	chr14	30895306	30895506	+	1	NA	NA	NA	8930	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.040000	0.592040	
mm_68122.1	chr7	102120083	102120283	-	1	NA	NA	NA	-3470	NM_001081424	504186	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	0.005000	0.383085	
mm_89926.1	chr10	111232071	111232271	+	1	NA	NA	NA	-66508	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.005000	0.373134	
mm_38090.1	chr4	134227274	134227474	-	1	NA	NA	NA	9	NM_001130030	329954	Mm.79072	NM_177866	ENSMUSG00000048003	Catsper4	4933412L05	cation channel, sperm associated 4	protein-coding	0.015000	0.537313	
mm_137429.1	chr17	26270296	26270496	+	1	NA	NA	NA	17486	NR_037905	66978	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	0.025000	0.363184	
mm_13642.1	chr2	114049466	114049666	+	1	NA	NA	NA	3309	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.025000	0.507463	
mm_171473.1	chr4	145781458	145781658	+	1	NA	NA	NA	15	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.025000	0.502488	
mm_43979.1	chr5	146261146	146261346	+	1	NA	NA	NA	29571	NM_153599	264064	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.095000	0.567164	
mm_122062.1	chr14	30378315	30378515	-	1	NA	NA	NA	-24929	NM_001083616	12289	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.000000	0.189055	
mm_154786.1	chrX	13071179	13071379	+	1	NA	NA	NA	-219	NM_009481	22284	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	0.050000	0.626866	
mm_78355.1	chr9	25504317	25504517	+	1	NA	NA	NA	22820	NM_026189	67484	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.020000	0.447761	
mm_95787.1	chr11	54956132	54956332	+	1	NA	NA	NA	6708	NM_021327	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.085000	0.651741	
mm_59296.1	chr7	25088260	25088460	+	1	NA	NA	NA	8815	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.010000	0.199005	41(ACGTATAAAAAG,-,0.00)
mm_59087.1	chr7	19696229	19696429	+	1	NA	NA	NA	2069	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.005000	0.527363	
mm_159742.1	chr5	71658208	71658408	-	1	NA	NA	NA	0	NM_010251	14397	Mm.248731	NM_010251	ENSMUSG00000029211	Gabra4	Gabra-4	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	protein-coding	0.035000	0.557214	
mm_25299.1	chr3	105959397	105959597	+	1	NA	NA	NA	-1	NM_027432	70465	Mm.5110	NM_027432	ENSMUSG00000000561	Wdr77	2610003I18Rik|2610312E17Rik|C79984|p44/MEP50	WD repeat domain 77	protein-coding	0.090000	0.597015	
mm_129083.1	chr15	75894402	75894602	-	1	NA	NA	NA	-21	NM_172607	223646	Mm.288368	NM_172607	ENSMUSG00000022574	Naprt	9130210N20Rik|Naprt1	nicotinate phosphoribosyltransferase	protein-coding	0.030000	0.542289	-21(CCTTTTAAGTTG,+,0.00)
mm_160902.1	chr11	75910979	75911179	-	1	NA	NA	NA	-20	NM_029548	380714	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	0.020000	0.527363	
mm_127482.1	chr15	101274505	101274705	+	1	NA	NA	NA	7759	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.020000	0.472637	
mm_51640.1	chr6	86004253	86004453	+	1	NA	NA	NA	-12838	NM_012013	26910	Mm.8024	NM_012013	ENSMUSG00000030001	Figla	FIGalpha|bHLHc8	folliculogenesis specific basic helix-loop-helix	protein-coding	0.035000	0.507463	
mm_120771.1	chr14	73552696	73552896	+	1	NA	NA	NA	10	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	0.135000	0.721393	
mm_117414.1	chr13	74220696	74220896	-	1	NA	NA	NA	-12096	NM_177333	211446	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0.000000	0.427861	44(TCTTTAAAACAC,+,0.00)
mm_118318.1	chr13	113567770	113567970	-	1	NA	NA	NA	50694	NM_130796	170625	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.005000	0.497512	29(GGTTTTAAAAAG,-,0.00)
mm_149139.1	chr19	9003660	9003860	+	1	NA	NA	NA	-14144	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.000000	0.437811	65(ACACTTAAAAGG,-,0.00)
mm_119527.1	chr14	47648313	47648513	+	1	NA	NA	NA	-898	NM_001347527	16709	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	0.025000	0.452736	
mm_73268.1	chr8	104534967	104535167	+	1	NA	NA	NA	367	NM_001301164	12354	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	0.035000	0.522388	
mm_99959.1	chr11	113649440	113649640	+	1	NA	NA	NA	11	NM_013581	16834	Mm.261620	NM_013581	ENSMUSG00000018661	Cog1	6030445I15|Ldlb|mKIAA1381	component of oligomeric golgi complex 1	protein-coding	0.115000	0.716418	
mm_4817.1	chr1	185431823	185432023	+	1	NA	NA	NA	9896	NR_038006	319562	Mm.184335	NM_176943	ENSMUSG00000051295	9630028B13Rik	-	RIKEN cDNA 9630028B13 gene	ncRNA	0.025000	0.442786	-63(CCCTTTAAACTG,+,0.00),-33(GCCTATAAAAGA,-,0.00)
mm_27127.1	chr3	32341055	32341255	-	1	NA	NA	NA	-24334	NR_027966	67576	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	0.025000	0.398010	
mm_41876.1	chr5	104662242	104662442	+	1	NA	NA	NA	90670	NM_001346671	69623	Mm.69919	NM_027142		Zfp33b	2310012P17Rik	zinc finger protein 33B	protein-coding	0.025000	0.512438	
mm_113380.1	chr13	33016054	33016254	+	1	NA	NA	NA	-11260	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	0.000000	0.432836	
mm_160404.1	chr8	71487791	71487991	+	1	NA	NA	NA	-212	NM_032544	70359	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	0.085000	0.641791	
mm_6203.1	chr1	66764986	66765186	-	1	NA	NA	NA	52509	NM_177645	68691	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.010000	0.407960	
mm_51853.1	chr6	90462475	90462675	+	1	NA	NA	NA	-51	NM_023184	66277	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.195000	0.815920	
mm_2047.1	chr1	87336511	87336711	+	1	NA	NA	NA	9613	NM_001110212	227331	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	0.005000	0.402985	
mm_15625.1	chr2	162661212	162661412	+	1	NA	NA	NA	149	NR_033569	77288	Mm.376571	NR_033569		9430021M05Rik	-	RIKEN cDNA 9430021M05 gene	ncRNA	0.125000	0.721393	
mm_40710.1	chr5	65863685	65863885	+	1	NA	NA	NA	216	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.020000	0.497512	
mm_72866.1	chr8	88650441	88650641	+	1	NA	NA	NA	3194	NM_145857	257632	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0.000000	0.487562	
mm_63376.1	chr7	127212522	127212722	+	1	NA	NA	NA	1014	NM_016754	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.035000	0.567164	
mm_139631.1	chr17	57367366	57367566	+	1	NA	NA	NA	8780	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.253731	-85(CTCTTTTAAAAG,-,0.00),-83(CTTTTAAAAGTA,+,0.00)
mm_136195.1	chr16	89508220	89508420	-	1	NA	NA	NA	3	NM_027771	71363	Mm.158680	NM_027771	ENSMUSG00000056706	Krtap7-1	5430433J05Rik	keratin associated protein 7-1	protein-coding	0.010000	0.467662	-36(AGGTATAAAAAG,-,0.00)
mm_28056.1	chr3	84191179	84191379	-	1	NA	NA	NA	16641	NR_036654	624713	Mm.442604	NR_036654		Gm6525	EG624713	ribosomal protein L36a pseudogene	pseudo	0.040000	0.616915	
mm_100906.1	chr11	6213794	6213994	-	1	NA	NA	NA	-13443	NM_173748	209586	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	0.005000	0.427861	
mm_166014.1	chr4	120570209	120570409	-	1	NA	NA	NA	-33	NM_016748	51797	Mm.1815	NM_016748	ENSMUSG00000028633	Ctps	Ctps1	cytidine 5'-triphosphate synthase	protein-coding	0.105000	0.726368	
mm_40047.1	chr5	33983404	33983604	+	1	NA	NA	NA	71	NM_001310546	381633	Mm.4923	NM_001033458	ENSMUSG00000070858	Gm1673	-	predicted gene 1673	protein-coding	0.145000	0.721393	
mm_69018.1	chr7	126746771	126746971	-	1	NA	NA	NA	-12755	NM_011952	26417	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.030000	0.527363	
mm_114721.1	chr13	83687106	83687306	+	1	NA	NA	NA	-40900	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.030000	0.462687	
mm_140100.1	chr17	78375693	78375893	+	1	NA	NA	NA	42359	NM_001285949	225020	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.000000	0.383085	
mm_105134.1	chr11	101425529	101425729	-	1	NA	NA	NA	-296	NM_026865	73635	Mm.472804	NM_026865	ENSMUSG00000097487	Ptges3l	1110069E20Rik|1700113I22Rik	prostaglandin E synthase 3 (cytosolic)-like	protein-coding	0.080000	0.641791	
mm_138348.1	chr17	34931821	34932021	+	1	NA	NA	NA	668	NM_010893	18010	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0.045000	0.592040	
mm_172529.1	chr7	86118577	86118777	+	1	NA	NA	NA	53047	NM_001102578	546981	Mm.469835	NM_001102578	ENSMUSG00000090436	Vmn2r75	EG546981	vomeronasal 2, receptor 75	protein-coding	0.030000	0.512438	
mm_127462.1	chr15	101272158	101272358	+	1	NA	NA	NA	5412	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.035000	0.582090	-92(CAGCCTAAAAGG,-,0.00),-90(GCCTAAAAGGGC,+,0.00)
mm_18036.1	chr2	38797074	38797274	-	1	NA	NA	NA	-12659	NM_001159549	14536	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	0.000000	0.343284	
mm_59151.1	chr7	24369989	24370189	+	1	NA	NA	NA	-174	NM_001163510	16534	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0.025000	0.557214	
mm_91916.1	chr10	60299089	60299289	-	1	NA	NA	NA	14728	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.010000	0.522388	
mm_106348.1	chr11	118393377	118393577	-	1	NA	NA	NA	8454	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.020000	0.512438	
mm_98156.1	chr11	87617137	87617337	+	1	NA	NA	NA	73	NM_001045527	327992	Mm.390371	NM_001045527	ENSMUSG00000070345	Hsf5	Gm739|MLZ-220	heat shock transcription factor family member 5	protein-coding	0.110000	0.756219	
mm_69173.1	chr7	127215589	127215789	-	1	NA	NA	NA	2756	NM_017461	54204	Mm.18	NM_017461	ENSMUSG00000000486	Sept1	Diff6|Pnutl3	septin 1	protein-coding	0.045000	0.552239	
mm_162753.1	chr10	60162314	60162514	-	1	NA	NA	NA	35638	NR_105871	102465546		NR_105871	ENSMUSG00000105468	Mir6906	mmu-mir-6906	microRNA 6906	ncRNA	0.015000	0.482587	3(CTCTTTATATGC,-,0.00),5(CTTTATATGCTC,+,0.00)
mm_13480.1	chr2	106080828	106081028	+	1	NA	NA	NA	-77379	NR_033993	99349	Mm.25661	NM_026992	ENSMUSG00000027166	Dnajc24	1700030A21Rik|2610027M02Rik|AV066965|AW240712|Dph4|MmDjC7|Zcsl3	DnaJ heat shock protein family (Hsp40) member C24	protein-coding	0.025000	0.467662	
mm_105438.1	chr11	104367146	104367346	-	1	NA	NA	NA	75045	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.000000	0.338308	-45(TCCTTTAAAAAA,-,0.00)
mm_111566.1	chr12	101718422	101718622	-	1	NA	NA	NA	1	NM_001082976	74413	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	0.090000	0.721393	
mm_27895.1	chr3	79287235	79287435	-	1	NA	NA	NA	-58041	NM_001142953	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.115000	0.746269	
mm_169268.1	chr1	38577232	38577432	-	1	NA	NA	NA	49912	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.010000	0.592040	
mm_164726.1	chr17	57235908	57236108	-	1	NA	NA	NA	-7872	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.020000	0.592040	
mm_32200.1	chr4	101446700	101446900	+	1	NA	NA	NA	27097	NM_009647	11639	Mm.42040	NM_009647	ENSMUSG00000028527	Ak4	AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e	adenylate kinase 4	protein-coding	0.040000	0.457711	-33(CTGCATAAAAAG,-,0.00)
mm_105234.1	chr11	102317673	102317873	-	1	NA	NA	NA	-486	NM_001044383	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.135000	0.791045	
mm_17096.1	chr2	23067937	23068137	-	1	NA	NA	NA	-164	NM_028793	74159	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.045000	0.482587	
mm_170487.1	chr19	17926659	17926859	+	1	NA	NA	NA	-89127	NM_001190483	18552	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding	0.045000	0.502488	
mm_45733.1	chr5	86373321	86373521	-	1	NA	NA	NA	-34	NM_145561	231382	Mm.240139	NM_145561	ENSMUSG00000061259	Tmprss11d	AST|AsP|BC020151	transmembrane protease, serine 11d	protein-coding	0.005000	0.412935	
mm_67002.1	chr7	65156433	65156633	-	1	NA	NA	NA	-5	NM_183087	70638	Mm.441986	NM_183087	ENSMUSG00000030518	Fam189a1	5730507A09Rik|AW047451	family with sequence similarity 189, member A1	protein-coding	0.225000	0.870647	
mm_157987.1	chrX	94212591	94212791	-	1	NA	NA	NA	-40	NM_012010	26905	Mm.218851	NM_012010	ENSMUSG00000035150	Eif2s3x	AA409828|AA547477|AI314668|Eif-2gx	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	protein-coding	0.065000	0.606965	
mm_6511.1	chr1	74337733	74337933	-	1	NA	NA	NA	5223	NM_019999	56695	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0.025000	0.542289	23(TCTTTTATAGGA,+,0.00)
mm_77104.1	chr8	111061670	111061870	-	1	NA	NA	NA	5431	NM_028274	72544	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	0.030000	0.587065	
mm_53821.1	chr6	147111855	147112055	+	1	NA	NA	NA	20880	NM_001081237	232539	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	0.005000	0.323383	-4(TCTTTTAAAGTT,+,0.00),13(CTTTTTATAATC,+,0.00)
mm_107285.1	chr12	29799964	29800164	+	1	NA	NA	NA	-113619	NR_046080	328075	Mm.447832	NR_046080		C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	0.000000	0.447761	
mm_111209.1	chr12	84399519	84399719	-	1	NA	NA	NA	1315	NM_001286058	12499	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0.015000	0.507463	
mm_164103.1	chr15	23196538	23196738	+	1	NA	NA	NA	160175	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding	0.010000	0.343284	-59(GGCTAGAAAAGC,-,0.00),69(GACTTTATAAGG,-,0.00),71(CTTTATAAGGAA,+,0.00)
mm_146263.1	chr18	77832874	77833074	+	1	NA	NA	NA	38424	NM_013831	19201	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.005000	0.432836	
mm_160113.1	chr7	26173310	26173510	+	1	NA	NA	NA	1	NM_010000	13094	Mm.14413	NM_010000	ENSMUSG00000040660	Cyp2b9	Cyp2b	cytochrome P450, family 2, subfamily b, polypeptide 9	protein-coding	0.005000	0.512438	
mm_121422.1	chr14	120275606	120275806	+	1	NA	NA	NA	37	NM_175341	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding	0.045000	0.567164	
mm_8140.1	chr1	136260824	136261024	-	1	NA	NA	NA	-51	NM_001101516	383563	Mm.40367	NM_001101516	ENSMUSG00000052759	Gpr25	Gm1300	G protein-coupled receptor 25	protein-coding	0.045000	0.671642	
mm_66390.1	chr7	44235990	44236190	-	1	NA	NA	NA	32	NR_029436	70004	Mm.158317	NR_029436	ENSMUSG00000038782	1700028J19Rik	-	RIKEN cDNA 1700028J19 gene	ncRNA	0.015000	0.582090	
mm_49888.1	chr6	38843344	38843544	+	1	NA	NA	NA	-6133	NM_001136065	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.005000	0.452736	
mm_111897.1	chr12	108688413	108688613	-	1	NA	NA	NA	13793	NM_001171002	70059	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	0.040000	0.572139	
mm_104530.1	chr11	96280468	96280668	-	1	NA	NA	NA	-1337	NM_010461	15416	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	0.015000	0.333333	
mm_112044.1	chr12	111671464	111671664	-	1	NA	NA	NA	774	NM_021273	12709	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.090000	0.626866	-80(GCCTTAAGAGCC,+,0.00)
mm_19313.1	chr2	90548301	90548501	-	1	NA	NA	NA	32246	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.005000	0.422886	
mm_52770.1	chr6	121185364	121185564	+	1	NA	NA	NA	1797	NM_001304773	74043	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	0.025000	0.527363	46(GCCTCTAAGAGG,-,0.00)
mm_95942.1	chr11	58384578	58384778	+	1	NA	NA	NA	4032	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.025000	0.522388	
mm_86082.1	chr9	114781892	114782092	-	1	NA	NA	NA	1	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.070000	0.686567	
mm_43442.1	chr5	136099518	136099718	+	1	NA	NA	NA	-5904	NR_106002	102465626		NR_106002	ENSMUSG00000099003	Mir7035	Gm27661|mmu-mir-7035	microRNA 7035	ncRNA	0.000000	0.398010	
mm_84221.1	chr9	61925359	61925559	-	1	NA	NA	NA	-10949	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.015000	0.462687	
mm_139418.1	chr17	53479173	53479373	+	1	NA	NA	NA	39	NM_025887	271457	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0.115000	0.666667	
mm_152940.1	chr19	28763439	28763639	-	1	NA	NA	NA	-71627	NM_009199	20510	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	0.055000	0.517413	
mm_50327.1	chr6	48395723	48395923	+	1	NA	NA	NA	237	NM_001347153	77827	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	0.120000	0.696517	
mm_157712.1	chrX	66778717	66778917	-	1	NA	NA	NA	-1485	NR_030535	100124496		NR_030535	ENSMUSG00000094184	Mir743b	Mirn743b|mir-743b	microRNA 743b	ncRNA	0.010000	0.383085	
mm_36173.1	chr4	62085919	62086119	-	1	NA	NA	NA	1293	NM_001039544	17842	Mm.250267	NM_010845	ENSMUSG00000066154	Mup3	MUP15|MUPIII|Mup-3|Mup25	major urinary protein 3	protein-coding	0.010000	0.318408	-43(CCTTATATAAAA,+,0.00),65(GTATATAAAAAG,-,0.00)
mm_162776.1	chr10	69275088	69275288	-	1	NA	NA	NA	61994	NM_001252638	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.015000	0.378109	-47(ACCTTTAAAAGG,-,0.00),-46(CCTTTAAAAGGT,+,0.00)
mm_55223.1	chr6	52233089	52233289	-	1	NA	NA	NA	1750	NM_008263	15395	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0.020000	0.592040	
mm_60693.1	chr7	45174968	45175168	+	1	NA	NA	NA	1765	NR_106022	102465638		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0.050000	0.656716	
mm_63241.1	chr7	126585441	126585641	+	1	NA	NA	NA	276	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.005000	0.562189	
mm_23465.1	chr3	60473013	60473213	+	1	NA	NA	NA	283	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.010000	0.412935	
mm_51555.1	chr6	83341487	83341687	+	1	NA	NA	NA	-7897	NM_175277	78653	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0.010000	0.492537	89(GGCTTTATAAAA,-,0.00)
mm_92159.1	chr10	67539067	67539267	-	1	NA	NA	NA	1237	NM_001347458	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.040000	0.601990	
mm_57712.1	chr6	128707673	128707873	-	1	NA	NA	NA	15273	NM_001099918	100043861	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	0.010000	0.447761	
mm_101347.1	chr11	23633558	23633758	-	1	NA	NA	NA	-27	NM_027860	71675	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	0.155000	0.756219	
mm_164186.1	chr15	77740660	77740860	+	1	NA	NA	NA	11639	NM_001168660	71898	Mm.422856	NM_173743	ENSMUSG00000068246	Apol9b	2310016F22Rik	apolipoprotein L 9b	protein-coding	0.020000	0.522388	
mm_127359.1	chr15	100674325	100674525	+	1	NA	NA	NA	-4925	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.005000	0.447761	-43(CTGTATTTAAGG,-,0.00)
mm_164848.1	chr18	45268858	45269058	+	1	NA	NA	NA	98	NM_001312905	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.075000	0.651741	
mm_22271.1	chr2	178506019	178506219	-	1	NA	NA	NA	75604	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.020000	0.557214	
mm_22178.1	chr2	173215725	173215925	-	1	NA	NA	NA	3097	NM_021394	58203	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.015000	0.527363	
mm_76821.1	chr8	104609252	104609452	-	1	NA	NA	NA	15044	NM_007663	12556	Mm.19423	NM_007663	ENSMUSG00000031881	Cdh16	-	cadherin 16	protein-coding	0.015000	0.592040	
mm_60518.1	chr7	44479811	44480011	+	1	NA	NA	NA	-4606	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.522388	
mm_117752.1	chr13	95912499	95912699	-	1	NA	NA	NA	-20677	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.010000	0.512438	
mm_129213.1	chr15	76522336	76522536	-	1	NA	NA	NA	-307	NM_130893	170729	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.095000	0.766169	
mm_140935.1	chr17	24415429	24415629	-	1	NA	NA	NA	854	NM_001080128	19826	Mm.1951	NM_009070	ENSMUSG00000034681	Rnps1	-	ribonucleic acid binding protein S1	protein-coding	0.030000	0.487562	
mm_26743.1	chr3	6802585	6802785	-	1	NA	NA	NA	-182242	NM_027048	69347	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	0.010000	0.452736	
mm_140075.1	chr17	75178555	75178755	+	1	NA	NA	NA	-126	NM_001331236	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.025000	0.512438	
mm_126262.1	chr15	79108847	79109047	+	1	NA	NA	NA	-36	NM_177461	27008	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	0.155000	0.840796	
mm_24406.1	chr3	90363062	90363262	+	1	NA	NA	NA	21508	NM_139304	229542	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	0.000000	0.328358	
mm_111798.1	chr12	104929963	104930163	-	1	NA	NA	NA	-64987	NR_104435	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.015000	0.452736	
mm_127430.1	chr15	101270022	101270222	+	1	NA	NA	NA	3276	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.035000	0.597015	
mm_44576.1	chr5	24842362	24842562	-	1	NA	NA	NA	-101	NM_053075	19744	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.155000	0.696517	-88(CCCTTTAAAGTA,+,0.00)
mm_130951.1	chr15	103255279	103255479	-	1	NA	NA	NA	60	NM_008685	18022	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.080000	0.686567	
mm_43493.1	chr5	136962005	136962205	+	1	NA	NA	NA	28	NM_025562	66437	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	0.055000	0.646766	
mm_74321.1	chr8	126848923	126849123	+	1	NA	NA	NA	96898	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.020000	0.522388	
mm_89623.1	chr10	96186125	96186325	+	1	NA	NA	NA	-39982	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.000000	0.477612	
mm_150794.1	chr19	44303280	44303480	+	1	NA	NA	NA	209	NR_039574	100628619		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.040000	0.457711	
mm_59577.1	chr7	28120428	28120628	+	1	NA	NA	NA	-8938	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.015000	0.522388	
mm_92118.1	chr10	63338027	63338227	-	1	NA	NA	NA	908	NM_019812	93759	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0.025000	0.348259	
mm_110749.1	chr12	69982643	69982843	-	1	NA	NA	NA	4259	NM_022028	64010	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0.010000	0.452736	-33(AGGCATAAAAAG,-,0.00)
mm_138286.1	chr17	34612596	34612796	+	1	NA	NA	NA	3275	NM_152922	81701	Mm.231343	NM_152922	ENSMUSG00000015467	Egfl8	Ng3	EGF-like domain 8	protein-coding	0.025000	0.567164	
mm_22391.1	chr2	181202450	181202650	-	1	NA	NA	NA	239	NM_009184	20459	Mm.4497	NM_009184	ENSMUSG00000038751	Ptk6	BRK|Sik|Tksk|tks	PTK6 protein tyrosine kinase 6	protein-coding	0.000000	0.537313	
mm_147731.1	chr18	61035660	61035860	-	1	NA	NA	NA	439	NM_009880	12590	Mm.144448	NM_009880	ENSMUSG00000024619	Cdx1	Cdx|Cdx-1	caudal type homeobox 1	protein-coding	0.125000	0.756219	
mm_173057.1	chrX	125624773	125624973	+	1	NA	NA	NA	1209131	NM_177705	237029	Mm.60998	NM_177705	ENSMUSG00000058670	4932411N23Rik	-	RIKEN cDNA 4932411N23 gene	protein-coding	0.035000	0.522388	
mm_157142.1	chrX	9459379	9459579	-	1	NA	NA	NA	9845	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.467662	
mm_115075.1	chr13	101692389	101692589	+	1	NA	NA	NA	141	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.035000	0.537313	71(CACCATTTAAGG,-,0.00),73(CCATTTAAGGTG,+,0.00)
mm_139101.1	chr17	47141043	47141243	+	1	NA	NA	NA	201	NM_001097623	224829	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.060000	0.621891	
mm_153830.1	chr19	46317972	46318172	-	1	NA	NA	NA	8794	NM_001347454	73728	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.180000	0.835821	
mm_39557.1	chr5	22746024	22746224	+	1	NA	NA	NA	-69	NM_001081231	269629	Mm.371712	NM_029990	ENSMUSG00000106379	Lhfpl3	A930031L14Rik	lipoma HMGIC fusion partner-like 3	protein-coding	0.115000	0.731343	
mm_154154.1	chr19	58455371	58455571	-	1	NA	NA	NA	-73	NM_010279	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.035000	0.527363	
mm_1762.1	chr1	75546382	75546582	+	1	NA	NA	NA	216	NM_009208	20536	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	0.135000	0.766169	
mm_112530.1	chr13	9281502	9281702	+	1	NA	NA	NA	5077	NM_001081426	208440	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.005000	0.298507	
mm_88292.1	chr10	75241066	75241266	+	1	NA	NA	NA	28776	NM_001145826	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.025000	0.507463	-45(TGGTATTAAAGC,-,0.00)
mm_10648.1	chr2	20662042	20662242	+	1	NA	NA	NA	142629	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.030000	0.467662	
mm_76746.1	chr8	95332115	95332315	-	1	NA	NA	NA	-69	NM_133954	101985	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	0.090000	0.701493	
mm_152917.1	chr19	28009678	28009878	-	1	NA	NA	NA	1388	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.010000	0.343284	
mm_28291.1	chr3	89091450	89091650	-	1	NA	NA	NA	-1519	NM_001083808	72296	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.060000	0.592040	
mm_163784.1	chr13	120300197	120300397	+	1	NA	NA	NA	-95	NM_001037925	625360	Mm.327506	NM_001037925	ENSMUSG00000094796	BC147527	-	cDNA sequence BC147527	protein-coding	0.000000	0.457711	
mm_6305.1	chr1	71414825	71415025	-	1	NA	NA	NA	-15	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding	0.020000	0.452736	
mm_153112.1	chr19	32980171	32980371	-	1	NA	NA	NA	222694	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.010000	0.512438	
mm_4662.1	chr1	180365680	180365880	+	1	NA	NA	NA	-35231	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.040000	0.407960	
mm_47046.1	chr5	116024383	116024583	-	1	NA	NA	NA	-55	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.085000	0.636816	
mm_108446.1	chr12	82451062	82451262	+	1	NA	NA	NA	139813	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.005000	0.512438	
mm_36984.1	chr4	109665596	109665796	-	1	NA	NA	NA	-324	NM_007671	12580	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	protein-coding	0.060000	0.577114	
mm_101573.1	chr11	34311648	34311848	-	1	NA	NA	NA	-3074	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.005000	0.363184	29(TAGTTTAAAAGC,-,0.00)
mm_78973.1	chr9	45369911	45370111	+	1	NA	NA	NA	-174	NM_022004	59095	Mm.208287	NM_022004	ENSMUSG00000066705	Fxyd6	0610030I18Rik|Php	FXYD domain-containing ion transport regulator 6	protein-coding	0.020000	0.492537	
mm_116909.1	chr13	55482694	55482894	-	1	NA	NA	NA	-5018	NR_105909	102465569		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0.020000	0.557214	
mm_12287.1	chr2	69022828	69023028	+	1	NA	NA	NA	-112872	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.010000	0.393035	
mm_23491.1	chr3	60502175	60502375	+	1	NA	NA	NA	1096	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.010000	0.427861	-34(ATGTATAAATGG,-,0.00)
mm_133997.1	chr16	4719056	4719256	-	1	NA	NA	NA	200	NM_001290763	67824	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	0.035000	0.572139	
mm_68548.1	chr7	114254596	114254796	-	1	NA	NA	NA	-16	NM_033370	70349	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	0.090000	0.686567	
mm_61241.1	chr7	65644825	65645025	+	1	NA	NA	NA	27	NM_172310	272396	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0.075000	0.706468	
mm_40723.1	chr5	65967293	65967493	+	1	NA	NA	NA	269	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.020000	0.542289	
mm_45965.1	chr5	90465861	90466061	-	1	NA	NA	NA	5091	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.398010	-93(TGCCTTATAAAG,-,0.00),-91(CCTTATAAAGGC,+,0.00),-91(CCTTATAAAGGC,-,0.00),-8(TGCTTTAAAAGC,-,0.00),-7(GCTTTAAAAGCT,+,0.00)
mm_136607.1	chr17	5278359	5278559	+	1	NA	NA	NA	140308	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.015000	0.512438	
mm_73638.1	chr8	110737841	110738041	+	1	NA	NA	NA	12215	NM_001310591	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.030000	0.562189	
mm_85750.1	chr9	108597481	108597681	-	1	NA	NA	NA	19	NM_028944	74443	Mm.226534	NM_028944	ENSMUSG00000006675	P4htm	4933406E20Rik|AI853847|BB128974|Ph-4	prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	protein-coding	0.135000	0.736318	
mm_151281.1	chr19	55253887	55254087	+	1	NA	NA	NA	618	NM_027976	433256	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.030000	0.631841	
mm_117041.1	chr13	58291638	58291838	-	1	NA	NA	NA	-17550	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.020000	0.437811	
mm_67759.1	chr7	92669980	92670180	-	1	NA	NA	NA	-168	NM_029078	74737	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	0.105000	0.616915	
mm_72806.1	chr8	87472792	87472992	+	1	NA	NA	NA	80	NR_033430	100040294	Mm.213632	NR_033430	ENSMUSG00000097248	Gm2694	C230036H16Rik|linc1582	predicted gene 2694	ncRNA	0.145000	0.746269	
mm_135252.1	chr16	37621843	37622043	-	1	NA	NA	NA	32425	NM_026610	68194	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.020000	0.482587	
mm_38365.1	chr4	138326170	138326370	-	1	NA	NA	NA	26	NM_026880	68943	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	0.115000	0.721393	
mm_63810.1	chr7	133709255	133709455	+	1	NA	NA	NA	22	NM_025392	66165	Mm.389983	NM_025392	ENSMUSG00000030983	Bccip	1110013J05Rik|TOK-1	BRCA2 and CDKN1A interacting protein	protein-coding	0.095000	0.636816	
mm_99260.1	chr11	101245920	101246120	+	1	NA	NA	NA	-314	NM_019444	54409	Mm.260698	NM_019444	ENSMUSG00000001240	Ramp2	-	receptor (calcitonin) activity modifying protein 2	protein-coding	0.045000	0.641791	
mm_46797.1	chr5	112896319	112896519	-	1	NA	NA	NA	-57	NM_028901	74376	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	0.020000	0.621891	
mm_36326.1	chr4	70410247	70410447	-	1	NA	NA	NA	88	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.120000	0.681592	
mm_158593.1	chrX	150986000	150986200	-	1	NA	NA	NA	31193	NM_001168600	237107	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	0.020000	0.507463	
mm_124822.1	chr15	9071587	9071787	+	1	NA	NA	NA	427	NM_001040395	68646	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.140000	0.746269	
mm_12173.1	chr2	62664227	62664427	+	1	NA	NA	NA	0	NM_145523	227960	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0.110000	0.681592	
mm_135209.1	chr16	36611065	36611265	-	1	NA	NA	NA	-49031	NM_013803	12374	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.020000	0.432836	48(GGCTAGAAATGG,-,0.00)
mm_8224.1	chr1	138174193	138174393	-	1	NA	NA	NA	833	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.452736	-66(GCCTTGAAAAGG,-,0.00)
mm_98849.1	chr11	97660385	97660585	+	1	NA	NA	NA	-2927	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.115000	0.696517	
mm_116513.1	chr13	45670513	45670713	-	1	NA	NA	NA	163169	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.000000	0.432836	
mm_25734.1	chr3	122856333	122856533	+	1	NA	NA	NA	-38639	NM_007980	14079	Mm.28398	NM_007980	ENSMUSG00000023057	Fabp2	Fabpi|I-FABP	fatty acid binding protein 2, intestinal	protein-coding	0.015000	0.343284	
mm_35190.1	chr4	16013721	16013921	-	1	NA	NA	NA	56	NM_145950	209212	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.160000	0.791045	
mm_39355.1	chr5	9100998	9101198	+	1	NA	NA	NA	361	NM_001081029	652925	Mm.439954	NM_001081029	ENSMUSG00000079659	Tmem243	4930420K17Rik|E030031F02Rik	transmembrane protein 243, mitochondrial	protein-coding	0.135000	0.751244	
mm_46603.1	chr5	107868934	107869134	-	1	NA	NA	NA	6073	NM_007964	14020	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0.135000	0.736318	-49(GGCTCTTTAAGG,-,0.00),-47(CTCTTTAAGGCC,+,0.00)
mm_94485.1	chr11	6635505	6635705	+	1	NA	NA	NA	3044	NM_011709	22373	Mm.268094	NM_011709	ENSMUSG00000000381	Wap	-	whey acidic protein	protein-coding	0.010000	0.562189	
mm_116476.1	chr13	43559732	43559932	-	1	NA	NA	NA	359	NM_001081059	76137	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0.155000	0.776119	
mm_1729.1	chr1	75381557	75381757	+	1	NA	NA	NA	-457	NM_001085371	11790	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0.055000	0.621891	
mm_8818.1	chr1	162028612	162028812	-	1	NA	NA	NA	23743	NR_040562	72753	Mm.452125	NR_040562	ENSMUSG00000090260	2810442N19Rik	-	RIKEN cDNA 2810442N19 gene	ncRNA	0.000000	0.313433	
mm_86746.1	chr10	19486609	19486809	+	1	NA	NA	NA	-105240	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.005000	0.432836	55(CACTAGAAAAGC,-,0.00)
mm_53930.1	chr6	4746293	4746493	-	1	NA	NA	NA	811	NM_001130188	20392	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	0.050000	0.457711	-7(TTTTTTAAAGCA,+,0.00)
mm_82484.1	chr9	18385925	18386125	-	1	NA	NA	NA	-97	NM_028279	72560	Mm.474510	NM_028279	ENSMUSG00000043943	Naalad2	2700022G20Rik|D9Ertd285e|Folh1b|GCP3|GCPIII|NAADALASE2|NAALADASE2	N-acetylated alpha-linked acidic dipeptidase 2	protein-coding	0.010000	0.512438	
mm_107961.1	chr12	72668269	72668469	+	1	NA	NA	NA	-3541	NM_025522	66375	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.015000	0.447761	
mm_37926.1	chr4	132853310	132853510	-	1	NA	NA	NA	-10241	NM_146154	100336	Mm.105230	NM_146154	ENSMUSG00000028882	Ppp1r8	6330548N22Rik|AU044684|NIPP1	protein phosphatase 1, regulatory (inhibitor) subunit 8	protein-coding	0.005000	0.442786	
mm_137803.1	chr17	29846453	29846653	+	1	NA	NA	NA	41329	NM_001081160	74762	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0.055000	0.552239	-42(GTTTTTAAACCA,+,0.00)
mm_113120.1	chr13	24514843	24515043	+	1	NA	NA	NA	-67246	NM_001286100	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.000000	0.462687	
mm_78269.1	chr9	22002915	22003115	+	1	NA	NA	NA	27	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.070000	0.557214	
mm_113080.1	chr13	23836844	23837044	+	1	NA	NA	NA	-2490	NM_001164743	105355	Mm.27038	NM_134069	ENSMUSG00000036083	Slc17a3	AW261723|Npt4	solute carrier family 17 (sodium phosphate), member 3	protein-coding	0.010000	0.447761	
mm_78804.1	chr9	44047878	44048078	+	1	NA	NA	NA	4594	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.010000	0.552239	
mm_5243.1	chr1	16345380	16345580	-	1	NA	NA	NA	173635	NM_001347044	29819	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen (RNA binding protein) homolog 2 (Drosophila)	protein-coding	0.000000	0.422886	
mm_121479.1	chr14	121035457	121035657	+	1	NA	NA	NA	-17	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.100000	0.781095	
mm_102120.1	chr11	53300595	53300795	-	1	NA	NA	NA	-216	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.075000	0.636816	
mm_80641.1	chr9	89317023	89317223	+	1	NA	NA	NA	105933	NM_026829	107885	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.010000	0.363184	
mm_141919.1	chr17	35000290	35000490	-	1	NA	NA	NA	356	NM_033075	110956	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0.060000	0.532338	3(CCCTATAAGAAG,-,0.00)
mm_147517.1	chr18	52518999	52519199	-	1	NA	NA	NA	10622	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.010000	0.323383	
mm_138129.1	chr17	34187504	34187704	+	1	NA	NA	NA	48	NM_013683	21354	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.035000	0.552239	
mm_149758.1	chr19	22800396	22800596	+	1	NA	NA	NA	49891	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.010000	0.442786	
mm_37016.1	chr4	113286880	113287080	-	1	NA	NA	NA	-7	NM_001103199	230622	Mm.291107	NM_001103199	ENSMUSG00000087194	Skint6	OTTMUSG00000008519	selection and upkeep of intraepithelial T cells 6	protein-coding	0.005000	0.402985	
mm_83219.1	chr9	42124205	42124405	-	1	NA	NA	NA	-16	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.165000	0.786070	
mm_75121.1	chr8	34806956	34807156	-	1	NA	NA	NA	-554	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.100000	0.651741	
mm_9880.1	chr1	185451539	185451739	-	1	NA	NA	NA	-3209	NM_001033286	226781	Mm.227117	NM_001033286	ENSMUSG00000026614	Slc30a10	E130106K10Rik|Gm212	solute carrier family 30, member 10	protein-coding	0.005000	0.497512	
mm_155149.1	chrX	52791118	52791318	+	1	NA	NA	NA	18	NM_001034059	434778	Mm.23411	NM_001034059	ENSMUSG00000073207	Ccdc160	6330534C20Rik	coiled-coil domain containing 160	protein-coding	0.070000	0.666667	-84(CCCTTTAAATCC,+,0.00)
mm_143582.1	chr17	74323792	74323992	-	1	NA	NA	NA	52	NM_024428	66310	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0.005000	0.343284	9(CCCTTTCTAGTC,+,0.00)
mm_45973.1	chr5	90469520	90469720	-	1	NA	NA	NA	8750	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.030000	0.477612	-68(CCTTATAGAAAG,+,0.00)
mm_76128.1	chr8	80880105	80880305	-	1	NA	NA	NA	274	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.115000	0.731343	
mm_11849.1	chr2	45239197	45239397	+	1	NA	NA	NA	-126018	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.015000	0.497512	
mm_82996.1	chr9	36693017	36693217	-	1	NA	NA	NA	72	NR_040741	75567	Mm.426883	NR_040741	ENSMUSG00000098304	1700027I24Rik	-	RIKEN cDNA 1700027I24 gene	ncRNA	0.000000	0.412935	
mm_161901.1	chr18	56562493	56562693	+	1	NA	NA	NA	24	NM_001162989	56698	Mm.214569	NM_019996	ENSMUSG00000008301	Phax	2810055C14Rik|4933427L19Rik|AU018701|AU018854|D18Ertd65e|Rnuxa|p55	phosphorylated adaptor for RNA export	protein-coding	0.065000	0.626866	
mm_165479.1	chr2	164333297	164333497	-	1	NA	NA	NA	632	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.045000	0.497512	
mm_90960.1	chr10	13304637	13304837	-	1	NA	NA	NA	19423	NM_001195096	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.035000	0.592040	
mm_103621.1	chr11	78694119	78694319	-	1	NA	NA	NA	3206	NM_008702	18099	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0.010000	0.333333	
mm_14191.1	chr2	127083290	127083490	+	1	NA	NA	NA	12733	NM_026678	109778	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0.010000	0.417910	
mm_156845.1	chrX	164391581	164391781	+	1	NA	NA	NA	18159	NM_010216	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.025000	0.497512	
mm_98285.1	chr11	89065737	89065937	+	1	NA	NA	NA	5086	NR_110336	414094	Mm.124287	NM_001001497		Dgkeos	A930013B10Rik	diacylglycerol kinase, epsilon, opposite strand	ncRNA	0.010000	0.457711	
mm_154369.1	chrM	9360	9560	+	1	NA	NA	NA	NA	NA									0.010000	0.323383	
mm_74222.1	chr8	124047054	124047254	+	1	NA	NA	NA	23681	NM_001029876	382038	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	0.025000	0.507463	
mm_107037.1	chr12	13559079	13559279	+	1	NA	NA	NA	68467	NR_136761	102639399	Mm.122052	NR_136761		Gm35725	-	predicted gene, 35725	ncRNA	0.005000	0.452736	
mm_77137.1	chr8	111393745	111393945	-	1	NA	NA	NA	-24	NM_178086	338521	Mm.41083	NM_178086	ENSMUSG00000033579	Fa2h	FAAH|Faxdc1|G630055L08Rik	fatty acid 2-hydroxylase	protein-coding	0.105000	0.736318	
mm_45203.1	chr5	52669368	52669568	-	1	NA	NA	NA	233	NM_172490	211006	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	0.115000	0.711443	
mm_121899.1	chr14	21848747	21848947	-	1	NA	NA	NA	63	NM_026965	69156	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0.080000	0.686567	
mm_169.1	chr1	13177044	13177244	+	1	NA	NA	NA	-49981	NM_001081209	383491	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0.025000	0.432836	
mm_173256.1	chrX	94775599	94775799	-	1	NA	NA	NA	22590	NR_003292	668171	Mm.426134	NR_003292		Zxda	4933406P09Rik|AW413531	zinc finger, X-linked, duplicated A	pseudo	0.035000	0.517413	-22(GGTTTTAAAAAG,-,0.00)
mm_137226.1	chr17	24273899	24274099	+	1	NA	NA	NA	-22590	NM_007634	12449	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	0.000000	0.447761	
mm_122714.1	chr14	52257641	52257841	-	1	NA	NA	NA	-20169	NM_201637	67772	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	0.090000	0.681592	
mm_27091.1	chr3	30048144	30048344	-	1	NA	NA	NA	-35040	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.005000	0.432836	
mm_149357.1	chr19	10948317	10948517	+	1	NA	NA	NA	849	NM_023731	108673	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0.035000	0.572139	
mm_120519.1	chr14	66784401	66784601	+	1	NA	NA	NA	84099	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.015000	0.467662	
mm_23232.1	chr3	50439033	50439233	+	1	NA	NA	NA	4480	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.467662	
mm_107889.1	chr12	70455608	70455808	+	1	NA	NA	NA	2554	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0.015000	0.328358	-61(GTGTATTTAAGA,-,0.00)
mm_148935.1	chr19	7018721	7018921	+	1	NA	NA	NA	648	NM_153795	108101	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.030000	0.582090	
mm_64880.1	chr7	14492929	14493129	-	1	NA	NA	NA	-103	NM_001184981	638251	Mm.482063	NM_001184981	ENSMUSG00000094156	Sult2a7	EG638251|Gm7231	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 7	protein-coding	0.010000	0.388060	
mm_74833.1	chr8	23208238	23208438	-	1	NA	NA	NA	115	NM_018743	102247	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	0.135000	0.746269	
mm_153592.1	chr19	43674777	43674977	-	1	NA	NA	NA	4	NM_145156	246696	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	2210403D18Rik|Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	0.120000	0.731343	
mm_30612.1	chr4	6990652	6990852	+	1	NA	NA	NA	-29	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.095000	0.616915	
mm_60750.1	chr7	45486167	45486367	+	1	NA	NA	NA	4	NM_001290999	56734	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0.015000	0.497512	
mm_21342.1	chr2	157109367	157109567	-	1	NA	NA	NA	22412	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.020000	0.422886	
mm_36507.1	chr4	83485824	83486024	-	1	NA	NA	NA	524	NM_001290527	101739	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	0.105000	0.756219	
mm_150527.1	chr19	39113809	39114009	+	1	NA	NA	NA	11	NM_001011707	69888	Mm.271190	NM_001011707	ENSMUSG00000067229	Cyp2c66	2010301M18Rik	cytochrome P450, family 2, subfamily c, polypeptide 66	protein-coding	0.000000	0.407960	-31(CCTTATATAAGC,+,0.00),-31(CCTTATATAAGC,-,0.00)
mm_68257.1	chr7	105591592	105591792	-	1	NA	NA	NA	8424	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.000000	0.457711	
mm_170297.1	chr18	31803966	31804166	+	1	NA	NA	NA	9	NM_001170966	74320	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	0.100000	0.621891	
mm_59778.1	chr7	28837459	28837659	+	1	NA	NA	NA	3389	NM_010707	16857	Mm.210336	NM_010707		Lgals6	galectin-6	lectin, galactose binding, soluble 6	protein-coding	0.035000	0.492537	
mm_46186.1	chr5	97456889	97457089	-	1	NA	NA	NA	19	NM_010294	14626	Mm.61206	NM_010294	ENSMUSG00000050553	Gk2	GKTA|Gk-rs2	glycerol kinase 2	protein-coding	0.045000	0.577114	
mm_82218.1	chr9	3016816	3017016	-	1	NA	NA	NA	21827	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.020000	0.343284	
mm_72098.1	chr8	71592028	71592228	+	1	NA	NA	NA	-56	NM_025396	66171	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	0.115000	0.701493	
mm_23499.1	chr3	60525764	60525964	+	1	NA	NA	NA	24685	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.000000	0.343284	
mm_166136.1	chr4	155992843	155993043	+	1	NA	NA	NA	38	NM_001302467	20318	Mm.293517	NM_011341	ENSMUSG00000029076	Sdf4	Cab45	stromal cell derived factor 4	protein-coding	0.155000	0.726368	
mm_29355.1	chr3	108474956	108475156	-	1	NA	NA	NA	-29797	NM_001204979	20226	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0.020000	0.497512	
mm_3295.1	chr1	136683566	136683766	+	1	NA	NA	NA	37	NR_045325	100503460	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.020000	0.587065	
mm_132063.1	chr16	30008600	30008800	+	1	NA	NA	NA	33	NR_033631	100043102	Mm.30797	NR_033631	ENSMUSG00000097184	4632428C04Rik	Gm4231	RIKEN cDNA 4632428C04 gene	ncRNA	0.025000	0.631841	
mm_97894.1	chr11	83305438	83305638	+	1	NA	NA	NA	2841	NM_001035854	71770	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979	adaptor-related protein complex 2, beta 1 subunit	protein-coding	0.000000	0.378109	
mm_141492.1	chr17	31296558	31296758	-	1	NA	NA	NA	434	NM_001242427	224674	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.075000	0.691542	
mm_90990.1	chr10	13965547	13965747	-	1	NA	NA	NA	-732	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.105000	0.681592	
mm_102769.1	chr11	68199130	68199330	-	1	NA	NA	NA	-21662	NR_105833	102465219		NR_105833	ENSMUSG00000099174	Mir6406	Gm27981|mmu-mir-6406	microRNA 6406	ncRNA	0.025000	0.492537	
mm_7450.1	chr1	120258794	120258994	-	1	NA	NA	NA	6386	NM_133186	68428	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.030000	0.587065	
mm_95193.1	chr11	43012076	43012276	+	1	NA	NA	NA	-137701	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding	0.005000	0.512438	
mm_33643.1	chr4	133011432	133011632	+	1	NA	NA	NA	26	NM_146155	230793	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.125000	0.726368	
mm_58569.1	chr7	4793008	4793208	+	1	NA	NA	NA	143	NM_009081	19943	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	0.075000	0.651741	
mm_160726.1	chr10	75212270	75212470	+	1	NA	NA	NA	-20	NM_001145826	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.110000	0.791045	
mm_97507.1	chr11	78498939	78499139	+	1	NA	NA	NA	-81	NM_011707	22370	Mm.3667	NM_011707	ENSMUSG00000017344	Vtn	AI256434|Vn	vitronectin	protein-coding	0.025000	0.517413	-57(CTTTATAAAAAG,-,0.00)
mm_147681.1	chr18	60691647	60691847	-	1	NA	NA	NA	21642	NM_008306	15531	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.005000	0.601990	
mm_139316.1	chr17	48409076	48409276	+	1	NA	NA	NA	644	NM_001110832	18044	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	0.120000	0.746269	
mm_14096.1	chr2	125218043	125218243	+	1	NA	NA	NA	-29105	NM_001159646	110074	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0.015000	0.363184	
mm_32586.1	chr4	111410998	111411198	+	1	NA	NA	NA	-3908	NR_033793	67621	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0.010000	0.517413	
mm_60037.1	chr7	31036898	31037098	+	1	NA	NA	NA	3319	NR_106017	102465635		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.020000	0.547264	
mm_19333.1	chr2	90579357	90579557	-	1	NA	NA	NA	1190	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.035000	0.472637	
mm_38373.1	chr4	138456959	138457159	-	1	NA	NA	NA	1911	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.010000	0.407960	
mm_81282.1	chr9	108306162	108306362	+	1	NA	NA	NA	102	NM_016802	11848	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	0.120000	0.626866	-80(TCTTTTATAGCC,+,0.00)
mm_13967.1	chr2	121429395	121429595	+	1	NA	NA	NA	13106	NM_145973	269344	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	0.020000	0.402985	
mm_90545.1	chr10	128092579	128092779	+	1	NA	NA	NA	-104	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.090000	0.696517	54(GCCCCTTTAAGC,-,0.00),56(CCCTTTAAGCGC,+,0.00)
mm_97674.1	chr11	79711267	79711467	+	1	NA	NA	NA	-602	NR_029579	387188		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	0.120000	0.736318	
mm_123490.1	chr14	66077688	66077888	-	1	NA	NA	NA	-19	NM_009618	11495	Mm.422850	NM_009618	ENSMUSG00000022039	Adam2	AI323749|Ftnb|Ph30-beta	a disintegrin and metallopeptidase domain 2	protein-coding	0.040000	0.621891	
mm_87570.1	chr10	56386213	56386413	+	1	NA	NA	NA	9013	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.010000	0.378109	
mm_20075.1	chr2	120563737	120563937	-	1	NA	NA	NA	-6	NM_011743	20402	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|H3a|Sh3bp3|Znf106|sirm	zinc finger protein 106	protein-coding	0.115000	0.676617	
mm_115583.1	chr13	11768792	11768992	-	1	NA	NA	NA	246840	NR_027813	664793	Mm.410565	NR_027813		Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo	0.005000	0.298507	
mm_19610.1	chr2	102746634	102746834	-	1	NA	NA	NA	40296	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.015000	0.507463	
mm_167909.1	chrX	84772646	84772846	+	1	NA	NA	NA	-275549	NM_001314038	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.015000	0.432836	-69(GACTATTAAAGC,-,0.00),40(GCATTTTAAAGC,-,0.00)
mm_78005.1	chr9	11104335	11104535	+	1	NA	NA	NA	-199660	NM_001170787	244682	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0.035000	0.616915	
mm_153307.1	chr19	38022703	38022903	-	1	NA	NA	NA	20774	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.010000	0.422886	
mm_32616.1	chr4	114163364	114163564	+	1	NA	NA	NA	80	NM_001166027	230623	Mm.124482	NM_177669	ENSMUSG00000057977	Skint11	A630098G03Rik|Gm569	selection and upkeep of intraepithelial T cells 11	protein-coding	0.000000	0.393035	
mm_70435.1	chr8	11558323	11558523	+	1	NA	NA	NA	13	NM_001302459	26356	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.110000	0.686567	
mm_155807.1	chrX	99136029	99136229	+	1	NA	NA	NA	68	NM_010110	13641	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	0.070000	0.616915	
mm_104187.1	chr11	87801001	87801201	-	1	NA	NA	NA	7317	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.040000	0.502488	
mm_150797.1	chr19	44303449	44303649	+	1	NA	NA	NA	378	NR_039574	100628619		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.015000	0.467662	
mm_153716.1	chr19	44403150	44403350	-	1	NA	NA	NA	4459	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.035000	0.542289	
mm_97641.1	chr11	79276486	79276686	+	1	NA	NA	NA	-21891	NM_019653	78889	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.000000	0.442786	
mm_79223.1	chr9	49559127	49559327	+	1	NA	NA	NA	40939	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.005000	0.248756	
mm_46347.1	chr5	102479895	102480095	-	1	NA	NA	NA	-1396	NM_146161	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.010000	0.472637	
mm_84787.1	chr9	76581933	76582133	-	1	NA	NA	NA	-36229	NM_001045518	208994	Mm.256929	NM_001045518	ENSMUSG00000032358	Fam83b	C530008M07Rik|Gm516	family with sequence similarity 83, member B	protein-coding	0.005000	0.368159	-36(CTTTTTAGACAG,+,0.00)
mm_11570.1	chr2	32901722	32901922	+	1	NA	NA	NA	25688	NM_146119	227737	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.005000	0.557214	
mm_55707.1	chr6	72958305	72958505	-	1	NA	NA	NA	78	NM_025284	19240	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.125000	0.711443	-29(GTGTATATAAGA,-,0.00)
mm_44364.1	chr5	17806302	17806502	-	1	NA	NA	NA	29494	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.388060	
mm_104325.1	chr11	93965862	93966062	-	1	NA	NA	NA	2559	NM_008704	18102	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	0.025000	0.522388	-44(CGCTTGAAAAGG,-,0.00)
mm_36781.1	chr4	102989440	102989640	-	1	NA	NA	NA	215	NR_040444	100504717	Mm.394445	NR_040444	ENSMUSG00000085181	Gm12709	OTTMUSG00000008056	predicted gene 12709	ncRNA	0.020000	0.467662	
mm_52464.1	chr6	113697284	113697484	+	1	NA	NA	NA	334	NM_001033463	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.195000	0.815920	
mm_94835.1	chr11	23497721	23497921	+	1	NA	NA	NA	218	NM_001290655	268390	Mm.13148	NM_172391	ENSMUSG00000020288	Ahsa2	-	AHA1, activator of heat shock protein ATPase 2	protein-coding	0.125000	0.746269	
mm_70242.1	chr8	3353594	3353794	+	1	NA	NA	NA	279	NM_001033378	319493	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0.015000	0.527363	
mm_124144.1	chr14	87141726	87141926	-	1	NA	NA	NA	-712	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding	0.045000	0.462687	-29(CCTTAAAAGTCC,+,0.00)
mm_45504.1	chr5	72501791	72501991	-	1	NA	NA	NA	2317	NM_016869	53419	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.005000	0.472637	
mm_81208.1	chr9	107579806	107580006	+	1	NA	NA	NA	-763	NM_019750	56441	Mm.10305	NM_019750	ENSMUSG00000079334	Nat6	AI225910|Fus2	N-acetyltransferase 6	protein-coding	0.005000	0.547264	
mm_88636.1	chr10	79916872	79917072	+	1	NA	NA	NA	1	NM_053244	114229	Mm.191035	NM_053244	ENSMUSG00000035773	Kiss1r	Gpr54|KiSS-1	KISS1 receptor	protein-coding	0.090000	0.696517	
mm_75407.1	chr8	46294497	46294697	-	1	NA	NA	NA	74	NM_173789	234219	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	0.075000	0.557214	-75(GCCTATTAAAGG,-,0.00),-33(GGCTTTAAAACG,-,0.00),-32(GCTTTAAAACGC,+,0.00)
mm_81981.1	chr9	121350808	121351008	+	1	NA	NA	NA	-16050	NM_175114	67095	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.010000	0.462687	
mm_33415.1	chr4	129928695	129928895	+	1	NA	NA	NA	22569	NR_045190	319894	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	0.030000	0.567164	
mm_69586.1	chr7	135704665	135704865	-	1	NA	NA	NA	11614	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.020000	0.452736	
mm_113610.1	chr13	41253981	41254181	+	1	NA	NA	NA	4237	NM_001135577	108934	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.015000	0.393035	
mm_80435.1	chr9	77923626	77923826	+	1	NA	NA	NA	6361	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.025000	0.447761	6(GACCTTATAAGG,-,0.00),8(CCTTATAAGGTA,+,0.00)
mm_169455.1	chr1	46181008	46181208	+	1	NA	NA	NA	114370	NM_001160386	227058	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	0.035000	0.477612	-35(CTCTTTAAAGAG,+,0.00),-35(CTCTTTAAAGAG,-,0.00)
mm_163063.1	chr11	66563438	66563638	+	1	NA	NA	NA	-37412	NM_001034874	380702	Mm.351764	NM_001034874	ENSMUSG00000053930	Shisa6	Gm879|ckamp52	shisa family member 6	protein-coding	0.005000	0.457711	-49(CTATATAAAAGG,-,0.00)
mm_3340.1	chr1	137967658	137967858	+	1	NA	NA	NA	1119	NR_029820	723890		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA	0.020000	0.402985	
mm_155377.1	chrX	71638475	71638675	+	1	NA	NA	NA	-25092	NM_010340	14765	Mm.33336	NM_010340	ENSMUSG00000056380	Gpr50	H9	G-protein-coupled receptor 50	protein-coding	0.010000	0.502488	
mm_145833.1	chr18	65442121	65442321	+	1	NA	NA	NA	11224	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.402985	
mm_103458.1	chr11	76341536	76341736	-	1	NA	NA	NA	57505	NM_008750	18230	Mm.27915	NM_008750	ENSMUSG00000020844	Nxn	l11Jus13	nucleoredoxin	protein-coding	0.000000	0.278607	
mm_14768.1	chr2	145675417	145675617	+	1	NA	NA	NA	-25678	NR_033220	408057	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.050000	0.641791	
mm_92126.1	chr10	64072788	64072988	-	1	NA	NA	NA	17367	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.015000	0.378109	
mm_11699.1	chr2	35979243	35979443	+	1	NA	NA	NA	281	NM_029774	74410	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0.165000	0.791045	
mm_106742.1	chr12	3907589	3907789	+	1	NA	NA	NA	15945	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.055000	0.552239	
mm_41886.1	chr5	105481486	105481686	+	1	NA	NA	NA	-37885	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.020000	0.527363	
mm_158608.1	chrX	152342345	152342545	-	1	NA	NA	NA	39	NM_029836	52808	Mm.9997	NM_029836	ENSMUSG00000041096	Tspyl2	CDA1|CINAP|DENTT|DXBwg1396e|DXHXS1008E|E130307F10Rik	TSPY-like 2	protein-coding	0.070000	0.686567	
mm_10573.1	chr2	18064575	18064775	+	1	NA	NA	NA	90	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.120000	0.756219	
mm_156366.1	chrX	139610124	139610324	+	1	NA	NA	NA	-396	NM_023270	66889	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	0.010000	0.517413	
mm_68818.1	chr7	126082285	126082485	-	1	NA	NA	NA	26	NM_001101488	269994	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.165000	0.796020	
mm_69484.1	chr7	133782684	133782884	-	1	NA	NA	NA	1	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.030000	0.562189	
mm_146777.1	chr18	20059503	20059703	-	1	NA	NA	NA	-49	NM_001317365	13506	Mm.280547	NM_013505	ENSMUSG00000024331	Dsc2	AW228162	desmocollin 2	protein-coding	0.025000	0.621891	
mm_10667.1	chr2	20968581	20968781	+	1	NA	NA	NA	-193	NR_033225	433408	Mm.386941	NR_033225		Gm13375	OTTMUSG00000011664	predicted gene 13375	ncRNA	0.165000	0.781095	
mm_87648.1	chr10	58407591	58407791	+	1	NA	NA	NA	13318	NM_001346676	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.015000	0.427861	
mm_100777.1	chr11	4807285	4807485	-	1	NA	NA	NA	25750	NM_001252253	18016	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	0.005000	0.363184	
mm_34566.1	chr4	149854536	149854736	+	1	NA	NA	NA	-80369	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.060000	0.547264	
mm_148293.1	chr18	82585196	82585396	-	1	NA	NA	NA	30788	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.015000	0.467662	
mm_94694.1	chr11	20038977	20039177	+	1	NA	NA	NA	73874	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.020000	0.577114	
mm_126682.1	chr15	84765599	84765799	+	1	NA	NA	NA	-45433	NR_040347	328576	Mm.400211	NR_040347		Gm20556	A430075N02	predicted gene, 20556	ncRNA	0.025000	0.522388	
mm_127244.1	chr15	99601114	99601314	+	1	NA	NA	NA	-186	NM_175087	11831	Mm.202309	NM_175087	ENSMUSG00000043144	Aqp6	AI790337	aquaporin 6	protein-coding	0.015000	0.606965	
mm_139427.1	chr17	53566650	53566850	+	1	NA	NA	NA	-221	NM_020005	18519	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.015000	0.373134	
mm_127154.1	chr15	98570943	98571143	+	1	NA	NA	NA	39	NM_001201322	73863	Mm.66894	NM_001201322	ENSMUSG00000022993	4930415O20Rik	-	RIKEN cDNA 4930415O20 gene	protein-coding	0.015000	0.427861	
mm_134247.1	chr16	13520334	13520534	-	1	NA	NA	NA	-15	NR_037997	70100	Mm.158330	NR_037997	ENSMUSG00000099411	2310015D24Rik	-	RIKEN cDNA 2310015D24 gene	ncRNA	0.015000	0.502488	
mm_35089.1	chr4	8142720	8142920	-	1	NA	NA	NA	96221	NM_007592	12319	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	0.010000	0.338308	
mm_142731.1	chr17	48348613	48348813	-	1	NA	NA	NA	2312	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.045000	0.597015	
mm_142953.1	chr17	56117174	56117374	-	1	NA	NA	NA	24	NM_001077348	66968	Mm.254985	NM_025874	ENSMUSG00000011305	Plin5	2310076L09Rik|AI415325|AW109675|Lsdp5|MLDP|PAT-1	perilipin 5	protein-coding	0.050000	0.646766	
mm_41308.1	chr5	90468526	90468726	+	1	NA	NA	NA	7756	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.497512	
mm_48488.1	chr5	142529997	142530197	-	1	NA	NA	NA	-21	NM_019943	56522	Mm.441372	NM_019943	ENSMUSG00000074817	Papolb	PAP|Paplob|Papola-ps|Papt|Plap-ps|Tpap	poly (A) polymerase beta (testis specific)	protein-coding	0.130000	0.696517	
mm_81896.1	chr9	119894795	119894995	+	1	NA	NA	NA	0	NM_026236	67561	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	0.085000	0.641791	
mm_60486.1	chr7	44478444	44478644	+	1	NA	NA	NA	-5973	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.512438	
mm_115690.1	chr13	13968810	13969010	-	1	NA	NA	NA	14236	NM_178640	97884	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0.005000	0.492537	
mm_159130.1	chr2	74726658	74726858	+	1	NA	NA	NA	688	NR_029566	387144		NR_029566	ENSMUSG00000065500	Mir10b	Mirn10b|mir-10b|mmu-mir-10b	microRNA 10b	ncRNA	0.015000	0.527363	
mm_158972.1	chr1	107278273	107278473	-	1	NA	NA	NA	-2	NM_201363	381286	Mm.337362	NM_201363	ENSMUSG00000073601	Serpinb3c	1110001H02Rik|1110013A16Rik|Scca2|Serpinb4	serine (or cysteine) peptidase inhibitor, clade B, member 3C	protein-coding	0.000000	0.393035	
mm_109025.1	chr12	103895008	103895208	+	1	NA	NA	NA	9842	NM_009245	20702	Mm.439692	NM_009245	ENSMUSG00000079015	Serpina1c	Pi3|Pi6|Skalp|Spi1-3|Spi1-6|Wap3	serine (or cysteine) peptidase inhibitor, clade A, member 1C	protein-coding	0.020000	0.482587	
mm_77552.1	chr8	123278244	123278444	-	1	NA	NA	NA	-24122	NM_028200	72325	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	0.030000	0.582090	
mm_163789.1	chr14	9658470	9658670	+	1	NA	NA	NA	-225525	NR_030680	100042415	Mm.235938	NR_030680		Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.005000	0.398010	
mm_31126.1	chr4	43046203	43046403	+	1	NA	NA	NA	-83	NM_172691	230088	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0.035000	0.606965	
mm_169316.1	chr14	106454926	106455126	+	1	NA	NA	NA	31494	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.010000	0.412935	
mm_102719.1	chr11	67114846	67115046	-	1	NA	NA	NA	5134	NR_038055	74184	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	0.030000	0.487562	
mm_67548.1	chr7	81493815	81494015	-	1	NA	NA	NA	10	NM_021492	11775	Mm.322894	NM_021492	ENSMUSG00000062444	Ap3b2	AI549966|AU042881|Naptb|[b]-NAP|beta-NAP|beta3B	adaptor-related protein complex 3, beta 2 subunit	protein-coding	0.040000	0.601990	
mm_111625.1	chr12	102423658	102423858	-	1	NA	NA	NA	16055	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.035000	0.537313	
mm_20908.1	chr2	150362631	150362831	-	1	NA	NA	NA	34	NM_027017	69277	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	0.025000	0.497512	
mm_49402.1	chr6	28426285	28426485	+	1	NA	NA	NA	-1516	NM_019569	56223	Mm.31708	NM_019569	ENSMUSG00000029707	Fscn3	-	fascin actin-bundling protein 3	protein-coding	0.010000	0.522388	
mm_169849.1	chr16	31912026	31912226	+	1	NA	NA	NA	-21725	NM_172822	239827	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.015000	0.412935	
mm_152719.1	chr19	17837531	17837731	-	1	NA	NA	NA	1	NM_001163144	18552	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding	0.120000	0.731343	
mm_17742.1	chr2	32712952	32713152	-	1	NA	NA	NA	-80	NR_039536	100628606		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0.125000	0.796020	
mm_75088.1	chr8	33929855	33930055	-	1	NA	NA	NA	-92	NM_001042675	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.085000	0.751244	
mm_151677.1	chr19	4201507	4201707	-	1	NA	NA	NA	-4	NM_011237	19367	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0.075000	0.547264	
mm_60267.1	chr7	43841841	43842041	+	1	NA	NA	NA	-328	NM_026806	68668	Mm.458122	NM_026806	ENSMUSG00000074155	Klk5	1110030O19Rik	kallikrein related-peptidase 5	protein-coding	0.005000	0.601990	
mm_138544.1	chr17	35263201	35263401	+	1	NA	NA	NA	178	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.120000	0.751244	
mm_60054.1	chr7	31149912	31150112	+	1	NA	NA	NA	1038	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.030000	0.507463	
mm_121911.1	chr14	21989384	21989584	-	1	NA	NA	NA	117	NM_145459	218820	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.075000	0.651741	
mm_1239.1	chr1	62796056	62796256	+	1	NA	NA	NA	-1424	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.015000	0.412935	
mm_78588.1	chr9	37367569	37367769	+	1	NA	NA	NA	63	NM_175189	72927	Mm.266133	NM_175189	ENSMUSG00000046240	Hepacam	2900042E01Rik|Glialcam|Hepn1	hepatocyte cell adhesion molecule	protein-coding	0.030000	0.557214	
mm_58383.1	chr6	149305369	149305569	-	1	NA	NA	NA	-3945	NM_001289661	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.010000	0.502488	
mm_131032.1	chr16	3744071	3744271	+	1	NA	NA	NA	72	NM_148924	74120	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.090000	0.621891	
mm_118211.1	chr13	110127650	110127850	-	1	NA	NA	NA	152456	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding	0.020000	0.532338	-80(TTCCATATAAGG,-,0.00),-78(CCATATAAGGAG,+,0.00)
mm_79628.1	chr9	59292500	59292700	+	1	NA	NA	NA	1028	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.010000	0.358209	
mm_103266.1	chr11	71285165	71285365	-	1	NA	NA	NA	-33	NR_027858	627984	Mm.390378	NM_001039234	ENSMUSG00000092528	Nlrp1c-ps	Nalp1c|Nlrp1c|OTTMUSG00000006090	NLR family, pyrin domain containing 1C, pseudogene	pseudo	0.010000	0.487562	
mm_167811.1	chr9	123931021	123931221	-	1	NA	NA	NA	37571	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.015000	0.482587	
mm_43123.1	chr5	125003353	125003553	+	1	NA	NA	NA	-22	NM_028443	73121	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.065000	0.731343	
mm_14621.1	chr2	136770049	136770249	+	1	NA	NA	NA	56699	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.015000	0.467662	
mm_5884.1	chr1	53978462	53978662	-	1	NA	NA	NA	129138	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.010000	0.517413	
mm_107370.1	chr12	32850616	32850816	+	1	NA	NA	NA	26600	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.005000	0.363184	
mm_24269.1	chr3	89188308	89188508	+	1	NA	NA	NA	5183	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.015000	0.592040	
mm_33384.1	chr4	129575543	129575743	+	1	NA	NA	NA	-2002	NM_001162433	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.020000	0.497512	
mm_61795.1	chr7	83964414	83964614	+	1	NA	NA	NA	72514	NM_023403	67943	Mm.117365	NM_023403	ENSMUSG00000038503	Mesdc2	2210015O11Rik|AW537813|mKIAA0081|mesd|msd	mesoderm development candidate 2	protein-coding	0.000000	0.527363	
mm_103045.1	chr11	69797272	69797472	-	1	NA	NA	NA	-1435	NM_009601	11443	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	0.010000	0.452736	
mm_167384.1	chr8	94524749	94524949	+	1	NA	NA	NA	-8179	NM_153507	234577	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0.000000	0.527363	
mm_80268.1	chr9	72958759	72958959	+	1	NA	NA	NA	74	NM_001163725	67685	Mm.31817	NM_026314	ENSMUSG00000089865	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0.090000	0.646766	
mm_87251.1	chr10	41476259	41476459	+	1	NA	NA	NA	45	NM_138315	171580	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0.055000	0.641791	
mm_11827.1	chr2	44957311	44957511	+	1	NA	NA	NA	65766	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.000000	0.472637	
mm_166902.1	chr7	28540726	28540926	+	1	NA	NA	NA	-59	NM_026716	68416	Mm.25210	NM_026716	ENSMUSG00000084174	Sycn	0910001K16Rik|1810038B08Rik|SYL	syncollin	protein-coding	0.010000	0.532338	
mm_10400.1	chr2	13575423	13575623	+	1	NA	NA	NA	1212	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.025000	0.552239	
mm_136215.1	chr16	89960376	89960576	-	1	NA	NA	NA	351	NM_009384	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.040000	0.552239	
mm_171878.1	chr5	32578773	32578973	+	1	NA	NA	NA	-32298	NM_001205133	22612	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	0.000000	0.527363	-15(CCTTTTATAAGC,+,0.00),-15(CCTTTTATAAGC,-,0.00)
mm_157888.1	chrX	75874463	75874663	-	1	NA	NA	NA	11	NM_145629	102866	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	0.045000	0.601990	
mm_95481.1	chr11	51262850	51263050	+	1	NA	NA	NA	1	NM_177567	193286	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0.090000	0.641791	
mm_98546.1	chr11	95010273	95010473	+	1	NA	NA	NA	494	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.095000	0.681592	
mm_147044.1	chr18	34908044	34908244	-	1	NA	NA	NA	23859	NM_144866	225363	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.010000	0.368159	
mm_32631.1	chr4	114987231	114987431	+	1	NA	NA	NA	-103	NM_025647	66588	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	0.075000	0.601990	
mm_70335.1	chr8	4522018	4522218	+	1	NA	NA	NA	28713	NM_026058	67260	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0.005000	0.507463	
mm_3460.1	chr1	150103925	150104125	+	1	NA	NA	NA	3994	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.527363	
mm_146592.1	chr18	9400276	9400476	-	1	NA	NA	NA	49774	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.005000	0.363184	74(CCTTTAAGGAGC,+,0.00)
mm_23223.1	chr3	49062327	49062527	+	1	NA	NA	NA	-453327	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo	0.025000	0.482587	
mm_167870.1	chrX	33560805	33561005	-	1	NA	NA	NA	16409	NM_001145038	100040732	Mm.465135	NM_001145038	ENSMUSG00000078324	Btbd35f14	Gm2933	BTB domain containing 35, family member 14	protein-coding	0.010000	0.288557	
mm_119996.1	chr14	55604416	55604616	+	1	NA	NA	NA	-63	NM_001159418	16391	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0.005000	0.542289	
mm_106016.1	chr11	116012619	116012819	-	1	NA	NA	NA	0	NM_016905	14635	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0.120000	0.746269	
mm_34914.1	chr4	155705263	155705463	+	1	NA	NA	NA	548	NM_026899	68991	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0.110000	0.611940	
mm_151913.1	chr19	5799624	5799824	-	1	NA	NA	NA	2948	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.015000	0.442786	86(GCTTTAATGACC,+,0.00)
mm_68915.1	chr7	126460678	126460878	-	1	NA	NA	NA	2295	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.025000	0.552239	
mm_58583.1	chr7	4922770	4922970	+	1	NA	NA	NA	619	NM_201355	269854	Mm.42652	NM_201355	ENSMUSG00000035285	Nat14	BC047219	N-acetyltransferase 14	protein-coding	0.040000	0.626866	
mm_117499.1	chr13	78199799	78199999	-	1	NA	NA	NA	-1026	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.015000	0.388060	
mm_63479.1	chr7	127745705	127745905	+	1	NA	NA	NA	-970	NM_172748	233902	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.060000	0.527363	
mm_47212.1	chr5	121009312	121009512	-	1	NA	NA	NA	126	NM_011286	19894	Mm.181166	NM_011286	ENSMUSG00000029608	Rph3a	2900002P20Rik|AU022689|AW108370	rabphilin 3A	protein-coding	0.035000	0.572139	
mm_79006.1	chr9	45430248	45430448	+	1	NA	NA	NA	55	NM_001081270	114873	Mm.325499	NM_001081270	ENSMUSG00000032087	Dscaml1	4921507G06Rik|4930435C18Rik|BB239540|mKIAA1132	Down syndrome cell adhesion molecule like 1	protein-coding	0.120000	0.786070	
mm_84345.1	chr9	64242613	64242813	-	1	NA	NA	NA	7512	NM_033607	93841	Mm.390180	NM_033607	ENSMUSG00000035337	Uchl4	-	ubiquitin carboxyl-terminal esterase L4	protein-coding	0.005000	0.402985	
mm_7360.1	chr1	106711482	106711682	-	1	NA	NA	NA	2708	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.025000	0.472637	
mm_25287.1	chr3	105803497	105803697	+	1	NA	NA	NA	-2216	NM_145541	109905	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein-1a	protein-coding	0.020000	0.492537	
mm_32270.1	chr4	102625103	102625303	+	1	NA	NA	NA	35360	NM_001177981	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.025000	0.507463	
mm_41705.1	chr5	101764758	101764958	+	1	NA	NA	NA	-272	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.105000	0.691542	
mm_122932.1	chr14	54961707	54961907	-	1	NA	NA	NA	4800	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.010000	0.547264	
mm_166903.1	chr7	28540912	28541112	+	1	NA	NA	NA	127	NM_026716	68416	Mm.25210	NM_026716	ENSMUSG00000084174	Sycn	0910001K16Rik|1810038B08Rik|SYL	syncollin	protein-coding	0.035000	0.601990	
mm_104830.1	chr11	99132433	99132633	-	1	NA	NA	NA	22544	NM_001301713	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.015000	0.562189	
mm_71452.1	chr8	46521579	46521779	+	1	NA	NA	NA	-30390	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.000000	0.328358	
mm_40061.1	chr5	33996638	33996838	+	1	NA	NA	NA	754	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.180000	0.796020	
mm_158706.1	chrX	162159869	162160069	-	1	NA	NA	NA	-528	NM_001290526	195727	Mm.336313	NM_001081052	ENSMUSG00000059493	Nhs	Gm389|Gm48|Nhs1|Xcat	Nance-Horan syndrome (human)	protein-coding	0.110000	0.691542	
mm_81680.1	chr9	111058096	111058296	+	1	NA	NA	NA	-678	NM_001302376	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.010000	0.572139	
mm_58770.1	chr7	15896071	15896271	+	1	NA	NA	NA	47	NM_001033638	546024	Mm.259041	NM_001033638	ENSMUSG00000074365	Crxos	AA606869|AY590891|Crxos1|Egam1	cone-rod homeobox, opposite strand	protein-coding	0.015000	0.532338	
mm_50871.1	chr6	55452092	55452292	+	1	NA	NA	NA	214	NM_007407	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	0.135000	0.696517	
mm_154441.1	chrM	1238	1438	-	1	NA	NA	NA	NA	NA									0.020000	0.338308	
mm_10878.1	chr2	25242156	25242356	+	1	NA	NA	NA	-673	NM_176834	68846	Mm.24777	NM_176834	ENSMUSG00000044628	Rnf208	1110061N23Rik	ring finger protein 208	protein-coding	0.185000	0.820896	
mm_96661.1	chr11	69406766	69406966	+	1	NA	NA	NA	6809	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.010000	0.636816	
mm_15082.1	chr2	153161842	153162042	+	1	NA	NA	NA	641	NM_133847	99237	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.040000	0.587065	
mm_172914.1	chr9	64176040	64176240	+	1	NA	NA	NA	708	NR_028548	100217453		NR_028548	ENSMUSG00000094411	Snord16a	MBII-98	small nucleolar RNA, C/D box 16A	snoRNA	0.010000	0.432836	
mm_11447.1	chr2	32081457	32081657	+	1	NA	NA	NA	2148	NM_175511	241303	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.020000	0.522388	
mm_82342.1	chr9	11107960	11108160	-	1	NA	NA	NA	-203285	NM_001170787	244682	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0.010000	0.467662	-33(GACTATAAAAGC,-,0.00)
mm_168674.1	chr11	93996445	93996645	+	1	NA	NA	NA	454	NM_027569	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.115000	0.721393	
mm_129084.1	chr15	75894444	75894644	-	1	NA	NA	NA	-63	NM_172607	223646	Mm.288368	NM_172607	ENSMUSG00000022574	Naprt	9130210N20Rik|Naprt1	nicotinate phosphoribosyltransferase	protein-coding	0.030000	0.537313	21(CCTTTTAAGTTG,+,0.00)
mm_91967.1	chr10	61415520	61415720	-	1	NA	NA	NA	-2352	NM_013611	18119	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0.015000	0.552239	
mm_82250.1	chr9	4795878	4796078	-	1	NA	NA	NA	256	NM_001113180	14802	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.050000	0.577114	-36(GGGCATAAAAAG,-,0.00)
mm_167759.1	chr9	110422522	110422722	-	1	NA	NA	NA	2814	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.005000	0.497512	
mm_133591.1	chr16	91425320	91425520	+	1	NA	NA	NA	19185	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.000000	0.447761	-98(CACCATATAAAC,-,0.00),-96(CCATATAAACCA,+,0.00),60(TTTTTTATGGCC,+,0.00)
mm_22838.1	chr3	27617251	27617451	+	1	NA	NA	NA	-32356	NR_037275	100526525		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.005000	0.447761	
mm_68504.1	chr7	111081941	111082141	-	1	NA	NA	NA	989	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.065000	0.601990	-28(GGGCTTATAAAG,-,0.00),-26(GCTTATAAAGAC,+,0.00)
mm_32502.1	chr4	108459915	108460115	+	1	NA	NA	NA	589	NM_175472	230594	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.130000	0.751244	
mm_72541.1	chr8	83997243	83997443	+	1	NA	NA	NA	-329	NM_001081415	666704	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.125000	0.706468	
mm_109216.1	chr12	108713677	108713877	+	1	NA	NA	NA	-11471	NM_027299	70059	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	0.040000	0.467662	
mm_164238.1	chr15	91673243	91673443	+	1	NA	NA	NA	119	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.060000	0.601990	
mm_119100.1	chr14	30898626	30898826	+	1	NA	NA	NA	12250	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.010000	0.517413	
mm_45319.1	chr5	65454627	65454827	-	1	NA	NA	NA	-18885	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.020000	0.502488	
mm_156068.1	chrX	109161027	109161227	+	1	NA	NA	NA	-35629	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.015000	0.368159	
mm_128701.1	chr15	63479534	63479734	-	1	NA	NA	NA	-26	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA	0.000000	0.432836	
mm_139514.1	chr17	56584828	56585028	+	1	NA	NA	NA	-54	NM_001163300	224903	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	0.155000	0.716418	
mm_126726.1	chr15	85503814	85504014	+	1	NA	NA	NA	-687	NM_001256072	328577	Mm.212960	NM_001256072	ENSMUSG00000096607	7530416G11Rik	-	RIKEN cDNA 7530416G11 gene	protein-coding	0.015000	0.507463	
mm_139987.1	chr17	72848870	72849070	+	1	NA	NA	NA	12266	NM_027166	383295	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee-like 5 (Drosophila)	protein-coding	0.010000	0.348259	
mm_142746.1	chr17	48432632	48432832	-	1	NA	NA	NA	-4	NM_009694	11811	Mm.281793	NM_009694	ENSMUSG00000040694	Apobec2	Arp1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2	protein-coding	0.015000	0.577114	-33(GCTTATAAAGCC,+,0.00)
mm_128631.1	chr15	59081783	59081983	-	1	NA	NA	NA	143	NM_001146180	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.050000	0.467662	
mm_129547.1	chr15	79403463	79403663	-	1	NA	NA	NA	-260	NM_172608	223693	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	0.045000	0.537313	
mm_113119.1	chr13	24501519	24501719	+	1	NA	NA	NA	-80570	NM_001286100	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.055000	0.562189	
mm_7640.1	chr1	127976410	127976610	-	1	NA	NA	NA	107737	NM_178690	226407	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0.015000	0.388060	
mm_13992.1	chr2	121866858	121867058	+	1	NA	NA	NA	-12	NM_199038	319996	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	0.130000	0.761194	
mm_22230.1	chr2	174433460	174433660	-	1	NA	NA	NA	5479	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.015000	0.547264	
mm_132789.1	chr16	45025558	45025758	+	1	NA	NA	NA	-68395	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.010000	0.398010	18(GCCCCTTAAAGG,-,0.00),20(CCCTTAAAGGTC,+,0.00)
mm_38951.1	chr4	150569780	150569980	-	1	NA	NA	NA	82294	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.065000	0.582090	
mm_40907.1	chr5	75574894	75575094	+	1	NA	NA	NA	3	NM_021099	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	KIT proto-oncogene receptor tyrosine kinase	protein-coding	0.095000	0.696517	
mm_48090.1	chr5	136987724	136987924	-	1	NA	NA	NA	135	NM_027318	70103	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	0.060000	0.666667	
mm_94681.1	chr11	18212104	18212304	+	1	NA	NA	NA	116218	NR_131129	327872		NR_131129	ENSMUSG00000085453	Gm12018	OTTMUSG00000005202	predicted gene 12018	ncRNA	0.000000	0.383085	
mm_32414.1	chr4	107036043	107036243	+	1	NA	NA	NA	30723	NM_025500	56280	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0.010000	0.542289	
mm_69667.1	chr7	139983258	139983458	-	1	NA	NA	NA	3516	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.000000	0.522388	
mm_37892.1	chr4	132533511	132533711	-	1	NA	NA	NA	1803	NM_007512	11983	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0.110000	0.656716	
mm_3860.1	chr1	160978562	160978762	+	1	NA	NA	NA	56	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.015000	0.407960	38(GACTTTAAGGGG,-,0.00)
mm_149600.1	chr19	16320444	16320644	+	1	NA	NA	NA	-5540	NR_105832	102465218		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.000000	0.388060	
mm_38933.1	chr4	150192531	150192731	-	1	NA	NA	NA	8504	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.030000	0.532338	
mm_109934.1	chr12	11150227	11150427	-	1	NA	NA	NA	46	NM_173417	238076	Mm.113278	NM_173417	ENSMUSG00000043673	Kcns3	-	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	protein-coding	0.150000	0.786070	
mm_164734.1	chr17	68003968	68004168	-	1	NA	NA	NA	40	NM_172964	268970	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0.110000	0.706468	
mm_2193.1	chr1	89120764	89120964	+	1	NA	NA	NA	50402	NM_133816	98402	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.010000	0.442786	
mm_57946.1	chr6	134887725	134887925	-	1	NA	NA	NA	36	NM_001167699	14760	Mm.4787	NM_008157	ENSMUSG00000032641	Gpr19	-	G protein-coupled receptor 19	protein-coding	0.015000	0.542289	
mm_17934.1	chr2	35882605	35882805	-	1	NA	NA	NA	63515	NR_040618	77665	Mm.400558	NR_040618	ENSMUSG00000086449	9030204H09Rik	-	RIKEN cDNA 9030204H09 gene	ncRNA	0.015000	0.512438	
mm_34668.1	chr4	150919475	150919675	+	1	NA	NA	NA	-580	NM_011612	21942	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.010000	0.457711	
mm_97175.1	chr11	75532039	75532239	+	1	NA	NA	NA	27	NM_001199283	215113	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.070000	0.626866	
mm_9842.1	chr1	184612813	184613013	-	1	NA	NA	NA	-55222	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.015000	0.517413	
mm_169461.1	chr14	6427001	6427201	-	1	NA	NA	NA	-139851	NM_001270812	100861615	Mm.488431	NM_001270812	ENSMUSG00000079396	LOC100861615	-	alpha takusan-like	protein-coding	0.130000	0.761194	
mm_28170.1	chr3	87930052	87930252	-	1	NA	NA	NA	43	NM_153562	229503	Mm.296008	NM_153562	ENSMUSG00000004896	Rrnad1	-	ribosomal RNA adenine dimethylase domain containing 1	protein-coding	0.100000	0.606965	
mm_167876.1	chrX	37754512	37754712	+	1	NA	NA	NA	4	NM_008818	18617	Mm.423066	NM_008818	ENSMUSG00000095180	Rhox5	AA409564|Pem	reproductive homeobox 5	protein-coding	0.035000	0.532338	
mm_154936.1	chrX	35897735	35897935	+	1	NA	NA	NA	9003	NM_001009947	75974	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	0.020000	0.358209	
mm_144140.1	chr18	4994512	4994712	+	1	NA	NA	NA	-51977	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.010000	0.537313	-28(GGCCATAAAAGG,-,0.00)
mm_152955.1	chr19	29252000	29252200	-	1	NA	NA	NA	297	NM_008413	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.120000	0.761194	
mm_38973.1	chr4	150907227	150907427	-	1	NA	NA	NA	2594	NM_020569	57320	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.025000	0.532338	
mm_33512.1	chr4	130926032	130926232	+	1	NA	NA	NA	12798	NM_010686	16792	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3	lysosomal-associated protein transmembrane 5	protein-coding	0.030000	0.562189	
mm_46449.1	chr5	105116657	105116857	-	1	NA	NA	NA	-6465	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.000000	0.383085	
mm_126550.1	chr15	82059051	82059251	+	1	NA	NA	NA	0	NM_001166475	328573	Mm.399189	NM_001166475	ENSMUSG00000075524	4930407I10Rik	Gm747	RIKEN cDNA 4930407I10 gene	protein-coding	0.000000	0.517413	
mm_109084.1	chr12	104413674	104413874	+	1	NA	NA	NA	7066	NM_009252	20716	Mm.482074	NM_009252	ENSMUSG00000021091	Serpina3n	Spi2-2|Spi2.2|Spi2/eb.4	serine (or cysteine) peptidase inhibitor, clade A, member 3N	protein-coding	0.000000	0.507463	
mm_18370.1	chr2	59920314	59920514	-	1	NA	NA	NA	-37808	NM_028118	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.050000	0.532338	
mm_130553.1	chr15	98992508	98992708	-	1	NA	NA	NA	6643	NR_045991	75951	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.025000	0.512438	
mm_95774.1	chr11	54909445	54909645	+	1	NA	NA	NA	6691	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.040000	0.587065	
mm_142449.1	chr17	45592506	45592706	-	1	NA	NA	NA	-213	NM_022880	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.015000	0.517413	82(GCTTATAAACTG,+,0.00)
mm_40092.1	chr5	34549475	34549675	+	1	NA	NA	NA	-1	NM_001145859	24055	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.070000	0.666667	
mm_170408.1	chr1	86529376	86529576	+	1	NA	NA	NA	2740	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.005000	0.502488	
mm_9680.1	chr1	178332165	178332365	-	1	NA	NA	NA	5519	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.015000	0.398010	
mm_56160.1	chr6	87965428	87965628	-	1	NA	NA	NA	15954	NM_198622	243529	Mm.33796	NM_198622	ENSMUSG00000044927	H1fx	Gm461|H1.10|H1X	H1 histone family, member X	protein-coding	0.000000	0.398010	-7(TTTTTTAAAGCA,+,0.00)
mm_118558.1	chr14	17981408	17981608	+	1	NA	NA	NA	-136	NM_009380	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.005000	0.432836	
mm_69968.1	chr7	142376772	142376972	-	1	NA	NA	NA	-3126	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.020000	0.487562	
mm_1478.1	chr1	71557051	71557251	+	1	NA	NA	NA	-5	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.095000	0.711443	
mm_111666.1	chr12	103336802	103337002	-	1	NA	NA	NA	19099	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.015000	0.547264	
mm_124291.1	chr14	103054697	103054897	-	1	NA	NA	NA	7785	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.562189	-64(AGCTCTTAAAGG,-,0.00),-63(GCTCTTAAAGGC,+,0.00),-62(CTCTTAAAGGCC,+,0.00)
mm_167777.1	chr9	113793198	113793398	+	1	NA	NA	NA	-32	NM_001286603	76499	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.040000	0.547264	
mm_1303.1	chr1	64690355	64690555	+	1	NA	NA	NA	204	NR_038009	69941	Mm.69044	NR_038009	ENSMUSG00000087213	2810408I11Rik	-	RIKEN cDNA 2810408I11 gene	ncRNA	0.040000	0.537313	
mm_19497.1	chr2	93458686	93458886	-	1	NA	NA	NA	3065	NM_001271461	12521	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.015000	0.522388	
mm_67712.1	chr7	89980445	89980645	-	1	NA	NA	NA	431	NM_021876	13626	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	ENSMUSG00000039373|l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	0.130000	0.726368	
mm_98468.1	chr11	94950032	94950232	+	1	NA	NA	NA	13908	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.030000	0.597015	
mm_114596.1	chr13	75763973	75764173	+	1	NA	NA	NA	56589	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.000000	0.373134	54(TTGTTTAAATGG,-,0.00)
mm_77156.1	chr8	111686635	111686835	-	1	NA	NA	NA	2939	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.030000	0.601990	
mm_109327.1	chr12	109564607	109564807	+	1	NA	NA	NA	1015	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.020000	0.383085	-7(TTTTTTAAAGCT,+,0.00)
mm_77690.1	chr8	126588384	126588584	-	1	NA	NA	NA	4952	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.020000	0.353234	
mm_116193.1	chr13	31442028	31442228	-	1	NA	NA	NA	-116042	NM_008239	15220	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	0.000000	0.482587	
mm_92498.1	chr10	78351617	78351817	-	1	NA	NA	NA	-17	NM_053014	28169	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.050000	0.547264	
mm_47175.1	chr5	120745673	120745873	-	1	NA	NA	NA	4075	NM_145227	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.005000	0.462687	
mm_105252.1	chr11	102353206	102353406	-	1	NA	NA	NA	11975	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.030000	0.557214	
mm_90471.1	chr10	127849822	127850022	+	1	NA	NA	NA	-6	NM_147222	216453	Mm.222953	NM_147222	ENSMUSG00000054052	Rdh19	RDH-S|RDH-S2|Rdhs	retinol dehydrogenase 19	protein-coding	0.005000	0.442786	
mm_2390.1	chr1	93509071	93509271	+	1	NA	NA	NA	-2933	NM_145519	227377	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	0.005000	0.437811	
mm_129198.1	chr15	76509614	76509814	-	1	NA	NA	NA	2104	NM_010046	13350	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	0.000000	0.557214	
mm_56501.1	chr6	99334245	99334445	-	1	NA	NA	NA	-67830	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.005000	0.368159	
mm_11135.1	chr2	28469514	28469714	+	1	NA	NA	NA	1548	NM_001166031	118451	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	0.050000	0.557214	
mm_67527.1	chr7	81213043	81213243	-	1	NA	NA	NA	-661	NM_008803	18584	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.105000	0.691542	
mm_158506.1	chrX	142464217	142464417	-	1	NA	NA	NA	-73782	NM_019477	50790	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	0.005000	0.442786	
mm_28623.1	chr3	95106758	95106958	-	1	NA	NA	NA	72	NM_001293707	18720	Mm.296409	NM_008847	ENSMUSG00000028126	Pip5k1a	PI4P5K-I[a]|PIP5K1-alpha|PIP5KIalpha|Pipk5a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	protein-coding	0.060000	0.616915	
mm_46464.1	chr5	105121014	105121214	-	1	NA	NA	NA	-10822	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.010000	0.393035	
mm_22402.1	chr2	181241859	181242059	-	1	NA	NA	NA	68	NM_183162	229003	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.030000	0.567164	
mm_25837.1	chr3	129213829	129214029	+	1	NA	NA	NA	-3	NM_001042502	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.070000	0.656716	
mm_161272.1	chr14	7658532	7658732	-	1	NA	NA	NA	-90066	NM_001270842	100041874	Mm.350858	NM_001270842	ENSMUSG00000079364	Gm3558	ENSMUSG00000079364	predicted gene 3558	protein-coding	0.120000	0.756219	
mm_107903.1	chr12	70910541	70910741	+	1	NA	NA	NA	-27216	NM_019785	56444	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0.010000	0.522388	
mm_88385.1	chr10	76449028	76449228	+	1	NA	NA	NA	47	NM_029816	76964	Mm.472489	NM_029816	ENSMUSG00000009114	2610028H24Rik	ORF67	RIKEN cDNA 2610028H24 gene	protein-coding	0.005000	0.557214	
mm_44737.1	chr5	31179822	31180022	-	1	NA	NA	NA	222	NM_027901	71752	Mm.271923	NM_027901	ENSMUSG00000101678	Gtf3c2	1300004C11Rik|2610510G03Rik|AI225816|AU041069|TFIIIC110|mKIAA0011	general transcription factor IIIC, polypeptide 2, beta	protein-coding	0.100000	0.582090	
mm_66765.1	chr7	46728783	46728983	-	1	NA	NA	NA	3720	NM_011316	20211	Mm.3489	NM_011316	ENSMUSG00000040017	Saa4	Saa-4|Saa-5	serum amyloid A 4	protein-coding	0.025000	0.472637	
mm_94177.1	chr10	128919079	128919279	-	1	NA	NA	NA	118	NM_134006	19682	Mm.439856	NM_134006	ENSMUSG00000025350	Rdh5	9-cis|AI987873|RDH4|cRDH	retinol dehydrogenase 5	protein-coding	0.010000	0.517413	56(TGCTATAAAAAA,-,0.00)
mm_93623.1	chr10	117277902	117278102	-	1	NA	NA	NA	4270	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.015000	0.512438	
mm_47041.1	chr5	116024235	116024435	-	1	NA	NA	NA	93	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.125000	0.681592	
mm_92129.1	chr10	64090152	64090352	-	1	NA	NA	NA	3	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.045000	0.592040	
mm_122814.1	chr14	54603288	54603488	-	1	NA	NA	NA	2520	NM_028890	74359	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	-	RIKEN cDNA 4931414P19 gene	protein-coding	0.115000	0.711443	
mm_143460.1	chr17	70990685	70990885	-	1	NA	NA	NA	-269	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.110000	0.711443	
mm_89648.1	chr10	97479326	97479526	+	1	NA	NA	NA	-74	NM_001190451	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.010000	0.442786	
mm_121773.1	chr14	19875480	19875680	-	1	NA	NA	NA	36655	NR_105025	52512	Mm.483998	NR_105025		D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.015000	0.402985	
mm_128785.1	chr15	66803926	66804126	-	1	NA	NA	NA	27803	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.015000	0.547264	
mm_48089.1	chr5	136987693	136987893	-	1	NA	NA	NA	166	NM_027318	70103	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	0.075000	0.681592	
mm_146272.1	chr18	77882096	77882296	+	1	NA	NA	NA	-56271	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.030000	0.547264	
mm_79715.1	chr9	61373413	61373613	+	1	NA	NA	NA	1147	NM_001083927	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.065000	0.552239	-33(GCTTATTTAAGC,-,0.00)
mm_17990.1	chr2	37975270	37975470	-	1	NA	NA	NA	199121	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.000000	0.363184	
mm_35649.1	chr4	43523742	43523942	-	1	NA	NA	NA	-288	NM_001277875	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.050000	0.621891	
mm_132224.1	chr16	32644028	32644228	+	1	NA	NA	NA	-515	NM_001110147	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.170000	0.820896	
mm_147429.1	chr18	46311765	46311965	-	1	NA	NA	NA	63	NM_001160399	240261	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.125000	0.716418	
mm_107628.1	chr12	51692545	51692745	+	1	NA	NA	NA	-731	NM_052973	94186	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.020000	0.318408	
mm_118633.1	chr14	21307497	21307697	+	1	NA	NA	NA	-192173	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.005000	0.363184	
mm_165602.1	chr3	50402602	50402802	+	1	NA	NA	NA	40911	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.472637	
mm_38940.1	chr4	150198037	150198237	-	1	NA	NA	NA	2998	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.045000	0.577114	
mm_61599.1	chr7	80026282	80026482	+	1	NA	NA	NA	154	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.120000	0.786070	
mm_101793.1	chr11	46166302	46166502	-	1	NA	NA	NA	-43	NM_172524	214112	Mm.225253	NM_172524	ENSMUSG00000020411	Nipal4	9530066K23Rik	NIPA-like domain containing 4	protein-coding	0.080000	0.701493	
mm_55263.1	chr6	53820361	53820561	-	1	NA	NA	NA	364	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.080000	0.606965	
mm_98477.1	chr11	94950424	94950624	+	1	NA	NA	NA	14300	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.050000	0.606965	
mm_113994.1	chr13	52583156	52583356	+	1	NA	NA	NA	-181	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.065000	0.681592	
mm_6042.1	chr1	59697662	59697862	-	1	NA	NA	NA	5804	NR_028554	100217459		NR_028554		Snord70	MBII-234|snoRNA234	small nucleolar RNA, C/D box 70	snoRNA	0.020000	0.517413	-29(CCTTTTATAAGC,+,0.00),-29(CCTTTTATAAGC,-,0.00)
mm_95087.1	chr11	33529786	33529986	+	1	NA	NA	NA	-16140	NM_023146	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.000000	0.467662	32(AGCTATTTAAAG,-,0.00),34(CTATTTAAAGCC,+,0.00)
mm_90579.1	chr10	128255187	128255387	+	1	NA	NA	NA	1156	NM_133996	28194	Mm.439846	NM_133996	ENSMUSG00000051716	Apon	AI195275|D10Ucla2	apolipoprotein N	protein-coding	0.015000	0.422886	
mm_153157.1	chr19	34255234	34255434	-	1	NA	NA	NA	39	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.035000	0.572139	
mm_172893.1	chr9	56160948	56161148	-	1	NA	NA	NA	22	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.125000	0.711443	-80(TCCTTTAAGAGG,-,0.00),-79(CCTTTAAGAGGC,+,0.00)
mm_3210.1	chr1	135827855	135828055	+	1	NA	NA	NA	-8379	NM_001130180	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.025000	0.621891	
mm_44393.1	chr5	17830740	17830940	-	1	NA	NA	NA	5056	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.437811	-10(TCTTAAAGAGGC,+,0.00)
mm_97650.1	chr11	79450835	79451035	+	1	NA	NA	NA	33096	NR_045305	104522	Mm.436987	NR_045305	ENSMUSG00000091523	AU040972	AU040954	expressed sequence AU040972	ncRNA	0.010000	0.442786	
mm_117537.1	chr13	83575569	83575769	-	1	NA	NA	NA	2062	NM_001347569	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.035000	0.427861	
mm_150310.1	chr19	34571813	34572013	+	1	NA	NA	NA	-11616	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.000000	0.298507	
mm_115307.1	chr13	112288487	112288687	+	1	NA	NA	NA	69	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.025000	0.502488	
mm_57692.1	chr6	128521089	128521289	-	1	NA	NA	NA	5531	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.005000	0.383085	
mm_5291.1	chr1	20869853	20870053	-	1	NA	NA	NA	20520	NR_040492	77741	Mm.159984	NR_040492	ENSMUSG00000097934	6720483E21Rik	-	RIKEN cDNA 6720483E21 gene	ncRNA	0.005000	0.462687	
mm_31267.1	chr4	45320291	45320491	+	1	NA	NA	NA	212	NM_025513	66362	Mm.275788	NM_025513	ENSMUSG00000028322	Exosc3	2310005D06Rik|AI593501|Rrp40	exosome component 3	protein-coding	0.130000	0.711443	
mm_173329.1	chrY	90783798	90783998	-	1	NA	NA	NA	-1544	NR_137282	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.025000	0.681592	
mm_60760.1	chr7	45526339	45526539	+	1	NA	NA	NA	109	NM_148927	69217	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0.075000	0.517413	
mm_110744.1	chr12	69892936	69893136	-	1	NA	NA	NA	-69	NM_178628	73991	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	0.190000	0.776119	
mm_10397.1	chr2	13574209	13574409	+	1	NA	NA	NA	-2	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.055000	0.616915	-33(TGTTATAAAAGC,-,0.00)
mm_166115.1	chr4	149774193	149774393	-	1	NA	NA	NA	-26	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.175000	0.771144	
mm_81768.1	chr9	114401408	114401608	+	1	NA	NA	NA	413	NM_001200002	100504715	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	0.115000	0.716418	
mm_138130.1	chr17	34187595	34187795	+	1	NA	NA	NA	139	NM_013683	21354	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.070000	0.597015	
mm_19205.1	chr2	84513554	84513754	-	1	NA	NA	NA	-6781	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	0.005000	0.412935	-95(TTCTTTTTAAGC,-,0.00)
mm_14187.1	chr2	127080383	127080583	+	1	NA	NA	NA	9826	NM_026678	109778	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0.015000	0.457711	
mm_565.1	chr1	38035613	38035813	+	1	NA	NA	NA	37703	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.010000	0.577114	
mm_33177.1	chr4	126057852	126058052	+	1	NA	NA	NA	-613	NM_172701	230751	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	0.030000	0.467662	-36(GATTATTAAAGG,-,0.00)
mm_104544.1	chr11	96747557	96747757	-	1	NA	NA	NA	29898	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.015000	0.497512	
mm_66654.1	chr7	45712361	45712561	-	1	NA	NA	NA	2746	NM_020011	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.025000	0.582090	
mm_155698.1	chrX	94635949	94636149	+	1	NA	NA	NA	-20	NM_008179	14853	Mm.20826	NM_008179	ENSMUSG00000071723	Gspt2	-	G1 to S phase transition 2	protein-coding	0.080000	0.611940	
mm_35159.1	chr4	12562720	12562920	-	1	NA	NA	NA	-344017	NM_173746	208820	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding	0.000000	0.467662	
mm_49657.1	chr6	31123762	31123962	+	1	NA	NA	NA	-60769	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.010000	0.487562	
mm_26402.1	chr3	142603576	142603776	+	1	NA	NA	NA	8829	NM_010259	14468	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.000000	0.432836	
mm_148411.1	chr19	3933379	3933579	+	1	NA	NA	NA	-1707	NM_019449	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.005000	0.467662	
mm_21066.1	chr2	152803111	152803311	-	1	NA	NA	NA	27506	NM_001289716	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.000000	0.487562	
mm_52199.1	chr6	100670593	100670793	+	1	NA	NA	NA	464	NM_181590	72171	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	0.095000	0.656716	
mm_9116.1	chr1	170174880	170175080	-	1	NA	NA	NA	-16	NM_001305045	107652	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.090000	0.696517	
mm_117460.1	chr13	75929947	75930147	-	1	NA	NA	NA	13777	NM_028493	73296	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	0.020000	0.502488	
mm_163266.1	chr11	114741614	114741814	+	1	NA	NA	NA	8035	NR_037269	100526524		NR_037269	ENSMUSG00000077991	Mir466n	mmu-mir-466n	microRNA 466n	ncRNA	0.015000	0.487562	
mm_112473.1	chr13	5868468	5868668	+	1	NA	NA	NA	7079	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.020000	0.427861	
mm_41429.1	chr5	90893029	90893229	+	1	NA	NA	NA	1884	NM_008176	14825	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.020000	0.373134	
mm_25125.1	chr3	102085827	102086027	+	1	NA	NA	NA	-528	NM_009814	12373	Mm.15343	NM_009814	ENSMUSG00000027861	Casq2	AA033488|AW146219|Csq2|ESTM52|cCSQ	calsequestrin 2	protein-coding	0.035000	0.587065	
mm_71846.1	chr8	68905051	68905251	+	1	NA	NA	NA	24596	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.000000	0.363184	
mm_56230.1	chr6	90660235	90660435	-	1	NA	NA	NA	41089	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.005000	0.383085	79(CTCTTTTTAAAG,-,0.00),80(TCTTTTTAAAGG,-,0.00),81(CTTTTTAAAGGG,+,0.00),81(CTTTTTAAAGGG,-,0.00)
mm_55639.1	chr6	72338420	72338620	-	1	NA	NA	NA	6655	NM_138592	28035	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	0.005000	0.462687	-54(GCTTTTCTAGGC,+,0.00)
mm_98466.1	chr11	94948660	94948860	+	1	NA	NA	NA	12536	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.035000	0.606965	
mm_83568.1	chr9	46319887	46320087	-	1	NA	NA	NA	-1	NM_183104	74361	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding	0.015000	0.492537	
mm_61844.1	chr7	88290805	88291005	+	1	NA	NA	NA	12820	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.005000	0.383085	59(GCCCTTAAAGAG,-,0.00),61(CCTTAAAGAGTT,+,0.00)
mm_15193.1	chr2	154204661	154204861	+	1	NA	NA	NA	4381	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.015000	0.557214	
mm_145612.1	chr18	61105470	61105670	+	1	NA	NA	NA	-2	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.000000	0.492537	
mm_82696.1	chr9	22388993	22389193	-	1	NA	NA	NA	113	NM_028390	68743	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0.085000	0.626866	
mm_8729.1	chr1	160077835	160078035	-	1	NA	NA	NA	-17	NR_038030	75255	Mm.414845	NR_038030	ENSMUSG00000026729	4930562F07Rik	-	RIKEN cDNA 4930562F07 gene	ncRNA	0.010000	0.492537	
mm_87060.1	chr10	28843913	28844113	+	1	NA	NA	NA	79494	NR_033601	114676	Mm.390292	NR_033601		4930519F09Rik	-	pyruvate dehydrogenase E1 alpha 1 pseudogene	pseudo	0.005000	0.422886	-76(GCATTTATAGGT,+,0.00)
mm_102429.1	chr11	59472376	59472576	-	1	NA	NA	NA	-2	NM_178417	237775	Mm.339604	NM_178417	ENSMUSG00000054519	Zfp867	-	zinc finger protein 867	protein-coding	0.050000	0.517413	83(GTCCTTATGAGG,-,0.00)
mm_108039.1	chr12	73901257	73901457	+	1	NA	NA	NA	33	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.020000	0.467662	
mm_49327.1	chr6	21214787	21214987	+	1	NA	NA	NA	-1222	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.110000	0.686567	
mm_78756.1	chr9	43257307	43257507	+	1	NA	NA	NA	-2472	NM_001243261	235302	Mm.135745	NM_001243261	ENSMUSG00000095385	D630033O11Rik	Gm588	RIKEN cDNA D630033O11 gene	protein-coding	0.005000	0.507463	
mm_156005.1	chrX	106703811	106704011	+	1	NA	NA	NA	-100232	NM_001281859	58861	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	0.015000	0.412935	
mm_73992.1	chr8	120685295	120685495	+	1	NA	NA	NA	17075	NM_001293559	12857	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit IV isoform 1	protein-coding	0.015000	0.587065	
mm_124038.1	chr14	77033279	77033479	-	1	NA	NA	NA	3238	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding	0.035000	0.417910	
mm_122404.1	chr14	41004423	41004623	-	1	NA	NA	NA	2397	NM_001316739	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.040000	0.606965	
mm_27670.1	chr3	65392454	65392654	-	1	NA	NA	NA	-1	NM_026155	67437	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.095000	0.666667	
mm_138078.1	chr17	33955814	33956014	+	1	NA	NA	NA	32	NM_172620	224705	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	0.075000	0.522388	
mm_34139.1	chr4	139291512	139291712	+	1	NA	NA	NA	19088	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.010000	0.507463	
mm_50544.1	chr6	49046151	49046351	+	1	NA	NA	NA	9733	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.005000	0.412935	
mm_126545.1	chr15	82028022	82028222	+	1	NA	NA	NA	11753	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.015000	0.452736	
mm_17533.1	chr2	29744547	29744747	-	1	NA	NA	NA	-16881	NM_001177392	433416	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	OTTMUSG00000012686	predicted gene 13547	protein-coding	0.000000	0.417910	88(GTCTTTATAGTC,+,0.00)
mm_8905.1	chr1	163312432	163312632	-	1	NA	NA	NA	1118	NM_011127	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.090000	0.671642	
mm_158869.1	chrY	1245619	1245819	-	1	NA	NA	NA	40	NM_001326683	22290	Mm.20477	NM_009484	ENSMUSG00000068457	Uty	Hydb|mKIAA4057	ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	protein-coding	0.050000	0.442786	
mm_36491.1	chr4	83256677	83256877	-	1	NA	NA	NA	67412	NM_027238	69863	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.010000	0.467662	
mm_47731.1	chr5	130172255	130172455	-	1	NA	NA	NA	536	NM_001199059	56715	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.025000	0.527363	-20(TTCCATAAAAGG,-,0.00)
mm_155502.1	chrX	73786997	73787197	+	1	NA	NA	NA	-46	NM_009279	20832	Mm.831	NM_009279	ENSMUSG00000002014	Ssr4	AW743063|C78062|Trap	signal sequence receptor, delta	protein-coding	0.105000	0.666667	
mm_38805.1	chr4	148159784	148159984	-	1	NA	NA	NA	210	NM_173401	230903	Mm.220327	NM_173401	ENSMUSG00000029001	Fbxo44	5730411K09|AV001623|FBG3|FBX30|Fbx6a|Fbxo6a	F-box protein 44	protein-coding	0.050000	0.641791	
mm_37957.1	chr4	133339151	133339351	-	1	NA	NA	NA	64	NM_199306	230796	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	0.105000	0.726368	
mm_33927.1	chr4	136880311	136880511	+	1	NA	NA	NA	5766	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.025000	0.547264	
mm_21411.1	chr2	158118874	158119074	-	1	NA	NA	NA	-27177	NR_040609	72340	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0.020000	0.562189	
mm_75278.1	chr8	41006676	41006876	-	1	NA	NA	NA	-10692	NR_015457	78849	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	0.005000	0.427861	
mm_16107.1	chr2	169633216	169633416	+	1	NA	NA	NA	-330	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.045000	0.507463	
mm_89025.1	chr10	82629711	82629911	+	1	NA	NA	NA	-27	NM_011561	21665	Mm.284252	NM_011561	ENSMUSG00000034674	Tdg	E130317C12Rik|JZA-3|Jza1	thymine DNA glycosylase	protein-coding	0.130000	0.721393	-37(GCCCCGAAAAGG,-,0.00)
mm_63784.1	chr7	131966358	131966558	+	1	NA	NA	NA	-2	NM_173410	233919	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	0.015000	0.577114	
mm_107098.1	chr12	17701915	17702115	+	1	NA	NA	NA	11201	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.005000	0.442786	
mm_125535.1	chr15	58033856	58034056	+	1	NA	NA	NA	338	NM_029418	75758	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.085000	0.701493	
mm_122975.1	chr14	54975976	54976176	-	1	NA	NA	NA	-300	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.020000	0.562189	
mm_15384.1	chr2	156613379	156613579	+	1	NA	NA	NA	-57	NR_040372	100504350	Mm.94426	NR_040372	ENSMUSG00000086118	Gm14169	OTTMUSG00000015869	predicted gene 14169	ncRNA	0.135000	0.776119	
mm_53940.1	chr6	5019031	5019231	-	1	NA	NA	NA	115811	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.020000	0.502488	
mm_95532.1	chr11	52246455	52246655	+	1	NA	NA	NA	14560	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.000000	0.358209	
mm_49552.1	chr6	30512243	30512443	+	1	NA	NA	NA	57	NM_029373	75647	Mm.46117	NM_027073	ENSMUSG00000029784	Ssmem1	1700016K02Rik|1700025E21Rik	serine-rich single-pass membrane protein 1	protein-coding	0.025000	0.482587	
mm_88125.1	chr10	69246898	69247098	+	1	NA	NA	NA	33804	NM_001252638	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.015000	0.552239	
mm_141245.1	chr17	27486658	27486858	-	1	NA	NA	NA	16775	NM_001013385	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.010000	0.507463	
mm_149110.1	chr19	8953884	8954084	+	1	NA	NA	NA	152	NM_197993	70044	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	0.090000	0.577114	
mm_34315.1	chr4	141818965	141819165	+	1	NA	NA	NA	6940	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.040000	0.616915	
mm_104664.1	chr11	97629573	97629773	-	1	NA	NA	NA	43	NM_175332	103551	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0.130000	0.746269	
mm_32272.1	chr4	102625340	102625540	+	1	NA	NA	NA	35597	NM_001177981	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.000000	0.427861	
mm_155495.1	chrX	73756953	73757153	+	1	NA	NA	NA	-50	NM_019587	140571	Mm.275600	NM_019587	ENSMUSG00000031385	Plxnb3	AI451018|Plxn6	plexin B3	protein-coding	0.020000	0.641791	
mm_24522.1	chr3	92966961	92967161	+	1	NA	NA	NA	0	NM_001254725	69514	Mm.440092	NM_001254725	ENSMUSG00000074433	Lce3e	2310001H18Rik	late cornified envelope 3E	protein-coding	0.005000	0.507463	
mm_103044.1	chr11	69797069	69797269	-	1	NA	NA	NA	-1232	NM_009601	11443	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	0.005000	0.482587	
mm_164351.1	chr16	19983015	19983215	-	1	NA	NA	NA	-66	NM_183390	239743	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.010000	0.492537	
mm_101741.1	chr11	43379068	43379268	-	1	NA	NA	NA	-4707	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.005000	0.343284	
mm_132775.1	chr16	44774509	44774709	+	1	NA	NA	NA	8873	NM_021325	57781	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.020000	0.323383	
mm_163577.1	chr13	33078417	33078617	+	1	NA	NA	NA	-5586	NM_173052	282663	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	0.005000	0.487562	
mm_80720.1	chr9	92275801	92276001	+	1	NA	NA	NA	299	NM_001195084	18828	Mm.10306	NM_008880	ENSMUSG00000032372	Plscr2	-	phospholipid scramblase 2	protein-coding	0.015000	0.472637	
mm_88653.1	chr10	79994927	79995127	+	1	NA	NA	NA	-2581	NM_001347081	27403	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.010000	0.437811	28(GCTTTAAAATAC,+,0.00)
mm_127433.1	chr15	101270065	101270265	+	1	NA	NA	NA	3319	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.040000	0.606965	
mm_104801.1	chr11	98774966	98775166	-	1	NA	NA	NA	311	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.020000	0.537313	
mm_18638.1	chr2	69405757	69405957	-	1	NA	NA	NA	25395	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.015000	0.462687	
mm_13052.1	chr2	91099703	91099903	+	1	NA	NA	NA	3125	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.005000	0.323383	-62(GACTTTAAAAAA,-,0.00)
mm_105532.1	chr11	106301043	106301243	-	1	NA	NA	NA	753	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.030000	0.592040	
mm_102424.1	chr11	59421528	59421728	-	1	NA	NA	NA	28328	NM_144521	67826	Mm.26680	NM_144521	ENSMUSG00000009894	Snap47	1110031B06Rik|SNAP-47	synaptosomal-associated protein, 47	protein-coding	0.025000	0.567164	
mm_90992.1	chr10	13966657	13966857	-	1	NA	NA	NA	378	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.090000	0.641791	
mm_99947.1	chr11	111075338	111075538	+	1	NA	NA	NA	9274	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.010000	0.368159	29(GCTTAAAAAGAA,+,0.00)
mm_170515.1	chr19	29367389	29367589	+	1	NA	NA	NA	51	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.065000	0.587065	55(CACTTTAAAGAG,-,0.00),57(CTTTAAAGAGCC,+,0.00)
mm_12130.1	chr2	61649992	61650192	+	1	NA	NA	NA	56995	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.015000	0.412935	
mm_81376.1	chr9	108855434	108855634	+	1	NA	NA	NA	1491	NM_134420	171429	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.015000	0.577114	
mm_121394.1	chr14	119137588	119137788	+	1	NA	NA	NA	-577	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.090000	0.691542	
mm_130861.1	chr15	102188918	102189118	-	1	NA	NA	NA	25	NM_144942	246277	Mm.296382	NM_144942	ENSMUSG00000023044	Csad	Csd	cysteine sulfinic acid decarboxylase	protein-coding	0.020000	0.507463	
mm_89448.1	chr10	93124476	93124676	+	1	NA	NA	NA	-36300	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.025000	0.442786	70(CCTTTAAAATGC,+,0.00)
mm_84097.1	chr9	58249567	58249767	-	1	NA	NA	NA	119	NM_178087	18854	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	0.035000	0.567164	
mm_67785.1	chr7	97420869	97421069	-	1	NA	NA	NA	-3419	NM_009381	21835	Mm.28585	NM_009381	ENSMUSG00000035686	Thrsp	S14|SPOT14	thyroid hormone responsive	protein-coding	0.005000	0.502488	
mm_137266.1	chr17	24696198	24696398	+	1	NA	NA	NA	64	NM_027988	71893	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	0.145000	0.815920	
mm_100666.1	chr11	3332165	3332365	-	1	NA	NA	NA	1534	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.135000	0.721393	
mm_99275.1	chr11	101260455	101260655	+	1	NA	NA	NA	-12	NM_175638	69847	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	0.085000	0.746269	
mm_24751.1	chr3	95320085	95320285	+	1	NA	NA	NA	1355	NM_001320492	76893	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.020000	0.502488	
mm_6538.1	chr1	74951344	74951544	-	1	NA	NA	NA	228	NM_001313683	16147	Mm.439736	NM_010544	ENSMUSG00000006538	Ihh	HHG-2	Indian hedgehog	protein-coding	0.150000	0.781095	
mm_107840.1	chr12	69296868	69297068	+	1	NA	NA	NA	287	NM_027117	69554	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0.125000	0.696517	
mm_147485.1	chr18	47275660	47275860	-	1	NA	NA	NA	93108	NM_018744	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.005000	0.412935	
mm_108434.1	chr12	82256481	82256681	+	1	NA	NA	NA	-54768	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.000000	0.417910	
mm_105844.1	chr11	113684093	113684293	-	1	NA	NA	NA	-42	NM_138598	28081	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0.100000	0.621891	
mm_38088.1	chr4	134186899	134187099	-	1	NA	NA	NA	86	NM_144527	70012	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	0.135000	0.701493	
mm_152304.1	chr19	9087854	9088054	-	1	NA	NA	NA	2	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.010000	0.477612	
mm_113014.1	chr13	21945012	21945212	+	1	NA	NA	NA	18	NM_183014	193452	Mm.187446	NM_183014	ENSMUSG00000006720	Zfp184	4930500C15Rik	zinc finger protein 184 (Kruppel-like)	protein-coding	0.060000	0.592040	
mm_105433.1	chr11	104301260	104301460	-	1	NA	NA	NA	69924	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.025000	0.492537	
mm_23963.1	chr3	84952331	84952531	+	1	NA	NA	NA	220	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.055000	0.542289	32(CCTTTTCTGGCG,+,0.00)
mm_137893.1	chr17	31681068	31681268	+	1	NA	NA	NA	3237	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.025000	0.631841	
mm_9627.1	chr1	176808880	176809080	-	1	NA	NA	NA	-1856	NM_001099637	545389	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	0.005000	0.368159	
mm_21666.1	chr2	164425274	164425474	-	1	NA	NA	NA	17814	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.020000	0.422886	-29(GTTTTTAAATGG,-,0.00)
mm_12736.1	chr2	78872310	78872510	+	1	NA	NA	NA	3363	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.010000	0.432836	
mm_130842.1	chr15	101892819	101893019	-	1	NA	NA	NA	1	NM_001033177	77055	Mm.195788	NM_001033177	ENSMUSG00000075402	Krt76	2310001L23Rik	keratin 76	protein-coding	0.015000	0.527363	-33(GGATATAAAGGC,-,0.00)
mm_57556.1	chr6	126921696	126921896	-	1	NA	NA	NA	43	NM_207210	101320	Mm.44896	NM_207210	ENSMUSG00000030345	Dyrk4	AW049118|Dyrk4a|Dyrk4b	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4	protein-coding	0.045000	0.601990	
mm_36862.1	chr4	106947807	106948007	-	1	NA	NA	NA	36437	NM_023672	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.015000	0.507463	
mm_98072.1	chr11	86201335	86201535	+	1	NA	NA	NA	75	NR_130958	74038	Mm.171304	NR_130958	ENSMUSG00000085208	Brip1os	4632419I22Rik	BRCA1 interacting protein C-terminal helicase 1, opposite strand	ncRNA	0.060000	0.522388	6(GACTTTAAGAAG,-,0.00)
mm_68129.1	chr7	102210039	102210239	-	1	NA	NA	NA	27	NM_001287166	269966	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	0.170000	0.766169	
mm_11730.1	chr2	37452123	37452323	+	1	NA	NA	NA	-31	NM_001033960	227800	Mm.383192	NM_146121	ENSMUSG00000035437	Rabgap1	Gapcena|mKIAA4104	RAB GTPase activating protein 1	protein-coding	0.110000	0.756219	
mm_22898.1	chr3	30800999	30801199	+	1	NA	NA	NA	8223	NM_027016	69276	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	0.020000	0.402985	
mm_26579.1	chr3	147389647	147389847	+	1	NA	NA	NA	537380	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.005000	0.457711	
mm_160299.1	chr7	134938134	134938334	-	1	NA	NA	NA	196	NM_001143802	627214	Mm.323610	NM_001143802	ENSMUSG00000073805	Fam196a	B830028B13Rik	family with sequence similarity 196, member A	protein-coding	0.105000	0.781095	
mm_113324.1	chr13	30786414	30786614	+	1	NA	NA	NA	37281	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.010000	0.577114	
mm_14681.1	chr2	139678559	139678759	+	1	NA	NA	NA	481	NM_001276489	319909	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1, angiogenesis inhibitor	protein-coding	0.135000	0.736318	
mm_36209.1	chr4	62434630	62434830	-	1	NA	NA	NA	-4	NM_153504	76072	Mm.169565	NM_153504	ENSMUSG00000063851	Rnf183	5830442J12Rik	ring finger protein 183	protein-coding	0.000000	0.507463	
mm_16870.1	chr2	12301799	12301999	-	1	NA	NA	NA	45	NR_138462	241226	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0.095000	0.726368	
mm_94077.1	chr10	128410449	128410649	-	1	NA	NA	NA	-753	NM_027257	69917	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	0.040000	0.497512	
mm_146730.1	chr18	15312613	15312813	-	1	NA	NA	NA	90286	NM_001308647	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.020000	0.577114	
mm_3513.1	chr1	150107288	150107488	+	1	NA	NA	NA	7357	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.000000	0.288557	
mm_63428.1	chr7	127478422	127478622	+	1	NA	NA	NA	-6699	NM_010183	14123	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.050000	0.572139	-38(CTCCTTAAAGGG,-,0.00),-36(CCTTAAAGGGGT,+,0.00),4(CAGTCTTAAAGG,-,0.00)
mm_3076.1	chr1	134289906	134290106	+	1	NA	NA	NA	2	NM_031189	17928	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	0.015000	0.557214	-33(GGGTTTAAATGG,-,0.00)
mm_162624.1	chr1	183420275	183420475	-	1	NA	NA	NA	1127	NM_001308052	78772	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0.030000	0.557214	
mm_103761.1	chr11	81153523	81153723	-	1	NA	NA	NA	-720	NM_007384	11418	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	0.145000	0.781095	
mm_100268.1	chr11	117523435	117523635	+	1	NA	NA	NA	39167	NR_130966	432615	Mm.126359	NR_130966	ENSMUSG00000069588	Gm11733	OTTMUSG00000003802	predicted gene 11733	ncRNA	0.005000	0.552239	
mm_117039.1	chr13	58291588	58291788	-	1	NA	NA	NA	-17500	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.005000	0.393035	
mm_48801.1	chr5	148955660	148955860	-	1	NA	NA	NA	5510	NR_040686	71473	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	0.015000	0.552239	
mm_51638.1	chr6	85915693	85915893	+	1	NA	NA	NA	74	NM_001170488	69786	Mm.218434	NM_176842	ENSMUSG00000054226	Tprkb	0610033G21Rik|1810034M08Rik|Cgi-121|DRWMS1|mDRWMS1	Tp53rk binding protein	protein-coding	0.090000	0.592040	
mm_91563.1	chr10	40025112	40025312	-	1	NA	NA	NA	56	NM_144821	215929	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.050000	0.626866	
mm_167417.1	chr8	109961976	109962176	-	1	NA	NA	NA	129	NM_212447	73608	Mm.86833	NM_028584	ENSMUSG00000001672	Marveld3	1810006A16Rik|AI642133|Marvd3|Mrvldc3	MARVEL (membrane-associating) domain containing 3	protein-coding	0.115000	0.666667	
mm_7133.1	chr1	91052793	91052993	-	1	NA	NA	NA	-551	NM_001310732	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.075000	0.671642	
mm_86531.1	chr10	7832374	7832574	+	1	NA	NA	NA	4	NM_172785	237256	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	0.015000	0.626866	
mm_14721.1	chr2	143989703	143989903	+	1	NA	NA	NA	21460	NM_133626	81910	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.000000	0.512438	
mm_63316.1	chr7	126897490	126897690	+	1	NA	NA	NA	688	NM_026827	68742	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0.020000	0.502488	
mm_38021.1	chr4	133756430	133756630	-	1	NA	NA	NA	-2919	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.035000	0.532338	
mm_160008.1	chr6	124808479	124808679	+	1	NA	NA	NA	-82	NM_001306051	14794	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.020000	0.532338	
mm_19311.1	chr2	90542713	90542913	-	1	NA	NA	NA	37834	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.005000	0.462687	
mm_141091.1	chr17	25979843	25980043	-	1	NA	NA	NA	5931	NM_001347334	50817	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	0.000000	0.507463	
mm_98018.1	chr11	84901038	84901238	+	1	NA	NA	NA	15218	NM_001005223	448850	Mm.379733	NM_001005223	ENSMUSG00000020526	Znhit3	Myohd1|Trip3	zinc finger, HIT type 3	protein-coding	0.010000	0.497512	
mm_45155.1	chr5	49473235	49473435	-	1	NA	NA	NA	-187676	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.005000	0.378109	
mm_66847.1	chr7	49636749	49636949	-	1	NA	NA	NA	-14	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.050000	0.582090	
mm_100527.1	chr11	120598442	120598642	+	1	NA	NA	NA	10	NM_001038230	66156	Mm.21645	NM_025389	ENSMUSG00000025135	Anapc11	1110011I19Rik|R75218	anaphase promoting complex subunit 11	protein-coding	0.175000	0.736318	
mm_7940.1	chr1	133914676	133914876	-	1	NA	NA	NA	6625	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.035000	0.577114	
mm_28973.1	chr3	101029429	101029629	-	1	NA	NA	NA	-34	NM_001167906	630146	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0.015000	0.477612	
mm_136246.1	chr16	90937082	90937282	-	1	NA	NA	NA	-2333	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.005000	0.358209	
mm_52022.1	chr6	94681673	94681873	+	1	NA	NA	NA	18372	NM_008377	16206	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.025000	0.477612	
mm_143503.1	chr17	71598610	71598810	-	1	NA	NA	NA	51	NR_015549	68789	Mm.75202	NR_015549	ENSMUSG00000085492	Trmt61b	1110039F03Rik|623451|Gm6431	tRNA methyltransferase 61B	ncRNA	0.090000	0.611940	
mm_101654.1	chr11	36671953	36672153	-	1	NA	NA	NA	272188	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.020000	0.363184	
mm_107435.1	chr12	36020437	36020637	+	1	NA	NA	NA	21941	NM_025359	66109	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0.025000	0.462687	
mm_11284.1	chr2	30066453	30066653	+	1	NA	NA	NA	79	NM_001204875	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.125000	0.766169	
mm_20289.1	chr2	126926755	126926955	-	1	NA	NA	NA	6380	NM_023220	66552	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	0.010000	0.487562	
mm_39322.1	chr5	8422769	8422969	+	1	NA	NA	NA	31	NM_178766	319653	Mm.146262	NM_178766	ENSMUSG00000054099	Slc25a40	B230315F11Rik	solute carrier family 25, member 40	protein-coding	0.135000	0.786070	
mm_58350.1	chr6	147264038	147264238	-	1	NA	NA	NA	-125	NM_008970	19227	Mm.28440	NM_008970	ENSMUSG00000048776	Pthlh	PLP|PTH-like|Pthrp	parathyroid hormone-like peptide	protein-coding	0.100000	0.736318	
mm_93740.1	chr10	120142665	120142865	-	1	NA	NA	NA	-29800	NM_080446	117599	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.015000	0.482587	
mm_54219.1	chr6	25809151	25809351	-	1	NA	NA	NA	-25	NM_133931	101185	Mm.274589	NM_133931	ENSMUSG00000029676	Pot1a	1500031H18Rik|AI851169|Pot1	protection of telomeres 1A	protein-coding	0.080000	0.587065	
mm_132805.1	chr16	45158755	45158955	+	1	NA	NA	NA	26	NM_026402	67841	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	0.075000	0.696517	
mm_165292.1	chr2	91096589	91096789	+	1	NA	NA	NA	11	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.025000	0.606965	
mm_27968.1	chr3	80691042	80691242	-	1	NA	NA	NA	111649	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.000000	0.487562	
mm_158772.1	chrX	166618590	166618790	-	1	NA	NA	NA	-32974	NM_019397	54156	Mm.37707	NM_019397	ENSMUSG00000000402	Egfl6	Maeg	EGF-like-domain, multiple 6	protein-coding	0.010000	0.472637	-52(TTCCATAAAAGA,-,0.00)
mm_124609.1	chr15	3279307	3279507	+	1	NA	NA	NA	8430	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.015000	0.567164	
mm_83470.1	chr9	45545318	45545518	-	1	NA	NA	NA	-114186	NR_040732	74602	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.005000	0.497512	
mm_64401.1	chr7	142502624	142502824	+	1	NA	NA	NA	3888	NM_001347551	21957	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	0.005000	0.452736	
mm_37666.1	chr4	129111883	129112083	-	1	NA	NA	NA	6435	NM_001290706	66260	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.005000	0.527363	
mm_160658.1	chr9	119032766	119032966	+	1	NA	NA	NA	1070	NR_029742	387218		NR_029742	ENSMUSG00000065513	Mir26a-1	Mirn26a|Mirn26a-1|miR-26a|mir-26a-1	microRNA 26a-1	ncRNA	0.010000	0.477612	
mm_97717.1	chr11	80208938	80209138	+	1	NA	NA	NA	-17	NM_001163354	59040	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	0.135000	0.706468	
mm_11483.1	chr2	32387019	32387219	+	1	NA	NA	NA	620	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.030000	0.547264	
mm_26983.1	chr3	25672556	25672756	-	1	NA	NA	NA	480651	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.015000	0.358209	
mm_116447.1	chr13	43159465	43159665	-	1	NA	NA	NA	11936	NM_001252639	67046	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	0.005000	0.527363	
mm_1380.1	chr1	66816038	66816238	+	1	NA	NA	NA	1457	NM_177645	68691	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.035000	0.447761	-33(CTCTTTTAAGGC,-,0.00),-32(TCTTTTAAGGCA,+,0.00)
mm_131337.1	chr16	13358348	13358548	+	1	NA	NA	NA	27	NM_153588	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.020000	0.547264	
mm_27575.1	chr3	58692334	58692534	-	1	NA	NA	NA	-46	NM_009174	20439	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	seven in absentia 2	protein-coding	0.120000	0.736318	
mm_24013.1	chr3	87435676	87435876	+	1	NA	NA	NA	-6	NM_183222	329693	Mm.331122	NM_183222	ENSMUSG00000048031	Fcrl5	Fcrh3|mBXMH2	Fc receptor-like 5	protein-coding	0.010000	0.402985	
mm_101294.1	chr11	22138706	22138906	-	1	NA	NA	NA	-137155	NM_011023	18423	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.000000	0.353234	
mm_136726.1	chr17	8238234	8238434	+	1	NA	NA	NA	2291	NM_001190333	12458	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	0.020000	0.487562	
mm_19924.1	chr2	116058694	116058894	-	1	NA	NA	NA	5825	NM_001346044	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.020000	0.437811	-51(CCCTTTAAAAAA,-,0.00)
mm_95456.1	chr11	50376955	50377155	+	1	NA	NA	NA	-664	NM_021510	59013	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.090000	0.676617	
mm_97469.1	chr11	78297231	78297431	+	1	NA	NA	NA	-4260	NM_017407	54141	Mm.24250	NM_017407	ENSMUSG00000002055	Spag5	AI874642|D11Bhm180e|Deepest|MAP126|Mastrin|S17	sperm associated antigen 5	protein-coding	0.020000	0.477612	
mm_16849.1	chr2	11603130	11603330	-	1	NA	NA	NA	-31	NM_152824	76938	Mm.182769	NM_152824	ENSMUSG00000037197	Rbm17	2700027J02Rik	RNA binding motif protein 17	protein-coding	0.140000	0.736318	
mm_34058.1	chr4	138425639	138425839	+	1	NA	NA	NA	-8933	NM_026689	68350	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	0.060000	0.527363	
mm_32844.1	chr4	117849248	117849448	+	1	NA	NA	NA	14090	NM_008135	14664	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	0.050000	0.631841	
mm_13073.1	chr2	91119786	91119986	+	1	NA	NA	NA	1742	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.015000	0.522388	
mm_14090.1	chr2	125158329	125158529	+	1	NA	NA	NA	5829	NM_001079690	20495	Mm.3914	NM_011389	ENSMUSG00000027202	Slc12a1	AI788571|D630042G03Rik|Nkcc2|mBSC1|urehr3	solute carrier family 12, member 1	protein-coding	0.000000	0.373134	
mm_76476.1	chr8	85432751	85432951	-	1	NA	NA	NA	-10	NM_025722	66714	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	0.140000	0.751244	
mm_104739.1	chr11	98399510	98399710	-	1	NA	NA	NA	880	NM_001033537	320655	Mm.86519	NM_001033537	ENSMUSG00000038208	Pgap3	CAB2|D430035D22Rik|Perld1	post-GPI attachment to proteins 3	protein-coding	0.020000	0.487562	
mm_70232.1	chr7	145288969	145289169	-	1	NA	NA	NA	-5058	NR_132642	233979	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.010000	0.597015	
mm_169591.1	chr1	52939411	52939611	+	1	NA	NA	NA	13329	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.035000	0.497512	
mm_137980.1	chr17	33587242	33587442	+	1	NA	NA	NA	31635	NM_053214	17916	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0.000000	0.477612	-39(GGCTATATAGGG,-,0.00)
mm_83214.1	chr9	42097923	42098123	-	1	NA	NA	NA	26266	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.015000	0.577114	
mm_145810.1	chr18	65414891	65415091	+	1	NA	NA	NA	-16006	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.015000	0.497512	
mm_100982.1	chr11	7213318	7213518	-	1	NA	NA	NA	505	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding	0.095000	0.711443	
mm_107315.1	chr12	31265361	31265561	+	1	NA	NA	NA	167	NM_008482	16777	Mm.172674	NM_008482	ENSMUSG00000002900	Lamb1	C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1	laminin B1	protein-coding	0.060000	0.621891	
mm_28634.1	chr3	95217609	95217809	-	1	NA	NA	NA	233	NM_172512	213054	Mm.224820	NM_029885	ENSMUSG00000038766	Gabpb2	1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1	GA repeat binding protein, beta 2	protein-coding	0.055000	0.552239	
mm_167659.1	chr9	71165240	71165440	+	1	NA	NA	NA	-2051	NM_022026	64008	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.000000	0.462687	-31(ACCTATAAAAGA,-,0.00)
mm_55739.1	chr6	77477913	77478113	-	1	NA	NA	NA	-95538	NR_045141	70753	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	0.005000	0.333333	
mm_89572.1	chr10	95515039	95515239	+	1	NA	NA	NA	-23	NM_080560	93765	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.110000	0.671642	
mm_75428.1	chr8	47267841	47268041	-	1	NA	NA	NA	21461	NM_001286376	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.010000	0.348259	
mm_127257.1	chr15	99704015	99704215	+	1	NA	NA	NA	1828	NM_031842	83797	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.025000	0.572139	
mm_126116.1	chr15	78261258	78261458	+	1	NA	NA	NA	16547	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.015000	0.452736	
mm_153523.1	chr19	41774037	41774237	-	1	NA	NA	NA	27176	NR_040320	100502871	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	0.010000	0.427861	
mm_108150.1	chr12	76307005	76307205	+	1	NA	NA	NA	-17786	NM_001101471	238276	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.015000	0.512438	
mm_169659.1	chr15	58134763	58134963	-	1	NA	NA	NA	219	NM_027435	70472	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0.095000	0.696517	
mm_34930.1	chr4	155839580	155839780	+	1	NA	NA	NA	0	NM_024263	74761	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	0.035000	0.656716	
mm_139735.1	chr17	57769091	57769291	+	1	NA	NA	NA	-379	NM_001081653	620292	Mm.391030	NM_001081653	ENSMUSG00000038048	Cntnap5c	Caspr5-3|EG620292|Gm325	contactin associated protein-like 5C	protein-coding	0.045000	0.587065	
mm_6793.1	chr1	84146688	84146888	-	1	NA	NA	NA	72173	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.393035	-99(GCTTTTATGTTG,+,0.00)
mm_10258.1	chr2	9368946	9369146	+	1	NA	NA	NA	179531	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.005000	0.467662	
mm_12921.1	chr2	84958764	84958964	+	1	NA	NA	NA	-21597	NM_008920	19074	Mm.142727	NM_008920	ENSMUSG00000027073	Prg2	EMBP|MBP|mMBP|mMBP-1	proteoglycan 2, bone marrow	protein-coding	0.030000	0.487562	
mm_18975.1	chr2	76843519	76843719	-	1	NA	NA	NA	138928	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.005000	0.313433	
mm_87271.1	chr10	41809906	41810106	+	1	NA	NA	NA	-138	NM_026643	103268	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	0.115000	0.736318	
mm_132850.1	chr16	46958779	46958979	+	1	NA	NA	NA	-461912	NM_021497	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.000000	0.388060	77(TCCTTTATAAGC,-,0.00),79(CTTTATAAGCCC,+,0.00)
mm_167104.1	chr7	111080220	111080420	-	1	NA	NA	NA	2710	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.035000	0.422886	
mm_33279.1	chr4	128727517	128727717	+	1	NA	NA	NA	46	NM_001195083	54383	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic-like 2 (Drosophila)	protein-coding	0.190000	0.835821	
mm_95189.1	chr11	42421228	42421428	+	1	NA	NA	NA	-22	NM_001347314	14401	Mm.338723	NM_008070	ENSMUSG00000007653	Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding	0.035000	0.502488	
mm_126607.1	chr15	82642088	82642288	+	1	NA	NA	NA	-143	NR_003552	68444	Mm.443212	NR_003552		Cyp2d13	1300007K12Rik	cytochrome P450, family 2, subfamily d, polypeptide 13	pseudo	0.005000	0.462687	
mm_19106.1	chr2	79454869	79455069	-	1	NA	NA	NA	1667	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.035000	0.547264	
mm_129853.1	chr15	83172143	83172343	-	1	NA	NA	NA	-35	NM_029787	109754	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.105000	0.691542	
mm_8653.1	chr1	156462135	156462335	-	1	NA	NA	NA	12093	NM_009230	20652	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0.000000	0.383085	
mm_155214.1	chrX	56787707	56787907	+	1	NA	NA	NA	1280	NM_001287800	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.005000	0.467662	42(GCTTAAATGGAA,+,0.00)
mm_115666.1	chr13	12473436	12473636	-	1	NA	NA	NA	-11798	NM_001291057	56048	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.010000	0.393035	
mm_90723.1	chr10	5068962	5069162	-	1	NA	NA	NA	1	NM_022027	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.005000	0.477612	76(GCCTAGATAAGG,-,0.00)
mm_83975.1	chr9	57261879	57262079	-	1	NA	NA	NA	620	NM_028820	74211	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.065000	0.691542	
mm_31398.1	chr4	48045229	48045429	+	1	NA	NA	NA	24	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.115000	0.701493	
mm_72360.1	chr8	80493949	80494149	+	1	NA	NA	NA	4	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.020000	0.462687	
mm_23705.1	chr3	68786921	68787121	+	1	NA	NA	NA	-82565	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.000000	0.467662	
mm_7651.1	chr1	128324225	128324425	-	1	NA	NA	NA	3993	NM_001081078	226413	Mm.26930	NM_001081078	ENSMUSG00000026354	Lct	Gm100|LAC|LPH|Lphl	lactase	protein-coding	0.010000	0.432836	
mm_94614.1	chr11	16752128	16752328	+	1	NA	NA	NA	25	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.065000	0.651741	
mm_83170.1	chr9	40531225	40531425	-	1	NA	NA	NA	-75561	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.095000	0.666667	
mm_1602.1	chr1	74380810	74381010	+	1	NA	NA	NA	5707	NM_013612	18173	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.025000	0.611940	
mm_21816.1	chr2	165283570	165283770	-	1	NA	NA	NA	4117	NM_001252574	228875	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.015000	0.552239	
mm_134059.1	chr16	7038418	7038618	-	1	NA	NA	NA	-31317	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.020000	0.353234	
mm_101305.1	chr11	22610238	22610438	-	1	NA	NA	NA	98055	NM_153596	103765	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.010000	0.542289	
mm_87335.1	chr10	43221417	43221617	+	1	NA	NA	NA	31	NM_001168289	71365	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding	0.055000	0.572139	
mm_101908.1	chr11	49590238	49590438	-	1	NA	NA	NA	-19341	NM_008029	14257	Mm.3291	NM_008029	ENSMUSG00000020357	Flt4	AI323512|Chy|Flt-4|VEGFR-3|VEGFR3	FMS-like tyrosine kinase 4	protein-coding	0.055000	0.547264	
mm_10852.1	chr2	24994290	24994490	+	1	NA	NA	NA	18357	NM_146251	241274	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0.000000	0.487562	
mm_18706.1	chr2	71868216	71868416	-	1	NA	NA	NA	-4908	NM_172665	228026	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.000000	0.417910	
mm_132816.1	chr16	45201628	45201828	+	1	NA	NA	NA	-22609	NM_001037719	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.000000	0.348259	
mm_73986.1	chr8	120628626	120628826	+	1	NA	NA	NA	5656	NM_197988	68918	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0.000000	0.547264	
mm_58854.1	chr7	16886347	16886547	+	1	NA	NA	NA	-5339	NM_010320	14709	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	0.045000	0.552239	
mm_126097.1	chr15	78044042	78044242	+	1	NA	NA	NA	-73318	NM_018749	55944	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	0.020000	0.527363	
mm_127507.1	chr15	101469348	101469548	+	1	NA	NA	NA	-4030	NM_010667	16679	Mm.383183	NM_010667	ENSMUSG00000067614	Krt86	5430421N21Rik|AI325212|Khb4|Krt2-10|Krt2-11|MHb4	keratin 86	protein-coding	0.005000	0.527363	
mm_140025.1	chr17	73948333	73948533	+	1	NA	NA	NA	1763	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.005000	0.462687	
mm_151396.1	chr19	56441134	56441334	+	1	NA	NA	NA	-20403	NM_001164263	226245	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	0.015000	0.328358	
mm_98677.1	chr11	96284679	96284879	+	1	NA	NA	NA	-1867	NM_010460	15415	Mm.390366	NM_010460	ENSMUSG00000038721	Hoxb7	AI325018|Hox-2.3	homeobox B7	protein-coding	0.050000	0.542289	
mm_141328.1	chr17	28467174	28467374	-	1	NA	NA	NA	18875	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.000000	0.388060	
mm_116185.1	chr13	31077358	31077558	-	1	NA	NA	NA	-103411	NM_025588	66482	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.015000	0.522388	
mm_111148.1	chr12	82170495	82170695	-	1	NA	NA	NA	579	NM_001167983	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.030000	0.512438	-69(GCCTTTAAGGTC,+,0.00),-23(GTTCTTTAAAGG,-,0.00)
mm_113295.1	chr13	30614817	30615017	+	1	NA	NA	NA	-126	NR_045975	75090	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0.005000	0.477612	
mm_77119.1	chr8	111259107	111259307	-	1	NA	NA	NA	-5	NM_009149	20340	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0.135000	0.701493	
mm_127495.1	chr15	101410974	101411174	+	1	NA	NA	NA	-1329	NM_033073	110310	Mm.486285	NM_033073	ENSMUSG00000023039	Krt7	D15Wsu77e|K7|Krt2-7	keratin 7	protein-coding	0.010000	0.577114	
mm_36966.1	chr4	109374841	109375041	-	1	NA	NA	NA	31316	NR_131195	102635290	Mm.427859	NR_131195		Ttc39aos1	Gm12750|OTTMUSG00000008290|lincRNA-EPS	Ttc39a opposite strand RNA 1	ncRNA	0.040000	0.462687	
mm_107250.1	chr12	27339266	27339466	+	1	NA	NA	NA	3352	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.115000	0.582090	
mm_95807.1	chr11	55110070	55110270	+	1	NA	NA	NA	12185	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.010000	0.442786	
mm_54814.1	chr6	42349576	42349776	-	1	NA	NA	NA	-152	NM_011777	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.060000	0.661692	
mm_68971.1	chr7	126584728	126584928	-	1	NA	NA	NA	-180	NM_138310	171504	Mm.170665	NM_138310	ENSMUSG00000042759	Apobr	Apob-48r|Apob48r	apolipoprotein B receptor	protein-coding	0.010000	0.557214	56(GGCCAGAAAGGG,-,0.00)
mm_90932.1	chr10	12869011	12869211	-	1	NA	NA	NA	-7376	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.100000	0.701493	
mm_61575.1	chr7	79811144	79811344	+	1	NA	NA	NA	517	NM_008589	17293	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0.125000	0.721393	
mm_51705.1	chr6	86668714	86668914	+	1	NA	NA	NA	345	NM_010751	17119	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.125000	0.746269	
mm_105563.1	chr11	106514139	106514339	-	1	NA	NA	NA	13248	NR_030703	100216537		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.000000	0.407960	-89(ATCTATAAAGGG,-,0.00),-64(GCCTCTAAAAGT,-,0.00)
mm_90172.1	chr10	119548650	119548850	+	1	NA	NA	NA	94716	NM_001277293	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding	0.015000	0.313433	
mm_162009.1	chr19	42078837	42079037	-	1	NA	NA	NA	7433	NM_198108	226123	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	0.025000	0.512438	
mm_39469.1	chr5	19766647	19766847	+	1	NA	NA	NA	-140771	NM_001170745	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.015000	0.572139	
mm_117975.1	chr13	100067820	100068020	-	1	NA	NA	NA	36150	NM_001081061	544971	Mm.288546	NM_001081061	ENSMUSG00000049658	Bdp1	AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding	0.010000	0.353234	-69(CCCTTTAGACCG,+,0.00)
mm_105341.1	chr11	102994923	102995123	-	1	NA	NA	NA	4898	NR_105896	102466988		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.075000	0.651741	
mm_132376.1	chr16	34921303	34921503	+	1	NA	NA	NA	17926	NR_040536	76649	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.020000	0.472637	-58(ACCCTTATAAGG,-,0.00),-56(CCTTATAAGGCT,+,0.00)
mm_34155.1	chr4	139399646	139399846	+	1	NA	NA	NA	19087	NM_001160319	69116	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0.020000	0.492537	
mm_123513.1	chr14	66244022	66244222	-	1	NA	NA	NA	-30570	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.010000	0.487562	
mm_59892.1	chr7	30307058	30307258	+	1	NA	NA	NA	-1595	NM_198027	233065	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	0.005000	0.497512	
mm_69807.1	chr7	141215588	141215788	-	1	NA	NA	NA	-172	NM_025886	66985	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	0.075000	0.656716	
mm_156693.1	chrX	159459107	159459307	+	1	NA	NA	NA	82	NM_001313753	78283	Mm.160079	NM_001081124	ENSMUSG00000041020	Map7d2	1600028E09Rik|2900002G04Rik|5330432J06Rik|C030036K04Rik|Mtap7d2	MAP7 domain containing 2	protein-coding	0.000000	0.547264	
mm_19169.1	chr2	84342508	84342708	-	1	NA	NA	NA	82658	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.000000	0.398010	
mm_127128.1	chr15	98131186	98131386	+	1	NA	NA	NA	14416	NM_030121	78541	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0.015000	0.517413	
mm_149978.1	chr19	29101313	29101513	+	1	NA	NA	NA	38	NM_021525	59028	Mm.28630	NM_021525	ENSMUSG00000024785	Rcl1	2310040A02Rik|AI789745|C76567|RPCL1|Rnac	RNA terminal phosphate cyclase-like 1	protein-coding	0.125000	0.756219	
mm_93470.1	chr10	111157273	111157473	-	1	NA	NA	NA	-7429	NM_001003717	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.030000	0.442786	
mm_164511.1	chr16	95454908	95455108	+	1	NA	NA	NA	4340	NM_001302154	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	0.015000	0.497512	
mm_173295.1	chrY	40031463	40031663	-	1	NA	NA	NA	2073743	NM_207162	382133	Mm.463885	NM_207162	ENSMUSG00000094575	Gm20738	-	predicted gene, 20738	protein-coding	0.020000	0.472637	-32(TCCTTTAAAAGC,-,0.00),-31(CCTTTAAAAGCT,+,0.00)
mm_5562.1	chr1	38836481	38836681	-	1	NA	NA	NA	-15366	NM_001029878	381338	Mm.487137	NM_028403	ENSMUSG00000048814	Lonrf2	2900060P06Rik|AI851349	LON peptidase N-terminal domain and ring finger 2	protein-coding	0.165000	0.771144	
mm_35907.1	chr4	49682281	49682481	-	1	NA	NA	NA	-398	NM_001004025	19059	Mm.46125	NM_001004025	ENSMUSG00000028310	Ppp3r2	CaNB2|CnB2	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)	protein-coding	0.005000	0.467662	
mm_97609.1	chr11	78951019	78951219	+	1	NA	NA	NA	25828	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.567164	
mm_77489.1	chr8	122568258	122568458	-	1	NA	NA	NA	343	NM_026014	67177	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0.065000	0.656716	
mm_64276.1	chr7	141808499	141808699	+	1	NA	NA	NA	19588	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.005000	0.522388	
mm_2869.1	chr1	131750390	131750590	+	1	NA	NA	NA	6468	NM_177243	320718	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	0.025000	0.552239	
mm_1341.1	chr1	66175142	66175342	+	1	NA	NA	NA	-87	NM_008632	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.150000	0.810945	
mm_48281.1	chr5	138171131	138171331	-	1	NA	NA	NA	631	NM_008568	17220	Mm.378965	NM_008568	ENSMUSG00000029730	Mcm7	AI747533|Mcmd7|mCDC47	minichromosome maintenance complex component 7	protein-coding	0.105000	0.626866	
mm_32443.1	chr4	107262294	107262494	+	1	NA	NA	NA	8460	NM_028394	72938	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25	heat shock protein family B (small), member 11	protein-coding	0.005000	0.402985	
mm_51495.1	chr6	83078264	83078464	+	1	NA	NA	NA	-26	NM_197992	69837	Mm.12261	NM_197992	ENSMUSG00000069678	Pcgf1	2010002K04Rik|AU024121|Nspc1	polycomb group ring finger 1	protein-coding	0.075000	0.626866	14(CCTTTAAGATGG,+,0.00)
mm_39955.1	chr5	32133732	32133932	+	1	NA	NA	NA	-2640	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.045000	0.641791	
mm_28909.1	chr3	98724466	98724666	-	1	NA	NA	NA	-23	NM_153193	15493	Mm.482364	NM_153193	ENSMUSG00000063730	Hsd3b2	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2	protein-coding	0.005000	0.407960	
mm_40517.1	chr5	57830037	57830237	+	1	NA	NA	NA	112056	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.005000	0.383085	54(GCCTATAAAGTC,+,0.00)
mm_55517.1	chr6	70217351	70217551	-	1	NA	NA	NA	574724	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.437811	
mm_33930.1	chr4	136889710	136889910	+	1	NA	NA	NA	3104	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.025000	0.417910	
mm_70594.1	chr8	13287808	13288008	+	1	NA	NA	NA	-105	NM_172282	234076	Mm.219813	NM_172282	ENSMUSG00000038497	Tmco3	B230339H12Rik|C87304	transmembrane and coiled-coil domains 3	protein-coding	0.120000	0.681592	
mm_29513.1	chr3	116423654	116423854	-	1	NA	NA	NA	278	NM_001080818	229776	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.115000	0.706468	
mm_15377.1	chr2	156475719	156475919	+	1	NA	NA	NA	285	NM_001006664	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.175000	0.845771	
mm_75758.1	chr8	69911575	69911775	-	1	NA	NA	NA	-9117	NM_023312	67184	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.030000	0.577114	
mm_57458.1	chr6	125170706	125170906	-	1	NA	NA	NA	-4339	NM_001289726	14433	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0.030000	0.542289	
mm_125517.1	chr15	57694669	57694869	+	1	NA	NA	NA	102	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.030000	0.407960	
mm_23227.1	chr3	49325584	49325784	+	1	NA	NA	NA	431632	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding	0.010000	0.427861	
mm_39380.1	chr5	13125364	13125564	+	1	NA	NA	NA	-271320	NM_001243072	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.030000	0.487562	9(CCTCTTAAACCA,+,0.00),33(GCTCTAATAGAG,+,0.00)
mm_66456.1	chr7	44869726	44869926	-	1	NA	NA	NA	-38	NM_133949	84113	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0.040000	0.592040	
mm_111984.1	chr12	110478514	110478714	-	1	NA	NA	NA	-7125	NM_001081457	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.015000	0.532338	1(CCTTTTCAAGAG,+,0.00)
mm_102568.1	chr11	61494117	61494317	-	1	NA	NA	NA	49	NM_001291037	23939	Mm.38172	NM_011841	ENSMUSG00000001034	Mapk7	BMK-1|BMK1|ERK-5|ERK5|Erk5-T|PRKM7	mitogen-activated protein kinase 7	protein-coding	0.075000	0.621891	
mm_75900.1	chr8	71272245	71272445	-	1	NA	NA	NA	245	NM_001163042	76478	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding	0.075000	0.631841	
mm_125834.1	chr15	74958092	74958292	+	1	NA	NA	NA	3086	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.000000	0.522388	
mm_87923.1	chr10	62508008	62508208	+	1	NA	NA	NA	-353	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.035000	0.502488	
mm_84348.1	chr9	64253526	64253726	-	1	NA	NA	NA	-21	NM_008927	26395	Mm.248907	NM_008927	ENSMUSG00000004936	Map2k1	MAPKK1|MEKK1|Mek1|Prkmk1	mitogen-activated protein kinase kinase 1	protein-coding	0.105000	0.726368	
mm_41708.1	chr5	101765101	101765301	+	1	NA	NA	NA	71	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.170000	0.796020	
mm_69105.1	chr7	127021006	127021206	-	1	NA	NA	NA	105	NM_001102563	69017	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.060000	0.661692	
mm_3765.1	chr1	156303368	156303568	+	1	NA	NA	NA	-120	NM_001134741	214575	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	0.160000	0.761194	
mm_38434.1	chr4	139352416	139352616	-	1	NA	NA	NA	60	NM_001290810	69902	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	0.080000	0.696517	
mm_15646.1	chr2	163063120	163063320	+	1	NA	NA	NA	-4870	NR_105970	102465607		NR_105970	ENSMUSG00000099091	Mir7003	Gm27340|mmu-mir-7003	microRNA 7003	ncRNA	0.010000	0.462687	
mm_120705.1	chr14	70978427	70978627	+	1	NA	NA	NA	88420	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.020000	0.537313	
mm_91822.1	chr10	56115443	56115643	-	1	NA	NA	NA	8626	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding	0.105000	0.696517	
mm_67924.1	chr7	99865259	99865459	-	1	NA	NA	NA	6141	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.010000	0.467662	
mm_143196.1	chr17	62649586	62649786	-	1	NA	NA	NA	231631	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.010000	0.412935	
mm_108005.1	chr12	73584225	73584425	+	1	NA	NA	NA	-471	NM_001313977	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.035000	0.611940	
mm_60473.1	chr7	44478074	44478274	+	1	NA	NA	NA	-6343	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.462687	
mm_125267.1	chr15	35531364	35531564	+	1	NA	NA	NA	129454	NR_035527	100316736		NR_035527	ENSMUSG00000076333	Mir599	mmu-mir-599	microRNA 599	ncRNA	0.005000	0.412935	
mm_59480.1	chr7	27461598	27461798	+	1	NA	NA	NA	9280	NM_001290525	233016	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0.000000	0.417910	
mm_70422.1	chr8	11476896	11477096	+	1	NA	NA	NA	-933	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.030000	0.487562	
mm_90994.1	chr10	13966746	13966946	-	1	NA	NA	NA	467	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.080000	0.656716	
mm_163979.1	chr14	55900150	55900350	-	1	NA	NA	NA	-18	NM_001082975	654795	Mm.486218	NM_001082975	ENSMUSG00000022223	Sdr39u1	2310014G06Rik	short chain dehydrogenase/reductase family 39U, member 1	protein-coding	0.080000	0.587065	
mm_164957.1	chr19	5796750	5796950	-	1	NA	NA	NA	-869	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.015000	0.497512	
mm_31211.1	chr4	43957414	43957614	+	1	NA	NA	NA	-188	NM_027450	384009	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0.085000	0.646766	
mm_132215.1	chr16	32630000	32630200	+	1	NA	NA	NA	-14543	NM_001110147	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.015000	0.437811	
mm_65183.1	chr7	19696355	19696555	-	1	NA	NA	NA	1943	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.025000	0.557214	
mm_37510.1	chr4	123892705	123892905	-	1	NA	NA	NA	-12208	NM_019660	56309	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	0.000000	0.427861	
mm_64272.1	chr7	141805613	141805813	+	1	NA	NA	NA	16702	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.025000	0.567164	
mm_107289.1	chr12	29937914	29938114	+	1	NA	NA	NA	-22	NM_181395	69675	Mm.251774	NM_181395	ENSMUSG00000020674	Pxdn	2310075M15Rik|C85409|E330004E07|VPO1|mKIAA0230	peroxidasin	protein-coding	0.105000	0.751244	
mm_159684.1	chr5	11917885	11918085	+	1	NA	NA	NA	-58	NM_001177510	545732	Mm.389066	NM_001177510	ENSMUSG00000067848	4933402N22Rik	-	RIKEN cDNA 4933402N22 gene	protein-coding	0.005000	0.467662	-17(GCTCATATAGGA,+,0.00)
mm_76647.1	chr8	93123104	93123304	-	1	NA	NA	NA	8079	NM_007954	13884	Mm.88078	NM_007954	ENSMUSG00000057400	Ces1c	Ces-N|Ee-1|Ee1|Es-4|Es-N|Es1|Es4|EsN|PESN	carboxylesterase 1C	protein-coding	0.015000	0.542289	
mm_71183.1	chr8	40862305	40862505	+	1	NA	NA	NA	38	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.100000	0.726368	
mm_92601.1	chr10	80104255	80104455	-	1	NA	NA	NA	-1653	NM_183426	216161	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch homolog 2 (Drosophila)	protein-coding	0.015000	0.542289	
mm_169906.1	chr1	65428936	65429136	-	1	NA	NA	NA	117779	NM_139270	213527	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	0.015000	0.402985	
mm_170574.1	chr19	53588948	53589148	-	1	NA	NA	NA	-11348	NM_007790	13006	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.035000	0.547264	
mm_171253.1	chr3	8022784	8022984	-	1	NA	NA	NA	-67997	NR_040587	75476	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	0.020000	0.507463	
mm_52415.1	chr6	113392414	113392614	+	1	NA	NA	NA	17	NM_133923	101100	Mm.388573	NM_133923	ENSMUSG00000030276	Ttll3	4833441J24Rik|AI450050	tubulin tyrosine ligase-like family, member 3	protein-coding	0.090000	0.716418	
mm_73944.1	chr8	120112787	120112987	+	1	NA	NA	NA	-1265	NM_001163762	234797	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.000000	0.462687	-48(GCCTATTAGAAG,-,0.00)
mm_15963.1	chr2	166020194	166020394	+	1	NA	NA	NA	27657	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.000000	0.412935	
mm_126997.1	chr15	95654376	95654576	+	1	NA	NA	NA	295	NM_207533	223843	Mm.152937	NM_207533	ENSMUSG00000045608	Dbx2	9430056A22Rik|9630005K15|AI846217|Gm1229	developing brain homeobox 2	protein-coding	0.090000	0.706468	
mm_163608.1	chr13	49223204	49223404	+	1	NA	NA	NA	-7278	NM_026738	68480	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.005000	0.348259	
mm_20960.1	chr2	151751316	151751516	-	1	NA	NA	NA	49	NR_138568	75283	Mm.195735	NM_029235		4930556L07Rik	1700020P01Rik|4930593I08Rik	RIKEN cDNA 4930556L07 gene	ncRNA	0.015000	0.507463	
mm_6801.1	chr1	84151218	84151418	-	1	NA	NA	NA	67643	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.378109	
mm_43129.1	chr5	125303209	125303409	+	1	NA	NA	NA	37785	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.005000	0.512438	
mm_75639.1	chr8	64849783	64849983	-	1	NA	NA	NA	41	NM_178633	77113	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0.205000	0.840796	
mm_137757.1	chr17	29472915	29473115	+	1	NA	NA	NA	-18030	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.000000	0.512438	
mm_104264.1	chr11	88966840	88967040	-	1	NA	NA	NA	-23	NR_003564	217066	Mm.347543	NM_001025564	ENSMUSG00000057534	Gm15698	OTTMUSG00000001305|OTTMUSG00000025408	transcription elongation factor B (SIII), polypeptide 2 pseudogene	pseudo	0.000000	0.517413	-34(GGGTATTTAAGA,-,0.00)
mm_70165.1	chr7	143599964	143600164	-	1	NA	NA	NA	26	NM_001252593	27267	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	0.090000	0.631841	
mm_172343.1	chr7	11108150	11108350	-	1	NA	NA	NA	57898	NM_001100186	545913	Mm.380086	NM_001100186	ENSMUSG00000090714	Zscan4d	EG545913	zinc finger and SCAN domain containing 4D	protein-coding	0.015000	0.577114	
mm_105921.1	chr11	115048250	115048450	-	1	NA	NA	NA	-55	NM_199201	382551	Mm.424732	NM_199201	ENSMUSG00000069607	Cd300ld3	AY457049|Cd300lh|Clm3|Lmir7|clm-3	CD300 molecule like family member D3	protein-coding	0.000000	0.467662	
mm_9630.1	chr1	176813920	176814120	-	1	NA	NA	NA	-640	NM_029756	76816	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	0.145000	0.721393	
mm_75714.1	chr8	68905639	68905839	-	1	NA	NA	NA	25184	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.363184	
mm_39267.1	chr5	3596130	3596330	+	1	NA	NA	NA	164	NM_001293806	71382	Mm.379196	NM_027777	ENSMUSG00000005907	Pex1	5430414H02Rik|E330005K07Rik|ZWS1	peroxisomal biogenesis factor 1	protein-coding	0.100000	0.631841	
mm_132371.1	chr16	34819508	34819708	+	1	NA	NA	NA	34658	NM_139300	107589	Mm.33360	NM_139300	ENSMUSG00000022836	Mylk	9530072E15Rik|A930019C19Rik|AW489456|KRP|MLCK108|MLCK210|Mlck|nmMlck|smMLCK	myosin, light polypeptide kinase	protein-coding	0.005000	0.482587	
mm_9013.1	chr1	166049194	166049394	-	1	NA	NA	NA	-46660	NM_011137	18986	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0.010000	0.587065	
mm_103845.1	chr11	83066712	83066912	-	1	NA	NA	NA	1700	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.020000	0.542289	
mm_99476.1	chr11	102604303	102604503	+	1	NA	NA	NA	-28	NM_020510	57265	Mm.36416	NM_020510	ENSMUSG00000050288	Fzd2	AL033370|AW456835|Fz10|Fzd10|Mfz10|Mfz10a	frizzled class receptor 2	protein-coding	0.045000	0.651741	
mm_141126.1	chr17	26198938	26199138	-	1	NA	NA	NA	49	NM_001081070	69191	Mm.32631	NM_001081070	ENSMUSG00000024184	Pdia2	1810041F13Rik|AI661267|Pdip|Pdipl	protein disulfide isomerase associated 2	protein-coding	0.015000	0.597015	
mm_107232.1	chr12	26478050	26478250	+	1	NA	NA	NA	8935	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.020000	0.487562	
mm_115120.1	chr13	104229276	104229476	+	1	NA	NA	NA	-12	NM_021790	60411	Mm.281498	NM_021790	ENSMUSG00000021714	Cenpk	B130045K24Rik|BB232189|C530004N04Rik|Cenp-K|Solt|Solzt	centromere protein K	protein-coding	0.040000	0.412935	
mm_132490.1	chr16	36931277	36931477	+	1	NA	NA	NA	-3606	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.005000	0.532338	
mm_52807.1	chr6	121342775	121342975	+	1	NA	NA	NA	-201	NM_001347433	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.010000	0.537313	
mm_121816.1	chr14	20397253	20397453	-	1	NA	NA	NA	-3798	NM_025440	66242	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16	mitochondrial ribosomal protein S16	protein-coding	0.015000	0.442786	46(TGGTATTTAAGC,-,0.00)
mm_2931.1	chr1	132298485	132298685	+	1	NA	NA	NA	-41	NM_144810	213417	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0.070000	0.646766	
mm_81472.1	chr9	109931477	109931677	+	1	NA	NA	NA	-197	NM_001205331	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.135000	0.706468	
mm_73768.1	chr8	115830419	115830619	+	1	NA	NA	NA	-123625	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.000000	0.462687	
mm_74756.1	chr8	19141395	19141595	-	1	NA	NA	NA	736	NM_001286493	546038	Mm.99206	NM_001034905	ENSMUSG00000059463	Spag11b	EG546038|Ep2c/h|Spag11c/h	sperm associated antigen 11B	protein-coding	0.030000	0.492537	
mm_111351.1	chr12	86950354	86950554	-	1	NA	NA	NA	3111	NM_001289432	217732	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.020000	0.417910	-35(TCGTTTAAAAAG,-,0.00)
mm_69299.1	chr7	128298010	128298210	-	1	NA	NA	NA	21	NM_145590	233913	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.090000	0.577114	
mm_118530.1	chr14	15358078	15358278	+	1	NA	NA	NA	80809	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding	0.000000	0.462687	
mm_65954.1	chr7	30428416	30428616	-	1	NA	NA	NA	5212	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.015000	0.517413	
mm_24820.1	chr3	95645559	95645759	+	1	NA	NA	NA	-13062	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.015000	0.527363	
mm_64623.1	chr7	3667115	3667315	-	1	NA	NA	NA	-1375	NM_027203	69757	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	0.025000	0.522388	
mm_82022.1	chr9	121759931	121760131	+	1	NA	NA	NA	-2	NM_001166644	270210	Mm.473702	NM_001166644	ENSMUSG00000013419	Zfp651	4732420M22Rik|BC030045|R74626	zinc finger protein 651	protein-coding	0.165000	0.845771	-95(GGCCCTTTAAGC,-,0.00)
mm_30912.1	chr4	32527002	32527202	+	1	NA	NA	NA	44560	NR_026843	414068	Mm.389550	NR_026843	ENSMUSG00000086150	Bach2os	-	BTB and CNC homology 2, opposite strand	ncRNA	0.015000	0.368159	
mm_33562.1	chr4	131875978	131876178	+	1	NA	NA	NA	2439	NM_020587	57317	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0.000000	0.472637	-95(AACTATTAAAGG,-,0.00)
mm_75691.1	chr8	68205972	68206172	-	1	NA	NA	NA	-70456	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.030000	0.502488	
mm_98369.1	chr11	94044003	94044203	+	1	NA	NA	NA	-102	NM_001025430	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.020000	0.462687	-100(ATGTTTAAAAGG,-,0.00)
mm_170009.1	chr17	17005117	17005317	+	1	NA	NA	NA	-58886	NM_001005358	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	0.030000	0.512438	
mm_8912.1	chr1	163313047	163313247	-	1	NA	NA	NA	503	NM_011127	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.030000	0.462687	29(TTTTTTAAAGCC,+,0.00)
mm_147093.1	chr18	35649220	35649420	-	1	NA	NA	NA	47	NM_027222	69816	Mm.27252	NM_027222	ENSMUSG00000024353	Mzb1	2010001M09Rik|AV064572|PACAP|pERp1	marginal zone B and B1 cell-specific protein 1	protein-coding	0.040000	0.567164	
mm_75935.1	chr8	71537335	71537535	-	1	NA	NA	NA	2	NM_198095	69550	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	0.035000	0.592040	
mm_161442.1	chr15	73055780	73055980	-	1	NA	NA	NA	-68	NM_029640	76510	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.000000	0.442786	
mm_147721.1	chr18	60844046	60844246	-	1	NA	NA	NA	4818	NM_011552	21453	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0.030000	0.537313	
mm_121290.1	chr14	105258707	105258907	+	1	NA	NA	NA	134	NM_001190989	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.185000	0.771144	
mm_144984.1	chr18	38244694	38244894	+	1	NA	NA	NA	5404	NR_015475	73516	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0.010000	0.477612	-21(CTGTCTTAAAGG,-,0.00)
mm_31580.1	chr4	57741981	57742181	+	1	NA	NA	NA	-103167	NM_009649	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.015000	0.482587	
mm_76150.1	chr8	82353366	82353566	-	1	NA	NA	NA	49120	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.005000	0.447761	
mm_96060.1	chr11	59566322	59566522	+	1	NA	NA	NA	5316	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.020000	0.517413	
mm_160938.1	chr11	94510058	94510258	-	1	NA	NA	NA	-10184	NM_027984	71889	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	0.020000	0.532338	
mm_44616.1	chr5	25529418	25529618	-	1	NA	NA	NA	-500	NR_027388	73571	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0.070000	0.626866	
mm_59179.1	chr7	24460054	24460254	+	1	NA	NA	NA	-2329	NM_011113	18793	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.020000	0.562189	
mm_40311.1	chr5	43854283	43854483	+	1	NA	NA	NA	-14426	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.010000	0.417910	17(TACTTTTAAAAG,-,0.00),18(ACTTTTAAAAGC,-,0.00),19(CTTTTAAAAGCT,+,0.00)
mm_55460.1	chr6	67533561	67533761	-	1	NA	NA	NA	2161	NM_020047	56753	Mm.439913	NM_020047	ENSMUSG00000051397	Tacstd2	C80403|EGP-1|GA733-1|Ly97|TROP2	tumor-associated calcium signal transducer 2	protein-coding	0.015000	0.497512	73(TTGTATAAAGGC,-,0.00)
mm_18428.1	chr2	60763187	60763387	-	1	NA	NA	NA	-40684	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.020000	0.532338	
mm_124525.1	chr14	122229108	122229308	-	1	NA	NA	NA	4430	NR_015532	68245	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.045000	0.502488	-36(CCGTTTATAAGG,-,0.00),-34(GTTTATAAGGGG,+,0.00)
mm_32540.1	chr4	109280191	109280391	+	1	NA	NA	NA	16	NM_007943	13858	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0.145000	0.776119	
mm_149733.1	chr19	21937205	21937405	+	1	NA	NA	NA	158965	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.035000	0.547264	
mm_11766.1	chr2	38536511	38536711	+	1	NA	NA	NA	24735	NM_001159631	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.020000	0.557214	
mm_119429.1	chr14	45573437	45573637	+	1	NA	NA	NA	29827	NR_045809	67651	Mm.55930	NR_045809		4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	0.015000	0.512438	
mm_173122.1	chrX	16299258	16299458	-	1	NA	NA	NA	-223511	NM_001310461	66742	Mm.45302	NM_025738	ENSMUSG00000023257	Cypt1	4931420D14Rik|Ckt1r3|Cypt5|Cypt6|TISP55	cysteine-rich perinuclear theca 1	protein-coding	0.020000	0.477612	-18(GTATATATAAAG,-,0.00)
mm_47952.1	chr5	135527623	135527823	-	1	NA	NA	NA	17399	NM_146001	215114	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.000000	0.527363	
mm_54331.1	chr6	30640629	30640829	-	1	NA	NA	NA	1511	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.035000	0.552239	
mm_127703.1	chr15	102990897	102991097	+	1	NA	NA	NA	458	NM_010466	15426	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.090000	0.646766	75(CCCTTTATGGGG,+,0.00)
mm_153936.1	chr19	47460663	47460863	-	1	NA	NA	NA	3648	NM_001164717	14218	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.025000	0.587065	-34(GTTTATAAAAGG,-,0.00)
mm_121166.1	chr14	103012849	103013049	+	1	NA	NA	NA	20854	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.005000	0.532338	
mm_157404.1	chrX	38435072	38435272	-	1	NA	NA	NA	21288	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.010000	0.388060	-26(GTCCTTAAATGG,-,0.00),-24(CCTTAAATGGAC,+,0.00)
mm_79937.1	chr9	65896351	65896551	+	1	NA	NA	NA	6128	NM_026515	68026	Mm.351273	NM_026515	ENSMUSG00000040204	Pclaf	2810417H13Rik|AA409629|Ns5apt9|Ns5atp9|PAF15|Paf|mKIAA0101|p15(PAF)	PCNA clamp associated factor	protein-coding	0.015000	0.487562	
mm_172523.1	chr7	83755725	83755925	+	1	NA	NA	NA	-20335	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.065000	0.427861	
mm_89286.1	chr10	87880850	87881050	+	1	NA	NA	NA	19839	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.005000	0.353234	
mm_68437.1	chr7	109960113	109960313	-	1	NA	NA	NA	209	NM_021494	19347	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	0.175000	0.820896	
mm_152805.1	chr19	21942297	21942497	-	1	NA	NA	NA	164057	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.015000	0.447761	
mm_99887.1	chr11	109472142	109472342	+	1	NA	NA	NA	987	NM_134038	104681	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.050000	0.527363	
mm_73642.1	chr8	110754897	110755097	+	1	NA	NA	NA	29271	NM_001310591	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.015000	0.646766	
mm_92757.1	chr10	81037220	81037420	-	1	NA	NA	NA	-3408	NM_134135	106947	Mm.5353	NM_134135	ENSMUSG00000046822	Slc39a3	AI845814|Zip3	solute carrier family 39 (zinc transporter), member 3	protein-coding	0.080000	0.661692	
mm_108845.1	chr12	98268567	98268767	+	1	NA	NA	NA	32	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.010000	0.422886	-95(TCATTAAAAGGC,+,0.00)
mm_113333.1	chr13	31625603	31625803	+	1	NA	NA	NA	-113	NM_010225	14238	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	0.075000	0.696517	
mm_40586.1	chr5	64160114	64160314	+	1	NA	NA	NA	-46	NM_019636	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.095000	0.706468	
mm_164923.1	chr18	77415492	77415692	+	1	NA	NA	NA	133634	NM_172834	240411	Mm.380247	NM_172834	ENSMUSG00000032818	Loxhd1	1700096C21Rik|4932417K07|sba	lipoxygenase homology domains 1	protein-coding	0.000000	0.502488	
mm_107784.1	chr12	61528581	61528781	+	1	NA	NA	NA	5514	NM_001310586	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.000000	0.308458	
mm_89274.1	chr10	87860919	87861119	+	1	NA	NA	NA	-92	NM_001111274	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.020000	0.527363	
mm_12813.1	chr2	80315422	80315622	+	1	NA	NA	NA	56	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.105000	0.691542	
mm_68454.1	chr7	110120229	110120429	-	1	NA	NA	NA	-1730	NM_009516	22390	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.005000	0.378109	
mm_123674.1	chr14	69472740	69472940	-	1	NA	NA	NA	39709	NM_173420	239167	Mm.259889	NM_173420	ENSMUSG00000047977	Synb	D930020E02Rik|syncytin-B	syncytin b	protein-coding	0.015000	0.477612	84(CATTTTATAGAC,+,0.00)
mm_170233.1	chr17	84355261	84355461	+	1	NA	NA	NA	110847	NM_183021	240174	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.015000	0.412935	-30(TGGTATAAAAAG,-,0.00)
mm_119384.1	chr14	41136337	41136537	+	1	NA	NA	NA	4649	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.010000	0.358209	
mm_164212.1	chr15	82508466	82508666	+	1	NA	NA	NA	-46532	NM_201360	380997	Mm.482248	NM_201360	ENSMUSG00000096852	Cyp2d12	9030605E09Rik	cytochrome P450, family 2, subfamily d, polypeptide 12	protein-coding	0.000000	0.477612	-35(GACCATAAAAGG,-,0.00),-33(CCATAAAAGGGG,+,0.00)
mm_99508.1	chr11	103056785	103056985	+	1	NA	NA	NA	28323	NM_008707	18107	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.025000	0.542289	
mm_7191.1	chr1	92908025	92908225	-	1	NA	NA	NA	1136	NM_175118	67446	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	0.040000	0.572139	
mm_69682.1	chr7	139988412	139988612	-	1	NA	NA	NA	-1638	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.025000	0.522388	
mm_132407.1	chr16	35022317	35022517	+	1	NA	NA	NA	-4	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.115000	0.736318	
mm_170313.1	chr18	36560802	36561002	+	1	NA	NA	NA	299	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.125000	0.761194	
mm_43136.1	chr5	125389390	125389590	+	1	NA	NA	NA	527	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.100000	0.696517	
mm_61669.1	chr7	80781459	80781659	+	1	NA	NA	NA	21772	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.015000	0.477612	
mm_61191.1	chr7	63896388	63896588	+	1	NA	NA	NA	-20369	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.025000	0.597015	
mm_12283.1	chr2	69008349	69008549	+	1	NA	NA	NA	-127351	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.000000	0.388060	
mm_171114.1	chr3	13826176	13826376	-	1	NA	NA	NA	-120096	NM_001163329	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.050000	0.487562	-68(CTCCTTAAGAGG,-,0.00)
mm_122895.1	chr14	54949860	54950060	-	1	NA	NA	NA	-818	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.015000	0.582090	
mm_10602.1	chr2	18698908	18699108	+	1	NA	NA	NA	-14	NM_001001334	381350	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	0.090000	0.641791	
mm_34484.1	chr4	148511387	148511587	+	1	NA	NA	NA	-11025	NM_001039554	654812	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	0.020000	0.542289	
mm_130644.1	chr15	100599871	100600071	-	1	NA	NA	NA	13	NM_001304965	19009	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0.120000	0.796020	
mm_35405.1	chr4	34730095	34730295	-	1	NA	NA	NA	11	NM_027041	69329	Mm.389548	NM_027041	ENSMUSG00000028294	Cfap206	1700003M02Rik|AU024269	cilia and flagella associated protein 206	protein-coding	0.120000	0.711443	
mm_17083.1	chr2	22953451	22953651	-	1	NA	NA	NA	58029	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.025000	0.497512	
mm_9801.1	chr1	181860630	181860830	-	1	NA	NA	NA	-18329	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.010000	0.512438	
mm_136585.1	chr17	4994230	4994430	+	1	NA	NA	NA	-744	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.130000	0.706468	
mm_9564.1	chr1	173977194	173977394	-	1	NA	NA	NA	5550	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.005000	0.467662	
mm_95020.1	chr11	32001566	32001766	+	1	NA	NA	NA	389	NM_001290681	18197	Mm.3304	NM_008741	ENSMUSG00000020297	Nsg2	-	neuron specific gene family member 2	protein-coding	0.010000	0.487562	
mm_171342.1	chr4	103563801	103564001	+	1	NA	NA	NA	181401	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA	0.040000	0.592040	
mm_166448.1	chr5	137268463	137268663	-	1	NA	NA	NA	-19691	NM_009599	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.030000	0.651741	
mm_79380.1	chr9	54765458	54765658	+	1	NA	NA	NA	810	NM_013496	12903	Mm.34797	NM_013496	ENSMUSG00000032291	Crabp1	AI326249|CRABP-I|Crabp-1|CrabpI|Rbp-5	cellular retinoic acid binding protein I	protein-coding	0.080000	0.587065	
mm_131462.1	chr16	17018292	17018492	+	1	NA	NA	NA	35010	NM_001038663	26413	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	0.015000	0.467662	
mm_12926.1	chr2	85037389	85037589	+	1	NA	NA	NA	38	NM_001136081	20833	Mm.219793	NM_182990	ENSMUSG00000027067	Ssrp1	C81323|Hmg1-rs1|Hmgi-rs3|Hmgox|T160	structure specific recognition protein 1	protein-coding	0.095000	0.592040	
mm_158093.1	chrX	101420116	101420316	-	1	NA	NA	NA	6	NM_001177988	56364	Mm.23458	NM_019831	ENSMUSG00000031310	Zmym3	9030216B10Rik|AW122925|DXS6673El|Zfp261	zinc finger, MYM-type 3	protein-coding	0.050000	0.621891	
mm_53109.1	chr6	125083134	125083334	+	1	NA	NA	NA	11957	NM_001163268	381810	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0.015000	0.477612	23(CCTTATATAGTA,+,0.00)
mm_116308.1	chr13	36734371	36734571	-	1	NA	NA	NA	6	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.030000	0.597015	
mm_40765.1	chr5	66997011	66997211	+	1	NA	NA	NA	28695	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.075000	0.626866	
mm_53897.1	chr6	3399460	3399660	-	1	NA	NA	NA	11	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.005000	0.432836	
mm_150941.1	chr19	46306066	46306266	+	1	NA	NA	NA	236	NM_001177370	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.005000	0.552239	
mm_75063.1	chr8	33731708	33731908	-	1	NA	NA	NA	-106	NM_001167921	68153	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	0.120000	0.641791	
mm_3472.1	chr1	150104559	150104759	+	1	NA	NA	NA	4628	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.363184	
mm_129317.1	chr15	77760995	77761195	-	1	NA	NA	NA	-5866	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.010000	0.492537	
mm_86870.1	chr10	21994584	21994784	+	1	NA	NA	NA	18	NM_011361	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.100000	0.651741	-34(GGGCTTATAAAG,-,0.00),-32(GCTTATAAAGCC,+,0.00)
mm_129480.1	chr15	78770731	78770931	-	1	NA	NA	NA	2614	NM_008595	17305	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.010000	0.537313	
mm_83414.1	chr9	44878568	44878768	-	1	NA	NA	NA	2606	NM_001081049	214162	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	0.010000	0.358209	
mm_65365.1	chr7	25072172	25072372	-	1	NA	NA	NA	97	NM_008168	14809	Mm.2879	NM_008168	ENSMUSG00000003378	Grik5	GluK5|GluRgamma2|KA2	glutamate receptor, ionotropic, kainate 5 (gamma 2)	protein-coding	0.035000	0.606965	
mm_71054.1	chr8	33731807	33732007	+	1	NA	NA	NA	-7	NM_001167921	68153	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	0.140000	0.726368	
mm_40587.1	chr5	64160149	64160349	+	1	NA	NA	NA	-11	NM_019636	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.105000	0.696517	
mm_51778.1	chr6	88189804	88190004	+	1	NA	NA	NA	-8760	NM_008090	14461	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.100000	0.706468	
mm_65049.1	chr7	18646937	18647137	-	1	NA	NA	NA	9688	NM_027403	72242	Mm.326858	NM_027403	ENSMUSG00000070796	Psg21	1600019C01Rik|1600025N01Rik|1600026N13Rik|cea8	pregnancy-specific glycoprotein 21	protein-coding	0.000000	0.467662	
mm_109537.1	chr12	111545236	111545436	+	1	NA	NA	NA	4390	NR_033168	100316932	Mm.484709	NR_033168	ENSMUSG00000064493	Snora28	MBI-13	small nucleolar RNA, H/ACA box 28	snoRNA	0.015000	0.373134	
mm_126469.1	chr15	81301673	81301873	+	1	NA	NA	NA	-49911	NR_077230	78102	Mm.296832	NR_077229		8430426J06Rik	-	RIKEN cDNA 8430426J06 gene	ncRNA	0.025000	0.477612	
mm_2641.1	chr1	125174814	125175014	+	1	NA	NA	NA	260813	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.040000	0.592040	
mm_73079.1	chr8	94478553	94478753	+	1	NA	NA	NA	5890	NM_001033207	434341	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	0.025000	0.417910	
mm_60049.1	chr7	31059832	31060032	+	1	NA	NA	NA	-3	NM_144556	243914	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	0.020000	0.582090	
mm_115778.1	chr13	19311330	19311530	-	1	NA	NA	NA	84383	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.358209	
mm_14471.1	chr2	131491656	131491856	+	1	NA	NA	NA	-106	NM_001177834	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.095000	0.726368	
mm_95275.1	chr11	45851908	45852108	+	1	NA	NA	NA	44	NM_001045520	216705	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.175000	0.791045	
mm_109309.1	chr12	109560732	109560932	+	1	NA	NA	NA	-2860	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.015000	0.378109	
mm_129860.1	chr15	83313489	83313689	-	1	NA	NA	NA	36658	NM_025445	66251	Mm.258910	NM_025445	ENSMUSG00000054277	Arfgap3	0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1	ADP-ribosylation factor GTPase activating protein 3	protein-coding	0.025000	0.512438	
mm_141470.1	chr17	30606541	30606741	-	1	NA	NA	NA	6018	NM_025374	109801	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding	0.045000	0.477612	
mm_56911.1	chr6	119330581	119330781	-	1	NA	NA	NA	85	NM_172492	211187	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	0.070000	0.661692	
mm_27368.1	chr3	50437970	50438170	-	1	NA	NA	NA	5543	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.417910	
mm_115899.1	chr13	23313293	23313493	-	1	NA	NA	NA	14	NR_126443	75322	Mm.108666	NR_126443	ENSMUSG00000085488	4930557F10Rik	-	RIKEN cDNA 4930557F10 gene	ncRNA	0.070000	0.547264	
mm_152799.1	chr19	21652619	21652819	-	1	NA	NA	NA	72	NM_025423	66206	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0.040000	0.467662	
mm_5244.1	chr1	16519131	16519331	-	1	NA	NA	NA	71	NM_025303	29819	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen (RNA binding protein) homolog 2 (Drosophila)	protein-coding	0.160000	0.805970	
mm_107231.1	chr12	26478023	26478223	+	1	NA	NA	NA	8908	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.030000	0.517413	
mm_88287.1	chr10	75211953	75212153	+	1	NA	NA	NA	-20	NM_153406	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.115000	0.741294	
mm_99611.1	chr11	104582000	104582200	+	1	NA	NA	NA	-19902	NR_130177	100415912	Mm.446786	NR_130177		Gm11665	Gm11664|OTTMUSG00000003182|OTTMUSG00000003183	predicted gene 11665	ncRNA	0.010000	0.452736	
mm_26030.1	chr3	135439385	135439585	+	1	NA	NA	NA	726	NM_025356	66105	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.095000	0.656716	
mm_109623.1	chr12	112766615	112766815	+	1	NA	NA	NA	6060	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.000000	0.517413	
mm_89316.1	chr10	87929149	87929349	+	1	NA	NA	NA	-37422	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.000000	0.398010	
mm_145400.1	chr18	57354665	57354865	+	1	NA	NA	NA	32	NM_028447	73137	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	0.135000	0.751244	
mm_169275.1	chr13	91460987	91461187	+	1	NA	NA	NA	-10	NM_024272	66970	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.095000	0.726368	
mm_25795.1	chr3	127632652	127632852	+	1	NA	NA	NA	-393	NM_009718	11924	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	0.100000	0.646766	
mm_55289.1	chr6	54566270	54566470	-	1	NA	NA	NA	12	NM_027268	69938	Mm.41557	NM_027268	ENSMUSG00000019124	Scrn1	2810019K23Rik|6330535A03Rik|AI852905|SES1|mKIAA0193	secernin 1	protein-coding	0.095000	0.681592	
mm_146609.1	chr18	10012690	10012890	-	1	NA	NA	NA	17359	NM_021522	59025	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0.000000	0.348259	
mm_149726.1	chr19	21792688	21792888	+	1	NA	NA	NA	14448	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.085000	0.621891	
mm_37205.1	chr4	117872478	117872678	-	1	NA	NA	NA	-108	NM_001034876	381546	Mm.440118	NM_001034876	ENSMUSG00000078588	Ccdc24	Gm1028	coiled-coil domain containing 24	protein-coding	0.045000	0.641791	
mm_68808.1	chr7	125492303	125492503	-	1	NA	NA	NA	-861	NM_026330	67711	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.045000	0.467662	
mm_172970.1	chr9	90114491	90114691	-	1	NA	NA	NA	229	NM_001039147	21761	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.070000	0.621891	
mm_84285.1	chr9	62980788	62980988	-	1	NA	NA	NA	-9	NM_019663	56469	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.115000	0.661692	
mm_41645.1	chr5	98180774	98180974	+	1	NA	NA	NA	5	NM_029947	77630	Mm.332511	NM_029947	ENSMUSG00000035456	Prdm8	4930565F05Rik|PFM5	PR domain containing 8	protein-coding	0.030000	0.507463	
mm_96472.1	chr11	67652484	67652684	+	1	NA	NA	NA	-42742	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.010000	0.557214	
mm_33037.1	chr4	122857877	122858077	+	1	NA	NA	NA	21750	NM_008917	19063	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.010000	0.447761	-44(GTGCCTAAAAGA,-,0.00)
mm_50479.1	chr6	48988073	48988273	+	1	NA	NA	NA	1312	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.020000	0.572139	
mm_88626.1	chr10	79880930	79881130	+	1	NA	NA	NA	1363	NM_011178	19152	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	0.030000	0.572139	
mm_159704.1	chr5	27841738	27841938	+	1	NA	NA	NA	-109	NM_008314	15563	Mm.4835	NM_008314	ENSMUSG00000039106	Htr5a	Htr5	5-hydroxytryptamine (serotonin) receptor 5A	protein-coding	0.050000	0.621891	
mm_89941.1	chr10	111278200	111278400	+	1	NA	NA	NA	-20379	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.000000	0.427861	
mm_132667.1	chr16	42258028	42258228	+	1	NA	NA	NA	45341	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0.000000	0.402985	
mm_29899.1	chr3	131466158	131466358	-	1	NA	NA	NA	-98510	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.025000	0.467662	
mm_137596.1	chr17	28142194	28142394	+	1	NA	NA	NA	-232	NM_001004366	268935	Mm.258491	NM_001004366	ENSMUSG00000038677	Scube3	CEGF3|D030038I21Rik	signal peptide, CUB domain, EGF-like 3	protein-coding	0.120000	0.711443	
mm_140047.1	chr17	74528184	74528384	+	1	NA	NA	NA	-11	NM_007566	12211	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.065000	0.671642	
mm_20103.1	chr2	121085650	121085850	-	1	NA	NA	NA	9	NM_028799	74176	Mm.20187	NM_028799	ENSMUSG00000053675	Tgm5	2310007C07Rik|TGMX|TGx	transglutaminase 5	protein-coding	0.010000	0.606965	
mm_162779.1	chr10	69563657	69563857	+	1	NA	NA	NA	30049	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.000000	0.462687	
mm_54641.1	chr6	38837211	38837411	-	1	NA	NA	NA	0	NM_001136065	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.010000	0.487562	
mm_4116.1	chr1	167689458	167689658	+	1	NA	NA	NA	0	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding	0.040000	0.572139	
mm_37275.1	chr4	118620702	118620902	-	1	NA	NA	NA	3	NM_026932	69072	Mm.29906	NM_026932	ENSMUSG00000028729	Ebna1bp2	1810014B19Rik|AA537058|B830003A16Rik|C81321|Ebp2|Nobp|p40	EBNA1 binding protein 2	protein-coding	0.060000	0.547264	-41(CCTTTTCAACAG,+,0.00)
mm_75599.1	chr8	61759928	61760128	-	1	NA	NA	NA	70	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.095000	0.676617	
mm_70535.1	chr8	13037720	13037920	+	1	NA	NA	NA	512	NM_001242368	14058	Mm.262589	NM_007972	ENSMUSG00000031444	F10	Cf10|fX	coagulation factor X	protein-coding	0.010000	0.621891	
mm_72357.1	chr8	79712818	79713018	+	1	NA	NA	NA	1098	NM_026904	68999	Mm.257445	NM_026904	ENSMUSG00000036977	Anapc10	1500026N15Rik|A830003M23Rik|APC10	anaphase promoting complex subunit 10	protein-coding	0.010000	0.502488	
mm_93710.1	chr10	118855789	118855989	-	1	NA	NA	NA	13014	NM_001014390	69181	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.020000	0.388060	
mm_126570.1	chr15	82252372	82252572	+	1	NA	NA	NA	75	NR_037697	76505	Mm.23023	NR_037697	ENSMUSG00000068099	1500009C09Rik	-	RIKEN cDNA 1500009C09 gene	ncRNA	0.020000	0.467662	
mm_155051.1	chrX	42155387	42155587	+	1	NA	NA	NA	4786	NM_021465	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.020000	0.442786	
mm_162454.1	chr1	126824645	126824845	-	1	NA	NA	NA	5887	NM_001081756	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.010000	0.532338	72(GGCTCTATGAGG,-,0.00)
mm_143925.1	chr17	85618488	85618688	-	1	NA	NA	NA	-192	NR_038082	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.060000	0.611940	
mm_154724.1	chrX	9435877	9436077	+	1	NA	NA	NA	33347	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.447761	
mm_30999.1	chr4	40143416	40143616	+	1	NA	NA	NA	251	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.110000	0.716418	
mm_91679.1	chr10	43540885	43541085	-	1	NA	NA	NA	9	NM_026411	67851	Mm.209953	NM_026411	ENSMUSG00000019797	1700021F05Rik	-	RIKEN cDNA 1700021F05 gene	protein-coding	0.110000	0.751244	
mm_90967.1	chr10	13388738	13388938	-	1	NA	NA	NA	132	NM_001195066	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.025000	0.542289	
mm_134794.1	chr16	24193296	24193496	-	1	NA	NA	NA	-199954	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.030000	0.572139	
mm_72191.1	chr8	72492833	72493033	+	1	NA	NA	NA	-319	NM_177766	270066	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	0.105000	0.641791	
mm_32634.1	chr4	115000100	115000300	+	1	NA	NA	NA	82	NM_001304555	20460	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	0.105000	0.666667	
mm_105556.1	chr11	106487662	106487862	-	1	NA	NA	NA	34	NM_023913	78943	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.120000	0.731343	
mm_69505.1	chr7	134341867	134342067	-	1	NA	NA	NA	22917	NM_001199941	71007	Mm.334285	NM_001081331	ENSMUSG00000030994	D7Ertd443e	4933400E14Rik|FATS|Gm497	DNA segment, Chr 7, ERATO Doi 443, expressed	protein-coding	0.000000	0.472637	
mm_146731.1	chr18	15312645	15312845	-	1	NA	NA	NA	90254	NM_001308647	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.020000	0.557214	
mm_50947.1	chr6	58640466	58640666	+	1	NA	NA	NA	43894	NM_011920	26357	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP-binding cassette, sub-family G (WHITE), member 2	protein-coding	0.135000	0.746269	
mm_19667.1	chr2	103303095	103303295	-	1	NA	NA	NA	1	NM_007914	13661	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding	0.020000	0.467662	
mm_22210.1	chr2	174266955	174267155	-	1	NA	NA	NA	70	NR_029646	723906		NR_029646	ENSMUSG00000065521	Mir296	Mirn296|mir-296|mmu-mir-296	microRNA 296	ncRNA	0.020000	0.567164	
mm_31779.1	chr4	63560538	63560738	+	1	NA	NA	NA	278	NM_144905	230279	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.020000	0.527363	
mm_34627.1	chr4	150569468	150569668	+	1	NA	NA	NA	82606	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.170000	0.805970	
mm_65488.1	chr7	25680926	25681126	-	1	NA	NA	NA	-132	NM_172148	232987	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0.090000	0.626866	
mm_8781.1	chr1	161241680	161241880	-	1	NA	NA	NA	9430	NR_130150	11758	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	0.025000	0.487562	
mm_101980.1	chr11	50415629	50415829	-	1	NA	NA	NA	15382	NM_172557	216724	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	0.005000	0.358209	
mm_104128.1	chr11	86805173	86805373	-	1	NA	NA	NA	2387	NM_026191	67487	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.025000	0.432836	
mm_60362.1	chr7	44441636	44441836	+	1	NA	NA	NA	-751	NM_198250	272381	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	0.025000	0.567164	
mm_43051.1	chr5	124115978	124116178	+	1	NA	NA	NA	-30	NM_144509	65105	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	0.075000	0.616915	
mm_138895.1	chr17	43568353	43568553	+	1	NA	NA	NA	2	NM_013737	27226	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.045000	0.611940	
mm_45025.1	chr5	38563125	38563325	-	1	NA	NA	NA	-1630	NM_011715	22388	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0.000000	0.452736	
mm_7322.1	chr1	100180185	100180385	-	1	NA	NA	NA	407520	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0.015000	0.437811	
mm_28750.1	chr3	95818749	95818949	-	1	NA	NA	NA	104	NM_001081293	75137	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	0.110000	0.726368	
mm_32838.1	chr4	117835190	117835390	+	1	NA	NA	NA	32	NM_008135	14664	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	0.060000	0.656716	
mm_116843.1	chr13	54693741	54693941	-	1	NA	NA	NA	119	NR_027395	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.125000	0.761194	
mm_78833.1	chr9	44234268	44234468	+	1	NA	NA	NA	-322	NM_007619	12402	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.035000	0.527363	
mm_22630.1	chr3	14767385	14767585	+	1	NA	NA	NA	10975	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.010000	0.457711	
mm_163110.1	chr11	70433875	70434075	+	1	NA	NA	NA	1395	NM_001271358	216869	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872	arrestin, beta 2	protein-coding	0.005000	0.592040	
mm_126952.1	chr15	92161255	92161455	+	1	NA	NA	NA	-2	NM_001159647	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.020000	0.452736	
mm_38890.1	chr4	149749359	149749559	-	1	NA	NA	NA	-11391	NM_177672	230917	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	0.005000	0.497512	
mm_32232.1	chr4	102254826	102255026	+	1	NA	NA	NA	-13	NM_019840	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.005000	0.393035	
mm_136697.1	chr17	7169991	7170191	+	1	NA	NA	NA	-24	NM_011299	20112	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.095000	0.681592	
mm_16575.1	chr2	3474897	3475097	-	1	NA	NA	NA	-11	NR_027509	64707	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 homolog 2 (Drosophila)	protein-coding	0.105000	0.706468	
mm_25784.1	chr3	126746602	126746802	+	1	NA	NA	NA	149751	NM_023813	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.020000	0.447761	
mm_32141.1	chr4	99650344	99650544	+	1	NA	NA	NA	-5855	NM_010425	15221	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	0.065000	0.552239	
mm_50304.1	chr6	47781559	47781759	+	1	NA	NA	NA	21993	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.020000	0.412935	-94(GACTTGTAAAGG,-,0.00),-68(CCTTATATATCT,+,0.00)
mm_76687.1	chr8	94098337	94098537	-	1	NA	NA	NA	374	NM_026116	67378	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	0.100000	0.646766	
mm_71910.1	chr8	70083400	70083600	+	1	NA	NA	NA	-29	NM_177900	330790	Mm.152048	NM_177900	ENSMUSG00000007594	Hapln4	9330174O11|Bral2|Lpr4	hyaluronan and proteoglycan link protein 4	protein-coding	0.110000	0.666667	-73(CACCTTTAAAGC,-,0.00),-72(ACCTTTAAAGCG,+,0.00),-71(CCTTTAAAGCGC,+,0.00)
mm_58546.1	chr7	4657713	4657913	+	1	NA	NA	NA	1137	NM_172894	243819	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.005000	0.532338	
mm_39715.1	chr5	28032002	28032202	+	1	NA	NA	NA	-39310	NM_153526	231070	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.015000	0.532338	
mm_86811.1	chr10	20347724	20347924	+	1	NA	NA	NA	5	NM_027930	71804	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0.130000	0.656716	
mm_46702.1	chr5	110176405	110176605	-	1	NA	NA	NA	-1	NR_040430	100504007	Mm.441495	NR_040430	ENSMUSG00000086247	Gm15787	OTTMUSG00000026209	predicted gene 15787	ncRNA	0.075000	0.597015	
mm_12011.1	chr2	57367369	57367569	+	1	NA	NA	NA	129087	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.040000	0.507463	
mm_157300.1	chrX	20928410	20928610	-	1	NA	NA	NA	3045	NM_008823	18636	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	0.010000	0.512438	
mm_140960.1	chr17	24644855	24645055	-	1	NA	NA	NA	2	NM_023449	65962	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0.010000	0.597015	
mm_138696.1	chr17	35980315	35980515	+	1	NA	NA	NA	460	NM_008136	14670	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	0.080000	0.711443	
mm_90408.1	chr10	127420241	127420441	+	1	NA	NA	NA	-526	NM_027900	71750	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.025000	0.547264	
mm_35542.1	chr4	41464554	41464754	-	1	NA	NA	NA	194	NM_024241	109242	Mm.370288	NM_024241	ENSMUSG00000028438	Kif24	4933425J19Rik|9430029L23Rik	kinesin family member 24	protein-coding	0.090000	0.616915	
mm_77650.1	chr8	124563848	124564048	-	1	NA	NA	NA	5759	NM_007428	11606	Mm.301626	NM_007428	ENSMUSG00000031980	Agt	AI265500|AngI|AngII|Aogen|Serpina8	angiotensinogen (serpin peptidase inhibitor, clade A, member 8)	protein-coding	0.020000	0.592040	
mm_150560.1	chr19	39347246	39347446	+	1	NA	NA	NA	60261	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.000000	0.417910	
mm_90891.1	chr10	10296829	10297029	-	1	NA	NA	NA	175385	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.005000	0.442786	
mm_37476.1	chr4	123565390	123565590	-	1	NA	NA	NA	-50930	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.005000	0.467662	
mm_63319.1	chr7	126928818	126929018	+	1	NA	NA	NA	39	NM_172747	233877	Mm.245897	NM_172747	ENSMUSG00000030685	Kctd13	1500003N18Rik|AV259508|PDIP1alpha|Pdip1|Poldip1	potassium channel tetramerisation domain containing 13	protein-coding	0.165000	0.776119	
mm_33766.1	chr4	134401214	134401414	+	1	NA	NA	NA	-1598	NM_001285874	100163	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	0.070000	0.611940	
mm_66745.1	chr7	46711985	46712185	-	1	NA	NA	NA	-1434	NM_030233	78935	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.020000	0.482587	
mm_18605.1	chr2	68238808	68239008	-	1	NA	NA	NA	134236	NM_020283	26877	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	0.000000	0.373134	
mm_161767.1	chr17	36271286	36271486	-	1	NA	NA	NA	47	NM_178281	79263	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0.140000	0.751244	
mm_74725.1	chr8	17535112	17535312	-	1	NA	NA	NA	173	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.140000	0.781095	
mm_140385.1	chr17	87174890	87175090	+	1	NA	NA	NA	19952	NR_046016	399626	Mm.396062	NR_046016		C330024C12Rik	-	RIKEN cDNA C330024C12 gene	ncRNA	0.015000	0.547264	
mm_39869.1	chr5	31074708	31074908	+	1	NA	NA	NA	18719	NM_011773	22784	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.005000	0.557214	
mm_130182.1	chr15	93519377	93519577	-	1	NA	NA	NA	76414	NM_001033217	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.125000	0.716418	
mm_66692.1	chr7	45896585	45896785	-	1	NA	NA	NA	26	NM_001291064	58867	Mm.214217	NM_021482	ENSMUSG00000040231	Syngr4	1700016O14Rik	synaptogyrin 4	protein-coding	0.045000	0.587065	
mm_115202.1	chr13	109116163	109116363	+	1	NA	NA	NA	-208481	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.025000	0.537313	
mm_76143.1	chr8	81854590	81854790	-	1	NA	NA	NA	512128	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.015000	0.467662	
mm_33969.1	chr4	137610590	137610790	+	1	NA	NA	NA	16501	NM_130879	170707	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	0.030000	0.522388	
mm_133927.1	chr16	3717996	3718196	-	1	NA	NA	NA	28	NM_001161790	54483	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.025000	0.517413	
mm_42999.1	chr5	123414842	123415042	+	1	NA	NA	NA	20144	NM_177582	208104	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.005000	0.353234	
mm_149359.1	chr19	11047879	11048079	+	1	NA	NA	NA	2587	NR_102366	107350	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.010000	0.452736	
mm_8954.1	chr1	164458631	164458831	-	1	NA	NA	NA	-376	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.050000	0.641791	
mm_150820.1	chr19	44407929	44408129	+	1	NA	NA	NA	-320	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.015000	0.487562	38(TCTTTAAGAGCA,+,0.00)
mm_12520.1	chr2	72137128	72137328	+	1	NA	NA	NA	82611	NM_001204166	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.015000	0.422886	
mm_49180.1	chr6	15184476	15184676	+	1	NA	NA	NA	-930	NM_212435	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.010000	0.417910	
mm_56455.1	chr6	97890473	97890673	-	1	NA	NA	NA	-39244	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.020000	0.363184	
mm_27547.1	chr3	57847605	57847805	-	1	NA	NA	NA	52	NM_019410	18645	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	0.180000	0.805970	
mm_52493.1	chr6	114654720	114654920	+	1	NA	NA	NA	11723	NM_001253717	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.005000	0.437811	
mm_119969.1	chr14	55540202	55540402	+	1	NA	NA	NA	36	NM_028994	74551	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding	0.055000	0.636816	54(TCCTTTTTAAGC,-,0.00),56(CTTTTTAAGCGC,+,0.00)
mm_128873.1	chr15	73038531	73038731	-	1	NA	NA	NA	17181	NM_029640	76510	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.020000	0.532338	
mm_135922.1	chr16	69800309	69800509	-	1	NA	NA	NA	-28	NR_130991	78110	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	-	RIKEN cDNA 4930428D20 gene	ncRNA	0.005000	0.378109	
mm_26447.1	chr3	142635773	142635973	+	1	NA	NA	NA	-11927	NR_105802	102465200		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.020000	0.442786	
mm_107685.1	chr12	55080125	55080325	+	1	NA	NA	NA	-115	NM_028314	72658	Mm.434380	NM_028314	ENSMUSG00000062198	2700097O09Rik	AW552125	RIKEN cDNA 2700097O09 gene	protein-coding	0.115000	0.666667	
mm_12994.1	chr2	90885767	90885967	+	1	NA	NA	NA	81	NM_026161	67445	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0.100000	0.706468	
mm_138236.1	chr17	34417225	34417425	+	1	NA	NA	NA	18505	NM_001163855	407788	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	0.005000	0.477612	
mm_15154.1	chr2	154008176	154008376	+	1	NA	NA	NA	0	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.010000	0.467662	
mm_53292.1	chr6	129036424	129036624	+	1	NA	NA	NA	-9377	NR_024262	232408	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.000000	0.437811	
mm_84670.1	chr9	72010374	72010574	-	1	NA	NA	NA	47033	NR_029879	723889		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.000000	0.318408	
mm_9659.1	chr1	177796324	177796524	-	1	NA	NA	NA	85	NM_007422	11566	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.100000	0.716418	
mm_146211.1	chr18	76930383	76930583	+	1	NA	NA	NA	456	NM_025409	66191	Mm.28593	NM_025409	ENSMUSG00000090000	Ier3ip1	1110057H19Rik|AI644142|AL022842|AL022863|AV026606	immediate early response 3 interacting protein 1	protein-coding	0.005000	0.432836	
mm_68612.1	chr7	116443306	116443506	-	1	NA	NA	NA	52	NM_011083	18704	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	protein-coding	0.105000	0.656716	
mm_82340.1	chr9	10904701	10904901	-	1	NA	NA	NA	-26	NM_001170787	244682	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0.105000	0.701493	82(TGCCATTAAAGC,-,0.00)
mm_163413.1	chr12	78980424	78980624	-	1	NA	NA	NA	2954	NM_001170401	268567	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.005000	0.522388	
mm_30447.1	chr3	153733819	153734019	-	1	NA	NA	NA	-8786	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.000000	0.512438	
mm_73889.1	chr8	119404489	119404689	+	1	NA	NA	NA	9697	NM_019966	56690	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	0.010000	0.497512	
mm_50535.1	chr6	49045729	49045929	+	1	NA	NA	NA	9311	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.010000	0.248756	
mm_147280.1	chr18	39486936	39487136	-	1	NA	NA	NA	209	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.015000	0.562189	
mm_142226.1	chr17	37480641	37480841	-	1	NA	NA	NA	2788	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.000000	0.363184	
mm_141683.1	chr17	33940221	33940421	-	1	NA	NA	NA	9	NM_001185182	14976	Mm.2948	NM_010385	ENSMUSG00000024309	Pfdn6	H-2Ke2|H2-Ke2|Ke-2	prefoldin subunit 6	protein-coding	0.060000	0.502488	
mm_19629.1	chr2	102813636	102813836	-	1	NA	NA	NA	87929	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.005000	0.487562	
mm_120387.1	chr14	64590284	64590484	+	1	NA	NA	NA	-273	NR_029813	387233		NR_029813	ENSMUSG00000065597	Mir124a-1	Mirn124a|Mirn124a-1	microRNA 124a-1	ncRNA	0.070000	0.557214	
mm_11421.1	chr2	31759811	31760011	+	1	NA	NA	NA	-28	NM_009594	11350	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.095000	0.776119	
mm_7643.1	chr1	128102935	128103135	-	1	NA	NA	NA	12	NM_001285945	226409	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0.040000	0.477612	
mm_12550.1	chr2	72405605	72405805	+	1	NA	NA	NA	-70514	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.010000	0.472637	
mm_145911.1	chr18	66458496	66458696	+	1	NA	NA	NA	-8	NM_021451	58801	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.115000	0.656716	
mm_12210.1	chr2	67173789	67173989	+	1	NA	NA	NA	55	NM_001033477	383709	Mm.244520	NM_001033477		Gm1322	-	predicted gene 1322	protein-coding	0.015000	0.422886	
mm_76967.1	chr8	106280887	106281087	-	1	NA	NA	NA	-1242	NR_126091	75044	Mm.445896	NR_126090		4930506A18Rik	-	RIKEN cDNA 4930506A18 gene	ncRNA	0.015000	0.572139	
mm_42.1	chr1	6487275	6487475	+	1	NA	NA	NA	144	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.005000	0.388060	
mm_154179.1	chr19	58744064	58744264	-	1	NA	NA	NA	15277	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.030000	0.487562	
mm_43242.1	chr5	130079344	130079544	+	1	NA	NA	NA	74	NM_001130476	22021	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0.160000	0.771144	
mm_15582.1	chr2	158723361	158723561	+	1	NA	NA	NA	-44638	NM_027975	71878	Mm.85162	NM_027975	ENSMUSG00000027654	Fam83d	2310007D09Rik|BB104611	family with sequence similarity 83, member D	protein-coding	0.010000	0.557214	
mm_122279.1	chr14	34422653	34422853	-	1	NA	NA	NA	47249	NM_153127	105450	Mm.272673	NM_153127	ENSMUSG00000041445	Mmrn2	AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1	multimerin 2	protein-coding	0.000000	0.447761	
mm_137048.1	chr17	17917695	17917895	+	1	NA	NA	NA	29971	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.000000	0.388060	
mm_142673.1	chr17	47730531	47730731	-	1	NA	NA	NA	3789	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.025000	0.572139	
mm_13650.1	chr2	114054303	114054503	+	1	NA	NA	NA	7	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.010000	0.567164	
mm_73718.1	chr8	112011277	112011477	+	1	NA	NA	NA	18	NM_020584	57321	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	0.085000	0.592040	
mm_8312.1	chr1	144245097	144245297	-	1	NA	NA	NA	3907	NM_015811	50778	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.000000	0.487562	
mm_16231.1	chr2	173156050	173156250	+	1	NA	NA	NA	3077	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.030000	0.572139	
mm_22231.1	chr2	174433540	174433740	-	1	NA	NA	NA	5399	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.025000	0.567164	
mm_62729.1	chr7	110783395	110783595	+	1	NA	NA	NA	10891	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.000000	0.402985	-33(GGATATAAAGGG,-,0.00)
mm_106020.1	chr11	116023871	116024071	-	1	NA	NA	NA	533	NM_008211	15081	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0.080000	0.641791	
mm_42618.1	chr5	118027758	118027958	+	1	NA	NA	NA	34	NM_021344	57816	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	0.165000	0.796020	-63(CGCTATAAGAGG,-,0.00)
mm_131077.1	chr16	4726307	4726507	+	1	NA	NA	NA	46	NM_001136066	15369	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.105000	0.706468	
mm_14356.1	chr2	129615440	129615640	+	1	NA	NA	NA	22371	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.020000	0.532338	
mm_32324.1	chr4	103804763	103804963	+	1	NA	NA	NA	422363	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA	0.000000	0.388060	
mm_50777.1	chr6	53680937	53681137	+	1	NA	NA	NA	107663	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.050000	0.636816	
mm_56150.1	chr6	87843400	87843600	-	1	NA	NA	NA	-4741	NM_133934	57905	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	0.010000	0.437811	
mm_3335.1	chr1	137960399	137960599	+	1	NA	NA	NA	-5956	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.000000	0.293532	
mm_57866.1	chr6	129623753	129623953	-	1	NA	NA	NA	11	NM_001083322	27007	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	0.010000	0.388060	
mm_40174.1	chr5	35950788	35950988	+	1	NA	NA	NA	57569	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	0.025000	0.507463	-33(TGCTATAAAAGT,-,0.00)
mm_63633.1	chr7	128523487	128523687	+	1	NA	NA	NA	4	NM_013863	29810	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0.065000	0.621891	
mm_92463.1	chr10	77969724	77969924	-	1	NA	NA	NA	48	NM_138301	28240	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.085000	0.666667	
mm_42998.1	chr5	123400979	123401179	+	1	NA	NA	NA	6281	NM_177582	208104	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.000000	0.393035	
mm_91999.1	chr10	62194105	62194305	-	1	NA	NA	NA	22	NR_106122	102465767		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.020000	0.601990	
mm_121539.1	chr14	122464054	122464254	+	1	NA	NA	NA	1504	NM_022987	65100	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	0.090000	0.651741	
mm_169399.1	chr14	47569303	47569503	+	1	NA	NA	NA	-969	NM_172599	100504663	Mm.287279	NM_172599	ENSMUSG00000037526	Atg14	4832427M01|Atg14L|D14Ertd114e|D14Ertd436e	autophagy related 14	protein-coding	0.065000	0.537313	
mm_107067.1	chr12	16894757	16894957	+	1	NA	NA	NA	-121	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0.200000	0.840796	
mm_147548.1	chr18	54840036	54840236	-	1	NA	NA	NA	150044	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.030000	0.532338	
mm_75141.1	chr8	35415307	35415507	-	1	NA	NA	NA	39666	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.030000	0.497512	
mm_151142.1	chr19	53076143	53076343	+	1	NA	NA	NA	-9	NR_045320	78457	Mm.76932	NR_045320	ENSMUSG00000099988	1700054A03Rik	-	RIKEN cDNA 1700054A03 gene	ncRNA	0.040000	0.482587	
mm_37870.1	chr4	132352124	132352324	-	1	NA	NA	NA	1462	NR_003270	399101	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0.015000	0.398010	
mm_105869.1	chr11	114237110	114237310	-	1	NA	NA	NA	38952	NR_045930	73536	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.005000	0.427861	
mm_12886.1	chr2	84742905	84743105	+	1	NA	NA	NA	-1827	NR_029544	387149		NR_029544	ENSMUSG00000065484	Mir130a	Mirn130|Mirn130a|mir-130a	microRNA 130a	ncRNA	0.070000	0.641791	
mm_37991.1	chr4	133633372	133633572	-	1	NA	NA	NA	-43	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.170000	0.825871	
mm_144455.1	chr18	23352518	23352718	+	1	NA	NA	NA	42598	NM_001285813	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.025000	0.447761	
mm_51352.1	chr6	72556069	72556269	+	1	NA	NA	NA	6522	NM_001271395	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.030000	0.572139	
mm_13160.1	chr2	92599598	92599798	+	1	NA	NA	NA	-9	NM_023850	76969	Mm.38021	NM_023850	ENSMUSG00000027221	Chst1	2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KSGAL6ST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding	0.110000	0.746269	
mm_159677.1	chr4	155992774	155992974	+	1	NA	NA	NA	31	NM_011341	20318	Mm.293517	NM_011341	ENSMUSG00000029076	Sdf4	Cab45	stromal cell derived factor 4	protein-coding	0.160000	0.716418	
mm_156787.1	chrX	162500339	162500539	+	1	NA	NA	NA	143219	NM_001290633	194590	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	0.010000	0.412935	
mm_110298.1	chr12	32568965	32569165	-	1	NA	NA	NA	190276	NM_001162903	72123	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.005000	0.482587	
mm_42612.1	chr5	117976643	117976843	+	1	NA	NA	NA	-27	NM_145564	231670	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	0.110000	0.721393	
mm_128044.1	chr15	25395926	25396126	-	1	NA	NA	NA	17738	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.030000	0.437811	
mm_110623.1	chr12	57181357	57181557	-	1	NA	NA	NA	16015	NM_172577	217593	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0.010000	0.258706	
mm_121027.1	chr14	79703977	79704177	+	1	NA	NA	NA	1157	NR_045060	73989	Mm.107775	NR_045060		4930452G13Rik	-	RIKEN cDNA 4930452G13 gene	ncRNA	0.030000	0.527363	
mm_39109.1	chr4	154928025	154928225	-	1	NA	NA	NA	-48	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.010000	0.502488	
mm_35146.1	chr4	11737978	11738178	-	1	NA	NA	NA	-20079	NM_019753	12557	Mm.33402	NM_019753	ENSMUSG00000028217	Cdh17	HPT-1|HPT-1/LI	cadherin 17	protein-coding	0.015000	0.517413	
mm_80209.1	chr9	72442158	72442358	+	1	NA	NA	NA	3729	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.010000	0.407960	
mm_89891.1	chr10	110745383	110745583	+	1	NA	NA	NA	18	NM_178609	52679	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e	E2F transcription factor 7	protein-coding	0.115000	0.681592	
mm_124259.1	chr14	102977792	102977992	-	1	NA	NA	NA	4740	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.025000	0.373134	
mm_28344.1	chr3	89411767	89411967	-	1	NA	NA	NA	-4	NM_177041	319945	Mm.258142	NM_177041	ENSMUSG00000042642	Flad1	A930017E24Rik|Pp591	flavin adenine dinucleotide synthetase 1	protein-coding	0.030000	0.477612	
mm_54753.1	chr6	41034196	41034396	-	1	NA	NA	NA	1213	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.467662	
mm_153556.1	chr19	42128956	42129156	-	1	NA	NA	NA	-63	NM_027106	69534	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0.070000	0.601990	
mm_132165.1	chr16	32271452	32271652	+	1	NA	NA	NA	-57	NM_183283	69576	Mm.432545	NM_183283	ENSMUSG00000046345	Smco1	2310010M20Rik	single-pass membrane protein with coiled-coil domains 1	protein-coding	0.030000	0.507463	
mm_16707.1	chr2	7083468	7083668	-	1	NA	NA	NA	-2266	NM_001160292	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.010000	0.398010	
mm_38251.1	chr4	136687914	136688114	-	1	NA	NA	NA	65393	NM_001243262	242707	Mm.448979	NM_001243262	ENSMUSG00000070683	Lactbl1	-	lactamase, beta-like 1	protein-coding	0.020000	0.562189	
mm_36458.1	chr4	82505499	82505699	-	1	NA	NA	NA	180	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.105000	0.671642	
mm_85815.1	chr9	110388257	110388457	-	1	NA	NA	NA	19853	NM_001081043	104831	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.015000	0.582090	
mm_91937.1	chr10	60738096	60738296	-	1	NA	NA	NA	14586	NM_023596	71279	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.025000	0.472637	-7(TTTTTTAAAGCT,+,0.00)
mm_126850.1	chr15	89180832	89181032	+	1	NA	NA	NA	-144	NM_138749	140570	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.080000	0.661692	
mm_88772.1	chr10	80336016	80336216	+	1	NA	NA	NA	5971	NM_139292	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.025000	0.542289	
mm_86488.1	chr10	5548617	5548817	+	1	NA	NA	NA	1975	NM_153399	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.010000	0.507463	
mm_90460.1	chr10	127743669	127743869	+	1	NA	NA	NA	4231	NM_198035	320080	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	0.035000	0.567164	
mm_30527.1	chr4	3090305	3090505	+	1	NA	NA	NA	-81678	NM_001167534	100312470	Mm.480297	NM_001167534	ENSMUSG00000094798	Vmn1r2	Gm11776|OTTMUSG00000004179	vomeronasal 1 receptor 2	protein-coding	0.030000	0.378109	
mm_135163.1	chr16	35869088	35869288	-	1	NA	NA	NA	2194	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.010000	0.492537	
mm_166637.1	chr6	82804999	82805199	-	1	NA	NA	NA	-30645	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.005000	0.472637	
mm_173072.1	chrX	136139008	136139208	+	1	NA	NA	NA	63	NM_212457	406217	Mm.336245	NM_212457	ENSMUSG00000047844	Bex4	-	brain expressed X-linked 4	protein-coding	0.110000	0.726368	
mm_101283.1	chr11	21571713	21571913	-	1	NA	NA	NA	121	NM_008618	17449	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	0.055000	0.597015	
mm_144862.1	chr18	36720128	36720328	+	1	NA	NA	NA	6587	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.010000	0.422886	
mm_96499.1	chr11	68431810	68432010	+	1	NA	NA	NA	-215	NM_177320	320207	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik	phosphoinositide-3-kinase, regulatory subunit 5, p101	protein-coding	0.040000	0.577114	
mm_109438.1	chr12	110696514	110696714	+	1	NA	NA	NA	-219	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.130000	0.691542	
mm_150646.1	chr19	41911763	41911963	+	1	NA	NA	NA	-8	NM_023418	18648	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	0.125000	0.671642	
mm_32955.1	chr4	119637633	119637833	+	1	NA	NA	NA	1	NM_008190	14915	Mm.2614	NM_008190	ENSMUSG00000023247	Guca2a	Guca2	guanylate cyclase activator 2a (guanylin)	protein-coding	0.000000	0.552239	-52(CTCTTTAAAAGC,-,0.00),-51(TCTTTAAAAGCC,+,0.00)
mm_140451.1	chr17	88626487	88626687	+	1	NA	NA	NA	32	NM_029858	77057	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.020000	0.507463	
mm_68400.1	chr7	109602581	109602781	-	1	NA	NA	NA	13887	NR_037617	76954	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.010000	0.487562	
mm_8749.1	chr1	160307271	160307471	-	1	NA	NA	NA	-11399	NR_035448	100316784		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	0.010000	0.537313	
mm_163880.1	chr14	21276787	21276987	+	1	NA	NA	NA	200735	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.010000	0.417910	
mm_59482.1	chr7	27462492	27462692	+	1	NA	NA	NA	10174	NM_001290525	233016	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0.040000	0.577114	
mm_102664.1	chr11	64774542	64774742	-	1	NA	NA	NA	-204393	NM_023479	68626	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	0.010000	0.537313	
mm_98283.1	chr11	89060643	89060843	+	1	NA	NA	NA	5	NM_019505	56077	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	0.120000	0.721393	
mm_125309.1	chr15	37517386	37517586	+	1	NA	NA	NA	-58104	NM_001170868	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.015000	0.537313	
mm_60418.1	chr7	44476211	44476411	+	1	NA	NA	NA	5964	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.452736	
mm_151358.1	chr19	55910468	55910668	+	1	NA	NA	NA	15247	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.040000	0.567164	
mm_51287.1	chr6	72304536	72304736	+	1	NA	NA	NA	26	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.010000	0.597015	-59(TACTATAAGAGC,-,0.00)
mm_87875.1	chr10	61595195	61595395	+	1	NA	NA	NA	-189	NM_001177511	237362	Mm.131297	NM_001177511	ENSMUSG00000020090	Npffr1	Gm236|Gpr147|NPFF1|NPFF1R|OT7T022	neuropeptide FF receptor 1	protein-coding	0.130000	0.781095	
mm_159180.1	chr2	111421096	111421296	-	1	NA	NA	NA	-247	NM_207254	277562	Mm.377872	NM_207254	ENSMUSG00000096703	Olfr1286	GA_x5J8B7TU5VU-1563-1372|GA_x6K02T2Q125-72472405-72471488|MOR248-21	olfactory receptor 1286	protein-coding	0.000000	0.398010	
mm_84961.1	chr9	83778991	83779191	-	1	NA	NA	NA	27214	NM_148941	83603	Mm.83949	NM_148941	ENSMUSG00000032262	Elovl4	-	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	protein-coding	0.020000	0.348259	
mm_8503.1	chr1	154116058	154116258	-	1	NA	NA	NA	-85029	NM_001204908	100503355	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	ENSMUSG00000066797|Gm10178|Gm203	zinc finger protein 648	protein-coding	0.015000	0.472637	59(ACTTTTAAGGAG,+,0.00)
mm_163925.1	chr14	47064900	47065100	+	1	NA	NA	NA	-3977	NM_001310544	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.000000	0.422886	
mm_78747.1	chr9	42141984	42142184	+	1	NA	NA	NA	-17795	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.015000	0.492537	
mm_142723.1	chr17	48146209	48146409	-	1	NA	NA	NA	-2	NM_001177896	328829	Mm.466999	NM_177824	ENSMUSG00000073386	9830107B12Rik	Trem5	RIKEN cDNA 9830107B12 gene	protein-coding	0.010000	0.497512	
mm_75869.1	chr8	70763694	70763894	-	1	NA	NA	NA	2869	NM_023065	65972	Mm.30241	NM_023065	ENSMUSG00000031838	Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	0.015000	0.577114	
mm_141454.1	chr17	30398161	30398361	-	1	NA	NA	NA	-2081	NR_030688	623169	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0.000000	0.378109	
mm_54239.1	chr6	28243700	28243900	-	1	NA	NA	NA	17801	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.000000	0.388060	3(AACTCTAAAAGA,-,0.00)
mm_128086.1	chr15	27755375	27755575	-	1	NA	NA	NA	-73933	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.025000	0.497512	-34(TCCTCTTAAAGA,-,0.00),-33(CCTCTTAAAGAG,+,0.00)
mm_131398.1	chr16	14361349	14361549	+	1	NA	NA	NA	-109	NM_008576	17250	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.090000	0.721393	
mm_145209.1	chr18	50030571	50030771	+	1	NA	NA	NA	-22611	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.025000	0.412935	
mm_104010.1	chr11	85139855	85140055	-	1	NA	NA	NA	0	NM_001029934	237898	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0.090000	0.706468	
mm_113228.1	chr13	27196543	27196743	+	1	NA	NA	NA	-17	NM_013766	27372	Mm.291456	NM_013766	ENSMUSG00000017922	Prl3c1	Ghd7|PLP-J|Prlpi|Prlpj|decidualin	prolactin family 3, subfamily c, member 1	protein-coding	0.005000	0.487562	
mm_95731.1	chr11	54626404	54626604	+	1	NA	NA	NA	30358	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.010000	0.388060	
mm_128641.1	chr15	59275124	59275324	-	1	NA	NA	NA	-31724	NR_045613	100416830	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0.005000	0.522388	
mm_135649.1	chr16	52389381	52389581	-	1	NA	NA	NA	63600	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.343284	
mm_36214.1	chr4	62502079	62502279	-	1	NA	NA	NA	21	NM_024257	72748	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0.085000	0.661692	
mm_34469.1	chr4	148160072	148160272	+	1	NA	NA	NA	-78	NR_104374	230903	Mm.220327	NM_173401	ENSMUSG00000029001	Fbxo44	5730411K09|AV001623|FBG3|FBX30|Fbx6a|Fbxo6a	F-box protein 44	protein-coding	0.075000	0.671642	
mm_70497.1	chr8	12756984	12757184	+	1	NA	NA	NA	68	NM_001293667	50770	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	0.190000	0.820896	
mm_114995.1	chr13	97589872	97590072	+	1	NA	NA	NA	29972	NR_046157	328314	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.025000	0.507463	
mm_16505.1	chr2	181292644	181292844	+	1	NA	NA	NA	-4778	NM_198169	229004	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.020000	0.572139	
mm_56531.1	chr6	99523289	99523489	-	1	NA	NA	NA	-2396	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.065000	0.597015	
mm_168900.1	chr12	55080413	55080613	+	1	NA	NA	NA	17	NM_011899	24067	Mm.471968	NM_011899	ENSMUSG00000073079	Srp54a	54kDa|Srp54	signal recognition particle 54A	protein-coding	0.075000	0.606965	
mm_99752.1	chr11	106723131	106723331	+	1	NA	NA	NA	-7950	NM_001305157	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.010000	0.557214	
mm_156708.1	chrX	159627292	159627492	+	1	NA	NA	NA	120	NM_001135727	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.045000	0.517413	
mm_66070.1	chr7	30856094	30856294	-	1	NA	NA	NA	-16	NM_001033316	233080	Mm.291167	NM_001033316	ENSMUSG00000019429	Ffar3	Gm478|Gpr41	free fatty acid receptor 3	protein-coding	0.015000	0.537313	
mm_85813.1	chr9	110388113	110388313	-	1	NA	NA	NA	19997	NM_001081043	104831	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.020000	0.567164	
mm_40277.1	chr5	41762559	41762759	+	1	NA	NA	NA	1561	NM_007524	12020	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0.030000	0.532338	
mm_48752.1	chr5	147957633	147957833	-	1	NA	NA	NA	413	NM_029920	77521	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	0.080000	0.686567	
mm_84753.1	chr9	75559535	75559735	-	1	NA	NA	NA	22	NM_016963	50875	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0.080000	0.626866	
mm_67217.1	chr7	74473227	74473427	-	1	NA	NA	NA	81453	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.005000	0.398010	
mm_121384.1	chr14	118953122	118953322	+	1	NA	NA	NA	15290	NM_008929	100037258	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.035000	0.432836	
mm_64784.1	chr7	5125874	5126074	-	1	NA	NA	NA	-24	NM_009028	19428	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	0.110000	0.716418	-7(GCCTTTAGAGGG,+,0.00)
mm_39260.1	chr5	3554577	3554777	+	1	NA	NA	NA	10844	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.010000	0.368159	
mm_5945.1	chr1	56782121	56782321	-	1	NA	NA	NA	-144770	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	0.045000	0.527363	
mm_47978.1	chr5	135910800	135911000	-	1	NA	NA	NA	22981	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.020000	0.532338	
mm_117603.1	chr13	90089428	90089628	-	1	NA	NA	NA	80	NM_028012	108138	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	0.055000	0.512438	
mm_161586.1	chr16	32644349	32644549	+	1	NA	NA	NA	-194	NM_001110147	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.115000	0.796020	
mm_118923.1	chr14	27000400	27000600	+	1	NA	NA	NA	138	NM_010420	15209	Mm.4802	NM_010420	ENSMUSG00000040726	Hesx1	HES-1|Rpx	homeobox gene expressed in ES cells	protein-coding	0.015000	0.412935	
mm_115450.1	chr13	118714549	118714749	+	1	NA	NA	NA	-50	NM_008002	14165	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	0.020000	0.567164	
mm_124423.1	chr14	118132669	118132869	-	1	NA	NA	NA	-4	NM_029578	76355	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	0.110000	0.646766	
mm_32654.1	chr4	115088768	115088968	+	1	NA	NA	NA	160	NM_001164557	67182	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	0.025000	0.572139	22(CCTTAAATGCCA,+,0.00)
mm_37782.1	chr4	130222238	130222438	-	1	NA	NA	NA	-43	NM_001034872	332942	Mm.387701	NM_001034872	ENSMUSG00000023120	Gm853	OTTMUSG00000009560	predicted gene 853	protein-coding	0.015000	0.552239	
mm_172724.1	chr8	73157747	73157947	-	1	NA	NA	NA	141335	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	0.025000	0.542289	
mm_84160.1	chr9	59542517	59542717	-	1	NA	NA	NA	3077	NM_010421	15211	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.005000	0.388060	
mm_46139.1	chr5	93093028	93093228	-	1	NA	NA	NA	-288	NM_001009818	52398	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.075000	0.661692	
mm_43102.1	chr5	124483075	124483275	+	1	NA	NA	NA	20	NM_029532	76167	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.085000	0.517413	
mm_75830.1	chr8	70506638	70506838	-	1	NA	NA	NA	1	NM_025577	66462	Mm.28242	NM_025577	ENSMUSG00000058833	2810428I15Rik	-	RIKEN cDNA 2810428I15 gene	protein-coding	0.095000	0.651741	
mm_61908.1	chr7	90137498	90137698	+	1	NA	NA	NA	7366	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.323383	
mm_11106.1	chr2	28192878	28193078	+	1	NA	NA	NA	-115	NM_001038613	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.100000	0.711443	
mm_81426.1	chr9	109056933	109057133	+	1	NA	NA	NA	2167	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.010000	0.577114	
mm_113845.1	chr13	47195713	47195913	+	1	NA	NA	NA	1810	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.015000	0.338308	
mm_151422.1	chr19	56826125	56826325	+	1	NA	NA	NA	16	NM_001002238	83561	Mm.247541	NM_031387	ENSMUSG00000025081	Tdrd1	MTR-1	tudor domain containing 1	protein-coding	0.110000	0.701493	
mm_31158.1	chr4	43442307	43442507	+	1	NA	NA	NA	130	NM_011571	21754	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.055000	0.621891	
mm_156036.1	chrX	107542491	107542691	+	1	NA	NA	NA	9	NR_033580	71011	Mm.307348	NR_033580	ENSMUSG00000055700	4933401B06Rik	-	GLE1 RNA export mediator pseudogene	pseudo	0.010000	0.502488	48(GCCTCTAAAATG,-,0.00)
mm_66973.1	chr7	63908499	63908699	-	1	NA	NA	NA	-8258	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.010000	0.572139	
mm_28099.1	chr3	86142550	86142750	-	1	NA	NA	NA	18	NM_016959	20091	Mm.391785	NM_016959	ENSMUSG00000028081	Rps3a1	Rps3a	ribosomal protein S3A1	protein-coding	0.135000	0.636816	
mm_68296.1	chr7	105737269	105737469	-	1	NA	NA	NA	16	NM_133951	101867	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.040000	0.467662	
mm_151197.1	chr19	53537370	53537570	+	1	NA	NA	NA	8152	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.040000	0.527363	
mm_32123.1	chr4	99031368	99031568	+	1	NA	NA	NA	514	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.000000	0.422886	71(GACTTTTAAAAA,-,0.00),85(CATTTTAAAGAC,+,0.00)
mm_51419.1	chr6	78405053	78405253	+	1	NA	NA	NA	-2	NM_009043	19693	Mm.46360	NM_009043	ENSMUSG00000023140	Reg2	RegII	regenerating islet-derived 2	protein-coding	0.010000	0.402985	-31(GCATATAAAAGA,-,0.00)
mm_106283.1	chr11	118202392	118202592	-	1	NA	NA	NA	10250	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.015000	0.616915	
mm_23224.1	chr3	49062338	49062538	+	1	NA	NA	NA	-453338	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo	0.025000	0.467662	
mm_66541.1	chr7	45189460	45189660	-	1	NA	NA	NA	8565	NM_053256	114640	Mm.207078	NM_053256	ENSMUSG00000038300	Pth2	Tifp39|Tip39	parathyroid hormone 2	protein-coding	0.015000	0.646766	
mm_17071.1	chr2	22744898	22745098	-	1	NA	NA	NA	-29329	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.065000	0.532338	
mm_45394.1	chr5	66151238	66151438	-	1	NA	NA	NA	-360	NM_178446	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.035000	0.577114	
mm_143810.1	chr17	83654626	83654826	-	1	NA	NA	NA	-22831	NM_153512	225030	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.025000	0.492537	
mm_50707.1	chr6	52158375	52158575	+	1	NA	NA	NA	-49	NR_131181	105242658	Mm.372521	NR_131181	ENSMUSG00000087658	Hotairm1	Gm15051|Hoxaas1|OTTMUSG00000018870	Hoxa transcript antisense RNA, myeloid-specific 1	ncRNA	0.100000	0.661692	-30(GCATTTAAATCC,+,0.00)
mm_15102.1	chr2	153346539	153346739	+	1	NA	NA	NA	500	NM_001039939	228790	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0.080000	0.681592	
mm_46659.1	chr5	108675250	108675450	-	1	NA	NA	NA	15	NM_174870	231583	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0.010000	0.507463	
mm_33489.1	chr4	130823020	130823220	+	1	NA	NA	NA	30583	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.005000	0.557214	
mm_7127.1	chr1	90969350	90969550	-	1	NA	NA	NA	170	NM_008998	19329	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	0.020000	0.592040	
mm_91286.1	chr10	24805929	24806129	-	1	NA	NA	NA	30166	NM_134005	209558	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	0.035000	0.492537	
mm_8974.1	chr1	165377571	165377771	-	1	NA	NA	NA	75048	NM_001310430	240888	Mm.329929	NM_001081126	ENSMUSG00000040836	Gpr161	Gm208|Gm208Gpr|vl	G protein-coupled receptor 161	protein-coding	0.000000	0.363184	
mm_41285.1	chr5	90462647	90462847	+	1	NA	NA	NA	1877	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.020000	0.472637	
mm_146526.1	chr18	4353322	4353522	-	1	NA	NA	NA	-125	NR_040328	73915	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0.090000	0.656716	
mm_157214.1	chrX	12994426	12994626	-	1	NA	NA	NA	-47489	NR_038158	70489	Mm.383563	NR_038158	ENSMUSG00000087424	5730405O15Rik	-	RIKEN cDNA 5730405O15 gene	ncRNA	0.035000	0.532338	
mm_53010.1	chr6	123274576	123274776	+	1	NA	NA	NA	12569	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.005000	0.412935	
mm_115.1	chr1	9788302	9788502	+	1	NA	NA	NA	-9728	NM_133220	170755	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.010000	0.393035	
mm_23478.1	chr3	60481106	60481306	+	1	NA	NA	NA	8376	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.452736	
mm_31037.1	chr4	40970891	40971091	+	1	NA	NA	NA	48	NM_023739	74164	Mm.247456	NM_023739	ENSMUSG00000028423	Nfx1	1300017N15Rik|3000003M19Rik|NFX.1|TEG-42|Tex42	nuclear transcription factor, X-box binding 1	protein-coding	0.110000	0.691542	
mm_49096.1	chr6	7844685	7844885	+	1	NA	NA	NA	-439	NM_052993	94192	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.180000	0.825871	
mm_133757.1	chr16	94454332	94454532	+	1	NA	NA	NA	72197	NM_007834	13185	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	Down syndrome critical region gene 3	protein-coding	0.005000	0.452736	
mm_96127.1	chr11	60778824	60779024	+	1	NA	NA	NA	1399	NM_175491	237782	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	0.010000	0.487562	
mm_30503.1	chr3	158016253	158016453	-	1	NA	NA	NA	15401	NM_001093753	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.045000	0.542289	
mm_157546.1	chrX	51219971	51220171	-	1	NA	NA	NA	-14081	NM_134163	171170	Mm.295324	NM_134163	ENSMUSG00000036109	Mbnl3	A530038J18Rik|AI661274|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL	muscleblind-like 3 (Drosophila)	protein-coding	0.030000	0.442786	
mm_81804.1	chr9	116208488	116208688	+	1	NA	NA	NA	-33225	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.030000	0.507463	
mm_38379.1	chr4	138725134	138725334	-	1	NA	NA	NA	31	NR_104373	212190	Mm.292226	NM_178671	ENSMUSG00000043621	Ubxn10	5730509E04Rik|A830047D02|Ubxd3	UBX domain protein 10	protein-coding	0.050000	0.656716	
mm_37007.1	chr4	111898610	111898810	-	1	NA	NA	NA	4086	NM_145551	230612	Mm.26630	NM_145551	ENSMUSG00000028544	Slc5a9	AI159731|SGLT4	solute carrier family 5 (sodium/glucose cotransporter), member 9	protein-coding	0.015000	0.467662	
mm_159534.1	chr4	73790539	73790739	-	1	NA	NA	NA	-37	NM_001017427	242505	Mm.389582	NM_001017427	ENSMUSG00000043003	Rasef	BC030882|RAB45	RAS and EF hand domain containing	protein-coding	0.105000	0.621891	
mm_43478.1	chr5	136697708	136697908	+	1	NA	NA	NA	3631	NM_001085387	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.025000	0.587065	73(CACTTTAAGAGG,-,0.00),74(ACTTTAAGAGGC,+,0.00)
mm_138860.1	chr17	42508328	42508528	+	1	NA	NA	NA	102885	NM_181753	353344	Mm.184937	NM_181753	ENSMUSG00000043972	Opn5	Gpr136|Neuropsin|PGR12|TMEM13	opsin 5	protein-coding	0.005000	0.378109	9(CCTTTAATATGA,+,0.00)
mm_45954.1	chr5	90461662	90461862	-	1	NA	NA	NA	892	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.363184	-80(GTGTTTTAAAAC,-,0.00)
mm_150046.1	chr19	29380289	29380489	+	1	NA	NA	NA	12951	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.025000	0.507463	
mm_88433.1	chr10	77530327	77530527	+	1	NA	NA	NA	79	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.020000	0.572139	
mm_104532.1	chr11	96295306	96295506	-	1	NA	NA	NA	-3765	NM_008269	15414	Mm.215	NM_008269	ENSMUSG00000000690	Hoxb6	Hox-2.2	homeobox B6	protein-coding	0.050000	0.427861	
mm_136343.1	chr16	92603160	92603360	-	1	NA	NA	NA	94069	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.020000	0.452736	
mm_22956.1	chr3	32397182	32397382	+	1	NA	NA	NA	-31617	NM_009517	22401	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0.170000	0.810945	
mm_57067.1	chr6	122577825	122578025	-	1	NA	NA	NA	24116	NM_009645	11628	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.010000	0.333333	
mm_94766.1	chr11	21238617	21238817	+	1	NA	NA	NA	-315	NM_139061	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.125000	0.726368	
mm_132967.1	chr16	50783339	50783539	+	1	NA	NA	NA	30	NR_131005	78639	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0.025000	0.487562	
mm_84318.1	chr9	63757791	63757991	-	1	NA	NA	NA	103	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.135000	0.731343	
mm_124988.1	chr15	21410687	21410887	+	1	NA	NA	NA	299335	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.000000	0.348259	
mm_161910.1	chr18	62741272	62741472	-	1	NA	NA	NA	15	NM_001168423	100038417	Mm.387557	NM_001168423	ENSMUSG00000073551	Spink13	ENSMUSG00000073551|Gm10534|Spink5l3	serine peptidase inhibitor, Kazal type 13	protein-coding	0.015000	0.452736	
mm_102873.1	chr11	69409302	69409502	-	1	NA	NA	NA	4273	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.065000	0.686567	
mm_142670.1	chr17	47729261	47729461	-	1	NA	NA	NA	2519	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.020000	0.587065	
mm_159389.1	chr3	92316605	92316805	+	1	NA	NA	NA	0	NM_011469	20756	Mm.445310	NM_011469	ENSMUSG00000050092	Sprr2b	-	small proline-rich protein 2B	protein-coding	0.005000	0.482587	-32(TCCTATAAAAAA,-,0.00)
mm_88688.1	chr10	80116150	80116350	+	1	NA	NA	NA	447	NM_001301854	20869	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.180000	0.781095	
mm_105220.1	chr11	102218737	102218937	-	1	NA	NA	NA	11313	NR_106179	102465892		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0.025000	0.646766	
mm_105426.1	chr11	103749722	103749922	-	1	NA	NA	NA	-1	NM_011719	22412	Mm.215161	NM_011719	ENSMUSG00000018486	Wnt9b	Wnt14b|Wnt15|clf|clf1|wnt-14b|wnt-15	wingless-type MMTV integration site family, member 9B	protein-coding	0.140000	0.766169	
mm_17733.1	chr2	32567551	32567751	-	1	NA	NA	NA	-3207	NM_010073	13481	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0.010000	0.582090	
mm_135810.1	chr16	57391442	57391642	-	1	NA	NA	NA	38265	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.125000	0.716418	
mm_26083.1	chr3	136672998	136673198	+	1	NA	NA	NA	3032	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.005000	0.373134	
mm_162951.1	chr11	3515964	3516164	+	1	NA	NA	NA	1380	NM_053267	114679	Mm.34046	NM_053267	ENSMUSG00000075702	Selenom	1500040L08Rik|A230103K18|Selm|Sepm	selenoprotein M	protein-coding	0.015000	0.517413	
mm_63139.1	chr7	123124098	123124298	+	1	NA	NA	NA	313	NM_144925	233833	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0.140000	0.761194	
mm_120711.1	chr14	71903543	71903743	+	1	NA	NA	NA	46934	NR_046274	74667	Mm.159286	NR_046274		4930434J06Rik	-	RIKEN cDNA 4930434J06 gene	ncRNA	0.000000	0.363184	2(GTTTTTAGAGTA,+,0.00)
mm_144681.1	chr18	34759455	34759655	+	1	NA	NA	NA	649	NM_175104	66306	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	0.095000	0.671642	-36(CGCCTTTTAAGG,-,0.00),-35(GCCTTTTAAGGG,-,0.00),-34(CCTTTTAAGGGC,+,0.00)
mm_108995.1	chr12	102949157	102949357	+	1	NA	NA	NA	398	NM_001081017	217843	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	0.075000	0.621891	
mm_141719.1	chr17	34031573	34031773	-	1	NA	NA	NA	17	NM_001077709	14977	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	0.120000	0.701493	
mm_156727.1	chrX	159901629	159901829	+	1	NA	NA	NA	-40964	NM_001290661	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.035000	0.482587	
mm_2544.1	chr1	107511430	107511630	+	1	NA	NA	NA	20	NM_011111	18788	Mm.271870	NM_011111	ENSMUSG00000062345	Serpinb2	PAI-2|Planh2|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 2	protein-coding	0.025000	0.417910	
mm_165277.1	chr2	80025620	80025820	-	1	NA	NA	NA	103251	NM_016744	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.005000	0.398010	
mm_36122.1	chr4	58912556	58912756	-	1	NA	NA	NA	69	NM_172381	230249	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|mKIAA0368	expressed sequence AI314180	protein-coding	0.140000	0.716418	
mm_4993.1	chr1	191817346	191817546	+	1	NA	NA	NA	-4027	NM_010892	18005	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0.025000	0.482587	
mm_17144.1	chr2	25196492	25196692	-	1	NA	NA	NA	221	NM_146115	227612	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0.015000	0.552239	
mm_166559.1	chr6	43680303	43680503	+	1	NA	NA	NA	-14125	NM_013861	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.020000	0.358209	
mm_125544.1	chr15	58415384	58415584	+	1	NA	NA	NA	16	NM_145959	210998	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.120000	0.701493	
mm_80146.1	chr9	70913983	70914183	+	1	NA	NA	NA	20725	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.005000	0.492537	-32(GCTTTTAAATGA,+,0.00)
mm_8997.1	chr1	165722505	165722705	-	1	NA	NA	NA	-14511	NM_001038846	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.015000	0.487562	
mm_114033.1	chr13	52677219	52677419	+	1	NA	NA	NA	79886	NR_027893	105404	Mm.184173	NR_027893		BB123696	-	expressed sequence BB123696	ncRNA	0.010000	0.512438	
mm_49224.1	chr6	15794188	15794388	+	1	NA	NA	NA	73627	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.000000	0.333333	-90(GCTTCTTAAAGG,-,0.00),-36(ACCCATAAAAAC,-,0.00)
mm_95301.1	chr11	46123022	46123222	+	1	NA	NA	NA	-4782	NM_001311209	11492	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.010000	0.562189	
mm_168358.1	chr1	114557203	114557403	+	1	NA	NA	NA	-1127834	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.045000	0.517413	
mm_71346.1	chr8	45627965	45628165	+	1	NA	NA	NA	314	NM_001310707	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.040000	0.601990	-33(GGTTCTAAAGGG,-,0.00)
mm_42138.1	chr5	111330655	111330855	+	1	NA	NA	NA	58	NM_001301666	56305	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0.135000	0.716418	
mm_135068.1	chr16	34223094	34223294	-	1	NA	NA	NA	-256191	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.010000	0.457711	
mm_160323.1	chr7	145314649	145314849	+	1	NA	NA	NA	-86	NM_203490	211578	Mm.370299	NM_203490	ENSMUSG00000051207	Mrgprd	Gm499|Mgrd|MrgD|TGR7	MAS-related GPR, member D	protein-coding	0.010000	0.502488	
mm_16236.1	chr2	173156223	173156423	+	1	NA	NA	NA	3250	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.020000	0.507463	
mm_7258.1	chr1	93801793	93801993	-	1	NA	NA	NA	41	NM_023136	21915	Mm.250332	NM_023136	ENSMUSG00000026281	Dtymk	AU044245|CDC8|D10Ertd203e|TMPK|TYPK|Tmk|mtmk	deoxythymidylate kinase	protein-coding	0.100000	0.626866	
mm_47102.1	chr5	118380393	118380593	-	1	NA	NA	NA	135266	NM_001081236	76792	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0.020000	0.547264	
mm_63724.1	chr7	130861147	130861347	+	1	NA	NA	NA	-4477	NM_001346515	101476	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.005000	0.452736	
mm_127570.1	chr15	102279361	102279561	+	1	NA	NA	NA	5	NM_134100	106073	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0.115000	0.741294	
mm_168843.1	chr12	23634633	23634833	-	1	NA	NA	NA	462536	NM_001256489	66808	Mm.379124	NM_001256489	ENSMUSG00000073158	9030624G23Rik	-	RIKEN cDNA 9030624G23 gene	protein-coding	0.110000	0.731343	
mm_126100.1	chr15	78244709	78244909	+	1	NA	NA	NA	-2	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.010000	0.597015	
mm_48631.1	chr5	145138271	145138471	-	1	NA	NA	NA	1718	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.010000	0.472637	
mm_118659.1	chr14	21797884	21798084	+	1	NA	NA	NA	-33577	NM_011695	22334	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0.000000	0.383085	
mm_24361.1	chr3	90079431	90079631	+	1	NA	NA	NA	10	NM_001293749	59069	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0.075000	0.631841	-67(CCTTTACTGGAC,+,0.00)
mm_154806.1	chrX	13622823	13623023	+	1	NA	NA	NA	-9846	NM_011823	23890	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	0.015000	0.477612	
mm_170265.1	chr18	17352575	17352775	-	1	NA	NA	NA	-117193	NR_033607	664619	Mm.250005	NR_033607		4921533I20Rik	-	PRP18 pre-mRNA processing factor 18 homolog pseudogene	pseudo	0.040000	0.457711	-88(CCTTTTATGAGT,+,0.00)
mm_45737.1	chr5	86468998	86469198	-	1	NA	NA	NA	-108	NM_001033233	194597	Mm.249106	NM_001033233	ENSMUSG00000072845	Tmprss11a	Gm7	transmembrane protease, serine 11a	protein-coding	0.020000	0.422886	
mm_15121.1	chr2	153757967	153758167	+	1	NA	NA	NA	16780	NM_007896	13589	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	0.015000	0.422886	
mm_36834.1	chr4	106464074	106464274	-	1	NA	NA	NA	151	NM_153565	100102	Mm.133268	NM_153565	ENSMUSG00000044254	Pcsk9	AI415265|AI747682|FH3|HCHOLA3|Narc1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding	0.070000	0.597015	
mm_86109.1	chr9	115310444	115310644	-	1	NA	NA	NA	-123	NM_024222	68292	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0.100000	0.716418	
mm_120894.1	chr14	75845202	75845402	+	1	NA	NA	NA	46	NM_009429	22070	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	0.160000	0.751244	-4(CTCTATATGAGG,-,0.00)
mm_159850.1	chr5	137291247	137291447	+	1	NA	NA	NA	-2433	NR_106196	102466887		NR_106196	ENSMUSG00000099145	Mir8116	Gm27485|mmu-mir-8116	microRNA 8116	ncRNA	0.030000	0.512438	
mm_24787.1	chr3	95545238	95545438	+	1	NA	NA	NA	-14339	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.020000	0.577114	
mm_159916.1	chr6	49395408	49395608	+	1	NA	NA	NA	-96	NM_029916	77485	Mm.128054	NM_029916	ENSMUSG00000023403	Stk31	C330007K24Rik	serine threonine kinase 31	protein-coding	0.120000	0.726368	
mm_133856.1	chr16	96273404	96273604	+	1	NA	NA	NA	-7528	NM_033149	93961	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	0.010000	0.542289	
mm_76160.1	chr8	82372061	82372261	-	1	NA	NA	NA	30425	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.015000	0.422886	
mm_15245.1	chr2	154664501	154664701	+	1	NA	NA	NA	7575	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.005000	0.383085	
mm_170660.1	chr2	11180444	11180644	+	1	NA	NA	NA	8162	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.005000	0.412935	
mm_72849.1	chr8	88320551	88320751	+	1	NA	NA	NA	26447	NM_001037724	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.015000	0.552239	
mm_102383.1	chr11	58904063	58904263	-	1	NA	NA	NA	62	NM_011758	22698	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	0.090000	0.681592	
mm_140700.1	chr17	14252607	14252807	-	1	NA	NA	NA	-26799	NM_022315	64074	Mm.30162	NM_022315	ENSMUSG00000023886	Smoc2	1700056C05Rik|5430426J21Rik|Smoc2l	SPARC related modular calcium binding 2	protein-coding	0.015000	0.547264	
mm_26244.1	chr3	141491436	141491636	+	1	NA	NA	NA	25972	NM_001293561	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.005000	0.368159	
mm_156389.1	chrX	139800703	139800903	+	1	NA	NA	NA	-5	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.010000	0.432836	
mm_26462.1	chr3	143973651	143973851	+	1	NA	NA	NA	228581	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.035000	0.482587	
mm_53014.1	chr6	123282655	123282855	+	1	NA	NA	NA	7116	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.005000	0.313433	
mm_172411.1	chr7	19083873	19084073	+	1	NA	NA	NA	124	NM_001190491	13400	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	0.040000	0.681592	
mm_78340.1	chr9	25288183	25288383	+	1	NA	NA	NA	35844	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.020000	0.388060	
mm_95279.1	chr11	45856270	45856470	+	1	NA	NA	NA	4406	NM_001045520	216705	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.015000	0.442786	
mm_171633.1	chr4	19766971	19767171	-	1	NA	NA	NA	-51656	NM_028746	74087	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0.055000	0.572139	
mm_62841.1	chr7	114139553	114139753	+	1	NA	NA	NA	-21872	NM_025846	66922	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.015000	0.467662	
mm_71490.1	chr8	46749359	46749559	+	1	NA	NA	NA	9714	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.010000	0.437811	
mm_56725.1	chr6	115644443	115644643	-	1	NA	NA	NA	32092	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.025000	0.477612	
mm_73016.1	chr8	93968775	93968975	+	1	NA	NA	NA	43765	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.005000	0.502488	
mm_93577.1	chr10	116896580	116896780	-	1	NA	NA	NA	199	NM_001033333	237558	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	0.010000	0.522388	
mm_141293.1	chr17	28079661	28079861	-	1	NA	NA	NA	823	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.050000	0.587065	
mm_137559.1	chr17	27658397	27658597	+	1	NA	NA	NA	2906	NM_001286743	23969	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.000000	0.467662	
mm_131677.1	chr16	20673471	20673671	+	1	NA	NA	NA	844	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.045000	0.616915	
mm_2567.1	chr1	118389375	118389575	+	1	NA	NA	NA	417	NM_001293301	76707	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	0.050000	0.487562	
mm_160386.1	chr8	46293678	46293878	-	1	NA	NA	NA	893	NM_173789	234219	Mm.145631	NM_173789	ENSMUSG00000047171	Helt	A830086M02|Hesl|Heslike|Mgn|megane	helt bHLH transcription factor	protein-coding	0.035000	0.611940	
mm_168103.1	chr10	13893323	13893523	+	1	NA	NA	NA	-24466	NM_001347362	66253	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	0.070000	0.671642	
mm_37026.1	chr4	114925967	114926167	-	1	NA	NA	NA	-54	NM_015758	30923	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	0.070000	0.671642	-35(GTCCATATAAGG,-,0.00),-33(CCATATAAGGCG,+,0.00)
mm_167275.1	chr8	34055773	34055973	-	1	NA	NA	NA	51941	NM_001293758	22428	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.025000	0.512438	
mm_157429.1	chrX	38564941	38565141	-	1	NA	NA	NA	11155	NM_028288	72584	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	0.060000	0.651741	
mm_56964.1	chr6	120038529	120038729	-	1	NA	NA	NA	26	NM_001199083	232341	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0.090000	0.661692	-34(CGCCATTTAAAG,-,0.00),-32(CCATTTAAAGCG,+,0.00)
mm_48444.1	chr5	140648859	140649059	-	1	NA	NA	NA	72	NM_001308040	78339	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.145000	0.800995	
mm_52876.1	chr6	122365812	122366012	+	1	NA	NA	NA	-25685	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.005000	0.547264	-34(CACTATAAAAGG,-,0.00)
mm_129651.1	chr15	80743563	80743763	-	1	NA	NA	NA	32350	NM_144812	213988	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.010000	0.412935	
mm_41220.1	chr5	88583505	88583705	+	1	NA	NA	NA	92	NM_027530	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.015000	0.373134	
mm_61642.1	chr7	80343077	80343277	+	1	NA	NA	NA	40	NM_026812	68695	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	0.080000	0.611940	
mm_152381.1	chr19	10240669	10240869	-	1	NA	NA	NA	-21	NM_001033481	225908	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.145000	0.786070	
mm_47408.1	chr5	123132492	123132692	-	1	NA	NA	NA	37	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.030000	0.552239	
mm_94463.1	chr11	6474622	6474822	+	1	NA	NA	NA	1354	NM_011221	19291	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0.015000	0.407960	
mm_48499.1	chr5	142815252	142815452	-	1	NA	NA	NA	2035	NM_178242	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.125000	0.686567	
mm_39082.1	chr4	154471194	154471394	-	1	NA	NA	NA	165073	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	0.015000	0.532338	
mm_79697.1	chr9	60837626	60837826	+	1	NA	NA	NA	43178	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.020000	0.532338	
mm_132695.1	chr16	43299219	43299419	+	1	NA	NA	NA	52035	NM_019778	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.010000	0.442786	
mm_54283.1	chr6	29216185	29216385	-	1	NA	NA	NA	79	NM_001302933	23917	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine 5'-phosphate dehydrogenase 1	protein-coding	0.095000	0.711443	
mm_138325.1	chr17	34850357	34850557	+	1	NA	NA	NA	66	NM_001045864	27632	Mm.653	NM_138580	ENSMUSG00000024369	Nelfe	D17H6S45|NELF-E|RD|Rdbp	negative elongation factor complex member E, Rdbp	protein-coding	0.145000	0.721393	
mm_93461.1	chr10	110802509	110802709	-	1	NA	NA	NA	57144	NM_178609	52679	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e	E2F transcription factor 7	protein-coding	0.005000	0.467662	
mm_21377.1	chr2	157376348	157376548	-	1	NA	NA	NA	8854	NM_026968	69161	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	0.030000	0.507463	
mm_40420.1	chr5	53414052	53414252	+	1	NA	NA	NA	-141627	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.005000	0.398010	
mm_156071.1	chrX	109161294	109161494	+	1	NA	NA	NA	-35362	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.010000	0.303483	
mm_39209.1	chr4	156050667	156050867	-	1	NA	NA	NA	50	NM_029264	330010	Mm.440232	NM_029264	ENSMUSG00000029074	Ttll10	4833412E22Rik|4930595O22Rik|AU022799|BC042775|Ttll5	tubulin tyrosine ligase-like family, member 10	protein-coding	0.005000	0.522388	
mm_110169.1	chr12	27335959	27336159	-	1	NA	NA	NA	6659	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.015000	0.447761	
mm_7956.1	chr1	133921301	133921501	-	1	NA	NA	NA	0	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.010000	0.606965	
mm_28127.1	chr3	86999209	86999409	-	1	NA	NA	NA	31	NM_007639	12479	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0.050000	0.547264	
mm_147133.1	chr18	36197273	36197473	-	1	NA	NA	NA	-213	NM_001167891	100042150	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0.090000	0.731343	
mm_44708.1	chr5	30888691	30888891	-	1	NA	NA	NA	-61	NM_174849	231093	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0.085000	0.626866	
mm_62295.1	chr7	100005921	100006121	+	1	NA	NA	NA	-383	NM_133709	69121	Mm.285295	NM_133709	ENSMUSG00000030732	Chrdl2	1810022C01Rik|Chl2	chordin-like 2	protein-coding	0.105000	0.691542	
mm_30096.1	chr3	138282633	138282833	-	1	NA	NA	NA	5088	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.035000	0.532338	
mm_77843.1	chr9	5299309	5299509	+	1	NA	NA	NA	892	NM_009807	12362	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.005000	0.373134	44(GTCTCTAAAAAA,-,0.00)
mm_158976.1	chr1	119836736	119836936	-	1	NA	NA	NA	235	NM_019933	19258	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	0.095000	0.621891	
mm_3571.1	chr1	150496780	150496980	+	1	NA	NA	NA	-30715	NM_001110146	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.010000	0.407960	
mm_87012.1	chr10	26885239	26885439	+	1	NA	NA	NA	112827	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.020000	0.422886	
mm_25258.1	chr3	104781036	104781236	+	1	NA	NA	NA	80	NM_027982	71887	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	0.080000	0.691542	
mm_85284.1	chr9	99709870	99710070	-	1	NA	NA	NA	93	NM_019815	56492	Mm.386784	NM_019815	ENSMUSG00000032473	Cldn18	-	claudin 18	protein-coding	0.040000	0.646766	
mm_146848.1	chr18	23987159	23987359	-	1	NA	NA	NA	-2375	NM_011755	22694	Mm.290596	NM_011755	ENSMUSG00000063281	Zfp35	Zfp-35|Znf271|mszf13|mszf20-1|mszf28|mszf68	zinc finger protein 35	protein-coding	0.055000	0.582090	-85(ACCCCTAAAAGG,-,0.00),-83(CCCTAAAAGGGC,+,0.00)
mm_70520.1	chr8	12949350	12949550	+	1	NA	NA	NA	32	NM_001159485	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.025000	0.532338	
mm_107508.1	chr12	40038228	40038428	+	1	NA	NA	NA	-341	NM_001039515	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.035000	0.572139	
mm_131176.1	chr16	7069781	7069981	+	1	NA	NA	NA	46	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.010000	0.457711	
mm_95529.1	chr11	52232175	52232375	+	1	NA	NA	NA	280	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.115000	0.701493	
mm_115942.1	chr13	23698358	23698558	-	1	NA	NA	NA	0	NM_178208	319155	Mm.261662	NM_178208	ENSMUSG00000060678	Hist1h4c	-	histone cluster 1, H4c	protein-coding	0.060000	0.547264	-34(GCCTATTTAAAG,-,0.00),-32(CTATTTAAAGGG,+,0.00),-32(CTATTTAAAGGG,-,0.00)
mm_148984.1	chr19	8591189	8591389	+	1	NA	NA	NA	35	NM_031194	19879	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	0.015000	0.507463	
mm_8496.1	chr1	153851071	153851271	-	1	NA	NA	NA	24	NM_178243	240817	Mm.439405	NM_178243	ENSMUSG00000045968	Teddm2	5830403L16Rik|AJ554213|Me9|e92	transmembrane epididymal family member 2	protein-coding	0.010000	0.507463	
mm_150661.1	chr19	41981531	41981731	+	1	NA	NA	NA	-132	NM_145500	226122	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0.095000	0.776119	
mm_54993.1	chr6	48770727	48770927	-	1	NA	NA	NA	24	NM_031247	83408	Mm.333050	NM_031247	ENSMUSG00000039264	Gimap3	2010110D23Rik|Gimap5|Ian4	GTPase, IMAP family member 3	protein-coding	0.010000	0.457711	
mm_72633.1	chr8	84664452	84664652	+	1	NA	NA	NA	-1700	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.015000	0.402985	
mm_17890.1	chr2	35035905	35036105	-	1	NA	NA	NA	25436	NM_010406	15139	Mm.2168	NM_010406	ENSMUSG00000026874	Hc	C5|C5a|He	hemolytic complement	protein-coding	0.015000	0.447761	
mm_22652.1	chr3	14870016	14870216	+	1	NA	NA	NA	6578	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.030000	0.577114	
mm_133007.1	chr16	55973751	55973951	+	1	NA	NA	NA	47	NM_173026	271377	Mm.282814	NM_173026	ENSMUSG00000022601	Zbtb11	9230110G02Rik|ZNF-U69274	zinc finger and BTB domain containing 11	protein-coding	0.130000	0.731343	
mm_143670.1	chr17	79895945	79896145	-	1	NA	NA	NA	78	NM_178050	56298	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.130000	0.686567	
mm_147866.1	chr18	64457201	64457401	-	1	NA	NA	NA	31765	NM_007998	14151	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0.020000	0.512438	
mm_129805.1	chr15	82987584	82987784	-	1	NA	NA	NA	-28388	NR_037241	100526477		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	0.020000	0.482587	
mm_164250.1	chr15	97979126	97979326	+	1	NA	NA	NA	14997	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.020000	0.567164	
mm_125548.1	chr15	58509945	58510145	+	1	NA	NA	NA	94577	NM_145959	210998	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.005000	0.492537	
mm_73021.1	chr8	94010431	94010631	+	1	NA	NA	NA	2109	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.010000	0.437811	
mm_83686.1	chr9	50528570	50528770	-	1	NA	NA	NA	-29	NM_011220	19286	Mm.35856	NM_011220	ENSMUSG00000032067	Pts	PTPS	6-pyruvoyl-tetrahydropterin synthase	protein-coding	0.145000	0.696517	
mm_57338.1	chr6	124746596	124746796	-	1	NA	NA	NA	-5617	NM_013535	14790	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.010000	0.582090	-6(GGGTCTTTAAGG,-,0.00),-4(GTCTTTAAGGCC,+,0.00)
mm_13375.1	chr2	103612264	103612464	+	1	NA	NA	NA	46054	NM_178890	99382	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.000000	0.383085	-6(TTTTTTAAGGAC,+,0.00)
mm_114297.1	chr13	59133277	59133477	+	1	NA	NA	NA	325680	NM_001025074	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.015000	0.437811	
mm_169942.1	chr16	66559495	66559695	-	1	NA	NA	NA	-97523	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0.070000	0.522388	-31(GGTTATAAAAGC,-,0.00)
mm_172854.1	chr9	38637209	38637409	+	1	NA	NA	NA	10213	NM_146785	258781	Mm.223210	NM_146785	ENSMUSG00000057444	Olfr915	MOR167-4	olfactory receptor 915	protein-coding	0.030000	0.487562	-28(CTTTAAATACCC,+,0.00)
mm_105167.1	chr11	101774087	101774287	-	1	NA	NA	NA	11123	NM_008815	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.025000	0.646766	
mm_48387.1	chr5	139813114	139813314	-	1	NA	NA	NA	29	NM_144914	231832	Mm.482655	NM_144914	ENSMUSG00000036687	Tmem184a	Sdmg1	transmembrane protein 184a	protein-coding	0.030000	0.646766	
mm_122146.1	chr14	31188743	31188943	-	1	NA	NA	NA	17983	NM_022656	64652	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1	nischarin	protein-coding	0.010000	0.487562	-82(CCCCTTTAATGC,-,0.00),-80(CCTTTAATGCAA,+,0.00)
mm_16979.1	chr2	18028656	18028856	-	1	NA	NA	NA	1507	NR_028378	100034739	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	0.055000	0.636816	
mm_49428.1	chr6	29272349	29272549	+	1	NA	NA	NA	-39	NM_001190461	69573	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.065000	0.611940	
mm_146886.1	chr18	25753491	25753691	-	1	NA	NA	NA	392	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.080000	0.552239	
mm_128048.1	chr15	25751516	25751716	-	1	NA	NA	NA	-91682	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.025000	0.492537	
mm_42549.1	chr5	116230349	116230549	+	1	NA	NA	NA	58536	NM_177759	269693	Mm.10946	NM_177759	ENSMUSG00000043913	Ccdc60	AU018954|C130098D09	coiled-coil domain containing 60	protein-coding	0.005000	0.502488	
mm_46032.1	chr5	91807024	91807224	-	1	NA	NA	NA	-39824	NR_045383	73452	Mm.396233	NR_045383	ENSMUSG00000101978	1700063O14Rik	-	RIKEN cDNA 1700063O14 gene	ncRNA	0.040000	0.522388	
mm_83075.1	chr9	37669063	37669263	-	1	NA	NA	NA	59	NM_172454	208098	Mm.217159	NM_172454	ENSMUSG00000011118	Panx3	3230401P04|4833413G11Rik	pannexin 3	protein-coding	0.010000	0.522388	
mm_15457.1	chr2	157426274	157426474	+	1	NA	NA	NA	2081	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.005000	0.542289	
mm_96230.1	chr11	62550733	62550933	+	1	NA	NA	NA	-338	NM_011664	22187	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.035000	0.597015	
mm_75774.1	chr8	69995999	69996199	-	1	NA	NA	NA	285	NM_001286450	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.200000	0.800995	
mm_131861.1	chr16	23107322	23107522	+	1	NA	NA	NA	25	NM_001347179	13682	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0.145000	0.741294	
mm_57777.1	chr6	129237967	129238167	-	1	NA	NA	NA	-22	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.015000	0.492537	
mm_29396.1	chr3	108904442	108904642	-	1	NA	NA	NA	7162	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.080000	0.547264	
mm_87223.1	chr10	40386288	40386488	+	1	NA	NA	NA	37080	NM_001291816	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.020000	0.432836	-33(GAATATAAATGG,-,0.00)
mm_64982.1	chr7	16915562	16915762	-	1	NA	NA	NA	8370	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.020000	0.572139	
mm_115849.1	chr13	21287429	21287629	-	1	NA	NA	NA	5157	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.025000	0.507463	
mm_78444.1	chr9	32224018	32224218	+	1	NA	NA	NA	-131	NM_177379	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.005000	0.492537	
mm_104433.1	chr11	94951486	94951686	-	1	NA	NA	NA	15362	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.030000	0.567164	
mm_32780.1	chr4	116708480	116708680	+	1	NA	NA	NA	-195	NM_025962	67096	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0.080000	0.567164	
mm_100790.1	chr11	4939527	4939727	-	1	NA	NA	NA	-7894	NM_001243043	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.010000	0.507463	
mm_155858.1	chrX	101320822	101321022	+	1	NA	NA	NA	21743	NM_172932	245537	Mm.121508	NM_172932	ENSMUSG00000031302	Nlgn3	A230085M13Rik|HNL3|NL3	neuroligin 3	protein-coding	0.000000	0.577114	
mm_110093.1	chr12	25101111	25101311	-	1	NA	NA	NA	-5119	NM_010496	15902	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.055000	0.621891	
mm_23287.1	chr3	51879270	51879470	+	1	NA	NA	NA	218191	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.040000	0.532338	
mm_47115.1	chr5	119616590	119616790	-	1	NA	NA	NA	-9252	NR_046178	330183	Mm.413133	NR_046178	ENSMUSG00000085708	Gm16063	G630008E18|OTTMUSG00000029664	predicted gene 16063	ncRNA	0.005000	0.348259	
mm_31897.1	chr4	83417637	83417837	+	1	NA	NA	NA	-7	NM_029949	77634	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	0.100000	0.666667	
mm_127024.1	chr15	96286835	96287035	+	1	NA	NA	NA	-587	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.180000	0.845771	
mm_65082.1	chr7	19227710	19227910	-	1	NA	NA	NA	-579	NM_207525	403187	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.050000	0.507463	-33(GTTTTTAAAAGC,+,0.00),-33(GTTTTTAAAAGC,-,0.00),-32(TTTTTAAAAGCC,+,0.00)
mm_158951.1	chr1	87089828	87090028	-	1	NA	NA	NA	0	NM_007433	11650	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0.015000	0.502488	-33(GCCTATTTAAGA,-,0.00),69(GCCTATTTAAGA,-,0.00)
mm_154064.1	chr19	55311803	55312003	-	1	NA	NA	NA	4129	NM_025883	66980	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369	zinc finger, DHHC domain containing 6	protein-coding	0.005000	0.363184	
mm_16976.1	chr2	17996835	17997035	-	1	NA	NA	NA	23	NM_026627	68231	Mm.23887	NM_026627	ENSMUSG00000062651	H2afb1	1700113O17Rik|H2A.Bbd|H2al2|TSEG-1|Tseg1	H2A histone family, member B1	protein-coding	0.010000	0.462687	
mm_89200.1	chr10	86348261	86348461	+	1	NA	NA	NA	47949	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.005000	0.298507	
mm_169639.1	chr15	49248711	49248911	+	1	NA	NA	NA	-456822	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0.035000	0.507463	
mm_164552.1	chr17	13654746	13654946	+	1	NA	NA	NA	-100752	NR_045437	72578	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0.000000	0.422886	
mm_130886.1	chr15	102257373	102257573	-	1	NA	NA	NA	49	NM_011244	19411	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.065000	0.641791	
mm_18796.1	chr2	73892083	73892283	-	1	NA	NA	NA	456	NM_001284371	11909	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0.110000	0.671642	
mm_74115.1	chr8	123062863	123063063	+	1	NA	NA	NA	-2545	NM_153176	234847	Mm.292075	NM_153176	ENSMUSG00000000738	Spg7	AI452278|AU015315|Cmar|PGN	spastic paraplegia 7 homolog (human)	protein-coding	0.025000	0.517413	
mm_67919.1	chr7	99858816	99859016	-	1	NA	NA	NA	-33	NM_025668	66624	Mm.30043	NM_025668	ENSMUSG00000035227	Spcs2	5730406I15Rik|AA408713|mKIAA0102	signal peptidase complex subunit 2 homolog (S. cerevisiae)	protein-coding	0.080000	0.641791	
mm_128961.1	chr15	74817193	74817393	-	1	NA	NA	NA	1522	NM_001177524	625599	Mm.390785	NM_001177524	ENSMUSG00000068349	Gml	EG625599|HemT	glycosylphosphatidylinositol anchored molecule like	protein-coding	0.010000	0.517413	
mm_56735.1	chr6	115758887	115759087	-	1	NA	NA	NA	12	NM_144805	94346	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0.030000	0.646766	
mm_70870.1	chr8	25017236	25017436	+	1	NA	NA	NA	125	NM_027194	69742	Mm.28626	NM_027194	ENSMUSG00000031556	Tm2d2	2410018G23Rik|Blp1	TM2 domain containing 2	protein-coding	0.080000	0.666667	
mm_74527.1	chr8	9559143	9559343	-	1	NA	NA	NA	211780	NM_173446	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding	0.000000	0.487562	
mm_136121.1	chr16	85900173	85900373	-	1	NA	NA	NA	852	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0.080000	0.686567	
mm_124469.1	chr14	121340107	121340307	-	1	NA	NA	NA	39023	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.010000	0.606965	
mm_82607.1	chr9	21510092	21510292	-	1	NA	NA	NA	42	NR_136912	17083	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.075000	0.631841	-26(ATCCTTAAAGGG,-,0.00),-24(CCTTAAAGGGTC,+,0.00)
mm_126546.1	chr15	82028410	82028610	+	1	NA	NA	NA	12141	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.010000	0.328358	
mm_146677.1	chr18	12819700	12819900	-	1	NA	NA	NA	107	NR_045524	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.025000	0.452736	
mm_149495.1	chr19	11912162	11912362	+	1	NA	NA	NA	-137	NM_172635	225929	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	0.085000	0.611940	
mm_23493.1	chr3	60508368	60508568	+	1	NA	NA	NA	7289	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.015000	0.537313	
mm_42342.1	chr5	114904812	114905012	+	1	NA	NA	NA	7978	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.035000	0.537313	
mm_155627.1	chrX	84076498	84076698	+	1	NA	NA	NA	-588674	NM_021898	100502723	Mm.383210	NM_021898	ENSMUSG00000035522	Tsga8	Halap-X|Halapx	testis specific gene A8	protein-coding	0.010000	0.487562	
mm_5076.1	chr1	3671602	3671802	-	1	NA	NA	NA	-204	NM_001011874	497097	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.130000	0.761194	
mm_4001.1	chr1	164796523	164796723	+	1	NA	NA	NA	-109	NM_019759	56429	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	0.015000	0.477612	
mm_148678.1	chr19	5638213	5638413	+	1	NA	NA	NA	823	NM_009045	19697	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.015000	0.537313	
mm_44265.1	chr5	5663114	5663314	-	1	NA	NA	NA	1018	NM_172447	207686	Mm.319007	NM_172447	ENSMUSG00000040473	Cfap69	4921525K03|A330021E22Rik|AI427898	cilia and flagella associated protein 69	protein-coding	0.005000	0.507463	
mm_71940.1	chr8	70352676	70352876	+	1	NA	NA	NA	503	NM_030680	19704	Mm.258280	NM_030680	ENSMUSG00000058301	Upf1	B430202H16Rik|NORF1|PNORF-1|Rent1|Upflp	UPF1 regulator of nonsense transcripts homolog (yeast)	protein-coding	0.145000	0.771144	
mm_163797.1	chr14	17659479	17659679	+	1	NA	NA	NA	-1381	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.020000	0.383085	-5(CCTTTTATACCG,+,0.00)
mm_141567.1	chr17	32284002	32284202	-	1	NA	NA	NA	21	NM_198094	57261	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0.110000	0.726368	
mm_77541.1	chr8	123102170	123102370	-	1	NA	NA	NA	-80	NM_016738	270106	Mm.319719	NM_016738	ENSMUSG00000000740	Rpl13	A52|L13	ribosomal protein L13	protein-coding	0.085000	0.547264	-28(GCCTTTCTAGCC,+,0.00)
mm_104594.1	chr11	97048305	97048505	-	1	NA	NA	NA	-2223	NM_001310509	71240	Mm.190450	NM_001081434	ENSMUSG00000038534	Osbpl7	4933437E18Rik	oxysterol binding protein-like 7	protein-coding	0.015000	0.512438	
mm_160336.1	chr8	13288258	13288458	-	1	NA	NA	NA	-232	NM_001042650	102323	Mm.368890	NM_001024504	ENSMUSG00000038506	Dcun1d2	AW495713|mFLJ10704	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	protein-coding	0.070000	0.621891	
mm_129397.1	chr15	78247642	78247842	-	1	NA	NA	NA	2931	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.005000	0.557214	
mm_46666.1	chr5	108693984	108694184	-	1	NA	NA	NA	-145	NM_001164259	116701	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0.120000	0.741294	
mm_17424.1	chr2	27447823	27448023	-	1	NA	NA	NA	2707	NR_106102	102466836		NR_106102	ENSMUSG00000098812	Mir7578	Gm27789|mmu-mir-7578	microRNA 7578	ncRNA	0.015000	0.532338	
mm_120237.1	chr14	62906776	62906976	+	1	NA	NA	NA	41334	NR_105860	102465311		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.010000	0.462687	
mm_91344.1	chr10	26375882	26376082	-	1	NA	NA	NA	-763	NM_172787	237339	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	l(3)mbt-like 3 (Drosophila)	protein-coding	0.085000	0.606965	
mm_154048.1	chr19	55096648	55096848	-	1	NA	NA	NA	2699	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.015000	0.507463	
mm_155370.1	chrX	71364811	71365011	+	1	NA	NA	NA	151	NM_001313706	53332	Mm.219672	NM_016985	ENSMUSG00000015214	Mtmr1	AW049210	myotubularin related protein 1	protein-coding	0.125000	0.771144	
mm_84394.1	chr9	65536055	65536255	-	1	NA	NA	NA	43932	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.010000	0.567164	
mm_41754.1	chr5	102845234	102845434	+	1	NA	NA	NA	327	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.050000	0.611940	
mm_82217.1	chr9	3015636	3015836	-	1	NA	NA	NA	23007	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.010000	0.343284	
mm_73998.1	chr8	120739745	120739945	+	1	NA	NA	NA	1206	NM_001301811	15900	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.055000	0.537313	
mm_78375.1	chr9	27397129	27397329	+	1	NA	NA	NA	17	NM_001305058	75469	Mm.45824	NM_029299	ENSMUSG00000031991	Spata19	1700001L23Rik|AV047838|spergen-1	spermatogenesis associated 19	protein-coding	0.015000	0.402985	
mm_96118.1	chr11	60707179	60707379	+	1	NA	NA	NA	7589	NM_008502	16897	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	lethal giant larvae homolog 1 (Drosophila)	protein-coding	0.020000	0.616915	
mm_164291.1	chr15	103895802	103896002	-	1	NA	NA	NA	3398	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.000000	0.308458	
mm_56321.1	chr6	92427163	92427363	-	1	NA	NA	NA	54129	NM_001134460	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.000000	0.363184	
mm_20975.1	chr2	151973346	151973546	-	1	NA	NA	NA	-52	NM_001289151	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.050000	0.597015	
mm_78139.1	chr9	20894251	20894451	+	1	NA	NA	NA	4239	NM_016876	53356	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0.015000	0.527363	
mm_62191.1	chr7	97590116	97590316	+	1	NA	NA	NA	10320	NM_001081267	233532	Mm.43977	NM_001081267	ENSMUSG00000035623	Rsf1	4832420A03Rik|C030033M12Rik|Gm164|Hbxap|XAP8|p325	remodeling and spacing factor 1	protein-coding	0.005000	0.298507	
mm_44387.1	chr5	17828859	17829059	-	1	NA	NA	NA	6937	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.025000	0.442786	
mm_74912.1	chr8	25256350	25256550	-	1	NA	NA	NA	49820	NR_040352	74489	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0.045000	0.582090	
mm_28313.1	chr3	89245764	89245964	-	1	NA	NA	NA	33	NM_183037	360213	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.065000	0.661692	
mm_116693.1	chr13	49320154	49320354	-	1	NA	NA	NA	-11046	NM_015759	30938	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.025000	0.656716	
mm_16590.1	chr2	4559583	4559783	-	1	NA	NA	NA	-71	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.050000	0.527363	
mm_30589.1	chr4	5786574	5786774	+	1	NA	NA	NA	142495	NM_173426	242297	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0.000000	0.487562	
mm_70565.1	chr8	13105683	13105883	+	1	NA	NA	NA	62	NM_146207	99375	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	0.135000	0.791045	
mm_7421.1	chr1	119637344	119637544	-	1	NA	NA	NA	11556	NM_001113416	226352	Mm.253156	NM_145506	ENSMUSG00000026383	Epb41l5	1700030C16Rik|AL022914|BE37|E230025E14Rik|Epb4.1l5|Lulu1|NBL5	erythrocyte membrane protein band 4.1 like 5	protein-coding	0.010000	0.402985	
mm_28059.1	chr3	84259463	84259663	-	1	NA	NA	NA	216	NM_001271727	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.090000	0.631841	
mm_108572.1	chr12	84922230	84922430	+	1	NA	NA	NA	-45835	NM_013589	16997	Mm.3900	NM_013589	ENSMUSG00000002020	Ltbp2	AW208642	latent transforming growth factor beta binding protein 2	protein-coding	0.015000	0.442786	
mm_48803.1	chr5	148959372	148959572	-	1	NA	NA	NA	9222	NR_040686	71473	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	0.050000	0.641791	
mm_77980.1	chr9	7871842	7872042	+	1	NA	NA	NA	1228	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.015000	0.507463	
mm_160678.1	chr10	13552869	13553069	+	1	NA	NA	NA	62	NM_025748	66757	Mm.331841	NM_025748	ENSMUSG00000019808	Adat2	4933426M09Rik|Deadc1	adenosine deaminase, tRNA-specific 2	protein-coding	0.050000	0.601990	
mm_140429.1	chr17	88064724	88064924	+	1	NA	NA	NA	461	NM_001081034	225055	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.120000	0.766169	
mm_81050.1	chr9	105642897	105643097	+	1	NA	NA	NA	2	NM_001081309	75669	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 4, p150	protein-coding	0.055000	0.597015	
mm_141589.1	chr17	32418756	32418956	-	1	NA	NA	NA	2119	NM_021319	57757	Mm.86752	NM_021319	ENSMUSG00000079563	Pglyrp2	C730002N09Rik|PGRP-L|Pglyrpl|tagL	peptidoglycan recognition protein 2	protein-coding	0.010000	0.542289	
mm_38390.1	chr4	138819124	138819324	-	1	NA	NA	NA	33	NM_011110	18784	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	0.015000	0.621891	
mm_160133.1	chr7	30612396	30612596	-	1	NA	NA	NA	238	NM_026815	109637	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	0.010000	0.601990	
mm_35811.1	chr4	46677536	46677736	-	1	NA	NA	NA	-27437	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	0.025000	0.537313	
mm_126720.1	chr15	85354219	85354419	+	1	NA	NA	NA	17938	NM_016843	54138	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.025000	0.507463	
mm_66537.1	chr7	45154409	45154609	-	1	NA	NA	NA	29	NM_145954	69748	Mm.82139	NM_145954	ENSMUSG00000007833	Aldh16a1	2410004H02Rik|AI452234|mFLJ00209	aldehyde dehydrogenase 16 family, member A1	protein-coding	0.105000	0.651741	
mm_126086.1	chr15	77855468	77855668	+	1	NA	NA	NA	-13393	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.025000	0.562189	
mm_142009.1	chr17	35200249	35200449	-	1	NA	NA	NA	1658	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.025000	0.577114	
mm_85243.1	chr9	99017753	99017953	-	1	NA	NA	NA	17837	NM_001080776	382097	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	0.020000	0.447761	-29(GAGTCTAAAAGG,-,0.00)
mm_55669.1	chr6	72521625	72521825	-	1	NA	NA	NA	-22666	NM_007599	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.010000	0.532338	
mm_159259.1	chr2	154551643	154551843	+	1	NA	NA	NA	-33	NM_001171640	70362	Mm.479620	NM_001171640	ENSMUSG00000078129	Actl10	1700007I08Rik	actin-like 10	protein-coding	0.010000	0.547264	
mm_106695.1	chr12	3457474	3457674	+	1	NA	NA	NA	30717	NM_172421	75302	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2 (Drosophila)	protein-coding	0.010000	0.527363	
mm_139325.1	chr17	48454799	48454999	+	1	NA	NA	NA	-2	NM_152823	76589	Mm.311629	NM_152823	ENSMUSG00000043592	Unc5cl	2510009H09Rik|BB155270|Zud	unc-5 family C-terminal like	protein-coding	0.030000	0.567164	
mm_3471.1	chr1	150104470	150104670	+	1	NA	NA	NA	4539	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.412935	
mm_103559.1	chr11	77722568	77722768	-	1	NA	NA	NA	2625	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.025000	0.467662	
mm_74777.1	chr8	21932612	21932812	-	1	NA	NA	NA	-2	NM_139222	246082	Mm.390015	NM_139222	ENSMUSG00000048500	Defb15	BD-15	defensin beta 15	protein-coding	0.015000	0.477612	
mm_23249.1	chr3	51224697	51224897	+	1	NA	NA	NA	350	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.120000	0.706468	
mm_139478.1	chr17	56009121	56009321	+	1	NA	NA	NA	20	NM_026530	68047	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	0.090000	0.671642	
mm_73074.1	chr8	94449683	94449883	+	1	NA	NA	NA	-14680	NR_015514	320377	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0.005000	0.393035	
mm_100723.1	chr11	3913744	3913944	-	1	NA	NA	NA	820	NM_153142	103710	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0.115000	0.741294	
mm_75927.1	chr8	71507597	71507797	-	1	NA	NA	NA	4072	NM_032398	84094	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	0.130000	0.691542	
mm_24480.1	chr3	91278337	91278537	+	1	NA	NA	NA	-187632	NM_001101461	229550	Mm.98335	NM_001101461	ENSMUSG00000091175	9130204L05Rik	Gm127	RIKEN cDNA 9130204L05 gene	protein-coding	0.025000	0.477612	
mm_41112.1	chr5	87778075	87778275	+	1	NA	NA	NA	3725	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.010000	0.293532	
mm_82386.1	chr9	14662897	14663097	-	1	NA	NA	NA	-47997	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.025000	0.497512	-5(CTCTTTTTAAAC,-,0.00),-3(CTTTTTAAACTC,+,0.00),30(ACCTTTTAAAAC,-,0.00),31(CCTTTTAAAACT,+,0.00)
mm_31347.1	chr4	46601258	46601458	+	1	NA	NA	NA	571	NM_001164804	107684	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.065000	0.691542	
mm_54156.1	chr6	23079486	23079686	-	1	NA	NA	NA	53400	NM_013930	30956	Mm.18651	NM_013930	ENSMUSG00000029695	Aass	LKR|LKR/SDH|LOR|LOR/SDH|Lorsdh|SDH	aminoadipate-semialdehyde synthase	protein-coding	0.025000	0.462687	
mm_31663.1	chr4	59964081	59964281	+	1	NA	NA	NA	-3516	NM_008648	17843	Mm.457982	NM_008648	ENSMUSG00000041333	Mup4	Mup-4|Mup1	major urinary protein 4	protein-coding	0.005000	0.447761	
mm_67402.1	chr7	79935148	79935348	-	1	NA	NA	NA	16	NM_027420	70420	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	0.085000	0.696517	
mm_80343.1	chr9	75134073	75134273	+	1	NA	NA	NA	62967	NM_010864	17918	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	0.015000	0.393035	7(GGGTATTAAAAC,-,0.00)
mm_100122.1	chr11	115899892	115900092	+	1	NA	NA	NA	-147	NM_183259	66528	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	0.015000	0.592040	
mm_47678.1	chr5	128819810	128820010	-	1	NA	NA	NA	83664	NM_021311	57749	Mm.272720	NM_021311	ENSMUSG00000029423	Piwil1	MIWI	piwi-like RNA-mediated gene silencing 1	protein-coding	0.030000	0.636816	
mm_165290.1	chr2	87218139	87218339	+	1	NA	NA	NA	5345	NM_207565	404327	Mm.377941	NM_207565	ENSMUSG00000070857	Olfr1113	MOR264-25	olfactory receptor 1113	protein-coding	0.000000	0.308458	-83(TTTTTTATACAC,+,0.00)
mm_8026.1	chr1	135129109	135129309	-	1	NA	NA	NA	3366	NM_007955	13924	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP|mOST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	0.025000	0.611940	
mm_45464.1	chr5	67847291	67847491	-	1	NA	NA	NA	40	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.130000	0.796020	
mm_8909.1	chr1	163312851	163313051	-	1	NA	NA	NA	699	NM_011127	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.040000	0.417910	-39(CGCTTTTTAAGA,-,0.00)
mm_135157.1	chr16	35858338	35858538	-	1	NA	NA	NA	12944	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.020000	0.472637	
mm_150137.1	chr19	30587301	30587501	+	1	NA	NA	NA	-37905	NM_010051	13380	Mm.214717	NM_010051	ENSMUSG00000024868	Dkk1	mdkk-1	dickkopf WNT signaling pathway inhibitor 1	protein-coding	0.000000	0.313433	
mm_45999.1	chr5	90640402	90640602	-	1	NA	NA	NA	25	NM_028478	73246	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.055000	0.616915	
mm_88410.1	chr10	77032168	77032368	+	1	NA	NA	NA	-471	NM_001199271	20509	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.015000	0.587065	
mm_137914.1	chr17	32201153	32201353	+	1	NA	NA	NA	-11704	NM_001347341	71932	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9	epoxide hydrolase 3	protein-coding	0.025000	0.641791	
mm_21400.1	chr2	157597217	157597417	-	1	NA	NA	NA	-30956	NM_016916	53619	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0.015000	0.472637	
mm_28061.1	chr3	84259525	84259725	-	1	NA	NA	NA	154	NM_001271727	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.065000	0.562189	
mm_95613.1	chr11	53501059	53501259	+	1	NA	NA	NA	-18577	NM_033144	20362	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0.030000	0.452736	
mm_11841.1	chr2	45112197	45112397	+	1	NA	NA	NA	37	NR_110571	433424	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|OTTMUSG00000012358|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0.020000	0.383085	
mm_146860.1	chr18	24477100	24477300	-	1	NA	NA	NA	6329	NM_026529	68046	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	0.015000	0.467662	
mm_137083.1	chr17	21473755	21473955	+	1	NA	NA	NA	-15133	NM_013843	24132	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	0.005000	0.457711	-27(CCTTTAAGAACC,+,0.00)
mm_111200.1	chr12	84218977	84219177	-	1	NA	NA	NA	-196	NM_001163501	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.065000	0.631841	-38(CCTTTTAGACTC,+,0.00)
mm_155101.1	chrX	48341281	48341481	+	1	NA	NA	NA	23	NM_178782	320376	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	0.065000	0.716418	
mm_119464.1	chr14	47276823	47277023	+	1	NA	NA	NA	-66	NM_172598	218973	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	0.140000	0.751244	
mm_107133.1	chr12	21286194	21286394	+	1	NA	NA	NA	-3	NM_018813	54451	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	0.085000	0.606965	
mm_132652.1	chr16	41533046	41533246	+	1	NA	NA	NA	-196	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.020000	0.472637	
mm_168018.1	chrY	90737659	90737859	+	1	NA	NA	NA	17291	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.432836	
mm_45286.1	chr5	64960744	64960944	-	1	NA	NA	NA	-810	NM_011604	21899	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0.035000	0.432836	
mm_61509.1	chr7	78783222	78783422	+	1	NA	NA	NA	191	NM_026498	67994	Mm.297033	NM_026498	ENSMUSG00000030611	Mrps11	0710005I03Rik|C79873	mitochondrial ribosomal protein S11	protein-coding	0.035000	0.502488	-69(GACTATTTAAGA,-,0.00)
mm_157311.1	chrX	20950505	20950705	-	1	NA	NA	NA	3	NM_007922	13712	Mm.405823	NM_007922	ENSMUSG00000009406	Elk1	Elk-1	ELK1, member of ETS oncogene family	protein-coding	0.055000	0.641791	
mm_135318.1	chr16	38713377	38713577	-	1	NA	NA	NA	-442	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.030000	0.522388	
mm_168238.1	chr10	81812074	81812274	+	1	NA	NA	NA	-12	NM_001142963	100233208	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	ENSMUSG00000074860	predicted gene 10778	protein-coding	0.055000	0.587065	
mm_110547.1	chr12	55466269	55466469	-	1	NA	NA	NA	26278	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.025000	0.532338	-35(CGCTTTTTAAAG,-,0.00),-34(GCTTTTTAAAGG,-,0.00),-33(CTTTTTAAAGGA,+,0.00)
mm_13759.1	chr2	118328939	118329139	+	1	NA	NA	NA	24125	NR_045919	73358	Mm.437192	NR_045919	ENSMUSG00000085889	1700054M17Rik	-	RIKEN cDNA 1700054M17 gene	ncRNA	0.010000	0.427861	-19(ATGTATAAAAGA,-,0.00)
mm_6407.1	chr1	72873937	72874137	-	1	NA	NA	NA	828	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.060000	0.641791	
mm_119723.1	chr14	53960841	53961041	+	1	NA	NA	NA	292988	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.467662	
mm_164808.1	chr18	30524570	30524770	-	1	NA	NA	NA	251774	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding	0.000000	0.393035	
mm_14835.1	chr2	147364942	147365142	+	1	NA	NA	NA	48	NM_008780	18503	Mm.315502	NM_008780	ENSMUSG00000037034	Pax1	Pax-1|hbs|hunchback|un|undulated|wt	paired box 1	protein-coding	0.095000	0.641791	
mm_50402.1	chr6	48725687	48725887	+	1	NA	NA	NA	7166	NM_146167	231932	Mm.30479	NM_146167	ENSMUSG00000043931	Gimap7	IAN7|Ian3	GTPase, IMAP family member 7	protein-coding	0.005000	0.482587	-32(CTCTATAAAAAG,-,0.00)
mm_159805.1	chr5	114567903	114568103	+	1	NA	NA	NA	-248	NM_001004180	433940	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0.095000	0.726368	
mm_108200.1	chr12	76896714	76896914	+	1	NA	NA	NA	59347	NM_145927	110606	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	0.010000	0.383085	
mm_31232.1	chr4	44451619	44451819	+	1	NA	NA	NA	150802	NM_010790	17279	Mm.268668	NM_010790	ENSMUSG00000035683	Melk	AI327312|MPK38|mKIAA0175	maternal embryonic leucine zipper kinase	protein-coding	0.015000	0.497512	
mm_36574.1	chr4	87986164	87986364	-	1	NA	NA	NA	47143	NM_027326	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.005000	0.273632	
mm_16909.1	chr2	13491901	13492101	-	1	NA	NA	NA	-125	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.010000	0.373134	
mm_31665.1	chr4	59964130	59964330	+	1	NA	NA	NA	-3565	NM_008648	17843	Mm.457982	NM_008648	ENSMUSG00000041333	Mup4	Mup-4|Mup1	major urinary protein 4	protein-coding	0.010000	0.437811	
mm_97417.1	chr11	77982788	77982988	+	1	NA	NA	NA	72	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0.105000	0.716418	
mm_42470.1	chr5	115454174	115454374	+	1	NA	NA	NA	-11992	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.010000	0.477612	
mm_107240.1	chr12	26478940	26479140	+	1	NA	NA	NA	9825	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.020000	0.432836	
mm_152980.1	chr19	29488486	29488686	-	1	NA	NA	NA	33401	NR_015567	77779	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.025000	0.507463	
mm_83665.1	chr9	49673843	49674043	-	1	NA	NA	NA	125126	NM_001081445	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding	0.000000	0.417910	
mm_60963.1	chr7	47700034	47700234	+	1	NA	NA	NA	-98762	NM_153067	233222	Mm.240142	NM_153067	ENSMUSG00000078698	Mrgpra3	Mrga3	MAS-related GPR, member A3	protein-coding	0.005000	0.417910	-34(TTGCATATAAGC,-,0.00)
mm_40733.1	chr5	66195504	66195704	+	1	NA	NA	NA	-4269	NR_040695	73639	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA	0.030000	0.587065	
mm_155873.1	chrX	101429581	101429781	+	1	NA	NA	NA	30	NM_001252518	53610	Mm.280069	NM_023144	ENSMUSG00000031311	Nono	AA407051|AV149256|NRB54|P54NRB|nonA	non-POU-domain-containing, octamer binding protein	protein-coding	0.090000	0.611940	
mm_108691.1	chr12	86895205	86895405	+	1	NA	NA	NA	-10491	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.015000	0.542289	
mm_172176.1	chr6	47875930	47876130	-	1	NA	NA	NA	-1525	NM_146175	101095	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	0.015000	0.442786	
mm_114480.1	chr13	69141147	69141347	+	1	NA	NA	NA	-141706	NM_153534	210044	Mm.390617	NM_153534	ENSMUSG00000021536	Adcy2	mKIAA1060	adenylate cyclase 2	protein-coding	0.010000	0.412935	
mm_29054.1	chr3	103741842	103742042	-	1	NA	NA	NA	-3941	NM_133859	99543	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	0.010000	0.363184	-7(TTTTTTAAAGCA,+,0.00)
mm_35540.1	chr4	41316650	41316850	-	1	NA	NA	NA	-1849	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.015000	0.532338	
mm_64705.1	chr7	4570589	4570789	-	1	NA	NA	NA	-24122	NM_016908	53420	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	0.000000	0.398010	
mm_101839.1	chr11	48753423	48753623	-	1	NA	NA	NA	-46837	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.010000	0.398010	
mm_132787.1	chr16	44965153	44965353	+	1	NA	NA	NA	21575	NM_001128132	74603	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0.010000	0.462687	
mm_12001.1	chr2	57238343	57238543	+	1	NA	NA	NA	61	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.120000	0.731343	
mm_13032.1	chr2	91054089	91054289	+	1	NA	NA	NA	173	NM_008948	19182	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	0.095000	0.621891	
mm_139533.1	chr17	56696638	56696838	+	1	NA	NA	NA	20183	NM_178926	106639	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0.010000	0.517413	
mm_84143.1	chr9	59391453	59391653	-	1	NA	NA	NA	-38045	NM_175325	102774	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	0.005000	0.437811	60(CCTTTTAGAAAG,+,0.00)
mm_128231.1	chr15	36600830	36601030	-	1	NA	NA	NA	8043	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.025000	0.412935	-88(GTTTCTATAAGG,-,0.00)
mm_19612.1	chr2	102746660	102746860	-	1	NA	NA	NA	40322	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.005000	0.507463	
mm_127579.1	chr15	102300286	102300486	+	1	NA	NA	NA	4093	NM_001014976	105988	Mm.288324	NM_001014976	ENSMUSG00000058290	Espl1	AL024103|AU045071|Cerp|ESP1|PRCE|SSE	extra spindle pole bodies 1, separase	protein-coding	0.020000	0.368159	
mm_27796.1	chr3	75650360	75650560	-	1	NA	NA	NA	5271	NR_040539	69193	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	0.005000	0.457711	-36(TCCTTTATAAAG,-,0.00),-34(CTTTATAAAGTG,+,0.00),54(TCCTTTATAAAG,-,0.00),56(CTTTATAAAGTG,+,0.00)
mm_146976.1	chr18	33809097	33809297	-	1	NA	NA	NA	14305	NR_038151	69749	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.020000	0.398010	
mm_112017.1	chr12	111377491	111377691	-	1	NA	NA	NA	127	NM_183016	217866	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0.180000	0.825871	
mm_129120.1	chr15	76091613	76091813	-	1	NA	NA	NA	-1700	NM_144847	223649	Mm.101946	NM_144847	ENSMUSG00000075590	Nrbp2	BC011468	nuclear receptor binding protein 2	protein-coding	0.100000	0.716418	
mm_88854.1	chr10	80930626	80930826	+	1	NA	NA	NA	635	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.035000	0.522388	
mm_122027.1	chr14	29432175	29432375	-	1	NA	NA	NA	289589	NM_009785	12294	Mm.386754	NM_009785	ENSMUSG00000021991	Cacna2d3	Cacnad3|alapha2delta3	calcium channel, voltage-dependent, alpha2/delta subunit 3	protein-coding	0.005000	0.323383	
mm_165344.1	chr2	118012367	118012567	+	1	NA	NA	NA	98735	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA	0.015000	0.502488	
mm_158421.1	chrX	139085139	139085339	-	1	NA	NA	NA	-3	NM_177920	331535	Mm.211704	NM_177920	ENSMUSG00000031271	Serpina7	C730040N12Rik|Tbg	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7	protein-coding	0.000000	0.407960	
mm_62583.1	chr7	105480876	105481076	+	1	NA	NA	NA	1221	NM_028444	109042	Mm.3124	NM_028444	ENSMUSG00000037060	Prkcdbp	3110015B12Rik|6330514M23Rik|SRBC	protein kinase C, delta binding protein	protein-coding	0.050000	0.601990	
mm_46771.1	chr5	112276276	112276476	-	1	NA	NA	NA	-315	NM_001326590	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.075000	0.661692	
mm_162665.1	chr10	6979505	6979705	+	1	NA	NA	NA	676	NM_001347225	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.015000	0.462687	
mm_159613.1	chr4	132251740	132251940	-	1	NA	NA	NA	9709	NM_020273	56809	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	0.020000	0.517413	-64(CCTTATCTGGCG,+,0.00)
mm_73820.1	chr8	117410958	117411158	+	1	NA	NA	NA	-41965	NR_106045	102466801		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.035000	0.512438	
mm_50546.1	chr6	49046356	49046556	+	1	NA	NA	NA	9938	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.000000	0.422886	
mm_111877.1	chr12	108003596	108003796	-	1	NA	NA	NA	-282	NM_021399	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.035000	0.477612	
mm_11620.1	chr2	34772499	34772699	+	1	NA	NA	NA	509	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.085000	0.592040	
mm_38192.1	chr4	135353071	135353271	-	1	NA	NA	NA	43	NM_016799	51796	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.165000	0.761194	
mm_150135.1	chr19	30185779	30185979	+	1	NA	NA	NA	-10438	NM_138595	104174	Mm.274852	NM_138595	ENSMUSG00000024827	Gldc	D030049L12Rik|D19Wsu57e	glycine decarboxylase	protein-coding	0.020000	0.477612	
mm_115969.1	chr13	23991070	23991270	-	1	NA	NA	NA	44	NM_145399	214189	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.070000	0.656716	
mm_63663.1	chr7	129591820	129592020	+	1	NA	NA	NA	57	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.095000	0.621891	
mm_144042.1	chr17	90346499	90346699	-	1	NA	NA	NA	109281	NM_001346958	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.005000	0.283582	
mm_124177.1	chr14	93867113	93867313	-	1	NA	NA	NA	21675	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.318408	
mm_126775.1	chr15	86169843	86170043	+	1	NA	NA	NA	16198	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.015000	0.492537	-83(CCTTTAATAAAA,+,0.00)
mm_31496.1	chr4	53246078	53246278	+	1	NA	NA	NA	-18	NR_040665	78180	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.030000	0.507463	
mm_80258.1	chr9	72807208	72807408	+	1	NA	NA	NA	34	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.135000	0.761194	
mm_76355.1	chr8	84771911	84772111	-	1	NA	NA	NA	2358	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.060000	0.582090	74(TTGTTTAAAGGG,-,0.00)
mm_5655.1	chr1	41533211	41533411	-	1	NA	NA	NA	-352059	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA	0.005000	0.412935	
mm_114060.1	chr13	54371408	54371608	+	1	NA	NA	NA	159	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.090000	0.721393	
mm_139012.1	chr17	45595560	45595760	+	1	NA	NA	NA	-88	NM_001199116	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.090000	0.721393	
mm_5768.1	chr1	50980998	50981198	-	1	NA	NA	NA	53575	NM_019790	56363	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	0.005000	0.373134	
mm_49477.1	chr6	29527988	29528188	+	1	NA	NA	NA	-1194	NM_001252382	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.030000	0.606965	
mm_141313.1	chr17	28358616	28358816	-	1	NA	NA	NA	6427	NM_021478	22157	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.035000	0.606965	
mm_109365.1	chr12	109636413	109636613	+	1	NA	NA	NA	501	NR_046302	449562		NR_046302	ENSMUSG00000088294	AF357425	MBII-48	snoRNA AF357425	snoRNA	0.005000	0.437811	
mm_152681.1	chr19	15984854	15985054	-	1	NA	NA	NA	35	NM_198019	208518	Mm.105652	NM_198019	ENSMUSG00000041491	Cep78	5730599I05Rik|D030027P05	centrosomal protein 78	protein-coding	0.180000	0.771144	
mm_82167.1	chr9	123834278	123834478	+	1	NA	NA	NA	17283	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.010000	0.502488	
mm_115989.1	chr13	24330112	24330312	-	1	NA	NA	NA	2808	NM_001111110	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.005000	0.447761	12(CCCCTTATACCC,+,0.00)
mm_103157.1	chr11	70409926	70410126	-	1	NA	NA	NA	5	NM_029231	75273	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	0.085000	0.686567	
mm_167047.1	chr7	81859295	81859495	+	1	NA	NA	NA	394	NM_145375	107769	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.135000	0.746269	
mm_58695.1	chr7	12925397	12925597	+	1	NA	NA	NA	-1919	NM_029809	381845	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0.045000	0.527363	
mm_133073.1	chr16	58677739	58677939	+	1	NA	NA	NA	7631	NM_007757	12892	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0.030000	0.462687	
mm_48425.1	chr5	140507499	140507699	-	1	NA	NA	NA	1990	NM_021528	59031	Mm.28934	NM_021528	ENSMUSG00000036599	Chst12	AI595374|C4S-2|C4ST2	carbohydrate sulfotransferase 12	protein-coding	0.005000	0.557214	
mm_104103.1	chr11	86705095	86705295	-	1	NA	NA	NA	21114	NM_001098810	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.015000	0.363184	
mm_159372.1	chr3	88835128	88835328	+	1	NA	NA	NA	-3	NM_027389	76022	Mm.126870	NM_027389	ENSMUSG00000054199	Gon4l	1500041I23Rik|2610100B20Rik|3632445O20Rik|5430404N14Rik|AA387005	gon-4-like (C.elegans)	protein-coding	0.100000	0.641791	
mm_86271.1	chr9	121719991	121720191	-	1	NA	NA	NA	910	NM_010918	18087	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0.035000	0.557214	
mm_30141.1	chr3	142367193	142367393	-	1	NA	NA	NA	24557	NM_022554	56376	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0.000000	0.308458	-1(GCATTTAAAGGG,+,0.00),-1(GCATTTAAAGGG,-,0.00)
mm_43631.1	chr5	138187445	138187645	+	1	NA	NA	NA	10	NM_178612	66455	Mm.24592	NM_178612	ENSMUSG00000036968	Cnpy4	2610019P18Rik	canopy FGF signaling regulator 4	protein-coding	0.040000	0.482587	-45(TTTTTTAAAGCT,+,0.00)
mm_159416.1	chr3	105705232	105705432	+	1	NA	NA	NA	-126	NM_001163356	109050	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0.055000	0.731343	
mm_137595.1	chr17	28142088	28142288	+	1	NA	NA	NA	-338	NM_001004366	268935	Mm.258491	NM_001004366	ENSMUSG00000038677	Scube3	CEGF3|D030038I21Rik	signal peptide, CUB domain, EGF-like 3	protein-coding	0.040000	0.572139	
mm_172867.1	chr9	4182662	4182862	+	1	NA	NA	NA	126732	NR_136941	67618	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0.070000	0.661692	
mm_11490.1	chr2	32452103	32452303	+	1	NA	NA	NA	-733	NM_146118	227731	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.075000	0.656716	
mm_86054.1	chr9	114564103	114564303	-	1	NA	NA	NA	166	NM_001042503	636931	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	0.110000	0.676617	
mm_43414.1	chr5	135962850	135963050	+	1	NA	NA	NA	11526	NM_001160366	109267	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0.070000	0.671642	
mm_16622.1	chr2	5675908	5676108	-	1	NA	NA	NA	38	NM_001290376	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.015000	0.477612	
mm_150454.1	chr19	38162085	38162285	+	1	NA	NA	NA	29404	NM_001170959	110855	Mm.450141	NM_033614	ENSMUSG00000024992	Pde6c	cpfl1	phosphodiesterase 6C, cGMP specific, cone, alpha prime	protein-coding	0.020000	0.447761	
mm_48620.1	chr5	144965675	144965875	-	1	NA	NA	NA	55	NM_001038627	75788	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	0.190000	0.820896	
mm_122785.1	chr14	54413806	54414006	-	1	NA	NA	NA	3773	NM_001253679	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.015000	0.597015	
mm_49423.1	chr6	29246080	29246280	+	1	NA	NA	NA	-26308	NM_001190461	69573	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.020000	0.507463	-34(CTGCTTAAAAGC,-,0.00)
mm_29924.1	chr3	131490658	131490858	-	1	NA	NA	NA	-74010	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.055000	0.606965	
mm_55266.1	chr6	53820471	53820671	-	1	NA	NA	NA	254	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.070000	0.611940	
mm_44379.1	chr5	17820497	17820697	-	1	NA	NA	NA	15299	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.353234	
mm_12573.1	chr2	73085358	73085558	+	1	NA	NA	NA	-105012	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.015000	0.457711	
mm_72720.1	chr8	85036816	85037016	+	1	NA	NA	NA	1	NM_145390	212999	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	0.085000	0.572139	
mm_156539.1	chrX	151169382	151169582	+	1	NA	NA	NA	-28596	NM_001271679	279561	Mm.441474	NM_001271678	ENSMUSG00000041245	Wnk3	Prkwnk3|Wnk3-ps	WNK lysine deficient protein kinase 3	protein-coding	0.085000	0.711443	
mm_3652.1	chr1	153093383	153093583	+	1	NA	NA	NA	92964	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.020000	0.507463	
mm_53988.1	chr6	6871468	6871668	-	1	NA	NA	NA	-2035	NR_015388	320038	Mm.94021	NR_015388		Dlx6os1	A230055N17Rik|Dlx6as1|Evf-1|Evf-2|Evf1|Evf1/2|Evf2|Shhrs|mEvf-1	distal-less homeobox 6, opposite strand 1	ncRNA	0.015000	0.462687	
mm_98527.1	chr11	94990904	94991104	+	1	NA	NA	NA	-208	NM_172261	217124	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.125000	0.741294	
mm_118178.1	chr13	106988311	106988511	-	1	NA	NA	NA	33703	NM_001145779	16563	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	0.015000	0.343284	-98(GCTTTAAGACCA,+,0.00)
mm_162759.1	chr10	61783734	61783934	-	1	NA	NA	NA	30	NM_207000	404634	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	0.105000	0.706468	
mm_142857.1	chr17	51813120	51813320	-	1	NA	NA	NA	-1166	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.150000	0.786070	
mm_48349.1	chr5	139325625	139325825	-	1	NA	NA	NA	-261	NM_172723	231821	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.055000	0.582090	
mm_957.1	chr1	57845444	57845644	+	1	NA	NA	NA	-27	NM_001164566	67198	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.020000	0.507463	
mm_60653.1	chr7	44869109	44869309	+	1	NA	NA	NA	579	NM_133949	84113	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0.125000	0.761194	
mm_68953.1	chr7	126564500	126564700	-	1	NA	NA	NA	1766	NM_146200	56347	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.020000	0.487562	
mm_102525.1	chr11	60931591	60931791	-	1	NA	NA	NA	176	NR_027800	24082	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	0.050000	0.587065	
mm_131437.1	chr16	15984395	15984595	+	1	NA	NA	NA	97209	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.010000	0.422886	-47(CTCTTTATAAAG,-,0.00),-45(CTTTATAAAGGA,+,0.00)
mm_160463.1	chr8	109961949	109962149	-	1	NA	NA	NA	156	NM_212447	73608	Mm.86833	NM_028584	ENSMUSG00000001672	Marveld3	1810006A16Rik|AI642133|Marvd3|Mrvldc3	MARVEL (membrane-associating) domain containing 3	protein-coding	0.130000	0.681592	
mm_7245.1	chr1	93635567	93635767	-	1	NA	NA	NA	60	NM_021537	59041	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.105000	0.691542	
mm_17189.1	chr2	25461010	25461210	-	1	NA	NA	NA	-16	NM_153557	227622	Mm.261780	NM_153557	ENSMUSG00000047617	BC029214	D930050G13Rik|Paxx	cDNA sequence BC029214	protein-coding	0.075000	0.592040	
mm_142020.1	chr17	35201905	35202105	-	1	NA	NA	NA	2	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.025000	0.552239	-34(GGCTATAAAGGC,-,0.00)
mm_128316.1	chr15	37966264	37966464	-	1	NA	NA	NA	-5309	NM_199476	382985	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.000000	0.363184	
mm_90062.1	chr10	116289289	116289489	+	1	NA	NA	NA	-11985	NM_029928	19263	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0.000000	0.353234	
mm_26795.1	chr3	9833504	9833704	-	1	NA	NA	NA	75	NM_053182	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.150000	0.741294	
mm_27241.1	chr3	36567816	36568016	-	1	NA	NA	NA	4080	NM_009828	12428	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	0.005000	0.398010	
mm_87744.1	chr10	60266868	60267068	+	1	NA	NA	NA	-10660	NM_001146123	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.030000	0.562189	
mm_36453.1	chr4	82504797	82504997	-	1	NA	NA	NA	882	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.050000	0.472637	-35(GGCTATTTAAGG,-,0.00)
mm_110894.1	chr12	75596087	75596287	-	1	NA	NA	NA	13	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.090000	0.656716	
mm_112375.1	chr12	119227538	119227738	-	1	NA	NA	NA	10638	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.000000	0.412935	-92(AGTTTTAAAAGG,-,0.00),-91(GTTTTAAAAGGT,+,0.00)
mm_45322.1	chr5	65479776	65479976	-	1	NA	NA	NA	12959	NM_133697	68552	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.010000	0.482587	
mm_80295.1	chr9	73102356	73102556	+	1	NA	NA	NA	58	NM_001311106	66991	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	0.020000	0.522388	
mm_59644.1	chr7	28161065	28161265	+	1	NA	NA	NA	-8583	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.015000	0.393035	
mm_118283.1	chr13	112760411	112760611	-	1	NA	NA	NA	-40266	NM_008903	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.010000	0.462687	-35(CACCATATAAAG,-,0.00),-33(CCATATAAAGGC,+,0.00),-33(CCATATAAAGGC,-,0.00)
mm_38894.1	chr4	149774159	149774359	-	1	NA	NA	NA	8	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.175000	0.786070	
mm_119963.1	chr14	55478705	55478905	+	1	NA	NA	NA	47	NM_030686	28200	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	0.070000	0.681592	
mm_152966.1	chr19	29367242	29367442	-	1	NA	NA	NA	-96	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.050000	0.492537	
mm_27934.1	chr3	79568028	79568228	-	1	NA	NA	NA	-449	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.065000	0.651741	
mm_8946.1	chr1	164438308	164438508	-	1	NA	NA	NA	19947	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.050000	0.542289	
mm_106186.1	chr11	116806879	116807079	-	1	NA	NA	NA	21067	NM_026280	67622	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0.030000	0.373134	
mm_49408.1	chr6	28480300	28480500	+	1	NA	NA	NA	52	NM_019776	56463	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.110000	0.661692	
mm_151771.1	chr19	5293093	5293293	-	1	NA	NA	NA	2262	NM_030109	319322	Mm.196532	NM_030109	ENSMUSG00000024853	Sf3b2	145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150	splicing factor 3b, subunit 2	protein-coding	0.015000	0.606965	
mm_135867.1	chr16	60606377	60606577	-	1	NA	NA	NA	-946	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0.060000	0.636816	
mm_38883.1	chr4	149701518	149701718	-	1	NA	NA	NA	11	NM_001029837	18707	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol 3-kinase catalytic delta polypeptide	protein-coding	0.025000	0.537313	
mm_112396.1	chr12	119238581	119238781	-	1	NA	NA	NA	-405	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.045000	0.631841	
mm_159177.1	chr2	111328473	111328673	+	1	NA	NA	NA	152	NM_001005568	257979	Mm.377322	NM_001005568	ENSMUSG00000095156	Olfr1281	MOR248-14P|MOR248-18	olfactory receptor 1281	protein-coding	0.000000	0.388060	
mm_49692.1	chr6	33632439	33632639	+	1	NA	NA	NA	383389	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.010000	0.527363	
mm_41579.1	chr5	93172983	93173183	+	1	NA	NA	NA	33412	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.030000	0.507463	
mm_11348.1	chr2	30845245	30845445	+	1	NA	NA	NA	-22	NM_009116	20204	Mm.1802	NM_009116	ENSMUSG00000039476	Prrx2	Prx2|S8	paired related homeobox 2	protein-coding	0.120000	0.751244	
mm_142156.1	chr17	36042636	36042836	-	1	NA	NA	NA	6	NM_001347382	15039	Mm.195061	NM_010396	ENSMUSG00000056116	H2-T22	27b|H-2T17|H-2T22|H2-T17|T22b	histocompatibility 2, T region locus 22	protein-coding	0.040000	0.522388	
mm_47614.1	chr5	125140899	125141099	-	1	NA	NA	NA	38215	NM_001253905	20602	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.060000	0.726368	
mm_136100.1	chr16	85103233	85103433	-	1	NA	NA	NA	70374	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.025000	0.532338	
mm_107332.1	chr12	32059881	32060081	+	1	NA	NA	NA	1298	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.010000	0.457711	
mm_78014.1	chr9	13620884	13621084	+	1	NA	NA	NA	995	NM_001013813	270118	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like 2 (Drosophila)	protein-coding	0.010000	0.577114	
mm_84624.1	chr9	70641302	70641502	-	1	NA	NA	NA	15772	NM_172772	235461	Mm.170855	NM_172772	ENSMUSG00000042444	Fam63b	AI465301|B230380D07Rik|mKIAA1164	family with sequence similarity 63, member B	protein-coding	0.000000	0.343284	
mm_69717.1	chr7	140164203	140164403	-	1	NA	NA	NA	-1355	NM_146952	258954	Mm.377769	NM_146952	ENSMUSG00000051180	Olfr522	MOR103-5	olfactory receptor 522	protein-coding	0.015000	0.562189	
mm_72305.1	chr8	77093277	77093477	+	1	NA	NA	NA	190869	NM_001083906	110784	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0.000000	0.358209	
mm_29533.1	chr3	116662462	116662662	-	1	NA	NA	NA	115	NM_008246	15247	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	0.130000	0.731343	
mm_76958.1	chr8	106058602	106058802	-	1	NA	NA	NA	-901	NM_010901	18021	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.025000	0.507463	
mm_40903.1	chr5	75180036	75180236	+	1	NA	NA	NA	3305	NR_105992	102465620		NR_105992	ENSMUSG00000099060	Mir7025	Gm27860|mmu-mir-7025	microRNA 7025	ncRNA	0.040000	0.557214	
mm_73089.1	chr8	94531445	94531645	+	1	NA	NA	NA	-1483	NM_153507	234577	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0.000000	0.393035	
mm_151756.1	chr19	5099589	5099789	-	1	NA	NA	NA	-1168	NM_009920	12794	Mm.299737	NM_009920	ENSMUSG00000024873	Cnih2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding	0.030000	0.666667	
mm_131343.1	chr16	13447854	13448054	+	1	NA	NA	NA	-1569	NR_030549	100124432		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0.070000	0.726368	
mm_132902.1	chr16	48871960	48872160	+	1	NA	NA	NA	-548	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.000000	0.417910	
mm_144974.1	chr18	37954994	37955194	+	1	NA	NA	NA	-106	NM_010411	15183	Mm.20521	NM_010411	ENSMUSG00000024454	Hdac3	AW537363	histone deacetylase 3	protein-coding	0.060000	0.597015	
mm_101188.1	chr11	17211439	17211639	-	1	NA	NA	NA	50	NM_025443	66249	Mm.27831	NM_025443	ENSMUSG00000020116	Pno1	1810003N24Rik|AA407421|AU015468|AU019495|AU042323|Emi3|Imi3	partner of NOB1 homolog	protein-coding	0.090000	0.621891	
mm_140109.1	chr17	78573833	78574033	+	1	NA	NA	NA	65870	NM_028813	74199	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik	vitrin	protein-coding	0.025000	0.482587	
mm_73750.1	chr8	114746669	114746869	+	1	NA	NA	NA	307117	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.000000	0.313433	
mm_72029.1	chr8	70758092	70758292	+	1	NA	NA	NA	2729	NM_183170	234384	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0.030000	0.542289	
mm_114366.1	chr13	62263494	62263694	+	1	NA	NA	NA	119580	NM_001162910	100041979	Mm.445930	NM_001162910	ENSMUSG00000094942	Gm3604	-	predicted gene 3604	protein-coding	0.010000	0.502488	
mm_136209.1	chr16	89837113	89837313	-	1	NA	NA	NA	-18861	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.025000	0.522388	
mm_148415.1	chr19	3935678	3935878	+	1	NA	NA	NA	592	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.080000	0.611940	
mm_32490.1	chr4	107968524	107968724	+	1	NA	NA	NA	290	NM_146255	242607	Mm.192040	NM_146255	ENSMUSG00000008932	Slc1a7	A930031E15Rik|Eaat5	solute carrier family 1 (glutamate transporter), member 7	protein-coding	0.040000	0.631841	
mm_138303.1	chr17	34643843	34644043	+	1	NA	NA	NA	-940	NM_019873	56299	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0.010000	0.472637	
mm_70655.1	chr8	14449933	14450133	+	1	NA	NA	NA	354158	NM_172910	244310	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	discs, large (Drosophila) homolog-associated protein 2	protein-coding	0.010000	0.373134	
mm_83238.1	chr9	42399600	42399800	-	1	NA	NA	NA	229	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.035000	0.442786	
mm_76879.1	chr8	105606588	105606788	-	1	NA	NA	NA	1459	NM_001081241	75687	Mm.41261	NM_001081241	ENSMUSG00000038604	Fam65a	2310066E14Rik|AI837433	family with sequence similarity 65, member A	protein-coding	0.050000	0.671642	
mm_105456.1	chr11	104545825	104546025	-	1	NA	NA	NA	4695	NM_001285990	217232	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	0.000000	0.383085	-7(TTTTTTATAGTA,+,0.00)
mm_164365.1	chr16	23146473	23146673	+	1	NA	NA	NA	37	NM_009605	11450	Mm.3969	NM_009605	ENSMUSG00000022878	Adipoq	30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1	adiponectin, C1Q and collagen domain containing	protein-coding	0.015000	0.527363	
mm_35573.1	chr4	41713409	41713609	-	1	NA	NA	NA	8	NM_027278	69961	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	0.100000	0.676617	
mm_99160.1	chr11	100622802	100623002	+	1	NA	NA	NA	-53	NM_028024	71966	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0.095000	0.706468	
mm_33819.1	chr4	135377025	135377225	+	1	NA	NA	NA	8547	NM_001168498	230822	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	0.045000	0.532338	
mm_155871.1	chrX	101384767	101384967	+	1	NA	NA	NA	1135	NM_001302497	14618	Mm.21198	NM_008124	ENSMUSG00000047797	Gjb1	Cnx32|Cx32|connexin-32	gap junction protein, beta 1	protein-coding	0.075000	0.621891	
mm_156816.1	chrX	164139229	164139429	+	1	NA	NA	NA	-13	NM_001130513	70008	Mm.13451	NM_027286	ENSMUSG00000015405	Ace2	2010305L05Rik	angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	protein-coding	0.005000	0.447761	29(CCATTTAAAGTG,+,0.00)
mm_8876.1	chr1	162859987	162860187	-	1	NA	NA	NA	-87	NM_001330318	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.010000	0.557214	
mm_98473.1	chr11	94950311	94950511	+	1	NA	NA	NA	14187	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.045000	0.597015	
mm_78325.1	chr9	25151914	25152114	+	1	NA	NA	NA	-233	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.055000	0.592040	
mm_165376.1	chr2	128406375	128406575	-	1	NA	NA	NA	22876	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.020000	0.462687	
mm_116062.1	chr13	27562354	27562554	-	1	NA	NA	NA	2152	NM_001316721	67310	Mm.46091	NM_023332	ENSMUSG00000006490	Prl8a9	1600019F10Rik|Ghd15|PLP-C2|PLP-Cbeta|Prlpc2	prolactin family8, subfamily a, member 9	protein-coding	0.015000	0.457711	
mm_13627.1	chr2	113640449	113640649	+	1	NA	NA	NA	-44541	NM_001287818	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.000000	0.328358	52(TTGTATATAAGC,-,0.00)
mm_109263.1	chr12	109544572	109544772	+	1	NA	NA	NA	131	NR_037313	100499530		NR_037313	ENSMUSG00000084559	Mir1906-2	mmu-mir-1906-2	microRNA 1906-2	ncRNA	0.020000	0.547264	
mm_48613.1	chr5	144479611	144479811	-	1	NA	NA	NA	-66176	NM_016789	53324	Mm.10099	NM_016789	ENSMUSG00000059991	Nptx2	Narp|np2	neuronal pentraxin 2	protein-coding	0.005000	0.517413	-66(GACTTTTAAGAG,-,0.00),-64(CTTTTAAGAGAA,+,0.00)
mm_160945.1	chr11	96133556	96133756	+	1	NA	NA	NA	-130	NM_172799	237930	Mm.249912	NM_172799	ENSMUSG00000038756	Ttll6	4932418K24Rik|D11Moh43e|D11Moh44e|t8130b59	tubulin tyrosine ligase-like family, member 6	protein-coding	0.035000	0.547264	
mm_66637.1	chr7	45538390	45538590	-	1	NA	NA	NA	12160	NM_148927	69217	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0.040000	0.557214	
mm_113661.1	chr13	42681504	42681704	+	1	NA	NA	NA	805	NM_001302635	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.030000	0.432836	
mm_21975.1	chr2	167349108	167349308	-	1	NA	NA	NA	-30	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.145000	0.805970	
mm_157725.1	chrX	70346069	70346269	-	1	NA	NA	NA	18916	NM_010498	15931	Mm.233083	NM_010498	ENSMUSG00000035847	Ids	AW214631	iduronate 2-sulfatase	protein-coding	0.005000	0.512438	
mm_160831.1	chr11	46698490	46698690	-	1	NA	NA	NA	240	NM_001161355	171284	Mm.234654	NM_134249	ENSMUSG00000040413	Timd2	AA816106|AU019358|AU019662|C78111|G9D3|TIM-2|Tim2	T cell immunoglobulin and mucin domain containing 2	protein-coding	0.010000	0.452736	
mm_96861.1	chr11	70092627	70092827	+	1	NA	NA	NA	83	NM_001313927	11890	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	0.010000	0.567164	
mm_53341.1	chr6	129267916	129268116	+	1	NA	NA	NA	7353	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.010000	0.427861	
mm_99596.1	chr11	104329676	104329876	+	1	NA	NA	NA	98340	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.015000	0.557214	
mm_123233.1	chr14	60087272	60087472	-	1	NA	NA	NA	-538	NM_015803	50769	Mm.319599	NM_015803	ENSMUSG00000021983	Atp8a2	AI415030|Atpc1b|agil|wl	ATPase, aminophospholipid transporter-like, class I, type 8A, member 2	protein-coding	0.025000	0.532338	
mm_9243.1	chr1	171344327	171344527	-	1	NA	NA	NA	1218	NM_001242580	27045	Mm.12915	NM_012049	ENSMUSG00000013997	Nit1	AI255805|ESTM30|W57327	nitrilase 1	protein-coding	0.015000	0.517413	
mm_44739.1	chr5	31192628	31192828	-	1	NA	NA	NA	411	NM_001127355	13667	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	0.075000	0.661692	
mm_63749.1	chr7	131037209	131037409	+	1	NA	NA	NA	5233	NM_007769	12945	Mm.4138	NM_007769	ENSMUSG00000047517	Dmbt1	CRP|CRP-[a]|CRP-[b]|Crpd|DBMT1|gp300|p80	deleted in malignant brain tumors 1	protein-coding	0.010000	0.537313	
mm_68450.1	chr7	110060712	110060912	-	1	NA	NA	NA	-890	NM_009281	20841	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0.015000	0.402985	
mm_130613.1	chr15	99931694	99931894	-	1	NA	NA	NA	-136	NM_028180	72277	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	0.045000	0.582090	
mm_14517.1	chr2	132577928	132578128	+	1	NA	NA	NA	220	NM_001291050	74182	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	0.170000	0.820896	
mm_55529.1	chr6	70726600	70726800	-	1	NA	NA	NA	65475	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.020000	0.512438	
mm_25470.1	chr3	108655476	108655676	+	1	NA	NA	NA	1586	NM_001177770	229725	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	0.010000	0.472637	
mm_89392.1	chr10	89873147	89873347	+	1	NA	NA	NA	-262	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.085000	0.661692	
mm_120248.1	chr14	62992371	62992571	+	1	NA	NA	NA	-5606	NM_001039125	654465	Mm.424929	NM_001039125	ENSMUSG00000075573	Defb47	Defb41|EG654465	defensin beta 47	protein-coding	0.010000	0.497512	
mm_77673.1	chr8	124897671	124897871	-	1	NA	NA	NA	-66	NM_198103	102058	Mm.347360	NM_198103	ENSMUSG00000074030	Exoc8	AI414418|EXO84|Exo84p|R74783|SEC84	exocyst complex component 8	protein-coding	0.150000	0.741294	-93(GCCTTAAGACGC,+,0.00)
mm_90457.1	chr10	127728478	127728678	+	1	NA	NA	NA	3186	NM_009312	21334	Mm.2374	NM_009312	ENSMUSG00000025400	Tac2	PPT-B|Tac3	tachykinin 2	protein-coding	0.020000	0.577114	
mm_39699.1	chr5	27181358	27181558	+	1	NA	NA	NA	-80477	NM_001136060	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.005000	0.432836	
mm_278.1	chr1	21249712	21249912	+	1	NA	NA	NA	9227	NM_010356	14859	Mm.394593	NM_010356	ENSMUSG00000025934	Gsta3	Gst2-3	glutathione S-transferase, alpha 3	protein-coding	0.015000	0.492537	-96(CTTTTAAGAGCA,+,0.00)
mm_140110.1	chr17	78573845	78574045	+	1	NA	NA	NA	65882	NM_028813	74199	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik	vitrin	protein-coding	0.025000	0.487562	
mm_65589.1	chr7	27311128	27311328	-	1	NA	NA	NA	22420	NM_001113549	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.015000	0.572139	
mm_93883.1	chr10	125328263	125328463	-	1	NA	NA	NA	172	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.035000	0.482587	
mm_170357.1	chr18	52529251	52529451	-	1	NA	NA	NA	370	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.080000	0.671642	
mm_6450.1	chr1	74013125	74013325	-	1	NA	NA	NA	111222	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.015000	0.517413	-35(AGGCTTAAAAGC,-,0.00),-33(GCTTAAAAGCCG,+,0.00)
mm_97612.1	chr11	78951124	78951324	+	1	NA	NA	NA	25933	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.025000	0.592040	
mm_61901.1	chr7	90130016	90130216	+	1	NA	NA	NA	-116	NM_001252523	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.170000	0.786070	
mm_15818.1	chr2	164557640	164557840	+	1	NA	NA	NA	-4976	NM_026323	67701	Mm.27289	NM_026323	ENSMUSG00000017723	Wfdc2	1600023A02Rik|HE4|WAP5	WAP four-disulfide core domain 2	protein-coding	0.015000	0.477612	
mm_164132.1	chr15	43994486	43994686	-	1	NA	NA	NA	-124557	NM_175502	239408	Mm.41219	NM_175502	ENSMUSG00000054409	Tmem74	AA549547|B230382K22Rik	transmembrane protein 74	protein-coding	0.005000	0.457711	
mm_156379.1	chrX	139672013	139672213	+	1	NA	NA	NA	-12883	NM_001081499	245638	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	0.015000	0.338308	67(TGCTTTAAAAGT,-,0.00),68(GCTTTAAAAGTG,+,0.00)
mm_130440.1	chr15	98481869	98482069	-	1	NA	NA	NA	714	NM_010679	16770	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0.005000	0.522388	
mm_114399.1	chr13	63301173	63301373	+	1	NA	NA	NA	10	NR_037235	100526474		NR_037235	ENSMUSG00000092741	Mir3074-1	mmu-mir-3074-1	microRNA 3074-1	ncRNA	0.020000	0.572139	
mm_6502.1	chr1	74295261	74295461	-	1	NA	NA	NA	8975	NM_027154	69660	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.010000	0.601990	
mm_93701.1	chr10	118082973	118083173	-	1	NA	NA	NA	-58714	NM_001162904	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.000000	0.412935	
mm_10043.1	chr1	193035693	193035893	-	1	NA	NA	NA	-18	NM_181546	329324	Mm.76710	NM_181546	ENSMUSG00000016200	Syt14	B230320I09Rik|sytXIV	synaptotagmin XIV	protein-coding	0.115000	0.771144	
mm_168253.1	chr10	8559506	8559706	-	1	NA	NA	NA	-40781	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.015000	0.487562	-34(CCCTTTATAAGA,-,0.00)
mm_134546.1	chr16	19883794	19883994	-	1	NA	NA	NA	380	NR_027896	68162	Mm.35159	NR_015488		A930003A15Rik	AI853191	RIKEN cDNA A930003A15 gene	ncRNA	0.010000	0.517413	
mm_158913.1	chr1	46012163	46012363	-	1	NA	NA	NA	18174	NR_037690	212225	Mm.78540	NM_172504	ENSMUSG00000044457	Stk-ps2	4930509O22|EG212225|Gm4776	serine/threonine kinase 2	pseudo	0.040000	0.487562	-22(ACCTATAAAAAG,-,0.00)
mm_16165.1	chr2	172472446	172472646	+	1	NA	NA	NA	-8	NM_029608	76426	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	0.025000	0.592040	
mm_71916.1	chr8	70139374	70139574	+	1	NA	NA	NA	-25	NM_001145552	72368	Mm.644	NM_001145552	ENSMUSG00000002345	Borcs8	2310045N01Rik|Mef2bnb	BLOC-1 related complex subunit 8	protein-coding	0.050000	0.497512	
mm_12496.1	chr2	71805879	71806079	+	1	NA	NA	NA	19040	NM_001277970	16403	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	0.010000	0.457711	
mm_140741.1	chr17	15829732	15829932	-	1	NA	NA	NA	-3246	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.030000	0.572139	
mm_26928.1	chr3	20259406	20259606	-	1	NA	NA	NA	16227	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.010000	0.442786	
mm_123476.1	chr14	65975638	65975838	-	1	NA	NA	NA	7255	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.045000	0.572139	
mm_28384.1	chr3	90000699	90000899	-	1	NA	NA	NA	2039	NR_045749	100503469	Mm.440636	NR_045749	ENSMUSG00000105552	Gm19710	-	predicted gene, 19710	ncRNA	0.015000	0.527363	
mm_154172.1	chr19	58730019	58730219	-	1	NA	NA	NA	1232	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.005000	0.537313	
mm_22397.1	chr2	181236025	181236225	-	1	NA	NA	NA	5902	NM_183162	229003	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.035000	0.567164	
mm_41276.1	chr5	89443327	89443527	+	1	NA	NA	NA	14471	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.015000	0.532338	-41(ACTTATAAAGAC,+,0.00)
mm_157678.1	chrX	59567258	59567458	-	1	NA	NA	NA	18214	NM_001290414	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding	0.125000	0.701493	
mm_125612.1	chr15	61985448	61985648	+	1	NA	NA	NA	207	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.080000	0.582090	-32(CAGTATAAAAGA,-,0.00)
mm_12300.1	chr2	69093716	69093916	+	1	NA	NA	NA	-41984	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.015000	0.348259	
mm_116237.1	chr13	33843308	33843508	-	1	NA	NA	NA	0	NM_001045535	435350	Mm.263418	NM_001045535	ENSMUSG00000069248	Serpinb6e	Gm11396|OTTMUSG00000000720|SPI3B|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6e	protein-coding	0.005000	0.537313	
mm_125434.1	chr15	44457394	44457594	+	1	NA	NA	NA	-59	NM_138674	192190	Mm.211494	NM_138674	ENSMUSG00000038725	Pkhd1l1	AB055648|PKHDL1	polycystic kidney and hepatic disease 1-like 1	protein-coding	0.045000	0.651741	
mm_139643.1	chr17	57377531	57377731	+	1	NA	NA	NA	18945	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.348259	
mm_143498.1	chr17	71475797	71475997	-	1	NA	NA	NA	-554	NM_028887	74355	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0.090000	0.626866	
mm_76450.1	chr8	85081235	85081435	-	1	NA	NA	NA	372	NM_001001493	414077	Mm.35790	NM_001001493	ENSMUSG00000059355	Wdr83os	-	WD repeat domain 83 opposite strand	protein-coding	0.020000	0.587065	
mm_70783.1	chr8	22476627	22476827	+	1	NA	NA	NA	27	NM_011394	20516	Mm.323901	NM_011394	ENSMUSG00000037656	Slc20a2	MolPit2|Pit-2|Pit2|Ram-1|Ram1	solute carrier family 20, member 2	protein-coding	0.185000	0.830846	
mm_79452.1	chr9	56120464	56120664	+	1	NA	NA	NA	30588	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.025000	0.601990	
mm_38832.1	chr4	149150488	149150688	-	1	NA	NA	NA	-12988	NM_027263	69928	Mm.260893	NM_027263	ENSMUSG00000073705	Apitd1	2610040C18Rik|2810407L01Rik|CENP-S	apoptosis-inducing, TAF9-like domain 1	protein-coding	0.025000	0.577114	
mm_59073.1	chr7	19514430	19514630	+	1	NA	NA	NA	-4201	NM_027116	69547	Mm.77325	NM_027116	ENSMUSG00000060621	Nkpd1	2310015G09Rik	NTPase, KAP family P-loop domain containing 1	protein-coding	0.035000	0.616915	-89(GCCTTTAGGGAG,+,0.00)
mm_34256.1	chr4	141382312	141382512	+	1	NA	NA	NA	14220	NM_001085513	277743	Mm.294614	NM_001085513	ENSMUSG00000006218	Fam131c	Gm693	family with sequence similarity 131, member C	protein-coding	0.070000	0.656716	
mm_145965.1	chr18	67794483	67794683	+	1	NA	NA	NA	5360	NR_045376	75286	Mm.307315	NR_045376		4930549G23Rik	-	RIKEN cDNA 4930549G23 gene	ncRNA	0.005000	0.363184	
mm_102521.1	chr11	60879316	60879516	-	1	NA	NA	NA	-378	NM_001168507	216821	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	0.030000	0.452736	
mm_51292.1	chr6	72305836	72306036	+	1	NA	NA	NA	1326	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.015000	0.527363	51(ACCTATATAAGT,-,0.00)
mm_30330.1	chr3	151732006	151732206	-	1	NA	NA	NA	17853	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.005000	0.338308	-15(TCTTTTAAACTG,+,0.00)
mm_80028.1	chr9	68653650	68653850	+	1	NA	NA	NA	-36	NM_001289917	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.070000	0.542289	
mm_115205.1	chr13	109116281	109116481	+	1	NA	NA	NA	-208363	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.055000	0.547264	
mm_114119.1	chr13	55105215	55105415	+	1	NA	NA	NA	6	NM_012017	26919	Mm.22795	NM_012017	ENSMUSG00000021481	Zfp346	Jaz|Znf346	zinc finger protein 346	protein-coding	0.100000	0.656716	
mm_119504.1	chr14	47380274	47380474	+	1	NA	NA	NA	6514	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.005000	0.611940	
mm_146154.1	chr18	75000437	75000637	+	1	NA	NA	NA	60	NM_001002239	319195	Mm.276337	NM_001002239	ENSMUSG00000062328	Rpl17	-	ribosomal protein L17	protein-coding	0.100000	0.636816	
mm_36599.1	chr4	88880117	88880317	-	1	NA	NA	NA	-16	NM_177348	230405	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	0.020000	0.497512	
mm_57189.1	chr6	122849392	122849592	-	1	NA	NA	NA	6665	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.000000	0.348259	
mm_99378.1	chr11	101986985	101987185	+	1	NA	NA	NA	29	NM_029287	75437	Mm.108632	NM_029287	ENSMUSG00000010841	1700006E09Rik	-	RIKEN cDNA 1700006E09 gene	protein-coding	0.010000	0.457711	
mm_100237.1	chr11	117232192	117232392	+	1	NA	NA	NA	32631	NM_001113486	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.065000	0.676617	-95(GGATATTAAAAG,-,0.00)
mm_117701.1	chr13	95034168	95034368	-	1	NA	NA	NA	57924	NM_172590	218460	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.035000	0.552239	
mm_78307.1	chr9	22655038	22655238	+	1	NA	NA	NA	179423	NM_178415	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.025000	0.492537	
mm_24323.1	chr3	89436617	89436817	+	1	NA	NA	NA	13	NM_146131	229534	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	0.035000	0.562189	
mm_167704.1	chr9	92275699	92275899	+	1	NA	NA	NA	197	NM_001195084	18828	Mm.10306	NM_008880	ENSMUSG00000032372	Plscr2	-	phospholipid scramblase 2	protein-coding	0.005000	0.432836	
mm_93368.1	chr10	105296447	105296647	-	1	NA	NA	NA	277932	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.005000	0.278607	
mm_26796.1	chr3	9833528	9833728	-	1	NA	NA	NA	51	NM_053182	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.155000	0.751244	
mm_162395.1	chr1	80660259	80660459	+	1	NA	NA	NA	4993	NM_001285927	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.000000	0.323383	
mm_104244.1	chr11	88841354	88841554	-	1	NA	NA	NA	10049	NM_009648	11640	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	0.020000	0.507463	
mm_169137.1	chr13	60855743	60855943	+	1	NA	NA	NA	8573	NM_178098	214639	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	0.030000	0.417910	-49(CTTTAAAGAGAG,+,0.00)
mm_170725.1	chr2	150500773	150500973	-	1	NA	NA	NA	-15810	NM_001034900	545471	Mm.451002	NM_001034900	ENSMUSG00000074731	Zfp345	OTTMUSG00000015743	zinc finger protein 345	protein-coding	0.085000	0.601990	
mm_34322.1	chr4	141821691	141821891	+	1	NA	NA	NA	4214	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.030000	0.582090	
mm_160723.1	chr10	69987566	69987766	+	1	NA	NA	NA	62134	NM_009670	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.035000	0.557214	
mm_148710.1	chr19	5802277	5802477	+	1	NA	NA	NA	295	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.010000	0.358209	-35(CCTTTTAGAACT,+,0.00)
mm_58391.1	chr7	3206844	3207044	+	1	NA	NA	NA	-11682	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.000000	0.477612	
mm_54524.1	chr6	35998570	35998770	-	1	NA	NA	NA	-389414	NM_203491	243764	Mm.448632	NM_203491	ENSMUSG00000045613	Chrm2	AChR-M2|Chrm-2|M2	cholinergic receptor, muscarinic 2, cardiac	protein-coding	0.000000	0.417910	
mm_72766.1	chr8	85601947	85602147	+	1	NA	NA	NA	-46776	NM_019794	56445	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0.015000	0.542289	
mm_63900.1	chr7	139086167	139086367	+	1	NA	NA	NA	266	NM_011993	26757	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	0.105000	0.716418	32(CCTTTTCTGCCC,+,0.00)
mm_55236.1	chr6	52245679	52245879	-	1	NA	NA	NA	31	NM_010450	15396	Mm.26954	NM_010450	ENSMUSG00000038210	Hoxa11	Hox-1.9|Hoxa-11	homeobox A11	protein-coding	0.040000	0.517413	
mm_82694.1	chr9	22376160	22376360	-	1	NA	NA	NA	2963	NR_030448	751551		NR_030448	ENSMUSG00000076117	Mir680-2	Mirn680-2	microRNA 680-2	ncRNA	0.010000	0.492537	
mm_26750.1	chr3	7613629	7613829	-	1	NA	NA	NA	31	NM_008371	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.030000	0.452736	
mm_41779.1	chr5	103715246	103715446	+	1	NA	NA	NA	-38816	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.010000	0.487562	32(TGGCTTTTAAGG,-,0.00),33(GGCTTTTAAGGA,-,0.00),34(GCTTTTAAGGAC,+,0.00)
mm_75977.1	chr8	72160449	72160649	-	1	NA	NA	NA	-651	NM_023126	17274	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	0.040000	0.442786	
mm_63434.1	chr7	127478925	127479125	+	1	NA	NA	NA	-6196	NM_010183	14123	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.095000	0.706468	-96(TCGCCTTAAAGG,-,0.00),-95(CGCCTTAAAGGG,-,0.00),-93(CCTTAAAGGGAC,+,0.00),44(CTGTTTTAAAGA,-,0.00)
mm_3559.1	chr1	150423849	150424049	+	1	NA	NA	NA	-30894	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.020000	0.412935	
mm_109950.1	chr12	11386780	11386980	-	1	NA	NA	NA	49769	NM_012038	26950	Mm.27005	NM_012038	ENSMUSG00000054459	Vsnl1	VILIP|Vnsl1	visinin-like 1	protein-coding	0.020000	0.507463	
mm_137996.1	chr17	33641101	33641301	+	1	NA	NA	NA	3106	NR_028279	378460	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	0.005000	0.507463	
mm_140669.1	chr17	12916299	12916499	-	1	NA	NA	NA	70	NM_013686	21454	Mm.229342	NM_013686	ENSMUSG00000068039	Tcp1	AI528772|CCT|Cct1|Ccta|TRic|Tcp-1|Tp63|c-cpn|p63	t-complex protein 1	protein-coding	0.115000	0.681592	
mm_50349.1	chr6	48589470	48589670	+	1	NA	NA	NA	125	NM_183309	330305	Mm.123868	NM_183309	ENSMUSG00000052730	Gm5111	A630038D02|EG330305	predicted gene 5111	protein-coding	0.020000	0.497512	
mm_130741.1	chr15	101255935	101256135	-	1	NA	NA	NA	-10811	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.005000	0.527363	
mm_168030.1	chrY	90738422	90738622	-	1	NA	NA	NA	16528	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.482587	
mm_109830.1	chr12	3972773	3972973	-	1	NA	NA	NA	17928	NM_001278583	18976	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	0.005000	0.472637	
mm_39754.1	chr5	29735727	29735927	+	1	NA	NA	NA	-71	NM_001037940	23950	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0.080000	0.611940	
mm_41151.1	chr5	87929687	87929887	+	1	NA	NA	NA	4154	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.020000	0.452736	
mm_103729.1	chr11	79675028	79675228	-	1	NA	NA	NA	-42	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	0.030000	0.532338	
mm_72968.1	chr8	92855310	92855510	+	1	NA	NA	NA	60	NM_173014	270084	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	A330042H22|Aytl1|Aytl1a|lpafat1	lysophosphatidylcholine acyltransferase 2	protein-coding	0.105000	0.681592	
mm_40533.1	chr5	57936940	57937140	+	1	NA	NA	NA	218959	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.005000	0.358209	-65(TCCCATAAAAAC,-,0.00)
mm_74147.1	chr8	123292068	123292268	+	1	NA	NA	NA	26408	NM_016925	14087	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	0.000000	0.348259	
mm_41500.1	chr5	92326711	92326911	+	1	NA	NA	NA	1268	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.025000	0.472637	
mm_106077.1	chr11	116174379	116174579	-	1	NA	NA	NA	-6301	NM_172571	217335	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.030000	0.452736	-91(CATTTTATAGTC,+,0.00)
mm_164771.1	chr17	88113269	88113469	-	1	NA	NA	NA	-12143	NM_001190356	225058	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.015000	0.447761	
mm_105572.1	chr11	106588776	106588976	-	1	NA	NA	NA	24054	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.020000	0.537313	
mm_163704.1	chr13	106191310	106191510	-	1	NA	NA	NA	745505	NM_029665	76582	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.010000	0.333333	
mm_31177.1	chr4	43506249	43506449	+	1	NA	NA	NA	-677	NM_139305	230099	Mm.283682	NM_139305	ENSMUSG00000028463	Car9	CAIX|Ca9|MN/CA9	carbonic anhydrase 9	protein-coding	0.015000	0.457711	
mm_28431.1	chr3	90465695	90465895	-	1	NA	NA	NA	71	NM_008727	18160	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.095000	0.651741	
mm_9056.1	chr1	167340431	167340631	-	1	NA	NA	NA	-9460	NM_019993	56752	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.095000	0.592040	
mm_164790.1	chr18	12741223	12741423	+	1	NA	NA	NA	-32	NM_001042419	71132	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.080000	0.646766	-10(GGGTATAAATAG,-,0.00)
mm_17642.1	chr2	31163467	31163667	-	1	NA	NA	NA	11251	NM_178760	277463	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0.025000	0.522388	
mm_1424.1	chr1	67174340	67174540	+	1	NA	NA	NA	51413	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.025000	0.482587	
mm_51937.1	chr6	91699015	91699215	+	1	NA	NA	NA	15048	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.005000	0.547264	
mm_7545.1	chr1	124504094	124504294	-	1	NA	NA	NA	-458635	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.427861	
mm_10997.1	chr2	26380616	26380816	+	1	NA	NA	NA	-63	NM_001290419	227644	Mm.207460	NM_172339	ENSMUSG00000036281	Snapc4	5730436L13Rik	small nuclear RNA activating complex, polypeptide 4	protein-coding	0.050000	0.587065	
mm_36112.1	chr4	58878987	58879187	-	1	NA	NA	NA	33638	NM_172381	230249	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|mKIAA0368	expressed sequence AI314180	protein-coding	0.020000	0.373134	-18(ACGTATAAAAAG,-,0.00)
mm_138370.1	chr17	35001215	35001415	+	1	NA	NA	NA	408	NM_011690	22321	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.105000	0.711443	
mm_59872.1	chr7	30263077	30263277	+	1	NA	NA	NA	-16917	NR_144498	108167416	Mm.471845	NR_144498		LOC108167416	-	uncharacterized LOC108167416	ncRNA	0.035000	0.497512	
mm_129207.1	chr15	76518450	76518650	-	1	NA	NA	NA	3579	NM_130893	170729	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.040000	0.656716	
mm_108181.1	chr12	76497877	76498077	+	1	NA	NA	NA	35235	NR_039597	100628604		NR_039597	ENSMUSG00000092738	Mir5135	mir-5135|mmu-mir-5135|mu-mir-5135	microRNA 5135	ncRNA	0.020000	0.552239	
mm_36385.1	chr4	77154512	77154712	-	1	NA	NA	NA	1057283	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.010000	0.447761	
mm_36428.1	chr4	82293587	82293787	-	1	NA	NA	NA	212092	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.020000	0.492537	
mm_98614.1	chr11	95843133	95843333	+	1	NA	NA	NA	-12	NM_001284397	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.015000	0.532338	
mm_110822.1	chr12	72408749	72408949	-	1	NA	NA	NA	205	NM_001286448	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.060000	0.651741	
mm_83545.1	chr9	46235588	46235788	-	1	NA	NA	NA	-52	NM_001289756	11814	Mm.390161	NM_023114	ENSMUSG00000032081	Apoc3	apo-CIII|apoC-III	apolipoprotein C-III	protein-coding	0.010000	0.577114	
mm_60085.1	chr7	34388538	34388738	+	1	NA	NA	NA	902	NM_025948	67070	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral	LSM14A mRNA processing body assembly factor	protein-coding	0.035000	0.502488	
mm_124002.1	chr14	75958330	75958530	-	1	NA	NA	NA	3427	NM_026214	67516	Mm.390712	NM_026214	ENSMUSG00000046523	Kctd4	2210017A09Rik|AU017169	potassium channel tetramerisation domain containing 4	protein-coding	0.005000	0.298507	
mm_76811.1	chr8	104442720	104442920	-	1	NA	NA	NA	227	NM_001013380	234663	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	0.115000	0.736318	
mm_115039.1	chr13	99434066	99434266	+	1	NA	NA	NA	-21340	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.005000	0.432836	
mm_129174.1	chr15	76269737	76269937	-	1	NA	NA	NA	2	NR_045747	100038659	Mm.448549	NR_045747		Mirt2	ENSMUSG00000075583|Gm10872|Gm24562	myocardial infraction associated transcript 2	ncRNA	0.025000	0.477612	
mm_85137.1	chr9	95785433	95785633	-	1	NA	NA	NA	-35175	NM_011643	22063	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0.040000	0.487562	
mm_159044.1	chr1	181511346	181511546	-	1	NA	NA	NA	5	NM_207280	403180	Mm.220754	NM_207280	ENSMUSG00000050625	Ccdc121	6530421E24Rik|Gm755	coiled-coil domain containing 121	protein-coding	0.015000	0.567164	
mm_147890.1	chr18	65040602	65040802	-	1	NA	NA	NA	17175	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.010000	0.512438	
mm_163983.1	chr14	59419103	59419303	-	1	NA	NA	NA	21677	NM_001320725	107303348		NM_001320725		Setdb2-phf11c	-	Setdb2-Phf11c readthrough	protein-coding	0.015000	0.368159	
mm_121580.1	chr14	123660127	123660327	+	1	NA	NA	NA	87	NM_145467	223272	Mm.383176	NM_145467	ENSMUSG00000032925	Itgbl1	B930011D01Rik	integrin, beta-like 1	protein-coding	0.015000	0.606965	
mm_92805.1	chr10	81378286	81378486	-	1	NA	NA	NA	-16	NM_019757	56371	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy/cell division cycle 20 related 1 (Drosophila)	protein-coding	0.150000	0.756219	
mm_101812.1	chr11	46388469	46388669	-	1	NA	NA	NA	946	NM_001281968	16428	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	0.025000	0.542289	
mm_150064.1	chr19	29386219	29386419	+	1	NA	NA	NA	18881	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.020000	0.422886	
mm_101134.1	chr11	12464732	12464932	-	1	NA	NA	NA	128	NM_172496	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.150000	0.746269	
mm_172637.1	chr8	20874574	20874774	-	1	NA	NA	NA	-1825	NR_002880	654455	Mm.424927	NR_002880		Gm21944	Defb48-ps	defensin beta 48 pseudogene	pseudo	0.030000	0.537313	
mm_86660.1	chr10	17796114	17796314	+	1	NA	NA	NA	-5	NM_138628	378431	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	0.025000	0.522388	
mm_120263.1	chr14	63082327	63082527	+	1	NA	NA	NA	27354	NR_046019	72609	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.010000	0.472637	
mm_84275.1	chr9	62809757	62809957	-	1	NA	NA	NA	1791	NM_010193	14155	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.000000	0.288557	-81(GGGCTTTAAAGC,-,0.00),9(AACCATAAAAGC,-,0.00)
mm_41635.1	chr5	97195485	97195685	+	1	NA	NA	NA	-83989	NM_198422	231474	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.040000	0.557214	
mm_42861.1	chr5	122224315	122224515	+	1	NA	NA	NA	14128	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.005000	0.432836	
mm_22316.1	chr2	180443725	180443925	-	1	NA	NA	NA	-17153	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.005000	0.462687	
mm_23328.1	chr3	53725356	53725556	+	1	NA	NA	NA	-68101	NM_172862	242022	Mm.38378	NM_172862	ENSMUSG00000037016	Frem2	6030440P17Rik|8430406N05Rik|Gm409|b2b1562Clo|my|ne|nv1	Fras1 related extracellular matrix protein 2	protein-coding	0.020000	0.482587	
mm_80003.1	chr9	67733846	67734046	+	1	NA	NA	NA	-4369	NR_106101	102465716		NR_106101	ENSMUSG00000098446	Mir7242	Gm27809|mmu-mir-7242	microRNA 7242	ncRNA	0.040000	0.582090	
mm_59222.1	chr7	24611232	24611432	+	1	NA	NA	NA	4	NM_001102613	232970	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|ENSMUSG00000061511|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	0.065000	0.616915	
mm_32589.1	chr4	111415149	111415349	+	1	NA	NA	NA	243	NM_026279	67621	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0.130000	0.706468	
mm_77621.1	chr8	123952771	123952971	-	1	NA	NA	NA	-3606	NM_172288	234865	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	0.010000	0.432836	
mm_133432.1	chr16	87661326	87661526	+	1	NA	NA	NA	-37528	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.010000	0.527363	
mm_21890.1	chr2	166155355	166155555	-	1	NA	NA	NA	-170	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.090000	0.597015	
mm_101144.1	chr11	16508068	16508268	-	1	NA	NA	NA	316	NM_011343	20335	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0.070000	0.567164	
mm_33718.1	chr4	134052624	134052824	+	1	NA	NA	NA	-15728	NM_001162970	230806	Mm.240080	NM_001162970	ENSMUSG00000012123	Aim1l	-	absent in melanoma 1-like	protein-coding	0.030000	0.587065	-98(GTCTATTTAAGG,-,0.00)
mm_97531.1	chr11	78512207	78512407	+	1	NA	NA	NA	11	NM_026389	67811	Mm.197493	NM_026389	ENSMUSG00000001100	Poldip2	1300003F06Rik|Pdip38	polymerase (DNA-directed), delta interacting protein 2	protein-coding	0.125000	0.771144	
mm_22331.1	chr2	180701922	180702122	-	1	NA	NA	NA	80	NM_011805	23856	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.100000	0.636816	
mm_14167.1	chr2	126673501	126673701	+	1	NA	NA	NA	1991	NM_001271469	14391	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.045000	0.462687	
mm_42805.1	chr5	121742343	121742543	+	1	NA	NA	NA	30834	NM_009125	20239	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.000000	0.402985	86(CCCTCTTAAAGA,-,0.00),87(CCTCTTAAAGAT,+,0.00)
mm_16694.1	chr2	6884883	6885083	-	1	NA	NA	NA	13	NM_010160	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.025000	0.497512	
mm_43221.1	chr5	129786924	129787124	+	1	NA	NA	NA	229	NM_133900	100678	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	0.060000	0.567164	
mm_79098.1	chr9	46242945	46243145	+	1	NA	NA	NA	2201	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.020000	0.587065	
mm_14937.1	chr2	151543784	151543984	+	1	NA	NA	NA	1401	NM_001302078	14225	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.015000	0.532338	
mm_30795.1	chr4	19818633	19818833	+	1	NA	NA	NA	6	NM_028746	74087	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0.005000	0.338308	
mm_131968.1	chr16	24721762	24721962	+	1	NA	NA	NA	7	NM_001145954	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.010000	0.467662	71(GTGTATAAAAGA,-,0.00)
mm_82043.1	chr9	122349487	122349687	+	1	NA	NA	NA	-2029	NM_026179	67469	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0.010000	0.477612	
mm_145539.1	chr18	60807457	60807657	+	1	NA	NA	NA	3708	NM_010545	16149	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	0.025000	0.507463	
mm_48840.1	chr5	149366964	149367164	-	1	NA	NA	NA	-44742	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.005000	0.452736	
mm_155257.1	chrX	57224044	57224244	+	1	NA	NA	NA	12001	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.010000	0.522388	
mm_79364.1	chr9	54469556	54469756	+	1	NA	NA	NA	31970	NM_172771	235380	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.005000	0.447761	
mm_1516.1	chr1	72711178	72711378	+	1	NA	NA	NA	18	NM_009084	19981	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0.100000	0.567164	
mm_138151.1	chr17	34208685	34208885	+	1	NA	NA	NA	4306	NM_011530	21355	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.025000	0.587065	
mm_169753.1	chr15	90764596	90764796	-	1	NA	NA	NA	-85308	NM_001033851	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0.060000	0.552239	
mm_137378.1	chr17	25718128	25718328	+	1	NA	NA	NA	1056	NM_022422	64337	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	0.010000	0.567164	
mm_40045.1	chr5	33859812	33860012	+	1	NA	NA	NA	16800	NM_001177884	107823	Mm.19892	NM_175231	ENSMUSG00000057406	Whsc1	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|NSD2|Whsc1l|mKIAA1090	Wolf-Hirschhorn syndrome candidate 1 (human)	protein-coding	0.000000	0.353234	
mm_50990.1	chr6	63255999	63256199	+	1	NA	NA	NA	-758	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.105000	0.701493	-42(CCATTTCTAGGC,+,0.00)
mm_147994.1	chr18	67669125	67669325	-	1	NA	NA	NA	27626	NM_134138	107047	Mm.150701	NM_134138	ENSMUSG00000024537	Psmg2	1700017I17Rik|AW545363|Clast3|Tnfsf5ip1	proteasome (prosome, macropain) assembly chaperone 2	protein-coding	0.005000	0.343284	
mm_23155.1	chr3	40531368	40531568	+	1	NA	NA	NA	-8556	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.040000	0.631841	
mm_23546.1	chr3	61365914	61366114	+	1	NA	NA	NA	1507	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.015000	0.467662	
mm_160124.1	chr7	28290942	28291142	-	1	NA	NA	NA	92	NM_175033	280621	Mm.212777	NM_175033	ENSMUSG00000046750	Selenov	Selv	selenoprotein V	protein-coding	0.095000	0.676617	
mm_124670.1	chr15	6391340	6391540	+	1	NA	NA	NA	4692	NM_001310446	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.000000	0.393035	
mm_36564.1	chr4	87230356	87230556	-	1	NA	NA	NA	84	NM_172426	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	0.170000	0.791045	
mm_167284.1	chr8	40423450	40423650	+	1	NA	NA	NA	-265	NM_178395	70546	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik	zinc finger, DHHC domain containing 2	protein-coding	0.080000	0.691542	
mm_124227.1	chr14	100619260	100619460	-	1	NA	NA	NA	-469564	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.025000	0.462687	
mm_8676.1	chr1	156718905	156719105	-	1	NA	NA	NA	-95	NM_145413	215015	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	0.155000	0.830846	
mm_29986.1	chr3	135423997	135424197	-	1	NA	NA	NA	-664	NM_025902	67006	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0.010000	0.432836	
mm_4578.1	chr1	177983372	177983572	+	1	NA	NA	NA	-7963	NM_001034899	545391	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	0.100000	0.736318	
mm_157440.1	chrX	39014014	39014214	-	1	NA	NA	NA	241334	NM_183126	77883	Mm.113311	NM_183126	ENSMUSG00000051361	6030498E09Rik	-	RIKEN cDNA 6030498E09 gene	protein-coding	0.000000	0.368159	
mm_148380.1	chr19	3282953	3283153	+	1	NA	NA	NA	6	NM_172252	353242	Mm.74084	NM_172252	ENSMUSG00000024829	Mrpl21	BC028768	mitochondrial ribosomal protein L21	protein-coding	0.065000	0.597015	
mm_43978.1	chr5	146261061	146261261	+	1	NA	NA	NA	29486	NM_153599	264064	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.075000	0.552239	
mm_138475.1	chr17	35194500	35194700	+	1	NA	NA	NA	93	NM_008518	16994	Mm.1715	NM_008518	ENSMUSG00000024399	Ltb	AI662801|LTbeta|Tnfc|Tnfsf3|Tnlg1c|p33	lymphotoxin B	protein-coding	0.030000	0.651741	
mm_165152.1	chr2	21178808	21179008	+	1	NA	NA	NA	26457	NM_027728	71233	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.010000	0.542289	
mm_157415.1	chrX	38454709	38454909	-	1	NA	NA	NA	1651	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.000000	0.353234	-57(CTTCTTAGAGGC,+,0.00)
mm_100681.1	chr11	3471409	3471609	-	1	NA	NA	NA	-8519	NR_037301	100499518		NR_037301	ENSMUSG00000095323	Mir3470a	mmu-mir-3470a	microRNA 3470a	ncRNA	0.045000	0.562189	
mm_77466.1	chr8	122424949	122425149	-	1	NA	NA	NA	2964	NM_145834	234836	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.030000	0.616915	
mm_170475.1	chr19	11469347	11469547	+	1	NA	NA	NA	79	NM_028595	73656	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.015000	0.512438	
mm_12059.1	chr2	59338655	59338855	+	1	NA	NA	NA	47927	NR_040510	76676	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.035000	0.522388	
mm_29839.1	chr3	129822399	129822599	-	1	NA	NA	NA	6	NM_009102	20132	Mm.278758	NM_009102	ENSMUSG00000028012	Rrh	-	retinal pigment epithelium derived rhodopsin homolog	protein-coding	0.030000	0.462687	
mm_133411.1	chr16	85056323	85056523	+	1	NA	NA	NA	84212	NR_045889	100038614	Mm.441351	NR_045889		Gm10791	ENSMUSG00000074933	predicted gene 10791	ncRNA	0.040000	0.582090	
mm_121487.1	chr14	121239581	121239781	+	1	NA	NA	NA	139549	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.020000	0.462687	
mm_66584.1	chr7	45385700	45385900	-	1	NA	NA	NA	9942	NM_009224	20637	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	0.010000	0.383085	
mm_117394.1	chr13	73677935	73678135	-	1	NA	NA	NA	-12	NM_001168643	22598	Mm.30370	NM_011730	ENSMUSG00000021612	Slc6a18	B0AT3|D630001K16Rik|Xt2|Xtrp2	solute carrier family 6 (neurotransmitter transporter), member 18	protein-coding	0.005000	0.507463	
mm_135080.1	chr16	34263094	34263294	-	1	NA	NA	NA	250833	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.030000	0.557214	
mm_129376.1	chr15	78120115	78120315	-	1	NA	NA	NA	-935	NM_007583	12300	Mm.277338	NM_007583	ENSMUSG00000019146	Cacng2	AW060990|B230105C07Rik|B930041E13Rik|stargazer|stargazin|stg|wag|waggler	calcium channel, voltage-dependent, gamma subunit 2	protein-coding	0.035000	0.621891	
mm_163812.1	chr14	19416248	19416448	+	1	NA	NA	NA	186239	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.010000	0.333333	
mm_139279.1	chr17	48247697	48247897	+	1	NA	NA	NA	68	NM_021407	58218	Mm.302438	NM_021407	ENSMUSG00000041754	Trem3	BB134760	triggering receptor expressed on myeloid cells 3	protein-coding	0.020000	0.562189	
mm_23304.1	chr3	52649870	52650070	+	1	NA	NA	NA	-89754	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	0.005000	0.452736	-32(CCTTATAAATGA,+,0.00)
mm_105250.1	chr11	102353144	102353344	-	1	NA	NA	NA	12037	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.030000	0.577114	
mm_60272.1	chr7	43846967	43847167	+	1	NA	NA	NA	4798	NM_026806	68668	Mm.458122	NM_026806	ENSMUSG00000074155	Klk5	1110030O19Rik	kallikrein related-peptidase 5	protein-coding	0.025000	0.517413	
mm_76455.1	chr8	85260985	85261185	-	1	NA	NA	NA	30588	NM_146859	258858	Mm.354727	NM_146859	ENSMUSG00000051952	Olfr371	MOR141-3	olfactory receptor 371	protein-coding	0.005000	0.467662	-52(TCCTTTAAAAGA,-,0.00),-51(CCTTTAAAAGAA,+,0.00)
mm_109262.1	chr12	109540893	109541093	+	1	NA	NA	NA	-3	NR_027652	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.050000	0.562189	-27(CTTTATATAAAC,+,0.00)
mm_89515.1	chr10	94311819	94312019	+	1	NA	NA	NA	-13216	NR_033209	215472	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	0.080000	0.646766	
mm_127545.1	chr15	102136168	102136368	+	1	NA	NA	NA	-53	NM_001033277	223918	Mm.385009	NM_001033277	ENSMUSG00000036966	Spryd3	BC008150	SPRY domain containing 3	protein-coding	0.100000	0.671642	
mm_116848.1	chr13	54759113	54759313	-	1	NA	NA	NA	7227	NM_033610	104069	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	0.040000	0.567164	
mm_99494.1	chr11	102836342	102836542	+	1	NA	NA	NA	146	NM_080846	75689	Mm.44408	NM_080846	ENSMUSG00000020928	Higd1b	2310056K19Rik	HIG1 domain family, member 1B	protein-coding	0.035000	0.522388	
mm_172150.1	chr6	38376655	38376855	+	1	NA	NA	NA	-4769	NM_153600	264134	Mm.253446	NM_153600	ENSMUSG00000056832	Ttc26	9330141E21Rik|9430097H08Rik|hop|hpy	tetratricopeptide repeat domain 26	protein-coding	0.030000	0.537313	
mm_148923.1	chr19	6980530	6980730	+	1	NA	NA	NA	-169	NM_001166368	14227	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	13kDa|FKBP-2|mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0.050000	0.572139	
mm_357.1	chr1	33719824	33720024	+	1	NA	NA	NA	28	NM_008999	19335	Mm.86744	NM_008999	ENSMUSG00000004768	Rab23	AW545388|opb|opb2	RAB23, member RAS oncogene family	protein-coding	0.120000	0.671642	
mm_2767.1	chr1	130716970	130717170	+	1	NA	NA	NA	-257	NM_178691	226418	Mm.106553	NM_178691	ENSMUSG00000046404	Yod1	6330564D18Rik|9930028C20Rik|Hshin7	YOD1 deubiquitinase	protein-coding	0.075000	0.592040	
mm_23310.1	chr3	53053916	53054116	+	1	NA	NA	NA	12469	NM_175386	108927	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968	lipoma HMGIC fusion partner	protein-coding	0.015000	0.467662	
mm_92829.1	chr10	81482032	81482232	-	1	NA	NA	NA	577	NM_176954	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.045000	0.671642	
mm_100914.1	chr11	6271547	6271747	-	1	NA	NA	NA	3190	NM_134020	103694	Mm.254495	NM_134020	ENSMUSG00000004394	Tmed4	1110014L17Rik|AI326346	transmembrane p24 trafficking protein 4	protein-coding	0.020000	0.502488	
mm_109368.1	chr12	109646025	109646225	+	1	NA	NA	NA	3287	NR_046303	449561		NR_046303		AF357426	MBII-49	snoRNA AF357426	snoRNA	0.035000	0.417910	
mm_20051.1	chr2	120245102	120245302	-	1	NA	NA	NA	133	NM_177845	329502	Mm.330505	NM_177845	ENSMUSG00000050211	Pla2g4e	2310026J01Rik|C230096D22|Pla2epsilon	phospholipase A2, group IVE	protein-coding	0.080000	0.606965	
mm_101470.1	chr11	30649331	30649531	-	1	NA	NA	NA	-35	NM_029344	75572	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	0.075000	0.616915	
mm_44323.1	chr5	9725225	9725425	-	1	NA	NA	NA	27	NM_181850	108069	Mm.318966	NM_181850	ENSMUSG00000003974	Grm3	0710001G23Rik|Gprc1c|mGlu3|mGluR3	glutamate receptor, metabotropic 3	protein-coding	0.050000	0.601990	
mm_98207.1	chr11	87797365	87797565	+	1	NA	NA	NA	3681	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.060000	0.606965	
mm_2781.1	chr1	130834306	130834506	+	1	NA	NA	NA	7722	NM_011082	18703	Mm.276414	NM_011082	ENSMUSG00000026417	Pigr	-	polymeric immunoglobulin receptor	protein-coding	0.015000	0.462687	
mm_149503.1	chr19	11923852	11924052	+	1	NA	NA	NA	224	NR_105960	102465601		NR_105960	ENSMUSG00000104979	Mir6994	mmu-mir-6994	microRNA 6994	ncRNA	0.030000	0.572139	
mm_127291.1	chr15	100075013	100075213	+	1	NA	NA	NA	36449	NM_001159361	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.030000	0.577114	
mm_139407.1	chr17	52468703	52468903	+	1	NA	NA	NA	-133906	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.010000	0.422886	
mm_98182.1	chr11	87764617	87764817	+	1	NA	NA	NA	4176	NM_172449	207777	Mm.342019	NM_172449	ENSMUSG00000034156	Bzrap1	D230016K05|PRAX-1|Tspoap1|mKIAA0612	benzodiazepine receptor associated protein 1	protein-coding	0.105000	0.766169	
mm_680.1	chr1	40499917	40500117	+	1	NA	NA	NA	-15345	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.000000	0.407960	
mm_34953.1	chr4	155962459	155962659	+	1	NA	NA	NA	247	NM_026125	67389	Mm.29140	NM_026125	ENSMUSG00000023571	Fam132a	1110035L05Rik|C1qdc2|CTRP12|alipolin	family with sequence similarity 132, member A	protein-coding	0.075000	0.736318	
mm_157321.1	chrX	21745010	21745210	-	1	NA	NA	NA	30210	NM_020049	56774	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	0.000000	0.482587	-36(CAGTATATAAGG,-,0.00)
mm_32235.1	chr4	102254946	102255146	+	1	NA	NA	NA	107	NM_019840	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.010000	0.532338	
mm_62103.1	chr7	96213297	96213497	+	1	NA	NA	NA	1726	NM_001310760	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.070000	0.606965	
mm_29910.1	chr3	131474488	131474688	-	1	NA	NA	NA	-90180	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.020000	0.517413	
mm_167974.1	chrX	157414749	157414949	-	1	NA	NA	NA	437	NM_011077	18675	Mm.2529	NM_011077	ENSMUSG00000057457	Phex	Gy|HPDR|HPDR1|Hyp|PEX	phosphate regulating endopeptidase homolog, X-linked	protein-coding	0.020000	0.417910	
mm_40346.1	chr5	45523966	45524166	+	1	NA	NA	NA	3837	NM_025895	66999	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	0.000000	0.417910	
mm_114427.1	chr13	64510171	64510371	+	1	NA	NA	NA	-12479	NM_001195435	68880	Mm.390594	NM_001195435	ENSMUSG00000096537	1190003K10Rik	-	RIKEN cDNA 1190003K10 gene	protein-coding	0.040000	0.477612	
mm_138118.1	chr17	34143258	34143458	+	1	NA	NA	NA	-2058	NM_010388	15000	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0.015000	0.577114	
mm_85999.1	chr9	112229891	112230091	-	1	NA	NA	NA	2510	NM_001177616	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.000000	0.422886	
mm_93244.1	chr10	95416707	95416907	-	1	NA	NA	NA	50	NM_007706	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.130000	0.741294	
mm_70642.1	chr8	14090386	14090586	+	1	NA	NA	NA	-159	NM_001034862	234086	Mm.268896	NM_001034862	ENSMUSG00000051978	Erich1	-	glutamate rich 1	protein-coding	0.060000	0.611940	
mm_60835.1	chr7	45717985	45718185	+	1	NA	NA	NA	14	NM_009077	19899	Mm.3459	NM_009077	ENSMUSG00000059070	Rpl18	L18|Rpl18a	ribosomal protein L18	protein-coding	0.110000	0.661692	
mm_158801.1	chrX	167252460	167252660	-	1	NA	NA	NA	11769	NM_001313761	170744	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	0.005000	0.472637	
mm_152668.1	chr19	14597641	14597841	-	1	NA	NA	NA	442	NM_001302950	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.055000	0.462687	-81(GCCTTTTAAAAG,-,0.00),-80(CCTTTTAAAAGA,+,0.00),-80(CCTTTTAAAAGA,-,0.00),-79(CTTTTAAAAGAT,+,0.00)
mm_45986.1	chr5	90492630	90492830	-	1	NA	NA	NA	2016	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.020000	0.457711	
mm_39181.1	chr4	155784931	155785131	-	1	NA	NA	NA	843	NM_001033394	320587	Mm.384382	NM_001033394	ENSMUSG00000073680	Tmem88b	A230069A22Rik	transmembrane protein 88B	protein-coding	0.010000	0.616915	
mm_40563.1	chr5	61968440	61968640	+	1	NA	NA	NA	159697	NM_019468	14380	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	0.010000	0.422886	
mm_130259.1	chr15	96642668	96642868	-	1	NA	NA	NA	145	NM_001166458	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.105000	0.721393	
mm_102224.1	chr11	54909901	54910101	-	1	NA	NA	NA	7147	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.005000	0.502488	
mm_154384.1	chrM	11341	11541	+	1	NA	NA	NA	NA	NA									0.015000	0.348259	
mm_142493.1	chr17	46018162	46018362	-	1	NA	NA	NA	6901	NM_001110267	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.035000	0.552239	
mm_147770.1	chr18	61400306	61400506	-	1	NA	NA	NA	25	NM_133249	170826	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0.130000	0.736318	
mm_105524.1	chr11	106300376	106300576	-	1	NA	NA	NA	1420	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.060000	0.572139	
mm_73524.1	chr8	107544939	107545139	+	1	NA	NA	NA	-6205	NR_029553	387158		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0.040000	0.611940	
mm_70578.1	chr8	13167051	13167251	+	1	NA	NA	NA	7990	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.010000	0.432836	
mm_55546.1	chr6	71144248	71144448	-	1	NA	NA	NA	32	NM_001033929	232078	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	0.070000	0.671642	
mm_164294.1	chr15	103895876	103896076	-	1	NA	NA	NA	3324	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.005000	0.318408	
mm_51038.1	chr6	65596498	65596698	+	1	NA	NA	NA	6200	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.000000	0.328358	
mm_92271.1	chr10	71159625	71159825	-	1	NA	NA	NA	-35	NM_001347189	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	BicC family RNA binding protein 1	protein-coding	0.205000	0.865672	
mm_139617.1	chr17	57362337	57362537	+	1	NA	NA	NA	3751	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.353234	80(TACTTTATAAAC,-,0.00)
mm_95109.1	chr11	34071019	34071219	+	1	NA	NA	NA	23918	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.015000	0.552239	
mm_145318.1	chr18	54454364	54454564	+	1	NA	NA	NA	32169	NR_040338	77433	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.010000	0.358209	
mm_153241.1	chr19	36119156	36119356	-	1	NA	NA	NA	588	NM_013468	107765	Mm.10279	NM_013468	ENSMUSG00000024803	Ankrd1	Alrp|CARP|Crap|MARP1	ankyrin repeat domain 1 (cardiac muscle)	protein-coding	0.030000	0.547264	
mm_76080.1	chr8	79294845	79295045	-	1	NA	NA	NA	11	NM_133823	109136	Mm.26510	NM_133823	ENSMUSG00000037022	Mmaa	2810018E08Rik|AI840684	methylmalonic aciduria (cobalamin deficiency) type A	protein-coding	0.160000	0.771144	
mm_92748.1	chr10	81001254	81001454	-	1	NA	NA	NA	11	NM_001038655	14708	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.035000	0.572139	
mm_19160.1	chr2	83724251	83724451	-	1	NA	NA	NA	-46	NM_008402	16410	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.110000	0.761194	
mm_166372.1	chr5	125766340	125766540	-	1	NA	NA	NA	234022	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0.040000	0.497512	
mm_38077.1	chr4	134127911	134128111	-	1	NA	NA	NA	742	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.030000	0.562189	
mm_112387.1	chr12	119238124	119238324	-	1	NA	NA	NA	52	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.025000	0.547264	
mm_73114.1	chr8	94749750	94749950	+	1	NA	NA	NA	4166	NM_009137	20299	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	0.015000	0.507463	
mm_6157.1	chr1	65030232	65030432	-	1	NA	NA	NA	2427	NM_027582	70861	Mm.18725	NM_027582	ENSMUSG00000025955	Akr1cl	4921521F21Rik|AI451536|AI503553	aldo-keto reductase family 1, member C-like	protein-coding	0.005000	0.393035	
mm_45385.1	chr5	66142360	66142560	-	1	NA	NA	NA	8518	NM_001291226	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.005000	0.407960	
mm_114249.1	chr13	56633152	56633352	+	1	NA	NA	NA	23649	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.005000	0.497512	
mm_151459.1	chr19	58396097	58396297	+	1	NA	NA	NA	59201	NM_001285457	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.015000	0.512438	
mm_70587.1	chr8	13171237	13171437	+	1	NA	NA	NA	12176	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.005000	0.522388	
mm_161809.1	chr17	63877883	63878083	+	1	NA	NA	NA	-83	NM_001286415	14158	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.005000	0.437811	
mm_153481.1	chr19	41276803	41277003	-	1	NA	NA	NA	-12899	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.005000	0.477612	
mm_95465.1	chr11	50601937	50602137	+	1	NA	NA	NA	-48	NM_175643	216725	Mm.110597	NM_175643	ENSMUSG00000036545	Adamts2	ADAM-TS 2|ADAM-TS2|ADAMTS-2|PC I-NP|PCINP|pNPI	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2	protein-coding	0.125000	0.766169	
mm_54670.1	chr6	39207249	39207449	-	1	NA	NA	NA	-576	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.070000	0.611940	
mm_75337.1	chr8	43305823	43306023	-	1	NA	NA	NA	1086	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.045000	0.492537	
mm_137948.1	chr17	32877976	32878176	+	1	NA	NA	NA	13527	NM_207245	240066	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0.020000	0.527363	
mm_129716.1	chr15	81871800	81872000	-	1	NA	NA	NA	-8	NM_026737	68479	Mm.271715	NM_026737	ENSMUSG00000061360	Phf5a	1110007B08Rik	PHD finger protein 5A	protein-coding	0.060000	0.567164	
mm_57895.1	chr6	131375945	131376145	-	1	NA	NA	NA	12405	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.060000	0.606965	
mm_66966.1	chr7	62464463	62464663	-	1	NA	NA	NA	-53	NM_013788	27412	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	0.045000	0.497512	
mm_91885.1	chr10	59899531	59899731	-	1	NA	NA	NA	20040	NM_019965	56709	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.030000	0.646766	
mm_135456.1	chr16	45724510	45724710	-	1	NA	NA	NA	-79	NM_019754	56370	Mm.24183	NM_019754	ENSMUSG00000022658	Tagln3	2700038H05Rik|2900005O10Rik|AI426007|Np25	transgelin 3	protein-coding	0.045000	0.611940	
mm_32044.1	chr4	95967316	95967516	+	1	NA	NA	NA	37	NM_030014	77963	Mm.49994	NM_030014	ENSMUSG00000028572	Hook1	A930033L17Rik|azh	hook microtubule tethering protein 1	protein-coding	0.190000	0.781095	
mm_16949.1	chr2	17185385	17185585	-	1	NA	NA	NA	-171759	NR_040632	75069	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	0.005000	0.447761	-60(CACTTTAAAGAG,-,0.00)
mm_66244.1	chr7	35555369	35555569	-	1	NA	NA	NA	459	NM_033080	110959	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	0.135000	0.756219	
mm_67328.1	chr7	79732774	79732974	-	1	NA	NA	NA	-98	NM_001113471	103968	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	0.005000	0.567164	
mm_81783.1	chr9	114722213	114722413	+	1	NA	NA	NA	-8890	NM_026036	67213	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0.000000	0.293532	
mm_165869.1	chr4	38256435	38256635	+	1	NA	NA	NA	-1193758	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0.000000	0.313433	
mm_124011.1	chr14	76110689	76110889	-	1	NA	NA	NA	26	NM_026177	67467	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0.065000	0.547264	
mm_40950.1	chr5	76854956	76855156	+	1	NA	NA	NA	14457	NM_001163793	320827	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.055000	0.597015	
mm_67132.1	chr7	71719119	71719319	-	1	NA	NA	NA	-190476	NR_130995	78156	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	0.015000	0.447761	
mm_97691.1	chr11	80153987	80154187	+	1	NA	NA	NA	-75	NM_172133	216991	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.075000	0.671642	
mm_35098.1	chr4	8912776	8912976	-	1	NA	NA	NA	222470	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.015000	0.532338	
mm_108684.1	chr12	86832667	86832867	+	1	NA	NA	NA	52047	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.015000	0.492537	-12(GCTTTTCTAGCT,+,0.00)
mm_106857.1	chr12	8009123	8009323	+	1	NA	NA	NA	31546	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.432836	3(GAGTATAAAAGT,-,0.00)
mm_47849.1	chr5	134456644	134456844	-	1	NA	NA	NA	-28	NM_001081464	57080	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.130000	0.751244	
mm_144812.1	chr18	36287804	36288004	+	1	NA	NA	NA	6742	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.055000	0.552239	
mm_16363.1	chr2	174614088	174614288	+	1	NA	NA	NA	-29346	NM_001099328	100043757	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	ENSMUSG00000050600|OTTMUSG00000017459	zinc finger protein 831	protein-coding	0.025000	0.472637	-10(CCCTTTCTGGGC,+,0.00)
mm_61056.1	chr7	49910226	49910426	+	1	NA	NA	NA	27	NM_001146013	104245	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	0.030000	0.482587	
mm_62102.1	chr7	96211833	96212033	+	1	NA	NA	NA	262	NM_001310760	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.025000	0.527363	
mm_36683.1	chr4	96553410	96553610	-	1	NA	NA	NA	141	NM_010008	13110	Mm.98200	NM_010008	ENSMUSG00000052914	Cyp2j6	-	cytochrome P450, family 2, subfamily j, polypeptide 6	protein-coding	0.030000	0.582090	
mm_115288.1	chr13	111936992	111937192	+	1	NA	NA	NA	69156	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.015000	0.432836	-5(TTTTTTAAAGGC,+,0.00)
mm_95042.1	chr11	32277474	32277674	+	1	NA	NA	NA	974	NM_010405	15126	Mm.141758	NM_010405	ENSMUSG00000055609	Hba-x	AI450015|Hbz	hemoglobin X, alpha-like embryonic chain in Hba complex	protein-coding	0.040000	0.557214	
mm_54959.1	chr6	48708044	48708244	-	1	NA	NA	NA	100	NM_153175	231931	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	0.025000	0.407960	
mm_77116.1	chr8	111247189	111247389	-	1	NA	NA	NA	11913	NM_009149	20340	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0.000000	0.318408	-7(TTTTTTAAAGAG,+,0.00)
mm_65511.1	chr7	25754628	25754828	-	1	NA	NA	NA	-8	NM_144922	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.080000	0.696517	
mm_60500.1	chr7	44478859	44479059	+	1	NA	NA	NA	-5558	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.417910	
mm_14967.1	chr2	152081781	152081981	+	1	NA	NA	NA	352	NM_001160410	545474	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.180000	0.781095	-97(TCCCATATAAAG,-,0.00),-95(CCATATAAAGCC,+,0.00)
mm_127149.1	chr15	98567208	98567408	+	1	NA	NA	NA	-16	NR_028442	100048895	Mm.471074	NR_028442		9330020H09Rik	ENSMUSG00000075426	RIKEN cDNA 9330020H09 gene	ncRNA	0.090000	0.646766	
mm_130493.1	chr15	98807799	98807999	-	1	NA	NA	NA	26	NM_001013741	13199	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.085000	0.711443	-34(GGGTATATATAG,-,0.00)
mm_16829.1	chr2	11492001	11492201	-	1	NA	NA	NA	9989	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.010000	0.487562	
mm_158091.1	chrX	101419682	101419882	-	1	NA	NA	NA	132	NM_001177986	56364	Mm.23458	NM_019831	ENSMUSG00000031310	Zmym3	9030216B10Rik|AW122925|DXS6673El|Zfp261	zinc finger, MYM-type 3	protein-coding	0.075000	0.656716	-33(CCATTTAAAGGG,+,0.00),-33(CCATTTAAAGGG,-,0.00)
mm_103905.1	chr11	83578372	83578572	-	1	NA	NA	NA	164	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.005000	0.512438	
mm_26590.1	chr3	151386297	151386497	+	1	NA	NA	NA	-51485	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.000000	0.507463	
mm_69640.1	chr7	138846148	138846348	-	1	NA	NA	NA	19	NM_001045483	69546	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0.110000	0.671642	
mm_149166.1	chr19	9023415	9023615	+	1	NA	NA	NA	5611	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.010000	0.407960	
mm_10683.1	chr2	22588937	22589137	+	1	NA	NA	NA	-33290	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.025000	0.437811	
mm_62950.1	chr7	119596018	119596218	+	1	NA	NA	NA	-21710	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.015000	0.398010	
mm_19908.1	chr2	114175233	114175433	-	1	NA	NA	NA	6	NM_009702	11834	Mm.2545	NM_009702	ENSMUSG00000040383	Aqr	AW495846|mKIAA0560	aquarius	protein-coding	0.060000	0.606965	
mm_40969.1	chr5	77001356	77001556	+	1	NA	NA	NA	-2599	NM_206935	384185	Mm.451858	NM_206935	ENSMUSG00000063820	Arl9	1700110A09Rik	ADP-ribosylation factor-like 9	protein-coding	0.065000	0.661692	
mm_49561.1	chr6	30568275	30568475	+	1	NA	NA	NA	6	NM_027926	71791	Mm.105759	NM_027926	ENSMUSG00000039070	Cpa4	1110019K20Rik|AV009555	carboxypeptidase A4	protein-coding	0.020000	0.482587	-32(CCTTATAAATAC,+,0.00)
mm_33470.1	chr4	130816792	130816992	+	1	NA	NA	NA	24355	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.040000	0.582090	
mm_169176.1	chr13	65703712	65703912	-	1	NA	NA	NA	-409641	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.025000	0.532338	
mm_61840.1	chr7	88290356	88290556	+	1	NA	NA	NA	12371	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.015000	0.373134	
mm_146987.1	chr18	34006855	34007055	-	1	NA	NA	NA	251	NM_013512	13824	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	0.080000	0.686567	
mm_157862.1	chrX	75126867	75127067	-	1	NA	NA	NA	4049	NM_008621	17524	Mm.391267	NM_008621	ENSMUSG00000031402	Mpp1	55kDa|C130070C03Rik|p55	membrane protein, palmitoylated	protein-coding	0.000000	0.373134	
mm_58666.1	chr7	6976991	6977191	+	1	NA	NA	NA	-429	NR_036631	116811	Mm.381671	NR_036631	ENSMUSG00000108043	Zim3	1700128I23Rik	zinc finger, imprinted 3	ncRNA	0.050000	0.532338	
mm_97608.1	chr11	78949984	78950184	+	1	NA	NA	NA	24793	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.030000	0.611940	
mm_147360.1	chr18	43393044	43393244	-	1	NA	NA	NA	233	NM_009468	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.100000	0.721393	
mm_124565.1	chr14	123627065	123627265	-	1	NA	NA	NA	-21	NM_177393	338370	Mm.255348	NM_177393	ENSMUSG00000000197	Nalcn	A530023G15Rik|AI849508|Vgcnl1	sodium leak channel, non-selective	protein-coding	0.030000	0.582090	
mm_164686.1	chr17	47581043	47581243	+	1	NA	NA	NA	-12324	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.020000	0.492537	84(CACTTTAAAGAG,-,0.00)
mm_140509.1	chr17	5492407	5492607	-	1	NA	NA	NA	-93	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.120000	0.771144	
mm_17708.1	chr2	32385405	32385605	-	1	NA	NA	NA	2234	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.020000	0.527363	
mm_88420.1	chr10	77197456	77197656	+	1	NA	NA	NA	-31026	NM_009929	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.000000	0.562189	-33(GGCTTTAAATGC,-,0.00)
mm_92683.1	chr10	80622424	80622624	-	1	NA	NA	NA	-256	NM_134002	103236	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.085000	0.562189	
mm_87460.1	chr10	51484687	51484887	+	1	NA	NA	NA	4175	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.000000	0.452736	
mm_121104.1	chr14	100285085	100285285	+	1	NA	NA	NA	-135389	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.055000	0.696517	
mm_89197.1	chr10	86347984	86348184	+	1	NA	NA	NA	47672	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.015000	0.482587	
mm_11723.1	chr2	36253227	36253427	+	1	NA	NA	NA	22901	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.005000	0.407960	
mm_72735.1	chr8	85084300	85084500	+	1	NA	NA	NA	1131	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.025000	0.547264	
mm_171731.1	chr4	93265479	93265679	-	1	NA	NA	NA	69932	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.020000	0.462687	
mm_163210.1	chr11	99730020	99730220	+	1	NA	NA	NA	42793	NM_001126322	100040276	Mm.475095	NM_001126322	ENSMUSG00000078668	Gm11595	OTTMUSG00000002543	predicted gene 11595	protein-coding	0.000000	0.497512	-34(GGGTATAAAAGC,-,0.00)
mm_14547.1	chr2	132847612	132847812	+	1	NA	NA	NA	-22	NM_025646	66586	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	0.010000	0.512438	81(GCTTTAAAACTC,+,0.00)
mm_99948.1	chr11	111075362	111075562	+	1	NA	NA	NA	9298	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.010000	0.323383	5(GCTTAAAAAGAA,+,0.00)
mm_124400.1	chr14	114945844	114946044	-	1	NA	NA	NA	4	NR_126551	74982		NR_126548		1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	0.025000	0.532338	
mm_113710.1	chr13	43505958	43506158	+	1	NA	NA	NA	-25085	NM_019930	56705	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.005000	0.497512	
mm_90851.1	chr10	8762498	8762698	-	1	NA	NA	NA	123472	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.045000	0.472637	
mm_154915.1	chrX	21714944	21715144	+	1	NA	NA	NA	144	NM_020049	56774	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	0.025000	0.592040	-35(CTCCATAAATGG,-,0.00),-33(CCATAAATGGTC,+,0.00)
mm_157215.1	chrX	12994458	12994658	-	1	NA	NA	NA	-47457	NR_038158	70489	Mm.383563	NR_038158	ENSMUSG00000087424	5730405O15Rik	-	RIKEN cDNA 5730405O15 gene	ncRNA	0.040000	0.487562	
mm_43797.1	chr5	142817785	142817985	+	1	NA	NA	NA	-498	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.070000	0.601990	
mm_130696.1	chr15	100682920	100683120	-	1	NA	NA	NA	4900	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.020000	0.542289	
mm_116982.1	chr13	56295801	56296001	-	1	NA	NA	NA	650	NM_019568	57266	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding	0.080000	0.601990	
mm_13045.1	chr2	91096666	91096866	+	1	NA	NA	NA	88	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.035000	0.611940	
mm_160128.1	chr7	28693044	28693244	+	1	NA	NA	NA	0	NM_001163702	233040	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	0.050000	0.631841	
mm_158411.1	chrX	136976771	136976971	-	1	NA	NA	NA	3	NM_001081983	666244	Mm.381904	NM_001081983	ENSMUSG00000089768	Tmsb15b1	Tm15b	thymosin beta 15b1	protein-coding	0.030000	0.547264	
mm_63046.1	chr7	121734383	121734583	+	1	NA	NA	NA	4	NM_011326	20278	Mm.35247	NM_011326	ENSMUSG00000000216	Scnn1g	SCNEG	sodium channel, nonvoltage-gated 1 gamma	protein-coding	0.055000	0.606965	-14(GGCTTTATGAGG,-,0.00)
mm_3139.1	chr1	135133196	135133396	+	1	NA	NA	NA	571	NM_177081	320139	Mm.258388	NM_177081	ENSMUSG00000031506	Ptpn7	BPTP-4|C920001D21Rik|HEPTP|LC-PTP|LPTP	protein tyrosine phosphatase, non-receptor type 7	protein-coding	0.025000	0.577114	
mm_149795.1	chr19	23165134	23165334	+	1	NA	NA	NA	15803	NR_035423	100316672		NR_035423	ENSMUSG00000080626	Mir1192	Mirn1192|mmu-mir-1192	microRNA 1192	ncRNA	0.015000	0.527363	
mm_39339.1	chr5	8833359	8833559	+	1	NA	NA	NA	35312	NM_011075	18669	Mm.146649	NM_011075	ENSMUSG00000028970	Abcb1b	Abcb1|Mdr1|Mdr1b|Pgy-1|Pgy1|mdr	ATP-binding cassette, sub-family B (MDR/TAP), member 1B	protein-coding	0.020000	0.547264	
mm_111344.1	chr12	86884752	86884952	-	1	NA	NA	NA	-38	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.110000	0.701493	
mm_113053.1	chr13	23685702	23685902	+	1	NA	NA	NA	1603	NM_023422	68024	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	0.005000	0.383085	-33(GTGTATAAAAGG,-,0.00)
mm_47333.1	chr5	122501119	122501319	-	1	NA	NA	NA	1006	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.050000	0.557214	
mm_146914.1	chr18	31447295	31447495	-	1	NA	NA	NA	20	NM_009308	20983	Mm.233846	NM_009308	ENSMUSG00000024261	Syt4	SytIV	synaptotagmin IV	protein-coding	0.040000	0.592040	
mm_136520.1	chr16	97458886	97459086	-	1	NA	NA	NA	3919	NM_010846	17857	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.005000	0.348259	
mm_118267.1	chr13	112578232	112578432	-	1	NA	NA	NA	2330	NM_139299	218624	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	0.040000	0.512438	
mm_170091.1	chr17	36042606	36042806	-	1	NA	NA	NA	-4	NM_010397	15039	Mm.195061	NM_010396	ENSMUSG00000056116	H2-T22	27b|H-2T17|H-2T22|H2-T17|T22b	histocompatibility 2, T region locus 22	protein-coding	0.030000	0.532338	
mm_32682.1	chr4	115800142	115800342	+	1	NA	NA	NA	15428	NM_181040	230649	Mm.109600	NM_181040	ENSMUSG00000028710	Atpaf1	6330547J17Rik|AI593252|ATP11|ATP11p	ATP synthase mitochondrial F1 complex assembly factor 1	protein-coding	0.010000	0.502488	
mm_7213.1	chr1	93101767	93101967	-	1	NA	NA	NA	7	NM_001294149	16560	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.090000	0.701493	
mm_27526.1	chr3	57340869	57341069	-	1	NA	NA	NA	-39050	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	0.000000	0.313433	
mm_70892.1	chr8	25597012	25597212	+	1	NA	NA	NA	375	NM_173012	270035	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	0.080000	0.651741	
mm_61049.1	chr7	49909971	49910171	+	1	NA	NA	NA	-228	NM_001146013	104245	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	0.050000	0.557214	
mm_94750.1	chr11	21115235	21115435	+	1	NA	NA	NA	24011	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.005000	0.283582	-89(TACTATATAAGA,-,0.00)
mm_45457.1	chr5	67777256	67777456	-	1	NA	NA	NA	70075	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.005000	0.318408	
mm_101015.1	chr11	8558305	8558505	-	1	NA	NA	NA	106130	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.020000	0.587065	
mm_143722.1	chr17	81375793	81375993	-	1	NA	NA	NA	-310808	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.005000	0.353234	
mm_46133.1	chr5	92675141	92675341	-	1	NA	NA	NA	-114	NM_177230	320696	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	0.110000	0.701493	
mm_124206.1	chr14	99045977	99046177	-	1	NA	NA	NA	59	NM_175245	76789	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0.150000	0.771144	
mm_124352.1	chr14	104521704	104521904	-	1	NA	NA	NA	862	NM_026047	72486	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	0.035000	0.318408	
mm_32170.1	chr4	100478699	100478899	+	1	NA	NA	NA	-68	NM_001033773	381534	Mm.318133	NM_001033773	ENSMUSG00000069733	Ube2u	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding	0.025000	0.497512	
mm_127094.1	chr15	97787533	97787733	+	1	NA	NA	NA	3268	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.015000	0.592040	
mm_65719.1	chr7	28378999	28379199	-	1	NA	NA	NA	129	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.065000	0.606965	
mm_168198.1	chr10	65534538	65534738	+	1	NA	NA	NA	589426	NR_038039	69433	Mm.23366	NR_038039	ENSMUSG00000100000	1700023F02Rik	AV205046	RIKEN cDNA 1700023F02 gene	ncRNA	0.040000	0.462687	
mm_162048.1	chrX	6047338	6047538	+	1	NA	NA	NA	-69	NM_021431	58242	Mm.41198	NM_021431	ENSMUSG00000073295	Nudt11	DIPP3|DIPP3b	nudix (nucleoside diphosphate linked moiety X)-type motif 11	protein-coding	0.225000	0.840796	
mm_80330.1	chr9	75037702	75037902	+	1	NA	NA	NA	70	NM_021548	59046	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	0.135000	0.756219	
mm_55448.1	chr6	67271152	67271352	-	1	NA	NA	NA	4273	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.020000	0.388060	
mm_114699.1	chr13	83504144	83504344	+	1	NA	NA	NA	210	NM_001347564	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.035000	0.522388	
mm_77958.1	chr9	7628102	7628302	+	1	NA	NA	NA	-29	NM_013903	30800	Mm.390121	NM_013903	ENSMUSG00000018620	Mmp20	-	matrix metallopeptidase 20 (enamelysin)	protein-coding	0.000000	0.482587	-32(CTCTATAAAAGG,-,0.00)
mm_163576.1	chr13	32214050	32214250	-	1	NA	NA	NA	124394	NM_146041	218138	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	0.000000	0.398010	
mm_149147.1	chr19	9005865	9006065	+	1	NA	NA	NA	-11939	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.005000	0.427861	
mm_76806.1	chr8	104340314	104340514	-	1	NA	NA	NA	-180	NM_024217	68119	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.010000	0.547264	
mm_133182.1	chr16	72639509	72639709	+	1	NA	NA	NA	-23540	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.025000	0.368159	
mm_41877.1	chr5	105125427	105125627	+	1	NA	NA	NA	14025	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.010000	0.507463	
mm_26178.1	chr3	138290474	138290674	+	1	NA	NA	NA	12929	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.015000	0.432836	-94(ACTTTTATGGTG,+,0.00),74(CTCTTTAGAGAC,+,0.00)
mm_136386.1	chr16	93127699	93127899	-	1	NA	NA	NA	225390	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.005000	0.378109	
mm_115422.1	chr13	117220220	117220420	+	1	NA	NA	NA	-253	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.030000	0.472637	
mm_30358.1	chr3	151764118	151764318	-	1	NA	NA	NA	-1327	NM_031367	15061	Mm.219544	NM_031367	ENSMUSG00000039146	Ifi44l	H-28|H28|H28-1|NS1178	interferon-induced protein 44 like	protein-coding	0.000000	0.373134	
mm_61477.1	chr7	75643124	75643324	+	1	NA	NA	NA	187690	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.025000	0.398010	
mm_74578.1	chr8	11221285	11221485	-	1	NA	NA	NA	-91420	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.020000	0.577114	
mm_109828.1	chr12	3907745	3907945	-	1	NA	NA	NA	16101	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.020000	0.407960	
mm_147297.1	chr18	39519097	39519297	-	1	NA	NA	NA	-31952	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.015000	0.512438	
mm_118389.1	chr13	118387089	118387289	-	1	NA	NA	NA	63	NM_021556	59054	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	0.125000	0.676617	
mm_112569.1	chr13	13574040	13574240	+	1	NA	NA	NA	-16269	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.005000	0.472637	
mm_26609.1	chr3	152234697	152234897	+	1	NA	NA	NA	24339	NM_057172	51886	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	0.000000	0.338308	
mm_73579.1	chr8	109781414	109781614	+	1	NA	NA	NA	2931	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0.000000	0.333333	
mm_135659.1	chr16	52403210	52403410	-	1	NA	NA	NA	49771	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.338308	60(AGCTTTAAAAGA,-,0.00),61(GCTTTAAAAGAT,+,0.00)
mm_130768.1	chr15	101406579	101406779	-	1	NA	NA	NA	-5724	NM_033073	110310	Mm.486285	NM_033073	ENSMUSG00000023039	Krt7	D15Wsu77e|K7|Krt2-7	keratin 7	protein-coding	0.005000	0.437811	
mm_52502.1	chr6	115244086	115244286	+	1	NA	NA	NA	5192	NM_001326560	20965	Mm.441431	NM_013681	ENSMUSG00000009394	Syn2	2900074L19Rik|AI836018|AI841723	synapsin II	protein-coding	0.005000	0.462687	
mm_86857.1	chr10	21882227	21882427	+	1	NA	NA	NA	143	NM_001161845	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.080000	0.636816	
mm_112123.1	chr12	112868150	112868350	-	1	NA	NA	NA	-7334	NM_019925	56696	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.005000	0.542289	
mm_152183.1	chr19	7427049	7427249	-	1	NA	NA	NA	4576	NR_105957	102466781		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	0.015000	0.597015	
mm_7949.1	chr1	133915141	133915341	-	1	NA	NA	NA	6160	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.045000	0.611940	
mm_160460.1	chr8	109614631	109614831	+	1	NA	NA	NA	214	NM_181544	244646	Mm.436810	NM_181544	ENSMUSG00000048827	Pkd1l3	-	polycystic kidney disease 1 like 3	protein-coding	0.035000	0.527363	
mm_25673.1	chr3	121989170	121989370	+	1	NA	NA	NA	35944	NM_172525	214137	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.005000	0.373134	
mm_118937.1	chr14	27229783	27229983	+	1	NA	NA	NA	-8127	NM_027871	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.015000	0.547264	
mm_3825.1	chr1	159310235	159310435	+	1	NA	NA	NA	16562	NR_144489	100846986		NR_144489		Pou5f1-rs1	Gm21053|Oct4P2|Otf-3rs|Otf3-rs1|Otf3a	POU domain, class 5, transcription factor 1, related sequence 1	pseudo	0.010000	0.243781	
mm_87948.1	chr10	63023243	63023443	+	1	NA	NA	NA	506	NM_001079824	432467	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	0.100000	0.731343	
mm_66607.1	chr7	45465156	45465356	-	1	NA	NA	NA	1642	NM_007527	12028	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.045000	0.597015	
mm_34801.1	chr4	154833896	154834096	+	1	NA	NA	NA	-22204	NM_172878	242800	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	0.010000	0.601990	
mm_155182.1	chrX	53772709	53772909	+	1	NA	NA	NA	3585	NM_001009549	333473	Mm.327378	NM_001009549	ENSMUSG00000059334	Zfp36l3	AY661338	zinc finger protein 36, C3H type-like 3	protein-coding	0.020000	0.373134	
mm_39313.1	chr5	8056444	8056644	+	1	NA	NA	NA	2	NM_001080974	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.145000	0.791045	
mm_34697.1	chr4	152039263	152039463	+	1	NA	NA	NA	42	NM_028727	74035	Mm.275803	NM_028727	ENSMUSG00000028948	Nol9	4632412I24Rik|6030462G04Rik|AI449622|AW490720	nucleolar protein 9	protein-coding	0.135000	0.751244	
mm_6870.1	chr1	84282786	84282986	-	1	NA	NA	NA	1759	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.020000	0.477612	
mm_132951.1	chr16	49912773	49912973	+	1	NA	NA	NA	57219	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.010000	0.298507	
mm_68634.1	chr7	118243287	118243487	-	1	NA	NA	NA	250	NM_001031814	233789	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	0.145000	0.746269	
mm_980.1	chr1	58406712	58406912	+	1	NA	NA	NA	13676	NM_025824	66882	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.025000	0.378109	50(CCCTTTATACAC,+,0.00)
mm_1703.1	chr1	75168659	75168859	+	1	NA	NA	NA	24	NM_026846	68818	Mm.32646	NM_026846	ENSMUSG00000026197	Zfand2b	1110060O18Rik|C81256	zinc finger, AN1 type domain 2B	protein-coding	0.100000	0.726368	
mm_121259.1	chr14	103070128	103070328	+	1	NA	NA	NA	12	NM_001033242	211286	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0.140000	0.756219	
mm_23006.1	chr3	34104389	34104589	+	1	NA	NA	NA	-23135	NM_026332	67713	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.030000	0.482587	
mm_128183.1	chr15	34678679	34678879	-	1	NA	NA	NA	-73	NM_145469	223473	Mm.258402	NM_145469	ENSMUSG00000038879	Nipal2	9330161F08Rik|Npal2	NIPA-like domain containing 2	protein-coding	0.125000	0.756219	
mm_145571.1	chr18	60911864	60912064	+	1	NA	NA	NA	-276	NM_001038499	545260	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	0.050000	0.616915	
mm_163070.1	chr11	67254638	67254838	+	1	NA	NA	NA	16926	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.035000	0.547264	
mm_154940.1	chrX	36112043	36112243	+	1	NA	NA	NA	35	NM_133990	16164	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	0.120000	0.746269	
mm_64437.1	chr7	142653459	142653659	+	1	NA	NA	NA	1437	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.005000	0.348259	-51(TGTTTTTAAAGG,-,0.00),-50(GTTTTTAAAGGG,+,0.00),-50(GTTTTTAAAGGG,-,0.00),-32(GTTTTTAAAGTT,+,0.00)
mm_27842.1	chr3	79156069	79156269	-	1	NA	NA	NA	-10294	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.020000	0.437811	-11(CACTCTAAAGGC,-,0.00)
mm_109285.1	chr12	109553804	109554004	+	1	NA	NA	NA	8506	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.000000	0.507463	
mm_29999.1	chr3	135590527	135590727	-	1	NA	NA	NA	100920	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.010000	0.547264	
mm_124713.1	chr15	6574699	6574899	+	1	NA	NA	NA	-5048	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.010000	0.517413	
mm_142372.1	chr17	44658446	44658646	-	1	NA	NA	NA	77630	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.025000	0.532338	
mm_71015.1	chr8	31187305	31187505	+	1	NA	NA	NA	74	NM_001286425	171167	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	0.050000	0.582090	
mm_132289.1	chr16	33185062	33185262	+	1	NA	NA	NA	91	NM_176840	106326	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.085000	0.711443	
mm_144485.1	chr18	24088890	24089090	+	1	NA	NA	NA	32829	NM_172625	225280	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0.000000	0.383085	
mm_92705.1	chr10	80742151	80742351	-	1	NA	NA	NA	-40	NM_007460	11776	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.045000	0.636816	
mm_24877.1	chr3	95989260	95989460	+	1	NA	NA	NA	3850	NR_045872	668224	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0.025000	0.606965	
mm_154325.1	chrM	2297	2497	+	1	NA	NA	NA	NA	NA									0.035000	0.373134	-9(TCCTATTTAAGA,-,0.00),66(AGCTATTAATGG,-,0.00)
mm_34503.1	chr4	148664253	148664453	+	1	NA	NA	NA	21036	NM_001085505	230909	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	0.005000	0.557214	
mm_54773.1	chr6	41532772	41532972	-	1	NA	NA	NA	11096	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.462687	-34(TGTCATATAAGG,-,0.00)
mm_55139.1	chr6	51320857	51321057	-	1	NA	NA	NA	-51047	NR_029719	387166		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.005000	0.467662	
mm_136704.1	chr17	7875285	7875485	+	1	NA	NA	NA	-50615	NM_145968	72536	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik	T cell activation Rho GTPase activating protein	protein-coding	0.035000	0.467662	
mm_79564.1	chr9	58129380	58129580	+	1	NA	NA	NA	131	NM_009291	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.015000	0.577114	-32(GGTTCTTAAAGC,-,0.00)
mm_131240.1	chr16	10489643	10489843	+	1	NA	NA	NA	-38	NM_001243761	12265	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.020000	0.577114	
mm_170484.1	chr19	14960427	14960627	-	1	NA	NA	NA	-362344	NM_001302947	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.010000	0.462687	
mm_64073.1	chr7	140906974	140907174	+	1	NA	NA	NA	1010	NR_015583	212965	Mm.387212	NR_015583	ENSMUSG00000109628	BC024386	BC039766	cDNA sequence BC023486	ncRNA	0.025000	0.467662	85(GTTTTTAAAGAC,+,0.00)
mm_11600.1	chr2	33641232	33641432	+	1	NA	NA	NA	139	NR_046275	100504399	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	0.045000	0.572139	
mm_102751.1	chr11	67257139	67257339	-	1	NA	NA	NA	19427	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.025000	0.572139	
mm_115860.1	chr13	21402618	21402818	-	1	NA	NA	NA	37	NM_001145778	72739	Mm.296071	NM_023685	ENSMUSG00000021327	Zkscan3	2810435N07Rik|AA408594|AI132359|Skz1|Zf47|Zfp-47|Zfp306|Zfp307|mszf35	zinc finger with KRAB and SCAN domains 3	protein-coding	0.075000	0.636816	
mm_143328.1	chr17	66449337	66449537	-	1	NA	NA	NA	313	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.140000	0.781095	
mm_110000.1	chr12	15816081	15816281	-	1	NA	NA	NA	604	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.025000	0.452736	
mm_44596.1	chr5	25059348	25059548	-	1	NA	NA	NA	41194	NM_145401	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.030000	0.597015	
mm_2452.1	chr1	101155696	101155896	+	1	NA	NA	NA	28	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0.000000	0.462687	
mm_91992.1	chr10	62071722	62071922	-	1	NA	NA	NA	39191	NM_027251	69894	Mm.294126	NM_027251	ENSMUSG00000020083	2010107G23Rik	AA545165	RIKEN cDNA 2010107G23 gene	protein-coding	0.030000	0.522388	
mm_22608.1	chr3	14507832	14508032	+	1	NA	NA	NA	-25856	NM_001163579	71710	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	0.000000	0.328358	
mm_165342.1	chr2	118011800	118012000	-	1	NA	NA	NA	99302	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA	0.020000	0.492537	
mm_66938.1	chr7	61615236	61615436	-	1	NA	NA	NA	-9	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.000000	0.368159	
mm_38854.1	chr4	149399289	149399489	-	1	NA	NA	NA	27242	NM_022022	63958	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0.010000	0.522388	
mm_164968.1	chr19	6980498	6980698	+	1	NA	NA	NA	-137	NM_001166368	14227	Mm.4234	NM_008020	ENSMUSG00000056629	Fkbp2	13kDa|FKBP-2|mFKBP13|mFKBP2	FK506 binding protein 2	protein-coding	0.045000	0.562189	
mm_159045.1	chr1	182441967	182442167	+	1	NA	NA	NA	32900	NM_173378	209456	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.005000	0.412935	
mm_118278.1	chr13	112652225	112652425	-	1	NA	NA	NA	-15	NM_001145885	13206	Mm.12818	NM_010029	ENSMUSG00000021758	Ddx4	AV206478|Mvh|VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding	0.130000	0.736318	
mm_12751.1	chr2	79253282	79253482	+	1	NA	NA	NA	-2044	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.000000	0.497512	
mm_120128.1	chr14	60177547	60177747	+	1	NA	NA	NA	51268	NR_030458	751526		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA	0.160000	0.815920	
mm_145720.1	chr18	63708610	63708810	+	1	NA	NA	NA	15	NM_001014981	104082	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0.085000	0.651741	
mm_83585.1	chr9	48340753	48340953	-	1	NA	NA	NA	45	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.015000	0.532338	36(CTCTCTAAAAGC,-,0.00)
mm_129537.1	chr15	79334257	79334457	-	1	NA	NA	NA	-5986	NM_001199023	53357	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0.030000	0.552239	5(TCCTCTAAAAGC,-,0.00)
mm_15762.1	chr2	164289515	164289715	+	1	NA	NA	NA	347	NM_021363	64335	Mm.389393	NM_021363	ENSMUSG00000017003	Svs3a	9530026M05Rik|BB121242|Semg2|Svp-3|Svp3|Svs3	seminal vesicle secretory protein 3A	protein-coding	0.000000	0.422886	
mm_118915.1	chr14	26693172	26693372	+	1	NA	NA	NA	-23426	NM_178668	211948	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	0.015000	0.407960	
mm_6560.1	chr1	75141537	75141737	-	1	NA	NA	NA	731	NM_026977	69171	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0.115000	0.716418	
mm_139134.1	chr17	47509099	47509299	+	1	NA	NA	NA	4148	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.015000	0.472637	
mm_79685.1	chr9	59942099	59942299	+	1	NA	NA	NA	7880	NM_013708	23958	Mm.103641	NM_013708	ENSMUSG00000032292	Nr2e3	A930035N01Rik|PNR|RNR|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding	0.010000	0.502488	
mm_47839.1	chr5	134314365	134314565	-	1	NA	NA	NA	295	NM_001080746	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.115000	0.756219	
mm_136216.1	chr16	89960635	89960835	-	1	NA	NA	NA	92	NM_009384	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.050000	0.532338	
mm_155022.1	chrX	42066435	42066635	+	1	NA	NA	NA	-1301	NM_009688	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.010000	0.482587	
mm_21533.1	chr2	163645742	163645942	-	1	NA	NA	NA	-699	NM_012032	26943	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	0.025000	0.452736	
mm_159802.1	chr5	113490569	113490769	+	1	NA	NA	NA	-59751	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.125000	0.761194	
mm_144125.1	chr18	4908854	4909054	+	1	NA	NA	NA	96468	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA	0.000000	0.487562	
mm_26095.1	chr3	136902948	136903148	+	1	NA	NA	NA	232982	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.070000	0.532338	
mm_18774.1	chr2	73529342	73529542	-	1	NA	NA	NA	45	NM_153138	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.140000	0.741294	
mm_35215.1	chr4	19650074	19650274	-	1	NA	NA	NA	58830	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.015000	0.452736	-67(CCTCATAGACCC,+,0.00)
mm_116833.1	chr13	54687124	54687324	-	1	NA	NA	NA	584	NM_001146025	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.065000	0.621891	19(GGCTCTTAAAGT,-,0.00),20(GCTCTTAAAGTC,+,0.00)
mm_13536.1	chr2	110601248	110601448	+	1	NA	NA	NA	4049	NM_001177624	241612	Mm.277148	NM_001003915	ENSMUSG00000041644	Slc5a12	AI315119|D630015G19|SMCT2	solute carrier family 5 (sodium/glucose cotransporter), member 12	protein-coding	0.000000	0.388060	
mm_170067.1	chr17	31658613	31658813	-	1	NA	NA	NA	41	NM_024187	108121	Mm.379289	NM_024187	ENSMUSG00000061613	U2af1	2010107D16Rik|35kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1	protein-coding	0.125000	0.651741	
mm_47268.1	chr5	121848751	121848951	-	1	NA	NA	NA	-177	NM_175474	231717	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.085000	0.616915	-30(CCCTCTTAAAGG,-,0.00),-29(CCTCTTAAAGGG,+,0.00)
mm_171584.1	chr4	147553200	147553400	+	1	NA	NA	NA	23	NM_001014397	433804	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154|OTTMUSG00000010673	zinc finger protein 985	protein-coding	0.020000	0.532338	
mm_1210.1	chr1	62726595	62726795	+	1	NA	NA	NA	23378	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.015000	0.497512	24(ATGTCTTAAAGG,-,0.00)
mm_122472.1	chr14	45595057	45595257	-	1	NA	NA	NA	51447	NR_045809	67651	Mm.55930	NR_045809		4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	0.020000	0.492537	
mm_172707.1	chr8	65711367	65711567	-	1	NA	NA	NA	92942	NM_175188	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.055000	0.651741	
mm_83825.1	chr9	53975061	53975261	-	1	NA	NA	NA	140	NM_177769	270162	Mm.259791	NM_177769	ENSMUSG00000041986	Elmod1	4831417L10|AI428506|AI834991	ELMO/CED-12 domain containing 1	protein-coding	0.125000	0.731343	
mm_24350.1	chr3	89912795	89912995	+	1	NA	NA	NA	301	NM_001310676	16194	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.120000	0.686567	
mm_80359.1	chr9	75217377	75217577	+	1	NA	NA	NA	-14537	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.015000	0.487562	
mm_104050.1	chr11	86358089	86358289	-	1	NA	NA	NA	-664	NM_001080931	327987	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0.075000	0.616915	-98(CGCCATTAAAGC,-,0.00)
mm_94768.1	chr11	21239025	21239225	+	1	NA	NA	NA	93	NM_001290628	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.145000	0.820896	
mm_2886.1	chr1	131847471	131847671	+	1	NA	NA	NA	19559	NM_173865	98396	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	0.040000	0.557214	
mm_121516.1	chr14	122030465	122030665	+	1	NA	NA	NA	-4109	NM_001037744	223262	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.000000	0.517413	
mm_50953.1	chr6	58831421	58831621	+	1	NA	NA	NA	-2179	NM_028705	73998	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0.130000	0.741294	
mm_88213.1	chr10	70204580	70204780	+	1	NA	NA	NA	16	NM_001304739	69563	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Mln	myoregulin	protein-coding	0.025000	0.507463	
mm_96307.1	chr11	63158437	63158637	+	1	NA	NA	NA	25734	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.025000	0.432836	
mm_112588.1	chr13	13784222	13784422	+	1	NA	NA	NA	15	NM_010317	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0.115000	0.751244	
mm_85305.1	chr9	100570989	100571189	-	1	NA	NA	NA	-4	NM_001101483	245020	Mm.236289	NM_001101483	ENSMUSG00000070287	Slc35g2	Gm519|Tmem22	solute carrier family 35, member G2	protein-coding	0.095000	0.746269	
mm_29176.1	chr3	106516918	106517118	-	1	NA	NA	NA	-30780	NM_001286986	67171	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0.000000	0.243781	
mm_163156.1	chr11	83743734	83743934	+	1	NA	NA	NA	-3106	NM_183249	66107	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.005000	0.462687	-43(CCCCTTTAAAGT,-,0.00),-42(CCCTTTAAAGTG,+,0.00),-41(CCTTTAAAGTGG,+,0.00)
mm_30473.1	chr3	154632301	154632501	-	1	NA	NA	NA	-35303	NM_172474	209584	Mm.347513	NM_172474	ENSMUSG00000047583	Tyw3	5230400J09Rik	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	protein-coding	0.005000	0.517413	
mm_108060.1	chr12	73930605	73930805	+	1	NA	NA	NA	22838	NM_001313919	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.040000	0.442786	
mm_10879.1	chr2	25242232	25242432	+	1	NA	NA	NA	-597	NM_176834	68846	Mm.24777	NM_176834	ENSMUSG00000044628	Rnf208	1110061N23Rik	ring finger protein 208	protein-coding	0.175000	0.776119	
mm_168736.1	chr12	115145837	115146037	-	1	NA	NA	NA	549857	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.000000	0.442786	
mm_121776.1	chr14	19890334	19890534	-	1	NA	NA	NA	51509	NR_105025	52512	Mm.483998	NR_105025		D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.010000	0.452736	
mm_36271.1	chr4	63729076	63729276	-	1	NA	NA	NA	15937	NM_177371	326623	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0.005000	0.383085	
mm_158457.1	chrX	140599110	140599310	-	1	NA	NA	NA	1312	NM_001077364	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.155000	0.800995	
mm_22825.1	chr3	27241327	27241527	+	1	NA	NA	NA	58423	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.025000	0.502488	
mm_152462.1	chr19	10881645	10881845	-	1	NA	NA	NA	-2	NM_134142	68539	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	0.100000	0.606965	
mm_37211.1	chr4	117887173	117887373	-	1	NA	NA	NA	56	NM_033617	114143	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	0.120000	0.706468	
mm_99166.1	chr11	100713860	100714060	+	1	NA	NA	NA	110	NM_029307	75482	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.080000	0.666667	
mm_18785.1	chr2	73660003	73660203	-	1	NA	NA	NA	320	NM_175752	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	0.025000	0.497512	-59(TGTTATAAAAGG,-,0.00)
mm_139009.1	chr17	45570367	45570567	+	1	NA	NA	NA	2794	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.015000	0.452736	
mm_77125.1	chr8	111333466	111333666	-	1	NA	NA	NA	4639	NM_001310613	74568	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0.025000	0.512438	
mm_32442.1	chr4	107257020	107257220	+	1	NA	NA	NA	3186	NM_028394	72938	Mm.21787	NM_028394	ENSMUSG00000063172	Hspb11	2900042B11Rik|IFT25	heat shock protein family B (small), member 11	protein-coding	0.010000	0.447761	
mm_5516.1	chr1	37559706	37559906	-	1	NA	NA	NA	-18790	NM_173870	269181	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.000000	0.457711	
mm_69382.1	chr7	131322006	131322206	-	1	NA	NA	NA	186	NM_008411	16433	Mm.142717	NM_008411	ENSMUSG00000040205	Cuzd1	Erg-1|Itmap1|Uo-44|Usg|Utczp	CUB and zona pellucida-like domains 1	protein-coding	0.015000	0.542289	
mm_48173.1	chr5	137153996	137154196	-	1	NA	NA	NA	-37889	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.030000	0.517413	
mm_120298.1	chr14	63138922	63139122	+	1	NA	NA	NA	16560	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.005000	0.492537	
mm_50028.1	chr6	41121936	41122136	+	1	NA	NA	NA	-86527	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.427861	
mm_37524.1	chr4	124708544	124708744	-	1	NA	NA	NA	-6217	NM_029157	75062	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	0.040000	0.592040	
mm_163172.1	chr11	87719558	87719758	-	1	NA	NA	NA	-17907	NM_009296	20922	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0.020000	0.522388	
mm_139204.1	chr17	47688900	47689100	+	1	NA	NA	NA	-614	NM_001164729	66119	Mm.89912	NM_025365	ENSMUSG00000033475	Tomm6	1110002E23Rik|AI663970	translocase of outer mitochondrial membrane 6 homolog (yeast)	protein-coding	0.115000	0.781095	
mm_57099.1	chr6	122590566	122590766	-	1	NA	NA	NA	11778	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.005000	0.388060	
mm_90434.1	chr10	127621691	127621891	+	1	NA	NA	NA	-643	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.060000	0.661692	
mm_70067.1	chr7	142652352	142652552	-	1	NA	NA	NA	2544	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.010000	0.631841	-16(CGCTTTTTAGGG,-,0.00),-14(CTTTTTAGGGGC,+,0.00)
mm_61315.1	chr7	68104057	68104257	+	1	NA	NA	NA	151900	NM_010513	16001	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.020000	0.427861	
mm_17791.1	chr2	33086339	33086539	-	1	NA	NA	NA	765	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.010000	0.407960	
mm_55295.1	chr6	54681833	54682033	-	1	NA	NA	NA	309	NM_001289740	68235	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.115000	0.696517	
mm_28977.1	chr3	101110063	101110263	-	1	NA	NA	NA	3	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding	0.145000	0.791045	
mm_84185.1	chr9	60141113	60141313	-	1	NA	NA	NA	7	NM_172444	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.020000	0.577114	
mm_46776.1	chr5	112394723	112394923	-	1	NA	NA	NA	-2610	NM_028386	72898	Mm.151745	NM_028386	ENSMUSG00000029348	Asphd2	2900006N09Rik|9230106G13Rik	aspartate beta-hydroxylase domain containing 2	protein-coding	0.185000	0.860697	
mm_145074.1	chr18	42141811	42142011	+	1	NA	NA	NA	54798	NM_027072	69401	Mm.34841	NM_027072	ENSMUSG00000059455	Plac8l1	1700009N18Rik|1700015M15Rik	PLAC8-like 1	protein-coding	0.000000	0.502488	
mm_108958.1	chr12	102368826	102369026	+	1	NA	NA	NA	70887	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.015000	0.587065	
mm_53663.1	chr6	141524477	141524677	+	1	NA	NA	NA	191	NM_021471	58807	Mm.284495	NM_021471	ENSMUSG00000030235	Slco1c1	OATP-14|OATP-F|Oatp2|Oatpf|Slc21a14	solute carrier organic anion transporter family, member 1c1	protein-coding	0.005000	0.507463	
mm_57721.1	chr6	128839536	128839736	-	1	NA	NA	NA	-13321	NM_030599	80782	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0.030000	0.532338	
mm_154673.1	chrX	7884205	7884405	+	1	NA	NA	NA	61	NM_078484	22232	Mm.214976	NM_078484	ENSMUSG00000031156	Slc35a2	AI327289|Had-1|Had1|Sfc8|UGT|Ugalt	solute carrier family 35 (UDP-galactose transporter), member A2	protein-coding	0.080000	0.696517	
mm_110456.1	chr12	51691804	51692004	-	1	NA	NA	NA	10	NM_001172098	94186	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.105000	0.726368	
mm_127603.1	chr15	102406201	102406401	+	1	NA	NA	NA	-15	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.070000	0.686567	
mm_152546.1	chr19	11372261	11372461	-	1	NA	NA	NA	-3127	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.005000	0.378109	
mm_6474.1	chr1	74068845	74069045	-	1	NA	NA	NA	55502	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.050000	0.691542	
mm_11445.1	chr2	32057512	32057712	+	1	NA	NA	NA	6666	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	0.010000	0.527363	
mm_26416.1	chr3	142610891	142611091	+	1	NA	NA	NA	-9672	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.000000	0.393035	
mm_124328.1	chr14	103843446	103843646	-	1	NA	NA	NA	155	NM_007904	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.060000	0.562189	
mm_152634.1	chr19	12501718	12501918	-	1	NA	NA	NA	178	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.090000	0.656716	
mm_118668.1	chr14	21989851	21990051	+	1	NA	NA	NA	-350	NM_145459	218820	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.050000	0.626866	
mm_152178.1	chr19	7382923	7383123	-	1	NA	NA	NA	3	NM_001033139	68229	Mm.34766	NM_001033139	ENSMUSG00000024970	AI846148	1700105P06Rik	expressed sequence AI846148	protein-coding	0.110000	0.726368	-4(CTCCATAAAAGG,-,0.00)
mm_32005.1	chr4	94624635	94624835	+	1	NA	NA	NA	10244	NM_026319	67694	Mm.240619	NM_026319	ENSMUSG00000028576	Ift74	1700029H06Rik|Ccdc2|Cmg1|b2b796Clo	intraflagellar transport 74	protein-coding	0.000000	0.318408	
mm_110868.1	chr12	73586358	73586558	-	1	NA	NA	NA	1662	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.030000	0.462687	
mm_26785.1	chr3	9609980	9610180	-	1	NA	NA	NA	5	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.130000	0.726368	
mm_85449.1	chr9	104319967	104320167	-	1	NA	NA	NA	17655	NM_019807	56318	Mm.19941	NM_019807	ENSMUSG00000032561	Acpp	5'-NT|A030005E02Rik|FRAP|Lap|PAP|Ppal	acid phosphatase, prostate	protein-coding	0.015000	0.407960	
mm_168995.1	chr13	100233806	100234006	+	1	NA	NA	NA	13430	NM_010870	17951	Mm.290476	NM_010870	ENSMUSG00000071203	Naip5	Birc1e|Lgn1|Naip-rs3	NLR family, apoptosis inhibitory protein 5	protein-coding	0.035000	0.522388	
mm_150591.1	chr19	40667510	40667710	+	1	NA	NA	NA	7840	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.005000	0.373134	
mm_60755.1	chr7	45513633	45513833	+	1	NA	NA	NA	27	NM_001045555	56734	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0.010000	0.542289	-77(GTCCCTTTAAGG,-,0.00),-75(CCCTTTAAGGAA,+,0.00)
mm_99605.1	chr11	104576872	104577072	+	1	NA	NA	NA	-14774	NR_130177	100415912	Mm.446786	NR_130177		Gm11665	Gm11664|OTTMUSG00000003182|OTTMUSG00000003183	predicted gene 11665	ncRNA	0.010000	0.557214	-34(TGGTATAAAAGG,-,0.00)
mm_135508.1	chr16	46990252	46990452	-	1	NA	NA	NA	-493385	NM_021497	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.000000	0.293532	
mm_142407.1	chr17	45474762	45474962	-	1	NA	NA	NA	76	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.060000	0.616915	
mm_52230.1	chr6	103664631	103664831	+	1	NA	NA	NA	153855	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.000000	0.388060	
mm_133416.1	chr16	85819142	85819342	+	1	NA	NA	NA	31	NR_040506	75310	Mm.108627	NR_040506		4930556C24Rik	-	RIKEN cDNA 4930556C24 gene	ncRNA	0.000000	0.452736	
mm_46352.1	chr5	102913036	102913236	-	1	NA	NA	NA	68129	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.040000	0.557214	
mm_82643.1	chr9	22015197	22015397	-	1	NA	NA	NA	12309	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.000000	0.611940	
mm_41445.1	chr5	90905225	90905425	+	1	NA	NA	NA	1426	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.025000	0.368159	
mm_155437.1	chrX	73494582	73494782	+	1	NA	NA	NA	-8404	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.020000	0.542289	
mm_17244.1	chr2	25621804	25622004	-	1	NA	NA	NA	98	NM_001040130	51875	Mm.271147	NM_001040130	ENSMUSG00000026939	Tmem141	1110065P14Rik|AI663999|D2Ertd217e	transmembrane protein 141	protein-coding	0.035000	0.631841	
mm_33478.1	chr4	130818696	130818896	+	1	NA	NA	NA	26259	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.020000	0.611940	
mm_162965.1	chr11	9118016	9118216	+	1	NA	NA	NA	13	NM_009477	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.015000	0.457711	
mm_103921.1	chr11	83592890	83593090	-	1	NA	NA	NA	97	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.000000	0.492537	-34(GCTTATAAATAC,+,0.00)
mm_131274.1	chr16	11011431	11011631	+	1	NA	NA	NA	2633	NR_040518	100043147	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.010000	0.572139	
mm_54169.1	chr6	23253999	23254199	-	1	NA	NA	NA	-5835	NM_028462	73191	Mm.55115	NM_028462	ENSMUSG00000029697	Fezf1	3110069A13Rik|Fez|Zfp312-like|fez-like	Fez family zinc finger 1	protein-coding	0.065000	0.686567	
mm_148158.1	chr18	77632042	77632242	-	1	NA	NA	NA	-67006	NM_001164504	225743	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0.010000	0.383085	
mm_1005.1	chr1	58722638	58722838	+	1	NA	NA	NA	-7814	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.005000	0.462687	-38(ATCTAGAAAAGG,-,0.00)
mm_172525.1	chr7	84713213	84713413	-	1	NA	NA	NA	23673	NR_038175	72495	Mm.382914	NR_038175	ENSMUSG00000085236	2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA	0.015000	0.447761	
mm_98754.1	chr11	96545476	96545676	+	1	NA	NA	NA	80985	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.005000	0.383085	
mm_18257.1	chr2	52272868	52273068	-	1	NA	NA	NA	-18034	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.005000	0.422886	2(AACTCTATAAGC,-,0.00)
mm_68440.1	chr7	109960401	109960601	-	1	NA	NA	NA	-31	NM_001311139	19347	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	0.120000	0.751244	
mm_115054.1	chr13	100651496	100651696	+	1	NA	NA	NA	-11	NM_001015889	108143	Mm.301148	NM_027139	ENSMUSG00000052293	Taf9	2310012M09Rik|AA673500|AU045423|TAFII31|TAFII32|Taf2g	TATA-box binding protein associated factor 9	protein-coding	0.165000	0.791045	
mm_72301.1	chr8	76899701	76899901	+	1	NA	NA	NA	372	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA	0.090000	0.706468	
mm_169578.1	chr15	22714108	22714308	-	1	NA	NA	NA	776	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding	0.040000	0.542289	
mm_45248.1	chr5	59985890	59986090	-	1	NA	NA	NA	12	NR_040683	71057	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.000000	0.487562	
mm_71405.1	chr8	46470963	46471163	+	1	NA	NA	NA	26	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.110000	0.716418	83(CCTTAAATAGCA,+,0.00)
mm_88051.1	chr10	67539929	67540129	+	1	NA	NA	NA	2099	NM_001347458	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.025000	0.621891	
mm_100508.1	chr11	120497994	120498194	+	1	NA	NA	NA	6257	NM_013770	27376	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0.025000	0.611940	
mm_49511.1	chr6	29859573	29859773	+	1	NA	NA	NA	77	NM_001171001	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.010000	0.442786	
mm_170872.1	chr2	20899761	20899961	+	1	NA	NA	NA	67860	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.050000	0.527363	
mm_131727.1	chr16	21825931	21826131	+	1	NA	NA	NA	31684	NR_037957	100043489	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	0.015000	0.437811	
mm_17538.1	chr2	29772159	29772359	-	1	NA	NA	NA	10731	NM_001177392	433416	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	OTTMUSG00000012686	predicted gene 13547	protein-coding	0.015000	0.482587	
mm_43595.1	chr5	137778803	137779003	+	1	NA	NA	NA	-15	NM_027242	69871	Mm.276058	NM_027242	ENSMUSG00000029725	Ppp1r35	2010007H12Rik|2010011D20Rik|AL024004	protein phosphatase 1, regulatory subunit 35	protein-coding	0.090000	0.636816	
mm_130309.1	chr15	97031113	97031313	-	1	NA	NA	NA	24743	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.025000	0.467662	
mm_163267.1	chr11	114741639	114741839	+	1	NA	NA	NA	8010	NR_037269	100526524		NR_037269	ENSMUSG00000077991	Mir466n	mmu-mir-466n	microRNA 466n	ncRNA	0.015000	0.507463	
mm_127803.1	chr15	4027250	4027450	-	1	NA	NA	NA	56	NR_028266	414066	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	0.100000	0.721393	
mm_65615.1	chr7	27532539	27532739	-	1	NA	NA	NA	9378	NM_001033315	233020	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.020000	0.552239	
mm_95356.1	chr11	48837403	48837603	+	1	NA	NA	NA	32	NM_001347446	94089	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.085000	0.681592	
mm_143892.1	chr17	84512031	84512231	-	1	NA	NA	NA	236	NM_177606	213556	Mm.215159	NM_177606	ENSMUSG00000040852	Plekhh2	AI256725|E030001K05|mKIAA2028	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	protein-coding	0.105000	0.711443	
mm_55146.1	chr6	51466291	51466491	-	1	NA	NA	NA	3503	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.000000	0.353234	0(CACCATAAATGG,-,0.00),2(CCATAAATGGTC,+,0.00)
mm_122772.1	chr14	54409204	54409404	-	1	NA	NA	NA	168	NM_001253680	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.005000	0.472637	
mm_119777.1	chr14	54179427	54179627	+	1	NA	NA	NA	74402	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.502488	
mm_128807.1	chr15	66949131	66949331	-	1	NA	NA	NA	20410	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.000000	0.432836	
mm_15917.1	chr2	165064897	165065097	+	1	NA	NA	NA	9361	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.000000	0.398010	
mm_40467.1	chr5	53671768	53671968	+	1	NA	NA	NA	26720	NR_024201	19866		NR_024201	ENSMUSG00000089083	Rnu7	-	U7 small nuclear RNA	snRNA	0.010000	0.562189	-34(GGGTTTTTAGGG,-,0.00)
mm_66920.1	chr7	60216747	60216947	-	1	NA	NA	NA	-76628	NM_001082962	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding	0.010000	0.527363	
mm_46956.1	chr5	114971023	114971223	-	1	NA	NA	NA	-61	NM_009327	21405	Mm.332607	NM_009327	ENSMUSG00000029556	Hnf1a	AI323641|HNF1|HNF1-alpha|HNF1[a]|Hnf-1|Hnf1alpha|LFB1|Tcf-1|Tcf1	HNF1 homeobox A	protein-coding	0.035000	0.577114	
mm_82518.1	chr9	20642201	20642401	-	1	NA	NA	NA	505	NM_013911	30843	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding	0.095000	0.646766	
mm_145930.1	chr18	67133624	67133824	+	1	NA	NA	NA	164	NM_010307	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.115000	0.696517	
mm_87830.1	chr10	60364151	60364351	+	1	NA	NA	NA	17400	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.055000	0.621891	22(TGGTCTATAAGC,-,0.00)
mm_95657.1	chr11	53770382	53770582	+	1	NA	NA	NA	9	NM_001159396	16362	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.165000	0.776119	
mm_117595.1	chr13	89742424	89742624	-	1	NA	NA	NA	-12	NM_001134475	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.035000	0.616915	
mm_82254.1	chr9	4796050	4796250	-	1	NA	NA	NA	84	NM_001113180	14802	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.050000	0.666667	
mm_34825.1	chr4	155066946	155067146	+	1	NA	NA	NA	16	NM_001042407	668173	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0.140000	0.726368	
mm_33740.1	chr4	134124434	134124634	+	1	NA	NA	NA	4219	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.020000	0.567164	
mm_168599.1	chr1	174172612	174172812	+	1	NA	NA	NA	-64	NM_011465	20739	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding	0.010000	0.457711	
mm_161337.1	chr14	51116500	51116700	+	1	NA	NA	NA	47	NM_203508	219026	Mm.297297	NM_203508	ENSMUSG00000072575	Eddm3b	Fam12|Gm75	epididymal protein 3B	protein-coding	0.000000	0.497512	-17(CTCTCTAAAAGC,-,0.00)
mm_120043.1	chr14	56575422	56575622	+	1	NA	NA	NA	-97	NM_001145978	328417	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	0.060000	0.577114	34(CCTCTAAGGGGC,+,0.00)
mm_89372.1	chr10	88732813	88733013	+	1	NA	NA	NA	1499	NM_025859	104303	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0.010000	0.358209	
mm_151894.1	chr19	5798797	5798997	-	1	NA	NA	NA	-2916	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.030000	0.482587	
mm_76038.1	chr8	77433161	77433361	-	1	NA	NA	NA	-83795	NR_028125	70345	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.010000	0.482587	
mm_74197.1	chr8	123805915	123806115	+	1	NA	NA	NA	19	NM_009003	19341	Mm.9221	NM_009003	ENSMUSG00000019478	Rab4a	AI848268|Rab4	RAB4A, member RAS oncogene family	protein-coding	0.130000	0.771144	
mm_91168.1	chr10	20697406	20697606	-	1	NA	NA	NA	27572	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.000000	0.442786	
mm_44607.1	chr5	25299483	25299683	-	1	NA	NA	NA	76690	NM_144908	231050	Mm.21814	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.005000	0.417910	
mm_159226.1	chr2	130839504	130839704	-	1	NA	NA	NA	83	NM_001311147	228602	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	0.055000	0.611940	
mm_154698.1	chrX	8271074	8271274	+	1	NA	NA	NA	-207	NM_172479	209837	Mm.6055	NM_172479	ENSMUSG00000031170	Slc38a5	C81234|E330031E14|JM24|SN2	solute carrier family 38, member 5	protein-coding	0.020000	0.447761	
mm_71651.1	chr8	60195787	60195987	+	1	NA	NA	NA	-310237	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.000000	0.492537	
mm_109179.1	chr12	108423048	108423248	+	1	NA	NA	NA	332	NM_001043335	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.140000	0.771144	
mm_13444.1	chr2	105160141	105160341	+	1	NA	NA	NA	33712	NM_144783	22431	Mm.389339	NM_144783	ENSMUSG00000016458	Wt1	D630046I19Rik|Wt-1	Wilms tumor 1 homolog	protein-coding	0.010000	0.527363	
mm_152000.1	chr19	5905407	5905607	-	1	NA	NA	NA	7364	NM_011262	19708	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	0.030000	0.542289	
mm_55343.1	chr6	56569093	56569293	-	1	NA	NA	NA	135506	NM_025520	66373	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.025000	0.512438	
mm_38037.1	chr4	133887724	133887924	-	1	NA	NA	NA	-27	NM_009097	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.165000	0.800995	
mm_163640.1	chr13	60895526	60895726	-	1	NA	NA	NA	1821	NM_007797	13025	Mm.30144	NM_007797	ENSMUSG00000074874	Ctla2b	AW545568|Ctla-2b	cytotoxic T lymphocyte-associated protein 2 beta	protein-coding	0.000000	0.462687	
mm_68531.1	chr7	113347183	113347383	-	1	NA	NA	NA	22056	NM_133700	68815	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0.000000	0.412935	
mm_49321.1	chr6	18866221	18866421	+	1	NA	NA	NA	3	NM_001167757	75196	Mm.67665	NM_029202	ENSMUSG00000029517	Ankrd7	4930532L20Rik|AV278427	ankyrin repeat domain 7	protein-coding	0.015000	0.452736	
mm_164147.1	chr15	60187107	60187307	-	1	NA	NA	NA	-170589	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.005000	0.422886	
mm_151257.1	chr19	53944789	53944989	+	1	NA	NA	NA	13	NM_019658	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.090000	0.736318	
mm_74245.1	chr8	124793706	124793906	+	1	NA	NA	NA	787	NM_198632	330863	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	0.090000	0.671642	
mm_71190.1	chr8	40869505	40869705	+	1	NA	NA	NA	7238	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.035000	0.497512	
mm_99801.1	chr11	107593725	107593925	+	1	NA	NA	NA	-43897	NR_105897	102465562		NR_105897	ENSMUSG00000098497	Mir6932	Gm27691|mmu-mir-6932	microRNA 6932	ncRNA	0.005000	0.258706	
mm_21796.1	chr2	164858091	164858291	-	1	NA	NA	NA	-483	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.025000	0.547264	75(GGCCCTAAAAGC,-,0.00)
mm_74698.1	chr8	15519835	15520035	-	1	NA	NA	NA	462282	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.070000	0.492537	-89(CCATTTAAAGTT,+,0.00)
mm_55842.1	chr6	83172656	83172856	-	1	NA	NA	NA	6832	NM_001198867	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.015000	0.562189	
mm_17651.1	chr2	32017248	32017448	-	1	NA	NA	NA	-33598	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	0.015000	0.547264	
mm_96746.1	chr11	69847257	69847457	+	1	NA	NA	NA	713	NR_033133	70310	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	0.025000	0.611940	
mm_88103.1	chr10	69095981	69096181	+	1	NA	NA	NA	-112471	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.025000	0.492537	
mm_13017.1	chr2	90987487	90987687	+	1	NA	NA	NA	47190	NM_017368	13046	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	0.010000	0.522388	
mm_68282.1	chr7	105599630	105599830	-	1	NA	NA	NA	386	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.015000	0.432836	58(GTTCTTTAAAGG,-,0.00)
mm_173051.1	chrX	122405466	122405666	+	1	NA	NA	NA	-8181	NM_138742	54561	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	0.040000	0.477612	
mm_38401.1	chr4	138968904	138969104	-	1	NA	NA	NA	1892	NM_025786	66825	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	0.040000	0.552239	
mm_62603.1	chr7	105736796	105736996	+	1	NA	NA	NA	171	NM_010562	16202	Mm.274846	NM_010562	ENSMUSG00000030890	Ilk	AA511515|ESTM24	integrin linked kinase	protein-coding	0.055000	0.676617	
mm_17392.1	chr2	27111908	27112108	-	1	NA	NA	NA	30469	NM_175427	109349	Mm.314080	NM_175427	ENSMUSG00000009216	Fam163b	C630035N08Rik	family with sequence similarity 163, member B	protein-coding	0.010000	0.517413	
mm_48369.1	chr5	139478201	139478401	-	1	NA	NA	NA	6190	NM_133349	100494	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.005000	0.373134	
mm_90014.1	chr10	115315555	115315755	+	1	NA	NA	NA	-64	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.095000	0.651741	-80(CCTCTAATGGCG,+,0.00)
mm_98079.1	chr11	86544891	86545091	+	1	NA	NA	NA	0	NM_001199045	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding	0.065000	0.497512	
mm_106781.1	chr12	4703133	4703333	+	1	NA	NA	NA	35150	NM_029107	74855	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	0.005000	0.278607	
mm_132547.1	chr16	37883239	37883439	+	1	NA	NA	NA	14939	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.025000	0.502488	
mm_13882.1	chr2	119972359	119972559	+	1	NA	NA	NA	-240	NM_011941	26390	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	0.085000	0.656716	
mm_148339.1	chr18	84518548	84518748	-	1	NA	NA	NA	70856	NM_001033341	240476	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.010000	0.457711	
mm_120561.1	chr14	68120859	68121059	+	1	NA	NA	NA	-2793	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.005000	0.517413	
mm_19195.1	chr2	84442575	84442775	-	1	NA	NA	NA	-17409	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.005000	0.457711	
mm_54142.1	chr6	21924822	21925022	-	1	NA	NA	NA	-24649	NM_001311061	71777	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0.000000	0.383085	
mm_85418.1	chr9	103480168	103480368	-	1	NA	NA	NA	60	NM_001002896	107993	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding	0.025000	0.597015	
mm_59563.1	chr7	28086375	28086575	+	1	NA	NA	NA	15239	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.030000	0.567164	
mm_170917.1	chr2	37261574	37261774	-	1	NA	NA	NA	-5277	NM_001081010	545417	Mm.379955	NM_001081010		Olfr367-ps	EG545417|MOR128-1|ORL1283|OTTMUSG00000012147|Olfr367	olfactory receptor 367, pseudogene	protein-coding	0.020000	0.412935	
mm_130813.1	chr15	101740257	101740457	-	1	NA	NA	NA	2740	NM_019956	56735	Mm.358677	NM_019956	ENSMUSG00000051879	Krt71	AA589543|Ca|Cal4|Cu|Krt2-6g|mK6irs|mK6irs1	keratin 71	protein-coding	0.020000	0.577114	
mm_62654.1	chr7	107693131	107693331	+	1	NA	NA	NA	64801	NM_001205227	320635	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	0.020000	0.482587	
mm_83050.1	chr9	37544930	37545130	-	1	NA	NA	NA	5775	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.065000	0.547264	
mm_58204.1	chr6	143535408	143535608	-	1	NA	NA	NA	115780	NR_045732	73425	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA	0.030000	0.537313	
mm_52823.1	chr6	121356786	121356986	+	1	NA	NA	NA	10189	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.020000	0.542289	
mm_76321.1	chr8	84687805	84688005	-	1	NA	NA	NA	-43	NM_025788	66830	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	0.105000	0.681592	
mm_108676.1	chr12	86678780	86678980	+	1	NA	NA	NA	180	NM_177354	238328	Mm.216101	NM_177354	ENSMUSG00000021256	Vash1	AI834978|D930046M13Rik|G630009D10Rik	vasohibin 1	protein-coding	0.125000	0.716418	
mm_93175.1	chr10	93516479	93516679	-	1	NA	NA	NA	23454	NM_027908	71761	Mm.244518	NM_027908	ENSMUSG00000015890	Amdhd1	1300019J08Rik	amidohydrolase domain containing 1	protein-coding	0.000000	0.343284	-85(GTTTTTAAAAGA,-,0.00)
mm_161145.1	chr13	22278291	22278491	+	1	NA	NA	NA	74	NM_134223	171257	Mm.377211	NM_134223	ENSMUSG00000069296	Vmn1r195	V1ri6	vomeronasal 1 receptor 195	protein-coding	0.005000	0.393035	
mm_49374.1	chr6	24543221	24543421	+	1	NA	NA	NA	15177	NM_080847	78910	Mm.160150	NM_080847	ENSMUSG00000029685	Asb15	4930400E23Rik|Asb-15	ankyrin repeat and SOCS box-containing 15	protein-coding	0.020000	0.447761	
mm_59406.1	chr7	27029550	27029750	+	1	NA	NA	NA	560	NM_133657	13085	Mm.20770	NM_133657	ENSMUSG00000060407	Cyp2a12	-	cytochrome P450, family 2, subfamily a, polypeptide 12	protein-coding	0.030000	0.532338	48(CCTTTAATACAC,+,0.00)
mm_39068.1	chr4	154082007	154082207	-	1	NA	NA	NA	15066	NM_001126330	22062	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0.005000	0.522388	
mm_118138.1	chr13	104951342	104951542	-	1	NA	NA	NA	-87549	NM_029984	77803	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik	family with sequence similarity 159, member B	protein-coding	0.045000	0.492537	
mm_11553.1	chr2	32727597	32727797	+	1	NA	NA	NA	8	NM_001252547	27387	Mm.9593	NM_013781	ENSMUSG00000059013	Sh2d3c	Chat|Nsp3|Shep1	SH2 domain containing 3C	protein-coding	0.055000	0.587065	
mm_128063.1	chr15	26743465	26743665	-	1	NA	NA	NA	151999	NM_176959	448987	Mm.253378	NM_176959	ENSMUSG00000043556	Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding	0.000000	0.447761	
mm_112345.1	chr12	116757116	116757316	-	1	NA	NA	NA	271496	NM_011215	19276	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	0.005000	0.447761	
mm_26357.1	chr3	142549248	142549448	+	1	NA	NA	NA	-10704	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.000000	0.293532	
mm_129649.1	chr15	80701473	80701673	-	1	NA	NA	NA	-3963	NR_045310	106059	Mm.442457	NR_045309		A430088P11Rik	-	RIKEN cDNA A430088P11 gene	ncRNA	0.015000	0.572139	
mm_21805.1	chr2	165034372	165034572	-	1	NA	NA	NA	307	NM_144892	228869	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	0.140000	0.726368	
mm_61089.1	chr7	51624502	51624702	+	1	NA	NA	NA	2772	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.005000	0.422886	
mm_9874.1	chr1	185203641	185203841	-	1	NA	NA	NA	-427	NM_001163754	98732	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	0.035000	0.467662	
mm_77277.1	chr8	116677716	116677916	-	1	NA	NA	NA	55175	NM_029441	75796	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.000000	0.383085	
mm_138462.1	chr17	35142206	35142406	+	1	NA	NA	NA	6592	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.005000	0.567164	
mm_163518.1	chr12	114844036	114844236	-	1	NA	NA	NA	-330442	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.005000	0.422886	
mm_160860.1	chr11	59662451	59662651	+	1	NA	NA	NA	56	NM_012027	26936	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	0.180000	0.835821	
mm_53219.1	chr6	126854301	126854501	+	1	NA	NA	NA	1303	NM_009650	11642	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	0.005000	0.467662	
mm_136433.1	chr16	94370622	94370822	-	1	NA	NA	NA	-12	NM_001159616	56176	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0.140000	0.751244	
mm_171955.1	chr5	8042889	8043089	+	1	NA	NA	NA	-3089	NM_025618	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.045000	0.487562	
mm_163840.1	chr14	19417832	19418032	+	1	NA	NA	NA	184655	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.353234	
mm_84814.1	chr9	77469855	77470055	-	1	NA	NA	NA	-70539	NR_040378	70487	Mm.58958	NR_040378	ENSMUSG00000099170	5730403I07Rik	-	RIKEN cDNA 5730403I07 gene	ncRNA	0.045000	0.567164	
mm_11051.1	chr2	27181478	27181678	+	1	NA	NA	NA	16071	NM_138942	13166	Mm.167781	NM_138942	ENSMUSG00000000889	Dbh	-	dopamine beta hydroxylase	protein-coding	0.025000	0.547264	
mm_33563.1	chr4	131920484	131920684	+	1	NA	NA	NA	-555	NR_102393	545681	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	OTTMUSG00000009742	predicted gene 12992	ncRNA	0.160000	0.840796	
mm_162424.1	chr1	92048989	92049189	-	1	NA	NA	NA	131252	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.000000	0.467662	
mm_72561.1	chr8	84083984	84084184	+	1	NA	NA	NA	-2015	NR_030490	735271		NR_030490	ENSMUSG00000076144	Mir709	Mirn709|mir-709|mmu-mir-709	microRNA 709	ncRNA	0.025000	0.577114	
mm_76646.1	chr8	93121485	93121685	-	1	NA	NA	NA	9698	NM_007954	13884	Mm.88078	NM_007954	ENSMUSG00000057400	Ces1c	Ces-N|Ee-1|Ee1|Es-4|Es-N|Es1|Es4|EsN|PESN	carboxylesterase 1C	protein-coding	0.000000	0.278607	
mm_69300.1	chr7	128345939	128346139	-	1	NA	NA	NA	-47908	NM_145590	233913	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.005000	0.447761	
mm_130857.1	chr15	102136128	102136328	-	1	NA	NA	NA	-13	NM_001033277	223918	Mm.385009	NM_001033277	ENSMUSG00000036966	Spryd3	BC008150	SPRY domain containing 3	protein-coding	0.100000	0.681592	
mm_27248.1	chr3	36613366	36613566	-	1	NA	NA	NA	-77	NM_027810	71492	Mm.286187	NM_027810	ENSMUSG00000037325	Bbs7	8430406N16Rik	Bardet-Biedl syndrome 7 (human)	protein-coding	0.080000	0.686567	
mm_84622.1	chr9	70585149	70585349	-	1	NA	NA	NA	42379	NM_025690	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.015000	0.467662	
mm_74728.1	chr8	17535520	17535720	-	1	NA	NA	NA	-235	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.085000	0.676617	
mm_65321.1	chr7	24954370	24954570	-	1	NA	NA	NA	15605	NR_106013	102465633		NR_106013	ENSMUSG00000098802	Mir7046	Gm27469|mmu-mir-7046	microRNA 7046	ncRNA	0.115000	0.736318	
mm_155563.1	chrX	75514229	75514429	+	1	NA	NA	NA	32	NM_011692	22327	Mm.8294	NM_011692	ENSMUSG00000031197	Vbp1	VBP-1	von Hippel-Lindau binding protein 1	protein-coding	0.070000	0.552239	
mm_36876.1	chr4	107177693	107177893	-	1	NA	NA	NA	573	NM_025617	66526	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0.015000	0.353234	
mm_49168.1	chr6	14901119	14901319	+	1	NA	NA	NA	-130	NM_053242	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.065000	0.552239	
mm_148828.1	chr19	6341084	6341284	+	1	NA	NA	NA	24	NR_117093	26412	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0.160000	0.830846	
mm_36596.1	chr4	88722370	88722570	-	1	NA	NA	NA	38	NM_172871	242521	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|ENSMUSG00000070923|mKIAA1354	kelch-like 9	protein-coding	0.090000	0.701493	
mm_155038.1	chrX	42139948	42140148	+	1	NA	NA	NA	-9364	NM_001077712	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.040000	0.482587	
mm_108159.1	chr12	76332307	76332507	+	1	NA	NA	NA	7516	NM_001101471	238276	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.005000	0.338308	
mm_81757.1	chr9	113969125	113969325	+	1	NA	NA	NA	24575	NR_039590	100628597		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	0.020000	0.522388	
mm_139739.1	chr17	60644617	60644817	+	1	NA	NA	NA	-1631395	NM_026497	67993	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.010000	0.393035	54(CTTTCTAAAAGG,-,0.00)
mm_64105.1	chr7	141047897	141048097	+	1	NA	NA	NA	-13277	NM_177897	330671	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.025000	0.592040	
mm_66812.1	chr7	47752535	47752735	-	1	NA	NA	NA	-151263	NM_153067	233222	Mm.240142	NM_153067	ENSMUSG00000078698	Mrgpra3	Mrga3	MAS-related GPR, member A3	protein-coding	0.010000	0.432836	-35(TGCTTTAAAAAG,-,0.00)
mm_113057.1	chr13	23710533	23710733	+	1	NA	NA	NA	221	NM_001347493	15216	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0.055000	0.626866	
mm_3848.1	chr1	160213020	160213220	+	1	NA	NA	NA	-228	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0.065000	0.567164	
mm_69996.1	chr7	142385790	142385990	-	1	NA	NA	NA	1980	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.005000	0.552239	
mm_88487.1	chr10	77706490	77706690	+	1	NA	NA	NA	3	NR_026831	16697	Mm.482251	NR_026831	ENSMUSG00000069584	Gm10272	ENSMUSG00000069584|Krtap12-4	keratin associated protein 12-4	pseudo	0.000000	0.542289	-34(GGGTATAAAAGC,-,0.00)
mm_129358.1	chr15	77945695	77945895	-	1	NA	NA	NA	10927	NM_001168260	239554	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	0.015000	0.597015	
mm_25365.1	chr3	107101457	107101657	+	1	NA	NA	NA	-10	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.160000	0.761194	
mm_86281.1	chr9	121839410	121839610	-	1	NA	NA	NA	-49	NM_028384	100502861	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	0.100000	0.671642	-46(ACCTTTAGAGGC,+,0.00)
mm_43641.1	chr5	138255658	138255858	+	1	NA	NA	NA	276	NM_001081108	66096	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	0.070000	0.577114	
mm_27236.1	chr3	36475540	36475740	-	1	NA	NA	NA	-116	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.070000	0.661692	
mm_65973.1	chr7	30440328	30440528	-	1	NA	NA	NA	5154	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.015000	0.557214	-97(GCTTTTAGATTG,+,0.00)
mm_148897.1	chr19	6909686	6909886	+	1	NA	NA	NA	88	NM_026306	67674	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.105000	0.636816	
mm_31099.1	chr4	41756158	41756358	+	1	NA	NA	NA	48	NM_001302511	14430	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	0.030000	0.512438	
mm_37952.1	chr4	133277534	133277734	-	1	NA	NA	NA	156	NM_025667	52174	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	0.125000	0.676617	
mm_149926.1	chr19	26748332	26748532	+	1	NA	NA	NA	29	NM_026003	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.035000	0.432836	
mm_125680.1	chr15	66642812	66643012	+	1	NA	NA	NA	-27858	NM_009375	21819	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	0.000000	0.293532	
mm_99343.1	chr11	101552098	101552298	+	1	NA	NA	NA	91	NM_001252220	17966	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	0.045000	0.512438	
mm_52940.1	chr6	122946969	122947169	+	1	NA	NA	NA	-5446	NM_001204241	73149	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.005000	0.422886	
mm_146025.1	chr18	69519732	69519932	+	1	NA	NA	NA	174111	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.020000	0.472637	
mm_53472.1	chr6	134924804	134925004	+	1	NA	NA	NA	-4188	NR_037956	381822	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	0.000000	0.303483	
mm_161623.1	chr16	59148765	59148965	+	1	NA	NA	NA	13	NM_146998	259000	Mm.390872	NM_146998	ENSMUSG00000062608	Olfr195	MOR184-5	olfactory receptor 195	protein-coding	0.000000	0.417910	
mm_81948.1	chr9	120492641	120492841	+	1	NA	NA	NA	135	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.115000	0.661692	
mm_38597.1	chr4	141844571	141844771	-	1	NA	NA	NA	350	NR_040641	69139	Mm.491056	NR_040641	ENSMUSG00000086818	Ctrcos	1810035I16Rik	chymotrypsin C (caldecrin), opposite strand	ncRNA	0.000000	0.432836	
mm_56249.1	chr6	90756675	90756875	-	1	NA	NA	NA	-40246	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.015000	0.527363	
mm_1834.1	chr1	82819560	82819760	+	1	NA	NA	NA	-19800	NM_001310713	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.025000	0.512438	
mm_116954.1	chr13	56135808	56136008	-	1	NA	NA	NA	-358	NM_001159513	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.025000	0.537313	-33(GTATTTAAAAAG,-,0.00)
mm_118799.1	chr14	24492730	24492930	+	1	NA	NA	NA	2149	NM_011297	20088	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	0.000000	0.422886	
mm_13604.1	chr2	113285618	113285818	+	1	NA	NA	NA	-14	NM_029232	75275	Mm.159484	NM_029232	ENSMUSG00000041255	Tmco5b	4930563P21Rik	transmembrane and coiled-coil domains 5B	protein-coding	0.005000	0.452736	
mm_132305.1	chr16	33684350	33684550	+	1	NA	NA	NA	-16	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629|OTTMUSG00000027315	heart development protein with EGF-like domains 1	protein-coding	0.130000	0.776119	
mm_120953.1	chr14	77036666	77036866	+	1	NA	NA	NA	-6	NM_001310648	108811	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	0.145000	0.771144	
mm_143612.1	chr17	78736520	78736720	-	1	NA	NA	NA	-60	NM_011500	268980	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	0.125000	0.771144	
mm_21696.1	chr2	164497360	164497560	-	1	NA	NA	NA	-65	NM_133779	78928	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	0.100000	0.646766	
mm_39702.1	chr5	27261924	27262124	+	1	NA	NA	NA	89	NM_001136060	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.060000	0.592040	
mm_27380.1	chr3	50443509	50443709	-	1	NA	NA	NA	4	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.030000	0.547264	-8(GCTTAAATACGG,+,0.00)
mm_1117.1	chr1	59912900	59913100	+	1	NA	NA	NA	-6	NM_001037725	72750	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0.120000	0.691542	
mm_156332.1	chrX	138999581	138999781	+	1	NA	NA	NA	85251	NM_013724	27206	Mm.482319	NM_013724	ENSMUSG00000052854	Nrk	AA407323|AA409510|AI225895|AV168563|AW538185|Nesk	Nik related kinase	protein-coding	0.020000	0.427861	
mm_57173.1	chr6	122847710	122847910	-	1	NA	NA	NA	8347	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.010000	0.482587	
mm_138872.1	chr17	43087805	43088005	+	1	NA	NA	NA	70386	NR_045155	545207	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0.020000	0.532338	
mm_26063.1	chr3	135826303	135826503	+	1	NA	NA	NA	613	NM_001135150	67547	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.100000	0.721393	
mm_69895.1	chr7	141637664	141637864	-	1	NA	NA	NA	17063	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.015000	0.552239	
mm_92358.1	chr10	75921494	75921694	-	1	NA	NA	NA	20	NM_011418	20587	Mm.279751	NM_011418	ENSMUSG00000000902	Smarcb1	AU020204|Baf47|Ini1|SNF5/INI1|Snf5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding	0.125000	0.666667	-87(GTCCCTTTAAGG,-,0.00),-86(TCCCTTTAAGGG,-,0.00),-85(CCCTTTAAGGGC,+,0.00),-84(CCTTTAAGGGCT,+,0.00)
mm_56614.1	chr6	112490943	112491143	-	1	NA	NA	NA	-1235	NM_001081147	18430	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding	0.075000	0.646766	
mm_119587.1	chr14	50930021	50930221	+	1	NA	NA	NA	728	NM_001310506	219024	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161	transmembrane protein 55b	protein-coding	0.025000	0.467662	
mm_34693.1	chr4	152008942	152009142	+	1	NA	NA	NA	151	NM_001033352	242785	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	0.145000	0.721393	
mm_4727.1	chr1	181352380	181352580	+	1	NA	NA	NA	-148	NM_028408	72978	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	0.145000	0.741294	
mm_35180.1	chr4	15299986	15300186	-	1	NA	NA	NA	34266	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.005000	0.517413	-34(ATCTATAAAAAG,-,0.00)
mm_41.1	chr1	6487223	6487423	+	1	NA	NA	NA	92	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.005000	0.407960	
mm_9620.1	chr1	176734921	176735121	-	1	NA	NA	NA	37402	NR_029775	723921		NR_029775	ENSMUSG00000065573	Mir350	Mirn350|mir-350|mmu-mir-350	microRNA 350	ncRNA	0.005000	0.343284	
mm_42463.1	chr5	115443082	115443282	+	1	NA	NA	NA	13497	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.005000	0.353234	
mm_122187.1	chr14	31640461	31640661	-	1	NA	NA	NA	404	NM_019975	56794	Mm.38887	NM_019975	ENSMUSG00000021884	Hacl1	1600020H07Rik|Hpcl|Phyh2	2-hydroxyacyl-CoA lyase 1	protein-coding	0.035000	0.552239	
mm_132560.1	chr16	38089021	38089221	+	1	NA	NA	NA	120	NM_019827	56637	Mm.394930	NM_019827	ENSMUSG00000022812	Gsk3b	7330414F15Rik|8430431H08Rik|C86142|GSK-3|GSK-3beta|GSK3	glycogen synthase kinase 3 beta	protein-coding	0.070000	0.587065	
mm_33528.1	chr4	130932206	130932406	+	1	NA	NA	NA	-12079	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.000000	0.432836	
mm_86103.1	chr9	115310145	115310345	-	1	NA	NA	NA	176	NM_024222	68292	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0.115000	0.711443	
mm_102989.1	chr11	69685428	69685628	-	1	NA	NA	NA	26	NM_001159505	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.025000	0.626866	
mm_133919.1	chr16	97557992	97558192	+	1	NA	NA	NA	22009	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.000000	0.447761	-78(GCTCTTAGAGAG,+,0.00)
mm_171034.1	chr2	91265223	91265423	+	1	NA	NA	NA	208	NM_023854	77038	Mm.43636	NM_023854	ENSMUSG00000027255	Arfgap2	2310032E02Rik|Zfp289	ADP-ribosylation factor GTPase activating protein 2	protein-coding	0.115000	0.641791	
mm_46899.1	chr5	114091281	114091481	-	1	NA	NA	NA	-1	NM_026805	68666	Mm.63584	NM_026805	ENSMUSG00000042078	Svop	1110030H18Rik|AI415691|msvop	SV2 related protein	protein-coding	0.080000	0.731343	
mm_30964.1	chr4	33924983	33925183	+	1	NA	NA	NA	451	NM_007726	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding	0.040000	0.656716	
mm_43323.1	chr5	134986727	134986927	+	1	NA	NA	NA	613	NM_009902	12739	Mm.158662	NM_009902	ENSMUSG00000070473	Cldn3	AI182374|Cpetr2|mRVP1	claudin 3	protein-coding	0.075000	0.606965	
mm_77242.1	chr8	115705201	115705401	-	1	NA	NA	NA	1593	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.010000	0.427861	
mm_110058.1	chr12	21286039	21286239	-	1	NA	NA	NA	98	NM_008403	16413	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	0.105000	0.701493	
mm_112671.1	chr13	16027404	16027604	+	1	NA	NA	NA	15653	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.442786	86(GAGTTTTAAAGG,-,0.00),88(GTTTTAAAGGGC,+,0.00)
mm_137246.1	chr17	24488577	24488777	+	1	NA	NA	NA	-106	NM_027937	268932	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	0.195000	0.850746	
mm_61329.1	chr7	68263666	68263866	+	1	NA	NA	NA	467	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.010000	0.522388	-35(TCCTTTAAAAAG,-,0.00),-34(CCTTTAAAAAGG,+,0.00),-33(CTTTAAAAAGGA,+,0.00)
mm_4467.1	chr1	173350093	173350293	+	1	NA	NA	NA	-16690	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	0.010000	0.517413	
mm_112909.1	chr13	20908450	20908650	+	1	NA	NA	NA	114437	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.298507	
mm_32538.1	chr4	109015419	109015619	+	1	NA	NA	NA	-2136	NR_030432	791075		NR_030432	ENSMUSG00000076444	Mir761	Mirn761|mir-761|mmu-mir-761	microRNA 761	ncRNA	0.010000	0.398010	
mm_149827.1	chr19	24477518	24477718	+	1	NA	NA	NA	-144	NM_026520	68034	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding	0.095000	0.631841	
mm_164117.1	chr15	34248634	34248834	-	1	NA	NA	NA	10708	NM_033521	114128	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	0.000000	0.502488	-36(CACTATAAAAGA,-,0.00)
mm_552.1	chr1	38019137	38019337	+	1	NA	NA	NA	21227	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.045000	0.442786	-31(GTCCAGAAAAGG,-,0.00)
mm_58631.1	chr7	5089016	5089216	+	1	NA	NA	NA	8881	NM_001252454	13854	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0.005000	0.328358	
mm_91496.1	chr10	37135907	37136107	-	1	NA	NA	NA	2919	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.005000	0.388060	
mm_152622.1	chr19	12464194	12464394	-	1	NA	NA	NA	3515	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.010000	0.457711	
mm_86117.1	chr9	115611670	115611870	-	1	NA	NA	NA	229951	NR_130329	100316675		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	0.010000	0.462687	-33(TGGCATAAAAAG,-,0.00)
mm_82432.1	chr9	15045051	15045251	-	1	NA	NA	NA	327	NM_019482	55991	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.145000	0.771144	
mm_75951.1	chr8	71665468	71665668	-	1	NA	NA	NA	6189	NM_001029873	382018	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.010000	0.497512	
mm_107608.1	chr12	49384470	49384670	+	1	NA	NA	NA	1563	NM_008241	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.070000	0.631841	
mm_50832.1	chr6	54736363	54736563	+	1	NA	NA	NA	54839	NM_001289740	68235	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.015000	0.368159	
mm_7823.1	chr1	132041856	132042056	-	1	NA	NA	NA	26106	NM_172510	213006	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4a	A230072B04|A930031D07Rik|AI850289|Mfsd4	major facilitator superfamily domain containing 4A	protein-coding	0.020000	0.562189	
mm_99119.1	chr11	100145362	100145562	+	1	NA	NA	NA	464	NM_008471	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.065000	0.631841	
mm_160668.1	chr9	121950772	121950972	+	1	NA	NA	NA	-116	NM_177743	245050	Mm.71062	NM_177743	ENSMUSG00000038233	Fam198a	C730027P07Rik	family with sequence similarity 198, member A	protein-coding	0.015000	0.611940	
mm_114094.1	chr13	54687844	54688044	+	1	NA	NA	NA	-136	NM_001146026	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.100000	0.631841	
mm_85266.1	chr9	99423016	99423216	-	1	NA	NA	NA	13596	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.010000	0.497512	
mm_116235.1	chr13	33569388	33569588	-	1	NA	NA	NA	-171	NR_131141	619715	Mm.390575	NR_131140		Gm6093	EG619715	predicted gene 6093	ncRNA	0.005000	0.422886	
mm_138931.1	chr17	43801819	43802019	+	1	NA	NA	NA	68	NM_207649	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.135000	0.781095	
mm_150004.1	chr19	29287942	29288142	+	1	NA	NA	NA	36239	NM_008413	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.015000	0.462687	
mm_66987.1	chr7	63999126	63999326	-	1	NA	NA	NA	-60311	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.015000	0.532338	
mm_37858.1	chr4	132270112	132270312	-	1	NA	NA	NA	-26	NR_002865	353373	Mm.424675	NR_002865		Rnu11	MBII-407|Mirn801|mir-801|mmu-mir-801	U11 small nuclear RNA	snRNA	0.070000	0.467662	
mm_69483.1	chr7	133782642	133782842	-	1	NA	NA	NA	43	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.020000	0.532338	
mm_127672.1	chr15	102671857	102672057	+	1	NA	NA	NA	-91	NR_030460	751542		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	0.075000	0.661692	
mm_91641.1	chr10	42276573	42276773	-	1	NA	NA	NA	69	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.110000	0.716418	
mm_118390.1	chr13	118387150	118387350	-	1	NA	NA	NA	2	NM_021556	59054	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	0.095000	0.636816	
mm_66316.1	chr7	40636356	40636556	-	1	NA	NA	NA	-38281	NR_045504	71029	Mm.399496	NR_045504	ENSMUSG00000102004	4933402C06Rik	-	RIKEN cDNA 4933402C06 gene	ncRNA	0.010000	0.457711	
mm_77183.1	chr8	111732019	111732219	-	1	NA	NA	NA	17	NM_001198839	12927	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0.140000	0.751244	
mm_106177.1	chr11	116680794	116680994	-	1	NA	NA	NA	6297	NR_028570	100216538		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0.025000	0.537313	
mm_55660.1	chr6	72394442	72394642	-	1	NA	NA	NA	-3875	NM_016794	22320	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.000000	0.517413	
mm_105951.1	chr11	115297415	115297615	-	1	NA	NA	NA	31	NM_178035	328035	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804|OTTMUSG00000021749	fatty acid desaturase domain family, member 6	protein-coding	0.095000	0.681592	
mm_39625.1	chr5	24426755	24426955	+	1	NA	NA	NA	-666	NM_001253892	20535	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0.020000	0.587065	
mm_17899.1	chr2	35101445	35101645	-	1	NA	NA	NA	-860	NM_001243103	98870	Mm.415380	NM_178885	ENSMUSG00000035875	AI182371	AI046667	expressed sequence AI182371	protein-coding	0.000000	0.378109	
mm_26330.1	chr3	142544153	142544353	+	1	NA	NA	NA	13917	NM_145545	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.010000	0.412935	
mm_3305.1	chr1	137898489	137898689	+	1	NA	NA	NA	-67866	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.030000	0.522388	
mm_121292.1	chr14	105258740	105258940	+	1	NA	NA	NA	167	NM_001190989	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.175000	0.771144	
mm_127230.1	chr15	99405763	99405963	+	1	NA	NA	NA	12644	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.040000	0.552239	-58(CCTTCTAAAAGC,-,0.00)
mm_23297.1	chr3	52268316	52268516	+	1	NA	NA	NA	79	NM_019739	56458	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.165000	0.761194	
mm_172775.1	chr8	95271869	95272069	-	1	NA	NA	NA	34616	NM_145601	333329	Mm.484049	NM_145601	ENSMUSG00000031789	Cngb1	Cngb1b|Garp2|Gm1959	cyclic nucleotide gated channel beta 1	protein-coding	0.010000	0.572139	
mm_13783.1	chr2	118779799	118779999	+	1	NA	NA	NA	180	NM_170593	214240	Mm.221499	NM_170593	ENSMUSG00000040035	Disp2	AI840597|B230210L08Rik|DispB|mKIAA1742	dispatched RND tramsporter family member 2	protein-coding	0.035000	0.532338	49(TCCTAAATAGCC,+,0.00)
mm_132999.1	chr16	55949111	55949311	+	1	NA	NA	NA	-14363	NM_001159365	74201	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	0.025000	0.437811	
mm_136135.1	chr16	86808714	86808914	-	1	NA	NA	NA	-545371	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0.020000	0.378109	
mm_42458.1	chr5	115435420	115435620	+	1	NA	NA	NA	5835	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.030000	0.537313	
mm_20355.1	chr2	128054865	128055065	-	1	NA	NA	NA	-71073	NM_207681	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.005000	0.467662	
mm_37145.1	chr4	116993647	116993847	-	1	NA	NA	NA	666	NM_009478	22275	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	0.035000	0.557214	
mm_123014.1	chr14	55106431	55106631	-	1	NA	NA	NA	62	NM_001303502	11766	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0.040000	0.597015	
mm_92716.1	chr10	80797898	80798098	-	1	NA	NA	NA	628	NM_023900	78670	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.090000	0.681592	
mm_88237.1	chr10	71388403	71388603	+	1	NA	NA	NA	40740	NM_027184	69718	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.020000	0.383085	
mm_1654.1	chr1	74666164	74666364	+	1	NA	NA	NA	4510	NM_001014974	67534	Mm.260714	NM_001014974	ENSMUSG00000033257	Ttll4	4632407P03Rik|AI451681|mKIAA0173	tubulin tyrosine ligase-like family, member 4	protein-coding	0.005000	0.412935	
mm_1849.1	chr1	83116668	83116868	+	1	NA	NA	NA	2	NM_001159738	20297	Mm.116739	NM_016960	ENSMUSG00000026166	Ccl20	CKb4|LARC|MIP-3A|MIP-3[a]|MIP3A|ST38|Scya20|exodus-1	chemokine (C-C motif) ligand 20	protein-coding	0.025000	0.547264	
mm_46679.1	chr5	109556442	109556642	-	1	NA	NA	NA	2451	NM_016715	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.040000	0.631841	
mm_157280.1	chrX	20618107	20618307	-	1	NA	NA	NA	448	NM_145627	236732	Mm.279194	NM_145627	ENSMUSG00000031060	Rbm10	E430039K10Rik	RNA binding motif protein 10	protein-coding	0.070000	0.631841	
mm_104490.1	chr11	95834024	95834224	-	1	NA	NA	NA	-8171	NM_023121	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.050000	0.661692	
mm_10848.1	chr2	24976086	24976286	+	1	NA	NA	NA	153	NM_146251	241274	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0.020000	0.482587	
mm_156475.1	chrX	143684961	143685161	+	1	NA	NA	NA	-8226	NM_001195047	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding	0.015000	0.442786	
mm_79180.1	chr9	48314377	48314577	+	1	NA	NA	NA	26421	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.010000	0.497512	
mm_91793.1	chr10	53376047	53376247	-	1	NA	NA	NA	3704	NM_001204983	100038725	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	ENSMUSG00000038594|Gm9766	centrosomal protein 85-like	protein-coding	0.005000	0.427861	
mm_63897.1	chr7	138940280	138940480	+	1	NA	NA	NA	-350	NM_028708	74004	Mm.334298	NM_028708		Jakmip3	6330417G02Rik|AI593226|mKIAA4091	janus kinase and microtubule interacting protein 3	protein-coding	0.065000	0.592040	
mm_163667.1	chr13	80883267	80883467	+	1	NA	NA	NA	-55	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.105000	0.671642	11(GCTCTTAAAGTG,+,0.00)
mm_89176.1	chr10	86343848	86344048	+	1	NA	NA	NA	43536	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.020000	0.487562	
mm_134695.1	chr16	22622227	22622427	-	1	NA	NA	NA	34904	NM_138650	110197	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0.040000	0.582090	
mm_141419.1	chr17	29434615	29434815	-	1	NA	NA	NA	-56330	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.025000	0.527363	
mm_48278.1	chr5	138116760	138116960	-	1	NA	NA	NA	-45	NM_001044703	22697	Mm.2760	NM_011757	ENSMUSG00000037017	Zscan21	AI326272|CTfin51|RU49|Zfp-38|Zfp38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding	0.060000	0.572139	
mm_3990.1	chr1	164438391	164438591	+	1	NA	NA	NA	19864	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.030000	0.482587	
mm_106205.1	chr11	116850535	116850735	-	1	NA	NA	NA	2459	NM_011358	20382	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0.000000	0.328358	
mm_127834.1	chr15	6708783	6708983	-	1	NA	NA	NA	502	NM_030168	78757	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.110000	0.776119	
mm_30455.1	chr3	153912851	153913051	-	1	NA	NA	NA	15	NM_001163478	19352	Mm.277831	NM_011231	ENSMUSG00000038975	Rabggtb	-	Rab geranylgeranyl transferase, b subunit	protein-coding	0.150000	0.761194	
mm_160262.1	chr7	109752572	109752772	-	1	NA	NA	NA	-409	NM_020050	56786	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	0.065000	0.636816	
mm_161176.1	chr13	41110174	41110374	-	1	NA	NA	NA	-286	NM_008104	107889	Mm.1399	NM_008104	ENSMUSG00000021362	Gcm2	Gcm-rs1|Gcm1|Gcm1-rs2	glial cells missing homolog 2 (Drosophila)	protein-coding	0.000000	0.457711	
mm_129113.1	chr15	76071467	76071667	-	1	NA	NA	NA	-1783	NM_001310542	105782	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	0.030000	0.621891	
mm_137583.1	chr17	28007489	28007689	+	1	NA	NA	NA	72995	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.050000	0.507463	-32(CCTTATATAGCA,+,0.00)
mm_52332.1	chr6	109739742	109739942	+	1	NA	NA	NA	-905670	NM_001346640	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.000000	0.348259	
mm_88979.1	chr10	81559373	81559573	+	1	NA	NA	NA	29	NM_001276288	14797	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.180000	0.820896	
mm_31145.1	chr4	43384145	43384345	+	1	NA	NA	NA	2263	NM_001037709	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.005000	0.457711	
mm_154421.1	chrM	16132	16332	+	1	NA	NA	NA	NA	NA									0.011976	0.273810	
mm_9447.1	chr1	172590534	172590734	-	1	NA	NA	NA	-66	NM_029084	74748	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	0.020000	0.517413	
mm_36251.1	chr4	63403269	63403469	-	1	NA	NA	NA	76	NM_001045514	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.020000	0.611940	
mm_59112.1	chr7	19817625	19817825	+	1	NA	NA	NA	5030	NM_033601	12051	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.015000	0.567164	86(AGCCCTTTAAGG,-,0.00),88(CCCTTTAAGGAC,+,0.00)
mm_170924.1	chr2	39005005	39005205	-	1	NA	NA	NA	26	NM_025592	66489	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0.125000	0.691542	
mm_23130.1	chr3	37734606	37734806	+	1	NA	NA	NA	-10346	NM_198657	381438	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.035000	0.532338	-54(TCCTTTAAAAAA,-,0.00)
mm_123070.1	chr14	55709381	55709581	-	1	NA	NA	NA	3607	NM_019984	21816	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	0.040000	0.582090	
mm_168427.1	chr1	133610146	133610346	-	1	NA	NA	NA	34	NM_009227	20643	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	0.100000	0.626866	
mm_145690.1	chr18	61952985	61953185	+	1	NA	NA	NA	10	NM_172628	225608	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	0.030000	0.666667	
mm_37541.1	chr4	125122419	125122619	-	1	NA	NA	NA	5362	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.010000	0.572139	
mm_132120.1	chr16	31695803	31696003	+	1	NA	NA	NA	31968	NM_001252434	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.005000	0.358209	
mm_25912.1	chr3	131123659	131123859	+	1	NA	NA	NA	10968	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.025000	0.422886	
mm_156618.1	chrX	153558493	153558693	+	1	NA	NA	NA	0	NM_173367	69361	Mm.46095	NM_173367	ENSMUSG00000048573	Cypt3	1700006H02Rik|Ckt1r1	cysteine-rich perinuclear theca 3	protein-coding	0.035000	0.611940	
mm_113866.1	chr13	48490940	48491140	+	1	NA	NA	NA	22370	NM_001164575	67911	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	0.030000	0.567164	
mm_4088.1	chr1	167001364	167001564	+	1	NA	NA	NA	47	NM_001160261	226610	Mm.389217	NM_175461	ENSMUSG00000060568	Fam78b	C030014K22Rik|C030020L09Rik	family with sequence similarity 78, member B	protein-coding	0.185000	0.820896	
mm_155201.1	chrX	56731331	56731531	+	1	NA	NA	NA	-330	NM_010211	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.140000	0.796020	
mm_114896.1	chr13	94394639	94394839	+	1	NA	NA	NA	35779	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.015000	0.437811	
mm_156105.1	chrX	114284464	114284664	+	1	NA	NA	NA	-189769	NM_001290478	237010	Mm.132583	NM_172781	ENSMUSG00000025597	Klhl4	B130014A11|C130018J01Rik	kelch-like 4	protein-coding	0.000000	0.417910	
mm_30832.1	chr4	21931406	21931606	+	1	NA	NA	NA	180	NM_175234	76132	Mm.159689	NM_175234	ENSMUSG00000028246	Faxc	6230409E13Rik|AW742931	failed axon connections homolog	protein-coding	0.150000	0.786070	
mm_166735.1	chr6	122921694	122921894	+	1	NA	NA	NA	-54	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.005000	0.407960	
mm_98526.1	chr11	94990883	94991083	+	1	NA	NA	NA	-229	NM_172261	217124	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.115000	0.741294	
mm_118613.1	chr14	21032335	21032535	+	1	NA	NA	NA	20007	NM_018829	55946	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.005000	0.512438	
mm_90527.1	chr10	128083863	128084063	+	1	NA	NA	NA	656	NM_016774	11947	Mm.238973	NM_016774	ENSMUSG00000025393	Atp5b	-	ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit	protein-coding	0.065000	0.601990	
mm_15600.1	chr2	160670046	160670246	+	1	NA	NA	NA	24249	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.025000	0.432836	
mm_77263.1	chr8	115707526	115707726	-	1	NA	NA	NA	-732	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.015000	0.447761	-80(TGCTTTAAAAAA,-,0.00)
mm_65594.1	chr7	27333521	27333721	-	1	NA	NA	NA	27	NM_001113549	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.160000	0.840796	
mm_131782.1	chr16	22895908	22896108	+	1	NA	NA	NA	-1622	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.025000	0.557214	
mm_67336.1	chr7	79792931	79793131	-	1	NA	NA	NA	559	NM_008588	17292	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0.120000	0.706468	
mm_112768.1	chr13	19357963	19358163	+	1	NA	NA	NA	37750	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.522388	
mm_155134.1	chrX	49493058	49493258	+	1	NA	NA	NA	22708	NM_001081123	75404	Mm.44305	NM_001081123	ENSMUSG00000036198	Arhgap36	1100001E04Rik|rho-gap	Rho GTPase activating protein 36	protein-coding	0.005000	0.497512	
mm_68116.1	chr7	102100111	102100311	-	1	NA	NA	NA	18	NR_111935	11875	Mm.2816	NM_007491	ENSMUSG00000070424	Art5	ARTC5|Yac-2	ADP-ribosyltransferase 5	protein-coding	0.045000	0.547264	
mm_25119.1	chr3	102012197	102012397	+	1	NA	NA	NA	2152	NM_178777	18072	Mm.137286	NM_178777	ENSMUSG00000048540	Nhlh2	6230401I09Rik|Hen2|NSCL2|Nscl-2|bHLHa34	nescient helix loop helix 2	protein-coding	0.030000	0.592040	-35(CTCCATTAAAAC,-,0.00),-33(CCATTAAAACCC,+,0.00)
mm_124712.1	chr15	6569462	6569662	+	1	NA	NA	NA	-10285	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.020000	0.527363	
mm_54885.1	chr6	43266503	43266703	-	1	NA	NA	NA	959	NM_133674	54324	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	0.010000	0.542289	
mm_163857.1	chr14	19418461	19418661	+	1	NA	NA	NA	184026	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.358209	
mm_91335.1	chr10	25536035	25536235	-	1	NA	NA	NA	137	NM_001195596	100504474	Mm.46323	NM_001195596	ENSMUSG00000096546	Smlr1	2010003K15Rik	small leucine-rich protein 1	protein-coding	0.030000	0.552239	
mm_137571.1	chr17	27840109	27840309	+	1	NA	NA	NA	122	NM_011432	20630	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	0.075000	0.676617	
mm_47899.1	chr5	134906622	134906822	-	1	NA	NA	NA	11	NM_029681	76629	Mm.159750	NM_029681	ENSMUSG00000040576	Wbscr28	1700111I05Rik	Williams-Beuren syndrome chromosome region 28 (human)	protein-coding	0.015000	0.611940	
mm_133344.1	chr16	81237639	81237839	+	1	NA	NA	NA	37042	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.025000	0.412935	
mm_69312.1	chr7	128418285	128418485	-	1	NA	NA	NA	-213	NM_026418	67865	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.120000	0.731343	
mm_89983.1	chr10	111972678	111972878	+	1	NA	NA	NA	83	NM_178610	52705	Mm.34606	NM_178610	ENSMUSG00000063334	Krr1	2610511F02Rik|AI255219|AI428520|D10Ertd773e|Hrb2	KRR1, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0.070000	0.537313	
mm_8866.1	chr1	162813848	162814048	-	1	NA	NA	NA	-1399	NM_144878	226564	Mm.155164	NM_144878	ENSMUSG00000026692	Fmo4	D1Ertd532e	flavin containing monooxygenase 4	protein-coding	0.030000	0.502488	
mm_80080.1	chr9	70012503	70012703	+	1	NA	NA	NA	55	NM_001282083	235459	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	0.125000	0.756219	
mm_148309.1	chr18	83637839	83638039	-	1	NA	NA	NA	-312055	NR_045361	70960	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0.020000	0.398010	
mm_162025.1	chr19	47015143	47015343	-	1	NA	NA	NA	-54	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.190000	0.786070	
mm_17091.1	chr2	23034892	23035092	-	1	NA	NA	NA	5249	NM_001077192	11308	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.005000	0.442786	72(CACTTTAAAAAA,-,0.00)
mm_52620.1	chr6	117173933	117174133	+	1	NA	NA	NA	5498	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.030000	0.582090	
mm_108541.1	chr12	84316748	84316948	+	1	NA	NA	NA	-11	NR_045546	52708	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	0.080000	0.651741	
mm_70652.1	chr8	14370069	14370269	+	1	NA	NA	NA	274294	NM_172910	244310	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	discs, large (Drosophila) homolog-associated protein 2	protein-coding	0.010000	0.388060	
mm_149721.1	chr19	21778244	21778444	+	1	NA	NA	NA	4	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.120000	0.736318	
mm_52993.1	chr6	123267008	123267208	+	1	NA	NA	NA	5001	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.025000	0.452736	
mm_163675.1	chr13	83721299	83721499	+	1	NA	NA	NA	-6707	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.020000	0.517413	
mm_130905.1	chr15	102510593	102510793	-	1	NA	NA	NA	6311	NM_001163643	26404	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0.085000	0.701493	
mm_101009.1	chr11	8503700	8503900	-	1	NA	NA	NA	160735	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.035000	0.552239	
mm_116860.1	chr13	54765778	54765978	-	1	NA	NA	NA	562	NM_033610	104069	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	0.070000	0.651741	
mm_22814.1	chr3	27188327	27188527	+	1	NA	NA	NA	5423	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.000000	0.432836	
mm_53592.1	chr6	137782825	137783025	+	1	NA	NA	NA	28348	NM_172733	232449	Mm.29181	NM_172733	ENSMUSG00000030225	Dera	2010002D22Rik|2500002K03Rik|DEOC	deoxyribose-phosphate aldolase (putative)	protein-coding	0.020000	0.462687	32(TCATTTAAAGAC,+,0.00)
mm_141349.1	chr17	28621974	28622174	-	1	NA	NA	NA	380	NM_016795	20815	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	0.095000	0.696517	
mm_101512.1	chr11	32277921	32278121	-	1	NA	NA	NA	1421	NM_010405	15126	Mm.141758	NM_010405	ENSMUSG00000055609	Hba-x	AI450015|Hbz	hemoglobin X, alpha-like embryonic chain in Hba complex	protein-coding	0.030000	0.517413	
mm_97723.1	chr11	80383223	80383423	+	1	NA	NA	NA	44	NM_001130171	22680	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0.075000	0.577114	
mm_164738.1	chr17	71787116	71787316	+	1	NA	NA	NA	5269	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	0.015000	0.427861	
mm_21039.1	chr2	152511640	152511840	-	1	NA	NA	NA	-4	NM_001039120	654457	Mm.389363	NM_001039120	ENSMUSG00000074680	Defb26	EG654457	defensin beta 26	protein-coding	0.005000	0.477612	
mm_148816.1	chr19	6297891	6298091	+	1	NA	NA	NA	-8466	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.005000	0.572139	
mm_29494.1	chr3	115887969	115888169	-	1	NA	NA	NA	-10	NR_027894	68161	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.075000	0.626866	
mm_103661.1	chr11	78984869	78985069	-	1	NA	NA	NA	-45	NM_010708	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.005000	0.557214	
mm_66496.1	chr7	45061571	45061771	-	1	NA	NA	NA	-19	NM_022999	65116	Mm.379098	NM_022999	ENSMUSG00000007837	Prrg2	1600014G02Rik|2510041M06Rik|N4WBP1	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	protein-coding	0.025000	0.626866	
mm_159754.1	chr5	87885745	87885945	+	1	NA	NA	NA	150	NM_027128	69592	Mm.389652	NM_027128	ENSMUSG00000009580	Odam	2310011G06Rik|APIN	odontogenic, ameloblast asssociated	protein-coding	0.020000	0.388060	
mm_12925.1	chr2	85037157	85037357	+	1	NA	NA	NA	137	NM_182990	20833	Mm.219793	NM_182990	ENSMUSG00000027067	Ssrp1	C81323|Hmg1-rs1|Hmgi-rs3|Hmgox|T160	structure specific recognition protein 1	protein-coding	0.100000	0.706468	
mm_118612.1	chr14	21020590	21020790	+	1	NA	NA	NA	31752	NM_018829	55946	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.030000	0.547264	
mm_53340.1	chr6	129238325	129238525	+	1	NA	NA	NA	57	NR_040268	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.030000	0.522388	
mm_126951.1	chr15	92161230	92161430	+	1	NA	NA	NA	-27	NM_001159647	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.015000	0.447761	
mm_15523.1	chr2	158381288	158381488	+	1	NA	NA	NA	5750	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.010000	0.507463	
mm_93045.1	chr10	88479389	88479589	-	1	NA	NA	NA	19902	NM_011517	20962	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	0.000000	0.278607	
mm_120485.1	chr14	65976812	65977012	+	1	NA	NA	NA	8429	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.020000	0.557214	
mm_145967.1	chr18	67800475	67800675	+	1	NA	NA	NA	468	NM_027556	70799	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	0.020000	0.467662	
mm_77574.1	chr8	123432530	123432730	-	1	NA	NA	NA	-10326	NM_001253784	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.050000	0.592040	
mm_884.1	chr1	52630625	52630825	+	1	NA	NA	NA	20	NM_001142647	227094	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	0.100000	0.731343	
mm_114190.1	chr13	55727264	55727464	+	1	NA	NA	NA	-4	NM_028281	72562	Mm.28145	NM_028281	ENSMUSG00000021496	Pcbd2	2700061N24Rik|Dcoh2|Dcohm	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 2	protein-coding	0.155000	0.786070	
mm_126671.1	chr15	84412571	84412771	+	1	NA	NA	NA	33939	NM_001347543	72301	Mm.275387	NM_001163145	ENSMUSG00000062760	1810041L15Rik	Kiaa1644	RIKEN cDNA 1810041L15 gene	protein-coding	0.015000	0.626866	
mm_88747.1	chr10	80292325	80292525	+	1	NA	NA	NA	-6	NM_009091	20054	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	0.110000	0.641791	
mm_54343.1	chr6	30669400	30669600	-	1	NA	NA	NA	24249	NM_031998	83922	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	0.020000	0.527363	
mm_77623.1	chr8	123953673	123953873	-	1	NA	NA	NA	-4508	NM_172288	234865	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	0.020000	0.472637	
mm_29301.1	chr3	107931600	107931800	-	1	NA	NA	NA	45	NM_026672	68312	Mm.458189	NM_026672	ENSMUSG00000004035	Gstm7	0610005A07Rik|AI894236|Cd203c	glutathione S-transferase, mu 7	protein-coding	0.035000	0.572139	
mm_1928.1	chr1	86110759	86110959	+	1	NA	NA	NA	1111	NM_008311	15559	Mm.439747	NM_008311	ENSMUSG00000026228	Htr2b	5-HT2B|AJ012488|AV377389	5-hydroxytryptamine (serotonin) receptor 2B	protein-coding	0.010000	0.437811	
mm_93464.1	chr10	110897959	110898159	-	1	NA	NA	NA	-1552	NR_045979	75630	Mm.392786	NR_045979	ENSMUSG00000101801	1700020G17Rik	4930480D05Rik	RIKEN cDNA 1700020G17 gene	ncRNA	0.005000	0.512438	
mm_133794.1	chr16	95278416	95278616	+	1	NA	NA	NA	20958	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.010000	0.497512	
mm_12884.1	chr2	84738037	84738237	+	1	NA	NA	NA	3041	NR_029544	387149		NR_029544	ENSMUSG00000065484	Mir130a	Mirn130|Mirn130a|mir-130a	microRNA 130a	ncRNA	0.005000	0.432836	
mm_54736.1	chr6	40940874	40941074	-	1	NA	NA	NA	-417	NM_028550	73481	Mm.333010	NM_028550	ENSMUSG00000029883	1700074P13Rik	AV047902|Tryx5	RIKEN cDNA 1700074P13 gene	protein-coding	0.025000	0.497512	
mm_165408.1	chr2	143696557	143696757	+	1	NA	NA	NA	92529	NR_040625	378775	Mm.441313	NR_040625	ENSMUSG00000087115	Pcsk2os2	9430032N09Rik|Gm12360|OTTMUSG00000006467	proprotein convertase subtilisin/kexin type 2, opposite strand 2	ncRNA	0.020000	0.467662	
mm_113418.1	chr13	34037498	34037698	+	1	NA	NA	NA	-43	NM_026512	68021	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0.080000	0.641791	
mm_37320.1	chr4	119383708	119383908	-	1	NA	NA	NA	26	NM_028506	73332	Mm.425204	NM_028506	ENSMUSG00000028637	Ccdc30	1700001O02Rik|1700041C02Rik|1700111D19Rik|4930445I03Rik	coiled-coil domain containing 30	protein-coding	0.015000	0.532338	
mm_142019.1	chr17	35201041	35201241	-	1	NA	NA	NA	866	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.010000	0.527363	
mm_13975.1	chr2	121437527	121437727	+	1	NA	NA	NA	4974	NM_145973	269344	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	0.010000	0.358209	
mm_78979.1	chr9	45371619	45371819	+	1	NA	NA	NA	1534	NM_022004	59095	Mm.208287	NM_022004	ENSMUSG00000066705	Fxyd6	0610030I18Rik|Php	FXYD domain-containing ion transport regulator 6	protein-coding	0.010000	0.457711	
mm_67975.1	chr7	100656804	100657004	-	1	NA	NA	NA	61	NM_001163187	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.015000	0.587065	
mm_169223.1	chr13	66802697	66802897	+	1	NA	NA	NA	102553	NM_026219	67530	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	0.000000	0.472637	
mm_154356.1	chrM	6089	6289	+	1	NA	NA	NA	NA	NA									0.025000	0.373134	-57(GGCTATATAGGA,-,0.00)
mm_422.1	chr1	34443777	34443977	+	1	NA	NA	NA	4048	NM_178601	27993	Mm.289667	NM_178601	ENSMUSG00000026127	Imp4	AA409888|AV031295|D1Wsu40e	IMP4, U3 small nucleolar ribonucleoprotein	protein-coding	0.030000	0.582090	
mm_74330.1	chr8	126971137	126971337	+	1	NA	NA	NA	-158	NM_172762	52202	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	0.060000	0.587065	
mm_112617.1	chr13	15485350	15485550	+	1	NA	NA	NA	21727	NM_008130	14634	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0.000000	0.278607	-69(TTTTTTATAGAG,+,0.00),-67(TTTTATAGAGCC,+,0.00)
mm_121940.1	chr14	24004866	24005066	-	1	NA	NA	NA	-25	NR_131107	78019	Mm.243845	NR_131107		4930519K11Rik	-	RIKEN cDNA 4930519K11 gene	ncRNA	0.110000	0.731343	
mm_141973.1	chr17	35157941	35158141	-	1	NA	NA	NA	6836	NM_001199044	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.020000	0.636816	
mm_31249.1	chr4	44967669	44967869	+	1	NA	NA	NA	-13625	NM_080289	76238	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0.005000	0.537313	
mm_62846.1	chr7	114297438	114297638	+	1	NA	NA	NA	-21422	NM_011965	26440	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.005000	0.482587	-35(CACTATATAAGC,-,0.00)
mm_121716.1	chr14	16249582	16249782	-	1	NA	NA	NA	126	NM_027695	71147	Mm.197960	NM_027695	ENSMUSG00000021786	Oxsm	4933425A18Rik|C80494	3-oxoacyl-ACP synthase, mitochondrial	protein-coding	0.055000	0.547264	
mm_81097.1	chr9	106374327	106374527	+	1	NA	NA	NA	5795	NM_153459	235584	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.000000	0.323383	
mm_94914.1	chr11	29460865	29461065	+	1	NA	NA	NA	54068	NM_026465	67939	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0.030000	0.402985	
mm_127584.1	chr15	102326315	102326515	+	1	NA	NA	NA	299	NM_027044	56612	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	0.055000	0.601990	
mm_128750.1	chr15	64382982	64383182	-	1	NA	NA	NA	-163	NM_010026	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.030000	0.606965	
mm_87080.1	chr10	29313093	29313293	+	1	NA	NA	NA	27	NM_001110195	52665	Mm.28930	NM_025855	ENSMUSG00000019883	Echdc1	1700028A24Rik|AI314462|AI930038|D10Ertd667e|MMCD	enoyl Coenzyme A hydratase domain containing 1	protein-coding	0.060000	0.616915	
mm_12055.1	chr2	59297310	59297510	+	1	NA	NA	NA	89272	NR_040510	76676	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.000000	0.343284	
mm_126410.1	chr15	80256243	80256443	+	1	NA	NA	NA	1159	NM_009716	11911	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	0.035000	0.527363	
mm_90118.1	chr10	117277984	117278184	+	1	NA	NA	NA	4188	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.040000	0.512438	
mm_16668.1	chr2	6721914	6722114	-	1	NA	NA	NA	-352	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.010000	0.467662	
mm_149968.1	chr19	29047458	29047658	+	1	NA	NA	NA	75	NR_028360	67329	Mm.394933	NR_028360		1700018L02Rik	-	RIKEN cDNA 1700018L02 gene	ncRNA	0.100000	0.681592	
mm_106376.1	chr11	118418932	118419132	-	1	NA	NA	NA	86	NM_001025617	76025	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	0.110000	0.716418	
mm_62759.1	chr7	112082378	112082578	+	1	NA	NA	NA	58972	NM_177249	74996	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	0.005000	0.422886	
mm_98331.1	chr11	90638331	90638531	+	1	NA	NA	NA	247	NM_199008	69802	Mm.151940	NM_199008	ENSMUSG00000020544	Cox11	2010004I09Rik	cytochrome c oxidase assembly protein 11	protein-coding	0.150000	0.761194	
mm_85396.1	chr9	103304967	103305167	-	1	NA	NA	NA	-260	NM_176979	235559	Mm.259893	NM_176979	ENSMUSG00000032555	Topbp1	1110031N14Rik|2810429C13Rik|AI256758|D430026L04Rik|mKIAA0259	topoisomerase (DNA) II binding protein 1	protein-coding	0.110000	0.676617	
mm_93146.1	chr10	92290497	92290697	-	1	NA	NA	NA	84776	NR_046027	627800	Mm.391417	NR_046027	ENSMUSG00000098040	Gm20757	-	predicted gene, 20757	ncRNA	0.005000	0.472637	
mm_98321.1	chr11	90249485	90249685	+	1	NA	NA	NA	109	NM_026178	67468	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.105000	0.761194	
mm_129808.1	chr15	82987783	82987983	-	1	NA	NA	NA	-28587	NR_037241	100526477		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	0.070000	0.626866	
mm_140220.1	chr17	83856843	83857043	+	1	NA	NA	NA	-10153	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.015000	0.422886	
mm_92039.1	chr10	62494730	62494930	-	1	NA	NA	NA	-8025	NM_133672	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.015000	0.388060	
mm_101454.1	chr11	30242953	30243153	-	1	NA	NA	NA	-23281	NM_175836	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.000000	0.338308	
mm_103776.1	chr11	82751415	82751615	-	1	NA	NA	NA	12806	NM_009839	12467	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0.030000	0.482587	
mm_42702.1	chr5	119959128	119959328	+	1	NA	NA	NA	124565	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.035000	0.567164	
mm_172568.1	chr8	111310144	111310344	-	1	NA	NA	NA	-10022	NM_146218	234736	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	0.060000	0.532338	
mm_150785.1	chr19	44296750	44296950	+	1	NA	NA	NA	3174	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.015000	0.537313	
mm_33389.1	chr4	129811095	129811295	+	1	NA	NA	NA	-9284	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.025000	0.507463	
mm_15961.1	chr2	166012840	166013040	+	1	NA	NA	NA	20303	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.020000	0.343284	
mm_127891.1	chr15	9155257	9155457	-	1	NA	NA	NA	68	NM_001285980	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.015000	0.522388	-100(CTGTTTAAAAGG,-,0.00)
mm_140433.1	chr17	88190915	88191115	+	1	NA	NA	NA	65503	NM_001190356	225058	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.015000	0.472637	
mm_38427.1	chr4	139291136	139291336	-	1	NA	NA	NA	19464	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.050000	0.522388	
mm_163278.1	chr11	116023970	116024170	-	1	NA	NA	NA	434	NM_008211	15081	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0.095000	0.701493	
mm_149306.1	chr19	10735171	10735371	+	1	NA	NA	NA	3703	NM_007650	12507	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	0.005000	0.492537	
mm_27733.1	chr3	69044892	69045092	-	1	NA	NA	NA	-250	NM_025863	66949	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.090000	0.676617	
mm_83156.1	chr9	40465490	40465690	-	1	NA	NA	NA	-9826	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.020000	0.477612	-31(TCATTTAAAGCG,+,0.00)
mm_99624.1	chr11	104685608	104685808	+	1	NA	NA	NA	77708	NM_016780	16416	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding	0.070000	0.636816	-37(GCCCTTATGAGG,-,0.00)
mm_56435.1	chr6	97381012	97381212	-	1	NA	NA	NA	78174	NM_001346639	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.000000	0.427861	
mm_60859.1	chr7	45872772	45872972	+	1	NA	NA	NA	32	NM_133950	68137	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	0.055000	0.691542	
mm_132471.1	chr16	36708135	36708335	+	1	NA	NA	NA	14257	NM_001285791	106347	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.010000	0.492537	
mm_65678.1	chr7	28318839	28319039	-	1	NA	NA	NA	-6893	NM_025616	66525	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	0.040000	0.582090	12(GAGTCTAAAGGG,-,0.00)
mm_73374.1	chr8	105623332	105623532	+	1	NA	NA	NA	7966	NR_035492	100316712		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0.020000	0.522388	
mm_141166.1	chr17	26532516	26532716	-	1	NA	NA	NA	-24144	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.000000	0.532338	
mm_49639.1	chr6	30805091	30805291	+	1	NA	NA	NA	63892	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.467662	
mm_132531.1	chr16	37868045	37868245	+	1	NA	NA	NA	-255	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.110000	0.731343	15(CACTATAAAGGG,-,0.00)
mm_22674.1	chr3	14887302	14887502	+	1	NA	NA	NA	976	NM_009801	12349	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0.010000	0.477612	
mm_106727.1	chr12	3873040	3873240	+	1	NA	NA	NA	-10896	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.000000	0.567164	
mm_74878.1	chr8	25067828	25068028	-	1	NA	NA	NA	-28966	NM_001081187	330723	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0.025000	0.582090	
mm_53480.1	chr6	134948771	134948971	+	1	NA	NA	NA	19779	NR_037955	381822	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	0.020000	0.462687	
mm_148281.1	chr18	82525777	82525977	-	1	NA	NA	NA	-28586	NM_001025256	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.020000	0.512438	
mm_81469.1	chr9	109931376	109931576	+	1	NA	NA	NA	-298	NM_001205331	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.085000	0.676617	
mm_120355.1	chr14	64071935	64072135	+	1	NA	NA	NA	13354	NM_001081063	71037	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	0.005000	0.562189	-34(GTGTATAAAAGG,-,0.00)
mm_85805.1	chr9	110282566	110282766	-	1	NA	NA	NA	1379	NR_105744	102465959		NR_105744	ENSMUSG00000098973	Mir6236	Gm27547|mmu-mir-6236	microRNA 6236	ncRNA	0.015000	0.452736	
mm_113915.1	chr13	49504798	49504998	+	1	NA	NA	NA	88	NM_001012324	407800	Mm.386931	NM_001012324	ENSMUSG00000043631	Ecm2	9030618O22Rik|BC065151|tenonectin	extracellular matrix protein 2, female organ and adipocyte specific	protein-coding	0.010000	0.358209	22(GTTTTTAAAGAA,+,0.00)
mm_3516.1	chr1	150107359	150107559	+	1	NA	NA	NA	7428	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.000000	0.293532	
mm_163317.1	chr12	7351781	7351981	+	1	NA	NA	NA	28449	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA	0.000000	0.353234	-31(GCTTTTATATGC,+,0.00)
mm_73912.1	chr8	119666148	119666348	+	1	NA	NA	NA	-117	NM_023395	67866	Mm.87599	NM_023395	ENSMUSG00000023336	Wfdc1	2310058A03Rik|ps20	WAP four-disulfide core domain 1	protein-coding	0.025000	0.601990	
mm_78655.1	chr9	40455207	40455407	+	1	NA	NA	NA	457	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.055000	0.621891	
mm_7723.1	chr1	130661559	130661759	-	1	NA	NA	NA	-41	NM_007576	12269	Mm.306720	NM_007576	ENSMUSG00000026405	C4bp	AI195242|C4bpa	complement component 4 binding protein	protein-coding	0.015000	0.437811	
mm_98335.1	chr11	90675934	90676134	+	1	NA	NA	NA	11567	NM_028011	71943	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	0.000000	0.472637	
mm_17404.1	chr2	27246628	27246828	-	1	NA	NA	NA	575	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.005000	0.507463	
mm_88126.1	chr10	69248554	69248754	+	1	NA	NA	NA	35460	NM_001252638	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.040000	0.477612	
mm_8559.1	chr1	155244422	155244622	-	1	NA	NA	NA	85819	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.095000	0.721393	
mm_140376.1	chr17	86993657	86993857	+	1	NA	NA	NA	30646	NM_145491	104215	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.010000	0.447761	
mm_72156.1	chr8	72161252	72161452	+	1	NA	NA	NA	152	NM_023126	17274	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	0.095000	0.636816	
mm_57079.1	chr6	122581634	122581834	-	1	NA	NA	NA	20710	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.020000	0.437811	
mm_12712.1	chr2	76692322	76692522	+	1	NA	NA	NA	17107	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.447761	
mm_121065.1	chr14	95528867	95529067	+	1	NA	NA	NA	-352299	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	0.005000	0.388060	87(TTCTTTTAAAAG,-,0.00)
mm_161953.1	chr19	5688988	5689188	+	1	NA	NA	NA	-43	NM_022012	26403	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	0.040000	0.482587	
mm_106848.1	chr12	8007874	8008074	+	1	NA	NA	NA	30297	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.338308	
mm_143732.1	chr17	81388234	81388434	-	1	NA	NA	NA	-323249	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.005000	0.402985	71(CCTTATAGAAAG,+,0.00)
mm_143928.1	chr17	85688865	85689065	-	1	NA	NA	NA	-711	NM_011380	20472	Mm.5039	NM_011380	ENSMUSG00000024134	Six2	-	sine oculis-related homeobox 2	protein-coding	0.035000	0.592040	-34(AGCTAGAAAAGC,-,0.00)
mm_38082.1	chr4	134128639	134128839	-	1	NA	NA	NA	14	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.095000	0.686567	
mm_43855.1	chr5	143403751	143403951	+	1	NA	NA	NA	31	NM_025841	66913	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	0.160000	0.766169	-100(GCCTTTAAGGGG,+,0.00),-100(GCCTTTAAGGGG,-,0.00),-99(CCTTTAAGGGGC,+,0.00)
mm_156064.1	chrX	109160486	109160686	+	1	NA	NA	NA	-36170	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.005000	0.388060	
mm_111335.1	chr12	86834489	86834689	-	1	NA	NA	NA	50225	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.010000	0.542289	
mm_138112.1	chr17	34135526	34135726	+	1	NA	NA	NA	-9790	NM_010388	15000	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0.035000	0.527363	
mm_82469.1	chr9	16252128	16252328	-	1	NA	NA	NA	126003	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.000000	0.452736	
mm_147214.1	chr18	37969662	37969862	-	1	NA	NA	NA	-31	NM_175684	319262	Mm.285060	NM_175684	ENSMUSG00000038524	Fchsd1	A030002D08Rik	FCH and double SH3 domains 1	protein-coding	0.090000	0.656716	66(GCCCAGAAAAAG,-,0.00)
mm_96165.1	chr11	61487957	61488157	+	1	NA	NA	NA	2613	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.030000	0.582090	
mm_82093.1	chr9	123056333	123056533	+	1	NA	NA	NA	21692	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.035000	0.552239	
mm_89050.1	chr10	82866561	82866761	+	1	NA	NA	NA	35	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.040000	0.562189	
mm_117067.1	chr13	58911912	58912112	-	1	NA	NA	NA	104315	NM_001025074	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.010000	0.552239	
mm_172658.1	chr8	40566807	40567007	+	1	NA	NA	NA	-51060	NM_001271542	18983	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0.020000	0.487562	
mm_170638.1	chr19	8966742	8966942	-	1	NA	NA	NA	-199	NM_026007	67160	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	0.035000	0.542289	
mm_47929.1	chr5	135063956	135064156	-	1	NA	NA	NA	-150	NM_025362	66114	Mm.178012	NM_025362	ENSMUSG00000061118	Dnajc30	1300007M11Rik|Wbscr18	DnaJ heat shock protein family (Hsp40) member C30	protein-coding	0.095000	0.611940	
mm_98727.1	chr11	96351803	96352003	+	1	NA	NA	NA	271	NM_134032	103889	Mm.281153	NM_134032	ENSMUSG00000075588	Hoxb2	AI894218|Hox-2.8|Hoxbes2	homeobox B2	protein-coding	0.035000	0.507463	-65(GGGTTTATAAAC,-,0.00)
mm_76338.1	chr8	84721584	84721784	-	1	NA	NA	NA	20227	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.045000	0.592040	
mm_7399.1	chr1	118459165	118459365	-	1	NA	NA	NA	0	NR_027901	68204	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.065000	0.587065	
mm_105295.1	chr11	102478426	102478626	-	1	NA	NA	NA	-8643	NM_010575	16399	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0.015000	0.552239	
mm_93802.1	chr10	120898900	120899100	-	1	NA	NA	NA	-29	NM_177092	320183	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	0.130000	0.721393	
mm_130104.1	chr15	89429556	89429756	-	1	NA	NA	NA	271	NR_037154	12651	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	0.095000	0.661692	
mm_49406.1	chr6	28475011	28475211	+	1	NA	NA	NA	-5237	NM_019776	56463	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.010000	0.383085	-58(TTTTTTAAAGGG,+,0.00)
mm_134799.1	chr16	24296106	24296306	-	1	NA	NA	NA	-97144	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.000000	0.462687	
mm_33412.1	chr4	129906098	129906298	+	1	NA	NA	NA	-28	NR_045190	319894	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	0.040000	0.567164	
mm_150475.1	chr19	38836585	38836785	+	1	NA	NA	NA	106	NM_145952	209478	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	0.120000	0.761194	
mm_68535.1	chr7	113369205	113369405	-	1	NA	NA	NA	34	NM_133700	68815	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0.090000	0.676617	
mm_50519.1	chr6	49042684	49042884	+	1	NA	NA	NA	6266	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.025000	0.457711	
mm_135061.1	chr16	34081710	34081910	-	1	NA	NA	NA	-114807	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.045000	0.562189	
mm_128145.1	chr15	31530987	31531187	-	1	NA	NA	NA	-50	NM_172606	223455	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0.190000	0.796020	
mm_156859.1	chrX	164402021	164402221	+	1	NA	NA	NA	-17666	NM_011081	18700	Mm.3781	NM_011081	ENSMUSG00000031381	Piga	AI194334|Pig-a	phosphatidylinositol glycan anchor biosynthesis, class A	protein-coding	0.005000	0.512438	
mm_135294.1	chr16	38562634	38562834	-	1	NA	NA	NA	-80	NM_001205287	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.090000	0.616915	
mm_143593.1	chr17	74527821	74528021	-	1	NA	NA	NA	-374	NM_007566	12211	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.095000	0.701493	
mm_146806.1	chr18	20745821	20746021	-	1	NA	NA	NA	483	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.165000	0.771144	
mm_14006.1	chr2	122028492	122028692	+	1	NA	NA	NA	9	NM_001256055	100042807	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	ENSMUSG00000043424|Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	0.135000	0.761194	
mm_23177.1	chr3	40792550	40792750	+	1	NA	NA	NA	-7301	NM_173169	20873	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo-like kinase 4	protein-coding	0.000000	0.398010	
mm_103056.1	chr11	69818384	69818584	-	1	NA	NA	NA	-44	NM_175368	108803	Mm.73263	NM_175368	ENSMUSG00000044084	4933402P03Rik	-	RIKEN cDNA 4933402P03 gene	protein-coding	0.005000	0.522388	
mm_146585.1	chr18	7868993	7869193	-	1	NA	NA	NA	-104	NM_001146298	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.135000	0.711443	
mm_49488.1	chr6	29540880	29541080	+	1	NA	NA	NA	11698	NM_001252382	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.000000	0.368159	
mm_67672.1	chr7	88299446	88299646	-	1	NA	NA	NA	21461	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.010000	0.442786	13(CCTTATATGCAG,+,0.00)
mm_151991.1	chr19	5849909	5850109	-	1	NA	NA	NA	-4529	NR_003513	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.020000	0.582090	88(TCCTTTTAATGC,-,0.00)
mm_77358.1	chr8	119635424	119635624	-	1	NA	NA	NA	156	NM_025734	66733	Mm.358699	NM_025734	ENSMUSG00000045246	Kcng4	4921535I01Rik|AW049024|KV6.3|KV6.4	potassium voltage-gated channel, subfamily G, member 4	protein-coding	0.025000	0.577114	
mm_83650.1	chr9	49505450	49505650	-	1	NA	NA	NA	-12738	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.020000	0.507463	
mm_34195.1	chr4	140702127	140702327	+	1	NA	NA	NA	754	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.165000	0.800995	
mm_126674.1	chr15	84615971	84616171	+	1	NA	NA	NA	-47135	NM_001346662	109270	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0.015000	0.517413	
mm_124811.1	chr15	8967873	8968073	+	1	NA	NA	NA	24	NM_198024	223332	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0.015000	0.517413	
mm_158698.1	chrX	162018868	162019068	-	1	NA	NA	NA	140473	NM_001081052	195727	Mm.336313	NM_001081052	ENSMUSG00000059493	Nhs	Gm389|Gm48|Nhs1|Xcat	Nance-Horan syndrome (human)	protein-coding	0.010000	0.467662	
mm_32721.1	chr4	116303753	116303953	+	1	NA	NA	NA	81939	NM_181585	18710	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55pik	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	protein-coding	0.005000	0.437811	73(GCTTTTCTAGAG,+,0.00)
mm_162739.1	chr10	56388765	56388965	+	1	NA	NA	NA	11565	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.025000	0.427861	
mm_31729.1	chr4	62966057	62966257	+	1	NA	NA	NA	583	NM_028326	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.015000	0.368159	-6(TTTTTTAAGGCC,+,0.00)
mm_61558.1	chr7	79499988	79500188	+	1	NA	NA	NA	62	NR_040313	101694	Mm.41661	NR_040311	ENSMUSG00000097023	Mir9-3hg	AI854517	Mir9-3 host gene	ncRNA	0.150000	0.781095	
mm_105936.1	chr11	115163032	115163232	-	1	NA	NA	NA	-209	NM_012030	26941	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0.070000	0.656716	
mm_125447.1	chr15	47539888	47540088	+	1	NA	NA	NA	916683	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0.045000	0.512438	
mm_12734.1	chr2	78869261	78869461	+	1	NA	NA	NA	314	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.135000	0.800995	
mm_171914.1	chr5	55791679	55791879	-	1	NA	NA	NA	1441787	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA	0.005000	0.457711	-35(CACTTTATAAGC,-,0.00),-33(CTTTATAAGCAC,+,0.00)
mm_74723.1	chr8	17466740	17466940	-	1	NA	NA	NA	68545	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.000000	0.353234	
mm_62511.1	chr7	102210337	102210537	+	1	NA	NA	NA	102	NM_001291358	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.060000	0.671642	
mm_113359.1	chr13	32860915	32861115	+	1	NA	NA	NA	-9830	NM_025429	66222	Mm.20144	NM_025429	ENSMUSG00000044734	Serpinb1a	1190005M04Rik|AI325983|EI|EIA|ELANH2|LEI|M/NEI|MNEI|PI2	serine (or cysteine) peptidase inhibitor, clade B, member 1a	protein-coding	0.010000	0.467662	
mm_111605.1	chr12	102398229	102398429	-	1	NA	NA	NA	41484	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.025000	0.532338	
mm_6327.1	chr1	71612481	71612681	-	1	NA	NA	NA	40653	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.055000	0.532338	
mm_61490.1	chr7	75710227	75710427	+	1	NA	NA	NA	-138011	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.010000	0.417910	
mm_134699.1	chr16	22657072	22657272	-	1	NA	NA	NA	59	NM_138650	110197	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0.075000	0.711443	
mm_56611.1	chr6	112490695	112490895	-	1	NA	NA	NA	-987	NM_001081147	18430	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding	0.040000	0.606965	
mm_130947.1	chr15	103252722	103252922	-	1	NA	NA	NA	-12	NM_001302339	18022	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.010000	0.502488	
mm_96531.1	chr11	68556214	68556414	+	1	NA	NA	NA	128	NM_146004	215723	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	0.070000	0.631841	
mm_161553.1	chr16	11313710	11313910	+	1	NA	NA	NA	1	NM_011608	21935	Mm.12935	NM_011608	ENSMUSG00000022496	Tnfrsf17	BCM|BCMA|Tnfrsf13|Tnfrsf13a	tumor necrosis factor receptor superfamily, member 17	protein-coding	0.025000	0.507463	
mm_172918.1	chr9	65579922	65580122	-	1	NA	NA	NA	65	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.120000	0.731343	
mm_141485.1	chr17	31260410	31260610	-	1	NA	NA	NA	16846	NM_025290	22092	Mm.12743	NM_025290	ENSMUSG00000024033	Rsph1	MCA|Tsga2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding	0.000000	0.442786	
mm_124863.1	chr15	10177162	10177362	+	1	NA	NA	NA	24	NM_011169	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.020000	0.497512	
mm_164422.1	chr16	45030158	45030358	-	1	NA	NA	NA	-63795	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.010000	0.497512	
mm_144601.1	chr18	32385466	32385666	+	1	NA	NA	NA	-7282	NR_045403	402767	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.010000	0.522388	
mm_49940.1	chr6	39871347	39871547	+	1	NA	NA	NA	-60511	NM_001010930	14548	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.065000	0.542289	
mm_84251.1	chr9	62453584	62453784	-	1	NA	NA	NA	83360	NM_175484	235431	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.010000	0.537313	
mm_137416.1	chr17	26123434	26123634	+	1	NA	NA	NA	31	NM_024227	68611	Mm.273102	NM_024227	ENSMUSG00000024181	Mrpl28	1110015G04Rik|L28mt|MAAT1|MRP-L28|p15	mitochondrial ribosomal protein L28	protein-coding	0.110000	0.641791	
mm_41611.1	chr5	96793296	96793496	+	1	NA	NA	NA	11	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.040000	0.646766	
mm_162685.1	chr10	14596446	14596646	+	1	NA	NA	NA	-51510	NM_001002268	215798	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.005000	0.383085	
mm_155822.1	chrX	100656349	100656549	+	1	NA	NA	NA	30384	NM_008446	16571	Mm.383091	NM_008446	ENSMUSG00000034311	Kif4	AI323435|D330050K22Rik|Kns4	kinesin family member 4	protein-coding	0.010000	0.348259	
mm_155368.1	chrX	71214974	71215174	+	1	NA	NA	NA	-8	NM_019926	17772	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	0.075000	0.671642	
mm_133951.1	chr16	3976472	3976672	-	1	NA	NA	NA	60	NM_175547	268857	Mm.215994	NM_175547	ENSMUSG00000049871	Nlrc3	CLR16.2|D230007K08Rik|mFLJ00348	NLR family, CARD domain containing 3	protein-coding	0.010000	0.542289	-90(AGCTTTTAAAAC,-,0.00),-89(GCTTTTAAAACT,+,0.00)
mm_5054.1	chr1	194976267	194976467	+	1	NA	NA	NA	592	NR_033564	320400	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.160000	0.721393	
mm_35711.1	chr4	44169168	44169368	-	1	NA	NA	NA	-985	NM_001038993	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.000000	0.378109	
mm_20688.1	chr2	132698414	132698614	-	1	NA	NA	NA	8231	NM_028637	73747	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0.015000	0.512438	
mm_114350.1	chr13	60939365	60939565	+	1	NA	NA	NA	2470	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding	0.000000	0.422886	
mm_112124.1	chr12	112917532	112917732	-	1	NA	NA	NA	2909	NR_105906	102465567		NR_105906	ENSMUSG00000098338	Mir6941	Gm27923|mmu-mir-6941	microRNA 6941	ncRNA	0.025000	0.616915	-34(GCCTTTAAGGAA,+,0.00)
mm_33953.1	chr4	137453228	137453428	+	1	NA	NA	NA	32	NM_027063	69380	Mm.272519	NM_027063	ENSMUSG00000041399	1700013G24Rik	AI507018	RIKEN cDNA 1700013G24 gene	protein-coding	0.010000	0.562189	
mm_79356.1	chr9	54262241	54262441	+	1	NA	NA	NA	-24145	NM_177350	235379	Mm.123549	NM_177350	ENSMUSG00000046167	Gldn	CRG-L2|Clom|Colm|Crgl2|Crlg2	gliomedin	protein-coding	0.000000	0.467662	
mm_62787.1	chr7	112679220	112679420	+	1	NA	NA	NA	0	NM_001166584	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.155000	0.721393	
mm_100809.1	chr11	5098655	5098855	-	1	NA	NA	NA	333	NM_001283062	14030	Mm.142822	NM_007968	ENSMUSG00000009079	Ewsr1	Ews|Ewsh	Ewing sarcoma breakpoint region 1	protein-coding	0.105000	0.721393	
mm_136445.1	chr16	94918228	94918428	-	1	NA	NA	NA	-61638	NM_001025590	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.015000	0.467662	
mm_138092.1	chr17	34039047	34039247	+	1	NA	NA	NA	9	NM_001317722	12815	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.040000	0.557214	
mm_49864.1	chr6	38551463	38551663	+	1	NA	NA	NA	229	NM_001170848	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.105000	0.676617	
mm_32268.1	chr4	102624860	102625060	+	1	NA	NA	NA	35117	NM_001177981	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.020000	0.457711	
mm_91871.1	chr10	59576333	59576533	-	1	NA	NA	NA	40259	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.015000	0.467662	41(CCCTTTAAGTCC,+,0.00)
mm_72708.1	chr8	84986249	84986449	+	1	NA	NA	NA	-4246	NM_133255	170833	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	0.020000	0.522388	
mm_126567.1	chr15	82197425	82197625	+	1	NA	NA	NA	-597	NR_029804	723897		NR_029804	ENSMUSG00000065465	Mir33	Mirn33|mir-33|mmu-mir-33	microRNA 33	ncRNA	0.025000	0.572139	
mm_139570.1	chr17	57032124	57032324	+	1	NA	NA	NA	-717	NM_010613	16549	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0.040000	0.587065	
mm_34786.1	chr4	154170688	154170888	+	1	NA	NA	NA	75	NM_001162977	230971	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	0.125000	0.736318	
mm_104209.1	chr11	88235147	88235347	-	1	NA	NA	NA	30859	NM_001291271	64656	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	0.000000	0.442786	
mm_140259.1	chr17	84576191	84576391	+	1	NA	NA	NA	-50208	NM_172256	213575	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0.000000	0.388060	
mm_154781.1	chrX	13041718	13041918	+	1	NA	NA	NA	-197	NR_038158	70489	Mm.383563	NR_038158	ENSMUSG00000087424	5730405O15Rik	-	RIKEN cDNA 5730405O15 gene	ncRNA	0.100000	0.686567	
mm_68094.1	chr7	101933693	101933893	-	1	NA	NA	NA	64	NM_027053	69358	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0.060000	0.552239	
mm_15338.1	chr2	155979459	155979659	+	1	NA	NA	NA	23001	NM_177217	16328	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	0.015000	0.537313	
mm_151617.1	chr19	3903565	3903765	-	1	NA	NA	NA	1565	NM_016921	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.055000	0.646766	
mm_165733.1	chr3	106775789	106775989	-	1	NA	NA	NA	14260	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.005000	0.328358	
mm_115672.1	chr13	12615984	12616184	-	1	NA	NA	NA	34311	NR_003568	664862	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik|ENSMUSG00000075118	G protein-coupled receptor 137B, pseudogene	pseudo	0.030000	0.482587	
mm_141807.1	chr17	34549276	34549476	-	1	NA	NA	NA	-14919	NM_010929	18132	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	0.015000	0.487562	
mm_64226.1	chr7	141632417	141632617	+	1	NA	NA	NA	11816	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.015000	0.537313	
mm_128924.1	chr15	73830916	73831116	-	1	NA	NA	NA	8655	NM_001033365	268816	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding	0.010000	0.572139	
mm_149697.1	chr19	21276348	21276548	+	1	NA	NA	NA	4170	NM_009551	22682	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.000000	0.353234	42(GCTTTTATGGGA,+,0.00)
mm_55496.1	chr6	69701238	69701438	-	1	NA	NA	NA	-374164	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.010000	0.373134	-95(GTGTTTATAAGA,-,0.00),-15(CTGTTTTAAAGC,-,0.00)
mm_136651.1	chr17	5926845	5927045	+	1	NA	NA	NA	-14335	NM_001113353	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.025000	0.497512	
mm_25855.1	chr3	129624333	129624533	+	1	NA	NA	NA	92047	NM_130450	170439	Mm.314113	NM_130450	ENSMUSG00000041220	Elovl6	C77826|FAE|LCE	ELOVL family member 6, elongation of long chain fatty acids (yeast)	protein-coding	0.030000	0.492537	
mm_25080.1	chr3	100162460	100162660	+	1	NA	NA	NA	97	NR_104341	14547	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	0.095000	0.651741	
mm_149555.1	chr19	12633241	12633441	+	1	NA	NA	NA	33	NM_145935	107146	Mm.39974	NM_145935	ENSMUSG00000063683	Glyat	A330009E03Rik|ACGNAT|AI195249|AI315345|CAT|GAT	glycine-N-acyltransferase	protein-coding	0.005000	0.447761	
mm_4297.1	chr1	171778519	171778719	+	1	NA	NA	NA	11487	NM_013730	27218	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	0.005000	0.472637	
mm_108362.1	chr12	80791337	80791537	+	1	NA	NA	NA	905	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.015000	0.502488	
mm_31136.1	chr4	43257768	43257968	+	1	NA	NA	NA	-9291	NM_177195	320571	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	0.030000	0.562189	
mm_27136.1	chr3	32408881	32409081	-	1	NA	NA	NA	-27170	NM_008839	18706	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	protein-coding	0.005000	0.462687	
mm_60342.1	chr7	44355822	44356022	+	1	NA	NA	NA	19108	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.005000	0.542289	
mm_83089.1	chr9	40320832	40321032	-	1	NA	NA	NA	-12540	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.010000	0.562189	
mm_114604.1	chr13	75771524	75771724	+	1	NA	NA	NA	64140	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.010000	0.517413	
mm_70046.1	chr7	142577941	142578141	-	1	NA	NA	NA	105	NR_130974	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.030000	0.621891	
mm_125605.1	chr15	60467960	60468160	+	1	NA	NA	NA	-354905	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0.015000	0.358209	
mm_148640.1	chr19	5476035	5476235	+	1	NA	NA	NA	1400	NM_001164352	58859	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	0.040000	0.592040	
mm_1093.1	chr1	59697968	59698168	+	1	NA	NA	NA	6110	NR_028554	100217459		NR_028554		Snord70	MBII-234|snoRNA234	small nucleolar RNA, C/D box 70	snoRNA	0.010000	0.457711	
mm_87569.1	chr10	56380360	56380560	+	1	NA	NA	NA	3160	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.005000	0.263682	
mm_95982.1	chr11	58977495	58977695	+	1	NA	NA	NA	-498	NM_001290988	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.050000	0.507463	
mm_108530.1	chr12	84202810	84203010	+	1	NA	NA	NA	-8895	NM_001163502	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.015000	0.487562	
mm_24765.1	chr3	95499702	95499902	+	1	NA	NA	NA	592	NM_007802	13038	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.015000	0.422886	
mm_116189.1	chr13	31399641	31399841	-	1	NA	NA	NA	-158429	NM_008239	15220	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	0.010000	0.407960	
mm_25577.1	chr3	116859499	116859699	+	1	NA	NA	NA	32	NM_001113478	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.000000	0.457711	
mm_163378.1	chr12	45468367	45468567	+	1	NA	NA	NA	-393984	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.005000	0.398010	
mm_36164.1	chr4	60739798	60739998	-	1	NA	NA	NA	1383	NM_001199995	100039054	Mm.482236	NM_001199995	ENSMUSG00000094793	Mup12	Gm2024	major urinary protein 12	protein-coding	0.015000	0.388060	
mm_166111.1	chr4	148804236	148804436	+	1	NA	NA	NA	-56	NM_001159344	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.105000	0.656716	
mm_108822.1	chr12	95701016	95701216	+	1	NA	NA	NA	8890	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.000000	0.373134	60(GCCCTTAAAGAC,-,0.00),62(CCTTAAAGACCC,+,0.00)
mm_108653.1	chr12	86361022	86361222	+	1	NA	NA	NA	5	NM_001159500	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.015000	0.587065	
mm_168711.1	chr11	99932487	99932687	+	1	NA	NA	NA	-3704	NM_001025244	432602	Mm.246878	NM_001025244	ENSMUSG00000051481	Krtap31-2	OTTMUSG00000002177	keratin associated protein 31-2	protein-coding	0.050000	0.517413	
mm_166742.1	chr6	124779573	124779773	-	1	NA	NA	NA	54	NM_001302555	16977	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	0.040000	0.502488	
mm_150645.1	chr19	41911601	41911801	+	1	NA	NA	NA	-170	NM_023418	18648	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	0.085000	0.611940	
mm_39875.1	chr5	31076987	31077187	+	1	NA	NA	NA	16440	NM_011773	22784	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.035000	0.631841	
mm_11642.1	chr2	34914230	34914430	+	1	NA	NA	NA	-354	NM_028716	74016	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0.100000	0.676617	
mm_57212.1	chr6	122855979	122856179	-	1	NA	NA	NA	78	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.010000	0.497512	
mm_111258.1	chr12	85138617	85138817	-	1	NA	NA	NA	12547	NM_146244	238323	Mm.44829	NM_146244	ENSMUSG00000019235	Rps6kl1	A830084F09Rik|AW046440	ribosomal protein S6 kinase-like 1	protein-coding	0.040000	0.557214	
mm_156597.1	chrX	152273790	152273990	+	1	NA	NA	NA	40663	NM_013668	20591	Mm.142655	NM_013668	ENSMUSG00000025332	Kdm5c	D930009K15Rik|Jarid1c|Smcx|mKIAA0234	lysine (K)-specific demethylase 5C	protein-coding	0.005000	0.333333	
mm_97589.1	chr11	78945784	78945984	+	1	NA	NA	NA	20593	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.562189	
mm_58289.1	chr6	145863627	145863827	-	1	NA	NA	NA	1693	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.085000	0.601990	
mm_106552.1	chr11	120598416	120598616	-	1	NA	NA	NA	-16	NM_001038230	66156	Mm.21645	NM_025389	ENSMUSG00000025135	Anapc11	1110011I19Rik|R75218	anaphase promoting complex subunit 11	protein-coding	0.190000	0.721393	
mm_103442.1	chr11	76015361	76015561	-	1	NA	NA	NA	12321	NM_029658	76566	Mm.34131	NM_029658	ENSMUSG00000020846	Rflnb	1500005K14Rik|Fam101b|RefilinB|cfm	refilin B	protein-coding	0.010000	0.492537	
mm_135247.1	chr16	37539629	37539829	-	1	NA	NA	NA	40	NM_028812	74197	Mm.287795	NM_028812	ENSMUSG00000022828	Gtf2e1	2610024P03Rik|56kDa|AI303800|FE|TFIIE-A	general transcription factor II E, polypeptide 1 (alpha subunit)	protein-coding	0.085000	0.587065	
mm_85345.1	chr9	103208889	103209089	-	1	NA	NA	NA	-6924	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.015000	0.532338	
mm_26715.1	chr3	158006535	158006735	+	1	NA	NA	NA	25119	NM_001093753	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.010000	0.353234	
mm_51561.1	chr6	83523076	83523276	+	1	NA	NA	NA	13075	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.005000	0.512438	
mm_146202.1	chr18	76268347	76268547	+	1	NA	NA	NA	6002	NM_001311070	17126	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0.000000	0.353234	
mm_154450.1	chrM	1940	2140	-	1	NA	NA	NA	NA	NA									0.030000	0.437811	
mm_94640.1	chr11	16914145	16914345	+	1	NA	NA	NA	37037	NR_110421	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.000000	0.437811	
mm_118656.1	chr14	21776683	21776883	+	1	NA	NA	NA	26252	NM_026283	67630	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	0.015000	0.437811	
mm_64604.1	chr7	3228414	3228614	-	1	NA	NA	NA	7741	NR_029645	100049713		NR_029645	ENSMUSG00000077886	Mir295	Mirn295|mir-295|mmu-miR-295	microRNA 295	ncRNA	0.020000	0.577114	
mm_133019.1	chr16	56477749	56477949	+	1	NA	NA	NA	3	NM_001014424	320712	Mm.209236	NM_178790	ENSMUSG00000035258	Abi3bp	5033411B22Rik|AI506287|BG172926|D930038M13Rik|TARSH|eratin	ABI gene family, member 3 (NESH) binding protein	protein-coding	0.020000	0.582090	
mm_3855.1	chr1	160944621	160944821	+	1	NA	NA	NA	-33885	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.000000	0.248756	
mm_72977.1	chr8	92901299	92901499	+	1	NA	NA	NA	4	NM_027112	69543	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	0.020000	0.507463	
mm_156828.1	chrX	164269411	164269611	+	1	NA	NA	NA	80	NM_027153	69656	Mm.293463	NM_027153	ENSMUSG00000031379	Pir	2310042L19Rik|Pirnl	pirin	protein-coding	0.050000	0.592040	
mm_110471.1	chr12	51829670	51829870	-	1	NA	NA	NA	-234	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.195000	0.796020	
mm_152709.1	chr19	17372151	17372351	-	1	NA	NA	NA	593	NM_010265	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.005000	0.383085	
mm_57185.1	chr6	122848735	122848935	-	1	NA	NA	NA	7322	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.020000	0.472637	
mm_156426.1	chrX	140956808	140957008	+	1	NA	NA	NA	-197	NM_001164177	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	0.025000	0.512438	
mm_123791.1	chr14	70443040	70443240	-	1	NA	NA	NA	87	NM_001164082	67065	Mm.20420	NM_025945	ENSMUSG00000000776	Polr3d	2810426M17Rik|44kDa|AI326118|AW489084|BN51T|RPC4|TSBN51	polymerase (RNA) III (DNA directed) polypeptide D	protein-coding	0.095000	0.691542	
mm_129947.1	chr15	84960886	84961086	-	1	NA	NA	NA	-9363	NR_037206	100526461		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0.010000	0.572139	
mm_104765.1	chr11	98479418	98479618	-	1	NA	NA	NA	32684	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.005000	0.323383	
mm_58150.1	chr6	142322916	142323116	-	1	NA	NA	NA	-35	NM_130861	108096	Mm.206599	NM_130861	ENSMUSG00000063975	Slco1a5	Oatp-3|Oatp3|Slc21a7	solute carrier organic anion transporter family, member 1a5	protein-coding	0.015000	0.442786	
mm_40353.1	chr5	46414155	46414355	+	1	NA	NA	NA	-481846	NR_110478	78106	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	0.070000	0.507463	-19(TTATTTAAAAGG,-,0.00)
mm_129964.1	chr15	85581715	85581915	-	1	NA	NA	NA	6	NM_009528	22422	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	0.140000	0.786070	
mm_160823.1	chr11	32300040	32300240	+	1	NA	NA	NA	71	NM_175000	216635	Mm.338482	NM_175000	ENSMUSG00000020295	Hbq1a	A230090E05Rik|Gm876|Hbq1|Hbqt2	hemoglobin, theta 1A	protein-coding	0.050000	0.587065	
mm_114281.1	chr13	58281116	58281316	+	1	NA	NA	NA	-7028	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.015000	0.482587	
mm_9794.1	chr1	181840917	181841117	-	1	NA	NA	NA	1384	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.005000	0.358209	27(TGCTATATAAAA,-,0.00)
mm_70961.1	chr8	26980020	26980220	+	1	NA	NA	NA	2784	NM_001110508	353310	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.050000	0.641791	
mm_90375.1	chr10	127187684	127187884	+	1	NA	NA	NA	2039	NM_001166413	52666	Mm.272230	NM_028027	ENSMUSG00000019467	Arhgef25	2410008H17Rik|D10Ertd610e|GEFT	Rho guanine nucleotide exchange factor (GEF) 25	protein-coding	0.015000	0.522388	86(TCTTATAAAACC,+,0.00)
mm_153424.1	chr19	40730201	40730401	-	1	NA	NA	NA	70531	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.035000	0.557214	
mm_14883.1	chr2	148835112	148835312	+	1	NA	NA	NA	65	NM_009979	13013	Mm.21005	NM_009979	ENSMUSG00000027445	Cst9	M12|cresp|testatin	cystatin 9	protein-coding	0.005000	0.487562	
mm_156917.1	chrX	169097711	169097911	+	1	NA	NA	NA	-15067	NM_001287530	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.015000	0.373134	
mm_68325.1	chr7	106503865	106504065	-	1	NA	NA	NA	-62892	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.313433	
mm_157994.1	chrX	94540152	94540352	-	1	NA	NA	NA	1822	NM_019791	94275	Mm.27578	NM_019791	ENSMUSG00000025151	Maged1	2810433C11Rik|5430405L04Rik|DXBwg1492e|Dlixin|Dlxin-1|Dlxin1|MAGE-D1|NRAGE|mFLJ00163	melanoma antigen, family D, 1	protein-coding	0.010000	0.502488	-96(GCTTTAAGGCCC,+,0.00)
mm_56235.1	chr6	90662160	90662360	-	1	NA	NA	NA	43014	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.005000	0.621891	
mm_94778.1	chr11	21370635	21370835	+	1	NA	NA	NA	-106	NM_139297	216558	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0.095000	0.711443	-32(GCCCATAAATAG,-,0.00),-30(CCATAAATAGCC,+,0.00)
mm_89634.1	chr10	96401000	96401200	+	1	NA	NA	NA	174893	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.020000	0.467662	
mm_29064.1	chr3	103791450	103791650	-	1	NA	NA	NA	11	NR_125731	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.055000	0.582090	
mm_5611.1	chr1	39650771	39650971	-	1	NA	NA	NA	311	NM_170597	263764	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0.075000	0.651741	
mm_150499.1	chr19	39018707	39018907	+	1	NA	NA	NA	11788	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.010000	0.288557	
mm_150580.1	chr19	40659359	40659559	+	1	NA	NA	NA	-311	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.005000	0.338308	18(CTTTTTCAAGGG,+,0.00)
mm_32223.1	chr4	101717722	101717922	+	1	NA	NA	NA	415	NM_010704	16847	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.045000	0.542289	47(CTCCTTTAAAAG,-,0.00),48(TCCTTTAAAAGG,-,0.00),49(CCTTTAAAAGGA,+,0.00)
mm_121091.1	chr14	99301596	99301796	+	1	NA	NA	NA	3005	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.030000	0.542289	
mm_145600.1	chr18	61045176	61045376	+	1	NA	NA	NA	126	NM_008809	18596	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.035000	0.626866	
mm_67009.1	chr7	65364104	65364304	-	1	NA	NA	NA	7040	NM_001163574	21872	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.005000	0.407960	
mm_128203.1	chr15	35938067	35938267	-	1	NA	NA	NA	79	NM_053071	12864	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0.075000	0.582090	
mm_91068.1	chr10	19005586	19005786	-	1	NA	NA	NA	6277	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.015000	0.407960	
mm_57018.1	chr6	121343190	121343390	-	1	NA	NA	NA	214	NM_001347433	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.015000	0.601990	
mm_149937.1	chr19	27216952	27217152	+	1	NA	NA	NA	32	NM_001161420	22359	Mm.4141	NM_013703	ENSMUSG00000024924	Vldlr	AA408956|AI451093|AW047288	very low density lipoprotein receptor	protein-coding	0.125000	0.761194	
mm_31174.1	chr4	43482180	43482380	+	1	NA	NA	NA	1429	NM_019436	54390	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	0.010000	0.542289	53(CCCTAAATGGAG,+,0.00)
mm_29493.1	chr3	115887946	115888146	-	1	NA	NA	NA	13	NR_027894	68161	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.070000	0.646766	
mm_27164.1	chr3	33143110	33143310	-	1	NA	NA	NA	-19	NM_001163516	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.195000	0.815920	
mm_173330.1	chrY	90784086	90784286	+	1	NA	NA	NA	-1256	NR_137282	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.195000	0.825871	
mm_148125.1	chr18	75378154	75378354	-	1	NA	NA	NA	10889	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.010000	0.497512	-33(AGGTATAAAAAC,-,0.00)
mm_92025.1	chr10	62449606	62449806	-	1	NA	NA	NA	-13	NM_181423	338359	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	0.125000	0.736318	
mm_38652.1	chr4	143278807	143279007	-	1	NA	NA	NA	20657	NM_010329	14726	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding	0.015000	0.407960	
mm_124088.1	chr14	78732691	78732891	-	1	NA	NA	NA	-7702	NM_001081336	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.135000	0.776119	
mm_160537.1	chr9	39950531	39950731	-	1	NA	NA	NA	138	NM_146828	258825	Mm.377710	NM_146828	ENSMUSG00000043331	Olfr975	MOR224-2	olfactory receptor 975	protein-coding	0.015000	0.482587	
mm_77220.1	chr8	115695190	115695390	-	1	NA	NA	NA	11604	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.010000	0.447761	
mm_161858.1	chr18	25165668	25165868	-	1	NA	NA	NA	197	NM_001142697	66648	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.005000	0.318408	
mm_107574.1	chr12	44400732	44400932	+	1	NA	NA	NA	71947	NM_001146031	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.010000	0.477612	
mm_125723.1	chr15	73148064	73148264	+	1	NA	NA	NA	36783	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.020000	0.497512	
mm_162507.1	chr1	150366865	150367065	+	1	NA	NA	NA	-20194	NR_040603	75584	Mm.47709	NR_040603	ENSMUSG00000099447	2310030A07Rik	-	RIKEN cDNA 2310030A07 gene	ncRNA	0.000000	0.298507	
mm_141228.1	chr17	27426145	27426345	-	1	NA	NA	NA	68148	NR_106077	102466228		NR_106077	ENSMUSG00000106215	Mir7218	mmu-mir-7218	microRNA 7218	ncRNA	0.010000	0.507463	
mm_131521.1	chr16	17619347	17619547	+	1	NA	NA	NA	93	NM_001164609	77626	Mm.34659	NM_029945	ENSMUSG00000005899	Smpd4	4122402O22Rik|mKIAA1418	sphingomyelin phosphodiesterase 4	protein-coding	0.100000	0.656716	
mm_169462.1	chr1	46562716	46562916	+	1	NA	NA	NA	137298	NM_001310335	100101919	Mm.383402	NM_001310335	ENSMUSG00000101337	Dnah7c	Dnahc7c	dynein, axonemal, heavy chain 7C	protein-coding	0.035000	0.462687	-57(AGTTTTAAAAGG,-,0.00),-56(GTTTTAAAAGGA,+,0.00)
mm_62345.1	chr7	100498251	100498451	+	1	NA	NA	NA	4993	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.010000	0.537313	
mm_144516.1	chr18	24710273	24710473	+	1	NA	NA	NA	1750	NM_001289655	225288	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0.065000	0.606965	
mm_42935.1	chr5	122987496	122987696	+	1	NA	NA	NA	1503	NM_001003953	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.065000	0.666667	
mm_42039.1	chr5	108404840	108405040	+	1	NA	NA	NA	16567	NM_008806	18587	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0.010000	0.467662	
mm_59779.1	chr7	28841516	28841716	+	1	NA	NA	NA	7446	NM_010707	16857	Mm.210336	NM_010707		Lgals6	galectin-6	lectin, galactose binding, soluble 6	protein-coding	0.025000	0.492537	
mm_33931.1	chr4	136889876	136890076	+	1	NA	NA	NA	2938	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.025000	0.567164	
mm_56854.1	chr6	118155243	118155443	-	1	NA	NA	NA	-16203	NM_030165	78752	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0.025000	0.512438	
mm_79975.1	chr9	66713628	66713828	+	1	NA	NA	NA	42	NM_001306148	76459	Mm.277921	NM_178396	ENSMUSG00000032373	Car12	2310047E01Rik|AI314958|CA-XII|Ca12	carbonic anhydrase 12	protein-coding	0.060000	0.611940	
mm_30894.1	chr4	32291678	32291878	+	1	NA	NA	NA	-125657	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.020000	0.507463	
mm_61964.1	chr7	90386947	90387147	+	1	NA	NA	NA	66	NM_001040088	83671	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	0.010000	0.467662	
mm_137831.1	chr17	30747624	30747824	+	1	NA	NA	NA	120788	NM_013811	13417	Mm.426017	NM_013811	ENSMUSG00000033826	Dnah8	ATPase|Dnahc8|Hst6.7b|P1-Loop	dynein, axonemal, heavy chain 8	protein-coding	0.035000	0.487562	
mm_170159.1	chr17	47811824	47812024	-	1	NA	NA	NA	21367	NM_001276391	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.015000	0.457711	
mm_68522.1	chr7	112023959	112024159	-	1	NA	NA	NA	553	NM_177249	74996	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	0.055000	0.557214	
mm_5289.1	chr1	20820150	20820350	-	1	NA	NA	NA	-37	NM_008563	17215	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|p1.m	minichromosome maintenance complex component 3	protein-coding	0.080000	0.572139	
mm_24756.1	chr3	95434422	95434622	+	1	NA	NA	NA	132	NM_001037737	11863	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	0.075000	0.686567	
mm_79539.1	chr9	57910418	57910618	+	1	NA	NA	NA	-468	NM_027086	69459	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0.050000	0.532338	
mm_28729.1	chr3	95735779	95735979	-	1	NA	NA	NA	-906	NR_105981	102466787		NR_105981	ENSMUSG00000098737	Mir7014	Gm27837|mmu-mir-7014	microRNA 7014	ncRNA	0.060000	0.656716	
mm_90472.1	chr10	127849912	127850112	+	1	NA	NA	NA	84	NM_147222	216453	Mm.222953	NM_147222	ENSMUSG00000054052	Rdh19	RDH-S|RDH-S2|Rdhs	retinol dehydrogenase 19	protein-coding	0.010000	0.527363	
mm_76358.1	chr8	84772194	84772394	-	1	NA	NA	NA	2075	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.080000	0.616915	
mm_75995.1	chr8	72443632	72443832	-	1	NA	NA	NA	46	NM_028500	73316	Mm.196315	NM_028500	ENSMUSG00000019732	Calr3	1700031L01Rik|6330586I20Rik|Crt2|cspn	calreticulin 3	protein-coding	0.085000	0.601990	
mm_105845.1	chr11	113684415	113684615	-	1	NA	NA	NA	103	NM_177777	276852	Mm.239566	NM_177777	ENSMUSG00000041623	D11Wsu47e	-	DNA segment, Chr 11, Wayne State University 47, expressed	protein-coding	0.090000	0.601990	
mm_4442.1	chr1	172514034	172514234	+	1	NA	NA	NA	-6996	NM_027972	71870	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	0.035000	0.592040	
mm_56105.1	chr6	87491058	87491258	-	1	NA	NA	NA	5169	NR_104483	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.015000	0.542289	
mm_113519.1	chr13	37803123	37803323	+	1	NA	NA	NA	-22815	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.005000	0.363184	
mm_111684.1	chr12	103425729	103425929	-	1	NA	NA	NA	38	NM_020494	27225	Mm.3935	NM_020494	ENSMUSG00000041645	Ddx24	1700055J08Rik|2510027P10Rik|AI649272	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	protein-coding	0.110000	0.666667	
mm_14866.1	chr2	148798779	148798979	+	1	NA	NA	NA	40	NM_009978	13012	Mm.20435	NM_009978	ENSMUSG00000027442	Cst8	Cres|Cst-rs1	cystatin 8 (cystatin-related epididymal spermatogenic)	protein-coding	0.005000	0.527363	
mm_97897.1	chr11	83404892	83405092	+	1	NA	NA	NA	-5080	NM_001013386	276952	Mm.66275	NM_001013386	ENSMUSG00000020684	Rasl10b	B230331P10Rik|Gm729|VTS58635	RAS-like, family 10, member B	protein-coding	0.005000	0.452736	
mm_104948.1	chr11	100134424	100134624	-	1	NA	NA	NA	1425	NM_008469	16665	Mm.440010	NM_008469	ENSMUSG00000054146	Krt15	AI528832|K15|Krt1-15	keratin 15	protein-coding	0.035000	0.552239	
mm_30333.1	chr3	151732134	151732334	-	1	NA	NA	NA	17725	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.005000	0.363184	
mm_78475.1	chr9	32681360	32681560	+	1	NA	NA	NA	-14582	NM_011808	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.010000	0.412935	
mm_80395.1	chr9	76014887	76015087	+	1	NA	NA	NA	10	NM_173731	208982	Mm.82306	NM_173731	ENSMUSG00000007908	Hmgcll1	BC037381	3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	protein-coding	0.105000	0.721393	
mm_72842.1	chr8	88300322	88300522	+	1	NA	NA	NA	6218	NM_001037724	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.010000	0.616915	
mm_135563.1	chr16	50070763	50070963	-	1	NA	NA	NA	1989	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.010000	0.497512	
mm_9583.1	chr1	174028357	174028557	-	1	NA	NA	NA	3298	NM_172648	226695	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	0.005000	0.293532	
mm_115585.1	chr13	11825834	11826034	-	1	NA	NA	NA	281011	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.005000	0.432836	
mm_80677.1	chr9	90245395	90245595	+	1	NA	NA	NA	25274	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.015000	0.502488	
mm_132731.1	chr16	43664445	43664645	+	1	NA	NA	NA	-361	NM_001146325	100043314	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	ENSMUSG00000071552|Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0.010000	0.547264	
mm_60984.1	chr7	49018416	49018616	+	1	NA	NA	NA	59443	NM_001111016	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.005000	0.402985	
mm_145481.1	chr18	60379159	60379359	+	1	NA	NA	NA	3230	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.000000	0.353234	
mm_20568.1	chr2	131083723	131083923	-	1	NA	NA	NA	2942	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.020000	0.542289	
mm_18557.1	chr2	65237690	65237890	-	1	NA	NA	NA	836	NM_177025	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.030000	0.437811	
mm_148995.1	chr19	8618231	8618431	+	1	NA	NA	NA	335	NM_008766	18399	Mm.30090	NM_008766	ENSMUSG00000024650	Slc22a6	NKT|Oat1|Orctl1|mOat1	solute carrier family 22 (organic anion transporter), member 6	protein-coding	0.015000	0.597015	
mm_29960.1	chr3	133310523	133310723	-	1	NA	NA	NA	513	NM_146141	74776	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0.080000	0.611940	
mm_104845.1	chr11	99230839	99231039	-	1	NA	NA	NA	78	NM_020618	57376	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	0.065000	0.616915	
mm_49397.1	chr6	28424243	28424443	+	1	NA	NA	NA	703	NM_007480	11844	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	0.030000	0.587065	
mm_76179.1	chr8	82401562	82401762	-	1	NA	NA	NA	924	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.015000	0.427861	
mm_31610.1	chr4	58985502	58985702	+	1	NA	NA	NA	1476	NM_025968	67103	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	0.030000	0.497512	
mm_6588.1	chr1	75264064	75264264	-	1	NA	NA	NA	44	NM_008985	19275	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	0.090000	0.741294	
mm_32070.1	chr4	97830138	97830338	+	1	NA	NA	NA	52612	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.000000	0.343284	
mm_16291.1	chr2	174111104	174111304	+	1	NA	NA	NA	853	NM_213733	228961	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	0.040000	0.636816	
mm_137336.1	chr17	25129487	25129687	+	1	NA	NA	NA	-3804	NM_011930	26373	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.015000	0.502488	
mm_21933.1	chr2	167056664	167056864	-	1	NA	NA	NA	-6170	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.015000	0.547264	
mm_59605.1	chr7	28140106	28140306	+	1	NA	NA	NA	10740	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.040000	0.492537	
mm_972.1	chr1	58392771	58392971	+	1	NA	NA	NA	-265	NM_025824	66882	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.075000	0.721393	
mm_120.1	chr1	9798070	9798270	+	1	NA	NA	NA	40	NM_177547	170755	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.200000	0.830846	
mm_68304.1	chr7	105746461	105746661	-	1	NA	NA	NA	-2223	NM_020024	24075	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	0.015000	0.502488	
mm_123555.1	chr14	66846427	66846627	-	1	NA	NA	NA	22073	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.010000	0.527363	
mm_139635.1	chr17	57375886	57376086	+	1	NA	NA	NA	17300	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.010000	0.462687	
mm_105036.1	chr11	100582994	100583194	-	1	NA	NA	NA	7203	NM_001146318	12799	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.000000	0.427861	
mm_39119.1	chr4	154946345	154946545	-	1	NA	NA	NA	-14478	NM_010419	15208	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hairy and enhancer of split 5 (Drosophila)	protein-coding	0.030000	0.592040	-33(TGCCATAAAGGC,-,0.00)
mm_4919.1	chr1	190911769	190911969	+	1	NA	NA	NA	-99	NM_178775	320119	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.080000	0.592040	
mm_45980.1	chr5	90474587	90474787	-	1	NA	NA	NA	13817	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.025000	0.487562	
mm_51062.1	chr6	65797418	65797618	+	1	NA	NA	NA	18556	NM_029549	70779	Mm.263355	NM_027547	ENSMUSG00000029913	Prdm5	4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2	PR domain containing 5	protein-coding	0.010000	0.417910	
mm_110480.1	chr12	51865777	51865977	-	1	NA	NA	NA	-36341	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.020000	0.512438	
mm_87713.1	chr10	60062350	60062550	+	1	NA	NA	NA	-43807	NM_052994	94214	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.025000	0.502488	
mm_73957.1	chr8	120372223	120372423	+	1	NA	NA	NA	-116543	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.010000	0.547264	
mm_135882.1	chr16	64479137	64479337	-	1	NA	NA	NA	-103	NM_173861	224291	Mm.246580	NM_173861	ENSMUSG00000068167	Csnka2ip	Ckt2	casein kinase 2, alpha prime interacting protein	protein-coding	0.025000	0.417910	
mm_42174.1	chr5	112261644	112261844	+	1	NA	NA	NA	5924	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.025000	0.472637	
mm_44040.1	chr5	147519609	147519809	+	1	NA	NA	NA	89129	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.020000	0.512438	
mm_5753.1	chr1	46853520	46853720	-	1	NA	NA	NA	-111	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.155000	0.751244	
mm_65606.1	chr7	27396493	27396693	-	1	NA	NA	NA	-40	NM_001199236	80297	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0.170000	0.835821	
mm_30761.1	chr4	15881164	15881364	+	1	NA	NA	NA	0	NM_009788	12307	Mm.277665	NM_009788	ENSMUSG00000028222	Calb1	Brain-2|CB|Calb|Calb-1	calbindin 1	protein-coding	0.120000	0.716418	
mm_70811.1	chr8	23062352	23062552	+	1	NA	NA	NA	4193	NR_102385	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.020000	0.457711	
mm_7299.1	chr1	97976873	97977073	-	1	NA	NA	NA	70820	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA	0.095000	0.751244	
mm_102020.1	chr11	51644247	51644447	-	1	NA	NA	NA	-6607	NR_027958	97775	Mm.220299	NM_175289	ENSMUSG00000052563	D930048N14Rik	AI315703|R75254	RIKEN cDNA D930048N14 gene	ncRNA	0.055000	0.651741	
mm_91183.1	chr10	20952075	20952275	-	1	NA	NA	NA	-372	NM_026203	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.060000	0.552239	
mm_18243.1	chr2	52185987	52186187	-	1	NA	NA	NA	-104915	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.025000	0.442786	
mm_129873.1	chr15	83423665	83423865	-	1	NA	NA	NA	9085	NM_011862	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.000000	0.512438	
mm_71430.1	chr8	46492837	46493037	+	1	NA	NA	NA	1971	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.035000	0.547264	
mm_71456.1	chr8	46521723	46521923	+	1	NA	NA	NA	-30246	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.005000	0.383085	
mm_158824.1	chrX	167446479	167446679	-	1	NA	NA	NA	-63830	NM_001313758	110639	Mm.272955	NM_026662	ENSMUSG00000025742	Prps2	2610101M19Rik|AA589463|AI464149|Prps-2	phosphoribosyl pyrophosphate synthetase 2	protein-coding	0.005000	0.517413	
mm_165832.1	chr3	152252792	152252992	+	1	NA	NA	NA	13428	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.025000	0.383085	
mm_44608.1	chr5	25330533	25330733	-	1	NA	NA	NA	107740	NM_144908	231050	Mm.21814	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.005000	0.343284	
mm_50483.1	chr6	48988406	48988606	+	1	NA	NA	NA	1645	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.015000	0.522388	
mm_44079.1	chr5	149068359	149068559	+	1	NA	NA	NA	-15402	NM_010439	15289	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.045000	0.447761	
mm_59809.1	chr7	29170114	29170314	+	1	NA	NA	NA	4	NM_182694	243897	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	0.030000	0.587065	-65(CATTATAAAGGG,-,0.00)
mm_26782.1	chr3	9004666	9004866	-	1	NA	NA	NA	-251	NM_001025264	21985	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.040000	0.537313	
mm_84765.1	chr9	75611043	75611243	-	1	NA	NA	NA	182	NM_016711	50876	Mm.291880	NM_016711	ENSMUSG00000032186	Tmod2	N-Tmod|NTMOD	tropomodulin 2	protein-coding	0.135000	0.771144	
mm_9946.1	chr1	190911707	190911907	-	1	NA	NA	NA	-37	NM_178775	320119	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.090000	0.631841	
mm_36981.1	chr4	109661168	109661368	-	1	NA	NA	NA	4104	NM_007671	12580	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	protein-coding	0.025000	0.507463	
mm_91359.1	chr10	28985219	28985419	-	1	NA	NA	NA	987	NM_026336	67719	Mm.440480	NM_026336	ENSMUSG00000015519	2310057J18Rik	2210414P04Rik|Leg1	RIKEN cDNA 2310057J18 gene	protein-coding	0.005000	0.388060	-36(CTCTTTATAAAA,-,0.00)
mm_58322.1	chr6	146501914	146502114	-	1	NA	NA	NA	209	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.090000	0.706468	
mm_100387.1	chr11	119355482	119355682	+	1	NA	NA	NA	25	NM_178743	268512	Mm.31869	NM_178743	ENSMUSG00000039908	Slc26a11	F630021I08Rik	solute carrier family 26, member 11	protein-coding	0.085000	0.651741	
mm_129085.1	chr15	75901404	75901604	-	1	NA	NA	NA	-7023	NM_172607	223646	Mm.288368	NM_172607	ENSMUSG00000022574	Naprt	9130210N20Rik|Naprt1	nicotinate phosphoribosyltransferase	protein-coding	0.015000	0.537313	
mm_99330.1	chr11	101460032	101460232	+	1	NA	NA	NA	6067	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.015000	0.606965	
mm_171156.1	chr3	22081130	22081330	-	1	NA	NA	NA	4578	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.050000	0.542289	
mm_34224.1	chr4	140995470	140995670	+	1	NA	NA	NA	8697	NM_001164366	74772	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.030000	0.577114	
mm_106420.1	chr11	119228383	119228583	-	1	NA	NA	NA	16	NM_001347625	207592	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	0.145000	0.791045	
mm_123836.1	chr14	70630101	70630301	-	1	NA	NA	NA	-47	NM_013514	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.015000	0.592040	
mm_131814.1	chr16	22920194	22920394	+	1	NA	NA	NA	72	NM_001083904	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.025000	0.507463	
mm_52072.1	chr6	97826853	97827053	+	1	NA	NA	NA	19895	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.015000	0.422886	32(GCTTTAATGGGG,+,0.00)
mm_94304.1	chr11	4161007	4161207	+	1	NA	NA	NA	753	NM_026175	67465	Mm.156914	NM_026175	ENSMUSG00000002129	Sf3a1	1200014H24Rik|5930416L09Rik|AI159724	splicing factor 3a, subunit 1	protein-coding	0.025000	0.497512	
mm_136152.1	chr16	87654195	87654395	-	1	NA	NA	NA	-44659	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.020000	0.492537	
mm_151119.1	chr19	47864613	47864813	+	1	NA	NA	NA	-832	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.005000	0.402985	
mm_46695.1	chr5	110097388	110097588	-	1	NA	NA	NA	-2481	NM_207279	403178	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0.015000	0.422886	
mm_102771.1	chr11	68270857	68271057	-	1	NA	NA	NA	50065	NR_105833	102465219		NR_105833	ENSMUSG00000099174	Mir6406	Gm27981|mmu-mir-6406	microRNA 6406	ncRNA	0.035000	0.507463	
mm_84085.1	chr9	58202660	58202860	-	1	NA	NA	NA	-137	NR_033522	665268	Mm.451475	NR_033522	ENSMUSG00000057818	1600029O15Rik	-	ribosomal protein L17 pseudogene	pseudo	0.020000	0.572139	
mm_139074.1	chr17	46650552	46650752	+	1	NA	NA	NA	314	NM_025611	66515	Mm.329078	NM_025611	ENSMUSG00000038545	Cul7	2510004L20Rik|AA409809|C230011P08Rik|p185|p193	cullin 7	protein-coding	0.080000	0.706468	
mm_3841.1	chr1	160044477	160044677	+	1	NA	NA	NA	197	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.040000	0.646766	
mm_70062.1	chr7	142652159	142652359	-	1	NA	NA	NA	2737	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.010000	0.402985	69(CTTTTTATGCGC,+,0.00)
mm_26978.1	chr3	25431621	25431821	-	1	NA	NA	NA	-647715	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.005000	0.303483	
mm_112145.1	chr12	113214937	113215137	-	1	NA	NA	NA	29134	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.025000	0.532338	
mm_88945.1	chr10	81328595	81328795	+	1	NA	NA	NA	-8	NM_009325	21390	Mm.4545	NM_009325	ENSMUSG00000034881	Tbxa2r	TP|TXA2-R	thromboxane A2 receptor	protein-coding	0.050000	0.666667	
mm_64711.1	chr7	4628444	4628644	-	1	NA	NA	NA	1938	NM_023440	68255	Mm.389784	NM_023440	ENSMUSG00000045282	Tmem86b	C330014O21Rik	transmembrane protein 86B	protein-coding	0.015000	0.552239	
mm_66970.1	chr7	63212456	63212656	-	1	NA	NA	NA	-30	NM_007390	11441	Mm.113464	NM_007390	ENSMUSG00000030525	Chrna7	Acra7|alpha7|nAchR	cholinergic receptor, nicotinic, alpha polypeptide 7	protein-coding	0.185000	0.800995	1(GCGCTTTAAAGG,-,0.00),2(CGCTTTAAAGGC,-,0.00),3(GCTTTAAAGGCG,+,0.00)
mm_42466.1	chr5	115453775	115453975	+	1	NA	NA	NA	-12391	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.030000	0.651741	
mm_166416.1	chr5	137151499	137151699	-	1	NA	NA	NA	-35392	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.502488	
mm_22192.1	chr2	173276350	173276550	-	1	NA	NA	NA	83	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.185000	0.800995	
mm_2135.1	chr1	88070681	88070881	+	1	NA	NA	NA	2	NM_201644	394434	Mm.300095	NM_201644	ENSMUSG00000090175	Ugt1a9	UDPGT|UDPGT 1-9|UGT1-09|UGT1.9|UGTP4|Ugt1a12|mUGTBr/P	UDP glucuronosyltransferase 1 family, polypeptide A9	protein-coding	0.005000	0.427861	
mm_149983.1	chr19	29151614	29151814	+	1	NA	NA	NA	16435	NR_029778	724062		NR_029778	ENSMUSG00000065556	Mir101b	Mirn101b|mir-101b	microRNA 101b	ncRNA	0.010000	0.432836	
mm_101542.1	chr11	33529681	33529881	-	1	NA	NA	NA	-16035	NM_023146	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.000000	0.532338	
mm_157338.1	chrX	36807713	36807913	-	1	NA	NA	NA	9387	NR_131979	69591	Mm.482947	NR_131979	ENSMUSG00000097468	Mdrl	2310010G23Rik	mitochondrial dynamic related lncRNA	ncRNA	0.065000	0.587065	
mm_49989.1	chr6	41046978	41047178	+	1	NA	NA	NA	-11569	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.487562	
mm_156203.1	chrX	134426945	134427145	+	1	NA	NA	NA	22265	NM_010078	13497	Mm.121662	NM_010078	ENSMUSG00000000223	Drp2	AW495265|DRP-2	dystrophin related protein 2	protein-coding	0.025000	0.616915	
mm_94265.1	chr11	3516753	3516953	+	1	NA	NA	NA	2169	NM_053267	114679	Mm.34046	NM_053267	ENSMUSG00000075702	Selenom	1500040L08Rik|A230103K18|Selm|Sepm	selenoprotein M	protein-coding	0.020000	0.592040	
mm_170850.1	chr2	177840236	177840436	-	1	NA	NA	NA	0	NM_001024849	329575	Mm.425123	NM_001024849	ENSMUSG00000095362	Gm14325	OTTMUSG00000016325	predicted gene 14325	protein-coding	0.020000	0.492537	
mm_84663.1	chr9	71896006	71896206	-	1	NA	NA	NA	-10	NM_001253863	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.000000	0.407960	
mm_170116.1	chr17	39846177	39846377	+	1	NA	NA	NA	3280	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.125000	0.716418	
mm_45329.1	chr5	65492848	65493048	-	1	NA	NA	NA	-113	NM_133697	68552	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.135000	0.731343	
mm_27554.1	chr3	58522311	58522511	-	1	NA	NA	NA	-3410	NM_001005509	229317	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	0.010000	0.477612	
mm_156024.1	chrX	107148966	107149166	+	1	NA	NA	NA	139	NM_001122596	213438	Mm.265244	NM_175442	ENSMUSG00000054293	A630033H20Rik	AI662791|P2ry10	RIKEN cDNA A630033H20 gene	protein-coding	0.005000	0.373134	
mm_36946.1	chr4	108834147	108834347	-	1	NA	NA	NA	-431	NM_025334	66073	Mm.159965	NM_025334	ENSMUSG00000028567	Txndc12	0610040B21Rik|ERp16|ERp19	thioredoxin domain containing 12 (endoplasmic reticulum)	protein-coding	0.040000	0.472637	
mm_62760.1	chr7	112083029	112083229	+	1	NA	NA	NA	59623	NM_177249	74996	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	0.000000	0.368159	
mm_87635.1	chr10	58351818	58352018	+	1	NA	NA	NA	-19536	NM_201242	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.000000	0.348259	
mm_157036.1	chrX	7947726	7947926	-	1	NA	NA	NA	63	NM_001130416	15185	Mm.29854	NM_010413	ENSMUSG00000031161	Hdac6	Hd6|Hdac5|Sfc6|mHDA2	histone deacetylase 6	protein-coding	0.080000	0.666667	
mm_112495.1	chr13	6604894	6605094	+	1	NA	NA	NA	43777	NM_019703	56421	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.025000	0.572139	
mm_164324.1	chr16	5305225	5305425	+	1	NA	NA	NA	-49369	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.005000	0.467662	
mm_58590.1	chr7	5015332	5015532	+	1	NA	NA	NA	-76	NM_025324	66056	Mm.19974	NM_025324	ENSMUSG00000051184	Zfp524	0610012F07Rik|2300009P13Rik|Znf524	zinc finger protein 524	protein-coding	0.120000	0.776119	
mm_117734.1	chr13	95618566	95618766	-	1	NA	NA	NA	-233	NM_010169	14062	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	0.075000	0.661692	
mm_83936.1	chr9	56635934	56636134	-	1	NA	NA	NA	-386	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.075000	0.621891	
mm_93618.1	chr10	117277520	117277720	-	1	NA	NA	NA	4652	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.010000	0.482587	
mm_36736.1	chr4	99655001	99655201	-	1	NA	NA	NA	-1198	NM_010425	15221	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	0.040000	0.567164	
mm_34546.1	chr4	149545019	149545219	+	1	NA	NA	NA	2	NM_001141930	67087	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0.015000	0.597015	
mm_3558.1	chr1	150423787	150423987	+	1	NA	NA	NA	-30832	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.020000	0.383085	
mm_7018.1	chr1	86582433	86582633	-	1	NA	NA	NA	-32	NM_008801	18582	Mm.12925	NM_008801	ENSMUSG00000026239	Pde6d	AI841218|PrBP/delta	phosphodiesterase 6D, cGMP-specific, rod, delta	protein-coding	0.075000	0.636816	
mm_163220.1	chr11	101593884	101594084	-	1	NA	NA	NA	11742	NM_144830	217203	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.010000	0.343284	
mm_25925.1	chr3	131189174	131189374	+	1	NA	NA	NA	76483	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.020000	0.417910	
mm_156712.1	chrX	159627440	159627640	+	1	NA	NA	NA	268	NM_001135727	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.130000	0.746269	
mm_167153.1	chr7	131322302	131322502	-	1	NA	NA	NA	-110	NM_008411	16433	Mm.142717	NM_008411	ENSMUSG00000040205	Cuzd1	Erg-1|Itmap1|Uo-44|Usg|Utczp	CUB and zona pellucida-like domains 1	protein-coding	0.000000	0.522388	
mm_32445.1	chr4	107314257	107314457	+	1	NA	NA	NA	-6	NM_145550	230584	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	0.075000	0.616915	-49(GCTTTAAGAGAG,+,0.00)
mm_28585.1	chr3	94377143	94377343	-	1	NA	NA	NA	-189	NM_001293734	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.035000	0.597015	
mm_51520.1	chr6	83156387	83156587	+	1	NA	NA	NA	83	NM_027948	71837	Mm.17621	NM_027948	ENSMUSG00000030030	1700003E16Rik	AU041756	RIKEN cDNA 1700003E16 gene	protein-coding	0.085000	0.641791	
mm_91532.1	chr10	37321228	37321428	-	1	NA	NA	NA	-182402	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.010000	0.502488	
mm_149669.1	chr19	18840512	18840712	+	1	NA	NA	NA	90629	NM_153417	225997	Mm.215171	NM_153417	ENSMUSG00000024727	Trpm6	CHAK2|TRPM6/CHAK2	transient receptor potential cation channel, subfamily M, member 6	protein-coding	0.005000	0.373134	39(CCCTTTAAGACC,+,0.00),40(CCTTTAAGACCT,+,0.00)
mm_95976.1	chr11	58963666	58963866	+	1	NA	NA	NA	-15	NM_031172	56631	Mm.179733	NM_031172	ENSMUSG00000036964	Trim17	Rnf16|terf	tripartite motif-containing 17	protein-coding	0.050000	0.666667	
mm_523.1	chr1	37614315	37614515	+	1	NA	NA	NA	-73399	NM_173870	269181	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.040000	0.601990	
mm_33115.1	chr4	124741764	124741964	+	1	NA	NA	NA	14	NR_126474	16330	Mm.296202	NM_008385	ENSMUSG00000028894	Inpp5b	5PTase|AW260155|INPP5P	inositol polyphosphate-5-phosphatase B	protein-coding	0.045000	0.611940	
mm_108137.1	chr12	76111260	76111460	+	1	NA	NA	NA	65899	NM_010157	13983	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0.005000	0.537313	24(GCCTTAAGACCC,+,0.00)
mm_118435.1	chr14	8016557	8016757	+	1	NA	NA	NA	13691	NM_001331064	66082	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	0.015000	0.412935	
mm_10463.1	chr2	14314190	14314390	+	1	NA	NA	NA	53287	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.000000	0.417910	
mm_82103.1	chr9	123067021	123067221	+	1	NA	NA	NA	32380	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.010000	0.507463	
mm_124545.1	chr14	122473447	122473647	-	1	NA	NA	NA	1652	NR_045046	69248	Mm.235369	NR_045046	ENSMUSG00000085555	2610035F20Rik	-	RIKEN cDNA 2610035F20 gene	ncRNA	0.025000	0.582090	4(TCATTTAAAGAC,+,0.00)
mm_93482.1	chr10	111995797	111995997	-	1	NA	NA	NA	1367	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.005000	0.442786	67(CCTTTTAGGGTT,+,0.00)
mm_23797.1	chr3	79842672	79842872	+	1	NA	NA	NA	-110	NM_027495	70652	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.035000	0.537313	
mm_138485.1	chr17	35195875	35196075	+	1	NA	NA	NA	1003	NR_105939	102465588		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	0.135000	0.701493	
mm_156051.1	chrX	109095362	109095562	+	1	NA	NA	NA	55	NM_019989	56726	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	0.025000	0.592040	86(CCTTTTCAAGAC,+,0.00)
mm_42804.1	chr5	121738748	121738948	+	1	NA	NA	NA	27239	NM_009125	20239	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.005000	0.412935	
mm_162005.1	chr19	40612431	40612631	+	1	NA	NA	NA	165	NM_001304721	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.025000	0.477612	
mm_41872.1	chr5	104508304	104508504	+	1	NA	NA	NA	52	NM_001166581	100042165	Mm.482189	NM_001166581	ENSMUSG00000079065	BC005561	-	cDNA sequence BC005561	protein-coding	0.155000	0.716418	
mm_152327.1	chr19	9947892	9948092	-	1	NA	NA	NA	-32608	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.010000	0.467662	
mm_145980.1	chr18	68059604	68059804	+	1	NA	NA	NA	126447	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.010000	0.442786	
mm_47415.1	chr5	123138982	123139182	-	1	NA	NA	NA	-3111	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.070000	0.616915	
mm_146407.1	chr18	83996227	83996427	+	1	NA	NA	NA	90235	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.005000	0.567164	
mm_118543.1	chr14	16946549	16946749	+	1	NA	NA	NA	135682	NM_001289760	218772	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	0.010000	0.422886	
mm_37103.1	chr4	116627839	116628039	-	1	NA	NA	NA	12	NM_016777	50927	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.055000	0.532338	
mm_11013.1	chr2	26581029	26581229	+	1	NA	NA	NA	73	NM_178444	353156	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0.025000	0.631841	
mm_8639.1	chr1	156428754	156428954	-	1	NA	NA	NA	-7939	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.000000	0.472637	
mm_6884.1	chr1	84695659	84695859	-	1	NA	NA	NA	-80	NR_039588	100628595		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0.120000	0.756219	
mm_4375.1	chr1	172136090	172136290	+	1	NA	NA	NA	9435	NM_023041	19298	Mm.247764	NM_023041	ENSMUSG00000003464	Pex19	Pxf	peroxisomal biogenesis factor 19	protein-coding	0.000000	0.358209	
mm_90987.1	chr10	13868727	13868927	-	1	NA	NA	NA	130	NM_025446	66253	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	0.165000	0.810945	
mm_124406.1	chr14	115477446	115477646	-	1	NA	NA	NA	-67994	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0.035000	0.542289	
mm_79682.1	chr9	59870853	59871053	+	1	NA	NA	NA	79126	NM_013708	23958	Mm.103641	NM_013708	ENSMUSG00000032292	Nr2e3	A930035N01Rik|PNR|RNR|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding	0.005000	0.427861	
mm_62969.1	chr7	119895760	119895960	+	1	NA	NA	NA	-1	NM_001285961	73919	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0.090000	0.646766	
mm_75909.1	chr8	71381899	71382099	-	1	NA	NA	NA	-47	NM_010150	13864	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	0.200000	0.850746	-32(GCCCTTATAAGG,-,0.00),-30(CCTTATAAGGGC,+,0.00)
mm_30140.1	chr3	142364179	142364379	-	1	NA	NA	NA	27571	NM_022554	56376	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0.010000	0.457711	
mm_137585.1	chr17	28007600	28007800	+	1	NA	NA	NA	72884	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.030000	0.537313	
mm_150523.1	chr19	39041948	39042148	+	1	NA	NA	NA	-18958	NM_028191	72303	Mm.482578	NM_028191	ENSMUSG00000067231	Cyp2c65	2210009K14Rik	cytochrome P450, family 2, subfamily c, polypeptide 65	protein-coding	0.020000	0.427861	-95(CCTTTAATAACA,+,0.00)
mm_18647.1	chr2	69564821	69565021	-	1	NA	NA	NA	21146	NM_001081088	14725	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	0.010000	0.378109	
mm_23897.1	chr3	83031624	83031824	+	1	NA	NA	NA	5571	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.030000	0.472637	
mm_32338.1	chr4	104463926	104464126	+	1	NA	NA	NA	96488	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding	0.020000	0.487562	
mm_97136.1	chr11	75172461	75172661	+	1	NA	NA	NA	-827	NR_029794	387208		NR_029794	ENSMUSG00000065590	Mir212	Mirn212|mir-212|mmu-mir-212	microRNA 212	ncRNA	0.140000	0.696517	-33(GCCTATAAAAGC,-,0.00)
mm_85826.1	chr9	110422322	110422522	-	1	NA	NA	NA	2614	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.010000	0.507463	
mm_72095.1	chr8	71586022	71586222	+	1	NA	NA	NA	-6062	NM_025396	66171	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	0.015000	0.592040	
mm_102235.1	chr11	54955982	54956182	-	1	NA	NA	NA	6858	NM_021327	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.110000	0.706468	
mm_68725.1	chr7	120201888	120202088	-	1	NA	NA	NA	0	NM_016669	12971	Mm.9114	NM_016669	ENSMUSG00000030905	Crym	-	crystallin, mu	protein-coding	0.095000	0.701493	
mm_64820.1	chr7	7298676	7298876	-	1	NA	NA	NA	60	NM_001302387	12727	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2	chloride channel, voltage-sensitive 4	protein-coding	0.095000	0.661692	
mm_67104.1	chr7	70337752	70337952	-	1	NA	NA	NA	0	NR_131144	624549	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	-	predicted gene, 29683	ncRNA	0.075000	0.701493	
mm_3176.1	chr1	135740617	135740817	+	1	NA	NA	NA	11520	NM_007791	13007	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.010000	0.417910	
mm_125421.1	chr15	41847898	41848098	+	1	NA	NA	NA	17040	NM_001130164	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.010000	0.427861	
mm_131550.1	chr16	17898532	17898732	+	1	NA	NA	NA	-5	NM_009436	22115	Mm.310201	NM_009436	ENSMUSG00000045521	Tssk2	DGS-G|SPOGA2|Stk22b|Tsk2	testis-specific serine kinase 2	protein-coding	0.040000	0.646766	
mm_134282.1	chr16	14204607	14204807	-	1	NA	NA	NA	41432	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.005000	0.527363	
mm_139077.1	chr17	46678714	46678914	+	1	NA	NA	NA	-1639	NM_001277310	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.010000	0.572139	
mm_66994.1	chr7	64373948	64374148	-	1	NA	NA	NA	47	NM_177893	330554	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.070000	0.611940	75(CTCTTTTTAAGA,-,0.00)
mm_130415.1	chr15	98004543	98004743	-	1	NA	NA	NA	81	NM_031163	12824	Mm.2423	NM_031163	ENSMUSG00000022483	Col2a1	Col2|Col2a|Col2a-1|Del1|Dmm|Lpk|Rgsc856	collagen, type II, alpha 1	protein-coding	0.090000	0.721393	
mm_103309.1	chr11	72796868	72797068	-	1	NA	NA	NA	742	NM_001045536	195018	Mm.272030	NM_001045536	ENSMUSG00000055670	Zzef1	8430405D05Rik|BC051585|C130099L13Rik|C85424|NSPA|mKIAA0399	zinc finger, ZZ-type with EF hand domain 1	protein-coding	0.010000	0.452736	
mm_146846.1	chr18	23952161	23952361	-	1	NA	NA	NA	-2427	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.000000	0.457711	
mm_66820.1	chr7	48456238	48456438	-	1	NA	NA	NA	4	NM_205810	233231	Mm.297430	NM_205810	ENSMUSG00000070547	Mrgprb1	MrgB1	MAS-related GPR, member B1	protein-coding	0.010000	0.432836	
mm_103565.1	chr11	77881090	77881290	-	1	NA	NA	NA	12682	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding	0.020000	0.512438	
mm_2682.1	chr1	127306511	127306711	+	1	NA	NA	NA	101625	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.035000	0.557214	
mm_125503.1	chr15	55307653	55307853	+	1	NA	NA	NA	3	NM_181277	12818	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.045000	0.587065	
mm_90044.1	chr10	115817429	115817629	+	1	NA	NA	NA	245	NM_001168679	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	0.030000	0.472637	
mm_64303.1	chr7	141861886	141862086	+	1	NA	NA	NA	22914	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.005000	0.517413	
mm_147480.1	chr18	47247996	47248196	-	1	NA	NA	NA	120772	NM_018744	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.025000	0.482587	
mm_113051.1	chr13	23652342	23652542	+	1	NA	NA	NA	-29884	NM_015787	50709	Mm.170587	NM_015787	ENSMUSG00000051627	Hist1h1e	H1-4|H1.4|H1e|H1f4|H1s-4|H1var2	histone cluster 1, H1e	protein-coding	0.015000	0.462687	-65(GCCTAGAAAAGG,-,0.00)
mm_56721.1	chr6	115592434	115592634	-	1	NA	NA	NA	42	NM_001101431	70291	Mm.133694	NM_001101431	ENSMUSG00000068011	Mkrn2os	2510049J12Rik	makorin, ring finger protein 2, opposite strand	protein-coding	0.015000	0.487562	
mm_161075.1	chr12	80518665	80518865	+	1	NA	NA	NA	-225	NM_001081421	108760	Mm.308296	NM_001081421	ENSMUSG00000021130	Galnt16	5730405L21Rik|AI415388|Galntl1|mpp-GalNAc-T16	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16	protein-coding	0.100000	0.686567	
mm_112753.1	chr13	19342012	19342212	+	1	NA	NA	NA	53701	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.407960	
mm_17196.1	chr2	25468039	25468239	-	1	NA	NA	NA	1610	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.030000	0.587065	
mm_43671.1	chr5	138775252	138775452	+	1	NA	NA	NA	20271	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.010000	0.512438	
mm_18765.1	chr2	73462339	73462539	-	1	NA	NA	NA	-8550	NM_001289722	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.005000	0.472637	
mm_147212.1	chr18	37954880	37955080	-	1	NA	NA	NA	8	NM_010411	15183	Mm.20521	NM_010411	ENSMUSG00000024454	Hdac3	AW537363	histone deacetylase 3	protein-coding	0.100000	0.701493	
mm_93071.1	chr10	89344986	89345186	-	1	NA	NA	NA	-87296	NR_102339	320091	Mm.236464	NM_178773	ENSMUSG00000035189	Ano4	A330096O15Rik|Gm65|Tmem16d	anoctamin 4	protein-coding	0.050000	0.651741	
mm_15339.1	chr2	155979508	155979708	+	1	NA	NA	NA	23050	NM_177217	16328	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	0.010000	0.527363	
mm_123349.1	chr14	63142270	63142470	-	1	NA	NA	NA	19908	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.015000	0.452736	
mm_111112.1	chr12	80960431	80960631	-	1	NA	NA	NA	7548	NM_011387	20493	Mm.486361	NM_011387	ENSMUSG00000021135	Slc10a1	Ntcp	solute carrier family 10 (sodium/bile acid cotransporter family), member 1	protein-coding	0.025000	0.477612	
mm_95369.1	chr11	49086723	49086923	+	1	NA	NA	NA	-194	NM_001271676	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.015000	0.492537	
mm_158547.1	chrX	145480579	145480779	-	1	NA	NA	NA	6960	NM_001290274	27494	Mm.100068	NM_153319	ENSMUSG00000041688	Amot	CAG-2|D0Kist1|Sii6	angiomotin	protein-coding	0.015000	0.398010	
mm_171775.1	chr5	109796199	109796399	-	1	NA	NA	NA	37843	NR_027964	667213	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213|ENSMUSG00000072761	zinc finger protein pseudogene	pseudo	0.030000	0.532338	
mm_124488.1	chr14	121738481	121738681	-	1	NA	NA	NA	348	NM_001128308	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.035000	0.522388	
mm_162948.1	chr11	3332387	3332587	+	1	NA	NA	NA	1756	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.055000	0.626866	
mm_99989.1	chr11	114720298	114720498	+	1	NA	NA	NA	-7014	NM_001034878	432611	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728	dynein, axonemal, intermediate chain 2	protein-coding	0.015000	0.447761	53(GCCTTGTAAAGG,-,0.00)
mm_81615.1	chr9	110769626	110769826	+	1	NA	NA	NA	6045	NM_010859	17897	Mm.7353	NM_010859	ENSMUSG00000059741	Myl3	MLC1s|MLC1v|Mylc|VLC1	myosin, light polypeptide 3	protein-coding	0.010000	0.522388	
mm_20115.1	chr2	121160113	121160313	-	1	NA	NA	NA	10912	NM_001290819	99334	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	0.010000	0.437811	
mm_97579.1	chr11	78944574	78944774	+	1	NA	NA	NA	19383	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.035000	0.582090	
mm_91571.1	chr10	40099336	40099536	-	1	NA	NA	NA	42818	NM_028247	72472	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.005000	0.388060	
mm_138640.1	chr17	35866078	35866278	+	1	NA	NA	NA	50	NM_001146710	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.040000	0.606965	
mm_107672.1	chr12	53838758	53838958	+	1	NA	NA	NA	365016	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	0.020000	0.398010	
mm_137494.1	chr17	26952746	26952946	+	1	NA	NA	NA	-4727	NR_037244	100526534		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0.005000	0.532338	
mm_6269.1	chr1	69548843	69549043	-	1	NA	NA	NA	137017	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.005000	0.388060	
mm_172101.1	chr6	31142592	31142792	-	1	NA	NA	NA	75782	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.050000	0.527363	
mm_159390.1	chr3	92352193	92352393	+	1	NA	NA	NA	150	NM_011471	20759	Mm.261596	NM_011471	ENSMUSG00000055030	Sprr2e	-	small proline-rich protein 2E	protein-coding	0.000000	0.378109	
mm_29321.1	chr3	108017559	108017759	-	1	NA	NA	NA	314	NM_010358	14862	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	0.060000	0.577114	
mm_58604.1	chr7	5051482	5051682	+	1	NA	NA	NA	50	NM_026900	68992	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	0.150000	0.746269	
mm_161377.1	chr14	69609378	69609578	+	1	NA	NA	NA	2	NM_033325	94352	Mm.116714	NM_033325	ENSMUSG00000034205	Loxl2	1110004B06Rik|4930526G11Rik|9430067E15Rik	lysyl oxidase-like 2	protein-coding	0.045000	0.656716	
mm_123298.1	chr14	61631791	61631991	-	1	NA	NA	NA	81	NR_029734	387134		NR_029734	ENSMUSG00000092995	Mir16-1	Mirn16|Mirn16-1|miR-16|mir-16-1	microRNA 16-1	ncRNA	0.020000	0.373134	
mm_105015.1	chr11	100414765	100414965	-	1	NA	NA	NA	-46	NM_176830	66180	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	0.060000	0.656716	
mm_13311.1	chr2	102658726	102658926	+	1	NA	NA	NA	143	NM_001077514	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.115000	0.721393	
mm_111187.1	chr12	84172305	84172505	-	1	NA	NA	NA	21610	NM_001163502	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.005000	0.328358	
mm_136652.1	chr17	5941280	5941480	+	1	NA	NA	NA	100	NM_001113352	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.045000	0.681592	
mm_166213.1	chr5	53469649	53469849	+	1	NA	NA	NA	-86030	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.025000	0.477612	
mm_142103.1	chr17	35835494	35835694	-	1	NA	NA	NA	2707	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.060000	0.587065	
mm_148712.1	chr19	5802712	5802912	+	1	NA	NA	NA	-140	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.020000	0.407960	
mm_74005.1	chr8	121084238	121084438	+	1	NA	NA	NA	-48	NM_010426	15227	Mm.33897	NM_010426	ENSMUSG00000042812	Foxf1	AI450827|FREAC1|Foxf1a|Freac-1|HFH-8|Hfh8	forkhead box F1	protein-coding	0.130000	0.791045	
mm_155726.1	chrX	96155467	96155667	+	1	NA	NA	NA	59522	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.010000	0.427861	
mm_77144.1	chr8	111537466	111537666	-	1	NA	NA	NA	-777	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.070000	0.621891	
mm_70471.1	chr8	12323741	12323941	+	1	NA	NA	NA	-61930	NR_027975	434280	Mm.447484	NM_001013812	ENSMUSG00000047935	Gm5607	EG434280	predicted gene 5607	ncRNA	0.040000	0.631841	
mm_18331.1	chr2	57292352	57292552	-	1	NA	NA	NA	54070	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.020000	0.422886	
mm_94021.1	chr10	127666701	127666901	-	1	NA	NA	NA	-98	NM_008668	17937	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0.055000	0.726368	
mm_142555.1	chr17	46629958	46630158	-	1	NA	NA	NA	-554	NM_175168	71461	Mm.181833	NM_175168	ENSMUSG00000023972	Ptk7	8430404F20Rik|chz|mPTK7/CCK4	PTK7 protein tyrosine kinase 7	protein-coding	0.015000	0.572139	
mm_150253.1	chr19	34192153	34192353	+	1	NA	NA	NA	-17	NM_029682	76630	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.055000	0.641791	
mm_160007.1	chr6	124756333	124756533	-	1	NA	NA	NA	54	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.185000	0.845771	
mm_29584.1	chr3	117360306	117360506	-	1	NA	NA	NA	470	NM_177664	229791	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	0.035000	0.606965	
mm_48260.1	chr5	137857944	137858144	-	1	NA	NA	NA	5	NM_133209	170741	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	0.005000	0.527363	
mm_26927.1	chr3	20251902	20252102	-	1	NA	NA	NA	-9821	NM_007753	12873	Mm.1135	NM_007753	ENSMUSG00000001865	Cpa3	MC-CPA	carboxypeptidase A3, mast cell	protein-coding	0.020000	0.432836	
mm_153595.1	chr19	43740437	43740637	-	1	NA	NA	NA	12463	NM_144874	226139	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	0.010000	0.383085	
mm_85879.1	chr9	110990359	110990559	-	1	NA	NA	NA	-746	NM_153100	235636	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	0.025000	0.542289	
mm_106327.1	chr11	118317392	118317592	-	1	NA	NA	NA	25042	NM_021440	58251	Mm.439815	NM_021440	ENSMUSG00000076433	BC100451	Cep295nl|Ddc8|FS39|Kiaa1731nl	cDNA sequence BC100451	protein-coding	0.025000	0.512438	
mm_122791.1	chr14	54417696	54417896	-	1	NA	NA	NA	-94	NM_011405	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.040000	0.636816	
mm_168311.1	chr11	109011803	109012003	-	1	NA	NA	NA	91554	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.090000	0.651741	
mm_148499.1	chr19	4192073	4192273	+	1	NA	NA	NA	-1	NM_031868	19045	Mm.1970	NM_031868	ENSMUSG00000040385	Ppp1ca	Ppp1c|dism2	protein phosphatase 1, catalytic subunit, alpha isoform	protein-coding	0.105000	0.741294	
mm_25369.1	chr3	107101606	107101806	+	1	NA	NA	NA	139	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.095000	0.706468	
mm_96570.1	chr11	69045577	69045777	+	1	NA	NA	NA	40	NM_011496	20877	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.100000	0.631841	
mm_122484.1	chr14	46387173	46387373	-	1	NA	NA	NA	3396	NM_001316360	12159	Mm.6813	NM_007554	ENSMUSG00000021835	Bmp4	Bmp-4|Bmp2b|Bmp2b-1|Bmp2b1	bone morphogenetic protein 4	protein-coding	0.035000	0.492537	
mm_66927.1	chr7	61529790	61529990	-	1	NA	NA	NA	85437	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.000000	0.303483	
mm_108746.1	chr12	88794713	88794913	+	1	NA	NA	NA	309	NM_001198587	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.030000	0.542289	
mm_560.1	chr1	38022144	38022344	+	1	NA	NA	NA	24234	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.015000	0.417910	
mm_86352.1	chr9	123632447	123632647	-	1	NA	NA	NA	18	NM_011731	22599	Mm.41963	NM_011731	ENSMUSG00000025243	Slc6a20b	AA986306|Sit1|Slc6a20|XT3|Xtrp3	solute carrier family 6 (neurotransmitter transporter), member 20B	protein-coding	0.010000	0.502488	
mm_43712.1	chr5	139389807	139390007	+	1	NA	NA	NA	3	NM_001038703	80290	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|PGR8	G protein-coupled receptor 146	protein-coding	0.030000	0.606965	
mm_43913.1	chr5	144358626	144358826	+	1	NA	NA	NA	201	NR_102373	100579137		NR_102372	ENSMUSG00000104600	Dmrt1i	Dmr	Dmrt1 interacting ncRNA	ncRNA	0.035000	0.626866	
mm_72401.1	chr8	81769979	81770179	+	1	NA	NA	NA	427517	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.000000	0.447761	
mm_58950.1	chr7	18718023	18718223	+	1	NA	NA	NA	33	NM_001004152	243862	Mm.389833	NM_001004152	ENSMUSG00000044903	Psg22	AA408604|cea9	pregnancy-specific glycoprotein 22	protein-coding	0.010000	0.487562	
mm_165276.1	chr2	77334970	77335170	+	1	NA	NA	NA	-54478	NM_175465	228071	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.020000	0.542289	
mm_163375.1	chr12	44254645	44254845	+	1	NA	NA	NA	-14409	NM_026164	67452	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	0.015000	0.407960	43(CCTTTTATATCT,+,0.00)
mm_145886.1	chr18	65580709	65580909	+	1	NA	NA	NA	579	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.180000	0.835821	
mm_9351.1	chr1	172082315	172082515	-	1	NA	NA	NA	-114	NM_009938	12847	Mm.30041	NM_009938	ENSMUSG00000026553	Copa	AU040324|xenin	coatomer protein complex subunit alpha	protein-coding	0.025000	0.517413	
mm_45852.1	chr5	87781746	87781946	-	1	NA	NA	NA	7396	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.010000	0.442786	
mm_86346.1	chr9	123632265	123632465	-	1	NA	NA	NA	200	NM_011731	22599	Mm.41963	NM_011731	ENSMUSG00000025243	Slc6a20b	AA986306|Sit1|Slc6a20|XT3|Xtrp3	solute carrier family 6 (neurotransmitter transporter), member 20B	protein-coding	0.020000	0.572139	
mm_172530.1	chr7	86119213	86119413	+	1	NA	NA	NA	52411	NM_001102578	546981	Mm.469835	NM_001102578	ENSMUSG00000090436	Vmn2r75	EG546981	vomeronasal 2, receptor 75	protein-coding	0.065000	0.646766	
mm_43706.1	chr5	139354116	139354316	+	1	NA	NA	NA	1599	NM_001160265	545817	Mm.482474	NM_001160265	ENSMUSG00000029541	Cyp2w1	Gm455	cytochrome P450, family 2, subfamily w, polypeptide 1	protein-coding	0.040000	0.616915	
mm_64145.1	chr7	141228726	141228926	+	1	NA	NA	NA	38	NM_001081118	101471	Mm.248656	NM_207211	ENSMUSG00000038611	Phrf1	AA673488	PHD and ring finger domains 1	protein-coding	0.135000	0.691542	
mm_64325.1	chr7	141997386	141997586	+	1	NA	NA	NA	5307	NR_037291	100526509		NR_037291	ENSMUSG00000092652	Mir3104	mir-3104|mmu-mir-3104	microRNA 3104	ncRNA	0.010000	0.517413	
mm_53239.1	chr6	127455215	127455415	+	1	NA	NA	NA	1592	NM_181402	101187	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.000000	0.388060	
mm_74491.1	chr8	4813362	4813562	-	1	NA	NA	NA	-33928	NM_011369	20419	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	0.000000	0.358209	
mm_12664.1	chr2	75659000	75659200	+	1	NA	NA	NA	-159	NM_146130	229279	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.175000	0.726368	
mm_14586.1	chr2	135987505	135987705	+	1	NA	NA	NA	-70322	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.010000	0.373134	
mm_15225.1	chr2	154536212	154536412	+	1	NA	NA	NA	-12592	NM_029305	75480	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0.015000	0.388060	
mm_72793.1	chr8	86914983	86915183	+	1	NA	NA	NA	-29825	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.005000	0.442786	
mm_18062.1	chr2	41988760	41988960	-	1	NA	NA	NA	458708	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.040000	0.557214	-27(GACTATAAAAAG,-,0.00)
mm_112164.1	chr12	113360285	113360485	-	1	NA	NA	NA	-129180	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.015000	0.532338	
mm_120306.1	chr14	63141636	63141836	+	1	NA	NA	NA	19274	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.015000	0.527363	
mm_173273.1	chrX	98142189	98142389	-	1	NA	NA	NA	-6468	NM_013476	11835	Mm.39005	NM_013476	ENSMUSG00000046532	Ar	AW320017|Tfm	androgen receptor	protein-coding	0.005000	0.417910	
mm_77208.1	chr8	113854852	113855052	-	1	NA	NA	NA	-6113	NM_172466	208936	Mm.167471	NM_172466	ENSMUSG00000053399	Adamts18	9630038L21|ADAMTS21|E130314N14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	protein-coding	0.005000	0.417910	
mm_94858.1	chr11	24077055	24077255	+	1	NA	NA	NA	-901	NM_016707	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.055000	0.606965	
mm_47257.1	chr5	121660398	121660598	-	1	NA	NA	NA	12	NM_028037	71985	Mm.45423	NM_028037	ENSMUSG00000029456	Acad10	2410021P16Rik	acyl-Coenzyme A dehydrogenase family, member 10	protein-coding	0.130000	0.691542	
mm_89205.1	chr10	86691557	86691757	+	1	NA	NA	NA	6130	NR_015572	66263	Mm.392261	NR_015572		1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	0.005000	0.487562	
mm_105893.1	chr11	114960369	114960569	-	1	NA	NA	NA	-52	NM_199225	387565	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	0.000000	0.512438	
mm_1917.1	chr1	86022070	86022270	+	1	NA	NA	NA	228	NM_027029	70060	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0.045000	0.582090	
mm_29066.1	chr3	103791829	103792029	-	1	NA	NA	NA	-366	NM_001301304	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.030000	0.452736	
mm_121308.1	chr14	106022962	106023162	+	1	NA	NA	NA	-83136	NM_198601	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0.010000	0.452736	
mm_95018.1	chr11	32000402	32000602	+	1	NA	NA	NA	83	NM_008741	18197	Mm.3304	NM_008741	ENSMUSG00000020297	Nsg2	-	neuron specific gene family member 2	protein-coding	0.055000	0.611940	
mm_139986.1	chr17	72837945	72838145	+	1	NA	NA	NA	1341	NM_027166	383295	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee-like 5 (Drosophila)	protein-coding	0.020000	0.383085	
mm_150096.1	chr19	29465868	29466068	+	1	NA	NA	NA	55049	NM_021396	58205	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.000000	0.378109	
mm_167577.1	chr9	44604612	44604812	+	1	NA	NA	NA	-180	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.175000	0.820896	
mm_77214.1	chr8	114131501	114131701	-	1	NA	NA	NA	-1973	NM_024446	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	0.020000	0.477612	
mm_56822.1	chr6	116735294	116735494	-	1	NA	NA	NA	-18636	NM_178768	319776	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.000000	0.422886	
mm_27390.1	chr3	50683300	50683500	-	1	NA	NA	NA	-239787	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.452736	
mm_80888.1	chr9	99451329	99451529	+	1	NA	NA	NA	-4814	NM_001165957	623534	Mm.484967	NM_001165957		Nme9	Txndc6	NME/NM23 family member 9	protein-coding	0.040000	0.552239	
mm_21484.1	chr2	163054349	163054549	-	1	NA	NA	NA	-186	NM_008652	17865	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	0.055000	0.606965	
mm_108034.1	chr12	73765592	73765792	+	1	NA	NA	NA	-135632	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.005000	0.373134	
mm_16878.1	chr2	12419365	12419565	-	1	NA	NA	NA	-5	NM_024185	66960	Mm.34059	NM_024185	ENSMUSG00000026767	Fam188a	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958	family with sequence similarity 188, member A	protein-coding	0.070000	0.611940	
mm_136232.1	chr16	90615860	90616060	-	1	NA	NA	NA	111411	NM_025642	66578	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0.025000	0.432836	
mm_45659.1	chr5	77114989	77115189	-	1	NA	NA	NA	34	NM_175606	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.030000	0.562189	
mm_15919.1	chr2	165065610	165065810	+	1	NA	NA	NA	10074	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.025000	0.557214	
mm_166513.1	chr6	14747958	14748158	-	1	NA	NA	NA	7216	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	0.005000	0.373134	
mm_13877.1	chr2	119903246	119903446	+	1	NA	NA	NA	6118	NM_013720	29808	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	0.010000	0.398010	
mm_158454.1	chrX	140589315	140589515	-	1	NA	NA	NA	11107	NM_001077364	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.010000	0.402985	
mm_133138.1	chr16	67648471	67648671	+	1	NA	NA	NA	-27663	NM_178721	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.000000	0.368159	
mm_97496.1	chr11	78344435	78344635	+	1	NA	NA	NA	1040	NM_011676	22248	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.005000	0.383085	
mm_19973.1	chr2	118256828	118257028	-	1	NA	NA	NA	38	NM_027759	71313	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	0.065000	0.562189	
mm_44842.1	chr5	34186979	34187179	-	1	NA	NA	NA	631	NM_010753	17122	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.115000	0.661692	
mm_75145.1	chr8	35588899	35589099	-	1	NA	NA	NA	21	NR_040376	100504714	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0.055000	0.641791	
mm_144515.1	chr18	24709414	24709614	+	1	NA	NA	NA	891	NM_001289655	225288	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0.130000	0.810945	
mm_78651.1	chr9	40333372	40333572	+	1	NA	NA	NA	0	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.045000	0.582090	
mm_96965.1	chr11	70647497	70647697	+	1	NA	NA	NA	310	NM_027445	70510	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0.025000	0.477612	
mm_126711.1	chr15	85241942	85242142	+	1	NA	NA	NA	36034	NM_010180	14114	Mm.297992	NM_010180	ENSMUSG00000006369	Fbln1	-	fibulin 1	protein-coding	0.025000	0.582090	
mm_102152.1	chr11	53675896	53676096	-	1	NA	NA	NA	31323	NM_009012	19360	Mm.4888	NM_009012	ENSMUSG00000020380	Rad50	Mrell|Rad50l	RAD50 double strand break repair protein	protein-coding	0.000000	0.353234	
mm_171505.1	chr4	146270264	146270464	+	1	NA	NA	NA	-21	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.040000	0.517413	
mm_67679.1	chr7	89338495	89338695	-	1	NA	NA	NA	192	NM_028343	72759	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.100000	0.691542	
mm_147903.1	chr18	65381808	65382008	-	1	NA	NA	NA	11980	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.020000	0.547264	
mm_24238.1	chr3	88984797	88984997	+	1	NA	NA	NA	19085	NM_138679	192195	Mm.130752	NM_138679	ENSMUSG00000028053	Ash1l	8030453L17Rik|Ash1|E430018P19Rik|Kmt2h	ash1 (absent, small, or homeotic)-like (Drosophila)	protein-coding	0.010000	0.447761	2(CCTTTTATGCAC,+,0.00)
mm_97943.1	chr11	83663376	83663576	+	1	NA	NA	NA	892	NM_013652	20303	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.005000	0.472637	
mm_37060.1	chr4	116053378	116053578	-	1	NA	NA	NA	398	NM_028142	72181	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	0.035000	0.487562	
mm_53951.1	chr6	5256185	5256385	-	1	NA	NA	NA	-52	NM_173006	269823	Mm.9122	NM_173006	ENSMUSG00000029759	Pon3	2810004E20|AI786302	paraoxonase 3	protein-coding	0.030000	0.611940	
mm_19226.1	chr2	84670538	84670738	-	1	NA	NA	NA	70	NM_001033166	72657	Mm.259293	NM_001033166	ENSMUSG00000076437	Selenoh	2700094K13Rik|Selh	selenoprotein H	protein-coding	0.075000	0.597015	
mm_89311.1	chr10	87921497	87921697	+	1	NA	NA	NA	-45074	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.010000	0.388060	
mm_110017.1	chr12	16646913	16647113	-	1	NA	NA	NA	-6457	NM_008747	18217	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT2R|NTRL	neurotensin receptor 2	protein-coding	0.020000	0.572139	
mm_52424.1	chr6	113472164	113472364	+	1	NA	NA	NA	809	NM_134159	171095	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	0.025000	0.621891	
mm_101808.1	chr11	46363745	46363945	-	1	NA	NA	NA	25670	NM_001281968	16428	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	0.015000	0.497512	
mm_136472.1	chr16	95749175	95749375	-	1	NA	NA	NA	46868	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.010000	0.532338	
mm_3867.1	chr1	160989377	160989577	+	1	NA	NA	NA	10871	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.050000	0.587065	
mm_104625.1	chr11	97310181	97310381	-	1	NA	NA	NA	-5435	NM_025927	67036	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.040000	0.512438	
mm_75613.1	chr8	62123216	62123416	-	1	NA	NA	NA	-123	NM_011922	26359	Mm.42179	NM_011922	ENSMUSG00000031635	Anxa10	-	annexin A10	protein-coding	0.005000	0.333333	
mm_62195.1	chr7	97735110	97735310	+	1	NA	NA	NA	3037	NM_175105	66333	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.025000	0.492537	
mm_8038.1	chr1	135257604	135257804	-	1	NA	NA	NA	768	NM_001163131	13710	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0.015000	0.542289	
mm_22266.1	chr2	178414326	178414526	-	1	NA	NA	NA	37	NM_001085501	228966	Mm.472736	NM_001085501	ENSMUSG00000049999	Ppp1r3d	2610024M03Rik|Gm359	protein phosphatase 1, regulatory subunit 3D	protein-coding	0.135000	0.736318	
mm_42113.1	chr5	110629957	110630157	+	1	NA	NA	NA	23325	NM_153570	100608	Mm.29960	NM_153570	ENSMUSG00000033294	Noc4l	AI326906	NOC4 like	protein-coding	0.015000	0.547264	
mm_55154.1	chr6	51469773	51469973	-	1	NA	NA	NA	21	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.110000	0.641791	
mm_120308.1	chr14	63141712	63141912	+	1	NA	NA	NA	19350	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.015000	0.532338	
mm_113869.1	chr13	48662432	48662632	+	1	NA	NA	NA	-504	NM_007526	12022	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	0.045000	0.606965	
mm_83544.1	chr9	46235548	46235748	-	1	NA	NA	NA	-12	NM_001289756	11814	Mm.390161	NM_023114	ENSMUSG00000032081	Apoc3	apo-CIII|apoC-III	apolipoprotein C-III	protein-coding	0.005000	0.577114	
mm_3316.1	chr1	137906715	137906915	+	1	NA	NA	NA	-59640	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.005000	0.417910	
mm_164372.1	chr16	24452816	24453016	-	1	NA	NA	NA	4825	NM_001145952	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.000000	0.482587	
mm_111461.1	chr12	98419992	98420192	-	1	NA	NA	NA	-103752	NR_136759	105245437	Mm.446375	NR_136759		Gm40893	-	predicted gene, 40893	ncRNA	0.020000	0.537313	
mm_102085.1	chr11	52281750	52281950	-	1	NA	NA	NA	745	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.025000	0.497512	
mm_58904.1	chr7	17163614	17163814	+	1	NA	NA	NA	13314	NM_054059	384557	Mm.486145	NM_054059	ENSMUSG00000053228	Ceacam3	EG384557|Psg24|cea12	carcinoembryonic antigen-related cell adhesion molecule 3	protein-coding	0.010000	0.447761	
mm_126196.1	chr15	78842542	78842742	+	1	NA	NA	NA	-5	NM_027219	104445	Mm.307488	NM_027219	ENSMUSG00000049521	Cdc42ep1	1810058K22Rik|AA980734|Borg5|CEP1|MSE55	CDC42 effector protein (Rho GTPase binding) 1	protein-coding	0.175000	0.835821	
mm_139411.1	chr17	52602609	52602809	+	1	NA	NA	NA	0	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.035000	0.597015	
mm_12166.1	chr2	62397846	62398046	+	1	NA	NA	NA	14285	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.000000	0.497512	
mm_123097.1	chr14	55788719	55788919	-	1	NA	NA	NA	38	NM_001164107	56532	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0.040000	0.552239	
mm_120676.1	chr14	70571026	70571226	+	1	NA	NA	NA	-6721	NM_153136	213484	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	0.005000	0.547264	
mm_144820.1	chr18	36292526	36292726	+	1	NA	NA	NA	-7475	NM_001267796	109169	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	0.000000	0.383085	
mm_39931.1	chr5	31613925	31614125	+	1	NA	NA	NA	74	NM_025796	66845	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0.110000	0.681592	
mm_158946.1	chr1	85109731	85109931	-	1	NA	NA	NA	22	NM_213615	381287	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.015000	0.502488	
mm_144922.1	chr18	37674234	37674434	+	1	NA	NA	NA	-1	NM_033586	93711	Mm.247203	NM_033586	ENSMUSG00000104346	Pcdhga3	-	protocadherin gamma subfamily A, 3	protein-coding	0.025000	0.487562	
mm_50205.1	chr6	42245898	42246098	+	1	NA	NA	NA	63	NM_029555	76263	Mm.267014	NM_029555	ENSMUSG00000029864	Gstk1	0610025I19Rik|AW260476|DsbA-L	glutathione S-transferase kappa 1	protein-coding	0.065000	0.587065	
mm_50264.1	chr6	44792828	44793028	+	1	NA	NA	NA	-267133	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.035000	0.383085	
mm_67263.1	chr7	75776689	75776889	-	1	NA	NA	NA	-71549	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.015000	0.472637	
mm_20623.1	chr2	131859727	131859927	-	1	NA	NA	NA	-80	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	0.015000	0.457711	46(GCCTTTATAAAC,+,0.00),46(GCCTTTATAAAC,-,0.00),48(CTTTATAAACCC,+,0.00)
mm_86073.1	chr9	114778725	114778925	-	1	NA	NA	NA	3168	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.000000	0.487562	
mm_43433.1	chr5	136083930	136084130	+	1	NA	NA	NA	114	NM_001039103	54153	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.085000	0.711443	
mm_120084.1	chr14	57798099	57798299	+	1	NA	NA	NA	10	NM_009119	20220	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	0.140000	0.651741	
mm_15066.1	chr2	153051672	153051872	+	1	NA	NA	NA	-14183	NM_145536	228788	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	0.020000	0.512438	
mm_56450.1	chr6	97617467	97617667	-	1	NA	NA	NA	90	NM_145148	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.085000	0.701493	
mm_122698.1	chr14	52095703	52095903	-	1	NA	NA	NA	8225	NM_001170982	15381	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	0.000000	0.323383	86(TACTATATAAGA,-,0.00)
mm_17921.1	chr2	35442039	35442239	-	1	NA	NA	NA	19310	NM_001308299	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.015000	0.512438	
mm_119547.1	chr14	48446285	48446485	+	1	NA	NA	NA	33	NR_132324	218989	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	0.150000	0.761194	
mm_82931.1	chr9	35175954	35176154	-	1	NA	NA	NA	-67	NM_027030	69305	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	0.080000	0.606965	
mm_129612.1	chr15	79958318	79958518	-	1	NA	NA	NA	-25772	NM_144811	52609	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	0.005000	0.497512	
mm_132950.1	chr16	49911897	49912097	+	1	NA	NA	NA	56343	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.015000	0.507463	
mm_24045.1	chr3	87847042	87847242	+	1	NA	NA	NA	387	NM_021309	27371	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	0.005000	0.547264	
mm_111222.1	chr12	84583049	84583249	-	1	NA	NA	NA	13321	NM_001301427	12677	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	0.005000	0.512438	-36(GACCATAAAAAG,-,0.00),-34(CCATAAAAAGGG,+,0.00)
mm_138302.1	chr17	34639695	34639895	+	1	NA	NA	NA	-5088	NM_019873	56299	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0.005000	0.467662	
mm_170161.1	chr17	51879747	51879947	-	1	NA	NA	NA	-2880	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.010000	0.442786	
mm_74932.1	chr8	25754288	25754488	-	1	NA	NA	NA	-108	NM_028102	72108	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	0.130000	0.726368	
mm_93266.1	chr10	95722250	95722450	-	1	NA	NA	NA	-158183	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.040000	0.572139	
mm_1470.1	chr1	69916967	69917167	+	1	NA	NA	NA	-34548	NM_025728	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	0.000000	0.402985	
mm_66099.1	chr7	31037764	31037964	-	1	NA	NA	NA	2453	NR_106017	102465635		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.010000	0.527363	
mm_1773.1	chr1	78309462	78309662	+	1	NA	NA	NA	-784	NM_001004173	433323	Mm.276248	NM_001004173	ENSMUSG00000032908	Sgpp2	SPPase2|Spp2	sphingosine-1-phosphate phosphotase 2	protein-coding	0.020000	0.522388	
mm_96778.1	chr11	69940012	69940212	+	1	NA	NA	NA	3784	NM_001347634	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.060000	0.621891	
mm_83234.1	chr9	42399197	42399397	-	1	NA	NA	NA	632	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.025000	0.497512	
mm_143420.1	chr17	70844713	70844913	-	1	NA	NA	NA	1964	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.015000	0.517413	
mm_14253.1	chr2	128128626	128128826	+	1	NA	NA	NA	1151	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.040000	0.636816	
mm_70801.1	chr8	22938101	22938301	+	1	NA	NA	NA	-36635	NM_001110783	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.020000	0.447761	
mm_109089.1	chr12	104683376	104683576	+	1	NA	NA	NA	68476	NM_148948	192119	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	0.015000	0.542289	
mm_76707.1	chr8	94599610	94599810	-	1	NA	NA	NA	2016	NM_028221	102122	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	0.010000	0.358209	
mm_57914.1	chr6	133849780	133849980	-	1	NA	NA	NA	3787	NM_010594	16483	Mm.13052	NM_010594	ENSMUSG00000032758	Kap	AW146435|FKSG22	kidney androgen regulated protein	protein-coding	0.020000	0.427861	
mm_134983.1	chr16	32099583	32099783	-	1	NA	NA	NA	44	NM_001111025	72084	Mm.37613	NM_024464	ENSMUSG00000023791	Pigx	2010319C14Rik|PIG-X	phosphatidylinositol glycan anchor biosynthesis, class X	protein-coding	0.100000	0.681592	
mm_31244.1	chr4	44879910	44880110	+	1	NA	NA	NA	-101384	NM_080289	76238	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0.005000	0.283582	-7(TTTTTTATAGTA,+,0.00)
mm_166525.1	chr6	24597988	24598188	+	1	NA	NA	NA	317	NM_053098	93677	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	0.025000	0.522388	
mm_25936.1	chr3	131466572	131466772	+	1	NA	NA	NA	-98096	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.005000	0.592040	
mm_83571.1	chr9	46416068	46416268	-	1	NA	NA	NA	-96182	NM_183104	74361	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding	0.010000	0.552239	-36(CACTATAAAAGG,-,0.00)
mm_73667.1	chr8	111056471	111056671	+	1	NA	NA	NA	232	NM_028274	72544	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	0.150000	0.786070	
mm_15800.1	chr2	164460939	164461139	+	1	NA	NA	NA	68	NM_025575	66460	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0.110000	0.691542	
mm_169995.1	chr1	71629378	71629578	-	1	NA	NA	NA	23756	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.030000	0.537313	
mm_101601.1	chr11	34771329	34771529	-	1	NA	NA	NA	12476	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.015000	0.572139	
mm_149389.1	chr19	11386634	11386834	+	1	NA	NA	NA	11246	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.000000	0.328358	
mm_8047.1	chr1	135372219	135372419	-	1	NA	NA	NA	2744	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.015000	0.567164	
mm_63226.1	chr7	126408351	126408551	+	1	NA	NA	NA	6419	NM_009844	12478	Mm.4360	NM_009844	ENSMUSG00000030724	Cd19	AW495831	CD19 antigen	protein-coding	0.010000	0.517413	
mm_123716.1	chr14	70056893	70057093	-	1	NA	NA	NA	-20452	NM_018781	13655	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.005000	0.552239	
mm_19902.1	chr2	114146973	114147173	-	1	NA	NA	NA	3497	NR_105968	102465982		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	0.030000	0.497512	
mm_58792.1	chr7	16130253	16130453	+	1	NA	NA	NA	527	NM_148946	110891	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	0.090000	0.741294	
mm_8566.1	chr1	155417247	155417447	-	1	NA	NA	NA	97	NM_011273	19775	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.110000	0.731343	
mm_3829.1	chr1	159523786	159523986	+	1	NA	NA	NA	117	NM_022312	21960	Mm.44701	NM_022312	ENSMUSG00000015829	Tnr	J1-tenascin|TN-R|janusin|restrictin	tenascin R	protein-coding	0.030000	0.542289	
mm_169413.1	chr14	52769630	52769830	+	1	NA	NA	NA	-274035	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.000000	0.447761	
mm_142705.1	chr17	47878828	47879028	-	1	NA	NA	NA	-44237	NM_001109973	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.075000	0.666667	
mm_25860.1	chr3	129836553	129836753	+	1	NA	NA	NA	-86	NM_001329552	12630	Mm.117180	NM_007686	ENSMUSG00000058952	Cfi	-	complement component factor i	protein-coding	0.005000	0.328358	
mm_102351.1	chr11	58204824	58205024	-	1	NA	NA	NA	5368	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.010000	0.492537	
mm_59596.1	chr7	28139634	28139834	+	1	NA	NA	NA	10268	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.015000	0.601990	
mm_166730.1	chr6	122570790	122570990	-	1	NA	NA	NA	17081	NM_009645	11628	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.010000	0.467662	
mm_125812.1	chr15	74931743	74931943	+	1	NA	NA	NA	-23208	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.005000	0.562189	
mm_30770.1	chr4	17853205	17853405	+	1	NA	NA	NA	-153	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.070000	0.661692	
mm_129018.1	chr15	74930409	74930609	-	1	NA	NA	NA	-24542	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.020000	0.517413	
mm_164556.1	chr17	14398848	14399048	-	1	NA	NA	NA	-6	NR_027986	74917	Mm.32228	NM_183107		4930474M22Rik	-	RIKEN cDNA 4930474M22 gene	ncRNA	0.020000	0.417910	-32(TTCTTTTAAAGC,-,0.00),-31(TCTTTTAAAGCT,+,0.00)
mm_133199.1	chr16	73045241	73045441	+	1	NA	NA	NA	382192	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.000000	0.283582	-2(TGGTTTTAAAAG,-,0.00),-1(GGTTTTAAAAGC,-,0.00),0(GTTTTAAAAGCA,+,0.00)
mm_151945.1	chr19	5800943	5801143	-	1	NA	NA	NA	1629	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.040000	0.542289	
mm_56134.1	chr6	87722648	87722848	-	1	NA	NA	NA	-8121	NM_001159697	58229	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.040000	0.601990	
mm_128383.1	chr15	42680583	42680783	-	1	NA	NA	NA	-3706	NM_009640	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.010000	0.402985	
mm_124657.1	chr15	5495715	5495915	+	1	NA	NA	NA	-503	NR_045274	71432	Mm.291087	NR_045274		5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.010000	0.462687	54(GCATATTTAAGC,-,0.00)
mm_121682.1	chr14	13170620	13170820	-	1	NA	NA	NA	113918	NR_121589	328354	Mm.252404	NM_177813	ENSMUSG00000051729	Gm5087	C630025C03|EG328354	predicted gene 5087	ncRNA	0.015000	0.412935	-33(ATGTTTATAAGC,-,0.00),30(GTCTCTATAAGG,-,0.00)
mm_115674.1	chr13	12650238	12650438	-	1	NA	NA	NA	57	NR_003568	664862	Mm.415635	NR_003568		Gpr137b-ps	2310041G17Rik|ENSMUSG00000075118	G protein-coupled receptor 137B, pseudogene	pseudo	0.110000	0.696517	
mm_22690.1	chr3	17790027	17790227	+	1	NA	NA	NA	206	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.020000	0.378109	-11(TTTTTTAAAGCA,+,0.00),77(GGGTTTTTAAGC,-,0.00),79(GTTTTTAAGCTC,+,0.00)
mm_172120.1	chr6	3201077	3201277	+	1	NA	NA	NA	-87342	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.085000	0.567164	
mm_54974.1	chr6	48738859	48739059	-	1	NA	NA	NA	-88	NM_175860	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.015000	0.437811	-30(GCTTAAAGAGAC,+,0.00)
mm_83004.1	chr9	36730963	36731163	-	1	NA	NA	NA	-4405	NM_007691	12649	Mm.16753	NM_007691	ENSMUSG00000032113	Chek1	C85740|Chk1|rad27	checkpoint kinase 1	protein-coding	0.005000	0.303483	
mm_63503.1	chr7	127841622	127841822	+	1	NA	NA	NA	-86	NM_009294	20909	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.095000	0.701493	
mm_84504.1	chr9	67022552	67022752	-	1	NA	NA	NA	21219	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.025000	0.383085	
mm_88587.1	chr10	79710735	79710935	+	1	NA	NA	NA	-5799	NM_008226	15166	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	0.045000	0.597015	
mm_11258.1	chr2	29935356	29935556	+	1	NA	NA	NA	47	NM_028923	74412	Mm.275121	NM_028923	ENSMUSG00000019715	Gle1	4933405K21Rik|AA553313|Gle1l	GLE1 RNA export mediator (yeast)	protein-coding	0.110000	0.661692	
mm_168501.1	chr11	53200560	53200760	+	1	NA	NA	NA	-80604	NR_046047	790909	Mm.404626	NR_046047	ENSMUSG00000087668	Gm11186	OTTMUSG00000000039	predicted gene 11186	ncRNA	0.015000	0.492537	
mm_135793.1	chr16	57191143	57191343	-	1	NA	NA	NA	-23911	NM_023175	52633	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.015000	0.412935	
mm_138255.1	chr17	34590421	34590621	+	1	NA	NA	NA	715	NM_134116	106512	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.020000	0.582090	
mm_167938.1	chrX	112521683	112521883	+	1	NA	NA	NA	26509	NM_001168590	67715	Mm.45323	NM_026333	ENSMUSG00000025528	2010106E10Rik	-	RIKEN cDNA 2010106E10 gene	protein-coding	0.005000	0.283582	
mm_23844.1	chr3	82876602	82876802	+	1	NA	NA	NA	-3	NR_040382	78212	Mm.399202	NR_040381	ENSMUSG00000086273	Rbm46os	4930444E23Rik|4930564K09Rik|Lratos	RNA binding motif protein 46, opposite strand	ncRNA	0.035000	0.492537	39(CCCTTAAGGGAG,+,0.00)
mm_168796.1	chr12	19606532	19606732	+	1	NA	NA	NA	1092122	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.135000	0.766169	
mm_153360.1	chr19	40180365	40180565	-	1	NA	NA	NA	6821	NM_145499	226105	Mm.29119	NM_145499	ENSMUSG00000060613	Cyp2c70	-	cytochrome P450, family 2, subfamily c, polypeptide 70	protein-coding	0.020000	0.393035	
mm_46565.1	chr5	107130517	107130717	-	1	NA	NA	NA	158978	NM_011578	21814	Mm.200775	NM_011578	ENSMUSG00000029287	Tgfbr3	1110036H20Rik|AU015626|AW215636|TBRIII	transforming growth factor, beta receptor III	protein-coding	0.025000	0.552239	
mm_105765.1	chr11	109611227	109611427	-	1	NA	NA	NA	62	NM_145940	52639	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0.120000	0.731343	
mm_28983.1	chr3	101280197	101280397	-	1	NA	NA	NA	7642	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.015000	0.507463	
mm_71072.1	chr8	34154574	34154774	+	1	NA	NA	NA	111	NM_026432	67887	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	0.110000	0.681592	-36(CCTTTTATGGTG,+,0.00)
mm_133117.1	chr16	65664991	65665191	+	1	NA	NA	NA	-102394	NM_026879	68942	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0.005000	0.547264	
mm_30790.1	chr4	19584651	19584851	+	1	NA	NA	NA	9685	NM_025476	66302	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	0.000000	0.288557	
mm_93274.1	chr10	95842790	95842990	-	1	NA	NA	NA	-97773	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.025000	0.442786	
mm_25178.1	chr3	103279647	103279847	+	1	NA	NA	NA	454	NM_001079830	94093	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.215000	0.800995	
mm_15596.1	chr2	160645902	160646102	+	1	NA	NA	NA	105	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.115000	0.641791	-55(CCATTTAAAAGC,+,0.00),-55(CCATTTAAAAGC,-,0.00)
mm_21353.1	chr2	157121873	157122073	-	1	NA	NA	NA	13249	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.020000	0.477612	
mm_140452.1	chr17	88626661	88626861	+	1	NA	NA	NA	206	NM_029858	77057	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.035000	0.517413	
mm_117798.1	chr13	97206933	97207133	-	1	NA	NA	NA	-8676	NM_010422	15212	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.010000	0.472637	
mm_48358.1	chr5	139382801	139383001	-	1	NA	NA	NA	2234	NM_030258	80290	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|PGR8	G protein-coupled receptor 146	protein-coding	0.015000	0.522388	
mm_94120.1	chr10	128642835	128643035	-	1	NA	NA	NA	3058	NM_011772	22781	Mm.358648	NM_011772	ENSMUSG00000002578	Ikzf4	A630026H08Rik|Eos|Zfpn1a4|Znfn1a4	IKAROS family zinc finger 4	protein-coding	0.025000	0.577114	
mm_36341.1	chr4	72852535	72852735	-	1	NA	NA	NA	-1	NM_001199270	353204	Mm.317892	NM_001199270	ENSMUSG00000059343	Aldoart1	4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2	aldolase 1 A, retrogene 1	protein-coding	0.045000	0.562189	
mm_34018.1	chr4	138013917	138014117	+	1	NA	NA	NA	20561	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.005000	0.283582	
mm_113414.1	chr13	34010571	34010771	+	1	NA	NA	NA	7797	NM_009068	19766	Mm.374799	NM_009068	ENSMUSG00000021408	Ripk1	D330015H01Rik|RIP|Rinp|Rip1	receptor (TNFRSF)-interacting serine-threonine kinase 1	protein-coding	0.020000	0.497512	
mm_116944.1	chr13	56128217	56128417	-	1	NA	NA	NA	7233	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.035000	0.597015	
mm_67417.1	chr7	80232697	80232897	-	1	NA	NA	NA	8	NM_001291276	23991	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0.120000	0.756219	
mm_59306.1	chr7	25268307	25268507	+	1	NA	NA	NA	708	NM_001302811	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.065000	0.582090	
mm_75848.1	chr8	70647030	70647230	-	1	NA	NA	NA	12608	NM_023217	66522	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0.005000	0.462687	-3(CTTTATATGCAG,+,0.00)
mm_116023.1	chr13	24937538	24937738	-	1	NA	NA	NA	23	NM_172532	214579	Mm.393311	NM_172532	ENSMUSG00000035936	Aldh5a1	6330403E24Rik|Ahd-1|Ahd1|D630032B01Rik|OTTMUSG00000000613|SSADH|Ssdh1	aldhehyde dehydrogenase family 5, subfamily A1	protein-coding	0.115000	0.706468	
mm_102863.1	chr11	69405145	69405345	-	1	NA	NA	NA	-7011	NM_025915	67020	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.015000	0.611940	
mm_145308.1	chr18	53862015	53862215	+	1	NA	NA	NA	2	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.090000	0.567164	
mm_25193.1	chr3	103576040	103576240	+	1	NA	NA	NA	14	NM_001276681	54524	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	0.095000	0.721393	
mm_171495.1	chr4	146157142	146157342	+	1	NA	NA	NA	415	NM_001177546	667666	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164|OTTMUSG00000010694	zinc finger protein 600	protein-coding	0.005000	0.442786	
mm_29663.1	chr3	122590105	122590305	-	1	NA	NA	NA	29509	NM_001114665	214459	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	0.015000	0.358209	
mm_145794.1	chr18	65246066	65246266	+	1	NA	NA	NA	-2695	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.010000	0.388060	-49(CCTTTTAAGTCT,+,0.00)
mm_61721.1	chr7	81843132	81843332	+	1	NA	NA	NA	-13801	NM_146193	83962	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	0.005000	0.517413	
mm_86535.1	chr10	7858498	7858698	+	1	NA	NA	NA	22217	NR_039563	100628581		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0.000000	0.373134	
mm_29473.1	chr3	115682587	115682787	-	1	NA	NA	NA	32368	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.015000	0.477612	
mm_52336.1	chr6	110645838	110646038	+	1	NA	NA	NA	340	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.105000	0.691542	
mm_164639.1	chr17	34804217	34804417	-	1	NA	NA	NA	109	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.025000	0.621891	
mm_15512.1	chr2	158258168	158258368	+	1	NA	NA	NA	27	NM_177850	329547	Mm.260883	NM_177850	ENSMUSG00000052922	Bpi	9230105K17Rik|Bpifd1	bactericidal permeablility increasing protein	protein-coding	0.025000	0.606965	
mm_73584.1	chr8	109868458	109868658	+	1	NA	NA	NA	-45	NM_001122594	244650	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0.135000	0.756219	
mm_140986.1	chr17	24724315	24724515	-	1	NA	NA	NA	-27	NM_026684	68342	Mm.1129	NM_026684	ENSMUSG00000040048	Ndufb10	0610011B04Rik|22kDa|PDSW	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10	protein-coding	0.080000	0.631841	
mm_11978.1	chr2	55292063	55292263	+	1	NA	NA	NA	-143807	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.015000	0.497512	
mm_146166.1	chr18	75183793	75183993	+	1	NA	NA	NA	113424	NR_045394	100503117	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.005000	0.378109	
mm_140150.1	chr17	80119130	80119330	+	1	NA	NA	NA	-8241	NM_176963	319625	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.010000	0.472637	
mm_156676.1	chrX	159303173	159303373	+	1	NA	NA	NA	47491	NM_001346675	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	0.025000	0.432836	
mm_104569.1	chr11	96943679	96943879	-	1	NA	NA	NA	240	NM_134021	103711	Mm.254704	NM_134021	ENSMUSG00000018659	Pnpo	AI415282	pyridoxine 5'-phosphate oxidase	protein-coding	0.085000	0.616915	
mm_45625.1	chr5	76182415	76182615	-	1	NA	NA	NA	-1365	NM_011626	21982	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0.010000	0.542289	
mm_64151.1	chr7	141328031	141328231	+	1	NA	NA	NA	1	NM_027797	71448	Mm.248960	NM_027797	ENSMUSG00000025505	Tmem80	5530601I19Rik	transmembrane protein 80	protein-coding	0.130000	0.686567	
mm_100739.1	chr11	4103699	4103899	-	1	NA	NA	NA	-8368	NM_026443	67900	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0.035000	0.572139	
mm_136711.1	chr17	7928258	7928458	+	1	NA	NA	NA	2358	NM_145968	72536	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik	T cell activation Rho GTPase activating protein	protein-coding	0.020000	0.457711	-75(GCGCATAAAAAC,-,0.00)
mm_79186.1	chr9	48407641	48407841	+	1	NA	NA	NA	45700	NM_172921	244853	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	0.025000	0.542289	
mm_122020.1	chr14	27508383	27508583	-	1	NA	NA	NA	-23	NM_177111	320234	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	0.075000	0.646766	
mm_116708.1	chr13	51026332	51026532	-	1	NA	NA	NA	74295	NR_029463	77428	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0.015000	0.422886	
mm_149130.1	chr19	9001691	9001891	+	1	NA	NA	NA	12507	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.040000	0.572139	
mm_172865.1	chr9	40804093	40804293	+	1	NA	NA	NA	2920	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.020000	0.462687	
mm_113546.1	chr13	37936897	37937097	+	1	NA	NA	NA	48126	NM_001177869	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.005000	0.358209	
mm_28490.1	chr3	92484214	92484414	-	1	NA	NA	NA	1567	NM_009264	20753	Mm.331191	NM_009264	ENSMUSG00000050359	Sprr1a	AI528815|SPR1a|mSPRR1A	small proline-rich protein 1A	protein-coding	0.010000	0.582090	
mm_15388.1	chr2	156720920	156721120	+	1	NA	NA	NA	55	NM_001042488	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.165000	0.791045	
mm_83927.1	chr9	56635513	56635713	-	1	NA	NA	NA	35	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.150000	0.800995	
mm_58174.1	chr6	142702476	142702676	-	1	NA	NA	NA	-302	NM_001310143	20928	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0.035000	0.582090	
mm_125220.1	chr15	34083232	34083432	+	1	NA	NA	NA	613	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.100000	0.641791	
mm_80996.1	chr9	103423048	103423248	+	1	NA	NA	NA	-430	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.045000	0.537313	
mm_162536.1	chr1	167285123	167285323	-	1	NA	NA	NA	-96	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.095000	0.706468	
mm_18923.1	chr2	76743674	76743874	-	1	NA	NA	NA	68459	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.015000	0.412935	
mm_62057.1	chr7	92447481	92447681	+	1	NA	NA	NA	-113568	NM_025515	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.015000	0.532338	
mm_8049.1	chr1	135373315	135373515	-	1	NA	NA	NA	1648	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.005000	0.532338	
mm_74883.1	chr8	25101504	25101704	-	1	NA	NA	NA	207	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.045000	0.606965	
mm_79598.1	chr9	58488024	58488224	+	1	NA	NA	NA	-479	NM_176921	319477	Mm.153674	NM_176921	ENSMUSG00000066607	6030419C18Rik	-	RIKEN cDNA 6030419C18 gene	protein-coding	0.165000	0.791045	-66(CGCTTTAAAAGC,-,0.00),-65(GCTTTAAAAGCT,+,0.00)
mm_130526.1	chr15	98895322	98895522	-	1	NA	NA	NA	3118	NM_007857	13363	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	0.030000	0.542289	
mm_121110.1	chr14	101654089	101654289	+	1	NA	NA	NA	222	NM_016723	50933	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	0.105000	0.711443	
mm_74892.1	chr8	25104605	25104805	-	1	NA	NA	NA	-2894	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.020000	0.487562	
mm_150530.1	chr19	39290666	39290866	+	1	NA	NA	NA	3681	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.005000	0.402985	
mm_78245.1	chr9	21640853	21641053	+	1	NA	NA	NA	24784	NM_001174078	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.005000	0.502488	
mm_91799.1	chr10	53629862	53630062	-	1	NA	NA	NA	477	NM_027830	71567	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0.130000	0.726368	
mm_113754.1	chr13	44731631	44731831	+	1	NA	NA	NA	460	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.030000	0.348259	
mm_30087.1	chr3	138143601	138143801	-	1	NA	NA	NA	163	NM_175389	108943	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	0.075000	0.616915	
mm_65529.1	chr7	25788444	25788644	-	1	NA	NA	NA	189	NM_001190974	26362	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.045000	0.671642	
mm_153766.1	chr19	45591874	45592074	-	1	NA	NA	NA	31359	NM_172639	226162	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	5330431N19Rik|Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.020000	0.527363	
mm_71066.1	chr8	34142763	34142963	+	1	NA	NA	NA	3876	NM_026609	68192	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	0.020000	0.507463	
mm_124464.1	chr14	121286855	121287055	-	1	NA	NA	NA	92275	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.045000	0.427861	
mm_23523.1	chr3	60617226	60617426	+	1	NA	NA	NA	116147	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.000000	0.343284	
mm_114502.1	chr13	70574352	70574552	+	1	NA	NA	NA	1211	NR_045934	73584	Mm.442491	NR_045934	ENSMUSG00000101051	1700100L14Rik	-	RIKEN cDNA 1700100L14 gene	ncRNA	0.000000	0.547264	
mm_86019.1	chr9	112235424	112235624	-	1	NA	NA	NA	-683	NM_001177619	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.090000	0.691542	
mm_52512.1	chr6	115361195	115361395	+	1	NA	NA	NA	151	NM_001308352	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.065000	0.641791	
mm_61146.1	chr7	57591069	57591269	+	1	NA	NA	NA	-4	NM_008071	14402	Mm.8004	NM_008071	ENSMUSG00000033676	Gabrb3	A230092K12Rik|AW049585|Cp1|Gabrb-3|beta3	gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	protein-coding	0.140000	0.850746	
mm_117441.1	chr13	74734144	74734344	-	1	NA	NA	NA	17	NM_001301158	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.010000	0.497512	
mm_161682.1	chr17	18085005	18085205	+	1	NA	NA	NA	48	NM_001104540	665210	Mm.469864	NM_001104540	ENSMUSG00000091206	Vmn2r91	EG665210	vomeronasal 2, receptor 91	protein-coding	0.000000	0.333333	
mm_55896.1	chr6	83536463	83536663	-	1	NA	NA	NA	-312	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.010000	0.562189	56(CAGCTTATAAGG,-,0.00),58(GCTTATAAGGCC,+,0.00)
mm_13834.1	chr2	119351128	119351328	+	1	NA	NA	NA	-14	NM_026929	69065	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	0.065000	0.601990	30(GGGTTTAAAGAG,-,0.00),32(GTTTAAAGAGCG,+,0.00)
mm_51864.1	chr6	90540710	90540910	+	1	NA	NA	NA	-10038	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.005000	0.592040	
mm_169242.1	chr13	74729014	74729214	+	1	NA	NA	NA	5147	NM_001301158	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.000000	0.497512	
mm_173117.1	chrX	160659142	160659342	-	1	NA	NA	NA	60730	NM_011147	237178	Mm.296779	NM_011147	ENSMUSG00000062168	Ppef1	PPEF-1	protein phosphatase with EF hand calcium-binding domain 1	protein-coding	0.010000	0.502488	
mm_1736.1	chr1	75435865	75436065	+	1	NA	NA	NA	22	NM_133708	69080	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	0.050000	0.552239	
mm_22875.1	chr3	29235829	29236029	+	1	NA	NA	NA	153352	NM_029412	75740	Mm.330948	NM_029412	ENSMUSG00000063600	Egfem1	6130401L20Rik|Efcab11	EGF-like and EMI domain containing 1	protein-coding	0.000000	0.348259	
mm_157582.1	chrX	53053173	53053373	-	1	NA	NA	NA	80	NR_029776	723910		NR_029776	ENSMUSG00000065503	Mir351	Mirn351|mmu-mir-351	microRNA 351	ncRNA	0.015000	0.447761	
mm_135111.1	chr16	35769455	35769655	-	1	NA	NA	NA	-199	NM_153550	224132	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0.055000	0.517413	
mm_87781.1	chr10	60296381	60296581	+	1	NA	NA	NA	12020	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.020000	0.562189	
mm_135591.1	chr16	50721444	50721644	-	1	NA	NA	NA	-5588	NR_105782	102466634		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA	0.020000	0.457711	
mm_171149.1	chr3	15793747	15793947	-	1	NA	NA	NA	54640	NM_001173459	100038947	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	0.015000	0.288557	
mm_115007.1	chr13	98316337	98316537	+	1	NA	NA	NA	530	NM_145455	218490	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	0.105000	0.726368	
mm_81654.1	chr9	110960732	110960932	+	1	NA	NA	NA	9287	NM_028838	74249	Mm.307615	NM_028838	ENSMUSG00000032495	Lrrc2	2400002D05Rik|4933431K03Rik	leucine rich repeat containing 2	protein-coding	0.015000	0.532338	
mm_17493.1	chr2	28620575	28620775	-	1	NA	NA	NA	1307	NM_008114	14582	Mm.373385	NM_008114	ENSMUSG00000026815	Gfi1b	Gfi-1B	growth factor independent 1B	protein-coding	0.030000	0.452736	
mm_58029.1	chr6	136662035	136662235	-	1	NA	NA	NA	-242	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.030000	0.557214	
mm_44682.1	chr5	30114549	30114749	-	1	NA	NA	NA	-8563	NM_001256263	433868	Mm.450696	NM_001256263	ENSMUSG00000086815	3110082J24Rik	ENSMUSG00000073106	RIKEN cDNA 3110082J24 gene	protein-coding	0.175000	0.771144	
mm_163632.1	chr13	58730650	58730850	+	1	NA	NA	NA	31561	NR_045469	67585	Mm.84751	NR_045469		4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	0.005000	0.552239	-62(TACCATAAAAGG,-,0.00),-60(CCATAAAAGGAC,+,0.00)
mm_165110.1	chr19	58143783	58143983	-	1	NA	NA	NA	92716	NR_049196	100885835		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0.000000	0.462687	
mm_165950.1	chr4	83527544	83527744	+	1	NA	NA	NA	2099	NM_001081012	320226	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	0.015000	0.353234	
mm_41334.1	chr5	90495880	90496080	+	1	NA	NA	NA	5266	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.020000	0.437811	
mm_103241.1	chr11	70687965	70688165	-	1	NA	NA	NA	40	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.095000	0.646766	-32(GCCTCTTTAGGG,-,0.00)
mm_145714.1	chr18	62977733	62977933	+	1	NA	NA	NA	-83	NM_028017	108123	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0.090000	0.606965	
mm_18994.1	chr2	76867947	76868147	-	1	NA	NA	NA	114500	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.020000	0.472637	
mm_156772.1	chrX	160780505	160780705	+	1	NA	NA	NA	12592	NM_011302	20147	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	0.000000	0.373134	
mm_59638.1	chr7	28157571	28157771	+	1	NA	NA	NA	-12077	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.045000	0.487562	
mm_82425.1	chr9	14903843	14904043	-	1	NA	NA	NA	8	NM_176807	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.010000	0.507463	
mm_119579.1	chr14	50870281	50870481	+	1	NA	NA	NA	173	NM_009351	21745	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	0.070000	0.641791	
mm_101856.1	chr11	48871049	48871249	-	1	NA	NA	NA	197	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding	0.025000	0.452736	
mm_76700.1	chr8	94375714	94375914	-	1	NA	NA	NA	-10686	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.005000	0.522388	
mm_96423.1	chr11	67256301	67256501	+	1	NA	NA	NA	18589	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.035000	0.547264	
mm_111375.1	chr12	87263805	87264005	-	1	NA	NA	NA	339	NM_134044	104799	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	0.020000	0.442786	
mm_13438.1	chr2	105126634	105126834	+	1	NA	NA	NA	205	NM_144783	22431	Mm.389339	NM_144783	ENSMUSG00000016458	Wt1	D630046I19Rik|Wt-1	Wilms tumor 1 homolog	protein-coding	0.080000	0.701493	
mm_23720.1	chr3	69005952	69006152	+	1	NA	NA	NA	1080	NM_133786	70099	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	0.095000	0.731343	
mm_96763.1	chr11	69915948	69916148	+	1	NA	NA	NA	1856	NM_019726	56310	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953	G protein pathway suppressor 2	protein-coding	0.010000	0.577114	
mm_162754.1	chr10	60299793	60299993	+	1	NA	NA	NA	15432	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.040000	0.597015	
mm_77260.1	chr8	115707208	115707408	-	1	NA	NA	NA	-414	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.150000	0.766169	
mm_66632.1	chr7	45521945	45522145	-	1	NA	NA	NA	4223	NM_008654	17872	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	0.070000	0.557214	
mm_58542.1	chr7	4521573	4521773	+	1	NA	NA	NA	770	NM_009406	21954	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0.020000	0.577114	
mm_5882.1	chr1	53914534	53914734	-	1	NA	NA	NA	65210	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.020000	0.537313	
mm_52446.1	chr6	113660545	113660745	+	1	NA	NA	NA	22178	NM_001113553	108960	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.030000	0.467662	-88(GTCTTTAAATAC,-,0.00),-86(CTTTAAATACTC,+,0.00)
mm_143025.1	chr17	56584216	56584416	-	1	NA	NA	NA	267	NM_001029979	224902	Mm.214973	NM_001029979	ENSMUSG00000042625	Safb2	AA389433|AI255170|mKIAA0138	scaffold attachment factor B2	protein-coding	0.115000	0.681592	
mm_54024.1	chr6	8778378	8778578	-	1	NA	NA	NA	6	NM_010492	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.050000	0.592040	
mm_59302.1	chr7	25218819	25219019	+	1	NA	NA	NA	940	NM_207677	67379	Mm.280594	NM_026117	ENSMUSG00000054499	Dedd2	2410050E11Rik|FLAME-3	death effector domain-containing DNA binding protein 2	protein-coding	0.105000	0.721393	
mm_60067.1	chr7	31291355	31291555	+	1	NA	NA	NA	361	NM_020563	57426	Mm.6205	NM_020563	ENSMUSG00000062556	Scgb1b2	Abpa2|Abph|Apbh|LGP|Mja1l|Scgb1b1	secretoglobin, family 1B, member 2	protein-coding	0.025000	0.427861	
mm_144685.1	chr18	34776944	34777144	+	1	NA	NA	NA	36	NM_001081256	277250	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	0.145000	0.810945	
mm_15205.1	chr2	154212904	154213104	+	1	NA	NA	NA	-10738	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.020000	0.597015	
mm_168493.1	chr1	150426431	150426631	+	1	NA	NA	NA	-33476	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.005000	0.417910	
mm_140490.1	chr17	3283156	3283356	-	1	NA	NA	NA	-43317	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.010000	0.457711	
mm_54549.1	chr6	36810042	36810242	-	1	NA	NA	NA	1219	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.030000	0.572139	
mm_115558.1	chr13	9172987	9173187	-	1	NA	NA	NA	79206	NM_172585	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.020000	0.383085	
mm_38814.1	chr4	148458778	148458978	-	1	NA	NA	NA	10296	NM_020009	56717	Mm.21158	NM_020009	ENSMUSG00000028991	Mtor	2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat	mechanistic target of rapamycin (serine/threonine kinase)	protein-coding	0.020000	0.577114	
mm_50202.1	chr6	42077829	42078029	+	1	NA	NA	NA	39535	NM_009299	20939	Mm.4119	NM_009299	ENSMUSG00000023289	Sva	-	seminal vesicle antigen	protein-coding	0.000000	0.378109	
mm_94333.1	chr11	4435786	4435986	+	1	NA	NA	NA	5196	NM_029458	75828	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0.020000	0.507463	
mm_162278.1	chr1	16665177	16665377	+	1	NA	NA	NA	86	NM_026392	70397	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	0.100000	0.666667	
mm_126013.1	chr15	76626120	76626320	+	1	NA	NA	NA	-136	NM_001305668	66914	Mm.30028	NM_025842	ENSMUSG00000059323	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	0.035000	0.462687	87(GCATTTAAAGAA,+,0.00)
mm_44222.1	chr5	4798995	4799195	-	1	NA	NA	NA	-40879	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.020000	0.472637	-34(GAGTATAAATAG,-,0.00)
mm_159868.1	chr5	145469623	145469823	-	1	NA	NA	NA	0	NM_007820	13114	Mm.378905	NM_007820	ENSMUSG00000038656	Cyp3a16	-	cytochrome P450, family 3, subfamily a, polypeptide 16	protein-coding	0.005000	0.487562	
mm_50666.1	chr6	51525414	51525614	+	1	NA	NA	NA	1611	NM_001127349	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.000000	0.368159	
mm_85057.1	chr9	90237517	90237717	-	1	NA	NA	NA	33152	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.015000	0.442786	
mm_157560.1	chrX	52165175	52165375	-	1	NA	NA	NA	-352	NM_008150	14735	Mm.1528	NM_008150	ENSMUSG00000031119	Gpc4	9530073D23Rik|AF311610|AI385680|AI661372|K-glypican	glypican 4	protein-coding	0.115000	0.726368	
mm_62015.1	chr7	91463781	91463981	+	1	NA	NA	NA	373095	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.288557	7(GTTTTTAGACAC,+,0.00)
mm_97934.1	chr11	83648443	83648643	+	1	NA	NA	NA	835	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.030000	0.507463	
mm_151050.1	chr19	47067645	47067845	+	1	NA	NA	NA	-3	NM_177342	226182	Mm.301522	NM_177342	ENSMUSG00000025049	Taf5	6330528C20Rik|AV117817	TATA-box binding protein associated factor 5	protein-coding	0.110000	0.681592	
mm_92864.1	chr10	81600772	81600972	-	1	NA	NA	NA	28	NM_053254	114606	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0.030000	0.696517	
mm_58181.1	chr6	142883736	142883936	-	1	NA	NA	NA	69605	NR_045707	665037	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037|ENSMUSG00000072683	predicted gene 7457	ncRNA	0.010000	0.477612	
mm_19535.1	chr2	94406572	94406772	-	1	NA	NA	NA	17	NM_183106	74569	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	0.105000	0.696517	
mm_27343.1	chr3	50414705	50414905	-	1	NA	NA	NA	28808	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.283582	
mm_107717.1	chr12	56253138	56253338	+	1	NA	NA	NA	-5	NR_045048	100503961	Mm.136732	NR_045048		Gm19990	-	predicted gene, 19990	ncRNA	0.015000	0.457711	
mm_159954.1	chr6	86413803	86414003	+	1	NA	NA	NA	9684	NM_001164078	21841	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	0.015000	0.398010	
mm_40451.1	chr5	53602320	53602520	+	1	NA	NA	NA	11934	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.025000	0.472637	-72(TCTTTTATAGTC,+,0.00)
mm_120652.1	chr14	70530900	70531100	+	1	NA	NA	NA	179	NM_145219	213469	Mm.41708	NM_145219	ENSMUSG00000033595	Lgi3	AI841179|AW049851	leucine-rich repeat LGI family, member 3	protein-coding	0.070000	0.706468	
mm_88337.1	chr10	75589241	75589441	+	1	NA	NA	NA	-40	NM_011820	23887	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	0.020000	0.552239	
mm_8610.1	chr1	156035913	156036113	-	1	NA	NA	NA	-23	NM_001160182	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.125000	0.651741	
mm_123553.1	chr14	66845558	66845758	-	1	NA	NA	NA	22942	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.020000	0.532338	-34(CCCCATAAATAG,-,0.00),-32(CCATAAATAGGA,+,0.00)
mm_142892.1	chr17	51833126	51833326	-	1	NA	NA	NA	64	NM_001163632	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.095000	0.726368	
mm_63301.1	chr7	126823655	126823855	+	1	NA	NA	NA	452	NM_029978	68952	Mm.440393	NM_026884	ENSMUSG00000058966	Fam57b	1500016O10Rik|A330104J06Rik|AI413816|AW060769	family with sequence similarity 57, member B	protein-coding	0.035000	0.686567	
mm_63480.1	chr7	127746188	127746388	+	1	NA	NA	NA	-487	NM_172748	233902	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.030000	0.646766	
mm_169856.1	chr16	3345781	3345981	+	1	NA	NA	NA	-246517	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.020000	0.482587	
mm_163867.1	chr14	19418958	19419158	+	1	NA	NA	NA	183529	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.010000	0.333333	
mm_79550.1	chr9	57940012	57940212	+	1	NA	NA	NA	-23	NM_011352	20361	Mm.335187	NM_011352	ENSMUSG00000038264	Sema7a	2900057C09Rik|CDw108|H-Sema-L|M-Sema-L|Semal	sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A	protein-coding	0.120000	0.746269	
mm_51927.1	chr6	91272377	91272577	+	1	NA	NA	NA	59713	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.005000	0.318408	-30(CATTTTAAAAGG,-,0.00)
mm_45033.1	chr5	39603429	39603629	-	1	NA	NA	NA	45	NR_045416	75095	Mm.332354	NR_045416	ENSMUSG00000106741	4930513D17Rik	-	RIKEN cDNA 4930513D17 gene	ncRNA	0.005000	0.427861	
mm_95344.1	chr11	48799956	48800156	+	1	NA	NA	NA	-304	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.060000	0.547264	
mm_141744.1	chr17	34186897	34187097	-	1	NA	NA	NA	333	NM_013585	16912	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	0.035000	0.557214	
mm_120927.1	chr14	76477023	76477223	+	1	NA	NA	NA	-11313	NM_001177751	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.000000	0.422886	
mm_47858.1	chr5	134563979	134564179	-	1	NA	NA	NA	-3908	NM_001013751	214292	Mm.425290	NM_001013751	ENSMUSG00000085957	Syna	Gm453|Gm52|syncytin-A	syncytin a	protein-coding	0.005000	0.567164	-27(TGCTCTATAAGC,-,0.00)
mm_3863.1	chr1	160987400	160987600	+	1	NA	NA	NA	8894	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.025000	0.592040	
mm_160947.1	chr11	96343848	96344048	+	1	NA	NA	NA	179	NM_010458	15410	Mm.342481	NM_010458	ENSMUSG00000048763	Hoxb3	Hox-2.7	homeobox B3	protein-coding	0.015000	0.348259	
mm_3882.1	chr1	161035750	161035950	+	1	NA	NA	NA	684	NR_002840	14455	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	0.005000	0.467662	
mm_64588.1	chr7	3164415	3164615	-	1	NA	NA	NA	4688	NM_001004153	245128	Mm.268551	NM_001004153	ENSMUSG00000054753	AU018091	-	expressed sequence AU018091	protein-coding	0.010000	0.532338	
mm_97360.1	chr11	77503781	77503981	+	1	NA	NA	NA	9392	NM_001024920	216964	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	0.015000	0.597015	
mm_66078.1	chr7	30946082	30946282	-	1	NA	NA	NA	-2153	NM_032541	84506	Mm.439939	NM_032541	ENSMUSG00000050440	Hamp	Hamp1|Hepc|Hepc1	hepcidin antimicrobial peptide	protein-coding	0.030000	0.606965	
mm_3565.1	chr1	150432367	150432567	+	1	NA	NA	NA	33698	NM_021400	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.020000	0.393035	
mm_168224.1	chr10	79442377	79442577	+	1	NA	NA	NA	-26481	NM_001104537	625029	Mm.469865	NM_001104537	ENSMUSG00000091381	Vmn2r83	EG625029	vomeronasal 2, receptor 83	protein-coding	0.055000	0.512438	-94(CCCTAGAAAAAG,-,0.00)
mm_38970.1	chr4	150902094	150902294	-	1	NA	NA	NA	7727	NM_020569	57320	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.040000	0.547264	
mm_16821.1	chr2	11473815	11474015	-	1	NA	NA	NA	28175	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.000000	0.527363	
mm_3165.1	chr1	135324739	135324939	+	1	NA	NA	NA	26	NM_053106	93689	Mm.180124	NM_053106	ENSMUSG00000048096	Lmod1	9530015K06Rik|SM-Lmod	leiomodin 1 (smooth muscle)	protein-coding	0.010000	0.587065	
mm_2475.1	chr1	105787973	105788173	+	1	NA	NA	NA	7350	NM_009399	21934	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.005000	0.472637	4(CCCTTTCAAGGC,+,0.00)
mm_129214.1	chr15	76522483	76522683	-	1	NA	NA	NA	-454	NM_130893	170729	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.080000	0.711443	-34(GGCTTTAAAAGC,-,0.00),-33(GCTTTAAAAGCC,+,0.00)
mm_48103.1	chr5	137069332	137069532	-	1	NA	NA	NA	2840	NM_008871	18787	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.020000	0.532338	
mm_4904.1	chr1	189879807	189880007	+	1	NA	NA	NA	42381	NM_026796	226830	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.005000	0.507463	
mm_14475.1	chr2	131498532	131498732	+	1	NA	NA	NA	6770	NM_001177838	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.020000	0.427861	
mm_171241.1	chr3	74242519	74242719	+	1	NA	NA	NA	-225342	NR_040450	100504692	Mm.394454	NR_040450	ENSMUSG00000104096	Gm20356	-	predicted gene, 20356	ncRNA	0.015000	0.437811	
mm_40095.1	chr5	34559016	34559216	+	1	NA	NA	NA	9540	NM_001145859	24055	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.030000	0.616915	-22(CCTCTAAAAGTC,+,0.00)
mm_35807.1	chr4	46649993	46650193	-	1	NA	NA	NA	106	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	0.100000	0.716418	
mm_11843.1	chr2	45133378	45133578	+	1	NA	NA	NA	-20199	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.005000	0.492537	-34(GCTCATAAAAGG,-,0.00)
mm_79052.1	chr9	46229124	46229324	+	1	NA	NA	NA	594	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.025000	0.547264	
mm_57849.1	chr6	129470718	129470918	-	1	NA	NA	NA	1961	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.005000	0.388060	
mm_86644.1	chr10	14522964	14523164	+	1	NA	NA	NA	21972	NM_001002268	215798	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.030000	0.427861	
mm_135445.1	chr16	45492878	45493078	-	1	NA	NA	NA	-9	NM_001005854	208166	Mm.451852	NM_001005854	ENSMUSG00000053182	Gm609	Gm1749|isec1	predicted gene 609	protein-coding	0.025000	0.393035	
mm_95624.1	chr11	53583827	53584027	+	1	NA	NA	NA	16558	NM_001290806	16568	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	0.030000	0.507463	
mm_75824.1	chr8	70487248	70487448	-	1	NA	NA	NA	10	NM_182991	67937	Mm.23002	NM_182991	ENSMUSG00000035964	Tmem59l	5330410G16Rik	transmembrane protein 59-like	protein-coding	0.090000	0.691542	
mm_143067.1	chr17	57021594	57021794	-	1	NA	NA	NA	9813	NM_010613	16549	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0.020000	0.462687	
mm_10984.1	chr2	26154214	26154414	+	1	NA	NA	NA	-13808	NM_001256521	109299	Mm.389259	NM_001256521		C330006A16Rik	AI551216	RIKEN cDNA C330006A16 gene	protein-coding	0.005000	0.532338	
mm_79797.1	chr9	64117073	64117273	+	1	NA	NA	NA	26	NM_145835	235435	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	0.000000	0.547264	
mm_111547.1	chr12	100923493	100923693	-	1	NA	NA	NA	-15395	NM_001177673	238377	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.015000	0.477612	
mm_83337.1	chr9	44268062	44268262	-	1	NA	NA	NA	25	NM_001163743	270151	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	0.100000	0.751244	
mm_63400.1	chr7	127297253	127297453	+	1	NA	NA	NA	1093	NM_001253874	16408	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.005000	0.562189	
mm_62439.1	chr7	101373225	101373425	+	1	NA	NA	NA	-4797	NM_001040112	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.060000	0.676617	
mm_116936.1	chr13	55836031	55836231	-	1	NA	NA	NA	-4706	NM_011097	18740	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.130000	0.736318	
mm_74753.1	chr8	19064822	19065022	-	1	NA	NA	NA	-112	NM_183038	360214	Mm.271559	NM_183038	ENSMUSG00000061847	Defb39	BD-39	defensin beta 39	protein-coding	0.005000	0.442786	
mm_153698.1	chr19	44397424	44397624	-	1	NA	NA	NA	10185	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.000000	0.487562	
mm_157131.1	chrX	9449598	9449798	-	1	NA	NA	NA	19626	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.015000	0.457711	
mm_56836.1	chr6	117179001	117179201	-	1	NA	NA	NA	10566	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.025000	0.507463	
mm_44458.1	chr5	22528613	22528813	-	1	NA	NA	NA	317	NR_004442	100042049	Mm.21724	NR_004442		Gm15421	OTTMUSG00000021442	ribosomal protein L22 like 1 pseudogene	pseudo	0.015000	0.452736	
mm_44382.1	chr5	17828542	17828742	-	1	NA	NA	NA	7254	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.015000	0.338308	
mm_137347.1	chr17	25162349	25162549	+	1	NA	NA	NA	-12	NM_001079929	207209	Mm.207121	NM_001079929	ENSMUSG00000059562	Ccdc154	Ccdc157|Gm317	coiled-coil domain containing 154	protein-coding	0.005000	0.517413	-79(GGGCATATGAGG,-,0.00)
mm_126074.1	chr15	77698807	77699007	+	1	NA	NA	NA	18	NM_001134802	666348	Mm.303207	NM_001134802	ENSMUSG00000071716	Apol7e	ENSMUSG00000071716	apolipoprotein L 7e	protein-coding	0.010000	0.492537	-32(GGGTATATAAGC,-,0.00)
mm_25957.1	chr3	132154821	132155021	+	1	NA	NA	NA	69629	NM_020265	56811	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.020000	0.398010	
mm_56859.1	chr6	118197292	118197492	-	1	NA	NA	NA	352	NM_009050	19713	Mm.57199	NM_009050	ENSMUSG00000030110	Ret	PTC|RET51|RET9|c-Ret	ret proto-oncogene	protein-coding	0.070000	0.716418	
mm_129184.1	chr15	76307164	76307364	-	1	NA	NA	NA	-19	NM_153122	75475	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0.045000	0.616915	
mm_139097.1	chr17	46910378	46910578	+	1	NA	NA	NA	-7	NM_008938	19133	Mm.291370	NM_008938	ENSMUSG00000023978	Prph2	AOFMD|AVMD|Nmf193|PRPH|RP7|Rd-2|Rd2|Rds|Tspan22|rds	peripherin 2	protein-coding	0.035000	0.527363	
mm_40810.1	chr5	71699834	71700034	+	1	NA	NA	NA	-82	NM_008069	14400	Mm.38567	NM_008069	ENSMUSG00000029212	Gabrb1	AW061132|B230208N19Rik|Gabrb-1	gamma-aminobutyric acid (GABA) A receptor, subunit beta 1	protein-coding	0.030000	0.452736	
mm_108857.1	chr12	98747364	98747564	+	1	NA	NA	NA	496	NM_029334	75553	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.055000	0.522388	18(TGCCATTAAGGG,-,0.00)
mm_116994.1	chr13	56548381	56548581	-	1	NA	NA	NA	57	NM_010702	16841	Mm.16973	NM_010702	ENSMUSG00000021539	Lect2	-	leukocyte cell-derived chemotaxin 2	protein-coding	0.030000	0.492537	
mm_11307.1	chr2	30266439	30266639	+	1	NA	NA	NA	-182	NM_001281829	227696	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	0.015000	0.487562	
mm_9643.1	chr1	177207318	177207518	-	1	NA	NA	NA	41349	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.000000	0.263682	
mm_72582.1	chr8	84204196	84204396	+	1	NA	NA	NA	-4222	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.025000	0.567164	
mm_8344.1	chr1	150165713	150165913	-	1	NA	NA	NA	-865	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.015000	0.422886	-71(GATTTTAAAAAG,-,0.00)
mm_128719.1	chr15	64015432	64015632	-	1	NA	NA	NA	44916	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.025000	0.467662	
mm_160489.1	chr8	126298370	126298570	+	1	NA	NA	NA	-109	NM_175434	210027	Mm.405238	NM_175434	ENSMUSG00000057060	Slc35f3	B230375D17Rik	solute carrier family 35, member F3	protein-coding	0.095000	0.706468	
mm_4689.1	chr1	180725911	180726111	+	1	NA	NA	NA	-32	NM_133225	170760	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.130000	0.736318	
mm_26411.1	chr3	142608187	142608387	+	1	NA	NA	NA	-12376	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.000000	0.452736	
mm_68847.1	chr7	126368438	126368638	-	1	NA	NA	NA	-493	NR_106025	102466797		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.020000	0.577114	
mm_1094.1	chr1	59705549	59705749	+	1	NA	NA	NA	841	NR_028521	100217421		NR_028521		Snord11	MBII-95	small nucleolar RNA, C/D box 11	snoRNA	0.005000	0.348259	
mm_56916.1	chr6	119388605	119388805	-	1	NA	NA	NA	28778	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.205000	0.815920	
mm_120244.1	chr14	62992269	62992469	+	1	NA	NA	NA	-5708	NM_001039125	654465	Mm.424929	NM_001039125	ENSMUSG00000075573	Defb47	Defb41|EG654465	defensin beta 47	protein-coding	0.010000	0.502488	
mm_21817.1	chr2	165283618	165283818	-	1	NA	NA	NA	4069	NM_001252574	228875	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.005000	0.537313	
mm_122672.1	chr14	51988735	51988935	-	1	NA	NA	NA	-6	NR_045728	100502764	Mm.437219	NR_045728	ENSMUSG00000097633	Gm16617	-	predicted gene, 16617	ncRNA	0.020000	0.651741	
mm_94448.1	chr11	6388996	6389196	+	1	NA	NA	NA	-6029	NM_001005867	52915	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.085000	0.746269	
mm_21354.1	chr2	157123240	157123440	-	1	NA	NA	NA	11882	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.045000	0.507463	
mm_4176.1	chr1	171123047	171123247	+	1	NA	NA	NA	1486	NM_001081275	75472	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.015000	0.512438	
mm_159431.1	chr3	113323929	113324129	-	1	NA	NA	NA	23	NM_001160151	100043686	Mm.275426	NM_001160151	ENSMUSG00000093931	Amy2a3	OTTMUSG00000022430|mAmy2-4	amylase 2a3	protein-coding	0.010000	0.303483	
mm_155497.1	chrX	73765452	73765652	+	1	NA	NA	NA	8449	NM_019587	140571	Mm.275600	NM_019587	ENSMUSG00000031385	Plxnb3	AI451018|Plxn6	plexin B3	protein-coding	0.000000	0.522388	
mm_49411.1	chr6	28624393	28624593	+	1	NA	NA	NA	144145	NM_019776	56463	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.010000	0.328358	
mm_167501.1	chr9	13296872	13297072	+	1	NA	NA	NA	50016	NM_025534	66396	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.025000	0.502488	
mm_29427.1	chr3	109021791	109021991	-	1	NA	NA	NA	5716	NM_001163567	329739	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.020000	0.407960	
mm_89593.1	chr10	95940767	95940967	+	1	NA	NA	NA	204	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.150000	0.751244	
mm_97451.1	chr11	78193302	78193502	+	1	NA	NA	NA	10	NM_001045516	216974	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	0.000000	0.417910	
mm_22983.1	chr3	32939217	32939417	+	1	NA	NA	NA	45762	NM_001163517	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.020000	0.482587	
mm_99828.1	chr11	108920750	108920950	+	1	NA	NA	NA	501	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.095000	0.646766	
mm_28837.1	chr3	96580043	96580243	-	1	NA	NA	NA	-13342	NR_040409	100038464	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	ENSMUSG00000074398|OTTMUSG00000021867	predicted gene 15441	ncRNA	0.025000	0.477612	
mm_136090.1	chr16	84977878	84978078	-	1	NA	NA	NA	5767	NR_045889	100038614	Mm.441351	NR_045889		Gm10791	ENSMUSG00000074933	predicted gene 10791	ncRNA	0.010000	0.497512	
mm_25927.1	chr3	131200026	131200226	+	1	NA	NA	NA	71975	NM_008212	15107	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.030000	0.537313	
mm_1282.1	chr1	63730537	63730737	+	1	NA	NA	NA	12	NM_172422	75619	Mm.30965	NM_172422	ENSMUSG00000025962	Fastkd2	2810421I24Rik	FAST kinase domains 2	protein-coding	0.085000	0.537313	
mm_135034.1	chr16	32868176	32868376	-	1	NA	NA	NA	90	NM_001200038	100502698	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Kiaa0226|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	0.040000	0.621891	
mm_150844.1	chr19	44988271	44988471	+	1	NA	NA	NA	-973	NM_011976	26456	Mm.34404	NM_011976	ENSMUSG00000025207	Sema4g	AI507908|AW554132	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	protein-coding	0.025000	0.452736	
mm_53604.1	chr6	138156202	138156402	+	1	NA	NA	NA	14708	NM_001347489	56615	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.005000	0.462687	
mm_96108.1	chr11	60541272	60541472	+	1	NA	NA	NA	3689	NM_172943	268420	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.000000	0.343284	
mm_138116.1	chr17	34139301	34139501	+	1	NA	NA	NA	-6015	NM_010388	15000	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0.020000	0.492537	
mm_118895.1	chr14	26637942	26638142	+	1	NA	NA	NA	-155	NM_007479	11843	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.120000	0.696517	
mm_136230.1	chr16	90284288	90284488	-	1	NA	NA	NA	115	NM_178923	224432	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.135000	0.746269	
mm_667.1	chr1	40448575	40448775	+	1	NA	NA	NA	9046	NM_010743	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.010000	0.452736	
mm_100061.1	chr11	115307117	115307317	+	1	NA	NA	NA	54	NM_172801	237987	Mm.44542	NM_172801	ENSMUSG00000050201	Otop2	4732464P15	otopetrin 2	protein-coding	0.020000	0.577114	
mm_63822.1	chr7	134670556	134670756	+	1	NA	NA	NA	-31	NM_001033420	330662	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik	dedicator of cytokinesis 1	protein-coding	0.140000	0.731343	
mm_25528.1	chr3	114904152	114904352	+	1	NA	NA	NA	174	NM_153458	229759	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding	0.060000	0.676617	
mm_110184.1	chr12	27338147	27338347	-	1	NA	NA	NA	4471	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.030000	0.407960	
mm_90670.1	chr10	128861882	128862082	+	1	NA	NA	NA	29736	NM_010272	14561	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	0.000000	0.427861	
mm_53508.1	chr6	135381869	135382069	+	1	NA	NA	NA	14476	NM_001288627	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.005000	0.417910	
mm_160639.1	chr9	108509206	108509406	+	1	NA	NA	NA	1301	NM_133794	97541	Mm.272427	NM_133794	ENSMUSG00000032604	Qars	1110018N24Rik|1200016L19Rik|C80286|GLNRS	glutaminyl-tRNA synthetase	protein-coding	0.005000	0.527363	
mm_66950.1	chr7	62085170	62085370	-	1	NA	NA	NA	40	NR_049204	100885843		NR_049204	ENSMUSG00000095154	Mir344i	Gm26031|mir-344i|mmu-mir-344i	microRNA 344i	ncRNA	0.000000	0.522388	
mm_91893.1	chr10	59951664	59951864	-	1	NA	NA	NA	6	NM_029083	74747	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.075000	0.641791	-100(CCTTATAGGCTG,+,0.00)
mm_134641.1	chr16	21762809	21763009	-	1	NA	NA	NA	24925	NM_023737	74147	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0.020000	0.492537	
mm_155718.1	chrX	96111990	96112190	+	1	NA	NA	NA	16045	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.005000	0.313433	
mm_134462.1	chr16	18426330	18426530	-	1	NA	NA	NA	13	NM_013711	26462	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0.135000	0.746269	
mm_114586.1	chr13	75749804	75750004	+	1	NA	NA	NA	42420	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.000000	0.373134	
mm_163499.1	chr12	111966931	111967131	-	1	NA	NA	NA	-54	NM_027360	70257	Mm.318	NM_027360	ENSMUSG00000021290	2010107E04Rik	9430003J03Rik|AU043134|AV124504|Mp68	RIKEN cDNA 2010107E04 gene	protein-coding	0.080000	0.641791	
mm_41072.1	chr5	87668506	87668706	+	1	NA	NA	NA	2398	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.462687	
mm_31622.1	chr4	59189543	59189743	+	1	NA	NA	NA	93	NM_011673	22234	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.130000	0.741294	
mm_75492.1	chr8	50517556	50517756	-	1	NA	NA	NA	149544	NR_046067	100039954	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.000000	0.427861	
mm_51818.1	chr6	88944470	88944670	+	1	NA	NA	NA	42319	NM_011906	24100	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.005000	0.527363	-35(GTCTATATAAAC,-,0.00)
mm_86923.1	chr10	23851662	23851862	+	1	NA	NA	NA	300	NM_011979	26464	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	0.000000	0.407960	
mm_113072.1	chr13	23779167	23779367	+	1	NA	NA	NA	-3274	NM_001029935	214158	Mm.314151	NM_001029935	ENSMUSG00000064140	Trim38	Gm23	tripartite motif-containing 38	protein-coding	0.020000	0.547264	
mm_42883.1	chr5	122371781	122371981	+	1	NA	NA	NA	82	NM_026883	68948	Mm.474469	NM_026883	ENSMUSG00000029463	Fam216a	1500011H22Rik	family with sequence similarity 216, member A	protein-coding	0.120000	0.786070	
mm_25363.1	chr3	107100942	107101142	+	1	NA	NA	NA	-525	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.010000	0.572139	
mm_168259.1	chr10	8762398	8762598	-	1	NA	NA	NA	123572	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.025000	0.482587	
mm_162178.1	chrX	102707535	102707735	-	1	NA	NA	NA	35	NM_001177365	668339	Mm.394985	NM_001177365	ENSMUSG00000079479	Gm9112	EG668339	predicted gene 9112	protein-coding	0.020000	0.597015	
mm_91387.1	chr10	30655627	30655827	-	1	NA	NA	NA	140	NM_001111267	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.010000	0.527363	
mm_73779.1	chr8	116921659	116921859	+	1	NA	NA	NA	19	NM_028131	72155	Mm.23185	NM_028131	ENSMUSG00000031756	Cenpn	2610510J17Rik|AI426416|AW545024	centromere protein N	protein-coding	0.095000	0.681592	
mm_106583.1	chr11	120729537	120729737	-	1	NA	NA	NA	-2353	NM_001347608	67880	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	0.040000	0.577114	
mm_70603.1	chr8	13351657	13351857	+	1	NA	NA	NA	12953	NM_009361	21781	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	0.025000	0.587065	
mm_30215.1	chr3	145009792	145009992	-	1	NA	NA	NA	22884	NM_017474	23844	Mm.33483	NM_017474	ENSMUSG00000028255	Clca1	Clca2|Clca3|gob-5|gob5	chloride channel accessory 1	protein-coding	0.015000	0.492537	
mm_46026.1	chr5	91402748	91402948	-	1	NA	NA	NA	146	NM_007568	12223	Mm.2024	NM_007568	ENSMUSG00000082361	Btc	Bcn	betacellulin, epidermal growth factor family member	protein-coding	0.025000	0.606965	
mm_58315.1	chr6	146401307	146401507	-	1	NA	NA	NA	100816	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.000000	0.393035	
mm_128530.1	chr15	54847289	54847489	-	1	NA	NA	NA	72757	NM_015744	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.010000	0.437811	
mm_55056.1	chr6	49047300	49047500	-	1	NA	NA	NA	10882	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.050000	0.512438	
mm_37762.1	chr4	129696491	129696691	-	1	NA	NA	NA	247	NM_199305	230770	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	0.100000	0.731343	
mm_56013.1	chr6	86525198	86525398	-	1	NA	NA	NA	867	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.080000	0.646766	
mm_83727.1	chr9	50972641	50972841	-	1	NA	NA	NA	36332	NM_178710	235344	Mm.104932	NM_178710	ENSMUSG00000037112	Sik2	G630080D20Rik|Snf1lk2	salt inducible kinase 2	protein-coding	0.000000	0.402985	
mm_46646.1	chr5	108582770	108582970	-	1	NA	NA	NA	-32843	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.005000	0.552239	
mm_47931.1	chr5	135078142	135078342	-	1	NA	NA	NA	24	NM_177574	194309	Mm.44356	NM_177574	ENSMUSG00000043614	Vps37d	Wbscr24	vacuolar protein sorting 37D	protein-coding	0.170000	0.830846	
mm_92336.1	chr10	75798482	75798682	-	1	NA	NA	NA	2	NM_008185	14871	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	0.030000	0.572139	
mm_27852.1	chr3	79156993	79157193	-	1	NA	NA	NA	-11218	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.393035	
mm_59194.1	chr7	24500633	24500833	+	1	NA	NA	NA	-6354	NM_001290461	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.025000	0.597015	
mm_2487.1	chr1	105990341	105990541	+	1	NA	NA	NA	35	NM_001122675	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.130000	0.701493	
mm_38042.1	chr4	133967111	133967311	-	1	NA	NA	NA	780	NM_016957	15331	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	0.080000	0.621891	
mm_57910.1	chr6	132627414	132627614	-	1	NA	NA	NA	-3	NM_001142969	381819	Mm.156682	NM_001142969	ENSMUSG00000067541	A630073D07Rik	Gm1688	RIKEN cDNA A630073D07 gene	protein-coding	0.000000	0.442786	
mm_151181.1	chr19	53352790	53352990	+	1	NA	NA	NA	22444	NM_001008543	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.005000	0.318408	
mm_117071.1	chr13	59229179	59229379	-	1	NA	NA	NA	315172	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.000000	0.467662	-11(AGCTCTAAAGGC,-,0.00)
mm_127788.1	chr15	3568604	3568804	-	1	NA	NA	NA	13138	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.000000	0.343284	
mm_146539.1	chr18	5593342	5593542	-	1	NA	NA	NA	-1005	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	0.070000	0.616915	
mm_2074.1	chr1	87640624	87640824	+	1	NA	NA	NA	20412	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.005000	0.472637	
mm_6738.1	chr1	83038346	83038546	-	1	NA	NA	NA	2	NM_030556	80721	Mm.261542	NM_030556	ENSMUSG00000038496	Slc19a3	A230084E24Rik|AI788884|ThTr2	solute carrier family 19, member 3	protein-coding	0.050000	0.537313	
mm_9294.1	chr1	171637084	171637284	-	1	NA	NA	NA	4716	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.020000	0.492537	
mm_86153.1	chr9	117872474	117872674	-	1	NA	NA	NA	-167948	NM_001286508	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.085000	0.726368	
mm_517.1	chr1	37430242	37430442	+	1	NA	NA	NA	170	NM_026123	67387	Mm.27404	NM_026123	ENSMUSG00000026111	Unc50	1110002A21Rik|GMH1|UNCL|URP	unc-50 homolog (C. elegans)	protein-coding	0.120000	0.706468	
mm_43513.1	chr5	137066881	137067081	+	1	NA	NA	NA	5291	NM_008871	18787	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.035000	0.552239	
mm_68064.1	chr7	101866676	101866876	-	1	NA	NA	NA	4012	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.020000	0.472637	
mm_147501.1	chr18	49979143	49979343	-	1	NA	NA	NA	-184	NM_001177760	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.035000	0.636816	
mm_69112.1	chr7	127025008	127025208	-	1	NA	NA	NA	1371	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.005000	0.552239	
mm_141110.1	chr17	26058580	26058780	-	1	NA	NA	NA	10497	NM_001162868	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.020000	0.432836	
mm_92173.1	chr10	67596586	67596786	-	1	NA	NA	NA	-47731	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.010000	0.497512	
mm_146132.1	chr18	74625466	74625666	+	1	NA	NA	NA	-94442	NR_045368	73606	Mm.444734	NR_045368		1700120E14Rik	-	RIKEN cDNA 1700120E14 gene	ncRNA	0.030000	0.517413	
mm_63730.1	chr7	130867411	130867611	+	1	NA	NA	NA	1601	NM_133942	101476	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.015000	0.447761	
mm_149164.1	chr19	9018483	9018683	+	1	NA	NA	NA	679	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.015000	0.348259	
mm_89552.1	chr10	94725551	94725751	+	1	NA	NA	NA	36861	NM_029852	77048	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	0.020000	0.303483	
mm_59168.1	chr7	24399867	24400067	+	1	NA	NA	NA	339	NM_028047	71997	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.090000	0.676617	21(GCCGTTAAAAGG,-,0.00)
mm_105664.1	chr11	107413608	107413808	-	1	NA	NA	NA	57012	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.025000	0.432836	19(GACTTTATAAAG,-,0.00),21(CTTTATAAAGTG,+,0.00)
mm_115244.1	chr13	110394949	110395149	+	1	NA	NA	NA	5	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.110000	0.671642	-34(GCGTATTTAAAG,-,0.00)
mm_61016.1	chr7	49372146	49372346	+	1	NA	NA	NA	126057	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.015000	0.492537	
mm_103887.1	chr11	83574615	83574815	-	1	NA	NA	NA	3921	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.000000	0.457711	
mm_115844.1	chr13	21287294	21287494	-	1	NA	NA	NA	5292	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.020000	0.512438	59(CCCCCTTAAAGA,-,0.00),60(CCCCTTAAAGAC,+,0.00),62(CCTTAAAGACTG,+,0.00)
mm_139724.1	chr17	57476240	57476440	+	1	NA	NA	NA	68974	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.005000	0.378109	
mm_81271.1	chr9	108094577	108094777	+	1	NA	NA	NA	-197	NM_146226	235606	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0.065000	0.601990	
mm_76621.1	chr8	91713239	91713439	-	1	NA	NA	NA	88315	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.025000	0.417910	
mm_122627.1	chr14	51145622	51145822	-	1	NA	NA	NA	1045	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.025000	0.537313	
mm_138646.1	chr17	35866747	35866947	+	1	NA	NA	NA	232	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.055000	0.597015	
mm_79819.1	chr9	64340615	64340815	+	1	NA	NA	NA	58	NM_001177784	213550	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	0.080000	0.681592	
mm_109857.1	chr12	4769142	4769342	-	1	NA	NA	NA	25	NM_175431	207921	Mm.184898	NM_175431	ENSMUSG00000050545	Fam228b	A830093I24Rik	family with sequence similarity 228, member B	protein-coding	0.100000	0.641791	
mm_30954.1	chr4	33310247	33310447	+	1	NA	NA	NA	36	NM_001305273	24018	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.095000	0.666667	
mm_119962.1	chr14	55478683	55478883	+	1	NA	NA	NA	25	NM_030686	28200	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	0.075000	0.666667	
mm_41976.1	chr5	107437850	107438050	+	1	NA	NA	NA	-47	NM_001255991	100503185	Mm.366650	NM_001255991	ENSMUSG00000111375	Btbd8	EG627196|Gm16115|OTTMUSG00000030610	BTB (POZ) domain containing 8	protein-coding	0.105000	0.706468	-88(GCATTTAGGGAC,+,0.00)
mm_157105.1	chrX	9437751	9437951	-	1	NA	NA	NA	31473	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.402985	1(CCTTTAATACCA,+,0.00)
mm_24024.1	chr3	87527304	87527504	+	1	NA	NA	NA	1826	NM_012051	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.030000	0.497512	
mm_104816.1	chr11	98968687	98968887	-	1	NA	NA	NA	8316	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.040000	0.587065	
mm_40522.1	chr5	57918449	57918649	+	1	NA	NA	NA	200468	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.005000	0.368159	-100(GTCCTTTAAAGC,-,0.00),-99(TCCTTTAAAGCT,+,0.00),-98(CCTTTAAAGCTG,+,0.00)
mm_26649.1	chr3	154021243	154021443	+	1	NA	NA	NA	47907	NM_001081263	242259	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0.005000	0.447761	
mm_122177.1	chr14	31545936	31546136	-	1	NA	NA	NA	31347	NM_009937	382864	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.010000	0.407960	
mm_35321.1	chr4	25800153	25800353	-	1	NA	NA	NA	-250	NM_010243	14348	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.025000	0.582090	
mm_3546.1	chr1	150407277	150407477	+	1	NA	NA	NA	-14322	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.025000	0.442786	
mm_141938.1	chr17	35048343	35048543	-	1	NA	NA	NA	-1698	NM_001146215	17687	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	0.025000	0.582090	
mm_162884.1	chr10	104941007	104941207	+	1	NA	NA	NA	633372	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.000000	0.422886	
mm_130381.1	chr15	97856000	97856200	-	1	NA	NA	NA	-11598	NM_001204278	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.010000	0.502488	
mm_101206.1	chr11	19056032	19056232	-	1	NA	NA	NA	-9143	NR_046037	74059	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA	0.015000	0.432836	58(GCTTTAATACTC,+,0.00)
mm_132175.1	chr16	32379839	32380039	+	1	NA	NA	NA	-20567	NM_001160402	277203	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0.010000	0.402985	-33(TCCTATAAAAGC,-,0.00)
mm_140284.1	chr17	85090533	85090733	+	1	NA	NA	NA	-67	NM_028576	73582	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	0.070000	0.621891	
mm_115934.1	chr13	23621003	23621203	-	1	NA	NA	NA	-9	NM_001177653	319179	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0.025000	0.412935	
mm_129472.1	chr15	78673585	78673785	-	1	NA	NA	NA	44428	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0.045000	0.582090	
mm_172560.1	chr8	106778551	106778751	-	1	NA	NA	NA	-91591	NM_008217	15118	Mm.56986	NM_008217	ENSMUSG00000031910	Has3	-	hyaluronan synthase 3	protein-coding	0.005000	0.472637	
mm_143140.1	chr17	57220088	57220288	-	1	NA	NA	NA	-2960	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.005000	0.447761	
mm_9200.1	chr1	171226218	171226418	-	1	NA	NA	NA	1264	NM_013474	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.020000	0.542289	
mm_110386.1	chr12	40247980	40248180	-	1	NA	NA	NA	24716	NR_045157	629820	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.000000	0.532338	
mm_161375.1	chr14	69567222	69567422	+	1	NA	NA	NA	11921	NM_026174	67464	Mm.489765	NM_026174	ENSMUSG00000095463	Entpd4	1200014F22Rik|4930513O14Rik|A430102M06Rik|AI414893|Lysal1|mKIAA0392	ectonucleoside triphosphate diphosphohydrolase 4	protein-coding	0.020000	0.477612	
mm_130944.1	chr15	103251551	103251751	-	1	NA	NA	NA	25	NM_001302338	18022	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.010000	0.537313	
mm_165699.1	chr3	95124343	95124543	+	1	NA	NA	NA	-71	NM_016712	50874	Mm.71935	NM_016712	ENSMUSG00000005628	Tmod4	MTMOD|Sk-Tmod	tropomodulin 4	protein-coding	0.015000	0.562189	
mm_38114.1	chr4	134535223	134535423	-	1	NA	NA	NA	-55	NM_001256112	76824	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	0.095000	0.706468	
mm_34820.1	chr4	154961083	154961283	+	1	NA	NA	NA	260	NM_010419	15208	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hairy and enhancer of split 5 (Drosophila)	protein-coding	0.085000	0.671642	
mm_77892.1	chr9	7347410	7347610	+	1	NA	NA	NA	136	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.432836	69(TCTTTAATAGTT,+,0.00)
mm_99318.1	chr11	101442306	101442506	+	1	NA	NA	NA	161	NM_011289	19942	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	0.055000	0.621891	
mm_74343.1	chr8	127234104	127234304	+	1	NA	NA	NA	-65408	NM_001013581	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.005000	0.353234	
mm_147455.1	chr18	46574357	46574557	-	1	NA	NA	NA	76	NM_173394	225471	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.045000	0.651741	
mm_6809.1	chr1	84157196	84157396	-	1	NA	NA	NA	61665	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.343284	
mm_152757.1	chr19	20373531	20373731	-	1	NA	NA	NA	17040	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.005000	0.363184	42(GCCTATAAATAG,-,0.00)
mm_132222.1	chr16	32641412	32641612	+	1	NA	NA	NA	-3131	NM_001110147	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.030000	0.592040	
mm_31403.1	chr4	48047206	48047406	+	1	NA	NA	NA	2001	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.060000	0.587065	
mm_118737.1	chr14	22310640	22310840	+	1	NA	NA	NA	232058	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.000000	0.437811	
mm_69832.1	chr7	141273004	141273204	-	1	NA	NA	NA	3682	NM_028069	72040	Mm.29080	NM_028069	ENSMUSG00000025497	Cdhr5	1810074H01Rik|AI481143|Mucdhl|Mupcdh	cadherin-related family member 5	protein-coding	0.025000	0.542289	
mm_165298.1	chr2	91877715	91877915	+	1	NA	NA	NA	-44374	NM_007699	12672	Mm.330405	NM_007699	ENSMUSG00000040495	Chrm4	Chrm-4|M4	cholinergic receptor, muscarinic 4	protein-coding	0.005000	0.378109	
mm_124574.1	chr14	124527752	124527952	-	1	NA	NA	NA	149275	NM_207667	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.005000	0.358209	
mm_140077.1	chr17	75178625	75178825	+	1	NA	NA	NA	-56	NM_001331236	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.020000	0.487562	
mm_41545.1	chr5	92897917	92898117	+	1	NA	NA	NA	24	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.185000	0.805970	
mm_39089.1	chr4	154636742	154636942	-	1	NA	NA	NA	31	NM_001177995	70673	Mm.257785	NM_027504	ENSMUSG00000039410	Prdm16	5730557K01Rik|csp1|mel1	PR domain containing 16	protein-coding	0.065000	0.552239	
mm_1775.1	chr1	78310282	78310482	+	1	NA	NA	NA	36	NM_001004173	433323	Mm.276248	NM_001004173	ENSMUSG00000032908	Sgpp2	SPPase2|Spp2	sphingosine-1-phosphate phosphotase 2	protein-coding	0.145000	0.741294	
mm_68750.1	chr7	121064749	121064949	-	1	NA	NA	NA	9681	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.000000	0.373134	
mm_2306.1	chr1	91540466	91540666	+	1	NA	NA	NA	1	NM_001039126	65247	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	0.055000	0.587065	
mm_102809.1	chr11	68929966	68930166	-	1	NA	NA	NA	-2985	NM_145746	252868	Mm.76826	NM_145746	ENSMUSG00000032921	Odf4	Oppo1	outer dense fiber of sperm tails 4	protein-coding	0.015000	0.447761	
mm_22572.1	chr3	10287965	10288165	+	1	NA	NA	NA	13118	NM_029310	75497	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.000000	0.532338	-51(CACTATAAGAGG,-,0.00)
mm_100152.1	chr11	116108823	116109023	+	1	NA	NA	NA	1312	NM_001205081	217333	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.045000	0.601990	
mm_17437.1	chr2	27578567	27578767	-	1	NA	NA	NA	63520	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.015000	0.462687	-35(GAGTATAAATAG,-,0.00)
mm_81331.1	chr9	108516994	108517194	+	1	NA	NA	NA	7	NM_175143	69232	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik	glutamine-rich 1	protein-coding	0.100000	0.656716	
mm_53656.1	chr6	141274917	141275117	+	1	NA	NA	NA	25748	NM_018779	54611	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0.005000	0.482587	
mm_66933.1	chr7	61563052	61563252	-	1	NA	NA	NA	52175	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.005000	0.388060	
mm_99543.1	chr11	103299242	103299442	+	1	NA	NA	NA	-31941	NM_016896	53859	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.020000	0.502488	
mm_99263.1	chr11	101246231	101246431	+	1	NA	NA	NA	-3	NM_019444	54409	Mm.260698	NM_019444	ENSMUSG00000001240	Ramp2	-	receptor (calcitonin) activity modifying protein 2	protein-coding	0.120000	0.781095	
mm_166475.1	chr5	144026494	144026694	-	1	NA	NA	NA	-11741	NM_177682	231874	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0.025000	0.447761	-41(GACTATATAAGG,-,0.00)
mm_65713.1	chr7	28378154	28378354	-	1	NA	NA	NA	974	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.055000	0.631841	
mm_161819.1	chr17	70851390	70851590	-	1	NA	NA	NA	244	NM_001164075	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.025000	0.552239	
mm_2818.1	chr1	131019708	131019908	+	1	NA	NA	NA	-37	NM_010548	16153	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.000000	0.432836	4(CAGTATAAAAGG,-,0.00)
mm_156277.1	chrX	136836762	136836962	+	1	NA	NA	NA	14116	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.010000	0.462687	
mm_84636.1	chr9	71163159	71163359	-	1	NA	NA	NA	30	NR_073483	64008	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.010000	0.437811	
mm_123727.1	chr14	70159358	70159558	-	1	NA	NA	NA	44	NM_001112735	268759	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	0.105000	0.721393	
mm_36689.1	chr4	96591330	96591530	-	1	NA	NA	NA	55	NM_028979	74519	Mm.458387	NM_028979	ENSMUSG00000015224	Cyp2j9	8430417E17Rik	cytochrome P450, family 2, subfamily j, polypeptide 9	protein-coding	0.020000	0.547264	
mm_76562.1	chr8	88521023	88521223	-	1	NA	NA	NA	-221	NM_027280	93960	Mm.30219	NM_027280	ENSMUSG00000031661	Nkd1	2810434J10Rik|9030215G15Rik|Nkd	naked cuticle 1 homolog (Drosophila)	protein-coding	0.070000	0.716418	
mm_167521.1	chr9	20898473	20898673	-	1	NA	NA	NA	17	NM_016876	53356	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0.100000	0.681592	
mm_126488.1	chr15	81626246	81626446	+	1	NA	NA	NA	-37543	NM_001289712	214669	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	l(3)mbt-like 2 (Drosophila)	protein-coding	0.010000	0.432836	
mm_132946.1	chr16	49908265	49908465	+	1	NA	NA	NA	52711	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.005000	0.407960	
mm_67109.1	chr7	70357843	70358043	-	1	NA	NA	NA	2650	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.065000	0.626866	69(GCTTTTATGGAC,+,0.00)
mm_56410.1	chr6	97205491	97205691	-	1	NA	NA	NA	56	NM_001301858	22200	Mm.277626	NM_011666	ENSMUSG00000030061	Uba3	A830034N06Rik|AI256736|AI848246|AW546539|Ube1c	ubiquitin-like modifier activating enzyme 3	protein-coding	0.090000	0.671642	
mm_114072.1	chr13	54382577	54382777	+	1	NA	NA	NA	11328	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.000000	0.452736	
mm_111076.1	chr12	80167728	80167928	-	1	NA	NA	NA	-34984	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.000000	0.398010	
mm_91238.1	chr10	22303789	22303989	-	1	NA	NA	NA	-2831	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.020000	0.457711	
mm_85288.1	chr9	99858771	99858971	-	1	NA	NA	NA	17299	NM_011440	20669	Mm.261595	NM_011440	ENSMUSG00000053747	Sox14	-	SRY (sex determining region Y)-box 14	protein-coding	0.010000	0.437811	
mm_107084.1	chr12	17348374	17348574	+	1	NA	NA	NA	-19	NM_001008421	217431	Mm.27536	NM_001008421	ENSMUSG00000061458	Nol10	Gm67	nucleolar protein 10	protein-coding	0.105000	0.671642	
mm_46871.1	chr5	113832379	113832579	-	1	NA	NA	NA	-1978	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.025000	0.597015	
mm_170355.1	chr1	85199531	85199731	+	1	NA	NA	NA	20	NM_001081746	665378	Mm.440912	NM_001081746		Gm7609	EG665378	predicted pseudogene 7609	protein-coding	0.010000	0.562189	
mm_10128.1	chr2	3779830	3780030	+	1	NA	NA	NA	66472	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.020000	0.472637	
mm_77653.1	chr8	124564365	124564565	-	1	NA	NA	NA	5242	NM_007428	11606	Mm.301626	NM_007428	ENSMUSG00000031980	Agt	AI265500|AngI|AngII|Aogen|Serpina8	angiotensinogen (serpin peptidase inhibitor, clade A, member 8)	protein-coding	0.040000	0.601990	
mm_2024.1	chr1	87128281	87128481	+	1	NA	NA	NA	3373	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.020000	0.542289	
mm_3296.1	chr1	136690432	136690632	+	1	NA	NA	NA	-5679	NR_037986	100503474	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0.005000	0.388060	
mm_136072.1	chr16	84772500	84772700	-	1	NA	NA	NA	-1523	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.020000	0.457711	46(CTCTTTAGAGAC,+,0.00)
mm_53977.1	chr6	6578586	6578786	-	1	NA	NA	NA	-28	NM_009169	20422	Mm.2469	NM_009169	ENSMUSG00000042541	Shfm1	DSS1|Shfdg1|Shfg	split hand/foot malformation (ectrodactyly) type 1	protein-coding	0.090000	0.582090	
mm_145243.1	chr18	50728380	50728580	+	1	NA	NA	NA	-159781	NM_026108	67365	Mm.158150	NM_026108	ENSMUSG00000048875	Hdhd1a	1700121L12Rik|GS1|Hdhd1|Pudp	haloacid dehalogenase-like hydrolase domain containing 1A	protein-coding	0.000000	0.437811	
mm_155428.1	chrX	73492708	73492908	+	1	NA	NA	NA	9207	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.010000	0.537313	
mm_101006.1	chr11	8479828	8480028	-	1	NA	NA	NA	184607	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.005000	0.532338	
mm_23315.1	chr3	53235109	53235309	+	1	NA	NA	NA	193662	NM_175386	108927	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968	lipoma HMGIC fusion partner	protein-coding	0.010000	0.388060	
mm_43792.1	chr5	142694000	142694200	+	1	NA	NA	NA	-8001	NM_146257	243328	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.005000	0.308458	
mm_30510.1	chr3	158031640	158031840	-	1	NA	NA	NA	14	NM_001093753	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.135000	0.701493	
mm_160908.1	chr11	82763953	82764153	-	1	NA	NA	NA	268	NM_009839	12467	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0.060000	0.567164	
mm_86971.1	chr10	25383742	25383942	+	1	NA	NA	NA	24044	NM_001199265	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.005000	0.407960	67(GTCCTTTAATGC,-,0.00)
mm_122453.1	chr14	45318415	45318615	-	1	NA	NA	NA	57	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.160000	0.796020	
mm_137692.1	chr17	28951872	28952072	+	1	NA	NA	NA	-1244	NM_025888	66989	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	0.020000	0.467662	
mm_107767.1	chr12	59129922	59130122	+	1	NA	NA	NA	276	NM_001165254	338320	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.000000	0.323383	
mm_23915.1	chr3	83046027	83046227	+	1	NA	NA	NA	3736	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.015000	0.417910	
mm_86885.1	chr10	22158429	22158629	+	1	NA	NA	NA	-80	NM_009016	19368	Mm.458004	NM_009016		Raet1a	RAE-1alpha|Rae1alpha|Raet1	retinoic acid early transcript 1, alpha	protein-coding	0.095000	0.721393	
mm_111005.1	chr12	78906850	78907050	-	1	NA	NA	NA	-12	NM_013738	27260	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	0.105000	0.716418	
mm_143382.1	chr17	67955846	67956046	-	1	NA	NA	NA	-5006	NM_001347410	268970	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0.025000	0.557214	
mm_58135.1	chr6	141249755	141249955	-	1	NA	NA	NA	586	NM_018779	54611	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0.115000	0.751244	
mm_95509.1	chr11	52000840	52001040	+	1	NA	NA	NA	-474	NM_009458	22210	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	2610301N02Rik|E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0.025000	0.492537	
mm_12615.1	chr2	74691852	74692052	+	1	NA	NA	NA	61	NM_013554	15430	Mm.24420	NM_013554	ENSMUSG00000050368	Hoxd10	AI385591|AI874987|Hox-4.5|Hox-5.3	homeobox D10	protein-coding	0.015000	0.447761	
mm_99071.1	chr11	99168431	99168631	+	1	NA	NA	NA	-13454	NM_007719	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.015000	0.482587	
mm_147786.1	chr18	61632586	61632786	-	1	NA	NA	NA	-6967	NR_045420	545261	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0.010000	0.582090	
mm_17491.1	chr2	28613270	28613470	-	1	NA	NA	NA	8612	NM_008114	14582	Mm.373385	NM_008114	ENSMUSG00000026815	Gfi1b	Gfi-1B	growth factor independent 1B	protein-coding	0.005000	0.407960	
mm_111391.1	chr12	88442139	88442339	-	1	NA	NA	NA	-64916	NR_045888	71818	Mm.490789	NR_045888		3200001D21Rik	-	RIKEN cDNA 3200001D21 gene	ncRNA	0.015000	0.522388	
mm_107605.1	chr12	49384261	49384461	+	1	NA	NA	NA	1354	NM_008241	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.120000	0.716418	
mm_290.1	chr1	22534023	22534223	+	1	NA	NA	NA	-101280	NM_183018	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.075000	0.616915	
mm_39088.1	chr4	154636716	154636916	-	1	NA	NA	NA	57	NM_001177995	70673	Mm.257785	NM_027504	ENSMUSG00000039410	Prdm16	5730557K01Rik|csp1|mel1	PR domain containing 16	protein-coding	0.050000	0.542289	
mm_56226.1	chr6	90325121	90325321	-	1	NA	NA	NA	-36	NM_027928	71797	Mm.49071	NM_027928	ENSMUSG00000056643	Chst13	1110067M19Rik|C4ST-3	carbohydrate (chondroitin 4) sulfotransferase 13	protein-coding	0.075000	0.646766	
mm_99559.1	chr11	103649545	103649745	+	1	NA	NA	NA	136	NM_001033212	104582	Mm.44618	NM_001033212	ENSMUSG00000046215	Rprml	AW049332	reprimo-like	protein-coding	0.120000	0.721393	
mm_124847.1	chr15	9524216	9524416	+	1	NA	NA	NA	5560	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.005000	0.402985	
mm_3147.1	chr1	135146640	135146840	+	1	NA	NA	NA	-94	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.190000	0.820896	
mm_45851.1	chr5	87780047	87780247	-	1	NA	NA	NA	5697	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.000000	0.293532	
mm_169320.1	chr14	113314555	113314755	+	1	NA	NA	NA	1293225	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA	0.040000	0.512438	
mm_38387.1	chr4	138809739	138809939	-	1	NA	NA	NA	9418	NM_011110	18784	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	0.015000	0.567164	
mm_70730.1	chr8	18846379	18846579	+	1	NA	NA	NA	200	NM_026792	52123	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	0.140000	0.796020	
mm_94755.1	chr11	21136568	21136768	+	1	NA	NA	NA	45344	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.005000	0.338308	
mm_172026.1	chr6	12278257	12278457	+	1	NA	NA	NA	-168777	NR_003631	625347	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo	0.020000	0.502488	-51(CCCTTTATAAGT,-,0.00)
mm_5840.1	chr1	52952744	52952944	-	1	NA	NA	NA	-4	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.065000	0.671642	
mm_2636.1	chr1	121495315	121495515	+	1	NA	NA	NA	33050	NM_010483	15564	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	0.010000	0.447761	-25(CATTTTAAAGCC,+,0.00),23(TTTTTTAAACAC,+,0.00)
mm_128041.1	chr15	25364884	25365084	-	1	NA	NA	NA	48780	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.035000	0.567164	
mm_44231.1	chr5	5262021	5262221	-	1	NA	NA	NA	3947	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.030000	0.507463	
mm_27060.1	chr3	27691520	27691720	-	1	NA	NA	NA	18819	NM_173182	72007	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.010000	0.512438	
mm_160140.1	chr7	33944884	33945084	-	1	NA	NA	NA	1	NM_178308	110187	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	0.005000	0.507463	-33(TGTTTTATAAGG,-,0.00)
mm_155967.1	chrX	106081143	106081343	+	1	NA	NA	NA	54019	NM_009726	11977	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	0.015000	0.552239	
mm_63398.1	chr7	127296245	127296445	+	1	NA	NA	NA	85	NM_001253874	16408	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.025000	0.587065	
mm_131246.1	chr16	10526366	10526566	+	1	NA	NA	NA	16588	NM_021428	58239	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0.020000	0.412935	
mm_71693.1	chr8	61395303	61395503	+	1	NA	NA	NA	-92331	NM_145595	234309	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.010000	0.338308	
mm_9090.1	chr1	168675768	168675968	-	1	NA	NA	NA	185225	NR_105766	102465178		NR_105766	ENSMUSG00000098407	Mir6348	Gm27412|mmu-mir-6348	microRNA 6348	ncRNA	0.020000	0.522388	
mm_102500.1	chr11	60537052	60537252	-	1	NA	NA	NA	-531	NM_172943	268420	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.080000	0.537313	
mm_170263.1	chr18	15988251	15988451	+	1	NA	NA	NA	-270305	NM_199055	71367	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0.025000	0.487562	
mm_13141.1	chr2	92184189	92184389	+	1	NA	NA	NA	107	NM_001346704	192285	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0.010000	0.611940	
mm_158487.1	chrX	142320227	142320427	-	1	NA	NA	NA	-14129	NM_021487	66240	Mm.58507	NM_021487	ENSMUSG00000090122	Kcne1l	1500015C14Rik|Kcne5|Mink	potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	protein-coding	0.010000	0.343284	-97(CCTTATATACCC,+,0.00)
mm_169149.1	chr13	62602237	62602437	-	1	NA	NA	NA	21845	NM_001324406	211378	Mm.247448	NM_173381	ENSMUSG00000072066	6720489N17Rik	9330128I06	RIKEN cDNA 6720489N17 gene	protein-coding	0.010000	0.472637	
mm_172638.1	chr8	22275572	22275772	-	1	NA	NA	NA	-7769	NM_199257	234129	Mm.450553	NM_181851	ENSMUSG00000031481	Tpte	Pten2	transmembrane phosphatase with tensin homology	protein-coding	0.015000	0.542289	
mm_5390.1	chr1	31222535	31222735	-	1	NA	NA	NA	21	NR_033445	70988	Mm.161414	NM_027637	ENSMUSG00000086727	4931428L18Rik	4930563O14Rik	RIKEN cDNA 4931428L18 gene	ncRNA	0.030000	0.537313	
mm_32202.1	chr4	101496599	101496799	+	1	NA	NA	NA	51	NM_198412	72685	Mm.76494	NM_198412	ENSMUSG00000028528	Dnajc6	2810027M23Rik|mKIAA0473	DnaJ heat shock protein family (Hsp40) member C6	protein-coding	0.150000	0.766169	
mm_60017.1	chr7	30765328	30765528	+	1	NA	NA	NA	1672	NM_001166174	73712	Mm.30138	NM_028618	ENSMUSG00000060962	Dmkn	1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36	dermokine	protein-coding	0.045000	0.582090	
mm_84909.1	chr9	79977550	79977750	-	1	NA	NA	NA	232	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.020000	0.482587	
mm_119738.1	chr14	54121831	54122031	+	1	NA	NA	NA	131998	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.467662	
mm_106199.1	chr11	116843029	116843229	-	1	NA	NA	NA	320	NM_033398	107817	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	0.140000	0.706468	
mm_46822.1	chr5	113163226	113163426	-	1	NA	NA	NA	-13	NM_172884	243219	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.035000	0.671642	
mm_125294.1	chr15	36792648	36792848	+	1	NA	NA	NA	1790	NM_011740	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.110000	0.771144	
mm_97254.1	chr11	75756861	75757061	+	1	NA	NA	NA	24074	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.035000	0.467662	
mm_139344.1	chr17	50239061	50239261	+	1	NA	NA	NA	-47	NR_131975	446210	Mm.378184	NM_001004437	ENSMUSG00000067103	AY702103	STDP2	cDNA sequence AY702103	ncRNA	0.005000	0.492537	
mm_4860.1	chr1	187651423	187651623	+	1	NA	NA	NA	42517	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.055000	0.507463	39(GGATTTAAAGGG,-,0.00)
mm_91494.1	chr10	37135835	37136035	-	1	NA	NA	NA	2991	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.015000	0.363184	
mm_24983.1	chr3	96832087	96832287	+	1	NA	NA	NA	-117	NR_015596	67583	Mm.444284	NR_015596	ENSMUSG00000087223	4930442L01Rik	-	RIKEN cDNA 4930442L01 gene	ncRNA	0.025000	0.502488	
mm_29197.1	chr3	106763163	106763363	-	1	NA	NA	NA	26886	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.000000	0.402985	
mm_91603.1	chr10	41221300	41221500	-	1	NA	NA	NA	81841	NM_133999	103199	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0.010000	0.537313	
mm_60449.1	chr7	44477242	44477442	+	1	NA	NA	NA	6995	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.452736	
mm_26671.1	chr3	154717984	154718184	+	1	NA	NA	NA	6951	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.015000	0.358209	
mm_158256.1	chrX	108834178	108834378	-	1	NA	NA	NA	77	NM_001081477	382236	Mm.100112	NM_001081477	ENSMUSG00000063663	Brwd3	Brodl|D030064D06Rik|Gm596	bromodomain and WD repeat domain containing 3	protein-coding	0.070000	0.601990	
mm_61920.1	chr7	90153427	90153627	+	1	NA	NA	NA	23295	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.015000	0.422886	-54(GACTCTATAAGT,-,0.00)
mm_139634.1	chr17	57367604	57367804	+	1	NA	NA	NA	9018	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.393035	
mm_39654.1	chr5	24709479	24709679	+	1	NA	NA	NA	21101	NM_001081441	269633	Mm.392539	NM_026621	ENSMUSG00000055235	Wdr86	2810046M22Rik|BC059069	WD repeat domain 86	protein-coding	0.010000	0.582090	
mm_79638.1	chr9	59544732	59544932	+	1	NA	NA	NA	5292	NM_010421	15211	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.005000	0.517413	
mm_140537.1	chr17	6757345	6757545	-	1	NA	NA	NA	25335	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.030000	0.572139	
mm_105461.1	chr11	104637121	104637321	-	1	NA	NA	NA	29221	NM_016780	16416	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding	0.030000	0.522388	
mm_115770.1	chr13	19307272	19307472	-	1	NA	NA	NA	88441	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.442786	
mm_166303.1	chr5	105131679	105131879	-	1	NA	NA	NA	7773	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.412935	
mm_8183.1	chr1	138080818	138081018	-	1	NA	NA	NA	94208	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.467662	
mm_807.1	chr1	45348880	45349080	+	1	NA	NA	NA	37442	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.010000	0.328358	
mm_137044.1	chr17	17915831	17916031	+	1	NA	NA	NA	28107	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.015000	0.318408	
mm_168248.1	chr10	82520190	82520390	+	1	NA	NA	NA	-27672	NM_001255990	432480	Mm.280394	NM_001255990	ENSMUSG00000094186	Gm1553	Lcrn	predicted gene 1553	protein-coding	0.020000	0.517413	
mm_9348.1	chr1	172067353	172067553	-	1	NA	NA	NA	-9857	NM_010916	18071	Mm.2474	NM_010916	ENSMUSG00000051251	Nhlh1	Hen1|Nscl|Tal2|bHLHa35	nescient helix loop helix 1	protein-coding	0.035000	0.552239	
mm_29083.1	chr3	104220269	104220469	-	1	NA	NA	NA	37	NM_133853	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	0.150000	0.766169	
mm_91056.1	chr10	18831807	18832007	-	1	NA	NA	NA	23	NR_038035	73968	Mm.55591	NR_038034		4930444F02Rik	1700010L24Rik|mpiR	RIKEN cDNA 4930444F02 gene	ncRNA	0.030000	0.597015	
mm_119106.1	chr14	30951437	30951637	+	1	NA	NA	NA	160	NM_011849	23955	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	0.100000	0.686567	
mm_51261.1	chr6	72097496	72097696	+	1	NA	NA	NA	-12	NM_001035228	20454	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.135000	0.771144	
mm_118779.1	chr14	24069653	24069853	+	1	NA	NA	NA	-19124	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.000000	0.432836	
mm_19361.1	chr2	91086322	91086522	-	1	NA	NA	NA	-10256	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.025000	0.606965	
mm_114439.1	chr13	66007449	66007649	+	1	NA	NA	NA	-105904	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.100000	0.626866	
mm_7325.1	chr1	101895786	101895986	-	1	NA	NA	NA	740118	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0.005000	0.388060	
mm_63532.1	chr7	127969648	127969848	+	1	NA	NA	NA	2269	NM_139149	233908	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0.010000	0.472637	
mm_32467.1	chr4	107706939	107707139	+	1	NA	NA	NA	-22877	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.005000	0.527363	
mm_153760.1	chr19	45560420	45560620	-	1	NA	NA	NA	44	NM_001330506	56626	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0.045000	0.527363	
mm_155153.1	chrX	52912274	52912474	+	1	NA	NA	NA	160	NM_001290546	70998	Mm.26870	NM_027642	ENSMUSG00000025626	Phf6	2700007B13Rik|4931428F02Rik|mKIAA1823	PHD finger protein 6	protein-coding	0.095000	0.676617	
mm_78063.1	chr9	15207009	15207209	+	1	NA	NA	NA	-31936	NM_026955	69137	Mm.41396	NM_026955	ENSMUSG00000031937	Vstm5	2200002K05Rik	V-set and transmembrane domain containing 5	protein-coding	0.000000	0.487562	
mm_21826.1	chr2	165368635	165368835	-	1	NA	NA	NA	-6616	NM_001005425	381405	Mm.296323	NM_001005425	ENSMUSG00000056824	Zfp663	Gm1008	zinc finger protein 663	protein-coding	0.090000	0.641791	
mm_95882.1	chr11	58102812	58103012	+	1	NA	NA	NA	-1241	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.020000	0.532338	
mm_117164.1	chr13	62858253	62858453	-	1	NA	NA	NA	17	NM_007994	14120	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	0.020000	0.532338	
mm_23115.1	chr3	37639809	37640009	+	1	NA	NA	NA	-38	NM_001305441	24063	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty homolog 1 (Drosophila)	protein-coding	0.120000	0.671642	
mm_91037.1	chr10	18235464	18235664	-	1	NA	NA	NA	-583	NM_144820	215814	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	0.040000	0.447761	
mm_78812.1	chr9	44069337	44069537	+	1	NA	NA	NA	8	NM_016808	53376	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.025000	0.542289	
mm_129082.1	chr15	75894177	75894377	-	1	NA	NA	NA	204	NM_172607	223646	Mm.288368	NM_172607	ENSMUSG00000022574	Naprt	9130210N20Rik|Naprt1	nicotinate phosphoribosyltransferase	protein-coding	0.075000	0.636816	
mm_74589.1	chr8	11476721	11476921	-	1	NA	NA	NA	-1108	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.025000	0.557214	
mm_146621.1	chr18	10116756	10116956	-	1	NA	NA	NA	64936	NM_009071	19877	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.000000	0.298507	
mm_113730.1	chr13	43962163	43962363	+	1	NA	NA	NA	-158904	NR_045285	328235	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA	0.005000	0.422886	
mm_114729.1	chr13	83721237	83721437	+	1	NA	NA	NA	-6769	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.025000	0.567164	
mm_50854.1	chr6	55037868	55038068	+	1	NA	NA	NA	-33	NM_180678	353172	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	0.145000	0.731343	
mm_15781.1	chr2	164334180	164334380	+	1	NA	NA	NA	1515	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.015000	0.452736	
mm_146082.1	chr18	70622535	70622735	+	1	NA	NA	NA	54343	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.035000	0.477612	
mm_24876.1	chr3	95985407	95985607	+	1	NA	NA	NA	-3	NR_045872	668224	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0.020000	0.572139	
mm_22299.1	chr2	180334585	180334785	-	1	NA	NA	NA	-6	NM_008093	14464	Mm.388880	NM_008093	ENSMUSG00000015627	Gata5	-	GATA binding protein 5	protein-coding	0.075000	0.671642	
mm_53180.1	chr6	125411221	125411421	+	1	NA	NA	NA	-30817	NM_198604	213522	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.010000	0.547264	
mm_144801.1	chr18	36109753	36109953	+	1	NA	NA	NA	3650	NR_015571	74966	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA	0.010000	0.452736	
mm_76221.1	chr8	83572351	83572551	-	1	NA	NA	NA	5693	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.010000	0.621891	
mm_5752.1	chr1	46853494	46853694	-	1	NA	NA	NA	-85	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.150000	0.731343	
mm_103835.1	chr11	83020662	83020862	-	1	NA	NA	NA	-40	NM_001167743	276950	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0.020000	0.507463	0(GCTTTTCTGGAC,+,0.00)
mm_8095.1	chr1	135845491	135845691	-	1	NA	NA	NA	4730	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.010000	0.582090	
mm_7884.1	chr1	133068296	133068496	-	1	NA	NA	NA	22384	NM_001099276	240752	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphoinositide-3-kinase, class 2, beta polypeptide	protein-coding	0.005000	0.527363	-73(CCCTATAAATAG,-,0.00),-35(GCCTTTAAAAAG,-,0.00),-34(CCTTTAAAAAGC,+,0.00),-33(CTTTAAAAAGCC,+,0.00)
mm_18769.1	chr2	73485651	73485851	-	1	NA	NA	NA	2	NM_001289723	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.020000	0.532338	19(CGGTTTAAGAGG,-,0.00)
mm_76616.1	chr8	91313151	91313351	-	1	NA	NA	NA	-29	NM_173431	244585	Mm.324592	NM_173431	ENSMUSG00000033282	Rpgrip1l	1700047E16Rik|4931437C01|Ftm|Nphp8	Rpgrip1-like	protein-coding	0.090000	0.646766	
mm_31546.1	chr4	55534569	55534769	+	1	NA	NA	NA	-2194	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.015000	0.388060	
mm_148447.1	chr19	3972353	3972553	+	1	NA	NA	NA	125	NM_001177438	621603	Mm.34137	NM_001177438	ENSMUSG00000075296	Aldh3b2	AI848594|C130048D07Rik	aldehyde dehydrogenase 3 family, member B2	protein-coding	0.025000	0.597015	
mm_17940.1	chr2	36091303	36091503	-	1	NA	NA	NA	12657	NM_001083126	16874	Mm.12881	NM_008500	ENSMUSG00000026890	Lhx6	Lhx6.1	LIM homeobox protein 6	protein-coding	0.075000	0.666667	
mm_24337.1	chr3	89714950	89715150	+	1	NA	NA	NA	28	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.080000	0.611940	
mm_68990.1	chr7	126601243	126601443	-	1	NA	NA	NA	-6433	NM_145636	246779	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	0.010000	0.522388	
mm_112479.1	chr13	5868857	5869057	+	1	NA	NA	NA	7468	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.005000	0.373134	-87(CTTTTAAGAGAC,+,0.00)
mm_151841.1	chr19	5729287	5729487	-	1	NA	NA	NA	279	NM_181452	17826	Mm.391142	NM_023166	ENSMUSG00000024939	Fam89b	1110021A21Rik|MMTV|Mtvr2	family with sequence similarity 89, member B	protein-coding	0.120000	0.701493	
mm_148962.1	chr19	7494155	7494355	+	1	NA	NA	NA	-183	NM_146091	109168	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0.070000	0.587065	
mm_88895.1	chr10	81149175	81149375	+	1	NA	NA	NA	13004	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.005000	0.412935	-90(GTTTATATAGAG,+,0.00)
mm_162848.1	chr10	87104759	87104959	+	1	NA	NA	NA	46813	NM_029685	76640	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding	0.005000	0.422886	
mm_42801.1	chr5	121712371	121712571	+	1	NA	NA	NA	862	NM_009125	20239	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.100000	0.771144	
mm_110489.1	chr12	52006401	52006601	-	1	NA	NA	NA	6	NM_029545	328092	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	0.105000	0.716418	
mm_127349.1	chr15	100619424	100619624	+	1	NA	NA	NA	3862	NM_011873	23994	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0.015000	0.477612	
mm_109180.1	chr12	108450212	108450412	+	1	NA	NA	NA	27496	NM_001043335	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.015000	0.482587	
mm_36975.1	chr4	109476597	109476797	-	1	NA	NA	NA	-192	NM_013876	29864	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0.125000	0.741294	
mm_123691.1	chr14	69640094	69640294	-	1	NA	NA	NA	30718	NM_033325	94352	Mm.116714	NM_033325	ENSMUSG00000034205	Loxl2	1110004B06Rik|4930526G11Rik|9430067E15Rik	lysyl oxidase-like 2	protein-coding	0.010000	0.432836	
mm_151627.1	chr19	3911724	3911924	-	1	NA	NA	NA	950	NM_144870	225887	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0.010000	0.507463	
mm_53061.1	chr6	124830135	124830335	+	1	NA	NA	NA	59	NM_013538	14793	Mm.285723	NM_013538	ENSMUSG00000023505	Cdca3	2410005A12Rik|C8|Grcc8|Tome-1	cell division cycle associated 3	protein-coding	0.045000	0.542289	
mm_88288.1	chr10	75212008	75212208	+	1	NA	NA	NA	35	NM_153406	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.130000	0.771144	
mm_93615.1	chr10	117238781	117238981	-	1	NA	NA	NA	-200	NM_029906	77397	Mm.118350	NM_029906	ENSMUSG00000020177	9530003J23Rik	Lyzf1	RIKEN cDNA 9530003J23 gene	protein-coding	0.025000	0.412935	
mm_125130.1	chr15	30303353	30303553	+	1	NA	NA	NA	130860	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.015000	0.393035	
mm_143104.1	chr17	57087525	57087725	-	1	NA	NA	NA	157	NM_009451	22153	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	0.085000	0.651741	
mm_81235.1	chr9	107912471	107912671	+	1	NA	NA	NA	-2432	NM_001287261	19882	Mm.3901	NM_009074	ENSMUSG00000032584	Mst1r	CD136|CDw136|Fv-2|Fv2|PTK8|Ron|STK	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding	0.025000	0.547264	18(GCCTCTAAGGGG,-,0.00),19(CCTCTAAGGGGC,+,0.00)
mm_20212.1	chr2	125506332	125506532	-	1	NA	NA	NA	6	NM_007993	14118	Mm.271644	NM_007993	ENSMUSG00000027204	Fbn1	AI536462|B430209H23|Fib-1|Tsk	fibrillin 1	protein-coding	0.065000	0.577114	
mm_53687.1	chr6	142401991	142402191	+	1	NA	NA	NA	-11340	NM_001242345	319552	Mm.39649	NM_001242345	ENSMUSG00000071112	Spx	B230216G23Rik|Npq	spexin hormone	protein-coding	0.010000	0.308458	
mm_130899.1	chr15	102403754	102403954	-	1	NA	NA	NA	-2462	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.005000	0.432836	
mm_150928.1	chr19	46304298	46304498	+	1	NA	NA	NA	-339	NM_001177369	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.025000	0.592040	
mm_159621.1	chr4	134532669	134532869	-	1	NA	NA	NA	2499	NM_001256112	76824	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	0.020000	0.527363	
mm_44628.1	chr5	26493189	26493389	-	1	NA	NA	NA	25	NR_029445	75942	Mm.50087	NR_029445	ENSMUSG00000029044	4930584F24Rik	1700001J09Rik|4930522C06Rik	RIKEN cDNA 4930584F24 gene	ncRNA	0.005000	0.487562	
mm_59467.1	chr7	27258750	27258950	+	1	NA	NA	NA	89	NM_010950	18223	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0.140000	0.796020	
mm_128992.1	chr15	74836887	74837087	-	1	NA	NA	NA	4656	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.010000	0.542289	
mm_95842.1	chr11	57128812	57129012	+	1	NA	NA	NA	115866	NM_001252403	14799	Mm.4920	NM_008165	ENSMUSG00000020524	Gria1	2900051M01Rik|Glr-1|Glr1|GluA1|GluR-A|GluRA|Glur-1|Glur1|HIPA1|gluR-K1	glutamate receptor, ionotropic, AMPA1 (alpha 1)	protein-coding	0.010000	0.547264	
mm_160298.1	chr7	132949711	132949911	+	1	NA	NA	NA	189	NM_207302	360216	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0.000000	0.398010	
mm_12192.1	chr2	65620732	65620932	+	1	NA	NA	NA	63	NM_001346679	110876	Mm.220329	NM_001099298	ENSMUSG00000075318	Scn2a	6430408L10|A230052E19Rik|Nav1.2|Scn2a1	sodium channel, voltage-gated, type II, alpha	protein-coding	0.015000	0.368159	
mm_78022.1	chr9	13749206	13749406	+	1	NA	NA	NA	125	NR_024025	77116	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.125000	0.741294	
mm_109248.1	chr12	109453196	109453396	+	1	NA	NA	NA	-159	NM_001190704	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.135000	0.746269	
mm_77646.1	chr8	124559224	124559424	-	1	NA	NA	NA	10383	NM_007428	11606	Mm.301626	NM_007428	ENSMUSG00000031980	Agt	AI265500|AngI|AngII|Aogen|Serpina8	angiotensinogen (serpin peptidase inhibitor, clade A, member 8)	protein-coding	0.045000	0.606965	
mm_130409.1	chr15	97977189	97977389	-	1	NA	NA	NA	13060	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.035000	0.537313	
mm_30269.1	chr3	146771250	146771450	-	1	NA	NA	NA	-657	NM_001164199	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.005000	0.432836	
mm_87780.1	chr10	60296327	60296527	+	1	NA	NA	NA	11966	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.587065	
mm_105565.1	chr11	106568326	106568526	-	1	NA	NA	NA	44504	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.040000	0.597015	
mm_120206.1	chr14	61861580	61861780	+	1	NA	NA	NA	-179307	NR_028264	668253	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.020000	0.462687	-11(GCTTTTATAACA,+,0.00)
mm_103379.1	chr11	75414951	75415151	-	1	NA	NA	NA	7572	NM_011340	20317	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.030000	0.547264	
mm_141693.1	chr17	33978367	33978567	-	1	NA	NA	NA	324	NR_004446	630499	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	0.130000	0.671642	
mm_106866.1	chr12	8009481	8009681	+	1	NA	NA	NA	31904	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.398010	
mm_33574.1	chr4	132310051	132310251	+	1	NA	NA	NA	-156	NR_034046	100217440		NR_034046		Snora61	MBI-164	small nucleolar RNA, H/ACA box 61	snoRNA	0.015000	0.447761	
mm_120918.1	chr14	76414984	76415184	+	1	NA	NA	NA	123	NM_001310646	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.160000	0.800995	
mm_81696.1	chr9	111185091	111185291	+	1	NA	NA	NA	67080	NM_001164838	71268	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.020000	0.587065	
mm_160502.1	chr9	15874602	15874802	-	1	NA	NA	NA	-146	NM_145712	244701	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0.045000	0.552239	
mm_10747.1	chr2	23155918	23156118	+	1	NA	NA	NA	6	NM_025979	67121	Mm.253721	NM_025979	ENSMUSG00000026779	Mastl	2700091H24Rik|C88295|GW|GWL|MAST-L|THC2	microtubule associated serine/threonine kinase-like	protein-coding	0.140000	0.736318	
mm_40808.1	chr5	71657975	71658175	+	1	NA	NA	NA	233	NM_010251	14397	Mm.248731	NM_010251	ENSMUSG00000029211	Gabra4	Gabra-4	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	protein-coding	0.095000	0.681592	
mm_11601.1	chr2	33642500	33642700	+	1	NA	NA	NA	1407	NR_046275	100504399	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	0.070000	0.661692	
mm_125146.1	chr15	30646443	30646643	+	1	NA	NA	NA	-392583	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.050000	0.562189	-46(GCCTTTAAATGT,-,0.00)
mm_54041.1	chr6	13607931	13608131	-	1	NA	NA	NA	67	NM_001347059	101118	Mm.254845	NM_028990	ENSMUSG00000029569	Tmem168	5730526F17Rik|8430437G11Rik|AI462344|AI504145	transmembrane protein 168	protein-coding	0.125000	0.701493	
mm_49676.1	chr6	31679236	31679436	+	1	NA	NA	NA	-115399	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	0.005000	0.492537	
mm_107342.1	chr12	32379823	32380023	+	1	NA	NA	NA	1134	NM_001162903	72123	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.080000	0.552239	
mm_33683.1	chr4	133369673	133369873	+	1	NA	NA	NA	1	NM_016981	20544	Mm.4312	NM_016981	ENSMUSG00000028854	Slc9a1	AW554487|Apnh|Mir5122|Nhe1|mir-5122|swe	solute carrier family 9 (sodium/hydrogen exchanger), member 1	protein-coding	0.080000	0.666667	-34(GCCTATAAATGG,-,0.00)
mm_34227.1	chr4	141012744	141012944	+	1	NA	NA	NA	2207	NM_008546	17150	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0.025000	0.601990	
mm_40088.1	chr5	34543303	34543503	+	1	NA	NA	NA	38	NM_001145858	24055	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.015000	0.606965	
mm_73194.1	chr8	95534001	95534201	+	1	NA	NA	NA	1	NM_172914	244608	Mm.248902	NM_172914	ENSMUSG00000036598	Ccdc113	4933409I22|BC060957	coiled-coil domain containing 113	protein-coding	0.065000	0.597015	-33(CCCTATAAACAG,+,0.00)
mm_101682.1	chr11	40692522	40692722	-	1	NA	NA	NA	60	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.120000	0.736318	
mm_64406.1	chr7	142511245	142511445	+	1	NA	NA	NA	-4574	NR_033261	677289	Mm.350054	NR_033261	ENSMUSG00000043795	Prr33	ENSMUSG00000043795|Gm14492|OTTMUSG00000016823	proline rich 33	ncRNA	0.015000	0.537313	
mm_111016.1	chr12	78989085	78989285	-	1	NA	NA	NA	-5707	NM_001170401	268567	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.005000	0.457711	-33(GGGTATTAAAGG,-,0.00),14(CCTCCTAAAAGG,-,0.00)
mm_163872.1	chr14	19419202	19419402	+	1	NA	NA	NA	183285	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.373134	
mm_145520.1	chr18	60556334	60556534	+	1	NA	NA	NA	-4352	NM_025776	66810	Mm.275106	NM_025776	ENSMUSG00000024604	Rbm22	8430430L24Rik	RNA binding motif protein 22	protein-coding	0.025000	0.537313	76(GTGTTTATAAAG,-,0.00)
mm_22657.1	chr3	14871566	14871766	+	1	NA	NA	NA	8128	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.025000	0.606965	
mm_155910.1	chrX	101794562	101794762	+	1	NA	NA	NA	-54723	NM_001163610	100042480	Mm.232	NM_001163610	ENSMUSG00000079481	Nhsl2	1110062M06Rik|6430511F03|AI225852|AW488865|EG621083|ENSMUSG00000073037|Gm10456	NHS-like 2	protein-coding	0.070000	0.587065	
mm_69522.1	chr7	135645556	135645756	-	1	NA	NA	NA	-6243	NM_001316681	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.000000	0.338308	
mm_59588.1	chr7	28131449	28131649	+	1	NA	NA	NA	2083	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.587065	
mm_51672.1	chr6	86404261	86404461	+	1	NA	NA	NA	142	NM_001164078	21841	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	0.090000	0.616915	
mm_27695.1	chr3	66296715	66296915	-	1	NA	NA	NA	22	NM_145820	72789	Mm.443526	NM_028357	ENSMUSG00000027831	Veph1	2810471M23Rik|Veph	ventricular zone expressed PH domain-containing 1	protein-coding	0.040000	0.547264	
mm_31917.1	chr4	85205420	85205620	+	1	NA	NA	NA	64	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.125000	0.716418	
mm_46431.1	chr5	104440947	104441147	-	1	NA	NA	NA	4855	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.005000	0.268657	
mm_148999.1	chr19	8664274	8664474	+	1	NA	NA	NA	369	NM_001112697	12669	Mm.240607	NM_007698	ENSMUSG00000032773	Chrm1	Chrm-1|M1|M1R	cholinergic receptor, muscarinic 1, CNS	protein-coding	0.030000	0.661692	
mm_34646.1	chr4	150807680	150807880	+	1	NA	NA	NA	47169	NR_040649	73348	Mm.396218	NR_040649	ENSMUSG00000078492	1700045H11Rik	-	RIKEN cDNA 1700045H11 gene	ncRNA	0.025000	0.532338	
mm_59569.1	chr7	28101201	28101401	+	1	NA	NA	NA	-28165	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.567164	
mm_15693.1	chr2	163659051	163659251	+	1	NA	NA	NA	693	NM_001164053	18769	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.015000	0.462687	
mm_90715.1	chr10	4409783	4409983	-	1	NA	NA	NA	19283	NR_002891	433224	Mm.153111	NR_002891		Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	0.015000	0.482587	
mm_90518.1	chr10	128058854	128059054	+	1	NA	NA	NA	-28	NM_019766	56351	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3 (cytosolic)	protein-coding	0.155000	0.726368	
mm_85161.1	chr9	96358422	96358622	-	1	NA	NA	NA	5777	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.010000	0.412935	
mm_26045.1	chr3	135602948	135603148	+	1	NA	NA	NA	88499	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.020000	0.432836	-14(GTTTTTAAACTG,+,0.00)
mm_108421.1	chr12	82169372	82169572	+	1	NA	NA	NA	-544	NM_001167983	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.080000	0.706468	
mm_88490.1	chr10	77720489	77720689	+	1	NA	NA	NA	3	NM_010670	16694	Mm.34372	NM_010670	ENSMUSG00000069583	Krtap12-1	D10Jhu14e	keratin associated protein 12-1	protein-coding	0.000000	0.552239	-34(GGGTATAAAAGC,-,0.00)
mm_9773.1	chr1	181017419	181017619	-	1	NA	NA	NA	50	NM_010145	13849	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.040000	0.646766	
mm_157150.1	chrX	9461959	9462159	-	1	NA	NA	NA	7265	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.015000	0.462687	
mm_16683.1	chr2	6884387	6884587	-	1	NA	NA	NA	509	NM_010160	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.025000	0.437811	
mm_78653.1	chr9	40450219	40450419	+	1	NA	NA	NA	5445	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.010000	0.547264	
mm_63994.1	chr7	140115699	140115899	+	1	NA	NA	NA	624	NM_053119	93747	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	0.010000	0.452736	-13(TTCTCTTAAAGC,-,0.00)
mm_139004.1	chr17	45568831	45569031	+	1	NA	NA	NA	4330	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.010000	0.487562	
mm_112970.1	chr13	21286841	21287041	+	1	NA	NA	NA	5745	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.010000	0.452736	
mm_133541.1	chr16	91082841	91083041	+	1	NA	NA	NA	-13796	NM_028905	74387	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.005000	0.378109	
mm_73440.1	chr8	106168792	106168992	+	1	NA	NA	NA	17	NM_178798	330836	Mm.46749	NM_178798	ENSMUSG00000031904	Slc7a6	AI643885|LAT-2|LAT3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 6	protein-coding	0.150000	0.766169	
mm_117088.1	chr13	59746859	59747059	-	1	NA	NA	NA	13309	NR_045977	75223	Mm.444771	NR_045977	ENSMUSG00000097502	4930528D03Rik	-	RIKEN cDNA 4930528D03 gene	ncRNA	0.020000	0.567164	
mm_93243.1	chr10	95416624	95416824	-	1	NA	NA	NA	133	NM_007706	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.115000	0.701493	
mm_165088.1	chr19	48769401	48769601	+	1	NA	NA	NA	563476	NM_025696	66673	Mm.70980	NM_025696	ENSMUSG00000063434	Sorcs3	6330404A12Rik|AW045579	sortilin-related VPS10 domain containing receptor 3	protein-coding	0.005000	0.492537	-56(CCTTATATACTA,+,0.00)
mm_40549.1	chr5	58109372	58109572	+	1	NA	NA	NA	343526	NR_046190	78163	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA	0.005000	0.273632	71(TGCTTTAAAAGT,-,0.00),72(GCTTTAAAAGTA,+,0.00)
mm_45467.1	chr5	69341442	69341642	-	1	NA	NA	NA	167	NM_175519	243043	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	0.100000	0.681592	
mm_91314.1	chr10	24926640	24926840	-	1	NA	NA	NA	730	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.020000	0.437811	7(CTCTCTTTAAGG,-,0.00),9(CTCTTTAAGGAG,+,0.00)
mm_58340.1	chr6	146954338	146954538	-	1	NA	NA	NA	-17	NM_028509	73344	Mm.391543	NM_028509	ENSMUSG00000040163	1700034J05Rik	-	RIKEN cDNA 1700034J05 gene	protein-coding	0.000000	0.437811	
mm_115030.1	chr13	99247601	99247801	+	1	NA	NA	NA	62878	NM_001004149	238803	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.000000	0.472637	
mm_70516.1	chr8	12947871	12948071	+	1	NA	NA	NA	30	NR_128567	104797311		NR_128567	ENSMUSG00000105030	Gm38671	Mir9768|mmu-mir-9768	predicted gene, 38671	ncRNA	0.065000	0.661692	
mm_135277.1	chr16	38433064	38433264	-	1	NA	NA	NA	-19	NM_134102	85031	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.010000	0.417910	
mm_71284.1	chr8	40920297	40920497	+	1	NA	NA	NA	-5836	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.010000	0.462687	
mm_75950.1	chr8	71665370	71665570	-	1	NA	NA	NA	6287	NM_001029873	382018	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.020000	0.527363	
mm_3823.1	chr1	159276111	159276311	+	1	NA	NA	NA	-17562	NR_144489	100846986		NR_144489		Pou5f1-rs1	Gm21053|Oct4P2|Otf-3rs|Otf3-rs1|Otf3a	POU domain, class 5, transcription factor 1, related sequence 1	pseudo	0.005000	0.358209	
mm_141310.1	chr17	28356766	28356966	-	1	NA	NA	NA	-6061	NM_011566	21678	Mm.6655	NM_011566	ENSMUSG00000002249	Tead3	DTEF-1|ETFR-1|TEAD-3|TEF-5|Tcf13r2	TEA domain family member 3	protein-coding	0.010000	0.497512	
mm_71287.1	chr8	40921726	40921926	+	1	NA	NA	NA	-4407	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.015000	0.412935	
mm_11748.1	chr2	38354699	38354899	+	1	NA	NA	NA	3491	NM_010710	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.070000	0.616915	
mm_17363.1	chr2	26668706	26668906	-	1	NA	NA	NA	2476	NM_010695	16821	Mm.123925	NM_010695	ENSMUSG00000026919	Lcn4	A630045M08Rik|Vnsp2	lipocalin 4	protein-coding	0.005000	0.442786	
mm_87897.1	chr10	62071421	62071621	+	1	NA	NA	NA	39492	NM_027251	69894	Mm.294126	NM_027251	ENSMUSG00000020083	2010107G23Rik	AA545165	RIKEN cDNA 2010107G23 gene	protein-coding	0.040000	0.562189	
mm_100284.1	chr11	117809569	117809769	+	1	NA	NA	NA	2	NM_009304	20973	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0.135000	0.736318	
mm_32002.1	chr4	94614392	94614592	+	1	NA	NA	NA	1	NM_026319	67694	Mm.240619	NM_026319	ENSMUSG00000028576	Ift74	1700029H06Rik|Ccdc2|Cmg1|b2b796Clo	intraflagellar transport 74	protein-coding	0.110000	0.646766	
mm_51974.1	chr6	91758544	91758744	+	1	NA	NA	NA	48749	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.010000	0.288557	
mm_15575.1	chr2	158666648	158666848	+	1	NA	NA	NA	15	NM_153089	228852	Mm.150540	NM_153089	ENSMUSG00000037754	Ppp1r16b	ANKRD4|C130078N17Rik|TIMAP|Wdt4	protein phosphatase 1, regulatory (inhibitor) subunit 16B	protein-coding	0.020000	0.487562	-34(CTCTAGATAAGG,-,0.00)
mm_46645.1	chr5	108582053	108582253	-	1	NA	NA	NA	-32126	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.005000	0.527363	
mm_49192.1	chr6	15185759	15185959	+	1	NA	NA	NA	353	NM_001286607	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.005000	0.393035	
mm_47005.1	chr5	115464514	115464714	-	1	NA	NA	NA	-1652	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.025000	0.512438	
mm_25383.1	chr3	107213286	107213486	+	1	NA	NA	NA	8346	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.522388	
mm_152580.1	chr19	11602917	11603117	-	1	NA	NA	NA	1787	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.005000	0.452736	
mm_54629.1	chr6	38691788	38691988	-	1	NA	NA	NA	28819	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.010000	0.482587	
mm_105630.1	chr11	106920608	106920808	-	1	NA	NA	NA	7	NM_025481	66313	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	0.140000	0.796020	
mm_66869.1	chr7	57386882	57387082	-	1	NA	NA	NA	-111	NM_008074	14407	Mm.434343	NM_008074	ENSMUSG00000055026	Gabrg3	B230362M20Rik|Gabrg-3	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3	protein-coding	0.120000	0.771144	
mm_123434.1	chr14	64440940	64441140	-	1	NA	NA	NA	0	NM_001253712	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.040000	0.522388	-68(CCTCTTATAGGT,+,0.00),-35(GCCTTTTTATGC,-,0.00),-33(CTTTTTATGCAC,+,0.00)
mm_128891.1	chr15	73185151	73185351	-	1	NA	NA	NA	-304	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.135000	0.751244	
mm_139270.1	chr17	48089547	48089747	+	1	NA	NA	NA	15	NM_026625	68224	Mm.138490	NM_026625	ENSMUSG00000021545	1700067P10Rik	-	RIKEN cDNA 1700067P10 gene	protein-coding	0.010000	0.537313	
mm_165166.1	chr2	25571278	25571478	-	1	NA	NA	NA	-62	NM_001081199	381352	Mm.289046	NM_001081199	ENSMUSG00000026941	Mamdc4	Gm995	MAM domain containing 4	protein-coding	0.015000	0.542289	
mm_37491.1	chr4	123613687	123613887	-	1	NA	NA	NA	-2633	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.020000	0.502488	
mm_72062.1	chr8	71464855	71465055	+	1	NA	NA	NA	29	NM_053162	94065	Mm.29489	NM_053162	ENSMUSG00000034880	Mrpl34	0610007O17Rik|D8Bwg1484e	mitochondrial ribosomal protein L34	protein-coding	0.055000	0.597015	
mm_55877.1	chr6	83520662	83520862	-	1	NA	NA	NA	-13793	NM_001162521	27369	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0.025000	0.497512	
mm_164340.1	chr16	14357532	14357732	+	1	NA	NA	NA	-3926	NM_008576	17250	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.005000	0.467662	
mm_18745.1	chr2	73214312	73214512	-	1	NA	NA	NA	35	NM_030091	67059	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	0.135000	0.766169	
mm_117716.1	chr13	95368432	95368632	-	1	NA	NA	NA	6825	NM_025630	66549	Mm.36785	NM_025630	ENSMUSG00000021681	Aggf1	2010009L17Rik|2310029P06Rik|AW112072|Peg3|VG5Q	angiogenic factor with G patch and FHA domains 1	protein-coding	0.025000	0.422886	
mm_37687.1	chr4	129228484	129228684	-	1	NA	NA	NA	-673	NM_001285866	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.020000	0.532338	
mm_43089.1	chr5	124450333	124450533	+	1	NA	NA	NA	3729	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.015000	0.572139	
mm_33064.1	chr4	123248253	123248453	+	1	NA	NA	NA	14797	NM_013905	56198	Mm.103615	NM_013905	ENSMUSG00000032744	Heyl	Hey3|Hrt3|bHLHb33|hesr3	hairy/enhancer-of-split related with YRPW motif-like	protein-coding	0.005000	0.537313	
mm_105079.1	chr11	100822386	100822586	-	1	NA	NA	NA	84	NM_011489	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.040000	0.572139	
mm_44107.1	chr5	149368353	149368553	+	1	NA	NA	NA	-43353	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.020000	0.492537	3(GTCCCTAAAGGC,-,0.00)
mm_109749.1	chr12	117657957	117658157	+	1	NA	NA	NA	141578	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.020000	0.398010	
mm_165773.1	chr3	128258023	128258223	-	1	NA	NA	NA	-26518	NR_045704	402774	Mm.209170	NR_045704	ENSMUSG00000105816	D030025E07Rik	-	RIKEN cDNA D030025E07 gene	ncRNA	0.005000	0.253731	
mm_62590.1	chr7	105640696	105640896	+	1	NA	NA	NA	256	NM_019502	14356	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0.050000	0.592040	
mm_122574.1	chr14	50807667	50807867	-	1	NA	NA	NA	4	NR_002142	85029		NR_002142	ENSMUSG00000092837	Rpph1	Gm24821|H1RNA|Rmrp5|Rpr	ribonuclease P RNA component H1	ncRNA	0.070000	0.567164	
mm_4826.1	chr1	185487194	185487394	+	1	NA	NA	NA	-10012	NR_033600	114668	Mm.379303	NR_033600	ENSMUSG00000102185	5033404E19Rik	-	NSA2 ribosome biogenesis homolog pseudogene	pseudo	0.015000	0.547264	
mm_38202.1	chr4	135573442	135573642	-	1	NA	NA	NA	78	NM_001013756	230824	Mm.331972	NM_001013756	ENSMUSG00000037188	Grhl3	AI561912|Get1|Som|Tfcp2l4|ct	grainyhead-like 3 (Drosophila)	protein-coding	0.070000	0.592040	
mm_63243.1	chr7	126585782	126585982	+	1	NA	NA	NA	-65	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.010000	0.592040	
mm_1080.1	chr1	59482816	59483016	+	1	NA	NA	NA	769	NM_008057	14369	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.150000	0.771144	
mm_63077.1	chr7	122219549	122219749	+	1	NA	NA	NA	153	NM_027363	70261	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.055000	0.611940	
mm_28314.1	chr3	89270385	89270585	-	1	NA	NA	NA	85	NM_009057	19729	Mm.17958	NM_009057	ENSMUSG00000027953	Slc50a1	MmSWEET1|Rag1ap1|Rga	solute carrier family 50 (sugar transporter), member 1	protein-coding	0.095000	0.676617	
mm_26661.1	chr3	154664087	154664287	+	1	NA	NA	NA	-46946	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.060000	0.646766	
mm_15093.1	chr2	153278765	153278965	+	1	NA	NA	NA	-12551	NM_008444	16569	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0.010000	0.452736	
mm_157042.1	chrX	7976498	7976698	-	1	NA	NA	NA	-8688	NM_008089	14460	Mm.335973	NM_008089	ENSMUSG00000031162	Gata1	Gata-1|Gf-1|eryf1	GATA binding protein 1	protein-coding	0.030000	0.517413	
mm_11340.1	chr2	30718471	30718671	+	1	NA	NA	NA	-2639	NR_037272	100526499		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.015000	0.582090	
mm_129836.1	chr15	83154252	83154452	-	1	NA	NA	NA	4707	NR_004432	104307	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.000000	0.577114	
mm_52728.1	chr6	120189012	120189212	+	1	NA	NA	NA	-4711	NM_001347432	29862	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.010000	0.467662	86(GGATCTTAAAGG,-,0.00)
mm_13492.1	chr2	106693451	106693651	+	1	NA	NA	NA	92	NM_001143683	77015	Mm.45628	NM_029837	ENSMUSG00000016386	Mpped2	239Fb|2700082O15Rik|AV354767|AW060960	metallophosphoesterase domain containing 2	protein-coding	0.100000	0.716418	
mm_74509.1	chr8	8657642	8657842	-	1	NA	NA	NA	3031	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.000000	0.328358	
mm_18516.1	chr2	62645522	62645722	-	1	NA	NA	NA	633	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.035000	0.557214	
mm_19429.1	chr2	91940217	91940417	-	1	NA	NA	NA	4613	NR_105965	102465604		NR_105965	ENSMUSG00000098651	Mir6999	Gm27673|mmu-mir-6999	microRNA 6999	ncRNA	0.005000	0.542289	
mm_133265.1	chr16	77351651	77351851	+	1	NA	NA	NA	22423	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.010000	0.432836	
mm_153054.1	chr19	32108005	32108205	-	1	NA	NA	NA	-4965	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.090000	0.706468	
mm_121606.1	chr14	8257950	8258150	-	1	NA	NA	NA	789	NM_001161667	93732	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0.015000	0.572139	
mm_142411.1	chr17	45544279	45544479	-	1	NA	NA	NA	5298	NM_001013749	210573	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0.020000	0.547264	
mm_38630.1	chr4	142192854	142193054	-	1	NA	NA	NA	17254	NM_144531	71529	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	0.015000	0.532338	
mm_37025.1	chr4	114925487	114925687	-	1	NA	NA	NA	426	NM_015758	30923	Mm.377122	NM_015758	ENSMUSG00000044518	Foxe3	FREAC8|dyl|rct	forkhead box E3	protein-coding	0.140000	0.686567	
mm_93745.1	chr10	120159475	120159675	-	1	NA	NA	NA	41962	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.005000	0.487562	
mm_131206.1	chr16	8637919	8638119	+	1	NA	NA	NA	312	NM_016881	54128	Mm.9699	NM_016881	ENSMUSG00000022711	Pmm2	AI585868|C86848	phosphomannomutase 2	protein-coding	0.045000	0.621891	
mm_140421.1	chr17	87863322	87863522	+	1	NA	NA	NA	-65428	NM_199251	210741	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	0.005000	0.507463	
mm_120767.1	chr14	73384949	73385149	+	1	NA	NA	NA	222	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.105000	0.706468	
mm_16527.1	chr2	181540392	181540592	+	1	NA	NA	NA	20007	NM_001271584	13002	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0.010000	0.457711	
mm_65334.1	chr7	24978335	24978535	-	1	NA	NA	NA	-5707	NM_010261	14470	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.030000	0.656716	
mm_13358.1	chr2	103424000	103424200	+	1	NA	NA	NA	32	NM_010125	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.040000	0.507463	
mm_40163.1	chr5	35728310	35728510	+	1	NA	NA	NA	866	NM_194344	231147	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.015000	0.522388	
mm_63123.1	chr7	122969797	122969997	+	1	NA	NA	NA	562	NR_045614	73951	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.155000	0.771144	
mm_52255.1	chr6	107529702	107529902	+	1	NA	NA	NA	76	NM_008516	16979	Mm.428543	NM_008516	ENSMUSG00000034648	Lrrn1	2810047E21Rik|NLRR-1	leucine rich repeat protein 1, neuronal	protein-coding	0.120000	0.721393	
mm_153993.1	chr19	50573076	50573276	-	1	NA	NA	NA	105470	NM_001252501	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.010000	0.383085	
mm_125912.1	chr15	76032741	76032941	+	1	NA	NA	NA	-18505	NM_134087	105732	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	0.015000	0.472637	
mm_128177.1	chr15	34443556	34443756	-	1	NA	NA	NA	-380	NM_001163485	19946	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	0.065000	0.557214	
mm_142005.1	chr17	35200009	35200209	-	1	NA	NA	NA	1898	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.010000	0.507463	
mm_139034.1	chr17	46163114	46163314	+	1	NA	NA	NA	2182	NM_001145979	56055	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.025000	0.507463	
mm_28105.1	chr3	86548223	86548423	-	1	NA	NA	NA	-40	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.055000	0.557214	
mm_123959.1	chr14	74837709	74837909	-	1	NA	NA	NA	105512	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.010000	0.482587	
mm_11370.1	chr2	30995597	30995797	+	1	NA	NA	NA	13418	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.010000	0.472637	
mm_11100.1	chr2	28076410	28076610	+	1	NA	NA	NA	8368	NM_010190	14134	Mm.182935	NM_010190	ENSMUSG00000026835	Fcnb	Fcn2	ficolin B	protein-coding	0.005000	0.532338	
mm_158729.1	chrX	163958476	163958676	-	1	NA	NA	NA	90	NM_009453	22184	Mm.426178	NM_009453	ENSMUSG00000031370	Zrsr2	35kDa|5031411E02Rik|A230052C13Rik|C77286|U2af1-rs2|URP	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	protein-coding	0.080000	0.676617	72(GCCTCTTTGAGG,-,0.00)
mm_17497.1	chr2	28699548	28699748	-	1	NA	NA	NA	3	NM_027283	69987	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	0.065000	0.666667	
mm_47367.1	chr5	122949076	122949276	-	1	NA	NA	NA	39923	NM_001003953	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.025000	0.532338	-98(CTTCATAAAAGG,-,0.00)
mm_48120.1	chr5	137139013	137139213	-	1	NA	NA	NA	-22906	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.030000	0.497512	
mm_107162.1	chr12	24651278	24651478	+	1	NA	NA	NA	7	NM_178357	194655	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	0.160000	0.786070	
mm_73590.1	chr8	109992505	109992705	+	1	NA	NA	NA	2169	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.025000	0.567164	
mm_6412.1	chr1	72874443	72874643	-	1	NA	NA	NA	322	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.045000	0.507463	37(CCTTTTCAAGGC,+,0.00)
mm_102619.1	chr11	62463236	62463436	-	1	NA	NA	NA	4876	NM_001039536	327942	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.000000	0.487562	
mm_114500.1	chr13	70292836	70293036	+	1	NA	NA	NA	60114	NR_036596	75086	Mm.390616	NR_036596		4930520P13Rik	-	RIKEN cDNA 4930520P13 gene	ncRNA	0.005000	0.482587	
mm_85073.1	chr9	91360971	91361171	-	1	NA	NA	NA	4728	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.025000	0.507463	
mm_67478.1	chr7	80598813	80599013	-	1	NA	NA	NA	-37104	NR_040343	100504375	Mm.322881	NR_040343	ENSMUSG00000084821	Gm15880	OTTMUSG00000027171	predicted gene 15880	ncRNA	0.020000	0.532338	
mm_20838.1	chr2	147362342	147362542	-	1	NA	NA	NA	351	NR_040330	99041	Mm.373081	NR_040330		AI646519	Aspax1|OTTMUSG00000015701	expressed sequence AI646519	ncRNA	0.065000	0.592040	
mm_157425.1	chrX	38564793	38564993	-	1	NA	NA	NA	11303	NM_028288	72584	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	0.095000	0.686567	
mm_99737.1	chr11	106374726	106374926	+	1	NA	NA	NA	0	NM_029345	75573	Mm.159539	NM_029345	ENSMUSG00000009210	Prr29	2310007L24Rik	proline rich 29	protein-coding	0.025000	0.621891	
mm_123069.1	chr14	55681697	55681897	-	1	NA	NA	NA	20	NM_145705	28113	Mm.29346	NM_145705	ENSMUSG00000007589	Tinf2	AW552114|D14Wsu146e|Tin2	Terf1 (TRF1)-interacting nuclear factor 2	protein-coding	0.085000	0.606965	
mm_152550.1	chr19	11387671	11387871	-	1	NA	NA	NA	12283	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.010000	0.373134	
mm_91476.1	chr10	34208164	34208364	-	1	NA	NA	NA	-713	NM_172508	212898	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.035000	0.432836	
mm_165397.1	chr2	135309086	135309286	+	1	NA	NA	NA	-93570	NR_040517	78805	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA	0.010000	0.308458	
mm_121168.1	chr14	103014390	103014590	+	1	NA	NA	NA	19313	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.000000	0.447761	
mm_24403.1	chr3	90359501	90359701	+	1	NA	NA	NA	17947	NM_139304	229542	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	0.000000	0.343284	
mm_74492.1	chr8	5085509	5085709	-	1	NA	NA	NA	19678	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.000000	0.298507	
mm_26202.1	chr3	138527167	138527367	+	1	NA	NA	NA	-1	NM_001313980	13684	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.100000	0.631841	
mm_31520.1	chr4	54946197	54946397	+	1	NA	NA	NA	-1648	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.050000	0.542289	
mm_21743.1	chr2	164803529	164803729	-	1	NA	NA	NA	1252	NM_133240	170789	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	0.015000	0.407960	
mm_155097.1	chrX	48274759	48274959	+	1	NA	NA	NA	10567	NR_045916	100500713	Mm.396609	NR_045916	ENSMUSG00000097197	9530027J09Rik	-	RIKEN cDNA 9530027J09 gene	ncRNA	0.020000	0.527363	
mm_172200.1	chr6	51470593	51470793	+	1	NA	NA	NA	77	NM_007624	12417	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	0.110000	0.701493	
mm_115339.1	chr13	112495149	112495349	+	1	NA	NA	NA	31179	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.015000	0.427861	-69(TTTTTTAAAGCT,+,0.00)
mm_118218.1	chr13	110280796	110280996	-	1	NA	NA	NA	-690	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding	0.025000	0.507463	
mm_40724.1	chr5	65975758	65975958	+	1	NA	NA	NA	8734	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.025000	0.651741	
mm_128058.1	chr15	26402214	26402414	-	1	NA	NA	NA	93266	NM_001310774	211147	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0.005000	0.522388	
mm_45827.1	chr5	87694495	87694695	-	1	NA	NA	NA	4830	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.507463	
mm_71876.1	chr8	69791139	69791339	+	1	NA	NA	NA	76	NM_133224	170759	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	0.095000	0.651741	
mm_68262.1	chr7	105592306	105592506	-	1	NA	NA	NA	7710	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.015000	0.522388	
mm_55806.1	chr6	82905099	82905299	-	1	NA	NA	NA	-23346	NR_040520	69652	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	0.050000	0.497512	
mm_133911.1	chr16	97554539	97554739	+	1	NA	NA	NA	18556	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.000000	0.482587	
mm_123216.1	chr14	59441006	59441206	-	1	NA	NA	NA	125	NM_026908	69008	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding	0.065000	0.651741	
mm_166160.1	chr5	16181178	16181378	+	1	NA	NA	NA	246587	NM_001110844	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.025000	0.512438	-33(CCATATAAAAAC,-,0.00)
mm_158379.1	chrX	135627588	135627788	-	1	NA	NA	NA	17	NM_029459	75829	Mm.159593	NM_029459	ENSMUSG00000031411	Prame	4930534P07Rik	preferentially expressed antigen in melanoma	protein-coding	0.035000	0.497512	
mm_82065.1	chr9	122805452	122805652	+	1	NA	NA	NA	5	NM_001013405	382117	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding	0.065000	0.641791	
mm_72246.1	chr8	75058208	75058408	+	1	NA	NA	NA	24622	NM_011622	21968	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.015000	0.512438	
mm_109149.1	chr12	107225437	107225637	+	1	NA	NA	NA	-509213	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.005000	0.442786	
mm_84543.1	chr9	67318485	67318685	-	1	NA	NA	NA	-81859	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	0.030000	0.532338	
mm_41903.1	chr5	105571170	105571370	+	1	NA	NA	NA	51799	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.000000	0.338308	
mm_90198.1	chr10	120227029	120227229	+	1	NA	NA	NA	69	NM_025431	66225	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.120000	0.686567	
mm_89664.1	chr10	97483378	97483578	+	1	NA	NA	NA	1147	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.010000	0.482587	
mm_49362.1	chr6	22926319	22926519	+	1	NA	NA	NA	50917	NM_001081306	19283	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding	0.005000	0.258706	
mm_99563.1	chr11	103774079	103774279	+	1	NA	NA	NA	4	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding	0.075000	0.626866	
mm_139865.1	chr17	70521869	70522069	+	1	NA	NA	NA	75	NM_001347413	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.015000	0.353234	
mm_150045.1	chr19	29380182	29380382	+	1	NA	NA	NA	12844	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.030000	0.522388	
mm_23718.1	chr3	69005638	69005838	+	1	NA	NA	NA	766	NM_133786	70099	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	0.055000	0.606965	
mm_51544.1	chr6	83207500	83207700	+	1	NA	NA	NA	21654	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.010000	0.497512	
mm_74350.1	chr8	127579601	127579801	+	1	NA	NA	NA	280049	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.025000	0.562189	
mm_42030.1	chr5	108312704	108312904	+	1	NA	NA	NA	-121	NM_001081234	433931	Mm.319881	NM_001081234	ENSMUSG00000029263	Pigg	Gpi7	phosphatidylinositol glycan anchor biosynthesis, class G	protein-coding	0.100000	0.686567	
mm_149345.1	chr19	10850402	10850602	+	1	NA	NA	NA	7958	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.000000	0.358209	
mm_123488.1	chr14	66077651	66077851	-	1	NA	NA	NA	18	NM_009618	11495	Mm.422850	NM_009618	ENSMUSG00000022039	Adam2	AI323749|Ftnb|Ph30-beta	a disintegrin and metallopeptidase domain 2	protein-coding	0.045000	0.646766	
mm_100002.1	chr11	114851507	114851707	+	1	NA	NA	NA	67	NM_001110338	70355	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.060000	0.592040	
mm_73749.1	chr8	114683841	114684041	+	1	NA	NA	NA	244289	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.020000	0.527363	
mm_134930.1	chr16	31039804	31040004	-	1	NA	NA	NA	41528	NM_198626	268880	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.015000	0.427861	
mm_145774.1	chr18	65050836	65051036	+	1	NA	NA	NA	27409	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.010000	0.517413	
mm_156633.1	chrX	155627968	155628168	+	1	NA	NA	NA	-4741	NM_001093750	211612	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	0.000000	0.273632	
mm_56461.1	chr6	98697574	98697774	-	1	NA	NA	NA	330624	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.010000	0.462687	
mm_77533.1	chr8	123025333	123025533	-	1	NA	NA	NA	16851	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.000000	0.472637	
mm_55317.1	chr6	55132886	55133086	-	1	NA	NA	NA	30	NM_009953	12922	Mm.236081	NM_009953	ENSMUSG00000003476	Crhr2	CRF-R2|CRFR2alpha|CRFR2beta|Crfr2	corticotropin releasing hormone receptor 2	protein-coding	0.030000	0.616915	
mm_35260.1	chr4	19881274	19881474	-	1	NA	NA	NA	41192	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.025000	0.497512	
mm_167726.1	chr9	101074594	101074794	+	1	NA	NA	NA	-68	NM_001100451	77853	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	male-specific lethal 2 homolog (Drosophila)	protein-coding	0.135000	0.761194	
mm_123162.1	chr14	57133314	57133514	-	1	NA	NA	NA	197	NM_001271663	14623	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	0.085000	0.691542	
mm_56109.1	chr6	87502672	87502872	-	1	NA	NA	NA	-6445	NM_175476	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.010000	0.492537	
mm_111130.1	chr12	81484946	81485146	-	1	NA	NA	NA	91	NM_001309809	66272	Mm.439970	NM_025461	ENSMUSG00000091803	Cox16	1810020G14Rik|1810055I05Rik|BB388670	cytochrome c oxidase assembly protein 16	protein-coding	0.080000	0.621891	
mm_164128.1	chr15	40655199	40655399	+	1	NA	NA	NA	257	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding	0.050000	0.621891	
mm_138264.1	chr17	34597760	34597960	+	1	NA	NA	NA	10	NR_073173	11596	Mm.3383	NM_007425	ENSMUSG00000015452	Ager	RAGE	advanced glycosylation end product-specific receptor	protein-coding	0.015000	0.616915	
mm_163044.1	chr11	54909543	54909743	-	1	NA	NA	NA	6789	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.035000	0.611940	
mm_126147.1	chr15	78349172	78349372	+	1	NA	NA	NA	673	NR_106138	102466845		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0.005000	0.597015	
mm_68671.1	chr7	118974525	118974725	-	1	NA	NA	NA	20586	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.005000	0.507463	-17(GACTTTAAGAGG,-,0.00)
mm_150848.1	chr19	44989225	44989425	+	1	NA	NA	NA	-19	NM_011976	26456	Mm.34404	NM_011976	ENSMUSG00000025207	Sema4g	AI507908|AW554132	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	protein-coding	0.115000	0.766169	
mm_139885.1	chr17	70830105	70830305	+	1	NA	NA	NA	16572	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.030000	0.472637	
mm_35452.1	chr4	40279312	40279512	-	1	NA	NA	NA	9	NM_001033305	230075	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	0.095000	0.661692	
mm_28413.1	chr3	90389756	90389956	-	1	NA	NA	NA	82	NM_001316688	26568	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	0.065000	0.636816	
mm_80042.1	chr9	69165600	69165800	+	1	NA	NA	NA	-124141	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.020000	0.507463	
mm_9369.1	chr1	172200473	172200673	-	1	NA	NA	NA	6231	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.005000	0.517413	
mm_20171.1	chr2	122306270	122306470	-	1	NA	NA	NA	7360	NM_001305262	213696	Mm.247121	NM_145395	ENSMUSG00000027224	Duoxa1	BC019755|Nip|Nip1	dual oxidase maturation factor 1	protein-coding	0.010000	0.552239	
mm_1133.1	chr1	60409688	60409888	+	1	NA	NA	NA	169	NM_001198570	329165	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	0.095000	0.661692	
mm_119576.1	chr14	50807829	50808029	+	1	NA	NA	NA	-17	NM_009632	11546	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0.080000	0.606965	
mm_20054.1	chr2	120313994	120314194	-	1	NA	NA	NA	71	NM_001024145	271844	Mm.24880	NM_001024145	ENSMUSG00000046971	Pla2g4f	4732472I07Rik|Gm647|Pla2zeta	phospholipase A2, group IVF	protein-coding	0.005000	0.582090	
mm_2079.1	chr1	87662023	87662223	+	1	NA	NA	NA	41811	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.020000	0.507463	
mm_97240.1	chr11	75679198	75679398	+	1	NA	NA	NA	39	NM_001277221	12928	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	0.140000	0.761194	
mm_164415.1	chr16	38399524	38399724	-	1	NA	NA	NA	33521	NM_134102	85031	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.020000	0.592040	
mm_154674.1	chrX	7884230	7884430	+	1	NA	NA	NA	86	NM_078484	22232	Mm.214976	NM_078484	ENSMUSG00000031156	Slc35a2	AI327289|Had-1|Had1|Sfc8|UGT|Ugalt	solute carrier family 35 (UDP-galactose transporter), member A2	protein-coding	0.085000	0.686567	
mm_100902.1	chr11	6199919	6200119	-	1	NA	NA	NA	432	NM_173748	209586	Mm.25321	NM_173748	ENSMUSG00000053838	Nudcd3	AI427847|BC024322|mKIAA1068	NudC domain containing 3	protein-coding	0.075000	0.661692	
mm_153103.1	chr19	32739681	32739881	-	1	NA	NA	NA	-17796	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.020000	0.467662	
mm_121972.1	chr14	25593871	25594071	-	1	NA	NA	NA	7167	NR_033492	77592	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0.020000	0.502488	
mm_21393.1	chr2	157566200	157566400	-	1	NA	NA	NA	61	NM_016916	53619	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0.110000	0.706468	
mm_18291.1	chr2	52676009	52676209	-	1	NA	NA	NA	34	NM_001285426	12298	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.105000	0.716418	
mm_110916.1	chr12	76246646	76246846	-	1	NA	NA	NA	0	NM_019784	80384	Mm.78551	NM_019784	ENSMUSG00000021056	Tex21	4931406F04Rik|4931412D23Rik|4931421K24Rik|tsec-2	testis expressed gene 21	protein-coding	0.015000	0.442786	
mm_21504.1	chr2	163541622	163541822	-	1	NA	NA	NA	-1	NR_027970	68314	Mm.46190	NM_197983	ENSMUSG00000046840	Hnf4aos	0610008F07Rik	hepatic nuclear factor 4 alpha, opposite strand	ncRNA	0.010000	0.547264	
mm_26149.1	chr3	138108978	138109178	+	1	NA	NA	NA	22299	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	0.020000	0.532338	
mm_60579.1	chr7	44482482	44482682	+	1	NA	NA	NA	-1935	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.557214	
mm_14620.1	chr2	136770035	136770235	+	1	NA	NA	NA	56685	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.015000	0.447761	
mm_129898.1	chr15	83595102	83595302	-	1	NA	NA	NA	-45	NM_183017	223723	Mm.46778	NM_183017	ENSMUSG00000016757	Ttll12	BC055368|D430005B17	tubulin tyrosine ligase-like family, member 12	protein-coding	0.105000	0.636816	
mm_49992.1	chr6	41047342	41047542	+	1	NA	NA	NA	-11933	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.497512	
mm_91650.1	chr10	42478396	42478596	-	1	NA	NA	NA	69	NM_145743	215951	Mm.89646	NM_145743	ENSMUSG00000038302	Lace1	CG8520	lactation elevated 1	protein-coding	0.065000	0.577114	
mm_17881.1	chr2	34961693	34961893	-	1	NA	NA	NA	-21	NM_001326601	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.010000	0.512438	
mm_63246.1	chr7	126586061	126586261	+	1	NA	NA	NA	-344	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.015000	0.587065	
mm_49009.1	chr6	4758321	4758521	+	1	NA	NA	NA	11115	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.005000	0.417910	
mm_85551.1	chr9	106685676	106685876	-	1	NA	NA	NA	40	NM_011573	21767	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.115000	0.766169	
mm_103758.1	chr11	80858197	80858397	-	1	NA	NA	NA	3	NR_110449	75043	Mm.410815	NR_110449	ENSMUSG00000086703	4930507D10Rik	-	RIKEN cDNA 4930507D10 gene	ncRNA	0.020000	0.442786	33(CATTTTAGAGGC,+,0.00)
mm_22045.1	chr2	168230270	168230470	-	1	NA	NA	NA	9	NM_010072	13480	Mm.422657	NM_010072	ENSMUSG00000078919	Dpm1	AI118379|AI194292	dolichol-phosphate (beta-D) mannosyltransferase 1	protein-coding	0.135000	0.686567	
mm_87406.1	chr10	45807437	45807637	+	1	NA	NA	NA	-167	NR_040624	320363	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	0.020000	0.482587	
mm_29367.1	chr3	108704398	108704598	-	1	NA	NA	NA	17801	NM_029522	76123	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0.015000	0.502488	
mm_123211.1	chr14	59407660	59407860	-	1	NA	NA	NA	-14248	NM_001164289	628705	Mm.479244	NM_001164289	ENSMUSG00000091144	Phf11c	EG628705|Gm6907|Phf11	PHD finger protein 11C	protein-coding	0.005000	0.333333	31(TCTTTTATATAG,+,0.00)
mm_40836.1	chr5	73006830	73007030	+	1	NA	NA	NA	26	NM_173403	231290	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	0.110000	0.716418	
mm_106268.1	chr11	117969300	117969500	-	1	NA	NA	NA	-34	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.130000	0.751244	
mm_115282.1	chr13	111807703	111807903	+	1	NA	NA	NA	1180	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.070000	0.626866	
mm_98055.1	chr11	85821829	85822029	+	1	NA	NA	NA	10459	NR_077059	69909	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.025000	0.522388	
mm_10790.1	chr2	24348472	24348672	+	1	NA	NA	NA	3201	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.005000	0.472637	
mm_159352.1	chr3	73057617	73057817	-	1	NA	NA	NA	-774	NM_198864	386750	Mm.331076	NM_198864	ENSMUSG00000048304	Slitrk3	-	SLIT and NTRK-like family, member 3	protein-coding	0.100000	0.686567	
mm_93028.1	chr10	88135713	88135913	-	1	NA	NA	NA	11128	NM_029249	75317	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	0.050000	0.547264	15(TGCTTTAAAAAA,-,0.00)
mm_10741.1	chr2	23069131	23069331	+	1	NA	NA	NA	159	NM_001102438	74159	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.055000	0.606965	
mm_120264.1	chr14	63122355	63122555	+	1	NA	NA	NA	-7	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.075000	0.666667	
mm_39652.1	chr5	24696985	24697185	+	1	NA	NA	NA	11270	NM_001305264	53312	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0.030000	0.517413	
mm_135895.1	chr16	65515003	65515203	-	1	NA	NA	NA	-5526	NM_008849	18736	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.005000	0.348259	
mm_49037.1	chr6	4759872	4760072	+	1	NA	NA	NA	12666	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.015000	0.417910	-22(CCTTTAAGGCCG,+,0.00)
mm_133440.1	chr16	87719040	87719240	+	1	NA	NA	NA	20186	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.035000	0.512438	
mm_27661.1	chr3	65295813	65296013	-	1	NA	NA	NA	6772	NR_126080	102637797	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	0.005000	0.457711	
mm_62907.1	chr7	117389949	117390149	+	1	NA	NA	NA	9070	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.005000	0.427861	
mm_168406.1	chr11	30159199	30159399	-	1	NA	NA	NA	38958	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.025000	0.487562	
mm_99631.1	chr11	105164601	105164801	+	1	NA	NA	NA	-14106	NM_001294331	24086	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	0.025000	0.572139	
mm_16488.1	chr2	180967531	180967731	+	1	NA	NA	NA	331	NM_001177706	228998	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	0.065000	0.656716	
mm_150982.1	chr19	46514524	46514724	+	1	NA	NA	NA	12976	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.045000	0.666667	
mm_96075.1	chr11	59848202	59848402	+	1	NA	NA	NA	229	NM_134029	103850	Mm.41761	NM_134029	ENSMUSG00000032615	Nt5m	2010013E09Rik|AI846937|dNT-2	5',3'-nucleotidase, mitochondrial	protein-coding	0.125000	0.716418	
mm_117748.1	chr13	95892183	95892383	-	1	NA	NA	NA	-361	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.040000	0.587065	
mm_72492.1	chr8	83715164	83715364	+	1	NA	NA	NA	87	NM_197982	68278	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	0.090000	0.626866	-100(GTCCTTATAAAC,-,0.00),-98(CCTTATAAACCA,+,0.00)
mm_99691.1	chr11	106084452	106084652	+	1	NA	NA	NA	-350	NM_011947	26406	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.050000	0.587065	
mm_133084.1	chr16	60042250	60042450	+	1	NA	NA	NA	-402941	NM_001347244	56297	Mm.392505	NM_019665	ENSMUSG00000022722	Arl6	1110018H24Rik|2210411E14Rik|BBS3	ADP-ribosylation factor-like 6	protein-coding	0.010000	0.313433	
mm_93570.1	chr10	116559233	116559433	-	1	NA	NA	NA	22178	NM_001037848	72068	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.005000	0.383085	
mm_134218.1	chr16	11254002	11254202	-	1	NA	NA	NA	223	NM_001130008	14852	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	0.080000	0.681592	
mm_83307.1	chr9	44041080	44041280	-	1	NA	NA	NA	-2204	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.005000	0.537313	
mm_144794.1	chr18	35964999	35965199	+	1	NA	NA	NA	269	NR_110349	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.070000	0.696517	
mm_120784.1	chr14	74683506	74683706	+	1	NA	NA	NA	42766	NM_172812	15558	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	0.005000	0.393035	
mm_52949.1	chr6	122969348	122969548	+	1	NA	NA	NA	16804	NM_153197	73149	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.005000	0.407960	
mm_143186.1	chr17	58932433	58932633	-	1	NA	NA	NA	58842	NM_027001	69239	Mm.246732	NM_027001	ENSMUSG00000024227	Pdzph1	2610034M16Rik|AV114557	PDZ and pleckstrin homology domains 1	protein-coding	0.010000	0.477612	
mm_159760.1	chr5	92082756	92082956	-	1	NA	NA	NA	61	NM_001080797	23881	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.060000	0.547264	
mm_39922.1	chr5	31562618	31562818	+	1	NA	NA	NA	8679	NR_102275	100740	Mm.23370	NR_102275		AI839979	-	expressed sequence AI839979	ncRNA	0.010000	0.467662	
mm_123715.1	chr14	69827847	69828047	-	1	NA	NA	NA	-12460	NM_028560	73523	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0.000000	0.532338	
mm_135064.1	chr16	34175721	34175921	-	1	NA	NA	NA	-208818	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.020000	0.552239	
mm_55729.1	chr6	76902242	76902442	-	1	NA	NA	NA	-340375	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.015000	0.467662	-63(CCTTTTATGAGG,+,0.00)
mm_49745.1	chr6	34745898	34746098	+	1	NA	NA	NA	-34434	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.015000	0.482587	
mm_115894.1	chr13	22035498	22035698	-	1	NA	NA	NA	45	NM_175659	319168	Mm.250564	NM_175659	ENSMUSG00000069302	Hist1h2ah	-	histone cluster 1, H2ah	protein-coding	0.050000	0.482587	-33(GACTATAAAAAT,-,0.00)
mm_9439.1	chr1	172558033	172558233	-	1	NA	NA	NA	-1773	NR_027644	240916	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	0.020000	0.552239	
mm_148929.1	chr19	7017820	7018020	+	1	NA	NA	NA	1549	NM_153795	108101	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.015000	0.537313	
mm_81260.1	chr9	107997916	107998116	+	1	NA	NA	NA	-4632	NM_013785	27399	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0.010000	0.532338	
mm_7497.1	chr1	121359770	121359970	-	1	NA	NA	NA	-27281	NM_178082	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.030000	0.547264	
mm_114409.1	chr13	64203907	64204107	+	1	NA	NA	NA	42141	NM_019986	56541	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	0.020000	0.437811	
mm_164086.1	chr15	7173748	7173948	+	1	NA	NA	NA	33306	NM_013584	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.005000	0.278607	-58(AACTATATATGG,-,0.00)
mm_147467.1	chr18	46713471	46713671	-	1	NA	NA	NA	14771	NM_033037	12583	Mm.241056	NM_033037	ENSMUSG00000033022	Cdo1	1300002L19Rik|Cdo|D18Ucla3	cysteine dioxygenase 1, cytosolic	protein-coding	0.005000	0.407960	-98(GTTTTTAAGGAC,+,0.00)
mm_160994.1	chr11	109473166	109473366	+	1	NA	NA	NA	-37	NM_134038	104681	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.150000	0.771144	
mm_162109.1	chrX	50426279	50426479	-	1	NA	NA	NA	115	NM_146292	258289	Mm.451653	NM_146292	ENSMUSG00000048173	Olfr1324	MOR128-2	olfactory receptor 1324	protein-coding	0.000000	0.442786	
mm_152567.1	chr19	11588615	11588815	-	1	NA	NA	NA	16089	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.025000	0.432836	
mm_34202.1	chr4	140906273	140906473	+	1	NA	NA	NA	13	NM_008812	18600	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	0.095000	0.666667	
mm_83077.1	chr9	39603477	39603677	-	1	NA	NA	NA	75	NM_001199556	244810	Mm.208855	NM_178737	ENSMUSG00000038112	AW551984	3222402N16	expressed sequence AW551984	protein-coding	0.025000	0.577114	
mm_168743.1	chr12	115359490	115359690	-	1	NA	NA	NA	336204	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.000000	0.432836	
mm_53000.1	chr6	123269217	123269417	+	1	NA	NA	NA	7210	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.000000	0.303483	81(CTTTTTAAGAGC,+,0.00)
mm_102380.1	chr11	58889200	58889400	-	1	NA	NA	NA	14925	NM_011758	22698	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	0.000000	0.343284	-77(CCCCATTTAAGA,-,0.00)
mm_114322.1	chr13	60601880	60602080	+	1	NA	NA	NA	33	NM_029653	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.170000	0.810945	
mm_12331.1	chr2	69646743	69646943	+	1	NA	NA	NA	-412	NM_028284	72569	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	0.025000	0.497512	
mm_118105.1	chr13	103920440	103920640	-	1	NA	NA	NA	46	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.125000	0.701493	
mm_93186.1	chr10	93889616	93889816	-	1	NA	NA	NA	1486	NM_019648	56307	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	0.100000	0.666667	
mm_68648.1	chr7	118491651	118491851	-	1	NA	NA	NA	224	NM_001033380	319622	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	0.105000	0.701493	
mm_124114.1	chr14	79480950	79481150	-	1	NA	NA	NA	-144	NM_007920	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.145000	0.736318	
mm_39005.1	chr4	151996078	151996278	-	1	NA	NA	NA	1	NM_172705	230936	Mm.25582	NM_172705	ENSMUSG00000047777	Phf13	BC029632|Phf5|SPOC1	PHD finger protein 13	protein-coding	0.120000	0.691542	
mm_84829.1	chr9	78205879	78206079	-	1	NA	NA	NA	14013	NM_010357	14860	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	0.010000	0.457711	1(GGTTTTAAATGG,-,0.00)
mm_165501.1	chr2	167588896	167589096	+	1	NA	NA	NA	43009	NM_001311146	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.045000	0.621891	
mm_111311.1	chr12	85817783	85817983	-	1	NA	NA	NA	6662	NM_021446	58520	Mm.143795	NM_021446	ENSMUSG00000021252	0610007P14Rik	1190004E09Rik|AU019315|C77855|ORF11	RIKEN cDNA 0610007P14 gene	protein-coding	0.025000	0.522388	
mm_56716.1	chr6	115484387	115484587	-	1	NA	NA	NA	-60217	NM_199033	381802	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.010000	0.402985	-66(GTCCTTTAAAGG,-,0.00),-65(TCCTTTAAAGGG,+,0.00),-65(TCCTTTAAAGGG,-,0.00),-64(CCTTTAAAGGGA,+,0.00)
mm_119802.1	chr14	54218732	54218932	+	1	NA	NA	NA	35097	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.512438	
mm_131970.1	chr16	24737354	24737554	+	1	NA	NA	NA	15599	NM_001145954	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.015000	0.477612	
mm_87033.1	chr10	28668370	28668570	+	1	NA	NA	NA	110	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.010000	0.527363	
mm_11278.1	chr2	30061994	30062194	+	1	NA	NA	NA	98	NM_023871	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.065000	0.636816	
mm_2320.1	chr1	92049043	92049243	+	1	NA	NA	NA	131198	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.000000	0.452736	
mm_133602.1	chr16	91484960	91485160	+	1	NA	NA	NA	-155	NM_010508	15975	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	CD118|Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.075000	0.646766	
mm_172856.1	chr9	40423592	40423792	-	1	NA	NA	NA	32072	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.015000	0.487562	
mm_127787.1	chr15	3542524	3542724	-	1	NA	NA	NA	39218	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.000000	0.417910	
mm_136892.1	chr17	13012023	13012223	+	1	NA	NA	NA	4284	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.010000	0.407960	-22(TTCTATTTAGGG,-,0.00)
mm_491.1	chr1	36771242	36771442	+	1	NA	NA	NA	4408	NM_001289765	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.010000	0.552239	
mm_61614.1	chr7	80082279	80082479	+	1	NA	NA	NA	-7122	NR_045695	100859962	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.040000	0.601990	
mm_131436.1	chr16	15892138	15892338	+	1	NA	NA	NA	4952	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.005000	0.373134	
mm_141644.1	chr17	33394568	33394768	-	1	NA	NA	NA	-31	NM_009542	22643	Mm.4417	NM_009542	ENSMUSG00000055240	Zfp101	AI316498|AI325003	zinc finger protein 101	protein-coding	0.035000	0.477612	
mm_24816.1	chr3	95624896	95625096	+	1	NA	NA	NA	16	NM_001026212	56205	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.055000	0.592040	
mm_142212.1	chr17	37023179	37023379	-	1	NA	NA	NA	119	NM_010814	17441	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	0.020000	0.582090	
mm_159392.1	chr3	93442263	93442463	+	1	NA	NA	NA	33	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.005000	0.343284	
mm_109392.1	chr12	109747962	109748162	+	1	NA	NA	NA	184	NR_037233	100499517		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	0.045000	0.487562	
mm_104350.1	chr11	94297031	94297231	-	1	NA	NA	NA	24780	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.025000	0.412935	
mm_136408.1	chr16	93751846	93752046	-	1	NA	NA	NA	40039	NM_027293	70028	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0.010000	0.562189	
mm_62092.1	chr7	94042624	94042824	+	1	NA	NA	NA	962845	NM_021427	58238	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.040000	0.532338	
mm_171232.1	chr3	66994539	66994739	+	1	NA	NA	NA	8967	NM_025822	66880	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	0.050000	0.527363	
mm_126699.1	chr15	85042623	85042823	+	1	NA	NA	NA	5661	NM_133750	73225	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0.005000	0.437811	-30(GTGTTTATAAAG,-,0.00),-28(GTTTATAAAGAA,+,0.00)
mm_54777.1	chr6	41541163	41541363	-	1	NA	NA	NA	19487	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.000000	0.298507	
mm_56709.1	chr6	115251783	115251983	-	1	NA	NA	NA	-34	NM_080639	110595	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	TIMP-4	tissue inhibitor of metalloproteinase 4	protein-coding	0.020000	0.611940	1(CCTCATAAAGAC,+,0.00)
mm_121732.1	chr14	18270872	18271072	-	1	NA	NA	NA	14	NM_025586	66480	Mm.2050	NM_025586	ENSMUSG00000012405	Rpl15	2510008H07Rik	ribosomal protein L15	protein-coding	0.080000	0.636816	
mm_24351.1	chr3	89963345	89963545	+	1	NA	NA	NA	-113	NM_001081182	54667	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	0.080000	0.661692	
mm_57804.1	chr6	129385404	129385604	-	1	NA	NA	NA	-1	NM_027709	71183	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	0.015000	0.442786	-60(TCCTTGAAAAGG,-,0.00)
mm_132369.1	chr16	34807167	34807367	+	1	NA	NA	NA	22317	NM_139300	107589	Mm.33360	NM_139300	ENSMUSG00000022836	Mylk	9530072E15Rik|A930019C19Rik|AW489456|KRP|MLCK108|MLCK210|Mlck|nmMlck|smMLCK	myosin, light polypeptide kinase	protein-coding	0.035000	0.587065	
mm_28295.1	chr3	89094758	89094958	-	1	NA	NA	NA	-1495	NM_028188	72296	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.040000	0.527363	
mm_114969.1	chr13	97199334	97199534	+	1	NA	NA	NA	-1077	NM_010422	15212	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.010000	0.477612	
mm_83106.1	chr9	40346023	40346223	-	1	NA	NA	NA	12651	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.020000	0.527363	
mm_88677.1	chr10	80047156	80047356	+	1	NA	NA	NA	90	NR_110342	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.010000	0.587065	
mm_57031.1	chr6	122323471	122323671	-	1	NA	NA	NA	14561	NM_010749	17113	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	0.000000	0.597015	
mm_51540.1	chr6	83195908	83196108	+	1	NA	NA	NA	10062	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.050000	0.621891	
mm_142750.1	chr17	48451394	48451594	-	1	NA	NA	NA	7	NM_027292	70026	Mm.22613	NM_027292	ENSMUSG00000023995	Tspo2	2510027D20Rik|Bzrpl1	translocator protein 2	protein-coding	0.020000	0.547264	
mm_36342.1	chr4	72903614	72903814	-	1	NA	NA	NA	-51080	NM_001199270	353204	Mm.317892	NM_001199270	ENSMUSG00000059343	Aldoart1	4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2	aldolase 1 A, retrogene 1	protein-coding	0.000000	0.353234	
mm_100506.1	chr11	120491839	120492039	+	1	NA	NA	NA	102	NM_013770	27376	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0.110000	0.716418	
mm_143113.1	chr17	57205432	57205632	-	1	NA	NA	NA	-11351	NM_019418	50930	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0.010000	0.611940	
mm_64561.1	chr7	144837966	144838166	+	1	NA	NA	NA	-546	NM_008007	14174	Mm.4947	NM_008007	ENSMUSG00000031074	Fgf3	Fgf-3|Int-2|Int-P	fibroblast growth factor 3	protein-coding	0.060000	0.601990	
mm_149122.1	chr19	8989233	8989433	+	1	NA	NA	NA	49	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.110000	0.741294	
mm_130720.1	chr15	101078275	101078475	-	1	NA	NA	NA	-23976	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.130000	0.800995	
mm_79279.1	chr9	50775278	50775478	+	1	NA	NA	NA	153	NR_045601	102580	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	0.135000	0.691542	
mm_67515.1	chr7	80815759	80815959	-	1	NA	NA	NA	-12528	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.020000	0.417910	
mm_160074.1	chr7	6995488	6995688	+	1	NA	NA	NA	203	NM_001080965	20871	Mm.261572	NM_020572	ENSMUSG00000070837	Aurkc	AIE1|AIK3|ARK-3|IAK3|Stk13	aurora kinase C	protein-coding	0.035000	0.562189	
mm_145149.1	chr18	46225930	46226130	+	1	NA	NA	NA	-13423	NM_178872	28105	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.015000	0.537313	
mm_169619.1	chr15	38243743	38243943	-	1	NA	NA	NA	24640	NM_008757	18285	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0.040000	0.497512	
mm_49891.1	chr6	38918368	38918568	+	1	NA	NA	NA	-518	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.025000	0.442786	
mm_155330.1	chrX	65437383	65437583	+	1	NA	NA	NA	389839	NM_027302	70062	Mm.45791	NM_027302	ENSMUSG00000031181	Ctag2	1700030B21Rik	cancer/testis antigen 2	protein-coding	0.000000	0.472637	73(CCTTATCTGGCC,+,0.00)
mm_159373.1	chr3	88846316	88846516	+	1	NA	NA	NA	11185	NM_001242372	76022	Mm.126870	NM_027389	ENSMUSG00000054199	Gon4l	1500041I23Rik|2610100B20Rik|3632445O20Rik|5430404N14Rik|AA387005	gon-4-like (C.elegans)	protein-coding	0.020000	0.497512	
mm_37893.1	chr4	132535332	132535532	-	1	NA	NA	NA	-18	NM_007512	11983	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0.030000	0.442786	
mm_72150.1	chr8	72144553	72144753	+	1	NA	NA	NA	9361	NM_001001491	326618	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	0.020000	0.522388	
mm_62265.1	chr7	99535064	99535264	+	1	NA	NA	NA	-322	NM_178220	109689	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	0.050000	0.606965	
mm_141558.1	chr17	32214591	32214791	-	1	NA	NA	NA	-25142	NM_001347341	71932	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9	epoxide hydrolase 3	protein-coding	0.030000	0.552239	
mm_121855.1	chr14	20664471	20664671	-	1	NA	NA	NA	3	NM_001310432	68760	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	0.005000	0.577114	24(GGGCTTTAAAGG,-,0.00),25(GGCTTTAAAGGG,-,0.00),26(GCTTTAAAGGGC,+,0.00),27(CTTTAAAGGGCC,+,0.00)
mm_22865.1	chr3	28781225	28781425	+	1	NA	NA	NA	14	NM_177586	208691	Mm.193670	NM_177586	ENSMUSG00000050192	Eif5a2	9630038B20|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding	0.155000	0.810945	
mm_52497.1	chr6	115134841	115135041	+	1	NA	NA	NA	39	NM_001111015	20965	Mm.441431	NM_013681	ENSMUSG00000009394	Syn2	2900074L19Rik|AI836018|AI841723	synapsin II	protein-coding	0.130000	0.746269	
mm_93597.1	chr10	117148429	117148629	-	1	NA	NA	NA	-55	NM_177798	327826	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0.075000	0.716418	
mm_153324.1	chr19	38123955	38124155	-	1	NA	NA	NA	756	NM_011255	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.025000	0.527363	
mm_71527.1	chr8	46852674	46852874	+	1	NA	NA	NA	113029	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.025000	0.527363	
mm_102378.1	chr11	58802107	58802307	-	1	NA	NA	NA	-247	NM_029283	75429	Mm.296819	NM_029283	ENSMUSG00000049154	Fam183b	3100002J23Rik|Theg6	family with sequence similarity 183, member B	protein-coding	0.015000	0.547264	
mm_106930.1	chr12	8519615	8519815	+	1	NA	NA	NA	-19730	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.025000	0.507463	89(CCATTTAGGGGA,+,0.00)
mm_142220.1	chr17	37185383	37185583	-	1	NA	NA	NA	-8409	NM_023137	24108	Mm.140210	NM_023137	ENSMUSG00000035186	Ubd	FAT10	ubiquitin D	protein-coding	0.010000	0.442786	
mm_42749.1	chr5	120753969	120754169	+	1	NA	NA	NA	-4221	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.000000	0.363184	
mm_4272.1	chr1	171559096	171559296	+	1	NA	NA	NA	3	NM_018729	18106	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0.015000	0.547264	
mm_19638.1	chr2	102829297	102829497	-	1	NA	NA	NA	72268	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.010000	0.457711	
mm_42557.1	chr5	117120091	117120291	+	1	NA	NA	NA	62	NM_001199685	330177	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.130000	0.746269	
mm_30618.1	chr4	8535735	8535935	+	1	NA	NA	NA	191	NM_021518	59021	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0.155000	0.751244	
mm_171809.1	chr5	131050191	131050391	+	1	NA	NA	NA	257231	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.030000	0.482587	
mm_154318.1	chrM	2072	2272	+	1	NA	NA	NA	NA	NA									0.020000	0.338308	
mm_74516.1	chr8	8690416	8690616	-	1	NA	NA	NA	21	NM_176849	234023	Mm.251655	NM_176849	ENSMUSG00000040459	Arglu1	9430010O03Rik|C130008N12	arginine and glutamate rich 1	protein-coding	0.150000	0.766169	
mm_37276.1	chr4	118636252	118636452	-	1	NA	NA	NA	9948	NR_029469	100041290	Mm.472885	NR_029469		D4Ertd617e	-	DNA segment, Chr 4, ERATO Doi 617, expressed	ncRNA	0.035000	0.537313	
mm_130793.1	chr15	101690108	101690308	-	1	NA	NA	NA	4097	NM_008476	16687	Mm.302399	NM_008476	ENSMUSG00000058354	Krt6a	2310016L08Rik|Krt2-6a|Krt2-6c|MK6a|mK6[a]	keratin 6A	protein-coding	0.005000	0.477612	-81(CTCTTTATAGTC,+,0.00)
mm_101233.1	chr11	20464564	20464764	-	1	NA	NA	NA	-78589	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.025000	0.567164	
mm_114455.1	chr13	67128104	67128304	+	1	NA	NA	NA	-24	NM_172392	268670	Mm.56274	NM_172392	ENSMUSG00000057396	Zfp759	BC028265|Rslcan-8|Rslcan8	zinc finger protein 759	protein-coding	0.030000	0.472637	
mm_99257.1	chr11	101179998	101180198	+	1	NA	NA	NA	3981	NM_016782	53321	Mm.474527	NM_016782	ENSMUSG00000017167	Cntnap1	AI841080|Caspr|NCP1|Nrxn4|p190|shm	contactin associated protein-like 1	protein-coding	0.010000	0.373134	
mm_21840.1	chr2	165802450	165802650	-	1	NA	NA	NA	55623	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.005000	0.542289	
mm_98295.1	chr11	89092208	89092408	+	1	NA	NA	NA	18467	NM_001033266	217071	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	0.005000	0.378109	
mm_169490.1	chr14	74783184	74783384	-	1	NA	NA	NA	50987	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.035000	0.552239	
mm_133383.1	chr16	84772906	84773106	+	1	NA	NA	NA	-1117	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.005000	0.323383	
mm_17008.1	chr2	18867134	18867334	-	1	NA	NA	NA	-65416	NR_131254	66774	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.000000	0.457711	
mm_110679.1	chr12	67059326	67059526	-	1	NA	NA	NA	163123	NM_001193266	320772	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	0.030000	0.402985	
mm_94837.1	chr11	23665324	23665524	+	1	NA	NA	NA	-250	NM_028956	74467	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.065000	0.562189	
mm_22408.1	chr2	181313176	181313376	-	1	NA	NA	NA	1224	NM_009133	20262	Mm.2319	NM_009133	ENSMUSG00000027581	Stmn3	9330161A03Rik|AI604839|R75323|Sclip	stathmin-like 3	protein-coding	0.020000	0.532338	53(CCTCTAAGAGCC,+,0.00)
mm_29410.1	chr3	108911617	108911817	-	1	NA	NA	NA	-13	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.105000	0.656716	
mm_111271.1	chr12	85331401	85331601	-	1	NA	NA	NA	7861	NM_145138	217718	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.010000	0.437811	
mm_140007.1	chr17	73126479	73126679	+	1	NA	NA	NA	18594	NM_001177967	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.010000	0.507463	
mm_44457.1	chr5	22344603	22344803	-	1	NA	NA	NA	2	NM_011261	19699	Mm.425236	NM_011261	ENSMUSG00000042453	Reln	reeler|rl	reelin	protein-coding	0.180000	0.820896	-36(GGCTTTAAGAAG,-,0.00)
mm_131449.1	chr16	16306381	16306581	+	1	NA	NA	NA	3516	NM_198246	70120	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	0.015000	0.422886	
mm_54678.1	chr6	39419477	39419677	-	1	NA	NA	NA	199	NM_001311109	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.085000	0.547264	
mm_60534.1	chr7	44480240	44480440	+	1	NA	NA	NA	-4177	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.517413	
mm_118647.1	chr14	21560858	21561058	+	1	NA	NA	NA	61173	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.010000	0.437811	
mm_80792.1	chr9	96119330	96119530	+	1	NA	NA	NA	1	NM_177352	235533	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	0.145000	0.736318	
mm_56387.1	chr6	94681589	94681789	-	1	NA	NA	NA	18456	NM_008377	16206	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.025000	0.462687	
mm_17702.1	chr2	32381765	32381965	-	1	NA	NA	NA	50	NM_198001	73737	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0.145000	0.731343	
mm_85372.1	chr9	103222087	103222287	-	1	NA	NA	NA	8099	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.000000	0.417910	
mm_150929.1	chr19	46304660	46304860	+	1	NA	NA	NA	23	NM_001177369	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.075000	0.636816	
mm_67177.1	chr7	73597245	73597445	-	1	NA	NA	NA	-38950	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.005000	0.402985	-23(GGGTATTTAAAC,-,0.00)
mm_20537.1	chr2	131054433	131054633	-	1	NA	NA	NA	9281	NR_136922	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.080000	0.656716	
mm_163152.1	chr11	83603617	83603817	+	1	NA	NA	NA	-10630	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.010000	0.427861	
mm_115464.1	chr13	119428824	119429024	+	1	NA	NA	NA	22	NM_145457	218693	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0.155000	0.820896	
mm_13224.1	chr2	97467449	97467649	+	1	NA	NA	NA	-108	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.035000	0.442786	
mm_164571.1	chr17	23599387	23599587	-	1	NA	NA	NA	0	NM_011747	22654	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	4933429B21|AI835008|Krox-8|Rhit|Zfp-13	zinc finger protein 13	protein-coding	0.035000	0.567164	
mm_77205.1	chr8	113854790	113854990	-	1	NA	NA	NA	-6051	NM_172466	208936	Mm.167471	NM_172466	ENSMUSG00000053399	Adamts18	9630038L21|ADAMTS21|E130314N14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	protein-coding	0.010000	0.507463	
mm_42798.1	chr5	121711812	121712012	+	1	NA	NA	NA	303	NM_009125	20239	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.175000	0.805970	
mm_138081.1	chr17	33975389	33975589	+	1	NA	NA	NA	3302	NR_004446	630499	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	0.005000	0.507463	
mm_28008.1	chr3	83031497	83031697	-	1	NA	NA	NA	5444	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.045000	0.502488	
mm_158371.1	chrX	135035984	135036184	-	1	NA	NA	NA	518	NR_040281	320606	Mm.439072	NR_040281	ENSMUSG00000089759	3632454L22Rik	-	RIKEN cDNA 3632454L22 gene	ncRNA	0.075000	0.651741	
mm_57213.1	chr6	122856004	122856204	-	1	NA	NA	NA	53	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.020000	0.502488	
mm_159466.1	chr4	5772768	5772968	+	1	NA	NA	NA	128689	NM_173426	242297	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0.020000	0.512438	
mm_9308.1	chr1	171640973	171641173	-	1	NA	NA	NA	827	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.025000	0.422886	
mm_134617.1	chr16	21063049	21063249	-	1	NA	NA	NA	90795	NM_025634	66561	Mm.422867	NM_025634	ENSMUSG00000090356	Teddm3	2310042E22Rik	transmembrane epididymal family member 3	protein-coding	0.005000	0.537313	
mm_118600.1	chr14	20702960	20703160	+	1	NA	NA	NA	33	NM_025366	66121	Mm.246996	NM_025366	ENSMUSG00000063787	Chchd1	1110001O19Rik|2400010G13Rik|MRP-S37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding	0.115000	0.626866	
mm_173113.1	chrX	158901573	158901773	+	1	NA	NA	NA	-354109	NM_148945	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	0.015000	0.512438	
mm_163477.1	chr12	104988664	104988864	-	1	NA	NA	NA	9913	NM_001042699	212073	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.005000	0.472637	
mm_76248.1	chr8	83594361	83594561	-	1	NA	NA	NA	30	NM_027179	106529	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	0.065000	0.636816	
mm_104960.1	chr11	100142097	100142297	-	1	NA	NA	NA	1502	NM_001313963	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.045000	0.582090	
mm_149576.1	chr19	13054701	13054901	+	1	NA	NA	NA	-8612	NM_146692	258687	Mm.271528	NM_146692	ENSMUSG00000094986	Olfr1454	MOR202-14	olfactory receptor 1454	protein-coding	0.025000	0.437811	
mm_7610.1	chr1	126492769	126492969	-	1	NA	NA	NA	58	NM_172484	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.060000	0.676617	
mm_157685.1	chrX	60147753	60147953	-	1	NA	NA	NA	-153	NM_001289730	109904	Mm.93796	NM_133197	ENSMUSG00000031139	Mcf2	B230117G22Rik|Dbl|Mcf-2	mcf.2 transforming sequence	protein-coding	0.010000	0.432836	
mm_32568.1	chr4	109753506	109753706	+	1	NA	NA	NA	76979	NM_007983	14084	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	0.005000	0.318408	
mm_29704.1	chr3	123236046	123236246	-	1	NA	NA	NA	3	NM_080451	118449	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	0.080000	0.671642	
mm_165071.1	chr19	44407491	44407691	-	1	NA	NA	NA	118	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.040000	0.572139	-59(GCCGATAAAAGG,-,0.00),-3(CCCTTTAAAATC,+,0.00),-2(CCTTTAAAATCC,+,0.00)
mm_62455.1	chr7	101451184	101451384	+	1	NA	NA	NA	32	NM_001243757	207728	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.125000	0.756219	
mm_101691.1	chr11	40737243	40737443	-	1	NA	NA	NA	3682	NM_001290697	52653	Mm.276504	NM_026023	ENSMUSG00000020328	Nudcd2	-	NudC domain containing 2	protein-coding	0.025000	0.527363	
mm_57615.1	chr6	128143460	128143660	-	1	NA	NA	NA	18	NM_175414	109246	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597	tetraspanin 9	protein-coding	0.150000	0.820896	
mm_112131.1	chr12	112951480	112951680	-	1	NA	NA	NA	-9438	NM_001316724	66174	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0.010000	0.492537	
mm_39476.1	chr5	20228097	20228297	+	1	NA	NA	NA	320679	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.010000	0.393035	
mm_89078.1	chr10	83344034	83344234	+	1	NA	NA	NA	-6317	NM_177388	338365	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.000000	0.557214	
mm_155138.1	chrX	50841305	50841505	+	1	NA	NA	NA	34	NM_001313744	70415	Mm.46254	NM_133729	ENSMUSG00000031112	Stk26	2610018G03Rik|Mst4	serine/threonine kinase 26	protein-coding	0.070000	0.686567	
mm_122044.1	chr14	30019811	30020011	-	1	NA	NA	NA	-1392	NM_172264	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.010000	0.452736	
mm_13846.1	chr2	119547710	119547910	+	1	NA	NA	NA	103	NM_019769	56398	Mm.214765	NM_019769	ENSMUSG00000014077	Chp1	1500003O03Rik|AA960066|AI046351|Cahp|Chp|Sid470p|p24|vac	calcineurin-like EF hand protein 1	protein-coding	0.065000	0.641791	
mm_140316.1	chr17	86338489	86338689	+	1	NA	NA	NA	-51411	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.005000	0.502488	
mm_79906.1	chr9	65412826	65413026	+	1	NA	NA	NA	9847	NM_178933	330962	Mm.335247	NM_178933	ENSMUSG00000053862	Slc51b	Ostb	solute carrier family 51, beta subunit	protein-coding	0.010000	0.447761	
mm_171870.1	chr5	28538393	28538593	+	1	NA	NA	NA	-71392	NM_009170	20423	Mm.57202	NM_009170	ENSMUSG00000002633	Shh	9530036O11Rik|Dsh|Hhg1|Hx|Hxl3|M100081	sonic hedgehog	protein-coding	0.030000	0.447761	
mm_23022.1	chr3	34638122	34638322	+	1	NA	NA	NA	-242	NR_035433	100316679		NR_035433	ENSMUSG00000104797	Mir1897	Mirn1897|mmu-mir-1897	microRNA 1897	ncRNA	0.010000	0.447761	
mm_54954.1	chr6	48684362	48684562	-	1	NA	NA	NA	-116	NM_001243200	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.015000	0.497512	
mm_68890.1	chr7	126448241	126448441	-	1	NA	NA	NA	14732	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.030000	0.542289	
mm_67438.1	chr7	80387273	80387473	-	1	NA	NA	NA	573	NM_010194	14159	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.035000	0.557214	
mm_164839.1	chr18	42052361	42052561	+	1	NA	NA	NA	-1249	NM_172966	269016	Mm.45472	NM_172966	ENSMUSG00000057719	Sh3rf2	2310046K19|9130023G24Rik|AI452083|Ppp1r39|RNF158	SH3 domain containing ring finger 2	protein-coding	0.010000	0.562189	
mm_67836.1	chr7	98361400	98361600	-	1	NA	NA	NA	-172	NM_001168539	244152	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.065000	0.631841	-6(CTTTTTAGACGC,+,0.00)
mm_53553.1	chr6	136873076	136873276	+	1	NA	NA	NA	2647	NM_008597	17313	Mm.243085	NM_008597	ENSMUSG00000030218	Mgp	Mglap	matrix Gla protein	protein-coding	0.025000	0.452736	
mm_44757.1	chr5	31526575	31526775	-	1	NA	NA	NA	87	NM_028150	72195	Mm.164187	NM_028150	ENSMUSG00000053134	Supt7l	2610524B01Rik|6030455L14Rik	suppressor of Ty 7-like	protein-coding	0.040000	0.527363	
mm_127505.1	chr15	101447710	101447910	+	1	NA	NA	NA	65	NM_025487	66322	Mm.158111	NM_025487	ENSMUSG00000063971	Krt88	1700011A15Rik	keratin 88	protein-coding	0.010000	0.547264	
mm_102358.1	chr11	58323050	58323250	-	1	NA	NA	NA	-37	NM_001256518	319475	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	0.115000	0.746269	
mm_126687.1	chr15	84923303	84923503	+	1	NA	NA	NA	-25	NM_016714	18141	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0.105000	0.641791	
mm_39958.1	chr5	32136382	32136582	+	1	NA	NA	NA	10	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.125000	0.691542	-41(CTTTTTAGAGGG,+,0.00)
mm_114832.1	chr13	92355144	92355344	+	1	NA	NA	NA	-241	NM_010829	17686	Mm.343101	NM_010829	ENSMUSG00000014850	Msh3	D13Em1|Rep-3|Rep3	mutS homolog 3	protein-coding	0.070000	0.582090	
mm_164646.1	chr17	35267392	35267592	-	1	NA	NA	NA	4369	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.000000	0.432836	
mm_80951.1	chr9	102988649	102988849	+	1	NA	NA	NA	-19740	NM_033314	24059	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	0.025000	0.567164	
mm_12653.1	chr2	74825772	74825972	+	1	NA	NA	NA	60	NM_016804	53375	Mm.292613	NM_016804	ENSMUSG00000027099	Mtx2	1500012G02Rik	metaxin 2	protein-coding	0.160000	0.746269	
mm_127945.1	chr15	10714642	10714842	-	1	NA	NA	NA	-94	NR_045063	75259	Mm.33928	NR_045063	ENSMUSG00000097058	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	0.095000	0.741294	
mm_9264.1	chr1	171632065	171632265	-	1	NA	NA	NA	9735	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.442786	-100(GTCCTTTAAAGC,-,0.00),-99(TCCTTTAAAGCA,+,0.00),-98(CCTTTAAAGCAG,+,0.00)
mm_167148.1	chr7	129447274	129447474	+	1	NA	NA	NA	-144489	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.000000	0.452736	
mm_171799.1	chr5	123628097	123628297	+	1	NA	NA	NA	-55182	NM_029929	77573	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0.020000	0.412935	
mm_68381.1	chr7	109175235	109175435	-	1	NA	NA	NA	-128	NM_001302205	109594	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0.075000	0.631841	
mm_108465.1	chr12	83525956	83526156	+	1	NA	NA	NA	7	NM_001165256	73828	Mm.38238	NM_030246	ENSMUSG00000021222	Dcaf4	1110018E21Rik|Wdr21	DDB1 and CUL4 associated factor 4	protein-coding	0.030000	0.562189	
mm_22812.1	chr3	27183687	27183887	+	1	NA	NA	NA	783	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.035000	0.542289	
mm_95223.1	chr11	44414006	44414206	+	1	NA	NA	NA	14043	NM_001303244	16160	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.010000	0.427861	
mm_1942.1	chr1	86303342	86303542	+	1	NA	NA	NA	221	NM_145222	227327	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.085000	0.696517	
mm_109406.1	chr12	110447070	110447270	+	1	NA	NA	NA	-9	NM_001135001	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.175000	0.850746	
mm_115226.1	chr13	109837699	109837899	+	1	NA	NA	NA	-66010	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.020000	0.502488	
mm_31341.1	chr4	46472473	46472673	+	1	NA	NA	NA	-16756	NM_053179	94181	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.005000	0.288557	
mm_20290.1	chr2	126931804	126932004	-	1	NA	NA	NA	1331	NM_023220	66552	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	0.010000	0.393035	-62(GGCTTGAAAAGG,-,0.00)
mm_80479.1	chr9	78204199	78204399	+	1	NA	NA	NA	12333	NM_010357	14860	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	0.020000	0.482587	
mm_86598.1	chr10	13304870	13305070	+	1	NA	NA	NA	19190	NM_001195096	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.010000	0.417910	
mm_105241.1	chr11	102319314	102319514	-	1	NA	NA	NA	-318	NM_011551	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.115000	0.711443	
mm_130649.1	chr15	100636619	100636819	-	1	NA	NA	NA	221	NR_104338	207818	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.170000	0.786070	
mm_24263.1	chr3	89187725	89187925	+	1	NA	NA	NA	4600	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.020000	0.502488	
mm_33209.1	chr4	126556865	126557065	+	1	NA	NA	NA	-15	NM_175554	269582	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	0.090000	0.621891	
mm_154545.1	chrM	14676	14876	-	1	NA	NA	NA	NA	NA									0.025000	0.383085	
mm_129172.1	chr15	76249422	76249622	-	1	NA	NA	NA	1331	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.015000	0.567164	
mm_1805.1	chr1	80758052	80758252	+	1	NA	NA	NA	401	NM_175291	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.060000	0.606965	
mm_86970.1	chr10	25377486	25377686	+	1	NA	NA	NA	17788	NM_001199265	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.020000	0.532338	-40(GCTTTAAGACCC,+,0.00)
mm_110551.1	chr12	55490347	55490547	-	1	NA	NA	NA	2200	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.035000	0.587065	
mm_124694.1	chr15	6438854	6439054	+	1	NA	NA	NA	-6379	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.015000	0.383085	
mm_90111.1	chr10	117277297	117277497	+	1	NA	NA	NA	4875	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.010000	0.402985	
mm_11968.1	chr2	53605048	53605248	+	1	NA	NA	NA	413064	NM_022989	65103	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	0.000000	0.393035	
mm_23482.1	chr3	60496135	60496335	+	1	NA	NA	NA	-4944	NM_001253711	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.393035	
mm_38887.1	chr4	149737966	149738166	-	1	NA	NA	NA	2	NM_001284270	230917	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	0.170000	0.771144	
mm_156557.1	chrX	151801083	151801283	+	1	NA	NA	NA	-2099	NM_021523	59026	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	0.050000	0.656716	
mm_19017.1	chr2	76907956	76908156	-	1	NA	NA	NA	74491	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.030000	0.487562	
mm_151104.1	chr19	47860643	47860843	+	1	NA	NA	NA	-4802	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.025000	0.502488	
mm_48568.1	chr5	143314968	143315168	-	1	NA	NA	NA	292	NM_172726	231868	Mm.440105	NM_172726	ENSMUSG00000039244	E130309D02Rik	A630028N22	RIKEN cDNA E130309D02 gene	protein-coding	0.120000	0.701493	
mm_12602.1	chr2	74679575	74679775	+	1	NA	NA	NA	117	NR_073086	15431	Mm.207763	NM_008273	ENSMUSG00000042499	Hoxd11	E230017H14Rik|Hox-4.6|Hox-5.4|Hox-5.5	homeobox D11	protein-coding	0.070000	0.542289	
mm_12368.1	chr2	69821734	69821934	+	1	NA	NA	NA	-536	NM_177784	277396	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	0.015000	0.482587	
mm_156059.1	chrX	109154251	109154451	+	1	NA	NA	NA	-42405	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.010000	0.388060	0(GCCTTTTTAGGC,-,0.00)
mm_9996.1	chr1	191396934	191397134	-	1	NA	NA	NA	7	NM_144880	226849	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0.120000	0.726368	
mm_9854.1	chr1	184734924	184735124	-	1	NA	NA	NA	-2531	NM_008250	15284	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.025000	0.537313	
mm_125355.1	chr15	39391776	39391976	+	1	NA	NA	NA	193590	NM_053271	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.025000	0.452736	-95(TTTTTAATAGGC,+,0.00)
mm_97835.1	chr11	83064881	83065081	+	1	NA	NA	NA	-131	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.010000	0.502488	-71(GACTCTAAAGGC,-,0.00)
mm_108170.1	chr12	76404291	76404491	+	1	NA	NA	NA	21	NM_008301	15512	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0.085000	0.651741	
mm_158798.1	chrX	167243994	167244194	-	1	NA	NA	NA	20235	NM_001313761	170744	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	0.020000	0.432836	
mm_111581.1	chr12	101818994	101819194	-	1	NA	NA	NA	25	NM_011812	23876	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	0.080000	0.681592	
mm_165143.1	chr2	18672135	18672335	+	1	NA	NA	NA	-227	NM_147778	12238	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0.150000	0.766169	
mm_156336.1	chrX	139009556	139009756	+	1	NA	NA	NA	75580	NM_177920	331535	Mm.211704	NM_177920	ENSMUSG00000031271	Serpina7	C730040N12Rik|Tbg	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7	protein-coding	0.005000	0.373134	
mm_125835.1	chr15	74958214	74958414	+	1	NA	NA	NA	3208	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.020000	0.502488	
mm_89364.1	chr10	88459563	88459763	+	1	NA	NA	NA	76	NM_011517	20962	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	0.060000	0.606965	
mm_35526.1	chr4	41275203	41275403	-	1	NA	NA	NA	-168	NM_026872	68926	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0.075000	0.552239	-33(GCTTTAATAGTG,+,0.00)
mm_68411.1	chr7	109637402	109637602	-	1	NA	NA	NA	-20355	NM_029811	76954	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.010000	0.532338	
mm_107510.1	chr12	40108323	40108523	+	1	NA	NA	NA	25805	NM_009132	20259	Mm.2416	NM_009132	ENSMUSG00000002565	Scin	AW545522|adseverin	scinderin	protein-coding	0.010000	0.452736	
mm_135730.1	chr16	55831134	55831334	-	1	NA	NA	NA	7407	NM_030612	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.010000	0.482587	
mm_133413.1	chr16	85132330	85132530	+	1	NA	NA	NA	41277	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.010000	0.442786	
mm_131855.1	chr16	23069186	23069386	+	1	NA	NA	NA	10986	NM_001102412	16644	Mm.2160	NM_023125	ENSMUSG00000022875	Kng1	Kng	kininogen 1	protein-coding	0.010000	0.427861	
mm_126912.1	chr15	90882952	90883152	+	1	NA	NA	NA	15424	NR_033583	20738	Mm.431547	NR_033583		Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.015000	0.417910	
mm_26280.1	chr3	142505538	142505738	+	1	NA	NA	NA	8704	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.015000	0.457711	
mm_63072.1	chr7	122163977	122164177	+	1	NA	NA	NA	4642	NM_011121	18817	Mm.16525	NM_011121	ENSMUSG00000030867	Plk1	Plk|STPK13	polo-like kinase 1	protein-coding	0.030000	0.572139	
mm_68231.1	chr7	104463553	104463753	-	1	NA	NA	NA	1540	NM_009099	20128	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.010000	0.383085	
mm_156228.1	chrX	135801090	135801290	+	1	NA	NA	NA	-37844	NM_001163016	245607	Mm.489763	NM_001163015	ENSMUSG00000072966	Gprasp2	5330440H13Rik|GASP-2|GASP2|Prpl5	G protein-coupled receptor associated sorting protein 2	protein-coding	0.000000	0.427861	
mm_61120.1	chr7	55131911	55132111	+	1	NA	NA	NA	296766	NM_178705	233271	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	0.000000	0.283582	
mm_51936.1	chr6	91690317	91690517	+	1	NA	NA	NA	6350	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.025000	0.562189	
mm_22099.1	chr2	169155615	169155815	-	1	NA	NA	NA	177446	NR_040326	75508	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.045000	0.532338	
mm_85647.1	chr9	107656530	107656730	-	1	NA	NA	NA	10769	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.030000	0.582090	
mm_59275.1	chr7	24904245	24904445	+	1	NA	NA	NA	-1	NM_001130152	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.115000	0.711443	
mm_1125.1	chr1	60180492	60180692	+	1	NA	NA	NA	-7	NM_173444	269198	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	0.120000	0.756219	
mm_99149.1	chr11	100553909	100554109	+	1	NA	NA	NA	8377	NM_028918	74407	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0.025000	0.572139	
mm_168155.1	chr10	42055314	42055514	-	1	NA	NA	NA	-37032	NM_001034858	213402	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.075000	0.592040	
mm_79556.1	chr9	58014898	58015098	+	1	NA	NA	NA	46	NM_019779	13070	Mm.302865	NM_019779	ENSMUSG00000032323	Cyp11a1	Cyp11a|Cypxia1|D9Ertd411e|P450scc|Scc|cscc	cytochrome P450, family 11, subfamily a, polypeptide 1	protein-coding	0.020000	0.582090	
mm_168576.1	chr1	171494399	171494599	+	1	NA	NA	NA	-8979	NM_019484	56009	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	0.050000	0.497512	
mm_77262.1	chr8	115707489	115707689	-	1	NA	NA	NA	-695	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.045000	0.497512	
mm_94709.1	chr11	20453007	20453207	+	1	NA	NA	NA	-90146	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.000000	0.492537	
mm_24134.1	chr3	88218144	88218344	+	1	NA	NA	NA	2646	NR_029817	387133		NR_029817	ENSMUSG00000106493	Mir9-1	Mirn9|Mirn9-1|mir-9-1|mmu-mir-9-1	microRNA 9-1	ncRNA	0.005000	0.442786	
mm_119815.1	chr14	54223940	54224140	+	1	NA	NA	NA	29889	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.368159	
mm_7932.1	chr1	133911402	133911602	-	1	NA	NA	NA	-3503	NM_001160420	269120	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	0.005000	0.527363	
mm_2123.1	chr1	87901127	87901327	+	1	NA	NA	NA	-46928	NR_136921	100503175	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.015000	0.527363	-42(CCTTTTCTGGTC,+,0.00)
mm_137619.1	chr17	28280187	28280387	+	1	NA	NA	NA	-6665	NR_039557	100628577		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.020000	0.616915	
mm_46181.1	chr5	97111511	97111711	-	1	NA	NA	NA	-15	NM_198422	231474	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.130000	0.736318	
mm_107947.1	chr12	72212190	72212390	+	1	NA	NA	NA	23456	NR_104446	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.030000	0.452736	
mm_49921.1	chr6	39205419	39205619	+	1	NA	NA	NA	1254	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.105000	0.616915	
mm_137697.1	chr17	29040897	29041097	+	1	NA	NA	NA	8337	NR_036613	20383	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0.000000	0.368159	
mm_16628.1	chr2	5697790	5697990	-	1	NA	NA	NA	16872	NM_001290374	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.005000	0.507463	
mm_16763.1	chr2	9877901	9878101	-	1	NA	NA	NA	599	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.040000	0.532338	
mm_60122.1	chr7	36696552	36696752	+	1	NA	NA	NA	-1466	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.135000	0.736318	
mm_107529.1	chr12	40504084	40504284	+	1	NA	NA	NA	58131	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.005000	0.383085	
mm_103134.1	chr11	70237671	70237871	-	1	NA	NA	NA	143	NM_001177601	104457	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	0.120000	0.751244	
mm_145815.1	chr18	65430859	65431059	+	1	NA	NA	NA	-38	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.085000	0.701493	
mm_117893.1	chr13	99422820	99423020	-	1	NA	NA	NA	-10094	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.527363	10(GCTTTACAAGGG,+,0.00)
mm_89033.1	chr10	82764170	82764370	+	1	NA	NA	NA	-129	NM_010914	18045	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	0.120000	0.706468	
mm_78618.1	chr9	37555551	37555751	+	1	NA	NA	NA	-2906	NM_022029	64011	Mm.335065	NM_022029	ENSMUSG00000053310	Nrgn	0710001B06Rik|AI838505|NG|NG/RC3|Pss1|R75334|RC3	neurogranin	protein-coding	0.005000	0.507463	
mm_24126.1	chr3	88206431	88206631	+	1	NA	NA	NA	-8640	NR_037276	100526540		NR_037276	ENSMUSG00000092988	Mir3093	mir-3093|mmu-mir-3093	microRNA 3093	ncRNA	0.015000	0.522388	
mm_164138.1	chr15	53194058	53194258	+	1	NA	NA	NA	152025	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.000000	0.348259	
mm_29422.1	chr3	108976598	108976798	-	1	NA	NA	NA	36141	NM_001078646	66715	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0.010000	0.432836	-60(CTGTCTAAAAGA,-,0.00)
mm_36701.1	chr4	96664114	96664314	-	1	NA	NA	NA	-95	NM_010007	13109	Mm.12838	NM_010007	ENSMUSG00000052520	Cyp2j5	-	cytochrome P450, family 2, subfamily j, polypeptide 5	protein-coding	0.010000	0.427861	
mm_2387.1	chr1	93501475	93501675	+	1	NA	NA	NA	-10529	NM_145519	227377	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	0.015000	0.462687	
mm_129092.1	chr15	75921398	75921598	-	1	NA	NA	NA	62	NM_025412	66194	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik	pyrroline-5-carboxylate reductase-like	protein-coding	0.100000	0.696517	
mm_116176.1	chr13	30820564	30820764	-	1	NA	NA	NA	71431	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.020000	0.492537	
mm_171774.1	chr5	109751635	109751835	-	1	NA	NA	NA	82407	NR_027964	667213	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213|ENSMUSG00000072761	zinc finger protein pseudogene	pseudo	0.040000	0.532338	
mm_169057.1	chr13	23324543	23324743	-	1	NA	NA	NA	11118	NR_131052	75887	Mm.416957	NR_131052	ENSMUSG00000087097	4930586N03Rik	-	RIKEN cDNA 4930586N03 gene	ncRNA	0.020000	0.482587	
mm_134618.1	chr16	21063082	21063282	-	1	NA	NA	NA	90762	NM_025634	66561	Mm.422867	NM_025634	ENSMUSG00000090356	Teddm3	2310042E22Rik	transmembrane epididymal family member 3	protein-coding	0.005000	0.502488	
mm_149640.1	chr19	17399515	17399715	+	1	NA	NA	NA	5572	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.015000	0.378109	
mm_170819.1	chr2	176520875	176521075	+	1	NA	NA	NA	-29	NM_001177405	667962	Mm.422667	NM_001177405	ENSMUSG00000089756	Zfp966	Gm8898|OTTMUSG00000016203	zinc finger protein 966	protein-coding	0.015000	0.492537	
mm_57561.1	chr6	127109443	127109643	-	1	NA	NA	NA	9	NM_177003	319801	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	0.090000	0.621891	
mm_142597.1	chr17	46763600	46763800	-	1	NA	NA	NA	12	NM_011195	19208	Mm.215173	NM_011195	ENSMUSG00000036858	Ptcra	gp33|pT-alpha|pT-alpha-TCR|pT[a]|pTa|pTalpha	pre T cell antigen receptor alpha	protein-coding	0.005000	0.621891	
mm_18636.1	chr2	69382940	69383140	-	1	NA	NA	NA	2578	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.025000	0.472637	
mm_106603.1	chr11	120747902	120748102	-	1	NA	NA	NA	-15981	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.010000	0.452736	-61(CACCCTTAAAGC,-,0.00),-33(TGCTATAAAAGT,-,0.00)
mm_70480.1	chr8	12395576	12395776	+	1	NA	NA	NA	157	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.100000	0.726368	
mm_162667.1	chr10	7063036	7063236	-	1	NA	NA	NA	-39951	NM_001033391	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.010000	0.452736	
mm_18266.1	chr2	52319143	52319343	-	1	NA	NA	NA	19555	NM_010889	17996	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	0.005000	0.522388	53(CACTTTAAGAGC,-,0.00)
mm_22235.1	chr2	174438850	174439050	-	1	NA	NA	NA	89	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.105000	0.701493	
mm_84966.1	chr9	83806173	83806373	-	1	NA	NA	NA	32	NM_148941	83603	Mm.83949	NM_148941	ENSMUSG00000032262	Elovl4	-	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	protein-coding	0.145000	0.756219	
mm_156579.1	chrX	152026258	152026458	+	1	NA	NA	NA	9930	NM_019710	24061	Mm.482095	NM_019710	ENSMUSG00000041133	Smc1a	5830426I24Rik|SMC-1A|Sb1.8|Smc1|Smc1alpha|Smc1l1|Smcb|mKIAA0178	structural maintenance of chromosomes 1A	protein-coding	0.020000	0.452736	
mm_119865.1	chr14	54476120	54476320	+	1	NA	NA	NA	120	NM_080726	140743	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	0.050000	0.597015	-32(GTATTTAAAGGG,+,0.00),-32(GTATTTAAAGGG,-,0.00)
mm_11753.1	chr2	38473030	38473230	+	1	NA	NA	NA	-38567	NM_021606	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.000000	0.472637	
mm_81128.1	chr9	106484387	106484587	+	1	NA	NA	NA	7178	NM_145620	27966	Mm.239997	NM_145620	ENSMUSG00000041506	Rrp9	55kDa|D19435|D9Wsu10e|Rnu3ip2|U3-55k	RRP9, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0.015000	0.547264	
mm_1150.1	chr1	60771515	60771715	+	1	NA	NA	NA	25227	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.000000	0.333333	
mm_45047.1	chr5	41707892	41708092	-	1	NA	NA	NA	187	NR_132325	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.085000	0.706468	
mm_158260.1	chrX	109013258	109013458	-	1	NA	NA	NA	22	NM_016710	50887	Mm.298443	NM_016710	ENSMUSG00000031245	Hmgn5	GARP45|NBP-45|Nsbp1	high-mobility group nucleosome binding domain 5	protein-coding	0.060000	0.502488	
mm_110019.1	chr12	16740130	16740330	-	1	NA	NA	NA	17009	NM_001252071	268527	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	0.010000	0.582090	
mm_29366.1	chr3	108704368	108704568	-	1	NA	NA	NA	17831	NM_029522	76123	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0.020000	0.552239	
mm_122054.1	chr14	30216907	30217107	-	1	NA	NA	NA	136479	NM_001302637	12289	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.010000	0.383085	
mm_8462.1	chr1	153262376	153262576	-	1	NA	NA	NA	70310	NM_010683	226519	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	0.040000	0.572139	25(CCTTTTCAACCC,+,0.00)
mm_165632.1	chr3	68824793	68824993	-	1	NA	NA	NA	-44693	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.005000	0.447761	-74(GCTTTTATGGCC,+,0.00)
mm_25210.1	chr3	103832751	103832951	+	1	NA	NA	NA	155	NM_001142960	229672	Mm.297245	NM_001142959	ENSMUSG00000044165	Bcl2l15	Bfk|Gm566	BCLl2-like 15	protein-coding	0.025000	0.462687	
mm_131721.1	chr16	21558542	21558742	+	1	NA	NA	NA	135524	NM_001285894	209018	Mm.235683	NM_145948	ENSMUSG00000033653	Vps8	AI315068|AU040738|mKIAA0804	VPS8 CORVET complex subunit	protein-coding	0.010000	0.482587	
mm_17911.1	chr2	35336910	35337110	-	1	NA	NA	NA	-1	NM_013515	13830	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.065000	0.621891	
mm_49627.1	chr6	30804205	30804405	+	1	NA	NA	NA	63006	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.010000	0.427861	
mm_128647.1	chr15	59542102	59542302	-	1	NA	NA	NA	-106452	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.010000	0.522388	
mm_54284.1	chr6	29216218	29216418	-	1	NA	NA	NA	46	NM_001302933	23917	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine 5'-phosphate dehydrogenase 1	protein-coding	0.080000	0.696517	
mm_31405.1	chr4	48047258	48047458	+	1	NA	NA	NA	2053	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.065000	0.582090	
mm_109094.1	chr12	104856982	104857182	+	1	NA	NA	NA	7994	NR_104436	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.040000	0.611940	
mm_116611.1	chr13	48870820	48871020	-	1	NA	NA	NA	-35	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.220000	0.900498	
mm_48114.1	chr5	137116160	137116360	-	1	NA	NA	NA	-53	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.050000	0.601990	
mm_160571.1	chr9	57147756	57147956	-	1	NA	NA	NA	-822	NM_028347	72774	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0.045000	0.547264	
mm_78550.1	chr9	35421562	35421762	+	1	NA	NA	NA	-30414	NM_021339	57810	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	0.155000	0.805970	
mm_164567.1	chr17	19987953	19988153	+	1	NA	NA	NA	60152	NM_001104566	22313	Mm.379039	NM_001104566	ENSMUSG00000090315	Vmn2r104	V2r7	vomeronasal 2, receptor 104	protein-coding	0.000000	0.308458	-48(CCATATAAAAGA,-,0.00)
mm_12041.1	chr2	58769913	58770113	+	1	NA	NA	NA	14829	NM_029692	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.000000	0.417910	21(CACCATATATGC,-,0.00),23(CCATATATGCAC,+,0.00),50(CCATATATACCA,+,0.00),78(CCATATATACCA,+,0.00)
mm_10954.1	chr2	25656552	25656752	+	1	NA	NA	NA	-1300	NM_007947	13863	Mm.12867	NM_007947	ENSMUSG00000026937	Lcn5	E-RABP|Erabp|MEP10	lipocalin 5	protein-coding	0.010000	0.422886	
mm_118772.1	chr14	22742641	22742841	+	1	NA	NA	NA	-199943	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.000000	0.333333	
mm_145512.1	chr18	60442955	60443155	+	1	NA	NA	NA	58928	NM_134133	106878	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.015000	0.358209	-89(CTCCTTAAAGAG,-,0.00),-87(CCTTAAAGAGGC,+,0.00)
mm_153988.1	chr19	48127292	48127492	-	1	NA	NA	NA	-78633	NM_025696	66673	Mm.70980	NM_025696	ENSMUSG00000063434	Sorcs3	6330404A12Rik|AW045579	sortilin-related VPS10 domain containing receptor 3	protein-coding	0.010000	0.417910	
mm_107005.1	chr12	11297084	11297284	+	1	NA	NA	NA	-2703	NR_106136	102465775		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.015000	0.338308	63(CTTCTTAAAAGG,-,0.00)
mm_85134.1	chr9	95753780	95753980	-	1	NA	NA	NA	-3522	NM_011643	22063	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0.000000	0.238806	
mm_40589.1	chr5	64220813	64221013	+	1	NA	NA	NA	-9444	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.010000	0.477612	
mm_46713.1	chr5	110387074	110387274	-	1	NA	NA	NA	-47	NM_028596	381668	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.105000	0.741294	
mm_97886.1	chr11	83291867	83292067	+	1	NA	NA	NA	268	NR_028363	613254	Mm.383758	NR_028363	ENSMUSG00000093483	AA465934	-	expressed sequence AA465934	ncRNA	0.020000	0.427861	
mm_154597.1	chrX	7593131	7593331	+	1	NA	NA	NA	12189	NM_138603	54638	Mm.288192	NM_138603	ENSMUSG00000031143	Ccdc22	AI481216|DXImx40e|Ppp1r3f|Sfc22	coiled-coil domain containing 22	protein-coding	0.010000	0.542289	
mm_38588.1	chr4	141821663	141821863	-	1	NA	NA	NA	4242	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.025000	0.567164	
mm_98086.1	chr11	86587100	86587300	+	1	NA	NA	NA	-3042	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.452736	
mm_106714.1	chr12	3834701	3834901	+	1	NA	NA	NA	27443	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.010000	0.587065	68(GGCTCTTAGAGG,-,0.00)
mm_103336.1	chr11	74637992	74638192	-	1	NA	NA	NA	-11403	NM_001081158	74148	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.140000	0.746269	
mm_131292.1	chr16	11397002	11397202	+	1	NA	NA	NA	-8546	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.000000	0.507463	
mm_49091.1	chr6	7554960	7555160	+	1	NA	NA	NA	-11	NM_009311	21333	Mm.1440	NM_009311	ENSMUSG00000061762	Tac1	4930528L02Rik|NK-1|NK1|Nkna|PPT-A|PPTA|SP	tachykinin 1	protein-coding	0.085000	0.606965	
mm_86817.1	chr10	20907238	20907438	+	1	NA	NA	NA	-45209	NM_026203	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.020000	0.432836	
mm_82383.1	chr9	14662813	14663013	-	1	NA	NA	NA	-47913	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.025000	0.447761	-89(CTCTTTTTAAAC,-,0.00),-87(CTTTTTAAACTC,+,0.00),-54(ACCTTTTAAAAC,-,0.00),-53(CCTTTTAAAACT,+,0.00)
mm_67435.1	chr7	80385490	80385690	-	1	NA	NA	NA	2356	NM_010194	14159	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.020000	0.527363	
mm_44360.1	chr5	17797033	17797233	-	1	NA	NA	NA	38763	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.020000	0.417910	-19(GACCTTAAAGGA,-,0.00)
mm_112873.1	chr13	20853747	20853947	+	1	NA	NA	NA	59734	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.353234	
mm_44723.1	chr5	30960233	30960433	-	1	NA	NA	NA	-6	NM_016703	50907	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0.130000	0.671642	
mm_121470.1	chr14	120911088	120911288	+	1	NA	NA	NA	-6	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	0.140000	0.781095	
mm_124920.1	chr15	12117777	12117977	+	1	NA	NA	NA	26	NM_011767	22763	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.070000	0.631841	
mm_76633.1	chr8	92158179	92158379	-	1	NA	NA	NA	197841	NR_110452	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	0.015000	0.512438	
mm_115872.1	chr13	21716082	21716282	-	1	NA	NA	NA	-39	NM_178199	319185		NM_178199	ENSMUSG00000094338	Hist1h2bl	H2b-291a	histone cluster 1, H2bl	protein-coding	0.040000	0.462687	
mm_60407.1	chr7	44475913	44476113	+	1	NA	NA	NA	5666	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.502488	
mm_148562.1	chr19	4756370	4756570	+	1	NA	NA	NA	-55	NM_025717	66704	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	0.120000	0.736318	
mm_34079.1	chr4	138648462	138648662	+	1	NA	NA	NA	-24570	NM_029401	75718	Mm.251530	NM_029401	ENSMUSG00000028753	Vwa5b1	4931403E03Rik	von Willebrand factor A domain containing 5B1	protein-coding	0.015000	0.557214	
mm_60583.1	chr7	44482594	44482794	+	1	NA	NA	NA	-1823	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.572139	76(CCCTTTCTGGGC,+,0.00)
mm_26308.1	chr3	142512093	142512293	+	1	NA	NA	NA	15259	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.000000	0.318408	
mm_34630.1	chr4	150573416	150573616	+	1	NA	NA	NA	78658	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.030000	0.432836	
mm_17470.1	chr2	28559521	28559721	-	1	NA	NA	NA	3782	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.015000	0.587065	
mm_85443.1	chr9	104213782	104213982	-	1	NA	NA	NA	49048	NM_001163026	235567	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.025000	0.462687	
mm_21747.1	chr2	164804785	164804985	-	1	NA	NA	NA	-4	NM_133240	170789	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	0.070000	0.572139	21(GCCTATATAAGT,-,0.00)
mm_162557.1	chr1	172082766	172082966	+	1	NA	NA	NA	-117	NM_021607	59287	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	0.095000	0.641791	
mm_35434.1	chr4	36936213	36936413	-	1	NA	NA	NA	15431	NM_001165999	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.005000	0.363184	
mm_32353.1	chr4	105157247	105157447	+	1	NA	NA	NA	0	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.045000	0.567164	-33(CGCTTTTTAAAG,-,0.00),-32(GCTTTTTAAAGG,-,0.00),-31(CTTTTTAAAGGC,+,0.00)
mm_84600.1	chr9	70038003	70038203	-	1	NA	NA	NA	-15	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.010000	0.492537	66(CTCTTTATAAGG,-,0.00),68(CTTTATAAGGGA,+,0.00)
mm_107504.1	chr12	39941483	39941683	+	1	NA	NA	NA	95793	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.045000	0.442786	-34(AGCTTTATAAAC,-,0.00)
mm_140480.1	chr17	3114423	3114623	-	1	NA	NA	NA	-449	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.105000	0.661692	
mm_87054.1	chr10	28827309	28827509	+	1	NA	NA	NA	96098	NR_033601	114676	Mm.390292	NR_033601		4930519F09Rik	-	pyruvate dehydrogenase E1 alpha 1 pseudogene	pseudo	0.010000	0.398010	
mm_163304.1	chr11	121354520	121354720	+	1	NA	NA	NA	-173	NM_025793	66840	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0.065000	0.666667	
mm_157710.1	chrX	64276870	64277070	-	1	NA	NA	NA	26	NM_178740	245446	Mm.101707	NM_178740	ENSMUSG00000046699	Slitrk4	6430513G13|D930039I09Rik	SLIT and NTRK-like family, member 4	protein-coding	0.115000	0.691542	
mm_67880.1	chr7	99345403	99345603	-	1	NA	NA	NA	7736	NM_009825	12406	Mm.22708	NM_009825	ENSMUSG00000070436	Serpinh1	BERF-1|Cbp1|Cbp2|Hsp47|J6|Serpinh2|gp46	serine (or cysteine) peptidase inhibitor, clade H, member 1	protein-coding	0.005000	0.343284	
mm_53285.1	chr6	128934280	128934480	+	1	NA	NA	NA	-1	NM_027562	70809	Mm.439891	NM_027562	ENSMUSG00000000248	Clec2g	4632413B12Rik|Clr-c|Clr-d|Clrc|Clrd|Clrx|Ddv10|Ocilrp1	C-type lectin domain family 2, member g	protein-coding	0.010000	0.467662	
mm_139600.1	chr17	57279009	57279209	+	1	NA	NA	NA	9	NM_001163815	22324	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.055000	0.676617	
mm_135362.1	chr16	44016252	44016452	-	1	NA	NA	NA	84	NM_153528	207798	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.030000	0.517413	
mm_16999.1	chr2	18392597	18392797	-	1	NA	NA	NA	133	NM_001190817	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.100000	0.716418	
mm_13112.1	chr2	91581057	91581257	+	1	NA	NA	NA	-14924	NR_028553	100217458		NR_028553	ENSMUSG00000077221	Snord67	MBII-166	small nucleolar RNA, C/D box 67	snoRNA	0.005000	0.432836	
mm_94550.1	chr11	11461991	11462191	+	1	NA	NA	NA	328	NM_015785	53604	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	0.135000	0.781095	
mm_89208.1	chr10	86698248	86698448	+	1	NA	NA	NA	7096	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.000000	0.442786	
mm_111347.1	chr12	86896796	86896996	-	1	NA	NA	NA	-12082	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.000000	0.412935	39(GAGCATTTAAGG,-,0.00),41(GCATTTAAGGAG,+,0.00)
mm_13742.1	chr2	118118657	118118857	+	1	NA	NA	NA	6881	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.020000	0.577114	
mm_62926.1	chr7	118600099	118600299	+	1	NA	NA	NA	2902	NM_001105252	74424	Mm.11068	NM_028930	ENSMUSG00000030650	Tmc5	4932443L08Rik|AU016085	transmembrane channel-like gene family 5	protein-coding	0.030000	0.497512	
mm_133216.1	chr16	75906926	75907126	+	1	NA	NA	NA	2240	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.005000	0.437811	
mm_114933.1	chr13	95845146	95845346	+	1	NA	NA	NA	46676	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.015000	0.477612	
mm_18360.1	chr2	58567123	58567323	-	1	NA	NA	NA	-111	NM_001289660	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.115000	0.716418	
mm_88056.1	chr10	67547849	67548049	+	1	NA	NA	NA	1006	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.035000	0.601990	
mm_158630.1	chrX	153037465	153037665	-	1	NA	NA	NA	-2	NM_023788	75625	Mm.6890	NM_023788	ENSMUSG00000047238	Mageh1	2010107K23Rik|APR-1|APR1	melanoma antigen, family H, 1	protein-coding	0.070000	0.616915	
mm_152257.1	chr19	8774351	8774551	-	1	NA	NA	NA	16	NR_028419	67706	Mm.45155	NM_026325	ENSMUSG00000003680	Tmem179b	0610031L02Rik|1500003K22Rik|1810059G22Rik	transmembrane protein 179B	protein-coding	0.085000	0.646766	
mm_77006.1	chr8	107439489	107439689	-	1	NA	NA	NA	3191	NM_025830	66894	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.035000	0.437811	
mm_3693.1	chr1	153752693	153752893	+	1	NA	NA	NA	3367	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.030000	0.457711	
mm_94643.1	chr11	16915163	16915363	+	1	NA	NA	NA	36019	NR_110421	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.005000	0.432836	
mm_166823.1	chr7	18065914	18066114	+	1	NA	NA	NA	85	NM_001162523	67315	Mm.46089	NM_026087	ENSMUSG00000030366	Ceacam12	1600031J20Rik|Ceacam12-C1|Ceacam12-C3|Ceacam12C1|Ceacam12C3	carcinoembryonic antigen-related cell adhesion molecule 12	protein-coding	0.005000	0.492537	
mm_53464.1	chr6	134920321	134920521	+	1	NA	NA	NA	20	NM_009875	12576	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	0.060000	0.582090	-36(GTTTAAATAGAC,+,0.00)
mm_160102.1	chr7	19077892	19078092	+	1	NA	NA	NA	1792	NM_010058	13401	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0.045000	0.587065	
mm_112003.1	chr12	110840828	110841028	-	1	NA	NA	NA	11	NM_011973	26448	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0.085000	0.606965	-79(GTTTTTAAACCC,+,0.00)
mm_165453.1	chr2	157562349	157562549	-	1	NA	NA	NA	2371	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.010000	0.467662	
mm_62303.1	chr7	100176587	100176787	+	1	NA	NA	NA	17	NM_001190869	57442	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	0.010000	0.447761	
mm_37190.1	chr4	117489849	117490049	-	1	NA	NA	NA	7103	NM_025739	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.025000	0.547264	
mm_160429.1	chr8	88527288	88527488	+	1	NA	NA	NA	-245	NM_001163660	93960	Mm.30219	NM_027280	ENSMUSG00000031661	Nkd1	2810434J10Rik|9030215G15Rik|Nkd	naked cuticle 1 homolog (Drosophila)	protein-coding	0.030000	0.532338	-82(CTTTTTAAACCT,+,0.00)
mm_54590.1	chr6	38147344	38147544	-	1	NA	NA	NA	-22858	NM_080467	140494	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	0.015000	0.537313	
mm_126909.1	chr15	90224234	90224434	+	1	NA	NA	NA	23	NM_001033441	380959	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	0.120000	0.756219	
mm_11912.1	chr2	52038049	52038249	+	1	NA	NA	NA	36	NM_009398	21930	Mm.3509	NM_009398	ENSMUSG00000053475	Tnfaip6	TSG-6|Tnfip6|Tsg6	tumor necrosis factor alpha induced protein 6	protein-coding	0.055000	0.512438	
mm_66103.1	chr7	31038980	31039180	-	1	NA	NA	NA	1237	NR_106017	102465635		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.000000	0.552239	
mm_162805.1	chr10	77788171	77788371	-	1	NA	NA	NA	10862	NM_001205034	100503388	Mm.482880	NM_001205034	ENSMUSG00000096380	Gm19668	-	predicted gene, 19668	protein-coding	0.005000	0.487562	
mm_32651.1	chr4	115065009	115065209	+	1	NA	NA	NA	7298	NM_001287388	21349	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.005000	0.452736	-30(GCCCATTAATGG,-,0.00)
mm_34532.1	chr4	149446056	149446256	+	1	NA	NA	NA	8812	NM_022020	63954	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	0.040000	0.562189	
mm_138954.1	chr17	44188479	44188679	+	1	NA	NA	NA	7	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	0.075000	0.651741	
mm_163522.1	chr12	115848252	115848452	-	1	NA	NA	NA	-152558	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.005000	0.447761	
mm_140151.1	chr17	80127362	80127562	+	1	NA	NA	NA	-9	NM_176963	319625	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.025000	0.407960	72(TTTTAAAAAGGC,+,0.00)
mm_108011.1	chr12	73584949	73585149	+	1	NA	NA	NA	253	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.080000	0.726368	
mm_4108.1	chr1	167598363	167598563	+	1	NA	NA	NA	101	NM_009107	20183	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0.085000	0.641791	
mm_153132.1	chr19	34241595	34241795	-	1	NA	NA	NA	13678	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.045000	0.542289	
mm_14930.1	chr2	151542391	151542591	+	1	NA	NA	NA	8	NM_001302078	14225	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.125000	0.701493	
mm_21786.1	chr2	164855641	164855841	-	1	NA	NA	NA	1967	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.010000	0.457711	
mm_42648.1	chr5	118649496	118649696	+	1	NA	NA	NA	88877	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.005000	0.353234	
mm_37171.1	chr4	117182470	117182670	-	1	NA	NA	NA	54	NM_134471	73804	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.070000	0.532338	
mm_11233.1	chr2	29802744	29802944	+	1	NA	NA	NA	164	NM_011989	26569	Mm.330113	NM_011989	ENSMUSG00000059316	Slc27a4	BB144259|FATP4	solute carrier family 27 (fatty acid transporter), member 4	protein-coding	0.120000	0.766169	
mm_23542.1	chr3	61363942	61364142	+	1	NA	NA	NA	-465	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.045000	0.597015	
mm_108884.1	chr12	99965705	99965905	+	1	NA	NA	NA	1306	NM_001164427	217826	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.125000	0.706468	
mm_107756.1	chr12	59071379	59071579	+	1	NA	NA	NA	4560	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.030000	0.383085	
mm_81117.1	chr9	106460535	106460735	+	1	NA	NA	NA	5305	NM_001159652	436090	Mm.482905	NM_001159652	ENSMUSG00000091735	Gpr62	4933402E03Rik	G protein-coupled receptor 62	protein-coding	0.040000	0.621891	
mm_59033.1	chr7	19307244	19307444	+	1	NA	NA	NA	2701	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.040000	0.621891	
mm_113847.1	chr13	47201505	47201705	+	1	NA	NA	NA	7602	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.020000	0.507463	
mm_20259.1	chr2	126606078	126606278	-	1	NA	NA	NA	12500	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.015000	0.537313	
mm_165623.1	chr3	63905231	63905431	+	1	NA	NA	NA	24054	NM_177856	329659	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding	0.045000	0.522388	
mm_37339.1	chr4	119657527	119657727	-	1	NA	NA	NA	1318	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.005000	0.567164	
mm_133178.1	chr16	72563290	72563490	+	1	NA	NA	NA	-99759	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.015000	0.512438	
mm_82180.1	chr9	123872213	123872413	+	1	NA	NA	NA	-10284	NM_011798	23832	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0.010000	0.457711	
mm_67087.1	chr7	68283754	68283954	-	1	NA	NA	NA	-7260	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.020000	0.482587	
mm_21412.1	chr2	158120103	158120303	-	1	NA	NA	NA	26189	NM_009373	21817	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.040000	0.542289	
mm_114802.1	chr13	91098399	91098599	+	1	NA	NA	NA	125488	NM_025770	66795	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.000000	0.442786	
mm_146101.1	chr18	73949252	73949452	+	1	NA	NA	NA	-68555	NR_045390	77855	Mm.410760	NR_045390	ENSMUSG00000090263	D730045A05Rik	-	RIKEN cDNA D730045A05 gene	ncRNA	0.005000	0.467662	-30(TGGTATATAGGG,-,0.00)
mm_119123.1	chr14	31131018	31131218	+	1	NA	NA	NA	-2188	NM_001308464	66487	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0.135000	0.786070	
mm_153474.1	chr19	41273630	41273830	-	1	NA	NA	NA	-9726	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.010000	0.492537	
mm_14149.1	chr2	126552924	126553124	+	1	NA	NA	NA	0	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0.135000	0.786070	
mm_9384.1	chr1	172213052	172213252	-	1	NA	NA	NA	-6348	NM_011063	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.010000	0.502488	
mm_168273.1	chr10	98550984	98551184	-	1	NA	NA	NA	-199217	NR_045179	667438	Mm.414522	NR_045179		Gm8633	EG667438	predicted gene 8633	ncRNA	0.025000	0.427861	
mm_49901.1	chr6	38941280	38941480	+	1	NA	NA	NA	22394	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.005000	0.482587	-13(CTCCATAAATAG,-,0.00),-11(CCATAAATAGAC,+,0.00)
mm_71782.1	chr8	66511658	66511858	+	1	NA	NA	NA	18	NM_028927	74419	Mm.159193	NM_028927	ENSMUSG00000025519	Tktl2	4933401I19Rik	transketolase-like 2	protein-coding	0.075000	0.616915	
mm_43861.1	chr5	143464565	143464765	+	1	NA	NA	NA	172	NM_144915	231871	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.115000	0.686567	
mm_744.1	chr1	43532130	43532330	+	1	NA	NA	NA	86479	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.015000	0.462687	
mm_96774.1	chr11	69935813	69936013	+	1	NA	NA	NA	14	NM_016875	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.145000	0.805970	
mm_136011.1	chr16	75909139	75909339	-	1	NA	NA	NA	27	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.010000	0.502488	
mm_33385.1	chr4	129600593	129600793	+	1	NA	NA	NA	-14	NM_029748	76799	Mm.293096	NM_029748	ENSMUSG00000028797	Tmem234	1500002D11Rik|2510006D16Rik|4933407D05Rik	transmembrane protein 234	protein-coding	0.090000	0.671642	
mm_164498.1	chr16	91522559	91522759	-	1	NA	NA	NA	-24435	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.025000	0.532338	
mm_74486.1	chr8	4678247	4678447	-	1	NA	NA	NA	65177	NM_145591	233987	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.065000	0.582090	
mm_74244.1	chr8	124793403	124793603	+	1	NA	NA	NA	484	NM_198632	330863	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	0.080000	0.676617	
mm_32660.1	chr4	115090069	115090269	+	1	NA	NA	NA	1461	NM_001164557	67182	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	0.005000	0.502488	
mm_116607.1	chr13	48819607	48819807	-	1	NA	NA	NA	51178	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.015000	0.592040	
mm_51468.1	chr6	82952640	82952840	+	1	NA	NA	NA	5818	NM_033079	110958	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	0.010000	0.472637	
mm_55086.1	chr6	49215269	49215469	-	1	NA	NA	NA	-415	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.095000	0.616915	
mm_30992.1	chr4	37970283	37970483	+	1	NA	NA	NA	-1018639	NM_001165999	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.005000	0.467662	
mm_55254.1	chr6	52909538	52909738	-	1	NA	NA	NA	-18	NM_001168277	231986	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.000000	0.522388	
mm_118644.1	chr14	21500831	21501031	+	1	NA	NA	NA	1146	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.095000	0.631841	
mm_93324.1	chr10	99232511	99232711	-	1	NA	NA	NA	-30620	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.010000	0.447761	
mm_96854.1	chr11	70054270	70054470	+	1	NA	NA	NA	15	NM_001291132	11889	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.020000	0.582090	
mm_32525.1	chr4	108861514	108861714	+	1	NA	NA	NA	13757	NM_029571	100087	Mm.440007	NM_029571	ENSMUSG00000073775	Kti12	1110001A12Rik|AI326810|AU014758	KTI12 homolog, chromatin associated	protein-coding	0.010000	0.497512	
mm_142173.1	chr17	36252395	36252595	-	1	NA	NA	NA	5351	NM_026308	67676	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0.055000	0.562189	
mm_96041.1	chr11	59556432	59556632	+	1	NA	NA	NA	13846	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.000000	0.383085	
mm_71492.1	chr8	46752554	46752754	+	1	NA	NA	NA	12909	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.000000	0.507463	
mm_169067.1	chr1	32702297	32702497	+	1	NA	NA	NA	-155104	NM_001164286	408191	Mm.479439	NM_001164286	ENSMUSG00000091318	Gm5415	EG408191|Senp14	predicted gene 5415	protein-coding	0.015000	0.477612	
mm_5029.1	chr1	193301857	193302057	+	1	NA	NA	NA	-37	NM_008484	16780	Mm.435441	NM_008484	ENSMUSG00000026639	Lamb3	-	laminin, beta 3	protein-coding	0.010000	0.597015	
mm_129996.1	chr15	86185800	86186000	-	1	NA	NA	NA	241	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.040000	0.651741	
mm_55413.1	chr6	65022648	65022848	-	1	NA	NA	NA	-19919	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.010000	0.442786	
mm_105269.1	chr11	102403189	102403389	-	1	NA	NA	NA	1698	NR_105895	102465561		NR_105895	ENSMUSG00000098774	Mir6930	Gm27436|mmu-mir-6930	microRNA 6930	ncRNA	0.020000	0.557214	
mm_157375.1	chrX	37878494	37878694	-	1	NA	NA	NA	350	NM_001004193	434768	Mm.336025	NM_001004193	ENSMUSG00000064137	Rhox8	Tox	reproductive homeobox 8	protein-coding	0.020000	0.532338	
mm_21763.1	chr2	164840285	164840485	-	1	NA	NA	NA	6612	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.025000	0.601990	
mm_26725.1	chr3	159872986	159873186	+	1	NA	NA	NA	33391	NM_026582	68151	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|Gpr177	wntless homolog (Drosophila)	protein-coding	0.015000	0.447761	
mm_37677.1	chr4	129189340	129189540	-	1	NA	NA	NA	42	NM_029036	74648	Mm.172064	NM_029036	ENSMUSG00000040928	S100pbp	4930429A08Rik|AI851343|S100pbpr	S100P binding protein	protein-coding	0.105000	0.706468	
mm_71798.1	chr8	67956671	67956871	+	1	NA	NA	NA	17803	NM_177698	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.010000	0.422886	
mm_157667.1	chrX	58631207	58631407	-	1	NA	NA	NA	-280154	NM_023774	75352	Mm.60906	NM_023774	ENSMUSG00000046180	4930550L24Rik	mage-k1	RIKEN cDNA 4930550L24 gene	protein-coding	0.015000	0.467662	
mm_131588.1	chr16	18548633	18548833	+	1	NA	NA	NA	38236	NM_011532	21380	Mm.295194	NM_011532	ENSMUSG00000009097	Tbx1	-	T-box 1	protein-coding	0.010000	0.497512	
mm_88860.1	chr10	80930786	80930986	+	1	NA	NA	NA	795	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.050000	0.597015	-2(TCTTATATACAC,+,0.00)
mm_102471.1	chr11	60031733	60031933	-	1	NA	NA	NA	5172	NM_008819	18618	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	0.015000	0.567164	
mm_120962.1	chr14	77663174	77663374	+	1	NA	NA	NA	135694	NM_001033440	380920	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	0.020000	0.447761	
mm_161084.1	chr12	85106330	85106530	-	1	NA	NA	NA	1	NM_175198	73422	Mm.311944	NM_175198	ENSMUSG00000042320	Prox2	1700058C01Rik	prospero homeobox 2	protein-coding	0.025000	0.567164	
mm_148667.1	chr19	5637381	5637581	+	1	NA	NA	NA	-9	NM_009045	19697	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.110000	0.686567	-33(TCCCCTAAAAAC,-,0.00)
mm_141254.1	chr17	27580514	27580714	-	1	NA	NA	NA	-14887	NM_001002895	106672	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251	expressed sequence AI413582	protein-coding	0.035000	0.646766	
mm_121398.1	chr14	119137793	119137993	+	1	NA	NA	NA	-372	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.135000	0.761194	
mm_8389.1	chr1	151345002	151345202	-	1	NA	NA	NA	604	NM_001039511	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.115000	0.701493	
mm_24304.1	chr3	89392092	89392292	+	1	NA	NA	NA	328	NR_040403	545539	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	ENSMUSG00000074466|OTTMUSG00000021274	predicted gene 15417	ncRNA	0.070000	0.686567	
mm_25478.1	chr3	108939992	108940192	+	1	NA	NA	NA	8	NM_025723	66715	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0.110000	0.686567	
mm_57454.1	chr6	125165503	125165703	-	1	NA	NA	NA	170	NM_008084	14433	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0.070000	0.641791	
mm_49779.1	chr6	34920872	34921072	+	1	NA	NA	NA	12	NM_009292	20899	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0.050000	0.542289	72(TGGCCTTAAAGG,-,0.00)
mm_83859.1	chr9	54661591	54661791	-	1	NA	NA	NA	194	NM_053178	94180	Mm.20592	NM_053178	ENSMUSG00000032281	Acsbg1	BG1|Bgm|E230019G03Rik|GR-LACS|Lpd|R75185	acyl-CoA synthetase bubblegum family member 1	protein-coding	0.040000	0.636816	
mm_74335.1	chr8	127064008	127064208	+	1	NA	NA	NA	52	NM_001309391	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.155000	0.786070	
mm_80453.1	chr9	77982584	77982784	+	1	NA	NA	NA	65319	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.040000	0.542289	
mm_22162.1	chr2	172940301	172940501	-	1	NA	NA	NA	-80	NM_007557	12162	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	0.080000	0.661692	
mm_29250.1	chr3	107218650	107218850	-	1	NA	NA	NA	2982	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.025000	0.537313	
mm_4850.1	chr1	187215454	187215654	+	1	NA	NA	NA	43	NM_026367	67769	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding	0.105000	0.646766	
mm_148990.1	chr19	8617925	8618125	+	1	NA	NA	NA	29	NM_008766	18399	Mm.30090	NM_008766	ENSMUSG00000024650	Slc22a6	NKT|Oat1|Orctl1|mOat1	solute carrier family 22 (organic anion transporter), member 6	protein-coding	0.020000	0.532338	
mm_47636.1	chr5	125304381	125304581	-	1	NA	NA	NA	36613	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.030000	0.572139	
mm_51096.1	chr6	67270341	67270541	+	1	NA	NA	NA	3462	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.000000	0.358209	
mm_56334.1	chr6	92673370	92673570	-	1	NA	NA	NA	32714	NM_001081146	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.010000	0.383085	
mm_161591.1	chr16	34784696	34784896	+	1	NA	NA	NA	-154	NM_139300	107589	Mm.33360	NM_139300	ENSMUSG00000022836	Mylk	9530072E15Rik|A930019C19Rik|AW489456|KRP|MLCK108|MLCK210|Mlck|nmMlck|smMLCK	myosin, light polypeptide kinase	protein-coding	0.015000	0.532338	
mm_117949.1	chr13	99435354	99435554	-	1	NA	NA	NA	-22628	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.035000	0.542289	
mm_69919.1	chr7	141744616	141744816	-	1	NA	NA	NA	-44295	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.015000	0.517413	
mm_60228.1	chr7	43607105	43607305	+	1	NA	NA	NA	36	NM_028913	74400	Mm.159188	NM_028913	ENSMUSG00000055102	Zfp819	4930427I11Rik|4933405K07Rik	zinc finger protein 819	protein-coding	0.075000	0.572139	
mm_128292.1	chr15	37233072	37233272	-	1	NA	NA	NA	136	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	0.105000	0.696517	
mm_83831.1	chr9	54183207	54183407	-	1	NA	NA	NA	10135	NM_007810	13075	Mm.5199	NM_007810	ENSMUSG00000032274	Cyp19a1	Ar|ArKO|Cyp19|Int-5|Int5|p450arom	cytochrome P450, family 19, subfamily a, polypeptide 1	protein-coding	0.000000	0.422886	
mm_67049.1	chr7	67316736	67316936	-	1	NA	NA	NA	56022	NM_001291192	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.020000	0.333333	
mm_162669.1	chr10	7131858	7132058	+	1	NA	NA	NA	80279	NM_172546	215748	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.010000	0.537313	74(GCCTTTATAGCT,+,0.00)
mm_32144.1	chr4	99656234	99656434	+	1	NA	NA	NA	35	NM_010425	15221	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	0.120000	0.691542	
mm_6044.1	chr1	59763211	59763411	-	1	NA	NA	NA	-968	NM_007561	12168	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0.120000	0.751244	
mm_96094.1	chr11	60417170	60417370	+	1	NA	NA	NA	125	NM_025757	66771	Mm.29950	NM_025757	ENSMUSG00000018415	Gid4	4933439F18Rik	GID complex subunit 4, VID24 homolog	protein-coding	0.115000	0.626866	
mm_31666.1	chr4	59964178	59964378	+	1	NA	NA	NA	-3613	NM_008648	17843	Mm.457982	NM_008648	ENSMUSG00000041333	Mup4	Mup-4|Mup1	major urinary protein 4	protein-coding	0.010000	0.457711	
mm_116244.1	chr13	33935612	33935812	-	1	NA	NA	NA	-320	NR_040707	68808	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0.085000	0.681592	
mm_66531.1	chr7	45136082	45136282	-	1	NA	NA	NA	250	NM_013520	14256	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	0.055000	0.646766	
mm_33892.1	chr4	136181054	136181254	+	1	NA	NA	NA	372	NM_001305399	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.020000	0.577114	
mm_65103.1	chr7	19303532	19303732	-	1	NA	NA	NA	6413	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.025000	0.532338	
mm_151809.1	chr19	5457439	5457639	-	1	NA	NA	NA	24	NM_198616	240514	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	0.075000	0.696517	
mm_29464.1	chr3	113574696	113574896	-	1	NA	NA	NA	-34	NM_007446	11722	Mm.439727	NM_007446	ENSMUSG00000074264	Amy1	Amy-1|Amy1a|C030014B17Rik	amylase 1, salivary	protein-coding	0.000000	0.437811	
mm_8628.1	chr1	156280280	156280480	-	1	NA	NA	NA	22968	NM_001134741	214575	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	0.015000	0.527363	
mm_4364.1	chr1	172082207	172082407	+	1	NA	NA	NA	-222	NM_009938	12847	Mm.30041	NM_009938	ENSMUSG00000026553	Copa	AU040324|xenin	coatomer protein complex subunit alpha	protein-coding	0.040000	0.487562	
mm_90322.1	chr10	127066997	127067197	+	1	NA	NA	NA	3164	NM_025982	67125	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	0.025000	0.527363	
mm_149120.1	chr19	8988943	8989143	+	1	NA	NA	NA	-241	NR_104460	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.035000	0.557214	
mm_81879.1	chr9	119339555	119339755	+	1	NA	NA	NA	385	NM_010851	17874	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	0.055000	0.547264	
mm_128651.1	chr15	59648055	59648255	-	1	NA	NA	NA	-499	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.105000	0.676617	
mm_69839.1	chr7	141327555	141327755	-	1	NA	NA	NA	70	NM_016874	54006	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	deformed epidermal autoregulatory factor 1 (Drosophila)	protein-coding	0.145000	0.736318	
mm_94552.1	chr11	11463938	11464138	+	1	NA	NA	NA	294	NM_001347068	73862	Mm.159077	NM_028669	ENSMUSG00000020191	4930415F15Rik	-	RIKEN cDNA 4930415F15 gene	protein-coding	0.005000	0.293532	
mm_52428.1	chr6	113483324	113483524	+	1	NA	NA	NA	-145	NM_133930	171508	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811	cysteine-rich with EGF-like domains 1	protein-coding	0.040000	0.547264	
mm_114985.1	chr13	97482653	97482853	+	1	NA	NA	NA	52	NR_110431	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.010000	0.482587	
mm_67092.1	chr7	68749147	68749347	-	1	NA	NA	NA	-9	NM_025549	66412	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.060000	0.631841	
mm_57997.1	chr6	136172987	136173187	-	1	NA	NA	NA	424	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.035000	0.572139	
mm_19109.1	chr2	79454981	79455181	-	1	NA	NA	NA	1555	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.020000	0.497512	
mm_22734.1	chr3	19691921	19692121	+	1	NA	NA	NA	3375	NM_205769	12918	Mm.290689	NM_205769	ENSMUSG00000049796	Crh	CRF|Gm1347	corticotropin releasing hormone	protein-coding	0.010000	0.462687	
mm_67945.1	chr7	100467037	100467237	-	1	NA	NA	NA	-5854	NM_009464	22229	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.020000	0.587065	
mm_164516.1	chr16	96280734	96280934	+	1	NA	NA	NA	-198	NM_033149	93961	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	0.075000	0.671642	
mm_171490.1	chr4	146148047	146148247	+	1	NA	NA	NA	-8680	NM_001177546	667666	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164|OTTMUSG00000010694	zinc finger protein 600	protein-coding	0.040000	0.512438	-30(GTGTATATAAGC,-,0.00)
mm_167996.1	chrX	170017069	170017269	+	1	NA	NA	NA	-38252	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.422886	
mm_122369.1	chr14	39471090	39471290	-	1	NA	NA	NA	-1239	NR_131973	432842	Mm.352566	NR_131973		LOC432842	-	uncharacterized LOC432842	ncRNA	0.010000	0.502488	
mm_139282.1	chr17	48264191	48264391	+	1	NA	NA	NA	-4	NM_172623	224840	Mm.131234	NM_172623	ENSMUSG00000051682	Treml4	5031403H21Rik|BB137214|IDCP1|TLT-4|TLT4|Treml3	triggering receptor expressed on myeloid cells-like 4	protein-coding	0.005000	0.517413	-81(CCTCTTATGGGT,+,0.00)
mm_111376.1	chr12	87266114	87266314	-	1	NA	NA	NA	72	NM_001142580	104799	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	0.035000	0.567164	
mm_59541.1	chr7	27838486	27838686	+	1	NA	NA	NA	2	NM_011762	22717	Mm.379046	NM_011762	ENSMUSG00000078779	Zfp59	Mfg-2|Mfg2	zinc finger protein 59	protein-coding	0.075000	0.616915	-69(CCCTTTAAGCGC,+,0.00)
mm_166580.1	chr6	52284932	52285132	+	1	NA	NA	NA	22257	NR_110442	791364	Mm.97466	NR_110441	ENSMUSG00000055408	Hottip	ENSMUSG00000055408|Gm15053|OTTMUSG00000018874	Hoxa distal transcript antisense RNA	ncRNA	0.025000	0.437811	
mm_35978.1	chr4	53631953	53632153	-	1	NA	NA	NA	582	NM_001195284	319636	Mm.103464	NM_176966	ENSMUSG00000054752	Fsd1l	A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl|OTTMUSG00000007002	fibronectin type III and SPRY domain containing 1-like	protein-coding	0.045000	0.542289	
mm_79277.1	chr9	50775203	50775403	+	1	NA	NA	NA	78	NR_045601	102580	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	0.100000	0.572139	
mm_14055.1	chr2	122572053	122572253	+	1	NA	NA	NA	39124	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.000000	0.482587	-33(GCTTATATAAGC,+,0.00),-33(GCTTATATAAGC,-,0.00)
mm_139339.1	chr17	49454876	49455076	+	1	NA	NA	NA	26612	NM_020042	56738	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.005000	0.497512	
mm_129685.1	chr15	81408191	81408391	-	1	NA	NA	NA	-18	NM_021317	57755	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	0.000000	0.457711	
mm_128722.1	chr15	64059684	64059884	-	1	NA	NA	NA	664	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.035000	0.442786	
mm_26468.1	chr3	144569886	144570086	+	1	NA	NA	NA	230	NM_011828	23908	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.155000	0.820896	
mm_544.1	chr1	38017976	38018176	+	1	NA	NA	NA	20066	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.020000	0.512438	
mm_171470.1	chr4	145781398	145781598	+	1	NA	NA	NA	-45	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.040000	0.502488	
mm_73746.1	chr8	114439587	114439787	+	1	NA	NA	NA	35	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.100000	0.666667	
mm_100445.1	chr11	119491282	119491482	+	1	NA	NA	NA	35	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.105000	0.661692	
mm_128971.1	chr15	74832230	74832430	-	1	NA	NA	NA	9313	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.005000	0.383085	
mm_12982.1	chr2	90783173	90783373	+	1	NA	NA	NA	529	NM_178755	271813	Mm.61146	NM_178755	ENSMUSG00000040812	Agbl2	4930524K04|A430081C19Rik|CCP2	ATP/GTP binding protein-like 2	protein-coding	0.060000	0.601990	-21(CCTTTTCTGCGG,+,0.00)
mm_85212.1	chr9	96854469	96854669	-	1	NA	NA	NA	34905	NM_001289646	235534	Mm.233031	NM_153420	ENSMUSG00000043587	Pxylp1	9430094M07Rik|Acpl2|BB177120|C130099A20Rik	2-phosphoxylose phosphatase 1	protein-coding	0.025000	0.472637	
mm_106548.1	chr11	120581117	120581317	-	1	NA	NA	NA	403	NM_133796	192662	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.155000	0.756219	
mm_88678.1	chr10	80053089	80053289	+	1	NA	NA	NA	-299	NM_008162	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.020000	0.512438	-34(TGCTATATAAAC,-,0.00),50(GGCTCTTTAAGG,-,0.00),52(CTCTTTAAGGGG,+,0.00)
mm_68760.1	chr7	121589737	121589937	-	1	NA	NA	NA	-1	NR_102286	75793	Mm.23397	NR_102286		4933432K03Rik	1700001C18Rik|4930433G11Rik|AI428127	RIKEN cDNA 4933432K03 gene	ncRNA	0.020000	0.472637	
mm_95949.1	chr11	58390096	58390296	+	1	NA	NA	NA	9550	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.025000	0.497512	
mm_151878.1	chr19	5798364	5798564	-	1	NA	NA	NA	-2483	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.000000	0.278607	
mm_12299.1	chr2	69092983	69093183	+	1	NA	NA	NA	-42717	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.010000	0.427861	
mm_98762.1	chr11	96574772	96574972	+	1	NA	NA	NA	110281	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.015000	0.383085	
mm_121796.1	chr14	20083083	20083283	-	1	NA	NA	NA	-11	NM_026209	67509	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0.100000	0.661692	
mm_25103.1	chr3	101286577	101286777	+	1	NA	NA	NA	1262	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.020000	0.542289	
mm_7353.1	chr1	106608421	106608621	-	1	NA	NA	NA	-61890	NR_106164	102466254		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.000000	0.417910	
mm_100136.1	chr11	115974856	115975056	+	1	NA	NA	NA	231	NM_133663	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.125000	0.756219	
mm_14322.1	chr2	129365855	129366055	+	1	NA	NA	NA	-3947	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.020000	0.522388	
mm_43087.1	chr5	124450278	124450478	+	1	NA	NA	NA	3674	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.015000	0.547264	
mm_38233.1	chr4	136053279	136053479	-	1	NA	NA	NA	-8	NM_025919	67025	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	0.065000	0.616915	
mm_16362.1	chr2	174598611	174598811	+	1	NA	NA	NA	-44823	NM_001099328	100043757	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	ENSMUSG00000050600|OTTMUSG00000017459	zinc finger protein 831	protein-coding	0.060000	0.651741	
mm_63636.1	chr7	128523632	128523832	+	1	NA	NA	NA	149	NM_013863	29810	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0.065000	0.601990	
mm_154560.1	chrX	4899271	4899471	+	1	NA	NA	NA	-52764	NM_001243024	100042275	Mm.427352	NM_001243024	ENSMUSG00000094860	Btbd35f27	Gm3763	BTB domain containing 35, family member 27	protein-coding	0.035000	0.507463	
mm_168938.1	chr12	69361381	69361581	-	1	NA	NA	NA	-4305	NM_025441	66244	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0.100000	0.661692	
mm_58040.1	chr6	136825927	136826127	-	1	NA	NA	NA	2189	NM_021714	60321	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	0.020000	0.398010	
mm_35529.1	chr4	41312828	41313028	-	1	NA	NA	NA	1973	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.010000	0.363184	
mm_33827.1	chr4	135545136	135545336	+	1	NA	NA	NA	28384	NM_001013756	230824	Mm.331972	NM_001013756	ENSMUSG00000037188	Grhl3	AI561912|Get1|Som|Tfcp2l4|ct	grainyhead-like 3 (Drosophila)	protein-coding	0.020000	0.606965	
mm_36976.1	chr4	109531105	109531305	-	1	NA	NA	NA	-1	NM_001199090	67646	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	0.000000	0.393035	-72(GCTTTTATGGCA,+,0.00)
mm_155181.1	chrX	53724796	53724996	+	1	NA	NA	NA	65	NM_029142	75013	Mm.336332	NM_029142	ENSMUSG00000055555	4930502E18Rik	Ct55	RIKEN cDNA 4930502E18 gene	protein-coding	0.035000	0.522388	
mm_167852.1	chrX	9465643	9465843	+	1	NA	NA	NA	3581	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.020000	0.542289	
mm_140595.1	chr17	10282795	10282995	-	1	NA	NA	NA	36466	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.020000	0.378109	
mm_80407.1	chr9	77636623	77636823	+	1	NA	NA	NA	-9	NM_172925	244923	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0.025000	0.582090	
mm_78311.1	chr9	23222617	23222817	+	1	NA	NA	NA	-359	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.055000	0.592040	-31(GCTTTAAGGGAG,+,0.00)
mm_30752.1	chr4	14930560	14930760	+	1	NA	NA	NA	19	NM_001243100	100038514	Mm.331495	NM_001243100		Gm11837	OTTMUSG00000004551	predicted gene 11837	protein-coding	0.195000	0.835821	
mm_70088.1	chr7	142655674	142655874	-	1	NA	NA	NA	-778	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.040000	0.567164	
mm_46733.1	chr5	110780498	110780698	-	1	NA	NA	NA	-2	NM_001025561	56361	Mm.23528	NM_019700	ENSMUSG00000029507	Pus1	A730013B20Rik|MPUS1|mPus1p	pseudouridine synthase 1	protein-coding	0.120000	0.686567	
mm_74582.1	chr8	11279575	11279775	-	1	NA	NA	NA	-33130	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.045000	0.592040	
mm_38383.1	chr4	138770779	138770979	-	1	NA	NA	NA	-4856	NM_001347230	18782	Mm.71913	NM_011109	ENSMUSG00000041202	Pla2g2d	Splash|mGIID	phospholipase A2, group IID	protein-coding	0.020000	0.552239	
mm_118735.1	chr14	22308124	22308324	+	1	NA	NA	NA	234574	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.020000	0.333333	
mm_76132.1	chr8	80880390	80880590	-	1	NA	NA	NA	-11	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.065000	0.666667	
mm_154317.1	chrM	2057	2257	+	1	NA	NA	NA	NA	NA									0.020000	0.348259	
mm_119352.1	chr14	41114118	41114318	+	1	NA	NA	NA	9185	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.005000	0.477612	
mm_148481.1	chr19	4125915	4126115	+	1	NA	NA	NA	55	NM_025889	66990	Mm.276255	NM_025889		Tmem134	2410001H17Rik|AI463452	transmembrane protein 134	protein-coding	0.110000	0.746269	
mm_155815.1	chrX	100524173	100524373	+	1	NA	NA	NA	-565	NM_001114084	668257	Mm.95646	NM_001114084	ENSMUSG00000067597	Dgat2l6	9930021F22Rik	diacylglycerol O-acyltransferase 2-like 6	protein-coding	0.010000	0.462687	
mm_49780.1	chr6	35133784	35133984	+	1	NA	NA	NA	-147	NM_016877	53621	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0.080000	0.611940	
mm_78606.1	chr9	37544856	37545056	+	1	NA	NA	NA	5701	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.080000	0.537313	
mm_120969.1	chr14	77915063	77915263	+	1	NA	NA	NA	10924	NM_029495	108670	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.010000	0.338308	
mm_140879.1	chr17	23828906	23829106	-	1	NA	NA	NA	103	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.140000	0.751244	
mm_167767.1	chr9	110763632	110763832	+	1	NA	NA	NA	51	NM_010859	17897	Mm.7353	NM_010859	ENSMUSG00000059741	Myl3	MLC1s|MLC1v|Mylc|VLC1	myosin, light polypeptide 3	protein-coding	0.010000	0.552239	
mm_137950.1	chr17	32879030	32879230	+	1	NA	NA	NA	12473	NM_207245	240066	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0.025000	0.522388	
mm_69802.1	chr7	141183287	141183487	-	1	NA	NA	NA	-10536	NM_001172100	107702	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.005000	0.417910	
mm_119615.1	chr14	51114311	51114511	+	1	NA	NA	NA	-2142	NM_203508	219026	Mm.297297	NM_203508	ENSMUSG00000072575	Eddm3b	Fam12|Gm75	epididymal protein 3B	protein-coding	0.020000	0.502488	
mm_57996.1	chr6	136172822	136173022	-	1	NA	NA	NA	589	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.050000	0.517413	
mm_23731.1	chr3	69028428	69028628	+	1	NA	NA	NA	16214	NM_025863	66949	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.015000	0.393035	
mm_65368.1	chr7	25072412	25072612	-	1	NA	NA	NA	-143	NM_008168	14809	Mm.2879	NM_008168	ENSMUSG00000003378	Grik5	GluK5|GluRgamma2|KA2	glutamate receptor, ionotropic, kainate 5 (gamma 2)	protein-coding	0.030000	0.756219	
mm_140666.1	chr17	12915546	12915746	-	1	NA	NA	NA	445	NM_026310	67681	Mm.290166	NM_026310	ENSMUSG00000057388	Mrpl18	1010001C05Rik|C79879|HSPC071|MRP-L18	mitochondrial ribosomal protein L18	protein-coding	0.045000	0.557214	
mm_143302.1	chr17	65985765	65985965	-	1	NA	NA	NA	-34678	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.005000	0.417910	
mm_91671.1	chr10	43174502	43174702	-	1	NA	NA	NA	-72	NM_175407	109205	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis-binding protein homolog (Drosophila)	protein-coding	0.125000	0.781095	
mm_38052.1	chr4	134000781	134000981	-	1	NA	NA	NA	-17	NM_026144	67422	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	0.095000	0.646766	
mm_77919.1	chr9	7352281	7352481	+	1	NA	NA	NA	5007	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.437811	
mm_95119.1	chr11	34078075	34078275	+	1	NA	NA	NA	30974	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.005000	0.432836	
mm_63068.1	chr7	122132971	122133171	+	1	NA	NA	NA	30	NM_021608	59288	Mm.478285	NM_021608	ENSMUSG00000030868	Dctn5	4930427E12Rik|C78178|b2b315Clo	dynactin 5	protein-coding	0.060000	0.582090	
mm_55792.1	chr6	82726553	82726753	-	1	NA	NA	NA	47801	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.010000	0.338308	
mm_103341.1	chr11	74723745	74723945	-	1	NA	NA	NA	13	NR_037610	18472	Mm.397111	NM_013625	ENSMUSG00000020745	Pafah1b1	LIS-1|Lis1|MMS10-U|Mdsh|Ms10u|Pafaha	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	protein-coding	0.090000	0.726368	
mm_173082.1	chrX	142298185	142298385	+	1	NA	NA	NA	780	NR_002883	434858	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.015000	0.472637	
mm_145755.1	chr18	64887626	64887826	+	1	NA	NA	NA	-30	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.155000	0.830846	
mm_141008.1	chr17	24960577	24960777	-	1	NA	NA	NA	-54	NM_198937	52009	Mm.371601	NM_198937	ENSMUSG00000024165	Hn1l	2810430B18Rik|AL022629|C16orf34|D17Ertd441e	hematological and neurological expressed 1-like	protein-coding	0.110000	0.691542	
mm_49868.1	chr6	38558855	38559055	+	1	NA	NA	NA	3232	NM_001331223	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.005000	0.358209	
mm_136897.1	chr17	13014928	13015128	+	1	NA	NA	NA	7189	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.020000	0.383085	48(CAGTATAAAAAC,-,0.00)
mm_145691.1	chr18	61965509	61965709	+	1	NA	NA	NA	12534	NM_172628	225608	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	0.015000	0.422886	
mm_173340.1	chrY	90811759	90811959	+	1	NA	NA	NA	26417	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.005000	0.472637	
mm_1597.1	chr1	74375164	74375364	+	1	NA	NA	NA	61	NM_013612	18173	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.020000	0.587065	
mm_54849.1	chr6	42590751	42590951	-	1	NA	NA	NA	6521	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.000000	0.417910	
mm_58728.1	chr7	13029459	13029659	+	1	NA	NA	NA	5218	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.005000	0.522388	
mm_139849.1	chr17	69417297	69417497	+	1	NA	NA	NA	950	NR_026848	77533	Mm.266592	NR_026848		C030034I22Rik	-	RIKEN cDNA C030034I22 gene	ncRNA	0.105000	0.701493	
mm_108433.1	chr12	82246676	82246876	+	1	NA	NA	NA	-64573	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.005000	0.412935	
mm_14544.1	chr2	132846573	132846773	+	1	NA	NA	NA	7	NM_001024385	66586	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	0.090000	0.626866	
mm_120879.1	chr14	75284302	75284502	+	1	NA	NA	NA	29	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0.085000	0.621891	-32(GCTTTTAGATGC,+,0.00)
mm_99014.1	chr11	98863573	98863773	+	1	NA	NA	NA	75	NM_197940	68524	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0.085000	0.626866	
mm_123546.1	chr14	66831056	66831256	-	1	NA	NA	NA	37444	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.000000	0.407960	
mm_66484.1	chr7	45017186	45017386	-	1	NA	NA	NA	-721	NM_009101	20130	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.045000	0.537313	
mm_164024.1	chr14	75185786	75185986	-	1	NA	NA	NA	49461	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.000000	0.402985	
mm_115359.1	chr13	112801069	112801269	+	1	NA	NA	NA	392	NM_008247	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.100000	0.651741	
mm_30173.1	chr3	144202497	144202697	-	1	NA	NA	NA	-201	NM_001161769	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.080000	0.696517	
mm_42323.1	chr5	114899665	114899865	+	1	NA	NA	NA	2831	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.030000	0.492537	
mm_62762.1	chr7	112225743	112225943	+	1	NA	NA	NA	7	NM_001193305	320878	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0.120000	0.706468	
mm_67016.1	chr7	65635828	65636028	-	1	NA	NA	NA	-8970	NM_172310	272396	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0.020000	0.557214	
mm_103710.1	chr11	79518587	79518787	-	1	NA	NA	NA	5075	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.005000	0.378109	
mm_105280.1	chr11	102430130	102430330	-	1	NA	NA	NA	-92	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.025000	0.552239	-86(CCATTTCTAGGG,+,0.00)
mm_163945.1	chr14	51895247	51895447	-	1	NA	NA	NA	1737	NM_001039676	214922	Mm.281343	NM_001039676	ENSMUSG00000072572	Slc39a2	F730005G13Rik|Gm1789|Gm289|Zip2	solute carrier family 39 (zinc transporter), member 2	protein-coding	0.035000	0.562189	
mm_124390.1	chr14	110754970	110755170	-	1	NA	NA	NA	79	NM_175499	239250	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding	0.030000	0.467662	
mm_50618.1	chr6	50110141	50110341	+	1	NA	NA	NA	0	NM_019939	56524	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.200000	0.845771	
mm_59759.1	chr7	28829918	28830118	+	1	NA	NA	NA	-3776	NM_010706	16855	Mm.210336	NM_010706	ENSMUSG00000053964	Lgals4	gal-4	lectin, galactose binding, soluble 4	protein-coding	0.020000	0.567164	
mm_92819.1	chr10	81460666	81460866	-	1	NA	NA	NA	12365	NM_001311127	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.050000	0.641791	
mm_28751.1	chr3	95818801	95819001	-	1	NA	NA	NA	52	NM_001081293	75137	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	0.105000	0.731343	
mm_74597.1	chr8	11635543	11635743	-	1	NA	NA	NA	93	NR_106097	102465714		NR_106097	ENSMUSG00000104958	Mir7238	mmu-mir-7238	microRNA 7238	ncRNA	0.115000	0.676617	
mm_61289.1	chr7	67647331	67647531	+	1	NA	NA	NA	21	NM_025905	67009	Mm.249356	NM_025905	ENSMUSG00000030555	Ttc23	1600012K10Rik	tetratricopeptide repeat domain 23	protein-coding	0.010000	0.412935	
mm_164913.1	chr18	73754230	73754430	-	1	NA	NA	NA	149	NM_053255	114615	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	0.155000	0.800995	
mm_153923.1	chr19	47314676	47314876	-	1	NA	NA	NA	-41187	NR_105961	102466782		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.040000	0.592040	-56(TTCTATTTAAGG,-,0.00)
mm_49672.1	chr6	31398737	31398937	+	1	NA	NA	NA	9	NM_013791	27418	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0.105000	0.726368	-61(GCCCCTTTAAGA,-,0.00),-59(CCCTTTAAGAGC,+,0.00),-59(CCCTTTAAGAGC,-,0.00),-58(CCTTTAAGAGCA,+,0.00)
mm_166530.1	chr6	29694153	29694353	+	1	NA	NA	NA	39	NM_146173	232670	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	0.175000	0.800995	
mm_58119.1	chr6	139501793	139501993	-	1	NA	NA	NA	16	NM_001128090	632971	Mm.475610	NM_001128090	ENSMUSG00000092164	Rergl	EG632971	RERG/RAS-like	protein-coding	0.000000	0.432836	-67(AGCCATAAAAGG,-,0.00)
mm_39575.1	chr5	23434011	23434211	+	1	NA	NA	NA	242	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.030000	0.606965	
mm_12098.1	chr2	60972279	60972479	+	1	NA	NA	NA	2772	NR_045335	100038493	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	ENSMUSG00000075325|OTTMUSG00000012844	predicted gene 13582	ncRNA	0.015000	0.427861	
mm_94074.1	chr10	128409085	128409285	-	1	NA	NA	NA	611	NM_027257	69917	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	0.025000	0.542289	
mm_150247.1	chr19	34085532	34085732	+	1	NA	NA	NA	-15311	NM_023903	78753	Mm.195937	NM_023903	ENSMUSG00000056078	Lipm	4632427C23Rik|AW227514|Lipl3	lipase, family member M	protein-coding	0.000000	0.328358	
mm_123079.1	chr14	55739508	55739708	-	1	NA	NA	NA	6076	NM_026819	52585	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.035000	0.552239	
mm_44530.1	chr5	24445138	24445338	-	1	NA	NA	NA	-3	NM_023229	66587	Mm.28123	NM_023229	ENSMUSG00000028959	Fastk	0610011K02Rik|610011K02Rik	Fas-activated serine/threonine kinase	protein-coding	0.120000	0.731343	
mm_555.1	chr1	38019365	38019565	+	1	NA	NA	NA	21455	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.010000	0.537313	
mm_20480.1	chr2	129629958	129630158	-	1	NA	NA	NA	36889	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.020000	0.572139	
mm_155077.1	chrX	46328889	46329089	+	1	NA	NA	NA	-18	NM_028514	73360	Mm.60929	NM_028514	ENSMUSG00000046615	Actrt1	1700061J02Rik|Arp-T1	actin-related protein T1	protein-coding	0.000000	0.437811	
mm_154269.1	chr19	60772647	60772847	-	1	NA	NA	NA	1638	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.035000	0.437811	32(GCATTTAAAGAT,+,0.00)
mm_45343.1	chr5	65764941	65765141	-	1	NA	NA	NA	1520	NM_001024917	333789	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.045000	0.552239	
mm_73168.1	chr8	95020657	95020857	+	1	NA	NA	NA	3065	NM_173036	54672	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.020000	0.611940	
mm_83955.1	chr9	56928205	56928405	-	1	NA	NA	NA	66	NM_175483	235406	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	0.110000	0.711443	
mm_110373.1	chr12	40199466	40199666	-	1	NA	NA	NA	-251	NM_001033437	380755	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	0.015000	0.502488	
mm_113436.1	chr13	34875504	34875704	+	1	NA	NA	NA	110	NM_013830	19134	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	0.115000	0.656716	
mm_18028.1	chr2	38623816	38624016	-	1	NA	NA	NA	19990	NM_011187	19177	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0.015000	0.313433	
mm_109023.1	chr12	103640326	103640526	+	1	NA	NA	NA	-8982	NM_144834	217847	Mm.29094	NM_144834	ENSMUSG00000061947	Serpina10	PZI|ZPI	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 10	protein-coding	0.010000	0.497512	-34(TCCTATATAAGC,-,0.00)
mm_29227.1	chr3	107213317	107213517	-	1	NA	NA	NA	8315	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.527363	
mm_118716.1	chr14	22201832	22202032	+	1	NA	NA	NA	182220	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.010000	0.462687	-22(GGCTCTATATAG,-,0.00)
mm_158856.1	chrX	169997835	169998035	-	1	NA	NA	NA	-19018	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.090000	0.751244	
mm_56298.1	chr6	91692627	91692827	-	1	NA	NA	NA	8660	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.015000	0.527363	
mm_91985.1	chr10	61784242	61784442	-	1	NA	NA	NA	-478	NM_207000	404634	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	0.060000	0.487562	
mm_140024.1	chr17	73948313	73948513	+	1	NA	NA	NA	1783	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.005000	0.462687	
mm_31221.1	chr4	44012869	44013069	+	1	NA	NA	NA	319	NM_001290470	12757	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.130000	0.706468	
mm_124138.1	chr14	86857455	86857655	-	1	NA	NA	NA	283559	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding	0.010000	0.378109	18(GTGTTTTAAAGC,-,0.00)
mm_130631.1	chr15	100424071	100424271	-	1	NA	NA	NA	978	NR_040351	432982	Mm.234608	NM_001034883	ENSMUSG00000087444	Gm5475	EG432982	predicted gene 5475	ncRNA	0.020000	0.557214	-33(GCATATATAGAG,+,0.00)
mm_101423.1	chr11	29547775	29547975	-	1	NA	NA	NA	-75	NM_028504	73324	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	0.125000	0.666667	
mm_126458.1	chr15	80937035	80937235	+	1	NA	NA	NA	-2904	NR_039573	100628612		NR_039573	ENSMUSG00000092868	Mir5113	mir-5113|mmu-mir-5113|mu-mir-5113	microRNA 5113	ncRNA	0.005000	0.348259	
mm_133465.1	chr16	89183161	89183361	+	1	NA	NA	NA	-22600	NM_001163615	622935	Mm.459837	NM_001163615	ENSMUSG00000091039	Krtap20-2	1190004K03Rik|EG622935|Gm6371	keratin associated protein 20-2	protein-coding	0.005000	0.472637	-33(GTGTATAAAAGG,-,0.00)
mm_21959.1	chr2	167190049	167190249	-	1	NA	NA	NA	-1331	NM_008420	16500	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	0.180000	0.766169	
mm_63700.1	chr7	130645583	130645783	+	1	NA	NA	NA	-46873	NM_001347637	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.025000	0.432836	-72(CCTTTTAGACCC,+,0.00),-65(GACCCTAAAAGG,-,0.00)
mm_5419.1	chr1	33907732	33907932	-	1	NA	NA	NA	-65	NM_001310484	320705	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.200000	0.845771	
mm_156072.1	chrX	109161318	109161518	+	1	NA	NA	NA	-35338	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.010000	0.293532	
mm_60887.1	chr7	46396565	46396765	+	1	NA	NA	NA	197	NM_001112739	16502	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.145000	0.800995	
mm_42411.1	chr5	115147613	115147813	+	1	NA	NA	NA	10463	NM_175403	109154	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0.010000	0.532338	
mm_64382.1	chr7	142471987	142472187	+	1	NA	NA	NA	244	NM_019391	16985	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.000000	0.532338	
mm_95216.1	chr11	43697722	43697922	+	1	NA	NA	NA	15824	NM_001164231	70802	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	0.010000	0.333333	
mm_41129.1	chr5	87786578	87786778	+	1	NA	NA	NA	12228	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.005000	0.368159	
mm_130929.1	chr15	103102009	103102209	-	1	NA	NA	NA	44719	NR_045743	432989	Mm.383979	NR_045743	ENSMUSG00000097003	D930007P13Rik	-	Riken cDNA D930007P13 gene	ncRNA	0.050000	0.557214	
mm_79911.1	chr9	65461236	65461436	+	1	NA	NA	NA	399	NM_138584	27965	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	spastic paraplegia 21 homolog (human)	protein-coding	0.065000	0.577114	
mm_34233.1	chr4	141096987	141097187	+	1	NA	NA	NA	8742	NM_177867	329972	Mm.247201	NM_177867	ENSMUSG00000045004	Spata21	4933414G08	spermatogenesis associated 21	protein-coding	0.025000	0.621891	
mm_47762.1	chr5	131476583	131476783	-	1	NA	NA	NA	-169161	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.030000	0.666667	
mm_3502.1	chr1	150106921	150107121	+	1	NA	NA	NA	6990	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.025000	0.422886	
mm_130117.1	chr15	89477310	89477510	-	1	NA	NA	NA	14	NM_009713	11883	Mm.620	NM_009713	ENSMUSG00000022620	Arsa	AS-A|ASA|AW212749|As-2|As2|TISP73	arylsulfatase A	protein-coding	0.025000	0.547264	
mm_109864.1	chr12	4907404	4907604	-	1	NA	NA	NA	16	NM_145441	217379	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding	0.175000	0.791045	
mm_140943.1	chr17	24477517	24477717	-	1	NA	NA	NA	1461	NM_001252464	56716	Mm.289516	NM_019988	ENSMUSG00000024142	Mlst8	0610033N12Rik|AA409454|AI505104|AI851821|Gbl	MTOR associated protein, LST8 homolog (S. cerevisiae)	protein-coding	0.000000	0.457711	
mm_71854.1	chr8	68906093	68906293	+	1	NA	NA	NA	25638	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.010000	0.323383	
mm_127558.1	chr15	102151016	102151216	+	1	NA	NA	NA	541	NM_146064	223920	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	0.030000	0.522388	
mm_141493.1	chr17	31512125	31512325	-	1	NA	NA	NA	262	NM_021322	57773	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik	WD repeat domain 4	protein-coding	0.110000	0.721393	
mm_45415.1	chr5	66451558	66451758	-	1	NA	NA	NA	-113993	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.010000	0.572139	
mm_60100.1	chr7	35186289	35186489	+	1	NA	NA	NA	4	NM_017394	53896	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0.130000	0.776119	
mm_116960.1	chr13	56141426	56141626	-	1	NA	NA	NA	-5976	NM_001159513	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.005000	0.562189	
mm_148171.1	chr18	78057341	78057541	-	1	NA	NA	NA	-173	NM_001101038	620235	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0.030000	0.611940	
mm_150837.1	chr19	44918409	44918609	+	1	NA	NA	NA	-12610	NM_001081225	226151	Mm.212609	NM_172638	ENSMUSG00000036097	Fam178a	3632432H19|6030443O07Rik|AU014917|Slf2	family with sequence similarity 178, member A	protein-coding	0.030000	0.477612	
mm_98751.1	chr11	96545330	96545530	+	1	NA	NA	NA	80839	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.020000	0.398010	
mm_11058.1	chr2	27496877	27497077	+	1	NA	NA	NA	-18170	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.015000	0.492537	
mm_53447.1	chr6	134414401	134414601	+	1	NA	NA	NA	18172	NM_025778	66813	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.010000	0.527363	
mm_116588.1	chr13	47992299	47992499	-	1	NA	NA	NA	26209	NR_038004	70971	Mm.158514	NR_038004	ENSMUSG00000047324	4931429P17Rik	-	RIKEN cDNA 4931429P17 gene	ncRNA	0.015000	0.507463	
mm_87860.1	chr10	61175563	61175763	+	1	NA	NA	NA	401	NM_023064	65971	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.010000	0.587065	
mm_27644.1	chr3	63891238	63891438	-	1	NA	NA	NA	38047	NM_177856	329659	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding	0.000000	0.348259	
mm_121268.1	chr14	103346485	103346685	+	1	NA	NA	NA	215	NM_207215	105689	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.170000	0.766169	
mm_137479.1	chr17	26917002	26917202	+	1	NA	NA	NA	11	NM_053173	16580	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0.130000	0.666667	
mm_67620.1	chr7	84048049	84048249	-	1	NA	NA	NA	38356	NM_030728	80982	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	0.010000	0.393035	3(ATCTTTTTAAGC,-,0.00),5(CTTTTTAAGCCG,+,0.00)
mm_159950.1	chr6	85809775	85809975	-	1	NA	NA	NA	2	NM_001201389	100504710	Mm.486515	NM_001201389	ENSMUSG00000079495	Nat8f6	ENSMUSG00000079495|Gm11128	N-acetyltransferase 8 (GCN5-related) family member 6	protein-coding	0.000000	0.477612	
mm_48874.1	chr5	150665246	150665446	-	1	NA	NA	NA	266	NM_201369	381695	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|zag1	NEDD4 binding protein 2-like 2	protein-coding	0.065000	0.616915	
mm_27180.1	chr3	34620280	34620480	-	1	NA	NA	NA	-18084	NR_035433	100316679		NR_035433	ENSMUSG00000104797	Mir1897	Mirn1897|mmu-mir-1897	microRNA 1897	ncRNA	0.010000	0.502488	
mm_110323.1	chr12	34817397	34817597	-	1	NA	NA	NA	99598	NM_001271386	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.000000	0.388060	
mm_137649.1	chr17	28558172	28558372	+	1	NA	NA	NA	229	NR_105935	102465585		NR_105935	ENSMUSG00000099152	Mir6969	Gm27305|mmu-mir-6969	microRNA 6969	ncRNA	0.030000	0.527363	
mm_21582.1	chr2	164237170	164237370	-	1	NA	NA	NA	1071	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.005000	0.398010	
mm_19845.1	chr2	113640996	113641196	-	1	NA	NA	NA	-43994	NM_001287818	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.010000	0.412935	
mm_94184.1	chr10	128958711	128958911	-	1	NA	NA	NA	2177	NM_027853	71664	Mm.337232	NM_027853	ENSMUSG00000025347	Mettl7b	0610006F02Rik|AI266817	methyltransferase like 7B	protein-coding	0.020000	0.552239	
mm_51844.1	chr6	90320669	90320869	+	1	NA	NA	NA	4416	NM_027928	71797	Mm.49071	NM_027928	ENSMUSG00000056643	Chst13	1110067M19Rik|C4ST-3	carbohydrate (chondroitin 4) sulfotransferase 13	protein-coding	0.010000	0.567164	
mm_148583.1	chr19	5041277	5041477	+	1	NA	NA	NA	-27	NM_134155	107392	Mm.29628	NM_134155	ENSMUSG00000080268	Brms1	AV003220|AW554636	breast cancer metastasis-suppressor 1	protein-coding	0.095000	0.636816	
mm_31770.1	chr4	63547765	63547965	+	1	NA	NA	NA	3100	NM_024173	66290	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0.000000	0.378109	
mm_123846.1	chr14	70707903	70708103	-	1	NA	NA	NA	-54919	NM_181345	328440	Mm.347749	NM_181345	ENSMUSG00000047911	Npm2	-	nucleophosmin/nucleoplasmin 2	protein-coding	0.005000	0.442786	
mm_79805.1	chr9	64175501	64175701	+	1	NA	NA	NA	169	NR_028548	100217453		NR_028548	ENSMUSG00000094411	Snord16a	MBII-98	small nucleolar RNA, C/D box 16A	snoRNA	0.040000	0.437811	
mm_63277.1	chr7	126763683	126763883	+	1	NA	NA	NA	-2631	NM_024228	68616	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	0.030000	0.597015	
mm_107471.1	chr12	37569122	37569322	+	1	NA	NA	NA	-311483	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	0.010000	0.338308	
mm_75179.1	chr8	36952113	36952313	-	1	NA	NA	NA	229	NM_001194940	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.025000	0.517413	
mm_161200.1	chr13	58102211	58102411	-	1	NA	NA	NA	117	NM_001195075	100503085	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0.010000	0.497512	
mm_165764.1	chr3	121262835	121263035	-	1	NA	NA	NA	381	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0.160000	0.805970	-11(GCCCCTTTAAGG,-,0.00),-9(CCCTTTAAGGAG,+,0.00),-8(CCTTTAAGGAGC,+,0.00)
mm_77200.1	chr8	113839790	113839990	-	1	NA	NA	NA	8949	NM_172466	208936	Mm.167471	NM_172466	ENSMUSG00000053399	Adamts18	9630038L21|ADAMTS21|E130314N14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	protein-coding	0.005000	0.437811	
mm_151691.1	chr19	4333806	4334006	-	1	NA	NA	NA	-27684	NM_001290818	110355	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.050000	0.611940	
mm_135717.1	chr16	55816433	55816633	-	1	NA	NA	NA	5605	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.010000	0.407960	
mm_1010.1	chr1	58726109	58726309	+	1	NA	NA	NA	-4343	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.005000	0.427861	
mm_92219.1	chr10	68276353	68276553	-	1	NA	NA	NA	2273	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.045000	0.641791	
mm_127466.1	chr15	101272660	101272860	+	1	NA	NA	NA	5914	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.040000	0.537313	
mm_95442.1	chr11	50231964	50232164	+	1	NA	NA	NA	-181	NR_105884	102466765		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	0.015000	0.567164	
mm_50297.1	chr6	47480691	47480891	+	1	NA	NA	NA	26467	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.000000	0.293532	
mm_73803.1	chr8	117302374	117302574	+	1	NA	NA	NA	45455	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.010000	0.492537	
mm_52212.1	chr6	103510492	103510692	+	1	NA	NA	NA	-284	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.020000	0.507463	
mm_37009.1	chr4	112433886	112434086	-	1	NA	NA	NA	-1	NM_177864	329918	Mm.246783	NM_177864	ENSMUSG00000049972	Skint9	A030013N09Rik|Skint-9	selection and upkeep of intraepithelial T cells 9	protein-coding	0.000000	0.373134	
mm_22792.1	chr3	22210543	22210743	+	1	NA	NA	NA	-40727	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0.010000	0.417910	
mm_3915.1	chr1	162217564	162217764	+	1	NA	NA	NA	41	NR_002870	474332	Mm.479755	NR_002870	ENSMUSG00000078190	Dnm3os	6030416H16Rik|Hag2|Npn1|P/L01	dynamin 3, opposite strand	ncRNA	0.010000	0.547264	-76(TCCCATATATGG,-,0.00),-74(CCATATATGGAC,+,0.00)
mm_13603.1	chr2	112943418	112943618	+	1	NA	NA	NA	86813	NM_177652	20192	Mm.436657	NM_177652	ENSMUSG00000057378	Ryr3	AI851294|C230090H21|RYR-3	ryanodine receptor 3	protein-coding	0.005000	0.407960	17(CTTTTTAAAATC,+,0.00)
mm_59906.1	chr7	30332133	30332333	+	1	NA	NA	NA	-9858	NM_001033140	68332	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	0.025000	0.492537	
mm_132535.1	chr16	37868393	37868593	+	1	NA	NA	NA	93	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.185000	0.776119	
mm_26431.1	chr3	142618743	142618943	+	1	NA	NA	NA	-1820	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.010000	0.457711	
mm_162834.1	chr10	82578365	82578565	+	1	NA	NA	NA	44763	NM_001135569	544717	Mm.334867	NM_001135567	ENSMUSG00000063320	1190007I07Rik	-	RIKEN cDNA 1190007I07 gene	protein-coding	0.000000	0.477612	
mm_155268.1	chrX	58911408	58911608	+	1	NA	NA	NA	47	NM_023774	75352	Mm.60906	NM_023774	ENSMUSG00000046180	4930550L24Rik	mage-k1	RIKEN cDNA 4930550L24 gene	protein-coding	0.045000	0.472637	
mm_165548.1	chr3	9853197	9853397	+	1	NA	NA	NA	-19618	NM_001195031	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.015000	0.507463	
mm_41502.1	chr5	92331723	92331923	+	1	NA	NA	NA	-4	NM_001310664	109979	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0.025000	0.507463	
mm_120941.1	chr14	76674201	76674401	+	1	NA	NA	NA	-3267	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.010000	0.502488	
mm_56783.1	chr6	116636857	116637057	-	1	NA	NA	NA	-7958	NM_026057	67255	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0.015000	0.522388	
mm_112213.1	chr12	113428516	113428716	-	1	NA	NA	NA	-60949	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.462687	
mm_171784.1	chr5	110118609	110118809	-	1	NA	NA	NA	8617	NM_001163996	675812	Mm.442122	NM_001163996	ENSMUSG00000023284	Zfp605	A830023I12Rik	zinc finger protein 605	protein-coding	0.015000	0.402985	
mm_56217.1	chr6	89364301	89364501	-	1	NA	NA	NA	-1788	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.010000	0.482587	
mm_103326.1	chr11	74522484	74522684	-	1	NA	NA	NA	67574	NM_001015046	380711	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.155000	0.810945	
mm_171659.1	chr4	44013097	44013297	+	1	NA	NA	NA	547	NM_001290470	12757	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.060000	0.616915	
mm_45093.1	chr5	44169111	44169311	-	1	NA	NA	NA	57395	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.000000	0.318408	
mm_118723.1	chr14	22214238	22214438	+	1	NA	NA	NA	194626	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.343284	
mm_169145.1	chr13	62182385	62182585	+	1	NA	NA	NA	52595	NM_001039239	630579	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 80	protein-coding	0.005000	0.462687	
mm_126851.1	chr15	89196051	89196251	+	1	NA	NA	NA	323	NM_027081	69440	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	0.045000	0.636816	
mm_47812.1	chr5	134176652	134176852	-	1	NA	NA	NA	15	NM_033572	94254	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0.110000	0.646766	
mm_15958.1	chr2	165997299	165997499	+	1	NA	NA	NA	4762	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.015000	0.437811	-46(CCCTTTAAAAAG,+,0.00),-46(CCCTTTAAAAAG,-,0.00),-45(CCTTTAAAAAGA,+,0.00),58(CCCTTTATAGAT,+,0.00)
mm_106389.1	chr11	118569881	118570081	-	1	NA	NA	NA	93021	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.085000	0.641791	
mm_66905.1	chr7	59983334	59983534	-	1	NA	NA	NA	-4578	NR_028529	100217429		NR_028529		Snord64	MBII-13	small nucleolar RNA, C/D box 64	snoRNA	0.005000	0.507463	
mm_34332.1	chr4	142238136	142238336	+	1	NA	NA	NA	1165	NM_001109685	71529	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	0.035000	0.537313	
mm_86766.1	chr10	19933988	19934188	+	1	NA	NA	NA	-438	NM_008580	26408	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.105000	0.676617	
mm_72385.1	chr8	81667090	81667290	+	1	NA	NA	NA	324628	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.005000	0.437811	
mm_136850.1	chr17	12790995	12791195	+	1	NA	NA	NA	-21389	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.010000	0.452736	
mm_75775.1	chr8	69996035	69996235	-	1	NA	NA	NA	249	NM_001286450	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.185000	0.776119	
mm_149570.1	chr19	12804782	12804982	+	1	NA	NA	NA	6273	NM_134152	107321	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	0.005000	0.388060	
mm_111607.1	chr12	102399856	102400056	-	1	NA	NA	NA	39857	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.005000	0.547264	
mm_138742.1	chr17	37002448	37002648	+	1	NA	NA	NA	23	NM_001013745	22715	Mm.305561	NM_009559	ENSMUSG00000036036	Zfp57	G19|Zfp-57	zinc finger protein 57	protein-coding	0.040000	0.552239	
mm_74943.1	chr8	25840675	25840875	-	1	NA	NA	NA	12	NM_011791	23808	Mm.27706	NM_011791	ENSMUSG00000031575	Ash2l	-	ash2 (absent, small, or homeotic)-like (Drosophila)	protein-coding	0.100000	0.651741	-57(CACTTTAAGAGC,-,0.00),-56(ACTTTAAGAGCG,+,0.00)
mm_95128.1	chr11	34299598	34299798	+	1	NA	NA	NA	-15124	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.000000	0.487562	
mm_144692.1	chr18	34856438	34856638	+	1	NA	NA	NA	-4669	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.010000	0.562189	
mm_18719.1	chr2	72615067	72615267	-	1	NA	NA	NA	-88343	NR_040503	74541	Mm.410774	NR_040503	ENSMUSG00000085252	8430437L04Rik	-	RIKEN cDNA 8430437L04 gene	ncRNA	0.005000	0.497512	
mm_34303.1	chr4	141750194	141750394	+	1	NA	NA	NA	3619	NM_001081408	75986	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	0.000000	0.338308	
mm_55440.1	chr6	67037114	67037314	-	1	NA	NA	NA	193	NM_007836	13197	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.115000	0.706468	
mm_106733.1	chr12	3894731	3894931	+	1	NA	NA	NA	3087	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.015000	0.537313	
mm_32065.1	chr4	97777767	97777967	+	1	NA	NA	NA	241	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.070000	0.611940	
mm_63808.1	chr7	133637614	133637814	+	1	NA	NA	NA	39	NM_178115	214764	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	0.120000	0.666667	
mm_123890.1	chr14	72710506	72710706	-	1	NA	NA	NA	-603	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.090000	0.616915	
mm_160161.1	chr7	44350709	44350909	+	1	NA	NA	NA	24221	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.015000	0.507463	
mm_152060.1	chr19	6363285	6363485	-	1	NA	NA	NA	-305	NM_011750	22668	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.080000	0.582090	
mm_159015.1	chr1	170232646	170232846	+	1	NA	NA	NA	-125	NM_001033499	545378	Mm.379942	NM_001033499	ENSMUSG00000073494	Sh2d1b2	EAT-2B|Eat2b|Ert|Sh2d1c	SH2 domain containing 1B2	protein-coding	0.015000	0.537313	
mm_148845.1	chr19	6374681	6374881	+	1	NA	NA	NA	-9627	NM_011224	19309	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0.045000	0.681592	
mm_13055.1	chr2	91102418	91102618	+	1	NA	NA	NA	5840	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.005000	0.432836	
mm_44979.1	chr5	36830510	36830710	-	1	NA	NA	NA	39	NM_008550	17160	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0.105000	0.726368	
mm_52615.1	chr6	117173824	117174024	+	1	NA	NA	NA	5389	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.005000	0.462687	
mm_89039.1	chr10	82833836	82834036	+	1	NA	NA	NA	-15	NM_001042523	50493	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	0.025000	0.522388	
mm_110039.1	chr12	17176451	17176651	-	1	NA	NA	NA	337	NM_201531	382571	Mm.40173	NM_201531	ENSMUSG00000051726	Kcnf1	Gm1182|Kv5.1	potassium voltage-gated channel, subfamily F, member 1	protein-coding	0.085000	0.587065	
mm_6093.1	chr1	63214181	63214381	-	1	NA	NA	NA	0	NM_146250	241070	Mm.103354	NM_146250	ENSMUSG00000046856	Gpr1	-	G protein-coupled receptor 1	protein-coding	0.015000	0.492537	
mm_134906.1	chr16	30259932	30260132	-	1	NA	NA	NA	7500	NM_027904	71756	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.030000	0.577114	
mm_18488.1	chr2	62602776	62602976	-	1	NA	NA	NA	-28855	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.005000	0.442786	
mm_109247.1	chr12	109453143	109453343	+	1	NA	NA	NA	-212	NM_001190704	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.120000	0.666667	
mm_66842.1	chr7	48883239	48883439	-	1	NA	NA	NA	-2298	NM_001013368	108961	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.015000	0.457711	-68(CCTTTTCAAGGT,+,0.00)
mm_130751.1	chr15	101270205	101270405	-	1	NA	NA	NA	3459	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.055000	0.616915	
mm_13786.1	chr2	118813935	118814135	+	1	NA	NA	NA	32	NM_026412	51944	Mm.252695	NM_026412	ENSMUSG00000027331	Knstrn	1700025D04Rik|C15orf23|D2Ertd750e|SKAP|Traf4af1	kinetochore-localized astrin/SPAG5 binding	protein-coding	0.045000	0.582090	
mm_82052.1	chr9	122568989	122569189	+	1	NA	NA	NA	-3412	NR_015610	319626	Mm.186748	NR_015610	ENSMUSG00000097736	9530059O14Rik	-	RIKEN cDNA 9530059O14 gene	ncRNA	0.130000	0.761194	
mm_60140.1	chr7	38182705	38182905	+	1	NA	NA	NA	-412	NM_001085385	72244	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0.040000	0.517413	
mm_128979.1	chr15	74833418	74833618	-	1	NA	NA	NA	8125	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.005000	0.422886	
mm_80568.1	chr9	83925047	83925247	+	1	NA	NA	NA	10	NM_001305935	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.105000	0.706468	
mm_52559.1	chr6	116173695	116173895	+	1	NA	NA	NA	19579	NM_177412	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.105000	0.626866	
mm_5911.1	chr1	55019235	55019435	-	1	NA	NA	NA	8143	NM_031179	81898	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	0.010000	0.383085	
mm_120156.1	chr14	60709224	60709424	+	1	NA	NA	NA	-23580	NM_001310594	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.015000	0.522388	
mm_13046.1	chr2	91096705	91096905	+	1	NA	NA	NA	127	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.035000	0.641791	
mm_162820.1	chr10	80330016	80330216	+	1	NA	NA	NA	-29	NM_001204931	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.115000	0.786070	
mm_35837.1	chr4	48044799	48044999	-	1	NA	NA	NA	-406	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.130000	0.731343	
mm_88687.1	chr10	80115775	80115975	+	1	NA	NA	NA	72	NM_001301854	20869	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.165000	0.711443	
mm_112632.1	chr13	15994079	15994279	+	1	NA	NA	NA	-17672	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.417910	61(GGCTATAAAAGG,-,0.00)
mm_169905.1	chr16	53826156	53826356	+	1	NA	NA	NA	-1010512	NR_040495	73820	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0.050000	0.631841	
mm_145217.1	chr18	50052919	50053119	+	1	NA	NA	NA	-263	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.015000	0.567164	
mm_120902.1	chr14	75962296	75962496	+	1	NA	NA	NA	7393	NM_026214	67516	Mm.390712	NM_026214	ENSMUSG00000046523	Kctd4	2210017A09Rik|AU017169	potassium channel tetramerisation domain containing 4	protein-coding	0.030000	0.462687	
mm_47567.1	chr5	124477378	124477578	-	1	NA	NA	NA	757	NM_030259	80291	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.025000	0.393035	
mm_138889.1	chr17	43476985	43477185	+	1	NA	NA	NA	25688	NM_008585	17287	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	0.005000	0.557214	-74(GACTTTTTAAAC,-,0.00),-72(CTTTTTAAACAG,+,0.00)
mm_10366.1	chr2	11705728	11705928	+	1	NA	NA	NA	116	NM_001271500	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.050000	0.616915	
mm_84165.1	chr9	59664251	59664451	-	1	NA	NA	NA	7983	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.005000	0.482587	
mm_126195.1	chr15	78779469	78779669	+	1	NA	NA	NA	-6124	NM_008595	17305	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.040000	0.592040	
mm_152630.1	chr19	12501347	12501547	-	1	NA	NA	NA	549	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.135000	0.771144	
mm_56423.1	chr6	97253064	97253264	-	1	NA	NA	NA	-384	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.025000	0.547264	
mm_125583.1	chr15	59525793	59525993	+	1	NA	NA	NA	-122761	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.020000	0.497512	
mm_105093.1	chr11	100918006	100918206	-	1	NA	NA	NA	21434	NM_213660	20848	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.010000	0.368159	
mm_142246.1	chr17	37483009	37483209	-	1	NA	NA	NA	420	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.020000	0.492537	
mm_148586.1	chr19	5067981	5068181	+	1	NA	NA	NA	3	NM_054042	70445	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.090000	0.761194	
mm_128061.1	chr15	26715261	26715461	-	1	NA	NA	NA	180203	NM_176959	448987	Mm.253378	NM_176959	ENSMUSG00000043556	Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding	0.000000	0.343284	19(TCCTTTAAAAAA,-,0.00),20(CCTTTAAAAAAC,+,0.00)
mm_11506.1	chr2	32567705	32567905	+	1	NA	NA	NA	-3053	NM_010073	13481	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0.015000	0.597015	
mm_107253.1	chr12	28649561	28649761	+	1	NA	NA	NA	59	NM_001286865	19819	Mm.10152	NM_011275	ENSMUSG00000020630	Rnaseh1	-	ribonuclease H1	protein-coding	0.135000	0.711443	
mm_15283.1	chr2	155276487	155276687	+	1	NA	NA	NA	223	NR_046364	66734	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0.150000	0.771144	
mm_38305.1	chr4	136898677	136898877	-	1	NA	NA	NA	67	NM_007572	12259	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	0.025000	0.577114	
mm_74297.1	chr8	126029157	126029357	+	1	NA	NA	NA	34155	NM_008430	16525	Mm.10800	NM_008430	ENSMUSG00000033998	Kcnk1	AI788889|TWIK-1	potassium channel, subfamily K, member 1	protein-coding	0.025000	0.512438	
mm_19004.1	chr2	76881160	76881360	-	1	NA	NA	NA	101287	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.035000	0.497512	
mm_9844.1	chr1	184731843	184732043	-	1	NA	NA	NA	550	NM_008250	15284	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.095000	0.721393	
mm_63720.1	chr7	130820224	130820424	+	1	NA	NA	NA	-45400	NM_001346515	101476	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.000000	0.487562	
mm_64707.1	chr7	4603948	4604148	-	1	NA	NA	NA	-7	NM_207270	545902	Mm.188925	NM_207270	ENSMUSG00000035429	Ptprh	R-PTP-H|sap-1	protein tyrosine phosphatase, receptor type, H	protein-coding	0.010000	0.507463	-68(CCCTTTTTAAGG,-,0.00),-66(CTTTTTAAGGTC,+,0.00)
mm_111670.1	chr12	103338127	103338327	-	1	NA	NA	NA	17774	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.040000	0.587065	
mm_124175.1	chr14	93840975	93841175	-	1	NA	NA	NA	47813	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.005000	0.427861	
mm_43333.1	chr5	135009796	135009996	+	1	NA	NA	NA	440	NR_033794	68758	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.050000	0.616915	
mm_18147.1	chr2	45066685	45066885	-	1	NA	NA	NA	43492	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.015000	0.477612	
mm_108817.1	chr12	95695258	95695458	+	1	NA	NA	NA	3132	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.080000	0.681592	
mm_25532.1	chr3	114913515	114913715	+	1	NA	NA	NA	8980	NM_001286750	229759	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding	0.000000	0.338308	
mm_39117.1	chr4	154944030	154944230	-	1	NA	NA	NA	-16053	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.005000	0.482587	
mm_160325.1	chr8	3602275	3602475	+	1	NA	NA	NA	14925	NM_001347111	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.005000	0.537313	
mm_33383.1	chr4	129573663	129573863	+	1	NA	NA	NA	-122	NM_001162433	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.005000	0.577114	
mm_107945.1	chr12	72085756	72085956	+	1	NA	NA	NA	17	NM_024205	104771	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	0.030000	0.562189	
mm_104359.1	chr11	94305197	94305397	-	1	NA	NA	NA	16614	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.005000	0.427861	
mm_16776.1	chr2	9884241	9884441	-	1	NA	NA	NA	3095	NR_024257	381347	Mm.441450	NR_024257		4930412O13Rik	ENSMUSG00000075535|Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.040000	0.587065	-47(CCCTTTAAAAAA,-,0.00)
mm_65859.1	chr7	29344752	29344952	-	1	NA	NA	NA	40847	NM_013874	29861	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.020000	0.497512	
mm_87761.1	chr10	60291580	60291780	+	1	NA	NA	NA	7219	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.035000	0.582090	
mm_119446.1	chr14	46882834	46883034	+	1	NA	NA	NA	-31	NM_028966	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.110000	0.706468	
mm_90441.1	chr10	127643080	127643280	+	1	NA	NA	NA	194	NM_009284	20852	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.060000	0.601990	-31(GTTTTTAGGGCC,+,0.00)
mm_142534.1	chr17	46520557	46520757	-	1	NA	NA	NA	23868	NM_207161	381101	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	0.040000	0.582090	
mm_103736.1	chr11	80063179	80063379	-	1	NA	NA	NA	17712	NM_001277106	54394	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.000000	0.288557	
mm_152399.1	chr19	10555711	10555911	-	1	NA	NA	NA	-48	NM_001277860	68642	Mm.31236	NM_026798	ENSMUSG00000024667	Tmem216	1110017C22Rik|2810441K11Rik|4921533J23Rik|A930021F15Rik|AI482550	transmembrane protein 216	protein-coding	0.105000	0.676617	
mm_149545.1	chr19	12585766	12585966	+	1	NA	NA	NA	10700	NR_015503	74333	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	0.005000	0.273632	
mm_101904.1	chr11	49203119	49203319	-	1	NA	NA	NA	-281	NM_001024846	22720	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0.020000	0.492537	
mm_111135.1	chr12	81568098	81568298	-	1	NA	NA	NA	276	NM_020330	56622	Mm.117130	NM_020330	ENSMUSG00000008438	Adam21	Adam31	a disintegrin and metallopeptidase domain 21	protein-coding	0.015000	0.402985	
mm_3273.1	chr1	136569813	136570013	+	1	NA	NA	NA	-54988	NM_177643	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.025000	0.572139	
mm_125750.1	chr15	73748275	73748475	+	1	NA	NA	NA	349	NM_008975	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.180000	0.815920	-34(CGCTATAAATAG,-,0.00)
mm_83478.1	chr9	45900161	45900361	-	1	NA	NA	NA	-6308	NM_008794	18554	Mm.3255	NM_008794	ENSMUSG00000035382	Pcsk7	AA959856|PC7|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding	0.010000	0.402985	
mm_163902.1	chr14	30148254	30148454	-	1	NA	NA	NA	125721	NM_175343	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.010000	0.542289	
mm_150602.1	chr19	40748711	40748911	+	1	NA	NA	NA	-82468	NM_172839	240665	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.040000	0.552239	
mm_19809.1	chr2	110314179	110314379	-	1	NA	NA	NA	-8554	NM_130452	170442	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	0.025000	0.527363	
mm_15201.1	chr2	154206422	154206622	+	1	NA	NA	NA	6142	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.040000	0.611940	
mm_100717.1	chr11	3894995	3895195	-	1	NA	NA	NA	31	NM_026150	67430	Mm.347950	NM_026150	ENSMUSG00000020434	4921536K21Rik	AV043724	RIKEN cDNA 4921536K21 gene	protein-coding	0.050000	0.547264	
mm_80506.1	chr9	78615707	78615907	+	1	NA	NA	NA	261	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.070000	0.641791	-56(GCTTTTAGGCGC,+,0.00)
mm_90951.1	chr10	13182328	13182528	-	1	NA	NA	NA	-4405	NM_029172	75122	Mm.159433	NM_029172	ENSMUSG00000019815	Zc2hc1b	4930519B02Rik|Fam164b	zinc finger, C2HC-type containing 1B	protein-coding	0.030000	0.542289	
mm_87233.1	chr10	40629960	40630160	+	1	NA	NA	NA	49	NR_133568	70503	Mm.252862	NM_027442	ENSMUSG00000063428	Ddo	5330420D20Rik|5730402C02Rik|AI467244	D-aspartate oxidase	protein-coding	0.010000	0.467662	
mm_79616.1	chr9	58651961	58652161	+	1	NA	NA	NA	69821	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.005000	0.383085	
mm_87731.1	chr10	60131865	60132065	+	1	NA	NA	NA	5189	NR_105871	102465546		NR_105871	ENSMUSG00000105468	Mir6906	mmu-mir-6906	microRNA 6906	ncRNA	0.015000	0.572139	
mm_155940.1	chrX	104200746	104200946	+	1	NA	NA	NA	271	NM_001077354	245555	Mm.381907	NM_001077354	ENSMUSG00000046449	C77370	A230051P11|C77386|KIDLIA|Kiaa2022|Xpn|mKIAA2022	expressed sequence C77370	protein-coding	0.115000	0.731343	
mm_112860.1	chr13	20842225	20842425	+	1	NA	NA	NA	48212	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.398010	
mm_10857.1	chr2	25054351	25054551	+	1	NA	NA	NA	72	NM_001177655	56876	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.090000	0.721393	
mm_60004.1	chr7	30715783	30715983	+	1	NA	NA	NA	3674	NM_001290627	11944	Mm.12821	NM_018731	ENSMUSG00000005553	Atp4a	-	ATPase, H+/K+ exchanging, gastric, alpha polypeptide	protein-coding	0.050000	0.532338	
mm_5234.1	chr1	14755857	14756057	-	1	NA	NA	NA	9	NM_010827	17681	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0.035000	0.606965	
mm_1464.1	chr1	69681476	69681676	+	1	NA	NA	NA	4384	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.000000	0.303483	
mm_156509.1	chrX	150497412	150497612	+	1	NA	NA	NA	-38362	NM_001164683	382245	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding	0.005000	0.457711	
mm_51247.1	chr6	71722728	71722928	+	1	NA	NA	NA	15147	NM_178608	52250	Mm.146332	NM_178608	ENSMUSG00000052852	Reep1	D6Ertd253e	receptor accessory protein 1	protein-coding	0.010000	0.527363	
mm_143787.1	chr17	81731336	81731536	-	1	NA	NA	NA	6951	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.402985	
mm_150371.1	chr19	34836892	34837092	+	1	NA	NA	NA	-16219	NR_029783	723826		NR_029783	ENSMUSG00000065594	Mir107	Mirn107|mir-107|mmu-mir-107	microRNA 107	ncRNA	0.025000	0.457711	
mm_21948.1	chr2	167062639	167062839	-	1	NA	NA	NA	-195	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.140000	0.781095	
mm_29905.1	chr3	131470910	131471110	-	1	NA	NA	NA	-93758	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.010000	0.572139	
mm_43032.1	chr5	123973535	123973735	+	1	NA	NA	NA	7	NM_145070	29816	Mm.149954	NM_145070	ENSMUSG00000000915	Hip1r	AA410023|mKIAA0655	huntingtin interacting protein 1 related	protein-coding	0.150000	0.786070	
mm_76593.1	chr8	89042756	89042956	-	1	NA	NA	NA	1306	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.140000	0.796020	
mm_65003.1	chr7	17042476	17042676	-	1	NA	NA	NA	14103	NM_016868	53417	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0.015000	0.477612	
mm_97663.1	chr11	79653084	79653284	+	1	NA	NA	NA	21902	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	0.045000	0.572139	
mm_106941.1	chr12	8712891	8713091	+	1	NA	NA	NA	38310	NM_030723	80913	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.005000	0.268657	
mm_14120.1	chr2	125909028	125909228	+	1	NA	NA	NA	42905	NM_001291002	69976	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	0.020000	0.393035	
mm_136857.1	chr17	12805540	12805740	+	1	NA	NA	NA	-35934	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.010000	0.417910	
mm_152211.1	chr19	7802587	7802787	-	1	NA	NA	NA	-20	NM_146232	236149	Mm.207060	NM_146232	ENSMUSG00000053303	Slc22a26	-	solute carrier family 22 (organic cation transporter), member 26	protein-coding	0.000000	0.378109	
mm_13487.1	chr2	106693070	106693270	+	1	NA	NA	NA	-289	NM_001143683	77015	Mm.45628	NM_029837	ENSMUSG00000016386	Mpped2	239Fb|2700082O15Rik|AV354767|AW060960	metallophosphoesterase domain containing 2	protein-coding	0.040000	0.601990	
mm_102018.1	chr11	51635781	51635981	-	1	NA	NA	NA	15	NM_025346	66089	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	0.130000	0.681592	
mm_64350.1	chr7	142383351	142383551	+	1	NA	NA	NA	4419	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.030000	0.557214	
mm_164172.1	chr15	75116643	75116843	+	1	NA	NA	NA	-4794	NM_001099217	100041546	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0.010000	0.467662	
mm_35956.1	chr4	53130795	53130995	-	1	NA	NA	NA	29000	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.000000	0.417910	
mm_156972.1	chrX	170008252	170008452	+	1	NA	NA	NA	-29435	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.000000	0.482587	
mm_108623.1	chr12	85598621	85598821	+	1	NA	NA	NA	-384	NM_001205052	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.035000	0.577114	
mm_166787.1	chr6	145048963	145049163	-	1	NA	NA	NA	-251	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.055000	0.552239	
mm_97656.1	chr11	79528085	79528285	+	1	NA	NA	NA	2424	NM_146023	101488212	Mm.439665	NM_146023	ENSMUSG00000070354	Gm21975	Evi2a-evi2b	predicted gene 21975	protein-coding	0.010000	0.452736	-84(CTCCTTTTAAGG,-,0.00),-83(TCCTTTTAAGGG,-,0.00),-82(CCTTTTAAGGGA,+,0.00),-81(CTTTTAAGGGAG,+,0.00)
mm_76759.1	chr8	95576174	95576374	-	1	NA	NA	NA	-667	NM_001310539	70993	Mm.486561	NM_027640	ENSMUSG00000048400	Prss54	4931432M23Rik|Klkbl4	protease, serine 54	protein-coding	0.045000	0.477612	
mm_130931.1	chr15	103167938	103168138	-	1	NA	NA	NA	-4754	NM_027885	71726	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0.015000	0.532338	
mm_18336.1	chr2	58052720	58052920	-	1	NA	NA	NA	-68	NM_029972	77767	Mm.91712	NM_029972	ENSMUSG00000026830	Ermn	A330104H05Rik|AI854460|ermin|mKIAA1189	ermin, ERM-like protein	protein-coding	0.030000	0.457711	
mm_126565.1	chr15	82171096	82171296	+	1	NA	NA	NA	23927	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.065000	0.656716	
mm_26518.1	chr3	145924189	145924389	+	1	NA	NA	NA	27	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.085000	0.686567	
mm_38711.1	chr4	145224342	145224542	-	1	NA	NA	NA	22428	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.020000	0.527363	
mm_82601.1	chr9	21321574	21321774	-	1	NA	NA	NA	955	NM_001199186	68682	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0.015000	0.522388	15(GCCTCTTAAGGC,-,0.00),16(CCTCTTAAGGCT,+,0.00)
mm_66178.1	chr7	34013877	34014077	-	1	NA	NA	NA	-35	NM_001100464	233099	Mm.110829	NM_001100464	ENSMUSG00000066584	Scgb2b27	Abpbg27|Abpbg5|Scgb2b5	secretoglobin, family 2B, member 27	protein-coding	0.015000	0.502488	58(TCGTTTATAAGG,-,0.00)
mm_59931.1	chr7	30423503	30423703	+	1	NA	NA	NA	299	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.010000	0.527363	
mm_81801.1	chr9	116175193	116175393	+	1	NA	NA	NA	70	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.115000	0.701493	
mm_127300.1	chr15	100217099	100217299	+	1	NA	NA	NA	-10660	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.005000	0.343284	
mm_26309.1	chr3	142519072	142519272	+	1	NA	NA	NA	-11164	NM_001083312	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.005000	0.407960	
mm_32547.1	chr4	109385804	109386004	+	1	NA	NA	NA	20353	NR_131195	102635290	Mm.427859	NR_131195		Ttc39aos1	Gm12750|OTTMUSG00000008290|lincRNA-EPS	Ttc39a opposite strand RNA 1	ncRNA	0.015000	0.427861	
mm_94380.1	chr11	5195909	5196109	+	1	NA	NA	NA	-43787	NM_080595	140703	Mm.840	NM_080595	ENSMUSG00000034164	Emid1	AW122071|CO-5|Emu1	EMI domain containing 1	protein-coding	0.040000	0.537313	-34(GCCTTGAAAAGA,-,0.00)
mm_37948.1	chr4	133194421	133194621	-	1	NA	NA	NA	-1134	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.020000	0.631841	
mm_77503.1	chr8	122678561	122678761	-	1	NA	NA	NA	-486	NM_177289	12398	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0.140000	0.781095	
mm_126300.1	chr15	79358293	79358493	+	1	NA	NA	NA	9991	NM_001304832	17133	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.030000	0.542289	
mm_118800.1	chr14	24622038	24622238	+	1	NA	NA	NA	131457	NM_011297	20088	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	0.000000	0.487562	
mm_41050.1	chr5	86172945	86173145	+	1	NA	NA	NA	-302	NM_172712	231380	Mm.34012	NM_172712	ENSMUSG00000035898	Uba6	4930542H01|5730469D23Rik|AU021846|AW124799|E1-L2|Ube1l2	ubiquitin-like modifier activating enzyme 6	protein-coding	0.055000	0.542289	
mm_51704.1	chr6	86668704	86668904	+	1	NA	NA	NA	355	NM_010751	17119	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.120000	0.726368	
mm_150995.1	chr19	46618550	46618750	+	1	NA	NA	NA	-4751	NM_001177813	226178	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.020000	0.457711	
mm_113995.1	chr13	52583207	52583407	+	1	NA	NA	NA	-130	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.090000	0.706468	
mm_170410.1	chr1	86582850	86583050	+	1	NA	NA	NA	-449	NM_008801	18582	Mm.12925	NM_008801	ENSMUSG00000026239	Pde6d	AI841218|PrBP/delta	phosphodiesterase 6D, cGMP-specific, rod, delta	protein-coding	0.035000	0.512438	
mm_96318.1	chr11	63989642	63989842	+	1	NA	NA	NA	25516	NR_131111	78883	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	0.010000	0.412935	
mm_47842.1	chr5	134314465	134314665	-	1	NA	NA	NA	195	NM_001080746	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.130000	0.786070	
mm_103873.1	chr11	83525908	83526108	-	1	NA	NA	NA	-3909	NM_001045543	629303	Mm.390417	NM_001045543	ENSMUSG00000018925	Heatr9	Gm11435|OTTMUSG00000000990	HEAT repeat containing 9	protein-coding	0.015000	0.492537	
mm_119162.1	chr14	31929489	31929689	+	1	NA	NA	NA	-99174	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.040000	0.597015	
mm_166911.1	chr7	29281757	29281957	-	1	NA	NA	NA	120	NM_001082548	20733	Mm.295230	NM_011464	ENSMUSG00000074227	Spint2	AL024025|C76321|HAI-2	serine protease inhibitor, Kunitz type 2	protein-coding	0.100000	0.631841	
mm_40209.1	chr5	37047017	37047217	+	1	NA	NA	NA	-3740	NM_178394	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0.010000	0.527363	
mm_100333.1	chr11	118318963	118319163	+	1	NA	NA	NA	23471	NM_021440	58251	Mm.439815	NM_021440	ENSMUSG00000076433	BC100451	Cep295nl|Ddc8|FS39|Kiaa1731nl	cDNA sequence BC100451	protein-coding	0.010000	0.497512	
mm_21918.1	chr2	166821284	166821484	-	1	NA	NA	NA	15803	NM_001085495	99371	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.005000	0.497512	
mm_26125.1	chr3	137867721	137867921	+	1	NA	NA	NA	146	NM_001033155	70604	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	0.200000	0.870647	
mm_34196.1	chr4	140712681	140712881	+	1	NA	NA	NA	11308	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.030000	0.601990	
mm_21370.1	chr2	157204413	157204613	-	1	NA	NA	NA	21	NM_011249	19650	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	retinoblastoma-like 1 (p107)	protein-coding	0.135000	0.656716	
mm_37123.1	chr4	116659456	116659656	-	1	NA	NA	NA	-7882	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.005000	0.398010	
mm_59662.1	chr7	28277644	28277844	+	1	NA	NA	NA	38	NM_001177427	434156	Mm.118535	NM_001177427	ENSMUSG00000070705	Eid2b	3010005C08Rik	EP300 interacting inhibitor of differentiation 2B	protein-coding	0.110000	0.656716	
mm_166314.1	chr5	109558815	109559015	-	1	NA	NA	NA	78	NM_016715	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.150000	0.751244	
mm_52296.1	chr6	108783026	108783226	+	1	NA	NA	NA	67	NM_026011	67166	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0.140000	0.741294	
mm_779.1	chr1	44551653	44551853	+	1	NA	NA	NA	82	NM_028450	70676	Mm.133132	NM_027506	ENSMUSG00000056870	Gulp1	3110030A04Rik|5730529O06Rik|CED-6|Ced6|GULP|Gulp-2	GULP, engulfment adaptor PTB domain containing 1	protein-coding	0.075000	0.646766	
mm_53603.1	chr6	138151040	138151240	+	1	NA	NA	NA	9546	NM_001347489	56615	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.000000	0.353234	
mm_142807.1	chr17	50879734	50879934	-	1	NA	NA	NA	181153	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.000000	0.343284	14(GCTTTAATAGCA,+,0.00)
mm_61696.1	chr7	81114704	81114904	+	1	NA	NA	NA	5	NM_001004184	434203	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	0.005000	0.537313	
mm_117579.1	chr13	88125652	88125852	-	1	NA	NA	NA	-695720	NM_010103	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.000000	0.457711	
mm_50693.1	chr6	51590680	51590880	+	1	NA	NA	NA	46257	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.010000	0.353234	
mm_118350.1	chr13	114931990	114932190	-	1	NA	NA	NA	-49	NM_008396	16398	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5	integrin alpha 2	protein-coding	0.035000	0.616915	
mm_81090.1	chr9	106367860	106368060	+	1	NA	NA	NA	-672	NM_153459	235584	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.055000	0.562189	
mm_61946.1	chr7	90184314	90184514	+	1	NA	NA	NA	54182	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.293532	
mm_55060.1	chr6	49047831	49048031	-	1	NA	NA	NA	11413	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.030000	0.522388	
mm_75632.1	chr8	64718581	64718781	-	1	NA	NA	NA	14897	NM_025436	66234	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	0.015000	0.393035	-97(AGGTTTTAAAGG,-,0.00),-96(GGTTTTAAAGGC,-,0.00),-95(GTTTTAAAGGCC,+,0.00),9(TGCCTTTTAAGC,-,0.00),11(CCTTTTAAGCCT,+,0.00)
mm_71203.1	chr8	40887925	40888125	+	1	NA	NA	NA	25658	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.000000	0.383085	
mm_37284.1	chr4	119072863	119073063	-	1	NA	NA	NA	-3852	NR_131914	433751	Mm.224312	NR_131914	ENSMUSG00000066060	Gm12866	OTTMUSG00000008833	predicted gene 12866	ncRNA	0.065000	0.651741	
mm_58051.1	chr6	136854305	136854505	-	1	NA	NA	NA	3195	NM_026639	109978	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	0.020000	0.467662	
mm_48947.1	chr6	4539911	4540111	+	1	NA	NA	NA	34393	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.000000	0.333333	61(CTATATAAAAGA,-,0.00)
mm_44629.1	chr5	26493213	26493413	-	1	NA	NA	NA	1	NR_029445	75942	Mm.50087	NR_029445	ENSMUSG00000029044	4930584F24Rik	1700001J09Rik|4930522C06Rik	RIKEN cDNA 4930584F24 gene	ncRNA	0.005000	0.507463	
mm_73039.1	chr8	94227563	94227763	+	1	NA	NA	NA	13062	NM_172410	71805	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0.000000	0.432836	
mm_138657.1	chr17	35868377	35868577	+	1	NA	NA	NA	1862	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.040000	0.696517	
mm_53983.1	chr6	6862748	6862948	-	1	NA	NA	NA	-486	NM_010057	13396	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding	0.065000	0.616915	
mm_112430.1	chr13	4434263	4434463	+	1	NA	NA	NA	20	NM_030611	83702	Mm.196666	NM_030611	ENSMUSG00000021210	Akr1c6	3alpha-HSD|Akr1c1|Hsd17b5	aldo-keto reductase family 1, member C6	protein-coding	0.005000	0.427861	
mm_153890.1	chr19	46962444	46962644	-	1	NA	NA	NA	-193	NR_028353	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.035000	0.597015	
mm_12603.1	chr2	74679593	74679793	+	1	NA	NA	NA	135	NR_073086	15431	Mm.207763	NM_008273	ENSMUSG00000042499	Hoxd11	E230017H14Rik|Hox-4.6|Hox-5.4|Hox-5.5	homeobox D11	protein-coding	0.070000	0.532338	
mm_153995.1	chr19	50678482	50678682	-	1	NA	NA	NA	64	NM_001252501	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.125000	0.751244	
mm_41687.1	chr5	100518343	100518543	+	1	NA	NA	NA	134	NM_012001	26891	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e	COP9 signalosome subunit 4	protein-coding	0.075000	0.621891	
mm_104342.1	chr11	94242560	94242760	-	1	NA	NA	NA	-81	NM_181819	278507	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	0.005000	0.587065	
mm_72067.1	chr8	71487755	71487955	+	1	NA	NA	NA	-248	NM_032544	70359	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	0.080000	0.616915	
mm_110218.1	chr12	28623308	28623508	-	1	NA	NA	NA	-78	NM_027866	71693	Mm.30724	NM_027866	ENSMUSG00000036655	Colec11	CL-K1	collectin sub-family member 11	protein-coding	0.010000	0.601990	
mm_136579.1	chr17	3557450	3557650	+	1	NA	NA	NA	163	NM_146074	224481	Mm.226554	NM_146074	ENSMUSG00000036983	Tfb1m	AI429207	transcription factor B1, mitochondrial	protein-coding	0.100000	0.646766	
mm_149901.1	chr19	25505769	25505969	+	1	NA	NA	NA	163	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.105000	0.691542	
mm_153148.1	chr19	34251699	34251899	-	1	NA	NA	NA	3574	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.025000	0.502488	
mm_86887.1	chr10	22282948	22283148	+	1	NA	NA	NA	9574	NM_001177775	667281	Mm.484254	NM_001177775	ENSMUSG00000075297	H60b	EG667281	histocompatibility 60b	protein-coding	0.015000	0.502488	
mm_20112.1	chr2	121140570	121140770	-	1	NA	NA	NA	28	NM_177846	329504	Mm.219449	NM_177846	ENSMUSG00000074890	Lcmt2	D330024M17|Tyw4	leucine carboxyl methyltransferase 2	protein-coding	0.080000	0.611940	
mm_100947.1	chr11	6560874	6561074	-	1	NA	NA	NA	791	NM_001190344	216527	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0.020000	0.462687	-31(GCTTAAAGAGCA,+,0.00)
mm_171224.1	chr3	60501112	60501312	+	1	NA	NA	NA	33	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.180000	0.796020	
mm_61453.1	chr7	75586220	75586420	+	1	NA	NA	NA	130786	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.025000	0.577114	
mm_148329.1	chr18	84086326	84086526	-	1	NA	NA	NA	136	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.035000	0.517413	
mm_69195.1	chr7	127345272	127345472	-	1	NA	NA	NA	-58	NM_146202	233890	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0.120000	0.741294	
mm_134514.1	chr16	19200186	19200386	-	1	NA	NA	NA	86455	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.010000	0.472637	-98(GCCTATAAAAGG,-,0.00)
mm_61954.1	chr7	90207729	90207929	+	1	NA	NA	NA	57603	NM_029256	75338	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.015000	0.398010	-55(ACTTATAAAGCC,+,0.00)
mm_46784.1	chr5	112577816	112578016	-	1	NA	NA	NA	-718	NM_001253916	56747	Mm.143742	NM_019982	ENSMUSG00000058153	Sez6l	AI843918|AIG1|AW539724|Acig1|BSRP-B|mKIAA0927	seizure related 6 homolog like	protein-coding	0.020000	0.557214	-35(GGCTATAAGTGG,-,0.00)
mm_58286.1	chr6	145863505	145863705	-	1	NA	NA	NA	1815	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.090000	0.676617	
mm_161389.1	chr14	79301469	79301669	-	1	NA	NA	NA	66	NM_025427	66214	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	0.075000	0.651741	
mm_82075.1	chr9	122950979	122951179	+	1	NA	NA	NA	-2	NM_010620	209737	Mm.278920	NM_010620	ENSMUSG00000036768	Kif15	3110023M17Rik|3930402I10Rik|D330038N01|HKLP2|Knsl7|b2b1117.1Clo|b2b1117.1aClo	kinesin family member 15	protein-coding	0.100000	0.621891	
mm_170777.1	chr2	168242339	168242539	-	1	NA	NA	NA	11817	NM_001160330	69372	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	0.035000	0.462687	
mm_76665.1	chr8	93379667	93379867	-	1	NA	NA	NA	-42558	NM_021456	12623	Mm.22720	NM_021456	ENSMUSG00000057074	Ces1g	Ces-1|Ces1|Ses-1	carboxylesterase 1G	protein-coding	0.005000	0.457711	
mm_49825.1	chr6	37732527	37732727	+	1	NA	NA	NA	-138184	NM_001272064	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.035000	0.532338	
mm_168974.1	chr12	87583784	87583984	+	1	NA	NA	NA	-18781	NM_001270792	100039087	Mm.458830	NM_001270792	ENSMUSG00000096276	Gm2042	-	predicted gene 2042	protein-coding	0.045000	0.557214	
mm_23103.1	chr3	37365352	37365552	+	1	NA	NA	NA	16799	NM_008006	14173	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0.010000	0.412935	
mm_13279.1	chr2	101621703	101621903	+	1	NA	NA	NA	-2945	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.025000	0.482587	
mm_58587.1	chr7	4943906	4944106	+	1	NA	NA	NA	18162	NM_173008	269855	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	0.005000	0.547264	
mm_44396.1	chr5	17835628	17835828	-	1	NA	NA	NA	168	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.393035	-33(TTTTTTAAAGCT,+,0.00)
mm_141528.1	chr17	31841064	31841264	-	1	NA	NA	NA	14628	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.005000	0.437811	
mm_121438.1	chr14	120418857	120419057	+	1	NA	NA	NA	-59504	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.045000	0.512438	
mm_48149.1	chr5	137150949	137151149	-	1	NA	NA	NA	-34842	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.487562	
mm_119838.1	chr14	54428496	54428696	+	1	NA	NA	NA	1687	NM_026851	68836	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	0.010000	0.492537	
mm_138263.1	chr17	34595987	34596187	+	1	NA	NA	NA	-1763	NM_001271424	11596	Mm.3383	NM_007425	ENSMUSG00000015452	Ager	RAGE	advanced glycosylation end product-specific receptor	protein-coding	0.020000	0.502488	
mm_118253.1	chr13	112349134	112349334	-	1	NA	NA	NA	60716	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.015000	0.502488	
mm_67936.1	chr7	100120436	100120636	-	1	NA	NA	NA	964	NM_133692	67967	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0.010000	0.388060	
mm_163745.1	chr13	119755293	119755493	+	1	NA	NA	NA	489	NM_175538	245269	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0.060000	0.626866	
mm_120811.1	chr14	75052281	75052481	+	1	NA	NA	NA	36354	NM_198642	271221	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.005000	0.328358	
mm_167094.1	chr7	107801090	107801290	-	1	NA	NA	NA	-11	NM_172908	244199	Mm.99576	NM_172908	ENSMUSG00000048236	Ovch2	9230106D23Rik|Ovtn	ovochymase 2	protein-coding	0.010000	0.393035	
mm_132653.1	chr16	41533214	41533414	+	1	NA	NA	NA	-28	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.105000	0.676617	
mm_21259.1	chr2	156392877	156393077	-	1	NA	NA	NA	2	NR_024329	347740	Mm.324242	NR_024329		2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	0.100000	0.701493	
mm_109804.1	chr12	3309805	3310005	-	1	NA	NA	NA	64	NM_016676	19325	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.120000	0.696517	
mm_155556.1	chrX	75095974	75096174	+	1	NA	NA	NA	220	NM_001030307	245474	Mm.291062	NM_001030307	ENSMUSG00000031403	Dkc1	BC068171	dyskeratosis congenita 1, dyskerin	protein-coding	0.060000	0.582090	
mm_106214.1	chr11	116852244	116852444	-	1	NA	NA	NA	750	NM_011358	20382	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0.145000	0.721393	
mm_131211.1	chr16	8770505	8770705	+	1	NA	NA	NA	-32263	NM_001003918	252870	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.010000	0.577114	-35(CACTATAAAAGG,-,0.00),-5(CACTCTTTAAGC,-,0.00)
mm_91970.1	chr10	61432695	61432895	-	1	NA	NA	NA	14823	NM_013611	18119	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0.035000	0.507463	
mm_16792.1	chr2	10080060	10080260	-	1	NA	NA	NA	350	NM_020615	11949	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	0.075000	0.631841	
mm_64182.1	chr7	141459423	141459623	+	1	NA	NA	NA	-1571	NM_001025103	213573	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.055000	0.631841	
mm_149849.1	chr19	25057068	25057268	+	1	NA	NA	NA	57639	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.005000	0.557214	
mm_74494.1	chr8	5105147	5105347	-	1	NA	NA	NA	40	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.010000	0.442786	-34(GGGTTTAAAAGT,-,0.00)
mm_142824.1	chr17	51759711	51759911	-	1	NA	NA	NA	52243	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.005000	0.283582	
mm_58757.1	chr7	13450736	13450936	+	1	NA	NA	NA	-5	NM_001033418	330470	Mm.291102	NM_001033418	ENSMUSG00000074378	Bsph1	Gm767	binder of sperm protein homolog 1	protein-coding	0.000000	0.492537	
mm_166383.1	chr5	131472280	131472480	-	1	NA	NA	NA	-164858	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.050000	0.621891	
mm_16696.1	chr2	6885066	6885266	-	1	NA	NA	NA	-170	NM_001160293	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.005000	0.422886	
mm_139104.1	chr17	47207013	47207213	+	1	NA	NA	NA	-23117	NM_172622	224829	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.005000	0.427861	
mm_167523.1	chr9	20952944	20953144	+	1	NA	NA	NA	-65	NM_001199431	13433	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0.050000	0.626866	
mm_126744.1	chr15	85735500	85735700	+	1	NA	NA	NA	36	NM_001113418	19013	Mm.212789	NM_011144	ENSMUSG00000022383	Ppara	4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar	peroxisome proliferator activated receptor alpha	protein-coding	0.120000	0.786070	
mm_150717.1	chr19	43490005	43490205	+	1	NA	NA	NA	34500	NM_010324	14718	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.005000	0.542289	
mm_26006.1	chr3	135298708	135298908	+	1	NA	NA	NA	-8892	NM_178877	97086	Mm.441764	NM_178877	ENSMUSG00000037994	Slc9b2	C80638|NHA2|NHE10|Nhedc2|nha-oc|nhaoc	solute carrier family 9, subfamily B (NHA2, cation proton antiporter 2), member 2	protein-coding	0.010000	0.507463	
mm_119824.1	chr14	54253552	54253752	+	1	NA	NA	NA	277	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.045000	0.532338	86(CAGTATATAAAG,-,0.00)
mm_45946.1	chr5	90263288	90263488	-	1	NA	NA	NA	-39392	NM_001163456	231430	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	0.015000	0.467662	
mm_155420.1	chrX	73491240	73491440	+	1	NA	NA	NA	7739	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.010000	0.542289	
mm_105318.1	chr11	102887845	102888045	-	1	NA	NA	NA	2776	NM_025766	66784	Mm.483216	NM_025766	ENSMUSG00000075510	Fam187a	4933439F11Rik	family with sequence similarity 187, member A	protein-coding	0.010000	0.507463	
mm_1154.1	chr1	60812135	60812335	+	1	NA	NA	NA	65847	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.000000	0.522388	
mm_9671.1	chr1	178318105	178318305	-	1	NA	NA	NA	-948	NM_025511	66359	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0.050000	0.512438	
mm_161757.1	chr17	35263857	35264057	+	1	NA	NA	NA	834	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.090000	0.621891	
mm_56223.1	chr6	89867204	89867404	-	1	NA	NA	NA	3225	NM_053220	113847	Mm.431989	NM_053220	ENSMUSG00000068231	Vmn1r43	V1ra2|V1ra5	vomeronasal 1 receptor 43	protein-coding	0.025000	0.447761	
mm_143056.1	chr17	57004719	57004919	-	1	NA	NA	NA	-4714	NM_008954	19197	Mm.86487	NM_008954	ENSMUSG00000002664	Pspn	PSP	persephin	protein-coding	0.005000	0.557214	
mm_86510.1	chr10	7662698	7662898	+	1	NA	NA	NA	-573	NR_030698	320642	Mm.398806	NR_030698		A630066F11Rik	-	RIKEN cDNA A630066F11 gene	ncRNA	0.055000	0.656716	
mm_72747.1	chr8	85091011	85091211	+	1	NA	NA	NA	7842	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.030000	0.572139	
mm_120872.1	chr14	75237571	75237771	+	1	NA	NA	NA	-4616	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.005000	0.328358	
mm_11587.1	chr2	33215916	33216116	+	1	NA	NA	NA	55	NM_011923	26360	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0.025000	0.636816	-30(GCTTTTCTGGGG,+,0.00)
mm_68800.1	chr7	125488648	125488848	-	1	NA	NA	NA	2794	NM_026330	67711	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.030000	0.462687	
mm_146134.1	chr18	74714645	74714845	+	1	NA	NA	NA	63710	NR_028560	100217466		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	0.005000	0.547264	
mm_39823.1	chr5	30797434	30797634	+	1	NA	NA	NA	-17107	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.020000	0.606965	
mm_101590.1	chr11	34681831	34682031	-	1	NA	NA	NA	101974	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.025000	0.358209	
mm_120376.1	chr14	64588003	64588203	+	1	NA	NA	NA	-12	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA	0.030000	0.452736	
mm_158488.1	chrX	142323855	142324055	-	1	NA	NA	NA	-17757	NM_021487	66240	Mm.58507	NM_021487	ENSMUSG00000090122	Kcne1l	1500015C14Rik|Kcne5|Mink	potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	protein-coding	0.005000	0.378109	
mm_118159.1	chr13	105291863	105292063	-	1	NA	NA	NA	1051	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.015000	0.601990	
mm_104652.1	chr11	97575082	97575282	-	1	NA	NA	NA	-56	NM_018873	56013	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.175000	0.791045	
mm_130968.1	chr15	103319625	103319825	-	1	NA	NA	NA	-9287	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.025000	0.492537	
mm_74133.1	chr8	123212737	123212937	+	1	NA	NA	NA	-21	NM_177279	320869	Mm.258354	NM_177279	ENSMUSG00000048478	Spata33	4732415M23Rik|AI847264	spermatogenesis associated 33	protein-coding	0.140000	0.731343	
mm_155488.1	chrX	73716631	73716831	+	1	NA	NA	NA	134	NM_007435	11666	Mm.365	NM_007435	ENSMUSG00000031378	Abcd1	ALDP|Ald|Aldgh	ATP-binding cassette, sub-family D (ALD), member 1	protein-coding	0.040000	0.651741	
mm_102410.1	chr11	59187653	59187853	-	1	NA	NA	NA	-12	NM_001159410	14923	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	0.015000	0.577114	79(GCCTTTATAGAC,+,0.00),79(GCCTTTATAGAC,-,0.00),81(CTTTATAGACGG,+,0.00)
mm_3762.1	chr1	156067371	156067571	+	1	NA	NA	NA	26610	NM_022329	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.030000	0.467662	
mm_146436.1	chr18	84934449	84934649	+	1	NA	NA	NA	-476	NM_015798	50764	Mm.28369	NM_015798	ENSMUSG00000034391	Fbxo15	AU019763|Fbx15|ecat3	F-box protein 15	protein-coding	0.010000	0.477612	
mm_148140.1	chr18	76943972	76944172	-	1	NA	NA	NA	-43	NM_029826	76987	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	0.090000	0.626866	
mm_65440.1	chr7	25388894	25389094	-	1	NA	NA	NA	1118	NM_001039507	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.015000	0.547264	
mm_112547.1	chr13	12340387	12340587	+	1	NA	NA	NA	245	NM_033268	11472	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	0.070000	0.601990	
mm_143802.1	chr17	83502716	83502916	-	1	NA	NA	NA	11517	NM_009187	20463	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.015000	0.402985	
mm_100239.1	chr11	117241577	117241777	+	1	NA	NA	NA	-24569	NM_001113487	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.015000	0.457711	
mm_51199.1	chr6	71284292	71284492	+	1	NA	NA	NA	12373	NM_145568	57896	Mm.250569	NM_145568	ENSMUSG00000053012	Krcc1	AA792894	lysine-rich coiled-coil 1	protein-coding	0.010000	0.447761	-30(GCTCATATAGTG,+,0.00)
mm_132322.1	chr16	33793978	33794178	+	1	NA	NA	NA	41	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.010000	0.482587	
mm_156217.1	chrX	134717817	134718017	+	1	NA	NA	NA	-21	NM_001166380	78248	Mm.458522	NM_030066	ENSMUSG00000033460	Armcx1	3010033I09Rik|ALEX1	armadillo repeat containing, X-linked 1	protein-coding	0.025000	0.547264	
mm_17254.1	chr2	25815767	25815967	-	1	NA	NA	NA	-31	NM_001039095	71103	Mm.236431	NM_001039095	ENSMUSG00000036401	Glt6d1	4933411C14Rik|GT6m7	glycosyltransferase 6 domain containing 1	protein-coding	0.005000	0.497512	
mm_109557.1	chr12	111781662	111781862	+	1	NA	NA	NA	22894	NM_001025361	16593	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0.030000	0.542289	
mm_134806.1	chr16	24393607	24393807	-	1	NA	NA	NA	-52	NR_037954	68841	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	0.135000	0.800995	
mm_55375.1	chr6	58533527	58533727	-	1	NA	NA	NA	-60749	NM_001166729	626828	Mm.480268	NM_001166729	ENSMUSG00000093379	Vmn1r31	EG626828|Gm6709	vomeronasal 1 receptor 31	protein-coding	0.000000	0.472637	-99(CACCCTTTAAGC,-,0.00)
mm_6627.1	chr1	78196706	78196906	-	1	NA	NA	NA	330	NM_008781	18505	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	0.095000	0.671642	
mm_163326.1	chr12	8345049	8345249	+	1	NA	NA	NA	31716	NM_021429	58240	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.025000	0.567164	
mm_87313.1	chr10	42782438	42782638	+	1	NA	NA	NA	21042	NM_153055	140740	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0.000000	0.328358	
mm_108502.1	chr12	83949963	83950163	+	1	NA	NA	NA	-545	NM_023633	71952	Mm.251483	NM_023633	ENSMUSG00000046791	2410016O06Rik	MAPJD|NO66	RIKEN cDNA 2410016O06 gene	protein-coding	0.010000	0.447761	
mm_110540.1	chr12	55302642	55302842	-	1	NA	NA	NA	105	NM_025373	66132	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	0.045000	0.517413	
mm_85153.1	chr9	96333011	96333211	-	1	NA	NA	NA	31188	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.010000	0.407960	
mm_45849.1	chr5	87699373	87699573	-	1	NA	NA	NA	-48	NM_001286021	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.010000	0.378109	
mm_114052.1	chr13	54335931	54336131	+	1	NA	NA	NA	-35318	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.010000	0.293532	
mm_18518.1	chr2	62646090	62646290	-	1	NA	NA	NA	65	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.065000	0.582090	
mm_28849.1	chr3	96814425	96814625	-	1	NA	NA	NA	-4	NM_018767	54215	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	0.020000	0.532338	
mm_87028.1	chr10	28586651	28586851	+	1	NA	NA	NA	-81609	NM_001305663	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.005000	0.462687	
mm_69652.1	chr7	139660080	139660280	-	1	NA	NA	NA	23635	NM_001302546	212124	Mm.425507	NM_177212	ENSMUSG00000049571	Cfap46	9330101J02Rik|E030019B06Rik|Gm170|Ttc40	cilia and flagella associated protein 46	protein-coding	0.070000	0.572139	
mm_62809.1	chr7	112993802	112994002	+	1	NA	NA	NA	39940	NM_175279	78748	Mm.349943	NM_175279	ENSMUSG00000098132	Rassf10	4632411J06Rik	Ras association (RalGDS/AF-6) domain family (N-terminal) member 10	protein-coding	0.005000	0.542289	
mm_32671.1	chr4	115737682	115737882	+	1	NA	NA	NA	-291	NM_172698	230648	Mm.283565	NM_172698	ENSMUSG00000034210	Efcab14	4732418C07Rik	EF-hand calcium binding domain 14	protein-coding	0.100000	0.701493	
mm_96649.1	chr11	69360549	69360749	+	1	NA	NA	NA	8777	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.030000	0.582090	
mm_49516.1	chr6	29876609	29876809	+	1	NA	NA	NA	17113	NM_001171001	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.000000	0.273632	29(GTTTTTATAGTT,+,0.00)
mm_155576.1	chrX	77844946	77845146	+	1	NA	NA	NA	8454	NM_017471	54192	Mm.8034	NM_017471	ENSMUSG00000000003	Pbsn	PB|Prbs	probasin	protein-coding	0.015000	0.368159	
mm_55861.1	chr6	83456336	83456536	-	1	NA	NA	NA	-44	NM_001347313	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.130000	0.800995	
mm_22827.1	chr3	27241496	27241696	+	1	NA	NA	NA	58592	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.075000	0.597015	
mm_1522.1	chr1	72824472	72824672	+	1	NA	NA	NA	92	NM_008342	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.105000	0.706468	
mm_38277.1	chr4	136886095	136886295	-	1	NA	NA	NA	-18	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.005000	0.562189	
mm_71010.1	chr8	31150227	31150427	+	1	NA	NA	NA	11	NR_103719	234138	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	0.070000	0.472637	
mm_113909.1	chr13	49341486	49341686	+	1	NA	NA	NA	37	NM_001039180	76895	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	bicaudal D homolog 2 (Drosophila)	protein-coding	0.135000	0.751244	
mm_161477.1	chr15	82069977	82070177	+	1	NA	NA	NA	-40	NM_028897	74369	Mm.289351	NM_028897	ENSMUSG00000068117	Mei1	4932408F18Rik|mei1	meiotic double-stranded break formation protein 1	protein-coding	0.130000	0.701493	
mm_157406.1	chrX	38435379	38435579	-	1	NA	NA	NA	20981	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.005000	0.348259	
mm_159179.1	chr2	111368686	111368886	+	1	NA	NA	NA	152	NM_207236	228443	Mm.377244	NM_207236	ENSMUSG00000109322	Olfr1283	GA_x6K02T2Q125-72420217-72421134|MOR248-19	olfactory receptor 1283	protein-coding	0.000000	0.417910	
mm_80160.1	chr9	71069050	71069250	+	1	NA	NA	NA	93483	NM_001271843	64008	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.015000	0.577114	-32(GGGTATTAAAGG,-,0.00)
mm_27392.1	chr3	50886916	50887116	-	1	NA	NA	NA	-337431	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.015000	0.467662	
mm_76893.1	chr8	105704627	105704827	-	1	NA	NA	NA	3080	NM_001286345	56513	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0.030000	0.601990	
mm_121298.1	chr14	105589439	105589639	+	1	NA	NA	NA	-10	NR_102319	380930	Mm.427836	NR_102319		9330188P03Rik	Gm1589|mgt-6	RIKEN cDNA 9330188P03 gene	ncRNA	0.060000	0.482587	
mm_23017.1	chr3	34560536	34560736	+	1	NA	NA	NA	255	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA	0.030000	0.537313	
mm_33291.1	chr4	128902109	128902309	+	1	NA	NA	NA	18069	NM_178110	67525	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0.005000	0.432836	
mm_120305.1	chr14	63140769	63140969	+	1	NA	NA	NA	18407	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.000000	0.398010	3(CTTTTTAGACCA,+,0.00)
mm_113954.1	chr13	51100772	51100972	+	1	NA	NA	NA	-8	NM_001283028	20729	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0.205000	0.860697	
mm_106230.1	chr11	117326958	117327158	-	1	NA	NA	NA	-4657	NM_017380	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.030000	0.577114	
mm_37845.1	chr4	132183233	132183433	-	1	NA	NA	NA	28923	NM_145393	213541	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0.005000	0.383085	
mm_136398.1	chr16	93359443	93359643	-	1	NA	NA	NA	0	NR_040487	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.015000	0.502488	
mm_87393.1	chr10	45289289	45289489	+	1	NA	NA	NA	84	NM_024286	78977	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	0.155000	0.771144	
mm_102320.1	chr11	57507004	57507204	-	1	NA	NA	NA	11540	NM_001168667	67726	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	0.015000	0.477612	
mm_99852.1	chr11	109362795	109362995	+	1	NA	NA	NA	101	NM_010303	14674	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0.150000	0.815920	
mm_28434.1	chr3	90465766	90465966	-	1	NA	NA	NA	0	NM_008727	18160	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.100000	0.721393	
mm_43959.1	chr5	145241219	145241419	+	1	NA	NA	NA	9560	NM_028298	72611	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	0.000000	0.442786	
mm_91172.1	chr10	20724739	20724939	-	1	NA	NA	NA	239	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.020000	0.398010	
mm_167398.1	chr8	95311512	95311712	+	1	NA	NA	NA	14	NM_199455	73407	Mm.472783	NM_028532	ENSMUSG00000090206	Tepp	1700055M20Rik	testis, prostate and placenta expressed	protein-coding	0.015000	0.552239	
mm_118584.1	chr14	20306678	20306878	+	1	NA	NA	NA	12088	NM_026341	67725	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	0.005000	0.303483	-19(TCTTTAAAACTG,+,0.00)
mm_17906.1	chr2	35315179	35315379	-	1	NA	NA	NA	21730	NM_013515	13830	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.015000	0.542289	
mm_108474.1	chr12	83653331	83653531	+	1	NA	NA	NA	21197	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.000000	0.388060	
mm_134257.1	chr16	13730879	13731079	-	1	NA	NA	NA	-495	NM_011987	26565	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	0.030000	0.547264	
mm_138095.1	chr17	34039372	34039572	+	1	NA	NA	NA	334	NM_001317722	12815	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.040000	0.666667	
mm_116519.1	chr13	45777409	45777609	-	1	NA	NA	NA	187482	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.000000	0.388060	
mm_50838.1	chr6	54816758	54816958	+	1	NA	NA	NA	-58	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.175000	0.805970	
mm_15909.1	chr2	165058165	165058365	+	1	NA	NA	NA	2629	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.000000	0.502488	
mm_165863.1	chr4	32652677	32652877	+	1	NA	NA	NA	-4342	NM_001081392	100019	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	0.015000	0.412935	
mm_97633.1	chr11	78959826	78960026	+	1	NA	NA	NA	24998	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.000000	0.542289	
mm_110970.1	chr12	76961356	76961556	-	1	NA	NA	NA	792	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.045000	0.646766	
mm_93952.1	chr10	127262982	127263182	-	1	NA	NA	NA	281	NM_008447	16572	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	0.125000	0.736318	
mm_110771.1	chr12	70316223	70316423	-	1	NA	NA	NA	7818	NR_037248	100526482		NR_037248	ENSMUSG00000078026	Mir466o	Mir4660|mmu-mir-466o	microRNA 466o	ncRNA	0.020000	0.512438	
mm_169512.1	chr14	85733239	85733439	-	1	NA	NA	NA	-512631	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	0.005000	0.368159	
mm_12447.1	chr2	71118009	71118209	+	1	NA	NA	NA	55	NM_028593	73649	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	0.090000	0.696517	
mm_119662.1	chr14	52197415	52197615	+	1	NA	NA	NA	-276	NM_033618	114741	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	0.085000	0.706468	
mm_54491.1	chr6	35509935	35510135	-	1	NA	NA	NA	29853	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.328358	
mm_167376.1	chr8	91801527	91801727	-	1	NA	NA	NA	27	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.080000	0.686567	
mm_28024.1	chr3	83046579	83046779	-	1	NA	NA	NA	3184	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.025000	0.537313	
mm_56878.1	chr6	118987040	118987240	-	1	NA	NA	NA	106982	NR_046053	74363	Mm.399403	NR_046053		4931430N09Rik	-	RIKEN cDNA 4931430N09 gene	ncRNA	0.005000	0.378109	
mm_124749.1	chr15	6629965	6630165	+	1	NA	NA	NA	50218	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.005000	0.298507	10(TCCTATAAATGA,-,0.00)
mm_17333.1	chr2	26516635	26516835	-	1	NA	NA	NA	12808	NR_132655	102639736		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0.005000	0.582090	
mm_125645.1	chr15	62246426	62246626	+	1	NA	NA	NA	-27075	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.005000	0.447761	-28(GCTTATAAAAAC,+,0.00),-28(GCTTATAAAAAC,-,0.00)
mm_132591.1	chr16	38445251	38445451	+	1	NA	NA	NA	7338	NM_007414	11544	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.000000	0.417910	
mm_6069.1	chr1	60902436	60902636	-	1	NA	NA	NA	-6489	NM_009843	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.015000	0.417910	
mm_155660.1	chrX	86191674	86191874	+	1	NA	NA	NA	-1	NM_007430	11614	Mm.5180	NM_007430	ENSMUSG00000025056	Nr0b1	AHX|Ahc|Ahch|DAX-1|Dax1	nuclear receptor subfamily 0, group B, member 1	protein-coding	0.080000	0.621891	
mm_32882.1	chr4	118961506	118961706	+	1	NA	NA	NA	-361	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.005000	0.517413	
mm_50988.1	chr6	63255904	63256104	+	1	NA	NA	NA	-853	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.045000	0.562189	53(CCATTTCTAGGC,+,0.00)
mm_52907.1	chr6	122811413	122811613	+	1	NA	NA	NA	-8671	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.090000	0.676617	-13(CCTCTTAAGGTG,+,0.00)
mm_136905.1	chr17	13016319	13016519	+	1	NA	NA	NA	8580	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.015000	0.368159	38(TTTTTTAAAGGT,+,0.00)
mm_144720.1	chr18	35119735	35119935	+	1	NA	NA	NA	923	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.020000	0.432836	
mm_66976.1	chr7	63929252	63929452	-	1	NA	NA	NA	9563	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.010000	0.427861	
mm_36181.1	chr4	62208559	62208759	-	1	NA	NA	NA	-113	NM_001290350	22696	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0.090000	0.636816	
mm_96546.1	chr11	68853281	68853481	+	1	NA	NA	NA	-250	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.020000	0.457711	
mm_68176.1	chr7	103843062	103843262	-	1	NA	NA	NA	0	NM_008219	15132	Mm.440281	NM_008219	ENSMUSG00000052217	Hbb-bh1	betaH1	hemoglobin Z, beta-like embryonic chain	protein-coding	0.000000	0.502488	
mm_151005.1	chr19	46654844	46655044	+	1	NA	NA	NA	18056	NM_007809	13074	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.015000	0.572139	
mm_60524.1	chr7	44479972	44480172	+	1	NA	NA	NA	-4445	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.497512	
mm_100771.1	chr11	4789647	4789847	-	1	NA	NA	NA	-42969	NM_138948	192650	Mm.207056	NM_138948	ENSMUSG00000009075	Cabp7	-	calcium binding protein 7	protein-coding	0.020000	0.552239	
mm_144162.1	chr18	5688722	5688922	+	1	NA	NA	NA	-96385	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	0.005000	0.378109	
mm_145670.1	chr18	61448156	61448356	+	1	NA	NA	NA	36351	NR_045419	442846	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.010000	0.497512	
mm_28950.1	chr3	100472508	100472708	-	1	NA	NA	NA	16584	NM_001142952	74645	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.040000	0.532338	
mm_140221.1	chr17	83905552	83905752	+	1	NA	NA	NA	-58862	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.020000	0.557214	
mm_58480.1	chr7	3455436	3455636	+	1	NA	NA	NA	30874	NM_133183	54378	Mm.424047	NM_133183	ENSMUSG00000078815	Cacng6	2310033H20Rik	calcium channel, voltage-dependent, gamma subunit 6	protein-coding	0.015000	0.482587	
mm_105182.1	chr11	101894264	101894464	-	1	NA	NA	NA	-10	NM_010791	17285	Mm.3404	NM_010791	ENSMUSG00000001493	Meox1	AI385561|D330041M02Rik|Mox-1|Mox1	mesenchyme homeobox 1	protein-coding	0.015000	0.527363	
mm_18441.1	chr2	60883815	60884015	-	1	NA	NA	NA	-2477	NM_001141931	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.015000	0.532338	
mm_17068.1	chr2	22744513	22744713	-	1	NA	NA	NA	-29714	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.065000	0.731343	
mm_151295.1	chr19	55435277	55435477	+	1	NA	NA	NA	119320	NM_001293686	53611	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.000000	0.363184	86(GGATTTAAAAGA,-,0.00)
mm_125874.1	chr15	75616602	75616802	+	1	NA	NA	NA	18	NM_011759	22701	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0.120000	0.706468	6(GCCTTTAGGCGC,+,0.00)
mm_29770.1	chr3	127240570	127240770	-	1	NA	NA	NA	79365	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.005000	0.318408	
mm_85032.1	chr9	88480164	88480364	-	1	NA	NA	NA	2133	NM_019666	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.000000	0.398010	
mm_93444.1	chr10	109903762	109903962	-	1	NA	NA	NA	96357	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.035000	0.557214	
mm_128062.1	chr15	26743413	26743613	-	1	NA	NA	NA	152051	NM_176959	448987	Mm.253378	NM_176959	ENSMUSG00000043556	Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding	0.005000	0.402985	
mm_138273.1	chr17	34604840	34605040	+	1	NA	NA	NA	-921	NM_001163379	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.030000	0.482587	
mm_92303.1	chr10	75052917	75053117	-	1	NA	NA	NA	-7879	NM_001081412	110279	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.020000	0.552239	
mm_106568.1	chr11	120643630	120643830	-	1	NA	NA	NA	-60	NM_144795	209027	Mm.127731	NM_144795	ENSMUSG00000025140	Pycr1	-	pyrroline-5-carboxylate reductase 1	protein-coding	0.060000	0.616915	
mm_75924.1	chr8	71498149	71498349	-	1	NA	NA	NA	10146	NM_032544	70359	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	0.035000	0.641791	
mm_34383.1	chr4	144919900	144920100	+	1	NA	NA	NA	26863	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.040000	0.582090	
mm_79250.1	chr9	50603830	50604030	+	1	NA	NA	NA	29	NM_013897	30057	Mm.335149	NM_013897	ENSMUSG00000039016	Timm8b	Tim8b	translocase of inner mitochondrial membrane 8B	protein-coding	0.115000	0.626866	
mm_7811.1	chr1	131733440	131733640	-	1	NA	NA	NA	-10482	NM_177243	320718	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	0.010000	0.587065	
mm_105199.1	chr11	102097428	102097628	-	1	NA	NA	NA	3772	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.055000	0.552239	
mm_157182.1	chrX	10117537	10117737	-	1	NA	NA	NA	24	NM_016911	51795	Mm.1927	NM_016911	ENSMUSG00000090084	Srpx	drs|drs-1|drs-2|mDRS-1|mDRS-2	sushi-repeat-containing protein	protein-coding	0.025000	0.616915	
mm_43033.1	chr5	123973586	123973786	+	1	NA	NA	NA	58	NM_145070	29816	Mm.149954	NM_145070	ENSMUSG00000000915	Hip1r	AA410023|mKIAA0655	huntingtin interacting protein 1 related	protein-coding	0.150000	0.741294	
mm_106543.1	chr11	120579079	120579279	-	1	NA	NA	NA	2441	NM_133796	192662	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.025000	0.592040	
mm_66917.1	chr7	60047860	60048060	-	1	NA	NA	NA	-42804	NM_033174	84704	Mm.274995	NM_033174	ENSMUSG00000000948	Snurf	2410045I01Rik|Snrpn	SNRPN upstream reading frame	protein-coding	0.015000	0.522388	
mm_170690.1	chr2	132099724	132099924	+	1	NA	NA	NA	45284	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.015000	0.432836	-18(GGTTTTAAAAAC,-,0.00)
mm_152169.1	chr19	7322986	7323186	-	1	NA	NA	NA	18774	NM_001080389	13728	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.010000	0.417910	
mm_31176.1	chr4	43493288	43493488	+	1	NA	NA	NA	23	NM_001037913	622404	Mm.289109	NM_001037913	ENSMUSG00000028461	Ccdc107	-	coiled-coil domain containing 107	protein-coding	0.090000	0.671642	
mm_136080.1	chr16	84835203	84835403	-	1	NA	NA	NA	179	NM_008065	14390	Mm.18974	NM_008065	ENSMUSG00000008976	Gabpa	GABPalpha	GA repeat binding protein, alpha	protein-coding	0.090000	0.626866	
mm_61060.1	chr7	49959840	49960040	+	1	NA	NA	NA	-15410	NM_001037906	338352	Mm.383528	NM_001037906	ENSMUSG00000055409	Nell1	B230343H07Rik|l7R6	NEL-like 1	protein-coding	0.010000	0.442786	
mm_42242.1	chr5	113828280	113828480	+	1	NA	NA	NA	2121	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.015000	0.557214	
mm_25737.1	chr3	122895277	122895477	+	1	NA	NA	NA	305	NM_007980	14079	Mm.28398	NM_007980	ENSMUSG00000023057	Fabp2	Fabpi|I-FABP	fatty acid binding protein 2, intestinal	protein-coding	0.040000	0.437811	
mm_42827.1	chr5	122100851	122101051	+	1	NA	NA	NA	-29	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.015000	0.572139	
mm_79125.1	chr9	46913502	46913702	+	1	NA	NA	NA	-1	NR_015605	73040	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA	0.010000	0.542289	
mm_37391.1	chr4	121078646	121078846	-	1	NA	NA	NA	19497	NM_172700	230709	Mm.34399	NM_172700	ENSMUSG00000043207	Zmpste24	A530043O15Rik|D030046F19|FACE1|Face-1|MADB|STE24|Ste24p	zinc metallopeptidase, STE24	protein-coding	0.005000	0.412935	
mm_37996.1	chr4	133666575	133666775	-	1	NA	NA	NA	5972	NM_001145955	230801	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.005000	0.482587	
mm_45242.1	chr5	54018531	54018731	-	1	NA	NA	NA	20108	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.005000	0.343284	
mm_46832.1	chr5	113221179	113221379	-	1	NA	NA	NA	-5630	NM_001033428	333048	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	0.195000	0.855721	
mm_116549.1	chr13	46502691	46502891	-	1	NA	NA	NA	888	NM_026056	67252	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding	0.025000	0.507463	
mm_47838.1	chr5	134314348	134314548	-	1	NA	NA	NA	312	NM_001080746	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.110000	0.741294	
mm_47072.1	chr5	116545765	116545965	-	1	NA	NA	NA	45952	NM_026886	68955	Mm.146779	NM_026886	ENSMUSG00000063919	Srrm4	1500001A10Rik|B230202K19Rik|bv|mKIAA1853|nSR100	serine/arginine repetitive matrix 4	protein-coding	0.030000	0.472637	
mm_125647.1	chr15	62264316	62264516	+	1	NA	NA	NA	-44965	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.000000	0.398010	
mm_27027.1	chr3	26119322	26119522	-	1	NA	NA	NA	33885	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.010000	0.442786	
mm_146409.1	chr18	84088028	84088228	+	1	NA	NA	NA	-30	NM_146090	225791	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.145000	0.781095	
mm_48452.1	chr5	140759851	140760051	-	1	NA	NA	NA	35824	NM_173405	231842	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.045000	0.626866	
mm_5388.1	chr1	31143687	31143887	-	1	NA	NA	NA	-32648	NM_153601	266744	Mm.389093	NM_153601	ENSMUSG00000050217	Lgsn	Gluld1|Lgs|lengsin	lengsin, lens protein with glutamine synthetase domain	protein-coding	0.005000	0.472637	
mm_58285.1	chr6	145863122	145863322	-	1	NA	NA	NA	2198	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.145000	0.736318	
mm_91316.1	chr10	24927624	24927824	-	1	NA	NA	NA	-254	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.005000	0.547264	
mm_79299.1	chr9	51765322	51765522	+	1	NA	NA	NA	70	NM_175535	244867	Mm.400352	NM_175535	ENSMUSG00000053199	Arhgap20	6530403F17Rik|A530023E23Rik|RARhoGAP|mKIAA1391	Rho GTPase activating protein 20	protein-coding	0.160000	0.746269	
mm_62721.1	chr7	110773314	110773514	+	1	NA	NA	NA	810	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.005000	0.532338	
mm_12088.1	chr2	60222970	60223170	+	1	NA	NA	NA	13134	NM_020575	57438	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.000000	0.308458	
mm_46470.1	chr5	105124899	105125099	-	1	NA	NA	NA	14553	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.621891	
mm_124972.1	chr15	19632374	19632574	+	1	NA	NA	NA	812145	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0.010000	0.452736	
mm_137069.1	chr17	20945244	20945444	+	1	NA	NA	NA	-110	NM_016891	51792	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	0.100000	0.621891	
mm_169401.1	chr14	49885024	49885224	-	1	NA	NA	NA	16817	NM_146494	258487	Mm.270514	NM_146494	ENSMUSG00000048933	Olfr722	MOR241-3	olfactory receptor 722	protein-coding	0.035000	0.412935	
mm_111671.1	chr12	103338168	103338368	-	1	NA	NA	NA	17733	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.025000	0.567164	
mm_50584.1	chr6	49056560	49056760	+	1	NA	NA	NA	-17135	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.010000	0.492537	
mm_72386.1	chr8	81731746	81731946	+	1	NA	NA	NA	389284	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.005000	0.393035	
mm_133641.1	chr16	91729355	91729555	+	1	NA	NA	NA	84	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.150000	0.761194	
mm_148985.1	chr19	8593084	8593284	+	1	NA	NA	NA	2	NM_001164635	19879	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	0.010000	0.522388	-35(CCTTATATAAGG,+,0.00),-35(CCTTATATAAGG,-,0.00)
mm_153068.1	chr19	32223703	32223903	-	1	NA	NA	NA	-12790	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.010000	0.477612	86(GGCTAGTAAAGG,-,0.00)
mm_19601.1	chr2	102400950	102401150	-	1	NA	NA	NA	-150	NM_020267	80985	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	0.125000	0.706468	
mm_138278.1	chr17	34605819	34606019	+	1	NA	NA	NA	58	NM_001163379	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.055000	0.691542	
mm_159761.1	chr5	92253302	92253502	-	1	NA	NA	NA	-243	NM_011148	19023	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	0.020000	0.522388	
mm_107669.1	chr12	53248349	53248549	+	1	NA	NA	NA	-228	NM_013780	27386	Mm.247044	NM_013780	ENSMUSG00000021010	Npas3	4930423H22Rik|bHLHe12	neuronal PAS domain protein 3	protein-coding	0.125000	0.766169	
mm_60655.1	chr7	44896056	44896256	+	1	NA	NA	NA	77	NM_027376	70300	Mm.276298	NM_027376	ENSMUSG00000011658	Fuz	2600013E07Rik|b2b1273Clo	fuzzy planar cell polarity protein	protein-coding	0.060000	0.597015	
mm_5722.1	chr1	44102288	44102488	-	1	NA	NA	NA	0	NM_029368	75623	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0.160000	0.736318	
mm_52979.1	chr6	123262095	123262295	+	1	NA	NA	NA	88	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.000000	0.353234	
mm_89336.1	chr10	87933743	87933943	+	1	NA	NA	NA	-32828	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.318408	
mm_159979.1	chr6	113458547	113458747	+	1	NA	NA	NA	163	NM_145826	57890	Mm.131781	NM_145826	ENSMUSG00000043088	Il17re	AA589509|IL-17RE|Il25r	interleukin 17 receptor E	protein-coding	0.000000	0.527363	
mm_49281.1	chr6	17637765	17637965	+	1	NA	NA	NA	767	NM_007604	12343	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.025000	0.472637	
mm_169319.1	chr14	113293169	113293369	+	1	NA	NA	NA	1271839	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA	0.035000	0.472637	-92(CTCCTTAAGAGG,-,0.00)
mm_36977.1	chr4	109531119	109531319	-	1	NA	NA	NA	-15	NM_001199090	67646	Mm.45820	NM_026291	ENSMUSG00000060491	4930522H14Rik	1700007J23Rik	RIKEN cDNA 4930522H14 gene	protein-coding	0.000000	0.417910	-58(GCTTTTATGGCA,+,0.00)
mm_87238.1	chr10	40883401	40883601	+	1	NA	NA	NA	-33	NM_031877	83767	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	0.055000	0.631841	
mm_6193.1	chr1	65159292	65159492	-	1	NA	NA	NA	19750	NM_010497	15926	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.010000	0.303483	
mm_103573.1	chr11	77923279	77923479	-	1	NA	NA	NA	5909	NR_033549	791423	Mm.483498	NR_033549	ENSMUSG00000055045	Gm11190	OTTMUSG00000000071	predicted gene 11190	ncRNA	0.005000	0.492537	-27(GGCTATAAAATG,-,0.00)
mm_61234.1	chr7	64753185	64753385	+	1	NA	NA	NA	119755	NM_023239	66647	Mm.19944	NM_023239	ENSMUSG00000070520	Ndnl2	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Nsmce3|mage-g1	necdin-like 2	protein-coding	0.010000	0.462687	
mm_145345.1	chr18	56470943	56471143	+	1	NA	NA	NA	38911	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.010000	0.442786	
mm_59943.1	chr7	30425180	30425380	+	1	NA	NA	NA	1976	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.020000	0.592040	
mm_122119.1	chr14	31014258	31014458	-	1	NA	NA	NA	-7	NR_028531	100217431		NR_028531		Snord69	MBII-210	small nucleolar RNA, C/D box 69	snoRNA	0.000000	0.388060	-81(TGCCATATATGC,-,0.00)
mm_64485.1	chr7	143067277	143067477	+	1	NA	NA	NA	-1991	NM_020285	56844	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.010000	0.527363	
mm_152192.1	chr19	7482239	7482439	-	1	NA	NA	NA	952	NM_001271486	20168	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0.010000	0.383085	
mm_66730.1	chr7	46348920	46349120	-	1	NA	NA	NA	-22383	NR_131190	105447647		NR_131190		Munc	DRReRNA	MyoD upstream noncoding	ncRNA	0.115000	0.746269	
mm_34194.1	chr4	140702088	140702288	+	1	NA	NA	NA	715	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.150000	0.796020	
mm_118330.1	chr13	113663576	113663776	-	1	NA	NA	NA	0	NM_019960	56534	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	0.035000	0.542289	-14(GGCTATAAATAG,-,0.00),-12(CTATAAATAGCC,+,0.00)
mm_39590.1	chr5	23496308	23496508	+	1	NA	NA	NA	61979	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.010000	0.393035	-68(GCATTTATAGGC,+,0.00),-59(GGCTATATAAAC,-,0.00)
mm_128521.1	chr15	54278327	54278527	-	1	NA	NA	NA	57	NM_008764	18383	Mm.15383	NM_008764	ENSMUSG00000063727	Tnfrsf11b	OCIF|Opg|TR1	tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	protein-coding	0.035000	0.527363	
mm_74304.1	chr8	126422468	126422668	+	1	NA	NA	NA	67	NM_174987	67892	Mm.31946	NM_174987	ENSMUSG00000051671	Coa6	1810063B05Rik|AI447995	cytochrome c oxidase assembly factor 6	protein-coding	0.115000	0.661692	
mm_93214.1	chr10	94944831	94945031	-	1	NA	NA	NA	-353	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.100000	0.696517	
mm_49730.1	chr6	34709430	34709630	+	1	NA	NA	NA	86	NM_145575	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.030000	0.597015	
mm_164864.1	chr18	56075345	56075545	-	1	NA	NA	NA	-356687	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.005000	0.373134	
mm_131181.1	chr16	7149814	7150014	+	1	NA	NA	NA	80079	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.015000	0.393035	
mm_111686.1	chr12	103443563	103443763	-	1	NA	NA	NA	17	NM_029803	76933	Mm.271275	NM_029803	ENSMUSG00000079017	Ifi27l2a	2310061N23Rik|Ifi27|Isg12|Isg12(b1)	interferon, alpha-inducible protein 27 like 2A	protein-coding	0.015000	0.547264	
mm_134344.1	chr16	16560277	16560477	-	1	NA	NA	NA	-158	NM_139232	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.010000	0.482587	-34(GTTTATATAGCC,+,0.00)
mm_160370.1	chr8	33386309	33386509	+	1	NA	NA	NA	84	NM_001098233	75029	Mm.159402	NM_152821	ENSMUSG00000049184	Purg	4930486B15Rik	purine-rich element binding protein G	protein-coding	0.055000	0.631841	
mm_34434.1	chr4	147234226	147234426	+	1	NA	NA	NA	58460	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.005000	0.487562	
mm_171467.1	chr4	145774536	145774736	+	1	NA	NA	NA	-6907	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.100000	0.741294	
mm_170428.1	chr18	75000404	75000604	+	1	NA	NA	NA	27	NM_001002239	319195	Mm.276337	NM_001002239	ENSMUSG00000062328	Rpl17	-	ribosomal protein L17	protein-coding	0.090000	0.601990	
mm_37974.1	chr4	133545859	133546059	-	1	NA	NA	NA	68	NM_010948	18221	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nudC nuclear distribution protein	protein-coding	0.140000	0.741294	
mm_102134.1	chr11	53430709	53430909	-	1	NA	NA	NA	22	NM_025352	22272	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	0.080000	0.572139	
mm_149193.1	chr19	9954601	9954801	+	1	NA	NA	NA	-25899	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.015000	0.532338	-44(GCCCTTTTAGGG,-,0.00),-42(CCTTTTAGGGGC,+,0.00)
mm_127463.1	chr15	101272173	101272373	+	1	NA	NA	NA	5427	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.030000	0.572139	
mm_66162.1	chr7	31156139	31156339	-	1	NA	NA	NA	-5189	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.035000	0.592040	
mm_52566.1	chr6	116264147	116264347	+	1	NA	NA	NA	28	NM_001290338	67492	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0.185000	0.781095	
mm_137191.1	chr17	23822358	23822558	+	1	NA	NA	NA	6651	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.015000	0.577114	-15(GGCTATTAGAGA,-,0.00)
mm_40815.1	chr5	72203230	72203430	+	1	NA	NA	NA	1	NR_003966	231287	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.080000	0.666667	
mm_169347.1	chr14	19861165	19861365	-	1	NA	NA	NA	22340	NR_105025	52512	Mm.483998	NR_105025		D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.000000	0.462687	
mm_5815.1	chr1	52658187	52658387	-	1	NA	NA	NA	27582	NM_001142647	227094	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	0.005000	0.547264	
mm_96828.1	chr11	69998278	69998478	+	1	NA	NA	NA	916	NM_001291127	78246	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.030000	0.532338	-88(CTCCTTTTAAGG,-,0.00),-86(CCTTTTAAGGAA,+,0.00)
mm_35796.1	chr4	46537492	46537692	-	1	NA	NA	NA	-1451	NM_029077	74735	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	0.000000	0.318408	
mm_105007.1	chr11	100377031	100377231	-	1	NA	NA	NA	20659	NM_010593	16480	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0.025000	0.537313	
mm_86016.1	chr9	112234862	112235062	-	1	NA	NA	NA	-121	NM_001177619	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.030000	0.616915	
mm_132365.1	chr16	34784781	34784981	+	1	NA	NA	NA	-69	NM_139300	107589	Mm.33360	NM_139300	ENSMUSG00000022836	Mylk	9530072E15Rik|A930019C19Rik|AW489456|KRP|MLCK108|MLCK210|Mlck|nmMlck|smMLCK	myosin, light polypeptide kinase	protein-coding	0.020000	0.582090	
mm_43816.1	chr5	142920905	142921105	+	1	NA	NA	NA	-14251	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.020000	0.592040	
mm_136567.1	chr17	3326581	3326781	+	1	NA	NA	NA	108	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.095000	0.646766	
mm_34221.1	chr4	140986809	140987009	+	1	NA	NA	NA	36	NM_001164366	74772	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.140000	0.761194	
mm_160958.1	chr11	98478148	98478348	-	1	NA	NA	NA	31414	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.010000	0.388060	
mm_105684.1	chr11	107716451	107716651	-	1	NA	NA	NA	-75	NM_007582	12299	Mm.57093	NM_007582	ENSMUSG00000020722	Cacng1	-	calcium channel, voltage-dependent, gamma subunit 1	protein-coding	0.025000	0.572139	
mm_2201.1	chr1	89580064	89580264	+	1	NA	NA	NA	103728	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.165000	0.776119	
mm_94174.1	chr10	128882878	128883078	-	1	NA	NA	NA	8740	NM_010272	14561	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	0.000000	0.422886	
mm_10509.1	chr2	16356183	16356383	+	1	NA	NA	NA	-21	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.075000	0.666667	
mm_11951.1	chr2	52967582	52967782	+	1	NA	NA	NA	109814	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.015000	0.487562	
mm_23880.1	chr3	83030915	83031115	+	1	NA	NA	NA	4862	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.020000	0.487562	14(GTTTTAAGAGCC,+,0.00)
mm_154771.1	chrX	12652140	12652340	+	1	NA	NA	NA	357	NM_001101484	245347	Mm.327568	NM_001101484		Gm4984	AI428901|EG245347	predicted pseudogene 4984	protein-coding	0.065000	0.572139	-64(TCCTTTATGGCA,+,0.00)
mm_230.1	chr1	17727317	17727517	+	1	NA	NA	NA	0	NM_031402	83691	Mm.289625	NM_031402	ENSMUSG00000025776	Crispld1	Cocoacrisp|Lcrisp1	cysteine-rich secretory protein LCCL domain containing 1	protein-coding	0.040000	0.621891	
mm_107782.1	chr12	61524445	61524645	+	1	NA	NA	NA	1378	NM_001310586	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.105000	0.666667	
mm_46289.1	chr5	100373417	100373617	-	1	NA	NA	NA	42717	NM_026969	69162	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	0.015000	0.572139	
mm_118634.1	chr14	21313373	21313573	+	1	NA	NA	NA	-186297	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.000000	0.318408	
mm_71630.1	chr8	57455910	57456110	+	1	NA	NA	NA	87	NM_009136	20284	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.005000	0.552239	
mm_169255.1	chr1	37847153	37847353	-	1	NA	NA	NA	8120	NR_110976	211484	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	0.010000	0.442786	
mm_14350.1	chr2	129601428	129601628	+	1	NA	NA	NA	8359	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.000000	0.557214	
mm_119031.1	chr14	30479553	30479753	+	1	NA	NA	NA	88	NM_133761	75901	Mm.28733	NM_133761	ENSMUSG00000021962	Dcp1a	1110066A22Rik|4930568L04Rik|AU019772|D14Ertd817e|Mitc1|SMIF	decapping mRNA 1A	protein-coding	0.055000	0.611940	
mm_101791.1	chr11	46087053	46087253	-	1	NA	NA	NA	-15117	NR_106177	102465996		NR_106177	ENSMUSG00000098942	Mir8100	Gm27638|mmu-mir-8100	microRNA 8100	ncRNA	0.005000	0.517413	
mm_144439.1	chr18	21651358	21651558	+	1	NA	NA	NA	-107	NM_001271580	74644	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding	0.045000	0.636816	
mm_72258.1	chr8	75096912	75097112	+	1	NA	NA	NA	3394	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.035000	0.611940	
mm_107183.1	chr12	25039999	25040199	+	1	NA	NA	NA	55993	NM_010496	15902	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.000000	0.373134	33(CAGTTTTAAAGA,-,0.00)
mm_135789.1	chr16	57163687	57163887	-	1	NA	NA	NA	3545	NM_023175	52633	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.000000	0.328358	
mm_103179.1	chr11	70459894	70460094	-	1	NA	NA	NA	-10	NM_023158	66102	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.035000	0.552239	
mm_31583.1	chr4	57782097	57782297	+	1	NA	NA	NA	-63051	NM_009649	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.085000	0.721393	
mm_112835.1	chr13	20825740	20825940	+	1	NA	NA	NA	31727	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.323383	
mm_122809.1	chr14	54577433	54577633	-	1	NA	NA	NA	128	NM_010590	16475	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	0.120000	0.721393	
mm_144043.1	chr17	90375928	90376128	-	1	NA	NA	NA	79852	NM_001346958	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.000000	0.373134	
mm_87750.1	chr10	60267150	60267350	+	1	NA	NA	NA	-10378	NM_001146123	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.005000	0.467662	
mm_52260.1	chr6	108213144	108213344	+	1	NA	NA	NA	148	NM_010585	16438	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|ENSMUSG00000072853|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0.060000	0.656716	
mm_107265.1	chr12	29528325	29528525	+	1	NA	NA	NA	41	NM_008666	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.035000	0.507463	
mm_122342.1	chr14	37135191	37135391	-	1	NA	NA	NA	31	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.095000	0.621891	
mm_3642.1	chr1	152824656	152824856	+	1	NA	NA	NA	24603	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.005000	0.447761	
mm_23592.1	chr3	64949193	64949393	+	1	NA	NA	NA	-104550	NR_003962	319210	Mm.246646	NM_175670	ENSMUSG00000097538	Vmn2r-ps11	4930518C23Rik	vomeronasal 2, receptor, pseudogene 11	pseudo	0.025000	0.522388	
mm_90626.1	chr10	128459168	128459368	+	1	NA	NA	NA	32	NM_001114097	68094	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	0.160000	0.810945	
mm_4626.1	chr1	179546377	179546577	+	1	NA	NA	NA	-52	NM_146105	226744	Mm.87662	NM_146105	ENSMUSG00000038949	Cnst	9630058J23Rik	consortin, connexin sorting protein	protein-coding	0.125000	0.721393	
mm_3549.1	chr1	150407439	150407639	+	1	NA	NA	NA	-14484	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.025000	0.467662	
mm_6397.1	chr1	72860934	72861134	-	1	NA	NA	NA	13831	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.000000	0.477612	
mm_149905.1	chr19	25610159	25610359	+	1	NA	NA	NA	-278	NM_177360	240590	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	0.080000	0.731343	
mm_79724.1	chr9	61946901	61947101	+	1	NA	NA	NA	-202	NM_024245	71819	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.035000	0.512438	
mm_166685.1	chr6	99774920	99775120	+	1	NA	NA	NA	-48628	NM_001170419	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.045000	0.567164	
mm_158031.1	chrX	97376401	97376601	-	1	NA	NA	NA	708	NM_001161432	245527	Mm.189270	NM_175540	ENSMUSG00000034457	Eda2r	9430060M22Rik|TNFRSF27|Xedar	ectodysplasin A2 receptor	protein-coding	0.035000	0.552239	
mm_87855.1	chr10	61175092	61175292	+	1	NA	NA	NA	-70	NM_001017409	65971	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.025000	0.537313	
mm_150301.1	chr19	34562934	34563134	+	1	NA	NA	NA	12340	NM_008332	15958	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0.010000	0.323383	64(CTGCTTAAAAGA,-,0.00)
mm_117632.1	chr13	92131758	92131958	-	1	NA	NA	NA	-143816	NM_009027	19418	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0.115000	0.651741	-57(CCCTTTAAATCG,+,0.00)
mm_14162.1	chr2	126606336	126606536	+	1	NA	NA	NA	12242	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.030000	0.567164	
mm_25009.1	chr3	97690734	97690934	+	1	NA	NA	NA	-272	NR_106084	102466229		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	0.025000	0.597015	-74(TCCTTTAAGGAC,+,0.00),-73(CCTTTAAGGACC,+,0.00)
mm_143438.1	chr17	70852180	70852380	-	1	NA	NA	NA	-546	NM_001164075	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.035000	0.437811	
mm_35026.1	chr4	4016432	4016632	-	1	NA	NA	NA	3131	NM_181989	242285	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	0.010000	0.437811	83(TTGCTTTAAAGG,-,0.00),85(GCTTTAAAGGTG,+,0.00)
mm_33946.1	chr4	137277488	137277688	+	1	NA	NA	NA	-47	NM_009523	22417	Mm.20355	NM_009523	ENSMUSG00000036856	Wnt4	Wnt-4	wingless-type MMTV integration site family, member 4	protein-coding	0.175000	0.850746	
mm_88919.1	chr10	81183148	81183348	+	1	NA	NA	NA	-15	NM_001190473	13144	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.060000	0.597015	
mm_19262.1	chr2	84816028	84816228	-	1	NA	NA	NA	6524	NM_024230	68678	Mm.33452	NM_024230	ENSMUSG00000027077	Smtnl1	1110030K22Rik|CHASM	smoothelin-like 1	protein-coding	0.025000	0.537313	
mm_105749.1	chr11	109472486	109472686	-	1	NA	NA	NA	643	NM_134038	104681	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.075000	0.611940	-85(TACCTTAAAGGG,-,0.00),-83(CCTTAAAGGGTG,+,0.00)
mm_152613.1	chr19	11966050	11966250	-	1	NA	NA	NA	306	NM_001033174	76303	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.145000	0.791045	
mm_59362.1	chr7	25687411	25687611	+	1	NA	NA	NA	509	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.070000	0.691542	
mm_37295.1	chr4	119189876	119190076	-	1	NA	NA	NA	35	NM_013848	27028	Mm.290753	NM_013848	ENSMUSG00000028644	Ermap	AA409279|AI666418	erythroblast membrane-associated protein	protein-coding	0.020000	0.522388	-51(GTTTATAGGGAC,+,0.00)
mm_137637.1	chr17	28334846	28335046	+	1	NA	NA	NA	6475	NM_011287	19896	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.020000	0.611940	
mm_103738.1	chr11	80080814	80081014	-	1	NA	NA	NA	77	NM_001277106	54394	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.150000	0.751244	
mm_90458.1	chr10	127739454	127739654	+	1	NA	NA	NA	16	NM_198035	320080	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	0.185000	0.855721	
mm_66139.1	chr7	31115168	31115368	-	1	NA	NA	NA	58	NM_008281	15451	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0.050000	0.731343	
mm_104589.1	chr11	97041230	97041430	-	1	NA	NA	NA	39	NM_027026	69297	Mm.250465	NM_027026	ENSMUSG00000020878	Lrrc46	1700006D24Rik	leucine rich repeat containing 46	protein-coding	0.050000	0.527363	13(GGCCAGTAAAGC,-,0.00)
mm_67996.1	chr7	100928514	100928714	-	1	NA	NA	NA	3547	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.015000	0.616915	
mm_123601.1	chr14	67933337	67933537	-	1	NA	NA	NA	135	NM_177780	68813	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0.185000	0.761194	
mm_79935.1	chr9	65890251	65890451	+	1	NA	NA	NA	28	NM_026515	68026	Mm.351273	NM_026515	ENSMUSG00000040204	Pclaf	2810417H13Rik|AA409629|Ns5apt9|Ns5atp9|PAF15|Paf|mKIAA0101|p15(PAF)	PCNA clamp associated factor	protein-coding	0.060000	0.497512	-20(CCATTTAAACGG,+,0.00)
mm_465.1	chr1	36332596	36332796	+	1	NA	NA	NA	16062	NR_105863	102465541		NR_105863	ENSMUSG00000098680	Mir6898	Gm27816|mmu-mir-6898	microRNA 6898	ncRNA	0.015000	0.437811	
mm_130004.1	chr15	86214216	86214416	-	1	NA	NA	NA	-143	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.115000	0.651741	
mm_117519.1	chr13	81238800	81239000	-	1	NA	NA	NA	274826	NR_015587	319983	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.025000	0.527363	
mm_69931.1	chr7	142045714	142045914	-	1	NA	NA	NA	15039	NM_001347560	101513	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	0.000000	0.338308	
mm_99309.1	chr11	101377077	101377277	+	1	NA	NA	NA	9461	NM_008061	14377	Mm.18064	NM_008061	ENSMUSG00000078650	G6pc	AW107337|G6Pase|G6pt|Glc-6-Pase	glucose-6-phosphatase, catalytic	protein-coding	0.025000	0.437811	
mm_140281.1	chr17	85027866	85028066	+	1	NA	NA	NA	-381	NM_009205	20532	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	0.015000	0.417910	
mm_172139.1	chr6	36089071	36089271	-	1	NA	NA	NA	-298913	NM_203491	243764	Mm.448632	NM_203491	ENSMUSG00000045613	Chrm2	AChR-M2|Chrm-2|M2	cholinergic receptor, muscarinic 2, cardiac	protein-coding	0.015000	0.492537	
mm_18281.1	chr2	52455611	52455811	-	1	NA	NA	NA	-30837	NM_182994	75423	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.005000	0.422886	
mm_69525.1	chr7	135651891	135652091	-	1	NA	NA	NA	92	NM_001316681	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.020000	0.592040	-99(CCTTAAAGGCAC,+,0.00)
mm_70406.1	chr8	11351954	11352154	+	1	NA	NA	NA	-39228	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.015000	0.422886	
mm_82508.1	chr9	20492601	20492801	-	1	NA	NA	NA	45	NM_146221	235028	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	0.095000	0.636816	
mm_97480.1	chr11	78324194	78324394	+	1	NA	NA	NA	96	NM_009657	11676	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0.010000	0.527363	
mm_27254.1	chr3	37125856	37126056	-	1	NA	NA	NA	-2	NM_008366	16183	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	0.010000	0.437811	
mm_42380.1	chr5	114932715	114932915	+	1	NA	NA	NA	-9387	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.030000	0.601990	
mm_56608.1	chr6	112488827	112489027	-	1	NA	NA	NA	881	NM_001081147	18430	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding	0.040000	0.542289	
mm_88791.1	chr10	80622618	80622818	+	1	NA	NA	NA	-62	NM_134002	103236	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.195000	0.776119	
mm_115258.1	chr13	110400495	110400695	+	1	NA	NA	NA	5551	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.005000	0.412935	17(CTGTTTAAAGGC,-,0.00)
mm_74783.1	chr8	22039539	22039739	-	1	NA	NA	NA	20435	NM_007511	11979	Mm.87854	NM_007511	ENSMUSG00000006567	Atp7b	Atp7a|WND|tx	ATPase, Cu++ transporting, beta polypeptide	protein-coding	0.035000	0.611940	
mm_113114.1	chr13	24433972	24434172	+	1	NA	NA	NA	18950	NM_001284520	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.000000	0.358209	
mm_4319.1	chr1	171851760	171851960	+	1	NA	NA	NA	12163	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.388060	77(GCTTTTATAAAA,+,0.00)
mm_92639.1	chr10	80348262	80348462	-	1	NA	NA	NA	86	NM_001285435	66548	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0.080000	0.626866	
mm_133679.1	chr16	92301195	92301395	+	1	NA	NA	NA	-8	NM_138743	68936	Mm.21698	NM_138743	ENSMUSG00000051989	Smim11	1190017O12Rik|C21orf51|Fam165b|Smim11a	small integral membrane protein 11	protein-coding	0.075000	0.577114	
mm_143035.1	chr17	56626783	56626983	-	1	NA	NA	NA	20	NM_028782	74142	Mm.329136	NM_028782	ENSMUSG00000041168	Lonp1	1200017E13Rik|LON|Prss15	lon peptidase 1, mitochondrial	protein-coding	0.125000	0.681592	
mm_153837.1	chr19	46326955	46327155	-	1	NA	NA	NA	101	NM_028627	73728	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.090000	0.606965	
mm_148541.1	chr19	4618341	4618541	+	1	NA	NA	NA	-2774	NM_153388	225875	Mm.329675	NM_153388	ENSMUSG00000045045	Lrfn4	BC023156|Salm3	leucine rich repeat and fibronectin type III domain containing 4	protein-coding	0.065000	0.611940	
mm_42329.1	chr5	114901859	114902059	+	1	NA	NA	NA	5025	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.010000	0.457711	
mm_111874.1	chr12	108003504	108003704	-	1	NA	NA	NA	-190	NM_021399	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.035000	0.462687	
mm_164309.1	chr15	103897387	103897587	-	1	NA	NA	NA	1813	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.010000	0.417910	
mm_95041.1	chr11	32277199	32277399	+	1	NA	NA	NA	699	NM_010405	15126	Mm.141758	NM_010405	ENSMUSG00000055609	Hba-x	AI450015|Hbz	hemoglobin X, alpha-like embryonic chain in Hba complex	protein-coding	0.025000	0.462687	
mm_64494.1	chr7	143458614	143458814	+	1	NA	NA	NA	2336	NM_009876	12577	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.020000	0.303483	
mm_19658.1	chr2	102968447	102968647	-	1	NA	NA	NA	-66882	NM_001039150	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.005000	0.417910	
mm_134039.1	chr16	5089688	5089888	-	1	NA	NA	NA	39720	NM_026666	170644	Mm.66356	NM_026666	ENSMUSG00000039473	Ubn1	1110029L11Rik|2610108L02Rik|AA673476|AW124741	ubinuclein 1	protein-coding	0.010000	0.497512	
mm_137576.1	chr17	27907761	27907961	+	1	NA	NA	NA	-137	NM_026836	68776	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|28kDa|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	0.060000	0.467662	
mm_144870.1	chr18	36735047	36735247	+	1	NA	NA	NA	77	NM_028036	71983	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	0.090000	0.631841	
mm_123784.1	chr14	70331419	70331619	-	1	NA	NA	NA	16914	NM_001135152	213053	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0.015000	0.497512	
mm_32051.1	chr4	97581871	97582071	+	1	NA	NA	NA	28	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.035000	0.482587	
mm_162079.1	chrX	26050941	26051141	-	1	NA	NA	NA	0	NM_001025607	382275	Mm.370361	NM_001025607	ENSMUSG00000079655	Gm5168	EG382275	predicted gene 5168	protein-coding	0.015000	0.477612	
mm_155817.1	chrX	100524776	100524976	+	1	NA	NA	NA	38	NM_001114084	668257	Mm.95646	NM_001114084	ENSMUSG00000067597	Dgat2l6	9930021F22Rik	diacylglycerol O-acyltransferase 2-like 6	protein-coding	0.020000	0.527363	
mm_111941.1	chr12	108894043	108894243	-	1	NA	NA	NA	31	NM_001164314	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.055000	0.631841	
mm_112156.1	chr12	113306995	113307195	-	1	NA	NA	NA	121192	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.035000	0.507463	
mm_148179.1	chr18	78179070	78179270	-	1	NA	NA	NA	2	NM_001110273	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.015000	0.532338	
mm_62241.1	chr7	98703205	98703405	+	1	NA	NA	NA	-58	NM_028410	72981	Mm.4428	NM_028410	ENSMUSG00000030753	Thap12	2900052B10Rik|Dap4|Prkrir|Rpkrir	THAP domain containing 12	protein-coding	0.160000	0.830846	
mm_170499.1	chr19	24290024	24290224	-	1	NA	NA	NA	-9538	NM_008044	14297	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	0.030000	0.557214	
mm_149141.1	chr19	9003779	9003979	+	1	NA	NA	NA	-14025	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.000000	0.402985	-54(ACACTTAAAAGG,-,0.00)
mm_83244.1	chr9	42399789	42399989	-	1	NA	NA	NA	40	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.025000	0.422886	-92(CTCTTTTTAAAG,-,0.00),-91(TCTTTTTAAAGG,-,0.00),-90(CTTTTTAAAGGA,+,0.00)
mm_111879.1	chr12	108003971	108004171	-	1	NA	NA	NA	-657	NM_021399	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.075000	0.577114	
mm_92925.1	chr10	84440555	84440755	-	1	NA	NA	NA	-184	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.145000	0.771144	
mm_113560.1	chr13	38151638	38151838	+	1	NA	NA	NA	444	NM_023842	109620	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding	0.125000	0.711443	
mm_128816.1	chr15	67113828	67114028	-	1	NA	NA	NA	62954	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.020000	0.557214	
mm_34349.1	chr4	144529165	144529365	+	1	NA	NA	NA	9443	NM_198662	381572	Mm.184290	NM_198662	ENSMUSG00000028593	9430007A20Rik	Aadacl4|Gm1034	RIKEN cDNA 9430007A20 gene	protein-coding	0.000000	0.373134	
mm_23921.1	chr3	83055502	83055702	+	1	NA	NA	NA	64	NM_016784	53317	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	0.090000	0.572139	
mm_124785.1	chr15	7809949	7810149	+	1	NA	NA	NA	1	NM_001301332	14573	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0.050000	0.542289	-35(CTCTATAAATGC,-,0.00)
mm_85124.1	chr9	95489766	95489966	-	1	NA	NA	NA	22130	NM_026476	67958	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0.020000	0.417910	79(GCCTTTTAATGC,-,0.00),81(CTTTTAATGCGC,+,0.00)
mm_142552.1	chr17	46629312	46629512	-	1	NA	NA	NA	92	NM_175168	71461	Mm.181833	NM_175168	ENSMUSG00000023972	Ptk7	8430404F20Rik|chz|mPTK7/CCK4	PTK7 protein tyrosine kinase 7	protein-coding	0.165000	0.786070	
mm_13951.1	chr2	121300849	121301049	+	1	NA	NA	NA	5495	NM_001173506	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.025000	0.611940	
mm_133158.1	chr16	70401690	70401890	+	1	NA	NA	NA	87841	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.015000	0.412935	-33(CCATATAAAAAG,-,0.00)
mm_65968.1	chr7	30436940	30437140	-	1	NA	NA	NA	8542	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.030000	0.577114	
mm_20989.1	chr2	152185609	152185809	-	1	NA	NA	NA	-41131	NM_007788	12995	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0.030000	0.482587	-20(GCATATAAAAAG,-,0.00)
mm_147169.1	chr18	36726504	36726704	-	1	NA	NA	NA	211	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.025000	0.497512	
mm_105935.1	chr11	115133889	115134089	-	1	NA	NA	NA	3	NM_001347648	246746	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.030000	0.542289	-34(TGCTTTATATGC,-,0.00)
mm_158885.1	chr1	10216463	10216663	-	1	NA	NA	NA	16107	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.000000	0.323383	
mm_96310.1	chr11	63158670	63158870	+	1	NA	NA	NA	25967	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.020000	0.398010	
mm_98032.1	chr11	85311271	85311471	+	1	NA	NA	NA	117	NM_016910	53892	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	0.150000	0.706468	
mm_154999.1	chrX	38607220	38607420	+	1	NA	NA	NA	6662	NM_026902	68995	Mm.262453	NM_026902	ENSMUSG00000000355	Mcts1	1500019M23Rik|MCT-1	malignant T cell amplified sequence 1	protein-coding	0.005000	0.338308	
mm_1876.1	chr1	85608402	85608602	+	1	NA	NA	NA	-4611	NM_175397	109032	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|ENSMUSG00000075603|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.005000	0.427861	
mm_123722.1	chr14	70153325	70153525	-	1	NA	NA	NA	366	NM_146055	219158	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	0.110000	0.736318	
mm_94179.1	chr10	128919151	128919351	-	1	NA	NA	NA	46	NM_134006	19682	Mm.439856	NM_134006	ENSMUSG00000025350	Rdh5	9-cis|AI987873|RDH4|cRDH	retinol dehydrogenase 5	protein-coding	0.015000	0.537313	
mm_35200.1	chr4	19122418	19122618	-	1	NA	NA	NA	-158332	NM_013927	30952	Mm.445778	NM_013927	ENSMUSG00000056494	Cngb3	CCNC2|CNG6|Cngbeta2	cyclic nucleotide gated channel beta 3	protein-coding	0.000000	0.442786	13(TGCCTTATAAGA,-,0.00)
mm_42386.1	chr5	114935881	114936081	+	1	NA	NA	NA	-6221	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.010000	0.552239	
mm_116883.1	chr13	55182462	55182662	-	1	NA	NA	NA	-27220	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.050000	0.517413	-20(CCTTATAAAAAC,+,0.00),-20(CCTTATAAAAAC,-,0.00)
mm_7182.1	chr1	92717074	92717274	-	1	NA	NA	NA	-68333	NM_153114	260301	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.020000	0.552239	
mm_93962.1	chr10	127288347	127288547	-	1	NA	NA	NA	571	NM_001347171	110962	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.055000	0.616915	
mm_70224.1	chr7	145208014	145208214	-	1	NA	NA	NA	5	NR_033626	100040049	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.015000	0.517413	
mm_149401.1	chr19	11390237	11390437	+	1	NA	NA	NA	14849	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.005000	0.417910	
mm_131081.1	chr16	4741468	4741668	+	1	NA	NA	NA	-45	NM_010443	15369	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.000000	0.457711	
mm_154665.1	chrX	7878206	7878406	+	1	NA	NA	NA	0	NM_138606	18715	Mm.347478	NM_138606	ENSMUSG00000031155	Pim2	DXCch3|Pim-2	proviral integration site 2	protein-coding	0.120000	0.706468	
mm_76703.1	chr8	94532811	94533011	-	1	NA	NA	NA	-117	NM_153507	234577	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0.130000	0.756219	
mm_57116.1	chr6	122596481	122596681	-	1	NA	NA	NA	5863	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.015000	0.477612	
mm_31361.1	chr4	47242300	47242500	+	1	NA	NA	NA	34388	NM_009928	12819	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.015000	0.462687	
mm_28366.1	chr3	89891372	89891572	-	1	NA	NA	NA	21724	NM_001310676	16194	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.000000	0.482587	
mm_22375.1	chr2	181155928	181156128	-	1	NA	NA	NA	987	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.015000	0.651741	
mm_39030.1	chr4	152177956	152178156	-	1	NA	NA	NA	-44	NM_133348	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.145000	0.786070	
mm_158858.1	chrY	818551	818751	+	1	NA	NA	NA	-62	NM_011667	22202	Mm.422949	NM_011667	ENSMUSG00000069053	Uba1y	A1s9Y-1|Sby|Ube-2|Ube1ay|Ube1y|Ube1y-1|Ube1y1	ubiquitin-activating enzyme, Chr Y	protein-coding	0.055000	0.562189	
mm_146446.1	chr18	85071746	85071946	+	1	NA	NA	NA	-120322	NM_025969	67105	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	tranlocase of inner mitochondrial membrane 21	protein-coding	0.020000	0.497512	
mm_145290.1	chr18	53245568	53245768	+	1	NA	NA	NA	6	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.185000	0.835821	
mm_76667.1	chr8	93379721	93379921	-	1	NA	NA	NA	-42612	NM_021456	12623	Mm.22720	NM_021456	ENSMUSG00000057074	Ces1g	Ces-1|Ces1|Ses-1	carboxylesterase 1G	protein-coding	0.010000	0.457711	
mm_96635.1	chr11	69325472	69325672	+	1	NA	NA	NA	-686	NM_010599	16499	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0.030000	0.542289	
mm_84806.1	chr9	77261403	77261603	-	1	NA	NA	NA	86367	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.010000	0.462687	
mm_99856.1	chr11	109364946	109365146	+	1	NA	NA	NA	-1392	NR_038097	100036768	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	OTTMUSG00000003456	predicted gene 11696	ncRNA	0.015000	0.497512	
mm_47585.1	chr5	124861767	124861967	-	1	NA	NA	NA	354	NM_144819	215707	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.150000	0.810945	
mm_49746.1	chr6	34745936	34746136	+	1	NA	NA	NA	-34396	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.015000	0.477612	
mm_25394.1	chr3	107219528	107219728	+	1	NA	NA	NA	2104	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.020000	0.537313	
mm_141760.1	chr17	34267370	34267570	-	1	NA	NA	NA	4243	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.025000	0.577114	
mm_56233.1	chr6	90662009	90662209	-	1	NA	NA	NA	42863	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.005000	0.412935	
mm_92011.1	chr10	62340432	62340632	-	1	NA	NA	NA	-75	NR_038038	70162	Mm.441212	NR_038038		Hk1os	2210417K05Rik	hexokinase 1, opposite strand	ncRNA	0.045000	0.626866	
mm_90167.1	chr10	119453473	119453673	+	1	NA	NA	NA	-461	NM_133442	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding	0.100000	0.736318	
mm_64875.1	chr7	14438448	14438648	-	1	NA	NA	NA	3	NM_001199306	76971	Mm.290727	NM_175250	ENSMUSG00000030378	Sult2a8	2810007J24Rik	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8	protein-coding	0.000000	0.393035	77(ATCTATATAGGC,-,0.00)
mm_21239.1	chr2	156152709	156152909	-	1	NA	NA	NA	8576	NM_025946	67067	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	0.000000	0.343284	
mm_54475.1	chr6	34910778	34910978	-	1	NA	NA	NA	-47	NM_001013366	101240	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.150000	0.746269	
mm_113376.1	chr13	33004503	33004703	+	1	NA	NA	NA	62	NM_009256	20723	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0.020000	0.572139	
mm_136875.1	chr17	12991775	12991975	+	1	NA	NA	NA	384	NM_001113533	60532	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.115000	0.731343	
mm_26802.1	chr3	9886629	9886829	-	1	NA	NA	NA	-53050	NM_001195031	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.010000	0.422886	
mm_123471.1	chr14	65974778	65974978	-	1	NA	NA	NA	6395	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.025000	0.552239	
mm_131473.1	chr16	17070151	17070351	+	1	NA	NA	NA	112	NM_001291047	106369	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee-like 1 (Drosophila)	protein-coding	0.145000	0.741294	
mm_128637.1	chr15	59269692	59269892	-	1	NA	NA	NA	-37156	NR_045613	100416830	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0.000000	0.432836	
mm_86977.1	chr10	25432397	25432597	+	1	NA	NA	NA	24129	NM_013511	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.025000	0.552239	4(GCTTTTCTAGGG,+,0.00)
mm_58956.1	chr7	18839916	18840116	+	1	NA	NA	NA	50	NM_153760	243864	Mm.233503	NM_153760	ENSMUSG00000040987	Mill2	Micb	MHC I like leukocyte 2	protein-coding	0.010000	0.507463	
mm_119828.1	chr14	54268622	54268822	+	1	NA	NA	NA	9490	NM_134076	105501	Mm.28771	NM_134076	ENSMUSG00000040997	Abhd4	1110035H23Rik|AI429574|Abh4	abhydrolase domain containing 4	protein-coding	0.005000	0.542289	
mm_14710.1	chr2	143368637	143368837	+	1	NA	NA	NA	-177396	NM_008792	18549	Mm.294493	NM_008792	ENSMUSG00000027419	Pcsk2	6330411F23Rik|AI839700|Nec-2|Nec2|PC2|Phpp-2|SPC2	proprotein convertase subtilisin/kexin type 2	protein-coding	0.005000	0.552239	
mm_157176.1	chrX	9655515	9655715	-	1	NA	NA	NA	7368	NM_025975	67117	Mm.29150	NM_025975	ENSMUSG00000031176	Dynlt3	2310075M16Rik|AU042796|Tcte1l	dynein light chain Tctex-type 3	protein-coding	0.000000	0.328358	
mm_12090.1	chr2	60248118	60248318	+	1	NA	NA	NA	36266	NM_025422	66205	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.005000	0.348259	
mm_40149.1	chr5	35388830	35389030	+	1	NA	NA	NA	-187	NM_010445	15371	Mm.358606	NM_010445	ENSMUSG00000067438	Hmx1	Nkx5-3	H6 homeobox 1	protein-coding	0.155000	0.771144	
mm_40202.1	chr5	37028223	37028423	+	1	NA	NA	NA	-22534	NM_178394	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0.140000	0.736318	
mm_68789.1	chr7	123358457	123358657	-	1	NA	NA	NA	11358	NM_001122643	70497	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.005000	0.437811	
mm_149492.1	chr19	11818939	11819139	+	1	NA	NA	NA	364	NM_001286543	20908	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.085000	0.621891	-33(CTGCTTAAAGGG,-,0.00),-31(GCTTAAAGGGCC,+,0.00)
mm_18816.1	chr2	74578815	74579015	-	1	NA	NA	NA	33	NM_001110209	69605	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	0.105000	0.706468	
mm_87288.1	chr10	42501939	42502139	+	1	NA	NA	NA	-15	NM_017472	54198	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.130000	0.726368	
mm_84490.1	chr9	66846272	66846472	-	1	NA	NA	NA	-11666	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.010000	0.462687	
mm_41850.1	chr5	104439203	104439403	+	1	NA	NA	NA	3111	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.045000	0.452736	
mm_83435.1	chr9	44999094	44999294	-	1	NA	NA	NA	10396	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.010000	0.402985	
mm_107333.1	chr12	32246198	32246398	+	1	NA	NA	NA	-37649	NM_001146200	30955	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphoinositide-3-kinase, catalytic, gamma polypeptide	protein-coding	0.015000	0.487562	
mm_79270.1	chr9	50754116	50754316	+	1	NA	NA	NA	1245	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.015000	0.517413	
mm_117934.1	chr13	99434370	99434570	-	1	NA	NA	NA	-21644	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.005000	0.447761	
mm_128331.1	chr15	38300566	38300766	-	1	NA	NA	NA	45	NM_013692	21847	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.100000	0.696517	
mm_47380.1	chr5	122989211	122989411	-	1	NA	NA	NA	-43	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.100000	0.696517	
mm_135272.1	chr16	38399982	38400182	-	1	NA	NA	NA	33063	NM_134102	85031	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.020000	0.537313	
mm_23458.1	chr3	60472584	60472784	+	1	NA	NA	NA	-146	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.378109	
mm_81818.1	chr9	118040564	118040764	+	1	NA	NA	NA	142	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.120000	0.736318	
mm_60456.1	chr7	44477514	44477714	+	1	NA	NA	NA	-6903	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.010000	0.402985	
mm_22796.1	chr3	22251272	22251472	+	1	NA	NA	NA	2	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0.025000	0.517413	
mm_24300.1	chr3	89367452	89367652	+	1	NA	NA	NA	-2299	NM_029974	77772	Mm.164013	NM_029974	ENSMUSG00000042672	Dcst1	A330106H01Rik	DC-STAMP domain containing 1	protein-coding	0.035000	0.601990	
mm_142151.1	chr17	36020449	36020649	-	1	NA	NA	NA	11	NM_008207	15042	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0.030000	0.537313	
mm_13171.1	chr2	92914959	92915159	+	1	NA	NA	NA	-42	NM_030725	80976	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	0.080000	0.696517	
mm_54523.1	chr6	35994554	35994754	-	1	NA	NA	NA	-393430	NM_203491	243764	Mm.448632	NM_203491	ENSMUSG00000045613	Chrm2	AChR-M2|Chrm-2|M2	cholinergic receptor, muscarinic 2, cardiac	protein-coding	0.015000	0.338308	
mm_6922.1	chr1	84840372	84840572	-	1	NA	NA	NA	631	NM_025386	66153	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.020000	0.487562	
mm_37703.1	chr4	129377732	129377932	-	1	NA	NA	NA	196	NM_028603	73680	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	0.130000	0.646766	
mm_100927.1	chr11	6475360	6475560	-	1	NA	NA	NA	616	NM_011221	19291	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0.155000	0.766169	
mm_132840.1	chr16	45786884	45787084	+	1	NA	NA	NA	-44029	NM_172511	213012	Mm.247453	NM_172511	ENSMUSG00000033157	Abhd10	-	abhydrolase domain containing 10	protein-coding	0.015000	0.472637	
mm_54336.1	chr6	30642941	30643141	-	1	NA	NA	NA	3823	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.020000	0.547264	
mm_63506.1	chr7	127841761	127841961	+	1	NA	NA	NA	53	NM_009294	20909	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.055000	0.636816	
mm_23936.1	chr3	84180500	84180700	+	1	NA	NA	NA	5962	NR_036654	624713	Mm.442604	NR_036654		Gm6525	EG624713	ribosomal protein L36a pseudogene	pseudo	0.005000	0.532338	
mm_36575.1	chr4	88001621	88001821	-	1	NA	NA	NA	31686	NM_027326	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.010000	0.472637	-29(CCTTATCAAGGA,+,0.00)
mm_9282.1	chr1	171634478	171634678	-	1	NA	NA	NA	7322	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.363184	86(CCTTTTATATTT,+,0.00)
mm_60013.1	chr7	30737874	30738074	+	1	NA	NA	NA	1433	NM_008085	14447	Mm.436562	NM_008085	ENSMUSG00000061099	Gapdhs	Gapd-s|Gapds	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein-coding	0.025000	0.621891	
mm_149447.1	chr19	11485796	11485996	+	1	NA	NA	NA	-6142	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.010000	0.412935	78(GGGTTTAAATAG,-,0.00)
mm_131189.1	chr16	7224211	7224411	+	1	NA	NA	NA	154476	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.025000	0.542289	
mm_143940.1	chr17	86230320	86230520	-	1	NA	NA	NA	56758	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.040000	0.537313	
mm_70254.1	chr8	3500439	3500639	+	1	NA	NA	NA	20	NM_053177	94178	Mm.8356	NM_053177	ENSMUSG00000004567	Mcoln1	2210015I05Rik|TRPML1|mucolipidin	mucolipin 1	protein-coding	0.155000	0.751244	
mm_172458.1	chr7	40591987	40592187	+	1	NA	NA	NA	-82650	NR_045504	71029	Mm.399496	NR_045504	ENSMUSG00000102004	4933402C06Rik	-	RIKEN cDNA 4933402C06 gene	ncRNA	0.020000	0.442786	-79(CTTTATATGCCC,+,0.00)
mm_152737.1	chr19	19001009	19001209	-	1	NA	NA	NA	8	NM_146095	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.025000	0.457711	
mm_12754.1	chr2	79255271	79255471	+	1	NA	NA	NA	-55	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.045000	0.691542	
mm_136533.1	chr16	97514720	97514920	-	1	NA	NA	NA	-9884	NM_020622	52793	Mm.327932	NM_020622	ENSMUSG00000022938	Fam3b	2-21|9030624C24Rik|D16Jhu19e|ORF9|Pander	family with sequence similarity 3, member B	protein-coding	0.005000	0.462687	
mm_36982.1	chr4	109665164	109665364	-	1	NA	NA	NA	108	NM_007671	12580	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	protein-coding	0.035000	0.482587	
mm_13298.1	chr2	102287286	102287486	+	1	NA	NA	NA	-100926	NM_001290784	241576	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.005000	0.417910	-81(TCTTATAAAGAG,+,0.00)
mm_130753.1	chr15	101270402	101270602	-	1	NA	NA	NA	3656	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.040000	0.611940	
mm_50051.1	chr6	41177410	41177610	+	1	NA	NA	NA	-124762	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.005000	0.398010	-94(TGACTTAAAAGG,-,0.00),-63(GCTTTTAAGCAT,+,0.00)
mm_59158.1	chr7	24370393	24370593	+	1	NA	NA	NA	230	NM_008433	16534	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0.040000	0.666667	
mm_116366.1	chr13	40730773	40730973	-	1	NA	NA	NA	-416	NM_001122948	21418	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.095000	0.626866	-35(CCTTTTAAAATG,+,0.00)
mm_37250.1	chr4	118248830	118249030	-	1	NA	NA	NA	-38366	NR_106085	102466820		NR_106085	ENSMUSG00000098596	Mir7226	Gm27630|mmu-mir-7226	microRNA 7226	ncRNA	0.035000	0.592040	
mm_150286.1	chr19	34313604	34313804	+	1	NA	NA	NA	23045	NM_001146708	14102	Mm.1626	NM_007987	ENSMUSG00000024778	Fas	AI196731|APO1|APT1|CD95|TNFR6|Tnfrsf6|lpr	Fas (TNF receptor superfamily member 6)	protein-coding	0.000000	0.398010	
mm_78277.1	chr9	22100177	22100377	+	1	NA	NA	NA	1024	NM_009922	12797	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	0.010000	0.582090	-99(TGCTTTATAAAG,-,0.00),-97(CTTTATAAAGCC,+,0.00)
mm_107259.1	chr12	28771400	28771600	+	1	NA	NA	NA	19672	NM_201357	380752	Mm.273724	NM_201357	ENSMUSG00000036613	Tssc1	D12Ertd604e|Eipr1	tumor suppressing subtransferable candidate 1	protein-coding	0.000000	0.383085	
mm_18616.1	chr2	68471795	68471995	-	1	NA	NA	NA	86	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.140000	0.741294	
mm_37278.1	chr4	118791505	118791705	-	1	NA	NA	NA	-9019	NM_146309	258306	Mm.377426	NM_146309	ENSMUSG00000111159	Olfr1337	MOR259-10|Olfr219-ps1	olfactory receptor 1337	protein-coding	0.020000	0.432836	
mm_70792.1	chr8	22563998	22564198	+	1	NA	NA	NA	29715	NM_001198998	22335	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	0.015000	0.477612	
mm_75533.1	chr8	57320293	57320493	-	1	NA	NA	NA	466	NR_110474	102636514		NR_110474	ENSMUSG00000100510	Uph	-	upperhand	ncRNA	0.035000	0.527363	
mm_95051.1	chr11	32347733	32347933	+	1	NA	NA	NA	22	NM_177364	268396	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.150000	0.791045	-82(GGCCCTTTAAGC,-,0.00),-80(CCCTTTAAGCAG,+,0.00)
mm_139719.1	chr17	57467208	57467408	+	1	NA	NA	NA	78006	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.000000	0.328358	
mm_134292.1	chr16	14243819	14244019	-	1	NA	NA	NA	47489	NM_001161775	17880	Mm.250705	NM_013607	ENSMUSG00000018830	Myh11	AV071570|SM1|SM2|smMHC	myosin, heavy polypeptide 11, smooth muscle	protein-coding	0.005000	0.437811	-7(TTTTTTAAAGAC,+,0.00)
mm_159687.1	chr5	14938377	14938577	-	1	NA	NA	NA	-2	NM_001122661	624245	Mm.368256	NM_001122661	ENSMUSG00000091255	Speer4e	-	spermatogenesis associated glutamate (E)-rich protein 4e	protein-coding	0.005000	0.477612	
mm_52840.1	chr6	121644812	121645012	+	1	NA	NA	NA	8739	NM_175628	232345	Mm.30151	NM_175628	ENSMUSG00000030111	A2m	A2mp	alpha-2-macroglobulin	protein-coding	0.010000	0.422886	
mm_93081.1	chr10	89533435	89533635	-	1	NA	NA	NA	87	NM_001163504	20186	Mm.3095	NM_009108	ENSMUSG00000047638	Nr1h4	AI957360|Fxr|HRR1|RIP14|Rxrip14	nuclear receptor subfamily 1, group H, member 4	protein-coding	0.020000	0.547264	
mm_92905.1	chr10	83337763	83337963	-	1	NA	NA	NA	-46	NM_177388	338365	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.110000	0.681592	
mm_17827.1	chr2	33887623	33887823	-	1	NA	NA	NA	223	NM_175184	72543	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.070000	0.696517	
mm_23549.1	chr3	61366310	61366510	+	1	NA	NA	NA	1903	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.000000	0.333333	
mm_37573.1	chr4	126242211	126242411	-	1	NA	NA	NA	14008	NM_144941	245877	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0.030000	0.582090	
mm_41318.1	chr5	90471925	90472125	+	1	NA	NA	NA	11155	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.452736	
mm_112408.1	chr13	3563805	3564005	+	1	NA	NA	NA	25830	NM_008112	14569	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0.000000	0.328358	33(CCATATATAGAC,+,0.00)
mm_136027.1	chr16	76373746	76373946	-	1	NA	NA	NA	-797	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.025000	0.562189	
mm_21558.1	chr2	164182502	164182702	-	1	NA	NA	NA	140	NM_145369	209232	Mm.218273	NM_145369	ENSMUSG00000040154	Wfdc5	BC019734|Prg5|Wap1	WAP four-disulfide core domain 5	protein-coding	0.005000	0.552239	
mm_9590.1	chr1	174921602	174921802	-	1	NA	NA	NA	117	NM_011825	23893	Mm.25760	NM_011825	ENSMUSG00000050069	Grem2	Gremlin2|Prdc	gremlin 2, DAN family BMP antagonist	protein-coding	0.085000	0.676617	
mm_106940.1	chr12	8700268	8700468	+	1	NA	NA	NA	25687	NM_030723	80913	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.005000	0.313433	19(CCTTTTAAAGTT,+,0.00)
mm_25300.1	chr3	105964991	105965191	+	1	NA	NA	NA	-4843	NM_009725	11950	Mm.251152	NM_009725	ENSMUSG00000000563	Atp5f1	C76477	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	protein-coding	0.015000	0.497512	
mm_58596.1	chr7	5020482	5020682	+	1	NA	NA	NA	206	NM_001033383	319748	Mm.86607	NM_001033383	ENSMUSG00000074405	Zfp865	6430526N21Rik|Znf865	zinc finger protein 865	protein-coding	0.115000	0.766169	
mm_169881.1	chr16	3926450	3926650	+	1	NA	NA	NA	17541	NM_029738	76779	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	0.005000	0.487562	
mm_58466.1	chr7	3367318	3367518	+	1	NA	NA	NA	-26624	NM_133190	81905	Mm.357990	NM_133190	ENSMUSG00000053395	Cacng8	-	calcium channel, voltage-dependent, gamma subunit 8	protein-coding	0.025000	0.532338	
mm_78522.1	chr9	34488633	34488833	+	1	NA	NA	NA	2	NM_001190911	67703	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kin of IRRE like 3 (Drosophila)	protein-coding	0.065000	0.592040	
mm_117077.1	chr13	59557120	59557320	-	1	NA	NA	NA	127	NM_001284218	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.180000	0.776119	
mm_27354.1	chr3	50417198	50417398	-	1	NA	NA	NA	26315	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.303483	
mm_119668.1	chr14	52436983	52437183	+	1	NA	NA	NA	-13310	NM_020514	57271	Mm.88824	NM_020514	ENSMUSG00000035626	Olfr1509	MOR244-3|Mor83|Or83	olfactory receptor 1509	protein-coding	0.000000	0.467662	
mm_84524.1	chr9	67043857	67044057	-	1	NA	NA	NA	-86	NM_001164253	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.115000	0.741294	
mm_56820.1	chr6	116735239	116735439	-	1	NA	NA	NA	-18581	NM_178768	319776	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.000000	0.373134	
mm_81498.1	chr9	110032102	110032302	+	1	NA	NA	NA	-19819	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.005000	0.447761	
mm_69341.1	chr7	129657898	129658098	-	1	NA	NA	NA	66135	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.025000	0.452736	6(GTTTTTATGGTG,+,0.00)
mm_59688.1	chr7	28443858	28444058	+	1	NA	NA	NA	3021	NM_001039192	63986	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.010000	0.412935	
mm_122213.1	chr14	32146097	32146297	-	1	NA	NA	NA	4174	NM_020597	17695	Mm.2540	NM_020597	ENSMUSG00000021907	Msmb	PIP|PSP94|beta-MSP	beta-microseminoprotein	protein-coding	0.020000	0.482587	-31(CCCCATAAAAAG,-,0.00),-29(CCATAAAAAGGA,+,0.00)
mm_21766.1	chr2	164844392	164844592	-	1	NA	NA	NA	10719	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.030000	0.552239	
mm_16873.1	chr2	12301890	12302090	-	1	NA	NA	NA	-46	NM_001001309	241226	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0.100000	0.701493	
mm_67730.1	chr7	90129844	90130044	-	1	NA	NA	NA	-8	NR_046007	78329	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	0.125000	0.746269	
mm_115351.1	chr13	112752304	112752504	+	1	NA	NA	NA	-48373	NM_008903	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.020000	0.398010	-98(GCCTATAAATAA,-,0.00),-32(ACCTATATAAGG,-,0.00)
mm_77445.1	chr8	121792123	121792323	-	1	NA	NA	NA	37346	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.020000	0.502488	
mm_128549.1	chr15	55557249	55557449	-	1	NA	NA	NA	-37	NM_026759	68537	Mm.236795	NM_026759	ENSMUSG00000022370	Mrpl13	1110002D09Rik	mitochondrial ribosomal protein L13	protein-coding	0.110000	0.666667	
mm_49153.1	chr6	12041285	12041485	+	1	NA	NA	NA	68195	NR_003631	625347	Mm.389084	NM_001039041	ENSMUSG00000057223	Gm6578	EG625347	mitochondrial ribosomal protein L32 pseudogene	pseudo	0.005000	0.402985	
mm_102400.1	chr11	59002335	59002535	-	1	NA	NA	NA	24342	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.005000	0.517413	
mm_14960.1	chr2	152080870	152081070	+	1	NA	NA	NA	-559	NM_001160410	545474	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.055000	0.577114	
mm_78533.1	chr9	35127771	35127971	+	1	NA	NA	NA	-11061	NM_009178	20443	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0.020000	0.472637	
mm_113782.1	chr13	45507377	45507577	+	1	NA	NA	NA	33	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.110000	0.741294	
mm_118136.1	chr13	104863789	104863989	-	1	NA	NA	NA	4	NM_029984	77803	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik	family with sequence similarity 159, member B	protein-coding	0.045000	0.631841	
mm_47289.1	chr5	122234528	122234728	-	1	NA	NA	NA	24341	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.005000	0.477612	
mm_53111.1	chr6	125083331	125083531	+	1	NA	NA	NA	12154	NM_001163268	381810	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0.000000	0.412935	
mm_47573.1	chr5	124496889	124497089	-	1	NA	NA	NA	13834	NM_029532	76167	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.035000	0.507463	
mm_164901.1	chr18	67252244	67252444	+	1	NA	NA	NA	-6514	NM_172630	225651	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	A530095G11	metallophosphoesterase 1	protein-coding	0.010000	0.467662	
mm_128859.1	chr15	72806336	72806536	-	1	NA	NA	NA	3888	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.000000	0.497512	
mm_59173.1	chr7	24407148	24407348	+	1	NA	NA	NA	7620	NM_028047	71997	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.010000	0.537313	
mm_80714.1	chr9	92275622	92275822	+	1	NA	NA	NA	120	NM_001195084	18828	Mm.10306	NM_008880	ENSMUSG00000032372	Plscr2	-	phospholipid scramblase 2	protein-coding	0.010000	0.447761	
mm_65032.1	chr7	18532304	18532504	-	1	NA	NA	NA	-177	NM_054060	114868	Mm.389809	NM_054060	ENSMUSG00000070798	Psg25	cea13	pregnancy-specific glycoprotein 25	protein-coding	0.005000	0.532338	
mm_3668.1	chr1	153652849	153653049	+	1	NA	NA	NA	-88	NM_026380	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding	0.045000	0.592040	
mm_8474.1	chr1	153414130	153414330	-	1	NA	NA	NA	3	NR_033736	626058	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0.040000	0.522388	-34(GTGTATATAAGC,-,0.00)
mm_32609.1	chr4	112072581	112072781	+	1	NA	NA	NA	665	NM_001347180	320640	Mm.253775	NM_178786	ENSMUSG00000055960	Skint4	9530098N22Rik	selection and upkeep of intraepithelial T cells 4	protein-coding	0.010000	0.402985	
mm_156913.1	chrX	169082430	169082630	+	1	NA	NA	NA	-30348	NM_001287530	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.005000	0.517413	
mm_51875.1	chr6	90552929	90553129	+	1	NA	NA	NA	2181	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.005000	0.388060	
mm_163491.1	chr12	109459994	109460194	+	1	NA	NA	NA	6639	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.040000	0.611940	
mm_119305.1	chr14	34819723	34819923	+	1	NA	NA	NA	-313	NM_008166	14803	Mm.121569	NM_008166	ENSMUSG00000041078	Grid1	GluD1|GluRdelta1	glutamate receptor, ionotropic, delta 1	protein-coding	0.115000	0.791045	
mm_62419.1	chr7	101321044	101321244	+	1	NA	NA	NA	-175	NM_019990	56018	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	0.140000	0.805970	
mm_24749.1	chr3	95319873	95320073	+	1	NA	NA	NA	1143	NM_001320492	76893	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.015000	0.482587	
mm_165327.1	chr2	110721470	110721670	+	1	NA	NA	NA	76	NM_172979	269328	Mm.32566	NM_172979	ENSMUSG00000050808	Muc15	4732460E09|D730046L02Rik|MUC-15	mucin 15	protein-coding	0.015000	0.542289	
mm_46512.1	chr5	105235328	105235528	-	1	NA	NA	NA	4105	NM_001039646	626578	Mm.275893	NM_001039646	ENSMUSG00000105096	Gbp10	-	guanylate-binding protein 10	protein-coding	0.010000	0.343284	
mm_154779.1	chrX	12936830	12937030	+	1	NA	NA	NA	57	NM_001272033	245350	Mm.302695	NM_001272033		AA414768	OTTMUSG00000017000	expressed sequence AA414768	protein-coding	0.105000	0.701493	
mm_49336.1	chr6	21312055	21312255	+	1	NA	NA	NA	96046	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.015000	0.472637	-33(CACTTTTAAGGG,-,0.00),-32(ACTTTTAAGGGG,+,0.00)
mm_162978.1	chr11	19924002	19924202	+	1	NA	NA	NA	-340	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.050000	0.572139	
mm_121038.1	chr14	80006134	80006334	+	1	NA	NA	NA	5932	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding	0.025000	0.482587	
mm_78477.1	chr9	32695599	32695799	+	1	NA	NA	NA	-343	NM_011808	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.070000	0.587065	
mm_141583.1	chr17	32391765	32391965	-	1	NA	NA	NA	-2426	NR_033525	22404	Mm.274948	NM_011717	ENSMUSG00000024050	Wiz	-	widely-interspaced zinc finger motifs	protein-coding	0.015000	0.522388	
mm_169249.1	chr13	75645137	75645337	-	1	NA	NA	NA	191	NR_030451	751556		NR_030451	ENSMUSG00000076236	Mir682	Mirn682|mir-682|mmu-mir-682	microRNA 682	ncRNA	0.010000	0.343284	
mm_138900.1	chr17	43568559	43568759	+	1	NA	NA	NA	208	NM_013737	27226	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.040000	0.582090	
mm_71947.1	chr8	70376714	70376914	+	1	NA	NA	NA	3266	NM_016685	12845	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	0.035000	0.492537	
mm_34464.1	chr4	148140673	148140873	+	1	NA	NA	NA	283	NM_027985	71890	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding	0.075000	0.686567	
mm_141823.1	chr17	34615952	34616152	-	1	NA	NA	NA	-81	NM_152922	81701	Mm.231343	NM_152922	ENSMUSG00000015467	Egfl8	Ng3	EGF-like domain 8	protein-coding	0.030000	0.562189	
mm_13773.1	chr2	118663642	118663842	+	1	NA	NA	NA	165	NM_001033254	214230	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 protein (Cdc42/Rac)-activated kinase 6	protein-coding	0.040000	0.606965	
mm_75732.1	chr8	69395470	69395670	-	1	NA	NA	NA	-26	NR_038043	378466	Mm.37846	NM_194351	ENSMUSG00000110444	Gm10033	9330175B10Rik|ENSMUSG00000057924|Gm10311	predicted gene 10033	ncRNA	0.050000	0.572139	
mm_160731.1	chr10	77771294	77771494	-	1	NA	NA	NA	-69	NM_001101630	100041261	Mm.477434	NM_001101630	ENSMUSG00000095817	Gm3238	-	predicted gene 3238	protein-coding	0.005000	0.502488	
mm_16097.1	chr2	168978198	168978398	+	1	NA	NA	NA	29	NR_040326	75508	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.015000	0.517413	
mm_89523.1	chr10	94356968	94357168	+	1	NA	NA	NA	-58365	NR_033209	215472	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	0.040000	0.447761	
mm_79311.1	chr9	52049339	52049539	+	1	NA	NA	NA	-734	NR_023357	629557	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.015000	0.338308	
mm_137597.1	chr17	28147442	28147642	+	1	NA	NA	NA	5016	NM_001004366	268935	Mm.258491	NM_001004366	ENSMUSG00000038677	Scube3	CEGF3|D030038I21Rik	signal peptide, CUB domain, EGF-like 3	protein-coding	0.005000	0.432836	
mm_124959.1	chr15	12923999	12924199	+	1	NA	NA	NA	99284	NM_001130149	14000	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	0.025000	0.472637	
mm_88007.1	chr10	67096912	67097112	+	1	NA	NA	NA	-24	NM_178606	28193	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.175000	0.845771	
mm_78358.1	chr9	25562591	25562791	+	1	NA	NA	NA	81094	NM_026189	67484	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.015000	0.383085	
mm_10992.1	chr2	26315458	26315658	+	1	NA	NA	NA	25	NM_153410	67839	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	0.150000	0.761194	
mm_45036.1	chr5	39641781	39641981	-	1	NA	NA	NA	2750	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.005000	0.562189	
mm_45272.1	chr5	64680251	64680451	-	1	NA	NA	NA	-69652	NR_045078	100042198	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0.015000	0.532338	
mm_56355.1	chr6	93717518	93717718	-	1	NA	NA	NA	195345	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.015000	0.412935	-96(GTCCTTTAAAAC,-,0.00),-94(CCTTTAAAACTA,+,0.00)
mm_129205.1	chr15	76512173	76512373	-	1	NA	NA	NA	-455	NM_010046	13350	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	0.050000	0.557214	
mm_56396.1	chr6	96115816	96116016	-	1	NA	NA	NA	2762	NM_182808	320265	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.015000	0.412935	
mm_136461.1	chr16	95349676	95349876	-	1	NA	NA	NA	92218	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.015000	0.517413	
mm_145725.1	chr18	63988425	63988625	+	1	NA	NA	NA	-265834	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.000000	0.268657	
mm_118369.1	chr13	116309569	116309769	-	1	NA	NA	NA	19	NM_021459	16392	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0.115000	0.656716	
mm_165415.1	chr2	147275531	147275731	+	1	NA	NA	NA	87162	NR_040330	99041	Mm.373081	NR_040330		AI646519	Aspax1|OTTMUSG00000015701	expressed sequence AI646519	ncRNA	0.020000	0.472637	
mm_96321.1	chr11	63989779	63989979	+	1	NA	NA	NA	25653	NR_131111	78883	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	0.020000	0.432836	
mm_98208.1	chr11	87797389	87797589	+	1	NA	NA	NA	3705	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.055000	0.597015	
mm_20348.1	chr2	127744437	127744637	-	1	NA	NA	NA	-14640	NM_145532	228576	Mm.133036	NM_145532	ENSMUSG00000027377	Mall	BC012256|BENE	mal, T cell differentiation protein-like	protein-coding	0.010000	0.552239	-41(GTCTTTAAAAGG,-,0.00),-40(TCTTTAAAAGGA,+,0.00)
mm_113064.1	chr13	23742209	23742409	+	1	NA	NA	NA	3212	NM_175653	319148	Mm.262517	NM_175653	ENSMUSG00000069310	Hist1h3c	H3-143	histone cluster 1, H3c	protein-coding	0.000000	0.437811	
mm_83577.1	chr9	48339638	48339838	-	1	NA	NA	NA	1160	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.010000	0.427861	
mm_22637.1	chr3	14863359	14863559	+	1	NA	NA	NA	-79	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.030000	0.532338	19(CTATATAAAAGA,-,0.00)
mm_55248.1	chr6	52713533	52713733	-	1	NA	NA	NA	-96	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.050000	0.532338	
mm_123556.1	chr14	66847199	66847399	-	1	NA	NA	NA	21301	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.010000	0.457711	
mm_129380.1	chr15	78173872	78174072	-	1	NA	NA	NA	136	NM_025931	67042	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	0.045000	0.636816	
mm_132810.1	chr16	45158999	45159199	+	1	NA	NA	NA	270	NM_026402	67841	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	0.060000	0.621891	
mm_101075.1	chr11	11675118	11675318	-	1	NA	NA	NA	-10707	NM_009578	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.000000	0.328358	
mm_107113.1	chr12	18135814	18136014	+	1	NA	NA	NA	-378596	NM_001033157	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.120000	0.761194	
mm_144054.1	chr17	90606807	90607007	-	1	NA	NA	NA	-151027	NM_001346959	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.000000	0.487562	
mm_139951.1	chr17	71214717	71214917	+	1	NA	NA	NA	10163	NM_001164885	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.010000	0.532338	
mm_100342.1	chr11	118393849	118394049	+	1	NA	NA	NA	7982	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.035000	0.582090	
mm_131597.1	chr16	18877161	18877361	+	1	NA	NA	NA	511	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.180000	0.810945	
mm_138297.1	chr17	34630814	34631014	+	1	NA	NA	NA	1228	NM_030890	260297	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31	proline-rich transmembrane protein 1	protein-coding	0.110000	0.746269	
mm_59749.1	chr7	28820583	28820783	+	1	NA	NA	NA	-4655	NM_016772	51798	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.030000	0.507463	
mm_138892.1	chr17	43568017	43568217	+	1	NA	NA	NA	-334	NM_013737	27226	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.020000	0.452736	-16(TCATTAATAGCC,+,0.00)
mm_121701.1	chr14	14764459	14764659	-	1	NA	NA	NA	-56256	NM_001195229	674895	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.010000	0.512438	
mm_115100.1	chr13	102733235	102733435	+	1	NA	NA	NA	-26920	NR_130318	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.005000	0.398010	37(CCTCTTATAGAA,+,0.00)
mm_145846.1	chr18	65448987	65449187	+	1	NA	NA	NA	18090	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.348259	4(TCACATATAAGG,-,0.00)
mm_23790.1	chr3	79542746	79542946	+	1	NA	NA	NA	24833	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.020000	0.567164	
mm_79582.1	chr9	58139452	58139652	+	1	NA	NA	NA	4887	NM_001162479	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.020000	0.487562	-34(ACGCTTTAAAGG,-,0.00),-33(CGCTTTAAAGGC,-,0.00),-32(GCTTTAAAGGCT,+,0.00)
mm_41282.1	chr5	90460800	90461000	+	1	NA	NA	NA	30	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.020000	0.442786	
mm_163015.1	chr11	45852506	45852706	-	1	NA	NA	NA	642	NM_001045520	216705	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.035000	0.552239	
mm_161563.1	chr16	17980298	17980498	+	1	NA	NA	NA	-167	NM_016983	22363	Mm.377118	NM_016983	ENSMUSG00000059280	Vpreb2	CD179b|VpreB1|Vpreb-2	pre-B lymphocyte gene 2	protein-coding	0.000000	0.557214	
mm_48264.1	chr5	137893532	137893732	-	1	NA	NA	NA	-21874	NM_001024932	545812	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.000000	0.393035	
mm_108755.1	chr12	89013062	89013262	+	1	NA	NA	NA	59772	NM_172544	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.005000	0.437811	
mm_5462.1	chr1	36369080	36369280	-	1	NA	NA	NA	1	NM_172652	226976	Mm.24734	NM_172652	ENSMUSG00000010453	Kansl3	4632411B12Rik|4932435K23|AI431067|AI647574|C85723|Kiaa1310|mKIAA1310	KAT8 regulatory NSL complex subunit 3	protein-coding	0.160000	0.731343	
mm_94638.1	chr11	16905245	16905445	+	1	NA	NA	NA	45937	NR_110421	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.015000	0.398010	
mm_42957.1	chr5	123066121	123066321	+	1	NA	NA	NA	-10054	NM_001039723	330189	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0.035000	0.527363	
mm_156867.1	chrX	164438019	164438219	+	1	NA	NA	NA	1125	NM_001313737	68854	Mm.33225	NM_026853	ENSMUSG00000031382	Asb11	1110067L12Rik|1600009D24Rik	ankyrin repeat and SOCS box-containing 11	protein-coding	0.015000	0.412935	
mm_49432.1	chr6	29272607	29272807	+	1	NA	NA	NA	81	NM_023516	69573	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.070000	0.587065	
mm_96509.1	chr11	68458298	68458498	+	1	NA	NA	NA	26273	NM_177320	320207	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik	phosphoinositide-3-kinase, regulatory subunit 5, p101	protein-coding	0.025000	0.502488	
mm_36691.1	chr4	96591475	96591675	-	1	NA	NA	NA	-90	NM_028979	74519	Mm.458387	NM_028979	ENSMUSG00000015224	Cyp2j9	8430417E17Rik	cytochrome P450, family 2, subfamily j, polypeptide 9	protein-coding	0.025000	0.527363	
mm_121473.1	chr14	121035071	121035271	+	1	NA	NA	NA	-403	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.090000	0.626866	
mm_55148.1	chr6	51466733	51466933	-	1	NA	NA	NA	3061	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.010000	0.333333	23(CCTCTTAAAACC,+,0.00)
mm_143938.1	chr17	86230277	86230477	-	1	NA	NA	NA	56801	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.040000	0.527363	
mm_98415.1	chr11	94564778	94564978	+	1	NA	NA	NA	-196	NM_007689	12643	Mm.440523	NM_007689	ENSMUSG00000039084	Chad	SLRR4A	chondroadherin	protein-coding	0.035000	0.597015	
mm_114555.1	chr13	74121341	74121541	+	1	NA	NA	NA	-74	NM_001081060	105243	Mm.261564	NM_001081060	ENSMUSG00000036123	Slc9a3	9030624O13Rik|AI930210|NHE-3|NHE3	solute carrier family 9 (sodium/hydrogen exchanger), member 3	protein-coding	0.085000	0.721393	
mm_163892.1	chr14	27237828	27238028	-	1	NA	NA	NA	-82	NM_027871	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.015000	0.522388	
mm_128087.1	chr15	27762956	27763156	-	1	NA	NA	NA	-81514	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.005000	0.442786	
mm_95727.1	chr11	54596113	54596313	+	1	NA	NA	NA	67	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.015000	0.417910	
mm_3457.1	chr1	150103831	150104031	+	1	NA	NA	NA	3900	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.487562	
mm_62391.1	chr7	100950723	100950923	+	1	NA	NA	NA	13543	NM_183168	233571	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.030000	0.616915	
mm_18822.1	chr2	74606067	74606267	-	1	NA	NA	NA	-27219	NM_027133	69605	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	0.005000	0.482587	
mm_119299.1	chr14	34694907	34695107	+	1	NA	NA	NA	21079	NM_001301330	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.005000	0.373134	
mm_145071.1	chr18	42053582	42053782	+	1	NA	NA	NA	-28	NM_172966	269016	Mm.45472	NM_172966	ENSMUSG00000057719	Sh3rf2	2310046K19|9130023G24Rik|AI452083|Ppp1r39|RNF158	SH3 domain containing ring finger 2	protein-coding	0.025000	0.532338	
mm_32195.1	chr4	101419217	101419417	+	1	NA	NA	NA	-4	NM_001177604	11639	Mm.42040	NM_009647	ENSMUSG00000028527	Ak4	AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e	adenylate kinase 4	protein-coding	0.130000	0.746269	
mm_148861.1	chr19	6400517	6400717	+	1	NA	NA	NA	34	NM_011242	19395	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.015000	0.487562	
mm_21207.1	chr2	155640649	155640849	-	1	NA	NA	NA	17869	NR_030757	735275		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	0.025000	0.592040	
mm_140263.1	chr17	84626423	84626623	+	1	NA	NA	NA	24	NM_172256	213575	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0.065000	0.641791	
mm_86029.1	chr9	113662410	113662610	-	1	NA	NA	NA	45749	NM_001164678	18571	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0.005000	0.422886	
mm_17070.1	chr2	22744817	22745017	-	1	NA	NA	NA	-29410	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.055000	0.492537	66(ACCTTTAAGAGG,-,0.00),67(CCTTTAAGAGGT,+,0.00)
mm_21895.1	chr2	166155601	166155801	-	1	NA	NA	NA	-18	NM_028072	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.040000	0.592040	
mm_62734.1	chr7	110950957	110951157	+	1	NA	NA	NA	-4870	NM_010826	17540	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0.020000	0.577114	
mm_163065.1	chr11	67090265	67090465	+	1	NA	NA	NA	-9439	NR_105888	102466766		NR_105888	ENSMUSG00000098855	Mir6923	Gm27312|mmu-mir-6923	microRNA 6923	ncRNA	0.010000	0.587065	
mm_111046.1	chr12	79663518	79663718	-	1	NA	NA	NA	261115	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.010000	0.462687	
mm_82709.1	chr9	24503062	24503262	-	1	NA	NA	NA	-22	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.170000	0.791045	
mm_127053.1	chr15	96709864	96710064	+	1	NA	NA	NA	-10266	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.090000	0.656716	
mm_127158.1	chr15	98632268	98632468	+	1	NA	NA	NA	40	NM_001044741	12297	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0.070000	0.721393	
mm_68127.1	chr7	102209768	102209968	-	1	NA	NA	NA	-1	NM_001287167	269966	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	0.110000	0.746269	
mm_129156.1	chr15	76233709	76233909	-	1	NA	NA	NA	-2431	NM_011117	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.045000	0.547264	
mm_150679.1	chr19	42052854	42053054	+	1	NA	NA	NA	726	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	0.025000	0.512438	
mm_76795.1	chr8	102785671	102785871	-	1	NA	NA	NA	-660	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.030000	0.497512	
mm_107420.1	chr12	34990513	34990713	+	1	NA	NA	NA	5852	NM_029294	75456	Mm.79179	NM_029294	ENSMUSG00000092305	Prps1l1	1700011K15Rik	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding	0.005000	0.437811	-35(TCCTTTATAAAC,-,0.00),-33(CTTTATAAACCA,+,0.00)
mm_148899.1	chr19	6910033	6910233	+	1	NA	NA	NA	435	NM_026306	67674	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.080000	0.606965	
mm_159731.1	chr5	52775217	52775417	+	1	NA	NA	NA	-92	NM_001309445	78796	Mm.266886	NM_030185	ENSMUSG00000029179	Zcchc4	4930449I23Rik	zinc finger, CCHC domain containing 4	protein-coding	0.015000	0.532338	
mm_88473.1	chr10	77606150	77606350	+	1	NA	NA	NA	153	NM_019929	20610	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.155000	0.711443	
mm_13544.1	chr2	110731620	110731820	+	1	NA	NA	NA	10226	NM_172979	269328	Mm.32566	NM_172979	ENSMUSG00000050808	Muc15	4732460E09|D730046L02Rik|MUC-15	mucin 15	protein-coding	0.005000	0.452736	
mm_15852.1	chr2	164777470	164777670	+	1	NA	NA	NA	2164	NM_009394	21925	Mm.1716	NM_009394	ENSMUSG00000017300	Tnnc2	Tncs	troponin C2, fast	protein-coding	0.035000	0.527363	
mm_94324.1	chr11	4257487	4257687	+	1	NA	NA	NA	19	NM_008501	16878	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.020000	0.636816	
mm_100884.1	chr11	6008735	6008935	-	1	NA	NA	NA	53077	NM_019661	56418	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0.055000	0.552239	
mm_135749.1	chr16	55934724	55934924	-	1	NA	NA	NA	24	NM_001159364	74201	Mm.178427	NM_028815	ENSMUSG00000022604	Cep97	2810403B08Rik|4932439K18Rik|AA437768|E130116N02Rik|Lrriq2	centrosomal protein 97	protein-coding	0.060000	0.577114	
mm_78946.1	chr9	45138456	45138656	+	1	NA	NA	NA	-486	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.060000	0.606965	
mm_16352.1	chr2	174346520	174346720	+	1	NA	NA	NA	16531	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.005000	0.323383	
mm_53190.1	chr6	125483576	125483776	+	1	NA	NA	NA	11079	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.020000	0.457711	
mm_133230.1	chr16	76824671	76824871	+	1	NA	NA	NA	186110	NR_040573	76601	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	0.025000	0.437811	
mm_172368.1	chr7	123211774	123211974	+	1	NA	NA	NA	-2992	NM_146198	233836	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.015000	0.477612	
mm_165722.1	chr3	101606842	101607042	+	1	NA	NA	NA	-2235	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.025000	0.412935	
mm_162352.1	chr1	55335793	55335993	-	1	NA	NA	NA	26814	NM_001113367	75388	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	bol, boule-like (Drosophila)	protein-coding	0.000000	0.348259	-85(GGCCCTAAATAG,-,0.00)
mm_169727.1	chr15	80920225	80920425	-	1	NA	NA	NA	-19714	NR_039573	100628612		NR_039573	ENSMUSG00000092868	Mir5113	mir-5113|mmu-mir-5113|mu-mir-5113	microRNA 5113	ncRNA	0.005000	0.497512	
mm_37469.1	chr4	123564515	123564715	-	1	NA	NA	NA	-51805	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.010000	0.537313	
mm_85688.1	chr9	108057201	108057401	-	1	NA	NA	NA	4142	NM_177275	320844	Mm.449806	NM_177275	ENSMUSG00000032593	Amigo3	E430002N15Rik|ali3|mKIAA1851	adhesion molecule with Ig like domain 3	protein-coding	0.010000	0.532338	
mm_112081.1	chr12	112671472	112671672	-	1	NA	NA	NA	2704	NM_001165894	11651	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.055000	0.611940	
mm_138252.1	chr17	34590084	34590284	+	1	NA	NA	NA	378	NM_134116	106512	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.015000	0.621891	
mm_20597.1	chr2	131328886	131329086	-	1	NA	NA	NA	23906	NM_178607	51902	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	0.000000	0.522388	
mm_52481.1	chr6	114315585	114315785	+	1	NA	NA	NA	33050	NM_178703	232333	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.020000	0.517413	-24(CTTTTTATGCTG,+,0.00)
mm_74768.1	chr8	20921995	20922195	-	1	NA	NA	NA	-24	NM_001025353	100503992	Mm.490240	NM_001025353	ENSMUSG00000071165	Gm6040	Defb51|EG574083	predicted gene 6040	protein-coding	0.005000	0.338308	-71(GGCTTTTTATGG,-,0.00),-69(CTTTTTATGGAA,+,0.00)
mm_131406.1	chr16	14403055	14403255	+	1	NA	NA	NA	41597	NM_008576	17250	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.000000	0.398010	
mm_72627.1	chr8	84660102	84660302	+	1	NA	NA	NA	2650	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.035000	0.552239	
mm_69922.1	chr7	141875103	141875303	-	1	NA	NA	NA	27203	NM_023764	54473	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	0.010000	0.393035	53(CTATTTAAAAGC,-,0.00)
mm_35361.1	chr4	32375062	32375262	-	1	NA	NA	NA	-42273	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.010000	0.412935	
mm_144890.1	chr18	36939095	36939295	+	1	NA	NA	NA	-10	NM_198117	353234	Mm.308500	NM_198117	ENSMUSG00000104148	Pcdha2	-	protocadherin alpha 2	protein-coding	0.010000	0.348259	
mm_71472.1	chr8	46535068	46535268	+	1	NA	NA	NA	-16901	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.020000	0.487562	
mm_160482.1	chr8	123982807	123983007	-	1	NA	NA	NA	215	NM_019552	56199	Mm.274243	NM_019552	ENSMUSG00000031974	Abcb10	Abc-me|Abcb12	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding	0.150000	0.815920	
mm_69695.1	chr7	140036187	140036387	-	1	NA	NA	NA	63	NM_133755	74237	Mm.40888	NM_133755	ENSMUSG00000025474	Tubgcp2	1700022B05Rik	tubulin, gamma complex associated protein 2	protein-coding	0.115000	0.731343	
mm_131764.1	chr16	22892466	22892666	+	1	NA	NA	NA	551	NM_001276449	11625	Mm.197554	NM_013465	ENSMUSG00000022868	Ahsg	-	alpha-2-HS-glycoprotein	protein-coding	0.015000	0.477612	
mm_105604.1	chr11	106779421	106779621	-	1	NA	NA	NA	-6	NR_027785	50776	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	-	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	0.095000	0.681592	
mm_26958.1	chr3	21958535	21958735	-	1	NA	NA	NA	-118017	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.010000	0.447761	
mm_24591.1	chr3	93444986	93445186	+	1	NA	NA	NA	2756	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.035000	0.567164	
mm_151754.1	chr19	5098410	5098610	-	1	NA	NA	NA	11	NM_001302333	12794	Mm.299737	NM_009920	ENSMUSG00000024873	Cnih2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding	0.165000	0.830846	
mm_15006.1	chr2	152476981	152477181	+	1	NA	NA	NA	18	NM_176950	319579	Mm.190454	NM_176950	ENSMUSG00000049560	Defb20	9230107O10Rik|BD-20|mBD-20	defensin beta 20	protein-coding	0.010000	0.522388	
mm_133952.1	chr16	3976531	3976731	-	1	NA	NA	NA	1	NM_175547	268857	Mm.215994	NM_175547	ENSMUSG00000049871	Nlrc3	CLR16.2|D230007K08Rik|mFLJ00348	NLR family, CARD domain containing 3	protein-coding	0.010000	0.567164	-31(AGCTTTTAAAAC,-,0.00),-30(GCTTTTAAAACT,+,0.00)
mm_40418.1	chr5	53378826	53379026	+	1	NA	NA	NA	111820	NM_001145433	66278	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.015000	0.517413	
mm_64533.1	chr7	144175369	144175569	+	1	NA	NA	NA	-51	NM_001113373	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.055000	0.472637	
mm_121410.1	chr14	119445527	119445727	+	1	NA	NA	NA	-303600	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA	0.005000	0.353234	
mm_41097.1	chr5	87694665	87694865	+	1	NA	NA	NA	4660	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.512438	
mm_146757.1	chr18	16808456	16808656	-	1	NA	NA	NA	690	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.080000	0.661692	
mm_106052.1	chr11	116086854	116087054	-	1	NA	NA	NA	10	NM_016852	22378	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0.080000	0.582090	
mm_122080.1	chr14	30607715	30607915	-	1	NA	NA	NA	2495	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.015000	0.636816	
mm_37308.1	chr4	119294359	119294559	-	1	NA	NA	NA	54	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.120000	0.711443	
mm_55308.1	chr6	54972472	54972672	-	1	NA	NA	NA	40	NM_172729	107607	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.105000	0.726368	
mm_9642.1	chr1	177203809	177204009	-	1	NA	NA	NA	44858	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.000000	0.447761	
mm_39414.1	chr5	15618999	15619199	+	1	NA	NA	NA	0	NM_025759	360220	Mm.425235	NM_025759	ENSMUSG00000070933	Speer4d	4933431D05Rik|SPEER-4D	spermatogenesis associated glutamate (E)-rich protein 4D	protein-coding	0.005000	0.477612	
mm_54164.1	chr6	23122304	23122504	-	1	NA	NA	NA	10582	NM_013930	30956	Mm.18651	NM_013930	ENSMUSG00000029695	Aass	LKR|LKR/SDH|LOR|LOR/SDH|Lorsdh|SDH	aminoadipate-semialdehyde synthase	protein-coding	0.005000	0.388060	
mm_143600.1	chr17	75551770	75551970	-	1	NA	NA	NA	76	NM_133747	72722	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0.085000	0.616915	
mm_121251.1	chr14	103057425	103057625	+	1	NA	NA	NA	10513	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.015000	0.537313	
mm_132615.1	chr16	38712353	38712553	+	1	NA	NA	NA	582	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.035000	0.442786	-2(TCCTATTAAAGT,-,0.00)
mm_12834.1	chr2	80638716	80638916	+	1	NA	NA	NA	4	NM_027091	69482	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	0.060000	0.552239	
mm_159692.1	chr5	24029978	24030178	-	1	NA	NA	NA	234	NM_001310471	84652	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.085000	0.691542	
mm_68501.1	chr7	111080201	111080401	-	1	NA	NA	NA	2729	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.035000	0.422886	
mm_108645.1	chr12	85956345	85956545	+	1	NA	NA	NA	122596	NM_009368	21809	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.025000	0.512438	
mm_82741.1	chr9	26791827	26792027	-	1	NA	NA	NA	14490	NM_153803	244757	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0.010000	0.547264	
mm_153660.1	chr19	44395228	44395428	-	1	NA	NA	NA	12381	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.422886	
mm_48686.1	chr5	146732839	146733039	-	1	NA	NA	NA	62017	NM_011669	22217	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.010000	0.358209	
mm_36249.1	chr4	63403182	63403382	-	1	NA	NA	NA	163	NM_001045514	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.015000	0.626866	
mm_169599.1	chr15	34367809	34368009	-	1	NA	NA	NA	-10037	NM_001256161	77358	Mm.402759	NM_001256161	ENSMUSG00000094447	9430069I07Rik	-	RIKEN cDNA 9430069I07 gene	protein-coding	0.010000	0.522388	
mm_105531.1	chr11	106300813	106301013	-	1	NA	NA	NA	983	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.030000	0.577114	
mm_50348.1	chr6	48589451	48589651	+	1	NA	NA	NA	106	NM_183309	330305	Mm.123868	NM_183309	ENSMUSG00000052730	Gm5111	A630038D02|EG330305	predicted gene 5111	protein-coding	0.020000	0.477612	
mm_690.1	chr1	40542901	40543101	+	1	NA	NA	NA	27639	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.020000	0.477612	
mm_77675.1	chr8	124949056	124949256	-	1	NA	NA	NA	98	NM_053207	112405	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	0.200000	0.890547	
mm_32889.1	chr4	118964079	118964279	+	1	NA	NA	NA	2212	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.010000	0.522388	
mm_82005.1	chr9	121710254	121710454	+	1	NA	NA	NA	-35	NM_026794	26901	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	0.110000	0.621891	
mm_159423.1	chr3	108210815	108211015	-	1	NA	NA	NA	-388	NM_175183	72522	Mm.187326	NM_175183	ENSMUSG00000048997	Atxn7l2	2610528J18Rik	ataxin 7-like 2	protein-coding	0.045000	0.616915	
mm_115499.1	chr13	3894198	3894398	-	1	NA	NA	NA	-717	NM_001047159	56349	Mm.22261	NM_019671	ENSMUSG00000021215	Net1	Net1a|mNET1	neuroepithelial cell transforming gene 1	protein-coding	0.005000	0.482587	-34(CCCTTTAAAATG,-,0.00),-33(CCTTTAAAATGC,+,0.00),53(GTTTTTATGGCA,+,0.00)
mm_90561.1	chr10	128194582	128194782	+	1	NA	NA	NA	47	NM_001285779	216456	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	0.125000	0.781095	
mm_93702.1	chr10	118097865	118098065	-	1	NA	NA	NA	-43822	NM_001162904	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.010000	0.472637	
mm_142932.1	chr17	55712545	55712745	-	1	NA	NA	NA	-17	NM_028370	72836	Mm.177073	NM_028370	ENSMUSG00000024174	Pot1b	2810458H16Rik	protection of telomeres 1B	protein-coding	0.075000	0.597015	
mm_152741.1	chr19	19035417	19035617	-	1	NA	NA	NA	-34400	NM_001289921	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.010000	0.432836	
mm_149790.1	chr19	23140971	23141171	+	1	NA	NA	NA	-155	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.085000	0.626866	-78(CCTTTTAAATGT,+,0.00)
mm_172866.1	chr9	40804147	40804347	+	1	NA	NA	NA	2974	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.015000	0.482587	
mm_72374.1	chr8	81342435	81342635	+	1	NA	NA	NA	-27	NM_001024617	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.115000	0.751244	
mm_152571.1	chr19	11589988	11590188	-	1	NA	NA	NA	14716	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.010000	0.497512	
mm_43114.1	chr5	124579059	124579259	+	1	NA	NA	NA	11	NM_181410	209357	Mm.185467	NM_181410	ENSMUSG00000029387	Gtf2h3	34kDa|5033417D07Rik|BTF2|BTF2 p34|C730029A10|D5Ertd679e|TFIIH	general transcription factor IIH, polypeptide 3	protein-coding	0.150000	0.671642	
mm_85370.1	chr9	103221463	103221663	-	1	NA	NA	NA	8723	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.005000	0.452736	
mm_91565.1	chr10	40025197	40025397	-	1	NA	NA	NA	-29	NM_144821	215929	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.055000	0.577114	
mm_110157.1	chr12	26456332	26456532	-	1	NA	NA	NA	20	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.010000	0.597015	-33(CAGTTTATAAGC,-,0.00),-31(GTTTATAAGCCC,+,0.00)
mm_147744.1	chr18	61130741	61130941	-	1	NA	NA	NA	13373	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.010000	0.477612	
mm_37281.1	chr4	118967896	118968096	-	1	NA	NA	NA	6029	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.050000	0.577114	
mm_22536.1	chr3	8560242	8560442	+	1	NA	NA	NA	50815	NM_025285	20257	Mm.29580	NM_025285	ENSMUSG00000027500	Stmn2	AI159727|SCG10|Scgn10|Stmb2	stathmin-like 2	protein-coding	0.015000	0.477612	77(TGGTTTAAAAAG,-,0.00)
mm_74336.1	chr8	127069005	127069205	+	1	NA	NA	NA	5049	NM_001309391	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.005000	0.432836	
mm_16404.1	chr2	180034514	180034714	+	1	NA	NA	NA	7850	NM_001289476	26444	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	0.005000	0.407960	
mm_28520.1	chr3	92586748	92586948	-	1	NA	NA	NA	2176	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.005000	0.442786	
mm_40500.1	chr5	57721770	57721970	+	1	NA	NA	NA	3789	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.015000	0.383085	
mm_116660.1	chr13	49195879	49196079	-	1	NA	NA	NA	8432	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.005000	0.567164	
mm_105912.1	chr11	114983817	114984017	-	1	NA	NA	NA	5969	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.005000	0.467662	
mm_49717.1	chr6	34486532	34486732	+	1	NA	NA	NA	10276	NM_007563	12183	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	0.010000	0.363184	74(CCTTTTATATAG,+,0.00),76(TTTTATATAGGG,+,0.00)
mm_113906.1	chr13	49307826	49308026	+	1	NA	NA	NA	1282	NM_015759	30938	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.005000	0.432836	
mm_114630.1	chr13	76188976	76189176	+	1	NA	NA	NA	90342	NM_001081352	218343	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	mKIAA0372	tetratricopeptide repeat domain 37	protein-coding	0.000000	0.308458	
mm_94091.1	chr10	128520642	128520842	-	1	NA	NA	NA	5117	NM_011843	23943	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0.050000	0.572139	
mm_164650.1	chr17	35567341	35567541	+	1	NA	NA	NA	-44	NM_175148	69542	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	0.010000	0.527363	
mm_146949.1	chr18	32555328	32555528	-	1	NA	NA	NA	4606	NM_001347610	71683	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	0.010000	0.462687	
mm_23497.1	chr3	60517051	60517251	+	1	NA	NA	NA	15972	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.308458	
mm_49529.1	chr6	30047970	30048170	+	1	NA	NA	NA	82	NM_001164226	18181	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	0.130000	0.741294	
mm_127903.1	chr15	9508672	9508872	-	1	NA	NA	NA	21104	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.020000	0.402985	
mm_73890.1	chr8	119417286	119417486	+	1	NA	NA	NA	-19776	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.000000	0.552239	
mm_59500.1	chr7	27541579	27541779	+	1	NA	NA	NA	11539	NM_011116	18807	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.035000	0.582090	
mm_148635.1	chr19	5474531	5474731	+	1	NA	NA	NA	-59	NM_021474	58859	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	0.150000	0.835821	
mm_155300.1	chrX	61185617	61185817	+	1	NA	NA	NA	-159	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.010000	0.393035	
mm_4833.1	chr1	186587267	186587467	+	1	NA	NA	NA	-28686	NR_131158	320449	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.020000	0.452736	
mm_125338.1	chr15	39005999	39006199	+	1	NA	NA	NA	-181	NM_001162494	14368	Mm.4769	NM_008056	ENSMUSG00000022297	Fzd6	Fz6	frizzled class receptor 6	protein-coding	0.075000	0.621891	
mm_124080.1	chr14	78644350	78644550	-	1	NA	NA	NA	1	NR_104044	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.015000	0.452736	
mm_154612.1	chrX	7652722	7652922	+	1	NA	NA	NA	-4557	NM_001290624	54630	Mm.232232	NM_175097	ENSMUSG00000031145	Prickle3	Lmo6|Sfc16	prickle planar cell polarity protein 3	protein-coding	0.020000	0.507463	
mm_24574.1	chr3	93444559	93444759	+	1	NA	NA	NA	2329	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.085000	0.671642	
mm_135998.1	chr16	75307877	75308077	-	1	NA	NA	NA	278084	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.015000	0.373134	
mm_158004.1	chrX	95196385	95196585	-	1	NA	NA	NA	-29946	NM_001033329	236915	Mm.44841	NM_001033329	ENSMUSG00000025656	Arhgef9	9630036L12Rik	CDC42 guanine nucleotide exchange factor (GEF) 9	protein-coding	0.065000	0.641791	
mm_40556.1	chr5	59684979	59685179	+	1	NA	NA	NA	300923	NR_040683	71057	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.000000	0.402985	
mm_144366.1	chr18	20473145	20473345	+	1	NA	NA	NA	-37029	NM_030596	13512	Mm.106811	NM_030596	ENSMUSG00000056632	Dsg3	bal	desmoglein 3	protein-coding	0.000000	0.298507	8(TTATTTAAAAGC,-,0.00)
mm_90477.1	chr10	127866403	127866603	+	1	NA	NA	NA	27	NM_145424	216454	Mm.214923	NM_145424	ENSMUSG00000074639	BC089597	CRAD-L	cDNA sequence BC089597	protein-coding	0.015000	0.517413	
mm_40879.1	chr5	74402895	74403095	+	1	NA	NA	NA	128747	NM_178672	212986	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	0.015000	0.457711	
mm_77561.1	chr8	123427552	123427752	-	1	NA	NA	NA	-15304	NM_001253784	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.040000	0.547264	
mm_154407.1	chrM	14549	14749	+	1	NA	NA	NA	NA	NA									0.035000	0.457711	
mm_93517.1	chr10	115287896	115288096	-	1	NA	NA	NA	27595	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.000000	0.318408	
mm_26268.1	chr3	142502955	142503155	+	1	NA	NA	NA	6121	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.010000	0.422886	
mm_61121.1	chr7	55768080	55768280	+	1	NA	NA	NA	-4	NM_001310740	233274	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding	0.005000	0.532338	
mm_168670.1	chr11	92155499	92155699	-	1	NA	NA	NA	-578044	NM_028547	73470	Mm.67677	NM_028547	ENSMUSG00000046755	Kif2b	1700063D03Rik	kinesin family member 2B	protein-coding	0.010000	0.442786	
mm_67513.1	chr7	80803183	80803383	-	1	NA	NA	NA	48	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.115000	0.726368	
mm_46463.1	chr5	105120868	105121068	-	1	NA	NA	NA	-10676	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.005000	0.467662	
mm_115197.1	chr13	108956053	108956253	+	1	NA	NA	NA	301976	NM_011056	238871	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	0.015000	0.313433	
mm_83439.1	chr9	44999257	44999457	-	1	NA	NA	NA	10233	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.010000	0.557214	
mm_6366.1	chr1	72228904	72229104	-	1	NA	NA	NA	-16697	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.010000	0.417910	
mm_166031.1	chr4	126495748	126495948	+	1	NA	NA	NA	-27265	NM_153403	236511	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	0.005000	0.452736	
mm_39258.1	chr5	3543773	3543973	+	1	NA	NA	NA	40	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.130000	0.696517	
mm_98519.1	chr11	94952611	94952811	+	1	NA	NA	NA	-14882	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.005000	0.363184	
mm_146462.1	chr18	86710961	86711161	+	1	NA	NA	NA	-49	NM_001302356	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.025000	0.328358	
mm_107667.1	chr12	53248129	53248329	+	1	NA	NA	NA	-448	NM_013780	27386	Mm.247044	NM_013780	ENSMUSG00000021010	Npas3	4930423H22Rik|bHLHe12	neuronal PAS domain protein 3	protein-coding	0.050000	0.636816	
mm_167162.1	chr7	135698879	135699079	-	1	NA	NA	NA	17400	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.000000	0.407960	
mm_21265.1	chr2	156781485	156781685	-	1	NA	NA	NA	6121	NM_172118	98932	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0.005000	0.517413	
mm_109617.1	chr12	112761537	112761737	+	1	NA	NA	NA	982	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.015000	0.562189	
mm_40982.1	chr5	77205261	77205461	+	1	NA	NA	NA	5844	NM_001289767	69982	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0.030000	0.497512	
mm_70975.1	chr8	27143075	27143275	+	1	NA	NA	NA	265	NR_045840	71082	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.050000	0.562189	
mm_166888.1	chr7	28107224	28107424	+	1	NA	NA	NA	-22142	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.562189	
mm_54661.1	chr6	39164933	39165133	-	1	NA	NA	NA	41740	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.000000	0.388060	
mm_122331.1	chr14	37109971	37110171	-	1	NA	NA	NA	30	NM_001206684	70045	Mm.271619	NM_001206684	ENSMUSG00000096001	2610528A11Rik	AW494830	RIKEN cDNA 2610528A11 gene	protein-coding	0.025000	0.532338	-60(CCTTATAAATGT,+,0.00)
mm_136247.1	chr16	90937111	90937311	-	1	NA	NA	NA	-2362	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.005000	0.393035	
mm_150300.1	chr19	34560664	34560864	+	1	NA	NA	NA	10070	NM_008332	15958	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0.000000	0.502488	-16(CACTATAAAAGG,-,0.00)
mm_19121.1	chr2	80038910	80039110	-	1	NA	NA	NA	89961	NM_016744	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.010000	0.407960	74(CTGTTTTAAAGA,-,0.00)
mm_92378.1	chr10	76416768	76416968	-	1	NA	NA	NA	26044	NM_008787	18541	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	0.030000	0.502488	
mm_148711.1	chr19	5802321	5802521	+	1	NA	NA	NA	251	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.010000	0.343284	-79(CCTTTTAGAACT,+,0.00)
mm_134049.1	chr16	5255844	5256044	-	1	NA	NA	NA	12	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.095000	0.681592	
mm_135890.1	chr16	64852455	64852655	-	1	NA	NA	NA	470	NM_178647	106143	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.175000	0.860697	
mm_54684.1	chr6	39420157	39420357	-	1	NA	NA	NA	112	NM_018810	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.080000	0.656716	
mm_158934.1	chr1	73937170	73937370	-	1	NA	NA	NA	-72804	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.015000	0.592040	
mm_604.1	chr1	39901641	39901841	+	1	NA	NA	NA	828	NM_008696	26921	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.025000	0.437811	15(GGCCTTAAAAGA,-,0.00),16(GCCTTAAAAGAC,+,0.00),17(CCTTAAAAGACC,+,0.00)
mm_149839.1	chr19	24999475	24999675	+	1	NA	NA	NA	46	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.160000	0.771144	
mm_133687.1	chr16	92498513	92498713	+	1	NA	NA	NA	466	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	0.080000	0.716418	
mm_144355.1	chr18	15832673	15832873	+	1	NA	NA	NA	-114727	NM_199055	71367	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0.030000	0.442786	
mm_94165.1	chr10	128747632	128747832	-	1	NA	NA	NA	-147	NM_030100	78428	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	0.045000	0.532338	
mm_63384.1	chr7	127214125	127214325	+	1	NA	NA	NA	2617	NM_016754	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.025000	0.492537	
mm_8505.1	chr1	154117536	154117736	-	1	NA	NA	NA	-83551	NM_001204908	100503355	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	ENSMUSG00000066797|Gm10178|Gm203	zinc finger protein 648	protein-coding	0.020000	0.557214	
mm_98586.1	chr11	95751262	95751462	+	1	NA	NA	NA	2295	NM_201609	268469	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	0.005000	0.393035	
mm_132420.1	chr16	35156427	35156627	+	1	NA	NA	NA	891	NM_001012765	224129	Mm.41137	NM_001012765	ENSMUSG00000022840	Adcy5	AW121902|Ac5	adenylate cyclase 5	protein-coding	0.150000	0.800995	
mm_30650.1	chr4	8840388	8840588	+	1	NA	NA	NA	150082	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.015000	0.477612	
mm_111256.1	chr12	84970749	84970949	-	1	NA	NA	NA	37	NM_178065	68497	Mm.24446	NM_178065	ENSMUSG00000042350	Arel1	1110018G07Rik|AI649076|AW610792|Kiaa0317|mKIAA0317	apoptosis resistant E3 ubiquitin protein ligase 1	protein-coding	0.090000	0.582090	
mm_61130.1	chr7	55885886	55886086	+	1	NA	NA	NA	43915	NM_001164661	20430	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.005000	0.497512	
mm_169863.1	chr16	3383192	3383392	+	1	NA	NA	NA	-209106	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.015000	0.447761	-32(GGTTATAAAAGG,-,0.00)
mm_162495.1	chr1	136685140	136685340	-	1	NA	NA	NA	1611	NR_045325	100503460	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.025000	0.492537	
mm_105427.1	chr11	103809978	103810178	-	1	NA	NA	NA	35903	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding	0.185000	0.791045	
mm_11581.1	chr2	32966860	32967060	+	1	NA	NA	NA	3659	NR_002898	104367	Mm.250030	NR_002898	ENSMUSG00000065124	Snora65	MBII-351|Rnu65	small nucleolar RNA, H/ACA box 65	snoRNA	0.090000	0.621891	
mm_16025.1	chr2	167538101	167538301	+	1	NA	NA	NA	6	NM_011427	20613	Mm.2093	NM_011427	ENSMUSG00000042821	Snai1	Sna|Sna1|Snail|Snail1	snail family zinc finger 1	protein-coding	0.090000	0.641791	
mm_129638.1	chr15	80254912	80255112	-	1	NA	NA	NA	-172	NM_001287180	11911	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	0.050000	0.587065	
mm_136450.1	chr16	94995048	94995248	-	1	NA	NA	NA	2548	NM_001025584	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.005000	0.517413	
mm_78383.1	chr9	28185352	28185552	+	1	NA	NA	NA	394183	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.005000	0.393035	
mm_151462.1	chr19	58606266	58606466	+	1	NA	NA	NA	37	NR_038136	69055	Mm.396318	NR_038136	ENSMUSG00000100001	1810007D17Rik	-	RIKEN cDNA 1810007D17 gene	ncRNA	0.025000	0.482587	
mm_4337.1	chr1	171855984	171856184	+	1	NA	NA	NA	16387	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.010000	0.462687	
mm_114111.1	chr13	54913135	54913335	+	1	NA	NA	NA	-36176	NM_001311128	107448	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	0.030000	0.601990	
mm_34676.1	chr4	150935649	150935849	+	1	NA	NA	NA	7750	NM_001077509	21942	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.015000	0.472637	
mm_146155.1	chr18	75001782	75001982	+	1	NA	NA	NA	814	NR_028552	100217457		NR_028552	ENSMUSG00000064871	Snord58b	MBII-199	small nucleolar RNA, C/D box 58B	snoRNA	0.025000	0.457711	
mm_30759.1	chr4	15269521	15269721	+	1	NA	NA	NA	3801	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.020000	0.467662	
mm_14277.1	chr2	128769121	128769321	+	1	NA	NA	NA	-49082	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.000000	0.427861	
mm_160762.1	chr10	93208080	93208280	+	1	NA	NA	NA	45395	NR_035452	100316689		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	0.015000	0.378109	
mm_74261.1	chr8	124897789	124897989	+	1	NA	NA	NA	3	NM_001111141	244666	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	0.135000	0.696517	-36(GCGTCTTAAGGC,-,0.00)
mm_159370.1	chr3	88653083	88653283	-	1	NA	NA	NA	-41	NM_181817	242093	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0.040000	0.601990	
mm_2702.1	chr1	127978243	127978443	+	1	NA	NA	NA	109570	NM_178690	226407	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0.000000	0.407960	
mm_124835.1	chr15	9203559	9203759	+	1	NA	NA	NA	-48234	NM_001285980	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.020000	0.522388	
mm_21029.1	chr2	152414726	152414926	-	1	NA	NA	NA	218	NM_175126	67917	Mm.391810	NM_175126	ENSMUSG00000074682	Zcchc3	2810406K24Rik	zinc finger, CCHC domain containing 3	protein-coding	0.115000	0.721393	
mm_159928.1	chr6	61180319	61180519	+	1	NA	NA	NA	94	NM_183310	232035	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding	0.170000	0.805970	
mm_117913.1	chr13	99431135	99431335	-	1	NA	NA	NA	-18409	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.020000	0.487562	
mm_83352.1	chr9	44344081	44344281	-	1	NA	NA	NA	47	NM_013551	15288	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	0.075000	0.671642	
mm_93854.1	chr10	122047709	122047909	-	1	NA	NA	NA	-494	NM_001081037	117600	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.180000	0.805970	
mm_171744.1	chr4	9725013	9725213	+	1	NA	NA	NA	-45472	NR_030693	320152	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	0.010000	0.507463	-31(CCTTTTATAAGT,+,0.00)
mm_134577.1	chr16	20405396	20405596	-	1	NA	NA	NA	20898	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.010000	0.502488	
mm_63311.1	chr7	126862499	126862699	+	1	NA	NA	NA	627	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	0.055000	0.542289	
mm_10918.1	chr2	25402980	25403180	+	1	NA	NA	NA	30	NM_008721	18146	Mm.1131	NM_008721	ENSMUSG00000015094	Npdc1	AI314472|NPDC-1	neural proliferation, differentiation and control 1	protein-coding	0.085000	0.671642	
mm_3538.1	chr1	150393370	150393570	+	1	NA	NA	NA	-415	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.140000	0.706468	
mm_164703.1	chr17	51755082	51755282	-	1	NA	NA	NA	56872	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.000000	0.333333	
mm_66194.1	chr7	34221576	34221776	-	1	NA	NA	NA	8660	NM_008155	14751	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	0.030000	0.527363	
mm_111962.1	chr12	109600238	109600438	-	1	NA	NA	NA	-3607	NR_028261	75745	Mm.293263	NR_028261		Rian	5530401N18Rik|C130089L09Rik|Meg8	RNA imprinted and accumulated in nucleus	ncRNA	0.030000	0.572139	
mm_163191.1	chr11	94991072	94991272	-	1	NA	NA	NA	-40	NM_172261	217124	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.125000	0.756219	
mm_128150.1	chr15	31735323	31735523	-	1	NA	NA	NA	133307	NM_026546	68073	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.000000	0.522388	
mm_10579.1	chr2	18129719	18129919	+	1	NA	NA	NA	65234	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.000000	0.398010	
mm_160144.1	chr7	36698021	36698221	+	1	NA	NA	NA	3	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.150000	0.825871	
mm_15526.1	chr2	158382516	158382716	+	1	NA	NA	NA	6978	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.030000	0.452736	
mm_1456.1	chr1	67230717	67230917	+	1	NA	NA	NA	107790	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.000000	0.308458	13(ACTTATATAGTC,+,0.00)
mm_52010.1	chr6	93241885	93242085	+	1	NA	NA	NA	301403	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.010000	0.402985	-94(TGGTCTAAAGGG,-,0.00)
mm_98622.1	chr11	95858791	95858991	+	1	NA	NA	NA	74	NR_045187	73906	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	0.085000	0.562189	
mm_48705.1	chr5	147076424	147076624	-	1	NA	NA	NA	48	NM_080795	140887	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	0.120000	0.681592	
mm_111346.1	chr12	86892455	86892655	-	1	NA	NA	NA	-7741	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.025000	0.517413	-83(CCTTTTAAACTA,+,0.00)
mm_67127.1	chr7	70366346	70366546	-	1	NA	NA	NA	300	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.025000	0.497512	
mm_102729.1	chr11	67243362	67243562	-	1	NA	NA	NA	5650	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.010000	0.457711	
mm_164480.1	chr16	73794041	73794241	-	1	NA	NA	NA	547926	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.000000	0.388060	
mm_81354.1	chr9	108649716	108649916	+	1	NA	NA	NA	-436	NM_011790	23807	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.030000	0.427861	
mm_106107.1	chr11	116306583	116306783	-	1	NA	NA	NA	55	NM_016857	53413	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	0.090000	0.656716	
mm_54652.1	chr6	39048957	39049157	-	1	NA	NA	NA	18529	NR_040523	69986	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.020000	0.462687	
mm_131679.1	chr16	20674164	20674364	+	1	NA	NA	NA	1537	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.035000	0.601990	
mm_14313.1	chr2	129205108	129205308	+	1	NA	NA	NA	6435	NM_001159593	20515	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.010000	0.393035	
mm_28913.1	chr3	98852853	98853053	-	1	NA	NA	NA	6841	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.005000	0.457711	
mm_26348.1	chr3	142547666	142547866	+	1	NA	NA	NA	-12286	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.000000	0.437811	
mm_114708.1	chr13	83572248	83572448	+	1	NA	NA	NA	-1259	NM_001347577	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.015000	0.497512	
mm_49216.1	chr6	15755584	15755784	+	1	NA	NA	NA	35023	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.000000	0.373134	
mm_78264.1	chr9	21936987	21937187	+	1	NA	NA	NA	77	NM_001290299	235044	Mm.277521	NM_144935	ENSMUSG00000040563	Plppr2	Lppr2|PRG-4	phospholipid phosphatase related 2	protein-coding	0.105000	0.676617	
mm_18507.1	chr2	62615589	62615789	-	1	NA	NA	NA	30566	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.000000	0.328358	
mm_1704.1	chr1	75192087	75192287	+	1	NA	NA	NA	27	NR_051999	52231	Mm.259326	NM_026187	ENSMUSG00000026199	Ankzf1	1300008P06Rik|2810025E10Rik|D1Ertd161e	ankyrin repeat and zinc finger domain containing 1	protein-coding	0.075000	0.592040	
mm_78088.1	chr9	18194955	18195155	+	1	NA	NA	NA	-97212	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.025000	0.477612	
mm_130008.1	chr15	86475000	86475200	-	1	NA	NA	NA	260641	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.005000	0.512438	
mm_149267.1	chr19	10577387	10577587	+	1	NA	NA	NA	-101	NR_126092	72982	Mm.391194	NM_028411	ENSMUSG00000024666	Tmem138	1700113I01Rik|2900055D14Rik	transmembrane protein 138	protein-coding	0.050000	0.611940	-67(GCCTATAAAAAT,-,0.00)
mm_36320.1	chr4	70307211	70307411	-	1	NA	NA	NA	103124	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.005000	0.467662	57(GGACTTAAAAGC,-,0.00)
mm_7484.1	chr1	121307860	121308060	-	1	NA	NA	NA	19718	NM_001271531	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.000000	0.358209	
mm_85764.1	chr9	108854466	108854666	-	1	NA	NA	NA	523	NM_134420	171429	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.070000	0.666667	
mm_111646.1	chr12	102704838	102705038	-	1	NA	NA	NA	-69	NM_172584	217837	Mm.482192	NM_172584	ENSMUSG00000057963	Itpk1	BC031182	inositol 1,3,4-triphosphate 5/6 kinase	protein-coding	0.185000	0.835821	
mm_76021.1	chr8	75039720	75039920	-	1	NA	NA	NA	6134	NM_011622	21968	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.005000	0.487562	
mm_113617.1	chr13	41569201	41569401	+	1	NA	NA	NA	-36915	NM_001163572	621976	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.020000	0.502488	
mm_38065.1	chr4	134093480	134093680	-	1	NA	NA	NA	1493	NM_013706	23833	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	0.035000	0.532338	
mm_45763.1	chr5	86906847	86907047	-	1	NA	NA	NA	-10	NM_153598	100727	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding	0.000000	0.467662	
mm_42850.1	chr5	122209781	122209981	+	1	NA	NA	NA	152	NM_001042489	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.020000	0.611940	
mm_96412.1	chr11	67254682	67254882	+	1	NA	NA	NA	16970	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.040000	0.597015	
mm_59650.1	chr7	28169617	28169817	+	1	NA	NA	NA	-31	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.140000	0.656716	
mm_20254.1	chr2	126597917	126598117	-	1	NA	NA	NA	20661	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.025000	0.522388	
mm_26670.1	chr3	154711296	154711496	+	1	NA	NA	NA	263	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.005000	0.412935	
mm_91515.1	chr10	37138474	37138674	-	1	NA	NA	NA	352	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.065000	0.626866	
mm_160285.1	chr7	125672698	125672898	-	1	NA	NA	NA	34890	NM_207239	233863	Mm.294173	NM_207239	ENSMUSG00000032777	Gtf3c1	-	general transcription factor III C 1	protein-coding	0.020000	0.502488	
mm_168566.1	chr11	69670072	69670272	-	1	NA	NA	NA	2251	NM_144958	13681	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0.005000	0.452736	
mm_94890.1	chr11	28730377	28730577	+	1	NA	NA	NA	-15714	NR_030419	735308		NR_030419	ENSMUSG00000076318	Mir216b	Mirn216b|mir-216b	microRNA 216b	ncRNA	0.000000	0.407960	
mm_111953.1	chr12	109545714	109545914	-	1	NA	NA	NA	416	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.005000	0.333333	21(TGGTTTAAAAGG,-,0.00),23(GTTTAAAAGGCC,+,0.00)
mm_79008.1	chr9	45431262	45431462	+	1	NA	NA	NA	-130	NR_040732	74602	Mm.394117	NR_040732	ENSMUSG00000097074	4833428L15Rik	-	RIKEN cDNA 4833428L15 gene	ncRNA	0.050000	0.606965	
mm_142949.1	chr17	56109662	56109862	-	1	NA	NA	NA	40	NM_020568	57435	Mm.12966	NM_020568	ENSMUSG00000002831	Plin4	S3-12|mKIAA1881	perilipin 4	protein-coding	0.025000	0.661692	-57(GACCCTATAAGG,-,0.00),-55(CCCTATAAGGCT,+,0.00)
mm_77556.1	chr8	123318446	123318646	-	1	NA	NA	NA	30	NM_016925	14087	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	0.075000	0.666667	
mm_136777.1	chr17	10319813	10320013	+	1	NA	NA	NA	-6	NR_037588	100526796	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	0.145000	0.776119	
mm_30828.1	chr4	21874436	21874636	+	1	NA	NA	NA	-5139	NM_172687	230027	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	0.025000	0.412935	
mm_170075.1	chr1	7335643	7335843	-	1	NA	NA	NA	246823	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.025000	0.417910	
mm_15553.1	chr2	158436933	158437133	+	1	NA	NA	NA	27180	NM_001291138	228850	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0.025000	0.457711	
mm_38149.1	chr4	134914857	134915057	-	1	NA	NA	NA	-41	NM_027935	71817	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0.105000	0.636816	
mm_36918.1	chr4	108118384	108118584	-	1	NA	NA	NA	63	NM_011327	20280	Mm.379011	NM_011327	ENSMUSG00000028603	Scp2	AA409774|AA409893|C76618|C79031|NSL-TP|SCP-2|SCP-X|SCPX|ns-LTP	sterol carrier protein 2, liver	protein-coding	0.110000	0.661692	
mm_156392.1	chrX	139800887	139801087	+	1	NA	NA	NA	179	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.040000	0.517413	87(GTTTTTAAACCT,+,0.00)
mm_40336.1	chr5	43913049	43913249	+	1	NA	NA	NA	44340	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.025000	0.482587	
mm_53975.1	chr6	6578468	6578668	-	1	NA	NA	NA	90	NM_009169	20422	Mm.2469	NM_009169	ENSMUSG00000042541	Shfm1	DSS1|Shfdg1|Shfg	split hand/foot malformation (ectrodactyly) type 1	protein-coding	0.120000	0.621891	
mm_86085.1	chr9	114844031	114844231	-	1	NA	NA	NA	21	NM_027294	70031	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	0.090000	0.711443	
mm_43445.1	chr5	136110452	136110652	+	1	NA	NA	NA	5030	NR_106002	102465626		NR_106002	ENSMUSG00000099003	Mir7035	Gm27661|mmu-mir-7035	microRNA 7035	ncRNA	0.005000	0.492537	
mm_3521.1	chr1	150107520	150107720	+	1	NA	NA	NA	7589	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.318408	
mm_95360.1	chr11	48872459	48872659	+	1	NA	NA	NA	-1213	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding	0.000000	0.442786	
mm_142614.1	chr17	46857632	46857832	-	1	NA	NA	NA	-26319	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.075000	0.616915	-35(GCCTTTTAATGA,-,0.00)
mm_73107.1	chr8	94666606	94666806	+	1	NA	NA	NA	106	NM_024191	107566	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0.140000	0.776119	
mm_171933.1	chr5	64159881	64160081	+	1	NA	NA	NA	-279	NM_019636	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.080000	0.711443	
mm_102399.1	chr11	59002296	59002496	-	1	NA	NA	NA	24303	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.010000	0.557214	
mm_9057.1	chr1	167350265	167350465	-	1	NA	NA	NA	374	NM_019993	56752	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.125000	0.706468	
mm_170438.1	chr18	80022418	80022618	+	1	NA	NA	NA	-24377	NM_053117	93737	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0.025000	0.547264	
mm_50163.1	chr6	41547688	41547888	+	1	NA	NA	NA	26012	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.517413	
mm_85108.1	chr9	95404452	95404652	-	1	NA	NA	NA	2718	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.010000	0.432836	
mm_46558.1	chr5	106696702	106696902	-	1	NA	NA	NA	28	NM_026856	52397	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.105000	0.706468	
mm_70055.1	chr7	142651242	142651442	-	1	NA	NA	NA	3654	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.005000	0.547264	
mm_88359.1	chr10	75936214	75936414	+	1	NA	NA	NA	741	NM_175329	103172	Mm.333849	NM_175329	ENSMUSG00000049422	Chchd10	1620401E04Rik|AI267078|Ndg2	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding	0.070000	0.686567	
mm_115250.1	chr13	110396846	110397046	+	1	NA	NA	NA	1902	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.000000	0.457711	
mm_18564.1	chr2	65239009	65239209	-	1	NA	NA	NA	-483	NM_027225	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.115000	0.711443	
mm_11099.1	chr2	28032682	28032882	+	1	NA	NA	NA	52096	NM_010190	14134	Mm.182935	NM_010190	ENSMUSG00000026835	Fcnb	Fcn2	ficolin B	protein-coding	0.025000	0.532338	
mm_167772.1	chr9	111090521	111090721	+	1	NA	NA	NA	-27490	NM_027742	71268	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.010000	0.467662	
mm_128810.1	chr15	66978308	66978508	-	1	NA	NA	NA	-8767	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.015000	0.402985	
mm_26305.1	chr3	142511471	142511671	+	1	NA	NA	NA	14637	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.000000	0.383085	
mm_60824.1	chr7	45705425	45705625	+	1	NA	NA	NA	278	NM_016974	13170	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.060000	0.572139	
mm_86359.1	chr9	123717504	123717704	-	1	NA	NA	NA	-47	NM_033322	93730	Mm.378263	NM_033322	ENSMUSG00000025245	Lztfl1	5530402H04Rik|6130400H19Rik|AI414725|AW048545	leucine zipper transcription factor-like 1	protein-coding	0.090000	0.606965	
mm_43719.1	chr5	139423097	139423297	+	1	NA	NA	NA	18	NM_029771	76854	Mm.389706	NM_029771	ENSMUSG00000053647	Gper1	6330420K13Rik|CMKRL2|Ceprl|FEG-1|GPCR-Br|Gper|Gpr30	G protein-coupled estrogen receptor 1	protein-coding	0.030000	0.636816	-97(TGGCCTTAAAGG,-,0.00),-96(GGCCTTAAAGGG,-,0.00),-94(CCTTAAAGGGAG,+,0.00),-50(GTCTATAAAGGA,-,0.00)
mm_139304.1	chr17	48347751	48347951	+	1	NA	NA	NA	1450	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.015000	0.482587	
mm_97080.1	chr11	73009710	73009910	+	1	NA	NA	NA	-9198	NM_018883	55984	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	0.020000	0.592040	
mm_127743.1	chr15	103335680	103335880	+	1	NA	NA	NA	4306	NM_013866	29813	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.010000	0.522388	
mm_161618.1	chr16	56024275	56024475	-	1	NA	NA	NA	5342	NM_001024622	76302	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	0.025000	0.452736	
mm_67390.1	chr7	79843179	79843379	-	1	NA	NA	NA	-927	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.030000	0.542289	
mm_53578.1	chr6	137410749	137410949	+	1	NA	NA	NA	128	NM_001164403	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.015000	0.482587	
mm_125766.1	chr15	74516646	74516846	+	1	NA	NA	NA	550	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0.135000	0.741294	
mm_20750.1	chr2	140170449	140170649	-	1	NA	NA	NA	9	NM_001081090	66580	Mm.21228	NM_001081090	ENSMUSG00000045624	Esf1	2610101J03Rik|ABTAP|AW545818|C79684	ESF1 nucleolar pre-rRNA processing protein homolog	protein-coding	0.075000	0.587065	
mm_132497.1	chr16	36947930	36948130	+	1	NA	NA	NA	13047	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.010000	0.402985	
mm_18235.1	chr2	51973003	51973203	-	1	NA	NA	NA	105	NM_001141949	64685	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0.030000	0.467662	
mm_23100.1	chr3	37312445	37312645	+	1	NA	NA	NA	-9	NM_001008502	241950	Mm.32171	NM_001008502	ENSMUSG00000051444	Bbs12	Gm1805|Gm407|Gm721	Bardet-Biedl syndrome 12 (human)	protein-coding	0.090000	0.666667	
mm_133101.1	chr16	64911097	64911297	+	1	NA	NA	NA	59112	NM_178647	106143	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.005000	0.477612	
mm_79016.1	chr9	45839848	45840048	+	1	NA	NA	NA	1403	NM_011792	23821	Mm.24044	NM_011792	ENSMUSG00000032086	Bace1	ASP2|Bace|C76936	beta-site APP cleaving enzyme 1	protein-coding	0.010000	0.542289	
mm_142368.1	chr17	44607410	44607610	-	1	NA	NA	NA	128666	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.025000	0.557214	
mm_44201.1	chr5	3647960	3648160	-	1	NA	NA	NA	-124	NM_026033	67210	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|ENSMUSG00000073241|Odag	GATA zinc finger domain containing 1	protein-coding	0.060000	0.701493	
mm_8812.1	chr1	161897236	161897436	-	1	NA	NA	NA	-20675	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.020000	0.402985	
mm_93125.1	chr10	91181343	91181543	-	1	NA	NA	NA	-9824	NM_001080130	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.085000	0.507463	52(CTTTTTAAATTC,+,0.00)
mm_51282.1	chr6	72181198	72181398	+	1	NA	NA	NA	54279	NM_153778	71093	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0.010000	0.437811	
mm_58294.1	chr6	145865277	145865477	-	1	NA	NA	NA	43	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.100000	0.626866	
mm_92047.1	chr10	62497172	62497372	-	1	NA	NA	NA	-10467	NM_133672	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.000000	0.373134	
mm_162102.1	chrX	37901630	37901830	-	1	NA	NA	NA	40	NM_023894	104384	Mm.156958	NM_023894	ENSMUSG00000068048	Rhox9	1600026O01Rik|Gpbox|Psx2	reproductive homeobox 9	protein-coding	0.060000	0.547264	
mm_118046.1	chr13	101701805	101702005	-	1	NA	NA	NA	-9275	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.015000	0.442786	
mm_132053.1	chr16	29579237	29579437	+	1	NA	NA	NA	3	NM_001199177	74143	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	0.075000	0.631841	
mm_82803.1	chr9	29820851	29821051	-	1	NA	NA	NA	142178	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.010000	0.417910	
mm_67751.1	chr7	92637013	92637213	-	1	NA	NA	NA	29	NM_028665	73845	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	0.125000	0.636816	
mm_44400.1	chr5	17835923	17836123	-	1	NA	NA	NA	-127	NM_007643	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.015000	0.467662	
mm_72716.1	chr8	85021885	85022085	+	1	NA	NA	NA	3293	NM_019652	56495	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	0.015000	0.467662	
mm_154161.1	chr19	58455855	58456055	-	1	NA	NA	NA	-557	NM_010279	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.060000	0.557214	
mm_74736.1	chr8	18741414	18741614	-	1	NA	NA	NA	48	NM_007426	11601	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	0.020000	0.517413	
mm_100069.1	chr11	115419232	115419432	+	1	NA	NA	NA	587	NM_027862	71679	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	0.015000	0.442786	
mm_54660.1	chr6	39118132	39118332	-	1	NA	NA	NA	117	NM_172893	243771	Mm.268462	NM_172893	ENSMUSG00000038507	Parp12	9930021O16|AA409132|AA536654|ARTD12|PARP-12|Zc3hdc1	poly (ADP-ribose) polymerase family, member 12	protein-coding	0.110000	0.706468	
mm_96139.1	chr11	60935525	60935725	+	1	NA	NA	NA	3568	NM_008928	26397	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0.010000	0.577114	-31(GCTTAAAGGGGC,+,0.00)
mm_41795.1	chr5	103753565	103753765	+	1	NA	NA	NA	-497	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.050000	0.537313	
mm_39887.1	chr5	31116586	31116786	+	1	NA	NA	NA	74	NM_021447	58522	Mm.143796	NM_021447	ENSMUSG00000062077	Trim54	4930486E09Rik|4930566I02Rik|MURF|MURF-3|MuRF3|Rnf30	tripartite motif-containing 54	protein-coding	0.005000	0.532338	
mm_86792.1	chr10	20205261	20205461	+	1	NA	NA	NA	-3078	NM_001101561	621697	Mm.440587	NM_001101561		Rpl32l	EG621697|Gm6251	ribosomal protein L32-like	protein-coding	0.035000	0.532338	
mm_94805.1	chr11	23008360	23008560	+	1	NA	NA	NA	-4927	NM_028672	73873	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0.080000	0.661692	
mm_169593.1	chr15	30447549	30447749	-	1	NA	NA	NA	275056	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.060000	0.646766	
mm_33614.1	chr4	132611498	132611698	+	1	NA	NA	NA	-27448	NM_210071	14050	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0.025000	0.532338	
mm_38419.1	chr4	139186472	139186672	-	1	NA	NA	NA	-5917	NR_033543	100038595	Mm.385206	NR_033543	ENSMUSG00000073739	Gm16287	ENSMUSG00000073739|OTTMUSG00000009902|OTTMUSG00000033208	predicted gene 16287	ncRNA	0.010000	0.517413	
mm_5914.1	chr1	55027292	55027492	-	1	NA	NA	NA	86	NM_031179	81898	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	0.120000	0.646766	
mm_142686.1	chr17	47734221	47734421	-	1	NA	NA	NA	-2716	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.025000	0.597015	
mm_2019.1	chr1	87127950	87128150	+	1	NA	NA	NA	3042	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.005000	0.592040	
mm_90417.1	chr10	127471714	127471914	+	1	NA	NA	NA	-29903	NM_177707	237611	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0.035000	0.626866	
mm_95596.1	chr11	53332435	53332635	+	1	NA	NA	NA	7846	NM_026479	67966	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0.035000	0.557214	
mm_31732.1	chr4	63018245	63018445	+	1	NA	NA	NA	52771	NM_028326	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.000000	0.432836	
mm_23835.1	chr3	82357966	82358166	+	1	NA	NA	NA	-6	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0.065000	0.621891	
mm_24690.1	chr3	95004879	95005079	+	1	NA	NA	NA	811	NR_105980	102465613		NR_105980	ENSMUSG00000099033	Mir7013	Gm27488|mmu-mir-7013	microRNA 7013	ncRNA	0.000000	0.477612	-100(CCCCTTTAAAAC,-,0.00),-98(CCTTTAAAACAT,+,0.00)
mm_109472.1	chr12	111421352	111421552	+	1	NA	NA	NA	4007	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.010000	0.557214	
mm_13503.1	chr2	107955933	107956133	+	1	NA	NA	NA	665444	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding	0.020000	0.482587	-42(GTGCATTTAAGC,-,0.00)
mm_158830.1	chrX	168123223	168123423	-	1	NA	NA	NA	-326	NM_001290427	333605	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	0.065000	0.701493	
mm_74919.1	chr8	25556043	25556243	-	1	NA	NA	NA	-60	NR_110510	102633315	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	OTTMUSG00000031030	predicted gene 16159	ncRNA	0.025000	0.522388	
mm_59841.1	chr7	29534311	29534511	+	1	NA	NA	NA	-28951	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.005000	0.437811	54(GGACATAAAAGG,-,0.00)
mm_3733.1	chr1	155098190	155098390	+	1	NA	NA	NA	1346	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.045000	0.542289	
mm_8327.1	chr1	149946263	149946463	-	1	NA	NA	NA	14927	NM_008869	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.000000	0.422886	
mm_49277.1	chr6	17636990	17637190	+	1	NA	NA	NA	-8	NM_007604	12343	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.130000	0.736318	
mm_137744.1	chr17	29370512	29370712	+	1	NA	NA	NA	9698	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.005000	0.502488	
mm_155366.1	chrX	71118846	71119046	+	1	NA	NA	NA	68690	NM_001081354	333639	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	0.000000	0.517413	
mm_114286.1	chr13	58402618	58402818	+	1	NA	NA	NA	121	NM_001168248	74386	Mm.85289	NM_028904	ENSMUSG00000035367	Rmi1	4932432N11Rik|C79893	RecQ mediated genome instability 1	protein-coding	0.125000	0.701493	
mm_68979.1	chr7	126589165	126589365	-	1	NA	NA	NA	-3448	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.030000	0.601990	
mm_167506.1	chr9	13310710	13310910	+	1	NA	NA	NA	63854	NM_025534	66396	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.000000	0.417910	
mm_64910.1	chr7	16204030	16204230	-	1	NA	NA	NA	17863	NM_001285931	71723	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	0.005000	0.577114	
mm_125637.1	chr15	62060680	62060880	+	1	NA	NA	NA	21523	NR_132746	19296	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	plasmacytoma variant translocation 1	ncRNA	0.020000	0.417910	
mm_134752.1	chr16	23157158	23157358	-	1	NA	NA	NA	10722	NM_009605	11450	Mm.3969	NM_009605	ENSMUSG00000022878	Adipoq	30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1	adiponectin, C1Q and collagen domain containing	protein-coding	0.045000	0.502488	
mm_27881.1	chr3	79173117	79173317	-	1	NA	NA	NA	-27342	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.050000	0.502488	
mm_156869.1	chrX	164442085	164442285	+	1	NA	NA	NA	5191	NM_001313737	68854	Mm.33225	NM_026853	ENSMUSG00000031382	Asb11	1110067L12Rik|1600009D24Rik	ankyrin repeat and SOCS box-containing 11	protein-coding	0.020000	0.527363	-46(CATTTTAAAGAC,+,0.00)
mm_94092.1	chr10	128522373	128522573	-	1	NA	NA	NA	3386	NM_011843	23943	Mm.66056	NM_011843	ENSMUSG00000025366	Esyt1	Fam62a|Mbc2|vp115	extended synaptotagmin-like protein 1	protein-coding	0.020000	0.577114	
mm_145526.1	chr18	60636072	60636272	+	1	NA	NA	NA	-11867	NM_177340	104027	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	0.010000	0.487562	
mm_153397.1	chr19	40487454	40487654	-	1	NA	NA	NA	26182	NM_178362	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.015000	0.407960	
mm_160596.1	chr9	72925471	72925671	+	1	NA	NA	NA	-79	NM_028116	72135	Mm.273605	NM_028116	ENSMUSG00000034910	Pygo1	2600014C22Rik	pygopus 1	protein-coding	0.175000	0.845771	
mm_118794.1	chr14	24293358	24293558	+	1	NA	NA	NA	94	NM_001033214	105418	Mm.2077	NM_001033214	ENSMUSG00000038925	E330034G19Rik	AA415275|Zpac	RIKEN cDNA E330034G19 gene	protein-coding	0.005000	0.477612	
mm_135636.1	chr16	52346649	52346849	-	1	NA	NA	NA	106332	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.343284	
mm_166548.1	chr6	39653702	39653902	+	1	NA	NA	NA	61219	NM_026612	68198	Mm.29415	NM_026612	ENSMUSG00000002416	Ndufb2	1810011O01Rik|8kDa|AGGG|AI325567|CI-AGGG	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2	protein-coding	0.025000	0.477612	
mm_31823.1	chr4	67930753	67930953	+	1	NA	NA	NA	1023544	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.045000	0.547264	
mm_20383.1	chr2	128943868	128944068	-	1	NA	NA	NA	52	NM_020594	57432	Mm.11675	NM_020594	ENSMUSG00000027387	Zc3h8	AU020882|E130108N08Rik|Fliz1|Zc3hdc8	zinc finger CCCH type containing 8	protein-coding	0.110000	0.616915	
mm_84725.1	chr9	74528560	74528760	-	1	NA	NA	NA	-319777	NR_045284	100503019	Mm.482658	NR_045284	ENSMUSG00000066477	Gm16551	-	predicted gene 16551	ncRNA	0.015000	0.437811	
mm_52143.1	chr6	97977770	97977970	+	1	NA	NA	NA	-13913	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.452736	
mm_29544.1	chr3	116712550	116712750	-	1	NA	NA	NA	-370	NM_144902	229782	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	0.010000	0.502488	
mm_173134.1	chrX	19442125	19442325	-	1	NA	NA	NA	-295254	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.030000	0.452736	
mm_69617.1	chr7	137310904	137311104	-	1	NA	NA	NA	3441	NM_001113415	13593	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.030000	0.388060	50(TCTTTTAAAGTA,+,0.00)
mm_29518.1	chr3	116428636	116428836	-	1	NA	NA	NA	-4704	NM_001173553	229776	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.015000	0.388060	
mm_90304.1	chr10	126978620	126978820	+	1	NA	NA	NA	3	NM_001113470	52468	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0.115000	0.711443	
mm_113367.1	chr13	32996879	32997079	+	1	NA	NA	NA	-7562	NM_009256	20723	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0.005000	0.427861	
mm_7085.1	chr1	88554748	88554948	-	1	NA	NA	NA	3331	NR_037971	100503197	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.010000	0.522388	-35(TGCTATAAAAGG,-,0.00)
mm_120125.1	chr14	60087438	60087638	+	1	NA	NA	NA	-704	NM_015803	50769	Mm.319599	NM_015803	ENSMUSG00000021983	Atp8a2	AI415030|Atpc1b|agil|wl	ATPase, aminophospholipid transporter-like, class I, type 8A, member 2	protein-coding	0.020000	0.482587	
mm_135334.1	chr16	38828682	38828882	-	1	NA	NA	NA	-33	NM_029042	74663	Mm.50263	NM_029042	ENSMUSG00000022798	4930435E12Rik	TSCPA	RIKEN cDNA 4930435E12 gene	protein-coding	0.010000	0.532338	
mm_153493.1	chr19	41329903	41330103	-	1	NA	NA	NA	55067	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.020000	0.492537	
mm_120805.1	chr14	74922044	74922244	+	1	NA	NA	NA	25733	NM_001252132	380916	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.040000	0.587065	
mm_88883.1	chr10	81134380	81134580	+	1	NA	NA	NA	-1791	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.030000	0.592040	
mm_87202.1	chr10	39613045	39613245	+	1	NA	NA	NA	211	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.025000	0.512438	
mm_142549.1	chr17	46590398	46590598	-	1	NA	NA	NA	-34336	NM_020493	20807	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0.010000	0.517413	
mm_87953.1	chr10	63061494	63061694	+	1	NA	NA	NA	-23	NM_026701	68371	Mm.261389	NM_026701	ENSMUSG00000020072	Pbld1	0610038K03Rik|Mawbp|Pbld	phenazine biosynthesis-like protein domain containing 1	protein-coding	0.040000	0.522388	
mm_66660.1	chr7	45716933	45717133	-	1	NA	NA	NA	969	NM_203280	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.015000	0.462687	19(CCATTTAAAGTT,+,0.00)
mm_168325.1	chr11	116023317	116023517	-	1	NA	NA	NA	1087	NM_008211	15081	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0.025000	0.407960	20(GTTTTTATGGCA,+,0.00)
mm_160891.1	chr11	70606464	70606664	+	1	NA	NA	NA	-9330	NM_001145537	668433	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.030000	0.661692	
mm_160983.1	chr11	103339667	103339867	-	1	NA	NA	NA	4935	NM_133715	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.005000	0.517413	
mm_116715.1	chr13	51569082	51569282	-	1	NA	NA	NA	-2098	NM_009167	20418	Mm.131870	NM_009167	ENSMUSG00000021448	Shc3	N-Shc|Rai|ShcC	src homology 2 domain-containing transforming protein C3	protein-coding	0.085000	0.636816	
mm_49650.1	chr6	30806405	30806605	+	1	NA	NA	NA	65206	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.328358	
mm_46237.1	chr5	99218336	99218536	-	1	NA	NA	NA	34491	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.015000	0.432836	
mm_59974.1	chr7	30458187	30458387	+	1	NA	NA	NA	-772	NM_172898	243911	Mm.113908	NM_172898	ENSMUSG00000036915	Kirrel2	C330019F22Rik|NEPH3|NLG1	kin of IRRE like 2 (Drosophila)	protein-coding	0.010000	0.547264	
mm_108904.1	chr12	100203515	100203715	+	1	NA	NA	NA	3471	NM_001313934	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.030000	0.487562	
mm_69708.1	chr7	140102242	140102442	-	1	NA	NA	NA	99	NM_001286217	69064	Mm.41915	NM_026928	ENSMUSG00000025466	Fuom	Fucu|Le51	fucose mutarotase	protein-coding	0.080000	0.626866	
mm_64511.1	chr7	143628163	143628363	+	1	NA	NA	NA	-418	NM_175649	244237	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	0.020000	0.507463	
mm_87143.1	chr10	34483425	34483625	+	1	NA	NA	NA	125	NM_010237	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.020000	0.497512	-99(CCTTTTAGATCA,+,0.00)
mm_9845.1	chr1	184732013	184732213	-	1	NA	NA	NA	380	NM_008250	15284	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.070000	0.676617	
mm_69486.1	chr7	133917566	133917766	-	1	NA	NA	NA	-134881	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.015000	0.452736	
mm_48454.1	chr5	140760353	140760553	-	1	NA	NA	NA	36326	NM_173405	231842	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.045000	0.621891	
mm_71843.1	chr8	68904792	68904992	+	1	NA	NA	NA	24337	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.000000	0.338308	
mm_22554.1	chr3	9658256	9658456	+	1	NA	NA	NA	-48271	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.005000	0.487562	-35(GATCATAAAAGG,-,0.00)
mm_3117.1	chr1	134632031	134632231	+	1	NA	NA	NA	-14550	NM_009307	20980	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194	synaptotagmin II	protein-coding	0.025000	0.432836	
mm_153371.1	chr19	40299608	40299808	-	1	NA	NA	NA	-28092	NM_016861	54132	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	0.035000	0.432836	
mm_109921.1	chr12	8499909	8500109	-	1	NA	NA	NA	-24	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.080000	0.611940	-35(CTCTTTAAATAG,-,0.00),-33(CTTTAAATAGCG,+,0.00)
mm_64639.1	chr7	3993621	3993821	-	1	NA	NA	NA	69483	NM_001302677	52855	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.015000	0.353234	-7(TTTTTTAAAGGT,+,0.00)
mm_11134.1	chr2	28467975	28468175	+	1	NA	NA	NA	9	NM_001166031	118451	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	0.110000	0.716418	
mm_128135.1	chr15	31453529	31453729	-	1	NA	NA	NA	60	NM_145852	252967	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.110000	0.711443	
mm_7649.1	chr1	128319006	128319206	-	1	NA	NA	NA	9212	NM_001081078	226413	Mm.26930	NM_001081078	ENSMUSG00000026354	Lct	Gm100|LAC|LPH|Lphl	lactase	protein-coding	0.010000	0.517413	
mm_6849.1	chr1	84245146	84245346	-	1	NA	NA	NA	-26285	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.427861	-79(CTTTATATGCCC,+,0.00)
mm_100105.1	chr11	115766711	115766911	+	1	NA	NA	NA	1378	NM_028014	71947	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	0.025000	0.482587	
mm_162680.1	chr10	12869365	12869565	-	1	NA	NA	NA	-7730	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.125000	0.761194	
mm_65874.1	chr7	29518439	29518639	-	1	NA	NA	NA	-13079	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.120000	0.681592	
mm_78931.1	chr9	45102779	45102979	+	1	NA	NA	NA	-14997	NM_001014761	72821	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	0.005000	0.452736	
mm_166688.1	chr6	104493044	104493244	+	1	NA	NA	NA	100	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding	0.015000	0.507463	
mm_128730.1	chr15	64133156	64133356	-	1	NA	NA	NA	-72808	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.010000	0.432836	
mm_124554.1	chr14	122913049	122913249	-	1	NA	NA	NA	16	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.130000	0.756219	
mm_42367.1	chr5	114923140	114923340	+	1	NA	NA	NA	0	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.025000	0.587065	74(CGCCTTAAAAAA,-,0.00),76(CCTTAAAAAAGG,+,0.00)
mm_114711.1	chr13	83573490	83573690	+	1	NA	NA	NA	-17	NM_001347577	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.015000	0.462687	
mm_51532.1	chr6	83188897	83189097	+	1	NA	NA	NA	3051	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.025000	0.567164	-34(GCTTTTATATAC,+,0.00),-32(TTTTATATACCC,+,0.00)
mm_110451.1	chr12	51634821	51635021	-	1	NA	NA	NA	41580	NM_001198835	12810	Mm.21325	NM_007728	ENSMUSG00000020953	Coch	AW122937|Coch-5B2|D12H14S564E	cochlin	protein-coding	0.000000	0.343284	
mm_9767.1	chr1	180993930	180994130	-	1	NA	NA	NA	23539	NM_010145	13849	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.010000	0.467662	
mm_2158.1	chr1	88211871	88212071	+	1	NA	NA	NA	12	NM_201645	394436	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0.025000	0.502488	
mm_35519.1	chr4	41203488	41203688	-	1	NA	NA	NA	67567	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.020000	0.457711	
mm_120018.1	chr14	55757780	55757980	+	1	NA	NA	NA	544	NM_009894	12684	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	0.030000	0.532338	-39(CCTTATCTAGCA,+,0.00)
mm_82990.1	chr9	36533911	36534111	-	1	NA	NA	NA	7952	NM_001033783	434396	Mm.118836	NM_001033783	ENSMUSG00000074448	Gm5615	EG434396|Pate-H|Pate9	predicted gene 5615	protein-coding	0.005000	0.427861	
mm_8472.1	chr1	153406432	153406632	-	1	NA	NA	NA	7701	NR_033736	626058	Mm.31556	NM_001177359		E330020D12Rik	EG626058|F430003O07Rik|Gm6648	Riken cDNA E330020D12 gene	ncRNA	0.030000	0.507463	
mm_124432.1	chr14	118236943	118237143	-	1	NA	NA	NA	-13	NM_177753	223227	Mm.70950	NM_177753	ENSMUSG00000061517	Sox21	Sox25	SRY (sex determining region Y)-box 21	protein-coding	0.065000	0.651741	
mm_65487.1	chr7	25678985	25679185	-	1	NA	NA	NA	-2073	NM_172148	232987	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0.005000	0.447761	
mm_51681.1	chr6	86472688	86472888	+	1	NA	NA	NA	8042	NR_131125	320486	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	0.020000	0.572139	
mm_132735.1	chr16	43889716	43889916	+	1	NA	NA	NA	-86	NM_027801	212153	Mm.209835	NM_027801	ENSMUSG00000022701	Ccdc191	2610015P09Rik|8430422M09Rik|AU040712	coiled-coil domain containing 191	protein-coding	0.045000	0.552239	
mm_148714.1	chr19	5808479	5808679	+	1	NA	NA	NA	-5907	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.035000	0.497512	
mm_42892.1	chr5	122396650	122396850	+	1	NA	NA	NA	4872	NM_019824	56378	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.040000	0.577114	
mm_137750.1	chr17	29395621	29395821	+	1	NA	NA	NA	34807	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.030000	0.577114	
mm_47116.1	chr5	119628631	119628831	-	1	NA	NA	NA	2789	NR_046178	330183	Mm.413133	NR_046178	ENSMUSG00000085708	Gm16063	G630008E18|OTTMUSG00000029664	predicted gene 16063	ncRNA	0.020000	0.537313	
mm_128818.1	chr15	67115085	67115285	-	1	NA	NA	NA	61697	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.025000	0.557214	-32(GTTTATAAAGAG,+,0.00)
mm_88229.1	chr10	70599725	70599925	+	1	NA	NA	NA	-534	NM_178621	70911	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding	0.180000	0.766169	
mm_77099.1	chr8	111027596	111027796	-	1	NA	NA	NA	74	NM_172284	234733	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	0.095000	0.656716	
mm_133254.1	chr16	77329200	77329400	+	1	NA	NA	NA	-28	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.030000	0.522388	
mm_115230.1	chr13	109902762	109902962	+	1	NA	NA	NA	-947	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.095000	0.636816	
mm_23576.1	chr3	63345117	63345317	+	1	NA	NA	NA	49122	NM_001289463	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.020000	0.462687	-93(GGCCCTTTATGG,-,0.00),-91(CCCTTTATGGGA,+,0.00)
mm_1065.1	chr1	59150797	59150997	+	1	NA	NA	NA	10739	NM_145143	227157	Mm.474049	NM_145143	ENSMUSG00000079550	Mpp4	Dlg6	membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)	protein-coding	0.010000	0.502488	
mm_120122.1	chr14	59625473	59625673	+	1	NA	NA	NA	292	NM_145463	219134	Mm.275409	NM_145463	ENSMUSG00000044461	Shisa2	9430059P22Rik|MAd2|Tmem46|mShisa|shisa	shisa family member 2	protein-coding	0.125000	0.781095	
mm_166174.1	chr5	30155021	30155221	-	1	NA	NA	NA	-132	NM_145558	231086	Mm.291463	NM_145558	ENSMUSG00000059447	Hadhb	4930479F15Rik|Mtpb|TP-beta	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit	protein-coding	0.070000	0.577114	
mm_59748.1	chr7	28820538	28820738	+	1	NA	NA	NA	-4700	NM_016772	51798	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.025000	0.517413	
mm_109021.1	chr12	103550261	103550461	+	1	NA	NA	NA	17796	NM_028980	74521	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	0.010000	0.363184	
mm_148510.1	chr19	4215740	4215940	+	1	NA	NA	NA	1451	NM_001310039	56708	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	0.010000	0.442786	
mm_120893.1	chr14	75845183	75845383	+	1	NA	NA	NA	27	NM_009429	22070	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	0.155000	0.761194	15(CTCTATATGAGG,-,0.00)
mm_122090.1	chr14	30625229	30625429	-	1	NA	NA	NA	879	NM_011103	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.045000	0.621891	
mm_118488.1	chr14	12284119	12284319	+	1	NA	NA	NA	16	NM_001284386	218734	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	0.070000	0.636816	
mm_15027.1	chr2	152687070	152687270	+	1	NA	NA	NA	22	NM_025543	66405	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	0.105000	0.601990	
mm_121791.1	chr14	20082589	20082789	-	1	NA	NA	NA	483	NM_026209	67509	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0.045000	0.507463	
mm_25107.1	chr3	101376907	101377107	+	1	NA	NA	NA	-118	NM_207205	78908	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	0.115000	0.781095	
mm_97276.1	chr11	75999887	76000087	+	1	NA	NA	NA	75	NM_198637	74230	Mm.271247	NM_198637	ENSMUSG00000053783	1700016K19Rik	Liat1	RIKEN cDNA 1700016K19 gene	protein-coding	0.105000	0.686567	
mm_138210.1	chr17	34305799	34305999	+	1	NA	NA	NA	32	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.000000	0.507463	
mm_71047.1	chr8	33680690	33680890	+	1	NA	NA	NA	27552	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.035000	0.487562	
mm_63491.1	chr7	127769732	127769932	+	1	NA	NA	NA	17	NM_198424	269999	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0.065000	0.656716	
mm_22319.1	chr2	180541321	180541521	-	1	NA	NA	NA	-39883	NM_028479	73247	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	0.030000	0.547264	
mm_129992.1	chr15	86168157	86168357	-	1	NA	NA	NA	17884	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.005000	0.502488	
mm_71312.1	chr8	43180438	43180638	+	1	NA	NA	NA	-2584	NM_001160412	622117	Mm.390031	NM_001160412	ENSMUSG00000091490	Triml2	EG622117|Tu4	tripartite motif family-like 2	protein-coding	0.045000	0.497512	
mm_62678.1	chr7	109610183	109610383	+	1	NA	NA	NA	6285	NR_037617	76954	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.005000	0.477612	-16(GCTTTAAGACAG,+,0.00),56(GCTTTTAAAATG,+,0.00)
mm_146695.1	chr18	12941571	12941771	-	1	NA	NA	NA	170	NM_207530	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.105000	0.736318	
mm_61264.1	chr7	66109362	66109562	+	1	NA	NA	NA	-53	NM_001081163	269941	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.125000	0.671642	
mm_141400.1	chr17	29263855	29264055	-	1	NA	NA	NA	16	NM_026845	68816	Mm.328928	NM_026845	ENSMUSG00000024007	Ppil1	1110060O10Rik|AI327391|Cypl1	peptidylprolyl isomerase (cyclophilin)-like 1	protein-coding	0.080000	0.641791	
mm_88564.1	chr10	79664495	79664695	+	1	NA	NA	NA	21	NM_013591	17123	Mm.391556	NM_013591	ENSMUSG00000020310	Madcam1	AV211525	mucosal vascular addressin cell adhesion molecule 1	protein-coding	0.020000	0.621891	
mm_72676.1	chr8	84913237	84913437	+	1	NA	NA	NA	2	NR_103491	100503676	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	0.080000	0.616915	
mm_118761.1	chr14	22428651	22428851	+	1	NA	NA	NA	114047	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.005000	0.532338	
mm_125226.1	chr15	34131070	34131270	+	1	NA	NA	NA	48451	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.000000	0.393035	-87(TTCCATATAAAG,-,0.00),-85(CCATATAAAGAA,+,0.00)
mm_83750.1	chr9	51165559	51165759	-	1	NA	NA	NA	-48031	NM_011136	18985	Mm.897	NM_011136	ENSMUSG00000032053	Pou2af1	BOB.1|Bob-1|Bob1|OBF-1|OBF.1|OCA-B|OCAB	POU domain, class 2, associating factor 1	protein-coding	0.010000	0.542289	-33(GGCTTTTTAAAG,-,0.00),-31(CTTTTTAAAGAC,+,0.00)
mm_83049.1	chr9	37544892	37545092	-	1	NA	NA	NA	5737	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.060000	0.507463	
mm_52765.1	chr6	120932760	120932960	+	1	NA	NA	NA	-16040	NM_007544	12122	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	0.030000	0.492537	
mm_149392.1	chr19	11386771	11386971	+	1	NA	NA	NA	11383	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.000000	0.313433	
mm_39701.1	chr5	27261892	27262092	+	1	NA	NA	NA	57	NM_001136060	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.060000	0.631841	
mm_155528.1	chrX	74282646	74282846	+	1	NA	NA	NA	28	NM_001242615	66826	Mm.268483	NM_181516	ENSMUSG00000009995	Taz	5031411C02Rik|9130012G04Rik|AW107266|AW552613|G4.5	tafazzin	protein-coding	0.085000	0.597015	
mm_90091.1	chr10	116950489	116950689	+	1	NA	NA	NA	27	NR_038026	71086	Mm.214134	NR_038025		4933412E12Rik	-	RIKEN cDNA 4933412E12 gene	ncRNA	0.075000	0.681592	
mm_44745.1	chr5	31202180	31202380	-	1	NA	NA	NA	23	NM_175311	101023	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	0.095000	0.661692	
mm_81281.1	chr9	108296806	108297006	+	1	NA	NA	NA	-16	NM_001013814	434437	Mm.390225	NM_001013814	ENSMUSG00000032607	Amt	EG434437	aminomethyltransferase	protein-coding	0.040000	0.601990	
mm_9605.1	chr1	175625523	175625723	-	1	NA	NA	NA	12	NM_010209	14194	Mm.41502	NM_010209	ENSMUSG00000026526	Fh1	Fh|Fh-1	fumarate hydratase 1	protein-coding	0.095000	0.601990	
mm_127632.1	chr15	102470608	102470808	+	1	NA	NA	NA	76	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.105000	0.771144	
mm_11373.1	chr2	31081623	31081823	+	1	NA	NA	NA	14777	NM_001177650	14269	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.015000	0.562189	
mm_169261.1	chr13	82694601	82694801	-	1	NA	NA	NA	3632	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0.030000	0.537313	
mm_55233.1	chr6	52240748	52240948	-	1	NA	NA	NA	6	NM_001122950	15395	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0.050000	0.547264	49(CCCTATAAAAGC,+,0.00),49(CCCTATAAAAGC,-,0.00)
mm_157977.1	chrX	93922910	93923110	-	1	NA	NA	NA	-45646	NR_028320	385493	Mm.328014	NM_001033480	ENSMUSG00000081044	AU015836	-	expressed sequence AU015836	ncRNA	0.095000	0.661692	
mm_100899.1	chr11	6066304	6066504	-	1	NA	NA	NA	-656	NM_007595	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	0.015000	0.547264	
mm_35985.1	chr4	55475290	55475490	-	1	NA	NA	NA	-56548	NR_040674	100415914	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	OTTMUSG00000007226	predicted gene 12505	ncRNA	0.005000	0.427861	71(TGCTTTTAAAAC,-,0.00),72(GCTTTTAAAACT,+,0.00)
mm_103589.1	chr11	78233490	78233690	-	1	NA	NA	NA	12113	NM_009297	20926	Mm.20755	NM_009297	ENSMUSG00000002052	Supt6	5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162	suppressor of Ty 6	protein-coding	0.010000	0.477612	
mm_107645.1	chr12	52504166	52504366	+	1	NA	NA	NA	-11811	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0.185000	0.805970	
mm_160916.1	chr11	83409859	83410059	+	1	NA	NA	NA	-113	NM_001013386	276952	Mm.66275	NM_001013386	ENSMUSG00000020684	Rasl10b	B230331P10Rik|Gm729|VTS58635	RAS-like, family 10, member B	protein-coding	0.095000	0.786070	
mm_134116.1	chr16	10294357	10294557	-	1	NA	NA	NA	19511	NM_007929	13731	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	0.000000	0.427861	
mm_23865.1	chr3	83014043	83014243	+	1	NA	NA	NA	6419	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.040000	0.437811	
mm_154448.1	chrM	1812	2012	-	1	NA	NA	NA	NA	NA									0.030000	0.422886	
mm_76107.1	chr8	80395103	80395303	-	1	NA	NA	NA	-98842	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.015000	0.402985	
mm_163321.1	chr12	7977680	7977880	+	1	NA	NA	NA	103	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.050000	0.646766	
mm_61826.1	chr7	87861628	87861828	+	1	NA	NA	NA	277560	NM_001143834	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0.000000	0.368159	1(TTTTTTATACTC,+,0.00)
mm_61151.1	chr7	58458434	58458634	+	1	NA	NA	NA	-199668	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.020000	0.477612	-33(GGTTATATAAGG,-,0.00)
mm_56020.1	chr6	86569330	86569530	-	1	NA	NA	NA	42029	NR_037961	72012	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.010000	0.522388	
mm_144789.1	chr18	35889586	35889786	+	1	NA	NA	NA	59868	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.085000	0.691542	
mm_54301.1	chr6	29507860	29508060	-	1	NA	NA	NA	-8	NM_001029985	333088	Mm.332961	NM_001029985	ENSMUSG00000059022	Kcp	AW060220|CRIM-2|Crim2|Gm793|KCP-1	kielin/chordin-like protein	protein-coding	0.115000	0.731343	
mm_84941.1	chr9	82975288	82975488	-	1	NA	NA	NA	101	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.120000	0.716418	
mm_80293.1	chr9	73094749	73094949	+	1	NA	NA	NA	-7549	NM_025890	66991	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	0.050000	0.557214	
mm_61012.1	chr7	49364862	49365062	+	1	NA	NA	NA	118773	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.030000	0.527363	
mm_60671.1	chr7	45017916	45018116	+	1	NA	NA	NA	9	NM_009101	20130	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.085000	0.696517	
mm_132370.1	chr16	34807233	34807433	+	1	NA	NA	NA	22383	NM_139300	107589	Mm.33360	NM_139300	ENSMUSG00000022836	Mylk	9530072E15Rik|A930019C19Rik|AW489456|KRP|MLCK108|MLCK210|Mlck|nmMlck|smMLCK	myosin, light polypeptide kinase	protein-coding	0.030000	0.597015	
mm_85374.1	chr9	103222958	103223158	-	1	NA	NA	NA	7228	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.020000	0.522388	
mm_51760.1	chr6	87838996	87839196	+	1	NA	NA	NA	-337	NM_133934	57905	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	0.025000	0.562189	
mm_157428.1	chrX	38564908	38565108	-	1	NA	NA	NA	11188	NM_028288	72584	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	0.070000	0.631841	
mm_170248.1	chr1	79381067	79381267	+	1	NA	NA	NA	58923	NM_009129	20254	Mm.5038	NM_009129	ENSMUSG00000050711	Scg2	Chgc|SgII	secretogranin II	protein-coding	0.060000	0.646766	
mm_118742.1	chr14	22318577	22318777	+	1	NA	NA	NA	224121	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.015000	0.417910	
mm_14323.1	chr2	129365880	129366080	+	1	NA	NA	NA	-3922	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.015000	0.517413	
mm_69590.1	chr7	135705672	135705872	-	1	NA	NA	NA	10607	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.378109	
mm_96254.1	chr11	62602777	62602977	+	1	NA	NA	NA	0	NR_030738	69221	Mm.270874	NR_030738	ENSMUSG00000086841	2410006H16Rik	-	RIKEN cDNA 2410006H16 gene	ncRNA	0.080000	0.646766	-34(GCCCTTAAGAGG,-,0.00),-33(CCCTTAAGAGGA,+,0.00)
mm_60956.1	chr7	47053878	47054078	+	1	NA	NA	NA	3338	NM_026436	67893	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.010000	0.601990	
mm_56569.1	chr6	102564303	102564503	-	1	NA	NA	NA	-99736	NM_008779	18488	Mm.435479	NM_008779	ENSMUSG00000030075	Cntn3	Pang	contactin 3	protein-coding	0.130000	0.781095	
mm_102691.1	chr11	65727922	65728122	-	1	NA	NA	NA	6810	NR_030417	791070		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	0.000000	0.378109	
mm_91694.1	chr10	43997335	43997535	-	1	NA	NA	NA	7411	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.015000	0.507463	
mm_48105.1	chr5	137071141	137071341	-	1	NA	NA	NA	1031	NM_008871	18787	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.020000	0.527363	
mm_70420.1	chr8	11463876	11464076	+	1	NA	NA	NA	-13953	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.010000	0.552239	
mm_112935.1	chr13	20985041	20985241	+	1	NA	NA	NA	88158	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.000000	0.437811	
mm_166081.1	chr4	137681630	137681830	+	1	NA	NA	NA	103	NM_001256218	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.120000	0.726368	
mm_52463.1	chr6	113697230	113697430	+	1	NA	NA	NA	280	NM_001033463	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.180000	0.835821	
mm_142696.1	chr17	47834398	47834598	-	1	NA	NA	NA	193	NM_001109973	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.090000	0.686567	
mm_62192.1	chr7	97637590	97637790	+	1	NA	NA	NA	7422	NR_126461	75448	Mm.439818	NR_126461	ENSMUSG00000086433	Rsf1os1	1700006D18Rik	remodeling and spacing factor 1, opposite strand 1	ncRNA	0.005000	0.348259	
mm_31320.1	chr4	46165959	46166159	+	1	NA	NA	NA	27548	NM_001033201	433702	Mm.389536	NM_001033201	ENSMUSG00000028330	Ncbp1	AU014645|AW538051|CBP80	nuclear cap binding protein subunit 1	protein-coding	0.005000	0.417910	
mm_120094.1	chr14	57999222	57999422	+	1	NA	NA	NA	-60	NM_028643	68514	Mm.26834	NM_028643	ENSMUSG00000021973	Micu2	1110008L20Rik|4833427E09Rik|AU041871|Efha1|Smhs2	mitochondrial calcium uptake 2	protein-coding	0.110000	0.646766	
mm_120129.1	chr14	60197162	60197362	+	1	NA	NA	NA	31653	NR_030458	751526		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA	0.030000	0.517413	
mm_136867.1	chr17	12909888	12910088	+	1	NA	NA	NA	12	NM_001034866	240023	Mm.242315	NM_001034866	ENSMUSG00000073460	Pnldc1	Gm313	poly(A)-specific ribonuclease (PARN)-like domain containing 1	protein-coding	0.085000	0.621891	-14(GGGCCTTAAAGC,-,0.00)
mm_139655.1	chr17	57402490	57402690	+	1	NA	NA	NA	43904	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.010000	0.472637	
mm_38329.1	chr4	137388301	137388501	-	1	NA	NA	NA	21390	NM_001126318	242711	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011|OTTMUSG00000009877	chymotrypsin-like elastase family, member 3A	protein-coding	0.105000	0.587065	
mm_157181.1	chrX	9662860	9663060	-	1	NA	NA	NA	23	NM_025975	67117	Mm.29150	NM_025975	ENSMUSG00000031176	Dynlt3	2310075M16Rik|AU042796|Tcte1l	dynein light chain Tctex-type 3	protein-coding	0.050000	0.651741	
mm_153436.1	chr19	40959656	40959856	-	1	NA	NA	NA	34779	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.020000	0.597015	
mm_126901.1	chr15	89548386	89548586	+	1	NA	NA	NA	-19840	NM_013455	11434	Mm.57	NM_013455	ENSMUSG00000022622	Acr	-	acrosin prepropeptide	protein-coding	0.045000	0.646766	
mm_149561.1	chr19	12794881	12795081	+	1	NA	NA	NA	1142	NR_024093	664779	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0.075000	0.666667	
mm_5400.1	chr1	33719988	33720188	-	1	NA	NA	NA	192	NM_008999	19335	Mm.86744	NM_008999	ENSMUSG00000004768	Rab23	AW545388|opb|opb2	RAB23, member RAS oncogene family	protein-coding	0.130000	0.706468	
mm_135249.1	chr16	37539666	37539866	-	1	NA	NA	NA	3	NM_028812	74197	Mm.287795	NM_028812	ENSMUSG00000022828	Gtf2e1	2610024P03Rik|56kDa|AI303800|FE|TFIIE-A	general transcription factor II E, polypeptide 1 (alpha subunit)	protein-coding	0.085000	0.597015	
mm_55884.1	chr6	83527376	83527576	-	1	NA	NA	NA	8775	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.015000	0.517413	
mm_39098.1	chr4	154918981	154919181	-	1	NA	NA	NA	8996	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.000000	0.398010	
mm_79077.1	chr9	46242092	46242292	+	1	NA	NA	NA	1348	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.010000	0.492537	
mm_92343.1	chr10	75837223	75837423	-	1	NA	NA	NA	-2442	NM_010361	14872	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.065000	0.587065	
mm_60809.1	chr7	45641663	45641863	+	1	NA	NA	NA	1786	NM_172418	74490	Mm.107442	NM_172418	ENSMUSG00000042918	Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding	0.025000	0.616915	
mm_2189.1	chr1	89070314	89070514	+	1	NA	NA	NA	-48	NM_133816	98402	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.135000	0.781095	
mm_109242.1	chr12	109452667	109452867	+	1	NA	NA	NA	-56	NR_033813	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.035000	0.611940	
mm_40275.1	chr5	41341997	41342197	+	1	NA	NA	NA	365594	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.010000	0.437811	
mm_50258.1	chr6	43067201	43067401	+	1	NA	NA	NA	-48443	NM_146655	258649	Mm.271494	NM_146655	ENSMUSG00000094669	Olfr441	MOR261-3	olfactory receptor 441	protein-coding	0.005000	0.442786	
mm_133920.1	chr16	97715084	97715284	+	1	NA	NA	NA	48571	NM_023663	72388	Mm.35290	NM_023663	ENSMUSG00000005251	Ripk4	2310069J12Rik|AI552420|ANKK2|Ankrd3|DIk|PKK|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding	0.005000	0.527363	
mm_12274.1	chr2	68999780	68999980	+	1	NA	NA	NA	-135920	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.015000	0.338308	
mm_33004.1	chr4	120588634	120588834	+	1	NA	NA	NA	-11	NM_001101603	667063	Mm.90231	NM_001101603	ENSMUSG00000091297	Gm8439	EG667063|Gm1664	predicted gene 8439	protein-coding	0.015000	0.502488	
mm_83958.1	chr9	57071756	57071956	-	1	NA	NA	NA	110	NR_045886	100038566	Mm.361900	NR_045886		Gm10658	ENSMUSG00000074284	predicted gene 10658	ncRNA	0.040000	0.482587	
mm_2785.1	chr1	130846285	130846485	+	1	NA	NA	NA	-19392	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.035000	0.562189	
mm_104313.1	chr11	93885590	93885790	-	1	NA	NA	NA	76	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.140000	0.711443	
mm_1112.1	chr1	59867268	59867468	+	1	NA	NA	NA	-45638	NM_001037725	72750	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0.020000	0.402985	
mm_52775.1	chr6	121210702	121210902	+	1	NA	NA	NA	68	NM_017379	53857	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0.090000	0.721393	
mm_130621.1	chr15	100403239	100403439	-	1	NA	NA	NA	19716	NM_001146161	18174	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0.040000	0.487562	
mm_53067.1	chr6	124914315	124914515	+	1	NA	NA	NA	-2710	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.010000	0.567164	
mm_23288.1	chr3	52047267	52047467	+	1	NA	NA	NA	57639	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.005000	0.502488	
mm_101514.1	chr11	32349311	32349511	-	1	NA	NA	NA	1600	NM_177364	268396	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.020000	0.562189	
mm_110305.1	chr12	32953709	32953909	-	1	NA	NA	NA	-20	NR_044986	74076	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0.075000	0.641791	
mm_126137.1	chr15	78345386	78345586	+	1	NA	NA	NA	-3113	NR_106137	102465776		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0.025000	0.567164	
mm_17666.1	chr2	32084591	32084791	-	1	NA	NA	NA	-986	NM_175511	241303	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.115000	0.736318	
mm_79736.1	chr9	62344792	62344992	+	1	NA	NA	NA	3549	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.065000	0.626866	
mm_33410.1	chr4	129849077	129849277	+	1	NA	NA	NA	28469	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.005000	0.497512	
mm_120609.1	chr14	70203301	70203501	+	1	NA	NA	NA	1222	NM_001271408	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.020000	0.601990	
mm_155166.1	chrX	53016281	53016481	+	1	NA	NA	NA	28303	NM_013556	15452	Mm.299381	NM_013556	ENSMUSG00000025630	Hprt	C81579|HPGRT|Hprt1	hypoxanthine guanine phosphoribosyl transferase	protein-coding	0.000000	0.313433	-45(CTTTTTAAAAGG,+,0.00),-45(CTTTTTAAAAGG,-,0.00)
mm_108334.1	chr12	80115055	80115255	+	1	NA	NA	NA	-2142	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.060000	0.547264	
mm_108447.1	chr12	82451096	82451296	+	1	NA	NA	NA	139847	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.005000	0.512438	
mm_25106.1	chr3	101310359	101310559	+	1	NA	NA	NA	-22520	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.000000	0.452736	-86(GTTTTTATGGAG,+,0.00)
mm_6452.1	chr1	74016473	74016673	-	1	NA	NA	NA	107874	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.025000	0.537313	
mm_159115.1	chr2	58566709	58566909	-	1	NA	NA	NA	19	NM_001110205	11477	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0.130000	0.776119	
mm_132495.1	chr16	36941325	36941525	+	1	NA	NA	NA	6442	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.020000	0.452736	
mm_33620.1	chr4	132690560	132690760	+	1	NA	NA	NA	41886	NM_201368	381560	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	0.010000	0.477612	
mm_158966.1	chr1	93082294	93082494	-	1	NA	NA	NA	86	NM_001294150	16560	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.030000	0.562189	
mm_41144.1	chr5	87925508	87925708	+	1	NA	NA	NA	-25	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.015000	0.447761	
mm_172603.1	chr8	15519867	15520067	+	1	NA	NA	NA	462314	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.080000	0.522388	46(AACTTTAAATGG,-,0.00)
mm_51059.1	chr6	65671663	65671863	+	1	NA	NA	NA	152	NM_172399	68169	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding	0.125000	0.726368	
mm_153671.1	chr19	44396025	44396225	-	1	NA	NA	NA	11584	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.020000	0.487562	
mm_34072.1	chr4	138457274	138457474	+	1	NA	NA	NA	2226	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.005000	0.398010	
mm_135797.1	chr16	57198992	57199192	-	1	NA	NA	NA	-31760	NM_023175	52633	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.020000	0.457711	
mm_68982.1	chr7	126589312	126589512	-	1	NA	NA	NA	-3595	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.015000	0.606965	
mm_24421.1	chr3	90527059	90527259	+	1	NA	NA	NA	310	NM_001163526	66166	Mm.24006	NM_025393	ENSMUSG00000042306	S100a14	1110013O05Rik|S100a15|S114	S100 calcium binding protein A14	protein-coding	0.015000	0.502488	
mm_5670.1	chr1	42711241	42711441	-	1	NA	NA	NA	2113	NR_110495	66620	Mm.383631	NR_110495	ENSMUSG00000097063	Pantr2	2610207O16Rik|Pou3f3os2|linc-Brn1b	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2	ncRNA	0.005000	0.393035	
mm_76285.1	chr8	84198258	84198458	-	1	NA	NA	NA	-10160	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.030000	0.611940	
mm_148040.1	chr18	70244591	70244791	-	1	NA	NA	NA	-107	NM_029346	75577	Mm.58214	NM_029346	ENSMUSG00000024512	Dynap	2310002L13Rik	dynactin associated protein	protein-coding	0.015000	0.407960	
mm_96052.1	chr11	59565881	59566081	+	1	NA	NA	NA	5757	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.025000	0.577114	
mm_170097.1	chr17	39843034	39843234	+	1	NA	NA	NA	137	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.100000	0.676617	
mm_66145.1	chr7	31126918	31127118	-	1	NA	NA	NA	5	NM_011322	20266	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	0.125000	0.776119	
mm_38560.1	chr4	141652367	141652567	-	1	NA	NA	NA	11648	NM_001347237	69582	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	0.030000	0.552239	
mm_74130.1	chr8	123193906	123194106	+	1	NA	NA	NA	7771	NM_007876	13479	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	0.020000	0.512438	
mm_154986.1	chrX	38189703	38189903	+	1	NA	NA	NA	10	NM_001079513	56805	Mm.391248	NM_020256	ENSMUSG00000048047	Zbtb33	AW260253|E130014G12Rik|Kaiso|Znf-kaiso	zinc finger and BTB domain containing 33	protein-coding	0.140000	0.716418	3(ACATTTAAAGCG,+,0.00)
mm_103117.1	chr11	70015291	70015491	-	1	NA	NA	NA	37	NM_017366	11370	Mm.18630	NM_017366	ENSMUSG00000018574	Acadvl	vlcad	acyl-Coenzyme A dehydrogenase, very long chain	protein-coding	0.070000	0.626866	
mm_65375.1	chr7	25076797	25076997	-	1	NA	NA	NA	-308	NM_001168506	232976	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	0.090000	0.641791	
mm_32517.1	chr4	108633026	108633226	+	1	NA	NA	NA	13170	NM_177045	319965	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	0.020000	0.557214	
mm_166554.1	chr6	41547421	41547621	+	1	NA	NA	NA	25745	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.437811	-54(GACTATAAGAGG,-,0.00)
mm_15185.1	chr2	154200229	154200429	+	1	NA	NA	NA	-51	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.005000	0.552239	
mm_7043.1	chr1	87102144	87102344	-	1	NA	NA	NA	-638	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.010000	0.532338	
mm_94906.1	chr11	29373571	29373771	+	1	NA	NA	NA	-501	NM_176841	108686	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0.140000	0.761194	
mm_12678.1	chr2	75832161	75832361	+	1	NA	NA	NA	84	NM_172666	228061	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.185000	0.796020	
mm_170350.1	chr1	85109364	85109564	-	1	NA	NA	NA	389	NM_213615	381287	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.010000	0.542289	
mm_172284.1	chr6	93376044	93376244	+	1	NA	NA	NA	435562	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.005000	0.447761	-39(CTTTTAATAGCA,+,0.00)
mm_23058.1	chr3	35782941	35783141	+	1	NA	NA	NA	28903	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.005000	0.368159	62(TTTTTTAAACAC,+,0.00)
mm_166708.1	chr6	116459308	116459508	+	1	NA	NA	NA	1770	NM_009662	11689	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0.005000	0.497512	-34(CCATTTATAAAG,+,0.00)
mm_157369.1	chrX	37218175	37218375	-	1	NA	NA	NA	3983	NM_001025084	385343	Mm.379566	NM_001025084	ENSMUSG00000071773	Rhox1	-	reproductive homeobox 1	protein-coding	0.040000	0.542289	
mm_101364.1	chr11	23745486	23745686	-	1	NA	NA	NA	25384	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.025000	0.432836	
mm_154160.1	chr19	58455809	58456009	-	1	NA	NA	NA	-511	NM_010279	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.055000	0.597015	
mm_53991.1	chr6	6877854	6878054	-	1	NA	NA	NA	4114	NM_198854	13395	Mm.4873	NM_010056	ENSMUSG00000029755	Dlx5	AI385752	distal-less homeobox 5	protein-coding	0.020000	0.328358	
mm_12738.1	chr2	78918309	78918509	+	1	NA	NA	NA	49362	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.000000	0.283582	
mm_113173.1	chr13	24813590	24813790	+	1	NA	NA	NA	12033	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.005000	0.323383	
mm_168098.1	chr10	128909838	128910038	+	1	NA	NA	NA	72	NM_007653	12512	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.140000	0.791045	
mm_38772.1	chr4	147936623	147936823	-	1	NA	NA	NA	53	NM_011122	18822	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	0.115000	0.711443	
mm_46154.1	chr5	96092991	96093191	-	1	NA	NA	NA	68456	NM_001285511	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.000000	0.333333	
mm_67015.1	chr7	65527686	65527886	-	1	NA	NA	NA	-54245	NR_131060	407810	Mm.249337	NR_131060	ENSMUSG00000086662	BC046251	-	cDNA sequence BC046251	ncRNA	0.200000	0.830846	
mm_149356.1	chr19	10945165	10945365	+	1	NA	NA	NA	4001	NM_023731	108673	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0.030000	0.552239	
mm_167080.1	chr7	101012048	101012248	+	1	NA	NA	NA	-95	NM_001302346	18442	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0.095000	0.696517	
mm_85166.1	chr9	96394847	96395047	-	1	NA	NA	NA	-30648	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.015000	0.532338	
mm_104271.1	chr11	89077599	89077799	-	1	NA	NA	NA	3858	NM_001033266	217071	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	0.025000	0.537313	
mm_84137.1	chr9	59284058	59284258	-	1	NA	NA	NA	-7414	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.020000	0.497512	
mm_69421.1	chr7	132748659	132748859	-	1	NA	NA	NA	28157	NM_001347630	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.000000	0.368159	
mm_933.1	chr1	55450244	55450444	+	1	NA	NA	NA	44398	NM_001114663	227120	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.000000	0.432836	
mm_148720.1	chr19	5845221	5845421	+	1	NA	NA	NA	157	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.020000	0.527363	
mm_2402.1	chr1	93754840	93755040	+	1	NA	NA	NA	-93	NM_174874	66615	Mm.29087	NM_174874	ENSMUSG00000026280	Atg4b	2510009N07Rik|AW048066|Apg4b|Atg4bl|Autl1	autophagy related 4B, cysteine peptidase	protein-coding	0.195000	0.786070	
mm_142436.1	chr17	45570951	45571151	-	1	NA	NA	NA	2210	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.040000	0.502488	77(TTCTATAAAAGT,-,0.00)
mm_112820.1	chr13	20799951	20800151	+	1	NA	NA	NA	5938	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.522388	-99(TTCTCTAAAAAG,-,0.00)
mm_113776.1	chr13	44961449	44961649	+	1	NA	NA	NA	40547	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.010000	0.383085	
mm_38400.1	chr4	138938523	138938723	-	1	NA	NA	NA	-24676	NM_028453	73162	Mm.238081	NM_028453	ENSMUSG00000041161	Otud3	3110030K17Rik	OTU domain containing 3	protein-coding	0.020000	0.567164	
mm_24802.1	chr3	95554377	95554577	+	1	NA	NA	NA	-5200	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.005000	0.442786	
mm_33519.1	chr4	130929406	130929606	+	1	NA	NA	NA	-14879	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.000000	0.557214	
mm_135680.1	chr16	52420030	52420230	-	1	NA	NA	NA	32951	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.368159	
mm_161645.1	chr17	3178302	3178502	+	1	NA	NA	NA	63430	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.010000	0.482587	
mm_7332.1	chr1	105356398	105356598	-	1	NA	NA	NA	212	NM_178779	320311	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	0.105000	0.746269	
mm_99975.1	chr11	114091309	114091509	+	1	NA	NA	NA	-25458	NM_172800	237979	Mm.130504	NM_172800	ENSMUSG00000041592	Sdk2	4632412F08Rik|5330435L01Rik|Sdk-2|mKIAA1514	sidekick cell adhesion molecule 2	protein-coding	0.010000	0.447761	
mm_63096.1	chr7	122377224	122377424	+	1	NA	NA	NA	88199	NM_008855	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.015000	0.517413	
mm_33145.1	chr4	125146131	125146331	+	1	NA	NA	NA	-18350	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.020000	0.606965	
mm_126543.1	chr15	82027965	82028165	+	1	NA	NA	NA	11696	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.015000	0.422886	
mm_44075.1	chr5	148959701	148959901	+	1	NA	NA	NA	9551	NR_040686	71473	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	0.040000	0.562189	
mm_138132.1	chr17	34187709	34187909	+	1	NA	NA	NA	253	NM_013683	21354	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.100000	0.656716	
mm_170106.1	chr17	39844642	39844842	+	1	NA	NA	NA	1745	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.115000	0.716418	
mm_125562.1	chr15	58899475	58899675	+	1	NA	NA	NA	10346	NM_175226	75841	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0.025000	0.383085	
mm_26762.1	chr3	8667187	8667387	-	1	NA	NA	NA	-249	NM_010423	15213	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.145000	0.830846	
mm_120064.1	chr14	56908452	56908652	+	1	NA	NA	NA	20757	NM_029498	76007	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.000000	0.293532	
mm_5151.1	chr1	9942061	9942261	-	1	NA	NA	NA	382	NR_004410	266793		NR_004410	ENSMUSG00000093178	Snord87	MBII-276|Rnu87|U87	small nucleolar RNA, C/D box 87	snoRNA	0.005000	0.373134	
mm_135978.1	chr16	75047731	75047931	-	1	NA	NA	NA	538230	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.005000	0.402985	
mm_148352.1	chr18	84681951	84682151	-	1	NA	NA	NA	8	NM_001289531	66054	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.010000	0.557214	
mm_70347.1	chr8	4678568	4678768	+	1	NA	NA	NA	65498	NM_145591	233987	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.030000	0.547264	-35(GCTTTAATGCTG,+,0.00)
mm_91109.1	chr10	19185746	19185946	-	1	NA	NA	NA	18608	NR_038022	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.015000	0.472637	
mm_75171.1	chr8	36732042	36732242	-	1	NA	NA	NA	912	NM_001194941	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.025000	0.592040	
mm_101749.1	chr11	43379359	43379559	-	1	NA	NA	NA	-4998	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.020000	0.472637	
mm_154283.1	chr19	60860558	60860758	-	1	NA	NA	NA	772	NM_053198	94281	Mm.48179	NM_053198	ENSMUSG00000063698	Sfxn4	-	sideroflexin 4	protein-coding	0.010000	0.353234	86(GGCTCTAAATAC,-,0.00)
mm_96682.1	chr11	69580193	69580393	+	1	NA	NA	NA	-66	NM_011640	22059	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.035000	0.562189	
mm_87986.1	chr10	64017670	64017870	+	1	NA	NA	NA	72485	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.000000	0.373134	
mm_126873.1	chr15	89377622	89377822	+	1	NA	NA	NA	-685	NM_138302	72962	Mm.287977	NM_138302	ENSMUSG00000022615	Tymp	2900072D10Rik|Ecgf1|PD-ECGF|PDECGF|Pdgfec	thymidine phosphorylase	protein-coding	0.035000	0.601990	
mm_22327.1	chr2	180642619	180642819	-	1	NA	NA	NA	-28	NM_178254	277353	Mm.473700	NM_178254	ENSMUSG00000038932	Tcfl5	AV260129|Figlb|Sosf1	transcription factor-like 5 (basic helix-loop-helix)	protein-coding	0.165000	0.771144	
mm_108824.1	chr12	95709604	95709804	+	1	NA	NA	NA	17478	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.010000	0.442786	
mm_116282.1	chr13	34993108	34993308	-	1	NA	NA	NA	936	NM_011868	23986	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0.005000	0.457711	
mm_7758.1	chr1	131136323	131136523	-	1	NA	NA	NA	1811	NM_145508	226419	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.025000	0.442786	
mm_122223.1	chr14	32464671	32464871	-	1	NA	NA	NA	79	NM_021712	20508	Mm.190503	NM_021712	ENSMUSG00000100241	Slc18a3	VAChT|VAT	solute carrier family 18 (vesicular monoamine), member 3	protein-coding	0.110000	0.711443	
mm_51327.1	chr6	72355356	72355556	+	1	NA	NA	NA	-27	NM_144916	232086	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	0.140000	0.791045	-15(CCCTTTAAACCT,+,0.00)
mm_18795.1	chr2	73892062	73892262	-	1	NA	NA	NA	477	NM_001284371	11909	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0.095000	0.681592	
mm_71577.1	chr8	54550331	54550531	+	1	NA	NA	NA	100	NM_029569	76294	Mm.33171	NM_029569	ENSMUSG00000031519	Asb5	1110018D09Rik	ankyrin repeat and SOCs box-containing 5	protein-coding	0.025000	0.452736	
mm_99109.1	chr11	100133666	100133866	+	1	NA	NA	NA	2183	NM_008469	16665	Mm.440010	NM_008469	ENSMUSG00000054146	Krt15	AI528832|K15|Krt1-15	keratin 15	protein-coding	0.015000	0.497512	43(CCATTTAGAGAC,+,0.00)
mm_61035.1	chr7	49608630	49608830	+	1	NA	NA	NA	28105	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.020000	0.402985	
mm_25892.1	chr3	131110309	131110509	+	1	NA	NA	NA	112	NM_001276402	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.120000	0.716418	
mm_107899.1	chr12	70825403	70825603	+	1	NA	NA	NA	-11	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.130000	0.741294	
mm_73952.1	chr8	120265715	120265915	+	1	NA	NA	NA	-37585	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.005000	0.522388	
mm_58327.1	chr6	146577313	146577513	-	1	NA	NA	NA	422	NM_138757	71177	Mm.271774	NM_138757	ENSMUSG00000040250	Asun	4933424B01Rik|Spata30	asunder, spermatogenesis regulator	protein-coding	0.115000	0.656716	
mm_168672.1	chr1	193632786	193632986	+	1	NA	NA	NA	-125356	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.065000	0.492537	
mm_92544.1	chr10	79711568	79711768	-	1	NA	NA	NA	-4966	NM_008226	15166	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	0.015000	0.547264	
mm_8019.1	chr1	134955832	134956032	-	1	NA	NA	NA	8	NM_001081307	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.075000	0.666667	
mm_114185.1	chr13	55652837	55653037	+	1	NA	NA	NA	17938	NM_001282055	212880	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	0.015000	0.407960	
mm_154704.1	chrX	8272154	8272354	+	1	NA	NA	NA	873	NM_172479	209837	Mm.6055	NM_172479	ENSMUSG00000031170	Slc38a5	C81234|E330031E14|JM24|SN2	solute carrier family 38, member 5	protein-coding	0.020000	0.547264	
mm_139560.1	chr17	56883896	56884096	+	1	NA	NA	NA	8363	NM_030141	78625	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0.030000	0.577114	
mm_78692.1	chr9	40804645	40804845	+	1	NA	NA	NA	3472	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.015000	0.442786	
mm_145385.1	chr18	57132972	57133172	+	1	NA	NA	NA	-18	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.050000	0.616915	
mm_21730.1	chr2	164743040	164743240	-	1	NA	NA	NA	127	NM_027961	71856	Mm.330770	NM_027961	ENSMUSG00000076434	Wfdc3	1700015L13Rik|1700127F16Rik	WAP four-disulfide core domain 3	protein-coding	0.005000	0.502488	
mm_10453.1	chr2	14279481	14279681	+	1	NA	NA	NA	18578	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.010000	0.422886	80(GTCTTTAAGAGA,-,0.00),81(TCTTTAAGAGAG,+,0.00)
mm_34845.1	chr4	155414837	155415037	+	1	NA	NA	NA	5747	NM_001166029	544678	Mm.472798	NM_177674	ENSMUSG00000078490	Cfap74	2010015L04Rik|A530045M11	cilia and flagella associated protein 74	protein-coding	0.015000	0.477612	
mm_63516.1	chr7	127876809	127877009	+	1	NA	NA	NA	-86	NM_146259	244219	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.065000	0.592040	
mm_101408.1	chr11	27507863	27508063	-	1	NA	NA	NA	722855	NR_002890	654472	Mm.347777	NR_002890		Gm12070	OTTMUSG00000005300	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.020000	0.512438	
mm_99039.1	chr11	98960646	98960846	+	1	NA	NA	NA	275	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.085000	0.686567	
mm_96368.1	chr11	67201649	67201849	+	1	NA	NA	NA	1635	NM_030679	17879	Mm.477065	NM_030679	ENSMUSG00000056328	Myh1	A530084A17Rik|IId|IId/x|MHC-2X/D|MHC2X/D|MYHC-IIX|MdMs|MyHC-IId/x|MyHC-IIx/d|Myhs-f|Myhs-f2|Myhsf2	myosin, heavy polypeptide 1, skeletal muscle, adult	protein-coding	0.000000	0.437811	
mm_66208.1	chr7	34305431	34305631	-	1	NA	NA	NA	-19922	NM_172741	233103	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	0.015000	0.452736	
mm_43082.1	chr5	124447070	124447270	+	1	NA	NA	NA	466	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.015000	0.482587	
mm_111195.1	chr12	84193855	84194055	-	1	NA	NA	NA	60	NM_001163502	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.075000	0.601990	
mm_30121.1	chr3	141211737	141211937	-	1	NA	NA	NA	518	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding	0.065000	0.567164	
mm_80220.1	chr9	72551024	72551224	+	1	NA	NA	NA	18884	NM_001033536	319758	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	0.005000	0.263682	22(GCTTATATACCA,+,0.00)
mm_3570.1	chr1	150449063	150449263	+	1	NA	NA	NA	17002	NM_021400	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.025000	0.393035	
mm_159287.1	chr2	170131016	170131216	-	1	NA	NA	NA	104	NM_001033299	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.150000	0.820896	
mm_119605.1	chr14	51095166	51095366	+	1	NA	NA	NA	-734	NM_007447	11727	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	0.025000	0.507463	
mm_147165.1	chr18	36726113	36726313	-	1	NA	NA	NA	602	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.075000	0.557214	
mm_88252.1	chr10	73171231	73171431	+	1	NA	NA	NA	-84626	NR_040646	327768	Mm.417745	NR_040646		A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0.010000	0.363184	
mm_19792.1	chr2	109224759	109224959	-	1	NA	NA	NA	53431	NM_029790	76894	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.005000	0.393035	74(GCTTTTAAATCC,+,0.00)
mm_116955.1	chr13	56135852	56136052	-	1	NA	NA	NA	-402	NM_001159513	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.030000	0.522388	11(GTATTTAAAAAG,-,0.00)
mm_12396.1	chr2	70091829	70092029	+	1	NA	NA	NA	52803	NM_177376	329421	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0.005000	0.437811	-32(TCTTTTATGCAC,+,0.00)
mm_88259.1	chr10	73821806	73822006	+	1	NA	NA	NA	39	NM_001142735	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0.030000	0.552239	-75(CTGTATAAAAGC,-,0.00)
mm_135172.1	chr16	35932673	35932873	-	1	NA	NA	NA	-5697	NM_030253	80285	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.030000	0.497512	
mm_16946.1	chr2	15054969	15055169	-	1	NA	NA	NA	-197	NM_001165943	74455	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	0.100000	0.686567	
mm_154956.1	chrX	36795502	36795702	+	1	NA	NA	NA	5	NM_007451	11740	Mm.371544	NM_007451	ENSMUSG00000016319	Slc25a5	Ant2	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	protein-coding	0.090000	0.686567	16(CGCTATATAAGT,-,0.00)
mm_4795.1	chr1	184732694	184732894	+	1	NA	NA	NA	-301	NM_008250	15284	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.075000	0.681592	
mm_147789.1	chr18	61646219	61646419	-	1	NA	NA	NA	1575	NR_029557	387163		NR_029557	ENSMUSG00000065592	Mir145a	Mir145|Mirn145|mir-145a|mmu-mir-145|mmu-mir-145a	microRNA 145a	ncRNA	0.010000	0.542289	
mm_100820.1	chr11	5253617	5253817	-	1	NA	NA	NA	-881	NR_037240	100526548		NR_037240	ENSMUSG00000093169	Mir3079	mmu-mir-3079	microRNA 3079	ncRNA	0.015000	0.467662	
mm_155824.1	chrX	100729721	100729921	+	1	NA	NA	NA	-26	NM_023608	71584	Mm.283495	NM_023608	ENSMUSG00000019359	Gdpd2	9130017L10Rik|Gde3|Obdpf	glycerophosphodiester phosphodiesterase domain containing 2	protein-coding	0.005000	0.597015	
mm_92360.1	chr10	75938291	75938491	-	1	NA	NA	NA	2281	NM_001277132	333670	Mm.291320	NM_001037714	ENSMUSG00000050157	Gm867	Gm736	predicted gene 867	protein-coding	0.020000	0.482587	
mm_67067.1	chr7	67757524	67757724	-	1	NA	NA	NA	2118	NM_183312	233335	Mm.60526	NM_183312	ENSMUSG00000030554	Synm	4930412K21Rik|AI852401|Dmn|E130104F11|Syn|Synemin	synemin, intermediate filament protein	protein-coding	0.005000	0.422886	
mm_10811.1	chr2	24350023	24350223	+	1	NA	NA	NA	4752	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.000000	0.407960	56(GCACTTTTAAGG,-,0.00)
mm_37406.1	chr4	122455226	122455426	-	1	NA	NA	NA	-233933	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	0.100000	0.736318	
mm_69214.1	chr7	127512260	127512460	-	1	NA	NA	NA	377	NM_001304266	100043597	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	0.105000	0.741294	
mm_91267.1	chr10	23787101	23787301	-	1	NA	NA	NA	8	NM_011295	20042	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	0.115000	0.656716	-30(GCTTAAATACCG,+,0.00)
mm_126626.1	chr15	83389518	83389718	+	1	NA	NA	NA	-22321	NR_027980	69291	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0.015000	0.507463	
mm_155772.1	chrX	96255549	96255749	+	1	NA	NA	NA	12832	NR_029801	723814		NR_029801	ENSMUSG00000076066	Mir223	Mirn223|miR-223|mmu-mir-223	microRNA 223	ncRNA	0.005000	0.412935	
mm_125335.1	chr15	38951020	38951220	+	1	NA	NA	NA	17211	NM_080640	118452	Mm.233837	NM_080640		Baalc	2810457D07Rik	brain and acute leukemia, cytoplasmic	protein-coding	0.010000	0.452736	
mm_21768.1	chr2	164844580	164844780	-	1	NA	NA	NA	10907	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.040000	0.582090	
mm_91864.1	chr10	59441746	59441946	-	1	NA	NA	NA	-67	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.035000	0.502488	
mm_51105.1	chr6	67277723	67277923	+	1	NA	NA	NA	10844	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.025000	0.383085	
mm_168004.1	chrY	1286399	1286599	-	1	NA	NA	NA	114	NM_012008	26900	Mm.302938	NM_012008	ENSMUSG00000069045	Ddx3y	8030469F12Rik|D1Pas1-rs1|Dby	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	protein-coding	0.050000	0.472637	
mm_125428.1	chr15	43523959	43524159	+	1	NA	NA	NA	46830	NM_025736	66736	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	0.000000	0.293532	40(GCCTATATAGCA,+,0.00)
mm_21732.1	chr2	164743097	164743297	-	1	NA	NA	NA	70	NM_027961	71856	Mm.330770	NM_027961	ENSMUSG00000076434	Wfdc3	1700015L13Rik|1700127F16Rik	WAP four-disulfide core domain 3	protein-coding	0.010000	0.487562	
mm_66568.1	chr7	45298111	45298311	-	1	NA	NA	NA	15338	NM_001033176	76713	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0.015000	0.507463	
mm_155534.1	chrX	74303766	74303966	+	1	NA	NA	NA	-1146	NM_010273	14567	Mm.205830	NM_010273	ENSMUSG00000015291	Gdi1	GDIA|GDIalpha	guanosine diphosphate (GDP) dissociation inhibitor 1	protein-coding	0.015000	0.482587	
mm_72734.1	chr8	85083345	85083545	+	1	NA	NA	NA	176	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.065000	0.616915	
mm_18151.1	chr2	45068314	45068514	-	1	NA	NA	NA	41863	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.020000	0.472637	
mm_147164.1	chr18	36726079	36726279	-	1	NA	NA	NA	636	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.085000	0.567164	
mm_91016.1	chr10	16425022	16425222	-	1	NA	NA	NA	633345	NR_131087	77538	Mm.128235	NR_131087		C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0.005000	0.407960	
mm_88494.1	chr10	77836199	77836399	+	1	NA	NA	NA	352	NM_001024709	544710	Mm.441890	NM_001024709		Krtap10-10	EG544710	keratin associated protein 10-10	protein-coding	0.000000	0.606965	
mm_29874.1	chr3	130901402	130901602	-	1	NA	NA	NA	-171104	NM_001005859	68436	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.030000	0.557214	
mm_20773.1	chr2	143081600	143081800	-	1	NA	NA	NA	3208	NM_020595	57329	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	0.005000	0.278607	
mm_140973.1	chr17	24696057	24696257	-	1	NA	NA	NA	-1	NM_023040	11692	Mm.28124	NM_023040	ENSMUSG00000040888	Gfer	Alr|ERV1	growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)	protein-coding	0.155000	0.825871	
mm_53566.1	chr6	137252308	137252508	+	1	NA	NA	NA	109	NM_011216	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.075000	0.656716	
mm_62751.1	chr7	111325881	111326081	+	1	NA	NA	NA	-203306	NR_015573	75479	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0.000000	0.358209	
mm_112903.1	chr13	20899551	20899751	+	1	NA	NA	NA	105538	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.477612	
mm_93318.1	chr10	99107957	99108157	-	1	NA	NA	NA	-78	NM_015737	14426	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.040000	0.597015	
mm_1894.1	chr1	85707980	85708180	+	1	NA	NA	NA	28526	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.030000	0.442786	
mm_102167.1	chr11	53859114	53859314	-	1	NA	NA	NA	42	NR_033332	622459	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115|OTTMUSG00000005650	predicted gene 12216	ncRNA	0.100000	0.631841	-23(CTTTTAATAGCT,+,0.00)
mm_124899.1	chr15	10486000	10486200	+	1	NA	NA	NA	62	NM_001289447	19355	Mm.38376	NM_011232	ENSMUSG00000022248	Rad1	mRAD1	RAD1 checkpoint DNA exonuclease	protein-coding	0.075000	0.641791	
mm_47546.1	chr5	124350818	124351018	-	1	NA	NA	NA	3710	NM_013812	13445	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0.015000	0.542289	
mm_75302.1	chr8	41112701	41112901	-	1	NA	NA	NA	1866	NM_001286413	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.010000	0.457711	
mm_166056.1	chr4	132796306	132796506	-	1	NA	NA	NA	-42	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.070000	0.626866	
mm_79469.1	chr9	56864933	56865133	+	1	NA	NA	NA	-71	NM_139001	121021	Mm.41329	NM_139001	ENSMUSG00000032911	Cspg4	4732461B14Rik|AN2|NG2	chondroitin sulfate proteoglycan 4	protein-coding	0.080000	0.636816	-93(GCCCCTTTAAGA,-,0.00)
mm_60448.1	chr7	44477205	44477405	+	1	NA	NA	NA	6958	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.497512	
mm_45427.1	chr5	67094775	67094975	-	1	NA	NA	NA	4251	NM_008888	18935	Mm.62505	NM_008888	ENSMUSG00000012520	Phox2b	Dilp1|NBPhox|Pmx2b|Px2b	paired-like homeobox 2b	protein-coding	0.015000	0.358209	-5(TATTTTAAAAGG,-,0.00)
mm_61395.1	chr7	73255881	73256081	+	1	NA	NA	NA	-54399	NR_105062	100505025	Mm.445959	NR_105062	ENSMUSG00000108530	LOC100505025	-	uncharacterized LOC100505025	ncRNA	0.005000	0.477612	
mm_164341.1	chr16	14705527	14705727	+	1	NA	NA	NA	-232	NM_011415	20583	Mm.4272	NM_011415	ENSMUSG00000022676	Snai2	Slug|Slugh|Snail2	snail family zinc finger 2	protein-coding	0.040000	0.507463	
mm_12710.1	chr2	76675865	76676065	+	1	NA	NA	NA	650	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.010000	0.368159	
mm_108864.1	chr12	98920553	98920753	+	1	NA	NA	NA	41	NM_198311	76260	Mm.282660	NM_029553	ENSMUSG00000021013	Ttc8	0610012F22Rik|AV001447|BBS8	tetratricopeptide repeat domain 8	protein-coding	0.075000	0.656716	
mm_87823.1	chr10	60349222	60349422	+	1	NA	NA	NA	2471	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.015000	0.567164	
mm_98898.1	chr11	97999438	97999638	+	1	NA	NA	NA	-3365	NM_207231	217151	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.020000	0.507463	
mm_49058.1	chr6	5163579	5163779	+	1	NA	NA	NA	30267	NM_011134	18979	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.000000	0.437811	
mm_96183.1	chr11	61660948	61661148	+	1	NA	NA	NA	7727	NM_027817	71520	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.005000	0.457711	
mm_168752.1	chr12	115920662	115920862	-	1	NA	NA	NA	-126962	NM_001004066	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0.005000	0.432836	
mm_44442.1	chr5	21645476	21645676	-	1	NA	NA	NA	29	NM_001199632	320118	Mm.442295	NM_177076	ENSMUSG00000048520	Fbxl13	4921539K22Rik	F-box and leucine-rich repeat protein 13	protein-coding	0.045000	0.527363	
mm_74374.1	chr8	128504372	128504572	+	1	NA	NA	NA	145231	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.000000	0.338308	27(GGGTATATAAAA,-,0.00)
mm_162545.1	chr1	170689911	170690111	+	1	NA	NA	NA	45479	NM_177068	320078	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.030000	0.507463	
mm_158167.1	chrX	103605515	103605715	-	1	NA	NA	NA	18139	NR_028381	78878	Mm.259724	NR_028380	ENSMUSG00000086370	Ftx	B230206F22Rik|BB219131|NCRNA00182|Thcytx	Ftx transcript, Xist regulator (non-protein coding)	ncRNA	0.025000	0.452736	
mm_71908.1	chr8	70083361	70083561	+	1	NA	NA	NA	-68	NM_177900	330790	Mm.152048	NM_177900	ENSMUSG00000007594	Hapln4	9330174O11|Bral2|Lpr4	hyaluronan and proteoglycan link protein 4	protein-coding	0.110000	0.716418	-34(CACCTTTAAAGC,-,0.00),-33(ACCTTTAAAGCG,+,0.00),-32(CCTTTAAAGCGC,+,0.00)
mm_150932.1	chr19	46305666	46305866	+	1	NA	NA	NA	71	NM_019408	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.075000	0.686567	
mm_27063.1	chr3	27710340	27710540	-	1	NA	NA	NA	-1	NM_173182	72007	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.135000	0.805970	
mm_171855.1	chr5	20127226	20127426	-	1	NA	NA	NA	219808	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.075000	0.696517	
mm_84869.1	chr9	79599056	79599256	-	1	NA	NA	NA	-79854	NR_045336	100038575	Mm.367838	NR_045336	ENSMUSG00000111765	Gm10635	ENSMUSG00000074174	predicted gene 10635	ncRNA	0.000000	0.283582	
mm_36888.1	chr4	107307045	107307245	-	1	NA	NA	NA	23	NM_007860	13370	Mm.148342	NM_007860	ENSMUSG00000034785	Dio1	5DI|D1|ITDI1|TXDI1	deiodinase, iodothyronine, type I	protein-coding	0.010000	0.611940	
mm_45081.1	chr5	43981688	43981888	-	1	NA	NA	NA	11	NM_008009	14181	Mm.46053	NM_008009	ENSMUSG00000048373	Fgfbp1	FGF-BP|FGF-BP1|FGFBP-1	fibroblast growth factor binding protein 1	protein-coding	0.010000	0.512438	
mm_23043.1	chr3	34764788	34764988	+	1	NA	NA	NA	-7187	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA	0.010000	0.457711	
mm_78225.1	chr9	21588404	21588604	+	1	NA	NA	NA	-4218	NM_178619	69773	Mm.39704	NM_178619	ENSMUSG00000048429	Timm29	1810026J23Rik	translocase of inner mitochondrial membrane 29	protein-coding	0.005000	0.606965	
mm_64559.1	chr7	144837394	144837594	+	1	NA	NA	NA	-1118	NM_008007	14174	Mm.4947	NM_008007	ENSMUSG00000031074	Fgf3	Fgf-3|Int-2|Int-P	fibroblast growth factor 3	protein-coding	0.015000	0.592040	
mm_111196.1	chr12	84193893	84194093	-	1	NA	NA	NA	22	NM_001163502	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.080000	0.656716	
mm_110625.1	chr12	57197128	57197328	-	1	NA	NA	NA	244	NM_172577	217593	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0.040000	0.567164	
mm_34400.1	chr4	145213850	145214050	+	1	NA	NA	NA	-18945	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.000000	0.502488	
mm_43361.1	chr5	135217937	135218137	+	1	NA	NA	NA	30714	NM_011714	22385	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.020000	0.482587	
mm_15383.1	chr2	156547492	156547692	+	1	NA	NA	NA	16	NM_001164818	68295	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	0.100000	0.621891	
mm_119899.1	chr14	54938530	54938730	+	1	NA	NA	NA	2133	NM_029390	67272	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	0.025000	0.587065	
mm_2425.1	chr1	95314056	95314256	+	1	NA	NA	NA	528	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.080000	0.681592	
mm_139037.1	chr17	46202697	46202897	+	1	NA	NA	NA	-58	NM_028198	72322	Mm.275039	NM_028198	ENSMUSG00000067150	Xpo5	2410004H11Rik|2700038C24Rik|AI648907|AW549301|Exp5|RanBp21|mKIAA1291	exportin 5	protein-coding	0.130000	0.716418	
mm_21222.1	chr2	155826512	155826712	-	1	NA	NA	NA	313	NM_010579	16418	Mm.271674	NM_010579	ENSMUSG00000027613	Eif6	1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding	0.075000	0.626866	
mm_58649.1	chr7	6285524	6285724	+	1	NA	NA	NA	-956	NM_001024928	384763	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0.010000	0.447761	
mm_58578.1	chr7	4915088	4915288	+	1	NA	NA	NA	-29	NM_170759	232816	Mm.27442	NM_170759	ENSMUSG00000074406	Zfp628	Zec|Znf628	zinc finger protein 628	protein-coding	0.125000	0.721393	
mm_36376.1	chr4	76748136	76748336	-	1	NA	NA	NA	1463659	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.005000	0.378109	
mm_42302.1	chr5	114707722	114707922	+	1	NA	NA	NA	43	NM_029992	77832	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	0.125000	0.676617	
mm_47499.1	chr5	124034454	124034654	-	1	NA	NA	NA	-2294	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.030000	0.507463	
mm_117470.1	chr13	76098487	76098687	-	1	NA	NA	NA	73	NM_029847	77041	Mm.196399	NM_029847	ENSMUSG00000021592	Arsk	2810429K17Rik|4833414G15Rik	arylsulfatase K	protein-coding	0.045000	0.552239	
mm_140650.1	chr17	12691920	12692120	-	1	NA	NA	NA	-16182	NM_009202	20517	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.025000	0.462687	
mm_26508.1	chr3	145810384	145810584	+	1	NA	NA	NA	51792	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.015000	0.497512	
mm_46458.1	chr5	105117992	105118192	-	1	NA	NA	NA	-7800	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.005000	0.407960	-39(GCCTTTAGAGAA,+,0.00)
mm_85844.1	chr9	110624300	110624500	-	1	NA	NA	NA	-7	NM_026012	67169	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	0.055000	0.661692	
mm_152035.1	chr19	6118124	6118324	-	1	NA	NA	NA	362	NM_133678	66406	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.145000	0.751244	
mm_74824.1	chr8	23095567	23095767	-	1	NA	NA	NA	37408	NR_102385	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.020000	0.348259	
mm_48942.1	chr6	4539422	4539622	+	1	NA	NA	NA	33904	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.035000	0.507463	-93(GTCTATTTAAGA,-,0.00)
mm_78216.1	chr9	21526128	21526328	+	1	NA	NA	NA	51	NM_001198794	382062	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	0.020000	0.582090	
mm_18543.1	chr2	64975567	64975767	-	1	NA	NA	NA	47099	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0.010000	0.477612	
mm_40862.1	chr5	73651238	73651438	+	1	NA	NA	NA	-42	NM_178387	73472	Mm.87067	NM_178387	ENSMUSG00000029155	Spata18	1700067I02Rik	spermatogenesis associated 18	protein-coding	0.100000	0.721393	12(GGGTATTTATGG,-,0.00),14(GTATTTATGGCC,+,0.00)
mm_51112.1	chr6	67555533	67555733	+	1	NA	NA	NA	10066	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.000000	0.482587	
mm_6523.1	chr1	74544191	74544391	-	1	NA	NA	NA	-5	NM_176972	319651	Mm.66568	NM_176972	ENSMUSG00000033364	Usp37	4932415L06Rik|C330008N13Rik	ubiquitin specific peptidase 37	protein-coding	0.015000	0.492537	
mm_81591.1	chr9	110476970	110477170	+	1	NA	NA	NA	76	NM_001163569	16578	Mm.42170	NM_010628	ENSMUSG00000032489	Kif9	-	kinesin family member 9	protein-coding	0.060000	0.616915	
mm_92210.1	chr10	68212101	68212301	-	1	NA	NA	NA	66525	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.020000	0.482587	75(ACTTTAATGGGG,+,0.00)
mm_77299.1	chr8	117157694	117157894	-	1	NA	NA	NA	-341	NM_001081151	209239	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0.105000	0.626866	
mm_61467.1	chr7	75611697	75611897	+	1	NA	NA	NA	156263	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.020000	0.412935	
mm_63888.1	chr7	137437848	137438048	+	1	NA	NA	NA	274	NR_033611	620016	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	OTTMUSG00000007920	glutaredoxin 3 pseudogene	pseudo	0.105000	0.721393	
mm_27128.1	chr3	32341121	32341321	-	1	NA	NA	NA	-24268	NR_027966	67576	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	0.020000	0.432836	
mm_31188.1	chr4	43562542	43562742	+	1	NA	NA	NA	8	NM_013497	12913	Mm.12407	NM_013497	ENSMUSG00000028466	Creb3	AU044960|AW538053|C80076|LZIP|LZIP-1|LZIP-2|Luman	cAMP responsive element binding protein 3	protein-coding	0.060000	0.597015	
mm_2266.1	chr1	91179940	91180140	+	1	NA	NA	NA	218	NM_001168392	51801	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	0.125000	0.786070	
mm_47322.1	chr5	122469413	122469613	-	1	NA	NA	NA	32712	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.025000	0.522388	
mm_74537.1	chr8	9762383	9762583	-	1	NA	NA	NA	8540	NM_173446	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding	0.000000	0.422886	
mm_69496.1	chr7	134225062	134225262	-	1	NA	NA	NA	-65	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.120000	0.661692	
mm_17991.1	chr2	38036742	38036942	-	1	NA	NA	NA	250542	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.000000	0.333333	
mm_151125.1	chr19	47915461	47915661	+	1	NA	NA	NA	3738	NM_001001738	414801	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER|mKIAA1754	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	0.020000	0.502488	72(CGGCTTAAAGGC,-,0.00)
mm_35763.1	chr4	46138266	46138466	-	1	NA	NA	NA	109	NM_173033	272027	Mm.331588	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	0.090000	0.666667	
mm_96507.1	chr11	68451545	68451745	+	1	NA	NA	NA	19520	NM_177320	320207	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik	phosphoinositide-3-kinase, regulatory subunit 5, p101	protein-coding	0.015000	0.482587	
mm_120150.1	chr14	60506462	60506662	+	1	NA	NA	NA	-128143	NM_001033272	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.040000	0.517413	
mm_130231.1	chr15	96460689	96460889	-	1	NA	NA	NA	54	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.155000	0.796020	
mm_56918.1	chr6	119388866	119389066	-	1	NA	NA	NA	28517	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.070000	0.542289	
mm_97516.1	chr11	78499697	78499897	+	1	NA	NA	NA	677	NM_011707	22370	Mm.3667	NM_011707	ENSMUSG00000017344	Vtn	AI256434|Vn	vitronectin	protein-coding	0.060000	0.567164	
mm_79826.1	chr9	64546798	64546998	+	1	NA	NA	NA	161272	NM_001134399	214058	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	0.010000	0.557214	
mm_121736.1	chr14	18331644	18331844	-	1	NA	NA	NA	100	NM_009455	22194	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	0.090000	0.706468	
mm_51785.1	chr6	88199627	88199827	+	1	NA	NA	NA	1063	NM_008090	14461	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.100000	0.651741	
mm_11808.1	chr2	43917447	43917647	+	1	NA	NA	NA	147777	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.005000	0.462687	58(CTGTCTAAAAAG,-,0.00)
mm_32188.1	chr4	101185474	101185674	+	1	NA	NA	NA	79708	NM_146145	16451	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.010000	0.398010	
mm_103643.1	chr11	78965644	78965844	-	1	NA	NA	NA	19180	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.030000	0.547264	
mm_77705.1	chr8	126591540	126591740	-	1	NA	NA	NA	1796	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.025000	0.582090	
mm_104894.1	chr11	99591278	99591478	-	1	NA	NA	NA	-1	NM_001085526	435273		NM_001085526	ENSMUSG00000078131	Krtap1-3	-	keratin associated protein 1-3	protein-coding	0.005000	0.427861	-33(GATTATAAAAAG,-,0.00)
mm_21921.1	chr2	166905763	166905963	-	1	NA	NA	NA	-233	NM_023565	110750	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0.060000	0.522388	
mm_114205.1	chr13	56104227	56104427	+	1	NA	NA	NA	31223	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.030000	0.562189	
mm_133373.1	chr16	84709808	84710008	+	1	NA	NA	NA	-3115	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.025000	0.432836	
mm_140044.1	chr17	74489501	74489701	+	1	NA	NA	NA	108	NM_026417	67864	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	0.115000	0.741294	
mm_29230.1	chr3	107213369	107213569	-	1	NA	NA	NA	8263	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.502488	
mm_52376.1	chr6	113077537	113077737	+	1	NA	NA	NA	-2	NM_028385	72895	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0.105000	0.711443	-78(CCTTTTCTGCCC,+,0.00)
mm_138270.1	chr17	34604702	34604902	+	1	NA	NA	NA	-1059	NM_001163379	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.030000	0.527363	
mm_95995.1	chr11	59208242	59208442	+	1	NA	NA	NA	-19	NM_024210	67862	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	0.125000	0.646766	
mm_166659.1	chr6	88060770	88060970	+	1	NA	NA	NA	-15600	NM_009005	19349	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.005000	0.487562	
mm_109385.1	chr12	109736637	109736837	+	1	NA	NA	NA	1118	NR_030559	100124484		NR_030559	ENSMUSG00000077925	Mir453	Mirn453|mmu-mir-453	microRNA 453	ncRNA	0.015000	0.427861	
mm_126275.1	chr15	79165949	79166149	+	1	NA	NA	NA	-17	NR_029470	100041655	Mm.483310	NR_029470	ENSMUSG00000075555	Gm10863	ENSMUSG00000075555	predicted gene 10863	ncRNA	0.060000	0.572139	
mm_41241.1	chr5	88765096	88765296	+	1	NA	NA	NA	183	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.115000	0.696517	
mm_28727.1	chr3	95710598	95710798	-	1	NA	NA	NA	-22781	NM_001301705	229595	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.000000	0.442786	-34(GTCTATATAGCC,+,0.00)
mm_43268.1	chr5	130369424	130369624	+	1	NA	NA	NA	66	NM_181045	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.050000	0.592040	
mm_55431.1	chr6	65779619	65779819	-	1	NA	NA	NA	757	NM_029549	70779	Mm.263355	NM_027547	ENSMUSG00000029913	Prdm5	4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2	PR domain containing 5	protein-coding	0.005000	0.422886	
mm_1455.1	chr1	67230675	67230875	+	1	NA	NA	NA	107748	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.000000	0.293532	55(ACTTATATAGTC,+,0.00)
mm_99713.1	chr11	106256030	106256230	+	1	NA	NA	NA	-55	NM_008950	19184	Mm.272361	NM_008950	ENSMUSG00000020708	Psmc5	mSUG1	protease (prosome, macropain) 26S subunit, ATPase 5	protein-coding	0.075000	0.601990	
mm_8953.1	chr1	164458254	164458454	-	1	NA	NA	NA	1	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.110000	0.671642	
mm_113383.1	chr13	33027314	33027514	+	1	NA	NA	NA	0	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	0.000000	0.477612	-42(CCTCTAAGGGCC,+,0.00)
mm_92261.1	chr10	71058422	71058622	-	1	NA	NA	NA	101168	NM_031397	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	BicC family RNA binding protein 1	protein-coding	0.010000	0.407960	
mm_99485.1	chr11	102665447	102665647	+	1	NA	NA	NA	-38	NM_001127576	268491	Mm.447643	NM_001127576	ENSMUSG00000051455	Meioc	Gm1564|Gm663	meiosis specific with coiled-coil domain	protein-coding	0.130000	0.751244	
mm_10616.1	chr2	19344222	19344422	+	1	NA	NA	NA	5	NR_126563	108871	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.010000	0.497512	
mm_1628.1	chr1	74423830	74424030	+	1	NA	NA	NA	14546	NM_009509	22349	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.015000	0.562189	
mm_97846.1	chr11	83066324	83066524	+	1	NA	NA	NA	1312	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.015000	0.497512	
mm_109486.1	chr12	111442329	111442529	+	1	NA	NA	NA	-232	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.065000	0.606965	
mm_141502.1	chr17	31633065	31633265	-	1	NA	NA	NA	4040	NM_144855	12411	Mm.206417	NM_144855	ENSMUSG00000024039	Cbs	AI047524|AI303044|HIP4	cystathionine beta-synthase	protein-coding	0.010000	0.462687	
mm_26835.1	chr3	11214107	11214307	-	1	NA	NA	NA	630152	NR_040751	100038545	Mm.388494	NR_040751	ENSMUSG00000104015	Gm10745	ENSMUSG00000074696	predicted gene 10745	ncRNA	0.005000	0.532338	
mm_166055.1	chr4	132794191	132794391	+	1	NA	NA	NA	2073	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.020000	0.502488	
mm_13394.1	chr2	103969998	103970198	+	1	NA	NA	NA	-189	NM_008505	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.045000	0.482587	-90(CCGTTTAAAAAA,-,0.00)
mm_84655.1	chr9	71631008	71631208	-	1	NA	NA	NA	-38748	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	0.005000	0.557214	
mm_61955.1	chr7	90207811	90208011	+	1	NA	NA	NA	57521	NM_029256	75338	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.005000	0.373134	
mm_59258.1	chr7	24870036	24870236	+	1	NA	NA	NA	79	NM_027732	71241	Mm.66855	NM_027732	ENSMUSG00000011349	Dmrtc2	4933432E21Rik|Dmrt7	doublesex and mab-3 related transcription factor like family C2	protein-coding	0.070000	0.621891	
mm_65325.1	chr7	24972498	24972698	-	1	NA	NA	NA	130	NM_010261	14470	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.055000	0.636816	
mm_152103.1	chr19	6925216	6925416	-	1	NA	NA	NA	64	NM_001039494	67077	Mm.251306	NM_001039494	ENSMUSG00000050623	Tex40	1700019N12Rik|A430107B04Rik|MLZ-622	testis expressed 40	protein-coding	0.040000	0.562189	
mm_33540.1	chr4	130934420	130934620	+	1	NA	NA	NA	-9865	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.010000	0.582090	
mm_127210.1	chr15	99233797	99233997	+	1	NA	NA	NA	8921	NM_010601	16512	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0.045000	0.671642	
mm_101586.1	chr11	34544774	34544974	-	1	NA	NA	NA	230052	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.025000	0.363184	
mm_134688.1	chr16	22439632	22439832	-	1	NA	NA	NA	-162	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.095000	0.706468	
mm_138821.1	chr17	39847588	39847788	+	1	NA	NA	NA	4691	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.085000	0.547264	
mm_165044.1	chr19	39510730	39510930	+	1	NA	NA	NA	8	NM_010003	13098	Mm.42101	NM_010003	ENSMUSG00000025003	Cyp2c39	CYPIIC39	cytochrome P450, family 2, subfamily c, polypeptide 39	protein-coding	0.005000	0.402985	-14(TGCTATAAAAGG,-,0.00)
mm_146570.1	chr18	6515975	6516175	-	1	NA	NA	NA	33	NM_007935	13831	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1 (Drosophila)	protein-coding	0.115000	0.666667	
mm_164981.1	chr19	8839356	8839556	-	1	NA	NA	NA	128	NM_008144	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.005000	0.587065	
mm_49941.1	chr6	39871384	39871584	+	1	NA	NA	NA	-60548	NM_001010930	14548	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.070000	0.577114	
mm_138960.1	chr17	44192621	44192821	+	1	NA	NA	NA	4149	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	0.005000	0.373134	
mm_48069.1	chr5	136581586	136581786	-	1	NA	NA	NA	-14196	NM_001291238	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.030000	0.492537	
mm_164276.1	chr15	101857937	101858137	+	1	NA	NA	NA	-7251	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.000000	0.462687	
mm_40731.1	chr5	66150698	66150898	+	1	NA	NA	NA	180	NM_001291226	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.100000	0.656716	
mm_118685.1	chr14	22120340	22120540	+	1	NA	NA	NA	100728	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.477612	
mm_172582.1	chr8	122589604	122589804	+	1	NA	NA	NA	-12797	NM_009698	11821	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	0.055000	0.562189	
mm_35626.1	chr4	43454821	43455021	-	1	NA	NA	NA	-295	NM_007654	12517	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.015000	0.557214	
mm_115074.1	chr13	101664158	101664358	+	1	NA	NA	NA	28372	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.020000	0.497512	
mm_120190.1	chr14	61598147	61598347	+	1	NA	NA	NA	21	NM_001164220	66597	Mm.491258	NM_023233	ENSMUSG00000035235	Trim13	3110001L12Rik|CAR|LEU5|RNF77|Rfp2	tripartite motif-containing 13	protein-coding	0.015000	0.502488	-44(CTTTTTATAGCC,+,0.00),1(GCCTTTATGGAA,+,0.00)
mm_88378.1	chr10	76388742	76388942	+	1	NA	NA	NA	-173	NR_040580	67523	Mm.437833	NR_040580	ENSMUSG00000101695	1700094J05Rik	-	RIKEN cDNA 1700094J05 gene	ncRNA	0.025000	0.601990	
mm_108014.1	chr12	73593532	73593732	+	1	NA	NA	NA	8836	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.025000	0.522388	
mm_137164.1	chr17	23806995	23807195	+	1	NA	NA	NA	3908	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.085000	0.646766	
mm_87103.1	chr10	33158147	33158347	+	1	NA	NA	NA	74764	NM_029726	76757	Mm.338508	NM_029726	ENSMUSG00000019787	Trdn	2310045H21Rik|EG432451|TDN	triadin	protein-coding	0.005000	0.308458	15(TCCCTTAAAAAG,-,0.00),17(CCTTAAAAAGAA,+,0.00)
mm_158438.1	chrX	140062495	140062695	-	1	NA	NA	NA	-27	NM_001081668	279706	Mm.102590	NM_001081668	ENSMUSG00000072944	Nup62cl	Gm719	nucleoporin 62 C-terminal like	protein-coding	0.100000	0.651741	
mm_52746.1	chr6	120488996	120489196	+	1	NA	NA	NA	4711	NM_033567	94047	Mm.23088	NM_033567	ENSMUSG00000094626	Cecr6	AW048664	cat eye syndrome chromosome region, candidate 6	protein-coding	0.020000	0.577114	
mm_165937.1	chr4	74043334	74043534	-	1	NA	NA	NA	29831	NM_172869	242506	Mm.221597	NM_172869	ENSMUSG00000049122	Frmd3	4.1O|9430066I12Rik|EPB41L4O|P410	FERM domain containing 3	protein-coding	0.000000	0.442786	
mm_106171.1	chr11	116679124	116679324	-	1	NA	NA	NA	4627	NR_028570	100216538		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0.010000	0.527363	
mm_21940.1	chr2	167060324	167060524	-	1	NA	NA	NA	-2510	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.010000	0.437811	
mm_99312.1	chr11	101377126	101377326	+	1	NA	NA	NA	9510	NM_008061	14377	Mm.18064	NM_008061	ENSMUSG00000078650	G6pc	AW107337|G6Pase|G6pt|Glc-6-Pase	glucose-6-phosphatase, catalytic	protein-coding	0.020000	0.402985	
mm_73241.1	chr8	104170475	104170675	+	1	NA	NA	NA	62	NM_001141925	65115	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	0.135000	0.786070	
mm_116927.1	chr13	55571021	55571221	-	1	NA	NA	NA	-1	NM_145382	212483	Mm.35661	NM_145382	ENSMUSG00000021495	Fam193b	IRIZIO|Kiaa1931	family with sequence similarity 193, member B	protein-coding	0.150000	0.746269	
mm_161474.1	chr15	79765029	79765229	-	1	NA	NA	NA	9338	NM_017470	54152	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	0.015000	0.472637	
mm_49937.1	chr6	39573817	39574017	+	1	NA	NA	NA	41	NM_178873	57869	Mm.247957	NM_178873	ENSMUSG00000046947	Adck2	AA408112|BB006057	aarF domain containing kinase 2	protein-coding	0.095000	0.696517	-89(GCCCCTTTAAGG,-,0.00),-87(CCCTTTAAGGAG,+,0.00),-86(CCTTTAAGGAGC,+,0.00)
mm_169655.1	chr15	56886031	56886231	+	1	NA	NA	NA	-191585	NM_008216	15117	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding	0.040000	0.616915	
mm_50261.1	chr6	43382409	43382609	+	1	NA	NA	NA	-59920	NR_045988	319812	Mm.446393	NR_045988		9430018G01Rik	-	RIKEN cDNA 9430018G01 gene	ncRNA	0.010000	0.497512	
mm_38403.1	chr4	138972720	138972920	-	1	NA	NA	NA	-85	NM_029857	77056	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	0.045000	0.552239	
mm_55876.1	chr6	83512854	83513054	-	1	NA	NA	NA	-5985	NM_001162521	27369	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0.000000	0.497512	
mm_122684.1	chr14	52014890	52015090	-	1	NA	NA	NA	-432	NM_001253695	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.020000	0.557214	
mm_18754.1	chr2	73437125	73437325	-	1	NA	NA	NA	16664	NM_001289722	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.040000	0.696517	
mm_58068.1	chr6	136922110	136922310	-	1	NA	NA	NA	-30	NM_026983	69187	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding	0.000000	0.502488	
mm_121097.1	chr14	99314181	99314381	+	1	NA	NA	NA	15590	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.010000	0.343284	
mm_131930.1	chr16	23609916	23610116	+	1	NA	NA	NA	97	NM_023386	67775	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.015000	0.542289	
mm_27701.1	chr3	66981665	66981865	-	1	NA	NA	NA	6	NM_013665	20429	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0.015000	0.582090	
mm_92966.1	chr10	86057542	86057742	-	1	NA	NA	NA	35488	NM_001347151	69754	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	0.015000	0.507463	
mm_97234.1	chr11	75655815	75656015	+	1	NA	NA	NA	-100	NM_001080775	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.110000	0.711443	
mm_15252.1	chr2	154805161	154805361	+	1	NA	NA	NA	14151	NM_001139511	19383	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	0.010000	0.338308	
mm_86447.1	chr10	4266264	4266464	+	1	NA	NA	NA	35	NM_031185	83397	Mm.27481	NM_031185	ENSMUSG00000038587	Akap12	AI317366|SSeCKS|Srcs5|Tsga12	A kinase (PRKA) anchor protein (gravin) 12	protein-coding	0.045000	0.552239	-36(TCTTTTAAGGAG,+,0.00)
mm_84940.1	chr9	82975034	82975234	-	1	NA	NA	NA	355	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.165000	0.796020	
mm_156567.1	chrX	151906211	151906411	+	1	NA	NA	NA	-6035	NR_029732	387253		NR_029732	ENSMUSG00000065602	Mirlet7f-2	Mirlet7f2|Mirnlet7f2|let-7f-2	microRNA let7f-2	ncRNA	0.020000	0.542289	
mm_63153.1	chr7	123418117	123418317	+	1	NA	NA	NA	40235	NM_025304	30949	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0.010000	0.457711	
mm_47406.1	chr5	123132293	123132493	-	1	NA	NA	NA	236	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.090000	0.711443	
mm_150969.1	chr19	46500732	46500932	+	1	NA	NA	NA	-816	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.095000	0.606965	
mm_159746.1	chr5	75152836	75153036	+	1	NA	NA	NA	0	NM_001347719	18595	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.080000	0.606965	
mm_30301.1	chr3	149077151	149077351	-	1	NA	NA	NA	-122616	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.040000	0.482587	
mm_154419.1	chrM	16003	16203	+	1	NA	NA	NA	NA	NA									0.005000	0.373134	
mm_85634.1	chr9	107651574	107651774	-	1	NA	NA	NA	15725	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.010000	0.606965	
mm_140563.1	chr17	8283525	8283725	-	1	NA	NA	NA	-188	NM_018819	55951	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	0.120000	0.761194	
mm_105736.1	chr11	109298004	109298204	-	1	NA	NA	NA	77	NM_001165934	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0.075000	0.631841	
mm_116674.1	chr13	49215915	49216115	-	1	NA	NA	NA	11	NM_026738	68480	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.120000	0.741294	
mm_21317.1	chr2	157099046	157099246	-	1	NA	NA	NA	12091	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.005000	0.422886	
mm_132433.1	chr16	35871370	35871570	+	1	NA	NA	NA	-88	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.030000	0.452736	
mm_83959.1	chr9	57071792	57071992	-	1	NA	NA	NA	74	NR_045886	100038566	Mm.361900	NR_045886		Gm10658	ENSMUSG00000074284	predicted gene 10658	ncRNA	0.050000	0.512438	
mm_25902.1	chr3	131111424	131111624	+	1	NA	NA	NA	1227	NM_001276402	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.095000	0.631841	
mm_166145.1	chr5	3571462	3571662	+	1	NA	NA	NA	-154	NM_029843	77036	Mm.389069	NM_029843	ENSMUSG00000008307	1700109H08Rik	-	RIKEN cDNA 1700109H08 gene	protein-coding	0.015000	0.462687	
mm_124250.1	chr14	101640585	101640785	-	1	NA	NA	NA	-214	NM_001168592	66200	Mm.250474	NM_001033132	ENSMUSG00000075486	Commd6	1110059J08Rik|1700063H17Rik	COMM domain containing 6	protein-coding	0.035000	0.567164	
mm_170013.1	chr17	17294323	17294523	+	1	NA	NA	NA	-20	NM_001324550	100862203	Mm.484235	NM_001324550		Gm6712	EG626854	predicted gene 6712	protein-coding	0.030000	0.492537	
mm_23180.1	chr3	40800682	40800882	+	1	NA	NA	NA	831	NR_045576	20873	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo-like kinase 4	protein-coding	0.060000	0.636816	
mm_36026.1	chr4	57077140	57077340	-	1	NA	NA	NA	65916	NM_019427	54357	Mm.28217	NM_019427	ENSMUSG00000028434	Epb41l4b	6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2	erythrocyte membrane protein band 4.1 like 4b	protein-coding	0.025000	0.487562	
mm_47885.1	chr5	134703297	134703497	-	1	NA	NA	NA	-14807	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.010000	0.582090	
mm_81299.1	chr9	108339145	108339345	+	1	NA	NA	NA	165	NM_001329528	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.060000	0.597015	
mm_147240.1	chr18	38338860	38339060	-	1	NA	NA	NA	33	NM_011937	26384	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.130000	0.751244	
mm_93030.1	chr10	88135749	88135949	-	1	NA	NA	NA	11092	NM_029249	75317	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	0.055000	0.532338	51(TGCTTTAAAAAA,-,0.00)
mm_108993.1	chr12	102948759	102948959	+	1	NA	NA	NA	0	NM_001081017	217843	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	0.055000	0.661692	
mm_57051.1	chr6	122393367	122393567	-	1	NA	NA	NA	-53240	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.030000	0.512438	
mm_132696.1	chr16	43302300	43302500	+	1	NA	NA	NA	55116	NM_019778	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.010000	0.422886	-89(TTGTATAAAGGG,-,0.00)
mm_137396.1	chr17	25823574	25823774	+	1	NA	NA	NA	47	NM_173741	268933	Mm.95512	NM_173741	ENSMUSG00000025737	Wdr24	BC037651	WD repeat domain 24	protein-coding	0.055000	0.537313	58(GCTTTTCTAGCA,+,0.00)
mm_71517.1	chr8	46846522	46846722	+	1	NA	NA	NA	106877	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.035000	0.482587	
mm_127613.1	chr15	102460018	102460218	+	1	NA	NA	NA	948	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.015000	0.517413	
mm_52468.1	chr6	114131309	114131509	+	1	NA	NA	NA	168	NM_172890	243616	Mm.44683	NM_172890	ENSMUSG00000030307	Slc6a11	D930045G19Rik|E130202I16Rik|GAT4|Gabt4|Gat3	solute carrier family 6 (neurotransmitter transporter, GABA), member 11	protein-coding	0.140000	0.686567	
mm_105965.1	chr11	115473975	115474175	-	1	NA	NA	NA	-1602	NM_177778	276905	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0.025000	0.492537	
mm_139192.1	chr17	47611463	47611663	+	1	NA	NA	NA	-33	NM_020048	56771	Mm.59393	NM_020048	ENSMUSG00000092558	Med20	1110011O05Rik|2410115I17Rik|AU018348|Trfp	mediator complex subunit 20	protein-coding	0.105000	0.616915	
mm_84434.1	chr9	66069622	66069822	-	1	NA	NA	NA	9	NM_001025612	382083	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	0.080000	0.721393	
mm_68166.1	chr7	103812544	103812744	-	1	NA	NA	NA	1279	NM_016956	15130	Mm.288567	NM_016956		Hbb-b2	AI036344|Hbb2|Hbbt2|beta2	hemoglobin, beta adult minor chain	protein-coding	0.005000	0.482587	
mm_42236.1	chr5	113717296	113717496	+	1	NA	NA	NA	7376	NR_033216	381707	Mm.159016	NR_033216	ENSMUSG00000042184	1700069L16Rik	1700096P12Rik	RIKEN cDNA 1700069L16 gene	ncRNA	0.000000	0.542289	
mm_123200.1	chr14	59260116	59260316	-	1	NA	NA	NA	0	NM_001164329	628693	Mm.479519	NM_001164329	ENSMUSG00000090881	Gm6904	EG628693	predicted gene 6904	protein-coding	0.015000	0.512438	
mm_49927.1	chr6	39381257	39381457	+	1	NA	NA	NA	-71	NM_011226	19331	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	0.040000	0.601990	
mm_98630.1	chr11	96080980	96081180	+	1	NA	NA	NA	-5386	NM_007506	11951	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	0.020000	0.432836	
mm_96922.1	chr11	70505223	70505423	+	1	NA	NA	NA	49	NM_029360	75604	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.035000	0.601990	
mm_85197.1	chr9	96732088	96732288	-	1	NA	NA	NA	-513	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.040000	0.507463	-70(CCGCATTTAAGG,-,0.00),-68(GCATTTAAGGTG,+,0.00)
mm_36443.1	chr4	82374030	82374230	-	1	NA	NA	NA	131649	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.015000	0.457711	
mm_88870.1	chr10	81010183	81010383	+	1	NA	NA	NA	4642	NM_010319	14708	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.010000	0.507463	
mm_118588.1	chr14	20640908	20641108	+	1	NA	NA	NA	15532	NM_021508	59011	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0.135000	0.636816	
mm_82934.1	chr9	35199799	35199999	-	1	NA	NA	NA	6	NM_001177847	117149	Mm.23987	NM_054096	ENSMUSG00000032041	Tirap	AA407980|C130027E04Rik|Mal|Tlr4ap|Wyatt	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	protein-coding	0.135000	0.781095	
mm_72068.1	chr8	71488629	71488829	+	1	NA	NA	NA	626	NM_032544	70359	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	0.060000	0.562189	
mm_59729.1	chr7	28795887	28796087	+	1	NA	NA	NA	7018	NM_177158	320435	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0.030000	0.567164	
mm_22535.1	chr3	8554800	8555000	+	1	NA	NA	NA	45373	NM_025285	20257	Mm.29580	NM_025285	ENSMUSG00000027500	Stmn2	AI159727|SCG10|Scgn10|Stmb2	stathmin-like 2	protein-coding	0.030000	0.527363	
mm_93584.1	chr10	116950299	116950499	-	1	NA	NA	NA	-19	NM_001003950	216363	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	0.150000	0.796020	
mm_132284.1	chr16	33056955	33057155	+	1	NA	NA	NA	541	NM_021338	57808	Mm.19355	NM_021338	ENSMUSG00000060636	Rpl35a	2810431L15Rik|Rpl35	ribosomal protein L35A	protein-coding	0.050000	0.567164	-59(GCCTCTATAGGG,-,0.00)
mm_137826.1	chr17	30635426	30635626	+	1	NA	NA	NA	8590	NM_013811	13417	Mm.426017	NM_013811	ENSMUSG00000033826	Dnah8	ATPase|Dnahc8|Hst6.7b|P1-Loop	dynein, axonemal, heavy chain 8	protein-coding	0.035000	0.661692	
mm_81626.1	chr9	110844427	110844627	+	1	NA	NA	NA	21	NM_183103	74306	Mm.87419	NM_183103	ENSMUSG00000049719	Prss46	1700112C13Rik|79H19B|Tessp6	protease, serine 46	protein-coding	0.025000	0.527363	
mm_62225.1	chr7	98491884	98492084	+	1	NA	NA	NA	-2238	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.020000	0.542289	
mm_149294.1	chr19	10688839	10689039	+	1	NA	NA	NA	124	NM_181403	107305	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.140000	0.741294	
mm_119315.1	chr14	36969911	36970111	+	1	NA	NA	NA	-1247	NM_027045	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.010000	0.388060	
mm_112598.1	chr13	14097362	14097562	+	1	NA	NA	NA	33678	NM_198122	94246	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.010000	0.398010	
mm_97665.1	chr11	79660495	79660695	+	1	NA	NA	NA	14491	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	0.120000	0.756219	
mm_128670.1	chr15	60187176	60187376	-	1	NA	NA	NA	-170658	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.000000	0.373134	
mm_136718.1	chr17	7945917	7946117	+	1	NA	NA	NA	403	NM_025789	66832	Mm.29830	NM_025789	ENSMUSG00000073471	Rsph3a	1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a	radial spoke 3A homolog (Chlamydomonas)	protein-coding	0.095000	0.646766	
mm_20301.1	chr2	127140884	127141084	-	1	NA	NA	NA	1606	NM_001163528	73338	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	0.025000	0.562189	
mm_103946.1	chr11	84067664	84067864	-	1	NA	NA	NA	593	NM_019819	56405	Mm.240885	NM_019819	ENSMUSG00000018648	Dusp14	1110014C10Rik|2310042C07Rik|D11Ertd395e|MKP-L|Mkp6	dual specificity phosphatase 14	protein-coding	0.025000	0.452736	
mm_156404.1	chrX	140062816	140063016	+	1	NA	NA	NA	37	NM_177921	331537	Mm.328336	NM_177921	ENSMUSG00000042433	Pih1h3b	E230019M04Rik	PIH1 domain containing 3B	protein-coding	0.040000	0.532338	
mm_17075.1	chr2	22761226	22761426	-	1	NA	NA	NA	-13001	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.020000	0.452736	
mm_18406.1	chr2	60383163	60383363	-	1	NA	NA	NA	-32	NM_013825	17076	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	0.110000	0.736318	
mm_62500.1	chr7	101976777	101976977	+	1	NA	NA	NA	7034	NM_133947	101706	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	0.015000	0.447761	
mm_77135.1	chr8	111393693	111393893	-	1	NA	NA	NA	28	NM_178086	338521	Mm.41083	NM_178086	ENSMUSG00000033579	Fa2h	FAAH|Faxdc1|G630055L08Rik	fatty acid 2-hydroxylase	protein-coding	0.125000	0.746269	
mm_13241.1	chr2	98662587	98662787	+	1	NA	NA	NA	1195030	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.020000	0.313433	
mm_27328.1	chr3	50368592	50368792	-	1	NA	NA	NA	74921	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.457711	-35(TTTTTAAAAGAC,+,0.00)
mm_135713.1	chr16	55787854	55788054	-	1	NA	NA	NA	34184	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.025000	0.447761	
mm_132842.1	chr16	45945513	45945713	+	1	NA	NA	NA	64800	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.015000	0.522388	35(TCCTCTAAAAAG,-,0.00)
mm_42424.1	chr5	115327561	115327761	+	1	NA	NA	NA	484	NR_036616	108014	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0.080000	0.696517	
mm_52634.1	chr6	117174321	117174521	+	1	NA	NA	NA	5886	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.005000	0.422886	
mm_136928.1	chr17	13874430	13874630	+	1	NA	NA	NA	-73843	NM_001122977	635895	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.000000	0.512438	
mm_105283.1	chr11	102435311	102435511	-	1	NA	NA	NA	5089	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.010000	0.517413	
mm_14115.1	chr2	125866194	125866394	+	1	NA	NA	NA	71	NM_001291002	69976	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	0.035000	0.562189	
mm_106721.1	chr12	3860889	3861089	+	1	NA	NA	NA	1255	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.005000	0.492537	
mm_138219.1	chr17	34314992	34315192	+	1	NA	NA	NA	9225	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.010000	0.527363	
mm_77409.1	chr8	120588964	120589164	-	1	NA	NA	NA	11	NM_178856	272551	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.105000	0.641791	-85(GTCTCTATAGGG,-,0.00)
mm_92767.1	chr10	81129356	81129556	-	1	NA	NA	NA	-6815	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.085000	0.706468	
mm_117109.1	chr13	60177084	60177284	-	1	NA	NA	NA	351	NM_008086	14451	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	0.125000	0.741294	
mm_110200.1	chr12	27340641	27340841	-	1	NA	NA	NA	1977	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.025000	0.393035	-32(CCCTTTAGACGG,+,0.00)
mm_85679.1	chr9	107817972	107818172	-	1	NA	NA	NA	-47070	NM_148930	83486	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	0.005000	0.512438	7(ACCCATAAGAGG,-,0.00)
mm_93228.1	chr10	95319905	95320105	-	1	NA	NA	NA	3704	NM_001330138	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.030000	0.512438	86(TTCTTTATAAGG,-,0.00),88(CTTTATAAGGAA,+,0.00)
mm_159209.1	chr2	121787242	121787442	-	1	NA	NA	NA	19715	NM_172673	228564	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|5830442F04|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	0.015000	0.467662	
mm_36352.1	chr4	73950744	73950944	-	1	NA	NA	NA	2	NM_027981	71886	Mm.158769	NM_027104	ENSMUSG00000028396	2310002L09Rik	2310003M01Rik|AV083437	RIKEN cDNA 2310002L09 gene	protein-coding	0.005000	0.417910	
mm_13293.1	chr2	101991874	101992074	+	1	NA	NA	NA	105712	NM_029635	76501	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0.000000	0.477612	
mm_91422.1	chr10	32889601	32889801	-	1	NA	NA	NA	214	NM_001013411	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding	0.040000	0.547264	
mm_82558.1	chr9	21028206	21028406	-	1	NA	NA	NA	-1067	NM_023892	78369	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.005000	0.432836	
mm_26589.1	chr3	151383571	151383771	+	1	NA	NA	NA	-54211	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.000000	0.447761	-34(CCACTTAAAAGG,-,0.00)
mm_171175.1	chr3	34035950	34036150	+	1	NA	NA	NA	15971	NM_001113188	14359	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0.020000	0.507463	
mm_70569.1	chr8	13159112	13159312	+	1	NA	NA	NA	51	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.135000	0.716418	
mm_16150.1	chr2	172345485	172345685	+	1	NA	NA	NA	8	NM_025912	67017	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	0.110000	0.726368	
mm_112077.1	chr12	112654640	112654840	-	1	NA	NA	NA	4611	NR_105904	102465566		NR_105904	ENSMUSG00000098380	Mir6939	Gm27498|mmu-mir-6939	microRNA 6939	ncRNA	0.030000	0.636816	
mm_74987.1	chr8	27154634	27154834	-	1	NA	NA	NA	11824	NR_045840	71082	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.040000	0.567164	
mm_67728.1	chr7	90129750	90129950	-	1	NA	NA	NA	86	NR_046007	78329	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	0.090000	0.661692	
mm_138994.1	chr17	45555604	45555804	+	1	NA	NA	NA	4	NM_001304956	18037	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	0.085000	0.701493	
mm_3664.1	chr1	153425100	153425300	+	1	NA	NA	NA	-9	NM_001033162	71836	Mm.49460	NM_001033162	ENSMUSG00000042708	Shcbp1l	1700012A16Rik	Shc SH2-domain binding protein 1-like	protein-coding	0.115000	0.701493	
mm_136071.1	chr16	84745810	84746010	-	1	NA	NA	NA	-10608	NM_017404	27393	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	0.015000	0.497512	
mm_52218.1	chr6	103510786	103510986	+	1	NA	NA	NA	10	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.050000	0.621891	
mm_26444.1	chr3	142635227	142635427	+	1	NA	NA	NA	-11381	NR_105802	102465200		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.010000	0.447761	
mm_172944.1	chr9	81677588	81677788	+	1	NA	NA	NA	-45136	NM_010482	15551	Mm.445308	NM_010482	ENSMUSG00000049511	Htr1b	-	5-hydroxytryptamine (serotonin) receptor 1B	protein-coding	0.055000	0.547264	
mm_7464.1	chr1	120477313	120477513	-	1	NA	NA	NA	27671	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.010000	0.437811	78(TCTTTTAGAGTC,+,0.00)
mm_74139.1	chr8	123234968	123235168	+	1	NA	NA	NA	-23	NR_045849	71186	Mm.449984	NR_045849	ENSMUSG00000097637	4933417D19Rik	-	RIKEN cDNA 4933417D19 gene	ncRNA	0.040000	0.592040	
mm_162737.1	chr10	56387588	56387788	+	1	NA	NA	NA	10388	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.040000	0.547264	
mm_32581.1	chr4	110589316	110589516	+	1	NA	NA	NA	191718	NM_030231	78933	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	0.015000	0.318408	
mm_75545.1	chr8	57487736	57487936	-	1	NA	NA	NA	24	NM_021788	60406	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	0.060000	0.631841	
mm_111296.1	chr12	85477169	85477369	-	1	NA	NA	NA	3368	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.010000	0.402985	
mm_87983.1	chr10	63906813	63907013	+	1	NA	NA	NA	85858	NM_001164519	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.000000	0.368159	
mm_42397.1	chr5	114937819	114938019	+	1	NA	NA	NA	-4283	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.010000	0.447761	
mm_119319.1	chr14	37054736	37054936	+	1	NA	NA	NA	6	NM_146245	239037	Mm.37907	NM_146245	ENSMUSG00000041044	Lrit1	BC032270|Lrrc21	leucine-rich repeat, immunoglobulin-like and transmembrane domains 1	protein-coding	0.005000	0.601990	
mm_154251.1	chr19	60766614	60766814	-	1	NA	NA	NA	7671	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.045000	0.542289	
mm_95249.1	chr11	44618116	44618316	+	1	NA	NA	NA	116	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.060000	0.522388	
mm_122220.1	chr14	32388276	32388476	-	1	NA	NA	NA	-3	NM_001034037	67085	Mm.109099	NM_001034037	ENSMUSG00000072473	1700024G13Rik	C10orf53	RIKEN cDNA 1700024G13 gene	protein-coding	0.045000	0.641791	
mm_49065.1	chr6	5390610	5390810	+	1	NA	NA	NA	7324	NM_023048	65255	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0.015000	0.402985	-33(GGCTCTAAAAAC,-,0.00)
mm_12938.1	chr2	85136263	85136463	+	1	NA	NA	NA	3	NM_011784	23796	Mm.29368	NM_011784	ENSMUSG00000044338	Aplnr	APJ|Agtrl1|msr/apj	apelin receptor	protein-coding	0.010000	0.537313	
mm_118188.1	chr13	107565245	107565445	-	1	NA	NA	NA	95523	NR_045084	105120	Mm.417700	NR_045083		AI197445	-	expressed sequence AI197445	ncRNA	0.010000	0.402985	
mm_148668.1	chr19	5637395	5637595	+	1	NA	NA	NA	5	NM_009045	19697	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.125000	0.696517	-47(TCCCCTAAAAAC,-,0.00)
mm_63973.1	chr7	139950340	139950540	+	1	NA	NA	NA	6584	NM_009482	22286	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	0.045000	0.577114	
mm_22184.1	chr2	173218766	173218966	-	1	NA	NA	NA	56	NM_021394	58203	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.010000	0.582090	
mm_167609.1	chr9	54949254	54949454	+	1	NA	NA	NA	-1505	NM_011966	26441	Mm.30270	NM_011966	ENSMUSG00000032301	Psma4	C9	proteasome (prosome, macropain) subunit, alpha type 4	protein-coding	0.015000	0.383085	
mm_52083.1	chr6	97829182	97829382	+	1	NA	NA	NA	22224	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.383085	
mm_147820.1	chr18	61826917	61827117	-	1	NA	NA	NA	-40355	NM_178928	106877	Mm.26632	NM_178928	ENSMUSG00000033032	Afap1l1	AI173486	actin filament associated protein 1-like 1	protein-coding	0.005000	0.477612	
mm_76819.1	chr8	104534538	104534738	-	1	NA	NA	NA	-1	NM_144931	234664	Mm.237670	NM_144931	ENSMUSG00000031878	Nae1	59kDa|Appbp1	NEDD8 activating enzyme E1 subunit 1	protein-coding	0.100000	0.681592	
mm_132612.1	chr16	38661613	38661813	+	1	NA	NA	NA	51322	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.035000	0.497512	-32(GCTTTAAGAGAC,+,0.00)
mm_15049.1	chr2	152869357	152869557	+	1	NA	NA	NA	4390	NR_049195	100885834		NR_049195	ENSMUSG00000093746	Mir5622	Gm24421|mmu-mir-5622	microRNA 5622	ncRNA	0.005000	0.467662	-73(GTATTTAAATGG,-,0.00),-54(GGCCAGATAAGG,-,0.00)
mm_32463.1	chr4	107434537	107434737	+	1	NA	NA	NA	-82	NM_147221	230587	Mm.331757	NM_147221	ENSMUSG00000034762	Glis1	Gli5|Gli6|GliH1	GLIS family zinc finger 1	protein-coding	0.180000	0.840796	
mm_34008.1	chr4	137964407	137964607	+	1	NA	NA	NA	-28949	NM_001256198	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.025000	0.572139	
mm_54645.1	chr6	38875830	38876030	-	1	NA	NA	NA	260	NM_010433	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.155000	0.766169	
mm_132790.1	chr16	45038353	45038553	+	1	NA	NA	NA	-55600	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.005000	0.472637	
mm_112063.1	chr12	111966886	111967086	-	1	NA	NA	NA	-9	NM_027360	70257	Mm.318	NM_027360	ENSMUSG00000021290	2010107E04Rik	9430003J03Rik|AU043134|AV124504|Mp68	RIKEN cDNA 2010107E04 gene	protein-coding	0.080000	0.646766	
mm_91159.1	chr10	20553430	20553630	-	1	NA	NA	NA	-5202	NM_001347366	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.020000	0.393035	
mm_105447.1	chr11	104442218	104442418	-	1	NA	NA	NA	-27	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.135000	0.746269	
mm_71469.1	chr8	46534646	46534846	+	1	NA	NA	NA	-17323	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.010000	0.417910	-13(ACCCATAAAAGT,-,0.00)
mm_58662.1	chr7	6730602	6730802	+	1	NA	NA	NA	119	NM_001290994	57775	Mm.40752	NM_021323	ENSMUSG00000051527	Usp29	Ocat	ubiquitin specific peptidase 29	protein-coding	0.015000	0.462687	
mm_121236.1	chr14	103056031	103056231	+	1	NA	NA	NA	9119	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.407960	
mm_157746.1	chrX	73401617	73401817	-	1	NA	NA	NA	-9379	NM_009566	22754	Mm.5060	NM_009566	ENSMUSG00000031374	Zfp92	-	zinc finger protein 92	protein-coding	0.040000	0.537313	
mm_132074.1	chr16	30066323	30066523	+	1	NA	NA	NA	1066	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hairy and enhancer of split 1 (Drosophila)	protein-coding	0.050000	0.562189	-29(TTATTTATAGCC,+,0.00)
mm_158965.1	chr1	92978664	92978864	+	1	NA	NA	NA	-139	NM_022320	64095	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0.020000	0.562189	
mm_99389.1	chr11	102097416	102097616	+	1	NA	NA	NA	3784	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.055000	0.532338	
mm_119440.1	chr14	46760442	46760642	+	1	NA	NA	NA	1	NM_028222	72391	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	0.100000	0.636816	
mm_87467.1	chr10	51491046	51491246	+	1	NA	NA	NA	248	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.005000	0.462687	
mm_11487.1	chr2	32423662	32423862	+	1	NA	NA	NA	304	NM_001290558	227731	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.005000	0.487562	
mm_167017.1	chr7	63896408	63896608	+	1	NA	NA	NA	-20349	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.020000	0.587065	
mm_145525.1	chr18	60566360	60566560	+	1	NA	NA	NA	5674	NM_025776	66810	Mm.275106	NM_025776	ENSMUSG00000024604	Rbm22	8430430L24Rik	RNA binding motif protein 22	protein-coding	0.015000	0.507463	
mm_81307.1	chr9	108347840	108348040	+	1	NA	NA	NA	109	NM_011678	22258	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0.130000	0.736318	
mm_139003.1	chr17	45568269	45568469	+	1	NA	NA	NA	4217	NM_028662	73836	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.020000	0.537313	
mm_29744.1	chr3	126936571	126936771	-	1	NA	NA	NA	6715	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.020000	0.512438	
mm_115220.1	chr13	109685376	109685576	+	1	NA	NA	NA	-218333	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.025000	0.447761	
mm_45407.1	chr5	66299310	66299510	-	1	NA	NA	NA	38255	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.010000	0.407960	8(TTCCATTAAAGC,-,0.00)
mm_109120.1	chr12	105685307	105685507	+	1	NA	NA	NA	55	NM_178613	66787	Mm.248019	NM_178613	ENSMUSG00000044715	Gskip	4933433P14Rik	GSK3B interacting protein	protein-coding	0.090000	0.686567	
mm_73757.1	chr8	115110087	115110287	+	1	NA	NA	NA	596707	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.000000	0.447761	
mm_17380.1	chr2	27019954	27020154	-	1	NA	NA	NA	7944	NM_172659	227659	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.005000	0.557214	
mm_65013.1	chr7	17090498	17090698	-	1	NA	NA	NA	16558	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.025000	0.467662	
mm_134626.1	chr16	21650059	21650259	-	1	NA	NA	NA	44506	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.000000	0.343284	
mm_20661.1	chr2	132114504	132114704	-	1	NA	NA	NA	30504	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.015000	0.477612	-26(TCTTTTAAACAC,+,0.00)
mm_12711.1	chr2	76687990	76688190	+	1	NA	NA	NA	12775	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.005000	0.492537	
mm_75421.1	chr8	46773521	46773721	-	1	NA	NA	NA	33876	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.010000	0.427861	
mm_143586.1	chr17	74436119	74436319	-	1	NA	NA	NA	22889	NM_001033367	268973	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.005000	0.417910	
mm_108504.1	chr12	83950570	83950770	+	1	NA	NA	NA	62	NM_023633	71952	Mm.251483	NM_023633	ENSMUSG00000046791	2410016O06Rik	MAPJD|NO66	RIKEN cDNA 2410016O06 gene	protein-coding	0.120000	0.716418	
mm_21225.1	chr2	155929952	155930152	-	1	NA	NA	NA	258	NM_018888	56046	Mm.158827	NM_018888	ENSMUSG00000005882	Uqcc1	2310079L17Rik|2410003P15Rik|3110038N19Rik|Bfzb|Bfzp|Cbp3|Uqcc	ubiquinol-cytochrome c reductase complex assembly factor 1	protein-coding	0.065000	0.597015	
mm_171981.1	chr5	89690225	89690425	-	1	NA	NA	NA	73889	NR_037571	631105	Mm.7732	NR_037571		Gm7056	Gm149	predicted gene 7056	ncRNA	0.000000	0.398010	
mm_97397.1	chr11	77837961	77838161	+	1	NA	NA	NA	36763	NM_001291215	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.015000	0.577114	
mm_65348.1	chr7	24994156	24994356	-	1	NA	NA	NA	-6589	NR_106014	102465634		NR_106014	ENSMUSG00000099258	Mir7047	Gm27270|mmu-mir-7047	microRNA 7047	ncRNA	0.045000	0.601990	
mm_99707.1	chr11	106216425	106216625	+	1	NA	NA	NA	-158	NM_026009	67163	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	0.065000	0.557214	
mm_121131.1	chr14	101869287	101869487	+	1	NA	NA	NA	28764	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.015000	0.587065	
mm_10511.1	chr2	16356240	16356440	+	1	NA	NA	NA	36	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.080000	0.661692	
mm_128149.1	chr15	31735306	31735506	-	1	NA	NA	NA	133290	NM_026546	68073	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.000000	0.497512	
mm_122694.1	chr14	52077933	52078133	-	1	NA	NA	NA	8718	NR_028552	100217457		NR_028552	ENSMUSG00000064871	Snord58b	MBII-199	small nucleolar RNA, C/D box 58B	snoRNA	0.000000	0.343284	
mm_67617.1	chr7	83937693	83937893	-	1	NA	NA	NA	45793	NM_023403	67943	Mm.117365	NM_023403	ENSMUSG00000038503	Mesdc2	2210015O11Rik|AW537813|mKIAA0081|mesd|msd	mesoderm development candidate 2	protein-coding	0.010000	0.517413	
mm_146693.1	chr18	12879888	12880088	-	1	NA	NA	NA	-9	NM_001252489	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.075000	0.676617	
mm_140906.1	chr17	24163524	24163724	-	1	NA	NA	NA	109	NM_172935	245847	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	0.095000	0.676617	
mm_148691.1	chr19	5740795	5740995	+	1	NA	NA	NA	-9	NM_008520	16998	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0.010000	0.537313	
mm_21101.1	chr2	153241249	153241449	-	1	NA	NA	NA	9	NM_018807	54711	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	0.150000	0.791045	
mm_60391.1	chr7	44474586	44474786	+	1	NA	NA	NA	4339	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.626866	
mm_82930.1	chr9	35175945	35176145	-	1	NA	NA	NA	-58	NM_027030	69305	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	0.080000	0.611940	
mm_151846.1	chr19	5771186	5771386	-	1	NA	NA	NA	115	NM_023912	78891	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0.130000	0.736318	
mm_54179.1	chr6	23839155	23839355	-	1	NA	NA	NA	166	NM_001252106	320405	Mm.259632	NM_153163	ENSMUSG00000017978	Cadps2	A230044C21Rik|Caps-2|Caps2|Cpd2	Ca2+-dependent activator protein for secretion 2	protein-coding	0.160000	0.746269	
mm_123498.1	chr14	66213465	66213665	-	1	NA	NA	NA	-13	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.020000	0.562189	
mm_50485.1	chr6	48988447	48988647	+	1	NA	NA	NA	1686	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.015000	0.522388	
mm_163257.1	chr11	109674768	109674968	+	1	NA	NA	NA	23947	NM_001313976	19084	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.010000	0.542289	
mm_65574.1	chr7	27195606	27195806	-	1	NA	NA	NA	54	NM_001046637	53607	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0.055000	0.567164	
mm_687.1	chr1	40534430	40534630	+	1	NA	NA	NA	19168	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.000000	0.472637	
mm_125142.1	chr15	30632884	30633084	+	1	NA	NA	NA	-406142	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.000000	0.268657	
mm_49748.1	chr6	34746122	34746322	+	1	NA	NA	NA	-34210	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.030000	0.527363	
mm_79399.1	chr9	54950714	54950914	+	1	NA	NA	NA	-45	NM_011966	26441	Mm.30270	NM_011966	ENSMUSG00000032301	Psma4	C9	proteasome (prosome, macropain) subunit, alpha type 4	protein-coding	0.090000	0.671642	
mm_59521.1	chr7	27605754	27605954	+	1	NA	NA	NA	57	NM_007434	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.015000	0.582090	
mm_163978.1	chr14	55884937	55885137	+	1	NA	NA	NA	95	NR_138134	219094	Mm.37592	NM_027143	ENSMUSG00000047153	Khnyn	6330555F21|9130227C08Rik|AI605259|Kiaa0323|mKIAA0323	KH and NYN domain containing	protein-coding	0.100000	0.691542	
mm_58529.1	chr7	4151301	4151501	+	1	NA	NA	NA	-1529	NM_175529	243813	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.060000	0.621891	
mm_168201.1	chr10	69325129	69325329	+	1	NA	NA	NA	27683	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.030000	0.502488	
mm_136694.1	chr17	7138345	7138545	+	1	NA	NA	NA	-31670	NM_011299	20112	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.025000	0.487562	
mm_138495.1	chr17	35200623	35200823	+	1	NA	NA	NA	1284	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.025000	0.577114	32(GTCTCTAAGAGC,-,0.00)
mm_78786.1	chr9	44032092	44032292	+	1	NA	NA	NA	-11192	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.015000	0.467662	
mm_151269.1	chr19	55180625	55180825	+	1	NA	NA	NA	-160	NM_009348	21684	Mm.42139	NM_009348	ENSMUSG00000024979	Tectb	Tctnb	tectorin beta	protein-coding	0.015000	0.497512	-35(AGATATATAAGG,-,0.00)
mm_116664.1	chr13	49200628	49200828	-	1	NA	NA	NA	13181	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.045000	0.522388	
mm_162925.1	chr10	121310723	121310923	+	1	NA	NA	NA	366	NM_029057	74694	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik	TBC1 domain family, member 30	protein-coding	0.145000	0.741294	
mm_129330.1	chr15	77775835	77776035	-	1	NA	NA	NA	-20706	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.015000	0.547264	
mm_91351.1	chr10	27616720	27616920	-	1	NA	NA	NA	122	NM_008481	16773	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding	0.055000	0.666667	
mm_50548.1	chr6	49046648	49046848	+	1	NA	NA	NA	10230	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.015000	0.507463	
mm_57835.1	chr6	129465089	129465289	-	1	NA	NA	NA	7590	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.010000	0.442786	49(TCTTTTATAGCT,+,0.00)
mm_124586.1	chr15	3270889	3271089	+	1	NA	NA	NA	12	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.035000	0.512438	-25(GGCTATAAAAGT,-,0.00)
mm_145027.1	chr18	39072441	39072641	+	1	NA	NA	NA	79396	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.015000	0.472637	
mm_16920.1	chr2	13574898	13575098	-	1	NA	NA	NA	687	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.065000	0.671642	
mm_111324.1	chr12	86469899	86470099	-	1	NA	NA	NA	48355	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.040000	0.517413	
mm_135315.1	chr16	38713259	38713459	-	1	NA	NA	NA	-324	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.090000	0.651741	
mm_166163.1	chr5	18156026	18156226	+	1	NA	NA	NA	193556	NM_001081143	242851	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.005000	0.363184	
mm_120282.1	chr14	63132443	63132643	+	1	NA	NA	NA	10081	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.502488	
mm_55.1	chr1	6528193	6528393	+	1	NA	NA	NA	41062	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.333333	
mm_157580.1	chrX	52772669	52772869	-	1	NA	NA	NA	-18431	NM_001034059	434778	Mm.23411	NM_001034059	ENSMUSG00000073207	Ccdc160	6330534C20Rik	coiled-coil domain containing 160	protein-coding	0.055000	0.482587	
mm_85483.1	chr9	106080218	106080418	-	1	NA	NA	NA	16373	NM_026763	68553	Mm.28854	NM_026763	ENSMUSG00000032572	Col6a4	1110001D15Rik|AI413310|AU023415|Dvwa|EG235580|Vwa6	collagen, type VI, alpha 4	protein-coding	0.040000	0.567164	
mm_95009.1	chr11	31931693	31931893	+	1	NA	NA	NA	-33840	NM_026262	67592	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	0.005000	0.358209	
mm_150376.1	chr19	35974949	35975149	+	1	NA	NA	NA	82311	NM_001347442	15566	Mm.254266	NM_008315	ENSMUSG00000024798	Htr7	5-HT7	5-hydroxytryptamine (serotonin) receptor 7	protein-coding	0.005000	0.388060	
mm_59977.1	chr7	30459658	30459858	+	1	NA	NA	NA	-300	NM_019459	54631	Mm.437830	NM_019459	ENSMUSG00000006649	Nphs1	NephrinB|nephrin	nephrosis 1, nephrin	protein-coding	0.015000	0.552239	
mm_104560.1	chr11	96829371	96829571	-	1	NA	NA	NA	31	NM_001130450	18023	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	0.085000	0.671642	-55(TCGCTTTTAAGG,-,0.00),-54(CGCTTTTAAGGG,-,0.00),-53(GCTTTTAAGGGT,+,0.00)
mm_134104.1	chr16	9995260	9995460	-	1	NA	NA	NA	-2827	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.075000	0.636816	
mm_35759.1	chr4	45826758	45826958	-	1	NA	NA	NA	-31	NM_018741	75426	Mm.3919	NM_018741	ENSMUSG00000035551	Igfbpl1	2810011G06Rik|2810453O06Rik|IGFBPL	insulin-like growth factor binding protein-like 1	protein-coding	0.130000	0.756219	
mm_64513.1	chr7	143823022	143823222	+	1	NA	NA	NA	-45	NM_007856	13360	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	0.045000	0.527363	-72(CCCTTTAAAGTA,+,0.00)
mm_152597.1	chr19	11640706	11640906	-	1	NA	NA	NA	45	NM_133246	170813	Mm.240438	NM_133246	ENSMUSG00000024681	Ms4a3	HTm4	membrane-spanning 4-domains, subfamily A, member 3	protein-coding	0.005000	0.492537	
mm_5182.1	chr1	12992558	12992758	-	1	NA	NA	NA	-1523	NM_172841	240726	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0.075000	0.661692	
mm_1290.1	chr1	64301692	64301892	+	1	NA	NA	NA	-180403	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.010000	0.497512	-39(CTCTTTTAAAGG,-,0.00),-38(TCTTTTAAAGGG,+,0.00)
mm_160545.1	chr9	44407605	44407805	+	1	NA	NA	NA	-9	NM_024266	75617	Mm.292027	NM_024266	ENSMUSG00000009927	Rps25	2810009D21Rik	ribosomal protein S25	protein-coding	0.065000	0.592040	
mm_17731.1	chr2	32493327	32493527	-	1	NA	NA	NA	-41932	NM_153560	98952	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.020000	0.527363	
mm_91106.1	chr10	19122140	19122340	-	1	NA	NA	NA	-19509	NR_038021	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.030000	0.492537	
mm_913.1	chr1	55026263	55026463	+	1	NA	NA	NA	1115	NM_031179	81898	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	0.020000	0.388060	
mm_95612.1	chr11	53478755	53478955	+	1	NA	NA	NA	1340	NM_183173	237761	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	0.130000	0.691542	
mm_86371.1	chr9	123797885	123798085	-	1	NA	NA	NA	-8492	NM_030712	80901	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.010000	0.522388	
mm_43731.1	chr5	139736700	139736900	+	1	NA	NA	NA	-467	NM_174850	231830	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.010000	0.502488	
mm_3638.1	chr1	152811521	152811721	+	1	NA	NA	NA	11468	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.010000	0.383085	
mm_160532.1	chr9	38975777	38975977	+	1	NA	NA	NA	199	NM_146441	258433	Mm.271361	NM_146441	ENSMUSG00000058515	Olfr933	MOR171-22	olfactory receptor 933	protein-coding	0.000000	0.462687	
mm_79028.1	chr9	46012716	46012916	+	1	NA	NA	NA	-4	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.140000	0.796020	
mm_32659.1	chr4	115090063	115090263	+	1	NA	NA	NA	1455	NM_001164557	67182	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	0.005000	0.502488	
mm_94716.1	chr11	20543057	20543257	+	1	NA	NA	NA	-96	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.095000	0.691542	62(GACTCTTTAAAG,-,0.00),64(CTCTTTAAAGTC,+,0.00)
mm_97797.1	chr11	82951280	82951480	+	1	NA	NA	NA	-722	NM_183201	327978	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	0.025000	0.582090	
mm_29742.1	chr3	126922863	126923063	-	1	NA	NA	NA	20423	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.015000	0.437811	
mm_5825.1	chr1	52799402	52799602	-	1	NA	NA	NA	18186	NM_008384	16329	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	0.020000	0.542289	
mm_122392.1	chr14	40966761	40966961	-	1	NA	NA	NA	35	NM_145928	52588	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.160000	0.741294	
mm_141553.1	chr17	32189367	32189567	-	1	NA	NA	NA	-4	NM_001033163	71932	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9	epoxide hydrolase 3	protein-coding	0.060000	0.587065	
mm_127806.1	chr15	4988259	4988459	-	1	NA	NA	NA	75414	NM_001243837	109828	Mm.208034	NM_001243837	ENSMUSG00000079105	C7	A530026G17|Gm1238	complement component 7	protein-coding	0.020000	0.447761	
mm_89722.1	chr10	98915045	98915245	+	1	NA	NA	NA	-7	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.155000	0.805970	
mm_16913.1	chr2	13493582	13493782	-	1	NA	NA	NA	-1806	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.005000	0.482587	
mm_75724.1	chr8	69089108	69089308	-	1	NA	NA	NA	14	NM_153054	110877	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	0.040000	0.577114	
mm_63087.1	chr7	122295653	122295853	+	1	NA	NA	NA	6628	NM_008855	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.005000	0.417910	
mm_66767.1	chr7	46729066	46729266	-	1	NA	NA	NA	3437	NM_011316	20211	Mm.3489	NM_011316	ENSMUSG00000040017	Saa4	Saa-4|Saa-5	serum amyloid A 4	protein-coding	0.005000	0.547264	
mm_142154.1	chr17	36032469	36032669	-	1	NA	NA	NA	132	NM_010398	15040	Mm.439648	NM_010398	ENSMUSG00000067212	H2-T23	37b|37c|H-2T23|H2-Qa1|Qa-1|Qa-1(b)|Qa1|Qed-1|T18c|T18c(37)|T23b|T23d	histocompatibility 2, T region locus 23	protein-coding	0.040000	0.616915	
mm_169872.1	chr16	36072015	36072215	+	1	NA	NA	NA	455	NM_001159421	381045	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	0.075000	0.606965	
mm_15654.1	chr2	163203076	163203276	+	1	NA	NA	NA	-22278	NM_001098799	269389	Mm.207709	NM_001098799	ENSMUSG00000074607	Tox2	AI851523|AV026525|BI987407|Gcx1|RxHMG1	TOX high mobility group box family member 2	protein-coding	0.150000	0.776119	
mm_170481.1	chr19	12502991	12503191	+	1	NA	NA	NA	-1095	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.025000	0.492537	
mm_129580.1	chr15	79741208	79741408	-	1	NA	NA	NA	1228	NM_194342	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.005000	0.522388	-84(TACCTTATAAGG,-,0.00),-82(CCTTATAAGGAC,+,0.00)
mm_78256.1	chr9	21835397	21835597	+	1	NA	NA	NA	-13	NM_001080940	624219	Mm.440264	NM_001080940	ENSMUSG00000047822	Angptl8	EG624219|Gm6484|Rifl	angiopoietin-like 8	protein-coding	0.040000	0.621891	
mm_87268.1	chr10	41685839	41686039	+	1	NA	NA	NA	-79344	NM_001303469	75973	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0.000000	0.358209	
mm_170396.1	chr1	86358104	86358304	-	1	NA	NA	NA	1251	NM_010880	17975	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	0.015000	0.462687	
mm_125540.1	chr15	58141307	58141507	+	1	NA	NA	NA	41	NM_001326599	76773	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	0.080000	0.671642	
mm_44734.1	chr5	31138781	31138981	-	1	NA	NA	NA	14	NM_021290	22226	Mm.377116	NM_021290	ENSMUSG00000038676	Ucn	Mpv17|Ucn1	urocortin	protein-coding	0.060000	0.592040	-34(TGCTATATAAGG,-,0.00)
mm_58575.1	chr7	4876979	4877179	+	1	NA	NA	NA	26	NM_001101598	664994	Mm.302624	NM_001101598	ENSMUSG00000086784	Isoc2a	Isoc2	isochorismatase domain containing 2a	protein-coding	0.065000	0.641791	
mm_115059.1	chr13	100676045	100676245	+	1	NA	NA	NA	6664	NM_001168386	76041	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	0.030000	0.562189	
mm_128622.1	chr15	58956483	58956683	-	1	NA	NA	NA	22773	NM_023172	66218	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.050000	0.552239	
mm_11430.1	chr2	31961967	31962167	+	1	NA	NA	NA	11764	NM_145144	108897	Mm.24838	NM_145144	ENSMUSG00000001864	Aif1l	2810003C17Rik|AI043124|C87647|Iba2	allograft inflammatory factor 1-like	protein-coding	0.005000	0.552239	
mm_1180.1	chr1	61638903	61639103	+	1	NA	NA	NA	179	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0.145000	0.805970	
mm_33617.1	chr4	132624227	132624427	+	1	NA	NA	NA	-14719	NM_210071	14050	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0.005000	0.497512	
mm_7877.1	chr1	133019298	133019498	-	1	NA	NA	NA	6018	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	0.000000	0.378109	
mm_138029.1	chr17	33919374	33919574	+	1	NA	NA	NA	-4	NM_001025313	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.065000	0.641791	-86(TGGTTTTAAGGG,-,0.00)
mm_25796.1	chr3	127632704	127632904	+	1	NA	NA	NA	-341	NM_009718	11924	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	0.085000	0.597015	
mm_101614.1	chr11	35834401	35834601	-	1	NA	NA	NA	27	NM_025936	104458	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.085000	0.626866	
mm_144068.1	chr17	90992463	90992663	-	1	NA	NA	NA	97042	NM_001346957	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.005000	0.288557	
mm_106441.1	chr11	119834254	119834454	-	1	NA	NA	NA	11	NR_045313	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	0.020000	0.567164	
mm_117346.1	chr13	69611256	69611456	-	1	NA	NA	NA	107	NM_175283	78925	Mm.451912	NM_175283	ENSMUSG00000021594	Srd5a1	0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1	steroid 5 alpha-reductase 1	protein-coding	0.055000	0.641791	51(GCTTATATGTGG,+,0.00)
mm_123619.1	chr14	68120853	68121053	-	1	NA	NA	NA	-2799	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.005000	0.517413	
mm_30058.1	chr3	137336029	137336229	-	1	NA	NA	NA	-4949	NM_001163522	59308	Mm.27343	NM_016885	ENSMUSG00000054690	Emcn	0610012K22Rik|AI315669|Muc14	endomucin	protein-coding	0.020000	0.432836	
mm_25916.1	chr3	131156193	131156393	+	1	NA	NA	NA	43502	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.020000	0.437811	
mm_119086.1	chr14	30890065	30890265	+	1	NA	NA	NA	3689	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.010000	0.522388	
mm_58347.1	chr6	147263837	147264037	-	1	NA	NA	NA	76	NM_008970	19227	Mm.28440	NM_008970	ENSMUSG00000048776	Pthlh	PLP|PTH-like|Pthrp	parathyroid hormone-like peptide	protein-coding	0.095000	0.641791	
mm_69250.1	chr7	127841377	127841577	-	1	NA	NA	NA	-331	NM_009294	20909	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.100000	0.671642	
mm_86721.1	chr10	19044083	19044283	+	1	NA	NA	NA	-28773	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.005000	0.412935	
mm_170411.1	chr18	66200327	66200527	+	1	NA	NA	NA	18906	NR_030467	751558		NR_030467	ENSMUSG00000076147	Mir694	Mirn694|mir-694|mmu-mir-694	microRNA 694	ncRNA	0.005000	0.592040	
mm_133366.1	chr16	84705546	84705746	+	1	NA	NA	NA	-7377	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.000000	0.402985	
mm_115608.1	chr13	11991776	11991976	-	1	NA	NA	NA	115069	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.010000	0.492537	
mm_96951.1	chr11	70562906	70563106	+	1	NA	NA	NA	125	NM_016713	50932	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	0.130000	0.786070	
mm_67845.1	chr7	98562893	98563093	-	1	NA	NA	NA	68771	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.005000	0.537313	
mm_171903.1	chr5	43204884	43205084	+	1	NA	NA	NA	-28479	NM_175937	231207	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.015000	0.472637	
mm_66874.1	chr7	57509318	57509518	-	1	NA	NA	NA	591	NM_176942	110886	Mm.273114	NM_176942	ENSMUSG00000055078	Gabra5	A230018I05Rik	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5	protein-coding	0.135000	0.761194	
mm_161083.1	chr12	84642431	84642631	+	1	NA	NA	NA	-24	NM_001168588	432677	Mm.311913	NM_001033776	ENSMUSG00000071235	Vrtn	7420416P09Rik	vertebrae development associated	protein-coding	0.030000	0.547264	
mm_38517.1	chr4	141415909	141416109	-	1	NA	NA	NA	-21	NM_019701	56365	Mm.24882	NM_019701	ENSMUSG00000006216	Clcnkb	CLCKB|Clc-Ka|Clck2|Clcnk1l	chloride channel, voltage-sensitive Kb	protein-coding	0.005000	0.592040	
mm_140265.1	chr17	84682987	84683187	+	1	NA	NA	NA	-34	NM_001347418	67470	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP-binding cassette, sub-family G (WHITE), member 8	protein-coding	0.020000	0.507463	
mm_95973.1	chr11	58954624	58954824	+	1	NA	NA	NA	39	NM_178218	319162	Mm.212549	NM_178218	ENSMUSG00000078851	Hist3h2a	-	histone cluster 3, H2a	protein-coding	0.060000	0.512438	
mm_19791.1	chr2	109167431	109167631	-	1	NA	NA	NA	110759	NM_029790	76894	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.010000	0.318408	
mm_83381.1	chr9	44567669	44567869	-	1	NA	NA	NA	-37123	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.020000	0.482587	
mm_109346.1	chr12	109602953	109603153	+	1	NA	NA	NA	-892	NR_028261	75745	Mm.293263	NR_028261		Rian	5530401N18Rik|C130089L09Rik|Meg8	RNA imprinted and accumulated in nucleus	ncRNA	0.000000	0.502488	-97(GCTTATATGGTG,+,0.00)
mm_100106.1	chr11	115776157	115776357	+	1	NA	NA	NA	10824	NM_028014	71947	Mm.23168	NM_028014	ENSMUSG00000020747	Tmem94	2310067B10Rik|Kiaa0195|mKIAA0195	transmembrane protein 94	protein-coding	0.015000	0.537313	77(TCTTTTATGGGT,+,0.00)
mm_134343.1	chr16	16560112	16560312	-	1	NA	NA	NA	7	NM_139232	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.020000	0.522388	
mm_143218.1	chr17	62882910	62883110	-	1	NA	NA	NA	-1693	NM_010109	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.080000	0.726368	
mm_159300.1	chr2	176708234	176708434	+	1	NA	NA	NA	-19	NM_001099327	100043387	Mm.444048	NM_001099327	ENSMUSG00000078878	Gm14305	OTTMUSG00000016251	predicted gene 14305	protein-coding	0.020000	0.497512	
mm_3645.1	chr1	152903709	152903909	+	1	NA	NA	NA	-1163	NM_001005507	226517	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.085000	0.611940	
mm_132682.1	chr16	42955460	42955660	+	1	NA	NA	NA	-20	NR_002445	170658	Mm.375824	NR_002445		BC002163	-	NADH dehydrogenase Fe-S protein 5 pseudogene	pseudo	0.030000	0.437811	
mm_137541.1	chr17	27556670	27556870	+	1	NA	NA	NA	117	NM_001166477	111241	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1-rs1	ENSMUSG00000041059|Hmgi-rs1	high mobility group AT-hook I, related sequence 1	protein-coding	0.080000	0.597015	
mm_106216.1	chr11	116852991	116853191	-	1	NA	NA	NA	3	NM_011358	20382	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0.105000	0.651741	-35(GGGTATAAATGC,-,0.00)
mm_54208.1	chr6	25689227	25689427	-	1	NA	NA	NA	653	NM_010338	14763	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	0.035000	0.512438	
mm_162997.1	chr11	30139347	30139547	-	1	NA	NA	NA	58810	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.030000	0.502488	
mm_101492.1	chr11	31779381	31779581	-	1	NA	NA	NA	45066	NR_102310	414116	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.000000	0.507463	
mm_109984.1	chr12	13249111	13249311	-	1	NA	NA	NA	-37	NM_134040	104721	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	0.115000	0.661692	
mm_120100.1	chr14	58072193	58072393	+	1	NA	NA	NA	-393	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.175000	0.781095	
mm_55990.1	chr6	85961868	85962068	-	1	NA	NA	NA	-301	NM_028099	72102	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	0.020000	0.522388	
mm_129435.1	chr15	78495118	78495318	-	1	NA	NA	NA	-152	NM_008368	16185	Mm.35287	NM_008368	ENSMUSG00000068227	Il2rb	CD122|IL-15Rbeta|IL15Rbeta|Il-2/15Rbeta|Il-2Rbeta|p70	interleukin 2 receptor, beta chain	protein-coding	0.015000	0.567164	
mm_35989.1	chr4	55530847	55531047	-	1	NA	NA	NA	1528	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.055000	0.597015	
mm_45806.1	chr5	87591473	87591673	-	1	NA	NA	NA	38	NM_023135	20860	Mm.89655	NM_023135	ENSMUSG00000029272	Sult1e1	EST|ST1E1|Ste	sulfotransferase family 1E, member 1	protein-coding	0.020000	0.417910	85(CCTTTTAAATTG,+,0.00)
mm_106108.1	chr11	116306623	116306823	-	1	NA	NA	NA	15	NM_016857	53413	Mm.22530	NM_016857	ENSMUSG00000020792	Exoc7	Exo70|sec70	exocyst complex component 7	protein-coding	0.095000	0.676617	
mm_133376.1	chr16	84710390	84710590	+	1	NA	NA	NA	-2533	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.025000	0.467662	
mm_104027.1	chr11	86201072	86201272	-	1	NA	NA	NA	21	NM_178309	237911	Mm.186143	NM_178309	ENSMUSG00000034329	Brip1	3110009N10Rik|8030460J03Rik|Bach1|FACJ|Fancj|OF	BRCA1 interacting protein C-terminal helicase 1	protein-coding	0.075000	0.601990	
mm_152842.1	chr19	23448267	23448467	-	1	NA	NA	NA	-45	NM_174857	71738	Mm.50841	NM_174857	ENSMUSG00000033207	Mamdc2	1200015L10Rik|AI591564|mamcan	MAM domain containing 2	protein-coding	0.020000	0.587065	-5(GCTTTAAAATTC,+,0.00)
mm_84952.1	chr9	83250029	83250229	-	1	NA	NA	NA	-103522	NM_026122	94353	Mm.244426	NM_026122	ENSMUSG00000066456	Hmgn3	1110002A15Rik|6330514M13Rik|BB071015|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding	0.025000	0.492537	
mm_149588.1	chr19	16132761	16132961	+	1	NA	NA	NA	30	NM_008139	14682	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.210000	0.850746	
mm_88709.1	chr10	80150866	80151066	+	1	NA	NA	NA	1284	NM_001305799	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.065000	0.706468	
mm_83667.1	chr9	49715874	49716074	-	1	NA	NA	NA	83095	NM_001081445	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding	0.005000	0.308458	
mm_142296.1	chr17	40880452	40880652	-	1	NA	NA	NA	6	NM_027834	71583	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	0.050000	0.621891	
mm_163483.1	chr12	108760745	108760945	+	1	NA	NA	NA	-32466	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.030000	0.517413	
mm_115260.1	chr13	110400588	110400788	+	1	NA	NA	NA	5644	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.000000	0.358209	-76(CTGTTTAAAGGC,-,0.00)
mm_39446.1	chr5	17574331	17574531	+	1	NA	NA	NA	-385	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.050000	0.522388	-87(TGCCTTAAAAGG,-,0.00),-86(GCCTTAAAAGGA,+,0.00),-85(CCTTAAAAGGAT,+,0.00),-4(GCTTTTCAAGAG,+,0.00)
mm_160585.1	chr9	64235170	64235370	+	1	NA	NA	NA	69	NM_033607	93841	Mm.390180	NM_033607	ENSMUSG00000035337	Uchl4	-	ubiquitin carboxyl-terminal esterase L4	protein-coding	0.020000	0.507463	
mm_93875.1	chr10	123264598	123264798	-	1	NA	NA	NA	622	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	0.135000	0.731343	
mm_91534.1	chr10	39122178	39122378	-	1	NA	NA	NA	11617	NM_183254	66337	Mm.45187	NM_183254	ENSMUSG00000051736	Fam229b	1700025K23Rik	family with sequence similarity 229, member B	protein-coding	0.005000	0.402985	
mm_16503.1	chr2	181240517	181240717	+	1	NA	NA	NA	1410	NM_183162	229003	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.020000	0.572139	
mm_51655.1	chr6	86077980	86078180	+	1	NA	NA	NA	32	NM_001271859	11519	Mm.104155	NM_013458	ENSMUSG00000030000	Add2	2900072M03Rik|add97	adducin 2 (beta)	protein-coding	0.010000	0.547264	
mm_59.1	chr1	6574081	6574281	+	1	NA	NA	NA	86950	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.015000	0.328358	-93(CCTTTAATAAAA,+,0.00)
mm_95391.1	chr11	49250457	49250657	+	1	NA	NA	NA	5	NM_001110150	17308	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.090000	0.746269	
mm_80350.1	chr9	75184086	75184286	+	1	NA	NA	NA	-47828	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.005000	0.398010	
mm_124316.1	chr14	103219069	103219269	-	1	NA	NA	NA	-119603	NM_001347600	50789	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.005000	0.442786	
mm_115338.1	chr13	112489879	112490079	+	1	NA	NA	NA	25909	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.015000	0.388060	
mm_127628.1	chr15	102462428	102462628	+	1	NA	NA	NA	3358	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.005000	0.407960	
mm_83116.1	chr9	40390298	40390498	-	1	NA	NA	NA	56926	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.020000	0.492537	
mm_35829.1	chr4	47474216	47474416	-	1	NA	NA	NA	51	NM_019998	56737	Mm.22218	NM_019998	ENSMUSG00000039740	Alg2	1110018A23Rik|1300013N08Rik|ALPG2|CDGIi|MNCb-5081	asparagine-linked glycosylation 2 (alpha-1,3-mannosyltransferase)	protein-coding	0.075000	0.611940	
mm_83280.1	chr9	43105684	43105884	-	1	NA	NA	NA	-66	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0.140000	0.796020	
mm_106242.1	chr11	117780559	117780759	-	1	NA	NA	NA	24	NM_145439	217353	Mm.286963	NM_145439	ENSMUSG00000025572	Tmc6	D11Ertd204e|EVER1	transmembrane channel-like gene family 6	protein-coding	0.045000	0.592040	
mm_144184.1	chr18	7868384	7868584	+	1	NA	NA	NA	-348	NM_001282093	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.050000	0.507463	
mm_74275.1	chr8	125109088	125109288	+	1	NA	NA	NA	54993	NM_174854	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	0.005000	0.402985	
mm_104819.1	chr11	98999134	98999334	-	1	NA	NA	NA	-16218	NM_178596	353155	Mm.453253	NM_178596	ENSMUSG00000047197	Gjd3	Gja11|Gjc1|cx30.2	gap junction protein, delta 3	protein-coding	0.015000	0.452736	
mm_7982.1	chr1	134099174	134099374	-	1	NA	NA	NA	-11968	NM_001284524	71884	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.035000	0.527363	
mm_142609.1	chr17	46830024	46830224	-	1	NA	NA	NA	1289	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.025000	0.412935	-69(CCTTATATAACT,+,0.00)
mm_81823.1	chr9	118049668	118049868	+	1	NA	NA	NA	9246	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.005000	0.313433	16(TGCTTTTAAAAG,-,0.00),17(GCTTTTAAAAGT,+,0.00)
mm_68680.1	chr7	118994998	118995198	-	1	NA	NA	NA	113	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.150000	0.786070	
mm_136233.1	chr16	90726670	90726870	-	1	NA	NA	NA	601	NM_025642	66578	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0.040000	0.487562	
mm_76073.1	chr8	78813095	78813295	-	1	NA	NA	NA	7957	NM_001191004	78651	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.010000	0.457711	
mm_28922.1	chr3	98858031	98858231	-	1	NA	NA	NA	1663	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.000000	0.378109	
mm_143134.1	chr17	57217794	57217994	-	1	NA	NA	NA	-666	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.005000	0.427861	
mm_48107.1	chr5	137108829	137109029	-	1	NA	NA	NA	7278	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.010000	0.363184	
mm_128798.1	chr15	66813112	66813312	-	1	NA	NA	NA	18617	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.005000	0.542289	
mm_93355.1	chr10	103028530	103028730	-	1	NA	NA	NA	147	NM_172553	216285	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding	0.055000	0.611940	
mm_28514.1	chr3	92584301	92584501	-	1	NA	NA	NA	4623	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.010000	0.592040	
mm_83884.1	chr9	55411165	55411365	-	1	NA	NA	NA	84316	NM_172923	244886	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.030000	0.527363	-99(CGCCTTTAAAGA,-,0.00),-98(GCCTTTAAAGAT,+,0.00)
mm_23158.1	chr3	40531517	40531717	+	1	NA	NA	NA	-8705	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.085000	0.701493	
mm_5392.1	chr1	33480422	33480622	-	1	NA	NA	NA	189272	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	0.025000	0.557214	
mm_164060.1	chr14	113574429	113574629	+	1	NA	NA	NA	-1257436	NR_045661	75822	Mm.410813	NR_045661		4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0.020000	0.447761	
mm_84366.1	chr9	64810942	64811142	-	1	NA	NA	NA	31	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.045000	0.572139	
mm_41726.1	chr5	102481515	102481715	+	1	NA	NA	NA	224	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.050000	0.641791	
mm_154354.1	chrM	5943	6143	+	1	NA	NA	NA	NA	NA									0.020000	0.407960	89(GGCTATATAGGA,-,0.00)
mm_105617.1	chr11	106788764	106788964	-	1	NA	NA	NA	-370	NM_007840	13207	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0.070000	0.597015	
mm_54835.1	chr6	42586106	42586306	-	1	NA	NA	NA	11166	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.437811	
mm_144662.1	chr18	34315664	34315864	+	1	NA	NA	NA	-15381	NM_025527	66384	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	0.020000	0.507463	
mm_164747.1	chr17	74016820	74017020	-	1	NA	NA	NA	30996	NM_053188	94224	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.000000	0.388060	
mm_116329.1	chr13	38036802	38037002	-	1	NA	NA	NA	35	NM_027724	71213	Mm.314688	NM_027724	ENSMUSG00000044566	Cage1	4933427I01Rik|Ctag3	cancer antigen 1	protein-coding	0.080000	0.631841	
mm_145926.1	chr18	67133003	67133203	+	1	NA	NA	NA	-457	NM_010307	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.080000	0.631841	
mm_12666.1	chr2	75683105	75683305	+	1	NA	NA	NA	21458	NR_132727	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.020000	0.522388	
mm_58449.1	chr7	3303605	3303805	+	1	NA	NA	NA	173	NM_011102	18752	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	0.070000	0.646766	
mm_84914.1	chr9	80003968	80004168	-	1	NA	NA	NA	-26186	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.025000	0.547264	
mm_59677.1	chr7	28392865	28393065	+	1	NA	NA	NA	-31	NM_019458	54624	Mm.7916	NM_019458	ENSMUSG00000003437	Paf1	5730511K23Rik|AA675045	Paf1, RNA polymerase II complex component	protein-coding	0.065000	0.601990	
mm_168469.1	chr1	14864929	14865129	+	1	NA	NA	NA	53833	NM_177781	277328	Mm.186329	NM_177781	ENSMUSG00000032769	Trpa1	Anktm1|TRPA1b	transient receptor potential cation channel, subfamily A, member 1	protein-coding	0.045000	0.472637	76(TACTTTAAAAGA,-,0.00)
mm_80820.1	chr9	96719391	96719591	+	1	NA	NA	NA	12184	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.065000	0.631841	
mm_101603.1	chr11	34783775	34783975	-	1	NA	NA	NA	30	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.030000	0.597015	-50(GAGTTTAAAAAG,-,0.00),-48(GTTTAAAAAGAG,+,0.00)
mm_141065.1	chr17	25792292	25792492	-	1	NA	NA	NA	2	NM_145410	214917	Mm.26783	NM_145410	ENSMUSG00000057411	Fam173a	-	family with sequence similarity 173, member A	protein-coding	0.075000	0.606965	
mm_77535.1	chr8	123032282	123032482	-	1	NA	NA	NA	9902	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.000000	0.422886	
mm_12990.1	chr2	90885413	90885613	+	1	NA	NA	NA	-273	NM_026161	67445	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0.015000	0.567164	
mm_40712.1	chr5	65885635	65885835	+	1	NA	NA	NA	22166	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.015000	0.417910	
mm_91413.1	chr10	31609572	31609772	-	1	NA	NA	NA	53	NM_001146349	268291	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.085000	0.716418	
mm_104100.1	chr11	86695260	86695460	-	1	NA	NA	NA	11279	NM_001098810	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.010000	0.358209	
mm_95668.1	chr11	53804907	53805107	+	1	NA	NA	NA	34534	NM_001159396	16362	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.015000	0.447761	-69(GGATTTAAAAAC,-,0.00)
mm_53496.1	chr6	135279562	135279762	+	1	NA	NA	NA	-25326	NM_001080553	14840	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	0.010000	0.472637	-60(TCTTTTAAAGTC,+,0.00)
mm_127807.1	chr15	4988412	4988612	-	1	NA	NA	NA	75261	NM_001243837	109828	Mm.208034	NM_001243837	ENSMUSG00000079105	C7	A530026G17|Gm1238	complement component 7	protein-coding	0.010000	0.417910	
mm_112257.1	chr12	113859591	113859791	-	1	NA	NA	NA	315783	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.005000	0.482587	
mm_157992.1	chrX	94538988	94539188	-	1	NA	NA	NA	2986	NM_019791	94275	Mm.27578	NM_019791	ENSMUSG00000025151	Maged1	2810433C11Rik|5430405L04Rik|DXBwg1492e|Dlixin|Dlxin-1|Dlxin1|MAGE-D1|NRAGE|mFLJ00163	melanoma antigen, family D, 1	protein-coding	0.005000	0.592040	
mm_158006.1	chrX	95211695	95211895	-	1	NA	NA	NA	-45256	NM_001033329	236915	Mm.44841	NM_001033329	ENSMUSG00000025656	Arhgef9	9630036L12Rik	CDC42 guanine nucleotide exchange factor (GEF) 9	protein-coding	0.005000	0.507463	
mm_45281.1	chr5	64932832	64933032	-	1	NA	NA	NA	-233	NM_030682	21897	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.045000	0.547264	-47(CCTTTTCGAGGA,+,0.00)
mm_32992.1	chr4	120405246	120405446	+	1	NA	NA	NA	65	NM_013883	29871	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	0.175000	0.830846	
mm_128129.1	chr15	31356846	31357046	-	1	NA	NA	NA	10813	NM_001164441	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.025000	0.562189	
mm_141045.1	chr17	25433185	25433385	-	1	NA	NA	NA	498	NM_021415	58226	Mm.268378	NM_021415	ENSMUSG00000024112	Cacna1h	Cav3.2|MNCb-1209|alpha13.2	calcium channel, voltage-dependent, T type, alpha 1H subunit	protein-coding	0.095000	0.721393	
mm_56521.1	chr6	99518539	99518739	-	1	NA	NA	NA	2354	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.005000	0.333333	
mm_108340.1	chr12	80210093	80210293	+	1	NA	NA	NA	50178	NM_134156	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.010000	0.532338	
mm_120795.1	chr14	74734744	74734944	+	1	NA	NA	NA	2547	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.015000	0.393035	
mm_3982.1	chr1	164275510	164275710	+	1	NA	NA	NA	12	NM_029115	74895	Mm.167258	NM_029115	ENSMUSG00000026578	Ccdc181	4930455F23Rik|AI427889	coiled-coil domain containing 181	protein-coding	0.090000	0.641791	
mm_118360.1	chr13	115101631	115101831	-	1	NA	NA	NA	233	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.070000	0.621891	
mm_73008.1	chr8	93810989	93811189	+	1	NA	NA	NA	251	NM_001113384	14681	Mm.251445	NM_010308	ENSMUSG00000031748	Gnao1	AW050213|Galphao|Gnao|alphaO	guanine nucleotide binding protein, alpha O	protein-coding	0.080000	0.636816	
mm_66658.1	chr7	45714614	45714814	-	1	NA	NA	NA	493	NM_020011	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.020000	0.557214	
mm_31101.1	chr4	41760406	41760606	+	1	NA	NA	NA	63	NM_001172054	16157	Mm.193451	NM_010549	ENSMUSG00000073889	Il11ra1	AI314697|GP130|Il-11ra|Il11ra|Il11ra2|NR1	interleukin 11 receptor, alpha chain 1	protein-coding	0.055000	0.691542	
mm_111163.1	chr12	83562366	83562566	-	1	NA	NA	NA	34681	NM_183154	217695	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0.005000	0.492537	
mm_141427.1	chr17	29443754	29443954	-	1	NA	NA	NA	-47191	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.010000	0.537313	
mm_22603.1	chr3	14506088	14506288	+	1	NA	NA	NA	25489	NM_080852	140918	Mm.215250	NM_080852	ENSMUSG00000039710	Slc7a12	Asc-2|XAT1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 12	protein-coding	0.005000	0.363184	
mm_134979.1	chr16	32079077	32079277	-	1	NA	NA	NA	165	NM_177326	224105	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 protein (Cdc42/Rac)-activated kinase 2	protein-coding	0.110000	0.741294	
mm_9473.1	chr1	173335234	173335434	-	1	NA	NA	NA	-1831	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	0.005000	0.572139	
mm_161016.1	chr11	120348392	120348592	-	1	NA	NA	NA	3	NM_001313923	11465	Mm.196173	NM_009609	ENSMUSG00000062825	Actg1	AL023024|Actg|Actl|E51	actin, gamma, cytoplasmic 1	protein-coding	0.160000	0.721393	-95(CGCCATATATGG,-,0.00),-93(CCATATATGGAC,+,0.00),-33(GCTTAAATAGCG,+,0.00)
mm_150548.1	chr19	39319434	39319634	+	1	NA	NA	NA	32449	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.000000	0.353234	
mm_135956.1	chr16	74672375	74672575	-	1	NA	NA	NA	-261563	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.005000	0.407960	
mm_32236.1	chr4	102255010	102255210	+	1	NA	NA	NA	171	NM_019840	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.015000	0.517413	
mm_14973.1	chr2	152104710	152104910	+	1	NA	NA	NA	-714	NM_029688	76650	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.020000	0.502488	
mm_94594.1	chr11	11808981	11809181	+	1	NA	NA	NA	-119	NM_001163360	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.100000	0.606965	16(CGCTCTATGAGG,-,0.00)
mm_126555.1	chr15	82147248	82147448	+	1	NA	NA	NA	79	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.095000	0.701493	
mm_27648.1	chr3	63899357	63899557	-	1	NA	NA	NA	29928	NM_177856	329659	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding	0.045000	0.577114	
mm_168056.1	chrY	90813465	90813665	+	1	NA	NA	NA	25841	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.015000	0.457711	
mm_163574.1	chr13	30948842	30949042	+	1	NA	NA	NA	-1181	NM_153072	210554	Mm.450571	NM_153072	ENSMUSG00000076430	Hus1b	-	HUS1 checkpoint clamp component B	protein-coding	0.000000	0.348259	
mm_38204.1	chr4	135615430	135615630	-	1	NA	NA	NA	-11125	NR_015613	73937	Mm.292326	NM_028688	ENSMUSG00000086788	1700029M20Rik	4930406E24Rik	RIKEN cDNA 1700029M20 gene	ncRNA	0.015000	0.597015	
mm_157893.1	chrX	76602821	76603021	-	1	NA	NA	NA	3	NM_001201395	74987	Mm.107996	NM_001201395	ENSMUSG00000079525	Cldn34d	4930468A15Rik	claudin 34D	protein-coding	0.005000	0.422886	
mm_164051.1	chr14	102828056	102828256	-	1	NA	NA	NA	154476	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.005000	0.497512	
mm_156809.1	chrX	163927627	163927827	+	1	NA	NA	NA	18710	NM_001290379	108012	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	0.000000	0.393035	
mm_2252.1	chr1	91073603	91073803	+	1	NA	NA	NA	20259	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.000000	0.363184	-85(GCATATTAAAAG,-,0.00)
mm_130655.1	chr15	100636996	100637196	-	1	NA	NA	NA	-156	NM_001033872	207818	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.095000	0.676617	
mm_147167.1	chr18	36726242	36726442	-	1	NA	NA	NA	473	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.040000	0.582090	
mm_30613.1	chr4	7455423	7455623	+	1	NA	NA	NA	-105165	NR_040645	71510	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0.010000	0.353234	
mm_143729.1	chr17	81380561	81380761	-	1	NA	NA	NA	-315576	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.010000	0.363184	
mm_26784.1	chr3	9609937	9610137	-	1	NA	NA	NA	48	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.155000	0.781095	
mm_15667.1	chr2	163323332	163323532	+	1	NA	NA	NA	74541	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	0.000000	0.437811	
mm_30167.1	chr3	144199288	144199488	-	1	NA	NA	NA	2944	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.010000	0.502488	
mm_140578.1	chr17	10209328	10209528	-	1	NA	NA	NA	109933	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.025000	0.487562	
mm_156580.1	chrX	152026435	152026635	+	1	NA	NA	NA	10107	NM_019710	24061	Mm.482095	NM_019710	ENSMUSG00000041133	Smc1a	5830426I24Rik|SMC-1A|Sb1.8|Smc1|Smc1alpha|Smc1l1|Smcb|mKIAA0178	structural maintenance of chromosomes 1A	protein-coding	0.025000	0.517413	54(CTCTTTAAACTC,+,0.00)
mm_172199.1	chr6	51469602	51469802	-	1	NA	NA	NA	192	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.100000	0.592040	
mm_155197.1	chrX	56474110	56474310	+	1	NA	NA	NA	19371	NM_172779	236790	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	0.025000	0.407960	-80(CCTTTTAGGCCT,+,0.00)
mm_76525.1	chr8	87472487	87472687	-	1	NA	NA	NA	5	NM_019626	12404	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0.125000	0.756219	
mm_130900.1	chr15	102405413	102405613	-	1	NA	NA	NA	-803	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.080000	0.626866	
mm_161458.1	chr15	76389898	76390098	+	1	NA	NA	NA	-33	NM_001162489	223658	Mm.123240	NM_175457	ENSMUSG00000022558	Mroh1	D330001F17Rik|Heatr7a	maestro heat-like repeat family member 1	protein-coding	0.030000	0.542289	25(CTTTTTAGATGC,+,0.00)
mm_112225.1	chr12	113430317	113430517	-	1	NA	NA	NA	-59148	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.482587	
mm_80534.1	chr9	80286240	80286440	+	1	NA	NA	NA	121306	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.030000	0.442786	72(GCTCTAATGGCC,+,0.00)
mm_56879.1	chr6	118997289	118997489	-	1	NA	NA	NA	111106	NM_001159534	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.015000	0.457711	
mm_96794.1	chr11	69980674	69980874	+	1	NA	NA	NA	-394	NM_026017	67181	Mm.41678	NM_026017	ENSMUSG00000018559	Ctdnep1	2610507E10Rik|Dullard	CTD nuclear envelope phosphatase 1	protein-coding	0.030000	0.562189	
mm_128879.1	chr15	73060950	73061150	-	1	NA	NA	NA	154	NM_001164641	76510	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.100000	0.701493	
mm_110195.1	chr12	27340272	27340472	-	1	NA	NA	NA	2346	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.010000	0.328358	
mm_31264.1	chr4	45203826	45204026	+	1	NA	NA	NA	19020	NM_001081172	666060	Mm.24783	NM_001081172	ENSMUSG00000035615	Frmpd1	BC031840|mKIAA0967	FERM and PDZ domain containing 1	protein-coding	0.010000	0.557214	
mm_116850.1	chr13	54759289	54759489	-	1	NA	NA	NA	7051	NM_033610	104069	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	0.020000	0.621891	
mm_34390.1	chr4	144927331	144927531	+	1	NA	NA	NA	34294	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.015000	0.497512	
mm_2366.1	chr1	93135236	93135436	+	1	NA	NA	NA	96	NM_001276710	11611	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	0.040000	0.611940	
mm_110817.1	chr12	72408232	72408432	-	1	NA	NA	NA	722	NM_001286448	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.105000	0.691542	
mm_124395.1	chr14	111778111	111778311	-	1	NA	NA	NA	103096	NM_198865	75409	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0.005000	0.452736	
mm_14811.1	chr2	146047120	146047320	+	1	NA	NA	NA	112436	NM_175280	78774	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	0.020000	0.517413	
mm_153092.1	chr19	32485759	32485959	-	1	NA	NA	NA	90	NM_010799	17330	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0.150000	0.736318	
mm_158051.1	chrX	100412499	100412699	-	1	NA	NA	NA	-12	NM_177746	245532	Mm.118171	NM_177746	ENSMUSG00000031220	Awat2	9430062J17Rik|ARAT|Dgat2l4|WS	acyl-CoA wax alcohol acyltransferase 2	protein-coding	0.025000	0.582090	
mm_57676.1	chr6	128494724	128494924	-	1	NA	NA	NA	31896	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.010000	0.507463	-37(CCATTTAAAGCC,+,0.00)
mm_36368.1	chr4	76449677	76449877	-	1	NA	NA	NA	-1171491	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.175000	0.825871	
mm_16966.1	chr2	17690037	17690237	-	1	NA	NA	NA	40931	NM_028757	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0.000000	0.427861	
mm_91021.1	chr10	17799341	17799541	-	1	NA	NA	NA	3222	NM_138628	378431	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	0.005000	0.472637	
mm_11411.1	chr2	31572613	31572813	+	1	NA	NA	NA	62	NM_001290548	320267	Mm.207261	NM_001033389	ENSMUSG00000026843	Fubp3	A330051M14Rik|AV006371|FBP3|Marta2	far upstream element (FUSE) binding protein 3	protein-coding	0.075000	0.636816	
mm_162324.1	chr1	39614548	39614748	+	1	NA	NA	NA	36534	NM_170597	263764	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0.005000	0.522388	-43(CCTTTTCTGCCC,+,0.00)
mm_109578.1	chr12	112489436	112489636	+	1	NA	NA	NA	88	NM_177039	319942	Mm.185209	NM_177039	ENSMUSG00000043122	A530016L24Rik	Nrac	RIKEN cDNA A530016L24 gene	protein-coding	0.035000	0.572139	
mm_37936.1	chr4	132922509	132922709	-	1	NA	NA	NA	-58	NM_001163792	230789	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0.165000	0.766169	
mm_100691.1	chr11	3527838	3528038	-	1	NA	NA	NA	11354	NM_013870	29856	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.025000	0.626866	
mm_140838.1	chr17	23670802	23671002	-	1	NA	NA	NA	-2706	NM_181821	353502	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	0.020000	0.582090	
mm_152696.1	chr19	17125432	17125632	-	1	NA	NA	NA	169414	NM_181348	353211	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.025000	0.507463	
mm_53187.1	chr6	125481837	125482037	+	1	NA	NA	NA	12818	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.020000	0.472637	
mm_103009.1	chr11	69695946	69696146	-	1	NA	NA	NA	52	NM_011614	21944	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0.055000	0.651741	
mm_86034.1	chr9	113708134	113708334	-	1	NA	NA	NA	25	NM_001164678	18571	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0.150000	0.751244	
mm_61618.1	chr7	80153148	80153348	+	1	NA	NA	NA	-33593	NM_013659	20352	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.010000	0.517413	
mm_34243.1	chr4	141222622	141222822	+	1	NA	NA	NA	8766	NM_001081174	76166	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723	REM2 and RAB-like small GTPase 1	protein-coding	0.010000	0.412935	
mm_93527.1	chr10	115315481	115315681	-	1	NA	NA	NA	10	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.105000	0.691542	-5(CGCCATTAGAGG,-,0.00)
mm_111310.1	chr12	85817730	85817930	-	1	NA	NA	NA	6715	NM_021446	58520	Mm.143795	NM_021446	ENSMUSG00000021252	0610007P14Rik	1190004E09Rik|AU019315|C77855|ORF11	RIKEN cDNA 0610007P14 gene	protein-coding	0.015000	0.497512	
mm_13397.1	chr2	103970132	103970332	+	1	NA	NA	NA	-55	NM_008505	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.150000	0.776119	
mm_79813.1	chr9	64179177	64179377	+	1	NA	NA	NA	-20	NM_183316	330959	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	0.070000	0.592040	
mm_66565.1	chr7	45239244	45239444	-	1	NA	NA	NA	-229	NM_001290804	12493	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0.015000	0.582090	
mm_3748.1	chr1	155972425	155972625	+	1	NA	NA	NA	730	NM_001039184	74081	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	0.030000	0.507463	
mm_100664.1	chr11	3291552	3291752	-	1	NA	NA	NA	1195	NM_019574	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.050000	0.562189	
mm_101768.1	chr11	43836356	43836556	-	1	NA	NA	NA	33	NM_007416	11548	Mm.39086	NM_007416	ENSMUSG00000050541	Adra1b	[a]1b	adrenergic receptor, alpha 1b	protein-coding	0.135000	0.766169	
mm_169474.1	chr14	69337066	69337266	+	1	NA	NA	NA	15	NM_026174	67464	Mm.489765	NM_026174	ENSMUSG00000095463	Entpd4	1200014F22Rik|4930513O14Rik|A430102M06Rik|AI414893|Lysal1|mKIAA0392	ectonucleoside triphosphate diphosphohydrolase 4	protein-coding	0.155000	0.746269	
mm_3279.1	chr1	136579570	136579770	+	1	NA	NA	NA	-45231	NM_177643	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.030000	0.462687	
mm_9086.1	chr1	168432064	168432264	-	1	NA	NA	NA	5	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.020000	0.582090	
mm_37342.1	chr4	119658021	119658221	-	1	NA	NA	NA	824	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.000000	0.532338	
mm_82894.1	chr9	32549418	32549618	-	1	NA	NA	NA	-8066	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.025000	0.527363	
mm_106209.1	chr11	116851197	116851397	-	1	NA	NA	NA	1797	NM_011358	20382	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0.005000	0.343284	
mm_139050.1	chr17	46297327	46297527	+	1	NA	NA	NA	-56	NM_001286028	106565	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta-like 2 homolog (Drosophila)	protein-coding	0.055000	0.567164	
mm_50351.1	chr6	48589549	48589749	+	1	NA	NA	NA	204	NM_183309	330305	Mm.123868	NM_183309	ENSMUSG00000052730	Gm5111	A630038D02|EG330305	predicted gene 5111	protein-coding	0.010000	0.457711	
mm_127669.1	chr15	102657372	102657572	+	1	NA	NA	NA	13575	NM_026468	67942	Mm.10314	NM_026468	ENSMUSG00000062683	Atp5g2	1810041M08Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	protein-coding	0.000000	0.388060	
mm_81420.1	chr9	109055939	109056139	+	1	NA	NA	NA	1173	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.050000	0.542289	
mm_122632.1	chr14	51145764	51145964	-	1	NA	NA	NA	903	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.010000	0.522388	
mm_132861.1	chr16	48431235	48431435	+	1	NA	NA	NA	98	NM_010816	17450	Mm.250060	NM_010816	ENSMUSG00000022652	Morc1	Morc	microrchidia 1	protein-coding	0.065000	0.562189	
mm_52276.1	chr6	108658708	108658908	+	1	NA	NA	NA	-1821	NM_011498	20893	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0.055000	0.577114	
mm_106686.1	chr12	3350092	3350292	+	1	NA	NA	NA	-14940	NM_008445	16570	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.005000	0.577114	-35(GGGCATATAAGG,-,0.00),-33(GCATATAAGGGC,+,0.00)
mm_57858.1	chr6	129507064	129507264	-	1	NA	NA	NA	1	NM_001301094	108078	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	0.040000	0.477612	-35(GGCTATTTAAAC,-,0.00)
mm_69237.1	chr7	127708802	127709002	-	1	NA	NA	NA	-136	NM_001347652	12055	Mm.89667	NM_009746	ENSMUSG00000030814	Bcl7c	C230096E12Rik	B cell CLL/lymphoma 7C	protein-coding	0.135000	0.751244	
mm_11692.1	chr2	35680470	35680670	+	1	NA	NA	NA	-11424	NM_001001602	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.010000	0.522388	
mm_158696.1	chrX	161832022	161832222	-	1	NA	NA	NA	114569	NM_198409	24004	Mm.328503	NM_198409	ENSMUSG00000043518	Rai2	3f8	retinoic acid induced 2	protein-coding	0.070000	0.497512	
mm_90805.1	chr10	7663991	7664191	-	1	NA	NA	NA	-483	NM_001347228	18537	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	0.015000	0.427861	
mm_31378.1	chr4	47474580	47474780	+	1	NA	NA	NA	19	NM_024171	66212	Mm.20188	NM_024171	ENSMUSG00000053317	Sec61b	1190006C12Rik|AI326121|AW122942	Sec61 beta subunit	protein-coding	0.055000	0.606965	
mm_43157.1	chr5	125849922	125850122	+	1	NA	NA	NA	317604	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0.010000	0.477612	
mm_128362.1	chr15	41448433	41448633	-	1	NA	NA	NA	1051	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.020000	0.537313	-30(TTGCTTAAAAGG,-,0.00),-28(GCTTAAAAGGAA,+,0.00)
mm_1441.1	chr1	67220423	67220623	+	1	NA	NA	NA	97496	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.020000	0.432836	
mm_80019.1	chr9	67903505	67903705	+	1	NA	NA	NA	63209	NM_177184	320528	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.020000	0.477612	-54(TCCTTTAGAGTC,+,0.00)
mm_54482.1	chr6	35133609	35133809	-	1	NA	NA	NA	28	NM_001164412	53621	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0.095000	0.666667	
mm_14020.1	chr2	122150862	122151062	+	1	NA	NA	NA	3275	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.030000	0.467662	
mm_166329.1	chr5	113364806	113365006	+	1	NA	NA	NA	7612	NM_001012726	503692	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	0.020000	0.427861	
mm_159541.1	chr4	88805836	88806036	+	1	NA	NA	NA	-90	NM_001243165	545647	Mm.380019	NM_001243165	ENSMUSG00000096582	Gm13289	OTTMUSG00000011290	predicted gene 13289	protein-coding	0.110000	0.691542	
mm_45655.1	chr5	77095150	77095350	-	1	NA	NA	NA	17	NM_001159901	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.090000	0.686567	
mm_159853.1	chr5	137739686	137739886	-	1	NA	NA	NA	212	NM_175521	243300	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	0.030000	0.567164	
mm_156307.1	chrX	136837947	136838147	+	1	NA	NA	NA	15301	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.000000	0.323383	-52(CAATATATAAGG,-,0.00)
mm_35658.1	chr4	43558072	43558272	-	1	NA	NA	NA	4411	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.015000	0.567164	
mm_53863.1	chr6	149325319	149325519	+	1	NA	NA	NA	16005	NM_001289662	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.000000	0.353234	
mm_21199.1	chr2	155495483	155495683	-	1	NA	NA	NA	19263	NM_144786	207182	Mm.41757	NM_144786	ENSMUSG00000027603	Ggt7	1110017C11Rik|6330563L03Rik|Ggtl3	gamma-glutamyltransferase 7	protein-coding	0.010000	0.527363	25(CCTTTAAGAACC,+,0.00)
mm_55608.1	chr6	71888683	71888883	-	1	NA	NA	NA	19979	NM_027275	69956	Mm.30256	NM_027275	ENSMUSG00000063884	Ptcd3	2610034F17Rik|2810422B04Rik|AA589622|AU045708|MRP-S39	pentatricopeptide repeat domain 3	protein-coding	0.000000	0.263682	
mm_114779.1	chr13	88821829	88822029	+	1	NA	NA	NA	457	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.060000	0.606965	
mm_125002.1	chr15	24255465	24255665	+	1	NA	NA	NA	1158199	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.000000	0.343284	
mm_57201.1	chr6	122850609	122850809	-	1	NA	NA	NA	5448	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.020000	0.402985	
mm_97545.1	chr11	78925086	78925286	+	1	NA	NA	NA	-105	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.125000	0.716418	-28(GGCGATAAAGGG,-,0.00)
mm_143775.1	chr17	81704787	81704987	-	1	NA	NA	NA	33500	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.010000	0.462687	
mm_151036.1	chr19	47023294	47023494	+	1	NA	NA	NA	-8205	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.030000	0.532338	
mm_65744.1	chr7	28543950	28544150	-	1	NA	NA	NA	3165	NM_026716	68416	Mm.25210	NM_026716	ENSMUSG00000084174	Sycn	0910001K16Rik|1810038B08Rik|SYL	syncollin	protein-coding	0.025000	0.552239	
mm_151734.1	chr19	4906515	4906715	-	1	NA	NA	NA	12	NM_001033128	52028	Mm.23636	NM_001033128	ENSMUSG00000006464	Bbs1	AI451249|D19Ertd609e	Bardet-Biedl syndrome 1 (human)	protein-coding	0.075000	0.577114	
mm_41303.1	chr5	90467247	90467447	+	1	NA	NA	NA	6477	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.005000	0.383085	-12(CCTTTTCAGGGC,+,0.00)
mm_101184.1	chr11	17044236	17044436	-	1	NA	NA	NA	-7598	NM_029861	380686	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	0.000000	0.437811	-33(ATGCTTAAAAGG,-,0.00),-31(GCTTAAAAGGAC,+,0.00)
mm_151960.1	chr19	5801446	5801646	-	1	NA	NA	NA	1126	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.348259	
mm_86702.1	chr10	18526522	18526722	+	1	NA	NA	NA	19454	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	0.030000	0.611940	
mm_2604.1	chr1	120120747	120120947	+	1	NA	NA	NA	72	NM_001037999	13167	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	0.055000	0.597015	
mm_140998.1	chr17	24886229	24886429	-	1	NA	NA	NA	21	NM_011956	26426	Mm.36718	NM_011956	ENSMUSG00000039183	Nubp2	D17Wsu11e	nucleotide binding protein 2	protein-coding	0.075000	0.562189	
mm_1225.1	chr1	62750275	62750475	+	1	NA	NA	NA	44357	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.005000	0.323383	-32(GTTTTTTAAAGG,-,0.00),-31(TTTTTTAAAGGA,+,0.00)
mm_89643.1	chr10	96641994	96642194	+	1	NA	NA	NA	25093	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.005000	0.398010	
mm_133472.1	chr16	89278309	89278509	+	1	NA	NA	NA	72548	NM_001163615	622935	Mm.459837	NM_001163615	ENSMUSG00000091039	Krtap20-2	1190004K03Rik|EG622935|Gm6371	keratin associated protein 20-2	protein-coding	0.005000	0.477612	-33(GTGTATAAAAGG,-,0.00)
mm_148094.1	chr18	73815675	73815875	-	1	NA	NA	NA	-383	NM_145494	107029	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	0.105000	0.636816	
mm_89203.1	chr10	86498188	86498388	+	1	NA	NA	NA	608	NM_001164495	27204	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	0.020000	0.497512	-86(TCCTTTAAGGCC,+,0.00),-85(CCTTTAAGGCCG,+,0.00)
mm_95521.1	chr11	52122171	52122371	+	1	NA	NA	NA	-4475	NR_037221	100526467		NR_037221	ENSMUSG00000092870	Mir3061	mir-3061|mmu-mir-3061	microRNA 3061	ncRNA	0.020000	0.407960	
mm_99676.1	chr11	105985644	105985844	+	1	NA	NA	NA	-50	NR_104047	100379610	Mm.754	NR_104047	ENSMUSG00000085297	Gm11651	OTTMUSG00000003114	predicted gene 11651	ncRNA	0.015000	0.537313	
mm_109618.1	chr12	112763364	112763564	+	1	NA	NA	NA	2809	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.010000	0.532338	
mm_89765.1	chr10	100096421	100096621	+	1	NA	NA	NA	80700	NM_013598	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.015000	0.393035	
mm_116160.1	chr13	30629871	30630071	-	1	NA	NA	NA	14928	NR_045975	75090	Mm.292232	NR_045975	ENSMUSG00000086263	4930519D14Rik	-	RIKEN cDNA 4930519D14 gene	ncRNA	0.030000	0.507463	-96(ACTTTTAAAGTG,+,0.00)
mm_143684.1	chr17	80062217	80062417	-	1	NA	NA	NA	-49	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.100000	0.686567	
mm_95788.1	chr11	54958562	54958762	+	1	NA	NA	NA	4278	NM_021327	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.000000	0.527363	-33(ACCCTTAAAAAG,-,0.00),-31(CCTTAAAAAGGC,+,0.00)
mm_42864.1	chr5	122227034	122227234	+	1	NA	NA	NA	16847	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.000000	0.447761	
mm_9474.1	chr1	173335944	173336144	-	1	NA	NA	NA	-2541	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	0.035000	0.567164	-86(CCTCTTATGGCA,+,0.00)
mm_57490.1	chr6	125285933	125286133	-	1	NA	NA	NA	9	NM_009446	22144	Mm.287784	NM_009446	ENSMUSG00000067702	Tuba3a	AI528779|M[a]3|Tuba3	tubulin, alpha 3A	protein-coding	0.075000	0.681592	
mm_123820.1	chr14	70599722	70599922	-	1	NA	NA	NA	13	NM_194345	239170	Mm.247582	NM_194345	ENSMUSG00000022095	Fam160b2	G430067P06Rik|Rai16	family with sequence similarity 160, member B2	protein-coding	0.130000	0.800995	
mm_29110.1	chr3	104863770	104863970	-	1	NA	NA	NA	635	NM_009797	12340	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	0.010000	0.492537	-91(CCATTTATAGGT,+,0.00)
mm_141409.1	chr17	29395425	29395625	-	1	NA	NA	NA	34611	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.010000	0.522388	
mm_157003.1	chrX	7574178	7574378	-	1	NA	NA	NA	3	NM_001290574	54646	Mm.148163	NM_138605	ENSMUSG00000039556	Ppp1r3f	DXImx48e|R3F|RF3|Sfc15	protein phosphatase 1, regulatory (inhibitor) subunit 3F	protein-coding	0.130000	0.761194	-38(CCTTTTCAGGCC,+,0.00)
mm_82185.1	chr9	123936827	123937027	+	1	NA	NA	NA	31765	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.000000	0.437811	
mm_64662.1	chr7	4164631	4164831	-	1	NA	NA	NA	-32	NM_021454	58804	Mm.34268	NM_021454	ENSMUSG00000063838	Cdc42ep5	1700027J19Rik|2010007O02Rik|Borg3|C85526|CEP5	CDC42 effector protein (Rho GTPase binding) 5	protein-coding	0.025000	0.557214	
mm_22106.1	chr2	169963085	169963285	-	1	NA	NA	NA	2	NR_131974	446211	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0.010000	0.482587	
mm_56441.1	chr6	97459191	97459391	-	1	NA	NA	NA	-5	NM_001346639	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.030000	0.507463	66(CCCTTTAAATGA,-,0.00)
mm_165388.1	chr2	131430561	131430761	+	1	NA	NA	NA	-61201	NM_001177834	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.015000	0.487562	
mm_65844.1	chr7	29247858	29248058	-	1	NA	NA	NA	509	NM_028179	72275	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0.035000	0.611940	
mm_126495.1	chr15	81663880	81664080	+	1	NA	NA	NA	91	NR_110362	214669	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	l(3)mbt-like 2 (Drosophila)	protein-coding	0.070000	0.616915	
mm_86142.1	chr9	117046437	117046637	-	1	NA	NA	NA	205946	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.035000	0.512438	
mm_95779.1	chr11	54909731	54909931	+	1	NA	NA	NA	6977	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.015000	0.502488	
mm_43502.1	chr5	136987270	136987470	+	1	NA	NA	NA	351	NM_011962	26433	Mm.251003	NM_011962	ENSMUSG00000004846	Plod3	AI414586|LH3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	protein-coding	0.090000	0.711443	
mm_85580.1	chr9	107295524	107295724	-	1	NA	NA	NA	-1035	NM_001317354	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.005000	0.507463	
mm_35567.1	chr4	41640204	41640404	-	1	NA	NA	NA	-2	NM_027147	69638	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.115000	0.726368	
mm_161048.1	chr12	41024452	41024652	+	1	NA	NA	NA	462	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.035000	0.532338	-30(GGATTTTAAAGG,-,0.00)
mm_83985.1	chr9	57426002	57426202	-	1	NA	NA	NA	14012	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.005000	0.462687	
mm_8877.1	chr1	162860003	162860203	-	1	NA	NA	NA	-103	NM_001330318	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.010000	0.537313	
mm_153605.1	chr19	43921315	43921515	-	1	NA	NA	NA	18783	NM_028029	71972	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.020000	0.353234	
mm_49016.1	chr6	4758576	4758776	+	1	NA	NA	NA	11370	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.338308	
mm_136841.1	chr17	12755925	12756125	+	1	NA	NA	NA	13681	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.010000	0.606965	
mm_33985.1	chr4	137719149	137719349	+	1	NA	NA	NA	-5212	NR_138592	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.020000	0.557214	
mm_34760.1	chr4	152341450	152341650	+	1	NA	NA	NA	2899	NM_001081376	269610	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding	0.040000	0.517413	
mm_102597.1	chr11	62281281	62281481	-	1	NA	NA	NA	14	NM_027198	69747	Mm.141150	NM_027198	ENSMUSG00000014243	Zswim7	2410012H22Rik	zinc finger SWIM-type containing 7	protein-coding	0.150000	0.751244	
mm_48949.1	chr6	4540458	4540658	+	1	NA	NA	NA	34940	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.020000	0.422886	
mm_97952.1	chr11	83695166	83695366	+	1	NA	NA	NA	-8790	NM_001081957	100034251	Mm.24097	NM_001081957	ENSMUSG00000069792	Wfdc17	Amwap|Gm11428|OTTMUSG00000000971	WAP four-disulfide core domain 17	protein-coding	0.005000	0.452736	-35(GGCTATAAAACC,-,0.00)
mm_40741.1	chr5	66676917	66677117	+	1	NA	NA	NA	-520	NR_102714	101202684	Mm.381468	NR_102714	ENSMUSG00000087601	Uchl1os	Gm16832|Uchl1as	ubiquitin carboxy-terminal hydrolase L1, opposite strand	ncRNA	0.050000	0.651741	
mm_5920.1	chr1	55088068	55088268	-	1	NA	NA	NA	20	NM_008303	15528	Mm.215667	NM_008303	ENSMUSG00000073676	Hspe1	10kDa|Hsp10|mt-cpn10	heat shock protein 1 (chaperonin 10)	protein-coding	0.140000	0.711443	
mm_171628.1	chr4	17409273	17409473	+	1	NA	NA	NA	-443520	NR_135158	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.065000	0.651741	
mm_80707.1	chr9	92249991	92250191	+	1	NA	NA	NA	-103	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.020000	0.477612	
mm_96333.1	chr11	65272140	65272340	+	1	NA	NA	NA	-2251	NM_146386	214384	Mm.32257	NM_145136	ENSMUSG00000020542	Myocd	BSAC2A|Srfcp	myocardin	protein-coding	0.000000	0.228856	
mm_119147.1	chr14	31336701	31336901	+	1	NA	NA	NA	77	NM_009796	12339	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.115000	0.711443	
mm_115511.1	chr13	4609056	4609256	-	1	NA	NA	NA	8	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.025000	0.572139	
mm_104250.1	chr11	88864418	88864618	-	1	NA	NA	NA	68	NM_001042541	11640	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	0.120000	0.736318	
mm_125404.1	chr15	41603222	41603422	+	1	NA	NA	NA	155840	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.015000	0.587065	
mm_68963.1	chr7	126583249	126583449	-	1	NA	NA	NA	-113	NM_009907	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.045000	0.567164	36(TGCTCTTAAAGG,-,0.00),37(GCTCTTAAAGGT,+,0.00)
mm_60143.1	chr7	38183558	38183758	+	1	NA	NA	NA	-129	NM_028166	72244	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0.050000	0.636816	
mm_122805.1	chr14	54568136	54568336	-	1	NA	NA	NA	9425	NM_010590	16475	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	0.010000	0.527363	
mm_68931.1	chr7	126494231	126494431	-	1	NA	NA	NA	6976	NM_001163713	233870	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	0.010000	0.587065	
mm_105072.1	chr11	100759648	100759848	-	1	NA	NA	NA	30	NM_001081194	380728	Mm.297539	NM_001081194	ENSMUSG00000035355	Kcnh4	BEC2	potassium voltage-gated channel, subfamily H (eag-related), member 4	protein-coding	0.105000	0.746269	
mm_161928.1	chr18	78184523	78184723	-	1	NA	NA	NA	-5451	NM_001110273	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.015000	0.497512	
mm_91384.1	chr10	30628402	30628602	-	1	NA	NA	NA	-10136	NM_025798	66847	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	0.030000	0.487562	-32(CTTTAAATACCC,+,0.00)
mm_151377.1	chr19	55976586	55976786	+	1	NA	NA	NA	81365	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.020000	0.547264	
mm_27121.1	chr3	31310156	31310356	-	1	NA	NA	NA	63	NM_172861	241919	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.045000	0.572139	
mm_151187.1	chr19	53421280	53421480	+	1	NA	NA	NA	-30807	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	0.020000	0.522388	
mm_158401.1	chrX	136831995	136832195	-	1	NA	NA	NA	9349	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.035000	0.577114	84(CCCCATAAAGGA,-,0.00)
mm_106502.1	chr11	120404815	120405015	-	1	NA	NA	NA	-26169	NM_027980	71885	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0.000000	0.388060	
mm_50187.1	chr6	41684266	41684466	+	1	NA	NA	NA	-65	NM_029671	76606	Mm.272520	NM_029671	ENSMUSG00000029867	1700034O15Rik	-	RIKEN cDNA 1700034O15 gene	protein-coding	0.010000	0.462687	
mm_73132.1	chr8	94973468	94973668	+	1	NA	NA	NA	-3541	NM_001198894	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.040000	0.542289	
mm_7571.1	chr1	124845822	124846022	-	1	NA	NA	NA	589805	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.010000	0.517413	
mm_136351.1	chr16	92695125	92695325	-	1	NA	NA	NA	2104	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.040000	0.482587	
mm_120817.1	chr14	75131930	75132130	+	1	NA	NA	NA	907	NM_001247984	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.010000	0.378109	
mm_141495.1	chr17	31519848	31520048	-	1	NA	NA	NA	-167	NM_030087	78330	Mm.28349	NM_030087	ENSMUSG00000024038	Ndufv3	1500032D16Rik	NADH dehydrogenase (ubiquinone) flavoprotein 3	protein-coding	0.045000	0.552239	
mm_144750.1	chr18	35607833	35608033	+	1	NA	NA	NA	9266	NM_026420	67869	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	0.010000	0.412935	
mm_21387.1	chr2	157555482	157555682	-	1	NA	NA	NA	-4496	NM_001291129	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.000000	0.363184	
mm_34478.1	chr4	148418343	148418543	+	1	NA	NA	NA	26308	NM_027873	71707	Mm.292503	NM_027873	ENSMUSG00000047719	Ubiad1	1200002M06Rik|AI426463|AW320947|Tere1	UbiA prenyltransferase domain containing 1	protein-coding	0.020000	0.587065	
mm_98230.1	chr11	88068224	88068424	+	1	NA	NA	NA	45	NM_016686	22344	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	0.140000	0.761194	
mm_64853.1	chr7	13034609	13034809	-	1	NA	NA	NA	68	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.095000	0.641791	
mm_44336.1	chr5	15883708	15883908	-	1	NA	NA	NA	-42	NR_045974	75058	Mm.183467	NR_045974	ENSMUSG00000105185	4930519H02Rik	-	RIKEN cDNA 4930519H02 gene	ncRNA	0.000000	0.452736	38(CCCTATTTATGC,-,0.00)
mm_62710.1	chr7	110768017	110768217	+	1	NA	NA	NA	-89	NM_001276301	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.030000	0.587065	
mm_104073.1	chr11	86586494	86586694	-	1	NA	NA	NA	-2436	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.030000	0.472637	30(CCTTTTCAAGAG,+,0.00)
mm_125681.1	chr15	66670652	66670852	+	1	NA	NA	NA	-18	NM_009375	21819	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	0.005000	0.532338	-34(TGCTATAAAGGC,-,0.00)
mm_83519.1	chr9	46229855	46230055	-	1	NA	NA	NA	1325	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.035000	0.552239	
mm_131585.1	chr16	18498700	18498900	+	1	NA	NA	NA	-71	NM_001285494	13972	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|OTTMUSG00000033458|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	0.165000	0.756219	
mm_57566.1	chr6	127128660	127128860	-	1	NA	NA	NA	-19208	NM_177003	319801	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	0.000000	0.308458	
mm_123931.1	chr14	73366325	73366525	-	1	NA	NA	NA	18846	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.040000	0.477612	
mm_112289.1	chr12	114487519	114487719	-	1	NA	NA	NA	-18153	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.010000	0.383085	
mm_34989.1	chr4	156027389	156027589	+	1	NA	NA	NA	1147	NM_021985	21936	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	0.005000	0.497512	
mm_135160.1	chr16	35860391	35860591	-	1	NA	NA	NA	10891	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.055000	0.557214	
mm_143163.1	chr17	57224816	57225016	-	1	NA	NA	NA	3220	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.025000	0.562189	
mm_80857.1	chr9	98425401	98425601	+	1	NA	NA	NA	2540	NM_011254	19659	Mm.279741	NM_011254	ENSMUSG00000046402	Rbp1	CRBPI|Crbp|Rbp-1	retinol binding protein 1, cellular	protein-coding	0.055000	0.497512	
mm_36891.1	chr4	107680656	107680856	-	1	NA	NA	NA	3406	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.020000	0.562189	
mm_60114.1	chr7	35586161	35586361	+	1	NA	NA	NA	14	NM_178263	245886	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding	0.050000	0.562189	
mm_58253.1	chr6	145075889	145076089	-	1	NA	NA	NA	168	NM_007532	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.090000	0.646766	
mm_90270.1	chr10	122679998	122680198	+	1	NA	NA	NA	783	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.055000	0.393035	
mm_62453.1	chr7	101406506	101406706	+	1	NA	NA	NA	12218	NM_198096	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.010000	0.582090	
mm_40805.1	chr5	69918996	69919196	+	1	NA	NA	NA	-326792	NM_001347363	67980	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	0.005000	0.258706	
mm_156865.1	chrX	164436912	164437112	+	1	NA	NA	NA	18	NM_001313737	68854	Mm.33225	NM_026853	ENSMUSG00000031382	Asb11	1110067L12Rik|1600009D24Rik	ankyrin repeat and SOCS box-containing 11	protein-coding	0.020000	0.378109	57(GGCTTTAAAAAC,-,0.00)
mm_85422.1	chr9	103489206	103489406	-	1	NA	NA	NA	-8978	NM_001002896	107993	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding	0.025000	0.547264	
mm_91423.1	chr10	32889811	32890011	-	1	NA	NA	NA	4	NM_001013411	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding	0.110000	0.731343	
mm_128470.1	chr15	50850285	50850485	-	1	NA	NA	NA	38664	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.323383	
mm_54923.1	chr6	47813293	47813493	-	1	NA	NA	NA	119	NM_009787	12304	Mm.2442	NM_009787	ENSMUSG00000025823	Pdia4	AI987846|Cai|ERp-72|Erp72	protein disulfide isomerase associated 4	protein-coding	0.105000	0.681592	
mm_134824.1	chr16	26073828	26074028	-	1	NA	NA	NA	31856	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.000000	0.437811	
mm_62321.1	chr7	100371968	100372168	+	1	NA	NA	NA	-165	NM_001017985	277939	Mm.276374	NM_001017985	ENSMUSG00000047248	C2cd3	AU020772	C2 calcium-dependent domain containing 3	protein-coding	0.055000	0.542289	
mm_156694.1	chrX	159472747	159472947	+	1	NA	NA	NA	13722	NM_001313753	78283	Mm.160079	NM_001081124	ENSMUSG00000041020	Map7d2	1600028E09Rik|2900002G04Rik|5330432J06Rik|C030036K04Rik|Mtap7d2	MAP7 domain containing 2	protein-coding	0.010000	0.457711	
mm_160096.1	chr7	18355067	18355267	-	1	NA	NA	NA	-160	NM_011963	26438	Mm.89991	NM_011963	ENSMUSG00000003505	Psg18	Cea-3|Cea3|mmCGM6	pregnancy specific glycoprotein 18	protein-coding	0.010000	0.517413	
mm_155155.1	chrX	52926856	52927056	+	1	NA	NA	NA	14742	NM_001290546	70998	Mm.26870	NM_027642	ENSMUSG00000025626	Phf6	2700007B13Rik|4931428F02Rik|mKIAA1823	PHD finger protein 6	protein-coding	0.030000	0.537313	
mm_18427.1	chr2	60761200	60761400	-	1	NA	NA	NA	-38697	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.005000	0.402985	82(TACTTTATAAAC,-,0.00)
mm_19753.1	chr2	104849966	104850166	-	1	NA	NA	NA	-216	NM_178695	228413	Mm.259609	NM_178695	ENSMUSG00000027171	Prrg4	9930111I18Rik|TMG4	proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	protein-coding	0.010000	0.348259	
mm_43497.1	chr5	136967802	136968002	+	1	NA	NA	NA	33	NM_021719	60363	Mm.87202	NM_021719	ENSMUSG00000001739	Cldn15	2210009B08Rik|BB107105	claudin 15	protein-coding	0.030000	0.582090	
mm_9520.1	chr1	173755843	173756043	-	1	NA	NA	NA	10976	NM_008329	15951	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.000000	0.437811	
mm_95472.1	chr11	50793621	50793821	+	1	NA	NA	NA	34010	NM_013922	30944	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding	0.010000	0.442786	
mm_73381.1	chr8	105664073	105664273	+	1	NA	NA	NA	-26733	NM_001033320	234695	Mm.471640	NM_001033320	ENSMUSG00000050357	Carmil2	CG1399-PB|D130029J02Rik|Gm585|Rltpr	capping protein regulator and myosin 1 linker 2	protein-coding	0.010000	0.472637	
mm_52851.1	chr6	121861028	121861228	+	1	NA	NA	NA	22587	NM_008645	17836	Mm.1311	NM_008645	ENSMUSG00000059908	Mug1	-	murinoglobulin 1	protein-coding	0.000000	0.437811	
mm_4198.1	chr1	171226185	171226385	+	1	NA	NA	NA	1231	NM_013474	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.020000	0.537313	
mm_90703.1	chr10	130363583	130363783	+	1	NA	NA	NA	30558	NM_001081448	625068	Mm.359168	NM_001081448	ENSMUSG00000070601	Vmn2r84	EG625068	vomeronasal 2, receptor 84	protein-coding	0.000000	0.402985	
mm_131779.1	chr16	22895197	22895397	+	1	NA	NA	NA	-911	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.045000	0.482587	
mm_135644.1	chr16	52366778	52366978	-	1	NA	NA	NA	86203	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.323383	-46(AGCCCTTAAAGG,-,0.00),-45(GCCCTTAAAGGA,-,0.00),-44(CCCTTAAAGGAC,+,0.00)
mm_13735.1	chr2	118112277	118112477	+	1	NA	NA	NA	501	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.025000	0.497512	61(CTTTTTATACTG,+,0.00)
mm_58517.1	chr7	4136949	4137149	+	1	NA	NA	NA	-7	NM_172736	232798	Mm.22831	NM_172736	ENSMUSG00000035545	Leng8	AW049671	leukocyte receptor cluster (LRC) member 8	protein-coding	0.110000	0.646766	
mm_29667.1	chr3	122619591	122619791	-	1	NA	NA	NA	23	NM_001114665	214459	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	0.105000	0.736318	
mm_27519.1	chr3	57294790	57294990	-	1	NA	NA	NA	7029	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	0.025000	0.517413	
mm_27979.1	chr3	80913504	80913704	-	1	NA	NA	NA	56	NM_001345956	14658	Mm.275639	NM_010298	ENSMUSG00000028020	Glrb	AI853901|Glyrb|spa|spastic	glycine receptor, beta subunit	protein-coding	0.190000	0.805970	
mm_155362.1	chrX	71050035	71050235	+	1	NA	NA	NA	-121	NM_001256048	333639	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	0.125000	0.691542	
mm_147225.1	chr18	38203735	38203935	-	1	NA	NA	NA	5927	NM_029357	75599	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.040000	0.606965	
mm_110629.1	chr12	57542172	57542372	-	1	NA	NA	NA	3849	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.040000	0.601990	
mm_92237.1	chr10	69328057	69328257	-	1	NA	NA	NA	24755	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.020000	0.457711	-33(GGCCATAAAAAG,-,0.00),-31(CCATAAAAAGAC,+,0.00)
mm_149104.1	chr19	8943019	8943219	+	1	NA	NA	NA	1199	NM_011842	23942	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	0.000000	0.412935	
mm_35952.1	chr4	53118745	53118945	-	1	NA	NA	NA	41050	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.000000	0.393035	
mm_164363.1	chr16	23050256	23050456	+	1	NA	NA	NA	-7944	NM_023125	16644	Mm.2160	NM_023125	ENSMUSG00000022875	Kng1	Kng	kininogen 1	protein-coding	0.010000	0.512438	
mm_155911.1	chrX	101849255	101849455	+	1	NA	NA	NA	-30	NM_001163610	100042480	Mm.232	NM_001163610	ENSMUSG00000079481	Nhsl2	1110062M06Rik|6430511F03|AI225852|AW488865|EG621083|ENSMUSG00000073037|Gm10456	NHS-like 2	protein-coding	0.060000	0.686567	
mm_86408.1	chr9	124066769	124066969	-	1	NA	NA	NA	-35314	NM_009915	12772	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.000000	0.348259	
mm_46407.1	chr5	104093104	104093304	-	1	NA	NA	NA	-15596	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.050000	0.502488	
mm_100252.1	chr11	117326402	117326602	+	1	NA	NA	NA	-5213	NM_017380	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.010000	0.582090	
mm_49890.1	chr6	38892344	38892544	+	1	NA	NA	NA	-16254	NM_001294143	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.010000	0.442786	
mm_44369.1	chr5	17813006	17813206	-	1	NA	NA	NA	22790	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.298507	21(GAGTTTATAAAG,-,0.00),77(TCCTATAAAGGG,+,0.00),77(TCCTATAAAGGG,-,0.00)
mm_82622.1	chr9	21798625	21798825	-	1	NA	NA	NA	-179	NM_145611	235041	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	0.090000	0.721393	
mm_9449.1	chr1	172590573	172590773	-	1	NA	NA	NA	-105	NM_029084	74748	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	0.020000	0.557214	
mm_172341.1	chr7	11069621	11069821	-	1	NA	NA	NA	63976	NM_001013765	245109	Mm.131747	NM_001013765	ENSMUSG00000054272	Zscan4c	Gm397|XM_142517|Zscan4d	zinc finger and SCAN domain containing 4C	protein-coding	0.010000	0.472637	-38(GGCTATAAAAGG,-,0.00)
mm_67433.1	chr7	80371388	80371588	-	1	NA	NA	NA	-113	NM_172903	140481	Mm.269245	NM_172903	ENSMUSG00000038886	Man2a2	1700052O22Rik|4931438M07Rik|AI480988|MX|Man IIx	mannosidase 2, alpha 2	protein-coding	0.120000	0.716418	
mm_33355.1	chr4	129461575	129461775	+	1	NA	NA	NA	-4	NM_133889	100383	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	0.060000	0.611940	70(GCTTTTCGAGGG,+,0.00)
mm_65990.1	chr7	30534927	30535127	-	1	NA	NA	NA	33	NM_001289670	233071	Mm.190704	NM_178252	ENSMUSG00000036882	Arhgap33	AW324378|NOMA-GAP|Snx26|TCGAP	Rho GTPase activating protein 33	protein-coding	0.140000	0.756219	
mm_14856.1	chr2	148681109	148681309	+	1	NA	NA	NA	89	NM_028986	74533	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0.085000	0.686567	
mm_22650.1	chr3	14869933	14870133	+	1	NA	NA	NA	6495	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.035000	0.552239	
mm_172946.1	chr9	81677977	81678177	+	1	NA	NA	NA	-45525	NM_010482	15551	Mm.445308	NM_010482	ENSMUSG00000049511	Htr1b	-	5-hydroxytryptamine (serotonin) receptor 1B	protein-coding	0.025000	0.348259	
mm_68881.1	chr7	126447587	126447787	-	1	NA	NA	NA	15386	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.005000	0.562189	
mm_69039.1	chr7	126799469	126799669	-	1	NA	NA	NA	-315	NM_007438	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.050000	0.611940	
mm_57532.1	chr6	126535338	126535538	-	1	NA	NA	NA	117	NM_145983	16493	Mm.222831	NM_145983	ENSMUSG00000045534	Kcna5	Kv1.5	potassium voltage-gated channel, shaker-related subfamily, member 5	protein-coding	0.015000	0.626866	
mm_130083.1	chr15	89378838	89379038	-	1	NA	NA	NA	316	NM_001013022	70113	Mm.247273	NM_001013022	ENSMUSG00000047394	Odf3b	2010001J22Rik	outer dense fiber of sperm tails 3B	protein-coding	0.040000	0.601990	
mm_59257.1	chr7	24870002	24870202	+	1	NA	NA	NA	45	NM_027732	71241	Mm.66855	NM_027732	ENSMUSG00000011349	Dmrtc2	4933432E21Rik|Dmrt7	doublesex and mab-3 related transcription factor like family C2	protein-coding	0.090000	0.616915	
mm_1090.1	chr1	59670740	59670940	+	1	NA	NA	NA	-6	NM_009460	22218	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0.075000	0.562189	
mm_98166.1	chr11	87749642	87749842	+	1	NA	NA	NA	-7122	NR_029555	387160		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.035000	0.567164	-64(GTCTTTTTGAGG,-,0.00)
mm_172923.1	chr9	68653692	68653892	+	1	NA	NA	NA	6	NM_013646	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.080000	0.562189	
mm_131910.1	chr16	23280092	23280292	+	1	NA	NA	NA	-10278	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.010000	0.378109	
mm_64189.1	chr7	141460988	141461188	+	1	NA	NA	NA	-6	NM_001025103	213573	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.030000	0.626866	
mm_55633.1	chr6	72314914	72315114	-	1	NA	NA	NA	10404	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.010000	0.452736	
mm_27961.1	chr3	80688023	80688223	-	1	NA	NA	NA	114668	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.005000	0.228856	-6(GCTTTTAAATAA,+,0.00)
mm_126684.1	chr15	84906533	84906733	+	1	NA	NA	NA	-16795	NM_016714	18141	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0.010000	0.497512	
mm_8352.1	chr1	150269365	150269565	-	1	NA	NA	NA	-49952	NM_024458	20028	Mm.440883	NM_024458	ENSMUSG00000006007	Pdc	Rpr-1|Rpr1	phosducin	protein-coding	0.045000	0.427861	
mm_44829.1	chr5	33936227	33936427	-	1	NA	NA	NA	-69	NM_011914	24116	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	0.130000	0.691542	
mm_153410.1	chr19	40564950	40565150	-	1	NA	NA	NA	23413	NM_019698	56454	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	0.045000	0.567164	
mm_49330.1	chr6	21215325	21215525	+	1	NA	NA	NA	-684	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.095000	0.686567	
mm_90343.1	chr10	127129546	127129746	+	1	NA	NA	NA	-8486	NM_001171026	216440	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.000000	0.527363	
mm_98824.1	chr11	97362279	97362479	+	1	NA	NA	NA	-172	NM_138657	192157	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.140000	0.830846	-84(CCCTCTATGAGG,-,0.00)
mm_93997.1	chr10	127563717	127563917	-	1	NA	NA	NA	-29258	NM_183297	104080	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.015000	0.592040	
mm_96934.1	chr11	70525278	70525478	+	1	NA	NA	NA	21	NM_008946	19175	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	0.070000	0.606965	
mm_37441.1	chr4	123286798	123286998	-	1	NA	NA	NA	3613	NM_148917	230721	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	0.005000	0.452736	
mm_45113.1	chr5	45639164	45639364	-	1	NA	NA	NA	-11	NR_102378	319251	Mm.402857	NR_102378	ENSMUSG00000097825	9630001P10Rik	-	RIKEN cDNA 9630001P10 gene	ncRNA	0.090000	0.631841	
mm_145013.1	chr18	38631592	38631792	+	1	NA	NA	NA	-30424	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.060000	0.587065	-57(GTCTCTTTAAGA,-,0.00),-55(CTCTTTAAGAGC,-,0.00),-54(TCTTTAAGAGCC,+,0.00)
mm_17327.1	chr2	26503567	26503767	-	1	NA	NA	NA	155	NM_008714	18128	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0.120000	0.751244	
mm_67144.1	chr7	73455430	73455630	-	1	NA	NA	NA	-79756	NR_040324	319783	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.035000	0.477612	
mm_20504.1	chr2	130424666	130424866	-	1	NA	NA	NA	-125	NM_001114541	319513	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	0.075000	0.626866	
mm_51971.1	chr6	91758435	91758635	+	1	NA	NA	NA	48858	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.005000	0.388060	
mm_147531.1	chr18	53033529	53033729	-	1	NA	NA	NA	-130982	NR_035420	100316749		NR_035420	ENSMUSG00000080573	Mir467f	Mirn467f|mmu-mir-467f	microRNA 467f	ncRNA	0.005000	0.497512	
mm_166993.1	chr7	46714973	46715173	-	1	NA	NA	NA	603	NM_011315	20210	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	0.005000	0.497512	
mm_148314.1	chr18	83768007	83768207	-	1	NA	NA	NA	318455	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.015000	0.517413	
mm_105373.1	chr11	103218356	103218556	-	1	NA	NA	NA	-24	NM_177801	328019	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0.050000	0.646766	
mm_64204.1	chr7	141475128	141475328	+	1	NA	NA	NA	-8	NM_053082	64540	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.100000	0.701493	-73(GCTTTTCAAGGC,+,0.00)
mm_76722.1	chr8	94838759	94838959	-	1	NA	NA	NA	442	NM_026452	67914	Mm.169234	NM_026452	ENSMUSG00000031782	Coq9	2310005O14Rik|C78387	coenzyme Q9	protein-coding	0.070000	0.537313	
mm_126265.1	chr15	79109000	79109200	+	1	NA	NA	NA	117	NM_177461	27008	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	0.150000	0.791045	
mm_16141.1	chr2	170731879	170732079	+	1	NA	NA	NA	172	NM_001163686	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0.060000	0.636816	
mm_93711.1	chr10	118868685	118868885	-	1	NA	NA	NA	118	NM_001014390	69181	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.155000	0.766169	
mm_162662.1	chr10	5367752	5367952	-	1	NA	NA	NA	120462	NM_001347711	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.020000	0.398010	
mm_16872.1	chr2	12301861	12302061	-	1	NA	NA	NA	-17	NM_001001309	241226	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0.105000	0.711443	
mm_44824.1	chr5	33747396	33747596	-	1	NA	NA	NA	25190	NM_001163216	14184	Mm.6904	NM_008010	ENSMUSG00000054252	Fgfr3	CD333|FR3|Fgfr-3|Flg-2|HBGFR|Mfr3|sam3	fibroblast growth factor receptor 3	protein-coding	0.020000	0.582090	
mm_42971.1	chr5	123141333	123141533	+	1	NA	NA	NA	-760	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.040000	0.497512	-37(CCTTTAATAAAG,+,0.00)
mm_122129.1	chr14	31160223	31160423	-	1	NA	NA	NA	8318	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.025000	0.557214	
mm_125644.1	chr15	62220414	62220614	+	1	NA	NA	NA	-1063	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.005000	0.378109	
mm_57670.1	chr6	128488011	128488211	-	1	NA	NA	NA	38609	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.020000	0.497512	
mm_7174.1	chr1	92180198	92180398	-	1	NA	NA	NA	43	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.100000	0.686567	
mm_95652.1	chr11	53724529	53724729	+	1	NA	NA	NA	3835	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.005000	0.447761	
mm_139038.1	chr17	46202770	46202970	+	1	NA	NA	NA	15	NM_028198	72322	Mm.275039	NM_028198	ENSMUSG00000067150	Xpo5	2410004H11Rik|2700038C24Rik|AI648907|AW549301|Exp5|RanBp21|mKIAA1291	exportin 5	protein-coding	0.090000	0.661692	
mm_64679.1	chr7	4509794	4509994	-	1	NA	NA	NA	6081	NM_001277903	21955	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0.035000	0.537313	
mm_49481.1	chr6	29531164	29531364	+	1	NA	NA	NA	1982	NM_001252382	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.025000	0.597015	
mm_23242.1	chr3	51221107	51221307	+	1	NA	NA	NA	-3240	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.025000	0.492537	
mm_32060.1	chr4	97777519	97777719	+	1	NA	NA	NA	-7	NM_001122953	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.160000	0.830846	
mm_123195.1	chr14	58183119	58183319	-	1	NA	NA	NA	110533	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.010000	0.512438	
mm_18255.1	chr2	52263564	52263764	-	1	NA	NA	NA	-27338	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.010000	0.452736	
mm_172929.1	chr9	73113363	73113563	+	1	NA	NA	NA	-6	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0.080000	0.567164	
mm_55679.1	chr6	72610343	72610543	-	1	NA	NA	NA	6305	NM_009444	22135	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	0.015000	0.447761	
mm_129717.1	chr15	81919904	81920104	-	1	NA	NA	NA	6209	NM_030229	78929	Mm.215115	NM_030229	ENSMUSG00000022476	Polr3h	5031409G22Rik|RPC8	polymerase (RNA) III (DNA directed) polypeptide H	protein-coding	0.020000	0.601990	-40(CCTTTTCGAGGC,+,0.00)
mm_138688.1	chr17	35969826	35970026	+	1	NA	NA	NA	-176	NM_013854	224742	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	0.070000	0.601990	
mm_122970.1	chr14	54974250	54974450	-	1	NA	NA	NA	1426	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.005000	0.437811	
mm_81912.1	chr9	120092014	120092214	+	1	NA	NA	NA	-19	NM_007720	12776	Mm.442098	NM_007720	ENSMUSG00000042262	Ccr8	C-C|C-C CKR-8|CC-CKR-8|CCR-8|CKR-8|Cmkbr8|mCCR8	chemokine (C-C motif) receptor 8	protein-coding	0.005000	0.522388	
mm_53379.1	chr6	129512512	129512712	+	1	NA	NA	NA	55	NM_001081186	330428	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	0.010000	0.467662	
mm_53144.1	chr6	125235849	125236049	+	1	NA	NA	NA	1078	NM_001033126	21940	Mm.367714	NM_001033126	ENSMUSG00000030336	Cd27	S152|Tnfrsf7|Tp55	CD27 antigen	protein-coding	0.020000	0.467662	
mm_36997.1	chr4	110290799	110290999	-	1	NA	NA	NA	-3372	NM_001347178	15572	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein-coding	0.005000	0.442786	
mm_27702.1	chr3	66981843	66982043	-	1	NA	NA	NA	-172	NM_001302357	20429	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0.050000	0.502488	
mm_158048.1	chrX	99135848	99136048	-	1	NA	NA	NA	-113	NM_010110	13641	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	0.050000	0.597015	
mm_137842.1	chr17	31039763	31039963	+	1	NA	NA	NA	-17831	NM_009593	11307	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding	0.015000	0.517413	
mm_114343.1	chr13	60762467	60762667	+	1	NA	NA	NA	23797	NM_199148	218275	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.010000	0.467662	0(CTTTTTCTAGGG,+,0.00)
mm_128534.1	chr15	54853316	54853516	-	1	NA	NA	NA	66730	NM_015744	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.005000	0.363184	
mm_3445.1	chr1	150102720	150102920	+	1	NA	NA	NA	2789	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.398010	
mm_109860.1	chr12	4841497	4841697	-	1	NA	NA	NA	-2	NM_016863	14226	Mm.20453	NM_016863	ENSMUSG00000020635	Fkbp1b	12.6kDa|AW494148|FKBP12.6|calstabin2	FK506 binding protein 1b	protein-coding	0.110000	0.756219	
mm_35930.1	chr4	53032270	53032470	-	1	NA	NA	NA	20490	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.035000	0.467662	
mm_19424.1	chr2	91931650	91931850	-	1	NA	NA	NA	-48	NM_001012335	17242	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.080000	0.701493	
mm_82766.1	chr9	26920778	26920978	-	1	NA	NA	NA	2203	NM_001281475	382064	Mm.335028	NM_001177509	ENSMUSG00000079644	Gm1110	-	predicted gene 1110	protein-coding	0.000000	0.368159	
mm_10290.1	chr2	10371177	10371377	+	1	NA	NA	NA	826	NM_001198808	353282	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0.030000	0.457711	84(GGGTTGTAAAGG,-,0.00)
mm_41064.1	chr5	86996994	86997194	+	1	NA	NA	NA	-3766	NM_172881	243085	Mm.312095	NM_172881	ENSMUSG00000035811	Ugt2b35	C730031G17	UDP glucuronosyltransferase 2 family, polypeptide B35	protein-coding	0.010000	0.373134	
mm_21699.1	chr2	164549228	164549428	-	1	NA	NA	NA	-13388	NM_026323	67701	Mm.27289	NM_026323	ENSMUSG00000017723	Wfdc2	1600023A02Rik|HE4|WAP5	WAP four-disulfide core domain 2	protein-coding	0.015000	0.432836	
mm_5105.1	chr1	5070237	5070437	-	1	NA	NA	NA	-52	NM_001177795	58175	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0.005000	0.472637	
mm_152158.1	chr19	7265816	7266016	-	1	NA	NA	NA	-1478	NM_054048	104383	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.010000	0.597015	-100(GGCTCTTAAAGA,-,0.00),-99(GCTCTTAAAGAG,+,0.00),-97(TCTTAAAGAGAC,+,0.00)
mm_109079.1	chr12	104408799	104408999	+	1	NA	NA	NA	2191	NM_009252	20716	Mm.482074	NM_009252	ENSMUSG00000021091	Serpina3n	Spi2-2|Spi2.2|Spi2/eb.4	serine (or cysteine) peptidase inhibitor, clade A, member 3N	protein-coding	0.010000	0.482587	
mm_144392.1	chr18	20671456	20671656	+	1	NA	NA	NA	6306	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.015000	0.462687	
mm_24663.1	chr3	94486205	94486405	+	1	NA	NA	NA	3583	NR_110353	78784	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.010000	0.378109	
mm_36547.1	chr4	86669937	86670137	-	1	NA	NA	NA	22	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.050000	0.616915	
mm_88608.1	chr10	79820918	79821118	+	1	NA	NA	NA	-3	NM_030218	78906	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.030000	0.606965	-30(AGCCATAAAAAG,-,0.00),-28(CCATAAAAAGGC,+,0.00)
mm_50387.1	chr6	48691268	48691468	+	1	NA	NA	NA	6790	NM_174990	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.010000	0.402985	
mm_137445.1	chr17	26531724	26531924	+	1	NA	NA	NA	-23352	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.015000	0.422886	17(GTTTAAAGAGGC,+,0.00)
mm_42621.1	chr5	118037924	118038124	+	1	NA	NA	NA	10200	NM_021344	57816	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	0.025000	0.621891	
mm_68658.1	chr7	118705647	118705847	-	1	NA	NA	NA	-9	NM_019580	56209	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	0.125000	0.716418	
mm_164730.1	chr17	64100349	64100549	+	1	NA	NA	NA	-49777	NR_130982	68771	Mm.443351	NR_130982		1110058D11Rik	-	RIKEN cDNA 1110058D11 gene	ncRNA	0.015000	0.383085	
mm_119683.1	chr14	53369919	53370119	+	1	NA	NA	NA	-874324	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.005000	0.482587	
mm_69956.1	chr7	142375896	142376096	-	1	NA	NA	NA	-2250	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.005000	0.542289	
mm_172500.1	chr7	67083052	67083252	+	1	NA	NA	NA	139306	NR_131044	76628	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0.015000	0.442786	
mm_146327.1	chr18	80708195	80708395	+	1	NA	NA	NA	-122	NM_001164112	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.120000	0.706468	
mm_79084.1	chr9	46242408	46242608	+	1	NA	NA	NA	1664	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.035000	0.547264	
mm_57521.1	chr6	125540212	125540412	-	1	NA	NA	NA	-12636	NM_011708	22371	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.035000	0.567164	
mm_116865.1	chr13	54930161	54930361	-	1	NA	NA	NA	-19150	NM_001311128	107448	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	0.015000	0.567164	
mm_91567.1	chr10	40033879	40034079	-	1	NA	NA	NA	-8711	NM_144821	215929	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.020000	0.502488	
mm_24890.1	chr3	96108500	96108700	+	1	NA	NA	NA	4073	NM_001025614	229603	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0.015000	0.507463	
mm_127321.1	chr15	100304065	100304265	+	1	NA	NA	NA	-652	NM_027334	70152	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	0.015000	0.422886	-61(TACTTTAAATGG,-,0.00),-59(CTTTAAATGGGC,+,0.00)
mm_74996.1	chr8	27223691	27223891	-	1	NA	NA	NA	5797	NM_013462	11556	Mm.278475	NM_013462	ENSMUSG00000031489	Adrb3	Adrb-3	adrenergic receptor, beta 3	protein-coding	0.025000	0.522388	
mm_23258.1	chr3	51340763	51340963	+	1	NA	NA	NA	-219	NM_023502	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.135000	0.736318	-20(CTATTTATACTC,+,0.00)
mm_25746.1	chr3	123264682	123264882	+	1	NA	NA	NA	-2714	NM_027135	69608	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	0.020000	0.507463	
mm_168295.1	chr11	104655276	104655476	-	1	NA	NA	NA	47376	NM_016780	16416	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding	0.060000	0.631841	
mm_97731.1	chr11	80394244	80394444	+	1	NA	NA	NA	11065	NM_001130171	22680	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0.010000	0.427861	-68(TACTTTATAGGC,-,0.00),-17(GCCCTTAAATAG,-,0.00),-15(CCTTAAATAGTA,+,0.00)
mm_60403.1	chr7	44475821	44476021	+	1	NA	NA	NA	5574	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.502488	
mm_110396.1	chr12	44206981	44207181	-	1	NA	NA	NA	2987	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.015000	0.398010	
mm_162611.1	chr1	183297215	183297415	+	1	NA	NA	NA	255	NM_181732	108909	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	0.080000	0.691542	
mm_3828.1	chr1	159523721	159523921	+	1	NA	NA	NA	52	NM_022312	21960	Mm.44701	NM_022312	ENSMUSG00000015829	Tnr	J1-tenascin|TN-R|janusin|restrictin	tenascin R	protein-coding	0.025000	0.512438	
mm_13944.1	chr2	121289605	121289805	+	1	NA	NA	NA	103	NM_032393	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.110000	0.686567	
mm_41471.1	chr5	91517586	91517786	+	1	NA	NA	NA	-14	NM_145562	231440	Mm.5002	NM_145562	ENSMUSG00000034981	Parm1	2210012L08Rik|9130213B05Rik|W91666	prostate androgen-regulated mucin-like protein 1	protein-coding	0.090000	0.721393	
mm_80424.1	chr9	77917325	77917525	+	1	NA	NA	NA	60	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.110000	0.686567	
mm_109852.1	chr12	4738253	4738453	-	1	NA	NA	NA	30	NM_029107	74855	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	0.040000	0.641791	
mm_44177.1	chr5	150987365	150987565	+	1	NA	NA	NA	34858	NM_013823	16591	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.015000	0.452736	48(CGCTTTAAAAGT,-,0.00),49(GCTTTAAAAGTC,+,0.00)
mm_97322.1	chr11	76916772	76916972	+	1	NA	NA	NA	12327	NM_025655	66601	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.010000	0.417910	
mm_68905.1	chr7	126456674	126456874	-	1	NA	NA	NA	6299	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.020000	0.532338	
mm_17889.1	chr2	35030279	35030479	-	1	NA	NA	NA	31062	NM_010406	15139	Mm.2168	NM_010406	ENSMUSG00000026874	Hc	C5|C5a|He	hemolytic complement	protein-coding	0.025000	0.517413	
mm_31573.1	chr4	57604622	57604822	+	1	NA	NA	NA	36474	NM_172868	242481	Mm.331630	NM_172868	ENSMUSG00000090053	Palm2	53-H12|B130066I24|R75368|pEN70	paralemmin 2	protein-coding	0.005000	0.462687	
mm_134318.1	chr16	15957642	15957842	-	1	NA	NA	NA	70456	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.010000	0.442786	
mm_146196.1	chr18	76241247	76241447	+	1	NA	NA	NA	-354	NM_010754	17126	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0.125000	0.781095	
mm_16381.1	chr2	178327455	178327655	+	1	NA	NA	NA	80103	NM_177191	320558	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding	0.035000	0.666667	
mm_63202.1	chr7	125753633	125753833	+	1	NA	NA	NA	45857	NM_001081022	233865	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	0.015000	0.472637	
mm_16023.1	chr2	167504063	167504263	+	1	NA	NA	NA	-11289	NM_170756	263876	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	0.065000	0.641791	
mm_119839.1	chr14	54431366	54431566	+	1	NA	NA	NA	-132	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.035000	0.532338	
mm_116215.1	chr13	32783934	32784134	-	1	NA	NA	NA	-2255	NM_001166030	238564	Mm.60041	NM_001166030	ENSMUSG00000044951	Mylk4	EG238564	myosin light chain kinase family, member 4	protein-coding	0.010000	0.472637	
mm_98688.1	chr11	96298713	96298913	+	1	NA	NA	NA	-358	NM_008269	15414	Mm.215	NM_008269	ENSMUSG00000000690	Hoxb6	Hox-2.2	homeobox B6	protein-coding	0.025000	0.522388	
mm_150460.1	chr19	38264696	38264896	+	1	NA	NA	NA	14	NM_020278	56839	Mm.298251	NM_020278	ENSMUSG00000067242	Lgi1	BB130740	leucine-rich repeat LGI family, member 1	protein-coding	0.015000	0.442786	
mm_162401.1	chr1	85326612	85326812	+	1	NA	NA	NA	-56146	NM_001037909	620078	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik|OTTMUSG00000029174	RIKEN cDNA C130026I21 gene	protein-coding	0.015000	0.542289	
mm_168145.1	chr10	34233425	34233625	-	1	NA	NA	NA	-25974	NM_172508	212898	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.005000	0.517413	
mm_133321.1	chr16	77838045	77838245	+	1	NA	NA	NA	191872	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0.005000	0.368159	
mm_146718.1	chr18	15063996	15064196	-	1	NA	NA	NA	-514	NM_001142731	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.085000	0.756219	
mm_84588.1	chr9	70035465	70035665	-	1	NA	NA	NA	2523	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.010000	0.552239	
mm_41948.1	chr5	105732138	105732338	+	1	NA	NA	NA	31428	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.085000	0.661692	
mm_73324.1	chr8	105276305	105276505	+	1	NA	NA	NA	-42	NM_030152	78688	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0.075000	0.681592	
mm_116122.1	chr13	28950674	28950874	-	1	NA	NA	NA	2908	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.040000	0.567164	
mm_39489.1	chr5	20950840	20951040	+	1	NA	NA	NA	-49	NR_030699	320770	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.045000	0.487562	67(ATCTTTAAAAGA,-,0.00),68(TCTTTAAAAGAC,+,0.00)
mm_47527.1	chr5	124172469	124172669	-	1	NA	NA	NA	14613	NM_001289472	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.015000	0.557214	
mm_155558.1	chrX	75382290	75382490	+	1	NA	NA	NA	-9	NM_026126	67391	Mm.126404	NM_026126	ENSMUSG00000031198	Fundc2	4833415N24Rik|DC44|HCBP6	FUN14 domain containing 2	protein-coding	0.075000	0.651741	
mm_63030.1	chr7	121065026	121065226	+	1	NA	NA	NA	9404	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.020000	0.447761	
mm_12544.1	chr2	72390303	72390503	+	1	NA	NA	NA	-85816	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.010000	0.373134	
mm_57620.1	chr6	128200544	128200744	-	1	NA	NA	NA	-16841	NR_077223	330427	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	0.085000	0.691542	
mm_124462.1	chr14	121145798	121145998	-	1	NA	NA	NA	110324	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.020000	0.502488	
mm_104127.1	chr11	86757428	86757628	-	1	NA	NA	NA	-36	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.115000	0.696517	
mm_12959.1	chr2	90459545	90459745	+	1	NA	NA	NA	19529	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.025000	0.472637	
mm_31394.1	chr4	48045052	48045252	+	1	NA	NA	NA	-153	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.080000	0.661692	
mm_130143.1	chr15	90915872	90916072	-	1	NA	NA	NA	-17496	NR_033583	20738	Mm.431547	NR_033583		Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.000000	0.557214	
mm_26941.1	chr3	20266169	20266369	-	1	NA	NA	NA	9464	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.010000	0.368159	
mm_21537.1	chr2	163690730	163690930	-	1	NA	NA	NA	-3207	NM_011106	18769	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.010000	0.517413	
mm_116772.1	chr13	52929559	52929759	-	1	NA	NA	NA	18	NM_016709	11992	Mm.252034	NM_016709	ENSMUSG00000021460	Auh	C77140|W91705	AU RNA binding protein/enoyl-coenzyme A hydratase	protein-coding	0.145000	0.746269	
mm_171934.1	chr5	64159897	64160097	+	1	NA	NA	NA	-263	NM_019636	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.080000	0.711443	
mm_27287.1	chr3	41555444	41555644	-	1	NA	NA	NA	-190	NM_001130184	269424	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.065000	0.631841	
mm_82116.1	chr9	123461897	123462097	+	1	NA	NA	NA	-16704	NM_013860	29806	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.055000	0.497512	
mm_99344.1	chr11	101552309	101552509	+	1	NA	NA	NA	-245	NM_001252222	17966	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	0.060000	0.512438	
mm_49845.1	chr6	38354613	38354813	+	1	NA	NA	NA	-110	NM_028421	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.060000	0.582090	
mm_83262.1	chr9	42461283	42461483	-	1	NA	NA	NA	10843	NM_173038	272589	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0.025000	0.482587	24(GGCTTTAAAACG,-,0.00),25(GCTTTAAAACGA,+,0.00)
mm_44729.1	chr5	31047926	31048126	-	1	NA	NA	NA	53	NM_177870	330064	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	0.065000	0.626866	
mm_31421.1	chr4	48051337	48051537	+	1	NA	NA	NA	191	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.045000	0.601990	
mm_9513.1	chr1	173741672	173741872	-	1	NA	NA	NA	37	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.010000	0.457711	
mm_107659.1	chr12	52790902	52791102	+	1	NA	NA	NA	91619	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.015000	0.432836	
mm_108608.1	chr12	85474628	85474828	+	1	NA	NA	NA	827	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.065000	0.537313	
mm_127465.1	chr15	101272641	101272841	+	1	NA	NA	NA	5895	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.040000	0.547264	
mm_10231.1	chr2	6386195	6386395	+	1	NA	NA	NA	33559	NM_181399	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.030000	0.467662	
mm_34071.1	chr4	138456932	138457132	+	1	NA	NA	NA	1884	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.015000	0.447761	
mm_126423.1	chr15	80572375	80572575	+	1	NA	NA	NA	-122	NM_001289442	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.025000	0.567164	
mm_77896.1	chr9	7348511	7348711	+	1	NA	NA	NA	1237	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.402985	
mm_163701.1	chr13	104178050	104178250	-	1	NA	NA	NA	316	NM_025879	66975	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	0.035000	0.542289	26(GGCGCTAAAAGG,-,0.00)
mm_3537.1	chr1	150393241	150393441	+	1	NA	NA	NA	-286	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.145000	0.751244	
mm_152485.1	chr19	11049831	11050031	-	1	NA	NA	NA	635	NR_102366	107350	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.010000	0.427861	13(CCTTTTAAAATA,+,0.00),64(TTCTCTAAAAGC,-,0.00)
mm_58078.1	chr6	136941400	136941600	-	1	NA	NA	NA	3	NM_001301305	11857	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	0.010000	0.487562	
mm_102368.1	chr11	58390174	58390374	-	1	NA	NA	NA	9628	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.030000	0.532338	
mm_71645.1	chr8	57652564	57652764	+	1	NA	NA	NA	391	NM_001167981	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0.170000	0.820896	
mm_96418.1	chr11	67255582	67255782	+	1	NA	NA	NA	17870	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.025000	0.502488	
mm_170267.1	chr18	20682882	20683082	-	1	NA	NA	NA	17732	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.040000	0.502488	
mm_149698.1	chr19	21276368	21276568	+	1	NA	NA	NA	4190	NM_009551	22682	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.000000	0.368159	22(GCTTTTATGGGA,+,0.00)
mm_144998.1	chr18	38297397	38297597	+	1	NA	NA	NA	692	NM_001164621	56736	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	0.025000	0.492537	
mm_10457.1	chr2	14293409	14293609	+	1	NA	NA	NA	32506	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.005000	0.417910	
mm_42701.1	chr5	119947584	119947784	+	1	NA	NA	NA	113021	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.030000	0.537313	
mm_19185.1	chr2	84407689	84407889	-	1	NA	NA	NA	17477	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.005000	0.378109	79(CCATTTAAACTG,+,0.00)
mm_102806.1	chr11	68871767	68871967	-	1	NA	NA	NA	-16686	NM_177060	320040	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	0.010000	0.562189	
mm_126823.1	chr15	88839380	88839580	+	1	NA	NA	NA	19834	NM_029720	76737	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0.025000	0.572139	-36(CGCTATAAATAG,-,0.00),-34(CTATAAATAGCC,+,0.00)
mm_54050.1	chr6	13838496	13838696	-	1	NA	NA	NA	1346	NM_001330666	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.040000	0.522388	
mm_3356.1	chr1	138172199	138172399	+	1	NA	NA	NA	2827	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.472637	
mm_134841.1	chr16	26371737	26371937	-	1	NA	NA	NA	2	NM_016674	12737	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding	0.065000	0.631841	
mm_50328.1	chr6	48395755	48395955	+	1	NA	NA	NA	269	NM_001347153	77827	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	0.105000	0.691542	
mm_51534.1	chr6	83189843	83190043	+	1	NA	NA	NA	3997	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.050000	0.587065	
mm_136401.1	chr16	93586478	93586678	-	1	NA	NA	NA	17237	NM_145482	224440	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	0.020000	0.547264	
mm_60646.1	chr7	44850304	44850504	+	1	NA	NA	NA	397	NM_001253920	67605	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	0.090000	0.661692	
mm_113979.1	chr13	52096615	52096815	+	1	NA	NA	NA	-26	NR_045061	74050	Mm.84860	NR_045061		4921525O09Rik	-	RIKEN cDNA 4921525O09 gene	ncRNA	0.020000	0.557214	
mm_78009.1	chr9	13414265	13414465	+	1	NA	NA	NA	-16996	NR_028271	18689	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.000000	0.487654	
mm_124572.1	chr14	124367806	124368006	-	1	NA	NA	NA	-175360	NM_010201	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.000000	0.368159	
mm_14800.1	chr2	145886311	145886511	+	1	NA	NA	NA	-16830	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.010000	0.348259	
mm_13341.1	chr2	102787538	102787738	+	1	NA	NA	NA	81200	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.005000	0.462687	
mm_76640.1	chr8	92357494	92357694	-	1	NA	NA	NA	-202	NM_018826	54352	Mm.101153	NM_018826	ENSMUSG00000031737	Irx5	-	Iroquois related homeobox 5 (Drosophila)	protein-coding	0.075000	0.651741	
mm_26042.1	chr3	135553064	135553264	+	1	NA	NA	NA	67553	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.020000	0.288557	
mm_168087.1	chr10	127620841	127621041	-	1	NA	NA	NA	207	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.055000	0.661692	
mm_94760.1	chr11	21149108	21149308	+	1	NA	NA	NA	57884	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.010000	0.273632	-59(TTGTCTAAAAGG,-,0.00)
mm_120124.1	chr14	60087408	60087608	+	1	NA	NA	NA	-674	NM_015803	50769	Mm.319599	NM_015803	ENSMUSG00000021983	Atp8a2	AI415030|Atpc1b|agil|wl	ATPase, aminophospholipid transporter-like, class I, type 8A, member 2	protein-coding	0.020000	0.472637	
mm_10678.1	chr2	21367746	21367946	+	1	NA	NA	NA	279	NM_001004761	241263	Mm.166647	NM_175706	ENSMUSG00000045967	Gpr158	5330427M13Rik|mKIAA1136	G protein-coupled receptor 158	protein-coding	0.065000	0.611940	
mm_166232.1	chr5	66962592	66962792	+	1	NA	NA	NA	-5724	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.010000	0.472637	
mm_162154.1	chrX	81458022	81458222	-	1	NA	NA	NA	0	NM_173435	245492	Mm.109633	NM_173435	ENSMUSG00000060673	4930595M18Rik	-	RIKEN cDNA 4930595M18 gene	protein-coding	0.025000	0.393035	
mm_107376.1	chr12	32953825	32954025	+	1	NA	NA	NA	-20	NM_013635	19027	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	0.105000	0.681592	
mm_164427.1	chr16	45382633	45382833	-	1	NA	NA	NA	26320	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.005000	0.378109	
mm_25152.1	chr3	102995705	102995905	+	1	NA	NA	NA	65	NM_025679	66641	Mm.33937	NM_025679	ENSMUSG00000027854	Sike1	2810005O12Rik|5730470L24Rik|AI450236|AI839862|Sike|Sikeb	suppressor of IKBKE 1	protein-coding	0.130000	0.661692	
mm_123816.1	chr14	70523976	70524176	-	1	NA	NA	NA	5	NM_011359	20389	Mm.24040	NM_011359	ENSMUSG00000022097	Sftpc	Bricd6|SP-C|SP5|SPC|Sftp-2|Sftp2|pro-SpC	surfactant associated protein C	protein-coding	0.005000	0.497512	
mm_120439.1	chr14	65837307	65837507	+	1	NA	NA	NA	105	NM_145944	67179	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	0.100000	0.626866	
mm_121688.1	chr14	13914401	13914601	-	1	NA	NA	NA	46812	NM_001285780	66231	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.005000	0.487562	
mm_129701.1	chr15	81697218	81697418	-	1	NA	NA	NA	-31	NM_001164320	214685	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0.020000	0.631841	
mm_95741.1	chr11	54691447	54691647	+	1	NA	NA	NA	95401	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.020000	0.537313	
mm_169680.1	chr15	69486595	69486795	+	1	NA	NA	NA	216162	NR_130983	75076		NR_130983		4930504C09Rik	-	RIKEN cDNA 4930504C09 gene	ncRNA	0.010000	0.313433	-35(TGGTATAAAAAG,-,0.00)
mm_24900.1	chr3	96181062	96181262	+	1	NA	NA	NA	-65	NM_022030	64051	Mm.491135	NM_022030	ENSMUSG00000038486	Sv2a	AI746429|mKIAA0736	synaptic vesicle glycoprotein 2 a	protein-coding	0.080000	0.741294	
mm_74384.1	chr8	128713152	128713352	+	1	NA	NA	NA	27598	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.005000	0.343284	
mm_94838.1	chr11	23665519	23665719	+	1	NA	NA	NA	-55	NM_028956	74467	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.100000	0.686567	
mm_47002.1	chr5	115348856	115349056	-	1	NA	NA	NA	-1	NM_007748	12861	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	0.125000	0.686567	
mm_109550.1	chr12	111712879	111713079	+	1	NA	NA	NA	-26	NM_001324482	70369	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.185000	0.815920	
mm_96937.1	chr11	70525908	70526108	+	1	NA	NA	NA	651	NM_008946	19175	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	0.015000	0.497512	
mm_138862.1	chr17	42876851	42877051	+	1	NA	NA	NA	-527	NM_009847	12488	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.035000	0.482587	
mm_145793.1	chr18	65245899	65246099	+	1	NA	NA	NA	-2862	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.005000	0.432836	
mm_24927.1	chr3	96557887	96558087	+	1	NA	NA	NA	30	NM_023719	56338	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.050000	0.557214	-60(GGCTATATAAGC,-,0.00)
mm_120327.1	chr14	63247953	63248153	+	1	NA	NA	NA	-2782	NM_001310610	14463	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0.020000	0.517413	
mm_61937.1	chr7	90176221	90176421	+	1	NA	NA	NA	46089	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.005000	0.412935	63(TCGTTTAAAAGC,-,0.00)
mm_21644.1	chr2	164333380	164333580	-	1	NA	NA	NA	715	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.035000	0.477612	-92(TGGTTTTAAAGG,-,0.00)
mm_50578.1	chr6	49052919	49053119	+	1	NA	NA	NA	16501	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.005000	0.457711	
mm_67911.1	chr7	99706636	99706836	-	1	NA	NA	NA	106	NM_001252530	101488	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0.000000	0.507463	
mm_91672.1	chr10	43221222	43221422	-	1	NA	NA	NA	-164	NM_027772	71365	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding	0.065000	0.616915	
mm_123250.1	chr14	61023801	61024001	-	1	NA	NA	NA	14086	NM_001164155	29820	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.005000	0.258706	
mm_121524.1	chr14	122107046	122107246	+	1	NA	NA	NA	64	NM_080556	68059	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	0.140000	0.731343	
mm_85587.1	chr9	107312968	107313168	-	1	NA	NA	NA	16409	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.005000	0.522388	-33(GTGCCTTTAAGG,-,0.00),-31(GCCTTTAAGGTG,+,0.00)
mm_89652.1	chr10	97479538	97479738	+	1	NA	NA	NA	138	NM_001190451	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.015000	0.487562	
mm_49515.1	chr6	29870480	29870680	+	1	NA	NA	NA	10984	NM_001171001	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.015000	0.437811	
mm_162061.1	chrX	9033378	9033578	+	1	NA	NA	NA	-8	NM_031261	83457	Mm.388703	NM_031261	ENSMUSG00000071815	Fthl17e	Fthl17	ferritin, heavy polypeptide-like 17, member E	protein-coding	0.025000	0.547264	
mm_112108.1	chr12	112786124	112786324	-	1	NA	NA	NA	-22751	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.020000	0.537313	
mm_46742.1	chr5	110839648	110839848	-	1	NA	NA	NA	29	NM_153571	100900	Mm.200231	NM_153571	ENSMUSG00000043510	Hscb	AI325508|AW049829|Hsc20	HscB iron-sulfur cluster co-chaperone	protein-coding	0.070000	0.631841	
mm_55800.1	chr6	82774336	82774536	-	1	NA	NA	NA	18	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.050000	0.601990	
mm_21201.1	chr2	155514728	155514928	-	1	NA	NA	NA	18	NM_144786	207182	Mm.41757	NM_144786	ENSMUSG00000027603	Ggt7	1110017C11Rik|6330563L03Rik|Ggtl3	gamma-glutamyltransferase 7	protein-coding	0.070000	0.686567	88(GACTATATGAGC,-,0.00)
mm_173080.1	chrX	141980638	141980838	+	1	NA	NA	NA	216198	NM_001007576	245650	Mm.208511	NM_001007576	ENSMUSG00000042282	Gucy2f	A930002I06|GC-F|GC2	guanylate cyclase 2f	protein-coding	0.015000	0.487562	
mm_90493.1	chr10	128033504	128033704	+	1	NA	NA	NA	-1742	NM_013608	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.005000	0.452736	
mm_83045.1	chr9	37433148	37433348	-	1	NA	NA	NA	-73	NM_001164767	19649	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0.070000	0.651741	
mm_162458.1	chr1	128569957	128570157	-	1	NA	NA	NA	22242	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.015000	0.472637	
mm_3673.1	chr1	153665540	153665740	+	1	NA	NA	NA	-33	NM_001347115	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding	0.025000	0.572139	
mm_56484.1	chr6	99096858	99097058	-	1	NA	NA	NA	-68660	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.020000	0.447761	
mm_98723.1	chr11	96332729	96332929	+	1	NA	NA	NA	9703	NM_001079869	15410	Mm.342481	NM_010458	ENSMUSG00000048763	Hoxb3	Hox-2.7	homeobox B3	protein-coding	0.110000	0.696517	
mm_59204.1	chr7	24507201	24507401	+	1	NA	NA	NA	214	NR_110958	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.140000	0.726368	
mm_93433.1	chr10	109010641	109010841	-	1	NA	NA	NA	234	NM_009306	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding	0.040000	0.676617	
mm_62196.1	chr7	97749702	97749902	+	1	NA	NA	NA	-11555	NM_175105	66333	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.020000	0.462687	
mm_61983.1	chr7	90972295	90972495	+	1	NA	NA	NA	-118391	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.338308	
mm_103487.1	chr11	76509245	76509445	-	1	NA	NA	NA	74	NM_198018	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.040000	0.572139	
mm_8101.1	chr1	135848778	135848978	-	1	NA	NA	NA	8017	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.050000	0.567164	
mm_67877.1	chr7	99223492	99223692	-	1	NA	NA	NA	15019	NM_177448	233549	Mm.208030	NM_177448	ENSMUSG00000052396	Mogat2	DGAT2L5|MGAT2|Mgat1l	monoacylglycerol O-acyltransferase 2	protein-coding	0.045000	0.577114	
mm_104324.1	chr11	93965844	93966044	-	1	NA	NA	NA	2577	NM_008704	18102	Mm.439702	NM_008704	ENSMUSG00000037601	Nme1	AL024257|NDPK-A|NM23-M1|NM23A	NME/NM23 nucleoside diphosphate kinase 1	protein-coding	0.035000	0.527363	-62(CGCTTGAAAAGG,-,0.00)
mm_170591.1	chr19	5802036	5802236	-	1	NA	NA	NA	536	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.055000	0.497512	
mm_26666.1	chr3	154711015	154711215	+	1	NA	NA	NA	-18	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.005000	0.527363	
mm_12910.1	chr2	84840526	84840726	+	1	NA	NA	NA	0	NM_001083809	72401	Mm.22716	NM_024497	ENSMUSG00000027075	Slc43a1	2610016F07Rik|AA986141|Lat3|PB39|Pov1|R00504	solute carrier family 43, member 1	protein-coding	0.090000	0.696517	
mm_46969.1	chr5	115158075	115158275	-	1	NA	NA	NA	1	NM_175403	109154	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0.085000	0.721393	
mm_35075.1	chr4	6990397	6990597	-	1	NA	NA	NA	226	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.035000	0.457711	
mm_151083.1	chr19	47622537	47622737	+	1	NA	NA	NA	42618	NM_001164639	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0.045000	0.592040	
mm_38916.1	chr4	150001138	150001338	-	1	NA	NA	NA	1998	NM_001291004	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.015000	0.601990	
mm_77530.1	chr8	123013193	123013393	-	1	NA	NA	NA	28991	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.015000	0.467662	
mm_173025.1	chrX	103980552	103980752	-	1	NA	NA	NA	632	NM_011276	19820	Mm.427762	NM_011276	ENSMUSG00000056537	Rlim	AL022832|AW743871|Ha1r|Rlim1|Rnf12	ring finger protein, LIM domain interacting	protein-coding	0.055000	0.547264	
mm_59555.1	chr7	28075199	28075399	+	1	NA	NA	NA	4063	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.035000	0.542289	
mm_155675.1	chrX	91155068	91155268	+	1	NA	NA	NA	0	NR_126535	101055749	Mm.300769	NR_126535	ENSMUSG00000059972	LOC101055749	-	Gm5941 pseudogene	pseudo	0.005000	0.492537	
mm_71657.1	chr8	60522597	60522797	+	1	NA	NA	NA	16573	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.000000	0.358209	-54(GCCCTTAAAGAG,-,0.00),-52(CCTTAAAGAGGA,+,0.00)
mm_58130.1	chr6	140620497	140620697	-	1	NA	NA	NA	-2066	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.005000	0.353234	
mm_107202.1	chr12	25381866	25382066	+	1	NA	NA	NA	252792	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.005000	0.482587	
mm_42855.1	chr5	122210211	122210411	+	1	NA	NA	NA	24	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.010000	0.572139	
mm_135146.1	chr16	35857233	35857433	-	1	NA	NA	NA	14049	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.030000	0.457711	
mm_24007.1	chr3	87376287	87376487	+	1	NA	NA	NA	0	NM_001310545	229499	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	0.015000	0.462687	
mm_119685.1	chr14	53428615	53428815	+	1	NA	NA	NA	825214	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.407960	
mm_20437.1	chr2	129306571	129306771	-	1	NA	NA	NA	3301	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.010000	0.442786	
mm_18602.1	chr2	67516402	67516602	-	1	NA	NA	NA	70500	NM_001024618	241431	Mm.261043	NM_001024618	ENSMUSG00000027022	Xirp2	2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2	xin actin-binding repeat containing 2	protein-coding	0.025000	0.442786	
mm_41198.1	chr5	88328114	88328314	+	1	NA	NA	NA	10902	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.015000	0.502488	
mm_58061.1	chr6	136857712	136857912	-	1	NA	NA	NA	-212	NM_026639	109978	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	0.020000	0.547264	
mm_43168.1	chr5	127257065	127257265	+	1	NA	NA	NA	15339	NM_175432	208213	Mm.444235	NM_175432	ENSMUSG00000034324	Tmem132c	2810482M11Rik|3230401P16|4632425D07Rik	transmembrane protein 132C	protein-coding	0.020000	0.447761	
mm_83814.1	chr9	53610248	53610448	-	1	NA	NA	NA	2	NM_144784	110446	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	0.110000	0.696517	
mm_58711.1	chr7	12978181	12978381	+	1	NA	NA	NA	433	NM_001168561	269870	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	0.055000	0.621891	
mm_161851.1	chr18	13971401	13971601	-	1	NA	NA	NA	1232	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.155000	0.706468	
mm_68266.1	chr7	105595444	105595644	-	1	NA	NA	NA	4572	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.030000	0.542289	
mm_98629.1	chr11	96076014	96076214	+	1	NA	NA	NA	-420	NM_007506	11951	Mm.258	NM_007506	ENSMUSG00000006057	Atp5g1	-	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9)	protein-coding	0.050000	0.532338	
mm_15159.1	chr2	154009656	154009856	+	1	NA	NA	NA	1480	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.005000	0.492537	
mm_130330.1	chr15	97719638	97719838	-	1	NA	NA	NA	1412	NM_008902	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.020000	0.532338	
mm_148401.1	chr19	3851732	3851932	+	1	NA	NA	NA	59	NR_073190	12660	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.155000	0.721393	
mm_123985.1	chr14	75593039	75593239	-	1	NA	NA	NA	-23	NM_001164139	67926	Mm.23361	NM_026457	ENSMUSG00000034913	Spert	1700086N05Rik|AI596460|Nurit	spermatid associated	protein-coding	0.005000	0.507463	
mm_9978.1	chr1	191225162	191225362	-	1	NA	NA	NA	-41929	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.010000	0.512438	
mm_132054.1	chr16	29579282	29579482	+	1	NA	NA	NA	48	NM_001199177	74143	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	0.070000	0.626866	
mm_35705.1	chr4	44167841	44168041	-	1	NA	NA	NA	342	NM_001038993	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.145000	0.771144	
mm_108229.1	chr12	77238754	77238954	+	1	NA	NA	NA	115	NR_045554	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.170000	0.800995	
mm_152431.1	chr19	10677933	10678133	-	1	NA	NA	NA	38	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.005000	0.517413	
mm_134404.1	chr16	17576580	17576780	-	1	NA	NA	NA	-9	NM_144852	224022	Mm.298878	NM_144852	ENSMUSG00000022756	Slc7a4	AI853530	solute carrier family 7 (cationic amino acid transporter, y+ system), member 4	protein-coding	0.085000	0.636816	
mm_88559.1	chr10	79506814	79507014	+	1	NA	NA	NA	24176	NR_105874	102465548		NR_105874	ENSMUSG00000098414	Mir6909	Gm27727|mmu-mir-6909	microRNA 6909	ncRNA	0.010000	0.477612	
mm_15175.1	chr2	154142783	154142983	+	1	NA	NA	NA	3	NM_011126	18843	Mm.268852	NM_011126	ENSMUSG00000027483	Bpifa1	LUNX|NASG|Plunc|SPLUNC1|SPURT	BPI fold containing family A, member 1	protein-coding	0.010000	0.487562	-35(TTCTATAAAAGC,-,0.00)
mm_160700.1	chr10	42568540	42568740	-	1	NA	NA	NA	14948	NM_152229	21907	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	0.005000	0.452736	-12(GTGTCTATAAGC,-,0.00)
mm_103727.1	chr11	79530510	79530710	-	1	NA	NA	NA	-1	NM_010161	14017	Mm.439665	NM_010161	ENSMUSG00000078771	Evi2a	AW491894|Evi-2|Evi2	ecotropic viral integration site 2a	protein-coding	0.015000	0.507463	
mm_83392.1	chr9	44648762	44648962	-	1	NA	NA	NA	-24371	NM_001277851	58866	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0.020000	0.562189	
mm_66075.1	chr7	30914933	30915133	-	1	NA	NA	NA	-111	NM_010758	17136	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	0.015000	0.626866	
mm_104864.1	chr11	99386541	99386741	-	1	NA	NA	NA	2723	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.055000	0.567164	
mm_147643.1	chr18	60269692	60269892	-	1	NA	NA	NA	3475	NM_001034859	225594	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	0.005000	0.407960	
mm_65981.1	chr7	30445450	30445650	-	1	NA	NA	NA	32	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.130000	0.815920	
mm_98435.1	chr11	94937904	94938104	+	1	NA	NA	NA	1780	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.045000	0.552239	
mm_45367.1	chr5	66018907	66019107	-	1	NA	NA	NA	-14722	NR_027961	231253	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.030000	0.338308	
mm_40829.1	chr5	72914184	72914384	+	1	NA	NA	NA	-78	NM_001113423	75991	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0.115000	0.756219	
mm_97046.1	chr11	72435420	72435620	+	1	NA	NA	NA	-6	NM_027819	71522	Mm.23336	NM_027819	ENSMUSG00000040471	Ggt6	9030405D14Rik|AI427679|AW490214	gamma-glutamyltransferase 6	protein-coding	0.025000	0.601990	-96(ACCTTTATAAGA,-,0.00)
mm_78044.1	chr9	14500599	14500799	+	1	NA	NA	NA	80	NM_023153	66070	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	0.065000	0.592040	
mm_13466.1	chr2	105675591	105675791	+	1	NA	NA	NA	-53	NM_001244200	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.035000	0.547264	
mm_33440.1	chr4	130308529	130308729	+	1	NA	NA	NA	-149	NM_010174	14077	Mm.388886	NM_010174	ENSMUSG00000028773	Fabp3	Fabph-1|Fabph-4|Fabph1|Fabph4|H-FABP|Mdgi	fatty acid binding protein 3, muscle and heart	protein-coding	0.070000	0.656716	77(GGCTATTTAAAG,-,0.00),79(CTATTTAAAGAG,+,0.00)
mm_31853.1	chr4	76450798	76450998	+	1	NA	NA	NA	-1172612	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.035000	0.567164	
mm_38626.1	chr4	142084142	142084342	-	1	NA	NA	NA	-56	NR_027137	100038693	Mm.402714	NR_027137	ENSMUSG00000073728	Tmem51os1	ENSMUSG00000073728|Gm10565|Tmem51as1	Tmem51 opposite strand 1	ncRNA	0.115000	0.781095	
mm_164440.1	chr16	49792506	49792706	-	1	NA	NA	NA	-63048	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.010000	0.467662	-61(GAGTTTTAAAAG,-,0.00),-60(AGTTTTAAAAGC,-,0.00),-59(GTTTTAAAAGCC,+,0.00)
mm_61668.1	chr7	80779643	80779843	+	1	NA	NA	NA	23588	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.025000	0.582090	64(GACCAGAAAAGG,-,0.00)
mm_98899.1	chr11	97999457	97999657	+	1	NA	NA	NA	-3384	NM_207231	217151	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.015000	0.487562	
mm_96703.1	chr11	69654906	69655106	+	1	NA	NA	NA	-31	NM_009235	20670	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0.015000	0.572139	-4(GCCTTTTAGAGG,-,0.00),-3(CCTTTTAGAGGC,+,0.00)
mm_171858.1	chr5	21645965	21646165	+	1	NA	NA	NA	81	NM_026034	67211	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	0.070000	0.701493	
mm_123659.1	chr14	69243984	69244184	-	1	NA	NA	NA	41019	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.010000	0.323383	
mm_100339.1	chr11	118393287	118393487	+	1	NA	NA	NA	8544	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.015000	0.507463	
mm_90344.1	chr10	127141076	127141276	+	1	NA	NA	NA	-20016	NM_001171026	216440	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.025000	0.557214	
mm_97582.1	chr11	78944716	78944916	+	1	NA	NA	NA	19525	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.020000	0.587065	
mm_61906.1	chr7	90131091	90131291	+	1	NA	NA	NA	959	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.020000	0.407960	
mm_8887.1	chr1	162886380	162886580	-	1	NA	NA	NA	12232	NM_018881	55990	Mm.10929	NM_018881	ENSMUSG00000040170	Fmo2	2310008D08Rik|2310042I22Rik|AW107733	flavin containing monooxygenase 2	protein-coding	0.020000	0.427861	
mm_11450.1	chr2	32083782	32083982	+	1	NA	NA	NA	-177	NM_175511	241303	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.100000	0.651741	
mm_82742.1	chr9	26791842	26792042	-	1	NA	NA	NA	14475	NM_153803	244757	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0.010000	0.552239	
mm_97527.1	chr11	78502084	78502284	+	1	NA	NA	NA	-1329	NM_008759	18292	Mm.134360	NM_008759	ENSMUSG00000001103	Sebox	OG9|Og9x	SEBOX homeobox	protein-coding	0.030000	0.522388	
mm_120065.1	chr14	56919651	56919851	+	1	NA	NA	NA	31956	NM_029498	76007	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.005000	0.268657	
mm_121346.1	chr14	116529283	116529483	+	1	NA	NA	NA	-395914	NM_001079844	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.010000	0.432836	
mm_100744.1	chr11	4118684	4118884	-	1	NA	NA	NA	-55	NM_144520	67815	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	0.090000	0.681592	-34(TCCTTTAAGAGG,-,0.00),-33(CCTTTAAGAGGC,+,0.00)
mm_96619.1	chr11	69103569	69103769	+	1	NA	NA	NA	3511	NM_001159367	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.030000	0.616915	
mm_134727.1	chr16	22898842	22899042	-	1	NA	NA	NA	-4556	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.040000	0.606965	
mm_141758.1	chr17	34264751	34264951	-	1	NA	NA	NA	1624	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.115000	0.626866	
mm_127468.1	chr15	101272681	101272881	+	1	NA	NA	NA	5935	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.035000	0.527363	
mm_16096.1	chr2	168978172	168978372	+	1	NA	NA	NA	3	NR_040326	75508	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.030000	0.542289	
mm_152877.1	chr19	24518384	24518584	-	1	NA	NA	NA	37343	NM_008846	18719	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	0.000000	0.462687	
mm_12625.1	chr2	74697920	74698120	+	1	NA	NA	NA	257	NM_013555	15438	Mm.26544	NM_013555	ENSMUSG00000043342	Hoxd9	Hox-4.4|Hox-5.2	homeobox D9	protein-coding	0.110000	0.661692	
mm_163428.1	chr12	82307621	82307821	+	1	NA	NA	NA	-3628	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.010000	0.417910	
mm_97521.1	chr11	78500378	78500578	+	1	NA	NA	NA	1358	NM_011707	22370	Mm.3667	NM_011707	ENSMUSG00000017344	Vtn	AI256434|Vn	vitronectin	protein-coding	0.040000	0.557214	
mm_97654.1	chr11	79520119	79520319	+	1	NA	NA	NA	3543	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.000000	0.452736	
mm_10912.1	chr2	25372617	25372817	+	1	NA	NA	NA	682	NM_001081085	72080	Mm.250293	NM_001081085	ENSMUSG00000026955	Sapcd2	2010317E24Rik|6030458L21Rik|AL033337|ang	suppressor APC domain containing 2	protein-coding	0.130000	0.716418	
mm_23946.1	chr3	84814521	84814721	+	1	NA	NA	NA	-956	NM_001177773	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.095000	0.681592	
mm_52193.1	chr6	99877514	99877714	+	1	NA	NA	NA	-151222	NM_001170419	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.005000	0.363184	-46(CAGTTTATAAAG,-,0.00),-44(GTTTATAAAGGG,+,0.00),-44(GTTTATAAAGGG,-,0.00),6(GGATTTAAATGC,-,0.00),56(CCTTAAAAAAAC,+,0.00)
mm_7691.1	chr1	128712756	128712956	-	1	NA	NA	NA	-120557	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.005000	0.562189	
mm_115697.1	chr13	14063281	14063481	-	1	NA	NA	NA	107	NM_001331119	14593	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	0.060000	0.601990	
mm_56512.1	chr6	99401949	99402149	-	1	NA	NA	NA	33296	NM_053202	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.025000	0.507463	54(TGACATAAAAGC,-,0.00)
mm_111762.1	chr12	103989861	103990061	-	1	NA	NA	NA	-4	NM_001166350	380780	Mm.201338	NM_199314	ENSMUSG00000063232	Serpina11	Gm895	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11	protein-coding	0.015000	0.492537	-94(CACTTTAAAAAA,-,0.00)
mm_68833.1	chr7	126200387	126200587	-	1	NA	NA	NA	12	NM_001311143	74204	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|mKIAA0370	exportin 6	protein-coding	0.105000	0.731343	
mm_26326.1	chr3	142539022	142539222	+	1	NA	NA	NA	8786	NM_145545	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.005000	0.388060	88(CTCCTTATAAAG,-,0.00)
mm_152789.1	chr19	21465090	21465290	-	1	NA	NA	NA	7471	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.010000	0.373134	
mm_143357.1	chr17	67242976	67243176	-	1	NA	NA	NA	111383	NM_008984	19274	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.010000	0.343284	
mm_119018.1	chr14	30008924	30009124	+	1	NA	NA	NA	24	NM_001136240	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.110000	0.731343	
mm_136790.1	chr17	11329215	11329415	+	1	NA	NA	NA	488956	NM_016694	50873	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.010000	0.482587	
mm_121643.1	chr14	8666119	8666319	-	1	NA	NA	NA	71	NM_028934	74430	Mm.271901	NM_028934	ENSMUSG00000021747	4930452B06Rik	4933406L09Rik|AI854000	RIKEN cDNA 4930452B06 gene	protein-coding	0.135000	0.746269	
mm_112491.1	chr13	6555314	6555514	+	1	NA	NA	NA	7257	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.060000	0.472637	
mm_125102.1	chr15	27741096	27741296	+	1	NA	NA	NA	-59654	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.015000	0.512438	
mm_127038.1	chr15	96638479	96638679	+	1	NA	NA	NA	3383	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.025000	0.388060	
mm_35412.1	chr4	34806851	34807051	-	1	NA	NA	NA	-28585	NM_025471	66291	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	0.000000	0.378109	
mm_58100.1	chr6	137570653	137570853	-	1	NA	NA	NA	256	NM_001271595	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.030000	0.502488	
mm_168054.1	chrY	90812577	90812777	+	1	NA	NA	NA	26729	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.000000	0.447761	
mm_37355.1	chr4	120287625	120287825	-	1	NA	NA	NA	-464	NM_194060	329934	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	0.155000	0.796020	
mm_49454.1	chr6	29396517	29396717	+	1	NA	NA	NA	33	NM_001347073	232664	Mm.251303	NM_145574	ENSMUSG00000029769	Ccdc136	4921511K06Rik|BC006583	coiled-coil domain containing 136	protein-coding	0.125000	0.810945	
mm_87732.1	chr10	60132804	60133004	+	1	NA	NA	NA	6128	NR_105871	102465546		NR_105871	ENSMUSG00000105468	Mir6906	mmu-mir-6906	microRNA 6906	ncRNA	0.015000	0.512438	
mm_118580.1	chr14	19779503	19779703	+	1	NA	NA	NA	28346	NM_008695	18074	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.020000	0.507463	
mm_136068.1	chr16	84735675	84735875	-	1	NA	NA	NA	-473	NM_017404	27393	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	0.060000	0.482587	
mm_141590.1	chr17	32420833	32421033	-	1	NA	NA	NA	42	NM_021319	57757	Mm.86752	NM_021319	ENSMUSG00000079563	Pglyrp2	C730002N09Rik|PGRP-L|Pglyrpl|tagL	peptidoglycan recognition protein 2	protein-coding	0.025000	0.582090	
mm_148155.1	chr18	77565194	77565394	-	1	NA	NA	NA	-158	NM_001164504	225743	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0.150000	0.776119	
mm_165217.1	chr2	38499905	38500105	+	1	NA	NA	NA	-11692	NM_021606	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.005000	0.492537	
mm_67990.1	chr7	100863261	100863461	-	1	NA	NA	NA	52	NM_177073	320100	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.145000	0.771144	
mm_148702.1	chr19	5800957	5801157	+	1	NA	NA	NA	1615	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.050000	0.572139	
mm_160052.1	chr7	3676631	3676831	-	1	NA	NA	NA	822	NM_181820	353499	Mm.360398	NM_181820	ENSMUSG00000019734	Tmc4	-	transmembrane channel-like gene family 4	protein-coding	0.040000	0.567164	
mm_72915.1	chr8	91070045	91070245	+	1	NA	NA	NA	88	NM_001282000	19651	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	retinoblastoma-like 2	protein-coding	0.080000	0.686567	
mm_103601.1	chr11	78404479	78404679	-	1	NA	NA	NA	10094	NR_003282	790911	Mm.457257	NR_003282	ENSMUSG00000085747	Slc13a2os	Gm11194|OTTMUSG00000000132	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand	ncRNA	0.020000	0.572139	
mm_118694.1	chr14	22140077	22140277	+	1	NA	NA	NA	120465	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.010000	0.457711	
mm_29896.1	chr3	131343399	131343599	-	1	NA	NA	NA	1424	NM_028943	74442	Mm.273360	NM_028943	ENSMUSG00000050931	Sgms2	4933405A16Rik|5133401H06Rik|AI854299	sphingomyelin synthase 2	protein-coding	0.030000	0.557214	
mm_93646.1	chr10	117360867	117361067	-	1	NA	NA	NA	16006	NM_001013391	432508	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.025000	0.567164	
mm_21729.1	chr2	164743019	164743219	-	1	NA	NA	NA	148	NM_027961	71856	Mm.330770	NM_027961	ENSMUSG00000076434	Wfdc3	1700015L13Rik|1700127F16Rik	WAP four-disulfide core domain 3	protein-coding	0.010000	0.512438	
mm_47871.1	chr5	134657458	134657658	-	1	NA	NA	NA	-18149	NM_033561	22384	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0.025000	0.552239	
mm_48558.1	chr5	143154600	143154800	-	1	NA	NA	NA	11051	NR_040426	100042605	Mm.332809	NR_040424	ENSMUSG00000104529	Rbakdn	Gm3925	RB-associated KRAB zinc finger downstream neighbor (non-protein coding)	ncRNA	0.050000	0.517413	-41(AACTTTAAATGG,-,0.00)
mm_100480.1	chr11	120232810	120233010	+	1	NA	NA	NA	-37	NM_001347621	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.090000	0.636816	
mm_171847.1	chr5	16903943	16904143	+	1	NA	NA	NA	350142	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.065000	0.656716	
mm_18931.1	chr2	76748667	76748867	-	1	NA	NA	NA	73452	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.020000	0.477612	
mm_83994.1	chr9	57443465	57443665	-	1	NA	NA	NA	-3451	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.005000	0.502488	
mm_85012.1	chr9	87731047	87731247	-	1	NA	NA	NA	113	NM_023814	76365	Mm.158789	NM_023814	ENSMUSG00000032419	Tbx18	2810012F10Rik|2810404D13Rik	T-box18	protein-coding	0.030000	0.492537	
mm_60741.1	chr7	45447790	45447990	+	1	NA	NA	NA	11996	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.030000	0.582090	
mm_94731.1	chr11	20742204	20742404	+	1	NA	NA	NA	-748	NM_181411	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.020000	0.393035	
mm_168635.1	chr1	183205748	183205948	-	1	NA	NA	NA	15681	NM_001278218	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0.025000	0.457711	
mm_133194.1	chr16	72788301	72788501	+	1	NA	NA	NA	125252	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.020000	0.457711	
mm_162022.1	chr19	46036049	46036249	-	1	NA	NA	NA	3472	NM_010697	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.020000	0.532338	
mm_106966.1	chr12	8934836	8935036	+	1	NA	NA	NA	-12993	NM_010770	17182	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0.010000	0.407960	64(TGCTATTTAAAC,-,0.00)
mm_116342.1	chr13	38503483	38503683	-	1	NA	NA	NA	24331	NM_001289599	105245	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	0.010000	0.522388	63(CTCTCTAAAAAG,-,0.00)
mm_97367.1	chr11	77518471	77518671	+	1	NA	NA	NA	3454	NM_026185	67477	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	0.035000	0.601990	
mm_17208.1	chr2	25470337	25470537	-	1	NA	NA	NA	-688	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.010000	0.562189	
mm_71309.1	chr8	43180358	43180558	+	1	NA	NA	NA	-2664	NM_001160412	622117	Mm.390031	NM_001160412	ENSMUSG00000091490	Triml2	EG622117|Tu4	tripartite motif family-like 2	protein-coding	0.040000	0.467662	
mm_162736.1	chr10	54160606	54160806	-	1	NA	NA	NA	84784	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.015000	0.467662	
mm_2807.1	chr1	130865678	130865878	+	1	NA	NA	NA	1	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.010000	0.462687	
mm_6219.1	chr1	66863196	66863396	-	1	NA	NA	NA	13	NM_007381	11363	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.160000	0.815920	
mm_41188.1	chr5	88327771	88327971	+	1	NA	NA	NA	10559	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.000000	0.378109	-100(GGATTTAAAAGA,-,0.00)
mm_62941.1	chr7	119476844	119477044	+	1	NA	NA	NA	2318	NM_009470	22242	Mm.10826	NM_009470	ENSMUSG00000030963	Umod	THP|Urehd1|urehr4	uromodulin	protein-coding	0.055000	0.601990	
mm_16514.1	chr2	181365465	181365665	+	1	NA	NA	NA	142	NM_001048148	229007	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	0.090000	0.666667	
mm_16561.1	chr2	3332332	3332532	-	1	NA	NA	NA	196	NM_001013376	227522	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0.100000	0.691542	
mm_68494.1	chr7	111076086	111076286	-	1	NA	NA	NA	6844	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.015000	0.388060	-32(GATTATAAAAAG,-,0.00)
mm_115572.1	chr13	11545301	11545501	-	1	NA	NA	NA	23349	NR_027813	664793	Mm.410565	NR_027813		Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo	0.005000	0.308458	
mm_117142.1	chr13	60941845	60942045	-	1	NA	NA	NA	-10	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding	0.005000	0.472637	
mm_106208.1	chr11	116851165	116851365	-	1	NA	NA	NA	1829	NM_011358	20382	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0.000000	0.333333	
mm_5959.1	chr1	56971655	56971855	-	1	NA	NA	NA	286	NR_024325	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0.045000	0.532338	
mm_122016.1	chr14	27379330	27379530	-	1	NA	NA	NA	18041	NM_001289688	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.005000	0.497512	-38(GCTTTTAAGGAG,+,0.00)
mm_147535.1	chr18	53417924	53418124	-	1	NA	NA	NA	-17	NM_008908	19038	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding	0.115000	0.716418	
mm_93913.1	chr10	127060182	127060382	-	1	NA	NA	NA	-98	NM_001033262	216438	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	0.125000	0.800995	
mm_131949.1	chr16	24393451	24393651	+	1	NA	NA	NA	104	NR_037954	68841	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	0.090000	0.701493	
mm_101216.1	chr11	20089543	20089743	-	1	NA	NA	NA	23308	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.000000	0.472637	
mm_36792.1	chr4	103114210	103114410	-	1	NA	NA	NA	-11	NM_146254	242584	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	0.105000	0.711443	
mm_102909.1	chr11	69560100	69560300	-	1	NA	NA	NA	37	NM_007911	13643	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	0.070000	0.681592	
mm_134761.1	chr16	23237811	23238011	-	1	NA	NA	NA	11890	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.005000	0.552239	
mm_80528.1	chr9	80164906	80165106	+	1	NA	NA	NA	-28	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.090000	0.696517	
mm_124014.1	chr14	76237473	76237673	-	1	NA	NA	NA	126682	NM_013745	27275	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.060000	0.552239	
mm_33616.1	chr4	132619925	132620125	+	1	NA	NA	NA	-19021	NM_210071	14050	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0.005000	0.517413	
mm_132477.1	chr16	36717640	36717840	+	1	NA	NA	NA	23762	NM_001285791	106347	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.005000	0.527363	
mm_14011.1	chr2	122147588	122147788	+	1	NA	NA	NA	1	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.075000	0.587065	-36(AACTATATAAGA,-,0.00)
mm_129057.1	chr15	75566803	75567003	-	1	NA	NA	NA	-47	NM_001135688	23934	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	0.140000	0.781095	
mm_169722.1	chr15	79075081	79075281	+	1	NA	NA	NA	-42	NM_145139	223691	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	0.080000	0.616915	
mm_154206.1	chr19	59075434	59075634	-	1	NA	NA	NA	535	NM_175172	71653	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Kiaa1598|Shootin1|mKIAA1598	shootin 1	protein-coding	0.065000	0.646766	-6(CCTTTTATCCCC,+,0.00)
mm_46834.1	chr5	113280489	113280689	-	1	NA	NA	NA	12	NM_001309528	52850	Mm.200203	NM_172718	ENSMUSG00000042216	Sgsm1	2410098H20Rik|AA408781|D5Bwg1524e|E130107M15|NuIP|Rutbc2	small G protein signaling modulator 1	protein-coding	0.020000	0.522388	
mm_23330.1	chr3	54156065	54156265	+	1	NA	NA	NA	108	NM_001253682	22066	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0.070000	0.582090	
mm_156877.1	chrX	166238690	166238890	+	1	NA	NA	NA	-153	NM_001177961	14758	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	0.045000	0.587065	
mm_55914.1	chr6	83775513	83775713	-	1	NA	NA	NA	199	NM_009357	21766	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	0.095000	0.671642	
mm_32677.1	chr4	115781097	115781297	+	1	NA	NA	NA	-163	NM_029196	75173	Mm.331798	NM_029196	ENSMUSG00000044556	Tex38	4930544O15Rik|Theg4	testis expressed 38	protein-coding	0.010000	0.512438	
mm_79872.1	chr9	65141087	65141287	+	1	NA	NA	NA	-2	NM_008988	19289	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0.135000	0.786070	
mm_123214.1	chr14	59440733	59440933	-	1	NA	NA	NA	47	NM_001320725	107303348		NM_001320725		Setdb2-phf11c	-	Setdb2-Phf11c readthrough	protein-coding	0.115000	0.701493	
mm_138404.1	chr17	35059143	35059343	+	1	NA	NA	NA	208	NM_016765	51793	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	0.030000	0.582090	
mm_53494.1	chr6	135214224	135214424	+	1	NA	NA	NA	16337	NM_028982	74525	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|Kiaa1467|mKIAA1467	family with sequence similarity 234, member B	protein-coding	0.015000	0.497512	-65(CCCTCTTAGAGG,-,0.00),-64(CCTCTTAGAGGA,+,0.00),52(CTTTATTAAAGC,-,0.00)
mm_22528.1	chr3	7660192	7660392	+	1	NA	NA	NA	-46532	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.005000	0.363184	
mm_55144.1	chr6	51464405	51464605	-	1	NA	NA	NA	5389	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.005000	0.417910	
mm_147572.1	chr18	55767772	55767972	-	1	NA	NA	NA	-664260	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.005000	0.333333	
mm_117197.1	chr13	63815040	63815240	-	1	NA	NA	NA	-180	NM_001013608	76251	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	0.085000	0.592040	
mm_27157.1	chr3	33110691	33110891	-	1	NA	NA	NA	-27731	NM_001289505	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.015000	0.417910	
mm_66628.1	chr7	45493620	45493820	-	1	NA	NA	NA	-4924	NM_027903	71755	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	0.010000	0.611940	
mm_72871.1	chr8	88678897	88679097	+	1	NA	NA	NA	-18031	NM_001128170	74256	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	0.000000	0.288557	
mm_71598.1	chr8	54955163	54955363	+	1	NA	NA	NA	535	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.015000	0.432836	60(GCTTTAAAACAG,+,0.00)
mm_93555.1	chr10	116297807	116298007	-	1	NA	NA	NA	-3467	NM_029928	19263	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0.025000	0.442786	-48(GTCTTTTAAAAG,-,0.00),-47(TCTTTTAAAAGC,+,0.00),-47(TCTTTTAAAAGC,-,0.00),-46(CTTTTAAAAGCT,+,0.00)
mm_117058.1	chr13	58402400	58402600	-	1	NA	NA	NA	12	NM_001301345	15387	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.115000	0.656716	
mm_129729.1	chr15	82027755	82027955	-	1	NA	NA	NA	11486	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.020000	0.507463	
mm_143890.1	chr17	84466079	84466279	-	1	NA	NA	NA	29	NM_183021	240174	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.125000	0.661692	
mm_36550.1	chr4	86691345	86691545	-	1	NA	NA	NA	-21386	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.015000	0.482587	
mm_9390.1	chr1	172216733	172216933	-	1	NA	NA	NA	3062	NM_009813	12372	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.025000	0.472637	
mm_133992.1	chr16	4679580	4679780	-	1	NA	NA	NA	40	NM_030205	78885	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0.045000	0.597015	
mm_87747.1	chr10	60266988	60267188	+	1	NA	NA	NA	-10540	NM_001146123	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.527363	
mm_74933.1	chr8	25769488	25769688	-	1	NA	NA	NA	-15308	NM_028102	72108	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	0.015000	0.452736	
mm_46304.1	chr5	100562665	100562865	-	1	NA	NA	NA	9440	NM_139198	231507	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.030000	0.517413	
mm_62231.1	chr7	98563066	98563266	+	1	NA	NA	NA	68944	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.015000	0.542289	
mm_38986.1	chr4	151057801	151058001	-	1	NA	NA	NA	52	NM_009498	22319	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	0.145000	0.726368	
mm_135541.1	chr16	49772678	49772878	-	1	NA	NA	NA	73484	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.000000	0.502488	
mm_162999.1	chr11	32024586	32024786	+	1	NA	NA	NA	23409	NM_001290681	18197	Mm.3304	NM_008741	ENSMUSG00000020297	Nsg2	-	neuron specific gene family member 2	protein-coding	0.015000	0.417910	2(TGGTAGAAAAGG,-,0.00),23(GTGTTTAAAGGC,-,0.00)
mm_107762.1	chr12	59080891	59081091	+	1	NA	NA	NA	14072	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.055000	0.557214	
mm_26791.1	chr3	9778699	9778899	-	1	NA	NA	NA	54880	NM_053182	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.025000	0.393035	-87(ACATCTAAAAGG,-,0.00)
mm_74676.1	chr8	13974835	13975035	-	1	NA	NA	NA	-158	NM_173744	72148	Mm.5727	NM_173744	ENSMUSG00000050052	Tdrp	2610019F03Rik	testis development related protein	protein-coding	0.055000	0.641791	
mm_55227.1	chr6	52234788	52234988	-	1	NA	NA	NA	51	NM_008263	15395	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0.075000	0.572139	
mm_105383.1	chr11	103344585	103344785	-	1	NA	NA	NA	17	NM_133715	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.025000	0.621891	
mm_12582.1	chr2	73312581	73312781	+	1	NA	NA	NA	29	NM_029022	74616	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	0.125000	0.681592	
mm_58673.1	chr7	10636703	10636903	+	1	NA	NA	NA	3216	NM_134228	171262	Mm.222634	NM_134228	ENSMUSG00000045340	Vmn1r70	V1rd2|V1rl1	vomeronasal 1 receptor 70	protein-coding	0.000000	0.343284	
mm_168215.1	chr10	75932403	75932603	-	1	NA	NA	NA	-1	NM_008606	17385	Mm.4561	NM_008606	ENSMUSG00000000901	Mmp11	MMP-11|SL-3|ST3|Stmy3	matrix metallopeptidase 11	protein-coding	0.120000	0.751244	
mm_164021.1	chr14	75179656	75179856	-	1	NA	NA	NA	43331	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.040000	0.437811	
mm_132508.1	chr16	36962048	36962248	+	1	NA	NA	NA	16988	NM_001037321	207215	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0.025000	0.582090	
mm_132628.1	chr16	38902305	38902505	+	1	NA	NA	NA	60	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.145000	0.815920	
mm_143839.1	chr17	84121496	84121696	-	1	NA	NA	NA	42936	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.015000	0.502488	
mm_89788.1	chr10	102158909	102159109	+	1	NA	NA	NA	-70	NM_001162369	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.030000	0.472637	
mm_127055.1	chr15	96710274	96710474	+	1	NA	NA	NA	-10676	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.040000	0.398010	
mm_143758.1	chr17	81606024	81606224	-	1	NA	NA	NA	132263	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.363184	
mm_61780.1	chr7	83658731	83658931	+	1	NA	NA	NA	26814	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.000000	0.462687	
mm_52555.1	chr6	115995311	115995511	+	1	NA	NA	NA	-406	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.050000	0.592040	
mm_60740.1	chr7	45447772	45447972	+	1	NA	NA	NA	12014	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.025000	0.577114	
mm_78504.1	chr9	32745300	32745500	+	1	NA	NA	NA	49358	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.020000	0.487562	
mm_104648.1	chr11	97573917	97574117	-	1	NA	NA	NA	1109	NM_018873	56013	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.065000	0.746269	
mm_18404.1	chr2	60312152	60312352	-	1	NA	NA	NA	-27768	NM_001290660	66205	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.005000	0.363184	-42(AGCCCTTAAAGC,-,0.00),-41(GCCCTTAAAGCC,+,0.00)
mm_91847.1	chr10	58536353	58536553	-	1	NA	NA	NA	38516	NM_001162956	76138	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.015000	0.567164	
mm_40908.1	chr5	75575998	75576198	+	1	NA	NA	NA	1107	NM_021099	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	KIT proto-oncogene receptor tyrosine kinase	protein-coding	0.030000	0.517413	
mm_92764.1	chr10	81092559	81092759	-	1	NA	NA	NA	6213	NM_145365	208677	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	0.030000	0.592040	
mm_35244.1	chr4	19877447	19877647	-	1	NA	NA	NA	45019	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.005000	0.328358	89(CTTTAAATAGGA,+,0.00)
mm_141335.1	chr17	28507447	28507647	-	1	NA	NA	NA	-21398	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.005000	0.592040	
mm_61480.1	chr7	75669585	75669785	+	1	NA	NA	NA	-178653	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.020000	0.467662	
mm_23945.1	chr3	84666229	84666429	+	1	NA	NA	NA	137	NM_177260	320782	Mm.107370	NM_177260	ENSMUSG00000056498	Tmem154	9930117H01Rik	transmembrane protein 154	protein-coding	0.055000	0.601990	
mm_9894.1	chr1	186705221	186705421	-	1	NA	NA	NA	668	NM_009367	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.155000	0.736318	
mm_93437.1	chr10	109638751	109638951	-	1	NA	NA	NA	361368	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.020000	0.567164	
mm_100382.1	chr11	119307667	119307867	+	1	NA	NA	NA	-7020	NM_130886	170720	Mm.130832	NM_130886	ENSMUSG00000013483	Card14	Bimp2|CARMA2	caspase recruitment domain family, member 14	protein-coding	0.005000	0.542289	-34(TTGTATATAAGG,-,0.00)
mm_32820.1	chr4	117445885	117446085	+	1	NA	NA	NA	51067	NM_025739	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.015000	0.552239	
mm_46223.1	chr5	98943784	98943984	-	1	NA	NA	NA	89469	NM_001310677	110075	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0.015000	0.482587	
mm_71686.1	chr8	61224167	61224367	+	1	NA	NA	NA	96	NM_021506	59009	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	0.170000	0.791045	
mm_53142.1	chr6	125231170	125231370	+	1	NA	NA	NA	-6	NR_015604	78668	Mm.10626	NR_015604	ENSMUSG00000030337	E130112N10Rik	5830448L21Rik|9530059J11Rik	RIKEN cDNA E130112N10 gene	ncRNA	0.015000	0.552239	
mm_2910.1	chr1	132007557	132007757	+	1	NA	NA	NA	52	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.150000	0.711443	
mm_49618.1	chr6	30751813	30752013	+	1	NA	NA	NA	10614	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.015000	0.467662	
mm_12448.1	chr2	71129688	71129888	+	1	NA	NA	NA	11734	NM_028593	73649	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	0.020000	0.527363	
mm_161759.1	chr17	35517109	35517309	+	1	NA	NA	NA	93	NM_146248	240084	Mm.49544	NM_146248	ENSMUSG00000040312	Cchcr1	Hcr	coiled-coil alpha-helical rod protein 1	protein-coding	0.080000	0.671642	
mm_164979.1	chr19	8839186	8839386	-	1	NA	NA	NA	-40	NM_010316	14704	Mm.329700	NM_010316	ENSMUSG00000071658	Gng3	-	guanine nucleotide binding protein (G protein), gamma 3	protein-coding	0.005000	0.542289	
mm_152677.1	chr19	15924465	15924665	-	1	NA	NA	NA	57	NM_001205339	107272	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0.070000	0.616915	
mm_101260.1	chr11	20898635	20898835	-	1	NA	NA	NA	-67627	NM_173752	216551	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.015000	0.522388	13(TCTTATAAAGGA,+,0.00)
mm_144341.1	chr18	14847907	14848107	+	1	NA	NA	NA	64762	NM_001100449	72504	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	0.000000	0.308458	
mm_101067.1	chr11	11451102	11451302	-	1	NA	NA	NA	11217	NM_015785	53604	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	0.000000	0.288557	
mm_94775.1	chr11	21264900	21265100	+	1	NA	NA	NA	25968	NM_001290628	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.000000	0.248756	
mm_169142.1	chr13	62125594	62125794	+	1	NA	NA	NA	-4196	NM_001039239	630579	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 80	protein-coding	0.025000	0.507463	
mm_19899.1	chr2	114053439	114053639	-	1	NA	NA	NA	-664	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.005000	0.492537	
mm_110734.1	chr12	69790175	69790375	-	1	NA	NA	NA	-69	NR_033573	74724	Mm.399254	NR_033573		4930512B01Rik	4930472D12Rik	RIKEN cDNA 4930512B01 gene	ncRNA	0.050000	0.497512	66(ACCTTTAAAAAC,-,0.00)
mm_53616.1	chr6	140041456	140041656	+	1	NA	NA	NA	31	NM_007605	12344	Mm.12817	NM_007605	ENSMUSG00000041791	Capza3	510-4|Cappa3|Gsg3|Tex8|repro32	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding	0.015000	0.462687	
mm_101007.1	chr11	8492309	8492509	-	1	NA	NA	NA	172126	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.020000	0.572139	
mm_40085.1	chr5	34530550	34530750	+	1	NA	NA	NA	4866	NM_011893	24055	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.010000	0.457711	
mm_86325.1	chr9	123056574	123056774	-	1	NA	NA	NA	21933	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.030000	0.512438	
mm_51641.1	chr6	86017123	86017323	+	1	NA	NA	NA	32	NM_012013	26910	Mm.8024	NM_012013	ENSMUSG00000030001	Figla	FIGalpha|bHLHc8	folliculogenesis specific basic helix-loop-helix	protein-coding	0.050000	0.676617	
mm_77337.1	chr8	119558642	119558842	-	1	NA	NA	NA	19	NM_001167910	56453	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	0.165000	0.741294	
mm_26656.1	chr3	154597101	154597301	+	1	NA	NA	NA	-103	NM_172474	209584	Mm.347513	NM_172474	ENSMUSG00000047583	Tyw3	5230400J09Rik	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	protein-coding	0.055000	0.597015	
mm_74673.1	chr8	13890167	13890367	-	1	NA	NA	NA	4	NM_025556	66423	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	0.155000	0.805970	
mm_103886.1	chr11	83574495	83574695	-	1	NA	NA	NA	4041	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.005000	0.407960	
mm_10513.1	chr2	16356368	16356568	+	1	NA	NA	NA	164	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.070000	0.616915	
mm_155291.1	chrX	61183711	61183911	+	1	NA	NA	NA	1747	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.005000	0.393035	
mm_106692.1	chr12	3365295	3365495	+	1	NA	NA	NA	263	NM_008445	16570	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.075000	0.646766	
mm_67212.1	chr7	74399793	74399993	-	1	NA	NA	NA	154887	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.015000	0.552239	
mm_112104.1	chr12	112785471	112785671	-	1	NA	NA	NA	-23404	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.020000	0.487562	
mm_160570.1	chr9	57080981	57081181	+	1	NA	NA	NA	4705	NM_011378	20466	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	0.015000	0.378109	
mm_57977.1	chr6	135724646	135724846	-	1	NA	NA	NA	65833	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	0.000000	0.427861	
mm_164181.1	chr15	76269897	76270097	+	1	NA	NA	NA	-158	NR_045747	100038659	Mm.448549	NR_045747		Mirt2	ENSMUSG00000075583|Gm10872|Gm24562	myocardial infraction associated transcript 2	ncRNA	0.020000	0.442786	
mm_16422.1	chr2	180257285	180257485	+	1	NA	NA	NA	6	NM_025587	66481	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0.080000	0.616915	
mm_95962.1	chr11	58883958	58884158	+	1	NA	NA	NA	16818	NM_172403	69944	Mm.32118	NM_172403	ENSMUSG00000020491	2810021J22Rik	AI449137	RIKEN cDNA 2810021J22 gene	protein-coding	0.015000	0.522388	
mm_126678.1	chr15	84672764	84672964	+	1	NA	NA	NA	-8134	NM_146061	109270	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0.000000	0.582090	-33(CCATTTATAACC,+,0.00)
mm_12831.1	chr2	80635147	80635347	+	1	NA	NA	NA	-3565	NM_027091	69482	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	0.030000	0.462687	-47(GCTTATATAACA,+,0.00)
mm_32667.1	chr4	115532522	115532722	+	1	NA	NA	NA	14335	NM_010011	13117	Mm.10742	NM_010011	ENSMUSG00000066072	Cyp4a10	AI647584|Cyp4a|D4Rp1|Msp-3|RP1	cytochrome P450, family 4, subfamily a, polypeptide 10	protein-coding	0.015000	0.512438	
mm_97345.1	chr11	77462482	77462682	+	1	NA	NA	NA	-1331	NM_139129	216961	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.115000	0.731343	
mm_148706.1	chr19	5801805	5802005	+	1	NA	NA	NA	767	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.378109	
mm_122477.1	chr14	45657893	45658093	-	1	NA	NA	NA	60	NR_039593	100628600		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	0.175000	0.736318	
mm_12111.1	chr2	61593018	61593218	+	1	NA	NA	NA	21	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.075000	0.626866	
mm_171540.1	chr4	146971878	146972078	+	1	NA	NA	NA	-49872	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.020000	0.537313	
mm_125201.1	chr15	32944261	32944461	+	1	NA	NA	NA	23638	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0.005000	0.383085	-93(GGCTCTAAGAGA,-,0.00)
mm_29264.1	chr3	107332918	107333118	-	1	NA	NA	NA	271	NM_001045807	229700	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.100000	0.606965	
mm_50127.1	chr6	41539147	41539347	+	1	NA	NA	NA	17471	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.000000	0.497512	
mm_57769.1	chr6	129236934	129237134	-	1	NA	NA	NA	1011	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.000000	0.442786	
mm_169579.1	chr15	22714146	22714346	-	1	NA	NA	NA	738	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding	0.035000	0.487562	
mm_86077.1	chr9	114781271	114781471	-	1	NA	NA	NA	622	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.090000	0.661692	
mm_43437.1	chr5	136089856	136090056	+	1	NA	NA	NA	6040	NM_001039103	54153	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.000000	0.512438	
mm_9626.1	chr1	176797218	176797418	-	1	NA	NA	NA	9806	NM_001099637	545389	Mm.269991	NM_001024722	ENSMUSG00000057335	Cep170	4933426L22Rik|A330004A13Rik|AI195353	centrosomal protein 170	protein-coding	0.000000	0.298507	
mm_161746.1	chr17	33890476	33890676	-	1	NA	NA	NA	57	NM_001195298	100502766	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	0.080000	0.621891	
mm_15903.1	chr2	164968137	164968337	+	1	NA	NA	NA	249	NM_020333	57138	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	0.115000	0.676617	
mm_19431.1	chr2	91947385	91947585	-	1	NA	NA	NA	-2555	NR_105965	102465604		NR_105965	ENSMUSG00000098651	Mir6999	Gm27673|mmu-mir-6999	microRNA 6999	ncRNA	0.010000	0.532338	
mm_38487.1	chr4	140810548	140810748	-	1	NA	NA	NA	0	NM_011060	18601	Mm.20851	NM_011060	ENSMUSG00000025328	Padi3	AI507004|Pad3|Pdi3|mKIAA4171	peptidyl arginine deiminase, type III	protein-coding	0.025000	0.597015	-35(GTACTTTAAAGG,-,0.00),-34(TACTTTAAAGGC,-,0.00)
mm_83285.1	chr9	43106088	43106288	-	1	NA	NA	NA	-470	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0.095000	0.636816	
mm_46244.1	chr5	99240721	99240921	-	1	NA	NA	NA	12106	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.030000	0.532338	
mm_99836.1	chr11	109011788	109011988	+	1	NA	NA	NA	91539	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.090000	0.641791	
mm_85330.1	chr9	102354530	102354730	-	1	NA	NA	NA	63	NM_001168296	270190	Mm.22897	NM_173447	ENSMUSG00000032537	Ephb1	9330129L11|AW488255|C130099E04Rik|Cek6|ENSMUSG00000074119|Elk|Elkh|Hek6|Net	Eph receptor B1	protein-coding	0.070000	0.641791	
mm_92530.1	chr10	79533674	79533874	-	1	NA	NA	NA	13	NM_001302442	50784	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	0.090000	0.731343	
mm_162040.1	chr19	56874214	56874414	+	1	NA	NA	NA	-102	NM_172840	240675	Mm.129534	NM_172840	ENSMUSG00000025082	Vwa2	Amaco	von Willebrand factor A domain containing 2	protein-coding	0.110000	0.746269	
mm_33462.1	chr4	130792654	130792854	+	1	NA	NA	NA	217	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.130000	0.761194	
mm_65395.1	chr7	25121425	25121625	-	1	NA	NA	NA	10935	NM_011138	18987	Mm.76683	NM_011138	ENSMUSG00000008496	Pou2f2	Oct-2|Oct2a|Oct2b|Oct2c|Oct2d|Otf-2|Otf2	POU domain, class 2, transcription factor 2	protein-coding	0.025000	0.616915	
mm_127871.1	chr15	8444132	8444332	-	1	NA	NA	NA	231	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.095000	0.631841	
mm_95093.1	chr11	33963125	33963325	+	1	NA	NA	NA	212	NM_031169	16533	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	0.020000	0.611940	
mm_82538.1	chr9	20814896	20815096	-	1	NA	NA	NA	71	NM_001317388	53867	Mm.334994	NM_016919	ENSMUSG00000004098	Col5a3	-	collagen, type V, alpha 3	protein-coding	0.045000	0.676617	
mm_82519.1	chr9	20642395	20642595	-	1	NA	NA	NA	311	NM_013911	30843	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding	0.050000	0.597015	
mm_130908.1	chr15	102513388	102513588	-	1	NA	NA	NA	3516	NM_001163643	26404	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0.005000	0.398010	
mm_27944.1	chr3	79628785	79628985	-	1	NA	NA	NA	-118	NM_025794	66841	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	0.045000	0.572139	
mm_63196.1	chr7	125607548	125607748	+	1	NA	NA	NA	4219	NM_021887	60504	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.000000	0.512438	
mm_68515.1	chr7	111735862	111736062	-	1	NA	NA	NA	44015	NM_173739	233733	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	0.000000	0.427861	-47(TTCTTTAAAAGC,-,0.00),-46(TCTTTAAAAGCT,+,0.00)
mm_45842.1	chr5	87697068	87697268	-	1	NA	NA	NA	2257	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.000000	0.308458	
mm_88660.1	chr10	79997382	79997582	+	1	NA	NA	NA	-126	NM_001347081	27403	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.050000	0.537313	
mm_88550.1	chr10	78591936	78592136	+	1	NA	NA	NA	-72	NM_027875	71709	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	0.065000	0.606965	
mm_138376.1	chr17	35016432	35016632	+	1	NA	NA	NA	-47	NM_138582	27762	Mm.56895	NM_138582	ENSMUSG00000007030	Vwa7	C6orf27|D17H6S56E-3|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding	0.045000	0.661692	
mm_7760.1	chr1	131138050	131138250	-	1	NA	NA	NA	84	NM_145508	226419	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.145000	0.761194	
mm_169317.1	chr14	112432532	112432732	+	1	NA	NA	NA	411202	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA	0.045000	0.636816	
mm_91445.1	chr10	33933300	33933500	-	1	NA	NA	NA	17812	NM_028287	72580	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	0.005000	0.293532	
mm_172764.1	chr8	92716902	92717102	-	1	NA	NA	NA	42713	NM_001301137	64379	Mm.137247	NM_022428	ENSMUSG00000031738	Irx6	-	Iroquois related homeobox 6 (Drosophila)	protein-coding	0.025000	0.417910	
mm_61359.1	chr7	68618340	68618540	+	1	NA	NA	NA	-16	NR_003648	384639	Mm.261760	NM_001013781		Gm5334	EG384639	tetraspanin 7 pseudogene	pseudo	0.005000	0.507463	
mm_13696.1	chr2	117121294	117121494	+	1	NA	NA	NA	323	NM_033524	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.180000	0.805970	
mm_167600.1	chr9	50616912	50617112	-	1	NA	NA	NA	-309	NM_028300	72614	Mm.147232	NM_028300	ENSMUSG00000000167	Pih1d2	2700059L22Rik	PIH1 domain containing 2	protein-coding	0.100000	0.711443	
mm_135191.1	chr16	36367443	36367643	-	1	NA	NA	NA	27	NM_001082546	100034684	Mm.383561	NM_001082546	ENSMUSG00000071561	BC100530	-	cDNA sequence BC100530	protein-coding	0.020000	0.467662	-38(CCTTTAAAACCC,+,0.00)
mm_56523.1	chr6	99520961	99521161	-	1	NA	NA	NA	-68	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.030000	0.557214	
mm_32989.1	chr4	120338297	120338497	+	1	NA	NA	NA	-51136	NM_194060	329934	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	0.010000	0.457711	
mm_65390.1	chr7	25092455	25092655	-	1	NA	NA	NA	4620	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.015000	0.417910	
mm_119152.1	chr14	31496320	31496520	+	1	NA	NA	NA	1341	NM_028932	74427	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	0.010000	0.477612	
mm_119409.1	chr14	44988563	44988763	+	1	NA	NA	NA	552	NM_008964	19217	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.030000	0.616915	
mm_119488.1	chr14	47375257	47375457	+	1	NA	NA	NA	1497	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.005000	0.547264	-99(GGGTCTTAAAGC,-,0.00)
mm_160467.1	chr8	111094532	111094732	+	1	NA	NA	NA	-113	NM_198308	319518	Mm.28350	NM_198308	ENSMUSG00000033624	Pdpr	4930402E16Rik|AU018056|mKIAA1990	pyruvate dehydrogenase phosphatase regulatory subunit	protein-coding	0.175000	0.781095	
mm_159237.1	chr2	145822525	145822725	+	1	NA	NA	NA	36509	NM_028724	74030	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.020000	0.447761	87(AGGTTTAAAGGG,-,0.00)
mm_35466.1	chr4	40781784	40781984	-	1	NA	NA	NA	-23999	NM_021535	74255	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.020000	0.472637	
mm_101112.1	chr11	11945450	11945650	-	1	NA	NA	NA	-47406	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.010000	0.467662	
mm_139687.1	chr17	57420464	57420664	+	1	NA	NA	NA	61878	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.422886	40(CCTTTAAAACCT,+,0.00)
mm_68899.1	chr7	126450084	126450284	-	1	NA	NA	NA	12889	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.065000	0.601990	
mm_27880.1	chr3	79173077	79173277	-	1	NA	NA	NA	-27302	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.045000	0.457711	
mm_138353.1	chr17	34972619	34972819	+	1	NA	NA	NA	16	NM_013558	15482	Mm.14287	NM_013558	ENSMUSG00000007033	Hspa1l	Hsc70t|Msh5	heat shock protein 1-like	protein-coding	0.050000	0.626866	
mm_137434.1	chr17	26442055	26442255	+	1	NA	NA	NA	27190	NM_001081656	240055	Mm.133211	NM_001081656	ENSMUSG00000034413	Neurl1b	C230078M08Rik|EG240055	neuralized E3 ubiquitin protein ligase 1B	protein-coding	0.010000	0.532338	
mm_98271.1	chr11	89008023	89008223	+	1	NA	NA	NA	8720	NM_009546	217069	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.010000	0.407960	
mm_123460.1	chr14	65833759	65833959	-	1	NA	NA	NA	110	NM_028039	71988	Mm.249280	NM_028039	ENSMUSG00000022034	Esco2	2410004I17Rik|D030072L07Rik	establishment of sister chromatid cohesion N-acetyltransferase 2	protein-coding	0.090000	0.611940	
mm_40282.1	chr5	43233127	43233327	+	1	NA	NA	NA	-236	NM_175937	231207	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.185000	0.796020	
mm_126789.1	chr15	86325140	86325340	+	1	NA	NA	NA	110781	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.015000	0.512438	
mm_21566.1	chr2	164200013	164200213	-	1	NA	NA	NA	4	NM_183271	68221	Mm.142735	NM_183271	ENSMUSG00000051769	Wfdc15a	1700049M11Rik|Wfdcl1	WAP four-disulfide core domain 15A	protein-coding	0.040000	0.562189	
mm_84847.1	chr9	78442997	78443197	-	1	NA	NA	NA	140	NR_125721	214763	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0.125000	0.582090	
mm_65105.1	chr7	19304415	19304615	-	1	NA	NA	NA	5530	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.025000	0.626866	
mm_154837.1	chrX	19167362	19167562	+	1	NA	NA	NA	-20491	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.015000	0.447761	-5(GCTTTAAAACAA,+,0.00)
mm_162180.1	chrX	102802863	102803063	+	1	NA	NA	NA	0	NM_001142691	71083	Mm.50914	NM_001142691	ENSMUSG00000067562	Dmrtc1c1	4933424F23Rik|Dmrt8.3|Dmrtc1c	DMRT-like family C1c1	protein-coding	0.030000	0.621891	
mm_64317.1	chr7	141866674	141866874	+	1	NA	NA	NA	27702	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.015000	0.532338	
mm_133905.1	chr16	97548650	97548850	+	1	NA	NA	NA	12667	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.005000	0.328358	
mm_32759.1	chr4	116687356	116687556	+	1	NA	NA	NA	-1434	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.000000	0.368159	
mm_91224.1	chr10	22058554	22058754	-	1	NA	NA	NA	9425	NM_053264	114671	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	0.060000	0.676617	
mm_104457.1	chr11	95060847	95061047	-	1	NA	NA	NA	8251	NM_001306071	16400	Mm.57035	NM_013565	ENSMUSG00000001507	Itga3	AA407068|CD49C|GAPB3	integrin alpha 3	protein-coding	0.000000	0.402985	-1(ATCTATAAAGGG,-,0.00)
mm_76373.1	chr8	84800315	84800515	-	1	NA	NA	NA	-77	NM_001081982	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.155000	0.741294	
mm_60119.1	chr7	35981053	35981253	+	1	NA	NA	NA	-178164	NM_177739	668501	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	0.030000	0.562189	
mm_93635.1	chr10	117282225	117282425	-	1	NA	NA	NA	-53	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.005000	0.472637	23(GCTTAAATAGCA,+,0.00)
mm_133456.1	chr16	89083923	89084123	+	1	NA	NA	NA	-20021	NM_001276278	68637	Mm.384089	NM_001276278	ENSMUSG00000068073	1110025L11Rik	-	RIKEN cDNA 1110025L11 gene	protein-coding	0.010000	0.447761	-33(GTGTATAAAAGG,-,0.00)
mm_130260.1	chr15	96642710	96642910	-	1	NA	NA	NA	103	NM_001166458	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.110000	0.731343	
mm_57791.1	chr6	129274313	129274513	-	1	NA	NA	NA	956	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.020000	0.378109	
mm_98780.1	chr11	96807697	96807897	+	1	NA	NA	NA	-9641	NR_033523	629750	Mm.390396	NR_033523		Gm11517	OTTMUSG00000001634	ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene	pseudo	0.000000	0.338308	
mm_62592.1	chr7	105640961	105641161	+	1	NA	NA	NA	521	NM_019502	14356	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0.075000	0.636816	
mm_101685.1	chr11	40694795	40694995	-	1	NA	NA	NA	308	NM_001199274	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.070000	0.567164	-79(TAATTTAAAAGG,-,0.00)
mm_31187.1	chr4	43555823	43556023	+	1	NA	NA	NA	6660	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.030000	0.537313	89(GCCTATTTAAAC,-,0.00)
mm_15074.1	chr2	153117519	153117719	+	1	NA	NA	NA	9151	NM_010407	15162	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.010000	0.402985	
mm_152822.1	chr19	23136274	23136474	-	1	NA	NA	NA	-4852	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.060000	0.532338	
mm_130181.1	chr15	93398525	93398725	-	1	NA	NA	NA	161	NM_001285863	223828	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.040000	0.552239	
mm_158792.1	chrX	167229002	167229202	-	1	NA	NA	NA	-19884	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.000000	0.373134	
mm_105888.1	chr11	114933645	114933845	-	1	NA	NA	NA	641	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.015000	0.557214	
mm_118987.1	chr14	28504649	28504849	+	1	NA	NA	NA	-724	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.075000	0.676617	
mm_23840.1	chr3	82358109	82358309	+	1	NA	NA	NA	137	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0.075000	0.676617	
mm_35644.1	chr4	43522639	43522839	-	1	NA	NA	NA	815	NM_009416	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.030000	0.577114	
mm_55760.1	chr6	78466230	78466430	-	1	NA	NA	NA	2544	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.005000	0.393035	
mm_59722.1	chr7	28785275	28785475	+	1	NA	NA	NA	-3594	NM_177158	320435	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0.005000	0.601990	
mm_131036.1	chr16	3872277	3872477	+	1	NA	NA	NA	-3	NM_001033159	71063	Mm.379190	NM_001033159	ENSMUSG00000039789	Zfp597	4933407K12Rik|AI462383|AI666357	zinc finger protein 597	protein-coding	0.085000	0.666667	
mm_171178.1	chr3	35754050	35754250	+	1	NA	NA	NA	12	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.135000	0.766169	
mm_79691.1	chr9	60527146	60527346	+	1	NA	NA	NA	-16211	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.010000	0.492537	
mm_22080.1	chr2	168765210	168765410	-	1	NA	NA	NA	1891	NM_201395	99377	Mm.434054	NM_175303	ENSMUSG00000027547	Sall4	5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20	sal-like 4 (Drosophila)	protein-coding	0.050000	0.572139	
mm_99993.1	chr11	114765301	114765501	+	1	NA	NA	NA	12	NM_001102615	286942	Mm.308713	NM_001102615	ENSMUSG00000010021	Kif19a	Kif19	kinesin family member 19A	protein-coding	0.090000	0.701493	
mm_130500.1	chr15	98831237	98831437	-	1	NA	NA	NA	171	NM_016781	19082	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.110000	0.776119	
mm_153004.1	chr19	30175287	30175487	-	1	NA	NA	NA	54	NM_138595	104174	Mm.274852	NM_138595	ENSMUSG00000024827	Gldc	D030049L12Rik|D19Wsu57e	glycine decarboxylase	protein-coding	0.070000	0.646766	
mm_126433.1	chr15	80597643	80597843	+	1	NA	NA	NA	25146	NM_001289442	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.010000	0.422886	
mm_26413.1	chr3	142608507	142608707	+	1	NA	NA	NA	-12056	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.000000	0.323383	
mm_87615.1	chr10	57794280	57794480	+	1	NA	NA	NA	-164	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.020000	0.462687	-5(CCTTTTCAAGTA,+,0.00)
mm_66409.1	chr7	44480084	44480284	-	1	NA	NA	NA	-4333	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.457711	
mm_76892.1	chr8	105700998	105701198	-	1	NA	NA	NA	-3	NM_001012638	497652	Mm.12964	NM_001012638	ENSMUSG00000038000	Acd	-	adrenocortical dysplasia	protein-coding	0.090000	0.666667	
mm_42018.1	chr5	108268855	108269055	+	1	NA	NA	NA	58	NM_026106	13486	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0.115000	0.686567	
mm_127666.1	chr15	102625493	102625693	+	1	NA	NA	NA	-129	NM_001310066	223922	Mm.208714	NM_146065	ENSMUSG00000052414	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	0.095000	0.671642	
mm_59712.1	chr7	28756048	28756248	+	1	NA	NA	NA	-26	NM_001195091	100504112	Mm.379654	NM_001195091	ENSMUSG00000096257	Ccer2	EG624918|Gm6537	coiled-coil glutamate-rich protein 2	protein-coding	0.050000	0.676617	
mm_55910.1	chr6	83762407	83762607	-	1	NA	NA	NA	1	NR_105027	67934	Mm.126190	NR_105027	ENSMUSG00000099354	1700124L16Rik	-	RIKEN cDNA 1700124L16 gene	ncRNA	0.010000	0.477612	
mm_109123.1	chr12	105706033	105706233	+	1	NA	NA	NA	151	NM_030187	78801	Mm.36006	NM_030187	ENSMUSG00000041323	Ak7	4930502N02Rik|AK 7	adenylate kinase 7	protein-coding	0.030000	0.537313	
mm_105039.1	chr11	100584621	100584821	-	1	NA	NA	NA	8830	NM_001146318	12799	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.000000	0.462687	
mm_25937.1	chr3	131466607	131466807	+	1	NA	NA	NA	-98061	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.010000	0.562189	
mm_52339.1	chr6	110663325	110663525	+	1	NA	NA	NA	17827	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.005000	0.348259	-61(GGTTTTAAAAAC,-,0.00)
mm_102510.1	chr11	60777133	60777333	-	1	NA	NA	NA	132	NM_009410	21975	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0.055000	0.552239	
mm_131924.1	chr16	23320770	23320970	+	1	NA	NA	NA	30400	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.025000	0.487562	
mm_37809.1	chr4	130914036	130914236	-	1	NA	NA	NA	802	NM_010686	16792	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3	lysosomal-associated protein transmembrane 5	protein-coding	0.020000	0.577114	
mm_81633.1	chr9	110880072	110880272	+	1	NA	NA	NA	-2	NM_146228	235633	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0.150000	0.756219	
mm_110473.1	chr12	51829997	51830197	-	1	NA	NA	NA	-561	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.065000	0.537313	
mm_150458.1	chr19	38264538	38264738	+	1	NA	NA	NA	-144	NM_020278	56839	Mm.298251	NM_020278	ENSMUSG00000067242	Lgi1	BB130740	leucine-rich repeat LGI family, member 1	protein-coding	0.040000	0.547264	
mm_106516.1	chr11	120549612	120549812	-	1	NA	NA	NA	15	NM_001033231	192173	Mm.262300	NM_001033231	ENSMUSG00000061111	Fam195b	Mcrip1	family with sequence similarity 195, member B	protein-coding	0.200000	0.791045	
mm_138802.1	chr17	38639348	38639548	+	1	NA	NA	NA	1	NM_001177586	100126768	Mm.471528	NM_001177586	ENSMUSG00000092342	Esp31	Gm20516	exocrine gland secreted peptide 31	protein-coding	0.000000	0.368159	-34(TGCTTTAAATAG,-,0.00),-32(CTTTAAATAGCA,+,0.00)
mm_112710.1	chr13	18957837	18958037	+	1	NA	NA	NA	9586	NM_001289546	218038	Mm.101650	NM_175007	ENSMUSG00000021314	Amph	-	amphiphysin	protein-coding	0.025000	0.393035	
mm_55029.1	chr6	48940082	48940282	-	1	NA	NA	NA	10286	NM_001081273	69761	Mm.333053	NM_001081273	ENSMUSG00000029813	1600015I10Rik	AI429442|Doxl1	RIKEN cDNA 1600015I10 gene	protein-coding	0.040000	0.502488	0(CCTTTTCTAGGG,+,0.00)
mm_109329.1	chr12	109565833	109566033	+	1	NA	NA	NA	2241	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.000000	0.532338	
mm_62058.1	chr7	92447508	92447708	+	1	NA	NA	NA	-113541	NM_025515	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.015000	0.517413	
mm_134715.1	chr16	22895180	22895380	-	1	NA	NA	NA	-894	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.045000	0.497512	
mm_170325.1	chr18	42200555	42200755	+	1	NA	NA	NA	-3946	NM_027072	69401	Mm.34841	NM_027072	ENSMUSG00000059455	Plac8l1	1700009N18Rik|1700015M15Rik	PLAC8-like 1	protein-coding	0.030000	0.393035	
mm_47892.1	chr5	134721462	134721662	-	1	NA	NA	NA	25761	NM_007925	13717	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	0.030000	0.577114	
mm_102858.1	chr11	69399229	69399429	-	1	NA	NA	NA	-1095	NM_025915	67020	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.020000	0.328358	
mm_135929.1	chr16	72823566	72823766	-	1	NA	NA	NA	160517	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.015000	0.427861	
mm_76854.1	chr8	105349129	105349329	-	1	NA	NA	NA	971	NM_001081332	277973	Mm.334766	NM_001081332	ENSMUSG00000014786	Slc9a5	Gm696	solute carrier family 9 (sodium/hydrogen exchanger), member 5	protein-coding	0.090000	0.676617	
mm_106986.1	chr12	10369876	10370076	+	1	NA	NA	NA	5	NM_001310582	70881	Mm.272843	NM_027588	ENSMUSG00000020622	Nt5c1b	4921514H13Rik|AIRP|CN-IB|cN1B	5'-nucleotidase, cytosolic IB	protein-coding	0.015000	0.383085	
mm_125920.1	chr15	76190378	76190578	+	1	NA	NA	NA	5232	NM_201394	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.040000	0.651741	
mm_126350.1	chr15	79910984	79911184	+	1	NA	NA	NA	16061	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.005000	0.407960	57(GTGCATTAAAGA,-,0.00)
mm_81161.1	chr9	107296772	107296972	+	1	NA	NA	NA	213	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.070000	0.671642	
mm_62741.1	chr7	111028913	111029113	+	1	NA	NA	NA	62	NM_009431	22083	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0.090000	0.666667	
mm_22469.1	chr3	4797251	4797451	+	1	NA	NA	NA	-1357	NR_045272	100503859	Mm.75172	NR_045272	ENSMUSG00000098659	1110015O18Rik	-	RIKEN cDNA 1110015O18 gene	ncRNA	0.015000	0.462687	
mm_89882.1	chr10	108333174	108333374	+	1	NA	NA	NA	1085	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.115000	0.736318	
mm_127418.1	chr15	101260601	101260801	+	1	NA	NA	NA	-6145	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.035000	0.597015	-60(TGCTATATAAAC,-,0.00)
mm_140915.1	chr17	24169581	24169781	-	1	NA	NA	NA	-252	NM_009729	11984	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0.100000	0.641791	
mm_63022.1	chr7	121034550	121034750	+	1	NA	NA	NA	205	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.140000	0.781095	
mm_154463.1	chrM	3222	3422	-	1	NA	NA	NA	NA	NA									0.035000	0.442786	
mm_90145.1	chr10	118141432	118141632	+	1	NA	NA	NA	-255	NM_001162904	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.050000	0.592040	-98(TCCTTTATGGAC,+,0.00)
mm_60570.1	chr7	44481433	44481633	+	1	NA	NA	NA	-2984	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.462687	
mm_19579.1	chr2	101649320	101649520	-	1	NA	NA	NA	112	NM_009019	19373	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0.020000	0.457711	
mm_125907.1	chr15	75996670	75996870	+	1	NA	NA	NA	3001	NM_177922	332110	Mm.40843	NM_177922	ENSMUSG00000063704	Mapk15	BC048082	mitogen-activated protein kinase 15	protein-coding	0.015000	0.567164	
mm_68198.1	chr7	104379999	104380199	-	1	NA	NA	NA	-21453	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.005000	0.368159	
mm_68148.1	chr7	102249451	102249651	-	1	NA	NA	NA	567	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.020000	0.567164	
mm_7448.1	chr1	120258756	120258956	-	1	NA	NA	NA	6424	NM_133186	68428	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.035000	0.577114	
mm_166388.1	chr5	134139466	134139666	-	1	NA	NA	NA	37201	NM_033572	94254	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0.010000	0.527363	
mm_116952.1	chr13	56135697	56135897	-	1	NA	NA	NA	-247	NM_001159513	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.055000	0.631841	
mm_72465.1	chr8	83332529	83332729	+	1	NA	NA	NA	-143	NM_178736	244548	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	0.115000	0.696517	
mm_1444.1	chr1	67228143	67228343	+	1	NA	NA	NA	105216	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.000000	0.447761	
mm_19545.1	chr2	98662813	98663013	-	1	NA	NA	NA	1195256	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.030000	0.328358	
mm_71724.1	chr8	61976287	61976487	+	1	NA	NA	NA	48300	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.005000	0.383085	
mm_109308.1	chr12	109560680	109560880	+	1	NA	NA	NA	-2912	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.010000	0.422886	
mm_89010.1	chr10	81633602	81633802	+	1	NA	NA	NA	5162	NM_027480	70615	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0.045000	0.626866	
mm_31431.1	chr4	48124821	48125021	+	1	NA	NA	NA	2	NM_026343	67727	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0.110000	0.716418	
mm_83797.1	chr9	52679582	52679782	-	1	NA	NA	NA	98	NM_001286641	330941	Mm.335160	NM_177907	ENSMUSG00000078307	AI593442	E130102D23	expressed sequence AI593442	protein-coding	0.080000	0.696517	
mm_72428.1	chr8	82863304	82863504	+	1	NA	NA	NA	48	NM_177378	330812	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	0.045000	0.577114	
mm_67697.1	chr7	89518127	89518327	-	1	NA	NA	NA	-641	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.025000	0.611940	
mm_106128.1	chr11	116433707	116433907	-	1	NA	NA	NA	-287	NM_176902	319370	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	0.035000	0.467662	
mm_44814.1	chr5	33629440	33629640	-	1	NA	NA	NA	95	NM_178390	74504	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	0.140000	0.701493	
mm_60086.1	chr7	34389675	34389875	+	1	NA	NA	NA	-235	NM_025948	67070	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral	LSM14A mRNA processing body assembly factor	protein-coding	0.145000	0.716418	
mm_140830.1	chr17	23644970	23645170	-	1	NA	NA	NA	199	NM_001033339	240047	Mm.235343	NM_001033339	ENSMUSG00000023903	Mmp25	F730048C11Rik|Leukolysin|MMP20|MT6-MMP	matrix metallopeptidase 25	protein-coding	0.045000	0.621891	
mm_143291.1	chr17	65884669	65884869	-	1	NA	NA	NA	154	NM_001198949	19765	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.125000	0.731343	
mm_151374.1	chr19	55932644	55932844	+	1	NA	NA	NA	37423	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.035000	0.298507	
mm_157392.1	chrX	38406616	38406816	-	1	NA	NA	NA	49744	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.000000	0.318408	-33(GCTTATATGGTA,+,0.00)
mm_122918.1	chr14	54959751	54959951	-	1	NA	NA	NA	6756	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.025000	0.542289	
mm_55036.1	chr6	48987346	48987546	-	1	NA	NA	NA	585	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.030000	0.552239	
mm_107145.1	chr12	21543178	21543378	+	1	NA	NA	NA	-125842	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.060000	0.611940	
mm_1317.1	chr1	65080435	65080635	+	1	NA	NA	NA	1755	NM_144761	12965	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	0.015000	0.482587	
mm_96385.1	chr11	67245350	67245550	+	1	NA	NA	NA	7638	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.005000	0.527363	
mm_167858.1	chrX	12826229	12826429	+	1	NA	NA	NA	64051	NR_045852	552913	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	OTTMUSG00000017535	predicted gene 14634	ncRNA	0.000000	0.398010	-49(GTCTTTAAAGGG,+,0.00),-49(GTCTTTAAAGGG,-,0.00),-48(TCTTTAAAGGGG,+,0.00)
mm_159201.1	chr2	120609532	120609732	-	1	NA	NA	NA	37	NM_001290807	66296	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0.050000	0.582090	
mm_34929.1	chr4	155831564	155831764	+	1	NA	NA	NA	395	NM_025338	66077	Mm.28999	NM_025338	ENSMUSG00000065990	Aurkaip1	0610033H09Rik|Aip|Akip|MRP-S38	aurora kinase A interacting protein 1	protein-coding	0.115000	0.651741	
mm_13635.1	chr2	114047191	114047391	+	1	NA	NA	NA	5584	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.005000	0.398010	
mm_49612.1	chr6	30747249	30747449	+	1	NA	NA	NA	6050	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.407960	
mm_75380.1	chr8	45382037	45382237	-	1	NA	NA	NA	154	NM_153535	212326	Mm.51259	NM_153535	ENSMUSG00000070044	Fam149a	AW213256|mKIAA4166	family with sequence similarity 149, member A	protein-coding	0.015000	0.537313	
mm_65742.1	chr7	28527983	28528183	-	1	NA	NA	NA	5247	NM_177396	338374	Mm.246799	NM_177396	ENSMUSG00000060747	Ifnl3	IFL-1|IL-28B|INF-alpha|INF-lambda|Il28|Il28b	interferon lambda 3	protein-coding	0.050000	0.611940	
mm_1501.1	chr1	72236412	72236612	+	1	NA	NA	NA	-24205	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.075000	0.626866	
mm_145614.1	chr18	61105526	61105726	+	1	NA	NA	NA	54	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.000000	0.512438	
mm_8277.1	chr1	139923001	139923201	-	1	NA	NA	NA	-64402	NM_001025575	545366	Mm.439660	NM_001025575	ENSMUSG00000033898	Cfhr2	Cfhrb_4/2	complement factor H-related 2	protein-coding	0.000000	0.293532	
mm_95937.1	chr11	58382241	58382441	+	1	NA	NA	NA	1695	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.030000	0.572139	
mm_71832.1	chr8	68896699	68896899	+	1	NA	NA	NA	16244	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.010000	0.477612	
mm_62347.1	chr7	100498299	100498499	+	1	NA	NA	NA	5041	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.015000	0.517413	
mm_88912.1	chr10	81179790	81179990	+	1	NA	NA	NA	929	NR_028549	100217454		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.015000	0.522388	
mm_149377.1	chr19	11375487	11375687	+	1	NA	NA	NA	99	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.010000	0.447761	
mm_27758.1	chr3	69598882	69599082	-	1	NA	NA	NA	-22	NM_020026	26879	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0.165000	0.746269	
mm_121413.1	chr14	119544400	119544600	+	1	NA	NA	NA	-204727	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA	0.010000	0.343284	
mm_32469.1	chr4	107706969	107707169	+	1	NA	NA	NA	-22907	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.015000	0.547264	
mm_39347.1	chr5	8893828	8894028	+	1	NA	NA	NA	207	NM_008830	18670	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.120000	0.736318	
mm_24230.1	chr3	88950273	88950473	+	1	NA	NA	NA	-91	NM_001164533	65111	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0.125000	0.746269	
mm_159190.1	chr2	118388866	118389066	+	1	NA	NA	NA	-146	NM_001177806	27103	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	0.035000	0.567164	
mm_71807.1	chr8	68880456	68880656	+	1	NA	NA	NA	1	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.020000	0.472637	-76(GATTTTATAGCC,+,0.00),67(CCCCTTTAAAGG,-,0.00),68(CCCTTTAAAGGT,+,0.00),68(CCCTTTAAAGGT,-,0.00),69(CCTTTAAAGGTT,+,0.00)
mm_739.1	chr1	43457165	43457365	+	1	NA	NA	NA	11514	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.020000	0.388060	
mm_71446.1	chr8	46521247	46521447	+	1	NA	NA	NA	30381	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.030000	0.507463	
mm_116124.1	chr13	28951577	28951777	-	1	NA	NA	NA	2005	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.035000	0.467662	
mm_48603.1	chr5	144255016	144255216	-	1	NA	NA	NA	-109	NM_018772	55950	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.090000	0.671642	-34(GCGTCTTAAAGA,-,0.00)
mm_23725.1	chr3	69016580	69016780	+	1	NA	NA	NA	6778	NR_029735	723949		NR_029735	ENSMUSG00000065606	Mir16-2	Mirn16-2|mir-16-2	microRNA 16-2	ncRNA	0.000000	0.293532	-12(TGGTAGAAAAGG,-,0.00)
mm_25914.1	chr3	131134356	131134556	+	1	NA	NA	NA	21665	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.010000	0.447761	
mm_49015.1	chr6	4758495	4758695	+	1	NA	NA	NA	11289	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.303483	
mm_100513.1	chr11	120530448	120530648	+	1	NA	NA	NA	-179	NM_008101	14527	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.070000	0.671642	
mm_19790.1	chr2	108685925	108686125	-	1	NA	NA	NA	592265	NM_029790	76894	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.015000	0.442786	
mm_38941.1	chr4	150198088	150198288	-	1	NA	NA	NA	2947	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.040000	0.552239	
mm_66902.1	chr7	59977632	59977832	-	1	NA	NA	NA	1124	NR_028529	100217429		NR_028529		Snord64	MBII-13	small nucleolar RNA, C/D box 64	snoRNA	0.000000	0.268657	
mm_4316.1	chr1	171847980	171848180	+	1	NA	NA	NA	8383	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.407960	
mm_15485.1	chr2	157561931	157562131	+	1	NA	NA	NA	1953	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.025000	0.527363	
mm_109742.1	chr12	117516412	117516612	+	1	NA	NA	NA	33	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.000000	0.457711	
mm_27182.1	chr3	34648858	34649058	-	1	NA	NA	NA	-1037	NM_011443	20674	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0.095000	0.701493	
mm_50715.1	chr6	52190346	52190546	+	1	NA	NA	NA	1257	NM_008265	15401	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	0.035000	0.582090	
mm_59728.1	chr7	28788871	28789071	+	1	NA	NA	NA	2	NM_177158	320435	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0.015000	0.592040	
mm_123802.1	chr14	70520533	70520733	-	1	NA	NA	NA	-373	NR_033241	12153	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.055000	0.577114	46(GTGTCTAAGAGG,-,0.00)
mm_173049.1	chrX	12047620	12047820	-	1	NA	NA	NA	32833	NM_175045	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.035000	0.582090	
mm_56757.1	chr6	116101718	116101918	-	1	NA	NA	NA	91556	NM_177412	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.005000	0.358209	
mm_49844.1	chr6	38354595	38354795	+	1	NA	NA	NA	-92	NM_028421	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.055000	0.587065	
mm_82144.1	chr9	123773228	123773428	+	1	NA	NA	NA	6117	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.010000	0.442786	
mm_59280.1	chr7	24907239	24907439	+	1	NA	NA	NA	2993	NM_001130152	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.005000	0.552239	
mm_55053.1	chr6	49045357	49045557	-	1	NA	NA	NA	8939	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.020000	0.467662	
mm_75053.1	chr8	33330489	33330689	-	1	NA	NA	NA	54938	NM_001122822	22427	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome homolog (human)	protein-coding	0.020000	0.477612	
mm_61753.1	chr7	82771179	82771379	+	1	NA	NA	NA	-15635	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.055000	0.656716	
mm_53215.1	chr6	126821504	126821704	+	1	NA	NA	NA	27540	NM_025358	66108	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	0.010000	0.472637	-42(CTCCATAAAAGA,-,0.00)
mm_63643.1	chr7	128638485	128638685	+	1	NA	NA	NA	27220	NM_178641	101490	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0.005000	0.477612	
mm_124714.1	chr15	6578612	6578812	+	1	NA	NA	NA	-1135	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.005000	0.457711	
mm_12203.1	chr2	65930105	65930305	+	1	NA	NA	NA	-1660	NM_001290665	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding	0.035000	0.497512	
mm_60519.1	chr7	44479826	44480026	+	1	NA	NA	NA	-4591	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.522388	
mm_142521.1	chr17	46282562	46282762	-	1	NA	NA	NA	364	NM_001252475	74094	Mm.284594	NM_028751	ENSMUSG00000012296	Tjap1	0610041D19Rik|AI415281|AW121008|Pilt|Tjp4	tight junction associated protein 1	protein-coding	0.045000	0.616915	
mm_90741.1	chr10	5368180	5368380	-	1	NA	NA	NA	120034	NM_001347711	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.010000	0.402985	
mm_129282.1	chr15	77153695	77153895	-	1	NA	NA	NA	17	NM_001110830	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.005000	0.547264	
mm_33423.1	chr4	130047275	130047475	+	1	NA	NA	NA	-465	NM_028266	107581	Mm.41860	NM_028266	ENSMUSG00000040690	Col16a1	2700007F12Rik|A530052M23Rik|AI838662|CA1F	collagen, type XVI, alpha 1	protein-coding	0.025000	0.562189	
mm_50611.1	chr6	49586872	49587072	+	1	NA	NA	NA	191368	NM_029916	77485	Mm.128054	NM_029916	ENSMUSG00000023403	Stk31	C330007K24Rik	serine threonine kinase 31	protein-coding	0.015000	0.412935	
mm_71513.1	chr8	46846364	46846564	+	1	NA	NA	NA	106719	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.030000	0.597015	
mm_41794.1	chr5	103753538	103753738	+	1	NA	NA	NA	-524	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.045000	0.492537	
mm_61670.1	chr7	80781488	80781688	+	1	NA	NA	NA	21743	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.015000	0.537313	
mm_115145.1	chr13	104849531	104849731	+	1	NA	NA	NA	14262	NM_029984	77803	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik	family with sequence similarity 159, member B	protein-coding	0.010000	0.462687	
mm_132677.1	chr16	42921751	42921951	+	1	NA	NA	NA	-9781	NR_040402	100503040	Mm.490721	NR_040402		Gm19522	-	predicted gene, 19522	ncRNA	0.015000	0.398010	
mm_172461.1	chr7	42107184	42107384	-	1	NA	NA	NA	-9187	NM_001105057	637898	Mm.469900	NM_001105057	ENSMUSG00000090619	Vmn2r60	Casr-rs3|EG637898|Gprc2a-rs3	vomeronasal 2, receptor 60	protein-coding	0.035000	0.457711	
mm_78847.1	chr9	44328962	44329162	+	1	NA	NA	NA	2217	NM_007875	13478	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	0.020000	0.522388	-4(GGGCATTAATGG,-,0.00),-2(GCATTAATGGCC,+,0.00)
mm_6634.1	chr1	78658178	78658378	-	1	NA	NA	NA	-162	NM_001136226	195434	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0.140000	0.756219	
mm_52511.1	chr6	115361166	115361366	+	1	NA	NA	NA	122	NM_001308352	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.070000	0.641791	
mm_84173.1	chr9	59948471	59948671	-	1	NA	NA	NA	1508	NM_013708	23958	Mm.103641	NM_013708	ENSMUSG00000032292	Nr2e3	A930035N01Rik|PNR|RNR|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding	0.035000	0.567164	
mm_67744.1	chr7	90457048	90457248	-	1	NA	NA	NA	60	NM_025460	66271	Mm.28963	NM_025460	ENSMUSG00000030615	Tmem126a	1810020E01Rik	transmembrane protein 126A	protein-coding	0.080000	0.626866	
mm_150302.1	chr19	34570165	34570365	+	1	NA	NA	NA	-13264	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.005000	0.482587	
mm_17173.1	chr2	25319040	25319240	-	1	NA	NA	NA	47	NM_008169	14810	Mm.278672	NM_008169	ENSMUSG00000026959	Grin1	GluN1|GluRdelta1|GluRzeta1|M100174|NMD-R1|NMDAR1|NR1|Nmdar|Rgsc174	glutamate receptor, ionotropic, NMDA1 (zeta 1)	protein-coding	0.140000	0.676617	
mm_159659.1	chr4	150198336	150198536	-	1	NA	NA	NA	2699	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.020000	0.572139	
mm_86528.1	chr10	7832220	7832420	+	1	NA	NA	NA	-150	NM_172785	237256	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	0.045000	0.547264	
mm_80828.1	chr9	96896921	96897121	+	1	NA	NA	NA	-7547	NM_001289645	235534	Mm.233031	NM_153420	ENSMUSG00000043587	Pxylp1	9430094M07Rik|Acpl2|BB177120|C130099A20Rik	2-phosphoxylose phosphatase 1	protein-coding	0.000000	0.542289	
mm_102061.1	chr11	52253775	52253975	-	1	NA	NA	NA	21880	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.035000	0.577114	
mm_160858.1	chr11	59183103	59183303	-	1	NA	NA	NA	10	NM_080454	118454	Mm.40016	NM_080454	ENSMUSG00000043448	Gjc2	B230382L12Rik|Cx47|Gja12	gap junction protein, gamma 2	protein-coding	0.010000	0.631841	
mm_145797.1	chr18	65248149	65248349	+	1	NA	NA	NA	-612	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.005000	0.472637	
mm_143395.1	chr17	70687398	70687598	-	1	NA	NA	NA	125751	NM_001128181	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.010000	0.378109	
mm_33243.1	chr4	127029773	127029973	+	1	NA	NA	NA	8572	NM_023603	71514	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|OTTMUSG00000009329|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.020000	0.467662	
mm_113820.1	chr13	46810245	46810445	+	1	NA	NA	NA	-82496	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.030000	0.567164	
mm_172041.1	chr6	127145941	127146141	-	1	NA	NA	NA	-3348	NR_040274	77558	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.050000	0.621891	
mm_69519.1	chr7	135528516	135528716	-	1	NA	NA	NA	38	NM_178669	212070	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	0.030000	0.427861	
mm_65628.1	chr7	27542241	27542441	-	1	NA	NA	NA	10877	NM_011116	18807	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.020000	0.457711	
mm_157130.1	chrX	9446828	9447028	-	1	NA	NA	NA	22396	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.427861	
mm_59114.1	chr7	19822836	19823036	+	1	NA	NA	NA	-181	NM_033601	12051	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.050000	0.601990	
mm_93929.1	chr10	127166164	127166364	-	1	NA	NA	NA	433	NM_001244618	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.070000	0.636816	
mm_4254.1	chr1	171409520	171409720	+	1	NA	NA	NA	-1693	NM_001305678	22278	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	0.000000	0.363184	
mm_91587.1	chr10	40247026	40247226	-	1	NA	NA	NA	-87	NM_023323	67239	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	0.095000	0.557214	-96(TCCCTGAAAAGG,-,0.00)
mm_128783.1	chr15	66801584	66801784	-	1	NA	NA	NA	30145	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.000000	0.437811	37(CCCCTTTTAAGA,-,0.00),39(CCTTTTAAGAAG,+,0.00)
mm_118328.1	chr13	113663543	113663743	-	1	NA	NA	NA	33	NM_019960	56534	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	0.040000	0.532338	-47(GGCTATAAATAG,-,0.00),-45(CTATAAATAGCC,+,0.00)
mm_27539.1	chr3	57576350	57576550	-	1	NA	NA	NA	-540	NM_001168281	97064	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0.045000	0.517413	
mm_81847.1	chr9	118558338	118558538	+	1	NA	NA	NA	-48271	NM_133721	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.020000	0.427861	-94(ATGTTTAAAAGG,-,0.00)
mm_81655.1	chr9	110960759	110960959	+	1	NA	NA	NA	9314	NM_028838	74249	Mm.307615	NM_028838	ENSMUSG00000032495	Lrrc2	2400002D05Rik|4933431K03Rik	leucine rich repeat containing 2	protein-coding	0.025000	0.532338	
mm_99730.1	chr11	106301078	106301278	+	1	NA	NA	NA	718	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.030000	0.577114	
mm_126422.1	chr15	80572358	80572558	+	1	NA	NA	NA	-139	NM_001289442	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.020000	0.552239	
mm_37534.1	chr4	124936739	124936939	-	1	NA	NA	NA	78	NM_026560	52276	Mm.28038	NM_026560	ENSMUSG00000028873	Cdca8	4831429J16Rik|AU044747|BOR|Borealin|D4Ertd421e|DasraB|MESRGP	cell division cycle associated 8	protein-coding	0.050000	0.557214	
mm_162141.1	chrX	74282452	74282652	-	1	NA	NA	NA	-166	NM_001173547	66826	Mm.268483	NM_181516	ENSMUSG00000009995	Taz	5031411C02Rik|9130012G04Rik|AW107266|AW552613|G4.5	tafazzin	protein-coding	0.045000	0.507463	
mm_80466.1	chr9	78113211	78113411	+	1	NA	NA	NA	73	NM_019987	56542	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	0.090000	0.686567	
mm_54592.1	chr6	38195304	38195504	-	1	NA	NA	NA	58605	NM_194061	330286	Mm.277163	NM_194061	ENSMUSG00000063455	D630045J12Rik	Kiaa1549|mKIAA1549	RIKEN cDNA D630045J12 gene	protein-coding	0.040000	0.537313	
mm_114679.1	chr13	80886136	80886336	+	1	NA	NA	NA	2814	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.120000	0.666667	
mm_81830.1	chr9	118059357	118059557	+	1	NA	NA	NA	18935	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.000000	0.348259	
mm_81388.1	chr9	108982886	108983086	+	1	NA	NA	NA	-3177	NM_145077	171530	Mm.388865	NM_145077	ENSMUSG00000049699	Ucn2	Ucn II|Ucn-2|ucn-II	urocortin 2	protein-coding	0.010000	0.542289	
mm_16273.1	chr2	173719385	173719585	+	1	NA	NA	NA	70	NM_029308	75485	Mm.308031	NM_029308	ENSMUSG00000057047	1700010B08Rik	-	RIKEN cDNA 1700010B08 gene	protein-coding	0.010000	0.552239	
mm_43814.1	chr5	142905322	142905522	+	1	NA	NA	NA	1332	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.020000	0.532338	
mm_91905.1	chr10	60219222	60219422	-	1	NA	NA	NA	-62	NM_016803	53374	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	0.075000	0.706468	
mm_114157.1	chr13	55404984	55405184	+	1	NA	NA	NA	5436	NM_011392	20505	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	0.005000	0.393035	
mm_151837.1	chr19	5720610	5720810	-	1	NA	NA	NA	5607	NM_001114595	114601	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0.015000	0.636816	
mm_149088.1	chr19	8921966	8922166	+	1	NA	NA	NA	1673	NM_024256	72727	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	0.015000	0.442786	
mm_84201.1	chr9	60649699	60649899	-	1	NA	NA	NA	37735	NM_001311095	102747	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0.040000	0.572139	
mm_107085.1	chr12	17354742	17354942	+	1	NA	NA	NA	-550	NR_037226	100526470		NR_037226	ENSMUSG00000093037	Mir3066	mir-3066|mmu-mir-3066	microRNA 3066	ncRNA	0.015000	0.482587	
mm_148762.1	chr19	6061344	6061544	+	1	NA	NA	NA	237	NM_013859	29805	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	0.150000	0.701493	
mm_79414.1	chr9	55208913	55209113	+	1	NA	NA	NA	78	NM_028049	71999	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	0.125000	0.711443	
mm_173182.1	chrX	57657694	57657894	-	1	NA	NA	NA	-154037	NM_001033360	245424	Mm.336070	NM_001033360	ENSMUSG00000036357	Gpr101	GPCR6|Gm365	G protein-coupled receptor 101	protein-coding	0.005000	0.492537	
mm_87169.1	chr10	37139433	37139633	+	1	NA	NA	NA	-607	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.030000	0.427861	
mm_48734.1	chr5	147566651	147566851	-	1	NA	NA	NA	136171	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.020000	0.497512	-70(CCTTTTATGAGA,+,0.00)
mm_142238.1	chr17	37481139	37481339	-	1	NA	NA	NA	2290	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.005000	0.477612	
mm_118012.1	chr13	100730801	100731001	-	1	NA	NA	NA	41	NM_009874	12572	Mm.259718	NM_009874	ENSMUSG00000069089	Cdk7	AI323415|AI528512|C230069N13|Cdkn7|Crk4	cyclin-dependent kinase 7	protein-coding	0.090000	0.621891	
mm_99618.1	chr11	104607952	104608152	+	1	NA	NA	NA	52	NM_016780	16416	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding	0.130000	0.761194	
mm_118300.1	chr13	113087239	113087439	-	1	NA	NA	NA	13642	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.020000	0.567164	64(GGCTCTTAAAAC,-,0.00)
mm_99765.1	chr11	106789185	106789385	+	1	NA	NA	NA	33	NM_001166685	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.095000	0.646766	
mm_166102.1	chr4	146430938	146431138	+	1	NA	NA	NA	-17992	NM_001085522	433791	Mm.276881	NM_001085522	ENSMUSG00000070605	Zfp992	Gm13251|OTTMUSG00000011097	zinc finger protein 992	protein-coding	0.010000	0.477612	
mm_139166.1	chr17	47557707	47557907	+	1	NA	NA	NA	-35660	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.447761	
mm_139744.1	chr17	63422030	63422230	+	1	NA	NA	NA	78450	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.000000	0.467662	
mm_130446.1	chr15	98523679	98523879	-	1	NA	NA	NA	2680	NR_034052	100217416	Mm.296240	NR_034052	ENSMUSG00000065939	Snora2b	MBI-137	small nucleolar RNA, H/ACA box 2B	snoRNA	0.005000	0.363184	42(GACTTTAAAAAG,-,0.00),44(CTTTAAAAAGCT,+,0.00)
mm_30270.1	chr3	146781132	146781332	-	1	NA	NA	NA	184	NM_001164200	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.035000	0.597015	
mm_54479.1	chr6	35090588	35090788	-	1	NA	NA	NA	43049	NM_001164412	53621	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0.000000	0.442786	
mm_54844.1	chr6	42586778	42586978	-	1	NA	NA	NA	10494	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.343284	
mm_32275.1	chr4	102760074	102760274	+	1	NA	NA	NA	39	NM_001285859	73094	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0.065000	0.651741	
mm_2626.1	chr1	120644586	120644786	+	1	NA	NA	NA	42199	NM_010133	13798	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1|engrailed-1	engrailed 1	protein-coding	0.025000	0.527363	
mm_153496.1	chr19	41332237	41332437	-	1	NA	NA	NA	52733	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.040000	0.522388	
mm_32415.1	chr4	107047334	107047534	+	1	NA	NA	NA	19432	NM_025500	56280	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0.025000	0.557214	
mm_170894.1	chr2	28477016	28477216	+	1	NA	NA	NA	9050	NM_001166031	118451	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	0.045000	0.522388	
mm_65581.1	chr7	27228521	27228721	-	1	NA	NA	NA	-24	NM_181593	233011	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	0.080000	0.646766	76(GGATTTTAAAGG,-,0.00),77(GATTTTAAAGGG,-,0.00)
mm_117812.1	chr13	97747307	97747507	-	1	NA	NA	NA	187407	NR_046157	328314	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.025000	0.462687	
mm_138628.1	chr17	35841729	35841929	+	1	NA	NA	NA	331	NM_001010833	240087	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	0.055000	0.562189	
mm_63851.1	chr7	135662119	135662319	+	1	NA	NA	NA	-9905	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.000000	0.447761	
mm_69047.1	chr7	126831573	126831773	-	1	NA	NA	NA	-177	NM_183131	78118	Mm.107753	NM_183131	ENSMUSG00000045989	4930451I11Rik	-	RIKEN cDNA 4930451I11 gene	protein-coding	0.005000	0.512438	
mm_5510.1	chr1	37495998	37496198	-	1	NA	NA	NA	-7493	NR_024017	77633	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.015000	0.447761	
mm_151518.1	chr19	58738208	58738408	+	1	NA	NA	NA	9421	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.015000	0.492537	
mm_52833.1	chr6	121365755	121365955	+	1	NA	NA	NA	19158	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.010000	0.517413	
mm_68023.1	chr7	100964347	100964547	-	1	NA	NA	NA	-81	NM_183168	233571	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.020000	0.567164	
mm_115418.1	chr13	117048647	117048847	+	1	NA	NA	NA	-23231	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.005000	0.437811	
mm_170836.1	chr2	177080136	177080336	+	1	NA	NA	NA	-152423	NM_001305133	102639598	Mm.379980	NM_029813	ENSMUSG00000074527	Gm14296	-	predicted gene 14296	protein-coding	0.005000	0.492537	
mm_100987.1	chr11	7213822	7214022	-	1	NA	NA	NA	1	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding	0.125000	0.731343	
mm_64661.1	chr7	4164600	4164800	-	1	NA	NA	NA	-1	NM_021454	58804	Mm.34268	NM_021454	ENSMUSG00000063838	Cdc42ep5	1700027J19Rik|2010007O02Rik|Borg3|C85526|CEP5	CDC42 effector protein (Rho GTPase binding) 5	protein-coding	0.025000	0.557214	88(ACTTTTAGGGAC,+,0.00)
mm_59006.1	chr7	19181332	19181532	+	1	NA	NA	NA	-33	NR_029763	724063		NR_029763	ENSMUSG00000065543	Mir330	Mirn330|mir-330|mmu-mir-330	microRNA 330	ncRNA	0.045000	0.587065	
mm_96330.1	chr11	64979029	64979229	+	1	NA	NA	NA	94	NM_023479	68626	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	0.105000	0.686567	
mm_71591.1	chr8	54954902	54955102	+	1	NA	NA	NA	274	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.015000	0.432836	
mm_127391.1	chr15	101115680	101115880	+	1	NA	NA	NA	25	NM_144790	208258	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	0.005000	0.577114	
mm_135208.1	chr16	36610763	36610963	-	1	NA	NA	NA	-48729	NM_013803	12374	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.005000	0.333333	-28(GCATTAAAAGTC,+,0.00)
mm_64259.1	chr7	141745380	141745580	+	1	NA	NA	NA	-43531	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.000000	0.477612	
mm_130729.1	chr15	101225047	101225247	-	1	NA	NA	NA	39	NR_045328	380977	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.055000	0.587065	
mm_143368.1	chr17	67354448	67354648	-	1	NA	NA	NA	-89	NM_008984	19274	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.165000	0.815920	
mm_21167.1	chr2	154632552	154632752	-	1	NA	NA	NA	19284	NM_199304	228807	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	0.025000	0.537313	
mm_8840.1	chr1	162688080	162688280	-	1	NA	NA	NA	-29961	NM_001177581	100038657	Mm.416999	NM_001177581	ENSMUSG00000091060	7420461P10Rik	ENSMUSG00000073516	RIKEN cDNA 7420461P10 gene	protein-coding	0.000000	0.472637	-46(CCTTTTCAGGTG,+,0.00),-13(CTCCCTAAGAGG,-,0.00)
mm_33403.1	chr4	129827199	129827399	+	1	NA	NA	NA	6591	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.005000	0.393035	
mm_84416.1	chr9	65572931	65573131	-	1	NA	NA	NA	7056	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.030000	0.572139	-99(GAGTATAAAGGA,-,0.00)
mm_7121.1	chr1	90775675	90775875	-	1	NA	NA	NA	68196	NM_001243009	12835	Mm.7562	NM_009935	ENSMUSG00000048126	Col6a3	AI507288|Col6a-3	collagen, type VI, alpha 3	protein-coding	0.015000	0.611940	
mm_159829.1	chr5	125042684	125042884	-	1	NA	NA	NA	39309	NM_028443	73121	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.040000	0.636816	
mm_142492.1	chr17	46017662	46017862	-	1	NA	NA	NA	7401	NM_001110267	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.015000	0.432836	
mm_96217.1	chr11	62458491	62458691	+	1	NA	NA	NA	131	NM_001039536	327942	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.065000	0.636816	
mm_44152.1	chr5	150418327	150418527	+	1	NA	NA	NA	83792	NR_024513	194292	Mm.300184	NR_024513		Gm5	Gm1812	predicted gene 5	ncRNA	0.030000	0.517413	
mm_122841.1	chr14	54724085	54724285	-	1	NA	NA	NA	-12011	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.020000	0.532338	
mm_4349.1	chr1	171868721	171868921	+	1	NA	NA	NA	29124	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.010000	0.427861	
mm_74019.1	chr8	121570541	121570741	+	1	NA	NA	NA	8165	NM_133765	76454	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0.045000	0.587065	
mm_117818.1	chr13	98014908	98015108	-	1	NA	NA	NA	191157	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0.015000	0.502488	
mm_90256.1	chr10	122406290	122406490	+	1	NA	NA	NA	-42109	NM_016847	54140	Mm.4351	NM_016847	ENSMUSG00000020123	Avpr1a	AVPR|Avpr1|V1a|V1aR	arginine vasopressin receptor 1A	protein-coding	0.020000	0.378109	
mm_85991.1	chr9	112199811	112200011	-	1	NA	NA	NA	-11982	NM_028755	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.010000	0.412935	-71(GGGTTTAAGAGC,-,0.00)
mm_117103.1	chr13	60174931	60175131	-	1	NA	NA	NA	2504	NM_008086	14451	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	0.010000	0.353234	
mm_58766.1	chr7	15881592	15881792	+	1	NA	NA	NA	-925	NR_038092	546024	Mm.259041	NM_001033638	ENSMUSG00000074365	Crxos	AA606869|AY590891|Crxos1|Egam1	cone-rod homeobox, opposite strand	protein-coding	0.015000	0.502488	-97(GGCCAGAAAGGG,-,0.00)
mm_127720.1	chr15	103135703	103135903	+	1	NA	NA	NA	11025	NR_045743	432989	Mm.383979	NR_045743	ENSMUSG00000097003	D930007P13Rik	-	Riken cDNA D930007P13 gene	ncRNA	0.045000	0.527363	
mm_101964.1	chr11	50307496	50307696	-	1	NA	NA	NA	-15260	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.010000	0.402985	
mm_103766.1	chr11	81858626	81858826	-	1	NA	NA	NA	-1951	NR_038010	71388	Mm.158687	NR_038010	ENSMUSG00000020703	5530401A14Rik	-	RIKEN cDNA 5530401A14 gene	ncRNA	0.005000	0.333333	
mm_38201.1	chr4	135507516	135507716	-	1	NA	NA	NA	11629	NM_030189	78806	Mm.374844	NM_030189	ENSMUSG00000028801	Stpg1	4930403G18Rik|4930555I21Rik|Mapo2	sperm tail PG rich repeat containing 1	protein-coding	0.030000	0.522388	
mm_144137.1	chr18	4993707	4993907	+	1	NA	NA	NA	-52782	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.005000	0.527363	
mm_13591.1	chr2	112498070	112498270	+	1	NA	NA	NA	5206	NM_028844	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.015000	0.567164	
mm_22880.1	chr3	29467802	29468002	+	1	NA	NA	NA	51079	NR_030422	791072		NR_030422	ENSMUSG00000076120	Mir551b	Mirn551b|mir-551b	microRNA 551b	ncRNA	0.015000	0.437811	
mm_82496.1	chr9	18674751	18674951	-	1	NA	NA	NA	80782	NM_146606	18322	Mm.246530	NM_146606	ENSMUSG00000054141	Olfr24	MOR132-1|MTPCR51	olfactory receptor 24	protein-coding	0.005000	0.432836	
mm_71613.1	chr8	56617391	56617591	+	1	NA	NA	NA	66357	NM_015791	50753	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0.005000	0.402985	
mm_7086.1	chr1	88559216	88559416	-	1	NA	NA	NA	7799	NR_037971	100503197	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.010000	0.542289	
mm_119350.1	chr14	41109420	41109620	+	1	NA	NA	NA	4487	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.005000	0.457711	
mm_72217.1	chr8	72688292	72688492	+	1	NA	NA	NA	-34878	NM_001113248	20467	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0.000000	0.467662	
mm_133079.1	chr16	59457516	59457716	+	1	NA	NA	NA	11622	NR_040568	75636	Mm.490522	NR_040568	ENSMUSG00000099983	1700022E09Rik	-	RIKEN cDNA 1700022E09 gene	ncRNA	0.060000	0.592040	-51(TGCTTTAAAAGA,-,0.00),-50(GCTTTAAAAGAA,+,0.00)
mm_171859.1	chr5	21689227	21689427	+	1	NA	NA	NA	12018	NM_178728	242864	Mm.153292	NM_178728	ENSMUSG00000044968	Napepld	A530089G06|Mbldc1|NAPE-PLD	N-acyl phosphatidylethanolamine phospholipase D	protein-coding	0.040000	0.442786	
mm_89048.1	chr10	82866508	82866708	+	1	NA	NA	NA	-18	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.045000	0.582090	
mm_109508.1	chr12	111452245	111452445	+	1	NA	NA	NA	9684	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.000000	0.457711	
mm_92873.1	chr10	82354050	82354250	-	1	NA	NA	NA	-112875	NM_001105557	237411		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding	0.010000	0.492537	
mm_124821.1	chr15	9071530	9071730	+	1	NA	NA	NA	370	NM_001040395	68646	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.170000	0.781095	
mm_93055.1	chr10	88675664	88675864	-	1	NA	NA	NA	7259	NM_011461	20728	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	0.015000	0.487562	
mm_74186.1	chr8	123649659	123649859	+	1	NA	NA	NA	-4170	NM_133955	69581	Mm.168257	NM_133955	ENSMUSG00000039960	Rhou	2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K	ras homolog family member U	protein-coding	0.025000	0.507463	
mm_124871.1	chr15	10177670	10177870	+	1	NA	NA	NA	532	NM_011169	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.030000	0.532338	
mm_17056.1	chr2	21205257	21205457	-	1	NA	NA	NA	8	NM_027728	71233	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.035000	0.412935	
mm_58498.1	chr7	3704585	3704785	+	1	NA	NA	NA	644	NM_029767	76846	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	0.065000	0.572139	
mm_4782.1	chr1	184033579	184033779	+	1	NA	NA	NA	319	NM_028516	73363	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.095000	0.711443	
mm_11815.1	chr2	44029553	44029753	+	1	NA	NA	NA	35671	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.010000	0.338308	
mm_114921.1	chr13	95325079	95325279	+	1	NA	NA	NA	354	NM_028106	72114	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	0.100000	0.567164	-82(CCGTTTAAAAAC,-,0.00),77(GTGTCTTTAAGG,-,0.00),79(GTCTTTAAGGGG,-,0.00),80(TCTTTAAGGGGG,+,0.00)
mm_49413.1	chr6	28754639	28754839	+	1	NA	NA	NA	77008	NM_138682	192198	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.005000	0.432836	
mm_6890.1	chr1	84695933	84696133	-	1	NA	NA	NA	188	NM_152915	227325	Mm.292560	NM_152915	ENSMUSG00000036766	Dner	A930026D19Rik|BET|Bret	delta/notch-like EGF repeat containing	protein-coding	0.040000	0.611940	
mm_126255.1	chr15	79075127	79075327	+	1	NA	NA	NA	4	NM_145139	223691	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	0.110000	0.661692	
mm_164504.1	chr16	92831182	92831382	-	1	NA	NA	NA	-5208	NM_001111022	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.010000	0.477612	
mm_70003.1	chr7	142387769	142387969	-	1	NA	NA	NA	1	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.115000	0.661692	6(CTGCCTATAAGC,-,0.00)
mm_66992.1	chr7	64345311	64345511	-	1	NA	NA	NA	28684	NM_177893	330554	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.000000	0.462687	
mm_53999.1	chr6	7692366	7692566	-	1	NA	NA	NA	716	NM_012055	27053	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0.040000	0.383085	
mm_88932.1	chr10	81258058	81258258	+	1	NA	NA	NA	859	NM_001285853	17179	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0.025000	0.611940	
mm_161321.1	chr14	46883975	46884175	+	1	NA	NA	NA	1110	NM_001037221	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.065000	0.661692	
mm_165645.1	chr3	82308329	82308529	+	1	NA	NA	NA	-49643	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0.005000	0.353234	
mm_143622.1	chr17	78856518	78856718	-	1	NA	NA	NA	-4074	NR_003363	625054	Mm.311918	NR_003363		Gm6548	EG625054	eukaryotic translation elongation factor 1 alpha 1 pseudogene	pseudo	0.020000	0.412935	
mm_47687.1	chr5	129008471	129008671	-	1	NA	NA	NA	1	NM_001286034	13852	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	0.125000	0.771144	
mm_64358.1	chr7	142390186	142390386	+	1	NA	NA	NA	-2416	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.005000	0.522388	
mm_94104.1	chr10	128568577	128568777	-	1	NA	NA	NA	-2743	NM_011119	18813	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	0.005000	0.303483	
mm_93696.1	chr10	117845884	117846084	-	1	NA	NA	NA	-10	NM_024457	215449	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.175000	0.771144	
mm_89624.1	chr10	96227718	96227918	+	1	NA	NA	NA	1611	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.015000	0.417910	
mm_56075.1	chr6	87180667	87180867	-	1	NA	NA	NA	76021	NM_001167937	52372	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0.010000	0.432836	
mm_124663.1	chr15	6299763	6299963	+	1	NA	NA	NA	74	NM_001008702	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.010000	0.427861	
mm_152464.1	chr19	10948220	10948420	-	1	NA	NA	NA	946	NM_023731	108673	Mm.294908	NM_023731	ENSMUSG00000024732	Ccdc86	4933411H20Rik|6720480F16Rik|D19Ertd678e	coiled-coil domain containing 86	protein-coding	0.030000	0.507463	
mm_55717.1	chr6	73221571	73221771	-	1	NA	NA	NA	-40	NM_001164669	330355	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0.050000	0.587065	
mm_34921.1	chr4	155761237	155761437	+	1	NA	NA	NA	145	NR_027972	70448	Mm.70636	NM_175157	ENSMUSG00000054514	Atad3aos	2610204G22Rik	ATPase family, AAA domain containing 3A, opposite strand	ncRNA	0.025000	0.467662	48(GCATTTATGGAG,+,0.00)
mm_85363.1	chr9	103219153	103219353	-	1	NA	NA	NA	11033	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.010000	0.407960	
mm_41789.1	chr5	103738365	103738565	+	1	NA	NA	NA	-15697	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.000000	0.442786	
mm_169440.1	chr14	56693945	56694145	-	1	NA	NA	NA	6955	NR_046209	100503823	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	0.035000	0.457711	
mm_55388.1	chr6	59024359	59024559	-	1	NA	NA	NA	43	NM_153574	58909	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0.035000	0.572139	
mm_154952.1	chrX	36604746	36604946	+	1	NA	NA	NA	6653	NM_016783	53328	Mm.9052	NM_016783	ENSMUSG00000006373	Pgrmc1	AA415812|HPR6.6|PPMR|Vema	progesterone receptor membrane component 1	protein-coding	0.020000	0.407960	
mm_53257.1	chr6	127887511	127887711	+	1	NA	NA	NA	-11	NM_026743	68498	Mm.174368	NM_026743	ENSMUSG00000030351	Tspan11	1110014F12Rik|AU067806	tetraspanin 11	protein-coding	0.035000	0.597015	
mm_30859.1	chr4	28965022	28965222	+	1	NA	NA	NA	151977	NM_001122889	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.005000	0.373134	
mm_159157.1	chr2	89752903	89753103	-	1	NA	NA	NA	-177	NM_146373	258370	Mm.480193	NM_146373	ENSMUSG00000075075	Olfr1253	MOR231-18|MOR231-19P|Olfr1253-ps1|Olfr1559-ps1	olfactory receptor 1253	protein-coding	0.000000	0.348259	
mm_6388.1	chr1	72849193	72849393	-	1	NA	NA	NA	23906	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.025000	0.577114	
mm_66813.1	chr7	48124121	48124321	-	1	NA	NA	NA	44764	NM_207538	404239	Mm.377927	NM_207538	ENSMUSG00000070551	Mrgprb5	Mgrg11|MrgB5	MAS-related GPR, member B5	protein-coding	0.020000	0.432836	
mm_141284.1	chr17	27909552	27909752	-	1	NA	NA	NA	346	NM_181413	224650	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.150000	0.776119	
mm_53051.1	chr6	124805735	124805935	+	1	NA	NA	NA	-2826	NM_001306051	14794	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.045000	0.552239	
mm_162406.1	chr1	86356926	86357126	+	1	NA	NA	NA	-699	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.005000	0.447761	
mm_147807.1	chr18	61665429	61665629	-	1	NA	NA	NA	9	NR_045402	328968	Mm.392305	NR_045402		Carmn	Carmen|E330013P06|Gm16908|Mir143hg	cardiac mesoderm enhancer-associated non-coding RNA	ncRNA	0.045000	0.626866	1(GCTCATATAAGG,-,0.00),88(GCTTAAAAATGC,+,0.00)
mm_36184.1	chr4	62208630	62208830	-	1	NA	NA	NA	-184	NM_001290350	22696	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0.065000	0.577114	
mm_50746.1	chr6	52745597	52745797	+	1	NA	NA	NA	31968	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.015000	0.353234	
mm_78053.1	chr9	14784638	14784838	+	1	NA	NA	NA	84	NM_018736	17535	Mm.149071	NM_018736	ENSMUSG00000031928	Mre11a	Mre11|Mre11b	MRE11A homolog A, double strand break repair nuclease	protein-coding	0.060000	0.547264	
mm_161895.1	chr18	43963040	43963240	+	1	NA	NA	NA	-101	NM_001081180	72432	Mm.35369	NM_001081180	ENSMUSG00000055561	Spink5	2310065D10Rik|AV238912|LEKT1|LETK1|VAKT1	serine peptidase inhibitor, Kazal type 5	protein-coding	0.005000	0.378109	
mm_98117.1	chr11	87126947	87127147	+	1	NA	NA	NA	-28	NM_197987	68729	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.150000	0.736318	
mm_109665.1	chr12	113023280	113023480	+	1	NA	NA	NA	8872	NM_001291444	217893	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.015000	0.482587	
mm_74938.1	chr8	25808149	25808349	-	1	NA	NA	NA	-225	NM_011485	20845	Mm.293314	NM_011485	ENSMUSG00000031574	Star	AV363654|D8Ertd419e|stARD1	steroidogenic acute regulatory protein	protein-coding	0.010000	0.477612	18(CCGCTTAAATGC,-,0.00),20(GCTTAAATGCCC,+,0.00)
mm_128312.1	chr15	37899600	37899800	-	1	NA	NA	NA	61355	NM_199476	382985	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.005000	0.487562	88(AACTATAAAAGA,-,0.00)
mm_65528.1	chr7	25788420	25788620	-	1	NA	NA	NA	213	NM_001190974	26362	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.035000	0.661692	
mm_69129.1	chr7	127026651	127026851	-	1	NA	NA	NA	-272	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.160000	0.870647	
mm_66889.1	chr7	59279954	59280154	-	1	NA	NA	NA	44095	NR_015479	330544	Mm.9002	NR_015479	ENSMUSG00000100826	C230091D08Rik	-	RIKEN cDNA C230091D08 gene	ncRNA	0.005000	0.278607	
mm_53148.1	chr6	125241865	125242065	+	1	NA	NA	NA	-4938	NM_001286753	21940	Mm.367714	NM_001033126	ENSMUSG00000030336	Cd27	S152|Tnfrsf7|Tp55	CD27 antigen	protein-coding	0.015000	0.482587	-82(GCTTTAATGCTG,+,0.00),-40(GCCTAGTAAAGC,-,0.00)
mm_2539.1	chr1	107422588	107422788	+	1	NA	NA	NA	-1	NM_027548	116872	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	0.005000	0.447761	
mm_85271.1	chr9	99436518	99436718	-	1	NA	NA	NA	94	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.160000	0.815920	
mm_153418.1	chr19	40638634	40638834	-	1	NA	NA	NA	-21036	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.020000	0.447761	
mm_127170.1	chr15	98789909	98790109	+	1	NA	NA	NA	152	NM_021279	22408	Mm.1123	NM_021279	ENSMUSG00000022997	Wnt1	Int-1|Wnt-1|sw|swaying	wingless-type MMTV integration site family, member 1	protein-coding	0.060000	0.641791	-40(AACTATAAGAGG,-,0.00),-29(GCCTATAAGAGG,-,0.00)
mm_143406.1	chr17	70819684	70819884	-	1	NA	NA	NA	26993	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.005000	0.253731	
mm_87230.1	chr10	40570281	40570481	+	1	NA	NA	NA	19	NM_027572	70840	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.055000	0.666667	
mm_147007.1	chr18	34506574	34506774	-	1	NA	NA	NA	149	NM_146084	225358	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	0.140000	0.741294	
mm_75518.1	chr8	54724384	54724584	-	1	NA	NA	NA	-116	NM_001172152	244484	Mm.95281	NM_028220	ENSMUSG00000039375	Wdr17	3010002I12Rik|B230207L18Rik	WD repeat domain 17	protein-coding	0.045000	0.636816	
mm_38725.1	chr4	145234876	145235076	-	1	NA	NA	NA	11894	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.005000	0.358209	
mm_4398.1	chr1	172370773	172370973	+	1	NA	NA	NA	-5658	NM_026234	67556	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	0.000000	0.482587	
mm_65319.1	chr7	24904036	24904236	-	1	NA	NA	NA	-210	NM_001130152	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.035000	0.547264	
mm_110739.1	chr12	69791195	69791395	-	1	NA	NA	NA	-588	NM_183294	71091	Mm.132325	NM_183294	ENSMUSG00000020990	Cdkl1	4933411O17Rik	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding	0.055000	0.587065	
mm_78853.1	chr9	44336194	44336394	+	1	NA	NA	NA	1579	NM_010436	15270	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	0.015000	0.358209	57(AAGTTTAAAAGG,-,0.00),59(GTTTAAAAGGGC,+,0.00)
mm_129228.1	chr15	76614134	76614334	-	1	NA	NA	NA	2618	NM_028064	72027	Mm.276829	NM_028064	ENSMUSG00000063354	Slc39a4	1600025H15Rik|AU041686|AWMS2|ZIP4	solute carrier family 39 (zinc transporter), member 4	protein-coding	0.015000	0.567164	
mm_45976.1	chr5	90471964	90472164	-	1	NA	NA	NA	11194	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.462687	-96(GTGTTTAAAAGA,-,0.00)
mm_151383.1	chr19	56319590	56319790	+	1	NA	NA	NA	31778	NM_146101	226243	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0.010000	0.557214	
mm_62182.1	chr7	97453169	97453369	+	1	NA	NA	NA	65	NM_001012434	233529	Mm.334033	NM_001010826	ENSMUSG00000051727	Kctd14	AI449310|D7Ertd760e	potassium channel tetramerisation domain containing 14	protein-coding	0.045000	0.572139	
mm_116879.1	chr13	55022677	55022877	-	1	NA	NA	NA	-1392	NM_001033245	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.025000	0.482587	
mm_30360.1	chr3	151835837	151836037	-	1	NA	NA	NA	1591	NM_008966	19220	Mm.331442	NM_008966	ENSMUSG00000028036	Ptgfr	AI957154|PGF|fp	prostaglandin F receptor	protein-coding	0.005000	0.472637	
mm_85549.1	chr9	106685615	106685815	-	1	NA	NA	NA	101	NM_011573	21767	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.110000	0.746269	
mm_87193.1	chr10	39465373	39465573	+	1	NA	NA	NA	95674	NM_001122893	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.000000	0.398010	
mm_104240.1	chr11	88718081	88718281	-	1	NA	NA	NA	48	NM_054043	76626	Mm.400451	NM_054043	ENSMUSG00000069769	Msi2	1700105C15Rik|AI451722|AI563628|AW489193|Msi2h	musashi RNA-binding protein 2	protein-coding	0.135000	0.781095	
mm_140361.1	chr17	86855593	86855793	+	1	NA	NA	NA	-61655	NM_001277980	78469	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	0.005000	0.537313	
mm_3865.1	chr1	160989280	160989480	+	1	NA	NA	NA	10774	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.035000	0.537313	
mm_150348.1	chr19	34643227	34643427	+	1	NA	NA	NA	2438	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.005000	0.368159	-53(GTTTATATAGAT,+,0.00)
mm_173055.1	chrX	124549253	124549453	+	1	NA	NA	NA	-413443	NM_001100616	100038941	Mm.388852	NM_001100616	ENSMUSG00000072049	Vmn2r121	EG625699	vomeronasal 2, receptor 121	protein-coding	0.035000	0.522388	
mm_53347.1	chr6	129350127	129350327	+	1	NA	NA	NA	-17	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.000000	0.338308	
mm_19822.1	chr2	110840035	110840235	-	1	NA	NA	NA	110109	NM_001128103	228432	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding	0.010000	0.427861	-77(TCTTTTAAAATC,+,0.00),-50(GCATTTAAAGAG,+,0.00),-36(GCCTTAAAACCC,+,0.00)
mm_124912.1	chr15	11064712	11064912	+	1	NA	NA	NA	39	NM_175501	239337	Mm.224825	NM_175501	ENSMUSG00000047497	Adamts12	ADAMTS-12|AI605170	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12	protein-coding	0.025000	0.606965	
mm_55756.1	chr6	78378806	78379006	-	1	NA	NA	NA	-41	NM_013893	30053	Mm.33691	NM_013893	ENSMUSG00000068341	Reg3d	INGAP|Ingaprp	regenerating islet-derived 3 delta	protein-coding	0.005000	0.472637	30(TCGTTTTAAAAG,-,0.00),32(GTTTTAAAAGTG,+,0.00)
mm_139421.1	chr17	53479365	53479565	+	1	NA	NA	NA	231	NM_025887	271457	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0.150000	0.731343	
mm_159994.1	chr6	116506171	116506371	+	1	NA	NA	NA	-245	NM_001011800	258019	Mm.67253	NM_001011800	ENSMUSG00000053251	Olfr212	4931403F16Rik|MOR119-4	olfactory receptor 212	protein-coding	0.040000	0.567164	-80(CCTTTTATAAAC,+,0.00)
mm_10010.1	chr1	191872087	191872287	-	1	NA	NA	NA	-34594	NM_009579	22782	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	0.005000	0.477612	
mm_129850.1	chr15	83170407	83170607	-	1	NA	NA	NA	1701	NM_029787	109754	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.010000	0.582090	
mm_52968.1	chr6	123138338	123138538	+	1	NA	NA	NA	15122	NM_001170333	26888	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0.030000	0.452736	
mm_16985.1	chr2	18048249	18048449	-	1	NA	NA	NA	100	NM_028317	72668	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113	SKI/DACH domain containing 1	protein-coding	0.040000	0.482587	
mm_23561.1	chr3	62444775	62444975	+	1	NA	NA	NA	62113	NM_028136	72162	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	0.000000	0.258706	-82(CTCTATATAAGT,-,0.00)
mm_140744.1	chr17	15830710	15830910	-	1	NA	NA	NA	-4224	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.070000	0.716418	
mm_141943.1	chr17	35055213	35055413	-	1	NA	NA	NA	-3722	NM_001190449	51793	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	0.015000	0.532338	
mm_29217.1	chr3	107091702	107091902	-	1	NA	NA	NA	-9765	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.020000	0.442786	
mm_107877.1	chr12	69985732	69985932	+	1	NA	NA	NA	1170	NM_022028	64010	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0.010000	0.393035	
mm_142888.1	chr17	51832572	51832772	-	1	NA	NA	NA	-25	NM_009122	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.125000	0.736318	-6(CCCTTTAAACGC,+,0.00),-5(CCTTTAAACGCC,+,0.00)
mm_145445.1	chr18	59239924	59240124	+	1	NA	NA	NA	64684	NM_001081328	78923	Mm.84007	NM_001081328	ENSMUSG00000058152	Chsy3	4833446K15Rik|AI662215	chondroitin sulfate synthase 3	protein-coding	0.000000	0.303483	
mm_76871.1	chr8	105529296	105529496	-	1	NA	NA	NA	10650	NM_008289	15484	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	0.010000	0.502488	
mm_144454.1	chr18	23352501	23352701	+	1	NA	NA	NA	42581	NM_001285813	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.020000	0.447761	
mm_170403.1	chr18	64081414	64081614	-	1	NA	NA	NA	-172845	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.050000	0.457711	
mm_127302.1	chr15	100227719	100227919	+	1	NA	NA	NA	-40	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.165000	0.800995	
mm_118394.1	chr13	118715611	118715811	-	1	NA	NA	NA	1012	NM_008002	14165	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	0.040000	0.537313	
mm_62985.1	chr7	120203907	120204107	+	1	NA	NA	NA	43	NM_026458	67928	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	0.100000	0.676617	
mm_144541.1	chr18	27336753	27336953	+	1	NA	NA	NA	-1223311	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.000000	0.343284	
mm_102029.1	chr11	51688542	51688742	-	1	NA	NA	NA	-8	NM_025319	66050	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	0.080000	0.641791	
mm_133612.1	chr16	91545617	91545817	+	1	NA	NA	NA	-1377	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.020000	0.537313	
mm_145168.1	chr18	46849947	46850147	+	1	NA	NA	NA	8	NM_029008	74574	Mm.26379	NM_029008	ENSMUSG00000024481	Lvrn	4833403I15Rik|APQ|Aqpep	laeverin	protein-coding	0.045000	0.611940	
mm_11520.1	chr2	32608909	32609109	+	1	NA	NA	NA	2024	NR_110347	50935	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.010000	0.557214	
mm_105514.1	chr11	106267512	106267712	-	1	NA	NA	NA	20	NM_031878	83796	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	0.035000	0.601990	
mm_69422.1	chr7	132762422	132762622	-	1	NA	NA	NA	14394	NM_001347630	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.005000	0.393035	
mm_93874.1	chr10	123196882	123197082	-	1	NA	NA	NA	37	NM_027604	14479	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	0.150000	0.771144	
mm_164767.1	chr17	86505122	86505322	-	1	NA	NA	NA	-218044	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.015000	0.497512	
mm_50498.1	chr6	49033032	49033232	+	1	NA	NA	NA	-3386	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.010000	0.507463	
mm_2292.1	chr1	91456682	91456882	+	1	NA	NA	NA	2546	NM_011066	18627	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.010000	0.562189	
mm_104954.1	chr11	100140985	100141185	-	1	NA	NA	NA	2614	NM_001313963	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.050000	0.592040	
mm_84709.1	chr9	72985271	72985471	-	1	NA	NA	NA	5	NM_001198789	546143	Mm.260946	NM_001198789	ENSMUSG00000086158	Ccpg1os	EG546143|Gm5918	cell cycle progression 1, opposite strand	protein-coding	0.090000	0.631841	
mm_169940.1	chr16	64949936	64950136	-	1	NA	NA	NA	97951	NM_178647	106143	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.020000	0.512438	
mm_78218.1	chr9	21544989	21545189	+	1	NA	NA	NA	-1805	NM_021531	59035	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0.020000	0.467662	
mm_16884.1	chr2	13010991	13011191	-	1	NA	NA	NA	-227	NM_153155	227580	Mm.229322	NM_153155	ENSMUSG00000049630	C1ql3	1110065A22Rik|AI661623|C1ql|C1qtnf13|CTRP13|K100	C1q-like 3	protein-coding	0.075000	0.726368	
mm_137225.1	chr17	24252487	24252687	+	1	NA	NA	NA	-1178	NM_007634	12449	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	0.005000	0.358209	
mm_27783.1	chr3	74126285	74126485	-	1	NA	NA	NA	-109108	NR_040450	100504692	Mm.394454	NR_040450	ENSMUSG00000104096	Gm20356	-	predicted gene, 20356	ncRNA	0.005000	0.512438	
mm_66617.1	chr7	45474188	45474388	-	1	NA	NA	NA	-7390	NM_007527	12028	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.000000	0.393035	
mm_7189.1	chr1	92902802	92903002	-	1	NA	NA	NA	4	NM_172850	241158	Mm.108280	NM_172850	ENSMUSG00000034212	Ankmy1	4930483I10Rik|ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding	0.035000	0.557214	
mm_47468.1	chr5	123671061	123671261	-	1	NA	NA	NA	13200	NM_019765	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.025000	0.537313	
mm_85101.1	chr9	94537982	94538182	-	1	NA	NA	NA	-1	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0.155000	0.771144	
mm_6225.1	chr1	66930149	66930349	-	1	NA	NA	NA	5117	NM_001113387	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.015000	0.517413	
mm_117044.1	chr13	58358719	58358919	-	1	NA	NA	NA	-3957	NM_175214	75050	Mm.446094	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	0.145000	0.771144	
mm_44247.1	chr5	5367042	5367242	-	1	NA	NA	NA	13109	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.035000	0.492537	
mm_116598.1	chr13	48546409	48546609	-	1	NA	NA	NA	-8237	NR_029725	387244		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.170000	0.766169	
mm_86706.1	chr10	18844918	18845118	+	1	NA	NA	NA	-53	NM_022032	64058	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	0.115000	0.741294	
mm_130316.1	chr15	97247211	97247411	-	1	NA	NA	NA	-24	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.170000	0.830846	27(CGGGATAAAAGG,-,0.00)
mm_146647.1	chr18	11050595	11050795	-	1	NA	NA	NA	-1815	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.045000	0.482587	
mm_169391.1	chr14	43312382	43312582	+	1	NA	NA	NA	35329	NM_027940	71826	Mm.335855	NM_027940	ENSMUSG00000095384	1700001F09Rik	Gm10377	RIKEN cDNA 1700001F09 gene	protein-coding	0.010000	0.467662	
mm_75119.1	chr8	34758958	34759158	-	1	NA	NA	NA	-48552	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.030000	0.457711	
mm_39666.1	chr5	25246689	25246889	+	1	NA	NA	NA	23896	NM_144908	231050	Mm.21814	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.005000	0.323383	-31(GCCTTTTAAAAG,-,0.00),-30(CCTTTTAAAAGG,+,0.00),-30(CCTTTTAAAAGG,-,0.00),-29(CTTTTAAAAGGT,+,0.00)
mm_131633.1	chr16	20188697	20188897	+	1	NA	NA	NA	-12563	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.005000	0.328358	
mm_23707.1	chr3	68868709	68868909	+	1	NA	NA	NA	-777	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.020000	0.542289	-34(GGCTATTTATGC,-,0.00)
mm_51854.1	chr6	90462498	90462698	+	1	NA	NA	NA	-28	NM_023184	66277	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.200000	0.800995	
mm_167391.1	chr8	94983935	94984135	+	1	NA	NA	NA	-364	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.015000	0.606965	
mm_92119.1	chr10	63338883	63339083	-	1	NA	NA	NA	52	NM_019812	93759	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0.155000	0.751244	
mm_141871.1	chr17	34836570	34836770	-	1	NA	NA	NA	233	NM_019442	54402	Mm.440064	NM_019442	ENSMUSG00000061207	Stk19	G11|RP1	serine/threonine kinase 19	protein-coding	0.065000	0.676617	
mm_148334.1	chr18	84243160	84243360	-	1	NA	NA	NA	155102	NM_146090	225791	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.010000	0.343284	
mm_82327.1	chr9	8693198	8693398	-	1	NA	NA	NA	47690	NR_110513	102634431	Mm.387913	NR_110513	ENSMUSG00000111602	Gm32014	-	predicted gene, 32014	ncRNA	0.005000	0.497512	
mm_135069.1	chr16	34239068	34239268	-	1	NA	NA	NA	-272165	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.020000	0.432836	
mm_68629.1	chr7	118139105	118139305	-	1	NA	NA	NA	-9580	NM_019419	54208	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0.000000	0.333333	
mm_91993.1	chr10	62071806	62072006	-	1	NA	NA	NA	39107	NM_027251	69894	Mm.294126	NM_027251	ENSMUSG00000020083	2010107G23Rik	AA545165	RIKEN cDNA 2010107G23 gene	protein-coding	0.050000	0.532338	
mm_20990.1	chr2	152226637	152226837	-	1	NA	NA	NA	-103	NM_007788	12995	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0.070000	0.552239	
mm_154224.1	chr19	59913972	59914172	-	1	NA	NA	NA	29292	NM_001033172	74998	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	0.010000	0.427861	
mm_154032.1	chr19	53460155	53460355	-	1	NA	NA	NA	4541	NR_028427	381232	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|ENSMUSG00000074788|Gm10758	myocardial infarction associated transcript 1	ncRNA	0.020000	0.492537	-84(CCTTTTATGTCA,+,0.00)
mm_32241.1	chr4	102429976	102430176	+	1	NA	NA	NA	-139984	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.010000	0.477612	
mm_46341.1	chr5	101922504	101922704	-	1	NA	NA	NA	147317	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.040000	0.552239	-90(TCATTTAAAGAC,+,0.00)
mm_32114.1	chr4	98978622	98978822	+	1	NA	NA	NA	-52232	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.010000	0.427861	
mm_108579.1	chr12	85012941	85013141	+	1	NA	NA	NA	16720	NM_178363	56531	Mm.153183	NM_178363	ENSMUSG00000021244	Ylpm1	A930013E17Rik|ZAP|Zap3	YLP motif containing 1	protein-coding	0.015000	0.527363	-83(GGACATAAAAAG,-,0.00)
mm_132286.1	chr16	33174849	33175049	+	1	NA	NA	NA	-10122	NM_176840	106326	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.000000	0.333333	
mm_92815.1	chr10	81430725	81430925	-	1	NA	NA	NA	-3652	NM_026756	18029	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.175000	0.845771	
mm_124775.1	chr15	7192808	7193008	+	1	NA	NA	NA	52366	NM_013584	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.005000	0.373134	
mm_133826.1	chr16	95900299	95900499	+	1	NA	NA	NA	-1686	NR_040485	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.025000	0.517413	
mm_126809.1	chr15	87654841	87655041	+	1	NA	NA	NA	29711	NM_134096	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.005000	0.522388	
mm_34302.1	chr4	141746703	141746903	+	1	NA	NA	NA	128	NM_001081408	75986	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	0.035000	0.656716	
mm_40875.1	chr5	74093036	74093236	+	1	NA	NA	NA	76	NR_145131	70036	Mm.46547	NR_015531	ENSMUSG00000053656	Dancr	2700023E23Rik	differentiation antagonizing non-protein coding RNA	ncRNA	0.090000	0.696517	
mm_153593.1	chr19	43717538	43717738	-	1	NA	NA	NA	27949	NM_053103	93685	Mm.248237	NM_053103	ENSMUSG00000025192	Entpd7	1810012B13Rik|1810020C02Rik|2810003F23Rik|LALP1|Lysal2	ectonucleoside triphosphate diphosphohydrolase 7	protein-coding	0.025000	0.507463	
mm_39428.1	chr5	16553395	16553595	+	1	NA	NA	NA	0	NM_001289460	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.025000	0.522388	
mm_69786.1	chr7	141094872	141095072	-	1	NA	NA	NA	5574	NM_023059	24058	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0.010000	0.562189	
mm_65891.1	chr7	30051286	30051486	-	1	NA	NA	NA	10	NM_011748	243906	Mm.347644	NM_011748	ENSMUSG00000053985	Zfp14	4732429I09Rik|Krox-9|Zfp-14|mKIAA1559	zinc finger protein 14	protein-coding	0.065000	0.616915	
mm_49663.1	chr6	31216858	31217058	+	1	NA	NA	NA	1516	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.065000	0.587065	72(TGGTTTTAAAAG,-,0.00),73(GGTTTTAAAAGC,-,0.00),74(GTTTTAAAAGCA,+,0.00)
mm_120873.1	chr14	75242231	75242431	+	1	NA	NA	NA	44	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.010000	0.512438	
mm_4749.1	chr1	182255225	182255425	+	1	NA	NA	NA	27434	NM_007853	13244	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.035000	0.611940	-3(CCTCATAGAGGG,+,0.00)
mm_121190.1	chr14	103049771	103049971	+	1	NA	NA	NA	2859	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.000000	0.348259	
mm_134896.1	chr16	29849537	29849737	-	1	NA	NA	NA	129487	NR_037689	328657	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.020000	0.477612	
mm_163400.1	chr12	72939796	72939996	+	1	NA	NA	NA	14	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	0.060000	0.646766	
mm_137977.1	chr17	33578040	33578240	+	1	NA	NA	NA	22433	NM_053214	17916	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0.005000	0.517413	
mm_80161.1	chr9	71157258	71157458	+	1	NA	NA	NA	5275	NM_001271843	64008	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.010000	0.432836	
mm_139852.1	chr17	69968952	69969152	+	1	NA	NA	NA	-21	NM_001347412	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.095000	0.636816	
mm_132809.1	chr16	45158968	45159168	+	1	NA	NA	NA	239	NM_026402	67841	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	0.080000	0.666667	
mm_79563.1	chr9	58129230	58129430	+	1	NA	NA	NA	-19	NM_009291	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.040000	0.641791	
mm_161584.1	chr16	32271746	32271946	+	1	NA	NA	NA	237	NM_183283	69576	Mm.432545	NM_183283	ENSMUSG00000046345	Smco1	2310010M20Rik	single-pass membrane protein with coiled-coil domains 1	protein-coding	0.015000	0.378109	50(GTTTTTAAATCC,+,0.00)
mm_153309.1	chr19	38025724	38025924	-	1	NA	NA	NA	17753	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.015000	0.452736	
mm_135949.1	chr16	74411704	74411904	-	1	NA	NA	NA	-892	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.065000	0.671642	
mm_149632.1	chr19	17222553	17222753	+	1	NA	NA	NA	116852	NM_001136484	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.020000	0.318408	
mm_149859.1	chr19	25097710	25097910	+	1	NA	NA	NA	98281	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.010000	0.497512	
mm_106775.1	chr12	4624805	4625005	+	1	NA	NA	NA	31897	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.005000	0.343284	
mm_18115.1	chr2	44996412	44996612	-	1	NA	NA	NA	26665	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.020000	0.432836	
mm_40037.1	chr5	33759235	33759435	+	1	NA	NA	NA	23369	NM_019694	56384	Mm.260538	NM_019694	ENSMUSG00000005299	Letm1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding	0.035000	0.492537	
mm_110720.1	chr12	69596721	69596921	-	1	NA	NA	NA	-13793	NM_001033236	207965	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0.000000	0.283582	
mm_48642.1	chr5	145231465	145231665	-	1	NA	NA	NA	-150	NM_001083958	72611	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	0.065000	0.606965	-16(CGCTAGATAAGG,-,0.00)
mm_55215.1	chr6	52225743	52225943	-	1	NA	NA	NA	1527	NM_010456	15405	Mm.4694	NM_010456	ENSMUSG00000038227	Hoxa9	D6a9|Hox-1.7	homeobox A9	protein-coding	0.110000	0.696517	
mm_17883.1	chr2	34961729	34961929	-	1	NA	NA	NA	-57	NM_001326601	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.010000	0.497512	
mm_138604.1	chr17	35567436	35567636	+	1	NA	NA	NA	51	NM_175148	69542	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	0.015000	0.587065	
mm_70799.1	chr8	22922184	22922384	+	1	NA	NA	NA	-52552	NM_001110783	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.000000	0.333333	
mm_47077.1	chr5	116632917	116633117	-	1	NA	NA	NA	-41200	NM_026886	68955	Mm.146779	NM_026886	ENSMUSG00000063919	Srrm4	1500001A10Rik|B230202K19Rik|bv|mKIAA1853|nSR100	serine/arginine repetitive matrix 4	protein-coding	0.025000	0.507463	
mm_75151.1	chr8	36175935	36176135	-	1	NA	NA	NA	73481	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.005000	0.497512	
mm_87787.1	chr10	60297276	60297476	+	1	NA	NA	NA	12915	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.020000	0.532338	
mm_16417.1	chr2	180170279	180170479	+	1	NA	NA	NA	-1209	NM_019822	56436	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	0.005000	0.437811	
mm_155402.1	chrX	73064145	73064345	+	1	NA	NA	NA	-542	NM_153169	245468	Mm.256249	NM_153169	ENSMUSG00000046287	Pnma3	-	paraneoplastic antigen MA3	protein-coding	0.070000	0.656716	
mm_157238.1	chrX	17571479	17571679	-	1	NA	NA	NA	428	NM_001313746	72018	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	0.025000	0.447761	
mm_79339.1	chr9	53367586	53367786	+	1	NA	NA	NA	-16337	NM_212445	68304	Mm.427519	NM_212445	ENSMUSG00000034487	Kdelc2	2010004J24Rik|4833410J10Rik|AW549401	KDEL (Lys-Asp-Glu-Leu) containing 2	protein-coding	0.030000	0.462687	
mm_147894.1	chr18	65222589	65222789	-	1	NA	NA	NA	-26172	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.015000	0.562189	
mm_136848.1	chr17	12788219	12788419	+	1	NA	NA	NA	-18613	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.000000	0.398010	
mm_35257.1	chr4	19878204	19878404	-	1	NA	NA	NA	44262	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.015000	0.393035	
mm_155046.1	chrX	42150679	42150879	+	1	NA	NA	NA	78	NM_021465	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.065000	0.587065	
mm_166474.1	chr5	143562061	143562261	+	1	NA	NA	NA	13455	NM_026050	67238	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0.035000	0.587065	
mm_80465.1	chr9	78113156	78113356	+	1	NA	NA	NA	18	NM_019987	56542	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	0.085000	0.676617	
mm_105561.1	chr11	106503201	106503401	-	1	NA	NA	NA	2310	NR_030703	100216537		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.005000	0.412935	
mm_16313.1	chr2	174302165	174302365	+	1	NA	NA	NA	4406	NM_001310085	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.015000	0.517413	
mm_104154.1	chr11	87108675	87108875	-	1	NA	NA	NA	-61	NM_175563	270906	Mm.132381	NM_175563	ENSMUSG00000020493	Prr11	B930067F20Rik	proline rich 11	protein-coding	0.055000	0.472637	
mm_19035.1	chr2	76969831	76970031	-	1	NA	NA	NA	12616	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.050000	0.626866	
mm_56547.1	chr6	99896744	99896944	-	1	NA	NA	NA	-170452	NM_001170419	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.000000	0.502488	
mm_95462.1	chr11	50382705	50382905	+	1	NA	NA	NA	5086	NM_001347487	59013	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.005000	0.398010	
mm_59528.1	chr7	27653791	27653991	+	1	NA	NA	NA	-33	NM_028417	73032	Mm.44095	NM_028417	ENSMUSG00000007944	Ttc9b	2900074C18Rik	tetratricopeptide repeat domain 9B	protein-coding	0.100000	0.711443	
mm_57738.1	chr6	128974934	128975134	-	1	NA	NA	NA	-5	NR_045009	100504591	Mm.441029	NR_045009		Gm15987	OTTMUSG00000028624	predicted gene 15987	ncRNA	0.000000	0.432836	
mm_15270.1	chr2	155195202	155195402	+	1	NA	NA	NA	-41231	NR_111891	67068	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	0.005000	0.303483	-15(GCCCTTTAATGC,-,0.00),-13(CCTTTAATGCAT,+,0.00)
mm_118912.1	chr14	26691524	26691724	+	1	NA	NA	NA	-21778	NM_178668	211948	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	0.005000	0.452736	
mm_123160.1	chr14	57133191	57133391	-	1	NA	NA	NA	320	NM_001271663	14623	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	0.095000	0.691542	
mm_25164.1	chr3	103058626	103058826	+	1	NA	NA	NA	441	NM_010937	18176	Mm.400954	NM_010937	ENSMUSG00000027852	Nras	AV095280|N-ras	neuroblastoma ras oncogene	protein-coding	0.035000	0.467662	
mm_48537.1	chr5	142904605	142904805	-	1	NA	NA	NA	2049	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.035000	0.542289	
mm_52317.1	chr6	108836209	108836409	+	1	NA	NA	NA	7668	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.025000	0.517413	
mm_84371.1	chr9	64951452	64951652	-	1	NA	NA	NA	55	NM_144813	214111	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	0.025000	0.512438	
mm_6841.1	chr1	84233404	84233604	-	1	NA	NA	NA	-14543	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.373134	
mm_41731.1	chr5	102481690	102481890	+	1	NA	NA	NA	399	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.045000	0.626866	
mm_84246.1	chr9	62374607	62374807	-	1	NA	NA	NA	33364	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.010000	0.567164	
mm_61551.1	chr7	79392226	79392426	+	1	NA	NA	NA	-12	NM_145946	208836	Mm.349493	NM_145946	ENSMUSG00000039187	Fanci	-	Fanconi anemia, complementation group I	protein-coding	0.050000	0.557214	
mm_121740.1	chr14	18545224	18545424	-	1	NA	NA	NA	-213480	NM_009455	22194	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	0.035000	0.547264	-61(AGCTTTAAAAAG,-,0.00),-60(GCTTTAAAAAGC,+,0.00),-59(CTTTAAAAAGCA,+,0.00)
mm_41606.1	chr5	96374337	96374537	+	1	NA	NA	NA	482	NM_175473	231470	Mm.291120	NM_175473	ENSMUSG00000034687	Fras1	E130113P14Rik|bl|mKIAA1500	Fraser extracellular matrix complex subunit 1	protein-coding	0.085000	0.646766	
mm_51425.1	chr6	78427315	78427515	+	1	NA	NA	NA	1432	NM_009042	19692	Mm.142731	NM_009042	ENSMUSG00000059654	Reg1	-	regenerating islet-derived 1	protein-coding	0.005000	0.467662	
mm_32830.1	chr4	117585206	117585406	+	1	NA	NA	NA	34941	NM_080469	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.005000	0.398010	
mm_172694.1	chr8	61364387	61364587	-	1	NA	NA	NA	-75615	NR_045475	69279	Mm.417857	NR_045475	ENSMUSG00000099419	1700001D01Rik	-	RIKEN cDNA 1700001D01 gene	ncRNA	0.010000	0.338308	-82(CCATATTTAAGG,-,0.00)
mm_54238.1	chr6	28243679	28243879	-	1	NA	NA	NA	17822	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.000000	0.393035	-18(AACTCTAAAAGA,-,0.00)
mm_10710.1	chr2	22774352	22774552	+	1	NA	NA	NA	125	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.070000	0.656716	
mm_26602.1	chr3	152209814	152210014	+	1	NA	NA	NA	169	NM_027287	67035	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0.065000	0.572139	-80(CGTTTTTAAAGG,-,0.00),-79(GTTTTTAAAGGA,+,0.00)
mm_57415.1	chr6	124905001	124905201	-	1	NA	NA	NA	6604	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.015000	0.547264	
mm_157041.1	chrX	7976453	7976653	-	1	NA	NA	NA	-8643	NM_008089	14460	Mm.335973	NM_008089	ENSMUSG00000031162	Gata1	Gata-1|Gf-1|eryf1	GATA binding protein 1	protein-coding	0.020000	0.507463	
mm_64504.1	chr7	143476078	143476278	+	1	NA	NA	NA	1062	NM_001042760	18400	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0.025000	0.606965	
mm_144473.1	chr18	23883443	23883643	+	1	NA	NA	NA	-71145	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.025000	0.497512	
mm_170360.1	chr1	85270069	85270269	-	1	NA	NA	NA	397	NM_175219	620078	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik|OTTMUSG00000029174	RIKEN cDNA C130026I21 gene	protein-coding	0.005000	0.547264	
mm_27035.1	chr3	26330946	26331146	-	1	NA	NA	NA	863	NM_138666	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.025000	0.452736	
mm_78029.1	chr9	13805926	13806126	+	1	NA	NA	NA	21027	NR_037622	74360	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding	0.000000	0.328358	50(CCTTATATATGT,+,0.00)
mm_48163.1	chr5	137152742	137152942	-	1	NA	NA	NA	-36635	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.472637	
mm_170402.1	chr18	63880682	63880882	-	1	NA	NA	NA	172087	NM_001014981	104082	Mm.30850	NM_001014981	ENSMUSG00000040560	Wdr7	AI462727|TRAG|mKIAA0541	WD repeat domain 7	protein-coding	0.030000	0.502488	
mm_159909.1	chr6	47595294	47595494	-	1	NA	NA	NA	-364	NM_001146689	14056	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.090000	0.701493	
mm_168009.1	chrY	11858178	11858378	+	1	NA	NA	NA	-523711	NM_001199332	100041550	Mm.485768	NM_001199332	ENSMUSG00000095520	Gm20877	-	predicted gene, 20877	protein-coding	0.005000	0.467662	
mm_156881.1	chrX	166238940	166239140	+	1	NA	NA	NA	97	NM_001177962	14758	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	0.090000	0.721393	
mm_146700.1	chr18	13122386	13122586	-	1	NA	NA	NA	115496	NM_153087	225192	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0.025000	0.527363	
mm_38513.1	chr4	141398136	141398336	-	1	NA	NA	NA	-137	NM_001146307	12733	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	0.020000	0.557214	
mm_57083.1	chr6	122582463	122582663	-	1	NA	NA	NA	19881	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.020000	0.462687	
mm_15676.1	chr2	163547040	163547240	+	1	NA	NA	NA	-15	NM_008261	15378	Mm.202383	NM_008261	ENSMUSG00000017950	Hnf4a	HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14	hepatic nuclear factor 4, alpha	protein-coding	0.020000	0.646766	
mm_107585.1	chr12	44930407	44930607	+	1	NA	NA	NA	143976	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.000000	0.472637	-33(GCTTTAAGACCC,+,0.00)
mm_162937.1	chr10	127705186	127705386	+	1	NA	NA	NA	30	NM_001081219	432516	Mm.90450	NM_001081219	ENSMUSG00000025401	Myo1a	BBM-I|Myhl	myosin IA	protein-coding	0.010000	0.507463	
mm_14952.1	chr2	151996431	151996631	+	1	NA	NA	NA	20	NM_027172	69698	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	0.070000	0.616915	
mm_136810.1	chr17	12390196	12390396	+	1	NA	NA	NA	11687	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.010000	0.482587	
mm_126729.1	chr15	85634778	85634978	+	1	NA	NA	NA	-53057	NM_009528	22422	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	0.070000	0.601990	
mm_110236.1	chr12	30373229	30373429	-	1	NA	NA	NA	46	NM_172951	268534	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	0.100000	0.736318	
mm_84430.1	chr9	65885012	65885212	-	1	NA	NA	NA	61	NM_001170907	56404	Mm.208379	NM_019797	ENSMUSG00000032386	Trip4	4930558E03Rik|ASC-1|Asc1|BB191711	thyroid hormone receptor interactor 4	protein-coding	0.100000	0.641791	
mm_147646.1	chr18	60443538	60443738	-	1	NA	NA	NA	58345	NM_134133	106878	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.000000	0.343284	
mm_100058.1	chr11	115277325	115277525	+	1	NA	NA	NA	-456	NM_007997	14149	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	-	ferredoxin reductase	protein-coding	0.040000	0.467662	
mm_170790.1	chr2	175110010	175110210	-	1	NA	NA	NA	-42341	NM_001085546	664987		NM_001085546	ENSMUSG00000078905	Gm14393	OTTMUSG00000016546	predicted gene 14393	protein-coding	0.015000	0.487562	
mm_100975.1	chr11	6896028	6896228	-	1	NA	NA	NA	-167361	NM_009622	432530	Mm.259733	NM_009622	ENSMUSG00000020431	Adcy1	AC1|D11Bwg1392e|I-AC|brl|mKIAA4070	adenylate cyclase 1	protein-coding	0.015000	0.492537	16(GGGCCTAAAGGC,-,0.00)
mm_81088.1	chr9	106327623	106327823	+	1	NA	NA	NA	-40909	NM_153459	235584	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.010000	0.597015	
mm_145130.1	chr18	44634065	44634265	+	1	NA	NA	NA	-27500	NR_026853	626275	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	0.015000	0.552239	
mm_149329.1	chr19	10842918	10843118	+	1	NA	NA	NA	474	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.080000	0.651741	
mm_39765.1	chr5	30013253	30013453	+	1	NA	NA	NA	239	NM_031168	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.025000	0.567164	
mm_124235.1	chr14	101463120	101463320	-	1	NA	NA	NA	145971	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.040000	0.502488	
mm_13903.1	chr2	120481862	120482062	+	1	NA	NA	NA	5053	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.025000	0.567164	
mm_45019.1	chr5	38561063	38561263	-	1	NA	NA	NA	432	NM_011715	22388	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0.060000	0.601990	
mm_56000.1	chr6	86472105	86472305	-	1	NA	NA	NA	8625	NR_131125	320486	Mm.391625	NR_131125	ENSMUSG00000085589	A430078I02Rik	T25621	RIKEN cDNA A430078I02 gene	ncRNA	0.095000	0.631841	
mm_59854.1	chr7	29943895	29944095	+	1	NA	NA	NA	7898	NM_178384	72723	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77	zinc finger protein 74	protein-coding	0.005000	0.452736	
mm_25485.1	chr3	109123185	109123385	+	1	NA	NA	NA	136	NM_172685	229731	Mm.33574	NM_172685	ENSMUSG00000040322	Slc25a24	2610016M12Rik	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	protein-coding	0.110000	0.711443	
mm_114771.1	chr13	88821499	88821699	+	1	NA	NA	NA	127	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.100000	0.681592	
mm_121147.1	chr14	101899284	101899484	+	1	NA	NA	NA	58761	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.005000	0.452736	
mm_125182.1	chr15	32244719	32244919	+	1	NA	NA	NA	6	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding	0.125000	0.776119	
mm_65057.1	chr7	18792156	18792356	-	1	NA	NA	NA	5954	NR_024208	20958	Mm.423480	NR_024208	ENSMUSG00000109116	Sycp1-ps1	Sycp1-rs	synaptonemal complex protein 1, pseudogene 1	pseudo	0.010000	0.522388	
mm_7169.1	chr1	92114517	92114717	-	1	NA	NA	NA	65724	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.005000	0.437811	
mm_69037.1	chr7	126799045	126799245	-	1	NA	NA	NA	33	NM_001177307	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.085000	0.646766	-71(GCCTTTAAATGT,-,0.00)
mm_145903.1	chr18	65698232	65698432	+	1	NA	NA	NA	64	NM_177028	319888	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0.025000	0.462687	
mm_109754.1	chr12	117742666	117742866	+	1	NA	NA	NA	-101095	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.000000	0.422886	
mm_137677.1	chr17	28801697	28801897	+	1	NA	NA	NA	671	NM_001081315	268936	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0.065000	0.601990	
mm_51382.1	chr6	76005219	76005419	+	1	NA	NA	NA	-1237398	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.005000	0.497512	
mm_110299.1	chr12	32770760	32770960	-	1	NA	NA	NA	-49475	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.020000	0.457711	
mm_20485.1	chr2	129801387	129801587	-	1	NA	NA	NA	-28	NR_029452	654409	Mm.305555	NR_029452		4932416H05Rik	-	RIKEN cDNA 4932416H05 gene	ncRNA	0.085000	0.681592	
mm_141384.1	chr17	29080739	29080939	-	1	NA	NA	NA	-1713	NR_036469	100504267	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|OTTMUSG00000031656|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0.015000	0.577114	
mm_63071.1	chr7	122162326	122162526	+	1	NA	NA	NA	2991	NM_011121	18817	Mm.16525	NM_011121	ENSMUSG00000030867	Plk1	Plk|STPK13	polo-like kinase 1	protein-coding	0.010000	0.442786	6(GTGCCTAAAAGA,-,0.00)
mm_166562.1	chr6	47584079	47584279	-	1	NA	NA	NA	10851	NM_007971	14056	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.015000	0.422886	
mm_146666.1	chr18	12195043	12195243	-	1	NA	NA	NA	26413	NM_029623	76482	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1	RIKEN cDNA 3110002H16 gene	protein-coding	0.025000	0.482587	
mm_149140.1	chr19	9003722	9003922	+	1	NA	NA	NA	-14082	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.000000	0.402985	3(ACACTTAAAAGG,-,0.00)
mm_44434.1	chr5	21055821	21056021	-	1	NA	NA	NA	-124	NM_011203	19248	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.125000	0.746269	
mm_106280.1	chr11	118145691	118145891	-	1	NA	NA	NA	-16572	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.025000	0.517413	
mm_25854.1	chr3	129619016	129619216	+	1	NA	NA	NA	86730	NM_130450	170439	Mm.314113	NM_130450	ENSMUSG00000041220	Elovl6	C77826|FAE|LCE	ELOVL family member 6, elongation of long chain fatty acids (yeast)	protein-coding	0.015000	0.373134	
mm_145432.1	chr18	58836097	58836297	+	1	NA	NA	NA	-166	NM_175506	240322	Mm.71963	NM_175506	ENSMUSG00000053441	Adamts19	4831407I23Rik|AU015154|D230034E10Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	protein-coding	0.050000	0.601990	
mm_17465.1	chr2	28557965	28558165	-	1	NA	NA	NA	5338	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.020000	0.507463	
mm_156779.1	chrX	161297700	161297900	+	1	NA	NA	NA	135050	NM_001290651	107815	Mm.159173	NM_133194	ENSMUSG00000000037	Scml2	4932420G07Rik	sex comb on midleg-like 2 (Drosophila)	protein-coding	0.050000	0.482587	
mm_111997.1	chr12	110696275	110696475	-	1	NA	NA	NA	20	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.135000	0.726368	32(CTCTATATAAGG,-,0.00),34(CTATATAAGGCC,+,0.00)
mm_132432.1	chr16	35857081	35857281	+	1	NA	NA	NA	14201	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.030000	0.527363	
mm_18720.1	chr2	72630303	72630503	-	1	NA	NA	NA	-73107	NR_040503	74541	Mm.410774	NR_040503	ENSMUSG00000085252	8430437L04Rik	-	RIKEN cDNA 8430437L04 gene	ncRNA	0.015000	0.417910	
mm_164053.1	chr14	103033636	103033836	+	1	NA	NA	NA	67	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.015000	0.477612	
mm_39973.1	chr5	32241077	32241277	+	1	NA	NA	NA	2093	NM_001081407	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0.005000	0.537313	
mm_81894.1	chr9	119444867	119445067	+	1	NA	NA	NA	44	NM_172456	208194	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	0.115000	0.671642	
mm_75638.1	chr8	64849754	64849954	-	1	NA	NA	NA	70	NM_178633	77113	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0.190000	0.830846	
mm_57113.1	chr6	122595833	122596033	-	1	NA	NA	NA	6511	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.030000	0.507463	
mm_135703.1	chr16	52468442	52468642	-	1	NA	NA	NA	-15461	NM_001331110	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.462687	
mm_155690.1	chrX	94123122	94123322	+	1	NA	NA	NA	185	NM_011768	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	0.100000	0.736318	
mm_67606.1	chr7	83794731	83794931	-	1	NA	NA	NA	8	NM_029335	75556	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	0.045000	0.562189	
mm_115163.1	chr13	107687309	107687509	+	1	NA	NA	NA	12	NR_045900	72257	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.045000	0.552239	
mm_99143.1	chr11	100415643	100415843	+	1	NA	NA	NA	49	NM_001163481	14230	Mm.3894	NM_010221	ENSMUSG00000001555	Fkbp10	AI325255|FKBP-10|FKBP-65|FKBP65|Fkbp-rs1|Fkbp1-rs|Fkbp6|Fkbprp	FK506 binding protein 10	protein-coding	0.055000	0.686567	
mm_99410.1	chr11	102268674	102268874	+	1	NA	NA	NA	-49	NM_148953	217217	Mm.216432	NM_148953	ENSMUSG00000034768	Asb16	-	ankyrin repeat and SOCS box-containing 16	protein-coding	0.015000	0.582090	-83(GCCTATTTATAG,-,0.00),-81(CTATTTATAGCC,+,0.00)
mm_124916.1	chr15	11971210	11971410	+	1	NA	NA	NA	4248	NR_040447	73339	Mm.231975	NR_040447	ENSMUSG00000099349	1700047G03Rik	-	RIKEN cDNA 1700047G03 gene	ncRNA	0.015000	0.378109	
mm_54924.1	chr6	47813421	47813621	-	1	NA	NA	NA	-9	NM_009787	12304	Mm.2442	NM_009787	ENSMUSG00000025823	Pdia4	AI987846|Cai|ERp-72|Erp72	protein disulfide isomerase associated 4	protein-coding	0.115000	0.701493	
mm_165740.1	chr3	107215947	107216147	+	1	NA	NA	NA	5685	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.482587	
mm_122428.1	chr14	44989760	44989960	-	1	NA	NA	NA	1749	NM_008964	19217	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.020000	0.522388	
mm_132603.1	chr16	38562713	38562913	+	1	NA	NA	NA	-1	NM_001205287	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.095000	0.681592	
mm_30233.1	chr3	146107896	146108096	-	1	NA	NA	NA	40	NM_172864	242253	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik	WD repeat domain 63	protein-coding	0.040000	0.482587	
mm_31509.1	chr4	53631413	53631613	+	1	NA	NA	NA	42	NM_001195284	319636	Mm.103464	NM_176966	ENSMUSG00000054752	Fsd1l	A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl|OTTMUSG00000007002	fibronectin type III and SPRY domain containing 1-like	protein-coding	0.115000	0.686567	
mm_149060.1	chr19	8839433	8839633	+	1	NA	NA	NA	205	NM_008144	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.010000	0.532338	
mm_24307.1	chr3	89394195	89394395	+	1	NA	NA	NA	5	NR_040404	545539	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	ENSMUSG00000074466|OTTMUSG00000021274	predicted gene 15417	ncRNA	0.040000	0.597015	
mm_52832.1	chr6	121365113	121365313	+	1	NA	NA	NA	18516	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.020000	0.597015	
mm_107904.1	chr12	70937802	70938002	+	1	NA	NA	NA	45	NM_019785	56444	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0.120000	0.726368	
mm_76824.1	chr8	104624096	104624296	-	1	NA	NA	NA	200	NM_007663	12556	Mm.19423	NM_007663	ENSMUSG00000031881	Cdh16	-	cadherin 16	protein-coding	0.015000	0.582090	
mm_95402.1	chr11	49794071	49794271	+	1	NA	NA	NA	16	NM_013529	14584	Mm.24402	NM_013529	ENSMUSG00000020363	Gfpt2	AI480523|GFAT2	glutamine fructose-6-phosphate transaminase 2	protein-coding	0.080000	0.676617	-28(GGCTATAAGGGC,-,0.00)
mm_112892.1	chr13	20885047	20885247	+	1	NA	NA	NA	91034	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.398010	-18(GCCTCTATATGC,-,0.00)
mm_118560.1	chr14	17981717	17981917	+	1	NA	NA	NA	173	NM_009380	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.025000	0.477612	
mm_155992.1	chrX	106149564	106149764	+	1	NA	NA	NA	6389	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.010000	0.462687	39(CCACATAAAAGC,-,0.00)
mm_172162.1	chr6	44792887	44793087	+	1	NA	NA	NA	-267074	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.045000	0.472637	
mm_71395.1	chr8	46163642	46163842	+	1	NA	NA	NA	-5814	NM_025747	66756	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430|mKIAA1430	cilia and flagella associated protein 97	protein-coding	0.145000	0.721393	
mm_107962.1	chr12	72735763	72735963	+	1	NA	NA	NA	-25348	NM_008910	19042	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.020000	0.487562	
mm_12338.1	chr2	69722719	69722919	+	1	NA	NA	NA	-269	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.080000	0.616915	
mm_56627.1	chr6	112802054	112802254	-	1	NA	NA	NA	-105484	NM_001167730	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.005000	0.363184	
mm_145585.1	chr18	60985576	60985776	+	1	NA	NA	NA	22122	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.020000	0.487562	
mm_169902.1	chr16	52083763	52083963	+	1	NA	NA	NA	52314	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.000000	0.522388	
mm_82847.1	chr9	31170451	31170651	-	1	NA	NA	NA	-38752	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.025000	0.512438	-60(CCTTATATAGCT,+,0.00)
mm_69393.1	chr7	132154523	132154723	-	1	NA	NA	NA	118	NM_018867	55987	Mm.471654	NM_018867	ENSMUSG00000030862	Cpxm2	4632435C11Rik|CPX-2|Cpx2	carboxypeptidase X 2 (M14 family)	protein-coding	0.100000	0.751244	
mm_136315.1	chr16	91728672	91728872	-	1	NA	NA	NA	30	NM_026994	66609	Mm.109823	NM_026994	ENSMUSG00000058240	Cryzl1	2210407J23Rik|2410006O11Rik|QOH-1	crystallin, zeta (quinone reductase)-like 1	protein-coding	0.055000	0.557214	
mm_98007.1	chr11	84179758	84179958	+	1	NA	NA	NA	-12382	NM_001037932	628813	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690|OTTMUSG00000000997	predicted gene 11437	protein-coding	0.140000	0.786070	
mm_87850.1	chr10	61031188	61031388	+	1	NA	NA	NA	-15	NR_040638	327760	Mm.23529	NR_040638	ENSMUSG00000093568	Gm20611	4930565A17	predicted gene 20611	ncRNA	0.000000	0.442786	
mm_76081.1	chr8	79356377	79356577	-	1	NA	NA	NA	42991	NM_008539	17125	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.040000	0.517413	
mm_118830.1	chr14	25607324	25607524	+	1	NA	NA	NA	3911	NM_001309430	100188919	Mm.473810	NM_001309430		Israa	-	immune system released activating agent	protein-coding	0.110000	0.711443	
mm_34217.1	chr4	140971797	140971997	+	1	NA	NA	NA	10626	NM_023374	67680	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.035000	0.592040	
mm_65147.1	chr7	19586356	19586556	-	1	NA	NA	NA	9169	NM_022409	63872	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0.170000	0.751244	
mm_143795.1	chr17	82410799	82410999	-	1	NA	NA	NA	667326	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0.040000	0.412935	
mm_79396.1	chr9	54917213	54917413	+	1	NA	NA	NA	23	NM_177351	235386	Mm.259334	NM_177351	ENSMUSG00000035878	Hykk	Agphd1|C630028N24Rik	hydroxylysine kinase 1	protein-coding	0.085000	0.666667	
mm_98920.1	chr11	98348331	98348531	+	1	NA	NA	NA	25	NM_144828	19049	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0.060000	0.601990	-34(CTCCCTTAAAAG,-,0.00),-33(TCCCTTAAAAGT,-,0.00),-32(CCCTTAAAAGTC,+,0.00),-31(CCTTAAAAGTCC,+,0.00)
mm_109979.1	chr12	12940506	12940706	-	1	NA	NA	NA	1230	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.005000	0.582090	
mm_73539.1	chr8	108703850	108704050	+	1	NA	NA	NA	-10694	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.150000	0.786070	
mm_94886.1	chr11	27322207	27322407	+	1	NA	NA	NA	537199	NR_002890	654472	Mm.347777	NR_002890		Gm12070	OTTMUSG00000005300	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.005000	0.383085	
mm_149554.1	chr19	12633214	12633414	+	1	NA	NA	NA	6	NM_145935	107146	Mm.39974	NM_145935	ENSMUSG00000063683	Glyat	A330009E03Rik|ACGNAT|AI195249|AI315345|CAT|GAT	glycine-N-acyltransferase	protein-coding	0.010000	0.452736	
mm_42758.1	chr5	120952660	120952860	+	1	NA	NA	NA	37942	NM_133893	100535	Mm.247620	NM_133893	ENSMUSG00000032623	Oas1d	AA536864|C85127|oasl8	2'-5' oligoadenylate synthetase 1D	protein-coding	0.025000	0.537313	
mm_10116.1	chr2	3723675	3723875	+	1	NA	NA	NA	10317	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.020000	0.398010	66(CCTCTTAAGGCT,+,0.00)
mm_113390.1	chr13	33039965	33040165	+	1	NA	NA	NA	12651	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	0.005000	0.492537	
mm_118407.1	chr13	119488262	119488462	-	1	NA	NA	NA	22	NR_027974	67304	Mm.474382	NM_026084	ENSMUSG00000074635	3110070M22Rik	-	RIKEN cDNA 3110070M22 gene	ncRNA	0.165000	0.776119	
mm_146593.1	chr18	9414647	9414847	-	1	NA	NA	NA	35403	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.005000	0.308458	
mm_42046.1	chr5	108461320	108461520	+	1	NA	NA	NA	88	NM_172716	69587	Mm.261218	NM_172716	ENSMUSG00000033623	Pcgf3	2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3	polycomb group ring finger 3	protein-coding	0.120000	0.746269	
mm_63176.1	chr7	125418613	125418813	+	1	NA	NA	NA	-25907	NM_029842	77035	Mm.307239	NM_029842	ENSMUSG00000030752	Kdm8	3110005O21Rik|Jmjd5	lysine (K)-specific demethylase 8	protein-coding	0.010000	0.552239	
mm_53763.1	chr6	145807114	145807314	+	1	NA	NA	NA	-1169	NM_027760	71323	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.015000	0.487562	
mm_69361.1	chr7	130519885	130520085	-	1	NA	NA	NA	384	NM_001029895	11907	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0.100000	0.711443	
mm_8611.1	chr1	156035950	156036150	-	1	NA	NA	NA	14	NM_001160182	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.140000	0.681592	
mm_158591.1	chrX	150954762	150954962	-	1	NA	NA	NA	62431	NM_001168600	237107	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	0.005000	0.502488	
mm_82225.1	chr9	3026596	3026796	-	1	NA	NA	NA	12047	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.015000	0.323383	
mm_89177.1	chr10	86344458	86344658	+	1	NA	NA	NA	44146	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.020000	0.577114	
mm_129500.1	chr15	78855427	78855627	-	1	NA	NA	NA	2	NM_025622	107753	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	0.010000	0.502488	
mm_63080.1	chr7	122219601	122219801	+	1	NA	NA	NA	205	NM_027363	70261	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.050000	0.616915	
mm_51072.1	chr6	66896316	66896516	+	1	NA	NA	NA	19	NM_001177556	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.155000	0.796020	
mm_57433.1	chr6	124914585	124914785	-	1	NA	NA	NA	-2980	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.000000	0.537313	
mm_99028.1	chr11	98942292	98942492	+	1	NA	NA	NA	2681	NM_001177303	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.015000	0.611940	
mm_164594.1	chr17	27444858	27445058	-	1	NA	NA	NA	58575	NM_001013385	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.000000	0.492537	-63(CCATTTAAACAA,+,0.00)
mm_163291.1	chr11	118248487	118248687	-	1	NA	NA	NA	5	NM_001112699	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.140000	0.776119	
mm_115183.1	chr13	108449642	108449842	+	1	NA	NA	NA	133405	NM_178683	218581	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.000000	0.388060	
mm_119290.1	chr14	34673809	34674009	+	1	NA	NA	NA	-19	NM_001004436	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.130000	0.706468	
mm_25660.1	chr3	121723459	121723659	+	1	NA	NA	NA	22	NM_010171	14066	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0.140000	0.731343	18(CCCTTTATAACG,+,0.00)
mm_138652.1	chr17	35867660	35867860	+	1	NA	NA	NA	1145	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.020000	0.582090	
mm_69160.1	chr7	127195866	127196066	-	1	NA	NA	NA	111	NM_001285907	70233	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0.075000	0.547264	
mm_133949.1	chr16	3976427	3976627	-	1	NA	NA	NA	105	NM_175547	268857	Mm.215994	NM_175547	ENSMUSG00000049871	Nlrc3	CLR16.2|D230007K08Rik|mFLJ00348	NLR family, CARD domain containing 3	protein-coding	0.005000	0.572139	
mm_150882.1	chr19	45076819	45077019	+	1	NA	NA	NA	780	NM_178929	107250	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.105000	0.711443	
mm_87593.1	chr10	57512387	57512587	+	1	NA	NA	NA	20042	NM_019760	56442	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	0.005000	0.268657	
mm_62000.1	chr7	91176684	91176884	+	1	NA	NA	NA	85998	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.005000	0.328358	
mm_44504.1	chr5	23922577	23922777	-	1	NA	NA	NA	70444	NR_028536	100217436		NR_028536		Snord93	Gm22397|MBII-336	small nucleolar RNA, C/D box 93	snoRNA	0.005000	0.557214	
mm_86986.1	chr10	25476151	25476351	+	1	NA	NA	NA	60021	NM_001195596	100504474	Mm.46323	NM_001195596	ENSMUSG00000096546	Smlr1	2010003K15Rik	small leucine-rich protein 1	protein-coding	0.025000	0.363184	
mm_163668.1	chr13	80883283	80883483	+	1	NA	NA	NA	-39	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.090000	0.636816	-5(GCTCTTAAAGTG,+,0.00)
mm_23205.1	chr3	41555634	41555834	+	1	NA	NA	NA	0	NM_001130184	269424	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.045000	0.592040	
mm_103319.1	chr11	73196660	73196860	-	1	NA	NA	NA	2259	NM_031251	83429	Mm.259852	NM_031251	ENSMUSG00000005949	Ctns	AI195360|AW049661	cystinosis, nephropathic	protein-coding	0.000000	0.472637	
mm_70835.1	chr8	23167701	23167901	+	1	NA	NA	NA	14530	NM_029002	74561	Mm.290028	NM_029002	ENSMUSG00000063672	Nkx6-3	9130417I07Rik|Nkx6.3	NK6 homeobox 3	protein-coding	0.015000	0.522388	
mm_116106.1	chr13	28949062	28949262	-	1	NA	NA	NA	4520	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.020000	0.308458	-77(GCCTTTTAAGAG,-,0.00),-76(CCTTTTAAGAGG,+,0.00),-75(CTTTTAAGAGGC,+,0.00)
mm_78073.1	chr9	15493466	15493666	+	1	NA	NA	NA	-11929	NM_133214	170748	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	0.180000	0.820896	
mm_37980.1	chr4	133601780	133601980	-	1	NA	NA	NA	288	NM_018754	55948	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	0.050000	0.616915	
mm_23638.1	chr3	66985867	66986067	+	1	NA	NA	NA	295	NM_025822	66880	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	0.110000	0.761194	
mm_127478.1	chr15	101273985	101274185	+	1	NA	NA	NA	7239	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.050000	0.616915	
mm_25761.1	chr3	124320972	124321172	+	1	NA	NA	NA	35	NM_146140	229801	Mm.165810	NM_146140	ENSMUSG00000044528	Tram1l1	A830091N21Rik	translocation associated membrane protein 1-like 1	protein-coding	0.120000	0.726368	
mm_113654.1	chr13	42307177	42307377	+	1	NA	NA	NA	5801	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.020000	0.432836	
mm_36955.1	chr4	109132973	109133173	-	1	NA	NA	NA	-15037	NM_001134791	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.010000	0.467662	
mm_160538.1	chr9	40101138	40101338	-	1	NA	NA	NA	250	NM_146608	258601	Mm.377587	NM_146608	ENSMUSG00000045812	Olfr984	MOR239-6	olfactory receptor 984	protein-coding	0.015000	0.482587	
mm_118162.1	chr13	105294222	105294422	-	1	NA	NA	NA	-1308	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.125000	0.751244	
mm_112828.1	chr13	20817703	20817903	+	1	NA	NA	NA	23690	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.015000	0.353234	
mm_8368.1	chr1	150653783	150653983	-	1	NA	NA	NA	-187718	NM_001110146	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.005000	0.373134	
mm_170435.1	chr18	78862312	78862512	+	1	NA	NA	NA	246979	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.000000	0.348259	
mm_27980.1	chr3	81958516	81958716	-	1	NA	NA	NA	17112	NM_019911	56720	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	0.010000	0.323383	
mm_130101.1	chr15	89429119	89429319	-	1	NA	NA	NA	708	NR_037154	12651	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	0.045000	0.676617	
mm_147521.1	chr18	52529507	52529707	-	1	NA	NA	NA	114	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.065000	0.577114	
mm_146656.1	chr18	11052776	11052976	-	1	NA	NA	NA	-309	NR_105023	68434	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0.065000	0.621891	
mm_110102.1	chr12	26187468	26187668	-	1	NA	NA	NA	22937	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA	0.020000	0.542289	
mm_32063.1	chr4	97777702	97777902	+	1	NA	NA	NA	176	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.055000	0.542289	
mm_97330.1	chr11	77078391	77078591	+	1	NA	NA	NA	-54	NM_001012309	237859	Mm.156195	NM_001012309	ENSMUSG00000037958	Nsrp1	8030451K07|AI851076|AL022898|Ccdc55|NSpr70|NSrp70	nuclear speckle regulatory protein 1	protein-coding	0.115000	0.606965	
mm_108178.1	chr12	76417430	76417630	+	1	NA	NA	NA	-69	NM_001163103	210762	Mm.292354	NM_001163103	ENSMUSG00000052221	Ppp1r36	Gm70	protein phosphatase 1, regulatory subunit 36	protein-coding	0.115000	0.736318	
mm_119249.1	chr14	33923391	33923591	+	1	NA	NA	NA	-96	NM_145741	14560	Mm.432071	NM_145741	ENSMUSG00000021943	Gdf10	Bmp3b	growth differentiation factor 10	protein-coding	0.145000	0.786070	
mm_165373.1	chr2	128306878	128307078	+	1	NA	NA	NA	122373	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.020000	0.527363	
mm_170898.1	chr2	29980075	29980275	+	1	NA	NA	NA	14615	NM_001309460	20740	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	0.015000	0.492537	
mm_141365.1	chr17	28942139	28942339	-	1	NA	NA	NA	23	NM_153390	69307	Mm.107605	NM_153390	ENSMUSG00000045378	Pxt1	1700001G18Rik|Stepp	peroxisomal, testis specific 1	protein-coding	0.030000	0.572139	
mm_54649.1	chr6	38876409	38876609	-	1	NA	NA	NA	-319	NM_001294143	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.165000	0.776119	
mm_25526.1	chr3	114904002	114904202	+	1	NA	NA	NA	24	NM_153458	229759	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding	0.030000	0.497512	
mm_87486.1	chr10	51494487	51494687	+	1	NA	NA	NA	3689	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.005000	0.482587	
mm_67148.1	chr7	73502530	73502730	-	1	NA	NA	NA	39116	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.010000	0.432836	
mm_140531.1	chr17	6746790	6746990	-	1	NA	NA	NA	35890	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.020000	0.527363	
mm_165150.1	chr2	19423092	19423292	-	1	NA	NA	NA	-22471	NM_018809	19213	Mm.69647	NM_018809	ENSMUSG00000026735	Ptf1a	PTF1-p48|PTF1p48|bHLHa29	pancreas specific transcription factor, 1a	protein-coding	0.010000	0.562189	3(CCCTCTTTATGG,-,0.00),5(CTCTTTATGGAG,+,0.00)
mm_20508.1	chr2	130629881	130630081	-	1	NA	NA	NA	46	NM_198176	380601	Mm.27090	NM_198176	ENSMUSG00000079043	Fastkd5	C78212|mKIAA1792	FAST kinase domains 5	protein-coding	0.090000	0.641791	
mm_3130.1	chr1	134962537	134962737	+	1	NA	NA	NA	72	NM_001278115	67196	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	0.100000	0.676617	
mm_14287.1	chr2	128818020	128818220	+	1	NA	NA	NA	-183	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.045000	0.666667	
mm_133627.1	chr16	91611414	91611614	+	1	NA	NA	NA	7485	NM_001099738	246738	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0.035000	0.517413	
mm_37835.1	chr4	132048936	132049136	-	1	NA	NA	NA	42	NM_001128606	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.175000	0.805970	
mm_89859.1	chr10	108161996	108162196	+	1	NA	NA	NA	-304	NM_027892	17931	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.155000	0.791045	
mm_110188.1	chr12	27339310	27339510	-	1	NA	NA	NA	3308	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.105000	0.587065	
mm_123255.1	chr14	61046375	61046575	-	1	NA	NA	NA	380	NM_013869	29820	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.055000	0.631841	
mm_145341.1	chr18	56469159	56469359	+	1	NA	NA	NA	37127	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.025000	0.626866	
mm_115384.1	chr13	113139181	113139381	+	1	NA	NA	NA	3205	NR_131045	76720	Mm.54263	NR_131045		1700084D21Rik	-	RIKEN cDNA 1700084D21 gene	ncRNA	0.000000	0.537313	
mm_67470.1	chr7	80419323	80419523	-	1	NA	NA	NA	-13987	NM_001081454	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.015000	0.547264	
mm_20830.1	chr2	147013226	147013426	-	1	NA	NA	NA	266	NM_011917	24128	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	0.115000	0.761194	
mm_168753.1	chr12	115920666	115920866	-	1	NA	NA	NA	-126958	NM_001004066	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0.005000	0.437811	
mm_52602.1	chr6	117173414	117173614	+	1	NA	NA	NA	4979	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.025000	0.502488	
mm_41017.1	chr5	81140048	81140248	+	1	NA	NA	NA	118555	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.000000	0.333333	
mm_111131.1	chr12	81485008	81485208	-	1	NA	NA	NA	29	NM_001309809	66272	Mm.439970	NM_025461	ENSMUSG00000091803	Cox16	1810020G14Rik|1810055I05Rik|BB388670	cytochrome c oxidase assembly protein 16	protein-coding	0.080000	0.616915	
mm_109185.1	chr12	108485214	108485414	+	1	NA	NA	NA	62498	NM_001043335	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.010000	0.517413	
mm_136476.1	chr16	95869446	95869646	-	1	NA	NA	NA	29167	NR_040485	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.005000	0.512438	
mm_142621.1	chr17	47010483	47010683	-	1	NA	NA	NA	-51	NM_001177374	224826	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|ENSMUSG00000043296|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0.060000	0.606965	
mm_135807.1	chr16	57353048	57353248	-	1	NA	NA	NA	-129	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.015000	0.487562	
mm_47903.1	chr5	134915427	134915627	-	1	NA	NA	NA	3	NM_020504	57255	Mm.86652	NM_020504	ENSMUSG00000008843	Cldn13	2500004B14Rik	claudin 13	protein-coding	0.015000	0.557214	
mm_56303.1	chr6	91758729	91758929	-	1	NA	NA	NA	48564	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.020000	0.432836	
mm_136866.1	chr17	12878567	12878767	+	1	NA	NA	NA	2633	NM_030726	80978	Mm.160368	NM_030726	ENSMUSG00000059408	Mrgprh	Gpr90|Mgrb|MrgH	MAS-related GPR, member H	protein-coding	0.000000	0.432836	
mm_154997.1	chrX	38600773	38600973	+	1	NA	NA	NA	215	NM_026902	68995	Mm.262453	NM_026902	ENSMUSG00000000355	Mcts1	1500019M23Rik|MCT-1	malignant T cell amplified sequence 1	protein-coding	0.020000	0.517413	
mm_156766.1	chrX	160529955	160530155	+	1	NA	NA	NA	27621	NM_001177878	110094	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	0.000000	0.298507	-74(CTGCATATAAAG,-,0.00)
mm_73447.1	chr8	106243206	106243406	+	1	NA	NA	NA	32252	NM_145404	214572	Mm.251804	NM_145404	ENSMUSG00000060098	Prmt7	4933402B05Rik|BC006705	protein arginine N-methyltransferase 7	protein-coding	0.035000	0.636816	
mm_15129.1	chr2	153874971	153875171	+	1	NA	NA	NA	26	NM_025631	66557	Mm.46448	NM_025631	ENSMUSG00000027481	Bpifb2	2310034L21Rik|2310069A01Rik|AV089125|Bpil1|LPLUNC2|RYSR	BPI fold containing family B, member 2	protein-coding	0.025000	0.597015	-30(CCTCATAAAGCA,+,0.00)
mm_161658.1	chr17	7385318	7385518	-	1	NA	NA	NA	-113	NM_001142539	667055	Mm.327371	NM_001142539	ENSMUSG00000056133	Gm9992	ENSMUSG00000056133	predicted gene 9992	protein-coding	0.025000	0.562189	
mm_66182.1	chr7	34168405	34168605	-	1	NA	NA	NA	24	NM_016682	50995	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	0.110000	0.721393	
mm_64916.1	chr7	16239805	16240005	-	1	NA	NA	NA	2426	NM_001146005	319430	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	0.015000	0.552239	-13(CCATAAATAGTC,+,0.00)
mm_23679.1	chr3	68584240	68584440	+	1	NA	NA	NA	11972	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.020000	0.472637	
mm_53872.1	chr6	149408785	149408985	+	1	NA	NA	NA	-99	NM_001112796	12121	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	bicaudal D homolog 1 (Drosophila)	protein-coding	0.040000	0.611940	
mm_64754.1	chr7	4812453	4812653	-	1	NA	NA	NA	-213	NM_133777	77891	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	0.065000	0.552239	
mm_99207.1	chr11	101022883	101023083	+	1	NA	NA	NA	-7357	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.015000	0.492537	
mm_135521.1	chr16	48872379	48872579	-	1	NA	NA	NA	-129	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.015000	0.432836	
mm_56810.1	chr6	116668279	116668479	-	1	NA	NA	NA	5457	NM_178045	213391	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.020000	0.467662	
mm_162985.1	chr11	22859627	22859827	-	1	NA	NA	NA	8	NM_016888	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.160000	0.781095	
mm_110042.1	chr12	17324629	17324829	-	1	NA	NA	NA	1	NM_133699	68775	Mm.178798	NM_133699	ENSMUSG00000020566	Atp6v1c2	1110038G14Rik	ATPase, H+ transporting, lysosomal V1 subunit C2	protein-coding	0.105000	0.691542	
mm_60213.1	chr7	43463065	43463265	+	1	NA	NA	NA	-68	NM_001290316	75690	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.010000	0.572139	
mm_6934.1	chr1	85591573	85591773	-	1	NA	NA	NA	7137	NM_030194	109032	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|ENSMUSG00000075603|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.020000	0.582090	
mm_100738.1	chr11	4095292	4095492	-	1	NA	NA	NA	39	NM_026443	67900	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0.035000	0.547264	
mm_95680.1	chr11	54141701	54141901	+	1	NA	NA	NA	40877	NM_011031	18452	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.010000	0.477612	
mm_111915.1	chr12	108871514	108871714	-	1	NA	NA	NA	20485	NM_001012310	104910	Mm.202653	NM_001012310	ENSMUSG00000048856	Slc25a47	AI132487|AI876593|HDMCP	solute carrier family 25, member 47	protein-coding	0.000000	0.502488	
mm_127598.1	chr15	102399744	102399944	+	1	NA	NA	NA	-6472	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.050000	0.651741	
mm_38351.1	chr4	137769961	137770161	-	1	NA	NA	NA	-3586	NM_001287172	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.015000	0.606965	
mm_11399.1	chr2	31476764	31476964	+	1	NA	NA	NA	6556	NR_002687	432466	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.010000	0.537313	
mm_57269.1	chr6	123288789	123288989	-	1	NA	NA	NA	982	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.015000	0.472637	74(TCCTATAAAGAG,+,0.00),74(TCCTATAAAGAG,-,0.00)
mm_152801.1	chr19	21652699	21652899	-	1	NA	NA	NA	-8	NM_025423	66206	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0.050000	0.537313	
mm_170194.1	chr17	66413906	66414106	-	1	NA	NA	NA	35744	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.030000	0.537313	-28(GGCTTTAAAAAA,-,0.00),-27(GCTTTAAAAAAC,+,0.00)
mm_167507.1	chr9	13310783	13310983	+	1	NA	NA	NA	63927	NM_025534	66396	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.000000	0.407960	
mm_165917.1	chr4	58289034	58289234	+	1	NA	NA	NA	3172	NM_010944	18198	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	0.010000	0.487562	29(GTGTTTAAGAGC,-,0.00)
mm_65942.1	chr7	30413335	30413535	-	1	NA	NA	NA	-353	NM_011662	22177	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0.020000	0.467662	
mm_124036.1	chr14	77033240	77033440	-	1	NA	NA	NA	3277	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding	0.040000	0.452736	
mm_54262.1	chr6	28397960	28398160	-	1	NA	NA	NA	23664	NM_028900	74375	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	0.055000	0.542289	
mm_123926.1	chr14	73365635	73365835	-	1	NA	NA	NA	19536	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.025000	0.432836	
mm_3907.1	chr1	161896252	161896452	+	1	NA	NA	NA	-19691	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.025000	0.502488	
mm_109499.1	chr12	111451766	111451966	+	1	NA	NA	NA	9205	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.015000	0.507463	
mm_34327.1	chr4	142017885	142018085	+	1	NA	NA	NA	87	NR_131014	78917	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.045000	0.577114	
mm_44287.1	chr5	8368013	8368213	-	1	NA	NA	NA	47	NM_001007221	11496	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.100000	0.721393	
mm_155841.1	chrX	101242637	101242837	+	1	NA	NA	NA	-11791	NM_018789	54601	Mm.240299	NM_018789	ENSMUSG00000042903	Foxo4	Afxh|Mllt7|afx	forkhead box O4	protein-coding	0.015000	0.388060	
mm_52857.1	chr6	122136533	122136733	+	1	NA	NA	NA	5	NR_003624	381806	Mm.482418	NM_001013775	ENSMUSG00000071204	Gm10319	EG381806|ENSMUSG00000071204	murinoglobulin pseudogene	pseudo	0.000000	0.412935	
mm_12861.1	chr2	83771611	83771811	+	1	NA	NA	NA	-41017	NM_175514	241520	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	0.010000	0.373134	
mm_155856.1	chrX	101319951	101320151	+	1	NA	NA	NA	20872	NM_172932	245537	Mm.121508	NM_172932	ENSMUSG00000031302	Nlgn3	A230085M13Rik|HNL3|NL3	neuroligin 3	protein-coding	0.030000	0.597015	
mm_24559.1	chr3	93443536	93443736	+	1	NA	NA	NA	1306	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.070000	0.601990	
mm_81226.1	chr9	107652047	107652247	+	1	NA	NA	NA	15252	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.010000	0.557214	
mm_3775.1	chr1	156523991	156524191	+	1	NA	NA	NA	-34696	NM_009595	11352	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0.075000	0.597015	
mm_118691.1	chr14	22123684	22123884	+	1	NA	NA	NA	104072	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.015000	0.492537	
mm_14573.1	chr2	135473698	135473898	+	1	NA	NA	NA	67968	NR_039540	100628568		NR_039540	ENSMUSG00000092830	Mir3963	mmu-mir-3963|mu-mir-3963	microRNA 3963	ncRNA	0.000000	0.303483	45(TACTTTAAAGGG,-,0.00)
mm_135823.1	chr16	58499292	58499492	-	1	NA	NA	NA	23920	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.000000	0.417910	
mm_113646.1	chr13	42301414	42301614	+	1	NA	NA	NA	38	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.045000	0.517413	56(CACTCTATAGGG,-,0.00),71(CAATATAAAAAG,-,0.00)
mm_133686.1	chr16	92498115	92498315	+	1	NA	NA	NA	68	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	0.020000	0.522388	
mm_149355.1	chr19	10937655	10937855	+	1	NA	NA	NA	595	NM_009962	14764	Mm.470721	NM_009962	ENSMUSG00000034117	Ptgdr2	Crth2|Gpr44|Grp45	prostaglandin D2 receptor 2	protein-coding	0.005000	0.502488	
mm_78271.1	chr9	22002944	22003144	+	1	NA	NA	NA	56	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.065000	0.547264	
mm_95248.1	chr11	44618095	44618295	+	1	NA	NA	NA	95	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.055000	0.482587	
mm_111909.1	chr12	108792577	108792777	-	1	NA	NA	NA	-634	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.185000	0.756219	
mm_64687.1	chr7	4514521	4514721	-	1	NA	NA	NA	1354	NM_001277903	21955	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0.005000	0.487562	
mm_156320.1	chrX	137358600	137358800	+	1	NA	NA	NA	-212054	NM_030688	60367	Mm.328321	NM_030688	ENSMUSG00000059203	Il1rapl2	-	interleukin 1 receptor accessory protein-like 2	protein-coding	0.005000	0.442786	
mm_149624.1	chr19	16956068	16956268	+	1	NA	NA	NA	50	NM_181348	353211	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.075000	0.666667	
mm_131870.1	chr16	23175183	23175383	+	1	NA	NA	NA	28747	NM_009605	11450	Mm.3969	NM_009605	ENSMUSG00000022878	Adipoq	30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1	adiponectin, C1Q and collagen domain containing	protein-coding	0.010000	0.427861	
mm_31297.1	chr4	45972677	45972877	+	1	NA	NA	NA	480	NM_146142	100121	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.110000	0.691542	
mm_8836.1	chr1	162672051	162672251	-	1	NA	NA	NA	-13932	NM_001177581	100038657	Mm.416999	NM_001177581	ENSMUSG00000091060	7420461P10Rik	ENSMUSG00000073516	RIKEN cDNA 7420461P10 gene	protein-coding	0.000000	0.333333	
mm_104089.1	chr11	86630963	86631163	-	1	NA	NA	NA	-25008	NR_106195	102465902		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	0.040000	0.552239	
mm_87841.1	chr10	60399763	60399963	+	1	NA	NA	NA	137	NM_001164374	100302688	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.010000	0.557214	
mm_164322.1	chr16	4963915	4964115	-	1	NA	NA	NA	222	NM_028301	72615	Mm.290628	NM_028301	ENSMUSG00000022515	Anks3	2700067D09Rik|C81345|mKIAA1977	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding	0.095000	0.716418	
mm_53381.1	chr6	129512639	129512839	+	1	NA	NA	NA	182	NM_001081186	330428	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	0.005000	0.388060	
mm_133353.1	chr16	84605465	84605665	+	1	NA	NA	NA	-74224	NR_040537	78023	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0.005000	0.417910	
mm_3883.1	chr1	161035960	161036160	+	1	NA	NA	NA	894	NR_002840	14455	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	0.010000	0.417910	
mm_915.1	chr1	55033993	55034193	+	1	NA	NA	NA	-6615	NM_031179	81898	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	0.005000	0.497512	
mm_43385.1	chr5	135730202	135730402	+	1	NA	NA	NA	5587	NR_106001	102466791		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.045000	0.597015	
mm_45088.1	chr5	44099129	44099329	-	1	NA	NA	NA	2507	NM_008935	19126	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.020000	0.547264	
mm_87397.1	chr10	45335816	45336016	+	1	NA	NA	NA	154	NM_024285	23828	Mm.332793	NM_024285	ENSMUSG00000071317	Bves	Pop1|Popdc1|mBVES	blood vessel epicardial substance	protein-coding	0.195000	0.771144	
mm_66395.1	chr7	44241176	44241376	-	1	NA	NA	NA	-5154	NR_029436	70004	Mm.158317	NR_029436	ENSMUSG00000038782	1700028J19Rik	-	RIKEN cDNA 1700028J19 gene	ncRNA	0.005000	0.517413	
mm_137070.1	chr17	20945358	20945558	+	1	NA	NA	NA	4	NM_016891	51792	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	0.115000	0.671642	
mm_48154.1	chr5	137152039	137152239	-	1	NA	NA	NA	-35932	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.010000	0.497512	
mm_70610.1	chr8	13414173	13414373	+	1	NA	NA	NA	9192	NM_011881	24013	Mm.257501	NM_011881	ENSMUSG00000031450	Grk1	Gprk1|Rhok|Rk	G protein-coupled receptor kinase 1	protein-coding	0.030000	0.592040	
mm_23352.1	chr3	55055153	55055353	+	1	NA	NA	NA	11	NR_040593	70970	Mm.251485	NR_040593	ENSMUSG00000106589	4931419H13Rik	-	RIKEN cDNA 4931419H13 gene	ncRNA	0.120000	0.751244	
mm_51737.1	chr6	87104648	87104848	+	1	NA	NA	NA	2	NM_001167937	52372	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0.010000	0.532338	
mm_52322.1	chr6	108836522	108836722	+	1	NA	NA	NA	7981	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.015000	0.477612	44(CCTTTTATGGTC,+,0.00)
mm_129076.1	chr15	75810422	75810622	-	1	NA	NA	NA	31386	NM_172121	223642	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0.015000	0.547264	
mm_82924.1	chr9	35116748	35116948	-	1	NA	NA	NA	-38	NM_009178	20443	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0.125000	0.786070	
mm_18003.1	chr2	38224398	38224598	-	1	NA	NA	NA	62886	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.005000	0.348259	
mm_167765.1	chr9	110532611	110532811	+	1	NA	NA	NA	114	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.125000	0.721393	
mm_28675.1	chr3	95307094	95307294	-	1	NA	NA	NA	-18	NM_023628	71790	Mm.218844	NM_023628	ENSMUSG00000015702	Anxa9	1110003P15Rik|2310069F17Rik	annexin A9	protein-coding	0.025000	0.572139	
mm_34207.1	chr4	140946179	140946379	+	1	NA	NA	NA	11623	NR_045911	100126227	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	OTTMUSG00000010081	predicted gene 13031	ncRNA	0.010000	0.507463	-57(GCATTTAAAAGA,-,0.00)
mm_108588.1	chr12	85289546	85289746	+	1	NA	NA	NA	1055	NM_172414	72350	Mm.158810	NM_172414	ENSMUSG00000045064	Zc2hc1c	2810002I04Rik|AV046379|Fam164c	zinc finger, C2HC-type containing 1C	protein-coding	0.035000	0.527363	
mm_30176.1	chr3	144204869	144205069	-	1	NA	NA	NA	286	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.070000	0.621891	
mm_153033.1	chr19	31765161	31765361	-	1	NA	NA	NA	-228	NM_001013833	19091	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0.020000	0.497512	
mm_32831.1	chr4	117609651	117609851	+	1	NA	NA	NA	59386	NM_080469	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.015000	0.537313	
mm_20245.1	chr2	126499597	126499797	-	1	NA	NA	NA	-8144	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	0.025000	0.497512	
mm_78598.1	chr9	37488676	37488876	+	1	NA	NA	NA	-545	NM_146222	235184	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	0.020000	0.482587	
mm_51391.1	chr6	78370561	78370761	+	1	NA	NA	NA	-224	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.010000	0.417910	
mm_166340.1	chr5	114884134	114884334	-	1	NA	NA	NA	-12700	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.015000	0.393035	57(ATCTTTAAAAGT,-,0.00),58(TCTTTAAAAGTA,+,0.00)
mm_24508.1	chr3	92584032	92584232	+	1	NA	NA	NA	4892	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.000000	0.457711	
mm_86155.1	chr9	118040283	118040483	-	1	NA	NA	NA	-139	NM_001286508	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.110000	0.706468	
mm_93131.1	chr10	92089109	92089309	-	1	NA	NA	NA	-17024	NR_029812	723955		NR_029812	ENSMUSG00000065524	Mir135a-2	Mirn135a-2|mir-135a-2	microRNA 135a-2	ncRNA	0.000000	0.343284	16(TCTTATCTAGCC,+,0.00)
mm_43515.1	chr5	137149690	137149890	+	1	NA	NA	NA	-33583	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.487562	
mm_160820.1	chr11	29764092	29764292	-	1	NA	NA	NA	45629	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.025000	0.557214	
mm_21509.1	chr2	163624895	163625095	-	1	NA	NA	NA	17783	NM_001305803	76080	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.000000	0.363184	-77(GGATATTTAAGG,-,0.00),-42(CTCCTTAAAAAC,-,0.00),-40(CCTTAAAAACCA,+,0.00)
mm_92704.1	chr10	80723289	80723489	-	1	NA	NA	NA	18822	NM_007460	11776	Mm.27082	NM_007460	ENSMUSG00000020198	Ap3d1	AA407035|Ap3d|Bolvr|mBLVR1|mh|mocha	adaptor-related protein complex 3, delta 1 subunit	protein-coding	0.005000	0.398010	
mm_113746.1	chr13	44730671	44730871	+	1	NA	NA	NA	-3	NM_021878	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.055000	0.597015	
mm_169755.1	chr15	90882417	90882617	+	1	NA	NA	NA	15959	NR_033583	20738	Mm.431547	NR_033583		Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.075000	0.557214	
mm_162001.1	chr19	40073727	40073927	-	1	NA	NA	NA	-14	NM_206537	404195	Mm.379575	NM_206537	ENSMUSG00000067225	Cyp2c54	EG404195	cytochrome P450, family 2, subfamily c, polypeptide 54	protein-coding	0.000000	0.422886	
mm_18744.1	chr2	73214267	73214467	-	1	NA	NA	NA	80	NM_030091	67059	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	0.140000	0.746269	
mm_76870.1	chr8	105525287	105525487	-	1	NA	NA	NA	6641	NM_008289	15484	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	0.050000	0.572139	
mm_69375.1	chr7	131146195	131146395	-	1	NA	NA	NA	-12	NM_173409	233918	Mm.78341	NM_173409	ENSMUSG00000013668	4933402N03Rik	4930412O05	RIKEN cDNA 4933402N03 gene	protein-coding	0.010000	0.452736	64(CAGTATAAAAGC,-,0.00)
mm_100942.1	chr11	6528352	6528552	-	1	NA	NA	NA	308	NR_045893	100041286	Mm.459507	NR_045893	ENSMUSG00000085156	Snhg15	Gm11974|OTTMUSG00000005115	small nucleolar RNA host gene 15	ncRNA	0.040000	0.537313	
mm_157752.1	chrX	73492004	73492204	-	1	NA	NA	NA	8503	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.035000	0.527363	
mm_14182.1	chr2	127070578	127070778	+	1	NA	NA	NA	21	NM_026678	109778	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0.090000	0.651741	
mm_24554.1	chr3	93443392	93443592	+	1	NA	NA	NA	1162	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.050000	0.512438	
mm_121213.1	chr14	103054476	103054676	+	1	NA	NA	NA	7564	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.030000	0.557214	
mm_117786.1	chr13	97034275	97034475	-	1	NA	NA	NA	-13	NM_001080777	66479	Mm.390629	NM_025585	ENSMUSG00000052075	1700029F12Rik	-	RIKEN cDNA 1700029F12 gene	protein-coding	0.005000	0.432836	32(TGATTTAAAAGG,-,0.00)
mm_129843.1	chr15	83158776	83158976	-	1	NA	NA	NA	9231	NR_004432	104307	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.025000	0.577114	
mm_64476.1	chr7	143053379	143053579	+	1	NA	NA	NA	207	NR_110355	97423	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	0.065000	0.631841	
mm_76048.1	chr8	77610650	77610850	-	1	NA	NA	NA	-97	NM_145599	234463	Mm.273578	NM_145599	ENSMUSG00000031617	Tmem184c	8430433H16Rik|AI645453|AL033298|BC004056|Tmem34	transmembrane protein 184C	protein-coding	0.045000	0.487562	
mm_159945.1	chr6	84087931	84088131	+	1	NA	NA	NA	68645	NM_021469	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.000000	0.482587	
mm_16143.1	chr2	171253184	171253384	+	1	NA	NA	NA	521477	NM_001163686	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0.030000	0.562189	
mm_167118.1	chr7	119479284	119479484	-	1	NA	NA	NA	-122	NM_001278605	22242	Mm.10826	NM_009470	ENSMUSG00000030963	Umod	THP|Urehd1|urehr4	uromodulin	protein-coding	0.000000	0.432836	
mm_112880.1	chr13	20855733	20855933	+	1	NA	NA	NA	61720	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.407960	
mm_42393.1	chr5	114937210	114937410	+	1	NA	NA	NA	-4892	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.035000	0.557214	
mm_117425.1	chr13	74363902	74364102	-	1	NA	NA	NA	-2	NM_001033042	432779	Mm.324679	NM_001033042	ENSMUSG00000021579	Lrrc14b	AI595366	leucine rich repeat containing 14B	protein-coding	0.035000	0.532338	-31(AGCTATAAATAG,-,0.00),-29(CTATAAATAGCC,+,0.00)
mm_117943.1	chr13	99434797	99434997	-	1	NA	NA	NA	-22071	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.462687	
mm_138690.1	chr17	35979459	35979659	+	1	NA	NA	NA	-92	NM_001165892	75210	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	0.065000	0.606965	
mm_7318.1	chr1	99790996	99791196	-	1	NA	NA	NA	18331	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0.035000	0.527363	
mm_154878.1	chrX	20694037	20694237	+	1	NA	NA	NA	5711	NM_011049	18555	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	0.020000	0.547264	
mm_81776.1	chr9	114688698	114688898	+	1	NA	NA	NA	-33	NM_146229	235661	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	0.120000	0.726368	
mm_42553.1	chr5	116802595	116802795	+	1	NA	NA	NA	-210878	NM_026886	68955	Mm.146779	NM_026886	ENSMUSG00000063919	Srrm4	1500001A10Rik|B230202K19Rik|bv|mKIAA1853|nSR100	serine/arginine repetitive matrix 4	protein-coding	0.010000	0.462687	
mm_122865.1	chr14	54912351	54912551	-	1	NA	NA	NA	681	NM_021551	59049	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	0.105000	0.726368	
mm_60214.1	chr7	43463101	43463301	+	1	NA	NA	NA	-32	NM_001290316	75690	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.005000	0.567164	
mm_6011.1	chr1	59003438	59003638	-	1	NA	NA	NA	29967	NM_172656	227154	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	0.010000	0.368159	
mm_111829.1	chr12	107131822	107132022	-	1	NA	NA	NA	-415598	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.010000	0.383085	
mm_169809.1	chr16	18533222	18533422	-	1	NA	NA	NA	34451	NR_104347	13972	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|OTTMUSG00000033458|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	0.020000	0.318408	
mm_172258.1	chr6	72375680	72375880	-	1	NA	NA	NA	4688	NM_016872	53620	Mm.440321	NM_016872	ENSMUSG00000073002	Vamp5	AF119384|Camp	vesicle-associated membrane protein 5	protein-coding	0.030000	0.527363	
mm_55827.1	chr6	83121328	83121528	-	1	NA	NA	NA	33	NM_001083923	22377	Mm.1109	NM_016757	ENSMUSG00000030035	Wbp1	AI255152	WW domain binding protein 1	protein-coding	0.060000	0.626866	
mm_111527.1	chr12	100206394	100206594	-	1	NA	NA	NA	6350	NM_001313934	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.010000	0.348259	
mm_118206.1	chr13	109837560	109837760	-	1	NA	NA	NA	-66149	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.035000	0.477612	
mm_49634.1	chr6	30804875	30805075	+	1	NA	NA	NA	63676	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.592040	
mm_167550.1	chr9	32620848	32621048	+	1	NA	NA	NA	-75094	NM_011808	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.010000	0.472637	
mm_70780.1	chr8	22405145	22405345	+	1	NA	NA	NA	-6095	NM_020560	57312	Mm.289402	NM_020560	ENSMUSG00000031533	Mrps31	1500002D03Rik|AA960481|Imogen38|Imogen44	mitochondrial ribosomal protein S31	protein-coding	0.015000	0.492537	
mm_128942.1	chr15	74734225	74734425	-	1	NA	NA	NA	-12	NM_026671	68311	Mm.306880	NM_026671	ENSMUSG00000022595	Lypd2	0610005K03Rik|Lypdc2|VLL	Ly6/Plaur domain containing 2	protein-coding	0.020000	0.601990	
mm_25841.1	chr3	129215423	129215623	+	1	NA	NA	NA	1591	NM_001287048	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.060000	0.621891	
mm_59437.1	chr7	27131191	27131391	+	1	NA	NA	NA	11336	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.065000	0.577114	
mm_62188.1	chr7	97536121	97536321	+	1	NA	NA	NA	43276	NM_001177945	66273	Mm.41583	NM_183251	ENSMUSG00000035642	Aamdc	1810020D17Rik|1810037D19Rik|LI2	adipogenesis associated Mth938 domain containing	protein-coding	0.005000	0.512438	
mm_31942.1	chr4	86657188	86657388	+	1	NA	NA	NA	12771	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.040000	0.562189	
mm_135870.1	chr16	61389835	61390035	-	1	NA	NA	NA	-784404	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0.010000	0.487562	
mm_10136.1	chr2	4058019	4058219	+	1	NA	NA	NA	40436	NM_001347086	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.000000	0.383085	
mm_30962.1	chr4	33924902	33925102	+	1	NA	NA	NA	370	NM_007726	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding	0.060000	0.676617	
mm_49772.1	chr6	34873260	34873460	+	1	NA	NA	NA	4705	NM_199145	78412	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.010000	0.522388	
mm_147811.1	chr18	61719254	61719454	-	1	NA	NA	NA	6977	NM_021296	17714	Mm.269657	NM_021296	ENSMUSG00000024580	Grpel2	mt-GrpE#2|mt-Grpel2	GrpE-like 2, mitochondrial	protein-coding	0.015000	0.502488	
mm_139541.1	chr17	56710848	56711048	+	1	NA	NA	NA	5973	NM_178926	106639	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0.040000	0.651741	
mm_106979.1	chr12	9574388	9574588	+	1	NA	NA	NA	46	NM_011859	23967	Mm.45055	NM_011859	ENSMUSG00000048387	Osr1	Odd1|Osr	odd-skipped related 1 (Drosophila)	protein-coding	0.065000	0.611940	
mm_6175.1	chr1	65100362	65100562	-	1	NA	NA	NA	2901	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.035000	0.507463	30(GCCCATATATGC,-,0.00)
mm_100092.1	chr11	115603845	115604045	+	1	NA	NA	NA	-29	NM_173048	260302	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	0.140000	0.751244	
mm_7442.1	chr1	120116332	120116532	-	1	NA	NA	NA	4487	NM_001037999	13167	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	0.020000	0.532338	
mm_28227.1	chr3	88453376	88453576	-	1	NA	NA	NA	2285	NM_013658	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.025000	0.562189	
mm_34244.1	chr4	141239501	141239701	+	1	NA	NA	NA	-3283	NM_172520	213649	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	0.050000	0.641791	
mm_5417.1	chr1	33907605	33907805	-	1	NA	NA	NA	62	NM_001310484	320705	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.150000	0.791045	
mm_35221.1	chr4	19659522	19659722	-	1	NA	NA	NA	49382	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.015000	0.457711	
mm_951.1	chr1	57576597	57576797	+	1	NA	NA	NA	-170023	NM_001302963	68736	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0.000000	0.482587	46(CCTCTTATACCA,+,0.00)
mm_124571.1	chr14	124309684	124309884	-	1	NA	NA	NA	-117238	NM_010201	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.005000	0.263682	
mm_138167.1	chr17	34264304	34264504	+	1	NA	NA	NA	1177	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.025000	0.378109	
mm_43347.1	chr5	135149598	135149798	+	1	NA	NA	NA	-13	NM_013763	27368	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0.090000	0.711443	
mm_32555.1	chr4	109415563	109415763	+	1	NA	NA	NA	16	NM_001145948	230603	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.000000	0.477612	
mm_99855.1	chr11	109363684	109363884	+	1	NA	NA	NA	-130	NR_038097	100036768	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	OTTMUSG00000003456	predicted gene 11696	ncRNA	0.010000	0.417910	
mm_1855.1	chr1	84710269	84710469	+	1	NA	NA	NA	-14148	NM_152915	227325	Mm.292560	NM_152915	ENSMUSG00000036766	Dner	A930026D19Rik|BET|Bret	delta/notch-like EGF repeat containing	protein-coding	0.055000	0.482587	
mm_105135.1	chr11	101459162	101459362	-	1	NA	NA	NA	6937	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.010000	0.562189	
mm_47474.1	chr5	123720868	123721068	-	1	NA	NA	NA	76	NM_027494	70650	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0.050000	0.621891	
mm_105661.1	chr11	107348066	107348266	-	1	NA	NA	NA	122554	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.020000	0.497512	
mm_165301.1	chr2	92567927	92568127	+	1	NA	NA	NA	-24179	NR_106080	102466819		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	0.015000	0.328358	
mm_93753.1	chr10	120171254	120171454	-	1	NA	NA	NA	30183	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.025000	0.462687	
mm_3641.1	chr1	152817343	152817543	+	1	NA	NA	NA	17290	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.005000	0.398010	-63(CCTTATAGAGTC,+,0.00)
mm_99938.1	chr11	111026926	111027126	+	1	NA	NA	NA	3166	NM_001252208	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.000000	0.432836	
mm_110204.1	chr12	27341510	27341710	-	1	NA	NA	NA	1108	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.130000	0.721393	
mm_83890.1	chr9	55938018	55938218	-	1	NA	NA	NA	-3	NM_001081341	244891	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	0.140000	0.771144	
mm_142323.1	chr17	43477649	43477849	-	1	NA	NA	NA	25024	NM_008585	17287	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	0.000000	0.363184	
mm_129803.1	chr15	82963657	82963857	-	1	NA	NA	NA	-4461	NR_037241	100526477		NR_037241	ENSMUSG00000092751	Mir3080	mmu-mir-3080	microRNA 3080	ncRNA	0.150000	0.796020	
mm_23829.1	chr3	81037285	81037485	+	1	NA	NA	NA	969	NM_019971	54635	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C	platelet-derived growth factor, C polypeptide	protein-coding	0.070000	0.661692	
mm_162138.1	chrX	73892133	73892333	+	1	NA	NA	NA	131	NM_019404	12000	Mm.383171	NM_019404	ENSMUSG00000031390	Avpr2	ADHR|DI1|DIR|ND1|V2R|VPV2R	arginine vasopressin receptor 2	protein-coding	0.015000	0.572139	
mm_97906.1	chr11	83437614	83437814	+	1	NA	NA	NA	20	NM_025492	66330	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	0.000000	0.517413	52(GGCTAGAAAGGG,-,0.00)
mm_115494.1	chr13	3803188	3803388	-	1	NA	NA	NA	1030	NM_027416	70405	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0.030000	0.527363	
mm_14300.1	chr2	129065864	129066064	+	1	NA	NA	NA	17	NM_027192	69737	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	0.155000	0.776119	
mm_3451.1	chr1	150102985	150103185	+	1	NA	NA	NA	3054	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.422886	
mm_130846.1	chr15	101924634	101924834	-	1	NA	NA	NA	1	NM_008475	16682	Mm.46425	NM_008475	ENSMUSG00000059668	Krt4	AW108092|K4|Krt-2.4|Krt2-4	keratin 4	protein-coding	0.040000	0.577114	-71(CCCTTTATGCCC,+,0.00),-35(GCGCATATAAGC,-,0.00)
mm_148396.1	chr19	3767862	3768062	+	1	NA	NA	NA	541	NM_001167885	225888	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0.095000	0.611940	
mm_41146.1	chr5	87926940	87927140	+	1	NA	NA	NA	1407	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.015000	0.417910	
mm_3960.1	chr1	164115260	164115460	+	1	NA	NA	NA	96	NM_011347	20344	Mm.3337	NM_011347	ENSMUSG00000026580	Selp	CD62P|GMP-140|Grmp|LECAM3|PADGEM	selectin, platelet	protein-coding	0.015000	0.442786	44(CTCTTTATGGGA,+,0.00)
mm_8908.1	chr1	163312620	163312820	-	1	NA	NA	NA	930	NM_011127	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.030000	0.592040	
mm_135960.1	chr16	74754547	74754747	-	1	NA	NA	NA	-343735	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.005000	0.233831	
mm_146059.1	chr18	69682982	69683182	+	1	NA	NA	NA	-242477	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.005000	0.338308	-100(GTTCTTAAAAGG,-,0.00),-98(TCTTAAAAGGGG,+,0.00),-78(CACTTTAAAAAA,-,0.00)
mm_82817.1	chr9	31018636	31018836	-	1	NA	NA	NA	-11908	NM_001115130	235132	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.005000	0.462687	-34(TGTTATAAAAGC,-,0.00),3(CCTTTAATACCT,+,0.00)
mm_60972.1	chr7	48877865	48878065	+	1	NA	NA	NA	3076	NM_001013368	108961	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.040000	0.517413	
mm_50331.1	chr6	48412063	48412263	+	1	NA	NA	NA	16577	NM_001347153	77827	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	0.005000	0.492537	
mm_79512.1	chr9	57520445	57520645	+	1	NA	NA	NA	-687	NM_007747	12858	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.015000	0.432836	
mm_108819.1	chr12	95695336	95695536	+	1	NA	NA	NA	3210	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.130000	0.731343	
mm_45782.1	chr5	87336458	87336658	-	1	NA	NA	NA	637	NM_028094	72094	Mm.482739	NM_028094	ENSMUSG00000035780	Ugt2a3	2010321J07Rik	UDP glucuronosyltransferase 2 family, polypeptide A3	protein-coding	0.010000	0.437811	
mm_65053.1	chr7	18656624	18656824	-	1	NA	NA	NA	1	NM_027403	72242	Mm.326858	NM_027403	ENSMUSG00000070796	Psg21	1600019C01Rik|1600025N01Rik|1600026N13Rik|cea8	pregnancy-specific glycoprotein 21	protein-coding	0.005000	0.447761	
mm_82236.1	chr9	3038089	3038289	-	1	NA	NA	NA	554	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.358209	
mm_158589.1	chrX	150954683	150954883	-	1	NA	NA	NA	62510	NM_001168600	237107	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	0.005000	0.507463	
mm_3288.1	chr1	136676328	136676528	+	1	NA	NA	NA	-6968	NR_045324	100503460	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.040000	0.597015	30(GCCCTGTAAAGG,-,0.00)
mm_52678.1	chr6	117917215	117917415	+	1	NA	NA	NA	21	NM_001166427	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.140000	0.771144	
mm_121291.1	chr14	105258728	105258928	+	1	NA	NA	NA	155	NM_001190989	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.180000	0.776119	
mm_135357.1	chr16	43889555	43889755	-	1	NA	NA	NA	21	NM_029128	106248	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrtd1	3110012M05Rik|4930470H18Rik|AI648807|Qtrt2	queuine tRNA-ribosyltransferase domain containing 1	protein-coding	0.065000	0.542289	
mm_63901.1	chr7	139096225	139096425	+	1	NA	NA	NA	10324	NM_011993	26757	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	0.005000	0.587065	
mm_110627.1	chr12	57197198	57197398	-	1	NA	NA	NA	174	NM_172577	217593	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0.040000	0.517413	
mm_25127.1	chr3	102086398	102086598	+	1	NA	NA	NA	43	NM_009814	12373	Mm.15343	NM_009814	ENSMUSG00000027861	Casq2	AA033488|AW146219|Csq2|ESTM52|cCSQ	calsequestrin 2	protein-coding	0.015000	0.542289	
mm_121374.1	chr14	118212245	118212445	+	1	NA	NA	NA	-23887	NR_131969	105245869	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	0.045000	0.542289	
mm_48374.1	chr5	139484347	139484547	-	1	NA	NA	NA	44	NM_133349	100494	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.085000	0.621891	
mm_99277.1	chr11	101268682	101268882	+	1	NA	NA	NA	8215	NM_175638	69847	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	0.020000	0.611940	
mm_85439.1	chr9	104102338	104102538	-	1	NA	NA	NA	24205	NM_145700	252837	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	0.020000	0.487562	
mm_128478.1	chr15	50889604	50889804	-	1	NA	NA	NA	337	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.045000	0.572139	
mm_37035.1	chr4	115486992	115487192	-	1	NA	NA	NA	9049	NM_007822	13119	Mm.250901	NM_007822	ENSMUSG00000028715	Cyp4a14	AI314743	cytochrome P450, family 4, subfamily a, polypeptide 14	protein-coding	0.000000	0.457711	
mm_32254.1	chr4	102570462	102570662	+	1	NA	NA	NA	502	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.040000	0.592040	
mm_10105.1	chr2	3513010	3513210	+	1	NA	NA	NA	45	NM_177647	227526	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	0.050000	0.592040	
mm_145053.1	chr18	40265711	40265911	+	1	NA	NA	NA	7450	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.015000	0.407960	
mm_147892.1	chr18	65152827	65153027	-	1	NA	NA	NA	-95934	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.025000	0.497512	
mm_107280.1	chr12	29566655	29566855	+	1	NA	NA	NA	31850	NM_001093776	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.010000	0.442786	
mm_121055.1	chr14	87415915	87416115	+	1	NA	NA	NA	-568	NM_172605	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0.120000	0.686567	
mm_111098.1	chr12	80760439	80760639	-	1	NA	NA	NA	176	NM_001008423	380768	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	0.070000	0.626866	
mm_66561.1	chr7	45239021	45239221	-	1	NA	NA	NA	-6	NM_001290804	12493	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0.030000	0.592040	
mm_71273.1	chr8	40919466	40919666	+	1	NA	NA	NA	-6667	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.015000	0.447761	
mm_15496.1	chr2	157797251	157797451	+	1	NA	NA	NA	59950	NM_025680	66642	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	0.000000	0.348259	-91(CCTTTAAGAGTA,+,0.00)
mm_38873.1	chr4	149675995	149676195	-	1	NA	NA	NA	-6	NM_001164051	18707	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol 3-kinase catalytic delta polypeptide	protein-coding	0.130000	0.786070	
mm_147421.1	chr18	46198751	46198951	-	1	NA	NA	NA	-33	NM_001170855	28105	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.130000	0.776119	
mm_97976.1	chr11	83862780	83862980	+	1	NA	NA	NA	9920	NM_001291269	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.010000	0.398010	
mm_20886.1	chr2	148851068	148851268	-	1	NA	NA	NA	-234	NM_029960	77705	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	0.010000	0.487562	
mm_56347.1	chr6	92943396	92943596	-	1	NA	NA	NA	2914	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.110000	0.716418	
mm_81406.1	chr9	109051274	109051474	+	1	NA	NA	NA	-3492	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.045000	0.537313	
mm_105648.1	chr11	107132087	107132287	-	1	NA	NA	NA	-265	NM_176850	207165	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0.155000	0.781095	
mm_133716.1	chr16	93627934	93628134	+	1	NA	NA	NA	20197	NM_007620	12408	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	0.030000	0.567164	-38(GCCTAGAAAAGC,-,0.00)
mm_152387.1	chr19	10461336	10461536	-	1	NA	NA	NA	-3989	NM_001111140	278795	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0.010000	0.542289	
mm_1427.1	chr1	67174571	67174771	+	1	NA	NA	NA	51644	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.010000	0.323383	
mm_57394.1	chr6	124857596	124857796	-	1	NA	NA	NA	-9	NM_013534	14789	Mm.9002	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0.060000	0.686567	
mm_164992.1	chr19	12501972	12502172	-	1	NA	NA	NA	-76	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.035000	0.547264	
mm_39665.1	chr5	25222807	25223007	+	1	NA	NA	NA	14	NM_144908	231050	Mm.21814	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.185000	0.786070	
mm_121363.1	chr14	117324624	117324824	+	1	NA	NA	NA	399427	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.005000	0.333333	
mm_50657.1	chr6	51470454	51470654	+	1	NA	NA	NA	-62	NM_007624	12417	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	0.145000	0.815920	
mm_108379.1	chr12	80864836	80865036	+	1	NA	NA	NA	59511	NR_033786	67340	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.000000	0.417910	-98(AACCTTAAAGGG,-,0.00),-96(CCTTAAAGGGTC,+,0.00)
mm_40057.1	chr5	33996490	33996690	+	1	NA	NA	NA	606	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.115000	0.691542	
mm_171448.1	chr4	145410146	145410346	+	1	NA	NA	NA	-53964	NR_002888	545700	Mm.389595	NR_002888	ENSMUSG00000052912	Smarca5-ps	9230115A19Rik|OTTMUSG00000011029	SWI/SNF related, matrix associated, actin depenent ragulator of chromatin, subfamily a, member 5, pseudogene	pseudo	0.025000	0.467662	
mm_107589.1	chr12	47833843	47834043	+	1	NA	NA	NA	467519	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0.010000	0.427861	
mm_147127.1	chr18	35938107	35938307	-	1	NA	NA	NA	-26623	NM_028707	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.050000	0.497512	
mm_39709.1	chr5	27598784	27598984	+	1	NA	NA	NA	-97492	NM_028561	73526	Mm.389608	NM_028561	ENSMUSG00000048703	Speer4b	1700081O22Rik|SPEER-4B	spermatogenesis associated glutamate (E)-rich protein 4B	protein-coding	0.015000	0.487562	
mm_42637.1	chr5	118560194	118560394	+	1	NA	NA	NA	-425	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.155000	0.805970	
mm_20129.1	chr2	121313643	121313843	-	1	NA	NA	NA	18289	NM_001173506	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.000000	0.273632	-97(TTCTTTAAAAGA,-,0.00),-96(TCTTTAAAAGAG,+,0.00)
mm_58997.1	chr7	19176360	19176560	+	1	NA	NA	NA	39	NM_001347582	72205	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0.035000	0.597015	
mm_88152.1	chr10	69534114	69534314	+	1	NA	NA	NA	506	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.025000	0.492537	
mm_131919.1	chr16	23317477	23317677	+	1	NA	NA	NA	27107	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.005000	0.457711	
mm_58127.1	chr6	140398029	140398229	-	1	NA	NA	NA	-25970	NM_144920	109135	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.025000	0.532338	
mm_1073.1	chr1	59448754	59448954	+	1	NA	NA	NA	-33293	NM_008057	14369	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.000000	0.462687	
mm_70376.1	chr8	10006579	10006779	+	1	NA	NA	NA	46	NM_033622	24099	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	0.010000	0.502488	
mm_135499.1	chr16	46496198	46496398	-	1	NA	NA	NA	669	NM_021496	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.090000	0.646766	
mm_139899.1	chr17	70852906	70853106	+	1	NA	NA	NA	526	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.080000	0.696517	
mm_143877.1	chr17	84187763	84187963	-	1	NA	NA	NA	84	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.130000	0.711443	
mm_37818.1	chr4	131838164	131838364	-	1	NA	NA	NA	14	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	0.140000	0.761194	
mm_171772.1	chr5	108880567	108880767	+	1	NA	NA	NA	-28157	NM_001104621	435864	Mm.387745	NM_001104621	ENSMUSG00000091624	Vmn2r9	EG435864	vomeronasal 2, receptor 9	protein-coding	0.045000	0.537313	
mm_35318.1	chr4	25799726	25799926	-	1	NA	NA	NA	177	NM_010243	14348	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.060000	0.691542	
mm_34872.1	chr4	155559690	155559890	+	1	NA	NA	NA	-2602	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.010000	0.417910	
mm_95251.1	chr11	44621066	44621266	+	1	NA	NA	NA	3066	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.030000	0.562189	
mm_148506.1	chr19	4214257	4214457	+	1	NA	NA	NA	-32	NM_001310039	56708	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	0.070000	0.542289	34(GATTATTAAAGC,-,0.00)
mm_168909.1	chr12	55230304	55230504	+	1	NA	NA	NA	-74	NM_001100110	100101806	Mm.471968	NM_001100110	ENSMUSG00000079108	Srp54c	E330029E12Rik	signal recognition particle 54C	protein-coding	0.065000	0.587065	
mm_127551.1	chr15	102150269	102150469	+	1	NA	NA	NA	-206	NM_146064	223920	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	0.015000	0.517413	
mm_16502.1	chr2	181219927	181220127	+	1	NA	NA	NA	11	NM_199312	332713	Mm.23349	NM_199312	ENSMUSG00000047841	BC051628	1700026M20Rik|Fndc11	cDNA sequence BC051628	protein-coding	0.045000	0.641791	
mm_73280.1	chr8	104755612	104755812	+	1	NA	NA	NA	21709	NM_133960	102022	Mm.212983	NM_133960	ENSMUSG00000055730	Ces2a	9130231C15Rik|AI266984|Ces6	carboxylesterase 2A	protein-coding	0.015000	0.497512	
mm_114769.1	chr13	88821462	88821662	+	1	NA	NA	NA	90	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.100000	0.666667	
mm_20043.1	chr2	120137506	120137706	-	1	NA	NA	NA	16969	NM_133838	98878	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.005000	0.363184	
mm_99305.1	chr11	101376381	101376581	+	1	NA	NA	NA	8765	NM_008061	14377	Mm.18064	NM_008061	ENSMUSG00000078650	G6pc	AW107337|G6Pase|G6pt|Glc-6-Pase	glucose-6-phosphatase, catalytic	protein-coding	0.020000	0.557214	
mm_112397.1	chr12	119238729	119238929	-	1	NA	NA	NA	-553	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.055000	0.611940	
mm_144443.1	chr18	22171349	22171549	+	1	NA	NA	NA	-53	NM_027616	70950	Mm.235716	NM_027616	ENSMUSG00000024306	Ccdc178	4921528I01Rik	coiled coil domain containing 178	protein-coding	0.020000	0.601990	
mm_81832.1	chr9	118284288	118284488	+	1	NA	NA	NA	-134192	NM_026442	67899	Mm.9953	NM_026442	ENSMUSG00000039163	Cmc1	2010110K16Rik|2010312P05Rik|AI596001	COX assembly mitochondrial protein 1	protein-coding	0.005000	0.427861	-38(GACTCTTAAAAC,-,0.00)
mm_125986.1	chr15	76344288	76344488	+	1	NA	NA	NA	865	NM_025567	66445	Mm.29196	NM_025567	ENSMUSG00000022551	Cyc1	2610002H19Rik|AA408921|Cyct1	cytochrome c-1	protein-coding	0.045000	0.646766	
mm_91523.1	chr10	37138725	37138925	-	1	NA	NA	NA	101	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.030000	0.422886	
mm_40140.1	chr5	35166204	35166404	+	1	NA	NA	NA	-60607	NM_013587	16976	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.025000	0.537313	
mm_45476.1	chr5	69590693	69590893	-	1	NA	NA	NA	1492	NM_001038015	67980	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	0.010000	0.328358	
mm_84174.1	chr9	59949188	59949388	-	1	NA	NA	NA	791	NM_013708	23958	Mm.103641	NM_013708	ENSMUSG00000032292	Nr2e3	A930035N01Rik|PNR|RNR|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding	0.015000	0.582090	
mm_70774.1	chr8	22192693	22192893	+	1	NA	NA	NA	-67	NM_027338	70160	Mm.41453	NM_027338	ENSMUSG00000031479	Vps36	1700010A24Rik|2210415M20Rik|2810408E15Rik|Eap45	vacuolar protein sorting 36	protein-coding	0.110000	0.711443	
mm_76005.1	chr8	72492527	72492727	-	1	NA	NA	NA	-13	NM_177766	270066	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	0.160000	0.810945	
mm_141541.1	chr17	31857985	31858185	-	1	NA	NA	NA	-2293	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.010000	0.562189	
mm_34433.1	chr4	146101526	146101726	+	1	NA	NA	NA	4314	NM_001037926	626316	Mm.270762	NM_001037926	ENSMUSG00000066009	Zfp987	Gm13051|OTTMUSG00000010104|OTTMUSG00000010173	zinc finger protein 987	protein-coding	0.010000	0.502488	
mm_20460.1	chr2	129366013	129366213	-	1	NA	NA	NA	-3789	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.015000	0.517413	
mm_96225.1	chr11	62511846	62512046	+	1	NA	NA	NA	27315	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.005000	0.532338	
mm_153958.1	chr19	47691948	47692148	-	1	NA	NA	NA	-6	NM_001290825	12821	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	0.030000	0.432836	-90(CCGTCTATAAAG,-,0.00)
mm_11915.1	chr2	52071460	52071660	+	1	NA	NA	NA	-1277	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.030000	0.512438	
mm_63219.1	chr7	126293310	126293510	+	1	NA	NA	NA	20791	NM_145587	104175	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.005000	0.572139	
mm_100636.1	chr11	121718449	121718649	+	1	NA	NA	NA	16122	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.000000	0.522388	
mm_155870.1	chrX	101384537	101384737	+	1	NA	NA	NA	905	NM_001302497	14618	Mm.21198	NM_008124	ENSMUSG00000047797	Gjb1	Cnx32|Cx32|connexin-32	gap junction protein, beta 1	protein-coding	0.040000	0.567164	
mm_137253.1	chr17	24548609	24548809	+	1	NA	NA	NA	-1241	NM_013630	18763	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystic kidney disease 1 homolog	protein-coding	0.020000	0.388060	
mm_51725.1	chr6	86949451	86949651	+	1	NA	NA	NA	-60285	NM_001170591	56748	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	0.015000	0.383085	
mm_87708.1	chr10	60002734	60002934	+	1	NA	NA	NA	29	NM_026937	69090	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0.090000	0.666667	
mm_57383.1	chr6	124817916	124818116	-	1	NA	NA	NA	-3720	NM_009415	21991	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.035000	0.542289	
mm_96062.1	chr11	59634095	59634295	+	1	NA	NA	NA	21229	NM_001011740	257886	Mm.457883	NM_001011740	ENSMUSG00000044061	Olfr225	MOR256-51	olfactory receptor 225	protein-coding	0.015000	0.552239	
mm_98296.1	chr11	89715259	89715459	+	1	NA	NA	NA	-18423	NM_001327810	382543	Mm.60997	NM_172534	ENSMUSG00000047773	Ankfn1	4932411E22Rik|Gm1175|nmf9	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding	0.000000	0.487562	-36(CCCTATAAAAGG,-,0.00)
mm_25889.1	chr3	131110208	131110408	+	1	NA	NA	NA	11	NM_001276402	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.095000	0.721393	
mm_125910.1	chr15	76009810	76010010	+	1	NA	NA	NA	-412	NM_001168253	105732	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	0.065000	0.656716	
mm_168683.1	chr11	95842082	95842282	-	1	NA	NA	NA	-113	NM_023121	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.030000	0.616915	
mm_86219.1	chr9	120091039	120091239	-	1	NA	NA	NA	-994	NM_007720	12776	Mm.442098	NM_007720	ENSMUSG00000042262	Ccr8	C-C|C-C CKR-8|CC-CKR-8|CCR-8|CKR-8|Cmkbr8|mCCR8	chemokine (C-C motif) receptor 8	protein-coding	0.015000	0.547264	
mm_131322.1	chr16	12261165	12261365	+	1	NA	NA	NA	277152	NM_001174086	72555	Mm.310139	NM_028277	ENSMUSG00000022494	Shisa9	2700045P11Rik|Ckamp44	shisa family member 9	protein-coding	0.005000	0.407960	
mm_62205.1	chr7	97830892	97831092	+	1	NA	NA	NA	-11947	NM_011035	18479	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding	0.005000	0.537313	
mm_92695.1	chr10	80668613	80668813	-	1	NA	NA	NA	7580	NM_021462	17347	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.030000	0.611940	
mm_90320.1	chr10	127064198	127064398	+	1	NA	NA	NA	695	NM_009870	12567	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	0.035000	0.557214	
mm_35776.1	chr4	46403981	46404181	-	1	NA	NA	NA	102	NM_053149	93966	Mm.25793	NM_053149	ENSMUSG00000028332	Hemgn	4921524M03Rik|AI317176|EDAG|Hgn|mNDR	hemogen	protein-coding	0.010000	0.407960	34(GCTTTTAGGCTG,+,0.00)
mm_87796.1	chr10	60299828	60300028	+	1	NA	NA	NA	15467	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.030000	0.597015	
mm_96969.1	chr11	70647812	70648012	+	1	NA	NA	NA	625	NM_027445	70510	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0.075000	0.626866	
mm_106596.1	chr11	120730759	120730959	-	1	NA	NA	NA	1162	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.030000	0.567164	
mm_108102.1	chr12	75220240	75220440	+	1	NA	NA	NA	-43008	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0.000000	0.487562	-19(TCTTAAAGAGAC,+,0.00)
mm_168109.1	chr10	14746191	14746391	-	1	NA	NA	NA	-13998	NM_008703	18101	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.020000	0.482587	
mm_33838.1	chr4	135728053	135728253	+	1	NA	NA	NA	-6	NM_178257	230828	Mm.261647	NM_178257	ENSMUSG00000037157	Il22ra1	9130219A07Rik|ENSMUSG00000073746|IL-22R|Il22r	interleukin 22 receptor, alpha 1	protein-coding	0.035000	0.651741	
mm_95290.1	chr11	45980223	45980423	+	1	NA	NA	NA	13	NM_173384	214105	Mm.66708	NM_173384	ENSMUSG00000040489	Sox30	-	SRY (sex determining region Y)-box 30	protein-coding	0.140000	0.776119	
mm_116976.1	chr13	56178951	56179151	-	1	NA	NA	NA	-166	NM_001168615	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.010000	0.547264	
mm_126503.1	chr15	81776176	81776376	+	1	NA	NA	NA	-26397	NM_153484	21685	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.025000	0.606965	
mm_69385.1	chr7	131329399	131329599	-	1	NA	NA	NA	0	NM_027037	69318	Mm.233840	NM_027037	ENSMUSG00000030858	1700007K09Rik	-	RIKEN cDNA 1700007K09 gene	protein-coding	0.015000	0.432836	-86(GCTTTTAGATGA,+,0.00)
mm_148692.1	chr19	5741213	5741413	+	1	NA	NA	NA	409	NM_008520	16998	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0.015000	0.592040	
mm_46546.1	chr5	106458363	106458563	-	1	NA	NA	NA	-297	NM_001005477	104382	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH-like 2 (Drosophila)	protein-coding	0.195000	0.805970	
mm_24402.1	chr3	90359400	90359600	+	1	NA	NA	NA	17846	NM_139304	229542	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	0.000000	0.457711	
mm_28836.1	chr3	96579856	96580056	-	1	NA	NA	NA	-13155	NR_040409	100038464	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	ENSMUSG00000074398|OTTMUSG00000021867	predicted gene 15441	ncRNA	0.030000	0.517413	
mm_119356.1	chr14	41114773	41114973	+	1	NA	NA	NA	9840	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.025000	0.477612	
mm_73724.1	chr8	112569930	112570130	+	1	NA	NA	NA	-13	NM_130457	170571	Mm.209232	NM_130457	ENSMUSG00000031772	Cntnap4	Caspr4|E130114F09Rik	contactin associated protein-like 4	protein-coding	0.030000	0.577114	
mm_9986.1	chr1	191270081	191270281	-	1	NA	NA	NA	47937	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.005000	0.477612	
mm_48398.1	chr5	140117965	140118165	-	1	NA	NA	NA	203487	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.000000	0.482587	
mm_82445.1	chr9	15301580	15301780	-	1	NA	NA	NA	-73	NM_133732	70984	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0.005000	0.527363	
mm_90869.1	chr10	8886434	8886634	-	1	NA	NA	NA	-464	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.070000	0.552239	-33(CCTCTTAAACTC,+,0.00)
mm_34384.1	chr4	144920698	144920898	+	1	NA	NA	NA	27661	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.020000	0.522388	
mm_5764.1	chr1	46925695	46925895	-	1	NA	NA	NA	-72286	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.005000	0.402985	
mm_33066.1	chr4	123282657	123282857	+	1	NA	NA	NA	-154	NM_130881	230721	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	0.095000	0.686567	-4(GGGTATAAATGG,-,0.00)
mm_82231.1	chr9	3035817	3036017	-	1	NA	NA	NA	2826	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.010000	0.333333	
mm_162152.1	chrX	79516957	79517157	-	1	NA	NA	NA	228	NM_001099307	636104	Mm.459420	NM_001099307	ENSMUSG00000073077	Gm7173	EG636104	predicted gene 7173	protein-coding	0.020000	0.477612	
mm_34290.1	chr4	141572167	141572367	+	1	NA	NA	NA	26105	NR_030695	320456	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.025000	0.542289	
mm_77636.1	chr8	124152827	124153027	-	1	NA	NA	NA	-78467	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0.015000	0.417910	
mm_169115.1	chr13	49544360	49544560	+	1	NA	NA	NA	17	NM_025711	66695	Mm.383216	NM_025711	ENSMUSG00000021388	Aspn	4631401G09Rik|AA986886|Plap1|Slrr1c	asporin	protein-coding	0.010000	0.388060	
mm_1642.1	chr1	74544256	74544456	+	1	NA	NA	NA	-4	NM_148937	18802	Mm.290731	NM_148937	ENSMUSG00000026173	Plcd4	4921507K24Rik	phospholipase C, delta 4	protein-coding	0.015000	0.442786	
mm_120424.1	chr14	65396542	65396742	+	1	NA	NA	NA	28830	NM_001205075	18155	Mm.16347	NM_010932	ENSMUSG00000045731	Pnoc	N/OFQ|Npnc1|OFQ/N	prepronociceptin	protein-coding	0.010000	0.492537	
mm_160201.1	chr7	81092144	81092344	+	1	NA	NA	NA	-22555	NM_001004184	434203	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	0.025000	0.537313	
mm_105240.1	chr11	102319246	102319446	-	1	NA	NA	NA	-250	NM_011551	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.090000	0.626866	
mm_124.1	chr1	9848178	9848378	+	1	NA	NA	NA	-3	NM_001037759	170755	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.095000	0.741294	
mm_105017.1	chr11	100440881	100441081	-	1	NA	NA	NA	108	NM_026561	68106	Mm.28738	NM_026561	ENSMUSG00000017176	Nt5c3b	2610037D24Rik|AI841843|C330027I04Rik|Nt5c3l	5'-nucleotidase, cytosolic IIIB	protein-coding	0.110000	0.716418	
mm_140370.1	chr17	86963238	86963438	+	1	NA	NA	NA	227	NM_145491	104215	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.140000	0.800995	
mm_156903.1	chrX	168997429	168997629	+	1	NA	NA	NA	-39082	NM_178754	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.005000	0.343284	
mm_140517.1	chr17	6008646	6008846	-	1	NA	NA	NA	1166	NM_001290698	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.035000	0.542289	
mm_168262.1	chr10	90248848	90249048	+	1	NA	NA	NA	-326779	NM_001177397	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.025000	0.462687	-74(TCATTTAAAAGG,-,0.00),-55(CACCATATAGGG,-,0.00)
mm_152851.1	chr19	24125728	24125928	-	1	NA	NA	NA	48312	NM_001198985	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.010000	0.452736	
mm_150942.1	chr19	46306149	46306349	+	1	NA	NA	NA	319	NM_001177370	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.015000	0.557214	
mm_90904.1	chr10	11081012	11081212	-	1	NA	NA	NA	1219	NM_001114333	14816	Mm.391904	NM_016976	ENSMUSG00000019828	Grm1	4930455H15Rik|ENSMUSG00000075319|Gm10828|Gprc1a|mGluR1|nmf373|rcw|wobl	glutamate receptor, metabotropic 1	protein-coding	0.030000	0.562189	
mm_33181.1	chr4	126096587	126096787	+	1	NA	NA	NA	34	NM_138721	116748	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	0.090000	0.661692	
mm_34805.1	chr4	154869465	154869665	+	1	NA	NA	NA	-20	NM_013783	27390	Mm.116944	NM_013783	ENSMUSG00000058183	Mmel1	Mell1|NEP2|NEPII|Nl1|SEP	membrane metallo-endopeptidase-like 1	protein-coding	0.025000	0.587065	
mm_123396.1	chr14	63418361	63418561	-	1	NA	NA	NA	-1274	NM_007549	12143	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.015000	0.492537	
mm_23494.1	chr3	60513434	60513634	+	1	NA	NA	NA	12355	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.020000	0.452736	
mm_136903.1	chr17	13015425	13015625	+	1	NA	NA	NA	7686	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.000000	0.373134	
mm_36930.1	chr4	108406611	108406811	-	1	NA	NA	NA	2	NM_024198	67305	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	0.105000	0.721393	
mm_80804.1	chr9	96278771	96278971	+	1	NA	NA	NA	19623	NM_001184710	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.005000	0.343284	
mm_169409.1	chr14	52055709	52055909	-	1	NA	NA	NA	-13506	NR_028552	100217457		NR_028552	ENSMUSG00000064871	Snord58b	MBII-199	small nucleolar RNA, C/D box 58B	snoRNA	0.005000	0.492537	
mm_169008.1	chr13	106338656	106338856	+	1	NA	NA	NA	598159	NM_029665	76582	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.005000	0.512438	-33(GCTTTAAGACTC,+,0.00)
mm_163783.1	chr13	120262967	120263167	+	1	NA	NA	NA	-28	NM_001310627	236546	Mm.247428	NM_199060	ENSMUSG00000095071	AF067061	-	cDNA sequence AF067061	protein-coding	0.000000	0.442786	-33(GCCTATATAAGA,-,0.00)
mm_169553.1	chr15	103243539	103243739	+	1	NA	NA	NA	3185	NR_002883	434858	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.005000	0.417910	-24(CCTTTTCTAGGA,+,0.00)
mm_155508.1	chrX	73891724	73891924	+	1	NA	NA	NA	-278	NM_001276299	12000	Mm.383171	NM_019404	ENSMUSG00000031390	Avpr2	ADHR|DI1|DIR|ND1|V2R|VPV2R	arginine vasopressin receptor 2	protein-coding	0.020000	0.587065	
mm_81129.1	chr9	106499838	106500038	+	1	NA	NA	NA	-29	NM_028843	74267	Mm.116682	NM_028843	ENSMUSG00000066383	Iqcf1	1700055J15Rik	IQ motif containing F1	protein-coding	0.010000	0.492537	-99(GCATTTATGGCA,+,0.00)
mm_110763.1	chr12	70227342	70227542	-	1	NA	NA	NA	241	NM_133198	110095	Mm.256926	NM_133198	ENSMUSG00000021069	Pygl	-	liver glycogen phosphorylase	protein-coding	0.075000	0.597015	
mm_34706.1	chr4	152113740	152113940	+	1	NA	NA	NA	-2094	NM_001291010	85030	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0.035000	0.557214	
mm_101148.1	chr11	16592796	16592996	-	1	NA	NA	NA	-84412	NM_001109971	20335	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0.010000	0.542289	-33(CACTATAAAAGG,-,0.00)
mm_121128.1	chr14	101840749	101840949	+	1	NA	NA	NA	226	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.025000	0.407960	
mm_58495.1	chr7	3704124	3704324	+	1	NA	NA	NA	183	NM_029767	76846	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	0.055000	0.482587	
mm_152716.1	chr19	17511303	17511503	-	1	NA	NA	NA	117360	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.015000	0.562189	
mm_119856.1	chr14	54463805	54464005	+	1	NA	NA	NA	-242	NM_022993	65107	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	0.045000	0.477612	
mm_24214.1	chr3	88629405	88629605	+	1	NA	NA	NA	8111	NM_001198912	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.045000	0.631841	
mm_42922.1	chr5	122720278	122720478	+	1	NA	NA	NA	12834	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.000000	0.512438	
mm_93246.1	chr10	95416959	95417159	-	1	NA	NA	NA	-202	NM_007706	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.055000	0.651741	
mm_34673.1	chr4	150929602	150929802	+	1	NA	NA	NA	1703	NM_001077509	21942	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.015000	0.532338	
mm_110462.1	chr12	51773375	51773575	-	1	NA	NA	NA	56061	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.005000	0.472637	
mm_134669.1	chr16	22265434	22265634	-	1	NA	NA	NA	471	NM_001330554	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding	0.130000	0.681592	
mm_116929.1	chr13	55773264	55773464	-	1	NA	NA	NA	-11215	NM_029772	76856	Mm.159795	NM_029772	ENSMUSG00000021499	Catsper3	4921522D01Rik|CACRC	cation channel, sperm associated 3	protein-coding	0.010000	0.532338	
mm_138194.1	chr17	34286095	34286295	+	1	NA	NA	NA	1576	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.010000	0.487562	-34(GGCTTTATATAC,-,0.00)
mm_153123.1	chr19	33788463	33788663	-	1	NA	NA	NA	-1111	NM_001323065	329055	Mm.353851	NM_001323065	ENSMUSG00000079342	Lipo1	EG329055|Gm5097	lipase, member O1	protein-coding	0.005000	0.293532	-51(TTCTATAAAAGG,-,0.00)
mm_50876.1	chr6	55467341	55467541	+	1	NA	NA	NA	15463	NM_007407	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	0.000000	0.353234	
mm_131365.1	chr16	13813213	13813413	+	1	NA	NA	NA	-5938	NM_010946	18203	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0.015000	0.547264	
mm_30294.1	chr3	148990012	148990212	-	1	NA	NA	NA	-35477	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.110000	0.741294	
mm_56744.1	chr6	115853221	115853421	-	1	NA	NA	NA	20	NM_010774	17193	Mm.259308	NM_010774	ENSMUSG00000030322	Mbd4	Med1	methyl-CpG binding domain protein 4	protein-coding	0.050000	0.592040	
mm_7028.1	chr1	87099040	87099240	-	1	NA	NA	NA	2466	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.015000	0.487562	
mm_87934.1	chr10	62672221	62672421	+	1	NA	NA	NA	-10187	NR_106074	102465987		NR_106074	ENSMUSG00000105329	Mir7215	mmu-mir-7215	microRNA 7215	ncRNA	0.010000	0.412935	
mm_163140.1	chr11	80177379	80177579	+	1	NA	NA	NA	-6393	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.000000	0.447761	
mm_152933.1	chr19	28560921	28561121	-	1	NA	NA	NA	-117203	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.000000	0.497512	
mm_156927.1	chrX	169303419	169303619	+	1	NA	NA	NA	16853	NM_001331050	15159	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	0.005000	0.383085	
mm_76823.1	chr8	104623807	104624007	-	1	NA	NA	NA	489	NM_007663	12556	Mm.19423	NM_007663	ENSMUSG00000031881	Cdh16	-	cadherin 16	protein-coding	0.005000	0.497512	
mm_83707.1	chr9	50728023	50728223	-	1	NA	NA	NA	-139	NM_178118	330938	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	0.115000	0.691542	
mm_155221.1	chrX	57053759	57053959	+	1	NA	NA	NA	25	NM_029371	72459	Mm.2152	NM_028242	ENSMUSG00000067873	Htatsf1	1600023H17Rik|2600017A12Rik|2700077B20Rik|TAT-SF1	HIV TAT specific factor 1	protein-coding	0.080000	0.696517	
mm_77805.1	chr9	3035790	3035990	+	1	NA	NA	NA	2853	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.010000	0.333333	
mm_127799.1	chr15	3984753	3984953	-	1	NA	NA	NA	-5280	NM_134099	106052	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	0.000000	0.383085	6(CTCTATTTATGC,-,0.00),24(CTGTTTTAAAGG,-,0.00),26(GTTTTAAAGGAG,+,0.00)
mm_56670.1	chr6	113654110	113654310	-	1	NA	NA	NA	15743	NM_001113553	108960	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.030000	0.502488	
mm_73100.1	chr8	94568328	94568528	+	1	NA	NA	NA	33298	NM_028221	102122	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	0.030000	0.547264	
mm_48143.1	chr5	137150421	137150621	-	1	NA	NA	NA	-34314	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.472637	
mm_135622.1	chr16	52273344	52273544	-	1	NA	NA	NA	179637	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.422886	-99(CTGTTTAAAAGA,-,0.00)
mm_71495.1	chr8	46788255	46788455	+	1	NA	NA	NA	48610	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.005000	0.268657	
mm_162622.1	chr1	183418410	183418610	+	1	NA	NA	NA	40	NM_030175	78772	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0.025000	0.616915	
mm_128791.1	chr15	66811981	66812181	-	1	NA	NA	NA	19748	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.005000	0.497512	
mm_63340.1	chr7	126961655	126961855	+	1	NA	NA	NA	11220	NM_001252566	233878	Mm.283926	NM_144926	ENSMUSG00000030683	Sez6l2	AI835913|AW121566|BSRP-A|Psk1	seizure related 6 homolog like 2	protein-coding	0.015000	0.502488	
mm_53688.1	chr6	142404980	142405180	+	1	NA	NA	NA	-8351	NM_001242345	319552	Mm.39649	NM_001242345	ENSMUSG00000071112	Spx	B230216G23Rik|Npq	spexin hormone	protein-coding	0.010000	0.303483	
mm_55689.1	chr6	72770961	72771161	-	1	NA	NA	NA	17984	NM_001079822	21415	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.000000	0.378109	
mm_48353.1	chr5	139345030	139345230	-	1	NA	NA	NA	36	NM_197980	68033	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	0.110000	0.656716	
mm_93942.1	chr10	127195110	127195310	-	1	NA	NA	NA	-39	NR_045715	100038591	Mm.441071	NR_045715	ENSMUSG00000097331	F420014N23Rik	ENSMUSG00000074658	RIKEN cDNA F420014N23 gene	ncRNA	0.035000	0.616915	
mm_34468.1	chr4	148149119	148149319	+	1	NA	NA	NA	-2223	NR_105989	102465619		NR_105989	ENSMUSG00000099043	Mir7022	Gm27291|mmu-mir-7022	microRNA 7022	ncRNA	0.035000	0.507463	
mm_83026.1	chr9	37238700	37238900	-	1	NA	NA	NA	16938	NM_020258	56857	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.005000	0.447761	
mm_36208.1	chr4	62434590	62434790	-	1	NA	NA	NA	36	NM_153504	76072	Mm.169565	NM_153504	ENSMUSG00000063851	Rnf183	5830442J12Rik	ring finger protein 183	protein-coding	0.005000	0.507463	
mm_83869.1	chr9	55026416	55026616	-	1	NA	NA	NA	43	NM_145129	110834	Mm.63569	NM_145129	ENSMUSG00000032303	Chrna3	(a)3|A730007P14Rik|Acra-3|Acra3	cholinergic receptor, nicotinic, alpha polypeptide 3	protein-coding	0.110000	0.716418	
mm_99137.1	chr11	100320466	100320666	+	1	NA	NA	NA	617	NM_011508	20918	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.045000	0.621891	
mm_78167.1	chr9	21029349	21029549	+	1	NA	NA	NA	76	NM_023892	78369	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.070000	0.661692	
mm_86252.1	chr9	121489924	121490124	-	1	NA	NA	NA	5670	NM_001284508	12424	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.045000	0.522388	
mm_43612.1	chr5	137989702	137989902	+	1	NA	NA	NA	8281	NM_013478	12007	Mm.30061	NM_013478	ENSMUSG00000037053	Azgp1	Zag	alpha-2-glycoprotein 1, zinc	protein-coding	0.005000	0.487562	
mm_64258.1	chr7	141745349	141745549	+	1	NA	NA	NA	-43562	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.005000	0.492537	
mm_95929.1	chr11	58377444	58377644	+	1	NA	NA	NA	-1488	NM_027339	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.000000	0.407960	74(CACTTGATAAGG,-,0.00)
mm_98870.1	chr11	97799492	97799692	+	1	NA	NA	NA	-80	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.110000	0.731343	
mm_164145.1	chr15	59650174	59650374	-	1	NA	NA	NA	1620	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.035000	0.582090	
mm_34208.1	chr4	140949971	140950171	+	1	NA	NA	NA	7831	NR_045911	100126227	Mm.404073	NR_045911	ENSMUSG00000087698	Gm13031	OTTMUSG00000010081	predicted gene 13031	ncRNA	0.000000	0.557214	
mm_163123.1	chr11	76904368	76904568	+	1	NA	NA	NA	-77	NM_025655	66601	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.005000	0.338308	
mm_42599.1	chr5	117417599	117417799	+	1	NA	NA	NA	3697	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.005000	0.517413	
mm_139559.1	chr17	56878539	56878739	+	1	NA	NA	NA	3006	NM_030141	78625	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0.010000	0.432836	
mm_72395.1	chr8	81767855	81768055	+	1	NA	NA	NA	425393	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.015000	0.432836	
mm_56021.1	chr6	86570738	86570938	-	1	NA	NA	NA	43437	NR_037961	72012	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.020000	0.582090	
mm_59228.1	chr7	24640108	24640308	+	1	NA	NA	NA	3638	NM_133743	72434	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	0.055000	0.646766	
mm_55597.1	chr6	71632822	71633022	-	1	NA	NA	NA	-5	NM_001038695	104263	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0.095000	0.686567	
mm_102915.1	chr11	69580143	69580343	-	1	NA	NA	NA	-116	NM_011640	22059	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.040000	0.527363	
mm_68435.1	chr7	109927239	109927439	-	1	NA	NA	NA	33083	NM_021494	19347	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	0.020000	0.398010	
mm_161251.1	chr13	103769359	103769559	-	1	NA	NA	NA	-4877	NM_172592	218543	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0.010000	0.318408	
mm_134639.1	chr16	21762510	21762710	-	1	NA	NA	NA	25224	NM_023737	74147	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0.025000	0.547264	
mm_164664.1	chr17	43630540	43630740	-	1	NA	NA	NA	-341	NM_001161367	210510	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	0.045000	0.572139	
mm_7660.1	chr1	128417126	128417326	-	1	NA	NA	NA	190	NM_177445	226414	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	0.075000	0.651741	
mm_45623.1	chr5	75979118	75979318	-	1	NA	NA	NA	-790	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.015000	0.572139	
mm_14837.1	chr2	147373756	147373956	+	1	NA	NA	NA	8862	NM_008780	18503	Mm.315502	NM_008780	ENSMUSG00000037034	Pax1	Pax-1|hbs|hunchback|un|undulated|wt	paired box 1	protein-coding	0.055000	0.631841	
mm_24005.1	chr3	87357823	87358023	+	1	NA	NA	NA	42	NM_009690	11801	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	0.005000	0.527363	
mm_100733.1	chr11	3983213	3983413	-	1	NA	NA	NA	-323	NM_001177703	53897	Mm.103414	NM_016922	ENSMUSG00000049721	Gal3st1	Cst|Gcst	galactose-3-O-sulfotransferase 1	protein-coding	0.010000	0.547264	-35(CCTTTTATGGAC,+,0.00)
mm_47256.1	chr5	121660315	121660515	-	1	NA	NA	NA	95	NM_028037	71985	Mm.45423	NM_028037	ENSMUSG00000029456	Acad10	2410021P16Rik	acyl-Coenzyme A dehydrogenase family, member 10	protein-coding	0.070000	0.597015	
mm_78382.1	chr9	28148183	28148383	+	1	NA	NA	NA	357014	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.005000	0.293532	
mm_6925.1	chr1	84849907	84850107	-	1	NA	NA	NA	10166	NM_025386	66153	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.015000	0.517413	
mm_4300.1	chr1	171800362	171800562	+	1	NA	NA	NA	33330	NM_013730	27218	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	0.005000	0.398010	0(CATTTTATAGCC,+,0.00)
mm_103908.1	chr11	83578491	83578691	-	1	NA	NA	NA	45	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.005000	0.477612	
mm_104581.1	chr11	96968564	96968764	-	1	NA	NA	NA	9024	NM_030220	78912	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.015000	0.587065	
mm_109085.1	chr12	104413742	104413942	+	1	NA	NA	NA	7134	NM_009252	20716	Mm.482074	NM_009252	ENSMUSG00000021091	Serpina3n	Spi2-2|Spi2.2|Spi2/eb.4	serine (or cysteine) peptidase inhibitor, clade A, member 3N	protein-coding	0.000000	0.522388	
mm_67159.1	chr7	73541628	73541828	-	1	NA	NA	NA	18	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.035000	0.557214	
mm_20519.1	chr2	130714196	130714396	-	1	NA	NA	NA	-16777	NM_001081162	269356	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	0.000000	0.537313	6(GCCTTTAGGCCC,+,0.00)
mm_114418.1	chr13	64367874	64368074	+	1	NA	NA	NA	2546	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.015000	0.467662	
mm_28986.1	chr3	101287450	101287650	-	1	NA	NA	NA	389	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.030000	0.437811	-34(GAGTTTAAAAGG,-,0.00)
mm_157212.1	chrX	12762023	12762223	-	1	NA	NA	NA	-150	NM_001048208	26896	Mm.17616	NM_012005	ENSMUSG00000064127	Med14	9930001L01Rik|AU041628|Crsp2|ENSMUSG00000073278|Gm641|ORF1|Trap170	mediator complex subunit 14	protein-coding	0.110000	0.731343	
mm_12796.1	chr2	79635563	79635763	+	1	NA	NA	NA	238	NM_080558	70599	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0.110000	0.701493	
mm_141726.1	chr17	34116136	34116336	-	1	NA	NA	NA	3664	NR_037970	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.000000	0.378109	43(GCTTATATAGTA,+,0.00)
mm_49334.1	chr6	21283323	21283523	+	1	NA	NA	NA	67314	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.000000	0.253731	24(TACTTTAAAAGA,-,0.00),25(ACTTTAAAAGAG,+,0.00)
mm_24911.1	chr3	96245438	96245638	+	1	NA	NA	NA	41	NM_013549	15267	Mm.5220	NM_013549	ENSMUSG00000064220	Hist2h2aa1	AI448581|H2a-614|H2a-615|Hist2	histone cluster 2, H2aa1	protein-coding	0.120000	0.616915	-33(GTCTATAAAAGA,-,0.00)
mm_77903.1	chr9	7348810	7349010	+	1	NA	NA	NA	1536	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.015000	0.393035	
mm_171252.1	chr3	79591450	79591650	+	1	NA	NA	NA	161	NM_026352	67738	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	0.105000	0.696517	
mm_171732.1	chr4	93693123	93693323	+	1	NA	NA	NA	-357712	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.025000	0.427861	
mm_45328.1	chr5	65492811	65493011	-	1	NA	NA	NA	-76	NM_133697	68552	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.120000	0.696517	
mm_25780.1	chr3	126597256	126597456	+	1	NA	NA	NA	405	NM_023813	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.145000	0.741294	
mm_16784.1	chr2	9889931	9890131	-	1	NA	NA	NA	-491	NR_040511	77682	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA	0.075000	0.611940	
mm_22350.1	chr2	180920845	180921045	-	1	NA	NA	NA	-9	NM_173761	228994	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	0.155000	0.726368	
mm_36095.1	chr4	58499320	58499520	-	1	NA	NA	NA	-17	NM_001290486	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.015000	0.442786	
mm_9175.1	chr1	171053895	171054095	-	1	NA	NA	NA	5408	NM_010188	14131	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	0.010000	0.422886	
mm_150397.1	chr19	36463945	36464145	+	1	NA	NA	NA	84978	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.010000	0.467662	
mm_4342.1	chr1	171856654	171856854	+	1	NA	NA	NA	17057	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.015000	0.333333	
mm_8606.1	chr1	156035786	156035986	-	1	NA	NA	NA	-150	NM_001160182	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.105000	0.651741	
mm_85778.1	chr9	109058154	109058354	-	1	NA	NA	NA	997	NM_001012236	22040	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	0.030000	0.582090	
mm_70042.1	chr7	142577793	142577993	-	1	NA	NA	NA	253	NR_130974	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.035000	0.572139	
mm_3548.1	chr1	150407418	150407618	+	1	NA	NA	NA	-14463	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.040000	0.517413	
mm_24127.1	chr3	88206705	88206905	+	1	NA	NA	NA	-8366	NR_037276	100526540		NR_037276	ENSMUSG00000092988	Mir3093	mir-3093|mmu-mir-3093	microRNA 3093	ncRNA	0.005000	0.517413	
mm_128743.1	chr15	64312564	64312764	-	1	NA	NA	NA	9	NM_001276462	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.195000	0.835821	
mm_63539.1	chr7	128003857	128004057	+	1	NA	NA	NA	-421	NM_001079932	434246	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	0.005000	0.537313	
mm_15323.1	chr2	155751015	155751215	+	1	NA	NA	NA	-102	NM_011171	19124	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	0.060000	0.661692	
mm_97758.1	chr11	80821138	80821338	+	1	NA	NA	NA	10823	NM_029537	103743	Mm.27682	NM_029537	ENSMUSG00000035413	Tmem98	6530411B15Rik|AI463522	transmembrane protein 98	protein-coding	0.025000	0.577114	
mm_134709.1	chr16	22892227	22892427	-	1	NA	NA	NA	312	NM_001276449	11625	Mm.197554	NM_013465	ENSMUSG00000022868	Ahsg	-	alpha-2-HS-glycoprotein	protein-coding	0.015000	0.487562	
mm_164592.1	chr17	26535733	26535933	+	1	NA	NA	NA	-25679	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.005000	0.507463	
mm_172554.1	chr8	105225137	105225337	+	1	NA	NA	NA	49	NM_145604	234678	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	0.100000	0.666667	
mm_4380.1	chr1	172157433	172157633	+	1	NA	NA	NA	9518	NM_153555	98193	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	0.015000	0.442786	
mm_146828.1	chr18	21651983	21652183	-	1	NA	NA	NA	285	NM_001081403	225266	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	0.045000	0.706468	
mm_110382.1	chr12	40222006	40222206	-	1	NA	NA	NA	705	NR_035459	100316693		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0.010000	0.378109	
mm_146208.1	chr18	76856219	76856419	+	1	NA	NA	NA	-86	NM_001109743	664805	Mm.329543	NM_001109743	ENSMUSG00000091519	Skor2	Corl2|EG664805|Fussel18|Gm7348	SKI family transcriptional corepressor 2	protein-coding	0.085000	0.666667	
mm_47137.1	chr5	120543859	120544059	-	1	NA	NA	NA	32767	NM_001177594	170756	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.015000	0.502488	
mm_32849.1	chr4	117974934	117975134	+	1	NA	NA	NA	-45271	NM_001284192	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.010000	0.517413	
mm_145111.1	chr18	44200747	44200947	+	1	NA	NA	NA	-4670	NM_001048217	433181	Mm.117440	NM_001048217	ENSMUSG00000073573	Spink11	9230112K01Rik	serine peptidase inhibitor, Kazal type 11	protein-coding	0.010000	0.402985	
mm_78381.1	chr9	27791206	27791406	+	1	NA	NA	NA	37	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.055000	0.597015	
mm_147195.1	chr18	37644121	37644321	-	1	NA	NA	NA	-17	NM_175770	24074	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TATA-box binding protein associated factor 7	protein-coding	0.125000	0.597015	
mm_97257.1	chr11	75758784	75758984	+	1	NA	NA	NA	25997	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.000000	0.402985	87(ATGTTTTAAAGG,-,0.00)
mm_105055.1	chr11	100703971	100704171	-	1	NA	NA	NA	200	NM_030150	80861	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0.025000	0.542289	
mm_122571.1	chr14	50807614	50807814	-	1	NA	NA	NA	57	NR_002142	85029		NR_002142	ENSMUSG00000092837	Rpph1	Gm24821|H1RNA|Rmrp5|Rpr	ribonuclease P RNA component H1	ncRNA	0.070000	0.646766	
mm_150553.1	chr19	39324922	39325122	+	1	NA	NA	NA	37937	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.020000	0.502488	
mm_26986.1	chr3	25697926	25698126	-	1	NA	NA	NA	455281	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.313433	
mm_156898.1	chrX	167207358	167207558	+	1	NA	NA	NA	1760	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.030000	0.393035	
mm_122856.1	chr14	54874954	54875154	-	1	NA	NA	NA	2484	NM_001167908	105651	Mm.297365	NM_001167908	ENSMUSG00000072494	Ppp1r3e	A630071A11Rik|AW049239|Gm1211	protein phosphatase 1, regulatory (inhibitor) subunit 3E	protein-coding	0.000000	0.477612	
mm_101769.1	chr11	43836393	43836593	-	1	NA	NA	NA	-4	NM_007416	11548	Mm.39086	NM_007416	ENSMUSG00000050541	Adra1b	[a]1b	adrenergic receptor, alpha 1b	protein-coding	0.110000	0.731343	
mm_35256.1	chr4	19878062	19878262	-	1	NA	NA	NA	44404	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.005000	0.363184	
mm_135077.1	chr16	34262932	34263132	-	1	NA	NA	NA	250995	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.040000	0.606965	
mm_84540.1	chr9	67290190	67290390	-	1	NA	NA	NA	-53564	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	0.010000	0.497512	
mm_41900.1	chr5	105531528	105531728	+	1	NA	NA	NA	12157	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.005000	0.407960	
mm_33910.1	chr4	136332460	136332660	+	1	NA	NA	NA	21618	NM_001277123	74326	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	0.020000	0.477612	
mm_40732.1	chr5	66195481	66195681	+	1	NA	NA	NA	-4246	NR_040695	73639	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA	0.030000	0.567164	
mm_148257.1	chr18	80860818	80861018	-	1	NA	NA	NA	73140	NM_001201569	50771	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	0.015000	0.472637	
mm_98829.1	chr11	97415433	97415633	+	1	NA	NA	NA	-34627	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.075000	0.696517	
mm_169418.1	chr14	53091110	53091310	+	1	NA	NA	NA	-595515	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.000000	0.442786	
mm_167258.1	chr8	25754164	25754364	-	1	NA	NA	NA	16	NM_028102	72108	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	0.140000	0.776119	
mm_127150.1	chr15	98567871	98568071	+	1	NA	NA	NA	-335	NM_009833	12455	Mm.29941	NM_009833	ENSMUSG00000011960	Ccnt1	2810478G24Rik|AI115585|CycT1	cyclin T1	protein-coding	0.120000	0.641791	-34(GTTCTTTAAAGG,-,0.00),-32(TCTTTAAAGGTC,+,0.00)
mm_57854.1	chr6	129486869	129487069	-	1	NA	NA	NA	-14190	NR_132130	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.005000	0.447761	
mm_24049.1	chr3	87906245	87906445	+	1	NA	NA	NA	24	NM_008231	15191	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0.130000	0.701493	
mm_126068.1	chr15	77356999	77357199	+	1	NA	NA	NA	42011	NM_029419	75761	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	0.045000	0.437811	83(TTCTTTAAAAAC,-,0.00)
mm_121870.1	chr14	20793889	20794089	-	1	NA	NA	NA	99	NM_001039138	12325	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	0.130000	0.711443	
mm_22425.1	chr2	181597495	181597695	-	1	NA	NA	NA	1552	NM_172676	229011	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	0.015000	0.552239	
mm_29734.1	chr3	126831370	126831570	-	1	NA	NA	NA	111916	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.010000	0.547264	
mm_81427.1	chr9	109057154	109057354	+	1	NA	NA	NA	1997	NM_001012236	22040	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	0.010000	0.532338	
mm_86578.1	chr10	12974712	12974912	+	1	NA	NA	NA	-10553	NM_001163591	74732	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.015000	0.407960	
mm_85028.1	chr9	88462896	88463096	-	1	NA	NA	NA	19401	NM_019666	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.005000	0.388060	
mm_23401.1	chr3	58031415	58031615	+	1	NA	NA	NA	132292	NR_040538	67850	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	0.005000	0.527363	
mm_146250.1	chr18	77778676	77778876	+	1	NA	NA	NA	5008	NM_007505	11946	Mm.276137	NM_007505	ENSMUSG00000025428	Atp5a1	AI035633|AL022851|AL023067|Atpm|D18Ertd206e|Mom2	ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	protein-coding	0.045000	0.527363	-54(ATTTTTATAGGG,+,0.00)
mm_59133.1	chr7	23385792	23385992	+	1	NA	NA	NA	3	NM_011860	23968	Mm.333653	NM_011860	ENSMUSG00000015721	Nlrp5	Mater|Nalp5|Op1|PAN11	NLR family, pyrin domain containing 5	protein-coding	0.030000	0.502488	
mm_62355.1	chr7	100499137	100499337	+	1	NA	NA	NA	5879	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.015000	0.527363	
mm_99625.1	chr11	104685642	104685842	+	1	NA	NA	NA	77742	NM_016780	16416	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding	0.065000	0.656716	-71(GCCCTTATGAGG,-,0.00)
mm_23862.1	chr3	83012745	83012945	+	1	NA	NA	NA	5121	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.055000	0.557214	
mm_158868.1	chrY	1245566	1245766	-	1	NA	NA	NA	93	NM_001326683	22290	Mm.20477	NM_009484	ENSMUSG00000068457	Uty	Hydb|mKIAA4057	ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	protein-coding	0.050000	0.462687	
mm_112724.1	chr13	19192160	19192360	+	1	NA	NA	NA	203553	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.432836	
mm_96850.1	chr11	70044502	70044702	+	1	NA	NA	NA	-9522	NM_001291131	11889	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.035000	0.562189	
mm_9688.1	chr1	178336055	178336255	-	1	NA	NA	NA	1629	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.050000	0.437811	-33(GCTTTAAGGCGG,+,0.00)
mm_160869.1	chr11	66525961	66526161	-	1	NA	NA	NA	65	NM_001034874	380702	Mm.351764	NM_001034874	ENSMUSG00000053930	Shisa6	Gm879|ckamp52	shisa family member 6	protein-coding	0.180000	0.840796	
mm_134025.1	chr16	4997707	4997907	-	1	NA	NA	NA	45	NM_027669	71089	Mm.87382	NM_027669	ENSMUSG00000022542	Sept12	1700028G04Rik|4933413B09Rik|Septin12	septin 12	protein-coding	0.005000	0.616915	
mm_106429.1	chr11	119347854	119348054	-	1	NA	NA	NA	7556	NM_018822	27029	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	0.005000	0.567164	
mm_123829.1	chr14	70626984	70627184	-	1	NA	NA	NA	-19	NM_001252663	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.065000	0.696517	
mm_44542.1	chr5	24540892	24541092	-	1	NA	NA	NA	-14	NM_001310476	117590	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	0.015000	0.562189	
mm_14129.1	chr2	126034573	126034773	+	1	NA	NA	NA	15	NM_008008	14178	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0.030000	0.417910	
mm_39809.1	chr5	30647827	30648027	+	1	NA	NA	NA	-9	NR_049199	100885838		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.060000	0.651741	
mm_130197.1	chr15	94587958	94588158	-	1	NA	NA	NA	1766	NM_008971	19230	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0.010000	0.447761	-34(CCTTTTAAACTG,+,0.00)
mm_94499.1	chr11	7159957	7160157	+	1	NA	NA	NA	28512	NR_045101	100041347	Mm.300962	NR_045101	ENSMUSG00000087512	Gm11985	OTTMUSG00000005133	predicted gene 11985	ncRNA	0.015000	0.462687	
mm_50904.1	chr6	57581529	57581729	+	1	NA	NA	NA	637	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.015000	0.402985	23(CGGCATTAAAGC,-,0.00)
mm_151881.1	chr19	5798427	5798627	-	1	NA	NA	NA	-2546	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.005000	0.308458	
mm_80461.1	chr9	77983691	77983891	+	1	NA	NA	NA	66426	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.005000	0.383085	28(CCTTTTAAAATG,+,0.00)
mm_76733.1	chr8	95037026	95037226	-	1	NA	NA	NA	-17977	NM_001042715	330830	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.005000	0.497512	
mm_157673.1	chrX	59134612	59134812	-	1	NA	NA	NA	-276	NM_010200	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding	0.085000	0.666667	
mm_144869.1	chr18	36734945	36735145	+	1	NA	NA	NA	-25	NM_028036	71983	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	0.075000	0.587065	
mm_30029.1	chr3	135689162	135689362	-	1	NA	NA	NA	2285	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.015000	0.477612	-35(GCCCCTTAAAAG,-,0.00),-34(CCCCTTAAAAGT,-,0.00),-33(CCCTTAAAAGTA,+,0.00)
mm_58392.1	chr7	3206868	3207068	+	1	NA	NA	NA	-11658	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.005000	0.492537	
mm_86659.1	chr10	17772638	17772838	+	1	NA	NA	NA	-23481	NM_138628	378431	Mm.283493	NM_138628	ENSMUSG00000039891	Txlnb	2310001N14Rik|Mdp77	taxilin beta	protein-coding	0.015000	0.472637	
mm_64794.1	chr7	6678148	6678348	-	1	NA	NA	NA	-15880	NR_131759	76637	Mm.159751	NR_131759	ENSMUSG00000108113	Zim2	1700116N21Rik	zinc finger, imprinted 2	ncRNA	0.015000	0.398010	
mm_115914.1	chr13	23465776	23465976	-	1	NA	NA	NA	25	NM_013483	12231	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0.020000	0.542289	-94(ATGTTTAAAAGG,-,0.00)
mm_15897.1	chr2	164951056	164951256	+	1	NA	NA	NA	2937	NM_013599	17395	Mm.4406	NM_013599	ENSMUSG00000017737	Mmp9	AW743869|B/MMP9|Clg4b|Gel B|MMP-9|pro-MMP-9	matrix metallopeptidase 9	protein-coding	0.055000	0.572139	
mm_72880.1	chr8	88950165	88950365	+	1	NA	NA	NA	-74470	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.005000	0.547264	
mm_139518.1	chr17	56593854	56594054	+	1	NA	NA	NA	8972	NM_001163300	224903	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	0.005000	0.542289	
mm_13235.1	chr2	98662159	98662359	+	1	NA	NA	NA	1194602	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.025000	0.388060	
mm_117273.1	chr13	65052720	65052920	-	1	NA	NA	NA	19762	NM_001083890	238683	Mm.295543	NM_001083890	ENSMUSG00000074849	Spata31d1c	4932441B19Rik|Fam75d1c	spermatogenesis associated 31 subfamily D, member 1C	protein-coding	0.035000	0.636816	
mm_136791.1	chr17	11329515	11329715	+	1	NA	NA	NA	489256	NM_016694	50873	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.000000	0.437811	
mm_159351.1	chr3	73057048	73057248	-	1	NA	NA	NA	-205	NM_198864	386750	Mm.331076	NM_198864	ENSMUSG00000048304	Slitrk3	-	SLIT and NTRK-like family, member 3	protein-coding	0.015000	0.601990	
mm_36643.1	chr4	94331497	94331697	-	1	NA	NA	NA	225199	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.010000	0.427861	76(ACTTTAAAAGTC,+,0.00)
mm_60969.1	chr7	47772767	47772967	+	1	NA	NA	NA	-171495	NM_153067	233222	Mm.240142	NM_153067	ENSMUSG00000078698	Mrgpra3	Mrga3	MAS-related GPR, member A3	protein-coding	0.000000	0.383085	
mm_79331.1	chr9	53340970	53341170	+	1	NA	NA	NA	39400	NM_176846	320051	Mm.277540	NM_176846	ENSMUSG00000034584	Exph5	AC079869.22gm5|B130009M24Rik|E030050P12|Kiaa0624|Slac2b|slac2-b	exophilin 5	protein-coding	0.040000	0.532338	
mm_166840.1	chr7	19310385	19310585	+	1	NA	NA	NA	-440	NM_001347586	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.080000	0.676617	
mm_53161.1	chr6	125321247	125321447	+	1	NA	NA	NA	7	NM_011324	20276	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0.045000	0.666667	
mm_89417.1	chr10	90837722	90837922	+	1	NA	NA	NA	7979	NM_001347053	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.010000	0.417910	
mm_22992.1	chr3	34019809	34020009	+	1	NA	NA	NA	-170	NM_001113189	14359	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0.180000	0.810945	
mm_85597.1	chr9	107517237	107517437	-	1	NA	NA	NA	-16608	NM_019704	56395	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	0.045000	0.606965	
mm_55027.1	chr6	48902896	48903096	-	1	NA	NA	NA	-1990	NM_001161622	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.025000	0.477612	
mm_87021.1	chr10	28074822	28075022	+	1	NA	NA	NA	102	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0.130000	0.701493	
mm_106249.1	chr11	117813647	117813847	-	1	NA	NA	NA	4080	NM_009304	20973	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0.025000	0.542289	
mm_166882.1	chr7	25801132	25801332	+	1	NA	NA	NA	-12499	NM_001190975	26362	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.015000	0.517413	-91(AGCTTTTAAAAG,-,0.00),-90(GCTTTTAAAAGG,+,0.00),-90(GCTTTTAAAAGG,-,0.00),-89(CTTTTAAAAGGA,+,0.00)
mm_91673.1	chr10	43221263	43221463	-	1	NA	NA	NA	-123	NM_027772	71365	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding	0.065000	0.636816	
mm_14568.1	chr2	135193346	135193546	+	1	NA	NA	NA	22170	NR_040517	78805	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA	0.005000	0.283582	
mm_71427.1	chr8	46492274	46492474	+	1	NA	NA	NA	1408	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.015000	0.497512	
mm_61933.1	chr7	90166081	90166281	+	1	NA	NA	NA	35949	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.452736	
mm_89644.1	chr10	96690493	96690693	+	1	NA	NA	NA	73592	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.015000	0.477612	
mm_133024.1	chr16	57121674	57121874	+	1	NA	NA	NA	60	NM_138599	28185	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70 homolog A (yeast)	protein-coding	0.140000	0.726368	
mm_19992.1	chr2	118715373	118715573	-	1	NA	NA	NA	-11510	NM_001081971	383787	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	0.020000	0.562189	
mm_161287.1	chr14	26067264	26067464	-	1	NA	NA	NA	45	NM_001270495	100039257	Mm.33344	NM_001270495	ENSMUSG00000021867	Tmem254b	ENSMUSG00000021867|Gm9746	transmembrane protein 254b	protein-coding	0.050000	0.527363	
mm_168236.1	chr10	81704687	81704887	+	1	NA	NA	NA	-38	NM_001243067	73610	Mm.490466	NM_001243067	ENSMUSG00000096795	Zfp433	1700123A16Rik	zinc finger protein 433	protein-coding	0.045000	0.606965	
mm_139654.1	chr17	57402440	57402640	+	1	NA	NA	NA	43854	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.462687	
mm_140236.1	chr17	84119343	84119543	+	1	NA	NA	NA	40783	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.015000	0.567164	
mm_118510.1	chr14	14013452	14013652	+	1	NA	NA	NA	1061	NM_139227	246103	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0.055000	0.597015	
mm_41697.1	chr5	100845778	100845978	+	1	NA	NA	NA	-351	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|Gpat3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding	0.060000	0.552239	
mm_9911.1	chr1	188978316	188978516	-	1	NA	NA	NA	29424	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.005000	0.343284	
mm_45569.1	chr5	73284067	73284267	-	1	NA	NA	NA	17	NR_040689	72276	Mm.271215	NR_040687	ENSMUSG00000100175	1700025M24Rik	-	RIKEN cDNA 1700025M24 gene	ncRNA	0.000000	0.482587	
mm_148988.1	chr19	8594051	8594251	+	1	NA	NA	NA	969	NM_001164635	19879	Mm.285294	NM_031194	ENSMUSG00000063796	Slc22a8	Oat3|Roct	solute carrier family 22 (organic anion transporter), member 8	protein-coding	0.040000	0.601990	
mm_131816.1	chr16	22920248	22920448	+	1	NA	NA	NA	126	NM_001083904	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.030000	0.487562	
mm_170449.1	chr18	83707566	83707766	+	1	NA	NA	NA	378896	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.030000	0.482587	
mm_17822.1	chr2	33887274	33887474	-	1	NA	NA	NA	572	NM_175184	72543	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.160000	0.800995	
mm_35019.1	chr4	3875136	3875336	-	1	NA	NA	NA	-3131	NM_020021	17451	Mm.459300	NM_020021	ENSMUSG00000078365	Mos	c-mos	Moloney sarcoma oncogene	protein-coding	0.100000	0.621891	58(GCCTTTTTAAAA,-,0.00)
mm_157382.1	chrX	37945565	37945765	-	1	NA	NA	NA	-43895	NM_023894	104384	Mm.156958	NM_023894	ENSMUSG00000068048	Rhox9	1600026O01Rik|Gpbox|Psx2	reproductive homeobox 9	protein-coding	0.050000	0.497512	
mm_169555.1	chr15	103411797	103411997	+	1	NA	NA	NA	18530	NM_028797	74174	Mm.325325	NM_028797	ENSMUSG00000022487	Gtsf1	1700006H03Rik|Cue110	gametocyte specific factor 1	protein-coding	0.060000	0.656716	
mm_152269.1	chr19	8818592	8818792	-	1	NA	NA	NA	602	NM_027412	70387	Mm.261082	NM_027412	ENSMUSG00000071660	Ttc9c	2210019E14Rik|6330408J23Rik	tetratricopeptide repeat domain 9C	protein-coding	0.035000	0.452736	
mm_38830.1	chr4	149137512	149137712	-	1	NA	NA	NA	-12	NM_027263	69928	Mm.260893	NM_027263	ENSMUSG00000073705	Apitd1	2610040C18Rik|2810407L01Rik|CENP-S	apoptosis-inducing, TAF9-like domain 1	protein-coding	0.130000	0.676617	
mm_58055.1	chr6	136857455	136857655	-	1	NA	NA	NA	45	NM_026639	109978	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	0.040000	0.532338	
mm_20986.1	chr2	152105277	152105477	-	1	NA	NA	NA	-147	NM_029688	76650	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.070000	0.606965	
mm_154263.1	chr19	60769918	60770118	-	1	NA	NA	NA	4367	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.025000	0.378109	
mm_115966.1	chr13	23934118	23934318	-	1	NA	NA	NA	-62	NM_175663	319177	Mm.377879	NM_175663	ENSMUSG00000050799	Hist1h2ba	Th2b	histone cluster 1, H2ba	protein-coding	0.035000	0.487562	-35(GCCTATAAATAC,-,0.00)
mm_113649.1	chr13	42301729	42301929	+	1	NA	NA	NA	353	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.040000	0.422886	
mm_154261.1	chr19	60769847	60770047	-	1	NA	NA	NA	4438	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.025000	0.437811	
mm_146252.1	chr18	77779995	77780195	+	1	NA	NA	NA	6327	NM_007505	11946	Mm.276137	NM_007505	ENSMUSG00000025428	Atp5a1	AI035633|AL022851|AL023067|Atpm|D18Ertd206e|Mom2	ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	protein-coding	0.035000	0.507463	
mm_43917.1	chr5	144767861	144768061	+	1	NA	NA	NA	-831	NM_001081362	100683	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0.050000	0.592040	57(TGATTTAAAAGG,-,0.00)
mm_23471.1	chr3	60480446	60480646	+	1	NA	NA	NA	7716	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.010000	0.482587	
mm_7547.1	chr1	124507620	124507820	-	1	NA	NA	NA	-462161	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.437811	
mm_111967.1	chr12	109675833	109676033	-	1	NA	NA	NA	-6264	NR_030540	100124461		NR_030540	ENSMUSG00000077881	Mir882	Mirn882|mmu-mir-882	microRNA 882	ncRNA	0.000000	0.462687	-87(GCTTTTATATGG,+,0.00)
mm_44068.1	chr5	148552285	148552485	+	1	NA	NA	NA	403	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.135000	0.671642	
mm_158462.1	chrX	140600411	140600611	-	1	NA	NA	NA	11	NM_001077364	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.075000	0.626866	
mm_67566.1	chr7	81933743	81933943	-	1	NA	NA	NA	616	NM_013886	29877	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfrp3	2700022B06Rik|HRP-3	hepatoma-derived growth factor, related protein 3	protein-coding	0.160000	0.776119	
mm_20926.1	chr2	150855613	150855813	-	1	NA	NA	NA	49018	NM_024465	76192	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.005000	0.373134	
mm_79173.1	chr9	47852529	47852729	+	1	NA	NA	NA	-34421	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.010000	0.308458	
mm_29256.1	chr3	107219672	107219872	-	1	NA	NA	NA	1960	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.532338	
mm_102912.1	chr11	69579151	69579351	-	1	NA	NA	NA	73	NM_144824	216853	Mm.31586	NM_144824	ENSMUSG00000041346	Wrap53	BC021790|Wdr79	WD repeat containing, antisense to Trp53	protein-coding	0.095000	0.611940	
mm_84123.1	chr9	58581982	58582182	-	1	NA	NA	NA	-158	NM_001293673	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.070000	0.606965	
mm_80274.1	chr9	72985447	72985647	+	1	NA	NA	NA	43	NM_028181	72278	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	0.120000	0.646766	
mm_163170.1	chr11	87662622	87662822	+	1	NA	NA	NA	-365	NM_172448	207742	Mm.440230	NM_172448	ENSMUSG00000034177	Rnf43	4732452J19Rik	ring finger protein 43	protein-coding	0.015000	0.507463	
mm_121461.1	chr14	120506152	120506352	+	1	NA	NA	NA	27791	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.005000	0.442786	26(TTCTTTAAAAGC,-,0.00),27(TCTTTAAAAGCC,+,0.00)
mm_136214.1	chr16	89948404	89948604	-	1	NA	NA	NA	12323	NM_009384	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.005000	0.398010	
mm_24697.1	chr3	95124358	95124558	+	1	NA	NA	NA	-56	NM_016712	50874	Mm.71935	NM_016712	ENSMUSG00000005628	Tmod4	MTMOD|Sk-Tmod	tropomodulin 4	protein-coding	0.015000	0.557214	
mm_80893.1	chr9	99629462	99629662	+	1	NA	NA	NA	-16	NM_001311142	72507	Mm.221455	NM_028258	ENSMUSG00000037784	Dzip1l	2610524A10Rik|AI663976	DAZ interacting protein 1-like	protein-coding	0.050000	0.651741	
mm_102356.1	chr11	58239606	58239806	-	1	NA	NA	NA	24729	NM_019440	54396	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	0.050000	0.631841	
mm_103754.1	chr11	80779911	80780111	-	1	NA	NA	NA	14	NM_177390	338367	Mm.151948	NM_177390	ENSMUSG00000035441	Myo1d	9930104H07Rik|AW544947|D11Ertd9e|myosin-1d	myosin ID	protein-coding	0.150000	0.815920	
mm_92811.1	chr10	81404886	81405086	-	1	NA	NA	NA	11311	NR_106141	102465778		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.050000	0.631841	
mm_136012.1	chr16	75909152	75909352	-	1	NA	NA	NA	14	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.010000	0.502488	
mm_56268.1	chr6	90988587	90988787	-	1	NA	NA	NA	128139	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.120000	0.726368	
mm_92634.1	chr10	80329354	80329554	-	1	NA	NA	NA	19	NM_008793	18551	Mm.299916	NM_008793	ENSMUSG00000020131	Pcsk4	AI647044|L21221|NEC 3|NEC3|PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding	0.040000	0.656716	
mm_97966.1	chr11	83753606	83753806	+	1	NA	NA	NA	69	NM_145432	217026	Mm.117874	NM_145432	ENSMUSG00000000976	Heatr6	2700008B19Rik|BB135312|BB249351	HEAT repeat containing 6	protein-coding	0.080000	0.621891	
mm_95046.1	chr11	32286863	32287063	+	1	NA	NA	NA	-1	NM_001033981	544763	Mm.450958	NM_001033981	ENSMUSG00000073063	Hbq1b	F830116E18Rik|Hbqt1	hemoglobin, theta 1B	protein-coding	0.040000	0.587065	
mm_159841.1	chr5	135009070	135009270	+	1	NA	NA	NA	18	NM_001190437	68758	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.065000	0.606965	
mm_116705.1	chr13	50991232	50991432	-	1	NA	NA	NA	109395	NR_029463	77428	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0.040000	0.572139	
mm_64818.1	chr7	7298321	7298521	-	1	NA	NA	NA	415	NM_001302387	12727	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2	chloride channel, voltage-sensitive 4	protein-coding	0.110000	0.726368	
mm_135536.1	chr16	49770711	49770911	-	1	NA	NA	NA	71517	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.015000	0.442786	
mm_75718.1	chr8	69019747	69019947	-	1	NA	NA	NA	-68889	NM_007509	11966	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0.005000	0.492537	-61(GGTTAGAAAAGG,-,0.00)
mm_172706.1	chr8	65710731	65710931	-	1	NA	NA	NA	92306	NM_175188	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.055000	0.651741	
mm_13730.1	chr2	117965994	117966194	+	1	NA	NA	NA	144166	NR_040631	73938	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0.005000	0.417910	
mm_125764.1	chr15	74516313	74516513	+	1	NA	NA	NA	217	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0.165000	0.815920	
mm_118880.1	chr14	25869526	25869726	+	1	NA	NA	NA	27471	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.015000	0.557214	
mm_133214.1	chr16	75855621	75855821	+	1	NA	NA	NA	53545	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.020000	0.353234	
mm_155842.1	chrX	101254062	101254262	+	1	NA	NA	NA	-366	NM_018789	54601	Mm.240299	NM_018789	ENSMUSG00000042903	Foxo4	Afxh|Mllt7|afx	forkhead box O4	protein-coding	0.070000	0.621891	
mm_114629.1	chr13	76130182	76130382	+	1	NA	NA	NA	31548	NM_001081352	218343	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	mKIAA0372	tetratricopeptide repeat domain 37	protein-coding	0.010000	0.412935	
mm_3079.1	chr1	134325448	134325648	+	1	NA	NA	NA	7380	NM_001144855	68507	Mm.295105	NM_001144855	ENSMUSG00000026458	Ppfia4	100042382|1110008G13Rik|AI448359|AI852265|C81506|Gm3812	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	protein-coding	0.030000	0.492537	
mm_65657.1	chr7	28137429	28137629	-	1	NA	NA	NA	8063	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.035000	0.552239	
mm_115321.1	chr13	112427651	112427851	+	1	NA	NA	NA	-36319	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.025000	0.487562	
mm_151453.1	chr19	57804574	57804774	+	1	NA	NA	NA	193640	NM_181415	226255	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0.015000	0.368159	
mm_33918.1	chr4	136495499	136495699	+	1	NA	NA	NA	25838	NM_024452	269593	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	0.010000	0.437811	
mm_46815.1	chr5	113138065	113138265	-	1	NA	NA	NA	420	NM_001347397	243219	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.060000	0.601990	
mm_21937.1	chr2	167059962	167060162	-	1	NA	NA	NA	-2872	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.030000	0.527363	
mm_126880.1	chr15	89453630	89453830	+	1	NA	NA	NA	-181	NM_021921	60597	Mm.173337	NM_021921	ENSMUSG00000022619	Mapk8ip2	3230402N03Rik|AI847694|AW049958|IB2|Jip2|R75148	mitogen-activated protein kinase 8 interacting protein 2	protein-coding	0.070000	0.631841	
mm_73512.1	chr8	107368684	107368884	+	1	NA	NA	NA	34421	NM_008706	18104	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	0.000000	0.507463	
mm_100831.1	chr11	5444701	5444901	-	1	NA	NA	NA	46	NM_001080924	407821	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0.160000	0.766169	
mm_97268.1	chr11	75765194	75765394	+	1	NA	NA	NA	-30515	NR_136933	102641247	Mm.411386	NR_136932		Gm12339	OTTMUSG00000006218	predicted gene 12339	ncRNA	0.020000	0.497512	
mm_111565.1	chr12	101718315	101718515	-	1	NA	NA	NA	108	NM_001082976	74413	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	0.125000	0.756219	
mm_29011.1	chr3	101604572	101604772	-	1	NA	NA	NA	35	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.115000	0.701493	
mm_119890.1	chr14	54936407	54936607	+	1	NA	NA	NA	10	NM_029390	67272	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	0.005000	0.601990	
mm_32558.1	chr4	109475740	109475940	+	1	NA	NA	NA	665	NM_013876	29864	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0.030000	0.502488	
mm_40391.1	chr5	52782975	52783175	+	1	NA	NA	NA	20	NM_030185	78796	Mm.266886	NM_030185	ENSMUSG00000029179	Zcchc4	4930449I23Rik	zinc finger, CCHC domain containing 4	protein-coding	0.115000	0.691542	
mm_153959.1	chr19	47691993	47692193	-	1	NA	NA	NA	-51	NM_001290825	12821	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	0.025000	0.452736	-92(GTCTATAAATGG,-,0.00),-45(CCGTCTATAAAG,-,0.00)
mm_9715.1	chr1	179803104	179803304	-	1	NA	NA	NA	811	NM_026375	226747	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.175000	0.776119	
mm_137043.1	chr17	17909368	17909568	+	1	NA	NA	NA	21644	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.015000	0.412935	
mm_116035.1	chr13	26770000	26770200	-	1	NA	NA	NA	65	NM_008232	15192	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	hepatoma derived growth factor-like 1	protein-coding	0.060000	0.616915	
mm_165032.1	chr19	34248594	34248794	-	1	NA	NA	NA	6679	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.015000	0.437811	
mm_113738.1	chr13	44592604	44592804	+	1	NA	NA	NA	-138070	NM_021878	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.020000	0.497512	-29(CAGCATAAATGG,-,0.00),-27(GCATAAATGGGC,+,0.00)
mm_83937.1	chr9	56636271	56636471	-	1	NA	NA	NA	-723	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.040000	0.626866	
mm_44929.1	chr5	36152843	36153043	-	1	NA	NA	NA	-51078	NM_175249	76943	Mm.44242	NM_175249	ENSMUSG00000043430	Psapl1	2310020A21Rik	prosaposin-like 1	protein-coding	0.005000	0.512438	32(GCTTTTATAAGG,+,0.00),32(GCTTTTATAAGG,-,0.00)
mm_104135.1	chr11	86867553	86867753	-	1	NA	NA	NA	-59993	NM_026191	67487	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.005000	0.547264	
mm_57798.1	chr6	129284382	129284582	-	1	NA	NA	NA	-9113	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.015000	0.472637	-33(CTTCATATAAGG,-,0.00)
mm_2753.1	chr1	128787465	128787665	+	1	NA	NA	NA	-195266	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.005000	0.442786	
mm_167093.1	chr7	107665273	107665473	+	1	NA	NA	NA	58529	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.010000	0.492537	
mm_11455.1	chr2	32162294	32162494	+	1	NA	NA	NA	11246	NM_001159634	227723	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0.010000	0.577114	
mm_122943.1	chr14	54965348	54965548	-	1	NA	NA	NA	1159	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.040000	0.557214	
mm_19873.1	chr2	114048097	114048297	-	1	NA	NA	NA	4678	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.020000	0.487562	
mm_166976.1	chr7	45103133	45103333	-	1	NA	NA	NA	589	NM_010189	14132	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0.015000	0.457711	
mm_71814.1	chr8	68884343	68884543	+	1	NA	NA	NA	3888	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.363184	
mm_79496.1	chr9	57096659	57096859	+	1	NA	NA	NA	20383	NM_011378	20466	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	0.005000	0.477612	
mm_121947.1	chr14	24176594	24176794	-	1	NA	NA	NA	69226	NM_001163513	71228	Mm.68971	NM_027726	ENSMUSG00000021782	Dlg5	4933429D20Rik|T25557|mKIAA0583	discs, large homolog 5 (Drosophila)	protein-coding	0.030000	0.616915	
mm_171390.1	chr4	122141597	122141797	+	1	NA	NA	NA	-519572	NM_001099309	666927	Mm.465133	NM_001099309	ENSMUSG00000078575	Gm12887	OTTMUSG00000008910	predicted gene 12887	protein-coding	0.020000	0.522388	-30(TCCTATATAAGC,-,0.00)
mm_122628.1	chr14	51145633	51145833	-	1	NA	NA	NA	1034	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.025000	0.547264	
mm_136590.1	chr17	4995831	4996031	+	1	NA	NA	NA	857	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.130000	0.796020	
mm_19234.1	chr2	84711923	84712123	-	1	NA	NA	NA	3141	NM_144887	228136	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0.000000	0.298507	7(CCCTTAATAGAT,+,0.00)
mm_42944.1	chr5	122990664	122990864	+	1	NA	NA	NA	1410	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.030000	0.457711	
mm_154754.1	chrX	10717345	10717545	+	1	NA	NA	NA	80	NM_001166635	68041	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	0.065000	0.681592	
mm_57708.1	chr6	128583768	128583968	-	1	NA	NA	NA	-2262	NM_001001179	232400	Mm.259234	NM_001001179	ENSMUSG00000047228	BC048546	Ovos	cDNA sequence BC048546	protein-coding	0.020000	0.422886	-33(GAGTATAAAGGC,-,0.00)
mm_153247.1	chr19	36264082	36264282	-	1	NA	NA	NA	-114885	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.010000	0.462687	
mm_99171.1	chr11	100846173	100846373	+	1	NA	NA	NA	4312	NM_001113563	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.010000	0.417910	-88(CCATTTAAAAGA,-,0.00)
mm_82610.1	chr9	21615771	21615971	-	1	NA	NA	NA	-298	NM_011417	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.040000	0.597015	
mm_39040.1	chr4	152332322	152332522	-	1	NA	NA	NA	-6229	NM_029216	269610	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding	0.035000	0.447761	
mm_5272.1	chr1	18223476	18223676	-	1	NA	NA	NA	-12	NR_002879	654454	Mm.383637	NR_002879	ENSMUSG00000070977	Defb44-ps	Defb44|Defb49|Defb49-ps|EG574082	defensin beta 44, pseudogene	pseudo	0.000000	0.407960	-32(TCATATAAAGAC,+,0.00)
mm_110454.1	chr12	51673505	51673705	-	1	NA	NA	NA	-17361	NM_001329699	11782	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0.015000	0.497512	
mm_147626.1	chr18	58168258	58168458	-	1	NA	NA	NA	41568	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.010000	0.393035	11(CATTTTAAAGAC,+,0.00)
mm_15426.1	chr2	157086920	157087120	+	1	NA	NA	NA	-35	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.020000	0.587065	
mm_72898.1	chr8	90876261	90876461	+	1	NA	NA	NA	47526	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.020000	0.532338	
mm_23450.1	chr3	60031663	60031863	+	1	NA	NA	NA	-25	NM_023383	67758	Mm.24547	NM_023383	ENSMUSG00000027761	Aadac	5033417E09Rik|AI265437|Aada	arylacetamide deacetylase (esterase)	protein-coding	0.010000	0.383085	-92(GCTTTAAGAGAT,+,0.00)
mm_59882.1	chr7	30291907	30292107	+	1	NA	NA	NA	254	NM_001081114	76686	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	0.050000	0.666667	
mm_92132.1	chr10	65908143	65908343	-	1	NA	NA	NA	215821	NR_038039	69433	Mm.23366	NR_038039	ENSMUSG00000100000	1700023F02Rik	AV205046	RIKEN cDNA 1700023F02 gene	ncRNA	0.000000	0.407960	
mm_34216.1	chr4	140971780	140971980	+	1	NA	NA	NA	10609	NM_023374	67680	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.035000	0.587065	
mm_133526.1	chr16	90924740	90924940	+	1	NA	NA	NA	10009	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.025000	0.577114	
mm_10062.1	chr1	193370174	193370374	-	1	NA	NA	NA	8	NM_144817	215303	Mm.40329	NM_144817	ENSMUSG00000016179	Camk1g	CLICK-III|CaMKIgamma	calcium/calmodulin-dependent protein kinase I gamma	protein-coding	0.000000	0.497512	-69(TCCCCTTTAAGG,-,0.00),-68(CCCCTTTAAGGC,-,0.00),-67(CCCTTTAAGGCT,+,0.00),-66(CCTTTAAGGCTG,+,0.00)
mm_106658.1	chr11	121228971	121229171	-	1	NA	NA	NA	-131	NM_001254735	217370	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	0.050000	0.572139	
mm_150269.1	chr19	34232546	34232746	+	1	NA	NA	NA	22727	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.015000	0.462687	
mm_146227.1	chr18	77070640	77070840	+	1	NA	NA	NA	5060	NM_001164168	17344	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0.000000	0.398010	
mm_167828.1	chr9	124423512	124423712	-	1	NA	NA	NA	-175	NR_102721	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.080000	0.636816	
mm_155431.1	chrX	73493104	73493304	+	1	NA	NA	NA	9603	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.015000	0.537313	
mm_93123.1	chr10	91171468	91171668	-	1	NA	NA	NA	51	NM_001080132	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.110000	0.716418	
mm_119886.1	chr14	54924731	54924931	+	1	NA	NA	NA	1957	NM_010112	13644	Mm.236438	NM_010112	ENSMUSG00000022203	Efs	-	embryonal Fyn-associated substrate	protein-coding	0.010000	0.537313	-23(CCTCTTAGGGGC,+,0.00)
mm_33136.1	chr4	125052664	125052864	+	1	NA	NA	NA	12893	NM_175223	75563	Mm.50304	NM_175223	ENSMUSG00000042707	Dnali1	1700023A09Rik|AW049135	dynein, axonemal, light intermediate polypeptide 1	protein-coding	0.025000	0.517413	
mm_100729.1	chr11	3931494	3931694	-	1	NA	NA	NA	367	NM_001130459	21452	Mm.20948	NM_015749	ENSMUSG00000020432	Tcn2	AW208754|Tcn-2	transcobalamin 2	protein-coding	0.010000	0.507463	
mm_100441.1	chr11	119486340	119486540	+	1	NA	NA	NA	-4907	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.005000	0.388060	
mm_137636.1	chr17	28330395	28330595	+	1	NA	NA	NA	2024	NM_011287	19896	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.010000	0.358209	
mm_134507.1	chr16	19063495	19063695	-	1	NA	NA	NA	186845	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.000000	0.452736	
mm_83680.1	chr9	50447810	50448010	-	1	NA	NA	NA	-46615	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.000000	0.368159	63(ACCTATTTAAGA,-,0.00)
mm_130380.1	chr15	97844824	97845024	-	1	NA	NA	NA	-422	NM_001204278	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.015000	0.611940	
mm_158893.1	chr1	21349543	21349743	+	1	NA	NA	NA	-34	NM_183322	368204	Mm.26006	NM_183322	ENSMUSG00000067750	Khdc1a	AU014713|C88118|Ndg1	KH domain containing 1A	protein-coding	0.005000	0.557214	
mm_154176.1	chr19	58734847	58735047	-	1	NA	NA	NA	6060	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.020000	0.507463	
mm_120854.1	chr14	75224043	75224243	+	1	NA	NA	NA	-18144	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.015000	0.402985	
mm_10807.1	chr2	24349783	24349983	+	1	NA	NA	NA	4512	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.000000	0.462687	
mm_95561.1	chr11	52339668	52339868	+	1	NA	NA	NA	-21094	NM_011694	22333	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.030000	0.592040	
mm_148567.1	chr19	4811750	4811950	+	1	NA	NA	NA	-216	NM_019869	56275	Mm.276338	NM_019869	ENSMUSG00000006456	Rbm14	1300007E16Rik|PSP2|Sytip|p16|p16K	RNA binding motif protein 14	protein-coding	0.085000	0.661692	
mm_154023.1	chr19	53390453	53390653	-	1	NA	NA	NA	20	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	0.125000	0.676617	
mm_157220.1	chrX	13218538	13218738	-	1	NA	NA	NA	17645	NR_045430	72122	Mm.75434	NR_045429	ENSMUSG00000100714	2010308F09Rik	-	RIKEN cDNA 2010308F09 gene	ncRNA	0.040000	0.442786	
mm_95474.1	chr11	50810491	50810691	+	1	NA	NA	NA	17140	NM_013922	30944	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding	0.005000	0.393035	
mm_57873.1	chr6	129876568	129876768	-	1	NA	NA	NA	4	NM_133203	170733	Mm.155514	NM_133203	ENSMUSG00000014543	Klra17	Ly49q|Ly49q1	killer cell lectin-like receptor, subfamily A, member 17	protein-coding	0.005000	0.417910	
mm_125688.1	chr15	66804081	66804281	+	1	NA	NA	NA	27648	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.015000	0.467662	
mm_106900.1	chr12	8012728	8012928	+	1	NA	NA	NA	35151	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.000000	0.417910	
mm_116625.1	chr13	48922109	48922309	-	1	NA	NA	NA	45619	NM_001033268	218236	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0.015000	0.457711	
mm_73159.1	chr8	94995626	94995826	+	1	NA	NA	NA	11327	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.010000	0.512438	
mm_67052.1	chr7	67338436	67338636	-	1	NA	NA	NA	34322	NM_001291192	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.035000	0.393035	
mm_124485.1	chr14	121698361	121698561	-	1	NA	NA	NA	-44	NM_001081039	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.020000	0.577114	
mm_58718.1	chr7	13023261	13023461	+	1	NA	NA	NA	-791	NM_011588	21849	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	0.065000	0.636816	
mm_149468.1	chr19	11591981	11592181	+	1	NA	NA	NA	12723	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.005000	0.462687	
mm_51245.1	chr6	71707770	71707970	+	1	NA	NA	NA	189	NM_178608	52250	Mm.146332	NM_178608	ENSMUSG00000052852	Reep1	D6Ertd253e	receptor accessory protein 1	protein-coding	0.160000	0.810945	
mm_19536.1	chr2	94437968	94438168	-	1	NA	NA	NA	118	NM_007466	11800	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0.140000	0.701493	
mm_14028.1	chr2	122152657	122152857	+	1	NA	NA	NA	5070	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.005000	0.263682	
mm_160567.1	chr9	56685329	56685529	-	1	NA	NA	NA	-176	NM_181074	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.005000	0.547264	
mm_58318.1	chr6	146445508	146445708	-	1	NA	NA	NA	56615	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.005000	0.432836	
mm_2793.1	chr1	130851339	130851539	+	1	NA	NA	NA	-14338	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.005000	0.427861	
mm_141464.1	chr17	30576374	30576574	-	1	NA	NA	NA	-187	NM_027060	224671	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0.090000	0.686567	
mm_21778.1	chr2	164847765	164847965	-	1	NA	NA	NA	9843	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.005000	0.462687	
mm_163656.1	chr13	73699411	73699611	+	1	NA	NA	NA	-315	NM_027780	71390	Mm.105251	NM_027780		Slc6a19os	5430425J12Rik	solute carrier family 6 (neurotransmitter transporter), member 19, opposite strand	protein-coding	0.005000	0.537313	
mm_124509.1	chr14	121915735	121915935	-	1	NA	NA	NA	-61	NM_182806	110168	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	0.025000	0.507463	
mm_75347.1	chr8	43320456	43320656	-	1	NA	NA	NA	-13547	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.030000	0.512438	
mm_46112.1	chr5	92361209	92361409	-	1	NA	NA	NA	1968	NM_019494	56066	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0.045000	0.502488	
mm_58835.1	chr7	16816230	16816430	+	1	NA	NA	NA	402	NM_173430	243853	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	0.175000	0.796020	
mm_109198.1	chr12	108636146	108636346	+	1	NA	NA	NA	493	NM_001163396	14026	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.015000	0.507463	
mm_16731.1	chr2	9175671	9175871	-	1	NA	NA	NA	-13744	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.005000	0.353234	
mm_166075.1	chr4	136140665	136140865	+	1	NA	NA	NA	-3057	NM_008321	15903	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.030000	0.502488	
mm_101898.1	chr11	49186964	49187164	-	1	NA	NA	NA	25	NM_172793	237754	Mm.130787	NM_172793	ENSMUSG00000040283	Btnl9	B430208I01|Btn3|D330012D11Rik	butyrophilin-like 9	protein-coding	0.015000	0.507463	9(CCCCTTTAGAGG,-,0.00),10(CCCTTTAGAGGG,+,0.00)
mm_132372.1	chr16	34883337	34883537	+	1	NA	NA	NA	55892	NR_040536	76649	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.005000	0.398010	
mm_13676.1	chr2	116878577	116878777	+	1	NA	NA	NA	-14	NM_026104	67356	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	0.015000	0.497512	
mm_99108.1	chr11	100133589	100133789	+	1	NA	NA	NA	2260	NM_008469	16665	Mm.440010	NM_008469	ENSMUSG00000054146	Krt15	AI528832|K15|Krt1-15	keratin 15	protein-coding	0.025000	0.562189	
mm_34615.1	chr4	150372065	150372265	+	1	NA	NA	NA	90249	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.095000	0.726368	
mm_151988.1	chr19	5846667	5846867	-	1	NA	NA	NA	-1287	NR_003513	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.025000	0.557214	
mm_23420.1	chr3	58576630	58576830	+	1	NA	NA	NA	72	NM_001040396	69227	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	0.095000	0.666667	
mm_85741.1	chr9	108567190	108567390	-	1	NA	NA	NA	52	NM_023247	66706	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	0.040000	0.606965	
mm_123251.1	chr14	61037868	61038068	-	1	NA	NA	NA	19	NM_001164155	29820	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.095000	0.716418	
mm_71795.1	chr8	67685375	67685575	+	1	NA	NA	NA	132820	NM_027626	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.005000	0.517413	9(CACCATAAAAGT,-,0.00)
mm_102859.1	chr11	69399333	69399533	-	1	NA	NA	NA	-1199	NM_025915	67020	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.110000	0.577114	
mm_114527.1	chr13	73498337	73498537	+	1	NA	NA	NA	31054	NM_145376	210992	Mm.284649	NM_145376	ENSMUSG00000021608	Lpcat1	2900035H07Rik|Aytl2|BB137372|BC005662|C87117|LPCAT|rd11	lysophosphatidylcholine acyltransferase 1	protein-coding	0.005000	0.447761	
mm_157430.1	chrX	38566494	38566694	-	1	NA	NA	NA	9602	NM_028288	72584	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	0.015000	0.467662	
mm_47798.1	chr5	132499756	132499956	-	1	NA	NA	NA	42487	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.005000	0.328358	
mm_99091.1	chr11	99785095	99785295	+	1	NA	NA	NA	-5	NM_001085548	665998	Mm.425699	NM_001085548	ENSMUSG00000078262	Krtap4-9	OTTMUSG00000002198	keratin associated protein 4-9	protein-coding	0.000000	0.472637	-35(GGGTATAAAAGG,-,0.00)
mm_62740.1	chr7	111028892	111029092	+	1	NA	NA	NA	41	NM_009431	22083	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0.095000	0.676617	
mm_30947.1	chr4	33077330	33077530	+	1	NA	NA	NA	14318	NM_008076	14409	Mm.6227	NM_008076	ENSMUSG00000023267	Gabrr2	-	gamma-aminobutyric acid (GABA) C receptor, subunit rho 2	protein-coding	0.025000	0.582090	
mm_31450.1	chr4	48610398	48610598	+	1	NA	NA	NA	25305	NM_021436	230157	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0.020000	0.447761	
mm_120382.1	chr14	64589621	64589821	+	1	NA	NA	NA	-936	NR_029813	387233		NR_029813	ENSMUSG00000065597	Mir124a-1	Mirn124a|Mirn124a-1	microRNA 124a-1	ncRNA	0.020000	0.492537	
mm_116048.1	chr13	27342824	27343024	-	1	NA	NA	NA	-2749	NM_010088	13529	Mm.291450	NM_010088	ENSMUSG00000018259	Prl8a2	D/tPRP|DPRP|Dtprp|Ghd11|mdPRP	prolactin family 8, subfamily a, member 2	protein-coding	0.010000	0.477612	-34(CATTTTAGAGCC,+,0.00)
mm_147552.1	chr18	54956619	54956819	-	1	NA	NA	NA	33461	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.005000	0.492537	
mm_160035.1	chr6	132700948	132701148	-	1	NA	NA	NA	-41	NM_207024	387349	Mm.377911	NM_207024	ENSMUSG00000071150	Tas2r121	T2R21|Tas2r13|Tas2r21|mGR21|mT2r48	taste receptor, type 2, member 121	protein-coding	0.005000	0.363184	
mm_3772.1	chr1	156455189	156455389	+	1	NA	NA	NA	19039	NM_009230	20652	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0.000000	0.487562	
mm_58819.1	chr7	16452848	16453048	+	1	NA	NA	NA	169	NM_026938	69094	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	0.085000	0.691542	
mm_163276.1	chr11	115730596	115730796	+	1	NA	NA	NA	-22099	NM_008163	14784	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.010000	0.522388	
mm_2921.1	chr1	132065663	132065863	+	1	NA	NA	NA	2299	NM_172510	213006	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4a	A230072B04|A930031D07Rik|AI850289|Mfsd4	major facilitator superfamily domain containing 4A	protein-coding	0.015000	0.482587	
mm_128581.1	chr15	58034182	58034382	-	1	NA	NA	NA	12	NM_029418	75758	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.125000	0.676617	
mm_144332.1	chr18	13451902	13452102	+	1	NA	NA	NA	445012	NM_153087	225192	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0.000000	0.383085	
mm_114200.1	chr13	55929231	55929431	+	1	NA	NA	NA	-97906	NM_011097	18740	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.015000	0.527363	
mm_94823.1	chr11	23269517	23269717	+	1	NA	NA	NA	13576	NM_134014	103573	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.000000	0.288557	
mm_10617.1	chr2	19344739	19344939	+	1	NA	NA	NA	522	NR_126563	108871	Mm.107666	NR_126563		4930447M23Rik	-	RIKEN cDNA 4930447M23 gene	ncRNA	0.035000	0.502488	
mm_64564.1	chr7	144861287	144861487	+	1	NA	NA	NA	1	NM_010202	14175	Mm.4956	NM_010202	ENSMUSG00000050917	Fgf4	Fgf-4|Fgfk|HBGF-4|Hst1|Hstf-1|KS3|hst|hst-1|kFGF	fibroblast growth factor 4	protein-coding	0.125000	0.701493	-34(GGCTATATATAC,-,0.00)
mm_102693.1	chr11	65745766	65745966	-	1	NA	NA	NA	-11034	NR_030417	791070		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	0.015000	0.442786	
mm_92744.1	chr10	80998027	80998227	-	1	NA	NA	NA	3238	NM_001038655	14708	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.035000	0.572139	
mm_34029.1	chr4	138075076	138075276	+	1	NA	NA	NA	63342	NR_126429	73563	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	0.010000	0.457711	
mm_25900.1	chr3	131111180	131111380	+	1	NA	NA	NA	983	NM_001276402	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.110000	0.711443	
mm_40466.1	chr5	53651383	53651583	+	1	NA	NA	NA	47105	NR_024201	19866		NR_024201	ENSMUSG00000089083	Rnu7	-	U7 small nuclear RNA	snRNA	0.015000	0.393035	
mm_62797.1	chr7	112755588	112755788	+	1	NA	NA	NA	-3696	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.010000	0.393035	
mm_105042.1	chr11	100609971	100610171	-	1	NA	NA	NA	10097	NM_019795	56354	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0.005000	0.457711	
mm_17932.1	chr2	35504235	35504435	-	1	NA	NA	NA	-42886	NM_001145821	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.015000	0.542289	
mm_115154.1	chr13	106283050	106283250	+	1	NA	NA	NA	653765	NM_029665	76582	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.015000	0.412935	
mm_166124.1	chr4	153081955	153082155	+	1	NA	NA	NA	384515	NR_033138	330004	Mm.291863	NM_001033414		Gm833	-	predicted gene 833	ncRNA	0.010000	0.472637	
mm_54074.1	chr6	14755041	14755241	-	1	NA	NA	NA	133	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	0.030000	0.497512	
mm_91270.1	chr10	24294563	24294763	-	1	NA	NA	NA	71146	NM_021509	59012	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	0.010000	0.517413	
mm_26382.1	chr3	142568413	142568613	+	1	NA	NA	NA	8017	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.005000	0.427861	
mm_114379.1	chr13	63239932	63240132	+	1	NA	NA	NA	3	NR_110521	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.110000	0.726368	-73(CCTTTAAGGCAG,+,0.00)
mm_97464.1	chr11	78262688	78262888	+	1	NA	NA	NA	1034	NM_001002004	72503	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0.030000	0.527363	
mm_127339.1	chr15	100598891	100599091	+	1	NA	NA	NA	993	NM_001304965	19009	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0.025000	0.522388	-54(GGGTATATATGC,-,0.00)
mm_48350.1	chr5	139325663	139325863	-	1	NA	NA	NA	-299	NM_172723	231821	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.030000	0.542289	
mm_113788.1	chr13	45730333	45730533	+	1	NA	NA	NA	222989	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.030000	0.522388	
mm_74918.1	chr8	25547982	25548182	-	1	NA	NA	NA	8001	NR_110510	102633315	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	OTTMUSG00000031030	predicted gene 16159	ncRNA	0.000000	0.467662	89(GTCTTTAAAGTC,+,0.00)
mm_46673.1	chr5	109016832	109017032	-	1	NA	NA	NA	-10496	NM_009491	22307	Mm.261598	NM_009491	ENSMUSG00000067010	Vmn2r10	V2r16|VR16	vomeronasal 2, receptor 10	protein-coding	0.035000	0.592040	
mm_119423.1	chr14	45350968	45351168	+	1	NA	NA	NA	-118	NM_019637	56291	Mm.202561	NM_019637	ENSMUSG00000053205	Styx	0610039A20Rik|hStyxb	serine/threonine/tyrosine interaction protein	protein-coding	0.130000	0.756219	
mm_42671.1	chr5	119671557	119671757	+	1	NA	NA	NA	424	NM_011535	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.050000	0.557214	
mm_167995.1	chrX	170011336	170011536	+	1	NA	NA	NA	-32519	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.020000	0.378109	
mm_128117.1	chr15	28066570	28066770	-	1	NA	NA	NA	-40822	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.010000	0.492537	
mm_157548.1	chrX	51681157	51681357	-	1	NA	NA	NA	345	NM_001077202	50786	Mm.252561	NM_015819	ENSMUSG00000062184	Hs6st2	6OST2	heparan sulfate 6-O-sulfotransferase 2	protein-coding	0.110000	0.696517	
mm_146498.1	chr18	3281479	3281679	-	1	NA	NA	NA	168	NM_001110854	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.010000	0.283582	
mm_12221.1	chr2	67653893	67654093	+	1	NA	NA	NA	-21464	NR_106083	102465706		NR_106083	ENSMUSG00000098299	Mir7224	Gm27971|mmu-mir-7224	microRNA 7224	ncRNA	0.000000	0.422886	
mm_138409.1	chr17	35067225	35067425	+	1	NA	NA	NA	0	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.010000	0.552239	
mm_5358.1	chr1	25759635	25759835	-	1	NA	NA	NA	69972	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.000000	0.393035	
mm_120286.1	chr14	63133312	63133512	+	1	NA	NA	NA	10950	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.020000	0.517413	
mm_127255.1	chr15	99702195	99702395	+	1	NA	NA	NA	8	NM_031842	83797	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.135000	0.776119	
mm_132955.1	chr16	49955756	49955956	+	1	NA	NA	NA	-24604	NR_045001	628951	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0.005000	0.482587	
mm_162523.1	chr1	157398137	157398337	-	1	NA	NA	NA	-14115	NR_027984	69953	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	0.000000	0.358209	
mm_92960.1	chr10	85917077	85917277	-	1	NA	NA	NA	-191	NM_001302886	72843	Mm.25307	NM_181650	ENSMUSG00000035529	Prdm4	1700031E19Rik|2810470D21Rik|AW552272|SC-1|SC1	PR domain containing 4	protein-coding	0.085000	0.626866	
mm_149520.1	chr19	12442687	12442887	+	1	NA	NA	NA	14882	NM_019540	56093	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.010000	0.497512	
mm_35277.1	chr4	19922507	19922707	-	1	NA	NA	NA	-41	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.015000	0.517413	
mm_46628.1	chr5	108448797	108448997	-	1	NA	NA	NA	-6	NM_172883	243197	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7	major facilitator superfamily domain containing 7A	protein-coding	0.060000	0.611940	
mm_135578.1	chr16	50432083	50432283	-	1	NA	NA	NA	206	NM_027444	70508	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.140000	0.736318	
mm_28289.1	chr3	89089762	89089962	-	1	NA	NA	NA	169	NM_001083808	72296	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.055000	0.562189	
mm_64668.1	chr7	4445472	4445672	-	1	NA	NA	NA	85	NM_175372	108841	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	0.085000	0.651741	
mm_57129.1	chr6	122602229	122602429	-	1	NA	NA	NA	115	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.040000	0.507463	-77(TTCTCTAAAAGC,-,0.00)
mm_79266.1	chr9	50753160	50753360	+	1	NA	NA	NA	289	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.035000	0.567164	-59(GCATATATAAGG,-,0.00)
mm_149590.1	chr19	16133215	16133415	+	1	NA	NA	NA	484	NM_008139	14682	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.130000	0.726368	
mm_35426.1	chr4	35225103	35225303	-	1	NA	NA	NA	677	NM_001081343	73205	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585	RIKEN cDNA 3110043O21 gene	protein-coding	0.015000	0.512438	-36(ACTTATTAAAGG,-,0.00)
mm_98256.1	chr11	88718373	88718573	+	1	NA	NA	NA	-170	NR_038058	193280	Mm.396842	NR_038058		C030037D09Rik	9330160M04	RIKEN cDNA C030037D09 gene	ncRNA	0.145000	0.746269	
mm_43048.1	chr5	124076025	124076225	+	1	NA	NA	NA	19673	NM_019875	56325	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.045000	0.587065	
mm_5404.1	chr1	33757646	33757846	-	1	NA	NA	NA	4	NM_145392	213539	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	0.145000	0.761194	
mm_10892.1	chr2	25263277	25263477	+	1	NA	NA	NA	779	NM_175286	97031	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0.105000	0.676617	
mm_162886.1	chr10	106723512	106723712	+	1	NA	NA	NA	-121132	NR_131026	75833	Mm.159596	NR_131026		4930532I03Rik	-	RIKEN cDNA 4930532I03 gene	ncRNA	0.010000	0.388060	
mm_15900.1	chr2	164960721	164960921	+	1	NA	NA	NA	-7167	NM_020333	57138	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	0.110000	0.721393	
mm_15860.1	chr2	164822921	164823121	+	1	NA	NA	NA	335	NM_028028	71971	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	0.085000	0.616915	
mm_151655.1	chr19	4124464	4124664	-	1	NA	NA	NA	1294	NM_016666	11632	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.010000	0.522388	
mm_70370.1	chr8	9977648	9977848	+	1	NA	NA	NA	31	NM_026868	68904	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	0.085000	0.636816	
mm_118079.1	chr13	103300851	103301051	-	1	NA	NA	NA	33541	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.005000	0.393035	
mm_78426.1	chr9	31280446	31280646	+	1	NA	NA	NA	9145	NM_001101597	638580	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.040000	0.552239	-14(CCTTTTATGCTG,+,0.00)
mm_8850.1	chr1	162709496	162709696	-	1	NA	NA	NA	30960	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.025000	0.442786	
mm_163621.1	chr13	55402841	55403041	+	1	NA	NA	NA	3293	NM_011392	20505	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	0.030000	0.601990	
mm_6410.1	chr1	72874299	72874499	-	1	NA	NA	NA	466	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.050000	0.547264	
mm_146469.1	chr18	87757595	87757795	+	1	NA	NA	NA	1045630	NM_172633	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.010000	0.402985	
mm_144123.1	chr18	4742957	4743157	+	1	NA	NA	NA	-69429	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA	0.025000	0.507463	
mm_80782.1	chr9	95815425	95815625	+	1	NA	NA	NA	29754	NM_001033210	102502	Mm.11869	NM_001033210	ENSMUSG00000049493	Pls1	AI427122	plastin 1 (I-isoform)	protein-coding	0.010000	0.422886	
mm_134.1	chr1	10059163	10059363	+	1	NA	NA	NA	21045	NM_026493	211660	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	0.015000	0.318408	
mm_42991.1	chr5	123343863	123344063	+	1	NA	NA	NA	-485	NM_029850	77045	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0.040000	0.492537	
mm_99502.1	chr11	103027753	103027953	+	1	NA	NA	NA	-709	NM_008707	18107	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.005000	0.422886	
mm_149367.1	chr19	11362181	11362381	+	1	NA	NA	NA	-13207	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.000000	0.432836	
mm_60135.1	chr7	37479791	37479991	+	1	NA	NA	NA	289861	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.030000	0.577114	
mm_30235.1	chr3	146107969	146108169	-	1	NA	NA	NA	-33	NM_172864	242253	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik	WD repeat domain 63	protein-coding	0.035000	0.462687	
mm_7996.1	chr1	134326878	134327078	-	1	NA	NA	NA	5950	NM_001144855	68507	Mm.295105	NM_001144855	ENSMUSG00000026458	Ppfia4	100042382|1110008G13Rik|AI448359|AI852265|C81506|Gm3812	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	protein-coding	0.025000	0.592040	
mm_120825.1	chr14	75151334	75151534	+	1	NA	NA	NA	15009	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.005000	0.482587	
mm_86813.1	chr10	20353145	20353345	+	1	NA	NA	NA	5426	NM_027930	71804	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0.020000	0.402985	
mm_132460.1	chr16	36160844	36161044	+	1	NA	NA	NA	4133	NM_173869	268885	Mm.187847	NM_173869	ENSMUSG00000059657	Stfa2l1	-	stefin A2 like 1	protein-coding	0.005000	0.398010	
mm_85490.1	chr9	106133482	106133682	-	1	NA	NA	NA	-20542	NR_029549	387153		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	0.015000	0.517413	-34(GGCTATAAAGAC,-,0.00)
mm_98627.1	chr11	96024449	96024649	+	1	NA	NA	NA	4	NM_008119	14607	Mm.248452	NM_008119	ENSMUSG00000014351	Gip	-	gastric inhibitory polypeptide	protein-coding	0.000000	0.517413	
mm_149875.1	chr19	25182304	25182504	+	1	NA	NA	NA	-54798	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.010000	0.373134	
mm_142413.1	chr17	45549562	45549762	-	1	NA	NA	NA	15	NM_001013749	210573	Mm.329064	NM_001013749	ENSMUSG00000096847	Tmem151b	Gm323	transmembrane protein 151B	protein-coding	0.095000	0.781095	
mm_151041.1	chr19	47023715	47023915	+	1	NA	NA	NA	-8626	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.030000	0.557214	
mm_43982.1	chr5	146261239	146261439	+	1	NA	NA	NA	29664	NM_153599	264064	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.080000	0.487562	
mm_52364.1	chr6	112696633	112696833	+	1	NA	NA	NA	-63	NM_001167730	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.120000	0.616915	
mm_56428.1	chr6	97311950	97312150	-	1	NA	NA	NA	-59270	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.040000	0.562189	
mm_162608.1	chr1	183296880	183297080	-	1	NA	NA	NA	28	NM_027861	71678	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	0.075000	0.636816	
mm_158767.1	chrX	166585520	166585720	-	1	NA	NA	NA	96	NM_019397	54156	Mm.37707	NM_019397	ENSMUSG00000000402	Egfl6	Maeg	EGF-like-domain, multiple 6	protein-coding	0.050000	0.646766	
mm_143971.1	chr17	87331932	87332132	-	1	NA	NA	NA	49146	NM_028639	225049	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.015000	0.522388	-96(TGCTATTTAAGG,-,0.00)
mm_23439.1	chr3	59431291	59431491	+	1	NA	NA	NA	-87135	NM_001162884	242050	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.045000	0.417910	
mm_62876.1	chr7	114753606	114753806	+	1	NA	NA	NA	7940	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	0.000000	0.527363	
mm_5111.1	chr1	6214456	6214656	-	1	NA	NA	NA	-106	NM_009826	12421	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	0.095000	0.681592	
mm_10188.1	chr2	4882182	4882382	+	1	NA	NA	NA	718	NM_175400	109079	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0.170000	0.796020	
mm_33078.1	chr4	123904880	123905080	+	1	NA	NA	NA	-33	NM_019660	56309	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	0.105000	0.701493	
mm_49354.1	chr6	21986883	21987083	+	1	NA	NA	NA	1073	NM_001081351	214642	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.030000	0.512438	
mm_21096.1	chr2	153231048	153231248	-	1	NA	NA	NA	-5707	NM_198617	241732	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.005000	0.512438	4(CCTTATATGACC,+,0.00)
mm_21213.1	chr2	155692260	155692460	-	1	NA	NA	NA	24	NM_019828	56407	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	0.110000	0.686567	
mm_87408.1	chr10	45807669	45807869	+	1	NA	NA	NA	65	NR_040624	320363	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	0.025000	0.507463	
mm_43011.1	chr5	123809542	123809742	+	1	NA	NA	NA	55874	NM_030701	80885	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0.015000	0.358209	
mm_81848.1	chr9	118560263	118560463	+	1	NA	NA	NA	-46346	NM_133721	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.020000	0.547264	
mm_21523.1	chr2	163634408	163634608	-	1	NA	NA	NA	-10342	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.005000	0.343284	
mm_151830.1	chr19	5663584	5663784	-	1	NA	NA	NA	23	NM_001164482	20469	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0.085000	0.706468	
mm_109390.1	chr12	109743688	109743888	+	1	NA	NA	NA	73	NR_029914	723863		NR_029914	ENSMUSG00000065497	Mir410	Mirn410|mmu-mir-410	microRNA 410	ncRNA	0.035000	0.512438	
mm_147235.1	chr18	38250483	38250683	-	1	NA	NA	NA	-18	NR_027904	73516	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0.035000	0.552239	-100(GTCTCTAAATGC,-,0.00),-52(CCTTTTAGGGCT,+,0.00)
mm_45166.1	chr5	51457651	51457851	-	1	NA	NA	NA	96170	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.020000	0.393035	
mm_156266.1	chrX	136831969	136832169	+	1	NA	NA	NA	9323	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.030000	0.567164	-69(TCCTTTATGGGG,+,0.00)
mm_122255.1	chr14	34152380	34152580	-	1	NA	NA	NA	-61	NM_008919	19065	Mm.57059	NM_008919	ENSMUSG00000048337	Npy4r	NYYR-D|Ppyr1|Y4	neuropeptide Y receptor Y4	protein-coding	0.045000	0.631841	
mm_148698.1	chr19	5741928	5742128	+	1	NA	NA	NA	1124	NM_008520	16998	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0.090000	0.711443	
mm_118203.1	chr13	108163985	108164185	-	1	NA	NA	NA	5347	NM_028042	71991	Mm.212208	NM_028042	ENSMUSG00000021694	Ercc8	2410022P04Rik|2810431L23Rik|4631412O06Rik|B130065P18Rik|Ckn1|Csa	excision repaiross-complementing rodent repair deficiency, complementation group 8	protein-coding	0.030000	0.537313	
mm_10780.1	chr2	24336757	24336957	+	1	NA	NA	NA	-3	NM_031167	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.005000	0.552239	48(TCCTTTATACAC,+,0.00)
mm_20872.1	chr2	148443525	148443725	-	1	NA	NA	NA	-90	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.030000	0.522388	
mm_157834.1	chrX	74274831	74275031	-	1	NA	NA	NA	-826	NR_106059	102466804		NR_106059	ENSMUSG00000099226	Mir7091	Gm27381|mmu-mir-7091	microRNA 7091	ncRNA	0.010000	0.412935	
mm_76626.1	chr8	91801454	91801654	-	1	NA	NA	NA	100	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.065000	0.641791	
mm_140767.1	chr17	17624545	17624745	-	1	NA	NA	NA	-156	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.105000	0.686567	
mm_147213.1	chr18	37954917	37955117	-	1	NA	NA	NA	-29	NM_010411	15183	Mm.20521	NM_010411	ENSMUSG00000024454	Hdac3	AW537363	histone deacetylase 3	protein-coding	0.085000	0.696517	
mm_4105.1	chr1	167598267	167598467	+	1	NA	NA	NA	5	NM_009107	20183	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0.085000	0.651741	
mm_146577.1	chr18	7345912	7346112	-	1	NA	NA	NA	-48111	NM_001081393	74934	Mm.107918	NM_001081393	ENSMUSG00000061802	Armc4	4930463I21Rik|b2b227.1Clo|b2b643Clo	armadillo repeat containing 4	protein-coding	0.015000	0.462687	
mm_16699.1	chr2	6895539	6895739	-	1	NA	NA	NA	-10643	NM_001160293	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.010000	0.487562	
mm_20371.1	chr2	128429062	128429262	-	1	NA	NA	NA	189	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.020000	0.487562	
mm_65546.1	chr7	27130328	27130528	-	1	NA	NA	NA	10473	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.030000	0.562189	
mm_53877.1	chr6	149566042	149566242	+	1	NA	NA	NA	157158	NM_009753	12121	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	bicaudal D homolog 1 (Drosophila)	protein-coding	0.035000	0.567164	
mm_131079.1	chr16	4734874	4735074	+	1	NA	NA	NA	-6639	NM_010443	15369	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.005000	0.358209	
mm_141659.1	chr17	33760232	33760432	-	1	NA	NA	NA	154	NM_008997	19326	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0.115000	0.661692	-28(GCCTTTAGACCG,+,0.00)
mm_79904.1	chr9	65400805	65401005	+	1	NA	NA	NA	2417	NM_001033158	70784	Mm.35827	NM_001033158	ENSMUSG00000041696	Rasl12	4631404I11Rik	RAS-like, family 12	protein-coding	0.010000	0.507463	
mm_73124.1	chr8	94780733	94780933	+	1	NA	NA	NA	8653	NM_009142	20312	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	0.035000	0.537313	
mm_139957.1	chr17	71551955	71552155	+	1	NA	NA	NA	-6	NM_001142631	70891	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	0.125000	0.721393	
mm_40967.1	chr5	76995778	76995978	+	1	NA	NA	NA	-8177	NM_206935	384185	Mm.451858	NM_206935	ENSMUSG00000063820	Arl9	1700110A09Rik	ADP-ribosylation factor-like 9	protein-coding	0.015000	0.417910	-67(GTCTCTAAAAGT,-,0.00)
mm_46397.1	chr5	104092376	104092576	-	1	NA	NA	NA	-14868	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.055000	0.572139	
mm_9941.1	chr1	190170727	190170927	-	1	NA	NA	NA	-147	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding	0.055000	0.601990	-37(CCTTTTATATAT,+,0.00)
mm_135734.1	chr16	55831391	55831591	-	1	NA	NA	NA	7150	NM_030612	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.000000	0.378109	
mm_37591.1	chr4	126533197	126533397	-	1	NA	NA	NA	161	NM_153177	76850	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	0.155000	0.776119	
mm_122364.1	chr14	39361063	39361263	-	1	NA	NA	NA	-111266	NR_131973	432842	Mm.352566	NR_131973		LOC432842	-	uncharacterized LOC432842	ncRNA	0.005000	0.298507	
mm_94409.1	chr11	5799195	5799395	+	1	NA	NA	NA	4501	NM_018870	56012	Mm.219627	NM_018870	ENSMUSG00000020475	Pgam2	-	phosphoglycerate mutase 2	protein-coding	0.025000	0.577114	
mm_42420.1	chr5	115326965	115327165	+	1	NA	NA	NA	-112	NM_025573	108014	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0.115000	0.671642	22(CCTTTAAGATCG,+,0.00),32(CGCTTTAAAAAT,-,0.00),33(GCTTTAAAAATC,+,0.00)
mm_57962.1	chr6	135254182	135254382	-	1	NA	NA	NA	54	NM_010352	14840	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	0.015000	0.572139	
mm_59445.1	chr7	27133226	27133426	+	1	NA	NA	NA	13371	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.035000	0.577114	
mm_21200.1	chr2	155499024	155499224	-	1	NA	NA	NA	15722	NM_144786	207182	Mm.41757	NM_144786	ENSMUSG00000027603	Ggt7	1110017C11Rik|6330563L03Rik|Ggtl3	gamma-glutamyltransferase 7	protein-coding	0.015000	0.557214	
mm_73980.1	chr8	120537359	120537559	+	1	NA	NA	NA	50	NM_001145896	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.095000	0.696517	
mm_11452.1	chr2	32095457	32095657	+	1	NA	NA	NA	-94	NM_145521	227721	Mm.257236	NM_145521	ENSMUSG00000051373	Plpp7	D830019K17Rik|NET39|Ppapdc3	phospholipid phosphatase 7 (inactive)	protein-coding	0.020000	0.552239	
mm_159467.1	chr4	8690982	8691182	+	1	NA	NA	NA	676	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.150000	0.736318	
mm_99114.1	chr11	100140806	100141006	+	1	NA	NA	NA	2793	NM_001313963	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.020000	0.567164	
mm_131821.1	chr16	22929048	22929248	+	1	NA	NA	NA	8926	NM_001083904	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.020000	0.606965	
mm_126532.1	chr15	82016981	82017181	+	1	NA	NA	NA	712	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.015000	0.422886	
mm_156701.1	chrX	159532611	159532811	+	1	NA	NA	NA	43	NM_001033472	382252	Mm.296254	NM_001033472	ENSMUSG00000044150	A830080D01Rik	2310067E24Rik|Gm1146	RIKEN cDNA A830080D01 gene	protein-coding	0.120000	0.731343	
mm_17473.1	chr2	28559786	28559986	-	1	NA	NA	NA	3517	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.010000	0.577114	
mm_168757.1	chr1	21166422	21166622	+	1	NA	NA	NA	-52053	NM_001290679	75712	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	0.065000	0.606965	
mm_109815.1	chr12	3427617	3427817	-	1	NA	NA	NA	860	NM_172421	75302	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2 (Drosophila)	protein-coding	0.045000	0.547264	
mm_128678.1	chr15	60819749	60819949	-	1	NA	NA	NA	-3116	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0.010000	0.373134	-75(GTTTTTATGGAA,+,0.00)
mm_84029.1	chr9	57764588	57764788	-	1	NA	NA	NA	1172	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.080000	0.651741	
mm_1702.1	chr1	75168572	75168772	+	1	NA	NA	NA	26	NM_001159906	68818	Mm.32646	NM_026846	ENSMUSG00000026197	Zfand2b	1110060O18Rik|C81256	zinc finger, AN1 type domain 2B	protein-coding	0.090000	0.691542	
mm_95576.1	chr11	52407078	52407278	+	1	NA	NA	NA	10750	NM_153117	213673	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.005000	0.373134	
mm_9762.1	chr1	180885476	180885676	-	1	NA	NA	NA	-7532	NM_177099	320202	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0.000000	0.621891	
mm_59400.1	chr7	26771685	26771885	+	1	NA	NA	NA	14643	NM_007814	13090	Mm.14098	NM_007814	ENSMUSG00000066704	Cyp2b19	CYPIIB19	cytochrome P450, family 2, subfamily b, polypeptide 19	protein-coding	0.010000	0.432836	-74(CCCTTTATAGAT,+,0.00),3(GTCTAGAAAAGC,-,0.00)
mm_771.1	chr1	44147845	44148045	+	1	NA	NA	NA	201	NM_011729	22592	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	0.110000	0.646766	
mm_150195.1	chr19	32712299	32712499	+	1	NA	NA	NA	-101	NM_026487	67979	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.105000	0.671642	
mm_101806.1	chr11	46326781	46326981	-	1	NA	NA	NA	-14022	NM_001252459	76884	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0.030000	0.592040	
mm_70601.1	chr8	13339559	13339759	+	1	NA	NA	NA	855	NM_009361	21781	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	0.025000	0.358209	
mm_89143.1	chr10	85871812	85872012	+	1	NA	NA	NA	81	NM_133993	103136	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	0.105000	0.671642	
mm_169333.1	chr14	119278204	119278404	+	1	NA	NA	NA	140039	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.040000	0.542289	
mm_45528.1	chr5	72647575	72647775	-	1	NA	NA	NA	-121	NM_001081205	70701	Mm.38884	NM_001081205	ENSMUSG00000067219	Nipal1	3830408G10Rik|Npal1	NIPA-like domain containing 1	protein-coding	0.050000	0.616915	
mm_157786.1	chrX	73824474	73824674	-	1	NA	NA	NA	395	NM_001029868	245469	Mm.103782	NM_001029868	ENSMUSG00000002006	Pdzd4	B230341P03|D130075J17Rik|Kiaa1444-hp|LU1|PDZRN4L|Pdzk4|Pdzrnk4l|Xlu	PDZ domain containing 4	protein-coding	0.090000	0.726368	
mm_76301.1	chr8	84249574	84249774	-	1	NA	NA	NA	87	NM_001007571	101966	Mm.200723	NM_001007571	ENSMUSG00000019362	D8Ertd738e	AA589584	DNA segment, Chr 8, ERATO Doi 738, expressed	protein-coding	0.095000	0.626866	
mm_97628.1	chr11	78959558	78959758	+	1	NA	NA	NA	25266	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.020000	0.542289	
mm_12930.1	chr2	85047957	85048157	+	1	NA	NA	NA	-2403	NM_001081260	228140	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	0.115000	0.711443	
mm_3598.1	chr1	151571059	151571259	+	1	NA	NA	NA	-214	NM_022018	63913	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.020000	0.577114	
mm_73748.1	chr8	114651980	114652180	+	1	NA	NA	NA	212428	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.025000	0.492537	
mm_102899.1	chr11	69423874	69424074	-	1	NA	NA	NA	-10299	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.020000	0.447761	-82(GGGTCTAAAGGC,-,0.00)
mm_132859.1	chr16	48310347	48310547	+	1	NA	NA	NA	173	NM_028615	73703	Mm.27857	NM_028615	ENSMUSG00000072419	Dppa2	2410088E07Rik|C80932|D19Mgi18|ECAT15-2	developmental pluripotency associated 2	protein-coding	0.025000	0.467662	
mm_31721.1	chr4	62668790	62668990	+	1	NA	NA	NA	-5084	NM_001310706	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.025000	0.611940	
mm_144012.1	chr17	88441735	88441935	-	1	NA	NA	NA	1123	NM_180974	14236	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.050000	0.522388	-22(GCTTTAAAGCAG,+,0.00)
mm_127509.1	chr15	101676438	101676638	+	1	NA	NA	NA	3751	NM_010669	16688	Mm.441891	NM_010669	ENSMUSG00000023041	Krt6b	BB144589|Krt2-6b|mK6[b]	keratin 6B	protein-coding	0.020000	0.582090	
mm_145756.1	chr18	64887683	64887883	+	1	NA	NA	NA	27	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.165000	0.825871	
mm_18770.1	chr2	73486312	73486512	-	1	NA	NA	NA	-659	NM_001289723	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.025000	0.522388	
mm_42588.1	chr5	117356760	117356960	+	1	NA	NA	NA	-445	NM_021539	59043	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	0.050000	0.661692	
mm_19079.1	chr2	77817575	77817775	-	1	NA	NA	NA	-859	NM_178723	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.030000	0.477612	
mm_128322.1	chr15	38022142	38022342	-	1	NA	NA	NA	56612	NM_001112721	70790	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.005000	0.363184	
mm_116406.1	chr13	41425075	41425275	-	1	NA	NA	NA	62185	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.000000	0.482587	
mm_23876.1	chr3	83030191	83030391	+	1	NA	NA	NA	4138	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.025000	0.502488	
mm_140291.1	chr17	85613359	85613559	+	1	NA	NA	NA	4937	NR_038084	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.050000	0.611940	
mm_152020.1	chr19	6015700	6015900	-	1	NA	NA	NA	25	NM_001110504	12333	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	0.060000	0.681592	
mm_141962.1	chr17	35120969	35121169	-	1	NA	NA	NA	223	NM_001303476	13001	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	0.100000	0.711443	
mm_49892.1	chr6	38918857	38919057	+	1	NA	NA	NA	-29	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.000000	0.417910	13(CTCTTTATAAAG,-,0.00),15(CTTTATAAAGAA,+,0.00)
mm_5808.1	chr1	52233120	52233320	-	1	NA	NA	NA	12	NM_001081081	14660	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.110000	0.726368	
mm_41887.1	chr5	105495365	105495565	+	1	NA	NA	NA	-24006	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.040000	0.517413	45(CACCTTAAAAGA,-,0.00)
mm_101062.1	chr11	9048402	9048602	-	1	NA	NA	NA	-90	NM_001037928	626870	Mm.369429	NM_001037928	ENSMUSG00000040978	Gm11992	OTTMUSG00000005148	predicted gene 11992	protein-coding	0.070000	0.636816	
mm_14554.1	chr2	133552177	133552377	+	1	NA	NA	NA	118	NM_007553	12156	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.160000	0.771144	-84(CTCCTTTAAAAG,-,0.00),-83(TCCTTTAAAAGC,-,0.00),-82(CCTTTAAAAGCC,+,0.00)
mm_85878.1	chr9	110990237	110990437	-	1	NA	NA	NA	-624	NM_153100	235636	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	0.010000	0.517413	-31(CCTTAAATAGAG,+,0.00)
mm_18368.1	chr2	59882448	59882648	-	1	NA	NA	NA	58	NM_001159636	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.085000	0.716418	
mm_100281.1	chr11	117797615	117797815	+	1	NA	NA	NA	55	NM_029964	77727	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	-	RIKEN cDNA 6030468B19 gene	protein-coding	0.015000	0.601990	
mm_97471.1	chr11	78301522	78301722	+	1	NA	NA	NA	31	NM_017407	54141	Mm.24250	NM_017407	ENSMUSG00000002055	Spag5	AI874642|D11Bhm180e|Deepest|MAP126|Mastrin|S17	sperm associated antigen 5	protein-coding	0.090000	0.567164	
mm_127965.1	chr15	11995906	11996106	-	1	NA	NA	NA	1	NM_011294	20024	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.105000	0.701493	
mm_39324.1	chr5	8567002	8567202	+	1	NA	NA	NA	55850	NM_001347311	242819	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0.015000	0.427861	
mm_118221.1	chr13	110394763	110394963	-	1	NA	NA	NA	-181	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.100000	0.701493	
mm_163929.1	chr14	47307823	47308023	+	1	NA	NA	NA	9609	NM_178684	218975	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	0.010000	0.502488	
mm_93341.1	chr10	99759524	99759724	-	1	NA	NA	NA	34	NM_027945	71832	Mm.483162	NM_027945	ENSMUSG00000046934	Csl	1700007H16Rik	citrate synthase like	protein-coding	0.040000	0.487562	
mm_33472.1	chr4	130818521	130818721	+	1	NA	NA	NA	26084	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.035000	0.616915	
mm_102967.1	chr11	69665971	69666171	-	1	NA	NA	NA	99	NM_001291058	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.010000	0.522388	
mm_67404.1	chr7	80014874	80015074	-	1	NA	NA	NA	-9840	NM_001145999	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.025000	0.567164	
mm_75474.1	chr8	48554789	48554989	-	1	NA	NA	NA	119801	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.030000	0.447761	
mm_506.1	chr1	37153764	37153964	+	1	NA	NA	NA	-64414	NM_001282010	12790	Mm.214224	NM_009918	ENSMUSG00000026114	Cnga3	CNG3	cyclic nucleotide gated channel alpha 3	protein-coding	0.010000	0.462687	
mm_13186.1	chr2	93187465	93187665	+	1	NA	NA	NA	-19	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.090000	0.761194	
mm_21054.1	chr2	152627235	152627435	-	1	NA	NA	NA	327	NM_009047	19700	Mm.8752	NM_009047	ENSMUSG00000000359	Rem1	E030011C07Rik|Ras|Rem	rad and gem related GTP binding protein 1	protein-coding	0.065000	0.621891	
mm_82079.1	chr9	122999353	122999553	+	1	NA	NA	NA	-21873	NM_025339	66079	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	0.010000	0.432836	
mm_71443.1	chr8	46513255	46513455	+	1	NA	NA	NA	22389	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.030000	0.462687	
mm_83150.1	chr9	40456110	40456310	-	1	NA	NA	NA	-446	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.030000	0.572139	
mm_15857.1	chr2	164804996	164805196	+	1	NA	NA	NA	-18	NM_178375	67538	Mm.33184	NM_178375	ENSMUSG00000045822	Zswim3	4921517A06Rik|C86566	zinc finger SWIM-type containing 3	protein-coding	0.050000	0.552239	
mm_93590.1	chr10	117063683	117063883	-	1	NA	NA	NA	31	NM_007636	12461	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.130000	0.691542	
mm_11041.1	chr2	27025716	27025916	+	1	NA	NA	NA	2182	NM_172659	227659	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.005000	0.527363	
mm_49233.1	chr6	17205931	17206131	+	1	NA	NA	NA	7924	NR_102304	319682	Mm.136046	NR_102304	ENSMUSG00000085171	D830026I12Rik	-	RIKEN cDNA D830026I12 gene	ncRNA	0.000000	0.517413	
mm_64884.1	chr7	15917285	15917485	-	1	NA	NA	NA	4986	NM_009156	20364	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0.020000	0.582090	
mm_2485.1	chr1	105989692	105989892	+	1	NA	NA	NA	-614	NM_001122676	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.045000	0.567164	
mm_145287.1	chr18	53245493	53245693	+	1	NA	NA	NA	-69	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.155000	0.810945	
mm_55347.1	chr6	56796636	56796836	-	1	NA	NA	NA	1077	NM_145958	210973	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0.020000	0.398010	
mm_114075.1	chr13	54382730	54382930	+	1	NA	NA	NA	11481	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.000000	0.412935	
mm_45412.1	chr5	66337536	66337736	-	1	NA	NA	NA	29	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.065000	0.666667	
mm_50353.1	chr6	48593841	48594041	+	1	NA	NA	NA	58	NM_001079904	58887	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	0.100000	0.721393	
mm_111307.1	chr12	85759357	85759557	-	1	NA	NA	NA	12918	NM_145447	217721	Mm.301076	NM_145447	ENSMUSG00000034258	Mfsd7c	CCT|Flvcr2	major facilitator superfamily domain containing 7C	protein-coding	0.000000	0.467662	
mm_68017.1	chr7	100958316	100958516	-	1	NA	NA	NA	5950	NM_183168	233571	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.000000	0.422886	
mm_37811.1	chr4	130934458	130934658	-	1	NA	NA	NA	-9827	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.010000	0.592040	
mm_38122.1	chr4	134552061	134552261	-	1	NA	NA	NA	5	NM_029100	74777	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	0.130000	0.805970	
mm_46297.1	chr5	100429397	100429597	-	1	NA	NA	NA	38	NR_034038	100503199	Mm.392282	NR_034038	ENSMUSG00000097772	5430416N02Rik	100041797|Adapt33|Gm3514	RIKEN cDNA 5430416N02 gene	ncRNA	0.085000	0.592040	-54(GCGCCTTTAAGG,-,0.00),-53(CGCCTTTAAGGG,-,0.00),-52(GCCTTTAAGGGC,+,0.00),-52(GCCTTTAAGGGC,-,0.00),-51(CCTTTAAGGGCC,+,0.00)
mm_39268.1	chr5	3596250	3596450	+	1	NA	NA	NA	197	NM_172991	269623	Mm.38014	NM_172991	ENSMUSG00000040302	Rbm48	AW548102|C030048B08Rik	RNA binding motif protein 48	protein-coding	0.105000	0.671642	
mm_103298.1	chr11	72502318	72502518	-	1	NA	NA	NA	-12498	NM_153060	216892	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0.020000	0.532338	
mm_133728.1	chr16	93780863	93781063	+	1	NA	NA	NA	-51158	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.025000	0.467662	76(GGCTTTAAAAGA,-,0.00),77(GCTTTAAAAGAC,+,0.00)
mm_79505.1	chr9	57428039	57428239	+	1	NA	NA	NA	11975	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.010000	0.522388	-18(TGGTTTTAAAGA,-,0.00)
mm_118907.1	chr14	26656010	26656210	+	1	NA	NA	NA	13498	NR_106132	102465773		NR_106132	ENSMUSG00000098751	Mir7672	Gm27314|mmu-mir-7672	microRNA 7672	ncRNA	0.005000	0.333333	-49(GGTTATTAAAGG,-,0.00)
mm_150710.1	chr19	42591426	42591626	+	1	NA	NA	NA	21280	NM_001164311	67573	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	0.015000	0.477612	
mm_154928.1	chrX	32305011	32305211	+	1	NA	NA	NA	26717	NM_001168334	100040482	Mm.479861	NM_001168334	ENSMUSG00000096194	Btbd35f2	Gm2799	BTB domain containing 35, family member 2	protein-coding	0.010000	0.532338	
mm_107524.1	chr12	40465561	40465761	+	1	NA	NA	NA	19608	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.005000	0.398010	43(CTCTTTAAAAAA,-,0.00)
mm_17554.1	chr2	30124365	30124565	-	1	NA	NA	NA	146	NM_178694	227693	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	0.115000	0.751244	
mm_29932.1	chr3	131504806	131505006	-	1	NA	NA	NA	-59862	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.030000	0.502488	
mm_120130.1	chr14	60197189	60197389	+	1	NA	NA	NA	31626	NR_030458	751526		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA	0.030000	0.532338	
mm_63401.1	chr7	127297293	127297493	+	1	NA	NA	NA	1133	NM_001253874	16408	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.005000	0.572139	
mm_149204.1	chr19	9980491	9980691	+	1	NA	NA	NA	-9	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.005000	0.402985	
mm_33284.1	chr4	128751973	128752173	+	1	NA	NA	NA	-7185	NM_001009819	215493	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	0.015000	0.592040	
mm_1071.1	chr1	59315181	59315381	+	1	NA	NA	NA	58374	NM_001033373	271697	Mm.297713	NM_001033373	ENSMUSG00000026023	Cdk15	Als2cr7|Pftk2	cyclin-dependent kinase 15	protein-coding	0.010000	0.502488	
mm_93985.1	chr10	127370456	127370656	-	1	NA	NA	NA	-8	NM_010565	16325	Mm.2594	NM_010565	ENSMUSG00000025405	Inhbc	-	inhibin beta-C	protein-coding	0.015000	0.502488	
mm_70619.1	chr8	13507089	13507289	+	1	NA	NA	NA	-12654	NM_019521	14456	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0.000000	0.462687	
mm_94370.1	chr11	5098821	5099021	+	1	NA	NA	NA	167	NM_001283062	14030	Mm.142822	NM_007968	ENSMUSG00000009079	Ewsr1	Ews|Ewsh	Ewing sarcoma breakpoint region 1	protein-coding	0.105000	0.706468	
mm_172976.1	chr9	94538611	94538811	+	1	NA	NA	NA	-630	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0.095000	0.731343	-33(GGCCTTATATGG,-,0.00),-31(CCTTATATGGTG,+,0.00)
mm_68383.1	chr7	109438712	109438912	-	1	NA	NA	NA	241	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	0.075000	0.661692	
mm_132210.1	chr16	32611677	32611877	+	1	NA	NA	NA	2881	NM_011638	22042	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0.000000	0.427861	
mm_143408.1	chr17	70827629	70827829	-	1	NA	NA	NA	19048	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.020000	0.447761	
mm_36724.1	chr4	98999878	99000078	-	1	NA	NA	NA	-30976	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.005000	0.328358	
mm_52619.1	chr6	117173905	117174105	+	1	NA	NA	NA	5470	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.025000	0.552239	
mm_153790.1	chr19	45878061	45878261	-	1	NA	NA	NA	-62098	NM_145703	80906	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	0.030000	0.407960	
mm_164063.1	chr14	117527528	117527728	+	1	NA	NA	NA	426219	NR_105747	102465148		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0.005000	0.388060	
mm_125998.1	chr15	76457355	76457555	+	1	NA	NA	NA	17	NM_198885	20289	Mm.322821	NM_198885	ENSMUSG00000034161	Scx	BB114693|Bhlha41|Scl	scleraxis	protein-coding	0.085000	0.706468	-77(GGCCAGAAAGGG,-,0.00),-33(TGCTATAAAGGC,-,0.00)
mm_15318.1	chr2	155679722	155679922	+	1	NA	NA	NA	12562	NM_019828	56407	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	0.005000	0.452736	
mm_49046.1	chr6	4902864	4903064	+	1	NA	NA	NA	-356	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.060000	0.666667	
mm_84218.1	chr9	61920324	61920524	-	1	NA	NA	NA	-5914	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.005000	0.393035	
mm_94350.1	chr11	4895241	4895441	+	1	NA	NA	NA	-2	NM_172438	107829	Mm.28969	NM_172438	ENSMUSG00000034274	Thoc5	1700060C24Rik|A430085L24Rik|Fmip|PK1.3|Sgk2	THO complex 5	protein-coding	0.065000	0.631841	
mm_99525.1	chr11	103170694	103170894	+	1	NA	NA	NA	-344	NM_001077698	57778	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.125000	0.766169	
mm_59191.1	chr7	24481884	24482084	+	1	NA	NA	NA	-39	NM_153112	260299	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	0.145000	0.791045	
mm_132620.1	chr16	38784131	38784331	+	1	NA	NA	NA	15972	NM_178924	22268	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0.025000	0.527363	
mm_152771.1	chr19	21053595	21053795	-	1	NA	NA	NA	-51015	NR_126458	75354	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.015000	0.432836	
mm_66502.1	chr7	45083588	45083788	-	1	NA	NA	NA	8525	NM_026555	52377	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0.040000	0.646766	
mm_83996.1	chr9	57449084	57449284	-	1	NA	NA	NA	-9070	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.015000	0.482587	
mm_50972.1	chr6	61180257	61180457	+	1	NA	NA	NA	32	NM_183310	232035	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding	0.200000	0.855721	
mm_4120.1	chr1	169655401	169655601	+	1	NA	NA	NA	0	NM_001313705	19737	Mm.20954	NM_009063	ENSMUSG00000026678	Rgs5	1110070A02Rik	regulator of G-protein signaling 5	protein-coding	0.030000	0.527363	
mm_63154.1	chr7	123418142	123418342	+	1	NA	NA	NA	40260	NM_025304	30949	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0.010000	0.442786	
mm_92611.1	chr10	80137068	80137268	-	1	NA	NA	NA	219	NM_001195268	100503659	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.045000	0.616915	
mm_43893.1	chr5	144100292	144100492	+	1	NA	NA	NA	-44	NM_001081109	231876	Mm.288726	NM_001081109	ENSMUSG00000038970	Lmtk2	2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk	lemur tyrosine kinase 2	protein-coding	0.125000	0.721393	
mm_34226.1	chr4	141010585	141010785	+	1	NA	NA	NA	48	NM_008546	17150	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0.100000	0.716418	
mm_71003.1	chr8	31106515	31106715	+	1	NA	NA	NA	-5231	NM_175136	68867	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	0.005000	0.472637	
mm_21264.1	chr2	156781089	156781289	-	1	NA	NA	NA	5725	NM_172118	98932	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0.045000	0.562189	
mm_122237.1	chr14	33247737	33247937	-	1	NA	NA	NA	31014	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.045000	0.587065	
mm_30584.1	chr4	5644007	5644207	+	1	NA	NA	NA	-72	NM_173426	242297	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0.085000	0.731343	
mm_105471.1	chr11	105936198	105936398	-	1	NA	NA	NA	7849	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.010000	0.562189	
mm_20494.1	chr2	130279384	130279584	-	1	NA	NA	NA	1458	NR_028528	100217428		NR_028528	ENSMUSG00000065272	Snord57	MBII-434	small nucleolar RNA, C/D box 57	snoRNA	0.010000	0.472637	
mm_105228.1	chr11	102296890	102297090	-	1	NA	NA	NA	-361	NM_001098837	217218	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0.125000	0.726368	
mm_140235.1	chr17	84116771	84116971	+	1	NA	NA	NA	38211	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.005000	0.512438	
mm_63438.1	chr7	127479759	127479959	+	1	NA	NA	NA	-5362	NM_010183	14123	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.010000	0.547264	
mm_115529.1	chr13	5867748	5867948	-	1	NA	NA	NA	6359	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.005000	0.417910	
mm_157759.1	chrX	73495062	73495262	-	1	NA	NA	NA	-7924	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.005000	0.517413	
mm_165913.1	chr4	57887485	57887685	+	1	NA	NA	NA	28679	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.010000	0.388060	
mm_146138.1	chr18	74733616	74733816	+	1	NA	NA	NA	44739	NR_028560	100217466		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	0.020000	0.601990	
mm_110314.1	chr12	33936199	33936399	-	1	NA	NA	NA	7874	NM_033522	114712	Mm.204643	NM_033522	ENSMUSG00000046518	Ferd3l	Mnato3|N-twist|Nato|Nato3|Ntwist|Ptfb|bHLHa31|fer3	Fer3-like (Drosophila)	protein-coding	0.010000	0.502488	
mm_22724.1	chr3	19644359	19644559	+	1	NA	NA	NA	-1	NM_001081281	381485	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0.015000	0.487562	-73(GCTTATATGGAC,+,0.00)
mm_101352.1	chr11	23739730	23739930	-	1	NA	NA	NA	31140	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.005000	0.398010	
mm_41994.1	chr5	107830062	107830262	+	1	NA	NA	NA	0	NM_001276397	73318	Mm.441500	NM_028502	ENSMUSG00000063447	Ube2d2b	1700013N18Rik	ubiquitin-conjugating enzyme E2D 2B	protein-coding	0.055000	0.562189	
mm_5922.1	chr1	55131539	55131739	-	1	NA	NA	NA	394	NM_025283	19070	Mm.291037	NM_025283	ENSMUSG00000025979	Mob4	2610109B12Rik|Mobkl3|Phocn|Prei3	MOB family member 4, phocein	protein-coding	0.095000	0.731343	
mm_59276.1	chr7	24904267	24904467	+	1	NA	NA	NA	21	NM_001130152	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.110000	0.701493	
mm_4483.1	chr1	173630724	173630924	+	1	NA	NA	NA	-35	NM_175026	236312	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	0.010000	0.422886	
mm_122476.1	chr14	45648183	45648383	-	1	NA	NA	NA	9770	NR_039593	100628600		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	0.010000	0.412935	
mm_134857.1	chr16	28445280	28445480	-	1	NA	NA	NA	695	NM_183064	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.055000	0.567164	
mm_35255.1	chr4	19877922	19878122	-	1	NA	NA	NA	44544	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.015000	0.398010	
mm_78781.1	chr9	43804586	43804786	+	1	NA	NA	NA	60110	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	0.015000	0.507463	
mm_103923.1	chr11	83604640	83604840	-	1	NA	NA	NA	-11653	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.010000	0.452736	
mm_99088.1	chr11	99580480	99580680	+	1	NA	NA	NA	436	NM_027157	69664	Mm.38303	NM_027157	ENSMUSG00000047253	Krtap1-5	2310043L02Rik|AI592983	keratin associated protein 1-5	protein-coding	0.020000	0.497512	
mm_94308.1	chr11	4186772	4186972	+	1	NA	NA	NA	39	NM_134023	103724	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.110000	0.731343	
mm_16855.1	chr2	11637095	11637295	-	1	NA	NA	NA	-5597	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.010000	0.497512	-31(CCACATAAAAGC,-,0.00)
mm_161232.1	chr13	92426321	92426521	+	1	NA	NA	NA	452	NM_175455	218440	Mm.213623	NM_175455	ENSMUSG00000045034	Ankrd34b	6430502M16Rik|DP58	ankyrin repeat domain 34B	protein-coding	0.135000	0.746269	
mm_153256.1	chr19	36796989	36797189	-	1	NA	NA	NA	-37143	NM_001163635	74493	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0.030000	0.477612	
mm_165796.1	chr3	141211661	141211861	-	1	NA	NA	NA	594	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding	0.065000	0.537313	
mm_33714.1	chr4	133943923	133944123	+	1	NA	NA	NA	23968	NM_016957	15331	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	0.010000	0.492537	
mm_39879.1	chr5	31077377	31077577	+	1	NA	NA	NA	16050	NM_011773	22784	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.055000	0.641791	
mm_66540.1	chr7	45188607	45188807	-	1	NA	NA	NA	7712	NM_053256	114640	Mm.207078	NM_053256	ENSMUSG00000038300	Pth2	Tifp39|Tip39	parathyroid hormone 2	protein-coding	0.010000	0.616915	
mm_25560.1	chr3	116549078	116549278	+	1	NA	NA	NA	-13795	NM_027321	109245	Mm.216027	NM_027321	ENSMUSG00000027961	Lrrc39	2010005E21Rik|9430028I06Rik|Myomasp	leucine rich repeat containing 39	protein-coding	0.005000	0.393035	
mm_80808.1	chr9	96392139	96392339	+	1	NA	NA	NA	-27940	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.000000	0.462687	
mm_7735.1	chr1	130820618	130820818	-	1	NA	NA	NA	-5966	NM_011082	18703	Mm.276414	NM_011082	ENSMUSG00000026417	Pigr	-	polymeric immunoglobulin receptor	protein-coding	0.015000	0.527363	-40(GACTATAAGAAG,-,0.00)
mm_80129.1	chr9	70581229	70581429	+	1	NA	NA	NA	38459	NM_025690	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.010000	0.353234	
mm_91597.1	chr10	40883002	40883202	-	1	NA	NA	NA	41	NM_027879	71713	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	0.060000	0.502488	-80(TTTTTTAAAGGA,+,0.00)
mm_88953.1	chr10	81364321	81364521	+	1	NA	NA	NA	1399	NM_001014836	432479	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.040000	0.547264	
mm_161943.1	chr19	4154516	4154716	+	1	NA	NA	NA	-30	NM_016933	19265	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	0.015000	0.522388	
mm_5859.1	chr1	53760675	53760875	-	1	NA	NA	NA	24440	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.010000	0.378109	
mm_1772.1	chr1	78201129	78201329	+	1	NA	NA	NA	-4093	NM_001159520	18505	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	0.040000	0.582090	
mm_107073.1	chr12	16910372	16910572	+	1	NA	NA	NA	15494	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0.005000	0.378109	
mm_114993.1	chr13	97559928	97560128	+	1	NA	NA	NA	28	NR_046157	328314	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.020000	0.452736	
mm_155504.1	chrX	73787029	73787229	+	1	NA	NA	NA	-14	NM_009279	20832	Mm.831	NM_009279	ENSMUSG00000002014	Ssr4	AW743063|C78062|Trap	signal sequence receptor, delta	protein-coding	0.100000	0.666667	
mm_169678.1	chr1	56782259	56782459	-	1	NA	NA	NA	-144908	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	0.040000	0.497512	
mm_93846.1	chr10	121740218	121740418	-	1	NA	NA	NA	381	NM_173022	270802	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	0.050000	0.686567	
mm_121723.1	chr14	16575288	16575488	-	1	NA	NA	NA	88	NM_011243	218772	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	0.095000	0.676617	
mm_162153.1	chrX	79671278	79671478	-	1	NA	NA	NA	57	NM_028025	71967	Mm.379207	NM_028025	ENSMUSG00000046942	Mageb16	2410003J06Rik	melanoma antigen family B, 16	protein-coding	0.040000	0.557214	
mm_37302.1	chr4	119233624	119233824	-	1	NA	NA	NA	-105	NM_001042411	56401	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	0.045000	0.547264	
mm_74738.1	chr8	18741479	18741679	-	1	NA	NA	NA	-17	NM_007426	11601	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	0.020000	0.537313	
mm_44251.1	chr5	5380107	5380307	-	1	NA	NA	NA	44	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.170000	0.766169	
mm_104392.1	chr11	94486153	94486353	-	1	NA	NA	NA	-943	NM_144827	217116	Mm.156123	NM_144827	ENSMUSG00000020867	Spata20	Tisp78	spermatogenesis associated 20	protein-coding	0.075000	0.597015	-83(CACTTTAAATGG,-,0.00)
mm_97900.1	chr11	83409624	83409824	+	1	NA	NA	NA	-348	NM_001013386	276952	Mm.66275	NM_001013386	ENSMUSG00000020684	Rasl10b	B230331P10Rik|Gm729|VTS58635	RAS-like, family 10, member B	protein-coding	0.160000	0.850746	
mm_170679.1	chr2	122219813	122220013	+	1	NA	NA	NA	-14926	NM_146126	20322	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	0.070000	0.577114	-96(CCCTCTTAAGGC,-,0.00),-95(CCTCTTAAGGCC,+,0.00)
mm_146423.1	chr18	84838576	84838776	+	1	NA	NA	NA	-12738	NM_025797	109672	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.050000	0.636816	
mm_87329.1	chr10	42901529	42901729	+	1	NA	NA	NA	41117	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.020000	0.517413	
mm_35747.1	chr4	45482670	45482870	-	1	NA	NA	NA	48058	NM_001033306	230126	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0.015000	0.522388	
mm_74381.1	chr8	128685793	128685993	+	1	NA	NA	NA	239	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.180000	0.766169	
mm_71623.1	chr8	57436281	57436481	+	1	NA	NA	NA	-19542	NM_009136	20284	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.020000	0.487562	
mm_55623.1	chr6	72235311	72235511	-	1	NA	NA	NA	166	NM_153778	71093	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0.070000	0.646766	
mm_8516.1	chr1	154726659	154726859	-	1	NA	NA	NA	-839	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.110000	0.686567	
mm_121351.1	chr14	116925409	116925609	+	1	NA	NA	NA	212	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.130000	0.701493	
mm_35617.1	chr4	43452373	43452573	-	1	NA	NA	NA	2153	NM_001110320	12517	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.030000	0.562189	
mm_73684.1	chr8	111553004	111553204	+	1	NA	NA	NA	14761	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.005000	0.447761	-97(GTCTATTAAAAG,-,0.00),-82(GGCTTTAAAAAG,-,0.00),-81(GCTTTAAAAAGG,+,0.00),-80(CTTTAAAAAGGC,+,0.00)
mm_53900.1	chr6	3494406	3494606	-	1	NA	NA	NA	-8	NM_178899	101202	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0.010000	0.487562	40(GCTTTTATGGAG,+,0.00)
mm_95220.1	chr11	44215538	44215738	+	1	NA	NA	NA	-184425	NM_001303244	16160	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.005000	0.417910	-72(TACCATATAAGC,-,0.00)
mm_60194.1	chr7	43408180	43408380	+	1	NA	NA	NA	0	NM_172900	243958	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0.000000	0.512438	
mm_131078.1	chr16	4731116	4731316	+	1	NA	NA	NA	4855	NM_001136066	15369	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.005000	0.303483	
mm_11442.1	chr2	32045637	32045837	+	1	NA	NA	NA	-5209	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	0.010000	0.497512	
mm_57156.1	chr6	122732349	122732549	-	1	NA	NA	NA	10296	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.020000	0.547264	
mm_111642.1	chr12	102657767	102657967	-	1	NA	NA	NA	27153	NR_035457	100316812		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.025000	0.482587	
mm_163340.1	chr12	13566040	13566240	+	1	NA	NA	NA	61506	NR_136761	102639399	Mm.122052	NR_136761		Gm35725	-	predicted gene, 35725	ncRNA	0.015000	0.572139	
mm_55332.1	chr6	56361763	56361963	-	1	NA	NA	NA	529	NM_001159952	18575	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0.010000	0.512438	
mm_23612.1	chr3	65528344	65528544	+	1	NA	NA	NA	-3	NM_178892	99929	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	0.120000	0.711443	
mm_110986.1	chr12	77113543	77113743	-	1	NA	NA	NA	-124461	NM_001252614	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.010000	0.437811	-13(TGCTTGAAAAGC,-,0.00)
mm_8708.1	chr1	158958075	158958275	-	1	NA	NA	NA	-737	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding	0.010000	0.472637	
mm_23428.1	chr3	59005739	59005939	+	1	NA	NA	NA	-1139	NM_177855	329650	Mm.240059	NM_177855	ENSMUSG00000056476	Med12l	A130035F20|A630079M02|AU044581|TRALPUSH	mediator complex subunit 12-like	protein-coding	0.160000	0.746269	
mm_23989.1	chr3	86224591	86224791	+	1	NA	NA	NA	1	NM_001077687	80877	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	0.090000	0.716418	
mm_35309.1	chr4	25242753	25242953	-	1	NA	NA	NA	23	NM_021318	57756	Mm.87325	NM_021318	ENSMUSG00000028259	Fhl5	1700027G07Rik|Act	four and a half LIM domains 5	protein-coding	0.005000	0.447761	
mm_141035.1	chr17	25273416	25273616	-	1	NA	NA	NA	-85	NM_001177610	22196	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|F830028O17Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	0.125000	0.741294	
mm_142625.1	chr17	47395286	47395486	-	1	NA	NA	NA	5220	NM_008189	14913	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	0.030000	0.452736	
mm_94300.1	chr11	4135095	4135295	+	1	NA	NA	NA	35	NM_027859	71673	Mm.240586	NM_027859	ENSMUSG00000003581	Rnf215	0610009J22Rik|AW557025|C77903	ring finger protein 215	protein-coding	0.110000	0.751244	
mm_129783.1	chr15	82794195	82794395	-	1	NA	NA	NA	-50	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.005000	0.447761	-67(CCCCATATAGGC,+,0.00),-67(CCCCATATAGGC,-,0.00),16(CTCTTTATAAGG,-,0.00),18(CTTTATAAGGGA,+,0.00)
mm_153888.1	chr19	46962209	46962409	-	1	NA	NA	NA	42	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.170000	0.820896	
mm_155085.1	chrX	48106757	48106957	+	1	NA	NA	NA	-1868	NM_001289729	170745	Mm.129279	NM_133213	ENSMUSG00000037005	Xpnpep2	9030008G12Rik|mAPP	X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	protein-coding	0.010000	0.497512	-34(TGCTTTATAAGG,-,0.00),-32(CTTTATAAGGAC,+,0.00)
mm_70795.1	chr8	22706529	22706729	+	1	NA	NA	NA	-46	NM_001159774	16150	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0.065000	0.636816	-34(GGCTCTTAAAGG,-,0.00),-33(GCTCTTAAAGGG,+,0.00),-33(GCTCTTAAAGGG,-,0.00)
mm_87206.1	chr10	39732020	39732220	+	1	NA	NA	NA	-40	NM_011264	19714	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	0.130000	0.746269	
mm_70283.1	chr8	3621505	3621705	+	1	NA	NA	NA	54	NM_001195244	100503890	Mm.254898	NM_001195244	ENSMUSG00000087687	Pet100	2900053A13Rik	PET100 homolog	protein-coding	0.050000	0.532338	
mm_56024.1	chr6	86594616	86594816	-	1	NA	NA	NA	-33458	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.025000	0.527363	
mm_87237.1	chr10	40883376	40883576	+	1	NA	NA	NA	-58	NM_031877	83767	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	0.060000	0.626866	
mm_11971.1	chr2	54436337	54436537	+	1	NA	NA	NA	50	NM_173030	271786	Mm.330227	NM_173030	ENSMUSG00000060988	Galnt13	A230002A12|A230020F20|BB182356	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	protein-coding	0.095000	0.746269	
mm_9987.1	chr1	191277522	191277722	-	1	NA	NA	NA	40496	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.015000	0.512438	
mm_59632.1	chr7	28157430	28157630	+	1	NA	NA	NA	-12218	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.020000	0.462687	-51(TTCCTTAAATGG,-,0.00),-49(CCTTAAATGGAT,+,0.00)
mm_115985.1	chr13	24281209	24281409	-	1	NA	NA	NA	-519	NM_026825	68732	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0.105000	0.706468	
mm_17247.1	chr2	25627820	25628020	-	1	NA	NA	NA	54	NM_007995	14133	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	0.025000	0.567164	
mm_50505.1	chr6	49036475	49036675	+	1	NA	NA	NA	57	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.040000	0.487562	
mm_67041.1	chr7	67239290	67239490	-	1	NA	NA	NA	16774	NM_001191051	75099	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.015000	0.552239	
mm_110967.1	chr12	76910381	76910581	-	1	NA	NA	NA	51767	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.005000	0.587065	
mm_129079.1	chr15	75841820	75842020	-	1	NA	NA	NA	-12	NM_172121	223642	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0.115000	0.676617	
mm_128568.1	chr15	57265038	57265238	-	1	NA	NA	NA	212487	NM_172378	210463	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding	0.005000	0.318408	
mm_152324.1	chr19	9938742	9938942	-	1	NA	NA	NA	-39309	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.045000	0.522388	
mm_102882.1	chr11	69410560	69410760	-	1	NA	NA	NA	3015	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.050000	0.572139	
mm_25819.1	chr3	127798140	127798340	+	1	NA	NA	NA	8327	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.005000	0.417910	
mm_62828.1	chr7	113514025	113514225	+	1	NA	NA	NA	291	NM_027379	67420	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.120000	0.805970	
mm_66015.1	chr7	30598743	30598943	-	1	NA	NA	NA	-5901	NM_021397	58206	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	0.035000	0.532338	
mm_44660.1	chr5	28458803	28459003	-	1	NA	NA	NA	-8081	NR_015562	654796	Mm.57202	NR_015562	ENSMUSG00000097726	9530036O11Rik	-	RIKEN cDNA 9530036O11Rik	ncRNA	0.035000	0.582090	
mm_86469.1	chr10	4611527	4611727	+	1	NA	NA	NA	-362	NM_001302532	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.020000	0.437811	
mm_122711.1	chr14	52237681	52237881	-	1	NA	NA	NA	-209	NM_201637	67772	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	0.010000	0.402985	
mm_62296.1	chr7	100005949	100006149	+	1	NA	NA	NA	-355	NM_133709	69121	Mm.285295	NM_133709	ENSMUSG00000030732	Chrdl2	1810022C01Rik|Chl2	chordin-like 2	protein-coding	0.125000	0.711443	
mm_50350.1	chr6	48589521	48589721	+	1	NA	NA	NA	176	NM_183309	330305	Mm.123868	NM_183309	ENSMUSG00000052730	Gm5111	A630038D02|EG330305	predicted gene 5111	protein-coding	0.015000	0.477612	
mm_31637.1	chr4	59440047	59440247	+	1	NA	NA	NA	-1514	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.005000	0.507463	-8(GCTTTACAAGCC,+,0.00)
mm_48330.1	chr5	138997541	138997741	-	1	NA	NA	NA	-2688	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.110000	0.641791	-5(TTTTTAATAGCG,+,0.00)
mm_113760.1	chr13	44748971	44749171	+	1	NA	NA	NA	17800	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.000000	0.368159	71(GCTTTTATGTGG,+,0.00)
mm_113937.1	chr13	49654309	49654509	+	1	NA	NA	NA	1331	NR_073167	70930	Mm.258915	NM_001081350	ENSMUSG00000021392	Nol8	4921532D18Rik|5730412B09Rik	nucleolar protein 8	protein-coding	0.020000	0.422886	
mm_85213.1	chr9	96862880	96863080	-	1	NA	NA	NA	26494	NM_001289646	235534	Mm.233031	NM_153420	ENSMUSG00000043587	Pxylp1	9430094M07Rik|Acpl2|BB177120|C130099A20Rik	2-phosphoxylose phosphatase 1	protein-coding	0.005000	0.427861	
mm_148948.1	chr19	7268165	7268365	+	1	NA	NA	NA	-14	NM_001320554	104383	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.135000	0.766169	
mm_29160.1	chr3	106149683	106149883	-	1	NA	NA	NA	17781	NM_009892	12655	Mm.387173	NM_009892	ENSMUSG00000040809	Chil3	AI505981|Chi3l3|ECF-L|Ym1	chitinase-like 3	protein-coding	0.000000	0.467662	
mm_41166.1	chr5	87963175	87963375	+	1	NA	NA	NA	16076	NR_045924	73471	Mm.396240	NR_045924	ENSMUSG00000099605	1700066N21Rik	-	RIKEN cDNA 1700066N21 gene	ncRNA	0.000000	0.388060	
mm_93723.1	chr10	119239721	119239921	-	1	NA	NA	NA	234	NM_027994	71902	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	0.110000	0.756219	
mm_106813.1	chr12	7977547	7977747	+	1	NA	NA	NA	-30	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.025000	0.577114	-33(TCCTATAAATGG,-,0.00)
mm_14565.1	chr2	135022152	135022352	+	1	NA	NA	NA	193364	NR_040517	78805	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA	0.000000	0.328358	
mm_8860.1	chr1	162724701	162724901	-	1	NA	NA	NA	15755	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.010000	0.412935	-66(TACTTTTAAGGG,-,0.00),-65(ACTTTTAAGGGG,+,0.00)
mm_106036.1	chr11	116077867	116078067	-	1	NA	NA	NA	-6	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.030000	0.641791	
mm_124060.1	chr14	78088913	78089113	-	1	NA	NA	NA	-6	NM_177629	219170	Mm.320428	NM_177629	ENSMUSG00000045655	Fam216b	9330158N17|AU021034	family with sequence similarity 216, member B	protein-coding	0.020000	0.432836	60(GCTTTTAGAACA,+,0.00)
mm_173171.1	chrX	46977860	46978060	+	1	NA	NA	NA	648953	NM_028514	73360	Mm.60929	NM_028514	ENSMUSG00000046615	Actrt1	1700061J02Rik|Arp-T1	actin-related protein T1	protein-coding	0.010000	0.517413	
mm_125893.1	chr15	75886896	75887096	+	1	NA	NA	NA	1727	NM_001282443	223645		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0.040000	0.597015	
mm_35287.1	chr4	21767029	21767229	-	1	NA	NA	NA	82	NM_029840	77032	Mm.87238	NM_029840	ENSMUSG00000028251	Tstd3	2610029I01Rik	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding	0.045000	0.656716	
mm_87705.1	chr10	59932709	59932909	+	1	NA	NA	NA	18961	NM_029083	74747	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.015000	0.532338	
mm_92571.1	chr10	79908814	79909014	-	1	NA	NA	NA	24	NM_001163276	216154	Mm.260089	NM_198107	ENSMUSG00000013833	Med16	95kDa|A630083L04|Thrap5|Trap95	mediator complex subunit 16	protein-coding	0.105000	0.626866	
mm_14298.1	chr2	128967313	128967513	+	1	NA	NA	NA	11	NM_178404	78751	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	0.115000	0.681592	
mm_15874.1	chr2	164835540	164835740	+	1	NA	NA	NA	1867	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.040000	0.572139	
mm_67287.1	chr7	78736004	78736204	-	1	NA	NA	NA	-17884	NR_015542	414121	Mm.482537	NR_015542	ENSMUSG00000059146	E430016F16Rik	-	RIKEN cDNA E430016F16 gene	ncRNA	0.005000	0.358209	
mm_20647.1	chr2	132029734	132029934	-	1	NA	NA	NA	154	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.110000	0.756219	
mm_169340.1	chr14	13230414	13230614	+	1	NA	NA	NA	54124	NR_121589	328354	Mm.252404	NM_177813	ENSMUSG00000051729	Gm5087	C630025C03|EG328354	predicted gene 5087	ncRNA	0.010000	0.537313	-33(CCCTTTATAAGC,+,0.00),-33(CCCTTTATAAGC,-,0.00)
mm_143089.1	chr17	57080383	57080583	-	1	NA	NA	NA	-1973	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.005000	0.512438	68(TCCTTTATGCCC,+,0.00)
mm_30316.1	chr3	151731439	151731639	-	1	NA	NA	NA	18420	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.005000	0.343284	
mm_60532.1	chr7	44480206	44480406	+	1	NA	NA	NA	-4211	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.517413	
mm_142491.1	chr17	46017541	46017741	-	1	NA	NA	NA	7522	NM_001110267	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.010000	0.293532	
mm_16866.1	chr2	12013808	12014008	-	1	NA	NA	NA	236155	NM_177268	320816	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0.010000	0.477612	
mm_109078.1	chr12	104406644	104406844	+	1	NA	NA	NA	36	NM_009252	20716	Mm.482074	NM_009252	ENSMUSG00000021091	Serpina3n	Spi2-2|Spi2.2|Spi2/eb.4	serine (or cysteine) peptidase inhibitor, clade A, member 3N	protein-coding	0.010000	0.537313	-51(GCTTTAATGTGC,+,0.00)
mm_74155.1	chr8	123383288	123383488	+	1	NA	NA	NA	9677	NM_001286363	66855	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0.045000	0.517413	
mm_67528.1	chr7	81213107	81213307	-	1	NA	NA	NA	-597	NM_008803	18584	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.145000	0.741294	
mm_132762.1	chr16	44724198	44724398	+	1	NA	NA	NA	-3	NM_145972	212547	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	0.130000	0.776119	
mm_137176.1	chr17	23815993	23816193	+	1	NA	NA	NA	12906	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.050000	0.577114	
mm_156462.1	chrX	143482911	143483111	+	1	NA	NA	NA	-35580	NM_001195048	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding	0.010000	0.328358	
mm_82146.1	chr9	123774499	123774699	+	1	NA	NA	NA	7388	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.010000	0.482587	
mm_83713.1	chr9	50751957	50752157	-	1	NA	NA	NA	297	NM_001164708	69253	Mm.1980	NM_024441	ENSMUSG00000038086	Hspb2	27kDa|2810021G24Rik|HSP27|MKBP	heat shock protein 2	protein-coding	0.010000	0.537313	-61(GCTTTACTGGCC,+,0.00)
mm_111848.1	chr12	107938735	107938935	-	1	NA	NA	NA	64579	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.005000	0.437811	
mm_165559.1	chr3	14886323	14886523	+	1	NA	NA	NA	-3	NM_009801	12349	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0.120000	0.761194	
mm_105863.1	chr11	114066081	114066281	-	1	NA	NA	NA	-230	NM_172800	237979	Mm.130504	NM_172800	ENSMUSG00000041592	Sdk2	4632412F08Rik|5330435L01Rik|Sdk-2|mKIAA1514	sidekick cell adhesion molecule 2	protein-coding	0.080000	0.651741	
mm_112501.1	chr13	8243646	8243846	+	1	NA	NA	NA	40880	NM_052977	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding	0.000000	0.363184	
mm_82786.1	chr9	28996115	28996315	-	1	NA	NA	NA	966914	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.010000	0.532338	
mm_87798.1	chr10	60299901	60300101	+	1	NA	NA	NA	15540	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.055000	0.631841	
mm_81041.1	chr9	105395280	105395480	+	1	NA	NA	NA	-12	NM_025651	66595	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1 (Drosophila)	protein-coding	0.110000	0.661692	
mm_131386.1	chr16	14207550	14207750	+	1	NA	NA	NA	44375	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.020000	0.527363	
mm_168741.1	chr12	115208479	115208679	-	1	NA	NA	NA	487215	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.000000	0.412935	
mm_117510.1	chr13	78203341	78203541	-	1	NA	NA	NA	-4568	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.055000	0.601990	
mm_42112.1	chr5	110603412	110603612	+	1	NA	NA	NA	7	NR_104449	231605	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	0.005000	0.547264	
mm_154297.1	chr19	61224520	61224720	-	1	NA	NA	NA	3798	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.020000	0.502488	
mm_146005.1	chr18	69344385	69344585	+	1	NA	NA	NA	-7	NM_013685	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.075000	0.587065	32(CTCTTTATAAGC,-,0.00),34(CTTTATAAGCCG,+,0.00)
mm_17914.1	chr2	35397091	35397291	-	1	NA	NA	NA	-17	NM_001272040	74854	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	0.010000	0.492537	
mm_35042.1	chr4	4138865	4139065	-	1	NA	NA	NA	-520	NM_001002927	18619	Mm.475097	NM_001002927	ENSMUSG00000045573	Penk	AI326464|ENK|PPA|Penk1	preproenkephalin	protein-coding	0.090000	0.696517	
mm_69243.1	chr7	127806926	127807126	-	1	NA	NA	NA	6417	NM_001040684	101502	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	0.025000	0.562189	
mm_90027.1	chr10	115411289	115411489	+	1	NA	NA	NA	26430	NM_001033261	216345	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0.010000	0.333333	
mm_166910.1	chr7	29281677	29281877	-	1	NA	NA	NA	200	NM_001082548	20733	Mm.295230	NM_011464	ENSMUSG00000074227	Spint2	AL024025|C76321|HAI-2	serine protease inhibitor, Kunitz type 2	protein-coding	0.130000	0.696517	
mm_26714.1	chr3	157993625	157993825	+	1	NA	NA	NA	38029	NM_001093753	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.010000	0.452736	
mm_9417.1	chr1	172326133	172326333	-	1	NA	NA	NA	3030	NM_008429	16524	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	0.105000	0.656716	
mm_139455.1	chr17	55952634	55952834	+	1	NA	NA	NA	111	NM_015766	50498	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	0.005000	0.572139	
mm_19932.1	chr2	116065551	116065751	-	1	NA	NA	NA	-593	NM_010825	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.090000	0.582090	
mm_10908.1	chr2	25356362	25356562	+	1	NA	NA	NA	-130	NM_031843	83768	Mm.21440	NM_031843	ENSMUSG00000026958	Dpp7	DPPII|Dpp2|QPP	dipeptidylpeptidase 7	protein-coding	0.030000	0.537313	
mm_81122.1	chr9	106463165	106463365	+	1	NA	NA	NA	2675	NM_001159652	436090	Mm.482905	NM_001159652	ENSMUSG00000091735	Gpr62	4933402E03Rik	G protein-coupled receptor 62	protein-coding	0.035000	0.676617	
mm_126172.1	chr15	78561832	78562032	+	1	NA	NA	NA	10851	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.035000	0.601990	
mm_77029.1	chr8	109251328	109251528	-	1	NA	NA	NA	89480	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo	0.050000	0.587065	
mm_93348.1	chr10	100487237	100487437	-	1	NA	NA	NA	10	NM_001033332	237500	Mm.296805	NM_001033332	ENSMUSG00000036676	Tmtc3	9130014E20Rik|B130008E12Rik|mSmile	transmembrane and tetratricopeptide repeat containing 3	protein-coding	0.105000	0.676617	
mm_96382.1	chr11	67243334	67243534	+	1	NA	NA	NA	5622	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.010000	0.482587	
mm_61022.1	chr7	49484652	49484852	+	1	NA	NA	NA	152083	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.020000	0.532338	
mm_87550.1	chr10	54073924	54074124	+	1	NA	NA	NA	1772	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.010000	0.512438	42(CTCTCTAAAGGG,-,0.00)
mm_14933.1	chr2	151542565	151542765	+	1	NA	NA	NA	182	NM_001302078	14225	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.145000	0.731343	
mm_130701.1	chr15	100687081	100687281	-	1	NA	NA	NA	739	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.060000	0.616915	
mm_102370.1	chr11	58570466	58570666	-	1	NA	NA	NA	-3223	NM_207695	258198	Mm.480307	NM_207695	ENSMUSG00000059279	Olfr224	MOR275-3|Olfr224-ps1|Olfr327-ps1	olfactory receptor 224	protein-coding	0.015000	0.492537	
mm_160882.1	chr11	69413757	69413957	-	1	NA	NA	NA	-182	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.015000	0.517413	
mm_1136.1	chr1	60609110	60609310	+	1	NA	NA	NA	-42445	NM_001045513	77300	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0.015000	0.502488	
mm_157435.1	chrX	38634928	38635128	-	1	NA	NA	NA	115	NM_021550	59048	Mm.441410	NM_021550	ENSMUSG00000048970	C1galt1c1	1500002I11Rik|AB030184|C1GalT2|C81205|Cosmc	C1GALT1-specific chaperone 1	protein-coding	0.060000	0.587065	
mm_164261.1	chr15	100313820	100314020	+	1	NA	NA	NA	9103	NM_027334	70152	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	0.020000	0.547264	
mm_31598.1	chr4	57892984	57893184	+	1	NA	NA	NA	23180	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.005000	0.328358	
mm_116844.1	chr13	54749519	54749719	-	1	NA	NA	NA	255	NM_001316710	26913	Mm.41812	NM_012014	ENSMUSG00000069227	Gprin1	GRIN1|Z16	G protein-regulated inducer of neurite outgrowth 1	protein-coding	0.185000	0.815920	
mm_141887.1	chr17	34861008	34861208	-	1	NA	NA	NA	1406	NM_001142706	14962	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0.040000	0.542289	
mm_166726.1	chr6	122308944	122309144	+	1	NA	NA	NA	34	NM_010749	17113	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	0.070000	0.636816	
mm_110830.1	chr12	72628861	72629061	-	1	NA	NA	NA	35867	NM_025522	66375	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.005000	0.497512	-89(TTTTTTAAAGTC,+,0.00)
mm_76452.1	chr8	85112015	85112215	-	1	NA	NA	NA	10980	NM_001037745	244556	Mm.334682	NM_001037745	ENSMUSG00000074194	Zfp791	EG244556	zinc finger protein 791	protein-coding	0.085000	0.507463	
mm_128708.1	chr15	63808650	63808850	-	1	NA	NA	NA	-11	NM_031378	83492	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	0.005000	0.522388	
mm_13654.1	chr2	114055040	114055240	+	1	NA	NA	NA	744	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.020000	0.482587	
mm_121887.1	chr14	21741353	21741553	-	1	NA	NA	NA	1426	NM_013849	27389	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.010000	0.587065	
mm_44486.1	chr5	23586524	23586724	-	1	NA	NA	NA	29947	NM_009274	20817	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	0.020000	0.477612	
mm_126076.1	chr15	77729062	77729262	+	1	NA	NA	NA	41	NM_001168660	71898	Mm.422856	NM_173743	ENSMUSG00000068246	Apol9b	2310016F22Rik	apolipoprotein L 9b	protein-coding	0.015000	0.522388	
mm_160270.1	chr7	116189548	116189748	-	1	NA	NA	NA	-44	NM_001305190	233765	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.010000	0.432836	
mm_165129.1	chr2	7395836	7396036	-	1	NA	NA	NA	64	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.025000	0.407960	
mm_20991.1	chr2	152227148	152227348	-	1	NA	NA	NA	408	NM_007788	12995	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0.075000	0.681592	
mm_65211.1	chr7	19697895	19698095	-	1	NA	NA	NA	403	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.005000	0.437811	-20(AACTATAAGAGG,-,0.00)
mm_77711.1	chr8	126591963	126592163	-	1	NA	NA	NA	1373	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.020000	0.542289	
mm_63865.1	chr7	135684190	135684390	+	1	NA	NA	NA	-31976	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.015000	0.542289	
mm_81726.1	chr9	112504909	112505109	+	1	NA	NA	NA	248435	NR_033433	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA	0.000000	0.417910	
mm_170440.1	chr18	80028965	80029165	+	1	NA	NA	NA	-17830	NM_053117	93737	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0.025000	0.547264	
mm_23823.1	chr3	81036266	81036466	+	1	NA	NA	NA	-50	NM_019971	54635	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C	platelet-derived growth factor, C polypeptide	protein-coding	0.030000	0.572139	
mm_120369.1	chr14	64587082	64587282	+	1	NA	NA	NA	-933	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA	0.115000	0.691542	
mm_137116.1	chr17	22497282	22497482	+	1	NA	NA	NA	73180	NM_001331198	74149	Mm.30767	NM_198003	ENSMUSG00000071266	Zfp946	1300003B13Rik	zinc finger protein 946	protein-coding	0.015000	0.497512	
mm_166985.1	chr7	45714784	45714984	+	1	NA	NA	NA	323	NM_020011	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.020000	0.587065	-62(CCTTTAATGCCC,+,0.00)
mm_148032.1	chr18	70053338	70053538	-	1	NA	NA	NA	150	NM_001302798	80718	Mm.246753	NM_030554	ENSMUSG00000024511	Rab27b	2310021G14Rik|B130064M09Rik	RAB27B, member RAS oncogene family	protein-coding	0.035000	0.597015	
mm_62002.1	chr7	91226420	91226620	+	1	NA	NA	NA	135734	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.010000	0.358209	
mm_71344.1	chr8	45627861	45628061	+	1	NA	NA	NA	210	NM_001310707	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.055000	0.597015	71(GGTTCTAAAGGG,-,0.00)
mm_147754.1	chr18	61211490	61211690	-	1	NA	NA	NA	6	NM_007885	13521	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	0.115000	0.736318	70(GGGTATTAAAGG,-,0.00)
mm_7175.1	chr1	92318158	92318358	-	1	NA	NA	NA	-137917	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.015000	0.527363	
mm_30798.1	chr4	20007889	20008089	+	1	NA	NA	NA	-254	NM_001317723	50500	Mm.24375	NM_015767	ENSMUSG00000073988	Ttpa	alpha-TTP	tocopherol (alpha) transfer protein	protein-coding	0.005000	0.492537	
mm_46997.1	chr5	115341067	115341267	-	1	NA	NA	NA	-6	NM_029645	384281	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	0.120000	0.666667	
mm_162605.1	chr1	183221388	183221588	-	1	NA	NA	NA	41	NM_001278218	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0.125000	0.731343	
mm_17933.1	chr2	35874583	35874783	-	1	NA	NA	NA	55493	NR_040618	77665	Mm.400558	NR_040618	ENSMUSG00000086449	9030204H09Rik	-	RIKEN cDNA 9030204H09 gene	ncRNA	0.025000	0.507463	
mm_13619.1	chr2	113440772	113440972	+	1	NA	NA	NA	-192	NM_001285459	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.030000	0.562189	-45(CTTTTAAAAACC,+,0.00)
mm_82856.1	chr9	31459188	31459388	-	1	NA	NA	NA	4950	NM_144936	235135	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	0.005000	0.368159	
mm_151970.1	chr19	5806407	5806607	-	1	NA	NA	NA	-3835	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.020000	0.532338	
mm_40468.1	chr5	53677023	53677223	+	1	NA	NA	NA	21465	NR_024201	19866		NR_024201	ENSMUSG00000089083	Rnu7	-	U7 small nuclear RNA	snRNA	0.010000	0.402985	
mm_66680.1	chr7	45812815	45813015	-	1	NA	NA	NA	1401	NM_011181	19158	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0.020000	0.572139	
mm_38232.1	chr4	136028772	136028972	-	1	NA	NA	NA	-7223	NM_013736	27224	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	0.015000	0.427861	
mm_149062.1	chr19	8839492	8839692	+	1	NA	NA	NA	264	NM_008144	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.020000	0.537313	
mm_62897.1	chr7	116443481	116443681	+	1	NA	NA	NA	-123	NM_011083	18704	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	protein-coding	0.100000	0.716418	
mm_100846.1	chr11	5788169	5788369	-	1	NA	NA	NA	-214	NM_001146309	13169	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0.080000	0.537313	
mm_3722.1	chr1	154204785	154204985	+	1	NA	NA	NA	3698	NM_001204908	100503355	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	ENSMUSG00000066797|Gm10178|Gm203	zinc finger protein 648	protein-coding	0.080000	0.626866	
mm_39378.1	chr5	12466777	12466977	+	1	NA	NA	NA	83711	NM_028882	108151	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.005000	0.373134	
mm_103675.1	chr11	79242396	79242596	-	1	NA	NA	NA	528	NM_001042565	78889	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.000000	0.273632	
mm_132270.1	chr16	32878011	32878211	+	1	NA	NA	NA	327	NM_001159349	69823	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	0.120000	0.766169	
mm_153476.1	chr19	41273690	41273890	-	1	NA	NA	NA	-9786	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.010000	0.477612	
mm_103764.1	chr11	81573429	81573629	-	1	NA	NA	NA	10	NM_001033765	237880	Mm.435528	NM_001033765		1700071K01Rik	-	RIKEN cDNA 1700071K01 gene	protein-coding	0.045000	0.502488	
mm_101954.1	chr11	50295937	50296137	-	1	NA	NA	NA	-3701	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.000000	0.258706	
mm_155789.1	chrX	96713451	96713651	+	1	NA	NA	NA	83	NM_029536	76206	Mm.256065	NM_029536	ENSMUSG00000031210	Gpr165	6530406P05Rik	G protein-coupled receptor 165	protein-coding	0.025000	0.567164	
mm_58643.1	chr7	6191126	6191326	+	1	NA	NA	NA	-5864	NM_178028	232836	Mm.246599	NM_178028	ENSMUSG00000034660	Galp	-	galanin-like peptide	protein-coding	0.010000	0.393035	
mm_110449.1	chr12	51611505	51611705	-	1	NA	NA	NA	18264	NM_001198835	12810	Mm.21325	NM_007728	ENSMUSG00000020953	Coch	AW122937|Coch-5B2|D12H14S564E	cochlin	protein-coding	0.005000	0.338308	-87(CTTTATATAGTT,+,0.00)
mm_106455.1	chr11	120020034	120020234	-	1	NA	NA	NA	-5272	NR_029767	723844		NR_029767	ENSMUSG00000065600	Mir338	Mirn338|mir-338|mmu-mir-338	microRNA 338	ncRNA	0.030000	0.641791	
mm_39861.1	chr5	30968542	30968742	+	1	NA	NA	NA	-35	NM_053085	69852	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	0.025000	0.626866	
mm_138296.1	chr17	34630597	34630797	+	1	NA	NA	NA	1011	NM_030890	260297	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31	proline-rich transmembrane protein 1	protein-coding	0.055000	0.661692	
mm_143232.1	chr17	63494272	63494472	-	1	NA	NA	NA	6208	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.010000	0.432836	
mm_54498.1	chr6	35510239	35510439	-	1	NA	NA	NA	29549	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.368159	51(CTATTTTAAAGG,-,0.00)
mm_5079.1	chr1	4360184	4360384	-	1	NA	NA	NA	30	NM_011283	19888	Mm.294263	NM_011283	ENSMUSG00000025900	Rp1	Dcdc3|Orp1|Rp1h|mG145	retinitis pigmentosa 1 (human)	protein-coding	0.015000	0.353234	
mm_102661.1	chr11	64060140	64060340	-	1	NA	NA	NA	19232	NM_178379	70383	Mm.340211	NM_178379	ENSMUSG00000042148	Cox10	2410004F01Rik|AU042636	cytochrome c oxidase assembly protein 10	protein-coding	0.010000	0.502488	
mm_126041.1	chr15	76904289	76904489	+	1	NA	NA	NA	318	NM_012053	26961	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0.120000	0.631841	40(CTACATTAAAGG,-,0.00)
mm_66225.1	chr7	35029204	35029404	-	1	NA	NA	NA	27262	NM_009884	12611	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.005000	0.557214	
mm_124010.1	chr14	76110626	76110826	-	1	NA	NA	NA	89	NM_026177	67467	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0.075000	0.601990	
mm_949.1	chr1	57377541	57377741	+	1	NA	NA	NA	21	NM_028546	73467	Mm.263673	NM_028546	ENSMUSG00000038323	1700066M21Rik	AI428479	RIKEN cDNA 1700066M21 gene	protein-coding	0.150000	0.781095	
mm_116622.1	chr13	48880217	48880417	-	1	NA	NA	NA	-9432	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.000000	0.318408	
mm_153653.1	chr19	44394664	44394864	-	1	NA	NA	NA	12945	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.005000	0.393035	
mm_3192.1	chr1	135801605	135801805	+	1	NA	NA	NA	2194	NM_001112702	21952	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	0.000000	0.442786	-84(AGCTTTTAAAAC,-,0.00),-83(GCTTTTAAAACC,+,0.00),-82(CTTTTAAAACCA,+,0.00)
mm_130485.1	chr15	98754987	98755187	-	1	NA	NA	NA	8031	NM_007478	11842	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	0.015000	0.402985	
mm_106822.1	chr12	7985258	7985458	+	1	NA	NA	NA	7681	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.000000	0.487562	
mm_116977.1	chr13	56183674	56183874	-	1	NA	NA	NA	-4889	NM_001168615	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.015000	0.507463	
mm_144986.1	chr18	38250200	38250400	+	1	NA	NA	NA	51	NM_024179	66839	Mm.281086	NM_024179	ENSMUSG00000024442	0610009O20Rik	2700004E22Rik|Dele|Kiaa0141	RIKEN cDNA 0610009O20 gene	protein-coding	0.065000	0.661692	
mm_100758.1	chr11	4464198	4464398	-	1	NA	NA	NA	-23216	NM_029458	75828	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0.005000	0.552239	
mm_22962.1	chr3	32529390	32529590	+	1	NA	NA	NA	8	NM_024200	67414	Mm.290414	NM_024200	ENSMUSG00000027668	Mfn1	2310002F04Rik|6330416C07Rik|D3Ertd265e|HR2|mKIAA4032	mitofusin 1	protein-coding	0.070000	0.656716	
mm_58080.1	chr6	136941610	136941810	-	1	NA	NA	NA	46	NM_001301308	11857	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	0.010000	0.517413	
mm_126810.1	chr15	87654877	87655077	+	1	NA	NA	NA	29747	NM_134096	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.005000	0.507463	
mm_49595.1	chr6	30670049	30670249	+	1	NA	NA	NA	23600	NM_031998	83922	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	0.000000	0.442786	-88(CTCCATTTAAAG,-,0.00),-86(CCATTTAAAGTC,+,0.00)
mm_161059.1	chr12	69892837	69893037	+	1	NA	NA	NA	-168	NM_178628	73991	Mm.474462	NM_178628	ENSMUSG00000021066	Atl1	4930435M24Rik|Adfsp|Fsp1|Spg3|Spg3a	atlastin GTPase 1	protein-coding	0.180000	0.781095	
mm_24766.1	chr3	95499762	95499962	+	1	NA	NA	NA	652	NM_007802	13038	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.020000	0.422886	
mm_50373.1	chr6	48680530	48680730	+	1	NA	NA	NA	-3948	NM_001243200	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.020000	0.477612	-32(ACTTTTATGCCC,+,0.00)
mm_128340.1	chr15	38633336	38633536	-	1	NA	NA	NA	-28468	NM_025494	66335	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.015000	0.527363	
mm_15097.1	chr2	153345749	153345949	+	1	NA	NA	NA	-39	NR_040318	72326	Mm.400102	NR_040318	ENSMUSG00000073236	2500004C02Rik	-	RIKEN cDNA 2500004C02 gene	ncRNA	0.075000	0.542289	
mm_90281.1	chr10	122860288	122860488	+	1	NA	NA	NA	125336	NR_029527	387251		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.010000	0.502488	
mm_32698.1	chr4	116067128	116067328	+	1	NA	NA	NA	7842	NM_025641	66576	Mm.181721	NM_025641	ENSMUSG00000063882	Uqcrh	2210416J04Rik|2310021J10Rik|2610041P16Rik	ubiquinol-cytochrome c reductase hinge protein	protein-coding	0.020000	0.462687	-79(GTTTTTAAAGAG,+,0.00)
mm_73258.1	chr8	104340553	104340753	+	1	NA	NA	NA	59	NM_024217	68119	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.065000	0.661692	
mm_106330.1	chr11	118340528	118340728	-	1	NA	NA	NA	1906	NM_021440	58251	Mm.439815	NM_021440	ENSMUSG00000076433	BC100451	Cep295nl|Ddc8|FS39|Kiaa1731nl	cDNA sequence BC100451	protein-coding	0.005000	0.492537	
mm_165759.1	chr3	115774135	115774335	+	1	NA	NA	NA	-59180	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.010000	0.417910	
mm_63291.1	chr7	126799486	126799686	+	1	NA	NA	NA	-332	NM_007438	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.055000	0.616915	
mm_75557.1	chr8	57796448	57796648	-	1	NA	NA	NA	-143493	NM_144731	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0.060000	0.512438	
mm_93662.1	chr10	117693068	117693268	-	1	NA	NA	NA	17590	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.020000	0.442786	52(CTTTTTATGGTA,+,0.00)
mm_119541.1	chr14	48120753	48120953	+	1	NA	NA	NA	-16	NM_033602	93834	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	0.185000	0.815920	
mm_28796.1	chr3	96058353	96058553	-	1	NA	NA	NA	2	NM_013841	22365	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	0.060000	0.587065	
mm_31558.1	chr4	57434306	57434506	+	1	NA	NA	NA	-70114	NR_038178	73349	Mm.393774	NR_038178		1700042G15Rik	-	RIKEN cDNA 1700042G15 gene	ncRNA	0.080000	0.646766	
mm_102755.1	chr11	67299241	67299441	-	1	NA	NA	NA	22217	NM_177369	17885	Mm.340163	NM_177369	ENSMUSG00000055775	Myh8	4832426G23Rik|AI327267|MHCp|MyHC-pn|Myhs-p|Myhsp	myosin, heavy polypeptide 8, skeletal muscle, perinatal	protein-coding	0.025000	0.557214	
mm_164551.1	chr17	13590886	13591086	+	1	NA	NA	NA	-36892	NR_045437	72578	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0.005000	0.432836	
mm_10948.1	chr2	25607767	25607967	+	1	NA	NA	NA	579	NM_001024616	227624	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	0.085000	0.666667	
mm_52081.1	chr6	97828225	97828425	+	1	NA	NA	NA	21267	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.467662	
mm_95338.1	chr11	46817451	46817651	+	1	NA	NA	NA	6752	NM_178759	276891	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.010000	0.492537	
mm_155898.1	chrX	101653414	101653614	+	1	NA	NA	NA	13296	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.020000	0.378109	
mm_22357.1	chr2	181020339	181020539	-	1	NA	NA	NA	18738	NM_015730	11438	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	0.000000	0.437811	
mm_146944.1	chr18	32448339	32448539	-	1	NA	NA	NA	-70155	NR_045403	402767	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.005000	0.447761	
mm_168749.1	chr12	115758366	115758566	-	1	NA	NA	NA	-62672	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.005000	0.427861	
mm_158919.1	chr1	57406448	57406648	+	1	NA	NA	NA	0	NM_001081181	68115	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	0.080000	0.611940	
mm_34866.1	chr4	155557854	155558054	+	1	NA	NA	NA	-4438	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.010000	0.358209	
mm_53349.1	chr6	129350165	129350365	+	1	NA	NA	NA	21	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.000000	0.373134	
mm_116262.1	chr13	34246851	34247051	-	1	NA	NA	NA	83987	NM_001110515	69666	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.005000	0.507463	
mm_10500.1	chr2	15055292	15055492	+	1	NA	NA	NA	30	NM_029466	75869	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	0.130000	0.721393	
mm_13162.1	chr2	92608212	92608412	+	1	NA	NA	NA	8605	NM_023850	76969	Mm.38021	NM_023850	ENSMUSG00000027221	Chst1	2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KSGAL6ST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding	0.035000	0.497512	
mm_105048.1	chr11	100619528	100619728	-	1	NA	NA	NA	540	NM_019795	56354	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0.125000	0.676617	
mm_15908.1	chr2	165055579	165055779	+	1	NA	NA	NA	43	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.055000	0.601990	
mm_132364.1	chr16	34784686	34784886	+	1	NA	NA	NA	-164	NM_139300	107589	Mm.33360	NM_139300	ENSMUSG00000022836	Mylk	9530072E15Rik|A930019C19Rik|AW489456|KRP|MLCK108|MLCK210|Mlck|nmMlck|smMLCK	myosin, light polypeptide kinase	protein-coding	0.015000	0.517413	
mm_116544.1	chr13	45946154	45946354	-	1	NA	NA	NA	18737	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.040000	0.552239	
mm_63823.1	chr7	134670591	134670791	+	1	NA	NA	NA	4	NM_001033420	330662	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik	dedicator of cytokinesis 1	protein-coding	0.125000	0.721393	
mm_92779.1	chr10	81230664	81230864	-	1	NA	NA	NA	15	NM_178662	16467	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	0.035000	0.611940	
mm_49496.1	chr6	29735574	29735774	+	1	NA	NA	NA	177	NM_176996	319757	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	0.075000	0.736318	1(CGGTTTTAATGG,-,0.00),3(GTTTTAATGGTG,+,0.00)
mm_66594.1	chr7	45434365	45434565	-	1	NA	NA	NA	-1	NM_011304	20174	Mm.34410	NM_011304	ENSMUSG00000003868	Ruvbl2	mp47|p47	RuvB-like protein 2	protein-coding	0.050000	0.552239	
mm_59214.1	chr7	24547385	24547585	+	1	NA	NA	NA	335	NM_009532	22594	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	0.035000	0.601990	
mm_96677.1	chr11	69418160	69418360	+	1	NA	NA	NA	-4585	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.065000	0.577114	
mm_100233.1	chr11	117204753	117204953	+	1	NA	NA	NA	5192	NM_001113486	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.020000	0.572139	
mm_25124.1	chr3	102012402	102012602	+	1	NA	NA	NA	2357	NM_178777	18072	Mm.137286	NM_178777	ENSMUSG00000048540	Nhlh2	6230401I09Rik|Hen2|NSCL2|Nscl-2|bHLHa34	nescient helix loop helix 2	protein-coding	0.035000	0.606965	
mm_64064.1	chr7	140856652	140856852	+	1	NA	NA	NA	-369	NM_018742	54399	Mm.155696	NM_018742	ENSMUSG00000025484	Bet1l	2610021K23Rik|Gs15	Bet1 golgi vesicular membrane trafficking protein like	protein-coding	0.065000	0.601990	
mm_6998.1	chr1	86359859	86360059	-	1	NA	NA	NA	385	NR_015507	319336	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	ENSMUSG00000073627	RIKEN cDNA C130036L24 gene	ncRNA	0.070000	0.552239	
mm_11092.1	chr2	27895197	27895397	+	1	NA	NA	NA	8872	NM_015734	12831	Mm.7281	NM_015734	ENSMUSG00000026837	Col5a1	AI413331	collagen, type V, alpha 1	protein-coding	0.005000	0.522388	
mm_114727.1	chr13	83721184	83721384	+	1	NA	NA	NA	-6822	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.050000	0.621891	
mm_170312.1	chr18	36255389	36255589	+	1	NA	NA	NA	-25673	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.010000	0.517413	-27(GTTTATAGAGTC,+,0.00)
mm_23514.1	chr3	60560100	60560300	+	1	NA	NA	NA	59021	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.000000	0.318408	
mm_58020.1	chr6	136661632	136661832	-	1	NA	NA	NA	161	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.080000	0.646766	
mm_44545.1	chr5	24577215	24577415	-	1	NA	NA	NA	152	NM_013853	27407	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	0.080000	0.676617	
mm_155593.1	chrX	81094459	81094659	+	1	NA	NA	NA	23915	NM_138751	192216	Mm.490421	NM_138751	ENSMUSG00000025666	Tmem47	3010015F07Rik|AI115536|BCMP1|Tm4sf10	transmembrane protein 47	protein-coding	0.005000	0.407960	
mm_8777.1	chr1	161131357	161131557	-	1	NA	NA	NA	22	NM_001039482	226541	Mm.255165	NM_144876	ENSMUSG00000026705	Klhl20	AI504637|D930050H05Rik|Kleip|mKIAA4210	kelch-like 20	protein-coding	0.060000	0.597015	
mm_104853.1	chr11	99337849	99338049	-	1	NA	NA	NA	16	NM_001033397	320864	Mm.440509	NM_001033397	ENSMUSG00000075570	Krt26	4732407F15Rik|Krt25b	keratin 26	protein-coding	0.055000	0.487562	-49(TCCTATAAAAGC,-,0.00)
mm_136578.1	chr17	3557357	3557557	+	1	NA	NA	NA	256	NM_146074	224481	Mm.226554	NM_146074	ENSMUSG00000036983	Tfb1m	AI429207	transcription factor B1, mitochondrial	protein-coding	0.125000	0.676617	
mm_157331.1	chrX	23364967	23365167	-	1	NA	NA	NA	15	NM_026167	67455	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	0.055000	0.686567	
mm_136115.1	chr16	85550328	85550528	-	1	NA	NA	NA	-55	NM_144853	224405	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding	0.030000	0.592040	
mm_14327.1	chr2	129367213	129367413	+	1	NA	NA	NA	-2589	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.020000	0.482587	
mm_144309.1	chr18	12569166	12569366	+	1	NA	NA	NA	65067	NM_001347461	16774	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0.005000	0.547264	
mm_85753.1	chr9	108648667	108648867	-	1	NA	NA	NA	613	NM_011790	23807	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.120000	0.646766	
mm_56511.1	chr6	99375955	99376155	-	1	NA	NA	NA	59290	NM_053202	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.025000	0.542289	
mm_104076.1	chr11	86586812	86587012	-	1	NA	NA	NA	-2754	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.015000	0.452736	
mm_42604.1	chr5	117769513	117769713	+	1	NA	NA	NA	-97226	NM_008712	18125	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.010000	0.358209	
mm_32947.1	chr4	119540394	119540594	+	1	NA	NA	NA	833	NM_172699	230700	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	0.040000	0.522388	
mm_158894.1	chr1	21368177	21368377	+	1	NA	NA	NA	-54	NM_001033904	433278	Mm.26006	NM_001033904	ENSMUSG00000041722	Khdc1c	Khdc1b	KH domain containing 1C	protein-coding	0.005000	0.542289	
mm_165969.1	chr4	97579400	97579600	+	1	NA	NA	NA	-2443	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.015000	0.492537	
mm_48735.1	chr5	147566674	147566874	-	1	NA	NA	NA	136194	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.010000	0.522388	-47(CCTTTTATGAGA,+,0.00)
mm_76995.1	chr8	107085312	107085512	-	1	NA	NA	NA	10694	NR_106043	102465652		NR_106043	ENSMUSG00000098671	Mir7075	Gm27821|mmu-mir-7075	microRNA 7075	ncRNA	0.070000	0.587065	
mm_146482.1	chr18	89206508	89206708	+	1	NA	NA	NA	9181	NM_001039149	225825	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.000000	0.398010	
mm_25126.1	chr3	102086342	102086542	+	1	NA	NA	NA	-13	NM_009814	12373	Mm.15343	NM_009814	ENSMUSG00000027861	Casq2	AA033488|AW146219|Csq2|ESTM52|cCSQ	calsequestrin 2	protein-coding	0.020000	0.497512	
mm_108257.1	chr12	78350954	78351154	+	1	NA	NA	NA	124399	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.055000	0.507463	
mm_98110.1	chr11	87025560	87025760	+	1	NA	NA	NA	-31898	NM_001005341	77864	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee-like 2 (Drosophila)	protein-coding	0.010000	0.373134	
mm_98039.1	chr11	85352686	85352886	+	1	NA	NA	NA	-378	NM_001166642	192197	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.050000	0.522388	
mm_168139.1	chr10	30945878	30946078	+	1	NA	NA	NA	-103195	NM_013904	15214	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	0.010000	0.457711	
mm_150239.1	chr19	34067430	34067630	+	1	NA	NA	NA	172	NM_027340	70166	Mm.75602	NM_027340	ENSMUSG00000024770	Lipn	2210418G03Rik|Lipl4	lipase, family member N	protein-coding	0.015000	0.512438	
mm_37963.1	chr4	133353391	133353591	-	1	NA	NA	NA	-14176	NM_199306	230796	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	0.030000	0.532338	85(GTCTCGAAAAGG,-,0.00)
mm_53358.1	chr6	129352620	129352820	+	1	NA	NA	NA	2476	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.010000	0.457711	
mm_115377.1	chr13	113093726	113093926	+	1	NA	NA	NA	7155	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.015000	0.437811	
mm_79768.1	chr9	62825992	62826192	+	1	NA	NA	NA	-12695	NM_001033175	76524	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.005000	0.482587	
mm_61775.1	chr7	83631905	83632105	+	1	NA	NA	NA	-12	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.070000	0.641791	
mm_61798.1	chr7	84152061	84152261	+	1	NA	NA	NA	-268	NM_133722	70178	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.130000	0.751244	
mm_16080.1	chr2	168532264	168532464	+	1	NA	NA	NA	58001	NM_001291178	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.030000	0.527363	
mm_157302.1	chrX	20929582	20929782	-	1	NA	NA	NA	1873	NM_008823	18636	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	0.010000	0.572139	
mm_1194.1	chr1	62703825	62704025	+	1	NA	NA	NA	608	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.035000	0.422886	
mm_167085.1	chr7	102017293	102017493	+	1	NA	NA	NA	762	NM_010531	16068	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.000000	0.482587	
mm_35932.1	chr4	53032355	53032555	-	1	NA	NA	NA	20575	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.015000	0.482587	
mm_10568.1	chr2	18064225	18064425	+	1	NA	NA	NA	-260	NM_001252560	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.150000	0.791045	
mm_106704.1	chr12	3780442	3780642	+	1	NA	NA	NA	-26438	NM_007872	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.020000	0.621891	
mm_59058.1	chr7	19414840	19415040	+	1	NA	NA	NA	3846	NM_007710	12715	Mm.2375	NM_007710	ENSMUSG00000030399	Ckm	Ckmm|M-CK|MCK	creatine kinase, muscle	protein-coding	0.040000	0.567164	
mm_80651.1	chr9	89960890	89961090	+	1	NA	NA	NA	51215	NM_001039655	19417	Mm.44561	NM_011245	ENSMUSG00000032356	Rasgrf1	AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF	RAS protein-specific guanine nucleotide-releasing factor 1	protein-coding	0.000000	0.328358	
mm_58600.1	chr7	5051372	5051572	+	1	NA	NA	NA	-60	NM_026900	68992	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	0.070000	0.606965	
mm_158883.1	chr1	9848344	9848544	+	1	NA	NA	NA	163	NM_001037759	170755	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.110000	0.696517	
mm_113304.1	chr13	30749869	30750069	+	1	NA	NA	NA	736	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.020000	0.537313	
mm_35053.1	chr4	6355269	6355469	-	1	NA	NA	NA	-10311	NM_016807	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.015000	0.427861	
mm_128332.1	chr15	38300604	38300804	-	1	NA	NA	NA	7	NM_013692	21847	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.105000	0.701493	
mm_152583.1	chr19	11603214	11603414	-	1	NA	NA	NA	1490	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.005000	0.447761	
mm_79695.1	chr9	60813588	60813788	+	1	NA	NA	NA	19140	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.015000	0.592040	
mm_116506.1	chr13	45002046	45002246	-	1	NA	NA	NA	-50	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.185000	0.815920	
mm_90591.1	chr10	128277549	128277749	+	1	NA	NA	NA	7073	NM_019963	20847	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	0.020000	0.457711	
mm_62378.1	chr7	100706704	100706904	+	1	NA	NA	NA	102	NM_178764	319604	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0.090000	0.636816	
mm_39136.1	chr4	155200664	155200864	-	1	NA	NA	NA	21771	NM_011385	20481	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.005000	0.442786	
mm_98557.1	chr11	95145004	95145204	+	1	NA	NA	NA	51	NR_040279	320453	Mm.442212	NR_040279	ENSMUSG00000086552	Dlx4os	A730090H04Rik|Dlx4as	distal-less homeobox 4, opposite strand	ncRNA	0.065000	0.552239	
mm_23392.1	chr3	57441187	57441387	+	1	NA	NA	NA	15877	NM_145539	229302	Mm.26618	NM_145539	ENSMUSG00000027801	Tm4sf4	Iltmp	transmembrane 4 superfamily member 4	protein-coding	0.005000	0.333333	
mm_141809.1	chr17	34603383	34603583	-	1	NA	NA	NA	78	NM_019403	54197	Mm.274542	NM_019403	ENSMUSG00000015478	Rnf5	2410131O05Rik|AA407576|NG2	ring finger protein 5	protein-coding	0.070000	0.601990	
mm_18249.1	chr2	52206122	52206322	-	1	NA	NA	NA	-84780	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.025000	0.427861	-61(GTCTTTAAAAAC,-,0.00),-59(CTTTAAAAACAC,+,0.00)
mm_12560.1	chr2	72476142	72476342	+	1	NA	NA	NA	23	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.145000	0.761194	
mm_72642.1	chr8	84701715	84701915	+	1	NA	NA	NA	358	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.065000	0.666667	
mm_134278.1	chr16	14159159	14159359	-	1	NA	NA	NA	15	NM_001081154	223989	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis arrest female 1	protein-coding	0.095000	0.676617	
mm_131336.1	chr16	13358307	13358507	+	1	NA	NA	NA	-14	NM_153588	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.030000	0.582090	
mm_96409.1	chr11	67253964	67254164	+	1	NA	NA	NA	16252	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.020000	0.547264	
mm_42499.1	chr5	115489357	115489557	+	1	NA	NA	NA	-4973	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.075000	0.517413	
mm_69906.1	chr7	141639879	141640079	-	1	NA	NA	NA	15340	NM_001330001	353328	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0.005000	0.432836	
mm_99606.1	chr11	104576913	104577113	+	1	NA	NA	NA	-14815	NR_130177	100415912	Mm.446786	NR_130177		Gm11665	Gm11664|OTTMUSG00000003182|OTTMUSG00000003183	predicted gene 11665	ncRNA	0.010000	0.562189	-75(TGGTATAAAAGG,-,0.00)
mm_32704.1	chr4	116075429	116075629	+	1	NA	NA	NA	260	NM_153521	230654	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	0.110000	0.721393	
mm_33166.1	chr4	126023389	126023589	+	1	NA	NA	NA	-1170	NR_045561	12986	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.015000	0.547264	
mm_55467.1	chr6	67954612	67954812	-	1	NA	NA	NA	-389013	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.000000	0.427861	
mm_110247.1	chr12	31351339	31351539	-	1	NA	NA	NA	32	NM_007861	13382	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	0.105000	0.626866	
mm_50496.1	chr6	49022877	49023077	+	1	NA	NA	NA	-13541	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.000000	0.452736	
mm_100277.1	chr11	117782270	117782470	+	1	NA	NA	NA	73	NM_001195089	217356	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0.020000	0.611940	
mm_40300.1	chr5	43665356	43665556	+	1	NA	NA	NA	3077	NM_172274	231214	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	0.015000	0.427861	-34(GCTTATTAAAGC,-,0.00)
mm_119895.1	chr14	54938375	54938575	+	1	NA	NA	NA	1978	NM_029390	67272	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	0.015000	0.512438	
mm_135679.1	chr16	52419959	52420159	-	1	NA	NA	NA	33022	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.358209	
mm_64484.1	chr7	143066635	143066835	+	1	NA	NA	NA	-2633	NM_020285	56844	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.015000	0.562189	
mm_57560.1	chr6	127109402	127109602	-	1	NA	NA	NA	50	NM_177003	319801	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	0.100000	0.641791	
mm_34333.1	chr4	142307625	142307825	+	1	NA	NA	NA	-68324	NM_001109685	71529	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	0.030000	0.487562	
mm_41289.1	chr5	90463609	90463809	+	1	NA	NA	NA	2839	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.328358	25(CAGTTTAAAAAC,-,0.00)
mm_86003.1	chr9	112232355	112232555	-	1	NA	NA	NA	46	NM_001177616	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.015000	0.487562	
mm_84905.1	chr9	79961967	79962167	-	1	NA	NA	NA	15815	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.030000	0.606965	
mm_134650.1	chr16	21995291	21995491	-	1	NA	NA	NA	151	NM_001289582	239759	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	0.055000	0.522388	89(GTCTTTAAGAAG,-,0.00)
mm_31747.1	chr4	63344471	63344671	+	1	NA	NA	NA	15	NM_008768	18405	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding	0.020000	0.532338	
mm_52300.1	chr6	108805581	108805781	+	1	NA	NA	NA	22622	NM_026011	67166	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0.005000	0.298507	-41(CAGTTTTAAAGC,-,0.00),27(TTCTATTAAAAG,-,0.00),29(CTATTAAAAGAC,+,0.00)
mm_166249.1	chr5	77351222	77351422	-	1	NA	NA	NA	40838	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.030000	0.497512	
mm_98839.1	chr11	97440129	97440329	+	1	NA	NA	NA	-9931	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.125000	0.805970	
mm_65913.1	chr7	30194938	30195138	-	1	NA	NA	NA	10	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.100000	0.681592	
mm_153537.1	chr19	41916927	41917127	-	1	NA	NA	NA	5156	NM_023418	18648	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	0.010000	0.472637	
mm_61323.1	chr7	68189949	68190149	+	1	NA	NA	NA	74184	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.035000	0.492537	
mm_138912.1	chr17	43600228	43600428	+	1	NA	NA	NA	-8819	NR_045444	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.015000	0.427861	
mm_165834.1	chr3	154711313	154711513	+	1	NA	NA	NA	280	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.005000	0.402985	
mm_98386.1	chr11	94210320	94210520	+	1	NA	NA	NA	-1034	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.070000	0.557214	
mm_153435.1	chr19	40959634	40959834	-	1	NA	NA	NA	34801	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.015000	0.601990	
mm_81802.1	chr9	116189080	116189280	+	1	NA	NA	NA	-13817	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.020000	0.472637	
mm_154995.1	chrX	38600494	38600694	+	1	NA	NA	NA	-64	NM_026902	68995	Mm.262453	NM_026902	ENSMUSG00000000355	Mcts1	1500019M23Rik|MCT-1	malignant T cell amplified sequence 1	protein-coding	0.075000	0.537313	
mm_75906.1	chr8	71381364	71381564	-	1	NA	NA	NA	488	NM_010150	13864	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	0.135000	0.721393	
mm_91241.1	chr10	22306327	22306527	-	1	NA	NA	NA	-293	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.015000	0.512438	
mm_25697.1	chr3	122274293	122274493	+	1	NA	NA	NA	-21	NM_153806	99480	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	0.090000	0.616915	
mm_11676.1	chr2	35426447	35426647	+	1	NA	NA	NA	-29373	NM_001272040	74854	Mm.159338	NM_001080709	ENSMUSG00000079421	4930402F06Rik	-	RIKEN cDNA 4930402F06 gene	protein-coding	0.000000	0.482587	
mm_170889.1	chr2	24178410	24178610	+	1	NA	NA	NA	-7966	NM_153511	215257	Mm.249379	NM_153511	ENSMUSG00000044103	Il1f9	Il36g	interleukin 1 family, member 9	protein-coding	0.045000	0.492537	
mm_119702.1	chr14	53763061	53763261	+	1	NA	NA	NA	490768	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.502488	
mm_170888.1	chr2	23068108	23068308	+	1	NA	NA	NA	7	NM_001102436	74159	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.080000	0.611940	
mm_6281.1	chr1	69683281	69683481	-	1	NA	NA	NA	2579	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.020000	0.363184	-64(CTCTTTAAAAAA,-,0.00)
mm_65605.1	chr7	27396454	27396654	-	1	NA	NA	NA	-1	NM_001199236	80297	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0.180000	0.830846	
mm_98632.1	chr11	96096869	96097069	+	1	NA	NA	NA	14993	NM_001271018	76815	Mm.296049	NM_029755	ENSMUSG00000006056	Calcoco2	2410154J16Rik|C77254|Ndp52|Ndp52l1	calcium binding and coiled-coil domain 2	protein-coding	0.005000	0.462687	
mm_84005.1	chr9	57620669	57620869	-	1	NA	NA	NA	5	NM_199222	235416	Mm.295630	NM_199222	ENSMUSG00000056271	Lman1l	BC020188|slamp	lectin, mannose-binding 1 like	protein-coding	0.025000	0.567164	
mm_125677.1	chr15	66603986	66604186	+	1	NA	NA	NA	26514	NM_001081409	239510	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	0.015000	0.412935	
mm_143688.1	chr17	80207204	80207404	-	1	NA	NA	NA	1	NM_001195486	225027	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0.105000	0.606965	-33(GCCTATATAAGC,-,0.00)
mm_80967.1	chr9	103111864	103112064	+	1	NA	NA	NA	-110	NM_173781	270192	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.165000	0.805970	
mm_26755.1	chr3	8022743	8022943	-	1	NA	NA	NA	-67956	NR_040587	75476	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	0.010000	0.492537	
mm_22092.1	chr2	168932467	168932667	-	1	NA	NA	NA	23020	NM_009564	22722	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	0.010000	0.437811	
mm_144735.1	chr18	35562168	35562368	+	1	NA	NA	NA	110	NM_010771	17184	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0.090000	0.666667	
mm_119308.1	chr14	35057079	35057279	+	1	NA	NA	NA	162570	NR_029774	723847		NR_029774	ENSMUSG00000065481	Mir346	Mirn346|mir-346|mmu-mir-346	microRNA 346	ncRNA	0.000000	0.363184	
mm_63372.1	chr7	127196090	127196290	+	1	NA	NA	NA	-113	NM_027353	70233	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0.065000	0.562189	
mm_45195.1	chr5	52192095	52192295	-	1	NA	NA	NA	1514	NR_015537	414108	Mm.383512	NR_015537	ENSMUSG00000097145	9230114K14Rik	-	RIKEN cDNA 9230114K14 gene	ncRNA	0.010000	0.472637	-26(GCATATAAAAAC,-,0.00),48(CCATTAATACAC,+,0.00)
mm_154818.1	chrX	15925993	15926193	+	1	NA	NA	NA	-596776	NM_001310461	66742	Mm.45302	NM_025738	ENSMUSG00000023257	Cypt1	4931420D14Rik|Ckt1r3|Cypt5|Cypt6|TISP55	cysteine-rich perinuclear theca 1	protein-coding	0.000000	0.358209	
mm_168160.1	chr10	4353362	4353562	+	1	NA	NA	NA	34646	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.050000	0.512438	
mm_5138.1	chr1	9721379	9721579	-	1	NA	NA	NA	-21270	NM_008651	17864	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	0.000000	0.338308	-27(TCTTAAATAGGG,+,0.00)
mm_95987.1	chr11	58999265	58999465	+	1	NA	NA	NA	21272	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.040000	0.681592	
mm_90197.1	chr10	120226956	120227156	+	1	NA	NA	NA	-4	NM_025431	66225	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.085000	0.636816	
mm_163084.1	chr11	69368762	69368962	+	1	NA	NA	NA	564	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.155000	0.761194	
mm_131128.1	chr16	5885191	5885391	+	1	NA	NA	NA	498	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.080000	0.661692	
mm_138795.1	chr17	37525760	37525960	+	1	NA	NA	NA	-4097	NM_001005485	545205	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	0.000000	0.432836	71(GCTCTTAGAGTC,+,0.00)
mm_17482.1	chr2	28562317	28562517	-	1	NA	NA	NA	986	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.015000	0.537313	
mm_21573.1	chr2	164237019	164237219	-	1	NA	NA	NA	1222	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.015000	0.398010	
mm_58284.1	chr6	145863061	145863261	-	1	NA	NA	NA	2259	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.130000	0.726368	
mm_56763.1	chr6	116131767	116131967	-	1	NA	NA	NA	61507	NM_177412	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.005000	0.417910	
mm_5452.1	chr1	36267899	36268099	-	1	NA	NA	NA	5426	NM_153408	214854	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.015000	0.477612	
mm_144891.1	chr18	36945989	36946189	+	1	NA	NA	NA	-118	NM_138662	192163	Mm.308500	NM_138662	ENSMUSG00000102312	Pcdha3	mKIAA0345	protocadherin alpha 3	protein-coding	0.030000	0.378109	
mm_95417.1	chr11	50071113	50071313	+	1	NA	NA	NA	1511	NR_029769	723845		NR_029769	ENSMUSG00000065417	Mir340	Mirn340|mir-340|mmu-mir-340	microRNA 340	ncRNA	0.020000	0.388060	
mm_2558.1	chr1	112785446	112785646	+	1	NA	NA	NA	-920628	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0.005000	0.432836	-62(AGGCTTAAAAGC,-,0.00),-32(CTCTATATAAAC,-,0.00)
mm_101451.1	chr11	30198147	30198347	-	1	NA	NA	NA	10	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.040000	0.517413	
mm_70176.1	chr7	143685772	143685972	-	1	NA	NA	NA	3	NM_001308111	79201	Mm.290780	NM_024290	ENSMUSG00000037613	Tnfrsf23	SOB|TNFRSFH23|Tnfrh1|Tnfrsf1al1|mDcTRAILR1|mSOB	tumor necrosis factor receptor superfamily, member 23	protein-coding	0.030000	0.542289	
mm_8155.1	chr1	136942204	136942404	-	1	NA	NA	NA	11326	NM_001159769	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	0.005000	0.308458	35(CTCTTTTAAGGG,-,0.00),36(TCTTTTAAGGGG,+,0.00)
mm_21853.1	chr2	165879424	165879624	-	1	NA	NA	NA	-1087	NM_001291158	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.025000	0.477612	
mm_63850.1	chr7	135653875	135654075	+	1	NA	NA	NA	-1661	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.045000	0.587065	
mm_6959.1	chr1	86110655	86110855	-	1	NA	NA	NA	1215	NM_008311	15559	Mm.439747	NM_008311	ENSMUSG00000026228	Htr2b	5-HT2B|AJ012488|AV377389	5-hydroxytryptamine (serotonin) receptor 2B	protein-coding	0.015000	0.487562	
mm_132704.1	chr16	43363904	43364104	+	1	NA	NA	NA	56192	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.005000	0.462687	
mm_84008.1	chr9	57645031	57645231	-	1	NA	NA	NA	522	NM_007783	12988	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.050000	0.696517	
mm_113167.1	chr13	24813325	24813525	+	1	NA	NA	NA	11768	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.025000	0.442786	15(GCATTTATACAC,+,0.00)
mm_46429.1	chr5	104440418	104440618	-	1	NA	NA	NA	4326	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.020000	0.447761	
mm_51414.1	chr6	78381740	78381940	+	1	NA	NA	NA	1131	NM_011259	19694	Mm.2552	NM_011259	ENSMUSG00000079516	Reg3a	AV063448	regenerating islet-derived 3 alpha	protein-coding	0.010000	0.477612	-34(TCCTTTATAAAC,-,0.00)
mm_108664.1	chr12	86470041	86470241	+	1	NA	NA	NA	48497	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.075000	0.606965	
mm_170250.1	chr1	80587955	80588155	-	1	NA	NA	NA	77297	NM_001285927	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.000000	0.492537	
mm_128426.1	chr15	48792065	48792265	-	1	NA	NA	NA	-176	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0.020000	0.427861	-10(GCTTTTAGAAGC,+,0.00)
mm_129407.1	chr15	78296915	78297115	-	1	NA	NA	NA	8706	NM_007781	12984	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	0.010000	0.542289	
mm_15218.1	chr2	154426941	154427141	+	1	NA	NA	NA	-9443	NM_172860	12396	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	0.020000	0.417910	
mm_18058.1	chr2	39226323	39226523	-	1	NA	NA	NA	-85	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding	0.090000	0.557214	
mm_155621.1	chrX	83588391	83588591	+	1	NA	NA	NA	-100567	NM_021898	100502723	Mm.383210	NM_021898	ENSMUSG00000035522	Tsga8	Halap-X|Halapx	testis specific gene A8	protein-coding	0.000000	0.437811	
mm_59246.1	chr7	24784502	24784702	+	1	NA	NA	NA	7398	NM_007675	26366	Mm.30300	NM_007675	ENSMUSG00000054169	Ceacam10	Bgp3|Cea10	carcinoembryonic antigen-related cell adhesion molecule 10	protein-coding	0.025000	0.472637	
mm_154414.1	chrM	15426	15626	+	1	NA	NA	NA	NA	NA									0.005000	0.253731	
mm_48481.1	chr5	141230198	141230398	-	1	NA	NA	NA	-11236	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	0.035000	0.487562	
mm_14764.1	chr2	145186312	145186512	+	1	NA	NA	NA	-56199	NM_053195	94249	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.005000	0.398010	
mm_156439.1	chrX	142227837	142228037	+	1	NA	NA	NA	0	NM_001161430	237082	Mm.41899	NM_172782	ENSMUSG00000042271	Nxt2	6330587F24Rik|AI787442|P15-2	nuclear transport factor 2-like export factor 2	protein-coding	0.025000	0.467662	
mm_33768.1	chr4	134401567	134401767	+	1	NA	NA	NA	-1245	NM_001285874	100163	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	0.020000	0.527363	
mm_15087.1	chr2	153240836	153241036	+	1	NA	NA	NA	422	NM_018807	54711	Mm.103199	NM_018807	ENSMUSG00000051413	Plagl2	AU018672|AW552839|mKIAA0198	pleiomorphic adenoma gene-like 2	protein-coding	0.035000	0.587065	
mm_62803.1	chr7	112856534	112856734	+	1	NA	NA	NA	97250	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.020000	0.492537	
mm_95049.1	chr11	32297043	32297243	+	1	NA	NA	NA	651	NM_001083955	110257	Mm.196110	NM_001083955	ENSMUSG00000069917	Hba-a2	-	hemoglobin alpha, adult chain 2	protein-coding	0.035000	0.606965	
mm_154982.1	chrX	38121082	38121282	+	1	NA	NA	NA	342	NM_001185002	73614	Mm.50505	NM_001185002	ENSMUSG00000050197	Rhox13	1700123J19Rik	reproductive homeobox 13	protein-coding	0.080000	0.587065	
mm_68920.1	chr7	126463008	126463208	-	1	NA	NA	NA	-35	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.015000	0.636816	-32(CCTCATAAGGAC,+,0.00)
mm_117093.1	chr13	59822475	59822675	-	1	NA	NA	NA	572	NM_153538	214290	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.065000	0.572139	37(GGGTTGAAAAGC,-,0.00)
mm_31851.1	chr4	75278254	75278454	+	1	NA	NA	NA	-68	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.065000	0.572139	
mm_39.1	chr1	6475139	6475339	+	1	NA	NA	NA	-11992	NM_001244693	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.388060	
mm_69340.1	chr7	129657865	129658065	-	1	NA	NA	NA	66102	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.020000	0.467662	-27(GTTTTTATGGTG,+,0.00)
mm_142848.1	chr17	51797504	51797704	-	1	NA	NA	NA	14450	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.000000	0.338308	
mm_60796.1	chr7	45617493	45617693	+	1	NA	NA	NA	-13	NM_001271981	14343	Mm.56933	NM_008051	ENSMUSG00000008461	Fut1	-	fucosyltransferase 1	protein-coding	0.050000	0.611940	
mm_25304.1	chr3	105984991	105985191	+	1	NA	NA	NA	11289	NM_007696	12659	Mm.431947	NM_007696	ENSMUSG00000074340	Ovgp1	120kDa|AU016433|AU019448|Chit5|MOGP|OGP|muc9	oviductal glycoprotein 1	protein-coding	0.010000	0.467662	
mm_67490.1	chr7	80726670	80726870	-	1	NA	NA	NA	-37893	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.030000	0.487562	
mm_20850.1	chr2	148046970	148047170	-	1	NA	NA	NA	-101	NM_010446	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.030000	0.532338	
mm_83861.1	chr9	54661798	54661998	-	1	NA	NA	NA	-13	NM_053178	94180	Mm.20592	NM_053178	ENSMUSG00000032281	Acsbg1	BG1|Bgm|E230019G03Rik|GR-LACS|Lpd|R75185	acyl-CoA synthetase bubblegum family member 1	protein-coding	0.005000	0.442786	
mm_60994.1	chr7	49275974	49276174	+	1	NA	NA	NA	29885	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.005000	0.592040	
mm_61581.1	chr7	79842471	79842671	+	1	NA	NA	NA	-219	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.015000	0.616915	
mm_85940.1	chr9	112099184	112099384	-	1	NA	NA	NA	19427	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.000000	0.407960	
mm_123981.1	chr14	75327956	75328156	-	1	NA	NA	NA	43683	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0.070000	0.567164	
mm_125071.1	chr15	25971810	25972010	+	1	NA	NA	NA	-12456	NM_144523	52521	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.020000	0.557214	
mm_51743.1	chr6	87375659	87375859	+	1	NA	NA	NA	2394	NM_025467	66284	Mm.46446	NM_025467	ENSMUSG00000030049	Gkn2	1810036H07Rik|Bricd1b	gastrokine 2	protein-coding	0.015000	0.417910	
mm_166915.1	chr7	30394727	30394927	+	1	NA	NA	NA	-18961	NM_011662	22177	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0.015000	0.537313	
mm_3767.1	chr1	156303407	156303607	+	1	NA	NA	NA	99	NM_001277730	214575	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	0.160000	0.741294	
mm_102503.1	chr11	60722565	60722765	-	1	NA	NA	NA	4598	NM_022009	14248	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	0.040000	0.552239	
mm_69706.1	chr7	140082465	140082665	-	1	NA	NA	NA	-17	NM_026769	68566	Mm.44241	NM_026769	ENSMUSG00000025468	Caly	0710001P07Rik|1110004A22Rik|Calcyon|Drd1ip	calcyon neuron-specific vesicular protein	protein-coding	0.045000	0.651741	
mm_62153.1	chr7	97133740	97133940	+	1	NA	NA	NA	52089	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.000000	0.378109	
mm_86554.1	chr10	10750993	10751193	+	1	NA	NA	NA	47	NR_046010	78056	Mm.271285	NR_046010		4930567K20Rik	1700038H22Rik	RIKEN cDNA 4930567K20 gene	ncRNA	0.000000	0.437811	
mm_50077.1	chr6	41354078	41354278	+	1	NA	NA	NA	73	NM_001038996	436522	Mm.443385	NM_001038996	ENSMUSG00000071521	Try10	-	trypsin 10	protein-coding	0.005000	0.507463	-33(GGGTATAAAGGC,-,0.00)
mm_13854.1	chr2	119692070	119692270	+	1	NA	NA	NA	17102	NM_030112	76246	Mm.33437	NM_030112	ENSMUSG00000027304	Rtf1	2900005O08Rik|6530416A09Rik|AI853581|AU043144|AW553985|Gtl7|cbp82	RTF1, Paf1/RNA polymerase II complex component	protein-coding	0.035000	0.532338	
mm_64345.1	chr7	142380758	142380958	+	1	NA	NA	NA	7012	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.015000	0.482587	
mm_136059.1	chr16	80383905	80384105	-	1	NA	NA	NA	-816692	NM_001113208	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.005000	0.273632	
mm_28103.1	chr3	86547967	86548167	-	1	NA	NA	NA	216	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.030000	0.427861	
mm_15229.1	chr2	154548930	154549130	+	1	NA	NA	NA	126	NM_029305	75480	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0.010000	0.537313	
mm_115479.1	chr13	3140058	3140258	-	1	NA	NA	NA	-9317	NR_001581	73266	Mm.335891	NR_001581		Speer6-ps1	1700039A02Rik|SPEER-6	spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1	pseudo	0.045000	0.417910	
mm_143725.1	chr17	81378827	81379027	-	1	NA	NA	NA	-313842	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.005000	0.348259	
mm_155802.1	chrX	99042541	99042741	+	1	NA	NA	NA	60	NM_199018	236920	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	0.070000	0.597015	
mm_145632.1	chr18	61111162	61111362	+	1	NA	NA	NA	5690	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.025000	0.522388	
mm_24975.1	chr3	96795828	96796028	+	1	NA	NA	NA	18593	NM_018767	54215	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	0.025000	0.517413	
mm_50516.1	chr6	49040270	49040470	+	1	NA	NA	NA	3852	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.015000	0.447761	
mm_143515.1	chr17	72976347	72976547	-	1	NA	NA	NA	58142	NM_029999	77889	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.015000	0.482587	-35(CACTATAAATAC,-,0.00)
mm_86088.1	chr9	114933516	114933716	-	1	NA	NA	NA	371	NM_175380	333433	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	0.100000	0.711443	
mm_34643.1	chr4	150705111	150705311	+	1	NA	NA	NA	-53037	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.020000	0.517413	-32(GTATTTAAAGGC,+,0.00)
mm_43448.1	chr5	136116609	136116809	+	1	NA	NA	NA	18	NM_011293	20022	Mm.4896	NM_011293	ENSMUSG00000039771	Polr2j	14.5kDa|Polr2i|Rpb11a|Rpo2-4	polymerase (RNA) II (DNA directed) polypeptide J	protein-coding	0.100000	0.631841	
mm_67522.1	chr7	80947439	80947639	-	1	NA	NA	NA	11	NM_019951	56529	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	0.060000	0.601990	
mm_28843.1	chr3	96629708	96629908	-	1	NA	NA	NA	11	NR_003619	229613	Mm.445135	NM_175469	ENSMUSG00000045327	6330549D23Rik	-	RIKEN cDNA 6330549D23 gene	pseudo	0.070000	0.527363	
mm_3134.1	chr1	135131149	135131349	+	1	NA	NA	NA	1326	NM_007955	13924	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP|mOST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	0.020000	0.597015	
mm_119198.1	chr14	32685594	32685794	+	1	NA	NA	NA	-422	NM_001195097	100504518	Mm.318319	NM_001195097	ENSMUSG00000071540	3425401B19Rik	-	RIKEN cDNA 3425401B19 gene	protein-coding	0.020000	0.507463	
mm_80920.1	chr9	101034778	101034978	+	1	NA	NA	NA	6	NM_001311149	66904	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0.105000	0.577114	
mm_117016.1	chr13	58126954	58127154	-	1	NA	NA	NA	1502	NM_029872	77134	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	0.025000	0.477612	
mm_90257.1	chr10	122448441	122448641	+	1	NA	NA	NA	42	NM_016847	54140	Mm.4351	NM_016847	ENSMUSG00000020123	Avpr1a	AVPR|Avpr1|V1a|V1aR	arginine vasopressin receptor 1A	protein-coding	0.030000	0.567164	
mm_169135.1	chr13	59477783	59477983	-	1	NA	NA	NA	66568	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.025000	0.552239	
mm_84347.1	chr9	64253491	64253691	-	1	NA	NA	NA	14	NM_008927	26395	Mm.248907	NM_008927	ENSMUSG00000004936	Map2k1	MAPKK1|MEKK1|Mek1|Prkmk1	mitogen-activated protein kinase kinase 1	protein-coding	0.095000	0.726368	
mm_110202.1	chr12	27341026	27341226	-	1	NA	NA	NA	1592	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.030000	0.437811	
mm_41707.1	chr5	101765033	101765233	+	1	NA	NA	NA	3	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.165000	0.825871	
mm_129731.1	chr15	82047454	82047654	-	1	NA	NA	NA	44	NM_011482	20826	Mm.299312	NM_011482	ENSMUSG00000063480	Nhp2l1	FA-1|Fta1|Snu13|Ssfa1	NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	protein-coding	0.135000	0.666667	
mm_84187.1	chr9	60193596	60193796	-	1	NA	NA	NA	-52476	NM_172444	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.010000	0.427861	
mm_128410.1	chr15	44748269	44748469	-	1	NA	NA	NA	303	NM_001285840	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding	0.090000	0.706468	
mm_36159.1	chr4	59914856	59915056	-	1	NA	NA	NA	100	NM_021053	30936	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0.035000	0.601990	
mm_65343.1	chr7	24987976	24988176	-	1	NA	NA	NA	-409	NR_106014	102465634		NR_106014	ENSMUSG00000099258	Mir7047	Gm27270|mmu-mir-7047	microRNA 7047	ncRNA	0.040000	0.577114	
mm_117283.1	chr13	65557600	65557800	-	1	NA	NA	NA	278846	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.015000	0.527363	
mm_69897.1	chr7	141637921	141638121	-	1	NA	NA	NA	17298	NM_001330001	353328	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0.005000	0.522388	
mm_55539.1	chr6	70791907	70792107	-	1	NA	NA	NA	168	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.125000	0.756219	
mm_8345.1	chr1	150197067	150197267	-	1	NA	NA	NA	-32219	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.000000	0.482587	
mm_99633.1	chr11	105178668	105178868	+	1	NA	NA	NA	-39	NM_001294331	24086	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	0.005000	0.462687	
mm_75.1	chr1	6707770	6707970	+	1	NA	NA	NA	-22181	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.258706	-96(CCTTTAATGTTC,+,0.00)
mm_17073.1	chr2	22745027	22745227	-	1	NA	NA	NA	-29200	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.045000	0.567164	
mm_135143.1	chr16	35856125	35856325	-	1	NA	NA	NA	15157	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.020000	0.542289	
mm_26298.1	chr3	142507862	142508062	+	1	NA	NA	NA	11028	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.025000	0.487562	
mm_75860.1	chr8	70700354	70700554	-	1	NA	NA	NA	2715	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.045000	0.482587	
mm_61893.1	chr7	90023312	90023512	+	1	NA	NA	NA	-5747	NR_110365	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	0.005000	0.343284	36(GTTTTTAAAGAA,+,0.00)
mm_145158.1	chr18	46597632	46597832	+	1	NA	NA	NA	28	NM_010120	13664	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.120000	0.711443	
mm_58566.1	chr7	4788842	4789042	+	1	NA	NA	NA	618	NM_029384	664968	Mm.292837	NM_029384	ENSMUSG00000030431	Tmem238	2210411K11Rik	transmembrane protein 238	protein-coding	0.045000	0.601990	
mm_139896.1	chr17	70852637	70852837	+	1	NA	NA	NA	795	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.030000	0.552239	
mm_153467.1	chr19	41264218	41264418	-	1	NA	NA	NA	-314	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.065000	0.537313	
mm_49530.1	chr6	30065421	30065621	+	1	NA	NA	NA	-10800	NM_001164229	18181	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	0.005000	0.323383	
mm_120112.1	chr14	59478794	59478994	+	1	NA	NA	NA	37913	NM_026908	69008	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding	0.015000	0.457711	
mm_19063.1	chr2	77519443	77519643	-	1	NA	NA	NA	123	NM_001113400	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.055000	0.512438	
mm_112967.1	chr13	21242502	21242702	+	1	NA	NA	NA	50084	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.020000	0.437811	
mm_75697.1	chr8	68212028	68212228	-	1	NA	NA	NA	-64400	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.005000	0.398010	-39(TGCTTTTTAAAG,-,0.00),-37(CTTTTTAAAGAA,+,0.00)
mm_164185.1	chr15	76671622	76671822	+	1	NA	NA	NA	42	NM_033371	73062	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	0.115000	0.746269	
mm_102879.1	chr11	69410314	69410514	-	1	NA	NA	NA	3261	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.035000	0.552239	
mm_17973.1	chr2	37647114	37647314	-	1	NA	NA	NA	71	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding	0.010000	0.373134	
mm_167447.1	chr8	121805405	121805605	+	1	NA	NA	NA	24064	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.005000	0.517413	
mm_41053.1	chr5	86804145	86804345	+	1	NA	NA	NA	-21	NM_001347375	231386	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.100000	0.651741	
mm_170956.1	chr2	5379271	5379471	-	1	NA	NA	NA	-19	NR_030601	100124465		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.050000	0.502488	
mm_24598.1	chr3	93445245	93445445	+	1	NA	NA	NA	3015	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.075000	0.582090	
mm_157563.1	chrX	52272583	52272783	-	1	NA	NA	NA	105498	NR_105805	102465202		NR_105805	ENSMUSG00000105738	Mir6384	mmu-mir-6384	microRNA 6384	ncRNA	0.020000	0.417910	-4(TCTTTTATGCCT,+,0.00)
mm_82916.1	chr9	35055564	35055764	-	1	NA	NA	NA	-61064	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.020000	0.572139	
mm_85358.1	chr9	103215787	103215987	-	1	NA	NA	NA	-13822	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.015000	0.457711	
mm_161068.1	chr12	76369551	76369751	-	1	NA	NA	NA	-91	NM_028356	109929	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0.165000	0.786070	
mm_59250.1	chr7	24818692	24818892	+	1	NA	NA	NA	-3	NR_045096	545936	Mm.376228	NR_045096	ENSMUSG00000011350	Gm5893	EG545936|Gm477	predicted gene 5893	pseudo	0.015000	0.597015	
mm_54379.1	chr6	31210959	31211159	-	1	NA	NA	NA	7415	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.000000	0.398010	
mm_61968.1	chr7	90442720	90442920	+	1	NA	NA	NA	39	NR_073438	233490	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	0.120000	0.716418	
mm_112366.1	chr12	119160747	119160947	-	1	NA	NA	NA	77429	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.000000	0.283582	
mm_138659.1	chr17	35868485	35868685	+	1	NA	NA	NA	1970	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.030000	0.656716	
mm_146910.1	chr18	31317193	31317393	-	1	NA	NA	NA	-165	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding	0.020000	0.477612	
mm_74162.1	chr8	123403458	123403658	+	1	NA	NA	NA	-3524	NM_008559	17199	Mm.324942	NM_008559	ENSMUSG00000074037	Mc1r	Mcr1|Mshra|Tob|e	melanocortin 1 receptor	protein-coding	0.025000	0.557214	
mm_60298.1	chr7	44016046	44016246	+	1	NA	NA	NA	3449	NM_010115	13647	Mm.439663	NM_010115		Egfbp2	Egfbp-2|Klk1b26|mGk-13	epidermal growth factor binding protein type B	protein-coding	0.015000	0.582090	
mm_62850.1	chr7	114415136	114415336	+	1	NA	NA	NA	-18	NM_011055	18576	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0.175000	0.781095	
mm_75884.1	chr8	70804889	70805089	-	1	NA	NA	NA	-3460	NM_008353	16161	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	0.090000	0.726368	
mm_7423.1	chr1	119648842	119649042	-	1	NA	NA	NA	58	NM_001113416	226352	Mm.253156	NM_145506	ENSMUSG00000026383	Epb41l5	1700030C16Rik|AL022914|BE37|E230025E14Rik|Epb4.1l5|Lulu1|NBL5	erythrocyte membrane protein band 4.1 like 5	protein-coding	0.095000	0.691542	-91(GCCCCTTTAAGA,-,0.00),-89(CCCTTTAAGAGC,+,0.00),-89(CCCTTTAAGAGC,-,0.00),-88(CCTTTAAGAGCG,+,0.00),-41(GGGCTTTAAGGG,-,0.00),-40(GGCTTTAAGGGG,-,0.00),-39(GCTTTAAGGGGC,+,0.00)
mm_31565.1	chr4	57568029	57568229	+	1	NA	NA	NA	-119	NM_001304544	677884	Mm.331630	NM_001304544	ENSMUSG00000089945	Pakap	AF064781|Gm20459|Palm2-Akap2|Palm2Akap2|Palm2akap2	paralemmin A kinase anchor protein	protein-coding	0.135000	0.771144	
mm_113977.1	chr13	51837711	51837911	+	1	NA	NA	NA	-8864	NM_011817	23882	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.005000	0.393035	
mm_145805.1	chr18	65382601	65382801	+	1	NA	NA	NA	11187	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.005000	0.358209	
mm_48819.1	chr5	149050500	149050700	-	1	NA	NA	NA	1016	NM_001313894	15289	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.015000	0.462687	
mm_83900.1	chr9	56155763	56155963	-	1	NA	NA	NA	5207	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.015000	0.417910	
mm_97736.1	chr11	80429638	80429838	+	1	NA	NA	NA	1123	NM_178616	69077	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	0.005000	0.407960	
mm_5161.1	chr1	10037789	10037989	-	1	NA	NA	NA	270	NR_102282	26754	Mm.402384	NM_013715	ENSMUSG00000025917	Cops5	AI303502|CSN5|Jab1|Mov34|Sgn5	COP9 signalosome subunit 5	protein-coding	0.055000	0.601990	
mm_60355.1	chr7	44384635	44384835	+	1	NA	NA	NA	609	NM_016663	20981	Mm.4824	NM_016663	ENSMUSG00000030731	Syt3	AI385753|sytIII	synaptotagmin III	protein-coding	0.040000	0.597015	
mm_48677.1	chr5	146209564	146209764	-	1	NA	NA	NA	11237	NM_001256087	74132	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	0.010000	0.378109	
mm_106306.1	chr11	118290128	118290328	-	1	NA	NA	NA	16	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.095000	0.636816	-15(GCCTCTTAAGGC,-,0.00),-14(CCTCTTAAGGCG,+,0.00)
mm_86137.1	chr9	116673187	116673387	-	1	NA	NA	NA	-497924	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.000000	0.283582	
mm_70208.1	chr7	144778834	144779034	-	1	NA	NA	NA	-40342	NM_001242349	101772	Mm.26700	NM_178642	ENSMUSG00000031075	Ano1	Tmem16a	anoctamin 1, calcium activated chloride channel	protein-coding	0.010000	0.527363	
mm_154220.1	chr19	59458159	59458359	-	1	NA	NA	NA	376	NR_002863	329078	Mm.80382	NR_002863	ENSMUSG00000087095	Emx2os	-	Emx2 opposite strand/antisense transcript (non-protein coding)	ncRNA	0.065000	0.661692	
mm_82964.1	chr9	35648075	35648275	-	1	NA	NA	NA	27	NM_001167592	100312956	Mm.475850	NM_001167592	ENSMUSG00000094995	Pate3	Gm17365|Pate-dj	prostate and testis expressed 3	protein-coding	0.000000	0.457711	
mm_60513.1	chr7	44479619	44479819	+	1	NA	NA	NA	-4798	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.507463	
mm_119522.1	chr14	47494112	47494312	+	1	NA	NA	NA	21651	NM_001146085	78938	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	0.005000	0.477612	
mm_126259.1	chr15	79089518	79089718	+	1	NA	NA	NA	14395	NM_145139	223691	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	0.045000	0.562189	
mm_1788.1	chr1	78657782	78657982	+	1	NA	NA	NA	57	NM_001001981	195434	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0.155000	0.751244	
mm_164002.1	chr14	65980882	65981082	+	1	NA	NA	NA	12499	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.030000	0.542289	
mm_77687.1	chr8	126537270	126537470	-	1	NA	NA	NA	56066	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.005000	0.492537	
mm_13534.1	chr2	110600609	110600809	+	1	NA	NA	NA	3410	NM_001177624	241612	Mm.277148	NM_001003915	ENSMUSG00000041644	Slc5a12	AI315119|D630015G19|SMCT2	solute carrier family 5 (sodium/glucose cotransporter), member 12	protein-coding	0.000000	0.328358	
mm_21506.1	chr2	163623172	163623372	-	1	NA	NA	NA	16060	NM_001305803	76080	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.005000	0.298507	
mm_54118.1	chr6	18030348	18030548	-	1	NA	NA	NA	-3	NM_023653	22413	Mm.33653	NM_023653	ENSMUSG00000010797	Wnt2	2610510E18Rik|Int1l1|Irp|Mirp|Wnt-2|Wnt2a	wingless-type MMTV integration site family, member 2	protein-coding	0.110000	0.691542	
mm_8783.1	chr1	161250797	161250997	-	1	NA	NA	NA	313	NR_130150	11758	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	0.110000	0.711443	
mm_27690.1	chr3	66088158	66088358	-	1	NA	NA	NA	-130033	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.005000	0.422886	
mm_143594.1	chr17	74527984	74528184	-	1	NA	NA	NA	-211	NM_007566	12211	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.095000	0.651741	
mm_19392.1	chr2	91444578	91444778	-	1	NA	NA	NA	-36	NM_175123	228356	Mm.386861	NM_175123	ENSMUSG00000040591	1110051M20Rik	AI586322	RIKEN cDNA 1110051M20 gene	protein-coding	0.055000	0.567164	
mm_8369.1	chr1	150724647	150724847	-	1	NA	NA	NA	-258582	NM_001110146	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.000000	0.318408	
mm_58220.1	chr6	144209344	144209544	-	1	NA	NA	NA	124	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.015000	0.522388	
mm_87197.1	chr10	39532901	39533101	+	1	NA	NA	NA	-79933	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.030000	0.492537	
mm_150692.1	chr19	42147343	42147543	+	1	NA	NA	NA	54	NM_183195	277010	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0.070000	0.661692	
mm_167414.1	chr8	107373124	107373324	+	1	NA	NA	NA	29981	NM_008706	18104	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	0.015000	0.393035	14(GAGTATTTAAGC,-,0.00)
mm_78528.1	chr9	34686697	34686897	+	1	NA	NA	NA	198066	NM_001190911	67703	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kin of IRRE like 3 (Drosophila)	protein-coding	0.010000	0.427861	
mm_7882.1	chr1	133025261	133025461	-	1	NA	NA	NA	55	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	0.050000	0.611940	
mm_170782.1	chr2	172557908	172558108	-	1	NA	NA	NA	7017	NM_001159696	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding	0.000000	0.358209	19(TTCCTTAAAAAC,-,0.00),21(CCTTAAAAACAG,+,0.00)
mm_32297.1	chr4	103119310	103119510	+	1	NA	NA	NA	20	NM_001039081	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.175000	0.800995	
mm_3041.1	chr1	134040228	134040428	+	1	NA	NA	NA	2813	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.015000	0.577114	
mm_14347.1	chr2	129593329	129593529	+	1	NA	NA	NA	260	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.110000	0.756219	
mm_134946.1	chr16	31275320	31275520	-	1	NA	NA	NA	-143	NM_025800	66849	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	0.040000	0.572139	
mm_10660.1	chr2	20737191	20737391	+	1	NA	NA	NA	217778	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.025000	0.462687	
mm_98864.1	chr11	97766743	97766943	+	1	NA	NA	NA	-230	NM_026186	67480	Mm.33206	NM_026186	ENSMUSG00000018541	Cwc25	1300013D05Rik|AA473636|Ccdc49|R75228	CWC25 spliceosome-associated protein	protein-coding	0.040000	0.527363	
mm_51842.1	chr6	90302431	90302631	+	1	NA	NA	NA	1261	NM_177738	243535	Mm.233854	NM_177738	ENSMUSG00000049694	BC048671	-	cDNA sequence BC048671	protein-coding	0.000000	0.482587	
mm_94910.1	chr11	29374282	29374482	+	1	NA	NA	NA	210	NM_176841	108686	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0.025000	0.497512	
mm_121765.1	chr14	19823720	19823920	-	1	NA	NA	NA	3	NM_026528	68045	Mm.21932	NM_026528	ENSMUSG00000021807	2700060E02Rik	-	RIKEN cDNA 2700060E02 gene	protein-coding	0.160000	0.746269	
mm_152181.1	chr19	7426439	7426639	-	1	NA	NA	NA	3966	NR_105957	102466781		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	0.000000	0.472637	
mm_165375.1	chr2	128319127	128319327	+	1	NA	NA	NA	110124	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.005000	0.437811	49(TTCTTTTAAAGA,-,0.00),50(TCTTTTAAAGAT,+,0.00)
mm_83073.1	chr9	37657131	37657331	-	1	NA	NA	NA	81	NM_025289	21376	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	0.090000	0.616915	
mm_90941.1	chr10	12963769	12963969	-	1	NA	NA	NA	390	NM_029075	74732	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.015000	0.303483	
mm_144287.1	chr18	12128675	12128875	+	1	NA	NA	NA	-75	NM_024182	66878	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	0.095000	0.646766	
mm_21488.1	chr2	163089506	163089706	-	1	NA	NA	NA	-5	NM_026630	68236	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	0.010000	0.527363	
mm_92388.1	chr10	76596069	76596269	-	1	NA	NA	NA	20521	NM_080845	14317	Mm.36278	NM_080845	ENSMUSG00000001155	Ftcd	-	formiminotransferase cyclodeaminase	protein-coding	0.025000	0.547264	
mm_34726.1	chr4	152178009	152178209	+	1	NA	NA	NA	9	NM_133348	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.130000	0.791045	
mm_81673.1	chr9	111035644	111035844	+	1	NA	NA	NA	16452	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.010000	0.358209	
mm_113932.1	chr13	49622873	49623073	+	1	NA	NA	NA	14902	NM_008760	18295	Mm.4258	NM_008760	ENSMUSG00000021390	Ogn	3110079A16Rik|OG|OIF|SLRR3A|mimecan|mimican	osteoglycin	protein-coding	0.020000	0.402985	-26(CTGCTTAAAAAG,-,0.00),-24(GCTTAAAAAGAT,+,0.00)
mm_141933.1	chr17	35046354	35046554	-	1	NA	NA	NA	168	NM_013600	17687	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	0.055000	0.631841	
mm_130044.1	chr15	89123042	89123242	-	1	NA	NA	NA	8	NM_001163319	328580	Mm.380934	NM_001163319	ENSMUSG00000051786	Tubgcp6	AI843275|D430023H11|GCP-6|mKIAA1669	tubulin, gamma complex associated protein 6	protein-coding	0.100000	0.651741	
mm_134532.1	chr16	19241711	19241911	-	1	NA	NA	NA	44930	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.000000	0.437811	
mm_82783.1	chr9	28995959	28996159	-	1	NA	NA	NA	967070	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.020000	0.442786	
mm_9722.1	chr1	180027350	180027550	-	1	NA	NA	NA	66361	NM_001033285	226751	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	0.015000	0.378109	
mm_134350.1	chr16	16571429	16571629	-	1	NA	NA	NA	-11310	NM_139232	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.015000	0.427861	
mm_4110.1	chr1	167598611	167598811	+	1	NA	NA	NA	349	NM_009107	20183	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0.025000	0.522388	
mm_6304.1	chr1	71414798	71414998	-	1	NA	NA	NA	12	NM_175210	74591	Mm.159251	NM_175210	ENSMUSG00000050296	Abca12	4832428G11Rik|4833417A11Rik	ATP-binding cassette, sub-family A (ABC1), member 12	protein-coding	0.010000	0.457711	
mm_85233.1	chr9	98033099	98033299	-	1	NA	NA	NA	-32	NM_022319	64085	Mm.440903	NM_022319	ENSMUSG00000032452	Clstn2	2900042C18Rik|AI448973|CSTN2|Cs2|Cst-2|mKIAA4134	calsyntenin 2	protein-coding	0.140000	0.721393	
mm_6507.1	chr1	74304228	74304428	-	1	NA	NA	NA	8	NM_027154	69660	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.050000	0.577114	
mm_116093.1	chr13	28757782	28757982	-	1	NA	NA	NA	-47009	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.020000	0.477612	
mm_101415.1	chr11	29246297	29246497	-	1	NA	NA	NA	875	NM_025740	216618	Mm.128663	NM_025740	ENSMUSG00000020462	Cfap36	2300003H10|4931428D14Rik|Ccdc104	cilia and flagella associated protein 36	protein-coding	0.025000	0.388060	
mm_38859.1	chr4	149426283	149426483	-	1	NA	NA	NA	248	NM_022022	63958	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0.075000	0.706468	-60(TGCTTTTAGAGG,-,0.00),-59(GCTTTTAGAGGG,+,0.00)
mm_74064.1	chr8	122421702	122421902	+	1	NA	NA	NA	-283	NM_145834	234836	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.025000	0.597015	
mm_24145.1	chr3	88324979	88325179	+	1	NA	NA	NA	56	NM_020003	56700	Mm.439922	NM_020003	ENSMUSG00000001418	Glmp	0610031J06Rik|AB027141|NCU-G1	glycosylated lysosomal membrane protein	protein-coding	0.015000	0.547264	-99(GCCCCTTTAAGA,-,0.00)
mm_102717.1	chr11	67114786	67114986	-	1	NA	NA	NA	5194	NR_038055	74184	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	0.020000	0.477612	
mm_100891.1	chr11	6065613	6065813	-	1	NA	NA	NA	35	NM_001174054	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	0.215000	0.840796	
mm_99374.1	chr11	101984197	101984397	+	1	NA	NA	NA	494	NM_028207	72349	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	0.045000	0.587065	
mm_167648.1	chr9	65460815	65461015	+	1	NA	NA	NA	-22	NM_138584	27965	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	spastic paraplegia 21 homolog (human)	protein-coding	0.090000	0.701493	
mm_15506.1	chr2	158068779	158068979	+	1	NA	NA	NA	22918	NR_040609	72340	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0.000000	0.353234	
mm_96673.1	chr11	69411231	69411431	+	1	NA	NA	NA	2344	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.045000	0.577114	-96(GCCCAGAAAGGG,-,0.00)
mm_158257.1	chrX	108834242	108834442	-	1	NA	NA	NA	13	NM_001081477	382236	Mm.100112	NM_001081477	ENSMUSG00000063663	Brwd3	Brodl|D030064D06Rik|Gm596	bromodomain and WD repeat domain containing 3	protein-coding	0.060000	0.601990	
mm_85000.1	chr9	86880269	86880469	-	1	NA	NA	NA	28	NM_001277982	20616	Mm.281651	NM_013669	ENSMUSG00000033419	Snap91	91kDa|AP180|F1-20|mKIAA0656	synaptosomal-associated protein 91	protein-coding	0.150000	0.786070	
mm_77984.1	chr9	7873033	7873233	+	1	NA	NA	NA	37	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.025000	0.527363	75(CGCCTTAAGAGG,-,0.00),76(GCCTTAAGAGGC,+,0.00)
mm_17146.1	chr2	25196612	25196812	-	1	NA	NA	NA	101	NM_146115	227612	Mm.119747	NM_146115	ENSMUSG00000059555	Tor4a	A830007P12Rik	torsin family 4, member A	protein-coding	0.010000	0.592040	
mm_68873.1	chr7	126446899	126447099	-	1	NA	NA	NA	16074	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.015000	0.557214	
mm_97929.1	chr11	83648060	83648260	+	1	NA	NA	NA	1218	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.020000	0.477612	
mm_37163.1	chr4	117155980	117156180	-	1	NA	NA	NA	52	NM_009098	20116	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	0.110000	0.666667	
mm_90917.1	chr10	12548800	12549000	-	1	NA	NA	NA	312835	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.020000	0.582090	
mm_77442.1	chr8	121652804	121653004	-	1	NA	NA	NA	-971	NM_080855	142682	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0.170000	0.786070	
mm_153551.1	chr19	42091265	42091465	-	1	NA	NA	NA	930	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	0.020000	0.442786	
mm_35935.1	chr4	53032722	53032922	-	1	NA	NA	NA	20942	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.015000	0.378109	
mm_163997.1	chr14	64440925	64441125	-	1	NA	NA	NA	1	NM_001253715	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.055000	0.552239	-83(CCTCTTATAGGT,+,0.00),-50(GCCTTTTTATGC,-,0.00),-48(CTTTTTATGCAC,+,0.00)
mm_5269.1	chr1	17429475	17429675	-	1	NA	NA	NA	-172326	NM_053191	94227	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	0.000000	0.363184	
mm_152954.1	chr19	29176449	29176649	-	1	NA	NA	NA	41270	NR_029778	724062		NR_029778	ENSMUSG00000065556	Mir101b	Mirn101b|mir-101b	microRNA 101b	ncRNA	0.000000	0.422886	-22(TGCTTTTTAAAG,-,0.00),-20(CTTTTTAAAGTA,+,0.00)
mm_52591.1	chr6	116671448	116671648	+	1	NA	NA	NA	2288	NM_178045	213391	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.010000	0.557214	-34(CCTTATATGAAC,+,0.00)
mm_105685.1	chr11	107716477	107716677	-	1	NA	NA	NA	-101	NM_007582	12299	Mm.57093	NM_007582	ENSMUSG00000020722	Cacng1	-	calcium channel, voltage-dependent, gamma subunit 1	protein-coding	0.020000	0.567164	
mm_20286.1	chr2	126913013	126913213	-	1	NA	NA	NA	-10728	NR_106202	102466258		NR_106202	ENSMUSG00000098896	Mir3473g	Gm27751|mmu-mir-3473g	microRNA 3473g	ncRNA	0.015000	0.358209	
mm_48849.1	chr5	149618983	149619183	-	1	NA	NA	NA	17232	NM_013559	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.015000	0.487562	
mm_133767.1	chr16	94569719	94569919	+	1	NA	NA	NA	-387	NM_007890	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.125000	0.686567	
mm_152025.1	chr19	6057653	6057853	-	1	NA	NA	NA	-2	NM_026246	18120	Mm.181290	NM_026246	ENSMUSG00000007338	Mrpl49	4833419D18Rik|Nof1	mitochondrial ribosomal protein L49	protein-coding	0.115000	0.681592	
mm_95308.1	chr11	46227042	46227242	+	1	NA	NA	NA	-4993	NR_105955	102465598		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0.005000	0.497512	-34(GCTTTAATACTC,+,0.00)
mm_130005.1	chr15	86214265	86214465	-	1	NA	NA	NA	-94	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.130000	0.641791	
mm_6681.1	chr1	80598937	80599137	-	1	NA	NA	NA	66315	NM_001285927	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.000000	0.388060	
mm_129145.1	chr15	76202168	76202368	-	1	NA	NA	NA	-1661	NM_201390	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.000000	0.587065	
mm_167898.1	chrX	73494609	73494809	-	1	NA	NA	NA	-8377	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.020000	0.522388	
mm_28550.1	chr3	93279562	93279762	-	1	NA	NA	NA	-40087	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.010000	0.407960	
mm_46218.1	chr5	98931611	98931811	-	1	NA	NA	NA	77296	NM_001310677	110075	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0.000000	0.348259	
mm_118123.1	chr13	104178340	104178540	-	1	NA	NA	NA	26	NM_025879	66975	Mm.272541	NM_025879	ENSMUSG00000021711	Trappc13	2410002O22Rik|2610524F24Rik|AI451892|AU017229	trafficking protein particle complex 13	protein-coding	0.040000	0.532338	
mm_4781.1	chr1	183631345	183631545	+	1	NA	NA	NA	212197	NM_001308052	78772	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0.015000	0.442786	
mm_98255.1	chr11	88624910	88625110	+	1	NA	NA	NA	5759	NR_131025	68397	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	0.025000	0.442786	
mm_14660.1	chr2	137855753	137855953	+	1	NA	NA	NA	-400731	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.000000	0.373134	
mm_21333.1	chr2	157101617	157101817	-	1	NA	NA	NA	14662	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.045000	0.507463	
mm_52005.1	chr6	92940482	92940682	+	1	NA	NA	NA	0	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.030000	0.601990	
mm_111631.1	chr12	102439716	102439916	-	1	NA	NA	NA	-3	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.065000	0.611940	
mm_74229.1	chr8	124231305	124231505	+	1	NA	NA	NA	11	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0.205000	0.835821	
mm_91895.1	chr10	60002879	60003079	-	1	NA	NA	NA	156	NM_001347451	52717	Mm.21793	NM_025514	ENSMUSG00000020107	Anapc16	2310005G07Rik|APC16|D10Ertd641e	anaphase promoting complex subunit 16	protein-coding	0.095000	0.646766	
mm_89279.1	chr10	87863949	87864149	+	1	NA	NA	NA	2938	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.015000	0.442786	
mm_146544.1	chr18	6135129	6135329	-	1	NA	NA	NA	869	NM_029277	75415	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0.025000	0.452736	
mm_89481.1	chr10	93595882	93596082	+	1	NA	NA	NA	-6324	NM_027246	69878	Mm.259642	NM_027246	ENSMUSG00000020018	Snrpf	2010013O18Rik|SMF|sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding	0.010000	0.522388	
mm_68167.1	chr7	103812564	103812764	-	1	NA	NA	NA	1259	NM_016956	15130	Mm.288567	NM_016956		Hbb-b2	AI036344|Hbb2|Hbbt2|beta2	hemoglobin, beta adult minor chain	protein-coding	0.005000	0.527363	
mm_42000.1	chr5	107900671	107900871	+	1	NA	NA	NA	243	NM_016980	100503670	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	0.130000	0.761194	
mm_78676.1	chr9	40782200	40782400	+	1	NA	NA	NA	-18973	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.060000	0.532338	
mm_123186.1	chr14	57847052	57847252	-	1	NA	NA	NA	20913	NM_026401	67840	Mm.319530	NM_026401	ENSMUSG00000021967	Mrpl57	2610025P17Rik|AV005697|Mrp63	mitochondrial ribosomal protein L57	protein-coding	0.005000	0.323383	
mm_140760.1	chr17	17600271	17600471	-	1	NA	NA	NA	24118	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.000000	0.288557	-31(TTTTTTAAGGGG,+,0.00)
mm_141939.1	chr17	35048376	35048576	-	1	NA	NA	NA	-1731	NM_001146215	17687	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	0.025000	0.562189	
mm_47044.1	chr5	116024346	116024546	-	1	NA	NA	NA	-18	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.090000	0.641791	
mm_170990.1	chr2	7509385	7509585	-	1	NA	NA	NA	-113287	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.040000	0.537313	-31(GTGCATATAAGC,-,0.00)
mm_118050.1	chr13	101709593	101709793	-	1	NA	NA	NA	-17063	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.020000	0.447761	7(CTCCTTATAAAG,-,0.00),9(CCTTATAAAGCT,+,0.00)
mm_64928.1	chr7	16285333	16285533	-	1	NA	NA	NA	-774	NM_172297	243846	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0.015000	0.547264	
mm_31360.1	chr4	47208207	47208407	+	1	NA	NA	NA	295	NM_009928	12819	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.130000	0.731343	
mm_77610.1	chr8	123893367	123893567	-	1	NA	NA	NA	1308	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.010000	0.527363	
mm_131163.1	chr16	6996549	6996749	+	1	NA	NA	NA	-73186	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.010000	0.467662	
mm_64693.1	chr7	4522723	4522923	-	1	NA	NA	NA	-380	NM_009406	21954	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0.015000	0.532338	
mm_68672.1	chr7	118974869	118975069	-	1	NA	NA	NA	20242	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.030000	0.522388	
mm_36205.1	chr4	62408531	62408731	-	1	NA	NA	NA	-8	NM_139291	66440	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	0.045000	0.592040	
mm_153871.1	chr19	46761108	46761308	-	1	NA	NA	NA	-401	NM_033569	94219	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0.090000	0.686567	
mm_62407.1	chr7	101201071	101201271	+	1	NA	NA	NA	92396	NM_199012	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.000000	0.358209	
mm_87984.1	chr10	63951494	63951694	+	1	NA	NA	NA	130539	NM_001164519	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.000000	0.427861	
mm_318.1	chr1	24678347	24678547	+	1	NA	NA	NA	-97	NM_026719	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.040000	0.507463	
mm_145020.1	chr18	38993000	38993200	+	1	NA	NA	NA	-45	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.085000	0.681592	
mm_25762.1	chr3	124321048	124321248	+	1	NA	NA	NA	111	NM_146140	229801	Mm.165810	NM_146140	ENSMUSG00000044528	Tram1l1	A830091N21Rik	translocation associated membrane protein 1-like 1	protein-coding	0.105000	0.676617	
mm_40917.1	chr5	75648482	75648682	+	1	NA	NA	NA	73591	NM_021099	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	KIT proto-oncogene receptor tyrosine kinase	protein-coding	0.030000	0.407960	-7(TTTTTTAAAGCC,+,0.00)
mm_132504.1	chr16	36955192	36955392	+	1	NA	NA	NA	20309	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.035000	0.542289	
mm_111225.1	chr12	84755444	84755644	-	1	NA	NA	NA	17568	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.015000	0.497512	
mm_68885.1	chr7	126447881	126448081	-	1	NA	NA	NA	15092	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.010000	0.582090	
mm_89178.1	chr10	86344507	86344707	+	1	NA	NA	NA	44195	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.020000	0.557214	
mm_66166.1	chr7	31361998	31362198	-	1	NA	NA	NA	-26	NM_001270541	100043326	Mm.479858	NM_001270541	ENSMUSG00000078754	Scgb2b3	Abpbg3|Gm4362	secretoglobin, family 2B, member 3	protein-coding	0.005000	0.517413	
mm_5676.1	chr1	43145465	43145665	-	1	NA	NA	NA	18396	NM_010212	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.020000	0.562189	
mm_95010.1	chr11	31933251	31933451	+	1	NA	NA	NA	-32282	NM_026262	67592	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	0.015000	0.457711	
mm_89833.1	chr10	106632320	106632520	+	1	NA	NA	NA	-29940	NR_131026	75833	Mm.159596	NR_131026		4930532I03Rik	-	RIKEN cDNA 4930532I03 gene	ncRNA	0.015000	0.437811	
mm_159888.1	chr6	28428260	28428460	-	1	NA	NA	NA	459	NM_019569	56223	Mm.31708	NM_019569	ENSMUSG00000029707	Fscn3	-	fascin actin-bundling protein 3	protein-coding	0.005000	0.487562	
mm_71298.1	chr8	41239643	41239843	+	1	NA	NA	NA	-16	NM_023662	18536	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	0.100000	0.681592	
mm_93557.1	chr10	116473366	116473566	-	1	NA	NA	NA	57	NM_021452	58802	Mm.440652	NM_021452	ENSMUSG00000054934	Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding	0.095000	0.656716	
mm_64067.1	chr7	140881872	140882072	+	1	NA	NA	NA	-103	NM_001177804	64384	Mm.29760	NM_022433	ENSMUSG00000025486	Sirt3	2310003L23Rik|AI848213|Sir2l3	sirtuin 3	protein-coding	0.060000	0.661692	
mm_119743.1	chr14	54122109	54122309	+	1	NA	NA	NA	131720	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.025000	0.522388	
mm_64680.1	chr7	4509828	4510028	-	1	NA	NA	NA	6047	NM_001277903	21955	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0.050000	0.532338	
mm_19289.1	chr2	90451163	90451363	-	1	NA	NA	NA	27911	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.005000	0.457711	
mm_107236.1	chr12	26478253	26478453	+	1	NA	NA	NA	9138	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.010000	0.497512	
mm_136870.1	chr17	12916366	12916566	+	1	NA	NA	NA	137	NM_013686	21454	Mm.229342	NM_013686	ENSMUSG00000068039	Tcp1	AI528772|CCT|Cct1|Ccta|TRic|Tcp-1|Tp63|c-cpn|p63	t-complex protein 1	protein-coding	0.110000	0.641791	
mm_168159.1	chr10	4266124	4266324	+	1	NA	NA	NA	-105	NM_031185	83397	Mm.27481	NM_031185	ENSMUSG00000038587	Akap12	AI317366|SSeCKS|Srcs5|Tsga12	A kinase (PRKA) anchor protein (gravin) 12	protein-coding	0.030000	0.606965	-80(CCTTTAATGACC,+,0.00)
mm_92927.1	chr10	84440595	84440795	-	1	NA	NA	NA	-224	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.140000	0.771144	
mm_142766.1	chr17	49509841	49510041	-	1	NA	NA	NA	54396	NM_001008231	76441	Mm.211275	NM_001008231	ENSMUSG00000040260	Daam2	2310016D11Rik|AI843643|AW557870	dishevelled associated activator of morphogenesis 2	protein-coding	0.015000	0.547264	
mm_64380.1	chr7	142471668	142471868	+	1	NA	NA	NA	-75	NM_001271508	16985	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.025000	0.621891	
mm_136002.1	chr16	75447100	75447300	-	1	NA	NA	NA	138861	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.020000	0.542289	-8(GCATTTAGAGCA,+,0.00)
mm_102663.1	chr11	64208947	64209147	-	1	NA	NA	NA	129563	NR_033780	66456	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA	0.015000	0.427861	
mm_100828.1	chr11	5394331	5394531	-	1	NA	NA	NA	-12691	NM_001290501	407821	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0.005000	0.378109	
mm_114271.1	chr13	58148460	58148660	+	1	NA	NA	NA	1611	NR_126543	67339	Mm.121929	NR_126543		1700066J03Rik	-	RIKEN cDNA 1700066J03 gene	ncRNA	0.030000	0.492537	
mm_158328.1	chrX	133961576	133961776	-	1	NA	NA	NA	20136	NM_001290718	27359	Mm.38674	NM_013757	ENSMUSG00000031255	Sytl4	Gph|Slp4	synaptotagmin-like 4	protein-coding	0.025000	0.482587	
mm_83055.1	chr9	37545051	37545251	-	1	NA	NA	NA	5896	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.045000	0.597015	
mm_106955.1	chr12	8792337	8792537	+	1	NA	NA	NA	21041	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.025000	0.432836	
mm_109949.1	chr12	11331964	11332164	-	1	NA	NA	NA	32177	NR_106136	102465775		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.040000	0.522388	
mm_144760.1	chr18	35771487	35771687	+	1	NA	NA	NA	28	NM_019912	56550	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0.115000	0.791045	
mm_137461.1	chr17	26602171	26602371	+	1	NA	NA	NA	40759	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.020000	0.562189	
mm_27069.1	chr3	28157064	28157264	-	1	NA	NA	NA	-106050	NM_001163007	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.010000	0.417910	
mm_122104.1	chr14	30919313	30919513	-	1	NA	NA	NA	4174	NM_008407	16426	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	0.025000	0.552239	
mm_75298.1	chr8	41056478	41056678	-	1	NA	NA	NA	-1782	NM_001005864	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.025000	0.522388	
mm_92077.1	chr10	62665281	62665481	-	1	NA	NA	NA	-14183	NM_053183	94213	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	0.030000	0.542289	
mm_160078.1	chr7	12422341	12422541	-	1	NA	NA	NA	50	NM_001033820	619331	Mm.361832	NM_001033820	ENSMUSG00000034071	Zfp551	9630004E07Rik|Znf551	zinc fingr protein 551	protein-coding	0.050000	0.616915	
mm_23151.1	chr3	40459744	40459944	+	1	NA	NA	NA	63068	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.015000	0.368159	-83(GCACCTAAAAGC,-,0.00)
mm_53063.1	chr6	124913586	124913786	+	1	NA	NA	NA	-1981	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.050000	0.567164	
mm_149807.1	chr19	23758891	23759091	+	1	NA	NA	NA	115	NM_177034	319924	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.110000	0.741294	
mm_165414.1	chr2	147237290	147237490	+	1	NA	NA	NA	49966	NR_108091	78068	Mm.261511	NR_108091	ENSMUSG00000053545	6430503K07Rik	-	RIKEN cDNA 6430503K07 gene	ncRNA	0.010000	0.477612	
mm_69804.1	chr7	141193873	141194073	-	1	NA	NA	NA	31	NM_001130444	15461	Mm.334313	NM_008284	ENSMUSG00000025499	Hras	H-ras|Ha-ras|Harvey-ras|Hras-1|Hras1|Kras2|c-H-ras|c-Ha-ras|c-rasHa|ras	Harvey rat sarcoma virus oncogene	protein-coding	0.185000	0.830846	
mm_36459.1	chr4	82505585	82505785	-	1	NA	NA	NA	94	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.045000	0.527363	
mm_141388.1	chr17	29099456	29099656	-	1	NA	NA	NA	5787	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.015000	0.358209	
mm_131059.1	chr16	4276440	4276640	+	1	NA	NA	NA	47311	NR_003628	436332	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	0.010000	0.512438	
mm_79204.1	chr9	48985305	48985505	+	1	NA	NA	NA	20	NM_175482	235323	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	0.140000	0.751244	
mm_140.1	chr1	10993270	10993470	+	1	NA	NA	NA	-95	NM_029525	109294	Mm.123247	NM_029525	ENSMUSG00000048960	Prex2	6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	protein-coding	0.010000	0.477612	
mm_151379.1	chr19	56066034	56066234	+	1	NA	NA	NA	170813	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.000000	0.402985	
mm_43860.1	chr5	143464513	143464713	+	1	NA	NA	NA	120	NM_144915	231871	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.135000	0.706468	
mm_167373.1	chr8	91117557	91117757	-	1	NA	NA	NA	16370	NM_001302337	14339	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	0.015000	0.447761	
mm_8690.1	chr1	157256539	157256739	-	1	NA	NA	NA	-147959	NM_001305063	73435	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	0.010000	0.497512	
mm_92474.1	chr10	78092654	78092854	-	1	NA	NA	NA	23386	NM_015790	50723	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.050000	0.567164	
mm_103238.1	chr11	70686829	70687029	-	1	NA	NA	NA	1176	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.010000	0.512438	
mm_118596.1	chr14	20688385	20688585	+	1	NA	NA	NA	-2150	NR_105911	102465571		NR_105911	ENSMUSG00000098602	Mir6946	Gm27799|mmu-mir-6946	microRNA 6946	ncRNA	0.040000	0.522388	
mm_29423.1	chr3	109008980	109009180	-	1	NA	NA	NA	18527	NM_001163567	329739	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.010000	0.422886	
mm_93532.1	chr10	115362081	115362281	-	1	NA	NA	NA	81	NM_133683	67226	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0.075000	0.641791	
mm_74799.1	chr8	22463123	22463323	-	1	NA	NA	NA	-13477	NM_011394	20516	Mm.323901	NM_011394	ENSMUSG00000037656	Slc20a2	MolPit2|Pit-2|Pit2|Ram-1|Ram1	solute carrier family 20, member 2	protein-coding	0.020000	0.472637	-29(CCCTCTATAAGC,-,0.00)
mm_91435.1	chr10	33624499	33624699	-	1	NA	NA	NA	1	NM_175448	215890	Mm.94461	NM_175448	ENSMUSG00000019785	Clvs2	A330019N05Rik|Rlbp1l2	clavesin 2	protein-coding	0.065000	0.646766	
mm_91762.1	chr10	51494390	51494590	-	1	NA	NA	NA	3592	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.472637	
mm_70020.1	chr7	142575523	142575723	-	1	NA	NA	NA	1524	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.025000	0.552239	
mm_153805.1	chr19	46045042	46045242	-	1	NA	NA	NA	69	NM_001113408	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.150000	0.721393	
mm_96751.1	chr11	69901036	69901236	+	1	NA	NA	NA	-150	NM_027419	70419	Mm.272859	NM_027419	ENSMUSG00000018570	2810408A11Rik	1700019L01Rik|4930470J18Rik	RIKEN cDNA 2810408A11 gene	protein-coding	0.025000	0.512438	
mm_89876.1	chr10	108294944	108295144	+	1	NA	NA	NA	-37145	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.025000	0.567164	
mm_135600.1	chr16	51686663	51686863	-	1	NA	NA	NA	-344786	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.000000	0.373134	
mm_5949.1	chr1	56871589	56871789	-	1	NA	NA	NA	99645	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.025000	0.517413	
mm_78883.1	chr9	44581566	44581766	+	1	NA	NA	NA	-23226	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.010000	0.497512	
mm_125379.1	chr15	40654937	40655137	+	1	NA	NA	NA	-5	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding	0.135000	0.751244	
mm_53961.1	chr6	5495826	5496026	-	1	NA	NA	NA	352	NM_013743	27273	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.035000	0.557214	
mm_60046.1	chr7	31059586	31059786	+	1	NA	NA	NA	-249	NM_144556	243914	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	0.000000	0.502488	
mm_85817.1	chr9	110408082	110408282	-	1	NA	NA	NA	28	NM_001081043	104831	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.105000	0.741294	
mm_143081.1	chr17	57059726	57059926	-	1	NA	NA	NA	37	NM_025877	66972	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	0.075000	0.701493	
mm_112379.1	chr12	119237874	119238074	-	1	NA	NA	NA	302	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.065000	0.641791	-26(GCCTTAAGGGCC,+,0.00)
mm_158996.1	chr1	138967599	138967799	+	1	NA	NA	NA	-22	NM_181347	329260	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.025000	0.447761	84(CAGTTTATATGG,-,0.00),86(GTTTATATGGTC,+,0.00)
mm_112746.1	chr13	19341668	19341868	+	1	NA	NA	NA	54045	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.393035	
mm_124031.1	chr14	77024843	77025043	-	1	NA	NA	NA	11674	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding	0.000000	0.343284	
mm_30668.1	chr4	11123865	11124065	+	1	NA	NA	NA	-10132	NR_030455	735261		NR_030455	ENSMUSG00000105333	Mir684-2	Mirn684-2	microRNA 684-2	ncRNA	0.015000	0.502488	
mm_67453.1	chr7	80401399	80401599	-	1	NA	NA	NA	1313	NM_011046	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.005000	0.557214	
mm_20813.1	chr2	144527283	144527483	-	1	NA	NA	NA	15	NM_172859	241688	Mm.442156	NM_172859	ENSMUSG00000037259	Dzank1	2810039F03Rik|6330439K17Rik|6430408C01|AI851115|Ankrd64	double zinc ribbon and ankyrin repeat domains 1	protein-coding	0.090000	0.636816	
mm_119134.1	chr14	31166424	31166624	+	1	NA	NA	NA	2117	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.030000	0.601990	
mm_146601.1	chr18	9485247	9485447	-	1	NA	NA	NA	-35197	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.000000	0.467662	-36(CTGTATAAAAGT,-,0.00)
mm_134793.1	chr16	24192933	24193133	-	1	NA	NA	NA	-200317	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.025000	0.502488	
mm_57883.1	chr6	131348272	131348472	-	1	NA	NA	NA	-34545	NM_172891	243659	Mm.20114	NM_172891	ENSMUSG00000032899	Styk1	9130025L13|AI326477|Nok	serine/threonine/tyrosine kinase 1	protein-coding	0.000000	0.472637	
mm_97722.1	chr11	80383202	80383402	+	1	NA	NA	NA	23	NM_001130171	22680	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0.080000	0.597015	
mm_112548.1	chr13	12395253	12395453	+	1	NA	NA	NA	-22	NM_144835	217995	Mm.171186	NM_144835	ENSMUSG00000050244	Heatr1	AA517551|B130016L12Rik|BC019693	HEAT repeat containing 1	protein-coding	0.050000	0.522388	
mm_37586.1	chr4	126429348	126429548	-	1	NA	NA	NA	94	NM_153402	214150	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0.115000	0.691542	
mm_1743.1	chr1	75450622	75450822	+	1	NA	NA	NA	212	NM_183022	241118	Mm.110790	NM_183022	ENSMUSG00000033007	Asic4	Accn4|BNAC4	acid-sensing (proton-gated) ion channel family member 4	protein-coding	0.045000	0.706468	
mm_161601.1	chr16	37654267	37654467	-	1	NA	NA	NA	1	NM_026610	68194	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.085000	0.641791	
mm_45902.1	chr5	88676132	88676332	-	1	NA	NA	NA	-61	NM_178700	231413	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.115000	0.771144	
mm_162013.1	chr19	44293356	44293556	+	1	NA	NA	NA	-220	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.020000	0.522388	
mm_54083.1	chr6	15731873	15732073	-	1	NA	NA	NA	11312	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.020000	0.383085	
mm_87583.1	chr10	56555989	56556189	+	1	NA	NA	NA	178789	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.015000	0.447761	
mm_89809.1	chr10	103347001	103347201	+	1	NA	NA	NA	-20707	NM_001252330	103098	Mm.458408	NM_175328	ENSMUSG00000019894	Slc6a15	AA536730|AI326450|AI326451|v7-3	solute carrier family 6 (neurotransmitter transporter), member 15	protein-coding	0.005000	0.527363	
mm_40564.1	chr5	62766233	62766433	+	1	NA	NA	NA	-156	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.140000	0.791045	
mm_47845.1	chr5	134344136	134344336	-	1	NA	NA	NA	-29476	NM_010365	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.025000	0.522388	
mm_155350.1	chrX	68683848	68684048	+	1	NA	NA	NA	5407	NM_001290424	14265	Mm.3451	NM_008031	ENSMUSG00000000838	Fmr1	FMRP|Fmr-1	fragile X mental retardation syndrome 1	protein-coding	0.000000	0.298507	
mm_71575.1	chr8	54550232	54550432	+	1	NA	NA	NA	1	NM_029569	76294	Mm.33171	NM_029569	ENSMUSG00000031519	Asb5	1110018D09Rik	ankyrin repeat and SOCs box-containing 5	protein-coding	0.020000	0.452736	-44(ACTTTTATGGAC,+,0.00)
mm_11402.1	chr2	31492227	31492427	+	1	NA	NA	NA	22019	NR_002687	432466	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.015000	0.562189	
mm_151063.1	chr19	47240237	47240437	+	1	NA	NA	NA	11494	NM_001163480	18011	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.035000	0.621891	
mm_49396.1	chr6	28423490	28423690	+	1	NA	NA	NA	-50	NM_007480	11844	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	0.175000	0.850746	
mm_120675.1	chr14	70563390	70563590	+	1	NA	NA	NA	9434	NM_021877	15460	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	0.015000	0.572139	
mm_32797.1	chr4	117019346	117019546	+	1	NA	NA	NA	38	NM_001111277	108067	Mm.34612	NM_175135	ENSMUSG00000028683	Eif2b3	1190002P15Rik	eukaryotic translation initiation factor 2B, subunit 3	protein-coding	0.130000	0.706468	
mm_79337.1	chr9	53341709	53341909	+	1	NA	NA	NA	40139	NM_176846	320051	Mm.277540	NM_176846	ENSMUSG00000034584	Exph5	AC079869.22gm5|B130009M24Rik|E030050P12|Kiaa0624|Slac2b|slac2-b	exophilin 5	protein-coding	0.025000	0.368159	39(AGCTATAAAAGA,-,0.00)
mm_114017.1	chr13	52617300	52617500	+	1	NA	NA	NA	20518	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.020000	0.512438	
mm_108084.1	chr12	73997640	73997840	+	1	NA	NA	NA	-21	NM_172804	238266	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding	0.185000	0.825871	
mm_171354.1	chr4	110670000	110670200	+	1	NA	NA	NA	272402	NM_030231	78933	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	0.000000	0.368159	65(TGCTATATAAGC,-,0.00)
mm_40448.1	chr5	53594902	53595102	+	1	NA	NA	NA	4516	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.010000	0.333333	
mm_133328.1	chr16	78309446	78309646	+	1	NA	NA	NA	7875	NM_001276263	13052	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	0.020000	0.507463	
mm_142242.1	chr17	37482405	37482605	-	1	NA	NA	NA	1024	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.015000	0.507463	
mm_46267.1	chr5	99964699	99964899	-	1	NA	NA	NA	14139	NM_001077266	11991	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.005000	0.363184	-71(TAGTATATAAGC,-,0.00)
mm_164752.1	chr17	81375391	81375591	-	1	NA	NA	NA	-310406	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.000000	0.412935	
mm_67893.1	chr7	99479919	99480119	-	1	NA	NA	NA	-312	NR_002173	449631	Mm.236868	NR_002173	ENSMUSG00000064966	Snord15b	Gm5775|Rnu15-b|Rnu15b|U15B	small nucleolar RNA, C/D box 14B	snoRNA	0.015000	0.507463	
mm_58580.1	chr7	4915145	4915345	+	1	NA	NA	NA	28	NM_170759	232816	Mm.27442	NM_170759	ENSMUSG00000074406	Zfp628	Zec|Znf628	zinc finger protein 628	protein-coding	0.150000	0.776119	
mm_36595.1	chr4	88719929	88720129	-	1	NA	NA	NA	2479	NM_172871	242521	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|ENSMUSG00000070923|mKIAA1354	kelch-like 9	protein-coding	0.000000	0.298507	
mm_7409.1	chr1	119422058	119422258	-	1	NA	NA	NA	90	NM_008381	16324	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	0.100000	0.646766	
mm_108806.1	chr12	92782428	92782628	+	1	NA	NA	NA	662295	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0.005000	0.388060	
mm_134742.1	chr16	23029274	23029474	-	1	NA	NA	NA	-273	NM_001102410	385643	Mm.440414	NM_201375	ENSMUSG00000060459	Kng2	-	kininogen 2	protein-coding	0.010000	0.477612	
mm_41354.1	chr5	90504858	90505058	+	1	NA	NA	NA	-13991	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.040000	0.532338	
mm_95039.1	chr11	32267627	32267827	+	1	NA	NA	NA	-20	NM_001284359	17168	Mm.263161	NM_181569	ENSMUSG00000020289	Nprl3	Aag|CGTHBA|HS-26|HS-40|Mare|Phg|Prox1|m(alpha)RE	nitrogen permease regulator-like 3	protein-coding	0.105000	0.597015	
mm_54909.1	chr6	47778238	47778438	-	1	NA	NA	NA	25314	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.065000	0.582090	
mm_21423.1	chr2	158146291	158146491	-	1	NA	NA	NA	1	NM_009373	21817	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.130000	0.761194	
mm_104616.1	chr11	97280360	97280560	-	1	NA	NA	NA	116	NM_008942	19155	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0.125000	0.796020	
mm_92409.1	chr10	76721365	76721565	-	1	NA	NA	NA	4579	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.040000	0.552239	
mm_122365.1	chr14	39385109	39385309	-	1	NA	NA	NA	-87220	NR_131973	432842	Mm.352566	NR_131973		LOC432842	-	uncharacterized LOC432842	ncRNA	0.000000	0.308458	-6(TTTTTAATAGCC,+,0.00)
mm_31266.1	chr4	45320278	45320478	+	1	NA	NA	NA	225	NM_025513	66362	Mm.275788	NM_025513	ENSMUSG00000028322	Exosc3	2310005D06Rik|AI593501|Rrp40	exosome component 3	protein-coding	0.130000	0.706468	
mm_23967.1	chr3	84977481	84977681	+	1	NA	NA	NA	25370	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.010000	0.353234	
mm_76409.1	chr8	84893205	84893405	-	1	NA	NA	NA	616	NM_001044744	270076	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	0.015000	0.507463	
mm_4425.1	chr1	172505182	172505382	+	1	NA	NA	NA	5036	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.050000	0.626866	
mm_110854.1	chr12	73286625	73286825	-	1	NA	NA	NA	-14	NM_029580	76357	Mm.311344	NM_029580	ENSMUSG00000034442	Trmt5	2610027O18Rik|mKIAA1393	TRM5 tRNA methyltransferase 5	protein-coding	0.090000	0.651741	
mm_128519.1	chr15	53902394	53902594	-	1	NA	NA	NA	-58	NM_177225	320679	Mm.442455	NM_177225	ENSMUSG00000058656	Samd12	A830094I09Rik	sterile alpha motif domain containing 12	protein-coding	0.070000	0.597015	
mm_59761.1	chr7	28830022	28830222	+	1	NA	NA	NA	-3672	NM_010706	16855	Mm.210336	NM_010706	ENSMUSG00000053964	Lgals4	gal-4	lectin, galactose binding, soluble 4	protein-coding	0.020000	0.557214	
mm_72161.1	chr8	72219622	72219822	+	1	NA	NA	NA	-8	NM_026455	67922	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	0.070000	0.597015	
mm_112920.1	chr13	20924666	20924866	+	1	NA	NA	NA	130653	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.313433	
mm_2476.1	chr1	105844953	105845153	+	1	NA	NA	NA	64330	NM_009399	21934	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.005000	0.492537	
mm_134315.1	chr16	15895628	15895828	-	1	NA	NA	NA	8442	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.000000	0.442786	
mm_61770.1	chr7	83148296	83148496	+	1	NA	NA	NA	-74	NM_177895	330578	Mm.5796	NM_177895	ENSMUSG00000053528	A530021J07Rik	-	Riken cDNA A530021J07 gene	protein-coding	0.010000	0.412935	
mm_97692.1	chr11	80154020	80154220	+	1	NA	NA	NA	-42	NM_172133	216991	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.080000	0.681592	
mm_145680.1	chr18	61587495	61587695	+	1	NA	NA	NA	32013	NM_146087	93687	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0.015000	0.407960	
mm_54223.1	chr6	26766805	26767005	-	1	NA	NA	NA	835479	NR_040771	626904	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.015000	0.407960	
mm_165084.1	chr19	47023277	47023477	+	1	NA	NA	NA	-8188	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.030000	0.527363	
mm_82664.1	chr9	22117008	22117208	-	1	NA	NA	NA	-2939	NM_170777	66126	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	0.090000	0.641791	
mm_171.1	chr1	13372817	13373017	+	1	NA	NA	NA	-488	NM_001302702	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.105000	0.796020	
mm_148427.1	chr19	3941535	3941735	+	1	NA	NA	NA	6449	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.015000	0.547264	
mm_159614.1	chr4	133176350	133176550	+	1	NA	NA	NA	-19205	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.035000	0.502488	
mm_120541.1	chr14	67234755	67234955	+	1	NA	NA	NA	1563	NM_001276387	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.035000	0.542289	
mm_105890.1	chr11	114934154	114934354	-	1	NA	NA	NA	132	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.015000	0.542289	
mm_95494.1	chr11	51650848	51651048	+	1	NA	NA	NA	-6	NR_027958	97775	Mm.220299	NM_175289	ENSMUSG00000052563	D930048N14Rik	AI315703|R75254	RIKEN cDNA D930048N14 gene	ncRNA	0.150000	0.791045	
mm_75243.1	chr8	39642542	39642742	-	1	NA	NA	NA	36	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.338308	
mm_81736.1	chr9	113792644	113792844	+	1	NA	NA	NA	-586	NM_001286603	76499	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.025000	0.547264	
mm_32997.1	chr4	120516681	120516881	+	1	NA	NA	NA	-15450	NM_177570	194219	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	0.020000	0.492537	
mm_144142.1	chr18	4994588	4994788	+	1	NA	NA	NA	-51901	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.020000	0.487562	
mm_146184.1	chr18	75766968	75767168	+	1	NA	NA	NA	-53110	NM_145356	207259	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0.020000	0.472637	
mm_166004.1	chr4	116685565	116685765	+	1	NA	NA	NA	66	NM_011034	18477	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0.110000	0.646766	-98(GGCTATAAAAGC,-,0.00)
mm_149293.1	chr19	10688681	10688881	+	1	NA	NA	NA	-34	NM_181403	107305	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.110000	0.726368	
mm_131975.1	chr16	24982606	24982806	+	1	NA	NA	NA	-76933	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.005000	0.407960	25(GCTTTAATAGGC,+,0.00)
mm_137185.1	chr17	23818851	23819051	+	1	NA	NA	NA	10158	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.035000	0.542289	
mm_31864.1	chr4	80002733	80002933	+	1	NA	NA	NA	-831380	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.025000	0.373134	
mm_160266.1	chr7	112759338	112759538	+	1	NA	NA	NA	54	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.060000	0.522388	-47(TTCTTGAAAAGG,-,0.00)
mm_96025.1	chr11	59548542	59548742	+	1	NA	NA	NA	5956	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.030000	0.532338	
mm_87163.1	chr10	36974636	36974836	+	1	NA	NA	NA	192	NM_008229	15182	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.100000	0.711443	
mm_23318.1	chr3	53261102	53261302	+	1	NA	NA	NA	202056	NM_172501	212114	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0.015000	0.427861	
mm_164446.1	chr16	49913066	49913266	+	1	NA	NA	NA	57512	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.030000	0.492537	-24(GCATTAAGAGTC,+,0.00)
mm_69555.1	chr7	135698781	135698981	-	1	NA	NA	NA	17498	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.005000	0.378109	
mm_29781.1	chr3	127408954	127409154	-	1	NA	NA	NA	4	NM_001327939	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.030000	0.597015	
mm_60334.1	chr7	44319722	44319922	+	1	NA	NA	NA	9558	NM_001034115	243961	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3/ankyrin domain gene 1	protein-coding	0.005000	0.467662	
mm_34020.1	chr4	138017250	138017450	+	1	NA	NA	NA	23894	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.030000	0.567164	
mm_111496.1	chr12	99376030	99376230	-	1	NA	NA	NA	73944	NM_183186	71375	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.015000	0.432836	
mm_159974.1	chr6	112489670	112489870	-	1	NA	NA	NA	38	NM_001081147	18430	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding	0.110000	0.691542	-89(CACTTTAAAGAG,-,0.00),-87(CTTTAAAGAGCC,+,0.00)
mm_98354.1	chr11	93600402	93600602	+	1	NA	NA	NA	285264	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.000000	0.427861	
mm_125659.1	chr15	64055280	64055480	+	1	NA	NA	NA	5068	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.010000	0.502488	
mm_14178.1	chr2	126758614	126758814	+	1	NA	NA	NA	24746	NM_029163	75083	Mm.389373	NM_029163	ENSMUSG00000027364	Usp50	1700086G18Rik|4930511O11Rik	ubiquitin specific peptidase 50	protein-coding	0.015000	0.422886	
mm_9372.1	chr1	172206681	172206881	-	1	NA	NA	NA	23	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.075000	0.731343	
mm_149196.1	chr19	9954780	9954980	+	1	NA	NA	NA	-25720	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.020000	0.517413	
mm_92909.1	chr10	83534036	83534236	-	1	NA	NA	NA	4	NM_153543	216188	Mm.263138	NM_153543	ENSMUSG00000020256	Aldh1l2	D330038I09Rik|mtFDH	aldehyde dehydrogenase 1 family, member L2	protein-coding	0.055000	0.661692	
mm_42127.1	chr5	110906481	110906681	+	1	NA	NA	NA	26778	NM_001267622	209683	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	0.005000	0.383085	-76(AACTATAAAAGA,-,0.00)
mm_152215.1	chr19	8218741	8218941	-	1	NA	NA	NA	-2	NM_172776	236293	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	0.005000	0.328358	63(CACTATTTAAGG,-,0.00)
mm_109363.1	chr12	109636247	109636447	+	1	NA	NA	NA	335	NR_046302	449562		NR_046302	ENSMUSG00000088294	AF357425	MBII-48	snoRNA AF357425	snoRNA	0.005000	0.427861	
mm_694.1	chr1	40580245	40580445	+	1	NA	NA	NA	118	NM_177084	110895	Mm.108602	NM_177084	ENSMUSG00000026065	Slc9a4	AW990558|D730009J23Rik|NHE4	solute carrier family 9 (sodium/hydrogen exchanger), member 4	protein-coding	0.025000	0.432836	
mm_147502.1	chr18	49980231	49980431	-	1	NA	NA	NA	904	NM_001177759	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.025000	0.502488	
mm_50283.1	chr6	47244344	47244544	+	1	NA	NA	NA	48	NM_025771	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.010000	0.537313	
mm_90811.1	chr10	7792714	7792914	-	1	NA	NA	NA	-80	NM_026141	67418	Mm.38927	NM_026141	ENSMUSG00000015757	Ppil4	3732410E19Rik|3830425H19Rik|AI788954|AW146233|PPIase	peptidylprolyl isomerase (cyclophilin)-like 4	protein-coding	0.135000	0.666667	
mm_146803.1	chr18	20745501	20745701	-	1	NA	NA	NA	803	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.065000	0.626866	
mm_148992.1	chr19	8618043	8618243	+	1	NA	NA	NA	147	NM_008766	18399	Mm.30090	NM_008766	ENSMUSG00000024650	Slc22a6	NKT|Oat1|Orctl1|mOat1	solute carrier family 22 (organic anion transporter), member 6	protein-coding	0.025000	0.626866	
mm_92323.1	chr10	75667939	75668139	-	1	NA	NA	NA	-24031	NM_027890	71733	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0.090000	0.726368	
mm_146108.1	chr18	74220420	74220620	+	1	NA	NA	NA	4308	NM_028868	74322	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.020000	0.587065	
mm_148247.1	chr18	80707988	80708188	-	1	NA	NA	NA	85	NM_001164111	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.175000	0.776119	
mm_113596.1	chr13	41001175	41001375	+	1	NA	NA	NA	265	NM_026550	68083	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0.110000	0.661692	-70(GCGCCTAAAAGG,-,0.00)
mm_144073.1	chr17	91065100	91065300	-	1	NA	NA	NA	24405	NM_001346957	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.005000	0.283582	
mm_147816.1	chr18	61735577	61735777	-	1	NA	NA	NA	9287	NR_029432	68982	Mm.441992	NR_029432	ENSMUSG00000098702	1500015A07Rik	-	RIKEN cDNA 1500015A07 gene	ncRNA	0.050000	0.601990	
mm_154027.1	chr19	53424132	53424332	-	1	NA	NA	NA	-33659	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	0.010000	0.462687	
mm_13118.1	chr2	91663864	91664064	+	1	NA	NA	NA	10756	NM_146124	228359	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	0.010000	0.492537	
mm_71819.1	chr8	68892558	68892758	+	1	NA	NA	NA	12103	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.015000	0.477612	
mm_88413.1	chr10	77033172	77033372	+	1	NA	NA	NA	60	NM_031196	20509	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.075000	0.606965	
mm_139198.1	chr17	47655708	47655908	+	1	NA	NA	NA	25118	NM_198421	224836	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	0.025000	0.467662	-99(TGCTATATAAAA,-,0.00)
mm_62818.1	chr7	113295421	113295621	+	1	NA	NA	NA	73818	NM_133700	68815	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0.035000	0.497512	
mm_94666.1	chr11	17211838	17212038	+	1	NA	NA	NA	45	NM_178909	103784	Mm.298132	NM_178909	ENSMUSG00000078970	Wdr92	AI553587|HZGJ	WD repeat domain 92	protein-coding	0.030000	0.502488	
mm_157229.1	chrX	15111364	15111564	-	1	NA	NA	NA	25	NR_033171	67395	Mm.50369	NM_026128	ENSMUSG00000045217	Ppp1r2-ps9	4930403L05Rik	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 9	pseudo	0.030000	0.547264	
mm_46247.1	chr5	99248461	99248661	-	1	NA	NA	NA	4366	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.015000	0.442786	-60(GGCTTTTAAAGG,-,0.00),-59(GCTTTTAAAGGC,+,0.00),-59(GCTTTTAAAGGC,-,0.00),-58(CTTTTAAAGGCA,+,0.00)
mm_106393.1	chr11	118796646	118796846	-	1	NA	NA	NA	-35705	NM_001285438	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.000000	0.422886	
mm_70248.1	chr8	3470718	3470918	+	1	NA	NA	NA	-44	NM_029598	76406	Mm.74996	NM_029598	ENSMUSG00000040340	1700019B03Rik	-	RIKEN cDNA 1700019B03 gene	protein-coding	0.000000	0.517413	
mm_5719.1	chr1	44101567	44101767	-	1	NA	NA	NA	721	NM_029368	75623	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0.050000	0.572139	
mm_129130.1	chr15	76195572	76195772	-	1	NA	NA	NA	38	NM_201394	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.045000	0.611940	
mm_164495.1	chr16	91056329	91056529	-	1	NA	NA	NA	-12050	NM_026110	67367	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.015000	0.482587	
mm_139762.1	chr17	64600690	64600890	+	1	NA	NA	NA	-859	NM_008549	17158	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.160000	0.781095	
mm_113362.1	chr13	32965178	32965378	+	1	NA	NA	NA	-235	NM_011454	20708	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	0.030000	0.487562	
mm_67934.1	chr7	100101347	100101547	-	1	NA	NA	NA	20053	NM_133692	67967	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0.035000	0.507463	
mm_84894.1	chr9	79793414	79793614	-	1	NA	NA	NA	-84	NM_133718	69981	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	0.090000	0.636816	
mm_64653.1	chr7	4149399	4149599	-	1	NA	NA	NA	373	NM_175529	243813	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.110000	0.686567	
mm_24541.1	chr3	93292989	93293189	+	1	NA	NA	NA	-26660	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.020000	0.577114	
mm_157654.1	chrX	57326667	57326867	-	1	NA	NA	NA	11962	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	0.040000	0.626866	
mm_18544.1	chr2	64975587	64975787	-	1	NA	NA	NA	47079	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0.005000	0.482587	
mm_40880.1	chr5	74535395	74535595	+	1	NA	NA	NA	13	NM_001159574	66899	Mm.272468	NM_024183	ENSMUSG00000029227	Fip1l1	1300019H17Rik|Rje	FIP1 like 1 (S. cerevisiae)	protein-coding	0.140000	0.691542	
mm_113587.1	chr13	40887144	40887344	+	1	NA	NA	NA	486	NM_008105	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.035000	0.527363	
mm_1436.1	chr1	67209489	67209689	+	1	NA	NA	NA	86562	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.035000	0.487562	
mm_121655.1	chr14	11161925	11162125	-	1	NA	NA	NA	10	NM_010210	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.050000	0.592040	
mm_26683.1	chr3	156561872	156562072	+	1	NA	NA	NA	178	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.085000	0.686567	
mm_72005.1	chr8	70698436	70698636	+	1	NA	NA	NA	797	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.060000	0.606965	-32(GGGTTTATGAGG,-,0.00)
mm_142608.1	chr17	46812263	46812463	-	1	NA	NA	NA	19050	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.005000	0.422886	
mm_7669.1	chr1	128588616	128588816	-	1	NA	NA	NA	3583	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.000000	0.278607	
mm_144363.1	chr18	20376743	20376943	+	1	NA	NA	NA	114	NM_181682	225256	Mm.269128	NM_181682	ENSMUSG00000061928	Dsg1b	Dsg5|dsg1-beta	desmoglein 1 beta	protein-coding	0.015000	0.467662	
mm_11504.1	chr2	32565661	32565861	+	1	NA	NA	NA	-5097	NM_010073	13481	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0.035000	0.597015	
mm_169828.1	chr16	24529244	24529444	+	1	NA	NA	NA	30	NR_038091	624582	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.045000	0.562189	
mm_40230.1	chr5	37286381	37286581	+	1	NA	NA	NA	40717	NM_007765	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.025000	0.572139	
mm_48337.1	chr5	139129929	139130129	-	1	NA	NA	NA	-277	NM_008923	19085	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	0.040000	0.587065	
mm_39939.1	chr5	31730388	31730588	+	1	NA	NA	NA	32438	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.005000	0.402985	
mm_38303.1	chr4	136896322	136896522	-	1	NA	NA	NA	2422	NM_007572	12259	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	0.030000	0.522388	
mm_117749.1	chr13	95892411	95892611	-	1	NA	NA	NA	-589	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.050000	0.552239	
mm_19641.1	chr2	102835754	102835954	-	1	NA	NA	NA	65811	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.000000	0.482587	
mm_169673.1	chr15	65928882	65929082	-	1	NA	NA	NA	-16695	NM_010953	18256	Mm.41776	NM_010953	ENSMUSG00000015001	Oc90	Ocn-95|PLA2L|Pla2ll|oc95	otoconin 90	protein-coding	0.040000	0.407960	
mm_129432.1	chr15	78494277	78494477	-	1	NA	NA	NA	689	NM_008368	16185	Mm.35287	NM_008368	ENSMUSG00000068227	Il2rb	CD122|IL-15Rbeta|IL15Rbeta|Il-2/15Rbeta|Il-2Rbeta|p70	interleukin 2 receptor, beta chain	protein-coding	0.025000	0.542289	
mm_79713.1	chr9	61372372	61372572	+	1	NA	NA	NA	106	NM_001083927	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.065000	0.562189	
mm_99294.1	chr11	101330769	101330969	+	1	NA	NA	NA	263	NM_009675	11754	Mm.67281	NM_009675	ENSMUSG00000019326	Aoc3	SSAO|VAP1	amine oxidase, copper containing 3	protein-coding	0.015000	0.567164	
mm_145337.1	chr18	56432040	56432240	+	1	NA	NA	NA	8	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.080000	0.676617	
mm_159643.1	chr4	143950707	143950907	-	1	NA	NA	NA	209	NM_001126315	329984		NM_001126315	ENSMUSG00000078511	Pramef25	Gm13109|OTTMUSG00000010441	PRAME family member 25	protein-coding	0.005000	0.532338	
mm_37014.1	chr4	113245213	113245413	-	1	NA	NA	NA	41660	NM_001103199	230622	Mm.291107	NM_001103199	ENSMUSG00000087194	Skint6	OTTMUSG00000008519	selection and upkeep of intraepithelial T cells 6	protein-coding	0.000000	0.348259	
mm_122829.1	chr14	54712027	54712227	-	1	NA	NA	NA	47	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.020000	0.572139	
mm_73189.1	chr8	95352194	95352394	+	1	NA	NA	NA	-2	NM_008609	17388	Mm.217116	NM_008609	ENSMUSG00000031790	Mmp15	AI503551|MT-MMP 2|MT2-MMP	matrix metallopeptidase 15	protein-coding	0.105000	0.731343	-61(GGCCCTTTAAGA,-,0.00),-58(CCTTTAAGAACC,+,0.00)
mm_24251.1	chr3	89177403	89177603	+	1	NA	NA	NA	112	NM_001309909	24045	Mm.257052	NM_011886	ENSMUSG00000028049	Scamp3	Sc3	secretory carrier membrane protein 3	protein-coding	0.075000	0.641791	
mm_94658.1	chr11	17159216	17159416	+	1	NA	NA	NA	18	NM_024459	19058	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0.140000	0.746269	
mm_29212.1	chr3	106790049	106790249	-	1	NA	NA	NA	0	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.010000	0.437811	
mm_90117.1	chr10	117277901	117278101	+	1	NA	NA	NA	4271	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.015000	0.507463	
mm_21901.1	chr2	166156201	166156401	-	1	NA	NA	NA	-618	NM_028072	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.035000	0.592040	
mm_6632.1	chr1	78488758	78488958	-	1	NA	NA	NA	39	NR_102758	23874	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	0.080000	0.631841	
mm_22424.1	chr2	181592662	181592862	-	1	NA	NA	NA	-301	NM_001164597	269401	Mm.386888	NM_001164597	ENSMUSG00000000823	Zfp512b	Gm632|Znf512b	zinc finger protein 512B	protein-coding	0.150000	0.781095	
mm_52278.1	chr6	108660340	108660540	+	1	NA	NA	NA	-189	NM_011498	20893	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0.075000	0.646766	
mm_92633.1	chr10	80329313	80329513	-	1	NA	NA	NA	60	NM_008793	18551	Mm.299916	NM_008793	ENSMUSG00000020131	Pcsk4	AI647044|L21221|NEC 3|NEC3|PC4|SPC5	proprotein convertase subtilisin/kexin type 4	protein-coding	0.035000	0.656716	
mm_27990.1	chr3	82145646	82145846	-	1	NA	NA	NA	131	NM_021896	60596	Mm.143831	NM_021896	ENSMUSG00000033910	Gucy1a3	1200016O07Rik|sGC-alpha1	guanylate cyclase 1, soluble, alpha 3	protein-coding	0.050000	0.636816	
mm_141178.1	chr17	26841422	26841622	-	1	NA	NA	NA	43	NM_008700	18091	Mm.41974	NM_008700	ENSMUSG00000015579	Nkx2-5	Csx|Nkx-2.5|Nkx2.5|tinman	NK2 homeobox 5	protein-coding	0.080000	0.686567	
mm_133271.1	chr16	77374618	77374818	+	1	NA	NA	NA	45390	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.015000	0.388060	
mm_46525.1	chr5	105400009	105400209	-	1	NA	NA	NA	-15666	NM_001033550	433926	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0.020000	0.393035	-77(TTTTATAAAGCG,+,0.00)
mm_37132.1	chr4	116708448	116708648	-	1	NA	NA	NA	-163	NM_025962	67096	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0.075000	0.552239	
mm_81540.1	chr9	110245050	110245250	+	1	NA	NA	NA	1367	NM_001166273	29873	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding	0.135000	0.781095	
mm_144577.1	chr18	31910705	31910905	+	1	NA	NA	NA	1098	NM_026006	67158	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	0.180000	0.776119	
mm_47040.1	chr5	116024154	116024354	-	1	NA	NA	NA	174	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.140000	0.736318	
mm_42505.1	chr5	115499650	115499850	+	1	NA	NA	NA	-6926	NM_011223	19303	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0.000000	0.522388	-34(GCTTTAAAACCC,+,0.00)
mm_51323.1	chr6	72347240	72347440	+	1	NA	NA	NA	23	NM_026696	68364	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	0.110000	0.636816	
mm_89796.1	chr10	102511994	102512194	+	1	NA	NA	NA	-128	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding	0.005000	0.537313	
mm_133262.1	chr16	77340488	77340688	+	1	NA	NA	NA	11260	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.005000	0.388060	
mm_116190.1	chr13	31430961	31431161	-	1	NA	NA	NA	-127109	NM_008239	15220	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	0.010000	0.562189	
mm_132404.1	chr16	35001599	35001799	+	1	NA	NA	NA	-20722	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.005000	0.437811	
mm_141104.1	chr17	26021701	26021901	-	1	NA	NA	NA	59	NM_153140	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.015000	0.537313	
mm_32607.1	chr4	112072548	112072748	+	1	NA	NA	NA	632	NM_001347180	320640	Mm.253775	NM_178786	ENSMUSG00000055960	Skint4	9530098N22Rik	selection and upkeep of intraepithelial T cells 4	protein-coding	0.010000	0.412935	
mm_155367.1	chrX	71214942	71215142	+	1	NA	NA	NA	36	NM_001164193	17772	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	0.075000	0.691542	
mm_77756.1	chr8	128680559	128680759	-	1	NA	NA	NA	-4995	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.005000	0.422886	
mm_110491.1	chr12	52602230	52602430	-	1	NA	NA	NA	-8	NR_045910	73278	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0.025000	0.552239	
mm_19692.1	chr2	103485048	103485248	-	1	NA	NA	NA	5	NM_009804	12359	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0.060000	0.636816	
mm_169162.1	chr13	65415272	65415472	+	1	NA	NA	NA	136518	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.000000	0.477612	
mm_83119.1	chr9	40403587	40403787	-	1	NA	NA	NA	52077	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.000000	0.402985	
mm_119369.1	chr14	41122465	41122665	+	1	NA	NA	NA	-9223	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.025000	0.507463	
mm_139736.1	chr17	58996161	58996361	+	1	NA	NA	NA	10	NM_001331155	75039	Mm.444693	NM_001331155		Nudt12os	4930505H01Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12, opposite strand	protein-coding	0.005000	0.388060	
mm_102460.1	chr11	59839711	59839911	-	1	NA	NA	NA	-44	NM_011991	26572	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	0.075000	0.636816	
mm_41422.1	chr5	90891737	90891937	+	1	NA	NA	NA	592	NM_008176	14825	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.015000	0.422886	
mm_81682.1	chr9	111059501	111059701	+	1	NA	NA	NA	-2083	NM_001302376	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.015000	0.487562	-34(ACTTTTAAAAGG,-,0.00),-33(CTTTTAAAAGGA,+,0.00)
mm_80483.1	chr9	78230570	78230770	+	1	NA	NA	NA	1	NM_008181	14857	Mm.467426	NM_008181	ENSMUSG00000074183	Gsta1	Gst2-1|OTTMUSG00000031890	glutathione S-transferase, alpha 1 (Ya)	protein-coding	0.005000	0.517413	
mm_77094.1	chr8	110805808	110806008	-	1	NA	NA	NA	16	NM_029646	76527	Mm.77697	NM_029646	ENSMUSG00000031750	Il34	2010004A03Rik|AI593503	interleukin 34	protein-coding	0.025000	0.597015	
mm_747.1	chr1	43542429	43542629	+	1	NA	NA	NA	96778	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.015000	0.482587	
mm_67448.1	chr7	80391469	80391669	-	1	NA	NA	NA	-3623	NM_010194	14159	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.025000	0.552239	
mm_111542.1	chr12	100887977	100888177	-	1	NA	NA	NA	11447	NM_001177674	238377	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.025000	0.512438	
mm_112958.1	chr13	21179888	21180088	+	1	NA	NA	NA	57	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.065000	0.621891	-63(TACTTTTAAAGG,-,0.00),-62(ACTTTTAAAGGA,+,0.00),-61(CTTTTAAAGGAG,+,0.00)
mm_20808.1	chr2	144331282	144331482	-	1	NA	NA	NA	-20	NM_152947	107586	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0.110000	0.656716	
mm_89987.1	chr10	111996043	111996243	+	1	NA	NA	NA	1121	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.010000	0.383085	
mm_34218.1	chr4	140971888	140972088	+	1	NA	NA	NA	10717	NM_023374	67680	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.045000	0.577114	
mm_100243.1	chr11	117266186	117266386	+	1	NA	NA	NA	40	NM_001113487	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.065000	0.706468	
mm_118712.1	chr14	22185029	22185229	+	1	NA	NA	NA	165417	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.000000	0.323383	83(GCCTTTAAAAAT,-,0.00)
mm_36018.1	chr4	56960218	56960418	-	1	NA	NA	NA	-12889	NM_175518	242474	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	0.005000	0.393035	-99(GCTTAAAAAGAA,+,0.00)
mm_80044.1	chr9	69239025	69239225	+	1	NA	NA	NA	-50716	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.005000	0.407960	
mm_879.1	chr1	52177277	52177477	+	1	NA	NA	NA	55855	NM_001081081	14660	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.000000	0.393035	-84(TCTTTTAAGAGC,+,0.00),-83(CTTTTAAGAGCT,+,0.00)
mm_40007.1	chr5	33018670	33018870	+	1	NA	NA	NA	-46	NM_011738	22629	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.150000	0.736318	-66(GGCTATTTATAG,-,0.00),-44(CACCTTAAAAAG,-,0.00),-42(CCTTAAAAAGAC,+,0.00)
mm_73697.1	chr8	111643373	111643573	+	1	NA	NA	NA	30	NM_011742	22640	Mm.4184	NM_011742	ENSMUSG00000055835	Zfp1	Fnp-1|Zfp-1|mkr-1	zinc finger protein 1	protein-coding	0.085000	0.621891	
mm_126234.1	chr15	78967234	78967434	+	1	NA	NA	NA	-15722	NM_001024716	110253	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.040000	0.597015	
mm_145958.1	chr18	67774781	67774981	+	1	NA	NA	NA	5	NM_001039088	72124	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	0.155000	0.761194	
mm_59243.1	chr7	24780850	24781050	+	1	NA	NA	NA	3746	NM_007675	26366	Mm.30300	NM_007675	ENSMUSG00000054169	Ceacam10	Bgp3|Cea10	carcinoembryonic antigen-related cell adhesion molecule 10	protein-coding	0.050000	0.522388	
mm_146669.1	chr18	12232625	12232825	-	1	NA	NA	NA	3661	NM_008720	18145	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	Niemann-Pick type C1	protein-coding	0.010000	0.507463	
mm_74092.1	chr8	122567941	122568141	+	1	NA	NA	NA	26	NM_026014	67177	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0.120000	0.641791	
mm_160116.1	chr7	27233304	27233504	+	1	NA	NA	NA	391	NM_133770	76889	Mm.124728	NM_133770	ENSMUSG00000003762	Coq8b	0610012P18Rik|Adck4	coenzyme Q8B	protein-coding	0.020000	0.517413	
mm_10.1	chr1	4828496	4828696	+	1	NA	NA	NA	20703	NM_008866	18777	Mm.299955	NM_008866	ENSMUSG00000025903	Lypla1	Pla1a	lysophospholipase 1	protein-coding	0.005000	0.353234	
mm_45962.1	chr5	90464797	90464997	-	1	NA	NA	NA	4027	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.005000	0.447761	
mm_43794.1	chr5	142812066	142812266	+	1	NA	NA	NA	5221	NM_178242	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.015000	0.517413	
mm_65217.1	chr7	19698294	19698494	-	1	NA	NA	NA	4	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.035000	0.562189	
mm_89544.1	chr10	94575215	94575415	+	1	NA	NA	NA	58	NM_001168684	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.020000	0.547264	
mm_25207.1	chr3	103832465	103832665	+	1	NA	NA	NA	-131	NM_001142959	229672	Mm.297245	NM_001142959	ENSMUSG00000044165	Bcl2l15	Bfk|Gm566	BCLl2-like 15	protein-coding	0.000000	0.368159	
mm_114120.1	chr13	55152717	55152917	+	1	NA	NA	NA	-1	NM_008011	14186	Mm.276715	NM_008011	ENSMUSG00000005320	Fgfr4	Fgfr-4	fibroblast growth factor receptor 4	protein-coding	0.110000	0.746269	
mm_28379.1	chr3	89963230	89963430	-	1	NA	NA	NA	2	NM_001081182	54667	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	0.110000	0.771144	
mm_154051.1	chr19	55102947	55103147	-	1	NA	NA	NA	-3600	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.015000	0.422886	
mm_53708.1	chr6	143171349	143171549	+	1	NA	NA	NA	4219	NM_029250	75320	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0.005000	0.452736	
mm_58117.1	chr6	138426988	138427188	-	1	NA	NA	NA	3983	NR_126072	319702	Mm.403785	NR_126072	ENSMUSG00000089957	A830011K09Rik	-	RIKEN cDNA A830011K09 gene	ncRNA	0.010000	0.442786	
mm_35843.1	chr4	48279409	48279609	-	1	NA	NA	NA	80	NM_029572	76299	Mm.317701	NM_029572	ENSMUSG00000028343	Erp44	1110001E24Rik|AI849526|AL033348|Txndc4	endoplasmic reticulum protein 44	protein-coding	0.095000	0.671642	4(CCTTTTCTAGCC,+,0.00)
mm_1659.1	chr1	74713184	74713384	+	1	NA	NA	NA	-251	NM_024264	104086	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0.035000	0.582090	
mm_68250.1	chr7	105568561	105568761	-	1	NA	NA	NA	116	NM_001310600	11785	Mm.38469	NM_009685	ENSMUSG00000037032	Apbb1	Fe65|Rir	amyloid beta (A4) precursor protein-binding, family B, member 1	protein-coding	0.010000	0.621891	
mm_125852.1	chr15	74989139	74989339	+	1	NA	NA	NA	-5809	NM_020498	57248	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	0.015000	0.497512	
mm_151827.1	chr19	5658149	5658349	-	1	NA	NA	NA	5458	NM_001164482	20469	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0.010000	0.467662	
mm_13379.1	chr2	103795893	103796093	+	1	NA	NA	NA	1085	NM_001111290	53872	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	0.035000	0.606965	
mm_105515.1	chr11	106267532	106267732	-	1	NA	NA	NA	0	NM_031878	83796	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	0.030000	0.606965	
mm_125713.1	chr15	68928318	68928518	+	1	NA	NA	NA	-2	NM_010158	13992	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding	0.175000	0.786070	
mm_146223.1	chr18	77065411	77065611	+	1	NA	NA	NA	-169	NM_001164170	17344	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0.175000	0.835821	
mm_77244.1	chr8	115705255	115705455	-	1	NA	NA	NA	1539	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.010000	0.388060	
mm_58326.1	chr6	146515808	146516008	-	1	NA	NA	NA	-13685	NM_019923	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.000000	0.477612	-35(GGCTATAAAACC,-,0.00)
mm_98907.1	chr11	98026888	98027088	+	1	NA	NA	NA	64	NM_009078	19921	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0.090000	0.686567	
mm_149950.1	chr19	27428742	27428942	+	1	NA	NA	NA	1066	NM_177474	52874	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e|Kiaa0020	pumilio RNA-binding family member 3	protein-coding	0.015000	0.452736	
mm_83784.1	chr9	52164654	52164854	-	1	NA	NA	NA	3357	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.005000	0.432836	
mm_35939.1	chr4	53043192	53043392	-	1	NA	NA	NA	31412	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.005000	0.378109	
mm_146790.1	chr18	20114703	20114903	-	1	NA	NA	NA	-30	NM_013504	13505	Mm.33740	NM_013504	ENSMUSG00000044322	Dsc1	1110020A10Rik|AI507491	desmocollin 1	protein-coding	0.005000	0.542289	
mm_125734.1	chr15	73423204	73423404	+	1	NA	NA	NA	-113	NM_001130409	14083	Mm.254494	NM_007982	ENSMUSG00000022607	Ptk2	FAK|FRNK|Fadk|mKIAA4203|p125FAK	PTK2 protein tyrosine kinase 2	protein-coding	0.140000	0.716418	
mm_38250.1	chr4	136687895	136688095	-	1	NA	NA	NA	65374	NM_001243262	242707	Mm.448979	NM_001243262	ENSMUSG00000070683	Lactbl1	-	lactamase, beta-like 1	protein-coding	0.015000	0.572139	
mm_44960.1	chr5	36711906	36712106	-	1	NA	NA	NA	-15985	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.005000	0.512438	
mm_36312.1	chr4	69758439	69758639	-	1	NA	NA	NA	651896	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.020000	0.447761	
mm_54538.1	chr6	36741303	36741503	-	1	NA	NA	NA	69958	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.010000	0.472637	
mm_91787.1	chr10	53348413	53348613	-	1	NA	NA	NA	10827	NM_001141927	18821	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0.015000	0.472637	
mm_171282.1	chr3	89246848	89247048	-	1	NA	NA	NA	475	NM_001310625	66059	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	0.045000	0.606965	
mm_35440.1	chr4	40063702	40063902	-	1	NA	NA	NA	-79463	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.000000	0.427861	
mm_172903.1	chr9	58582806	58583006	+	1	NA	NA	NA	666	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.055000	0.606965	
mm_143657.1	chr17	79713591	79713791	-	1	NA	NA	NA	1350	NM_009994	13078	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0.100000	0.646766	
mm_138942.1	chr17	44038773	44038973	+	1	NA	NA	NA	-39929	NM_001168620	83965	Mm.30145	NM_032003	ENSMUSG00000023960	Enpp5	AW061004|D17Abb1e|E-NPP 5	ectonucleotide pyrophosphatase/phosphodiesterase 5	protein-coding	0.020000	0.383085	
mm_169119.1	chr13	51123018	51123218	+	1	NA	NA	NA	-11200	NM_011462	20729	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0.015000	0.457711	
mm_164158.1	chr15	70514894	70515094	-	1	NA	NA	NA	590761	NR_045071	100503580	Mm.404646	NR_045071		Gm19782	-	predicted gene, 19782	ncRNA	0.000000	0.427861	
mm_131545.1	chr16	17832586	17832786	+	1	NA	NA	NA	-433	NR_027959	433004	Mm.310200	NM_001002790		B830017H08Rik	-	RIKEN cDNA B830017H08 gene	ncRNA	0.010000	0.462687	
mm_22105.1	chr2	169962979	169963179	-	1	NA	NA	NA	108	NR_131974	446211	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0.020000	0.512438	76(TTTTATATAGCG,+,0.00)
mm_153736.1	chr19	44545721	44545921	-	1	NA	NA	NA	27	NM_001033343	240667	Mm.329873	NM_001033343	ENSMUSG00000051984	Sec31b	Gm341|Sec31l2	Sec31 homolog B (S. cerevisiae)	protein-coding	0.095000	0.721393	
mm_63707.1	chr7	130662906	130663106	+	1	NA	NA	NA	-29550	NM_001347637	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.015000	0.472637	
mm_40064.1	chr5	34169648	34169848	+	1	NA	NA	NA	-222	NM_001289803	272158	Mm.319286	NM_181857	ENSMUSG00000045102	Poln	POL4P	DNA polymerase N	protein-coding	0.045000	0.592040	
mm_145479.1	chr18	60376515	60376715	+	1	NA	NA	NA	586	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.015000	0.542289	
mm_161539.1	chr15	102977164	102977364	+	1	NA	NA	NA	232	NM_008272	15427	Mm.4765	NM_008272	ENSMUSG00000036139	Hoxc9	Hox-3.2	homeobox C9	protein-coding	0.065000	0.671642	
mm_43836.1	chr5	142972605	142972805	+	1	NA	NA	NA	12350	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.015000	0.492537	
mm_82716.1	chr9	24696183	24696383	-	1	NA	NA	NA	10	NM_001166207	320752	Mm.46158	NM_001166207	ENSMUSG00000085576	Dpy19l2	4932443J21Rik|Gm18376	dpy-19-like 2 (C. elegans)	protein-coding	0.085000	0.656716	
mm_5737.1	chr1	45339837	45340037	-	1	NA	NA	NA	28399	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.000000	0.467662	
mm_31151.1	chr4	43406172	43406372	+	1	NA	NA	NA	-230	NM_199057	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.025000	0.587065	
mm_66875.1	chr7	57509346	57509546	-	1	NA	NA	NA	563	NM_176942	110886	Mm.273114	NM_176942	ENSMUSG00000055078	Gabra5	A230018I05Rik	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5	protein-coding	0.135000	0.756219	
mm_146203.1	chr18	76268372	76268572	+	1	NA	NA	NA	6027	NM_001311070	17126	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0.000000	0.363184	
mm_143760.1	chr17	81622364	81622564	-	1	NA	NA	NA	115923	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.000000	0.313433	
mm_40919.1	chr5	75734748	75734948	+	1	NA	NA	NA	159857	NM_021099	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	KIT proto-oncogene receptor tyrosine kinase	protein-coding	0.040000	0.582090	
mm_96692.1	chr11	69591399	69591599	+	1	NA	NA	NA	11140	NM_001127233	22059	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.010000	0.567164	
mm_146843.1	chr18	23041556	23041756	-	1	NA	NA	NA	-3	NM_199024	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding	0.060000	0.696517	
mm_64123.1	chr7	141131260	141131460	+	1	NA	NA	NA	74	NM_013782	27388	Mm.293591	NM_013782	ENSMUSG00000025495	Ptdss2	AI481134|AI988017|PSS2	phosphatidylserine synthase 2	protein-coding	0.120000	0.751244	
mm_52621.1	chr6	117173949	117174149	+	1	NA	NA	NA	5514	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.035000	0.601990	
mm_67345.1	chr7	79825241	79825441	-	1	NA	NA	NA	14614	NM_008589	17293	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0.030000	0.587065	
mm_20705.1	chr2	132945829	132946029	-	1	NA	NA	NA	107	NM_198029	241639	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0.005000	0.552239	
mm_80658.1	chr9	90054437	90054637	+	1	NA	NA	NA	270	NM_001312649	13036	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.065000	0.681592	
mm_79681.1	chr9	59751159	59751359	+	1	NA	NA	NA	85	NM_173018	270163	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0.100000	0.726368	
mm_142190.1	chr17	36893932	36894132	-	1	NA	NA	NA	-3907	NM_001172168	195359	Mm.32606	NM_001033235	ENSMUSG00000073399	Trim40	Gm319|Gm35|Gm865	tripartite motif-containing 40	protein-coding	0.015000	0.383085	-34(CACTTTAAAAAG,-,0.00),-32(CTTTAAAAAGAC,+,0.00)
mm_157024.1	chrX	7898546	7898746	-	1	NA	NA	NA	354	NM_001252528	54633	Mm.14616	NM_019478	ENSMUSG00000031157	Pqbp1	PQBP-1|Sfc2|npw38	polyglutamine binding protein 1	protein-coding	0.035000	0.527363	
mm_111205.1	chr12	84361720	84361920	-	1	NA	NA	NA	1	NM_172581	217705	Mm.259468	NM_172581	ENSMUSG00000021234	Fam161b	9330169D17|9830169C18Rik	family with sequence similarity 161, member B	protein-coding	0.045000	0.547264	
mm_112291.1	chr12	114513715	114513915	-	1	NA	NA	NA	-121	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.010000	0.368159	-11(ACCCTTAAAAAC,-,0.00),-10(CCCTTAAAAACC,+,0.00),-9(CCTTAAAAACCG,+,0.00)
mm_28095.1	chr3	85894813	85895013	-	1	NA	NA	NA	-7395	NM_177130	320302	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding	0.000000	0.437811	
mm_125351.1	chr15	39391471	39391671	+	1	NA	NA	NA	193285	NM_053271	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.005000	0.388060	
mm_78008.1	chr9	12865263	12865463	+	1	NA	NA	NA	240492	NR_040755	78219	Mm.414868	NR_040755	ENSMUSG00000111830	4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA	0.005000	0.393035	
mm_73903.1	chr8	119446747	119446947	+	1	NA	NA	NA	128	NM_054095	117148	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	0.110000	0.776119	
mm_70727.1	chr8	18595455	18595655	+	1	NA	NA	NA	382	NM_173189	244329	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT	microcephaly, primary autosomal recessive 1	protein-coding	0.090000	0.691542	
mm_70382.1	chr8	10249250	10249450	+	1	NA	NA	NA	95439	NM_001319151	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.045000	0.577114	
mm_105923.1	chr11	115062015	115062215	-	1	NA	NA	NA	-76	NM_172050	217306	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.010000	0.457711	
mm_25700.1	chr3	122419647	122419847	+	1	NA	NA	NA	-33	NM_013867	29815	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0.040000	0.517413	-86(CCTTTTAAATTG,+,0.00)
mm_170380.1	chr1	85600640	85600840	+	1	NA	NA	NA	37	NM_001013817	434484	Mm.445821	NM_001013817	ENSMUSG00000070031	Sp140	-	Sp140 nuclear body protein	protein-coding	0.015000	0.502488	
mm_74454.1	chr8	4214250	4214450	-	1	NA	NA	NA	2962	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.020000	0.567164	
mm_162981.1	chr11	21286400	21286600	+	1	NA	NA	NA	47468	NM_001290628	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.015000	0.452736	
mm_99941.1	chr11	111065835	111066035	+	1	NA	NA	NA	-229	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.030000	0.636816	
mm_4934.1	chr1	191098321	191098521	+	1	NA	NA	NA	7	NM_030060	381319	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.135000	0.771144	
mm_44995.1	chr5	38159408	38159608	-	1	NA	NA	NA	-41	NM_010942	18196	Mm.7414	NM_010942	ENSMUSG00000029126	Nsg1	Neep21|m234|p21	neuron specific gene family member 1	protein-coding	0.170000	0.766169	
mm_59122.1	chr7	19887246	19887446	+	1	NA	NA	NA	619	NM_177036	319930	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.000000	0.517413	
mm_150476.1	chr19	38836603	38836803	+	1	NA	NA	NA	124	NM_145952	209478	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	0.120000	0.751244	
mm_107576.1	chr12	44438984	44439184	+	1	NA	NA	NA	110199	NM_001146031	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.020000	0.492537	
mm_128937.1	chr15	74709184	74709384	-	1	NA	NA	NA	38	NM_008415	16469	Mm.87052	NM_008415	ENSMUSG00000046380	Jrk	-	jerky	protein-coding	0.110000	0.716418	
mm_141819.1	chr17	34615685	34615885	-	1	NA	NA	NA	186	NM_152922	81701	Mm.231343	NM_152922	ENSMUSG00000015467	Egfl8	Ng3	EGF-like domain 8	protein-coding	0.005000	0.606965	
mm_128289.1	chr15	37232816	37233016	-	1	NA	NA	NA	-120	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	0.050000	0.606965	
mm_110895.1	chr12	75596128	75596328	-	1	NA	NA	NA	-28	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.100000	0.651741	
mm_10785.1	chr2	24345189	24345389	+	1	NA	NA	NA	-2	NM_001159562	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.020000	0.447761	
mm_165352.1	chr2	120501165	120501365	+	1	NA	NA	NA	24356	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.030000	0.597015	
mm_166110.1	chr4	148130748	148130948	+	1	NA	NA	NA	-72	NM_001305420	71890	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding	0.140000	0.791045	
mm_44780.1	chr5	32132917	32133117	-	1	NA	NA	NA	-3455	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.060000	0.656716	
mm_131151.1	chr16	6816024	6816224	+	1	NA	NA	NA	-253711	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.005000	0.452736	
mm_104781.1	chr11	98546561	98546761	-	1	NA	NA	NA	-630	NM_011771	22780	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.015000	0.432836	
mm_25646.1	chr3	121387697	121387897	+	1	NA	NA	NA	-38744	NM_028044	71994	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0.005000	0.482587	-31(ACCTATAAAAGC,-,0.00)
mm_12216.1	chr2	67565627	67565827	+	1	NA	NA	NA	-109730	NR_106083	102465706		NR_106083	ENSMUSG00000098299	Mir7224	Gm27971|mmu-mir-7224	microRNA 7224	ncRNA	0.175000	0.781095	
mm_5967.1	chr1	56978439	56978639	-	1	NA	NA	NA	7070	NR_024325	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0.045000	0.517413	
mm_169778.1	chr16	11143817	11144017	+	1	NA	NA	NA	-9385	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.030000	0.497512	
mm_64601.1	chr7	3212492	3212692	-	1	NA	NA	NA	-6034	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.005000	0.482587	
mm_40213.1	chr5	37050760	37050960	+	1	NA	NA	NA	3	NM_178394	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0.010000	0.572139	
mm_59042.1	chr7	19345041	19345241	+	1	NA	NA	NA	70	NM_007948	13870	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.065000	0.601990	
mm_1088.1	chr1	59606670	59606870	+	1	NA	NA	NA	64064	NM_009460	22218	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0.040000	0.547264	
mm_168492.1	chr11	50405567	50405767	-	1	NA	NA	NA	25444	NM_172557	216724	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	0.015000	0.402985	
mm_99589.1	chr11	104309603	104309803	+	1	NA	NA	NA	78267	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.005000	0.527363	
mm_156174.1	chrX	130329983	130330183	+	1	NA	NA	NA	580341	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.015000	0.417910	
mm_145937.1	chr18	67289147	67289347	+	1	NA	NA	NA	24	NM_053261	114663	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0.105000	0.726368	
mm_166128.1	chr4	154900208	154900408	+	1	NA	NA	NA	-1265	NM_025582	66469	Mm.41868	NM_025582	ENSMUSG00000029059	Fam213b	2810405K02Rik|AI836168|PM/PGFS	family with sequence similarity 213, member B	protein-coding	0.015000	0.507463	
mm_105850.1	chr11	113709957	113710157	-	1	NA	NA	NA	-40	NM_029794	52670	Mm.229207	NM_026682	ENSMUSG00000018727	Cpsf4l	0610010C04Rik|1500000C01Rik|D11Ertd636e	cleavage and polyadenylation specific factor 4-like	protein-coding	0.015000	0.572139	6(GTCTAGAAAAGA,-,0.00)
mm_31830.1	chr4	70378096	70378296	+	1	NA	NA	NA	32239	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.025000	0.402985	
mm_168588.1	chr1	173535854	173536054	-	1	NA	NA	NA	3	NM_001024721	545384	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	0.015000	0.437811	
mm_90413.1	chr10	127421092	127421292	+	1	NA	NA	NA	325	NM_001168293	71750	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.015000	0.497512	
mm_88592.1	chr10	79755015	79755215	+	1	NA	NA	NA	-4	NM_023304	67112	Mm.154211	NM_023304	ENSMUSG00000020327	Fgf22	2210414E06Rik|FGF-22	fibroblast growth factor 22	protein-coding	0.120000	0.741294	
mm_1495.1	chr1	71888383	71888583	+	1	NA	NA	NA	371	NR_027659	667931	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	0.025000	0.527363	41(ACGTATTAAAGC,-,0.00)
mm_40008.1	chr5	33018750	33018950	+	1	NA	NA	NA	34	NM_011738	22629	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.170000	0.810945	
mm_19342.1	chr2	90745179	90745379	-	1	NA	NA	NA	-91	NM_018828	55935	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0.050000	0.507463	
mm_117902.1	chr13	99429796	99429996	-	1	NA	NA	NA	-17070	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.020000	0.522388	
mm_130668.1	chr15	100674479	100674679	-	1	NA	NA	NA	-5079	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.010000	0.517413	
mm_156945.1	chrX	169979032	169979232	+	1	NA	NA	NA	-215	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.020000	0.378109	
mm_141039.1	chr17	25273774	25273974	-	1	NA	NA	NA	40	NM_001177609	22196	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|F830028O17Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	0.060000	0.577114	
mm_139917.1	chr17	70963730	70963930	+	1	NA	NA	NA	26686	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.060000	0.562189	
mm_150992.1	chr19	46599016	46599216	+	1	NA	NA	NA	10	NM_146099	226178	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.060000	0.681592	
mm_15813.1	chr2	164502487	164502687	+	1	NA	NA	NA	5062	NM_133779	78928	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	0.045000	0.582090	-14(CCTTATCGGGCC,+,0.00)
mm_77248.1	chr8	115705549	115705749	-	1	NA	NA	NA	1245	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.040000	0.606965	
mm_9307.1	chr1	171640928	171641128	-	1	NA	NA	NA	872	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.020000	0.447761	
mm_120152.1	chr14	60634685	60634885	+	1	NA	NA	NA	80	NM_001033272	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.095000	0.701493	
mm_162456.1	chr1	128373410	128373610	+	1	NA	NA	NA	-13805	NM_001313695	17219	Mm.4933	NM_008567	ENSMUSG00000026355	Mcm6	ASP-l1|D1Wsu22e|Mcmd6	minichromosome maintenance complex component 6	protein-coding	0.000000	0.422886	-97(CATTATAAAAAG,-,0.00)
mm_136065.1	chr16	84734418	84734618	-	1	NA	NA	NA	784	NM_017404	27393	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	0.060000	0.477612	
mm_34125.1	chr4	139257013	139257213	+	1	NA	NA	NA	53587	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.030000	0.517413	
mm_75377.1	chr8	45358678	45358878	-	1	NA	NA	NA	23513	NM_153535	212326	Mm.51259	NM_153535	ENSMUSG00000070044	Fam149a	AW213256|mKIAA4166	family with sequence similarity 149, member A	protein-coding	0.055000	0.656716	
mm_77660.1	chr8	124663087	124663287	-	1	NA	NA	NA	182	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding	0.185000	0.781095	
mm_8096.1	chr1	135847666	135847866	-	1	NA	NA	NA	6905	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.015000	0.577114	
mm_19355.1	chr2	91070224	91070424	-	1	NA	NA	NA	-9	NM_001290765	68427	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.145000	0.771144	
mm_3228.1	chr1	135849250	135849450	+	1	NA	NA	NA	8489	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.020000	0.532338	
mm_15420.1	chr2	156840904	156841104	+	1	NA	NA	NA	997	NM_173396	228839	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0.090000	0.656716	
mm_167973.1	chrX	155712122	155712322	-	1	NA	NA	NA	-88895	NM_001093750	211612	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	0.005000	0.412935	
mm_3648.1	chr1	153073612	153073812	+	1	NA	NA	NA	112735	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.030000	0.457711	
mm_140778.1	chr17	17877015	17877215	-	1	NA	NA	NA	6824	NM_013521	14293	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0.015000	0.487562	
mm_68369.1	chr7	107757902	107758102	-	1	NA	NA	NA	30	NM_001205227	320635	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	0.060000	0.592040	
mm_38850.1	chr4	149313881	149314081	-	1	NA	NA	NA	-6248	NM_001290995	16561	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0.035000	0.537313	
mm_83703.1	chr9	50693687	50693887	-	1	NA	NA	NA	-34007	NM_145614	235339	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	0.025000	0.517413	
mm_6804.1	chr1	84155251	84155451	-	1	NA	NA	NA	63610	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.492537	
mm_70583.1	chr8	13167787	13167987	+	1	NA	NA	NA	8726	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.025000	0.497512	
mm_92603.1	chr10	80105502	80105702	-	1	NA	NA	NA	-2900	NM_183426	216161	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch homolog 2 (Drosophila)	protein-coding	0.015000	0.616915	
mm_28230.1	chr3	88455054	88455254	-	1	NA	NA	NA	607	NM_013658	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.010000	0.512438	
mm_2755.1	chr1	129273377	129273577	+	1	NA	NA	NA	173	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	0.065000	0.611940	
mm_90223.1	chr10	121034109	121034309	+	1	NA	NA	NA	205	NM_011915	24117	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0.060000	0.636816	
mm_147999.1	chr18	67680790	67680990	-	1	NA	NA	NA	39291	NM_134138	107047	Mm.150701	NM_134138	ENSMUSG00000024537	Psmg2	1700017I17Rik|AW545363|Clast3|Tnfsf5ip1	proteasome (prosome, macropain) assembly chaperone 2	protein-coding	0.020000	0.457711	
mm_160394.1	chr8	60655025	60655225	+	1	NA	NA	NA	21	NM_001177881	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	0.010000	0.452736	
mm_32293.1	chr4	103114850	103115050	+	1	NA	NA	NA	560	NM_001286222	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.055000	0.641791	
mm_143422.1	chr17	70845072	70845272	-	1	NA	NA	NA	1605	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.035000	0.497512	
mm_144713.1	chr18	35046566	35046766	+	1	NA	NA	NA	-72246	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.020000	0.542289	
mm_117631.1	chr13	92131728	92131928	-	1	NA	NA	NA	-143786	NM_009027	19418	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0.105000	0.641791	-87(CCCTTTAAATCG,+,0.00)
mm_138041.1	chr17	33920402	33920602	+	1	NA	NA	NA	1024	NM_009318	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.065000	0.597015	40(TAGTTTTTAAGG,-,0.00)
mm_172599.1	chr8	15519746	15519946	+	1	NA	NA	NA	462193	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.070000	0.517413	
mm_31945.1	chr4	86689502	86689702	+	1	NA	NA	NA	-19543	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.015000	0.482587	
mm_109580.1	chr12	112588698	112588898	+	1	NA	NA	NA	14	NM_198411	70435	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.130000	0.776119	
mm_146836.1	chr18	22850649	22850849	-	1	NA	NA	NA	187914	NM_001161483	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding	0.010000	0.482587	
mm_61547.1	chr7	79363532	79363732	+	1	NA	NA	NA	23395	NM_020599	19771	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	0.015000	0.497512	32(CAGTTTTAAAAG,-,0.00)
mm_63203.1	chr7	125829439	125829639	+	1	NA	NA	NA	121663	NM_001081022	233865	Mm.274389	NM_001081022	ENSMUSG00000032743	D430042O09Rik	Kiaa0556	RIKEN cDNA D430042O09 gene	protein-coding	0.010000	0.522388	
mm_156812.1	chrX	164090095	164090295	+	1	NA	NA	NA	8	NM_020626	57394	Mm.143766	NM_020626	ENSMUSG00000015401	Tmem27	0610008J07Rik|NX-17|NX17	transmembrane protein 27	protein-coding	0.040000	0.437811	-49(CCTTTTAGATGG,+,0.00)
mm_155252.1	chrX	57223880	57224080	+	1	NA	NA	NA	11837	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.015000	0.467662	
mm_144326.1	chr18	12955736	12955936	+	1	NA	NA	NA	-13995	NM_207530	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.045000	0.582090	
mm_143664.1	chr17	79857245	79857445	-	1	NA	NA	NA	38778	NM_178050	56298	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.010000	0.338308	
mm_115421.1	chr13	117218292	117218492	+	1	NA	NA	NA	-2181	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.005000	0.517413	-33(CACTATAAAAGG,-,0.00)
mm_21702.1	chr2	164568402	164568602	-	1	NA	NA	NA	4954	NM_001177401	629747	Mm.234248	NM_001177401	ENSMUSG00000074596	Spint3	Gm14315|OTTMUSG00000016288	serine peptidase inhibitor, Kunitz type, 3	protein-coding	0.015000	0.467662	
mm_53272.1	chr6	128485499	128485699	+	1	NA	NA	NA	41121	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.020000	0.437811	-21(ACTTTTATGGGG,+,0.00)
mm_165592.1	chr3	35937288	35937488	-	1	NA	NA	NA	-4422	NM_001205361	114893	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.010000	0.462687	
mm_124826.1	chr15	9092109	9092309	+	1	NA	NA	NA	20949	NM_001040395	68646	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.005000	0.373134	
mm_23096.1	chr3	37063599	37063799	+	1	NA	NA	NA	43	NM_009350	21744	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	0.125000	0.751244	
mm_120486.1	chr14	65976842	65977042	+	1	NA	NA	NA	8459	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.020000	0.552239	
mm_10429.1	chr2	14073516	14073716	+	1	NA	NA	NA	318	NR_038162	70957	Mm.399049	NR_038162	ENSMUSG00000086657	Stamos	4921530L18Rik	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand	ncRNA	0.050000	0.597015	
mm_128943.1	chr15	74734263	74734463	-	1	NA	NA	NA	-50	NM_026671	68311	Mm.306880	NM_026671	ENSMUSG00000022595	Lypd2	0610005K03Rik|Lypdc2|VLL	Ly6/Plaur domain containing 2	protein-coding	0.020000	0.631841	
mm_80429.1	chr9	77921425	77921625	+	1	NA	NA	NA	4160	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.030000	0.542289	
mm_120580.1	chr14	69695327	69695527	+	1	NA	NA	NA	3179	NR_105915	102465573		NR_105915	ENSMUSG00000098666	Mir6950	Gm27586|mmu-mir-6950	microRNA 6950	ncRNA	0.020000	0.497512	
mm_22434.1	chr2	181689073	181689273	-	1	NA	NA	NA	2644	NM_001291205	56470	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0.025000	0.542289	
mm_49148.1	chr6	11926062	11926262	+	1	NA	NA	NA	281	NM_001168382	75725	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	0.125000	0.786070	
mm_152754.1	chr19	20123799	20123999	-	1	NA	NA	NA	266772	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.005000	0.363184	
mm_199.1	chr1	16105245	16105445	+	1	NA	NA	NA	-537	NM_133832	98711	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.125000	0.781095	
mm_135877.1	chr16	63600456	63600656	-	1	NA	NA	NA	263601	NM_010140	13837	Mm.1977	NM_010140	ENSMUSG00000052504	Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding	0.005000	0.358209	
mm_15978.1	chr2	166548578	166548778	+	1	NA	NA	NA	101227	NR_015558	319684	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.005000	0.527363	
mm_66485.1	chr7	45019182	45019382	-	1	NA	NA	NA	1275	NM_009101	20130	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.015000	0.557214	
mm_55106.1	chr6	50261702	50261902	-	1	NA	NA	NA	-33	NM_018769	54722	Mm.248361	NM_018769	ENSMUSG00000029821	Dfna5	2310037D07Rik|4932441K13Rik|Dfna5h|EG14210|Fin15	deafness, autosomal dominant 5 (human)	protein-coding	0.120000	0.711443	
mm_104605.1	chr11	97187725	97187925	-	1	NA	NA	NA	67	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.085000	0.716418	
mm_144591.1	chr18	32162877	32163077	+	1	NA	NA	NA	-112	NM_011946	26405	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0.165000	0.746269	
mm_60862.1	chr7	45896968	45897168	+	1	NA	NA	NA	-1	NM_144801	70209	Mm.163766	NM_144801	ENSMUSG00000002781	Tmem143	2310076O21Rik|AI481604	transmembrane protein 143	protein-coding	0.045000	0.562189	-98(GGCTATTAAATG,-,0.00)
mm_93089.1	chr10	89621185	89621385	-	1	NA	NA	NA	-36	NM_182959	216227	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	0.030000	0.631841	
mm_108881.1	chr12	99964584	99964784	+	1	NA	NA	NA	185	NM_001164427	217826	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.025000	0.621891	
mm_137375.1	chr17	25717101	25717301	+	1	NA	NA	NA	29	NM_022422	64337	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	0.035000	0.621891	
mm_13495.1	chr2	106987117	106987317	+	1	NA	NA	NA	-12820	NM_001025102	212772	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	0.005000	0.512438	
mm_55921.1	chr6	83845022	83845222	-	1	NA	NA	NA	-13381	NM_146169	232164	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	0.030000	0.482587	
mm_166643.1	chr6	83775835	83776035	+	1	NA	NA	NA	-123	NM_009357	21766	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	0.085000	0.626866	
mm_105803.1	chr11	110241562	110241762	-	1	NA	NA	NA	10114	NM_147218	76184	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	0.005000	0.328358	
mm_47716.1	chr5	130000840	130001040	-	1	NA	NA	NA	1888	NM_010368	110006	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.030000	0.547264	
mm_17397.1	chr2	27142408	27142608	-	1	NA	NA	NA	-31	NM_175427	109349	Mm.314080	NM_175427	ENSMUSG00000009216	Fam163b	C630035N08Rik	family with sequence similarity 163, member B	protein-coding	0.155000	0.786070	
mm_167644.1	chr9	64830025	64830225	-	1	NA	NA	NA	19114	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.005000	0.432836	-65(GGCCCTAAAGGG,-,0.00)
mm_87529.1	chr10	53343990	53344190	+	1	NA	NA	NA	6404	NM_001141927	18821	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0.035000	0.517413	
mm_139550.1	chr17	56831260	56831460	+	1	NA	NA	NA	-352	NM_027787	19725	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0.085000	0.651741	
mm_53334.1	chr6	129234995	129235195	+	1	NA	NA	NA	2950	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.005000	0.572139	54(CCTTATCAAGGG,+,0.00)
mm_120780.1	chr14	74641286	74641486	+	1	NA	NA	NA	546	NM_172812	15558	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	0.060000	0.467662	
mm_149270.1	chr19	10582175	10582375	+	1	NA	NA	NA	-4889	NR_126092	72982	Mm.391194	NM_028411	ENSMUSG00000024666	Tmem138	1700113I01Rik|2900055D14Rik	transmembrane protein 138	protein-coding	0.025000	0.522388	
mm_23758.1	chr3	70007574	70007774	+	1	NA	NA	NA	61	NM_001018031	229389	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1	protein-coding	0.010000	0.427861	
mm_84243.1	chr9	62343483	62343683	-	1	NA	NA	NA	2240	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.110000	0.661692	-33(GTTTAAAGAGCC,+,0.00)
mm_114807.1	chr13	91461067	91461267	+	1	NA	NA	NA	70	NM_024186	66970	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.085000	0.681592	
mm_41603.1	chr5	96210045	96210245	+	1	NA	NA	NA	30	NM_053158	94061	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	0.065000	0.547264	
mm_29542.1	chr3	116712155	116712355	-	1	NA	NA	NA	25	NM_144902	229782	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	0.160000	0.761194	
mm_102318.1	chr11	57481685	57481885	-	1	NA	NA	NA	36859	NM_001168667	67726	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	0.005000	0.407960	
mm_122660.1	chr14	51912237	51912437	-	1	NA	NA	NA	1151	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.005000	0.432836	
mm_46922.1	chr5	114669657	114669857	-	1	NA	NA	NA	-11336	NM_022017	63873	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.005000	0.437811	
mm_52269.1	chr6	108472993	108473193	+	1	NA	NA	NA	-16650	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.010000	0.472637	
mm_99011.1	chr11	98836773	98836973	+	1	NA	NA	NA	88	NM_001080925	268480	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0.100000	0.756219	
mm_10081.1	chr1	195176542	195176742	-	1	NA	NA	NA	73	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0.025000	0.606965	
mm_31596.1	chr4	57892859	57893059	+	1	NA	NA	NA	23305	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.025000	0.477612	
mm_51346.1	chr6	72549648	72549848	+	1	NA	NA	NA	101	NM_001271395	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.005000	0.562189	
mm_99483.1	chr11	102606149	102606349	+	1	NA	NA	NA	1818	NM_020510	57265	Mm.36416	NM_020510	ENSMUSG00000050288	Fzd2	AL033370|AW456835|Fz10|Fzd10|Mfz10|Mfz10a	frizzled class receptor 2	protein-coding	0.075000	0.601990	
mm_145529.1	chr18	60774520	60774720	+	1	NA	NA	NA	24	NM_020600	20044	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.080000	0.601990	
mm_28069.1	chr3	84270659	84270859	-	1	NA	NA	NA	24	NM_001271725	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.005000	0.532338	
mm_37167.1	chr4	117156113	117156313	-	1	NA	NA	NA	-81	NM_009098	20116	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	0.080000	0.651741	
mm_110428.1	chr12	46818951	46819151	-	1	NA	NA	NA	-276	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.115000	0.721393	
mm_22075.1	chr2	168749398	168749598	-	1	NA	NA	NA	-7362	NM_001289446	11981	Mm.330819	NM_015731	ENSMUSG00000027546	Atp9a	IIa	ATPase, class II, type 9A	protein-coding	0.010000	0.427861	
mm_55604.1	chr6	71830599	71830799	-	1	NA	NA	NA	-621	NM_001253681	76614	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	0.030000	0.333333	-97(GTCTTTAAATAG,-,0.00)
mm_37739.1	chr4	129578427	129578627	-	1	NA	NA	NA	53	NM_182783	230766	Mm.20377	NM_182783	ENSMUSG00000050493	Fam167b	SEC	family with sequence similarity 167, member B	protein-coding	0.020000	0.527363	
mm_39604.1	chr5	23850499	23850699	+	1	NA	NA	NA	2	NR_045040	67194	Mm.423733	NR_045040	ENSMUSG00000097180	2700038G22Rik	-	RIKEN cDNA 2700038G22 gene	ncRNA	0.110000	0.686567	
mm_128060.1	chr15	26705652	26705852	-	1	NA	NA	NA	189812	NM_176959	448987	Mm.253378	NM_176959	ENSMUSG00000043556	Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding	0.005000	0.393035	
mm_139024.1	chr17	46159118	46159318	+	1	NA	NA	NA	-1814	NM_019581	56055	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.005000	0.462687	-32(GTGTATATAAGC,-,0.00)
mm_71345.1	chr8	45627889	45628089	+	1	NA	NA	NA	238	NM_001310707	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.050000	0.587065	43(GGTTCTAAAGGG,-,0.00)
mm_10693.1	chr2	22622354	22622554	+	1	NA	NA	NA	127	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.095000	0.636816	
mm_79765.1	chr9	62772834	62773034	+	1	NA	NA	NA	38714	NM_010193	14155	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.025000	0.562189	
mm_45289.1	chr5	65019019	65019219	-	1	NA	NA	NA	48801	NR_030577	100124451		NR_030577	ENSMUSG00000077042	Mir574	Mirn574|mir-574|mmu-mir-574	microRNA 574	ncRNA	0.005000	0.507463	
mm_14567.1	chr2	135146633	135146833	+	1	NA	NA	NA	68883	NR_040517	78805	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA	0.000000	0.238806	
mm_130363.1	chr15	97786860	97787060	-	1	NA	NA	NA	2595	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.020000	0.537313	
mm_1586.1	chr1	74295900	74296100	+	1	NA	NA	NA	8336	NM_027154	69660	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.015000	0.616915	
mm_90279.1	chr10	122817879	122818079	+	1	NA	NA	NA	138664	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.030000	0.512438	
mm_111381.1	chr12	87388169	87388369	-	1	NA	NA	NA	86	NM_011479	20773	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.115000	0.726368	
mm_138719.1	chr17	36869437	36869637	+	1	NA	NA	NA	-37	NM_011280	19824	Mm.299155	NM_011280	ENSMUSG00000073400	Trim10	AI324236|BB139825|Herf1|Rnf9	tripartite motif-containing 10	protein-coding	0.005000	0.542289	
mm_2521.1	chr1	106407213	106407413	+	1	NA	NA	NA	139318	NR_106164	102466254		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.005000	0.527363	-33(TCCTTTAAAAGG,-,0.00),-32(CCTTTAAAAGGT,+,0.00)
mm_85537.1	chr9	106570894	106571094	-	1	NA	NA	NA	-27	NM_026090	67320	Mm.335431	NM_026090	ENSMUSG00000041009	Iqcf4	1700042N06Rik|mtIQ1	IQ motif containing F4	protein-coding	0.020000	0.527363	
mm_81300.1	chr9	108339176	108339376	+	1	NA	NA	NA	196	NM_001329528	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.075000	0.601990	
mm_72429.1	chr8	82863364	82863564	+	1	NA	NA	NA	108	NM_177378	330812	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	0.065000	0.616915	
mm_61921.1	chr7	90153461	90153661	+	1	NA	NA	NA	23329	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.015000	0.402985	-88(GACTCTATAAGT,-,0.00)
mm_82797.1	chr9	29412285	29412485	-	1	NA	NA	NA	550744	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.090000	0.666667	
mm_97646.1	chr11	79339781	79339981	+	1	NA	NA	NA	-11	NM_010897	18015	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0.130000	0.820896	
mm_92467.1	chr10	78009647	78009847	-	1	NA	NA	NA	49	NM_008826	18641	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-L	phosphofructokinase, liver, B-type	protein-coding	0.110000	0.701493	
mm_69044.1	chr7	126800531	126800731	-	1	NA	NA	NA	-184	NM_001177308	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.005000	0.557214	
mm_75809.1	chr8	70302362	70302562	-	1	NA	NA	NA	-10	NM_001024922	234374	Mm.388127	NM_001024922	ENSMUSG00000057788	Ddx49	R27090_2	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein-coding	0.090000	0.606965	
mm_128436.1	chr15	50687972	50688172	-	1	NA	NA	NA	200977	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.010000	0.373134	
mm_161722.1	chr17	27705801	27706001	+	1	NA	NA	NA	20662	NM_178365	23969	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.035000	0.631841	-28(GGCCTGATAAGG,-,0.00)
mm_20273.1	chr2	126810140	126810340	-	1	NA	NA	NA	-26780	NM_029163	75083	Mm.389373	NM_029163	ENSMUSG00000027364	Usp50	1700086G18Rik|4930511O11Rik	ubiquitin specific peptidase 50	protein-coding	0.000000	0.278607	
mm_65123.1	chr7	19421239	19421439	-	1	NA	NA	NA	78	NR_073014	100503495	Mm.410762	NR_073014	ENSMUSG00000040705	A930016O22Rik	-	RIKEN cDNA A930016O22 gene	ncRNA	0.080000	0.626866	
mm_113107.1	chr13	24415014	24415214	+	1	NA	NA	NA	-8	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.005000	0.422886	
mm_38318.1	chr4	137321029	137321229	-	1	NA	NA	NA	36630	NM_009861	12540	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.020000	0.452736	
mm_45150.1	chr5	49285576	49285776	-	1	NA	NA	NA	-17	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.030000	0.532338	
mm_93969.1	chr10	127288962	127289162	-	1	NA	NA	NA	-44	NM_033072	110962	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.125000	0.776119	
mm_98585.1	chr11	95748565	95748765	+	1	NA	NA	NA	-402	NM_201609	268469	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	0.000000	0.472637	
mm_165712.1	chr3	98858203	98858403	-	1	NA	NA	NA	1491	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.010000	0.417910	
mm_44171.1	chr5	150924946	150925146	+	1	NA	NA	NA	-27561	NM_013823	16591	Mm.6500	NM_013823	ENSMUSG00000058488	Kl	alpha-kl	klotho	protein-coding	0.000000	0.507463	
mm_76719.1	chr8	94838127	94838327	-	1	NA	NA	NA	113	NM_134141	109006	Mm.27582	NM_134141	ENSMUSG00000031781	Ciapin1	2810413N20Rik|AA617265|AU021794|anamorsin	cytokine induced apoptosis inhibitor 1	protein-coding	0.115000	0.661692	
mm_6105.1	chr1	64030271	64030471	-	1	NA	NA	NA	12130	NR_105864	102466760		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.005000	0.467662	-66(GTATATAAAAAC,-,0.00)
mm_33775.1	chr4	134496905	134497105	+	1	NA	NA	NA	-36	NM_001285849	71904	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	0.075000	0.711443	
mm_6515.1	chr1	74394603	74394803	-	1	NA	NA	NA	393	NR_029743	387219		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.030000	0.577114	
mm_131418.1	chr16	14705777	14705977	+	1	NA	NA	NA	18	NM_011415	20583	Mm.4272	NM_011415	ENSMUSG00000022676	Snai2	Slug|Slugh|Snail2	snail family zinc finger 2	protein-coding	0.090000	0.661692	
mm_60902.1	chr7	46711977	46712177	+	1	NA	NA	NA	-1426	NM_030233	78935	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.015000	0.462687	
mm_150338.1	chr19	34575702	34575902	+	1	NA	NA	NA	-7727	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.010000	0.323383	
mm_59150.1	chr7	24369925	24370125	+	1	NA	NA	NA	-238	NM_001163510	16534	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0.015000	0.537313	
mm_44477.1	chr5	23433822	23434022	-	1	NA	NA	NA	431	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.090000	0.681592	
mm_6155.1	chr1	64994537	64994737	-	1	NA	NA	NA	-37813	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.055000	0.487562	
mm_60209.1	chr7	43440731	43440931	+	1	NA	NA	NA	15	NM_028849	74276	Mm.159153	NM_028849	ENSMUSG00000038973	Cldnd2	1700071E18Rik	claudin domain containing 2	protein-coding	0.025000	0.542289	
mm_166761.1	chr6	129350385	129350585	+	1	NA	NA	NA	241	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.000000	0.358209	
mm_1207.1	chr1	62726303	62726503	+	1	NA	NA	NA	23086	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.010000	0.502488	
mm_30135.1	chr3	142169220	142169420	-	1	NA	NA	NA	-92	NM_001277216	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.090000	0.681592	
mm_134447.1	chr16	18289130	18289330	-	1	NA	NA	NA	-62	NM_033324	94223	Mm.447352	NM_033324	ENSMUSG00000022718	Dgcr8	D16H22S1742E|D16H22S788E|D16Wis2|Gy1|N41|Vo59c07|mir-1306	DiGeorge syndrome critical region gene 8	protein-coding	0.145000	0.756219	
mm_162487.1	chr1	135765975	135766175	+	1	NA	NA	NA	-10	NM_013750	27280	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	0.110000	0.766169	
mm_77441.1	chr8	121652770	121652970	-	1	NA	NA	NA	-937	NM_080855	142682	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0.170000	0.805970	
mm_118291.1	chr13	113046249	113046449	-	1	NA	NA	NA	39	NM_027127	69590	Mm.12715	NM_027127	ENSMUSG00000021760	Gpx8	2310016C16Rik|AU017063	glutathione peroxidase 8 (putative)	protein-coding	0.040000	0.492537	
mm_108700.1	chr12	86949632	86949832	+	1	NA	NA	NA	2389	NM_001289432	217732	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.005000	0.492537	
mm_2016.1	chr1	87127841	87128041	+	1	NA	NA	NA	2933	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.035000	0.621891	
mm_169457.1	chr14	63497943	63498143	+	1	NA	NA	NA	11049	NM_021480	58865	Mm.354229	NM_021480	ENSMUSG00000021953	Tdh	-	L-threonine dehydrogenase	protein-coding	0.030000	0.527363	
mm_38643.1	chr4	143212610	143212810	-	1	NA	NA	NA	-1	NM_001256380	110593	Mm.332020	NM_001081355	ENSMUSG00000057637	Prdm2	4833427P12Rik|E330024L24Rik|Gm1033|Gm19732|KMT8|Riz|Riz1|Znfpr1c1	PR domain containing 2, with ZNF domain	protein-coding	0.170000	0.756219	
mm_73317.1	chr8	105225110	105225310	+	1	NA	NA	NA	22	NM_145604	234678	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	0.080000	0.641791	
mm_6872.1	chr1	84284432	84284632	-	1	NA	NA	NA	113	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.120000	0.731343	
mm_147131.1	chr18	36126244	36126444	-	1	NA	NA	NA	20141	NR_015571	74966	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA	0.015000	0.407960	
mm_128793.1	chr15	66812101	66812301	-	1	NA	NA	NA	19628	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.005000	0.452736	
mm_59656.1	chr7	28180097	28180297	+	1	NA	NA	NA	-119	NM_001271370	13549	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0.090000	0.751244	
mm_52404.1	chr6	113333218	113333418	+	1	NA	NA	NA	6342	NM_010957	18294	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0.020000	0.517413	
mm_111430.1	chr12	91745955	91746155	-	1	NA	NA	NA	40381	NM_175367	108800	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.015000	0.477612	
mm_20154.1	chr2	121806903	121807103	-	1	NA	NA	NA	54	NM_172673	228564	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|5830442F04|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	0.070000	0.696517	
mm_18225.1	chr2	51149008	51149208	-	1	NA	NA	NA	3	NM_028810	74194	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0.075000	0.562189	
mm_97949.1	chr11	83664471	83664671	+	1	NA	NA	NA	1987	NM_013652	20303	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.015000	0.348259	
mm_151398.1	chr19	56461523	56461723	+	1	NA	NA	NA	-14	NM_001164263	226245	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	0.020000	0.502488	
mm_48343.1	chr5	139306183	139306383	-	1	NA	NA	NA	19181	NM_172723	231821	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.010000	0.557214	
mm_126467.1	chr15	81235514	81235714	+	1	NA	NA	NA	115	NM_145132	207911	Mm.323523	NM_145132	ENSMUSG00000050164	Mchr1	AW049955|Gpr24|Mch1r	melanin-concentrating hormone receptor 1	protein-coding	0.050000	0.621891	39(CCTTTTCTGGAC,+,0.00)
mm_142442.1	chr17	45572788	45572988	-	1	NA	NA	NA	373	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.110000	0.756219	
mm_146830.1	chr18	21652102	21652302	-	1	NA	NA	NA	166	NM_001081403	225266	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	0.045000	0.651741	
mm_9893.1	chr1	186705180	186705380	-	1	NA	NA	NA	709	NM_009367	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.140000	0.706468	
mm_124860.1	chr15	9556111	9556311	+	1	NA	NA	NA	-26335	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.010000	0.432836	-32(TCTTTAAAACTG,+,0.00)
mm_146851.1	chr18	24111959	24112159	-	1	NA	NA	NA	9760	NM_172625	225280	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0.015000	0.557214	
mm_101157.1	chr11	16972691	16972891	-	1	NA	NA	NA	21381	NM_176982	319701	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.005000	0.358209	
mm_31436.1	chr4	48540028	48540228	+	1	NA	NA	NA	47	NM_001145924	66665	Mm.140749	NM_028137	ENSMUSG00000039693	Msantd3	2410046L14Rik|2810429P03Rik|5730528L13Rik|Mysantd3	Myb/SANT-like DNA-binding domain containing 3	protein-coding	0.070000	0.597015	
mm_59089.1	chr7	19696308	19696508	+	1	NA	NA	NA	1990	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.015000	0.562189	
mm_89211.1	chr10	86704191	86704391	+	1	NA	NA	NA	1153	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.020000	0.492537	
mm_149033.1	chr19	8802685	8802885	+	1	NA	NA	NA	255	NM_001098237	75291	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	0.040000	0.572139	
mm_26077.1	chr3	136670424	136670624	+	1	NA	NA	NA	458	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.120000	0.646766	
mm_91087.1	chr10	19015189	19015389	-	1	NA	NA	NA	121	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.120000	0.716418	
mm_10487.1	chr2	14823921	14824121	+	1	NA	NA	NA	-71	NM_001252533	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.015000	0.447761	
mm_126888.1	chr15	89497827	89498027	+	1	NA	NA	NA	-1930	NM_021423	58234	Mm.146855	NM_021423	ENSMUSG00000022623	Shank3	AI841104|SHANK3c-3|SHANK3c-4|Shank3b	SH3/ankyrin domain gene 3	protein-coding	0.010000	0.592040	
mm_155604.1	chrX	82950436	82950636	+	1	NA	NA	NA	1666	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.010000	0.268657	
mm_50433.1	chr6	48845120	48845320	+	1	NA	NA	NA	3564	NM_001098271	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.015000	0.572139	
mm_130607.1	chr15	99820013	99820213	-	1	NA	NA	NA	36	NM_023063	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.020000	0.502488	-85(GTCCTTATAAGG,-,0.00),-83(CCTTATAAGGCT,+,0.00)
mm_135656.1	chr16	52400502	52400702	-	1	NA	NA	NA	52479	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.427861	
mm_55848.1	chr6	83367703	83367903	-	1	NA	NA	NA	18319	NM_175277	78653	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0.020000	0.363184	
mm_165206.1	chr2	34913434	34913634	+	1	NA	NA	NA	442	NM_028716	74016	Mm.65691	NM_028716	ENSMUSG00000026873	Phf19	3110009G19Rik|3321402G02Rik	PHD finger protein 19	protein-coding	0.065000	0.592040	-35(GGCTTTTTAAAA,-,0.00),-33(CTTTTTAAAAGG,+,0.00),-33(CTTTTTAAAAGG,-,0.00),-32(TTTTTAAAAGGG,+,0.00)
mm_28269.1	chr3	88755865	88756065	-	1	NA	NA	NA	16634	NM_018804	229521	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0.000000	0.378109	
mm_20292.1	chr2	126933028	126933228	-	1	NA	NA	NA	107	NM_023220	66552	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	0.080000	0.646766	
mm_63644.1	chr7	128687458	128687658	+	1	NA	NA	NA	-1312	NM_001346517	101490	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0.080000	0.537313	
mm_56337.1	chr6	92706167	92706367	-	1	NA	NA	NA	-83	NM_001081146	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.100000	0.726368	
mm_59098.1	chr7	19696883	19697083	+	1	NA	NA	NA	1415	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.065000	0.621891	
mm_120751.1	chr14	73239317	73239517	+	1	NA	NA	NA	1526	NM_175116	67168	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.020000	0.437811	
mm_169955.1	chr16	85813853	85814053	-	1	NA	NA	NA	-5258	NR_040506	75310	Mm.108627	NR_040506		4930556C24Rik	-	RIKEN cDNA 4930556C24 gene	ncRNA	0.005000	0.512438	33(CCTTTTATAAGC,+,0.00),33(CCTTTTATAAGC,-,0.00)
mm_71496.1	chr8	46791781	46791981	+	1	NA	NA	NA	52136	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.000000	0.388060	
mm_7338.1	chr1	105663573	105663773	-	1	NA	NA	NA	3	NM_013784	27392	Mm.268911	NM_013784	ENSMUSG00000056536	Pign	Gm20308|PIG-N	phosphatidylinositol glycan anchor biosynthesis, class N	protein-coding	0.045000	0.587065	
mm_91623.1	chr10	41746542	41746742	-	1	NA	NA	NA	63021	NM_001243075	103268	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	0.010000	0.378109	
mm_168075.1	chr10	111493268	111493468	+	1	NA	NA	NA	-7420	NR_033603	382421	Mm.245643	NR_033603		Gm5176	EG382421	high mobility group box 2 pseudogene	pseudo	0.010000	0.348259	
mm_2244.1	chr1	91056493	91056693	+	1	NA	NA	NA	3149	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.015000	0.527363	
mm_155031.1	chrX	42068277	42068477	+	1	NA	NA	NA	-21	NM_001301639	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.075000	0.666667	
mm_161653.1	chr17	6655641	6655841	-	1	NA	NA	NA	90	NM_001166630	100040563	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	0.070000	0.626866	
mm_154372.1	chrM	9998	10198	+	1	NA	NA	NA	NA	NA									0.025000	0.402985	
mm_56071.1	chr6	86793496	86793696	-	1	NA	NA	NA	-12	NM_013471	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.060000	0.636816	
mm_153811.1	chr19	46045274	46045474	-	1	NA	NA	NA	-163	NM_001113408	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.150000	0.721393	
mm_27235.1	chr3	36474428	36474628	-	1	NA	NA	NA	996	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.010000	0.452736	
mm_166437.1	chr5	137207602	137207802	-	1	NA	NA	NA	-80552	NM_009599	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.015000	0.557214	71(TCTTATAAGCAC,+,0.00)
mm_53366.1	chr6	129397388	129397588	+	1	NA	NA	NA	191	NM_001204239	56760	Mm.30700	NM_019985	ENSMUSG00000030159	Clec1b	1810061I13Rik|Clec-2|Clec2	C-type lectin domain family 1, member b	protein-coding	0.010000	0.497512	
mm_7722.1	chr1	130661525	130661725	-	1	NA	NA	NA	-7	NM_007576	12269	Mm.306720	NM_007576	ENSMUSG00000026405	C4bp	AI195242|C4bpa	complement component 4 binding protein	protein-coding	0.015000	0.457711	
mm_133112.1	chr16	65523477	65523677	+	1	NA	NA	NA	2948	NM_008849	18736	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.025000	0.432836	
mm_16639.1	chr2	5942624	5942824	-	1	NA	NA	NA	68	NM_001081131	209692	Mm.222517	NM_001081131	ENSMUSG00000025815	Dhtkd1	C330018I04Rik	dehydrogenase E1 and transketolase domain containing 1	protein-coding	0.065000	0.597015	
mm_27461.1	chr3	52179871	52180071	-	1	NA	NA	NA	-74965	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.025000	0.636816	
mm_150430.1	chr19	37495417	37495617	+	1	NA	NA	NA	30263	NR_131009	78640	Mm.234265	NR_131008		1700122C19Rik	-	RIKEN cDNA 1700122C19 gene	ncRNA	0.025000	0.462687	
mm_25838.1	chr3	129213861	129214061	+	1	NA	NA	NA	29	NM_001287048	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.085000	0.676617	
mm_165970.1	chr4	98546519	98546719	+	1	NA	NA	NA	-15	NM_007704	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.015000	0.522388	
mm_78392.1	chr9	28674898	28675098	+	1	NA	NA	NA	883729	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.000000	0.398010	-34(GGCCATATAAAA,-,0.00),-32(CCATATAAAAAC,-,0.00)
mm_169164.1	chr13	65484719	65484919	-	1	NA	NA	NA	205965	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.015000	0.532338	
mm_17801.1	chr2	33336806	33337006	-	1	NA	NA	NA	34588	NM_001290570	241308	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0.005000	0.512438	
mm_52947.1	chr6	122952702	122952902	+	1	NA	NA	NA	158	NM_153197	73149	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.015000	0.442786	
mm_30844.1	chr4	24585371	24585571	+	1	NA	NA	NA	89009	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.005000	0.407960	
mm_58098.1	chr6	137537689	137537889	-	1	NA	NA	NA	-17894	NM_001271589	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.010000	0.368159	
mm_77164.1	chr8	111688554	111688754	-	1	NA	NA	NA	1020	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.025000	0.552239	
mm_16245.1	chr2	173158320	173158520	+	1	NA	NA	NA	5347	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.055000	0.582090	
mm_59831.1	chr7	29303843	29304043	+	1	NA	NA	NA	-62	NM_013874	29861	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.160000	0.781095	
mm_126050.1	chr15	76948415	76948615	+	1	NA	NA	NA	-29	NM_054099	117171	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0.080000	0.592040	
mm_48973.1	chr6	4754097	4754297	+	1	NA	NA	NA	6891	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.030000	0.587065	
mm_86032.1	chr9	113707589	113707789	-	1	NA	NA	NA	570	NM_001164678	18571	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0.035000	0.547264	
mm_20265.1	chr2	126675354	126675554	-	1	NA	NA	NA	138	NM_001271469	14391	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.135000	0.701493	
mm_58906.1	chr7	17203353	17203553	+	1	NA	NA	NA	-24	NM_054064	114872	Mm.322280	NM_054064	ENSMUSG00000023159	Psg29	AA102956|AA409969|cea17	pregnancy-specific glycoprotein 29	protein-coding	0.000000	0.502488	
mm_144808.1	chr18	36281415	36281615	+	1	NA	NA	NA	353	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.105000	0.741294	
mm_54407.1	chr6	31563799	31563999	-	1	NA	NA	NA	38	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	0.150000	0.796020	
mm_99216.1	chr11	101030317	101030517	+	1	NA	NA	NA	77	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.020000	0.502488	
mm_1759.1	chr1	75524894	75525094	+	1	NA	NA	NA	3465	NM_027886	71728	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	0.015000	0.597015	
mm_64143.1	chr7	141216553	141216753	+	1	NA	NA	NA	793	NM_025886	66985	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	0.005000	0.621891	
mm_17222.1	chr2	25500578	25500778	-	1	NA	NA	NA	-100	NM_013908	30839	Mm.29170	NM_013908	ENSMUSG00000015095	Fbxw5	AI159739|Fbw5	F-box and WD-40 domain protein 5	protein-coding	0.070000	0.616915	
mm_5429.1	chr1	34560823	34561023	-	1	NA	NA	NA	20	NM_009356	21756	Mm.14418	NM_009356	ENSMUSG00000037529	Prss40	Tesp2	protease, serine 40	protein-coding	0.060000	0.641791	
mm_153506.1	chr19	41363544	41363744	-	1	NA	NA	NA	21426	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.005000	0.437811	
mm_94007.1	chr10	127620593	127620793	-	1	NA	NA	NA	455	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.045000	0.636816	
mm_164054.1	chr14	103048987	103049187	+	1	NA	NA	NA	2075	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.010000	0.427861	
mm_35138.1	chr4	11386595	11386795	-	1	NA	NA	NA	83	NM_001347052	207920	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	0.045000	0.621891	
mm_156442.1	chrX	142228607	142228807	+	1	NA	NA	NA	4	NM_001290533	237082	Mm.41899	NM_172782	ENSMUSG00000042271	Nxt2	6330587F24Rik|AI787442|P15-2	nuclear transport factor 2-like export factor 2	protein-coding	0.060000	0.616915	
mm_115097.1	chr13	102723151	102723351	+	1	NA	NA	NA	29693	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.000000	0.288557	8(GACTTTAAATGA,-,0.00)
mm_11690.1	chr2	35661402	35661602	+	1	NA	NA	NA	-30492	NM_001001602	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.120000	0.746269	
mm_8441.1	chr1	152809827	152810027	-	1	NA	NA	NA	9774	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.010000	0.512438	
mm_149116.1	chr19	8967040	8967240	+	1	NA	NA	NA	99	NM_026007	67160	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	0.070000	0.587065	-56(CCTTTTATGCCG,+,0.00)
mm_141031.1	chr17	25273160	25273360	-	1	NA	NA	NA	171	NM_001177610	22196	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|F830028O17Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	0.155000	0.771144	
mm_46331.1	chr5	101239553	101239753	-	1	NA	NA	NA	393424	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|Gpat3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding	0.030000	0.492537	
mm_89152.1	chr10	86032724	86032924	+	1	NA	NA	NA	10670	NM_001347151	69754	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	0.005000	0.378109	
mm_67662.1	chr7	86775699	86775899	-	1	NA	NA	NA	65	NM_016770	53320	Mm.269137	NM_016770	ENSMUSG00000001773	Folh1	GCP2|mopsm	folate hydrolase 1	protein-coding	0.040000	0.537313	
mm_65512.1	chr7	25754662	25754862	-	1	NA	NA	NA	-42	NM_144922	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.085000	0.686567	
mm_9900.1	chr1	186749189	186749389	-	1	NA	NA	NA	69	NM_026041	67223	Mm.289841	NM_026041	ENSMUSG00000001305	Rrp15	2810430M08Rik|5430437H21Rik	ribosomal RNA processing 15 homolog (S. cerevisiae)	protein-coding	0.065000	0.537313	
mm_105094.1	chr11	100931351	100931551	-	1	NA	NA	NA	8089	NM_213660	20848	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.010000	0.407960	-30(GCTTTTAGAGAG,+,0.00)
mm_107946.1	chr12	72086020	72086220	+	1	NA	NA	NA	281	NM_024205	104771	Mm.258935	NM_024205	ENSMUSG00000005078	Jkamp	1200003C05Rik|2310047L11Rik|Jamp	JNK1/MAPK8-associated membrane protein	protein-coding	0.095000	0.676617	
mm_33601.1	chr4	132568577	132568777	+	1	NA	NA	NA	4610	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.005000	0.472637	
mm_167839.1	chr9	124440733	124440933	+	1	NA	NA	NA	17046	NR_015516	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.040000	0.681592	
mm_47518.1	chr5	124095640	124095840	-	1	NA	NA	NA	58	NM_019875	56325	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.105000	0.711443	
mm_76572.1	chr8	88664203	88664403	-	1	NA	NA	NA	16956	NM_145857	257632	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0.050000	0.582090	
mm_129185.1	chr15	76309675	76309875	-	1	NA	NA	NA	-2530	NM_153122	75475	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0.020000	0.587065	
mm_153063.1	chr19	32196302	32196502	-	1	NA	NA	NA	14611	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.010000	0.472637	
mm_27800.1	chr3	75891870	75892070	-	1	NA	NA	NA	64979	NM_175193	73124	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.020000	0.452736	
mm_26623.1	chr3	152702586	152702786	+	1	NA	NA	NA	-11414	NM_178016	329777	Mm.331447	NM_025662	ENSMUSG00000039047	Pigk	3000001O05Rik	phosphatidylinositol glycan anchor biosynthesis, class K	protein-coding	0.020000	0.472637	
mm_24236.1	chr3	88950766	88950966	+	1	NA	NA	NA	-584	NM_001164533	65111	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0.090000	0.656716	
mm_122964.1	chr14	54973704	54973904	-	1	NA	NA	NA	1972	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.035000	0.572139	
mm_114518.1	chr13	73260463	73260663	+	1	NA	NA	NA	66	NM_018885	50916	Mm.103784	NM_018885	ENSMUSG00000021604	Irx4	-	Iroquois related homeobox 4 (Drosophila)	protein-coding	0.140000	0.741294	
mm_163906.1	chr14	31001845	31002045	+	1	NA	NA	NA	-279	NM_026911	69019	Mm.28852	NM_026911	ENSMUSG00000021917	Spcs1	1810004F21Rik	signal peptidase complex subunit 1 homolog (S. cerevisiae)	protein-coding	0.095000	0.631841	
mm_102247.1	chr11	55109579	55109779	-	1	NA	NA	NA	11694	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.015000	0.512438	
mm_18324.1	chr2	57116509	57116709	-	1	NA	NA	NA	-1571	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.055000	0.582090	
mm_68772.1	chr7	121993299	121993499	-	1	NA	NA	NA	-11706	NM_001033318	233824	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0.000000	0.393035	
mm_103424.1	chr11	75594699	75594899	-	1	NA	NA	NA	5432	NR_110477	654359	Mm.439961	NR_110477		Gm12338	OTTMUSG00000006216	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.020000	0.507463	
mm_100033.1	chr11	114982285	114982485	+	1	NA	NA	NA	7501	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.000000	0.288557	
mm_15347.1	chr2	156143929	156144129	+	1	NA	NA	NA	-124	NM_001164216	67067	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	0.085000	0.641791	
mm_148881.1	chr19	6532135	6532335	+	1	NA	NA	NA	10835	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.035000	0.592040	
mm_154911.1	chrX	21484440	21484640	+	1	NA	NA	NA	-84	NM_007429	11609	Mm.2679	NM_007429	ENSMUSG00000068122	Agtr2	AI316812|AW107640	angiotensin II receptor, type 2	protein-coding	0.005000	0.422886	
mm_145790.1	chr18	65244177	65244377	+	1	NA	NA	NA	-4584	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.030000	0.462687	-30(ACTTTTAAACCC,+,0.00),-14(TCCCATAAAGGG,-,0.00),9(AGGCCTAAAAGC,-,0.00)
mm_111552.1	chr12	101028973	101029173	-	1	NA	NA	NA	-90	NM_026681	68339	Mm.156217	NM_026681	ENSMUSG00000021182	Ccdc88c	0610010D24Rik|AV000935|AW324073|Daple|mKIAA1509	coiled-coil domain containing 88C	protein-coding	0.125000	0.771144	
mm_96803.1	chr11	69981378	69981578	+	1	NA	NA	NA	-243	NM_018740	54351	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.110000	0.736318	
mm_141133.1	chr17	26206349	26206549	-	1	NA	NA	NA	3487	NM_001081069	50782	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	0.005000	0.512438	
mm_112513.1	chr13	9093721	9093921	+	1	NA	NA	NA	-60	NM_001311117	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.110000	0.716418	
mm_37118.1	chr4	116651445	116651645	-	1	NA	NA	NA	129	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.060000	0.631841	
mm_28407.1	chr3	90253985	90254185	-	1	NA	NA	NA	-196	NM_028881	74343	Mm.35627	NM_028881	ENSMUSG00000027936	Crtc2	4632407F12Rik|Torc2|mTORC2	CREB regulated transcription coactivator 2	protein-coding	0.060000	0.592040	
mm_135927.1	chr16	70517486	70517686	-	1	NA	NA	NA	-98839	NR_040474	52645	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0.005000	0.318408	
mm_109393.1	chr12	109748004	109748204	+	1	NA	NA	NA	226	NR_037233	100499517		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	0.040000	0.512438	
mm_71800.1	chr8	68276598	68276798	+	1	NA	NA	NA	170	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.065000	0.696517	
mm_20321.1	chr2	127333948	127334148	-	1	NA	NA	NA	-2111	NM_010090	13537	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.015000	0.582090	
mm_56953.1	chr6	120002145	120002345	-	1	NA	NA	NA	32066	NR_030487	735290		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	0.010000	0.338308	
mm_105169.1	chr11	101784236	101784436	-	1	NA	NA	NA	974	NM_008815	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.050000	0.661692	
mm_45416.1	chr5	66491997	66492197	-	1	NA	NA	NA	126720	NM_009686	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.035000	0.542289	
mm_112238.1	chr12	113482313	113482513	-	1	NA	NA	NA	-7152	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.497512	
mm_22658.1	chr3	14871587	14871787	+	1	NA	NA	NA	8149	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.020000	0.597015	
mm_88389.1	chr10	76480937	76481137	+	1	NA	NA	NA	-11923	NM_172550	216119	Mm.344778	NM_172550	ENSMUSG00000033126	Ybey	1110068N23Rik|A130042E20Rik|C21orf57|ORF57|ORF66	ybeY metallopeptidase	protein-coding	0.050000	0.557214	
mm_58881.1	chr7	17056190	17056390	+	1	NA	NA	NA	389	NM_016868	53417	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0.095000	0.706468	
mm_109669.1	chr12	113050451	113050651	+	1	NA	NA	NA	-23951	NM_029381	75671	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0.015000	0.512438	
mm_140126.1	chr17	79614965	79615165	+	1	NA	NA	NA	165	NM_201361	381110	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.080000	0.721393	
mm_114372.1	chr13	63108909	63109109	+	1	NA	NA	NA	-131020	NR_110520	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.010000	0.482587	
mm_16619.1	chr2	5670197	5670397	-	1	NA	NA	NA	5749	NM_001290376	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.020000	0.512438	
mm_161298.1	chr14	30607836	30608036	-	1	NA	NA	NA	2374	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.010000	0.557214	
mm_51895.1	chr6	90619078	90619278	+	1	NA	NA	NA	-68	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.020000	0.601990	
mm_107647.1	chr12	52507173	52507373	+	1	NA	NA	NA	-8804	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0.005000	0.383085	
mm_168713.1	chr12	102412458	102412658	-	1	NA	NA	NA	27255	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.075000	0.661692	
mm_30169.1	chr3	144201834	144202034	-	1	NA	NA	NA	398	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.080000	0.661692	
mm_149796.1	chr19	23605740	23605940	+	1	NA	NA	NA	46972	NM_026188	67483	Mm.443287	NM_026188	ENSMUSG00000033053	1700028P14Rik	AV209940	RIKEN cDNA 1700028P14 gene	protein-coding	0.025000	0.517413	
mm_3034.1	chr1	133977385	133977585	+	1	NA	NA	NA	-56084	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.020000	0.482587	
mm_75152.1	chr8	36175946	36176146	-	1	NA	NA	NA	73470	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.005000	0.507463	
mm_155634.1	chrX	84772721	84772921	+	1	NA	NA	NA	-275474	NM_001314038	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.010000	0.398010	-35(GCATTTTAAAGC,-,0.00)
mm_27284.1	chr3	41496937	41497137	-	1	NA	NA	NA	-3838	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.010000	0.577114	
mm_26652.1	chr3	154313992	154314192	+	1	NA	NA	NA	16468	NM_010713	16875	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.025000	0.537313	
mm_132595.1	chr16	38458711	38458911	+	1	NA	NA	NA	-122	NM_009855	12519	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0.010000	0.557214	
mm_110528.1	chr12	54986235	54986435	-	1	NA	NA	NA	1	NM_013815	217578	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.100000	0.636816	
mm_111778.1	chr12	104153769	104153969	-	1	NA	NA	NA	3	NM_008458	16625	Mm.422814	NM_008458	ENSMUSG00000066361	Serpina3c	1A1|Kalbp|Klkbp|spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3C	protein-coding	0.005000	0.527363	-15(GCTTTAATGTGC,+,0.00)
mm_70200.1	chr7	144582323	144582523	-	1	NA	NA	NA	13	NM_010175	14082	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	0.085000	0.631841	
mm_19891.1	chr2	114050861	114051061	-	1	NA	NA	NA	1914	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.005000	0.333333	
mm_170463.1	chr1	8936384	8936584	+	1	NA	NA	NA	363393	NM_001290390	71096	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	0.020000	0.497512	
mm_166969.1	chr7	44553787	44553987	-	1	NA	NA	NA	78	NM_009473	22260	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0.085000	0.597015	
mm_129640.1	chr15	80257437	80257637	-	1	NA	NA	NA	2353	NM_009716	11911	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	0.010000	0.407960	
mm_71808.1	chr8	68880537	68880737	+	1	NA	NA	NA	82	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.055000	0.587065	-14(CCCCTTTAAAGG,-,0.00),-13(CCCTTTAAAGGT,+,0.00),-13(CCCTTTAAAGGT,-,0.00),-12(CCTTTAAAGGTT,+,0.00)
mm_113252.1	chr13	27801546	27801746	+	1	NA	NA	NA	-9	NM_019991	56635	Mm.23585	NM_019991	ENSMUSG00000022886	Prl2a1	Ghd21|PLP-M|Prlpm	prolactin family 2, subfamily a, member 1	protein-coding	0.005000	0.422886	-34(CACTATATAGGA,-,0.00)
mm_64747.1	chr7	4778043	4778243	-	1	NA	NA	NA	-2	NM_008350	16156	Mm.35814	NM_008350	ENSMUSG00000004371	Il11	IL-11	interleukin 11	protein-coding	0.045000	0.696517	-34(CCCTATATAACC,+,0.00)
mm_162296.1	chr1	33738841	33739041	+	1	NA	NA	NA	18522	NM_001159729	19335	Mm.86744	NM_008999	ENSMUSG00000004768	Rab23	AW545388|opb|opb2	RAB23, member RAS oncogene family	protein-coding	0.015000	0.512438	
mm_172130.1	chr6	3344118	3344318	+	1	NA	NA	NA	55353	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.000000	0.492537	31(CCTTTTATAAGT,+,0.00)
mm_41159.1	chr5	87929813	87930013	+	1	NA	NA	NA	4280	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.000000	0.457711	
mm_51987.1	chr6	92091401	92091601	+	1	NA	NA	NA	83	NM_011630	22026	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.135000	0.731343	
mm_58954.1	chr7	18812480	18812680	+	1	NA	NA	NA	9011	NM_007677	26437	Mm.302844	NM_007677	ENSMUSG00000004540	Psg17	Cea-2|Cea2|mmCGM5	pregnancy specific glycoprotein 17	protein-coding	0.010000	0.407960	-41(CCCCTTAAAAAG,-,0.00),-39(CCTTAAAAAGAG,+,0.00),-30(GAGTATAAAAAA,-,0.00)
mm_95918.1	chr11	58220643	58220843	+	1	NA	NA	NA	5766	NM_019440	54396	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	0.015000	0.517413	
mm_112887.1	chr13	20860517	20860717	+	1	NA	NA	NA	66504	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.383085	
mm_127140.1	chr15	98171948	98172148	+	1	NA	NA	NA	4242	NM_177716	239650	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	0.005000	0.442786	-83(CCTCAAAGAGCC,+,0.00)
mm_30678.1	chr4	11171831	11172031	+	1	NA	NA	NA	15490	NM_021897	60599	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.010000	0.398010	
mm_8658.1	chr1	156474165	156474365	-	1	NA	NA	NA	63	NM_009230	20652	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0.125000	0.721393	
mm_99256.1	chr11	101155904	101156104	+	1	NA	NA	NA	120	NM_134028	103768	Mm.142348	NM_134028	ENSMUSG00000045007	Tubg2	AI504772|Tubgl	tubulin, gamma 2	protein-coding	0.100000	0.676617	
mm_119346.1	chr14	41105112	41105312	+	1	NA	NA	NA	179	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.020000	0.507463	
mm_26201.1	chr3	138526526	138526726	+	1	NA	NA	NA	205	NR_035481	100316706		NR_035481	ENSMUSG00000088373	Mir1956	mir-1956|mmu-mir-1956	microRNA 1956	ncRNA	0.070000	0.616915	
mm_79781.1	chr9	62868545	62868745	+	1	NA	NA	NA	-6621	NR_003965	677044	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	ENSMUSG00000074250	ribsomal protein S2 pseudogene	pseudo	0.010000	0.582090	
mm_2761.1	chr1	130462484	130462684	+	1	NA	NA	NA	160	NM_010016	13136	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0.085000	0.666667	
mm_115105.1	chr13	103332504	103332704	+	1	NA	NA	NA	1888	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.010000	0.447761	
mm_5710.1	chr1	43826468	43826668	-	1	NA	NA	NA	1140	NM_026430	67883	Mm.387202	NM_026430	ENSMUSG00000057363	Uxs1	1600025I13Rik|AI451869|AI649125|AW550562	UDP-glucuronate decarboxylase 1	protein-coding	0.000000	0.582090	
mm_140951.1	chr17	24533621	24533821	-	1	NA	NA	NA	26	NM_177375	328778	Mm.266033	NM_177375	ENSMUSG00000079657	Rab26	A830020M03Rik	RAB26, member RAS oncogene family	protein-coding	0.100000	0.716418	
mm_90610.1	chr10	128337739	128337939	+	1	NA	NA	NA	112	NM_026444	12974	Mm.58836	NM_026444	ENSMUSG00000005683	Cs	2610511A05Rik|9030605P22Rik|Ahl4|BB234005|Cis	citrate synthase	protein-coding	0.085000	0.661692	
mm_46804.1	chr5	113076896	113077096	-	1	NA	NA	NA	4588	NM_001159650	12962	Mm.378899	NM_021352	ENSMUSG00000029352	Crybb3	AI852419	crystallin, beta B3	protein-coding	0.000000	0.412935	
mm_143984.1	chr17	87613329	87613529	-	1	NA	NA	NA	-22550	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.035000	0.527363	
mm_107171.1	chr12	24708894	24709094	+	1	NA	NA	NA	740	NM_009104	20135	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0.050000	0.522388	
mm_144219.1	chr18	9769893	9770093	+	1	NA	NA	NA	62345	NM_130449	140792	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.000000	0.318408	
mm_138291.1	chr17	34629277	34629477	+	1	NA	NA	NA	-309	NM_030890	260297	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31	proline-rich transmembrane protein 1	protein-coding	0.030000	0.572139	
mm_168537.1	chr1	161877845	161878045	+	1	NA	NA	NA	-1284	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.005000	0.567164	
mm_144797.1	chr18	36106069	36106269	+	1	NA	NA	NA	-34	NR_015571	74966	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA	0.010000	0.502488	
mm_37173.1	chr4	117182850	117183050	-	1	NA	NA	NA	-326	NM_134471	73804	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.030000	0.497512	
mm_132611.1	chr16	38651231	38651431	+	1	NA	NA	NA	61704	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.030000	0.527363	
mm_103666.1	chr11	79059748	79059948	-	1	NA	NA	NA	36251	NR_045873	790910	Mm.440410	NR_045873		Gm11201	ENSMUSG00000072637|OTTMUSG00000000169	predicted gene 11201	ncRNA	0.010000	0.567164	
mm_3542.1	chr1	150403550	150403750	+	1	NA	NA	NA	-10595	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.015000	0.383085	
mm_74808.1	chr8	22633176	22633376	-	1	NA	NA	NA	3533	NR_027886	68074	Mm.463136	NR_027886		A930013F10Rik	-	RIKEN cDNA A930013F10 gene	ncRNA	0.005000	0.417910	
mm_25476.1	chr3	108911742	108911942	+	1	NA	NA	NA	-138	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.075000	0.626866	
mm_88830.1	chr10	80805141	80805341	+	1	NA	NA	NA	-7	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.020000	0.577114	
mm_154481.1	chrM	4364	4564	-	1	NA	NA	NA	NA	NA									0.005000	0.338308	
mm_60472.1	chr7	44478042	44478242	+	1	NA	NA	NA	-6375	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.457711	
mm_129053.1	chr15	75566460	75566660	-	1	NA	NA	NA	88	NM_001135689	23934	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	0.090000	0.716418	
mm_134298.1	chr16	15114016	15114216	-	1	NA	NA	NA	207470	NM_025769	66793	Mm.100270	NM_025769	ENSMUSG00000068617	Efcab1	4930449A16Rik|5430404L10Rik	EF hand calcium binding domain 1	protein-coding	0.005000	0.472637	
mm_22569.1	chr3	10088016	10088216	+	1	NA	NA	NA	-161	NR_045710	100041480	Mm.455632	NR_045710	ENSMUSG00000049230	Gm9833	ENSMUSG00000049230	myelin basic protein expression factor 2, repressor pseudogene	pseudo	0.110000	0.577114	
mm_159086.1	chr2	30078625	30078825	+	1	NA	NA	NA	-41	NM_153805	263803	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	0.015000	0.552239	
mm_149965.1	chr19	29046398	29046598	+	1	NA	NA	NA	-985	NR_028360	67329	Mm.394933	NR_028360		1700018L02Rik	-	RIKEN cDNA 1700018L02 gene	ncRNA	0.035000	0.472637	-99(TCTTTTAAACAA,+,0.00)
mm_89793.1	chr10	102374337	102374537	+	1	NA	NA	NA	0	NM_026243	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.030000	0.482587	
mm_105499.1	chr11	106160362	106160562	-	1	NA	NA	NA	-320	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.105000	0.616915	
mm_148779.1	chr19	6108589	6108789	+	1	NA	NA	NA	2891	NM_001009546	381204	Mm.359041	NM_001009546	ENSMUSG00000054999	Naaladl1	Gm964|Naaladasel	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding	0.030000	0.577114	
mm_40496.1	chr5	57717658	57717858	+	1	NA	NA	NA	161	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	0.050000	0.547264	
mm_146026.1	chr18	69519743	69519943	+	1	NA	NA	NA	174122	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.025000	0.472637	
mm_25832.1	chr3	129199810	129200010	+	1	NA	NA	NA	32	NM_001042504	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.100000	0.651741	
mm_165843.1	chr3	159839678	159839878	+	1	NA	NA	NA	83	NM_026582	68151	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|Gpr177	wntless homolog (Drosophila)	protein-coding	0.070000	0.636816	
mm_93457.1	chr10	110337003	110337203	-	1	NA	NA	NA	-263547	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA	0.010000	0.313433	
mm_147886.1	chr18	64699953	64700153	-	1	NA	NA	NA	-39053	NM_001001488	54670	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0.025000	0.502488	
mm_33022.1	chr4	121052937	121053137	+	1	NA	NA	NA	13471	NM_007741	12840	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	0.045000	0.656716	
mm_119905.1	chr14	54949828	54950028	+	1	NA	NA	NA	-786	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.005000	0.562189	
mm_40837.1	chr5	73230370	73230570	+	1	NA	NA	NA	26148	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.000000	0.507463	
mm_29028.1	chr3	102166298	102166498	-	1	NA	NA	NA	38295	NM_177545	229658	Mm.118004	NM_177545	ENSMUSG00000027860	Vangl1	Kitenin|Lpp2|Stb2|Stbm	vang-like 1 (van gogh, Drosophila)	protein-coding	0.015000	0.527363	
mm_35883.1	chr4	49539668	49539868	-	1	NA	NA	NA	9778	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.015000	0.467662	
mm_13790.1	chr2	118861897	118862097	+	1	NA	NA	NA	-3	NM_019826	56357	Mm.6635	NM_019826	ENSMUSG00000027332	Ivd	1300016K07Rik|6720455E18Rik|AI463340	isovaleryl coenzyme A dehydrogenase	protein-coding	0.065000	0.592040	
mm_160070.1	chr7	6222097	6222297	+	1	NA	NA	NA	-81	NM_133204	170734	Mm.155595	NM_133204	ENSMUSG00000058028	Zscan5b	Zfg1|Zfp371	zinc finger and SCAN domain containing 5B	protein-coding	0.045000	0.492537	48(CCCTATATAAGC,+,0.00),48(CCCTATATAAGC,-,0.00)
mm_130598.1	chr15	99772502	99772702	-	1	NA	NA	NA	-87	NM_028015	71949	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	0.080000	0.716418	
mm_131823.1	chr16	22929545	22929745	+	1	NA	NA	NA	9423	NM_001083904	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.020000	0.472637	
mm_158558.1	chrX	150367062	150367262	-	1	NA	NA	NA	-53798	NM_001101501	333588	Mm.159296	NM_001101501		Gm15104	OTTMUSG00000018998	predicted gene 15104	protein-coding	0.115000	0.686567	
mm_53442.1	chr6	134396218	134396418	+	1	NA	NA	NA	-11	NM_025778	66813	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.015000	0.442786	
mm_122195.1	chr14	31780906	31781106	-	1	NA	NA	NA	49409	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.025000	0.422886	
mm_110538.1	chr12	55302522	55302722	-	1	NA	NA	NA	-15	NM_025373	66132	Mm.383213	NM_025373	ENSMUSG00000021023	1110008L16Rik	Kiaa0391|Mrpp3|mKIAA0391	RIKEN cDNA 1110008L16 gene	protein-coding	0.070000	0.597015	
mm_30861.1	chr4	30664509	30664709	+	1	NA	NA	NA	13	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	0.005000	0.437811	
mm_52864.1	chr6	122308727	122308927	+	1	NA	NA	NA	-183	NM_010749	17113	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	0.060000	0.567164	
mm_52527.1	chr6	115675894	115676094	+	1	NA	NA	NA	641	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.050000	0.577114	
mm_3198.1	chr1	135818599	135818799	+	1	NA	NA	NA	101	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding	0.135000	0.756219	
mm_149409.1	chr19	11407576	11407776	+	1	NA	NA	NA	15	NM_029499	64380	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	0.000000	0.462687	
mm_69606.1	chr7	137194538	137194738	-	1	NA	NA	NA	-40045	NR_045885	100038555	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	ENSMUSG00000073800	predicted gene 10578	ncRNA	0.010000	0.363184	-30(TGCCTTAAAAGT,-,0.00),-29(GCCTTAAAAGTG,+,0.00)
mm_2796.1	chr1	130851453	130851653	+	1	NA	NA	NA	-14224	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.010000	0.452736	
mm_165270.1	chr2	75704335	75704535	-	1	NA	NA	NA	228	NR_132727	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.060000	0.661692	
mm_57123.1	chr6	122599356	122599556	-	1	NA	NA	NA	2988	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.010000	0.467662	
mm_83070.1	chr9	37613502	37613702	-	1	NA	NA	NA	118	NM_011449	20686	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	0.070000	0.517413	
mm_17131.1	chr2	24927627	24927827	-	1	NA	NA	NA	7554	NR_027876	215705	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	0.010000	0.601990	
mm_124837.1	chr15	9279777	9279977	+	1	NA	NA	NA	48	NM_207216	105887	Mm.482274	NM_207216	ENSMUSG00000072664	Ugt3a1	AI746432	UDP glycosyltransferases 3 family, polypeptide A1	protein-coding	0.010000	0.472637	
mm_41765.1	chr5	103425146	103425346	+	1	NA	NA	NA	54	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.145000	0.761194	
mm_51270.1	chr6	72115110	72115310	+	1	NA	NA	NA	7730	NR_045163	71265	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.020000	0.497512	67(CAGTATTTAAGC,-,0.00)
mm_93859.1	chr10	122679328	122679528	-	1	NA	NA	NA	113	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.070000	0.691542	
mm_101102.1	chr11	11931629	11931829	-	1	NA	NA	NA	-33585	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.020000	0.318408	
mm_126670.1	chr15	84327028	84327228	+	1	NA	NA	NA	1009	NM_001162500	64099	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0.010000	0.527363	
mm_136612.1	chr17	5334744	5334944	+	1	NA	NA	NA	83923	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.010000	0.537313	
mm_87898.1	chr10	62071499	62071699	+	1	NA	NA	NA	39414	NM_027251	69894	Mm.294126	NM_027251	ENSMUSG00000020083	2010107G23Rik	AA545165	RIKEN cDNA 2010107G23 gene	protein-coding	0.025000	0.537313	
mm_40902.1	chr5	75180018	75180218	+	1	NA	NA	NA	3287	NR_105992	102465620		NR_105992	ENSMUSG00000099060	Mir7025	Gm27860|mmu-mir-7025	microRNA 7025	ncRNA	0.035000	0.532338	
mm_136889.1	chr17	13010423	13010623	+	1	NA	NA	NA	2684	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.005000	0.417910	-33(TTTTTTAAAGGT,+,0.00)
mm_26604.1	chr3	152210402	152210602	+	1	NA	NA	NA	44	NM_057172	51886	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	0.120000	0.611940	
mm_114733.1	chr13	83729363	83729563	+	1	NA	NA	NA	1357	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.050000	0.616915	
mm_33622.1	chr4	132716153	132716353	+	1	NA	NA	NA	16293	NM_201368	381560	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	0.015000	0.194030	
mm_90161.1	chr10	119107730	119107930	+	1	NA	NA	NA	14925	NR_045348	73400	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	0.020000	0.532338	
mm_125041.1	chr15	25776290	25776490	+	1	NA	NA	NA	-66908	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.030000	0.587065	
mm_89887.1	chr10	108690927	108691127	+	1	NA	NA	NA	9133	NM_203660	368203	Mm.452758	NM_203660		Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding	0.025000	0.562189	
mm_118432.1	chr14	8006496	8006696	+	1	NA	NA	NA	3630	NM_001331064	66082	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	0.015000	0.452736	
mm_8580.1	chr1	155812950	155813150	-	1	NA	NA	NA	-151	NM_001024945	104009	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx	quiescin Q6 sulfhydryl oxidase 1	protein-coding	0.120000	0.721393	
mm_42639.1	chr5	118560557	118560757	+	1	NA	NA	NA	-62	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.215000	0.870647	
mm_66455.1	chr7	44869705	44869905	-	1	NA	NA	NA	-17	NM_133949	84113	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0.045000	0.631841	
mm_68526.1	chr7	112158965	112159165	-	1	NA	NA	NA	-8	NM_015814	50781	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148	dickkopf WNT signaling pathway inhibitor 3	protein-coding	0.065000	0.641791	
mm_123074.1	chr14	55721777	55721977	-	1	NA	NA	NA	299	NM_019519	56187	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0.060000	0.636816	
mm_47286.1	chr5	122131866	122132066	-	1	NA	NA	NA	2927	NM_001289811	330188	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0.100000	0.671642	
mm_29723.1	chr3	125938407	125938607	-	1	NA	NA	NA	43	NM_011674	22239	Mm.306021	NM_011674	ENSMUSG00000032854	Ugt8a	AI850488|AW455908|Cgt|Ugt8|mCerGT	UDP galactosyltransferase 8A	protein-coding	0.150000	0.756219	
mm_155010.1	chrX	41401308	41401508	+	1	NA	NA	NA	107	NR_104053	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding	0.045000	0.522388	
mm_5178.1	chr1	12693284	12693484	-	1	NA	NA	NA	954	NM_001198566	240725	Mm.45563	NM_172294	ENSMUSG00000016918	Sulf1	AI467640|AW121680|mKIAA1077	sulfatase 1	protein-coding	0.035000	0.537313	
mm_23108.1	chr3	37420303	37420503	+	1	NA	NA	NA	453	NM_021343	57815	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0.105000	0.676617	
mm_157254.1	chrX	19150781	19150981	-	1	NA	NA	NA	-3910	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.000000	0.398010	-98(TTTTTTAAAGTG,+,0.00)
mm_71761.1	chr8	66392068	66392268	+	1	NA	NA	NA	5867	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.000000	0.417910	35(CAGTTTAAAAAG,-,0.00),37(GTTTAAAAAGCC,+,0.00)
mm_68640.1	chr7	118443436	118443636	-	1	NA	NA	NA	16	NM_138649	110058	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk	synaptotagmin XVII	protein-coding	0.035000	0.547264	
mm_56490.1	chr6	99192940	99193140	-	1	NA	NA	NA	73475	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.010000	0.398010	
mm_129271.1	chr15	77017550	77017750	-	1	NA	NA	NA	5077	NM_001164048	17189	Mm.404074	NM_013593	ENSMUSG00000018893	Mb	AI325109	myoglobin	protein-coding	0.025000	0.557214	
mm_122587.1	chr14	50870464	50870664	-	1	NA	NA	NA	-10	NM_009351	21745	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	0.055000	0.636816	
mm_3312.1	chr1	137905945	137906145	+	1	NA	NA	NA	-60410	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.000000	0.422886	54(TTGTTTAAAAGA,-,0.00)
mm_167734.1	chr9	106126991	106127191	-	1	NA	NA	NA	-27033	NR_029549	387153		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	0.000000	0.592040	
mm_93130.1	chr10	92077964	92078164	-	1	NA	NA	NA	-5879	NR_029812	723955		NR_029812	ENSMUSG00000065524	Mir135a-2	Mirn135a-2|mir-135a-2	microRNA 135a-2	ncRNA	0.000000	0.373134	
mm_115733.1	chr13	17776395	17776595	-	1	NA	NA	NA	28602	NM_001081058	69562	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.005000	0.363184	
mm_23054.1	chr3	35754002	35754202	+	1	NA	NA	NA	-36	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.130000	0.781095	
mm_65530.1	chr7	25788573	25788773	-	1	NA	NA	NA	60	NM_001190974	26362	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.040000	0.706468	
mm_105866.1	chr11	114186650	114186850	-	1	NA	NA	NA	-11508	NR_045930	73536	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.015000	0.552239	-34(CCTCTAAGAGTC,+,0.00)
mm_48657.1	chr5	145875121	145875321	-	1	NA	NA	NA	4633	NM_007818	13112	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	0.000000	0.427861	
mm_84219.1	chr9	61924964	61925164	-	1	NA	NA	NA	-10554	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.035000	0.482587	
mm_63538.1	chr7	128003793	128003993	+	1	NA	NA	NA	-485	NM_001079932	434246	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	0.010000	0.517413	
mm_117742.1	chr13	95883958	95884158	-	1	NA	NA	NA	7864	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.000000	0.477612	
mm_39657.1	chr5	24919490	24919690	+	1	NA	NA	NA	-11081	NM_001170555	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.015000	0.522388	
mm_29042.1	chr3	102964031	102964231	-	1	NA	NA	NA	2	NM_201622	381463	Mm.331269	NM_198658	ENSMUSG00000048938	Nr1h5	Fxrb	nuclear receptor subfamily 1, group H, member 5	protein-coding	0.010000	0.462687	
mm_79463.1	chr9	56418771	56418971	+	1	NA	NA	NA	25	NM_025812	66867	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0.040000	0.532338	
mm_38178.1	chr4	135271066	135271266	-	1	NA	NA	NA	1594	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.010000	0.417910	
mm_150228.1	chr19	33970674	33970874	+	1	NA	NA	NA	9526	NM_026334	67717	Mm.329816	NM_026334	ENSMUSG00000024768	Lipf	2310051B21Rik|AV082900	lipase, gastric	protein-coding	0.020000	0.422886	
mm_67603.1	chr7	83744743	83744943	-	1	NA	NA	NA	-9353	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.015000	0.567164	
mm_11770.1	chr2	38823151	38823351	+	1	NA	NA	NA	-29484	NR_029568	387176		NR_029568	ENSMUSG00000065423	Mir181a-2	Mirn181|Mirn181a|Mirn181a-2|miR-181|mir-181a|mir-181a-2	microRNA 181a-2	ncRNA	0.020000	0.467662	
mm_64329.1	chr7	142222061	142222261	+	1	NA	NA	NA	7810	NM_001037822	114666	Mm.444495	NM_001037822	ENSMUSG00000073785	Krtap5-5	A030001H12Rik|AI586182|BB149782	keratin associated protein 5-5	protein-coding	0.005000	0.497512	
mm_168428.1	chr11	33754707	33754907	-	1	NA	NA	NA	88778	NM_027398	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.085000	0.567164	-44(AACTTTAAATGG,-,0.00)
mm_123469.1	chr14	65973320	65973520	-	1	NA	NA	NA	4937	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.020000	0.497512	
mm_122509.1	chr14	47167657	47167857	-	1	NA	NA	NA	21645	NM_008102	14528	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	0.000000	0.333333	
mm_38198.1	chr4	135494377	135494577	-	1	NA	NA	NA	27	NM_028995	74552	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	0.040000	0.557214	
mm_54075.1	chr6	14755081	14755281	-	1	NA	NA	NA	93	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	0.025000	0.452736	
mm_108198.1	chr12	76837375	76837575	+	1	NA	NA	NA	8	NM_145927	110606	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	0.070000	0.517413	
mm_207.1	chr1	16619383	16619583	+	1	NA	NA	NA	-145	NM_001271017	66799	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0.085000	0.661692	
mm_73468.1	chr8	106668673	106668873	+	1	NA	NA	NA	-14295	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.000000	0.373134	
mm_68146.1	chr7	102249317	102249517	-	1	NA	NA	NA	701	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.015000	0.447761	
mm_170189.1	chr17	6477040	6477240	-	1	NA	NA	NA	-26146	NR_033520	547127	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	0.160000	0.746269	
mm_29725.1	chr3	125938471	125938671	-	1	NA	NA	NA	-21	NM_011674	22239	Mm.306021	NM_011674	ENSMUSG00000032854	Ugt8a	AI850488|AW455908|Cgt|Ugt8|mCerGT	UDP galactosyltransferase 8A	protein-coding	0.160000	0.796020	
mm_134239.1	chr16	12690773	12690973	-	1	NA	NA	NA	-120517	NR_040507	75493	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.000000	0.363184	
mm_51266.1	chr6	72097729	72097929	+	1	NA	NA	NA	221	NM_011375	20454	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.120000	0.741294	
mm_149865.1	chr19	25131982	25132182	+	1	NA	NA	NA	-105120	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.035000	0.572139	
mm_70321.1	chr8	4250339	4250539	+	1	NA	NA	NA	2225	NM_001195258	100044509	Mm.439193	NM_001195258	ENSMUSG00000089736	Tgfbr3l	Gm14378|OTTMUSG00000016477	transforming growth factor, beta receptor III-like	protein-coding	0.050000	0.636816	
mm_117055.1	chr13	58401455	58401655	-	1	NA	NA	NA	614	NM_001301343	15387	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.165000	0.761194	
mm_138169.1	chr17	34264663	34264863	+	1	NA	NA	NA	1536	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.130000	0.676617	
mm_147682.1	chr18	60718585	60718785	-	1	NA	NA	NA	-5296	NM_008306	15531	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.015000	0.577114	
mm_121380.1	chr14	118854866	118855066	+	1	NA	NA	NA	16	NM_001160099	58187	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0.100000	0.701493	
mm_141363.1	chr17	28909295	28909495	-	1	NA	NA	NA	4130	NR_045457	74179	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	0.055000	0.611940	
mm_64508.1	chr7	143627956	143628156	+	1	NA	NA	NA	-211	NM_175649	244237	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	0.010000	0.388060	
mm_150080.1	chr19	29386901	29387101	+	1	NA	NA	NA	19563	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.298507	
mm_45990.1	chr5	90501426	90501626	-	1	NA	NA	NA	10812	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.010000	0.393035	
mm_49373.1	chr6	24528115	24528315	+	1	NA	NA	NA	71	NM_080847	78910	Mm.160150	NM_080847	ENSMUSG00000029685	Asb15	4930400E23Rik|Asb-15	ankyrin repeat and SOCS box-containing 15	protein-coding	0.020000	0.393035	-56(GGCTTTATAAAA,-,0.00),-54(CTTTATAAAAGA,-,0.00)
mm_42181.1	chr5	112261937	112262137	+	1	NA	NA	NA	6217	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.000000	0.417910	
mm_118884.1	chr14	26357418	26357618	+	1	NA	NA	NA	-29	NR_038005	71106	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.010000	0.616915	59(CCTCTAAGAGTC,+,0.00)
mm_28492.1	chr3	92484266	92484466	-	1	NA	NA	NA	1515	NM_009264	20753	Mm.331191	NM_009264	ENSMUSG00000050359	Sprr1a	AI528815|SPR1a|mSPRR1A	small proline-rich protein 1A	protein-coding	0.010000	0.636816	
mm_144082.1	chr17	92949297	92949497	-	1	NA	NA	NA	-249620	NM_001315503	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.020000	0.437811	
mm_90018.1	chr10	115362483	115362683	+	1	NA	NA	NA	-321	NM_133683	67226	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0.070000	0.522388	
mm_44551.1	chr5	24598824	24599024	-	1	NA	NA	NA	3078	NM_025891	66993	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.075000	0.661692	
mm_25896.1	chr3	131110726	131110926	+	1	NA	NA	NA	529	NM_001276402	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.040000	0.482587	
mm_77937.1	chr9	7355238	7355438	+	1	NA	NA	NA	7964	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.407960	
mm_37645.1	chr4	128618517	128618717	-	1	NA	NA	NA	2	NM_205823	384059	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0.030000	0.552239	
mm_45895.1	chr5	88675109	88675309	-	1	NA	NA	NA	371	NM_001098476	231413	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.075000	0.671642	
mm_79278.1	chr9	50775258	50775458	+	1	NA	NA	NA	133	NR_045601	102580	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	0.125000	0.651741	
mm_141876.1	chr17	34850084	34850284	-	1	NA	NA	NA	20	NM_021337	108077	Mm.18845	NM_021337	ENSMUSG00000040356	Skiv2l	4930534J06Rik|AW214248|Ddx13|SKI|Ski2w	superkiller viralicidic activity 2-like (S. cerevisiae)	protein-coding	0.085000	0.676617	
mm_150358.1	chr19	34649034	34649234	+	1	NA	NA	NA	8245	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.005000	0.407960	
mm_30413.1	chr3	152264947	152265147	-	1	NA	NA	NA	1273	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.025000	0.442786	
mm_36500.1	chr4	83389902	83390102	-	1	NA	NA	NA	666	NR_045450	790913	Mm.406752	NR_045450	ENSMUSG00000086321	Gm11413	OTTMUSG00000000829	predicted gene 11413	ncRNA	0.005000	0.437811	
mm_138772.1	chr17	37193793	37193993	+	1	NA	NA	NA	1	NM_023137	24108	Mm.140210	NM_023137	ENSMUSG00000035186	Ubd	FAT10	ubiquitin D	protein-coding	0.005000	0.432836	
mm_36762.1	chr4	101356413	101356613	-	1	NA	NA	NA	-265	NR_040708	77866	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0.200000	0.850746	
mm_321.1	chr1	24678534	24678734	+	1	NA	NA	NA	90	NM_026719	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.120000	0.721393	
mm_82524.1	chr9	20643106	20643306	-	1	NA	NA	NA	-112	NM_025401	66177	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.040000	0.547264	
mm_101293.1	chr11	22058370	22058570	-	1	NA	NA	NA	-56819	NM_011023	18423	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.010000	0.407960	
mm_27192.1	chr3	34757845	34758045	-	1	NA	NA	NA	-14130	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA	0.045000	0.552239	
mm_160401.1	chr8	70856897	70857097	-	1	NA	NA	NA	11	NM_032397	84036	Mm.32074	NM_032397	ENSMUSG00000002908	Kcnn1	AI854248|KCa2.1|SK1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1	protein-coding	0.085000	0.726368	
mm_115293.1	chr13	111978008	111978208	+	1	NA	NA	NA	110172	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.050000	0.557214	
mm_76361.1	chr8	84772462	84772662	-	1	NA	NA	NA	1807	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.015000	0.502488	
mm_121922.1	chr14	23524683	23524883	-	1	NA	NA	NA	-430212	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA	0.000000	0.338308	
mm_119217.1	chr14	33216490	33216690	+	1	NA	NA	NA	-233	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.010000	0.472637	
mm_37093.1	chr4	116597524	116597724	-	1	NA	NA	NA	6	NR_029450	654318	Mm.255685	NR_029450	ENSMUSG00000085408	C530005A16Rik	D930044c15rik	RIKEN cDNA C530005A16 gene	ncRNA	0.055000	0.616915	
mm_135898.1	chr16	65562628	65562828	-	1	NA	NA	NA	-31	NM_026879	68942	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0.110000	0.661692	
mm_110286.1	chr12	32123571	32123771	-	1	NA	NA	NA	-62392	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.015000	0.447761	
mm_132346.1	chr16	33885234	33885434	+	1	NA	NA	NA	55669	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.010000	0.412935	
mm_140907.1	chr17	24163551	24163751	-	1	NA	NA	NA	82	NM_172935	245847	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	0.100000	0.691542	
mm_153040.1	chr19	32061274	32061474	-	1	NA	NA	NA	41766	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.005000	0.437811	
mm_70967.1	chr8	27038061	27038261	+	1	NA	NA	NA	-4394	NM_001039078	114863	Mm.277501	NM_054057	ENSMUSG00000031485	Prosc	1700024N20Rik|2200002F22Rik	proline synthetase co-transcribed	protein-coding	0.010000	0.452736	
mm_23560.1	chr3	62435561	62435761	+	1	NA	NA	NA	71327	NM_028136	72162	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	0.005000	0.383085	
mm_36530.1	chr4	86611868	86612068	-	1	NA	NA	NA	54	NM_173400	230376	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	0.090000	0.656716	
mm_111210.1	chr12	84399663	84399863	-	1	NA	NA	NA	1171	NM_001286058	12499	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0.025000	0.482587	
mm_64426.1	chr7	142577431	142577631	+	1	NA	NA	NA	-384	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.025000	0.572139	19(CTCTCTAAGAGC,-,0.00)
mm_117336.1	chr13	69534049	69534249	-	1	NA	NA	NA	-285	NM_001169131	210106	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.145000	0.776119	
mm_89228.1	chr10	87521829	87522029	+	1	NA	NA	NA	134	NM_008777	18478	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0.010000	0.532338	
mm_119929.1	chr14	54969199	54969399	+	1	NA	NA	NA	512	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.015000	0.527363	-6(TCTTTTAGGCTC,+,0.00)
mm_124544.1	chr14	122473411	122473611	-	1	NA	NA	NA	1688	NR_045046	69248	Mm.235369	NR_045046	ENSMUSG00000085555	2610035F20Rik	-	RIKEN cDNA 2610035F20 gene	ncRNA	0.025000	0.512438	-32(TCATTTAAAGAC,+,0.00)
mm_137152.1	chr17	23680948	23681148	+	1	NA	NA	NA	1683	NM_018777	54419	Mm.86421	NM_018777	ENSMUSG00000023906	Cldn6	AL024037	claudin 6	protein-coding	0.015000	0.557214	
mm_138106.1	chr17	34119472	34119672	+	1	NA	NA	NA	328	NR_037970	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.090000	0.636816	
mm_22951.1	chr3	32365245	32365445	+	1	NA	NA	NA	-144	NR_027966	67576	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	0.110000	0.701493	
mm_120069.1	chr14	57056572	57056772	+	1	NA	NA	NA	1051	NM_001271623	14611	Mm.57207	NM_016975	ENSMUSG00000048582	Gja3	Cnx46|Cx43|Cx46|Gja-3	gap junction protein, alpha 3	protein-coding	0.020000	0.422886	
mm_89318.1	chr10	87930669	87930869	+	1	NA	NA	NA	-35902	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.015000	0.442786	
mm_93714.1	chr10	118869699	118869899	-	1	NA	NA	NA	-896	NM_001014390	69181	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.045000	0.606965	
mm_27038.1	chr3	26331740	26331940	-	1	NA	NA	NA	69	NM_138666	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.100000	0.671642	
mm_59598.1	chr7	28139685	28139885	+	1	NA	NA	NA	10319	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.040000	0.646766	
mm_164555.1	chr17	14202427	14202627	+	1	NA	NA	NA	1304	NM_172826	240025	Mm.79993	NM_172826	ENSMUSG00000048826	Dact2	2900084M21Rik|A630024E20|Dpr2|Frd2|dapper2	dishevelled-binding antagonist of beta-catenin 2	protein-coding	0.025000	0.597015	
mm_133064.1	chr16	58622525	58622725	+	1	NA	NA	NA	-5647	NM_001033404	328695	Mm.293308	NM_001033404	ENSMUSG00000075002	Gm813	Gm1781	predicted gene 813	protein-coding	0.005000	0.507463	-38(CTCTCTTAAAAG,-,0.00),-37(TCTCTTAAAAGG,-,0.00),-36(CTCTTAAAAGGG,+,0.00),-35(TCTTAAAAGGGG,+,0.00)
mm_101780.1	chr11	45753512	45753712	-	1	NA	NA	NA	-54471	NR_045876	100009664	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.010000	0.522388	-32(TGCTATAAATGC,-,0.00)
mm_60683.1	chr7	45154265	45154465	+	1	NA	NA	NA	62	NM_001278207	68845	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	0.115000	0.691542	
mm_10327.1	chr2	11339416	11339616	+	1	NA	NA	NA	27	NR_040369	100503147	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	OTTMUSG00000011311	predicted gene 13293	ncRNA	0.025000	0.527363	
mm_44920.1	chr5	35728992	35729192	-	1	NA	NA	NA	184	NM_194344	231147	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.030000	0.676617	
mm_120252.1	chr14	63011587	63011787	+	1	NA	NA	NA	-84	NM_001039121	654458	Mm.390737	NM_001039121	ENSMUSG00000075572	Defb43	BD-43|EG654458|mBD-43	defensin beta 43	protein-coding	0.020000	0.482587	
mm_133154.1	chr16	70321078	70321278	+	1	NA	NA	NA	7229	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.010000	0.452736	
mm_105440.1	chr11	104377279	104377479	-	1	NA	NA	NA	64912	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.010000	0.383085	
mm_47564.1	chr5	124439466	124439666	-	1	NA	NA	NA	-364	NM_030241	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.035000	0.492537	
mm_51058.1	chr6	65671511	65671711	+	1	NA	NA	NA	0	NM_172399	68169	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding	0.095000	0.726368	
mm_50956.1	chr6	58833612	58833812	+	1	NA	NA	NA	12	NM_028705	73998	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0.005000	0.452736	
mm_77602.1	chr8	123892880	123893080	-	1	NA	NA	NA	1795	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.060000	0.611940	
mm_103748.1	chr11	80383066	80383266	-	1	NA	NA	NA	-113	NM_001130169	22680	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0.065000	0.542289	
mm_147381.1	chr18	43737100	43737300	-	1	NA	NA	NA	37	NM_009258	20730	Mm.272	NM_009258	ENSMUSG00000024503	Spink1	Spink3|p12	serine peptidase inhibitor, Kazal type 1	protein-coding	0.005000	0.462687	
mm_72014.1	chr8	70703956	70704156	+	1	NA	NA	NA	6317	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.005000	0.502488	
mm_164295.1	chr15	103895904	103896104	-	1	NA	NA	NA	3296	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.005000	0.328358	
mm_42202.1	chr5	112326289	112326489	+	1	NA	NA	NA	20	NM_018783	54723	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	0.120000	0.681592	
mm_3639.1	chr1	152812383	152812583	+	1	NA	NA	NA	12330	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.010000	0.427861	
mm_81501.1	chr9	110034456	110034656	+	1	NA	NA	NA	-17465	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.015000	0.502488	
mm_120287.1	chr14	63133899	63134099	+	1	NA	NA	NA	11537	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.005000	0.537313	
mm_96583.1	chr11	69088388	69088588	+	1	NA	NA	NA	-40	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.160000	0.781095	
mm_120520.1	chr14	66784410	66784610	+	1	NA	NA	NA	84090	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.015000	0.472637	
mm_149635.1	chr19	17369983	17370183	+	1	NA	NA	NA	2761	NM_010265	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.010000	0.447761	
mm_125176.1	chr15	31568788	31568988	+	1	NA	NA	NA	-24	NM_181588	69574	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0.030000	0.601990	
mm_126427.1	chr15	80572512	80572712	+	1	NA	NA	NA	15	NM_001289442	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.030000	0.532338	
mm_143334.1	chr17	66483737	66483937	-	1	NA	NA	NA	-34087	NM_001114098	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.010000	0.542289	
mm_7752.1	chr1	131097706	131097906	-	1	NA	NA	NA	37	NM_008551	17164	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.125000	0.751244	-65(TCCCCTTTAAGG,-,0.00),-63(CCCTTTAAGGAC,+,0.00)
mm_167089.1	chr7	104513548	104513748	+	1	NA	NA	NA	-5799	NM_001167828	209387	Mm.277377	NM_199146	ENSMUSG00000057596	Trim30d	AI451617|TRIM30-3|Trim79	tripartite motif-containing 30D	protein-coding	0.020000	0.477612	-33(TGCCTTTAAAAG,-,0.00),-32(GCCTTTAAAAGC,+,0.00),-32(GCCTTTAAAAGC,-,0.00),-31(CCTTTAAAAGCT,+,0.00)
mm_170289.1	chr18	2999994	3000194	+	1	NA	NA	NA	123318	NM_001167539	100312476	Mm.480293	NM_001167539	ENSMUSG00000091539	Vmn1r238	-	vomeronasal 1 receptor, 238	protein-coding	0.025907	0.484536	
mm_3143.1	chr1	135144484	135144684	+	1	NA	NA	NA	-2250	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.015000	0.537313	
mm_69565.1	chr7	135700468	135700668	-	1	NA	NA	NA	15811	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.005000	0.422886	
mm_13189.1	chr2	93191014	93191214	+	1	NA	NA	NA	3530	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.005000	0.467662	
mm_50524.1	chr6	49043987	49044187	+	1	NA	NA	NA	7569	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.020000	0.537313	
mm_143166.1	chr17	57225926	57226126	-	1	NA	NA	NA	2110	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.015000	0.562189	
mm_171565.1	chr4	147305508	147305708	+	1	NA	NA	NA	129742	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.020000	0.517413	
mm_70381.1	chr8	10249095	10249295	+	1	NA	NA	NA	95284	NM_001319151	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.025000	0.512438	
mm_52203.1	chr6	100800822	100801022	+	1	NA	NA	NA	-32716	NM_182939	232314	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	0.005000	0.447761	
mm_171909.1	chr5	49544721	49544921	-	1	NA	NA	NA	-259162	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.060000	0.626866	
mm_166298.1	chr5	104113857	104114057	-	1	NA	NA	NA	131	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding	0.035000	0.497512	
mm_13113.1	chr2	91586032	91586232	+	1	NA	NA	NA	-9949	NR_028553	100217458		NR_028553	ENSMUSG00000077221	Snord67	MBII-166	small nucleolar RNA, C/D box 67	snoRNA	0.005000	0.353234	
mm_127544.1	chr15	102118984	102119184	+	1	NA	NA	NA	16096	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.005000	0.537313	
mm_11378.1	chr2	31171856	31172056	+	1	NA	NA	NA	19640	NM_178760	277463	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0.010000	0.502488	
mm_109541.1	chr12	111583547	111583747	+	1	NA	NA	NA	9137	NM_022801	17169	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	0.020000	0.482587	
mm_106723.1	chr12	3865016	3865216	+	1	NA	NA	NA	-2872	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.015000	0.472637	
mm_123889.1	chr14	72709956	72710156	-	1	NA	NA	NA	-53	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.170000	0.766169	
mm_62725.1	chr7	110773800	110774000	+	1	NA	NA	NA	1296	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.025000	0.587065	
mm_57504.1	chr6	125460510	125460710	-	1	NA	NA	NA	34145	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.030000	0.432836	
mm_18767.1	chr2	73485593	73485793	-	1	NA	NA	NA	60	NM_001289723	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.030000	0.542289	-39(CGGTTTAAGAGG,-,0.00)
mm_146339.1	chr18	82475088	82475288	+	1	NA	NA	NA	65	NM_001025245	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.110000	0.756219	
mm_102341.1	chr11	58010533	58010733	-	1	NA	NA	NA	1569	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.030000	0.497512	
mm_42256.1	chr5	114005852	114006052	+	1	NA	NA	NA	1144	NM_001286396	13142	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	0.000000	0.437811	
mm_112365.1	chr12	119160699	119160899	-	1	NA	NA	NA	77477	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.000000	0.238806	
mm_69404.1	chr7	132317169	132317369	-	1	NA	NA	NA	-114	NM_029935	77590	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.065000	0.577114	
mm_113219.1	chr13	27057478	27057678	+	1	NA	NA	NA	8	NM_011164	19109	Mm.1270	NM_011164	ENSMUSG00000021342	Prl	AV290867|Gha1|Prl1a1	prolactin	protein-coding	0.005000	0.442786	-35(GTTTATAAAGCC,+,0.00)
mm_149558.1	chr19	12654865	12655065	+	1	NA	NA	NA	-19214	NM_146697	258692	Mm.223127	NM_146697	ENSMUSG00000044441	Olfr1442	MOR202-9	olfactory receptor 1442	protein-coding	0.010000	0.343284	
mm_150070.1	chr19	29386529	29386729	+	1	NA	NA	NA	19191	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.010000	0.512438	
mm_106256.1	chr11	117871787	117871987	-	1	NA	NA	NA	1639	NM_027919	71776	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.020000	0.512438	
mm_30362.1	chr3	151837335	151837535	-	1	NA	NA	NA	93	NM_008966	19220	Mm.331442	NM_008966	ENSMUSG00000028036	Ptgfr	AI957154|PGF|fp	prostaglandin F receptor	protein-coding	0.040000	0.626866	
mm_9180.1	chr1	171058521	171058721	-	1	NA	NA	NA	782	NM_010188	14131	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	0.015000	0.502488	
mm_44770.1	chr5	31766805	31767005	-	1	NA	NA	NA	68855	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.010000	0.417910	
mm_2809.1	chr1	130865964	130866164	+	1	NA	NA	NA	287	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.010000	0.502488	
mm_87185.1	chr10	39369634	39369834	+	1	NA	NA	NA	-65	NM_001122892	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.115000	0.701493	
mm_98152.1	chr11	87595592	87595792	+	1	NA	NA	NA	3475	NM_133215	170749	Mm.399376	NM_133215	ENSMUSG00000018401	Mtmr4	AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647	myotubularin related protein 4	protein-coding	0.095000	0.746269	
mm_138121.1	chr17	34145148	34145348	+	1	NA	NA	NA	-168	NM_010388	15000	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0.005000	0.527363	
mm_41042.1	chr5	86090859	86091059	+	1	NA	NA	NA	19213	NM_001310639	56792	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.010000	0.383085	-60(GTTTTTATGCAG,+,0.00)
mm_147218.1	chr18	37997456	37997656	-	1	NA	NA	NA	18	NM_139206	106952	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	0.005000	0.557214	
mm_5314.1	chr1	22512476	22512676	-	1	NA	NA	NA	-79733	NM_183018	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.055000	0.552239	
mm_146562.1	chr18	6241418	6241618	-	1	NA	NA	NA	6	NM_008448	16573	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.105000	0.731343	
mm_61305.1	chr7	67951987	67952187	+	1	NA	NA	NA	-170	NM_010513	16001	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.140000	0.746269	
mm_109595.1	chr12	112644772	112644972	+	1	NA	NA	NA	44	NM_013929	30954	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.160000	0.756219	
mm_43218.1	chr5	129746927	129747127	+	1	NA	NA	NA	21952	NM_008095	14467	Mm.12468	NM_008095	ENSMUSG00000029432	Gbas	AV006093|Nipsnap2	glioblastoma amplified sequence	protein-coding	0.015000	0.517413	
mm_18226.1	chr2	51437795	51437995	-	1	NA	NA	NA	5	NR_130155	73375	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	0.015000	0.487562	
mm_159587.1	chr4	123116187	123116387	+	1	NA	NA	NA	39	NM_181859	353371	Mm.189660	NM_181859	ENSMUSG00000076438	Oxct2b	Scot-t2	3-oxoacid CoA transferase 2B	protein-coding	0.075000	0.666667	
mm_5539.1	chr1	38129660	38129860	-	1	NA	NA	NA	-98	NM_019570	56210	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	0.170000	0.845771	
mm_85663.1	chr9	107675194	107675394	-	1	NA	NA	NA	4298	NM_008140	14685	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.010000	0.592040	
mm_136295.1	chr16	91466560	91466760	-	1	NA	NA	NA	1556	NR_077219	100503120	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.015000	0.472637	
mm_1476.1	chr1	70725824	70726024	+	1	NA	NA	NA	209	NM_001310658	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding	0.015000	0.487562	
mm_84996.1	chr9	86695828	86696028	-	1	NA	NA	NA	-14	NM_008615	17436	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding	0.160000	0.815920	
mm_64993.1	chr7	16917590	16917790	-	1	NA	NA	NA	6342	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.020000	0.562189	
mm_161730.1	chr17	29887671	29887871	-	1	NA	NA	NA	111	NM_001081160	74762	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0.075000	0.721393	
mm_15572.1	chr2	158666522	158666722	+	1	NA	NA	NA	-111	NM_153089	228852	Mm.150540	NM_153089	ENSMUSG00000037754	Ppp1r16b	ANKRD4|C130078N17Rik|TIMAP|Wdt4	protein phosphatase 1, regulatory (inhibitor) subunit 16B	protein-coding	0.020000	0.517413	
mm_16082.1	chr2	168579277	168579477	+	1	NA	NA	NA	10988	NM_001291178	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.010000	0.487562	
mm_71997.1	chr8	70619088	70619288	+	1	NA	NA	NA	2344	NM_153074	211228	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0.045000	0.597015	
mm_133578.1	chr16	91406935	91407135	+	1	NA	NA	NA	800	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.015000	0.502488	
mm_121080.1	chr14	99099372	99099572	+	1	NA	NA	NA	48	NM_029320	52023	Mm.22835	NM_029320	ENSMUSG00000022064	Pibf1	-	progesterone immunomodulatory binding factor 1	protein-coding	0.110000	0.761194	
mm_34686.1	chr4	151862560	151862760	+	1	NA	NA	NA	-892	NM_001195565	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.085000	0.611940	-77(CCTTTTCTAGCG,+,0.00)
mm_15208.1	chr2	154213913	154214113	+	1	NA	NA	NA	-9729	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.015000	0.582090	
mm_152229.1	chr19	8707928	8708128	-	1	NA	NA	NA	5869	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.035000	0.542289	
mm_151177.1	chr19	53311283	53311483	+	1	NA	NA	NA	877	NM_001008542	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.030000	0.407960	
mm_24895.1	chr3	96172233	96172433	+	1	NA	NA	NA	-173	NM_153053	107701	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	0.065000	0.557214	
mm_172906.1	chr9	59375676	59375876	-	1	NA	NA	NA	-22268	NM_175325	102774	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	0.035000	0.517413	-33(GGGTATTTAAGG,-,0.00)
mm_173056.1	chrX	125104210	125104410	+	1	NA	NA	NA	-968400	NM_001100616	100038941	Mm.388852	NM_001100616	ENSMUSG00000072049	Vmn2r121	EG625699	vomeronasal 2, receptor 121	protein-coding	0.030000	0.562189	
mm_112481.1	chr13	5869024	5869224	+	1	NA	NA	NA	7635	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.000000	0.248756	
mm_130705.1	chr15	100720087	100720287	-	1	NA	NA	NA	290	NM_001161768	207839	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	0.025000	0.482587	
mm_61489.1	chr7	75703189	75703389	+	1	NA	NA	NA	-145049	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.005000	0.398010	
mm_113438.1	chr13	34883494	34883694	+	1	NA	NA	NA	8100	NM_013830	19134	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	0.010000	0.462687	
mm_120488.1	chr14	65979617	65979817	+	1	NA	NA	NA	11234	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.030000	0.567164	
mm_133153.1	chr16	70315655	70315855	+	1	NA	NA	NA	1806	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.005000	0.253731	
mm_85661.1	chr9	107674834	107675034	-	1	NA	NA	NA	4658	NM_008140	14685	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.010000	0.532338	
mm_62966.1	chr7	119794030	119794230	+	1	NA	NA	NA	0	NM_028129	434234	Mm.38237	NM_028129	ENSMUSG00000030924	2610020H08Rik	-	RIKEN cDNA 2610020H08 gene	protein-coding	0.125000	0.661692	
mm_130805.1	chr15	101709635	101709835	-	1	NA	NA	NA	3156	NM_027011	110308	Mm.451847	NM_027011	ENSMUSG00000061527	Krt5	3300001P10Rik|AW146334|CK5|K5|Krt2-5|Tfip8	keratin 5	protein-coding	0.020000	0.467662	
mm_115668.1	chr13	12501900	12502100	-	1	NA	NA	NA	18450	NM_133643	171211	Mm.159671	NM_133643	ENSMUSG00000095105	Edaradd	1810032E07Rik|5830469M23Rik|A630043P06|cr	EDAR (ectodysplasin-A receptor)-associated death domain	protein-coding	0.005000	0.427861	
mm_71963.1	chr8	70529281	70529481	+	1	NA	NA	NA	1535	NM_001199631	14232	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|Fkbp38	FK506 binding protein 8	protein-coding	0.020000	0.597015	
mm_159147.1	chr2	87693830	87694030	-	1	NA	NA	NA	17	NM_146659	258653	Mm.377616	NM_146659	ENSMUSG00000075151	Olfr1136	MOR177-3	olfactory receptor 1136	protein-coding	0.000000	0.308458	
mm_24320.1	chr3	89430489	89430689	+	1	NA	NA	NA	-151	NM_001293767	68911	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	0.105000	0.756219	
mm_156139.1	chrX	128261657	128261857	+	1	NA	NA	NA	-525203	NM_001281537	73934	Mm.159093	NM_001281537	ENSMUSG00000043569	Cldn34c4	4930412D23Rik	claudin 34C4	protein-coding	0.030000	0.472637	
mm_132423.1	chr16	35541207	35541407	+	1	NA	NA	NA	-55	NM_013661	20357	Mm.42015	NM_013661	ENSMUSG00000052133	Sema5b	AI893641|SemG|Semag|mKIAA1445	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	protein-coding	0.095000	0.736318	
mm_95340.1	chr11	46821364	46821564	+	1	NA	NA	NA	10665	NM_178759	276891	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.005000	0.512438	
mm_43576.1	chr5	137746089	137746289	+	1	NA	NA	NA	220	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.060000	0.621891	
mm_59777.1	chr7	28836544	28836744	+	1	NA	NA	NA	2474	NM_010707	16857	Mm.210336	NM_010707		Lgals6	galectin-6	lectin, galactose binding, soluble 6	protein-coding	0.005000	0.417910	
mm_84720.1	chr9	73968938	73969138	-	1	NA	NA	NA	-35471	NM_001081153	208898	Mm.41035	NM_001081153	ENSMUSG00000062151	Unc13c	1500037O19Rik|AU019458|D9Ertd414e|Munc13-3|Unc13h3	unc-13 homolog C (C. elegans)	protein-coding	0.030000	0.601990	
mm_119694.1	chr14	53598740	53598940	+	1	NA	NA	NA	655089	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.512438	
mm_101027.1	chr11	8579383	8579583	-	1	NA	NA	NA	85052	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.010000	0.447761	
mm_90454.1	chr10	127713939	127714139	+	1	NA	NA	NA	8783	NM_001081219	432516	Mm.90450	NM_001081219	ENSMUSG00000025401	Myo1a	BBM-I|Myhl	myosin IA	protein-coding	0.045000	0.557214	
mm_116621.1	chr13	48880045	48880245	-	1	NA	NA	NA	-9260	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.010000	0.343284	
mm_138467.1	chr17	35186787	35186987	+	1	NA	NA	NA	1553	NM_010734	16988	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	0.015000	0.547264	-7(CCTTTTCTAGCA,+,0.00)
mm_40897.1	chr5	75155779	75155979	+	1	NA	NA	NA	-287	NM_001083316	18595	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.055000	0.641791	
mm_47015.1	chr5	115488847	115489047	-	1	NA	NA	NA	-4463	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.040000	0.472637	
mm_48873.1	chr5	150665119	150665319	-	1	NA	NA	NA	393	NM_201369	381695	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|zag1	NEDD4 binding protein 2-like 2	protein-coding	0.080000	0.671642	
mm_18372.1	chr2	59948074	59948274	-	1	NA	NA	NA	-65568	NM_028118	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.030000	0.507463	
mm_165833.1	chr3	154663915	154664115	+	1	NA	NA	NA	-47118	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.040000	0.601990	
mm_112905.1	chr13	20902830	20903030	+	1	NA	NA	NA	108817	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.477612	
mm_132626.1	chr16	38902211	38902411	+	1	NA	NA	NA	-34	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.125000	0.771144	
mm_108189.1	chr12	76676199	76676399	+	1	NA	NA	NA	34248	NM_013675	20741	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0.010000	0.482587	
mm_148118.1	chr18	75187255	75187455	-	1	NA	NA	NA	109962	NR_045394	100503117	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.030000	0.547264	-84(CCTCTTATGGGC,+,0.00)
mm_111951.1	chr12	109460270	109460470	-	1	NA	NA	NA	6915	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.040000	0.577114	
mm_24501.1	chr3	92418027	92418227	+	1	NA	NA	NA	40	NR_003185	20764	Mm.57084	NR_003185	ENSMUSG00000027925	Sprr2j-ps	Sprr2j	small proline-rich protein 2J, pseudogene	pseudo	0.010000	0.398010	-28(TTCTATAAAGAG,-,0.00)
mm_122440.1	chr14	45220651	45220851	-	1	NA	NA	NA	1034	NM_027518	70713	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	0.050000	0.577114	
mm_149820.1	chr19	24223945	24224145	+	1	NA	NA	NA	981	NM_011597	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.030000	0.547264	-8(ACTTTTAGAGGC,+,0.00)
mm_53428.1	chr6	134042170	134042370	+	1	NA	NA	NA	6570	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.030000	0.532338	-34(TCCCATTAAAAG,-,0.00),-32(CCATTAAAAGTG,+,0.00)
mm_86126.1	chr9	116175186	116175386	-	1	NA	NA	NA	77	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.120000	0.711443	
mm_73171.1	chr8	95020783	95020983	+	1	NA	NA	NA	3191	NM_173036	54672	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.030000	0.631841	
mm_171400.1	chr4	123513875	123514075	-	1	NA	NA	NA	-102064	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.015000	0.422886	
mm_79392.1	chr9	54863672	54863872	+	1	NA	NA	NA	17	NM_022655	64602	Mm.208991	NM_022655	ENSMUSG00000032293	Ireb2	D9Ertd85e|Irp2	iron responsive element binding protein 2	protein-coding	0.100000	0.696517	
mm_78089.1	chr9	18292141	18292341	+	1	NA	NA	NA	-26	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.080000	0.592040	
mm_119157.1	chr14	31618907	31619107	+	1	NA	NA	NA	21958	NM_019975	56794	Mm.38887	NM_019975	ENSMUSG00000021884	Hacl1	1600020H07Rik|Hpcl|Phyh2	2-hydroxyacyl-CoA lyase 1	protein-coding	0.025000	0.437811	56(TGTTCTAAAAGC,-,0.00)
mm_119163.1	chr14	31929529	31929729	+	1	NA	NA	NA	-99214	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.035000	0.557214	
mm_38016.1	chr4	133754130	133754330	-	1	NA	NA	NA	-619	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.125000	0.756219	
mm_58704.1	chr7	12949670	12949870	+	1	NA	NA	NA	-16094	NM_178732	243834	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	0.035000	0.552239	-65(GCATTTATGGGT,+,0.00)
mm_40921.1	chr5	75830363	75830563	+	1	NA	NA	NA	147965	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.010000	0.522388	
mm_60637.1	chr7	44828385	44828585	+	1	NA	NA	NA	-7803	NM_010215	14204	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	0.015000	0.557214	
mm_127756.1	chr15	103503090	103503290	+	1	NA	NA	NA	156	NM_008800	18574	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.125000	0.781095	
mm_61267.1	chr7	66172809	66173009	+	1	NA	NA	NA	63394	NM_001081163	269941	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.000000	0.388060	
mm_68560.1	chr7	114634049	114634249	-	1	NA	NA	NA	2208	NM_001289444	12310	Mm.4361	NM_007587	ENSMUSG00000030669	Calca	CA|CGRP-1|CGRP1|Calc|Calc1|Cgrp|Ct|Ctn	calcitonin/calcitonin-related polypeptide, alpha	protein-coding	0.005000	0.522388	
mm_17722.1	chr2	32393057	32393257	-	1	NA	NA	NA	-2733	NM_133783	96979	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	0.010000	0.497512	
mm_147963.1	chr18	67134022	67134222	-	1	NA	NA	NA	562	NM_010307	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.060000	0.597015	
mm_1761.1	chr1	75546185	75546385	+	1	NA	NA	NA	19	NM_009208	20536	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	0.060000	0.691542	
mm_2214.1	chr1	89767637	89767837	+	1	NA	NA	NA	-83845	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.010000	0.343284	
mm_108217.1	chr12	77060147	77060347	+	1	NA	NA	NA	-97999	NM_001146176	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.030000	0.542289	81(CCGCATAAAGGC,-,0.00)
mm_107384.1	chr12	33147663	33147863	+	1	NA	NA	NA	77	NM_028139	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.095000	0.616915	
mm_152533.1	chr19	11326821	11327021	-	1	NA	NA	NA	7774	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.000000	0.432836	
mm_91367.1	chr10	29361249	29361449	-	1	NA	NA	NA	1093	NM_026518	68031	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	0.020000	0.407960	-6(TTTTTTAAAGAG,+,0.00)
mm_99899.1	chr11	109650864	109651064	+	1	NA	NA	NA	43	NM_001313976	19084	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.130000	0.711443	
mm_142570.1	chr17	46678471	46678671	-	1	NA	NA	NA	-1882	NM_001277310	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.025000	0.611940	
mm_117711.1	chr13	95222993	95223193	-	1	NA	NA	NA	-43	NM_001170669	218461	Mm.100167	NM_172263	ENSMUSG00000021684	Pde8b	B230331L10Rik|C030047E14Rik	phosphodiesterase 8B	protein-coding	0.160000	0.805970	
mm_26701.1	chr3	157566819	157567019	+	1	NA	NA	NA	27	NM_011196	19218	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0.120000	0.756219	
mm_7986.1	chr1	134234758	134234958	-	1	NA	NA	NA	-2	NM_001291928	11539	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri	adenosine A1 receptor	protein-coding	0.100000	0.671642	-84(CCTCTTTAAAGG,-,0.00),-83(CTCTTTAAAGGC,+,0.00),-83(CTCTTTAAAGGC,-,0.00),-82(TCTTTAAAGGCG,+,0.00)
mm_166307.1	chr5	105800520	105800720	+	1	NA	NA	NA	-75948	NR_030777	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.030000	0.497512	-23(CCTCATATAGCA,+,0.00)
mm_89140.1	chr10	85829335	85829535	+	1	NA	NA	NA	-42396	NM_133993	103136	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	0.100000	0.656716	
mm_9552.1	chr1	173928970	173929170	-	1	NA	NA	NA	13422	NM_001302649	15950	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Mndal	interferon activated gene 203	protein-coding	0.015000	0.472637	
mm_128543.1	chr15	55023051	55023251	-	1	NA	NA	NA	49001	NM_001081288	319944	Mm.380957	NM_001081288	ENSMUSG00000037343	Taf2	150kDa|4732460C16Rik|AI425886|CIF150|TAF2B|TAFII-150|TAFII150	TATA-box binding protein associated factor 2	protein-coding	0.015000	0.318408	
mm_14790.1	chr2	145860614	145860814	+	1	NA	NA	NA	-42527	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.070000	0.651741	
mm_34645.1	chr4	150748250	150748450	+	1	NA	NA	NA	-96176	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.005000	0.522388	
mm_29965.1	chr3	133464904	133465104	-	1	NA	NA	NA	79386	NM_001346736	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.005000	0.348259	
mm_157204.1	chrX	12673462	12673662	-	1	NA	NA	NA	77	NM_175141	69155	Mm.15974	NM_175141	ENSMUSG00000044148	1810030O07Rik	-	RIKEN cDNA 1810030O07 gene	protein-coding	0.080000	0.621891	
mm_158023.1	chrX	96165352	96165552	-	1	NA	NA	NA	69407	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.015000	0.432836	
mm_17825.1	chr2	33887375	33887575	-	1	NA	NA	NA	471	NM_175184	72543	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.175000	0.845771	
mm_5158.1	chr1	9991843	9992043	-	1	NA	NA	NA	17193	NR_110971	69312	Mm.386795	NM_027033	ENSMUSG00000025916	Ppp1r42	1700011J18Rik|4930418G15Rik|Lrrc67|TLRR	protein phosphatase 1, regulatory subunit 42	protein-coding	0.000000	0.517413	
mm_116147.1	chr13	29946945	29947145	-	1	NA	NA	NA	37346	NM_001289920	13557	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.010000	0.383085	
mm_144421.1	chr18	20971557	20971757	+	1	NA	NA	NA	27032	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.000000	0.457711	
mm_12282.1	chr2	69008328	69008528	+	1	NA	NA	NA	-127372	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.000000	0.388060	
mm_34283.1	chr4	141424599	141424799	+	1	NA	NA	NA	3920	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.030000	0.582090	
mm_40512.1	chr5	57788906	57789106	+	1	NA	NA	NA	70925	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.000000	0.482587	
mm_115871.1	chr13	21530994	21531194	-	1	NA	NA	NA	20	NM_139141	93681	Mm.290601	NM_139141	ENSMUSG00000063894	Zkscan8	2510038J07Rik|D430019P06Rik|LD5-1|Zfp192	zinc finger with KRAB and SCAN domains 8	protein-coding	0.085000	0.646766	
mm_59837.1	chr7	29317192	29317392	+	1	NA	NA	NA	13287	NM_013874	29861	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.010000	0.557214	
mm_126377.1	chr15	80171804	80172004	+	1	NA	NA	NA	-1817	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.020000	0.572139	
mm_125830.1	chr15	74957474	74957674	+	1	NA	NA	NA	2468	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.015000	0.497512	
mm_165450.1	chr2	156755249	156755449	+	1	NA	NA	NA	-20115	NM_172118	98932	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0.005000	0.353234	
mm_75810.1	chr8	70302388	70302588	-	1	NA	NA	NA	-36	NM_001024922	234374	Mm.388127	NM_001024922	ENSMUSG00000057788	Ddx49	R27090_2	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	protein-coding	0.090000	0.601990	
mm_7713.1	chr1	130629469	130629669	-	1	NA	NA	NA	37	NM_009581	22789	Mm.4644	NM_009581	ENSMUSG00000042554	Zp3r	AV264399|SP56	zona pellucida 3 receptor	protein-coding	0.010000	0.437811	
mm_87172.1	chr10	38965097	38965297	+	1	NA	NA	NA	-318	NM_010681	16775	Mm.258065	NM_010681	ENSMUSG00000019846	Lama4	-	laminin, alpha 4	protein-coding	0.010000	0.567164	-32(CCCTAGAAAAGG,-,0.00)
mm_123744.1	chr14	70191474	70191674	-	1	NA	NA	NA	672	NM_001271409	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.015000	0.577114	
mm_143325.1	chr17	66378801	66379001	-	1	NA	NA	NA	70849	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.030000	0.323383	
mm_164735.1	chr17	68314475	68314675	+	1	NA	NA	NA	40778	NM_177278	320858	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	l(3)mbt-like 4 (Drosophila)	protein-coding	0.025000	0.517413	
mm_115988.1	chr13	24329036	24329236	-	1	NA	NA	NA	1732	NM_001111110	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.025000	0.507463	72(GGACCTAAAAGG,-,0.00)
mm_169656.1	chr15	56908068	56908268	-	1	NA	NA	NA	-213622	NM_008216	15117	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding	0.050000	0.626866	
mm_2650.1	chr1	125676752	125676952	+	1	NA	NA	NA	-144	NM_027677	71111	Mm.32727	NM_027677	ENSMUSG00000026343	Gpr39	4933415E13Rik	G protein-coupled receptor 39	protein-coding	0.020000	0.572139	
mm_54132.1	chr6	21013077	21013277	-	1	NA	NA	NA	-202932	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.010000	0.402985	-85(GCCTTTTAAAAG,-,0.00),-84(CCTTTTAAAAGG,+,0.00),-84(CCTTTTAAAAGG,-,0.00),-83(CTTTTAAAAGGA,+,0.00)
mm_49854.1	chr6	38433839	38434039	+	1	NA	NA	NA	14	NM_177185	320538	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	0.100000	0.636816	
mm_17064.1	chr2	22590167	22590367	-	1	NA	NA	NA	-32060	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.005000	0.328358	77(TCTTTTATACTC,+,0.00)
mm_132936.1	chr16	49855651	49855851	+	1	NA	NA	NA	97	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.110000	0.746269	
mm_59353.1	chr7	25659356	25659556	+	1	NA	NA	NA	303	NR_104358	27998	Mm.27853	NM_138586	ENSMUSG00000061286	Exosc5	D7Wsu180e	exosome component 5	protein-coding	0.055000	0.497512	
mm_150852.1	chr19	44992344	44992544	+	1	NA	NA	NA	3100	NM_011976	26456	Mm.34404	NM_011976	ENSMUSG00000025207	Sema4g	AI507908|AW554132	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	protein-coding	0.010000	0.597015	
mm_69399.1	chr7	132311519	132311719	-	1	NA	NA	NA	-4045	NR_028578	100043682	Mm.482794	NR_028578	ENSMUSG00000109270	Gm10584	ENSMUSG00000073814	predicted gene 10584	ncRNA	0.010000	0.497512	
mm_150025.1	chr19	29373497	29373697	+	1	NA	NA	NA	6159	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.035000	0.497512	
mm_100293.1	chr11	117825806	117826006	+	1	NA	NA	NA	-13	NM_027827	71562	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	0.075000	0.577114	
mm_93579.1	chr10	116913787	116913987	-	1	NA	NA	NA	-17008	NM_001033333	237558	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	0.015000	0.462687	
mm_37877.1	chr4	132398111	132398311	-	1	NA	NA	NA	24235	NM_001161797	100169	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0.035000	0.562189	
mm_50339.1	chr6	48537491	48537691	+	1	NA	NA	NA	22	NM_133764	76252	Mm.30214	NM_133764	ENSMUSG00000039347	Atp6v0e2	0610006O14Rik|NM9.2	ATPase, H+ transporting, lysosomal V0 subunit E2	protein-coding	0.090000	0.597015	
mm_65403.1	chr7	25219752	25219952	-	1	NA	NA	NA	7	NM_207677	67379	Mm.280594	NM_026117	ENSMUSG00000054499	Dedd2	2410050E11Rik|FLAME-3	death effector domain-containing DNA binding protein 2	protein-coding	0.080000	0.577114	
mm_21227.1	chr2	155945154	155945354	-	1	NA	NA	NA	113	NM_008109	14563	Mm.4744	NM_008109	ENSMUSG00000038259	Gdf5	BMP-14|Cdmp-1|bp|brp	growth differentiation factor 5	protein-coding	0.055000	0.582090	
mm_63841.1	chr7	135650295	135650495	+	1	NA	NA	NA	-1504	NM_001316681	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.020000	0.547264	
mm_69114.1	chr7	127025455	127025655	-	1	NA	NA	NA	924	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.100000	0.691542	
mm_159004.1	chr1	156399890	156400090	-	1	NA	NA	NA	0	NM_001198597	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.000000	0.378109	
mm_153297.1	chr19	37697606	37697806	-	1	NA	NA	NA	-102	NM_007811	13082	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0.070000	0.587065	
mm_39529.1	chr5	21279525	21279725	+	1	NA	NA	NA	-93048	NM_008013	14190	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.015000	0.417910	
mm_34867.1	chr4	155557932	155558132	+	1	NA	NA	NA	-4360	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.010000	0.333333	
mm_66242.1	chr7	35555108	35555308	-	1	NA	NA	NA	720	NM_033080	110959	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	0.110000	0.691542	
mm_4821.1	chr1	185454688	185454888	+	1	NA	NA	NA	-60	NM_001033286	226781	Mm.227117	NM_001033286	ENSMUSG00000026614	Slc30a10	E130106K10Rik|Gm212	solute carrier family 30, member 10	protein-coding	0.030000	0.631841	
mm_69073.1	chr7	126975746	126975946	-	1	NA	NA	NA	-68	NM_026638	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.025000	0.512438	21(GTCTTTATAGCA,+,0.00)
mm_160657.1	chr9	118711583	118711783	+	1	NA	NA	NA	-9	NM_001113514	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.020000	0.527363	
mm_57192.1	chr6	122849819	122850019	-	1	NA	NA	NA	6238	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.010000	0.442786	-15(GTCTATAAAGGG,+,0.00),-15(GTCTATAAAGGG,-,0.00)
mm_109677.1	chr12	113098133	113098333	+	1	NA	NA	NA	-45	NM_001346696	116870	Mm.212577	NM_054081	ENSMUSG00000021144	Mta1	-	metastasis associated 1	protein-coding	0.210000	0.855721	75(CCCTTTAAACCG,+,0.00)
mm_166764.1	chr6	133105726	133105926	+	1	NA	NA	NA	587	NR_073368	381820	Mm.291762	NM_001163445	ENSMUSG00000072704	Smim10l1	2700089E24Rik|AI662692	small integral membrane protein 10 like 1	protein-coding	0.010000	0.492537	
mm_162433.1	chr1	98349794	98349994	+	1	NA	NA	NA	-71230	NM_001164233	70866	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding	0.000000	0.348259	-84(GCTTATATAAAG,+,0.00),-84(GCTTATATAAAG,-,0.00)
mm_126028.1	chr15	76701450	76701650	+	1	NA	NA	NA	8	NM_027122	69572	Mm.34920	NM_027122	ENSMUSG00000019080	Mfsd3	2310010G13Rik	major facilitator superfamily domain containing 3	protein-coding	0.065000	0.582090	
mm_1604.1	chr1	74381632	74381832	+	1	NA	NA	NA	6529	NM_013612	18173	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.030000	0.517413	
mm_78650.1	chr9	40333358	40333558	+	1	NA	NA	NA	-14	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.050000	0.587065	
mm_168196.1	chr10	65389365	65389565	-	1	NA	NA	NA	734599	NR_038039	69433	Mm.23366	NR_038039	ENSMUSG00000100000	1700023F02Rik	AV205046	RIKEN cDNA 1700023F02 gene	ncRNA	0.060000	0.656716	
mm_170937.1	chr2	47669455	47669655	-	1	NA	NA	NA	-1144554	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.070000	0.691542	
mm_131962.1	chr16	24594682	24594882	+	1	NA	NA	NA	65468	NR_038091	624582	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.015000	0.517413	
mm_141071.1	chr17	25833284	25833484	-	1	NA	NA	NA	-23	NM_019719	56424	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	0.070000	0.601990	15(CCATTAATGGCC,+,0.00)
mm_78102.1	chr9	19622180	19622380	+	1	NA	NA	NA	189	NM_172918	244713	Mm.67366	NM_172918	ENSMUSG00000057551	Zfp317	4932416G03|D230022C05Rik|KRAB9|Zfp67|Zfp75|mszf40	zinc finger protein 317	protein-coding	0.070000	0.592040	
mm_78441.1	chr9	32115919	32116119	+	1	NA	NA	NA	-117	NM_001195632	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.005000	0.552239	
mm_127792.1	chr15	3582551	3582751	-	1	NA	NA	NA	701	NM_001048178	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.040000	0.562189	
mm_81120.1	chr9	106461790	106461990	+	1	NA	NA	NA	4050	NM_001159652	436090	Mm.482905	NM_001159652	ENSMUSG00000091735	Gpr62	4933402E03Rik	G protein-coupled receptor 62	protein-coding	0.015000	0.582090	
mm_32468.1	chr4	107706959	107707159	+	1	NA	NA	NA	-22897	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.010000	0.542289	
mm_126164.1	chr15	78493756	78493956	+	1	NA	NA	NA	1210	NM_008368	16185	Mm.35287	NM_008368	ENSMUSG00000068227	Il2rb	CD122|IL-15Rbeta|IL15Rbeta|Il-2/15Rbeta|Il-2Rbeta|p70	interleukin 2 receptor, beta chain	protein-coding	0.015000	0.557214	
mm_105146.1	chr11	101460414	101460614	-	1	NA	NA	NA	5685	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.040000	0.611940	
mm_64971.1	chr7	16657398	16657598	-	1	NA	NA	NA	-20	NR_003247	100038912	Mm.389813	NR_003247	ENSMUSG00000108307	Ceacam-ps1	Gm1978	carcinoembryonic antigen-related cell adhesion molecule pseudogene 1	pseudo	0.005000	0.547264	
mm_165545.1	chr3	5860611	5860811	-	1	NA	NA	NA	-284463	NM_001163305	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.105000	0.686567	
mm_106743.1	chr12	3907656	3907856	+	1	NA	NA	NA	16012	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.050000	0.457711	
mm_113021.1	chr13	22006496	22006696	+	1	NA	NA	NA	3145	NM_019429	54373	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0.010000	0.557214	
mm_89712.1	chr10	98667903	98668103	+	1	NA	NA	NA	-247149	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.005000	0.402985	-35(TGCTATAAAAGC,-,0.00),-20(GGGTTTAAAAAC,-,0.00)
mm_162377.1	chr1	70543094	70543294	+	1	NA	NA	NA	-182521	NM_177164	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding	0.000000	0.388060	
mm_104220.1	chr11	88394574	88394774	-	1	NA	NA	NA	41901	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	0.040000	0.482587	
mm_88606.1	chr10	79814505	79814705	+	1	NA	NA	NA	-6416	NM_030218	78906	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.000000	0.487562	
mm_101243.1	chr11	20712193	20712393	-	1	NA	NA	NA	29263	NM_001290545	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.025000	0.462687	
mm_23545.1	chr3	61364700	61364900	+	1	NA	NA	NA	293	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.105000	0.741294	
mm_86928.1	chr10	24149452	24149652	+	1	NA	NA	NA	235	NM_016797	53331	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.115000	0.716418	
mm_14025.1	chr2	122150998	122151198	+	1	NA	NA	NA	3411	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.020000	0.482587	
mm_145754.1	chr18	64852055	64852255	+	1	NA	NA	NA	-35601	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.005000	0.477612	
mm_14594.1	chr2	136058072	136058272	+	1	NA	NA	NA	245	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.065000	0.631841	
mm_83678.1	chr9	50430188	50430388	-	1	NA	NA	NA	-64237	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.015000	0.557214	16(CCCTTAATACCA,+,0.00)
mm_73401.1	chr8	105860549	105860749	+	1	NA	NA	NA	-11	NR_033574	100043462	Mm.269188	NR_033574	ENSMUSG00000071497	Nutf2-ps1	ENSMUSG00000071497|Gm10333|Ntf2|Nutf2	nuclear transport factor 2, pseudogene 1	pseudo	0.095000	0.681592	
mm_34715.1	chr4	152124984	152125184	+	1	NA	NA	NA	3841	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.045000	0.572139	
mm_122897.1	chr14	54950072	54950272	-	1	NA	NA	NA	-1030	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.030000	0.597015	
mm_93199.1	chr10	94479488	94479688	-	1	NA	NA	NA	-35269	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.015000	0.532338	
mm_130836.1	chr15	101848994	101849194	-	1	NA	NA	NA	1692	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.020000	0.502488	
mm_155561.1	chrX	75416596	75416796	+	1	NA	NA	NA	68	NM_001166459	210766	Mm.226957	NM_145956	ENSMUSG00000031201	Brcc3	C6.1A	BRCA1/BRCA2-containing complex, subunit 3	protein-coding	0.080000	0.621891	
mm_105906.1	chr11	114983049	114983249	-	1	NA	NA	NA	6737	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.005000	0.462687	
mm_1053.1	chr1	58831509	58831709	+	1	NA	NA	NA	29107	NM_001080126	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.035000	0.472637	
mm_36658.1	chr4	94945868	94946068	-	1	NA	NA	NA	-17125	NM_001290623	67753	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	0.005000	0.388060	
mm_164996.1	chr19	18063777	18063977	+	1	NA	NA	NA	-226245	NM_001190483	18552	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding	0.020000	0.522388	
mm_165451.1	chr2	157201586	157201786	-	1	NA	NA	NA	2848	NM_011249	19650	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	retinoblastoma-like 1 (p107)	protein-coding	0.000000	0.497512	
mm_57117.1	chr6	122596514	122596714	-	1	NA	NA	NA	5830	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.015000	0.462687	
mm_117304.1	chr13	67360475	67360675	-	1	NA	NA	NA	-3	NM_001038651	629016	Mm.440800	NM_001038651	ENSMUSG00000098905	Zfp953	E130120F12Rik	zinc finger protein 953	protein-coding	0.040000	0.482587	
mm_123524.1	chr14	66749935	66750135	-	1	NA	NA	NA	114784	NM_001271760	11549	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	0.025000	0.537313	
mm_91379.1	chr10	30618268	30618468	-	1	NA	NA	NA	-2	NM_025798	66847	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	0.100000	0.676617	
mm_81000.1	chr9	103426451	103426651	+	1	NA	NA	NA	2973	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.020000	0.577114	
mm_4563.1	chr1	177447264	177447464	+	1	NA	NA	NA	1543	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.025000	0.472637	
mm_62085.1	chr7	92982003	92982203	+	1	NA	NA	NA	-97776	NM_021427	58238	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.010000	0.472637	
mm_66857.1	chr7	52918627	52918827	-	1	NA	NA	NA	-903011	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	0.000000	0.388060	
mm_14714.1	chr2	143912429	143912629	+	1	NA	NA	NA	-2802	NM_019771	56431	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.010000	0.437811	-33(GTATTTAAAAAG,-,0.00)
mm_40705.1	chr5	65861263	65861463	+	1	NA	NA	NA	-2206	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.015000	0.547264	
mm_95804.1	chr11	55109717	55109917	+	1	NA	NA	NA	11832	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.010000	0.427861	
mm_85862.1	chr9	110750011	110750211	-	1	NA	NA	NA	-2966	NM_011199	19228	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.010000	0.502488	-40(TGCCTTAAAGGC,-,0.00)
mm_158222.1	chrX	106011692	106011892	-	1	NA	NA	NA	107	NM_001190409	67075	Mm.275943	NM_025952	ENSMUSG00000031232	Magt1	2410001C15Rik|2610529C04Rik|2810482I07Rik|IAG2|IAP	magnesium transporter 1	protein-coding	0.095000	0.651741	
mm_155030.1	chrX	42068243	42068443	+	1	NA	NA	NA	-55	NM_001301639	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.070000	0.636816	
mm_86495.1	chr10	5639118	5639318	+	1	NA	NA	NA	0	NM_011702	22353	Mm.98916	NM_011702	ENSMUSG00000019772	Vip	-	vasoactive intestinal polypeptide	protein-coding	0.025000	0.547264	-33(CCCTATAAAATG,-,0.00)
mm_145224.1	chr18	50057147	50057347	+	1	NA	NA	NA	3965	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.000000	0.378109	-100(CCTTTTAAAAGA,+,0.00),-100(CCTTTTAAAAGA,-,0.00),-99(CTTTTAAAAGAA,+,0.00)
mm_134114.1	chr16	10280139	10280339	-	1	NA	NA	NA	33729	NM_007929	13731	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	0.015000	0.442786	
mm_94701.1	chr11	20224908	20225108	+	1	NA	NA	NA	23406	NM_008996	19324	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0.010000	0.353234	
mm_103674.1	chr11	79239806	79240006	-	1	NA	NA	NA	3118	NM_001042565	78889	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.005000	0.348259	-80(GCTTTAATAGAG,+,0.00)
mm_42306.1	chr5	114785654	114785854	+	1	NA	NA	NA	10614	NM_026718	68420	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	0.045000	0.577114	
mm_152888.1	chr19	24749620	24749820	-	1	NA	NA	NA	75712	NM_183160	226040	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	0.005000	0.422886	
mm_45474.1	chr5	69542529	69542729	-	1	NA	NA	NA	18	NM_023784	75581	Mm.154776	NM_023784	ENSMUSG00000029158	Yipf7	2310016N21Rik|Yip1b	Yip1 domain family, member 7	protein-coding	0.015000	0.432836	
mm_119327.1	chr14	38380360	38380560	+	1	NA	NA	NA	-517842	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA	0.030000	0.427861	-47(GACTATATATGA,-,0.00)
mm_137379.1	chr17	25727662	25727862	+	1	NA	NA	NA	11	NM_028009	106707	Mm.24603	NM_028009	ENSMUSG00000041199	Rpusd1	2310051D06Rik|AU019540|Rlucl	RNA pseudouridylate synthase domain containing 1	protein-coding	0.035000	0.582090	
mm_74445.1	chr8	4087309	4087509	-	1	NA	NA	NA	18355	NM_026956	69142	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	0.055000	0.621891	
mm_155141.1	chrX	51792001	51792201	+	1	NA	NA	NA	9132	NM_031388	83563	Mm.242827	NM_031388	ENSMUSG00000055780	Usp26	-	ubiquitin specific peptidase 26	protein-coding	0.000000	0.432836	
mm_80422.1	chr9	77917153	77917353	+	1	NA	NA	NA	-112	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.055000	0.542289	
mm_39548.1	chr5	21645945	21646145	+	1	NA	NA	NA	61	NM_026034	67211	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	0.060000	0.681592	
mm_114990.1	chr13	97511066	97511266	+	1	NA	NA	NA	28465	NR_110431	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.015000	0.477612	
mm_16605.1	chr2	5063964	5064164	-	1	NA	NA	NA	-126	NM_181848	71648	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0.130000	0.736318	
mm_70997.1	chr8	28593431	28593631	+	1	NA	NA	NA	-508678	NR_033590	666422	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	0.010000	0.422886	-32(GAATATAAATGG,-,0.00)
mm_122800.1	chr14	54554174	54554374	-	1	NA	NA	NA	87	NM_145462	219072	Mm.202152	NM_145462	ENSMUSG00000022177	Haus4	9430093H08Rik|AU016300|D14Ertd500e	HAUS augmin-like complex, subunit 4	protein-coding	0.135000	0.711443	
mm_58714.1	chr7	12999026	12999226	+	1	NA	NA	NA	-934	NM_009512	26459	Mm.10984	NM_009512	ENSMUSG00000030382	Slc27a5	FACVL3|FATP5|VLCS-H2|VLCSH2|Vlacsr	solute carrier family 27 (fatty acid transporter), member 5	protein-coding	0.010000	0.437811	
mm_156674.1	chrX	159255823	159256023	+	1	NA	NA	NA	141	NM_001346675	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	0.140000	0.746269	
mm_69612.1	chr7	137199143	137199343	-	1	NA	NA	NA	-35440	NR_045885	100038555	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	ENSMUSG00000073800	predicted gene 10578	ncRNA	0.040000	0.532338	
mm_111314.1	chr12	85824431	85824631	-	1	NA	NA	NA	14	NM_021446	58520	Mm.143795	NM_021446	ENSMUSG00000021252	0610007P14Rik	1190004E09Rik|AU019315|C77855|ORF11	RIKEN cDNA 0610007P14 gene	protein-coding	0.030000	0.567164	
mm_149728.1	chr19	21793154	21793354	+	1	NA	NA	NA	14914	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.000000	0.412935	
mm_153913.1	chr19	47171101	47171301	-	1	NA	NA	NA	-7619	NM_021360	18011	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.020000	0.447761	
mm_76104.1	chr8	80395032	80395232	-	1	NA	NA	NA	-98913	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.020000	0.447761	
mm_1020.1	chr1	58745048	58745248	+	1	NA	NA	NA	14596	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.010000	0.462687	
mm_42930.1	chr5	122850073	122850273	+	1	NA	NA	NA	-15	NM_030564	80751	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	0.115000	0.676617	
mm_30831.1	chr4	21931229	21931429	+	1	NA	NA	NA	3	NM_175234	76132	Mm.159689	NM_175234	ENSMUSG00000028246	Faxc	6230409E13Rik|AW742931	failed axon connections homolog	protein-coding	0.110000	0.736318	
mm_13649.1	chr2	114054274	114054474	+	1	NA	NA	NA	-22	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.005000	0.567164	
mm_138024.1	chr17	33911892	33912092	+	1	NA	NA	NA	2391	NM_001199733	13163	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0.050000	0.616915	
mm_110993.1	chr12	77453122	77453322	-	1	NA	NA	NA	43081	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.025000	0.472637	-24(TGCTATAAAAAC,-,0.00)
mm_137304.1	chr17	24850623	24850823	+	1	NA	NA	NA	56	NM_001159626	14651	Mm.43784	NM_024284	ENSMUSG00000024158	Hagh	BC019817|Glo-2|Glo2|Rsp29	hydroxyacyl glutathione hydrolase	protein-coding	0.120000	0.711443	
mm_67967.1	chr7	100607575	100607775	-	1	NA	NA	NA	89	NM_001163663	19346	Mm.28650	NM_024287	ENSMUSG00000030704	Rab6a	2610028L11Rik|AA419671|Rab6	RAB6A, member RAS oncogene family	protein-coding	0.145000	0.716418	
mm_50358.1	chr6	48647161	48647361	+	1	NA	NA	NA	27	NM_001077410	243374	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	0.010000	0.537313	
mm_106155.1	chr11	116624118	116624318	-	1	NA	NA	NA	34	NM_001167680	217344	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.115000	0.756219	
mm_6364.1	chr1	72212214	72212414	-	1	NA	NA	NA	-7	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.140000	0.721393	
mm_10398.1	chr2	13575071	13575271	+	1	NA	NA	NA	860	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.015000	0.497512	
mm_84035.1	chr9	57765521	57765721	-	1	NA	NA	NA	239	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.125000	0.681592	
mm_102005.1	chr11	51601706	51601906	-	1	NA	NA	NA	5075	NM_001048061	15384	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.055000	0.611940	
mm_169292.1	chr13	98977570	98977770	+	1	NA	NA	NA	6895	NM_027064	69382	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0.015000	0.512438	
mm_133581.1	chr16	91407042	91407242	+	1	NA	NA	NA	907	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.015000	0.542289	
mm_71039.1	chr8	33657893	33658093	+	1	NA	NA	NA	4755	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.025000	0.492537	
mm_61595.1	chr7	80025911	80026111	+	1	NA	NA	NA	-217	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.025000	0.432836	-72(CCTTTTAGAGAA,+,0.00)
mm_25733.1	chr3	122834690	122834890	+	1	NA	NA	NA	-32810	NR_045168	71647	Mm.449992	NR_045168	ENSMUSG00000106583	4930447N08Rik	-	RIKEN cDNA 4930447N08 gene	ncRNA	0.005000	0.502488	
mm_173019.1	chrX	101429621	101429821	+	1	NA	NA	NA	70	NM_001252518	53610	Mm.280069	NM_023144	ENSMUSG00000031311	Nono	AA407051|AV149256|NRB54|P54NRB|nonA	non-POU-domain-containing, octamer binding protein	protein-coding	0.090000	0.636816	
mm_167460.1	chr8	123427377	123427577	-	1	NA	NA	NA	-15479	NM_001253784	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.055000	0.601990	
mm_5619.1	chr1	39847228	39847428	-	1	NA	NA	NA	2	NR_040465	73426	Mm.396239	NR_040465	ENSMUSG00000101634	1700066B17Rik	-	RIKEN cDNA 1700066B17 gene	ncRNA	0.020000	0.512438	
mm_148868.1	chr19	6497370	6497570	+	1	NA	NA	NA	45600	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.115000	0.751244	
mm_36969.1	chr4	109476177	109476377	-	1	NA	NA	NA	228	NM_013876	29864	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0.105000	0.686567	
mm_66011.1	chr7	30588743	30588943	-	1	NA	NA	NA	-117	NM_029274	75410	Mm.168688	NM_029274	ENSMUSG00000006307	Kmt2b	2610014H22Rik|Mll2|Wbp7|mKIAA0304	lysine (K)-specific methyltransferase 2B	protein-coding	0.100000	0.786070	
mm_23483.1	chr3	60497810	60498010	+	1	NA	NA	NA	-3269	NM_001253711	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.308458	
mm_3437.1	chr1	150102038	150102238	+	1	NA	NA	NA	2107	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.462687	48(ACCTAGAAAAGG,-,0.00)
mm_93851.1	chr10	122047177	122047377	-	1	NA	NA	NA	38	NM_001242411	117600	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.075000	0.641791	
mm_107020.1	chr12	12765930	12766130	+	1	NA	NA	NA	-96113	NR_136889	102637952	Mm.421393	NR_136889		Gm34637	-	predicted gene, 34637	ncRNA	0.005000	0.502488	
mm_59402.1	chr7	26808795	26808995	+	1	NA	NA	NA	-32	NM_013809	13108	Mm.102312	NM_013809	ENSMUSG00000049685	Cyp2g1	-	cytochrome P450, family 2, subfamily g, polypeptide 1	protein-coding	0.000000	0.442786	
mm_85626.1	chr9	107615714	107615914	-	1	NA	NA	NA	-6573	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.045000	0.507463	
mm_113322.1	chr13	30786274	30786474	+	1	NA	NA	NA	37141	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.005000	0.587065	
mm_152404.1	chr19	10592438	10592638	-	1	NA	NA	NA	11720	NM_145496	225913	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	0.005000	0.542289	
mm_81862.1	chr9	118877039	118877239	+	1	NA	NA	NA	-49397	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.035000	0.547264	
mm_41109.1	chr5	87777119	87777319	+	1	NA	NA	NA	2769	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.000000	0.412935	
mm_53764.1	chr6	145808107	145808307	+	1	NA	NA	NA	-176	NM_027760	71323	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.035000	0.527363	
mm_2637.1	chr1	121495780	121495980	+	1	NA	NA	NA	32585	NM_010483	15564	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	0.005000	0.437811	
mm_130244.1	chr15	96639636	96639836	-	1	NA	NA	NA	2226	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.025000	0.502488	
mm_134925.1	chr16	30550477	30550677	-	1	NA	NA	NA	1	NM_172614	224090	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0.115000	0.746269	
mm_25515.1	chr3	113629751	113629951	+	1	NA	NA	NA	298	NM_026043	67225	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding	0.125000	0.711443	
mm_15872.1	chr2	164835087	164835287	+	1	NA	NA	NA	1414	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.030000	0.482587	-10(GCCCTTAAAGAC,-,0.00)
mm_95953.1	chr11	58393829	58394029	+	1	NA	NA	NA	13283	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.000000	0.378109	
mm_169364.1	chr14	32201755	32201955	-	1	NA	NA	NA	36	NM_016897	53600	Mm.303703	NM_016897	ENSMUSG00000013701	Timm23	Tim23	translocase of inner mitochondrial membrane 23	protein-coding	0.125000	0.686567	
mm_41798.1	chr5	103753628	103753828	+	1	NA	NA	NA	-434	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.065000	0.601990	
mm_28263.1	chr3	88622631	88622831	-	1	NA	NA	NA	1337	NM_001198912	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.025000	0.547264	
mm_77924.1	chr9	7352842	7353042	+	1	NA	NA	NA	5568	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.417910	
mm_86629.1	chr10	13975742	13975942	+	1	NA	NA	NA	9463	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.015000	0.417910	
mm_161167.1	chr13	35738194	35738394	+	1	NA	NA	NA	-3108	NM_001123386	12593	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.000000	0.502488	
mm_42818.1	chr5	121981533	121981733	+	1	NA	NA	NA	66192	NM_007804	13048	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2|ENSMUSG00000072641	cut-like homeobox 2	protein-coding	0.025000	0.527363	
mm_170279.1	chr18	27598974	27599174	+	1	NA	NA	NA	-961090	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.005000	0.388060	
mm_47507.1	chr5	124035711	124035911	-	1	NA	NA	NA	-3551	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.020000	0.452736	-77(CCTTTAAAACAA,+,0.00)
mm_122466.1	chr14	45529905	45530105	-	1	NA	NA	NA	60	NM_146054	218952	Mm.210018	NM_146054	ENSMUSG00000037712	Fermt2	AA960555|Kindlin-2|Mig2|Plekhc1	fermitin family member 2	protein-coding	0.150000	0.805970	
mm_148256.1	chr18	80742955	80743155	-	1	NA	NA	NA	-29984	NM_001164109	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.010000	0.447761	
mm_50474.1	chr6	48987873	48988073	+	1	NA	NA	NA	1112	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.005000	0.537313	
mm_128267.1	chr15	36792318	36792518	-	1	NA	NA	NA	-1486	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.085000	0.601990	
mm_12148.1	chr2	61804886	61805086	+	1	NA	NA	NA	533	NM_009322	21375	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.045000	0.552239	
mm_171696.1	chr4	67941127	67941327	-	1	NA	NA	NA	1013170	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.040000	0.611940	
mm_139482.1	chr17	56040285	56040485	+	1	NA	NA	NA	-31	NM_013733	27221	Mm.391010	NM_013733	ENSMUSG00000002835	Chaf1a	AL023013|AL024058|CAF-1|Cac1p	chromatin assembly factor 1, subunit A (p150)	protein-coding	0.150000	0.726368	
mm_50772.1	chr6	53629690	53629890	+	1	NA	NA	NA	56416	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.000000	0.442786	
mm_51085.1	chr6	67020216	67020416	+	1	NA	NA	NA	-16283	NR_040278	320172	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0.020000	0.402985	
mm_172419.1	chr7	25569754	25569954	+	1	NA	NA	NA	-29850	NM_001113369	26367	Mm.439731	NM_007543	ENSMUSG00000054385	Ceacam2	AI267129|Bgp2|Ceacam2-L	carcinoembryonic antigen-related cell adhesion molecule 2	protein-coding	0.025000	0.497512	
mm_60759.1	chr7	45525431	45525631	+	1	NA	NA	NA	737	NM_008654	17872	Mm.4048	NM_008654	ENSMUSG00000040435	Ppp1r15a	9630030H21|Gadd34|Myd116	protein phosphatase 1, regulatory (inhibitor) subunit 15A	protein-coding	0.015000	0.482587	
mm_51591.1	chr6	83867038	83867238	+	1	NA	NA	NA	-35397	NM_146169	232164	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	0.095000	0.681592	
mm_168419.1	chr11	33160008	33160208	-	1	NA	NA	NA	3098	NM_001252261	18148	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	0.010000	0.427861	
mm_3141.1	chr1	135142570	135142770	+	1	NA	NA	NA	-4164	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.005000	0.417910	
mm_1361.1	chr1	66364543	66364743	+	1	NA	NA	NA	42919	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.010000	0.432836	-46(ACCTCTTTAAGC,-,0.00),-44(CTCTTTAAGCCC,+,0.00)
mm_34766.1	chr4	153030939	153031139	+	1	NA	NA	NA	333499	NR_033138	330004	Mm.291863	NM_001033414		Gm833	-	predicted gene 833	ncRNA	0.005000	0.537313	
mm_71621.1	chr8	57332340	57332540	+	1	NA	NA	NA	5	NR_131041	75996	Mm.399754	NR_131041	ENSMUSG00000097910	5033428I22Rik	-	RIKEN cDNA 5033428I22 gene	ncRNA	0.035000	0.552239	
mm_90131.1	chr10	117717825	117718025	+	1	NA	NA	NA	-7167	NM_001288586	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.015000	0.462687	
mm_102491.1	chr11	60239634	60239834	-	1	NA	NA	NA	-19107	NM_001313979	20787	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP-1a|SREBP1|SREBP1c|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.005000	0.447761	
mm_29564.1	chr3	116861716	116861916	-	1	NA	NA	NA	136	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.055000	0.532338	
mm_141108.1	chr17	26021826	26022026	-	1	NA	NA	NA	-66	NM_153140	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.020000	0.522388	
mm_165952.1	chr4	86558296	86558496	+	1	NA	NA	NA	-48	NR_131920	74888		NR_131920	ENSMUSG00000085108	Saxo1os	4930457A20Rik|Fam154aos	stabilizer of axonemal microtubules 1, opposite strand	ncRNA	0.000000	0.532338	
mm_50661.1	chr6	51482897	51483097	+	1	NA	NA	NA	12381	NM_007624	12417	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	0.000000	0.283582	
mm_71549.1	chr8	48062020	48062220	+	1	NA	NA	NA	-36972	NM_001161516	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	0.020000	0.482587	
mm_128746.1	chr15	64382822	64383022	-	1	NA	NA	NA	-3	NM_010026	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.140000	0.746269	
mm_14723.1	chr2	144032965	144033165	+	1	NA	NA	NA	-37	NM_001044750	403171	Mm.389362	NM_207275	ENSMUSG00000037307	Banf2	4930517K23Rik|Baf-L|Baf-like|Gm115	barrier to autointegration factor 2	protein-coding	0.015000	0.522388	
mm_85072.1	chr9	91360907	91361107	-	1	NA	NA	NA	4792	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.040000	0.552239	
mm_160692.1	chr10	26229636	26229836	+	1	NA	NA	NA	29	NM_001115154	268288	Mm.213322	NM_001013766	ENSMUSG00000051354	Samd3	Gm623	sterile alpha motif domain containing 3	protein-coding	0.015000	0.472637	
mm_69412.1	chr7	132576219	132576419	-	1	NA	NA	NA	79	NM_016978	18242	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0.120000	0.646766	
mm_29624.1	chr3	121532155	121532355	-	1	NA	NA	NA	89	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.085000	0.691542	
mm_34470.1	chr4	148160522	148160722	+	1	NA	NA	NA	-46	NM_176848	230904	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0.090000	0.716418	-34(GGCCTTTAAGAG,-,0.00),-33(GCCTTTAAGAGG,-,0.00),-32(CCTTTAAGAGGC,+,0.00)
mm_90355.1	chr10	127165252	127165452	+	1	NA	NA	NA	196	NM_001244617	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.110000	0.696517	
mm_88214.1	chr10	70245012	70245212	+	1	NA	NA	NA	-164	NM_025807	66859	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.070000	0.686567	
mm_106085.1	chr11	116178075	116178275	-	1	NA	NA	NA	-9997	NM_172571	217335	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.055000	0.567164	
mm_24620.1	chr3	93511209	93511409	+	1	NA	NA	NA	-9187	NM_016740	20195	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0.000000	0.467662	
mm_86316.1	chr9	122865912	122866112	-	1	NA	NA	NA	-6	NM_173364	235682	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	0.060000	0.601990	
mm_124850.1	chr15	9525032	9525232	+	1	NA	NA	NA	4744	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.015000	0.432836	
mm_137513.1	chr17	27057268	27057468	+	1	NA	NA	NA	64	NM_080553	16440	Mm.458106	NM_080553	ENSMUSG00000042644	Itpr3	IP3R 3|Ip3r3|Itpr-3|tf	inositol 1,4,5-triphosphate receptor 3	protein-coding	0.115000	0.726368	
mm_167667.1	chr9	72985207	72985407	-	1	NA	NA	NA	69	NM_001198789	546143	Mm.260946	NM_001198789	ENSMUSG00000086158	Ccpg1os	EG546143|Gm5918	cell cycle progression 1, opposite strand	protein-coding	0.080000	0.597015	
mm_1863.1	chr1	85011982	85012182	+	1	NA	NA	NA	-76999	NM_027921	71781	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.020000	0.532338	
mm_100487.1	chr11	120361079	120361279	+	1	NA	NA	NA	-355	NM_172802	238021	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.010000	0.557214	
mm_25102.1	chr3	101286543	101286743	+	1	NA	NA	NA	1296	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.015000	0.512438	
mm_138638.1	chr17	35865978	35866178	+	1	NA	NA	NA	-50	NM_001146710	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.075000	0.691542	
mm_112932.1	chr13	20964449	20964649	+	1	NA	NA	NA	108750	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.000000	0.373134	-77(GCCCATTTAGGG,-,0.00)
mm_75666.1	chr8	66971850	66972050	-	1	NA	NA	NA	111733	NM_001163564	234344	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0.015000	0.447761	
mm_15313.1	chr2	155568016	155568216	+	1	NA	NA	NA	-11186	NR_040613	74945	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	0.000000	0.467662	
mm_18130.1	chr2	45004917	45005117	-	1	NA	NA	NA	18160	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.000000	0.388060	
mm_116553.1	chr13	46727476	46727676	-	1	NA	NA	NA	273	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.130000	0.771144	
mm_106426.1	chr11	119299979	119300179	-	1	NA	NA	NA	-36	NM_138669	192170	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	0.170000	0.701493	
mm_28411.1	chr3	90292771	90292971	-	1	NA	NA	NA	22722	NR_105979	102465612		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.060000	0.547264	57(GTCTCTTAAAAC,-,0.00)
mm_66312.1	chr7	39797667	39797867	-	1	NA	NA	NA	280001	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.005000	0.427861	-53(GCTTTTCTAGCT,+,0.00)
mm_132722.1	chr16	43610598	43610798	+	1	NA	NA	NA	-29957	NR_030576	100124467		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.030000	0.616915	
mm_165191.1	chr2	31965584	31965784	+	1	NA	NA	NA	-8766	NM_172268	227720	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	0.010000	0.502488	
mm_28442.1	chr3	90507961	90508161	-	1	NA	NA	NA	1437	NM_001293776	66511	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	0.000000	0.398010	
mm_160385.1	chr8	46169443	46169643	+	1	NA	NA	NA	-13	NM_025747	66756	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430|mKIAA1430	cilia and flagella associated protein 97	protein-coding	0.015000	0.353234	
mm_3808.1	chr1	158362323	158362523	+	1	NA	NA	NA	119	NM_001205204	11899	Mm.329586	NM_007495	ENSMUSG00000026587	Astn1	Astn|GC14|mKIAA0289	astrotactin 1	protein-coding	0.035000	0.636816	
mm_102616.1	chr11	62458271	62458471	-	1	NA	NA	NA	-89	NM_001039536	327942	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.090000	0.636816	
mm_106071.1	chr11	116168201	116168401	-	1	NA	NA	NA	-123	NM_172571	217335	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.085000	0.616915	
mm_138340.1	chr17	34903248	34903448	+	1	NA	NA	NA	4374	NM_145830	110147	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0.035000	0.611940	-35(CTTTTTCTAGTC,+,0.00)
mm_76650.1	chr8	93154350	93154550	-	1	NA	NA	NA	-23167	NM_007954	13884	Mm.88078	NM_007954	ENSMUSG00000057400	Ces1c	Ces-N|Ee-1|Ee1|Es-4|Es-N|Es1|Es4|EsN|PESN	carboxylesterase 1C	protein-coding	0.000000	0.482587	-35(TTCTATTTAAGC,-,0.00)
mm_143735.1	chr17	81471188	81471388	-	1	NA	NA	NA	267099	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.015000	0.437811	14(GAGTCTTAAAGG,-,0.00)
mm_73348.1	chr8	105427503	105427703	+	1	NA	NA	NA	-37	NM_001033371	270091	Mm.212709	NM_001033371	ENSMUSG00000054320	Lrrc36	BC036564	leucine rich repeat containing 36	protein-coding	0.005000	0.457711	
mm_132049.1	chr16	29210031	29210231	+	1	NA	NA	NA	436	NM_013751	27281	Mm.103650	NM_013751	ENSMUSG00000022525	Hrasls	2810012B06Rik|A-C1|HRSL1|Hrasrs	HRAS-like suppressor	protein-coding	0.090000	0.706468	
mm_48601.1	chr5	144223467	144223667	-	1	NA	NA	NA	11	NM_027410	70381	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	0.090000	0.626866	
mm_147305.1	chr18	39519508	39519708	-	1	NA	NA	NA	-32363	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.005000	0.442786	
mm_12064.1	chr2	59484554	59484754	+	1	NA	NA	NA	1	NM_029723	76747	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0.030000	0.567164	
mm_5747.1	chr1	45927904	45928104	-	1	NA	NA	NA	-2410	NM_016917	53945	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.005000	0.482587	
mm_28279.1	chr3	88950107	88950307	-	1	NA	NA	NA	75	NM_022994	65111	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0.125000	0.721393	
mm_18963.1	chr2	76807275	76807475	-	1	NA	NA	NA	132060	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.502488	
mm_36860.1	chr4	106865853	106866053	-	1	NA	NA	NA	-45517	NM_198438	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.020000	0.616915	
mm_125946.1	chr15	76248439	76248639	+	1	NA	NA	NA	348	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.025000	0.552239	
mm_136531.1	chr16	97504834	97505034	-	1	NA	NA	NA	2	NM_020622	52793	Mm.327932	NM_020622	ENSMUSG00000022938	Fam3b	2-21|9030624C24Rik|D16Jhu19e|ORF9|Pander	family with sequence similarity 3, member B	protein-coding	0.010000	0.537313	
mm_16910.1	chr2	13491940	13492140	-	1	NA	NA	NA	-164	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.010000	0.398010	
mm_39991.1	chr5	32491878	32492078	+	1	NA	NA	NA	33008	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.010000	0.398010	
mm_84247.1	chr9	62377241	62377441	-	1	NA	NA	NA	35998	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.015000	0.552239	-99(GGCCCTTAAAGC,-,0.00),-98(GCCCTTAAAGCC,+,0.00),-97(CCCTTAAAGCCC,+,0.00)
mm_101894.1	chr11	49087215	49087415	-	1	NA	NA	NA	298	NM_008330	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.015000	0.492537	
mm_143958.1	chr17	86987056	86987256	-	1	NA	NA	NA	24045	NM_145491	104215	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.040000	0.552239	
mm_17405.1	chr2	27246646	27246846	-	1	NA	NA	NA	557	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.005000	0.507463	
mm_41607.1	chr5	96374426	96374626	+	1	NA	NA	NA	571	NM_175473	231470	Mm.291120	NM_175473	ENSMUSG00000034687	Fras1	E130113P14Rik|bl|mKIAA1500	Fraser extracellular matrix complex subunit 1	protein-coding	0.060000	0.636816	
mm_124201.1	chr14	98169511	98169711	-	1	NA	NA	NA	154	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.080000	0.646766	
mm_22869.1	chr3	28893625	28893825	+	1	NA	NA	NA	1108	NM_001033479	385263	Mm.60893	NM_001033479	ENSMUSG00000074655	Gm1527	Gm1136	predicted gene 1527	protein-coding	0.005000	0.417910	
mm_80663.1	chr9	90067669	90067869	+	1	NA	NA	NA	13502	NM_001312649	13036	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.000000	0.407960	-100(CCTTTAAGGACC,+,0.00)
mm_68289.1	chr7	105640244	105640444	-	1	NA	NA	NA	72	NM_029802	76932	Mm.41637	NM_029802	ENSMUSG00000030881	Arfip2	2310002N04Rik|POR|Por1	ADP-ribosylation factor interacting protein 2	protein-coding	0.095000	0.656716	
mm_40208.1	chr5	37046990	37047190	+	1	NA	NA	NA	-3767	NM_178394	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0.015000	0.507463	
mm_106660.1	chr11	121229204	121229404	-	1	NA	NA	NA	5	NM_144832	217370	Mm.27182	NM_144832	ENSMUSG00000039294	BC017643	-	cDNA sequence BC017643	protein-coding	0.045000	0.587065	
mm_82002.1	chr9	121705012	121705212	+	1	NA	NA	NA	-83	NM_178677	215474	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.070000	0.621891	
mm_5659.1	chr1	42664981	42665181	-	1	NA	NA	NA	29744	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.010000	0.442786	
mm_119692.1	chr14	53553945	53554145	+	1	NA	NA	NA	699884	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.482587	
mm_143631.1	chr17	78934092	78934292	-	1	NA	NA	NA	2878	NM_001024806	12607	Mm.24169	NM_009882	ENSMUSG00000024081	Cebpz	AI848081|CBF2|Cbf|Cebpa-rs1	CCAAT/enhancer binding protein zeta	protein-coding	0.005000	0.412935	
mm_86380.1	chr9	123851710	123851910	-	1	NA	NA	NA	89	NM_001110253	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.110000	0.661692	
mm_43740.1	chr5	139908318	139908518	+	1	NA	NA	NA	475	NM_175522	243312	Mm.237102	NM_175522	ENSMUSG00000048988	Elfn1	A930017N06Rik|AI197272|Ppp1r28	leucine rich repeat and fibronectin type III, extracellular 1	protein-coding	0.195000	0.810945	
mm_64191.1	chr7	141461643	141461843	+	1	NA	NA	NA	649	NM_001025103	213573	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.070000	0.651741	
mm_3784.1	chr1	156735632	156735832	+	1	NA	NA	NA	-16822	NM_145413	215015	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	0.005000	0.457711	
mm_47544.1	chr5	124327789	124327989	-	1	NA	NA	NA	83	NM_001081323	269702	Mm.60224	NM_001081323	ENSMUSG00000038126	Mphosph9	4930548D04Rik|9630025B04Rik|AW413446|AW547060|B930097C17Rik|C87456|MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding	0.140000	0.686567	
mm_71369.1	chr8	45749192	45749392	+	1	NA	NA	NA	70005	NR_045739	319940	Mm.441720	NR_045739	ENSMUSG00000085440	Sorbs2os	D330022K07Rik	sorbin and SH3 domain containing 2, opposite strand	ncRNA	0.010000	0.447761	43(CCCTTGTAAAGG,-,0.00)
mm_78500.1	chr9	32737628	32737828	+	1	NA	NA	NA	41686	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.000000	0.313433	
mm_162614.1	chr1	183345312	183345512	-	1	NA	NA	NA	24153	NM_177389	338366	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	0.145000	0.696517	
mm_152610.1	chr19	11911976	11912176	-	1	NA	NA	NA	-323	NM_172635	225929	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	0.045000	0.537313	
mm_26650.1	chr3	154132224	154132424	+	1	NA	NA	NA	158888	NM_001081263	242259	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0.020000	0.432836	
mm_37768.1	chr4	129742151	129742351	-	1	NA	NA	NA	52	NM_011317	20218	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	0.150000	0.711443	
mm_772.1	chr1	44173255	44173455	+	1	NA	NA	NA	25611	NM_011729	22592	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	0.005000	0.427861	
mm_144210.1	chr18	9722434	9722634	+	1	NA	NA	NA	14886	NM_130449	140792	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.000000	0.338308	
mm_86738.1	chr10	19141652	19141852	+	1	NA	NA	NA	3	NR_038021	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.010000	0.422886	
mm_52163.1	chr6	98275368	98275568	+	1	NA	NA	NA	67286	NM_001128092	330390	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0.025000	0.482587	
mm_112115.1	chr12	112802556	112802756	-	1	NA	NA	NA	-6319	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.110000	0.741294	
mm_21968.1	chr2	167301383	167301583	-	1	NA	NA	NA	47695	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.045000	0.552239	88(TTGTATAAAAAC,-,0.00)
mm_77784.1	chr9	3025381	3025581	+	1	NA	NA	NA	13262	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.353234	
mm_104820.1	chr11	99000962	99001162	-	1	NA	NA	NA	-18046	NM_178596	353155	Mm.453253	NM_178596	ENSMUSG00000047197	Gjd3	Gja11|Gjc1|cx30.2	gap junction protein, delta 3	protein-coding	0.020000	0.492537	
mm_44386.1	chr5	17828821	17829021	-	1	NA	NA	NA	6975	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.025000	0.482587	
mm_2209.1	chr1	89603142	89603342	+	1	NA	NA	NA	80650	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.010000	0.373134	
mm_77772.1	chr9	3015186	3015386	+	1	NA	NA	NA	23457	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.010000	0.338308	
mm_61160.1	chr7	58755285	58755485	+	1	NA	NA	NA	97183	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.000000	0.457711	
mm_64412.1	chr7	142532949	142533149	+	1	NA	NA	NA	-68	NM_011288	19935	Mm.12144	NM_011288	ENSMUSG00000037772	Mrpl23	L23mrp|Rpl23|Rpl23l	mitochondrial ribosomal protein L23	protein-coding	0.115000	0.751244	
mm_124500.1	chr14	121879409	121879609	-	1	NA	NA	NA	-101	NR_130999	78312	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0.030000	0.477612	
mm_158725.1	chrX	163761204	163761404	-	1	NA	NA	NA	28	NM_028842	74264	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	0.050000	0.587065	
mm_34926.1	chr4	155813019	155813219	+	1	NA	NA	NA	630	NM_207678	56036	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	0.035000	0.537313	
mm_167161.1	chr7	135357665	135357865	+	1	NA	NA	NA	-52602	NM_183193	270004	Mm.132547	NM_183193	ENSMUSG00000048377	Foxi2	B130055A05Rik	forkhead box I2	protein-coding	0.015000	0.517413	-46(CCTTTTCTAGGT,+,0.00)
mm_170081.1	chr17	34546359	34546559	+	1	NA	NA	NA	-17836	NM_010929	18132	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	0.020000	0.527363	
mm_12540.1	chr2	72297769	72297969	+	1	NA	NA	NA	12168	NM_178084	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.025000	0.577114	
mm_160736.1	chr10	79550324	79550524	-	1	NA	NA	NA	4704	NM_001316699	70427	Mm.334193	NM_027422	ENSMUSG00000042570	Mier2	2700087H15Rik|mKIAA1193	MIER family member 2	protein-coding	0.035000	0.611940	
mm_144824.1	chr18	36344483	36344683	+	1	NA	NA	NA	-4041	NM_001081365	66060	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.010000	0.447761	
mm_83663.1	chr9	49570737	49570937	-	1	NA	NA	NA	52549	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.000000	0.537313	
mm_64909.1	chr7	16052717	16052917	-	1	NA	NA	NA	-19028	NM_001347559	666528	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.050000	0.616915	
mm_112376.1	chr12	119227712	119227912	-	1	NA	NA	NA	10464	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.000000	0.338308	82(AGTTTTAAAAGG,-,0.00),83(GTTTTAAAAGGT,+,0.00)
mm_16616.1	chr2	5538599	5538799	-	1	NA	NA	NA	137347	NM_001290376	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.005000	0.432836	
mm_123507.1	chr14	66235474	66235674	-	1	NA	NA	NA	-22022	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.010000	0.482587	
mm_34888.1	chr4	155601293	155601493	+	1	NA	NA	NA	-23	NM_177186	320541	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	0.080000	0.631841	
mm_42973.1	chr5	123142108	123142308	+	1	NA	NA	NA	15	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.085000	0.711443	
mm_81865.1	chr9	118947229	118947429	+	1	NA	NA	NA	20793	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.010000	0.353234	
mm_26023.1	chr3	135438651	135438851	+	1	NA	NA	NA	-8	NM_025356	66105	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.145000	0.746269	
mm_95364.1	chr11	48910479	48910679	+	1	NA	NA	NA	-8427	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.000000	0.393035	-13(CACCTTAAAGGG,-,0.00),-11(CCTTAAAGGGCC,+,0.00)
mm_127894.1	chr15	9155307	9155507	-	1	NA	NA	NA	18	NM_001285980	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.005000	0.472637	-50(CTGTTTAAAAGG,-,0.00)
mm_128717.1	chr15	63998080	63998280	-	1	NA	NA	NA	62268	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.110000	0.721393	
mm_127816.1	chr15	5108293	5108493	-	1	NA	NA	NA	140	NM_001163138	239319	Mm.31252	NM_001163138	ENSMUSG00000041849	Card6	D730008L15	caspase recruitment domain family, member 6	protein-coding	0.025000	0.407960	
mm_93138.1	chr10	92164575	92164775	-	1	NA	NA	NA	503	NR_028262	110333	Mm.429764	NR_028262		Rmst	100041799|AI853140|C230053E11Rik|D930049J19Rik|Dmt2|Gm3515|M2|Ncrms	rhabdomyosarcoma 2 associated transcript (non-coding RNA)	ncRNA	0.025000	0.457711	
mm_33991.1	chr4	137862196	137862396	+	1	NA	NA	NA	59	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.110000	0.716418	
mm_164761.1	chr17	85618254	85618454	-	1	NA	NA	NA	42	NR_038084	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.065000	0.641791	
mm_12185.1	chr2	65238694	65238894	+	1	NA	NA	NA	-168	NM_027225	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.105000	0.716418	
mm_135520.1	chr16	48871804	48872004	-	1	NA	NA	NA	-704	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.000000	0.457711	
mm_125203.1	chr15	33083029	33083229	+	1	NA	NA	NA	0	NM_018755	54381	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0.040000	0.666667	
mm_140640.1	chr17	12675606	12675806	-	1	NA	NA	NA	132	NM_009202	20517	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.030000	0.562189	
mm_11625.1	chr2	34774613	34774813	+	1	NA	NA	NA	2623	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.020000	0.482587	
mm_127683.1	chr15	102966645	102966845	+	1	NA	NA	NA	-51	NM_010462	209448	Mm.31665	NM_010462	ENSMUSG00000022484	Hoxc10	AI506621|Hox-3.6	homeobox C10	protein-coding	0.040000	0.532338	87(CTCCTTAAAAAC,-,0.00),89(CCTTAAAAACCC,+,0.00)
mm_119302.1	chr14	34714830	34715030	+	1	NA	NA	NA	41002	NM_001301330	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.005000	0.333333	
mm_152261.1	chr19	8786336	8786536	-	1	NA	NA	NA	-19	NM_001177798	225895	Mm.220886	NM_146092	ENSMUSG00000003680	Taf6l	2810417N14Rik|BB223262|C530024J06Rik|Paf65a	TATA-box binding protein associated factor 6 like	protein-coding	0.035000	0.502488	-14(GCTTTAAGAAGC,+,0.00)
mm_36137.1	chr4	59349916	59350116	-	1	NA	NA	NA	88617	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.005000	0.467662	-95(AACTTTATAGGG,-,0.00),-93(CTTTATAGGGGA,+,0.00)
mm_123191.1	chr14	57925307	57925507	-	1	NA	NA	NA	-35145	NM_029492	75965	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|ENSMUSG00000055956|HK11	zinc finger, DHHC domain containing 20	protein-coding	0.015000	0.472637	-29(CTGTCTAAAAGC,-,0.00)
mm_1486.1	chr1	71651490	71651690	+	1	NA	NA	NA	1644	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.030000	0.517413	
mm_80684.1	chr9	91368720	91368920	+	1	NA	NA	NA	-152	NM_009576	22774	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.010000	0.437811	-97(TGCTTTAAAAAA,-,0.00)
mm_99716.1	chr11	106262127	106262327	+	1	NA	NA	NA	5405	NM_031878	83796	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	0.030000	0.537313	
mm_25709.1	chr3	122511178	122511378	+	1	NA	NA	NA	30403	NR_106117	102465764		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.030000	0.567164	
mm_161594.1	chr16	36131144	36131344	-	1	NA	NA	NA	-55	NM_001033239	209294	Mm.300592	NM_001033239	ENSMUSG00000034362	Csta1	Csta	cystatin A1	protein-coding	0.005000	0.482587	
mm_34609.1	chr4	150281503	150281703	+	1	NA	NA	NA	-313	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.150000	0.771144	
mm_171899.1	chr5	41832717	41832917	-	1	NA	NA	NA	11498	NM_001310601	665775	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0.005000	0.472637	
mm_56290.1	chr6	91493050	91493250	-	1	NA	NA	NA	19399	NM_028766	74122	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	0.035000	0.606965	
mm_101914.1	chr11	49712639	49712839	-	1	NA	NA	NA	-17	NM_212484	104625	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0.120000	0.686567	
mm_87440.1	chr10	51480745	51480945	+	1	NA	NA	NA	233	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.005000	0.432836	
mm_55192.1	chr6	52191288	52191488	-	1	NA	NA	NA	315	NM_008265	15401	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	0.165000	0.855721	
mm_99405.1	chr11	102248765	102248965	+	1	NA	NA	NA	-17	NM_153544	217216	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	0.065000	0.542289	-86(TTCCCTTTAAGG,-,0.00),-84(CCCTTTAAGGCT,+,0.00),-83(CCTTTAAGGCTG,+,0.00),-16(TTCCCTTTAAGG,-,0.00),-15(TCCCTTTAAGGG,-,0.00),-14(CCCTTTAAGGGG,+,0.00),-14(CCCTTTAAGGGG,-,0.00),-13(CCTTTAAGGGGG,+,0.00),78(CGGTCTTAAAGA,-,0.00)
mm_116397.1	chr13	41220239	41220439	-	1	NA	NA	NA	64	NM_019423	54326	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0.190000	0.796020	
mm_11312.1	chr2	30286324	30286524	+	1	NA	NA	NA	-9	NM_198304	227699	Mm.330119	NM_198304	ENSMUSG00000052533	Nup188	BC025526|U89435|mKIAA0169	nucleoporin 188	protein-coding	0.110000	0.746269	
mm_72085.1	chr8	71579182	71579382	+	1	NA	NA	NA	10355	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.005000	0.507463	-83(GGCCATTTAGGG,-,0.00),-81(CCATTTAGGGAC,+,0.00),28(AGCCATTAAAGG,-,0.00),30(CCATTAAAGGAC,+,0.00)
mm_64079.1	chr7	140941483	140941683	+	1	NA	NA	NA	2	NM_145387	212974	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0.055000	0.621891	
mm_117914.1	chr13	99431338	99431538	-	1	NA	NA	NA	-18612	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.025000	0.512438	
mm_88803.1	chr10	80752489	80752689	+	1	NA	NA	NA	-2617	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.010000	0.492537	-45(CTCTCTAAAGGG,-,0.00)
mm_153265.1	chr19	37077343	37077543	-	1	NA	NA	NA	-96400	NR_045329	319931	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.015000	0.527363	30(TGCTAGAAAAGG,-,0.00)
mm_140522.1	chr17	6122082	6122282	-	1	NA	NA	NA	15352	NM_001103181	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.050000	0.592040	-72(GGCTTTAAGAAC,-,0.00),-71(GCTTTAAGAACC,+,0.00)
mm_64043.1	chr7	140834829	140835029	+	1	NA	NA	NA	-209	NM_001347605	76974	Mm.272359	NM_029821	ENSMUSG00000025481	Urah	1190003J15Rik|2810420C16Rik	urate (5-hydroxyiso-) hydrolase	protein-coding	0.000000	0.567164	
mm_80138.1	chr9	70729811	70730011	+	1	NA	NA	NA	50929	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.000000	0.293532	
mm_27360.1	chr3	50429736	50429936	-	1	NA	NA	NA	13777	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.348259	
mm_82699.1	chr9	22445438	22445638	-	1	NA	NA	NA	22818	NM_018739	55934	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	0.000000	0.457711	
mm_115444.1	chr13	117947022	117947222	+	1	NA	NA	NA	-227111	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA	0.015000	0.402985	
mm_18575.1	chr2	65567416	65567616	-	1	NA	NA	NA	-24	NM_018732	20269	Mm.330256	NM_018732	ENSMUSG00000057182	Scn3a	Gm1000|Nav1.3	sodium channel, voltage-gated, type III, alpha	protein-coding	0.025000	0.407960	
mm_24782.1	chr3	95540193	95540393	+	1	NA	NA	NA	13507	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.005000	0.412935	
mm_25378.1	chr3	107211352	107211552	+	1	NA	NA	NA	10280	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.522388	
mm_150946.1	chr19	46308741	46308941	+	1	NA	NA	NA	2911	NM_001177370	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.015000	0.597015	
mm_141462.1	chr17	30576177	30576377	-	1	NA	NA	NA	10	NM_172618	224671	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0.175000	0.751244	
mm_5317.1	chr1	22783423	22783623	-	1	NA	NA	NA	22201	NM_001012625	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.015000	0.388060	
mm_63231.1	chr7	126459568	126459768	+	1	NA	NA	NA	3405	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.060000	0.547264	
mm_108032.1	chr12	73741860	73742060	+	1	NA	NA	NA	157164	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.010000	0.398010	
mm_122743.1	chr14	54149154	54149354	-	1	NA	NA	NA	104675	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.025000	0.547264	
mm_95975.1	chr11	58961822	58962022	+	1	NA	NA	NA	211	NM_001318003	382523		NM_001318003		Gm12260	H3t|OTTMUSG00000005773	predicted gene 12260	protein-coding	0.115000	0.681592	
mm_2738.1	chr1	128256092	128256292	+	1	NA	NA	NA	12011	NM_026390	67812	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0.005000	0.368159	
mm_127842.1	chr15	6874213	6874413	-	1	NA	NA	NA	0	NM_011019	18414	Mm.10760	NM_011019	ENSMUSG00000022146	Osmr	OSMRB	oncostatin M receptor	protein-coding	0.095000	0.671642	
mm_6399.1	chr1	72861567	72861767	-	1	NA	NA	NA	13198	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.020000	0.412935	
mm_5214.1	chr1	13660415	13660615	-	1	NA	NA	NA	-6	NM_145381	212442	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	0.110000	0.661692	
mm_44510.1	chr5	24266634	24266834	-	1	NA	NA	NA	9206	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.025000	0.527363	
mm_139492.1	chr17	56134175	56134375	+	1	NA	NA	NA	-423	NM_013662	20359	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0.020000	0.532338	
mm_101887.1	chr11	48992213	48992413	-	1	NA	NA	NA	-67	NM_011579	21822	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	0.005000	0.442786	
mm_80402.1	chr9	77636442	77636642	+	1	NA	NA	NA	-190	NM_172925	244923	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0.025000	0.592040	
mm_40439.1	chr5	53590622	53590822	+	1	NA	NA	NA	236	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.115000	0.711443	
mm_41246.1	chr5	88781935	88782135	+	1	NA	NA	NA	17022	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.005000	0.343284	41(ATCTTTAAGAGG,-,0.00)
mm_57756.1	chr6	129229141	129229341	-	1	NA	NA	NA	8804	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.010000	0.417910	-50(CCCTTTAGAGAT,+,0.00)
mm_88961.1	chr10	81393736	81393936	+	1	NA	NA	NA	772	NM_001099917	72273	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.030000	0.577114	
mm_9781.1	chr1	181211656	181211856	-	1	NA	NA	NA	222	NM_145514	226757	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.145000	0.810945	
mm_112784.1	chr13	20098088	20098288	+	1	NA	NA	NA	7681	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.020000	0.477612	
mm_90212.1	chr10	120787160	120787360	+	1	NA	NA	NA	21528	NR_038003	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.020000	0.552239	-54(TGCTTTAAAGGC,-,0.00),-53(GCTTTAAAGGCT,+,0.00)
mm_13147.1	chr2	92246117	92246317	+	1	NA	NA	NA	24655	NM_001109690	192285	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0.005000	0.402985	
mm_25806.1	chr3	127789772	127789972	+	1	NA	NA	NA	-41	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.060000	0.651741	
mm_31847.1	chr4	74259554	74259754	+	1	NA	NA	NA	7775	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.005000	0.447761	
mm_172685.1	chr8	57183457	57183657	+	1	NA	NA	NA	137302	NR_110474	102636514		NR_110474	ENSMUSG00000100510	Uph	-	upperhand	ncRNA	0.030000	0.547264	
mm_56958.1	chr6	120037801	120038001	-	1	NA	NA	NA	754	NM_001199083	232341	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0.110000	0.721393	
mm_100063.1	chr11	115334719	115334919	+	1	NA	NA	NA	85	NM_027132	69602	Mm.101844	NM_027132	ENSMUSG00000018862	Otop3	2310011E08Rik	otopetrin 3	protein-coding	0.080000	0.621891	
mm_155846.1	chrX	101266795	101266995	+	1	NA	NA	NA	1360	NM_001308535	16186	Mm.2923	NM_013563	ENSMUSG00000031304	Il2rg	CD132|[g]c|gamma(c)|gc|p64	interleukin 2 receptor, gamma chain	protein-coding	0.015000	0.487562	
mm_132484.1	chr16	36887248	36887448	+	1	NA	NA	NA	2337	NM_030035	224139	Mm.244815	NM_030035	ENSMUSG00000034243	Golgb1	4930428L02Rik|628101|6330407A06Rik|AU042952|C130074L01Rik|F730017E11Rik|Gm6840|mKIAA4151	golgi autoantigen, golgin subfamily b, macrogolgin 1	protein-coding	0.030000	0.477612	
mm_141889.1	chr17	34861074	34861274	-	1	NA	NA	NA	1340	NM_001142706	14962	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0.040000	0.502488	
mm_64235.1	chr7	141697091	141697291	+	1	NA	NA	NA	6851	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.020000	0.567164	
mm_69430.1	chr7	132813591	132813791	-	1	NA	NA	NA	-495	NM_212473	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.135000	0.676617	
mm_134785.1	chr16	23988504	23988704	-	1	NA	NA	NA	8	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.070000	0.587065	
mm_118166.1	chr13	105294562	105294762	-	1	NA	NA	NA	-1648	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.010000	0.537313	
mm_154610.1	chrX	7651889	7652089	+	1	NA	NA	NA	-5390	NM_001290624	54630	Mm.232232	NM_175097	ENSMUSG00000031145	Prickle3	Lmo6|Sfc16	prickle planar cell polarity protein 3	protein-coding	0.000000	0.507463	
mm_112951.1	chr13	21166081	21166281	+	1	NA	NA	NA	-13750	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.015000	0.457711	-87(GCCTTTAGAGGT,+,0.00),45(TGGCATTAAAGC,-,0.00)
mm_149150.1	chr19	9010525	9010725	+	1	NA	NA	NA	-7279	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.005000	0.383085	28(ACTTAAAAAGCC,+,0.00)
mm_140112.1	chr17	78840874	78841074	+	1	NA	NA	NA	5458	NM_181649	53951	Mm.220253	NM_181649	ENSMUSG00000050668	Gpatch11	2310002B06Rik|C80922|Ccdc75|L26697	G patch domain containing 11	protein-coding	0.020000	0.343284	
mm_13640.1	chr2	114048091	114048291	+	1	NA	NA	NA	4684	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.020000	0.487562	
mm_167316.1	chr8	66386242	66386442	+	1	NA	NA	NA	41	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.000000	0.373134	
mm_100873.1	chr11	5949904	5950104	-	1	NA	NA	NA	77	NM_010292	103988	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	0.010000	0.547264	
mm_160830.1	chr11	46312726	46312926	-	1	NA	NA	NA	33	NM_001252459	76884	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0.025000	0.552239	
mm_46855.1	chr5	113724680	113724880	-	1	NA	NA	NA	-8	NR_033216	381707	Mm.159016	NR_033216	ENSMUSG00000042184	1700069L16Rik	1700096P12Rik	RIKEN cDNA 1700069L16 gene	ncRNA	0.045000	0.577114	
mm_88191.1	chr10	70060056	70060256	+	1	NA	NA	NA	-36965	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.045000	0.552239	
mm_37898.1	chr4	132617814	132618014	-	1	NA	NA	NA	-21132	NM_210071	14050	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0.010000	0.477612	
mm_88784.1	chr10	80603190	80603390	+	1	NA	NA	NA	408	NM_019575	56214	Mm.273170	NM_019575	ENSMUSG00000078441	Scamp4	2410022D05Rik|AI448940|AU022392|AW742369|Sc4	secretory carrier membrane protein 4	protein-coding	0.035000	0.522388	35(CCCTTTAAGCTC,+,0.00)
mm_59971.1	chr7	30454456	30454656	+	1	NA	NA	NA	2959	NM_172898	243911	Mm.113908	NM_172898	ENSMUSG00000036915	Kirrel2	C330019F22Rik|NEPH3|NLG1	kin of IRRE like 2 (Drosophila)	protein-coding	0.020000	0.562189	
mm_43134.1	chr5	125389234	125389434	+	1	NA	NA	NA	683	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.105000	0.661692	
mm_93744.1	chr10	120159413	120159613	-	1	NA	NA	NA	42024	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.005000	0.422886	
mm_63155.1	chr7	123418166	123418366	+	1	NA	NA	NA	40284	NM_025304	30949	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0.010000	0.447761	
mm_151871.1	chr19	5797935	5798135	-	1	NA	NA	NA	-2054	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.010000	0.417910	39(GAGTTTAAATGC,-,0.00)
mm_123646.1	chr14	68655681	68655881	-	1	NA	NA	NA	61	NM_010082	13522	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	0.025000	0.547264	15(TCCCTTAAGAGG,-,0.00),16(CCCTTAAGAGGA,+,0.00)
mm_36586.1	chr4	88418173	88418373	-	1	NA	NA	NA	20653	NM_025760	66775	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.000000	0.442786	
mm_99889.1	chr11	109488481	109488681	+	1	NA	NA	NA	-14985	NM_001029842	104681	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.025000	0.507463	
mm_137567.1	chr17	27825190	27825390	+	1	NA	NA	NA	-4748	NM_001271511	224647	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0.015000	0.462687	
mm_85270.1	chr9	99436496	99436696	-	1	NA	NA	NA	116	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.165000	0.820896	
mm_150366.1	chr19	34649669	34649869	+	1	NA	NA	NA	8880	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.010000	0.442786	79(GCCTATATATGA,-,0.00)
mm_28905.1	chr3	98382300	98382500	-	1	NA	NA	NA	-81	NM_172863	242109	Mm.358911	NM_172863	ENSMUSG00000050064	Zfp697	9430053K19|AI467503|Znf697	zinc finger protein 697	protein-coding	0.040000	0.611940	
mm_135619.1	chr16	52271665	52271865	-	1	NA	NA	NA	181316	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.283582	
mm_22050.1	chr2	168281007	168281207	-	1	NA	NA	NA	-11776	NM_001081134	241794	Mm.425102	NM_001081134	ENSMUSG00000074575	Kcng1	AW536275|OTTMUSG00000016048	potassium voltage-gated channel, subfamily G, member 1	protein-coding	0.125000	0.796020	
mm_63874.1	chr7	136268228	136268428	+	1	NA	NA	NA	4	NR_102277	77383	Mm.227745	NR_102277	ENSMUSG00000110027	C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA	0.000000	0.562189	
mm_168879.1	chr12	42745701	42745901	-	1	NA	NA	NA	-1259744	NM_010733	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.060000	0.656716	
mm_95184.1	chr11	42420669	42420869	+	1	NA	NA	NA	-581	NM_001347314	14401	Mm.338723	NM_008070	ENSMUSG00000007653	Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding	0.025000	0.557214	
mm_164789.1	chr18	12490686	12490886	+	1	NA	NA	NA	-13413	NM_001347461	16774	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0.005000	0.512438	
mm_20322.1	chr2	127335770	127335970	-	1	NA	NA	NA	-289	NM_010090	13537	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.025000	0.552239	
mm_14748.1	chr2	144527697	144527897	+	1	NA	NA	NA	52	NM_029763	70408	Mm.389351	NM_029763	ENSMUSG00000027427	Polr3f	2810411G20Rik|3010019O03Rik|3110032A07Rik|RPC39|RPC6	polymerase (RNA) III (DNA directed) polypeptide F	protein-coding	0.110000	0.666667	
mm_121943.1	chr14	24081887	24082087	-	1	NA	NA	NA	-6890	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.010000	0.482587	
mm_182.1	chr1	14869632	14869832	+	1	NA	NA	NA	49130	NM_177781	277328	Mm.186329	NM_177781	ENSMUSG00000032769	Trpa1	Anktm1|TRPA1b	transient receptor potential cation channel, subfamily A, member 1	protein-coding	0.015000	0.427861	
mm_105623.1	chr11	106789075	106789275	-	1	NA	NA	NA	-77	NM_177088	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.090000	0.641791	
mm_154147.1	chr19	58454251	58454451	-	1	NA	NA	NA	1047	NM_001285457	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.075000	0.636816	
mm_11544.1	chr2	32646557	32646757	+	1	NA	NA	NA	62	NM_001146348	13805	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	0.035000	0.646766	
mm_13959.1	chr2	121359464	121359664	+	1	NA	NA	NA	923	NM_009897	12716	Mm.252145	NM_009897	ENSMUSG00000000308	Ckmt1	Mt-CK|ScCKmit|UbCKmit|mi-CK	creatine kinase, mitochondrial 1, ubiquitous	protein-coding	0.020000	0.582090	
mm_2909.1	chr1	132007520	132007720	+	1	NA	NA	NA	15	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.130000	0.696517	
mm_94689.1	chr11	19924331	19924531	+	1	NA	NA	NA	-11	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.085000	0.621891	
mm_65864.1	chr7	29443451	29443651	-	1	NA	NA	NA	61909	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.010000	0.462687	
mm_153984.1	chr19	47918826	47919026	-	1	NA	NA	NA	373	NM_001001738	414801	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER|mKIAA1754	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	0.060000	0.636816	-32(CTCTTTTAATGC,-,0.00),-30(CTTTTAATGCAC,+,0.00)
mm_169613.1	chr15	3748035	3748235	-	1	NA	NA	NA	-164783	NM_010284	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.010000	0.482587	-37(CCCCTTATAAGC,-,0.00),-35(CCTTATAAGCAC,+,0.00)
mm_97544.1	chr11	78924114	78924314	+	1	NA	NA	NA	-526	NM_001313921	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.020000	0.542289	
mm_65946.1	chr7	30417476	30417676	-	1	NA	NA	NA	2278	NM_011827	23900	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	0.020000	0.477612	
mm_167210.1	chr8	3353627	3353827	+	1	NA	NA	NA	312	NM_001033378	319493	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0.020000	0.527363	
mm_66025.1	chr7	30612666	30612866	-	1	NA	NA	NA	-32	NM_026815	109637	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	0.000000	0.557214	-3(GCATATATAGGG,+,0.00),-3(GCATATATAGGG,-,0.00)
mm_20188.1	chr2	122609748	122609948	-	1	NA	NA	NA	1429	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.010000	0.502488	-48(GCTTTTAAGCTT,+,0.00)
mm_19484.1	chr2	93046348	93046548	-	1	NA	NA	NA	-304	NM_001177536	100042784	Mm.102816	NM_001177536	ENSMUSG00000075028	Prdm11	8030443D09Rik|AA163972|Gm707	PR domain containing 11	protein-coding	0.055000	0.537313	
mm_12937.1	chr2	85136249	85136449	+	1	NA	NA	NA	-11	NM_011784	23796	Mm.29368	NM_011784	ENSMUSG00000044338	Aplnr	APJ|Agtrl1|msr/apj	apelin receptor	protein-coding	0.005000	0.527363	
mm_51107.1	chr6	67281989	67282189	+	1	NA	NA	NA	15110	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.000000	0.373134	
mm_155825.1	chrX	100729741	100729941	+	1	NA	NA	NA	-6	NM_023608	71584	Mm.283495	NM_023608	ENSMUSG00000019359	Gdpd2	9130017L10Rik|Gde3|Obdpf	glycerophosphodiester phosphodiesterase domain containing 2	protein-coding	0.005000	0.606965	
mm_172962.1	chr9	88599357	88599557	-	1	NA	NA	NA	-214	NR_040766	320692	Mm.427378	NR_040766	ENSMUSG00000097073	9430037G07Rik	-	RIKEN cDNA 9430037G07 gene	ncRNA	0.050000	0.577114	-34(AACTATAAAGGG,-,0.00),3(TCTTTTAGGCCG,+,0.00)
mm_59085.1	chr7	19691803	19692003	+	1	NA	NA	NA	756	NM_001110009	11812	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0.060000	0.537313	
mm_113169.1	chr13	24813399	24813599	+	1	NA	NA	NA	11842	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.015000	0.373134	-59(GCATTTATACAC,+,0.00)
mm_51945.1	chr6	91725980	91726180	+	1	NA	NA	NA	42013	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.025000	0.537313	
mm_133891.1	chr16	97391239	97391439	+	1	NA	NA	NA	34611	NM_019517	56175	Mm.97885	NM_019517	ENSMUSG00000040605	Bace2	1110059C24Rik|AEPLC|AI850424|ALP56|ARP1|ASP1|ASP21|BAE2|CDA13|CEAP1|DRAP	beta-site APP-cleaving enzyme 2	protein-coding	0.005000	0.487562	-100(ACCTTTTTAAGG,-,0.00),-98(CTTTTTAAGGCT,+,0.00)
mm_63547.1	chr7	128068021	128068221	+	1	NA	NA	NA	5481	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.010000	0.462687	
mm_135388.1	chr16	44332578	44332778	-	1	NA	NA	NA	160	NM_198034	320007	Mm.242144	NM_198034	ENSMUSG00000022696	Sidt1	AW045928|B830021E24Rik	SID1 transmembrane family, member 1	protein-coding	0.065000	0.656716	
mm_136689.1	chr17	6828268	6828468	+	1	NA	NA	NA	-45588	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.065000	0.651741	
mm_161175.1	chr13	41109963	41110163	-	1	NA	NA	NA	-75	NM_008104	107889	Mm.1399	NM_008104	ENSMUSG00000021362	Gcm2	Gcm-rs1|Gcm1|Gcm1-rs2	glial cells missing homolog 2 (Drosophila)	protein-coding	0.005000	0.517413	
mm_49294.1	chr6	17693915	17694115	+	1	NA	NA	NA	21	NM_001289625	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.135000	0.706468	
mm_121412.1	chr14	119513042	119513242	+	1	NA	NA	NA	-236085	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA	0.010000	0.467662	
mm_127207.1	chr15	99224459	99224659	+	1	NA	NA	NA	-417	NM_010601	16512	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0.075000	0.716418	-45(GTCTCTTTAAGG,-,0.00),-43(CTCTTTAAGGAG,+,0.00)
mm_78829.1	chr9	44107652	44107852	+	1	NA	NA	NA	443	NM_001190319	235312	Mm.227110	NM_145613	ENSMUSG00000079592	C1qtnf5	Ctrp5	C1q and tumor necrosis factor related protein 5	protein-coding	0.025000	0.606965	
mm_154492.1	chrM	6138	6338	-	1	NA	NA	NA	NA	NA									0.020000	0.388060	
mm_71226.1	chr8	40902434	40902634	+	1	NA	NA	NA	-23699	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.000000	0.417910	
mm_150749.1	chr19	43788312	43788512	+	1	NA	NA	NA	6104	NM_013806	12780	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0.025000	0.442786	
mm_81969.1	chr9	120959870	120960070	+	1	NA	NA	NA	4884	NR_106058	102465661		NR_106058	ENSMUSG00000106193	Mir7090	mmu-mir-7090	microRNA 7090	ncRNA	0.030000	0.437811	
mm_92048.1	chr10	62497743	62497943	-	1	NA	NA	NA	9912	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.045000	0.492537	
mm_57131.1	chr6	122602313	122602513	-	1	NA	NA	NA	31	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.045000	0.567164	7(TTCTCTAAAAGC,-,0.00)
mm_45903.1	chr5	88720676	88720876	-	1	NA	NA	NA	-95	NM_026735	68473	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	0.095000	0.681592	
mm_77968.1	chr9	7790899	7791099	+	1	NA	NA	NA	6609	NR_049191	100885830		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0.025000	0.472637	
mm_68473.1	chr7	110785032	110785232	-	1	NA	NA	NA	12528	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.030000	0.552239	
mm_14520.1	chr2	132686863	132687063	+	1	NA	NA	NA	-3320	NM_028637	73747	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0.065000	0.572139	-54(CCTTTTAAACTC,+,0.00)
mm_27450.1	chr3	52009075	52009275	-	1	NA	NA	NA	95831	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.005000	0.487562	
mm_33585.1	chr4	132553200	132553400	+	1	NA	NA	NA	-10767	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.030000	0.462687	
mm_188.1	chr1	15545378	15545578	+	1	NA	NA	NA	233026	NM_001098528	98741	Mm.156081	NM_001033195	ENSMUSG00000092083	Kcnb2	9630047L19Rik|BB130875|Kv2.2	potassium voltage gated channel, Shab-related subfamily, member 2	protein-coding	0.015000	0.398010	
mm_53632.1	chr6	140591512	140591712	+	1	NA	NA	NA	-31051	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.020000	0.537313	
mm_148651.1	chr19	5493631	5493831	+	1	NA	NA	NA	3276	NM_007687	12631	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.030000	0.557214	
mm_7791.1	chr1	131495303	131495503	-	1	NA	NA	NA	31958	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.000000	0.412935	
mm_28171.1	chr3	87996262	87996462	-	1	NA	NA	NA	3994	NM_007529	12032	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0.000000	0.562189	
mm_102198.1	chr11	54530943	54531143	-	1	NA	NA	NA	8198	NM_001252496	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.005000	0.467662	
mm_37353.1	chr4	120286887	120287087	-	1	NA	NA	NA	274	NM_194060	329934	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	0.120000	0.661692	
mm_43669.1	chr5	138770104	138770304	+	1	NA	NA	NA	15123	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.020000	0.477612	
mm_58393.1	chr7	3206962	3207162	+	1	NA	NA	NA	-11564	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.015000	0.462687	
mm_26603.1	chr3	152210360	152210560	+	1	NA	NA	NA	2	NM_057172	51886	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	0.105000	0.626866	
mm_70438.1	chr8	11713164	11713364	+	1	NA	NA	NA	-14841	NM_001113517	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.030000	0.472637	
mm_52304.1	chr6	108822238	108822438	+	1	NA	NA	NA	-6303	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.010000	0.348259	-41(CTTTTTTAAAGG,-,0.00),-40(TTTTTTAAAGGG,+,0.00)
mm_132059.1	chr16	29843518	29843718	+	1	NA	NA	NA	135506	NR_037689	328657	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.015000	0.472637	
mm_19332.1	chr2	90579288	90579488	-	1	NA	NA	NA	1259	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.020000	0.437811	
mm_46190.1	chr5	97980586	97980786	-	1	NA	NA	NA	50276	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.045000	0.517413	51(CGCTTTAAGTGG,-,0.00)
mm_165224.1	chr2	51528779	51528979	+	1	NA	NA	NA	-90979	NR_130155	73375	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	0.005000	0.363184	
mm_134759.1	chr16	23226674	23226874	-	1	NA	NA	NA	753	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.025000	0.542289	
mm_142081.1	chr17	35703883	35704083	-	1	NA	NA	NA	156	NM_007584	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.035000	0.621891	
mm_77510.1	chr8	122892911	122893111	-	1	NA	NA	NA	44637	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.030000	0.547264	
mm_127824.1	chr15	5244085	5244285	-	1	NA	NA	NA	2	NM_001136079	19219	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.080000	0.661692	
mm_91018.1	chr10	17696476	17696676	-	1	NA	NA	NA	-26652	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.010000	0.378109	
mm_4794.1	chr1	184729423	184729623	+	1	NA	NA	NA	2970	NM_008250	15284	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.025000	0.432836	
mm_147618.1	chr18	57551789	57551989	-	1	NA	NA	NA	-22	NR_027945	75084	Mm.243841	NR_015494	ENSMUSG00000086607	4930511M06Rik	-	RIKEN cDNA 4930511M06 gene	ncRNA	0.020000	0.552239	
mm_163279.1	chr11	116359175	116359375	-	1	NA	NA	NA	-23921	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.020000	0.492537	
mm_97703.1	chr11	80177880	80178080	+	1	NA	NA	NA	-5892	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.000000	0.512438	
mm_45817.1	chr5	87680794	87680994	-	1	NA	NA	NA	14686	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.417910	
mm_166420.1	chr5	137151618	137151818	-	1	NA	NA	NA	-35511	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.482587	
mm_38765.1	chr4	147904551	147904751	-	1	NA	NA	NA	47	NM_001285923	170731	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0.105000	0.741294	
mm_91141.1	chr10	19851440	19851640	-	1	NA	NA	NA	-81	NM_029529	76157	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	0.085000	0.671642	
mm_4857.1	chr1	187608938	187609138	+	1	NA	NA	NA	32	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.085000	0.572139	-54(CTATTTATAGTC,+,0.00)
mm_141611.1	chr17	32810578	32810778	-	1	NA	NA	NA	-747	NM_183177	240063	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	0.005000	0.432836	
mm_4552.1	chr1	177442409	177442609	+	1	NA	NA	NA	-2152	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.185000	0.855721	
mm_103784.1	chr11	82780961	82781161	-	1	NA	NA	NA	-19	NR_126067	100503272	Mm.486964	NR_126067	ENSMUSG00000085175	Gm11423	-	predicted gene 11423	ncRNA	0.075000	0.587065	
mm_60509.1	chr7	44479491	44479691	+	1	NA	NA	NA	-4926	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.010000	0.467662	
mm_95786.1	chr11	54956099	54956299	+	1	NA	NA	NA	6741	NM_021327	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.100000	0.681592	
mm_30094.1	chr3	138239562	138239762	-	1	NA	NA	NA	1	NR_045760	68369	Mm.441136	NR_045760	ENSMUSG00000099146	0610031O16Rik	-	RIKEN cDNA 0610031O16 gene	ncRNA	0.025000	0.452736	
mm_1875.1	chr1	85600953	85601153	+	1	NA	NA	NA	350	NM_001013817	434484	Mm.445821	NM_001013817	ENSMUSG00000070031	Sp140	-	Sp140 nuclear body protein	protein-coding	0.005000	0.557214	
mm_90632.1	chr10	128484925	128485125	+	1	NA	NA	NA	7984	NM_001317220	17904	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.000000	0.348259	
mm_25481.1	chr3	109080375	109080575	+	1	NA	NA	NA	-24	NM_029054	74686	Mm.307948	NM_029054	ENSMUSG00000027880	Slc25a54	4930443G12Rik|SCaMC-1like	solute carrier family 25, member 54	protein-coding	0.065000	0.646766	
mm_46175.1	chr5	96922049	96922249	-	1	NA	NA	NA	877	NR_131152	666266	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0.025000	0.542289	
mm_136480.1	chr16	96006705	96006905	-	1	NA	NA	NA	-15902	NM_019537	56088	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	0.020000	0.417910	
mm_152599.1	chr19	11640750	11640950	-	1	NA	NA	NA	1	NM_133246	170813	Mm.240438	NM_133246	ENSMUSG00000024681	Ms4a3	HTm4	membrane-spanning 4-domains, subfamily A, member 3	protein-coding	0.005000	0.487562	
mm_37976.1	chr4	133598714	133598914	-	1	NA	NA	NA	3354	NM_018754	55948	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	0.005000	0.507463	
mm_120785.1	chr14	74689045	74689245	+	1	NA	NA	NA	-43152	NM_001285423	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.020000	0.427861	
mm_128917.1	chr15	73707301	73707501	-	1	NA	NA	NA	104	NM_173365	239530	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	0.025000	0.666667	
mm_9036.1	chr1	167236538	167236738	-	1	NA	NA	NA	48489	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.055000	0.497512	
mm_168644.1	chr1	185155444	185155644	+	1	NA	NA	NA	-48624	NM_001163754	98732	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	0.040000	0.547264	
mm_17828.1	chr2	33887770	33887970	-	1	NA	NA	NA	76	NM_175184	72543	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.025000	0.611940	
mm_13270.1	chr2	98666963	98667163	+	1	NA	NA	NA	1199406	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.020000	0.348259	
mm_166267.1	chr5	88815764	88815964	+	1	NA	NA	NA	50851	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.015000	0.482587	
mm_7983.1	chr1	134105753	134105953	-	1	NA	NA	NA	-5389	NM_001284524	71884	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.010000	0.507463	
mm_96693.1	chr11	69599927	69600127	+	1	NA	NA	NA	5933	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.025000	0.462687	56(GTTTTTTAAAGG,-,0.00),57(TTTTTTAAAGGC,+,0.00)
mm_135023.1	chr16	32520441	32520641	-	1	NA	NA	NA	24260	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.035000	0.601990	
mm_140495.1	chr17	3557659	3557859	-	1	NA	NA	NA	-46	NM_146074	224481	Mm.226554	NM_146074	ENSMUSG00000036983	Tfb1m	AI429207	transcription factor B1, mitochondrial	protein-coding	0.065000	0.626866	
mm_145001.1	chr18	38406362	38406562	+	1	NA	NA	NA	-12513	NM_022996	65113	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.030000	0.507463	
mm_155393.1	chrX	72825102	72825302	+	1	NA	NA	NA	24	NM_020488	57249	Mm.117125	NM_020488	ENSMUSG00000031344	Gabrq	-	gamma-aminobutyric acid (GABA) A receptor, subunit theta	protein-coding	0.080000	0.696517	
mm_7720.1	chr1	130661474	130661674	-	1	NA	NA	NA	44	NM_007576	12269	Mm.306720	NM_007576	ENSMUSG00000026405	C4bp	AI195242|C4bpa	complement component 4 binding protein	protein-coding	0.015000	0.462687	
mm_100067.1	chr11	115403656	115403856	+	1	NA	NA	NA	4	NM_001347645	68572	Mm.271062	NM_026729	ENSMUSG00000018858	Mrpl58	1110001A02Rik|1110002E03Rik|Ict1|MRP-L58	mitochondrial ribosomal protein L58	protein-coding	0.110000	0.691542	
mm_71501.1	chr8	46806404	46806604	+	1	NA	NA	NA	66759	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.030000	0.477612	
mm_111806.1	chr12	105032149	105032349	-	1	NA	NA	NA	30	NR_003145	69434	Mm.380736	NR_003145		Snhg10	1700026B20Rik|AI642517	small nucleolar RNA host gene 10	ncRNA	0.105000	0.686567	
mm_162115.1	chrX	53724581	53724781	+	1	NA	NA	NA	-150	NM_029142	75013	Mm.336332	NM_029142	ENSMUSG00000055555	4930502E18Rik	Ct55	RIKEN cDNA 4930502E18 gene	protein-coding	0.020000	0.442786	-73(ACCTATAAAAGT,-,0.00)
mm_103568.1	chr11	77892915	77893115	-	1	NA	NA	NA	857	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding	0.000000	0.527363	
mm_4333.1	chr1	171854933	171855133	+	1	NA	NA	NA	15336	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.283582	
mm_140489.1	chr17	3283092	3283292	-	1	NA	NA	NA	-43381	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.010000	0.507463	
mm_51496.1	chr6	83078538	83078738	+	1	NA	NA	NA	248	NM_197992	69837	Mm.12261	NM_197992	ENSMUSG00000069678	Pcgf1	2010002K04Rik|AU024121|Nspc1	polycomb group ring finger 1	protein-coding	0.135000	0.671642	
mm_106600.1	chr11	120730997	120731197	-	1	NA	NA	NA	924	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.020000	0.577114	
mm_138581.1	chr17	35470772	35470972	+	1	NA	NA	NA	783	NM_010391	15007	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	0.105000	0.651741	
mm_126839.1	chr15	89059636	89059836	+	1	NA	NA	NA	10	NM_001002005	406218	Mm.483059	NM_001002005	ENSMUSG00000058441	Panx2	-	pannexin 2	protein-coding	0.115000	0.676617	
mm_15777.1	chr2	164333292	164333492	+	1	NA	NA	NA	627	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.045000	0.502488	
mm_70649.1	chr8	14326532	14326732	+	1	NA	NA	NA	230757	NM_172910	244310	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	discs, large (Drosophila) homolog-associated protein 2	protein-coding	0.005000	0.432836	19(GGCTCTAAAGGG,-,0.00)
mm_43296.1	chr5	134582624	134582824	+	1	NA	NA	NA	34	NM_020022	19718	Mm.332739	NM_020022	ENSMUSG00000023104	Rfc2	2610008M13Rik|40kDa|AI326953|Recc2	replication factor C (activator 1) 2	protein-coding	0.085000	0.641791	
mm_128196.1	chr15	35150633	35150833	-	1	NA	NA	NA	5073	NM_019635	56274	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0.000000	0.348259	
mm_94226.1	chr11	3266420	3266620	+	1	NA	NA	NA	-134	NM_007879	13494	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	0.155000	0.731343	
mm_104101.1	chr11	86704096	86704296	-	1	NA	NA	NA	20115	NM_001098810	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.010000	0.457711	
mm_131193.1	chr16	7341422	7341622	+	1	NA	NA	NA	271687	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.020000	0.487562	
mm_134464.1	chr16	18426389	18426589	-	1	NA	NA	NA	72	NM_013711	26462	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0.140000	0.756219	
mm_18865.1	chr2	75705010	75705210	-	1	NA	NA	NA	-447	NM_010902	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.060000	0.616915	
mm_74623.1	chr8	13105265	13105465	-	1	NA	NA	NA	-22	NM_178708	234069	Mm.103427	NM_178708	ENSMUSG00000038542	Pcid2	A730042J05Rik	PCI domain containing 2	protein-coding	0.090000	0.651741	
mm_28451.1	chr3	90514313	90514513	-	1	NA	NA	NA	-22	NM_009113	20196	Mm.6523	NM_009113	ENSMUSG00000042312	S100a13	-	S100 calcium binding protein A13	protein-coding	0.030000	0.611940	
mm_85955.1	chr9	112121279	112121479	-	1	NA	NA	NA	-2668	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.010000	0.442786	
mm_49995.1	chr6	41047428	41047628	+	1	NA	NA	NA	-12019	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.507463	
mm_168992.1	chr12	99645224	99645424	+	1	NA	NA	NA	-17350	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.070000	0.562189	
mm_54962.1	chr6	48708169	48708369	-	1	NA	NA	NA	-25	NM_153175	231931	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	0.020000	0.427861	
mm_155656.1	chrX	85871626	85871826	+	1	NA	NA	NA	1453	NM_001163539	71398	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	0.005000	0.383085	
mm_146883.1	chr18	25680097	25680297	-	1	NA	NA	NA	73786	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.030000	0.532338	
mm_59853.1	chr7	29941460	29941660	+	1	NA	NA	NA	10333	NM_178384	72723	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77	zinc finger protein 74	protein-coding	0.020000	0.587065	
mm_146655.1	chr18	11052251	11052451	-	1	NA	NA	NA	-159	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.045000	0.651741	
mm_127814.1	chr15	5108085	5108285	-	1	NA	NA	NA	348	NM_001163138	239319	Mm.31252	NM_001163138	ENSMUSG00000041849	Card6	D730008L15	caspase recruitment domain family, member 6	protein-coding	0.040000	0.482587	
mm_140827.1	chr17	23644888	23645088	-	1	NA	NA	NA	281	NM_001033339	240047	Mm.235343	NM_001033339	ENSMUSG00000023903	Mmp25	F730048C11Rik|Leukolysin|MMP20|MT6-MMP	matrix metallopeptidase 25	protein-coding	0.045000	0.646766	
mm_82647.1	chr9	22017790	22017990	-	1	NA	NA	NA	14902	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.015000	0.467662	
mm_105406.1	chr11	103504833	103505033	-	1	NA	NA	NA	-92269	NM_183034	353047	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.040000	0.527363	
mm_70529.1	chr8	13025940	13026140	+	1	NA	NA	NA	6	NM_010172	14068	Mm.4827	NM_010172	ENSMUSG00000031443	F7	AI132620|Cf7|FVII	coagulation factor VII	protein-coding	0.015000	0.597015	
mm_72094.1	chr8	71585844	71586044	+	1	NA	NA	NA	-6240	NM_025396	66171	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	0.025000	0.582090	
mm_59066.1	chr7	19463201	19463401	+	1	NA	NA	NA	-4807	NM_172279	232944	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.005000	0.597015	
mm_4101.1	chr1	167350181	167350381	+	1	NA	NA	NA	290	NM_019993	56752	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.100000	0.651741	
mm_38267.1	chr4	136880613	136880813	-	1	NA	NA	NA	5464	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.055000	0.606965	
mm_76255.1	chr8	83739966	83740166	-	1	NA	NA	NA	1245	NM_001163029	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.000000	0.547264	
mm_54160.1	chr6	23096010	23096210	-	1	NA	NA	NA	36876	NM_013930	30956	Mm.18651	NM_013930	ENSMUSG00000029695	Aass	LKR|LKR/SDH|LOR|LOR/SDH|Lorsdh|SDH	aminoadipate-semialdehyde synthase	protein-coding	0.015000	0.393035	
mm_157039.1	chrX	7967707	7967907	-	1	NA	NA	NA	103	NM_008089	14460	Mm.335973	NM_008089	ENSMUSG00000031162	Gata1	Gata-1|Gf-1|eryf1	GATA binding protein 1	protein-coding	0.015000	0.587065	
mm_173140.1	chrX	21504458	21504658	+	1	NA	NA	NA	19934	NM_007429	11609	Mm.2679	NM_007429	ENSMUSG00000068122	Agtr2	AI316812|AW107640	angiotensin II receptor, type 2	protein-coding	0.020000	0.517413	-32(GCCTATATAAGC,-,0.00)
mm_116050.1	chr13	27434998	27435198	-	1	NA	NA	NA	3590	NM_001271379	19112	Mm.142728	NM_011167	ENSMUSG00000021345	Prl8a6	Ghd13|PLP-C1|PLP-Ca|PLP-calpha|Prlpc|Prlpc1	prolactin family 8, subfamily a, member 6	protein-coding	0.010000	0.308458	
mm_19252.1	chr2	84773346	84773546	-	1	NA	NA	NA	1983	NM_009776	12258	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.005000	0.562189	
mm_36910.1	chr4	108031984	108032184	-	1	NA	NA	NA	6	NM_001285958	242608	Mm.74710	NM_172874	ENSMUSG00000028600	Podn	9430070G18|Pcan|SLRR5A	podocan	protein-coding	0.135000	0.800995	
mm_104630.1	chr11	97435077	97435277	-	1	NA	NA	NA	-14983	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.025000	0.611940	
mm_72947.1	chr8	92189358	92189558	+	1	NA	NA	NA	166662	NR_110452	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	0.010000	0.487562	
mm_164817.1	chr18	34624501	34624701	-	1	NA	NA	NA	-23	NM_001166407	19348	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	0.075000	0.537313	79(CCTTTTATAGTC,+,0.00)
mm_34007.1	chr4	137963731	137963931	+	1	NA	NA	NA	-29625	NM_001256198	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.005000	0.492537	
mm_166063.1	chr4	134060664	134060864	+	1	NA	NA	NA	-7688	NM_001162970	230806	Mm.240080	NM_001162970	ENSMUSG00000012123	Aim1l	-	absent in melanoma 1-like	protein-coding	0.060000	0.651741	
mm_55783.1	chr6	82052516	82052716	-	1	NA	NA	NA	10988	NM_145570	232146	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	0.000000	0.477612	
mm_5202.1	chr1	13374304	13374504	-	1	NA	NA	NA	-321	NM_008678	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.035000	0.606965	
mm_95896.1	chr11	58190121	58190321	+	1	NA	NA	NA	6378	NM_001135115	631323	Mm.394103	NM_001135115		Gm12250	Irgb10|OTTMUSG00000005723	predicted gene 12250	protein-coding	0.010000	0.507463	
mm_86521.1	chr10	7753469	7753669	+	1	NA	NA	NA	27348	NM_145418	215751	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	0.010000	0.402985	
mm_74476.1	chr8	4259170	4259370	-	1	NA	NA	NA	4	NM_183315	330695	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	0.090000	0.736318	
mm_84344.1	chr9	64230675	64230875	-	1	NA	NA	NA	-4426	NM_033607	93841	Mm.390180	NM_033607	ENSMUSG00000035337	Uchl4	-	ubiquitin carboxyl-terminal esterase L4	protein-coding	0.010000	0.412935	
mm_69376.1	chr7	131146214	131146414	-	1	NA	NA	NA	-31	NM_173409	233918	Mm.78341	NM_173409	ENSMUSG00000013668	4933402N03Rik	4930412O05	RIKEN cDNA 4933402N03 gene	protein-coding	0.010000	0.452736	83(CAGTATAAAAGC,-,0.00)
mm_137337.1	chr17	25133310	25133510	+	1	NA	NA	NA	19	NM_011930	26373	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.085000	0.606965	
mm_41704.1	chr5	101720680	101720880	+	1	NA	NA	NA	-44350	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.010000	0.542289	
mm_120775.1	chr14	74451436	74451636	+	1	NA	NA	NA	96009	NR_046059	74425	Mm.399498	NR_046059		4933402J15Rik	-	RIKEN cDNA 4933402J15 gene	ncRNA	0.005000	0.457711	
mm_12559.1	chr2	72476119	72476319	+	1	NA	NA	NA	0	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.130000	0.721393	
mm_59267.1	chr7	24899028	24899228	+	1	NA	NA	NA	1617	NM_007655	12518	Mm.1355	NM_007655	ENSMUSG00000003379	Cd79a	Ig-alpha|Iga|Igalpha|Ly-54|Ly54|mb-1	CD79A antigen (immunoglobulin-associated alpha)	protein-coding	0.025000	0.582090	
mm_73935.1	chr8	120002631	120002831	+	1	NA	NA	NA	10293	NM_001310635	78892	Mm.264680	NM_030209	ENSMUSG00000031825	Crispld2	1810049K24Rik|Lcrisp2|Lgl1|coffeecrisp	cysteine-rich secretory protein LCCL domain containing 2	protein-coding	0.030000	0.552239	
mm_58015.1	chr6	136558627	136558827	-	1	NA	NA	NA	39876	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.015000	0.422886	
mm_158609.1	chrX	152368610	152368810	-	1	NA	NA	NA	-6	NR_132633	70771	Mm.158445	NM_027543	ENSMUSG00000056679	Gpr173	3230401K02Rik|Sreb3	G-protein coupled receptor 173	protein-coding	0.025000	0.621891	
mm_92703.1	chr10	80713958	80714158	-	1	NA	NA	NA	11365	NM_027829	71564	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.045000	0.582090	
mm_109914.1	chr12	8482007	8482207	-	1	NA	NA	NA	17878	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.025000	0.597015	
mm_73441.1	chr8	106201232	106201432	+	1	NA	NA	NA	9601	NM_001007567	66432	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	0.005000	0.402985	
mm_95055.1	chr11	32397926	32398126	+	1	NA	NA	NA	50215	NM_177364	268396	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.000000	0.437811	3(CCATTTATGTGC,+,0.00)
mm_79493.1	chr9	57076303	57076503	+	1	NA	NA	NA	27	NM_011378	20466	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	0.080000	0.681592	
mm_83777.1	chr9	52141538	52141738	-	1	NA	NA	NA	26015	NR_105750	102465150		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	0.010000	0.353234	-16(GTGCATAAAAGG,-,0.00)
mm_29893.1	chr3	131303084	131303284	-	1	NA	NA	NA	43	NM_027816	71519	Mm.473179	NM_027816	ENSMUSG00000027983	Cyp2u1	8430436A10Rik	cytochrome P450, family 2, subfamily u, polypeptide 1	protein-coding	0.105000	0.691542	
mm_14781.1	chr2	145851022	145851222	+	1	NA	NA	NA	-52119	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.000000	0.482587	
mm_48501.1	chr5	142815737	142815937	-	1	NA	NA	NA	1550	NM_178242	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.045000	0.437811	-84(GGCCCTAAAAAG,-,0.00)
mm_72824.1	chr8	88199358	88199558	+	1	NA	NA	NA	245	NM_001164498	214627	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0.170000	0.825871	
mm_2879.1	chr1	131827976	131828176	+	1	NA	NA	NA	64	NM_173865	98396	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	0.070000	0.641791	
mm_103677.1	chr11	79243306	79243506	-	1	NA	NA	NA	-382	NM_001042565	78889	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.030000	0.472637	61(TCCTTTAAAAGT,-,0.00),62(CCTTTAAAAGTA,+,0.00)
mm_5179.1	chr1	12814353	12814553	-	1	NA	NA	NA	95908	NM_172294	240725	Mm.45563	NM_172294	ENSMUSG00000016918	Sulf1	AI467640|AW121680|mKIAA1077	sulfatase 1	protein-coding	0.005000	0.482587	
mm_15072.1	chr2	153108416	153108616	+	1	NA	NA	NA	48	NM_010407	15162	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.080000	0.681592	-92(GGCTCTTAGAGG,-,0.00),-91(GCTCTTAGAGGG,+,0.00)
mm_116724.1	chr13	51703021	51703221	-	1	NA	NA	NA	51413	NM_029279	75420	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.030000	0.587065	
mm_31302.1	chr4	46031280	46031480	+	1	NA	NA	NA	-7842	NM_021883	21916	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0.005000	0.333333	
mm_133924.1	chr16	97997238	97997438	+	1	NA	NA	NA	-9	NR_130962	245305	Mm.148033	NR_130962		B230307C23Rik	EG245305|OTTMUSG00000028475	RIKEN cDNA B230307C23 gene	ncRNA	0.060000	0.567164	
mm_94186.1	chr10	128960526	128960726	-	1	NA	NA	NA	362	NM_027853	71664	Mm.337232	NM_027853	ENSMUSG00000025347	Mettl7b	0610006F02Rik|AI266817	methyltransferase like 7B	protein-coding	0.030000	0.562189	
mm_170816.1	chr2	176289783	176289983	+	1	NA	NA	NA	-60	NR_040256	626877	Mm.490744	NR_040256		Gm14405	OTTMUSG00000016573	predicted gene 14405	pseudo	0.020000	0.477612	
mm_90581.1	chr10	128268549	128268749	+	1	NA	NA	NA	652	NM_133997	103161	Mm.26513	NM_133997	ENSMUSG00000047631	Apof	AI255964	apolipoprotein F	protein-coding	0.005000	0.527363	
mm_111092.1	chr12	80436709	80436909	-	1	NA	NA	NA	-208	NM_177267	320808	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	0.130000	0.736318	
mm_131084.1	chr16	4762524	4762724	+	1	NA	NA	NA	21011	NM_010443	15369	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.010000	0.502488	29(CACCAGAAAAGG,-,0.00)
mm_84305.1	chr9	63602379	63602579	-	1	NA	NA	NA	14	NM_030068	78250	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	0.095000	0.696517	
mm_97047.1	chr11	72435447	72435647	+	1	NA	NA	NA	21	NM_027819	71522	Mm.23336	NM_027819	ENSMUSG00000040471	Ggt6	9030405D14Rik|AI427679|AW490214	gamma-glutamyltransferase 6	protein-coding	0.020000	0.606965	
mm_90539.1	chr10	128091048	128091248	+	1	NA	NA	NA	-1635	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.015000	0.557214	
mm_28251.1	chr3	88512512	88512712	-	1	NA	NA	NA	-9260	NM_001002011	16905	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.010000	0.542289	
mm_32907.1	chr4	119120337	119120537	+	1	NA	NA	NA	11692	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.025000	0.542289	71(CCATATATACCA,+,0.00)
mm_65430.1	chr7	25367560	25367760	-	1	NA	NA	NA	2064	NM_001081375	72383	Mm.34382	NM_028219	ENSMUSG00000063651	Cnfn	2210418J09Rik	cornifelin	protein-coding	0.020000	0.527363	
mm_6987.1	chr1	86357148	86357348	-	1	NA	NA	NA	-921	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.015000	0.502488	
mm_159412.1	chr3	103913781	103913981	+	1	NA	NA	NA	-239	NM_172684	229675	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0.025000	0.452736	
mm_5856.1	chr1	53548781	53548981	-	1	NA	NA	NA	157903	NM_001252070	627872	Mm.184692	NM_001252070	ENSMUSG00000096141	Dnah7a	Dnahc7|Dnahc7a|Gm992	dynein, axonemal, heavy chain 7A	protein-coding	0.005000	0.452736	
mm_33171.1	chr4	126031706	126031906	+	1	NA	NA	NA	7147	NM_001252651	12986	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.005000	0.572139	
mm_162595.1	chr1	182564917	182565117	+	1	NA	NA	NA	10	NM_130890	170725	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	0.010000	0.597015	-48(CTGCCTTAAAGG,-,0.00),-47(TGCCTTAAAGGG,-,0.00),-46(GCCTTAAAGGGC,+,0.00),-45(CCTTAAAGGGCA,+,0.00)
mm_114794.1	chr13	89584434	89584634	+	1	NA	NA	NA	43898	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.020000	0.402985	
mm_138634.1	chr17	35861188	35861388	+	1	NA	NA	NA	-30	NM_134122	106582	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding	0.105000	0.711443	
mm_155472.1	chrX	73640067	73640267	+	1	NA	NA	NA	726	NM_029352	75590	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	0.060000	0.636816	
mm_31093.1	chr4	41755393	41755593	+	1	NA	NA	NA	265	NM_016658	14430	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	0.070000	0.621891	
mm_45641.1	chr5	76905385	76905585	-	1	NA	NA	NA	29	NM_173765	231326	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	0.130000	0.701493	
mm_134477.1	chr16	18588795	18588995	-	1	NA	NA	NA	1776	NM_001285472	21380	Mm.295194	NM_011532	ENSMUSG00000009097	Tbx1	-	T-box 1	protein-coding	0.120000	0.741294	
mm_88811.1	chr10	80780711	80780911	+	1	NA	NA	NA	17815	NM_023900	78670	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.010000	0.452736	
mm_78313.1	chr9	23223515	23223715	+	1	NA	NA	NA	539	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.105000	0.691542	
mm_19665.1	chr2	103283685	103283885	-	1	NA	NA	NA	19411	NM_007914	13661	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding	0.005000	0.368159	
mm_170321.1	chr18	4196952	4197152	-	1	NA	NA	NA	31220	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.005000	0.462687	
mm_108247.1	chr12	78226503	78226703	+	1	NA	NA	NA	-52	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.155000	0.800995	
mm_81073.1	chr9	106212089	106212289	+	1	NA	NA	NA	9081	NM_011876	23999	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	0.040000	0.616915	-77(CCTCATATAGCT,+,0.00)
mm_52078.1	chr6	97828144	97828344	+	1	NA	NA	NA	21186	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.432836	
mm_126187.1	chr15	78615839	78616039	+	1	NA	NA	NA	18892	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.005000	0.472637	
mm_109272.1	chr12	109545689	109545889	+	1	NA	NA	NA	391	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.000000	0.328358	-9(GGCCTTTTAAAC,-,0.00),-7(CCTTTTAAACCA,+,0.00)
mm_126557.1	chr15	82147490	82147690	+	1	NA	NA	NA	321	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.145000	0.776119	
mm_87442.1	chr10	51481537	51481737	+	1	NA	NA	NA	1025	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.005000	0.477612	
mm_28534.1	chr3	92708974	92709174	-	1	NA	NA	NA	0	NM_026811	68694	Mm.290624	NM_026811	ENSMUSG00000068889	Lce1e	1110031B11Rik|AI507275	late cornified envelope 1E	protein-coding	0.000000	0.502488	
mm_165404.1	chr2	138278955	138279155	+	1	NA	NA	NA	562	NM_145534	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.040000	0.502488	
mm_113086.1	chr13	23870196	23870396	+	1	NA	NA	NA	23	NM_001170638	20504	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	0.015000	0.402985	
mm_165940.1	chr4	77310630	77310830	+	1	NA	NA	NA	901165	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.005000	0.597015	
mm_16652.1	chr2	6542637	6542837	-	1	NA	NA	NA	178925	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.010000	0.363184	-83(GACTTTTAAAAC,-,0.00),-81(CTTTTAAAACTC,+,0.00)
mm_68141.1	chr7	102240004	102240204	-	1	NA	NA	NA	10014	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.055000	0.547264	
mm_127929.1	chr15	10470409	10470609	-	1	NA	NA	NA	7	NM_030046	78244	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	0.190000	0.850746	
mm_36411.1	chr4	78069390	78069590	-	1	NA	NA	NA	142405	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.005000	0.378109	
mm_110097.1	chr12	25189567	25189767	-	1	NA	NA	NA	60493	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.035000	0.572139	
mm_171290.1	chr3	90086472	90086672	-	1	NA	NA	NA	7051	NM_001293749	59069	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0.030000	0.616915	
mm_80975.1	chr9	103181309	103181509	+	1	NA	NA	NA	20656	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.005000	0.417910	
mm_97907.1	chr11	83439860	83440060	+	1	NA	NA	NA	2266	NM_025492	66330	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	0.045000	0.582090	
mm_129593.1	chr15	79804379	79804579	-	1	NA	NA	NA	230	NM_030689	73340	Mm.38438	NM_030689	ENSMUSG00000022421	Nptxr	1200009K17Rik|1700036C17Rik|5730406O18Rik|AI452369|AI785356|D15Bwg0580e|NPR|Npcd	neuronal pentraxin receptor	protein-coding	0.150000	0.771144	
mm_130635.1	chr15	100480486	100480686	-	1	NA	NA	NA	11552	NM_134093	68614	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	0.000000	0.393035	
mm_171864.1	chr5	23434321	23434521	+	1	NA	NA	NA	-8	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.150000	0.761194	
mm_157718.1	chrX	70344180	70344380	-	1	NA	NA	NA	20805	NM_010498	15931	Mm.233083	NM_010498	ENSMUSG00000035847	Ids	AW214631	iduronate 2-sulfatase	protein-coding	0.000000	0.472637	
mm_165582.1	chr3	28956275	28956475	+	1	NA	NA	NA	63758	NM_001033479	385263	Mm.60893	NM_001033479	ENSMUSG00000074655	Gm1527	Gm1136	predicted gene 1527	protein-coding	0.000000	0.353234	
mm_26620.1	chr3	152396583	152396783	+	1	NA	NA	NA	-1	NM_001287139	108946	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.105000	0.681592	
mm_96133.1	chr11	60878268	60878468	+	1	NA	NA	NA	670	NM_173453	216821	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	0.125000	0.736318	-34(GCCCCTATAAAG,-,0.00),-32(CCCTATAAAGCA,+,0.00)
mm_38349.1	chr4	137769915	137770115	-	1	NA	NA	NA	-3540	NM_001287172	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.015000	0.606965	
mm_100928.1	chr11	6475799	6475999	-	1	NA	NA	NA	177	NM_011221	19291	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0.220000	0.870647	
mm_122647.1	chr14	51905711	51905911	-	1	NA	NA	NA	7677	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.005000	0.492537	
mm_93610.1	chr10	117238478	117238678	-	1	NA	NA	NA	103	NM_029906	77397	Mm.118350	NM_029906	ENSMUSG00000020177	9530003J23Rik	Lyzf1	RIKEN cDNA 9530003J23 gene	protein-coding	0.025000	0.532338	-59(GCTTAAATACTG,+,0.00)
mm_54611.1	chr6	38354020	38354220	-	1	NA	NA	NA	483	NM_028864	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.065000	0.606965	
mm_78000.1	chr9	8901442	8901642	+	1	NA	NA	NA	1709	NM_008829	18667	Mm.12798	NM_008829	ENSMUSG00000031870	Pgr	9930019P03Rik|BB114106|ENSMUSG00000074510|NR3C3|PR|PR-A|PR-B	progesterone receptor	protein-coding	0.075000	0.671642	
mm_82096.1	chr9	123056492	123056692	+	1	NA	NA	NA	21851	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.035000	0.487562	
mm_83002.1	chr9	36726532	36726732	-	1	NA	NA	NA	26	NM_007691	12649	Mm.16753	NM_007691	ENSMUSG00000032113	Chek1	C85740|Chk1|rad27	checkpoint kinase 1	protein-coding	0.075000	0.592040	
mm_99902.1	chr11	109662525	109662725	+	1	NA	NA	NA	11704	NM_001313976	19084	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.005000	0.298507	
mm_64027.1	chr7	140769007	140769207	+	1	NA	NA	NA	5275	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.020000	0.462687	
mm_123096.1	chr14	55788676	55788876	-	1	NA	NA	NA	81	NM_001164107	56532	Mm.46612	NM_019955	ENSMUSG00000022221	Ripk3	2610528K09Rik|AW107945|Rip3	receptor-interacting serine-threonine kinase 3	protein-coding	0.060000	0.577114	
mm_13563.1	chr2	112265793	112265993	+	1	NA	NA	NA	-421	NM_133649	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.130000	0.706468	
mm_172002.1	chr6	107140546	107140746	+	1	NA	NA	NA	-340559	NM_175357	58799	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.015000	0.492537	
mm_107914.1	chr12	71015840	71016040	+	1	NA	NA	NA	-27	NM_001081195	238247	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|MmRBBP1|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.045000	0.497512	
mm_136483.1	chr16	96067910	96068110	-	1	NA	NA	NA	14418	NM_001103179	93871	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0.000000	0.273632	
mm_70907.1	chr8	25649306	25649506	+	1	NA	NA	NA	8829	NM_001081269	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.005000	0.447761	
mm_162242.1	chrX	155147977	155148177	-	1	NA	NA	NA	-228	NM_001081671	73347	Mm.63848	NM_001081671	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	0.005000	0.338308	8(CCTTTAATACTG,+,0.00)
mm_166361.1	chr5	123344831	123345031	+	1	NA	NA	NA	483	NM_029850	77045	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0.155000	0.796020	
mm_55737.1	chr6	77476502	77476702	-	1	NA	NA	NA	-94127	NR_045141	70753	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	0.000000	0.363184	
mm_19712.1	chr2	103944960	103945160	-	1	NA	NA	NA	-12935	NM_001142337	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.000000	0.497512	
mm_113807.1	chr13	46502027	46502227	+	1	NA	NA	NA	224	NM_026056	67252	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding	0.100000	0.706468	
mm_123534.1	chr14	66805154	66805354	-	1	NA	NA	NA	63346	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.005000	0.542289	-7(TTTTTTAAAGAG,+,0.00)
mm_8174.1	chr1	137969128	137969328	-	1	NA	NA	NA	2589	NR_029820	723890		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA	0.010000	0.398010	
mm_14442.1	chr2	130910734	130910934	+	1	NA	NA	NA	4339	NM_009730	11990	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	0.000000	0.323383	
mm_80484.1	chr9	78230585	78230785	+	1	NA	NA	NA	16	NM_008181	14857	Mm.467426	NM_008181	ENSMUSG00000074183	Gsta1	Gst2-1|OTTMUSG00000031890	glutathione S-transferase, alpha 1 (Ya)	protein-coding	0.005000	0.532338	
mm_14076.1	chr2	124089890	124090090	+	1	NA	NA	NA	21	NM_001290997	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.080000	0.696517	
mm_116367.1	chr13	40730912	40731112	-	1	NA	NA	NA	-555	NM_001122948	21418	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.050000	0.631841	
mm_121076.1	chr14	98905035	98905235	+	1	NA	NA	NA	141001	NM_175245	76789	Mm.38912	NM_175245	ENSMUSG00000033186	Mzt1	2410129H14Rik|AI120158|Mozart1	mitotic spindle organizing protein 1	protein-coding	0.020000	0.457711	
mm_12341.1	chr2	69722982	69723182	+	1	NA	NA	NA	-6	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.135000	0.786070	
mm_64377.1	chr7	142460760	142460960	+	1	NA	NA	NA	48	NM_001136071	16985	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.030000	0.592040	
mm_120113.1	chr14	59478862	59479062	+	1	NA	NA	NA	37981	NM_026908	69008	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding	0.025000	0.442786	
mm_77064.1	chr8	109752158	109752358	-	1	NA	NA	NA	-14519	NM_001080930	52335	Mm.276770	NM_001080930	ENSMUSG00000069895	Atxn1l	AW558552|Boat|C330011L24Rik|D6Mgi37|D8Ertd587e|ENSMUSG00000069895	ataxin 1-like	protein-coding	0.040000	0.522388	
mm_8150.1	chr1	136580485	136580685	-	1	NA	NA	NA	-44316	NM_177643	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.015000	0.432836	-78(CTGTTTATAAGA,-,0.00)
mm_75882.1	chr8	70792322	70792522	-	1	NA	NA	NA	11	NM_199308	546071	Mm.250731	NM_199308	ENSMUSG00000031833	Mast3	BC024265|mKIAA0561	microtubule associated serine/threonine kinase 3	protein-coding	0.115000	0.736318	
mm_80392.1	chr9	75775267	75775467	+	1	NA	NA	NA	2	NM_007555	12160	Mm.428950	NM_007555	ENSMUSG00000032179	Bmp5	AU023399|se	bone morphogenetic protein 5	protein-coding	0.000000	0.437811	
mm_53162.1	chr6	125321298	125321498	+	1	NA	NA	NA	58	NM_011324	20276	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0.025000	0.631841	
mm_41161.1	chr5	87929860	87930060	+	1	NA	NA	NA	4327	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.010000	0.462687	
mm_63003.1	chr7	120842774	120842974	+	1	NA	NA	NA	43	NM_007908	13631	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.095000	0.751244	
mm_68957.1	chr7	126566095	126566295	-	1	NA	NA	NA	171	NM_146200	56347	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.130000	0.691542	
mm_38391.1	chr4	138819145	138819345	-	1	NA	NA	NA	12	NM_011110	18784	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	0.015000	0.621891	
mm_30242.1	chr3	146499662	146499862	-	1	NA	NA	NA	-9	NM_027617	70951	Mm.383235	NM_027617	ENSMUSG00000028188	Spata1	4921536I21Rik|AV266943|SP-2	spermatogenesis associated 1	protein-coding	0.175000	0.800995	
mm_145384.1	chr18	57132958	57133158	+	1	NA	NA	NA	-32	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.055000	0.626866	
mm_39433.1	chr5	16553710	16553910	+	1	NA	NA	NA	-91	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.025000	0.487562	
mm_120619.1	chr14	70443424	70443624	+	1	NA	NA	NA	14	NR_029802	723838		NR_029802	ENSMUSG00000065528	Mir320	Mirn320|mir-320|mmu-mir-320	microRNA 320	ncRNA	0.070000	0.611940	
mm_104000.1	chr11	84870718	84870918	-	1	NA	NA	NA	-80	NM_153144	217039	Mm.356653	NM_153144	ENSMUSG00000020530	Ggnbp2	AI451896|C75939|D330017P12Rik|DIF-3|Zfp403	gametogenetin binding protein 2	protein-coding	0.125000	0.736318	
mm_109831.1	chr12	4038715	4038915	-	1	NA	NA	NA	100	NM_001082483	668212	Mm.210266	NM_001082483	ENSMUSG00000020658	Efr3b	AI852640|C030014M07Rik|mKIAA0953	EFR3 homolog B	protein-coding	0.140000	0.771144	
mm_36204.1	chr4	62360466	62360666	-	1	NA	NA	NA	-18	NM_001045528	338355	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.055000	0.621891	
mm_8513.1	chr1	154726594	154726794	-	1	NA	NA	NA	-774	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.085000	0.646766	
mm_80655.1	chr9	90054357	90054557	+	1	NA	NA	NA	190	NM_001312649	13036	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.030000	0.631841	
mm_47131.1	chr5	120472724	120472924	-	1	NA	NA	NA	-61	NM_133902	257635	Mm.5162	NM_133902	ENSMUSG00000029596	Sdsl	4432411H13Rik|AI504310|SDH1|SDS-RS1|TDH	serine dehydratase-like	protein-coding	0.040000	0.572139	
mm_119211.1	chr14	32991318	32991518	+	1	NA	NA	NA	36	NM_026253	67580	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0.015000	0.487562	
mm_16426.1	chr2	180332296	180332496	+	1	NA	NA	NA	-461	NR_045877	100036520	Mm.98950	NR_045877	ENSMUSG00000056061	Gata5os	Gm14318|OTTMUSG00000016300	GATA binding protein 5, opposite strand	ncRNA	0.050000	0.597015	
mm_31301.1	chr4	46000361	46000561	+	1	NA	NA	NA	28164	NM_146142	100121	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.000000	0.422886	
mm_6999.1	chr1	86389299	86389499	-	1	NA	NA	NA	-38	NM_001319227	14767	Mm.389159	NM_010341	ENSMUSG00000026237	Nmur1	FM-3|Gpr66|NMU-R1|NMU1R|NmU-R	neuromedin U receptor 1	protein-coding	0.050000	0.626866	
mm_6695.1	chr1	80755715	80755915	-	1	NA	NA	NA	2738	NM_175291	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.025000	0.398010	
mm_60323.1	chr7	44225341	44225541	+	1	NA	NA	NA	81	NM_001320331	16612	Mm.142722	NM_010639	ENSMUSG00000063903	Klk1	0610007D04Rik|KAL-B|Kal|Klk1b6|Klk6|mGk-6	kallikrein 1	protein-coding	0.005000	0.582090	-35(GGGTTTTTAAAG,-,0.00),-34(GGTTTTTAAAGG,-,0.00),-33(GTTTTTAAAGGC,+,0.00)
mm_56640.1	chr6	113307677	113307877	-	1	NA	NA	NA	640	NM_001282126	78783	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.055000	0.597015	
mm_999.1	chr1	58713352	58713552	+	1	NA	NA	NA	166	NM_207653	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.065000	0.601990	
mm_167276.1	chr8	34152248	34152448	+	1	NA	NA	NA	-2215	NM_026432	67887	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	0.035000	0.457711	-53(CACTTTTAAAAG,-,0.00),-51(CTTTTAAAAGTA,+,0.00)
mm_4661.1	chr1	180365299	180365499	+	1	NA	NA	NA	-34850	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.065000	0.636816	
mm_94850.1	chr11	23771491	23771691	+	1	NA	NA	NA	-621	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.075000	0.542289	
mm_98463.1	chr11	94948276	94948476	+	1	NA	NA	NA	12152	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.020000	0.606965	
mm_18041.1	chr2	39005036	39005236	-	1	NA	NA	NA	-5	NM_025592	66489	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0.125000	0.691542	
mm_157301.1	chrX	20928678	20928878	-	1	NA	NA	NA	2777	NM_008823	18636	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	0.010000	0.557214	
mm_164130.1	chr15	41751390	41751590	+	1	NA	NA	NA	-37544	NM_001130165	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.020000	0.497512	
mm_143283.1	chr17	65777471	65777671	-	1	NA	NA	NA	-4819	NM_133685	106572	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.010000	0.547264	
mm_122284.1	chr14	34503145	34503345	-	1	NA	NA	NA	-699	NM_009758	12166	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK3|AU045487|BMPR-IA|Bmpr	bone morphogenetic protein receptor, type 1A	protein-coding	0.095000	0.651741	
mm_27731.1	chr3	69044630	69044830	-	1	NA	NA	NA	12	NM_025863	66949	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.175000	0.791045	
mm_79784.1	chr9	63077096	63077296	+	1	NA	NA	NA	69784	NM_172446	207667	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.015000	0.507463	-32(GGCTATATAAAG,-,0.00),-30(CTATATAAAGGG,+,0.00),-30(CTATATAAAGGG,-,0.00)
mm_77628.1	chr8	124020845	124021045	-	1	NA	NA	NA	364	NM_133966	102162	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	0.170000	0.786070	
mm_66426.1	chr7	44625605	44625805	-	1	NA	NA	NA	34819	NM_001290682	16504	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.020000	0.587065	
mm_43833.1	chr5	142972280	142972480	+	1	NA	NA	NA	12025	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.015000	0.587065	
mm_128104.1	chr15	27968164	27968364	-	1	NA	NA	NA	57584	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.030000	0.517413	
mm_141725.1	chr17	34115485	34115685	-	1	NA	NA	NA	4315	NR_037970	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.005000	0.477612	
mm_22249.1	chr2	174849890	174850090	-	1	NA	NA	NA	89371	NM_007903	13616	Mm.9478	NM_007903	ENSMUSG00000027524	Edn3	ET-3|PPET3|ls|tmgc48	endothelin 3	protein-coding	0.000000	0.343284	
mm_111452.1	chr12	98385764	98385964	-	1	NA	NA	NA	117229	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.000000	0.437811	
mm_13143.1	chr2	92185322	92185522	+	1	NA	NA	NA	-61	NM_001109691	192285	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0.100000	0.686567	
mm_14230.1	chr2	127587139	127587339	+	1	NA	NA	NA	-187	NM_029963	77721	Mm.274601	NM_029963	ENSMUSG00000027374	Mrps5	1620401I16Rik|AI850294	mitochondrial ribosomal protein S5	protein-coding	0.070000	0.646766	
mm_148124.1	chr18	75377446	75377646	-	1	NA	NA	NA	10181	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.020000	0.472637	
mm_30702.1	chr4	11760912	11761112	+	1	NA	NA	NA	2855	NM_019753	12557	Mm.33402	NM_019753	ENSMUSG00000028217	Cdh17	HPT-1|HPT-1/LI	cadherin 17	protein-coding	0.000000	0.328358	
mm_69276.1	chr7	127946628	127946828	-	1	NA	NA	NA	-3	NM_001319147	77613	Mm.334253	NM_001081374	ENSMUSG00000070371	Prss36	C330007D15Rik	protease, serine 36	protein-coding	0.025000	0.587065	
mm_81549.1	chr9	110305107	110305307	+	1	NA	NA	NA	15	NM_001081381	72341	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	0.085000	0.552239	
mm_25587.1	chr3	116886038	116886238	+	1	NA	NA	NA	24458	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.015000	0.398010	
mm_147180.1	chr18	36770090	36770290	-	1	NA	NA	NA	-3976	NM_173383	213236	Mm.234464	NM_173383	ENSMUSG00000044595	Dnd1	BC034897|RBMS4|Ter	DND microRNA-mediated repression inhibitor 1	protein-coding	0.025000	0.567164	
mm_31814.1	chr4	66827651	66827851	+	1	NA	NA	NA	200	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.010000	0.522388	
mm_41221.1	chr5	88583902	88584102	+	1	NA	NA	NA	489	NM_027530	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.005000	0.318408	10(ATCCCTAAAAGC,-,0.00),23(TTATTTAAAAGC,-,0.00)
mm_117240.1	chr13	64312611	64312811	-	1	NA	NA	NA	-1	NM_025370	66129	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	0.120000	0.761194	
mm_141213.1	chr17	27133815	27134015	-	1	NA	NA	NA	-24	NM_026063	67267	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	0.085000	0.676617	
mm_153841.1	chr19	46328342	46328542	-	1	NA	NA	NA	258	NM_133694	68431	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	0.075000	0.601990	
mm_45417.1	chr5	66492033	66492233	-	1	NA	NA	NA	126684	NM_009686	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.030000	0.497512	
mm_141806.1	chr17	34549240	34549440	-	1	NA	NA	NA	-14955	NM_010929	18132	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	0.010000	0.472637	
mm_71088.1	chr8	34807514	34807714	+	1	NA	NA	NA	4	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.035000	0.616915	
mm_57285.1	chr6	124414922	124415122	-	1	NA	NA	NA	45	NM_008995	19305	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1R|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0.135000	0.786070	-86(GCCCCTTTAAGG,-,0.00),-85(CCCCTTTAAGGC,-,0.00),-84(CCCTTTAAGGCC,+,0.00),-83(CCTTTAAGGCCG,+,0.00)
mm_111062.1	chr12	80113131	80113331	-	1	NA	NA	NA	-218	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.055000	0.512438	
mm_41989.1	chr5	107725837	107726037	+	1	NA	NA	NA	-132	NM_001267621	14581	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.060000	0.626866	
mm_85548.1	chr9	106685564	106685764	-	1	NA	NA	NA	152	NM_011573	21767	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.100000	0.731343	
mm_72939.1	chr8	91387257	91387457	+	1	NA	NA	NA	73832	NM_011936	26383	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	0.010000	0.343284	
mm_137369.1	chr17	25471610	25471810	+	1	NA	NA	NA	120	NM_027951	71840	Mm.282330	NM_027951	ENSMUSG00000024175	Tekt4	1700010L19Rik	tektin 4	protein-coding	0.035000	0.572139	
mm_12568.1	chr2	72979412	72979612	+	1	NA	NA	NA	80	NR_045269	100503849	Mm.389285	NM_183265		Sp3os	1700011J10Rik	trans-acting transcription factor 3, opposite strand	ncRNA	0.130000	0.736318	
mm_86364.1	chr9	123791971	123792171	-	1	NA	NA	NA	-14406	NM_030712	80901	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.010000	0.537313	
mm_43724.1	chr5	139543797	139543997	+	1	NA	NA	NA	-1	NM_013702	22255	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	0.130000	0.666667	
mm_170019.1	chr1	7190133	7190333	+	1	NA	NA	NA	101313	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.025000	0.422886	
mm_116217.1	chr13	32806902	32807102	-	1	NA	NA	NA	4972	NM_030215	78903	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	0.015000	0.587065	
mm_47751.1	chr5	130955626	130955826	-	1	NA	NA	NA	351796	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.005000	0.388060	
mm_42283.1	chr5	114289152	114289352	+	1	NA	NA	NA	-15491	NM_148935	116810	Mm.17709	NM_148935	ENSMUSG00000042002	Foxn4	-	forkhead box N4	protein-coding	0.060000	0.587065	
mm_34557.1	chr4	149634601	149634801	+	1	NA	NA	NA	20866	NR_105990	102465983		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.040000	0.616915	
mm_5957.1	chr1	56971602	56971802	-	1	NA	NA	NA	233	NR_024325	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0.075000	0.587065	
mm_111460.1	chr12	98419954	98420154	-	1	NA	NA	NA	-103790	NR_136759	105245437	Mm.446375	NR_136759		Gm40893	-	predicted gene, 40893	ncRNA	0.020000	0.517413	
mm_25905.1	chr3	131112374	131112574	+	1	NA	NA	NA	-317	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.125000	0.691542	
mm_34031.1	chr4	138096726	138096926	+	1	NA	NA	NA	41692	NR_126429	73563	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	0.035000	0.562189	
mm_92263.1	chr10	71115058	71115258	-	1	NA	NA	NA	44532	NM_031397	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	BicC family RNA binding protein 1	protein-coding	0.015000	0.457711	
mm_81650.1	chr9	110953673	110953873	+	1	NA	NA	NA	2228	NM_028838	74249	Mm.307615	NM_028838	ENSMUSG00000032495	Lrrc2	2400002D05Rik|4933431K03Rik	leucine rich repeat containing 2	protein-coding	0.055000	0.517413	
mm_21753.1	chr2	164837327	164837527	-	1	NA	NA	NA	3654	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.035000	0.611940	
mm_58457.1	chr7	3332713	3332913	+	1	NA	NA	NA	-3772	NM_133189	81904	Mm.214994	NM_133189	ENSMUSG00000069806	Cacng7	-	calcium channel, voltage-dependent, gamma subunit 7	protein-coding	0.080000	0.736318	
mm_24397.1	chr3	90293267	90293467	+	1	NA	NA	NA	23218	NR_105979	102465612		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.100000	0.751244	
mm_67412.1	chr7	80113890	80114090	-	1	NA	NA	NA	1360	NM_173011	269951	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.010000	0.542289	
mm_147321.1	chr18	42249367	42249567	-	1	NA	NA	NA	12604	NM_134137	107045	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	0.005000	0.378109	
mm_159883.1	chr6	21216158	21216358	+	1	NA	NA	NA	149	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.020000	0.552239	
mm_15352.1	chr2	156202371	156202571	+	1	NA	NA	NA	5824	NM_172674	228829	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	0.000000	0.363184	
mm_102458.1	chr11	59839654	59839854	-	1	NA	NA	NA	13	NM_011991	26572	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	0.075000	0.646766	
mm_117764.1	chr13	96132606	96132806	-	1	NA	NA	NA	-129	NM_029210	75209	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	0.110000	0.711443	
mm_111620.1	chr12	102413461	102413661	-	1	NA	NA	NA	26252	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.045000	0.512438	
mm_109284.1	chr12	109550811	109551011	+	1	NA	NA	NA	5513	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.010000	0.457711	
mm_141436.1	chr17	29549493	29549693	-	1	NA	NA	NA	0	NM_001162901	71138	Mm.158581	NM_001162901	ENSMUSG00000079580	Tmem217	4933413N12Rik|EG622644	transmembrane protein 217	protein-coding	0.040000	0.616915	
mm_11269.1	chr2	30061740	30061940	+	1	NA	NA	NA	-156	NM_023871	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.060000	0.666667	
mm_64527.1	chr7	143978336	143978536	+	1	NA	NA	NA	-30818	NR_037292	100526562		NR_037292	ENSMUSG00000093221	Mir3105	mmu-mir-3105	microRNA 3105	ncRNA	0.055000	0.641791	
mm_61129.1	chr7	55852981	55853181	+	1	NA	NA	NA	11010	NM_001164661	20430	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.015000	0.422886	
mm_120763.1	chr14	73368291	73368491	+	1	NA	NA	NA	16880	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.045000	0.537313	
mm_101936.1	chr11	50207361	50207561	-	1	NA	NA	NA	3359	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.040000	0.611940	
mm_40084.1	chr5	34525733	34525933	+	1	NA	NA	NA	49	NM_011893	24055	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.080000	0.711443	
mm_53223.1	chr6	126990463	126990663	+	1	NA	NA	NA	-24979	NM_010204	14177	Mm.3403	NM_010204	ENSMUSG00000000183	Fgf6	Fgf-6|HSTF-2	fibroblast growth factor 6	protein-coding	0.025000	0.512438	
mm_15246.1	chr2	154672332	154672532	+	1	NA	NA	NA	15406	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.020000	0.412935	
mm_71721.1	chr8	61963549	61963749	+	1	NA	NA	NA	35562	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.005000	0.353234	-48(CATCTTAAAAGG,-,0.00)
mm_116799.1	chr13	53639131	53639331	-	1	NA	NA	NA	-30	NR_131079	77398	Mm.174307	NR_131079		9530014B07Rik	-	RIKEN cDNA 9530014B07 gene	ncRNA	0.025000	0.532338	
mm_72664.1	chr8	84872670	84872870	+	1	NA	NA	NA	512	NM_001168244	71846	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	0.080000	0.686567	
mm_85800.1	chr9	110117312	110117512	-	1	NA	NA	NA	204	NM_001252682	72831	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	0.095000	0.636816	
mm_72065.1	chr8	71470313	71470513	+	1	NA	NA	NA	1219	NR_122114	66498	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	0.000000	0.567164	
mm_65466.1	chr7	25476392	25476592	-	1	NA	NA	NA	1133	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.025000	0.447761	
mm_120545.1	chr14	67299246	67299446	+	1	NA	NA	NA	15365	NM_001037931	628416	Mm.390723	NM_001037931		Gm6878	EG628416	predicted gene 6878	protein-coding	0.015000	0.427861	
mm_142501.1	chr17	46032024	46032224	-	1	NA	NA	NA	253	NM_001287058	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.025000	0.388060	
mm_40264.1	chr5	38344313	38344513	+	1	NA	NA	NA	24	NR_046191	78172	Mm.243835	NR_046191	ENSMUSG00000106932	4930487D11Rik	-	RIKEN cDNA 4930487D11 gene	ncRNA	0.005000	0.457711	
mm_83421.1	chr9	44965453	44965653	-	1	NA	NA	NA	47	NM_001346698	140630	Mm.215069	NM_145400	ENSMUSG00000059890	Ube4a	4732444G18Rik|9930123J21Rik|UFD2b	ubiquitination factor E4A	protein-coding	0.080000	0.582090	
mm_92325.1	chr10	75764110	75764310	-	1	NA	NA	NA	147	NM_172549	104248	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0.115000	0.701493	
mm_102853.1	chr11	69395588	69395788	-	1	NA	NA	NA	-103	NM_030083	78304	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	0.055000	0.462687	24(GCTTTTAAACGC,+,0.00)
mm_125701.1	chr15	67176923	67177123	+	1	NA	NA	NA	-141	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.085000	0.701493	
mm_128485.1	chr15	50890001	50890201	-	1	NA	NA	NA	-60	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.120000	0.631841	-36(GTCTCTTTAAGG,-,0.00)
mm_86115.1	chr9	115499550	115499750	-	1	NA	NA	NA	117831	NR_130329	100316675		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	0.010000	0.437811	-39(CCTTTTAAGTCA,+,0.00)
mm_132275.1	chr16	32930000	32930200	+	1	NA	NA	NA	16000	NM_001310672	70144	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	0.010000	0.507463	
mm_45337.1	chr5	65697879	65698079	-	1	NA	NA	NA	-123	NM_001081321	71521	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0.190000	0.840796	
mm_42961.1	chr5	123104072	123104272	+	1	NA	NA	NA	27897	NM_001039723	330189	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0.025000	0.552239	
mm_61541.1	chr7	79297022	79297222	+	1	NA	NA	NA	23856	NM_018811	54608	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.050000	0.577114	
mm_8857.1	chr1	162715370	162715570	-	1	NA	NA	NA	25086	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.000000	0.417910	
mm_123340.1	chr14	63136384	63136584	-	1	NA	NA	NA	14022	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.025000	0.542289	
mm_38870.1	chr4	149663095	149663295	-	1	NA	NA	NA	121	NM_001164052	18707	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol 3-kinase catalytic delta polypeptide	protein-coding	0.020000	0.572139	
mm_15569.1	chr2	158624789	158624989	+	1	NA	NA	NA	-24	NM_175419	109275	Mm.27747	NM_175419	ENSMUSG00000037761	Actr5	AA545173|B430109J19Rik	ARP5 actin-related protein 5	protein-coding	0.055000	0.616915	
mm_39581.1	chr5	23465042	23465242	+	1	NA	NA	NA	30713	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.020000	0.447761	
mm_120096.1	chr14	58036512	58036712	+	1	NA	NA	NA	-36074	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.010000	0.517413	
mm_36054.1	chr4	57338905	57339105	-	1	NA	NA	NA	25287	NR_038179	73349	Mm.393774	NR_038178		1700042G15Rik	-	RIKEN cDNA 1700042G15 gene	ncRNA	0.050000	0.522388	
mm_94237.1	chr11	3292348	3292548	+	1	NA	NA	NA	1991	NM_019574	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.025000	0.512438	
mm_165427.1	chr2	152907757	152907957	+	1	NA	NA	NA	-3495	NM_001081044	228785	Mm.250604	NM_001081044	ENSMUSG00000027470	Mylk2	9830004H17Rik|BB138278	myosin, light polypeptide kinase 2, skeletal muscle	protein-coding	0.010000	0.626866	
mm_121599.1	chr14	7994474	7994674	-	1	NA	NA	NA	-392	NM_007870	13421	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.020000	0.567164	
mm_42364.1	chr5	114922359	114922559	+	1	NA	NA	NA	-781	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.020000	0.427861	
mm_99121.1	chr11	100145502	100145702	+	1	NA	NA	NA	324	NM_008471	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.060000	0.587065	
mm_16265.1	chr2	173522567	173522767	+	1	NA	NA	NA	75	NM_028158	72221	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0.065000	0.592040	
mm_92479.1	chr10	78283031	78283231	-	1	NA	NA	NA	-38489	NM_001081055	216131	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1	trafficking protein particle complex 10	protein-coding	0.040000	0.626866	
mm_126271.1	chr15	79141216	79141416	+	1	NA	NA	NA	-9	NM_027231	69833	Mm.279861	NM_027231	ENSMUSG00000033020	Polr2f	1810060D16Rik|RPB6	polymerase (RNA) II (DNA directed) polypeptide F	protein-coding	0.125000	0.636816	
mm_67523.1	chr7	80947650	80947850	-	1	NA	NA	NA	-200	NM_019951	56529	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	0.090000	0.656716	
mm_33191.1	chr4	126256559	126256759	+	1	NA	NA	NA	-340	NM_001145970	245877	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0.050000	0.587065	
mm_87926.1	chr10	62543721	62543921	+	1	NA	NA	NA	34636	NM_028197	72320	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.030000	0.527363	
mm_54186.1	chr6	24103903	24104103	-	1	NA	NA	NA	64089	NM_019481	55961	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0.005000	0.412935	
mm_74214.1	chr8	123949356	123949556	+	1	NA	NA	NA	-191	NM_172288	234865	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	0.110000	0.691542	
mm_32988.1	chr4	120291249	120291449	+	1	NA	NA	NA	-4088	NM_194060	329934	Mm.277090	NM_194060	ENSMUSG00000052135	Foxo6	-	forkhead box O6	protein-coding	0.005000	0.577114	
mm_50866.1	chr6	55376277	55376477	+	1	NA	NA	NA	82	NM_001003685	14602	Mm.89928	NM_001003685	ENSMUSG00000004654	Ghrhr	Ghrfr|lit|little	growth hormone releasing hormone receptor	protein-coding	0.015000	0.582090	
mm_16501.1	chr2	181212495	181212695	+	1	NA	NA	NA	576	NM_011481	20811	Mm.4752	NM_011481	ENSMUSG00000027579	Srms	A230069J08Rik|srm	src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	protein-coding	0.085000	0.611940	
mm_107262.1	chr12	28898526	28898726	+	1	NA	NA	NA	146798	NM_201357	380752	Mm.273724	NM_201357	ENSMUSG00000036613	Tssc1	D12Ertd604e|Eipr1	tumor suppressing subtransferable candidate 1	protein-coding	0.020000	0.517413	
mm_169812.1	chr16	19341913	19342113	-	1	NA	NA	NA	-55272	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.015000	0.467662	
mm_148633.1	chr19	5460552	5460752	+	1	NA	NA	NA	45	NM_021438	58249	Mm.329656	NM_021438	ENSMUSG00000024911	Fibp	2010004G08Rik|2010005N21Rik|3010027N18Rik	fibroblast growth factor (acidic) intracellular binding protein	protein-coding	0.105000	0.621891	
mm_79224.1	chr9	49954780	49954980	+	1	NA	NA	NA	-155487	NM_001311065	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding	0.005000	0.487562	
mm_143111.1	chr17	57194080	57194280	-	1	NA	NA	NA	1	NM_019418	50930	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0.025000	0.577114	
mm_29524.1	chr3	116634879	116635079	-	1	NA	NA	NA	-20392	NM_030016	229780	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	0.035000	0.512438	
mm_171576.1	chr4	147364482	147364682	+	1	NA	NA	NA	-188695	NM_001014397	433804	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154|OTTMUSG00000010673	zinc finger protein 985	protein-coding	0.005000	0.507463	
mm_74594.1	chr8	11626708	11626908	-	1	NA	NA	NA	8228	NR_030781	102334	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	0.000000	0.348259	
mm_134550.1	chr16	19982862	19983062	-	1	NA	NA	NA	87	NM_183390	239743	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.020000	0.507463	46(TCCCAGAAAAGG,-,0.00)
mm_144128.1	chr18	4920533	4920733	+	1	NA	NA	NA	108147	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA	0.100000	0.656716	
mm_7609.1	chr1	126492744	126492944	-	1	NA	NA	NA	83	NM_172484	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.070000	0.666667	
mm_121295.1	chr14	105499736	105499936	+	1	NA	NA	NA	1048	NR_045921	74864	Mm.159344	NR_045921	ENSMUSG00000022116	4930449E01Rik	-	RIKEN cDNA 4930449E01 gene	ncRNA	0.030000	0.477612	
mm_51452.1	chr6	80566052	80566252	+	1	NA	NA	NA	546509	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.000000	0.373134	
mm_22488.1	chr3	5750704	5750904	+	1	NA	NA	NA	-174556	NM_001163305	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.040000	0.432836	
mm_5374.1	chr1	30873781	30873981	-	1	NA	NA	NA	-10625	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding	0.170000	0.786070	
mm_160374.1	chr8	36505252	36505452	+	1	NA	NA	NA	16161	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding	0.020000	0.432836	
mm_145987.1	chr18	68272737	68272937	+	1	NA	NA	NA	-11864	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0.000000	0.388060	
mm_146889.1	chr18	25753790	25753990	-	1	NA	NA	NA	93	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.030000	0.512438	
mm_91442.1	chr10	33933065	33933265	-	1	NA	NA	NA	18047	NM_028287	72580	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	0.010000	0.417910	78(GGGTATAAATGG,-,0.00)
mm_149153.1	chr19	9015308	9015508	+	1	NA	NA	NA	-2496	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.015000	0.452736	
mm_136625.1	chr17	5547795	5547995	+	1	NA	NA	NA	55295	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.000000	0.383085	
mm_149167.1	chr19	9060272	9060472	+	1	NA	NA	NA	27584	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.005000	0.442786	
mm_32949.1	chr4	119543944	119544144	+	1	NA	NA	NA	4383	NM_172699	230700	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	0.000000	0.472637	
mm_51203.1	chr6	71325359	71325559	+	1	NA	NA	NA	2647	NM_009858	12526	Mm.333148	NM_009858	ENSMUSG00000053044	Cd8b1	Cd8b|Ly-3|Ly-C|Lyt-3	CD8 antigen, beta chain 1	protein-coding	0.000000	0.477612	
mm_39075.1	chr4	154299918	154300118	-	1	NA	NA	NA	-123	NM_001112744	230972	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.145000	0.781095	
mm_163612.1	chr13	51838415	51838615	+	1	NA	NA	NA	-8160	NM_011817	23882	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.015000	0.582090	
mm_46876.1	chr5	113842970	113843170	-	1	NA	NA	NA	-12569	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.015000	0.587065	
mm_153642.1	chr19	44146340	44146540	-	1	NA	NA	NA	6	NM_028607	73689	Mm.124685	NM_028607	ENSMUSG00000057506	Bloc1s2	2410089B13Rik|BLOS2|Bloc1s2a	biogenesis of lysosomal organelles complex-1, subunit 2	protein-coding	0.105000	0.671642	
mm_92401.1	chr10	76709011	76709211	-	1	NA	NA	NA	16933	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.000000	0.467662	
mm_131599.1	chr16	19035804	19036004	+	1	NA	NA	NA	159154	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.015000	0.507463	-22(CCCCTTATAAGC,-,0.00),-20(CCTTATAAGCAC,+,0.00)
mm_97639.1	chr11	79086966	79087166	+	1	NA	NA	NA	59288	NM_013571	16706	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb	kinase suppressor of ras 1	protein-coding	0.035000	0.577114	-35(CGCTTTATAAGG,-,0.00),-33(CTTTATAAGGCA,+,0.00)
mm_150421.1	chr19	37377521	37377721	+	1	NA	NA	NA	1218	NM_010615	16551	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	0.020000	0.447761	
mm_17643.1	chr2	31239384	31239584	-	1	NA	NA	NA	-6439	NM_019681	14299	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.045000	0.522388	
mm_30285.1	chr3	148989250	148989450	-	1	NA	NA	NA	-34715	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.115000	0.671642	
mm_144878.1	chr18	36783154	36783354	+	1	NA	NA	NA	45	NM_080636	70791	Mm.282700	NM_080636	ENSMUSG00000019143	Hars2	4631412B19Rik|HARSR|HO3|Harsl	histidyl-tRNA synthetase 2	protein-coding	0.075000	0.582090	
mm_39946.1	chr5	31877593	31877793	+	1	NA	NA	NA	179643	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.000000	0.427861	1(GCTTTTCAAGAC,+,0.00)
mm_72230.1	chr8	74872657	74872857	+	1	NA	NA	NA	-417	NM_027837	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	0.005000	0.467662	
mm_163512.1	chr12	113360464	113360664	-	1	NA	NA	NA	-129001	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.487562	-42(CCCCATTAATGC,-,0.00),-40(CCATTAATGCCC,+,0.00)
mm_114166.1	chr13	55464178	55464378	+	1	NA	NA	NA	11	NM_001030296	432763	Mm.315457	NM_001030296	ENSMUSG00000034686	Prr7	XM_484263	proline rich 7 (synaptic)	protein-coding	0.135000	0.751244	
mm_74131.1	chr8	123193920	123194120	+	1	NA	NA	NA	7785	NM_007876	13479	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	0.020000	0.522388	
mm_68196.1	chr7	104379842	104380042	-	1	NA	NA	NA	-21296	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.005000	0.333333	86(GTCTCTTAGAGG,-,0.00)
mm_60322.1	chr7	44225244	44225444	+	1	NA	NA	NA	-16	NM_001320332	16612	Mm.142722	NM_010639	ENSMUSG00000063903	Klk1	0610007D04Rik|KAL-B|Kal|Klk1b6|Klk6|mGk-6	kallikrein 1	protein-coding	0.005000	0.611940	62(GGGTTTTTAAAG,-,0.00),63(GGTTTTTAAAGG,-,0.00),64(GTTTTTAAAGGC,+,0.00)
mm_129845.1	chr15	83160809	83161009	-	1	NA	NA	NA	11264	NR_004432	104307	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.015000	0.547264	
mm_44940.1	chr5	36484168	36484368	-	1	NA	NA	NA	17	NM_001170454	231151	Mm.421558	NM_001170454	ENSMUSG00000029196	Tada2b	AA474455|Gm145	transcriptional adaptor 2B	protein-coding	0.185000	0.845771	
mm_4255.1	chr1	171411221	171411421	+	1	NA	NA	NA	8	NM_001305676	22278	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	0.085000	0.646766	
mm_163669.1	chr13	80883445	80883645	+	1	NA	NA	NA	123	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.020000	0.368159	-71(GACTTTTTAAGA,-,0.00)
mm_74591.1	chr8	11550622	11550822	-	1	NA	NA	NA	49	NM_024248	71941	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.085000	0.681592	
mm_90047.1	chr10	116018287	116018487	+	1	NA	NA	NA	24	NM_011217	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	0.045000	0.626866	
mm_118906.1	chr14	26655991	26656191	+	1	NA	NA	NA	13517	NR_106132	102465773		NR_106132	ENSMUSG00000098751	Mir7672	Gm27314|mmu-mir-7672	microRNA 7672	ncRNA	0.005000	0.338308	-30(GGTTATTAAAGG,-,0.00)
mm_128407.1	chr15	44706399	44706599	-	1	NA	NA	NA	-11	NM_001285843	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding	0.005000	0.532338	
mm_3391.1	chr1	140903937	140904137	+	1	NA	NA	NA	-247635	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0.000000	0.398010	
mm_172093.1	chr6	22288093	22288293	+	1	NA	NA	NA	-34	NM_053116	93735	Mm.137403	NM_053116	ENSMUSG00000029671	Wnt16	E130309I19Rik	wingless-type MMTV integration site family, member 16	protein-coding	0.025000	0.562189	
mm_105351.1	chr11	103017013	103017213	-	1	NA	NA	NA	34	NM_026551	68087	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	0.130000	0.726368	
mm_49580.1	chr6	30642236	30642436	+	1	NA	NA	NA	3118	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.030000	0.552239	
mm_75765.1	chr8	69974188	69974388	-	1	NA	NA	NA	95	NM_001113346	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.175000	0.796020	-71(GCCTTTAAGAGC,-,0.00),-70(CCTTTAAGAGCT,+,0.00)
mm_142681.1	chr17	47732939	47733139	-	1	NA	NA	NA	-3998	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.005000	0.547264	
mm_111912.1	chr12	108835689	108835889	-	1	NA	NA	NA	87	NM_181328	214663	Mm.266264	NM_181328	ENSMUSG00000021265	Slc25a29	C030003J19Rik|CACL|mCACL	solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29	protein-coding	0.130000	0.736318	-33(GCTTTTCTAGGA,+,0.00)
mm_45918.1	chr5	89441504	89441704	-	1	NA	NA	NA	16294	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.005000	0.373134	
mm_98558.1	chr11	95309791	95309991	+	1	NA	NA	NA	355	NM_001195004	217127	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	0.080000	0.582090	
mm_3203.1	chr1	135818746	135818946	+	1	NA	NA	NA	248	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding	0.140000	0.761194	
mm_129503.1	chr15	78899591	78899791	-	1	NA	NA	NA	-77	NR_133564	20401	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	0.055000	0.621891	
mm_154100.1	chr19	57008475	57008675	-	1	NA	NA	NA	0	NM_146102	226250	Mm.226284	NM_146102	ENSMUSG00000025083	Afap1l2	AU041783|C86904|mKIAA1914	actin filament associated protein 1-like 2	protein-coding	0.055000	0.601990	
mm_48824.1	chr5	149051603	149051803	-	1	NA	NA	NA	-87	NM_001313894	15289	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.130000	0.756219	
mm_160202.1	chr7	81571770	81571970	+	1	NA	NA	NA	578	NM_001004185	434204	Mm.181641	NM_001004185	ENSMUSG00000045795	Whamm	BB081391|Whdc1|mKIAA1971	WAS protein homolog associated with actin, golgi membranes and microtubules	protein-coding	0.155000	0.751244	
mm_66014.1	chr7	30598723	30598923	-	1	NA	NA	NA	-5881	NM_021397	58206	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	0.040000	0.537313	
mm_160699.1	chr10	41587430	41587630	-	1	NA	NA	NA	19065	NM_001303469	75973	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0.030000	0.467662	
mm_52387.1	chr6	113282209	113282409	+	1	NA	NA	NA	2	NM_170673	211232	Mm.65597	NM_170673	ENSMUSG00000030270	Cpne9	A730016F12Rik|mKIAA4217	copine family member IX	protein-coding	0.070000	0.706468	
mm_128741.1	chr15	64312465	64312665	-	1	NA	NA	NA	108	NM_001276462	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.170000	0.781095	
mm_25492.1	chr3	109340582	109340782	+	1	NA	NA	NA	-1	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.130000	0.786070	
mm_79520.1	chr9	57560862	57561062	+	1	NA	NA	NA	18	NM_022813	24044	Mm.286069	NM_022813	ENSMUSG00000040188	Scamp2	AI875466|Sc2	secretory carrier membrane protein 2	protein-coding	0.080000	0.646766	
mm_118750.1	chr14	22350527	22350727	+	1	NA	NA	NA	192171	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.005000	0.422886	54(GTGCCTAAAAGC,-,0.00)
mm_92791.1	chr10	81343208	81343408	-	1	NA	NA	NA	-42	NM_148951	209047	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0.155000	0.791045	
mm_82104.1	chr9	123067095	123067295	+	1	NA	NA	NA	32454	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.005000	0.472637	
mm_172777.1	chr8	9552222	9552422	+	1	NA	NA	NA	218701	NM_173446	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding	0.010000	0.522388	
mm_78368.1	chr9	27030645	27030845	+	1	NA	NA	NA	570	NM_178113	78658	Mm.251777	NM_178113	ENSMUSG00000035024	Ncapd3	2810487N22Rik|4632407J06Rik|AI195468|AU018739|B130055D15Rik|mKIAA0056	non-SMC condensin II complex, subunit D3	protein-coding	0.120000	0.611940	
mm_53090.1	chr6	125002680	125002880	+	1	NA	NA	NA	4170	NM_001145926	319352	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.010000	0.567164	
mm_124394.1	chr14	111674686	111674886	-	1	NA	NA	NA	-329	NM_198865	75409	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0.050000	0.597015	
mm_165603.1	chr3	50406957	50407157	+	1	NA	NA	NA	36556	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.407960	
mm_168654.1	chr11	87462191	87462391	+	1	NA	NA	NA	34700	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.090000	0.562189	
mm_101770.1	chr11	43901115	43901315	-	1	NA	NA	NA	22	NM_001284380	11548	Mm.39086	NM_007416	ENSMUSG00000050541	Adra1b	[a]1b	adrenergic receptor, alpha 1b	protein-coding	0.015000	0.462687	
mm_125894.1	chr15	75889736	75889936	+	1	NA	NA	NA	-1113	NM_001282443	223645		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0.010000	0.482587	
mm_46313.1	chr5	100572102	100572302	-	1	NA	NA	NA	3	NM_139198	231507	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.015000	0.502488	
mm_103211.1	chr11	70653169	70653369	-	1	NA	NA	NA	1381	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.015000	0.477612	
mm_98128.1	chr11	87404941	87405141	+	1	NA	NA	NA	-24	NM_031386	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.100000	0.691542	
mm_15456.1	chr2	157424189	157424389	+	1	NA	NA	NA	-4	NM_009271	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.180000	0.825871	
mm_85987.1	chr9	112185862	112186062	-	1	NA	NA	NA	-13	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.040000	0.552239	
mm_65356.1	chr7	25000502	25000702	-	1	NA	NA	NA	5335	NM_001290469	232975	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.025000	0.577114	
mm_114265.1	chr13	58071426	58071626	+	1	NA	NA	NA	30902	NM_001195075	100503085	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0.050000	0.562189	
mm_135857.1	chr16	59632453	59632653	-	1	NA	NA	NA	-4392	NR_040564	75145	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	0.025000	0.398010	-81(AGGTTTATAAGC,-,0.00)
mm_26700.1	chr3	157566780	157566980	+	1	NA	NA	NA	-12	NM_011196	19218	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0.115000	0.746269	
mm_129102.1	chr15	76014232	76014432	-	1	NA	NA	NA	4	NM_134087	105732	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	0.025000	0.631841	
mm_60169.1	chr7	40898854	40899054	+	1	NA	NA	NA	-324	NM_021387	58188	Mm.150675	NM_021387	ENSMUSG00000039257	Vstm2b	2900093B09Rik|AB030198	V-set and transmembrane domain containing 2B	protein-coding	0.075000	0.681592	
mm_26013.1	chr3	135347958	135348158	+	1	NA	NA	NA	21	NM_028946	74446	Mm.85000	NM_028946	ENSMUSG00000050150	Slc9b1	1700094G20Rik|4933424B12Rik|4933425K02Rik|Nhedc1|mtsNHE	solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1	protein-coding	0.055000	0.597015	-89(CCATTAAGAGCA,+,0.00)
mm_33402.1	chr4	129821493	129821693	+	1	NA	NA	NA	885	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.020000	0.417910	
mm_34771.1	chr4	153957136	153957336	+	1	NA	NA	NA	-1	NM_175287	97159	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding	0.145000	0.716418	
mm_48592.1	chr5	143909712	143909912	-	1	NA	NA	NA	27	NM_001172146	231872	Mm.200499	NM_146165	ENSMUSG00000029610	Aimp2	AA407136|AA407225|Aimp2(p38)|Jtv1	aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	protein-coding	0.050000	0.577114	
mm_78873.1	chr9	44482660	44482860	+	1	NA	NA	NA	-16376	NM_030256	80288	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.060000	0.656716	
mm_159568.1	chr4	112613539	112613739	+	1	NA	NA	NA	-101	NM_001285965	329919	Mm.259806	NM_177865	ENSMUSG00000034359	Skint2	A430070M19|B7S3|OTTMUSG00000008540|Skint-2	selection and upkeep of intraepithelial T cells 2	protein-coding	0.005000	0.427861	80(TCTTTTATAGGG,+,0.00)
mm_35259.1	chr4	19881238	19881438	-	1	NA	NA	NA	41228	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.025000	0.497512	
mm_52740.1	chr6	120463228	120463428	+	1	NA	NA	NA	131	NM_008359	16172	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.150000	0.751244	
mm_96709.1	chr11	69655714	69655914	+	1	NA	NA	NA	777	NM_009235	20670	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0.035000	0.587065	
mm_124199.1	chr14	98169372	98169572	-	1	NA	NA	NA	293	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.055000	0.582090	
mm_35367.1	chr4	32864508	32864708	-	1	NA	NA	NA	58897	NM_080471	140577	Mm.214766	NM_080471	ENSMUSG00000040183	Ankrd6	-	ankyrin repeat domain 6	protein-coding	0.045000	0.626866	
mm_131452.1	chr16	16870679	16870879	+	1	NA	NA	NA	43	NM_011624	21976	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding	0.085000	0.641791	
mm_150051.1	chr19	29380444	29380644	+	1	NA	NA	NA	13106	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.045000	0.542289	
mm_16384.1	chr2	178414452	178414652	+	1	NA	NA	NA	18	NM_001081289	71532	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	0.175000	0.810945	
mm_143745.1	chr17	81512999	81513199	-	1	NA	NA	NA	225288	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.010000	0.407960	
mm_14452.1	chr2	131170867	131171067	+	1	NA	NA	NA	3843	NM_027641	70997	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	0.015000	0.477612	-33(GGGTCTAAAAGA,-,0.00),83(CACCTTTAATGG,-,0.00),85(CCTTTAATGGAG,+,0.00)
mm_107261.1	chr12	28834608	28834808	+	1	NA	NA	NA	82880	NM_201357	380752	Mm.273724	NM_201357	ENSMUSG00000036613	Tssc1	D12Ertd604e|Eipr1	tumor suppressing subtransferable candidate 1	protein-coding	0.005000	0.427861	
mm_98053.1	chr11	85821761	85821961	+	1	NA	NA	NA	10527	NR_077059	69909	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.030000	0.601990	
mm_31859.1	chr4	78773948	78774148	+	1	NA	NA	NA	180001	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA	0.035000	0.522388	
mm_160733.1	chr10	78042339	78042539	+	1	NA	NA	NA	152	NM_001081695	54427	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.015000	0.606965	
mm_21000.1	chr2	152343816	152344016	-	1	NA	NA	NA	144	NM_175093	228775	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	0.085000	0.666667	
mm_34858.1	chr4	155542966	155543166	+	1	NA	NA	NA	-19326	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.025000	0.467662	
mm_95350.1	chr11	48802231	48802431	+	1	NA	NA	NA	298	NR_028563	100216534		NR_028563	ENSMUSG00000064725	Snord96a	U96	small nucleolar RNA, C/D box 96A	snoRNA	0.030000	0.517413	
mm_80493.1	chr9	78448110	78448310	+	1	NA	NA	NA	0	NM_026658	68291	Mm.291779	NM_026658	ENSMUSG00000032342	Mto1	2310039H01Rik|5730419A02Rik	mitochondrial tRNA translation optimization 1	protein-coding	0.105000	0.666667	
mm_71628.1	chr8	57455801	57456001	+	1	NA	NA	NA	-22	NM_009136	20284	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.010000	0.492537	
mm_171513.1	chr4	146501839	146502039	+	1	NA	NA	NA	-61	NM_001243138	100041433	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247|OTTMUSG00000011075	zinc finger protein 981	protein-coding	0.020000	0.462687	
mm_77453.1	chr8	121850960	121851160	-	1	NA	NA	NA	-21491	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.045000	0.582090	
mm_73222.1	chr8	99663906	99664106	+	1	NA	NA	NA	247332	NR_132435	234624	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	0.000000	0.517413	
mm_57307.1	chr6	124718722	124718922	-	1	NA	NA	NA	-432	NR_029792	723944		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0.060000	0.671642	
mm_107140.1	chr12	21417103	21417303	+	1	NA	NA	NA	233	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.165000	0.766169	
mm_120330.1	chr14	63317640	63317840	+	1	NA	NA	NA	-72469	NM_001310610	14463	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0.020000	0.472637	
mm_142211.1	chr17	37023124	37023324	-	1	NA	NA	NA	174	NM_010814	17441	Mm.210857	NM_010814	ENSMUSG00000076439	Mog	B230317G11Rik	myelin oligodendrocyte glycoprotein	protein-coding	0.015000	0.582090	
mm_126886.1	chr15	89454093	89454293	+	1	NA	NA	NA	282	NM_021921	60597	Mm.173337	NM_021921	ENSMUSG00000022619	Mapk8ip2	3230402N03Rik|AI847694|AW049958|IB2|Jip2|R75148	mitogen-activated protein kinase 8 interacting protein 2	protein-coding	0.115000	0.686567	
mm_167018.1	chr7	63938702	63938902	-	1	NA	NA	NA	113	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.125000	0.706468	
mm_149498.1	chr19	11912243	11912443	+	1	NA	NA	NA	-56	NM_172635	225929	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	0.150000	0.736318	
mm_88600.1	chr10	79793566	79793766	+	1	NA	NA	NA	94	NM_001161747	18483	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0.170000	0.796020	
mm_6581.1	chr1	75219772	75219972	-	1	NA	NA	NA	-578	NM_001313724	22145	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	0.080000	0.621891	
mm_82280.1	chr9	7358583	7358783	-	1	NA	NA	NA	11309	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.303483	
mm_63565.1	chr7	128115951	128116151	+	1	NA	NA	NA	-13517	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.015000	0.557214	
mm_92589.1	chr10	80075188	80075388	-	1	NA	NA	NA	21269	NM_001037741	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.065000	0.681592	
mm_148292.1	chr18	82584978	82585178	-	1	NA	NA	NA	30570	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.030000	0.577114	
mm_165241.1	chr2	64043670	64043870	+	1	NA	NA	NA	54268	NM_001267846	60344	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.005000	0.358209	56(TTTTTTAAAAGG,-,0.00)
mm_92903.1	chr10	83337408	83337608	-	1	NA	NA	NA	309	NM_177388	338365	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.175000	0.810945	
mm_6702.1	chr1	81835668	81835868	-	1	NA	NA	NA	-296148	NR_105762	102466629		NR_105762	ENSMUSG00000098797	Mir6344	Gm27840|mmu-mir-6344	microRNA 6344	ncRNA	0.000000	0.412935	
mm_64977.1	chr7	16874767	16874967	-	1	NA	NA	NA	-450	NM_001081655	629378	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	0.040000	0.517413	-88(GTCTATAAATAG,-,0.00)
mm_141220.1	chr17	27204364	27204564	-	1	NA	NA	NA	-26	NM_146075	224640	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	0.135000	0.766169	
mm_147556.1	chr18	54961585	54961785	-	1	NA	NA	NA	28495	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.005000	0.482587	
mm_130926.1	chr15	102979213	102979413	-	1	NA	NA	NA	2281	NM_008272	15427	Mm.4765	NM_008272	ENSMUSG00000036139	Hoxc9	Hox-3.2	homeobox C9	protein-coding	0.005000	0.572139	
mm_171076.1	chr3	120926737	120926937	-	1	NA	NA	NA	-40105	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA	0.015000	0.402985	
mm_73084.1	chr8	94480605	94480805	+	1	NA	NA	NA	7942	NM_001033207	434341	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	0.005000	0.353234	
mm_158517.1	chrX	143482948	143483148	-	1	NA	NA	NA	-35543	NM_001195048	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding	0.010000	0.323383	
mm_166927.1	chr7	33527259	33527459	+	1	NA	NA	NA	-6904	NM_001310615	626970		NM_001310615	ENSMUSG00000099900	Scgb2b21	Abpbg21|EG626970|Gm6725	secretoglobin, family 2B, member 21	protein-coding	0.010000	0.572139	
mm_69562.1	chr7	135700310	135700510	-	1	NA	NA	NA	15969	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.422886	
mm_64656.1	chr7	4150274	4150474	-	1	NA	NA	NA	-502	NM_175529	243813	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.025000	0.482587	
mm_58785.1	chr7	16119788	16119988	+	1	NA	NA	NA	12	NM_133727	70394	Mm.41101	NM_133727	ENSMUSG00000006021	Kptn	2310042D10Rik|2E4|C030013F01Rik	kaptin	protein-coding	0.050000	0.592040	
mm_58241.1	chr6	145047641	145047841	-	1	NA	NA	NA	1071	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.055000	0.547264	57(CTTTATAAATGG,-,0.00)
mm_122890.1	chr14	54948654	54948854	-	1	NA	NA	NA	388	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.030000	0.572139	
mm_64777.1	chr7	5013192	5013392	-	1	NA	NA	NA	-50	NM_001110330	23877	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	0.025000	0.517413	-88(TTGTTTAAAAGA,-,0.00)
mm_167847.1	chrX	6415605	6415805	+	1	NA	NA	NA	-37	NM_001313764	208431	Mm.23208	NM_001040459	ENSMUSG00000068270	Shroom4	D430043L16Rik|Gm724|Shrm4	shroom family member 4	protein-coding	0.030000	0.477612	3(GTGTTTAAAGAG,-,0.00),5(GTTTAAAGAGCC,+,0.00)
mm_142910.1	chr17	53463205	53463405	-	1	NA	NA	NA	16	NM_172497	211482	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	0.040000	0.537313	
mm_39126.1	chr4	155056706	155056906	-	1	NA	NA	NA	-10224	NM_001042407	668173	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0.040000	0.636816	
mm_97126.1	chr11	74926007	74926207	+	1	NA	NA	NA	235	NM_001002764	103677	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.115000	0.776119	
mm_25041.1	chr3	98291021	98291221	+	1	NA	NA	NA	10690	NM_008256	15360	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.025000	0.562189	
mm_157359.1	chrX	37100027	37100227	-	1	NA	NA	NA	10195	NM_026573	68134	Mm.271160	NM_026573	ENSMUSG00000036572	Upf3b	5730594O13Rik|AI317193|AW541158|RENT3B|UPF3X	UPF3 regulator of nonsense transcripts homolog B (yeast)	protein-coding	0.020000	0.427861	
mm_95892.1	chr11	58183749	58183949	+	1	NA	NA	NA	6	NM_001135115	631323	Mm.394103	NM_001135115		Gm12250	Irgb10|OTTMUSG00000005723	predicted gene 12250	protein-coding	0.000000	0.437811	60(CTCTTTATACAC,+,0.00)
mm_21397.1	chr2	157571180	157571380	-	1	NA	NA	NA	-4919	NM_016916	53619	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0.005000	0.542289	
mm_18883.1	chr2	76672899	76673099	-	1	NA	NA	NA	99	NM_010222	14231	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	0.020000	0.497512	
mm_18949.1	chr2	76781805	76782005	-	1	NA	NA	NA	106590	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.040000	0.482587	
mm_82891.1	chr9	32541496	32541696	-	1	NA	NA	NA	-144	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.040000	0.537313	
mm_26887.1	chr3	18177533	18177733	-	1	NA	NA	NA	65705	NM_007825	13123	Mm.316000	NM_007825	ENSMUSG00000039519	Cyp7b1	AW261589|D3Ertd552e|hct-1	cytochrome P450, family 7, subfamily b, polypeptide 1	protein-coding	0.010000	0.393035	-22(GTCTATAAAAGA,-,0.00)
mm_105046.1	chr11	100613305	100613505	-	1	NA	NA	NA	6763	NM_019795	56354	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0.005000	0.457711	
mm_81902.1	chr9	119982638	119982838	+	1	NA	NA	NA	1920	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.020000	0.537313	
mm_122085.1	chr14	30622065	30622265	-	1	NA	NA	NA	4043	NM_011103	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.010000	0.537313	-12(GTGCTTAAAGGG,-,0.00)
mm_66310.1	chr7	39797629	39797829	-	1	NA	NA	NA	279963	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.005000	0.402985	-91(GCTTTTCTAGCT,+,0.00)
mm_111943.1	chr12	109052996	109053196	-	1	NA	NA	NA	15121	NM_001163175	380785	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0.150000	0.800995	
mm_34487.1	chr4	148558395	148558595	+	1	NA	NA	NA	68	NR_131061	50912	Mm.266635	NM_016699	ENSMUSG00000017264	Exosc10	PM-Scl|PM/Scl-100|Pmscl2|RRP6|p2|p3|p4	exosome component 10	protein-coding	0.120000	0.661692	
mm_173345.1	chrY	90812872	90813072	+	1	NA	NA	NA	26434	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.000000	0.507463	
mm_11640.1	chr2	34874401	34874601	+	1	NA	NA	NA	105	NM_030021	77996	Mm.215255	NM_030021	ENSMUSG00000026870	Cutal	D730039F16Rik	cutA divalent cation tolerance homolog-like	protein-coding	0.040000	0.631841	
mm_53216.1	chr6	126853004	126853204	+	1	NA	NA	NA	6	NM_009650	11642	Mm.87748	NM_009650	ENSMUSG00000030344	Akap3	Prka3	A kinase (PRKA) anchor protein 3	protein-coding	0.000000	0.482587	
mm_33312.1	chr4	129070394	129070594	+	1	NA	NA	NA	12223	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.005000	0.502488	
mm_158826.1	chrX	167966537	167966737	-	1	NA	NA	NA	-111560	NM_001290428	333605	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	0.015000	0.368159	
mm_62402.1	chr7	101109218	101109418	+	1	NA	NA	NA	543	NM_199012	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.030000	0.557214	
mm_6091.1	chr1	63214135	63214335	-	1	NA	NA	NA	46	NM_146250	241070	Mm.103354	NM_146250	ENSMUSG00000046856	Gpr1	-	G protein-coupled receptor 1	protein-coding	0.030000	0.532338	
mm_23551.1	chr3	61367337	61367537	+	1	NA	NA	NA	2930	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.015000	0.527363	
mm_41270.1	chr5	89102012	89102212	+	1	NA	NA	NA	214852	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.005000	0.412935	
mm_67503.1	chr7	80779223	80779423	-	1	NA	NA	NA	24008	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.015000	0.487562	
mm_148196.1	chr18	79079561	79079761	-	1	NA	NA	NA	29730	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.005000	0.373134	
mm_47695.1	chr5	129779025	129779225	-	1	NA	NA	NA	8128	NM_133900	100678	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	0.060000	0.611940	
mm_172531.1	chr7	86342710	86342910	+	1	NA	NA	NA	-6416	NM_146617	258610	Mm.377592	NM_146617	ENSMUSG00000055610	Olfr307	MOR219-1	olfactory receptor 307	protein-coding	0.020000	0.517413	-56(ACTTATAGAGCC,+,0.00)
mm_167889.1	chrX	61075273	61075473	+	1	NA	NA	NA	-41005	NR_030706	331424	Mm.127263	NM_177916	ENSMUSG00000071753	C230004F18Rik	-	RIKEN cDNA C230004F18 gene	ncRNA	0.005000	0.462687	-98(CCTTTAAGACCT,+,0.00)
mm_77686.1	chr8	126474980	126475180	-	1	NA	NA	NA	-15	NM_001159907	212728	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.140000	0.696517	
mm_115431.1	chr13	117249609	117249809	+	1	NA	NA	NA	29136	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.015000	0.308458	
mm_68263.1	chr7	105592351	105592551	-	1	NA	NA	NA	7665	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.020000	0.542289	
mm_103381.1	chr11	75415012	75415212	-	1	NA	NA	NA	7511	NM_011340	20317	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.020000	0.522388	
mm_134028.1	chr16	5010535	5010735	-	1	NA	NA	NA	2918	NM_133185	66049	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	0.005000	0.557214	
mm_87414.1	chr10	46597834	46598034	+	1	NA	NA	NA	353185	NR_028276	108637		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0.005000	0.308458	
mm_61765.1	chr7	82866250	82866450	+	1	NA	NA	NA	-983	NM_175366	108797	Mm.306789	NM_175366	ENSMUSG00000057706	Mex3b	4931439A04Rik|M-04814|Rkhd3|mKIAA2009	mex3 RNA binding family member B	protein-coding	0.140000	0.781095	
mm_109090.1	chr12	104752102	104752302	+	1	NA	NA	NA	-250	NM_148948	192119	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	0.105000	0.676617	
mm_129943.1	chr15	84923849	84924049	-	1	NA	NA	NA	521	NM_016714	18141	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0.080000	0.606965	
mm_132188.1	chr16	32430929	32431129	+	1	NA	NA	NA	9	NM_001163159	13026	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	0.080000	0.641791	
mm_14158.1	chr2	126597575	126597775	+	1	NA	NA	NA	21003	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.015000	0.472637	
mm_74386.1	chr8	128722299	128722499	+	1	NA	NA	NA	36745	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.015000	0.432836	
mm_99622.1	chr11	104637298	104637498	+	1	NA	NA	NA	29398	NM_016780	16416	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding	0.015000	0.482587	
mm_128763.1	chr15	65992988	65993188	-	1	NA	NA	NA	-16284	NM_001145096	654498	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0.005000	0.383085	78(CTTTTTATGTCC,+,0.00)
mm_147677.1	chr18	60653098	60653298	-	1	NA	NA	NA	-10212	NR_045401	328963	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.045000	0.557214	
mm_79081.1	chr9	46242347	46242547	+	1	NA	NA	NA	1603	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.030000	0.542289	
mm_68604.1	chr7	116238320	116238520	-	1	NA	NA	NA	-644	NM_001305186	233765	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.020000	0.467662	
mm_104288.1	chr11	90130172	90130372	-	1	NA	NA	NA	99924	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.025000	0.502488	
mm_127328.1	chr15	100345673	100345873	+	1	NA	NA	NA	-7427	NM_001024672	554292	Mm.268451	NM_001024672	ENSMUSG00000093789	Methig1	Mettl7a2-Higd1c|Mettl7a2Higd1c|Mettl7a2higd1c|UbiE-YGHL1	methyltransferase hypoxia inducible domain containing 1	protein-coding	0.000000	0.472637	-33(TATTTTAAAAGG,-,0.00)
mm_24894.1	chr3	96162362	96162562	+	1	NA	NA	NA	492	NM_181409	194126	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	0.025000	0.532338	
mm_33866.1	chr4	135946371	135946571	+	1	NA	NA	NA	18	NM_008254	15356	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0.070000	0.656716	
mm_149759.1	chr19	22813228	22813428	+	1	NA	NA	NA	62723	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.010000	0.398010	-91(CCTTAAAAAACG,+,0.00)
mm_74298.1	chr8	126029183	126029383	+	1	NA	NA	NA	34181	NM_008430	16525	Mm.10800	NM_008430	ENSMUSG00000033998	Kcnk1	AI788889|TWIK-1	potassium channel, subfamily K, member 1	protein-coding	0.025000	0.517413	
mm_46604.1	chr5	107869012	107869212	-	1	NA	NA	NA	5995	NM_007964	14020	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0.120000	0.701493	29(GGCTCTTTAAGG,-,0.00),31(CTCTTTAAGGCC,+,0.00)
mm_18545.1	chr2	64975609	64975809	-	1	NA	NA	NA	47057	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0.005000	0.492537	
mm_62319.1	chr7	100319161	100319361	+	1	NA	NA	NA	33741	NM_177161	320452	Mm.150294	NM_177161	ENSMUSG00000051048	P4ha3	D930031A02Rik	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III	protein-coding	0.015000	0.457711	
mm_17086.1	chr2	22988103	22988303	-	1	NA	NA	NA	52038	NM_001077192	11308	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.010000	0.338308	
mm_24912.1	chr3	96246743	96246943	+	1	NA	NA	NA	143	NM_054045	97114	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	0.130000	0.691542	-34(GCGCCTATAAAG,-,0.00),-32(GCCTATAAAGGC,+,0.00),-32(GCCTATAAAGGC,-,0.00)
mm_31448.1	chr4	48588548	48588748	+	1	NA	NA	NA	3455	NM_021436	230157	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0.015000	0.353234	
mm_130647.1	chr15	100615829	100616029	-	1	NA	NA	NA	267	NM_011873	23994	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0.095000	0.711443	
mm_21943.1	chr2	167060743	167060943	-	1	NA	NA	NA	-2091	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.000000	0.512438	
mm_21237.1	chr2	156135280	156135480	-	1	NA	NA	NA	-8773	NM_001164216	67067	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	0.005000	0.263682	
mm_158941.1	chr1	78658297	78658497	+	1	NA	NA	NA	-43	NM_001136226	195434	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0.150000	0.746269	
mm_163177.1	chr11	87800920	87801120	+	1	NA	NA	NA	7236	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.015000	0.502488	
mm_162027.1	chr19	47865397	47865597	+	1	NA	NA	NA	-48	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.075000	0.661692	
mm_6549.1	chr1	75133444	75133644	-	1	NA	NA	NA	346	NM_194333	22626	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.010000	0.527363	
mm_164892.1	chr18	63386950	63387150	-	1	NA	NA	NA	133	NM_001039485	667742	Mm.158720	NM_172629	ENSMUSG00000041482	Piezo2	5930434P17|9030411M15Rik|9430028L06Rik|Fam38b|Fam38b2	piezo-type mechanosensitive ion channel component 2	protein-coding	0.100000	0.691542	
mm_114924.1	chr13	95325778	95325978	+	1	NA	NA	NA	-889	NM_001302539	72114	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	0.015000	0.492537	
mm_78144.1	chr9	20983437	20983637	+	1	NA	NA	NA	-6744	NM_010333	14739	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0.005000	0.487562	
mm_70203.1	chr7	144678780	144678980	-	1	NA	NA	NA	59712	NM_178642	101772	Mm.26700	NM_178642	ENSMUSG00000031075	Ano1	Tmem16a	anoctamin 1, calcium activated chloride channel	protein-coding	0.140000	0.701493	
mm_148150.1	chr18	77561609	77561809	-	1	NA	NA	NA	3427	NM_001164504	225743	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0.025000	0.348259	
mm_146779.1	chr18	20059554	20059754	-	1	NA	NA	NA	-100	NM_001317365	13506	Mm.280547	NM_013505	ENSMUSG00000024331	Dsc2	AW228162	desmocollin 2	protein-coding	0.025000	0.631841	
mm_76091.1	chr8	79680728	79680928	-	1	NA	NA	NA	30912	NM_015751	24015	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	0.120000	0.711443	
mm_62368.1	chr7	100607745	100607945	+	1	NA	NA	NA	151	NR_003559	52443	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e	mitochondrial ribosomal protein L48	protein-coding	0.140000	0.721393	
mm_89613.1	chr10	96037336	96037536	+	1	NA	NA	NA	96773	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.010000	0.353234	
mm_110818.1	chr12	72408481	72408681	-	1	NA	NA	NA	473	NM_001286448	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.075000	0.701493	
mm_88086.1	chr10	68239169	68239369	+	1	NA	NA	NA	39457	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.015000	0.477612	
mm_136817.1	chr17	12402997	12403197	+	1	NA	NA	NA	24488	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.020000	0.547264	
mm_24679.1	chr3	94837613	94837813	+	1	NA	NA	NA	146	NM_172683	229584	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	0.110000	0.701493	-33(GTCCCTTTAAGG,-,0.00),-31(CCCTTTAAGGCG,+,0.00),-30(CCTTTAAGGCGA,+,0.00)
mm_26760.1	chr3	8666940	8667140	-	1	NA	NA	NA	-2	NM_010423	15213	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.095000	0.686567	
mm_90795.1	chr10	7140302	7140502	-	1	NA	NA	NA	71835	NM_172546	215748	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.015000	0.457711	-31(GGTTTTAAATGG,-,0.00)
mm_169368.1	chr14	3287595	3287795	+	1	NA	NA	NA	25293	NR_038059	73549	Mm.398741	NR_038059	ENSMUSG00000079407	1700110I01Rik	100040740|1700016F01Rik|Gm2938	RIKEN cDNA 1700110I01 gene	ncRNA	0.015000	0.467662	
mm_89213.1	chr10	86705788	86705988	+	1	NA	NA	NA	77	NM_001003939	103220	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	0.095000	0.522388	
mm_93163.1	chr10	93265057	93265257	-	1	NA	NA	NA	46002	NM_001322268	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.040000	0.577114	
mm_43139.1	chr5	125393342	125393542	+	1	NA	NA	NA	-3425	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.020000	0.522388	
mm_89209.1	chr10	86701871	86702071	+	1	NA	NA	NA	3473	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.015000	0.417910	
mm_117698.1	chr13	94357413	94357613	-	1	NA	NA	NA	1410	NR_045619	328309	Mm.174191	NM_183205		Gm9776	A530089L17|ENSMUSG00000042857	predicted gene 9776	ncRNA	0.000000	0.184080	
mm_99780.1	chr11	107335850	107336050	+	1	NA	NA	NA	134770	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.015000	0.492537	
mm_140736.1	chr17	15706023	15706223	-	1	NA	NA	NA	1156	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.040000	0.592040	
mm_61536.1	chr7	79273120	79273320	+	1	NA	NA	NA	-46	NM_018811	54608	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.095000	0.706468	
mm_7352.1	chr1	106606693	106606893	-	1	NA	NA	NA	-60162	NR_106164	102466254		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.000000	0.308458	23(GCTTTTATATAA,+,0.00)
mm_31768.1	chr4	63544776	63544976	+	1	NA	NA	NA	111	NM_024173	66290	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0.080000	0.646766	
mm_27536.1	chr3	57575760	57575960	-	1	NA	NA	NA	16	NM_133784	97064	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0.065000	0.631841	
mm_67746.1	chr7	90475887	90476087	-	1	NA	NA	NA	8	NM_026734	68472	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	0.070000	0.626866	
mm_62834.1	chr7	113765932	113766132	+	1	NA	NA	NA	34	NM_145584	233744	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.070000	0.611940	
mm_17426.1	chr2	27463901	27464101	-	1	NA	NA	NA	11397	NM_023336	67382	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	0.035000	0.592040	
mm_78859.1	chr9	44396993	44397193	+	1	NA	NA	NA	-2	NM_001293630	14385	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0.075000	0.676617	
mm_156122.1	chrX	116345636	116345836	+	1	NA	NA	NA	-103208	NM_001033471	382239	Mm.336224	NM_001033471	ENSMUSG00000072995	Cpxcr1	Gm1143	CPX chromosome region, candidate 1	protein-coding	0.015000	0.417910	
mm_52760.1	chr6	120817668	120817868	+	1	NA	NA	NA	4917	NM_007510	11973	Mm.29045	NM_007510	ENSMUSG00000019210	Atp6v1e1	2410029D23Rik|Atp6e|Atp6e2|Atp6v1e|D6Ertd385e|E2|P31|Vma4	ATPase, H+ transporting, lysosomal V1 subunit E1	protein-coding	0.015000	0.517413	
mm_168297.1	chr11	106028330	106028530	-	1	NA	NA	NA	-8442	NM_027946	71833	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.035000	0.502488	9(CTCTTTAAAGAG,+,0.00),9(CTCTTTAAAGAG,-,0.00),11(CTTTAAAGAGGG,+,0.00)
mm_58372.1	chr6	148946064	148946264	-	1	NA	NA	NA	268	NM_019643	56306	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Tera	family with sequence similarity 60, member A	protein-coding	0.045000	0.492537	
mm_101118.1	chr11	12009394	12009594	-	1	NA	NA	NA	18477	NM_001177629	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.010000	0.417910	66(CCACTTAAAGCG,+,0.00)
mm_76914.1	chr8	105932580	105932780	-	1	NA	NA	NA	1182	NM_023182	109660	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.020000	0.592040	
mm_162596.1	chr1	183058540	183058740	-	1	NA	NA	NA	88917	NM_001278220	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0.005000	0.582090	
mm_35275.1	chr4	19922422	19922622	-	1	NA	NA	NA	44	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.020000	0.552239	
mm_29439.1	chr3	110142651	110142851	-	1	NA	NA	NA	721	NM_001163348	80883	Mm.39262	NM_030699	ENSMUSG00000059857	Ntng1	A930010C08Rik|AI853992|Lmnt1	netrin G1	protein-coding	0.130000	0.761194	
mm_78557.1	chr9	35669551	35669751	+	1	NA	NA	NA	12	NM_001033421	330921	Mm.479701	NM_001033421	ENSMUSG00000074452	Pate2	Gm846|Pate-M|mANLP1	prostate and testis expressed 2	protein-coding	0.005000	0.457711	
mm_119132.1	chr14	31160638	31160838	+	1	NA	NA	NA	7903	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.010000	0.527363	
mm_92448.1	chr10	77735094	77735294	-	1	NA	NA	NA	8708	NM_001205033	100502953	Mm.486157	NM_001205033	ENSMUSG00000096421	Gm10100	ENSMUSG00000061452	predicted gene 10100	protein-coding	0.005000	0.527363	-34(GGGTATAAAAGC,-,0.00)
mm_56200.1	chr6	88874907	88875107	-	1	NA	NA	NA	37	NM_001347327	319655	Mm.302613	NM_176973	ENSMUSG00000033152	Podxl2	D130074J02Rik|PODLX2	podocalyxin-like 2	protein-coding	0.180000	0.810945	
mm_65595.1	chr7	27337499	27337699	-	1	NA	NA	NA	13	NM_175641	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.075000	0.716418	
mm_69639.1	chr7	138846083	138846283	-	1	NA	NA	NA	84	NM_001045483	69546	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0.095000	0.611940	
mm_23332.1	chr3	54295212	54295412	+	1	NA	NA	NA	-65795	NM_001198766	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0.000000	0.313433	
mm_42131.1	chr5	111104710	111104910	+	1	NA	NA	NA	100666	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.005000	0.363184	
mm_77559.1	chr8	123426638	123426838	-	1	NA	NA	NA	15174	NM_023279	22152	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	0.025000	0.432836	38(TGCCTTAAAAGA,-,0.00)
mm_63520.1	chr7	127877060	127877260	+	1	NA	NA	NA	-337	NM_146259	244219	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.090000	0.611940	
mm_43971.1	chr5	146079078	146079278	+	1	NA	NA	NA	-80	NM_001105160	100041449	Mm.301900	NM_001105160	ENSMUSG00000061292	Cyp3a59	ENSMUSG00000061292	cytochrome P450, family 3, subfamily a, polypeptide 59	protein-coding	0.000000	0.487562	
mm_136097.1	chr16	85079835	85080035	-	1	NA	NA	NA	93772	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.065000	0.577114	
mm_21229.1	chr2	155979356	155979556	-	1	NA	NA	NA	22898	NM_177217	16328	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	0.010000	0.542289	
mm_3375.1	chr1	139056661	139056861	+	1	NA	NA	NA	79104	NR_108103	78229	Mm.437838	NR_108103	ENSMUSG00000104900	4930596I21Rik	-	RIKEN cDNA 4930596I21 gene	ncRNA	0.005000	0.353234	
mm_105443.1	chr11	104416940	104417140	-	1	NA	NA	NA	25251	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.010000	0.373134	
mm_131915.1	chr16	23307948	23308148	+	1	NA	NA	NA	17578	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.000000	0.407960	
mm_146767.1	chr18	20001909	20002109	-	1	NA	NA	NA	88	NM_007882	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding	0.060000	0.606965	
mm_34658.1	chr4	150866381	150866581	+	1	NA	NA	NA	11390	NM_133753	74155	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.035000	0.537313	25(ACCCATTAAAAG,-,0.00),27(CCATTAAAAGCT,+,0.00)
mm_25160.1	chr3	103049561	103049761	+	1	NA	NA	NA	-8624	NM_010937	18176	Mm.400954	NM_010937	ENSMUSG00000027852	Nras	AV095280|N-ras	neuroblastoma ras oncogene	protein-coding	0.010000	0.363184	14(GCTTTTCAAGCC,+,0.00)
mm_6878.1	chr1	84363680	84363880	-	1	NA	NA	NA	-79135	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.005000	0.492537	
mm_44035.1	chr5	147468367	147468567	+	1	NA	NA	NA	37887	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.015000	0.427861	
mm_78020.1	chr9	13749080	13749280	+	1	NA	NA	NA	-1	NM_023858	77116	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.125000	0.726368	
mm_4173.1	chr1	171121589	171121789	+	1	NA	NA	NA	28	NM_001081275	75472	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.010000	0.487562	-61(CCTCTTATGCCC,+,0.00)
mm_8437.1	chr1	152766200	152766400	-	1	NA	NA	NA	5	NM_001346118	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.105000	0.681592	
mm_4982.1	chr1	191717792	191717992	+	1	NA	NA	NA	-132	NM_172266	226856	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0.140000	0.746269	
mm_5925.1	chr1	55226432	55226632	-	1	NA	NA	NA	250	NM_028713	74013	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	0.045000	0.547264	
mm_153501.1	chr19	41332972	41333172	-	1	NA	NA	NA	51998	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.010000	0.467662	
mm_7136.1	chr1	91056400	91056600	-	1	NA	NA	NA	3056	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.025000	0.507463	
mm_129140.1	chr15	76200458	76200658	-	1	NA	NA	NA	49	NM_201390	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.040000	0.696517	
mm_187.1	chr1	15491338	15491538	+	1	NA	NA	NA	178986	NM_001098528	98741	Mm.156081	NM_001033195	ENSMUSG00000092083	Kcnb2	9630047L19Rik|BB130875|Kv2.2	potassium voltage gated channel, Shab-related subfamily, member 2	protein-coding	0.005000	0.278607	
mm_172952.1	chr9	87161733	87161933	-	1	NA	NA	NA	17527	NM_001101482	244958	Mm.335337	NM_001101482	ENSMUSG00000042761	Mrap2	BB633055	melanocortin 2 receptor accessory protein 2	protein-coding	0.060000	0.651741	
mm_134382.1	chr16	17201105	17201305	-	1	NA	NA	NA	287	NM_009456	22195	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0.125000	0.746269	
mm_144295.1	chr18	12173460	12173660	+	1	NA	NA	NA	4830	NM_029623	76482	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1	RIKEN cDNA 3110002H16 gene	protein-coding	0.020000	0.492537	-25(GAGTTTTAAAAG,-,0.00),-23(GTTTTAAAAGTC,+,0.00)
mm_80918.1	chr9	100884928	100885128	+	1	NA	NA	NA	149856	NM_001311149	66904	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0.005000	0.323383	
mm_42794.1	chr5	121660544	121660744	+	1	NA	NA	NA	81	NM_001289543	72399	Mm.153372	NM_028227	ENSMUSG00000029458	Brap	3010002G07Rik|BRAP2|IMP	BRCA1 associated protein	protein-coding	0.165000	0.791045	
mm_144016.1	chr17	88791900	88792100	-	1	NA	NA	NA	-24	NM_013582	16867	Mm.1644	NM_013582	ENSMUSG00000024107	Lhcgr	Gpcr19-rs1|LH-R|Lhr	luteinizing hormone/choriogonadotropin receptor	protein-coding	0.075000	0.741294	
mm_130758.1	chr15	101274276	101274476	-	1	NA	NA	NA	7530	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.025000	0.562189	
mm_43496.1	chr5	136967767	136967967	+	1	NA	NA	NA	-2	NM_021719	60363	Mm.87202	NM_021719	ENSMUSG00000001739	Cldn15	2210009B08Rik|BB107105	claudin 15	protein-coding	0.040000	0.616915	
mm_104364.1	chr11	94321827	94322027	-	1	NA	NA	NA	-16	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.105000	0.691542	
mm_144633.1	chr18	32939353	32939553	+	1	NA	NA	NA	412	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.105000	0.636816	
mm_148960.1	chr19	7493926	7494126	+	1	NA	NA	NA	-14	NM_001163505	109168	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0.065000	0.577114	
mm_75679.1	chr8	68042595	68042795	-	1	NA	NA	NA	-68121	NM_177698	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.000000	0.353234	
mm_57860.1	chr6	129533171	129533371	-	1	NA	NA	NA	13	NR_045270	100504641	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0.060000	0.562189	
mm_71319.1	chr8	44935241	44935441	+	1	NA	NA	NA	-14867	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.050000	0.597015	
mm_74657.1	chr8	13548857	13549057	-	1	NA	NA	NA	13504	NM_025601	66501	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.015000	0.601990	
mm_110836.1	chr12	72907391	72907591	-	1	NA	NA	NA	10274	NM_029444	75801	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	0.000000	0.318408	-52(GTTTTTAAAGAC,+,0.00)
mm_58863.1	chr7	16908626	16908826	+	1	NA	NA	NA	2236	NM_008967	19222	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0.025000	0.601990	
mm_45525.1	chr5	72636132	72636332	-	1	NA	NA	NA	6520	NM_007723	12788	Mm.436652	NM_007723	ENSMUSG00000067220	Cnga1	Cncg	cyclic nucleotide gated channel alpha 1	protein-coding	0.010000	0.492537	
mm_86385.1	chr9	123872867	123873067	-	1	NA	NA	NA	-10938	NM_011798	23832	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0.000000	0.432836	
mm_43745.1	chr5	140321543	140321743	+	1	NA	NA	NA	-91	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.095000	0.626866	
mm_31707.1	chr4	62619423	62619623	+	1	NA	NA	NA	-149	NM_001081650	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.030000	0.537313	
mm_136463.1	chr16	95359311	95359511	-	1	NA	NA	NA	99937	NM_001302154	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	0.040000	0.427861	20(GCATTTATACAC,+,0.00)
mm_75486.1	chr8	48843270	48843470	-	1	NA	NA	NA	-168680	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.120000	0.721393	
mm_106059.1	chr11	116130921	116131121	-	1	NA	NA	NA	107	NM_178802	338364	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0.075000	0.636816	-24(GCCCCTTTAAGA,-,0.00),-22(CCCTTTAAGAGA,-,0.00),-21(CCTTTAAGAGAT,+,0.00)
mm_148680.1	chr19	5646755	5646955	+	1	NA	NA	NA	9365	NM_009045	19697	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.010000	0.577114	
mm_164922.1	chr18	77185533	77185733	+	1	NA	NA	NA	-214	NM_153124	225742	Mm.365178	NM_013666	ENSMUSG00000025425	St8sia5	ST8SiaV|Siat8e	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding	0.125000	0.736318	
mm_117400.1	chr13	73692520	73692720	-	1	NA	NA	NA	-7206	NM_027780	71390	Mm.105251	NM_027780		Slc6a19os	5430425J12Rik	solute carrier family 6 (neurotransmitter transporter), member 19, opposite strand	protein-coding	0.010000	0.577114	
mm_167730.1	chr9	104102495	104102695	-	1	NA	NA	NA	24048	NM_145700	252837	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	0.005000	0.611940	
mm_171065.1	chr3	112152030	112152230	+	1	NA	NA	NA	270227	NR_045362	625585	Mm.389497	NR_045362	ENSMUSG00000104543	Gm6602	-	predicted gene 6602	ncRNA	0.005000	0.507463	
mm_132660.1	chr16	41801754	41801954	+	1	NA	NA	NA	268512	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.000000	0.273632	31(GGCCTTAAATGG,-,0.00),33(CCTTAAATGGGC,+,0.00)
mm_8002.1	chr1	134549513	134549713	-	1	NA	NA	NA	69	NM_001145300	71001	Mm.158529	NM_183292	ENSMUSG00000046367	Mgat4e	4931440L10Rik	MGAT4 family, member E	protein-coding	0.010000	0.537313	
mm_99813.1	chr11	108404721	108404921	+	1	NA	NA	NA	9524	NM_013475	11818	Mm.2266	NM_013475	ENSMUSG00000000049	Apoh	B2GPI|beta-2-GPI|beta2-GPI	apolipoprotein H	protein-coding	0.015000	0.427861	
mm_94155.1	chr10	128744767	128744967	-	1	NA	NA	NA	-811	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.020000	0.557214	
mm_122144.1	chr14	31188646	31188846	-	1	NA	NA	NA	18080	NM_022656	64652	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1	nischarin	protein-coding	0.025000	0.537313	
mm_104413.1	chr11	94653597	94653797	-	1	NA	NA	NA	57	NM_177752	268465	Mm.358937	NM_177752	ENSMUSG00000039055	Eme1	6820428D13	essential meiotic structure-specific endonuclease 1	protein-coding	0.060000	0.597015	
mm_52457.1	chr6	113690892	113691092	+	1	NA	NA	NA	-6058	NM_001347356	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.030000	0.592040	
mm_32402.1	chr4	106911341	106911541	+	1	NA	NA	NA	-29	NM_198438	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.175000	0.791045	
mm_35369.1	chr4	32923424	32923624	-	1	NA	NA	NA	-19	NM_001012450	140577	Mm.214766	NM_080471	ENSMUSG00000040183	Ankrd6	-	ankyrin repeat domain 6	protein-coding	0.025000	0.557214	
mm_141963.1	chr17	35121092	35121292	-	1	NA	NA	NA	100	NM_001303476	13001	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	0.080000	0.661692	
mm_103648.1	chr11	78969295	78969495	-	1	NA	NA	NA	15529	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.025000	0.502488	
mm_41596.1	chr5	95960212	95960412	+	1	NA	NA	NA	3373	NM_018866	55985	Mm.10116	NM_018866	ENSMUSG00000023078	Cxcl13	4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13	chemokine (C-X-C motif) ligand 13	protein-coding	0.000000	0.383085	
mm_50699.1	chr6	52026524	52026724	+	1	NA	NA	NA	-14075	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.040000	0.577114	
mm_148448.1	chr19	3972389	3972589	+	1	NA	NA	NA	161	NM_001177438	621603	Mm.34137	NM_001177438	ENSMUSG00000075296	Aldh3b2	AI848594|C130048D07Rik	aldehyde dehydrogenase 3 family, member B2	protein-coding	0.015000	0.582090	
mm_59193.1	chr7	24499502	24499702	+	1	NA	NA	NA	-7485	NM_001290461	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.065000	0.631841	
mm_50594.1	chr6	49071111	49071311	+	1	NA	NA	NA	-2584	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.000000	0.442786	
mm_30775.1	chr4	17945855	17946055	+	1	NA	NA	NA	92497	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.005000	0.427861	
mm_19813.1	chr2	110362893	110363093	-	1	NA	NA	NA	0	NM_026271	67606	Mm.291809	NM_026271	ENSMUSG00000074971	Fibin	1110018M03Rik	fin bud initiation factor homolog (zebrafish)	protein-coding	0.055000	0.611940	
mm_23557.1	chr3	62338931	62339131	+	1	NA	NA	NA	254	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	0.115000	0.726368	
mm_31272.1	chr4	45342166	45342366	+	1	NA	NA	NA	165	NM_153167	242418	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	0.145000	0.776119	
mm_91416.1	chr10	31690485	31690685	-	1	NA	NA	NA	-80860	NM_001146349	268291	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.005000	0.368159	
mm_22922.1	chr3	31096747	31096947	+	1	NA	NA	NA	1789	NM_001039090	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.010000	0.368159	
mm_51838.1	chr6	90302012	90302212	+	1	NA	NA	NA	842	NM_177738	243535	Mm.233854	NM_177738	ENSMUSG00000049694	BC048671	-	cDNA sequence BC048671	protein-coding	0.000000	0.527363	
mm_22292.1	chr2	180257012	180257212	-	1	NA	NA	NA	-267	NM_025587	66481	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0.075000	0.691542	
mm_31328.1	chr4	46450948	46451148	+	1	NA	NA	NA	122	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.145000	0.751244	
mm_4989.1	chr1	191719097	191719297	+	1	NA	NA	NA	802	NM_001134829	226856	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0.090000	0.611940	
mm_167749.1	chr9	109849154	109849354	+	1	NA	NA	NA	202	NM_009921	12796	Mm.3834	NM_009921	ENSMUSG00000038357	Camp	CAP18|Cnlp|Cramp|FALL39|MCLP	cathelicidin antimicrobial peptide	protein-coding	0.020000	0.537313	
mm_59885.1	chr7	30298852	30299052	+	1	NA	NA	NA	7199	NM_001081114	76686	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	0.030000	0.597015	
mm_138070.1	chr17	33941159	33941359	+	1	NA	NA	NA	536	NM_020603	57315	Mm.2437	NM_020603	ENSMUSG00000024312	Wdr46	2310007I04Rik|Bing4|C78447|C78559	WD repeat domain 46	protein-coding	0.055000	0.636816	
mm_5021.1	chr1	193153094	193153294	+	1	NA	NA	NA	82	NM_016851	54139	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	0.070000	0.701493	
mm_139588.1	chr17	57223741	57223941	+	1	NA	NA	NA	4295	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.020000	0.562189	
mm_27716.1	chr3	68761318	68761518	-	1	NA	NA	NA	69994	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.025000	0.572139	
mm_89180.1	chr10	86345730	86345930	+	1	NA	NA	NA	45418	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.025000	0.567164	
mm_153868.1	chr19	46675249	46675449	-	1	NA	NA	NA	-2349	NM_007809	13074	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.025000	0.517413	
mm_56068.1	chr6	86787465	86787665	-	1	NA	NA	NA	6019	NM_013471	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.010000	0.407960	
mm_25710.1	chr3	122511857	122512057	+	1	NA	NA	NA	29724	NR_106117	102465764		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.015000	0.482587	
mm_4903.1	chr1	189860281	189860481	+	1	NA	NA	NA	61907	NM_026796	226830	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.030000	0.487562	
mm_115593.1	chr13	11827070	11827270	-	1	NA	NA	NA	279775	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.000000	0.323383	-4(CCTTTTAGATAC,+,0.00)
mm_37208.1	chr4	117883368	117883568	-	1	NA	NA	NA	8	NR_045570	53418	Mm.123843	NM_017377	ENSMUSG00000028541	B4galt2	Ggtb2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	protein-coding	0.190000	0.860697	
mm_119482.1	chr14	47358114	47358314	+	1	NA	NA	NA	-15646	NM_010705	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.015000	0.552239	
mm_149744.1	chr19	22448087	22448287	+	1	NA	NA	NA	-21	NM_177341	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.025000	0.572139	
mm_67068.1	chr7	67759647	67759847	-	1	NA	NA	NA	-5	NM_207663	233335	Mm.60526	NM_183312	ENSMUSG00000030554	Synm	4930412K21Rik|AI852401|Dmn|E130104F11|Syn|Synemin	synemin, intermediate filament protein	protein-coding	0.135000	0.736318	
mm_325.1	chr1	24678813	24679013	+	1	NA	NA	NA	-5	NM_001310483	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.075000	0.691542	
mm_131734.1	chr16	21930958	21931158	+	1	NA	NA	NA	16494	NM_025693	66664	Mm.46480	NM_025693	ENSMUSG00000022856	Tmem41a	2900010K02Rik|5730578N08Rik	transmembrane protein 41a	protein-coding	0.005000	0.353234	
mm_17999.1	chr2	38194365	38194565	-	1	NA	NA	NA	92919	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.005000	0.393035	
mm_133163.1	chr16	70417510	70417710	+	1	NA	NA	NA	103661	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.005000	0.398010	
mm_54353.1	chr6	31069779	31069979	-	1	NA	NA	NA	-6786	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.005000	0.417910	51(GTGCTTTAAAAG,-,0.00),52(TGCTTTAAAAGT,-,0.00),53(GCTTTAAAAGTC,+,0.00)
mm_61947.1	chr7	90191600	90191800	+	1	NA	NA	NA	61468	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.005000	0.378109	67(GCTTATATATAC,+,0.00)
mm_151078.1	chr19	47585217	47585417	+	1	NA	NA	NA	5298	NM_001164639	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0.020000	0.398010	
mm_59279.1	chr7	24907216	24907416	+	1	NA	NA	NA	2970	NM_001130152	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.010000	0.552239	
mm_140748.1	chr17	15831140	15831340	-	1	NA	NA	NA	-4654	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.085000	0.606965	-38(AGCTATAAAAAG,-,0.00)
mm_37500.1	chr4	123718030	123718230	-	1	NA	NA	NA	31	NR_002445	170658	Mm.375824	NR_002445		BC002163	-	NADH dehydrogenase Fe-S protein 5 pseudogene	pseudo	0.085000	0.606965	
mm_144657.1	chr18	34247595	34247795	+	1	NA	NA	NA	-25923	NR_040534	633395	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	ENSMUSG00000073607	ribosomal protein L29 pseudogene	pseudo	0.040000	0.611940	
mm_78033.1	chr9	13827683	13827883	+	1	NA	NA	NA	56	NM_176836	72826	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0.130000	0.701493	
mm_121144.1	chr14	101898439	101898639	+	1	NA	NA	NA	57916	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.020000	0.462687	
mm_62019.1	chr7	91542879	91543079	+	1	NA	NA	NA	452193	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.035000	0.592040	
mm_104535.1	chr11	96347213	96347413	-	1	NA	NA	NA	3544	NM_010458	15410	Mm.342481	NM_010458	ENSMUSG00000048763	Hoxb3	Hox-2.7	homeobox B3	protein-coding	0.005000	0.477612	
mm_115626.1	chr13	12105337	12105537	-	1	NA	NA	NA	1508	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.020000	0.522388	
mm_66173.1	chr7	33944894	33945094	-	1	NA	NA	NA	-9	NM_178308	110187	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	0.005000	0.497512	-23(TGTTTTATAAGG,-,0.00)
mm_61694.1	chr7	81104841	81105041	+	1	NA	NA	NA	-9858	NM_001004184	434203	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	0.010000	0.477612	
mm_55742.1	chr6	77545099	77545299	-	1	NA	NA	NA	-162724	NR_045141	70753	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	0.000000	0.492537	
mm_109397.1	chr12	109947078	109947278	+	1	NA	NA	NA	199300	NR_037233	100499517		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	0.005000	0.572139	
mm_138553.1	chr17	35264793	35264993	+	1	NA	NA	NA	1770	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.000000	0.417910	
mm_13228.1	chr2	97497257	97497457	+	1	NA	NA	NA	29700	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.000000	0.393035	
mm_139147.1	chr17	47527885	47528085	+	1	NA	NA	NA	22934	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.457711	
mm_47017.1	chr5	115489735	115489935	-	1	NA	NA	NA	-5351	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.035000	0.542289	
mm_92192.1	chr10	68119797	68119997	-	1	NA	NA	NA	140299	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.000000	0.348259	6(GCCTATTAATAG,-,0.00)
mm_53534.1	chr6	136630121	136630321	+	1	NA	NA	NA	31672	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.005000	0.497512	
mm_95232.1	chr11	44520321	44520521	+	1	NA	NA	NA	1044	NM_001166553	74315	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.025000	0.467662	
mm_39554.1	chr5	21901490	21901690	+	1	NA	NA	NA	-35986	NM_030727	80979	Mm.160370	NM_030727	ENSMUSG00000029015	Slc26a5	Pres|prestin	solute carrier family 26, member 5	protein-coding	0.040000	0.592040	
mm_7023.1	chr1	87098007	87098207	-	1	NA	NA	NA	3499	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.005000	0.447761	
mm_11245.1	chr2	29890002	29890202	+	1	NA	NA	NA	39	NM_013615	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.120000	0.736318	
mm_37089.1	chr4	116507379	116507579	-	1	NA	NA	NA	-70	NM_008389	16351	Mm.1350	NM_008389	ENSMUSG00000028696	Ipp	D4Jhu8|Mipp	IAP promoted placental gene	protein-coding	0.075000	0.636816	
mm_68261.1	chr7	105592271	105592471	-	1	NA	NA	NA	7745	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.010000	0.507463	
mm_28848.1	chr3	96727470	96727670	-	1	NA	NA	NA	-41	NM_026406	67845	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.110000	0.736318	
mm_23709.1	chr3	68869268	68869468	+	1	NA	NA	NA	-218	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.105000	0.686567	
mm_58987.1	chr7	19086203	19086403	+	1	NA	NA	NA	-525	NR_037282	100526504		NR_037282	ENSMUSG00000092659	Mir3100	mir-3100|mmu-mir-3100	microRNA 3100	ncRNA	0.035000	0.547264	
mm_84109.1	chr9	58313101	58313301	-	1	NA	NA	NA	11	NM_010729	16949	Mm.250492	NM_010729	ENSMUSG00000032334	Loxl1	Loxl	lysyl oxidase-like 1	protein-coding	0.055000	0.631841	
mm_136300.1	chr16	91548078	91548278	-	1	NA	NA	NA	1084	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.005000	0.502488	
mm_11942.1	chr2	52872027	52872227	+	1	NA	NA	NA	14259	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.005000	0.442786	
mm_47950.1	chr5	135489117	135489317	-	1	NA	NA	NA	55905	NM_146001	215114	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.100000	0.756219	
mm_63581.1	chr7	128118043	128118243	+	1	NA	NA	NA	-11425	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.005000	0.427861	38(GGATATTAAAGG,-,0.00)
mm_91079.1	chr10	19011837	19012037	-	1	NA	NA	NA	26	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.010000	0.437811	-59(ATCTTTAAAAGT,-,0.00),-58(TCTTTAAAAGTG,+,0.00)
mm_87664.1	chr10	58497844	58498044	+	1	NA	NA	NA	7	NM_001162956	76138	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.100000	0.651741	
mm_135483.1	chr16	46010140	46010340	-	1	NA	NA	NA	173	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.050000	0.631841	
mm_12851.1	chr2	83659451	83659651	+	1	NA	NA	NA	14973	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.010000	0.248756	
mm_117545.1	chr13	83729464	83729664	-	1	NA	NA	NA	1458	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.055000	0.532338	
mm_60160.1	chr7	39552728	39552928	+	1	NA	NA	NA	35062	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.085000	0.626866	
mm_160672.1	chr10	6787980	6788180	+	1	NA	NA	NA	-490	NM_001304950	18390	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0.000000	0.378109	
mm_30210.1	chr3	144849202	144849402	-	1	NA	NA	NA	0	NM_139148	229927	Mm.290600	NM_139148	ENSMUSG00000037033	Clca3b	Clca4	chloride channel accessory 3B	protein-coding	0.020000	0.527363	
mm_104202.1	chr11	87987433	87987633	-	1	NA	NA	NA	0	NM_026556	68097	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	0.185000	0.805970	
mm_60023.1	chr7	30832405	30832605	+	1	NA	NA	NA	-8730	NM_146187	233079	Mm.97338	NM_146187	ENSMUSG00000051314	Ffar2	GPCR43|Gpr43	free fatty acid receptor 2	protein-coding	0.035000	0.597015	
mm_100425.1	chr11	119447463	119447663	+	1	NA	NA	NA	-43784	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.005000	0.452736	
mm_4079.1	chr1	166339324	166339524	+	1	NA	NA	NA	-39743	NM_030245	27878	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0.025000	0.542289	
mm_153158.1	chr19	34475047	34475247	-	1	NA	NA	NA	-12	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.030000	0.597015	
mm_30072.1	chr3	137981389	137981589	-	1	NA	NA	NA	60	NM_011932	26377	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.030000	0.582090	
mm_37971.1	chr4	133498447	133498647	-	1	NA	NA	NA	3	NM_001081156	69539	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	0.085000	0.686567	
mm_53268.1	chr6	128399707	128399907	+	1	NA	NA	NA	41	NM_001162858	60345	Mm.269883	NM_021717	ENSMUSG00000001520	Nrip2	AW491344|NIX1	nuclear receptor interacting protein 2	protein-coding	0.055000	0.626866	
mm_151198.1	chr19	53537398	53537598	+	1	NA	NA	NA	8180	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.045000	0.567164	
mm_114098.1	chr13	54718466	54718666	+	1	NA	NA	NA	17103	NM_001033364	268663	Mm.315382	NM_001033364	ENSMUSG00000034918	Cdhr2	Gm624|PC-LKC|Pcdh24	cadherin-related family member 2	protein-coding	0.035000	0.557214	
mm_106013.1	chr11	115885134	115885334	-	1	NA	NA	NA	-14905	NM_183259	66528	Mm.275740	NM_183259	ENSMUSG00000048442	Smim5	2210020M01Rik	small integral membrane protein 5	protein-coding	0.035000	0.606965	
mm_90407.1	chr10	127420229	127420429	+	1	NA	NA	NA	-538	NM_027900	71750	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.020000	0.542289	
mm_50290.1	chr6	47454339	47454539	+	1	NA	NA	NA	115	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.160000	0.800995	
mm_32580.1	chr4	110583829	110584029	+	1	NA	NA	NA	186231	NM_030231	78933	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	0.000000	0.273632	
mm_165855.1	chr4	15185299	15185499	+	1	NA	NA	NA	-36268	NM_178617	69352	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	0.010000	0.373134	
mm_3071.1	chr1	134189741	134189941	+	1	NA	NA	NA	-3607	NM_016749	53311	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	0.005000	0.467662	
mm_145611.1	chr18	61105437	61105637	+	1	NA	NA	NA	-35	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.000000	0.487562	
mm_157384.1	chrX	38067229	38067429	-	1	NA	NA	NA	854	NM_001024850	434769	Mm.244139	NM_001024850	ENSMUSG00000053909	Rhox10	-	reproductive homeobox 10	protein-coding	0.035000	0.482587	
mm_130135.1	chr15	90898316	90898516	-	1	NA	NA	NA	60	NR_033583	20738	Mm.431547	NR_033583		Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.020000	0.517413	
mm_61327.1	chr7	68230199	68230399	+	1	NA	NA	NA	33934	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.030000	0.378109	
mm_112544.1	chr13	12133781	12133981	+	1	NA	NA	NA	-26936	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.010000	0.477612	-99(ATCCTTTTAAGG,-,0.00),-97(CCTTTTAAGGAA,+,0.00)
mm_59446.1	chr7	27133262	27133462	+	1	NA	NA	NA	13407	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.025000	0.552239	
mm_132669.1	chr16	42875716	42875916	+	1	NA	NA	NA	-54	NR_040522	75722	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	ENSMUSG00000075070|Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	0.060000	0.557214	
mm_82975.1	chr9	35844111	35844311	-	1	NA	NA	NA	-61	NM_029863	77080	Mm.159846	NM_029863	ENSMUSG00000047980	9230110F15Rik	Pate-A|Pate5|mANLP3	RIKEN cDNA 9230110F15 gene	protein-coding	0.005000	0.477612	
mm_39023.1	chr4	152131694	152131894	-	1	NA	NA	NA	-2869	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.080000	0.696517	
mm_123389.1	chr14	63377785	63377985	-	1	NA	NA	NA	39302	NM_007549	12143	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.000000	0.487562	
mm_150554.1	chr19	39329007	39329207	+	1	NA	NA	NA	42022	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.000000	0.393035	
mm_111453.1	chr12	98385772	98385972	-	1	NA	NA	NA	117237	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.000000	0.432836	
mm_70671.1	chr8	14897993	14898193	+	1	NA	NA	NA	9557	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.010000	0.427861	
mm_40143.1	chr5	35166414	35166614	+	1	NA	NA	NA	-60817	NM_013587	16976	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.015000	0.502488	
mm_96399.1	chr11	67250509	67250709	+	1	NA	NA	NA	12797	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.030000	0.522388	
mm_173187.1	chrX	60426496	60426696	-	1	NA	NA	NA	-22615	NM_001037863	320940	Mm.490394	NM_001001798	ENSMUSG00000062949	Atp11c	A330005H02Rik|AI315324|Ig	ATPase, class VI, type 11C	protein-coding	0.020000	0.417910	
mm_13599.1	chr2	112618345	112618545	+	1	NA	NA	NA	58763	NM_001165935	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.005000	0.447761	
mm_8333.1	chr1	150099448	150099648	-	1	NA	NA	NA	326	NR_015466	320019	Mm.353072	NR_015466	ENSMUSG00000097028	Ptgs2os	7530420F21Rik	prostaglandin-endoperoxide synthase 2, opposite strand	ncRNA	0.025000	0.482587	
mm_170723.1	chr2	150181659	150181859	+	1	NA	NA	NA	4	NM_001145863	100271882		NM_001145863	ENSMUSG00000079009	Gm14139	OTTMUSG00000015769	predicted gene 14139	protein-coding	0.020000	0.532338	
mm_75670.1	chr8	67818202	67818402	-	1	NA	NA	NA	-7	NM_027626	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.030000	0.532338	
mm_87371.1	chr10	44268299	44268499	+	1	NA	NA	NA	60	NM_053069	11793	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0.130000	0.711443	
mm_48368.1	chr5	139473164	139473364	-	1	NA	NA	NA	11227	NM_133349	100494	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.005000	0.512438	
mm_134221.1	chr16	11254157	11254357	-	1	NA	NA	NA	68	NM_001130008	14852	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	0.100000	0.626866	
mm_8191.1	chr1	138101317	138101517	-	1	NA	NA	NA	73709	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.427861	
mm_126980.1	chr15	93441514	93441714	+	1	NA	NA	NA	43150	NM_001285863	223828	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.035000	0.522388	-49(CCCCATAAAAGG,-,0.00)
mm_56442.1	chr6	97459215	97459415	-	1	NA	NA	NA	-29	NM_001346639	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.030000	0.502488	
mm_49761.1	chr6	34774153	34774353	+	1	NA	NA	NA	-6179	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.015000	0.427861	
mm_90549.1	chr10	128096775	128096975	+	1	NA	NA	NA	4092	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.110000	0.751244	
mm_145919.1	chr18	67066512	67066712	+	1	NA	NA	NA	-21686	NM_177137	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.015000	0.512438	
mm_20147.1	chr2	121541864	121542064	-	1	NA	NA	NA	35241	NM_001290986	241627	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	0.005000	0.417910	
mm_109819.1	chr12	3835565	3835765	-	1	NA	NA	NA	26579	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.005000	0.477612	
mm_100426.1	chr11	119448660	119448860	+	1	NA	NA	NA	-42587	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.010000	0.417910	
mm_106461.1	chr11	120046946	120047146	-	1	NA	NA	NA	99	NM_001198785	11302	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0.160000	0.791045	
mm_110208.1	chr12	27342351	27342551	-	1	NA	NA	NA	267	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.120000	0.766169	
mm_111134.1	chr12	81532783	81532983	-	1	NA	NA	NA	28	NM_001309847	105940408		NM_001309847	ENSMUSG00000021139	Synj2bp-cox16	ARIP2a	Synj2bp-cox16 readthrough	protein-coding	0.070000	0.616915	
mm_114559.1	chr13	74350204	74350404	+	1	NA	NA	NA	-13	NM_001168659	67433	Mm.101586	NM_024201	ENSMUSG00000021578	Ccdc127	0610011N22Rik|5430420E17Rik|A430066A18|AI256405|AW050060|C130002N06	coiled-coil domain containing 127	protein-coding	0.105000	0.676617	
mm_144000.1	chr17	88058113	88058313	-	1	NA	NA	NA	7072	NM_001081034	225055	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.000000	0.378109	39(CCTTTAATGTTC,+,0.00)
mm_69928.1	chr7	141950360	141950560	-	1	NA	NA	NA	709	NM_001009929	75770	Mm.274868	NM_029426	ENSMUSG00000053046	Brsk2	4833424K13Rik|SAD-A|SADA	BR serine/threonine kinase 2	protein-coding	0.110000	0.766169	
mm_108886.1	chr12	99971576	99971776	+	1	NA	NA	NA	7177	NM_001164427	217826	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.015000	0.457711	
mm_120457.1	chr14	65970489	65970689	+	1	NA	NA	NA	2106	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.020000	0.542289	-7(GCCTATTAATGA,-,0.00)
mm_41689.1	chr5	100569427	100569627	+	1	NA	NA	NA	2678	NM_139198	231507	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.030000	0.592040	
mm_155002.1	chrX	41400501	41400701	+	1	NA	NA	NA	-700	NM_016886	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding	0.020000	0.447761	-33(TCTTTAAGACGC,+,0.00),3(GACTTTTAAAAA,-,0.00)
mm_143048.1	chr17	56883757	56883957	-	1	NA	NA	NA	8224	NM_030141	78625	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0.040000	0.577114	
mm_135129.1	chr16	35843882	35844082	-	1	NA	NA	NA	27400	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.010000	0.467662	
mm_115999.1	chr13	24414905	24415105	-	1	NA	NA	NA	-117	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.010000	0.482587	
mm_22859.1	chr3	28697807	28698007	+	1	NA	NA	NA	4	NM_031197	20526	Mm.18443	NM_031197	ENSMUSG00000027690	Slc2a2	AI266973|Glut-2|Glut2	solute carrier family 2 (facilitated glucose transporter), member 2	protein-coding	0.000000	0.447761	
mm_34273.1	chr4	141424152	141424352	+	1	NA	NA	NA	3473	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.010000	0.587065	
mm_14682.1	chr2	140055914	140056114	+	1	NA	NA	NA	10791	NM_001159640	75812	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0.000000	0.477612	
mm_2351.1	chr1	92910807	92911007	+	1	NA	NA	NA	82	NM_181405	108657	Mm.200971	NM_181405	ENSMUSG00000026269	Rnpepl1	1110014H17Rik|AI894167	arginyl aminopeptidase (aminopeptidase B)-like 1	protein-coding	0.160000	0.791045	
mm_91981.1	chr10	61680186	61680386	-	1	NA	NA	NA	4	NR_126477	75539		NR_126477		1700022H01Rik	-	RIKEN cDNA 1700022H01 gene	ncRNA	0.125000	0.716418	
mm_155219.1	chrX	56792644	56792844	+	1	NA	NA	NA	6217	NM_001287800	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.010000	0.348259	
mm_17646.1	chr2	31470750	31470950	-	1	NA	NA	NA	542	NR_002687	432466	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.030000	0.606965	
mm_83536.1	chr9	46233124	46233324	-	1	NA	NA	NA	2075	NM_001289833	11814	Mm.390161	NM_023114	ENSMUSG00000032081	Apoc3	apo-CIII|apoC-III	apolipoprotein C-III	protein-coding	0.010000	0.532338	79(GCTTTAAGGGGA,+,0.00)
mm_106141.1	chr11	116494518	116494718	-	1	NA	NA	NA	-4272	NM_026364	67763	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	0.030000	0.547264	
mm_34444.1	chr4	147985946	147986146	+	1	NA	NA	NA	258	NM_001287348	18158	Mm.2740	NM_008726	ENSMUSG00000029019	Nppb	AA408272|BNF|BNP	natriuretic peptide type B	protein-coding	0.020000	0.537313	
mm_164596.1	chr17	27935020	27935220	-	1	NA	NA	NA	25814	NM_181413	224650	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.000000	0.442786	
mm_65182.1	chr7	19696320	19696520	-	1	NA	NA	NA	1978	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.015000	0.552239	
mm_143401.1	chr17	70753414	70753614	-	1	NA	NA	NA	93263	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.010000	0.492537	
mm_146933.1	chr18	32068077	32068277	-	1	NA	NA	NA	443	NM_173441	73473	Mm.66853	NM_173441	ENSMUSG00000024384	Iws1	1700069O15Rik|3000008H23|AL117927|AW214353	IWS1, SUPT6 interacting protein	protein-coding	0.085000	0.666667	-91(TCCCTTTAAAAG,-,0.00),-90(CCCTTTAAAAGC,+,0.00),-90(CCCTTTAAAAGC,-,0.00),-89(CCTTTAAAAGCC,+,0.00)
mm_18220.1	chr2	50297080	50297280	-	1	NA	NA	NA	370	NR_040362	100502624	Mm.382825	NR_040361	ENSMUSG00000085862	Gm13483	OTTMUSG00000012382	predicted gene 13483	ncRNA	0.020000	0.467662	
mm_40322.1	chr5	43901395	43901595	+	1	NA	NA	NA	32686	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.000000	0.482587	
mm_132592.1	chr16	38452714	38452914	+	1	NA	NA	NA	-125	NM_007414	11544	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.100000	0.721393	
mm_30001.1	chr3	135594316	135594516	-	1	NA	NA	NA	97131	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.030000	0.567164	
mm_47096.1	chr5	118063928	118064128	-	1	NA	NA	NA	36204	NM_021344	57816	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	0.005000	0.512438	
mm_142847.1	chr17	51796975	51797175	-	1	NA	NA	NA	14979	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.035000	0.407960	
mm_113327.1	chr13	30788037	30788237	+	1	NA	NA	NA	38904	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.005000	0.477612	
mm_61567.1	chr7	79710270	79710470	+	1	NA	NA	NA	3816	NM_010626	16576	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0.150000	0.721393	
mm_5943.1	chr1	56637371	56637571	-	1	NA	NA	NA	-20	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	0.000000	0.427861	
mm_101151.1	chr11	16779456	16779656	-	1	NA	NA	NA	27353	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.015000	0.432836	
mm_116462.1	chr13	43423328	43423528	-	1	NA	NA	NA	25052	NM_023554	70078	Mm.439927	NM_023554	ENSMUSG00000063200	Nol7	2210008F15Rik|5730556I21Rik|NOP27|RARG-1	nucleolar protein 7	protein-coding	0.005000	0.442786	
mm_60318.1	chr7	44209505	44209705	+	1	NA	NA	NA	2172	NM_010915	18048	Mm.440886	NM_010915	ENSMUSG00000066513	Klk1b4	Ngfa|alpha-NGF|mGk-4	kallikrein 1-related pepidase b4	protein-coding	0.020000	0.532338	
mm_126244.1	chr15	79002245	79002445	+	1	NA	NA	NA	122	NR_105921	102465577		NR_105921	ENSMUSG00000099180	Mir6956	Gm27880|mmu-mir-6956	microRNA 6956	ncRNA	0.055000	0.646766	
mm_56405.1	chr6	97163451	97163651	-	1	NA	NA	NA	-14668	NM_175313	101351	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	0.030000	0.457711	
mm_51731.1	chr6	87038414	87038614	+	1	NA	NA	NA	-4332	NM_013528	14583	Mm.19893	NM_013528	ENSMUSG00000029992	Gfpt1	2810423A18Rik|AI324119|AI449986|GFA|GFAT|GFAT1|GFAT1m|Gfpt	glutamine fructose-6-phosphate transaminase 1	protein-coding	0.010000	0.502488	
mm_24398.1	chr3	90293986	90294186	+	1	NA	NA	NA	23937	NR_105979	102465612		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.035000	0.507463	
mm_51767.1	chr6	88000179	88000379	+	1	NA	NA	NA	18596	NR_026990	434064	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	0.025000	0.527363	
mm_158621.1	chrX	152689364	152689564	-	1	NA	NA	NA	-44916	NM_001290685	110380	Mm.40796	NM_172441	ENSMUSG00000045180	Shroom2	4832440C16|Apxl|C630003H05Rik|Shrm2	shroom family member 2	protein-coding	0.005000	0.432836	
mm_112777.1	chr13	20090373	20090573	+	1	NA	NA	NA	-34	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.115000	0.706468	
mm_59887.1	chr7	30303816	30304016	+	1	NA	NA	NA	-4837	NM_198027	233065	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	0.015000	0.517413	
mm_65085.1	chr7	19260592	19260792	-	1	NA	NA	NA	11162	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.010000	0.601990	
mm_30772.1	chr4	17853363	17853563	+	1	NA	NA	NA	5	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.130000	0.716418	
mm_78654.1	chr9	40450288	40450488	+	1	NA	NA	NA	5376	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.015000	0.527363	
mm_72951.1	chr8	92357694	92357894	+	1	NA	NA	NA	-2	NM_018826	54352	Mm.101153	NM_018826	ENSMUSG00000031737	Irx5	-	Iroquois related homeobox 5 (Drosophila)	protein-coding	0.080000	0.671642	
mm_31001.1	chr4	40159949	40160149	+	1	NA	NA	NA	16784	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.015000	0.363184	
mm_101472.1	chr11	30649392	30649592	-	1	NA	NA	NA	-96	NM_029344	75572	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	0.085000	0.651741	
mm_11574.1	chr2	32916368	32916568	+	1	NA	NA	NA	40334	NM_146119	227737	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.005000	0.467662	-80(CTGTCTAAAAAC,-,0.00)
mm_138831.1	chr17	39848100	39848300	+	1	NA	NA	NA	5203	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.115000	0.621891	
mm_21679.1	chr2	164426096	164426296	-	1	NA	NA	NA	16992	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.040000	0.562189	
mm_77018.1	chr8	108584232	108584432	-	1	NA	NA	NA	345	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.015000	0.487562	
mm_102185.1	chr11	54248387	54248587	-	1	NA	NA	NA	1412	NM_009969	12981	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	0.030000	0.552239	
mm_160500.1	chr9	15306358	15306558	-	1	NA	NA	NA	-10	NM_001199484	70984	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0.115000	0.661692	
mm_87913.1	chr10	62340552	62340752	+	1	NA	NA	NA	45	NR_038038	70162	Mm.441212	NR_038038		Hk1os	2210417K05Rik	hexokinase 1, opposite strand	ncRNA	0.045000	0.587065	
mm_49999.1	chr6	41048191	41048391	+	1	NA	NA	NA	-12782	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.477612	
mm_120299.1	chr14	63138962	63139162	+	1	NA	NA	NA	16600	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.005000	0.477612	
mm_56177.1	chr6	88045129	88045329	-	1	NA	NA	NA	41	NM_001293652	19349	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.115000	0.701493	
mm_96130.1	chr11	60830610	60830810	+	1	NA	NA	NA	79	NM_145428	216820	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.060000	0.532338	
mm_22442.1	chr2	181693616	181693816	-	1	NA	NA	NA	94	NM_001291206	56470	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0.060000	0.621891	
mm_26167.1	chr3	138282536	138282736	+	1	NA	NA	NA	4991	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.020000	0.512438	
mm_173319.1	chrY	90736750	90736950	+	1	NA	NA	NA	18200	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.492537	
mm_41441.1	chr5	90905096	90905296	+	1	NA	NA	NA	1297	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.020000	0.502488	-49(CCTTTAAGATAC,+,0.00)
mm_48183.1	chr5	137412525	137412725	-	1	NA	NA	NA	62516	NM_010144	13846	Mm.34533	NM_010144	ENSMUSG00000029710	Ephb4	AI042935|Htk|MDK2|Myk1|Tyro11	Eph receptor B4	protein-coding	0.025000	0.577114	
mm_74210.1	chr8	123895843	123896043	+	1	NA	NA	NA	-1168	NM_009606	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.020000	0.542289	-35(CTATTTATACCG,+,0.00)
mm_75805.1	chr8	70212158	70212358	-	1	NA	NA	NA	23	NM_001007570	73095	Mm.185413	NM_001007570	ENSMUSG00000002346	Slc25a42	2900084M01Rik	solute carrier family 25, member 42	protein-coding	0.130000	0.771144	
mm_55518.1	chr6	70260862	70261062	-	1	NA	NA	NA	531213	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.407960	
mm_92100.1	chr10	63017500	63017700	-	1	NA	NA	NA	2700	NM_001347457	432467	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	0.010000	0.368159	
mm_106707.1	chr12	3806454	3806654	+	1	NA	NA	NA	-426	NM_007872	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.100000	0.771144	
mm_136511.1	chr16	97170729	97170929	-	1	NA	NA	NA	-94	NM_031174	13508	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	Down syndrome cell adhesion molecule	protein-coding	0.090000	0.696517	15(GCTTTAAGACTG,+,0.00)
mm_145999.1	chr18	68344681	68344881	+	1	NA	NA	NA	7178	NM_013596	17203	Mm.8003	NM_013596	ENSMUSG00000007480	Mc5r	-	melanocortin 5 receptor	protein-coding	0.015000	0.507463	
mm_11659.1	chr2	35109410	35109610	+	1	NA	NA	NA	18	NM_012018	26920	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.100000	0.681592	
mm_53734.1	chr6	145121742	145121942	+	1	NA	NA	NA	103	NM_008511	16970	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.030000	0.517413	
mm_170832.1	chr2	177000806	177001006	+	1	NA	NA	NA	-73093	NM_001305133	102639598	Mm.379980	NM_029813	ENSMUSG00000074527	Gm14296	-	predicted gene 14296	protein-coding	0.015000	0.507463	
mm_77089.1	chr8	110793473	110793673	-	1	NA	NA	NA	12351	NM_029646	76527	Mm.77697	NM_029646	ENSMUSG00000031750	Il34	2010004A03Rik|AI593503	interleukin 34	protein-coding	0.015000	0.582090	
mm_7883.1	chr1	133030483	133030683	-	1	NA	NA	NA	4	NM_001302802	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	0.010000	0.467662	
mm_30238.1	chr3	146378844	146379044	-	1	NA	NA	NA	0	NR_033542	100038607	Mm.365888	NR_033542	ENSMUSG00000105602	Gm10636	ENSMUSG00000074175	predicted gene 10636	ncRNA	0.015000	0.497512	
mm_130957.1	chr15	103310335	103310535	-	1	NA	NA	NA	3	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.005000	0.472637	25(CCCTAGAAAAGC,-,0.00)
mm_37839.1	chr4	132075171	132075371	-	1	NA	NA	NA	42	NM_001128607	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.065000	0.701493	0(ACCTCTTAAAGG,-,0.00),1(CCTCTTAAAGGG,+,0.00)
mm_88018.1	chr10	67185649	67185849	+	1	NA	NA	NA	-1	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.035000	0.507463	
mm_135301.1	chr16	38703589	38703789	-	1	NA	NA	NA	9346	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.025000	0.592040	
mm_164787.1	chr18	10706635	10706835	-	1	NA	NA	NA	-39	NM_134130	106861	Mm.273108	NM_134130	ENSMUSG00000002475	Abhd3	AA675331|LABH3	abhydrolase domain containing 3	protein-coding	0.115000	0.731343	
mm_79430.1	chr9	55948081	55948281	+	1	NA	NA	NA	-10066	NM_001081341	244891	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	0.000000	0.378109	
mm_40811.1	chr5	71699865	71700065	+	1	NA	NA	NA	-51	NM_008069	14400	Mm.38567	NM_008069	ENSMUSG00000029212	Gabrb1	AW061132|B230208N19Rik|Gabrb-1	gamma-aminobutyric acid (GABA) A receptor, subunit beta 1	protein-coding	0.040000	0.467662	
mm_122446.1	chr14	45295770	45295970	-	1	NA	NA	NA	22702	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.005000	0.318408	
mm_60612.1	chr7	44590819	44591019	+	1	NA	NA	NA	33	NM_001290682	16504	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.100000	0.736318	
mm_58065.1	chr6	136875703	136875903	-	1	NA	NA	NA	20	NM_008597	17313	Mm.243085	NM_008597	ENSMUSG00000030218	Mgp	Mglap	matrix Gla protein	protein-coding	0.020000	0.611940	-35(TCCTATAAAAAC,-,0.00)
mm_9808.1	chr1	181937106	181937306	-	1	NA	NA	NA	82774	NM_008680	13800	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	enabled homolog (Drosophila)	protein-coding	0.005000	0.437811	
mm_30409.1	chr3	152255244	152255444	-	1	NA	NA	NA	10976	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.010000	0.402985	
mm_37787.1	chr4	130279124	130279324	-	1	NA	NA	NA	-3638	NM_172702	230779	Mm.45132	NM_172702	ENSMUSG00000023232	Serinc2	2310004K20Rik|AW121759|FKSG84|TDE2|Tde2l	serine incorporator 2	protein-coding	0.005000	0.547264	
mm_55667.1	chr6	72521573	72521773	-	1	NA	NA	NA	-22718	NM_007599	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.005000	0.537313	
mm_106937.1	chr12	8674306	8674506	+	1	NA	NA	NA	147	NM_001160220	80913	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.110000	0.721393	
mm_23260.1	chr3	51415915	51416115	+	1	NA	NA	NA	-1	NM_053089	74838	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0.095000	0.651741	
mm_127278.1	chr15	99821050	99821250	+	1	NA	NA	NA	-1001	NM_023063	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.000000	0.487562	
mm_138987.1	chr17	45495648	45495848	+	1	NA	NA	NA	-11093	NM_198608	224805	Mm.329063	NM_198608	ENSMUSG00000023938	Aars2	Aarsl|AlaRS|Gm89	alanyl-tRNA synthetase 2, mitochondrial	protein-coding	0.020000	0.517413	
mm_5540.1	chr1	38320166	38320366	-	1	NA	NA	NA	-190604	NM_019570	56210	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	0.015000	0.283582	-26(ATGTTTAAAAGC,-,0.00)
mm_111114.1	chr12	80960514	80960714	-	1	NA	NA	NA	7465	NM_011387	20493	Mm.486361	NM_011387	ENSMUSG00000021135	Slc10a1	Ntcp	solute carrier family 10 (sodium/bile acid cotransporter family), member 1	protein-coding	0.015000	0.462687	
mm_120289.1	chr14	63135399	63135599	+	1	NA	NA	NA	13037	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.477612	
mm_58818.1	chr7	16420875	16421075	+	1	NA	NA	NA	19779	NM_198631	330474	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.030000	0.517413	
mm_106943.1	chr12	8750034	8750234	+	1	NA	NA	NA	-21262	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.000000	0.288557	-57(GTTTTTAAAGGG,+,0.00),-57(GTTTTTAAAGGG,-,0.00),74(CCTTTTATAACA,+,0.00)
mm_24379.1	chr3	90248428	90248628	+	1	NA	NA	NA	336	NM_013901	30791	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0.025000	0.527363	
mm_110726.1	chr12	69683605	69683805	-	1	NA	NA	NA	-1853	NM_001135559	20663	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	son of sevenless homolog 2 (Drosophila)	protein-coding	0.035000	0.452736	-39(TTCTATAAAGAG,-,0.00)
mm_48872.1	chr5	150594414	150594614	-	1	NA	NA	NA	11	NM_133898	100637	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.070000	0.666667	
mm_83412.1	chr9	44802880	44803080	-	1	NA	NA	NA	-29	NM_138951	192653	Mm.325487	NM_138951	ENSMUSG00000039438	Ttc36	-	tetratricopeptide repeat domain 36	protein-coding	0.015000	0.547264	
mm_113799.1	chr13	46420039	46420239	+	1	NA	NA	NA	1839	NM_001081425	666794	Mm.38269	NM_001081425	ENSMUSG00000038132	Rbm24	6330546B05Rik|AI606861	RNA binding motif protein 24	protein-coding	0.010000	0.462687	
mm_155465.1	chrX	73608360	73608560	+	1	NA	NA	NA	-30981	NM_029352	75590	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	0.005000	0.487562	-68(GGCCTTATAGGA,-,0.00)
mm_136967.1	chr17	15706482	15706682	+	1	NA	NA	NA	1615	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.025000	0.348259	
mm_58145.1	chr6	142186049	142186249	-	1	NA	NA	NA	0	NM_023718	28254	Mm.38953	NM_023718	ENSMUSG00000079262	Slco1a6	4930422F19Rik|AI790453|Oatp-5|Oatp5|Slc21a13	solute carrier organic anion transporter family, member 1a6	protein-coding	0.000000	0.442786	
mm_137470.1	chr17	26676336	26676536	+	1	NA	NA	NA	40	NM_025272	11974	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.120000	0.656716	
mm_140069.1	chr17	75005444	75005644	+	1	NA	NA	NA	15	NM_019919	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.080000	0.626866	-23(CTTTTAAAAGAC,+,0.00)
mm_7253.1	chr1	93754520	93754720	-	1	NA	NA	NA	218	NM_025920	67026	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	0.170000	0.776119	
mm_96765.1	chr11	69919813	69920013	+	1	NA	NA	NA	717	NM_001166590	276770	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.025000	0.522388	
mm_133492.1	chr16	90385780	90385980	+	1	NA	NA	NA	-517	NM_015755	26559	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.130000	0.711443	
mm_97506.1	chr11	78498916	78499116	+	1	NA	NA	NA	-104	NM_011707	22370	Mm.3667	NM_011707	ENSMUSG00000017344	Vtn	AI256434|Vn	vitronectin	protein-coding	0.025000	0.502488	-34(CTTTATAAAAAG,-,0.00)
mm_121278.1	chr14	103699418	103699618	+	1	NA	NA	NA	-86	NR_045148	70898	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0.015000	0.577114	
mm_38408.1	chr4	139092868	139093068	-	1	NA	NA	NA	2	NM_008675	17965	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	0.135000	0.786070	
mm_83491.1	chr9	45945825	45946025	-	1	NA	NA	NA	-6335	NR_106055	102465659		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.030000	0.601990	
mm_61622.1	chr7	80186821	80187021	+	1	NA	NA	NA	80	NM_013659	20352	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.100000	0.681592	
mm_103254.1	chr11	70982866	70983066	-	1	NA	NA	NA	60	NM_007573	12261	Mm.30049	NM_007573	ENSMUSG00000018446	C1qbp	AA407365|AA986492|D11Wsu182e|HABP1|P32|gC1qBP	complement component 1, q subcomponent binding protein	protein-coding	0.140000	0.756219	
mm_154712.1	chrX	8892349	8892549	+	1	NA	NA	NA	96	NR_045448	102941	Mm.41588	NM_175327	ENSMUSG00000052364	B630019K06Rik	AI843180	novel protein similar to F-box and leucine-rich repeat protein 17 (Fbxl17)	pseudo	0.075000	0.661692	
mm_53667.1	chr6	141632325	141632525	+	1	NA	NA	NA	2907	NM_020495	28253	Mm.272223	NM_020495	ENSMUSG00000030236	Slco1b2	7330442B20Rik|OATP-C|OATP2|Oatp1b2|Oatp4|Slc21a10|Slc21a6|lst-1|mlst-1	solute carrier organic anion transporter family, member 1b2	protein-coding	0.005000	0.358209	-71(CTTTTTATACAT,+,0.00)
mm_147071.1	chr18	35214955	35215155	-	1	NA	NA	NA	-31	NM_178005	107065	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0.035000	0.457711	-6(GCCTATATACAG,+,0.00)
mm_168148.1	chr10	36162585	36162785	+	1	NA	NA	NA	-344122	NM_001253355	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0.015000	0.383085	
mm_77040.1	chr8	109575307	109575507	-	1	NA	NA	NA	3765	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.050000	0.587065	
mm_47283.1	chr5	122106698	122106898	-	1	NA	NA	NA	5818	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.020000	0.522388	
mm_156418.1	chrX	140907422	140907622	+	1	NA	NA	NA	-86	NM_030181	78789	Mm.244932	NM_026103	ENSMUSG00000031430	Vsig1	1700062D20Rik|4930405J24Rik	V-set and immunoglobulin domain containing 1	protein-coding	0.020000	0.447761	
mm_90782.1	chr10	6980368	6980568	-	1	NA	NA	NA	-3	NM_001170801	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.020000	0.457711	
mm_77045.1	chr8	109575685	109575885	-	1	NA	NA	NA	3387	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.045000	0.557214	
mm_166214.1	chr5	54959207	54959407	+	1	NA	NA	NA	609315	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA	0.020000	0.432836	
mm_75575.1	chr8	60965355	60965555	-	1	NA	NA	NA	-10656	NM_173876	12725	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0.025000	0.492537	-30(GACTTTAAAAGA,-,0.00),-29(ACTTTAAAAGAG,+,0.00)
mm_158377.1	chrX	135210677	135210877	-	1	NA	NA	NA	-90	NM_025355	66104	Mm.336239	NM_025355	ENSMUSG00000031409	Tceal6	1500026B10Rik	transcription elongation factor A (SII)-like 6	protein-coding	0.015000	0.557214	
mm_157870.1	chrX	75416419	75416619	-	1	NA	NA	NA	65	NM_010839	105886298	Mm.16366	NM_010839	ENSMUSG00000090110	Cmc4	Mtcp1nb|p8MTCP1	C-x(9)-C motif containing 4	protein-coding	0.075000	0.686567	
mm_1255.1	chr1	63113023	63113223	+	1	NA	NA	NA	1144	NM_001081436	227195	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584|OTTMUSG00000002594	INO80 complex subunit D	protein-coding	0.025000	0.587065	
mm_144614.1	chr18	32816930	32817130	+	1	NA	NA	NA	170	NR_033206	53603	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	0.020000	0.472637	
mm_81813.1	chr9	118040438	118040638	+	1	NA	NA	NA	16	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.105000	0.661692	-38(CCCTATATAGTC,+,0.00)
mm_45890.1	chr5	88554058	88554258	-	1	NA	NA	NA	-325	NM_023054	65961	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	0.105000	0.636816	
mm_131423.1	chr16	14708119	14708319	+	1	NA	NA	NA	2360	NM_011415	20583	Mm.4272	NM_011415	ENSMUSG00000022676	Snai2	Slug|Slugh|Snail2	snail family zinc finger 2	protein-coding	0.010000	0.482587	
mm_101800.1	chr11	46253904	46254104	-	1	NA	NA	NA	18447	NM_177075	320116	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	0.030000	0.512438	
mm_100808.1	chr11	5079697	5079897	-	1	NA	NA	NA	-14470	NM_001190406	78926	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0.000000	0.427861	
mm_142339.1	chr17	43591357	43591557	-	1	NA	NA	NA	52	NR_045445	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.015000	0.462687	
mm_31954.1	chr4	86823807	86824007	+	1	NA	NA	NA	33460	NM_009096	20104	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	0.005000	0.313433	
mm_148098.1	chr18	73948780	73948980	-	1	NA	NA	NA	-69027	NR_045390	77855	Mm.410760	NR_045390	ENSMUSG00000090263	D730045A05Rik	-	RIKEN cDNA D730045A05 gene	ncRNA	0.025000	0.532338	
mm_9362.1	chr1	172198411	172198611	-	1	NA	NA	NA	8293	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.030000	0.557214	
mm_74720.1	chr8	17419618	17419818	-	1	NA	NA	NA	115667	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.005000	0.353234	
mm_1898.1	chr1	85709356	85709556	+	1	NA	NA	NA	27150	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.010000	0.492537	
mm_108431.1	chr12	82245711	82245911	+	1	NA	NA	NA	-65538	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.010000	0.437811	-33(GCCCATTAGAGC,-,0.00)
mm_99168.1	chr11	100736129	100736329	+	1	NA	NA	NA	1986	NM_024456	19345	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0.020000	0.567164	
mm_91888.1	chr10	59950122	59950322	-	1	NA	NA	NA	1548	NM_029083	74747	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.010000	0.552239	
mm_95775.1	chr11	54909528	54909728	+	1	NA	NA	NA	6774	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.035000	0.611940	
mm_139925.1	chr17	71019390	71019590	+	1	NA	NA	NA	-67	NM_010867	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.000000	0.532338	-34(GGCCATAAAAGG,-,0.00)
mm_131374.1	chr16	13903082	13903282	+	1	NA	NA	NA	21	NM_001289562	93734	Mm.76554	NM_033564	ENSMUSG00000022679	Mpv17l	M-LP	Mpv17 transgene, kidney disease mutant-like	protein-coding	0.095000	0.666667	38(CCGTCTATAGGG,-,0.00)
mm_87220.1	chr10	40300865	40301065	+	1	NA	NA	NA	1221	NM_007444	100041585	Mm.476925	NM_007444	ENSMUSG00000063953	Amd2	AdoMetDC|Amd1|Amd3|ENSMUSG00000063953	S-adenosylmethionine decarboxylase 2	protein-coding	0.090000	0.671642	
mm_99932.1	chr11	111023762	111023962	+	1	NA	NA	NA	2	NM_001252208	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.010000	0.447761	
mm_11364.1	chr2	30965743	30965943	+	1	NA	NA	NA	2075	NM_144884	30931	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0.020000	0.497512	
mm_131873.1	chr16	23179040	23179240	+	1	NA	NA	NA	32604	NM_009605	11450	Mm.3969	NM_009605	ENSMUSG00000022878	Adipoq	30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1	adiponectin, C1Q and collagen domain containing	protein-coding	0.020000	0.512438	
mm_105324.1	chr11	102894439	102894639	-	1	NA	NA	NA	2661	NM_001131020	14580	Mm.1239	NM_010277	ENSMUSG00000020932	Gfap	AI836096	glial fibrillary acidic protein	protein-coding	0.040000	0.562189	
mm_142934.1	chr17	56000156	56000356	-	1	NA	NA	NA	5350	NM_145934	106766	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	0.035000	0.631841	
mm_2332.1	chr1	92831588	92831788	+	1	NA	NA	NA	2	NM_016696	14733	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.170000	0.815920	
mm_111783.1	chr12	104473270	104473470	-	1	NA	NA	NA	-134	NM_010351	14836	Mm.129	NM_010351	ENSMUSG00000021095	Gsc	-	goosecoid homeobox	protein-coding	0.080000	0.597015	
mm_128865.1	chr15	72810214	72810414	-	1	NA	NA	NA	10	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.040000	0.547264	
mm_146513.1	chr18	3337530	3337730	-	1	NA	NA	NA	-41	NM_001110852	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.080000	0.611940	
mm_160114.1	chr7	26534968	26535168	+	1	NA	NA	NA	45	NM_001048219	233001	Mm.11889	NM_194056	ENSMUSG00000054102	Nlrp9a	D7Ertd565e|Nalp-theta|Nalp9a	NLR family, pyrin domain containing 9A	protein-coding	0.005000	0.437811	
mm_88723.1	chr10	80171249	80171449	+	1	NA	NA	NA	-1595	NM_027207	69770	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0.035000	0.477612	
mm_126584.1	chr15	82293999	82294199	+	1	NA	NA	NA	-4885	NM_029066	74716	Mm.159315	NM_029066	ENSMUSG00000022455	Wbp2nl	4930521I23Rik|PAWP	WBP2 N-terminal like	protein-coding	0.005000	0.452736	-29(CCTTTTATACAT,+,0.00)
mm_127252.1	chr15	99699800	99700000	+	1	NA	NA	NA	-2387	NM_031842	83797	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.025000	0.577114	
mm_68708.1	chr7	119861745	119861945	-	1	NA	NA	NA	33613	NM_173408	233805	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0.005000	0.592040	
mm_65852.1	chr7	29281825	29282025	-	1	NA	NA	NA	52	NM_001082548	20733	Mm.295230	NM_011464	ENSMUSG00000074227	Spint2	AL024025|C76321|HAI-2	serine protease inhibitor, Kunitz type 2	protein-coding	0.090000	0.686567	
mm_47758.1	chr5	131307790	131307990	-	1	NA	NA	NA	-368	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.095000	0.696517	
mm_21923.1	chr2	166950802	166951002	-	1	NA	NA	NA	13815	NR_111895	20853	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen (RNA binding protein) homolog 1 (Drosophila)	protein-coding	0.035000	0.532338	
mm_39909.1	chr5	31297500	31297700	+	1	NA	NA	NA	19	NM_144909	231103	Mm.100043	NM_144909	ENSMUSG00000059434	Gckr	GKRP	glucokinase regulatory protein	protein-coding	0.020000	0.527363	
mm_7471.1	chr1	120488472	120488672	-	1	NA	NA	NA	16512	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.005000	0.537313	
mm_68278.1	chr7	105599213	105599413	-	1	NA	NA	NA	803	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.015000	0.537313	
mm_1831.1	chr1	82724826	82725026	+	1	NA	NA	NA	36	NM_001310699	75734	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	0.130000	0.676617	
mm_138594.1	chr17	35509982	35510182	+	1	NA	NA	NA	1275	NM_001252452	18999	Mm.17031	NM_013633	ENSMUSG00000024406	Pou5f1	NF-A3|Oct-3|Oct-3/4|Oct-4|Oct3|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4	POU domain, class 5, transcription factor 1	protein-coding	0.030000	0.542289	
mm_147893.1	chr18	65220726	65220926	-	1	NA	NA	NA	-28035	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.020000	0.517413	
mm_148240.1	chr18	80608369	80608569	-	1	NA	NA	NA	-63923	NR_028424	100039348	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.020000	0.562189	
mm_148433.1	chr19	3942283	3942483	+	1	NA	NA	NA	7197	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.030000	0.597015	
mm_31522.1	chr4	54947429	54947629	+	1	NA	NA	NA	-416	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.040000	0.601990	
mm_102388.1	chr11	58938787	58938987	-	1	NA	NA	NA	19	NM_022423	108660	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	0.150000	0.751244	
mm_79121.1	chr9	46913377	46913577	+	1	NA	NA	NA	-126	NR_015605	73040	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA	0.010000	0.567164	
mm_5346.1	chr1	24943068	24943268	-	1	NA	NA	NA	264250	NM_001310483	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.020000	0.368159	
mm_172021.1	chr6	115808619	115808819	-	1	NA	NA	NA	24	NM_172086	19951	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	0.120000	0.671642	
mm_130711.1	chr15	100738287	100738487	-	1	NA	NA	NA	-5650	NR_045782	619313	Mm.123436	NR_045781		I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	0.020000	0.527363	-78(CGCCTTATAAGG,-,0.00),-76(CCTTATAAGGAA,+,0.00)
mm_159906.1	chr6	42817182	42817382	+	1	NA	NA	NA	-191	NM_146445	258437	Mm.347658	NM_146445	ENSMUSG00000054431	Olfr450	MOR257-3	olfactory receptor 450	protein-coding	0.000000	0.308458	8(TGCCATTTAAGG,-,0.00)
mm_25816.1	chr3	127791172	127791372	+	1	NA	NA	NA	1359	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.030000	0.462687	-33(CCCTTTAAACCG,+,0.00)
mm_91830.1	chr10	56982001	56982201	-	1	NA	NA	NA	504252	NR_045353	74928	Mm.416643	NR_045353	ENSMUSG00000097370	4930467K11Rik	-	RIKEN cDNA 4930467K11 gene	ncRNA	0.000000	0.358209	-33(GTGTTTTAAAAC,-,0.00)
mm_162012.1	chr19	44237512	44237712	+	1	NA	NA	NA	34324	NM_024450	30049	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	0.030000	0.597015	52(CCTTTTATAGTG,+,0.00)
mm_83343.1	chr9	44288271	44288471	-	1	NA	NA	NA	-127	NM_138955	192663	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP-binding cassette, sub-family G (WHITE), member 4	protein-coding	0.065000	0.616915	-36(GGCCCTTTAAGA,-,0.00),-35(GCCCTTTAAGAG,-,0.00),-34(CCCTTTAAGAGC,+,0.00),-34(CCCTTTAAGAGC,-,0.00),-33(CCTTTAAGAGCA,+,0.00)
mm_170483.1	chr19	14791859	14792059	-	1	NA	NA	NA	-193776	NM_001302947	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.060000	0.512438	
mm_82763.1	chr9	26911717	26911917	-	1	NA	NA	NA	11264	NM_001281475	382064	Mm.335028	NM_001177509	ENSMUSG00000079644	Gm1110	-	predicted gene 1110	protein-coding	0.000000	0.338308	
mm_105530.1	chr11	106300767	106300967	-	1	NA	NA	NA	1029	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.030000	0.552239	
mm_24576.1	chr3	93444576	93444776	+	1	NA	NA	NA	2346	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.070000	0.651741	
mm_155770.1	chrX	96255460	96255660	+	1	NA	NA	NA	12743	NR_029801	723814		NR_029801	ENSMUSG00000076066	Mir223	Mirn223|miR-223|mmu-mir-223	microRNA 223	ncRNA	0.000000	0.378109	
mm_70386.1	chr8	10483993	10484193	+	1	NA	NA	NA	330182	NM_001319151	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.015000	0.477612	
mm_105026.1	chr11	100472680	100472880	-	1	NA	NA	NA	2	NM_172565	217194	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	0.135000	0.691542	
mm_136793.1	chr17	12092611	12092811	+	1	NA	NA	NA	-26573	NM_026644	68262	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.010000	0.452736	-14(TTTTTTAAAGCC,+,0.00)
mm_119193.1	chr14	32513458	32513658	+	1	NA	NA	NA	37	NM_001081221	319955	Mm.318310	NM_177043	ENSMUSG00000054051	Ercc6	4732403I04|C130058G22Rik|CSB	excision repair cross-complementing rodent repair deficiency, complementation group 6	protein-coding	0.110000	0.661692	
mm_29581.1	chr3	117321903	117322103	-	1	NA	NA	NA	38873	NM_177664	229791	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	0.055000	0.567164	81(GGGCTTATAAGG,-,0.00),83(GCTTATAAGGAT,+,0.00)
mm_103020.1	chr11	69734881	69735081	-	1	NA	NA	NA	23652	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.010000	0.532338	
mm_116359.1	chr13	40728843	40729043	-	1	NA	NA	NA	1135	NR_125899	102633805		NR_125899	ENSMUSG00000097752	Gm26688	Tfap2a-as1	predicted gene, 26688	ncRNA	0.010000	0.417910	
mm_169907.1	chr16	54511803	54512003	+	1	NA	NA	NA	771334	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0.005000	0.452736	
mm_121535.1	chr14	122375142	122375342	+	1	NA	NA	NA	75873	NR_033325	328479	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.015000	0.472637	74(TCCTTTTTAAGG,-,0.00),76(CTTTTTAAGGTC,+,0.00)
mm_105857.1	chr11	113751695	113751895	-	1	NA	NA	NA	20	NM_001163346	56699	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.080000	0.686567	
mm_172778.1	chr8	95825291	95825491	+	1	NA	NA	NA	-17929	NM_001205226	234594	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	0.080000	0.587065	
mm_83914.1	chr9	56417971	56418171	-	1	NA	NA	NA	-21	NM_172924	244895	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	0.120000	0.686567	
mm_145826.1	chr18	65437313	65437513	+	1	NA	NA	NA	6416	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.005000	0.467662	
mm_46367.1	chr5	103425655	103425855	-	1	NA	NA	NA	563	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.070000	0.611940	
mm_106049.1	chr11	116080247	116080447	-	1	NA	NA	NA	-2386	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.020000	0.582090	
mm_130077.1	chr15	89373783	89373983	-	1	NA	NA	NA	-65	NM_001111288	100126824	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	0.070000	0.631841	
mm_59870.1	chr7	30231942	30232142	+	1	NA	NA	NA	-13	NM_025548	66411	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	0.085000	0.592040	
mm_19515.1	chr2	93984761	93984961	-	1	NA	NA	NA	4827	NR_045827	70852	Mm.437014	NR_045827	ENSMUSG00000027196	Alkbh3os1	4921507L20Rik	alkB homolog 3, opposite strand 1	ncRNA	0.010000	0.477612	
mm_6451.1	chr1	74014573	74014773	-	1	NA	NA	NA	109774	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.015000	0.557214	
mm_110397.1	chr12	44209969	44210169	-	1	NA	NA	NA	-1	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.135000	0.721393	-37(GGCTCTATAAGC,-,0.00)
mm_38939.1	chr4	150197274	150197474	-	1	NA	NA	NA	3761	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.035000	0.547264	
mm_85079.1	chr9	91364851	91365051	-	1	NA	NA	NA	848	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.110000	0.681592	
mm_137377.1	chr17	25717420	25717620	+	1	NA	NA	NA	348	NM_022422	64337	Mm.171123	NM_022422	ENSMUSG00000025739	Gng13	1500031D04Rik|AB030194|Ggamma13	guanine nucleotide binding protein (G protein), gamma 13	protein-coding	0.150000	0.786070	
mm_16601.1	chr2	5062849	5063049	-	1	NA	NA	NA	989	NM_181848	71648	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0.035000	0.517413	
mm_66269.1	chr7	36695972	36696172	-	1	NA	NA	NA	-2046	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.090000	0.671642	
mm_173231.1	chrX	79744164	79744364	+	1	NA	NA	NA	-72829	NM_028025	71967	Mm.379207	NM_028025	ENSMUSG00000046942	Mageb16	2410003J06Rik	melanoma antigen family B, 16	protein-coding	0.045000	0.636816	
mm_149258.1	chr19	10525178	10525378	+	1	NA	NA	NA	34	NM_172302	269061	Mm.490260	NM_172302	ENSMUSG00000034820	Cpsf7	5730453I16Rik|AL022757|C330017N18Rik	cleavage and polyadenylation specific factor 7	protein-coding	0.160000	0.776119	
mm_98080.1	chr11	86544931	86545131	+	1	NA	NA	NA	40	NM_001199046	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding	0.060000	0.452736	
mm_16460.1	chr2	180598123	180598323	+	1	NA	NA	NA	1	NM_009936	12841	Mm.141312	NM_009936	ENSMUSG00000027570	Col9a3	AV006866	collagen, type IX, alpha 3	protein-coding	0.100000	0.776119	
mm_166952.1	chr7	44219162	44219362	+	1	NA	NA	NA	2788	NM_008456	16622	Mm.443373	NM_008456	ENSMUSG00000066512	Klk1b5	Klk5|kallikrein|mGK-5	kallikrein 1-related peptidase b5	protein-coding	0.000000	0.542289	
mm_2748.1	chr1	128705336	128705536	+	1	NA	NA	NA	-113137	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.005000	0.467662	
mm_31671.1	chr4	60005818	60006018	+	1	NA	NA	NA	2369	NM_001081285	620807	Mm.464562	NM_001081285	ENSMUSG00000078689	Mup6	Gm12544|Mup2|OTTMUSG00000007423	major urinary protein 6	protein-coding	0.010000	0.432836	
mm_160379.1	chr8	41293386	41293586	+	1	NA	NA	NA	53727	NM_023662	18536	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	0.005000	0.328358	-100(CTATTTATGGAG,+,0.00)
mm_140782.1	chr17	17889632	17889832	-	1	NA	NA	NA	1908	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.000000	0.422886	
mm_47198.1	chr5	120812389	120812589	-	1	NA	NA	NA	25	NM_033541	114643	Mm.43230	NM_033541	ENSMUSG00000001166	Oas1c	Oasl2|Oasl5	2'-5' oligoadenylate synthetase 1C	protein-coding	0.040000	0.502488	
mm_10853.1	chr2	25025513	25025713	+	1	NA	NA	NA	-28766	NM_001177654	56876	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.000000	0.348259	
mm_74650.1	chr8	13390001	13390201	-	1	NA	NA	NA	6677	NM_009724	11945	Mm.154039	NM_009724	ENSMUSG00000031449	Atp4b	AV080843	ATPase, H+/K+ exchanging, beta polypeptide	protein-coding	0.020000	0.522388	
mm_77630.1	chr8	124021302	124021502	-	1	NA	NA	NA	-93	NM_133966	102162	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	0.175000	0.756219	
mm_79687.1	chr9	60334006	60334206	+	1	NA	NA	NA	176929	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.005000	0.497512	
mm_155063.1	chrX	42502384	42502584	+	1	NA	NA	NA	-81	NM_011364	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	0.005000	0.462687	
mm_24048.1	chr3	87906222	87906422	+	1	NA	NA	NA	1	NM_008231	15191	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0.120000	0.701493	
mm_148727.1	chr19	5848529	5848729	+	1	NA	NA	NA	-3149	NR_003513	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.045000	0.557214	
mm_40403.1	chr5	53037983	53038183	+	1	NA	NA	NA	-11270	NM_011402	20531	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	0.015000	0.512438	-35(CTGTATAAAAGC,-,0.00)
mm_55202.1	chr6	52208500	52208700	-	1	NA	NA	NA	24	NM_010454	15403	Mm.222030	NM_010454	ENSMUSG00000043219	Hoxa6	Hox-1.2	homeobox A6	protein-coding	0.045000	0.552239	
mm_30047.1	chr3	136103424	136103624	-	1	NA	NA	NA	222542	NM_001310749	242248	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0.005000	0.318408	
mm_1171.1	chr1	60914542	60914742	+	1	NA	NA	NA	5617	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.005000	0.358209	-54(GCCTTTTAAAAA,-,0.00),-53(CCTTTTAAAAAA,+,0.00)
mm_151932.1	chr19	5800196	5800396	-	1	NA	NA	NA	2376	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.015000	0.442786	
mm_11903.1	chr2	50303184	50303384	+	1	NA	NA	NA	6474	NR_040362	100502624	Mm.382825	NR_040361	ENSMUSG00000085862	Gm13483	OTTMUSG00000012382	predicted gene 13483	ncRNA	0.005000	0.402985	
mm_119953.1	chr14	55055569	55055769	+	1	NA	NA	NA	17207	NR_073535	100151693	Mm.378403	NR_073535	ENSMUSG00000072492	Gm10364	EG545052|ENSMUSG00000072492	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.010000	0.547264	
mm_68866.1	chr7	126416614	126416814	-	1	NA	NA	NA	-1844	NM_009844	12478	Mm.4360	NM_009844	ENSMUSG00000030724	Cd19	AW495831	CD19 antigen	protein-coding	0.005000	0.487562	
mm_42583.1	chr5	117318986	117319186	+	1	NA	NA	NA	-180	NM_001033311	231668	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	0.115000	0.736318	
mm_157564.1	chrX	52310009	52310209	-	1	NA	NA	NA	68072	NR_105805	102465202		NR_105805	ENSMUSG00000105738	Mir6384	mmu-mir-6384	microRNA 6384	ncRNA	0.000000	0.313433	
mm_27780.1	chr3	73708233	73708433	-	1	NA	NA	NA	82	NM_009738	12038	Mm.250719	NM_009738	ENSMUSG00000027792	Bche	C730038G20Rik	butyrylcholinesterase	protein-coding	0.030000	0.587065	
mm_132142.1	chr16	31948533	31948733	+	1	NA	NA	NA	87	NM_026554	68092	Mm.290027	NM_026554	ENSMUSG00000022774	Ncbp2	20kDa|5930413E18Rik|AA536802|AI843301|C79367	nuclear cap binding protein subunit 2	protein-coding	0.120000	0.646766	
mm_158277.1	chrX	111463364	111463564	-	1	NA	NA	NA	74495	NM_025949	67071	Mm.37617	NM_025949	ENSMUSG00000025665	Rps6ka6	2610524K04Rik|RSK4|S6K-alpha-6	ribosomal protein S6 kinase polypeptide 6	protein-coding	0.100000	0.706468	
mm_18278.1	chr2	52424701	52424901	-	1	NA	NA	NA	73	NM_182994	75423	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.175000	0.805970	
mm_22089.1	chr2	168767061	168767261	-	1	NA	NA	NA	40	NM_201395	99377	Mm.434054	NM_175303	ENSMUSG00000027547	Sall4	5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20	sal-like 4 (Drosophila)	protein-coding	0.030000	0.487562	
mm_45899.1	chr5	88676020	88676220	-	1	NA	NA	NA	51	NM_178700	231413	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.135000	0.786070	
mm_98303.1	chr11	90032930	90033130	+	1	NA	NA	NA	2682	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.025000	0.497512	
mm_93495.1	chr10	112160226	112160426	-	1	NA	NA	NA	-3295	NM_001310675	353025	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	0.020000	0.482587	
mm_49705.1	chr6	34384183	34384383	+	1	NA	NA	NA	36	NM_172398	67861	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	0.045000	0.582090	
mm_33474.1	chr4	130818566	130818766	+	1	NA	NA	NA	26129	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.040000	0.621891	
mm_124886.1	chr15	10268904	10269104	+	1	NA	NA	NA	-24647	NM_001253782	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.005000	0.383085	
mm_14397.1	chr2	130012243	130012443	+	1	NA	NA	NA	3	NM_009374	21818	Mm.2961	NM_009374	ENSMUSG00000027401	Tgm3	AI893889|TG E|TG(E)|TGE|TGase E|TGase-3|we	transglutaminase 3, E polypeptide	protein-coding	0.015000	0.532338	-34(TTCTATAAATGG,-,0.00)
mm_74831.1	chr8	23191491	23191691	-	1	NA	NA	NA	16862	NM_018743	102247	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	0.020000	0.562189	
mm_30724.1	chr4	13743424	13743624	+	1	NA	NA	NA	222	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.155000	0.761194	
mm_108658.1	chr12	86421545	86421745	+	1	NA	NA	NA	1	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.070000	0.606965	
mm_113118.1	chr13	24501488	24501688	+	1	NA	NA	NA	-80601	NM_001286100	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.055000	0.537313	-89(AGCTTTAAAAAA,-,0.00)
mm_94421.1	chr11	5871677	5871877	+	1	NA	NA	NA	6479	NM_008894	18972	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	0.000000	0.497512	
mm_56850.1	chr6	117937315	117937515	-	1	NA	NA	NA	-80	NM_001173372	108017	Mm.250392	NM_033648	ENSMUSG00000004988	Fxyd4	0610008I02Rik|AI267073|Chif	FXYD domain-containing ion transport regulator 4	protein-coding	0.010000	0.601990	-52(GGCCTTAAGAGC,-,0.00),-18(GAGCATAAGAGG,-,0.00),45(GGGTTTAAAGAG,-,0.00)
mm_124676.1	chr15	6424562	6424762	+	1	NA	NA	NA	-20671	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.005000	0.328358	
mm_143324.1	chr17	66357622	66357822	-	1	NA	NA	NA	92028	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.005000	0.487562	
mm_74719.1	chr8	17380862	17381062	-	1	NA	NA	NA	154423	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.005000	0.308458	49(ATCTTTAAAAGA,-,0.00),50(TCTTTAAAAGAT,+,0.00)
mm_44877.1	chr5	34634917	34635117	-	1	NA	NA	NA	2097	NM_026660	68294	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	0.035000	0.557214	
mm_2329.1	chr1	92831255	92831455	+	1	NA	NA	NA	-331	NM_016696	14733	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.070000	0.751244	
mm_59377.1	chr7	25755373	25755573	+	1	NA	NA	NA	-753	NM_144922	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.025000	0.437811	29(GCCTTTATGAGA,-,0.00)
mm_22069.1	chr2	168741663	168741863	-	1	NA	NA	NA	37	NM_015731	11981	Mm.330819	NM_015731	ENSMUSG00000027546	Atp9a	IIa	ATPase, class II, type 9A	protein-coding	0.165000	0.815920	
mm_172464.1	chr7	42642520	42642720	-	1	NA	NA	NA	-16	NM_001242388	208111	Mm.387841	NM_001034857	ENSMUSG00000074158	Zfp976	9830147E19Rik|C330019L16Rik	zinc finger protein 976	protein-coding	0.025000	0.537313	
mm_28248.1	chr3	88503506	88503706	-	1	NA	NA	NA	-254	NM_001002011	16905	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.000000	0.572139	
mm_18970.1	chr2	76812045	76812245	-	1	NA	NA	NA	136830	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.020000	0.398010	
mm_68059.1	chr7	101837907	101838107	-	1	NA	NA	NA	-183	NM_001122739	16332	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0.080000	0.542289	
mm_106172.1	chr11	116679891	116680091	-	1	NA	NA	NA	5394	NR_028570	100216538		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0.040000	0.552239	
mm_131556.1	chr16	18052773	18052973	+	1	NA	NA	NA	13	NM_010047	13353	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0.040000	0.587065	
mm_81897.1	chr9	119895040	119895240	+	1	NA	NA	NA	245	NM_026236	67561	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	0.175000	0.830846	
mm_79388.1	chr9	54801667	54801867	+	1	NA	NA	NA	37019	NM_013496	12903	Mm.34797	NM_013496	ENSMUSG00000032291	Crabp1	AI326249|CRABP-I|Crabp-1|CrabpI|Rbp-5	cellular retinoic acid binding protein I	protein-coding	0.025000	0.592040	
mm_83301.1	chr9	43520917	43521117	-	1	NA	NA	NA	210254	NM_023655	72169	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	0.005000	0.507463	-22(TCTTTTAAACAG,+,0.00)
mm_94047.1	chr10	128179902	128180102	-	1	NA	NA	NA	295	NM_001039080	56516	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.000000	0.482587	
mm_156714.1	chrX	159638763	159638963	+	1	NA	NA	NA	11591	NM_001135727	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.010000	0.577114	21(CCTCATATACTC,+,0.00)
mm_9998.1	chr1	191403172	191403372	-	1	NA	NA	NA	-6231	NM_144880	226849	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0.020000	0.452736	
mm_169956.1	chr16	89635887	89636087	+	1	NA	NA	NA	-64804	NM_001113406	16693	Mm.310906	NM_001113406	ENSMUSG00000091212	Krtap11-1	AA162070|AA589467|AV018433|Hacl1|KAP11.1|PRED29	keratin associated protein 11-1	protein-coding	0.040000	0.537313	
mm_121974.1	chr14	25768697	25768897	-	1	NA	NA	NA	59	NM_001101433	71918	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.110000	0.711443	
mm_11294.1	chr2	30133783	30133983	+	1	NA	NA	NA	137	NM_146252	70296	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0.075000	0.676617	
mm_91738.1	chr10	46819826	46820026	-	1	NA	NA	NA	575177	NR_028276	108637		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0.020000	0.457711	-97(CCCTTTAAAAAT,-,0.00),-96(CCTTTAAAAATC,+,0.00)
mm_106598.1	chr11	120730798	120730998	-	1	NA	NA	NA	1123	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.025000	0.592040	
mm_52829.1	chr6	121359587	121359787	+	1	NA	NA	NA	12990	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.000000	0.407960	
mm_165228.1	chr2	53606289	53606489	+	1	NA	NA	NA	414305	NM_022989	65103	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	0.000000	0.402985	
mm_164251.1	chr15	97995502	97995702	-	1	NA	NA	NA	9122	NM_031163	12824	Mm.2423	NM_031163	ENSMUSG00000022483	Col2a1	Col2|Col2a|Col2a-1|Del1|Dmm|Lpk|Rgsc856	collagen, type II, alpha 1	protein-coding	0.015000	0.577114	
mm_74110.1	chr8	122962830	122963030	+	1	NA	NA	NA	79354	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.005000	0.537313	
mm_22018.1	chr2	167877504	167877704	-	1	NA	NA	NA	-54723	NM_011201	19246	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.020000	0.606965	
mm_4607.1	chr1	178525627	178525827	+	1	NA	NA	NA	-3398	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.000000	0.398010	
mm_42629.1	chr5	118404787	118404987	+	1	NA	NA	NA	-155832	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.005000	0.522388	-33(TTCTATATAAGA,-,0.00)
mm_112065.1	chr12	111980959	111981159	-	1	NA	NA	NA	-308	NM_001127685	217874	Mm.134213	NM_001127685	ENSMUSG00000091402	Rd3l	A930011N13	retinal degeneration 3-like	protein-coding	0.020000	0.502488	
mm_73513.1	chr8	107368713	107368913	+	1	NA	NA	NA	34392	NM_008706	18104	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	0.005000	0.522388	
mm_170642.1	chr19	8989248	8989448	+	1	NA	NA	NA	64	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.110000	0.736318	
mm_22341.1	chr2	180824502	180824702	-	1	NA	NA	NA	-47702	NM_080641	140489	Mm.134062	NM_080641	ENSMUSG00000045493	Bhlhe23	A930001L02Rik|BETA4|Beta3b|Bhlhb4	basic helix-loop-helix family, member e23	protein-coding	0.010000	0.462687	
mm_18072.1	chr2	42652749	42652949	-	1	NA	NA	NA	749	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding	0.070000	0.601990	
mm_87030.1	chr10	28611851	28612051	+	1	NA	NA	NA	-56409	NM_001305663	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.010000	0.427861	
mm_155583.1	chrX	78737647	78737847	+	1	NA	NA	NA	-16	NM_001164739	70864	Mm.66681	NM_001164739	ENSMUSG00000078315	Fam47c	4921509A18Rik|Fam47a|Fam47a-ps	family with sequence similarity 47, member C	protein-coding	0.010000	0.522388	
mm_106669.1	chr11	121519706	121519906	-	1	NA	NA	NA	-464	NM_178763	319530	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.020000	0.532338	
mm_153985.1	chr19	47919114	47919314	-	1	NA	NA	NA	85	NM_001001738	414801	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER|mKIAA1754	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	0.110000	0.671642	
mm_57662.1	chr6	128487394	128487594	-	1	NA	NA	NA	39226	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.035000	0.452736	
mm_11473.1	chr2	32376207	32376407	+	1	NA	NA	NA	5608	NM_198001	73737	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0.045000	0.557214	-34(CACTTGAAAAGG,-,0.00)
mm_134032.1	chr16	5012665	5012865	-	1	NA	NA	NA	788	NM_133185	66049	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	0.010000	0.477612	
mm_21792.1	chr2	164857157	164857357	-	1	NA	NA	NA	451	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.060000	0.567164	
mm_80448.1	chr9	77976788	77976988	+	1	NA	NA	NA	59523	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.035000	0.487562	
mm_107599.1	chr12	49382697	49382897	+	1	NA	NA	NA	-86	NM_001160112	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.020000	0.547264	-32(TCTTTTTAAAGG,-,0.00),-31(CTTTTTAAAGGC,+,0.00),-30(TTTTTAAAGGCC,+,0.00)
mm_23670.1	chr3	68572332	68572532	+	1	NA	NA	NA	64	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.070000	0.676617	
mm_139725.1	chr17	57476313	57476513	+	1	NA	NA	NA	68901	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.005000	0.383085	
mm_153789.1	chr19	45839914	45840114	-	1	NA	NA	NA	-23951	NM_145703	80906	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	0.000000	0.333333	78(CCCTTTAAGCCA,+,0.00)
mm_89029.1	chr10	82699090	82699290	+	1	NA	NA	NA	183	NM_001081218	67933	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838	host cell factor C2	protein-coding	0.120000	0.711443	
mm_22537.1	chr3	8561003	8561203	+	1	NA	NA	NA	51576	NM_025285	20257	Mm.29580	NM_025285	ENSMUSG00000027500	Stmn2	AI159727|SCG10|Scgn10|Stmb2	stathmin-like 2	protein-coding	0.020000	0.442786	
mm_151291.1	chr19	55316240	55316440	+	1	NA	NA	NA	283	NM_001293686	53611	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.090000	0.671642	
mm_14421.1	chr2	130479606	130479806	+	1	NA	NA	NA	29428	NM_001163688	19262	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	0.000000	0.373134	
mm_172.1	chr1	13388741	13388941	+	1	NA	NA	NA	-14758	NM_008678	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.010000	0.427861	
mm_141342.1	chr17	28558193	28558393	-	1	NA	NA	NA	208	NR_105935	102465585		NR_105935	ENSMUSG00000099152	Mir6969	Gm27305|mmu-mir-6969	microRNA 6969	ncRNA	0.030000	0.547264	
mm_73858.1	chr8	118283559	118283759	+	1	NA	NA	NA	48	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.065000	0.582090	
mm_116605.1	chr13	48662626	48662826	-	1	NA	NA	NA	-310	NM_007526	12022	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	0.040000	0.636816	
mm_161747.1	chr17	34048374	34048574	+	1	NA	NA	NA	9336	NM_001317722	12815	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.005000	0.567164	
mm_142764.1	chr17	49509766	49509966	-	1	NA	NA	NA	54471	NM_001008231	76441	Mm.211275	NM_001008231	ENSMUSG00000040260	Daam2	2310016D11Rik|AI843643|AW557870	dishevelled associated activator of morphogenesis 2	protein-coding	0.015000	0.482587	
mm_54680.1	chr6	39419689	39419889	-	1	NA	NA	NA	-13	NM_001311109	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.130000	0.696517	
mm_71479.1	chr8	46617303	46617503	+	1	NA	NA	NA	112	NM_009810	12367	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0.075000	0.651741	
mm_46812.1	chr5	113081482	113081682	-	1	NA	NA	NA	2	NM_001159650	12962	Mm.378899	NM_021352	ENSMUSG00000029352	Crybb3	AI852419	crystallin, beta B3	protein-coding	0.025000	0.577114	-34(GCCCATAAATAG,-,0.00),-32(CCATAAATAGGC,+,0.00)
mm_125785.1	chr15	74716545	74716745	+	1	NA	NA	NA	1806	NM_028216	72373	Mm.46395	NM_028216	ENSMUSG00000022598	Psca	2210408B04Rik	prostate stem cell antigen	protein-coding	0.015000	0.636816	
mm_102974.1	chr11	69671164	69671364	-	1	NA	NA	NA	1159	NM_144958	13681	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0.070000	0.646766	
mm_44455.1	chr5	21865512	21865712	-	1	NA	NA	NA	-8	NM_030727	80979	Mm.160370	NM_030727	ENSMUSG00000029015	Slc26a5	Pres|prestin	solute carrier family 26, member 5	protein-coding	0.095000	0.706468	
mm_12475.1	chr2	71528524	71528724	+	1	NA	NA	NA	-821	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.045000	0.597015	
mm_761.1	chr1	43969762	43969962	+	1	NA	NA	NA	35868	NM_009418	22019	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.010000	0.308458	
mm_119598.1	chr14	51007845	51008045	+	1	NA	NA	NA	16	NM_029145	75019	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	0.010000	0.507463	-19(GTGTTTAAAAGC,-,0.00)
mm_68521.1	chr7	112003726	112003926	-	1	NA	NA	NA	-19680	NM_133758	74996	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	0.000000	0.457711	
mm_157713.1	chrX	66876064	66876264	-	1	NA	NA	NA	-37039	NR_030149	723888		NR_030149	ENSMUSG00000070071	Mir465	Mirn465|mir-465a|mmu-mir-465	microRNA 465	ncRNA	0.030000	0.507463	
mm_44508.1	chr5	24030578	24030778	-	1	NA	NA	NA	12	NM_053090	84652	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.040000	0.646766	
mm_116379.1	chr13	41001042	41001242	-	1	NA	NA	NA	132	NM_026550	68083	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0.085000	0.592040	-74(CCTTTTAGGCGC,+,0.00)
mm_19763.1	chr2	105399212	105399412	-	1	NA	NA	NA	7	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0.125000	0.791045	
mm_77577.1	chr8	123518676	123518876	-	1	NA	NA	NA	-59	NM_018855	104346	Mm.117265	NM_018855	ENSMUSG00000040220	Gas8	Gas11	growth arrest specific 8	protein-coding	0.050000	0.577114	
mm_117908.1	chr13	99430312	99430512	-	1	NA	NA	NA	-17586	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.030000	0.492537	
mm_15013.1	chr2	152604279	152604479	+	1	NA	NA	NA	52	NM_001037247	266620	Mm.330669	NM_001037247	ENSMUSG00000044863	Defb36	BD-36|Defb123|mBD-36	defensin beta 36	protein-coding	0.060000	0.577114	
mm_73202.1	chr8	95678123	95678323	+	1	NA	NA	NA	-24814	NM_001195006	234593	Mm.29846	NM_145602	ENSMUSG00000036564	Ndrg4	D8Bwg1337e|Ndr1-rs|Ndr4|R74996|SMAP-8	N-myc downstream regulated gene 4	protein-coding	0.115000	0.741294	-18(TTTTTTAAACCC,+,0.00)
mm_57793.1	chr6	129274994	129275194	-	1	NA	NA	NA	275	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.005000	0.373134	
mm_92218.1	chr10	68270297	68270497	-	1	NA	NA	NA	8329	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.005000	0.383085	
mm_44464.1	chr5	22931971	22932171	-	1	NA	NA	NA	-185187	NR_027362	330052	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	0.020000	0.447761	
mm_32719.1	chr4	116221583	116221783	+	1	NA	NA	NA	-231	NM_181585	18710	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55pik	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	protein-coding	0.070000	0.621891	
mm_105315.1	chr11	102887612	102887812	-	1	NA	NA	NA	2543	NM_025766	66784	Mm.483216	NM_025766	ENSMUSG00000075510	Fam187a	4933439F11Rik	family with sequence similarity 187, member A	protein-coding	0.010000	0.482587	
mm_126620.1	chr15	83149545	83149745	+	1	NA	NA	NA	0	NR_004432	104307	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.045000	0.427861	
mm_25766.1	chr3	125587711	125587911	+	1	NA	NA	NA	183720	NM_022565	64580	Mm.444289	NM_022565	ENSMUSG00000027971	Ndst4	4930439H17Rik	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	protein-coding	0.000000	0.323383	
mm_4565.1	chr1	177447369	177447569	+	1	NA	NA	NA	1648	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.025000	0.492537	
mm_10170.1	chr2	4559604	4559804	+	1	NA	NA	NA	-50	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.060000	0.577114	
mm_27877.1	chr3	79170392	79170592	-	1	NA	NA	NA	-24617	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.442786	
mm_98467.1	chr11	94949302	94949502	+	1	NA	NA	NA	13178	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.015000	0.567164	-54(TCTTTTAGGGAC,+,0.00),7(AGGCATAAAGGG,-,0.00)
mm_129791.1	chr15	82847767	82847967	-	1	NA	NA	NA	50594	NR_027799	21378	Mm.417272	NR_027799		Tbrg3	TB-11	transforming growth factor beta regulated gene 3	ncRNA	0.000000	0.343284	
mm_31667.1	chr4	60003382	60003582	+	1	NA	NA	NA	-67	NM_001081285	620807	Mm.464562	NM_001081285	ENSMUSG00000078689	Mup6	Gm12544|Mup2|OTTMUSG00000007423	major urinary protein 6	protein-coding	0.015000	0.482587	-33(GAGTATATAAAG,-,0.00)
mm_101275.1	chr11	21371082	21371282	-	1	NA	NA	NA	85	NM_001290634	216558	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0.080000	0.706468	
mm_28745.1	chr3	95754700	95754900	-	1	NA	NA	NA	177	NM_027931	71807	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	0.060000	0.621891	
mm_82644.1	chr9	22016313	22016513	-	1	NA	NA	NA	13425	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.025000	0.587065	
mm_87972.1	chr10	63457481	63457681	+	1	NA	NA	NA	70	NM_001164376	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.005000	0.482587	
mm_24336.1	chr3	89662623	89662823	+	1	NA	NA	NA	-52299	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.020000	0.527363	
mm_73056.1	chr8	94377788	94377988	+	1	NA	NA	NA	-8612	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.025000	0.577114	
mm_149683.1	chr19	20492621	20492821	+	1	NA	NA	NA	6	NR_015502	320092	Mm.482524	NR_015502		E030003E18Rik	1700127G21Rik	RIKEN cDNA E030003E18 gene	ncRNA	0.005000	0.522388	
mm_172153.1	chr6	41475494	41475694	+	1	NA	NA	NA	16664	NM_053243	114228	Mm.449428	NM_053243	ENSMUSG00000062751	Prss1	Try-1|Try1|Trygn16	protease, serine 1 (trypsin 1)	protein-coding	0.065000	0.542289	
mm_86439.1	chr10	3973072	3973272	+	1	NA	NA	NA	97	NM_172308	270685	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.050000	0.636816	
mm_108791.1	chr12	91400345	91400545	+	1	NA	NA	NA	-548	NM_001113404	22095	Mm.173847	NM_011648	ENSMUSG00000020963	Tshr	AI481368|hypothroid|hyt|pet	thyroid stimulating hormone receptor	protein-coding	0.045000	0.592040	
mm_2408.1	chr1	93811728	93811928	+	1	NA	NA	NA	7863	NM_025454	66262	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	0.025000	0.517413	
mm_80337.1	chr9	75071088	75071288	+	1	NA	NA	NA	-18	NM_010864	17918	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	0.125000	0.716418	
mm_146613.1	chr18	10052057	10052257	-	1	NA	NA	NA	-22008	NM_001038589	59025	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0.090000	0.641791	
mm_132748.1	chr16	44159608	44159808	+	1	NA	NA	NA	-13689	NM_001029889	207806	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.005000	0.363184	
mm_88485.1	chr10	77685994	77686194	+	1	NA	NA	NA	-475	NM_001287074	252974	Mm.221237	NM_145855	ENSMUSG00000069581	Tspear	C330046G03Rik|ORF65|TSP-EAR|Tnep1	thrombospondin type laminin G domain and EAR repeats	protein-coding	0.020000	0.587065	
mm_154294.1	chr19	61198658	61198858	-	1	NA	NA	NA	-22449	NM_001177513	633057	Mm.426097	NM_001177513	ENSMUSG00000094649	Gm7102	EG633057	predicted gene 7102	protein-coding	0.070000	0.641791	
mm_134563.1	chr16	20316704	20316904	-	1	NA	NA	NA	8600	NM_183158	224044	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.015000	0.537313	-33(GAGCATAAAAGG,-,0.00)
mm_109188.1	chr12	108495182	108495382	+	1	NA	NA	NA	-59438	NM_001163394	14026	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.025000	0.487562	
mm_94806.1	chr11	23008427	23008627	+	1	NA	NA	NA	-4860	NM_028672	73873	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0.075000	0.636816	
mm_120976.1	chr14	78650834	78651034	+	1	NA	NA	NA	-6483	NR_104044	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.015000	0.552239	
mm_157090.1	chrX	9437001	9437201	-	1	NA	NA	NA	32223	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.313433	-10(GCTTAAATACCT,+,0.00)
mm_53702.1	chr6	142882731	142882931	+	1	NA	NA	NA	68600	NR_045707	665037	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037|ENSMUSG00000072683	predicted gene 7457	ncRNA	0.015000	0.442786	
mm_165111.1	chr19	58143928	58144128	+	1	NA	NA	NA	92861	NR_049196	100885835		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0.015000	0.487562	
mm_74032.1	chr8	121806292	121806492	+	1	NA	NA	NA	23177	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.045000	0.557214	
mm_95886.1	chr11	58104010	58104210	+	1	NA	NA	NA	-43	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.100000	0.701493	
mm_118237.1	chr13	111748125	111748325	-	1	NA	NA	NA	60758	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.020000	0.402985	
mm_43967.1	chr5	145371617	145371817	+	1	NA	NA	NA	26447	NM_001100180	622127	Mm.359379	NM_001100180	ENSMUSG00000070419	Cyp3a57	EG622127	cytochrome P450, family 3, subfamily a, polypeptide 57	protein-coding	0.000000	0.348259	
mm_79783.1	chr9	62868610	62868810	+	1	NA	NA	NA	-6686	NR_003965	677044	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	ENSMUSG00000074250	ribsomal protein S2 pseudogene	pseudo	0.020000	0.597015	
mm_56835.1	chr6	117174910	117175110	-	1	NA	NA	NA	6475	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.015000	0.368159	
mm_129573.1	chr15	79729029	79729229	-	1	NA	NA	NA	13407	NM_194342	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.025000	0.502488	
mm_11896.1	chr2	49846237	49846437	+	1	NA	NA	NA	58651	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.015000	0.427861	17(GACTCTTTATGG,-,0.00),19(CTCTTTATGGCC,+,0.00)
mm_3701.1	chr1	153762530	153762730	+	1	NA	NA	NA	13204	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.000000	0.432836	-19(ACCCATATAAAG,-,0.00),-17(CCATATAAAGGT,+,0.00)
mm_4791.1	chr1	184536669	184536869	+	1	NA	NA	NA	20922	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.010000	0.358209	-69(CCCTCTAAAAAA,-,0.00),-33(CCTTAAATAGAA,+,0.00)
mm_163908.1	chr14	31210654	31210854	+	1	NA	NA	NA	2442	NM_009393	21924	Mm.439921	NM_009393	ENSMUSG00000091898	Tnnc1	AI874626|TnC|cTnC|cTnI|tncc	troponin C, cardiac/slow skeletal	protein-coding	0.020000	0.547264	
mm_133874.1	chr16	96383804	96384004	+	1	NA	NA	NA	22140	NM_028078	72058	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.005000	0.393035	
mm_89701.1	chr10	97646892	97647092	+	1	NA	NA	NA	2924	NM_007884	13516	Mm.148886	NM_007884	ENSMUSG00000019936	Epyc	Dspg3|PG-Lb|SLRR3B	epiphycan	protein-coding	0.000000	0.313433	
mm_126973.1	chr15	93412704	93412904	+	1	NA	NA	NA	14340	NM_001285863	223828	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.010000	0.497512	
mm_139668.1	chr17	57411875	57412075	+	1	NA	NA	NA	53289	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.373134	-45(AGCTTTAAAAAA,-,0.00)
mm_142721.1	chr17	48146128	48146328	-	1	NA	NA	NA	79	NM_001177897	328829	Mm.466999	NM_177824	ENSMUSG00000073386	9830107B12Rik	Trem5	RIKEN cDNA 9830107B12 gene	protein-coding	0.010000	0.537313	
mm_32239.1	chr4	102306271	102306471	+	1	NA	NA	NA	51432	NM_019840	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.005000	0.293532	
mm_86266.1	chr9	121705256	121705456	-	1	NA	NA	NA	-327	NM_178677	215474	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.045000	0.631841	
mm_44320.1	chr5	9725139	9725339	-	1	NA	NA	NA	113	NM_181850	108069	Mm.318966	NM_181850	ENSMUSG00000003974	Grm3	0710001G23Rik|Gprc1c|mGlu3|mGluR3	glutamate receptor, metabotropic 3	protein-coding	0.035000	0.552239	
mm_43626.1	chr5	138172021	138172221	+	1	NA	NA	NA	100	NM_021392	11781	Mm.113205	NM_021392	ENSMUSG00000019518	Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding	0.075000	0.552239	
mm_138513.1	chr17	35237583	35237783	+	1	NA	NA	NA	1087	NM_023179	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.030000	0.606965	
mm_57690.1	chr6	128519408	128519608	-	1	NA	NA	NA	7212	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.025000	0.437811	
mm_98136.1	chr11	87566595	87566795	+	1	NA	NA	NA	-11694	NM_001284398	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding	0.010000	0.427861	-53(CCTTTTATGACA,+,0.00)
mm_33794.1	chr4	134924267	134924467	+	1	NA	NA	NA	742	NM_023665	27981	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.120000	0.661692	
mm_827.1	chr1	51083417	51083617	+	1	NA	NA	NA	155994	NM_019790	56363	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	0.000000	0.402985	
mm_7443.1	chr1	120119969	120120169	-	1	NA	NA	NA	850	NM_001037999	13167	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	0.015000	0.542289	
mm_139351.1	chr17	50509212	50509412	+	1	NA	NA	NA	-235	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.155000	0.736318	
mm_16137.1	chr2	170526654	170526854	+	1	NA	NA	NA	-14827	NR_040367	100502946	Mm.421284	NR_040367	ENSMUSG00000085495	Gm16796	-	predicted gene, 16796	ncRNA	0.025000	0.502488	53(GCCTTTTTAAAA,-,0.00)
mm_94496.1	chr11	7063645	7063845	+	1	NA	NA	NA	256	NM_009622	432530	Mm.259733	NM_009622	ENSMUSG00000020431	Adcy1	AC1|D11Bwg1392e|I-AC|brl|mKIAA4070	adenylate cyclase 1	protein-coding	0.135000	0.766169	
mm_115832.1	chr13	21286872	21287072	-	1	NA	NA	NA	5714	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.010000	0.442786	
mm_33398.1	chr4	129820654	129820854	+	1	NA	NA	NA	46	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.105000	0.706468	
mm_93498.1	chr10	112928310	112928510	-	1	NA	NA	NA	616	NM_001033474	382423	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132|ENSMUSG00000074747	ataxin 7-like 3B	protein-coding	0.040000	0.527363	
mm_133665.1	chr16	92057981	92058181	+	1	NA	NA	NA	-241	NM_017391	53881	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0.110000	0.731343	
mm_51154.1	chr6	70719109	70719309	+	1	NA	NA	NA	72966	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.020000	0.502488	
mm_45536.1	chr5	72763661	72763861	-	1	NA	NA	NA	-10984	NM_001122754	22165	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.025000	0.532338	
mm_31626.1	chr4	59221526	59221726	+	1	NA	NA	NA	32076	NM_011673	22234	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.015000	0.358209	
mm_59278.1	chr7	24904338	24904538	+	1	NA	NA	NA	92	NM_001130152	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.075000	0.661692	
mm_18345.1	chr2	58156977	58157177	-	1	NA	NA	NA	3045	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.005000	0.422886	
mm_30887.1	chr4	32250482	32250682	+	1	NA	NA	NA	-166853	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.030000	0.487562	
mm_171129.1	chr3	146499842	146500042	+	1	NA	NA	NA	106	NM_010318	14707	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	0.140000	0.726368	
mm_42848.1	chr5	122206711	122206911	+	1	NA	NA	NA	-2918	NM_001042489	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.015000	0.507463	36(CCTTTTATGTCC,+,0.00)
mm_61961.1	chr7	90302278	90302478	+	1	NA	NA	NA	23	NR_110348	83671	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	0.115000	0.781095	
mm_51184.1	chr6	70844489	70844689	+	1	NA	NA	NA	74	NM_001313918	13666	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.140000	0.711443	
mm_91437.1	chr10	33809472	33809672	-	1	NA	NA	NA	-27457	NM_001101452	215895	Mm.473684	NM_001101452	ENSMUSG00000090298	Sult3a2	EG215895|Gm4794	sulfotransferase family 3A, member 2	protein-coding	0.025000	0.383085	
mm_18802.1	chr2	73892502	73892702	-	1	NA	NA	NA	37	NM_001284371	11909	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0.090000	0.661692	20(GGCCTTTAAAGT,-,0.00),21(GCCTTTAAAGTG,+,0.00),22(CCTTTAAAGTGC,+,0.00)
mm_67540.1	chr7	81455360	81455560	-	1	NA	NA	NA	-702	NM_001252526	12877	Mm.273122	NM_007755	ENSMUSG00000025586	Cpeb1	AU024112|Cpeb|mCPEB	cytoplasmic polyadenylation element binding protein 1	protein-coding	0.060000	0.611940	
mm_20900.1	chr2	149092322	149092522	-	1	NA	NA	NA	-216910	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.010000	0.447761	
mm_154336.1	chrM	3910	4110	+	1	NA	NA	NA	NA	NA									0.010000	0.393035	
mm_79706.1	chr9	61139097	61139297	+	1	NA	NA	NA	682	NR_045705	619328	Mm.325722	NR_045705	ENSMUSG00000110998	I730028E13Rik	-	RIKEN cDNA I730028E13 gene	ncRNA	0.005000	0.547264	
mm_56103.1	chr6	87467864	87468064	-	1	NA	NA	NA	28363	NR_104483	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.010000	0.527363	
mm_170859.1	chr2	180725210	180725410	+	1	NA	NA	NA	-29	NM_183161	228993	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	0.050000	0.636816	
mm_131676.1	chr16	20673213	20673413	+	1	NA	NA	NA	586	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.135000	0.786070	
mm_136074.1	chr16	84831693	84831893	-	1	NA	NA	NA	3205	NM_001302216	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.015000	0.497512	
mm_46953.1	chr5	114952657	114952857	-	1	NA	NA	NA	10555	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.025000	0.641791	
mm_149076.1	chr19	8883787	8883987	+	1	NA	NA	NA	9	NM_001286103	102308570	Mm.27503	NM_001286103	ENSMUSG00000096740	Lbhd1	Gm21743	LBH domain containing 1	protein-coding	0.005000	0.492537	
mm_76842.1	chr8	105289029	105289229	-	1	NA	NA	NA	399	NM_001166394	74356	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0.025000	0.547264	
mm_129252.1	chr15	76669778	76669978	-	1	NA	NA	NA	70	NM_007989	14106	Mm.42011	NM_007989	ENSMUSG00000033837	Foxh1	Fast1|Fast2|fast-1|fast-2	forkhead box H1	protein-coding	0.025000	0.616915	
mm_43204.1	chr5	129096690	129096890	+	1	NA	NA	NA	40	NM_001347486	243277	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding	0.025000	0.606965	
mm_49176.1	chr6	14901510	14901710	+	1	NA	NA	NA	261	NM_053242	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.125000	0.736318	-30(GCATTTATGCCG,+,0.00)
mm_168686.1	chr11	96065297	96065497	-	1	NA	NA	NA	-33	NM_172300	268470	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	0.105000	0.756219	
mm_65044.1	chr7	18567421	18567621	-	1	NA	NA	NA	-216	NM_001037168	545925	Mm.440302	NM_001037168	ENSMUSG00000070797	Psg27	EG545925|cea15	pregnancy-specific glycoprotein 27	protein-coding	0.005000	0.527363	
mm_58806.1	chr7	16310328	16310528	+	1	NA	NA	NA	845	NM_133234	170770	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.125000	0.711443	
mm_116996.1	chr13	56548441	56548641	-	1	NA	NA	NA	-3	NM_010702	16841	Mm.16973	NM_010702	ENSMUSG00000021539	Lect2	-	leukocyte cell-derived chemotaxin 2	protein-coding	0.030000	0.447761	
mm_28453.1	chr3	90659330	90659530	-	1	NA	NA	NA	5128	NM_199422	381493	Mm.291525	NM_199422	ENSMUSG00000063767	S100a7a	AY465109|Gm1020|S100A7L1|S100A7f|S100a15|S100a15a|S100a17l1	S100 calcium binding protein A7A	protein-coding	0.000000	0.457711	-48(CCCTTTATGGAA,+,0.00)
mm_46492.1	chr5	105132268	105132468	-	1	NA	NA	NA	7184	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.358209	
mm_88395.1	chr10	76562199	76562399	+	1	NA	NA	NA	27	NM_029661	76573	Mm.45611	NM_029661	ENSMUSG00000009115	Spatc1l	1700022B01Rik|1700027D21Rik|AA062323	spermatogenesis and centriole associated 1 like	protein-coding	0.040000	0.577114	-78(GCCTCTTTAAGG,-,0.00)
mm_56170.1	chr6	88000239	88000439	-	1	NA	NA	NA	18656	NR_026990	434064	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	0.025000	0.492537	
mm_60164.1	chr7	40893579	40893779	+	1	NA	NA	NA	4645	NR_040329	320210	Mm.126237	NR_040329	ENSMUSG00000100600	A230077H06Rik	-	RIKEN cDNA A230077H06 gene	ncRNA	0.005000	0.497512	
mm_121246.1	chr14	103057169	103057369	+	1	NA	NA	NA	10257	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.035000	0.472637	
mm_12065.1	chr2	59504757	59504957	+	1	NA	NA	NA	20204	NM_029723	76747	Mm.275769	NM_029723	ENSMUSG00000026989	Dapl1	2310032F03Rik|EEDA	death associated protein-like 1	protein-coding	0.010000	0.442786	
mm_74369.1	chr8	128479600	128479800	+	1	NA	NA	NA	120459	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.005000	0.383085	
mm_45271.1	chr5	64680235	64680435	-	1	NA	NA	NA	-69636	NR_045078	100042198	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0.020000	0.542289	
mm_146763.1	chr18	16809179	16809379	-	1	NA	NA	NA	-33	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.190000	0.825871	
mm_55544.1	chr6	70918825	70919025	-	1	NA	NA	NA	-3	NM_028825	74221	Mm.273326	NM_028825	ENSMUSG00000051896	Tex37	1700011F03Rik	testis expressed 37	protein-coding	0.005000	0.487562	
mm_95855.1	chr11	57973092	57973292	+	1	NA	NA	NA	-35872	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.015000	0.601990	-35(CTCTCTTAAAGG,-,0.00),-34(TCTCTTAAAGGC,+,0.00)
mm_117237.1	chr13	64306966	64307166	-	1	NA	NA	NA	5644	NM_025370	66129	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	0.010000	0.427861	
mm_169588.1	chr15	25840543	25840743	-	1	NA	NA	NA	-2655	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.040000	0.492537	
mm_30234.1	chr3	146107921	146108121	-	1	NA	NA	NA	15	NM_172864	242253	Mm.235040	NM_172864	ENSMUSG00000043020	Wdr63	4931433A13Rik	WD repeat domain 63	protein-coding	0.035000	0.472637	
mm_146215.1	chr18	76954801	76955001	+	1	NA	NA	NA	10483	NM_001039201	76987	Mm.236127	NM_029826	ENSMUSG00000025421	Hdhd2	0610039H12Rik|3110052N05Rik	haloacid dehalogenase-like hydrolase domain containing 2	protein-coding	0.015000	0.487562	
mm_69082.1	chr7	127014495	127014695	-	1	NA	NA	NA	-1	NM_080638	78388	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0.015000	0.567164	-40(CCCTTTAAATAC,+,0.00),-40(CCCTTTAAATAC,-,0.00),-38(CTTTAAATACAC,+,0.00)
mm_109658.1	chr12	113014408	113014608	+	1	NA	NA	NA	0	NM_001291445	217893	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.205000	0.885572	
mm_151033.1	chr19	47015207	47015407	+	1	NA	NA	NA	-118	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.155000	0.761194	
mm_54718.1	chr6	40401673	40401873	-	1	NA	NA	NA	34360	NM_175528	243780	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0.000000	0.278607	
mm_192.1	chr1	15804262	15804462	+	1	NA	NA	NA	-1284	NM_009352	21749	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	0.010000	0.502488	
mm_96760.1	chr11	69914086	69914286	+	1	NA	NA	NA	-6	NM_019726	56310	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953	G protein pathway suppressor 2	protein-coding	0.130000	0.736318	
mm_162744.1	chr10	56389254	56389454	+	1	NA	NA	NA	12054	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.015000	0.378109	
mm_112740.1	chr13	19339723	19339923	+	1	NA	NA	NA	55990	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.462687	
mm_121781.1	chr14	19890727	19890927	-	1	NA	NA	NA	51902	NR_105025	52512	Mm.483998	NR_105025		D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.000000	0.388060	
mm_168389.1	chr11	26650863	26651063	+	1	NA	NA	NA	-57043	NM_001252447	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.010000	0.497512	-30(CCCTTTATAAGC,+,0.00),-30(CCCTTTATAAGC,-,0.00),-28(CTTTATAAGCAC,+,0.00)
mm_149874.1	chr19	25174985	25175185	+	1	NA	NA	NA	-62117	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.005000	0.487562	
mm_70720.1	chr8	15726435	15726635	+	1	NA	NA	NA	442303	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0.015000	0.467662	-33(CCCCATAAAGAC,-,0.00)
mm_101732.1	chr11	43157714	43157914	-	1	NA	NA	NA	7937	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding	0.005000	0.378109	-28(CTGCCTATAAGG,-,0.00)
mm_149801.1	chr19	23687340	23687540	+	1	NA	NA	NA	40	NM_028208	72351	Mm.474795	NM_028208	ENSMUSG00000074925	Ptar1	1700084D09Rik|2010013L17Rik|4930428J16Rik|AI449677	protein prenyltransferase alpha subunit repeat containing 1	protein-coding	0.160000	0.741294	
mm_126558.1	chr15	82147544	82147744	+	1	NA	NA	NA	375	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.155000	0.781095	
mm_66356.1	chr7	43527755	43527955	-	1	NA	NA	NA	5316	NM_001111058	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.000000	0.393035	
mm_10339.1	chr2	11645650	11645850	+	1	NA	NA	NA	2958	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.020000	0.437811	
mm_32974.1	chr4	120097096	120097296	+	1	NA	NA	NA	-64010	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.050000	0.606965	
mm_138381.1	chr17	35027442	35027642	+	1	NA	NA	NA	474	NR_028258	78376	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	0.025000	0.631841	
mm_53932.1	chr6	4746951	4747151	-	1	NA	NA	NA	153	NM_001130188	20392	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	0.045000	0.577114	
mm_27448.1	chr3	52008981	52009181	-	1	NA	NA	NA	95925	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.005000	0.472637	
mm_115232.1	chr13	109903000	109903200	+	1	NA	NA	NA	-709	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.165000	0.746269	
mm_71329.1	chr8	45007140	45007340	+	1	NA	NA	NA	57032	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.035000	0.477612	
mm_2470.1	chr1	105669711	105669911	+	1	NA	NA	NA	5950	NM_173187	227446	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	0.000000	0.417910	
mm_139433.1	chr17	53570139	53570339	+	1	NA	NA	NA	3268	NM_020005	18519	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.005000	0.393035	
mm_38301.1	chr4	136896249	136896449	-	1	NA	NA	NA	2495	NM_007572	12259	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	0.040000	0.557214	
mm_112367.1	chr12	119160817	119161017	-	1	NA	NA	NA	77359	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.000000	0.318408	
mm_141945.1	chr17	35061394	35061594	-	1	NA	NA	NA	2459	NM_016765	51793	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	0.020000	0.562189	
mm_20294.1	chr2	126933121	126933321	-	1	NA	NA	NA	14	NM_023220	66552	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	0.070000	0.587065	
mm_85026.1	chr9	88454178	88454378	-	1	NA	NA	NA	-15327	NM_172926	244962	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0.010000	0.373134	
mm_170412.1	chr18	67933937	67934137	+	1	NA	NA	NA	780	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.060000	0.611940	
mm_62892.1	chr7	116031826	116032026	+	1	NA	NA	NA	-879	NM_001025560	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.100000	0.721393	
mm_81342.1	chr9	108548328	108548528	+	1	NA	NA	NA	-12073	NM_011830	23918	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine 5'-phosphate dehydrogenase 2	protein-coding	0.015000	0.412935	8(ATTTTTAAAAGG,-,0.00)
mm_125961.1	chr15	76266856	76267056	+	1	NA	NA	NA	-1133	NM_028852	74281	Mm.159156	NM_028852	ENSMUSG00000049653	Spatc1	1700084J23Rik|speriolin	spermatogenesis and centriole associated 1	protein-coding	0.000000	0.522388	
mm_141615.1	chr17	32812374	32812574	-	1	NA	NA	NA	-2543	NM_183177	240063	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	0.005000	0.308458	
mm_10443.1	chr2	14263215	14263415	+	1	NA	NA	NA	2312	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.005000	0.447761	20(GTTTTTAAATGC,+,0.00)
mm_59600.1	chr7	28139867	28140067	+	1	NA	NA	NA	10501	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.035000	0.577114	
mm_5868.1	chr1	53776605	53776805	-	1	NA	NA	NA	8510	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.015000	0.402985	
mm_47083.1	chr5	117115834	117116034	-	1	NA	NA	NA	59	NM_001122666	71954	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	0.160000	0.800995	
mm_61563.1	chr7	79660096	79660296	+	1	NA	NA	NA	0	NM_029835	77011	Mm.28132	NM_029835	ENSMUSG00000046591	Ticrr	5730590G19Rik|BC028450|Lrrk1	TOPBP1-interacting checkpoint and replication regulator	protein-coding	0.050000	0.562189	
mm_97409.1	chr11	77953373	77953573	+	1	NA	NA	NA	22634	NM_021286	20370	Mm.229330	NM_021286	ENSMUSG00000000632	Sez6	BSRP-C|D11Bhm177e|sez-6	seizure related gene 6	protein-coding	0.040000	0.592040	
mm_156155.1	chrX	129954973	129955173	+	1	NA	NA	NA	205331	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.000000	0.308458	
mm_33298.1	chr4	128993169	128993369	+	1	NA	NA	NA	45	NM_001033966	11637	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.080000	0.582090	
mm_47350.1	chr5	122614415	122614615	-	1	NA	NA	NA	3	NM_009879	12589	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	0.090000	0.676617	
mm_92971.1	chr10	86294959	86295159	-	1	NA	NA	NA	-5353	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.015000	0.572139	
mm_69846.1	chr7	141408442	141408642	-	1	NA	NA	NA	5583	NM_172116	213350	Mm.290953	NM_172116	ENSMUSG00000051007	Pddc1	BC023835|D230016J19Rik	Parkinson disease 7 domain containing 1	protein-coding	0.010000	0.383085	54(GTCTTTATGAGG,-,0.00)
mm_42641.1	chr5	118561045	118561245	+	1	NA	NA	NA	426	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.060000	0.552239	
mm_35616.1	chr4	43442866	43443066	-	1	NA	NA	NA	689	NM_011571	21754	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.105000	0.686567	
mm_133461.1	chr16	89150985	89151185	+	1	NA	NA	NA	-54776	NM_001163615	622935	Mm.459837	NM_001163615	ENSMUSG00000091039	Krtap20-2	1190004K03Rik|EG622935|Gm6371	keratin associated protein 20-2	protein-coding	0.000000	0.477612	-34(GTGTATAAAAAG,-,0.00)
mm_49151.1	chr6	11935089	11935289	+	1	NA	NA	NA	9308	NM_001168382	75725	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	0.005000	0.313433	55(CACTATTTAAGG,-,0.00)
mm_38124.1	chr4	134563246	134563446	-	1	NA	NA	NA	4505	NR_105829	102465216		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.020000	0.398010	
mm_48629.1	chr5	145136841	145137041	-	1	NA	NA	NA	3148	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.030000	0.537313	
mm_46594.1	chr5	107725929	107726129	-	1	NA	NA	NA	-224	NM_001267621	14581	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.040000	0.497512	
mm_50118.1	chr6	41534957	41535157	+	1	NA	NA	NA	13281	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.522388	
mm_157304.1	chrX	20929716	20929916	-	1	NA	NA	NA	1739	NM_008823	18636	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	0.005000	0.442786	
mm_85927.1	chr9	112073774	112073974	-	1	NA	NA	NA	44837	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.000000	0.407960	28(GGCTATTAAAAC,-,0.00)
mm_81270.1	chr9	108080373	108080573	+	1	NA	NA	NA	37	NM_008243	15235	Mm.8369	NM_008243	ENSMUSG00000032591	Mst1	D3F15S2h|D9H3F15S2|DNF15S2h|Hgfl	macrophage stimulating 1 (hepatocyte growth factor-like)	protein-coding	0.015000	0.587065	
mm_14221.1	chr2	127363081	127363281	+	1	NA	NA	NA	-105	NM_009633	11552	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	0.090000	0.711443	
mm_97029.1	chr11	72208646	72208846	+	1	NA	NA	NA	1192	NM_026559	52700	Mm.27670	NM_026559	ENSMUSG00000020803	Txndc17	4831443O22Rik|D11Ertd672e|TRP14|Txnl5	thioredoxin domain containing 17	protein-coding	0.005000	0.308458	
mm_80219.1	chr9	72537646	72537846	+	1	NA	NA	NA	5506	NM_001033536	319758	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	0.000000	0.288557	
mm_160848.1	chr11	51756729	51756929	-	1	NA	NA	NA	5	NM_001290785	77371	Mm.33878	NM_175255	ENSMUSG00000036391	Sec24a	-	Sec24 related gene family, member A (S. cerevisiae)	protein-coding	0.055000	0.552239	
mm_108988.1	chr12	102757888	102758088	+	1	NA	NA	NA	13	NM_025666	66622	Mm.34261	NM_025666	ENSMUSG00000041712	Ubr7	5730410I19Rik|AA589405|AW557761	ubiquitin protein ligase E3 component n-recognin 7 (putative)	protein-coding	0.100000	0.716418	
mm_133455.1	chr16	88924692	88924892	+	1	NA	NA	NA	7472	NM_133359	170939	Mm.188445	NM_133359	ENSMUSG00000057174	Krtap19-9b	Krtap16-10b|Krtap16.10L	keratin associated protein 19-9B	protein-coding	0.005000	0.437811	
mm_29589.1	chr3	117868837	117869037	-	1	NA	NA	NA	-1	NM_029655	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.150000	0.810945	
mm_49544.1	chr6	30401816	30402016	+	1	NA	NA	NA	61	NM_001311087	76788	Mm.277308	NM_029742	ENSMUSG00000029775	Klhdc10	2410127E18Rik|AI593221|mKIAA0265	kelch domain containing 10	protein-coding	0.085000	0.706468	
mm_62549.1	chr7	102441651	102441851	+	1	NA	NA	NA	56	NM_009103	20133	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.095000	0.577114	
mm_88654.1	chr10	79994984	79995184	+	1	NA	NA	NA	-2524	NM_001347081	27403	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.015000	0.512438	-29(GCTTTAAAATAC,+,0.00)
mm_120576.1	chr14	69190580	69190780	+	1	NA	NA	NA	-12	NM_010921	18095	Mm.3520	NM_010921	ENSMUSG00000022061	Nkx3-1	Bax|NKX3.1|NKX3A|Nkx-3.1|bagpipe	NK-3 transcription factor, locus 1 (Drosophila)	protein-coding	0.125000	0.731343	-30(GGCTATAAGTGC,-,0.00)
mm_89426.1	chr10	90936645	90936845	+	1	NA	NA	NA	106902	NM_001347053	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.000000	0.398010	78(CCATATATGCAC,+,0.00)
mm_137722.1	chr17	29135322	29135522	+	1	NA	NA	NA	366	NM_001002786	442827	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	0.010000	0.522388	
mm_72991.1	chr8	93011507	93011707	+	1	NA	NA	NA	36585	NM_001013764	244595	Mm.390089	NM_001013764	ENSMUSG00000071047	Ces1a	Ces1l|EG244595|Gm4976	carboxylesterase 1A	protein-coding	0.030000	0.517413	
mm_136519.1	chr16	97454148	97454348	-	1	NA	NA	NA	8657	NM_010846	17857	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.005000	0.507463	
mm_144337.1	chr18	14706040	14706240	+	1	NA	NA	NA	-11	NM_001163609	73677	Mm.87277	NM_001163609	ENSMUSG00000036743	Psma8	2410072D24Rik	proteasome (prosome, macropain) subunit, alpha type, 8	protein-coding	0.060000	0.621891	
mm_51577.1	chr6	83758816	83759016	+	1	NA	NA	NA	3592	NR_105027	67934	Mm.126190	NR_105027	ENSMUSG00000099354	1700124L16Rik	-	RIKEN cDNA 1700124L16 gene	ncRNA	0.015000	0.442786	
mm_75076.1	chr8	33862438	33862638	-	1	NA	NA	NA	67325	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.030000	0.467662	
mm_69934.1	chr7	142084574	142084774	-	1	NA	NA	NA	10610	NM_008748	18218	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	0.010000	0.597015	-34(TGCTCTAAATGG,-,0.00)
mm_154606.1	chrX	7644138	7644338	+	1	NA	NA	NA	5658	NM_009305	20977	Mm.223674	NM_009305	ENSMUSG00000031144	Syp	A230093K24Rik|AI848995|Syn|p38	synaptophysin	protein-coding	0.015000	0.532338	
mm_54159.1	chr6	23085083	23085283	-	1	NA	NA	NA	47803	NM_013930	30956	Mm.18651	NM_013930	ENSMUSG00000029695	Aass	LKR|LKR/SDH|LOR|LOR/SDH|Lorsdh|SDH	aminoadipate-semialdehyde synthase	protein-coding	0.010000	0.547264	
mm_71233.1	chr8	40906509	40906709	+	1	NA	NA	NA	-19624	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.005000	0.288557	
mm_164348.1	chr16	17833673	17833873	-	1	NA	NA	NA	654	NR_027959	433004	Mm.310200	NM_001002790		B830017H08Rik	-	RIKEN cDNA B830017H08 gene	ncRNA	0.195000	0.815920	
mm_40205.1	chr5	37044851	37045051	+	1	NA	NA	NA	-5906	NM_178394	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0.005000	0.512438	-30(GCTTTTAGACAA,+,0.00)
mm_50528.1	chr6	49045285	49045485	+	1	NA	NA	NA	8867	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.020000	0.532338	
mm_9793.1	chr1	181837932	181838132	-	1	NA	NA	NA	4369	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.010000	0.502488	
mm_150496.1	chr19	39016822	39017022	+	1	NA	NA	NA	9903	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.005000	0.283582	
mm_152299.1	chr19	9083696	9083896	-	1	NA	NA	NA	4160	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.005000	0.442786	
mm_108411.1	chr12	81859900	81860100	+	1	NA	NA	NA	-30	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	0.175000	0.830846	
mm_81536.1	chr9	110131959	110132159	+	1	NA	NA	NA	35	NM_009211	20588	Mm.85410	NM_009211	ENSMUSG00000032481	Smarcc1	AI115498|BAF155|Rsc8|SRG3|msp3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	protein-coding	0.150000	0.751244	
mm_103166.1	chr11	70458695	70458895	-	1	NA	NA	NA	-827	NM_001029929	574428	Mm.472771	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.015000	0.542289	
mm_72752.1	chr8	85299556	85299756	+	1	NA	NA	NA	24	NR_028268	56452	Mm.29709	NM_019716	ENSMUSG00000031697	Orc6	6720420I10Rik|Orc6l	origin recognition complex, subunit 6	protein-coding	0.090000	0.582090	
mm_32115.1	chr4	99030781	99030981	+	1	NA	NA	NA	-73	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.010000	0.432836	40(GTGTATATAAAG,-,0.00)
mm_87290.1	chr10	42501972	42502172	+	1	NA	NA	NA	18	NM_017472	54198	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.125000	0.721393	
mm_97751.1	chr11	80480860	80481060	+	1	NA	NA	NA	3914	NM_009871	12569	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0.010000	0.278607	
mm_133624.1	chr16	91563339	91563539	+	1	NA	NA	NA	16345	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.015000	0.482587	
mm_168983.1	chr12	92891579	92891779	-	1	NA	NA	NA	553144	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0.020000	0.398010	
mm_115628.1	chr13	12106746	12106946	-	1	NA	NA	NA	99	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.125000	0.805970	
mm_137859.1	chr17	31115437	31115637	+	1	NA	NA	NA	14074	NM_011575	21786	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.020000	0.378109	77(TTTTTTATAGAG,+,0.00)
mm_36720.1	chr4	98726536	98726736	-	1	NA	NA	NA	-118	NM_001081202	381591	Mm.34340	NM_001081202	ENSMUSG00000087166	L1td1	AA546746|AB211064|D76865|ECAT11	LINE-1 type transposase domain containing 1	protein-coding	0.050000	0.567164	
mm_110175.1	chr12	27336826	27337026	-	1	NA	NA	NA	5792	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.010000	0.427861	-50(CAGTATAAAAGT,-,0.00)
mm_27499.1	chr3	55055008	55055208	-	1	NA	NA	NA	-53	NM_001305221	12427	Mm.4815	NM_007628	ENSMUSG00000027793	Ccna1	-	cyclin A1	protein-coding	0.110000	0.721393	
mm_10399.1	chr2	13575256	13575456	+	1	NA	NA	NA	1045	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.005000	0.527363	
mm_132208.1	chr16	32608860	32609060	+	1	NA	NA	NA	64	NM_011638	22042	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0.080000	0.651741	
mm_65538.1	chr7	25816602	25816802	-	1	NA	NA	NA	-172	NM_028775	74134	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0.050000	0.606965	
mm_139526.1	chr17	56647651	56647851	+	1	NA	NA	NA	19608	NM_175350	106757	Mm.23401	NM_175350	ENSMUSG00000040828	Catsperd	4921529N20Rik|4933402B14Rik|619718|AW045609|Gm6095|Tmem146	catsper channel auxiliary subunit delta	protein-coding	0.025000	0.442786	-74(GTGTCTAAATGG,-,0.00)
mm_85025.1	chr9	88443982	88444182	-	1	NA	NA	NA	-5131	NM_172926	244962	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0.000000	0.412935	
mm_103462.1	chr11	76399045	76399245	-	1	NA	NA	NA	-4	NM_008750	18230	Mm.27915	NM_008750	ENSMUSG00000020844	Nxn	l11Jus13	nucleoredoxin	protein-coding	0.130000	0.796020	
mm_165038.1	chr19	38040604	38040804	-	1	NA	NA	NA	2873	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.000000	0.522388	-22(AGCTCTTAAAGG,-,0.00),-21(GCTCTTAAAGGT,+,0.00)
mm_30498.1	chr3	157900326	157900526	-	1	NA	NA	NA	24637	NM_145953	107869	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	0.000000	0.452736	
mm_22041.1	chr2	168207003	168207203	-	1	NA	NA	NA	9	NM_009628	11538	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0.085000	0.666667	
mm_89947.1	chr10	111284245	111284445	+	1	NA	NA	NA	-14334	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.000000	0.293532	-26(TTTTTTAAAAGC,-,0.00),-25(TTTTTAAAAGCC,+,0.00),-15(CCATTTCTAGGG,+,0.00)
mm_96349.1	chr11	66956588	66956788	+	1	NA	NA	NA	50	NR_130315	71576	Mm.340077	NR_130315	ENSMUSG00000085683	9130409J20Rik	-	RIKEN cDNA 9130409J20 gene	ncRNA	0.030000	0.552239	
mm_60710.1	chr7	45241012	45241212	+	1	NA	NA	NA	359	NM_001324535	381884	Mm.490944	NM_001324535	ENSMUSG00000094152	Slc6a16	Gm1084	solute carrier family 6, member 16	protein-coding	0.075000	0.661692	
mm_136912.1	chr17	13016954	13017154	+	1	NA	NA	NA	9215	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.005000	0.407960	56(CTTTTTATACAA,+,0.00)
mm_39766.1	chr5	30013289	30013489	+	1	NA	NA	NA	275	NM_031168	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.025000	0.562189	
mm_162723.1	chr10	38169733	38169933	+	1	NA	NA	NA	-5941	NR_131035	75877	Mm.402094	NR_131035	ENSMUSG00000111234	4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA	0.000000	0.402985	
mm_120257.1	chr14	63046747	63046947	+	1	NA	NA	NA	-144	NM_001034910	619548	Mm.387101	NM_001034910	ENSMUSG00000054763	Defb42	BD-42|Defb44|mBD-42	defensin beta 42	protein-coding	0.000000	0.512438	
mm_11204.1	chr2	29181080	29181280	+	1	NA	NA	NA	56188	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.010000	0.547264	
mm_64071.1	chr7	140905918	140906118	+	1	NA	NA	NA	-46	NR_015583	212965	Mm.387212	NR_015583	ENSMUSG00000109628	BC024386	BC039766	cDNA sequence BC023486	ncRNA	0.000000	0.407960	
mm_8976.1	chr1	165460433	165460633	-	1	NA	NA	NA	-70	NM_028759	74106	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	0.090000	0.671642	
mm_48000.1	chr5	136161117	136161317	-	1	NA	NA	NA	9439	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.010000	0.477612	
mm_169742.1	chr15	86194914	86195114	+	1	NA	NA	NA	-8873	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.065000	0.552239	
mm_30551.1	chr4	3693898	3694098	+	1	NA	NA	NA	15877	NM_010747	17096	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.000000	0.507463	
mm_126843.1	chr15	89075917	89076117	+	1	NA	NA	NA	-47	NM_026485	67976	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	0.165000	0.830846	
mm_58928.1	chr7	17973274	17973474	+	1	NA	NA	NA	1207	NM_023289	66996	Mm.36666	NM_023289	ENSMUSG00000030368	Ceacam11	1600015D01Rik	carcinoembryonic antigen-related cell adhesion molecule 11	protein-coding	0.000000	0.417910	
mm_91062.1	chr10	18996386	18996586	-	1	NA	NA	NA	15477	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.000000	0.452736	
mm_86543.1	chr10	8903870	8904070	+	1	NA	NA	NA	-17900	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.015000	0.467662	
mm_90006.1	chr10	112931324	112931524	+	1	NA	NA	NA	-2398	NM_001033474	382423	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132|ENSMUSG00000074747	ataxin 7-like 3B	protein-coding	0.010000	0.393035	-66(CTCTTTTAAAGA,-,0.00),-65(TCTTTTAAAGAG,+,0.00)
mm_88098.1	chr10	68723823	68724023	+	1	NA	NA	NA	177	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.050000	0.666667	
mm_128964.1	chr15	74832008	74832208	-	1	NA	NA	NA	9535	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.010000	0.447761	
mm_35453.1	chr4	40697251	40697451	-	1	NA	NA	NA	5565	NM_025545	66408	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0.025000	0.512438	-10(GTTTTTAGAGCT,+,0.00)
mm_110324.1	chr12	34874715	34874915	-	1	NA	NA	NA	42280	NM_001271386	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.010000	0.482587	
mm_90529.1	chr10	128085964	128086164	+	1	NA	NA	NA	778	NR_030442	751518		NR_030442	ENSMUSG00000093245	Mir677	Mirn677|mir-677|mmu-mir-677	microRNA 677	ncRNA	0.030000	0.482587	
mm_84754.1	chr9	75566629	75566829	-	1	NA	NA	NA	-7072	NM_016963	50875	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0.000000	0.358209	
mm_129978.1	chr15	86004887	86005087	-	1	NA	NA	NA	28790	NM_009886	12614	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	0.035000	0.447761	
mm_165167.1	chr2	25617682	25617882	+	1	NA	NA	NA	-104	NM_029859	77058	Mm.478493	NM_029859	ENSMUSG00000026940	Ccdc183	4921530D09Rik|Cccd183|Kiaa1984	coiled-coil domain containing 183	protein-coding	0.005000	0.452736	
mm_71534.1	chr8	46986787	46986987	+	1	NA	NA	NA	0	NM_177304	320981	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.000000	0.477612	-60(CCCTTTAAATTC,+,0.00)
mm_57114.1	chr6	122596373	122596573	-	1	NA	NA	NA	5971	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.010000	0.328358	
mm_91714.1	chr10	44423888	44424088	-	1	NA	NA	NA	34760	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.025000	0.527363	
mm_96210.1	chr11	62281376	62281576	+	1	NA	NA	NA	3	NM_029704	72795	Mm.489722	NM_028360	ENSMUSG00000042298	Ttc19	2010204O13Rik|2810460C24Rik|AI505442	tetratricopeptide repeat domain 19	protein-coding	0.145000	0.741294	
mm_82279.1	chr9	7358248	7358448	-	1	NA	NA	NA	10974	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.393035	
mm_47992.1	chr5	135962170	135962370	-	1	NA	NA	NA	12206	NM_001160366	109267	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0.030000	0.507463	
mm_86042.1	chr9	114496444	114496644	-	1	NA	NA	NA	0	NM_009916	12773	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	0.015000	0.532338	
mm_163593.1	chr13	41468263	41468463	-	1	NA	NA	NA	18997	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.005000	0.422886	
mm_43402.1	chr5	135851336	135851536	+	1	NA	NA	NA	33330	NM_021403	58212	Mm.271230	NM_021403	ENSMUSG00000039860	Srrm3	2900083I11Rik|AB041661|SRm300-like|Srrm2l	serine/arginine repetitive matrix 3	protein-coding	0.020000	0.522388	
mm_99533.1	chr11	103192599	103192799	+	1	NA	NA	NA	15849	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.050000	0.626866	
mm_135070.1	chr16	34255335	34255535	-	1	NA	NA	NA	258592	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.000000	0.482587	
mm_103800.1	chr11	82908140	82908340	-	1	NA	NA	NA	155	NM_145431	217011	Mm.29176	NM_145431	ENSMUSG00000020692	Nle1	AL022765|BC018399|Nle|l11Jus1|l11Jus4	notchless homolog 1 (Drosophila)	protein-coding	0.105000	0.696517	
mm_40578.1	chr5	64092855	64093055	+	1	NA	NA	NA	5	NM_025700	66681	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	0.100000	0.701493	
mm_9729.1	chr1	180199471	180199671	-	1	NA	NA	NA	-3551	NM_023341	67426	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0.005000	0.452736	
mm_102229.1	chr11	54910275	54910475	-	1	NA	NA	NA	7521	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.015000	0.567164	11(CCTTTACTGGGC,+,0.00)
mm_19246.1	chr2	84743657	84743857	-	1	NA	NA	NA	-2579	NR_029544	387149		NR_029544	ENSMUSG00000065484	Mir130a	Mirn130|Mirn130a|mir-130a	microRNA 130a	ncRNA	0.035000	0.572139	
mm_47424.1	chr5	123171874	123172074	-	1	NA	NA	NA	10712	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.030000	0.577114	
mm_110216.1	chr12	28623261	28623461	-	1	NA	NA	NA	-31	NM_027866	71693	Mm.30724	NM_027866	ENSMUSG00000036655	Colec11	CL-K1	collectin sub-family member 11	protein-coding	0.010000	0.577114	
mm_148653.1	chr19	5493689	5493889	+	1	NA	NA	NA	3334	NM_007687	12631	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.020000	0.482587	
mm_85943.1	chr9	112099899	112100099	-	1	NA	NA	NA	18712	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.005000	0.422886	
mm_166358.1	chr5	122500830	122501030	+	1	NA	NA	NA	1295	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.025000	0.338308	
mm_28724.1	chr3	95685498	95685698	-	1	NA	NA	NA	2319	NM_144899	229595	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.015000	0.631841	
mm_118228.1	chr13	111482228	111482428	-	1	NA	NA	NA	7713	NM_028487	73274	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.000000	0.348259	67(TTATTTAAAAGG,-,0.00)
mm_33870.1	chr4	135968559	135968759	+	1	NA	NA	NA	3494	NM_178389	74246	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0.060000	0.681592	
mm_167985.1	chrX	169978820	169979020	-	1	NA	NA	NA	-3	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.015000	0.482587	-60(CAGTTTTAAAGA,-,0.00)
mm_79959.1	chr9	66189154	66189354	+	1	NA	NA	NA	31028	NM_010019	13143	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	0.005000	0.452736	
mm_59162.1	chr7	24386459	24386659	+	1	NA	NA	NA	-13069	NM_028047	71997	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.015000	0.472637	
mm_96747.1	chr11	69847378	69847578	+	1	NA	NA	NA	834	NR_033133	70310	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	0.040000	0.666667	
mm_156461.1	chrX	143059011	143059211	+	1	NA	NA	NA	-40483	NM_001040434	209540	Mm.297608	NM_001040434	ENSMUSG00000085584	Rgag1	Gm385|Mar9|Mart9	retrotransposon gag domain containing 1	protein-coding	0.025000	0.587065	
mm_121326.1	chr14	114945899	114946099	+	1	NA	NA	NA	-51	NR_126548	74982		NR_126548		1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	0.020000	0.487562	
mm_139751.1	chr17	63863905	63864105	+	1	NA	NA	NA	24	NM_001037997	14158	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.105000	0.671642	
mm_20787.1	chr2	143990035	143990235	-	1	NA	NA	NA	21128	NM_133626	81910	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.040000	0.502488	
mm_169589.1	chr15	26681557	26681757	-	1	NA	NA	NA	213907	NM_176959	448987	Mm.253378	NM_176959	ENSMUSG00000043556	Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding	0.050000	0.651741	
mm_154921.1	chrX	23688919	23689119	+	1	NA	NA	NA	-4032	NM_175180	72404	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	0.005000	0.402985	
mm_65377.1	chr7	25088579	25088779	-	1	NA	NA	NA	8496	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.025000	0.616915	
mm_3812.1	chr1	158691210	158691410	+	1	NA	NA	NA	185685	NR_030441	735253		NR_030441	ENSMUSG00000070103	Mir488	Mirn488|mir-488|mmu-mir-488	microRNA 488	ncRNA	0.005000	0.417910	
mm_151716.1	chr19	4759116	4759316	-	1	NA	NA	NA	2691	NM_025717	66704	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	0.005000	0.388060	
mm_63130.1	chr7	123001700	123001900	+	1	NA	NA	NA	31236	NM_175023	19647	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6	protein-coding	0.020000	0.512438	
mm_109181.1	chr12	108450314	108450514	+	1	NA	NA	NA	27598	NM_001043335	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.010000	0.507463	
mm_100433.1	chr11	119468961	119469161	+	1	NA	NA	NA	-22286	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.010000	0.467662	
mm_26349.1	chr3	142548043	142548243	+	1	NA	NA	NA	-11909	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.015000	0.393035	
mm_85235.1	chr9	98033153	98033353	-	1	NA	NA	NA	-86	NM_022319	64085	Mm.440903	NM_022319	ENSMUSG00000032452	Clstn2	2900042C18Rik|AI448973|CSTN2|Cs2|Cst-2|mKIAA4134	calsyntenin 2	protein-coding	0.135000	0.716418	
mm_80430.1	chr9	77921634	77921834	+	1	NA	NA	NA	4369	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.015000	0.442786	66(CCCCATTAAAGA,-,0.00)
mm_59859.1	chr7	29983882	29984082	+	1	NA	NA	NA	27	NM_001167872	243905	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	0.110000	0.701493	
mm_90807.1	chr10	7664044	7664244	-	1	NA	NA	NA	-536	NM_001347228	18537	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	0.015000	0.422886	
mm_94039.1	chr10	128058717	128058917	-	1	NA	NA	NA	-165	NM_019766	56351	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3 (cytosolic)	protein-coding	0.140000	0.741294	
mm_51472.1	chr6	82960444	82960644	+	1	NA	NA	NA	13622	NM_033079	110958	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	0.005000	0.507463	
mm_145565.1	chr18	60812400	60812600	+	1	NA	NA	NA	424	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.005000	0.577114	
mm_42852.1	chr5	122209877	122210077	+	1	NA	NA	NA	248	NM_001042489	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.040000	0.636816	
mm_19435.1	chr2	91963501	91963701	-	1	NA	NA	NA	-38	NM_138306	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.150000	0.791045	
mm_76956.1	chr8	106052457	106052657	-	1	NA	NA	NA	-7046	NM_010901	18021	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.010000	0.472637	
mm_69692.1	chr7	139992428	139992628	-	1	NA	NA	NA	34	NM_007403	11501	Mm.15969	NM_007403	ENSMUSG00000025473	Adam8	ADAM 8|CD156|CD156a|E430039A18Rik|MS2	a disintegrin and metallopeptidase domain 8	protein-coding	0.030000	0.557214	
mm_47625.1	chr5	125277750	125277950	-	1	NA	NA	NA	63244	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.015000	0.592040	
mm_130147.1	chr15	91017894	91018094	-	1	NA	NA	NA	31957	NM_001109041	16564	Mm.41379	NM_016705	ENSMUSG00000022629	Kif21a	-	kinesin family member 21A	protein-coding	0.020000	0.492537	
mm_34565.1	chr4	149854489	149854689	+	1	NA	NA	NA	-80322	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.065000	0.552239	
mm_87531.1	chr10	53344861	53345061	+	1	NA	NA	NA	7275	NM_001141927	18821	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0.005000	0.368159	
mm_20136.1	chr2	121409907	121410107	-	1	NA	NA	NA	3785	NM_153075	212670	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	0.015000	0.422886	
mm_127017.1	chr15	95965800	95966000	+	1	NA	NA	NA	113653	NR_126493	402773	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0.020000	0.467662	
mm_36017.1	chr4	56947330	56947530	-	1	NA	NA	NA	-1	NM_175518	242474	Mm.296632	NM_175518	ENSMUSG00000055296	Tmem245	A630051L19Rik|AI957324|D730040F13Rik	transmembrane protein 245	protein-coding	0.135000	0.756219	
mm_141316.1	chr17	28364476	28364676	-	1	NA	NA	NA	567	NM_021478	22157	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.035000	0.592040	
mm_60803.1	chr7	45627808	45628008	+	1	NA	NA	NA	371	NM_028544	69903	Mm.181396	NM_028544	ENSMUSG00000044562	Rasip1	1110025D03Rik|2610025P08Rik|AI853551|Rain	Ras interacting protein 1	protein-coding	0.030000	0.552239	
mm_156393.1	chrX	139805966	139806166	+	1	NA	NA	NA	5258	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.015000	0.467662	
mm_135613.1	chr16	52270617	52270817	-	1	NA	NA	NA	182364	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.398010	89(GCATTAAAACCG,+,0.00)
mm_28294.1	chr3	89093271	89093471	-	1	NA	NA	NA	-8	NM_028188	72296	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.070000	0.651741	
mm_64028.1	chr7	140769042	140769242	+	1	NA	NA	NA	5310	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.020000	0.477612	
mm_57693.1	chr6	128521951	128522151	-	1	NA	NA	NA	4669	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.010000	0.452736	
mm_62566.1	chr7	104218807	104219007	+	1	NA	NA	NA	112	NM_001013616	94088	Mm.274843	NM_001013616	ENSMUSG00000072244	Trim6	C430046K18Rik|D7Ertd684e	tripartite motif-containing 6	protein-coding	0.040000	0.537313	
mm_988.1	chr1	58586326	58586526	+	1	NA	NA	NA	29	NM_025597	66495	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	0.045000	0.492537	
mm_111292.1	chr12	85471780	85471980	-	1	NA	NA	NA	-2021	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.030000	0.472637	
mm_112554.1	chr13	12565774	12565974	+	1	NA	NA	NA	-9	NM_026184	67475	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	0.075000	0.666667	
mm_147293.1	chr18	39490799	39490999	-	1	NA	NA	NA	-3654	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.055000	0.527363	
mm_159803.1	chr5	113735728	113735928	+	1	NA	NA	NA	46	NM_001010825	231630	Mm.21926	NM_001010825	ENSMUSG00000053334	Ficd	D5Ertd40e|Hype	FIC domain containing	protein-coding	0.135000	0.756219	
mm_16837.1	chr2	11499463	11499663	-	1	NA	NA	NA	2527	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.005000	0.393035	
mm_124474.1	chr14	121379138	121379338	-	1	NA	NA	NA	-8	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.180000	0.835821	
mm_130389.1	chr15	97869277	97869477	-	1	NA	NA	NA	-24875	NM_001204278	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.020000	0.527363	-95(CCTCAAATAGGG,+,0.00)
mm_29917.1	chr3	131489824	131490024	-	1	NA	NA	NA	-74844	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.045000	0.601990	
mm_48928.1	chr6	4521305	4521505	+	1	NA	NA	NA	15787	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.025000	0.527363	
mm_35247.1	chr4	19877525	19877725	-	1	NA	NA	NA	44941	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.010000	0.348259	
mm_21478.1	chr2	162660954	162661154	-	1	NA	NA	NA	93	NM_001291151	19281	Mm.235807	NM_021464	ENSMUSG00000053141	Ptprt	R-PTP-T|RPTP-rfo|RPTP-rho|RPTPmam4|RPTPrho|mKIAA0283|mRPTPrho	protein tyrosine phosphatase, receptor type, T	protein-coding	0.170000	0.830846	
mm_6823.1	chr1	84198333	84198533	-	1	NA	NA	NA	20528	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.348259	
mm_46746.1	chr5	111417032	111417232	-	1	NA	NA	NA	-1034	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.130000	0.766169	
mm_54624.1	chr6	38637134	38637334	-	1	NA	NA	NA	5	NM_001033171	74253	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0.090000	0.621891	
mm_86737.1	chr10	19122385	19122585	+	1	NA	NA	NA	-19264	NR_038021	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.015000	0.467662	
mm_138120.1	chr17	34145128	34145328	+	1	NA	NA	NA	-188	NM_010388	15000	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0.010000	0.502488	
mm_139575.1	chr17	57062405	57062605	+	1	NA	NA	NA	228	NM_177638	224912	Mm.284447	NM_177638	ENSMUSG00000044279	Crb3	5730439B18|AU015179|AU041752	crumbs family member 3	protein-coding	0.055000	0.661692	
mm_116198.1	chr13	31820504	31820704	-	1	NA	NA	NA	13958	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.025000	0.422886	
mm_170825.1	chr2	176798478	176798678	+	1	NA	NA	NA	-22	NM_001205057	100039123	Mm.389409	NM_001205057	ENSMUSG00000078877	Gm14295	OTTMUSG00000016219	predicted gene 14295	protein-coding	0.015000	0.492537	
mm_83061.1	chr9	37545974	37546174	-	1	NA	NA	NA	6671	NM_022029	64011	Mm.335065	NM_022029	ENSMUSG00000053310	Nrgn	0710001B06Rik|AI838505|NG|NG/RC3|Pss1|R75334|RC3	neurogranin	protein-coding	0.095000	0.676617	
mm_35392.1	chr4	34049944	34050144	-	1	NA	NA	NA	21	NM_001290443	67652	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.105000	0.691542	
mm_157985.1	chrX	94177759	94177959	-	1	NA	NA	NA	34792	NM_012010	26905	Mm.218851	NM_012010	ENSMUSG00000035150	Eif2s3x	AA409828|AA547477|AI314668|Eif-2gx	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	protein-coding	0.045000	0.577114	
mm_168737.1	chr12	115145871	115146071	-	1	NA	NA	NA	549823	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.000000	0.407960	
mm_15746.1	chr2	164237417	164237617	+	1	NA	NA	NA	824	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.447761	
mm_26704.1	chr3	157768002	157768202	+	1	NA	NA	NA	156961	NM_145953	107869	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	0.005000	0.457711	
mm_122543.1	chr14	47649139	47649339	-	1	NA	NA	NA	-72	NM_001347527	16709	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	0.125000	0.736318	-16(GCCCCTTAAAGG,-,0.00),-15(CCCCTTAAAGGG,+,0.00),-15(CCCCTTAAAGGG,-,0.00),-14(CCCTTAAAGGGA,+,0.00),-13(CCTTAAAGGGAC,+,0.00)
mm_124438.1	chr14	118706063	118706263	-	1	NA	NA	NA	56	NM_001163676	239273	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.145000	0.766169	
mm_63006.1	chr7	120851089	120851289	+	1	NA	NA	NA	0	NM_001267711	13631	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.015000	0.522388	
mm_74852.1	chr8	24674624	24674824	-	1	NA	NA	NA	31	NR_136908	13524	Mm.89943	NM_010084	ENSMUSG00000031552	Adam18	Adam27|Dtgn3|Tmdc3|tMDCIII	a disintegrin and metallopeptidase domain 18	protein-coding	0.055000	0.646766	
mm_122693.1	chr14	52066065	52066265	-	1	NA	NA	NA	-3150	NR_028552	100217457		NR_028552	ENSMUSG00000064871	Snord58b	MBII-199	small nucleolar RNA, C/D box 58B	snoRNA	0.010000	0.552239	-34(CCCTTTATAAGC,+,0.00),-34(CCCTTTATAAGC,-,0.00),-32(CTTTATAAGCAC,+,0.00)
mm_92943.1	chr10	85099318	85099518	-	1	NA	NA	NA	3077	NM_010214	14202	Mm.46163	NM_010214	ENSMUSG00000050035	Fhl4	-	four and a half LIM domains 4	protein-coding	0.005000	0.368159	-80(CTCTTTATAGGT,+,0.00)
mm_153810.1	chr19	46045255	46045455	-	1	NA	NA	NA	-144	NM_001113408	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.140000	0.676617	
mm_18718.1	chr2	72446283	72446483	-	1	NA	NA	NA	-29836	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.010000	0.492537	
mm_7368.1	chr1	106724383	106724583	-	1	NA	NA	NA	-10193	NM_177410	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.010000	0.268657	
mm_151446.1	chr19	57610854	57611054	+	1	NA	NA	NA	-80	NM_181415	226255	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0.155000	0.815920	
mm_167363.1	chr8	84969612	84969812	+	1	NA	NA	NA	90	NM_011563	21672	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0.065000	0.597015	-52(ACGCATAAAAGG,-,0.00)
mm_126826.1	chr15	88858525	88858725	+	1	NA	NA	NA	-3569	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.005000	0.562189	
mm_161877.1	chr18	37294719	37294919	+	1	NA	NA	NA	-21	NM_053127	93873	Mm.197508	NM_053127	ENSMUSG00000051599	Pcdhb2	PcdhbB	protocadherin beta 2	protein-coding	0.035000	0.502488	
mm_104604.1	chr11	97187564	97187764	-	1	NA	NA	NA	228	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.085000	0.726368	
mm_52327.1	chr6	108844569	108844769	+	1	NA	NA	NA	16028	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.005000	0.393035	
mm_39979.1	chr5	32458963	32459163	+	1	NA	NA	NA	93	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.110000	0.701493	
mm_30742.1	chr4	14863906	14864106	+	1	NA	NA	NA	-213	NM_028264	72519	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360	transmembrane protein 55A	protein-coding	0.015000	0.547264	-80(TAGTTTAAAAGA,-,0.00)
mm_74797.1	chr8	22398500	22398700	-	1	NA	NA	NA	21	NM_181325	18408	Mm.200907	NM_181325	ENSMUSG00000031482	Slc25a15	D630044L02Rik|Ornt1	solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15	protein-coding	0.075000	0.731343	
mm_149743.1	chr19	22448032	22448232	+	1	NA	NA	NA	-76	NM_177341	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.035000	0.567164	
mm_112728.1	chr13	19192825	19193025	+	1	NA	NA	NA	202888	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.492537	-22(GCCCAGAAAAGC,-,0.00)
mm_95879.1	chr11	58093147	58093347	+	1	NA	NA	NA	-10906	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.030000	0.512438	
mm_60296.1	chr7	44015875	44016075	+	1	NA	NA	NA	3278	NM_010115	13647	Mm.439663	NM_010115		Egfbp2	Egfbp-2|Klk1b26|mGk-13	epidermal growth factor binding protein type B	protein-coding	0.010000	0.527363	
mm_100345.1	chr11	118419137	118419337	+	1	NA	NA	NA	-119	NM_001267592	76025	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	0.060000	0.567164	
mm_146064.1	chr18	69925408	69925608	+	1	NA	NA	NA	-51	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.050000	0.646766	
mm_132055.1	chr16	29579333	29579533	+	1	NA	NA	NA	99	NM_001199177	74143	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	0.070000	0.636816	
mm_2760.1	chr1	130462192	130462392	+	1	NA	NA	NA	452	NM_010016	13136	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0.055000	0.552239	
mm_144607.1	chr18	32407512	32407712	+	1	NA	NA	NA	-29328	NR_045403	402767	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.015000	0.562189	-99(GTCCCTTTAAGG,-,0.00),-97(CCCTTTAAGGCA,+,0.00),-96(CCTTTAAGGCAG,+,0.00)
mm_145693.1	chr18	62180051	62180251	+	1	NA	NA	NA	-170	NM_007420	11555	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.060000	0.716418	
mm_32872.1	chr4	118526949	118527149	+	1	NA	NA	NA	-226	NM_025572	66451	Mm.34431	NM_025572	ENSMUSG00000028536	2610528J11Rik	TEMP	RIKEN cDNA 2610528J11 gene	protein-coding	0.015000	0.527363	
mm_52318.1	chr6	108836234	108836434	+	1	NA	NA	NA	7693	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.025000	0.502488	
mm_47488.1	chr5	123891699	123891899	-	1	NA	NA	NA	-11779	NM_175520	243270	Mm.33362	NM_175520	ENSMUSG00000049241	Hcar1	Gpr81	hydrocarboxylic acid receptor 1	protein-coding	0.015000	0.552239	
mm_147232.1	chr18	38250034	38250234	-	1	NA	NA	NA	64	NR_015475	73516	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0.070000	0.621891	
mm_145068.1	chr18	41579379	41579579	+	1	NA	NA	NA	371715	NM_029942	77619	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	0.000000	0.457711	
mm_36847.1	chr4	106727891	106728091	-	1	NA	NA	NA	-61	NM_001126487	381538	Mm.318201	NM_001126487	ENSMUSG00000047502	Mroh7	Gm1027|Heatr8	maestro heat-like repeat family member 7	protein-coding	0.025000	0.547264	-93(CTCTTTTTAAAG,-,0.00),-91(CTTTTTAAAGAC,+,0.00)
mm_47692.1	chr5	129670009	129670209	-	1	NA	NA	NA	-21	NM_172462	22648	Mm.135067	NM_172462	ENSMUSG00000051034	Zfp11	6720465D24|Krox-6|Zfp-11	zinc finger protein 11	protein-coding	0.095000	0.626866	
mm_65207.1	chr7	19697461	19697661	-	1	NA	NA	NA	837	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.035000	0.582090	
mm_145007.1	chr18	38428662	38428862	+	1	NA	NA	NA	9787	NM_022996	65113	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.010000	0.407960	-55(CTTTTTATACTT,+,0.00)
mm_156729.1	chrX	159917133	159917333	+	1	NA	NA	NA	-25460	NM_001290661	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.005000	0.328358	
mm_12521.1	chr2	72145502	72145702	+	1	NA	NA	NA	90985	NM_001204166	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.015000	0.492537	-37(TGCTATAAAAGT,-,0.00)
mm_13547.1	chr2	112239287	112239487	+	1	NA	NA	NA	-454	NM_207206	99010	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.145000	0.721393	
mm_39250.1	chr5	3501903	3502103	+	1	NA	NA	NA	-41830	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.015000	0.407960	-26(ACCTTTAGAGCC,+,0.00),32(CTGCTTATAAGC,-,0.00),34(GCTTATAAGCCT,+,0.00)
mm_75630.1	chr8	64692933	64693133	-	1	NA	NA	NA	76	NM_013494	12876	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|R74677|fat	carboxypeptidase E	protein-coding	0.120000	0.726368	
mm_124685.1	chr15	6435107	6435307	+	1	NA	NA	NA	-10126	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.020000	0.517413	
mm_147462.1	chr18	46612134	46612334	-	1	NA	NA	NA	14530	NM_010120	13664	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.015000	0.457711	
mm_31478.1	chr4	51659092	51659292	+	1	NA	NA	NA	391918	NR_040668	329844	Mm.128934	NR_040668	ENSMUSG00000085515	C630028M04Rik	-	RIKEN cDNA C630028M04 gene	ncRNA	0.005000	0.313433	-13(AGCTATATAAGG,-,0.00)
mm_80112.1	chr9	70526786	70526986	+	1	NA	NA	NA	-15892	NM_026337	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.005000	0.393035	
mm_112216.1	chr12	113428695	113428895	-	1	NA	NA	NA	-60770	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.502488	
mm_76558.1	chr8	88362082	88362282	-	1	NA	NA	NA	9	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.165000	0.726368	
mm_12685.1	chr2	75892176	75892376	+	1	NA	NA	NA	46186	NM_028235	72421	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	0.005000	0.368159	
mm_67864.1	chr7	99141009	99141209	-	1	NA	NA	NA	35	NM_178635	78610	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.085000	0.671642	
mm_156790.1	chrX	162760273	162760473	+	1	NA	NA	NA	1	NM_009031	245688	Mm.270186	NM_009031	ENSMUSG00000031353	Rbbp7	AA409861|AI173248|AU019541|BB114024|mRbAp46	retinoblastoma binding protein 7	protein-coding	0.095000	0.671642	
mm_139974.1	chr17	71781148	71781348	+	1	NA	NA	NA	-51	NM_001271483	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	0.015000	0.522388	
mm_103494.1	chr11	76571254	76571454	-	1	NA	NA	NA	30	NM_198895	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.100000	0.716418	
mm_35885.1	chr4	49541114	49541314	-	1	NA	NA	NA	8332	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.015000	0.517413	
mm_164312.1	chr15	103897448	103897648	-	1	NA	NA	NA	1752	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.005000	0.388060	
mm_52291.1	chr6	108665821	108666021	+	1	NA	NA	NA	-4987	NR_104577	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.015000	0.497512	
mm_120733.1	chr14	73152489	73152689	+	1	NA	NA	NA	9804	NR_033185	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.020000	0.432836	
mm_132664.1	chr16	42149090	42149290	+	1	NA	NA	NA	154279	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0.000000	0.278607	
mm_123273.1	chr14	61370362	61370562	-	1	NA	NA	NA	-10017	NM_026598	68177	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0.005000	0.422886	
mm_58031.1	chr6	136662142	136662342	-	1	NA	NA	NA	-349	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.030000	0.562189	
mm_44106.1	chr5	149368318	149368518	+	1	NA	NA	NA	-43388	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.015000	0.462687	38(GTCCCTAAAGGC,-,0.00)
mm_12672.1	chr2	75768825	75769025	+	1	NA	NA	NA	-63252	NM_172666	228061	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.005000	0.457711	
mm_44485.1	chr5	23518702	23518902	-	1	NA	NA	NA	84373	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.010000	0.492537	
mm_121442.1	chr14	120430107	120430307	+	1	NA	NA	NA	-48254	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.005000	0.218905	-9(TACTATATATGG,-,0.00)
mm_162286.1	chr1	24612589	24612789	+	1	NA	NA	NA	-25252	NM_007733	12823	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.010000	0.333333	
mm_108609.1	chr12	85475491	85475691	+	1	NA	NA	NA	1690	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.035000	0.512438	
mm_2812.1	chr1	130874229	130874429	+	1	NA	NA	NA	8552	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.020000	0.467662	
mm_56863.1	chr6	118350361	118350561	-	1	NA	NA	NA	-41742	NR_110507	102632423	Mm.261755	NR_110507	ENSMUSG00000107933	Gm30498	-	predicted gene, 30498	ncRNA	0.030000	0.562189	
mm_110589.1	chr12	56529453	56529653	-	1	NA	NA	NA	-133	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.035000	0.616915	
mm_19859.1	chr2	113829559	113829759	-	1	NA	NA	NA	-568	NM_009162	20394	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	0.005000	0.402985	42(ACTTTTAGGGCC,+,0.00)
mm_170517.1	chr19	30539680	30539880	-	1	NA	NA	NA	-101	NR_003650	546723	Mm.301509	NM_001037169		Ppp1r2-ps3	EG546723|Gm5972	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 3	pseudo	0.105000	0.557214	
mm_173254.1	chrX	94615738	94615938	+	1	NA	NA	NA	-20231	NM_008179	14853	Mm.20826	NM_008179	ENSMUSG00000071723	Gspt2	-	G1 to S phase transition 2	protein-coding	0.030000	0.527363	
mm_140255.1	chr17	84466257	84466457	+	1	NA	NA	NA	-149	NM_183021	240174	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.045000	0.577114	
mm_167483.1	chr8	129252827	129253027	+	1	NA	NA	NA	-10703	NM_001346808	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	0.015000	0.462687	
mm_148744.1	chr19	6046009	6046209	+	1	NA	NA	NA	-467	NM_028769	74126	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0.035000	0.522388	
mm_40273.1	chr5	41187617	41187817	+	1	NA	NA	NA	519974	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.005000	0.442786	
mm_112906.1	chr13	20902877	20903077	+	1	NA	NA	NA	108864	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.452736	
mm_125989.1	chr15	76351220	76351420	+	1	NA	NA	NA	26	NM_026859	68877	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	0.095000	0.621891	
mm_51251.1	chr6	71831332	71831532	+	1	NA	NA	NA	112	NM_001253688	76614	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	0.135000	0.706468	
mm_133843.1	chr16	96200515	96200715	+	1	NA	NA	NA	145	NM_015825	50795	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0.045000	0.621891	
mm_122332.1	chr14	37109997	37110197	-	1	NA	NA	NA	4	NM_001206684	70045	Mm.271619	NM_001206684	ENSMUSG00000096001	2610528A11Rik	AW494830	RIKEN cDNA 2610528A11 gene	protein-coding	0.030000	0.542289	-34(CCTTATAAATGT,+,0.00)
mm_27987.1	chr3	82074578	82074778	-	1	NA	NA	NA	33	NM_017469	54195	Mm.9445	NM_017469	ENSMUSG00000028005	Gucy1b3	GC-S-beta-1|GCbeta1	guanylate cyclase 1, soluble, beta 3	protein-coding	0.060000	0.616915	
mm_79973.1	chr9	66593428	66593628	+	1	NA	NA	NA	-413	NM_001302122	235441	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.050000	0.567164	
mm_115013.1	chr13	98354682	98354882	+	1	NA	NA	NA	537	NM_008242	15229	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	0.155000	0.766169	
mm_16418.1	chr2	180171468	180171668	+	1	NA	NA	NA	-20	NM_019822	56436	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	0.160000	0.771144	
mm_60998.1	chr7	49303755	49303955	+	1	NA	NA	NA	57666	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.045000	0.522388	
mm_51170.1	chr6	70726506	70726706	+	1	NA	NA	NA	65569	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.030000	0.487562	
mm_46964.1	chr5	115147965	115148165	-	1	NA	NA	NA	10111	NM_175403	109154	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0.015000	0.492537	
mm_60843.1	chr7	45783814	45784014	+	1	NA	NA	NA	-33	NM_001005511	381983	Mm.44928	NM_001005511	ENSMUSG00000062044	Lmtk3	BC059845|aatyk3	lemur tyrosine kinase 3	protein-coding	0.090000	0.681592	
mm_117732.1	chr13	95618359	95618559	-	1	NA	NA	NA	-26	NM_010169	14062	Mm.24816	NM_010169	ENSMUSG00000048376	F2r	AI482343|Cf2r|Par1|ThrR	coagulation factor II (thrombin) receptor	protein-coding	0.130000	0.736318	
mm_71338.1	chr8	45507800	45508000	+	1	NA	NA	NA	112	NM_001205219	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.030000	0.472637	
mm_8326.1	chr1	149922256	149922456	-	1	NA	NA	NA	83	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.005000	0.467662	
mm_66424.1	chr7	44551966	44552166	-	1	NA	NA	NA	1899	NM_009473	22260	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0.080000	0.651741	
mm_71726.1	chr8	61976759	61976959	+	1	NA	NA	NA	48772	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.005000	0.388060	
mm_125456.1	chr15	52040301	52040501	+	1	NA	NA	NA	294	NM_175503	239435	Mm.24204	NM_175503	ENSMUSG00000068522	Aard	A5D3|AV328152	alanine and arginine rich domain containing protein	protein-coding	0.160000	0.766169	
mm_126239.1	chr15	78987032	78987232	+	1	NA	NA	NA	4076	NM_001024716	110253	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.020000	0.601990	
mm_63917.1	chr7	139248333	139248533	+	1	NA	NA	NA	-49	NM_001033206	101631	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.175000	0.830846	
mm_69198.1	chr7	127375874	127376074	-	1	NA	NA	NA	76	NM_175560	269997	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	0.065000	0.547264	
mm_148539.1	chr19	4604437	4604637	+	1	NA	NA	NA	10218	NM_008797	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.055000	0.626866	
mm_48551.1	chr5	142906624	142906824	-	1	NA	NA	NA	30	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.125000	0.666667	-63(CCTTTTATGGCT,+,0.00)
mm_163818.1	chr14	19416536	19416736	-	1	NA	NA	NA	185951	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.030000	0.348259	
mm_79662.1	chr9	59657453	59657653	+	1	NA	NA	NA	1185	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.060000	0.557214	
mm_69982.1	chr7	142380726	142380926	-	1	NA	NA	NA	7044	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.020000	0.517413	
mm_118807.1	chr14	25459116	25459316	+	1	NA	NA	NA	31	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.100000	0.597015	
mm_17542.1	chr2	29826935	29827135	-	1	NA	NA	NA	-354	NM_026615	68205	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	0.035000	0.477612	-41(CTGTTTTTAAGC,-,0.00)
mm_18462.1	chr2	62343634	62343834	-	1	NA	NA	NA	68497	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.000000	0.393035	
mm_10812.1	chr2	24350202	24350402	+	1	NA	NA	NA	4931	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.005000	0.373134	
mm_75866.1	chr8	70760862	70761062	-	1	NA	NA	NA	-41	NM_183170	234384	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0.105000	0.656716	
mm_164004.1	chr14	66859408	66859608	+	1	NA	NA	NA	9092	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.010000	0.522388	
mm_36262.1	chr4	63495908	63496108	-	1	NA	NA	NA	-17	NM_001008791	73750	Mm.300397	NM_028640	ENSMUSG00000039137	Whrn	1110035G07Rik|AW122018|AW742671|C430046P22Rik|Dfnb31|Ush2d|wi	whirlin	protein-coding	0.135000	0.781095	
mm_172912.1	chr9	63399273	63399473	+	1	NA	NA	NA	-129	NM_027090	69478	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	0.100000	0.701493	
mm_149423.1	chr19	11447400	11447600	+	1	NA	NA	NA	3942	NM_021718	60361	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	0.000000	0.412935	
mm_152722.1	chr19	18589645	18589845	-	1	NA	NA	NA	42068	NM_017375	20409	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.025000	0.452736	
mm_43270.1	chr5	130384605	130384805	+	1	NA	NA	NA	-74	NM_198665	381673	Mm.192133	NM_198665	ENSMUSG00000052014	A330070K13Rik	Gm1051	RIKEN cDNA A330070K13 gene	protein-coding	0.010000	0.527363	
mm_120662.1	chr14	70545212	70545412	+	1	NA	NA	NA	61	NM_180588	72549	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	0.085000	0.676617	
mm_79626.1	chr9	59291497	59291697	+	1	NA	NA	NA	25	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.130000	0.701493	
mm_29838.1	chr3	129822377	129822577	-	1	NA	NA	NA	28	NM_009102	20132	Mm.278758	NM_009102	ENSMUSG00000028012	Rrh	-	retinal pigment epithelium derived rhodopsin homolog	protein-coding	0.035000	0.487562	
mm_67629.1	chr7	84151943	84152143	-	1	NA	NA	NA	-150	NM_133722	70178	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.190000	0.840796	
mm_115971.1	chr13	24059222	24059422	-	1	NA	NA	NA	-68108	NM_145399	214189	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.000000	0.472637	
mm_113158.1	chr13	24802865	24803065	+	1	NA	NA	NA	1308	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.020000	0.402985	
mm_56635.1	chr6	113077092	113077292	-	1	NA	NA	NA	52	NR_027010	14910	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	0.100000	0.706468	
mm_147853.1	chr18	63692258	63692458	-	1	NA	NA	NA	1	NM_016792	53382	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.135000	0.761194	
mm_168888.1	chr1	24613869	24614069	-	1	NA	NA	NA	-26532	NM_007733	12823	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.005000	0.368159	59(CCTTTTCAGCCC,+,0.00)
mm_168831.1	chr12	22745606	22745806	-	1	NA	NA	NA	264537	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA	0.120000	0.736318	
mm_164676.1	chr17	46555113	46555313	+	1	NA	NA	NA	949	NM_020493	20807	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0.085000	0.691542	
mm_165452.1	chr2	157319990	157320190	+	1	NA	NA	NA	17336	NM_001329683	14601	Mm.389327	NM_010285	ENSMUSG00000027643	Ghrh	GRF|Ghrf	growth hormone releasing hormone	protein-coding	0.010000	0.467662	
mm_36381.1	chr4	76914631	76914831	-	1	NA	NA	NA	1297164	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.010000	0.243781	
mm_165075.1	chr19	45058221	45058421	-	1	NA	NA	NA	10745	NM_001178013	94280	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.050000	0.552239	
mm_111584.1	chr12	101880444	101880644	-	1	NA	NA	NA	32627	NM_028446	109181	Mm.208618	NM_028446	ENSMUSG00000021188	Trip11	2610511G22Rik|3110031G15Rik|6030460N08Rik|AI450776|GMAP-210|TRIP230	thyroid hormone receptor interactor 11	protein-coding	0.000000	0.388060	
mm_163721.1	chr13	113071249	113071449	+	1	NA	NA	NA	-24961	NM_027127	69590	Mm.12715	NM_027127	ENSMUSG00000021760	Gpx8	2310016C16Rik|AU017063	glutathione peroxidase 8 (putative)	protein-coding	0.010000	0.368159	
mm_18993.1	chr2	76867142	76867342	-	1	NA	NA	NA	115305	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.020000	0.412935	
mm_61624.1	chr7	80198496	80198696	+	1	NA	NA	NA	11755	NM_013659	20352	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.130000	0.756219	
mm_117541.1	chr13	83609146	83609346	-	1	NA	NA	NA	35639	NM_001347569	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.000000	0.462687	
mm_172988.1	chrM	1060	1260	+	1	NA	NA	NA	NA	NA									0.010000	0.328358	
mm_103655.1	chr11	78973077	78973277	-	1	NA	NA	NA	11747	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.025000	0.517413	
mm_168871.1	chr12	3691056	3691256	-	1	NA	NA	NA	-115824	NM_007872	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.035000	0.517413	-33(GGGTATTTAAGG,-,0.00)
mm_48038.1	chr5	136302426	136302626	-	1	NA	NA	NA	-57586	NM_018825	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.010000	0.472637	
mm_162185.1	chrX	103321340	103321540	+	1	NA	NA	NA	42	NM_007674	12592	Mm.4353	NM_007674	ENSMUSG00000031326	Cdx4	Cdx-3|Cdx-4|Cdx3	caudal type homeobox 4	protein-coding	0.045000	0.547264	
mm_21383.1	chr2	157457173	157457373	-	1	NA	NA	NA	32980	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.100000	0.726368	
mm_110870.1	chr12	73725778	73725978	-	1	NA	NA	NA	141082	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.005000	0.457711	
mm_72214.1	chr8	72646602	72646802	+	1	NA	NA	NA	-9	NM_176940	319555	Mm.212927	NM_176940	ENSMUSG00000048148	Nwd1	A230063L24Rik	NACHT and WD repeat domain containing 1	protein-coding	0.025000	0.532338	
mm_141109.1	chr17	26021850	26022050	-	1	NA	NA	NA	-90	NM_153140	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.020000	0.517413	
mm_4743.1	chr1	182124544	182124744	+	1	NA	NA	NA	-93	NM_012058	27058	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	0.050000	0.646766	
mm_161995.1	chr19	37198008	37198208	-	1	NA	NA	NA	0	NM_001290829	208922	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.000000	0.527363	
mm_78652.1	chr9	40341472	40341672	+	1	NA	NA	NA	8100	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.000000	0.482587	
mm_170443.1	chr18	81137405	81137605	-	1	NA	NA	NA	-150927	NM_178280	20689	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	sal-like 3 (Drosophila)	protein-coding	0.000000	0.507463	
mm_58246.1	chr6	145048601	145048801	-	1	NA	NA	NA	111	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.125000	0.681592	
mm_61936.1	chr7	90176181	90176381	+	1	NA	NA	NA	46049	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.402985	
mm_6374.1	chr1	72537060	72537260	-	1	NA	NA	NA	-596	NM_001045533	381270	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	0.070000	0.646766	
mm_74548.1	chr8	10694982	10695182	-	1	NA	NA	NA	187372	NR_040705	320014	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.010000	0.497512	
mm_93656.1	chr10	117689791	117689991	-	1	NA	NA	NA	20867	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.005000	0.328358	
mm_112952.1	chr13	21179326	21179526	+	1	NA	NA	NA	-505	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.040000	0.641791	
mm_140765.1	chr17	17624505	17624705	-	1	NA	NA	NA	-116	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.105000	0.706468	
mm_159284.1	chr2	169633497	169633697	+	1	NA	NA	NA	-49	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.075000	0.631841	
mm_94342.1	chr11	4729803	4730003	+	1	NA	NA	NA	16875	NM_138948	192650	Mm.207056	NM_138948	ENSMUSG00000009075	Cabp7	-	calcium binding protein 7	protein-coding	0.045000	0.606965	
mm_131299.1	chr16	11406547	11406747	+	1	NA	NA	NA	999	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.000000	0.427861	
mm_63133.1	chr7	123009999	123010199	+	1	NA	NA	NA	39535	NM_175023	19647	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6	protein-coding	0.020000	0.472637	-60(CTTTTTCTGGCC,+,0.00)
mm_2298.1	chr1	91494614	91494814	+	1	NA	NA	NA	46	NM_028718	74019	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	0.160000	0.771144	
mm_77316.1	chr8	117748158	117748358	-	1	NA	NA	NA	46312	NM_008290	15486	Mm.276466	NM_008290	ENSMUSG00000031844	Hsd17b2	AI194836|AI194967|AI255511	hydroxysteroid (17-beta) dehydrogenase 2	protein-coding	0.015000	0.507463	-95(GTTTTTAGAGAC,+,0.00)
mm_19461.1	chr2	92392368	92392568	-	1	NA	NA	NA	215	NM_001202446	19099	Mm.2720	NM_011162	ENSMUSG00000027223	Mapk8ip1	IB1|JIP-1|Jip1|Prkm8ip|Skip|mjip-2a	mitogen-activated protein kinase 8 interacting protein 1	protein-coding	0.050000	0.626866	
mm_143257.1	chr17	65580602	65580802	-	1	NA	NA	NA	32853	NM_013933	30960	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.010000	0.393035	
mm_44496.1	chr5	23684522	23684722	-	1	NA	NA	NA	28045	NR_038090	433855	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	0.000000	0.472637	-43(GGTCATAAAAGG,-,0.00)
mm_67473.1	chr7	80500914	80501114	-	1	NA	NA	NA	33984	NM_007550	12144	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ helicase-like	protein-coding	0.010000	0.447761	
mm_20833.1	chr2	147185717	147185917	-	1	NA	NA	NA	585	NM_001077632	18088	Mm.330639	NM_010919	ENSMUSG00000027434	Nkx2-2	Nkx-2.2|Nkx2.2|tinman	NK2 homeobox 2	protein-coding	0.075000	0.671642	-24(CCCCTTAAGAGC,-,0.00),-23(CCCTTAAGAGCC,+,0.00)
mm_51887.1	chr6	90601927	90602127	+	1	NA	NA	NA	-2853	NM_027868	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.020000	0.592040	
mm_13131.1	chr2	91779767	91779967	+	1	NA	NA	NA	49729	NM_001080754	228361	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	0.000000	0.338308	
mm_107095.1	chr12	17557616	17557816	+	1	NA	NA	NA	12843	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.035000	0.477612	
mm_95845.1	chr11	57644504	57644704	+	1	NA	NA	NA	-838	NM_134189	171212	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	0.050000	0.601990	
mm_141428.1	chr17	29464043	29464243	-	1	NA	NA	NA	-26902	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.045000	0.592040	
mm_144904.1	chr18	37341622	37341822	+	1	NA	NA	NA	20	NM_053132	93878	Mm.44755	NM_053132	ENSMUSG00000045062	Pcdhb7	Pcdhb4B|PcdhbG	protocadherin beta 7	protein-coding	0.030000	0.393035	
mm_10440.1	chr2	14247454	14247654	+	1	NA	NA	NA	-13449	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.005000	0.398010	
mm_66972.1	chr7	63891377	63891577	-	1	NA	NA	NA	-25380	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.055000	0.542289	
mm_90729.1	chr10	5194945	5195145	-	1	NA	NA	NA	-338	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.010000	0.353234	
mm_96844.1	chr11	70030036	70030236	+	1	NA	NA	NA	11531	NM_007864	13385	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs, large homolog 4 (Drosophila)	protein-coding	0.015000	0.542289	
mm_93364.1	chr10	103236250	103236450	-	1	NA	NA	NA	-28	NM_029134	74978	Mm.483817	NM_029134	ENSMUSG00000019892	Lrriq1	4930503E15Rik|Gm1557	leucine-rich repeats and IQ motif containing 1	protein-coding	0.030000	0.527363	
mm_22701.1	chr3	18054300	18054500	+	1	NA	NA	NA	75	NM_021560	59058	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0.060000	0.477612	
mm_25818.1	chr3	127798086	127798286	+	1	NA	NA	NA	8273	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.000000	0.388060	
mm_58187.1	chr6	142964718	142964918	-	1	NA	NA	NA	-366	NM_011374	20449	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0.095000	0.582090	
mm_110275.1	chr12	32017552	32017752	-	1	NA	NA	NA	43627	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.030000	0.512438	
mm_103774.1	chr11	82607085	82607285	-	1	NA	NA	NA	-26168	NR_033582	791422	Mm.341562	NR_033582	ENSMUSG00000069796	Gm11426	OTTMUSG00000000913	predicted gene 11426	ncRNA	0.010000	0.532338	
mm_44816.1	chr5	33649218	33649418	-	1	NA	NA	NA	3256	NM_001289725	20492	Mm.4172	NM_009193	ENSMUSG00000004642	Slbp	-	stem-loop binding protein	protein-coding	0.000000	0.412935	
mm_88972.1	chr10	81419761	81419961	+	1	NA	NA	NA	-3564	NR_106141	102465778		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.030000	0.532338	
mm_137248.1	chr17	24488686	24488886	+	1	NA	NA	NA	3	NM_027937	268932	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	0.160000	0.810945	
mm_70902.1	chr8	25602368	25602568	+	1	NA	NA	NA	184	NM_001308482	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.130000	0.761194	
mm_41001.1	chr5	77407477	77407677	+	1	NA	NA	NA	468	NM_001159518	29817	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	0.090000	0.716418	
mm_123892.1	chr14	72847448	72847648	-	1	NA	NA	NA	-137545	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.015000	0.497512	
mm_92198.1	chr10	68136519	68136719	-	1	NA	NA	NA	142107	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.045000	0.606965	
mm_48904.1	chr6	3523838	3524038	+	1	NA	NA	NA	25545	NM_001167750	73288	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	0.005000	0.467662	
mm_75192.1	chr8	38661367	38661567	-	1	NA	NA	NA	41	NM_145841	244431	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding	0.020000	0.492537	
mm_52330.1	chr6	109125417	109125617	+	1	NA	NA	NA	296876	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.025000	0.522388	
mm_88561.1	chr10	79637177	79637377	+	1	NA	NA	NA	641	NM_001024539	216148	Mm.39424	NM_001024539	ENSMUSG00000020312	Shc2	6720466E06|SCK|ShcB|Sli	SHC (Src homology 2 domain containing) transforming protein 2	protein-coding	0.090000	0.701493	
mm_147937.1	chr18	66022491	66022691	-	1	NA	NA	NA	-19956	NM_001172062	70361	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	0.030000	0.502488	
mm_126869.1	chr15	89370435	89370635	+	1	NA	NA	NA	3283	NM_001111288	100126824	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	0.045000	0.572139	
mm_80616.1	chr9	88359125	88359325	+	1	NA	NA	NA	31616	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	0.005000	0.363184	
mm_137241.1	chr17	24470395	24470595	+	1	NA	NA	NA	22	NM_025954	67078	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	0.155000	0.781095	
mm_56114.1	chr6	87511088	87511288	-	1	NA	NA	NA	-14861	NM_175476	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.005000	0.462687	
mm_44378.1	chr5	17820455	17820655	-	1	NA	NA	NA	15341	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.373134	
mm_90892.1	chr10	10296865	10297065	-	1	NA	NA	NA	175349	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.010000	0.487562	
mm_55686.1	chr6	72630455	72630655	-	1	NA	NA	NA	724	NR_040421	100038714	Mm.321330	NR_040421		Gm15401	ENSMUSG00000072999|OTTMUSG00000021199	predicted gene 15401	ncRNA	0.000000	0.512438	
mm_131974.1	chr16	24973097	24973297	+	1	NA	NA	NA	-86442	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.010000	0.388060	-33(ATCTATTTAAGG,-,0.00)
mm_163325.1	chr12	8015552	8015752	+	1	NA	NA	NA	37975	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.313433	
mm_165612.1	chr3	54390188	54390388	+	1	NA	NA	NA	29181	NM_015784	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0.015000	0.432836	
mm_48323.1	chr5	138994859	138995059	-	1	NA	NA	NA	-6	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.100000	0.736318	
mm_44439.1	chr5	21424575	21424775	-	1	NA	NA	NA	2	NM_029195	75172	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	0.020000	0.447761	
mm_49451.1	chr6	29361318	29361518	+	1	NA	NA	NA	13312	NM_184053	12321	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	0.040000	0.497512	
mm_75904.1	chr8	71272404	71272604	-	1	NA	NA	NA	86	NM_001163042	76478	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding	0.075000	0.621891	
mm_4742.1	chr1	181877264	181877464	+	1	NA	NA	NA	-34963	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.015000	0.616915	
mm_9300.1	chr1	171638671	171638871	-	1	NA	NA	NA	3129	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.005000	0.452736	-25(TCCCTTTAAAGA,-,0.00),-24(CCCTTTAAAGAT,+,0.00)
mm_96577.1	chr11	69059732	69059932	+	1	NA	NA	NA	57	NM_028005	71923	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.140000	0.741294	
mm_77988.1	chr9	7873175	7873375	+	1	NA	NA	NA	-105	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.030000	0.472637	-67(CGCCTTAAGAGG,-,0.00),-66(GCCTTAAGAGGC,+,0.00)
mm_101306.1	chr11	22610261	22610461	-	1	NA	NA	NA	98078	NM_153596	103765	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.005000	0.527363	
mm_103745.1	chr11	80142071	80142271	-	1	NA	NA	NA	-18	NM_183275	68550	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0.055000	0.572139	
mm_65370.1	chr7	25072709	25072909	-	1	NA	NA	NA	-440	NM_008168	14809	Mm.2879	NM_008168	ENSMUSG00000003378	Grik5	GluK5|GluRgamma2|KA2	glutamate receptor, ionotropic, kainate 5 (gamma 2)	protein-coding	0.070000	0.711443	
mm_72298.1	chr8	75448673	75448873	+	1	NA	NA	NA	79	NM_001164235	71831	Mm.443238	NM_027944	ENSMUSG00000031620	1700007B14Rik	-	RIKEN cDNA 1700007B14 gene	protein-coding	0.020000	0.582090	
mm_95161.1	chr11	36548279	36548479	+	1	NA	NA	NA	395862	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.015000	0.582090	
mm_156584.1	chrX	152144082	152144282	+	1	NA	NA	NA	-86	NM_001114664	245666	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	0.175000	0.840796	
mm_47583.1	chr5	124578989	124579189	-	1	NA	NA	NA	42	NM_145371	209354	Mm.28839	NM_145371	ENSMUSG00000029388	Eif2b1	D5Ertd406e|EIF2BA	eukaryotic translation initiation factor 2B, subunit 1 (alpha)	protein-coding	0.145000	0.676617	
mm_110199.1	chr12	27340624	27340824	-	1	NA	NA	NA	1994	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.015000	0.368159	-49(CCCTTTAGACGG,+,0.00)
mm_103459.1	chr11	76388834	76389034	-	1	NA	NA	NA	10207	NM_008750	18230	Mm.27915	NM_008750	ENSMUSG00000020844	Nxn	l11Jus13	nucleoredoxin	protein-coding	0.010000	0.442786	
mm_133276.1	chr16	77399858	77400058	+	1	NA	NA	NA	70630	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.025000	0.457711	-31(CACCTTAAAGGG,-,0.00),-29(CCTTAAAGGGCA,+,0.00)
mm_112570.1	chr13	13576509	13576709	+	1	NA	NA	NA	-13800	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.020000	0.507463	
mm_62337.1	chr7	100495897	100496097	+	1	NA	NA	NA	2639	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.020000	0.542289	
mm_78408.1	chr9	29992024	29992224	+	1	NA	NA	NA	-28995	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.010000	0.393035	
mm_9867.1	chr1	184873467	184873667	-	1	NA	NA	NA	9469	NM_178692	226777	Mm.169542	NM_178692	ENSMUSG00000039349	C130074G19Rik	-	RIKEN cDNA C130074G19 gene	protein-coding	0.000000	0.631841	
mm_58017.1	chr6	136661553	136661753	-	1	NA	NA	NA	240	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.070000	0.696517	
mm_35373.1	chr4	33031188	33031388	-	1	NA	NA	NA	35	NR_036602	100504166	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	0.170000	0.776119	
mm_83734.1	chr9	51068011	51068211	-	1	NA	NA	NA	8983	NM_001033534	244864	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0.035000	0.492537	
mm_86065.1	chr9	114774656	114774856	-	1	NA	NA	NA	7237	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.010000	0.407960	
mm_43425.1	chr5	136057193	136057393	+	1	NA	NA	NA	26	NM_027158	69665	Mm.75713	NM_027158	ENSMUSG00000006143	Upk3bl	2310043J07Rik	uroplakin 3B-like	protein-coding	0.010000	0.606965	
mm_60726.1	chr7	45377084	45377284	+	1	NA	NA	NA	-6620	NM_011698	22342	Mm.20472	NM_011698	ENSMUSG00000003872	Lin7b	LIN-7B|MALS-2|Veli2	lin-7 homolog B (C. elegans)	protein-coding	0.110000	0.656716	
mm_110513.1	chr12	54795578	54795778	-	1	NA	NA	NA	-16	NM_026998	72183	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	0.155000	0.776119	
mm_87242.1	chr10	40931829	40932029	+	1	NA	NA	NA	48395	NM_031877	83767	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	0.010000	0.432836	
mm_49727.1	chr6	34685019	34685219	+	1	NA	NA	NA	-24325	NM_145575	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.030000	0.537313	-32(CGCCTTAAATGC,-,0.00),-30(CCTTAAATGCCA,+,0.00)
mm_9041.1	chr1	167266716	167266916	-	1	NA	NA	NA	18311	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.010000	0.427861	
mm_166774.1	chr6	136714131	136714331	-	1	NA	NA	NA	-52338	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.000000	0.487562	
mm_65186.1	chr7	19696402	19696602	-	1	NA	NA	NA	1896	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.035000	0.587065	
mm_124874.1	chr15	10223700	10223900	+	1	NA	NA	NA	-106	NM_001253781	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.000000	0.427861	
mm_157724.1	chrX	70345169	70345369	-	1	NA	NA	NA	19816	NM_010498	15931	Mm.233083	NM_010498	ENSMUSG00000035847	Ids	AW214631	iduronate 2-sulfatase	protein-coding	0.005000	0.338308	
mm_64092.1	chr7	140968147	140968347	+	1	NA	NA	NA	171	NM_001112715	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding	0.025000	0.542289	
mm_111956.1	chr12	109560440	109560640	-	1	NA	NA	NA	-3152	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.025000	0.472637	
mm_48419.1	chr5	140382638	140382838	-	1	NA	NA	NA	6570	NM_172277	231834	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.010000	0.497512	
mm_77459.1	chr8	121944797	121944997	-	1	NA	NA	NA	15	NM_007608	12352	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	0.005000	0.547264	
mm_137435.1	chr17	26503289	26503489	+	1	NA	NA	NA	5083	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.045000	0.631841	
mm_14562.1	chr2	134862864	134863064	+	1	NA	NA	NA	76800	NM_001145830	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding	0.005000	0.472637	
mm_51729.1	chr6	87009783	87009983	+	1	NA	NA	NA	47	NM_020045	56748	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	0.085000	0.671642	
mm_143933.1	chr17	86161892	86162092	-	1	NA	NA	NA	-5793	NM_011104	18754	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0.030000	0.552239	
mm_95351.1	chr11	48803336	48803536	+	1	NA	NA	NA	297	NR_028564	100216540		NR_028564	ENSMUSG00000064780	Snord95	-	small nucleolar RNA, C/D box 95	snoRNA	0.020000	0.507463	
mm_76079.1	chr8	79294620	79294820	-	1	NA	NA	NA	236	NM_133823	109136	Mm.26510	NM_133823	ENSMUSG00000037022	Mmaa	2810018E08Rik|AI840684	methylmalonic aciduria (cobalamin deficiency) type A	protein-coding	0.080000	0.661692	
mm_59420.1	chr7	27121855	27122055	+	1	NA	NA	NA	2000	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.030000	0.562189	
mm_56091.1	chr6	87348958	87349158	-	1	NA	NA	NA	1857	NM_025466	66283	Mm.46414	NM_025466	ENSMUSG00000030050	Gkn1	2200002K21Rik|AMP-18|BRICD1|Fov	gastrokine 1	protein-coding	0.035000	0.467662	
mm_44567.1	chr5	24704564	24704764	-	1	NA	NA	NA	18849	NM_001305264	53312	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0.020000	0.542289	
mm_156421.1	chrX	140923070	140923270	+	1	NA	NA	NA	-19	NM_026103	78789	Mm.244932	NM_026103	ENSMUSG00000031430	Vsig1	1700062D20Rik|4930405J24Rik	V-set and immunoglobulin domain containing 1	protein-coding	0.000000	0.482587	
mm_72779.1	chr8	86745408	86745608	+	1	NA	NA	NA	-191	NR_027829	666945	Mm.391806	NR_027829		Gm10638	ENSMUSG00000074178	predicted gene 10638	ncRNA	0.135000	0.721393	
mm_163796.1	chr14	16457074	16457274	+	1	NA	NA	NA	91968	NM_009409	21974	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.005000	0.472637	
mm_61487.1	chr7	75701923	75702123	+	1	NA	NA	NA	-146315	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.025000	0.522388	
mm_101739.1	chr11	43378976	43379176	-	1	NA	NA	NA	-4615	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.000000	0.328358	
mm_76399.1	chr8	84844621	84844821	-	1	NA	NA	NA	2210	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.010000	0.522388	
mm_128437.1	chr15	50703604	50703804	-	1	NA	NA	NA	185345	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.368159	
mm_16345.1	chr2	174345917	174346117	+	1	NA	NA	NA	15928	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.040000	0.472637	
mm_87728.1	chr10	60115674	60115874	+	1	NA	NA	NA	9517	NM_052994	94214	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.030000	0.587065	
mm_146503.1	chr18	3299452	3299652	-	1	NA	NA	NA	4	NM_001110853	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.005000	0.457711	-83(GTCCTGAAAAGG,-,0.00)
mm_24325.1	chr3	89436786	89436986	+	1	NA	NA	NA	182	NM_146131	229534	Mm.65906	NM_146131	ENSMUSG00000042613	Pbxip1	4732463H20Rik	pre B cell leukemia transcription factor interacting protein 1	protein-coding	0.035000	0.557214	-33(CTGTATAAAAGG,-,0.00)
mm_40641.1	chr5	64917601	64917801	+	1	NA	NA	NA	14998	NM_030682	21897	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.020000	0.412935	
mm_171623.1	chr4	154682627	154682827	+	1	NA	NA	NA	-14860	NM_028513	73353	Mm.30958	NM_028513	ENSMUSG00000051276	Actrt2	1700052K15Rik|Arp-T2|Arpm2	actin-related protein T2	protein-coding	0.020000	0.402985	-33(TGGTATAAAAGC,-,0.00)
mm_109679.1	chr12	113133096	113133296	+	1	NA	NA	NA	-7040	NM_024223	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.035000	0.567164	
mm_59344.1	chr7	25619325	25619525	+	1	NA	NA	NA	11	NM_001290487	66349	Mm.159956	NM_025504	ENSMUSG00000057229	Atp5sl	2310004L02Rik|C030044E10Rik	ATP5S-like	protein-coding	0.090000	0.597015	-99(CGCCTTTAAAAG,-,0.00),-98(GCCTTTAAAAGG,-,0.00),-97(CCTTTAAAAGGC,+,0.00),-96(CTTTAAAAGGCG,+,0.00)
mm_47117.1	chr5	119670741	119670941	-	1	NA	NA	NA	-21	NM_198052	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.095000	0.592040	
mm_86197.1	chr9	119975967	119976167	-	1	NA	NA	NA	8591	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.015000	0.437811	
mm_96565.1	chr11	69026729	69026929	+	1	NA	NA	NA	10918	NM_001013256	68964	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	0.000000	0.437811	
mm_19467.1	chr2	92434353	92434553	-	1	NA	NA	NA	-384	NM_009963	12953	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	0.040000	0.462687	
mm_43557.1	chr5	137615516	137615716	+	1	NA	NA	NA	-4212	NM_008788	18542	Mm.262345	NM_008788	ENSMUSG00000029718	Pcolce	Astt-2|Astt2|P14|PCPE-1	procollagen C-endopeptidase enhancer protein	protein-coding	0.020000	0.467662	
mm_86681.1	chr10	18356221	18356421	+	1	NA	NA	NA	-51354	NM_173390	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.015000	0.358209	
mm_82827.1	chr9	31131727	31131927	-	1	NA	NA	NA	-28	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.090000	0.736318	
mm_38056.1	chr4	134004435	134004635	-	1	NA	NA	NA	-3671	NM_026144	67422	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	0.020000	0.482587	
mm_127626.1	chr15	102462275	102462475	+	1	NA	NA	NA	3205	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.025000	0.552239	
mm_155878.1	chrX	101448984	101449184	+	1	NA	NA	NA	-25	NM_013712	26549	Mm.46232	NM_013712	ENSMUSG00000031312	Itgb1bp2	Chordc3	integrin beta 1 binding protein 2	protein-coding	0.005000	0.512438	
mm_114656.1	chr13	78024803	78025003	+	1	NA	NA	NA	1	NM_029315	75507	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding	0.040000	0.611940	
mm_144113.1	chr18	4353520	4353720	+	1	NA	NA	NA	73	NR_040328	73915	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0.035000	0.567164	
mm_414.1	chr1	34236494	34236694	+	1	NA	NA	NA	76264	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.105000	0.731343	
mm_160314.1	chr7	141981424	141981624	+	1	NA	NA	NA	-10655	NR_037291	100526509		NR_037291	ENSMUSG00000092652	Mir3104	mir-3104|mmu-mir-3104	microRNA 3104	ncRNA	0.020000	0.537313	
mm_15287.1	chr2	155276803	155277003	+	1	NA	NA	NA	539	NR_046364	66734	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0.120000	0.776119	
mm_16037.1	chr2	167688865	167689065	+	1	NA	NA	NA	50	NM_001287738	12608	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.170000	0.796020	-34(CGCCTTATAAAC,-,0.00),-32(CCTTATAAACCT,+,0.00)
mm_24137.1	chr3	88276972	88277172	+	1	NA	NA	NA	19766	NM_029801	76927	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	0.005000	0.388060	
mm_37309.1	chr4	119294409	119294609	-	1	NA	NA	NA	4	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.110000	0.681592	
mm_113815.1	chr13	46669477	46669677	+	1	NA	NA	NA	55	NM_001033192	97863	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	0.120000	0.766169	
mm_139040.1	chr17	46227694	46227894	+	1	NA	NA	NA	-3737	NR_030466	751553		NR_030466	ENSMUSG00000076141	Mir693	Mirn693|mir-693|mmu-mir-693	microRNA 693	ncRNA	0.025000	0.497512	
mm_154801.1	chrX	13289339	13289539	+	1	NA	NA	NA	8417	NM_010028	13205	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	0.015000	0.383085	
mm_76237.1	chr8	83574702	83574902	-	1	NA	NA	NA	8044	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.040000	0.616915	
mm_64738.1	chr7	4725263	4725463	-	1	NA	NA	NA	-112	NM_177887	330460	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	0.020000	0.477612	
mm_161914.1	chr18	67435606	67435806	-	1	NA	NA	NA	13430	NM_027130	69597	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	0.025000	0.452736	
mm_167079.1	chr7	100706751	100706951	+	1	NA	NA	NA	149	NM_178764	319604	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0.115000	0.716418	
mm_67958.1	chr7	100514694	100514894	-	1	NA	NA	NA	21	NM_153527	69387	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	0.020000	0.522388	
mm_33137.1	chr4	125066594	125066794	+	1	NA	NA	NA	1	NM_175246	76793	Mm.22548	NM_175246	ENSMUSG00000050213	Snip1	2410133M08Rik	Smad nuclear interacting protein 1	protein-coding	0.105000	0.671642	
mm_94260.1	chr11	3488181	3488381	+	1	NA	NA	NA	54	NM_172791	237625	Mm.100476	NM_172791	ENSMUSG00000034579	Pla2g3	-	phospholipase A2, group III	protein-coding	0.015000	0.611940	
mm_22484.1	chr3	5400556	5400756	+	1	NA	NA	NA	175592	NM_001163301	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.010000	0.467662	
mm_155334.1	chrX	66649342	66649542	+	1	NA	NA	NA	124	NM_001161431	245450	Mm.336081	NM_198863	ENSMUSG00000036790	Slitrk2	A930040J07	SLIT and NTRK-like family, member 2	protein-coding	0.075000	0.651741	
mm_166849.1	chr7	19696647	19696847	+	1	NA	NA	NA	1651	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.105000	0.696517	
mm_53476.1	chr6	134929041	134929241	+	1	NA	NA	NA	49	NR_037955	381822	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	0.055000	0.597015	
mm_141497.1	chr17	31557975	31558175	-	1	NA	NA	NA	-6698	NR_027493	18771	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.005000	0.562189	-83(CCTTTAATAGGT,+,0.00),34(CTTTTAATATGC,+,0.00)
mm_52725.1	chr6	120093254	120093454	+	1	NA	NA	NA	-26	NM_016718	29862	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.030000	0.582090	
mm_7433.1	chr1	119912982	119913182	-	1	NA	NA	NA	86	NM_175106	66343	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	0.055000	0.562189	
mm_103971.1	chr11	84519180	84519380	-	1	NA	NA	NA	-5779	NM_019816	56321	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0.035000	0.552239	
mm_136659.1	chr17	6006395	6006595	+	1	NA	NA	NA	-1085	NM_001290698	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.015000	0.497512	
mm_23671.1	chr3	68572370	68572570	+	1	NA	NA	NA	102	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.070000	0.646766	
mm_24906.1	chr3	96219737	96219937	+	1	NA	NA	NA	-79	NM_178213	621893		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	0.020000	0.457711	
mm_167237.1	chr8	19113103	19113303	+	1	NA	NA	NA	1630	NM_152802	77674	Mm.281961	NM_152802	ENSMUSG00000043787	Defb12	9230103N16Rik|BD-12	defensin beta 12	protein-coding	0.000000	0.422886	
mm_61192.1	chr7	63897311	63897511	+	1	NA	NA	NA	-19446	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.015000	0.562189	40(GTTTTTAGAGGA,+,0.00)
mm_139912.1	chr17	70928907	70929107	+	1	NA	NA	NA	61509	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.035000	0.447761	
mm_105322.1	chr11	102893040	102893240	-	1	NA	NA	NA	4060	NM_001131020	14580	Mm.1239	NM_010277	ENSMUSG00000020932	Gfap	AI836096	glial fibrillary acidic protein	protein-coding	0.065000	0.601990	
mm_13625.1	chr2	113478807	113479007	+	1	NA	NA	NA	37843	NM_001285459	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.010000	0.457711	
mm_5708.1	chr1	43542330	43542530	-	1	NA	NA	NA	96679	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.010000	0.477612	
mm_159383.1	chr3	90267275	90267475	+	1	NA	NA	NA	861	NM_201407	229541	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0.020000	0.497512	
mm_33285.1	chr4	128805671	128805871	+	1	NA	NA	NA	341	NM_001081098	230761	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.120000	0.631841	
mm_164709.1	chr17	53022681	53022881	-	1	NA	NA	NA	420072	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.000000	0.452736	
mm_10734.1	chr2	23039207	23039407	+	1	NA	NA	NA	934	NM_001077192	11308	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.030000	0.582090	
mm_7941.1	chr1	133914694	133914894	-	1	NA	NA	NA	6607	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.035000	0.582090	
mm_64800.1	chr7	6690777	6690977	-	1	NA	NA	NA	5555	NM_011769	22776	Mm.89976	NM_011769	ENSMUSG00000002266	Zim1	-	zinc finger, imprinted 1	protein-coding	0.000000	0.437811	
mm_86212.1	chr9	120012664	120012864	-	1	NA	NA	NA	10834	NM_011724	22437	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.015000	0.522388	
mm_139698.1	chr17	57447763	57447963	+	1	NA	NA	NA	89177	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.482587	
mm_12349.1	chr2	69748968	69749168	+	1	NA	NA	NA	25980	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.015000	0.422886	
mm_161822.1	chr17	71781734	71781934	+	1	NA	NA	NA	-113	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	0.010000	0.467662	
mm_120277.1	chr14	63129275	63129475	+	1	NA	NA	NA	6913	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.472637	
mm_15552.1	chr2	158436906	158437106	+	1	NA	NA	NA	27153	NM_001291138	228850	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0.020000	0.412935	
mm_22851.1	chr3	28263271	28263471	+	1	NA	NA	NA	157	NM_001163009	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.095000	0.616915	-26(CCATTTAAATAC,+,0.00)
mm_82074.1	chr9	122923007	122923207	+	1	NA	NA	NA	29	NM_009544	22646	Mm.290595	NM_009544	ENSMUSG00000057895	Zfp105	AW557864	zinc finger protein 105	protein-coding	0.115000	0.696517	
mm_155255.1	chrX	57223986	57224186	+	1	NA	NA	NA	11943	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.015000	0.547264	
mm_106411.1	chr11	119053335	119053535	-	1	NA	NA	NA	-12522	NM_013926	30951	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.125000	0.656716	-36(GTCCTTATATGG,-,0.00),-34(CCTTATATGGTG,+,0.00),6(CGCCATATAAGG,-,0.00),8(CCATATAAGGAC,+,0.00)
mm_32295.1	chr4	103119184	103119384	+	1	NA	NA	NA	-106	NM_001039081	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.190000	0.845771	
mm_107644.1	chr12	52504006	52504206	+	1	NA	NA	NA	-11971	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0.150000	0.746269	
mm_115898.1	chr13	23313258	23313458	-	1	NA	NA	NA	49	NR_126443	75322	Mm.108666	NR_126443	ENSMUSG00000085488	4930557F10Rik	-	RIKEN cDNA 4930557F10 gene	ncRNA	0.065000	0.542289	
mm_90968.1	chr10	13428621	13428821	-	1	NA	NA	NA	-39751	NM_001195066	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.015000	0.462687	
mm_59159.1	chr7	24377246	24377446	+	1	NA	NA	NA	7083	NM_008433	16534	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0.085000	0.716418	
mm_7646.1	chr1	128299415	128299615	-	1	NA	NA	NA	28803	NM_001081078	226413	Mm.26930	NM_001081078	ENSMUSG00000026354	Lct	Gm100|LAC|LPH|Lphl	lactase	protein-coding	0.000000	0.427861	
mm_112875.1	chr13	20853807	20854007	+	1	NA	NA	NA	59794	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.363184	
mm_99367.1	chr11	101732926	101733126	+	1	NA	NA	NA	70	NM_144831	217207	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	0.095000	0.606965	
mm_75836.1	chr8	70527839	70528039	-	1	NA	NA	NA	93	NM_001199631	14232	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|Fkbp38	FK506 binding protein 8	protein-coding	0.135000	0.786070	
mm_97351.1	chr11	77493184	77493384	+	1	NA	NA	NA	-128	NM_001004144	216963	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0.150000	0.815920	
mm_120706.1	chr14	71237291	71237491	+	1	NA	NA	NA	-13882	NR_046075	100043132	Mm.399336	NR_046075		Gm4251	-	predicted gene 4251	ncRNA	0.000000	0.442786	
mm_83236.1	chr9	42399392	42399592	-	1	NA	NA	NA	437	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.020000	0.522388	
mm_68354.1	chr7	106510309	106510509	-	1	NA	NA	NA	-69336	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.005000	0.412935	
mm_26597.1	chr3	151507937	151508137	+	1	NA	NA	NA	70155	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.010000	0.417910	-84(CCTTTAAGAGTT,+,0.00)
mm_2989.1	chr1	133132557	133132757	+	1	NA	NA	NA	1491	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.030000	0.527363	
mm_40285.1	chr5	43233581	43233781	+	1	NA	NA	NA	218	NM_001177379	231207	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.130000	0.746269	
mm_141679.1	chr17	33929191	33929391	-	1	NA	NA	NA	-603	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.090000	0.611940	
mm_91158.1	chr10	20548270	20548470	-	1	NA	NA	NA	-42	NM_001347366	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.035000	0.562189	
mm_98308.1	chr11	90033491	90033691	+	1	NA	NA	NA	3243	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.015000	0.537313	
mm_117406.1	chr13	73937632	73937832	-	1	NA	NA	NA	35	NM_027182	69716	Mm.275095	NM_027182	ENSMUSG00000021569	Trip13	2410002G23Rik|D13Ertd328e	thyroid hormone receptor interactor 13	protein-coding	0.115000	0.696517	
mm_863.1	chr1	52148810	52149010	+	1	NA	NA	NA	29288	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.020000	0.562189	
mm_53782.1	chr6	146577442	146577642	+	1	NA	NA	NA	293	NM_138757	71177	Mm.271774	NM_138757	ENSMUSG00000040250	Asun	4933424B01Rik|Spata30	asunder, spermatogenesis regulator	protein-coding	0.105000	0.597015	
mm_109513.1	chr12	111454161	111454361	+	1	NA	NA	NA	11600	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.015000	0.517413	
mm_39410.1	chr5	14668933	14669133	+	1	NA	NA	NA	154115	NM_001110796	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.020000	0.497512	
mm_28400.1	chr3	90238698	90238898	-	1	NA	NA	NA	3752	NM_001307935	78284	Mm.299952	NM_030080	ENSMUSG00000027938	Creb3l4	1700012K17Rik|5330432F22Rik|AIBZIP|AV040530|AV258827|CREB4|JAL|TISP40|acre1	cAMP responsive element binding protein 3-like 4	protein-coding	0.010000	0.547264	
mm_141888.1	chr17	34861058	34861258	-	1	NA	NA	NA	1356	NM_001142706	14962	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0.045000	0.522388	
mm_89489.1	chr10	93700597	93700797	+	1	NA	NA	NA	-17375	NR_038017	100504069	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	OTTMUSG00000027787	predicted gene 15915	ncRNA	0.025000	0.427861	
mm_136122.1	chr16	85900202	85900402	-	1	NA	NA	NA	823	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0.065000	0.656716	
mm_34730.1	chr4	152178148	152178348	+	1	NA	NA	NA	148	NM_133348	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.100000	0.691542	
mm_53754.1	chr6	145387497	145387697	+	1	NA	NA	NA	-28	NR_003625	381827	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	0.010000	0.427861	
mm_97872.1	chr11	83176160	83176360	+	1	NA	NA	NA	1074	NM_001302559	20558	Mm.38192	NM_011410	ENSMUSG00000000204	Slfn4	AI450778	schlafen 4	protein-coding	0.000000	0.442786	
mm_128664.1	chr15	60149617	60149817	-	1	NA	NA	NA	-133099	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.000000	0.412935	
mm_107149.1	chr12	23903030	23903230	+	1	NA	NA	NA	194139	NM_001256489	66808	Mm.379124	NM_001256489	ENSMUSG00000073158	9030624G23Rik	-	RIKEN cDNA 9030624G23 gene	protein-coding	0.055000	0.567164	
mm_60908.1	chr7	46753326	46753526	+	1	NA	NA	NA	1593	NM_011314	20209	Mm.200941	NM_011314	ENSMUSG00000057465	Saa2	AW111173|Saa-2|Saa1	serum amyloid A 2	protein-coding	0.010000	0.537313	
mm_34485.1	chr4	148536251	148536451	+	1	NA	NA	NA	-22076	NM_016699	50912	Mm.266635	NM_016699	ENSMUSG00000017264	Exosc10	PM-Scl|PM/Scl-100|Pmscl2|RRP6|p2|p3|p4	exosome component 10	protein-coding	0.020000	0.517413	
mm_152856.1	chr19	24174051	24174251	-	1	NA	NA	NA	-11	NM_001198985	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.135000	0.776119	
mm_131811.1	chr16	22918384	22918584	+	1	NA	NA	NA	102	NM_001083905	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.020000	0.527363	
mm_123994.1	chr14	75775396	75775596	-	1	NA	NA	NA	11541	NM_026232	67554	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0.010000	0.393035	
mm_85790.1	chr9	109095720	109095920	-	1	NA	NA	NA	384	NM_172775	235611	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.115000	0.706468	
mm_83945.1	chr9	56851935	56852135	-	1	NA	NA	NA	-72	NM_198673	382075	Mm.335177	NM_198673	ENSMUSG00000045620	Odf3l1	BC049697|Gm1116	outer dense fiber of sperm tails 3-like 1	protein-coding	0.030000	0.567164	
mm_2004.1	chr1	87126998	87127198	+	1	NA	NA	NA	2090	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.045000	0.522388	
mm_92978.1	chr10	86693317	86693517	-	1	NA	NA	NA	7890	NR_015572	66263	Mm.392261	NR_015572		1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	0.020000	0.497512	
mm_97434.1	chr11	78165547	78165747	+	1	NA	NA	NA	-97	NM_009423	22032	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0.095000	0.666667	
mm_89422.1	chr10	90915636	90915836	+	1	NA	NA	NA	85893	NM_001347053	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.025000	0.522388	
mm_64969.1	chr7	16615171	16615371	-	1	NA	NA	NA	-278	NM_172739	232906	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.105000	0.701493	
mm_12391.1	chr2	69897175	69897375	+	1	NA	NA	NA	29	NM_177783	68795	Mm.314576	NM_177783	ENSMUSG00000044308	Ubr3	1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding	0.120000	0.731343	
mm_146583.1	chr18	7626745	7626945	-	1	NA	NA	NA	18	NM_001081287	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0.070000	0.636816	
mm_129711.1	chr15	81858223	81858423	-	1	NA	NA	NA	3	NM_020507	57259	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.070000	0.616915	
mm_143086.1	chr17	57078372	57078572	-	1	NA	NA	NA	38	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.015000	0.621891	
mm_172047.1	chr6	128513230	128513430	-	1	NA	NA	NA	13390	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.015000	0.487562	
mm_8945.1	chr1	164438260	164438460	-	1	NA	NA	NA	19995	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.045000	0.497512	
mm_104780.1	chr11	98546101	98546301	-	1	NA	NA	NA	-170	NM_011771	22780	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.045000	0.522388	
mm_92138.1	chr10	66911376	66911576	-	1	NA	NA	NA	8908	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.005000	0.517413	
mm_147066.1	chr18	35130833	35131033	-	1	NA	NA	NA	12021	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.000000	0.383085	-38(GACTCTAAAGAG,-,0.00)
mm_150426.1	chr19	37436612	37436812	+	1	NA	NA	NA	1871	NM_008245	15242	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0.060000	0.601990	
mm_33085.1	chr4	124474339	124474539	+	1	NA	NA	NA	11520	NR_040774	78460	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA	0.030000	0.552239	
mm_101578.1	chr11	34365780	34365980	-	1	NA	NA	NA	51058	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.005000	0.482587	
mm_162057.1	chrX	8413205	8413405	+	1	NA	NA	NA	0	NM_026492	67985	Mm.298030	NM_026492	ENSMUSG00000079705	Ssxb1	4930414C09Rik	synovial sarcoma, X member B1	protein-coding	0.000000	0.467662	
mm_160277.1	chr7	120145232	120145432	-	1	NA	NA	NA	-41	NM_011775	22787	Mm.6510	NM_011775	ENSMUSG00000030911	Zp2	Zp-2	zona pellucida glycoprotein 2	protein-coding	0.035000	0.592040	
mm_120493.1	chr14	65980782	65980982	+	1	NA	NA	NA	12399	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.010000	0.517413	
mm_164920.1	chr18	77065465	77065665	-	1	NA	NA	NA	-115	NM_001164170	17344	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0.175000	0.820896	
mm_151856.1	chr19	5796782	5796982	-	1	NA	NA	NA	-901	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.010000	0.477612	
mm_65426.1	chr7	25297599	25297799	-	1	NA	NA	NA	256	NM_008776	18476	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	0.095000	0.701493	
mm_88299.1	chr10	75316836	75317036	+	1	NA	NA	NA	59	NM_009630	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.080000	0.701493	
mm_162552.1	chr1	171229655	171229855	-	1	NA	NA	NA	4594	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.015000	0.467662	
mm_65857.1	chr7	29339096	29339296	-	1	NA	NA	NA	35191	NM_013874	29861	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.015000	0.522388	
mm_59242.1	chr7	24780790	24780990	+	1	NA	NA	NA	3686	NM_007675	26366	Mm.30300	NM_007675	ENSMUSG00000054169	Ceacam10	Bgp3|Cea10	carcinoembryonic antigen-related cell adhesion molecule 10	protein-coding	0.035000	0.522388	
mm_62598.1	chr7	105736477	105736677	+	1	NA	NA	NA	7	NM_025897	101867	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.135000	0.736318	
mm_133481.1	chr16	90143889	90144089	+	1	NA	NA	NA	1752	NR_033476	100038709	Mm.484070	NR_033476		Gm10789	ENSMUSG00000074924	predicted gene 10789	ncRNA	0.105000	0.696517	
mm_154715.1	chrX	9115906	9116106	+	1	NA	NA	NA	11444	NM_001270700	75775	Mm.50374	NM_001270700	ENSMUSG00000045797	4930402K13Rik	-	RIKEN cDNA 4930402K13 gene	protein-coding	0.000000	0.278607	
mm_166968.1	chr7	44516867	44517067	+	1	NA	NA	NA	7702	NM_146189	233199	Mm.358888	NM_146189	ENSMUSG00000038670	Mybpc2	-	myosin binding protein C, fast-type	protein-coding	0.030000	0.517413	
mm_172534.1	chr7	93418824	93419024	-	1	NA	NA	NA	339045	NM_021427	58238	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.015000	0.412935	
mm_5254.1	chr1	16645715	16645915	-	1	NA	NA	NA	11050	NM_026456	67923	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	0.000000	0.402985	
mm_166851.1	chr7	19696741	19696941	-	1	NA	NA	NA	1557	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.100000	0.666667	
mm_70330.1	chr8	4492934	4493134	+	1	NA	NA	NA	-371	NM_026058	67260	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0.035000	0.641791	-39(GGCCTGATAAGG,-,0.00)
mm_29938.1	chr3	132683740	132683940	-	1	NA	NA	NA	39	NM_007926	13722	Mm.235137	NM_007926	ENSMUSG00000028029	Aimp1	9830137A06Rik|AIMP1/p43|EMAPII|Emap2|Scye1|p43	aminoacyl tRNA synthetase complex-interacting multifunctional protein 1	protein-coding	0.055000	0.597015	
mm_15922.1	chr2	165066664	165066864	+	1	NA	NA	NA	11128	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.010000	0.517413	
mm_49456.1	chr6	29397451	29397651	+	1	NA	NA	NA	967	NM_001347073	232664	Mm.251303	NM_145574	ENSMUSG00000029769	Ccdc136	4921511K06Rik|BC006583	coiled-coil domain containing 136	protein-coding	0.035000	0.537313	
mm_78104.1	chr9	19629402	19629602	+	1	NA	NA	NA	7411	NM_172918	244713	Mm.67366	NM_172918	ENSMUSG00000057551	Zfp317	4932416G03|D230022C05Rik|KRAB9|Zfp67|Zfp75|mszf40	zinc finger protein 317	protein-coding	0.000000	0.333333	
mm_165248.1	chr2	70135263	70135463	+	1	NA	NA	NA	96237	NM_177376	329421	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0.010000	0.507463	
mm_28866.1	chr3	97610089	97610289	-	1	NA	NA	NA	1	NM_026539	68058	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	0.155000	0.731343	
mm_36651.1	chr4	94603044	94603244	-	1	NA	NA	NA	103	NM_172695	18786	Mm.490101	NM_172695	ENSMUSG00000028577	Plaa	2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3	phospholipase A2, activating protein	protein-coding	0.125000	0.736318	
mm_107686.1	chr12	55080444	55080644	+	1	NA	NA	NA	48	NM_011899	24067	Mm.471968	NM_011899	ENSMUSG00000073079	Srp54a	54kDa|Srp54	signal recognition particle 54A	protein-coding	0.070000	0.616915	
mm_52001.1	chr6	92827549	92827749	+	1	NA	NA	NA	73792	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	0.015000	0.447761	
mm_84947.1	chr9	83112507	83112707	-	1	NA	NA	NA	34000	NM_175074	94353	Mm.244426	NM_026122	ENSMUSG00000066456	Hmgn3	1110002A15Rik|6330514M13Rik|BB071015|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding	0.015000	0.502488	
mm_77068.1	chr8	109962070	109962270	-	1	NA	NA	NA	35	NM_212447	73608	Mm.86833	NM_028584	ENSMUSG00000001672	Marveld3	1810006A16Rik|AI642133|Marvd3|Mrvldc3	MARVEL (membrane-associating) domain containing 3	protein-coding	0.095000	0.671642	
mm_130087.1	chr15	89379070	89379270	-	1	NA	NA	NA	84	NM_001013022	70113	Mm.247273	NM_001013022	ENSMUSG00000047394	Odf3b	2010001J22Rik	outer dense fiber of sperm tails 3B	protein-coding	0.065000	0.641791	
mm_169896.1	chr16	48310373	48310573	+	1	NA	NA	NA	199	NM_028615	73703	Mm.27857	NM_028615	ENSMUSG00000072419	Dppa2	2410088E07Rik|C80932|D19Mgi18|ECAT15-2	developmental pluripotency associated 2	protein-coding	0.020000	0.457711	
mm_98175.1	chr11	87756533	87756733	+	1	NA	NA	NA	-231	NR_029555	387160		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.025000	0.611940	
mm_141855.1	chr17	34802968	34803168	-	1	NA	NA	NA	1358	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.015000	0.611940	
mm_144459.1	chr18	23415388	23415588	+	1	NA	NA	NA	79	NM_001285811	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.020000	0.412935	-32(GGGTTTTTAAAC,-,0.00),-30(GTTTTTAAACTC,+,0.00)
mm_59235.1	chr7	24778048	24778248	+	1	NA	NA	NA	944	NM_007675	26366	Mm.30300	NM_007675	ENSMUSG00000054169	Ceacam10	Bgp3|Cea10	carcinoembryonic antigen-related cell adhesion molecule 10	protein-coding	0.030000	0.507463	
mm_9588.1	chr1	174031741	174031941	-	1	NA	NA	NA	-86	NM_172648	226695	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	0.005000	0.492537	
mm_113416.1	chr13	34021552	34021752	+	1	NA	NA	NA	-15989	NM_026512	68021	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0.000000	0.308458	
mm_37367.1	chr4	120825573	120825773	-	1	NA	NA	NA	68	NM_001277095	18046	Mm.435590	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0.145000	0.731343	
mm_155603.1	chrX	82948985	82949185	+	1	NA	NA	NA	215	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.005000	0.358209	
mm_155224.1	chrX	57065939	57066139	+	1	NA	NA	NA	12205	NM_029371	72459	Mm.2152	NM_028242	ENSMUSG00000067873	Htatsf1	1600023H17Rik|2600017A12Rik|2700077B20Rik|TAT-SF1	HIV TAT specific factor 1	protein-coding	0.010000	0.512438	
mm_58710.1	chr7	12978122	12978322	+	1	NA	NA	NA	374	NM_001168561	269870	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	0.080000	0.661692	
mm_111234.1	chr12	84766671	84766871	-	1	NA	NA	NA	6341	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.005000	0.437811	
mm_119898.1	chr14	54938512	54938712	+	1	NA	NA	NA	2115	NM_029390	67272	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	0.025000	0.577114	
mm_35423.1	chr4	35206752	35206952	-	1	NA	NA	NA	19028	NM_001081343	73205	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585	RIKEN cDNA 3110043O21 gene	protein-coding	0.000000	0.253731	
mm_46683.1	chr5	109690700	109690900	-	1	NA	NA	NA	-131807	NM_001310694	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.040000	0.542289	
mm_83222.1	chr9	42259666	42259866	-	1	NA	NA	NA	4534	NM_172769	235293	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	0.020000	0.398010	75(GTTTTTAAAGGT,+,0.00)
mm_127608.1	chr15	102459075	102459275	+	1	NA	NA	NA	5	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.035000	0.507463	
mm_120345.1	chr14	63783563	63783763	+	1	NA	NA	NA	56474	NR_030611	100124452		NR_030611	ENSMUSG00000076049	Mir598	Mirn598|mir-598|mmu-mir-598	microRNA 598	ncRNA	0.040000	0.542289	
mm_140800.1	chr17	21909548	21909748	-	1	NA	NA	NA	278	NM_001256493	70081	Mm.245648	NM_001256493	ENSMUSG00000078546	Zfp995	2210404O09Rik	zinc finger protein 995	protein-coding	0.070000	0.616915	
mm_90558.1	chr10	128194356	128194556	+	1	NA	NA	NA	-179	NM_001285777	216456	Mm.30102	NM_001033264	ENSMUSG00000044005	Gls2	A330074B06Rik|AI195532|GA|GLS|Lga	glutaminase 2 (liver, mitochondrial)	protein-coding	0.065000	0.666667	
mm_85937.1	chr9	112097978	112098178	-	1	NA	NA	NA	20633	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.010000	0.388060	
mm_171249.1	chr3	7897600	7897800	+	1	NA	NA	NA	57187	NR_040587	75476	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	0.000000	0.343284	
mm_44215.1	chr5	4757781	4757981	-	1	NA	NA	NA	335	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.115000	0.746269	
mm_147003.1	chr18	34373278	34373478	-	1	NA	NA	NA	37	NM_007874	13476	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0.160000	0.766169	
mm_152818.1	chr19	23134926	23135126	-	1	NA	NA	NA	-6200	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.075000	0.611940	
mm_6218.1	chr1	66863175	66863375	-	1	NA	NA	NA	34	NM_007381	11363	Mm.2445	NM_007381	ENSMUSG00000026003	Acadl	AA960361|AU018452|C79855|LCAD	acyl-Coenzyme A dehydrogenase, long-chain	protein-coding	0.160000	0.820896	
mm_108790.1	chr12	90972750	90972950	+	1	NA	NA	NA	-72998	NR_045858	71349	Mm.442093	NR_045858		5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	0.010000	0.427861	
mm_8965.1	chr1	165184635	165184835	-	1	NA	NA	NA	9698	NM_145512	108735	Mm.288369	NM_145512	ENSMUSG00000040848	Sft2d2	2010005O13Rik|AI506168|AW561909|cI-45	SFT2 domain containing 2	protein-coding	0.005000	0.333333	
mm_102613.1	chr11	62457760	62457960	-	1	NA	NA	NA	-528	NM_177229	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.065000	0.522388	
mm_128990.1	chr15	74834649	74834849	-	1	NA	NA	NA	6894	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.000000	0.402985	-43(GGGTTTTAAAGC,-,0.00)
mm_17710.1	chr2	32385652	32385852	-	1	NA	NA	NA	1987	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.025000	0.477612	
mm_166282.1	chr5	96573702	96573902	+	1	NA	NA	NA	199847	NM_175473	231470	Mm.291120	NM_175473	ENSMUSG00000034687	Fras1	E130113P14Rik|bl|mKIAA1500	Fraser extracellular matrix complex subunit 1	protein-coding	0.005000	0.348259	
mm_56875.1	chr6	118883513	118883713	-	1	NA	NA	NA	3455	NR_046053	74363	Mm.399403	NR_046053		4931430N09Rik	-	RIKEN cDNA 4931430N09 gene	ncRNA	0.010000	0.417910	
mm_67483.1	chr7	80712913	80713113	-	1	NA	NA	NA	-24136	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.010000	0.328358	
mm_17824.1	chr2	33887314	33887514	-	1	NA	NA	NA	532	NM_175184	72543	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.170000	0.820896	
mm_20843.1	chr2	148033935	148034135	-	1	NA	NA	NA	11429	NM_001291067	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.000000	0.492537	
mm_43464.1	chr5	136692863	136693063	+	1	NA	NA	NA	-183	NM_001303019	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.010000	0.472637	
mm_59930.1	chr7	30423353	30423553	+	1	NA	NA	NA	149	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.045000	0.572139	
mm_80096.1	chr9	70270859	70271059	+	1	NA	NA	NA	63609	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.010000	0.343284	
mm_4984.1	chr1	191717948	191718148	+	1	NA	NA	NA	24	NM_172266	226856	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0.165000	0.820896	
mm_166429.1	chr5	137152600	137152800	-	1	NA	NA	NA	-36493	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.010000	0.497512	
mm_79304.1	chr9	52047058	52047258	+	1	NA	NA	NA	8	NM_001104616	19684	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	0.000000	0.477612	
mm_23311.1	chr3	53054579	53054779	+	1	NA	NA	NA	13132	NM_175386	108927	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968	lipoma HMGIC fusion partner	protein-coding	0.010000	0.373134	
mm_56871.1	chr6	118637878	118638078	-	1	NA	NA	NA	-75722	NM_001081112	232339	Mm.276116	NM_001081112	ENSMUSG00000007827	Ankrd26	5730521P14Rik|BC008111|mKIAA1074	ankyrin repeat domain 26	protein-coding	0.025000	0.437811	
mm_157474.1	chrX	48098645	48098845	-	1	NA	NA	NA	-9980	NM_001289729	170745	Mm.129279	NM_133213	ENSMUSG00000037005	Xpnpep2	9030008G12Rik|mAPP	X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	protein-coding	0.020000	0.537313	
mm_145873.1	chr18	65471483	65471683	+	1	NA	NA	NA	40586	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.313433	
mm_30824.1	chr4	21873924	21874124	+	1	NA	NA	NA	-5651	NM_172687	230027	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	0.045000	0.542289	
mm_8226.1	chr1	138174246	138174446	-	1	NA	NA	NA	780	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.462687	-13(GCCTTGAAAAGG,-,0.00)
mm_77584.1	chr8	123858781	123858981	-	1	NA	NA	NA	1328	NM_028536	73420	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	0.040000	0.552239	-59(CCCTTTATGACC,+,0.00)
mm_6402.1	chr1	72862201	72862401	-	1	NA	NA	NA	12564	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.035000	0.537313	
mm_39798.1	chr5	30622360	30622560	+	1	NA	NA	NA	-25476	NR_049199	100885838		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.140000	0.726368	
mm_838.1	chr1	51585270	51585470	+	1	NA	NA	NA	-106971	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.000000	0.437811	
mm_110979.1	chr12	77054915	77055115	-	1	NA	NA	NA	-92767	NM_001146176	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.010000	0.467662	
mm_105027.1	chr11	100472703	100472903	-	1	NA	NA	NA	-21	NM_172565	217194	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	0.120000	0.651741	
mm_169403.1	chr1	45047545	45047745	+	1	NA	NA	NA	-263893	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.010000	0.497512	
mm_151512.1	chr19	58734822	58735022	+	1	NA	NA	NA	6035	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.020000	0.522388	
mm_12922.1	chr2	84980360	84980560	+	1	NA	NA	NA	-1	NM_008920	19074	Mm.142727	NM_008920	ENSMUSG00000027073	Prg2	EMBP|MBP|mMBP|mMBP-1	proteoglycan 2, bone marrow	protein-coding	0.000000	0.542289	-33(GTCTATAAATGC,-,0.00)
mm_70273.1	chr8	3598262	3598462	+	1	NA	NA	NA	10912	NM_001347111	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.000000	0.522388	
mm_105598.1	chr11	106750555	106750755	-	1	NA	NA	NA	-571	NM_001271375	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.020000	0.477612	
mm_112782.1	chr13	20090572	20090772	+	1	NA	NA	NA	165	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.135000	0.731343	
mm_87203.1	chr10	39613118	39613318	+	1	NA	NA	NA	284	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.040000	0.597015	
mm_70344.1	chr8	4642966	4643166	+	1	NA	NA	NA	29896	NM_145591	233987	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.010000	0.412935	
mm_66241.1	chr7	35552848	35553048	-	1	NA	NA	NA	2980	NM_033080	110959	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	0.010000	0.437811	
mm_139222.1	chr17	47730055	47730255	+	1	NA	NA	NA	3313	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.025000	0.582090	
mm_59902.1	chr7	30314740	30314940	+	1	NA	NA	NA	24	NM_153577	233066	Mm.227325	NM_153577	ENSMUSG00000019737	Syne4	0610012K07Rik|AI428936|Nesp4	spectrin repeat containing, nuclear envelope family member 4	protein-coding	0.020000	0.577114	
mm_120530.1	chr14	67176732	67176932	+	1	NA	NA	NA	-56460	NM_010095	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.025000	0.537313	
mm_150834.1	chr19	44756836	44757036	+	1	NA	NA	NA	-458	NM_011037	18504	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0.105000	0.726368	
mm_96013.1	chr11	59542705	59542905	+	1	NA	NA	NA	119	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.015000	0.412935	
mm_34767.1	chr4	153410726	153410926	+	1	NA	NA	NA	72004	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	0.020000	0.552239	
mm_32245.1	chr4	102568771	102568971	+	1	NA	NA	NA	-1189	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.005000	0.542289	
mm_123080.1	chr14	55743760	55743960	-	1	NA	NA	NA	1824	NM_026819	52585	Mm.21623	NM_026819	ENSMUSG00000002332	Dhrs1	1110029G07Rik|AW112170|D14Ertd484e	dehydrogenase/reductase (SDR family) member 1	protein-coding	0.030000	0.562189	
mm_1804.1	chr1	80757645	80757845	+	1	NA	NA	NA	808	NM_175291	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.015000	0.502488	
mm_152052.1	chr19	6264313	6264513	-	1	NA	NA	NA	-230	NR_029830	723957		NR_029830	ENSMUSG00000065582	Mir194-2	Mirn194-2|mir-194-2	microRNA 194-2	ncRNA	0.035000	0.597015	
mm_149922.1	chr19	26621885	26622085	+	1	NA	NA	NA	16825	NM_011416	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.000000	0.378109	
mm_41880.1	chr5	105274102	105274302	+	1	NA	NA	NA	19497	NM_194336	100702	Mm.491210	NM_194336	ENSMUSG00000079362	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	0.000000	0.482587	
mm_44298.1	chr5	8622891	8623091	-	1	NA	NA	NA	-39	NM_198620	242819	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0.135000	0.766169	
mm_155371.1	chrX	71555901	71556101	+	1	NA	NA	NA	84	NM_001293625	15354	Mm.336087	NM_008253	ENSMUSG00000015217	Hmgb3	Hmg2a|Hmg4	high mobility group box 3	protein-coding	0.155000	0.741294	
mm_121230.1	chr14	103055656	103055856	+	1	NA	NA	NA	8744	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.005000	0.427861	
mm_69207.1	chr7	127421931	127422131	-	1	NA	NA	NA	3	NM_026999	69234	Mm.20301	NM_026999	ENSMUSG00000045251	Zfp688	2810407K09Rik|AI326029	zinc finger protein 688	protein-coding	0.090000	0.676617	
mm_51996.1	chr6	92306009	92306209	+	1	NA	NA	NA	-61459	NM_009426	22044	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	0.000000	0.383085	
mm_15502.1	chr2	158028410	158028610	+	1	NA	NA	NA	13	NM_001291135	70470	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	0.120000	0.626866	
mm_162600.1	chr1	183147456	183147656	-	1	NA	NA	NA	1	NM_001278220	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0.010000	0.557214	
mm_160238.1	chr7	103937451	103937651	+	1	NA	NA	NA	169	NM_147119	259123	Mm.377861	NM_147119	ENSMUSG00000073938	Olfr632	MOR2-1	olfactory receptor 632	protein-coding	0.015000	0.512438	
mm_9179.1	chr1	171058279	171058479	-	1	NA	NA	NA	1024	NM_010188	14131	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	0.005000	0.388060	
mm_81694.1	chr9	111182203	111182403	+	1	NA	NA	NA	64192	NM_001164838	71268	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.010000	0.447761	43(GCCCTGTAAAGG,-,0.00)
mm_49003.1	chr6	4756854	4757054	+	1	NA	NA	NA	9648	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.020000	0.482587	
mm_7873.1	chr1	132866708	132866908	-	1	NA	NA	NA	-13547	NM_010732	16980	Mm.39640	NM_010732	ENSMUSG00000026443	Lrrn2	5730406J09Rik|NLRR-2	leucine rich repeat protein 2, neuronal	protein-coding	0.000000	0.507463	
mm_39951.1	chr5	32133146	32133346	+	1	NA	NA	NA	-3226	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.120000	0.726368	
mm_53649.1	chr6	140758853	140759053	+	1	NA	NA	NA	132068	NM_001309436	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.000000	0.467662	
mm_91708.1	chr10	44148696	44148896	-	1	NA	NA	NA	-21651	NR_001582	70365	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	0.080000	0.706468	
mm_169410.1	chr1	45205920	45206120	-	1	NA	NA	NA	-105518	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.035000	0.482587	
mm_115362.1	chr13	112937457	112937657	+	1	NA	NA	NA	9764	NM_172594	218629	Mm.35094	NM_172594	ENSMUSG00000042426	Dhx29	3732415M03|AU043276|Ddxx|E130202M19Rik	DEAH (Asp-Glu-Ala-His) box polypeptide 29	protein-coding	0.020000	0.487562	
mm_45649.1	chr5	77018747	77018947	-	1	NA	NA	NA	16	NR_077218	68246	Mm.319633	NR_077218	ENSMUSG00000086632	1700112J05Rik	1700110A09Rik	RIKEN cDNA 1700112J05 gene	ncRNA	0.025000	0.462687	
mm_144044.1	chr17	90400263	90400463	-	1	NA	NA	NA	55517	NM_001346958	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.010000	0.482587	
mm_144877.1	chr18	36783129	36783329	+	1	NA	NA	NA	20	NM_080636	70791	Mm.282700	NM_080636	ENSMUSG00000019143	Hars2	4631412B19Rik|HARSR|HO3|Harsl	histidyl-tRNA synthetase 2	protein-coding	0.070000	0.562189	
mm_136998.1	chr17	17402874	17403074	+	1	NA	NA	NA	288	NM_025681	66643	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.010000	0.477612	
mm_18284.1	chr2	52558433	52558633	-	1	NA	NA	NA	78	NM_146123	12298	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.015000	0.482587	-26(CTTTTTATGCTC,+,0.00)
mm_82415.1	chr9	14901807	14902007	-	1	NA	NA	NA	2044	NM_176807	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.010000	0.592040	
mm_88718.1	chr10	80158027	80158227	+	1	NA	NA	NA	8445	NM_001305799	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.005000	0.452736	-70(TTTTTTAAAGCT,+,0.00)
mm_57855.1	chr6	129486907	129487107	-	1	NA	NA	NA	-14228	NR_132130	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.005000	0.398010	
mm_38523.1	chr4	141424088	141424288	-	1	NA	NA	NA	3409	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.010000	0.606965	
mm_9563.1	chr1	173976865	173977065	-	1	NA	NA	NA	5879	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.005000	0.363184	
mm_98214.1	chr11	87800946	87801146	+	1	NA	NA	NA	7262	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.025000	0.507463	
mm_106910.1	chr12	8016708	8016908	+	1	NA	NA	NA	39131	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.417910	
mm_100963.1	chr11	6638478	6638678	-	1	NA	NA	NA	71	NM_011709	22373	Mm.268094	NM_011709	ENSMUSG00000000381	Wap	-	whey acidic protein	protein-coding	0.020000	0.547264	
mm_4696.1	chr1	180749717	180749917	+	1	NA	NA	NA	23774	NM_133225	170760	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.000000	0.412935	-19(TGCTTTTTAAGA,-,0.00)
mm_53848.1	chr6	149129853	149130053	+	1	NA	NA	NA	-11560	NM_001252096	320204	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	0.005000	0.373134	42(GGCCATAAAAAT,-,0.00)
mm_100265.1	chr11	117361169	117361369	+	1	NA	NA	NA	28956	NM_001113488	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.040000	0.507463	
mm_154287.1	chr19	60874391	60874591	-	1	NA	NA	NA	47	NM_007452	11757	Mm.29821	NM_007452	ENSMUSG00000024997	Prdx3	AW822249|Aop1|D0Tohi1|Ef2l|Mer5|Prx3|SP22|TDXM	peroxiredoxin 3	protein-coding	0.080000	0.666667	
mm_74122.1	chr8	123117362	123117562	+	1	NA	NA	NA	88	NM_170684	102278	Mm.36434	NM_170684	ENSMUSG00000034796	Cpne7	AW047065	copine VII	protein-coding	0.145000	0.761194	
mm_165287.1	chr2	85048109	85048309	+	1	NA	NA	NA	-2251	NM_001081260	228140	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	0.105000	0.731343	
mm_137561.1	chr17	27685154	27685354	+	1	NA	NA	NA	15	NM_178365	23969	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.105000	0.766169	
mm_113050.1	chr13	23621923	23622123	+	1	NA	NA	NA	535	NM_015787	50709	Mm.170587	NM_015787	ENSMUSG00000051627	Hist1h1e	H1-4|H1.4|H1e|H1f4|H1s-4|H1var2	histone cluster 1, H1e	protein-coding	0.045000	0.587065	
mm_34505.1	chr4	148667113	148667313	+	1	NA	NA	NA	23896	NM_001085505	230909	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	0.025000	0.537313	
mm_106741.1	chr12	3907511	3907711	+	1	NA	NA	NA	15867	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.055000	0.606965	
mm_20181.1	chr2	122595117	122595317	-	1	NA	NA	NA	16060	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.020000	0.338308	
mm_7346.1	chr1	105990132	105990332	-	1	NA	NA	NA	-174	NM_001122676	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.080000	0.661692	
mm_98005.1	chr11	84179573	84179773	+	1	NA	NA	NA	-12197	NM_001037932	628813	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690|OTTMUSG00000000997	predicted gene 11437	protein-coding	0.160000	0.825871	
mm_156206.1	chrX	134585571	134585771	+	1	NA	NA	NA	17	NM_019865	19982	Mm.286408	NM_019865	ENSMUSG00000079435	Rpl36a	L44L|Rpl44	ribosomal protein L36A	protein-coding	0.065000	0.577114	
mm_38333.1	chr4	137593480	137593680	-	1	NA	NA	NA	-609	NM_001347227	170707	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	0.040000	0.482587	
mm_32284.1	chr4	102991162	102991362	+	1	NA	NA	NA	-533	NM_001163768	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.000000	0.452736	
mm_139090.1	chr17	46832298	46832498	+	1	NA	NA	NA	-985	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.015000	0.497512	
mm_81679.1	chr9	111058056	111058256	+	1	NA	NA	NA	-638	NM_001302376	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.015000	0.577114	
mm_12482.1	chr2	71529728	71529928	+	1	NA	NA	NA	383	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.020000	0.442786	
mm_168402.1	chr11	29622108	29622308	-	1	NA	NA	NA	-70690	NM_194053	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.000000	0.487562	
mm_142487.1	chr17	45756525	45756725	-	1	NA	NA	NA	-22781	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0.015000	0.572139	
mm_167674.1	chr9	75410115	75410315	-	1	NA	NA	NA	31	NR_040719	71274	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	0.115000	0.676617	
mm_136106.1	chr16	85173605	85173805	-	1	NA	NA	NA	2	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.145000	0.766169	
mm_36328.1	chr4	70433347	70433547	-	1	NA	NA	NA	-23012	NM_145990	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.000000	0.427861	
mm_170539.1	chr19	39246563	39246763	-	1	NA	NA	NA	17409	NR_033614	638988	Mm.483843	NR_033614	ENSMUSG00000093610	Cyp2c53-ps	Cyp2c53|EG638988	cytochrome P450, family 2, subfamily c, polypeptide 53-ps	pseudo	0.015000	0.393035	
mm_67708.1	chr7	89941105	89941305	-	1	NA	NA	NA	-1	NM_001291288	67669	Mm.28679	NM_026304	ENSMUSG00000062797	Hikeshi	0610007P06Rik|1110002N09Rik|l(7)6Rn|l7Rn6	heat shock protein nuclear import factor	protein-coding	0.055000	0.542289	
mm_160216.1	chr7	99448527	99448727	+	1	NA	NA	NA	-17377	NM_028145	72184	Mm.153585	NM_028145	ENSMUSG00000035298	Klhl35	2810406K13Rik	kelch-like 35	protein-coding	0.020000	0.577114	
mm_100531.1	chr11	120608204	120608404	+	1	NA	NA	NA	-173	NM_153288	208990	Mm.29444	NM_153288	ENSMUSG00000044034	Npb	-	neuropeptide B	protein-coding	0.025000	0.512438	
mm_89708.1	chr10	97692925	97693125	+	1	NA	NA	NA	-34	NM_025724	66716	Mm.56430	NM_025724	ENSMUSG00000047025	Ccer1	4921510H08Rik|AV259683	coiled-coil glutamate-rich protein 1	protein-coding	0.070000	0.656716	1(GTATTTAAAGGC,+,0.00)
mm_130263.1	chr15	96643031	96643231	-	1	NA	NA	NA	-218	NM_001166458	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.035000	0.626866	
mm_51487.1	chr6	83055120	83055320	+	1	NA	NA	NA	-649	NM_019752	64704	Mm.21880	NM_019752	ENSMUSG00000068329	Htra2	AI481710|Omi|Prss25|mnd2	HtrA serine peptidase 2	protein-coding	0.080000	0.631841	
mm_14848.1	chr2	148397391	148397591	+	1	NA	NA	NA	2114	NM_009219	20608	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0.005000	0.482587	
mm_12175.1	chr2	62692523	62692723	+	1	NA	NA	NA	28296	NM_145523	227960	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0.000000	0.393035	-66(CAGTTTATAAAG,-,0.00),-64(GTTTATAAAGCA,+,0.00)
mm_141734.1	chr17	34120300	34120500	-	1	NA	NA	NA	-500	NR_037970	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.100000	0.756219	
mm_32282.1	chr4	102986269	102986469	+	1	NA	NA	NA	-10	NM_001163767	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.020000	0.532338	
mm_48703.1	chr5	147063199	147063399	-	1	NA	NA	NA	13273	NM_080795	140887	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	0.030000	0.432836	
mm_62088.1	chr7	93079822	93080022	+	1	NA	NA	NA	43	NM_021427	58238	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.115000	0.726368	
mm_35391.1	chr4	33513404	33513604	-	1	NA	NA	NA	75423	NR_106198	102465904		NR_106198	ENSMUSG00000098310	Mir8118	Gm27954|mmu-mir-8118	microRNA 8118	ncRNA	0.010000	0.472637	
mm_104788.1	chr11	98707551	98707751	-	1	NA	NA	NA	6338	NM_009971	12985	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.035000	0.582090	
mm_94288.1	chr11	4031510	4031710	+	1	NA	NA	NA	-172	NM_146013	103655	Mm.337476	NM_146013	ENSMUSG00000019368	Sec14l4	AI256582|AW536553|SPF|TAP	SEC14-like lipid binding 4	protein-coding	0.010000	0.522388	
mm_169847.1	chr16	3121130	3121330	-	1	NA	NA	NA	-471168	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.005000	0.447761	
mm_102908.1	chr11	69560078	69560278	-	1	NA	NA	NA	59	NM_007911	13643	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	0.065000	0.686567	
mm_2258.1	chr1	91115202	91115402	+	1	NA	NA	NA	-29801	NM_001033408	329207	Mm.295940	NM_001033408	ENSMUSG00000070732	Rbm44	Gm817	RNA binding motif protein 44	protein-coding	0.020000	0.557214	
mm_18204.1	chr2	46442773	46442973	-	1	NA	NA	NA	746268	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.020000	0.442786	
mm_59450.1	chr7	27133423	27133623	+	1	NA	NA	NA	13568	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.025000	0.462687	
mm_62577.1	chr7	104333218	104333418	+	1	NA	NA	NA	3847	NM_001243916	434218	Mm.485757	NM_001243916	ENSMUSG00000090215	Trim34b	Gm15134|OTTMUSG00000019188|Trim34-2	tripartite motif-containing 34B	protein-coding	0.005000	0.437811	
mm_110682.1	chr12	67110488	67110688	-	1	NA	NA	NA	111961	NM_001193266	320772	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	0.000000	0.258706	
mm_116431.1	chr13	41847534	41847734	-	1	NA	NA	NA	-18	NM_001145875	109254	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.025000	0.537313	
mm_99026.1	chr11	98939804	98940004	+	1	NA	NA	NA	193	NM_001177303	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.045000	0.557214	70(GCCTTAATGCCC,+,0.00)
mm_115761.1	chr13	19193492	19193692	-	1	NA	NA	NA	202221	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.487562	
mm_104590.1	chr11	97041278	97041478	-	1	NA	NA	NA	-9	NM_027026	69297	Mm.250465	NM_027026	ENSMUSG00000020878	Lrrc46	1700006D24Rik	leucine rich repeat containing 46	protein-coding	0.060000	0.582090	61(GGCCAGTAAAGC,-,0.00)
mm_99667.1	chr11	105967552	105967752	+	1	NA	NA	NA	-293	NM_001281819	11421	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0.045000	0.641791	68(CCTTTTCTAGCT,+,0.00)
mm_63075.1	chr7	122219387	122219587	+	1	NA	NA	NA	-9	NM_027363	70261	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.040000	0.577114	
mm_162572.1	chr1	174497666	174497866	-	1	NA	NA	NA	-4059	NM_019445	54418	Mm.330620	NM_019445	ENSMUSG00000028354	Fmn2	AU024104	formin 2	protein-coding	0.005000	0.348259	
mm_80945.1	chr9	102720230	102720430	+	1	NA	NA	NA	2526	NM_019764	56332	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0.025000	0.681592	
mm_21524.1	chr2	163636758	163636958	-	1	NA	NA	NA	-7992	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.020000	0.422886	-69(CGGTTTTAAAGC,-,0.00)
mm_61464.1	chr7	75609835	75610035	+	1	NA	NA	NA	154401	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.025000	0.497512	
mm_62148.1	chr7	97129130	97129330	+	1	NA	NA	NA	47479	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.005000	0.422886	
mm_84960.1	chr9	83613846	83614046	-	1	NA	NA	NA	65608	NM_172507	212531	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.010000	0.537313	-34(AGGCTTAAAAGG,-,0.00),-32(GCTTAAAAGGGG,+,0.00)
mm_72946.1	chr8	92189335	92189535	+	1	NA	NA	NA	166685	NR_110452	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	0.015000	0.487562	
mm_159973.1	chr6	108252950	108253150	+	1	NA	NA	NA	39954	NM_010585	16438	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|ENSMUSG00000072853|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0.015000	0.497512	
mm_155354.1	chrX	69360247	69360447	+	1	NA	NA	NA	16	NM_008032	14266	Mm.466576	NM_008032	ENSMUSG00000031189	Aff2	FMR2P|Fmr2|Ox19|Oxh	AF4/FMR2 family, member 2	protein-coding	0.125000	0.721393	
mm_136338.1	chr16	92596051	92596251	-	1	NA	NA	NA	98004	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	0.015000	0.522388	
mm_69022.1	chr7	126792128	126792328	-	1	NA	NA	NA	243	NM_019674	56420	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|Ppx	protein phosphatase 4, catalytic subunit	protein-coding	0.095000	0.746269	
mm_64215.1	chr7	141482007	141482207	+	1	NA	NA	NA	5727	NM_001252588	64540	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.140000	0.771144	
mm_8870.1	chr1	162859718	162859918	-	1	NA	NA	NA	182	NM_001330291	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.030000	0.547264	
mm_27996.1	chr3	82547997	82548197	-	1	NA	NA	NA	-12	NM_001205099	18167	Mm.1433	NM_008731	ENSMUSG00000028004	Npy2r	NPY2-R	neuropeptide Y receptor Y2	protein-coding	0.050000	0.621891	
mm_36340.1	chr4	72852505	72852705	-	1	NA	NA	NA	29	NM_001199270	353204	Mm.317892	NM_001199270	ENSMUSG00000059343	Aldoart1	4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2	aldolase 1 A, retrogene 1	protein-coding	0.045000	0.547264	
mm_163893.1	chr14	27341676	27341876	+	1	NA	NA	NA	5739	NM_001289687	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.015000	0.492537	
mm_55319.1	chr6	55173380	55173580	-	1	NA	NA	NA	1510	NM_009349	21743	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	0.040000	0.582090	
mm_25109.1	chr3	101426951	101427151	+	1	NA	NA	NA	49926	NM_207205	78908	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	0.025000	0.542289	
mm_92892.1	chr10	82955099	82955299	-	1	NA	NA	NA	-30298	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.025000	0.502488	
mm_17559.1	chr2	30178348	30178548	-	1	NA	NA	NA	11	NM_172660	227695	Mm.4449	NM_172660	ENSMUSG00000039660	Spout1	9930028P05|AL033358|D2Wsu81e	SPOUT domain containing methyltransferase 1	protein-coding	0.095000	0.691542	
mm_164008.1	chr14	68533711	68533911	-	1	NA	NA	NA	-122	NM_007402	11500	Mm.261495	NM_007402	ENSMUSG00000022056	Adam7	ADAM 7|EAP1|EAPI	a disintegrin and metallopeptidase domain 7	protein-coding	0.005000	0.482587	
mm_23487.1	chr3	60501166	60501366	+	1	NA	NA	NA	87	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.165000	0.756219	
mm_169228.1	chr13	67072936	67073136	+	1	NA	NA	NA	8509	NM_001012448	432769	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding	0.005000	0.452736	
mm_108364.1	chr12	80793003	80793203	+	1	NA	NA	NA	2571	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.025000	0.517413	
mm_164288.1	chr15	103751850	103752050	-	1	NA	NA	NA	3548	NR_126081	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.000000	0.358209	
mm_127594.1	chr15	102392846	102393046	+	1	NA	NA	NA	-13370	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.000000	0.412935	
mm_13019.1	chr2	91016667	91016867	+	1	NA	NA	NA	-18860	NM_009023	19400	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	0.005000	0.283582	
mm_9820.1	chr1	182341505	182341705	-	1	NA	NA	NA	1	NM_175127	67948	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0.080000	0.656716	
mm_59479.1	chr7	27461342	27461542	+	1	NA	NA	NA	9024	NM_001290525	233016	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0.005000	0.383085	
mm_80177.1	chr9	72274890	72275090	+	1	NA	NA	NA	102	NM_001311105	235469	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	0.150000	0.786070	
mm_95789.1	chr11	54960443	54960643	+	1	NA	NA	NA	2397	NM_021327	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.020000	0.527363	
mm_5118.1	chr1	7088661	7088861	-	1	NA	NA	NA	-159	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.095000	0.636816	
mm_10461.1	chr2	14306938	14307138	+	1	NA	NA	NA	46035	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.000000	0.402985	
mm_157764.1	chrX	73672928	73673128	-	1	NA	NA	NA	-105	NM_001142810	102857	Mm.274553	NM_133987	ENSMUSG00000019558	Slc6a8	AA589632|CRT|CRTR|CT1|CTR5|Creat	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	protein-coding	0.060000	0.656716	
mm_138385.1	chr17	35049639	35049839	+	1	NA	NA	NA	-504	NM_033444	114584	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.025000	0.626866	
mm_153351.1	chr19	39886645	39886845	-	1	NA	NA	NA	24	NM_001104525	100043108	Mm.482331	NM_001104525	ENSMUSG00000092008	Cyp2c69	AI098658	cytochrome P450, family 2, subfamily c, polypeptide 69	protein-coding	0.010000	0.407960	
mm_44389.1	chr5	17829092	17829292	-	1	NA	NA	NA	6704	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.010000	0.348259	
mm_150314.1	chr19	34573286	34573486	+	1	NA	NA	NA	-10143	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.000000	0.487562	
mm_30170.1	chr3	144201866	144202066	-	1	NA	NA	NA	366	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.075000	0.666667	
mm_109013.1	chr12	103388590	103388790	+	1	NA	NA	NA	8	NM_001177841	68149	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	0.105000	0.656716	
mm_117448.1	chr13	74807792	74807992	-	1	NA	NA	NA	68	NM_009817	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.065000	0.597015	
mm_62963.1	chr7	119793647	119793847	+	1	NA	NA	NA	311	NM_027698	71151	Mm.274160	NM_027698	ENSMUSG00000030929	Eri2	4933424N09Rik|Exod1|mKIAA1504	exoribonuclease 2	protein-coding	0.050000	0.592040	
mm_117117.1	chr13	60672766	60672966	-	1	NA	NA	NA	70655	NM_134062	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.025000	0.457711	
mm_137819.1	chr17	30135102	30135302	+	1	NA	NA	NA	121333	NR_105839	102465223		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0.010000	0.393035	
mm_83542.1	chr9	46234615	46234815	-	1	NA	NA	NA	584	NM_001289833	11814	Mm.390161	NM_023114	ENSMUSG00000032081	Apoc3	apo-CIII|apoC-III	apolipoprotein C-III	protein-coding	0.025000	0.582090	
mm_67551.1	chr7	81566866	81567066	-	1	NA	NA	NA	15	NM_172904	244091	Mm.38773	NM_172904	ENSMUSG00000038663	Fsd2	9830160G03Rik|Spryd1	fibronectin type III and SPRY domain containing 2	protein-coding	0.020000	0.537313	
mm_20911.1	chr2	150600279	150600479	-	1	NA	NA	NA	8144	NM_027977	71881	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	0.010000	0.517413	
mm_67053.1	chr7	67363350	67363550	-	1	NA	NA	NA	9408	NM_001291192	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.000000	0.268657	
mm_30895.1	chr4	32291691	32291891	+	1	NA	NA	NA	-125644	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.020000	0.492537	
mm_61518.1	chr7	78913729	78913929	+	1	NA	NA	NA	64	NM_020583	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.030000	0.601990	
mm_15120.1	chr2	153741255	153741455	+	1	NA	NA	NA	68	NM_007896	13589	Mm.143877	NM_007896	ENSMUSG00000027479	Mapre1	5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1	microtubule-associated protein, RP/EB family, member 1	protein-coding	0.180000	0.741294	
mm_22076.1	chr2	168749846	168750046	-	1	NA	NA	NA	-7810	NM_001289446	11981	Mm.330819	NM_015731	ENSMUSG00000027546	Atp9a	IIa	ATPase, class II, type 9A	protein-coding	0.005000	0.388060	
mm_69435.1	chr7	132852531	132852731	-	1	NA	NA	NA	16	NM_028095	72096	Mm.28631	NM_028095	ENSMUSG00000030960	Mettl10	2010208K18Rik	methyltransferase like 10	protein-coding	0.080000	0.636816	
mm_161291.1	chr14	26221806	26222006	+	1	NA	NA	NA	2	NM_001270506	100039213	Mm.441404	NM_001270506	ENSMUSG00000098463	Cphx2	Gm2104	cytoplasmic polyadenylated homeobox 2	protein-coding	0.005000	0.457711	
mm_155483.1	chrX	73676619	73676819	+	1	NA	NA	NA	3586	NM_001142809	102857	Mm.274553	NM_133987	ENSMUSG00000019558	Slc6a8	AA589632|CRT|CRTR|CT1|CTR5|Creat	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	protein-coding	0.005000	0.487562	
mm_122336.1	chr14	37134994	37135194	-	1	NA	NA	NA	45	NM_001199122	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.105000	0.711443	
mm_12745.1	chr2	79122701	79122901	+	1	NA	NA	NA	-132625	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.000000	0.487562	
mm_60605.1	chr7	44572293	44572493	+	1	NA	NA	NA	-52	NM_008437	16541	Mm.383181	NM_008437	ENSMUSG00000002204	Napsa	KAP|Kdap|NAP1|SNAPA|pronapsin	napsin A aspartic peptidase	protein-coding	0.015000	0.517413	
mm_38018.1	chr4	133754208	133754408	-	1	NA	NA	NA	-697	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.130000	0.716418	
mm_90645.1	chr10	128720145	128720345	+	1	NA	NA	NA	13987	NM_021882	20431	Mm.16756	NM_021882	ENSMUSG00000025359	Pmel	D10H12S53E|D12S53Eh|Pmel17|Si|Silv|gp100|gp87	premelanosome protein	protein-coding	0.010000	0.427861	-80(GCTTTTAAATCT,+,0.00)
mm_52328.1	chr6	108857396	108857596	+	1	NA	NA	NA	28855	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.005000	0.462687	
mm_97549.1	chr11	78928495	78928695	+	1	NA	NA	NA	3304	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.020000	0.527363	
mm_108220.1	chr12	77066145	77066345	+	1	NA	NA	NA	-103997	NM_001146176	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.005000	0.497512	
mm_162843.1	chr10	86300539	86300739	+	1	NA	NA	NA	227	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.090000	0.656716	
mm_39651.1	chr5	24685879	24686079	+	1	NA	NA	NA	164	NM_001305264	53312	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0.130000	0.751244	
mm_66414.1	chr7	44506102	44506302	-	1	NA	NA	NA	9614	NM_028169	75538	Mm.258841	NM_028169	ENSMUSG00000051113	Fam71e1	0610007G24Rik|1700021N13Rik|1700021P22Rik|GARI-L5	family with sequence similarity 71, member E1	protein-coding	0.050000	0.611940	
mm_127515.1	chr15	101850247	101850447	+	1	NA	NA	NA	439	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.035000	0.621891	
mm_25429.1	chr3	107895738	107895938	+	1	NA	NA	NA	-16	NM_010360	14866	Mm.282351	NM_010360	ENSMUSG00000004032	Gstm5	-	glutathione S-transferase, mu 5	protein-coding	0.085000	0.641791	
mm_141694.1	chr17	33978638	33978838	-	1	NA	NA	NA	53	NR_004446	630499	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	0.055000	0.656716	
mm_112816.1	chr13	20796343	20796543	+	1	NA	NA	NA	2330	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.412935	
mm_100499.1	chr11	120482234	120482434	+	1	NA	NA	NA	-2335	NM_027204	56282	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	0.005000	0.452736	
mm_167477.1	chr8	129067011	129067211	+	1	NA	NA	NA	-23	NM_029292	75453	Mm.286964	NM_029292	ENSMUSG00000056018	Ccdc7b	1700008F21Rik	coiled-coil domain containing 7B	protein-coding	0.045000	0.597015	
mm_3127.1	chr1	134723316	134723516	+	1	NA	NA	NA	76735	NM_009307	20980	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194	synaptotagmin II	protein-coding	0.005000	0.432836	
mm_21587.1	chr2	164237329	164237529	-	1	NA	NA	NA	912	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.417910	
mm_159040.1	chr1	180893168	180893368	+	1	NA	NA	NA	160	NM_177099	320202	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0.030000	0.651741	
mm_136500.1	chr16	96439539	96439739	-	1	NA	NA	NA	3975	NM_008405	16415	Mm.12872	NM_008405	ENSMUSG00000000157	Itgb2l	5033406G21Rik|pactolus	integrin beta 2-like	protein-coding	0.015000	0.547264	
mm_21173.1	chr2	154738387	154738587	-	1	NA	NA	NA	-52623	NM_001139512	19383	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	0.010000	0.527363	
mm_158531.1	chrX	143861245	143861445	-	1	NA	NA	NA	-33933	NM_007603	12338	Mm.30290	NM_007603	ENSMUSG00000067276	Capn6	-	calpain 6	protein-coding	0.000000	0.383085	
mm_48491.1	chr5	142608664	142608864	-	1	NA	NA	NA	-12	NM_175217	75104	Mm.48712	NM_175217	ENSMUSG00000039533	Mmd2	4930518M15Rik|C88001	monocyte to macrophage differentiation-associated 2	protein-coding	0.085000	0.691542	
mm_157856.1	chrX	75082221	75082421	-	1	NA	NA	NA	2584	NM_181584	210710	Mm.267056	NM_181584	ENSMUSG00000032750	Gab3	5930433H21Rik	growth factor receptor bound protein 2-associated protein 3	protein-coding	0.005000	0.303483	
mm_110871.1	chr12	73744775	73744975	-	1	NA	NA	NA	-156449	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.020000	0.512438	
mm_153674.1	chr19	44396350	44396550	-	1	NA	NA	NA	11259	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.532338	
mm_62977.1	chr7	120116659	120116859	+	1	NA	NA	NA	14333	NM_145586	233806	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	0.000000	0.527363	
mm_103072.1	chr11	69880852	69881052	-	1	NA	NA	NA	33	NM_153143	216858	Mm.239498	NM_153143	ENSMUSG00000046731	Kctd11	AF465352|Ren	potassium channel tetramerisation domain containing 11	protein-coding	0.060000	0.651741	-61(TCGCTTAAAGGG,-,0.00),-59(GCTTAAAGGGCC,+,0.00)
mm_161976.1	chr19	13190467	13190667	+	1	NA	NA	NA	-102	NM_146693	258688	Mm.271529	NM_146693	ENSMUSG00000094721	Olfr1462	MOR202-13	olfactory receptor 1462	protein-coding	0.000000	0.457711	
mm_11096.1	chr2	28001872	28002072	+	1	NA	NA	NA	82906	NM_010190	14134	Mm.182935	NM_010190	ENSMUSG00000026835	Fcnb	Fcn2	ficolin B	protein-coding	0.000000	0.492537	
mm_129501.1	chr15	78855619	78855819	-	1	NA	NA	NA	-190	NM_025622	107753	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	0.030000	0.552239	
mm_32526.1	chr4	108861599	108861799	+	1	NA	NA	NA	13842	NM_029571	100087	Mm.440007	NM_029571	ENSMUSG00000073775	Kti12	1110001A12Rik|AI326810|AU014758	KTI12 homolog, chromatin associated	protein-coding	0.015000	0.402985	
mm_105939.1	chr11	115187240	115187440	-	1	NA	NA	NA	-24	NM_025400	66176	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	0.095000	0.651741	
mm_123866.1	chr14	72556104	72556304	-	1	NA	NA	NA	153799	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.010000	0.442786	
mm_159879.1	chr6	8192561	8192761	-	1	NA	NA	NA	-44	NM_001037865	213945	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	0.000000	0.442786	
mm_77528.1	chr8	123013128	123013328	-	1	NA	NA	NA	29056	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.010000	0.452736	
mm_109413.1	chr12	110483929	110484129	+	1	NA	NA	NA	-1710	NM_001081457	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.015000	0.532338	
mm_139366.1	chr17	51178626	51178826	+	1	NA	NA	NA	626	NM_028162	72238	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.085000	0.661692	
mm_150922.1	chr19	46131796	46131996	+	1	NA	NA	NA	-3	NM_007703	12686	Mm.21806	NM_007703	ENSMUSG00000038754	Elovl3	CIN-2|Cig30	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3	protein-coding	0.055000	0.567164	
mm_86224.1	chr9	120135694	120135894	-	1	NA	NA	NA	5360	NR_002902	104433	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	0.010000	0.557214	
mm_81770.1	chr9	114418361	114418561	+	1	NA	NA	NA	17366	NM_001200002	100504715	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	0.025000	0.547264	
mm_91701.1	chr10	44004336	44004536	-	1	NA	NA	NA	410	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.065000	0.656716	
mm_156469.1	chrX	143518587	143518787	+	1	NA	NA	NA	96	NM_001195048	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding	0.045000	0.582090	
mm_15418.1	chr2	156840620	156840820	+	1	NA	NA	NA	713	NM_173396	228839	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0.105000	0.696517	
mm_87272.1	chr10	41810109	41810309	+	1	NA	NA	NA	-341	NM_026643	103268	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	0.060000	0.706468	
mm_51375.1	chr6	72993465	72993665	+	1	NA	NA	NA	-34817	NM_001190327	19240	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.015000	0.582090	
mm_100037.1	chr11	114983718	114983918	+	1	NA	NA	NA	6068	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.010000	0.452736	
mm_55125.1	chr6	50566470	50566670	-	1	NA	NA	NA	-73	NR_015581	73183	Mm.430720	NR_015581	ENSMUSG00000085776	5430402O13Rik	3110047M22Rik	RIKEN cDNA 5430402O13 gene	ncRNA	0.120000	0.666667	
mm_66404.1	chr7	44475668	44475868	-	1	NA	NA	NA	5421	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.542289	
mm_105347.1	chr11	102999703	102999903	-	1	NA	NA	NA	118	NR_105896	102466988		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.040000	0.567164	
mm_7522.1	chr1	124060469	124060669	-	1	NA	NA	NA	-15010	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.010000	0.333333	-80(AAGTATATAAGC,-,0.00),15(GACTTTAAATGG,-,0.00)
mm_32901.1	chr4	119105926	119106126	+	1	NA	NA	NA	-2719	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.040000	0.587065	66(TCCTTTAAGGGC,+,0.00),67(CCTTTAAGGGCT,+,0.00)
mm_157442.1	chrX	41288782	41288982	-	1	NA	NA	NA	-112419	NM_016886	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding	0.010000	0.512438	
mm_41967.1	chr5	107331077	107331277	+	1	NA	NA	NA	-17	NM_001079873	114642	Mm.182836	NM_054054	ENSMUSG00000029279	Brdt	7420412D09Rik|Brd6|Fsrg3	bromodomain, testis-specific	protein-coding	0.085000	0.646766	-17(TCCCATAAAGGC,-,0.00)
mm_112985.1	chr13	21362810	21363010	+	1	NA	NA	NA	90	NM_016684	22758	Mm.24124	NM_016684	ENSMUSG00000036721	Zscan12	2510038J07Rik|FPM315|Zfp96|mKIAA0426|zfp-96	zinc finger and SCAN domain containing 12	protein-coding	0.085000	0.681592	
mm_117644.1	chr13	92576083	92576283	-	1	NA	NA	NA	49	NM_030237	79401	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	0.000000	0.522388	
mm_68239.1	chr7	105396118	105396318	-	1	NA	NA	NA	3836	NM_001242364	74349	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	0.000000	0.462687	
mm_102589.1	chr11	61891555	61891755	-	1	NA	NA	NA	-36563	NM_013881	29869	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.010000	0.412935	11(GGCTCTTAATGG,-,0.00)
mm_171494.1	chr4	146156932	146157132	+	1	NA	NA	NA	205	NM_001177546	667666	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164|OTTMUSG00000010694	zinc finger protein 600	protein-coding	0.015000	0.477612	
mm_160361.1	chr8	21858773	21858973	+	1	NA	NA	NA	-28	NM_139225	246085	Mm.220170	NM_139225	ENSMUSG00000044743	Defb10	BD-10|Defb7	defensin beta 10	protein-coding	0.000000	0.527363	
mm_4340.1	chr1	171856522	171856722	+	1	NA	NA	NA	16925	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.010000	0.313433	
mm_8604.1	chr1	156035238	156035438	-	1	NA	NA	NA	-326	NM_172843	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.030000	0.383085	
mm_115456.1	chr13	119408106	119408306	+	1	NA	NA	NA	805	NM_008710	18115	Mm.132584	NM_008710	ENSMUSG00000025453	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.010000	0.542289	
mm_12422.1	chr2	70562763	70562963	+	1	NA	NA	NA	494	NR_040496	68986	Mm.437697	NR_040496	ENSMUSG00000087264	Gad1os	1500002O10Rik	glutamate decarboxylase 1, opposite strand	ncRNA	0.070000	0.587065	
mm_557.1	chr1	38021613	38021813	+	1	NA	NA	NA	23703	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.010000	0.398010	
mm_45591.1	chr5	74531610	74531810	-	1	NA	NA	NA	32	NM_178672	212986	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	0.120000	0.641791	
mm_81007.1	chr9	103457500	103457700	+	1	NA	NA	NA	22728	NM_001002896	107993	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding	0.005000	0.358209	
mm_79829.1	chr9	64789570	64789770	+	1	NA	NA	NA	-21341	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.020000	0.402985	
mm_19238.1	chr2	84715089	84715289	-	1	NA	NA	NA	-25	NM_144887	228136	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0.195000	0.781095	
mm_146560.1	chr18	6241173	6241373	-	1	NA	NA	NA	251	NM_008448	16573	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.120000	0.726368	
mm_146055.1	chr18	69645229	69645429	+	1	NA	NA	NA	-280230	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.000000	0.263682	
mm_43828.1	chr5	142971994	142972194	+	1	NA	NA	NA	11739	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.050000	0.641791	
mm_8901.1	chr1	163289125	163289325	-	1	NA	NA	NA	24425	NM_011127	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.020000	0.373134	
mm_138458.1	chr17	35140143	35140343	+	1	NA	NA	NA	4529	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.025000	0.522388	
mm_27484.1	chr3	54389275	54389475	-	1	NA	NA	NA	28268	NM_015784	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0.005000	0.388060	
mm_113763.1	chr13	44782315	44782515	+	1	NA	NA	NA	51144	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.005000	0.432836	
mm_18685.1	chr2	71376643	71376843	-	1	NA	NA	NA	-9189	NM_172436	78830	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.030000	0.542289	
mm_21404.1	chr2	158028309	158028509	-	1	NA	NA	NA	-88	NM_001291134	70470	Mm.290810	NM_027434	ENSMUSG00000027651	Rprd1b	2610304G08Rik|2810446G03Rik|Crept	regulation of nuclear pre-mRNA domain containing 1B	protein-coding	0.090000	0.606965	
mm_48547.1	chr5	142905644	142905844	-	1	NA	NA	NA	1010	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.115000	0.656716	
mm_124229.1	chr14	101198855	101199055	-	1	NA	NA	NA	1114	NM_029680	76627	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	0.010000	0.517413	
mm_34999.1	chr4	156186084	156186284	+	1	NA	NA	NA	11304	NM_021604	11603	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0.095000	0.696517	
mm_32855.1	chr4	118289784	118289984	+	1	NA	NA	NA	1513	NM_011213	19268	Mm.29855	NM_011213	ENSMUSG00000033295	Ptprf	AA591035|LAR|LARS|RPTP-LAR	protein tyrosine phosphatase, receptor type, F	protein-coding	0.015000	0.597015	
mm_59124.1	chr7	19915403	19915603	+	1	NA	NA	NA	5640	NM_027514	52118	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.005000	0.412935	21(GAATATAAAAGG,-,0.00)
mm_24770.1	chr3	95526706	95526906	+	1	NA	NA	NA	20	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.015000	0.472637	-51(GTCTTTAAATGA,-,0.00),19(CTTTTTAGAGTC,+,0.00)
mm_147505.1	chr18	50135148	50135348	-	1	NA	NA	NA	7047	NM_008292	15488	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.010000	0.447761	
mm_159865.1	chr5	143894756	143894956	-	1	NA	NA	NA	211	NM_025732	66729	Mm.439817	NM_025732	ENSMUSG00000029607	Ankrd61	4921520G13Rik	ankyrin repeat domain 61	protein-coding	0.020000	0.562189	
mm_104501.1	chr11	95914768	95914968	-	1	NA	NA	NA	3	NM_008081	14422	Mm.340702	NM_008081	ENSMUSG00000013418	B4galnt2	AI593864|Dlb-1|Dlb1|Galg2|Galgt2|Ggm3|Igf2bp1	beta-1,4-N-acetyl-galactosaminyl transferase 2	protein-coding	0.090000	0.676617	
mm_62836.1	chr7	113765991	113766191	+	1	NA	NA	NA	93	NM_145584	233744	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.085000	0.646766	
mm_113235.1	chr13	27249448	27249648	+	1	NA	NA	NA	7118	NM_008865	18776	Mm.37203	NM_008865	ENSMUSG00000038891	Prl3b1	Csh2|Ghd8|PL|Pl-2|Pl2|mPL-II|mplII	prolactin family 3, subfamily b, member 1	protein-coding	0.025000	0.457711	
mm_141928.1	chr17	35027762	35027962	-	1	NA	NA	NA	154	NR_028258	78376	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	0.025000	0.626866	
mm_21457.1	chr2	160860137	160860337	-	1	NA	NA	NA	12753	NM_177263	320799	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	0.005000	0.427861	
mm_108547.1	chr12	84408971	84409171	+	1	NA	NA	NA	3	NM_028377	72873	Mm.440428	NM_028377	ENSMUSG00000057265	Bbof1	2900006K08Rik|AI427784|Ccdc176	basal body orientation factor 1	protein-coding	0.170000	0.756219	
mm_78523.1	chr9	34488697	34488897	+	1	NA	NA	NA	66	NM_001190911	67703	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kin of IRRE like 3 (Drosophila)	protein-coding	0.075000	0.616915	
mm_74004.1	chr8	121083749	121083949	+	1	NA	NA	NA	-537	NM_010426	15227	Mm.33897	NM_010426	ENSMUSG00000042812	Foxf1	AI450827|FREAC1|Foxf1a|Freac-1|HFH-8|Hfh8	forkhead box F1	protein-coding	0.135000	0.766169	
mm_164166.1	chr15	73751327	73751527	+	1	NA	NA	NA	3401	NM_008975	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.040000	0.597015	
mm_50140.1	chr6	41543228	41543428	+	1	NA	NA	NA	21552	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.025000	0.502488	
mm_13810.1	chr2	119167669	119167869	+	1	NA	NA	NA	-19	NM_177157	320415	Mm.86373	NM_177157	ENSMUSG00000046814	Gchfr	2010323F13Rik|GFRP|P35	GTP cyclohydrolase I feedback regulator	protein-coding	0.120000	0.701493	
mm_97173.1	chr11	75531916	75532116	+	1	NA	NA	NA	-96	NM_001199283	215113	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.140000	0.681592	
mm_148160.1	chr18	77690087	77690287	-	1	NA	NA	NA	23823	NM_178670	212163	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	0.005000	0.328358	
mm_102478.1	chr11	60099883	60100083	-	1	NA	NA	NA	-5030	NM_009021	19377	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.005000	0.562189	
mm_126834.1	chr15	89019124	89019324	+	1	NA	NA	NA	36230	NM_031260	83456	Mm.358791	NM_031260	ENSMUSG00000015365	Mov10l1	CHAMP|Csm	Moloney leukemia virus 10-like 1	protein-coding	0.010000	0.457711	
mm_150931.1	chr19	46305612	46305812	+	1	NA	NA	NA	17	NM_019408	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.100000	0.716418	
mm_70787.1	chr8	22506375	22506575	+	1	NA	NA	NA	-29596	NM_001146117	102032	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	0.025000	0.467662	-95(TCCCATTAAAGA,-,0.00)
mm_102554.1	chr11	61377991	61378191	-	1	NA	NA	NA	-16	NM_026183	67473	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	0.100000	0.711443	
mm_95420.1	chr11	50131226	50131426	+	1	NA	NA	NA	-34	NM_001290759	76795	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.140000	0.766169	
mm_148009.1	chr18	68227524	68227724	-	1	NA	NA	NA	33349	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0.015000	0.487562	
mm_12180.1	chr2	64820782	64820982	+	1	NA	NA	NA	201884	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0.025000	0.462687	
mm_164575.1	chr17	24593046	24593246	+	1	NA	NA	NA	39481	NM_011647	22084	Mm.30435	NM_011647	ENSMUSG00000002496	Tsc2	Nafld|Tcs2	tuberous sclerosis 2	protein-coding	0.015000	0.512438	
mm_104763.1	chr11	98477308	98477508	-	1	NA	NA	NA	30574	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.025000	0.412935	
mm_130465.1	chr15	98609627	98609827	-	1	NA	NA	NA	-2094	NM_007405	11512	Mm.157091	NM_007405	ENSMUSG00000022994	Adcy6	AC6|mKIAA0422	adenylate cyclase 6	protein-coding	0.105000	0.746269	
mm_60826.1	chr7	45706139	45706339	+	1	NA	NA	NA	992	NM_016974	13170	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.015000	0.537313	
mm_106500.1	chr11	120349753	120349953	-	1	NA	NA	NA	1175	NR_038126	66838	Mm.375010	NR_038126	ENSMUSG00000043644	0610009L18Rik	-	RIKEN cDNA 0610009L18 gene	ncRNA	0.020000	0.587065	
mm_92274.1	chr10	71181938	71182138	-	1	NA	NA	NA	2	NR_038040	319572	Mm.211663	NR_038040		C730027H18Rik	-	RIKEN cDNA C730027H18 gene	ncRNA	0.015000	0.338308	
mm_19485.1	chr2	93162843	93163043	-	1	NA	NA	NA	-24641	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.015000	0.497512	
mm_52721.1	chr6	119904158	119904358	+	1	NA	NA	NA	1560	NM_001166381	19365	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.010000	0.398010	
mm_73594.1	chr8	109997474	109997674	+	1	NA	NA	NA	7138	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.030000	0.487562	
mm_114005.1	chr13	52596753	52596953	+	1	NA	NA	NA	-29	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.000000	0.477612	
mm_109583.1	chr12	112603939	112604139	+	1	NA	NA	NA	15255	NM_198411	70435	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.015000	0.601990	
mm_86328.1	chr9	123061699	123061899	-	1	NA	NA	NA	27058	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.015000	0.472637	
mm_56840.1	chr6	117299438	117299638	-	1	NA	NA	NA	131003	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.020000	0.492537	
mm_103796.1	chr11	82889894	82890094	-	1	NA	NA	NA	630	NR_102719	19364	Mm.9286	NM_011235	ENSMUSG00000018841	Rad51d	R51H3|Rad51l3|TRAD|Trad-d5	RAD51 paralog D	protein-coding	0.020000	0.572139	
mm_163752.1	chr13	119770102	119770302	-	1	NA	NA	NA	-14320	NM_175538	245269	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0.010000	0.427861	
mm_94576.1	chr11	11690091	11690291	+	1	NA	NA	NA	14	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.010000	0.532338	
mm_64492.1	chr7	143109141	143109341	+	1	NA	NA	NA	1987	NM_008434	16535	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0.005000	0.557214	
mm_136851.1	chr17	12792796	12792996	+	1	NA	NA	NA	-23190	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.010000	0.532338	
mm_132574.1	chr16	38220022	38220222	+	1	NA	NA	NA	74702	NM_010936	18171	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0.025000	0.467662	
mm_72069.1	chr8	71488668	71488868	+	1	NA	NA	NA	665	NM_032544	70359	Mm.142112	NM_032544	ENSMUSG00000007610	Gtpbp3	2410009F13Rik|AI607903	GTP binding protein 3	protein-coding	0.080000	0.621891	
mm_75812.1	chr8	70302814	70303014	-	1	NA	NA	NA	129	NM_021538	59042	Mm.28668	NM_021538	ENSMUSG00000055681	Cope	1110005D17Rik|Cope1	coatomer protein complex, subunit epsilon	protein-coding	0.095000	0.597015	
mm_12608.1	chr2	74683364	74683564	+	1	NA	NA	NA	1141	NM_008273	15431	Mm.207763	NM_008273	ENSMUSG00000042499	Hoxd11	E230017H14Rik|Hox-4.6|Hox-5.4|Hox-5.5	homeobox D11	protein-coding	0.035000	0.567164	
mm_56332.1	chr6	92640694	92640894	-	1	NA	NA	NA	65390	NM_001081146	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.000000	0.437811	
mm_91677.1	chr10	43530748	43530948	-	1	NA	NA	NA	10146	NM_026411	67851	Mm.209953	NM_026411	ENSMUSG00000019797	1700021F05Rik	-	RIKEN cDNA 1700021F05 gene	protein-coding	0.040000	0.562189	
mm_106980.1	chr12	9574419	9574619	+	1	NA	NA	NA	77	NM_011859	23967	Mm.45055	NM_011859	ENSMUSG00000048387	Osr1	Odd1|Osr	odd-skipped related 1 (Drosophila)	protein-coding	0.075000	0.616915	
mm_117012.1	chr13	58113508	58113708	-	1	NA	NA	NA	-11180	NM_001195075	100503085	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0.015000	0.577114	
mm_59034.1	chr7	19316629	19316829	+	1	NA	NA	NA	-6684	NM_001347586	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.010000	0.592040	
mm_116793.1	chr13	53472661	53472861	-	1	NA	NA	NA	19	NM_013601	17702	Mm.1763	NM_013601	ENSMUSG00000021469	Msx2	BB122635|Hox-8|Hox8|Hox8.1	msh homeobox 2	protein-coding	0.090000	0.641791	
mm_29990.1	chr3	135438581	135438781	-	1	NA	NA	NA	-16	NR_030689	319587	Mm.358971	NR_030689	ENSMUSG00000097032	4930539J05Rik	8030475D13Rik	RIKEN cDNA 4930539J05 gene	ncRNA	0.150000	0.726368	
mm_9843.1	chr1	184731773	184731973	-	1	NA	NA	NA	620	NM_008250	15284	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.085000	0.726368	
mm_14260.1	chr2	128204240	128204440	+	1	NA	NA	NA	76765	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.020000	0.447761	
mm_25859.1	chr3	129797510	129797710	+	1	NA	NA	NA	6420	NM_001287224	242235	Mm.302549	NM_001205102	ENSMUSG00000093865	Lrit3	Gm421	leucine-rich repeat, immunoglobulin-like and transmembrane domains 3	protein-coding	0.015000	0.432836	
mm_51524.1	chr6	83179544	83179744	+	1	NA	NA	NA	55	NM_007835	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.015000	0.601990	
mm_128130.1	chr15	31367397	31367597	-	1	NA	NA	NA	262	NM_001164441	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.095000	0.701493	
mm_58037.1	chr6	136804317	136804517	-	1	NA	NA	NA	14	NM_175652	320332	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	0.050000	0.532338	
mm_32234.1	chr4	102254897	102255097	+	1	NA	NA	NA	58	NM_019840	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.005000	0.502488	
mm_39437.1	chr5	16870039	16870239	+	1	NA	NA	NA	316238	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.005000	0.298507	
mm_5459.1	chr1	36333496	36333696	-	1	NA	NA	NA	15162	NR_105863	102465541		NR_105863	ENSMUSG00000098680	Mir6898	Gm27816|mmu-mir-6898	microRNA 6898	ncRNA	0.020000	0.472637	
mm_51060.1	chr6	65778928	65779128	+	1	NA	NA	NA	66	NM_029549	70779	Mm.263355	NM_027547	ENSMUSG00000029913	Prdm5	4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2	PR domain containing 5	protein-coding	0.110000	0.751244	
mm_122842.1	chr14	54724113	54724313	-	1	NA	NA	NA	-12039	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.025000	0.527363	
mm_134989.1	chr16	32144343	32144543	-	1	NA	NA	NA	21033	NM_146069	224109	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.040000	0.537313	
mm_34454.1	chr4	148044162	148044362	+	1	NA	NA	NA	3073	NM_001161798	17769	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	5,10-methylenetetrahydrofolate reductase	protein-coding	0.010000	0.587065	
mm_79130.1	chr9	47544108	47544308	+	1	NA	NA	NA	13856	NM_018770	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.025000	0.507463	
mm_31074.1	chr4	41372219	41372419	+	1	NA	NA	NA	23323	NM_023305	67123	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.015000	0.343284	
mm_138788.1	chr17	37270999	37271199	+	1	NA	NA	NA	865	NM_013819	14991	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	0.020000	0.542289	
mm_14614.1	chr2	136713448	136713648	+	1	NA	NA	NA	98	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.040000	0.592040	
mm_43340.1	chr5	135089823	135090023	+	1	NA	NA	NA	-11657	NM_001199677	194309	Mm.44356	NM_177574	ENSMUSG00000043614	Vps37d	Wbscr24	vacuolar protein sorting 37D	protein-coding	0.105000	0.726368	-34(CAGTCTAAAAGC,-,0.00)
mm_155486.1	chrX	73681624	73681824	+	1	NA	NA	NA	8591	NM_001142809	102857	Mm.274553	NM_133987	ENSMUSG00000019558	Slc6a8	AA589632|CRT|CRTR|CT1|CTR5|Creat	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	protein-coding	0.005000	0.457711	
mm_57545.1	chr6	126712555	126712755	-	1	NA	NA	NA	28019	NM_013568	16494	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	0.015000	0.527363	
mm_97611.1	chr11	78951105	78951305	+	1	NA	NA	NA	25914	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.025000	0.592040	
mm_87771.1	chr10	60294451	60294651	+	1	NA	NA	NA	10090	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.020000	0.562189	
mm_143154.1	chr17	57223159	57223359	-	1	NA	NA	NA	4877	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.025000	0.552239	
mm_162405.1	chr1	86347557	86347757	-	1	NA	NA	NA	3628	NR_028478	100303740	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	0.005000	0.393035	
mm_49985.1	chr6	41033002	41033202	+	1	NA	NA	NA	2407	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.025000	0.477612	
mm_42143.1	chr5	111418095	111418295	+	1	NA	NA	NA	29	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.075000	0.666667	
mm_165171.1	chr2	26916207	26916407	-	1	NA	NA	NA	-114	NM_013678	20931	Mm.389260	NM_013678	ENSMUSG00000014873	Surf2	Surf-2	surfeit gene 2	protein-coding	0.090000	0.631841	
mm_17409.1	chr2	27246745	27246945	-	1	NA	NA	NA	458	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.005000	0.626866	
mm_94325.1	chr11	4260724	4260924	+	1	NA	NA	NA	3256	NM_008501	16878	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.035000	0.616915	
mm_171398.1	chr4	122592862	122593062	+	1	NA	NA	NA	-96297	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	0.020000	0.388060	
mm_19114.1	chr2	79908314	79908514	-	1	NA	NA	NA	-15	NM_001009978	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.005000	0.398010	27(TGGCATAAAAGA,-,0.00)
mm_139539.1	chr17	56709934	56710134	+	1	NA	NA	NA	6887	NM_178926	106639	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0.025000	0.616915	
mm_40633.1	chr5	64829932	64830132	+	1	NA	NA	NA	26509	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.020000	0.472637	
mm_126989.1	chr15	94561490	94561690	+	1	NA	NA	NA	17930	NM_029926	266632	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	0.080000	0.522388	
mm_149853.1	chr19	25076437	25076637	+	1	NA	NA	NA	77008	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.000000	0.393035	
mm_139666.1	chr17	57410698	57410898	+	1	NA	NA	NA	52112	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.462687	
mm_161197.1	chr13	55212981	55213181	+	1	NA	NA	NA	3299	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.020000	0.497512	
mm_74925.1	chr8	25597470	25597670	-	1	NA	NA	NA	-83	NM_173012	270035	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	0.075000	0.636816	
mm_125350.1	chr15	39209935	39210135	+	1	NA	NA	NA	11749	NM_053271	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.000000	0.437811	
mm_67691.1	chr7	89517450	89517650	-	1	NA	NA	NA	36	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.125000	0.791045	
mm_133100.1	chr16	64852740	64852940	+	1	NA	NA	NA	755	NM_178647	106143	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.065000	0.542289	
mm_161367.1	chr14	62997916	62998116	+	1	NA	NA	NA	-61	NM_001039125	654465	Mm.424929	NM_001039125	ENSMUSG00000075573	Defb47	Defb41|EG654465	defensin beta 47	protein-coding	0.030000	0.492537	
mm_83269.1	chr9	42966884	42967084	-	1	NA	NA	NA	-22613	NM_175481	110637	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0.005000	0.417910	
mm_86058.1	chr9	114584169	114584369	-	1	NA	NA	NA	-19900	NM_001042503	636931	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	0.025000	0.557214	72(CCTTTAATATAC,+,0.00)
mm_43418.1	chr5	135994740	135994940	+	1	NA	NA	NA	40	NM_001256098	74198	Mm.275574	NM_023742	ENSMUSG00000004947	Dtx2	2610524D08Rik|AA408415|AU022494|Deltex2	deltex 2, E3 ubiquitin ligase	protein-coding	0.085000	0.631841	
mm_153313.1	chr19	38043302	38043502	-	1	NA	NA	NA	175	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.050000	0.671642	
mm_124869.1	chr15	10177569	10177769	+	1	NA	NA	NA	431	NM_011169	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.040000	0.547264	
mm_142602.1	chr17	46763700	46763900	-	1	NA	NA	NA	-88	NM_011195	19208	Mm.215173	NM_011195	ENSMUSG00000036858	Ptcra	gp33|pT-alpha|pT-alpha-TCR|pT[a]|pTa|pTalpha	pre T cell antigen receptor alpha	protein-coding	0.000000	0.611940	
mm_63735.1	chr7	130891177	130891377	+	1	NA	NA	NA	-16991	NR_106028	102466219		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0.000000	0.447761	-68(CACCATTTAAGG,-,0.00),-66(CCATTTAAGGCA,+,0.00)
mm_8145.1	chr1	136346010	136346210	-	1	NA	NA	NA	-6	NM_001347110	67886	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	0.130000	0.711443	
mm_93529.1	chr10	115332431	115332631	-	1	NA	NA	NA	-16940	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.015000	0.477612	
mm_84813.1	chr9	77435044	77435244	-	1	NA	NA	NA	-35728	NR_040378	70487	Mm.58958	NR_040378	ENSMUSG00000099170	5730403I07Rik	-	RIKEN cDNA 5730403I07 gene	ncRNA	0.030000	0.507463	
mm_165402.1	chr2	137095657	137095857	-	1	NA	NA	NA	20763	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.005000	0.447761	65(GCCTTTAAAGTT,+,0.00)
mm_11986.1	chr2	55435834	55436034	+	1	NA	NA	NA	-36	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.045000	0.582090	
mm_60815.1	chr7	45699773	45699973	+	1	NA	NA	NA	-94	NM_009800	12348	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	0.035000	0.606965	
mm_167443.1	chr8	121729914	121730114	+	1	NA	NA	NA	-545	NM_020605	57340	Mm.306870	NM_020605	ENSMUSG00000025318	Jph3	JP-3|Jp3	junctophilin 3	protein-coding	0.145000	0.786070	-32(CCCTTTAAATCC,+,0.00)
mm_133558.1	chr16	91391656	91391856	+	1	NA	NA	NA	-14479	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.020000	0.398010	
mm_8613.1	chr1	156036028	156036228	-	1	NA	NA	NA	92	NM_001160182	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.115000	0.671642	
mm_3278.1	chr1	136579546	136579746	+	1	NA	NA	NA	-45255	NM_177643	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.030000	0.487562	
mm_74786.1	chr8	22124952	22125152	-	1	NA	NA	NA	1	NM_177898	330721	Mm.113940	NM_177898	ENSMUSG00000037738	Nek5	6530411J22|BB049667	NIMA (never in mitosis gene a)-related expressed kinase 5	protein-coding	0.055000	0.641791	
mm_33938.1	chr4	136945529	136945729	+	1	NA	NA	NA	11187	NM_007939	13842	Mm.1390	NM_007939	ENSMUSG00000028661	Epha8	AW047546|Eek|Hek3|mKIAA1459	Eph receptor A8	protein-coding	0.045000	0.636816	
mm_130137.1	chr15	90898328	90898528	-	1	NA	NA	NA	48	NR_033583	20738	Mm.431547	NR_033583		Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.020000	0.532338	
mm_83501.1	chr9	45955078	45955278	-	1	NA	NA	NA	71	NM_172257	214597	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	0.145000	0.776119	-36(CGCCCTTAAAGG,-,0.00),-35(GCCCTTAAAGGG,-,0.00),-34(CCCTTAAAGGGC,+,0.00),-33(CCTTAAAGGGCC,+,0.00)
mm_6189.1	chr1	65123001	65123201	-	1	NA	NA	NA	113	NM_175293	98303	Mm.348057	NM_175293	ENSMUSG00000044816	D630023F18Rik	AI314969	RIKEN cDNA D630023F18 gene	protein-coding	0.025000	0.502488	
mm_31193.1	chr4	43631285	43631485	+	1	NA	NA	NA	-550	NM_173788	230103	Mm.103477	NM_173788	ENSMUSG00000028469	Npr2	GC-B|GC-B2|GC-B3|cn|mNPR-B|pwe	natriuretic peptide receptor 2	protein-coding	0.145000	0.830846	
mm_139191.1	chr17	47599024	47599224	+	1	NA	NA	NA	5657	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.025000	0.512438	
mm_65695.1	chr7	28375453	28375653	-	1	NA	NA	NA	-2891	NM_001083912	101497	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.015000	0.527363	
mm_56923.1	chr6	119417453	119417653	-	1	NA	NA	NA	-70	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.050000	0.552239	
mm_127330.1	chr15	100421486	100421686	+	1	NA	NA	NA	1469	NM_001146161	18174	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0.005000	0.407960	
mm_144579.1	chr18	31922195	31922395	+	1	NA	NA	NA	-9212	NM_144862	225341	Mm.24551	NM_144862	ENSMUSG00000024395	Lims2	PINCH2	LIM and senescent cell antigen like domains 2	protein-coding	0.035000	0.606965	
mm_92468.1	chr10	78036023	78036223	-	1	NA	NA	NA	-6164	NM_001081695	54427	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.000000	0.417910	
mm_165007.1	chr19	24415939	24416139	+	1	NA	NA	NA	61435	NM_026520	68034	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding	0.010000	0.437811	
mm_27278.1	chr3	41082908	41083108	-	1	NA	NA	NA	38	NM_027558	70804	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0.110000	0.761194	
mm_160345.1	chr8	19494981	19495181	+	1	NA	NA	NA	-16	NM_139220	246080	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	0.005000	0.467662	-34(CACTATATAAGG,-,0.00)
mm_105012.1	chr11	100414609	100414809	-	1	NA	NA	NA	110	NM_176830	66180	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	0.090000	0.751244	
mm_26554.1	chr3	146450385	146450585	+	1	NA	NA	NA	18	NM_001293672	74245	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	0.075000	0.681592	
mm_112845.1	chr13	20835805	20836005	+	1	NA	NA	NA	41792	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.338308	
mm_117000.1	chr13	56895684	56895884	-	1	NA	NA	NA	5	NM_001302372	26946	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding	0.025000	0.512438	
mm_846.1	chr1	52008132	52008332	+	1	NA	NA	NA	-8	NM_011487	20849	Mm.1550	NM_011487	ENSMUSG00000062939	Stat4	-	signal transducer and activator of transcription 4	protein-coding	0.020000	0.482587	
mm_115101.1	chr13	102741245	102741445	+	1	NA	NA	NA	-18910	NR_130318	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.005000	0.368159	
mm_155464.1	chrX	73570310	73570510	+	1	NA	NA	NA	67324	NM_177236	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.040000	0.532338	
mm_59332.1	chr7	25396366	25396566	+	1	NA	NA	NA	-479	NM_010719	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.050000	0.582090	
mm_80153.1	chr9	70931684	70931884	+	1	NA	NA	NA	3024	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.010000	0.462687	
mm_55872.1	chr6	83506744	83506944	-	1	NA	NA	NA	125	NM_013764	27369	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0.125000	0.666667	
mm_51300.1	chr6	72309712	72309912	+	1	NA	NA	NA	5202	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.025000	0.616915	
mm_114717.1	chr13	83656615	83656815	+	1	NA	NA	NA	-71391	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.010000	0.283582	-68(GTTTTTATGGGA,+,0.00)
mm_6985.1	chr1	86357059	86357259	-	1	NA	NA	NA	-832	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.015000	0.472637	
mm_150534.1	chr19	39291457	39291657	+	1	NA	NA	NA	4472	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.000000	0.288557	
mm_85340.1	chr9	102717469	102717669	-	1	NA	NA	NA	-235	NM_019764	56332	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0.075000	0.696517	
mm_92140.1	chr10	66930762	66930962	-	1	NA	NA	NA	-10478	NR_138561	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.020000	0.522388	
mm_121912.1	chr14	22013071	22013271	-	1	NA	NA	NA	-6541	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.010000	0.507463	
mm_22240.1	chr2	174463981	174464181	-	1	NA	NA	NA	20	NM_025983	67126	Mm.20841	NM_025983	ENSMUSG00000016252	Atp5e	2410043G19Rik|ATPE|AV000645	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	protein-coding	0.095000	0.681592	
mm_102712.1	chr11	67052491	67052691	-	1	NA	NA	NA	27	NM_025510	66358	Mm.22511	NM_025510	ENSMUSG00000020910	Adprm	2310004I24Rik|MDS006	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent	protein-coding	0.070000	0.616915	
mm_107941.1	chr12	71889447	71889647	+	1	NA	NA	NA	4	NM_001286452	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.035000	0.547264	
mm_103598.1	chr11	78386484	78386684	-	1	NA	NA	NA	24	NM_008238	15218	Mm.4496	NM_008238	ENSMUSG00000002057	Foxn1	D11Bhm185e|Fkh19|HFH-11|Hfh11|Whn|nu|nude	forkhead box N1	protein-coding	0.035000	0.616915	
mm_140059.1	chr17	74668178	74668378	+	1	NA	NA	NA	-49472	NM_152817	74196	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0.005000	0.502488	
mm_117999.1	chr13	100515037	100515237	-	1	NA	NA	NA	-22528	NM_022011	23894	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	0.010000	0.432836	-49(CTTTTTTAAAGG,-,0.00),-48(TTTTTTAAAGGT,+,0.00)
mm_17998.1	chr2	38190766	38190966	-	1	NA	NA	NA	96518	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.000000	0.333333	
mm_72268.1	chr8	75098697	75098897	+	1	NA	NA	NA	5179	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.020000	0.552239	
mm_113721.1	chr13	43765442	43765642	+	1	NA	NA	NA	-19570	NM_009856	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.020000	0.572139	
mm_109049.1	chr12	104338985	104339185	+	1	NA	NA	NA	599	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.005000	0.432836	
mm_133327.1	chr16	78302446	78302646	+	1	NA	NA	NA	875	NM_001276263	13052	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	0.045000	0.447761	
mm_91375.1	chr10	30200460	30200660	-	1	NA	NA	NA	-20	NM_001109747	66311	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding	0.100000	0.656716	
mm_118271.1	chr13	112601709	112601909	-	1	NA	NA	NA	-21147	NM_139299	218624	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	0.005000	0.353234	
mm_48050.1	chr5	136471945	136472145	-	1	NA	NA	NA	93936	NM_001291239	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.020000	0.477612	
mm_73162.1	chr8	95003298	95003498	+	1	NA	NA	NA	-14294	NM_173036	54672	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.025000	0.562189	
mm_152614.1	chr19	11966058	11966258	-	1	NA	NA	NA	314	NM_001033174	76303	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.145000	0.786070	
mm_62505.1	chr7	102065655	102065855	+	1	NA	NA	NA	264	NM_001286689	102443350	Mm.292904	NM_001286689	ENSMUSG00000070425	Xndc1	Xndr	Xrcc1 N-terminal domain containing 1	protein-coding	0.065000	0.542289	
mm_97543.1	chr11	78922231	78922431	+	1	NA	NA	NA	1544	NM_010927	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.010000	0.482587	
mm_123315.1	chr14	62464967	62465167	-	1	NA	NA	NA	-8778	NM_172810	239134	Mm.236557	NM_172810	ENSMUSG00000021933	Gucy1b2	B930025B03|GC-SB2	guanylate cyclase 1, soluble, beta 2	protein-coding	0.020000	0.592040	
mm_144564.1	chr18	31760519	31760719	+	1	NA	NA	NA	3	NM_001242430	225339	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0.055000	0.641791	
mm_44502.1	chr5	23844018	23844218	-	1	NA	NA	NA	27	NM_025394	66169	Mm.291868	NM_025394	ENSMUSG00000028998	Tomm7	1110020J08Rik|AW047273|Tom7	translocase of outer mitochondrial membrane 7 homolog (yeast)	protein-coding	0.095000	0.641791	
mm_138798.1	chr17	37534609	37534809	+	1	NA	NA	NA	4752	NM_001005485	545205	Mm.383371	NM_001005485	ENSMUSG00000090675	Olfr111	-	olfactory receptor 111	protein-coding	0.000000	0.383085	
mm_145359.1	chr18	56676555	56676755	+	1	NA	NA	NA	-31158	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.020000	0.562189	
mm_25852.1	chr3	129553360	129553560	+	1	NA	NA	NA	21074	NM_130450	170439	Mm.314113	NM_130450	ENSMUSG00000041220	Elovl6	C77826|FAE|LCE	ELOVL family member 6, elongation of long chain fatty acids (yeast)	protein-coding	0.025000	0.527363	
mm_83192.1	chr9	41014097	41014297	-	1	NA	NA	NA	-9569	NM_019465	54698	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	0.020000	0.487562	
mm_68419.1	chr7	109723750	109723950	-	1	NA	NA	NA	-79	NM_001040700	57355	Mm.358682	NM_020609	ENSMUSG00000031022	BC051019	AA571491|D7H11orf16|ICRFP703B1614Q5.5	cDNA sequence BC051019	protein-coding	0.010000	0.542289	
mm_133247.1	chr16	77124158	77124358	+	1	NA	NA	NA	110189	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.010000	0.407960	
mm_84026.1	chr9	57761824	57762024	-	1	NA	NA	NA	3936	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.010000	0.537313	
mm_121864.1	chr14	20733522	20733722	-	1	NA	NA	NA	940	NM_010811	17423	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0.010000	0.467662	
mm_126042.1	chr15	76904454	76904654	+	1	NA	NA	NA	483	NM_012053	26961	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0.085000	0.616915	
mm_53107.1	chr6	125071236	125071436	+	1	NA	NA	NA	59	NM_001163268	381810	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0.010000	0.557214	
mm_103455.1	chr11	76287237	76287437	-	1	NA	NA	NA	43601	NM_183263	67390	Mm.24886	NM_183263	ENSMUSG00000038046	Rnmtl1	4833420N02Rik|AI255153|HC90|Mrm3	RNA methyltransferase like 1	protein-coding	0.010000	0.527363	
mm_134901.1	chr16	30039251	30039451	-	1	NA	NA	NA	128	NR_045878	71528	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	0.005000	0.582090	-50(CCTCTAATGGGC,+,0.00)
mm_80813.1	chr9	96525245	96525445	+	1	NA	NA	NA	-46670	NM_001311135	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.030000	0.537313	
mm_125334.1	chr15	38691528	38691728	+	1	NA	NA	NA	29724	NM_025494	66335	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.005000	0.457711	
mm_57900.1	chr6	131388202	131388402	-	1	NA	NA	NA	148	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.190000	0.805970	
mm_1234.1	chr1	62792330	62792530	+	1	NA	NA	NA	2302	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.000000	0.402985	
mm_53006.1	chr6	123270695	123270895	+	1	NA	NA	NA	8688	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.005000	0.333333	
mm_100832.1	chr11	5444755	5444955	-	1	NA	NA	NA	-8	NM_001080924	407821	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0.145000	0.766169	
mm_139381.1	chr17	51879794	51879994	+	1	NA	NA	NA	-2833	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.015000	0.427861	
mm_17502.1	chr2	28915454	28915654	-	1	NA	NA	NA	867	NM_019446	54422	Mm.21390	NM_019446	ENSMUSG00000026805	Barhl1	Dres115|MBH2	BarH-like 1 (Drosophila)	protein-coding	0.050000	0.641791	
mm_94726.1	chr11	20647151	20647351	+	1	NA	NA	NA	15274	NM_001038625	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.025000	0.507463	
mm_47525.1	chr5	124152736	124152936	-	1	NA	NA	NA	34346	NM_001289472	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.015000	0.467662	
mm_127375.1	chr15	100810383	100810583	+	1	NA	NA	NA	29229	NM_001347102	59033	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0.020000	0.507463	
mm_60452.1	chr7	44477383	44477583	+	1	NA	NA	NA	-7034	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.393035	
mm_152398.1	chr19	10555643	10555843	-	1	NA	NA	NA	20	NM_001277861	68642	Mm.31236	NM_026798	ENSMUSG00000024667	Tmem216	1110017C22Rik|2810441K11Rik|4921533J23Rik|A930021F15Rik|AI482550	transmembrane protein 216	protein-coding	0.085000	0.666667	
mm_93796.1	chr10	120805503	120805703	-	1	NA	NA	NA	39871	NR_038003	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.015000	0.402985	
mm_102570.1	chr11	61579158	61579358	-	1	NA	NA	NA	429	NM_010148	13855	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0.090000	0.691542	
mm_132290.1	chr16	33206927	33207127	+	1	NA	NA	NA	21956	NM_176840	106326	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.005000	0.402985	
mm_74267.1	chr8	124898394	124898594	+	1	NA	NA	NA	608	NM_001111141	244666	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	0.095000	0.611940	
mm_59166.1	chr7	24399601	24399801	+	1	NA	NA	NA	73	NM_028047	71997	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.100000	0.646766	
mm_168993.1	chr12	99645416	99645616	+	1	NA	NA	NA	-17542	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.060000	0.532338	0(AACTTTAAATGG,-,0.00)
mm_361.1	chr1	33813567	33813767	+	1	NA	NA	NA	928	NM_133817	98403	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	0.030000	0.462687	
mm_7456.1	chr1	120270980	120271180	-	1	NA	NA	NA	2	NM_001085409	68428	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.015000	0.587065	
mm_6099.1	chr1	63730224	63730424	-	1	NA	NA	NA	-6	NM_029696	76668	Mm.30494	NM_029696	ENSMUSG00000025963	Mdh1b	1700124B08Rik|AV255588	malate dehydrogenase 1B, NAD (soluble)	protein-coding	0.060000	0.542289	
mm_15385.1	chr2	156613534	156613734	+	1	NA	NA	NA	-63	NM_146128	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.160000	0.850746	
mm_33741.1	chr4	134127470	134127670	+	1	NA	NA	NA	1183	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.015000	0.542289	
mm_81475.1	chr9	109931745	109931945	+	1	NA	NA	NA	71	NM_008633	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.120000	0.751244	
mm_172392.1	chr7	14086684	14086884	-	1	NA	NA	NA	36209	NM_001101586	629203	Mm.482066	NM_001101586	ENSMUSG00000074375	Sult2a3	EG629203|Gm6955	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 3	protein-coding	0.055000	0.631841	
mm_101317.1	chr11	22853099	22853299	-	1	NA	NA	NA	6536	NM_016888	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.015000	0.522388	
mm_108488.1	chr12	83671815	83672015	+	1	NA	NA	NA	-16648	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.015000	0.388060	
mm_80406.1	chr9	77636574	77636774	+	1	NA	NA	NA	-58	NM_172925	244923	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0.030000	0.552239	
mm_51341.1	chr6	72544330	72544530	+	1	NA	NA	NA	39	NM_007599	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.040000	0.587065	
mm_22616.1	chr3	14578697	14578897	+	1	NA	NA	NA	126	NM_007892	13559	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	0.150000	0.796020	
mm_149877.1	chr19	25236871	25237071	+	1	NA	NA	NA	-231	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.095000	0.686567	
mm_168127.1	chr10	23349785	23349985	-	1	NA	NA	NA	5	NM_001347372	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.055000	0.552239	
mm_149854.1	chr19	25081601	25081801	+	1	NA	NA	NA	82172	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.015000	0.492537	
mm_73727.1	chr8	113572583	113572783	+	1	NA	NA	NA	55401	NR_110476	78048	Mm.252797	NR_110476		4930571O06Rik	-	RIKEN cDNA 4930571O06 gene	ncRNA	0.065000	0.547264	
mm_126807.1	chr15	87631981	87632181	+	1	NA	NA	NA	6851	NM_134096	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.005000	0.358209	32(CCTTATATACTT,+,0.00),41(CTTTTAATATCC,+,0.00)
mm_150674.1	chr19	42052149	42052349	+	1	NA	NA	NA	21	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	0.010000	0.621891	
mm_135414.1	chr16	45148491	45148691	-	1	NA	NA	NA	10082	NM_028756	74102	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	0.010000	0.422886	
mm_172891.1	chr9	5555538	5555738	-	1	NA	NA	NA	210162	NM_009808	12364	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0.025000	0.457711	
mm_9256.1	chr1	171601785	171601985	-	1	NA	NA	NA	5449	NR_102726	17085	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	0.020000	0.537313	-44(CCATTTAAATAC,+,0.00)
mm_141975.1	chr17	35159076	35159276	-	1	NA	NA	NA	5701	NM_001199044	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.025000	0.587065	
mm_76487.1	chr8	85760211	85760411	-	1	NA	NA	NA	59406	NR_106189	102465898		NR_106189	ENSMUSG00000098388	Mir8109	Gm27495|mmu-mir-8109	microRNA 8109	ncRNA	0.000000	0.318408	
mm_142945.1	chr17	56074884	56075084	-	1	NA	NA	NA	5	NM_024432	66530	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0.110000	0.666667	
mm_163183.1	chr11	93885751	93885951	+	1	NA	NA	NA	-85	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.100000	0.646766	
mm_109137.1	chr12	106147786	106147986	+	1	NA	NA	NA	137623	NM_001029843	22367	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0.005000	0.492537	
mm_86392.1	chr9	123968304	123968504	-	1	NA	NA	NA	288	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.000000	0.393035	
mm_43752.1	chr5	140436169	140436369	+	1	NA	NA	NA	8930	NR_106005	102466792		NR_106005	ENSMUSG00000098319	Mir7038	Gm27955|mmu-mir-7038	microRNA 7038	ncRNA	0.020000	0.442786	
mm_46089.1	chr5	92346923	92347123	-	1	NA	NA	NA	1866	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.020000	0.502488	
mm_65169.1	chr7	19681254	19681454	-	1	NA	NA	NA	106	NM_007385	11425	Mm.477720	NM_007385	ENSMUSG00000074336	Apoc4	Acl|apo-CIV|apoC-IV	apolipoprotein C-IV	protein-coding	0.015000	0.592040	
mm_105029.1	chr11	100477000	100477200	-	1	NA	NA	NA	1380	NR_130343	102465671		NR_130343	ENSMUSG00000104854	Mir7116	mmu-mir-7116	microRNA 7116	ncRNA	0.010000	0.437811	58(CTATATATAAGC,-,0.00)
mm_27557.1	chr3	58525652	58525852	-	1	NA	NA	NA	-69	NM_001005509	229317	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	0.115000	0.721393	
mm_156719.1	chrX	159708503	159708703	+	1	NA	NA	NA	2	NR_110970	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.020000	0.527363	
mm_158285.1	chrX	112314314	112314514	-	1	NA	NA	NA	3062	NM_026565	68117	Mm.161014	NM_026565	ENSMUSG00000025525	Apool	6720473G16Rik|9430083G14Rik|E130106L15Rik	apolipoprotein O-like	protein-coding	0.005000	0.472637	
mm_157547.1	chrX	51450160	51450360	-	1	NA	NA	NA	230217	NM_001290468	50786	Mm.252561	NM_015819	ENSMUSG00000062184	Hs6st2	6OST2	heparan sulfate 6-O-sulfotransferase 2	protein-coding	0.005000	0.343284	
mm_159034.1	chr1	177248538	177248738	-	1	NA	NA	NA	129	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.010000	0.472637	
mm_104953.1	chr11	100140764	100140964	-	1	NA	NA	NA	2835	NM_001313963	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.015000	0.527363	
mm_124530.1	chr14	122372551	122372751	-	1	NA	NA	NA	78464	NR_033325	328479	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.005000	0.378109	
mm_139414.1	chr17	53354369	53354569	+	1	NA	NA	NA	108852	NM_172497	211482	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	0.015000	0.417910	
mm_35362.1	chr4	32375108	32375308	-	1	NA	NA	NA	-42227	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.010000	0.373134	
mm_131628.1	chr16	20123730	20123930	+	1	NA	NA	NA	-17233	NM_001033237	208146	Mm.390895	NM_001033237	ENSMUSG00000041215	Yeats2	BC042768|mKIAA1197	YEATS domain containing 2	protein-coding	0.005000	0.432836	
mm_164521.1	chr16	97948581	97948781	-	1	NA	NA	NA	13941	NM_001081685	114565	Mm.474489	NM_175428	ENSMUSG00000046962	Zbtb21	5430437K12Rik|B430213I24Rik|Zfp295|Znf295|mKIAA1227	zinc finger and BTB domain containing 21	protein-coding	0.000000	0.313433	
mm_53790.1	chr6	146642484	146642684	+	1	NA	NA	NA	5	NM_025315	108098	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	0.070000	0.597015	
mm_30512.1	chr3	158036498	158036698	-	1	NA	NA	NA	41	NM_001093752	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.095000	0.636816	
mm_44563.1	chr5	24623378	24623578	-	1	NA	NA	NA	-21476	NM_025891	66993	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.005000	0.616915	
mm_62551.1	chr7	102441760	102441960	+	1	NA	NA	NA	165	NM_009103	20133	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.105000	0.577114	
mm_5001.1	chr1	191928500	191928700	+	1	NA	NA	NA	-21073	NR_030669	98736	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	0.025000	0.527363	
mm_48474.1	chr5	140995478	140995678	-	1	NA	NA	NA	5018	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.005000	0.432836	
mm_86985.1	chr10	25472980	25473180	+	1	NA	NA	NA	63192	NM_001195596	100504474	Mm.46323	NM_001195596	ENSMUSG00000096546	Smlr1	2010003K15Rik	small leucine-rich protein 1	protein-coding	0.025000	0.502488	
mm_1677.1	chr1	74816953	74817153	+	1	NA	NA	NA	25034	NM_009518	22409	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0.095000	0.671642	10(TGCCTTTTAAGC,-,0.00),12(CCTTTTAAGCTG,+,0.00)
mm_104985.1	chr11	100265801	100266001	-	1	NA	NA	NA	3970	NM_212483	68239	Mm.158190	NM_212483	ENSMUSG00000053654	Krt42	2410039E07Rik|K17n|Ka22|ecat6	keratin 42	protein-coding	0.030000	0.532338	
mm_125951.1	chr15	76248882	76249082	+	1	NA	NA	NA	791	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.035000	0.587065	
mm_84148.1	chr9	59469016	59469216	-	1	NA	NA	NA	12625	NR_045640	100504377	Mm.446631	NR_045640		Gm20199	-	predicted gene, 20199	ncRNA	0.000000	0.333333	
mm_125313.1	chr15	38087886	38088086	+	1	NA	NA	NA	-9132	NM_001081359	70790	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.005000	0.447761	
mm_15633.1	chr2	162987454	162987654	+	1	NA	NA	NA	73	NM_013731	27219	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	0.015000	0.562189	
mm_50580.1	chr6	49055523	49055723	+	1	NA	NA	NA	-18172	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.015000	0.482587	-12(TGCTTTAAAGAC,-,0.00),-11(GCTTTAAAGACC,+,0.00),-10(CTTTAAAGACCC,+,0.00)
mm_40183.1	chr5	36203955	36204155	+	1	NA	NA	NA	34	NM_175249	76943	Mm.44242	NM_175249	ENSMUSG00000043430	Psapl1	2310020A21Rik	prosaposin-like 1	protein-coding	0.020000	0.616915	
mm_61417.1	chr7	73608856	73609056	+	1	NA	NA	NA	-50561	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.025000	0.378109	
mm_91570.1	chr10	40098796	40098996	-	1	NA	NA	NA	43358	NM_028247	72472	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.015000	0.417910	12(AGCTATAAAAAC,-,0.00),70(TGCTTTTAAAGA,-,0.00),71(GCTTTTAAAGAT,+,0.00)
mm_77765.1	chr9	3002872	3003072	+	1	NA	NA	NA	35771	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.343284	
mm_27116.1	chr3	31079544	31079744	-	1	NA	NA	NA	-15414	NM_011386	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.005000	0.507463	
mm_90276.1	chr10	122802111	122802311	+	1	NA	NA	NA	122896	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.045000	0.547264	
mm_145105.1	chr18	44104428	44104628	+	1	NA	NA	NA	5	NM_030061	78242	Mm.99782	NM_030061	ENSMUSG00000061144	Spink12	9230117E20Rik	serine peptidase inhibitor, Kazal type 12	protein-coding	0.005000	0.333333	
mm_38528.1	chr4	141538494	141538694	-	1	NA	NA	NA	3	NM_001347235	56381	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	SPEN homolog, transcriptional regulator (Drosophila)	protein-coding	0.210000	0.855721	
mm_133052.1	chr16	57572184	57572384	+	1	NA	NA	NA	23042	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.000000	0.437811	
mm_111349.1	chr12	86947232	86947432	-	1	NA	NA	NA	-11	NM_173735	217732	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.090000	0.666667	
mm_20425.1	chr2	129304670	129304870	-	1	NA	NA	NA	5202	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.005000	0.422886	
mm_18692.1	chr2	71537799	71537999	-	1	NA	NA	NA	-8	NR_002854	111970	Mm.4543	NR_002854		Dlx1as	Dix1as|Dlx1os	distal-less homeobox 1, antisense	ncRNA	0.025000	0.447761	
mm_160804.1	chr11	6605920	6606120	-	1	NA	NA	NA	34	NM_001081652	192950	Mm.337771	NM_001081652	ENSMUSG00000041073	Nacad	D230024G13Rik|mKIAA0363	NAC alpha domain containing	protein-coding	0.015000	0.537313	
mm_89157.1	chr10	86032963	86033163	+	1	NA	NA	NA	10909	NM_001347151	69754	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	0.005000	0.412935	-35(GTCTTTAAAAGG,-,0.00),-34(TCTTTAAAAGGT,+,0.00)
mm_45904.1	chr5	88739673	88739873	-	1	NA	NA	NA	18902	NM_026735	68473	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	0.030000	0.417910	
mm_84641.1	chr9	71168593	71168793	-	1	NA	NA	NA	-83	NR_110517	102635087	Mm.444536	NR_110517	ENSMUSG00000111429	Gm32511	-	predicted gene, 32511	ncRNA	0.030000	0.537313	
mm_65949.1	chr7	30420257	30420457	-	1	NA	NA	NA	-503	NM_011827	23900	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	0.015000	0.522388	
mm_148420.1	chr19	3936273	3936473	+	1	NA	NA	NA	1187	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.040000	0.552239	
mm_80149.1	chr9	70927029	70927229	+	1	NA	NA	NA	7679	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.005000	0.477612	
mm_50749.1	chr6	52903710	52903910	+	1	NA	NA	NA	5810	NM_001168277	231986	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.005000	0.472637	
mm_31115.1	chr4	42950307	42950507	+	1	NA	NA	NA	-2687	NM_019874	56323	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.040000	0.621891	
mm_154035.1	chr19	53528802	53529002	-	1	NA	NA	NA	-416	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.105000	0.681592	
mm_55032.1	chr6	48951419	48951619	-	1	NA	NA	NA	21623	NM_001081273	69761	Mm.333053	NM_001081273	ENSMUSG00000029813	1600015I10Rik	AI429442|Doxl1	RIKEN cDNA 1600015I10 gene	protein-coding	0.005000	0.477612	
mm_68682.1	chr7	118995116	118995316	-	1	NA	NA	NA	-5	NM_001195774	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.120000	0.781095	
mm_89345.1	chr10	88090973	88091173	+	1	NA	NA	NA	1	NM_029971	110312	Mm.391436	NM_029971	ENSMUSG00000035383	Pmch	A230109K23Rik	pro-melanin-concentrating hormone	protein-coding	0.005000	0.407960	
mm_169297.1	chr14	100314316	100314516	+	1	NA	NA	NA	-164620	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.020000	0.562189	
mm_74923.1	chr8	25596919	25597119	-	1	NA	NA	NA	468	NM_173012	270035	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	0.060000	0.542289	
mm_172019.1	chr6	114765496	114765696	-	1	NA	NA	NA	122499	NM_001253717	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.035000	0.507463	
mm_128821.1	chr15	67128825	67129025	-	1	NA	NA	NA	47957	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.005000	0.597015	
mm_4526.1	chr1	175632027	175632227	+	1	NA	NA	NA	-66	NM_133809	98256	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	0.015000	0.452736	
mm_171287.1	chr3	90079565	90079765	+	1	NA	NA	NA	144	NM_001293749	59069	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0.095000	0.636816	
mm_149617.1	chr19	16436102	16436302	+	1	NA	NA	NA	535	NM_008137	14675	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.035000	0.572139	
mm_3872.1	chr1	160989566	160989766	+	1	NA	NA	NA	11060	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.030000	0.522388	
mm_113848.1	chr13	47201541	47201741	+	1	NA	NA	NA	7638	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.020000	0.447761	
mm_129037.1	chr15	74996411	74996611	-	1	NA	NA	NA	1520	NM_001271417	110454	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	0.000000	0.492537	74(GCCTATATAAAG,-,0.00)
mm_56584.1	chr6	106794527	106794727	-	1	NA	NA	NA	5460	NM_021449	58799	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.020000	0.497512	
mm_136727.1	chr17	8244945	8245145	+	1	NA	NA	NA	-13	NM_001190338	12458	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	0.005000	0.432836	-38(GCTTTTAAATAG,+,0.00)
mm_8795.1	chr1	161788378	161788578	-	1	NA	NA	NA	17	NM_001205243	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.025000	0.462687	76(AACTTTATAAAG,-,0.00),78(CTTTATAAAGAA,+,0.00)
mm_1409.1	chr1	67154191	67154391	+	1	NA	NA	NA	31264	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.308458	
mm_90284.1	chr10	122986481	122986681	+	1	NA	NA	NA	-857	NR_029527	387251		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.080000	0.532338	65(GTTTCTTAAAGG,-,0.00)
mm_146885.1	chr18	25753392	25753592	-	1	NA	NA	NA	491	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.070000	0.606965	
mm_74083.1	chr8	122546392	122546592	+	1	NA	NA	NA	4837	NM_001037298	234839	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	0.015000	0.592040	
mm_99208.1	chr11	101022975	101023175	+	1	NA	NA	NA	-7265	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.005000	0.487562	
mm_96068.1	chr11	59750073	59750273	+	1	NA	NA	NA	-10019	NR_045476	69320	Mm.443242	NR_045476	ENSMUSG00000086330	1700007J10Rik	4930573L17Rik	RIKEN cDNA 1700007J10 gene	ncRNA	0.000000	0.437811	
mm_34304.1	chr4	141757271	141757471	+	1	NA	NA	NA	10696	NM_001081408	75986	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	0.005000	0.582090	
mm_83013.1	chr9	36779946	36780146	-	1	NA	NA	NA	-12468	NM_008408	16430	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	0.005000	0.547264	
mm_36408.1	chr4	78043716	78043916	-	1	NA	NA	NA	168079	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.005000	0.333333	
mm_69274.1	chr7	127946395	127946595	-	1	NA	NA	NA	230	NM_001319147	77613	Mm.334253	NM_001081374	ENSMUSG00000070371	Prss36	C330007D15Rik	protease, serine 36	protein-coding	0.010000	0.572139	
mm_39429.1	chr5	16553464	16553664	+	1	NA	NA	NA	69	NM_010427	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.025000	0.517413	
mm_51295.1	chr6	72306686	72306886	+	1	NA	NA	NA	2176	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.005000	0.572139	
mm_135360.1	chr16	43979687	43979887	-	1	NA	NA	NA	-737	NM_001007460	332175	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	0.185000	0.835821	
mm_8716.1	chr1	159030864	159031064	-	1	NA	NA	NA	-73526	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding	0.010000	0.437811	-31(GGGCTTTAAAGC,-,0.00),-29(GCTTTAAAGCTG,+,0.00)
mm_78904.1	chr9	44772858	44773058	+	1	NA	NA	NA	-51	NM_023831	76568	Mm.278597	NM_023831	ENSMUSG00000002031	Ift46	1500035H01Rik|AA408110|AI663846|R75047|c11orf2	intraflagellar transport 46	protein-coding	0.105000	0.611940	
mm_34982.1	chr4	156016702	156016902	+	1	NA	NA	NA	3107	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.010000	0.487562	41(CTTTTAATACAG,+,0.00)
mm_170469.1	chr1	90623072	90623272	-	1	NA	NA	NA	19747	NM_133805	108679	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	0.050000	0.502488	-33(CTTTAAATACCC,+,0.00)
mm_17591.1	chr2	30594809	30595009	-	1	NA	NA	NA	-135	NM_030137	78617	Mm.40413	NM_030137	ENSMUSG00000047363	Cstad	9530039B02Rik	CSA-conditional, T cell activation-dependent protein	protein-coding	0.025000	0.522388	
mm_37542.1	chr4	125122451	125122651	-	1	NA	NA	NA	5330	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.010000	0.577114	
mm_93760.1	chr10	120193288	120193488	-	1	NA	NA	NA	8149	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.030000	0.502488	
mm_155332.1	chrX	66025391	66025591	+	1	NA	NA	NA	-623827	NM_001161431	245450	Mm.336081	NM_198863	ENSMUSG00000036790	Slitrk2	A930040J07	SLIT and NTRK-like family, member 2	protein-coding	0.000000	0.437811	
mm_44548.1	chr5	24598544	24598744	-	1	NA	NA	NA	3358	NM_025891	66993	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.110000	0.786070	
mm_24715.1	chr3	95228742	95228942	+	1	NA	NA	NA	-101	NM_001038708	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.130000	0.791045	
mm_3131.1	chr1	134987692	134987892	+	1	NA	NA	NA	25227	NM_001278115	67196	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	0.105000	0.721393	
mm_110713.1	chr12	69402745	69402945	-	1	NA	NA	NA	30695	NM_007481	11845	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.035000	0.457711	-42(GCCCCTAAAAAG,-,0.00)
mm_24737.1	chr3	95283179	95283379	+	1	NA	NA	NA	344	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.060000	0.572139	
mm_151456.1	chr19	58119727	58119927	+	1	NA	NA	NA	68660	NR_049196	100885835		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0.035000	0.497512	
mm_84152.1	chr9	59486486	59486686	-	1	NA	NA	NA	-212	NM_019927	23806	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	0.155000	0.771144	
mm_159984.1	chr6	113697797	113697997	+	1	NA	NA	NA	847	NM_001033463	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.105000	0.701493	
mm_38620.1	chr4	142014995	142015195	-	1	NA	NA	NA	-2803	NR_131014	78917	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.115000	0.706468	
mm_116412.1	chr13	41486915	41487115	-	1	NA	NA	NA	345	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.010000	0.497512	
mm_1179.1	chr1	61638849	61639049	+	1	NA	NA	NA	125	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0.125000	0.766169	
mm_166380.1	chr5	130224066	130224266	+	1	NA	NA	NA	1831	NM_027854	71667	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0.005000	0.512438	
mm_149485.1	chr19	11810543	11810743	+	1	NA	NA	NA	8760	NM_001286543	20908	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.000000	0.452736	
mm_28361.1	chr3	89870106	89870306	-	1	NA	NA	NA	38836	NM_172530	214547	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.015000	0.432836	-76(GTTTTTAGAGAA,+,0.00)
mm_165856.1	chr4	19122538	19122738	+	1	NA	NA	NA	-158212	NM_013927	30952	Mm.445778	NM_013927	ENSMUSG00000056494	Cngb3	CCNC2|CNG6|Cngbeta2	cyclic nucleotide gated channel beta 3	protein-coding	0.005000	0.492537	
mm_1803.1	chr1	80757599	80757799	+	1	NA	NA	NA	854	NM_175291	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.030000	0.497512	
mm_44904.1	chr5	35652566	35652766	-	1	NA	NA	NA	27114	NM_001042615	78558	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.015000	0.592040	
mm_81092.1	chr9	106368517	106368717	+	1	NA	NA	NA	-15	NM_153459	235584	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.180000	0.830846	-91(GCCTTTAAGCCC,+,0.00)
mm_32311.1	chr4	103313742	103313942	+	1	NA	NA	NA	-4	NM_025909	67013	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	0.100000	0.711443	
mm_9136.1	chr1	170857404	170857604	-	1	NA	NA	NA	10267	NM_001081304	226641	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.010000	0.527363	
mm_14892.1	chr2	149283505	149283705	+	1	NA	NA	NA	-121644	NM_021405	58214	Mm.117117	NM_021405	ENSMUSG00000033156	Cst10	DD72	cystatin 10 (chondrocytes)	protein-coding	0.020000	0.437811	-34(TTGTATAAAAAC,-,0.00)
mm_133453.1	chr16	88828893	88829093	+	1	NA	NA	NA	-16	NM_013713	26560	Mm.86430	NM_013713	ENSMUSG00000022931	Krtap15	Krtap15-1|Pmg-2|Pmg2	keratin associated protein 15	protein-coding	0.010000	0.442786	-33(TGGTATATAAGG,-,0.00)
mm_4042.1	chr1	165774518	165774718	+	1	NA	NA	NA	10838	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.010000	0.407960	
mm_147238.1	chr18	38284300	38284500	-	1	NA	NA	NA	1	NM_017378	53601	Mm.12862	NM_017378	ENSMUSG00000024440	Pcdh12	Pcdh14|VE-cad-2	protocadherin 12	protein-coding	0.010000	0.477612	
mm_62595.1	chr7	105648105	105648305	+	1	NA	NA	NA	7665	NM_019502	14356	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0.005000	0.417910	
mm_36335.1	chr4	72198214	72198414	-	1	NA	NA	NA	2579	NM_011599	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.015000	0.472637	
mm_55269.1	chr6	53820701	53820901	-	1	NA	NA	NA	24	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.095000	0.691542	
mm_4420.1	chr1	172500177	172500377	+	1	NA	NA	NA	31	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.075000	0.691542	-95(GCCTTTAAACCC,+,0.00)
mm_99615.1	chr11	104607694	104607894	+	1	NA	NA	NA	-206	NM_016780	16416	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding	0.050000	0.582090	-23(TTTTTTAAACCG,+,0.00)
mm_136208.1	chr16	89833114	89833314	-	1	NA	NA	NA	-14862	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.020000	0.522388	
mm_154102.1	chr19	57044985	57045185	-	1	NA	NA	NA	-36510	NM_001177797	226250	Mm.226284	NM_146102	ENSMUSG00000025083	Afap1l2	AU041783|C86904|mKIAA1914	actin filament associated protein 1-like 2	protein-coding	0.035000	0.562189	
mm_85802.1	chr9	110117440	110117640	-	1	NA	NA	NA	76	NM_001252682	72831	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	0.095000	0.696517	
mm_148398.1	chr19	3769008	3769208	+	1	NA	NA	NA	1687	NM_001167885	225888	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0.065000	0.606965	
mm_35274.1	chr4	19920672	19920872	-	1	NA	NA	NA	1794	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.000000	0.338308	71(GTTTATATAGTG,+,0.00)
mm_67598.1	chr7	83735331	83735531	-	1	NA	NA	NA	59	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.015000	0.532338	
mm_20958.1	chr2	151744074	151744274	-	1	NA	NA	NA	-2864	NM_001305244	228769	Mm.146984	NM_144889	ENSMUSG00000032869	Psmf1	AW048666|BC012260|PI31	proteasome (prosome, macropain) inhibitor subunit 1	protein-coding	0.005000	0.552239	
mm_89207.1	chr10	86696699	86696899	+	1	NA	NA	NA	8645	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.005000	0.258706	
mm_130053.1	chr15	89169516	89169716	-	1	NA	NA	NA	4335	NM_001159521	140570	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.030000	0.587065	
mm_99877.1	chr11	109425571	109425771	+	1	NA	NA	NA	-275	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.090000	0.611940	
mm_34917.1	chr4	155728247	155728447	+	1	NA	NA	NA	-6457	NM_001101506	381582	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	0.015000	0.502488	
mm_97462.1	chr11	78261660	78261860	+	1	NA	NA	NA	6	NM_001002004	72503	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0.165000	0.771144	
mm_49665.1	chr6	31220315	31220515	+	1	NA	NA	NA	64	NR_040261	73652	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.060000	0.681592	
mm_125119.1	chr15	30172443	30172643	+	1	NA	NA	NA	-50	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.140000	0.721393	
mm_143913.1	chr17	85614707	85614907	-	1	NA	NA	NA	3589	NR_038084	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.035000	0.552239	
mm_101968.1	chr11	50308779	50308979	-	1	NA	NA	NA	-16543	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.005000	0.417910	
mm_151124.1	chr19	47865725	47865925	+	1	NA	NA	NA	31	NM_026619	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.100000	0.671642	
mm_39147.1	chr4	155361295	155361495	-	1	NA	NA	NA	33	NM_008860	18762	Mm.28561	NM_008860	ENSMUSG00000029053	Prkcz	AI098070|C80388|Pkcz|R74924|aPKCzeta|nPKC-zeta|zetaPKC	protein kinase C, zeta	protein-coding	0.125000	0.726368	
mm_92086.1	chr10	62792167	62792367	-	1	NA	NA	NA	101	NM_026201	67500	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	0.110000	0.646766	
mm_30376.1	chr3	152210194	152210394	-	1	NA	NA	NA	-164	NM_057172	51886	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	0.115000	0.686567	
mm_91277.1	chr10	24692298	24692498	-	1	NA	NA	NA	19761	NM_001308327	18605	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	0.010000	0.462687	
mm_53438.1	chr6	134152176	134152376	+	1	NA	NA	NA	116576	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.010000	0.432836	
mm_25322.1	chr3	106547633	106547833	+	1	NA	NA	NA	-65	NM_001286986	67171	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0.080000	0.611940	
mm_20084.1	chr2	120731105	120731305	-	1	NA	NA	NA	312	NM_026891	68968	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	0.115000	0.696517	
mm_59099.1	chr7	19696948	19697148	+	1	NA	NA	NA	1350	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.040000	0.597015	
mm_61025.1	chr7	49517268	49517468	+	1	NA	NA	NA	119467	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.010000	0.497512	-34(AGCTATAAAAAG,-,0.00)
mm_133736.1	chr16	93883866	93884066	+	1	NA	NA	NA	65	NM_028083	110749	Mm.274222	NM_028083	ENSMUSG00000022945	Chaf1b	2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7	chromatin assembly factor 1, subunit B (p60)	protein-coding	0.115000	0.716418	
mm_8582.1	chr1	155947617	155947817	-	1	NA	NA	NA	25538	NM_001039184	74081	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	0.005000	0.343284	71(CCTTTAATAACA,+,0.00)
mm_66457.1	chr7	44869749	44869949	-	1	NA	NA	NA	-61	NM_133949	84113	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0.035000	0.582090	
mm_145555.1	chr18	60811335	60811535	+	1	NA	NA	NA	-641	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.060000	0.577114	
mm_151499.1	chr19	58728046	58728246	+	1	NA	NA	NA	-741	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.010000	0.507463	
mm_64384.1	chr7	142474968	142475168	+	1	NA	NA	NA	-1945	NM_001271523	16985	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.040000	0.721393	
mm_107972.1	chr12	72844383	72844583	+	1	NA	NA	NA	73282	NM_029444	75801	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	0.025000	0.542289	
mm_90700.1	chr10	130332882	130333082	+	1	NA	NA	NA	10130	NM_183264	67596	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	0.015000	0.472637	
mm_14476.1	chr2	131499167	131499367	+	1	NA	NA	NA	7405	NM_001177838	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.010000	0.432836	
mm_116053.1	chr13	27437028	27437228	-	1	NA	NA	NA	1560	NM_001271379	19112	Mm.142728	NM_011167	ENSMUSG00000021345	Prl8a6	Ghd13|PLP-C1|PLP-Ca|PLP-calpha|Prlpc|Prlpc1	prolactin family 8, subfamily a, member 6	protein-coding	0.000000	0.442786	
mm_84556.1	chr9	67710808	67711008	-	1	NA	NA	NA	16872	NR_106100	102466824		NR_106100	ENSMUSG00000098937	Mir7241	Gm27918|mmu-mir-7241	microRNA 7241	ncRNA	0.005000	0.368159	
mm_41916.1	chr5	105599471	105599671	+	1	NA	NA	NA	80100	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.010000	0.462687	
mm_101850.1	chr11	48838452	48838652	-	1	NA	NA	NA	547	NM_001347436	94089	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.040000	0.567164	
mm_126324.1	chr15	79739503	79739703	+	1	NA	NA	NA	2933	NM_194342	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.010000	0.547264	
mm_13386.1	chr2	103969431	103969631	+	1	NA	NA	NA	-26	NM_001142336	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.060000	0.651741	
mm_145002.1	chr18	38418813	38419013	+	1	NA	NA	NA	-62	NM_022996	65113	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.165000	0.771144	
mm_16623.1	chr2	5675964	5676164	-	1	NA	NA	NA	-18	NM_001290376	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.020000	0.502488	
mm_38598.1	chr4	141846185	141846385	-	1	NA	NA	NA	74	NM_001033875	76701	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	0.020000	0.582090	-34(GCCTATAAATGC,-,0.00)
mm_110243.1	chr12	31265012	31265212	-	1	NA	NA	NA	-182	NM_008482	16777	Mm.172674	NM_008482	ENSMUSG00000002900	Lamb1	C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1	laminin B1	protein-coding	0.055000	0.641791	
mm_99495.1	chr11	102881131	102881331	+	1	NA	NA	NA	-13	NM_028492	73293	Mm.67659	NM_028492	ENSMUSG00000020930	Ccdc103	1700039D13Rik	coiled-coil domain containing 103	protein-coding	0.055000	0.587065	
mm_154014.1	chr19	53195134	53195334	-	1	NA	NA	NA	51237	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.015000	0.457711	86(CACTTTATAGGC,-,0.00)
mm_144782.1	chr18	35830872	35831072	+	1	NA	NA	NA	1154	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.055000	0.552239	
mm_20980.1	chr2	151974059	151974259	-	1	NA	NA	NA	-178	NM_028666	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.060000	0.582090	
mm_99686.1	chr11	106036837	106037037	+	1	NA	NA	NA	65	NM_027946	71833	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.120000	0.711443	
mm_44994.1	chr5	38159374	38159574	-	1	NA	NA	NA	-7	NM_010942	18196	Mm.7414	NM_010942	ENSMUSG00000029126	Nsg1	Neep21|m234|p21	neuron specific gene family member 1	protein-coding	0.155000	0.761194	
mm_117464.1	chr13	75943630	75943830	-	1	NA	NA	NA	94	NM_028493	73296	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	0.175000	0.815920	
mm_166478.1	chr5	145042881	145043081	+	1	NA	NA	NA	-9	NM_027069	69396	Mm.45463	NM_027069	ENSMUSG00000029620	1700018F24Rik	AV045857	RIKEN cDNA 1700018F24 gene	protein-coding	0.010000	0.497512	
mm_88742.1	chr10	80280852	80281052	+	1	NA	NA	NA	2788	NR_105876	102466207		NR_105876	ENSMUSG00000098672	Mir6911	Gm27822|mmu-mir-6911	microRNA 6911	ncRNA	0.035000	0.437811	
mm_31019.1	chr4	40722994	40723194	+	1	NA	NA	NA	164	NM_001164672	15502	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0.080000	0.691542	
mm_135770.1	chr16	56831681	56831881	-	1	NA	NA	NA	-35923	NM_172825	239853	Mm.258979	NM_172825	ENSMUSG00000022755	Adgrg7	9130020O16Rik|Gpr128	adhesion G protein-coupled receptor G7	protein-coding	0.020000	0.447761	
mm_124922.1	chr15	12122759	12122959	+	1	NA	NA	NA	5008	NM_011767	22763	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.005000	0.333333	
mm_151868.1	chr19	5797749	5797949	-	1	NA	NA	NA	-1868	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.010000	0.507463	-68(GGGTTTAAAGAG,-,0.00),-7(TTGCATATAAGC,-,0.00)
mm_157967.1	chrX	90745134	90745334	-	1	NA	NA	NA	-146908	NM_001101450	212952	Mm.477436	NM_001101450	ENSMUSG00000091497	Gm44	-	predicted gene 44	protein-coding	0.025000	0.532338	
mm_78947.1	chr9	45138485	45138685	+	1	NA	NA	NA	-457	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.065000	0.611940	
mm_131863.1	chr16	23112168	23112368	+	1	NA	NA	NA	1498	NR_034048	100217420	Mm.260084	NR_034048	ENSMUSG00000087935	Snora81	MBI-61	small nucleolar RNA, H/ACA box 81	snoRNA	0.010000	0.338308	
mm_1144.1	chr1	60746297	60746497	+	1	NA	NA	NA	9	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.005000	0.522388	
mm_27972.1	chr3	80802511	80802711	-	1	NA	NA	NA	180	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.030000	0.547264	
mm_73334.1	chr8	105304000	105304200	+	1	NA	NA	NA	-1501	NM_172760	234683	Mm.237966	NM_172760	ENSMUSG00000014791	Elmo3	9930107J06|BC058752|CED-12|Ced12	engulfment and cell motility 3	protein-coding	0.020000	0.497512	
mm_65248.1	chr7	19861124	19861324	-	1	NA	NA	NA	75	NM_001033419	330483	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0.030000	0.557214	
mm_1197.1	chr1	62706238	62706438	+	1	NA	NA	NA	3021	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.065000	0.597015	
mm_27312.1	chr3	50366540	50366740	-	1	NA	NA	NA	76973	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.308458	
mm_118673.1	chr14	22022608	22022808	+	1	NA	NA	NA	2996	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.010000	0.462687	
mm_45404.1	chr5	66214445	66214645	-	1	NA	NA	NA	-23210	NR_040695	73639	Mm.48851	NR_040695	ENSMUSG00000107014	1700126H18Rik	-	RIKEN cDNA 1700126H18 gene	ncRNA	0.015000	0.507463	-34(CACTATAAAAGG,-,0.00)
mm_2172.1	chr1	88306634	88306834	+	1	NA	NA	NA	22	NM_134252	171382	Mm.218753	NM_134252	ENSMUSG00000036251	Trpm8	CMR1|LTRPC6|LTrpC-6|TRPP8|Trp-p8	transient receptor potential cation channel, subfamily M, member 8	protein-coding	0.005000	0.507463	11(GGCTCTTTGAGG,-,0.00)
mm_114626.1	chr13	76099780	76099980	+	1	NA	NA	NA	1146	NM_001081352	218343	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	mKIAA0372	tetratricopeptide repeat domain 37	protein-coding	0.005000	0.323383	
mm_50280.1	chr6	47044953	47045153	+	1	NA	NA	NA	-199343	NM_025771	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.060000	0.631841	
mm_80207.1	chr9	72438513	72438713	+	1	NA	NA	NA	84	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.075000	0.616915	
mm_55525.1	chr6	70709806	70710006	-	1	NA	NA	NA	82269	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.482587	
mm_150050.1	chr19	29380429	29380629	+	1	NA	NA	NA	13091	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.040000	0.542289	
mm_123089.1	chr14	55758290	55758490	-	1	NA	NA	NA	34	NM_009894	12684	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	0.010000	0.522388	
mm_145155.1	chr18	46515821	46516021	+	1	NA	NA	NA	10050	NM_173423	240263	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.015000	0.368159	
mm_26757.1	chr3	8666738	8666938	-	1	NA	NA	NA	200	NM_010423	15213	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.095000	0.636816	
mm_10437.1	chr2	14174457	14174657	+	1	NA	NA	NA	33	NM_001081310	625286	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	0.005000	0.457711	-33(GTGTTTATATGC,-,0.00)
mm_84822.1	chr9	77733186	77733386	-	1	NA	NA	NA	-21249	NM_010295	14629	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.015000	0.522388	
mm_78755.1	chr9	42673890	42674090	+	1	NA	NA	NA	-201764	NM_173038	272589	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0.015000	0.532338	
mm_35266.1	chr4	19900411	19900611	-	1	NA	NA	NA	22055	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.000000	0.368159	-60(GTTTTTATAGTT,+,0.00)
mm_169043.1	chr13	14951002	14951202	+	1	NA	NA	NA	320844	NM_134067	105351	Mm.41450	NM_134067	ENSMUSG00000039182	AW209491	-	expressed sequence AW209491	protein-coding	0.035000	0.477612	
mm_130737.1	chr15	101253631	101253831	-	1	NA	NA	NA	-13115	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.015000	0.517413	
mm_164956.1	chr19	5613953	5614153	-	1	NA	NA	NA	-3959	NM_178637	81601	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	0.005000	0.482587	
mm_169908.1	chr16	54686733	54686933	+	1	NA	NA	NA	596404	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0.000000	0.437811	
mm_60111.1	chr7	35449040	35449240	+	1	NA	NA	NA	-39	NM_021291	30962	Mm.45874	NM_021291	ENSMUSG00000030492	Slc7a9	CSNU3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	protein-coding	0.020000	0.557214	
mm_56340.1	chr6	92856929	92857129	-	1	NA	NA	NA	44412	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	0.015000	0.393035	
mm_117005.1	chr13	57884284	57884484	-	1	NA	NA	NA	23948	NM_009262	20745	Mm.379020	NM_009262	ENSMUSG00000056222	Spock1	Spock|Ticn1|testican	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1	protein-coding	0.000000	0.497512	
mm_107407.1	chr12	33429527	33429727	+	1	NA	NA	NA	3	NM_172253	28071	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	0.085000	0.641791	
mm_84239.1	chr9	62282061	62282261	-	1	NA	NA	NA	18	NM_025721	66712	Mm.263615	NM_025721	ENSMUSG00000046846	Spesp1	4921508E09Rik|AI428149	sperm equatorial segment protein 1	protein-coding	0.090000	0.671642	
mm_160660.1	chr9	119551977	119552177	-	1	NA	NA	NA	10601	NM_001253860	20271	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding	0.020000	0.517413	
mm_2325.1	chr1	92439618	92439818	+	1	NA	NA	NA	24824	NR_105865	102465542		NR_105865	ENSMUSG00000098288	Mir6900	Gm27708|mmu-mir-6900	microRNA 6900	ncRNA	0.010000	0.427861	
mm_47073.1	chr5	116591378	116591578	-	1	NA	NA	NA	339	NM_026886	68955	Mm.146779	NM_026886	ENSMUSG00000063919	Srrm4	1500001A10Rik|B230202K19Rik|bv|mKIAA1853|nSR100	serine/arginine repetitive matrix 4	protein-coding	0.070000	0.621891	
mm_56872.1	chr6	118658645	118658845	-	1	NA	NA	NA	-96489	NM_001081112	232339	Mm.276116	NM_001081112	ENSMUSG00000007827	Ankrd26	5730521P14Rik|BC008111|mKIAA1074	ankyrin repeat domain 26	protein-coding	0.000000	0.472637	
mm_10069.1	chr1	193588545	193588745	-	1	NA	NA	NA	-81115	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.010000	0.497512	
mm_77236.1	chr8	115704849	115705049	-	1	NA	NA	NA	1945	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.010000	0.417910	
mm_131947.1	chr16	24393396	24393596	+	1	NA	NA	NA	146	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.080000	0.686567	
mm_15834.1	chr2	164685016	164685216	+	1	NA	NA	NA	9	NM_001012704	408190	Mm.376205	NM_001012704	ENSMUSG00000067704	Wfdc13	Wfdc13l1	WAP four-disulfide core domain 13	protein-coding	0.015000	0.552239	
mm_107436.1	chr12	36157028	36157228	+	1	NA	NA	NA	4	NM_146033	217473	Mm.130422	NM_146033	ENSMUSG00000036188	Ankmy2	AI035571|ZMYND20	ankyrin repeat and MYND domain containing 2	protein-coding	0.070000	0.636816	
mm_135014.1	chr16	32487080	32487280	-	1	NA	NA	NA	699	NM_145932	106407	Mm.476915	NM_145932	ENSMUSG00000035699	Slc51a	AV001382|AW261577|D630035O19Rik|OSTalpha|Osta	solute carrier family 51, alpha subunit	protein-coding	0.015000	0.492537	
mm_10536.1	chr2	16431644	16431844	+	1	NA	NA	NA	75440	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.000000	0.398010	
mm_82031.1	chr9	121938013	121938213	+	1	NA	NA	NA	838	NR_033553	69430	Mm.482910	NR_033553	ENSMUSG00000043773	1700048O20Rik	1700022O21Rik	RIKEN cDNA 1700048O20 gene	ncRNA	0.040000	0.532338	
mm_161153.1	chr13	23763560	23763760	+	1	NA	NA	NA	-8	NM_030609	80838	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	0.055000	0.557214	-28(CTCTATAAATAC,-,0.00)
mm_10369.1	chr2	11723165	11723365	+	1	NA	NA	NA	17553	NM_001271500	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.005000	0.422886	
mm_6847.1	chr1	84243470	84243670	-	1	NA	NA	NA	-24609	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.015000	0.462687	
mm_120474.1	chr14	65974777	65974977	+	1	NA	NA	NA	6394	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.025000	0.552239	
mm_120562.1	chr14	68123607	68123807	+	1	NA	NA	NA	-45	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.135000	0.726368	
mm_159845.1	chr5	135457999	135458199	-	1	NA	NA	NA	-63553	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.055000	0.582090	
mm_107604.1	chr12	49384202	49384402	+	1	NA	NA	NA	1295	NM_008241	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.055000	0.616915	
mm_19861.1	chr2	113848223	113848423	-	1	NA	NA	NA	338	NM_181416	228482	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	0.045000	0.517413	
mm_83490.1	chr9	45945529	45945729	-	1	NA	NA	NA	-6039	NR_106055	102465659		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.035000	0.552239	
mm_51383.1	chr6	76632556	76632756	+	1	NA	NA	NA	-610061	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.010000	0.353234	
mm_97696.1	chr11	80165575	80165775	+	1	NA	NA	NA	11513	NM_172133	216991	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.015000	0.527363	
mm_93221.1	chr10	95145738	95145938	-	1	NA	NA	NA	-13	NR_131146	628062		NR_131146		Gm29684	-	predicted gene, 29684	ncRNA	0.020000	0.567164	
mm_116375.1	chr13	40892580	40892780	-	1	NA	NA	NA	5922	NM_008105	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.010000	0.447761	
mm_170643.1	chr19	9216762	9216962	+	1	NA	NA	NA	-81296	NM_025610	66514	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	0.015000	0.432836	
mm_155272.1	chrX	60030446	60030646	+	1	NA	NA	NA	31082	NM_001305797	14071	Mm.391283	NM_007979	ENSMUSG00000031138	F9	AW111646|Cf-9|Cf9	coagulation factor IX	protein-coding	0.010000	0.407960	-85(GCCCATTTATGG,-,0.00),-83(CCATTTATGGTT,+,0.00)
mm_87952.1	chr10	63061442	63061642	+	1	NA	NA	NA	-75	NM_026701	68371	Mm.261389	NM_026701	ENSMUSG00000020072	Pbld1	0610038K03Rik|Mawbp|Pbld	phenazine biosynthesis-like protein domain containing 1	protein-coding	0.025000	0.472637	
mm_122338.1	chr14	37135063	37135263	-	1	NA	NA	NA	-24	NM_001199122	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.085000	0.671642	
mm_17169.1	chr2	25305037	25305237	-	1	NA	NA	NA	13917	NM_001242940	320354	Mm.445875	NM_001242940		Grin1os	E130003G02Rik	glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand	protein-coding	0.060000	0.582090	15(TCCTAGAAAAGG,-,0.00)
mm_150732.1	chr19	43731351	43731551	+	1	NA	NA	NA	21549	NM_144874	226139	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	0.020000	0.557214	
mm_24138.1	chr3	88278354	88278554	+	1	NA	NA	NA	18384	NM_029801	76927	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	0.010000	0.542289	-35(CACTATAAAAGG,-,0.00)
mm_24771.1	chr3	95526745	95526945	+	1	NA	NA	NA	59	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.015000	0.462687	-90(GTCTTTAAATGA,-,0.00),-20(CTTTTTAGAGTC,+,0.00)
mm_157629.1	chrX	56597994	56598194	-	1	NA	NA	NA	-175	NM_146234	236792	Mm.291824	NM_146234	ENSMUSG00000061273	Mmgt1	9630048L06Rik|BC032271|Emc5|Mir5116|Tmem32|mir-5116	membrane magnesium transporter 1	protein-coding	0.080000	0.621891	
mm_107898.1	chr12	70825365	70825565	+	1	NA	NA	NA	-49	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.125000	0.751244	
mm_63391.1	chr7	127244445	127244645	+	1	NA	NA	NA	19	NM_177362	244216	Mm.41038	NM_177362	ENSMUSG00000054716	Zfp771	G630024C07Rik|Znf771	zinc finger protein 771	protein-coding	0.100000	0.766169	
mm_31539.1	chr4	55477490	55477690	+	1	NA	NA	NA	54885	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.010000	0.407960	
mm_113716.1	chr13	43615871	43616071	+	1	NA	NA	NA	174	NM_183204	328234	Mm.40588	NM_183204	ENSMUSG00000044164	Rnf182	C630023L15Rik	ring finger protein 182	protein-coding	0.130000	0.731343	
mm_46860.1	chr5	113805331	113805531	-	1	NA	NA	NA	-5079	NM_146162	231633	Mm.41681	NM_146162	ENSMUSG00000054675	Tmem119	AW208946|BC025600|obif	transmembrane protein 119	protein-coding	0.025000	0.497512	
mm_59121.1	chr7	19877060	19877260	+	1	NA	NA	NA	10805	NM_177036	319930	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.035000	0.527363	
mm_57041.1	chr6	122340122	122340322	-	1	NA	NA	NA	5	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.045000	0.542289	
mm_38371.1	chr4	138396351	138396551	-	1	NA	NA	NA	7	NM_001081672	625638	Mm.379091	NM_001081672	ENSMUSG00000078235	Fam43b	OTTMUSG00000009974	family with sequence similarity 43, member B	protein-coding	0.070000	0.666667	
mm_14632.1	chr2	136781309	136781509	+	1	NA	NA	NA	67959	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.010000	0.393035	
mm_9062.1	chr1	167393731	167393931	-	1	NA	NA	NA	-34	NM_025569	66447	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	0.085000	0.656716	
mm_13154.1	chr2	92442015	92442215	+	1	NA	NA	NA	-8046	NM_009963	12953	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	0.010000	0.472637	
mm_51042.1	chr6	65602739	65602939	+	1	NA	NA	NA	12441	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.005000	0.383085	
mm_43805.1	chr5	142903604	142903804	+	1	NA	NA	NA	3050	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.020000	0.278607	
mm_22356.1	chr2	181013173	181013373	-	1	NA	NA	NA	25904	NM_015730	11438	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	0.015000	0.577114	
mm_173206.1	chrX	69606156	69606356	-	1	NA	NA	NA	245925	NM_008032	14266	Mm.466576	NM_008032	ENSMUSG00000031189	Aff2	FMR2P|Fmr2|Ox19|Oxh	AF4/FMR2 family, member 2	protein-coding	0.050000	0.522388	
mm_108607.1	chr12	85474602	85474802	+	1	NA	NA	NA	801	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.070000	0.522388	
mm_30051.1	chr3	136325898	136326098	-	1	NA	NA	NA	68	NM_001310749	242248	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0.025000	0.626866	
mm_33003.1	chr4	120532163	120532363	+	1	NA	NA	NA	32	NM_177570	194219	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	0.020000	0.582090	
mm_48320.1	chr5	138977091	138977291	-	1	NA	NA	NA	17762	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.045000	0.537313	
mm_77193.1	chr8	112011184	112011384	-	1	NA	NA	NA	70	NM_001286384	85305	Mm.196544	NM_053092	ENSMUSG00000031948	Kars	AA589550|AL024334|AL033315|AL033367|D8Ertd698e|D8Wsu108e|LysRS|mKIAA0070	lysyl-tRNA synthetase	protein-coding	0.050000	0.522388	
mm_98229.1	chr11	88068208	88068408	+	1	NA	NA	NA	29	NM_016686	22344	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	0.150000	0.786070	
mm_108669.1	chr12	86504957	86505157	+	1	NA	NA	NA	83413	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.015000	0.497512	
mm_31527.1	chr4	55009193	55009393	+	1	NA	NA	NA	61348	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.020000	0.492537	
mm_92092.1	chr10	62865214	62865414	-	1	NA	NA	NA	14700	NM_027384	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.015000	0.542289	
mm_128499.1	chr15	51991673	51991873	-	1	NA	NA	NA	-13	NM_009009	19357	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0.115000	0.636816	
mm_147547.1	chr18	54840031	54840231	-	1	NA	NA	NA	150049	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.030000	0.527363	
mm_74690.1	chr8	14998516	14998716	-	1	NA	NA	NA	-12409	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.015000	0.527363	
mm_16064.1	chr2	167936379	167936579	+	1	NA	NA	NA	4152	NM_011201	19246	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.010000	0.457711	
mm_16558.1	chr2	181864328	181864528	+	1	NA	NA	NA	68	NM_025901	67005	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	0.080000	0.621891	
mm_104026.1	chr11	86173001	86173201	-	1	NA	NA	NA	28092	NM_178309	237911	Mm.186143	NM_178309	ENSMUSG00000034329	Brip1	3110009N10Rik|8030460J03Rik|Bach1|FACJ|Fancj|OF	BRCA1 interacting protein C-terminal helicase 1	protein-coding	0.020000	0.393035	
mm_130943.1	chr15	103250963	103251163	-	1	NA	NA	NA	613	NM_001302338	18022	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.010000	0.532338	
mm_115087.1	chr13	102701185	102701385	+	1	NA	NA	NA	7727	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.005000	0.353234	
mm_25758.1	chr3	123508502	123508702	+	1	NA	NA	NA	-266	NR_028574	69895	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	0.080000	0.621891	
mm_102174.1	chr11	53980223	53980423	-	1	NA	NA	NA	-296	NM_019723	56517	Mm.154284	NM_019723	ENSMUSG00000063652	Slc22a21	Octn3|Slc22a9	solute carrier family 22 (organic cation transporter), member 21	protein-coding	0.065000	0.646766	
mm_124015.1	chr14	76506392	76506592	-	1	NA	NA	NA	1982	NM_009366	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.020000	0.522388	
mm_45786.1	chr5	87337084	87337284	-	1	NA	NA	NA	11	NM_028094	72094	Mm.482739	NM_028094	ENSMUSG00000035780	Ugt2a3	2010321J07Rik	UDP glucuronosyltransferase 2 family, polypeptide A3	protein-coding	0.020000	0.402985	
mm_162656.1	chr10	4266431	4266631	+	1	NA	NA	NA	202	NM_031185	83397	Mm.27481	NM_031185	ENSMUSG00000038587	Akap12	AI317366|SSeCKS|Srcs5|Tsga12	A kinase (PRKA) anchor protein (gravin) 12	protein-coding	0.100000	0.701493	
mm_93376.1	chr10	105521911	105522111	-	1	NA	NA	NA	52468	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.000000	0.507463	
mm_39835.1	chr5	30869479	30869679	+	1	NA	NA	NA	-68	NM_144525	68796	Mm.205169	NM_144525	ENSMUSG00000038828	Tmem214	1110039B18Rik|4921530J21Rik|AI841294|AU018742|C76280	transmembrane protein 214	protein-coding	0.125000	0.716418	
mm_36152.1	chr4	59549189	59549389	-	1	NA	NA	NA	75	NM_178164	230257	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0.155000	0.786070	
mm_57862.1	chr6	129533557	129533757	-	1	NA	NA	NA	-373	NR_045270	100504641	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0.050000	0.592040	
mm_46935.1	chr5	114773264	114773464	-	1	NA	NA	NA	127	NM_019834	26431	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0.145000	0.766169	
mm_61820.1	chr7	87584225	87584425	+	1	NA	NA	NA	157	NM_001143834	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0.080000	0.666667	
mm_143956.1	chr17	86947784	86947984	-	1	NA	NA	NA	3	NM_029121	74915	Mm.159369	NM_029121	ENSMUSG00000053375	Atp6v1e2	4930500C14Rik|Atp6e1|E1	ATPase, H+ transporting, lysosomal V1 subunit E2	protein-coding	0.045000	0.552239	
mm_68927.1	chr7	126474967	126475167	-	1	NA	NA	NA	63	NM_001289538	20399	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	0.145000	0.746269	
mm_61812.1	chr7	87278790	87278990	+	1	NA	NA	NA	32241	NM_001285833	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	0.005000	0.333333	
mm_107004.1	chr12	11294921	11295121	+	1	NA	NA	NA	-4866	NR_106136	102465775		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.010000	0.393035	
mm_171971.1	chr5	88547038	88547238	+	1	NA	NA	NA	-7345	NM_023054	65961	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	0.050000	0.631841	
mm_87779.1	chr10	60296291	60296491	+	1	NA	NA	NA	11930	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.020000	0.582090	
mm_146072.1	chr18	70531071	70531271	+	1	NA	NA	NA	-850	NM_001289515	26447	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	0.030000	0.427861	
mm_2482.1	chr1	105981470	105981670	+	1	NA	NA	NA	-8836	NM_001122676	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.005000	0.407960	
mm_122806.1	chr14	54572758	54572958	-	1	NA	NA	NA	4803	NM_010590	16475	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	0.010000	0.587065	
mm_111379.1	chr12	87368926	87369126	-	1	NA	NA	NA	19329	NM_011479	20773	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.015000	0.412935	
mm_117903.1	chr13	99429987	99430187	-	1	NA	NA	NA	-17261	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.030000	0.487562	
mm_54946.1	chr6	48588354	48588554	-	1	NA	NA	NA	-991	NM_183309	330305	Mm.123868	NM_183309	ENSMUSG00000052730	Gm5111	A630038D02|EG330305	predicted gene 5111	protein-coding	0.030000	0.432836	-34(GAGTATAAAAGA,-,0.00)
mm_168107.1	chr10	14745850	14746050	-	1	NA	NA	NA	-14339	NM_008703	18101	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.015000	0.532338	
mm_78434.1	chr9	32032230	32032430	+	1	NA	NA	NA	-83806	NM_001195632	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.195000	0.820896	
mm_150124.1	chr19	30003695	30003895	+	1	NA	NA	NA	5	NM_025741	66745	Mm.158128	NM_025741	ENSMUSG00000024815	Trpd52l3	4931412G03Rik	tumor protein D52-like 3	protein-coding	0.035000	0.606965	
mm_94002.1	chr10	127595338	127595538	-	1	NA	NA	NA	25710	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.050000	0.547264	
mm_103365.1	chr11	75168054	75168254	-	1	NA	NA	NA	-2	NM_001098203	15248	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.095000	0.771144	
mm_170179.1	chr17	60783581	60783781	+	1	NA	NA	NA	-1770359	NM_026497	67993	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.055000	0.651741	
mm_28124.1	chr3	86920804	86921004	-	1	NA	NA	NA	-20	NM_001195500	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.130000	0.726368	
mm_137488.1	chr17	26948315	26948515	+	1	NA	NA	NA	-296	NR_037244	100526534		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0.030000	0.577114	
mm_169754.1	chr15	90882399	90882599	+	1	NA	NA	NA	15977	NR_033583	20738	Mm.431547	NR_033583		Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.070000	0.532338	
mm_10606.1	chr2	18997239	18997439	+	1	NA	NA	NA	782	NM_008845	18718	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.025000	0.537313	-59(TGCCTTTAAAGG,-,0.00),-58(GCCTTTAAAGGA,+,0.00),-58(GCCTTTAAAGGA,-,0.00),-57(CCTTTAAAGGAA,+,0.00)
mm_91266.1	chr10	23787052	23787252	-	1	NA	NA	NA	57	NM_011295	20042	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	0.115000	0.601990	-79(GCTTAAATACCG,+,0.00)
mm_116751.1	chr13	51846186	51846386	-	1	NA	NA	NA	-389	NM_011817	23882	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.020000	0.323383	
mm_14687.1	chr2	140395330	140395530	+	1	NA	NA	NA	0	NM_001013802	72899	Mm.229466	NM_028387	ENSMUSG00000068205	Macrod2	1110033L15Rik|2610107G07Rik|2900006F19Rik	MACRO domain containing 2	protein-coding	0.125000	0.751244	
mm_85842.1	chr9	110532851	110533051	-	1	NA	NA	NA	354	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.145000	0.786070	
mm_108709.1	chr12	87026228	87026428	+	1	NA	NA	NA	-236	NM_172583	217733	Mm.110032	NM_172583	ENSMUSG00000034145	Tmem63c	4932420N09|9330187M14Rik	transmembrane protein 63c	protein-coding	0.030000	0.577114	64(GCTTATCTAGCC,+,0.00)
mm_53423.1	chr6	134035759	134035959	+	1	NA	NA	NA	159	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.175000	0.796020	
mm_114947.1	chr13	96602969	96603169	+	1	NA	NA	NA	60334	NM_023420	68018	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	0.010000	0.313433	
mm_38826.1	chr4	149099723	149099923	-	1	NA	NA	NA	-11	NM_019781	56273	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	0.085000	0.646766	
mm_19956.1	chr2	117342764	117342964	-	1	NA	NA	NA	13	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.130000	0.701493	
mm_20067.1	chr2	120403997	120404197	-	1	NA	NA	NA	19	NM_173734	211499	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0.060000	0.547264	
mm_58382.1	chr6	149260817	149261017	-	1	NA	NA	NA	-48497	NM_001289661	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.015000	0.432836	
mm_157863.1	chrX	75130799	75130999	-	1	NA	NA	NA	117	NM_008621	17524	Mm.391267	NM_008621	ENSMUSG00000031402	Mpp1	55kDa|C130070C03Rik|p55	membrane protein, palmitoylated	protein-coding	0.070000	0.611940	
mm_83386.1	chr9	44603373	44603573	-	1	NA	NA	NA	-1419	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.010000	0.447761	-73(CCTTTTAAACCG,+,0.00)
mm_87733.1	chr10	60132841	60133041	+	1	NA	NA	NA	6165	NR_105871	102465546		NR_105871	ENSMUSG00000105468	Mir6906	mmu-mir-6906	microRNA 6906	ncRNA	0.025000	0.532338	
mm_117254.1	chr13	64366817	64367017	-	1	NA	NA	NA	3603	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.020000	0.457711	
mm_9870.1	chr1	184999906	185000106	-	1	NA	NA	NA	-457	NM_145515	226778	Mm.7445	NM_145515	ENSMUSG00000026620	Mark1	AW491150|B930025N23Rik|Emk3|Par-1c|mKIAA1477|mPar-1c	MAP/microtubule affinity regulating kinase 1	protein-coding	0.130000	0.726368	
mm_120321.1	chr14	63142809	63143009	+	1	NA	NA	NA	20447	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.442786	
mm_135458.1	chr16	45724608	45724808	-	1	NA	NA	NA	-177	NM_019754	56370	Mm.24183	NM_019754	ENSMUSG00000022658	Tagln3	2700038H05Rik|2900005O10Rik|AI426007|Np25	transgelin 3	protein-coding	0.045000	0.542289	
mm_82651.1	chr9	22024322	22024522	-	1	NA	NA	NA	21434	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.010000	0.353234	
mm_172608.1	chr8	15519977	15520177	+	1	NA	NA	NA	462424	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.055000	0.487562	-64(AACTTTAAATGG,-,0.00)
mm_84679.1	chr9	72099278	72099478	-	1	NA	NA	NA	11823	NM_001253862	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.005000	0.263682	
mm_40225.1	chr5	37279566	37279766	+	1	NA	NA	NA	33902	NM_007765	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.030000	0.522388	-76(CCCTTTATAAAC,+,0.00),-76(CCCTTTATAAAC,-,0.00),-74(CTTTATAAACGG,+,0.00)
mm_43233.1	chr5	129941860	129942060	+	1	NA	NA	NA	-149	NM_001001327	69568	Mm.288718	NM_027121	ENSMUSG00000066735	Vkorc1l1	2310024K08Rik	vitamin K epoxide reductase complex, subunit 1-like 1	protein-coding	0.150000	0.791045	
mm_161996.1	chr19	37330283	37330483	-	1	NA	NA	NA	230	NM_031156	15925	Mm.28366	NM_031156	ENSMUSG00000056999	Ide	1300012G03Rik|4833415K22Rik|AA675336|AI507533	insulin degrading enzyme	protein-coding	0.025000	0.477612	
mm_106971.1	chr12	8947899	8948099	+	1	NA	NA	NA	70	NM_010770	17182	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0.050000	0.631841	
mm_47667.1	chr5	127281490	127281690	-	1	NA	NA	NA	33	NR_038129	67351	Mm.320172	NR_038127	ENSMUSG00000087104	Tmem132cos	1700085B03Rik	transmembrane protein 132C, opposite strand	ncRNA	0.020000	0.487562	
mm_167.1	chr1	13069797	13069997	+	1	NA	NA	NA	57266	NM_001081209	383491	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0.010000	0.552239	-34(CATTATAAAAGG,-,0.00)
mm_96520.1	chr11	68496407	68496607	+	1	NA	NA	NA	-6512	NM_001004435	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.005000	0.547264	
mm_151466.1	chr19	58670263	58670463	+	1	NA	NA	NA	-2	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.030000	0.507463	-31(ACCTATAAAAGG,-,0.00)
mm_57856.1	chr6	129487691	129487891	-	1	NA	NA	NA	-15012	NR_132130	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.015000	0.383085	-17(GCTTTAAGACCA,+,0.00)
mm_108823.1	chr12	95702944	95703144	+	1	NA	NA	NA	10818	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.005000	0.273632	-97(ACTTTTATAGTA,+,0.00)
mm_31334.1	chr4	46463773	46463973	+	1	NA	NA	NA	12947	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.010000	0.452736	
mm_87341.1	chr10	43479206	43479406	+	1	NA	NA	NA	166	NM_199028	331623	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.160000	0.796020	
mm_99522.1	chr11	103170322	103170522	+	1	NA	NA	NA	-716	NM_001077698	57778	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.015000	0.512438	
mm_68370.1	chr7	107801126	107801326	-	1	NA	NA	NA	-47	NM_172908	244199	Mm.99576	NM_172908	ENSMUSG00000048236	Ovch2	9230106D23Rik|Ovtn	ovochymase 2	protein-coding	0.010000	0.398010	
mm_93259.1	chr10	95563948	95564148	-	1	NA	NA	NA	119	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.155000	0.756219	
mm_172186.1	chr6	50565179	50565379	+	1	NA	NA	NA	1195	NM_007808	13063	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0.005000	0.383085	-29(GCCTTTTTAAGA,-,0.00)
mm_164456.1	chr16	55283138	55283338	-	1	NA	NA	NA	-1	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0.005000	0.442786	
mm_142050.1	chr17	35626537	35626737	-	1	NA	NA	NA	0	NM_001244654	672682	Mm.454025	NM_001244654	ENSMUSG00000090588	Gm9573	Muc21	predicted gene 9573	protein-coding	0.020000	0.532338	
mm_159324.1	chr3	19531137	19531337	+	1	NA	NA	NA	-10	NM_001163537	66326	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0.015000	0.497512	
mm_28680.1	chr3	95331588	95331788	-	1	NA	NA	NA	12858	NM_001320492	76893	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.005000	0.388060	
mm_165251.1	chr2	71787728	71787928	-	1	NA	NA	NA	889	NM_001277970	16403	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	0.060000	0.562189	-91(TGCTTTTTAAGA,-,0.00)
mm_32221.1	chr4	101717488	101717688	+	1	NA	NA	NA	181	NM_010704	16847	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.060000	0.631841	
mm_168290.1	chr11	101627117	101627317	+	1	NA	NA	NA	-732	NM_025654	66599	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.045000	0.492537	
mm_107935.1	chr12	71361831	71362031	+	1	NA	NA	NA	22277	NR_136902	67348	Mm.54261	NR_136902	ENSMUSG00000100668	1700083H02Rik	100041190|Gm3190	RIKEN cDNA 1700083H02 gene	ncRNA	0.010000	0.547264	
mm_36819.1	chr4	104876297	104876497	-	1	NA	NA	NA	1	NM_001290645	230558	Mm.197638	NM_146148	ENSMUSG00000035031	C8a	-	complement component 8, alpha polypeptide	protein-coding	0.010000	0.457711	
mm_60274.1	chr7	43915044	43915244	+	1	NA	NA	NA	-18627	NM_174865	317652	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	0.025000	0.557214	
mm_30329.1	chr3	151731992	151732192	-	1	NA	NA	NA	17867	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.005000	0.333333	-29(TCTTTTAAACTG,+,0.00)
mm_23841.1	chr3	82370458	82370658	+	1	NA	NA	NA	12486	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0.025000	0.452736	
mm_92233.1	chr10	69166762	69166962	-	1	NA	NA	NA	-41690	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.025000	0.497512	
mm_113321.1	chr13	30766076	30766276	+	1	NA	NA	NA	16943	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.010000	0.487562	54(CTTTTTAAACGA,+,0.00)
mm_38619.1	chr4	142014963	142015163	-	1	NA	NA	NA	-2835	NR_131014	78917	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.110000	0.716418	
mm_82010.1	chr9	121710390	121710590	+	1	NA	NA	NA	101	NM_026794	26901	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	0.065000	0.621891	
mm_107564.1	chr12	44210283	44210483	+	1	NA	NA	NA	70	NR_049203	100885842		NR_049203	ENSMUSG00000093618	Mir5627	Gm23684|mir-5627|mmu-mir-5627	microRNA 5627	ncRNA	0.095000	0.626866	
mm_21588.1	chr2	164237345	164237545	-	1	NA	NA	NA	896	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.015000	0.437811	
mm_51000.1	chr6	63553026	63553226	+	1	NA	NA	NA	296269	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.000000	0.412935	
mm_159937.1	chr6	72958692	72958892	-	1	NA	NA	NA	-44	NM_001190327	19240	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.060000	0.592040	
mm_159234.1	chr2	139677929	139678129	+	1	NA	NA	NA	-149	NM_001276489	319909	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1, angiogenesis inhibitor	protein-coding	0.095000	0.696517	
mm_109971.1	chr12	12937885	12938085	-	1	NA	NA	NA	3851	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.020000	0.487562	
mm_105125.1	chr11	101226335	101226535	-	1	NA	NA	NA	28	NM_007970	14055	Mm.5027	NM_007970	ENSMUSG00000006920	Ezh1	ENX-2	enhancer of zeste 1 polycomb repressive complex 2 subunit	protein-coding	0.120000	0.731343	
mm_112010.1	chr12	110978850	110979050	-	1	NA	NA	NA	71	NM_175207	74251	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0.160000	0.791045	
mm_114920.1	chr13	95325051	95325251	+	1	NA	NA	NA	326	NM_028106	72114	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	0.100000	0.552239	-54(CCGTTTAAAAAC,-,0.00)
mm_67316.1	chr7	79596464	79596664	-	1	NA	NA	NA	21093	NM_019799	56315	Mm.10909	NM_019799	ENSMUSG00000030549	Rhcg	BB065800	Rhesus blood group-associated C glycoprotein	protein-coding	0.005000	0.477612	
mm_97879.1	chr11	83223481	83223681	+	1	NA	NA	NA	5	NR_015519	100043636	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0.025000	0.542289	
mm_14972.1	chr2	152094993	152095193	+	1	NA	NA	NA	-10431	NM_029688	76650	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.025000	0.616915	
mm_39016.1	chr4	152131235	152131435	-	1	NA	NA	NA	-2410	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.100000	0.706468	
mm_15513.1	chr2	158262606	158262806	+	1	NA	NA	NA	4465	NM_177850	329547	Mm.260883	NM_177850	ENSMUSG00000052922	Bpi	9230105K17Rik|Bpifd1	bactericidal permeablility increasing protein	protein-coding	0.015000	0.537313	
mm_12326.1	chr2	69394073	69394273	+	1	NA	NA	NA	13711	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.005000	0.393035	
mm_156464.1	chrX	143518307	143518507	+	1	NA	NA	NA	-184	NM_001195048	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding	0.045000	0.567164	
mm_139432.1	chr17	53568349	53568549	+	1	NA	NA	NA	1478	NM_020005	18519	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.035000	0.577114	
mm_17321.1	chr2	26476022	26476222	-	1	NA	NA	NA	-6003	NR_105962	102465602		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.015000	0.532338	
mm_36156.1	chr4	59783738	59783938	-	1	NA	NA	NA	17	NM_001013577	66209	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	0.110000	0.666667	
mm_134359.1	chr16	16829213	16829413	-	1	NA	NA	NA	50	NM_015773	50525	Mm.31701	NM_015773	ENSMUSG00000022783	Spag6l	PF16|Spag6|Spag6l1	sperm associated antigen 6-like	protein-coding	0.060000	0.597015	
mm_157083.1	chrX	9435995	9436195	-	1	NA	NA	NA	33229	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.467662	
mm_113463.1	chr13	36117258	36117458	+	1	NA	NA	NA	-1	NM_201358	380840	Mm.390576	NM_201358	ENSMUSG00000046573	Lyrm4	BC034664|Gm903	LYR motif containing 4	protein-coding	0.105000	0.636816	
mm_44809.1	chr5	33493306	33493506	-	1	NA	NA	NA	-59316	NM_011320	672284		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 transcription factor related, locus 1 (Drosophila)	protein-coding	0.010000	0.417910	-1(GGCTTTTTAAGA,-,0.00)
mm_89328.1	chr10	87932334	87932534	+	1	NA	NA	NA	-34237	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.348259	-34(GACTATAAAGAC,-,0.00)
mm_66699.1	chr7	45920560	45920760	-	1	NA	NA	NA	189	NM_001146346	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.020000	0.562189	
mm_108466.1	chr12	83632099	83632299	+	1	NA	NA	NA	-35	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.065000	0.592040	
mm_137662.1	chr17	28691708	28691908	+	1	NA	NA	NA	466	NM_001168514	26416	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.085000	0.686567	
mm_83815.1	chr9	53617260	53617460	-	1	NA	NA	NA	-7010	NM_144784	110446	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	0.015000	0.363184	
mm_141684.1	chr17	33950955	33951155	-	1	NA	NA	NA	433	NM_019420	54218	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	0.065000	0.666667	
mm_36084.1	chr4	58206572	58206772	-	1	NA	NA	NA	-76	NM_022814	64817	Mm.261024	NM_022814	ENSMUSG00000028369	Svep1	1110021D17Rik|4833413O10Rik|AA387071|D430029O09Rik|Polydom	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	protein-coding	0.015000	0.527363	31(CATTTTATAGGC,+,0.00)
mm_145429.1	chr18	58677929	58678129	+	1	NA	NA	NA	18547	NM_025478	66307	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	0.025000	0.472637	
mm_49229.1	chr6	15824885	15825085	+	1	NA	NA	NA	104324	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.000000	0.263682	
mm_70839.1	chr8	23411158	23411358	+	1	NA	NA	NA	-244	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding	0.025000	0.407960	68(TGCTTTTTAAGG,-,0.00),70(CTTTTTAAGGGG,+,0.00)
mm_131627.1	chr16	20123504	20123704	+	1	NA	NA	NA	-17459	NM_001033237	208146	Mm.390895	NM_001033237	ENSMUSG00000041215	Yeats2	BC042768|mKIAA1197	YEATS domain containing 2	protein-coding	0.005000	0.298507	
mm_30056.1	chr3	136684560	136684760	-	1	NA	NA	NA	14594	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.020000	0.477612	
mm_168591.1	chr1	173879775	173879975	-	1	NA	NA	NA	312	NM_001170853	100040462	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	0.005000	0.467662	-37(CCTTTTATATAT,+,0.00)
mm_148576.1	chr19	4878595	4878795	+	1	NA	NA	NA	5	NM_001168517	70605	Mm.36885	NM_027476	ENSMUSG00000006463	Zdhhc24	5730496N17Rik|Leng4	zinc finger, DHHC domain containing 24	protein-coding	0.095000	0.671642	
mm_153140.1	chr19	34246084	34246284	-	1	NA	NA	NA	9189	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.035000	0.532338	
mm_10075.1	chr1	195092148	195092348	-	1	NA	NA	NA	0	NR_132621	17221	Mm.12884	NM_010778	ENSMUSG00000016493	Cd46	Mcp	CD46 antigen, complement regulatory protein	protein-coding	0.045000	0.537313	
mm_15699.1	chr2	163725582	163725782	+	1	NA	NA	NA	24557	NM_007398	11486	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0.020000	0.636816	
mm_77401.1	chr8	120532518	120532718	-	1	NA	NA	NA	-3239	NM_001145897	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.020000	0.631841	
mm_59916.1	chr7	30418064	30418264	+	1	NA	NA	NA	1690	NM_011827	23900	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	0.025000	0.587065	
mm_143076.1	chr17	57041561	57041761	-	1	NA	NA	NA	-7	NM_175333	103775	Mm.33647	NM_175333	ENSMUSG00000011486	Slc25a41	4933406J04Rik|AI507137	solute carrier family 25, member 41	protein-coding	0.025000	0.552239	
mm_129907.1	chr15	84065247	84065447	-	1	NA	NA	NA	2	NM_029946	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	0.045000	0.631841	
mm_153549.1	chr19	42086257	42086457	-	1	NA	NA	NA	13	NM_198108	226123	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	0.050000	0.626866	
mm_135105.1	chr16	35573499	35573699	-	1	NA	NA	NA	32237	NM_013661	20357	Mm.42015	NM_013661	ENSMUSG00000052133	Sema5b	AI893641|SemG|Semag|mKIAA1445	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	protein-coding	0.045000	0.507463	
mm_31288.1	chr4	45932552	45932752	+	1	NA	NA	NA	-32683	NM_001290475	100121	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.005000	0.552239	
mm_109202.1	chr12	108667098	108667298	+	1	NA	NA	NA	8578	NR_029771	723909		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.020000	0.552239	
mm_159755.1	chr5	88376008	88376208	+	1	NA	NA	NA	0	NM_027793	71421	Mm.79700	NM_027793	ENSMUSG00000029282	Amtn	5430427O21Rik	amelotin	protein-coding	0.015000	0.388060	
mm_131248.1	chr16	10545246	10545446	+	1	NA	NA	NA	7	NM_001204229	74374	Mm.159176	NM_177562	ENSMUSG00000068663	Clec16a	4932416N17Rik|curt|mKIAA0350	C-type lectin domain family 16, member A	protein-coding	0.120000	0.646766	
mm_104500.1	chr11	95912508	95912708	-	1	NA	NA	NA	2263	NM_008081	14422	Mm.340702	NM_008081	ENSMUSG00000013418	B4galnt2	AI593864|Dlb-1|Dlb1|Galg2|Galgt2|Ggm3|Igf2bp1	beta-1,4-N-acetyl-galactosaminyl transferase 2	protein-coding	0.010000	0.383085	-67(CTCTATATAAGT,-,0.00)
mm_137860.1	chr17	31207981	31208181	+	1	NA	NA	NA	15	NM_177823	328795	Mm.387930	NM_177823	ENSMUSG00000042345	Ubash3a	5830413C03Rik|C330001M22|Sts-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing, A	protein-coding	0.015000	0.532338	
mm_109402.1	chr12	110375415	110375615	+	1	NA	NA	NA	-71664	NM_001135001	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.035000	0.447761	
mm_65455.1	chr7	25463609	25463809	-	1	NA	NA	NA	13916	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.035000	0.492537	
mm_47138.1	chr5	120548168	120548368	-	1	NA	NA	NA	37076	NM_001177594	170756	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.040000	0.562189	
mm_168695.1	chr11	97450167	97450367	+	1	NA	NA	NA	107	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.020000	0.636816	
mm_31777.1	chr4	63560127	63560327	+	1	NA	NA	NA	-133	NM_144905	230279	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.015000	0.567164	-11(CCTTTTCAACAC,+,0.00)
mm_109652.1	chr12	112861011	112861211	+	1	NA	NA	NA	-195	NM_019925	56696	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.035000	0.567164	
mm_39223.1	chr4	156199628	156199828	-	1	NA	NA	NA	1090	NM_015783	100038882	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	0.030000	0.557214	
mm_83178.1	chr9	40800674	40800874	-	1	NA	NA	NA	-499	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.080000	0.656716	
mm_92110.1	chr10	63057352	63057552	-	1	NA	NA	NA	-4165	NM_026701	68371	Mm.261389	NM_026701	ENSMUSG00000020072	Pbld1	0610038K03Rik|Mawbp|Pbld	phenazine biosynthesis-like protein domain containing 1	protein-coding	0.020000	0.587065	
mm_136447.1	chr16	94994857	94995057	-	1	NA	NA	NA	2739	NM_001025584	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.010000	0.452736	
mm_68644.1	chr7	118485550	118485750	-	1	NA	NA	NA	6325	NM_001033380	319622	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	0.005000	0.383085	35(TTTTTTATGGCA,+,0.00)
mm_105439.1	chr11	104369920	104370120	-	1	NA	NA	NA	72271	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.000000	0.298507	
mm_100962.1	chr11	6637188	6637388	-	1	NA	NA	NA	1361	NM_011709	22373	Mm.268094	NM_011709	ENSMUSG00000000381	Wap	-	whey acidic protein	protein-coding	0.020000	0.532338	
mm_39129.1	chr4	155080758	155080958	-	1	NA	NA	NA	5439	NM_026395	67830	Mm.241604	NM_026395	ENSMUSG00000029048	Rer1	1110060F11Rik|5830454N22Rik|AU043380	retention in endoplasmic reticulum sorting receptor 1	protein-coding	0.010000	0.447761	
mm_111577.1	chr12	101818902	101819102	-	1	NA	NA	NA	117	NM_011812	23876	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	0.020000	0.467662	
mm_68180.1	chr7	103853106	103853306	-	1	NA	NA	NA	1	NM_008221	15135	Mm.440164	NM_008221	ENSMUSG00000052187	Hbb-y	Ey|Hby	hemoglobin Y, beta-like embryonic chain	protein-coding	0.005000	0.477612	-33(AAGCATAAAAGG,-,0.00),-31(GCATAAAAGGCC,+,0.00)
mm_36779.1	chr4	102984114	102984314	-	1	NA	NA	NA	-2165	NM_001163767	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.015000	0.457711	
mm_93951.1	chr10	127262947	127263147	-	1	NA	NA	NA	316	NM_008447	16572	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	0.105000	0.691542	
mm_129988.1	chr15	86141267	86141467	-	1	NA	NA	NA	44774	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.035000	0.422886	
mm_130784.1	chr15	101562791	101562991	-	1	NA	NA	NA	59	NM_177717	239673	Mm.461267	NM_177717	ENSMUSG00000048699	Krt90	4732456N10Rik|Ket90	keratin 90	protein-coding	0.025000	0.517413	
mm_142171.1	chr17	36231216	36231416	-	1	NA	NA	NA	26530	NM_026308	67676	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0.090000	0.706468	
mm_12228.1	chr2	68470750	68470950	+	1	NA	NA	NA	1131	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.060000	0.547264	
mm_59132.1	chr7	19965441	19965641	+	1	NA	NA	NA	129	NM_027839	71601	Mm.98097	NM_027839	ENSMUSG00000070777	Ceacam20	9130012D09Rik	carcinoembryonic antigen-related cell adhesion molecule 20	protein-coding	0.005000	0.547264	
mm_24914.1	chr3	96262352	96262552	+	1	NA	NA	NA	865	NM_033596	97122	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0.030000	0.507463	
mm_73586.1	chr8	109986563	109986763	+	1	NA	NA	NA	-3773	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.020000	0.527363	
mm_87524.1	chr10	53337266	53337466	+	1	NA	NA	NA	-320	NM_023129	18821	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0.010000	0.467662	77(AACTCTTTAAGG,-,0.00)
mm_60212.1	chr7	43463011	43463211	+	1	NA	NA	NA	-122	NM_001290316	75690	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.005000	0.547264	
mm_52750.1	chr6	120666227	120666427	+	1	NA	NA	NA	-94	NM_001128151	330409	Mm.333357	NM_001128151	ENSMUSG00000071226	Cecr2	2610101O16Rik|2810409N01Rik|Gtl4|mKIAA1740	cat eye syndrome chromosome region, candidate 2	protein-coding	0.120000	0.756219	
mm_142989.1	chr17	56289975	56290175	-	1	NA	NA	NA	436	NM_025836	66905	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	0.035000	0.587065	
mm_32461.1	chr4	107381045	107381245	+	1	NA	NA	NA	13361	NM_028355	72787	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0.030000	0.552239	
mm_104973.1	chr11	100207319	100207519	-	1	NA	NA	NA	91	NM_016958	16664	Mm.439898	NM_016958	ENSMUSG00000045545	Krt14	AI626930|CK-14|K14|Krt-1.14|Krt1-14	keratin 14	protein-coding	0.035000	0.616915	
mm_155863.1	chrX	101377229	101377429	+	1	NA	NA	NA	94	NM_008124	14618	Mm.21198	NM_008124	ENSMUSG00000047797	Gjb1	Cnx32|Cx32|connexin-32	gap junction protein, beta 1	protein-coding	0.015000	0.601990	
mm_115173.1	chr13	108158639	108158839	+	1	NA	NA	NA	1	NM_028042	71991	Mm.212208	NM_028042	ENSMUSG00000021694	Ercc8	2410022P04Rik|2810431L23Rik|4631412O06Rik|B130065P18Rik|Ckn1|Csa	excision repaiross-complementing rodent repair deficiency, complementation group 8	protein-coding	0.075000	0.631841	
mm_67659.1	chr7	85541145	85541345	-	1	NA	NA	NA	27843	NM_001105183	670940	Mm.469908	NM_001105183	ENSMUSG00000090806	Vmn2r70	EG620835	vomeronasal 2, receptor 70	protein-coding	0.005000	0.318408	
mm_168100.1	chr10	129593668	129593868	-	1	NA	NA	NA	14711	NM_146931	258933	Mm.377755	NM_146931	ENSMUSG00000052012	Olfr796	MOR269-1	olfactory receptor 796	protein-coding	0.070000	0.646766	
mm_154748.1	chrX	10582036	10582236	+	1	NA	NA	NA	97020	NM_019634	21912	Mm.18590	NM_019634	ENSMUSG00000058254	Tspan7	1200014P11Rik|A15|AI323365|Cd231|Mxs1|PE31|R74651|TALLA|Tm4sf2	tetraspanin 7	protein-coding	0.020000	0.477612	-34(GCCCTGAAAAGC,-,0.00)
mm_108770.1	chr12	89771956	89772156	+	1	NA	NA	NA	-40427	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.010000	0.318408	
mm_141232.1	chr17	27431337	27431537	-	1	NA	NA	NA	72096	NM_001013385	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.040000	0.577114	
mm_4503.1	chr1	173729049	173729249	+	1	NA	NA	NA	12660	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.000000	0.487562	
mm_10645.1	chr2	20559793	20559993	+	1	NA	NA	NA	40380	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.005000	0.457711	
mm_19030.1	chr2	76969109	76969309	-	1	NA	NA	NA	13338	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.015000	0.497512	
mm_14005.1	chr2	122028454	122028654	+	1	NA	NA	NA	-26	NM_144545	78655	Mm.458184	NM_144545	ENSMUSG00000027236	Eif3j1	1810016I04Rik|2700079K05Rik|AA409117|AA409446|C78575|Eif3j|Eif3j-1|Eif3j-2|Eif3j2|Eif3s1|eIF-3-alpha-A|eIF-3-alpha-B|eIF3-alpha|eIF3-p35|eIF3j-A|eIF3j-B	eukaryotic translation initiation factor 3, subunit J1	protein-coding	0.115000	0.751244	
mm_83527.1	chr9	46230021	46230221	-	1	NA	NA	NA	1491	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.090000	0.666667	
mm_152046.1	chr19	6141104	6141304	-	1	NA	NA	NA	-67	NM_019722	56327	Mm.21071	NM_019722	ENSMUSG00000024944	Arl2	2610009M23Rik|AI115441|AW553335	ADP-ribosylation factor-like 2	protein-coding	0.090000	0.671642	
mm_71977.1	chr8	70594307	70594507	+	1	NA	NA	NA	-74	NM_023627	71780	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.100000	0.656716	
mm_78222.1	chr9	21568189	21568389	+	1	NA	NA	NA	21395	NM_153141	59035	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0.005000	0.318408	
mm_82605.1	chr9	21367362	21367562	-	1	NA	NA	NA	-409	NM_001042708	16201	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.075000	0.582090	
mm_104720.1	chr11	98149486	98149686	-	1	NA	NA	NA	30	NM_028149	72194	Mm.218350	NM_028149	ENSMUSG00000020883	Fbxl20	2610511F20Rik|4632423N09Rik|AI849362|AL117906|C86145|Fbl2|Scr|mKIAA4147	F-box and leucine-rich repeat protein 20	protein-coding	0.125000	0.701493	
mm_80083.1	chr9	70067851	70068051	+	1	NA	NA	NA	-29863	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.010000	0.467662	
mm_39502.1	chr5	21194326	21194526	+	1	NA	NA	NA	8159	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.010000	0.303483	
mm_159941.1	chr6	83086241	83086441	+	1	NA	NA	NA	-24	NM_010692	16815	Mm.20359	NM_010692	ENSMUSG00000034968	Lbx2	Lbx2h	ladybird homeobox homolog 2 (Drosophila)	protein-coding	0.050000	0.636816	
mm_93042.1	chr10	88378962	88379162	-	1	NA	NA	NA	-350	NM_001004164	432486	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.085000	0.706468	
mm_97069.1	chr11	72961104	72961304	+	1	NA	NA	NA	35	NM_001163337	53313	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0.105000	0.761194	
mm_42142.1	chr5	111417665	111417865	+	1	NA	NA	NA	-401	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.100000	0.691542	
mm_55475.1	chr6	68862945	68863145	-	1	NA	NA	NA	464129	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.427861	
mm_88956.1	chr10	81390219	81390419	+	1	NA	NA	NA	-2745	NM_001099917	72273	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.025000	0.552239	
mm_82885.1	chr9	32526839	32527039	-	1	NA	NA	NA	14513	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.010000	0.517413	
mm_14027.1	chr2	122152595	122152795	+	1	NA	NA	NA	5008	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.010000	0.328358	
mm_55463.1	chr6	67535591	67535791	-	1	NA	NA	NA	131	NM_020047	56753	Mm.439913	NM_020047	ENSMUSG00000051397	Tacstd2	C80403|EGP-1|GA733-1|Ly97|TROP2	tumor-associated calcium signal transducer 2	protein-coding	0.045000	0.587065	
mm_93758.1	chr10	120193247	120193447	-	1	NA	NA	NA	8190	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.030000	0.537313	
mm_86263.1	chr9	121704593	121704793	-	1	NA	NA	NA	336	NM_001164562	215474	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.040000	0.582090	
mm_43623.1	chr5	138162087	138162287	+	1	NA	NA	NA	1085	NM_012002	26893	Mm.3981	NM_012002	ENSMUSG00000019494	Cops6	Sgn3|VIP/MOV34	COP9 signalosome subunit 6	protein-coding	0.005000	0.467662	
mm_8738.1	chr1	160212769	160212969	-	1	NA	NA	NA	23	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0.110000	0.696517	
mm_126084.1	chr15	77840174	77840374	+	1	NA	NA	NA	1901	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.010000	0.447761	
mm_76801.1	chr8	104247472	104247672	-	1	NA	NA	NA	986	NR_045642	57813	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.030000	0.393035	
mm_5771.1	chr1	51473861	51474061	-	1	NA	NA	NA	4438	NM_028696	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.005000	0.402985	
mm_27020.1	chr3	26046001	26046201	-	1	NA	NA	NA	107206	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.378109	
mm_59691.1	chr7	28451866	28452066	+	1	NA	NA	NA	-19	NM_030562	80749	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	0.185000	0.890547	
mm_138304.1	chr17	34643857	34644057	+	1	NA	NA	NA	-926	NM_019873	56299	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0.015000	0.487562	
mm_129103.1	chr15	76047579	76047779	-	1	NA	NA	NA	17209	NR_105917	102466772		NR_105917	ENSMUSG00000098451	Mir6952	Gm27948|mmu-mir-6952	microRNA 6952	ncRNA	0.015000	0.601990	
mm_1060.1	chr1	58973573	58973773	+	1	NA	NA	NA	102	NM_172656	227154	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	0.100000	0.721393	
mm_153408.1	chr19	40564880	40565080	-	1	NA	NA	NA	23483	NM_019698	56454	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	0.060000	0.582090	
mm_171271.1	chr3	88772414	88772614	-	1	NA	NA	NA	85	NM_018804	229521	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0.045000	0.601990	
mm_124164.1	chr14	93685178	93685378	-	1	NA	NA	NA	203610	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.010000	0.422886	73(CAGTTTTTAAGG,-,0.00)
mm_134647.1	chr16	21947385	21947585	-	1	NA	NA	NA	67	NM_025693	66664	Mm.46480	NM_025693	ENSMUSG00000022856	Tmem41a	2900010K02Rik|5730578N08Rik	transmembrane protein 41a	protein-coding	0.135000	0.741294	
mm_167222.1	chr8	12314579	12314779	+	1	NA	NA	NA	-71092	NR_027975	434280	Mm.447484	NM_001013812	ENSMUSG00000047935	Gm5607	EG434280	predicted gene 5607	ncRNA	0.015000	0.432836	
mm_96363.1	chr11	67098475	67098675	+	1	NA	NA	NA	-1229	NR_105888	102466766		NR_105888	ENSMUSG00000098855	Mir6923	Gm27312|mmu-mir-6923	microRNA 6923	ncRNA	0.030000	0.497512	
mm_158395.1	chrX	136741024	136741224	-	1	NA	NA	NA	31	NM_001168225	56397	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	0.040000	0.472637	
mm_58191.1	chr6	143069930	143070130	-	1	NA	NA	NA	30122	NM_001286578	74741	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.015000	0.378109	
mm_120082.1	chr14	57746072	57746272	+	1	NA	NA	NA	-49	NM_015771	50523	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.135000	0.751244	
mm_141982.1	chr17	35164775	35164975	-	1	NA	NA	NA	2	NM_001199044	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.135000	0.771144	
mm_66853.1	chr7	51862149	51862349	-	1	NA	NA	NA	18	NM_001115087	100040608	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding	0.130000	0.681592	
mm_62175.1	chr7	97399982	97400182	+	1	NA	NA	NA	79	NM_024220	68197	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding	0.080000	0.587065	
mm_156770.1	chrX	160768053	160768253	+	1	NA	NA	NA	140	NM_011302	20147	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	0.005000	0.417910	
mm_77194.1	chr8	112011205	112011405	-	1	NA	NA	NA	49	NM_001286384	85305	Mm.196544	NM_053092	ENSMUSG00000031948	Kars	AA589550|AL024334|AL033315|AL033367|D8Ertd698e|D8Wsu108e|LysRS|mKIAA0070	lysyl-tRNA synthetase	protein-coding	0.060000	0.557214	
mm_98752.1	chr11	96545342	96545542	+	1	NA	NA	NA	80851	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.015000	0.388060	
mm_31388.1	chr4	48043459	48043659	+	1	NA	NA	NA	-1746	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.090000	0.646766	
mm_170807.1	chr2	175930982	175931182	-	1	NA	NA	NA	18	NM_001177407	667962	Mm.422667	NM_001177405	ENSMUSG00000089756	Zfp966	Gm8898|OTTMUSG00000016203	zinc finger protein 966	protein-coding	0.015000	0.487562	
mm_52541.1	chr6	115931871	115932071	+	1	NA	NA	NA	44	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.055000	0.621891	-96(CACTTTATAAGG,-,0.00),-94(CTTTATAAGGGT,+,0.00)
mm_169308.1	chr14	104715779	104715979	-	1	NA	NA	NA	76732	NR_015593	320249	Mm.320725	NR_015593		D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0.085000	0.552239	-31(AACTTTAAATGG,-,0.00)
mm_21831.1	chr2	165400304	165400504	-	1	NA	NA	NA	-10	NM_029021	74614	Mm.72179	NM_029021	ENSMUSG00000027670	Ocstamp	4833422F24Rik|OC-STAMP	osteoclast stimulatory transmembrane protein	protein-coding	0.010000	0.592040	
mm_163019.1	chr11	46740122	46740322	+	1	NA	NA	NA	-1	NM_001166632	171283	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	0.010000	0.477612	
mm_95285.1	chr11	45893802	45894002	+	1	NA	NA	NA	41938	NM_001045520	216705	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.035000	0.437811	
mm_35555.1	chr4	41520215	41520415	-	1	NA	NA	NA	2878	NR_045726	76992	Mm.440546	NR_045726	ENSMUSG00000036162	Fam219aos	1700066J24Rik	family with sequence similarity 219, member A, opposite strand	ncRNA	0.060000	0.572139	-95(CCTTTTCTACAG,+,0.00)
mm_64997.1	chr7	16924035	16924235	-	1	NA	NA	NA	-103	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.145000	0.706468	
mm_89806.1	chr10	103029038	103029238	+	1	NA	NA	NA	-361	NM_172553	216285	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding	0.040000	0.611940	
mm_172164.1	chr6	44792926	44793126	+	1	NA	NA	NA	-267035	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.070000	0.552239	
mm_168387.1	chr1	124922544	124922744	+	1	NA	NA	NA	513083	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.015000	0.417910	
mm_114986.1	chr13	97493491	97493691	+	1	NA	NA	NA	10890	NR_110431	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.035000	0.527363	
mm_162198.1	chrX	119927112	119927312	+	1	NA	NA	NA	16	NM_053114	93728	Mm.125979	NM_053114	ENSMUSG00000034732	Pabpc5	C820015E17	poly(A) binding protein, cytoplasmic 5	protein-coding	0.080000	0.661692	
mm_619.1	chr1	40084680	40084880	+	1	NA	NA	NA	12	NM_010555	16178	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.000000	0.557214	
mm_31569.1	chr4	57594400	57594600	+	1	NA	NA	NA	26252	NM_172868	242481	Mm.331630	NM_172868	ENSMUSG00000090053	Palm2	53-H12|B130066I24|R75368|pEN70	paralemmin 2	protein-coding	0.005000	0.457711	
mm_36224.1	chr4	62524304	62524504	-	1	NA	NA	NA	610	NM_021498	59001	Mm.27444	NM_021498	ENSMUSG00000028394	Pole3	1810034K18Rik|YBL1	polymerase (DNA directed), epsilon 3 (p17 subunit)	protein-coding	0.030000	0.502488	
mm_61860.1	chr7	88309833	88310033	+	1	NA	NA	NA	31848	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.025000	0.407960	
mm_137535.1	chr17	27556487	27556687	+	1	NA	NA	NA	13	NM_001166540	15361	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0.115000	0.716418	-57(CCTTTTAAATCC,+,0.00),32(CTCTTTTTAAGC,-,0.00),34(CTTTTTAAGCTC,+,0.00)
mm_89460.1	chr10	93209983	93210183	+	1	NA	NA	NA	47298	NR_035452	100316689		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	0.000000	0.328358	
mm_156258.1	chrX	136819958	136820158	+	1	NA	NA	NA	-2688	NM_001290561	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.020000	0.457711	
mm_124457.1	chr14	120042350	120042550	-	1	NA	NA	NA	-15	NM_001001490	239283	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding	0.035000	0.462687	
mm_139599.1	chr17	57255864	57256064	+	1	NA	NA	NA	6513	NM_001242389	106628	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	0.000000	0.437811	
mm_87900.1	chr10	62071605	62071805	+	1	NA	NA	NA	39308	NM_027251	69894	Mm.294126	NM_027251	ENSMUSG00000020083	2010107G23Rik	AA545165	RIKEN cDNA 2010107G23 gene	protein-coding	0.010000	0.517413	
mm_40099.1	chr5	34573742	34573942	+	1	NA	NA	NA	178	NM_001331086	11518	Mm.289106	NM_013457	ENSMUSG00000029106	Add1	AI256389	adducin 1 (alpha)	protein-coding	0.135000	0.781095	
mm_133692.1	chr16	92539781	92539981	+	1	NA	NA	NA	41734	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	0.005000	0.323383	
mm_98771.1	chr11	96739827	96740027	+	1	NA	NA	NA	37628	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.000000	0.288557	79(GCTTTTATGCAC,+,0.00)
mm_124688.1	chr15	6435301	6435501	+	1	NA	NA	NA	-9932	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.010000	0.532338	
mm_22743.1	chr3	19957001	19957201	+	1	NA	NA	NA	47	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.010000	0.398010	
mm_33488.1	chr4	130822945	130823145	+	1	NA	NA	NA	30508	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.010000	0.577114	
mm_170395.1	chr1	86358073	86358273	-	1	NA	NA	NA	1282	NM_010880	17975	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	0.020000	0.462687	
mm_49448.1	chr6	29348051	29348251	+	1	NA	NA	NA	45	NM_184053	12321	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	0.075000	0.636816	
mm_160647.1	chr9	110243647	110243847	+	1	NA	NA	NA	-36	NM_013884	29873	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding	0.005000	0.412935	
mm_40514.1	chr5	57800280	57800480	+	1	NA	NA	NA	82299	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.000000	0.348259	
mm_76736.1	chr8	95142427	95142627	-	1	NA	NA	NA	13	NM_010631	16582	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.145000	0.766169	
mm_55973.1	chr6	85865709	85865909	-	1	NA	NA	NA	3328	NM_053096	93673	Mm.24251	NM_053096	ENSMUSG00000033634	Nat8f2	Cml2	N-acetyltransferase 8 (GCN5-related) family member 2	protein-coding	0.010000	0.417910	-4(GGTCATAAATGG,-,0.00)
mm_162217.1	chrX	138209508	138209708	-	1	NA	NA	NA	-28	NM_026469	67944	Mm.443280	NM_026469	ENSMUSG00000071686	Tex13a	1700025D03Rik	testis expressed 13A	protein-coding	0.010000	0.552239	
mm_1653.1	chr1	74662006	74662206	+	1	NA	NA	NA	352	NM_001014974	67534	Mm.260714	NM_001014974	ENSMUSG00000033257	Ttll4	4632407P03Rik|AI451681|mKIAA0173	tubulin tyrosine ligase-like family, member 4	protein-coding	0.090000	0.646766	
mm_41187.1	chr5	88327753	88327953	+	1	NA	NA	NA	10541	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.000000	0.358209	-82(GGATTTAAAAGA,-,0.00)
mm_87877.1	chr10	61648512	61648712	+	1	NA	NA	NA	-9	NM_026438	67895	Mm.28897	NM_026438	ENSMUSG00000020089	Ppa1	2010317E03Rik|Pyp	pyrophosphatase (inorganic) 1	protein-coding	0.145000	0.746269	-27(ACGCATTAAAGG,-,0.00)
mm_80739.1	chr9	94713383	94713583	+	1	NA	NA	NA	-38346	NR_106116	102465763		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.005000	0.402985	
mm_79575.1	chr9	58134714	58134914	+	1	NA	NA	NA	149	NM_001162479	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.015000	0.572139	
mm_133469.1	chr16	89226729	89226929	+	1	NA	NA	NA	20968	NM_001163615	622935	Mm.459837	NM_001163615	ENSMUSG00000091039	Krtap20-2	1190004K03Rik|EG622935|Gm6371	keratin associated protein 20-2	protein-coding	0.005000	0.398010	-33(GTATATAAAAGG,-,0.00)
mm_104494.1	chr11	95837111	95837311	-	1	NA	NA	NA	-5084	NM_023121	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.035000	0.587065	
mm_42870.1	chr5	122235308	122235508	+	1	NA	NA	NA	25121	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.025000	0.577114	
mm_87236.1	chr10	40703587	40703787	+	1	NA	NA	NA	20405	NM_177793	327747	Mm.80407	NM_177793	ENSMUSG00000045555	Mettl24	9030224M15Rik	methyltransferase like 24	protein-coding	0.015000	0.492537	
mm_15737.1	chr2	164237140	164237340	+	1	NA	NA	NA	1101	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.000000	0.393035	
mm_157030.1	chrX	7923079	7923279	-	1	NA	NA	NA	3357	NM_013892	30052	Mm.4881	NM_013892	ENSMUSG00000039278	Pcsk1n	AI848336|KEP|PEN|PEN19|PEN20|Pan3|SAAS|SAASCT|bLEN|lLEN|proSAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding	0.040000	0.656716	
mm_119920.1	chr14	54959743	54959943	+	1	NA	NA	NA	6764	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.025000	0.537313	
mm_41567.1	chr5	93159745	93159945	+	1	NA	NA	NA	46650	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.010000	0.363184	
mm_406.1	chr1	34187777	34187977	+	1	NA	NA	NA	27547	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.015000	0.402985	
mm_36934.1	chr4	108579002	108579202	-	1	NA	NA	NA	234	NM_172697	230596	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	0.040000	0.407960	
mm_131332.1	chr16	13266326	13266526	+	1	NA	NA	NA	1347	NM_181860	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.000000	0.402985	
mm_22132.1	chr2	170427758	170427958	-	1	NA	NA	NA	-13	NM_029815	76960	Mm.240850	NM_029815	ENSMUSG00000013523	Bcas1	2210416M21Rik|9030223A09Rik|AI841227|NABC1	breast carcinoma amplified sequence 1	protein-coding	0.020000	0.597015	
mm_167931.1	chrX	105166589	105166789	+	1	NA	NA	NA	-1184	NR_002167	279610	Mm.418157	NR_002167		E530001F21Rik	-	RIKEN cDNA E530001F21 gene	pseudo	0.000000	0.353234	
mm_56705.1	chr6	115037753	115037953	-	1	NA	NA	NA	21	NM_026894	68971	Mm.24937	NM_026894	ENSMUSG00000030316	Tamm41	1500001M20Rik|TAM41	TAM41 mitochondrial translocator assembly and maintenance homolog	protein-coding	0.135000	0.746269	
mm_96420.1	chr11	67256088	67256288	+	1	NA	NA	NA	18376	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.010000	0.398010	
mm_34005.1	chr4	137931100	137931300	+	1	NA	NA	NA	-62256	NM_001256198	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.035000	0.537313	
mm_156528.1	chrX	151046793	151046993	+	1	NA	NA	NA	-277	NM_008001	14163	Mm.8142	NM_008001	ENSMUSG00000025265	Fgd1	ZFYVE3	FYVE, RhoGEF and PH domain containing 1	protein-coding	0.075000	0.671642	
mm_9093.1	chr1	168873631	168873831	-	1	NA	NA	NA	383088	NR_105766	102465178		NR_105766	ENSMUSG00000098407	Mir6348	Gm27412|mmu-mir-6348	microRNA 6348	ncRNA	0.005000	0.373134	
mm_142446.1	chr17	45592363	45592563	-	1	NA	NA	NA	-70	NM_022880	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.025000	0.592040	-61(GCTTATAAACTG,+,0.00)
mm_155131.1	chrX	49485005	49485205	+	1	NA	NA	NA	14655	NM_001081123	75404	Mm.44305	NM_001081123	ENSMUSG00000036198	Arhgap36	1100001E04Rik|rho-gap	Rho GTPase activating protein 36	protein-coding	0.045000	0.611940	
mm_65596.1	chr7	27337574	27337774	-	1	NA	NA	NA	-62	NM_175641	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.065000	0.666667	
mm_155520.1	chrX	74254957	74255157	+	1	NA	NA	NA	370	NM_007927	13726	Mm.18892	NM_007927	ENSMUSG00000001964	Emd	AW550900|Sta	emerin	protein-coding	0.055000	0.606965	
mm_143265.1	chr17	65639693	65639893	-	1	NA	NA	NA	-37	NM_153519	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.000000	0.482587	
mm_48032.1	chr5	136246489	136246689	-	1	NA	NA	NA	-1649	NM_018825	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.005000	0.487562	
mm_23371.1	chr3	55461870	55462070	+	1	NA	NA	NA	212	NM_001195540	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.020000	0.547264	
mm_103909.1	chr11	83578508	83578708	-	1	NA	NA	NA	28	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.005000	0.457711	
mm_107421.1	chr12	35047105	35047305	+	1	NA	NA	NA	16	NM_001014973	217463	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0.160000	0.726368	
mm_71229.1	chr8	40905495	40905695	+	1	NA	NA	NA	-20638	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.050000	0.492537	
mm_64998.1	chr7	16945553	16945753	-	1	NA	NA	NA	971	NM_001099636	434128	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	0.070000	0.621891	
mm_71348.1	chr8	45628021	45628221	+	1	NA	NA	NA	370	NM_001310707	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.035000	0.582090	-89(GGTTCTAAAGGG,-,0.00)
mm_4654.1	chr1	180345839	180346039	+	1	NA	NA	NA	-15390	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.015000	0.482587	
mm_67375.1	chr7	79841886	79842086	-	1	NA	NA	NA	366	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.025000	0.527363	
mm_103523.1	chr11	76846950	76847150	-	1	NA	NA	NA	-42	NM_007754	12874	Mm.276736	NM_007754	ENSMUSG00000020841	Cpd	AA960140|AW322530|D830034L15Rik	carboxypeptidase D	protein-coding	0.095000	0.651741	
mm_20735.1	chr2	137116242	137116442	-	1	NA	NA	NA	178	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.145000	0.681592	
mm_162719.1	chr10	36974426	36974626	+	1	NA	NA	NA	-18	NM_008229	15182	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.155000	0.781095	
mm_163587.1	chr13	38108725	38108925	+	1	NA	NA	NA	-42469	NM_023842	109620	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding	0.010000	0.422886	-1(CAATATAAAAGG,-,0.00)
mm_146260.1	chr18	77814260	77814460	+	1	NA	NA	NA	19810	NM_013831	19201	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.005000	0.402985	
mm_6503.1	chr1	74295690	74295890	-	1	NA	NA	NA	8546	NM_027154	69660	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.010000	0.616915	-35(CCCTCTAAAGGG,-,0.00),69(TTCCCTTAAAGG,-,0.00),70(TCCCTTAAAGGC,-,0.00),71(CCCTTAAAGGCG,+,0.00)
mm_98074.1	chr11	86484534	86484734	+	1	NA	NA	NA	-23	NM_029788	76892	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0.135000	0.746269	
mm_151009.1	chr19	46707380	46707580	+	1	NA	NA	NA	37	NM_020577	57344	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	0.045000	0.616915	
mm_123143.1	chr14	56810952	56811152	-	1	NA	NA	NA	412	NM_001253753	219105	Mm.473172	NM_144842	ENSMUSG00000040123	Zmym5	9830124H08Rik	zinc finger, MYM-type 5	protein-coding	0.055000	0.502488	
mm_99012.1	chr11	98843699	98843899	+	1	NA	NA	NA	7014	NM_001080925	268480	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0.010000	0.358209	
mm_55988.1	chr6	85961551	85961751	-	1	NA	NA	NA	16	NM_028099	72102	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	0.125000	0.666667	
mm_24181.1	chr3	88583674	88583874	+	1	NA	NA	NA	4103	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.020000	0.537313	
mm_81774.1	chr9	114688635	114688835	+	1	NA	NA	NA	-96	NM_146229	235661	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	0.135000	0.746269	
mm_116312.1	chr13	37050156	37050356	-	1	NA	NA	NA	-12	NM_001166391	74145	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0.010000	0.437811	
mm_131801.1	chr16	22899189	22899389	+	1	NA	NA	NA	-4903	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.005000	0.472637	
mm_4261.1	chr1	171437476	171437676	+	1	NA	NA	NA	15	NM_172647	16456	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	0.090000	0.636816	
mm_114851.1	chr13	93095552	93095752	+	1	NA	NA	NA	819	NR_046182	408254	Mm.474857	NR_046182		A630019I02Rik	-	RIKEN cDNA A630019I02 gene	ncRNA	0.010000	0.517413	
mm_92516.1	chr10	78464855	78465055	-	1	NA	NA	NA	-7	NM_172134	216134	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.115000	0.686567	
mm_75120.1	chr8	34764815	34765015	-	1	NA	NA	NA	-42695	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.005000	0.402985	
mm_115489.1	chr13	3610949	3611149	-	1	NA	NA	NA	59	NM_134063	105203	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	0.095000	0.626866	
mm_18684.1	chr2	71367685	71367885	-	1	NA	NA	NA	-231	NM_172436	78830	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.060000	0.656716	
mm_9706.1	chr1	179502016	179502216	-	1	NA	NA	NA	15887	NM_027188	69726	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.005000	0.318408	66(CCATTTATGCCA,+,0.00)
mm_101187.1	chr11	17198434	17198634	-	1	NA	NA	NA	13055	NM_025443	66249	Mm.27831	NM_025443	ENSMUSG00000020116	Pno1	1810003N24Rik|AA407421|AU015468|AU019495|AU042323|Emi3|Imi3	partner of NOB1 homolog	protein-coding	0.000000	0.338308	
mm_48955.1	chr6	4540748	4540948	+	1	NA	NA	NA	35230	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.000000	0.422886	
mm_104794.1	chr11	98770235	98770435	-	1	NA	NA	NA	5042	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.050000	0.621891	
mm_24465.1	chr3	90654045	90654245	+	1	NA	NA	NA	-157	NM_199422	381493	Mm.291525	NM_199422	ENSMUSG00000063767	S100a7a	AY465109|Gm1020|S100A7L1|S100A7f|S100a15|S100a15a|S100a17l1	S100 calcium binding protein A7A	protein-coding	0.010000	0.497512	
mm_131118.1	chr16	5378063	5378263	+	1	NA	NA	NA	-122207	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.015000	0.437811	
mm_37815.1	chr4	131672040	131672240	-	1	NA	NA	NA	166138	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	0.005000	0.487562	
mm_11872.1	chr2	49224099	49224299	+	1	NA	NA	NA	-21701	NM_001290656	109241	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630|OTTMUSG00000012483	methyl-CpG binding domain protein 5	protein-coding	0.010000	0.278607	
mm_133940.1	chr16	3907614	3907814	-	1	NA	NA	NA	975	NM_028484	73261	Mm.486226	NM_028484	ENSMUSG00000005983	1700037C18Rik	2810022L20Rik	RIKEN cDNA 1700037C18 gene	protein-coding	0.005000	0.552239	
mm_92948.1	chr10	85103561	85103761	-	1	NA	NA	NA	1034	NM_001013028	103266	Mm.335025	NM_001013028	ENSMUSG00000060935	Tmem263	AI597468	transmembrane protein 263	protein-coding	0.050000	0.572139	
mm_91301.1	chr10	24916051	24916251	-	1	NA	NA	NA	5487	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.035000	0.512438	-98(GCTTTTATAATG,+,0.00)
mm_120692.1	chr14	70776075	70776275	+	1	NA	NA	NA	1794	NM_010071	13449	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip	docking protein 2	protein-coding	0.025000	0.626866	
mm_73231.1	chr8	104111322	104111522	+	1	NA	NA	NA	-5549	NR_131138	546096	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	-	predicted gene, 29682	ncRNA	0.010000	0.527363	
mm_149084.1	chr19	8920292	8920492	+	1	NA	NA	NA	-1	NM_024256	72727	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	0.105000	0.711443	
mm_64280.1	chr7	141813633	141813833	+	1	NA	NA	NA	24722	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.015000	0.522388	
mm_12698.1	chr2	76498994	76499194	+	1	NA	NA	NA	88	NM_001290735	99031	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding	0.035000	0.557214	
mm_152650.1	chr19	12574139	12574339	-	1	NA	NA	NA	714	NM_026640	107373	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	0.005000	0.497512	-35(CTCTCTTAAAGG,-,0.00),-34(TCTCTTAAAGGC,+,0.00)
mm_89421.1	chr10	90907604	90907804	+	1	NA	NA	NA	77861	NM_001347053	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.020000	0.437811	30(TGCTTTAAGAGC,-,0.00),31(GCTTTAAGAGCG,+,0.00)
mm_132079.1	chr16	30186448	30186648	+	1	NA	NA	NA	80984	NM_027904	71756	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.025000	0.532338	
mm_69329.1	chr7	128740304	128740504	-	1	NA	NA	NA	25	NM_145955	210711	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0.130000	0.731343	
mm_103087.1	chr11	69920401	69920601	-	1	NA	NA	NA	129	NM_001166590	276770	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.065000	0.656716	
mm_47967.1	chr5	135778205	135778405	-	1	NA	NA	NA	-4	NM_001289555	76571	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0.075000	0.631841	
mm_157448.1	chrX	41911795	41911995	-	1	NA	NA	NA	6	NM_001033422	331401	Mm.259498	NM_001033422	ENSMUSG00000037475	Thoc2	6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2	THO complex 2	protein-coding	0.085000	0.616915	
mm_51438.1	chr6	80018919	80019119	+	1	NA	NA	NA	142	NM_001134743	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.015000	0.492537	49(GCTTTTAAACTG,+,0.00)
mm_3980.1	chr1	164249201	164249401	+	1	NA	NA	NA	255	NM_001276455	116914	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA	solute carrier family 19 (thiamine transporter), member 2	protein-coding	0.135000	0.721393	
mm_95163.1	chr11	37597079	37597279	+	1	NA	NA	NA	-61810	NR_131154	100039148	Mm.120467	NR_131154	ENSMUSG00000087388	Gm12128	OTTMUSG00000005422	predicted gene 12128	ncRNA	0.000000	0.457711	
mm_88748.1	chr10	80292374	80292574	+	1	NA	NA	NA	-35	NM_001310726	20054	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	0.105000	0.641791	
mm_108696.1	chr12	86946943	86947143	+	1	NA	NA	NA	2	NM_001289430	217732	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.085000	0.646766	
mm_115540.1	chr13	6648600	6648800	-	1	NA	NA	NA	71	NM_019703	56421	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.075000	0.646766	
mm_105976.1	chr11	115536152	115536352	-	1	NA	NA	NA	-22	NM_133354	170930	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	0.125000	0.696517	
mm_94853.1	chr11	23894685	23894885	+	1	NA	NA	NA	485	NM_172555	216578	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0.090000	0.676617	
mm_7116.1	chr1	90014519	90014719	-	1	NA	NA	NA	-42	NM_139152	208372	Mm.215164	NM_139152	ENSMUSG00000067081	Asb18	Asb-18	ankyrin repeat and SOCS box-containing 18	protein-coding	0.015000	0.552239	-58(CTATTTATAGCC,+,0.00)
mm_105064.1	chr11	100720018	100720218	-	1	NA	NA	NA	6268	NM_029307	75482	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.035000	0.567164	
mm_83990.1	chr9	57440007	57440207	-	1	NA	NA	NA	7	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.065000	0.587065	-20(TCATTTAGAGCC,+,0.00)
mm_16819.1	chr2	11425604	11425804	-	1	NA	NA	NA	-27204	NR_040615	77543	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.005000	0.492537	-32(GGCTATAAAAGC,-,0.00)
mm_167074.1	chr7	100498652	100498852	+	1	NA	NA	NA	5394	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.035000	0.582090	
mm_163987.1	chr14	61768004	61768204	+	1	NA	NA	NA	-85731	NR_028264	668253	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.010000	0.452736	
mm_168661.1	chr11	88980603	88980803	+	1	NA	NA	NA	6768	NM_016706	12812	Mm.268004	NM_016706	ENSMUSG00000033983	Coil	C79982|Cln80|p80|p80-coilin	coilin	protein-coding	0.005000	0.517413	
mm_6344.1	chr1	71638463	71638663	-	1	NA	NA	NA	14671	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.030000	0.472637	
mm_111638.1	chr12	102647651	102647851	-	1	NA	NA	NA	37269	NR_035457	100316812		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.005000	0.402985	
mm_137255.1	chr17	24549929	24550129	+	1	NA	NA	NA	79	NM_013630	18763	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystic kidney disease 1 homolog	protein-coding	0.075000	0.701493	
mm_153751.1	chr19	45075048	45075248	-	1	NA	NA	NA	-991	NM_178929	107250	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.085000	0.631841	-90(GCTTTTAGGCAA,+,0.00),-66(GCTTATATAGGC,+,0.00)
mm_88491.1	chr10	77726351	77726551	+	1	NA	NA	NA	-35	NM_001205033	100502953	Mm.486157	NM_001205033	ENSMUSG00000096421	Gm10100	ENSMUSG00000061452	predicted gene 10100	protein-coding	0.010000	0.582090	
mm_127963.1	chr15	11987593	11987793	-	1	NA	NA	NA	8314	NM_011294	20024	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.000000	0.393035	
mm_140566.1	chr17	8524765	8524965	-	1	NA	NA	NA	-1936	NM_001290707	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.075000	0.671642	
mm_122701.1	chr14	52160827	52161027	-	1	NA	NA	NA	36312	NM_033618	114741	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	0.010000	0.383085	
mm_58603.1	chr7	5051436	5051636	+	1	NA	NA	NA	4	NM_026900	68992	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	0.125000	0.716418	
mm_129769.1	chr15	82707266	82707466	-	1	NA	NA	NA	-17308	NR_033515	627860	Mm.486636	NR_033515		Cyp2d37-ps	EG627860|Gm6800	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene	pseudo	0.000000	0.502488	-33(TCCTTTATAAGG,-,0.00),-31(CTTTATAAGGCT,+,0.00)
mm_163479.1	chr12	105678367	105678567	+	1	NA	NA	NA	6774	NM_029654	76559	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	0.025000	0.522388	-94(GCCTTGTTAAGG,-,0.00)
mm_16310.1	chr2	174297240	174297440	+	1	NA	NA	NA	-519	NM_001077507	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.080000	0.611940	
mm_93139.1	chr10	92164649	92164849	-	1	NA	NA	NA	429	NR_028262	110333	Mm.429764	NR_028262		Rmst	100041799|AI853140|C230053E11Rik|D930049J19Rik|Dmt2|Gm3515|M2|Ncrms	rhabdomyosarcoma 2 associated transcript (non-coding RNA)	ncRNA	0.015000	0.507463	
mm_147644.1	chr18	60273172	60273372	-	1	NA	NA	NA	-5	NM_001034859	225594	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	0.000000	0.497512	
mm_97716.1	chr11	80183796	80183996	+	1	NA	NA	NA	24	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.065000	0.611940	
mm_52547.1	chr6	115935023	115935223	+	1	NA	NA	NA	3196	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.025000	0.492537	
mm_142490.1	chr17	45828768	45828968	-	1	NA	NA	NA	-95024	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0.015000	0.487562	-19(AGCTCTTAAAGA,-,0.00)
mm_126307.1	chr15	79533741	79533941	+	1	NA	NA	NA	-924	NM_152806	67040	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.015000	0.522388	-71(GGCTCGATAAGG,-,0.00)
mm_37164.1	chr4	117156033	117156233	-	1	NA	NA	NA	-1	NM_009098	20116	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	0.110000	0.671642	
mm_119633.1	chr14	51853670	51853870	+	1	NA	NA	NA	2	NM_053111	93719	Mm.221324	NM_053111	ENSMUSG00000062148	Ear6	-	eosinophil-associated, ribonuclease A family, member 6	protein-coding	0.010000	0.537313	
mm_18325.1	chr2	57122002	57122202	-	1	NA	NA	NA	1901	NM_001139509	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.015000	0.258706	
mm_19810.1	chr2	110314448	110314648	-	1	NA	NA	NA	-8823	NM_130452	170442	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	0.015000	0.517413	
mm_46798.1	chr5	112966295	112966495	-	1	NA	NA	NA	49143	NM_001285806	320129	Mm.285619	NM_177078	ENSMUSG00000042249	Grk3	4833444A01Rik|AI851927|AW551196|Adrbk-2|Adrbk2|Bark-2	G protein-coupled receptor kinase 3	protein-coding	0.005000	0.393035	-72(TGCTCTATAGGC,-,0.00)
mm_81864.1	chr9	118926546	118926746	+	1	NA	NA	NA	110	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.190000	0.825871	
mm_3921.1	chr1	162570527	162570727	+	1	NA	NA	NA	-201	NM_016796	53330	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e	vesicle-associated membrane protein 4	protein-coding	0.120000	0.741294	
mm_7041.1	chr1	87101533	87101733	-	1	NA	NA	NA	-27	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.005000	0.577114	-9(CCCTTTATAGCC,+,0.00)
mm_36766.1	chr4	101390464	101390664	-	1	NA	NA	NA	-28725	NM_001177602	11639	Mm.42040	NM_009647	ENSMUSG00000028527	Ak4	AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e	adenylate kinase 4	protein-coding	0.015000	0.487562	
mm_72882.1	chr8	89003758	89003958	+	1	NA	NA	NA	-20877	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.020000	0.472637	
mm_11947.1	chr2	52927527	52927727	+	1	NA	NA	NA	69759	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.010000	0.388060	
mm_6856.1	chr1	84262463	84262663	-	1	NA	NA	NA	22082	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.000000	0.328358	
mm_134558.1	chr16	20292038	20292238	-	1	NA	NA	NA	10224	NM_001005767	381038	Mm.371737	NM_001005767	ENSMUSG00000033918	Parl	D16Ertd607e|PRO2207|PSARL1|PSENIP2|Psarl	presenilin associated, rhomboid-like	protein-coding	0.020000	0.383085	
mm_116888.1	chr13	55321804	55322004	-	1	NA	NA	NA	76	NM_009000	19336	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	0.140000	0.716418	
mm_24760.1	chr3	95496634	95496834	+	1	NA	NA	NA	-2476	NM_007802	13038	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.010000	0.412935	
mm_31982.1	chr4	89123239	89123439	+	1	NA	NA	NA	-14031	NM_024433	66902	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	0.025000	0.537313	
mm_13999.1	chr2	121956359	121956559	+	1	NA	NA	NA	-367	NM_008545	17147	Mm.389349	NM_008545	ENSMUSG00000074881	Mageb3	Mage-b3|Mage-ps1|Mage-rs3|Smage3	melanoma antigen, family B, 3	protein-coding	0.080000	0.676617	
mm_159464.1	chr4	3871786	3871986	-	1	NA	NA	NA	219	NM_020021	17451	Mm.459300	NM_020021	ENSMUSG00000078365	Mos	c-mos	Moloney sarcoma oncogene	protein-coding	0.010000	0.492537	
mm_147389.1	chr18	44173620	44173820	-	1	NA	NA	NA	1353	NM_183123	77424	Mm.99224	NM_183123	ENSMUSG00000053729	Spinkl	9530002K18Rik	serine protease inhibitor, Kazal type-like	protein-coding	0.005000	0.293532	
mm_75290.1	chr8	41041797	41041997	-	1	NA	NA	NA	34	NM_001005865	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.030000	0.522388	
mm_110765.1	chr12	70227564	70227764	-	1	NA	NA	NA	19	NM_133198	110095	Mm.256926	NM_133198	ENSMUSG00000021069	Pygl	-	liver glycogen phosphorylase	protein-coding	0.065000	0.696517	
mm_125844.1	chr15	74958795	74958995	+	1	NA	NA	NA	3789	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.020000	0.542289	
mm_75469.1	chr8	47990412	47990612	-	1	NA	NA	NA	39	NM_133791	52357	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.135000	0.761194	
mm_161640.1	chr16	94570753	94570953	+	1	NA	NA	NA	-54	NM_001113389	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.070000	0.691542	
mm_164597.1	chr17	28513890	28514090	+	1	NA	NA	NA	-16871	NM_026290	67645	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.010000	0.582090	
mm_144268.1	chr18	11053968	11054168	+	1	NA	NA	NA	-1501	NR_105023	68434	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0.070000	0.587065	
mm_63813.1	chr7	133747493	133747693	+	1	NA	NA	NA	12676	NM_001286030	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.025000	0.577114	
mm_142927.1	chr17	53846282	53846482	-	1	NA	NA	NA	-424	NM_026935	69083	Mm.19320	NM_026935	ENSMUSG00000023122	Sult1c2	1810008N17Rik|ST1C1|ST1C2|Sult1c1	sulfotransferase family, cytosolic, 1C, member 2	protein-coding	0.015000	0.437811	
mm_60005.1	chr7	30720186	30720386	+	1	NA	NA	NA	8077	NM_001290627	11944	Mm.12821	NM_018731	ENSMUSG00000005553	Atp4a	-	ATPase, H+/K+ exchanging, gastric, alpha polypeptide	protein-coding	0.035000	0.592040	
mm_87715.1	chr10	60105804	60106004	+	1	NA	NA	NA	-353	NM_052994	94214	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.020000	0.577114	-6(CCTTTTAGACAC,+,0.00)
mm_56866.1	chr6	118419315	118419515	-	1	NA	NA	NA	2	NM_194339	213895	Mm.25269	NM_194339	ENSMUSG00000030138	Bms1	AA408648|AU020092|AU043373|BB007109|BC030906|Bms1l|mKIAA0187	BMS1, ribosome biogenesis factor	protein-coding	0.115000	0.626866	
mm_63845.1	chr7	135652280	135652480	+	1	NA	NA	NA	-66	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.025000	0.407960	-6(TTTTTTAAAGAG,+,0.00)
mm_139410.1	chr17	52602317	52602517	+	1	NA	NA	NA	-292	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.100000	0.676617	
mm_147882.1	chr18	64660896	64661096	-	1	NA	NA	NA	4	NM_001001488	54670	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0.100000	0.751244	
mm_12276.1	chr2	68999870	69000070	+	1	NA	NA	NA	-135830	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.015000	0.323383	
mm_83411.1	chr9	44802857	44803057	-	1	NA	NA	NA	-6	NM_138951	192653	Mm.325487	NM_138951	ENSMUSG00000039438	Ttc36	-	tetratricopeptide repeat domain 36	protein-coding	0.015000	0.562189	
mm_54949.1	chr6	48647988	48648188	-	1	NA	NA	NA	727	NM_212486	243374	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	0.015000	0.507463	
mm_31651.1	chr4	59727949	59728149	+	1	NA	NA	NA	55806	NM_001013577	66209	Mm.51988	NM_001013577	ENSMUSG00000038544	Inip	1110054O05Rik|2610312O17Rik|AA399876|Ssbip1	INTS3 and NABP interacting protein	protein-coding	0.035000	0.557214	
mm_134736.1	chr16	22899337	22899537	-	1	NA	NA	NA	-5051	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.020000	0.467662	
mm_113461.1	chr13	35968369	35968569	+	1	NA	NA	NA	563	NM_029628	76487	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	0.050000	0.616915	
mm_155903.1	chrX	101679969	101680169	+	1	NA	NA	NA	39851	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.000000	0.358209	
mm_141353.1	chr17	28689661	28689861	-	1	NA	NA	NA	226	NM_001290320	224661		NM_146076	ENSMUSG00000036196	Slc26a8	-	solute carrier family 26, member 8	protein-coding	0.115000	0.736318	
mm_89437.1	chr10	91165904	91166104	+	1	NA	NA	NA	4546	NM_001283048	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.000000	0.368159	
mm_85777.1	chr9	109057619	109057819	-	1	NA	NA	NA	1532	NM_001012236	22040	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	0.015000	0.447761	
mm_170945.1	chr2	51876417	51876617	+	1	NA	NA	NA	58127	NM_001141982	71684	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	0.030000	0.517413	
mm_41791.1	chr5	103752977	103753177	+	1	NA	NA	NA	-1085	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.020000	0.477612	
mm_86634.1	chr10	14046079	14046279	+	1	NA	NA	NA	79800	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.010000	0.398010	
mm_112171.1	chr12	113419900	113420100	-	1	NA	NA	NA	-69565	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.477612	52(CCATTAATAGAA,+,0.00)
mm_21555.1	chr2	164079470	164079670	-	1	NA	NA	NA	5392	NM_021420	58231	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.015000	0.462687	
mm_76414.1	chr8	84937285	84937485	-	1	NA	NA	NA	-32	NM_019945	56527	Mm.154614	NM_019945	ENSMUSG00000053693	Mast1	9430008B02Rik|SAST|SAST170	microtubule associated serine/threonine kinase 1	protein-coding	0.120000	0.781095	
mm_39944.1	chr5	31872982	31873182	+	1	NA	NA	NA	175032	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.000000	0.318408	
mm_31670.1	chr4	60005397	60005597	+	1	NA	NA	NA	1948	NM_001081285	620807	Mm.464562	NM_001081285	ENSMUSG00000078689	Mup6	Gm12544|Mup2|OTTMUSG00000007423	major urinary protein 6	protein-coding	0.010000	0.353234	
mm_53844.1	chr6	148983755	148983955	+	1	NA	NA	NA	-37423	NM_019643	56306	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Tera	family with sequence similarity 60, member A	protein-coding	0.000000	0.517413	-34(CAGTATAAAAGG,-,0.00)
mm_96719.1	chr11	69665556	69665756	+	1	NA	NA	NA	514	NM_001291058	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.015000	0.582090	
mm_63931.1	chr7	139482291	139482491	+	1	NA	NA	NA	93282	NM_001127363	212111	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.010000	0.467662	
mm_163470.1	chr12	103338318	103338518	-	1	NA	NA	NA	17583	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.015000	0.547264	-16(TCTTATATGGTC,+,0.00)
mm_137003.1	chr17	17491423	17491623	+	1	NA	NA	NA	88837	NM_025681	66643	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.030000	0.512438	
mm_98648.1	chr11	96251146	96251346	+	1	NA	NA	NA	-414	NR_037977	193022	Mm.169508	NR_037977		Gm53	-	predicted gene 53	ncRNA	0.030000	0.512438	
mm_84094.1	chr9	58247033	58247233	-	1	NA	NA	NA	2653	NM_178087	18854	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	0.065000	0.597015	
mm_21893.1	chr2	166155501	166155701	-	1	NA	NA	NA	82	NM_001252579	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.075000	0.601990	
mm_110564.1	chr12	55821004	55821204	-	1	NA	NA	NA	412	NM_019994	56784	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0.110000	0.676617	
mm_62686.1	chr7	110023014	110023214	+	1	NA	NA	NA	4689	NM_181517	233726	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	0.030000	0.407960	
mm_126552.1	chr15	82127859	82128059	+	1	NA	NA	NA	-16	NR_137170	76457	Mm.440373	NM_172428	ENSMUSG00000068114	Ccdc134	2310042L06Rik|AW208859	coiled-coil domain containing 134	protein-coding	0.095000	0.686567	
mm_154967.1	chrX	37126686	37126886	+	1	NA	NA	NA	23	NM_025937	67050	Mm.55422	NM_025937	ENSMUSG00000016409	Nkap	2610020O08Rik|AA987160|AI849147|AL024236	NFKB activating protein	protein-coding	0.035000	0.482587	
mm_75855.1	chr8	70699745	70699945	-	1	NA	NA	NA	2106	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.130000	0.661692	
mm_130636.1	chr15	100486518	100486718	-	1	NA	NA	NA	8621	NM_153407	207785	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	0.015000	0.527363	
mm_38370.1	chr4	138396312	138396512	-	1	NA	NA	NA	46	NM_001081672	625638	Mm.379091	NM_001081672	ENSMUSG00000078235	Fam43b	OTTMUSG00000009974	family with sequence similarity 43, member B	protein-coding	0.065000	0.646766	
mm_108415.1	chr12	81959027	81959227	+	1	NA	NA	NA	99097	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	0.000000	0.298507	-55(GTATATAAAAGG,-,0.00),58(TTTTTTAAAGCT,+,0.00)
mm_164540.1	chr17	7879763	7879963	+	1	NA	NA	NA	-46137	NM_145968	72536	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik	T cell activation Rho GTPase activating protein	protein-coding	0.010000	0.422886	
mm_47058.1	chr5	116381551	116381751	-	1	NA	NA	NA	41213	NM_030704	80888	Mm.21549	NM_030704	ENSMUSG00000041548	Hspb8	AU018630|AW413033|Cryac|D5Ucla4|E2IG1|H11|H11K|HSP20-like|HSP22	heat shock protein 8	protein-coding	0.025000	0.537313	
mm_155643.1	chrX	85269434	85269634	+	1	NA	NA	NA	19857	NM_028046	71996	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	0.035000	0.572139	
mm_173136.1	chrX	20617727	20617927	+	1	NA	NA	NA	68	NM_145627	236732	Mm.279194	NM_145627	ENSMUSG00000031060	Rbm10	E430039K10Rik	RNA binding motif protein 10	protein-coding	0.085000	0.621891	
mm_139359.1	chr17	50528859	50529059	+	1	NA	NA	NA	19412	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.015000	0.417910	
mm_46519.1	chr5	105328860	105329060	-	1	NA	NA	NA	17512	NM_001039647	634650	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	0.000000	0.333333	
mm_29165.1	chr3	106483336	106483536	-	1	NA	NA	NA	986	NM_001278941	72121	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.010000	0.432836	
mm_83865.1	chr9	54824683	54824883	-	1	NA	NA	NA	-38972	NM_022655	64602	Mm.208991	NM_022655	ENSMUSG00000032293	Ireb2	D9Ertd85e|Irp2	iron responsive element binding protein 2	protein-coding	0.015000	0.517413	
mm_122268.1	chr14	34358160	34358360	-	1	NA	NA	NA	-2867	NM_183278	69134	Mm.27156	NM_183278	ENSMUSG00000043681	Fam25c	2200001I15Rik|Fam25	family with sequence similarity 25, member C	protein-coding	0.005000	0.517413	
mm_155775.1	chrX	96341638	96341838	+	1	NA	NA	NA	26181	NM_001310754	245525	Mm.166749	NM_172931	ENSMUSG00000045802	Hsf3	B230358A15Rik|HSF 3|HSTF 3	heat shock transcription factor 3	protein-coding	0.000000	0.308458	
mm_156243.1	chrX	136245046	136245246	+	1	NA	NA	NA	66	NM_011712	22381	Mm.512	NM_011712	ENSMUSG00000042712	Wbp5	AL024233|Tceal9	WW domain binding protein 5	protein-coding	0.045000	0.542289	
mm_10605.1	chr2	18906250	18906450	+	1	NA	NA	NA	91771	NM_008845	18718	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.020000	0.537313	
mm_151224.1	chr19	53700776	53700976	+	1	NA	NA	NA	23570	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.000000	0.303483	
mm_152461.1	chr19	10881597	10881797	-	1	NA	NA	NA	46	NM_134142	68539	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	0.080000	0.606965	
mm_116133.1	chr13	28953333	28953533	-	1	NA	NA	NA	249	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.065000	0.557214	
mm_12286.1	chr2	69008510	69008710	+	1	NA	NA	NA	-127190	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.005000	0.373134	
mm_24700.1	chr3	95126110	95126310	+	1	NA	NA	NA	1696	NM_016712	50874	Mm.71935	NM_016712	ENSMUSG00000005628	Tmod4	MTMOD|Sk-Tmod	tropomodulin 4	protein-coding	0.005000	0.487562	
mm_97623.1	chr11	78957416	78957616	+	1	NA	NA	NA	27408	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.030000	0.562189	
mm_44777.1	chr5	32122418	32122618	-	1	NA	NA	NA	-13954	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.005000	0.472637	49(GTCCCTTAAAGG,-,0.00),51(CCCTTAAAGGAC,+,0.00)
mm_128774.1	chr15	66702498	66702698	-	1	NA	NA	NA	31828	NM_009375	21819	Mm.441333	NM_009375	ENSMUSG00000053469	Tg	Tgn|cog	thyroglobulin	protein-coding	0.010000	0.437811	
mm_39470.1	chr5	19907427	19907627	+	1	NA	NA	NA	9	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.010000	0.542289	-74(GGCTTTTAAGGG,-,0.00),-73(GCTTTTAAGGGA,+,0.00)
mm_91942.1	chr10	60831362	60831562	-	1	NA	NA	NA	119	NM_029770	107449	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0.155000	0.751244	
mm_89202.1	chr10	86348885	86349085	+	1	NA	NA	NA	48573	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.015000	0.432836	-82(TGCCATATAAAC,-,0.00),-80(CCATATAAACAC,+,0.00)
mm_142130.1	chr17	35901456	35901656	-	1	NA	NA	NA	-4178	NM_001033630	69662	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	0.035000	0.611940	
mm_117469.1	chr13	76056246	76056446	-	1	NA	NA	NA	650	NM_175495	238725	Mm.167172	NM_175495	ENSMUSG00000045509	Gpr150	C030001A19Rik|PGR11	G protein-coupled receptor 150	protein-coding	0.075000	0.691542	
mm_46747.1	chr5	111417050	111417250	-	1	NA	NA	NA	-1016	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.125000	0.746269	
mm_72028.1	chr8	70758021	70758221	+	1	NA	NA	NA	2800	NM_183170	234384	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0.040000	0.587065	
mm_57512.1	chr6	125481684	125481884	-	1	NA	NA	NA	12971	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.015000	0.527363	
mm_14786.1	chr2	145860139	145860339	+	1	NA	NA	NA	-43002	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.055000	0.577114	88(CGCTATTAATAG,-,0.00)
mm_31881.1	chr4	82065730	82065930	+	1	NA	NA	NA	450	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	0.010000	0.472637	
mm_159615.1	chr4	133212539	133212739	-	1	NA	NA	NA	-103	NM_008154	14748	Mm.4721	NM_008154	ENSMUSG00000049649	Gpr3	Gpcr20|Gpcr21|Gpcr3	G-protein coupled receptor 3	protein-coding	0.135000	0.741294	
mm_5936.1	chr1	55363369	55363569	-	1	NA	NA	NA	0	NM_029267	75388	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	bol, boule-like (Drosophila)	protein-coding	0.180000	0.820896	
mm_22491.1	chr3	5860593	5860793	+	1	NA	NA	NA	-284445	NM_001163305	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.095000	0.666667	
mm_52906.1	chr6	122811105	122811305	+	1	NA	NA	NA	-8979	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.070000	0.646766	
mm_82639.1	chr9	21991998	21992198	-	1	NA	NA	NA	-2645	NM_023622	71746	Mm.110594	NM_023622	ENSMUSG00000040146	Rgl3	1300003D20Rik|mFLJ00153	ral guanine nucleotide dissociation stimulator-like 3	protein-coding	0.030000	0.552239	
mm_43357.1	chr5	135187451	135187651	+	1	NA	NA	NA	228	NM_011714	22385	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.145000	0.781095	
mm_72346.1	chr8	79639406	79639606	+	1	NA	NA	NA	-170	NM_001256033	73945	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.140000	0.741294	
mm_119566.1	chr14	49066626	49066826	+	1	NA	NA	NA	-59	NM_207214	105504	Mm.31607	NM_207214	ENSMUSG00000061244	Exoc5	AI447711|AI448003|Gm76|PRO1912|SEC10|Sec10l1	exocyst complex component 5	protein-coding	0.055000	0.572139	
mm_101536.1	chr11	33513577	33513777	-	1	NA	NA	NA	69	NR_110973	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.155000	0.800995	
mm_129504.1	chr15	78924890	78925090	-	1	NA	NA	NA	-1735	NM_008495	16852	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	0.000000	0.333333	
mm_137193.1	chr17	23824372	23824572	+	1	NA	NA	NA	4637	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.000000	0.452736	
mm_19839.1	chr2	112510131	112510331	-	1	NA	NA	NA	17267	NM_028844	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.015000	0.472637	-36(CTCCTTTAAAGC,-,0.00),-35(TCCTTTAAAGCT,+,0.00)
mm_58154.1	chr6	142386895	142387095	-	1	NA	NA	NA	92	NM_001204906	19691	Mm.27407	NM_023042	ENSMUSG00000030243	Recql	RecQ1	RecQ protein-like	protein-coding	0.120000	0.691542	
mm_54355.1	chr6	31088118	31088318	-	1	NA	NA	NA	-25125	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.010000	0.502488	-33(GGATTTAAAAGA,-,0.00)
mm_161763.1	chr17	36058322	36058522	-	1	NA	NA	NA	-51	NM_001199967	100529082	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	ENSMUSG00000079492	predicted gene 11127	protein-coding	0.005000	0.482587	-22(CCCTAGAAAAGG,-,0.00)
mm_91952.1	chr10	61099734	61099934	-	1	NA	NA	NA	10503	NM_025273	13180	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.015000	0.477612	66(CCCGCTAAAAGG,-,0.00)
mm_1718.1	chr1	75247093	75247293	+	1	NA	NA	NA	10491	NM_001159885	56812	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.015000	0.552239	
mm_1012.1	chr1	58728521	58728721	+	1	NA	NA	NA	-1931	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.010000	0.462687	
mm_112466.1	chr13	5867823	5868023	+	1	NA	NA	NA	6434	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.005000	0.492537	
mm_9778.1	chr1	181144104	181144304	-	1	NA	NA	NA	0	NM_026171	67459	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	0.110000	0.671642	
mm_141044.1	chr17	25408106	25408306	-	1	NA	NA	NA	25577	NM_021415	58226	Mm.268378	NM_021415	ENSMUSG00000024112	Cacna1h	Cav3.2|MNCb-1209|alpha13.2	calcium channel, voltage-dependent, T type, alpha 1H subunit	protein-coding	0.005000	0.447761	
mm_127900.1	chr15	9507019	9507219	-	1	NA	NA	NA	22757	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.000000	0.343284	
mm_130966.1	chr15	103318168	103318368	-	1	NA	NA	NA	-7830	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.005000	0.587065	
mm_79207.1	chr9	48991896	48992096	+	1	NA	NA	NA	6611	NM_175482	235323	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	0.010000	0.477612	-29(AGCTCTTAAAAG,-,0.00),-28(GCTCTTAAAAGA,-,0.00)
mm_95141.1	chr11	35121034	35121234	+	1	NA	NA	NA	-322	NM_011412	20564	Mm.478604	NM_011412	ENSMUSG00000056427	Slit3	Slil2|Slit1|b2b2362.1Clo	slit homolog 3 (Drosophila)	protein-coding	0.080000	0.706468	
mm_104538.1	chr11	96350094	96350294	-	1	NA	NA	NA	-1438	NM_134032	103889	Mm.281153	NM_134032	ENSMUSG00000075588	Hoxb2	AI894218|Hox-2.8|Hoxbes2	homeobox B2	protein-coding	0.025000	0.557214	-83(TCCCTTAAAAAG,-,0.00),-81(CCTTAAAAAGGC,+,0.00)
mm_122394.1	chr14	40966856	40967056	-	1	NA	NA	NA	-60	NM_145928	52588	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.125000	0.756219	
mm_123299.1	chr14	61633036	61633236	-	1	NA	NA	NA	-1026	NR_029733	387174		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0.010000	0.308458	
mm_153030.1	chr19	31764877	31765077	-	1	NA	NA	NA	56	NM_001013833	19091	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0.050000	0.606965	-36(CCTTTTAGACGC,+,0.00)
mm_155889.1	chrX	101649294	101649494	+	1	NA	NA	NA	9176	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.005000	0.353234	
mm_58902.1	chr7	17163268	17163468	+	1	NA	NA	NA	12968	NM_054059	384557	Mm.486145	NM_054059	ENSMUSG00000053228	Ceacam3	EG384557|Psg24|cea12	carcinoembryonic antigen-related cell adhesion molecule 3	protein-coding	0.000000	0.402985	
mm_75625.1	chr8	64689383	64689583	-	1	NA	NA	NA	3626	NM_013494	12876	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|R74677|fat	carboxypeptidase E	protein-coding	0.010000	0.567164	
mm_166798.1	chr7	3330811	3331011	+	1	NA	NA	NA	-5674	NM_133189	81904	Mm.214994	NM_133189	ENSMUSG00000069806	Cacng7	-	calcium channel, voltage-dependent, gamma subunit 7	protein-coding	0.015000	0.517413	
mm_28565.1	chr3	93444795	93444995	-	1	NA	NA	NA	2565	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.060000	0.626866	
mm_30091.1	chr3	138193738	138193938	-	1	NA	NA	NA	-7125	NM_001163386	67741	Mm.383221	NM_001163385	ENSMUSG00000012042	4930579F01Rik	-	RIKEN cDNA 4930579F01 gene	protein-coding	0.015000	0.512438	
mm_93521.1	chr10	115288229	115288429	-	1	NA	NA	NA	27262	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.020000	0.447761	
mm_169562.1	chr15	14697319	14697519	-	1	NA	NA	NA	-1523744	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.010000	0.467662	31(CCTTTTATAAGT,+,0.00)
mm_79792.1	chr9	63876097	63876297	+	1	NA	NA	NA	-118203	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.040000	0.621891	
mm_52880.1	chr6	122513339	122513539	+	1	NA	NA	NA	-145	NM_001347434	50530	Mm.41931	NM_015776	ENSMUSG00000030116	Mfap5	MAGP-2|MFAP-5	microfibrillar associated protein 5	protein-coding	0.010000	0.532338	
mm_128381.1	chr15	42676854	42677054	-	1	NA	NA	NA	23	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.035000	0.547264	
mm_31605.1	chr4	58285966	58286166	+	1	NA	NA	NA	104	NM_010944	18198	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	0.020000	0.398010	
mm_95318.1	chr11	46436941	46437141	+	1	NA	NA	NA	80	NM_025426	66213	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	0.115000	0.676617	
mm_113705.1	chr13	43365390	43365590	+	1	NA	NA	NA	-5226	NM_178848	68346	Mm.35325	NM_178848	ENSMUSG00000054021	Sirt5	0610012J09Rik|1500032M05Rik|AV001953	sirtuin 5	protein-coding	0.075000	0.671642	
mm_66904.1	chr7	59980841	59981041	-	1	NA	NA	NA	-2085	NR_028529	100217429		NR_028529		Snord64	MBII-13	small nucleolar RNA, C/D box 64	snoRNA	0.010000	0.348259	
mm_108840.1	chr12	97124416	97124616	+	1	NA	NA	NA	-1077294	NR_103800	69423	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0.020000	0.437811	
mm_116763.1	chr13	52573145	52573345	-	1	NA	NA	NA	-20	NR_046069	100040572	Mm.278873	NR_046069		Gm2848	-	predicted gene 2848	ncRNA	0.025000	0.577114	
mm_115624.1	chr13	12104422	12104622	-	1	NA	NA	NA	2423	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.005000	0.447761	
mm_70002.1	chr7	142387733	142387933	-	1	NA	NA	NA	37	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.105000	0.621891	-30(CTGCCTATAAGC,-,0.00)
mm_61756.1	chr7	82771419	82771619	+	1	NA	NA	NA	-15875	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.040000	0.636816	
mm_167356.1	chr8	84198675	84198875	+	1	NA	NA	NA	-9743	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.005000	0.542289	
mm_121574.1	chr14	122891780	122891980	+	1	NA	NA	NA	21285	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.010000	0.512438	
mm_145414.1	chr18	57878529	57878729	+	1	NA	NA	NA	-49	NM_009194	20496	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0.165000	0.766169	-33(GCCTTTAAACCG,+,0.00)
mm_159499.1	chr4	43668816	43669016	+	1	NA	NA	NA	-55	NM_001085508	242409	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	0.025000	0.547264	
mm_164613.1	chr17	31161334	31161534	-	1	NA	NA	NA	3619	NM_009362	21784	Mm.2854	NM_009362	ENSMUSG00000024032	Tff1	Bcei|PS2	trefoil factor 1	protein-coding	0.015000	0.417910	
mm_83911.1	chr9	56360896	56361096	-	1	NA	NA	NA	57054	NM_172924	244895	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	0.010000	0.447761	
mm_9235.1	chr1	171287823	171288023	-	1	NA	NA	NA	38	NM_013919	30941	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	0.085000	0.681592	
mm_171757.1	chr5	105093004	105093204	-	1	NA	NA	NA	17188	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.035000	0.616915	
mm_78016.1	chr9	13662094	13662294	+	1	NA	NA	NA	-266	NM_173776	270118	Mm.116898	NM_173776	ENSMUSG00000031925	Maml2	5930431H10|BC032967	mastermind like 2 (Drosophila)	protein-coding	0.010000	0.333333	
mm_25140.1	chr3	102520159	102520359	+	1	NA	NA	NA	50340	NM_013609	18049	Mm.1259	NM_013609	ENSMUSG00000027859	Ngf	Ngfb	nerve growth factor	protein-coding	0.035000	0.552239	
mm_40575.1	chr5	63840177	63840377	+	1	NA	NA	NA	27782	NM_029554	76261	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.025000	0.472637	
mm_75424.1	chr8	46941203	46941403	-	1	NA	NA	NA	-45584	NM_177304	320981	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.020000	0.467662	
mm_134913.1	chr16	30283159	30283359	-	1	NA	NA	NA	-5	NM_028973	74488	Mm.290677	NM_028973	ENSMUSG00000052316	Lrrc15	5430427N11Rik|LIB	leucine rich repeat containing 15	protein-coding	0.065000	0.646766	
mm_39794.1	chr5	30588105	30588305	+	1	NA	NA	NA	35	NM_010608	16527	Mm.439936	NM_010608	ENSMUSG00000049265	Kcnk3	TASK|Task-1|cTBAK-1	potassium channel, subfamily K, member 3	protein-coding	0.170000	0.840796	
mm_17240.1	chr2	25608327	25608527	-	1	NA	NA	NA	19	NM_001024616	227624	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	0.135000	0.741294	
mm_47734.1	chr5	130172479	130172679	-	1	NA	NA	NA	760	NM_001199059	56715	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.010000	0.532338	
mm_84864.1	chr9	78587908	78588108	-	1	NA	NA	NA	37	NM_172773	235504	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.080000	0.651741	
mm_88794.1	chr10	80644482	80644682	+	1	NA	NA	NA	12489	NM_145361	208198	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0.055000	0.661692	
mm_126161.1	chr15	78430022	78430222	+	1	NA	NA	NA	1558	NR_110357	72844	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	0.030000	0.562189	
mm_133543.1	chr16	91225318	91225518	+	1	NA	NA	NA	-132	NM_016967	50913	Mm.37289	NM_016967	ENSMUSG00000039830	Olig2	AI604895|Bhlhb1|Olg-2|Oligo2|RK17|bHLHe19	oligodendrocyte transcription factor 2	protein-coding	0.100000	0.686567	
mm_29238.1	chr3	107215868	107216068	-	1	NA	NA	NA	5764	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.005000	0.497512	
mm_52324.1	chr6	108836595	108836795	+	1	NA	NA	NA	8054	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.010000	0.402985	-29(CCTTTTATGGTC,+,0.00)
mm_30039.1	chr3	135691438	135691638	-	1	NA	NA	NA	9	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.125000	0.706468	
mm_97936.1	chr11	83648504	83648704	+	1	NA	NA	NA	774	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.025000	0.487562	
mm_128892.1	chr15	73185177	73185377	-	1	NA	NA	NA	-330	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.125000	0.701493	
mm_137547.1	chr17	27556883	27557083	+	1	NA	NA	NA	330	NM_001166477	111241	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1-rs1	ENSMUSG00000041059|Hmgi-rs1	high mobility group AT-hook I, related sequence 1	protein-coding	0.160000	0.796020	
mm_116313.1	chr13	37050196	37050396	-	1	NA	NA	NA	-52	NM_001166391	74145	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0.015000	0.422886	
mm_139269.1	chr17	48065204	48065404	+	1	NA	NA	NA	-24328	NM_026625	68224	Mm.138490	NM_026625	ENSMUSG00000021545	1700067P10Rik	-	RIKEN cDNA 1700067P10 gene	protein-coding	0.005000	0.522388	
mm_127068.1	chr15	97373884	97374084	+	1	NA	NA	NA	-126697	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.020000	0.492537	
mm_147301.1	chr18	39519193	39519393	-	1	NA	NA	NA	-32048	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.020000	0.547264	
mm_5612.1	chr1	39650866	39651066	-	1	NA	NA	NA	216	NM_170597	263764	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0.090000	0.691542	
mm_168045.1	chrY	90811312	90811512	+	1	NA	NA	NA	25970	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.010000	0.502488	
mm_136882.1	chr17	13008147	13008347	+	1	NA	NA	NA	408	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.080000	0.651741	
mm_94686.1	chr11	19924076	19924276	+	1	NA	NA	NA	-266	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.050000	0.601990	
mm_10490.1	chr2	14823983	14824183	+	1	NA	NA	NA	-9	NM_001252533	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.020000	0.467662	
mm_5458.1	chr1	36309521	36309721	-	1	NA	NA	NA	1888	NM_001172205	214855	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.005000	0.562189	
mm_133565.1	chr16	91399245	91399445	+	1	NA	NA	NA	-6890	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.020000	0.298507	
mm_60443.1	chr7	44476985	44477185	+	1	NA	NA	NA	6738	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.412935	
mm_9654.1	chr1	177763326	177763526	-	1	NA	NA	NA	33083	NM_007422	11566	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.010000	0.373134	
mm_171303.1	chr3	93908037	93908237	+	1	NA	NA	NA	35406	NM_001163730	668359	Mm.80593	NM_001163730	ENSMUSG00000094328	Gm9125	EG668359	predicted gene 9125	protein-coding	0.005000	0.437811	-34(GCCTATATAAAC,-,0.00)
mm_23092.1	chr3	37063514	37063714	+	1	NA	NA	NA	-42	NM_009350	21744	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	0.110000	0.706468	
mm_25190.1	chr3	103484634	103484834	+	1	NA	NA	NA	-90548	NM_001276679	54524	Mm.88818	NM_018800	ENSMUSG00000027849	Syt6	3110037A08Rik|AW048930|sytVI	synaptotagmin VI	protein-coding	0.005000	0.507463	-42(TCTTAAAAAGTG,+,0.00)
mm_102840.1	chr11	69350617	69350817	-	1	NA	NA	NA	9948	NR_027827	80515	Mm.5324	NM_020591	ENSMUSG00000043419	Chd3os	2310043C11Rik|A030009H04Rik|AA589459|AB041807|MNCb-2875|RNF21	chromodomain helicase DNA binding protein 3, opposite strand	ncRNA	0.015000	0.537313	
mm_89953.1	chr10	111293504	111293704	+	1	NA	NA	NA	-5075	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.015000	0.373134	
mm_100630.1	chr11	121706499	121706699	+	1	NA	NA	NA	4172	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.010000	0.537313	
mm_5319.1	chr1	22783528	22783728	-	1	NA	NA	NA	22096	NM_001012625	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.025000	0.477612	
mm_100916.1	chr11	6274724	6274924	-	1	NA	NA	NA	13	NM_134020	103694	Mm.254495	NM_134020	ENSMUSG00000004394	Tmed4	1110014L17Rik|AI326346	transmembrane p24 trafficking protein 4	protein-coding	0.085000	0.621891	
mm_136969.1	chr17	15731877	15732077	+	1	NA	NA	NA	27010	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.020000	0.402985	
mm_88295.1	chr10	75303521	75303721	+	1	NA	NA	NA	-13256	NM_009630	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.025000	0.522388	
mm_118146.1	chr13	105054737	105054937	-	1	NA	NA	NA	93	NM_029879	52882	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.065000	0.582090	
mm_142556.1	chr17	46637147	46637347	-	1	NA	NA	NA	-7743	NM_175168	71461	Mm.181833	NM_175168	ENSMUSG00000023972	Ptk7	8430404F20Rik|chz|mPTK7/CCK4	PTK7 protein tyrosine kinase 7	protein-coding	0.020000	0.512438	
mm_155671.1	chrX	90744645	90744845	+	1	NA	NA	NA	-147397	NM_001101450	212952	Mm.477436	NM_001101450	ENSMUSG00000091497	Gm44	-	predicted gene 44	protein-coding	0.005000	0.462687	
mm_41085.1	chr5	87680717	87680917	+	1	NA	NA	NA	14609	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.427861	
mm_113355.1	chr13	31899528	31899728	+	1	NA	NA	NA	92982	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.015000	0.547264	
mm_29510.1	chr3	116253403	116253603	-	1	NA	NA	NA	-19	NM_022427	64378	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.010000	0.482587	
mm_84797.1	chr9	77229366	77229566	-	1	NA	NA	NA	118404	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.015000	0.393035	
mm_61664.1	chr7	80778523	80778723	+	1	NA	NA	NA	24708	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.025000	0.472637	
mm_158235.1	chrX	106485102	106485302	-	1	NA	NA	NA	27	NM_001007580	333564	Mm.298000	NM_001007580	ENSMUSG00000033737	Fndc3c1	Fndc3c|Gm784	fibronectin type III domain containing 3C1	protein-coding	0.055000	0.611940	
mm_90478.1	chr10	127866432	127866632	+	1	NA	NA	NA	56	NM_145424	216454	Mm.214923	NM_145424	ENSMUSG00000074639	BC089597	CRAD-L	cDNA sequence BC089597	protein-coding	0.015000	0.512438	72(TTTTTTAGAGAG,+,0.00)
mm_119090.1	chr14	30891942	30892142	+	1	NA	NA	NA	5566	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.030000	0.587065	
mm_134150.1	chr16	10785091	10785291	-	1	NA	NA	NA	345	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.115000	0.776119	
mm_68639.1	chr7	118326818	118327018	-	1	NA	NA	NA	83011	NR_027879	67745	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0.015000	0.492537	
mm_96892.1	chr11	70437196	70437396	+	1	NA	NA	NA	-959	NR_106064	102465670		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.010000	0.477612	
mm_1203.1	chr1	62718933	62719133	+	1	NA	NA	NA	15716	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.030000	0.542289	
mm_5297.1	chr1	21291435	21291635	-	1	NA	NA	NA	6777	NR_002858	241041	Mm.290634	NR_002858	ENSMUSG00000025936	Gm4956	EG241041	predicted gene 4956	pseudo	0.005000	0.417910	72(TCTTTTAAATGG,+,0.00)
mm_18163.1	chr2	45099379	45099579	-	1	NA	NA	NA	10798	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.020000	0.378109	
mm_128958.1	chr15	74799730	74799930	-	1	NA	NA	NA	138	NM_029627	76486	Mm.273319	NM_029627	ENSMUSG00000044678	Ly6k	2410015A16Rik|3110035B01Rik|mLy-6K	lymphocyte antigen 6 complex, locus K	protein-coding	0.070000	0.616915	
mm_394.1	chr1	34121169	34121369	+	1	NA	NA	NA	3910	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.035000	0.507463	
mm_80621.1	chr9	88553131	88553331	+	1	NA	NA	NA	5211	NM_001163061	71640	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik	zinc finger protein 949	protein-coding	0.045000	0.532338	
mm_1517.1	chr1	72711226	72711426	+	1	NA	NA	NA	66	NM_009084	19981	Mm.21529	NM_009084	ENSMUSG00000046330	Rpl37a	-	ribosomal protein L37a	protein-coding	0.100000	0.601990	
mm_112000.1	chr12	110814933	110815133	-	1	NA	NA	NA	25906	NM_011973	26448	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0.065000	0.517413	55(TCCTAGTAAAGG,-,0.00)
mm_147755.1	chr18	61211529	61211729	-	1	NA	NA	NA	-33	NM_007885	13521	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	0.105000	0.706468	
mm_3800.1	chr1	157525985	157526185	+	1	NA	NA	NA	-85	NM_001159986	89867	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	0.020000	0.542289	63(GTCTCTAAGAGG,-,0.00)
mm_57667.1	chr6	128487902	128488102	-	1	NA	NA	NA	38718	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.025000	0.512438	
mm_129558.1	chr15	79534105	79534305	-	1	NA	NA	NA	-1288	NM_152806	67040	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.000000	0.293532	
mm_156244.1	chrX	136270164	136270364	+	1	NA	NA	NA	11	NM_001110234	12070	Mm.90787	NM_009750	ENSMUSG00000046432	Bex3	AL033356|DXWsu67e|Gcap27|Nade|Ngfrap1	brain expressed X-linked 3	protein-coding	0.100000	0.731343	
mm_40622.1	chr5	64806263	64806463	+	1	NA	NA	NA	2840	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.020000	0.517413	
mm_71816.1	chr8	68884451	68884651	+	1	NA	NA	NA	3996	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.378109	
mm_147035.1	chr18	34751451	34751651	-	1	NA	NA	NA	-18	NM_009860	12532	Mm.286602	NM_009860	ENSMUSG00000044201	Cdc25c	Cdc25	cell division cycle 25C	protein-coding	0.035000	0.527363	
mm_167723.1	chr9	101074031	101074231	+	1	NA	NA	NA	-631	NM_001100451	77853	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	male-specific lethal 2 homolog (Drosophila)	protein-coding	0.135000	0.701493	
mm_170513.1	chr19	29159954	29160154	+	1	NA	NA	NA	24775	NR_029778	724062		NR_029778	ENSMUSG00000065556	Mir101b	Mirn101b|mir-101b	microRNA 101b	ncRNA	0.065000	0.512438	
mm_9754.1	chr1	180813466	180813666	-	1	NA	NA	NA	39	NM_008210	15078	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	H3.3A	H3 histone, family 3A	protein-coding	0.110000	0.686567	
mm_156109.1	chrX	114474293	114474493	+	1	NA	NA	NA	60	NM_001290477	237010	Mm.132583	NM_172781	ENSMUSG00000025597	Klhl4	B130014A11|C130018J01Rik	kelch-like 4	protein-coding	0.010000	0.432836	
mm_119585.1	chr14	50926625	50926825	+	1	NA	NA	NA	1776	NM_009687	11792	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	0.020000	0.492537	
mm_121673.1	chr14	12466992	12467192	-	1	NA	NA	NA	-121227	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	0.025000	0.522388	
mm_103062.1	chr11	69837407	69837607	-	1	NA	NA	NA	-1018	NM_026982	69186	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	0.090000	0.711443	
mm_82013.1	chr9	121719125	121719325	+	1	NA	NA	NA	44	NM_010918	18087	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0.155000	0.731343	
mm_100580.1	chr11	120784227	120784427	+	1	NA	NA	NA	55	NM_001177874	209318	Mm.30195	NM_145370	ENSMUSG00000025156	Gps1	Cops1|Csn1|R75577|Sgn1	G protein pathway suppressor 1	protein-coding	0.140000	0.751244	
mm_30630.1	chr4	8785570	8785770	+	1	NA	NA	NA	95264	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.030000	0.457711	
mm_131465.1	chr16	17035490	17035690	+	1	NA	NA	NA	-34549	NM_023249	106369	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee-like 1 (Drosophila)	protein-coding	0.010000	0.482587	
mm_95271.1	chr11	45703713	45703913	+	1	NA	NA	NA	-104270	NR_045876	100009664	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.020000	0.457711	-83(GTGCATTTAAGC,-,0.00)
mm_149856.1	chr19	25095303	25095503	+	1	NA	NA	NA	95874	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.010000	0.512438	
mm_124626.1	chr15	3303189	3303389	+	1	NA	NA	NA	237	NM_001166063	100039139	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	ENSMUSG00000071814	coiled-coil domain containing 152	protein-coding	0.030000	0.621891	
mm_28941.1	chr3	98882218	98882418	-	1	NA	NA	NA	10912	NM_019545	56185	Mm.281874	NM_019545	ENSMUSG00000027870	Hao2	AI325478|Hao-2|Hao3|Haox3	hydroxyacid oxidase 2	protein-coding	0.015000	0.452736	
mm_101201.1	chr11	19018723	19018923	-	1	NA	NA	NA	146	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.045000	0.487562	-56(CCTTTAAGACAA,+,0.00)
mm_98547.1	chr11	95010302	95010502	+	1	NA	NA	NA	523	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.080000	0.686567	
mm_150533.1	chr19	39291398	39291598	+	1	NA	NA	NA	4413	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.000000	0.308458	
mm_63665.1	chr7	129593501	129593701	+	1	NA	NA	NA	1738	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.005000	0.497512	-32(GCTTTAAGACCC,+,0.00)
mm_139913.1	chr17	70963563	70963763	+	1	NA	NA	NA	26853	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.010000	0.462687	
mm_168803.1	chr12	20417581	20417781	+	1	NA	NA	NA	398098	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.035000	0.437811	-18(GTCCTTAAAAGA,-,0.00),-17(TCCTTAAAAGAC,+,0.00)
mm_67175.1	chr7	73595073	73595273	-	1	NA	NA	NA	-36778	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.035000	0.542289	
mm_20535.1	chr2	131041330	131041530	-	1	NA	NA	NA	-1032	NR_105969	102465606		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	0.170000	0.796020	
mm_120985.1	chr14	78966766	78966966	+	1	NA	NA	NA	117688	NM_173758	219189	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	0.000000	0.412935	
mm_137690.1	chr17	28895650	28895850	+	1	NA	NA	NA	-9515	NR_045457	74179	Mm.248931	NR_045457	ENSMUSG00000085333	1700030A11Rik	-	RIKEN cDNA 1700030A11 gene	ncRNA	0.025000	0.547264	
mm_170536.1	chr19	38704187	38704387	-	1	NA	NA	NA	114950	NM_021315	57753	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	0.030000	0.537313	
mm_45548.1	chr5	73024557	73024757	-	1	NA	NA	NA	17753	NM_173403	231290	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	0.005000	0.363184	
mm_23884.1	chr3	83031028	83031228	+	1	NA	NA	NA	4975	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.035000	0.557214	-99(GTTTTAAGAGCC,+,0.00)
mm_114290.1	chr13	58807597	58807797	+	1	NA	NA	NA	0	NM_001025074	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.065000	0.587065	
mm_44635.1	chr5	27817727	27817927	-	1	NA	NA	NA	-24120	NM_008314	15563	Mm.4835	NM_008314	ENSMUSG00000039106	Htr5a	Htr5	5-hydroxytryptamine (serotonin) receptor 5A	protein-coding	0.015000	0.562189	
mm_21944.1	chr2	167060771	167060971	-	1	NA	NA	NA	-2063	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.000000	0.527363	
mm_89273.1	chr10	87860727	87860927	+	1	NA	NA	NA	-284	NM_001111274	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.025000	0.492537	
mm_59227.1	chr7	24638691	24638891	+	1	NA	NA	NA	2221	NM_133743	72434	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	0.015000	0.512438	
mm_139791.1	chr17	65886273	65886473	+	1	NA	NA	NA	-618	NM_009067	19765	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.015000	0.462687	
mm_153460.1	chr19	41232338	41232538	-	1	NA	NA	NA	-25664	NM_011904	24087	Mm.89983	NM_011904	ENSMUSG00000025013	Tll2	-	tolloid-like 2	protein-coding	0.010000	0.383085	-62(TTTTTTATAGCG,+,0.00)
mm_158456.1	chrX	140599030	140599230	-	1	NA	NA	NA	1392	NM_001077364	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.175000	0.800995	
mm_101310.1	chr11	22765493	22765693	-	1	NA	NA	NA	94142	NM_016888	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.015000	0.512438	
mm_40192.1	chr5	36695696	36695896	+	1	NA	NA	NA	225	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.145000	0.786070	
mm_157679.1	chrX	59567962	59568162	-	1	NA	NA	NA	17510	NM_001290414	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding	0.070000	0.656716	-47(GTTTATATAGAA,+,0.00)
mm_114763.1	chr13	87663377	87663577	+	1	NA	NA	NA	-1157995	NM_010103	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.015000	0.437811	
mm_139020.1	chr17	46110902	46111102	+	1	NA	NA	NA	-2	NM_026768	68565	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	0.080000	0.666667	
mm_55959.1	chr6	85451736	85451936	-	1	NA	NA	NA	134	NR_028081	73327	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	0.070000	0.577114	
mm_153891.1	chr19	46969448	46969648	-	1	NA	NA	NA	19	NM_001164365	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.025000	0.477612	16(GCTCTTTAAAGG,-,0.00),17(CTCTTTAAAGGA,+,0.00),17(CTCTTTAAAGGA,-,0.00),18(TCTTTAAAGGAC,+,0.00)
mm_31898.1	chr4	83434992	83435192	+	1	NA	NA	NA	17348	NM_029949	77634	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	0.000000	0.467662	
mm_97571.1	chr11	78939909	78940109	+	1	NA	NA	NA	14718	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.025000	0.562189	
mm_59810.1	chr7	29170145	29170345	+	1	NA	NA	NA	35	NM_182694	243897	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	0.040000	0.587065	-96(CATTATAAAGGG,-,0.00)
mm_55433.1	chr6	66875331	66875531	-	1	NA	NA	NA	-20966	NM_001177557	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.020000	0.442786	
mm_1753.1	chr1	75507335	75507535	+	1	NA	NA	NA	-174	NM_001329843	16322	Mm.1100	NM_010564	ENSMUSG00000032968	Inha	AW555078	inhibin alpha	protein-coding	0.020000	0.557214	
mm_123696.1	chr14	69707425	69707625	-	1	NA	NA	NA	-32	NM_001301652	71843	Mm.27738	NM_001146012	ENSMUSG00000034194	R3hcc1	1700020M16Rik|AA407796	R3H domain and coiled-coil containing 1	protein-coding	0.090000	0.621891	
mm_138626.1	chr17	35841610	35841810	+	1	NA	NA	NA	212	NM_001010833	240087	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	0.095000	0.606965	
mm_42098.1	chr5	110344623	110344823	+	1	NA	NA	NA	-7	NR_132326	381667	Mm.332572	NM_001033459	ENSMUSG00000072754	Lrcol1	Clpsl3|Gm1679	leucine rich colipase-like 1	protein-coding	0.020000	0.557214	
mm_130717.1	chr15	101052092	101052292	-	1	NA	NA	NA	2207	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.035000	0.497512	
mm_89299.1	chr10	87913620	87913820	+	1	NA	NA	NA	52609	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.035000	0.567164	
mm_129483.1	chr15	78770895	78771095	-	1	NA	NA	NA	2450	NM_008595	17305	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.010000	0.517413	
mm_17657.1	chr2	32065260	32065460	-	1	NA	NA	NA	14414	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	0.000000	0.527363	
mm_3514.1	chr1	150107313	150107513	+	1	NA	NA	NA	7382	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.000000	0.293532	
mm_120107.1	chr14	59201357	59201557	+	1	NA	NA	NA	229	NM_027764	71330	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	0.155000	0.761194	
mm_128487.1	chr15	50890144	50890344	-	1	NA	NA	NA	-203	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.160000	0.845771	
mm_168307.1	chr11	107491967	107492167	+	1	NA	NA	NA	12539	NM_025894	66997	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0.005000	0.457711	
mm_41016.1	chr5	81102868	81103068	+	1	NA	NA	NA	81375	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.005000	0.333333	
mm_1868.1	chr1	85598040	85598240	+	1	NA	NA	NA	670	NM_030194	109032	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|ENSMUSG00000075603|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.005000	0.373134	
mm_122852.1	chr14	54781816	54782016	-	1	NA	NA	NA	-30	NM_016972	50934	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	0.090000	0.651741	
mm_102255.1	chr11	55184956	55185156	-	1	NA	NA	NA	21	NM_153170	246049	Mm.291280	NM_153170	ENSMUSG00000020264	Slc36a2	A530067G19Rik|PAT2|Tramd1	solute carrier family 36 (proton/amino acid symporter), member 2	protein-coding	0.020000	0.567164	
mm_69071.1	chr7	126975308	126975508	-	1	NA	NA	NA	-506	NM_026638	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.020000	0.522388	
mm_166522.1	chr6	24597618	24597818	+	1	NA	NA	NA	-53	NM_053098	93677	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	0.035000	0.562189	18(CGCTCTTAAAAG,-,0.00),19(GCTCTTAAAAGG,-,0.00)
mm_67044.1	chr7	67265920	67266120	-	1	NA	NA	NA	43404	NM_001191051	75099	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.035000	0.542289	
mm_129903.1	chr15	83935978	83936178	-	1	NA	NA	NA	17	NM_001161628	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	0.020000	0.582090	
mm_8849.1	chr1	162707736	162707936	-	1	NA	NA	NA	32720	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.005000	0.437811	
mm_4189.1	chr1	171213888	171214088	+	1	NA	NA	NA	18	NM_001243063	12355	Mm.486506	NM_009803	ENSMUSG00000005677	Nr1i3	AA209988|AI551208|CAR|CAR-beta|Care2|ESTM32|MB67	nuclear receptor subfamily 1, group I, member 3	protein-coding	0.015000	0.587065	
mm_32010.1	chr4	94739352	94739552	+	1	NA	NA	NA	163	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	0.025000	0.507463	-58(CCTTTAAGATAC,+,0.00)
mm_52354.1	chr6	112459561	112459761	+	1	NA	NA	NA	156	NM_007617	12391	Mm.3924	NM_007617	ENSMUSG00000062694	Cav3	AI385751|Cav-3|M-cav	caveolin 3	protein-coding	0.035000	0.572139	-94(CCCCCTTTAAGG,-,0.00),-92(CCCTTTAAGGAG,+,0.00),-91(CCTTTAAGGAGC,+,0.00)
mm_114867.1	chr13	93841382	93841582	+	1	NA	NA	NA	50705	NR_049198	100885837		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	0.000000	0.497512	
mm_28979.1	chr3	101110322	101110522	-	1	NA	NA	NA	-256	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding	0.105000	0.721393	
mm_54551.1	chr6	37016629	37016829	-	1	NA	NA	NA	-205368	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.010000	0.487562	
mm_97559.1	chr11	78935254	78935454	+	1	NA	NA	NA	10063	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.005000	0.452736	
mm_9108.1	chr1	170110684	170110884	-	1	NA	NA	NA	-21840	NM_022563	18214	Mm.229249	NM_022563	ENSMUSG00000026674	Ddr2	AW495251|Ntrkr3|tyro10	discoidin domain receptor family, member 2	protein-coding	0.020000	0.517413	
mm_68980.1	chr7	126589202	126589402	-	1	NA	NA	NA	-3485	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.025000	0.601990	
mm_141773.1	chr17	34284378	34284578	-	1	NA	NA	NA	3293	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.010000	0.432836	
mm_147274.1	chr18	39137818	39138018	-	1	NA	NA	NA	144773	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.025000	0.532338	
mm_110043.1	chr12	17329268	17329468	-	1	NA	NA	NA	-4638	NM_001159632	68775	Mm.178798	NM_133699	ENSMUSG00000020566	Atp6v1c2	1110038G14Rik	ATPase, H+ transporting, lysosomal V1 subunit C2	protein-coding	0.005000	0.482587	
mm_152647.1	chr19	12540655	12540855	-	1	NA	NA	NA	-32755	NM_001346545	107373	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	0.005000	0.472637	
mm_84413.1	chr9	65562086	65562286	-	1	NA	NA	NA	17901	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.010000	0.631841	
mm_50960.1	chr6	58909077	58909277	+	1	NA	NA	NA	-2051	NM_021432	58243	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.010000	0.318408	
mm_32968.1	chr4	120032441	120032641	+	1	NA	NA	NA	-128665	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.070000	0.716418	
mm_147821.1	chr18	61911472	61911672	-	1	NA	NA	NA	252	NM_198649	319713	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	0.105000	0.751244	
mm_159033.1	chr1	176275165	176275365	-	1	NA	NA	NA	47	NM_176916	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	0.110000	0.746269	
mm_147760.1	chr18	61331409	61331609	-	1	NA	NA	NA	68922	NM_133249	170826	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0.005000	0.557214	
mm_20389.1	chr2	129019586	129019786	-	1	NA	NA	NA	-46261	NM_027192	69737	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	0.005000	0.492537	-88(GTTTTAAGAGCC,+,0.00)
mm_21564.1	chr2	164190483	164190683	-	1	NA	NA	NA	-25	NM_138684	192200	Mm.6433	NM_138684	ENSMUSG00000042845	Wfdc12	Swam2|WAP2	WAP four-disulfide core domain 12	protein-coding	0.020000	0.611940	
mm_16811.1	chr2	11211917	11212117	-	1	NA	NA	NA	39635	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.000000	0.462687	72(CTCCTTTTAAGC,-,0.00),74(CCTTTTAAGCAT,+,0.00)
mm_15517.1	chr2	158313176	158313376	+	1	NA	NA	NA	6783	NM_008489	16803	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	0.000000	0.368159	
mm_157273.1	chrX	20291652	20291852	-	1	NA	NA	NA	12	NM_177353	236727	Mm.132983	NM_177353	ENSMUSG00000037341	Slc9a7	A530087D17Rik|NHE7	solute carrier family 9 (sodium/hydrogen exchanger), member 7	protein-coding	0.135000	0.761194	
mm_35043.1	chr4	4138908	4139108	-	1	NA	NA	NA	-563	NM_001002927	18619	Mm.475097	NM_001002927	ENSMUSG00000045573	Penk	AI326464|ENK|PPA|Penk1	preproenkephalin	protein-coding	0.065000	0.631841	
mm_80445.1	chr9	77962204	77962404	+	1	NA	NA	NA	44939	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.005000	0.383085	
mm_142541.1	chr17	46555925	46556125	-	1	NA	NA	NA	137	NM_020493	20807	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0.135000	0.800995	
mm_36669.1	chr4	95487334	95487534	-	1	NA	NA	NA	-70073	NM_001113412	75578	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.020000	0.542289	
mm_5951.1	chr1	56969739	56969939	-	1	NA	NA	NA	1495	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.085000	0.636816	
mm_108787.1	chr12	90738655	90738855	+	1	NA	NA	NA	282	NM_010050	13371	Mm.21389	NM_010050	ENSMUSG00000007682	Dio2	5DII|AI324267|DIOII	deiodinase, iodothyronine, type II	protein-coding	0.010000	0.378109	-12(TCCTTTAAACGC,+,0.00)
mm_10381.1	chr2	12300926	12301126	+	1	NA	NA	NA	-220	NR_040353	338535	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.025000	0.532338	
mm_167334.1	chr8	71367337	71367537	-	1	NA	NA	NA	220	NM_025917	67023	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.095000	0.616915	
mm_123174.1	chr14	57525507	57525707	-	1	NA	NA	NA	778	NM_145837	239114	Mm.390726	NM_145837	ENSMUSG00000050222	Il17d	AI462269|IL-17D	interleukin 17D	protein-coding	0.110000	0.781095	
mm_157044.1	chrX	7977934	7978134	-	1	NA	NA	NA	-10124	NM_008089	14460	Mm.335973	NM_008089	ENSMUSG00000031162	Gata1	Gata-1|Gf-1|eryf1	GATA binding protein 1	protein-coding	0.020000	0.522388	
mm_115683.1	chr13	13525909	13526109	-	1	NA	NA	NA	-64400	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.015000	0.477612	47(CGCTTTAAAAAC,-,0.00),48(GCTTTAAAAACC,+,0.00)
mm_22034.1	chr2	168185999	168186199	-	1	NA	NA	NA	21013	NM_009628	11538	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0.005000	0.412935	
mm_61740.1	chr7	82175125	82175325	+	1	NA	NA	NA	-84683	NM_001277955	20408	Mm.736	NM_017400	ENSMUSG00000030638	Sh3gl3	EEN-B2|SH3P13|Sh3d2c|Sh3d2c2	SH3-domain GRB2-like 3	protein-coding	0.095000	0.686567	
mm_165260.1	chr2	73037972	73038172	-	1	NA	NA	NA	-57626	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.020000	0.522388	
mm_145015.1	chr18	38637085	38637285	+	1	NA	NA	NA	-35917	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.010000	0.532338	
mm_44597.1	chr5	25059522	25059722	-	1	NA	NA	NA	41020	NM_145401	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.020000	0.597015	
mm_70350.1	chr8	5080098	5080298	+	1	NA	NA	NA	25089	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.020000	0.532338	
mm_29450.1	chr3	113156652	113156852	-	1	NA	NA	NA	-25	NM_001190403	545562	Mm.462977	NM_001190403		Amy2b	Amy-X|Amy2-2|OTTMUSG00000022462|mAmy2-1	amylase 2b	protein-coding	0.005000	0.358209	-4(GGATATAAATGG,-,0.00)
mm_10624.1	chr2	19488464	19488664	+	1	NA	NA	NA	-41890	NR_131924	102637107	Mm.406835	NR_131924	ENSMUSG00000085388	Ptf1aos	Gm13336|OTTMUSG00000011493	pancreas specific transcription factor 1a, opposite strand	ncRNA	0.010000	0.487562	
mm_90387.1	chr10	127295346	127295546	+	1	NA	NA	NA	4653	NM_001290183	13198	Mm.110220	NM_007837	ENSMUSG00000025408	Ddit3	CHOP-10|CHOP10|chop|gadd153	DNA-damage inducible transcript 3	protein-coding	0.015000	0.567164	
mm_169204.1	chr13	66402022	66402222	+	1	NA	NA	NA	38996	NM_183119	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.000000	0.467662	
mm_106784.1	chr12	4769022	4769222	+	1	NA	NA	NA	145	NM_175431	207921	Mm.184898	NM_175431	ENSMUSG00000050545	Fam228b	A830093I24Rik	family with sequence similarity 228, member B	protein-coding	0.140000	0.726368	
mm_116037.1	chr13	26770039	26770239	-	1	NA	NA	NA	26	NM_008232	15192	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	hepatoma derived growth factor-like 1	protein-coding	0.055000	0.601990	
mm_40445.1	chr5	53591435	53591635	+	1	NA	NA	NA	1049	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.035000	0.522388	
mm_98597.1	chr11	95825042	95825242	+	1	NA	NA	NA	642	NM_153104	237928	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.035000	0.616915	
mm_22300.1	chr2	180334611	180334811	-	1	NA	NA	NA	-32	NM_008093	14464	Mm.388880	NM_008093	ENSMUSG00000015627	Gata5	-	GATA binding protein 5	protein-coding	0.085000	0.711443	
mm_144033.1	chr17	90088111	90088311	-	1	NA	NA	NA	157	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.015000	0.462687	
mm_10662.1	chr2	20737226	20737426	+	1	NA	NA	NA	217813	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.020000	0.452736	
mm_35450.1	chr4	40269714	40269914	-	1	NA	NA	NA	27	NM_134097	106021	Mm.251548	NM_134097	ENSMUSG00000036822	Topors	AW105885|LUN|TP53BPL|p53BP3/LUN	topoisomerase I binding, arginine/serine-rich	protein-coding	0.070000	0.631841	
mm_84003.1	chr9	57606100	57606300	-	1	NA	NA	NA	81	NM_146223	235415	Mm.35242	NM_146223	ENSMUSG00000039714	Cplx3	BC016632|CpxIII|ERGIC-53L|ERGL|Lamn1l|Lman1l	complexin 3	protein-coding	0.060000	0.621891	
mm_88584.1	chr10	79709989	79710189	+	1	NA	NA	NA	5731	NM_009768	12215	Mm.726	NM_009768	ENSMUSG00000023175	Bsg	AI115436|AI325119|CD147|EMMPRIN|HT-7	basigin	protein-coding	0.030000	0.611940	
mm_96930.1	chr11	70519059	70519259	+	1	NA	NA	NA	-50	NM_146020	216871	Mm.22551	NM_146020	ENSMUSG00000046811	Gltpd2	C730027E14Rik	glycolipid transfer protein domain containing 2	protein-coding	0.020000	0.547264	
mm_95628.1	chr11	53631740	53631940	+	1	NA	NA	NA	2862	NM_008355	16163	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	0.015000	0.592040	
mm_144311.1	chr18	12642503	12642703	+	1	NA	NA	NA	-930	NM_028341	72747	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.000000	0.467662	
mm_151805.1	chr19	5424941	5425141	-	1	NA	NA	NA	-62	NM_001291080	66556	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	0.100000	0.701493	
mm_138680.1	chr17	35916813	35917013	+	1	NA	NA	NA	-283	NM_001163818	52040	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	0.120000	0.646766	38(GGGTATAAAAGA,-,0.00)
mm_67157.1	chr7	73541329	73541529	-	1	NA	NA	NA	317	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.030000	0.373134	
mm_53858.1	chr6	149309363	149309563	+	1	NA	NA	NA	49	NM_001289662	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.090000	0.691542	
mm_3023.1	chr1	133610307	133610507	+	1	NA	NA	NA	-127	NM_009227	20643	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	0.075000	0.616915	
mm_20517.1	chr2	130667635	130667835	-	1	NA	NA	NA	-106	NM_025922	16434	Mm.21399	NM_025922	ENSMUSG00000074797	Itpa	2010016I08Rik|AU020102|Itp	inosine triphosphatase (nucleoside triphosphate pyrophosphatase)	protein-coding	0.085000	0.646766	
mm_45811.1	chr5	87671451	87671651	-	1	NA	NA	NA	5343	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.005000	0.333333	-21(TGGTTTTAAAGC,-,0.00)
mm_119826.1	chr14	54259134	54259334	+	1	NA	NA	NA	2	NM_134076	105501	Mm.28771	NM_134076	ENSMUSG00000040997	Abhd4	1110035H23Rik|AI429574|Abh4	abhydrolase domain containing 4	protein-coding	0.065000	0.626866	
mm_121174.1	chr14	103033744	103033944	+	1	NA	NA	NA	-41	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.015000	0.532338	
mm_95252.1	chr11	44621087	44621287	+	1	NA	NA	NA	3087	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.035000	0.592040	
mm_165267.1	chr2	74736316	74736516	+	1	NA	NA	NA	10346	NR_029566	387144		NR_029566	ENSMUSG00000065500	Mir10b	Mirn10b|mir-10b|mmu-mir-10b	microRNA 10b	ncRNA	0.080000	0.671642	
mm_139851.1	chr17	69421724	69421924	+	1	NA	NA	NA	5377	NR_026848	77533	Mm.266592	NR_026848		C030034I22Rik	-	RIKEN cDNA C030034I22 gene	ncRNA	0.005000	0.368159	60(CCTTTTATGATC,+,0.00)
mm_70117.1	chr7	142968115	142968315	-	1	NA	NA	NA	1049	NM_008554	17173	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	0.130000	0.666667	
mm_32954.1	chr4	119637613	119637813	+	1	NA	NA	NA	-19	NM_008190	14915	Mm.2614	NM_008190	ENSMUSG00000023247	Guca2a	Guca2	guanylate cyclase activator 2a (guanylin)	protein-coding	0.000000	0.547264	-32(CTCTTTAAAAGC,-,0.00),-31(TCTTTAAAAGCC,+,0.00)
mm_44999.1	chr5	38220289	38220489	-	1	NA	NA	NA	39	NM_029162	75079	Mm.258741	NM_029162	ENSMUSG00000029127	Zbtb49	4930518A03Rik|Zfp509|Znf509	zinc finger and BTB domain containing 49	protein-coding	0.120000	0.691542	
mm_102976.1	chr11	69672247	69672447	-	1	NA	NA	NA	76	NM_144958	13681	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0.080000	0.562189	-5(CGCTCTATAAGT,-,0.00)
mm_122873.1	chr14	54925702	54925902	-	1	NA	NA	NA	986	NM_010112	13644	Mm.236438	NM_010112	ENSMUSG00000022203	Efs	-	embryonal Fyn-associated substrate	protein-coding	0.040000	0.641791	
mm_85344.1	chr9	103208833	103209033	-	1	NA	NA	NA	-6868	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.015000	0.492537	
mm_1287.1	chr1	64150026	64150226	+	1	NA	NA	NA	-28737	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.010000	0.507463	
mm_147112.1	chr18	35721968	35722168	-	1	NA	NA	NA	-577	NM_001033141	68545	Mm.329362	NM_001033141	ENSMUSG00000073599	Ecscr	1110006O17Rik|ARIA	endothelial cell surface expressed chemotaxis and apoptosis regulator	protein-coding	0.020000	0.527363	
mm_70536.1	chr8	13037881	13038081	+	1	NA	NA	NA	673	NM_001242368	14058	Mm.262589	NM_007972	ENSMUSG00000031444	F10	Cf10|fX	coagulation factor X	protein-coding	0.030000	0.577114	
mm_142038.1	chr17	35263505	35263705	-	1	NA	NA	NA	482	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.085000	0.651741	
mm_6176.1	chr1	65100533	65100733	-	1	NA	NA	NA	2730	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.040000	0.562189	-73(GGCTTTATGAGA,-,0.00)
mm_19630.1	chr2	102813762	102813962	-	1	NA	NA	NA	87803	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.000000	0.427861	
mm_94851.1	chr11	23771523	23771723	+	1	NA	NA	NA	-653	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.055000	0.512438	
mm_110192.1	chr12	27340179	27340379	-	1	NA	NA	NA	2439	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.005000	0.268657	
mm_163767.1	chr13	120017878	120018078	+	1	NA	NA	NA	34226	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.000000	0.432836	
mm_85973.1	chr9	112160362	112160562	-	1	NA	NA	NA	25487	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.000000	0.388060	
mm_103368.1	chr11	75178711	75178911	-	1	NA	NA	NA	-3	NM_027136	246257	Mm.41496	NM_027136	ENSMUSG00000038268	Ovca2	9030414M07Rik	candidate tumor suppressor in ovarian cancer 2	protein-coding	0.090000	0.671642	
mm_107464.1	chr12	37241802	37242002	+	1	NA	NA	NA	263	NM_178767	319660	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	0.005000	0.492537	
mm_162741.1	chr10	56388977	56389177	+	1	NA	NA	NA	11777	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.005000	0.393035	
mm_12771.1	chr2	79325489	79325689	+	1	NA	NA	NA	70163	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.010000	0.407960	
mm_35347.1	chr4	32250590	32250790	-	1	NA	NA	NA	-166745	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.025000	0.537313	
mm_1223.1	chr1	62738335	62738535	+	1	NA	NA	NA	35118	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.030000	0.537313	
mm_148544.1	chr19	4711165	4711365	+	1	NA	NA	NA	42	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	0.020000	0.497512	
mm_166434.1	chr5	137187854	137188054	-	1	NA	NA	NA	-71747	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.050000	0.512438	
mm_152425.1	chr19	10676334	10676534	-	1	NA	NA	NA	1637	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.015000	0.537313	
mm_144848.1	chr18	36610330	36610530	+	1	NA	NA	NA	49827	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.010000	0.462687	
mm_49843.1	chr6	38354566	38354766	+	1	NA	NA	NA	-63	NM_028421	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.060000	0.597015	
mm_3453.1	chr1	150103150	150103350	+	1	NA	NA	NA	3219	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.000000	0.303483	
mm_23761.1	chr3	73066213	73066413	+	1	NA	NA	NA	-38	NR_040557	626082	Mm.428099	NR_040557	ENSMUSG00000103428	Gm20754	-	predicted gene, 20754	ncRNA	0.040000	0.532338	
mm_92319.1	chr10	75559990	75560190	-	1	NA	NA	NA	240	NM_198860	192734	Mm.259320	NM_198860	ENSMUSG00000046807	Lrrc75b	AI646023|Fam211b	leucine rich repeat containing 75B	protein-coding	0.170000	0.805970	
mm_87338.1	chr10	43478738	43478938	+	1	NA	NA	NA	-302	NM_199028	331623	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.130000	0.731343	
mm_144164.1	chr18	6101543	6101743	+	1	NA	NA	NA	34455	NM_029277	75415	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0.000000	0.308458	
mm_51379.1	chr6	73248564	73248764	+	1	NA	NA	NA	159	NM_019879	56451	Mm.29845	NM_019879	ENSMUSG00000052738	Suclg1	1500000I01Rik|Sucla1	succinate-CoA ligase, GDP-forming, alpha subunit	protein-coding	0.075000	0.626866	
mm_29102.1	chr3	104818083	104818283	-	1	NA	NA	NA	122	NM_008619	17454	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0.070000	0.636816	
mm_54839.1	chr6	42586295	42586495	-	1	NA	NA	NA	10977	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.398010	
mm_102403.1	chr11	59139164	59139364	-	1	NA	NA	NA	-2889	NM_199152	380698	Mm.339542	NM_199152	ENSMUSG00000061462	Obscn	BC046431|Gm878|OTTMUSG00000005786|UNC89	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein-coding	0.035000	0.661692	
mm_105527.1	chr11	106300711	106300911	-	1	NA	NA	NA	1085	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.030000	0.587065	
mm_150341.1	chr19	34583431	34583631	+	1	NA	NA	NA	2	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.000000	0.507463	-33(CCTTATATAATC,+,0.00)
mm_116466.1	chr13	43480930	43481130	-	1	NA	NA	NA	-57	NM_019930	56705	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.170000	0.805970	
mm_35962.1	chr4	53142663	53142863	-	1	NA	NA	NA	17132	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.010000	0.378109	
mm_105660.1	chr11	107337785	107337985	-	1	NA	NA	NA	132835	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.020000	0.497512	54(CCTTAAAGACCG,+,0.00)
mm_86549.1	chr10	10234871	10235071	+	1	NA	NA	NA	237343	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.050000	0.497512	
mm_125057.1	chr15	25910377	25910577	+	1	NA	NA	NA	-23075	NM_001277318	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.015000	0.487562	
mm_7289.1	chr1	97769792	97769992	-	1	NA	NA	NA	200	NM_173760	227399	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	0.095000	0.671642	
mm_63599.1	chr7	128144571	128144771	+	1	NA	NA	NA	15103	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.020000	0.601990	
mm_103389.1	chr11	75416244	75416444	-	1	NA	NA	NA	6279	NM_011340	20317	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.055000	0.626866	
mm_46358.1	chr5	103211019	103211219	-	1	NA	NA	NA	215	NM_001081567	26414	Mm.39253	NM_009158	ENSMUSG00000046709	Mapk10	C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding	0.015000	0.393035	
mm_139348.1	chr17	50508154	50508354	+	1	NA	NA	NA	-1293	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.015000	0.557214	
mm_37415.1	chr4	122861359	122861559	-	1	NA	NA	NA	24598	NM_007598	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.000000	0.472637	
mm_62305.1	chr7	100178592	100178792	+	1	NA	NA	NA	9	NM_001190871	57442	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	0.045000	0.601990	
mm_59869.1	chr7	30231793	30231993	+	1	NA	NA	NA	136	NM_025548	66411	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	0.070000	0.601990	
mm_169425.1	chr14	53369888	53370088	+	1	NA	NA	NA	-874293	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.010000	0.467662	
mm_110464.1	chr12	51800671	51800871	-	1	NA	NA	NA	28765	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.000000	0.338308	
mm_170909.1	chr2	32628146	32628346	+	1	NA	NA	NA	-144	NM_001198792	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.005000	0.527363	
mm_76907.1	chr8	105846661	105846861	-	1	NA	NA	NA	5247	NM_177150	320394	Mm.334775	NM_177150	ENSMUSG00000036672	Cenpt	G630055P03Rik	centromere protein T	protein-coding	0.025000	0.592040	
mm_58272.1	chr6	145433950	145434150	-	1	NA	NA	NA	875	NM_028742	74071	Mm.441497	NM_028742	ENSMUSG00000054966	Lmntd1	4933403M22Rik|AI482300|Ifltd1|Lmna-rs1|Lmna1|OTTMUSG00000022798	lamin tail domain containing 1	protein-coding	0.040000	0.517413	
mm_62906.1	chr7	117380905	117381105	+	1	NA	NA	NA	26	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.130000	0.771144	
mm_118823.1	chr14	25576045	25576245	+	1	NA	NA	NA	-10659	NR_033492	77592	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0.015000	0.552239	
mm_94711.1	chr11	20531980	20532180	+	1	NA	NA	NA	-11173	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.030000	0.487562	
mm_107999.1	chr12	73352360	73352560	+	1	NA	NA	NA	57103	NR_046013	380765	Mm.490476	NR_046013		D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0.020000	0.477612	
mm_82263.1	chr9	6266476	6266676	-	1	NA	NA	NA	-29	NM_027942	71829	Mm.141452	NM_027942	ENSMUSG00000047619	Ddi1	1700011N24Rik	DNA-damage inducible 1	protein-coding	0.005000	0.472637	
mm_82672.1	chr9	22131513	22131713	-	1	NA	NA	NA	252	NM_001102404	11433	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.045000	0.601990	
mm_93451.1	chr10	110000839	110001039	-	1	NA	NA	NA	-720	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.005000	0.373134	
mm_82913.1	chr9	35005697	35005897	-	1	NA	NA	NA	-110931	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.000000	0.522388	53(CCCTCTTAAAAC,-,0.00)
mm_110005.1	chr12	15865631	15865831	-	1	NA	NA	NA	-48946	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.010000	0.422886	
mm_17600.1	chr2	30828088	30828288	-	1	NA	NA	NA	112	NM_133346	72323	Mm.27656	NM_133346	ENSMUSG00000039483	Asb6	2510004M11Rik|AA409356	ankyrin repeat and SOCS box-containing 6	protein-coding	0.085000	0.661692	
mm_131057.1	chr16	4265602	4265802	+	1	NA	NA	NA	36473	NR_003628	436332	Mm.478141	NM_001013830	ENSMUSG00000089645	Gm5766	EG436332	ribosomal protein L7a pseudogene	pseudo	0.010000	0.452736	
mm_172209.1	chr6	59129397	59129597	-	1	NA	NA	NA	-79373	NM_001081145	68140	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.025000	0.562189	
mm_61424.1	chr7	73618820	73619020	+	1	NA	NA	NA	-60525	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.050000	0.582090	
mm_59830.1	chr7	29298189	29298389	+	1	NA	NA	NA	-5716	NM_013874	29861	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.020000	0.432836	
mm_84181.1	chr9	60062930	60063130	-	1	NA	NA	NA	78190	NM_172444	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.010000	0.338308	
mm_2928.1	chr1	132265891	132266091	+	1	NA	NA	NA	-32635	NM_144810	213417	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0.045000	0.482587	-32(TTCTATAAAAAC,-,0.00)
mm_155631.1	chrX	84772627	84772827	+	1	NA	NA	NA	-275568	NM_001314038	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.015000	0.432836	-50(GACTATTAAAGC,-,0.00),59(GCATTTTAAAGC,-,0.00)
mm_123535.1	chr14	66805202	66805402	-	1	NA	NA	NA	63298	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.015000	0.567164	41(TTTTTTAAAGAG,+,0.00)
mm_47375.1	chr5	122988407	122988607	-	1	NA	NA	NA	592	NM_001003953	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.060000	0.661692	
mm_156159.1	chrX	129981897	129982097	+	1	NA	NA	NA	232255	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.005000	0.353234	-78(ACTTTTAAACAC,+,0.00),81(CCCTATATAGCT,+,0.00)
mm_156157.1	chrX	129962839	129963039	+	1	NA	NA	NA	213197	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.005000	0.323383	
mm_163330.1	chr12	8500100	8500300	+	1	NA	NA	NA	-215	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.115000	0.691542	
mm_47880.1	chr5	134703064	134703264	-	1	NA	NA	NA	-14574	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.005000	0.542289	
mm_70315.1	chr8	4243277	4243477	+	1	NA	NA	NA	3272	NM_001291778	26400	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	0.030000	0.636816	
mm_147141.1	chr18	36454429	36454629	-	1	NA	NA	NA	-34	NM_026027	67199	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0.045000	0.532338	
mm_1291.1	chr1	64301745	64301945	+	1	NA	NA	NA	-180456	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.005000	0.447761	-92(CTCTTTTAAAGG,-,0.00),-91(TCTTTTAAAGGG,+,0.00)
mm_118936.1	chr14	27210243	27210443	+	1	NA	NA	NA	-27667	NM_027871	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.030000	0.517413	
mm_98202.1	chr11	87795988	87796188	+	1	NA	NA	NA	2304	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.030000	0.587065	
mm_101355.1	chr11	23739870	23740070	-	1	NA	NA	NA	31000	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.010000	0.467662	
mm_13265.1	chr2	98666667	98666867	+	1	NA	NA	NA	1199110	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.035000	0.338308	
mm_141477.1	chr17	31144158	31144358	-	1	NA	NA	NA	24	NM_009363	21785	Mm.1825	NM_009363	ENSMUSG00000024028	Tff2	SP|mSP	trefoil factor 2 (spasmolytic protein 1)	protein-coding	0.020000	0.552239	
mm_126470.1	chr15	81301697	81301897	+	1	NA	NA	NA	-49935	NR_077230	78102	Mm.296832	NR_077229		8430426J06Rik	-	RIKEN cDNA 8430426J06 gene	ncRNA	0.020000	0.467662	80(AGCCATAAAGGC,-,0.00)
mm_81578.1	chr9	110422332	110422532	+	1	NA	NA	NA	2624	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.005000	0.522388	
mm_71383.1	chr8	45992553	45992753	+	1	NA	NA	NA	7197	NM_001039562	654824	Mm.334517	NM_001039562	ENSMUSG00000050914	Ankrd37	-	ankyrin repeat domain 37	protein-coding	0.000000	0.228856	
mm_98438.1	chr11	94938476	94938676	+	1	NA	NA	NA	2352	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.025000	0.611940	
mm_15442.1	chr2	157367022	157367222	+	1	NA	NA	NA	-472	NM_026968	69161	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	0.015000	0.427861	
mm_40179.1	chr5	36048558	36048758	+	1	NA	NA	NA	155339	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	0.010000	0.492537	
mm_144809.1	chr18	36286291	36286491	+	1	NA	NA	NA	5229	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.070000	0.696517	
mm_29814.1	chr3	127896127	127896327	-	1	NA	NA	NA	96	NM_027482	70617	Mm.317049	NM_027482	ENSMUSG00000050549	5730508B09Rik	2700063A17Rik|C80506	RIKEN cDNA 5730508B09 gene	protein-coding	0.135000	0.776119	
mm_86189.1	chr9	119403381	119403581	-	1	NA	NA	NA	1303	NM_007397	11481	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	0.070000	0.631841	
mm_43549.1	chr5	137569768	137569968	+	1	NA	NA	NA	28	NM_015799	50765	Mm.21757	NM_015799	ENSMUSG00000029716	Tfr2	Trfr2	transferrin receptor 2	protein-coding	0.035000	0.636816	
mm_131293.1	chr16	11397105	11397305	+	1	NA	NA	NA	-8443	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.000000	0.487562	6(GCCTCTATATGC,-,0.00)
mm_76530.1	chr8	87804296	87804496	-	1	NA	NA	NA	43	NM_001310520	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	0.025000	0.636816	
mm_59212.1	chr7	24547106	24547306	+	1	NA	NA	NA	56	NM_009532	22594	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	0.140000	0.716418	
mm_92008.1	chr10	62340016	62340216	-	1	NA	NA	NA	305	NM_001146100	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.055000	0.631841	
mm_148313.1	chr18	83767976	83768176	-	1	NA	NA	NA	318486	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.020000	0.507463	
mm_98928.1	chr11	98355215	98355415	+	1	NA	NA	NA	2968	NR_045477	69338	Mm.398308	NR_045477	ENSMUSG00000085944	1700003D09Rik	-	RIKEN cDNA 1700003D09 gene	ncRNA	0.020000	0.616915	
mm_55001.1	chr6	48835484	48835684	-	1	NA	NA	NA	5404	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.020000	0.527363	
mm_90286.1	chr10	123264942	123265142	+	1	NA	NA	NA	966	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	0.140000	0.691542	
mm_90456.1	chr10	127725300	127725500	+	1	NA	NA	NA	8	NM_009312	21334	Mm.2374	NM_009312	ENSMUSG00000025400	Tac2	PPT-B|Tac3	tachykinin 2	protein-coding	0.005000	0.582090	
mm_7094.1	chr1	88700447	88700647	-	1	NA	NA	NA	1644	NM_177305	320982	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.030000	0.542289	
mm_105952.1	chr11	115297451	115297651	-	1	NA	NA	NA	-5	NM_178035	328035	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804|OTTMUSG00000021749	fatty acid desaturase domain family, member 6	protein-coding	0.090000	0.681592	
mm_54748.1	chr6	41032935	41033135	-	1	NA	NA	NA	2474	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.487562	
mm_139806.1	chr17	66233459	66233659	+	1	NA	NA	NA	110039	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.020000	0.567164	
mm_110842.1	chr12	72945355	72945555	-	1	NA	NA	NA	5573	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	0.115000	0.711443	
mm_14332.1	chr2	129588174	129588374	+	1	NA	NA	NA	-4565	NM_001291020	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.015000	0.542289	
mm_127379.1	chr15	100870586	100870786	+	1	NA	NA	NA	41	NM_001077499	20273	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	0.190000	0.860697	
mm_141134.1	chr17	26206362	26206562	-	1	NA	NA	NA	3500	NM_001081069	50782	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	0.005000	0.512438	
mm_85952.1	chr9	112120081	112120281	-	1	NA	NA	NA	-1470	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.005000	0.447761	
mm_143359.1	chr17	67308182	67308382	-	1	NA	NA	NA	46177	NM_008984	19274	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.000000	0.383085	
mm_77671.1	chr8	124874584	124874784	-	1	NA	NA	NA	11651	NM_010322	14712	Mm.29114	NM_010322	ENSMUSG00000031985	Gnpat	AU019525|D1Ertd819e|DHAPAT	glyceronephosphate O-acyltransferase	protein-coding	0.015000	0.527363	
mm_5900.1	chr1	54732617	54732817	-	1	NA	NA	NA	-175033	NM_001163314	241062	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.000000	0.417910	
mm_168680.1	chr11	95310135	95310335	-	1	NA	NA	NA	11	NM_001195004	217127	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	0.060000	0.572139	
mm_16783.1	chr2	9889491	9889691	-	1	NA	NA	NA	-51	NR_040511	77682	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA	0.045000	0.577114	
mm_91630.1	chr10	42068512	42068712	-	1	NA	NA	NA	-50230	NM_001034858	213402	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.005000	0.537313	
mm_37872.1	chr4	132353532	132353732	-	1	NA	NA	NA	54	NR_003270	399101	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0.105000	0.616915	
mm_126542.1	chr15	82027936	82028136	+	1	NA	NA	NA	11667	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.015000	0.442786	
mm_155426.1	chrX	73492632	73492832	+	1	NA	NA	NA	9131	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.010000	0.542289	
mm_159963.1	chr6	90178579	90178779	+	1	NA	NA	NA	-37	NM_053222	113849	Mm.435482	NM_053222	ENSMUSG00000060816	Vmn1r52	V1ra7|VN3	vomeronasal 1 receptor 52	protein-coding	0.005000	0.373134	
mm_33677.1	chr4	133240703	133240903	+	1	NA	NA	NA	-15	NM_016693	53608	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	0.030000	0.621891	
mm_130688.1	chr15	100681855	100682055	-	1	NA	NA	NA	5965	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.020000	0.502488	
mm_43097.1	chr5	124460662	124460862	+	1	NA	NA	NA	14058	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.015000	0.472637	86(GTTTTTAAAAAG,-,0.00)
mm_94668.1	chr11	17221266	17221466	+	1	NA	NA	NA	9473	NM_178909	103784	Mm.298132	NM_178909	ENSMUSG00000078970	Wdr92	AI553587|HZGJ	WD repeat domain 92	protein-coding	0.030000	0.477612	
mm_45874.1	chr5	88327910	88328110	-	1	NA	NA	NA	10698	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.015000	0.412935	
mm_68099.1	chr7	102015591	102015791	-	1	NA	NA	NA	2464	NM_010531	16068	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.000000	0.492537	
mm_9690.1	chr1	178337009	178337209	-	1	NA	NA	NA	675	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.130000	0.726368	
mm_90194.1	chr10	120208706	120208906	+	1	NA	NA	NA	-20	NM_026617	68212	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	0.100000	0.661692	
mm_112673.1	chr13	16027487	16027687	+	1	NA	NA	NA	15736	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.452736	3(GAGTTTTAAAGG,-,0.00),5(GTTTTAAAGGGC,+,0.00)
mm_18631.1	chr2	69342464	69342664	-	1	NA	NA	NA	52	NM_021022	27413	Mm.439855	NM_021022	ENSMUSG00000027048	Abcb11	ABC16|Bsep|Lith1|PFIC2|PGY4|SPGP	ATP-binding cassette, sub-family B (MDR/TAP), member 11	protein-coding	0.020000	0.417910	
mm_66388.1	chr7	44105556	44105756	-	1	NA	NA	NA	3364	NM_010642	16616	Mm.443292	NM_010642	ENSMUSG00000066516	Klk1b21	Klk21|mGk-21	kallikrein 1-related peptidase b21	protein-coding	0.010000	0.562189	
mm_104696.1	chr11	97954864	97955064	-	1	NA	NA	NA	31482	NM_028199	72324	Mm.39617	NM_028199	ENSMUSG00000017417	Plxdc1	2410003I07Rik|AI848450|Tem7	plexin domain containing 1	protein-coding	0.025000	0.547264	
mm_60440.1	chr7	44476913	44477113	+	1	NA	NA	NA	6666	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.402985	
mm_150297.1	chr19	34550583	34550783	+	1	NA	NA	NA	-11	NM_008332	15958	Mm.2036	NM_008332	ENSMUSG00000045932	Ifit2	AV302338|Ifi54|P54	interferon-induced protein with tetratricopeptide repeats 2	protein-coding	0.030000	0.577114	
mm_137612.1	chr17	28262021	28262221	+	1	NA	NA	NA	-9587	NR_045427	69050	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0.015000	0.527363	
mm_79005.1	chr9	45426539	45426739	+	1	NA	NA	NA	-3654	NM_001081270	114873	Mm.325499	NM_001081270	ENSMUSG00000032087	Dscaml1	4921507G06Rik|4930435C18Rik|BB239540|mKIAA1132	Down syndrome cell adhesion molecule like 1	protein-coding	0.010000	0.497512	
mm_95411.1	chr11	50024885	50025085	+	1	NA	NA	NA	-346	NM_021540	59044	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.115000	0.726368	
mm_170900.1	chr2	30069249	30069449	+	1	NA	NA	NA	2875	NM_001204875	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.010000	0.412935	-85(ACATTTAAAAGG,-,0.00)
mm_120878.1	chr14	75284267	75284467	+	1	NA	NA	NA	-6	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0.085000	0.621891	3(GCTTTTAGATGC,+,0.00)
mm_135212.1	chr16	36626445	36626645	-	1	NA	NA	NA	39532	NM_019388	12524	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.015000	0.373134	
mm_104462.1	chr11	95076590	95076790	-	1	NA	NA	NA	24	NM_013565	16400	Mm.57035	NM_013565	ENSMUSG00000001507	Itga3	AA407068|CD49C|GAPB3	integrin alpha 3	protein-coding	0.075000	0.701493	
mm_31217.1	chr4	43983410	43983610	+	1	NA	NA	NA	6	NM_001002787	442829	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	0.030000	0.542289	
mm_169979.1	chr17	14989774	14989974	-	1	NA	NA	NA	11010	NM_001123370	100041574	Mm.393767	NM_001123370	ENSMUSG00000036552	9030025P20Rik	D17Zt9e	RIKEN cDNA 9030025P20 gene	protein-coding	0.000000	0.477612	
mm_10291.1	chr2	10371253	10371453	+	1	NA	NA	NA	902	NM_001198808	353282	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0.025000	0.412935	8(GGGTTGTAAAGG,-,0.00)
mm_553.1	chr1	38019171	38019371	+	1	NA	NA	NA	21261	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.040000	0.442786	-65(GTCCAGAAAAGG,-,0.00)
mm_142503.1	chr17	46032275	46032475	-	1	NA	NA	NA	2	NM_001287058	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.095000	0.696517	
mm_150042.1	chr19	29377998	29378198	+	1	NA	NA	NA	10660	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.010000	0.333333	
mm_34442.1	chr4	147940829	147941029	+	1	NA	NA	NA	34	NM_029841	77034	Mm.183076	NM_029841	ENSMUSG00000044496	2510039O18Rik	Kiaa2013	RIKEN cDNA 2510039O18 gene	protein-coding	0.125000	0.691542	
mm_6126.1	chr1	64527686	64527886	-	1	NA	NA	NA	-5018	NM_133828	12912	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.000000	0.417910	-33(GAGTATAAAAGG,-,0.00)
mm_164393.1	chr16	33746904	33747104	+	1	NA	NA	NA	-47033	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.000000	0.427861	
mm_140966.1	chr17	24658448	24658648	-	1	NA	NA	NA	-123	NM_001099664	381073	Mm.291772	NM_001099664	ENSMUSG00000071230	Npw	Gm935	neuropeptide W	protein-coding	0.055000	0.597015	
mm_75823.1	chr8	70487120	70487320	-	1	NA	NA	NA	138	NM_182991	67937	Mm.23002	NM_182991	ENSMUSG00000035964	Tmem59l	5330410G16Rik	transmembrane protein 59-like	protein-coding	0.060000	0.646766	
mm_86475.1	chr10	4611959	4612159	+	1	NA	NA	NA	70	NM_007956	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.020000	0.512438	
mm_88921.1	chr10	81192402	81192602	+	1	NA	NA	NA	-2189	NR_015477	69678	Mm.81562	NR_015477		Atcayos	2310050B05Rik	ataxia, cerebellar, Cayman type, opposite strand	ncRNA	0.150000	0.721393	
mm_137279.1	chr17	24727729	24727929	+	1	NA	NA	NA	0	NM_001163945	66211	Mm.46198	NM_025425	ENSMUSG00000002500	Rpl3l	1110057H16Rik	ribosomal protein L3-like	protein-coding	0.010000	0.572139	
mm_31067.1	chr4	41348903	41349103	+	1	NA	NA	NA	7	NM_023305	67123	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.070000	0.626866	
mm_123718.1	chr14	70151219	70151419	-	1	NA	NA	NA	2472	NM_146055	219158	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	0.020000	0.582090	
mm_55866.1	chr6	83457099	83457299	-	1	NA	NA	NA	-807	NM_001347313	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.065000	0.651741	
mm_141728.1	chr17	34116200	34116400	-	1	NA	NA	NA	3600	NR_037970	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.000000	0.303483	
mm_145160.1	chr18	46598531	46598731	+	1	NA	NA	NA	927	NM_010120	13664	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.025000	0.502488	
mm_45645.1	chr5	76951475	76951675	-	1	NA	NA	NA	3	NM_172146	231327	Mm.202337	NM_172146	ENSMUSG00000029246	Ppat	5730454C12Rik|AA408689|AA675351|AI507113|C79945	phosphoribosyl pyrophosphate amidotransferase	protein-coding	0.110000	0.726368	
mm_163695.1	chr13	100448629	100448829	-	1	NA	NA	NA	4135	NM_008670	17940	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.000000	0.422886	
mm_91243.1	chr10	22306471	22306671	-	1	NA	NA	NA	-149	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.010000	0.527363	
mm_150723.1	chr19	43612304	43612504	+	1	NA	NA	NA	79	NM_008699	18089	Mm.56994	NM_008699	ENSMUSG00000044220	Nkx2-3	Nkx-2.3|Nkx2.3|tinman	NK2 homeobox 3	protein-coding	0.055000	0.587065	
mm_118312.1	chr13	113101867	113102067	-	1	NA	NA	NA	-986	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.030000	0.522388	
mm_52798.1	chr6	121318147	121318347	+	1	NA	NA	NA	17951	NM_144512	14412	Mm.258596	NM_144512	ENSMUSG00000030108	Slc6a13	GAT3|Gabt3|Gat2	solute carrier family 6 (neurotransmitter transporter, GABA), member 13	protein-coding	0.015000	0.522388	
mm_146012.1	chr18	69346963	69347163	+	1	NA	NA	NA	1342	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.015000	0.323383	
mm_49880.1	chr6	38608873	38609073	+	1	NA	NA	NA	28266	NM_001033171	74253	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0.000000	0.363184	-58(GCTTTTATATTG,+,0.00)
mm_92754.1	chr10	81025713	81025913	-	1	NA	NA	NA	-436	NM_145217	208666	Mm.44995	NM_145217	ENSMUSG00000043670	Diras1	Di-Ras1|Gbts1|RIG	DIRAS family, GTP-binding RAS-like 1	protein-coding	0.020000	0.487562	53(GTTTATATACTC,+,0.00)
mm_138979.1	chr17	45456834	45457034	+	1	NA	NA	NA	18004	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.015000	0.507463	
mm_28850.1	chr3	96830873	96831073	-	1	NA	NA	NA	908	NM_021517	59020	Mm.489677	NM_021517	ENSMUSG00000038298	Pdzk1	1700023D20Rik|2610507N21Rik|4921513F16Rik|AI267131|AI314638|AL022680|D3Ertd537e|Pdzd1|mPDZK1	PDZ domain containing 1	protein-coding	0.005000	0.472637	
mm_127936.1	chr15	10558539	10558739	-	1	NA	NA	NA	29	NM_029430	75777	Mm.48812	NM_029430	ENSMUSG00000022249	Ttc23l	4930401A09Rik	tetratricopeptide repeat domain 23-like	protein-coding	0.030000	0.597015	
mm_164174.1	chr15	76196139	76196339	+	1	NA	NA	NA	-529	NM_201394	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.000000	0.572139	
mm_36780.1	chr4	102989374	102989574	-	1	NA	NA	NA	281	NR_040444	100504717	Mm.394445	NR_040444	ENSMUSG00000085181	Gm12709	OTTMUSG00000008056	predicted gene 12709	ncRNA	0.015000	0.462687	
mm_66325.1	chr7	42505650	42505850	-	1	NA	NA	NA	3	NM_001309389	434178	Mm.333810	NM_001309388	ENSMUSG00000092416	Zfp141	-	zinc finger protein 141	protein-coding	0.065000	0.567164	
mm_158121.1	chrX	102252093	102252293	-	1	NA	NA	NA	-12	NM_001276466	12705	Mm.2390	NM_007709	ENSMUSG00000051159	Cited1	AI316840|AU019144|Msg1	Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1	protein-coding	0.090000	0.636816	-35(CGCCTTTAAAGG,-,0.00),-34(GCCTTTAAAGGG,+,0.00),-34(GCCTTTAAAGGG,-,0.00),-33(CCTTTAAAGGGC,+,0.00),-32(CTTTAAAGGGCC,+,0.00),-4(CGCTATAAAATG,-,0.00)
mm_44804.1	chr5	33218136	33218336	-	1	NA	NA	NA	2	NM_133903	100689	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	0.020000	0.601990	
mm_11053.1	chr2	27182121	27182321	+	1	NA	NA	NA	16714	NM_138942	13166	Mm.167781	NM_138942	ENSMUSG00000000889	Dbh	-	dopamine beta hydroxylase	protein-coding	0.015000	0.582090	
mm_20104.1	chr2	121085686	121085886	-	1	NA	NA	NA	-27	NM_028799	74176	Mm.20187	NM_028799	ENSMUSG00000053675	Tgm5	2310007C07Rik|TGMX|TGx	transglutaminase 5	protein-coding	0.010000	0.587065	
mm_27586.1	chr3	59122884	59123084	-	1	NA	NA	NA	7778	NM_001008497	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.010000	0.487562	
mm_32554.1	chr4	109415540	109415740	+	1	NA	NA	NA	-7	NM_001145948	230603	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.005000	0.502488	
mm_173119.1	chrX	161926249	161926449	-	1	NA	NA	NA	208796	NM_198409	24004	Mm.328503	NM_198409	ENSMUSG00000043518	Rai2	3f8	retinoic acid induced 2	protein-coding	0.005000	0.512438	
mm_152519.1	chr19	11302109	11302309	-	1	NA	NA	NA	-18396	NM_183190	269063	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	0.000000	0.472637	
mm_13825.1	chr2	119237633	119237833	+	1	NA	NA	NA	373	NM_016907	20732	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	0.095000	0.711443	
mm_86840.1	chr10	21396077	21396277	+	1	NA	NA	NA	18877	NM_178713	237320	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0.010000	0.492537	
mm_89516.1	chr10	94311861	94312061	+	1	NA	NA	NA	-13258	NR_033209	215472	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	0.085000	0.651741	
mm_68407.1	chr7	109616707	109616907	-	1	NA	NA	NA	-239	NR_037617	76954	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.000000	0.542289	-38(AGTTATAAAAGC,-,0.00)
mm_58151.1	chr6	142322933	142323133	-	1	NA	NA	NA	-52	NM_130861	108096	Mm.206599	NM_130861	ENSMUSG00000063975	Slco1a5	Oatp-3|Oatp3|Slc21a7	solute carrier organic anion transporter family, member 1a5	protein-coding	0.015000	0.437811	
mm_152659.1	chr19	12795442	12795642	-	1	NA	NA	NA	581	NR_024093	664779	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0.145000	0.796020	
mm_108928.1	chr12	101007566	101007766	+	1	NA	NA	NA	14102	NR_035421	100316805		NR_035421	ENSMUSG00000080575	Mir1190	Mirn1190|mmu-mir-1190	microRNA 1190	ncRNA	0.040000	0.512438	
mm_32621.1	chr4	114406625	114406825	+	1	NA	NA	NA	1	NM_001085549	666048	Mm.331779	NM_001085549	ENSMUSG00000070867	Trabd2b	Gm12824|Hkat|OTTMUSG00000008561	TraB domain containing 2B	protein-coding	0.080000	0.746269	
mm_63692.1	chr7	130601300	130601500	+	1	NA	NA	NA	23916	NM_206856	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.005000	0.557214	3(CCTTTTATGACT,+,0.00)
mm_9188.1	chr1	171129780	171129980	-	1	NA	NA	NA	8219	NM_001081275	75472	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.020000	0.502488	
mm_51792.1	chr6	88222187	88222387	+	1	NA	NA	NA	19	NM_019964	56691	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	0.030000	0.636816	
mm_172166.1	chr6	44793040	44793240	+	1	NA	NA	NA	-266921	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.075000	0.517413	46(AACTTTAAATGG,-,0.00)
mm_28395.1	chr3	90052346	90052546	-	1	NA	NA	NA	29	NM_001165983	74383	Mm.25610	NM_028475	ENSMUSG00000042520	Ubap2l	3110083O19Rik|4932431F02Rik|A430103N23Rik|C77168|Nice-4|mKIAA0144	ubiquitin-associated protein 2-like	protein-coding	0.110000	0.671642	71(CCCTTTAAATCC,+,0.00)
mm_13543.1	chr2	110731497	110731697	+	1	NA	NA	NA	10103	NM_172979	269328	Mm.32566	NM_172979	ENSMUSG00000050808	Muc15	4732460E09|D730046L02Rik|MUC-15	mucin 15	protein-coding	0.010000	0.447761	
mm_126132.1	chr15	78336336	78336536	+	1	NA	NA	NA	10446	NM_007780	12983	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.010000	0.542289	
mm_23276.1	chr3	51660301	51660501	+	1	NA	NA	NA	-778	NM_174995	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.020000	0.472637	
mm_96437.1	chr11	67305593	67305793	+	1	NA	NA	NA	-21410	NM_001081250	544791	Mm.461064	NM_001081250	ENSMUSG00000060180	Myh13	MyHC-eo	myosin, heavy polypeptide 13, skeletal muscle	protein-coding	0.015000	0.452736	
mm_141496.1	chr17	31557948	31558148	-	1	NA	NA	NA	-6725	NR_027493	18771	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.005000	0.527363	7(CTTTTAATATGC,+,0.00),86(TCTTTTAAACCT,+,0.00)
mm_70901.1	chr8	25602176	25602376	+	1	NA	NA	NA	-8	NM_001001735	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.150000	0.746269	
mm_66257.1	chr7	35647035	35647235	-	1	NA	NA	NA	347	NM_019746	56330	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0.105000	0.711443	
mm_127392.1	chr15	101115701	101115901	+	1	NA	NA	NA	46	NM_144790	208258	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	0.005000	0.577114	
mm_37251.1	chr4	118269634	118269834	-	1	NA	NA	NA	21663	NM_011213	19268	Mm.29855	NM_011213	ENSMUSG00000033295	Ptprf	AA591035|LAR|LARS|RPTP-LAR	protein tyrosine phosphatase, receptor type, F	protein-coding	0.015000	0.462687	-36(CACTATATAAAA,-,0.00)
mm_119831.1	chr14	54361221	54361421	+	1	NA	NA	NA	480	NM_026936	69089	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	0.090000	0.671642	
mm_79529.1	chr9	57708471	57708671	+	1	NA	NA	NA	2	NM_153799	353190	Mm.268104	NM_153799	ENSMUSG00000038957	Edc3	AA517853|Lsm16|Yjdc	enhancer of mRNA decapping 3	protein-coding	0.090000	0.651741	
mm_77250.1	chr8	115705602	115705802	-	1	NA	NA	NA	1192	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.060000	0.606965	
mm_114992.1	chr13	97559901	97560101	+	1	NA	NA	NA	1	NR_046157	328314	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.025000	0.482587	
mm_27988.1	chr3	82093363	82093563	-	1	NA	NA	NA	12846	NR_105977	102466991		NR_105977	ENSMUSG00000098712	Mir7010	Gm28029|mmu-mir-7010	microRNA 7010	ncRNA	0.000000	0.412935	
mm_158049.1	chrX	99467290	99467490	-	1	NA	NA	NA	3345	NM_001083110	18744	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger 1, E3 ubiquitin protein ligase	protein-coding	0.060000	0.562189	
mm_70398.1	chr8	11217858	11218058	+	1	NA	NA	NA	-94847	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.020000	0.572139	
mm_72205.1	chr8	72584001	72584201	+	1	NA	NA	NA	11998	NM_144534	74166	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	0.005000	0.512438	
mm_132917.1	chr16	49739125	49739325	+	1	NA	NA	NA	39931	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.000000	0.432836	
mm_69116.1	chr7	127025783	127025983	-	1	NA	NA	NA	596	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.115000	0.721393	
mm_32035.1	chr4	95681545	95681745	+	1	NA	NA	NA	102224	NM_029347	75578	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.010000	0.268657	
mm_105290.1	chr11	102469643	102469843	-	1	NA	NA	NA	140	NM_010575	16399	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0.015000	0.552239	
mm_159549.1	chr4	101717330	101717530	+	1	NA	NA	NA	23	NM_010704	16847	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.095000	0.666667	
mm_168914.1	chr12	55877800	55878000	-	1	NA	NA	NA	41534	NM_001037756	52592	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0.000000	0.432836	
mm_64098.1	chr7	141009490	141009690	+	1	NA	NA	NA	1154	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.015000	0.497512	
mm_24177.1	chr3	88577925	88578125	+	1	NA	NA	NA	-1646	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.015000	0.462687	
mm_119807.1	chr14	54222147	54222347	+	1	NA	NA	NA	31682	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.542289	
mm_116582.1	chr13	47106024	47106224	-	1	NA	NA	NA	97	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.150000	0.706468	
mm_109152.1	chr12	107996357	107996557	+	1	NA	NA	NA	6957	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.020000	0.462687	
mm_171972.1	chr5	88547417	88547617	+	1	NA	NA	NA	-6966	NM_023054	65961	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	0.025000	0.482587	
mm_48414.1	chr5	140264226	140264426	-	1	NA	NA	NA	57226	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.040000	0.582090	
mm_93564.1	chr10	116535727	116535927	-	1	NA	NA	NA	45684	NM_001037848	72068	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.025000	0.502488	-60(GACTATTAAGGC,-,0.00)
mm_131790.1	chr16	22898799	22898999	+	1	NA	NA	NA	-4513	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.055000	0.606965	
mm_73006.1	chr8	93810841	93811041	+	1	NA	NA	NA	103	NM_001113384	14681	Mm.251445	NM_010308	ENSMUSG00000031748	Gnao1	AW050213|Galphao|Gnao|alphaO	guanine nucleotide binding protein, alpha O	protein-coding	0.095000	0.706468	
mm_92990.1	chr10	86701886	86702086	-	1	NA	NA	NA	3458	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.015000	0.412935	
mm_4304.1	chr1	171840485	171840685	+	1	NA	NA	NA	888	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.010000	0.447761	
mm_12318.1	chr2	69380392	69380592	+	1	NA	NA	NA	30	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.025000	0.562189	
mm_42772.1	chr5	121288014	121288214	+	1	NA	NA	NA	67895	NM_181421	269700	Mm.184589	NM_181421	ENSMUSG00000042744	Gm15800	A130010L24|AU042671|BC019639|EG545802|OTTMUSG00000026283|mKIAA0614	predicted gene 15800	protein-coding	0.005000	0.348259	
mm_141186.1	chr17	26939284	26939484	-	1	NA	NA	NA	74	NR_104458	67675	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	0.110000	0.651741	
mm_49758.1	chr6	34768682	34768882	+	1	NA	NA	NA	-11650	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.025000	0.447761	
mm_104599.1	chr11	97142828	97143028	-	1	NA	NA	NA	3491	NR_106094	102466822		NR_106094	ENSMUSG00000099286	Mir7235	Gm27986|mmu-mir-7235	microRNA 7235	ncRNA	0.015000	0.437811	
mm_148972.1	chr19	7557359	7557559	+	1	NA	NA	NA	0	NM_139269	225845	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.040000	0.592040	
mm_170689.1	chr2	131127275	131127475	+	1	NA	NA	NA	-37	NM_028306	72630	Mm.277465	NM_028306	ENSMUSG00000074793	Hspa12b	2700081N06Rik	heat shock protein 12B	protein-coding	0.080000	0.721393	
mm_116264.1	chr13	34345557	34345757	-	1	NA	NA	NA	-475	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.025000	0.542289	-31(GACCATAAAAAG,-,0.00)
mm_87095.1	chr10	33083130	33083330	+	1	NA	NA	NA	-253	NM_029726	76757	Mm.338508	NM_029726	ENSMUSG00000019787	Trdn	2310045H21Rik|EG432451|TDN	triadin	protein-coding	0.005000	0.378109	
mm_79465.1	chr9	56424318	56424518	+	1	NA	NA	NA	5572	NM_025812	66867	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0.000000	0.378109	
mm_159607.1	chr4	130138442	130138642	-	1	NA	NA	NA	9	NM_001163027	230777	Mm.246595	NM_198959	ENSMUSG00000028778	Hcrtr1	Ox1r|ox-1-R|ox1-R	hypocretin (orexin) receptor 1	protein-coding	0.090000	0.651741	
mm_113805.1	chr13	46501943	46502143	+	1	NA	NA	NA	140	NM_026056	67252	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding	0.085000	0.706468	
mm_127377.1	chr15	100814215	100814415	+	1	NA	NA	NA	33061	NM_001347102	59033	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0.020000	0.626866	
mm_136405.1	chr16	93711169	93711369	-	1	NA	NA	NA	-638	NM_026700	70028	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0.020000	0.427861	
mm_51883.1	chr6	90601835	90602035	+	1	NA	NA	NA	-2945	NM_027868	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.015000	0.567164	
mm_93252.1	chr10	95501837	95502037	-	1	NA	NA	NA	-10	NM_026065	67270	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|MRP-L31|PTD007|Rpml31	mitochondrial ribosomal protein L42	protein-coding	0.090000	0.621891	
mm_17741.1	chr2	32712661	32712861	-	1	NA	NA	NA	23	NM_130860	107951	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0.145000	0.796020	
mm_124770.1	chr15	6799978	6800178	+	1	NA	NA	NA	74235	NM_011019	18414	Mm.10760	NM_011019	ENSMUSG00000022146	Osmr	OSMRB	oncostatin M receptor	protein-coding	0.005000	0.303483	
mm_146445.1	chr18	85071671	85071871	+	1	NA	NA	NA	-120247	NM_025969	67105	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	tranlocase of inner mitochondrial membrane 21	protein-coding	0.010000	0.407960	-68(CTTCCTAAAAGG,-,0.00)
mm_113704.1	chr13	43250835	43251035	+	1	NA	NA	NA	53237	NM_001033399	328232	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	0.015000	0.572139	
mm_92700.1	chr10	80701861	80702061	-	1	NA	NA	NA	-141	NM_172457	208228	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.115000	0.696517	31(TTCCCTTTAAGG,-,0.00),32(TCCCTTTAAGGG,-,0.00),33(CCCTTTAAGGGA,+,0.00),34(CCTTTAAGGGAA,+,0.00)
mm_104438.1	chr11	94973359	94973559	-	1	NA	NA	NA	2868	NM_009161	20391	Mm.18709	NM_009161	ENSMUSG00000001508	Sgca	50DAG|Asg	sarcoglycan, alpha (dystrophin-associated glycoprotein)	protein-coding	0.010000	0.626866	
mm_108045.1	chr12	73907895	73908095	+	1	NA	NA	NA	128	NM_001313919	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.125000	0.736318	
mm_165449.1	chr2	156475793	156475993	+	1	NA	NA	NA	359	NM_001006664	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.150000	0.810945	
mm_10456.1	chr2	14289055	14289255	+	1	NA	NA	NA	28152	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.010000	0.432836	
mm_170957.1	chr2	5379274	5379474	-	1	NA	NA	NA	-16	NR_030601	100124465		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.050000	0.502488	
mm_135387.1	chr16	44332547	44332747	-	1	NA	NA	NA	191	NM_198034	320007	Mm.242144	NM_198034	ENSMUSG00000022696	Sidt1	AW045928|B830021E24Rik	SID1 transmembrane family, member 1	protein-coding	0.075000	0.661692	
mm_39574.1	chr5	23433866	23434066	+	1	NA	NA	NA	387	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.070000	0.671642	
mm_152559.1	chr19	11491863	11492063	-	1	NA	NA	NA	-75	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.010000	0.407960	
mm_15020.1	chr2	152677483	152677683	+	1	NA	NA	NA	8122	NM_001159552	14950	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	0.025000	0.542289	
mm_10933.1	chr2	25467786	25467986	+	1	NA	NA	NA	1863	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.020000	0.567164	
mm_89649.1	chr10	97479350	97479550	+	1	NA	NA	NA	-50	NM_001190451	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.015000	0.432836	
mm_35316.1	chr4	25666316	25666516	-	1	NA	NA	NA	133587	NM_010243	14348	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.010000	0.383085	
mm_12847.1	chr2	83644411	83644611	+	1	NA	NA	NA	-67	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.160000	0.751244	
mm_104635.1	chr11	97523114	97523314	-	1	NA	NA	NA	-22874	NM_001289118	100141474	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.055000	0.656716	
mm_88682.1	chr10	80053912	80054112	+	1	NA	NA	NA	-7	NM_001037741	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.135000	0.741294	
mm_43690.1	chr5	139150043	139150243	+	1	NA	NA	NA	-80	NM_001081265	433956	Mm.5547	NM_001081265	ENSMUSG00000025857	Dnaaf5	BC053401|C76907|Heatr2	dynein, axonemal assembly factor 5	protein-coding	0.075000	0.661692	
mm_113431.1	chr13	34734777	34734977	+	1	NA	NA	NA	-4765	NM_138746	108161	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.010000	0.457711	80(CTCTTTAAACTC,+,0.00)
mm_39540.1	chr5	21475099	21475299	+	1	NA	NA	NA	50296	NM_177869	330050	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	0.010000	0.527363	
mm_82557.1	chr9	21028169	21028369	-	1	NA	NA	NA	-1104	NM_023892	78369	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.010000	0.457711	
mm_101973.1	chr11	50325484	50325684	-	1	NA	NA	NA	89	NM_001110499	12330	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	0.130000	0.736318	
mm_77422.1	chr8	121082968	121083168	-	1	NA	NA	NA	42	NR_045471	68790	Mm.246916	NR_045471	ENSMUSG00000097336	Fendrr	1110050K14Rik|LL66|linc-Foxf1a|lincFoxf1	Foxf1 adjacent non-coding developmental regulatory RNA	ncRNA	0.135000	0.731343	
mm_82862.1	chr9	31913226	31913426	-	1	NA	NA	NA	-41	NM_013800	12023	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.115000	0.706468	
mm_119478.1	chr14	47319417	47319617	+	1	NA	NA	NA	21203	NM_178684	218975	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	0.025000	0.407960	
mm_137646.1	chr17	28549377	28549577	+	1	NA	NA	NA	-10	NM_001034871	328788	Mm.99400	NM_001034871	ENSMUSG00000024224	Clpsl2	Gm749	colipase-like 2	protein-coding	0.035000	0.631841	
mm_33968.1	chr4	137594855	137595055	+	1	NA	NA	NA	766	NM_130879	170707	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	0.025000	0.447761	
mm_96541.1	chr11	68692012	68692212	+	1	NA	NA	NA	197	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.080000	0.666667	
mm_119942.1	chr14	54983462	54983662	+	1	NA	NA	NA	-7786	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.025000	0.557214	
mm_150040.1	chr19	29377821	29378021	+	1	NA	NA	NA	10483	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.000000	0.323383	
mm_170092.1	chr17	36121329	36121529	-	1	NA	NA	NA	6	NM_010395	15024	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	0.025000	0.522388	
mm_82182.1	chr9	123933825	123934025	+	1	NA	NA	NA	34767	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.020000	0.437811	
mm_59613.1	chr7	28142493	28142693	+	1	NA	NA	NA	13127	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.020000	0.447761	
mm_36493.1	chr4	83273672	83273872	-	1	NA	NA	NA	50417	NM_027238	69863	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.065000	0.616915	
mm_63626.1	chr7	128340330	128340530	+	1	NA	NA	NA	-42299	NM_145590	233913	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.030000	0.502488	
mm_5047.1	chr1	194626810	194627010	+	1	NA	NA	NA	7081	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	0.000000	0.378109	
mm_112384.1	chr12	119238033	119238233	-	1	NA	NA	NA	143	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.040000	0.542289	
mm_102267.1	chr11	55394481	55394681	-	1	NA	NA	NA	25499	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.015000	0.422886	
mm_37529.1	chr4	124850581	124850781	-	1	NA	NA	NA	49	NM_001142727	68920	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	0.150000	0.736318	-11(CCGCTTAAAGGG,-,0.00),-9(GCTTAAAGGGAC,+,0.00)
mm_130878.1	chr15	102246215	102246415	-	1	NA	NA	NA	185	NM_001042727	19411	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.060000	0.686567	
mm_25128.1	chr3	102144070	102144270	+	1	NA	NA	NA	57715	NM_009814	12373	Mm.15343	NM_009814	ENSMUSG00000027861	Casq2	AA033488|AW146219|Csq2|ESTM52|cCSQ	calsequestrin 2	protein-coding	0.010000	0.522388	
mm_54017.1	chr6	8509023	8509223	-	1	NA	NA	NA	38	NR_040452	320312	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.070000	0.597015	
mm_151784.1	chr19	5366505	5366705	-	1	NA	NA	NA	-208	NM_027236	69860	Mm.299167	NM_027236	ENSMUSG00000024841	Eif1ad	2010003J03Rik|AI131644	eukaryotic translation initiation factor 1A domain containing	protein-coding	0.125000	0.666667	
mm_141791.1	chr17	34342033	34342233	-	1	NA	NA	NA	2512	NM_010381	100504404	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	0.015000	0.432836	
mm_149195.1	chr19	9954749	9954949	+	1	NA	NA	NA	-25751	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.015000	0.477612	
mm_21874.1	chr2	166074353	166074553	-	1	NA	NA	NA	80832	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.010000	0.512438	
mm_102504.1	chr11	60723324	60723524	-	1	NA	NA	NA	3839	NM_022009	14248	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	0.010000	0.522388	
mm_31254.1	chr4	45012086	45012286	+	1	NA	NA	NA	226	NM_001163284	230119	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0.135000	0.756219	
mm_162691.1	chr10	19644892	19645092	+	1	NA	NA	NA	22964	NM_178258	237310	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	0.010000	0.512438	
mm_10222.1	chr2	5957367	5957567	+	1	NA	NA	NA	5998	NM_001081132	326622	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	0.005000	0.363184	
mm_88858.1	chr10	80930729	80930929	+	1	NA	NA	NA	738	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.030000	0.527363	55(TCTTATATACAC,+,0.00)
mm_162678.1	chr10	10203023	10203223	+	1	NA	NA	NA	269191	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.005000	0.363184	86(ATGTTTAAAAGC,-,0.00)
mm_150370.1	chr19	34746207	34746407	+	1	NA	NA	NA	804	NM_172838	240638	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0.015000	0.532338	
mm_66188.1	chr7	34196085	34196285	-	1	NA	NA	NA	462	NM_026549	68079	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.065000	0.666667	
mm_92592.1	chr10	80075332	80075532	-	1	NA	NA	NA	21413	NM_001037741	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.045000	0.601990	
mm_29630.1	chr3	121571510	121571710	-	1	NA	NA	NA	-39266	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.020000	0.492537	
mm_160655.1	chr9	117629814	117630014	-	1	NA	NA	NA	-1	NM_001172121	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.035000	0.552239	
mm_85357.1	chr9	103215145	103215345	-	1	NA	NA	NA	-13180	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.015000	0.507463	
mm_139837.1	chr17	69156757	69156957	+	1	NA	NA	NA	47	NM_013813	13823	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.125000	0.766169	
mm_154539.1	chrM	13967	14167	-	1	NA	NA	NA	NA	NA									0.015000	0.308458	70(CTATTTATGGAG,+,0.00)
mm_156667.1	chrX	159210248	159210448	+	1	NA	NA	NA	-45434	NM_148945	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	0.025000	0.472637	
mm_144920.1	chr18	37661674	37661874	+	1	NA	NA	NA	-171	NM_033584	93709	Mm.247203	NM_033584	ENSMUSG00000103144	Pcdhga1	-	protocadherin gamma subfamily A, 1	protein-coding	0.030000	0.472637	
mm_6693.1	chr1	80715607	80715807	-	1	NA	NA	NA	42846	NM_175291	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.000000	0.313433	
mm_54090.1	chr6	15846064	15846264	-	1	NA	NA	NA	125503	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.005000	0.407960	
mm_63768.1	chr7	131236778	131236978	+	1	NA	NA	NA	62476	NM_175166	71395	Mm.118845	NM_175166	ENSMUSG00000006204	5430419D17Rik	-	RIKEN cDNA 5430419D17 gene	protein-coding	0.005000	0.407960	
mm_170414.1	chr18	68692062	68692262	+	1	NA	NA	NA	-47238	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0.080000	0.527363	46(AACTTTAAATGG,-,0.00)
mm_41039.1	chr5	86086104	86086304	+	1	NA	NA	NA	14458	NM_001310639	56792	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.005000	0.417910	
mm_45360.1	chr5	65991140	65991340	-	1	NA	NA	NA	13045	NR_027961	231253	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.000000	0.437811	-49(CCATTTATAACC,+,0.00),-35(GCATTTATAAGA,-,0.00)
mm_157170.1	chrX	9469210	9469410	-	1	NA	NA	NA	14	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.412935	
mm_157350.1	chrX	36989566	36989766	-	1	NA	NA	NA	29	NM_001177324	56526	Mm.260036	NM_019942	ENSMUSG00000050379	Sept6	2810035H17Rik|C920001C06Rik|Sep6|mKIAA0128	septin 6	protein-coding	0.055000	0.686567	
mm_77142.1	chr8	111537285	111537485	-	1	NA	NA	NA	745	NM_001168621	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.115000	0.706468	
mm_17963.1	chr2	37430715	37430915	-	1	NA	NA	NA	104	NM_146253	241322	Mm.330182	NM_146253	ENSMUSG00000066798	Zbtb6	A830092L04Rik|ZID|Zfp482	zinc finger and BTB domain containing 6	protein-coding	0.055000	0.582090	
mm_45524.1	chr5	72636112	72636312	-	1	NA	NA	NA	6540	NM_007723	12788	Mm.436652	NM_007723	ENSMUSG00000067220	Cnga1	Cncg	cyclic nucleotide gated channel alpha 1	protein-coding	0.010000	0.507463	
mm_156615.1	chrX	153499275	153499475	+	1	NA	NA	NA	1143	NM_018798	54609	Mm.430772	NM_018798	ENSMUSG00000050148	Ubqln2	Chap1|Dsk2|HRIHFB2157|Plic-2|Plic2	ubiquilin 2	protein-coding	0.055000	0.601990	
mm_149787.1	chr19	23140862	23141062	+	1	NA	NA	NA	-264	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.125000	0.696517	31(CCTTTTAAATGT,+,0.00)
mm_45711.1	chr5	84067095	84067295	-	1	NA	NA	NA	350187	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.010000	0.427861	
mm_114430.1	chr13	65032956	65033156	+	1	NA	NA	NA	-2	NM_001083890	238683	Mm.295543	NM_001083890	ENSMUSG00000074849	Spata31d1c	4932441B19Rik|Fam75d1c	spermatogenesis associated 31 subfamily D, member 1C	protein-coding	0.000000	0.472637	
mm_20034.1	chr2	119760315	119760515	-	1	NA	NA	NA	16	NM_203345	17005	Mm.1740	NM_008523	ENSMUSG00000027297	Ltk	-	leukocyte tyrosine kinase	protein-coding	0.035000	0.547264	
mm_44270.1	chr5	5693967	5694167	-	1	NA	NA	NA	22	NM_001285471	74051	Mm.274956	NM_028734	ENSMUSG00000015653	Steap2	4921538B17Rik|AI930049|AW045895|IPCA-1|IPCA1|PCANAP1|STAMP1|STMP	six transmembrane epithelial antigen of prostate 2	protein-coding	0.150000	0.796020	
mm_63122.1	chr7	122969780	122969980	+	1	NA	NA	NA	579	NR_045614	73951	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.150000	0.751244	
mm_102762.1	chr11	67771025	67771225	-	1	NA	NA	NA	28	NM_175681	93896	Mm.118883	NM_175681	ENSMUSG00000049928	Glp2r	9530092J08Rik|GLP-2	glucagon-like peptide 2 receptor	protein-coding	0.035000	0.547264	
mm_42197.1	chr5	112288651	112288851	+	1	NA	NA	NA	12060	NM_009419	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.010000	0.592040	
mm_79692.1	chr9	60671863	60672063	+	1	NA	NA	NA	15571	NM_001311095	102747	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0.010000	0.422886	
mm_160293.1	chr7	129256913	129257113	+	1	NA	NA	NA	-81	NM_001080963	381925	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0.120000	0.796020	
mm_11097.1	chr2	28031964	28032164	+	1	NA	NA	NA	52814	NM_010190	14134	Mm.182935	NM_010190	ENSMUSG00000026835	Fcnb	Fcn2	ficolin B	protein-coding	0.035000	0.597015	
mm_58805.1	chr7	16309509	16309709	+	1	NA	NA	NA	26	NM_133234	170770	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.140000	0.781095	
mm_146746.1	chr18	16115276	16115476	-	1	NA	NA	NA	-397330	NM_199055	71367	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0.000000	0.402985	
mm_10134.1	chr2	4017663	4017863	+	1	NA	NA	NA	80	NM_001347086	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.015000	0.542289	
mm_76110.1	chr8	80700534	80700734	-	1	NA	NA	NA	38825	NM_053124	93762	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.000000	0.293532	
mm_90174.1	chr10	119672594	119672794	+	1	NA	NA	NA	89005	NR_045359	75321	Mm.402041	NR_045359	ENSMUSG00000084764	Grip1os2	4930564G21Rik	glutamate receptor interacting protein 1, opposite strand 2	ncRNA	0.010000	0.323383	
mm_137092.1	chr17	21535438	21535638	+	1	NA	NA	NA	-1	NM_144515	22710	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	0.020000	0.582090	
mm_11562.1	chr2	32845830	32846030	+	1	NA	NA	NA	1302	NM_009295	20910	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0.020000	0.457711	5(CACTCTAAAAAG,-,0.00)
mm_301.1	chr1	23761654	23761854	+	1	NA	NA	NA	-172	NM_172124	280645	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0.030000	0.626866	
mm_133458.1	chr16	89129103	89129303	+	1	NA	NA	NA	-65201	NM_001276278	68637	Mm.384089	NM_001276278	ENSMUSG00000068073	1110025L11Rik	-	RIKEN cDNA 1110025L11 gene	protein-coding	0.010000	0.452736	-33(GTGTATAAAAGG,-,0.00)
mm_18244.1	chr2	52188649	52188849	-	1	NA	NA	NA	-102253	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.005000	0.402985	
mm_97007.1	chr11	70884714	70884914	+	1	NA	NA	NA	40053	NM_001291142	54189	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0.010000	0.442786	
mm_155615.1	chrX	83082313	83082513	+	1	NA	NA	NA	133543	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.000000	0.388060	-83(GTTTTTATAGGC,+,0.00)
mm_82633.1	chr9	21962292	21962492	-	1	NA	NA	NA	1184	NM_010149	13857	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	0.045000	0.611940	46(CCTTTTCTAGCG,+,0.00)
mm_39033.1	chr4	152291568	152291768	-	1	NA	NA	NA	-6	NM_008237	15207	Mm.3516	NM_008237	ENSMUSG00000028946	Hes3	Hes-3|bHLHb43	hairy and enhancer of split 3 (Drosophila)	protein-coding	0.020000	0.512438	
mm_54764.1	chr6	41311211	41311411	-	1	NA	NA	NA	3399	NM_001003405	103964	Mm.333022	NM_001003405	ENSMUSG00000036938	Try5	1810049H19Rik|Tc|Tesp4	trypsin 5	protein-coding	0.005000	0.492537	
mm_90935.1	chr10	12869536	12869736	-	1	NA	NA	NA	-7901	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.085000	0.587065	
mm_28329.1	chr3	89365093	89365293	-	1	NA	NA	NA	60	NM_029974	77772	Mm.164013	NM_029974	ENSMUSG00000042672	Dcst1	A330106H01Rik	DC-STAMP domain containing 1	protein-coding	0.025000	0.517413	
mm_168220.1	chr10	77169405	77169605	-	1	NA	NA	NA	-2975	NM_009929	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.020000	0.522388	
mm_2037.1	chr1	87214235	87214435	+	1	NA	NA	NA	396	NM_001039169	26987	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0.115000	0.701493	
mm_133385.1	chr16	84773765	84773965	+	1	NA	NA	NA	-258	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.035000	0.527363	2(ACTTTAAGAGCG,+,0.00)
mm_128099.1	chr15	27876367	27876567	-	1	NA	NA	NA	149381	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.045000	0.567164	
mm_103863.1	chr11	83393141	83393341	-	1	NA	NA	NA	-16831	NM_001013386	276952	Mm.66275	NM_001013386	ENSMUSG00000020684	Rasl10b	B230331P10Rik|Gm729|VTS58635	RAS-like, family 10, member B	protein-coding	0.010000	0.482587	
mm_75673.1	chr8	67910823	67911023	-	1	NA	NA	NA	23	NM_030263	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.000000	0.467662	
mm_143363.1	chr17	67349942	67350142	-	1	NA	NA	NA	4417	NM_008984	19274	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.025000	0.348259	
mm_76600.1	chr8	90301264	90301464	-	1	NA	NA	NA	46888	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding	0.010000	0.308458	
mm_113025.1	chr13	22049746	22049946	+	1	NA	NA	NA	6616	NM_178198	319183	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	0.035000	0.517413	-83(CCCTATATACAC,+,0.00)
mm_93297.1	chr10	96595513	96595713	-	1	NA	NA	NA	-21388	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.020000	0.472637	
mm_96020.1	chr11	59542967	59543167	+	1	NA	NA	NA	381	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.025000	0.482587	-52(CTTTTAATACCA,+,0.00)
mm_102582.1	chr11	61808548	61808748	-	1	NA	NA	NA	46444	NM_013881	29869	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.000000	0.407960	
mm_29359.1	chr3	108562066	108562266	-	1	NA	NA	NA	300	NM_026198	67495	Mm.32615	NM_026198	ENSMUSG00000068732	Tmem167b	2010200O16Rik	transmembrane protein 167B	protein-coding	0.050000	0.666667	
mm_135542.1	chr16	49783343	49783543	-	1	NA	NA	NA	-72211	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.000000	0.373134	
mm_151436.1	chr19	57360657	57360857	+	1	NA	NA	NA	142	NR_040316	320879	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	0.095000	0.636816	
mm_2708.1	chr1	128103204	128103404	+	1	NA	NA	NA	-2	NM_181750	226412	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	0.080000	0.577114	
mm_102622.1	chr11	62466469	62466669	-	1	NA	NA	NA	8109	NM_001039536	327942	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.005000	0.532338	52(GCTCCTAAAAGG,-,0.00)
mm_94367.1	chr11	5039058	5039258	+	1	NA	NA	NA	-18970	NM_145216	75668	Mm.374836	NM_145216	ENSMUSG00000034209	Rasl10a	2210403B10Rik|AI852688	RAS-like, family 10, member A	protein-coding	0.015000	0.547264	
mm_63347.1	chr7	126975520	126975720	+	1	NA	NA	NA	-294	NM_026638	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.020000	0.517413	
mm_96263.1	chr11	62648674	62648874	+	1	NA	NA	NA	110	NM_175002	216829	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	0.090000	0.716418	
mm_136962.1	chr17	15597803	15598003	+	1	NA	NA	NA	-33885	NR_045431	71008	Mm.399492	NR_045431		4933401D09Rik	-	RIKEN cDNA 4933401D09 gene	ncRNA	0.015000	0.353234	
mm_19975.1	chr2	118296832	118297032	-	1	NA	NA	NA	-7982	NR_045919	73358	Mm.437192	NR_045919	ENSMUSG00000085889	1700054M17Rik	-	RIKEN cDNA 1700054M17 gene	ncRNA	0.015000	0.412935	5(CCTTAAATAGCT,+,0.00)
mm_25138.1	chr3	102506527	102506727	+	1	NA	NA	NA	36708	NM_013609	18049	Mm.1259	NM_013609	ENSMUSG00000027859	Ngf	Ngfb	nerve growth factor	protein-coding	0.000000	0.393035	
mm_46316.1	chr5	100599166	100599366	-	1	NA	NA	NA	-27061	NM_139198	231507	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.025000	0.407960	
mm_72945.1	chr8	92097214	92097414	+	1	NA	NA	NA	258806	NR_110452	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	0.010000	0.517413	
mm_124109.1	chr14	79467289	79467489	-	1	NA	NA	NA	-13805	NM_007920	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.025000	0.487562	
mm_30826.1	chr4	21874011	21874211	+	1	NA	NA	NA	-5564	NM_172687	230027	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	0.055000	0.497512	
mm_78724.1	chr9	41580610	41580810	+	1	NA	NA	NA	-543	NR_015483	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.025000	0.432836	
mm_128074.1	chr15	27663331	27663531	-	1	NA	NA	NA	18111	NM_001242424	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.010000	0.442786	
mm_66366.1	chr7	43533084	43533284	-	1	NA	NA	NA	-13	NM_021293	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.010000	0.482587	
mm_122371.1	chr14	39472829	39473029	-	1	NA	NA	NA	159	NM_001190187	18183	Mm.258705	NM_008734	ENSMUSG00000041014	Nrg3	ska	neuregulin 3	protein-coding	0.170000	0.855721	
mm_2765.1	chr1	130550914	130551114	+	1	NA	NA	NA	78592	NM_009581	22789	Mm.4644	NM_009581	ENSMUSG00000042554	Zp3r	AV264399|SP56	zona pellucida 3 receptor	protein-coding	0.015000	0.497512	
mm_81773.1	chr9	114515632	114515832	+	1	NA	NA	NA	-19188	NM_009916	12773	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	0.040000	0.592040	
mm_91592.1	chr10	40348558	40348758	-	1	NA	NA	NA	-650	NM_001291817	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.050000	0.452736	
mm_125348.1	chr15	39198015	39198215	+	1	NA	NA	NA	-171	NM_001256382	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.095000	0.721393	
mm_147052.1	chr18	34931918	34932118	-	1	NA	NA	NA	-15	NM_144866	225363	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.085000	0.666667	
mm_84615.1	chr9	70457791	70457991	-	1	NA	NA	NA	-36337	NM_007630	12442	Mm.22592	NM_007630	ENSMUSG00000032218	Ccnb2	CycB2	cyclin B2	protein-coding	0.010000	0.452736	
mm_152742.1	chr19	19050853	19051053	-	1	NA	NA	NA	-49836	NM_001289921	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.000000	0.333333	
mm_123167.1	chr14	57328281	57328481	-	1	NA	NA	NA	70102	NM_030004	68631	Mm.25539	NM_030004	ENSMUSG00000021947	Cryl1	1110025H08Rik|A230106J09Rik|C85932|gul3dh	crystallin, lambda 1	protein-coding	0.005000	0.427861	
mm_134621.1	chr16	21369648	21369848	-	1	NA	NA	NA	-36392	NR_131983	76222	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0.020000	0.557214	
mm_7953.1	chr1	133915318	133915518	-	1	NA	NA	NA	5983	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.015000	0.552239	
mm_166287.1	chr5	98167287	98167487	+	1	NA	NA	NA	-13482	NM_029947	77630	Mm.332511	NM_029947	ENSMUSG00000035456	Prdm8	4930565F05Rik|PFM5	PR domain containing 8	protein-coding	0.095000	0.691542	
mm_103350.1	chr11	74829797	74829997	-	1	NA	NA	NA	-1027	NM_010813	17428	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.065000	0.592040	
mm_20663.1	chr2	132118670	132118870	-	1	NA	NA	NA	26338	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.000000	0.358209	
mm_48440.1	chr5	140629374	140629574	-	1	NA	NA	NA	19557	NM_001308040	78339	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.010000	0.562189	
mm_89002.1	chr10	81620453	81620653	+	1	NA	NA	NA	6769	NM_001163430	50721	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0.015000	0.467662	
mm_89276.1	chr10	87861201	87861401	+	1	NA	NA	NA	190	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.020000	0.497512	
mm_54426.1	chr6	33248785	33248985	-	1	NA	NA	NA	-205	NM_001347089	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.015000	0.407960	
mm_144716.1	chr18	35118817	35119017	+	1	NA	NA	NA	5	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.150000	0.781095	
mm_5036.1	chr1	193325905	193326105	+	1	NA	NA	NA	23762	NM_001277928	16780	Mm.435441	NM_008484	ENSMUSG00000026639	Lamb3	-	laminin, beta 3	protein-coding	0.025000	0.587065	
mm_51485.1	chr6	83053783	83053983	+	1	NA	NA	NA	-638	NR_125891	11993	Mm.386752	NM_007517	ENSMUSG00000068328	Aup1	AA589454	ancient ubiquitous protein 1	protein-coding	0.030000	0.537313	
mm_138918.1	chr17	43607197	43607397	+	1	NA	NA	NA	-15788	NR_045444	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.020000	0.457711	
mm_111422.1	chr12	91589861	91590061	-	1	NA	NA	NA	-312	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.135000	0.746269	-33(CGCTATATAAAG,-,0.00),-31(CTATATAAAGGG,+,0.00),-31(CTATATAAAGGG,-,0.00)
mm_85029.1	chr9	88462918	88463118	-	1	NA	NA	NA	19379	NM_019666	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.005000	0.373134	
mm_148015.1	chr18	68300233	68300433	-	1	NA	NA	NA	0	NM_153794	108654	Mm.125857	NM_153794	ENSMUSG00000038121	Fam210a	4933403F05Rik|AA987140|AV134576|AW491926	family with sequence similarity 210, member A	protein-coding	0.110000	0.641791	
mm_170840.1	chr2	177294335	177294535	+	1	NA	NA	NA	-170307	NM_001177568	628308	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420|OTTMUSG00000016588	zinc finger protein 970	protein-coding	0.015000	0.492537	
mm_32868.1	chr4	118429653	118429853	+	1	NA	NA	NA	52	NM_001039176	54325	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	0.015000	0.621891	
mm_1284.1	chr1	64088094	64088294	+	1	NA	NA	NA	33195	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.005000	0.417910	
mm_164241.1	chr15	94137676	94137876	-	1	NA	NA	NA	-109426	NR_045629	328594	Mm.135523	NR_045629		D630010B17Rik	Gm811	RIKEN cDNA D630010B17 gene	ncRNA	0.050000	0.472637	
mm_34831.1	chr4	155235404	155235604	+	1	NA	NA	NA	-12969	NM_011385	20481	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.040000	0.631841	
mm_105926.1	chr11	115066561	115066761	-	1	NA	NA	NA	-4622	NM_172050	217306	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.010000	0.507463	
mm_69438.1	chr7	132910863	132911063	-	1	NA	NA	NA	-38659	NM_207302	360216	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0.010000	0.412935	
mm_14396.1	chr2	129831972	129832172	+	1	NA	NA	NA	-30613	NR_029452	654409	Mm.305555	NR_029452		4932416H05Rik	-	RIKEN cDNA 4932416H05 gene	ncRNA	0.000000	0.308458	
mm_153011.1	chr19	30549418	30549618	-	1	NA	NA	NA	-22	NM_010051	13380	Mm.214717	NM_010051	ENSMUSG00000024868	Dkk1	mdkk-1	dickkopf WNT signaling pathway inhibitor 1	protein-coding	0.045000	0.616915	-35(GAGTATAAAGGC,-,0.00)
mm_172135.1	chr6	35118205	35118405	-	1	NA	NA	NA	15432	NM_001164412	53621	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0.020000	0.432836	85(CCTTTTCGAGAC,+,0.00)
mm_40349.1	chr5	45669905	45670105	+	1	NA	NA	NA	80	NM_019438	54392	Mm.32012	NM_019438	ENSMUSG00000015880	Ncapg	5730507H05Rik|Hcapg|MFT.M05.13	non-SMC condensin I complex, subunit G	protein-coding	0.095000	0.646766	
mm_69247.1	chr7	127824425	127824625	-	1	NA	NA	NA	6	NM_024414	56216	Mm.439759	NM_024414	ENSMUSG00000030806	Stx1b	Stx1b2|Stx1bl|Syn1b	syntaxin 1B	protein-coding	0.075000	0.761194	
mm_102453.1	chr11	59809935	59810135	-	1	NA	NA	NA	4	NM_001271356	216805	Mm.339640	NM_146018	ENSMUSG00000032633	Flcn	AU014660|B430214A04Rik|Bhd|FLCL	folliculin	protein-coding	0.085000	0.592040	
mm_5080.1	chr1	4409132	4409332	-	1	NA	NA	NA	9	NM_001195662	19888	Mm.294263	NM_011283	ENSMUSG00000025900	Rp1	Dcdc3|Orp1|Rp1h|mG145	retinitis pigmentosa 1 (human)	protein-coding	0.000000	0.427861	
mm_166667.1	chr6	90754889	90755089	-	1	NA	NA	NA	-38460	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.005000	0.567164	
mm_137895.1	chr17	31681225	31681425	+	1	NA	NA	NA	3394	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.015000	0.587065	
mm_96186.1	chr11	61683987	61684187	+	1	NA	NA	NA	-323	NM_178618	69640	Mm.458559	NM_178618	ENSMUSG00000042377	Fam83g	2310040C09Rik|AI506990|wly	family with sequence similarity 83, member G	protein-coding	0.090000	0.701493	
mm_159785.1	chr5	107331003	107331203	+	1	NA	NA	NA	-91	NM_001079873	114642	Mm.182836	NM_054054	ENSMUSG00000029279	Brdt	7420412D09Rik|Brd6|Fsrg3	bromodomain, testis-specific	protein-coding	0.085000	0.656716	57(TCCCATAAAGGC,-,0.00)
mm_143226.1	chr17	63312860	63313060	-	1	NA	NA	NA	13	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.005000	0.427861	
mm_26496.1	chr3	145576373	145576573	+	1	NA	NA	NA	257	NM_001346521	229937	Mm.24586	NM_001081094	ENSMUSG00000074182	Znhit6	2410019A14Rik	zinc finger, HIT type 6	protein-coding	0.055000	0.631841	
mm_94991.1	chr11	31871408	31871608	+	1	NA	NA	NA	568	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.045000	0.621891	
mm_112894.1	chr13	20885187	20885387	+	1	NA	NA	NA	91174	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.373134	
mm_121036.1	chr14	79898345	79898545	+	1	NA	NA	NA	-29269	NR_033535	100038734	Mm.387484	NR_033535		Gm10845	ENSMUSG00000075496	predicted gene 10845	ncRNA	0.020000	0.552239	
mm_158521.1	chrX	143827282	143827482	-	1	NA	NA	NA	30	NM_007603	12338	Mm.30290	NM_007603	ENSMUSG00000067276	Capn6	-	calpain 6	protein-coding	0.015000	0.532338	
mm_57119.1	chr6	122596720	122596920	-	1	NA	NA	NA	5624	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.030000	0.512438	
mm_5739.1	chr1	45344953	45345153	-	1	NA	NA	NA	33515	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.000000	0.412935	
mm_95078.1	chr11	32674389	32674589	+	1	NA	NA	NA	31934	NM_001271347	103583	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.010000	0.452736	
mm_155417.1	chrX	73490762	73490962	+	1	NA	NA	NA	7261	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.005000	0.552239	
mm_33950.1	chr4	137424765	137424965	+	1	NA	NA	NA	5655	NM_026419	67868	Mm.297477	NM_026419	ENSMUSG00000023433	Cela3b	0910001F22Rik|2310074F01Rik|AI504000|Ela3|Ela3b	chymotrypsin-like elastase family, member 3B	protein-coding	0.025000	0.547264	
mm_62428.1	chr7	101348045	101348245	+	1	NA	NA	NA	76	NM_001040111	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.120000	0.691542	
mm_153217.1	chr19	34747342	34747542	-	1	NA	NA	NA	-331	NM_172838	240638	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0.040000	0.582090	
mm_79942.1	chr9	65914231	65914431	+	1	NA	NA	NA	5321	NM_173185	214897	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	0.010000	0.427861	47(GCTTTTATAGCA,+,0.00)
mm_132553.1	chr16	37883787	37883987	+	1	NA	NA	NA	15487	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.020000	0.447761	3(TTTTTAATAGTC,+,0.00)
mm_79203.1	chr9	48817480	48817680	+	1	NA	NA	NA	18365	NM_001033324	235320	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0.020000	0.552239	
mm_145642.1	chr18	61117567	61117767	+	1	NA	NA	NA	199	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.015000	0.492537	
mm_13441.1	chr2	105126730	105126930	+	1	NA	NA	NA	301	NM_144783	22431	Mm.389339	NM_144783	ENSMUSG00000016458	Wt1	D630046I19Rik|Wt-1	Wilms tumor 1 homolog	protein-coding	0.110000	0.741294	
mm_64528.1	chr7	143978847	143979047	+	1	NA	NA	NA	-30307	NR_037292	100526562		NR_037292	ENSMUSG00000093221	Mir3105	mmu-mir-3105	microRNA 3105	ncRNA	0.095000	0.706468	
mm_16955.1	chr2	17390795	17390995	-	1	NA	NA	NA	-172619	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	0.015000	0.402985	
mm_84595.1	chr9	70037856	70038056	-	1	NA	NA	NA	132	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.000000	0.452736	-81(CTCTTTATAAGG,-,0.00),-79(CTTTATAAGGGA,+,0.00)
mm_67383.1	chr7	79842223	79842423	-	1	NA	NA	NA	29	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.030000	0.582090	
mm_20743.1	chr2	140019361	140019561	-	1	NA	NA	NA	47344	NM_001159640	75812	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0.000000	0.373134	
mm_41955.1	chr5	105816560	105816760	+	1	NA	NA	NA	-59908	NR_030777	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.010000	0.358209	
mm_2272.1	chr1	91250204	91250404	+	1	NA	NA	NA	-15	NM_026454	67921	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0.085000	0.597015	-31(TTTTTTAAAGTG,+,0.00)
mm_155515.1	chrX	74204820	74205020	+	1	NA	NA	NA	27661	NM_031379	83553	Mm.25057	NM_031379	ENSMUSG00000031397	Tktl1	C79967	transketolase-like 1	protein-coding	0.010000	0.398010	
mm_146468.1	chr18	87756184	87756384	+	1	NA	NA	NA	1044219	NM_172633	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.025000	0.432836	
mm_116569.1	chr13	47098159	47098359	-	1	NA	NA	NA	7962	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.010000	0.363184	
mm_22726.1	chr3	19644423	19644623	+	1	NA	NA	NA	63	NM_001081281	381485	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0.020000	0.512438	
mm_91936.1	chr10	60724246	60724446	-	1	NA	NA	NA	-27856	NM_023370	22295	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0.020000	0.537313	
mm_43081.1	chr5	124447053	124447253	+	1	NA	NA	NA	449	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.015000	0.487562	
mm_149009.1	chr19	8724996	8725196	+	1	NA	NA	NA	-770	NR_004445	100127111	Mm.292489	NR_004445	ENSMUSG00000065087	Snord22	Rnu22|U22	small nucleolar RNA, C/D box 22	snoRNA	0.000000	0.422886	
mm_104427.1	chr11	94944533	94944733	-	1	NA	NA	NA	8409	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.010000	0.572139	
mm_151773.1	chr19	5295314	5295514	-	1	NA	NA	NA	41	NM_030109	319322	Mm.196532	NM_030109	ENSMUSG00000024853	Sf3b2	145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150	splicing factor 3b, subunit 2	protein-coding	0.075000	0.606965	
mm_106610.1	chr11	120807758	120807958	-	1	NA	NA	NA	-11463	NM_026824	68730	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0.030000	0.621891	
mm_62599.1	chr7	105736571	105736771	+	1	NA	NA	NA	-54	NM_010562	16202	Mm.274846	NM_010562	ENSMUSG00000030890	Ilk	AA511515|ESTM24	integrin linked kinase	protein-coding	0.130000	0.766169	
mm_66348.1	chr7	43518454	43518654	-	1	NA	NA	NA	-12616	NM_028737	74054	Mm.195732	NM_028737	ENSMUSG00000013353	4931406B18Rik	4930538L19Rik	RIKEN cDNA 4931406B18 gene	protein-coding	0.045000	0.577114	
mm_144929.1	chr18	37707111	37707311	+	1	NA	NA	NA	-18	NM_033589	93714	Mm.247203	NM_033589	ENSMUSG00000103793	Pcdhga6	-	protocadherin gamma subfamily A, 6	protein-coding	0.030000	0.547264	0(GTCTTTAAAAAG,-,0.00),2(CTTTAAAAAGCC,+,0.00)
mm_59755.1	chr7	28825208	28825408	+	1	NA	NA	NA	-30	NM_016772	51798	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.085000	0.592040	
mm_8921.1	chr1	163314351	163314551	-	1	NA	NA	NA	-801	NM_175686	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.020000	0.552239	
mm_112320.1	chr12	115194023	115194223	-	1	NA	NA	NA	501671	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.005000	0.432836	
mm_141821.1	chr17	34615872	34616072	-	1	NA	NA	NA	-1	NM_152922	81701	Mm.231343	NM_152922	ENSMUSG00000015467	Egfl8	Ng3	EGF-like domain 8	protein-coding	0.015000	0.542289	
mm_147243.1	chr18	38349843	38350043	-	1	NA	NA	NA	-10950	NM_011937	26384	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.025000	0.412935	
mm_8724.1	chr1	160047414	160047614	-	1	NA	NA	NA	3134	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.015000	0.477612	68(CCCTTTAAGCTG,+,0.00)
mm_135280.1	chr16	38447368	38447568	-	1	NA	NA	NA	5221	NM_007414	11544	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.075000	0.646766	
mm_167951.1	chrX	139807411	139807611	+	1	NA	NA	NA	6703	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.005000	0.457711	
mm_86093.1	chr9	115034928	115035128	-	1	NA	NA	NA	-32251	NM_148958	74486	Mm.458474	NM_148958	ENSMUSG00000040875	Osbpl10	4933433D06Rik|C820004B04Rik|OPR-10|ORP-10	oxysterol binding protein-like 10	protein-coding	0.015000	0.537313	
mm_56928.1	chr6	119480377	119480577	-	1	NA	NA	NA	809	NM_133940	101358	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.080000	0.656716	
mm_43453.1	chr5	136171472	136171672	+	1	NA	NA	NA	-916	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.035000	0.557214	
mm_48092.1	chr5	137032326	137032526	-	1	NA	NA	NA	2131	NM_001039385	381677	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	0.080000	0.631841	
mm_71257.1	chr8	40917488	40917688	+	1	NA	NA	NA	-8645	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.010000	0.383085	
mm_138879.1	chr17	43360273	43360473	+	1	NA	NA	NA	-29093	NM_001081178	224792	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	0.035000	0.572139	
mm_25793.1	chr3	127544991	127545191	+	1	NA	NA	NA	-137	NR_030403	723948		NR_030403	ENSMUSG00000076252	Mir302b	Mirn302b|mir-302b	microRNA 302b	ncRNA	0.030000	0.447761	
mm_167402.1	chr8	103590842	103591042	-	1	NA	NA	NA	-12857	NR_045730	71058	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0.010000	0.507463	
mm_24801.1	chr3	95550027	95550227	+	1	NA	NA	NA	-9550	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.010000	0.452736	
mm_104504.1	chr11	95961581	95961781	-	1	NA	NA	NA	1702	NR_037223	100526468		NR_037223	ENSMUSG00000093358	Mir3063	mmu-mir-3063	microRNA 3063	ncRNA	0.010000	0.258706	
mm_13026.1	chr2	91044854	91045054	+	1	NA	NA	NA	-9062	NM_008948	19182	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	0.050000	0.616915	
mm_159480.1	chr4	35151929	35152129	+	1	NA	NA	NA	-26	NM_199157	387510	Mm.386929	NM_199157	ENSMUSG00000042993	Ifnk	-	interferon kappa	protein-coding	0.020000	0.437811	-33(AGGTATATAAGA,-,0.00),56(GTTTTTATGGCT,+,0.00)
mm_53985.1	chr6	6869396	6869596	-	1	NA	NA	NA	37	NR_015388	320038	Mm.94021	NR_015388		Dlx6os1	A230055N17Rik|Dlx6as1|Evf-1|Evf-2|Evf1|Evf1/2|Evf2|Shhrs|mEvf-1	distal-less homeobox 6, opposite strand 1	ncRNA	0.010000	0.398010	
mm_113642.1	chr13	42149254	42149454	+	1	NA	NA	NA	97333	NM_007772	110521	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.005000	0.452736	
mm_130766.1	chr15	101373633	101373833	-	1	NA	NA	NA	-3608	NM_028770	74127	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0.015000	0.522388	
mm_159756.1	chr5	88487861	88488061	+	1	NA	NA	NA	-14	NM_017468	13801	Mm.8014	NM_017468	ENSMUSG00000029286	Enam	abte	enamelin	protein-coding	0.000000	0.363184	
mm_112927.1	chr13	20956620	20956820	+	1	NA	NA	NA	116579	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.005000	0.467662	
mm_6092.1	chr1	63214156	63214356	-	1	NA	NA	NA	25	NM_146250	241070	Mm.103354	NM_146250	ENSMUSG00000046856	Gpr1	-	G protein-coupled receptor 1	protein-coding	0.025000	0.512438	
mm_82926.1	chr9	35117626	35117826	-	1	NA	NA	NA	-916	NM_009178	20443	Mm.275973	NM_009178	ENSMUSG00000032038	St3gal4	Siat4c	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	protein-coding	0.010000	0.537313	
mm_142431.1	chr17	45570254	45570454	-	1	NA	NA	NA	2907	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.025000	0.472637	49(TTCTATAAGAGC,-,0.00)
mm_133713.1	chr16	93607723	93607923	+	1	NA	NA	NA	-14	NM_007620	12408	Mm.26940	NM_007620	ENSMUSG00000051483	Cbr1	AW261796|CR|Cbr	carbonyl reductase 1	protein-coding	0.055000	0.537313	
mm_74746.1	chr8	18990935	18991135	-	1	NA	NA	NA	20	NM_181683	353320	Mm.270483	NM_181683	ENSMUSG00000053695	Defb37	BD-37	defensin beta 37	protein-coding	0.000000	0.442786	
mm_88818.1	chr10	80802301	80802501	+	1	NA	NA	NA	-2847	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.015000	0.572139	
mm_82569.1	chr9	21078546	21078746	-	1	NA	NA	NA	-3058	NR_106050	102465656		NR_106050	ENSMUSG00000098907	Mir7082	Gm27933|mmu-mir-7082	microRNA 7082	ncRNA	0.005000	0.512438	
mm_25213.1	chr3	103846713	103846913	+	1	NA	NA	NA	-12982	NR_104070	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.025000	0.487562	
mm_53986.1	chr6	6869428	6869628	-	1	NA	NA	NA	5	NR_015388	320038	Mm.94021	NR_015388		Dlx6os1	A230055N17Rik|Dlx6as1|Evf-1|Evf-2|Evf1|Evf1/2|Evf2|Shhrs|mEvf-1	distal-less homeobox 6, opposite strand 1	ncRNA	0.005000	0.398010	
mm_3397.1	chr1	143641203	143641403	+	1	NA	NA	NA	606	NM_020025	26878	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.020000	0.407960	
mm_157607.1	chrX	53670424	53670624	-	1	NA	NA	NA	-116	NM_001018063	553127	Mm.328602	NM_001018063	ENSMUSG00000067924	Cxx1b	Mart8c	CAAX box 1B	protein-coding	0.035000	0.527363	
mm_82747.1	chr9	26804351	26804551	-	1	NA	NA	NA	1966	NM_153803	244757	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0.000000	0.497512	
mm_37327.1	chr4	119492454	119492654	-	1	NA	NA	NA	44	NM_177572	194237	Mm.206201	NM_177572	ENSMUSG00000048899	Rimkla	B930030J24|NAAGS|NAAGS-II|Rimk	ribosomal modification protein rimK-like family member A	protein-coding	0.175000	0.776119	
mm_126354.1	chr15	79932791	79932991	+	1	NA	NA	NA	-245	NM_144811	52609	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	0.035000	0.562189	
mm_143864.1	chr17	84186545	84186745	-	1	NA	NA	NA	1302	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.105000	0.656716	
mm_25891.1	chr3	131110254	131110454	+	1	NA	NA	NA	57	NM_001276402	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.120000	0.701493	
mm_55812.1	chr6	83033242	83033442	-	1	NA	NA	NA	129	NM_010070	13448	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.070000	0.592040	
mm_104642.1	chr11	97536839	97537039	-	1	NA	NA	NA	-36599	NM_001289118	100141474	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.045000	0.621891	
mm_39263.1	chr5	3571500	3571700	+	1	NA	NA	NA	-116	NM_029843	77036	Mm.389069	NM_029843	ENSMUSG00000008307	1700109H08Rik	-	RIKEN cDNA 1700109H08 gene	protein-coding	0.005000	0.467662	
mm_29669.1	chr3	122619643	122619843	-	1	NA	NA	NA	-29	NM_153118	214459	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	0.125000	0.791045	
mm_97796.1	chr11	82951253	82951453	+	1	NA	NA	NA	-749	NM_183201	327978	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	0.020000	0.577114	
mm_31737.1	chr4	63152547	63152747	+	1	NA	NA	NA	1525	NM_007443	11699	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.040000	0.577114	
mm_69626.1	chr7	137314320	137314520	-	1	NA	NA	NA	25	NM_001113415	13593	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.135000	0.731343	-100(TCCCATATATGG,-,0.00),-98(CCATATATGGCG,+,0.00)
mm_92306.1	chr10	75150000	75150200	-	1	NA	NA	NA	-61973	NM_153406	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.005000	0.582090	-34(CACTATAAAAGG,-,0.00)
mm_67449.1	chr7	80396870	80397070	-	1	NA	NA	NA	5842	NM_011046	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.025000	0.572139	
mm_20809.1	chr2	144331311	144331511	-	1	NA	NA	NA	-49	NM_152947	107586	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0.105000	0.671642	
mm_153338.1	chr19	38342550	38342750	-	1	NA	NA	NA	-53330	NM_175507	240660	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	0.015000	0.437811	-22(GGCTTTAAGAAG,-,0.00)
mm_153330.1	chr19	38124557	38124757	-	1	NA	NA	NA	154	NM_011255	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.125000	0.776119	
mm_51722.1	chr6	86943147	86943347	+	1	NA	NA	NA	-66589	NM_001170591	56748	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	0.010000	0.388060	
mm_18433.1	chr2	60842241	60842441	-	1	NA	NA	NA	39097	NM_001141932	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.010000	0.512438	
mm_118235.1	chr13	111490030	111490230	-	1	NA	NA	NA	-89	NM_001122963	73274	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.080000	0.756219	
mm_77141.1	chr8	111536321	111536521	-	1	NA	NA	NA	-219	NM_001168622	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.130000	0.786070	
mm_12919.1	chr2	84937565	84937765	+	1	NA	NA	NA	1019	NM_021398	58207	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	0.010000	0.517413	
mm_78838.1	chr9	44326454	44326654	+	1	NA	NA	NA	-291	NM_007875	13478	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	0.050000	0.527363	-60(CCCTTTAAACCC,+,0.00)
mm_106747.1	chr12	3954850	3955050	+	1	NA	NA	NA	5	NM_001278583	18976	Mm.277996	NM_008895	ENSMUSG00000020660	Pomc	ACTH|BE|Beta-LPH|Clip|Gamma-LPH|Npp|Pomc-1|Pomc1|alpha-MSH|alphaMSH|beta-MSH|gamma-MSH	pro-opiomelanocortin-alpha	protein-coding	0.050000	0.562189	-33(AAGTATAAAAGA,-,0.00)
mm_10529.1	chr2	16401933	16402133	+	1	NA	NA	NA	45729	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.010000	0.378109	
mm_117355.1	chr13	69772530	69772730	-	1	NA	NA	NA	-32733	NM_001145162	76980	Mm.23960	NM_001145162	ENSMUSG00000052981	Ube2ql1	3110006E14Rik	ubiquitin-conjugating enzyme E2Q family-like 1	protein-coding	0.010000	0.512438	
mm_71949.1	chr8	70493023	70493223	+	1	NA	NA	NA	-8	NM_018827	12931	Mm.335584	NM_018827	ENSMUSG00000007888	Crlf1	CLF-1|CRLM-3|CRLM3|NR6|NR6.1	cytokine receptor-like factor 1	protein-coding	0.130000	0.761194	
mm_121804.1	chr14	20263347	20263547	-	1	NA	NA	NA	5715	NM_029006	74571	Mm.105571	NM_029006	ENSMUSG00000023387	Kcnk16	4731413G05Rik|TALK-1|TALK1	potassium channel, subfamily K, member 16	protein-coding	0.000000	0.557214	
mm_156702.1	chrX	159532669	159532869	+	1	NA	NA	NA	101	NM_001033472	382252	Mm.296254	NM_001033472	ENSMUSG00000044150	A830080D01Rik	2310067E24Rik|Gm1146	RIKEN cDNA A830080D01 gene	protein-coding	0.120000	0.726368	
mm_82504.1	chr9	20480747	20480947	-	1	NA	NA	NA	11899	NM_146221	235028	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	0.010000	0.407960	
mm_146197.1	chr18	76241342	76241542	+	1	NA	NA	NA	-259	NM_010754	17126	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0.160000	0.756219	
mm_134826.1	chr16	26073903	26074103	-	1	NA	NA	NA	31781	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.005000	0.407960	
mm_18423.1	chr2	60751703	60751903	-	1	NA	NA	NA	-29200	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.030000	0.442786	
mm_149467.1	chr19	11586507	11586707	+	1	NA	NA	NA	18197	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.005000	0.333333	-39(GTGCTTAAATGC,-,0.00)
mm_17734.1	chr2	32567646	32567846	-	1	NA	NA	NA	-3112	NM_010073	13481	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0.015000	0.626866	
mm_112012.1	chr12	110978905	110979105	-	1	NA	NA	NA	16	NM_175207	74251	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0.165000	0.796020	
mm_84066.1	chr9	58201270	58201470	-	1	NA	NA	NA	345	NM_001161535	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.020000	0.537313	
mm_1498.1	chr1	72087718	72087918	+	1	NA	NA	NA	-82623	NR_040454	71134	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.020000	0.383085	
mm_135261.1	chr16	37861083	37861283	-	1	NA	NA	NA	-7217	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.020000	0.497512	
mm_38815.1	chr4	148500222	148500422	-	1	NA	NA	NA	140	NM_001039554	654812	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	0.005000	0.522388	
mm_94785.1	chr11	22001745	22001945	+	1	NA	NA	NA	-194	NM_011023	18423	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.115000	0.756219	
mm_105405.1	chr11	103504823	103505023	-	1	NA	NA	NA	-92259	NM_183034	353047	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.040000	0.537313	
mm_24114.1	chr3	88145491	88145691	+	1	NA	NA	NA	3219	NM_001310593	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.005000	0.611940	
mm_129028.1	chr15	74958763	74958963	-	1	NA	NA	NA	3757	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.010000	0.542289	88(GGACCTAAAAGG,-,0.00)
mm_44709.1	chr5	30907586	30907786	-	1	NA	NA	NA	102	NM_001134692	67695	Mm.21450	NM_024460	ENSMUSG00000038803	Ost4	2310016E02Rik	oligosaccharyltransferase complex subunit 4 (non-catalytic)	protein-coding	0.095000	0.631841	
mm_166815.1	chr7	16400813	16401013	+	1	NA	NA	NA	-283	NM_198631	330474	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.115000	0.716418	
mm_33366.1	chr4	129513303	129513503	+	1	NA	NA	NA	-178	NM_010807	17357	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0.030000	0.582090	
mm_90548.1	chr10	128093154	128093354	+	1	NA	NA	NA	471	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.085000	0.656716	
mm_124859.1	chr15	9554492	9554692	+	1	NA	NA	NA	-24716	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.010000	0.407960	
mm_31464.1	chr4	49521155	49521355	+	1	NA	NA	NA	79	NM_001289901	230162	Mm.186994	NM_145547	ENSMUSG00000039634	Zfp189	BB131811|C430015I23Rik	zinc finger protein 189	protein-coding	0.060000	0.567164	
mm_56564.1	chr6	101377282	101377482	-	1	NA	NA	NA	515	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.150000	0.776119	
mm_3959.1	chr1	164115239	164115439	+	1	NA	NA	NA	75	NM_011347	20344	Mm.3337	NM_011347	ENSMUSG00000026580	Selp	CD62P|GMP-140|Grmp|LECAM3|PADGEM	selectin, platelet	protein-coding	0.020000	0.457711	65(CTCTTTATGGGA,+,0.00)
mm_7335.1	chr1	105356679	105356879	-	1	NA	NA	NA	-69	NM_001160368	320311	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	0.090000	0.711443	
mm_103914.1	chr11	83588611	83588811	-	1	NA	NA	NA	4376	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.015000	0.417910	-45(GTTTTTATAGAT,+,0.00)
mm_84338.1	chr9	64177700	64177900	-	1	NA	NA	NA	-1497	NM_183316	330959	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	0.020000	0.447761	-60(CCTTTAATAGTC,+,0.00)
mm_90762.1	chr10	5550703	5550903	-	1	NA	NA	NA	-111	NM_001347732	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.030000	0.686567	
mm_38990.1	chr4	151108161	151108361	-	1	NA	NA	NA	18691	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	0.130000	0.681592	
mm_43154.1	chr5	125532443	125532643	+	1	NA	NA	NA	125	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0.180000	0.830846	
mm_137548.1	chr17	27557384	27557584	+	1	NA	NA	NA	831	NM_001166477	111241	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1-rs1	ENSMUSG00000041059|Hmgi-rs1	high mobility group AT-hook I, related sequence 1	protein-coding	0.095000	0.696517	
mm_143450.1	chr17	70919914	70920114	-	1	NA	NA	NA	-66482	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.010000	0.393035	
mm_52046.1	chr6	97210297	97210497	+	1	NA	NA	NA	-395	NM_022992	65106	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	0.015000	0.353234	
mm_150505.1	chr19	39023283	39023483	+	1	NA	NA	NA	16364	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.005000	0.422886	-47(TCTTATAAAGTA,+,0.00)
mm_18459.1	chr2	62343543	62343743	-	1	NA	NA	NA	68588	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.000000	0.422886	
mm_122387.1	chr14	40907377	40907577	-	1	NA	NA	NA	-14512	NM_177816	328381	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.015000	0.557214	
mm_165941.1	chr4	78092110	78092310	-	1	NA	NA	NA	119685	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.005000	0.398010	-97(GGCTCTATAAGC,-,0.00)
mm_38863.1	chr4	149445947	149446147	-	1	NA	NA	NA	8921	NM_022020	63954	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	0.045000	0.542289	
mm_792.1	chr1	45338623	45338823	+	1	NA	NA	NA	27185	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.005000	0.383085	-61(GCTTTAATAGAC,+,0.00),43(AAGTATTAAAGG,-,0.00)
mm_141214.1	chr17	27167621	27167821	-	1	NA	NA	NA	43	NM_173027	271424	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	0.015000	0.592040	
mm_55592.1	chr6	71608053	71608253	-	1	NA	NA	NA	24533	NM_173001	104263	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0.025000	0.477612	-13(TCCTATAAAAGG,-,0.00)
mm_123867.1	chr14	72561547	72561747	-	1	NA	NA	NA	148356	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.030000	0.447761	55(GCTTATATGTAC,+,0.00)
mm_167025.1	chr7	67212289	67212489	+	1	NA	NA	NA	10069	NR_131044	76628	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0.020000	0.547264	
mm_123229.1	chr14	60026959	60027159	-	1	NA	NA	NA	59775	NM_015803	50769	Mm.319599	NM_015803	ENSMUSG00000021983	Atp8a2	AI415030|Atpc1b|agil|wl	ATPase, aminophospholipid transporter-like, class I, type 8A, member 2	protein-coding	0.010000	0.323383	
mm_22197.1	chr2	173291078	173291278	-	1	NA	NA	NA	-14645	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.035000	0.562189	
mm_44052.1	chr5	147894871	147895071	+	1	NA	NA	NA	-169	NM_027872	71706	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	0.080000	0.587065	
mm_93059.1	chr10	88765391	88765591	-	1	NA	NA	NA	34077	NM_025859	104303	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0.020000	0.502488	
mm_140194.1	chr17	83354970	83355170	+	1	NA	NA	NA	4139	NM_001114362	78798	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0.000000	0.323383	
mm_94249.1	chr11	3330697	3330897	+	1	NA	NA	NA	66	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.015000	0.567164	
mm_125791.1	chr15	74721593	74721793	+	1	NA	NA	NA	459	NM_198607	223626	Mm.268603	NM_198607	ENSMUSG00000056665	Them6	4930572J05Rik	thioesterase superfamily member 6	protein-coding	0.140000	0.646766	
mm_172249.1	chr6	69438695	69438895	-	1	NA	NA	NA	-111621	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.358209	-92(GTGTTTATAAGC,-,0.00)
mm_169491.1	chr14	75284493	75284693	+	1	NA	NA	NA	220	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0.110000	0.711443	
mm_166139.1	chr4	156241252	156241452	+	1	NA	NA	NA	5342	NM_021303	57741	Mm.423051	NM_021303	ENSMUSG00000095567	Noc2l	AA410003|AF155546|NIR	NOC2 like nucleolar associated transcriptional repressor	protein-coding	0.020000	0.507463	
mm_131571.1	chr16	18248843	18249043	+	1	NA	NA	NA	60	NM_001081000	15547	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	0.130000	0.706468	
mm_53849.1	chr6	149139699	149139899	+	1	NA	NA	NA	-1714	NM_001252096	320204	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	0.005000	0.398010	
mm_155114.1	chrX	48519686	48519886	+	1	NA	NA	NA	501	NM_011228	19337	Mm.2015	NM_011228	ENSMUSG00000031104	Rab33a	Rabs10	RAB33A, member RAS oncogene family	protein-coding	0.055000	0.552239	
mm_37640.1	chr4	128051069	128051269	-	1	NA	NA	NA	63125	NM_001281955	329942	Mm.421342	NM_001281955	ENSMUSG00000028804	Csmd2	Gm139	CUB and Sushi multiple domains 2	protein-coding	0.025000	0.452736	
mm_151250.1	chr19	53906483	53906683	+	1	NA	NA	NA	3232	NM_001168491	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.000000	0.497512	
mm_70146.1	chr7	143458740	143458940	-	1	NA	NA	NA	2210	NM_009876	12577	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.030000	0.412935	
mm_1149.1	chr1	60768110	60768310	+	1	NA	NA	NA	21822	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.010000	0.373134	
mm_160836.1	chr11	48979277	48979477	-	1	NA	NA	NA	4	NM_001114679	667214	Mm.441306	NM_001114679	ENSMUSG00000069893	9930111J21Rik1	9930111J21Rik|Iigp	RIKEN cDNA 9930111J21 gene 1	protein-coding	0.000000	0.462687	57(CTCCCTTTAAGG,-,0.00),59(CCCTTTAAGGAC,+,0.00)
mm_121400.1	chr14	119156274	119156474	+	1	NA	NA	NA	18109	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.015000	0.457711	
mm_50627.1	chr6	50261847	50262047	+	1	NA	NA	NA	-178	NM_018769	54722	Mm.248361	NM_018769	ENSMUSG00000029821	Dfna5	2310037D07Rik|4932441K13Rik|Dfna5h|EG14210|Fin15	deafness, autosomal dominant 5 (human)	protein-coding	0.045000	0.621891	
mm_255.1	chr1	20356369	20356569	+	1	NA	NA	NA	15	NR_045734	75028	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	0.005000	0.482587	
mm_66207.1	chr7	34305392	34305592	-	1	NA	NA	NA	-19883	NM_172741	233103	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	0.015000	0.427861	
mm_316.1	chr1	24615804	24616004	+	1	NA	NA	NA	-28467	NM_007733	12823	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.020000	0.393035	
mm_134538.1	chr16	19706219	19706419	-	1	NA	NA	NA	46	NM_177356	239739	Mm.258059	NM_177356	ENSMUSG00000041247	Lamp3	1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403	lysosomal-associated membrane protein 3	protein-coding	0.000000	0.477612	
mm_128091.1	chr15	27788267	27788467	-	1	NA	NA	NA	-106825	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.020000	0.562189	
mm_19742.1	chr2	104780484	104780684	-	1	NA	NA	NA	36112	NM_001123327	99003	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	0.015000	0.378109	
mm_8765.1	chr1	160792787	160792987	-	1	NA	NA	NA	51	NM_013862	29809	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0.145000	0.805970	
mm_93991.1	chr10	127522341	127522541	-	1	NA	NA	NA	3	NM_001252316	108037	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0.060000	0.477612	
mm_155253.1	chrX	57223934	57224134	+	1	NA	NA	NA	11891	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.010000	0.517413	
mm_53080.1	chr6	124939211	124939411	+	1	NA	NA	NA	7923	NM_001170341	30853	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.035000	0.537313	
mm_102985.1	chr11	69681900	69682100	-	1	NA	NA	NA	-30	NM_030702	80886	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0.145000	0.716418	
mm_138047.1	chr17	33925648	33925848	+	1	NA	NA	NA	-4146	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.025000	0.601990	
mm_92202.1	chr10	68136605	68136805	-	1	NA	NA	NA	142021	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.035000	0.606965	
mm_13915.1	chr2	120567565	120567765	+	1	NA	NA	NA	-6	NM_001177792	20619	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	0.110000	0.681592	
mm_46187.1	chr5	97919781	97919981	-	1	NA	NA	NA	111081	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.005000	0.378109	
mm_73390.1	chr8	105701559	105701759	+	1	NA	NA	NA	12	NM_001286345	56513	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0.100000	0.726368	
mm_66466.1	chr7	44929366	44929566	-	1	NA	NA	NA	24	NM_007458	11771	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	0.120000	0.731343	
mm_81510.1	chr9	110034741	110034941	+	1	NA	NA	NA	-17180	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.000000	0.467662	
mm_39163.1	chr4	155624467	155624667	-	1	NA	NA	NA	188	NR_040441	100502734	Mm.306018	NR_040441	ENSMUSG00000086682	Gm16023	OTTMUSG00000029160	predicted gene 16023	ncRNA	0.080000	0.597015	
mm_1018.1	chr1	58738886	58739086	+	1	NA	NA	NA	8434	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.025000	0.482587	
mm_112005.1	chr12	110858828	110859028	-	1	NA	NA	NA	8649	NM_028365	72805	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0.060000	0.557214	
mm_83547.1	chr9	46237306	46237506	-	1	NA	NA	NA	-1770	NM_001289756	11814	Mm.390161	NM_023114	ENSMUSG00000032081	Apoc3	apo-CIII|apoC-III	apolipoprotein C-III	protein-coding	0.015000	0.537313	-34(GGGTATAAATGG,-,0.00)
mm_77575.1	chr8	123515285	123515485	-	1	NA	NA	NA	70	NM_001170975	72185	Mm.27925	NM_028146	ENSMUSG00000031970	Dbndd1	2810427I04Rik|D8Ertd590e	dysbindin (dystrobrevin binding protein 1) domain containing 1	protein-coding	0.095000	0.751244	
mm_1623.1	chr1	74393175	74393375	+	1	NA	NA	NA	-1035	NR_029743	387219		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.020000	0.587065	
mm_74821.1	chr8	23035365	23035565	-	1	NA	NA	NA	366	NM_001277284	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.045000	0.547264	
mm_16888.1	chr2	13011579	13011779	-	1	NA	NA	NA	-815	NM_153155	227580	Mm.229322	NM_153155	ENSMUSG00000049630	C1ql3	1110065A22Rik|AI661623|C1ql|C1qtnf13|CTRP13|K100	C1q-like 3	protein-coding	0.055000	0.582090	
mm_123440.1	chr14	64949250	64949450	-	1	NA	NA	NA	507	NM_177338	219150	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.055000	0.626866	
mm_153563.1	chr19	42307009	42307209	-	1	NA	NA	NA	-26939	NR_037246	100526549		NR_037246	ENSMUSG00000093234	Mir3085	mir-3085|mmu-mir-3085	microRNA 3085	ncRNA	0.040000	0.597015	
mm_31603.1	chr4	57956846	57957046	+	1	NA	NA	NA	-535	NM_011660	22166	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.040000	0.537313	
mm_67462.1	chr7	80403935	80404135	-	1	NA	NA	NA	-1223	NM_011046	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.020000	0.427861	-56(ACTTTTAGAGAC,+,0.00)
mm_20822.1	chr2	145934610	145934810	-	1	NA	NA	NA	-10	NM_025820	66877	Mm.248755	NM_025820	ENSMUSG00000001767	Crnkl1	1200013P10Rik|5730590A01Rik|C80326|crn	Crn, crooked neck-like 1 (Drosophila)	protein-coding	0.100000	0.582090	
mm_105667.1	chr11	107427976	107428176	-	1	NA	NA	NA	42644	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.030000	0.497512	-33(AAGTATAAAGGG,-,0.00)
mm_167526.1	chr9	21287954	21288154	+	1	NA	NA	NA	-85	NM_145416	215194	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	0.070000	0.651741	
mm_57697.1	chr6	128523991	128524191	-	1	NA	NA	NA	2629	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.020000	0.432836	
mm_108152.1	chr12	76318959	76319159	+	1	NA	NA	NA	-5832	NM_001101471	238276	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.010000	0.492537	
mm_130975.1	chr15	103339993	103340193	-	1	NA	NA	NA	-7	NM_013866	29813	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.085000	0.716418	
mm_111426.1	chr12	91685997	91686197	-	1	NA	NA	NA	-95610	NM_175335	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.025000	0.626866	
mm_129513.1	chr15	79062605	79062805	-	1	NA	NA	NA	154	NM_144849	223690	Mm.24262	NM_144849	ENSMUSG00000033055	Ankrd54	C730048E16Rik|EST1068184|EST475269|Liar	ankyrin repeat domain 54	protein-coding	0.165000	0.761194	
mm_102070.1	chr11	52260509	52260709	-	1	NA	NA	NA	21986	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.015000	0.537313	
mm_7925.1	chr1	133899063	133899263	-	1	NA	NA	NA	8010	NM_054076	269120	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	0.020000	0.542289	
mm_110131.1	chr12	26444704	26444904	-	1	NA	NA	NA	11648	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.507463	
mm_167549.1	chr9	32143320	32143520	+	1	NA	NA	NA	27284	NM_001195632	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.000000	0.412935	
mm_82162.1	chr9	123781511	123781711	+	1	NA	NA	NA	14400	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.000000	0.393035	
mm_128175.1	chr15	34443151	34443351	-	1	NA	NA	NA	-18	NR_028101	666899	Mm.439801	NR_028101		Gm12191	OTTMUSG00000005566	ribosomal protein L30 pseudogene	pseudo	0.070000	0.587065	
mm_53246.1	chr6	127577851	127578051	+	1	NA	NA	NA	-24	NM_001033464	381812	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0.015000	0.552239	-30(GCTTATCAAGGC,+,0.00)
mm_146508.1	chr18	3337270	3337470	-	1	NA	NA	NA	219	NM_001110851	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.165000	0.761194	
mm_113693.1	chr13	43122759	43122959	+	1	NA	NA	NA	20	NM_001005748	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.030000	0.616915	
mm_43891.1	chr5	143980992	143981192	+	1	NA	NA	NA	33761	NM_177682	231874	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0.020000	0.611940	
mm_133522.1	chr16	90831040	90831240	+	1	NA	NA	NA	281	NM_001316761	70967	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	0.090000	0.721393	
mm_139309.1	chr17	48351053	48351253	+	1	NA	NA	NA	4752	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.020000	0.552239	
mm_103605.1	chr11	78437192	78437392	-	1	NA	NA	NA	-15107	NM_022411	20500	Mm.274058	NM_022411	ENSMUSG00000001095	Slc13a2	Nadc1|mNaDC-1	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2	protein-coding	0.020000	0.482587	
mm_104785.1	chr11	98683314	98683514	-	1	NA	NA	NA	860	NM_009439	22123	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0.020000	0.452736	
mm_83763.1	chr9	51963513	51963713	-	1	NA	NA	NA	-11	NM_001301728	14148	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	0.105000	0.656716	
mm_145929.1	chr18	67133466	67133666	+	1	NA	NA	NA	6	NM_010307	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.100000	0.716418	32(GCCTTTAAGGAG,+,0.00),33(CCTTTAAGGAGC,+,0.00)
mm_161349.1	chr14	54912561	54912761	-	1	NA	NA	NA	471	NM_021551	59049	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	0.100000	0.771144	
mm_44647.1	chr5	28209826	28210026	-	1	NA	NA	NA	242	NM_001310511	269637	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.105000	0.686567	
mm_118941.1	chr14	27307877	27308077	+	1	NA	NA	NA	-28060	NM_001289687	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.005000	0.417910	51(CTTTTTAGGGCT,+,0.00)
mm_106759.1	chr12	4234002	4234202	+	1	NA	NA	NA	75	NM_001204912	69709	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.045000	0.572139	
mm_157115.1	chrX	9439835	9440035	-	1	NA	NA	NA	29389	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.452736	
mm_170120.1	chr17	39846693	39846893	+	1	NA	NA	NA	3796	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.085000	0.567164	
mm_102700.1	chr11	66149219	66149419	-	1	NA	NA	NA	19232	NM_001099633	237806	Mm.264210	NM_001099633	ENSMUSG00000056752	Dnah9	9030022M04|A230091C01|C230051G16|D11Ertd686e|Dnahc9|mKIAA0357	dynein, axonemal, heavy chain 9	protein-coding	0.005000	0.323383	
mm_24933.1	chr3	96559650	96559850	+	1	NA	NA	NA	1793	NM_023719	56338	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.030000	0.532338	
mm_37956.1	chr4	133339109	133339309	-	1	NA	NA	NA	106	NM_199306	230796	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	0.085000	0.711443	
mm_92500.1	chr10	78351986	78352186	-	1	NA	NA	NA	-386	NM_053014	28169	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.170000	0.830846	
mm_29500.1	chr3	116007268	116007468	-	1	NA	NA	NA	38	NM_023214	66500	Mm.34550	NM_023214	ENSMUSG00000054414	Slc30a7	1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2	solute carrier family 30 (zinc transporter), member 7	protein-coding	0.130000	0.711443	
mm_40985.1	chr5	77266064	77266264	+	1	NA	NA	NA	670	NM_011263	19712	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.130000	0.791045	
mm_89146.1	chr10	86021818	86022018	+	1	NA	NA	NA	-11	NM_153195	69754	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	0.145000	0.711443	
mm_77222.1	chr8	115702948	115703148	-	1	NA	NA	NA	3846	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.000000	0.358209	
mm_7892.1	chr1	133332169	133332369	-	1	NA	NA	NA	5057	NM_178260	280287	Mm.458301	NM_178260	ENSMUSG00000098306	Kiss1	kisspeptin|metastatin	KiSS-1 metastasis-suppressor	protein-coding	0.000000	0.497512	
mm_112198.1	chr12	113425847	113426047	-	1	NA	NA	NA	-63618	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.015000	0.512438	
mm_138162.1	chr17	34261715	34261915	+	1	NA	NA	NA	-1412	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.010000	0.537313	
mm_504.1	chr1	37100566	37100766	+	1	NA	NA	NA	-117612	NM_001282010	12790	Mm.214224	NM_009918	ENSMUSG00000026114	Cnga3	CNG3	cyclic nucleotide gated channel alpha 3	protein-coding	0.020000	0.512438	
mm_9748.1	chr1	180693983	180694183	-	1	NA	NA	NA	2951	NM_013729	27217	Mm.103647	NM_013729	ENSMUSG00000026497	Mixl1	Mm1|Mml	Mix1 homeobox-like 1 (Xenopus laevis)	protein-coding	0.000000	0.298507	
mm_149136.1	chr19	9002719	9002919	+	1	NA	NA	NA	13535	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.005000	0.517413	
mm_30478.1	chr3	154821671	154821871	-	1	NA	NA	NA	110638	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.005000	0.323383	39(GTTTTTATATCC,+,0.00)
mm_6829.1	chr1	84204712	84204912	-	1	NA	NA	NA	14149	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.477612	
mm_42683.1	chr5	119831991	119832191	+	1	NA	NA	NA	-2572	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.040000	0.557214	
mm_89892.1	chr10	110793638	110793838	+	1	NA	NA	NA	48273	NM_178609	52679	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e	E2F transcription factor 7	protein-coding	0.015000	0.502488	
mm_9816.1	chr1	182020174	182020374	-	1	NA	NA	NA	-294	NM_010135	13800	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	enabled homolog (Drosophila)	protein-coding	0.150000	0.800995	
mm_166517.1	chr6	17306277	17306477	+	1	NA	NA	NA	42	NM_007616	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.040000	0.592040	
mm_37891.1	chr4	132533277	132533477	-	1	NA	NA	NA	2037	NM_007512	11983	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0.080000	0.606965	
mm_78214.1	chr9	21510509	21510709	+	1	NA	NA	NA	-375	NM_010744	17083	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.045000	0.542289	
mm_155747.1	chrX	96166977	96167177	+	1	NA	NA	NA	71032	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.005000	0.412935	
mm_154935.1	chrX	35891140	35891340	+	1	NA	NA	NA	2408	NM_001009947	75974	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	0.015000	0.383085	1(GCTTTTATGCAA,+,0.00)
mm_25256.1	chr3	104780725	104780925	+	1	NA	NA	NA	-231	NM_027982	71887	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	0.050000	0.517413	
mm_163254.1	chr11	109426922	109427122	+	1	NA	NA	NA	802	NM_001252193	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.030000	0.447761	
mm_85042.1	chr9	89092587	89092787	-	1	NA	NA	NA	148	NM_001170884	666747	Mm.425592	NM_001170884	ENSMUSG00000079162	Trim43b	EG666747|Gm8269	tripartite motif-containing 43B	protein-coding	0.000000	0.477612	-45(GTCTTTAGAGAC,+,0.00)
mm_35451.1	chr4	40279261	40279461	-	1	NA	NA	NA	60	NM_001033305	230075	Mm.1103	NM_001033305	ENSMUSG00000071014	Ndufb6	CI-B17|Gm137	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 6	protein-coding	0.090000	0.671642	
mm_95003.1	chr11	31874232	31874432	+	1	NA	NA	NA	3392	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.000000	0.353234	
mm_16587.1	chr2	3726698	3726898	-	1	NA	NA	NA	13340	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.020000	0.432836	
mm_103823.1	chr11	83012041	83012241	-	1	NA	NA	NA	8581	NM_001167743	276950	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0.015000	0.388060	
mm_118591.1	chr14	20655157	20655357	+	1	NA	NA	NA	1283	NM_021508	59011	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0.010000	0.462687	-29(TGCTCTTAAAAG,-,0.00),-27(CTCTTAAAAGTC,+,0.00)
mm_128817.1	chr15	67114799	67114999	-	1	NA	NA	NA	61983	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.010000	0.467662	
mm_149342.1	chr19	10850331	10850531	+	1	NA	NA	NA	7887	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.005000	0.383085	
mm_153373.1	chr19	40356535	40356735	-	1	NA	NA	NA	45675	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.010000	0.537313	
mm_153769.1	chr19	45631040	45631240	-	1	NA	NA	NA	29053	NM_013907	30838	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0.020000	0.562189	
mm_138022.1	chr17	33910334	33910534	+	1	NA	NA	NA	833	NM_001199733	13163	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0.025000	0.557214	
mm_39017.1	chr4	152131315	152131515	-	1	NA	NA	NA	-2490	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.085000	0.696517	
mm_150676.1	chr19	42052184	42052384	+	1	NA	NA	NA	56	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	0.010000	0.592040	
mm_75609.1	chr8	62123015	62123215	-	1	NA	NA	NA	78	NM_001136089	26359	Mm.42179	NM_011922	ENSMUSG00000031635	Anxa10	-	annexin A10	protein-coding	0.005000	0.437811	
mm_123317.1	chr14	62497239	62497439	-	1	NA	NA	NA	-41050	NM_172810	239134	Mm.236557	NM_172810	ENSMUSG00000021933	Gucy1b2	B930025B03|GC-SB2	guanylate cyclase 1, soluble, beta 2	protein-coding	0.005000	0.383085	
mm_110352.1	chr12	38730729	38730929	-	1	NA	NA	NA	-49253	NM_001347379	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.000000	0.542289	-34(CACTATAAAAGG,-,0.00)
mm_159700.1	chr5	26817297	26817497	+	1	NA	NA	NA	40	NM_010075	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.040000	0.606965	
mm_166212.1	chr5	52190440	52190640	-	1	NA	NA	NA	6	NR_104311	13204	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	0.155000	0.756219	
mm_46868.1	chr5	113830304	113830504	-	1	NA	NA	NA	97	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.030000	0.606965	
mm_76124.1	chr8	80869150	80869350	-	1	NA	NA	NA	11229	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.030000	0.532338	
mm_33206.1	chr4	126429632	126429832	+	1	NA	NA	NA	-190	NM_153402	214150	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0.100000	0.711443	
mm_52197.1	chr6	100527273	100527473	+	1	NA	NA	NA	-27	NR_040525	73395	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0.010000	0.507463	
mm_69714.1	chr7	140154570	140154770	-	1	NA	NA	NA	-11	NM_183147	212518	Mm.246858	NM_183147	ENSMUSG00000045733	Sprn	C630041J07	shadow of prion protein	protein-coding	0.070000	0.606965	
mm_91070.1	chr10	19008284	19008484	-	1	NA	NA	NA	3579	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.000000	0.452736	-88(CCTTATAGAATG,+,0.00)
mm_58787.1	chr7	16130058	16130258	+	1	NA	NA	NA	332	NM_148946	110891	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	0.045000	0.666667	
mm_146023.1	chr18	69519702	69519902	+	1	NA	NA	NA	174081	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.020000	0.472637	
mm_1726.1	chr1	75375198	75375398	+	1	NA	NA	NA	1	NM_007463	11790	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0.070000	0.676617	
mm_93082.1	chr10	89533470	89533670	-	1	NA	NA	NA	52	NM_001163504	20186	Mm.3095	NM_009108	ENSMUSG00000047638	Nr1h4	AI957360|Fxr|HRR1|RIP14|Rxrip14	nuclear receptor subfamily 1, group H, member 4	protein-coding	0.015000	0.542289	
mm_31946.1	chr4	86711002	86711202	+	1	NA	NA	NA	-37453	NM_184088	329877	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	0.005000	0.432836	
mm_45706.1	chr5	83355024	83355224	-	1	NA	NA	NA	71	NM_153801	243078	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding	0.015000	0.447761	
mm_69785.1	chr7	141094819	141095019	-	1	NA	NA	NA	5627	NM_023059	24058	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0.025000	0.572139	
mm_63846.1	chr7	135652391	135652591	+	1	NA	NA	NA	-177	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.020000	0.512438	
mm_123995.1	chr14	75786873	75787073	-	1	NA	NA	NA	64	NM_026232	67554	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0.125000	0.736318	
mm_133410.1	chr16	85056281	85056481	+	1	NA	NA	NA	84170	NR_045889	100038614	Mm.441351	NR_045889		Gm10791	ENSMUSG00000074933	predicted gene 10791	ncRNA	0.035000	0.572139	
mm_141752.1	chr17	34261491	34261691	-	1	NA	NA	NA	-1636	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.015000	0.527363	
mm_146530.1	chr18	5334220	5334420	-	1	NA	NA	NA	119	NM_178722	240186	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.120000	0.646766	
mm_162441.1	chr1	113194163	113194363	+	1	NA	NA	NA	-1329345	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0.000000	0.398010	
mm_170131.1	chr17	39847165	39847365	+	1	NA	NA	NA	4268	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.075000	0.522388	
mm_144637.1	chr18	32978498	32978698	+	1	NA	NA	NA	39557	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.005000	0.477612	
mm_55479.1	chr6	68910889	68911089	-	1	NA	NA	NA	416185	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.010000	0.368159	
mm_11966.1	chr2	53192072	53192272	+	1	NA	NA	NA	88	NM_022989	65103	Mm.37623	NM_022989	ENSMUSG00000026960	Arl6ip6	2310057C01Rik|2610529A11Rik|Aip-6	ADP-ribosylation factor-like 6 interacting protein 6	protein-coding	0.115000	0.666667	
mm_14372.1	chr2	129630023	129630223	+	1	NA	NA	NA	36954	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.005000	0.562189	
mm_134698.1	chr16	22656990	22657190	-	1	NA	NA	NA	141	NM_138650	110197	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0.075000	0.666667	
mm_147473.1	chr18	46741464	46741664	-	1	NA	NA	NA	15	NM_026217	67526	Mm.9852	NM_026217	ENSMUSG00000032905	Atg12	4931423H11Rik|A330058M13Rik|Apg12l|Atg12l	autophagy related 12	protein-coding	0.055000	0.587065	
mm_45722.1	chr5	86065389	86065589	-	1	NA	NA	NA	94	NM_001345902	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0.075000	0.532338	-94(GTCTTTAAAAAA,-,0.00)
mm_172830.1	chr9	20584646	20584846	-	1	NA	NA	NA	3418	NM_172919	244721	Mm.86627	NM_172919	ENSMUSG00000058192	Zfp846	2210010B09Rik|9130221F13|Znf846	zinc finger protein 846	protein-coding	0.020000	0.492537	
mm_141851.1	chr17	34801796	34801996	-	1	NA	NA	NA	2530	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.035000	0.636816	
mm_25653.1	chr3	121484640	121484840	+	1	NA	NA	NA	47604	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.000000	0.487562	
mm_35289.1	chr4	21767095	21767295	-	1	NA	NA	NA	16	NM_029840	77032	Mm.87238	NM_029840	ENSMUSG00000028251	Tstd3	2610029I01Rik	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding	0.030000	0.582090	
mm_153292.1	chr19	37376136	37376336	-	1	NA	NA	NA	-167	NM_010615	16551	Mm.42203	NM_010615	ENSMUSG00000012443	Kif11	Eg5|Kif8|Kifl1|Knsl1	kinesin family member 11	protein-coding	0.095000	0.646766	
mm_109227.1	chr12	108793838	108794038	+	1	NA	NA	NA	627	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.165000	0.731343	
mm_163467.1	chr12	102423587	102423787	-	1	NA	NA	NA	16126	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.045000	0.562189	
mm_95588.1	chr11	53324589	53324789	+	1	NA	NA	NA	0	NM_026479	67966	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0.065000	0.611940	
mm_10753.1	chr2	23197293	23197493	+	1	NA	NA	NA	-10083	NM_027635	70981	Mm.314026	NM_027635	ENSMUSG00000026774	4931423N10Rik	-	RIKEN cDNA 4931423N10 gene	protein-coding	0.000000	0.303483	
mm_165631.1	chr3	68584037	68584237	+	1	NA	NA	NA	11769	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.020000	0.587065	
mm_152217.1	chr19	8257548	8257748	-	1	NA	NA	NA	-38748	NM_001347426	236293	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	0.020000	0.368159	
mm_111443.1	chr12	98203576	98203776	-	1	NA	NA	NA	55783	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.025000	0.537313	
mm_47555.1	chr5	124391932	124392132	-	1	NA	NA	NA	33882	NM_001081203	243272	Mm.23879	NM_001081203	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch homolog 1 (Drosophila)	protein-coding	0.030000	0.467662	
mm_3367.1	chr1	138304677	138304877	+	1	NA	NA	NA	31039	NM_177397	338375	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.015000	0.522388	
mm_138899.1	chr17	43568523	43568723	+	1	NA	NA	NA	172	NM_013737	27226	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.035000	0.582090	
mm_126829.1	chr15	88862376	88862576	+	1	NA	NA	NA	282	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.150000	0.756219	
mm_10106.1	chr2	3636798	3636998	+	1	NA	NA	NA	-76560	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.015000	0.507463	
mm_10271.1	chr2	9882029	9882229	+	1	NA	NA	NA	883	NR_024257	381347	Mm.441450	NR_024257		4930412O13Rik	ENSMUSG00000075535|Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.020000	0.532338	
mm_98971.1	chr11	98685797	98685997	+	1	NA	NA	NA	3343	NM_009439	22123	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0.040000	0.547264	
mm_120979.1	chr14	78703462	78703662	+	1	NA	NA	NA	21527	NM_001081336	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.020000	0.477612	
mm_11940.1	chr2	52866544	52866744	+	1	NA	NA	NA	8776	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.015000	0.343284	60(GACTATTAAAGG,-,0.00)
mm_127782.1	chr15	3542303	3542503	-	1	NA	NA	NA	39439	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.000000	0.293532	
mm_167944.1	chrX	132146860	132147060	+	1	NA	NA	NA	1542033	NM_001105245	279653	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding	0.010000	0.358209	
mm_120773.1	chr14	73798781	73798981	+	1	NA	NA	NA	246095	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	0.010000	0.402985	
mm_38367.1	chr4	138367787	138367987	-	1	NA	NA	NA	68	NM_028176	72269	Mm.46182	NM_028176	ENSMUSG00000028755	Cda	2210401N16Rik	cytidine deaminase	protein-coding	0.060000	0.661692	
mm_65086.1	chr7	19260834	19261034	-	1	NA	NA	NA	10920	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.005000	0.691542	
mm_142656.1	chr17	47629012	47629212	-	1	NA	NA	NA	-1578	NM_198421	224836	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	0.045000	0.467662	
mm_32326.1	chr4	103978764	103978964	+	1	NA	NA	NA	-388674	NR_104385	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding	0.005000	0.308458	
mm_18451.1	chr2	60962792	60962992	-	1	NA	NA	NA	312	NM_020296	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.065000	0.661692	
mm_78675.1	chr9	40781053	40781253	+	1	NA	NA	NA	-20120	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.025000	0.487562	
mm_70487.1	chr8	12396242	12396442	+	1	NA	NA	NA	823	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.080000	0.701493	
mm_98641.1	chr11	96194244	96194444	+	1	NA	NA	NA	-17	NM_008267	15408	Mm.57221	NM_008267	ENSMUSG00000049604	Hoxb13	-	homeobox B13	protein-coding	0.065000	0.626866	
mm_103502.1	chr11	76577913	76578113	-	1	NA	NA	NA	-274	NM_198894	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.030000	0.532338	11(TGCCTTAAAAGA,-,0.00),12(GCCTTAAAAGAG,+,0.00)
mm_25853.1	chr3	129612763	129612963	+	1	NA	NA	NA	80477	NM_130450	170439	Mm.314113	NM_130450	ENSMUSG00000041220	Elovl6	C77826|FAE|LCE	ELOVL family member 6, elongation of long chain fatty acids (yeast)	protein-coding	0.065000	0.552239	
mm_12012.1	chr2	57367411	57367611	+	1	NA	NA	NA	129129	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.035000	0.447761	
mm_32191.1	chr4	101292164	101292364	+	1	NA	NA	NA	-26982	NM_146145	16451	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.105000	0.671642	
mm_113175.1	chr13	24813950	24814150	+	1	NA	NA	NA	12393	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.005000	0.323383	
mm_37478.1	chr4	123565496	123565696	-	1	NA	NA	NA	-50824	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.025000	0.487562	-78(TTCTATTTAGGG,-,0.00)
mm_119159.1	chr14	31640967	31641167	+	1	NA	NA	NA	10	NM_025295	26363	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0.065000	0.587065	
mm_106796.1	chr12	4907717	4907917	+	1	NA	NA	NA	-297	NM_145441	217379	Mm.259170	NM_145441	ENSMUSG00000020634	Ubxn2a	6330407P03Rik|Ubxd4	UBX domain protein 2A	protein-coding	0.095000	0.636816	
mm_94000.1	chr10	127594313	127594513	-	1	NA	NA	NA	26735	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.010000	0.497512	
mm_124165.1	chr14	93700726	93700926	-	1	NA	NA	NA	188062	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.432836	
mm_116534.1	chr13	45875748	45875948	-	1	NA	NA	NA	89143	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.010000	0.537313	
mm_53353.1	chr6	129350261	129350461	+	1	NA	NA	NA	117	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.005000	0.388060	
mm_166533.1	chr6	30079844	30080044	+	1	NA	NA	NA	3623	NM_001164229	18181	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	0.010000	0.427861	
mm_64304.1	chr7	141861896	141862096	+	1	NA	NA	NA	22924	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.005000	0.517413	
mm_83793.1	chr9	52287930	52288130	-	1	NA	NA	NA	-119919	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.010000	0.462687	
mm_73544.1	chr8	108724630	108724830	+	1	NA	NA	NA	10086	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.015000	0.467662	
mm_75877.1	chr8	70764971	70765171	-	1	NA	NA	NA	1592	NM_023065	65972	Mm.30241	NM_023065	ENSMUSG00000031838	Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	0.030000	0.592040	
mm_103229.1	chr11	70671503	70671703	-	1	NA	NA	NA	-2187	NM_001167669	216873	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0.025000	0.527363	
mm_15713.1	chr2	164018011	164018211	+	1	NA	NA	NA	-7113	NM_001114079	381404	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	0.010000	0.412935	
mm_78980.1	chr9	45379800	45380000	+	1	NA	NA	NA	9715	NM_022004	59095	Mm.208287	NM_022004	ENSMUSG00000066705	Fxyd6	0610030I18Rik|Php	FXYD domain-containing ion transport regulator 6	protein-coding	0.005000	0.487562	
mm_97041.1	chr11	72306468	72306668	+	1	NA	NA	NA	4939	NM_001037713	327959	Mm.291131	NM_001037713	ENSMUSG00000040483	Xaf1	Fbox39	XIAP associated factor 1	protein-coding	0.015000	0.432836	
mm_98433.1	chr11	94937493	94937693	+	1	NA	NA	NA	1369	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.055000	0.557214	
mm_68495.1	chr7	111076124	111076324	-	1	NA	NA	NA	6806	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.015000	0.383085	6(GATTATAAAAAG,-,0.00)
mm_72931.1	chr8	91313187	91313387	+	1	NA	NA	NA	-65	NM_173431	244585	Mm.324592	NM_173431	ENSMUSG00000033282	Rpgrip1l	1700047E16Rik|4931437C01|Ftm|Nphp8	Rpgrip1-like	protein-coding	0.090000	0.631841	
mm_135971.1	chr16	75016010	75016210	-	1	NA	NA	NA	569951	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.005000	0.412935	
mm_57547.1	chr6	126738128	126738328	-	1	NA	NA	NA	2446	NM_013568	16494	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	0.030000	0.537313	
mm_120793.1	chr14	74733585	74733785	+	1	NA	NA	NA	1388	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.005000	0.417910	
mm_137121.1	chr17	22674237	22674437	+	1	NA	NA	NA	73189	NM_001104575	628185	Mm.390947	NM_001104575	ENSMUSG00000094921	Vmn2r112	EG628185|V2rp1	vomeronasal 2, receptor 112	protein-coding	0.035000	0.532338	
mm_10737.1	chr2	23068973	23069173	+	1	NA	NA	NA	1	NM_001102438	74159	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.105000	0.716418	
mm_168907.1	chr12	55155317	55155517	+	1	NA	NA	NA	313	NM_001100109	665155	Mm.12848	NM_001100109	ENSMUSG00000079108	Srp54b	-	signal recognition particle 54B	protein-coding	0.075000	0.621891	
mm_19797.1	chr2	110032308	110032508	-	1	NA	NA	NA	14591	NM_026613	68201	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	0.010000	0.348259	
mm_37594.1	chr4	126533487	126533687	-	1	NA	NA	NA	-129	NM_153177	76850	Mm.86705	NM_153177	ENSMUSG00000042500	Ago4	5730550L01Rik|AI481660|Eif2c4	argonaute RISC catalytic subunit 4	protein-coding	0.170000	0.840796	
mm_129165.1	chr15	76246522	76246722	-	1	NA	NA	NA	-185	NM_023168	66168	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	0.045000	0.611940	
mm_40542.1	chr5	58004788	58004988	+	1	NA	NA	NA	286807	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.005000	0.437811	
mm_108191.1	chr12	76765456	76765656	+	1	NA	NA	NA	-17	NM_206534	211151	Mm.80970	NM_206534	ENSMUSG00000090258	Churc1	1700030P15Rik|My015|chch	churchill domain containing 1	protein-coding	0.090000	0.567164	
mm_119780.1	chr14	54181330	54181530	+	1	NA	NA	NA	72499	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.422886	
mm_32137.1	chr4	99224393	99224593	+	1	NA	NA	NA	30346	NM_001145967	242557	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.025000	0.437811	
mm_37681.1	chr4	129222284	129222484	-	1	NA	NA	NA	5527	NM_001285866	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.060000	0.666667	
mm_84927.1	chr9	81633679	81633879	-	1	NA	NA	NA	-1227	NM_010482	15551	Mm.445308	NM_010482	ENSMUSG00000049511	Htr1b	-	5-hydroxytryptamine (serotonin) receptor 1B	protein-coding	0.055000	0.567164	
mm_111894.1	chr12	108636724	108636924	-	1	NA	NA	NA	1071	NM_001163396	14026	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.010000	0.507463	
mm_160044.1	chr6	140543625	140543825	+	1	NA	NA	NA	-78938	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.010000	0.472637	
mm_130303.1	chr15	97019831	97020031	-	1	NA	NA	NA	36025	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.030000	0.467662	
mm_7088.1	chr1	88576503	88576703	-	1	NA	NA	NA	25086	NR_037971	100503197	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.015000	0.477612	
mm_87466.1	chr10	51491020	51491220	+	1	NA	NA	NA	222	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.010000	0.457711	
mm_74464.1	chr8	4217020	4217220	-	1	NA	NA	NA	192	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.060000	0.666667	
mm_84320.1	chr9	63758081	63758281	-	1	NA	NA	NA	-187	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.110000	0.746269	
mm_96536.1	chr11	68691809	68692009	+	1	NA	NA	NA	-6	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.065000	0.621891	
mm_156372.1	chrX	139651609	139651809	+	1	NA	NA	NA	-33287	NM_001081499	245638	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	0.005000	0.412935	
mm_60784.1	chr7	45566629	45566829	+	1	NA	NA	NA	-3424	NM_009737	12036	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.040000	0.601990	
mm_49107.1	chr6	8259272	8259472	+	1	NA	NA	NA	84	NM_001302353	100036521	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039|OTTMUSG00000029336	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0.095000	0.676617	
mm_82200.1	chr9	124079978	124080178	+	1	NA	NA	NA	-22105	NM_009915	12772	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.005000	0.462687	
mm_39963.1	chr5	32136876	32137076	+	1	NA	NA	NA	504	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.015000	0.393035	
mm_126428.1	chr15	80572578	80572778	+	1	NA	NA	NA	81	NM_001289442	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.055000	0.522388	
mm_139393.1	chr17	52282539	52282739	+	1	NA	NA	NA	-320070	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.010000	0.432836	
mm_135584.1	chr16	50578314	50578514	-	1	NA	NA	NA	-12089	NR_040566	75211	Mm.399337	NR_040566		4930542D17Rik	-	RIKEN cDNA 4930542D17 gene	ncRNA	0.015000	0.437811	
mm_137867.1	chr17	31319770	31319970	+	1	NA	NA	NA	23646	NM_001242427	224674	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.040000	0.517413	
mm_110533.1	chr12	55014264	55014464	-	1	NA	NA	NA	-28028	NM_013815	217578	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.020000	0.432836	
mm_33735.1	chr4	134118018	134118218	+	1	NA	NA	NA	10635	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.015000	0.542289	
mm_33052.1	chr4	123105057	123105257	+	1	NA	NA	NA	-4	NM_007559	12164	Mm.439764	NM_007559	ENSMUSG00000002384	Bmp8b	Op3	bone morphogenetic protein 8b	protein-coding	0.105000	0.676617	
mm_7767.1	chr1	131199890	131200090	-	1	NA	NA	NA	195	NM_001311094	54354	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.055000	0.616915	
mm_125937.1	chr15	76247815	76248015	+	1	NA	NA	NA	-276	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.005000	0.572139	
mm_142460.1	chr17	45596562	45596762	-	1	NA	NA	NA	-760	NM_001199114	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.020000	0.517413	
mm_148921.1	chr19	6976386	6976586	+	1	NA	NA	NA	1438	NM_008889	18938	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.015000	0.567164	
mm_3626.1	chr1	152766602	152766802	+	1	NA	NA	NA	160	NM_026369	67771	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	0.135000	0.666667	
mm_118913.1	chr14	26691566	26691766	+	1	NA	NA	NA	-21820	NM_178668	211948	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	0.005000	0.407960	
mm_94525.1	chr11	9048954	9049154	+	1	NA	NA	NA	-63	NM_177576	194974	Mm.79210	NM_177576	ENSMUSG00000040985	Sun3	Sunc1	Sad1 and UNC84 domain containing 3	protein-coding	0.050000	0.611940	
mm_44891.1	chr5	35094888	35095088	-	1	NA	NA	NA	10709	NM_013587	16976	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.035000	0.552239	
mm_107062.1	chr12	16657810	16658010	+	1	NA	NA	NA	4440	NM_008747	18217	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT2R|NTRL	neurotensin receptor 2	protein-coding	0.005000	0.477612	29(ACCCATTAAAAG,-,0.00),31(CCATTAAAAGAC,+,0.00)
mm_117741.1	chr13	95883307	95883507	-	1	NA	NA	NA	8515	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.015000	0.353234	
mm_98077.1	chr11	86484645	86484845	+	1	NA	NA	NA	88	NM_029788	76892	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0.115000	0.716418	
mm_148557.1	chr19	4721090	4721290	+	1	NA	NA	NA	9967	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	0.015000	0.562189	
mm_22654.1	chr3	14871446	14871646	+	1	NA	NA	NA	8008	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.020000	0.592040	
mm_2923.1	chr1	132116504	132116704	+	1	NA	NA	NA	23081	NM_008795	18557	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.035000	0.636816	
mm_119049.1	chr14	30631318	30631518	+	1	NA	NA	NA	-5210	NM_011103	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.010000	0.577114	
mm_146963.1	chr18	33438241	33438441	-	1	NA	NA	NA	25293	NM_001267717	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.015000	0.427861	
mm_2559.1	chr1	112950740	112950940	+	1	NA	NA	NA	-1085922	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0.005000	0.333333	
mm_139578.1	chr17	57080166	57080366	+	1	NA	NA	NA	-1756	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.015000	0.517413	
mm_80389.1	chr9	75625764	75625964	+	1	NA	NA	NA	132	NM_027309	70082	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	0.150000	0.776119	
mm_137572.1	chr17	27847876	27848076	+	1	NA	NA	NA	7889	NM_011432	20630	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	0.040000	0.572139	
mm_118077.1	chr13	103096744	103096944	-	1	NA	NA	NA	237648	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.030000	0.537313	
mm_102679.1	chr11	65261714	65261914	-	1	NA	NA	NA	8175	NM_145136	214384	Mm.32257	NM_145136	ENSMUSG00000020542	Myocd	BSAC2A|Srfcp	myocardin	protein-coding	0.015000	0.447761	
mm_107549.1	chr12	41024015	41024215	+	1	NA	NA	NA	25	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.145000	0.786070	
mm_117078.1	chr13	59557188	59557388	-	1	NA	NA	NA	59	NM_001284218	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.165000	0.761194	
mm_15195.1	chr2	154205327	154205527	+	1	NA	NA	NA	5047	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.015000	0.562189	
mm_135174.1	chr16	35938825	35939025	-	1	NA	NA	NA	102	NM_001013371	209200	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0.085000	0.641791	-35(GGGTCTTTAGGG,-,0.00)
mm_142589.1	chr17	46736062	46736262	-	1	NA	NA	NA	-6997	NM_010321	14711	Mm.29395	NM_010321	ENSMUSG00000002769	Gnmt	-	glycine N-methyltransferase	protein-coding	0.035000	0.611940	
mm_62769.1	chr7	112310502	112310702	+	1	NA	NA	NA	-57706	NM_027587	100504195	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	0.000000	0.383085	
mm_144667.1	chr18	34409267	34409467	+	1	NA	NA	NA	-56	NM_001163004	53871	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	0.085000	0.611940	
mm_153417.1	chr19	40612108	40612308	-	1	NA	NA	NA	7	NM_026260	67590	Mm.60758	NM_026260	ENSMUSG00000025008	Tctn3	4930521E07Rik|AI197391|Tect3	tectonic family member 3	protein-coding	0.065000	0.631841	
mm_124766.1	chr15	6665760	6665960	+	1	NA	NA	NA	-42521	NM_030168	78757	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.040000	0.452736	
mm_128409.1	chr15	44746486	44746686	-	1	NA	NA	NA	2086	NM_001285840	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding	0.000000	0.452736	
mm_6425.1	chr1	73930690	73930890	-	1	NA	NA	NA	-66324	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.000000	0.507463	
mm_65727.1	chr7	28380934	28381134	-	1	NA	NA	NA	-1806	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.030000	0.557214	
mm_45106.1	chr5	44799589	44799789	-	1	NA	NA	NA	57	NM_001347349	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0.030000	0.646766	
mm_99574.1	chr11	104132736	104132936	+	1	NA	NA	NA	55	NM_001313929	12921	Mm.1892	NM_007762	ENSMUSG00000018634	Crhr1	CRF1R|CRFR1|Crhr	corticotropin releasing hormone receptor 1	protein-coding	0.080000	0.726368	
mm_172959.1	chr9	88482088	88482288	-	1	NA	NA	NA	209	NM_019666	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.145000	0.726368	
mm_153656.1	chr19	44394771	44394971	-	1	NA	NA	NA	12838	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.000000	0.417910	
mm_38557.1	chr4	141642729	141642929	-	1	NA	NA	NA	-18995	NM_001013780	384071	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	0.035000	0.577114	
mm_84815.1	chr9	77535414	77535614	-	1	NA	NA	NA	8545	NM_172528	214345	Mm.28534	NM_172528	ENSMUSG00000032352	Lrrc1	A430093J20Rik|AU016091|D030059I21|mKIAA4018	leucine rich repeat containing 1	protein-coding	0.025000	0.547264	
mm_37428.1	chr4	122885974	122886174	-	1	NA	NA	NA	-17	NM_001301067	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.065000	0.621891	
mm_37722.1	chr4	129558240	129558440	-	1	NA	NA	NA	32	NM_001162432	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.025000	0.577114	
mm_57274.1	chr6	123290265	123290465	-	1	NA	NA	NA	-494	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.412935	
mm_7736.1	chr1	130851713	130851913	-	1	NA	NA	NA	-13964	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.000000	0.472637	
mm_136740.1	chr17	8340505	8340705	+	1	NA	NA	NA	-134	NM_178774	320111	Mm.442510	NM_178774	ENSMUSG00000055945	Prr18	9630019K15Rik	proline rich 18	protein-coding	0.085000	0.671642	
mm_49659.1	chr6	31126640	31126840	+	1	NA	NA	NA	-63647	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.035000	0.562189	
mm_128614.1	chr15	58823516	58823716	-	1	NA	NA	NA	-189	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.100000	0.731343	
mm_101399.1	chr11	26593579	26593779	-	1	NA	NA	NA	241	NM_027260	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.065000	0.751244	
mm_149077.1	chr19	8883819	8884019	+	1	NA	NA	NA	41	NM_001286103	102308570	Mm.27503	NM_001286103	ENSMUSG00000096740	Lbhd1	Gm21743	LBH domain containing 1	protein-coding	0.005000	0.507463	
mm_85037.1	chr9	88526692	88526892	-	1	NA	NA	NA	-3895	NR_040721	72655	Mm.21798	NR_040721	ENSMUSG00000097195	Snhg5	2810026P18Rik|4933428I09Rik|mU50HG-b	small nucleolar RNA host gene 5	ncRNA	0.015000	0.407960	
mm_95938.1	chr11	58382668	58382868	+	1	NA	NA	NA	2122	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.010000	0.472637	
mm_153899.1	chr19	47068290	47068490	-	1	NA	NA	NA	642	NM_177342	226182	Mm.301522	NM_177342	ENSMUSG00000025049	Taf5	6330528C20Rik|AV117817	TATA-box binding protein associated factor 5	protein-coding	0.090000	0.706468	
mm_98869.1	chr11	97799478	97799678	+	1	NA	NA	NA	-94	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.105000	0.736318	
mm_41134.1	chr5	87808015	87808215	+	1	NA	NA	NA	-6	NM_001301334	12992	Mm.153308	NM_009973	ENSMUSG00000061388	Csn1s2b	AW987150|Csnd|Csne	casein alpha s2-like B	protein-coding	0.010000	0.368159	-25(GGGTTTAAATAG,-,0.00),-23(GTTTAAATAGGG,+,0.00)
mm_85678.1	chr9	107815863	107816063	-	1	NA	NA	NA	-44961	NM_148930	83486	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	0.025000	0.447761	
mm_122389.1	chr14	40949649	40949849	-	1	NA	NA	NA	-1540	NM_001316748	52588	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.005000	0.407960	34(CCTTTTATAACT,+,0.00)
mm_141476.1	chr17	31129511	31129711	-	1	NA	NA	NA	0	NM_011575	21786	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.005000	0.552239	-33(GGCTATAAAAGG,-,0.00)
mm_52149.1	chr6	97991683	97991883	+	1	NA	NA	NA	0	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.035000	0.427861	
mm_40414.1	chr5	53069920	53070120	+	1	NA	NA	NA	20667	NM_011402	20531	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	0.005000	0.412935	
mm_50698.1	chr6	51598847	51599047	+	1	NA	NA	NA	54424	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.010000	0.442786	
mm_16732.1	chr2	9175957	9176157	-	1	NA	NA	NA	-13458	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.005000	0.388060	
mm_65042.1	chr7	18567232	18567432	-	1	NA	NA	NA	-27	NM_001037168	545925	Mm.440302	NM_001037168	ENSMUSG00000070797	Psg27	EG545925|cea15	pregnancy-specific glycoprotein 27	protein-coding	0.015000	0.482587	
mm_97679.1	chr11	79992992	79993192	+	1	NA	NA	NA	-14	NM_001163018	52615	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	suppressor of zeste 12 homolog (Drosophila)	protein-coding	0.100000	0.701493	
mm_116352.1	chr13	38960765	38960965	-	1	NA	NA	NA	10	NM_001170431	108652	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	0.010000	0.492537	
mm_44029.1	chr5	147430376	147430576	+	1	NA	NA	NA	-104	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.140000	0.781095	-88(GCCCCTTTAAGG,-,0.00),-86(CCCTTTAAGGAC,+,0.00)
mm_87048.1	chr10	28807480	28807680	+	1	NA	NA	NA	115927	NR_033601	114676	Mm.390292	NR_033601		4930519F09Rik	-	pyruvate dehydrogenase E1 alpha 1 pseudogene	pseudo	0.015000	0.487562	
mm_23706.1	chr3	68790615	68790815	+	1	NA	NA	NA	-78871	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.015000	0.567164	
mm_30300.1	chr3	149077086	149077286	-	1	NA	NA	NA	-122551	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.030000	0.512438	
mm_78204.1	chr9	21424841	21425041	+	1	NA	NA	NA	33	NM_001039520	13430	Mm.433257	NM_007871	ENSMUSG00000033335	Dnm2	Dyn2|Udnm|b2b2159Clo	dynamin 2	protein-coding	0.110000	0.681592	
mm_7064.1	chr1	87573820	87574020	-	1	NA	NA	NA	-50	NM_001111314	53972	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	0.000000	0.592040	
mm_147980.1	chr18	67508488	67508688	-	1	NA	NA	NA	40585	NM_176832	68166	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire homolog 1 (Drosophila)	protein-coding	0.010000	0.373134	
mm_66446.1	chr7	44865514	44865714	-	1	NA	NA	NA	4174	NM_133949	84113	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0.040000	0.606965	
mm_151862.1	chr19	5797195	5797395	-	1	NA	NA	NA	-1314	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.005000	0.378109	
mm_79124.1	chr9	46913480	46913680	+	1	NA	NA	NA	-23	NR_015605	73040	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA	0.010000	0.542289	
mm_8470.1	chr1	153332905	153333105	-	1	NA	NA	NA	-219	NM_010683	226519	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	0.100000	0.751244	
mm_166856.1	chr7	20009545	20009745	+	1	NA	NA	NA	1622	NM_194058	243874	Mm.277114	NM_194058	ENSMUSG00000060508	Nlrp9b	Nalp-delta|Nalp9b|Nlrp9	NLR family, pyrin domain containing 9B	protein-coding	0.010000	0.432836	
mm_130453.1	chr15	98564340	98564540	-	1	NA	NA	NA	-2884	NR_028442	100048895	Mm.471074	NR_028442		9330020H09Rik	ENSMUSG00000075426	RIKEN cDNA 9330020H09 gene	ncRNA	0.005000	0.333333	
mm_99232.1	chr11	101062963	101063163	+	1	NA	NA	NA	-7031	NM_013792	27419	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.020000	0.601990	
mm_23798.1	chr3	79852804	79853004	+	1	NA	NA	NA	-10242	NM_027495	70652	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.010000	0.527363	
mm_172576.1	chr8	113571445	113571645	-	1	NA	NA	NA	54263	NR_110476	78048	Mm.252797	NR_110476		4930571O06Rik	-	RIKEN cDNA 4930571O06 gene	ncRNA	0.045000	0.582090	
mm_89537.1	chr10	94550771	94550971	+	1	NA	NA	NA	-24386	NM_001168684	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.025000	0.542289	
mm_17188.1	chr2	25460975	25461175	-	1	NA	NA	NA	19	NM_153557	227622	Mm.261780	NM_153557	ENSMUSG00000047617	BC029214	D930050G13Rik|Paxx	cDNA sequence BC029214	protein-coding	0.080000	0.587065	
mm_33253.1	chr4	127168441	127168641	+	1	NA	NA	NA	-663	NM_198618	242667	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	discs, large (Drosophila) homolog-associated protein 3	protein-coding	0.055000	0.706468	
mm_134807.1	chr16	24608211	24608411	-	1	NA	NA	NA	78997	NR_038091	624582	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.015000	0.457711	
mm_95314.1	chr11	46396462	46396662	+	1	NA	NA	NA	-7047	NM_001281965	16428	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	0.020000	0.577114	
mm_114574.1	chr13	75089766	75089966	+	1	NA	NA	NA	-121	NM_013628	18548	Mm.1333	NM_013628	ENSMUSG00000021587	Pcsk1	Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	0.045000	0.537313	
mm_144956.1	chr18	37813104	37813304	+	1	NA	NA	NA	-1875	NM_033582	93707	Mm.247203	NM_033582	ENSMUSG00000023036	Pcdhgc4	-	protocadherin gamma subfamily C, 4	protein-coding	0.005000	0.472637	
mm_29449.1	chr3	113149279	113149479	-	1	NA	NA	NA	7348	NM_001190404	545562	Mm.462977	NM_001190403		Amy2b	Amy-X|Amy2-2|OTTMUSG00000022462|mAmy2-1	amylase 2b	protein-coding	0.005000	0.368159	
mm_37222.1	chr4	117926657	117926857	-	1	NA	NA	NA	3006	NM_001284191	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.105000	0.691542	
mm_81045.1	chr9	105470420	105470620	+	1	NA	NA	NA	24613	NM_175025	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.015000	0.432836	-67(TCCTATAAAGTC,+,0.00),56(AAGTCTAAAAGG,-,0.00)
mm_96245.1	chr11	62574438	62574638	+	1	NA	NA	NA	52	NM_011706	22368	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0.010000	0.462687	
mm_157931.1	chrX	80197178	80197378	-	1	NA	NA	NA	-525843	NM_028025	71967	Mm.379207	NM_028025	ENSMUSG00000046942	Mageb16	2410003J06Rik	melanoma antigen family B, 16	protein-coding	0.005000	0.393035	0(GCCTTTCTAGCC,+,0.00),79(TCCTCTTTAAGG,-,0.00)
mm_116430.1	chr13	41847512	41847712	-	1	NA	NA	NA	4	NM_001145875	109254	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.025000	0.547264	
mm_33075.1	chr4	123859576	123859776	+	1	NA	NA	NA	-45337	NM_019660	56309	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	0.005000	0.462687	
mm_10851.1	chr2	24992542	24992742	+	1	NA	NA	NA	16609	NM_146251	241274	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0.000000	0.258706	
mm_50991.1	chr6	63256017	63256217	+	1	NA	NA	NA	-740	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.120000	0.721393	-60(CCATTTCTAGGC,+,0.00)
mm_125790.1	chr15	74721518	74721718	+	1	NA	NA	NA	384	NM_198607	223626	Mm.268603	NM_198607	ENSMUSG00000056665	Them6	4930572J05Rik	thioesterase superfamily member 6	protein-coding	0.160000	0.701493	
mm_168709.1	chr11	99932352	99932552	+	1	NA	NA	NA	-3839	NM_001025244	432602	Mm.246878	NM_001025244	ENSMUSG00000051481	Krtap31-2	OTTMUSG00000002177	keratin associated protein 31-2	protein-coding	0.025000	0.477612	
mm_156737.1	chrX	159942834	159943034	+	1	NA	NA	NA	241	NM_001290664	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.000000	0.472637	-100(CCTTAAAAGGGA,+,0.00)
mm_19577.1	chr2	101644087	101644287	-	1	NA	NA	NA	5345	NM_009019	19373	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0.025000	0.517413	
mm_97586.1	chr11	78945588	78945788	+	1	NA	NA	NA	20397	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.522388	
mm_116897.1	chr13	55400715	55400915	-	1	NA	NA	NA	1167	NM_011392	20505	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	0.010000	0.562189	
mm_46013.1	chr5	90897425	90897625	-	1	NA	NA	NA	6280	NM_008176	14825	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.005000	0.378109	-34(CATTATAAAAAG,-,0.00)
mm_163455.1	chr12	96047081	96047281	-	1	NA	NA	NA	41	NR_103800	69423	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0.010000	0.497512	
mm_10420.1	chr2	13580584	13580784	+	1	NA	NA	NA	6373	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.000000	0.368159	-54(CTTTTTATAGGA,+,0.00)
mm_23065.1	chr3	36065894	36066094	+	1	NA	NA	NA	-6	NM_172678	229211	Mm.260997	NM_172678	ENSMUSG00000027710	Acad9	2600017P15Rik|4732402K02|C630012L17Rik|NPD002	acyl-Coenzyme A dehydrogenase family, member 9	protein-coding	0.080000	0.582090	
mm_86980.1	chr10	25436884	25437084	+	1	NA	NA	NA	28616	NM_013511	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.010000	0.467662	
mm_76223.1	chr8	83572624	83572824	-	1	NA	NA	NA	5966	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.005000	0.562189	
mm_38219.1	chr4	135972526	135972726	-	1	NA	NA	NA	-32	NM_011942	26394	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	0.085000	0.656716	
mm_86183.1	chr9	119322244	119322444	-	1	NA	NA	NA	83	NR_045693	108737	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	0.120000	0.716418	
mm_43543.1	chr5	137531188	137531388	+	1	NA	NA	NA	-1694	NR_105846	102465227		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0.050000	0.621891	
mm_150202.1	chr19	32762012	32762212	+	1	NA	NA	NA	4535	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.005000	0.313433	9(GTTTATAGAGTG,+,0.00)
mm_11555.1	chr2	32741343	32741543	+	1	NA	NA	NA	-427	NM_027529	70730	Mm.401360	NM_027529	ENSMUSG00000009551	6330409D20Rik	AA517851	RIKEN cDNA 6330409D20 gene	protein-coding	0.085000	0.741294	
mm_115682.1	chr13	13393495	13393695	-	1	NA	NA	NA	29	NM_031999	83924	Mm.379269	NM_031999	ENSMUSG00000021306	Gpr137b	AI788917|AU016435|AW546472|C730041E01|C80550|C80741|D13Abb1e|Tm7sf1	G protein-coupled receptor 137B	protein-coding	0.140000	0.726368	
mm_56222.1	chr6	89595553	89595753	-	1	NA	NA	NA	-1	NM_001167736	66098	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	0.085000	0.656716	
mm_138456.1	chr17	35136474	35136674	+	1	NA	NA	NA	860	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.000000	0.422886	
mm_44322.1	chr5	9725187	9725387	-	1	NA	NA	NA	65	NM_181850	108069	Mm.318966	NM_181850	ENSMUSG00000003974	Grm3	0710001G23Rik|Gprc1c|mGlu3|mGluR3	glutamate receptor, metabotropic 3	protein-coding	0.045000	0.601990	
mm_150074.1	chr19	29386734	29386934	+	1	NA	NA	NA	19396	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.000000	0.442786	
mm_38015.1	chr4	133753890	133754090	-	1	NA	NA	NA	-379	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.065000	0.751244	
mm_110130.1	chr12	26444689	26444889	-	1	NA	NA	NA	11663	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.522388	
mm_112186.1	chr12	113422440	113422640	-	1	NA	NA	NA	-67025	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.512438	
mm_13596.1	chr2	112571352	112571552	+	1	NA	NA	NA	11770	NM_001165935	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.010000	0.492537	
mm_41525.1	chr5	92571454	92571654	+	1	NA	NA	NA	17	NM_001170571	384198	Mm.76757	NM_001033478	ENSMUSG00000057068	Fam47e	C730043O17|Gm1381	family with sequence similarity 47, member E	protein-coding	0.015000	0.507463	
mm_93772.1	chr10	120370100	120370300	-	1	NA	NA	NA	-19323	NR_040626	320626	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	0.005000	0.373134	-63(CCTTATATATAA,+,0.00)
mm_138441.1	chr17	35126270	35126470	+	1	NA	NA	NA	-32	NM_033477	114585	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	0.105000	0.721393	
mm_144329.1	chr18	12974445	12974645	+	1	NA	NA	NA	2293	NM_008378	16210	Mm.8154	NM_008378	ENSMUSG00000024423	Impact	E430016J11Rik	impact, RWD domain protein	protein-coding	0.045000	0.497512	
mm_52869.1	chr6	122339888	122340088	+	1	NA	NA	NA	239	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.115000	0.711443	
mm_140073.1	chr17	75162830	75163030	+	1	NA	NA	NA	-15851	NM_001331236	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.020000	0.393035	
mm_73153.1	chr8	94994607	94994807	+	1	NA	NA	NA	10308	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.005000	0.567164	
mm_131661.1	chr16	20611510	20611710	+	1	NA	NA	NA	9	NM_025462	107522	Mm.263319	NM_025462	ENSMUSG00000022842	Ece2	1810009K13Rik|6330509A19Rik|9630025D12Rik|BB127715|Ece-2	endothelin converting enzyme 2	protein-coding	0.065000	0.636816	
mm_25732.1	chr3	122834663	122834863	+	1	NA	NA	NA	-32783	NR_045168	71647	Mm.449992	NR_045168	ENSMUSG00000106583	4930447N08Rik	-	RIKEN cDNA 4930447N08 gene	ncRNA	0.005000	0.477612	
mm_17486.1	chr2	28582887	28583087	-	1	NA	NA	NA	292	NM_148928	70239	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0.115000	0.656716	
mm_80238.1	chr9	72693494	72693694	+	1	NA	NA	NA	31247	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.040000	0.572139	
mm_4302.1	chr1	171839623	171839823	+	1	NA	NA	NA	26	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.015000	0.497512	
mm_163604.1	chr13	48968144	48968344	-	1	NA	NA	NA	132	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.155000	0.820896	33(CCCCCTAAAGGG,-,0.00),35(CCCTAAAGGGCC,+,0.00)
mm_103595.1	chr11	78301407	78301607	-	1	NA	NA	NA	-84	NM_017407	54141	Mm.24250	NM_017407	ENSMUSG00000002055	Spag5	AI874642|D11Bhm180e|Deepest|MAP126|Mastrin|S17	sperm associated antigen 5	protein-coding	0.090000	0.646766	
mm_114616.1	chr13	75849279	75849479	+	1	NA	NA	NA	9493	NM_053108	93692	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.015000	0.467662	
mm_119405.1	chr14	44988071	44988271	+	1	NA	NA	NA	60	NM_008964	19217	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.010000	0.437811	
mm_3267.1	chr1	136415173	136415373	+	1	NA	NA	NA	2	NM_026500	67997	Mm.385462	NM_026500	ENSMUSG00000026404	Ddx59	1210002B07Rik|4833411G06Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	protein-coding	0.095000	0.681592	
mm_162582.1	chr1	178337710	178337910	-	1	NA	NA	NA	-26	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.175000	0.761194	
mm_14390.1	chr2	129800583	129800783	+	1	NA	NA	NA	166	NM_001038635	67333	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	0.105000	0.661692	
mm_76753.1	chr8	95434793	95434993	-	1	NA	NA	NA	-24	NM_008187	14894	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.115000	0.726368	
mm_122966.1	chr14	54973750	54973950	-	1	NA	NA	NA	1926	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.045000	0.601990	
mm_33172.1	chr4	126035095	126035295	+	1	NA	NA	NA	10536	NM_001252651	12986	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.000000	0.442786	
mm_48102.1	chr5	137067788	137067988	-	1	NA	NA	NA	4384	NM_008871	18787	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.015000	0.532338	
mm_126049.1	chr15	76948170	76948370	+	1	NA	NA	NA	9	NM_001347540	117171	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0.075000	0.621891	
mm_147961.1	chr18	67066379	67066579	-	1	NA	NA	NA	-21819	NM_177137	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.015000	0.532338	-7(GCTCTTATACTC,+,0.00)
mm_74453.1	chr8	4214196	4214396	-	1	NA	NA	NA	3016	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.030000	0.562189	
mm_3505.1	chr1	150106978	150107178	+	1	NA	NA	NA	7047	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.025000	0.378109	
mm_50123.1	chr6	41535461	41535661	+	1	NA	NA	NA	13785	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.025000	0.552239	
mm_50156.1	chr6	41546474	41546674	+	1	NA	NA	NA	24798	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.378109	
mm_151315.1	chr19	55845860	55846060	+	1	NA	NA	NA	-49361	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.010000	0.522388	
mm_48922.1	chr6	4047594	4047794	+	1	NA	NA	NA	-110	NR_131108	78034	Mm.243851	NR_131108	ENSMUSG00000107681	4930528H21Rik	-	RIKEN cDNA 4930528H21 gene	ncRNA	0.005000	0.353234	
mm_42825.1	chr5	122100696	122100896	+	1	NA	NA	NA	-184	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.025000	0.592040	
mm_149210.1	chr19	9982750	9982950	+	1	NA	NA	NA	204	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.130000	0.691542	
mm_133355.1	chr16	84640072	84640272	+	1	NA	NA	NA	-39617	NR_040537	78023	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0.015000	0.402985	87(CTCTTTAAAGGC,+,0.00),87(CTCTTTAAAGGC,-,0.00),88(TCTTTAAAGGCC,+,0.00)
mm_48237.1	chr5	137740954	137741154	-	1	NA	NA	NA	114	NM_001347505	243300	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	0.065000	0.696517	
mm_50966.1	chr6	59710626	59710826	+	1	NA	NA	NA	-284436	NM_183183	243385	Mm.138080	NM_183183	ENSMUSG00000045441	Gprin3	C030038J10Rik|C730021L23	GPRIN family member 3	protein-coding	0.000000	0.348259	-38(AAATTTAAAAGG,-,0.00)
mm_150761.1	chr19	44236907	44237107	+	1	NA	NA	NA	33719	NM_024450	30049	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	0.010000	0.437811	
mm_68459.1	chr7	110164772	110164972	-	1	NA	NA	NA	42813	NM_009516	22390	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.065000	0.582090	
mm_17953.1	chr2	37350981	37351181	-	1	NA	NA	NA	8251	NM_026176	67466	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	0.005000	0.417910	
mm_48229.1	chr5	137684496	137684696	-	1	NA	NA	NA	157	NM_001303271	231801	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	0.095000	0.691542	
mm_59976.1	chr7	30459629	30459829	+	1	NA	NA	NA	-329	NM_019459	54631	Mm.437830	NM_019459	ENSMUSG00000006649	Nphs1	NephrinB|nephrin	nephrosis 1, nephrin	protein-coding	0.015000	0.567164	
mm_61426.1	chr7	73640648	73640848	+	1	NA	NA	NA	45815	NR_033604	244061	Mm.484605	NR_033604	ENSMUSG00000108337	Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo	0.010000	0.472637	
mm_97500.1	chr11	78394384	78394584	+	1	NA	NA	NA	-1	NR_003282	790911	Mm.457257	NR_003282	ENSMUSG00000085747	Slc13a2os	Gm11194|OTTMUSG00000000132	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand	ncRNA	0.010000	0.587065	
mm_60762.1	chr7	45529516	45529716	+	1	NA	NA	NA	3286	NM_148927	69217	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0.020000	0.572139	
mm_85435.1	chr9	104002256	104002456	-	1	NA	NA	NA	-188	NM_172460	74025	Mm.479273	NM_028721	ENSMUSG00000032558	Nphp3	3632410F03Rik|AI550417|C230078J01|D330020E01Rik|pcy	nephronophthisis 3 (adolescent)	protein-coding	0.050000	0.582090	
mm_47655.1	chr5	125392867	125393067	-	1	NA	NA	NA	-2950	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.005000	0.497512	
mm_33956.1	chr4	137454681	137454881	+	1	NA	NA	NA	1485	NM_027063	69380	Mm.272519	NM_027063	ENSMUSG00000041399	1700013G24Rik	AI507018	RIKEN cDNA 1700013G24 gene	protein-coding	0.035000	0.587065	
mm_8488.1	chr1	153723325	153723525	-	1	NA	NA	NA	14404	NR_046171	329271	Mm.384841	NR_046171	ENSMUSG00000100334	C230024C17Rik	C230024C17	RIKEN cDNA C230024C17 gene	ncRNA	0.020000	0.547264	
mm_22486.1	chr3	5515362	5515562	+	1	NA	NA	NA	60786	NM_001163301	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.005000	0.552239	
mm_144435.1	chr18	21091076	21091276	+	1	NA	NA	NA	18832	NM_008586	17288	Mm.2682	NM_008586	ENSMUSG00000024313	Mep1b	Mep-1b	meprin 1 beta	protein-coding	0.015000	0.482587	
mm_156245.1	chrX	136270181	136270381	+	1	NA	NA	NA	28	NM_001110234	12070	Mm.90787	NM_009750	ENSMUSG00000046432	Bex3	AL033356|DXWsu67e|Gcap27|Nade|Ngfrap1	brain expressed X-linked 3	protein-coding	0.110000	0.751244	
mm_104430.1	chr11	94951209	94951409	-	1	NA	NA	NA	15085	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.035000	0.587065	
mm_54453.1	chr6	34746288	34746488	-	1	NA	NA	NA	-34044	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.030000	0.611940	
mm_89354.1	chr10	88201037	88201237	+	1	NA	NA	NA	40	NM_027487	67282	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	0.055000	0.611940	
mm_50183.1	chr6	41605561	41605761	+	1	NA	NA	NA	179	NM_007680	13848	Mm.271976	NM_007680	ENSMUSG00000029869	Ephb6	Cekl|Mep	Eph receptor B6	protein-coding	0.080000	0.661692	
mm_172921.1	chr9	67253006	67253206	-	1	NA	NA	NA	-16380	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	0.015000	0.552239	
mm_148116.1	chr18	74961160	74961360	-	1	NA	NA	NA	3	NM_010720	16891	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	0.085000	0.572139	
mm_5375.1	chr1	30875817	30876017	-	1	NA	NA	NA	-12661	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding	0.000000	0.472637	
mm_120210.1	chr14	62413462	62413662	+	1	NA	NA	NA	42727	NM_001204340	239134	Mm.236557	NM_172810	ENSMUSG00000021933	Gucy1b2	B930025B03|GC-SB2	guanylate cyclase 1, soluble, beta 2	protein-coding	0.005000	0.477612	
mm_63189.1	chr7	125594041	125594241	+	1	NA	NA	NA	-9288	NM_021887	60504	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.015000	0.587065	
mm_33973.1	chr4	137626600	137626800	+	1	NA	NA	NA	32511	NM_130879	170707	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	0.010000	0.358209	
mm_5736.1	chr1	45339294	45339494	-	1	NA	NA	NA	27856	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.005000	0.417910	
mm_38851.1	chr4	149313914	149314114	-	1	NA	NA	NA	-6281	NM_001290995	16561	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0.030000	0.527363	
mm_137097.1	chr17	21536989	21537189	+	1	NA	NA	NA	-1211	NR_131123	319870	Mm.488274	NR_131123	ENSMUSG00000097781	9330136K24Rik	-	RIKEN cDNA 9330136K24 gene	ncRNA	0.000000	0.417910	-33(CCTTTTATAAGC,+,0.00),-33(CCTTTTATAAGC,-,0.00)
mm_51385.1	chr6	77242571	77242771	+	1	NA	NA	NA	-46	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.085000	0.631841	
mm_7605.1	chr1	126470754	126470954	-	1	NA	NA	NA	22073	NM_172484	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.000000	0.462687	
mm_128716.1	chr15	63997986	63998186	-	1	NA	NA	NA	62362	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.135000	0.761194	
mm_88507.1	chr10	77893322	77893522	+	1	NA	NA	NA	2	NR_015547	75188	Mm.348012	NM_029200	ENSMUSG00000096573	1700009J07Rik	4930535B06Rik	RIKEN cDNA 1700009J07 gene	ncRNA	0.005000	0.527363	
mm_4745.1	chr1	182124710	182124910	+	1	NA	NA	NA	73	NM_012058	27058	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	0.140000	0.726368	
mm_103258.1	chr11	71018410	71018610	-	1	NA	NA	NA	793	NM_001291147	116891	Mm.28131	NM_033562	ENSMUSG00000018442	Derl2	CGI-101|Derlin-2|F-lana|Flana	Der1-like domain family, member 2	protein-coding	0.020000	0.388060	
mm_100017.1	chr11	114890121	114890321	+	1	NA	NA	NA	180	NM_170758	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.050000	0.562189	
mm_167359.1	chr8	84665018	84665218	+	1	NA	NA	NA	-2266	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.060000	0.592040	
mm_93839.1	chr10	121626073	121626273	-	1	NA	NA	NA	143	NM_001081056	73192	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	0.125000	0.711443	
mm_46719.1	chr5	110653033	110653233	-	1	NA	NA	NA	249	NM_153570	100608	Mm.29960	NM_153570	ENSMUSG00000033294	Noc4l	AI326906	NOC4 like	protein-coding	0.105000	0.686567	
mm_24578.1	chr3	93444611	93444811	+	1	NA	NA	NA	2381	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.065000	0.631841	
mm_63351.1	chr7	126976349	126976549	+	1	NA	NA	NA	535	NM_001347656	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.055000	0.532338	-69(CGGCCTTAAAGG,-,0.00),-68(GGCCTTAAAGGG,-,0.00),-66(CCTTAAAGGGAC,+,0.00)
mm_113434.1	chr13	34875441	34875641	+	1	NA	NA	NA	47	NM_013830	19134	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	0.140000	0.681592	
mm_68265.1	chr7	105595434	105595634	-	1	NA	NA	NA	4582	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.030000	0.552239	
mm_84618.1	chr9	70503254	70503454	-	1	NA	NA	NA	371	NM_033604	93836	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	0.150000	0.791045	
mm_9711.1	chr1	179546169	179546369	-	1	NA	NA	NA	7	NM_001331055	15278	Mm.293529	NM_008249	ENSMUSG00000026492	Tfb2m	Hkp1	transcription factor B2, mitochondrial	protein-coding	0.080000	0.606965	
mm_135626.1	chr16	52287594	52287794	-	1	NA	NA	NA	165387	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.363184	11(CCTTTTATGCAA,+,0.00)
mm_3551.1	chr1	150414421	150414621	+	1	NA	NA	NA	-21466	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.015000	0.407960	
mm_161562.1	chr16	17915000	17915200	-	1	NA	NA	NA	-41	NM_029469	195333	Mm.463003	NM_029469	ENSMUSG00000022738	Gsc2	4930568H22Rik|GSC-2|Gscl	goosecoid homebox 2	protein-coding	0.100000	0.671642	
mm_50709.1	chr6	52166421	52166621	+	1	NA	NA	NA	847	NR_131182	105242657	Mm.490651	NR_131182	ENSMUSG00000056445	Hoxaas2	2810043O09Rik|5730446D14Rik	Hoxa cluster antisense RNA 2	ncRNA	0.005000	0.462687	
mm_96275.1	chr11	62847022	62847222	+	1	NA	NA	NA	-1	NM_001033669	213980	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	0.020000	0.467662	
mm_164660.1	chr17	39406251	39406451	+	1	NA	NA	NA	-8	NM_001244763	100126774	Mm.350534	NM_001244763	ENSMUSG00000094024	Esp18	Gm20579	exocrine gland secreted peptide 18	protein-coding	0.010000	0.398010	
mm_49714.1	chr6	34422983	34423183	+	1	NA	NA	NA	10721	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.015000	0.388060	
mm_113609.1	chr13	41250070	41250270	+	1	NA	NA	NA	326	NM_001135577	108934	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.125000	0.786070	
mm_10895.1	chr2	25264209	25264409	+	1	NA	NA	NA	1711	NM_175286	97031	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0.005000	0.567164	
mm_154608.1	chrX	7648624	7648824	+	1	NA	NA	NA	-8655	NM_001290624	54630	Mm.232232	NM_175097	ENSMUSG00000031145	Prickle3	Lmo6|Sfc16	prickle planar cell polarity protein 3	protein-coding	0.085000	0.696517	-67(CCCCAGAAAAGC,-,0.00)
mm_101080.1	chr11	11699433	11699633	-	1	NA	NA	NA	9356	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.015000	0.547264	
mm_61252.1	chr7	65803974	65804174	+	1	NA	NA	NA	22	NR_045301	100503969	Mm.383527	NR_045301		1810008I18Rik	-	RIKEN cDNA 1810008I18 gene	ncRNA	0.010000	0.592040	
mm_109292.1	chr12	109559411	109559611	+	1	NA	NA	NA	-4181	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.015000	0.417910	
mm_118851.1	chr14	25694057	25694257	+	1	NA	NA	NA	-13	NM_134084	105675	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.145000	0.701493	
mm_32184.1	chr4	101068881	101069081	+	1	NA	NA	NA	-57	NM_183024	242570	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.160000	0.781095	
mm_120225.1	chr14	62857330	62857530	+	1	NA	NA	NA	-8112	NR_105860	102465311		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.000000	0.373134	
mm_101240.1	chr11	20700749	20700949	-	1	NA	NA	NA	40707	NM_001290545	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.000000	0.293532	
mm_166206.1	chr5	44073693	44073893	-	1	NA	NA	NA	20975	NM_001163581	19126	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.010000	0.467662	
mm_104223.1	chr11	88540361	88540561	-	1	NA	NA	NA	-78790	NR_131025	68397	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	0.005000	0.502488	
mm_59956.1	chr7	30427062	30427262	+	1	NA	NA	NA	3858	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.020000	0.537313	
mm_14439.1	chr2	130840123	130840323	+	1	NA	NA	NA	-78	NM_029432	228602	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	0.145000	0.786070	
mm_5567.1	chr1	38897948	38898148	-	1	NA	NA	NA	112	NM_145142	98388	Mm.260054	NM_145142	ENSMUSG00000026080	Chst10	AI507003|AU041319|Hnk-1st|ST	carbohydrate sulfotransferase 10	protein-coding	0.115000	0.766169	
mm_53680.1	chr6	142303482	142303682	+	1	NA	NA	NA	5157	NM_010491	15874	Mm.415	NM_010491	ENSMUSG00000041681	Iapp	DAP	islet amyloid polypeptide	protein-coding	0.005000	0.368159	
mm_132110.1	chr16	31455027	31455227	+	1	NA	NA	NA	26374	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.025000	0.552239	
mm_38949.1	chr4	150566770	150566970	-	1	NA	NA	NA	85304	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.010000	0.432836	
mm_100700.1	chr11	3539148	3539348	-	1	NA	NA	NA	44	NM_013870	29856	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.070000	0.661692	
mm_120634.1	chr14	70466757	70466957	+	1	NA	NA	NA	9340	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.055000	0.641791	
mm_106760.1	chr12	4234039	4234239	+	1	NA	NA	NA	112	NM_001204912	69709	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.055000	0.567164	
mm_41529.1	chr5	92683223	92683423	+	1	NA	NA	NA	-112	NM_015756	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.030000	0.412935	
mm_79166.1	chr9	47850203	47850403	+	1	NA	NA	NA	-32095	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.020000	0.467662	
mm_72620.1	chr8	84638465	84638665	+	1	NA	NA	NA	24287	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.010000	0.567164	
mm_158210.1	chrX	105874978	105875178	-	1	NA	NA	NA	54294	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.010000	0.412935	
mm_118593.1	chr14	20674241	20674441	+	1	NA	NA	NA	20	NM_001168273	218811	Mm.173119	NM_172596	ENSMUSG00000039367	Sec24c	2610204K03Rik|mKIAA0079	Sec24 related gene family, member C (S. cerevisiae)	protein-coding	0.075000	0.661692	
mm_98485.1	chr11	94951101	94951301	+	1	NA	NA	NA	14977	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.065000	0.597015	
mm_75218.1	chr8	39605656	39605856	-	1	NA	NA	NA	36922	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.482587	
mm_153059.1	chr19	32182050	32182250	-	1	NA	NA	NA	28863	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.020000	0.437811	
mm_137355.1	chr17	25274280	25274480	+	1	NA	NA	NA	-70	NM_011665	22196	Mm.240044	NM_011665	ENSMUSG00000015120	Ube2i	5830467E05Rik|F830028O17Rik|UBC9|Ubce2i|Ubce9	ubiquitin-conjugating enzyme E2I	protein-coding	0.050000	0.587065	
mm_50738.1	chr6	52720222	52720422	+	1	NA	NA	NA	6593	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.000000	0.268657	66(GTTTTAAGAGAC,+,0.00)
mm_136658.1	chr17	6005445	6005645	+	1	NA	NA	NA	-2035	NM_001290698	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.035000	0.636816	
mm_9990.1	chr1	191363018	191363218	-	1	NA	NA	NA	33923	NM_144880	226849	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0.005000	0.368159	
mm_24654.1	chr3	94413170	94413370	+	1	NA	NA	NA	-48	NM_028307	72634	Mm.331198	NM_028307	ENSMUSG00000041912	Tdrkh	2700091C21Rik|Tdrd2	tudor and KH domain containing protein	protein-coding	0.120000	0.671642	
mm_163022.1	chr11	47282794	47282994	+	1	NA	NA	NA	96408	NM_011891	24052	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.010000	0.412935	
mm_140582.1	chr17	10212064	10212264	-	1	NA	NA	NA	107197	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.005000	0.348259	
mm_98758.1	chr11	96545594	96545794	+	1	NA	NA	NA	81103	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.000000	0.437811	
mm_36587.1	chr4	88418907	88419107	-	1	NA	NA	NA	19919	NM_025760	66775	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.000000	0.407960	31(GGCCATATAGAG,-,0.00),33(CCATATAGAGAG,+,0.00)
mm_172789.1	chr9	106512296	106512496	+	1	NA	NA	NA	-2177	NM_029300	75470	Mm.63799	NM_029300	ENSMUSG00000066382	Iqcf5	1700007L12Rik	IQ motif containing F5	protein-coding	0.005000	0.532338	
mm_2801.1	chr1	130851598	130851798	+	1	NA	NA	NA	-14079	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.000000	0.452736	
mm_109670.1	chr12	113052304	113052504	+	1	NA	NA	NA	-22098	NM_029381	75671	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0.005000	0.552239	
mm_126002.1	chr15	76520832	76521032	+	1	NA	NA	NA	1197	NM_130893	170729	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.010000	0.567164	
mm_3809.1	chr1	158362404	158362604	+	1	NA	NA	NA	200	NM_001205204	11899	Mm.329586	NM_007495	ENSMUSG00000026587	Astn1	Astn|GC14|mKIAA0289	astrotactin 1	protein-coding	0.050000	0.681592	
mm_61161.1	chr7	59228656	59228856	+	1	NA	NA	NA	4	NM_011668	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|mKIAA4216	ubiquitin protein ligase E3A	protein-coding	0.120000	0.681592	
mm_94697.1	chr11	20112977	20113177	+	1	NA	NA	NA	-126	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.100000	0.696517	
mm_11361.1	chr2	30929928	30930128	+	1	NA	NA	NA	-22973	NM_133673	30934	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.030000	0.606965	
mm_40740.1	chr5	66676144	66676344	+	1	NA	NA	NA	123	NM_011670	22223	Mm.29807	NM_011670	ENSMUSG00000029223	Uchl1	AW822034|C88048|PGP 9.5|PGP9.5|R75593|UCH-L1|UCHL-1|gad	ubiquitin carboxy-terminal hydrolase L1	protein-coding	0.065000	0.601990	
mm_94637.1	chr11	16901733	16901933	+	1	NA	NA	NA	49449	NR_110421	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.010000	0.417910	68(TCTTAAATAGCC,+,0.00)
mm_78183.1	chr9	21225276	21225476	+	1	NA	NA	NA	905	NR_106127	102465769		NR_106127	ENSMUSG00000098764	Mir7667	Gm27756|mmu-mir-7667	microRNA 7667	ncRNA	0.045000	0.522388	
mm_71375.1	chr8	45803602	45803802	+	1	NA	NA	NA	15595	NR_045739	319940	Mm.441720	NR_045739	ENSMUSG00000085440	Sorbs2os	D330022K07Rik	sorbin and SH3 domain containing 2, opposite strand	ncRNA	0.015000	0.477612	
mm_68253.1	chr7	105581136	105581336	-	1	NA	NA	NA	255	NM_001253885	11785	Mm.38469	NM_009685	ENSMUSG00000037032	Apbb1	Fe65|Rir	amyloid beta (A4) precursor protein-binding, family B, member 1	protein-coding	0.140000	0.766169	
mm_57240.1	chr6	123282966	123283166	-	1	NA	NA	NA	6805	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.010000	0.432836	
mm_172100.1	chr6	31088099	31088299	-	1	NA	NA	NA	-25106	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.010000	0.492537	-52(GGATTTAAAAGA,-,0.00)
mm_73.1	chr1	6673278	6673478	+	1	NA	NA	NA	-56673	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.373134	-84(GCATTAATAGTC,+,0.00),-38(GCTTTAATGGAG,+,0.00)
mm_105155.1	chr11	101466087	101466287	-	1	NA	NA	NA	12	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.095000	0.696517	-99(CCCTTTAAGTCC,+,0.00)
mm_16133.1	chr2	170349212	170349412	+	1	NA	NA	NA	-7049	NR_040610	73303	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.050000	0.552239	
mm_156278.1	chrX	136836869	136837069	+	1	NA	NA	NA	14223	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.427861	
mm_156225.1	chrX	135796039	135796239	+	1	NA	NA	NA	-42895	NM_001163016	245607	Mm.489763	NM_001163015	ENSMUSG00000072966	Gprasp2	5330440H13Rik|GASP-2|GASP2|Prpl5	G protein-coupled receptor associated sorting protein 2	protein-coding	0.085000	0.671642	
mm_157900.1	chrX	77847911	77848111	-	1	NA	NA	NA	5489	NM_017471	54192	Mm.8034	NM_017471	ENSMUSG00000000003	Pbsn	PB|Prbs	probasin	protein-coding	0.010000	0.393035	
mm_99660.1	chr11	105784719	105784919	+	1	NA	NA	NA	159328	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.005000	0.348259	
mm_80526.1	chr9	80126274	80126474	+	1	NA	NA	NA	-38660	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.005000	0.333333	
mm_142188.1	chr17	36889942	36890142	-	1	NA	NA	NA	83	NM_001033235	195359	Mm.32606	NM_001033235	ENSMUSG00000073399	Trim40	Gm319|Gm35|Gm865	tripartite motif-containing 40	protein-coding	0.005000	0.437811	69(GGGTATTAAGAG,-,0.00)
mm_119698.1	chr14	53665829	53666029	+	1	NA	NA	NA	588000	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.532338	
mm_137726.1	chr17	29268841	29269041	+	1	NA	NA	NA	153	NM_030561	80748	Mm.290116	NM_030561	ENSMUSG00000052712	BC004004	2400006G15Rik	cDNA sequence BC004004	protein-coding	0.105000	0.731343	
mm_53611.1	chr6	139662590	139662790	+	1	NA	NA	NA	-53169	NM_207683	18705	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide	protein-coding	0.005000	0.462687	
mm_72086.1	chr8	71579213	71579413	+	1	NA	NA	NA	10386	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.005000	0.522388	-3(AGCCATTAAAGG,-,0.00),-1(CCATTAAAGGAC,+,0.00)
mm_160194.1	chr7	63444687	63444887	+	1	NA	NA	NA	15	NM_130880	170711	Mm.156872	NM_130880	ENSMUSG00000033510	Otud7a	AJ430384|Otud7	OTU domain containing 7A	protein-coding	0.155000	0.786070	
mm_169985.1	chr17	15022685	15022885	+	1	NA	NA	NA	-12601	NM_001123367	100041639	Mm.440445	NM_001123367	ENSMUSG00000079710	Gm3448	-	predicted gene 3448	protein-coding	0.035000	0.577114	-52(CCATTTAAACAC,+,0.00)
mm_53934.1	chr6	4747077	4747277	-	1	NA	NA	NA	27	NM_001130188	20392	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	0.060000	0.656716	
mm_40243.1	chr5	38039108	38039308	+	1	NA	NA	NA	-22	NM_001289536	71116	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0.090000	0.601990	
mm_72212.1	chr8	72646522	72646722	+	1	NA	NA	NA	-89	NM_176940	319555	Mm.212927	NM_176940	ENSMUSG00000048148	Nwd1	A230063L24Rik	NACHT and WD repeat domain containing 1	protein-coding	0.020000	0.542289	
mm_64584.1	chr7	145300800	145301000	+	1	NA	NA	NA	-9	NM_145379	211577	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	0.040000	0.597015	
mm_86375.1	chr9	123835886	123836086	-	1	NA	NA	NA	15675	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.005000	0.427861	17(GACCTTTAAAGA,-,0.00),18(ACCTTTAAAGAG,-,0.00),19(CCTTTAAAGAGG,+,0.00)
mm_100468.1	chr11	119928508	119928708	+	1	NA	NA	NA	-14484	NM_001037754	108100	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0.030000	0.497512	
mm_43735.1	chr5	139793900	139794100	+	1	NA	NA	NA	2464	NM_010757	17135	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0.015000	0.502488	
mm_162462.1	chr1	128767092	128767292	+	1	NA	NA	NA	-174893	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.010000	0.452736	
mm_15862.1	chr2	164832770	164832970	+	1	NA	NA	NA	-2	NM_001038492	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.070000	0.631841	
mm_66354.1	chr7	43527607	43527807	-	1	NA	NA	NA	5464	NM_001111058	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.010000	0.378109	
mm_113172.1	chr13	24813462	24813662	+	1	NA	NA	NA	11905	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.010000	0.348259	
mm_48498.1	chr5	142802886	142803086	-	1	NA	NA	NA	14401	NM_178242	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.015000	0.497512	
mm_60606.1	chr7	44572501	44572701	+	1	NA	NA	NA	156	NM_008437	16541	Mm.383181	NM_008437	ENSMUSG00000002204	Napsa	KAP|Kdap|NAP1|SNAPA|pronapsin	napsin A aspartic peptidase	protein-coding	0.020000	0.582090	
mm_151526.1	chr19	58743951	58744151	+	1	NA	NA	NA	15164	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.005000	0.447761	
mm_17574.1	chr2	30413185	30413385	-	1	NA	NA	NA	2463	NM_007760	12908	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.005000	0.547264	-44(TGGCATATAAGG,-,0.00),-42(GCATATAAGGCC,+,0.00)
mm_146162.1	chr18	75056777	75056977	+	1	NA	NA	NA	38105	NM_027727	69190	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	0.015000	0.562189	
mm_131595.1	chr16	18876624	18876824	+	1	NA	NA	NA	-26	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.105000	0.656716	
mm_83575.1	chr9	47708355	47708555	-	1	NA	NA	NA	109753	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.020000	0.547264	
mm_94321.1	chr11	4237694	4237894	+	1	NA	NA	NA	1009	NM_001013365	18413	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.040000	0.636816	
mm_138279.1	chr17	34608880	34609080	+	1	NA	NA	NA	-34	NM_018862	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.020000	0.547264	
mm_107001.1	chr12	11280255	11280455	+	1	NA	NA	NA	14469	NM_025695	67241	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	0.005000	0.328358	-28(GTTTTTATAACC,+,0.00)
mm_125079.1	chr15	26308696	26308896	+	1	NA	NA	NA	-252	NM_177597	211147	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0.085000	0.656716	
mm_80227.1	chr9	72662398	72662598	+	1	NA	NA	NA	151	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.110000	0.701493	
mm_78965.1	chr9	45274800	45275000	+	1	NA	NA	NA	-5751	NM_001324486	16154	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0.000000	0.427861	33(CCTTTTAAAATG,+,0.00)
mm_164015.1	chr14	70994350	70994550	-	1	NA	NA	NA	104343	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.030000	0.512438	
mm_84804.1	chr9	77261343	77261543	-	1	NA	NA	NA	86427	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.010000	0.482587	
mm_109746.1	chr12	117624982	117625182	+	1	NA	NA	NA	108603	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.000000	0.363184	
mm_112456.1	chr13	5864659	5864859	+	1	NA	NA	NA	3270	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.020000	0.452736	
mm_34815.1	chr4	154937092	154937292	+	1	NA	NA	NA	-9115	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.010000	0.422886	-1(GCATTTAGACTC,+,0.00)
mm_76797.1	chr8	102865772	102865972	-	1	NA	NA	NA	-80761	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.050000	0.527363	33(GTCTTTAAACCC,+,0.00)
mm_102155.1	chr11	53707201	53707401	-	1	NA	NA	NA	18	NM_009012	19360	Mm.4888	NM_009012	ENSMUSG00000020380	Rad50	Mrell|Rad50l	RAD50 double strand break repair protein	protein-coding	0.115000	0.696517	33(GCTTTTCTGGGC,+,0.00)
mm_123813.1	chr14	70523295	70523495	-	1	NA	NA	NA	686	NM_011359	20389	Mm.24040	NM_011359	ENSMUSG00000022097	Sftpc	Bricd6|SP-C|SP5|SPC|Sftp-2|Sftp2|pro-SpC	surfactant associated protein C	protein-coding	0.010000	0.417910	
mm_53286.1	chr6	128960499	128960699	+	1	NA	NA	NA	-10561	NM_001168224	70809	Mm.439891	NM_027562	ENSMUSG00000000248	Clec2g	4632413B12Rik|Clr-c|Clr-d|Clrc|Clrd|Clrx|Ddv10|Ocilrp1	C-type lectin domain family 2, member g	protein-coding	0.005000	0.333333	
mm_112940.1	chr13	20986242	20986442	+	1	NA	NA	NA	86957	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.005000	0.417910	-37(GCTTTTCAGGGC,+,0.00)
mm_6920.1	chr1	84840166	84840366	-	1	NA	NA	NA	425	NM_025386	66153	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.085000	0.661692	
mm_64432.1	chr7	142577870	142578070	+	1	NA	NA	NA	176	NR_130974	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.040000	0.577114	
mm_43177.1	chr5	127657398	127657598	+	1	NA	NA	NA	25236	NM_177005	319804	Mm.237888	NM_177005	ENSMUSG00000049971	Glt1d1	5730455A04Rik	glycosyltransferase 1 domain containing 1	protein-coding	0.010000	0.407960	
mm_107010.1	chr12	11802033	11802233	+	1	NA	NA	NA	80766	NR_003964	627110	Mm.194735	NR_003964		Tubb2a-ps2	C79445	tubulin, beta 2a, pseudogene 2	pseudo	0.000000	0.388060	
mm_41157.1	chr5	87929776	87929976	+	1	NA	NA	NA	4243	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.010000	0.472637	
mm_70444.1	chr8	11727983	11728183	+	1	NA	NA	NA	-22	NM_001113517	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.190000	0.840796	
mm_101327.1	chr11	22972754	22972954	-	1	NA	NA	NA	849	NM_011663	22183	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.090000	0.577114	
mm_172524.1	chr7	83755889	83756089	+	1	NA	NA	NA	-20499	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.020000	0.427861	7(AGCCTTTAAAAG,-,0.00),8(GCCTTTAAAAGA,-,0.00),9(CCTTTAAAAGAT,+,0.00)
mm_53619.1	chr6	140424012	140424212	+	1	NA	NA	NA	13	NM_144920	109135	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.170000	0.791045	
mm_132162.1	chr16	32247152	32247352	+	1	NA	NA	NA	-1	NM_026898	68980	Mm.159860	NM_026898	ENSMUSG00000022787	Wdr53	1500002B03Rik|AI848860	WD repeat domain 53	protein-coding	0.075000	0.587065	76(CCTCTAATGGCC,+,0.00)
mm_79263.1	chr9	50753066	50753266	+	1	NA	NA	NA	195	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.020000	0.507463	35(GCATATATAAGG,-,0.00)
mm_89978.1	chr10	111595813	111596013	+	1	NA	NA	NA	-1640	NR_045344	71321	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.015000	0.517413	
mm_142634.1	chr17	47414615	47414815	-	1	NA	NA	NA	-4	NM_001172091	75462	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.010000	0.487562	30(CTCTCTAAATGC,-,0.00)
mm_110282.1	chr12	32061211	32061411	-	1	NA	NA	NA	-32	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.135000	0.776119	
mm_138044.1	chr17	33925323	33925523	+	1	NA	NA	NA	-4471	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.055000	0.621891	
mm_70944.1	chr8	26158119	26158319	+	1	NA	NA	NA	50	NM_199042	73754	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0.060000	0.621891	
mm_98451.1	chr11	94945275	94945475	+	1	NA	NA	NA	9151	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.025000	0.567164	
mm_98099.1	chr11	86630144	86630344	+	1	NA	NA	NA	-25827	NR_106195	102465902		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	0.010000	0.452736	
mm_49579.1	chr6	30642216	30642416	+	1	NA	NA	NA	3098	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.030000	0.552239	
mm_13677.1	chr2	116878591	116878791	+	1	NA	NA	NA	0	NM_026104	67356	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	0.015000	0.497512	
mm_111771.1	chr12	104035742	104035942	-	1	NA	NA	NA	8601	NM_026535	68054	Mm.20286	NM_026535	ENSMUSG00000041567	Serpina12	4632419J12Rik	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12	protein-coding	0.025000	0.527363	
mm_104803.1	chr11	98775102	98775302	-	1	NA	NA	NA	175	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.040000	0.557214	
mm_127245.1	chr15	99601149	99601349	+	1	NA	NA	NA	-151	NM_175087	11831	Mm.202309	NM_175087	ENSMUSG00000043144	Aqp6	AI790337	aquaporin 6	protein-coding	0.015000	0.611940	
mm_7259.1	chr1	93803694	93803894	-	1	NA	NA	NA	-171	NM_025454	66262	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	0.075000	0.676617	
mm_17093.1	chr2	23040010	23040210	-	1	NA	NA	NA	131	NM_001077192	11308	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.060000	0.616915	
mm_3730.1	chr1	155083620	155083820	+	1	NA	NA	NA	15916	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.065000	0.721393	
mm_138042.1	chr17	33920438	33920638	+	1	NA	NA	NA	1060	NM_009318	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.060000	0.547264	4(TAGTTTTTAAGG,-,0.00)
mm_125954.1	chr15	76249152	76249352	+	1	NA	NA	NA	1061	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.035000	0.527363	
mm_134680.1	chr16	22411768	22411968	-	1	NA	NA	NA	27702	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.015000	0.562189	
mm_27185.1	chr3	34649761	34649961	-	1	NA	NA	NA	-134	NM_011443	20674	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0.125000	0.761194	
mm_56587.1	chr6	107438216	107438416	-	1	NA	NA	NA	-91410	NM_008516	16979	Mm.428543	NM_008516	ENSMUSG00000034648	Lrrn1	2810047E21Rik|NLRR-1	leucine rich repeat protein 1, neuronal	protein-coding	0.005000	0.368159	86(TCTTTAATAGTC,+,0.00)
mm_108529.1	chr12	84151127	84151327	+	1	NA	NA	NA	-2738	NM_027438	70481	Mm.444348	NM_027438	ENSMUSG00000054383	Pnma1	5730402C15Rik	paraneoplastic antigen MA1	protein-coding	0.015000	0.557214	
mm_169448.1	chr14	59414480	59414680	-	1	NA	NA	NA	-21068	NM_001164289	628705	Mm.479244	NM_001164289	ENSMUSG00000091144	Phf11c	EG628705|Gm6907|Phf11	PHD finger protein 11C	protein-coding	0.025000	0.477612	-23(GACTCTTAAAAG,-,0.00)
mm_38323.1	chr4	137343965	137344165	-	1	NA	NA	NA	13694	NM_009861	12540	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.005000	0.333333	
mm_97473.1	chr11	78322881	78323081	+	1	NA	NA	NA	-92	NM_001303423	11676	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0.025000	0.582090	
mm_124292.1	chr14	103054759	103054959	-	1	NA	NA	NA	7847	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.572139	-2(AGCTCTTAAAGG,-,0.00),-1(GCTCTTAAAGGC,+,0.00),0(CTCTTAAAGGCC,+,0.00)
mm_57636.1	chr6	128358100	128358300	-	1	NA	NA	NA	-2349	NM_011657	22158	Mm.291783	NM_011657	ENSMUSG00000001521	Tulp3	2310022L06Rik|AI316887	tubby-like protein 3	protein-coding	0.035000	0.462687	
mm_83229.1	chr9	42343788	42343988	-	1	NA	NA	NA	56041	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.020000	0.522388	
mm_145717.1	chr18	62994781	62994981	+	1	NA	NA	NA	16965	NM_028017	108123	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0.025000	0.522388	
mm_152132.1	chr19	7020850	7021050	-	1	NA	NA	NA	-1481	NM_153795	108101	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.035000	0.587065	
mm_15458.1	chr2	157426316	157426516	+	1	NA	NA	NA	2123	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.005000	0.552239	
mm_26105.1	chr3	137341025	137341225	+	1	NA	NA	NA	47	NM_016885	59308	Mm.27343	NM_016885	ENSMUSG00000054690	Emcn	0610012K22Rik|AI315669|Muc14	endomucin	protein-coding	0.015000	0.492537	
mm_127514.1	chr15	101850054	101850254	+	1	NA	NA	NA	632	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.010000	0.487562	
mm_15647.1	chr2	163068118	163068318	+	1	NA	NA	NA	128	NR_105970	102465607		NR_105970	ENSMUSG00000099091	Mir7003	Gm27340|mmu-mir-7003	microRNA 7003	ncRNA	0.040000	0.592040	
mm_58039.1	chr6	136821477	136821677	-	1	NA	NA	NA	6639	NM_021714	60321	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	0.015000	0.527363	
mm_135116.1	chr16	35841017	35841217	-	1	NA	NA	NA	30265	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.020000	0.417910	
mm_86107.1	chr9	115310372	115310572	-	1	NA	NA	NA	-51	NM_024222	68292	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0.105000	0.721393	
mm_83492.1	chr9	45945851	45946051	-	1	NA	NA	NA	-6361	NR_106055	102465659		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.030000	0.592040	
mm_100032.1	chr11	114931227	114931427	+	1	NA	NA	NA	3059	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.005000	0.477612	
mm_2596.1	chr1	119526089	119526289	+	1	NA	NA	NA	35	NM_146103	226351	Mm.439806	NM_146103	ENSMUSG00000098923	Tmem185b	2500001K11Rik	transmembrane protein 185B	protein-coding	0.120000	0.711443	
mm_68468.1	chr7	110648634	110648834	-	1	NA	NA	NA	21065	NM_009627	11535	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.020000	0.547264	
mm_161368.1	chr14	63509237	63509437	-	1	NA	NA	NA	-245	NM_021480	58865	Mm.354229	NM_021480	ENSMUSG00000021953	Tdh	-	L-threonine dehydrogenase	protein-coding	0.030000	0.467662	
mm_159604.1	chr4	129118682	129118882	-	1	NA	NA	NA	1390	NM_001286083	15444	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	0.025000	0.562189	
mm_63635.1	chr7	128523558	128523758	+	1	NA	NA	NA	75	NM_013863	29810	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0.045000	0.577114	
mm_137901.1	chr17	31820253	31820453	+	1	NA	NA	NA	35439	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.005000	0.572139	
mm_79096.1	chr9	46242907	46243107	+	1	NA	NA	NA	2163	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.030000	0.597015	
mm_49365.1	chr6	23248443	23248643	+	1	NA	NA	NA	-279	NM_028462	73191	Mm.55115	NM_028462	ENSMUSG00000029697	Fezf1	3110069A13Rik|Fez|Zfp312-like|fez-like	Fez family zinc finger 1	protein-coding	0.050000	0.572139	
mm_50602.1	chr6	49244643	49244843	+	1	NA	NA	NA	19309	NM_001347209	101214	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha homolog (Drosophila)	protein-coding	0.010000	0.383085	
mm_81623.1	chr9	110834558	110834758	+	1	NA	NA	NA	70	NM_153172	260408	Mm.79114	NM_153172	ENSMUSG00000047257	Prss45	Tespl|Tessp5	protease, serine 45	protein-coding	0.070000	0.597015	
mm_77245.1	chr8	115705292	115705492	-	1	NA	NA	NA	1502	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.015000	0.427861	
mm_76027.1	chr8	75109252	75109452	-	1	NA	NA	NA	-157	NM_001302540	17218	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0.070000	0.552239	
mm_162962.1	chr11	6547115	6547315	+	1	NA	NA	NA	328	NM_001190343	216527	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0.085000	0.746269	
mm_73269.1	chr8	104540677	104540877	+	1	NA	NA	NA	-30	NM_053070	12354	Mm.129265	NM_053070	ENSMUSG00000031883	Car7	AV343731|Ca7	carbonic anhydrase 7	protein-coding	0.100000	0.736318	-2(CACTTTAAGAGG,-,0.00),-1(ACTTTAAGAGGC,+,0.00)
mm_125166.1	chr15	31273105	31273305	+	1	NA	NA	NA	48820	NM_146057	223453	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.035000	0.557214	
mm_82209.1	chr9	124103702	124103902	+	1	NA	NA	NA	1619	NM_009915	12772	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.000000	0.398010	
mm_16546.1	chr2	181714944	181715144	+	1	NA	NA	NA	28	NM_001318923	18389	Mm.285075	NM_011012	ENSMUSG00000027584	Oprl1	KOR-3|KOR3|LC132|MOR-C|NOP|ORGC|ORL1|Oprl|XOR1|morc	opioid receptor-like 1	protein-coding	0.030000	0.527363	
mm_106062.1	chr11	116131021	116131221	-	1	NA	NA	NA	7	NM_178802	338364	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0.060000	0.616915	76(GCCCCTTTAAGA,-,0.00),78(CCCTTTAAGAGA,-,0.00),79(CCTTTAAGAGAT,+,0.00)
mm_130569.1	chr15	99457648	99457848	-	1	NA	NA	NA	0	NM_001001884	380969	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	0.055000	0.691542	-16(GCCCCTTTAAAG,-,0.00),-15(CCCCTTTAAAGC,-,0.00),-14(CCCTTTAAAGCC,+,0.00),-13(CCTTTAAAGCCT,+,0.00)
mm_151834.1	chr19	5719211	5719411	-	1	NA	NA	NA	7006	NM_001114595	114601	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0.020000	0.522388	
mm_102423.1	chr11	59412992	59413192	-	1	NA	NA	NA	36864	NM_144521	67826	Mm.26680	NM_144521	ENSMUSG00000009894	Snap47	1110031B06Rik|SNAP-47	synaptosomal-associated protein, 47	protein-coding	0.025000	0.547264	
mm_169935.1	chr16	60760227	60760427	-	1	NA	NA	NA	-154796	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0.005000	0.432836	
mm_15098.1	chr2	153345932	153346132	+	1	NA	NA	NA	-107	NM_001039939	228790	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0.145000	0.751244	
mm_20197.1	chr2	124222265	124222465	-	1	NA	NA	NA	-7	NR_040612	75946	Mm.415059	NR_040612	ENSMUSG00000086954	4930583P06Rik	-	RIKEN cDNA 4930583P06 gene	ncRNA	0.000000	0.407960	
mm_104069.1	chr11	86586115	86586315	-	1	NA	NA	NA	-2057	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.005000	0.333333	
mm_51768.1	chr6	88045289	88045489	+	1	NA	NA	NA	-119	NM_009005	19349	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.040000	0.592040	
mm_172481.1	chr7	50033750	50033950	-	1	NA	NA	NA	58500	NM_001037906	338352	Mm.383528	NM_001037906	ENSMUSG00000055409	Nell1	B230343H07Rik|l7R6	NEL-like 1	protein-coding	0.005000	0.467662	
mm_136140.1	chr16	87432505	87432705	-	1	NA	NA	NA	1	NM_001081068	78913	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	0.070000	0.616915	
mm_44198.1	chr5	3647627	3647827	-	1	NA	NA	NA	209	NM_026033	67210	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|ENSMUSG00000073241|Odag	GATA zinc finger domain containing 1	protein-coding	0.130000	0.796020	
mm_78531.1	chr9	35116654	35116854	+	1	NA	NA	NA	26	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.140000	0.781095	
mm_165989.1	chr4	109117672	109117872	-	1	NA	NA	NA	264	NM_173350	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.045000	0.537313	
mm_92682.1	chr10	80590211	80590411	-	1	NA	NA	NA	30	NM_145421	216169	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0.120000	0.706468	
mm_137162.1	chr17	23803550	23803750	+	1	NA	NA	NA	463	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.140000	0.721393	82(TCTTTTAGGGGG,+,0.00)
mm_151824.1	chr19	5637283	5637483	-	1	NA	NA	NA	-107	NM_009045	19697	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.070000	0.666667	-76(GTTTTTAGGGGA,+,0.00)
mm_79748.1	chr9	62367936	62368136	+	1	NA	NA	NA	26693	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.045000	0.601990	
mm_35923.1	chr4	53032022	53032222	-	1	NA	NA	NA	20242	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.010000	0.288557	
mm_37477.1	chr4	123565461	123565661	-	1	NA	NA	NA	-50859	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.025000	0.502488	
mm_150293.1	chr19	34493274	34493474	+	1	NA	NA	NA	-18239	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.010000	0.477612	-49(GAATATAAAAGC,-,0.00)
mm_58960.1	chr7	18925781	18925981	+	1	NA	NA	NA	-7	NM_001029877	384569	Mm.262724	NM_001029877	ENSMUSG00000030411	Nova2	Gm1424	neuro-oncological ventral antigen 2	protein-coding	0.125000	0.830846	
mm_80969.1	chr9	103111942	103112142	+	1	NA	NA	NA	-32	NM_173781	270192	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.115000	0.776119	
mm_62403.1	chr7	101110641	101110841	+	1	NA	NA	NA	1966	NM_199012	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.000000	0.333333	
mm_44638.1	chr5	28123554	28123754	-	1	NA	NA	NA	-42042	NM_010134	13799	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	0.015000	0.537313	
mm_4683.1	chr1	180583716	180583916	+	1	NA	NA	NA	-3385	NR_105869	102466761		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	0.025000	0.527363	-14(GTCTTTAAGAGC,-,0.00),-13(TCTTTAAGAGCG,+,0.00)
mm_45671.1	chr5	77211374	77211574	-	1	NA	NA	NA	-3	NM_001289768	69982	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0.055000	0.597015	
mm_65378.1	chr7	25089806	25090006	-	1	NA	NA	NA	7269	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.015000	0.527363	
mm_106767.1	chr12	4592940	4593140	+	1	NA	NA	NA	32	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.145000	0.776119	
mm_139663.1	chr17	57406888	57407088	+	1	NA	NA	NA	48302	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.015000	0.432836	
mm_73223.1	chr8	100160508	100160708	+	1	NA	NA	NA	743934	NR_132435	234624	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	0.000000	0.323383	-80(GCTTTAATATTC,+,0.00)
mm_150501.1	chr19	39021953	39022153	+	1	NA	NA	NA	15034	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.005000	0.437811	
mm_37188.1	chr4	117375398	117375598	-	1	NA	NA	NA	-37	NM_001310729	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.005000	0.487562	3(TTCTTTAAAAAC,-,0.00)
mm_55836.1	chr6	83143161	83143361	-	1	NA	NA	NA	6177	NM_009106	20166	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0.030000	0.562189	
mm_80328.1	chr9	75037625	75037825	+	1	NA	NA	NA	-7	NM_021548	59046	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	0.135000	0.746269	
mm_79760.1	chr9	62409174	62409374	+	1	NA	NA	NA	67931	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.015000	0.502488	
mm_46567.1	chr5	107173318	107173518	-	1	NA	NA	NA	116177	NM_011578	21814	Mm.200775	NM_011578	ENSMUSG00000029287	Tgfbr3	1110036H20Rik|AU015626|AW215636|TBRIII	transforming growth factor, beta receptor III	protein-coding	0.010000	0.368159	
mm_43804.1	chr5	142903028	142903228	+	1	NA	NA	NA	3626	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.000000	0.567164	
mm_67872.1	chr7	99180192	99180392	-	1	NA	NA	NA	2421	NM_026384	67800	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	0.000000	0.507463	
mm_109184.1	chr12	108476913	108477113	+	1	NA	NA	NA	54197	NM_001043335	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.000000	0.393035	
mm_8563.1	chr1	155280336	155280536	-	1	NA	NA	NA	121733	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.015000	0.457711	
mm_3004.1	chr1	133256034	133256234	+	1	NA	NA	NA	10037	NM_182930	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding	0.020000	0.552239	
mm_117138.1	chr13	60940140	60940340	-	1	NA	NA	NA	1695	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding	0.015000	0.398010	-20(TCTCATAAAAGC,-,0.00)
mm_51297.1	chr6	72306818	72307018	+	1	NA	NA	NA	2308	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.015000	0.606965	
mm_64206.1	chr7	141475179	141475379	+	1	NA	NA	NA	43	NM_053082	64540	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.105000	0.721393	
mm_48934.1	chr6	4537850	4538050	+	1	NA	NA	NA	32332	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.025000	0.527363	
mm_89554.1	chr10	94846882	94847082	+	1	NA	NA	NA	97596	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.010000	0.492537	-33(ACCTATATAAGC,-,0.00)
mm_70853.1	chr8	23669562	23669762	+	1	NA	NA	NA	1	NM_177086	320158	Mm.121274	NM_177086	ENSMUSG00000037492	Zmat4	9630048M01Rik	zinc finger, matrin type 4	protein-coding	0.080000	0.631841	
mm_52009.1	chr6	93233963	93234163	+	1	NA	NA	NA	293481	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.000000	0.437811	
mm_160461.1	chr8	109647384	109647584	+	1	NA	NA	NA	32967	NM_181544	244646	Mm.436810	NM_181544	ENSMUSG00000048827	Pkd1l3	-	polycystic kidney disease 1 like 3	protein-coding	0.030000	0.487562	
mm_118762.1	chr14	22432948	22433148	+	1	NA	NA	NA	109750	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.005000	0.383085	
mm_135223.1	chr16	36784652	36784852	-	1	NA	NA	NA	210	NM_001145899	57738	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.010000	0.522388	
mm_167634.1	chr9	62868633	62868833	+	1	NA	NA	NA	-6709	NR_003965	677044	Mm.422004	NR_003965	ENSMUSG00000074250	Gm10653	ENSMUSG00000074250	ribsomal protein S2 pseudogene	pseudo	0.020000	0.592040	
mm_113955.1	chr13	51101117	51101317	+	1	NA	NA	NA	-330	NM_001283029	20729	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0.165000	0.835821	
mm_38034.1	chr4	133875167	133875367	-	1	NA	NA	NA	-536	NM_001285506	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.010000	0.567164	
mm_84203.1	chr9	60680877	60681077	-	1	NA	NA	NA	6557	NM_001311095	102747	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0.005000	0.398010	
mm_60134.1	chr7	37447506	37447706	+	1	NA	NA	NA	322146	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.010000	0.393035	
mm_167885.1	chrX	53460220	53460420	+	1	NA	NA	NA	25402	NR_034074	69501	Mm.63828	NM_175147	ENSMUSG00000060967	Etd	1700030K02Rik	embryonic testis differentiation	ncRNA	0.010000	0.497512	67(GACCAGAAAAGC,-,0.00)
mm_113294.1	chr13	30381252	30381452	+	1	NA	NA	NA	44996	NM_177322	11607	Mm.35062	NM_177322	ENSMUSG00000049115	Agtr1a	1810074K20Rik|AG2S|AI551199|AT1|AT1a|AT2R1|AT2R1A|Agtr-1a|Agtr1|Angtr-1a	angiotensin II receptor, type 1a	protein-coding	0.070000	0.582090	
mm_58201.1	chr6	143221326	143221526	-	1	NA	NA	NA	-24462	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.025000	0.507463	
mm_74383.1	chr8	128697898	128698098	+	1	NA	NA	NA	12344	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.000000	0.303483	
mm_56984.1	chr6	120493808	120494008	-	1	NA	NA	NA	-101	NM_033567	94047	Mm.23088	NM_033567	ENSMUSG00000094626	Cecr6	AW048664	cat eye syndrome chromosome region, candidate 6	protein-coding	0.115000	0.761194	
mm_149821.1	chr19	24300568	24300768	+	1	NA	NA	NA	-20082	NM_008044	14297	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	0.010000	0.452736	
mm_40002.1	chr5	32838001	32838201	+	1	NA	NA	NA	16129	NM_194340	215476	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	0.030000	0.407960	
mm_37846.1	chr4	132184289	132184489	-	1	NA	NA	NA	27867	NM_145393	213541	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0.005000	0.363184	
mm_134209.1	chr16	11175932	11176132	-	1	NA	NA	NA	361	NR_027502	106205	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	0.110000	0.661692	
mm_149431.1	chr19	11470594	11470794	+	1	NA	NA	NA	1326	NM_028595	73656	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.005000	0.373134	
mm_44808.1	chr5	33335700	33335900	-	1	NA	NA	NA	228	NM_021500	59003	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	0.100000	0.751244	
mm_77178.1	chr8	111691035	111691235	-	1	NA	NA	NA	-125	NM_025583	66473	Mm.34374	NM_025583	ENSMUSG00000031957	Ctrb1	2200008D09Rik|AI504462|Ctrb|Prt-2	chymotrypsinogen B1	protein-coding	0.005000	0.547264	
mm_105247.1	chr11	102349878	102350078	-	1	NA	NA	NA	15303	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.005000	0.452736	36(CTCTATAAAATG,-,0.00)
mm_14729.1	chr2	144265986	144266186	+	1	NA	NA	NA	116	NR_030762	100313519	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.010000	0.542289	
mm_169570.1	chr1	5197402	5197602	+	1	NA	NA	NA	114416	NM_001310442	108664	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	0.030000	0.477612	
mm_151876.1	chr19	5798296	5798496	-	1	NA	NA	NA	-2415	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.000000	0.288557	
mm_55968.1	chr6	85820886	85821086	-	1	NA	NA	NA	-14	NM_023493	69049	Mm.441449	NM_023493	ENSMUSG00000079494	Nat8f5	1810018F03Rik|Cml5	N-acetyltransferase 8 (GCN5-related) family member 5	protein-coding	0.015000	0.502488	
mm_133828.1	chr16	95900368	95900568	+	1	NA	NA	NA	-1755	NR_040485	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.030000	0.522388	
mm_53606.1	chr6	138325215	138325415	+	1	NA	NA	NA	-97790	NR_126073	319702	Mm.403785	NR_126072	ENSMUSG00000089957	A830011K09Rik	-	RIKEN cDNA A830011K09 gene	ncRNA	0.010000	0.472637	
mm_99868.1	chr11	109397553	109397753	+	1	NA	NA	NA	-28293	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.005000	0.422886	
mm_137064.1	chr17	19445137	19445337	+	1	NA	NA	NA	-59574	NM_001104562	627537	Mm.469858	NM_001104562	ENSMUSG00000091859	Vmn2r100	EG627537	vomeronasal 2, receptor 100	protein-coding	0.000000	0.467662	
mm_8548.1	chr1	155146706	155146906	-	1	NA	NA	NA	-26	NM_008209	15064	Mm.7580	NM_008209	ENSMUSG00000026471	Mr1	H2ls	major histocompatibility complex, class I-related	protein-coding	0.010000	0.402985	
mm_160118.1	chr7	27446585	27446785	-	1	NA	NA	NA	-96	NM_032610	80297	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0.160000	0.781095	
mm_118355.1	chr13	115090082	115090282	-	1	NA	NA	NA	-24	NM_134058	105083	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota homolog (Drosophila)	protein-coding	0.160000	0.731343	
mm_133507.1	chr16	90738175	90738375	+	1	NA	NA	NA	-49	NM_029844	77037	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.035000	0.522388	
mm_20672.1	chr2	132247667	132247867	-	1	NA	NA	NA	21	NM_027478	70612	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.125000	0.661692	
mm_58018.1	chr6	136661584	136661784	-	1	NA	NA	NA	209	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.080000	0.696517	
mm_122862.1	chr14	54907488	54907688	-	1	NA	NA	NA	5544	NM_021551	59049	Mm.27435	NM_021551	ENSMUSG00000022199	Slc22a17	1700094C23Rik|24p3R|AU041908|AW555662|BOIT|Boct	solute carrier family 22 (organic cation transporter), member 17	protein-coding	0.015000	0.557214	
mm_43684.1	chr5	138809488	138809688	+	1	NA	NA	NA	-10492	NM_001195128	384244	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0.010000	0.492537	
mm_157271.1	chrX	20146043	20146243	-	1	NA	NA	NA	86573	NM_021715	60322	Mm.44827	NM_021715	ENSMUSG00000037347	Chst7	2600013M07Rik|C6ST-2|GST5|Gn6st-4|glcNAc6ST-4	carbohydrate (N-acetylglucosamino) sulfotransferase 7	protein-coding	0.005000	0.557214	
mm_41406.1	chr5	90786516	90786716	+	1	NA	NA	NA	515	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.020000	0.517413	
mm_1707.1	chr1	75236354	75236554	+	1	NA	NA	NA	31	NM_001159883	56812	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.105000	0.726368	
mm_126978.1	chr15	93435849	93436049	+	1	NA	NA	NA	37485	NM_001285863	223828	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.030000	0.517413	
mm_101896.1	chr11	49119651	49119851	-	1	NA	NA	NA	-5994	NM_146337	258334	Mm.390388	NM_146337	ENSMUSG00000047511	Olfr1396	MOR276-2	olfactory receptor 1396	protein-coding	0.015000	0.467662	46(TTCCTTAAAAGG,-,0.00),48(CCTTAAAAGGTT,+,0.00)
mm_81306.1	chr9	108347777	108347977	+	1	NA	NA	NA	46	NM_011678	22258	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0.160000	0.746269	
mm_151433.1	chr19	57216060	57216260	+	1	NA	NA	NA	-128	NM_178688	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.015000	0.393035	
mm_160549.1	chr9	45803468	45803668	-	1	NA	NA	NA	25070	NM_001081373	214552	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	0.020000	0.502488	
mm_26673.1	chr3	154796126	154796326	+	1	NA	NA	NA	85093	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.010000	0.452736	
mm_54701.1	chr6	39558035	39558235	-	1	NA	NA	NA	-301	NM_172477	209773	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.040000	0.552239	
mm_73677.1	chr8	111536529	111536729	+	1	NA	NA	NA	-11	NM_001168622	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.160000	0.800995	
mm_111368.1	chr12	87225009	87225209	-	1	NA	NA	NA	13492	NM_027744	71275	Mm.79198	NM_027744	ENSMUSG00000072919	Noxred1	4933437F05Rik	NADP+ dependent oxidoreductase domain containing 1	protein-coding	0.030000	0.562189	
mm_127905.1	chr15	9523998	9524198	-	1	NA	NA	NA	5778	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.015000	0.398010	-66(TTCCATATAAGG,-,0.00)
mm_145269.1	chr18	52768042	52768242	+	1	NA	NA	NA	-2	NM_001199154	67847	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0.075000	0.696517	
mm_42077.1	chr5	110135917	110136117	+	1	NA	NA	NA	187	NM_001289580	231600	Mm.30264	NM_172717	ENSMUSG00000014668	Chfr	5730484M20Rik|C230082M18|RNF116	checkpoint with forkhead and ring finger domains	protein-coding	0.080000	0.666667	
mm_126260.1	chr15	79108654	79108854	+	1	NA	NA	NA	-229	NM_177461	27008	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	0.055000	0.686567	
mm_168185.1	chr10	59806411	59806611	+	1	NA	NA	NA	-73080	NM_019965	56709	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.020000	0.417910	
mm_170800.1	chr2	175606033	175606233	-	1	NA	NA	NA	-34258	NM_001177543	100039060	Mm.289463	NM_001177543	ENSMUSG00000078886	0610010B08Rik	Gm2026	RIKEN cDNA 0610010B08 gene	protein-coding	0.015000	0.487562	
mm_9913.1	chr1	189007741	189007941	-	1	NA	NA	NA	-1	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.110000	0.701493	
mm_32886.1	chr4	118961852	118962052	+	1	NA	NA	NA	-15	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.015000	0.547264	
mm_51147.1	chr6	70642274	70642474	+	1	NA	NA	NA	149801	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.517413	
mm_134145.1	chr16	10784651	10784851	-	1	NA	NA	NA	785	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.130000	0.731343	
mm_156839.1	chrX	164373432	164373632	+	1	NA	NA	NA	10	NM_010216	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.010000	0.373134	-88(CTCCTTATAAAG,-,0.00),-86(CCTTATAAAGCA,+,0.00)
mm_63359.1	chr7	127021257	127021457	+	1	NA	NA	NA	-146	NM_001102563	69017	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.055000	0.666667	
mm_69998.1	chr7	142385833	142386033	-	1	NA	NA	NA	1937	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.005000	0.532338	
mm_81124.1	chr9	106463432	106463632	+	1	NA	NA	NA	2408	NM_001159652	436090	Mm.482905	NM_001159652	ENSMUSG00000091735	Gpr62	4933402E03Rik	G protein-coupled receptor 62	protein-coding	0.025000	0.641791	
mm_50357.1	chr6	48647114	48647314	+	1	NA	NA	NA	-20	NM_001077410	243374	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	0.010000	0.517413	
mm_61282.1	chr7	66839661	66839861	+	1	NA	NA	NA	26	NM_001033877	233332	Mm.445763	NM_001033877	ENSMUSG00000058145	Adamts17	AU023434	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	protein-coding	0.045000	0.572139	
mm_90988.1	chr10	13868868	13869068	-	1	NA	NA	NA	-11	NM_001347362	66253	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	0.140000	0.771144	
mm_145159.1	chr18	46598473	46598673	+	1	NA	NA	NA	869	NM_010120	13664	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.025000	0.552239	
mm_27699.1	chr3	66981192	66981392	-	1	NA	NA	NA	-151	NM_001302359	20429	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0.125000	0.791045	
mm_153838.1	chr19	46327010	46327210	-	1	NA	NA	NA	46	NM_028627	73728	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.125000	0.696517	
mm_69279.1	chr7	127993632	127993832	-	1	NA	NA	NA	135	NM_023258	66824	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	0.035000	0.616915	
mm_130531.1	chr15	98933830	98934030	-	1	NA	NA	NA	460	NM_011654	22143	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.100000	0.597015	
mm_5446.1	chr1	36098457	36098657	-	1	NA	NA	NA	30157	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.010000	0.587065	
mm_129673.1	chr15	81374785	81374985	-	1	NA	NA	NA	-14120	NM_011399	20524	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	0.025000	0.432836	
mm_22009.1	chr2	167775110	167775310	-	1	NA	NA	NA	84033	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.010000	0.592040	20(CCTCTTAAGGTG,+,0.00)
mm_18436.1	chr2	60881095	60881295	-	1	NA	NA	NA	243	NM_001141932	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.125000	0.766169	
mm_35544.1	chr4	41489961	41490161	-	1	NA	NA	NA	13014	NM_001085515	329828	Mm.27054	NM_001085515	ENSMUSG00000046312	AI464131	AA408153|AI604836|Gm762|Kiaa1161|NET37	expressed sequence AI464131	protein-coding	0.015000	0.427861	
mm_151572.1	chr19	60811758	60811958	+	1	NA	NA	NA	288	NM_001167829	67894	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	0.100000	0.716418	
mm_94219.1	chr11	3198495	3198695	+	1	NA	NA	NA	-3758	NM_001166548	74203	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0.000000	0.427861	
mm_114698.1	chr13	83504094	83504294	+	1	NA	NA	NA	160	NM_001347564	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.030000	0.527363	
mm_149015.1	chr19	8740653	8740853	+	1	NA	NA	NA	35	NM_001177347	74307	Mm.48791	NM_001177347	ENSMUSG00000090840	1700092M07Rik	-	RIKEN cDNA 1700092M07 gene	protein-coding	0.025000	0.601990	
mm_167622.1	chr9	59291305	59291505	-	1	NA	NA	NA	-167	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.080000	0.597015	
mm_126787.1	chr15	86234779	86234979	+	1	NA	NA	NA	20420	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.015000	0.577114	
mm_80073.1	chr9	69760991	69761191	+	1	NA	NA	NA	-55	NR_040765	319970	Mm.186434	NR_040765	ENSMUSG00000097623	B230323A14Rik	-	RIKEN cDNA B230323A14 gene	ncRNA	0.055000	0.626866	
mm_170277.1	chr18	27463044	27463244	-	1	NA	NA	NA	-1097020	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.025000	0.482587	
mm_67723.1	chr7	90067926	90068126	-	1	NA	NA	NA	38867	NR_110364	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	0.010000	0.412935	
mm_109109.1	chr12	105395479	105395679	+	1	NA	NA	NA	8181	NR_045085	100040339	Mm.240751	NR_045085		Gm2721	-	predicted gene 2721	ncRNA	0.035000	0.527363	
mm_66319.1	chr7	41393238	41393438	-	1	NA	NA	NA	41	NM_001199330	233168	Mm.379390	NM_183167	ENSMUSG00000056383	AI987944	-	expressed sequence AI987944	protein-coding	0.035000	0.522388	
mm_68388.1	chr7	109493534	109493734	-	1	NA	NA	NA	104	NM_001170913	330627	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	0.025000	0.547264	
mm_24288.1	chr3	89243736	89243936	+	1	NA	NA	NA	1177	NR_121683	360213	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.045000	0.626866	
mm_91163.1	chr10	20607262	20607462	-	1	NA	NA	NA	-59034	NM_001347366	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.005000	0.402985	
mm_135540.1	chr16	49771742	49771942	-	1	NA	NA	NA	72548	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.015000	0.427861	
mm_56459.1	chr6	98342631	98342831	-	1	NA	NA	NA	23	NM_001128092	330390	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0.005000	0.472637	
mm_132428.1	chr16	35770289	35770489	+	1	NA	NA	NA	3	NM_175111	66667	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	0.110000	0.671642	
mm_169044.1	chr13	14951012	14951212	+	1	NA	NA	NA	320854	NM_134067	105351	Mm.41450	NM_134067	ENSMUSG00000039182	AW209491	-	expressed sequence AW209491	protein-coding	0.040000	0.472637	
mm_163228.1	chr11	102653043	102653243	+	1	NA	NA	NA	-12442	NM_001127576	268491	Mm.447643	NM_001127576	ENSMUSG00000051455	Meioc	Gm1564|Gm663	meiosis specific with coiled-coil domain	protein-coding	0.000000	0.378109	
mm_167662.1	chr9	71395588	71395788	-	1	NA	NA	NA	89270	NM_001164793	28015	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	0.005000	0.427861	
mm_51479.1	chr6	83026189	83026389	+	1	NA	NA	NA	7182	NM_010070	13448	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.000000	0.567164	
mm_137453.1	chr17	26551358	26551558	+	1	NA	NA	NA	-10054	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.005000	0.472637	
mm_56976.1	chr6	120294199	120294399	-	1	NA	NA	NA	260	NM_198884	330406	Mm.321840	NM_198884	ENSMUSG00000041372	B4galnt3	AB114826|B4GalNAcT3|C330047A21	beta-1,4-N-acetyl-galactosaminyl transferase 3	protein-coding	0.095000	0.716418	
mm_101581.1	chr11	34406972	34407172	-	1	NA	NA	NA	92250	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.020000	0.477612	
mm_140450.1	chr17	88626458	88626658	+	1	NA	NA	NA	3	NM_029858	77057	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.010000	0.477612	
mm_51828.1	chr6	89392021	89392221	+	1	NA	NA	NA	-29508	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.000000	0.432836	
mm_136336.1	chr16	92521950	92522150	-	1	NA	NA	NA	23903	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	0.025000	0.517413	
mm_102624.1	chr11	62510847	62511047	-	1	NA	NA	NA	28314	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.000000	0.427861	
mm_78091.1	chr9	18292252	18292452	+	1	NA	NA	NA	85	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.085000	0.582090	
mm_63275.1	chr7	126762815	126763015	+	1	NA	NA	NA	3289	NM_011952	26417	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.050000	0.582090	
mm_100605.1	chr11	121260017	121260217	+	1	NA	NA	NA	130	NM_001080932	68837	Mm.209750	NM_001080932	ENSMUSG00000039275	Foxk2	1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1	forkhead box K2	protein-coding	0.215000	0.865672	
mm_10869.1	chr2	25214631	25214831	+	1	NA	NA	NA	-101	NM_028961	74472	Mm.176944	NM_028961	ENSMUSG00000036770	Stpg3	4933433C11Rik	sperm tail PG rich repeat containing 3	protein-coding	0.000000	0.572139	
mm_167567.1	chr9	42122455	42122655	-	1	NA	NA	NA	1734	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.015000	0.492537	
mm_26395.1	chr3	142594710	142594910	+	1	NA	NA	NA	-37	NM_010259	14468	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.005000	0.427861	
mm_146961.1	chr18	33384898	33385098	-	1	NA	NA	NA	78636	NM_001267717	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.060000	0.537313	
mm_83842.1	chr9	54434866	54435066	-	1	NA	NA	NA	66660	NM_172771	235380	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.000000	0.363184	
mm_80353.1	chr9	75185946	75186146	+	1	NA	NA	NA	-45968	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.055000	0.562189	
mm_59690.1	chr7	28444854	28445054	+	1	NA	NA	NA	4017	NM_001039192	63986	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.015000	0.487562	
mm_52611.1	chr6	117173678	117173878	+	1	NA	NA	NA	5243	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.030000	0.497512	33(GCTTTTATAACT,+,0.00)
mm_139870.1	chr17	70561645	70561845	+	1	NA	NA	NA	-2	NM_001128181	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.020000	0.472637	
mm_56588.1	chr6	107877420	107877620	-	1	NA	NA	NA	-187525	NM_001276356	74729	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	0.005000	0.283582	
mm_5956.1	chr1	56971243	56971443	-	1	NA	NA	NA	-9	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.040000	0.631841	
mm_140010.1	chr17	73158430	73158630	+	1	NA	NA	NA	50545	NM_001177967	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.010000	0.373134	
mm_113424.1	chr13	34046719	34046919	+	1	NA	NA	NA	9178	NM_026512	68021	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0.035000	0.482587	
mm_147328.1	chr18	42579676	42579876	-	1	NA	NA	NA	-124	NM_181543	240239	Mm.186779	NM_181543	ENSMUSG00000042816	Gpr151	C130082O03Rik|GalRL|PGR7|nGPCR-2037	G protein-coupled receptor 151	protein-coding	0.005000	0.477612	
mm_141240.1	chr17	27445083	27445283	-	1	NA	NA	NA	58350	NM_001013385	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.005000	0.482587	
mm_158014.1	chrX	95658332	95658532	-	1	NA	NA	NA	77	NM_001289696	245522	Mm.336158	NM_001003916	ENSMUSG00000035062	Zc4h2	Gm372|mKIAA1166	zinc finger, C4H2 domain containing	protein-coding	0.010000	0.507463	
mm_11982.1	chr2	55411716	55411916	+	1	NA	NA	NA	-24154	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.005000	0.412935	
mm_28233.1	chr3	88455239	88455439	-	1	NA	NA	NA	422	NM_013658	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.015000	0.592040	
mm_119004.1	chr14	29018140	29018340	+	1	NA	NA	NA	32	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding	0.005000	0.407960	
mm_11670.1	chr2	35284604	35284804	+	1	NA	NA	NA	2324	NM_146120	227753	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.030000	0.567164	
mm_6994.1	chr1	86358884	86359084	-	1	NA	NA	NA	471	NM_010880	17975	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	0.095000	0.661692	
mm_32622.1	chr4	114445020	114445220	+	1	NA	NA	NA	38396	NM_001085549	666048	Mm.331779	NM_001085549	ENSMUSG00000070867	Trabd2b	Gm12824|Hkat|OTTMUSG00000008561	TraB domain containing 2B	protein-coding	0.000000	0.432836	
mm_150474.1	chr19	38836487	38836687	+	1	NA	NA	NA	8	NM_145952	209478	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	0.155000	0.776119	
mm_163239.1	chr11	104329823	104330023	+	1	NA	NA	NA	98487	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.030000	0.547264	
mm_149247.1	chr19	10388931	10389131	+	1	NA	NA	NA	-59	NM_018801	54525	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0.140000	0.751244	
mm_67789.1	chr7	97645028	97645228	-	1	NA	NA	NA	-16	NR_126461	75448	Mm.439818	NR_126461	ENSMUSG00000086433	Rsf1os1	1700006D18Rik	remodeling and spacing factor 1, opposite strand 1	ncRNA	0.005000	0.398010	
mm_132195.1	chr16	32488012	32488212	+	1	NA	NA	NA	-233	NM_145932	106407	Mm.476915	NM_145932	ENSMUSG00000035699	Slc51a	AV001382|AW261577|D630035O19Rik|OSTalpha|Osta	solute carrier family 51, alpha subunit	protein-coding	0.015000	0.547264	
mm_171733.1	chr4	93889116	93889316	+	1	NA	NA	NA	-553705	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.025000	0.462687	
mm_130059.1	chr15	89180898	89181098	-	1	NA	NA	NA	-210	NM_138749	140570	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.075000	0.651741	
mm_164507.1	chr16	93547677	93547877	+	1	NA	NA	NA	56038	NM_145482	224440	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	0.010000	0.447761	
mm_86731.1	chr10	19065435	19065635	+	1	NA	NA	NA	-50125	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.000000	0.402985	-18(CCTTATAGGCAG,+,0.00)
mm_50755.1	chr6	53433876	53434076	+	1	NA	NA	NA	-139398	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.025000	0.497512	
mm_99246.1	chr11	101082525	101082725	+	1	NA	NA	NA	60	NM_001305982	71743	Mm.182271	NM_027896	ENSMUSG00000001755	Coasy	1300003G02Rik|Dpck|Ppat|Ukr1	Coenzyme A synthase	protein-coding	0.080000	0.651741	
mm_93192.1	chr10	94035679	94035879	-	1	NA	NA	NA	20	NM_172538	215008	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	0.070000	0.616915	
mm_101644.1	chr11	36498701	36498901	-	1	NA	NA	NA	445440	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.000000	0.437811	
mm_88745.1	chr10	80285166	80285366	+	1	NA	NA	NA	7102	NR_105876	102466207		NR_105876	ENSMUSG00000098672	Mir6911	Gm27822|mmu-mir-6911	microRNA 6911	ncRNA	0.025000	0.636816	
mm_129954.1	chr15	85042213	85042413	-	1	NA	NA	NA	5251	NM_133750	73225	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0.010000	0.368159	
mm_149791.1	chr19	23141032	23141232	+	1	NA	NA	NA	-94	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.075000	0.597015	
mm_101837.1	chr11	48752404	48752604	-	1	NA	NA	NA	-47856	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.015000	0.422886	
mm_32959.1	chr4	119812980	119813180	+	1	NA	NA	NA	-1598	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.005000	0.552239	
mm_6288.1	chr1	69687141	69687341	-	1	NA	NA	NA	-1281	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.085000	0.616915	
mm_98595.1	chr11	95824431	95824631	+	1	NA	NA	NA	31	NM_153104	237928	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.115000	0.726368	22(GCATTTAAAGGG,+,0.00),22(GCATTTAAAGGG,-,0.00)
mm_150003.1	chr19	29287852	29288052	+	1	NA	NA	NA	36149	NM_008413	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.020000	0.353234	
mm_64914.1	chr7	16235301	16235501	-	1	NA	NA	NA	6930	NM_001146005	319430	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	0.000000	0.432836	
mm_56778.1	chr6	116633250	116633450	-	1	NA	NA	NA	-4351	NM_026057	67255	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0.015000	0.517413	
mm_96037.1	chr11	59556304	59556504	+	1	NA	NA	NA	13718	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.015000	0.442786	
mm_31051.1	chr4	41135998	41136198	+	1	NA	NA	NA	77	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.090000	0.701493	
mm_103313.1	chr11	73137897	73138097	-	1	NA	NA	NA	297	NM_010353	14841	Mm.42045	NM_010353	ENSMUSG00000050107	Gsg2	Haspin	germ cell associated 2, haspin	protein-coding	0.115000	0.711443	
mm_17848.1	chr2	34692461	34692661	-	1	NA	NA	NA	62671	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.000000	0.343284	-7(TTTTTTAAAGAC,+,0.00)
mm_86504.1	chr10	7212285	7212485	+	1	NA	NA	NA	-148	NM_172546	215748	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.045000	0.552239	
mm_30371.1	chr3	152193685	152193885	-	1	NA	NA	NA	60	NM_025926	67035	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0.055000	0.512438	
mm_57992.1	chr6	136172232	136172432	-	1	NA	NA	NA	1179	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.070000	0.646766	
mm_130225.1	chr15	96263952	96264152	-	1	NA	NA	NA	-9368	NR_130160	75768	Mm.212701	NR_130160	ENSMUSG00000097619	4833422M21Rik	4933406G12Rik	RIKEN cDNA 4833422M21 gene	ncRNA	0.015000	0.447761	
mm_77386.1	chr8	120116020	120116220	-	1	NA	NA	NA	1968	NM_001163761	234797	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.015000	0.542289	
mm_111927.1	chr12	108884305	108884505	-	1	NA	NA	NA	8793	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.015000	0.437811	
mm_44296.1	chr5	8622788	8622988	-	1	NA	NA	NA	64	NM_001347311	242819	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0.185000	0.756219	
mm_172292.1	chr6	9610010	9610210	+	1	NA	NA	NA	660091	NM_008751	18231	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.015000	0.462687	
mm_66951.1	chr7	62209389	62209589	-	1	NA	NA	NA	-124179	NR_049204	100885843		NR_049204	ENSMUSG00000095154	Mir344i	Gm26031|mir-344i|mmu-mir-344i	microRNA 344i	ncRNA	0.035000	0.547264	
mm_162698.1	chr10	20441806	20442006	+	1	NA	NA	NA	94087	NM_027930	71804	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0.000000	0.452736	-16(CCTTTAAAAATG,+,0.00)
mm_135401.1	chr16	44559358	44559558	-	1	NA	NA	NA	-588	NM_172506	117606	Mm.41561	NM_172506	ENSMUSG00000022687	Boc	4732455C11|mFLJ00376	biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein	protein-coding	0.015000	0.517413	
mm_29573.1	chr3	116968731	116968931	-	1	NA	NA	NA	121	NM_023245	114301	Mm.253736	NM_023245	ENSMUSG00000033377	Palmd	4631423C22Rik|PALML	palmdelphin	protein-coding	0.030000	0.517413	
mm_48196.1	chr5	137530971	137531171	-	1	NA	NA	NA	-1477	NR_105846	102465227		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0.055000	0.646766	
mm_154544.1	chrM	14584	14784	-	1	NA	NA	NA	NA	NA									0.035000	0.462687	
mm_101142.1	chr11	14599101	14599301	-	1	NA	NA	NA	24	NR_045918	73307	Mm.399291	NR_045918	ENSMUSG00000085561	1700046C09Rik	-	RIKEN cDNA 1700046C09 gene	ncRNA	0.035000	0.507463	
mm_40807.1	chr5	71657949	71658149	+	1	NA	NA	NA	259	NM_010251	14397	Mm.248731	NM_010251	ENSMUSG00000029211	Gabra4	Gabra-4	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	protein-coding	0.110000	0.706468	
mm_108951.1	chr12	102354690	102354890	+	1	NA	NA	NA	71149	NM_001161365	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.010000	0.572139	
mm_140256.1	chr17	84511456	84511656	+	1	NA	NA	NA	-339	NM_177606	213556	Mm.215159	NM_177606	ENSMUSG00000040852	Plekhh2	AI256725|E030001K05|mKIAA2028	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	protein-coding	0.025000	0.472637	-56(GGCCATTTAAAC,-,0.00),-54(CCATTTAAACCC,+,0.00)
mm_144356.1	chr18	16274480	16274680	+	1	NA	NA	NA	534666	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.020000	0.417910	
mm_77965.1	chr9	7764106	7764306	+	1	NA	NA	NA	129	NM_133739	71929	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0.150000	0.771144	
mm_58630.1	chr7	5083834	5084034	+	1	NA	NA	NA	3699	NM_001252454	13854	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0.025000	0.557214	
mm_130410.1	chr15	97977280	97977480	-	1	NA	NA	NA	13151	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.020000	0.547264	
mm_171070.1	chr3	11590346	11590546	+	1	NA	NA	NA	253913	NR_040751	100038545	Mm.388494	NR_040751	ENSMUSG00000104015	Gm10745	ENSMUSG00000074696	predicted gene 10745	ncRNA	0.025000	0.462687	
mm_2745.1	chr1	128591240	128591440	+	1	NA	NA	NA	959	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.050000	0.572139	
mm_75938.1	chr8	71558901	71559101	-	1	NA	NA	NA	-130	NM_001100462	434325	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	0.050000	0.621891	
mm_9915.1	chr1	189007802	189008002	-	1	NA	NA	NA	-62	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.085000	0.651741	
mm_124548.1	chr14	122475111	122475311	-	1	NA	NA	NA	-12	NR_045046	69248	Mm.235369	NR_045046	ENSMUSG00000085555	2610035F20Rik	-	RIKEN cDNA 2610035F20 gene	ncRNA	0.125000	0.741294	
mm_21668.1	chr2	164425426	164425626	-	1	NA	NA	NA	17662	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.020000	0.492537	
mm_7789.1	chr1	131477745	131477945	-	1	NA	NA	NA	49516	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.005000	0.298507	
mm_19657.1	chr2	102967434	102967634	-	1	NA	NA	NA	-65869	NM_001039150	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.005000	0.422886	
mm_77795.1	chr9	3029566	3029766	+	1	NA	NA	NA	9077	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.338308	
mm_2880.1	chr1	131828228	131828428	+	1	NA	NA	NA	316	NM_173865	98396	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	0.065000	0.666667	
mm_18181.1	chr2	45111033	45111233	-	1	NA	NA	NA	-5	NR_110572	433424	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|OTTMUSG00000012358|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0.045000	0.532338	-47(TCTTTTATAGCC,+,0.00)
mm_79894.1	chr9	65332462	65332662	+	1	NA	NA	NA	-13506	NM_016688	50996	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	0.020000	0.437811	15(TCCTTTAAACGG,+,0.00),16(CCTTTAAACGGC,+,0.00)
mm_92787.1	chr10	81298716	81298916	-	1	NA	NA	NA	5853	NM_001146687	18717	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.020000	0.532338	
mm_144934.1	chr18	37730877	37731077	+	1	NA	NA	NA	-177	NM_033577	93702	Mm.247203	NM_033577	ENSMUSG00000103749	Pcdhgb5	-	protocadherin gamma subfamily B, 5	protein-coding	0.060000	0.527363	
mm_16572.1	chr2	3422521	3422721	-	1	NA	NA	NA	27	NM_008579	104362	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	0.010000	0.457711	
mm_165840.1	chr3	159495347	159495547	+	1	NA	NA	NA	14	NM_001172093	76131	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	0.070000	0.592040	
mm_134374.1	chr16	17132283	17132483	-	1	NA	NA	NA	0	NM_022324	64136	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	0.090000	0.686567	
mm_168217.1	chr10	7617360	7617560	-	1	NA	NA	NA	27660	NM_172784	237253	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	0.035000	0.572139	
mm_155838.1	chrX	100795363	100795563	+	1	NA	NA	NA	18192	NM_001177780	53310	Mm.4615	NM_016747	ENSMUSG00000000881	Dlg3	Dlgh3|SAP102|mKIAA1232	discs, large homolog 3 (Drosophila)	protein-coding	0.020000	0.507463	
mm_160399.1	chr8	70783409	70783609	-	1	NA	NA	NA	6647	NR_029440	72093	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	0.045000	0.611940	
mm_14873.1	chr2	148799649	148799849	+	1	NA	NA	NA	910	NM_009978	13012	Mm.20435	NM_009978	ENSMUSG00000027442	Cst8	Cres|Cst-rs1	cystatin 8 (cystatin-related epididymal spermatogenic)	protein-coding	0.020000	0.457711	
mm_172088.1	chr6	17656263	17656463	-	1	NA	NA	NA	19265	NM_007604	12343	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.020000	0.417910	
mm_13238.1	chr2	98662371	98662571	+	1	NA	NA	NA	1194814	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.030000	0.348259	
mm_147824.1	chr18	61911784	61911984	-	1	NA	NA	NA	-32	NM_001164491	319713	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	0.075000	0.656716	
mm_114063.1	chr13	54379667	54379867	+	1	NA	NA	NA	8418	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.020000	0.427861	
mm_115713.1	chr13	15853043	15853243	-	1	NA	NA	NA	45900	NR_046131	328190	Mm.446957	NR_046131		A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0.000000	0.467662	
mm_62964.1	chr7	119793900	119794100	+	1	NA	NA	NA	58	NM_027698	71151	Mm.274160	NM_027698	ENSMUSG00000030929	Eri2	4933424N09Rik|Exod1|mKIAA1504	exoribonuclease 2	protein-coding	0.130000	0.681592	
mm_57002.1	chr6	121027353	121027553	-	1	NA	NA	NA	-37011	NR_138098	100043793	Mm.448053	NR_138098		Gm4651	-	predicted gene 4651	ncRNA	0.010000	0.542289	
mm_51034.1	chr6	65590324	65590524	+	1	NA	NA	NA	26	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.020000	0.417910	
mm_66708.1	chr7	45923323	45923523	-	1	NA	NA	NA	-1997	NM_010129	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.050000	0.577114	
mm_34724.1	chr4	152177923	152178123	+	1	NA	NA	NA	-77	NM_133348	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.155000	0.786070	
mm_53813.1	chr6	147032492	147032692	+	1	NA	NA	NA	55	NM_025620	66532	Mm.45888	NM_025620	ENSMUSG00000040121	Rep15	2210417D09Rik	RAB15 effector protein	protein-coding	0.010000	0.472637	-89(GGGTCTATATGG,-,0.00)
mm_35113.1	chr4	9917289	9917489	-	1	NA	NA	NA	8	NR_004448	74662	Mm.483401	NR_004448	ENSMUSG00000082843	4930448K20Rik	1700009K09Rik	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.000000	0.462687	
mm_50942.1	chr6	57824447	57824647	+	1	NA	NA	NA	578	NM_146168	232023	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.065000	0.592040	68(GCCTCTAAAAGC,-,0.00),69(CCTCTAAAAGCC,+,0.00)
mm_169674.1	chr15	66056996	66057196	+	1	NA	NA	NA	-80292	NM_001145096	654498	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0.020000	0.517413	
mm_73091.1	chr8	94532942	94533142	+	1	NA	NA	NA	14	NM_153507	234577	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0.145000	0.800995	
mm_96966.1	chr11	70647524	70647724	+	1	NA	NA	NA	337	NM_027445	70510	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0.025000	0.482587	
mm_69818.1	chr7	141264421	141264621	-	1	NA	NA	NA	1903	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.015000	0.572139	
mm_121675.1	chr14	12822543	12822743	-	1	NA	NA	NA	436	NM_001042617	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	0.100000	0.726368	
mm_149425.1	chr19	11454558	11454758	+	1	NA	NA	NA	11100	NM_021718	60361	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	0.000000	0.303483	
mm_14539.1	chr2	132792435	132792635	+	1	NA	NA	NA	11257	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.030000	0.532338	
mm_170747.1	chr2	155963611	155963811	+	1	NA	NA	NA	7153	NM_177217	16328	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	0.010000	0.512438	
mm_42810.1	chr5	121835095	121835295	+	1	NA	NA	NA	909	NM_001306126	16923	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.010000	0.552239	
mm_171945.1	chr5	72932916	72933116	-	1	NA	NA	NA	18654	NM_153567	75991	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0.025000	0.532338	
mm_45401.1	chr5	66151762	66151962	-	1	NA	NA	NA	92	NM_001127382	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.045000	0.557214	
mm_71277.1	chr8	40919598	40919798	+	1	NA	NA	NA	-6535	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.010000	0.393035	71(AGCTCTTTAAGG,-,0.00)
mm_34264.1	chr4	141421692	141421892	+	1	NA	NA	NA	1013	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.060000	0.671642	
mm_105708.1	chr11	108290070	108290270	-	1	NA	NA	NA	53718	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.000000	0.452736	
mm_11830.1	chr2	45085864	45086064	+	1	NA	NA	NA	24313	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.000000	0.472637	
mm_31042.1	chr4	41135449	41135649	+	1	NA	NA	NA	-472	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.150000	0.810945	
mm_160525.1	chr9	36258223	36258423	-	1	NA	NA	NA	-122693	NR_030729	100041618	Mm.484847	NR_030729	ENSMUSG00000098390	Gm3434	-	predicted gene 3434	ncRNA	0.000000	0.388060	
mm_19446.1	chr2	91982748	91982948	-	1	NA	NA	NA	-19285	NM_138306	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.040000	0.606965	
mm_45471.1	chr5	69341607	69341807	-	1	NA	NA	NA	2	NM_175519	243043	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	0.080000	0.681592	-72(CCCTTTAAATGA,-,0.00)
mm_18262.1	chr2	52292774	52292974	-	1	NA	NA	NA	1872	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.030000	0.487562	
mm_75366.1	chr8	45294770	45294970	-	1	NA	NA	NA	-35	NM_008455	16621	Mm.482691	NM_008455	ENSMUSG00000109764	Klkb1	APS|Kal-3|Kal3|Klk3|PSA	kallikrein B, plasma 1	protein-coding	0.015000	0.452736	
mm_147714.1	chr18	60812412	60812612	-	1	NA	NA	NA	436	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.005000	0.587065	
mm_150438.1	chr19	37576886	37577086	+	1	NA	NA	NA	26568	NM_175353	107371	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0.040000	0.457711	
mm_51697.1	chr6	86578218	86578418	+	1	NA	NA	NA	-49856	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.010000	0.522388	
mm_83946.1	chr9	56860391	56860591	-	1	NA	NA	NA	-4613	NM_139001	121021	Mm.41329	NM_139001	ENSMUSG00000032911	Cspg4	4732461B14Rik|AN2|NG2	chondroitin sulfate proteoglycan 4	protein-coding	0.010000	0.517413	
mm_9937.1	chr1	190144456	190144656	-	1	NA	NA	NA	26124	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding	0.000000	0.412935	
mm_55069.1	chr6	49051020	49051220	-	1	NA	NA	NA	14602	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.020000	0.522388	
mm_118279.1	chr13	112652264	112652464	-	1	NA	NA	NA	-54	NM_001145885	13206	Mm.12818	NM_010029	ENSMUSG00000021758	Ddx4	AV206478|Mvh|VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding	0.160000	0.741294	
mm_11591.1	chr2	33216017	33216217	+	1	NA	NA	NA	156	NM_011923	26360	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0.025000	0.611940	
mm_104138.1	chr11	86993563	86993763	-	1	NA	NA	NA	99	NM_001005341	77864	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee-like 2 (Drosophila)	protein-coding	0.115000	0.701493	-32(GGCTTTAAGAGC,-,0.00),-31(GCTTTAAGAGCG,+,0.00)
mm_153932.1	chr19	47416223	47416423	-	1	NA	NA	NA	48088	NM_001164717	14218	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.020000	0.592040	
mm_15525.1	chr2	158382479	158382679	+	1	NA	NA	NA	6941	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.030000	0.457711	
mm_25306.1	chr3	105987279	105987479	+	1	NA	NA	NA	13577	NM_007696	12659	Mm.431947	NM_007696	ENSMUSG00000074340	Ovgp1	120kDa|AU016433|AU019448|Chit5|MOGP|OGP|muc9	oviductal glycoprotein 1	protein-coding	0.015000	0.407960	
mm_123353.1	chr14	63142411	63142611	-	1	NA	NA	NA	20049	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.015000	0.512438	
mm_172847.1	chr9	3532653	3532853	+	1	NA	NA	NA	404	NM_001033322	234889	Mm.91240	NM_001033322	ENSMUSG00000041624	Gucy1a2	6330407I18Rik|A230060L24Rik	guanylate cyclase 1, soluble, alpha 2	protein-coding	0.030000	0.597015	
mm_11858.1	chr2	48813906	48814106	+	1	NA	NA	NA	-103	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.205000	0.815920	
mm_96374.1	chr11	67237758	67237958	+	1	NA	NA	NA	46	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.010000	0.512438	-82(GCCTCTATAAAA,-,0.00),-80(CTCTATAAAAGT,-,0.00),-35(AACCCTTAAAGG,-,0.00)
mm_127460.1	chr15	101272090	101272290	+	1	NA	NA	NA	5344	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.035000	0.577114	-24(CAGCCTAAAAGG,-,0.00),-22(GCCTAAAAGGGC,+,0.00)
mm_61894.1	chr7	90025124	90025324	+	1	NA	NA	NA	-3935	NR_110365	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	0.010000	0.378109	
mm_940.1	chr1	56086923	56087123	+	1	NA	NA	NA	68045	NR_126076	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	0.000000	0.412935	
mm_32317.1	chr4	103563438	103563638	+	1	NA	NA	NA	181038	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA	0.070000	0.626866	
mm_32243.1	chr4	102511035	102511235	+	1	NA	NA	NA	-58925	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.010000	0.412935	
mm_48704.1	chr5	147065693	147065893	-	1	NA	NA	NA	10779	NM_080795	140887	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	0.000000	0.398010	-7(TTTTTTAAAGAC,+,0.00)
mm_1528.1	chr1	72849026	72849226	+	1	NA	NA	NA	23739	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.020000	0.572139	
mm_132401.1	chr16	35001302	35001502	+	1	NA	NA	NA	-21019	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.015000	0.472637	
mm_113405.1	chr13	33964569	33964769	+	1	NA	NA	NA	10	NM_001163241	18105	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	NAD(P)H dehydrogenase, quinone 2	protein-coding	0.040000	0.616915	
mm_41530.1	chr5	92683537	92683737	+	1	NA	NA	NA	202	NM_015756	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.055000	0.587065	
mm_77757.1	chr8	128686230	128686430	-	1	NA	NA	NA	676	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.090000	0.636816	
mm_152262.1	chr19	8798290	8798490	-	1	NA	NA	NA	167	NM_026329	67710	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	0.040000	0.582090	
mm_27243.1	chr3	36571878	36572078	-	1	NA	NA	NA	18	NM_009828	12428	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	0.140000	0.691542	
mm_22619.1	chr3	14641638	14641838	+	1	NA	NA	NA	11	NM_024495	71934	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	0.100000	0.741294	
mm_164220.1	chr15	84987756	84987956	-	1	NA	NA	NA	115	NM_001033273	223739	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.190000	0.810945	
mm_97038.1	chr11	72301542	72301742	+	1	NA	NA	NA	13	NM_001037713	327959	Mm.291131	NM_001037713	ENSMUSG00000040483	Xaf1	Fbox39	XIAP associated factor 1	protein-coding	0.015000	0.517413	
mm_58447.1	chr7	3303478	3303678	+	1	NA	NA	NA	46	NM_011102	18752	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	0.080000	0.666667	
mm_123733.1	chr14	70175276	70175476	-	1	NA	NA	NA	1439	NM_001253736	213019	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0.015000	0.597015	
mm_99073.1	chr11	99280137	99280337	+	1	NA	NA	NA	5001	NM_029393	75706	Mm.46378	NM_029393	ENSMUSG00000020913	Krt24	2310058N18Rik|2310075C18Rik	keratin 24	protein-coding	0.010000	0.437811	
mm_157606.1	chrX	53670327	53670527	-	1	NA	NA	NA	-19	NM_001018063	553127	Mm.328602	NM_001018063	ENSMUSG00000067924	Cxx1b	Mart8c	CAAX box 1B	protein-coding	0.040000	0.582090	
mm_4030.1	chr1	165769726	165769926	+	1	NA	NA	NA	6046	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.015000	0.427861	
mm_140576.1	chr17	9775767	9775967	-	1	NA	NA	NA	-1	NR_045433	71092	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	0.020000	0.477612	
mm_70623.1	chr8	13600534	13600734	+	1	NA	NA	NA	-38173	NM_001080781	66501	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.015000	0.537313	
mm_59532.1	chr7	27731285	27731485	+	1	NA	NA	NA	-24	NM_029531	22718	Mm.66913	NM_009560	ENSMUSG00000037640	Zfp60	6330516O17Rik|AI426106|AI449354|Mfg-3|Mfg3	zinc finger protein 60	protein-coding	0.070000	0.572139	
mm_49061.1	chr6	5390305	5390505	+	1	NA	NA	NA	7019	NM_023048	65255	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0.035000	0.432836	
mm_867.1	chr1	52150912	52151112	+	1	NA	NA	NA	31390	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.020000	0.587065	
mm_105434.1	chr11	104302302	104302502	-	1	NA	NA	NA	70966	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.040000	0.502488	
mm_27609.1	chr3	59195030	59195230	-	1	NA	NA	NA	-26	NM_001302203	84111	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	0.020000	0.537313	
mm_117849.1	chr13	98694931	98695131	-	1	NA	NA	NA	-200	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.095000	0.726368	
mm_154243.1	chr19	60766317	60766517	-	1	NA	NA	NA	7968	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.015000	0.507463	
mm_70500.1	chr8	12842765	12842965	+	1	NA	NA	NA	-10946	NR_045775	100504249	Mm.441494	NR_045775	ENSMUSG00000084780	Gm15350	OTTMUSG00000020611	predicted gene 15350	ncRNA	0.035000	0.532338	
mm_102365.1	chr11	58390055	58390255	-	1	NA	NA	NA	9509	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.015000	0.477612	
mm_72173.1	chr8	72311407	72311607	+	1	NA	NA	NA	-7555	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.000000	0.477612	-34(GCCTCTAAAATG,-,0.00)
mm_133240.1	chr16	77077027	77077227	+	1	NA	NA	NA	63058	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.040000	0.552239	
mm_76096.1	chr8	80057435	80057635	-	1	NA	NA	NA	473	NM_020259	15245	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0.060000	0.641791	
mm_127216.1	chr15	99295145	99295345	+	1	NA	NA	NA	-164	NM_018786	54614	Mm.358668	NM_018786	ENSMUSG00000023007	Prpf40b	2610317D23Rik|Hypc	pre-mRNA processing factor 40B	protein-coding	0.095000	0.746269	
mm_139490.1	chr17	56082029	56082229	+	1	NA	NA	NA	2498	NM_001304785	15193	Mm.12966	NM_008233	ENSMUSG00000002833	Hdgfrp2	HRP-2	hepatoma-derived growth factor, related protein 2	protein-coding	0.015000	0.517413	
mm_170641.1	chr19	8989157	8989357	+	1	NA	NA	NA	-27	NR_104460	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.100000	0.736318	
mm_92163.1	chr10	67548668	67548868	-	1	NA	NA	NA	187	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.160000	0.761194	
mm_81063.1	chr9	106171103	106171303	+	1	NA	NA	NA	274	NM_029896	77305	Mm.265125	NM_029896	ENSMUSG00000020257	Wdr82	9430077D24Rik|CDW5/WDR82	WD repeat domain containing 82	protein-coding	0.135000	0.716418	
mm_129170.1	chr15	76249270	76249470	-	1	NA	NA	NA	1179	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.015000	0.552239	
mm_49648.1	chr6	30806219	30806419	+	1	NA	NA	NA	65020	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.005000	0.447761	-63(CCCTTTATAATG,+,0.00)
mm_17104.1	chr2	24048737	24048937	-	1	NA	NA	NA	542	NM_080462	140483	Mm.33120	NM_080462	ENSMUSG00000026986	Hnmt	1500031F01Rik|AI788969	histamine N-methyltransferase	protein-coding	0.035000	0.467662	
mm_71934.1	chr8	70302657	70302857	+	1	NA	NA	NA	-28	NM_021538	59042	Mm.28668	NM_021538	ENSMUSG00000055681	Cope	1110005D17Rik|Cope1	coatomer protein complex, subunit epsilon	protein-coding	0.070000	0.562189	
mm_19729.1	chr2	104493663	104493863	-	1	NA	NA	NA	726	NM_010434	15259	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.140000	0.756219	
mm_39325.1	chr5	8567018	8567218	+	1	NA	NA	NA	55834	NM_001347311	242819	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0.015000	0.427861	
mm_67118.1	chr7	70361481	70361681	-	1	NA	NA	NA	-988	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.075000	0.552239	
mm_86829.1	chr10	21186850	21187050	+	1	NA	NA	NA	-25966	NM_010848	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.005000	0.442786	
mm_107125.1	chr12	19954136	19954336	+	1	NA	NA	NA	861543	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.110000	0.731343	
mm_10498.1	chr2	15049338	15049538	+	1	NA	NA	NA	-126	NM_028950	74455	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	0.020000	0.522388	
mm_66355.1	chr7	43527700	43527900	-	1	NA	NA	NA	5371	NM_001111058	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.005000	0.383085	
mm_118875.1	chr14	25857534	25857734	+	1	NA	NA	NA	15479	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.005000	0.562189	
mm_62035.1	chr7	92142988	92143188	+	1	NA	NA	NA	-23577	NR_131016	75845	Mm.437835	NR_131016	ENSMUSG00000109382	4930567K12Rik	-	RIKEN cDNA 4930567K12 gene	ncRNA	0.000000	0.378109	
mm_697.1	chr1	40580401	40580601	+	1	NA	NA	NA	274	NM_177084	110895	Mm.108602	NM_177084	ENSMUSG00000026065	Slc9a4	AW990558|D730009J23Rik|NHE4	solute carrier family 9 (sodium/hydrogen exchanger), member 4	protein-coding	0.050000	0.517413	
mm_137557.1	chr17	27655497	27655697	+	1	NA	NA	NA	6	NM_001286743	23969	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.135000	0.731343	
mm_160527.1	chr9	36843727	36843927	+	1	NA	NA	NA	168	NM_183171	235180	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	0.010000	0.467662	
mm_2888.1	chr1	131867186	131867386	+	1	NA	NA	NA	9	NM_144875	226422	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	0.055000	0.557214	
mm_166142.1	chr5	3340868	3341068	+	1	NA	NA	NA	-2925	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.040000	0.552239	
mm_154741.1	chrX	10312384	10312584	+	1	NA	NA	NA	60179	NM_008769	18416	Mm.2611	NM_008769	ENSMUSG00000031173	Otc	AI265390|Sf|spf	ornithine transcarbamylase	protein-coding	0.010000	0.442786	
mm_4177.1	chr1	171125220	171125420	+	1	NA	NA	NA	3659	NM_001081275	75472	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.025000	0.522388	
mm_138812.1	chr17	39846538	39846738	+	1	NA	NA	NA	3641	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.110000	0.666667	
mm_171219.1	chr3	59767127	59767327	+	1	NA	NA	NA	37441	NM_001101531	433597	Mm.297801	NM_001101531	ENSMUSG00000090527	Gm5538	-	predicted gene 5538	protein-coding	0.045000	0.492537	
mm_16602.1	chr2	5063852	5064052	-	1	NA	NA	NA	-14	NM_181848	71648	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0.120000	0.726368	
mm_52709.1	chr6	119479417	119479617	+	1	NA	NA	NA	-151	NM_133940	101358	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.175000	0.815920	
mm_111809.1	chr12	105222640	105222840	-	1	NA	NA	NA	-3	NM_001289468	21432	Mm.18154	NM_009337	ENSMUSG00000041359	Tcl1	Tcl1a	T cell lymphoma breakpoint 1	protein-coding	0.050000	0.567164	
mm_157211.1	chrX	12762002	12762202	-	1	NA	NA	NA	-129	NM_001048208	26896	Mm.17616	NM_012005	ENSMUSG00000064127	Med14	9930001L01Rik|AU041628|Crsp2|ENSMUSG00000073278|Gm641|ORF1|Trap170	mediator complex subunit 14	protein-coding	0.095000	0.711443	
mm_166246.1	chr5	77095177	77095377	-	1	NA	NA	NA	-10	NM_001159900	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.100000	0.721393	
mm_128814.1	chr15	67104974	67105174	-	1	NA	NA	NA	71808	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.010000	0.482587	
mm_76391.1	chr8	84844036	84844236	-	1	NA	NA	NA	2795	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.015000	0.457711	
mm_147151.1	chr18	36679023	36679223	-	1	NA	NA	NA	-92	NM_001083317	67843	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	0.075000	0.676617	
mm_79365.1	chr9	54534024	54534224	+	1	NA	NA	NA	-4860	NM_173778	244885	Mm.358924	NM_173778	ENSMUSG00000046460	Sh2d7	4933412E14Rik	SH2 domain containing 7	protein-coding	0.020000	0.572139	
mm_158679.1	chrX	159758146	159758346	-	1	NA	NA	NA	49645	NR_110970	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.010000	0.557214	
mm_141961.1	chr17	35120447	35120647	-	1	NA	NA	NA	745	NM_001303476	13001	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	0.025000	0.502488	
mm_135627.1	chr16	52298667	52298867	-	1	NA	NA	NA	154314	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.388060	
mm_79235.1	chr9	50499116	50499316	+	1	NA	NA	NA	4691	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.025000	0.512438	
mm_1127.1	chr1	60231242	60231442	+	1	NA	NA	NA	50743	NM_173444	269198	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	0.005000	0.313433	
mm_15123.1	chr2	153779146	153779346	+	1	NA	NA	NA	-1633	NR_036629	100504221	Mm.246778	NM_177849	ENSMUSG00000044083	Efcab8	A630008I04|EG329541	EF-hand calcium binding domain 8	ncRNA	0.055000	0.557214	
mm_108082.1	chr12	73964412	73964612	+	1	NA	NA	NA	-18	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.095000	0.671642	
mm_93681.1	chr10	117792590	117792790	-	1	NA	NA	NA	15	NM_134010	103468	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.090000	0.626866	
mm_92878.1	chr10	82622999	82623199	-	1	NA	NA	NA	129	NM_001135569	544717	Mm.334867	NM_001135567	ENSMUSG00000063320	1190007I07Rik	-	RIKEN cDNA 1190007I07 gene	protein-coding	0.105000	0.656716	
mm_78259.1	chr9	21848132	21848332	+	1	NA	NA	NA	4403	NM_177030	319899	Mm.128153	NM_177030	ENSMUSG00000032198	Dock6	2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395	dedicator of cytokinesis 6	protein-coding	0.015000	0.567164	
mm_171669.1	chr4	48273646	48273846	-	1	NA	NA	NA	5843	NM_029572	76299	Mm.317701	NM_029572	ENSMUSG00000028343	Erp44	1110001E24Rik|AI849526|AL033348|Txndc4	endoplasmic reticulum protein 44	protein-coding	0.020000	0.447761	
mm_79354.1	chr9	53850150	53850350	+	1	NA	NA	NA	-1	NM_025540	66402	Mm.29132	NM_025540	ENSMUSG00000042045	Sln	2310045A07Rik	sarcolipin	protein-coding	0.010000	0.542289	
mm_73671.1	chr8	111431289	111431489	+	1	NA	NA	NA	-18811	NR_105819	102466970		NR_105819	ENSMUSG00000098410	Mir1957b	Gm27725|mmu-mir-1957b	microRNA 1957b	ncRNA	0.000000	0.402985	
mm_86711.1	chr10	18853493	18853693	+	1	NA	NA	NA	8522	NM_022032	64058	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	0.030000	0.517413	
mm_32466.1	chr4	107688391	107688591	+	1	NA	NA	NA	-4329	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.035000	0.522388	
mm_133333.1	chr16	78694912	78695112	+	1	NA	NA	NA	-118324	NM_025967	67102	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.010000	0.427861	
mm_88542.1	chr10	78574419	78574619	+	1	NA	NA	NA	19	NM_173751	216136	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0.045000	0.582090	
mm_129982.1	chr15	86033922	86034122	-	1	NA	NA	NA	-245	NM_009886	12614	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	0.105000	0.696517	
mm_137471.1	chr17	26682584	26682784	+	1	NA	NA	NA	6288	NM_025272	11974	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.005000	0.412935	72(TCTTAAAAAGCA,+,0.00)
mm_85598.1	chr9	107541723	107541923	-	1	NA	NA	NA	42	NM_019720	56368	Mm.24833	NM_019720	ENSMUSG00000037190	Cyb561d2	AW049681|Tsp10	cytochrome b-561 domain containing 2	protein-coding	0.050000	0.517413	
mm_16588.1	chr2	3731223	3731423	-	1	NA	NA	NA	17865	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.005000	0.427861	-100(GTGTTTTAAGGG,-,0.00)
mm_130730.1	chr15	101225071	101225271	-	1	NA	NA	NA	15	NR_045328	380977	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.050000	0.582090	
mm_114910.1	chr13	94957292	94957492	+	1	NA	NA	NA	-18952	NM_172590	218460	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.000000	0.293532	
mm_141900.1	chr17	34951190	34951390	-	1	NA	NA	NA	-282	NR_028527	100217427		NR_028527	ENSMUSG00000093009	Snord52	MBII-297	small nucleolar RNA, C/D box 52	snoRNA	0.015000	0.432836	
mm_155037.1	chrX	42108278	42108478	+	1	NA	NA	NA	37136	NM_001301641	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.000000	0.422886	68(TCTTATATACTC,+,0.00)
mm_69602.1	chr7	135773646	135773846	-	1	NA	NA	NA	-57367	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.005000	0.497512	-49(TGCCTTAAAAAG,-,0.00),-47(CCTTAAAAAGCC,+,0.00)
mm_78695.1	chr9	40873890	40874090	+	1	NA	NA	NA	-137	NM_178245	244813	Mm.261652	NM_178245	ENSMUSG00000054360	Bsx	Bsx1a|Bsx1b	brain specific homeobox	protein-coding	0.060000	0.661692	
mm_94166.1	chr10	128803871	128804071	-	1	NA	NA	NA	399	NM_178066	73827	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	0.030000	0.537313	
mm_77105.1	chr8	111061718	111061918	-	1	NA	NA	NA	5479	NM_028274	72544	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	0.025000	0.557214	
mm_119089.1	chr14	30891626	30891826	+	1	NA	NA	NA	5250	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.010000	0.502488	
mm_135480.1	chr16	46001713	46001913	-	1	NA	NA	NA	8600	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.020000	0.497512	
mm_78162.1	chr9	21028049	21028249	+	1	NA	NA	NA	-1224	NM_023892	78369	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.025000	0.562189	
mm_122596.1	chr14	50930755	50930955	-	1	NA	NA	NA	-6	NM_001310507	219024	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161	transmembrane protein 55b	protein-coding	0.150000	0.746269	
mm_119896.1	chr14	54938388	54938588	+	1	NA	NA	NA	1991	NM_029390	67272	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	0.015000	0.522388	
mm_20327.1	chr2	127482459	127482659	-	1	NA	NA	NA	-60	NM_001111331	56461	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0.085000	0.721393	
mm_98432.1	chr11	94936153	94936353	+	1	NA	NA	NA	29	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.060000	0.651741	-32(TGGTATAAAAGG,-,0.00)
mm_124664.1	chr15	6301214	6301414	+	1	NA	NA	NA	1525	NM_001008702	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.015000	0.467662	
mm_163907.1	chr14	31187035	31187235	-	1	NA	NA	NA	-18494	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.025000	0.527363	
mm_135268.1	chr16	38376750	38376950	-	1	NA	NA	NA	14660	NM_022318	64082	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.035000	0.477612	
mm_21692.1	chr2	164461481	164461681	-	1	NA	NA	NA	610	NM_025575	66460	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0.080000	0.577114	
mm_24393.1	chr3	90266397	90266597	+	1	NA	NA	NA	-17	NM_201407	229541	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0.025000	0.582090	
mm_25568.1	chr3	116598123	116598323	+	1	NA	NA	NA	3265	NM_001289571	72776	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	0.030000	0.482587	
mm_19236.1	chr2	84715016	84715216	-	1	NA	NA	NA	48	NM_144887	228136	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0.170000	0.776119	
mm_141305.1	chr17	28217630	28217830	-	1	NA	NA	NA	9952	NM_027185	23853	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0.030000	0.542289	
mm_48989.1	chr6	4755893	4756093	+	1	NA	NA	NA	8687	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.030000	0.477612	
mm_5373.1	chr1	30873521	30873721	-	1	NA	NA	NA	-10365	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding	0.160000	0.820896	
mm_109105.1	chr12	105336846	105337046	+	1	NA	NA	NA	-47	NR_125773	69952	Mm.158311	NR_045047	ENSMUSG00000097929	Tunar	2810011L19Rik|Tuna	Tcl1 upstream neural differentiation associated RNA	ncRNA	0.100000	0.706468	
mm_26998.1	chr3	25832937	25833137	-	1	NA	NA	NA	320270	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.358209	
mm_32450.1	chr4	107357671	107357871	+	1	NA	NA	NA	-10013	NM_028355	72787	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0.005000	0.507463	
mm_84659.1	chr9	71723473	71723673	-	1	NA	NA	NA	48029	NM_026599	68178	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	0.015000	0.452736	-45(ATCTCTTAAAGG,-,0.00),-44(TCTCTTAAAGGG,+,0.00),-43(CTCTTAAAGGGC,+,0.00),-42(TCTTAAAGGGCC,+,0.00)
mm_110143.1	chr12	26448480	26448680	-	1	NA	NA	NA	7872	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.005000	0.432836	
mm_124163.1	chr14	93685093	93685293	-	1	NA	NA	NA	203695	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.005000	0.363184	-12(CAGTTTTTAAGG,-,0.00)
mm_136331.1	chr16	92399644	92399844	-	1	NA	NA	NA	334	NM_019466	54720	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.030000	0.512438	-31(GTATTTATAGCC,+,0.00)
mm_31441.1	chr4	48585008	48585208	+	1	NA	NA	NA	-85	NM_021436	230157	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0.160000	0.786070	
mm_83350.1	chr9	44342238	44342438	-	1	NA	NA	NA	43	NM_001110251	15288	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	0.005000	0.587065	
mm_160448.1	chr8	105295923	105296123	-	1	NA	NA	NA	75	NM_177788	277978	Mm.40228	NM_177788	ENSMUSG00000043251	Exoc3l	C730015A04Rik|Exoc3l1	exocyst complex component 3-like	protein-coding	0.020000	0.616915	
mm_7526.1	chr1	124208168	124208368	-	1	NA	NA	NA	-162709	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.333333	2(ACTTAAATAGGC,+,0.00)
mm_107216.1	chr12	26445281	26445481	+	1	NA	NA	NA	11071	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.025000	0.452736	
mm_57124.1	chr6	122600047	122600247	-	1	NA	NA	NA	2297	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.005000	0.422886	
mm_15190.1	chr2	154202578	154202778	+	1	NA	NA	NA	2298	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.030000	0.572139	
mm_132818.1	chr16	45223980	45224180	+	1	NA	NA	NA	-257	NM_001037719	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.010000	0.417910	
mm_56407.1	chr6	97179030	97179230	-	1	NA	NA	NA	-6	NM_001081111	232286	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	0.160000	0.771144	
mm_157732.1	chrX	70867447	70867647	-	1	NA	NA	NA	-182709	NM_001256048	333639	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	0.000000	0.363184	
mm_67587.1	chr7	83632374	83632574	-	1	NA	NA	NA	457	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.015000	0.412935	
mm_20947.1	chr2	151632527	151632727	-	1	NA	NA	NA	-34	NM_001291076	241727	Mm.39312	NM_198214	ENSMUSG00000027457	Snph	6430515A01|AW045671|AW556958|AW743098|mKIAA0374	syntaphilin	protein-coding	0.045000	0.616915	
mm_69840.1	chr7	141327585	141327785	-	1	NA	NA	NA	40	NM_016874	54006	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	deformed epidermal autoregulatory factor 1 (Drosophila)	protein-coding	0.145000	0.741294	
mm_129479.1	chr15	78726656	78726856	-	1	NA	NA	NA	-8643	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0.010000	0.562189	
mm_48539.1	chr5	142905041	142905241	-	1	NA	NA	NA	1613	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.020000	0.487562	
mm_19635.1	chr2	102825464	102825664	-	1	NA	NA	NA	76101	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.010000	0.368159	
mm_29401.1	chr3	108905222	108905422	-	1	NA	NA	NA	6382	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.010000	0.353234	-88(TTTTTTAAAGTG,+,0.00)
mm_123976.1	chr14	75176566	75176766	-	1	NA	NA	NA	40241	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.005000	0.492537	
mm_22772.1	chr3	20262325	20262525	+	1	NA	NA	NA	13308	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.025000	0.472637	
mm_3257.1	chr1	136220632	136220832	+	1	NA	NA	NA	-7904	NM_001329610	76422	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	0.005000	0.482587	-35(GTGTTTTAAAAC,-,0.00)
mm_2062.1	chr1	87588684	87588884	+	1	NA	NA	NA	4762	NM_001160165	23956	Mm.143717	NM_015750	ENSMUSG00000079434	Neu2	MBS|MSS|MTS	neuraminidase 2	protein-coding	0.005000	0.522388	-32(GTGTATATAGGC,-,0.00)
mm_6726.1	chr1	82586945	82587145	-	1	NA	NA	NA	124	NM_007734	12828	Mm.389135	NM_007734	ENSMUSG00000079465	Col4a3	[a]3(IV)|alpha3(IV)	collagen, type IV, alpha 3	protein-coding	0.045000	0.626866	
mm_18583.1	chr2	66256511	66256711	-	1	NA	NA	NA	6	NM_001047604	73668	Mm.250868	NM_001047604	ENSMUSG00000034848	Ttc21b	2410066K11Rik|Thm1|aln|mKIAA1992	tetratricopeptide repeat domain 21B	protein-coding	0.080000	0.681592	
mm_153235.1	chr19	35924398	35924598	-	1	NA	NA	NA	132862	NM_001347442	15566	Mm.254266	NM_008315	ENSMUSG00000024798	Htr7	5-HT7	5-hydroxytryptamine (serotonin) receptor 7	protein-coding	0.015000	0.507463	
mm_7635.1	chr1	127854913	127855113	-	1	NA	NA	NA	-13760	NM_178690	226407	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0.020000	0.447761	
mm_137436.1	chr17	26506212	26506412	+	1	NA	NA	NA	2160	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.025000	0.587065	-7(GGGCTTTTAAGG,-,0.00),-5(GCTTTTAAGGTA,+,0.00)
mm_41973.1	chr5	107403501	107403701	+	1	NA	NA	NA	88	NM_001001804	384214	Mm.489863	NM_001001804	ENSMUSG00000033805	Ephx4	Abhd7|Ephxrp|Gm1382	epoxide hydrolase 4	protein-coding	0.135000	0.756219	
mm_80241.1	chr9	72721443	72721643	+	1	NA	NA	NA	59196	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.030000	0.497512	
mm_80164.1	chr9	71215719	71215919	+	1	NA	NA	NA	30	NM_009022	19378	Mm.42016	NM_009022	ENSMUSG00000013584	Aldh1a2	AV116159|Aldh1a7|Raldh1|Raldh2	aldehyde dehydrogenase family 1, subfamily A2	protein-coding	0.135000	0.741294	-36(GCCTATATACAG,+,0.00)
mm_146997.1	chr18	34371876	34372076	-	1	NA	NA	NA	1439	NM_007874	13476	Mm.280075	NM_007874	ENSMUSG00000005873	Reep5	AI324241|AU022809|AW495741|DP1/TB2|Dp1|R74856|TB2/DP1	receptor accessory protein 5	protein-coding	0.015000	0.437811	52(GATTTTAAAAAG,-,0.00),54(TTTTAAAAAGGC,+,0.00)
mm_76495.1	chr8	86580570	86580770	-	1	NA	NA	NA	-14080	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	0.000000	0.567164	-66(CCTTTAATGTGG,+,0.00)
mm_163465.1	chr12	101975785	101975985	-	1	NA	NA	NA	-89	NM_016856	51786	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.095000	0.582090	
mm_36024.1	chr4	57011534	57011734	-	1	NA	NA	NA	-21243	NM_001142965	230235	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	0.010000	0.502488	
mm_137215.1	chr17	24169671	24169871	+	1	NA	NA	NA	-342	NM_009729	11984	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0.065000	0.567164	
mm_163700.1	chr13	103992748	103992948	-	1	NA	NA	NA	-72262	NM_001005868	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.025000	0.407960	
mm_133054.1	chr16	57572241	57572441	+	1	NA	NA	NA	23099	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.005000	0.442786	
mm_136389.1	chr16	93141985	93142185	-	1	NA	NA	NA	211104	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.015000	0.537313	
mm_137444.1	chr17	26514839	26515039	+	1	NA	NA	NA	-6467	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.000000	0.552239	
mm_63811.1	chr7	133747454	133747654	+	1	NA	NA	NA	12715	NM_001286030	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.025000	0.567164	
mm_62731.1	chr7	110806073	110806273	+	1	NA	NA	NA	33569	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.010000	0.492537	
mm_148730.1	chr19	5877780	5877980	+	1	NA	NA	NA	-586	NM_134154	107375	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0.030000	0.492537	-51(GTTTTTAAAGAA,+,0.00)
mm_167416.1	chr8	109493931	109494131	+	1	NA	NA	NA	4	NM_019938	56523	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	0.000000	0.417910	
mm_99609.1	chr11	104580278	104580478	+	1	NA	NA	NA	-18180	NR_130177	100415912	Mm.446786	NR_130177		Gm11665	Gm11664|OTTMUSG00000003182|OTTMUSG00000003183	predicted gene 11665	ncRNA	0.020000	0.532338	
mm_7013.1	chr1	86503968	86504168	-	1	NA	NA	NA	-22668	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.085000	0.691542	
mm_10883.1	chr2	25255363	25255563	+	1	NA	NA	NA	24	NM_177344	227615	Mm.213925	NM_177344	ENSMUSG00000078201	Tmem203	C730025P13Rik|Hbebp1	transmembrane protein 203	protein-coding	0.075000	0.681592	
mm_124119.1	chr14	79526079	79526279	-	1	NA	NA	NA	10505	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.030000	0.492537	
mm_87133.1	chr10	34283775	34283975	+	1	NA	NA	NA	1685	NM_009433	22110	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.005000	0.417910	
mm_134426.1	chr16	17921812	17922012	-	1	NA	NA	NA	6307	NM_153150	13358	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0.090000	0.636816	
mm_49128.1	chr6	8550273	8550473	+	1	NA	NA	NA	30315	NM_001286729	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.010000	0.343284	
mm_22228.1	chr2	174429004	174429204	-	1	NA	NA	NA	9935	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.020000	0.527363	
mm_106446.1	chr11	119917094	119917294	-	1	NA	NA	NA	3384	NM_001085498	208092	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.045000	0.597015	
mm_163184.1	chr11	93995737	93995937	-	1	NA	NA	NA	-254	NM_001199203	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.085000	0.626866	
mm_144103.1	chr18	3507887	3508087	+	1	NA	NA	NA	30	NM_026505	68010	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	0.130000	0.701493	
mm_149631.1	chr19	17222481	17222681	+	1	NA	NA	NA	116924	NM_001136484	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.020000	0.422886	
mm_24763.1	chr3	95499161	95499361	+	1	NA	NA	NA	51	NM_007802	13038	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.030000	0.472637	
mm_84446.1	chr9	66300767	66300967	-	1	NA	NA	NA	-49583	NM_145617	235439	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.005000	0.482587	
mm_41806.1	chr5	103754124	103754324	+	1	NA	NA	NA	62	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.145000	0.736318	
mm_53943.1	chr6	5182686	5182886	-	1	NA	NA	NA	11160	NM_011134	18979	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.000000	0.373134	
mm_8254.1	chr1	138842371	138842571	-	1	NA	NA	NA	-27	NM_001042577	16876	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0.030000	0.507463	
mm_156040.1	chrX	107816410	107816610	+	1	NA	NA	NA	33	NM_001163104	213449	Mm.444635	NM_001163104	ENSMUSG00000073007	Fam46d	Gm377	family with sequence similarity 46, member D	protein-coding	0.060000	0.562189	
mm_160072.1	chr7	6501991	6502191	-	1	NA	NA	NA	133	NM_146913	258915	Mm.223321	NM_146913	ENSMUSG00000093877	Olfr1348	MOR103-9	olfactory receptor 1348	protein-coding	0.000000	0.497512	
mm_133803.1	chr16	95298709	95298909	+	1	NA	NA	NA	41251	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.000000	0.512438	
mm_1511.1	chr1	72459361	72459561	+	1	NA	NA	NA	77103	NM_001045533	381270	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	0.010000	0.462687	
mm_86473.1	chr10	4611852	4612052	+	1	NA	NA	NA	-37	NM_001302532	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.025000	0.507463	
mm_62921.1	chr7	118592395	118592595	+	1	NA	NA	NA	49	NM_001331203	381914	Mm.291232	NM_001331201	ENSMUSG00000109284	B230311B06Rik	Gm1695	RIKEN cDNA B230311B06 gene	protein-coding	0.015000	0.542289	
mm_18155.1	chr2	45091251	45091451	-	1	NA	NA	NA	18926	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.000000	0.537313	
mm_85438.1	chr9	104102253	104102453	-	1	NA	NA	NA	24290	NM_145700	252837	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	0.025000	0.482587	
mm_24520.1	chr3	92944385	92944585	+	1	NA	NA	NA	-1	NM_033175	94060	Mm.301748	NM_033175	ENSMUSG00000045475	Lce3c	2300007B01Rik|AV076207|Eig3|Sprrl1	late cornified envelope 3C	protein-coding	0.000000	0.502488	
mm_143887.1	chr17	84354913	84355113	-	1	NA	NA	NA	111195	NM_183021	240174	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.005000	0.547264	
mm_24303.1	chr3	89391747	89391947	+	1	NA	NA	NA	-17	NR_040403	545539	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	ENSMUSG00000074466|OTTMUSG00000021274	predicted gene 15417	ncRNA	0.060000	0.696517	
mm_119398.1	chr14	41151432	41151632	+	1	NA	NA	NA	76	NM_010775	17194	Mm.281805	NM_010775	ENSMUSG00000037780	Mbl1	MBL-A|MBP-A|S-MBP	mannose-binding lectin (protein A) 1	protein-coding	0.015000	0.532338	
mm_2127.1	chr1	88025050	88025250	+	1	NA	NA	NA	-16599	NM_001033291	227334	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	0.005000	0.383085	
mm_92162.1	chr10	67547682	67547882	-	1	NA	NA	NA	1173	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.040000	0.567164	
mm_151964.1	chr19	5801624	5801824	-	1	NA	NA	NA	948	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.010000	0.368159	
mm_111505.1	chr12	99457807	99458007	-	1	NA	NA	NA	-7833	NM_183186	71375	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.030000	0.452736	
mm_58876.1	chr7	16986944	16987144	+	1	NA	NA	NA	-7544	NM_001101535	434130	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	ENSMUSG00000041117	coiled-coil domain containing 8	protein-coding	0.005000	0.502488	
mm_44954.1	chr5	36695917	36696117	-	1	NA	NA	NA	4	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.160000	0.766169	
mm_89568.1	chr10	95418585	95418785	+	1	NA	NA	NA	1310	NR_045338	70523	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	0.000000	0.383085	
mm_54619.1	chr6	38433626	38433826	-	1	NA	NA	NA	-199	NM_177185	320538	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	0.095000	0.636816	
mm_123387.1	chr14	63349425	63349625	-	1	NA	NA	NA	67662	NM_007549	12143	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.005000	0.507463	
mm_87895.1	chr10	62071180	62071380	+	1	NA	NA	NA	39733	NM_027251	69894	Mm.294126	NM_027251	ENSMUSG00000020083	2010107G23Rik	AA545165	RIKEN cDNA 2010107G23 gene	protein-coding	0.025000	0.527363	
mm_158432.1	chrX	139871554	139871754	-	1	NA	NA	NA	0	NM_029413	75746	Mm.23269	NM_029413	ENSMUSG00000031434	Morc4	1600017G11Rik|5630401M14Rik|AA117449|Zcwcc2	microrchidia 4	protein-coding	0.075000	0.661692	
mm_103467.1	chr11	76468380	76468580	-	1	NA	NA	NA	-15	NM_001291186	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.020000	0.616915	
mm_101394.1	chr11	26387324	26387524	-	1	NA	NA	NA	340	NR_102382	67030	Mm.18875	NM_025923	ENSMUSG00000004018	Fancl	2010322C19Rik|AW554273|B230118H11Rik|Phf9|Pog|gcd	Fanconi anemia, complementation group L	protein-coding	0.120000	0.691542	
mm_87845.1	chr10	60892196	60892396	+	1	NA	NA	NA	-30727	NR_105835	102466158		NR_105835	ENSMUSG00000099279	Mir6408	Gm27451|mmu-mir-6408	microRNA 6408	ncRNA	0.025000	0.547264	
mm_140154.1	chr17	80127701	80127901	+	1	NA	NA	NA	330	NM_176963	319625	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.035000	0.567164	
mm_64755.1	chr7	4843730	4843930	-	1	NA	NA	NA	866	NM_001290291	232813	Mm.44666	NM_172737	ENSMUSG00000053550	Shisa7	ckamp59	shisa family member 7	protein-coding	0.030000	0.572139	
mm_149052.1	chr19	8837599	8837799	+	1	NA	NA	NA	232	NM_001136064	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.085000	0.547264	
mm_58628.1	chr7	5081825	5082025	+	1	NA	NA	NA	1690	NM_001252454	13854	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0.000000	0.452736	
mm_4431.1	chr1	172506517	172506717	+	1	NA	NA	NA	6371	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.035000	0.557214	
mm_80318.1	chr9	74866382	74866582	+	1	NA	NA	NA	4561	NM_008262	15379	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	0.030000	0.572139	
mm_123108.1	chr14	55884130	55884330	-	1	NA	NA	NA	26	NM_019820	56410	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0.010000	0.597015	
mm_126269.1	chr15	79124400	79124600	+	1	NA	NA	NA	15517	NM_177461	27008	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	0.020000	0.621891	
mm_23980.1	chr3	86017138	86017338	+	1	NA	NA	NA	-14747	NM_001001650	368202	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding	0.000000	0.323383	
mm_121819.1	chr14	20452129	20452329	-	1	NA	NA	NA	-4	NM_001163639	76670	Mm.159759	NM_029698	ENSMUSG00000039543	Cfap70	Ttc18	cilia and flagella associated protein 70	protein-coding	0.020000	0.492537	43(CCTTTTAGGGGC,+,0.00)
mm_131657.1	chr16	20540615	20540815	+	1	NA	NA	NA	5235	NM_009679	11773	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.020000	0.522388	
mm_15891.1	chr2	164879953	164880153	+	1	NA	NA	NA	685	NM_146129	228866	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	0.065000	0.527363	
mm_171078.1	chr3	121249838	121250038	-	1	NA	NA	NA	13378	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0.025000	0.462687	
mm_37221.1	chr4	117915096	117915296	-	1	NA	NA	NA	-197	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	0.100000	0.651741	
mm_109638.1	chr12	112794182	112794382	+	1	NA	NA	NA	-14693	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.020000	0.577114	
mm_136761.1	chr17	8801561	8801761	+	1	NA	NA	NA	-84	NM_011866	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.085000	0.716418	
mm_83126.1	chr9	40423546	40423746	-	1	NA	NA	NA	32118	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.015000	0.502488	
mm_66309.1	chr7	39517874	39518074	-	1	NA	NA	NA	208	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.100000	0.716418	
mm_116100.1	chr13	28884179	28884379	-	1	NA	NA	NA	1143	NR_045054	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.065000	0.577114	
mm_122526.1	chr14	47380156	47380356	-	1	NA	NA	NA	6396	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.005000	0.676617	
mm_142960.1	chr17	56120576	56120776	-	1	NA	NA	NA	1270	NM_029796	76905	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0.095000	0.696517	
mm_14048.1	chr2	122313698	122313898	+	1	NA	NA	NA	-68	NM_001305262	213696	Mm.247121	NM_145395	ENSMUSG00000027224	Duoxa1	BC019755|Nip|Nip1	dual oxidase maturation factor 1	protein-coding	0.080000	0.681592	
mm_36089.1	chr4	58458836	58459036	-	1	NA	NA	NA	-17838	NR_037278	100526502		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0.000000	0.343284	-89(TCTTTTATATAG,+,0.00)
mm_102334.1	chr11	57829220	57829420	-	1	NA	NA	NA	2827	NM_008213	15110	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed transcript 1	protein-coding	0.050000	0.502488	
mm_113052.1	chr13	23684100	23684300	+	1	NA	NA	NA	1	NM_023422	68024	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	0.045000	0.522388	
mm_149408.1	chr19	11404653	11404853	+	1	NA	NA	NA	-2908	NM_029499	64380	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	0.010000	0.383085	
mm_36559.1	chr4	87161524	87161724	-	1	NA	NA	NA	66339	NM_001110240	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	0.015000	0.417910	
mm_56942.1	chr6	119948419	119948619	-	1	NA	NA	NA	45821	NM_001166381	19365	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.000000	0.472637	
mm_71119.1	chr8	36168861	36169061	+	1	NA	NA	NA	74133	NM_172911	244418	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.005000	0.442786	23(CCCTTTTAAAAG,-,0.00),24(CCTTTTAAAAGC,+,0.00),24(CCTTTTAAAAGC,-,0.00),25(CTTTTAAAAGCC,+,0.00)
mm_5755.1	chr1	46853800	46854000	-	1	NA	NA	NA	-391	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.090000	0.606965	
mm_45331.1	chr5	65537056	65537256	-	1	NA	NA	NA	-89	NM_016786	53323	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.150000	0.800995	
mm_27770.1	chr3	72904343	72904543	-	1	NA	NA	NA	62423	NM_001081137	69983	Mm.261054	NM_001081137	ENSMUSG00000027790	Sis	2010204N08Rik|SI|Si-s	sucrase isomaltase (alpha-glucosidase)	protein-coding	0.005000	0.323383	14(GCTTTTATGGTG,+,0.00)
mm_154499.1	chrM	11609	11809	-	1	NA	NA	NA	NA	NA									0.000000	0.313433	27(TCCTATAAAAGT,-,0.00)
mm_80613.1	chr9	88327507	88327707	+	1	NA	NA	NA	-2	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	0.085000	0.701493	
mm_106161.1	chr11	116626856	116627056	-	1	NA	NA	NA	63	NM_172572	217344	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.030000	0.606965	
mm_84949.1	chr9	83146404	83146604	-	1	NA	NA	NA	103	NM_175074	94353	Mm.244426	NM_026122	ENSMUSG00000066456	Hmgn3	1110002A15Rik|6330514M13Rik|BB071015|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding	0.060000	0.582090	
mm_67176.1	chr7	73596160	73596360	-	1	NA	NA	NA	-37865	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.000000	0.393035	
mm_20536.1	chr2	131041416	131041616	-	1	NA	NA	NA	-1118	NR_105969	102465606		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	0.160000	0.766169	
mm_29345.1	chr3	108284442	108284642	-	1	NA	NA	NA	478	NM_019972	20661	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0.160000	0.796020	
mm_38679.1	chr4	144998235	144998435	-	1	NA	NA	NA	105198	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.005000	0.512438	
mm_152206.1	chr19	7711141	7711341	-	1	NA	NA	NA	69	NM_144785	207151	Mm.21365	NM_144785	ENSMUSG00000024757	Slc22a19	D630043A20Rik|OAT-5|Oat5|Slc22a9	solute carrier family 22 (organic anion transporter), member 19	protein-coding	0.000000	0.422886	
mm_69318.1	chr7	128461257	128461457	-	1	NA	NA	NA	156	NM_009383	21843	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.080000	0.691542	
mm_107239.1	chr12	26478763	26478963	+	1	NA	NA	NA	9648	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.045000	0.432836	
mm_33828.1	chr4	135578637	135578837	+	1	NA	NA	NA	-5117	NM_001013756	230824	Mm.331972	NM_001013756	ENSMUSG00000037188	Grhl3	AI561912|Get1|Som|Tfcp2l4|ct	grainyhead-like 3 (Drosophila)	protein-coding	0.015000	0.547264	
mm_64007.1	chr7	140203630	140203830	+	1	NA	NA	NA	-962	NM_001011814	258055	Mm.377339	NM_001011814	ENSMUSG00000050366	Olfr524	MOR103-14P	olfactory receptor 524	protein-coding	0.005000	0.537313	
mm_172489.1	chr7	53890102	53890302	+	1	NA	NA	NA	1687	NR_105746	102466619		NR_105746	ENSMUSG00000099176	Mir6238	Gm27982|mmu-mir-6238	microRNA 6238	ncRNA	0.050000	0.522388	
mm_154422.1	chrM	182	382	-	1	NA	NA	NA	NA	NA									0.045000	0.398010	
mm_82197.1	chr9	124022017	124022217	+	1	NA	NA	NA	146	NM_009914	12771	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.005000	0.348259	-75(GCCTTTTTAAAA,-,0.00)
mm_169424.1	chr14	53318670	53318870	+	1	NA	NA	NA	-823075	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.015000	0.422886	
mm_72082.1	chr8	71570675	71570875	+	1	NA	NA	NA	1848	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.095000	0.656716	
mm_105609.1	chr11	106782844	106783044	-	1	NA	NA	NA	-185	NR_037224	100526469		NR_037224	ENSMUSG00000093273	Mir3064	mir-3064|mmu-mir-3064	microRNA 3064	ncRNA	0.000000	0.412935	
mm_147738.1	chr18	61107573	61107773	-	1	NA	NA	NA	2101	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.035000	0.547264	
mm_30921.1	chr4	32722910	32723110	+	1	NA	NA	NA	65891	NM_001081392	100019	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	0.015000	0.527363	
mm_9538.1	chr1	173875761	173875961	-	1	NA	NA	NA	4326	NM_001170853	100040462	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	0.005000	0.288557	47(TCTTCTAAAAGG,-,0.00)
mm_107396.1	chr12	33315396	33315596	+	1	NA	NA	NA	12981	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.025000	0.557214	
mm_92477.1	chr10	78234638	78234838	-	1	NA	NA	NA	9904	NM_001081055	216131	Mm.27539	NM_001081055	ENSMUSG00000000374	Trappc10	B230307C21Rik|Gm870|Tmem1	trafficking protein particle complex 10	protein-coding	0.010000	0.368159	
mm_81118.1	chr9	106460554	106460754	+	1	NA	NA	NA	5286	NM_001159652	436090	Mm.482905	NM_001159652	ENSMUSG00000091735	Gpr62	4933402E03Rik	G protein-coupled receptor 62	protein-coding	0.045000	0.636816	
mm_125257.1	chr15	35329082	35329282	+	1	NA	NA	NA	-647	NR_045280	100126269	Mm.247402	NR_045280		BC048602	-	cDNA sequence BC048602	ncRNA	0.025000	0.552239	
mm_135803.1	chr16	57265407	57265607	-	1	NA	NA	NA	27344	NM_027651	71027	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	0.030000	0.547264	
mm_153597.1	chr19	43751607	43751807	-	1	NA	NA	NA	1293	NM_144874	226139	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	0.020000	0.497512	-34(TAGTATAAATGG,-,0.00)
mm_154046.1	chr19	55076113	55076313	-	1	NA	NA	NA	23234	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.000000	0.318408	
mm_25514.1	chr3	113162462	113162662	+	1	NA	NA	NA	-5835	NM_001190403	545562	Mm.462977	NM_001190403		Amy2b	Amy-X|Amy2-2|OTTMUSG00000022462|mAmy2-1	amylase 2b	protein-coding	0.020000	0.358209	
mm_80530.1	chr9	80164969	80165169	+	1	NA	NA	NA	35	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.125000	0.716418	
mm_56272.1	chr6	91023984	91024184	-	1	NA	NA	NA	92742	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.015000	0.452736	-54(ATTTTTAGAGCC,+,0.00)
mm_42416.1	chr5	115279595	115279795	+	1	NA	NA	NA	-7	NM_026504	52064	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	0.130000	0.691542	
mm_110896.1	chr12	75599233	75599433	-	1	NA	NA	NA	-3133	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.015000	0.457711	
mm_44164.1	chr5	150684209	150684409	+	1	NA	NA	NA	10482	NM_001346503	100710	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	0.000000	0.343284	
mm_31439.1	chr4	48540296	48540496	+	1	NA	NA	NA	-103	NM_028137	66665	Mm.140749	NM_028137	ENSMUSG00000039693	Msantd3	2410046L14Rik|2810429P03Rik|5730528L13Rik|Mysantd3	Myb/SANT-like DNA-binding domain containing 3	protein-coding	0.190000	0.875622	
mm_11475.1	chr2	32384574	32384774	+	1	NA	NA	NA	-2759	NM_198001	73737	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0.005000	0.512438	
mm_88261.1	chr10	73821866	73822066	+	1	NA	NA	NA	99	NM_001142735	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0.035000	0.512438	
mm_44130.1	chr5	149678175	149678375	+	1	NA	NA	NA	18	NM_001081204	381694	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	0.150000	0.776119	
mm_152293.1	chr19	9003418	9003618	-	1	NA	NA	NA	14234	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.000000	0.467662	
mm_104601.1	chr11	97161908	97162108	-	1	NA	NA	NA	-12296	NM_198100	73174	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0.020000	0.383085	
mm_18630.1	chr2	69237358	69237558	-	1	NA	NA	NA	17509	NM_001289857	14378	Mm.140768	NM_021331	ENSMUSG00000005232	G6pc2	G6pc-rs|IGRP	glucose-6-phosphatase, catalytic, 2	protein-coding	0.000000	0.318408	
mm_8210.1	chr1	138136386	138136586	-	1	NA	NA	NA	38640	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.035000	0.477612	-88(TCCTATAAAGAC,+,0.00),-88(TCCTATAAAGAC,-,0.00)
mm_31714.1	chr4	62634305	62634505	+	1	NA	NA	NA	14733	NM_134257	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.045000	0.626866	
mm_96015.1	chr11	59542864	59543064	+	1	NA	NA	NA	278	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.005000	0.383085	51(CTTTTAATACCA,+,0.00)
mm_95209.1	chr11	43598480	43598680	+	1	NA	NA	NA	2982	NM_008375	16204	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0.000000	0.522388	
mm_144279.1	chr18	11787094	11787294	+	1	NA	NA	NA	-52080	NM_022021	63955	Mm.40717	NM_022021	ENSMUSG00000040957	Cables1	Cables|ik3-1	CDK5 and Abl enzyme substrate 1	protein-coding	0.000000	0.313433	
mm_89680.1	chr10	97517519	97517719	+	1	NA	NA	NA	35288	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.030000	0.447761	
mm_15690.1	chr2	163658432	163658632	+	1	NA	NA	NA	74	NM_001164053	18769	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.155000	0.766169	
mm_114671.1	chr13	80158564	80158764	+	1	NA	NA	NA	-724758	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.010000	0.373134	
mm_39530.1	chr5	21308342	21308542	+	1	NA	NA	NA	-64231	NM_008013	14190	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.005000	0.278607	
mm_146424.1	chr18	84848847	84849047	+	1	NA	NA	NA	-2467	NM_025797	109672	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.000000	0.482587	
mm_15058.1	chr2	152931842	152932042	+	1	NA	NA	NA	1266	NM_010226	14239	Mm.205798	NM_010226	ENSMUSG00000074676	Foxs1	FREAC10|Fkh3|Fkhl18	forkhead box S1	protein-coding	0.015000	0.562189	
mm_23988.1	chr3	86224121	86224321	+	1	NA	NA	NA	-469	NM_001077688	80877	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	0.170000	0.756219	
mm_80932.1	chr9	102626484	102626684	+	1	NA	NA	NA	288	NM_181394	69010	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	0.070000	0.587065	
mm_72791.1	chr8	86895033	86895233	+	1	NA	NA	NA	-9875	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.005000	0.437811	
mm_59725.1	chr7	28788131	28788331	+	1	NA	NA	NA	-738	NM_177158	320435	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0.010000	0.512438	
mm_123724.1	chr14	70153609	70153809	-	1	NA	NA	NA	82	NM_146055	219158	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	0.060000	0.666667	
mm_32068.1	chr4	97777833	97778033	+	1	NA	NA	NA	307	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.075000	0.646766	
mm_37402.1	chr4	121214993	121215193	-	1	NA	NA	NA	-9	NM_001346660	109263	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	0.125000	0.726368	
mm_53584.1	chr6	137464353	137464553	+	1	NA	NA	NA	53732	NM_001164403	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.025000	0.547264	
mm_76913.1	chr8	105932499	105932699	-	1	NA	NA	NA	1263	NM_023182	109660	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.030000	0.587065	
mm_45259.1	chr5	63953544	63953744	-	1	NA	NA	NA	15253	NM_145923	100532	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0.030000	0.572139	
mm_72464.1	chr8	83290547	83290747	+	1	NA	NA	NA	299	NM_009463	22227	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	0.030000	0.547264	
mm_106033.1	chr11	116077519	116077719	-	1	NA	NA	NA	342	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.035000	0.656716	
mm_137342.1	chr17	25136562	25136762	+	1	NA	NA	NA	31	NM_001317404	26373	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.010000	0.522388	16(GTCTTTAAATGC,-,0.00)
mm_376.1	chr1	34011163	34011363	+	1	NA	NA	NA	-562	NM_133833	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.035000	0.671642	
mm_155294.1	chrX	61183825	61184025	+	1	NA	NA	NA	1633	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.010000	0.388060	
mm_112599.1	chr13	14142884	14143084	+	1	NA	NA	NA	79200	NM_198122	94246	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.005000	0.393035	
mm_147296.1	chr18	39514058	39514258	-	1	NA	NA	NA	-26913	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.005000	0.393035	
mm_108909.1	chr12	100206057	100206257	+	1	NA	NA	NA	6013	NM_001313934	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.030000	0.457711	
mm_171509.1	chr4	146286897	146287097	+	1	NA	NA	NA	16612	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.010000	0.467662	
mm_56737.1	chr6	115758929	115759129	-	1	NA	NA	NA	-30	NM_144805	94346	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0.025000	0.631841	
mm_84235.1	chr9	62122560	62122760	-	1	NA	NA	NA	-66	NR_039595	100628602		NR_039595	ENSMUSG00000092696	Mir5133	mir-5133|mmu-mir-5133|mu-mir-5133	microRNA 5133	ncRNA	0.130000	0.736318	
mm_123379.1	chr14	63271567	63271767	-	1	NA	NA	NA	-26396	NM_001310610	14463	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0.020000	0.522388	
mm_88119.1	chr10	69219237	69219437	+	1	NA	NA	NA	6143	NM_001252638	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.005000	0.442786	
mm_140560.1	chr17	7987138	7987338	-	1	NA	NA	NA	41624	NM_025789	66832	Mm.29830	NM_025789	ENSMUSG00000073471	Rsph3a	1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a	radial spoke 3A homolog (Chlamydomonas)	protein-coding	0.025000	0.582090	
mm_21195.1	chr2	155442980	155443180	-	1	NA	NA	NA	-2297	NM_019825	56406	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	0.005000	0.358209	
mm_41667.1	chr5	99336680	99336880	+	1	NA	NA	NA	-83853	NM_145839	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.030000	0.492537	
mm_70527.1	chr8	12997073	12997273	+	1	NA	NA	NA	-28861	NM_010172	14068	Mm.4827	NM_010172	ENSMUSG00000031443	F7	AI132620|Cf7|FVII	coagulation factor VII	protein-coding	0.025000	0.562189	
mm_82381.1	chr9	14643433	14643633	-	1	NA	NA	NA	-28533	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.015000	0.522388	
mm_34257.1	chr4	141398734	141398934	+	1	NA	NA	NA	-128	NM_024412	12733	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	0.040000	0.592040	
mm_139978.1	chr17	71782510	71782710	+	1	NA	NA	NA	663	NM_030179	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	0.150000	0.791045	
mm_162903.1	chr10	115817084	115817284	+	1	NA	NA	NA	-100	NM_001168680	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	0.020000	0.562189	
mm_83939.1	chr9	56795695	56795895	-	1	NA	NA	NA	56168	NM_198673	382075	Mm.335177	NM_198673	ENSMUSG00000045620	Odf3l1	BC049697|Gm1116	outer dense fiber of sperm tails 3-like 1	protein-coding	0.090000	0.671642	
mm_99398.1	chr11	102189593	102189793	+	1	NA	NA	NA	-6	NM_175935	68401	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	0.080000	0.661692	
mm_108167.1	chr12	76403817	76404017	+	1	NA	NA	NA	-259	NM_001002012	15512	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0.110000	0.681592	
mm_62781.1	chr7	112427617	112427817	+	1	NA	NA	NA	11	NM_020606	57342	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding	0.040000	0.631841	
mm_122334.1	chr14	37121541	37121741	-	1	NA	NA	NA	-11540	NM_001206684	70045	Mm.271619	NM_001206684	ENSMUSG00000096001	2610528A11Rik	AW494830	RIKEN cDNA 2610528A11 gene	protein-coding	0.005000	0.472637	
mm_159146.1	chr2	87191506	87191706	+	1	NA	NA	NA	-83	NM_146661	258655	Mm.377618	NM_146661	ENSMUSG00000044487	Olfr1112	MOR264-6	olfactory receptor 1112	protein-coding	0.000000	0.303483	
mm_95755.1	chr11	54902825	54903025	+	1	NA	NA	NA	71	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.075000	0.641791	
mm_127113.1	chr15	97964192	97964392	+	1	NA	NA	NA	63	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.150000	0.751244	
mm_33202.1	chr4	126296073	126296273	+	1	NA	NA	NA	9379	NM_199473	329941	Mm.296327	NM_199473	ENSMUSG00000056174	Col8a2	AI429819	collagen, type VIII, alpha 2	protein-coding	0.005000	0.398010	71(TCCTTTTAATGG,-,0.00),73(CTTTTAATGGTG,+,0.00)
mm_89521.1	chr10	94356907	94357107	+	1	NA	NA	NA	-58304	NR_033209	215472	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	0.040000	0.472637	
mm_132411.1	chr16	35025557	35025757	+	1	NA	NA	NA	3236	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.015000	0.492537	
mm_56998.1	chr6	121002943	121003143	-	1	NA	NA	NA	44199	NR_138099	215458	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	0.005000	0.582090	
mm_111041.1	chr12	79249664	79249864	-	1	NA	NA	NA	40851	NM_030017	77974	Mm.274373	NM_030017	ENSMUSG00000021123	Rdh12	-	retinol dehydrogenase 12	protein-coding	0.035000	0.547264	
mm_106766.1	chr12	4592823	4593023	+	1	NA	NA	NA	-85	NM_001198969	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.130000	0.746269	
mm_41988.1	chr5	107725064	107725264	+	1	NA	NA	NA	641	NM_001267621	14581	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.045000	0.567164	-32(CCACTTAAAAGG,-,0.00)
mm_164237.1	chr15	91641876	91642076	+	1	NA	NA	NA	-31248	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.005000	0.487562	
mm_19398.1	chr2	91635707	91635907	-	1	NA	NA	NA	650	NM_010168	14061	Mm.89048	NM_010168	ENSMUSG00000027249	F2	Cf-2|Cf2|FII	coagulation factor II	protein-coding	0.025000	0.601990	
mm_65892.1	chr7	30072798	30072998	-	1	NA	NA	NA	-75	NM_001253385	330502	Mm.295906	NM_177889	ENSMUSG00000098022	Zfp82	A030010D05|Krab16|Mszf3|Zfp-82	zinc finger protein 82	protein-coding	0.075000	0.671642	
mm_107476.1	chr12	37880571	37880771	+	1	NA	NA	NA	-34	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	0.025000	0.552239	
mm_43118.1	chr5	124637395	124637595	+	1	NA	NA	NA	8443	NM_011596	21871	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0.020000	0.572139	
mm_144963.1	chr18	37821435	37821635	+	1	NA	NA	NA	1989	NM_033583	93708	Mm.247203	NM_033583	ENSMUSG00000102543	Pcdhgc5	-	protocadherin gamma subfamily C, 5	protein-coding	0.025000	0.562189	
mm_13434.1	chr2	105126215	105126415	+	1	NA	NA	NA	195	NR_015462	329480	Mm.246679	NR_015462	ENSMUSG00000074987	Wt1os	6030498F17|AI314831|Wt1-as	Wilms tumor 1 homolog, opposite strand	ncRNA	0.050000	0.636816	
mm_55420.1	chr6	65127898	65128098	-	1	NA	NA	NA	16732	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.015000	0.437811	-88(GCCTATATATGA,-,0.00)
mm_47756.1	chr5	131307347	131307547	-	1	NA	NA	NA	75	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.095000	0.651741	
mm_100052.1	chr11	115179934	115180134	+	1	NA	NA	NA	7282	NM_025400	66176	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	0.025000	0.601990	
mm_16302.1	chr2	174289529	174289729	+	1	NA	NA	NA	5309	NM_022000	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.015000	0.452736	-89(CTTTTTATATGC,+,0.00)
mm_100148.1	chr11	116030245	116030445	+	1	NA	NA	NA	29	NM_172569	217331	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0.115000	0.681592	
mm_76242.1	chr8	83583317	83583517	-	1	NA	NA	NA	11074	NM_027179	106529	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	0.055000	0.577114	
mm_28958.1	chr3	100665124	100665324	-	1	NA	NA	NA	20249	NM_010763	17156	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0.005000	0.417910	
mm_172424.1	chr7	28174421	28174621	+	1	NA	NA	NA	4773	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.035000	0.582090	
mm_91984.1	chr10	61783916	61784116	-	1	NA	NA	NA	-152	NM_207000	404634	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	0.065000	0.651741	
mm_11216.1	chr2	29643648	29643848	+	1	NA	NA	NA	24028	NM_001039086	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.005000	0.542289	
mm_100443.1	chr11	119486408	119486608	+	1	NA	NA	NA	-4839	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.005000	0.368159	
mm_6828.1	chr1	84203001	84203201	-	1	NA	NA	NA	15860	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.313433	81(GCATTTATAGTT,+,0.00)
mm_93939.1	chr10	127189926	127190126	-	1	NA	NA	NA	28	NM_028027	52666	Mm.272230	NM_028027	ENSMUSG00000019467	Arhgef25	2410008H17Rik|D10Ertd610e|GEFT	Rho guanine nucleotide exchange factor (GEF) 25	protein-coding	0.070000	0.701493	
mm_12966.1	chr2	90679291	90679491	+	1	NA	NA	NA	2176	NM_021512	59015	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.120000	0.661692	
mm_109199.1	chr12	108648305	108648505	+	1	NA	NA	NA	-10215	NR_029771	723909		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.035000	0.562189	
mm_120449.1	chr14	65968505	65968705	+	1	NA	NA	NA	122	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.055000	0.621891	6(CGCTATAAATAG,-,0.00)
mm_146964.1	chr18	33438529	33438729	-	1	NA	NA	NA	25005	NM_001267717	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.005000	0.358209	
mm_105085.1	chr11	100848058	100848258	-	1	NA	NA	NA	2427	NM_001113563	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.015000	0.452736	
mm_155305.1	chrX	61185902	61186102	+	1	NA	NA	NA	-444	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.010000	0.437811	
mm_35553.1	chr4	41517212	41517412	-	1	NA	NA	NA	21	NM_001048005	73721	Mm.45614	NM_028624	ENSMUSG00000028441	1110017D15Rik	Cbe1|Smrp1	RIKEN cDNA 1110017D15 gene	protein-coding	0.005000	0.547264	64(GGCTATTTAGGG,-,0.00)
mm_66448.1	chr7	44868583	44868783	-	1	NA	NA	NA	1105	NM_133949	84113	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0.055000	0.572139	
mm_84257.1	chr9	62536701	62536901	-	1	NA	NA	NA	243	NM_175484	235431	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.140000	0.751244	
mm_15174.1	chr2	154130271	154130471	+	1	NA	NA	NA	35	NM_028528	73388	Mm.71904	NM_028528	ENSMUSG00000027482	Bpifa3	1700058C13Rik|Splunc3	BPI fold containing family A, member 3	protein-coding	0.005000	0.567164	
mm_41617.1	chr5	96824809	96825009	+	1	NA	NA	NA	31524	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.040000	0.497512	
mm_87001.1	chr10	26797847	26798047	+	1	NA	NA	NA	25435	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.010000	0.427861	-83(GCTTTTAGACAA,+,0.00),-36(GTTTTTAGAGGA,+,0.00)
mm_47654.1	chr5	125392851	125393051	-	1	NA	NA	NA	-2934	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.005000	0.512438	
mm_105832.1	chr11	113444603	113444803	-	1	NA	NA	NA	121112	NM_001166503	69806	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0.040000	0.527363	
mm_42460.1	chr5	115436549	115436749	+	1	NA	NA	NA	6964	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.085000	0.681592	
mm_110257.1	chr12	31654704	31654904	-	1	NA	NA	NA	22	NM_028002	71916	Mm.62979	NM_028002	ENSMUSG00000020648	Dus4l	2310069P03Rik|2700089B10Rik|AI482040|Pp35	dihydrouridine synthase 4-like (S. cerevisiae)	protein-coding	0.090000	0.631841	
mm_167278.1	chr8	35209032	35209232	-	1	NA	NA	NA	-166609	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.015000	0.457711	
mm_63287.1	chr7	126795168	126795368	+	1	NA	NA	NA	-2797	NM_019674	56420	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|Ppx	protein phosphatase 4, catalytic subunit	protein-coding	0.010000	0.497512	-32(CCCCTTAAATAG,-,0.00),-30(CCTTAAATAGTT,+,0.00)
mm_98939.1	chr11	98371880	98372080	+	1	NA	NA	NA	-11831	NM_011540	21393	Mm.10762	NM_011540	ENSMUSG00000007877	Tcap	AI503981|AJ223855	titin-cap	protein-coding	0.005000	0.601990	
mm_166914.1	chr7	30394275	30394475	-	1	NA	NA	NA	-19413	NM_011662	22177	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0.015000	0.467662	
mm_94314.1	chr11	4223601	4223801	+	1	NA	NA	NA	5450	NM_028022	71962	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik	GATS protein-like 3	protein-coding	0.015000	0.592040	-88(CCCTAGAAAAGC,-,0.00)
mm_80597.1	chr9	86467067	86467267	+	1	NA	NA	NA	13	NM_177208	320615	Mm.245500	NM_177208	ENSMUSG00000034973	Dopey1	B130005I07Rik|BC035275|C130028L17|D9Ertd809e	dopey family member 1	protein-coding	0.180000	0.786070	
mm_108349.1	chr12	80480179	80480379	+	1	NA	NA	NA	17184	NM_133798	97827	Mm.206631	NM_133798	ENSMUSG00000032705	Exd2	4930539P14Rik|C85658|Exdl2	exonuclease 3'-5' domain containing 2	protein-coding	0.015000	0.427861	-96(CTATTTATAGAC,+,0.00),-33(TGCTTTATAAGA,-,0.00)
mm_24838.1	chr3	95659568	95659768	+	1	NA	NA	NA	947	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.045000	0.592040	
mm_16805.1	chr2	10126144	10126344	-	1	NA	NA	NA	4439	NM_010582	16425	Mm.182043	NM_010582	ENSMUSG00000037254	Itih2	AI747202|Intin2|Itih-2	inter-alpha trypsin inhibitor, heavy chain 2	protein-coding	0.015000	0.452736	-57(CTCTTTATAGCT,+,0.00)
mm_90506.1	chr10	128039377	128039577	+	1	NA	NA	NA	4131	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.020000	0.582090	
mm_70323.1	chr8	4253033	4253233	+	1	NA	NA	NA	31	NM_133968	102209	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	0.085000	0.646766	
mm_49198.1	chr6	15196995	15197195	+	1	NA	NA	NA	11589	NM_001286607	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.000000	0.452736	
mm_43124.1	chr5	125071480	125071680	+	1	NA	NA	NA	68105	NM_028443	73121	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.020000	0.527363	-78(CCTCATTAAAGG,-,0.00)
mm_38286.1	chr4	136890235	136890435	-	1	NA	NA	NA	2579	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.045000	0.577114	
mm_50486.1	chr6	48988477	48988677	+	1	NA	NA	NA	1716	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.015000	0.512438	
mm_106272.1	chr11	117987123	117987323	-	1	NA	NA	NA	366	NM_133757	74451	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.075000	0.671642	
mm_156956.1	chrX	169988917	169989117	+	1	NA	NA	NA	-10100	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.135000	0.706468	
mm_85020.1	chr9	88380153	88380353	-	1	NA	NA	NA	52644	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	0.015000	0.497512	-73(GGCTTTTAAGAG,-,0.00),-72(GCTTTTAAGAGG,+,0.00),-71(CTTTTAAGAGGC,+,0.00)
mm_83813.1	chr9	53610207	53610407	-	1	NA	NA	NA	43	NM_144784	110446	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	0.105000	0.686567	
mm_43865.1	chr5	143474584	143474784	+	1	NA	NA	NA	10191	NM_144915	231871	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.050000	0.587065	
mm_111963.1	chr12	109604318	109604518	-	1	NA	NA	NA	473	NR_028261	75745	Mm.293263	NR_028261		Rian	5530401N18Rik|C130089L09Rik|Meg8	RNA imprinted and accumulated in nucleus	ncRNA	0.015000	0.462687	-32(CCTTATAAATGA,+,0.00)
mm_68377.1	chr7	109169954	109170154	-	1	NA	NA	NA	458	NM_001302206	109594	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0.105000	0.681592	
mm_85118.1	chr9	95407673	95407873	-	1	NA	NA	NA	-503	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.050000	0.601990	
mm_69517.1	chr7	135525202	135525402	-	1	NA	NA	NA	3352	NM_178669	212070	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	0.005000	0.373134	
mm_68533.1	chr7	113368446	113368646	-	1	NA	NA	NA	793	NM_133700	68815	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0.015000	0.348259	53(GGCTATAAAAAA,-,0.00)
mm_26181.1	chr3	138341836	138342036	+	1	NA	NA	NA	28650	NM_026945	69117	Mm.46265	NM_026945	ENSMUSG00000053054	Adh6a	1810009C16Rik|Adh5a	alcohol dehydrogenase 6A (class V)	protein-coding	0.025000	0.487562	
mm_44609.1	chr5	25436246	25436446	-	1	NA	NA	NA	62437	NM_001081383	231051	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0.005000	0.353234	
mm_88530.1	chr10	78352446	78352646	+	1	NA	NA	NA	-846	NM_053014	28169	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.105000	0.726368	
mm_45656.1	chr5	77095185	77095385	-	1	NA	NA	NA	-18	NM_001159900	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.100000	0.721393	
mm_170301.1	chr18	33394800	33395000	+	1	NA	NA	NA	68734	NM_001267717	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.045000	0.542289	
mm_65165.1	chr7	19676691	19676891	-	1	NA	NA	NA	1150	NM_001277944	11813	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0.000000	0.597015	
mm_172431.1	chr7	28961388	28961588	-	1	NA	NA	NA	792	NM_021895	60595	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.000000	0.527363	
mm_62258.1	chr7	99313308	99313508	+	1	NA	NA	NA	39831	NM_009825	12406	Mm.22708	NM_009825	ENSMUSG00000070436	Serpinh1	BERF-1|Cbp1|Cbp2|Hsp47|J6|Serpinh2|gp46	serine (or cysteine) peptidase inhibitor, clade H, member 1	protein-coding	0.015000	0.557214	
mm_122429.1	chr14	44989814	44990014	-	1	NA	NA	NA	1803	NM_008964	19217	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.015000	0.522388	
mm_165918.1	chr4	59035156	59035356	+	1	NA	NA	NA	100	NM_025277	14700	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	0.105000	0.731343	
mm_23892.1	chr3	83031422	83031622	+	1	NA	NA	NA	5369	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.025000	0.477612	
mm_73767.1	chr8	115715822	115716022	+	1	NA	NA	NA	-9028	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.000000	0.373134	
mm_119881.1	chr14	54892396	54892596	+	1	NA	NA	NA	-1647	NM_019402	54196	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	0.005000	0.457711	
mm_47400.1	chr5	123128418	123128618	-	1	NA	NA	NA	4111	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.020000	0.552239	86(TCTTTAATAGAC,+,0.00)
mm_317.1	chr1	24678267	24678467	+	1	NA	NA	NA	-177	NM_026719	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.020000	0.432836	
mm_30948.1	chr4	33132408	33132608	+	1	NA	NA	NA	-48	NM_008075	14408	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	0.040000	0.507463	66(GCCTTAAGAGAG,+,0.00)
mm_151709.1	chr19	4615383	4615583	-	1	NA	NA	NA	184	NM_153388	225875	Mm.329675	NM_153388	ENSMUSG00000045045	Lrfn4	BC023156|Salm3	leucine rich repeat and fibronectin type III domain containing 4	protein-coding	0.080000	0.661692	
mm_105030.1	chr11	100494069	100494269	-	1	NA	NA	NA	-15689	NR_130343	102465671		NR_130343	ENSMUSG00000104854	Mir7116	mmu-mir-7116	microRNA 7116	ncRNA	0.030000	0.532338	
mm_40959.1	chr5	76951533	76951733	+	1	NA	NA	NA	-55	NM_172146	231327	Mm.202337	NM_172146	ENSMUSG00000029246	Ppat	5730454C12Rik|AA408689|AA675351|AI507113|C79945	phosphoribosyl pyrophosphate amidotransferase	protein-coding	0.100000	0.706468	
mm_146360.1	chr18	82584161	82584361	+	1	NA	NA	NA	29753	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.060000	0.512438	
mm_131349.1	chr16	13671906	13672106	+	1	NA	NA	NA	148	NM_025653	67118	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	0.070000	0.616915	
mm_36582.1	chr4	88033183	88033383	-	1	NA	NA	NA	124	NM_027326	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.075000	0.651741	
mm_164049.1	chr14	102225447	102225647	+	1	NA	NA	NA	384924	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.015000	0.452736	
mm_139829.1	chr17	69075622	69075822	+	1	NA	NA	NA	-81088	NM_013813	13823	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.095000	0.701493	
mm_52352.1	chr6	112459531	112459731	+	1	NA	NA	NA	126	NM_007617	12391	Mm.3924	NM_007617	ENSMUSG00000062694	Cav3	AI385751|Cav-3|M-cav	caveolin 3	protein-coding	0.040000	0.582090	-64(CCCCCTTTAAGG,-,0.00),-62(CCCTTTAAGGAG,+,0.00),-61(CCTTTAAGGAGC,+,0.00)
mm_145305.1	chr18	53463409	53463609	+	1	NA	NA	NA	-1037	NM_001033281	225518	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	0.015000	0.621891	
mm_59584.1	chr7	28129413	28129613	+	1	NA	NA	NA	47	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.527363	
mm_26812.1	chr3	10208478	10208678	-	1	NA	NA	NA	-2	NM_024406	11770	Mm.582	NM_024406	ENSMUSG00000062515	Fabp4	422/aP2|ALBP/Ap2|Ap2|Lbpl	fatty acid binding protein 4, adipocyte	protein-coding	0.005000	0.507463	-34(ATCTTTAAAAGT,-,0.00),-33(TCTTTAAAAGTG,+,0.00)
mm_140945.1	chr17	24514895	24515095	-	1	NA	NA	NA	12943	NM_153792	224619	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	0.020000	0.542289	
mm_7618.1	chr1	126830333	126830533	-	1	NA	NA	NA	199	NM_001081756	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.045000	0.572139	
mm_107500.1	chr12	38860947	38861147	+	1	NA	NA	NA	77336	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.010000	0.373134	
mm_99998.1	chr11	114851031	114851231	+	1	NA	NA	NA	-401	NM_001110337	70355	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.040000	0.577114	
mm_169500.1	chr1	47658602	47658802	+	1	NA	NA	NA	-191577	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA	0.000000	0.432836	
mm_53800.1	chr6	146795982	146796182	+	1	NA	NA	NA	-9448	NM_172309	272322	Mm.333500	NM_172309	ENSMUSG00000040187	Arntl2	4632430A05Rik|BMAL2|CLIF|MOP9|bHLHe6	aryl hydrocarbon receptor nuclear translocator-like 2	protein-coding	0.085000	0.726368	
mm_126999.1	chr15	95790767	95790967	+	1	NA	NA	NA	24	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.120000	0.741294	
mm_15417.1	chr2	156840059	156840259	+	1	NA	NA	NA	152	NM_173396	228839	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0.120000	0.751244	
mm_17913.1	chr2	35367634	35367834	-	1	NA	NA	NA	-5	NM_029463	75859	Mm.159604	NM_029463	ENSMUSG00000026882	4930568D16Rik	Ggta1l1	RIKEN cDNA 4930568D16 gene	protein-coding	0.010000	0.407960	
mm_102562.1	chr11	61469290	61469490	-	1	NA	NA	NA	-15398	NM_001291024	22671	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	0.010000	0.547264	-34(GGCCATAAAGGG,-,0.00)
mm_105687.1	chr11	107733857	107734057	-	1	NA	NA	NA	-17481	NM_007582	12299	Mm.57093	NM_007582	ENSMUSG00000020722	Cacng1	-	calcium channel, voltage-dependent, gamma subunit 1	protein-coding	0.010000	0.532338	
mm_142804.1	chr17	50455797	50455997	-	1	NA	NA	NA	-53650	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.030000	0.492537	
mm_154083.1	chr19	56663576	56663776	-	1	NA	NA	NA	-58696	NM_007419	11554	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.010000	0.522388	
mm_32728.1	chr4	116557596	116557796	+	1	NA	NA	NA	-31	NM_029868	77110	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	0.085000	0.681592	
mm_41332.1	chr5	90492603	90492803	+	1	NA	NA	NA	1989	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.025000	0.497512	
mm_37383.1	chr4	120979996	120980196	-	1	NA	NA	NA	-6774	NR_105982	102465614		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.025000	0.517413	
mm_138141.1	chr17	34200618	34200818	+	1	NA	NA	NA	2523	NM_010724	16913	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	0.030000	0.487562	
mm_26913.1	chr3	20122376	20122576	-	1	NA	NA	NA	32640	NM_013755	27357	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|Gyg1	glycogenin	protein-coding	0.005000	0.373134	
mm_62264.1	chr7	99478799	99478999	+	1	NA	NA	NA	808	NR_002173	449631	Mm.236868	NR_002173	ENSMUSG00000064966	Snord15b	Gm5775|Rnu15-b|Rnu15b|U15B	small nucleolar RNA, C/D box 14B	snoRNA	0.005000	0.398010	
mm_111374.1	chr12	87260601	87260801	-	1	NA	NA	NA	3543	NM_134044	104799	Mm.208750	NM_134044	ENSMUSG00000021038	Vipas39	6720456H09Rik|9330175H22Rik|AI413782|SPE-39|Spe39|Vipar|hSPE-39	VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog	protein-coding	0.035000	0.512438	
mm_13277.1	chr2	101581472	101581672	+	1	NA	NA	NA	-43176	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.010000	0.522388	
mm_96149.1	chr11	61142364	61142564	+	1	NA	NA	NA	1629	NM_021349	57916	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	0.010000	0.472637	
mm_145970.1	chr18	67933197	67933397	+	1	NA	NA	NA	40	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.110000	0.741294	-36(CCCTCTTAAAGA,-,0.00),-35(CCTCTTAAAGAG,+,0.00)
mm_128432.1	chr15	50682376	50682576	-	1	NA	NA	NA	206573	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.358209	
mm_16758.1	chr2	9869715	9869915	-	1	NA	NA	NA	8785	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.005000	0.512438	
mm_41430.1	chr5	90903598	90903798	+	1	NA	NA	NA	-201	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.030000	0.592040	
mm_73961.1	chr8	120487559	120487759	+	1	NA	NA	NA	-1207	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.115000	0.756219	
mm_76025.1	chr8	75098741	75098941	-	1	NA	NA	NA	5223	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.010000	0.512438	
mm_16846.1	chr2	11535438	11535638	-	1	NA	NA	NA	18391	NM_001177758	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.100000	0.696517	
mm_171680.1	chr4	54447714	54447914	-	1	NA	NA	NA	-500131	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.040000	0.601990	
mm_164430.1	chr16	46120160	46120360	-	1	NA	NA	NA	-12	NM_032465	84544	Mm.29204	NM_032465	ENSMUSG00000022657	Cd96	1700109I12Rik|Tactile	CD96 antigen	protein-coding	0.025000	0.472637	-96(GTCTTTTAAAGG,-,0.00),-95(TCTTTTAAAGGT,+,0.00),-94(CTTTTAAAGGTG,+,0.00)
mm_66391.1	chr7	44236011	44236211	-	1	NA	NA	NA	11	NR_029436	70004	Mm.158317	NR_029436	ENSMUSG00000038782	1700028J19Rik	-	RIKEN cDNA 1700028J19 gene	ncRNA	0.015000	0.582090	
mm_137509.1	chr17	27038035	27038235	+	1	NA	NA	NA	8876	NM_027544	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.025000	0.557214	
mm_164651.1	chr17	35649633	35649833	+	1	NA	NA	NA	25	NM_001163194	433102	Mm.136760	NM_001163194	ENSMUSG00000090509	Sfta2	EG433102	surfactant associated 2	protein-coding	0.000000	0.522388	
mm_40779.1	chr5	67287344	67287544	+	1	NA	NA	NA	-19511	NM_178651	109108	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	0.000000	0.288557	
mm_159375.1	chr3	89387549	89387749	-	1	NA	NA	NA	-4215	NR_040403	545539	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	ENSMUSG00000074466|OTTMUSG00000021274	predicted gene 15417	ncRNA	0.020000	0.616915	
mm_3428.1	chr1	150100000	150100200	+	1	NA	NA	NA	69	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.035000	0.542289	
mm_89626.1	chr10	96280476	96280676	+	1	NA	NA	NA	54369	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.005000	0.487562	
mm_47152.1	chr5	120606881	120607081	-	1	NA	NA	NA	5608	NM_029096	100764	Mm.9654	NM_029096	ENSMUSG00000029600	Rita1	1110008J03Rik|AI853657|C86297|Rita	RBPJ interacting and tubulin associated 1	protein-coding	0.015000	0.601990	
mm_63748.1	chr7	131031968	131032168	+	1	NA	NA	NA	-8	NM_001347632	12945	Mm.4138	NM_007769	ENSMUSG00000047517	Dmbt1	CRP|CRP-[a]|CRP-[b]|Crpd|DBMT1|gp300|p80	deleted in malignant brain tumors 1	protein-coding	0.020000	0.398010	
mm_87578.1	chr10	56389372	56389572	+	1	NA	NA	NA	12172	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.015000	0.378109	
mm_49721.1	chr6	34598501	34598701	+	1	NA	NA	NA	97	NM_001347100	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.010000	0.537313	
mm_122983.1	chr14	54983681	54983881	-	1	NA	NA	NA	-8005	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.015000	0.587065	
mm_129864.1	chr15	83366911	83367111	-	1	NA	NA	NA	286	NR_027980	69291	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0.105000	0.641791	
mm_136589.1	chr17	4995579	4995779	+	1	NA	NA	NA	605	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.100000	0.701493	
mm_150383.1	chr19	36348235	36348435	+	1	NA	NA	NA	-30732	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.145000	0.756219	
mm_138801.1	chr17	37997229	37997429	+	1	NA	NA	NA	-44307	NM_001011829	258094	Mm.377348	NM_001011829	ENSMUSG00000109376	Olfr761	MOR218-12|MOR218-5P|MOR218-6P|Olfr1552-ps1	olfactory receptor 761	protein-coding	0.005000	0.393035	
mm_38388.1	chr4	138819040	138819240	-	1	NA	NA	NA	117	NM_011110	18784	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	0.020000	0.577114	
mm_159933.1	chr6	71399215	71399415	-	1	NA	NA	NA	25888	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.010000	0.412935	-39(GTTTTTAAAGCA,+,0.00)
mm_9931.1	chr1	189922190	189922390	-	1	NA	NA	NA	-2	NM_026796	226830	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.155000	0.786070	
mm_121469.1	chr14	120911069	120911269	+	1	NA	NA	NA	-25	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	0.145000	0.805970	
mm_151236.1	chr19	53793304	53793504	+	1	NA	NA	NA	-98827	NM_011050	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.040000	0.537313	
mm_45647.1	chr5	76974515	76974715	-	1	NA	NA	NA	-86	NM_025691	66661	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	0.060000	0.587065	
mm_11564.1	chr2	32876089	32876289	+	1	NA	NA	NA	55	NM_146119	227737	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.130000	0.800995	
mm_52256.1	chr6	107530067	107530267	+	1	NA	NA	NA	441	NM_008516	16979	Mm.428543	NM_008516	ENSMUSG00000034648	Lrrn1	2810047E21Rik|NLRR-1	leucine rich repeat protein 1, neuronal	protein-coding	0.060000	0.696517	
mm_60478.1	chr7	44478252	44478452	+	1	NA	NA	NA	-6165	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.442786	
mm_133642.1	chr16	91738846	91739046	+	1	NA	NA	NA	9575	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.015000	0.407960	
mm_155474.1	chrX	73640274	73640474	+	1	NA	NA	NA	933	NM_029352	75590	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	0.100000	0.726368	
mm_72959.1	chr8	92827234	92827434	+	1	NA	NA	NA	37	NM_008610	17390	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	0.035000	0.631841	
mm_17557.1	chr2	30124691	30124891	-	1	NA	NA	NA	-180	NM_001290503	227693	Mm.44526	NM_178694	ENSMUSG00000039686	Zer1	C230075L19Rik|Zyg11bl	zyg-11 related, cell cycle regulator	protein-coding	0.040000	0.552239	
mm_89263.1	chr10	87859503	87859703	+	1	NA	NA	NA	551	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.025000	0.452736	82(GTTTTAAGAGAC,+,0.00)
mm_162058.1	chrX	8803813	8804013	+	1	NA	NA	NA	222	NM_199319	387586	Mm.227643	NM_199319	ENSMUSG00000071816	Ssxb5	-	synovial sarcoma, X member B5	protein-coding	0.005000	0.477612	
mm_136438.1	chr16	94526324	94526524	-	1	NA	NA	NA	205	NM_007834	13185	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	Down syndrome critical region gene 3	protein-coding	0.090000	0.611940	
mm_99084.1	chr11	99417145	99417345	+	1	NA	NA	NA	5014	NM_010661	268482	Mm.436651	NM_010661	ENSMUSG00000020912	Krt12	AI835216|K12|Krt-12|Krt1-12	keratin 12	protein-coding	0.020000	0.492537	
mm_48915.1	chr6	4003949	4004149	+	1	NA	NA	NA	62	NM_025331	66066	Mm.25547	NM_025331	ENSMUSG00000032766	Gng11	0610037B21Rik	guanine nucleotide binding protein (G protein), gamma 11	protein-coding	0.020000	0.631841	
mm_148105.1	chr18	74065569	74065769	-	1	NA	NA	NA	-720	NM_172632	225724	Mm.254517	NM_172632	ENSMUSG00000024558	Mapk4	A330097D03Rik|Erk3|Prkm4|p63Mapk	mitogen-activated protein kinase 4	protein-coding	0.035000	0.472637	-30(CCGTTTTAAAGG,-,0.00),-29(CGTTTTAAAGGG,-,0.00)
mm_81844.1	chr9	118538790	118538990	+	1	NA	NA	NA	32572	NM_018748	54214	Mm.10409	NM_018748	ENSMUSG00000038708	Golga4	AI225887|AU019508|Olp-1	golgi autoantigen, golgin subfamily a, 4	protein-coding	0.020000	0.457711	
mm_106662.1	chr11	121333475	121333675	-	1	NA	NA	NA	20872	NM_025793	66840	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0.000000	0.358209	-65(GATTATAAAAAG,-,0.00)
mm_170570.1	chr19	51142473	51142673	-	1	NA	NA	NA	-463927	NM_001290356	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.080000	0.557214	-45(AACTTTAAATGG,-,0.00)
mm_156782.1	chrX	161717379	161717579	+	1	NA	NA	NA	-74	NM_198409	24004	Mm.328503	NM_198409	ENSMUSG00000043518	Rai2	3f8	retinoic acid induced 2	protein-coding	0.115000	0.815920	
mm_17816.1	chr2	33733270	33733470	-	1	NA	NA	NA	-72446	NR_045729	320482	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0.025000	0.636816	
mm_46121.1	chr5	92435127	92435327	-	1	NA	NA	NA	-28	NM_183392	269113	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.075000	0.606965	
mm_88692.1	chr10	80121845	80122045	+	1	NA	NA	NA	6142	NM_001301854	20869	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.010000	0.487562	
mm_114558.1	chr13	74208677	74208877	+	1	NA	NA	NA	-77	NM_177333	211446	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0.075000	0.582090	
mm_138781.1	chr17	37270170	37270370	+	1	NA	NA	NA	36	NM_013819	14991	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	0.040000	0.507463	
mm_48589.1	chr5	143894890	143895090	-	1	NA	NA	NA	77	NM_025732	66729	Mm.439817	NM_025732	ENSMUSG00000029607	Ankrd61	4921520G13Rik	ankyrin repeat domain 61	protein-coding	0.020000	0.512438	
mm_140084.1	chr17	75435774	75435974	+	1	NA	NA	NA	-31	NM_001166493	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding	0.015000	0.462687	
mm_5349.1	chr1	25165056	25165256	-	1	NA	NA	NA	112798	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding	0.000000	0.393035	
mm_154015.1	chr19	53199043	53199243	-	1	NA	NA	NA	55146	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.035000	0.502488	
mm_159839.1	chr5	134456579	134456779	-	1	NA	NA	NA	37	NM_001081468	57080	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.115000	0.731343	
mm_138400.1	chr17	35058986	35059186	+	1	NA	NA	NA	51	NM_016765	51793	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	0.090000	0.676617	
mm_29815.1	chr3	127896159	127896359	-	1	NA	NA	NA	64	NM_027482	70617	Mm.317049	NM_027482	ENSMUSG00000050549	5730508B09Rik	2700063A17Rik|C80506	RIKEN cDNA 5730508B09 gene	protein-coding	0.115000	0.766169	
mm_136221.1	chr16	90138190	90138390	-	1	NA	NA	NA	-3947	NR_033476	100038709	Mm.484070	NR_033476		Gm10789	ENSMUSG00000074924	predicted gene 10789	ncRNA	0.025000	0.547264	
mm_37133.1	chr4	116807453	116807653	-	1	NA	NA	NA	6	NM_026654	68276	Mm.30534	NM_026654	ENSMUSG00000028688	Toe1	4930584N22Rik|4933424D16Rik|AI413517	target of EGR1, member 1 (nuclear)	protein-coding	0.105000	0.651741	
mm_60571.1	chr7	44481450	44481650	+	1	NA	NA	NA	-2967	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.487562	
mm_103670.1	chr11	79139989	79140189	-	1	NA	NA	NA	6265	NM_013571	16706	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb	kinase suppressor of ras 1	protein-coding	0.015000	0.447761	
mm_49300.1	chr6	17743504	17743704	+	1	NA	NA	NA	12	NM_001289627	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.015000	0.497512	
mm_104533.1	chr11	96306808	96307008	-	1	NA	NA	NA	2	NR_131758	75395	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	0.040000	0.482587	
mm_123560.1	chr14	66868327	66868527	-	1	NA	NA	NA	173	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.025000	0.373134	11(GCTTTAAAGCTG,+,0.00)
mm_155749.1	chrX	96167151	96167351	+	1	NA	NA	NA	71206	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.005000	0.393035	
mm_73000.1	chr8	93810675	93810875	+	1	NA	NA	NA	-63	NM_010308	14681	Mm.251445	NM_010308	ENSMUSG00000031748	Gnao1	AW050213|Galphao|Gnao|alphaO	guanine nucleotide binding protein, alpha O	protein-coding	0.130000	0.766169	
mm_73585.1	chr8	109868498	109868698	+	1	NA	NA	NA	-5	NM_001122594	244650	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0.145000	0.776119	
mm_38882.1	chr4	149701492	149701692	-	1	NA	NA	NA	37	NM_001029837	18707	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol 3-kinase catalytic delta polypeptide	protein-coding	0.025000	0.542289	
mm_58106.1	chr6	137649085	137649285	-	1	NA	NA	NA	100	NM_001271588	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.150000	0.786070	
mm_99776.1	chr11	107201823	107202023	+	1	NA	NA	NA	-12542	NM_001161329	68979	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.030000	0.547264	
mm_122900.1	chr14	54952906	54953106	-	1	NA	NA	NA	-3864	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.015000	0.512438	
mm_15363.1	chr2	156420750	156420950	+	1	NA	NA	NA	-59	NM_001291122	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.110000	0.731343	
mm_43054.1	chr5	124175322	124175522	+	1	NA	NA	NA	11760	NM_001289472	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.010000	0.532338	
mm_59539.1	chr7	27804788	27804988	+	1	NA	NA	NA	-2308	NM_027703	71163	Mm.440493	NM_027703	ENSMUSG00000030604	Zfp626	4833408D11Rik|4933426I21Rik|7630402I04Rik	zinc finger protein 626	protein-coding	0.055000	0.547264	
mm_136010.1	chr16	75906753	75906953	-	1	NA	NA	NA	2413	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.005000	0.358209	
mm_141042.1	chr17	25345461	25345661	-	1	NA	NA	NA	1	NM_031187	100503895	Mm.3301	NM_031187	ENSMUSG00000024173	Tpsab1	MMCP-7|Mcp-7|Mcp7|Mcpt7	tryptase alpha/beta 1	protein-coding	0.005000	0.537313	
mm_56886.1	chr6	119031165	119031365	-	1	NA	NA	NA	77230	NM_001159534	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.000000	0.422886	
mm_119748.1	chr14	54153055	54153255	+	1	NA	NA	NA	100774	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.432836	
mm_77808.1	chr9	3036272	3036472	+	1	NA	NA	NA	2371	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.368159	
mm_83712.1	chr9	50746449	50746649	-	1	NA	NA	NA	-28	NM_025865	66952	Mm.273375	NM_025865	ENSMUSG00000032062	2310030G06Rik	2610024D04Rik|AV017521	RIKEN cDNA 2310030G06 gene	protein-coding	0.040000	0.562189	
mm_153104.1	chr19	32756318	32756518	-	1	NA	NA	NA	-1159	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.040000	0.582090	
mm_100635.1	chr11	121718417	121718617	+	1	NA	NA	NA	16090	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.000000	0.492537	
mm_14428.1	chr2	130539430	130539630	+	1	NA	NA	NA	24219	NR_040348	321014	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	0.015000	0.472637	
mm_28032.1	chr3	83049707	83049907	-	1	NA	NA	NA	56	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.020000	0.452736	
mm_102955.1	chr11	69664323	69664523	-	1	NA	NA	NA	1380	NR_035455	100316840		NR_035455	ENSMUSG00000088752	Mir1934	mir-1934|mmu-mir-1934	microRNA 1934	ncRNA	0.030000	0.582090	
mm_76815.1	chr8	104442913	104443113	-	1	NA	NA	NA	34	NM_001013380	234663	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	0.120000	0.696517	
mm_20090.1	chr2	120850337	120850537	-	1	NA	NA	NA	-19	NM_001024856	140810	Mm.275698	NM_080788	ENSMUSG00000090100	Ttbk2	2610507N02Rik|AI326283|B930008N24Rik|TTK|Ttbk|Ttbk1|mKIAA0847	tau tubulin kinase 2	protein-coding	0.115000	0.716418	
mm_46325.1	chr5	100813417	100813617	-	1	NA	NA	NA	7418	NM_172405	70681	Mm.486560	NM_172405	ENSMUSG00000035234	Fam175a	3830405G04Rik|5630400M01Rik|AI506069|AL024423|AV118690|Ccdc98	family with sequence similarity 175, member A	protein-coding	0.005000	0.388060	
mm_30776.1	chr4	18193421	18193621	+	1	NA	NA	NA	340063	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.005000	0.333333	
mm_135098.1	chr16	35234823	35235023	-	1	NA	NA	NA	79287	NM_001012765	224129	Mm.41137	NM_001012765	ENSMUSG00000022840	Adcy5	AW121902|Ac5	adenylate cyclase 5	protein-coding	0.040000	0.407960	
mm_144009.1	chr17	88388368	88388568	-	1	NA	NA	NA	-52244	NM_180974	14236	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.020000	0.482587	
mm_154620.1	chrX	7722177	7722377	+	1	NA	NA	NA	57	NM_001290792	54636	Mm.305725	NM_172372	ENSMUSG00000039382	Wdr45	C79260|DXImx38e|JM5|Sfc19|WIPI-4|Wdrx1	WD repeat domain 45	protein-coding	0.050000	0.592040	
mm_140283.1	chr17	85033526	85033726	+	1	NA	NA	NA	5279	NM_009205	20532	Mm.227176	NM_009205	ENSMUSG00000024131	Slc3a1	D2H|NBAT|NTAA|RBAT	solute carrier family 3, member 1	protein-coding	0.010000	0.268657	
mm_92663.1	chr10	80421762	80421962	-	1	NA	NA	NA	11791	NM_001164150	21423	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.015000	0.597015	
mm_4394.1	chr1	172341322	172341522	+	1	NA	NA	NA	212	NM_001039484	16513	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	0.060000	0.597015	
mm_23827.1	chr3	81037071	81037271	+	1	NA	NA	NA	755	NM_019971	54635	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C	platelet-derived growth factor, C polypeptide	protein-coding	0.050000	0.572139	
mm_32528.1	chr4	108879004	108879204	+	1	NA	NA	NA	34	NM_023537	69908	Mm.41580	NM_023537	ENSMUSG00000003411	Rab3b	2610528C18Rik	RAB3B, member RAS oncogene family	protein-coding	0.065000	0.666667	
mm_74890.1	chr8	25102922	25103122	-	1	NA	NA	NA	-1211	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.075000	0.671642	
mm_95378.1	chr11	49095758	49095958	+	1	NA	NA	NA	8841	NM_008330	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.015000	0.467662	-21(GCTTATCTAGAC,+,0.00)
mm_14394.1	chr2	129801294	129801494	+	1	NA	NA	NA	65	NR_029452	654409	Mm.305555	NR_029452		4932416H05Rik	-	RIKEN cDNA 4932416H05 gene	ncRNA	0.090000	0.656716	-100(CCTTCTTAAAGG,-,0.00),-99(CTTCTTAAAGGG,+,0.00),-97(TCTTAAAGGGGC,+,0.00)
mm_34841.1	chr4	155398081	155398281	+	1	NA	NA	NA	-112	NM_008072	14403	Mm.388925	NM_008072	ENSMUSG00000029054	Gabrd	AI853201	gamma-aminobutyric acid (GABA) A receptor, subunit delta	protein-coding	0.115000	0.731343	
mm_96764.1	chr11	69917207	69917407	+	1	NA	NA	NA	3115	NM_019726	56310	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953	G protein pathway suppressor 2	protein-coding	0.010000	0.502488	
mm_10404.1	chr2	13578549	13578749	+	1	NA	NA	NA	4338	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.040000	0.557214	
mm_18067.1	chr2	42169777	42169977	-	1	NA	NA	NA	277691	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.000000	0.343284	
mm_91934.1	chr10	60696389	60696589	-	1	NA	NA	NA	1	NM_001252635	22295	Mm.440327	NM_023370	ENSMUSG00000012819	Cdh23	4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v	cadherin 23 (otocadherin)	protein-coding	0.005000	0.522388	
mm_142052.1	chr17	35638028	35638228	-	1	NA	NA	NA	5567	NM_001033366	268949	Mm.296301	NM_001033366	ENSMUSG00000073408	Dpcr1	Gm630	diffuse panbronchiolitis critical region 1 (human)	protein-coding	0.020000	0.507463	
mm_173271.1	chrX	97604127	97604327	+	1	NA	NA	NA	-227018	NM_001161433	245527	Mm.189270	NM_175540	ENSMUSG00000034457	Eda2r	9430060M22Rik|TNFRSF27|Xedar	ectodysplasin A2 receptor	protein-coding	0.035000	0.497512	
mm_23118.1	chr3	37639886	37640086	+	1	NA	NA	NA	39	NM_001305442	24063	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty homolog 1 (Drosophila)	protein-coding	0.115000	0.741294	
mm_165302.1	chr2	92914970	92915170	+	1	NA	NA	NA	-31	NM_030725	80976	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	0.090000	0.711443	
mm_139528.1	chr17	56673128	56673328	+	1	NA	NA	NA	3	NM_027933	71810	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	0.100000	0.671642	
mm_50964.1	chr6	59233374	59233574	+	1	NA	NA	NA	24604	NM_001081145	68140	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.000000	0.323383	
mm_86143.1	chr9	117093191	117093391	-	1	NA	NA	NA	159192	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.010000	0.422886	
mm_43503.1	chr5	136987301	136987501	+	1	NA	NA	NA	382	NM_011962	26433	Mm.251003	NM_011962	ENSMUSG00000004846	Plod3	AI414586|LH3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	protein-coding	0.080000	0.676617	
mm_172154.1	chr6	42020446	42020646	-	1	NA	NA	NA	-17848	NM_009299	20939	Mm.4119	NM_009299	ENSMUSG00000023289	Sva	-	seminal vesicle antigen	protein-coding	0.055000	0.517413	
mm_18312.1	chr2	54085451	54085651	-	1	NA	NA	NA	1	NM_023396	67874	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	0.095000	0.696517	
mm_87201.1	chr10	39558073	39558273	+	1	NA	NA	NA	-54761	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.025000	0.577114	
mm_131291.1	chr16	11387500	11387700	+	1	NA	NA	NA	-18048	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.005000	0.467662	29(CTCTTTTAAAAG,-,0.00)
mm_166810.1	chr7	10536618	10536818	+	1	NA	NA	NA	-8549	NM_001172072	628580	Mm.480301	NM_001172072	ENSMUSG00000047031	Vmn1r68	EG628580|Gm6898	vomeronasal 1 receptor 68	protein-coding	0.005000	0.437811	
mm_158726.1	chrX	163761234	163761434	-	1	NA	NA	NA	-2	NM_028842	74264	Mm.39304	NM_028842	ENSMUSG00000083695	Rnf138rt1	-	ring finger protein 138, retrogene 1	protein-coding	0.050000	0.597015	
mm_123861.1	chr14	72538971	72539171	-	1	NA	NA	NA	170932	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.005000	0.368159	
mm_37041.1	chr4	115780918	115781118	-	1	NA	NA	NA	16	NM_029196	75173	Mm.331798	NM_029196	ENSMUSG00000044556	Tex38	4930544O15Rik|Theg4	testis expressed 38	protein-coding	0.010000	0.542289	
mm_24566.1	chr3	93443856	93444056	+	1	NA	NA	NA	1626	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.065000	0.601990	
mm_5186.1	chr1	13096007	13096207	-	1	NA	NA	NA	31056	NM_001081209	383491	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0.010000	0.477612	
mm_37254.1	chr4	118291325	118291525	-	1	NA	NA	NA	-28	NM_011213	19268	Mm.29855	NM_011213	ENSMUSG00000033295	Ptprf	AA591035|LAR|LARS|RPTP-LAR	protein tyrosine phosphatase, receptor type, F	protein-coding	0.145000	0.776119	
mm_32981.1	chr4	120134865	120135065	+	1	NA	NA	NA	-26241	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.005000	0.422886	
mm_147683.1	chr18	60718597	60718797	-	1	NA	NA	NA	-5308	NM_008306	15531	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.015000	0.577114	
mm_101726.1	chr11	42182770	42182970	-	1	NA	NA	NA	60	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding	0.035000	0.492537	
mm_149886.1	chr19	25383410	25383610	+	1	NA	NA	NA	-122196	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.025000	0.567164	
mm_22179.1	chr2	173216775	173216975	-	1	NA	NA	NA	2047	NM_021394	58203	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.025000	0.582090	
mm_168671.1	chr11	92842742	92842942	-	1	NA	NA	NA	-256448	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	0.015000	0.532338	
mm_132815.1	chr16	45184677	45184877	+	1	NA	NA	NA	25948	NM_026402	67841	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	0.000000	0.328358	
mm_106728.1	chr12	3873070	3873270	+	1	NA	NA	NA	-10926	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.000000	0.557214	
mm_68270.1	chr7	105595551	105595751	-	1	NA	NA	NA	4465	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.025000	0.527363	
mm_14035.1	chr2	122152930	122153130	+	1	NA	NA	NA	5343	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.000000	0.358209	
mm_24716.1	chr3	95228870	95229070	+	1	NA	NA	NA	27	NM_001038708	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.130000	0.746269	
mm_143415.1	chr17	70834743	70834943	-	1	NA	NA	NA	11934	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.055000	0.552239	
mm_3404.1	chr1	143803555	143803755	+	1	NA	NA	NA	26377	NM_019562	56207	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0.010000	0.308458	
mm_45543.1	chr5	72852679	72852879	-	1	NA	NA	NA	15669	NM_001113461	21682	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.005000	0.487562	
mm_50255.1	chr6	42585928	42586128	+	1	NA	NA	NA	11344	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.338308	
mm_100925.1	chr11	6471383	6471583	-	1	NA	NA	NA	4593	NM_011221	19291	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0.005000	0.378109	
mm_49051.1	chr6	4923404	4923604	+	1	NA	NA	NA	20184	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.015000	0.398010	-40(GACTTTTAATGG,-,0.00),-38(CTTTTAATGGCG,+,0.00)
mm_59273.1	chr7	24902946	24903146	+	1	NA	NA	NA	60	NM_001130151	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.135000	0.781095	
mm_93072.1	chr10	89410745	89410945	-	1	NA	NA	NA	33122	NM_001284344	237436	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0.010000	0.393035	5(CCTCATAGAGAG,+,0.00)
mm_147823.1	chr18	61911719	61911919	-	1	NA	NA	NA	5	NM_198649	319713	Mm.329478	NM_198649	ENSMUSG00000032735	Ablim3	AW990719|D930036B08Rik	actin binding LIM protein family, member 3	protein-coding	0.100000	0.696517	
mm_3317.1	chr1	137906750	137906950	+	1	NA	NA	NA	-59605	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.010000	0.398010	
mm_126866.1	chr15	89355622	89355822	+	1	NA	NA	NA	3	NM_001271601	52683	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	0.095000	0.676617	
mm_38501.1	chr4	141088120	141088320	-	1	NA	NA	NA	-125	NM_177867	329972	Mm.247201	NM_177867	ENSMUSG00000045004	Spata21	4933414G08	spermatogenesis associated 21	protein-coding	0.010000	0.537313	
mm_99501.1	chr11	102925522	102925722	+	1	NA	NA	NA	-498	NM_197959	70218	Mm.32084	NM_197959	ENSMUSG00000051378	Kif18b	3000004C01Rik	kinesin family member 18B	protein-coding	0.010000	0.422886	
mm_16825.1	chr2	11474113	11474313	-	1	NA	NA	NA	27877	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.025000	0.557214	
mm_25877.1	chr3	130246938	130247138	+	1	NA	NA	NA	66193	NM_001244952	77018	Mm.91728	NM_029838	ENSMUSG00000058897	Col25a1	2700062B08Rik|CLAC-P	collagen, type XXV, alpha 1	protein-coding	0.005000	0.383085	
mm_48710.1	chr5	147235451	147235651	-	1	NA	NA	NA	-34580	NM_008814	18609	Mm.389714	NM_008814	ENSMUSG00000029644	Pdx1	IDX-1|IPF-1|Ipf1|Mody4|STF-1|pdx-1	pancreatic and duodenal homeobox 1	protein-coding	0.005000	0.517413	
mm_57829.1	chr6	129464368	129464568	-	1	NA	NA	NA	8311	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.005000	0.343284	
mm_111462.1	chr12	98432068	98432268	-	1	NA	NA	NA	-91676	NR_136759	105245437	Mm.446375	NR_136759		Gm40893	-	predicted gene, 40893	ncRNA	0.010000	0.402985	
mm_101683.1	chr11	40692573	40692773	-	1	NA	NA	NA	9	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.100000	0.701493	
mm_35040.1	chr4	4138686	4138886	-	1	NA	NA	NA	-341	NM_001002927	18619	Mm.475097	NM_001002927	ENSMUSG00000045573	Penk	AI326464|ENK|PPA|Penk1	preproenkephalin	protein-coding	0.110000	0.676617	
mm_33305.1	chr4	129035288	129035488	+	1	NA	NA	NA	-22883	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.020000	0.562189	
mm_82640.1	chr9	22002489	22002689	-	1	NA	NA	NA	45	NM_001163787	77609	Mm.159953	NM_029939	ENSMUSG00000039632	Ccdc151	AI644415|C330001K17Rik|b2b1885Clo	coiled-coil domain containing 151	protein-coding	0.045000	0.562189	80(CCCCTTAGAGGC,+,0.00)
mm_108449.1	chr12	82451171	82451371	+	1	NA	NA	NA	139922	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.005000	0.502488	
mm_147959.1	chr18	67062899	67063099	-	1	NA	NA	NA	-25299	NM_177137	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.020000	0.383085	
mm_14552.1	chr2	133497795	133497995	+	1	NA	NA	NA	-54264	NM_007553	12156	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.020000	0.482587	
mm_110237.1	chr12	30373245	30373445	-	1	NA	NA	NA	30	NM_172951	268534	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	0.085000	0.706468	
mm_61029.1	chr7	49522776	49522976	+	1	NA	NA	NA	113959	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.040000	0.592040	
mm_45192.1	chr5	52184509	52184709	-	1	NA	NA	NA	5937	NR_104311	13204	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	0.010000	0.417910	
mm_111182.1	chr12	83955965	83956165	-	1	NA	NA	NA	5457	NM_023633	71952	Mm.251483	NM_023633	ENSMUSG00000046791	2410016O06Rik	MAPJD|NO66	RIKEN cDNA 2410016O06 gene	protein-coding	0.010000	0.442786	
mm_19036.1	chr2	76974971	76975171	-	1	NA	NA	NA	7476	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.025000	0.507463	
mm_111504.1	chr12	99445456	99445656	-	1	NA	NA	NA	4518	NM_183186	71375	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.010000	0.422886	
mm_28619.1	chr3	95015130	95015330	-	1	NA	NA	NA	8	NM_030074	78266	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	0.085000	0.691542	
mm_104602.1	chr11	97182559	97182759	-	1	NA	NA	NA	5233	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.005000	0.437811	
mm_169104.1	chr13	44869525	44869725	-	1	NA	NA	NA	132471	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.070000	0.537313	26(CCCCAGAAAAGG,-,0.00)
mm_77201.1	chr8	113843742	113843942	-	1	NA	NA	NA	4997	NM_172466	208936	Mm.167471	NM_172466	ENSMUSG00000053399	Adamts18	9630038L21|ADAMTS21|E130314N14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	protein-coding	0.020000	0.358209	
mm_101078.1	chr11	11689666	11689866	-	1	NA	NA	NA	-411	NM_001301865	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.000000	0.393035	
mm_54149.1	chr6	22355899	22356099	-	1	NA	NA	NA	82	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.155000	0.781095	
mm_1481.1	chr1	71564385	71564585	+	1	NA	NA	NA	7329	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.035000	0.522388	
mm_10262.1	chr2	9595530	9595730	+	1	NA	NA	NA	282970	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.010000	0.477612	-33(AGCTATAAATAG,-,0.00),-31(CTATAAATAGCC,+,0.00)
mm_80443.1	chr9	77960855	77961055	+	1	NA	NA	NA	43590	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.020000	0.447761	
mm_163444.1	chr12	86833681	86833881	-	1	NA	NA	NA	51033	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.010000	0.557214	
mm_154573.1	chrX	7067425	7067625	+	1	NA	NA	NA	10	NM_009651	11643	Mm.1498	NM_009651	ENSMUSG00000050089	Akap4	AKAP-4|AKAP82|Fsc1|PRKA4|mAKAP82|p82	A kinase (PRKA) anchor protein 4	protein-coding	0.005000	0.417910	
mm_123065.1	chr14	55672074	55672274	-	1	NA	NA	NA	-61	NM_177992	105446	Mm.390685	NM_177992	ENSMUSG00000002326	Gmpr2	1810008P16Rik|5730544D12Rik|AA959850|GMPR 2	guanosine monophosphate reductase 2	protein-coding	0.050000	0.547264	
mm_126969.1	chr15	93397888	93398088	+	1	NA	NA	NA	302	NM_026025	67197	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	0.065000	0.611940	
mm_30149.1	chr3	142547545	142547745	-	1	NA	NA	NA	-12407	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.000000	0.383085	
mm_156006.1	chrX	106703870	106704070	+	1	NA	NA	NA	-100291	NM_001281859	58861	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	0.010000	0.393035	
mm_137711.1	chr17	29099545	29099745	+	1	NA	NA	NA	5876	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.010000	0.363184	
mm_153821.1	chr19	46304505	46304705	-	1	NA	NA	NA	-132	NM_001177369	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.085000	0.626866	
mm_35953.1	chr4	53127839	53128039	-	1	NA	NA	NA	31956	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.025000	0.407960	
mm_156726.1	chrX	159877967	159878167	+	1	NA	NA	NA	37599	NM_001135728	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.005000	0.402985	
mm_42134.1	chr5	111139833	111140033	+	1	NA	NA	NA	135789	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.025000	0.532338	
mm_68040.1	chr7	101361776	101361976	-	1	NA	NA	NA	13807	NM_001040111	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.005000	0.557214	
mm_94075.1	chr10	128409247	128409447	-	1	NA	NA	NA	449	NM_027257	69917	Mm.46614	NM_027257	ENSMUSG00000025374	Nabp2	2610036N15Rik|Obfc2b|SSB1	nucleic acid binding protein 2	protein-coding	0.050000	0.582090	
mm_114296.1	chr13	58906219	58906419	+	1	NA	NA	NA	98622	NM_001025074	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.020000	0.432836	
mm_18033.1	chr2	38712749	38712949	-	1	NA	NA	NA	-615	NM_001316687	26423	Mm.31387	NM_139051	ENSMUSG00000026751	Nr5a1	Ad4BP|ELP|ELP-3|Ftz-F1|Ftzf1|SF-1|SF1|STF-1	nuclear receptor subfamily 5, group A, member 1	protein-coding	0.045000	0.626866	
mm_113271.1	chr13	29016185	29016385	+	1	NA	NA	NA	30	NR_045075	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0.095000	0.552239	
mm_153596.1	chr19	43751572	43751772	-	1	NA	NA	NA	1328	NM_144874	226139	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	0.020000	0.477612	-69(TAGTATAAATGG,-,0.00)
mm_45282.1	chr5	64933478	64933678	-	1	NA	NA	NA	-20	NM_001276445	21897	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.010000	0.378109	
mm_83379.1	chr9	44561752	44561952	-	1	NA	NA	NA	-35431	NM_007551	12145	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	0.010000	0.447761	
mm_76523.1	chr8	87472273	87472473	-	1	NA	NA	NA	219	NM_019626	12404	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0.100000	0.751244	
mm_128672.1	chr15	60187238	60187438	-	1	NA	NA	NA	-170720	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.005000	0.363184	
mm_814.1	chr1	45881631	45881831	+	1	NA	NA	NA	43863	NM_016917	53945	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.005000	0.457711	
mm_129325.1	chr15	77771083	77771283	-	1	NA	NA	NA	-15954	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.035000	0.601990	
mm_72913.1	chr8	90955414	90955614	+	1	NA	NA	NA	23265	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.030000	0.537313	
mm_4140.1	chr1	170868592	170868792	+	1	NA	NA	NA	-921	NM_001081304	226641	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.055000	0.512438	
mm_103665.1	chr11	79059729	79059929	-	1	NA	NA	NA	36232	NR_045873	790910	Mm.440410	NR_045873		Gm11201	ENSMUSG00000072637|OTTMUSG00000000169	predicted gene 11201	ncRNA	0.015000	0.567164	
mm_13474.1	chr2	105682916	105683116	+	1	NA	NA	NA	553	NM_001310145	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.035000	0.537313	
mm_82457.1	chr9	15627777	15627977	-	1	NA	NA	NA	56	NM_181816	234964	Mm.32237	NM_181816	ENSMUSG00000039977	Ccdc67	4933401K09Rik|Deup1	coiled-coil domain containing 67	protein-coding	0.060000	0.691542	
mm_92177.1	chr10	67695844	67696044	-	1	NA	NA	NA	-146989	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.015000	0.487562	
mm_50999.1	chr6	63546659	63546859	+	1	NA	NA	NA	289902	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.010000	0.283582	
mm_9804.1	chr1	181917134	181917334	-	1	NA	NA	NA	-74833	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.010000	0.457711	
mm_123789.1	chr14	70429007	70429207	-	1	NA	NA	NA	-13	NM_021308	57746	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	0.060000	0.676617	
mm_170175.1	chr17	57248349	57248549	-	1	NA	NA	NA	-760	NM_030084	78308	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0.025000	0.577114	
mm_146645.1	chr18	11048556	11048756	-	1	NA	NA	NA	-3854	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.080000	0.611940	
mm_17459.1	chr2	28557567	28557767	-	1	NA	NA	NA	5736	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.020000	0.601990	
mm_27541.1	chr3	57576390	57576590	-	1	NA	NA	NA	-580	NM_001168281	97064	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0.065000	0.542289	
mm_170037.1	chr17	23260508	23260708	-	1	NA	NA	NA	51705	NM_001102584	666002	Mm.469838	NM_001102584	ENSMUSG00000091945	Vmn2r114	EG666002|V2Rp3	vomeronasal 2, receptor 114	protein-coding	0.035000	0.507463	
mm_106198.1	chr11	116842784	116842984	-	1	NA	NA	NA	565	NM_033398	107817	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	0.090000	0.671642	
mm_16653.1	chr2	6543892	6544092	-	1	NA	NA	NA	177670	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.015000	0.412935	
mm_169837.1	chr16	26866347	26866547	+	1	NA	NA	NA	101798	NM_001285916	239789	Mm.326909	NM_001013761	ENSMUSG00000068428	Gmnc	Gemc1|Gm1778|Gm606	geminin coiled-coil domain containing	protein-coding	0.045000	0.522388	
mm_25791.1	chr3	126844575	126844775	+	1	NA	NA	NA	98711	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.010000	0.353234	
mm_119379.1	chr14	41134210	41134410	+	1	NA	NA	NA	2522	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.015000	0.492537	
mm_152514.1	chr19	11279534	11279734	-	1	NA	NA	NA	4179	NM_183190	269063	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	0.010000	0.462687	
mm_32043.1	chr4	95967294	95967494	+	1	NA	NA	NA	15	NM_030014	77963	Mm.49994	NM_030014	ENSMUSG00000028572	Hook1	A930033L17Rik|azh	hook microtubule tethering protein 1	protein-coding	0.195000	0.776119	
mm_167259.1	chr8	25813667	25813867	+	1	NA	NA	NA	5293	NM_011485	20845	Mm.293314	NM_011485	ENSMUSG00000031574	Star	AV363654|D8Ertd419e|stARD1	steroidogenic acute regulatory protein	protein-coding	0.005000	0.517413	
mm_57611.1	chr6	128124272	128124472	-	1	NA	NA	NA	19206	NM_175414	109246	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597	tetraspanin 9	protein-coding	0.015000	0.542289	
mm_143009.1	chr17	56441838	56442038	-	1	NA	NA	NA	20283	NM_001252456	19280	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.010000	0.512438	
mm_27679.1	chr3	65945034	65945234	-	1	NA	NA	NA	13091	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.010000	0.373134	
mm_84620.1	chr9	70542585	70542785	-	1	NA	NA	NA	-93	NM_026337	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.125000	0.731343	
mm_76807.1	chr8	104395712	104395912	-	1	NA	NA	NA	-5	NM_153582	97487	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|ENSMUSG00000051554|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0.170000	0.840796	
mm_71767.1	chr8	66426781	66426981	+	1	NA	NA	NA	40580	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.005000	0.368159	
mm_59654.1	chr7	28179911	28180111	+	1	NA	NA	NA	-305	NM_001271370	13549	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0.090000	0.746269	
mm_161229.1	chr13	78199098	78199298	-	1	NA	NA	NA	-325	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.180000	0.800995	
mm_119786.1	chr14	54185897	54186097	+	1	NA	NA	NA	67932	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.462687	-77(CCCCATAAAGAC,-,0.00)
mm_29392.1	chr3	108904221	108904421	-	1	NA	NA	NA	7383	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.020000	0.502488	
mm_54299.1	chr6	29415451	29415651	-	1	NA	NA	NA	16625	NM_001201378	232664	Mm.251303	NM_145574	ENSMUSG00000029769	Ccdc136	4921511K06Rik|BC006583	coiled-coil domain containing 136	protein-coding	0.015000	0.492537	
mm_74215.1	chr8	123953926	123954126	+	1	NA	NA	NA	-4761	NM_172288	234865	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	0.020000	0.457711	
mm_165569.1	chr3	19217552	19217752	+	1	NA	NA	NA	29431	NR_045575	67472	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.000000	0.417910	
mm_167692.1	chr9	87734825	87735025	-	1	NA	NA	NA	-3665	NM_023814	76365	Mm.158789	NM_023814	ENSMUSG00000032419	Tbx18	2810012F10Rik|2810404D13Rik	T-box18	protein-coding	0.030000	0.482587	
mm_13545.1	chr2	112000003	112000203	+	1	NA	NA	NA	9081	NM_146449	258441	Mm.377504	NM_146449	ENSMUSG00000108827	Olfr1310	MOR245-3	olfactory receptor 1310	protein-coding	0.030000	0.447761	
mm_29454.1	chr3	113206596	113206796	-	1	NA	NA	NA	-49969	NM_001190403	545562	Mm.462977	NM_001190403		Amy2b	Amy-X|Amy2-2|OTTMUSG00000022462|mAmy2-1	amylase 2b	protein-coding	0.000000	0.348259	
mm_65346.1	chr7	24989745	24989945	-	1	NA	NA	NA	-2178	NR_106014	102465634		NR_106014	ENSMUSG00000099258	Mir7047	Gm27270|mmu-mir-7047	microRNA 7047	ncRNA	0.035000	0.582090	
mm_17094.1	chr2	23040056	23040256	-	1	NA	NA	NA	85	NM_001077192	11308	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.055000	0.651741	
mm_88522.1	chr10	78055246	78055446	+	1	NA	NA	NA	11	NM_001284200	54427	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.015000	0.567164	
mm_70946.1	chr8	26698807	26699007	+	1	NA	NA	NA	125516	NR_045904	72316	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.015000	0.373134	
mm_7843.1	chr1	132358802	132359002	-	1	NA	NA	NA	9046	NM_001311108	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.010000	0.567164	
mm_3820.1	chr1	159256655	159256855	+	1	NA	NA	NA	24429	NM_011931	26374	Mm.328135	NM_011931	ENSMUSG00000040782	Rfwd2	AI316802|C80879|Cop1	ring finger and WD repeat domain 2	protein-coding	0.005000	0.482587	
mm_92834.1	chr10	81487107	81487307	-	1	NA	NA	NA	-4498	NM_001311124	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.025000	0.636816	
mm_132299.1	chr16	33518222	33518422	+	1	NA	NA	NA	-7	NM_134251	171286	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.010000	0.557214	
mm_113493.1	chr13	37403882	37404082	+	1	NA	NA	NA	58637	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.005000	0.308458	
mm_98095.1	chr11	86613255	86613455	+	1	NA	NA	NA	-29197	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.000000	0.457711	
mm_159996.1	chr6	118757927	118758127	-	1	NA	NA	NA	-53	NM_001290335	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.025000	0.537313	-97(GCCTTTAGAGCT,+,0.00)
mm_103089.1	chr11	69920459	69920659	-	1	NA	NA	NA	71	NM_001166590	276770	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.095000	0.701493	
mm_160107.1	chr7	24546348	24546548	+	1	NA	NA	NA	-443	NM_001037143	641361	Mm.333661	NM_001037143	ENSMUSG00000011632	Pinlyp	2310033E01Rik	phospholipase A2 inhibitor and LY6/PLAUR domain containing	protein-coding	0.050000	0.631841	
mm_78402.1	chr9	28920992	28921192	+	1	NA	NA	NA	1042037	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.000000	0.303483	
mm_3009.1	chr1	133354125	133354325	+	1	NA	NA	NA	3551	NM_031192	19701	Mm.220955	NM_031192	ENSMUSG00000070645	Ren1	D19352|Ren|Ren-1|Ren-A|Ren1c|Ren1d|Rn-1|Rnr	renin 1 structural	protein-coding	0.025000	0.532338	
mm_103200.1	chr11	70651982	70652182	-	1	NA	NA	NA	2568	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.015000	0.512438	
mm_90110.1	chr10	117277235	117277435	+	1	NA	NA	NA	4937	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.005000	0.378109	
mm_150849.1	chr19	44989976	44990176	+	1	NA	NA	NA	732	NM_011976	26456	Mm.34404	NM_011976	ENSMUSG00000025207	Sema4g	AI507908|AW554132	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G	protein-coding	0.025000	0.587065	
mm_157394.1	chrX	38406706	38406906	-	1	NA	NA	NA	49654	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.000000	0.378109	57(GCTTATATGGTA,+,0.00)
mm_78081.1	chr9	15730779	15730979	+	1	NA	NA	NA	21110	NM_172289	234967	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.005000	0.482587	
mm_156117.1	chrX	114904888	114905088	+	1	NA	NA	NA	-24	NM_001276396	237009	Mm.302216	NM_207241	ENSMUSG00000050435	Ube2dnl1	Ube2dnl	ubiquitin-conjugating enzyme E2D N-terminal like 1	protein-coding	0.015000	0.472637	-20(CTCTTTAAAGGT,+,0.00)
mm_148927.1	chr19	6996122	6996322	+	1	NA	NA	NA	91	NR_027351	107328	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	0.075000	0.641791	
mm_4532.1	chr1	175698493	175698693	+	1	NA	NA	NA	0	NM_029453	75820	Mm.50361	NM_029453	ENSMUSG00000026523	Wdr64	4930415O10Rik|4930511H01Rik	WD repeat domain 64	protein-coding	0.000000	0.462687	58(GGATATAAAAGT,-,0.00)
mm_84134.1	chr9	59036324	59036524	-	1	NA	NA	NA	17	NM_008684	18007	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0.145000	0.761194	
mm_60459.1	chr7	44477589	44477789	+	1	NA	NA	NA	-6828	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.437811	
mm_164706.1	chr17	52349945	52350145	-	1	NA	NA	NA	-252664	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.020000	0.487562	
mm_15314.1	chr2	155568077	155568277	+	1	NA	NA	NA	-11247	NR_040613	74945	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	0.005000	0.492537	
mm_31007.1	chr4	40193643	40193843	+	1	NA	NA	NA	46082	NM_172689	230073	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.035000	0.562189	
mm_71728.1	chr8	61977479	61977679	+	1	NA	NA	NA	49492	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.005000	0.402985	
mm_118274.1	chr13	112620642	112620842	-	1	NA	NA	NA	31568	NM_010029	13206	Mm.12818	NM_010029	ENSMUSG00000021758	Ddx4	AV206478|Mvh|VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding	0.015000	0.402985	
mm_29201.1	chr3	106766635	106766835	-	1	NA	NA	NA	23414	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.000000	0.313433	61(CCCTCTTAAAGT,-,0.00)
mm_131245.1	chr16	10526335	10526535	+	1	NA	NA	NA	16619	NM_021428	58239	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0.025000	0.462687	
mm_23257.1	chr3	51340108	51340308	+	1	NA	NA	NA	436	NM_001291059	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.170000	0.800995	
mm_83130.1	chr9	40434945	40435145	-	1	NA	NA	NA	20719	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.005000	0.467662	
mm_144696.1	chr18	34862409	34862609	+	1	NA	NA	NA	1302	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.040000	0.552239	
mm_42684.1	chr5	119832015	119832215	+	1	NA	NA	NA	-2548	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.040000	0.557214	
mm_9011.1	chr1	166047729	166047929	-	1	NA	NA	NA	-45195	NM_011137	18986	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0.035000	0.512438	
mm_146636.1	chr18	10610034	10610234	-	1	NA	NA	NA	218	NM_001081222	77805	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	0.135000	0.716418	
mm_97206.1	chr11	75607789	75607989	+	1	NA	NA	NA	-7658	NR_110477	654359	Mm.439961	NR_110477		Gm12338	OTTMUSG00000006216	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.005000	0.522388	
mm_92.1	chr1	7111553	7111753	+	1	NA	NA	NA	22733	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.000000	0.437811	-13(TTCTTTTTAAGG,-,0.00),-11(CTTTTTAAGGCT,+,0.00)
mm_13529.1	chr2	110557040	110557240	+	1	NA	NA	NA	-40159	NM_001003915	241612	Mm.277148	NM_001003915	ENSMUSG00000041644	Slc5a12	AI315119|D630015G19|SMCT2	solute carrier family 5 (sodium/glucose cotransporter), member 12	protein-coding	0.000000	0.348259	
mm_124697.1	chr15	6439134	6439334	+	1	NA	NA	NA	-6099	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.005000	0.398010	-16(CTATTAATAGGG,+,0.00)
mm_137329.1	chr17	25045266	25045466	+	1	NA	NA	NA	29280	NM_134126	106633	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	0.000000	0.437811	
mm_65229.1	chr7	19715328	19715528	-	1	NA	NA	NA	1	NM_001109748	53333	Mm.61682	NM_016871	ENSMUSG00000002984	Tomm40	AW539759|Mom35|Tom40	translocase of outer mitochondrial membrane 40 homolog (yeast)	protein-coding	0.110000	0.656716	
mm_58579.1	chr7	4915116	4915316	+	1	NA	NA	NA	-1	NM_170759	232816	Mm.27442	NM_170759	ENSMUSG00000074406	Zfp628	Zec|Znf628	zinc finger protein 628	protein-coding	0.135000	0.756219	
mm_53793.1	chr6	146657126	146657326	+	1	NA	NA	NA	8	NR_046277	74925	Mm.386304	NR_046277	ENSMUSG00000085238	4930479D17Rik	-	RIKEN cDNA 4930479D17 gene	ncRNA	0.005000	0.467662	
mm_100041.1	chr11	114998820	114999020	+	1	NA	NA	NA	2960	NM_134158	140497	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0.015000	0.462687	
mm_11188.1	chr2	29099810	29100010	+	1	NA	NA	NA	-25082	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.035000	0.532338	
mm_16232.1	chr2	173156113	173156313	+	1	NA	NA	NA	3140	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.025000	0.552239	
mm_29363.1	chr3	108653711	108653911	-	1	NA	NA	NA	-102	NM_145543	229725	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	0.075000	0.532338	
mm_115590.1	chr13	11827009	11827209	-	1	NA	NA	NA	279836	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.000000	0.368159	-65(CCTTTTAGATAC,+,0.00)
mm_78818.1	chr9	44084938	44085138	+	1	NA	NA	NA	118	NM_198091	53376	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.135000	0.731343	
mm_104653.1	chr11	97575123	97575323	-	1	NA	NA	NA	-97	NM_018873	56013	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.185000	0.766169	
mm_82300.1	chr9	7864177	7864377	-	1	NA	NA	NA	8893	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.020000	0.487562	
mm_68877.1	chr7	126447390	126447590	-	1	NA	NA	NA	15583	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.020000	0.567164	
mm_139027.1	chr17	46160469	46160669	+	1	NA	NA	NA	-463	NM_019581	56055	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.025000	0.472637	
mm_97261.1	chr11	75764534	75764734	+	1	NA	NA	NA	-31175	NR_136933	102641247	Mm.411386	NR_136932		Gm12339	OTTMUSG00000006218	predicted gene 12339	ncRNA	0.010000	0.452736	
mm_5409.1	chr1	33814301	33814501	-	1	NA	NA	NA	194	NM_133817	98403	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	0.145000	0.771144	
mm_8685.1	chr1	156939543	156939743	-	1	NA	NA	NA	-17	NM_023884	78255	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0.200000	0.820896	
mm_146283.1	chr18	77938365	77938565	+	1	NA	NA	NA	-2	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.070000	0.651741	
mm_75753.1	chr8	69901920	69902120	-	1	NA	NA	NA	-164	NM_032004	83984	Mm.432504	NM_032004	ENSMUSG00000047654	Tssk6	Sstk|TSK-6|TSSK-6	testis-specific serine kinase 6	protein-coding	0.050000	0.626866	-14(CGCCCTTAATGG,-,0.00),-12(CCCTTAATGGTC,+,0.00)
mm_133451.1	chr16	88777732	88777932	+	1	NA	NA	NA	-3626	NM_027170	69696	Mm.358728	NM_027170	ENSMUSG00000048830	2310057N15Rik	Krtap13-1	RIKEN cDNA 2310057N15 gene	protein-coding	0.010000	0.472637	-33(GAGTATATAAAC,-,0.00)
mm_22117.1	chr2	170151576	170151776	-	1	NA	NA	NA	-9001	NM_001159683	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.030000	0.517413	
mm_37348.1	chr4	119966789	119966989	-	1	NA	NA	NA	152211	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.030000	0.557214	-33(CTCCTTAAATGG,-,0.00),-31(CCTTAAATGGGG,+,0.00)
mm_25589.1	chr3	116886110	116886310	+	1	NA	NA	NA	24530	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.010000	0.368159	
mm_140491.1	chr17	3283180	3283380	-	1	NA	NA	NA	-43293	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.010000	0.462687	
mm_122432.1	chr14	45158349	45158549	-	1	NA	NA	NA	60976	NM_172597	70561	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.015000	0.373134	
mm_35472.1	chr4	40823485	40823685	-	1	NA	NA	NA	26553	NR_039584	100628614		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.025000	0.502488	
mm_110446.1	chr12	51134815	51135015	-	1	NA	NA	NA	129759	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA	0.040000	0.552239	-95(TGCTATTTAAGA,-,0.00)
mm_83956.1	chr9	56928271	56928471	-	1	NA	NA	NA	0	NM_175483	235406	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	0.100000	0.661692	
mm_75997.1	chr8	72464151	72464351	-	1	NA	NA	NA	5838	NR_106036	102465647		NR_106036	ENSMUSG00000099079	Mir7068	Gm27570|mmu-mir-7068	microRNA 7068	ncRNA	0.040000	0.631841	
mm_84162.1	chr9	59563837	59564037	-	1	NA	NA	NA	-14400	NM_175235	76183	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0.040000	0.512438	
mm_150190.1	chr19	32665675	32665875	+	1	NA	NA	NA	45770	NM_011864	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.010000	0.368159	
mm_50783.1	chr6	53698000	53698200	+	1	NA	NA	NA	122725	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.015000	0.348259	
mm_136518.1	chr16	97454117	97454317	-	1	NA	NA	NA	8688	NM_010846	17857	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.005000	0.522388	
mm_71754.1	chr8	65966542	65966742	+	1	NA	NA	NA	348117	NM_175188	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.020000	0.502488	
mm_166987.1	chr7	45731848	45732048	-	1	NA	NA	NA	-6132	NM_027055	69363	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	0.020000	0.517413	
mm_114020.1	chr13	52618634	52618834	+	1	NA	NA	NA	21852	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.020000	0.527363	
mm_95480.1	chr11	51262463	51262663	+	1	NA	NA	NA	388	NM_177567	193286	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0.025000	0.467662	81(GTTTTTAGAGGC,+,0.00)
mm_69248.1	chr7	127824671	127824871	-	1	NA	NA	NA	-240	NM_024414	56216	Mm.439759	NM_024414	ENSMUSG00000030806	Stx1b	Stx1b2|Stx1bl|Syn1b	syntaxin 1B	protein-coding	0.020000	0.582090	
mm_129768.1	chr15	82693003	82693203	-	1	NA	NA	NA	-3045	NR_033515	627860	Mm.486636	NR_033515		Cyp2d37-ps	EG627860|Gm6800	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene	pseudo	0.005000	0.517413	
mm_52092.1	chr6	97835076	97835276	+	1	NA	NA	NA	28118	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.452736	
mm_75086.1	chr8	33927373	33927573	-	1	NA	NA	NA	2390	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.000000	0.427861	
mm_14989.1	chr2	152243243	152243443	+	1	NA	NA	NA	16503	NM_007788	12995	Mm.23692	NM_007788	ENSMUSG00000074698	Csnk2a1	Csnk2a1-rs4	casein kinase 2, alpha 1 polypeptide	protein-coding	0.000000	0.427861	
mm_15372.1	chr2	156432900	156433100	+	1	NA	NA	NA	12091	NM_001291123	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.005000	0.621891	
mm_33611.1	chr4	132608424	132608624	+	1	NA	NA	NA	-30522	NM_210071	14050	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0.005000	0.472637	34(CTTTATAAATCC,+,0.00)
mm_54206.1	chr6	25688674	25688874	-	1	NA	NA	NA	1206	NM_010338	14763	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	0.030000	0.616915	
mm_142422.1	chr17	45568903	45569103	-	1	NA	NA	NA	4258	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.035000	0.527363	
mm_25237.1	chr3	103901716	103901916	+	1	NA	NA	NA	-12304	NM_172684	229675	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0.015000	0.577114	
mm_25708.1	chr3	122511110	122511310	+	1	NA	NA	NA	30471	NR_106117	102465764		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.030000	0.517413	
mm_114944.1	chr13	96542651	96542851	+	1	NA	NA	NA	16	NM_023420	68018	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	0.065000	0.676617	
mm_150800.1	chr19	44305833	44306033	+	1	NA	NA	NA	2762	NR_039574	100628619		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.045000	0.562189	
mm_30041.1	chr3	135696722	135696922	-	1	NA	NA	NA	-5275	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.015000	0.467662	
mm_30792.1	chr4	19708491	19708691	+	1	NA	NA	NA	413	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.065000	0.557214	
mm_28740.1	chr3	95737751	95737951	-	1	NA	NA	NA	1718	NM_007899	13601	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	0.010000	0.592040	
mm_61354.1	chr7	68338239	68338439	+	1	NA	NA	NA	-61745	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.010000	0.422886	
mm_165420.1	chr2	148522275	148522475	+	1	NA	NA	NA	-78840	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.005000	0.492537	
mm_147153.1	chr18	36679139	36679339	-	1	NA	NA	NA	24	NM_026404	67843	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	0.105000	0.621891	
mm_55677.1	chr6	72598303	72598503	-	1	NA	NA	NA	10	NM_144917	232089	Mm.167232	NM_144917	ENSMUSG00000056698	Elmod3	AI844780|C330008I15Rik|RBM29|Rbed1	ELMO/CED-12 domain containing 3	protein-coding	0.065000	0.562189	
mm_158436.1	chrX	140062354	140062554	-	1	NA	NA	NA	114	NM_001081668	279706	Mm.102590	NM_001081668	ENSMUSG00000072944	Nup62cl	Gm719	nucleoporin 62 C-terminal like	protein-coding	0.100000	0.631841	
mm_75183.1	chr8	36952344	36952544	-	1	NA	NA	NA	-2	NM_001194940	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.030000	0.542289	73(GCATTTAGAGGA,+,0.00)
mm_94144.1	chr10	128737507	128737707	-	1	NA	NA	NA	6449	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.045000	0.611940	
mm_160523.1	chr9	35844026	35844226	-	1	NA	NA	NA	24	NM_029863	77080	Mm.159846	NM_029863	ENSMUSG00000047980	9230110F15Rik	Pate-A|Pate5|mANLP3	RIKEN cDNA 9230110F15 gene	protein-coding	0.005000	0.512438	
mm_140203.1	chr17	83729097	83729297	+	1	NA	NA	NA	23034	NM_001171052	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.025000	0.527363	
mm_117862.1	chr13	98839462	98839662	-	1	NA	NA	NA	-24113	NM_172591	218503	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.015000	0.318408	-48(GGATATATAAAG,-,0.00),-7(TTTTTTATGGAG,+,0.00)
mm_45533.1	chr5	72752674	72752874	-	1	NA	NA	NA	3	NM_001289494	22165	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.015000	0.477612	
mm_153129.1	chr19	34165965	34166165	-	1	NA	NA	NA	-24	NM_024204	52024	Mm.183030	NM_024204	ENSMUSG00000024774	Ankrd22	5430429D21Rik|D19Ertd675e	ankyrin repeat domain 22	protein-coding	0.015000	0.512438	
mm_81766.1	chr9	114401361	114401561	+	1	NA	NA	NA	366	NM_001200002	100504715	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	0.130000	0.741294	
mm_18455.1	chr2	60963124	60963324	-	1	NA	NA	NA	-20	NM_020296	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.105000	0.741294	
mm_81351.1	chr9	108569856	108570056	+	1	NA	NA	NA	64	NM_026378	67789	Mm.458081	NM_026378	ENSMUSG00000019039	Dalrd3	6330580J24Rik|C77829|mir-425	DALR anticodon binding domain containing 3	protein-coding	0.080000	0.597015	-7(GGCCCTTAATGC,-,0.00)
mm_103888.1	chr11	83574887	83575087	-	1	NA	NA	NA	3649	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.000000	0.402985	
mm_10383.1	chr2	12301140	12301340	+	1	NA	NA	NA	-6	NR_040353	338535	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.025000	0.507463	
mm_135025.1	chr16	32522212	32522412	-	1	NA	NA	NA	26031	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.005000	0.427861	
mm_111329.1	chr12	86726021	86726221	-	1	NA	NA	NA	-186	NR_136890	102635405		NR_136890		Gm32755	-	predicted gene, 32755	ncRNA	0.085000	0.686567	
mm_52182.1	chr6	99433385	99433585	+	1	NA	NA	NA	1860	NM_053202	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.020000	0.412935	
mm_143448.1	chr17	70919772	70919972	-	1	NA	NA	NA	-66340	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.015000	0.417910	
mm_13185.1	chr2	93187448	93187648	+	1	NA	NA	NA	-36	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.085000	0.746269	
mm_58170.1	chr6	142702139	142702339	-	1	NA	NA	NA	35	NM_021041	20928	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0.055000	0.567164	
mm_167486.1	chr8	129263514	129263714	+	1	NA	NA	NA	-16	NM_001346808	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	0.040000	0.577114	
mm_107648.1	chr12	52516174	52516374	+	1	NA	NA	NA	197	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0.005000	0.353234	
mm_162162.1	chrX	94724527	94724727	+	1	NA	NA	NA	58	NM_001081473	668166	Mm.426145	NM_001081473	ENSMUSG00000073062	Zxdb	Zxda	zinc finger, X-linked, duplicated B	protein-coding	0.115000	0.636816	
mm_41492.1	chr5	92137857	92138057	+	1	NA	NA	NA	19	NM_019490	56041	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0.135000	0.741294	
mm_39435.1	chr5	16553773	16553973	+	1	NA	NA	NA	-28	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.035000	0.507463	
mm_111978.1	chr12	110278844	110279044	-	1	NA	NA	NA	-286	NM_172119	107585	Mm.154427	NM_172119	ENSMUSG00000075707	Dio3	-	deiodinase, iodothyronine type III	protein-coding	0.095000	0.726368	
mm_25169.1	chr3	103073942	103074142	+	1	NA	NA	NA	28	NM_001033303	229665	Mm.331272	NM_001033303	ENSMUSG00000070385	Ampd1	AI553520|Ampd-1	adenosine monophosphate deaminase 1	protein-coding	0.005000	0.462687	
mm_47578.1	chr5	124540988	124541188	-	1	NA	NA	NA	297	NM_019770	56334	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	0.160000	0.776119	
mm_74793.1	chr8	22398168	22398368	-	1	NA	NA	NA	353	NM_181325	18408	Mm.200907	NM_181325	ENSMUSG00000031482	Slc25a15	D630044L02Rik|Ornt1	solute carrier family 25 (mitochondrial carrier ornithine transporter), member 15	protein-coding	0.160000	0.781095	
mm_152535.1	chr19	11327034	11327234	-	1	NA	NA	NA	7561	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.000000	0.482587	
mm_55680.1	chr6	72610421	72610621	-	1	NA	NA	NA	6227	NM_009444	22135	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	0.010000	0.452736	
mm_102063.1	chr11	52256746	52256946	-	1	NA	NA	NA	24851	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.035000	0.582090	
mm_29798.1	chr3	127780108	127780308	-	1	NA	NA	NA	319	NM_027808	71481	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	0.040000	0.482587	
mm_83730.1	chr9	51056602	51056802	-	1	NA	NA	NA	20392	NM_001033534	244864	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0.005000	0.378109	
mm_59384.1	chr7	26189786	26189986	+	1	NA	NA	NA	16477	NM_010000	13094	Mm.14413	NM_010000	ENSMUSG00000040660	Cyp2b9	Cyp2b	cytochrome P450, family 2, subfamily b, polypeptide 9	protein-coding	0.005000	0.388060	
mm_105278.1	chr11	102407837	102408037	-	1	NA	NA	NA	-420	NM_026542	68066	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.050000	0.557214	
mm_305.1	chr1	23761888	23762088	+	1	NA	NA	NA	62	NM_172124	280645	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0.085000	0.646766	
mm_140032.1	chr17	74338668	74338868	+	1	NA	NA	NA	-219	NM_001162870	50850	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	0.115000	0.726368	
mm_29121.1	chr3	105052827	105053027	-	1	NA	NA	NA	26	NM_001163333	80281	Mm.200327	NM_030249	ENSMUSG00000062127	Cttnbp2nl	AA552995|AA589392|AU018624|BC003236|mKIAA1433	CTTNBP2 N-terminal like	protein-coding	0.110000	0.751244	
mm_63116.1	chr7	122671287	122671487	+	1	NA	NA	NA	-357	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.055000	0.567164	
mm_4671.1	chr1	180387902	180388102	+	1	NA	NA	NA	-57453	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.010000	0.343284	
mm_170500.1	chr19	24290097	24290297	-	1	NA	NA	NA	-9611	NM_008044	14297	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	0.035000	0.552239	
mm_78759.1	chr9	43303136	43303336	+	1	NA	NA	NA	-7527	NM_023655	72169	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	0.005000	0.452736	
mm_27147.1	chr3	32949700	32949900	-	1	NA	NA	NA	35279	NM_001163517	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.010000	0.407960	
mm_25214.1	chr3	103846745	103846945	+	1	NA	NA	NA	-12950	NR_104070	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.025000	0.442786	
mm_43783.1	chr5	142441008	142441208	+	1	NA	NA	NA	-22823	NM_172725	231855	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.010000	0.522388	
mm_80428.1	chr9	77921393	77921593	+	1	NA	NA	NA	4128	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.025000	0.562189	
mm_68959.1	chr7	126566290	126566490	-	1	NA	NA	NA	-24	NM_146200	56347	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.070000	0.606965	
mm_61071.1	chr7	51511057	51511257	+	1	NA	NA	NA	128	NM_001271879	233246	Mm.254431	NM_177694	ENSMUSG00000055489	Ano5	9330162L24|Gdd1|Tmem16e	anoctamin 5	protein-coding	0.050000	0.592040	
mm_107789.1	chr12	61610366	61610566	+	1	NA	NA	NA	87299	NM_001310586	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.000000	0.472637	
mm_118156.1	chr13	105250364	105250564	-	1	NA	NA	NA	42550	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.025000	0.527363	
mm_22986.1	chr3	33621484	33621684	+	1	NA	NA	NA	-178599	NM_027619	67120	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	0.030000	0.532338	
mm_1405.1	chr1	67152372	67152572	+	1	NA	NA	NA	29445	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.010000	0.412935	
mm_61296.1	chr7	67660820	67661020	+	1	NA	NA	NA	13510	NM_025905	67009	Mm.249356	NM_025905	ENSMUSG00000030555	Ttc23	1600012K10Rik	tetratricopeptide repeat domain 23	protein-coding	0.040000	0.497512	
mm_120071.1	chr14	57058118	57058318	+	1	NA	NA	NA	-188	NM_016975	14611	Mm.57207	NM_016975	ENSMUSG00000048582	Gja3	Cnx46|Cx43|Cx46|Gja-3	gap junction protein, alpha 3	protein-coding	0.065000	0.542289	-33(AGCTATAAATAG,-,0.00)
mm_76944.1	chr8	105965979	105966179	-	1	NA	NA	NA	36	NM_001253804	20498	Mm.292447	NM_009195	ENSMUSG00000017765	Slc12a4	AW546649|KCC1|RBCKCC1	solute carrier family 12, member 4	protein-coding	0.150000	0.786070	
mm_54209.1	chr6	25689401	25689601	-	1	NA	NA	NA	479	NM_010338	14763	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	0.030000	0.522388	
mm_72709.1	chr8	84986272	84986472	+	1	NA	NA	NA	-4223	NM_133255	170833	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	0.015000	0.517413	
mm_171922.1	chr5	58281118	58281318	+	1	NA	NA	NA	171780	NR_046190	78163	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA	0.015000	0.522388	-33(GGGTATTTAAGG,-,0.00)
mm_93007.1	chr10	87057825	87058025	-	1	NA	NA	NA	-121	NM_029685	76640	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding	0.030000	0.547264	62(CAGCTTAAAAAG,-,0.00),64(GCTTAAAAAGAT,+,0.00)
mm_30449.1	chr3	153852321	153852521	-	1	NA	NA	NA	3	NR_040373	72317	Mm.440147	NR_040373	ENSMUSG00000086438	Asb17os	2510003D18Rik	ankyrin repeat and SOCS box-containing 17, opposite strand	ncRNA	0.025000	0.527363	-98(GTGCTTAAAAGG,-,0.00),-96(GCTTAAAAGGGT,+,0.00)
mm_36421.1	chr4	81361382	81361582	-	1	NA	NA	NA	81333	NM_010820	17475	Mm.153039	NM_010820	ENSMUSG00000028402	Mpdz	AI225843|B930003D11Rik|MUPP1	multiple PDZ domain protein	protein-coding	0.010000	0.472637	
mm_6885.1	chr1	84695673	84695873	-	1	NA	NA	NA	-66	NR_039588	100628595		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0.130000	0.756219	
mm_137403.1	chr17	25919255	25919455	+	1	NA	NA	NA	359	NM_139154	224624	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	0.115000	0.701493	
mm_67202.1	chr7	74302451	74302651	-	1	NA	NA	NA	252229	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.015000	0.452736	
mm_20776.1	chr2	143948336	143948536	-	1	NA	NA	NA	33105	NM_019771	56431	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.010000	0.482587	-39(GACTAGAAAAAG,-,0.00)
mm_51036.1	chr6	65594678	65594878	+	1	NA	NA	NA	4380	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.010000	0.293532	
mm_2355.1	chr1	92934712	92934912	+	1	NA	NA	NA	404	NM_011796	23830	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	0.125000	0.706468	
mm_16722.1	chr2	7328194	7328394	-	1	NA	NA	NA	67706	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.010000	0.323383	
mm_162482.1	chr1	134405957	134406157	+	1	NA	NA	NA	67	NM_028057	72017	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	0.085000	0.696517	
mm_70262.1	chr8	3522486	3522686	+	1	NA	NA	NA	7202	NM_015801	50767	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0.010000	0.547264	
mm_64847.1	chr7	13023114	13023314	-	1	NA	NA	NA	-938	NM_011588	21849	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	0.050000	0.631841	
mm_112452.1	chr13	5863721	5863921	+	1	NA	NA	NA	2332	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.005000	0.452736	
mm_135802.1	chr16	57265387	57265587	-	1	NA	NA	NA	27364	NM_027651	71027	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	0.030000	0.532338	
mm_84611.1	chr9	70413154	70413354	-	1	NA	NA	NA	-7501	NR_049200	100885839		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0.025000	0.552239	
mm_57080.1	chr6	122581689	122581889	-	1	NA	NA	NA	20655	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.015000	0.333333	
mm_132351.1	chr16	34119987	34120187	+	1	NA	NA	NA	-153084	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.005000	0.422886	
mm_34678.1	chr4	150945234	150945434	+	1	NA	NA	NA	17335	NM_001077509	21942	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.000000	0.338308	
mm_78823.1	chr9	44101629	44101829	+	1	NA	NA	NA	-41	NM_001190314	259172	Mm.227110	NM_147126	ENSMUSG00000034739	Mfrp	rd6	membrane frizzled-related protein	protein-coding	0.025000	0.567164	
mm_161684.1	chr17	20419130	20419330	+	1	NA	NA	NA	67	NM_001166735	665525	Mm.480265	NM_001166735	ENSMUSG00000091151	Vmn1r224	EG665525|Gm7673	vomeronasal 1 receptor 224	protein-coding	0.000000	0.343284	
mm_82478.1	chr9	16502399	16502599	-	1	NA	NA	NA	-124268	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.045000	0.567164	
mm_154865.1	chrX	20671256	20671456	+	1	NA	NA	NA	8460	NM_001136085	22201	Mm.1104	NM_009457	ENSMUSG00000001924	Uba1	A1S9|Sbx|Ube-1|Ube1x	ubiquitin-like modifier activating enzyme 1	protein-coding	0.015000	0.402985	-40(GGGCATATAAGA,-,0.00)
mm_131208.1	chr16	8680693	8680893	+	1	NA	NA	NA	23	NM_001324517	436336	Mm.357666	NM_001324517		Gm5767	EG436336	predicted gene 5767	protein-coding	0.010000	0.547264	
mm_4599.1	chr1	178405933	178406133	+	1	NA	NA	NA	152	NM_026626	68226	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.100000	0.681592	
mm_57595.1	chr6	127769604	127769804	-	1	NA	NA	NA	-545	NM_201371	381813	Mm.39750	NM_201371	ENSMUSG00000030350	Prmt8	Hrmt1l3|Hrmt1l4	protein arginine N-methyltransferase 8	protein-coding	0.015000	0.547264	
mm_106885.1	chr12	8011980	8012180	+	1	NA	NA	NA	34403	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.432836	
mm_145311.1	chr18	53877640	53877840	+	1	NA	NA	NA	15627	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.000000	0.393035	
mm_97381.1	chr11	77718638	77718838	+	1	NA	NA	NA	6555	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.020000	0.442786	
mm_1311.1	chr1	65029735	65029935	+	1	NA	NA	NA	2924	NM_027582	70861	Mm.18725	NM_027582	ENSMUSG00000025955	Akr1cl	4921521F21Rik|AI451536|AI503553	aldo-keto reductase family 1, member C-like	protein-coding	0.010000	0.442786	
mm_45957.1	chr5	90463929	90464129	-	1	NA	NA	NA	3159	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.020000	0.452736	
mm_81967.1	chr9	120959463	120959663	+	1	NA	NA	NA	4477	NR_106058	102465661		NR_106058	ENSMUSG00000106193	Mir7090	mmu-mir-7090	microRNA 7090	ncRNA	0.005000	0.462687	-25(GCTTATAAAAGC,+,0.00),-25(GCTTATAAAAGC,-,0.00)
mm_24410.1	chr3	90465988	90466188	+	1	NA	NA	NA	-222	NM_008727	18160	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.085000	0.676617	
mm_163837.1	chr14	19417765	19417965	-	1	NA	NA	NA	184722	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.030000	0.373134	
mm_114872.1	chr13	94083395	94083595	+	1	NA	NA	NA	25699	NM_172589	218454	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.035000	0.457711	-33(CTCCTTTAAAAG,-,0.00),-32(TCCTTTAAAAGC,-,0.00),-31(CCTTTAAAAGCT,+,0.00)
mm_13641.1	chr2	114049074	114049274	+	1	NA	NA	NA	3701	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.020000	0.512438	
mm_79320.1	chr9	52172722	52172922	+	1	NA	NA	NA	-4711	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.020000	0.477612	
mm_128806.1	chr15	66948959	66949159	-	1	NA	NA	NA	20582	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.005000	0.492537	
mm_83666.1	chr9	49714064	49714264	-	1	NA	NA	NA	84905	NM_001081445	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding	0.000000	0.353234	
mm_110912.1	chr12	76216786	76216986	-	1	NA	NA	NA	29860	NM_019784	80384	Mm.78551	NM_019784	ENSMUSG00000021056	Tex21	4931406F04Rik|4931412D23Rik|4931421K24Rik|tsec-2	testis expressed gene 21	protein-coding	0.025000	0.537313	
mm_103527.1	chr11	77078323	77078523	-	1	NA	NA	NA	14	NM_001012309	237859	Mm.156195	NM_001012309	ENSMUSG00000037958	Nsrp1	8030451K07|AI851076|AL022898|Ccdc55|NSpr70|NSrp70	nuclear speckle regulatory protein 1	protein-coding	0.105000	0.621891	
mm_54421.1	chr6	32993547	32993747	-	1	NA	NA	NA	66505	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0.005000	0.263682	13(TCTTTTAAACAG,+,0.00)
mm_132698.1	chr16	43362956	43363156	+	1	NA	NA	NA	57140	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.020000	0.527363	
mm_17902.1	chr2	35200711	35200911	-	1	NA	NA	NA	309	NM_026697	68365	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.095000	0.736318	
mm_115404.1	chr13	114048390	114048590	+	1	NA	NA	NA	103102	NR_045836	319803	Mm.386896	NM_177004		A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	0.010000	0.407960	69(CCTTTTATATCT,+,0.00)
mm_152724.1	chr19	18630808	18631008	-	1	NA	NA	NA	905	NM_017375	20409	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.000000	0.333333	-55(ACTTTTATAGCT,+,0.00)
mm_139151.1	chr17	47538592	47538792	+	1	NA	NA	NA	33641	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.000000	0.348259	
mm_5651.1	chr1	40534292	40534492	-	1	NA	NA	NA	19030	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.000000	0.492537	
mm_52310.1	chr6	108828511	108828711	+	1	NA	NA	NA	-30	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.150000	0.771144	24(TTCCTTAAAGGG,-,0.00),26(CCTTAAAGGGGA,+,0.00)
mm_162761.1	chr10	61881856	61882056	-	1	NA	NA	NA	97152	NM_001304757	12817	Mm.300931	NM_007731	ENSMUSG00000058806	Col13a1	-	collagen, type XIII, alpha 1	protein-coding	0.025000	0.552239	
mm_133908.1	chr16	97550769	97550969	+	1	NA	NA	NA	14786	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.005000	0.547264	
mm_84746.1	chr9	75409209	75409409	-	1	NA	NA	NA	50	NM_027418	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.080000	0.656716	
mm_148963.1	chr19	7494345	7494545	+	1	NA	NA	NA	7	NM_146091	109168	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0.130000	0.701493	
mm_109925.1	chr12	8640924	8641124	-	1	NA	NA	NA	-33110	NM_001160221	80913	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.090000	0.661692	
mm_3343.1	chr1	137971078	137971278	+	1	NA	NA	NA	4539	NR_029820	723890		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA	0.000000	0.323383	
mm_118651.1	chr14	21745399	21745599	+	1	NA	NA	NA	-2620	NM_013849	27389	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.015000	0.527363	
mm_133549.1	chr16	91372725	91372925	+	1	NA	NA	NA	42	NM_001110498	15976	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.095000	0.671642	
mm_36749.1	chr4	101179793	101179993	-	1	NA	NA	NA	85389	NM_146145	16451	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.020000	0.393035	-32(CCATTTATATCC,+,0.00)
mm_126292.1	chr15	79347491	79347691	+	1	NA	NA	NA	71	NM_010755	17133	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.100000	0.611940	
mm_126213.1	chr15	78899749	78899949	+	1	NA	NA	NA	81	NM_009164	20401	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	0.085000	0.736318	
mm_11482.1	chr2	32385622	32385822	+	1	NA	NA	NA	2017	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.020000	0.472637	
mm_92158.1	chr10	67537605	67537805	-	1	NA	NA	NA	-164	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.070000	0.646766	
mm_144906.1	chr18	37400766	37400966	+	1	NA	NA	NA	11	NM_053134	93880	Mm.286019	NM_053134	ENSMUSG00000051242	Pcdhb9	Pcdhb4C|PcdhbI	protocadherin beta 9	protein-coding	0.015000	0.398010	
mm_59606.1	chr7	28140908	28141108	+	1	NA	NA	NA	11542	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.000000	0.517413	
mm_53032.1	chr6	124512556	124512756	+	1	NA	NA	NA	35	NM_023143	50909	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	0.010000	0.477612	
mm_71155.1	chr8	40124564	40124764	+	1	NA	NA	NA	103123	NR_035426	100316806		NR_035426	ENSMUSG00000080653	Mir669e	Mirn669e|mmu-mir-669e	microRNA 669e	ncRNA	0.005000	0.452736	55(TCTTTAAAGGTC,+,0.00)
mm_15480.1	chr2	157561624	157561824	+	1	NA	NA	NA	1646	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.040000	0.631841	61(CCCCAGAAAAGC,-,0.00)
mm_24995.1	chr3	97158990	97159190	+	1	NA	NA	NA	313	NM_019800	66659	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	0.065000	0.626866	
mm_54582.1	chr6	38124449	38124649	-	1	NA	NA	NA	37	NM_080467	140494	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	0.005000	0.472637	
mm_16637.1	chr2	5925170	5925370	-	1	NA	NA	NA	17522	NM_001081131	209692	Mm.222517	NM_001081131	ENSMUSG00000025815	Dhtkd1	C330018I04Rik	dehydrogenase E1 and transketolase domain containing 1	protein-coding	0.010000	0.298507	47(AGCTATATAAGA,-,0.00)
mm_140701.1	chr17	14398836	14399036	-	1	NA	NA	NA	6	NR_027986	74917	Mm.32228	NM_183107		4930474M22Rik	-	RIKEN cDNA 4930474M22 gene	ncRNA	0.015000	0.412935	-44(TTCTTTTAAAGC,-,0.00),-43(TCTTTTAAAGCT,+,0.00)
mm_21247.1	chr2	156176702	156176902	-	1	NA	NA	NA	2778	NM_001291115	170791	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.005000	0.343284	
mm_48012.1	chr5	136165148	136165348	-	1	NA	NA	NA	5408	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.010000	0.407960	
mm_93977.1	chr10	127341499	127341699	-	1	NA	NA	NA	-20	NM_010296	14632	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	0.050000	0.731343	
mm_145836.1	chr18	65442287	65442487	+	1	NA	NA	NA	11390	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.442786	
mm_77637.1	chr8	124273861	124274061	-	1	NA	NA	NA	42567	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0.010000	0.557214	
mm_678.1	chr1	40466198	40466398	+	1	NA	NA	NA	292	NM_008365	16182	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0.005000	0.522388	
mm_5121.1	chr1	9298406	9298606	-	1	NA	NA	NA	1371	NM_001290390	71096	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	0.025000	0.577114	
mm_172713.1	chr8	70477443	70477643	+	1	NA	NA	NA	-600	NM_178771	234378	Mm.187090	NM_172052	ENSMUSG00000055707	Klhl26	C630013N10Rik|Klkl26	kelch-like 26	protein-coding	0.025000	0.547264	
mm_149540.1	chr19	12564377	12564577	+	1	NA	NA	NA	-9033	NM_001346545	107373	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	0.000000	0.393035	
mm_57604.1	chr6	128009139	128009339	-	1	NA	NA	NA	121617	NM_026743	68498	Mm.174368	NM_026743	ENSMUSG00000030351	Tspan11	1110014F12Rik|AU067806	tetraspanin 11	protein-coding	0.010000	0.442786	-7(TTTTTTAAGGTC,+,0.00)
mm_23553.1	chr3	62159100	62159300	+	1	NA	NA	NA	-179577	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	0.045000	0.507463	
mm_168941.1	chr12	71302081	71302281	-	1	NA	NA	NA	-7703	NM_021532	59036	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	0.025000	0.497512	
mm_163432.1	chr12	85281242	85281442	+	1	NA	NA	NA	-907	NM_025421	66204	Mm.311985	NM_025421	ENSMUSG00000008822	Acyp1	1110039O14Rik|AI325944	acylphosphatase 1, erythrocyte (common) type	protein-coding	0.005000	0.452736	
mm_276.1	chr1	21240537	21240737	+	1	NA	NA	NA	52	NM_010356	14859	Mm.394593	NM_010356	ENSMUSG00000025934	Gsta3	Gst2-3	glutathione S-transferase, alpha 3	protein-coding	0.030000	0.417910	-6(CTTTTTAGAGGG,+,0.00)
mm_84501.1	chr9	66919082	66919282	-	1	NA	NA	NA	523	NM_173413	235442	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.060000	0.562189	
mm_1607.1	chr1	74382258	74382458	+	1	NA	NA	NA	7155	NM_013612	18173	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.010000	0.557214	
mm_144094.1	chr18	3337812	3338012	+	1	NA	NA	NA	-323	NM_001110852	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.085000	0.522388	
mm_149834.1	chr19	24875565	24875765	+	1	NA	NA	NA	-13823	NM_175013	226041	Mm.105222	NM_175013	ENSMUSG00000041731	Pgm5	4833423B07|9530034F03Rik|D830025G17|aciculin	phosphoglucomutase 5	protein-coding	0.075000	0.517413	
mm_53278.1	chr6	128662288	128662488	+	1	NA	NA	NA	3	NM_053165	94071	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	0.005000	0.442786	-35(CAGTATATAAGG,-,0.00)
mm_173157.1	chrX	35860090	35860290	+	1	NA	NA	NA	-28642	NM_001009947	75974	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	0.050000	0.577114	
mm_100279.1	chr11	117790808	117791008	+	1	NA	NA	NA	-6752	NM_029964	77727	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	-	RIKEN cDNA 6030468B19 gene	protein-coding	0.035000	0.611940	
mm_55132.1	chr6	51059624	51059824	-	1	NA	NA	NA	210186	NR_029719	387166		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.015000	0.393035	
mm_49716.1	chr6	34486175	34486375	+	1	NA	NA	NA	9919	NM_007563	12183	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	0.040000	0.587065	
mm_140836.1	chr17	23670689	23670889	-	1	NA	NA	NA	-2819	NM_181821	353502	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	0.015000	0.542289	
mm_123192.1	chr14	57925375	57925575	-	1	NA	NA	NA	-35213	NM_029492	75965	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|ENSMUSG00000055956|HK11	zinc finger, DHHC domain containing 20	protein-coding	0.015000	0.502488	39(CTGTCTAAAAGC,-,0.00)
mm_34899.1	chr4	155630427	155630627	+	1	NA	NA	NA	5658	NM_007661	12537	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	0.015000	0.417910	
mm_19767.1	chr2	105399518	105399718	-	1	NA	NA	NA	-299	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0.030000	0.522388	
mm_172838.1	chr9	26408134	26408334	-	1	NA	NA	NA	-325574	NM_001310766	76898	Mm.218788	NM_029792	ENSMUSG00000045994	B3gat1	0710007K08Rik|AI846286|GlcAT-P|Glcatp|Hnk1	beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	protein-coding	0.060000	0.646766	
mm_89889.1	chr10	109137196	109137396	+	1	NA	NA	NA	-126321	NM_001252341	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding	0.005000	0.442786	
mm_137398.1	chr17	25828956	25829156	+	1	NA	NA	NA	13	NM_028101	72106	Mm.277599	NM_028101	ENSMUSG00000025736	Jmjd8	2610003J06Rik	jumonji domain containing 8	protein-coding	0.070000	0.582090	
mm_56082.1	chr6	87287175	87287375	-	1	NA	NA	NA	48500	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.010000	0.512438	
mm_92841.1	chr10	81507983	81508183	-	1	NA	NA	NA	-7946	NM_010102	13611	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0.030000	0.582090	
mm_87367.1	chr10	44016045	44016245	+	1	NA	NA	NA	-11299	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.005000	0.467662	
mm_54761.1	chr6	41196914	41197114	-	1	NA	NA	NA	-105258	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.000000	0.293532	
mm_74242.1	chr8	124792935	124793135	+	1	NA	NA	NA	16	NM_198632	330863	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	0.130000	0.761194	
mm_99865.1	chr11	109397288	109397488	+	1	NA	NA	NA	-28558	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.015000	0.557214	
mm_145374.1	chr18	56733975	56734175	+	1	NA	NA	NA	26262	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.010000	0.527363	
mm_158552.1	chrX	147428696	147428896	-	1	NA	NA	NA	396	NM_001306059	16165	Mm.368330	NM_008356	ENSMUSG00000031289	Il13ra2	CD213a2|IL-13R-alpha-2	interleukin 13 receptor, alpha 2	protein-coding	0.005000	0.308458	
mm_115970.1	chr13	24059201	24059401	-	1	NA	NA	NA	-68087	NM_145399	214189	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.000000	0.497512	
mm_159881.1	chr6	17693203	17693403	+	1	NA	NA	NA	-691	NM_001289624	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.015000	0.308458	
mm_57936.1	chr6	134791233	134791433	-	1	NA	NA	NA	1295	NM_130447	70686	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	0.020000	0.442786	-34(GGGTTTTTAAAC,-,0.00),-32(GTTTTTAAACCT,+,0.00),18(TGCTTTTAAAGA,-,0.00),19(GCTTTTAAAGAT,+,0.00)
mm_127148.1	chr15	98541287	98541487	+	1	NA	NA	NA	-7118	NM_001289440	69612	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	0.015000	0.437811	
mm_34740.1	chr4	152241873	152242073	+	1	NA	NA	NA	-32389	NM_178406	100129	Mm.23235	NM_178406	ENSMUSG00000042804	Gpr153	1110065N12Rik|AI449320|PGR1	G protein-coupled receptor 153	protein-coding	0.040000	0.582090	
mm_119075.1	chr14	30880030	30880230	+	1	NA	NA	NA	873	NM_181390	66175	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0.025000	0.542289	
mm_84934.1	chr9	82928778	82928978	-	1	NA	NA	NA	46611	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.000000	0.333333	
mm_89650.1	chr10	97479376	97479576	+	1	NA	NA	NA	-24	NM_001190451	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.015000	0.388060	
mm_7887.1	chr1	133133482	133133682	-	1	NA	NA	NA	2416	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.000000	0.427861	
mm_69408.1	chr7	132323479	132323679	-	1	NA	NA	NA	-6424	NM_029935	77590	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.015000	0.507463	
mm_64957.1	chr7	16500229	16500429	-	1	NA	NA	NA	-23549	NM_008718	18142	Mm.145821	NM_008718	ENSMUSG00000001988	Npas1	MOP5|bHLHe11	neuronal PAS domain protein 1	protein-coding	0.000000	0.462687	
mm_95243.1	chr11	44617554	44617754	+	1	NA	NA	NA	-446	NM_001290711	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.020000	0.432836	
mm_142443.1	chr17	45573167	45573367	-	1	NA	NA	NA	-6	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.090000	0.666667	-81(CTCCTTTAAGGC,-,0.00),-80(TCCTTTAAGGCG,+,0.00),-79(CCTTTAAGGCGG,+,0.00),-33(CCTTATATAGGG,+,0.00),-33(CCTTATATAGGG,-,0.00)
mm_10468.1	chr2	14331020	14331220	+	1	NA	NA	NA	-57278	NM_001012305	277468	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0.025000	0.417910	
mm_148695.1	chr19	5741773	5741973	+	1	NA	NA	NA	969	NM_008520	16998	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0.105000	0.726368	
mm_88984.1	chr10	81564004	81564204	+	1	NA	NA	NA	4660	NM_001276288	14797	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.030000	0.582090	
mm_151659.1	chr19	4125780	4125980	-	1	NA	NA	NA	-22	NM_016666	11632	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.090000	0.706468	
mm_149074.1	chr19	8873472	8873672	+	1	NA	NA	NA	2013	NM_146093	225896	Mm.27839	NM_146093	ENSMUSG00000071655	Ubxn1	2B28|4930455J02Rik|D19Ertd721e|T25529	UBX domain protein 1	protein-coding	0.050000	0.517413	
mm_160300.1	chr7	135410355	135410555	+	1	NA	NA	NA	88	NM_183193	270004	Mm.132547	NM_183193	ENSMUSG00000048377	Foxi2	B130055A05Rik	forkhead box I2	protein-coding	0.075000	0.686567	
mm_56943.1	chr6	119948595	119948795	-	1	NA	NA	NA	45997	NM_001166381	19365	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.005000	0.517413	
mm_99190.1	chr11	100939764	100939964	+	1	NA	NA	NA	-324	NM_011486	20848	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.055000	0.582090	-35(CACTTTAAATGC,-,0.00),-33(CTTTAAATGCCC,+,0.00)
mm_170789.1	chr2	175077808	175078008	+	1	NA	NA	NA	-10139	NM_001085546	664987		NM_001085546	ENSMUSG00000078905	Gm14393	OTTMUSG00000016546	predicted gene 14393	protein-coding	0.020000	0.477612	
mm_132631.1	chr16	38931793	38931993	+	1	NA	NA	NA	29548	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.015000	0.467662	
mm_139827.1	chr17	68836978	68837178	+	1	NA	NA	NA	-58	NM_001206661	622645	Mm.86422	NM_001206661	ENSMUSG00000095407	Tmem200c	EG622645|Gm6338	transmembrane protein 200C	protein-coding	0.090000	0.746269	
mm_172125.1	chr6	3201267	3201467	+	1	NA	NA	NA	-87152	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.065000	0.517413	
mm_51700.1	chr6	86609468	86609668	+	1	NA	NA	NA	-18606	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.010000	0.537313	
mm_113613.1	chr13	41473670	41473870	+	1	NA	NA	NA	13590	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.010000	0.452736	
mm_85013.1	chr9	87731068	87731268	-	1	NA	NA	NA	92	NM_023814	76365	Mm.158789	NM_023814	ENSMUSG00000032419	Tbx18	2810012F10Rik|2810404D13Rik	T-box18	protein-coding	0.030000	0.502488	
mm_138402.1	chr17	35059064	35059264	+	1	NA	NA	NA	129	NM_016765	51793	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	0.060000	0.616915	
mm_33642.1	chr4	133011388	133011588	+	1	NA	NA	NA	-18	NM_146155	230793	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.145000	0.751244	
mm_128430.1	chr15	50417349	50417549	-	1	NA	NA	NA	471600	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.373134	
mm_136131.1	chr16	86472812	86473012	-	1	NA	NA	NA	-571787	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0.015000	0.417910	
mm_167502.1	chr9	13297876	13298076	+	1	NA	NA	NA	51020	NM_025534	66396	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.005000	0.542289	
mm_131895.1	chr16	23237264	23237464	+	1	NA	NA	NA	11343	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.025000	0.517413	
mm_100060.1	chr11	115307060	115307260	+	1	NA	NA	NA	-3	NM_172801	237987	Mm.44542	NM_172801	ENSMUSG00000050201	Otop2	4732464P15	otopetrin 2	protein-coding	0.020000	0.592040	
mm_19890.1	chr2	114050500	114050700	-	1	NA	NA	NA	2275	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.015000	0.482587	
mm_44056.1	chr5	148264810	148265010	+	1	NA	NA	NA	127905	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.025000	0.572139	
mm_34808.1	chr4	154878000	154878200	+	1	NA	NA	NA	8515	NM_013783	27390	Mm.116944	NM_013783	ENSMUSG00000058183	Mmel1	Mell1|NEP2|NEPII|Nl1|SEP	membrane metallo-endopeptidase-like 1	protein-coding	0.035000	0.537313	
mm_129356.1	chr15	77945625	77945825	-	1	NA	NA	NA	10997	NM_001168260	239554	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	0.025000	0.597015	
mm_42360.1	chr5	114911792	114911992	+	1	NA	NA	NA	-11348	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.015000	0.477612	
mm_48506.1	chr5	142817561	142817761	-	1	NA	NA	NA	-274	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.050000	0.507463	
mm_86522.1	chr10	7758598	7758798	+	1	NA	NA	NA	22219	NM_145418	215751	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	0.005000	0.313433	79(CCATTAATAGGG,+,0.00)
mm_73598.1	chr8	109998734	109998934	+	1	NA	NA	NA	8398	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.020000	0.507463	
mm_123798.1	chr14	70520003	70520203	-	1	NA	NA	NA	157	NM_009755	12153	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.150000	0.796020	
mm_138082.1	chr17	33995927	33996127	+	1	NA	NA	NA	4306	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.005000	0.393035	
mm_93803.1	chr10	120898932	120899132	-	1	NA	NA	NA	-61	NM_177092	320183	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	0.145000	0.746269	
mm_34419.1	chr4	145274074	145274274	+	1	NA	NA	NA	-27304	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.010000	0.542289	
mm_85853.1	chr9	110684034	110684234	-	1	NA	NA	NA	27631	NM_028312	72654	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.005000	0.492537	-33(TCCTTTATAAGT,-,0.00)
mm_23025.1	chr3	34640123	34640323	+	1	NA	NA	NA	1759	NR_035433	100316679		NR_035433	ENSMUSG00000104797	Mir1897	Mirn1897|mmu-mir-1897	microRNA 1897	ncRNA	0.020000	0.388060	
mm_88061.1	chr10	67644345	67644545	+	1	NA	NA	NA	-95490	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.000000	0.447761	
mm_45326.1	chr5	65492729	65492929	-	1	NA	NA	NA	6	NM_133697	68552	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.120000	0.696517	
mm_159799.1	chr5	112465894	112466094	-	1	NA	NA	NA	16568	NM_001177504	625464	Mm.389676	NM_001177504	ENSMUSG00000072722	Gm6588	EG625464	predicted gene 6588	protein-coding	0.030000	0.606965	
mm_53851.1	chr6	149141559	149141759	+	1	NA	NA	NA	146	NM_177101	320204	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	0.050000	0.492537	69(CCCTTTAAAGTA,+,0.00)
mm_8603.1	chr1	156034761	156034961	-	1	NA	NA	NA	-44	NM_001160019	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.005000	0.447761	
mm_15904.1	chr2	164968191	164968391	+	1	NA	NA	NA	303	NM_020333	57138	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	0.145000	0.736318	
mm_9702.1	chr1	179139321	179139521	-	1	NA	NA	NA	378582	NM_027188	69726	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.005000	0.343284	-66(GGCTTTAAAATC,-,0.00),9(TTCTCTATAAGA,-,0.00),11(CTCTATAAGAGA,-,0.00)
mm_29139.1	chr3	105825700	105825900	-	1	NA	NA	NA	10233	NR_045845	433637	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	0.005000	0.522388	
mm_170644.1	chr19	9422421	9422621	+	1	NA	NA	NA	136727	NR_073559	619371	Mm.316894	NM_001030317		Stxbp3-ps	Munc18c(L)|Stxbp3-1|Stxbp3b	syntaxin-binding protein 3, pseudogene	pseudo	0.015000	0.522388	-31(CCCCTTATAAGC,-,0.00),-29(CCTTATAAGCAC,+,0.00)
mm_109592.1	chr12	112633876	112634076	+	1	NA	NA	NA	-10852	NM_001161737	30954	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.020000	0.547264	
mm_132127.1	chr16	31754677	31754877	+	1	NA	NA	NA	427	NM_001252436	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.025000	0.502488	
mm_110016.1	chr12	16646897	16647097	-	1	NA	NA	NA	-6473	NM_008747	18217	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT2R|NTRL	neurotensin receptor 2	protein-coding	0.020000	0.577114	
mm_10111.1	chr2	3713342	3713542	+	1	NA	NA	NA	-16	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.130000	0.716418	
mm_68517.1	chr7	111735956	111736156	-	1	NA	NA	NA	43921	NM_173739	233733	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	0.000000	0.457711	47(TTCTTTAAAAGC,-,0.00),48(TCTTTAAAAGCT,+,0.00)
mm_61924.1	chr7	90160439	90160639	+	1	NA	NA	NA	30307	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.005000	0.343284	62(CTTTTTAAAAAG,+,0.00),62(CTTTTTAAAAAG,-,0.00)
mm_37611.1	chr4	126967896	126968096	-	1	NA	NA	NA	-73	NM_001114399	67785	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0.140000	0.815920	
mm_105289.1	chr11	102447562	102447762	-	1	NA	NA	NA	1	NM_199200	217219	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0.130000	0.781095	
mm_49656.1	chr6	31123138	31123338	+	1	NA	NA	NA	-60145	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.010000	0.417910	
mm_13272.1	chr2	99454448	99454648	+	1	NA	NA	NA	1986891	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.000000	0.333333	
mm_8684.1	chr1	156939484	156939684	-	1	NA	NA	NA	42	NM_001159968	78255	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0.185000	0.796020	
mm_39116.1	chr4	154936507	154936707	-	1	NA	NA	NA	-8530	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.010000	0.412935	60(TGCTTTTAATGC,-,0.00)
mm_108490.1	chr12	83672746	83672946	+	1	NA	NA	NA	-15717	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.020000	0.427861	
mm_136280.1	chr16	91069051	91069251	-	1	NA	NA	NA	-6	NM_028905	74387	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.020000	0.547264	
mm_107942.1	chr12	71889618	71889818	+	1	NA	NA	NA	175	NM_001286452	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.030000	0.582090	
mm_8957.1	chr1	164537465	164537665	-	1	NA	NA	NA	-79210	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.005000	0.552239	
mm_100538.1	chr11	120633640	120633840	+	1	NA	NA	NA	-193	NM_010756	17134	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.125000	0.711443	
mm_15407.1	chr2	156749082	156749282	+	1	NA	NA	NA	-26282	NM_172118	98932	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0.040000	0.661692	
mm_84045.1	chr9	58025038	58025238	-	1	NA	NA	NA	-7136	NM_001243265	330951	Mm.406992	NM_001243265		Gm16130	E330033L03|OTTMUSG00000030814	predicted gene 16130	protein-coding	0.015000	0.562189	
mm_26387.1	chr3	142570440	142570640	+	1	NA	NA	NA	10044	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.005000	0.422886	
mm_79925.1	chr9	65630595	65630795	+	1	NA	NA	NA	113	NM_028030	71973	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	0.105000	0.716418	
mm_30399.1	chr3	152252739	152252939	-	1	NA	NA	NA	13481	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.030000	0.402985	
mm_24935.1	chr3	96560153	96560353	+	1	NA	NA	NA	2296	NM_023719	56338	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.025000	0.512438	
mm_24668.1	chr3	94591217	94591417	+	1	NA	NA	NA	-8601	NM_029721	76742	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.010000	0.482587	
mm_6350.1	chr1	71647994	71648194	-	1	NA	NA	NA	5140	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.030000	0.497512	
mm_10209.1	chr2	5413147	5413347	+	1	NA	NA	NA	33857	NR_030601	100124465		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.010000	0.452736	
mm_3012.1	chr1	133363504	133363704	+	1	NA	NA	NA	32	NM_175443	214253	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	0.090000	0.671642	
mm_1973.1	chr1	86522618	86522818	+	1	NA	NA	NA	-4018	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.025000	0.621891	
mm_20074.1	chr2	120563650	120563850	-	1	NA	NA	NA	81	NM_011743	20402	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|H3a|Sh3bp3|Znf106|sirm	zinc finger protein 106	protein-coding	0.140000	0.736318	
mm_75719.1	chr8	69027572	69027772	-	1	NA	NA	NA	-61064	NM_007509	11966	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0.000000	0.482587	
mm_47697.1	chr5	129779144	129779344	-	1	NA	NA	NA	8009	NM_133900	100678	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	0.045000	0.646766	
mm_60748.1	chr7	45460982	45461182	+	1	NA	NA	NA	-1196	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.045000	0.611940	
mm_76813.1	chr8	104442850	104443050	-	1	NA	NA	NA	97	NM_001013380	234663	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	0.150000	0.741294	
mm_72675.1	chr8	84911242	84911442	+	1	NA	NA	NA	-1993	NR_103491	100503676	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	0.010000	0.482587	
mm_123998.1	chr14	75834733	75834933	-	1	NA	NA	NA	10131	NR_045294	100043189	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.030000	0.512438	
mm_169220.1	chr13	66744758	66744958	-	1	NA	NA	NA	160492	NM_026219	67530	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	0.010000	0.527363	
mm_42503.1	chr5	115491879	115492079	+	1	NA	NA	NA	-7495	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.065000	0.606965	
mm_98442.1	chr11	94941926	94942126	+	1	NA	NA	NA	5802	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.030000	0.616915	
mm_39674.1	chr5	25515958	25516158	+	1	NA	NA	NA	-9	NM_198621	242891	Mm.291521	NM_198621	ENSMUSG00000038044	Cct8l1	Gm443	chaperonin containing TCP1, subunit 8 (theta)-like 1	protein-coding	0.015000	0.497512	
mm_53397.1	chr6	129588278	129588478	+	1	NA	NA	NA	-3433	NM_010654	16643	Mm.391515	NM_010654	ENSMUSG00000030165	Klrd1	CD94	killer cell lectin-like receptor, subfamily D, member 1	protein-coding	0.005000	0.383085	
mm_136671.1	chr17	6106794	6106994	+	1	NA	NA	NA	64	NM_001103181	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.120000	0.781095	
mm_37807.1	chr4	130818744	130818944	-	1	NA	NA	NA	26307	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.045000	0.641791	
mm_3247.1	chr1	136131272	136131472	+	1	NA	NA	NA	-29	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.105000	0.751244	
mm_3485.1	chr1	150105589	150105789	+	1	NA	NA	NA	5658	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.427861	
mm_38085.1	chr4	134154371	134154571	-	1	NA	NA	NA	-25718	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.005000	0.492537	
mm_122127.1	chr14	31156031	31156231	-	1	NA	NA	NA	12510	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.010000	0.492537	
mm_55170.1	chr6	51920158	51920358	-	1	NA	NA	NA	92291	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.010000	0.358209	
mm_23701.1	chr3	68761343	68761543	+	1	NA	NA	NA	70019	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.025000	0.537313	
mm_136611.1	chr17	5334727	5334927	+	1	NA	NA	NA	83940	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.015000	0.557214	
mm_93043.1	chr10	88380068	88380268	-	1	NA	NA	NA	756	NM_001004164	432486	Mm.335190	NM_001004164	ENSMUSG00000035311	Gnptab	EG432486|mKIAA1208	N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits	protein-coding	0.020000	0.492537	
mm_169541.1	chr15	100421271	100421471	-	1	NA	NA	NA	1684	NM_001146161	18174	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0.020000	0.502488	
mm_25980.1	chr3	133310019	133310219	+	1	NA	NA	NA	9	NM_146141	74776	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0.170000	0.791045	
mm_104855.1	chr11	99349911	99350111	-	1	NA	NA	NA	1107	NM_010666	16675	Mm.440476	NM_010666	ENSMUSG00000017588	Krt27	CK-27|Krt1-c29|mIRSa3.1|stpm	keratin 27	protein-coding	0.030000	0.437811	
mm_91169.1	chr10	20697689	20697889	-	1	NA	NA	NA	27289	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.015000	0.532338	
mm_28398.1	chr3	90213504	90213704	-	1	NA	NA	NA	43	NM_001190258	100043813	Mm.270283	NM_001190258	ENSMUSG00000050621	Rps27rt	ENSMUSG00000050621|Gm9846|Rps27l2	ribosomal protein S27, retrogene	protein-coding	0.075000	0.562189	
mm_43284.1	chr5	133474980	133475180	+	1	NA	NA	NA	-624668	NM_030719	80909	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding	0.050000	0.517413	
mm_142870.1	chr17	51815730	51815930	-	1	NA	NA	NA	-3776	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.000000	0.308458	
mm_46095.1	chr5	92347176	92347376	-	1	NA	NA	NA	1613	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.020000	0.562189	
mm_7785.1	chr1	131281798	131281998	-	1	NA	NA	NA	-2335	NM_019777	56489	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.010000	0.398010	
mm_45140.1	chr5	49024575	49024775	-	1	NA	NA	NA	-135118	NM_030265	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.000000	0.278607	
mm_73786.1	chr8	117157859	117158059	+	1	NA	NA	NA	-176	NM_001081151	209239	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0.140000	0.696517	-13(GCTCCTTAAAGG,-,0.00),-12(CTCCTTAAAGGC,-,0.00),-10(CCTTAAAGGCGC,+,0.00)
mm_76863.1	chr8	105471384	105471584	-	1	NA	NA	NA	-62	NM_026481	67971	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0.060000	0.641791	
mm_22597.1	chr3	13946274	13946474	+	1	NA	NA	NA	2	NM_001163330	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.020000	0.457711	
mm_69409.1	chr7	132365765	132365965	-	1	NA	NA	NA	-48710	NM_029935	77590	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.015000	0.507463	
mm_27901.1	chr3	79479576	79479776	-	1	NA	NA	NA	88003	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.005000	0.368159	
mm_156094.1	chrX	112311257	112311457	+	1	NA	NA	NA	5	NM_026565	68117	Mm.161014	NM_026565	ENSMUSG00000025525	Apool	6720473G16Rik|9430083G14Rik|E130106L15Rik	apolipoprotein O-like	protein-coding	0.050000	0.552239	
mm_63314.1	chr7	126863334	126863534	+	1	NA	NA	NA	1462	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	0.005000	0.547264	
mm_94312.1	chr11	4223529	4223729	+	1	NA	NA	NA	5378	NM_028022	71962	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik	GATS protein-like 3	protein-coding	0.010000	0.631841	-16(CCCTAGAAAAGC,-,0.00)
mm_151978.1	chr19	5828116	5828316	-	1	NA	NA	NA	17262	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.010000	0.383085	
mm_46355.1	chr5	103026850	103027050	-	1	NA	NA	NA	31442	NM_001310686	26414	Mm.39253	NM_009158	ENSMUSG00000046709	Mapk10	C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding	0.030000	0.577114	
mm_57570.1	chr6	127130092	127130292	-	1	NA	NA	NA	-19197	NR_040274	77558	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.010000	0.378109	11(TCCTATTTAAAG,-,0.00)
mm_7447.1	chr1	120120966	120121166	-	1	NA	NA	NA	30	NM_007830	13167	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	0.085000	0.606965	17(TGCTTTTAAAGG,-,0.00),18(GCTTTTAAAGGC,+,0.00),18(GCTTTTAAAGGC,-,0.00),19(CTTTTAAAGGCG,+,0.00)
mm_31307.1	chr4	46077075	46077275	+	1	NA	NA	NA	37953	NM_021883	21916	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0.010000	0.472637	-45(TCATAAATAGCC,+,0.00)
mm_54706.1	chr6	39637775	39637975	-	1	NA	NA	NA	45292	NM_026612	68198	Mm.29415	NM_026612	ENSMUSG00000002416	Ndufb2	1810011O01Rik|8kDa|AGGG|AI325567|CI-AGGG	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2	protein-coding	0.005000	0.442786	4(ACTTCTAAAAGG,-,0.00),39(CCTTTTAAATAG,+,0.00)
mm_116504.1	chr13	45001737	45001937	-	1	NA	NA	NA	259	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.135000	0.726368	
mm_151718.1	chr19	4793780	4793980	-	1	NA	NA	NA	21	NM_009032	19653	Mm.426069	NM_009032	ENSMUSG00000094936	Rbm4	4921506I22Rik|Lark1|Mlark|Rbm4a|lark	RNA binding motif protein 4	protein-coding	0.065000	0.552239	
mm_146371.1	chr18	82584617	82584817	+	1	NA	NA	NA	30209	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.020000	0.611940	
mm_77970.1	chr9	7792628	7792828	+	1	NA	NA	NA	8338	NR_049191	100885830		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0.025000	0.457711	
mm_76918.1	chr8	105933091	105933291	-	1	NA	NA	NA	671	NM_023182	109660	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.010000	0.547264	
mm_54809.1	chr6	42323234	42323434	-	1	NA	NA	NA	1306	NM_001286584	76156	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	0.020000	0.527363	
mm_63098.1	chr7	122415617	122415817	+	1	NA	NA	NA	126592	NM_008855	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.020000	0.447761	-34(TGTTATAAAAGG,-,0.00)
mm_164461.1	chr16	58499752	58499952	-	1	NA	NA	NA	23460	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.015000	0.512438	
mm_71812.1	chr8	68884249	68884449	+	1	NA	NA	NA	3794	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.000000	0.442786	
mm_156337.1	chrX	139009698	139009898	+	1	NA	NA	NA	75438	NM_177920	331535	Mm.211704	NM_177920	ENSMUSG00000031271	Serpina7	C730040N12Rik|Tbg	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7	protein-coding	0.010000	0.383085	
mm_5556.1	chr1	38664929	38665129	-	1	NA	NA	NA	-37785	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.030000	0.582090	
mm_22226.1	chr2	174428599	174428799	-	1	NA	NA	NA	10340	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.030000	0.512438	
mm_14600.1	chr2	136060690	136060890	+	1	NA	NA	NA	2863	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.010000	0.507463	
mm_146325.1	chr18	80707166	80707366	+	1	NA	NA	NA	907	NM_001164111	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.030000	0.467662	
mm_85970.1	chr9	112156367	112156567	-	1	NA	NA	NA	29482	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.010000	0.477612	
mm_94494.1	chr11	7063303	7063503	+	1	NA	NA	NA	-86	NM_009622	432530	Mm.259733	NM_009622	ENSMUSG00000020431	Adcy1	AC1|D11Bwg1392e|I-AC|brl|mKIAA4070	adenylate cyclase 1	protein-coding	0.180000	0.825871	
mm_139764.1	chr17	64601187	64601387	+	1	NA	NA	NA	-362	NM_008549	17158	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.120000	0.701493	
mm_106538.1	chr11	120578754	120578954	-	1	NA	NA	NA	2766	NM_133796	192662	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.010000	0.557214	
mm_59020.1	chr7	19271851	19272051	+	1	NA	NA	NA	-97	NM_001282022	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.060000	0.616915	-78(GCGCCTTAAAGG,-,0.00),-77(CGCCTTAAAGGG,-,0.00),-76(GCCTTAAAGGGG,+,0.00),-75(CCTTAAAGGGGC,+,0.00),-34(GCGTTTAAAAGG,-,0.00)
mm_2720.1	chr1	128167835	128168035	+	1	NA	NA	NA	-34426	NR_029543	387147		NR_029543	ENSMUSG00000065520	Mir128-1	Mirn128|Mirn128-1|Mirn128a|mir-128-1	microRNA 128-1	ncRNA	0.000000	0.283582	
mm_25349.1	chr3	106788665	106788865	+	1	NA	NA	NA	1384	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.005000	0.393035	
mm_16010.1	chr2	167383968	167384168	+	1	NA	NA	NA	-34890	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.030000	0.422886	-83(CTATTTATAGGT,+,0.00)
mm_48222.1	chr5	137624974	137625174	-	1	NA	NA	NA	4	NM_027708	71176	Mm.474695	NM_027708	ENSMUSG00000089984	Fbxo24	4933422D21Rik|Fbx24	F-box protein 24	protein-coding	0.015000	0.631841	
mm_73158.1	chr8	94995589	94995789	+	1	NA	NA	NA	11290	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.015000	0.552239	
mm_30034.1	chr3	135691248	135691448	-	1	NA	NA	NA	199	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.175000	0.830846	
mm_71321.1	chr8	44935302	44935502	+	1	NA	NA	NA	-14806	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.055000	0.616915	
mm_111129.1	chr12	81475252	81475452	-	1	NA	NA	NA	9499	NR_132135	66272	Mm.439970	NM_025461	ENSMUSG00000091803	Cox16	1810020G14Rik|1810055I05Rik|BB388670	cytochrome c oxidase assembly protein 16	protein-coding	0.000000	0.363184	
mm_36041.1	chr4	57249018	57249218	-	1	NA	NA	NA	52719	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.020000	0.487562	
mm_26438.1	chr3	142621182	142621382	+	1	NA	NA	NA	619	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.005000	0.398010	
mm_156748.1	chrX	159988137	159988337	+	1	NA	NA	NA	-196	NM_001163085	270672	Mm.386889	NM_001163085	ENSMUSG00000031303	Map3k15	BC031147|MEKK15	mitogen-activated protein kinase kinase kinase 15	protein-coding	0.140000	0.786070	
mm_14813.1	chr2	146101577	146101777	+	1	NA	NA	NA	-120320	NM_016889	53626	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	0.015000	0.487562	82(GCTTTAATGGGA,+,0.00)
mm_41273.1	chr5	89236184	89236384	+	1	NA	NA	NA	221614	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.005000	0.278607	-75(CCTTTAATGAAC,+,0.00)
mm_64843.1	chr7	13009944	13010144	-	1	NA	NA	NA	-244	NM_001024699	232879	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	0.060000	0.587065	
mm_127580.1	chr15	102326042	102326242	+	1	NA	NA	NA	26	NM_027044	56612	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	0.095000	0.601990	
mm_153515.1	chr19	41474830	41475030	-	1	NA	NA	NA	-50322	NM_001326287	627352	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0.005000	0.422886	
mm_154883.1	chrX	20703809	20704009	+	1	NA	NA	NA	0	NM_145628	236733	Mm.34489	NM_145628	ENSMUSG00000031066	Usp11	6230415D12Rik|mKIAA4085	ubiquitin specific peptidase 11	protein-coding	0.075000	0.606965	
mm_125340.1	chr15	39076812	39077012	+	1	NA	NA	NA	-20	NM_026778	68588	Mm.41556	NM_026778	ENSMUSG00000054196	Cthrc1	1110014B07Rik	collagen triple helix repeat containing 1	protein-coding	0.065000	0.676617	
mm_84451.1	chr9	66514452	66514652	-	1	NA	NA	NA	41	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.025000	0.577114	-37(CCCTTTCTGGGC,+,0.00)
mm_39014.1	chr4	152125897	152126097	-	1	NA	NA	NA	2928	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.095000	0.666667	
mm_41811.1	chr5	103781970	103782170	+	1	NA	NA	NA	27497	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.010000	0.393035	
mm_101090.1	chr11	11853494	11853694	-	1	NA	NA	NA	-14529	NR_045178	73321	Mm.443306	NR_045178	ENSMUSG00000086391	1700042O10Rik	-	RIKEN cDNA 1700042O10 gene	ncRNA	0.000000	0.388060	
mm_13674.1	chr2	116067854	116068054	+	1	NA	NA	NA	-510	NM_001346047	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.050000	0.552239	
mm_172491.1	chr7	56013841	56014041	+	1	NA	NA	NA	5632	NM_153578	233280	Mm.389901	NM_153578	ENSMUSG00000047037	Nipa1	1110027G09Rik|A830014A18Rik|FSP3|Spg6	non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)	protein-coding	0.065000	0.487562	-29(GGCCTTAAAAAA,-,0.00)
mm_136780.1	chr17	10456196	10456396	+	1	NA	NA	NA	80	NR_077238	319750	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.020000	0.398010	
mm_64912.1	chr7	16213095	16213295	-	1	NA	NA	NA	8798	NM_001285931	71723	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	0.020000	0.552239	
mm_51786.1	chr6	88200042	88200242	+	1	NA	NA	NA	1478	NM_008090	14461	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.030000	0.547264	-34(ATGTTTTAAAGG,-,0.00)
mm_117656.1	chr13	93192127	93192327	-	1	NA	NA	NA	56	NM_133905	100715	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0.100000	0.731343	
mm_24479.1	chr3	91114259	91114459	+	1	NA	NA	NA	-23554	NM_001101461	229550	Mm.98335	NM_001101461	ENSMUSG00000091175	9130204L05Rik	Gm127	RIKEN cDNA 9130204L05 gene	protein-coding	0.000000	0.273632	
mm_45425.1	chr5	66618690	66618890	-	1	NA	NA	NA	27	NM_009686	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.125000	0.766169	
mm_387.1	chr1	34077185	34077385	+	1	NA	NA	NA	-40074	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.040000	0.542289	
mm_124311.1	chr14	103156298	103156498	-	1	NA	NA	NA	-56832	NM_001347600	50789	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.035000	0.567164	
mm_20219.1	chr2	125767886	125768086	-	1	NA	NA	NA	14884	NM_177608	70354	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.005000	0.283582	
mm_51548.1	chr6	83239159	83239359	+	1	NA	NA	NA	1884	NM_001166067	232156	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	0.030000	0.537313	
mm_54145.1	chr6	22326364	22326564	-	1	NA	NA	NA	29617	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.010000	0.398010	
mm_173162.1	chrX	39738742	39738942	+	1	NA	NA	NA	124762	NM_001191032	100504400	Mm.373409	NM_001191032	ENSMUSG00000095240	Cypt14	-	cysteine-rich perinuclear theca 14	protein-coding	0.000000	0.358209	
mm_130010.1	chr15	86574395	86574595	-	1	NA	NA	NA	360036	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.010000	0.547264	
mm_104663.1	chr11	97629274	97629474	-	1	NA	NA	NA	342	NM_175332	103551	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0.120000	0.746269	
mm_139554.1	chr17	56875380	56875580	+	1	NA	NA	NA	-153	NM_030141	78625	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0.020000	0.537313	
mm_15653.1	chr2	163203061	163203261	+	1	NA	NA	NA	-22293	NM_001098799	269389	Mm.207709	NM_001098799	ENSMUSG00000074607	Tox2	AI851523|AV026525|BI987407|Gcx1|RxHMG1	TOX high mobility group box family member 2	protein-coding	0.155000	0.800995	
mm_110034.1	chr12	16999871	17000071	-	1	NA	NA	NA	147	NM_172574	217430	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	0.085000	0.626866	
mm_44873.1	chr5	34634618	34634818	-	1	NA	NA	NA	2396	NM_026660	68294	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	0.025000	0.646766	
mm_122828.1	chr14	54686848	54687048	-	1	NA	NA	NA	-17	NM_023190	56215	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	0.070000	0.587065	
mm_73242.1	chr8	104239662	104239862	+	1	NA	NA	NA	8796	NR_045642	57813	Mm.183110	NM_021028	ENSMUSG00000035824	Tk2	AU024611|mt-TK	thymidine kinase 2, mitochondrial	protein-coding	0.030000	0.517413	
mm_143709.1	chr17	80700665	80700865	-	1	NA	NA	NA	27260	NM_001290345	225028	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.005000	0.358209	
mm_106475.1	chr11	120139342	120139542	-	1	NA	NA	NA	11909	NM_001164799	72055	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0.030000	0.542289	
mm_110598.1	chr12	56535161	56535361	-	1	NA	NA	NA	1647	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.070000	0.542289	
mm_30218.1	chr3	145018856	145019056	-	1	NA	NA	NA	13820	NM_017474	23844	Mm.33483	NM_017474	ENSMUSG00000028255	Clca1	Clca2|Clca3|gob-5|gob5	chloride channel accessory 1	protein-coding	0.025000	0.492537	
mm_134483.1	chr16	18626305	18626505	-	1	NA	NA	NA	3533	NM_213614	18951	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.130000	0.751244	
mm_95446.1	chr11	50252346	50252546	+	1	NA	NA	NA	-13914	NR_132733	17001	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.005000	0.517413	
mm_160282.1	chr7	122997067	122997267	+	1	NA	NA	NA	26603	NM_175023	19647	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6	protein-coding	0.000000	0.532338	
mm_108321.1	chr12	79762281	79762481	+	1	NA	NA	NA	162352	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.000000	0.417910	-36(CCTTTTATAAAG,+,0.00),-34(TTTTATAAAGAG,+,0.00)
mm_18505.1	chr2	62611707	62611907	-	1	NA	NA	NA	34448	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.030000	0.393035	
mm_110112.1	chr12	26443541	26443741	-	1	NA	NA	NA	12811	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.447761	
mm_48662.1	chr5	145980281	145980481	-	1	NA	NA	NA	29236	NM_019792	56388	Mm.301900	NM_019792	ENSMUSG00000029630	Cyp3a25	AI327008	cytochrome P450, family 3, subfamily a, polypeptide 25	protein-coding	0.005000	0.398010	-5(GGCTTTAAAACG,-,0.00),-4(GCTTTAAAACGC,+,0.00)
mm_120403.1	chr14	64950219	64950419	+	1	NA	NA	NA	274	NM_001253731	210925	Mm.71332	NM_153414	ENSMUSG00000021975	Ints9	BC028953|D14Ertd231e	integrator complex subunit 9	protein-coding	0.025000	0.442786	
mm_5427.1	chr1	34485835	34486035	-	1	NA	NA	NA	-12495	NM_009355	21755	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0.035000	0.472637	
mm_115557.1	chr13	9076287	9076487	-	1	NA	NA	NA	-17494	NM_001311117	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.015000	0.512438	
mm_88847.1	chr10	80930034	80930234	+	1	NA	NA	NA	43	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.075000	0.542289	
mm_116557.1	chr13	46727577	46727777	-	1	NA	NA	NA	172	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.155000	0.741294	
mm_34795.1	chr4	154601201	154601401	+	1	NA	NA	NA	35066	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	0.010000	0.542289	-32(GTCTTGAAAAGC,-,0.00)
mm_48416.1	chr5	140331785	140331985	-	1	NA	NA	NA	13	NM_026510	68017	Mm.38894	NM_026510	ENSMUSG00000029557	Mrm2	2310037B18Rik|Ftsj2	mitochondrial rRNA methyltransferase 2	protein-coding	0.095000	0.621891	
mm_95033.1	chr11	32058753	32058953	+	1	NA	NA	NA	42375	NR_130637	104692	Mm.414035	NR_130637	ENSMUSG00000086386	Gm12108	BB052462|OTTMUSG00000005365	predicted gene 12108	ncRNA	0.015000	0.467662	
mm_132567.1	chr16	38109636	38109836	+	1	NA	NA	NA	-20476	NR_033221	414072	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.005000	0.383085	
mm_116167.1	chr13	30792116	30792316	-	1	NA	NA	NA	42983	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.010000	0.527363	
mm_169982.1	chr17	15010145	15010345	+	1	NA	NA	NA	-61	NM_001123367	100041639	Mm.440445	NM_001123367	ENSMUSG00000079710	Gm3448	-	predicted gene 3448	protein-coding	0.110000	0.681592	
mm_10555.1	chr2	16751295	16751495	+	1	NA	NA	NA	262331	NR_040632	75069	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	0.010000	0.452736	
mm_7327.1	chr1	102628115	102628315	-	1	NA	NA	NA	1472447	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0.015000	0.532338	
mm_2410.1	chr1	93825188	93825388	+	1	NA	NA	NA	48	NM_001310767	98314	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	0.055000	0.631841	
mm_14387.1	chr2	129800207	129800407	+	1	NA	NA	NA	-210	NM_183262	67333	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	0.075000	0.562189	
mm_37269.1	chr4	118543131	118543331	-	1	NA	NA	NA	495	NM_172383	230678	Mm.23639	NM_172383	ENSMUSG00000050854	Tmem125	6330530A05Rik|AV223516	transmembrane protein 125	protein-coding	0.035000	0.532338	
mm_64050.1	chr7	140835396	140835596	+	1	NA	NA	NA	0	NM_029821	76974	Mm.272359	NM_029821	ENSMUSG00000025481	Urah	1190003J15Rik|2810420C16Rik	urate (5-hydroxyiso-) hydrolase	protein-coding	0.030000	0.592040	
mm_110186.1	chr12	27338410	27338610	-	1	NA	NA	NA	4208	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.025000	0.333333	
mm_148019.1	chr18	68429187	68429387	-	1	NA	NA	NA	33	NM_001301372	17200	Mm.426053	NM_008560	ENSMUSG00000045569	Mc2r	ACTH-R|ACTHR|MC2-R	melanocortin 2 receptor	protein-coding	0.015000	0.383085	
mm_67486.1	chr7	80719189	80719389	-	1	NA	NA	NA	-30412	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.005000	0.437811	
mm_153541.1	chr19	41981035	41981235	-	1	NA	NA	NA	1	NM_028152	72199	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	0.070000	0.651741	
mm_20846.1	chr2	148045798	148045998	-	1	NA	NA	NA	50	NM_001291065	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.045000	0.547264	
mm_91115.1	chr10	19187475	19187675	-	1	NA	NA	NA	20337	NR_038022	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.005000	0.412935	68(CTATCTAAAAGG,-,0.00)
mm_159327.1	chr3	32531208	32531408	+	1	NA	NA	NA	1826	NM_024200	67414	Mm.290414	NM_024200	ENSMUSG00000027668	Mfn1	2310002F04Rik|6330416C07Rik|D3Ertd265e|HR2|mKIAA4032	mitofusin 1	protein-coding	0.005000	0.442786	
mm_80692.1	chr9	91380598	91380798	+	1	NA	NA	NA	11726	NM_009576	22774	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.020000	0.522388	
mm_105744.1	chr11	109414767	109414967	-	1	NA	NA	NA	-11079	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.000000	0.482587	
mm_172744.1	chr8	80582303	80582503	-	1	NA	NA	NA	-28636	NM_001167898	333315	Mm.134296	NM_001167898	ENSMUSG00000042353	Frem3	Gm795|NV2	Fras1 related extracellular matrix protein 3	protein-coding	0.020000	0.462687	
mm_7749.1	chr1	131097343	131097543	-	1	NA	NA	NA	400	NM_008551	17164	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.105000	0.696517	
mm_142223.1	chr17	37480542	37480742	-	1	NA	NA	NA	2887	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.000000	0.353234	
mm_77779.1	chr9	3021170	3021370	+	1	NA	NA	NA	17473	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.010000	0.323383	
mm_150611.1	chr19	40894058	40894258	+	1	NA	NA	NA	-545	NR_106167	102466881		NR_106167	ENSMUSG00000099118	Mir8092	Gm27407|mmu-mir-8092	microRNA 8092	ncRNA	0.060000	0.606965	
mm_63033.1	chr7	121074570	121074770	+	1	NA	NA	NA	-140	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.010000	0.402985	-33(CCATTTAGAGTT,+,0.00)
mm_113625.1	chr13	41662832	41663032	+	1	NA	NA	NA	12170	NM_001145878	328231	Mm.227476	NM_177808	ENSMUSG00000054258	Gm5082	A030008J09|EG328231	predicted gene 5082	protein-coding	0.005000	0.527363	
mm_142819.1	chr17	51751072	51751272	-	1	NA	NA	NA	60882	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.000000	0.368159	
mm_5530.1	chr1	37996835	37997035	-	1	NA	NA	NA	273	NM_172054	98258	Mm.28438	NM_172054	ENSMUSG00000058407	Txndc9	AI098020|APACD	thioredoxin domain containing 9	protein-coding	0.065000	0.616915	
mm_114707.1	chr13	83525596	83525796	+	1	NA	NA	NA	953	NM_001347580	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.000000	0.422886	
mm_72208.1	chr8	72646325	72646525	+	1	NA	NA	NA	-286	NM_176940	319555	Mm.212927	NM_176940	ENSMUSG00000048148	Nwd1	A230063L24Rik	NACHT and WD repeat domain containing 1	protein-coding	0.025000	0.537313	
mm_99430.1	chr11	102407626	102407826	+	1	NA	NA	NA	-209	NM_026542	68066	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.125000	0.711443	
mm_83359.1	chr9	44406996	44407196	-	1	NA	NA	NA	452	NM_021789	60409	Mm.29814	NM_021789	ENSMUSG00000032112	Trappc4	1500017G03Rik|AI303617|HSPC172|PTD009|Sbd|Sbdn|Sdcbp2|TRS23	trafficking protein particle complex 4	protein-coding	0.095000	0.686567	
mm_106950.1	chr12	8774471	8774671	+	1	NA	NA	NA	3175	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.000000	0.368159	
mm_36219.1	chr4	62516614	62516814	-	1	NA	NA	NA	3195	NM_001276446	17025	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0.000000	0.572139	
mm_38678.1	chr4	144983363	144983563	-	1	NA	NA	NA	90326	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.015000	0.492537	
mm_66246.1	chr7	35555863	35556063	-	1	NA	NA	NA	-35	NM_033080	110959	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	0.050000	0.611940	87(ACATTTATAGGG,+,0.00)
mm_5137.1	chr1	9721310	9721510	-	1	NA	NA	NA	-21201	NM_008651	17864	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	0.000000	0.338308	-96(TCTTAAATAGGG,+,0.00)
mm_96537.1	chr11	68691835	68692035	+	1	NA	NA	NA	20	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.060000	0.606965	
mm_105122.1	chr11	101171102	101171302	-	1	NA	NA	NA	100	NM_146030	217198	Mm.273254	NM_146030	ENSMUSG00000035172	Plekhh3	BC020025	pleckstrin homology domain containing, family H (with MyTH4 domain) member 3	protein-coding	0.085000	0.681592	
mm_113922.1	chr13	49582588	49582788	+	1	NA	NA	NA	-59	NM_012050	27047	Mm.390589	NM_012050	ENSMUSG00000048368	Omd	OSAD|SLRR2C	osteomodulin	protein-coding	0.005000	0.333333	
mm_127427.1	chr15	101267939	101268139	+	1	NA	NA	NA	1193	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.015000	0.562189	
mm_93039.1	chr10	88356878	88357078	-	1	NA	NA	NA	97	NM_027878	71712	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.085000	0.676617	
mm_63431.1	chr7	127478759	127478959	+	1	NA	NA	NA	-6362	NM_010183	14123	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.065000	0.606965	-96(CACTTTTAAAGG,-,0.00),-95(ACTTTTAAAGGG,+,0.00),-94(CTTTTAAAGGGG,+,0.00),-67(CCCCTTTTAAAG,-,0.00),-66(CCCTTTTAAAGG,-,0.00),-65(CCTTTTAAAGGG,+,0.00),-65(CCTTTTAAAGGG,-,0.00),-64(CTTTTAAAGGGG,+,0.00),32(TCGTCTTAAAGG,-,0.00),35(TCTTAAAGGGGC,+,0.00),70(TCGCCTTAAAGG,-,0.00),71(CGCCTTAAAGGG,-,0.00),73(CCTTAAAGGGAC,+,0.00)
mm_9014.1	chr1	166121043	166121243	-	1	NA	NA	NA	6755	NM_001033344	240892	Mm.35315	NM_001033344	ENSMUSG00000026564	Dusp27	C130085G02Rik|Gm209	dual specificity phosphatase 27 (putative)	protein-coding	0.000000	0.328358	
mm_162291.1	chr1	30052517	30052717	+	1	NA	NA	NA	631129	NR_105760	102465174		NR_105760	ENSMUSG00000099257	Mir6342	Gm27268|mmu-mir-6342	microRNA 6342	ncRNA	0.000000	0.407960	
mm_152182.1	chr19	7426729	7426929	-	1	NA	NA	NA	4256	NR_105957	102466781		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	0.005000	0.517413	
mm_83378.1	chr9	44551151	44551351	-	1	NA	NA	NA	-24830	NM_007551	12145	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	0.015000	0.522388	
mm_128291.1	chr15	37233035	37233235	-	1	NA	NA	NA	99	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	0.110000	0.681592	
mm_53538.1	chr6	136803851	136804051	+	1	NA	NA	NA	480	NM_175652	320332	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	0.015000	0.492537	48(GCCCTGAAAAGG,-,0.00)
mm_76472.1	chr8	85407917	85408117	-	1	NA	NA	NA	24824	NR_033144	66714	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	0.010000	0.308458	
mm_113973.1	chr13	51651628	51651828	+	1	NA	NA	NA	20	NM_029279	75420	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.170000	0.741294	
mm_100544.1	chr11	120677240	120677440	+	1	NA	NA	NA	679	NM_001164224	68938	Mm.294020	NM_026877	ENSMUSG00000025142	Aspscr1	1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG	alveolar soft part sarcoma chromosome region, candidate 1 (human)	protein-coding	0.005000	0.532338	
mm_169789.1	chr16	14067631	14067831	+	1	NA	NA	NA	-80864	NM_001270718	74482	Mm.484026	NM_028968	ENSMUSG00000065968	Ifitm7	4933438K12Rik|Mil4	interferon induced transmembrane protein 7	protein-coding	0.020000	0.472637	
mm_16281.1	chr2	173799953	173800153	+	1	NA	NA	NA	62482	NM_019806	56491	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.020000	0.587065	
mm_123657.1	chr14	69243496	69243696	-	1	NA	NA	NA	41507	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.035000	0.567164	
mm_59230.1	chr7	24709132	24709332	+	1	NA	NA	NA	-27	NM_199150	232972	Mm.293074	NM_199150	ENSMUSG00000045587	BC049730	Lypd10	cDNA sequence BC049730	protein-coding	0.020000	0.487562	
mm_16584.1	chr2	3715489	3715689	-	1	NA	NA	NA	2131	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.000000	0.487562	
mm_129774.1	chr15	82791025	82791225	-	1	NA	NA	NA	3120	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.050000	0.527363	
mm_113448.1	chr13	35738409	35738609	+	1	NA	NA	NA	-2893	NM_001123386	12593	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.010000	0.452736	
mm_121798.1	chr14	20138414	20138614	-	1	NA	NA	NA	43268	NM_021542	16529	Mm.68998	NM_021542	ENSMUSG00000023243	Kcnk5	KCNK5b|TASK-2	potassium channel, subfamily K, member 5	protein-coding	0.025000	0.492537	
mm_109676.1	chr12	113074721	113074921	+	1	NA	NA	NA	319	NM_029381	75671	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0.030000	0.597015	
mm_64404.1	chr7	142510565	142510765	+	1	NA	NA	NA	-3894	NR_033261	677289	Mm.350054	NR_033261	ENSMUSG00000043795	Prr33	ENSMUSG00000043795|Gm14492|OTTMUSG00000016823	proline rich 33	ncRNA	0.010000	0.512438	
mm_889.1	chr1	52844983	52845183	+	1	NA	NA	NA	45	NM_146108	227095	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	0.045000	0.606965	
mm_142389.1	chr17	44814555	44814755	-	1	NA	NA	NA	-28	NM_001146038	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.010000	0.427861	-7(GAGTTTTAAAGC,-,0.00)
mm_54225.1	chr6	28133819	28134019	-	1	NA	NA	NA	450	NM_008174	14823	Mm.320732	NM_008174	ENSMUSG00000024211	Grm8	A230002O04|Gprc1h|mGluR8	glutamate receptor, metabotropic 8	protein-coding	0.050000	0.646766	
mm_107094.1	chr12	17547603	17547803	+	1	NA	NA	NA	2830	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.040000	0.507463	
mm_117313.1	chr13	67553038	67553238	-	1	NA	NA	NA	14	NM_001035231	212276	Mm.422831	NM_183145	ENSMUSG00000095432	Zfp748	KRAB-O|Rslcan20/21|Zfp208|mszf54	zinc finger protein 748	protein-coding	0.070000	0.547264	
mm_74103.1	chr8	122848284	122848484	+	1	NA	NA	NA	10	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.060000	0.681592	
mm_79089.1	chr9	46242561	46242761	+	1	NA	NA	NA	1817	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.040000	0.552239	
mm_127156.1	chr15	98626536	98626736	+	1	NA	NA	NA	-5692	NM_001044741	12297	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0.015000	0.477612	
mm_3667.1	chr1	153652831	153653031	+	1	NA	NA	NA	-106	NM_026380	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding	0.040000	0.572139	
mm_25331.1	chr3	106573631	106573831	+	1	NA	NA	NA	-25929	NM_133869	99712	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.000000	0.353234	
mm_137399.1	chr17	25833031	25833231	+	1	NA	NA	NA	230	NM_019719	56424	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	0.085000	0.681592	
mm_39730.1	chr5	28372990	28373190	+	1	NA	NA	NA	55901	NM_028234	381626	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	0.015000	0.358209	
mm_88701.1	chr10	80145340	80145540	+	1	NA	NA	NA	-2832	NM_001305798	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.040000	0.641791	
mm_101574.1	chr11	34311702	34311902	-	1	NA	NA	NA	-3020	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.005000	0.378109	83(TAGTTTAAAAGC,-,0.00)
mm_96674.1	chr11	69411269	69411469	+	1	NA	NA	NA	2306	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.055000	0.606965	
mm_22460.1	chr3	3298230	3298430	+	1	NA	NA	NA	-209700	NM_013920	30942	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.050000	0.601990	
mm_164095.1	chr15	11334662	11334862	+	1	NA	NA	NA	64896	NM_033074	110960	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	0.005000	0.368159	
mm_88215.1	chr10	70245147	70245347	+	1	NA	NA	NA	-29	NM_025807	66859	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.090000	0.731343	
mm_5629.1	chr1	40397434	40397634	-	1	NA	NA	NA	-32036	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.005000	0.482587	
mm_93704.1	chr10	118141488	118141688	-	1	NA	NA	NA	-199	NM_001162904	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.070000	0.641791	
mm_162052.1	chrX	7658209	7658409	+	1	NA	NA	NA	930	NM_001290624	54630	Mm.232232	NM_175097	ENSMUSG00000031145	Prickle3	Lmo6|Sfc16	prickle planar cell polarity protein 3	protein-coding	0.005000	0.547264	
mm_80788.1	chr9	95954732	95954932	+	1	NA	NA	NA	72	NM_001311130	24127	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	0.095000	0.611940	
mm_102656.1	chr11	63919532	63919732	-	1	NA	NA	NA	2652	NM_018805	54710	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0.040000	0.537313	
mm_117271.1	chr13	64903872	64904072	-	1	NA	NA	NA	-84	NM_001081129	238680	Mm.390590	NM_001081129	ENSMUSG00000033063	Cntnap3	-	contactin associated protein-like 3	protein-coding	0.050000	0.616915	
mm_21876.1	chr2	166083471	166083671	-	1	NA	NA	NA	71714	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.025000	0.442786	-75(CCGTTTATAGGG,-,0.00),-73(GTTTATAGGGGG,+,0.00),-36(TTTTTTAAAAGG,-,0.00)
mm_81938.1	chr9	120303893	120304093	+	1	NA	NA	NA	-80	NM_144557	245049	Mm.100936	NM_144557	ENSMUSG00000041794	Myrip	A230081N12Rik|Slac2-c|Slac2c	myosin VIIA and Rab interacting protein	protein-coding	0.150000	0.796020	
mm_79822.1	chr9	64396530	64396730	+	1	NA	NA	NA	11004	NM_001134399	214058	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	0.010000	0.447761	
mm_18227.1	chr2	51447629	51447829	-	1	NA	NA	NA	-9829	NR_130155	73375	Mm.396227	NR_130155	ENSMUSG00000086007	1700057H21Rik	-	RIKEN cDNA 1700057H21 gene	ncRNA	0.015000	0.512438	
mm_71082.1	chr8	34760775	34760975	+	1	NA	NA	NA	-46735	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.000000	0.462687	
mm_136169.1	chr16	88563108	88563308	-	1	NA	NA	NA	-25	NM_018778	54420	Mm.25836	NM_018778	ENSMUSG00000050520	Cldn8	AI648025	claudin 8	protein-coding	0.005000	0.542289	
mm_61280.1	chr7	66822104	66822304	+	1	NA	NA	NA	-17531	NM_001033877	233332	Mm.445763	NM_001033877	ENSMUSG00000058145	Adamts17	AU023434	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	protein-coding	0.010000	0.417910	
mm_2234.1	chr1	91044373	91044573	+	1	NA	NA	NA	-8971	NM_001310732	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.025000	0.537313	
mm_11437.1	chr2	32006345	32006545	+	1	NA	NA	NA	31995	NM_172268	227720	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	0.015000	0.477612	
mm_56026.1	chr6	86607532	86607732	-	1	NA	NA	NA	-20542	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.020000	0.562189	
mm_32422.1	chr4	107126520	107126720	+	1	NA	NA	NA	29729	NM_172873	242603	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	0.035000	0.542289	
mm_75936.1	chr8	71558813	71559013	-	1	NA	NA	NA	-42	NM_001100462	434325	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	0.070000	0.621891	
mm_157004.1	chrX	7583844	7584044	-	1	NA	NA	NA	3461	NM_001199348	20371	Mm.182291	NM_054039	ENSMUSG00000039521	Foxp3	JM2|scurfin|sf	forkhead box P3	protein-coding	0.020000	0.522388	
mm_48470.1	chr5	140841877	140842077	-	1	NA	NA	NA	-11546	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.000000	0.402985	
mm_57515.1	chr6	125483403	125483603	-	1	NA	NA	NA	11252	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.025000	0.537313	
mm_12750.1	chr2	79237161	79237361	+	1	NA	NA	NA	-18165	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.010000	0.442786	
mm_11256.1	chr2	29914347	29914547	+	1	NA	NA	NA	-20962	NM_028923	74412	Mm.275121	NM_028923	ENSMUSG00000019715	Gle1	4933405K21Rik|AA553313|Gle1l	GLE1 RNA export mediator (yeast)	protein-coding	0.035000	0.592040	
mm_109787.1	chr12	3248500	3248700	-	1	NA	NA	NA	12809	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.010000	0.393035	
mm_64133.1	chr7	141172836	141173036	+	1	NA	NA	NA	-85	NM_001172100	107702	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.045000	0.592040	
mm_38534.1	chr4	141566289	141566489	-	1	NA	NA	NA	20227	NR_030695	320456	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.005000	0.537313	-34(CCCTAGATAAGC,-,0.00)
mm_27109.1	chr3	30699764	30699964	-	1	NA	NA	NA	-21	NM_001309233	320352	Mm.229153	NM_001309233	ENSMUSG00000074653	Lrrc31	E230002P03Rik	leucine rich repeat containing 31	protein-coding	0.015000	0.507463	
mm_348.1	chr1	31176309	31176509	+	1	NA	NA	NA	-26	NM_153601	266744	Mm.389093	NM_153601	ENSMUSG00000050217	Lgsn	Gluld1|Lgs|lengsin	lengsin, lens protein with glutamine synthetase domain	protein-coding	0.020000	0.457711	
mm_81035.1	chr9	104854366	104854566	+	1	NA	NA	NA	-198802	NM_053159	94062	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889	mitochondrial ribosomal protein L3	protein-coding	0.015000	0.482587	
mm_98140.1	chr11	87578399	87578599	+	1	NA	NA	NA	110	NM_001284398	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding	0.070000	0.691542	
mm_88710.1	chr10	80150892	80151092	+	1	NA	NA	NA	1310	NM_001305799	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.070000	0.706468	
mm_59582.1	chr7	28129369	28129569	+	1	NA	NA	NA	3	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.552239	
mm_158501.1	chrX	142390311	142390511	-	1	NA	NA	NA	124	NM_001033600	50790	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	0.095000	0.666667	52(CCTCTTAAGGCC,+,0.00)
mm_147143.1	chr18	36515705	36515905	-	1	NA	NA	NA	0	NM_010415	15200	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	0.120000	0.761194	
mm_5493.1	chr1	36939529	36939729	-	1	NA	NA	NA	-102	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.130000	0.741294	-28(GCCCCTTAGAGG,-,0.00),-27(CCCCTTAGAGGC,+,0.00)
mm_49811.1	chr6	36389228	36389428	+	1	NA	NA	NA	-1094	NR_015589	319472	Mm.226434	NR_015589	ENSMUSG00000073154	9330158H04Rik	-	RIKEN cDNA 9330158H04 gene	ncRNA	0.045000	0.601990	
mm_155210.1	chrX	56779609	56779809	+	1	NA	NA	NA	26	NM_001077362	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.010000	0.497512	
mm_55567.1	chr6	71371091	71371291	-	1	NA	NA	NA	-2236	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.010000	0.427861	
mm_108376.1	chr12	80853955	80854155	+	1	NA	NA	NA	63523	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.005000	0.467662	
mm_78604.1	chr9	37531030	37531230	+	1	NA	NA	NA	3041	NM_027102	69524	Mm.41751	NM_027102	ENSMUSG00000001946	Esam	2310008D05Rik|Esam1|W117m	endothelial cell-specific adhesion molecule	protein-coding	0.045000	0.577114	
mm_39053.1	chr4	153632118	153632318	-	1	NA	NA	NA	-149388	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	0.020000	0.562189	
mm_76473.1	chr8	85425597	85425797	-	1	NA	NA	NA	7144	NR_033144	66714	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	0.010000	0.298507	
mm_112604.1	chr13	14186805	14187005	+	1	NA	NA	NA	123121	NM_198122	94246	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.015000	0.393035	
mm_65393.1	chr7	25094745	25094945	-	1	NA	NA	NA	2330	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.015000	0.577114	
mm_59678.1	chr7	28392940	28393140	+	1	NA	NA	NA	44	NM_019458	54624	Mm.7916	NM_019458	ENSMUSG00000003437	Paf1	5730511K23Rik|AA675045	Paf1, RNA polymerase II complex component	protein-coding	0.085000	0.626866	
mm_79764.1	chr9	62753289	62753489	+	1	NA	NA	NA	58259	NM_010193	14155	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.020000	0.597015	
mm_72749.1	chr8	85096673	85096873	+	1	NA	NA	NA	13504	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.045000	0.557214	
mm_19751.1	chr2	104849678	104849878	-	1	NA	NA	NA	72	NM_178695	228413	Mm.259609	NM_178695	ENSMUSG00000027171	Prrg4	9930111I18Rik|TMG4	proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	protein-coding	0.100000	0.696517	
mm_145969.1	chr18	67932970	67933170	+	1	NA	NA	NA	-187	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.125000	0.786070	
mm_149836.1	chr19	24900341	24900541	+	1	NA	NA	NA	868	NM_008022	14237	Mm.377080	NM_008022	ENSMUSG00000051490	Foxd4	FREAC5|Fkh2	forkhead box D4	protein-coding	0.095000	0.631841	
mm_63237.1	chr7	126563603	126563803	+	1	NA	NA	NA	2663	NM_146200	56347	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.030000	0.457711	
mm_37305.1	chr4	119282167	119282367	-	1	NA	NA	NA	12246	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.075000	0.567164	
mm_136492.1	chr16	96127380	96127580	-	1	NA	NA	NA	245	NM_008251	15312	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	0.135000	0.746269	
mm_99173.1	chr11	100849533	100849733	+	1	NA	NA	NA	952	NM_001113563	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.020000	0.527363	
mm_2225.1	chr1	90603386	90603586	+	1	NA	NA	NA	61	NM_133805	108679	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	0.120000	0.661692	
mm_6499.1	chr1	74284307	74284507	-	1	NA	NA	NA	331	NM_146110	227290	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	0.040000	0.656716	
mm_151653.1	chr19	4121362	4121562	-	1	NA	NA	NA	113	NM_001276284	11632	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.080000	0.592040	
mm_128897.1	chr15	73268410	73268610	-	1	NA	NA	NA	-13628	NR_029561	387169		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA	0.005000	0.477612	
mm_132478.1	chr16	36722454	36722654	+	1	NA	NA	NA	28576	NM_001285791	106347	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.060000	0.626866	
mm_53191.1	chr6	125493222	125493422	+	1	NA	NA	NA	1433	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.010000	0.562189	
mm_169496.1	chr14	75931435	75931635	-	1	NA	NA	NA	-23468	NM_026214	67516	Mm.390712	NM_026214	ENSMUSG00000046523	Kctd4	2210017A09Rik|AU017169	potassium channel tetramerisation domain containing 4	protein-coding	0.035000	0.512438	
mm_118789.1	chr14	24118766	24118966	+	1	NA	NA	NA	29989	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.005000	0.432836	
mm_158019.1	chrX	95964982	95965182	-	1	NA	NA	NA	-8108	NM_152822	76130	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	0.020000	0.492537	
mm_72940.1	chr8	91467610	91467810	+	1	NA	NA	NA	154185	NM_011936	26383	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	0.010000	0.412935	
mm_116514.1	chr13	45688948	45689148	-	1	NA	NA	NA	181604	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.000000	0.422886	
mm_16778.1	chr2	9887658	9887858	-	1	NA	NA	NA	1782	NR_040511	77682	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA	0.020000	0.567164	
mm_67293.1	chr7	78895636	78895836	-	1	NA	NA	NA	-191	NM_026531	68048	Mm.34109	NM_026531	ENSMUSG00000030609	Aen	2700083B06Rik|Isg20l1	apoptosis enhancing nuclease	protein-coding	0.065000	0.587065	
mm_20653.1	chr2	132094498	132094698	-	1	NA	NA	NA	50510	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.025000	0.507463	
mm_139661.1	chr17	57406775	57406975	+	1	NA	NA	NA	48189	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.025000	0.462687	
mm_114612.1	chr13	75845529	75845729	+	1	NA	NA	NA	5743	NM_053108	93692	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.000000	0.427861	
mm_75621.1	chr8	64617545	64617745	-	1	NA	NA	NA	75464	NM_013494	12876	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|R74677|fat	carboxypeptidase E	protein-coding	0.035000	0.477612	
mm_121137.1	chr14	101886791	101886991	+	1	NA	NA	NA	46268	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.025000	0.452736	
mm_143021.1	chr17	56512393	56512593	-	1	NA	NA	NA	-10	NM_011483	20834	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	0.065000	0.601990	
mm_13685.1	chr2	117120338	117120538	+	1	NA	NA	NA	-633	NM_001277256	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.045000	0.537313	
mm_124135.1	chr14	86148146	86148346	-	1	NA	NA	NA	-97724	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	0.025000	0.467662	
mm_149903.1	chr19	25599396	25599596	+	1	NA	NA	NA	-11041	NM_177360	240590	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	0.000000	0.273632	
mm_24680.1	chr3	94864059	94864259	+	1	NA	NA	NA	22799	NM_008945	19172	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	0.025000	0.547264	-83(CTCTTTTAAAAG,-,0.00),-82(TCTTTTAAAAGC,+,0.00),-82(TCTTTTAAAAGC,-,0.00),-81(CTTTTAAAAGCC,+,0.00)
mm_29540.1	chr3	116711774	116711974	-	1	NA	NA	NA	406	NM_144902	229782	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	0.060000	0.651741	
mm_71820.1	chr8	68894567	68894767	+	1	NA	NA	NA	14112	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.015000	0.432836	
mm_10968.1	chr2	25706626	25706826	+	1	NA	NA	NA	-153	NM_023326	107771	Mm.330057	NM_023326	ENSMUSG00000049086	Bmyc	2900002K07Rik|AW060705|Mycb	brain expressed myelocytomatosis oncogene	protein-coding	0.090000	0.597015	
mm_108893.1	chr12	100072340	100072540	+	1	NA	NA	NA	-39891	NM_008947	19179	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.000000	0.273632	
mm_123242.1	chr14	60251260	60251460	-	1	NA	NA	NA	18	NM_170591	71844	Mm.258051	NM_170591	ENSMUSG00000063895	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	0.105000	0.691542	
mm_94285.1	chr11	3989835	3990035	+	1	NA	NA	NA	2	NM_001177691	53897	Mm.103414	NM_016922	ENSMUSG00000049721	Gal3st1	Cst|Gcst	galactose-3-O-sulfotransferase 1	protein-coding	0.010000	0.567164	
mm_63595.1	chr7	128140367	128140567	+	1	NA	NA	NA	10899	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.025000	0.492537	
mm_25437.1	chr3	108092755	108092955	+	1	NA	NA	NA	-211	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	0.015000	0.472637	
mm_92844.1	chr10	81508842	81509042	-	1	NA	NA	NA	-8805	NM_010102	13611	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0.005000	0.482587	
mm_105084.1	chr11	100845960	100846160	-	1	NA	NA	NA	4525	NM_001113563	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.020000	0.482587	
mm_3422.1	chr1	146495562	146495762	+	1	NA	NA	NA	-4	NM_153539	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.010000	0.467662	
mm_72404.1	chr8	81770586	81770786	+	1	NA	NA	NA	428124	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.005000	0.422886	-5(CTTTTAATAGAA,+,0.00),12(TCCTAGAAAAGC,-,0.00)
mm_155547.1	chrX	74313148	74313348	+	1	NA	NA	NA	215	NM_138607	108160	Mm.4370	NM_138607	ENSMUSG00000001962	Fam50a	D0HXS9928E|XAP-5	family with sequence similarity 50, member A	protein-coding	0.070000	0.641791	
mm_84623.1	chr9	70623599	70623799	-	1	NA	NA	NA	33475	NM_172772	235461	Mm.170855	NM_172772	ENSMUSG00000042444	Fam63b	AI465301|B230380D07Rik|mKIAA1164	family with sequence similarity 63, member B	protein-coding	0.000000	0.388060	
mm_7685.1	chr1	128590770	128590970	-	1	NA	NA	NA	1429	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.045000	0.552239	
mm_112354.1	chr12	118657769	118657969	-	1	NA	NA	NA	-127676	NR_045947	100384890	Mm.484658	NR_045947		D230030E09Rik	Npe	Riken cDNA D230030E09 gene	ncRNA	0.005000	0.477612	
mm_138126.1	chr17	34186925	34187125	+	1	NA	NA	NA	305	NM_013585	16912	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	0.035000	0.552239	
mm_77969.1	chr9	7792587	7792787	+	1	NA	NA	NA	8297	NR_049191	100885830		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0.020000	0.487562	
mm_172917.1	chr9	65201741	65201941	-	1	NA	NA	NA	-12849	NM_177460	214424	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.020000	0.378109	
mm_66471.1	chr7	44974703	44974903	-	1	NA	NA	NA	48	NM_153679	78070	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik	carnitine palmitoyltransferase 1c	protein-coding	0.055000	0.587065	
mm_32754.1	chr4	116687080	116687280	+	1	NA	NA	NA	-1158	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.005000	0.422886	
mm_107591.1	chr12	47833955	47834155	+	1	NA	NA	NA	467407	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0.010000	0.338308	
mm_110172.1	chr12	27336462	27336662	-	1	NA	NA	NA	6156	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.020000	0.482587	
mm_19812.1	chr2	110362859	110363059	-	1	NA	NA	NA	34	NM_026271	67606	Mm.291809	NM_026271	ENSMUSG00000074971	Fibin	1110018M03Rik	fin bud initiation factor homolog (zebrafish)	protein-coding	0.060000	0.626866	
mm_27741.1	chr3	69107516	69107716	-	1	NA	NA	NA	19476	NM_008467	16649	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	0.000000	0.358209	
mm_136858.1	chr17	12806031	12806231	+	1	NA	NA	NA	-36425	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.015000	0.412935	
mm_29652.1	chr3	122391147	122391347	-	1	NA	NA	NA	-28533	NM_013867	29815	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0.000000	0.407960	
mm_88578.1	chr10	79682289	79682489	+	1	NA	NA	NA	194	NM_177613	216150	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|UBE2R1	cell division cycle 34	protein-coding	0.145000	0.791045	
mm_74895.1	chr8	25157933	25158133	-	1	NA	NA	NA	1200	NR_106187	102467006		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA	0.005000	0.368159	
mm_56499.1	chr6	99266417	99266617	-	1	NA	NA	NA	-2	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.010000	0.512438	
mm_77922.1	chr9	7352789	7352989	+	1	NA	NA	NA	5515	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.363184	
mm_72554.1	chr8	84066325	84066525	+	1	NA	NA	NA	-411	NM_009055	19724	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	0.085000	0.597015	
mm_124346.1	chr14	103998156	103998356	-	1	NA	NA	NA	28886	NR_045953	73877	Mm.399172	NR_045953		4930432J09Rik	-	RIKEN cDNA 4930432J09 gene	ncRNA	0.000000	0.517413	
mm_150261.1	chr19	34193182	34193382	+	1	NA	NA	NA	1012	NM_029682	76630	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.025000	0.432836	
mm_98855.1	chr11	97663021	97663221	+	1	NA	NA	NA	-291	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.155000	0.771144	
mm_37116.1	chr4	116651323	116651523	-	1	NA	NA	NA	251	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.055000	0.626866	
mm_32985.1	chr4	120136219	120136419	+	1	NA	NA	NA	-24887	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.005000	0.527363	
mm_27704.1	chr3	67463686	67463886	-	1	NA	NA	NA	121	NM_016753	17035	Mm.2632	NM_016753	ENSMUSG00000047557	Lxn	-	latexin	protein-coding	0.060000	0.636816	
mm_171305.1	chr3	93982727	93982927	-	1	NA	NA	NA	-21513	NM_207273	399676	Mm.454051	NM_207273	ENSMUSG00000094163	Tdpoz5	-	TD and POZ domain containing 5	protein-coding	0.005000	0.442786	-36(GCCTATATAAAC,-,0.00)
mm_67656.1	chr7	84689886	84690086	-	1	NA	NA	NA	346	NR_038175	72495	Mm.382914	NR_038175	ENSMUSG00000085236	2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA	0.120000	0.691542	
mm_131730.1	chr16	21855035	21855235	+	1	NA	NA	NA	-36834	NM_172821	71751	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0.005000	0.472637	
mm_106664.1	chr11	121388127	121388327	-	1	NA	NA	NA	24	NM_139147	217371	Mm.281639	NM_139147	ENSMUSG00000025170	Rab40b	SEC4L|rar	Rab40B, member RAS oncogene family	protein-coding	0.085000	0.676617	
mm_110509.1	chr12	54695757	54695957	-	1	NA	NA	NA	37	NM_001331162	66266	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	0.090000	0.626866	
mm_102080.1	chr11	52277266	52277466	-	1	NA	NA	NA	5229	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.020000	0.582090	
mm_6802.1	chr1	84152869	84153069	-	1	NA	NA	NA	65992	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.512438	
mm_95504.1	chr11	51915670	51915870	+	1	NA	NA	NA	-51861	NM_029976	52626	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.010000	0.542289	
mm_144228.1	chr18	10181304	10181504	+	1	NA	NA	NA	388	NM_009071	19877	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.065000	0.631841	
mm_18678.1	chr2	71338126	71338326	-	1	NA	NA	NA	29328	NM_172436	78830	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.015000	0.452736	
mm_112900.1	chr13	20897539	20897739	+	1	NA	NA	NA	103526	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.373134	26(CACTATATAAAA,-,0.00),28(CTATATAAAAGA,-,0.00)
mm_149257.1	chr19	10435098	10435298	+	1	NA	NA	NA	22249	NM_001111140	278795	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0.015000	0.572139	-64(GTTTATAGAGGG,+,0.00)
mm_18599.1	chr2	66785143	66785343	-	1	NA	NA	NA	-333	NM_009135	20272	Mm.38127	NM_009135	ENSMUSG00000034810	Scn7a	1110034K09Rik|AI642000|NaG|Nav2|Nav2.3|Nax|Scn6a	sodium channel, voltage-gated, type VII, alpha	protein-coding	0.010000	0.477612	
mm_7826.1	chr1	132067865	132068065	-	1	NA	NA	NA	97	NM_172510	213006	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4a	A230072B04|A930031D07Rik|AI850289|Mfsd4	major facilitator superfamily domain containing 4A	protein-coding	0.155000	0.805970	
mm_111971.1	chr12	109949562	109949762	-	1	NA	NA	NA	201784	NR_037233	100499517		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	0.020000	0.577114	
mm_150725.1	chr19	43675083	43675283	+	1	NA	NA	NA	5	NR_045645	100502982	Mm.313570	NR_045645		BC037704	-	cDNA sequence BC037704	ncRNA	0.105000	0.641791	
mm_128583.1	chr15	58034222	58034422	-	1	NA	NA	NA	-28	NM_029418	75758	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.115000	0.661692	
mm_137081.1	chr17	21450279	21450479	+	1	NA	NA	NA	5	NM_009558	22709	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	0.050000	0.547264	
mm_133827.1	chr16	95900334	95900534	+	1	NA	NA	NA	-1721	NR_040485	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.025000	0.517413	
mm_68810.1	chr7	125551960	125552160	-	1	NA	NA	NA	-222	NM_001008700	16190	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0.045000	0.527363	-34(GCTTTTAAGTCC,+,0.00)
mm_62835.1	chr7	113765954	113766154	+	1	NA	NA	NA	56	NM_145584	233744	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.080000	0.621891	
mm_103973.1	chr11	84525428	84525628	-	1	NA	NA	NA	6	NM_008498	16869	Mm.4965	NM_008498	ENSMUSG00000018698	Lhx1	Lim1	LIM homeobox protein 1	protein-coding	0.090000	0.666667	
mm_38146.1	chr4	134896214	134896414	-	1	NA	NA	NA	18602	NM_027935	71817	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0.030000	0.587065	
mm_138911.1	chr17	43594774	43594974	+	1	NA	NA	NA	-3365	NR_045444	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.025000	0.402985	41(TCTTATATGGTA,+,0.00)
mm_36384.1	chr4	77151868	77152068	-	1	NA	NA	NA	1059927	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.030000	0.467662	
mm_104746.1	chr11	98463287	98463487	-	1	NA	NA	NA	16553	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.000000	0.447761	
mm_97340.1	chr11	77349174	77349374	+	1	NA	NA	NA	994	NM_001291190	237860	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot homolog 2 (Drosophila)	protein-coding	0.010000	0.402985	
mm_80067.1	chr9	69464372	69464572	+	1	NA	NA	NA	7528	NR_037296	100526560		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0.010000	0.388060	
mm_123652.1	chr14	69221569	69221769	-	1	NA	NA	NA	30977	NM_010921	18095	Mm.3520	NM_010921	ENSMUSG00000022061	Nkx3-1	Bax|NKX3.1|NKX3A|Nkx-3.1|bagpipe	NK-3 transcription factor, locus 1 (Drosophila)	protein-coding	0.015000	0.412935	-100(CCTTTTAACGAG,+,0.00)
mm_156830.1	chrX	164269492	164269692	+	1	NA	NA	NA	161	NM_027153	69656	Mm.293463	NM_027153	ENSMUSG00000031379	Pir	2310042L19Rik|Pirnl	pirin	protein-coding	0.055000	0.666667	
mm_74512.1	chr8	8682995	8683195	-	1	NA	NA	NA	7067	NR_106114	102465762		NR_106114	ENSMUSG00000098917	Mir7654	Gm27748|mmu-mir-7654	microRNA 7654	ncRNA	0.000000	0.318408	-65(TCTTTTAAGGAA,+,0.00)
mm_85690.1	chr9	108071964	108072164	-	1	NA	NA	NA	7237	NM_001311152	84585	Mm.379272	NM_032543	ENSMUSG00000041528	Rnf123	BC003945|Kpc1	ring finger protein 123	protein-coding	0.010000	0.432836	
mm_79373.1	chr9	54698804	54699004	+	1	NA	NA	NA	-655	NM_021422	58233	Mm.489676	NM_021422	ENSMUSG00000032285	Dnaja4	1110021L12Rik|AV358213|Dj4|Hsj4|mmDjA4	DnaJ heat shock protein family (Hsp40) member A4	protein-coding	0.020000	0.552239	
mm_65840.1	chr7	29238003	29238203	-	1	NA	NA	NA	-220	NM_001110201	77254	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	0.060000	0.537313	
mm_147150.1	chr18	36678171	36678371	-	1	NA	NA	NA	-944	NM_001083317	67843	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	0.005000	0.412935	
mm_114233.1	chr13	56609245	56609445	+	1	NA	NA	NA	-258	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.020000	0.532338	
mm_40247.1	chr5	38076427	38076627	+	1	NA	NA	NA	37297	NM_026959	71116	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0.010000	0.452736	
mm_48357.1	chr5	139382201	139382401	-	1	NA	NA	NA	1634	NM_030258	80290	Mm.270003	NM_030258	ENSMUSG00000044197	Gpr146	BC003323|PGR8	G protein-coupled receptor 146	protein-coding	0.005000	0.492537	
mm_44220.1	chr5	4757936	4758136	-	1	NA	NA	NA	180	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.095000	0.676617	
mm_31893.1	chr4	82692672	82692872	+	1	NA	NA	NA	166889	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0.025000	0.512438	
mm_137515.1	chr17	27084877	27085077	+	1	NA	NA	NA	-6268	NR_106142	102465779		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	0.035000	0.562189	
mm_143918.1	chr17	85615358	85615558	-	1	NA	NA	NA	2938	NR_038084	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.040000	0.567164	
mm_115773.1	chr13	19308428	19308628	-	1	NA	NA	NA	87285	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.437811	
mm_74963.1	chr8	26158463	26158663	-	1	NA	NA	NA	394	NM_199042	73754	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0.160000	0.771144	
mm_93493.1	chr10	112160193	112160393	-	1	NA	NA	NA	-3328	NM_001310675	353025	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	0.020000	0.492537	
mm_142535.1	chr17	46520595	46520795	-	1	NA	NA	NA	23906	NM_207161	381101	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	0.035000	0.562189	
mm_52791.1	chr6	121263935	121264135	+	1	NA	NA	NA	18129	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.020000	0.462687	-34(GGTTATATAAGA,-,0.00)
mm_131893.1	chr16	23230904	23231104	+	1	NA	NA	NA	4983	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.005000	0.363184	-48(TCATTAATAGAC,+,0.00)
mm_155930.1	chrX	103482600	103482800	+	1	NA	NA	NA	533	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.035000	0.417910	
mm_108591.1	chr12	85350951	85351151	+	1	NA	NA	NA	-11689	NM_145138	217718	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.005000	0.537313	
mm_113145.1	chr13	24721597	24721797	+	1	NA	NA	NA	40240	NM_020567	57441	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.020000	0.552239	
mm_169536.1	chr14	95055170	95055370	+	1	NA	NA	NA	-825996	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	0.040000	0.522388	
mm_148756.1	chr19	6058240	6058440	+	1	NA	NA	NA	373	NM_001190436	14109	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	0.035000	0.507463	
mm_40446.1	chr5	53591502	53591702	+	1	NA	NA	NA	1116	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.035000	0.512438	
mm_15711.1	chr2	164017883	164018083	+	1	NA	NA	NA	-7241	NM_001114079	381404	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	0.015000	0.467662	
mm_28755.1	chr3	95819263	95819463	-	1	NA	NA	NA	-410	NM_001081293	75137	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	0.070000	0.472637	
mm_119848.1	chr14	54440672	54440872	+	1	NA	NA	NA	9174	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.010000	0.616915	
mm_150048.1	chr19	29380377	29380577	+	1	NA	NA	NA	13039	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.035000	0.527363	
mm_32454.1	chr4	107367948	107368148	+	1	NA	NA	NA	264	NM_028355	72787	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0.100000	0.731343	
mm_74113.1	chr8	123042507	123042707	+	1	NA	NA	NA	32	NR_045268	100503178	Mm.294938	NR_045268	ENSMUSG00000099881	2810013P06Rik	-	RIKEN cDNA 2810013P06 gene	ncRNA	0.090000	0.631841	
mm_48195.1	chr5	137530920	137531120	-	1	NA	NA	NA	-1426	NR_105846	102465227		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0.055000	0.611940	
mm_168839.1	chr12	23315241	23315441	-	1	NA	NA	NA	-305098	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA	0.105000	0.711443	
mm_139783.1	chr17	65794088	65794288	+	1	NA	NA	NA	10833	NR_104465	70351	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0.005000	0.432836	
mm_31304.1	chr4	46039149	46039349	+	1	NA	NA	NA	27	NM_021883	21916	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0.130000	0.776119	
mm_45784.1	chr5	87337025	87337225	-	1	NA	NA	NA	70	NM_028094	72094	Mm.482739	NM_028094	ENSMUSG00000035780	Ugt2a3	2010321J07Rik	UDP glucuronosyltransferase 2 family, polypeptide A3	protein-coding	0.020000	0.462687	
mm_51432.1	chr6	78466719	78466919	+	1	NA	NA	NA	2055	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.005000	0.487562	
mm_94610.1	chr11	16257773	16257973	+	1	NA	NA	NA	149	NM_145967	211739	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding	0.065000	0.597015	
mm_121602.1	chr14	8003954	8004154	-	1	NA	NA	NA	1088	NM_001331064	66082	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	0.030000	0.472637	
mm_4002.1	chr1	164796540	164796740	+	1	NA	NA	NA	-92	NM_019759	56429	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	0.020000	0.497512	
mm_138398.1	chr17	35052919	35053119	+	1	NA	NA	NA	2776	NM_033444	114584	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.010000	0.527363	
mm_111285.1	chr12	85374608	85374808	-	1	NA	NA	NA	9	NM_026775	68581	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.085000	0.626866	
mm_6078.1	chr1	62703706	62703906	-	1	NA	NA	NA	489	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.055000	0.522388	
mm_94227.1	chr11	3289081	3289281	+	1	NA	NA	NA	50	NR_045109	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.060000	0.606965	
mm_132688.1	chr16	43230652	43230852	+	1	NA	NA	NA	-16532	NM_181058	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.000000	0.353234	
mm_97842.1	chr11	83065148	83065348	+	1	NA	NA	NA	136	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.010000	0.517413	
mm_123790.1	chr14	70429293	70429493	-	1	NA	NA	NA	-299	NM_021308	57746	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	0.030000	0.587065	
mm_96873.1	chr11	70214019	70214219	+	1	NA	NA	NA	209	NM_153081	216867	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0.050000	0.626866	
mm_110342.1	chr12	36156630	36156830	-	1	NA	NA	NA	95	NM_025840	66912	Mm.288669	NM_025840	ENSMUSG00000020547	Bzw2	1110001I24Rik|Bdm2|HSPC028	basic leucine zipper and W2 domains 2	protein-coding	0.070000	0.656716	
mm_147257.1	chr18	38635738	38635938	-	1	NA	NA	NA	-34570	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.025000	0.447761	-25(CGCTATTTAAAC,-,0.00)
mm_44349.1	chr5	17787629	17787829	-	1	NA	NA	NA	48167	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.223881	74(TTATATAAAAGC,-,0.00)
mm_115973.1	chr13	24134991	24135191	-	1	NA	NA	NA	-143877	NM_145399	214189	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.015000	0.482587	
mm_109266.1	chr12	109545108	109545308	+	1	NA	NA	NA	-190	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.005000	0.502488	
mm_155532.1	chrX	74302294	74302494	+	1	NA	NA	NA	-2618	NM_010273	14567	Mm.205830	NM_010273	ENSMUSG00000015291	Gdi1	GDIA|GDIalpha	guanosine diphosphate (GDP) dissociation inhibitor 1	protein-coding	0.015000	0.512438	
mm_129615.1	chr15	80013874	80014074	-	1	NA	NA	NA	834	NM_011057	18591	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.115000	0.736318	
mm_66585.1	chr7	45386661	45386861	-	1	NA	NA	NA	8981	NM_009224	20637	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	0.020000	0.417910	
mm_71355.1	chr8	45658597	45658797	+	1	NA	NA	NA	-3296	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.015000	0.552239	
mm_126413.1	chr15	80257076	80257276	+	1	NA	NA	NA	1992	NM_009716	11911	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	0.010000	0.542289	
mm_119842.1	chr14	54436109	54436309	+	1	NA	NA	NA	4611	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.035000	0.557214	
mm_142007.1	chr17	35200193	35200393	-	1	NA	NA	NA	1714	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.020000	0.572139	
mm_8294.1	chr1	143666755	143666955	-	1	NA	NA	NA	26158	NM_020025	26878	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.000000	0.308458	
mm_108290.1	chr12	79145752	79145952	+	1	NA	NA	NA	15064	NM_009705	11847	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.005000	0.348259	
mm_127716.1	chr15	103034530	103034730	+	1	NA	NA	NA	235	NM_013553	15423	Mm.1351	NM_013553	ENSMUSG00000075394	Hoxc4	Hox-3.5	homeobox C4	protein-coding	0.045000	0.427861	
mm_143591.1	chr17	74459128	74459328	-	1	NA	NA	NA	-120	NM_001033367	268973	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.010000	0.432836	-81(TGCTCTTAAAGG,-,0.00),-80(GCTCTTAAAGGC,+,0.00)
mm_53333.1	chr6	129234812	129235012	+	1	NA	NA	NA	3133	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.005000	0.557214	-35(CACTATAAAAGG,-,0.00)
mm_153514.1	chr19	41384999	41385199	-	1	NA	NA	NA	-29	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.120000	0.731343	
mm_34870.1	chr4	155558702	155558902	+	1	NA	NA	NA	-3590	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.010000	0.472637	
mm_147661.1	chr18	60600349	60600549	-	1	NA	NA	NA	-8733	NM_133363	170947	Mm.159257	NM_133363	ENSMUSG00000049173	Myoz3	4833419K08Rik|Fatz-3	myozenin 3	protein-coding	0.025000	0.606965	
mm_72513.1	chr8	83900612	83900812	+	1	NA	NA	NA	614	NM_181039	330814	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0.100000	0.651741	-8(TTTTTTATACTC,+,0.00),21(CCTTTTAAATTT,+,0.00)
mm_35377.1	chr4	33189300	33189500	-	1	NA	NA	NA	337	NM_001034867	242377	Mm.372465	NM_001034867	ENSMUSG00000054659	Pm20d2	Acy1l2|Gm424	peptidase M20 domain containing 2	protein-coding	0.145000	0.726368	
mm_57464.1	chr6	125191542	125191742	-	1	NA	NA	NA	-56	NM_146171	68298	Mm.257590	NM_146171	ENSMUSG00000038252	Ncapd2	2810406C15Rik|2810465G24Rik|CAP-D2|CNAP1|mKIAA0159	non-SMC condensin I complex, subunit D2	protein-coding	0.095000	0.611940	
mm_87890.1	chr10	61845622	61845822	+	1	NA	NA	NA	-61858	NM_207000	404634	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	0.005000	0.507463	
mm_76526.1	chr8	87472509	87472709	-	1	NA	NA	NA	-17	NM_019626	12404	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0.110000	0.741294	
mm_142364.1	chr17	44105648	44105848	-	1	NA	NA	NA	60	NM_199016	224794	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90|mKIAA0879	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	0.145000	0.731343	
mm_108923.1	chr12	100855978	100856178	+	1	NA	NA	NA	43446	NM_001177674	238377	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.000000	0.457711	
mm_12612.1	chr2	74691765	74691965	+	1	NA	NA	NA	-26	NM_013554	15430	Mm.24420	NM_013554	ENSMUSG00000050368	Hoxd10	AI385591|AI874987|Hox-4.5|Hox-5.3	homeobox D10	protein-coding	0.055000	0.542289	
mm_122965.1	chr14	54973731	54973931	-	1	NA	NA	NA	1945	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.035000	0.577114	
mm_110591.1	chr12	56532863	56533063	-	1	NA	NA	NA	-3543	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.065000	0.512438	
mm_21204.1	chr2	155592639	155592839	-	1	NA	NA	NA	71	NM_001291111	14854	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	0.105000	0.671642	
mm_79384.1	chr9	54772783	54772983	+	1	NA	NA	NA	8135	NM_013496	12903	Mm.34797	NM_013496	ENSMUSG00000032291	Crabp1	AI326249|CRABP-I|Crabp-1|CrabpI|Rbp-5	cellular retinoic acid binding protein I	protein-coding	0.030000	0.532338	
mm_15459.1	chr2	157441871	157442071	+	1	NA	NA	NA	17678	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.020000	0.427861	-72(CCTTTAATGTAC,+,0.00)
mm_44913.1	chr5	35671444	35671644	-	1	NA	NA	NA	8236	NM_001042615	78558	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.020000	0.582090	
mm_123263.1	chr14	61305229	61305429	-	1	NA	NA	NA	5	NR_033788	67355	Mm.193728	NR_033788	ENSMUSG00000101505	1700109G14Rik	1700126G13Rik	RIKEN cDNA 1700109G14 gene	ncRNA	0.000000	0.497512	
mm_95082.1	chr11	32745381	32745581	+	1	NA	NA	NA	79113	NM_027050	69351	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	0.010000	0.492537	
mm_111476.1	chr12	98683602	98683802	-	1	NA	NA	NA	50943	NM_011877	24000	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0.025000	0.477612	
mm_170987.1	chr2	7404154	7404354	+	1	NA	NA	NA	-8056	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.040000	0.497512	10(CTCTTTAAAGAG,+,0.00),10(CTCTTTAAAGAG,-,0.00),12(CTTTAAAGAGGG,+,0.00)
mm_161280.1	chr14	19768249	19768449	+	1	NA	NA	NA	17092	NM_008695	18074	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.035000	0.587065	
mm_105696.1	chr11	107914955	107915155	-	1	NA	NA	NA	0	NM_001199301	140723	Mm.87663	NM_080644	ENSMUSG00000040373	Cacng5	-	calcium channel, voltage-dependent, gamma subunit 5	protein-coding	0.090000	0.696517	
mm_124824.1	chr15	9072931	9073131	+	1	NA	NA	NA	1771	NM_001040395	68646	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.025000	0.452736	
mm_62726.1	chr7	110774146	110774346	+	1	NA	NA	NA	1642	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.000000	0.497512	
mm_17792.1	chr2	33087088	33087288	-	1	NA	NA	NA	16	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.005000	0.452736	
mm_14190.1	chr2	127081458	127081658	+	1	NA	NA	NA	10901	NM_026678	109778	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0.000000	0.318408	
mm_104230.1	chr11	88625545	88625745	-	1	NA	NA	NA	6394	NR_131025	68397	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	0.025000	0.636816	
mm_103131.1	chr11	70237485	70237685	-	1	NA	NA	NA	329	NM_001177601	104457	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	0.100000	0.671642	
mm_155894.1	chrX	101652446	101652646	+	1	NA	NA	NA	12328	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.010000	0.427861	
mm_100988.1	chr11	7213867	7214067	-	1	NA	NA	NA	-44	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding	0.135000	0.746269	
mm_63892.1	chr7	138846305	138846505	+	1	NA	NA	NA	19	NM_026391	52432	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	0.170000	0.761194	
mm_89872.1	chr10	108264769	108264969	+	1	NA	NA	NA	-67320	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.105000	0.587065	
mm_7595.1	chr1	125450266	125450466	-	1	NA	NA	NA	-14639	NM_001205386	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.000000	0.412935	
mm_97273.1	chr11	75960907	75961107	+	1	NA	NA	NA	-35116	NM_001291159	380714	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	0.005000	0.502488	
mm_145207.1	chr18	50024241	50024441	+	1	NA	NA	NA	-28941	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.005000	0.442786	
mm_100278.1	chr11	117790603	117790803	+	1	NA	NA	NA	-6957	NM_029964	77727	Mm.159981	NM_029964	ENSMUSG00000025573	6030468B19Rik	-	RIKEN cDNA 6030468B19 gene	protein-coding	0.035000	0.552239	
mm_124578.1	chr14	124621807	124622007	-	1	NA	NA	NA	55220	NM_207667	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.000000	0.328358	
mm_139928.1	chr17	71019455	71019655	+	1	NA	NA	NA	-2	NM_010867	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.020000	0.562189	-99(GGCCATAAAAGG,-,0.00)
mm_48964.1	chr6	4600651	4600851	+	1	NA	NA	NA	-315	NM_145398	213819	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1	CAS1 domain containing 1	protein-coding	0.070000	0.731343	
mm_140113.1	chr17	78881915	78882115	+	1	NA	NA	NA	557	NM_011163	19106	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	0.005000	0.537313	
mm_50008.1	chr6	41059265	41059465	+	1	NA	NA	NA	-23856	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.462687	
mm_73668.1	chr8	111259203	111259403	+	1	NA	NA	NA	-101	NM_009149	20340	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0.135000	0.706468	
mm_34232.1	chr4	141096844	141097044	+	1	NA	NA	NA	8599	NM_177867	329972	Mm.247201	NM_177867	ENSMUSG00000045004	Spata21	4933414G08	spermatogenesis associated 21	protein-coding	0.020000	0.616915	
mm_80577.1	chr9	84041217	84041417	+	1	NA	NA	NA	92536	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.005000	0.308458	
mm_118125.1	chr13	104228715	104228915	-	1	NA	NA	NA	29	NM_172807	238831	Mm.98910	NM_172807	ENSMUSG00000021713	Ppwd1	4632422M10Rik|A330090G21Rik	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding	0.115000	0.611940	
mm_72874.1	chr8	88696928	88697128	+	1	NA	NA	NA	0	NM_001128170	74256	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	0.100000	0.686567	
mm_20876.1	chr2	148732270	148732470	-	1	NA	NA	NA	50	NM_019632	17957	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	0.080000	0.641791	
mm_38780.1	chr4	148075320	148075520	-	1	NA	NA	NA	12644	NM_009642	11610	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.065000	0.552239	
mm_21676.1	chr2	164425919	164426119	-	1	NA	NA	NA	17169	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.030000	0.537313	
mm_51909.1	chr6	91212693	91212893	+	1	NA	NA	NA	29	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.095000	0.661692	
mm_87863.1	chr10	61180376	61180576	+	1	NA	NA	NA	5214	NM_023064	65971	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.020000	0.492537	
mm_93928.1	chr10	127165586	127165786	-	1	NA	NA	NA	-145	NM_027739	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.105000	0.741294	
mm_10794.1	chr2	24349405	24349605	+	1	NA	NA	NA	4134	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.025000	0.517413	84(CCCCTTATAGTC,+,0.00)
mm_44168.1	chr5	150764756	150764956	+	1	NA	NA	NA	91029	NM_001346503	100710	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	0.005000	0.343284	
mm_10672.1	chr2	21205650	21205850	+	1	NA	NA	NA	26	NM_177588	208967	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	0.075000	0.646766	
mm_10789.1	chr2	24347623	24347823	+	1	NA	NA	NA	2352	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.000000	0.517413	
mm_36576.1	chr4	88019429	88019629	-	1	NA	NA	NA	13878	NM_027326	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.005000	0.343284	63(CCCTTTAAAAAC,+,0.00),63(CCCTTTAAAAAC,-,0.00)
mm_111045.1	chr12	79646546	79646746	-	1	NA	NA	NA	278087	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.025000	0.477612	
mm_88306.1	chr10	75324886	75325086	+	1	NA	NA	NA	128	NM_001331096	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.035000	0.606965	
mm_57485.1	chr6	125265235	125265435	-	1	NA	NA	NA	-190	NR_015527	73870	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.025000	0.532338	
mm_148472.1	chr19	4097348	4097548	+	1	NA	NA	NA	97	NM_026373	52004	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0.075000	0.691542	
mm_55079.1	chr6	49214489	49214689	-	1	NA	NA	NA	365	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.050000	0.487562	
mm_73943.1	chr8	120109336	120109536	+	1	NA	NA	NA	-4716	NM_001163762	234797	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.015000	0.542289	
mm_145145.1	chr18	45559797	45559997	+	1	NA	NA	NA	-257	NM_080465	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.120000	0.711443	
mm_42166.1	chr5	112259542	112259742	+	1	NA	NA	NA	3822	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.010000	0.482587	
mm_147043.1	chr18	34887278	34887478	-	1	NA	NA	NA	26171	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.130000	0.791045	
mm_120672.1	chr14	70554401	70554601	+	1	NA	NA	NA	445	NM_021877	15460	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	0.105000	0.721393	
mm_69882.1	chr7	141636795	141636995	-	1	NA	NA	NA	16194	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.005000	0.487562	
mm_53517.1	chr6	136463581	136463781	+	1	NA	NA	NA	-48112	NM_001201390	100502936	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	0.020000	0.527363	-12(CCATTTAAACAA,+,0.00)
mm_127398.1	chr15	101134514	101134714	+	1	NA	NA	NA	6092	NM_001277257	11482	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	0.015000	0.542289	
mm_28090.1	chr3	85887249	85887449	-	1	NA	NA	NA	169	NM_177130	320302	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding	0.070000	0.666667	
mm_67879.1	chr7	99238494	99238694	-	1	NA	NA	NA	17	NM_177448	233549	Mm.208030	NM_177448	ENSMUSG00000052396	Mogat2	DGAT2L5|MGAT2|Mgat1l	monoacylglycerol O-acyltransferase 2	protein-coding	0.025000	0.671642	
mm_122051.1	chr14	30160685	30160885	-	1	NA	NA	NA	138152	NM_175343	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.005000	0.293532	
mm_159646.1	chr4	144378020	144378220	-	1	NA	NA	NA	-187	NM_001115077	627009	Mm.473686	NM_001115077	ENSMUSG00000073721	Gm13125	EG627009|OTTMUSG00000010547	predicted gene 13125	protein-coding	0.005000	0.547264	
mm_5673.1	chr1	43092368	43092568	-	1	NA	NA	NA	6154	NM_001013025	73122	Mm.246069	NM_001013025	ENSMUSG00000070939	Tgfbrap1	3110018K12Rik|AU024090|AU042859|AW742551|Trap1	transforming growth factor, beta receptor associated protein 1	protein-coding	0.195000	0.850746	
mm_99375.1	chr11	101984249	101984449	+	1	NA	NA	NA	442	NM_028207	72349	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	0.055000	0.636816	
mm_960.1	chr1	57995920	57996120	+	1	NA	NA	NA	46	NM_199007	68549	Mm.32800	NM_199007	ENSMUSG00000026039	Sgol2a	1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Tripin	shugoshin-like 2a (S. pombe)	protein-coding	0.090000	0.616915	
mm_125619.1	chr15	61987616	61987816	+	1	NA	NA	NA	2375	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.095000	0.646766	
mm_15969.1	chr2	166072112	166072312	+	1	NA	NA	NA	79575	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.015000	0.457711	13(CTTTTTATATGG,+,0.00),15(TTTTATATGGGG,+,0.00)
mm_71862.1	chr8	69088622	69088822	+	1	NA	NA	NA	-14	NM_007509	11966	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0.135000	0.741294	
mm_142626.1	chr17	47395307	47395507	-	1	NA	NA	NA	5199	NM_008189	14913	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	0.030000	0.472637	
mm_152538.1	chr19	11327870	11328070	-	1	NA	NA	NA	6725	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.005000	0.432836	
mm_47705.1	chr5	129887197	129887397	-	1	NA	NA	NA	173	NM_024166	14004	Mm.30133	NM_024166	ENSMUSG00000070493	Chchd2	AL033347|Etohi6	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding	0.080000	0.572139	
mm_29288.1	chr3	107742477	107742677	-	1	NA	NA	NA	17892	NM_001113530	12977	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0.020000	0.562189	2(CAGCTTAAAGGG,-,0.00)
mm_142326.1	chr17	43490244	43490444	-	1	NA	NA	NA	12429	NM_008585	17287	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	0.000000	0.278607	
mm_11089.1	chr2	27886328	27886528	+	1	NA	NA	NA	3	NM_015734	12831	Mm.7281	NM_015734	ENSMUSG00000026837	Col5a1	AI413331	collagen, type V, alpha 1	protein-coding	0.095000	0.721393	
mm_2623.1	chr1	120602417	120602617	+	1	NA	NA	NA	30	NM_010133	13798	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1|engrailed-1	engrailed 1	protein-coding	0.040000	0.517413	80(TTCCCTTTAAGG,-,0.00),82(CCCTTTAAGGAA,+,0.00)
mm_107797.1	chr12	64917754	64917954	+	1	NA	NA	NA	-57	NM_001025605	217648	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	0.115000	0.731343	
mm_8784.1	chr1	161251034	161251234	-	1	NA	NA	NA	76	NR_130150	11758	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	0.085000	0.676617	
mm_143185.1	chr17	58908444	58908644	-	1	NA	NA	NA	82831	NM_027001	69239	Mm.246732	NM_027001	ENSMUSG00000024227	Pdzph1	2610034M16Rik|AV114557	PDZ and pleckstrin homology domains 1	protein-coding	0.015000	0.412935	-82(GGCTTTTTAAGG,-,0.00),-80(CTTTTTAAGGGT,+,0.00)
mm_27983.1	chr3	81968184	81968384	-	1	NA	NA	NA	7444	NM_019911	56720	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	0.010000	0.373134	
mm_129912.1	chr15	84131938	84132138	-	1	NA	NA	NA	-8863	NM_029427	75772	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0.025000	0.582090	
mm_99332.1	chr11	101465210	101465410	+	1	NA	NA	NA	889	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.040000	0.616915	
mm_43905.1	chr5	144255192	144255392	+	1	NA	NA	NA	67	NM_018772	55950	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.170000	0.805970	
mm_153647.1	chr19	44280698	44280898	-	1	NA	NA	NA	-12878	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.025000	0.532338	-32(TGCTATTTAAAG,-,0.00)
mm_142135.1	chr17	35909954	35910154	-	1	NA	NA	NA	14	NM_001142745	73242	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	0.090000	0.656716	
mm_141842.1	chr17	34729899	34730099	-	1	NA	NA	NA	13898	NM_009780	12268	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	0.005000	0.567164	
mm_95388.1	chr11	49245432	49245632	+	1	NA	NA	NA	1341	NM_001110148	17308	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.020000	0.522388	
mm_10334.1	chr2	11626088	11626288	+	1	NA	NA	NA	-16604	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.010000	0.393035	
mm_77992.1	chr9	8544143	8544343	+	1	NA	NA	NA	101	NM_001282087	22068	Mm.325086	NM_013838	ENSMUSG00000031997	Trpc6	AV025995|LLHWJM002|LLHWJM003|LLHWJM004|TRP-6|Trrp6|mtrp6	transient receptor potential cation channel, subfamily C, member 6	protein-coding	0.040000	0.611940	
mm_96411.1	chr11	67254578	67254778	+	1	NA	NA	NA	16866	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.020000	0.532338	
mm_112890.1	chr13	20884978	20885178	+	1	NA	NA	NA	90965	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.447761	51(GCCTCTATATGC,-,0.00)
mm_37918.1	chr4	132785275	132785475	-	1	NA	NA	NA	10989	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.030000	0.601990	
mm_124765.1	chr15	6665207	6665407	+	1	NA	NA	NA	-43074	NM_030168	78757	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.005000	0.363184	
mm_29674.1	chr3	122801932	122802132	-	1	NA	NA	NA	-52	NR_045168	71647	Mm.449992	NR_045168	ENSMUSG00000106583	4930447N08Rik	-	RIKEN cDNA 4930447N08 gene	ncRNA	0.035000	0.557214	
mm_66361.1	chr7	43530239	43530439	-	1	NA	NA	NA	2832	NM_001111058	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.010000	0.482587	-79(GTTTTTAAACTC,+,0.00)
mm_125658.1	chr15	64023991	64024191	+	1	NA	NA	NA	36357	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.030000	0.532338	
mm_129647.1	chr15	80649956	80650156	-	1	NA	NA	NA	3983	NR_105922	102466773		NR_105922	ENSMUSG00000098631	Mir6957	Gm27895|mmu-mir-6957	microRNA 6957	ncRNA	0.000000	0.507463	-93(CTCTCTAAAGGG,-,0.00)
mm_129662.1	chr15	81111402	81111602	-	1	NA	NA	NA	-6455	NM_153049	223701	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.000000	0.308458	
mm_149406.1	chr19	11392690	11392890	+	1	NA	NA	NA	-14871	NM_029499	64380	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	0.000000	0.427861	
mm_723.1	chr1	42851174	42851374	+	1	NA	NA	NA	41	NM_023514	69527	Mm.252982	NM_023514	ENSMUSG00000060679	Mrps9	2310002A08Rik|AW322516|Mrp-S9|S9mt|mg637	mitochondrial ribosomal protein S9	protein-coding	0.055000	0.626866	
mm_151098.1	chr19	47854920	47855120	+	1	NA	NA	NA	47	NM_010362	14873	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0.105000	0.671642	-81(TCCCTTTAAAGG,-,0.00),-80(CCCTTTAAAGGC,+,0.00),-80(CCCTTTAAAGGC,-,0.00),-79(CCTTTAAAGGCG,+,0.00)
mm_137473.1	chr17	26699231	26699431	+	1	NA	NA	NA	-16319	NM_029870	77128	Mm.275414	NM_029870	ENSMUSG00000048249	Crebrf	A930001N09Rik|LRF	CREB3 regulatory factor	protein-coding	0.020000	0.462687	
mm_33549.1	chr4	130934740	130934940	+	1	NA	NA	NA	-9545	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.030000	0.522388	
mm_141285.1	chr17	27910125	27910325	-	1	NA	NA	NA	919	NM_181413	224650	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.020000	0.502488	-3(GTGTCTAAAAGA,-,0.00)
mm_17123.1	chr2	24763045	24763245	-	1	NA	NA	NA	7	NM_001042528	12287	Mm.4424	NM_007579	ENSMUSG00000004113	Cacna1b	AW050276|AW060892|AW822256|BIII|Cav2.2|Cchn1a|alpha(1B)	calcium channel, voltage-dependent, N type, alpha 1B subunit	protein-coding	0.140000	0.746269	-59(CCCCTTATAGGG,+,0.00),-59(CCCCTTATAGGG,-,0.00),-57(CCTTATAGGGCG,+,0.00)
mm_84390.1	chr9	65423150	65423350	-	1	NA	NA	NA	-477	NM_178933	330962	Mm.335247	NM_178933	ENSMUSG00000053862	Slc51b	Ostb	solute carrier family 51, beta subunit	protein-coding	0.015000	0.507463	
mm_57971.1	chr6	135346404	135346604	-	1	NA	NA	NA	-16427	NM_010128	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.010000	0.472637	
mm_142266.1	chr17	39845819	39846019	-	1	NA	NA	NA	2922	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.120000	0.711443	
mm_41750.1	chr5	102845075	102845275	+	1	NA	NA	NA	168	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.015000	0.577114	
mm_26950.1	chr3	20274757	20274957	-	1	NA	NA	NA	876	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.000000	0.328358	-50(TGCTTTAAAAAC,-,0.00)
mm_50773.1	chr6	53629846	53630046	+	1	NA	NA	NA	56572	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.000000	0.303483	
mm_146869.1	chr18	25168773	25168973	-	1	NA	NA	NA	4	NM_001142698	66648	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.130000	0.771144	
mm_157434.1	chrX	38634908	38635108	-	1	NA	NA	NA	135	NM_021550	59048	Mm.441410	NM_021550	ENSMUSG00000048970	C1galt1c1	1500002I11Rik|AB030184|C1GalT2|C81205|Cosmc	C1GALT1-specific chaperone 1	protein-coding	0.055000	0.611940	
mm_43062.1	chr5	124327537	124327737	+	1	NA	NA	NA	335	NM_001081323	269702	Mm.60224	NM_001081323	ENSMUSG00000038126	Mphosph9	4930548D04Rik|9630025B04Rik|AW413446|AW547060|B930097C17Rik|C87456|MPP-9|MPP9	M-phase phosphoprotein 9	protein-coding	0.075000	0.636816	-32(GTCTAGAAAAGG,-,0.00)
mm_76507.1	chr8	86885082	86885282	-	1	NA	NA	NA	76	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.145000	0.791045	
mm_133552.1	chr16	91373131	91373331	+	1	NA	NA	NA	448	NM_001110498	15976	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.060000	0.621891	
mm_5145.1	chr1	9748199	9748399	-	1	NA	NA	NA	83	NM_173443	70675	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	0.075000	0.616915	
mm_32932.1	chr4	119236804	119237004	+	1	NA	NA	NA	3075	NM_001042411	56401	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	0.035000	0.592040	
mm_75067.1	chr8	33806773	33806973	-	1	NA	NA	NA	-59103	NM_001206849	72632	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	0.020000	0.532338	
mm_116323.1	chr13	37992008	37992208	-	1	NA	NA	NA	2082	NM_025965	107513	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0.000000	0.308458	
mm_15467.1	chr2	157464236	157464436	+	1	NA	NA	NA	40043	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.020000	0.567164	-8(GCATTTATGGAG,+,0.00)
mm_69353.1	chr7	130266149	130266349	-	1	NA	NA	NA	559	NM_010207	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	0.185000	0.791045	
mm_67506.1	chr7	80782193	80782393	-	1	NA	NA	NA	21038	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.035000	0.537313	
mm_59666.1	chr7	28375681	28375881	+	1	NA	NA	NA	-3119	NM_001083912	101497	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.130000	0.686567	
mm_97476.1	chr11	78323033	78323233	+	1	NA	NA	NA	60	NM_001303423	11676	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0.040000	0.597015	
mm_4226.1	chr1	171345575	171345775	+	1	NA	NA	NA	-24	NM_011070	18637	Mm.10756	NM_011070	ENSMUSG00000006412	Pfdn2	ESTM27|W48336	prefoldin 2	protein-coding	0.090000	0.676617	
mm_147768.1	chr18	61375384	61375584	-	1	NA	NA	NA	24947	NM_133249	170826	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0.000000	0.407960	
mm_159171.1	chr2	104230470	104230670	-	1	NA	NA	NA	107801	NM_026634	68243	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0.005000	0.587065	
mm_106991.1	chr12	11139399	11139599	+	1	NA	NA	NA	10874	NM_173417	238076	Mm.113278	NM_173417	ENSMUSG00000043673	Kcns3	-	potassium voltage-gated channel, delayed-rectifier, subfamily S, member 3	protein-coding	0.015000	0.457711	
mm_26718.1	chr3	158897509	158897709	+	1	NA	NA	NA	-178755	NR_040750	624759	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA	0.005000	0.323383	
mm_133899.1	chr16	97547214	97547414	+	1	NA	NA	NA	11231	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.020000	0.542289	
mm_96944.1	chr11	70540735	70540935	+	1	NA	NA	NA	563	NM_001302476	18806	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	0.030000	0.547264	
mm_170856.1	chr2	180246586	180246786	-	1	NA	NA	NA	-10693	NM_025587	66481	Mm.289669	NM_025587	ENSMUSG00000039001	Rps21	1810049N11Rik|2410030A14Rik	ribosomal protein S21	protein-coding	0.025000	0.487562	-32(TTTTTTAAACCC,+,0.00)
mm_171276.1	chr3	88831336	88831536	+	1	NA	NA	NA	1051	NR_015498	319830	Mm.400394	NR_015498		1500004A13Rik	5430404N14Rik|BB132176	RIKEN cDNA 1500004A13 gene	ncRNA	0.040000	0.631841	
mm_44217.1	chr5	4757831	4758031	-	1	NA	NA	NA	285	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.100000	0.711443	
mm_154723.1	chrX	9435396	9435596	+	1	NA	NA	NA	33828	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.343284	16(GCTTTAATAGTT,+,0.00)
mm_111523.1	chr12	100187342	100187542	-	1	NA	NA	NA	-526	NR_045282	100038378	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	ENSMUSG00000072884	predicted gene 10433	ncRNA	0.070000	0.562189	
mm_112127.1	chr12	112929670	112929870	-	1	NA	NA	NA	-275	NM_010588	16450	Mm.186146	NM_010588	ENSMUSG00000002799	Jag2	D12Ggc2e|Serh|mJagged2-1|sm	jagged 2	protein-coding	0.155000	0.761194	
mm_18283.1	chr2	52530539	52530739	-	1	NA	NA	NA	27972	NM_146123	12298	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.010000	0.358209	
mm_58243.1	chr6	145048522	145048722	-	1	NA	NA	NA	190	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.100000	0.671642	
mm_93742.1	chr10	120142751	120142951	-	1	NA	NA	NA	-29886	NM_080446	117599	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.025000	0.542289	
mm_135983.1	chr16	75092484	75092684	-	1	NA	NA	NA	493477	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.015000	0.497512	-50(GCTCTTAAAGTG,+,0.00)
mm_151713.1	chr19	4625197	4625397	-	1	NA	NA	NA	320	NM_023131	19671	Mm.391143	NM_023131	ENSMUSG00000024889	Rce1	D19Ertd283e|D19Ertd98e	Ras converting CAAX endopeptidase 1	protein-coding	0.070000	0.661692	
mm_61555.1	chr7	79499882	79500082	+	1	NA	NA	NA	-44	NR_040311	101694	Mm.41661	NR_040311	ENSMUSG00000097023	Mir9-3hg	AI854517	Mir9-3 host gene	ncRNA	0.145000	0.786070	
mm_145150.1	chr18	46226986	46227186	+	1	NA	NA	NA	-14479	NM_178872	28105	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.015000	0.477612	-61(GCCTTTAGAGGC,+,0.00)
mm_4139.1	chr1	170644711	170644911	+	1	NA	NA	NA	279	NM_177068	320078	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.025000	0.562189	
mm_37182.1	chr4	117277580	117277780	-	1	NA	NA	NA	11775	NM_001310730	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.035000	0.601990	77(TTCTCTAAATGG,-,0.00)
mm_66175.1	chr7	34013206	34013406	-	1	NA	NA	NA	636	NM_001276475	233099	Mm.110829	NM_001100464	ENSMUSG00000066584	Scgb2b27	Abpbg27|Abpbg5|Scgb2b5	secretoglobin, family 2B, member 27	protein-coding	0.020000	0.452736	
mm_33648.1	chr4	133039389	133039589	+	1	NA	NA	NA	27983	NM_146155	230793	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.135000	0.756219	
mm_94866.1	chr11	24078023	24078223	+	1	NA	NA	NA	67	NM_001159289	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.030000	0.462687	
mm_70533.1	chr8	13037260	13037460	+	1	NA	NA	NA	52	NM_001242368	14058	Mm.262589	NM_007972	ENSMUSG00000031444	F10	Cf10|fX	coagulation factor X	protein-coding	0.020000	0.507463	
mm_110841.1	chr12	72939669	72939869	-	1	NA	NA	NA	-113	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	0.075000	0.597015	
mm_117599.1	chr13	89893134	89893334	-	1	NA	NA	NA	-150722	NM_001134475	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.015000	0.417910	
mm_50921.1	chr6	57606020	57606220	+	1	NA	NA	NA	25128	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.025000	0.437811	7(AACTATAAAGGG,-,0.00)
mm_2683.1	chr1	127306531	127306731	+	1	NA	NA	NA	101645	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.030000	0.562189	
mm_86355.1	chr9	123678758	123678958	-	1	NA	NA	NA	-26	NM_139142	102680	Mm.440867	NM_139142	ENSMUSG00000036814	Slc6a20a	A730081N20Rik|AU022428|Xt3s1|Xtrp3s1	solute carrier family 6 (neurotransmitter transporter), member 20A	protein-coding	0.115000	0.691542	
mm_43715.1	chr5	139406318	139406518	+	1	NA	NA	NA	31	NM_177000	319772	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.015000	0.517413	
mm_32359.1	chr4	105157499	105157699	+	1	NA	NA	NA	252	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.085000	0.616915	
mm_46478.1	chr5	105131701	105131901	-	1	NA	NA	NA	7751	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.417910	
mm_51494.1	chr6	83057986	83058186	+	1	NA	NA	NA	242	NM_033606	93838	Mm.140332	NM_033606	ENSMUSG00000009145	Dqx1	2310066E11Rik	DEAQ RNA-dependent ATPase	protein-coding	0.015000	0.557214	68(TCATTAATGGCC,+,0.00)
mm_102954.1	chr11	69664274	69664474	-	1	NA	NA	NA	1331	NR_035455	100316840		NR_035455	ENSMUSG00000088752	Mir1934	mir-1934|mmu-mir-1934	microRNA 1934	ncRNA	0.025000	0.567164	
mm_137741.1	chr17	29368870	29369070	+	1	NA	NA	NA	8056	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.020000	0.582090	-98(CCTTTTATAGTG,+,0.00),87(GACTTTTAGAGC,-,0.00),88(ACTTTTAGAGCC,+,0.00)
mm_48655.1	chr5	145872372	145872572	-	1	NA	NA	NA	7382	NM_007818	13112	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	0.000000	0.402985	
mm_167932.1	chrX	105655443	105655643	+	1	NA	NA	NA	-108934	NM_030614	80903	Mm.154768	NM_030614	ENSMUSG00000031230	Fgf16	-	fibroblast growth factor 16	protein-coding	0.005000	0.313433	-35(TTGTTTAAAAGC,-,0.00)
mm_29200.1	chr3	106766582	106766782	-	1	NA	NA	NA	23467	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.000000	0.328358	8(CCCTCTTAAAGT,-,0.00)
mm_84117.1	chr9	58526078	58526278	-	1	NA	NA	NA	14762	NM_133983	102657	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.050000	0.527363	
mm_48999.1	chr6	4756637	4756837	+	1	NA	NA	NA	9431	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.030000	0.497512	
mm_92154.1	chr10	67535447	67535647	-	1	NA	NA	NA	-2322	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.085000	0.686567	
mm_67618.1	chr7	83972325	83972525	-	1	NA	NA	NA	80425	NM_023403	67943	Mm.117365	NM_023403	ENSMUSG00000038503	Mesdc2	2210015O11Rik|AW537813|mKIAA0081|mesd|msd	mesoderm development candidate 2	protein-coding	0.000000	0.512438	-95(CCATATAGAGAC,+,0.00)
mm_92831.1	chr10	81482541	81482741	-	1	NA	NA	NA	68	NM_176954	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.140000	0.761194	
mm_32484.1	chr4	107890145	107890345	+	1	NA	NA	NA	346	NM_028754	74098	Mm.274853	NM_028754	ENSMUSG00000028608	0610037L13Rik	1110008H16Rik	RIKEN cDNA 0610037L13 gene	protein-coding	0.050000	0.592040	
mm_61970.1	chr7	90451035	90451235	+	1	NA	NA	NA	6073	NM_025460	66271	Mm.28963	NM_025460	ENSMUSG00000030615	Tmem126a	1810020E01Rik	transmembrane protein 126A	protein-coding	0.000000	0.308458	
mm_146474.1	chr18	89176877	89177077	+	1	NA	NA	NA	-20450	NM_178687	225825	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.000000	0.447761	
mm_62275.1	chr7	99579602	99579802	+	1	NA	NA	NA	27433	NR_029760	723840		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	0.030000	0.592040	
mm_27840.1	chr3	79152768	79152968	-	1	NA	NA	NA	-6993	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.015000	0.378109	
mm_118161.1	chr13	105294196	105294396	-	1	NA	NA	NA	-1282	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.125000	0.761194	
mm_138955.1	chr17	44188511	44188711	+	1	NA	NA	NA	39	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	0.080000	0.631841	
mm_154058.1	chr19	55119713	55119913	-	1	NA	NA	NA	-20366	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.000000	0.432836	
mm_33825.1	chr4	135495872	135496072	+	1	NA	NA	NA	-15	NM_030189	78806	Mm.374844	NM_030189	ENSMUSG00000028801	Stpg1	4930403G18Rik|4930555I21Rik|Mapo2	sperm tail PG rich repeat containing 1	protein-coding	0.045000	0.567164	
mm_48091.1	chr5	136987761	136987961	-	1	NA	NA	NA	98	NM_027318	70103	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	0.050000	0.631841	
mm_2586.1	chr1	118675484	118675684	+	1	NA	NA	NA	47639	NM_023755	81879	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.000000	0.427861	
mm_166038.1	chr4	129491170	129491370	+	1	NA	NA	NA	80	NM_001085491	68233	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0.085000	0.711443	
mm_164798.1	chr18	21026206	21026406	+	1	NA	NA	NA	24349	NM_207623	56515	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	0.000000	0.333333	
mm_140671.1	chr17	12940244	12940444	-	1	NA	NA	NA	52	NM_153151	224530	Mm.490312	NM_153151	ENSMUSG00000062480	Acat3	ACTL	acetyl-Coenzyme A acetyltransferase 3	protein-coding	0.075000	0.661692	
mm_168682.1	chr11	95761351	95761551	+	1	NA	NA	NA	12384	NM_201609	268469	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	0.020000	0.487562	
mm_64774.1	chr7	4996032	4996232	-	1	NA	NA	NA	-31	NM_026741	68490	Mm.76400	NM_026741	ENSMUSG00000051550	Zfp579	1110003A17Rik|Znf579	zinc finger protein 579	protein-coding	0.065000	0.686567	
mm_13945.1	chr2	121289629	121289829	+	1	NA	NA	NA	127	NM_032393	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.120000	0.676617	
mm_36230.1	chr4	63149358	63149558	-	1	NA	NA	NA	4714	NM_007443	11699	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.005000	0.507463	
mm_136690.1	chr17	6828376	6828576	+	1	NA	NA	NA	-45696	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.025000	0.492537	
mm_45702.1	chr5	83354860	83355060	-	1	NA	NA	NA	235	NM_153801	243078	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding	0.015000	0.457711	
mm_76768.1	chr8	95807365	95807565	-	1	NA	NA	NA	-3	NM_001205226	234594	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	0.115000	0.651741	
mm_119264.1	chr14	34016982	34017182	+	1	NA	NA	NA	-23996	NM_001034880	432838	Mm.318383	NM_001034880	ENSMUSG00000072624	Gm5460	EG432838	predicted gene 5460	protein-coding	0.000000	0.507463	
mm_23277.1	chr3	51660903	51661103	+	1	NA	NA	NA	-176	NM_174995	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.000000	0.497512	
mm_159436.1	chr3	119740683	119740883	-	1	NA	NA	NA	42605	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.000000	0.348259	
mm_42446.1	chr5	115431913	115432113	+	1	NA	NA	NA	2328	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.025000	0.562189	
mm_68344.1	chr7	106506424	106506624	-	1	NA	NA	NA	-65451	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.010000	0.412935	
mm_3401.1	chr1	143739508	143739708	+	1	NA	NA	NA	-7	NM_023505	69367	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	0.160000	0.776119	
mm_149450.1	chr19	11491806	11492006	+	1	NA	NA	NA	-132	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.000000	0.378109	
mm_128034.1	chr15	25363877	25364077	-	1	NA	NA	NA	49787	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.015000	0.407960	
mm_61443.1	chr7	75474989	75475189	+	1	NA	NA	NA	19555	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.000000	0.368159	
mm_99708.1	chr11	106216848	106217048	+	1	NA	NA	NA	22	NM_028074	72047	Mm.41367	NM_028074	ENSMUSG00000020705	Ddx42	1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	protein-coding	0.140000	0.711443	
mm_15720.1	chr2	164074070	164074270	+	1	NA	NA	NA	-8	NM_021420	58231	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.095000	0.706468	
mm_79678.1	chr9	59750834	59751034	+	1	NA	NA	NA	-240	NM_173018	270163	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0.125000	0.776119	
mm_114931.1	chr13	95765030	95765230	+	1	NA	NA	NA	68210	NM_010170	14064	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	0.025000	0.517413	
mm_13457.1	chr2	105668847	105669047	+	1	NA	NA	NA	51	NM_001244201	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.055000	0.567164	
mm_77723.1	chr8	126839333	126839533	-	1	NA	NA	NA	106488	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.025000	0.522388	
mm_147613.1	chr18	57244019	57244219	-	1	NA	NA	NA	-110614	NM_028447	73137	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	0.000000	0.373134	74(GCTTTAAAAATC,+,0.00)
mm_155459.1	chrX	73503026	73503226	+	1	NA	NA	NA	40	NM_177236	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.115000	0.771144	
mm_104683.1	chr11	97716815	97717015	-	1	NA	NA	NA	13481	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	0.025000	0.467662	
mm_47729.1	chr5	130171480	130171680	-	1	NA	NA	NA	-239	NM_001199059	56715	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.070000	0.616915	
mm_143212.1	chr17	62881603	62881803	-	1	NA	NA	NA	-386	NM_010109	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.095000	0.726368	
mm_98543.1	chr11	95010160	95010360	+	1	NA	NA	NA	381	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.070000	0.621891	
mm_77956.1	chr9	7571373	7571573	+	1	NA	NA	NA	77	NM_001310717	234911	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.010000	0.393035	
mm_146519.1	chr18	4336194	4336394	-	1	NA	NA	NA	16659	NM_007746	26410	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.020000	0.447761	
mm_52587.1	chr6	116652147	116652347	+	1	NA	NA	NA	1563	NM_001166580	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.025000	0.537313	
mm_58050.1	chr6	136835337	136835537	-	1	NA	NA	NA	13	NM_001039558	654818	Mm.386899	NM_001039558	ENSMUSG00000043298	Smco3	C030030A07Rik	single-pass membrane protein with coiled-coil domains 3	protein-coding	0.015000	0.522388	
mm_170526.1	chr19	33456409	33456609	-	1	NA	NA	NA	61261	NM_001323386	628236		NM_001323386	ENSMUSG00000079344	Lipo4	Gm6857	lipase, member O4	protein-coding	0.010000	0.542289	
mm_47512.1	chr5	124075673	124075873	-	1	NA	NA	NA	20025	NM_019875	56325	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.030000	0.572139	
mm_146567.1	chr18	6490814	6491014	-	1	NA	NA	NA	-57	NM_027497	13831	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1 (Drosophila)	protein-coding	0.160000	0.746269	
mm_83984.1	chr9	57421280	57421480	-	1	NA	NA	NA	18734	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.020000	0.582090	
mm_112492.1	chr13	6558371	6558571	+	1	NA	NA	NA	10314	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.000000	0.298507	
mm_47016.1	chr5	115489468	115489668	-	1	NA	NA	NA	-5084	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.045000	0.393035	-75(ATCTCTAAAAAG,-,0.00)
mm_103765.1	chr11	81593016	81593216	-	1	NA	NA	NA	-19577	NM_001033765	237880	Mm.435528	NM_001033765		1700071K01Rik	-	RIKEN cDNA 1700071K01 gene	protein-coding	0.015000	0.353234	
mm_151890.1	chr19	5798653	5798853	-	1	NA	NA	NA	-2772	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.000000	0.422886	75(GCCTCTTAAAAA,-,0.00)
mm_150536.1	chr19	39299968	39300168	+	1	NA	NA	NA	12983	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.000000	0.348259	
mm_170564.1	chr19	46957840	46958040	-	1	NA	NA	NA	4411	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.000000	0.427861	87(GTCTATAAGTGG,-,0.00)
mm_146930.1	chr18	31998044	31998244	-	1	NA	NA	NA	38787	NM_032394	17922	Mm.440013	NM_032394	ENSMUSG00000024388	Myo7b	-	myosin VIIB	protein-coding	0.025000	0.572139	
mm_154022.1	chr19	53390440	53390640	-	1	NA	NA	NA	33	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	0.125000	0.696517	
mm_3495.1	chr1	150106513	150106713	+	1	NA	NA	NA	6582	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.442786	-25(GAGCTTTAAAGC,-,0.00),-23(GCTTTAAAGCTC,+,0.00)
mm_151774.1	chr19	5302401	5302601	-	1	NA	NA	NA	4170	NM_001024717	545276	Mm.447174	NM_001024717	ENSMUSG00000047658	Gal3st3	-	galactose-3-O-sulfotransferase 3	protein-coding	0.010000	0.567164	
mm_21979.1	chr2	167383466	167383666	-	1	NA	NA	NA	-34388	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.015000	0.442786	
mm_166464.1	chr5	140830216	140830416	-	1	NA	NA	NA	115	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.170000	0.840796	
mm_172109.1	chr6	3200782	3200982	+	1	NA	NA	NA	-87637	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.080000	0.562189	
mm_74539.1	chr8	9976135	9976335	-	1	NA	NA	NA	88	NM_176953	319583	Mm.80584	NM_176953	ENSMUSG00000049717	Lig4	5830471N16Rik|tiny	ligase IV, DNA, ATP-dependent	protein-coding	0.060000	0.631841	
mm_92735.1	chr10	80917954	80918154	-	1	NA	NA	NA	191	NM_010722	16907	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0.115000	0.671642	
mm_24011.1	chr3	87377858	87378058	+	1	NA	NA	NA	1571	NM_001136236	229499	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	0.015000	0.522388	
mm_80264.1	chr9	72924990	72925190	+	1	NA	NA	NA	-560	NM_028116	72135	Mm.273605	NM_028116	ENSMUSG00000034910	Pygo1	2600014C22Rik	pygopus 1	protein-coding	0.055000	0.691542	
mm_67843.1	chr7	98562242	98562442	-	1	NA	NA	NA	68120	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.010000	0.437811	
mm_37866.1	chr4	132345597	132345797	-	1	NA	NA	NA	53	NM_001197082	100088	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	0.130000	0.736318	
mm_78822.1	chr9	44093775	44093975	+	1	NA	NA	NA	-7895	NM_001190314	259172	Mm.227110	NM_147126	ENSMUSG00000034739	Mfrp	rd6	membrane frizzled-related protein	protein-coding	0.030000	0.452736	
mm_149032.1	chr19	8802449	8802649	+	1	NA	NA	NA	19	NM_001098237	75291	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	0.045000	0.567164	
mm_66009.1	chr7	30563170	30563370	-	1	NA	NA	NA	-70	NM_170760	233073	Mm.34790	NM_170760	ENSMUSG00000078765	U2af1l4	AA407033|AF419339|AI451269|AW553050|U2af26	U2 small nuclear RNA auxiliary factor 1-like 4	protein-coding	0.095000	0.567164	
mm_47623.1	chr5	125277061	125277261	-	1	NA	NA	NA	63933	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.025000	0.492537	
mm_114041.1	chr13	53448154	53448354	+	1	NA	NA	NA	24526	NM_013601	17702	Mm.1763	NM_013601	ENSMUSG00000021469	Msx2	BB122635|Hox-8|Hox8|Hox8.1	msh homeobox 2	protein-coding	0.020000	0.537313	
mm_27948.1	chr3	79825372	79825572	-	1	NA	NA	NA	17190	NM_027495	70652	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.020000	0.472637	
mm_9547.1	chr1	173921173	173921373	-	1	NA	NA	NA	-8227	NM_001033450	381308	Mm.490248	NM_001033450	ENSMUSG00000026536	Ifi211	A730048F03|Ifi205b|Mnda|ifi-205-B	interferon activated gene 211	protein-coding	0.000000	0.398010	
mm_9638.1	chr1	177064395	177064595	-	1	NA	NA	NA	184272	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.000000	0.388060	-77(CTGTCTATAAGC,-,0.00)
mm_156357.1	chrX	139335796	139335996	+	1	NA	NA	NA	2213	NM_011635	22037	Mm.1297	NM_011635	ENSMUSG00000051257	Trap1a	Tra-P1A	tumor rejection antigen P1A	protein-coding	0.005000	0.562189	
mm_103864.1	chr11	83429720	83429920	-	1	NA	NA	NA	-299	NM_001013759	237891	Mm.340523	NM_001013759	ENSMUSG00000020686	Gas2l2	-	growth arrest-specific 2 like 2	protein-coding	0.035000	0.582090	
mm_20867.1	chr2	148441700	148441900	-	1	NA	NA	NA	1735	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.030000	0.512438	
mm_79918.1	chr9	65551195	65551395	+	1	NA	NA	NA	28792	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.020000	0.592040	-36(GCCCTTATAAGG,-,0.00),-34(CCTTATAAGGGA,+,0.00)
mm_1418.1	chr1	67160804	67161004	+	1	NA	NA	NA	37877	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.015000	0.432836	
mm_58396.1	chr7	3213715	3213915	+	1	NA	NA	NA	-4811	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.015000	0.477612	-34(TACCATAAAAGC,-,0.00)
mm_123109.1	chr14	55884153	55884353	-	1	NA	NA	NA	3	NM_019820	56410	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0.010000	0.567164	
mm_136786.1	chr17	10807734	10807934	+	1	NA	NA	NA	32357	NM_027032	69310	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.015000	0.442786	76(GCTTTTAAAAAA,+,0.00)
mm_156205.1	chrX	134465878	134466078	+	1	NA	NA	NA	10512	NM_028958	74469	Mm.103259	NM_028958	ENSMUSG00000009596	Taf7l	4933438I11Rik|Taf2q	TATA-box binding protein associated factor 7 like	protein-coding	0.010000	0.402985	
mm_144627.1	chr18	32938822	32939022	+	1	NA	NA	NA	-119	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.065000	0.616915	
mm_46669.1	chr5	108774927	108775127	-	1	NA	NA	NA	11185	NR_040691	73295	Mm.416858	NR_040691	ENSMUSG00000101762	1700047L14Rik	-	RIKEN cDNA 1700047L14 gene	ncRNA	0.100000	0.616915	
mm_118059.1	chr13	102693278	102693478	-	1	NA	NA	NA	-180	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.015000	0.467662	
mm_64228.1	chr7	141691104	141691304	+	1	NA	NA	NA	864	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.045000	0.552239	
mm_103202.1	chr11	70652079	70652279	-	1	NA	NA	NA	2471	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.025000	0.532338	
mm_97676.1	chr11	79962500	79962700	+	1	NA	NA	NA	-213	NM_144826	216987	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.070000	0.532338	
mm_122434.1	chr14	45218890	45219090	-	1	NA	NA	NA	435	NM_172597	70561	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.040000	0.497512	
mm_146618.1	chr18	10100851	10101051	-	1	NA	NA	NA	-70802	NM_001038589	59025	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0.005000	0.308458	
mm_74044.1	chr8	122006826	122007026	+	1	NA	NA	NA	28902	NR_106096	102466915		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	0.025000	0.572139	
mm_146348.1	chr18	82543851	82544051	+	1	NA	NA	NA	-10512	NM_001025256	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.010000	0.462687	4(CACCATAAAAGA,-,0.00)
mm_132325.1	chr16	33794251	33794451	+	1	NA	NA	NA	314	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.015000	0.482587	
mm_12920.1	chr2	84952482	84952682	+	1	NA	NA	NA	15936	NM_021398	58207	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	0.005000	0.393035	
mm_165530.1	chr2	178455440	178455640	+	1	NA	NA	NA	25025	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.010000	0.522388	
mm_169726.1	chr15	80781324	80781524	-	1	NA	NA	NA	-17186	NM_177124	213988	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.015000	0.398010	
mm_168863.1	chr12	30911449	30911649	-	1	NA	NA	NA	63	NM_021330	11431	Mm.359831	NM_021330	ENSMUSG00000044573	Acp1	4632432E04Rik|AI427468|Acp-1|LMW-PTP|Lmptp	acid phosphatase 1, soluble	protein-coding	0.100000	0.626866	
mm_9839.1	chr1	184034202	184034402	-	1	NA	NA	NA	-159	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.085000	0.601990	
mm_115972.1	chr13	24094402	24094602	-	1	NA	NA	NA	-103288	NM_145399	214189	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.010000	0.567164	
mm_135403.1	chr16	44745843	44746043	-	1	NA	NA	NA	420	NM_001159329	66067	Mm.34520	NM_025332	ENSMUSG00000022668	Gtpbp8	0610037H22Rik	GTP-binding protein 8 (putative)	protein-coding	0.095000	0.636816	
mm_127161.1	chr15	98634661	98634861	+	1	NA	NA	NA	-6	NM_007581	12297	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0.120000	0.776119	
mm_81144.1	chr9	106839600	106839800	+	1	NA	NA	NA	17724	NM_001015507	321006	Mm.440089	NM_001015507	ENSMUSG00000040325	Vprbp	AI447437|B930007L02Rik|mKIAA0800	Vpr (HIV-1) binding protein	protein-coding	0.005000	0.338308	
mm_59738.1	chr7	28813916	28814116	+	1	NA	NA	NA	3126	NM_177301	15388	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.055000	0.522388	
mm_71625.1	chr8	57436339	57436539	+	1	NA	NA	NA	-19484	NM_009136	20284	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.025000	0.517413	
mm_106809.1	chr12	6005699	6005899	+	1	NA	NA	NA	629297	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	0.005000	0.497512	
mm_15712.1	chr2	164017982	164018182	+	1	NA	NA	NA	-7142	NM_001114079	381404	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	0.020000	0.467662	
mm_171634.1	chr4	20971666	20971866	-	1	NA	NA	NA	-193098	NM_172987	269513	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding	0.015000	0.472637	
mm_36000.1	chr4	56673884	56674084	-	1	NA	NA	NA	67441	NM_025271	11471	Mm.251434	NM_025271	ENSMUSG00000070980	Actl7b	Tact1	actin-like 7b	protein-coding	0.010000	0.452736	
mm_126489.1	chr15	81626277	81626477	+	1	NA	NA	NA	-37512	NM_001289712	214669	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	l(3)mbt-like 2 (Drosophila)	protein-coding	0.015000	0.472637	
mm_155649.1	chrX	85776846	85777046	+	1	NA	NA	NA	-127	NM_001294138	14933	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	0.075000	0.661692	
mm_147753.1	chr18	61211386	61211586	-	1	NA	NA	NA	110	NM_007885	13521	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	0.130000	0.716418	-34(GGGTATTAAAGG,-,0.00)
mm_64927.1	chr7	16273844	16274044	-	1	NA	NA	NA	-252	NM_001136270	66300	Mm.218698	NM_001136270	ENSMUSG00000091811	Inafm1	2610014I16Rik|Prr24	InaF motif containing 1	protein-coding	0.040000	0.641791	
mm_169573.1	chr15	21656389	21656589	+	1	NA	NA	NA	545037	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.000000	0.447761	
mm_148255.1	chr18	80742937	80743137	-	1	NA	NA	NA	-29966	NM_001164109	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.010000	0.432836	
mm_32279.1	chr4	102833578	102833778	+	1	NA	NA	NA	73543	NM_001285859	73094	Mm.54201	NM_144906	ENSMUSG00000028524	Sgip1	3110007P09Rik|SGIP1alpha|gag	SH3-domain GRB2-like (endophilin) interacting protein 1	protein-coding	0.000000	0.407960	
mm_134825.1	chr16	26073871	26074071	-	1	NA	NA	NA	31813	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.000000	0.422886	
mm_146040.1	chr18	69592849	69593049	+	1	NA	NA	NA	247228	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.020000	0.412935	
mm_19217.1	chr2	84650378	84650578	-	1	NA	NA	NA	32	NM_001085453	12388	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.035000	0.482587	35(GTTTCTTAAAGG,-,0.00)
mm_112543.1	chr13	11939387	11939587	+	1	NA	NA	NA	167458	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.015000	0.477612	
mm_121724.1	chr14	16575379	16575579	-	1	NA	NA	NA	-3	NM_001289762	218772	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	0.045000	0.532338	
mm_33788.1	chr4	134923522	134923722	+	1	NA	NA	NA	-3	NM_023665	27981	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.090000	0.606965	
mm_88676.1	chr10	80046920	80047120	+	1	NA	NA	NA	-146	NR_110342	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.010000	0.592040	
mm_162941.1	chr10	128492798	128492998	-	1	NA	NA	NA	111	NM_001317220	17904	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.005000	0.477612	
mm_161799.1	chr17	54298705	54298905	-	1	NA	NA	NA	229	NM_022025	63993	Mm.155241	NM_022025	ENSMUSG00000023945	Slc5a7	CHT1	solute carrier family 5 (choline transporter), member 7	protein-coding	0.060000	0.582090	46(GCCCTTATAAAG,-,0.00),48(CCTTATAAAGAG,+,0.00)
mm_134196.1	chr16	10993037	10993237	-	1	NA	NA	NA	-16	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.095000	0.716418	
mm_123009.1	chr14	54994449	54994649	-	1	NA	NA	NA	0	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.000000	0.572139	-34(CCATATATACAG,+,0.00)
mm_131765.1	chr16	22892664	22892864	+	1	NA	NA	NA	749	NM_001276449	11625	Mm.197554	NM_013465	ENSMUSG00000022868	Ahsg	-	alpha-2-HS-glycoprotein	protein-coding	0.015000	0.412935	
mm_17563.1	chr2	30205584	30205784	-	1	NA	NA	NA	15	NM_172404	70266	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	0.045000	0.522388	-40(GCCTCTTTAAAG,-,0.00),-39(CCTCTTTAAAGG,-,0.00),-38(CTCTTTAAAGGA,+,0.00),-38(CTCTTTAAAGGA,-,0.00)
mm_53315.1	chr6	129183021	129183221	+	1	NA	NA	NA	2506	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.005000	0.373134	
mm_99869.1	chr11	109398776	109398976	+	1	NA	NA	NA	-27070	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.020000	0.532338	89(CTTTTTATACAT,+,0.00)
mm_109291.1	chr12	109559392	109559592	+	1	NA	NA	NA	-4200	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.010000	0.422886	
mm_67949.1	chr7	100495586	100495786	-	1	NA	NA	NA	2328	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.010000	0.567164	
mm_90766.1	chr10	5804511	5804711	-	1	NA	NA	NA	854	NM_025995	67141	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	0.020000	0.507463	40(GCCTTTTAAAAA,-,0.00),41(CCTTTTAAAAAG,+,0.00),41(CCTTTTAAAAAG,-,0.00)
mm_154382.1	chrM	11257	11457	+	1	NA	NA	NA	NA	NA									0.010000	0.313433	
mm_95724.1	chr11	54568106	54568306	+	1	NA	NA	NA	-27940	NM_001252498	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.005000	0.378109	70(GCCTTTTAAGAC,-,0.00),71(CCTTTTAAGACT,+,0.00)
mm_46336.1	chr5	101851392	101851592	-	1	NA	NA	NA	86362	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.000000	0.517413	
mm_168384.1	chr1	123477098	123477298	+	1	NA	NA	NA	568361	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.323383	
mm_144178.1	chr18	6765020	6765220	+	1	NA	NA	NA	-47	NM_181070	19330	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.070000	0.656716	
mm_53352.1	chr6	129350236	129350436	+	1	NA	NA	NA	92	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.005000	0.402985	
mm_93035.1	chr10	88338529	88338729	-	1	NA	NA	NA	18446	NM_027878	71712	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.005000	0.393035	
mm_28900.1	chr3	98314901	98315101	-	1	NA	NA	NA	24968	NM_016966	236539	Mm.16898	NM_016966	ENSMUSG00000053398	Phgdh	3-PGDH|3PGDH|4930479N23|A10|PGAD|PGD|PGDH|SERA	3-phosphoglycerate dehydrogenase	protein-coding	0.020000	0.457711	
mm_81649.1	chr9	110953641	110953841	+	1	NA	NA	NA	2196	NM_028838	74249	Mm.307615	NM_028838	ENSMUSG00000032495	Lrrc2	2400002D05Rik|4933431K03Rik	leucine rich repeat containing 2	protein-coding	0.045000	0.492537	
mm_114923.1	chr13	95325179	95325379	+	1	NA	NA	NA	454	NM_028106	72114	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	0.125000	0.686567	-23(GTGTCTTTAAGG,-,0.00),-21(GTCTTTAAGGGG,-,0.00),-20(TCTTTAAGGGGG,+,0.00)
mm_7343.1	chr1	105988735	105988935	-	1	NA	NA	NA	-1571	NM_001122676	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.015000	0.437811	
mm_127918.1	chr15	9555856	9556056	-	1	NA	NA	NA	-26080	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.000000	0.343284	
mm_19923.1	chr2	116049019	116049219	-	1	NA	NA	NA	15500	NM_001346044	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.030000	0.502488	
mm_120867.1	chr14	75229816	75230016	+	1	NA	NA	NA	-12371	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.000000	0.457711	
mm_9137.1	chr1	170867638	170867838	-	1	NA	NA	NA	33	NM_001081304	226641	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.080000	0.601990	
mm_5227.1	chr1	14309770	14309970	-	1	NA	NA	NA	329	NM_001310459	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.120000	0.736318	
mm_81100.1	chr9	106429372	106429572	+	1	NA	NA	NA	61	NM_009082	19944	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	0.080000	0.611940	-65(CCCTTTCTAGGC,+,0.00)
mm_147082.1	chr18	35627136	35627336	-	1	NA	NA	NA	-9	NM_011397	20522	Mm.22702	NM_011397	ENSMUSG00000024354	Slc23a1	D18Ucla2|SVCT1|Slc23a2|YSPL3	solute carrier family 23 (nucleobase transporters), member 1	protein-coding	0.020000	0.507463	
mm_101539.1	chr11	33527255	33527455	-	1	NA	NA	NA	-13609	NM_023146	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.005000	0.353234	
mm_24596.1	chr3	93445212	93445412	+	1	NA	NA	NA	2982	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.070000	0.582090	
mm_24377.1	chr3	90231587	90231787	+	1	NA	NA	NA	90	NM_206924	23922	Mm.13912	NM_206924	ENSMUSG00000027937	Jtb	Gm622	jumping translocation breakpoint	protein-coding	0.115000	0.681592	
mm_113599.1	chr13	41016229	41016429	+	1	NA	NA	NA	79	NM_025387	66154	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0.085000	0.651741	
mm_170049.1	chr17	26922717	26922917	+	1	NA	NA	NA	1855	NR_105933	102466211		NR_105933	ENSMUSG00000098586	Gm27775	Mir6967|Mir6967-1|mmu-mir-6967|mmu-mir-6967-1	predicted gene, 27775	ncRNA	0.010000	0.577114	
mm_2398.1	chr1	93685818	93686018	+	1	NA	NA	NA	343	NM_016778	51800	Mm.3295	NM_016778	ENSMUSG00000026278	Bok	matador|mtd	BCL2-related ovarian killer	protein-coding	0.115000	0.706468	
mm_157349.1	chrX	36989430	36989630	-	1	NA	NA	NA	165	NM_001177324	56526	Mm.260036	NM_019942	ENSMUSG00000050379	Sept6	2810035H17Rik|C920001C06Rik|Sep6|mKIAA0128	septin 6	protein-coding	0.045000	0.626866	
mm_91594.1	chr10	40349964	40350164	-	1	NA	NA	NA	756	NM_001291816	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.095000	0.686567	
mm_127670.1	chr15	102671813	102672013	+	1	NA	NA	NA	-47	NR_030460	751542		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	0.065000	0.656716	
mm_10344.1	chr2	11655443	11655643	+	1	NA	NA	NA	12751	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.005000	0.472637	
mm_63274.1	chr7	126762792	126762992	+	1	NA	NA	NA	3266	NM_011952	26417	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.040000	0.552239	
mm_102488.1	chr11	60222742	60222942	-	1	NA	NA	NA	-2215	NM_001313979	20787	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP-1a|SREBP1|SREBP1c|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.125000	0.716418	
mm_170562.1	chr19	45993475	45993675	-	1	NA	NA	NA	4913	NM_198296	71617	Mm.210949	NM_198296	ENSMUSG00000039901	9130011E15Rik	AI431055|AW050122	RIKEN cDNA 9130011E15 gene	protein-coding	0.025000	0.512438	
mm_43287.1	chr5	134099682	134099882	+	1	NA	NA	NA	34	NM_030719	80909	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding	0.085000	0.631841	
mm_169989.1	chr17	15052439	15052639	-	1	NA	NA	NA	-520	NM_001034891	381062	Mm.393767	NM_183133	ENSMUSG00000036552	Ermard	2210404J11Rik|2410011O22Rik|AI448938	ER membrane associated RNA degradation	protein-coding	0.000000	0.477612	
mm_44648.1	chr5	28209870	28210070	-	1	NA	NA	NA	198	NM_001310511	269637	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.080000	0.621891	
mm_31467.1	chr4	49549587	49549787	+	1	NA	NA	NA	-141	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.000000	0.447761	
mm_119178.1	chr14	32165725	32165925	+	1	NA	NA	NA	36	NM_019744	27057	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.090000	0.631841	
mm_61061.1	chr7	49974956	49975156	+	1	NA	NA	NA	-294	NM_001037906	338352	Mm.383528	NM_001037906	ENSMUSG00000055409	Nell1	B230343H07Rik|l7R6	NEL-like 1	protein-coding	0.105000	0.716418	
mm_91137.1	chr10	19718605	19718805	-	1	NA	NA	NA	6118	NM_172786	237313	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	0.010000	0.447761	
mm_18330.1	chr2	57238661	57238861	-	1	NA	NA	NA	379	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.040000	0.507463	
mm_15787.1	chr2	164425139	164425339	+	1	NA	NA	NA	17949	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.005000	0.283582	-42(AGCTATAAATAG,-,0.00)
mm_6174.1	chr1	65100335	65100535	-	1	NA	NA	NA	2928	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.025000	0.477612	3(GCCCATATATGC,-,0.00)
mm_2302.1	chr1	91539908	91540108	+	1	NA	NA	NA	-557	NM_001039126	65247	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	0.045000	0.611940	
mm_12571.1	chr2	72997173	72997373	+	1	NA	NA	NA	-16827	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.010000	0.497512	
mm_7672.1	chr1	128588749	128588949	-	1	NA	NA	NA	3450	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.015000	0.393035	
mm_107938.1	chr12	71875949	71876149	+	1	NA	NA	NA	-13494	NM_001286452	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.020000	0.517413	
mm_115708.1	chr13	14523090	14523290	-	1	NA	NA	NA	36	NM_001081348	94253	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.030000	0.582090	
mm_56767.1	chr6	116193364	116193564	-	1	NA	NA	NA	-90	NM_177412	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.175000	0.791045	
mm_128483.1	chr15	50889953	50890153	-	1	NA	NA	NA	-12	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.080000	0.532338	-84(GTCTCTTTAAGG,-,0.00)
mm_25670.1	chr3	121953154	121953354	+	1	NA	NA	NA	-72	NM_172525	214137	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.140000	0.771144	
mm_156743.1	chrX	159944310	159944510	+	1	NA	NA	NA	1717	NM_001290664	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.000000	0.298507	9(CTCTTTATAGGG,+,0.00),9(CTCTTTATAGGG,-,0.00),11(CTTTATAGGGCC,+,0.00)
mm_72954.1	chr8	92357907	92358107	+	1	NA	NA	NA	211	NM_018826	54352	Mm.101153	NM_018826	ENSMUSG00000031737	Irx5	-	Iroquois related homeobox 5 (Drosophila)	protein-coding	0.115000	0.776119	
mm_141119.1	chr17	26090183	26090383	-	1	NA	NA	NA	-119	NM_011933	26378	Mm.292869	NM_011933	ENSMUSG00000036775	Decr2	-	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	protein-coding	0.050000	0.676617	
mm_36950.1	chr4	109102549	109102749	-	1	NA	NA	NA	15387	NM_173350	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.010000	0.383085	
mm_113757.1	chr13	44736574	44736774	+	1	NA	NA	NA	5403	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.010000	0.393035	-65(CTTTTTTAAAGG,-,0.00),-64(TTTTTTAAAGGG,+,0.00)
mm_50588.1	chr6	49059896	49060096	+	1	NA	NA	NA	-13799	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.005000	0.402985	
mm_53928.1	chr6	4717116	4717316	-	1	NA	NA	NA	29988	NM_001130188	20392	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	0.015000	0.502488	
mm_4270.1	chr1	171559041	171559241	+	1	NA	NA	NA	-52	NM_018729	18106	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0.010000	0.527363	
mm_158990.1	chr1	133610150	133610350	-	1	NA	NA	NA	30	NM_009227	20643	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	0.095000	0.631841	
mm_2395.1	chr1	93685526	93685726	+	1	NA	NA	NA	51	NM_016778	51800	Mm.3295	NM_016778	ENSMUSG00000026278	Bok	matador|mtd	BCL2-related ovarian killer	protein-coding	0.110000	0.696517	
mm_110303.1	chr12	32819967	32820167	-	1	NA	NA	NA	-268	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.065000	0.656716	
mm_112730.1	chr13	19208729	19208929	+	1	NA	NA	NA	186984	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.527363	
mm_75140.1	chr8	35394113	35394313	-	1	NA	NA	NA	18472	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.015000	0.472637	
mm_9298.1	chr1	171638627	171638827	-	1	NA	NA	NA	3173	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.005000	0.402985	-69(TCCCTTTAAAGA,-,0.00),-68(CCCTTTAAAGAT,+,0.00)
mm_38482.1	chr4	140742542	140742742	-	1	NA	NA	NA	1	NM_153106	242726	Mm.271661	NM_153106	ENSMUSG00000040935	Padi6	Pad6|Padi5|ePAD	peptidyl arginine deiminase, type VI	protein-coding	0.010000	0.557214	
mm_848.1	chr1	52008531	52008731	+	1	NA	NA	NA	391	NM_011487	20849	Mm.1550	NM_011487	ENSMUSG00000062939	Stat4	-	signal transducer and activator of transcription 4	protein-coding	0.030000	0.527363	
mm_126319.1	chr15	79690823	79691023	+	1	NA	NA	NA	27	NM_013818	14904	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	0.135000	0.696517	
mm_39757.1	chr5	29735901	29736101	+	1	NA	NA	NA	-65	NR_028426	332993	Mm.473746	NR_028426		Gm5129	EG332993|ENSMUSG00000053121	predicted gene 5129	ncRNA	0.135000	0.686567	
mm_100253.1	chr11	117326550	117326750	+	1	NA	NA	NA	-5065	NM_017380	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.000000	0.577114	
mm_5435.1	chr1	34819846	34820046	-	1	NA	NA	NA	18224	NM_183019	226970	Mm.41604	NM_183019	ENSMUSG00000037509	Arhgef4	9330140K16Rik|Asef|ENSMUSG00000070955	Rho guanine nucleotide exchange factor (GEF) 4	protein-coding	0.015000	0.557214	
mm_148545.1	chr19	4711182	4711382	+	1	NA	NA	NA	59	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	0.015000	0.507463	
mm_128570.1	chr15	57693677	57693877	-	1	NA	NA	NA	-890	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.080000	0.592040	
mm_168806.1	chr12	20614962	20615162	+	1	NA	NA	NA	200717	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.105000	0.741294	
mm_134265.1	chr16	13780546	13780746	-	1	NA	NA	NA	-53	NM_001039521	106298	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	0.095000	0.651741	
mm_11076.1	chr2	27677229	27677429	+	1	NA	NA	NA	128	NM_011305	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.190000	0.796020	
mm_77678.1	chr8	125474866	125475066	-	1	NA	NA	NA	17744	NM_001081337	244668	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.035000	0.557214	
mm_28936.1	chr3	98882125	98882325	-	1	NA	NA	NA	11005	NM_019545	56185	Mm.281874	NM_019545	ENSMUSG00000027870	Hao2	AI325478|Hao-2|Hao3|Haox3	hydroxyacid oxidase 2	protein-coding	0.010000	0.477612	
mm_129041.1	chr15	75086942	75087142	-	1	NA	NA	NA	24907	NM_001099217	100041546	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0.000000	0.348259	29(TGCTTTTTAAGG,-,0.00),31(CTTTTTAAGGCT,+,0.00)
mm_87640.1	chr10	58371354	58371554	+	1	NA	NA	NA	0	NM_201242	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.025000	0.582090	
mm_17451.1	chr2	28555832	28556032	-	1	NA	NA	NA	7471	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.000000	0.407960	
mm_30253.1	chr3	146615496	146615696	-	1	NA	NA	NA	2	NM_019957	56629	Mm.25853	NM_019957	ENSMUSG00000028185	Dnase2b	AI526873|Dlad|DnaseIIb	deoxyribonuclease II beta	protein-coding	0.015000	0.497512	
mm_148242.1	chr18	80611107	80611307	-	1	NA	NA	NA	-66661	NR_028424	100039348	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.025000	0.572139	
mm_170835.1	chr2	177065360	177065560	-	1	NA	NA	NA	-137647	NM_001305133	102639598	Mm.379980	NM_029813	ENSMUSG00000074527	Gm14296	-	predicted gene 14296	protein-coding	0.020000	0.482587	
mm_49993.1	chr6	41047378	41047578	+	1	NA	NA	NA	-11969	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.497512	
mm_83466.1	chr9	45268766	45268966	-	1	NA	NA	NA	283	NM_008348	16154	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0.040000	0.537313	
mm_68773.1	chr7	122021075	122021275	-	1	NA	NA	NA	23	NM_028758	74105	Mm.29619	NM_028758	ENSMUSG00000030872	Gga2	1200007E24Rik|mKIAA1080	golgi associated, gamma adaptin ear containing, ARF binding protein 2	protein-coding	0.095000	0.716418	
mm_28302.1	chr3	89214147	89214347	-	1	NA	NA	NA	88	NM_001161824	17827	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	0.100000	0.686567	
mm_210.1	chr1	16661471	16661671	+	1	NA	NA	NA	-3620	NM_027415	70397	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	0.005000	0.492537	-66(AACCATATAAGG,-,0.00)
mm_52372.1	chr6	113077268	113077468	+	1	NA	NA	NA	-124	NR_027008	14910	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	0.140000	0.776119	
mm_8058.1	chr1	135375126	135375326	-	1	NA	NA	NA	-163	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.030000	0.666667	
mm_62980.1	chr7	120173808	120174008	+	1	NA	NA	NA	50	NM_028085	72074	Mm.23165	NM_028085	ENSMUSG00000030909	Anks4b	2010013E14Rik|AI956809|Harp	ankyrin repeat and sterile alpha motif domain containing 4B	protein-coding	0.020000	0.532338	
mm_75584.1	chr8	61549704	61549904	-	1	NA	NA	NA	41365	NM_001293774	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.120000	0.746269	
mm_124087.1	chr14	78732638	78732838	-	1	NA	NA	NA	-7649	NM_001081336	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.155000	0.771144	
mm_31013.1	chr4	40721032	40721232	+	1	NA	NA	NA	1185	NR_077221	622208	Mm.471544	NR_077221		Gm6297	-	predicted gene 6297	ncRNA	0.025000	0.447761	
mm_28596.1	chr3	94472811	94473011	-	1	NA	NA	NA	680	NM_025506	66353	Mm.46405	NM_025506	ENSMUSG00000028139	Riiad1	2310007A19Rik|Ncrna00166	regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1	protein-coding	0.065000	0.601990	-76(GGTTTTATAAAG,-,0.00),-74(TTTTATAAAGGG,+,0.00)
mm_72051.1	chr8	71367124	71367324	+	1	NA	NA	NA	7	NM_025917	67023	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.085000	0.567164	
mm_130797.1	chr15	101692471	101692671	-	1	NA	NA	NA	1734	NM_008476	16687	Mm.302399	NM_008476	ENSMUSG00000058354	Krt6a	2310016L08Rik|Krt2-6a|Krt2-6c|MK6a|mK6[a]	keratin 6A	protein-coding	0.010000	0.457711	
mm_20168.1	chr2	122305525	122305725	-	1	NA	NA	NA	6725	NM_025777	66811	Mm.171333	NM_025777	ENSMUSG00000027225	Duoxa2	9030623N16Rik|Nip2	dual oxidase maturation factor 2	protein-coding	0.040000	0.582090	
mm_165619.1	chr3	60501771	60501971	+	1	NA	NA	NA	692	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.020000	0.462687	-57(TGCCTTATATGG,-,0.00),-55(CCTTATATGGAG,+,0.00)
mm_71590.1	chr8	54954872	54955072	+	1	NA	NA	NA	244	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.015000	0.442786	
mm_120081.1	chr14	57744692	57744892	+	1	NA	NA	NA	1331	NM_015771	50523	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.025000	0.442786	
mm_173167.1	chrX	41994904	41995104	-	1	NA	NA	NA	-72832	NM_009688	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.040000	0.592040	
mm_172382.1	chr7	13124149	13124349	-	1	NA	NA	NA	8109	NM_134227	171261	Mm.377215	NM_134227	ENSMUSG00000070815	Vmn1r87	V1rk1	vomeronasal 1 receptor 87	protein-coding	0.055000	0.557214	
mm_85461.1	chr9	105494880	105495080	-	1	NA	NA	NA	153	NM_175025	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.145000	0.766169	
mm_91033.1	chr10	18210725	18210925	-	1	NA	NA	NA	65	NM_001195036	100045792	Mm.380617	NM_001195036	ENSMUSG00000071392	Ect2l	C330021H03Rik|ENSMUSG00000071392|Gm10331	epithelial cell transforming sequence 2 oncogene-like	protein-coding	0.020000	0.562189	
mm_38844.1	chr4	149178104	149178304	-	1	NA	NA	NA	-11497	NM_001081274	110208	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.010000	0.502488	
mm_2087.1	chr1	87694767	87694967	+	1	NA	NA	NA	-61144	NM_029846	77040	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.010000	0.412935	
mm_86074.1	chr9	114778824	114779024	-	1	NA	NA	NA	3069	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.010000	0.482587	
mm_82957.1	chr9	35570331	35570531	-	1	NA	NA	NA	-362	NM_029762	76832	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	hydrolethalus syndrome 1	protein-coding	0.110000	0.711443	
mm_132316.1	chr16	33752535	33752735	+	1	NA	NA	NA	-41402	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.005000	0.402985	
mm_15357.1	chr2	156312507	156312707	+	1	NA	NA	NA	97	NM_020255	19018	Mm.389346	NM_020255	ENSMUSG00000046229	Scand1	2310003H23Rik|Leap1|PGC-2|Ppargc2	SCAN domain-containing 1	protein-coding	0.095000	0.592040	
mm_43434.1	chr5	136083992	136084192	+	1	NA	NA	NA	176	NM_001039103	54153	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.080000	0.646766	
mm_86978.1	chr10	25432498	25432698	+	1	NA	NA	NA	24230	NM_013511	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.030000	0.567164	-97(GCTTTTCTAGGG,+,0.00)
mm_138547.1	chr17	35263775	35263975	+	1	NA	NA	NA	752	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.115000	0.696517	
mm_51865.1	chr6	90550450	90550650	+	1	NA	NA	NA	-298	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.050000	0.592040	-17(CTTTTTATAGAC,+,0.00)
mm_52139.1	chr6	97956983	97957183	+	1	NA	NA	NA	27266	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.020000	0.452736	
mm_96235.1	chr11	62551369	62551569	+	1	NA	NA	NA	-35	NR_002875	218963	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	0.100000	0.606965	2(GCATAAATAGCG,+,0.00)
mm_158640.1	chrX	155216290	155216490	-	1	NA	NA	NA	59	NM_009121	20229	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	0.070000	0.577114	10(GGACTTAAAAGG,-,0.00)
mm_64728.1	chr7	4684838	4685038	-	1	NA	NA	NA	25	NM_024172	66245	Mm.6803	NM_024172	ENSMUSG00000063802	Hspbp1	1500019G21Rik	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	protein-coding	0.045000	0.567164	
mm_21238.1	chr2	156144065	156144265	-	1	NA	NA	NA	12	NM_001164217	67067	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	0.110000	0.666667	
mm_6139.1	chr1	64737617	64737817	-	1	NA	NA	NA	33	NM_001042659	14367	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0.135000	0.771144	
mm_110913.1	chr12	76216866	76217066	-	1	NA	NA	NA	29780	NM_019784	80384	Mm.78551	NM_019784	ENSMUSG00000021056	Tex21	4931406F04Rik|4931412D23Rik|4931421K24Rik|tsec-2	testis expressed gene 21	protein-coding	0.030000	0.532338	
mm_125148.1	chr15	30646577	30646777	+	1	NA	NA	NA	-392449	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.095000	0.691542	
mm_166355.1	chr5	121233047	121233247	+	1	NA	NA	NA	12928	NM_181421	269700	Mm.184589	NM_181421	ENSMUSG00000042744	Gm15800	A130010L24|AU042671|BC019639|EG545802|OTTMUSG00000026283|mKIAA0614	predicted gene 15800	protein-coding	0.000000	0.417910	
mm_104124.1	chr11	86757241	86757441	-	1	NA	NA	NA	151	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.040000	0.651741	
mm_4022.1	chr1	165722997	165723197	+	1	NA	NA	NA	-15003	NM_001038846	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.010000	0.457711	
mm_52772.1	chr6	121210616	121210816	+	1	NA	NA	NA	-18	NM_017379	53857	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0.045000	0.681592	
mm_77023.1	chr8	108584553	108584753	-	1	NA	NA	NA	24	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.030000	0.517413	-36(CCCTTTAAATGA,-,0.00),23(GCGTCTATAGGG,-,0.00)
mm_131530.1	chr16	17646506	17646706	+	1	NA	NA	NA	136	NM_001166164	72315	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.140000	0.776119	
mm_100179.1	chr11	116624297	116624497	+	1	NA	NA	NA	-145	NM_001167680	217344	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.065000	0.626866	16(CCACTTATGGCC,+,0.00)
mm_161353.1	chr14	55511289	55511489	+	1	NA	NA	NA	29	NM_009947	12891	Mm.5249	NM_009947	ENSMUSG00000022212	Cpne6	AU067659|BB076446	copine VI	protein-coding	0.015000	0.562189	
mm_165677.1	chr3	90587183	90587383	+	1	NA	NA	NA	-2964	NM_001195760	628324	Mm.33816	NM_001195760	ENSMUSG00000094018	S100a2	CaN19|EG628324|S100L	S100 calcium binding protein A2	protein-coding	0.020000	0.582090	
mm_68727.1	chr7	120202014	120202214	-	1	NA	NA	NA	-126	NM_016669	12971	Mm.9114	NM_016669	ENSMUSG00000030905	Crym	-	crystallin, mu	protein-coding	0.055000	0.631841	
mm_166824.1	chr7	18402804	18403004	-	1	NA	NA	NA	29151	NM_054063	114871	Mm.362025	NM_054063	ENSMUSG00000030373	Psg28	cea16	pregnancy-specific glycoprotein 28	protein-coding	0.065000	0.706468	
mm_98835.1	chr11	97436198	97436398	+	1	NA	NA	NA	-13862	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.020000	0.601990	
mm_100844.1	chr11	5761949	5762149	-	1	NA	NA	NA	-101	NR_015577	76508	Mm.260203	NR_015577	ENSMUSG00000083844	Ube2d-ps	1600028I17Rik|2210015D19Rik|AI596465	ubiquitin-conjugating enzyme E2D, pseudogene	ncRNA	0.115000	0.686567	
mm_141597.1	chr17	32425188	32425388	-	1	NA	NA	NA	-1121	NM_001271478	57757	Mm.86752	NM_021319	ENSMUSG00000079563	Pglyrp2	C730002N09Rik|PGRP-L|Pglyrpl|tagL	peptidoglycan recognition protein 2	protein-coding	0.000000	0.557214	
mm_35111.1	chr4	9661000	9661200	-	1	NA	NA	NA	8062	NM_023066	65973	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.025000	0.467662	2(CTTTTTATAAGC,+,0.00),2(CTTTTTATAAGC,-,0.00)
mm_103295.1	chr11	72474920	72475120	-	1	NA	NA	NA	7	NM_001276383	216892	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0.010000	0.547264	
mm_102577.1	chr11	61720006	61720206	-	1	NA	NA	NA	693	NM_001033227	109342	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0.015000	0.512438	
mm_23141.1	chr3	38885782	38885982	+	1	NA	NA	NA	-1058	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.120000	0.721393	
mm_110092.1	chr12	25097161	25097361	-	1	NA	NA	NA	-1169	NM_010496	15902	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.015000	0.427861	88(CCTTTAATACAC,+,0.00)
mm_83097.1	chr9	40321182	40321382	-	1	NA	NA	NA	-12190	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.015000	0.497512	
mm_169209.1	chr13	66487861	66488061	-	1	NA	NA	NA	-46843	NM_001290196	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.005000	0.462687	
mm_19689.1	chr2	103467666	103467866	-	1	NA	NA	NA	17387	NM_009804	12359	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0.025000	0.477612	22(ACTTTTAAGGAG,+,0.00)
mm_108905.1	chr12	100203553	100203753	+	1	NA	NA	NA	3509	NM_001313934	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.030000	0.487562	
mm_17406.1	chr2	27246666	27246866	-	1	NA	NA	NA	537	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.005000	0.547264	
mm_26892.1	chr3	19140400	19140600	-	1	NA	NA	NA	22565	NM_028840	74252	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0.005000	0.393035	-68(CTTTTTAAAGGA,+,0.00)
mm_24160.1	chr3	88531411	88531611	+	1	NA	NA	NA	-884	NM_001029890	72640	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0.080000	0.691542	
mm_80378.1	chr9	75410061	75410261	+	1	NA	NA	NA	-23	NR_040719	71274	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	0.140000	0.746269	
mm_126174.1	chr15	78565887	78566087	+	1	NA	NA	NA	6796	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.040000	0.587065	
mm_161568.1	chr16	20325076	20325276	-	1	NA	NA	NA	228	NM_183158	224044	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.000000	0.373134	-13(GTTTTTATGGGA,+,0.00)
mm_154119.1	chr19	57197258	57197458	-	1	NA	NA	NA	273	NM_001103177	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.060000	0.567164	
mm_24794.1	chr3	95545406	95545606	+	1	NA	NA	NA	-14171	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.040000	0.517413	
mm_41242.1	chr5	88765106	88765306	+	1	NA	NA	NA	193	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.110000	0.691542	
mm_101354.1	chr11	23739841	23740041	-	1	NA	NA	NA	31029	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.010000	0.402985	
mm_167119.1	chr7	119597161	119597361	+	1	NA	NA	NA	-20567	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.010000	0.472637	
mm_17951.1	chr2	37146470	37146670	-	1	NA	NA	NA	-40922	NM_147051	259053	Mm.377810	NM_147051	ENSMUSG00000075377	Olfr362	MOR158-1	olfactory receptor 362	protein-coding	0.015000	0.492537	
mm_77383.1	chr8	120101211	120101411	-	1	NA	NA	NA	161	NM_133967	102193	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.145000	0.756219	
mm_75544.1	chr8	57487666	57487866	-	1	NA	NA	NA	94	NM_021788	60406	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	0.060000	0.626866	
mm_82958.1	chr9	35570347	35570547	-	1	NA	NA	NA	-378	NM_029762	76832	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	hydrolethalus syndrome 1	protein-coding	0.110000	0.706468	
mm_167243.1	chr8	20892567	20892767	+	1	NA	NA	NA	0	NM_001039119	654453	Mm.237840	NM_001039119	ENSMUSG00000074454	Defb33	BD-33|EG654453	defensin beta 33	protein-coding	0.000000	0.497512	
mm_140314.1	chr17	86223586	86223786	+	1	NA	NA	NA	55901	NM_011104	18754	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0.005000	0.353234	
mm_57867.1	chr6	129623803	129624003	-	1	NA	NA	NA	-39	NM_001286018	27007	Mm.8217	NM_033078	ENSMUSG00000030149	Klrk1	D6H12S2489E|NKG2-D|Nkg2d	killer cell lectin-like receptor subfamily K, member 1	protein-coding	0.010000	0.437811	
mm_34271.1	chr4	141423984	141424184	+	1	NA	NA	NA	3305	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.030000	0.606965	
mm_90295.1	chr10	125388446	125388646	+	1	NA	NA	NA	-60011	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.005000	0.542289	
mm_1448.1	chr1	67230448	67230648	+	1	NA	NA	NA	107521	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.338308	
mm_47066.1	chr5	116422730	116422930	-	1	NA	NA	NA	34	NM_030704	80888	Mm.21549	NM_030704	ENSMUSG00000041548	Hspb8	AU018630|AW413033|Cryac|D5Ucla4|E2IG1|H11|H11K|HSP20-like|HSP22	heat shock protein 8	protein-coding	0.040000	0.597015	
mm_135709.1	chr16	55523574	55523774	-	1	NA	NA	NA	28943	NR_039578	100628589		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.015000	0.432836	
mm_141834.1	chr17	34632291	34632491	-	1	NA	NA	NA	2705	NM_030890	260297	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31	proline-rich transmembrane protein 1	protein-coding	0.085000	0.656716	
mm_24476.1	chr3	90692787	90692987	+	1	NA	NA	NA	2834	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.000000	0.462687	
mm_125044.1	chr15	25812619	25812819	+	1	NA	NA	NA	-30579	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.025000	0.497512	
mm_32496.1	chr4	108391355	108391555	+	1	NA	NA	NA	-7800	NM_001099303	545667	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	OTTMUSG00000008243	family with sequence similarity 159, member A	protein-coding	0.015000	0.477612	
mm_96185.1	chr11	61672107	61672307	+	1	NA	NA	NA	-12203	NM_178618	69640	Mm.458559	NM_178618	ENSMUSG00000042377	Fam83g	2310040C09Rik|AI506990|wly	family with sequence similarity 83, member G	protein-coding	0.020000	0.537313	
mm_116938.1	chr13	56073952	56074152	-	1	NA	NA	NA	61498	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.030000	0.442786	
mm_78239.1	chr9	21625852	21626052	+	1	NA	NA	NA	9783	NM_001174078	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.015000	0.507463	
mm_143658.1	chr17	79713615	79713815	-	1	NA	NA	NA	1326	NM_009994	13078	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0.105000	0.646766	
mm_121851.1	chr14	20660780	20660980	-	1	NA	NA	NA	3694	NM_001310432	68760	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	0.035000	0.577114	
mm_119348.1	chr14	41105457	41105657	+	1	NA	NA	NA	524	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.010000	0.452736	
mm_92383.1	chr10	76442686	76442886	-	1	NA	NA	NA	126	NM_008787	18541	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	0.090000	0.656716	
mm_128980.1	chr15	74833449	74833649	-	1	NA	NA	NA	8094	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.005000	0.412935	
mm_131220.1	chr16	8850715	8850915	+	1	NA	NA	NA	20715	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.000000	0.388060	
mm_152921.1	chr19	28010986	28011186	-	1	NA	NA	NA	80	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.025000	0.537313	
mm_44727.1	chr5	31047783	31047983	-	1	NA	NA	NA	196	NM_177870	330064	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	0.055000	0.552239	
mm_134858.1	chr16	28445589	28445789	-	1	NA	NA	NA	386	NM_183064	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.050000	0.462687	
mm_127644.1	chr15	102484071	102484271	+	1	NA	NA	NA	13539	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.020000	0.497512	
mm_75498.1	chr8	52196955	52197155	-	1	NA	NA	NA	-1314647	NM_001205054	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.060000	0.507463	
mm_165273.1	chr2	76370251	76370451	+	1	NA	NA	NA	367	NM_153405	241490	Mm.33310	NM_153405	ENSMUSG00000042369	Rbm45	Drb1|Drbp1|G430095G15Rik	RNA binding motif protein 45	protein-coding	0.070000	0.641791	
mm_97489.1	chr11	78326218	78326418	+	1	NA	NA	NA	-2104	NM_201406	276846	Mm.295908	NM_201406	ENSMUSG00000041958	Pigs	BC058979|Gm393|Gm689	phosphatidylinositol glycan anchor biosynthesis, class S	protein-coding	0.030000	0.557214	
mm_167357.1	chr8	84236911	84237111	-	1	NA	NA	NA	31	NM_172503	212168	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	0.130000	0.741294	-33(GAGTCTTAAAGG,-,0.00),-30(TCTTAAAGGGGC,+,0.00)
mm_153171.1	chr19	34493533	34493733	-	1	NA	NA	NA	-18498	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.005000	0.452736	
mm_5605.1	chr1	39577224	39577424	-	1	NA	NA	NA	23	NM_001033135	67702	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4|OTTMUSG00000026591	ring finger protein 149	protein-coding	0.170000	0.776119	
mm_116142.1	chr13	29690702	29690902	-	1	NA	NA	NA	164871	NR_131896	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0.015000	0.378109	
mm_54635.1	chr6	38737376	38737576	-	1	NA	NA	NA	74407	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.015000	0.472637	-54(GCATATATAGTG,+,0.00)
mm_36052.1	chr4	57301710	57301910	-	1	NA	NA	NA	27	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.075000	0.646766	
mm_1103.1	chr1	59763585	59763785	+	1	NA	NA	NA	-594	NM_007561	12168	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0.130000	0.741294	
mm_169693.1	chr15	74955591	74955791	+	1	NA	NA	NA	585	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.075000	0.646766	
mm_146802.1	chr18	20740935	20741135	-	1	NA	NA	NA	5369	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.020000	0.482587	
mm_63528.1	chr7	127917948	127918148	+	1	NA	NA	NA	5531	NM_026370	67773	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|Myst1	K(lysine) acetyltransferase 8	protein-coding	0.010000	0.398010	
mm_96923.1	chr11	70509642	70509842	+	1	NA	NA	NA	4468	NM_029360	75604	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.020000	0.532338	
mm_44550.1	chr5	24598811	24599011	-	1	NA	NA	NA	3091	NM_025891	66993	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.080000	0.691542	
mm_114648.1	chr13	77134989	77135189	+	1	NA	NA	NA	379	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0.095000	0.696517	
mm_108238.1	chr12	77331943	77332143	+	1	NA	NA	NA	-56821	NM_001252615	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.005000	0.417910	
mm_81704.1	chr9	111271857	111272057	+	1	NA	NA	NA	112	NM_175266	77781	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	0.085000	0.651741	
mm_77789.1	chr9	3026567	3026767	+	1	NA	NA	NA	12076	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.015000	0.333333	
mm_77202.1	chr8	113846022	113846222	-	1	NA	NA	NA	2717	NM_172466	208936	Mm.167471	NM_172466	ENSMUSG00000053399	Adamts18	9630038L21|ADAMTS21|E130314N14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	protein-coding	0.010000	0.333333	
mm_66416.1	chr7	44529513	44529713	-	1	NA	NA	NA	2458	NM_019866	272382	Mm.8012	NM_019866	ENSMUSG00000008193	Spib	Spi-B	Spi-B transcription factor (Spi-1/PU.1 related)	protein-coding	0.020000	0.562189	
mm_150632.1	chr19	41475831	41476031	+	1	NA	NA	NA	-49321	NM_001326287	627352	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0.015000	0.467662	
mm_104294.1	chr11	90389592	90389792	-	1	NA	NA	NA	1225	NM_172563	217082	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0.075000	0.651741	
mm_90737.1	chr10	5367548	5367748	-	1	NA	NA	NA	120666	NM_001347711	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.030000	0.482587	
mm_7392.1	chr1	111864847	111865047	-	1	NA	NA	NA	-29	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0.105000	0.711443	
mm_31106.1	chr4	42916580	42916780	+	1	NA	NA	NA	-563	NM_001346526	230085	Mm.240965	NM_172690	ENSMUSG00000036062	Phf24	GINIP|N28178	PHD finger protein 24	protein-coding	0.030000	0.552239	
mm_169379.1	chr14	37742392	37742592	-	1	NA	NA	NA	-607170	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.005000	0.477612	-33(CCTTTTATAAGA,+,0.00)
mm_141649.1	chr17	33663169	33663369	-	1	NA	NA	NA	22189	NM_001109913	76936	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	0.010000	0.373134	
mm_167083.1	chr7	101500546	101500746	+	1	NA	NA	NA	25270	NR_029791	387157		NR_029791	ENSMUSG00000065446	Mir139	Mirn139|mir-139|mmu-mir-139	microRNA 139	ncRNA	0.010000	0.452736	
mm_56090.1	chr6	87346258	87346458	-	1	NA	NA	NA	4557	NM_025466	66283	Mm.46414	NM_025466	ENSMUSG00000030050	Gkn1	2200002K21Rik|AMP-18|BRICD1|Fov	gastrokine 1	protein-coding	0.010000	0.432836	
mm_61697.1	chr7	81114732	81114932	+	1	NA	NA	NA	33	NM_001004184	434203	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	0.015000	0.542289	
mm_119675.1	chr14	52638362	52638562	+	1	NA	NA	NA	-142767	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.000000	0.383085	
mm_53938.1	chr6	4816213	4816413	-	1	NA	NA	NA	69007	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.005000	0.388060	
mm_161704.1	chr17	24474049	24474249	+	1	NA	NA	NA	265	NM_175682	319259	Mm.258355	NM_175682	ENSMUSG00000045744	Bricd5	9930021D14Rik	BRICHOS domain containing 5	protein-coding	0.015000	0.616915	
mm_46909.1	chr5	114372541	114372741	-	1	NA	NA	NA	7864	NM_001159941	330171	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	0.025000	0.537313	
mm_142784.1	chr17	50156142	50156342	-	1	NA	NA	NA	34255	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.010000	0.492537	-27(GCCCTTTTAAGA,-,0.00),-26(CCCTTTTAAGAG,-,0.00),-25(CCTTTTAAGAGG,+,0.00),-24(CTTTTAAGAGGA,+,0.00)
mm_28196.1	chr3	88161214	88161414	-	1	NA	NA	NA	16471	NR_045997	76642	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.020000	0.601990	
mm_45590.1	chr5	74405014	74405214	-	1	NA	NA	NA	126628	NM_178672	212986	Mm.134147	NM_178672	ENSMUSG00000062110	Scfd2	E430013M20Rik|STXBP1L1	Sec1 family domain containing 2	protein-coding	0.020000	0.532338	
mm_126089.1	chr15	77905475	77905675	+	1	NA	NA	NA	23419	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.040000	0.601990	
mm_52159.1	chr6	98018921	98019121	+	1	NA	NA	NA	27238	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.318408	
mm_115373.1	chr13	113048296	113048496	+	1	NA	NA	NA	-2008	NM_027127	69590	Mm.12715	NM_027127	ENSMUSG00000021760	Gpx8	2310016C16Rik|AU017063	glutathione peroxidase 8 (putative)	protein-coding	0.005000	0.527363	
mm_75434.1	chr8	47289303	47289503	-	1	NA	NA	NA	-1	NM_001114311	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.100000	0.716418	
mm_120009.1	chr14	55672174	55672374	+	1	NA	NA	NA	39	NM_177992	105446	Mm.390685	NM_177992	ENSMUSG00000002326	Gmpr2	1810008P16Rik|5730544D12Rik|AA959850|GMPR 2	guanosine monophosphate reductase 2	protein-coding	0.060000	0.542289	
mm_60711.1	chr7	45277248	45277448	+	1	NA	NA	NA	-5525	NM_001033176	76713	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0.085000	0.661692	
mm_104701.1	chr11	97995799	97995999	-	1	NA	NA	NA	274	NM_207231	217151	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.050000	0.646766	
mm_154075.1	chr19	56424492	56424692	-	1	NA	NA	NA	27463	NM_007611	12369	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.020000	0.472637	
mm_18185.1	chr2	45111750	45111950	-	1	NA	NA	NA	-410	NR_110571	433424	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|OTTMUSG00000012358|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0.010000	0.502488	
mm_159966.1	chr6	91986659	91986859	+	1	NA	NA	NA	7794	NM_172731	232237	Mm.295740	NM_172731	ENSMUSG00000034037	Fgd5	C330025N11Rik|ZFYVE23|mFLJ00274	FYVE, RhoGEF and PH domain containing 5	protein-coding	0.015000	0.472637	
mm_125531.1	chr15	57976045	57976245	+	1	NA	NA	NA	-9758	NM_173862	239463	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.045000	0.537313	
mm_164304.1	chr15	103897335	103897535	-	1	NA	NA	NA	1865	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.025000	0.407960	
mm_109279.1	chr12	109547349	109547549	+	1	NA	NA	NA	2051	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.000000	0.472637	
mm_153719.1	chr19	44406456	44406656	-	1	NA	NA	NA	1153	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.030000	0.567164	
mm_55362.1	chr6	57535282	57535482	-	1	NA	NA	NA	44	NM_175523	243382	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.015000	0.417910	
mm_80327.1	chr9	75037579	75037779	+	1	NA	NA	NA	-53	NM_021548	59046	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	0.105000	0.686567	
mm_63513.1	chr7	127875741	127875941	+	1	NA	NA	NA	982	NM_146259	244219	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.125000	0.746269	
mm_171337.1	chr4	102645706	102645906	-	1	NA	NA	NA	55963	NM_001177981	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.005000	0.626866	
mm_41202.1	chr5	88328322	88328522	+	1	NA	NA	NA	11110	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.005000	0.457711	
mm_97444.1	chr11	78188368	78188568	+	1	NA	NA	NA	41	NM_001159482	19376	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	0.050000	0.616915	
mm_163843.1	chr14	19417931	19418131	-	1	NA	NA	NA	184556	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.010000	0.358209	
mm_168738.1	chr12	115158753	115158953	-	1	NA	NA	NA	536941	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.005000	0.447761	
mm_151520.1	chr19	58739348	58739548	+	1	NA	NA	NA	10561	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.000000	0.353234	
mm_91735.1	chr10	45578024	45578224	-	1	NA	NA	NA	295	NM_172473	209462	Mm.458633	NM_172473	ENSMUSG00000038822	Hace1	1700042J16Rik|A730034A22Rik|BC025474	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	protein-coding	0.180000	0.781095	
mm_142690.1	chr17	47739260	47739460	-	1	NA	NA	NA	1429	NM_001161723	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.025000	0.587065	
mm_30419.1	chr3	152266037	152266237	-	1	NA	NA	NA	183	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.040000	0.527363	
mm_138560.1	chr17	35320443	35320643	+	1	NA	NA	NA	-15	NM_010390	15006	Mm.466882	NM_010390	ENSMUSG00000079507	H2-Q1	H-2Q1|Q1|Q1b|Q1d|Q1k|Qa-1|Qa1|Qed-1	histocompatibility 2, Q region locus 1	protein-coding	0.040000	0.616915	
mm_79552.1	chr9	57972419	57972619	+	1	NA	NA	NA	-25505	NM_001346787	13070	Mm.302865	NM_019779	ENSMUSG00000032323	Cyp11a1	Cyp11a|Cypxia1|D9Ertd411e|P450scc|Scc|cscc	cytochrome P450, family 11, subfamily a, polypeptide 1	protein-coding	0.025000	0.562189	
mm_24669.1	chr3	94680963	94681163	+	1	NA	NA	NA	-12510	NM_019414	20342	Mm.225405	NM_019414	ENSMUSG00000068877	Selenbp2	AP56|Lpsb2	selenium binding protein 2	protein-coding	0.035000	0.492537	
mm_147464.1	chr18	46636231	46636431	-	1	NA	NA	NA	38627	NM_010120	13664	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.010000	0.482587	
mm_5336.1	chr1	23922316	23922516	-	1	NA	NA	NA	-35	NM_028534	98366	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	0.160000	0.781095	
mm_31459.1	chr4	49059139	49059339	+	1	NA	NA	NA	-223	NM_178756	272031	Mm.299460	NM_178756	ENSMUSG00000063446	Plppr1	E130309F12Rik|Lppr1|PRG-3|mKIAA4247	phospholipid phosphatase related 1	protein-coding	0.055000	0.621891	
mm_87189.1	chr10	39413431	39413631	+	1	NA	NA	NA	43732	NM_001122893	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.005000	0.393035	
mm_141787.1	chr17	34305609	34305809	-	1	NA	NA	NA	-158	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.000000	0.487562	
mm_38727.1	chr4	145236682	145236882	-	1	NA	NA	NA	10088	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.020000	0.552239	
mm_47404.1	chr5	123132178	123132378	-	1	NA	NA	NA	351	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.080000	0.661692	
mm_161631.1	chr16	88932108	88932308	-	1	NA	NA	NA	56	NM_133359	170939	Mm.188445	NM_133359	ENSMUSG00000057174	Krtap19-9b	Krtap16-10b|Krtap16.10L	keratin associated protein 19-9B	protein-coding	0.010000	0.517413	
mm_137370.1	chr17	25518376	25518576	+	1	NA	NA	NA	-21188	NM_001191008	20609	Mm.353282	NM_011425	ENSMUSG00000050824	Sstr5	Smstr5|sst5	somatostatin receptor 5	protein-coding	0.050000	0.666667	
mm_131323.1	chr16	12450255	12450455	+	1	NA	NA	NA	-361035	NR_040507	75493	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.005000	0.477612	
mm_94927.1	chr11	29548132	29548332	+	1	NA	NA	NA	-192	NM_001033865	78294	Mm.180003	NM_024277	ENSMUSG00000020460	Rps27a	0610006J14Rik|Uba52|Ubb|Ubc	ribosomal protein S27A	protein-coding	0.015000	0.472637	
mm_34436.1	chr4	147553167	147553367	+	1	NA	NA	NA	-10	NM_001014397	433804	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154|OTTMUSG00000010673	zinc finger protein 985	protein-coding	0.025000	0.522388	
mm_113669.1	chr13	42709595	42709795	+	1	NA	NA	NA	114	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.045000	0.626866	
mm_26490.1	chr3	145292423	145292623	+	1	NA	NA	NA	51	NM_001317733	71355	Mm.235570	NM_027770	ENSMUSG00000028197	Col24a1	5430404K19Rik	collagen, type XXIV, alpha 1	protein-coding	0.055000	0.572139	
mm_49232.1	chr6	17198006	17198206	+	1	NA	NA	NA	-1	NR_102304	319682	Mm.136046	NR_102304	ENSMUSG00000085171	D830026I12Rik	-	RIKEN cDNA D830026I12 gene	ncRNA	0.025000	0.462687	
mm_157885.1	chrX	75843129	75843329	-	1	NA	NA	NA	-166	NM_001346520	102866	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	0.010000	0.412935	28(TGGTTTTAAAAG,-,0.00),30(GTTTTAAAAGTG,+,0.00)
mm_116593.1	chr13	48537731	48537931	-	1	NA	NA	NA	86	NR_029731	387252		NR_029731	ENSMUSG00000105621	Mirlet7f-1	Mirlet7f1|Mirnlet7f1|let-7f-1	microRNA let7f-1	ncRNA	0.000000	0.353234	
mm_112798.1	chr13	20445187	20445387	+	1	NA	NA	NA	-27703	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.000000	0.402985	
mm_79051.1	chr9	46229077	46229277	+	1	NA	NA	NA	547	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.025000	0.532338	
mm_7172.1	chr1	92127850	92128050	-	1	NA	NA	NA	52391	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.025000	0.497512	
mm_73128.1	chr8	94857384	94857584	+	1	NA	NA	NA	34	NM_009090	20021	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	0.130000	0.696517	
mm_89441.1	chr10	91171664	91171864	+	1	NA	NA	NA	-145	NM_001080130	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.115000	0.696517	-34(CAGTTTAAAAGG,-,0.00)
mm_99972.1	chr11	113751887	113752087	+	1	NA	NA	NA	-172	NM_001163346	56699	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.065000	0.606965	
mm_173226.1	chrX	7671220	7671420	-	1	NA	NA	NA	70	NM_019755	18824	Mm.18565	NM_019755	ENSMUSG00000031146	Plp2	mIMA4	proteolipid protein 2	protein-coding	0.080000	0.686567	
mm_4238.1	chr1	171388828	171389028	+	1	NA	NA	NA	-32	NM_001005508	226652	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	0.030000	0.577114	
mm_129087.1	chr15	75909200	75909400	-	1	NA	NA	NA	44	NM_001285433	66656	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0.100000	0.681592	
mm_104979.1	chr11	100248861	100249061	-	1	NA	NA	NA	-59	NM_008470	16666	Mm.422799	NM_008470	ENSMUSG00000053797	Krt16	AI324768|CK-16|K16|Krt1-16	keratin 16	protein-coding	0.010000	0.587065	-35(GCATATAAAAGA,-,0.00)
mm_137492.1	chr17	26951571	26951771	+	1	NA	NA	NA	-3552	NR_037244	100526534		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0.020000	0.656716	
mm_101823.1	chr11	46698962	46699162	-	1	NA	NA	NA	-232	NM_001161355	171284	Mm.234654	NM_134249	ENSMUSG00000040413	Timd2	AA816106|AU019358|AU019662|C78111|G9D3|TIM-2|Tim2	T cell immunoglobulin and mucin domain containing 2	protein-coding	0.015000	0.417910	
mm_14041.1	chr2	122234737	122234937	+	1	NA	NA	NA	-2	NM_146126	20322	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	0.070000	0.676617	
mm_33806.1	chr4	135120550	135120750	+	1	NA	NA	NA	5	NM_019732	12399	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.025000	0.646766	
mm_47862.1	chr5	134611791	134611991	-	1	NA	NA	NA	3134	NM_022964	56743	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0.025000	0.552239	
mm_74205.1	chr8	123892851	123893051	+	1	NA	NA	NA	1824	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.060000	0.616915	
mm_54853.1	chr6	42592259	42592459	-	1	NA	NA	NA	5013	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.010000	0.318408	
mm_166885.1	chr7	27487045	27487245	+	1	NA	NA	NA	192	NM_018820	55942	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0.085000	0.636816	
mm_72630.1	chr8	84662903	84663103	+	1	NA	NA	NA	-151	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.035000	0.527363	
mm_64450.1	chr7	142658832	142659032	+	1	NA	NA	NA	-128	NM_010514	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.080000	0.676617	
mm_57221.1	chr6	123261907	123262107	-	1	NA	NA	NA	-100	NM_001163161	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.000000	0.343284	
mm_136368.1	chr16	92816943	92817143	-	1	NA	NA	NA	9031	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.005000	0.462687	
mm_16833.1	chr2	11493915	11494115	-	1	NA	NA	NA	8075	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.025000	0.482587	
mm_33203.1	chr4	126314037	126314237	+	1	NA	NA	NA	7566	NM_133883	100206	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	0.005000	0.343284	
mm_19798.1	chr2	110050375	110050575	-	1	NA	NA	NA	4	NR_040508	75517	Mm.363927	NR_040508	ENSMUSG00000086186	Ccdc34os	1700024P03Rik	coiled-coil domain containing 34, opposite strand	ncRNA	0.005000	0.437811	-23(GCTTTTAGAATC,+,0.00)
mm_120413.1	chr14	65266628	65266828	+	1	NA	NA	NA	27	NM_015795	50759	Mm.65308	NM_015795	ENSMUSG00000034532	Fbxo16	4932435C24Rik|Fbx16	F-box protein 16	protein-coding	0.025000	0.537313	
mm_50958.1	chr6	58862870	58863070	+	1	NA	NA	NA	29270	NM_028705	73998	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0.020000	0.417910	
mm_124842.1	chr15	9370601	9370801	+	1	NA	NA	NA	35103	NM_144845	223337	Mm.422853	NM_144845	ENSMUSG00000049152	Ugt3a2	AI313915	UDP glycosyltransferases 3 family, polypeptide A2	protein-coding	0.000000	0.343284	
mm_18851.1	chr2	75676155	75676355	-	1	NA	NA	NA	16965	NR_033513	627828	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	0.035000	0.462687	
mm_144652.1	chr18	34220899	34221099	+	1	NA	NA	NA	15	NM_007462	11789	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	0.095000	0.696517	
mm_33877.1	chr4	136172281	136172481	+	1	NA	NA	NA	107	NM_177733	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.065000	0.477612	
mm_21008.1	chr2	152376503	152376703	-	1	NA	NA	NA	-37	NM_001009948	228777	Mm.330667	NM_001009948	ENSMUSG00000059361	Nrsn2	Gm123|Neurensin-2	neurensin 2	protein-coding	0.060000	0.686567	
mm_107443.1	chr12	36326224	36326424	+	1	NA	NA	NA	12155	NM_025312	66042	Mm.43375	NM_025312	ENSMUSG00000036169	Sostdc1	0610006G05Rik|Sostl|USAG-1|Wise|ectodin	sclerostin domain containing 1	protein-coding	0.005000	0.373134	70(CTTTTTAGAGCC,+,0.00)
mm_58422.1	chr7	3293031	3293231	+	1	NA	NA	NA	103	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.035000	0.616915	
mm_164983.1	chr19	10077348	10077548	+	1	NA	NA	NA	24055	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	0.015000	0.537313	
mm_99060.1	chr11	99155079	99155279	+	1	NA	NA	NA	-102	NM_007719	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.010000	0.532338	-80(CCTTTTAAGTTG,+,0.00)
mm_160584.1	chr9	63602414	63602614	-	1	NA	NA	NA	-21	NM_001311098	78250	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	0.120000	0.731343	
mm_99435.1	chr11	102432694	102432894	+	1	NA	NA	NA	2472	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.030000	0.567164	
mm_133225.1	chr16	76403252	76403452	+	1	NA	NA	NA	-30303	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.035000	0.552239	
mm_30161.1	chr3	144186419	144186619	-	1	NA	NA	NA	15813	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.010000	0.378109	-64(TCCTCTAAAGGG,-,0.00),-63(CCTCTAAAGGGG,+,0.00)
mm_78338.1	chr9	25277483	25277683	+	1	NA	NA	NA	25144	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.005000	0.308458	
mm_73930.1	chr8	119918225	119918425	+	1	NA	NA	NA	7965	NM_001310630	22224	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	0.005000	0.452736	
mm_150156.1	chr19	32224106	32224306	+	1	NA	NA	NA	-13193	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.005000	0.457711	-35(CACTTTATATGG,-,0.00),-33(CTTTATATGGAG,+,0.00)
mm_37711.1	chr4	129490990	129491190	-	1	NA	NA	NA	-100	NM_001085491	68233	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0.050000	0.616915	
mm_119149.1	chr14	31494258	31494458	+	1	NA	NA	NA	619	NM_025907	67011	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	0.030000	0.497512	
mm_60822.1	chr7	45705317	45705517	+	1	NA	NA	NA	170	NM_016974	13170	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.055000	0.592040	
mm_70788.1	chr8	22506401	22506601	+	1	NA	NA	NA	-29622	NM_001146117	102032	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	0.025000	0.452736	
mm_116242.1	chr13	33920798	33920998	-	1	NA	NA	NA	-15134	NR_040707	68808	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0.000000	0.393035	
mm_107636.1	chr12	52216558	52216758	+	1	NA	NA	NA	118912	NM_029760	76826	Mm.244781	NM_029760	ENSMUSG00000035142	Nubpl	2410170E07Rik	nucleotide binding protein-like	protein-coding	0.005000	0.273632	
mm_140855.1	chr17	23700091	23700291	-	1	NA	NA	NA	-16165	NM_020293	56863	Mm.491368	NM_020293	ENSMUSG00000066720	Cldn9	nmf329	claudin 9	protein-coding	0.090000	0.691542	
mm_28343.1	chr3	89402560	89402760	-	1	NA	NA	NA	-10	NM_020517	57275	Mm.482283	NM_020517	ENSMUSG00000078173	Lenep	AU018355|Lep503	lens epithelial protein	protein-coding	0.010000	0.567164	
mm_119006.1	chr14	29021308	29021508	+	1	NA	NA	NA	3200	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding	0.015000	0.527363	
mm_56171.1	chr6	88000422	88000622	-	1	NA	NA	NA	18839	NR_026990	434064	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	0.010000	0.512438	
mm_119228.1	chr14	33293948	33294148	+	1	NA	NA	NA	77225	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.010000	0.393035	
mm_55174.1	chr6	51987740	51987940	-	1	NA	NA	NA	24709	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.000000	0.388060	
mm_80561.1	chr9	83587861	83588061	+	1	NA	NA	NA	39623	NM_172507	212531	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.020000	0.432836	-64(CTCCTTTAAAAC,-,0.00),-62(CCTTTAAAACTA,+,0.00)
mm_162342.1	chr1	48582587	48582787	+	1	NA	NA	NA	-1115562	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA	0.000000	0.343284	0(TTTTTTAGAGTC,+,0.00)
mm_86983.1	chr10	25441331	25441531	+	1	NA	NA	NA	33063	NM_013511	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.010000	0.537313	
mm_79988.1	chr9	67012968	67013168	+	1	NA	NA	NA	30803	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.010000	0.532338	
mm_147723.1	chr18	60848844	60849044	-	1	NA	NA	NA	20	NM_011552	21453	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0.085000	0.671642	
mm_46823.1	chr5	113163819	113164019	-	1	NA	NA	NA	-606	NM_172884	243219	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.040000	0.532338	
mm_69330.1	chr7	128740318	128740518	-	1	NA	NA	NA	11	NM_145955	210711	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0.120000	0.736318	
mm_161610.1	chr16	44943590	44943790	+	1	NA	NA	NA	12	NM_001128132	74603	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0.010000	0.467662	
mm_118478.1	chr14	11696955	11697155	+	1	NA	NA	NA	143502	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.000000	0.388060	
mm_151350.1	chr19	55897846	55898046	+	1	NA	NA	NA	2625	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.005000	0.482587	
mm_160980.1	chr11	102604648	102604848	+	1	NA	NA	NA	317	NM_020510	57265	Mm.36416	NM_020510	ENSMUSG00000050288	Fzd2	AL033370|AW456835|Fz10|Fzd10|Mfz10|Mfz10a	frizzled class receptor 2	protein-coding	0.110000	0.796020	
mm_115044.1	chr13	99939496	99939696	+	1	NA	NA	NA	-38913	NM_001081493	27220	Mm.75498	NM_013732	ENSMUSG00000021647	Cartpt	Cart	CART prepropeptide	protein-coding	0.015000	0.462687	
mm_170675.1	chr2	121480890	121481090	+	1	NA	NA	NA	-6967	NM_001081975	100034361	Mm.270393	NM_001081975	ENSMUSG00000048222	Mfap1b	-	microfibrillar-associated protein 1B	protein-coding	0.020000	0.373134	
mm_141444.1	chr17	29842249	29842449	-	1	NA	NA	NA	45533	NM_001081160	74762	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0.075000	0.681592	
mm_146878.1	chr18	25504964	25505164	-	1	NA	NA	NA	248919	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.055000	0.592040	
mm_163854.1	chr14	19418351	19418551	+	1	NA	NA	NA	184136	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.328358	
mm_76783.1	chr8	99416330	99416530	-	1	NA	NA	NA	41	NM_001285913	12564	Mm.441131	NM_007667	ENSMUSG00000036510	Cdh8	AI851472|cad8	cadherin 8	protein-coding	0.040000	0.557214	
mm_40281.1	chr5	43103881	43104081	+	1	NA	NA	NA	-129482	NM_175937	231207	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.020000	0.542289	
mm_537.1	chr1	37998006	37998206	+	1	NA	NA	NA	96	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.135000	0.726368	
mm_154188.1	chr19	58822343	58822543	-	1	NA	NA	NA	-28029	NM_026208	67507	Mm.27027	NM_026208	ENSMUSG00000026931	1700019N19Rik	-	RIKEN cDNA 1700019N19 gene	protein-coding	0.010000	0.592040	
mm_16918.1	chr2	13573461	13573661	-	1	NA	NA	NA	-750	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.040000	0.497512	
mm_134747.1	chr16	23108011	23108211	-	1	NA	NA	NA	643	NR_110335	13682	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0.075000	0.601990	
mm_16859.1	chr2	11651398	11651598	-	1	NA	NA	NA	8706	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.005000	0.457711	
mm_128766.1	chr15	66286684	66286884	-	1	NA	NA	NA	-560	NM_152923	110862	Mm.255585	NM_152923	ENSMUSG00000056258	Kcnq3	-	potassium voltage-gated channel, subfamily Q, member 3	protein-coding	0.095000	0.746269	
mm_151219.1	chr19	53677234	53677434	+	1	NA	NA	NA	28	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.105000	0.721393	
mm_81839.1	chr9	118481176	118481376	+	1	NA	NA	NA	3087	NM_010136	13813	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	0.005000	0.447761	
mm_107161.1	chr12	24581414	24581614	+	1	NA	NA	NA	795	NM_145890	195733	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead-like 1 (Drosophila)	protein-coding	0.040000	0.557214	
mm_14345.1	chr2	129593269	129593469	+	1	NA	NA	NA	200	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.115000	0.721393	
mm_3039.1	chr1	134040157	134040357	+	1	NA	NA	NA	2742	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.025000	0.562189	
mm_131634.1	chr16	20188710	20188910	+	1	NA	NA	NA	-12576	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.005000	0.323383	
mm_48517.1	chr5	142895138	142895338	-	1	NA	NA	NA	0	NM_001033312	231863	Mm.89753	NM_001033312	ENSMUSG00000066640	Fbxl18	AI427077|B130019G13Rik|C330021B20Rik	F-box and leucine-rich repeat protein 18	protein-coding	0.095000	0.656716	
mm_63971.1	chr7	139944655	139944855	+	1	NA	NA	NA	899	NM_009482	22286	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	0.080000	0.641791	
mm_79746.1	chr9	62367777	62367977	+	1	NA	NA	NA	26534	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.010000	0.507463	
mm_5622.1	chr1	40130375	40130575	-	1	NA	NA	NA	-44624	NR_037980	100047133	Mm.447052	NR_037980	ENSMUSG00000097899	Gm16894	-	predicted gene, 16894	ncRNA	0.000000	0.358209	
mm_67489.1	chr7	80723852	80724052	-	1	NA	NA	NA	-35075	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.020000	0.492537	
mm_20849.1	chr2	148046888	148047088	-	1	NA	NA	NA	-19	NM_010446	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.070000	0.636816	
mm_105891.1	chr11	114934196	114934396	-	1	NA	NA	NA	90	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.010000	0.502488	
mm_41182.1	chr5	88317197	88317397	+	1	NA	NA	NA	-15	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.000000	0.343284	
mm_61137.1	chr7	56107341	56107541	+	1	NA	NA	NA	57286	NM_010418	15204	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	0.000000	0.432836	
mm_104919.1	chr11	99837971	99838171	-	1	NA	NA	NA	-5	NM_001195383	100502865	Mm.476649	NM_001195383	ENSMUSG00000078257	2300003K06Rik	-	RIKEN cDNA 2300003K06 gene	protein-coding	0.000000	0.437811	-35(GGGTATAAAAGA,-,0.00)
mm_30174.1	chr3	144204768	144204968	-	1	NA	NA	NA	387	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.090000	0.706468	
mm_161087.1	chr12	87102247	87102447	-	1	NA	NA	NA	192	NM_022414	64242	Mm.41395	NM_022414	ENSMUSG00000021032	Ngb	-	neuroglobin	protein-coding	0.080000	0.686567	
mm_17677.1	chr2	32260045	32260245	-	1	NA	NA	NA	-40	NM_011675	22245	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	0.085000	0.651741	
mm_148393.1	chr19	3767273	3767473	+	1	NA	NA	NA	-48	NM_001167889	225888	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0.060000	0.606965	
mm_19906.1	chr2	114175184	114175384	-	1	NA	NA	NA	55	NM_009702	11834	Mm.2545	NM_009702	ENSMUSG00000040383	Aqr	AW495846|mKIAA0560	aquarius	protein-coding	0.085000	0.631841	
mm_80081.1	chr9	70020157	70020357	+	1	NA	NA	NA	7709	NM_001282083	235459	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	0.005000	0.388060	-54(GTTTTTAAAGAA,+,0.00),-32(GAGTATAAAAGA,-,0.00)
mm_3616.1	chr1	152399787	152399987	+	1	NA	NA	NA	20	NM_177756	269132	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0.050000	0.631841	
mm_25933.1	chr3	131368895	131369095	+	1	NA	NA	NA	-24072	NM_028943	74442	Mm.273360	NM_028943	ENSMUSG00000050931	Sgms2	4933405A16Rik|5133401H06Rik|AI854299	sphingomyelin synthase 2	protein-coding	0.025000	0.432836	
mm_44762.1	chr5	31576523	31576723	-	1	NA	NA	NA	-5226	NR_102275	100740	Mm.23370	NR_102275		AI839979	-	expressed sequence AI839979	ncRNA	0.025000	0.542289	
mm_87331.1	chr10	42934814	42935014	+	1	NA	NA	NA	74402	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.015000	0.532338	
mm_60590.1	chr7	44482913	44483113	+	1	NA	NA	NA	-1504	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.497512	
mm_27738.1	chr3	69085345	69085545	-	1	NA	NA	NA	-40703	NM_025863	66949	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.000000	0.338308	
mm_68837.1	chr7	126327120	126327320	-	1	NA	NA	NA	40825	NR_106025	102466797		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.010000	0.552239	
mm_145066.1	chr18	40721412	40721612	+	1	NA	NA	NA	463151	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.000000	0.383085	
mm_115083.1	chr13	102693454	102693654	+	1	NA	NA	NA	-4	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.010000	0.398010	
mm_39257.1	chr5	3543733	3543933	+	1	NA	NA	NA	0	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.125000	0.731343	
mm_151103.1	chr19	47859366	47859566	+	1	NA	NA	NA	4493	NM_010362	14873	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0.025000	0.462687	
mm_130318.1	chr15	97369184	97369384	-	1	NA	NA	NA	-121997	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.025000	0.552239	
mm_8973.1	chr1	165329714	165329914	-	1	NA	NA	NA	27191	NM_001310430	240888	Mm.329929	NM_001081126	ENSMUSG00000040836	Gpr161	Gm208|Gm208Gpr|vl	G protein-coupled receptor 161	protein-coding	0.005000	0.298507	
mm_128594.1	chr15	58132229	58132429	-	1	NA	NA	NA	2753	NM_027435	70472	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0.015000	0.383085	30(CGCTCTTTAAGG,-,0.00),32(CTCTTTAAGGTC,+,0.00)
mm_64479.1	chr7	143064854	143065054	+	1	NA	NA	NA	-4414	NM_020285	56844	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.020000	0.542289	
mm_85095.1	chr9	92436432	92436632	-	1	NA	NA	NA	-20846	NM_178711	235527	Mm.55289	NM_178711	ENSMUSG00000032377	Plscr4	AV245873	phospholipid scramblase 4	protein-coding	0.005000	0.417910	
mm_31634.1	chr4	59352093	59352293	+	1	NA	NA	NA	86440	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.015000	0.507463	
mm_125727.1	chr15	73155475	73155675	+	1	NA	NA	NA	29372	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.020000	0.477612	
mm_59936.1	chr7	30424194	30424394	+	1	NA	NA	NA	990	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.005000	0.542289	
mm_57796.1	chr6	129284319	129284519	-	1	NA	NA	NA	-9050	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.010000	0.398010	-96(CTTCATATAAGG,-,0.00)
mm_100124.1	chr11	115911913	115912113	+	1	NA	NA	NA	-4	NM_001162998	68528	Mm.441893	NM_001162998	ENSMUSG00000075420	Smim6	1110017F19Rik	small integral membrane protein 6	protein-coding	0.015000	0.557214	
mm_110788.1	chr12	72070973	72071173	-	1	NA	NA	NA	-82	NM_181752	238252	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding	0.095000	0.671642	
mm_160025.1	chr6	130231637	130231837	-	1	NA	NA	NA	-50	NM_014194	16638	Mm.441781	NM_014194	ENSMUSG00000067599	Klra7	LGL-1|Ly-49G.1|Ly-49G.2|Ly-49G.3|Ly49G.4|Ly49g|Ly49g1|Ly49g2	killer cell lectin-like receptor, subfamily A, member 7	protein-coding	0.010000	0.383085	
mm_41223.1	chr5	88584122	88584322	+	1	NA	NA	NA	709	NM_027530	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.040000	0.562189	
mm_128443.1	chr15	50752228	50752428	-	1	NA	NA	NA	136721	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.363184	
mm_125237.1	chr15	34238043	34238243	+	1	NA	NA	NA	117	NM_033521	114128	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	0.115000	0.726368	
mm_163116.1	chr11	74649861	74650061	+	1	NA	NA	NA	466	NM_001081158	74148	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.125000	0.716418	
mm_66655.1	chr7	45713476	45713676	-	1	NA	NA	NA	1631	NM_020011	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.050000	0.616915	
mm_13914.1	chr2	120502421	120502621	+	1	NA	NA	NA	25612	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.025000	0.582090	
mm_14361.1	chr2	129616297	129616497	+	1	NA	NA	NA	23228	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.050000	0.517413	
mm_42269.1	chr5	114146205	114146405	+	1	NA	NA	NA	15149	NM_011677	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.025000	0.512438	
mm_105729.1	chr11	109144259	109144459	-	1	NA	NA	NA	10	NR_037978	268498	Mm.227970	NM_001085512	ENSMUSG00000078605	E030025P04Rik	Gm664	RIKEN cDNA E030025P04 gene	ncRNA	0.010000	0.542289	
mm_21508.1	chr2	163624818	163625018	-	1	NA	NA	NA	17706	NM_001305803	76080	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.000000	0.417910	39(CTTTTTATACTA,+,0.00)
mm_71171.1	chr8	40584845	40585045	+	1	NA	NA	NA	49847	NM_001040699	54384	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.005000	0.547264	
mm_157487.1	chrX	48249115	48249315	-	1	NA	NA	NA	-7719	NM_028276	72554	Mm.336045	NM_028276	ENSMUSG00000063785	Utp14a	2700066J21Rik|JsdX|NY-CO-16|SDCCAG16|T25628|mKIAA0266	UTP14A small subunit processome component	protein-coding	0.020000	0.422886	
mm_52056.1	chr6	97232571	97232771	+	1	NA	NA	NA	20109	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.030000	0.532338	-16(GTTTTTAAACAG,+,0.00)
mm_50056.1	chr6	41178331	41178531	+	1	NA	NA	NA	-123841	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.005000	0.517413	
mm_68189.1	chr7	104164731	104164931	-	1	NA	NA	NA	-15	NM_172905	244180	Mm.17149	NM_172905	ENSMUSG00000044265	Olfm5	E030002O03Rik	olfactomedin 5	protein-coding	0.000000	0.462687	
mm_103981.1	chr11	84826192	84826392	-	1	NA	NA	NA	2711	NM_177564	192970	Mm.192213	NM_177564	ENSMUSG00000034449	Dhrs11	-	dehydrogenase/reductase (SDR family) member 11	protein-coding	0.015000	0.537313	
mm_134787.1	chr16	24013123	24013323	-	1	NA	NA	NA	-24611	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.020000	0.477612	-31(AAATTTAAAAGG,-,0.00)
mm_145665.1	chr18	61130943	61131143	+	1	NA	NA	NA	13575	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.020000	0.507463	
mm_80024.1	chr9	67996547	67996747	+	1	NA	NA	NA	29067	NR_045745	434412	Mm.490707	NR_045745	ENSMUSG00000111841	Gm20745	-	predicted gene, 20745	ncRNA	0.005000	0.437811	
mm_26575.1	chr3	146852299	146852499	+	1	NA	NA	NA	32	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.070000	0.661692	
mm_650.1	chr1	40429057	40429257	+	1	NA	NA	NA	-413	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.005000	0.462687	
mm_168705.1	chr11	98067491	98067691	+	1	NA	NA	NA	-14129	NM_146028	217154	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0.040000	0.512438	-33(GTGTATATAAGG,-,0.00)
mm_143698.1	chr17	80480369	80480569	-	1	NA	NA	NA	-16	NM_009231	20662	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	son of sevenless homolog 1 (Drosophila)	protein-coding	0.130000	0.726368	
mm_76421.1	chr8	84976225	84976425	-	1	NA	NA	NA	2423	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.095000	0.701493	
mm_142770.1	chr17	49550009	49550209	-	1	NA	NA	NA	14228	NM_001008231	76441	Mm.211275	NM_001008231	ENSMUSG00000040260	Daam2	2310016D11Rik|AI843643|AW557870	dishevelled associated activator of morphogenesis 2	protein-coding	0.020000	0.497512	
mm_124279.1	chr14	103046748	103046948	-	1	NA	NA	NA	-164	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.005000	0.432836	
mm_149691.1	chr19	21271770	21271970	+	1	NA	NA	NA	-408	NM_009551	22682	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.110000	0.731343	
mm_129266.1	chr15	76904881	76905081	-	1	NA	NA	NA	910	NM_012053	26961	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0.050000	0.616915	
mm_122135.1	chr14	31162401	31162601	-	1	NA	NA	NA	6140	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.030000	0.587065	
mm_46557.1	chr5	106696672	106696872	-	1	NA	NA	NA	58	NM_026856	52397	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.115000	0.731343	
mm_99448.1	chr11	102433876	102434076	+	1	NA	NA	NA	3654	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.010000	0.517413	
mm_167292.1	chr8	45748906	45749106	+	1	NA	NA	NA	70291	NR_045739	319940	Mm.441720	NR_045739	ENSMUSG00000085440	Sorbs2os	D330022K07Rik	sorbin and SH3 domain containing 2, opposite strand	ncRNA	0.005000	0.353234	
mm_55097.1	chr6	49424869	49425069	-	1	NA	NA	NA	29365	NM_029916	77485	Mm.128054	NM_029916	ENSMUSG00000023403	Stk31	C330007K24Rik	serine threonine kinase 31	protein-coding	0.015000	0.383085	
mm_154333.1	chrM	3283	3483	+	1	NA	NA	NA	NA	NA									0.040000	0.427861	
mm_82851.1	chr9	31211715	31211915	-	1	NA	NA	NA	0	NM_001102455	11804	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2	amyloid beta (A4) precursor-like protein 2	protein-coding	0.105000	0.646766	
mm_134790.1	chr16	24089939	24090139	-	1	NA	NA	NA	-101427	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.000000	0.477612	
mm_153128.1	chr19	34165922	34166122	-	1	NA	NA	NA	19	NM_024204	52024	Mm.183030	NM_024204	ENSMUSG00000024774	Ankrd22	5430429D21Rik|D19Ertd675e	ankyrin repeat domain 22	protein-coding	0.010000	0.507463	
mm_146865.1	chr18	24603397	24603597	-	1	NA	NA	NA	320	NM_139143	106957	Mm.21688	NM_139143	ENSMUSG00000024270	Slc39a6	Ermelin	solute carrier family 39 (metal ion transporter), member 6	protein-coding	0.130000	0.691542	
mm_70189.1	chr7	143780327	143780527	-	1	NA	NA	NA	4073	NM_175534	244238	Mm.183561	NM_175534	ENSMUSG00000048965	Mrgpre	C130069N09Rik|Ebrt3|Mgrf|MrgE	MAS-related GPR, member E	protein-coding	0.010000	0.492537	
mm_143038.1	chr17	56717595	56717795	-	1	NA	NA	NA	4	NM_001166474	106639	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0.095000	0.562189	
mm_141318.1	chr17	28365023	28365223	-	1	NA	NA	NA	20	NM_021478	22157	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.035000	0.621891	
mm_30005.1	chr3	135608307	135608507	-	1	NA	NA	NA	83140	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.035000	0.507463	8(CCTTTAATGCAT,+,0.00)
mm_63554.1	chr7	128076094	128076294	+	1	NA	NA	NA	13554	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.005000	0.383085	
mm_51848.1	chr6	90363812	90364012	+	1	NA	NA	NA	-5582	NM_173002	80292	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	0.000000	0.512438	
mm_94955.1	chr11	30152991	30153191	+	1	NA	NA	NA	45166	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.020000	0.437811	
mm_121343.1	chr14	115942497	115942697	+	1	NA	NA	NA	-533045	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0.000000	0.343284	
mm_124274.1	chr14	103029089	103029289	-	1	NA	NA	NA	4614	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.010000	0.398010	
mm_134952.1	chr16	31303378	31303578	-	1	NA	NA	NA	11330	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.035000	0.502488	
mm_15425.1	chr2	157084973	157085173	+	1	NA	NA	NA	-1982	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.010000	0.582090	
mm_133652.1	chr16	91804557	91804757	+	1	NA	NA	NA	75286	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.020000	0.467662	
mm_73041.1	chr8	94266994	94267194	+	1	NA	NA	NA	52493	NM_172410	71805	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0.020000	0.532338	
mm_125824.1	chr15	74957095	74957295	+	1	NA	NA	NA	2089	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.015000	0.462687	
mm_155083.1	chrX	48056460	48056660	+	1	NA	NA	NA	-21707	NM_013912	30878	Mm.29262	NM_013912	ENSMUSG00000037010	Apln	6030430G11Rik|Apel	apelin	protein-coding	0.015000	0.407960	
mm_78041.1	chr9	14380971	14381171	+	1	NA	NA	NA	171	NM_028013	71946	Mm.41423	NM_028013	ENSMUSG00000037419	Endod1	2210414F18Rik|2310067E08Rik|C85344	endonuclease domain containing 1	protein-coding	0.105000	0.741294	
mm_103530.1	chr11	77200852	77201052	-	1	NA	NA	NA	-11984	NM_176965	319634	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	0.005000	0.422886	
mm_102393.1	chr11	58999160	58999360	-	1	NA	NA	NA	21167	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.025000	0.651741	
mm_25338.1	chr3	106721603	106721803	+	1	NA	NA	NA	21	NM_001286685	321000	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	0.065000	0.587065	
mm_48886.1	chr5	151233735	151233935	-	1	NA	NA	NA	-43642	NM_146258	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.090000	0.731343	
mm_100774.1	chr11	4789722	4789922	-	1	NA	NA	NA	-43044	NM_138948	192650	Mm.207056	NM_138948	ENSMUSG00000009075	Cabp7	-	calcium binding protein 7	protein-coding	0.025000	0.562189	
mm_26719.1	chr3	158960276	158960476	+	1	NA	NA	NA	-115988	NR_040750	624759	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA	0.000000	0.422886	
mm_67185.1	chr7	73939939	73940139	-	1	NA	NA	NA	73643	NM_009181	20450	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0.005000	0.462687	27(AGGCTTATAAGC,-,0.00),29(GCTTATAAGCTG,+,0.00)
mm_20545.1	chr2	131068436	131068636	-	1	NA	NA	NA	-4722	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.005000	0.507463	
mm_48646.1	chr5	145854866	145855066	-	1	NA	NA	NA	24888	NM_007818	13112	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	0.005000	0.363184	
mm_118016.1	chr13	100775769	100775969	-	1	NA	NA	NA	30	NM_021886	26886	Mm.273502	NM_021886	ENSMUSG00000045273	Cenph	1700021I11Rik|2410018A12Rik|2610042E16Rik|2810046K12Rik|AU044255|CENP-H|ENP	centromere protein H	protein-coding	0.070000	0.611940	
mm_91443.1	chr10	33933083	33933283	-	1	NA	NA	NA	18029	NM_028287	72580	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	0.010000	0.452736	
mm_9228.1	chr1	171240952	171241152	-	1	NA	NA	NA	6070	NM_153064	226646	Mm.21669	NM_153064	ENSMUSG00000013593	Ndufs2	CI-49kD	NADH dehydrogenase (ubiquinone) Fe-S protein 2	protein-coding	0.035000	0.542289	
mm_6083.1	chr1	63088388	63088588	-	1	NA	NA	NA	25779	NM_001081436	227195	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584|OTTMUSG00000002594	INO80 complex subunit D	protein-coding	0.005000	0.383085	
mm_140042.1	chr17	74489434	74489634	+	1	NA	NA	NA	41	NM_026417	67864	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	0.110000	0.666667	
mm_42627.1	chr5	118318870	118319070	+	1	NA	NA	NA	73743	NM_001081236	76792	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0.050000	0.636816	
mm_157410.1	chrX	38440187	38440387	-	1	NA	NA	NA	16173	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.020000	0.378109	
mm_131442.1	chr16	16213030	16213230	+	1	NA	NA	NA	-215	NM_026163	67451	Mm.2252	NM_026163	ENSMUSG00000041957	Pkp2	1200008D14Rik|1200012P04Rik|AA516617|Pkp2l	plakophilin 2	protein-coding	0.055000	0.567164	
mm_40793.1	chr5	67607781	67607981	+	1	NA	NA	NA	-2	NM_001033415	330096	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.080000	0.666667	-33(GCCTTTTTAAGG,-,0.00),-31(CTTTTTAAGGGA,+,0.00)
mm_61621.1	chr7	80186770	80186970	+	1	NA	NA	NA	29	NM_013659	20352	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.115000	0.691542	
mm_20359.1	chr2	128257624	128257824	-	1	NA	NA	NA	130149	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.010000	0.447761	
mm_27590.1	chr3	59130535	59130735	-	1	NA	NA	NA	127	NM_001008497	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.020000	0.502488	-98(GGGGTTAAAAGG,-,0.00)
mm_53020.1	chr6	124068046	124068246	+	1	NA	NA	NA	43388	NM_019917	56552	Mm.23795	NM_019917	ENSMUSG00000096630	Vmn2r26	V2R1|V2r1b	vomeronasal 2, receptor 26	protein-coding	0.000000	0.437811	28(AGGTTTTAAAGG,-,0.00),30(GTTTTAAAGGAG,+,0.00)
mm_87506.1	chr10	52388870	52389070	+	1	NA	NA	NA	-2638	NM_025684	66650	Mm.90950	NM_025684	ENSMUSG00000038624	Nepn	5730521E12Rik|Npn|periolin	nephrocan	protein-coding	0.005000	0.462687	
mm_164462.1	chr16	58499779	58499979	-	1	NA	NA	NA	23433	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.005000	0.462687	
mm_119040.1	chr14	30568093	30568293	+	1	NA	NA	NA	-3956	NR_037237	100526475		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0.020000	0.547264	
mm_32299.1	chr4	103119363	103119563	+	1	NA	NA	NA	73	NM_001039081	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.165000	0.786070	
mm_54720.1	chr6	40435054	40435254	-	1	NA	NA	NA	979	NM_175528	243780	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0.050000	0.562189	
mm_1452.1	chr1	67230548	67230748	+	1	NA	NA	NA	107621	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.353234	
mm_66710.1	chr7	45973281	45973481	-	1	NA	NA	NA	44983	NM_001033243	211535	Mm.227539	NM_001033243	ENSMUSG00000040189	Ccdc114	-	coiled-coil domain containing 114	protein-coding	0.015000	0.527363	
mm_123911.1	chr14	73325828	73326028	-	1	NA	NA	NA	-137	NM_009029	19645	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb	retinoblastoma 1	protein-coding	0.200000	0.845771	
mm_149671.1	chr19	18855570	18855770	+	1	NA	NA	NA	105687	NM_153417	225997	Mm.215171	NM_153417	ENSMUSG00000024727	Trpm6	CHAK2|TRPM6/CHAK2	transient receptor potential cation channel, subfamily M, member 6	protein-coding	0.010000	0.343284	
mm_69271.1	chr7	127929929	127930129	-	1	NA	NA	NA	84	NM_133351	76560	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0.015000	0.542289	
mm_118548.1	chr14	17659671	17659871	+	1	NA	NA	NA	-1189	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.040000	0.492537	
mm_55004.1	chr6	48836169	48836369	-	1	NA	NA	NA	4719	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.015000	0.547264	
mm_3811.1	chr1	158551488	158551688	+	1	NA	NA	NA	45963	NR_030441	735253		NR_030441	ENSMUSG00000070103	Mir488	Mirn488|mir-488|mmu-mir-488	microRNA 488	ncRNA	0.010000	0.363184	
mm_116581.1	chr13	47106006	47106206	-	1	NA	NA	NA	115	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.145000	0.706468	
mm_142369.1	chr17	44618477	44618677	-	1	NA	NA	NA	117599	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.010000	0.388060	
mm_126836.1	chr15	89020234	89020434	+	1	NA	NA	NA	37340	NM_031260	83456	Mm.358791	NM_031260	ENSMUSG00000015365	Mov10l1	CHAMP|Csm	Moloney leukemia virus 10-like 1	protein-coding	0.030000	0.487562	
mm_142361.1	chr17	43744486	43744686	-	1	NA	NA	NA	-57265	NM_207649	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.020000	0.502488	
mm_40951.1	chr5	76855391	76855591	+	1	NA	NA	NA	14892	NM_001163793	320827	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.000000	0.363184	
mm_144196.1	chr18	7905350	7905550	+	1	NA	NA	NA	36253	NM_153085	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.010000	0.368159	-89(GCTTAAATAGCA,+,0.00)
mm_145142.1	chr18	45559495	45559695	+	1	NA	NA	NA	-559	NM_080465	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.080000	0.671642	
mm_106262.1	chr11	117967965	117968165	-	1	NA	NA	NA	1301	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.110000	0.641791	
mm_74294.1	chr8	125995244	125995444	+	1	NA	NA	NA	242	NM_008430	16525	Mm.10800	NM_008430	ENSMUSG00000033998	Kcnk1	AI788889|TWIK-1	potassium channel, subfamily K, member 1	protein-coding	0.095000	0.671642	
mm_47125.1	chr5	119807558	119807758	-	1	NA	NA	NA	-27005	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.040000	0.497512	
mm_44949.1	chr5	36582290	36582490	-	1	NA	NA	NA	7	NM_133910	100855	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.085000	0.686567	
mm_156031.1	chrX	107255977	107256177	+	1	NA	NA	NA	49	NM_001033251	213439	Mm.383562	NM_001033251	ENSMUSG00000073008	Gpr174	Gm376|Lypsr3	G protein-coupled receptor 174	protein-coding	0.005000	0.417910	
mm_167518.1	chr9	15279825	15280025	-	1	NA	NA	NA	-58	NM_144933	234959	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0.090000	0.631841	
mm_130517.1	chr15	98871081	98871281	-	1	NA	NA	NA	24	NM_001033276	381022	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.045000	0.542289	-8(TTTTTTAAACCC,+,0.00)
mm_88131.1	chr10	69398658	69398858	+	1	NA	NA	NA	-45846	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.080000	0.711443	
mm_142797.1	chr17	50190439	50190639	-	1	NA	NA	NA	-42	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.125000	0.716418	
mm_59418.1	chr7	27121769	27121969	+	1	NA	NA	NA	1914	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.030000	0.577114	
mm_149724.1	chr19	21778547	21778747	+	1	NA	NA	NA	307	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.095000	0.686567	
mm_66774.1	chr7	46833291	46833491	-	1	NA	NA	NA	-12413	NM_010699	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.020000	0.572139	
mm_51278.1	chr6	72142082	72142282	+	1	NA	NA	NA	-18985	NR_045165	71265	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.025000	0.507463	-77(AGGTTTTAAAGC,-,0.00)
mm_47225.1	chr5	121373323	121373523	-	1	NA	NA	NA	12192	NM_001163470	231712	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.025000	0.542289	
mm_86008.1	chr9	112233218	112233418	-	1	NA	NA	NA	-817	NM_001177616	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.000000	0.407960	
mm_103272.1	chr11	72037419	72037619	-	1	NA	NA	NA	-10	NM_053245	114230	Mm.95707	NM_053245	ENSMUSG00000040554	Aipl1	A930007I01Rik	aryl hydrocarbon receptor-interacting protein-like 1	protein-coding	0.010000	0.552239	
mm_29480.1	chr3	115712508	115712708	-	1	NA	NA	NA	2447	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.025000	0.537313	
mm_86046.1	chr9	114497244	114497444	-	1	NA	NA	NA	-800	NM_009916	12773	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	0.020000	0.507463	
mm_4311.1	chr1	171845582	171845782	+	1	NA	NA	NA	5985	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.412935	
mm_43406.1	chr5	135887814	135888014	+	1	NA	NA	NA	-5	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.055000	0.636816	6(CCATTAATAGAG,+,0.00)
mm_90346.1	chr10	127150611	127150811	+	1	NA	NA	NA	-14445	NR_045166	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.015000	0.467662	-33(GTTTTTAAATCC,+,0.00)
mm_154195.1	chr19	58943465	58943665	-	1	NA	NA	NA	107	NM_001327998	73442	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0.080000	0.646766	
mm_144542.1	chr18	27598484	27598684	+	1	NA	NA	NA	-961580	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.030000	0.462687	
mm_25777.1	chr3	126596916	126597116	+	1	NA	NA	NA	65	NM_023813	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.120000	0.761194	
mm_86607.1	chr10	13832697	13832897	+	1	NA	NA	NA	36160	NM_025446	66253	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	0.015000	0.427861	
mm_123677.1	chr14	69484617	69484817	-	1	NA	NA	NA	27832	NM_173420	239167	Mm.259889	NM_173420	ENSMUSG00000047977	Synb	D930020E02Rik|syncytin-B	syncytin b	protein-coding	0.020000	0.547264	
mm_47296.1	chr5	122247989	122248189	-	1	NA	NA	NA	16371	NR_104441	654470	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.015000	0.542289	
mm_50103.1	chr6	41533124	41533324	+	1	NA	NA	NA	11448	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.492537	
mm_27.1	chr1	6214603	6214803	+	1	NA	NA	NA	41	NM_009826	12421	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	0.120000	0.726368	
mm_102193.1	chr11	54353153	54353353	-	1	NA	NA	NA	-17399	NM_029105	74847	Mm.486538	NM_029105	ENSMUSG00000020332	Meikin	4930404A10Rik	meiotic kinetochore factor	protein-coding	0.040000	0.562189	
mm_121039.1	chr14	80006172	80006372	+	1	NA	NA	NA	5970	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding	0.025000	0.457711	
mm_83714.1	chr9	50752214	50752414	-	1	NA	NA	NA	40	NM_001164708	69253	Mm.1980	NM_024441	ENSMUSG00000038086	Hspb2	27kDa|2810021G24Rik|HSP27|MKBP	heat shock protein 2	protein-coding	0.045000	0.621891	
mm_117274.1	chr13	65066424	65066624	-	1	NA	NA	NA	33466	NM_001083890	238683	Mm.295543	NM_001083890	ENSMUSG00000074849	Spata31d1c	4932441B19Rik|Fam75d1c	spermatogenesis associated 31 subfamily D, member 1C	protein-coding	0.015000	0.477612	
mm_92211.1	chr10	68218750	68218950	-	1	NA	NA	NA	59876	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.010000	0.363184	
mm_1493.1	chr1	71887961	71888161	+	1	NA	NA	NA	-51	NR_027658	667931	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	0.005000	0.592040	
mm_131005.1	chr15	103562729	103562929	-	1	NA	NA	NA	2252	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.020000	0.482587	
mm_81518.1	chr9	110051903	110052103	+	1	NA	NA	NA	-18	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.030000	0.557214	
mm_93906.1	chr10	126978344	126978544	-	1	NA	NA	NA	-273	NM_001113470	52468	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0.060000	0.597015	-32(ACTTAAAAAGGC,+,0.00)
mm_143551.1	chr17	74047759	74047959	-	1	NA	NA	NA	57	NM_053188	94224	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.060000	0.671642	-33(CTCCATAAAGGG,-,0.00),-31(CCATAAAGGGGC,+,0.00)
mm_59411.1	chr7	27121396	27121596	+	1	NA	NA	NA	1541	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.005000	0.542289	
mm_131602.1	chr16	19063501	19063701	+	1	NA	NA	NA	186851	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.000000	0.437811	
mm_165620.1	chr3	61409834	61410034	+	1	NA	NA	NA	45427	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.025000	0.497512	
mm_148359.1	chr18	85666708	85666908	-	1	NA	NA	NA	-715284	NM_025969	67105	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	tranlocase of inner mitochondrial membrane 21	protein-coding	0.000000	0.388060	
mm_166363.1	chr5	123832191	123832391	-	1	NA	NA	NA	33225	NM_030701	80885	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0.045000	0.462687	
mm_110139.1	chr12	26447853	26448053	-	1	NA	NA	NA	8499	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.437811	
mm_87580.1	chr10	56504408	56504608	+	1	NA	NA	NA	127208	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.040000	0.582090	
mm_30417.1	chr3	152265770	152265970	-	1	NA	NA	NA	450	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.110000	0.731343	
mm_47693.1	chr5	129682222	129682422	-	1	NA	NA	NA	-12234	NM_172462	22648	Mm.135067	NM_172462	ENSMUSG00000051034	Zfp11	6720465D24|Krox-6|Zfp-11	zinc finger protein 11	protein-coding	0.000000	0.363184	
mm_163303.1	chr11	120941891	120942091	-	1	NA	NA	NA	-6493	NM_030696	80879	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0.000000	0.407960	
mm_122973.1	chr14	54975285	54975485	-	1	NA	NA	NA	391	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.020000	0.592040	
mm_138551.1	chr17	35264682	35264882	+	1	NA	NA	NA	1659	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.010000	0.422886	
mm_60483.1	chr7	44478329	44478529	+	1	NA	NA	NA	-6088	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.472637	
mm_122846.1	chr14	54733156	54733356	-	1	NA	NA	NA	-21082	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.025000	0.547264	
mm_165615.1	chr3	57312345	57312545	-	1	NA	NA	NA	-10526	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	0.000000	0.358209	
mm_143339.1	chr17	66504113	66504313	-	1	NA	NA	NA	15457	NM_024448	19328	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0.005000	0.412935	-7(TTTTTTAAAAGC,-,0.00)
mm_165132.1	chr2	9882557	9882757	+	1	NA	NA	NA	1411	NR_024257	381347	Mm.441450	NR_024257		4930412O13Rik	ENSMUSG00000075535|Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.080000	0.636816	
mm_156073.1	chrX	109161544	109161744	+	1	NA	NA	NA	-35112	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.000000	0.283582	
mm_8313.1	chr1	144248958	144249158	-	1	NA	NA	NA	46	NM_015811	50778	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.030000	0.477612	-35(CGCTATATAAAG,-,0.00)
mm_61884.1	chr7	89632794	89632994	+	1	NA	NA	NA	76	NM_181407	109264	Mm.334011	NM_181407	ENSMUSG00000030621	Me3	1700020C08Rik|B230207H15Rik	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding	0.080000	0.706468	
mm_102686.1	chr11	65356290	65356490	-	1	NA	NA	NA	-68557	NR_040280	327946	Mm.383301	NR_040280	ENSMUSG00000085162	Gm12295	A730013G04|OTTMUSG00000005904	predicted gene 12295	ncRNA	0.000000	0.373134	
mm_134988.1	chr16	32143965	32144165	-	1	NA	NA	NA	21411	NM_146069	224109	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.045000	0.577114	
mm_14846.1	chr2	148395291	148395491	+	1	NA	NA	NA	14	NM_009219	20608	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0.130000	0.741294	
mm_135367.1	chr16	44061374	44061574	-	1	NA	NA	NA	-33529	NM_001172107	207798	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.040000	0.537313	
mm_54183.1	chr6	23839403	23839603	-	1	NA	NA	NA	-82	NM_001252105	320405	Mm.259632	NM_153163	ENSMUSG00000017978	Cadps2	A230044C21Rik|Caps-2|Caps2|Cpd2	Ca2+-dependent activator protein for secretion 2	protein-coding	0.200000	0.815920	
mm_104382.1	chr11	94474000	94474200	-	1	NA	NA	NA	98	NM_001177888	12291	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0.075000	0.736318	
mm_19053.1	chr2	77278772	77278972	-	1	NA	NA	NA	1720	NM_175465	228071	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.010000	0.353234	
mm_57273.1	chr6	123289769	123289969	-	1	NA	NA	NA	2	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.015000	0.422886	
mm_6558.1	chr1	75141438	75141638	-	1	NA	NA	NA	830	NM_026977	69171	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0.085000	0.671642	
mm_34509.1	chr4	148804372	148804572	+	1	NA	NA	NA	80	NM_027195	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.105000	0.646766	
mm_128029.1	chr15	25363431	25363631	-	1	NA	NA	NA	50233	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.025000	0.373134	
mm_167952.1	chrX	140598825	140599025	+	1	NA	NA	NA	1597	NM_001077364	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.145000	0.776119	
mm_100703.1	chr11	3647985	3648185	-	1	NA	NA	NA	-549	NR_002322	544752	Mm.390314	NR_002321	ENSMUSG00000056579	Tug1	AI316828	taurine upregulated gene 1	ncRNA	0.015000	0.477612	
mm_147911.1	chr18	65427708	65427908	-	1	NA	NA	NA	-3189	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.015000	0.482587	
mm_38285.1	chr4	136890209	136890409	-	1	NA	NA	NA	2605	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.040000	0.592040	
mm_108846.1	chr12	98268584	98268784	+	1	NA	NA	NA	49	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.010000	0.412935	
mm_111680.1	chr12	103382472	103382672	-	1	NA	NA	NA	5678	NR_033587	68149	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	0.005000	0.547264	
mm_101555.1	chr11	33843582	33843782	-	1	NA	NA	NA	-97	NM_001290690	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.110000	0.751244	
mm_39724.1	chr5	28316868	28317068	+	1	NA	NA	NA	-221	NM_028234	381626	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	0.120000	0.651741	
mm_98333.1	chr11	90675873	90676073	+	1	NA	NA	NA	11628	NM_028011	71943	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	0.005000	0.472637	
mm_151441.1	chr19	57452813	57453013	+	1	NA	NA	NA	7	NM_028115	72133	Mm.258404	NM_028115	ENSMUSG00000025086	Trub1	2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870	TruB pseudouridine (psi) synthase family member 1	protein-coding	0.025000	0.547264	
mm_120216.1	chr14	62760374	62760574	+	1	NA	NA	NA	-27	NR_045503	71000	Mm.399410	NR_045503	ENSMUSG00000097775	4931440J10Rik	-	RIKEN cDNA 4931440J10 gene	ncRNA	0.110000	0.761194	
mm_8940.1	chr1	164437790	164437990	-	1	NA	NA	NA	20465	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.020000	0.393035	
mm_31417.1	chr4	48051161	48051361	+	1	NA	NA	NA	15	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.030000	0.532338	
mm_91879.1	chr10	59613046	59613246	-	1	NA	NA	NA	3546	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.005000	0.353234	
mm_47353.1	chr5	122744839	122745039	-	1	NA	NA	NA	34471	NM_001199676	207565	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.005000	0.457711	
mm_173198.1	chrX	65366994	65367194	-	1	NA	NA	NA	319450	NM_027302	70062	Mm.45791	NM_027302	ENSMUSG00000031181	Ctag2	1700030B21Rik	cancer/testis antigen 2	protein-coding	0.010000	0.383085	
mm_67572.1	chr7	81934541	81934741	-	1	NA	NA	NA	-182	NM_013886	29877	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfrp3	2700022B06Rik|HRP-3	hepatoma-derived growth factor, related protein 3	protein-coding	0.115000	0.721393	
mm_20932.1	chr2	150856018	150856218	-	1	NA	NA	NA	48613	NM_024465	76192	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.015000	0.477612	
mm_53228.1	chr6	127152472	127152672	+	1	NA	NA	NA	-1524	NM_009829	12444	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.040000	0.552239	-83(CCCTTTAAACGA,+,0.00),-34(CACTTTAAAAGG,-,0.00),-33(ACTTTAAAAGGG,+,0.00)
mm_36951.1	chr4	109107901	109108101	-	1	NA	NA	NA	10035	NM_173350	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.005000	0.402985	
mm_13943.1	chr2	121289498	121289698	+	1	NA	NA	NA	-4	NM_032393	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.120000	0.696517	-31(GCCTTTAAGAAC,-,0.00),-30(CCTTTAAGAACC,+,0.00)
mm_132123.1	chr16	31749058	31749258	+	1	NA	NA	NA	-5192	NM_001252436	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.000000	0.398010	
mm_68518.1	chr7	111736047	111736247	-	1	NA	NA	NA	43830	NM_173739	233733	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	0.005000	0.527363	
mm_143821.1	chr17	83846775	83846975	-	1	NA	NA	NA	-85	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.035000	0.582090	
mm_149057.1	chr19	8839293	8839493	+	1	NA	NA	NA	65	NM_008144	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.005000	0.567164	
mm_107446.1	chr12	36607366	36607566	+	1	NA	NA	NA	191850	NR_037309	100499526		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA	0.000000	0.258706	
mm_189.1	chr1	15803120	15803320	+	1	NA	NA	NA	-2426	NM_009352	21749	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	0.005000	0.502488	
mm_124753.1	chr15	6642481	6642681	+	1	NA	NA	NA	62734	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.015000	0.338308	
mm_58418.1	chr7	3292883	3293083	+	1	NA	NA	NA	-45	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.045000	0.636816	
mm_5482.1	chr1	36799305	36799505	-	1	NA	NA	NA	20421	NM_001289612	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.010000	0.437811	
mm_13668.1	chr2	115581558	115581758	+	1	NA	NA	NA	-58	NM_207264	399568	Mm.134929	NM_207264	ENSMUSG00000040282	BC052040	-	cDNA sequence BC052040	protein-coding	0.085000	0.631841	
mm_12721.1	chr2	78293136	78293336	+	1	NA	NA	NA	55689	NM_177843	329436	Mm.235448	NM_177843		Gm14461	A830093M07|OTTMUSG00000016703	predicted gene 14461	protein-coding	0.000000	0.437811	
mm_133359.1	chr16	84702073	84702273	+	1	NA	NA	NA	-10850	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.015000	0.427861	
mm_39812.1	chr5	30666827	30667027	+	1	NA	NA	NA	41	NR_126074	12615	Mm.290563	NM_007681	ENSMUSG00000029177	Cenpa	Cenp-A	centromere protein A	protein-coding	0.075000	0.611940	-61(GGATTTAAAAGA,-,0.00)
mm_128450.1	chr15	50772452	50772652	-	1	NA	NA	NA	116497	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.005000	0.373134	
mm_16901.1	chr2	13413491	13413691	-	1	NA	NA	NA	78285	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.005000	0.447761	-74(GTCCTTTAGAGG,-,0.00)
mm_78479.1	chr9	32695663	32695863	+	1	NA	NA	NA	-279	NM_011808	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.075000	0.606965	
mm_165870.1	chr4	39740659	39740859	+	1	NA	NA	NA	290466	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0.000000	0.472637	
mm_69183.1	chr7	127233080	127233280	-	1	NA	NA	NA	-50	NR_030674	100043580	Mm.482209	NR_030674	ENSMUSG00000000486	Gm4532	-	predicted gene 4532	ncRNA	0.165000	0.786070	
mm_4926.1	chr1	191036719	191036919	+	1	NA	NA	NA	-3	NM_029336	75558	Mm.383398	NM_029336	ENSMUSG00000057072	Spata45	1700022P22Rik	spermatogenesis associated 45	protein-coding	0.000000	0.477612	45(TGTTATTAAAGG,-,0.00)
mm_168772.1	chr12	17459275	17459475	-	1	NA	NA	NA	-85498	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.010000	0.507463	-16(CCTTTTATAAGT,+,0.00)
mm_24785.1	chr3	95541608	95541808	+	1	NA	NA	NA	14922	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.000000	0.497512	
mm_5413.1	chr1	33814496	33814696	-	1	NA	NA	NA	-1	NM_001290699	98403	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	0.125000	0.686567	
mm_5865.1	chr1	53775561	53775761	-	1	NA	NA	NA	9554	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.005000	0.398010	
mm_123320.1	chr14	62700578	62700778	-	1	NA	NA	NA	37011	NM_001199945	319433	Mm.483827	NM_001199945	ENSMUSG00000091155	Serpine3	E130113E03Rik	serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3	protein-coding	0.025000	0.522388	
mm_44688.1	chr5	30154871	30155071	-	1	NA	NA	NA	9	NM_178878	97212	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	0.050000	0.572139	
mm_111801.1	chr12	105006774	105006974	-	1	NA	NA	NA	2935	NM_172500	212073	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.010000	0.492537	
mm_145784.1	chr18	65083517	65083717	+	1	NA	NA	NA	60090	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.055000	0.582090	
mm_116828.1	chr13	54611260	54611460	-	1	NA	NA	NA	13	NM_028870	74325	Mm.290026	NM_028870	ENSMUSG00000047547	Cltb	2310046E19Rik|lcb	clathrin, light polypeptide (Lcb)	protein-coding	0.150000	0.786070	
mm_162528.1	chr1	163887727	163887927	+	1	NA	NA	NA	-41273	NM_001286002	240880	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0.010000	0.358209	
mm_14213.1	chr2	127333405	127333605	+	1	NA	NA	NA	-2654	NM_010090	13537	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.025000	0.621891	
mm_114236.1	chr13	56609461	56609661	+	1	NA	NA	NA	-42	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.100000	0.706468	
mm_12450.1	chr2	71211704	71211904	+	1	NA	NA	NA	98	NM_001198876	13427	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0.060000	0.572139	
mm_41288.1	chr5	90463294	90463494	+	1	NA	NA	NA	2524	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.005000	0.467662	
mm_77000.1	chr8	107388584	107388784	-	1	NA	NA	NA	14521	NM_008706	18104	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	0.010000	0.393035	
mm_73983.1	chr8	120549191	120549391	+	1	NA	NA	NA	10595	NR_106159	102466849		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0.000000	0.532338	
mm_14693.1	chr2	141179903	141180103	+	1	NA	NA	NA	-508527	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.000000	0.323383	
mm_22414.1	chr2	181483519	181483719	-	1	NA	NA	NA	-9587	NM_183181	241850	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	0.015000	0.567164	
mm_44964.1	chr5	36713268	36713468	-	1	NA	NA	NA	-17347	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.040000	0.626866	
mm_76454.1	chr8	85220480	85220680	-	1	NA	NA	NA	-9917	NM_146859	258858	Mm.354727	NM_146859	ENSMUSG00000051952	Olfr371	MOR141-3	olfactory receptor 371	protein-coding	0.010000	0.532338	
mm_5877.1	chr1	53824882	53825082	-	1	NA	NA	NA	-24442	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.015000	0.417910	
mm_8809.1	chr1	161876701	161876901	-	1	NA	NA	NA	-140	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.125000	0.706468	
mm_118585.1	chr14	20348102	20348302	+	1	NA	NA	NA	40	NM_001177633	105428	Mm.206990	NM_172379	ENSMUSG00000039599	Fam149b	AA536717|AI428773|Fam149b1|mKIAA0974	family with sequence similarity 149, member B	protein-coding	0.095000	0.676617	
mm_137795.1	chr17	29679159	29679359	+	1	NA	NA	NA	18664	NM_028791	74157	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	0.000000	0.522388	
mm_150887.1	chr19	45151495	45151695	+	1	NA	NA	NA	880	NM_021901	21908	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	0.070000	0.601990	
mm_32019.1	chr4	95052765	95052965	+	1	NA	NA	NA	-643	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.060000	0.572139	
mm_66126.1	chr7	31054269	31054469	-	1	NA	NA	NA	484	NM_052991	56188	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	0.015000	0.567164	
mm_95621.1	chr11	53567295	53567495	+	1	NA	NA	NA	26	NM_001290806	16568	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	0.080000	0.651741	
mm_92239.1	chr10	69352808	69353008	-	1	NA	NA	NA	4	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.090000	0.621891	
mm_114780.1	chr13	88821860	88822060	+	1	NA	NA	NA	488	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.055000	0.616915	
mm_24513.1	chr3	92679146	92679346	+	1	NA	NA	NA	-1	NM_028622	73719	Mm.292458	NM_028622	ENSMUSG00000042092	Lce1c	1110014K05Rik	late cornified envelope 1C	protein-coding	0.000000	0.522388	
mm_104588.1	chr11	97026067	97026267	-	1	NA	NA	NA	251	NR_133649	100127433	Mm.156282	NR_133649	ENSMUSG00000087067	Gm11532	OTTMUSG00000001860|Sp6os	predicted gene 11532	ncRNA	0.040000	0.547264	
mm_112938.1	chr13	20986129	20986329	+	1	NA	NA	NA	87070	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.000000	0.462687	76(GCTTTTCAGGGC,+,0.00)
mm_64436.1	chr7	142652993	142653193	+	1	NA	NA	NA	1903	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.000000	0.452736	-65(TGCTTTTTAGGG,-,0.00),-63(CTTTTTAGGGTA,+,0.00)
mm_164180.1	chr15	76269066	76269266	-	1	NA	NA	NA	673	NR_045747	100038659	Mm.448549	NR_045747		Mirt2	ENSMUSG00000075583|Gm10872|Gm24562	myocardial infraction associated transcript 2	ncRNA	0.010000	0.492537	
mm_78593.1	chr9	37400120	37400320	+	1	NA	NA	NA	-1677	NM_028783	74144	Mm.485070	NM_028783	ENSMUSG00000032125	Robo4	1200012D01Rik|AI593217	roundabout guidance receptor 4	protein-coding	0.010000	0.437811	
mm_75162.1	chr8	36569980	36570180	-	1	NA	NA	NA	43863	NM_015802	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.040000	0.457711	
mm_53822.1	chr6	147256985	147257185	+	1	NA	NA	NA	6928	NM_008970	19227	Mm.28440	NM_008970	ENSMUSG00000048776	Pthlh	PLP|PTH-like|Pthrp	parathyroid hormone-like peptide	protein-coding	0.045000	0.552239	
mm_10126.1	chr2	3770552	3770752	+	1	NA	NA	NA	57194	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.005000	0.507463	-94(GTCCTTTTATGG,-,0.00),-92(CCTTTTATGGAA,+,0.00),-29(TCTTTTAGACAG,+,0.00)
mm_166127.1	chr4	154754815	154755015	+	1	NA	NA	NA	-87048	NM_028513	73353	Mm.30958	NM_028513	ENSMUSG00000051276	Actrt2	1700052K15Rik|Arp-T2|Arpm2	actin-related protein T2	protein-coding	0.010000	0.527363	
mm_127479.1	chr15	101274026	101274226	+	1	NA	NA	NA	7280	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.030000	0.582090	
mm_49673.1	chr6	31532093	31532293	+	1	NA	NA	NA	31744	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	0.000000	0.497512	-30(GGGTTTAAAAGT,-,0.00)
mm_100915.1	chr11	6274350	6274550	-	1	NA	NA	NA	387	NM_134020	103694	Mm.254495	NM_134020	ENSMUSG00000004394	Tmed4	1110014L17Rik|AI326346	transmembrane p24 trafficking protein 4	protein-coding	0.040000	0.592040	
mm_14849.1	chr2	148397434	148397634	+	1	NA	NA	NA	2157	NM_009219	20608	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0.005000	0.477612	
mm_60847.1	chr7	45800606	45800806	+	1	NA	NA	NA	13610	NM_011181	19158	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0.030000	0.606965	
mm_58424.1	chr7	3296694	3296894	+	1	NA	NA	NA	3766	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.050000	0.597015	
mm_153711.1	chr19	44398006	44398206	-	1	NA	NA	NA	9603	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.025000	0.557214	
mm_163757.1	chr13	119791020	119791220	-	1	NA	NA	NA	2	NM_001302550	72465	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0.125000	0.741294	
mm_123219.1	chr14	59441214	59441414	-	1	NA	NA	NA	333	NM_026908	69008	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding	0.045000	0.557214	
mm_133400.1	chr16	84834784	84834984	+	1	NA	NA	NA	114	NM_001302216	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.105000	0.666667	
mm_126225.1	chr15	78929565	78929765	+	1	NA	NA	NA	2940	NM_008495	16852	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	0.020000	0.557214	
mm_149426.1	chr19	11465340	11465540	+	1	NA	NA	NA	-3928	NM_001166376	73656	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.015000	0.323383	
mm_97226.1	chr11	75651105	75651305	+	1	NA	NA	NA	-304	NM_008659	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.030000	0.492537	
mm_20125.1	chr2	121271307	121271507	-	1	NA	NA	NA	0	NM_001290830	27223	Mm.215389	NM_013735	ENSMUSG00000043909	Trp53bp1	53BP1|Tp53bp1|m53BP1|p53BP1	transformation related protein 53 binding protein 1	protein-coding	0.080000	0.626866	
mm_168675.1	chr11	94037569	94037769	-	1	NA	NA	NA	-6536	NM_001025430	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.035000	0.497512	
mm_125756.1	chr15	73761324	73761524	+	1	NA	NA	NA	13398	NM_008975	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.010000	0.547264	
mm_76009.1	chr8	72723822	72724022	-	1	NA	NA	NA	652	NM_009188	20467	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0.080000	0.666667	
mm_158670.1	chrX	157595502	157595702	-	1	NA	NA	NA	3113	NM_172307	270669	Mm.37577	NM_172307	ENSMUSG00000046873	Mbtps2	9630032G22Rik|AI662535	membrane-bound transcription factor peptidase, site 2	protein-coding	0.025000	0.442786	52(TTTTTTATAGTC,+,0.00)
mm_55307.1	chr6	54972347	54972547	-	1	NA	NA	NA	165	NM_172729	107607	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.115000	0.741294	
mm_93614.1	chr10	117238571	117238771	-	1	NA	NA	NA	10	NM_029906	77397	Mm.118350	NM_029906	ENSMUSG00000020177	9530003J23Rik	Lyzf1	RIKEN cDNA 9530003J23 gene	protein-coding	0.025000	0.477612	34(GCTTAAATACTG,+,0.00)
mm_25987.1	chr3	133534321	133534521	+	1	NA	NA	NA	9969	NM_001346736	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.005000	0.442786	46(GGCCATAAAAAT,-,0.00)
mm_1139.1	chr1	60703895	60704095	+	1	NA	NA	NA	-42393	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.045000	0.462687	
mm_161359.1	chr14	56886756	56886956	+	1	NA	NA	NA	-939	NM_029498	76007	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.130000	0.776119	
mm_144288.1	chr18	12128724	12128924	+	1	NA	NA	NA	-26	NM_024182	66878	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	0.110000	0.661692	
mm_100854.1	chr11	5837652	5837852	-	1	NA	NA	NA	264	NM_017401	54125	Mm.260194	NM_017401	ENSMUSG00000020474	Polm	AI462166|B230309I03Rik|Tdt-N	polymerase (DNA directed), mu	protein-coding	0.075000	0.621891	
mm_46904.1	chr5	114273679	114273879	-	1	NA	NA	NA	-18	NM_148935	116810	Mm.17709	NM_148935	ENSMUSG00000042002	Foxn4	-	forkhead box N4	protein-coding	0.070000	0.631841	
mm_154844.1	chrX	20364578	20364778	+	1	NA	NA	NA	197	NR_110967	19889	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	0.045000	0.651741	
mm_114724.1	chr13	83715189	83715389	+	1	NA	NA	NA	-12817	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.050000	0.542289	16(GCTTATATAGAC,+,0.00)
mm_143304.1	chr17	65986024	65986224	-	1	NA	NA	NA	-34937	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.020000	0.437811	
mm_27234.1	chr3	36468859	36469059	-	1	NA	NA	NA	6565	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.000000	0.447761	
mm_39613.1	chr5	24256618	24256818	+	1	NA	NA	NA	-810	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.050000	0.601990	
mm_162696.1	chr10	20148795	20148995	+	1	NA	NA	NA	-25	NM_008635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.180000	0.845771	
mm_131594.1	chr16	18836478	18836678	+	1	NA	NA	NA	-2	NM_001033164	72307	Mm.36907	NM_001033164	ENSMUSG00000071632	2510002D24Rik	2410043I01Rik|AA163535|AA409624|DXMgi27	RIKEN cDNA 2510002D24 gene	protein-coding	0.030000	0.621891	
mm_29426.1	chr3	109021712	109021912	-	1	NA	NA	NA	5795	NM_001163567	329739	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.015000	0.363184	
mm_67561.1	chr7	81862416	81862616	-	1	NA	NA	NA	-171	NM_001291282	107769	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.015000	0.542289	
mm_102293.1	chr11	55410110	55410310	-	1	NA	NA	NA	9870	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.010000	0.482587	
mm_20921.1	chr2	150837313	150837513	-	1	NA	NA	NA	50617	NM_153781	110078	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.020000	0.437811	
mm_113686.1	chr13	42866296	42866496	+	1	NA	NA	NA	149	NM_001302636	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.025000	0.582090	
mm_135155.1	chr16	35857967	35858167	-	1	NA	NA	NA	13315	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.025000	0.482587	
mm_135379.1	chr16	44139171	44139371	-	1	NA	NA	NA	-252	NM_007508	11964	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.035000	0.447761	
mm_143434.1	chr17	70851624	70851824	-	1	NA	NA	NA	10	NM_001164075	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.050000	0.592040	
mm_2588.1	chr1	118683368	118683568	+	1	NA	NA	NA	55523	NM_023755	81879	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.000000	0.368159	-97(GACTATTAAAAG,-,0.00),-45(GCCCTTAAATAC,-,0.00),-43(CCTTAAATACTG,+,0.00)
mm_134112.1	chr16	9995712	9995912	-	1	NA	NA	NA	-3279	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.070000	0.557214	
mm_166123.1	chr4	152224263	152224463	+	1	NA	NA	NA	24519	NM_001146058	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.010000	0.437811	
mm_75529.1	chr8	57314522	57314722	-	1	NA	NA	NA	6237	NR_110474	102636514		NR_110474	ENSMUSG00000100510	Uph	-	upperhand	ncRNA	0.035000	0.412935	
mm_26600.1	chr3	152120215	152120415	+	1	NA	NA	NA	45585	NM_016867	54120	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.005000	0.442786	-32(GCTTATAAAAGT,-,0.00)
mm_166407.1	chr5	136581601	136581801	-	1	NA	NA	NA	-14211	NM_001291238	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.030000	0.502488	
mm_79044.1	chr9	46225404	46225604	+	1	NA	NA	NA	-3126	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.010000	0.527363	
mm_65073.1	chr7	19037117	19037317	-	1	NA	NA	NA	12840	NM_026605	68188	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	0.005000	0.487562	
mm_13966.1	chr2	121424488	121424688	+	1	NA	NA	NA	10686	NM_007952	14827	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	0.005000	0.427861	
mm_113933.1	chr13	49623432	49623632	+	1	NA	NA	NA	15461	NM_008760	18295	Mm.4258	NM_008760	ENSMUSG00000021390	Ogn	3110079A16Rik|OG|OIF|SLRR3A|mimecan|mimican	osteoglycin	protein-coding	0.005000	0.378109	
mm_167818.1	chr9	124282822	124283022	+	1	NA	NA	NA	29772	NM_001243118	630836	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0.015000	0.552239	
mm_146864.1	chr18	24603353	24603553	-	1	NA	NA	NA	364	NM_139143	106957	Mm.21688	NM_139143	ENSMUSG00000024270	Slc39a6	Ermelin	solute carrier family 39 (metal ion transporter), member 6	protein-coding	0.115000	0.691542	56(GCCTCGTAAAGG,-,0.00)
mm_6626.1	chr1	78174637	78174837	-	1	NA	NA	NA	22399	NM_008781	18505	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	0.000000	0.273632	
mm_84662.1	chr9	71895975	71896175	-	1	NA	NA	NA	21	NM_001253864	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.000000	0.422886	
mm_135273.1	chr16	38406720	38406920	-	1	NA	NA	NA	26325	NM_134102	85031	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.015000	0.522388	
mm_57565.1	chr6	127125734	127125934	-	1	NA	NA	NA	-16282	NM_177003	319801	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	0.015000	0.412935	
mm_118147.1	chr13	105054757	105054957	-	1	NA	NA	NA	73	NM_029879	52882	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.055000	0.557214	
mm_135841.1	chr16	58524144	58524344	-	1	NA	NA	NA	-932	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.025000	0.487562	
mm_41675.1	chr5	99682341	99682541	+	1	NA	NA	NA	46619	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.025000	0.462687	
mm_60848.1	chr7	45813894	45814094	+	1	NA	NA	NA	322	NM_011181	19158	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0.175000	0.815920	
mm_151780.1	chr19	5364806	5365006	-	1	NA	NA	NA	1457	NM_001038231	23825	Mm.358649	NM_011793	ENSMUSG00000024844	Banf1	Baf|Bcrp1|L2bp1/Baf	barrier to autointegration factor 1	protein-coding	0.010000	0.552239	-28(CTCCATAAAGGA,-,0.00)
mm_77936.1	chr9	7355209	7355409	+	1	NA	NA	NA	7935	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.388060	
mm_55820.1	chr6	83054237	83054437	-	1	NA	NA	NA	-184	NR_125891	11993	Mm.386752	NM_007517	ENSMUSG00000068328	Aup1	AA589454	ancient ubiquitous protein 1	protein-coding	0.045000	0.641791	
mm_94183.1	chr10	128923853	128924053	-	1	NA	NA	NA	-429	NM_015740	14533	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	0.015000	0.507463	
mm_381.1	chr1	34022697	34022897	+	1	NA	NA	NA	10972	NM_134448	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.005000	0.417910	
mm_130272.1	chr15	96698702	96698902	-	1	NA	NA	NA	896	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.150000	0.716418	
mm_99463.1	chr11	102435222	102435422	+	1	NA	NA	NA	5000	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.020000	0.522388	
mm_10609.1	chr2	19007746	19007946	+	1	NA	NA	NA	9527	NR_024323	74629	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0.020000	0.462687	-33(CTTTATAAAAGA,-,0.00)
mm_129293.1	chr15	77245439	77245639	-	1	NA	NA	NA	61514	NM_001110827	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.010000	0.567164	
mm_66762.1	chr7	46728656	46728856	-	1	NA	NA	NA	3847	NM_011316	20211	Mm.3489	NM_011316	ENSMUSG00000040017	Saa4	Saa-4|Saa-5	serum amyloid A 4	protein-coding	0.000000	0.452736	
mm_113446.1	chr13	35662036	35662236	+	1	NA	NA	NA	2274	NM_009881	12593	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.020000	0.502488	
mm_54854.1	chr6	42593185	42593385	-	1	NA	NA	NA	4087	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.020000	0.462687	
mm_61271.1	chr7	66324429	66324629	+	1	NA	NA	NA	57195	NR_106024	102465640		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.015000	0.482587	
mm_127876.1	chr15	8465215	8465415	-	1	NA	NA	NA	-20852	NM_201232	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.045000	0.447761	
mm_138611.1	chr17	35799618	35799818	+	1	NA	NA	NA	-21995	NM_133662	15937	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0.005000	0.457711	-34(TTATATAAAAGG,-,0.00)
mm_165683.1	chr3	90694091	90694291	-	1	NA	NA	NA	1530	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.005000	0.373134	
mm_69679.1	chr7	139985780	139985980	-	1	NA	NA	NA	994	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.015000	0.527363	
mm_154541.1	chrM	14194	14394	-	1	NA	NA	NA	NA	NA									0.025000	0.402985	
mm_171661.1	chr4	44123233	44123433	+	1	NA	NA	NA	1440	NR_040414	623796	Mm.490409	NR_040414	ENSMUSG00000084274	Gm12504	OTTMUSG00000007209	prothymosin alpha pseudogene	pseudo	0.015000	0.532338	
mm_92911.1	chr10	83624825	83625025	-	1	NA	NA	NA	23739	NM_145220	216190	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.040000	0.572139	
mm_37073.1	chr4	116163612	116163812	-	1	NA	NA	NA	3886	NM_133681	66805	Mm.45994	NM_133681	ENSMUSG00000028699	Tspan1	9030418M05Rik	tetraspanin 1	protein-coding	0.015000	0.462687	
mm_2821.1	chr1	131097854	131098054	+	1	NA	NA	NA	-111	NM_008551	17164	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.040000	0.611940	-96(GTCCTTAAAGGG,-,0.00),-94(CCTTAAAGGGGA,+,0.00),-34(GGGCCTTAAAGG,-,0.00),-33(GGCCTTAAAGGG,-,0.00),-32(GCCTTAAAGGGG,+,0.00),-31(CCTTAAAGGGGA,+,0.00)
mm_126424.1	chr15	80572397	80572597	+	1	NA	NA	NA	-100	NM_001289442	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.015000	0.572139	
mm_131388.1	chr16	14209501	14209701	+	1	NA	NA	NA	46326	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.030000	0.601990	
mm_952.1	chr1	57732871	57733071	+	1	NA	NA	NA	-41890	NM_144882	67198	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.005000	0.343284	
mm_41686.1	chr5	100518264	100518464	+	1	NA	NA	NA	55	NM_012001	26891	Mm.957	NM_012001	ENSMUSG00000035297	Cops4	AW208976|D5Ertd774e	COP9 signalosome subunit 4	protein-coding	0.075000	0.646766	
mm_159070.1	chr2	25236721	25236921	-	1	NA	NA	NA	-34	NM_001033410	329360	Mm.244652	NM_001033410	ENSMUSG00000089953	Rnf224	Gm757	ring finger protein 224	protein-coding	0.020000	0.547264	
mm_35288.1	chr4	21767054	21767254	-	1	NA	NA	NA	57	NM_029840	77032	Mm.87238	NM_029840	ENSMUSG00000028251	Tstd3	2610029I01Rik	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding	0.040000	0.646766	
mm_4726.1	chr1	181285712	181285912	+	1	NA	NA	NA	-66816	NM_028408	72978	Mm.338083	NM_028408	ENSMUSG00000026514	Cnih3	2900075G08Rik|CNIH-3	cornichon family AMPA receptor auxiliary protein 3	protein-coding	0.020000	0.542289	
mm_114938.1	chr13	96388222	96388422	+	1	NA	NA	NA	28	NM_026173	67463	Mm.86472	NM_026173	ENSMUSG00000021671	Poc5	1200014M14Rik|AV144706	POC5 centriolar protein	protein-coding	0.065000	0.572139	
mm_147777.1	chr18	61536440	61536640	-	1	NA	NA	NA	-4	NM_177828	328967	Mm.488098	NM_177828	ENSMUSG00000045094	Arhgef37	4933429F08Rik	Rho guanine nucleotide exchange factor (GEF) 37	protein-coding	0.110000	0.686567	
mm_136235.1	chr16	90726703	90726903	-	1	NA	NA	NA	568	NM_025642	66578	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0.030000	0.512438	
mm_27517.1	chr3	57234522	57234722	-	1	NA	NA	NA	67297	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	0.000000	0.417910	
mm_74007.1	chr8	121116070	121116270	+	1	NA	NA	NA	-1	NM_013519	14234	Mm.14092	NM_013519	ENSMUSG00000046714	Foxc2	Fkh14|Hfhbf3|MFH-1|Mfh1	forkhead box C2	protein-coding	0.060000	0.557214	14(ATCCCTAAAAGG,-,0.00)
mm_27329.1	chr3	50369583	50369783	-	1	NA	NA	NA	73930	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.288557	-71(GTTTTTATACAA,+,0.00)
mm_70519.1	chr8	12949322	12949522	+	1	NA	NA	NA	4	NM_001159485	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.025000	0.532338	
mm_103942.1	chr11	83850440	83850640	-	1	NA	NA	NA	-329	NM_001291268	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.025000	0.587065	
mm_69780.1	chr7	141062946	141063146	-	1	NA	NA	NA	1772	NM_177897	330671	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.010000	0.527363	
mm_114237.1	chr13	56609518	56609718	+	1	NA	NA	NA	15	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.085000	0.691542	
mm_148397.1	chr19	3768060	3768260	+	1	NA	NA	NA	739	NM_001167885	225888	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0.155000	0.741294	
mm_33121.1	chr4	124791337	124791537	+	1	NA	NA	NA	-11112	NM_008636	17764	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	0.005000	0.412935	
mm_112175.1	chr12	113421332	113421532	-	1	NA	NA	NA	-68133	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.462687	
mm_14501.1	chr2	132094631	132094831	+	1	NA	NA	NA	50377	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.020000	0.512438	
mm_80178.1	chr9	72274923	72275123	+	1	NA	NA	NA	135	NM_001311105	235469	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	0.155000	0.791045	
mm_56419.1	chr6	97252656	97252856	-	1	NA	NA	NA	24	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.000000	0.432836	
mm_63872.1	chr7	135952634	135952834	+	1	NA	NA	NA	-236355	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.005000	0.462687	
mm_44241.1	chr5	5314498	5314698	-	1	NA	NA	NA	-48530	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.015000	0.482587	
mm_100541.1	chr11	120672942	120673142	+	1	NA	NA	NA	69	NM_026877	68938	Mm.294020	NM_026877	ENSMUSG00000025142	Aspscr1	1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG	alveolar soft part sarcoma chromosome region, candidate 1 (human)	protein-coding	0.145000	0.746269	
mm_34520.1	chr4	148951034	148951234	+	1	NA	NA	NA	146742	NM_027195	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.030000	0.597015	
mm_46660.1	chr5	108675510	108675710	-	1	NA	NA	NA	-245	NM_174870	231583	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0.020000	0.522388	
mm_119034.1	chr14	30549076	30549276	+	1	NA	NA	NA	45	NM_009388	21881	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0.110000	0.696517	
mm_62735.1	chr7	110955868	110956068	+	1	NA	NA	NA	-9781	NM_010826	17540	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0.005000	0.507463	
mm_56448.1	chr6	97578009	97578209	-	1	NA	NA	NA	39548	NM_145148	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.005000	0.497512	
mm_135440.1	chr16	45408841	45409041	-	1	NA	NA	NA	112	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.035000	0.572139	
mm_37696.1	chr4	129268699	129268899	-	1	NA	NA	NA	-7395	NM_001285867	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.005000	0.542289	
mm_45196.1	chr5	52369110	52369310	-	1	NA	NA	NA	5406	NM_011435	20657	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	0.015000	0.517413	
mm_167229.1	chr8	13192257	13192457	-	1	NA	NA	NA	-3259	NR_035494	100316713		NR_035494	ENSMUSG00000088054	Mir1968	mir-1968|mmu-mir-1968	microRNA 1968	ncRNA	0.035000	0.537313	
mm_17619.1	chr2	30967751	30967951	-	1	NA	NA	NA	67	NM_144884	30931	Mm.154994	NM_144884	ENSMUSG00000026849	Tor1a	DQ2|Dyt1|torsinA	torsin family 1, member A (torsin A)	protein-coding	0.120000	0.726368	
mm_92189.1	chr10	68101991	68102191	-	1	NA	NA	NA	122493	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.025000	0.422886	
mm_109155.1	chr12	108178756	108178956	+	1	NA	NA	NA	428	NM_028262	52690	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0.125000	0.781095	
mm_135980.1	chr16	75053625	75053825	-	1	NA	NA	NA	532336	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.000000	0.532338	
mm_18561.1	chr2	65238534	65238734	-	1	NA	NA	NA	-8	NM_027225	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.145000	0.805970	
mm_107820.1	chr12	67651275	67651475	+	1	NA	NA	NA	-428826	NM_207010	320772	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	0.015000	0.417910	
mm_35797.1	chr4	46538299	46538499	-	1	NA	NA	NA	-2258	NM_029077	74735	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	0.000000	0.552239	
mm_44285.1	chr5	8353384	8353584	-	1	NA	NA	NA	14676	NM_001007221	11496	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.010000	0.318408	
mm_13573.1	chr2	112305651	112305851	+	1	NA	NA	NA	21063	NM_133648	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.000000	0.388060	-66(TGGTTTAAAAGC,-,0.00)
mm_4746.1	chr1	182125293	182125493	+	1	NA	NA	NA	656	NM_012058	27058	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	0.020000	0.417910	
mm_139589.1	chr17	57223837	57224037	+	1	NA	NA	NA	4199	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.030000	0.577114	
mm_151008.1	chr19	46689823	46690023	+	1	NA	NA	NA	17	NM_025563	66439	Mm.87163	NM_025563	ENSMUSG00000062376	Borcs7	2010012O05Rik|4930569L17Rik|AI413851|AI467257	BLOC-1 related complex subunit 7	protein-coding	0.095000	0.577114	
mm_91752.1	chr10	50520852	50521052	-	1	NA	NA	NA	-71717	NM_198007	77987	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.000000	0.457711	
mm_14083.1	chr2	125068026	125068226	+	1	NA	NA	NA	-1	NM_175034	317750	Mm.330538	NM_175034	ENSMUSG00000035183	Slc24a5	F630045L20Rik|JSX|NCKX5|NCX5|Oca6	solute carrier family 24, member 5	protein-coding	0.020000	0.592040	
mm_96651.1	chr11	69368195	69368395	+	1	NA	NA	NA	1131	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.050000	0.651741	
mm_89461.1	chr10	93309617	93309817	+	1	NA	NA	NA	1442	NM_001322268	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.035000	0.522388	
mm_37044.1	chr4	115781018	115781218	-	1	NA	NA	NA	-84	NM_029196	75173	Mm.331798	NM_029196	ENSMUSG00000044556	Tex38	4930544O15Rik|Theg4	testis expressed 38	protein-coding	0.010000	0.507463	
mm_131942.1	chr16	24012647	24012847	+	1	NA	NA	NA	-24135	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.000000	0.467662	
mm_144335.1	chr18	14331761	14331961	+	1	NA	NA	NA	99555	NR_045373	74529	Mm.400519	NR_045373		8430422H06Rik	-	RIKEN cDNA 8430422H06 gene	ncRNA	0.005000	0.577114	
mm_119263.1	chr14	34016962	34017162	+	1	NA	NA	NA	-24016	NM_001034880	432838	Mm.318383	NM_001034880	ENSMUSG00000072624	Gm5460	EG432838	predicted gene 5460	protein-coding	0.000000	0.517413	
mm_5185.1	chr1	13095971	13096171	-	1	NA	NA	NA	31092	NM_001081209	383491	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0.010000	0.512438	
mm_106875.1	chr12	8010664	8010864	+	1	NA	NA	NA	33087	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.398010	
mm_149478.1	chr19	11750158	11750358	+	1	NA	NA	NA	2699	NM_008118	14603	Mm.456	NM_008118	ENSMUSG00000024682	Gif	AV073125	gastric intrinsic factor	protein-coding	0.045000	0.562189	
mm_83231.1	chr9	42398552	42398752	-	1	NA	NA	NA	1277	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.010000	0.422886	
mm_129093.1	chr15	75928567	75928767	-	1	NA	NA	NA	1063	NM_031201	22122	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	0.010000	0.537313	
mm_45290.1	chr5	65019047	65019247	-	1	NA	NA	NA	48829	NR_030577	100124451		NR_030577	ENSMUSG00000077042	Mir574	Mirn574|mir-574|mmu-mir-574	microRNA 574	ncRNA	0.005000	0.502488	-86(CATTTTAAAGAC,+,0.00)
mm_76955.1	chr8	106011346	106011546	-	1	NA	NA	NA	-32	NM_025518	66369	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	0.095000	0.631841	
mm_94599.1	chr11	11829304	11829504	+	1	NA	NA	NA	-20442	NM_001163360	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.015000	0.507463	
mm_152013.1	chr19	5989076	5989276	-	1	NA	NA	NA	-3033	NM_198650	381203	Mm.329638	NM_198650	ENSMUSG00000037451	Slc22a20	Gm963|OAT1-L|mOAT6	solute carrier family 22 (organic anion transporter), member 20	protein-coding	0.020000	0.621891	
mm_135177.1	chr16	35938996	35939196	-	1	NA	NA	NA	-69	NM_001013371	209200	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0.075000	0.621891	
mm_24178.1	chr3	88578410	88578610	+	1	NA	NA	NA	-1161	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.000000	0.502488	-34(CACTATAAAAGG,-,0.00)
mm_35097.1	chr4	8823146	8823346	-	1	NA	NA	NA	132840	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.010000	0.462687	
mm_24780.1	chr3	95539974	95540174	+	1	NA	NA	NA	13288	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.015000	0.407960	
mm_100939.1	chr11	6522751	6522951	-	1	NA	NA	NA	-1893	NM_178440	246177	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0.010000	0.547264	-34(AGGCTTAAAAGG,-,0.00),-32(GCTTAAAAGGAA,+,0.00)
mm_147562.1	chr18	54989509	54989709	-	1	NA	NA	NA	571	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.005000	0.393035	
mm_151581.1	chr19	61224377	61224577	+	1	NA	NA	NA	3941	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.010000	0.388060	
mm_24381.1	chr3	90248764	90248964	+	1	NA	NA	NA	672	NM_013901	30791	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0.025000	0.527363	
mm_100372.1	chr11	119126641	119126841	+	1	NA	NA	NA	27396	NR_105899	102465563		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA	0.040000	0.502488	
mm_168234.1	chr10	81687306	81687506	+	1	NA	NA	NA	-17419	NM_001243067	73610	Mm.490466	NM_001243067	ENSMUSG00000096795	Zfp433	1700123A16Rik	zinc finger protein 433	protein-coding	0.055000	0.587065	
mm_62270.1	chr7	99535596	99535796	+	1	NA	NA	NA	210	NM_177231	109689	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	0.155000	0.786070	
mm_43345.1	chr5	135128565	135128765	+	1	NA	NA	NA	-21046	NM_013763	27368	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0.015000	0.611940	
mm_40753.1	chr5	66857644	66857844	+	1	NA	NA	NA	-110672	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.010000	0.368159	86(GGTTATAAAAGA,-,0.00)
mm_105504.1	chr11	106161475	106161675	-	1	NA	NA	NA	-1433	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.035000	0.582090	
mm_159989.1	chr6	115944728	115944928	+	1	NA	NA	NA	-103	NM_001346702	171506	Mm.21899	NM_138311	ENSMUSG00000042279	H1foo	C86609|H1.8|H1fo|H1oo	H1 histone family, member O, oocyte-specific	protein-coding	0.020000	0.537313	78(AGGTATTTAAGG,-,0.00)
mm_102606.1	chr11	62416219	62416419	-	1	NA	NA	NA	22196	NM_001252313	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.000000	0.378109	
mm_157453.1	chrX	43152651	43152851	-	1	NA	NA	NA	122033	NM_011855	23963	Mm.327698	NM_011855	ENSMUSG00000016150	Tenm1	Odz1|Odz2|TCAP-1|Ten-m1|ten-1	teneurin transmembrane protein 1	protein-coding	0.005000	0.258706	
mm_85297.1	chr9	100486377	100486577	-	1	NA	NA	NA	-4	NM_001033543	213208	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.005000	0.522388	
mm_150776.1	chr19	44294169	44294369	+	1	NA	NA	NA	593	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.040000	0.512438	
mm_95853.1	chr11	57831599	57831799	+	1	NA	NA	NA	448	NM_008213	15110	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed transcript 1	protein-coding	0.060000	0.646766	
mm_12507.1	chr2	71874986	71875186	+	1	NA	NA	NA	1862	NM_172665	228026	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.000000	0.452736	
mm_22853.1	chr3	28263326	28263526	+	1	NA	NA	NA	212	NM_001163009	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.110000	0.681592	-81(CCATTTAAATAC,+,0.00)
mm_117770.1	chr13	96542340	96542540	-	1	NA	NA	NA	139	NM_012048	27015	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	0.075000	0.616915	-34(GCGCCTAAAGGC,-,0.00)
mm_125508.1	chr15	55557464	55557664	+	1	NA	NA	NA	156	NM_001168250	105837	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0.065000	0.537313	
mm_147374.1	chr18	43546760	43546960	-	1	NA	NA	NA	-108574	NM_001291455	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.035000	0.497512	
mm_2990.1	chr1	133163786	133163986	+	1	NA	NA	NA	32720	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.110000	0.676617	
mm_129122.1	chr15	76119204	76119404	-	1	NA	NA	NA	891	NM_144848	223650	Mm.259929	NM_144848		Eppk1	6230424I18Rik|EPIPL|EPIPL1|EPPK	epiplakin 1	protein-coding	0.010000	0.587065	
mm_121047.1	chr14	80022614	80022814	+	1	NA	NA	NA	22412	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding	0.000000	0.303483	
mm_83230.1	chr9	42394501	42394701	-	1	NA	NA	NA	5328	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.005000	0.383085	
mm_22684.1	chr3	16214598	16214798	+	1	NA	NA	NA	31515	NM_001145919	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.005000	0.363184	66(CTTTTTATGACC,+,0.00)
mm_137303.1	chr17	24850606	24850806	+	1	NA	NA	NA	39	NM_001159626	14651	Mm.43784	NM_024284	ENSMUSG00000024158	Hagh	BC019817|Glo-2|Glo2|Rsp29	hydroxyacyl glutathione hydrolase	protein-coding	0.130000	0.731343	
mm_130680.1	chr15	100678018	100678218	-	1	NA	NA	NA	-8618	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.005000	0.512438	
mm_148002.1	chr18	67724443	67724643	-	1	NA	NA	NA	78	NM_001127177	19255	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	0.125000	0.701493	
mm_454.1	chr1	36131919	36132119	+	1	NA	NA	NA	12294	NR_105862	102465540		NR_105862	ENSMUSG00000098752	Mir6897	Gm27652|mmu-mir-6897	microRNA 6897	ncRNA	0.015000	0.427861	
mm_264.1	chr1	20917747	20917947	+	1	NA	NA	NA	27225	NM_028829	74229	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	0.020000	0.457711	
mm_64960.1	chr7	16614518	16614718	-	1	NA	NA	NA	375	NM_172739	232906	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.140000	0.815920	
mm_55843.1	chr6	83317463	83317663	-	1	NA	NA	NA	41	NM_008638	17768	Mm.443	NM_008638	ENSMUSG00000005667	Mthfd2	AW558851|NMDMC	methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	protein-coding	0.125000	0.696517	
mm_148250.1	chr18	80712971	80713171	-	1	NA	NA	NA	0	NM_198429	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.120000	0.721393	-36(AGCTTTAAAAAG,-,0.00),-35(GCTTTAAAAAGG,+,0.00),-34(CTTTAAAAAGGC,+,0.00)
mm_56517.1	chr6	99484092	99484292	-	1	NA	NA	NA	36801	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.005000	0.512438	
mm_140610.1	chr17	10839896	10840096	-	1	NA	NA	NA	195	NM_027032	69310	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.015000	0.482587	-16(CCTTTTAGAGTG,+,0.00)
mm_20313.1	chr2	127277689	127277889	-	1	NA	NA	NA	7560	NM_139308	99138	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0.005000	0.427861	
mm_88022.1	chr10	67189179	67189379	+	1	NA	NA	NA	3529	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.000000	0.532338	
mm_55716.1	chr6	73221545	73221745	-	1	NA	NA	NA	-14	NM_001164669	330355	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0.040000	0.572139	
mm_47660.1	chr5	125433992	125434192	-	1	NA	NA	NA	-44	NM_203319	208144	Mm.296385	NM_203319	ENSMUSG00000029480	Dhx37	Gm1050|Gm451|mKIAA1517	DEAH (Asp-Glu-Ala-His) box polypeptide 37	protein-coding	0.110000	0.691542	
mm_152095.1	chr19	6909513	6909713	-	1	NA	NA	NA	32	NM_012021	54683	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.075000	0.671642	
mm_70689.1	chr8	15011334	15011534	+	1	NA	NA	NA	409	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.110000	0.746269	
mm_94097.1	chr10	128549048	128549248	-	1	NA	NA	NA	20	NM_018860	67945	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	0.095000	0.601990	
mm_73631.1	chr8	110721374	110721574	+	1	NA	NA	NA	-2	NM_198625	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.160000	0.800995	
mm_88944.1	chr10	81321163	81321363	+	1	NA	NA	NA	160	NM_027381	70312	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.155000	0.716418	
mm_52837.1	chr6	121636174	121636374	+	1	NA	NA	NA	101	NM_175628	232345	Mm.30151	NM_175628	ENSMUSG00000030111	A2m	A2mp	alpha-2-macroglobulin	protein-coding	0.035000	0.641791	
mm_81188.1	chr9	107542138	107542338	+	1	NA	NA	NA	29	NM_018879	56032	Mm.11337	NM_018879	ENSMUSG00000010057	Nprl2	2810446G01Rik|G21|NPR2L|Tusc4	nitrogen permease regulator-like 2	protein-coding	0.070000	0.616915	
mm_119571.1	chr14	50357792	50357992	+	1	NA	NA	NA	-22	NM_205819	239081	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	0.005000	0.427861	
mm_1786.1	chr1	78602253	78602453	+	1	NA	NA	NA	-55472	NM_001033606	74205	Mm.276016	NM_028817	ENSMUSG00000032883	Acsl3	2610510B12Rik|Acs3|C85929|Facl3|Pro2194	acyl-CoA synthetase long-chain family member 3	protein-coding	0.005000	0.437811	-25(CTGTATAAAAAC,-,0.00)
mm_103623.1	chr11	78696419	78696619	-	1	NA	NA	NA	906	NM_008702	18099	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0.005000	0.417910	
mm_169015.1	chr13	108509083	108509283	-	1	NA	NA	NA	-144994	NM_011056	238871	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	0.030000	0.572139	
mm_3291.1	chr1	136678047	136678247	+	1	NA	NA	NA	-5249	NR_045324	100503460	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.005000	0.522388	
mm_146493.1	chr18	3270677	3270877	-	1	NA	NA	NA	10355	NM_001311066	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.005000	0.442786	
mm_12179.1	chr2	63221753	63221953	+	1	NA	NA	NA	-37566	NM_133207	170738	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.005000	0.338308	40(GGCTTTTTAAAA,-,0.00),71(CCTTTTAAATGT,+,0.00)
mm_82527.1	chr9	20667786	20667986	-	1	NA	NA	NA	15756	NM_023371	23988	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	0.005000	0.457711	-21(GCCTTTTTATGG,-,0.00),-19(CTTTTTATGGAT,+,0.00)
mm_10110.1	chr2	3704693	3704893	+	1	NA	NA	NA	-8665	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.010000	0.407960	
mm_57800.1	chr6	129331659	129331859	-	1	NA	NA	NA	22	NM_199034	381816	Mm.46114	NM_199034	ENSMUSG00000047720	4922502D21Rik	Clec2m|Gm1074|SPATA78	RIKEN cDNA 4922502D21 gene	protein-coding	0.035000	0.547264	
mm_143274.1	chr17	65674331	65674531	-	1	NA	NA	NA	-32227	NM_001146002	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.010000	0.378109	
mm_146302.1	chr18	80253180	80253380	+	1	NA	NA	NA	-1965	NM_001164420	66943	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.005000	0.522388	
mm_15663.1	chr2	163323237	163323437	+	1	NA	NA	NA	74636	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	0.000000	0.363184	
mm_64546.1	chr7	144321046	144321246	+	1	NA	NA	NA	36761	NM_001081370	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.005000	0.437811	
mm_17716.1	chr2	32386960	32387160	-	1	NA	NA	NA	679	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.020000	0.517413	
mm_40167.1	chr5	35814264	35814464	+	1	NA	NA	NA	56484	NM_001177698	231148	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0.045000	0.621891	
mm_142074.1	chr17	35700463	35700663	-	1	NA	NA	NA	27	NM_001198833	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.160000	0.840796	
mm_141905.1	chr17	34957035	34957235	-	1	NA	NA	NA	2103	NM_010478	15511	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	0.050000	0.656716	
mm_16227.1	chr2	173155846	173156046	+	1	NA	NA	NA	2873	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.020000	0.517413	
mm_125124.1	chr15	30172830	30173030	+	1	NA	NA	NA	337	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.170000	0.786070	
mm_151649.1	chr19	4063997	4064197	-	1	NA	NA	NA	-4803	NM_144869	225884	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.000000	0.308458	
mm_69362.1	chr7	130539847	130540047	-	1	NA	NA	NA	7434	NM_001162855	67872	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0.015000	0.412935	
mm_55849.1	chr6	83386637	83386837	-	1	NA	NA	NA	14365	NR_105793	102465194		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	0.010000	0.368159	41(GTTTATAAACAC,+,0.00)
mm_105986.1	chr11	115627606	115627806	-	1	NA	NA	NA	589	NM_001252394	67283	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.045000	0.587065	
mm_79310.1	chr9	52048807	52049007	+	1	NA	NA	NA	-202	NR_023357	629557	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.150000	0.761194	
mm_137759.1	chr17	29489134	29489334	+	1	NA	NA	NA	-1811	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.010000	0.393035	77(ATCTTTATAAGC,-,0.00)
mm_149068.1	chr19	8850847	8851047	+	1	NA	NA	NA	162	NM_001013019	68852	Mm.265792	NM_001013019	ENSMUSG00000071656	Lrrn4cl	1110067I12Rik	LRRN4 C-terminal like	protein-coding	0.015000	0.527363	-32(GAGTATAAAAGT,-,0.00)
mm_98950.1	chr11	98447022	98447222	+	1	NA	NA	NA	288	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.040000	0.507463	
mm_95361.1	chr11	48901206	48901406	+	1	NA	NA	NA	846	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.000000	0.477612	
mm_173313.1	chrY	90735011	90735211	+	1	NA	NA	NA	19939	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.000000	0.472637	
mm_98830.1	chr11	97415465	97415665	+	1	NA	NA	NA	-34595	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.090000	0.736318	
mm_74899.1	chr8	25201230	25201430	-	1	NA	NA	NA	212	NM_199323	320165	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.125000	0.711443	
mm_113482.1	chr13	37345252	37345452	+	1	NA	NA	NA	7	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.030000	0.507463	
mm_90005.1	chr10	112837625	112837825	+	1	NA	NA	NA	91301	NM_001033474	382423	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132|ENSMUSG00000074747	ataxin 7-like 3B	protein-coding	0.005000	0.402985	
mm_135571.1	chr16	50330880	50331080	-	1	NA	NA	NA	101409	NM_027444	70508	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.010000	0.462687	
mm_1169.1	chr1	60913569	60913769	+	1	NA	NA	NA	4644	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.000000	0.442786	
mm_75648.1	chr8	65129223	65129423	-	1	NA	NA	NA	214	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA	0.035000	0.502488	
mm_27504.1	chr3	55539871	55540071	-	1	NA	NA	NA	78213	NM_001195540	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.025000	0.572139	
mm_125543.1	chr15	58405738	58405938	+	1	NA	NA	NA	-9630	NM_145959	210998	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.005000	0.452736	
mm_164938.1	chr18	86432926	86433126	+	1	NA	NA	NA	38074	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.000000	0.452736	
mm_171025.1	chr2	84650551	84650751	-	1	NA	NA	NA	89	NM_001085449	12388	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.015000	0.562189	
mm_132719.1	chr16	43510174	43510374	+	1	NA	NA	NA	-90078	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.000000	0.432836	
mm_143872.1	chr17	84186947	84187147	-	1	NA	NA	NA	900	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.090000	0.681592	
mm_99395.1	chr11	102146261	102146461	+	1	NA	NA	NA	848	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	0.030000	0.582090	-41(TGCTAGATAAGG,-,0.00)
mm_37595.1	chr4	126736141	126736341	-	1	NA	NA	NA	28	NM_198960	332937	Mm.331881	NM_198960	ENSMUSG00000042477	Tfap2e	AI505200|AP-2e|Tcfap2e	transcription factor AP-2, epsilon	protein-coding	0.080000	0.641791	-74(TCTTTAATGCGC,+,0.00)
mm_31339.1	chr4	46469873	46470073	+	1	NA	NA	NA	19047	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.010000	0.447761	
mm_18315.1	chr2	57107839	57108039	-	1	NA	NA	NA	7099	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.015000	0.412935	
mm_83271.1	chr9	42985629	42985829	-	1	NA	NA	NA	-41358	NM_175481	110637	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0.005000	0.388060	
mm_145825.1	chr18	65437285	65437485	+	1	NA	NA	NA	6388	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.477612	
mm_156069.1	chrX	109161165	109161365	+	1	NA	NA	NA	-35491	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.010000	0.313433	
mm_51972.1	chr6	91758459	91758659	+	1	NA	NA	NA	48834	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.005000	0.368159	
mm_42192.1	chr5	112276588	112276788	+	1	NA	NA	NA	-3	NM_001326590	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.130000	0.726368	
mm_103174.1	chr11	70459737	70459937	-	1	NA	NA	NA	147	NM_023158	66102	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.035000	0.507463	
mm_95765.1	chr11	54907093	54907293	+	1	NA	NA	NA	4339	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.020000	0.487562	7(TTCCTTTTAAGC,-,0.00),9(CCTTTTAAGCAG,+,0.00)
mm_128128.1	chr15	31338598	31338798	-	1	NA	NA	NA	29061	NM_001164441	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.020000	0.512438	
mm_151757.1	chr19	5106895	5107095	-	1	NA	NA	NA	1	NM_029576	76308	Mm.182563	NM_029576	ENSMUSG00000024870	Rab1b	1110011F09Rik	RAB1B, member RAS oncogene family	protein-coding	0.140000	0.716418	
mm_36198.1	chr4	62348028	62348228	-	1	NA	NA	NA	12420	NM_001045528	338355	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.015000	0.497512	
mm_124489.1	chr14	121738541	121738741	-	1	NA	NA	NA	288	NM_001128308	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.025000	0.507463	
mm_154476.1	chrM	4136	4336	-	1	NA	NA	NA	NA	NA									0.010000	0.373134	
mm_164308.1	chr15	103897363	103897563	+	1	NA	NA	NA	1837	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.020000	0.417910	
mm_76618.1	chr8	91629621	91629821	-	1	NA	NA	NA	171933	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.030000	0.577114	
mm_42495.1	chr5	115474578	115474778	+	1	NA	NA	NA	8412	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.035000	0.522388	
mm_137739.1	chr17	29360862	29361062	+	1	NA	NA	NA	48	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.010000	0.592040	
mm_164991.1	chr19	12075929	12076129	+	1	NA	NA	NA	-1399	NM_001011853	258155	Mm.377363	NM_001011853	ENSMUSG00000067526	Olfr1425	MOR239-7	olfactory receptor 1425	protein-coding	0.005000	0.353234	
mm_54148.1	chr6	22343615	22343815	-	1	NA	NA	NA	12366	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.015000	0.437811	
mm_98536.1	chr11	95009809	95010009	+	1	NA	NA	NA	30	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.115000	0.716418	
mm_171359.1	chr4	117154390	117154590	-	1	NA	NA	NA	84	NR_028524	100217424		NR_028524	ENSMUSG00000065680	Snord38a	MBII-329	small nucleolar RNA, C/D box 38A	snoRNA	0.010000	0.437811	
mm_67866.1	chr7	99156965	99157165	-	1	NA	NA	NA	-15921	NM_178635	78610	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.025000	0.552239	
mm_101011.1	chr11	8504940	8505140	-	1	NA	NA	NA	159495	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.005000	0.442786	
mm_46993.1	chr5	115334175	115334375	-	1	NA	NA	NA	6886	NM_029645	384281	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	0.000000	0.407960	-40(GCCCCTAAAAAA,-,0.00)
mm_167812.1	chr9	123931790	123931990	+	1	NA	NA	NA	36802	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.005000	0.472637	
mm_127938.1	chr15	10588950	10589150	-	1	NA	NA	NA	-11243	NR_033541	100038608	Mm.450744	NR_033541		Gm10389	ENSMUSG00000072658	predicted gene 10389	ncRNA	0.000000	0.407960	
mm_17483.1	chr2	28562343	28562543	-	1	NA	NA	NA	960	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.010000	0.542289	
mm_45380.1	chr5	66122553	66122753	-	1	NA	NA	NA	-24474	NM_139065	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.025000	0.527363	
mm_88158.1	chr10	69681534	69681734	+	1	NA	NA	NA	147926	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.010000	0.462687	
mm_40553.1	chr5	58396559	58396759	+	1	NA	NA	NA	56339	NR_046190	78163	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA	0.005000	0.343284	
mm_52485.1	chr6	114643038	114643238	+	1	NA	NA	NA	41	NM_001253717	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.100000	0.621891	
mm_138509.1	chr17	35236513	35236713	+	1	NA	NA	NA	17	NM_023179	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.055000	0.631841	
mm_91114.1	chr10	19186366	19186566	-	1	NA	NA	NA	19228	NR_038022	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.025000	0.512438	
mm_91624.1	chr10	41752139	41752339	-	1	NA	NA	NA	57424	NM_001243075	103268	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	0.010000	0.497512	
mm_13324.1	chr2	102781708	102781908	+	1	NA	NA	NA	75370	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.010000	0.417910	
mm_28809.1	chr3	96256165	96256365	-	1	NA	NA	NA	7052	NM_033596	97122	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0.015000	0.422886	
mm_166870.1	chr7	24765901	24766101	-	1	NA	NA	NA	-5690	NM_026862	68891	Mm.292848	NM_026862	ENSMUSG00000052212	Cd177	1190003K14Rik|Pdp3	CD177 antigen	protein-coding	0.025000	0.517413	
mm_62748.1	chr7	111122086	111122286	+	1	NA	NA	NA	489	NR_015573	75479	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0.065000	0.626866	
mm_58402.1	chr7	3218301	3218501	+	1	NA	NA	NA	-225	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.020000	0.442786	
mm_130608.1	chr15	99820963	99821163	-	1	NA	NA	NA	-914	NM_023063	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.010000	0.487562	
mm_88613.1	chr10	79825915	79826115	+	1	NA	NA	NA	4994	NM_030218	78906	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.035000	0.562189	
mm_32778.1	chr4	116708028	116708228	+	1	NA	NA	NA	257	NM_025962	67096	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0.015000	0.462687	-74(AGACATAAAAGG,-,0.00)
mm_131593.1	chr16	18832080	18832280	+	1	NA	NA	NA	-4400	NM_001033164	72307	Mm.36907	NM_001033164	ENSMUSG00000071632	2510002D24Rik	2410043I01Rik|AA163535|AA409624|DXMgi27	RIKEN cDNA 2510002D24 gene	protein-coding	0.000000	0.432836	
mm_73863.1	chr8	118354149	118354349	+	1	NA	NA	NA	70638	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.010000	0.407960	
mm_65157.1	chr7	19643006	19643206	-	1	NA	NA	NA	-13668	NM_009046	19698	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.020000	0.527363	
mm_42371.1	chr5	114925320	114925520	+	1	NA	NA	NA	2180	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.000000	0.427861	
mm_62789.1	chr7	112679283	112679483	+	1	NA	NA	NA	63	NM_009346	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.160000	0.731343	
mm_104162.1	chr11	87324967	87325167	-	1	NA	NA	NA	33927	NM_177167	320472	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	0.005000	0.422886	
mm_140616.1	chr17	10840219	10840419	-	1	NA	NA	NA	-40	NM_001317726	50873	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.095000	0.631841	
mm_166988.1	chr7	45917471	45917671	+	1	NA	NA	NA	3278	NM_001146346	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.020000	0.557214	
mm_116287.1	chr13	35026944	35027144	-	1	NA	NA	NA	-32900	NM_001110331	23986	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0.030000	0.487562	
mm_63484.1	chr7	127746642	127746842	+	1	NA	NA	NA	-33	NM_172748	233902	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.050000	0.691542	
mm_10214.1	chr2	5848027	5848227	+	1	NA	NA	NA	3093	NM_016918	53893	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	0.005000	0.358209	
mm_132170.1	chr16	32303711	32303911	+	1	NA	NA	NA	26350	NM_027355	70238	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	0.005000	0.383085	
mm_85667.1	chr9	107675896	107676096	-	1	NA	NA	NA	3596	NM_008140	14685	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.060000	0.512438	
mm_100789.1	chr11	4939441	4939641	-	1	NA	NA	NA	-7980	NM_001243043	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.010000	0.522388	
mm_149415.1	chr19	11426140	11426340	+	1	NA	NA	NA	-17318	NM_021718	60361	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	0.005000	0.402985	
mm_10314.1	chr2	11172262	11172462	+	1	NA	NA	NA	-20	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.130000	0.746269	
mm_154259.1	chr19	60768806	60769006	-	1	NA	NA	NA	5479	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.025000	0.398010	
mm_110066.1	chr12	21373512	21373712	-	1	NA	NA	NA	20	NR_102380	11491	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	0.115000	0.706468	
mm_23937.1	chr3	84189904	84190104	+	1	NA	NA	NA	15366	NR_036654	624713	Mm.442604	NR_036654		Gm6525	EG624713	ribosomal protein L36a pseudogene	pseudo	0.010000	0.582090	
mm_88565.1	chr10	79665369	79665569	+	1	NA	NA	NA	895	NM_013591	17123	Mm.391556	NM_013591	ENSMUSG00000020310	Madcam1	AV211525	mucosal vascular addressin cell adhesion molecule 1	protein-coding	0.020000	0.626866	
mm_1810.1	chr1	81093886	81094086	+	1	NA	NA	NA	16669	NM_172849	241134	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	0.010000	0.442786	
mm_168602.1	chr1	174609678	174609878	+	1	NA	NA	NA	107953	NM_019445	54418	Mm.330620	NM_019445	ENSMUSG00000028354	Fmn2	AU024104	formin 2	protein-coding	0.005000	0.587065	
mm_14753.1	chr2	144697232	144697432	+	1	NA	NA	NA	97379	NM_025314	66044	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	0.005000	0.368159	
mm_133224.1	chr16	76373103	76373303	+	1	NA	NA	NA	-154	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.110000	0.726368	-16(CCTTTTCTGCCC,+,0.00)
mm_93786.1	chr10	120476884	120477084	-	1	NA	NA	NA	-515	NM_010441	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0.080000	0.636816	
mm_125970.1	chr15	76294249	76294449	+	1	NA	NA	NA	-85	NM_001195537	100503915	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	ENSMUSG00000071724|Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	0.070000	0.542289	
mm_94870.1	chr11	24078207	24078407	+	1	NA	NA	NA	251	NM_001159289	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.090000	0.557214	
mm_25456.1	chr3	108415884	108416084	+	1	NA	NA	NA	-490	NM_001004177	53883	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	0.160000	0.791045	
mm_139031.1	chr17	46161059	46161259	+	1	NA	NA	NA	127	NM_001145979	56055	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.110000	0.756219	
mm_3326.1	chr1	137924899	137925099	+	1	NA	NA	NA	-41456	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.015000	0.412935	
mm_141582.1	chr17	32389288	32389488	-	1	NA	NA	NA	51	NR_033525	22404	Mm.274948	NM_011717	ENSMUSG00000024050	Wiz	-	widely-interspaced zinc finger motifs	protein-coding	0.100000	0.716418	-19(CGATTTAAAGGG,-,0.00)
mm_63952.1	chr7	139894852	139895052	+	1	NA	NA	NA	256	NM_177261	76484	Mm.44442	NM_177261	ENSMUSG00000066129	Kndc1	2410012C07Rik|B830014K08Rik|VKIND|very-kind	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding	0.120000	0.776119	
mm_143738.1	chr17	81493351	81493551	-	1	NA	NA	NA	244936	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.015000	0.407960	
mm_143199.1	chr17	62761042	62761242	-	1	NA	NA	NA	120175	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.010000	0.398010	
mm_154961.1	chrX	36877485	36877685	+	1	NA	NA	NA	3290	NM_019668	22209	Mm.395649	NM_019668	ENSMUSG00000016308	Ube2a	HHR6A|HR6A|Mhr6a	ubiquitin-conjugating enzyme E2A	protein-coding	0.005000	0.388060	
mm_140903.1	chr17	24150797	24150997	-	1	NA	NA	NA	25	NM_001286662	18607	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	0.010000	0.542289	
mm_160642.1	chr9	108985814	108986014	+	1	NA	NA	NA	-249	NM_145077	171530	Mm.388865	NM_145077	ENSMUSG00000049699	Ucn2	Ucn II|Ucn-2|ucn-II	urocortin 2	protein-coding	0.015000	0.542289	
mm_46202.1	chr5	98031207	98031407	-	1	NA	NA	NA	-345	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.080000	0.597015	
mm_140168.1	chr17	80307222	80307422	+	1	NA	NA	NA	-85	NM_001145452	381112	Mm.360004	NM_001145452	ENSMUSG00000054901	Arhgef33	Gm941	Rho guanine nucleotide exchange factor (GEF) 33	protein-coding	0.010000	0.487562	50(TCATTTAAAAGC,-,0.00)
mm_6760.1	chr1	84071969	84072169	-	1	NA	NA	NA	146892	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.363184	
mm_153199.1	chr19	34601968	34602168	-	1	NA	NA	NA	-100	NM_001101605	667373	Mm.371956	NM_001101605	ENSMUSG00000079339	Ifit1bl1	Gm14446|Ifit1c|OTTMUSG00000016644	interferon induced protein with tetratricpeptide repeats 1B like 1	protein-coding	0.000000	0.402985	-35(CCTTATAAAAGA,+,0.00),-35(CCTTATAAAAGA,-,0.00)
mm_46740.1	chr5	110835952	110836152	-	1	NA	NA	NA	3725	NM_153571	100900	Mm.200231	NM_153571	ENSMUSG00000043510	Hscb	AI325508|AW049829|Hsc20	HscB iron-sulfur cluster co-chaperone	protein-coding	0.010000	0.447761	
mm_138949.1	chr17	44134639	44134839	+	1	NA	NA	NA	-28931	NM_199016	224794	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90|mKIAA0879	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	0.025000	0.472637	
mm_100559.1	chr11	120729577	120729777	+	1	NA	NA	NA	2344	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.040000	0.601990	
mm_66134.1	chr7	31076566	31076766	-	1	NA	NA	NA	31	NM_008557	17178	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	0.025000	0.621891	
mm_129817.1	chr15	83030852	83031052	-	1	NA	NA	NA	-1002	NM_001271413	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.010000	0.542289	14(GGCTTTAAGAGC,-,0.00),15(GCTTTAAGAGCT,+,0.00)
mm_33623.1	chr4	132731735	132731935	+	1	NA	NA	NA	711	NM_201368	381560	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	0.015000	0.512438	
mm_141869.1	chr17	34823344	34823544	-	1	NA	NA	NA	10	NM_011413	625018	Mm.439678	NM_011413		C4a	Slp|SlpA	complement component 4A (Rodgers blood group)	protein-coding	0.015000	0.587065	
mm_9676.1	chr1	178331367	178331567	-	1	NA	NA	NA	6317	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.010000	0.383085	
mm_49788.1	chr6	35178029	35178229	+	1	NA	NA	NA	513	NM_027513	70699	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	0.065000	0.636816	
mm_117736.1	chr13	95659549	95659749	-	1	NA	NA	NA	-37271	NM_010170	14064	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	0.020000	0.457711	
mm_42297.1	chr5	114450762	114450962	+	1	NA	NA	NA	6593	NM_023556	17855	Mm.28088	NM_023556	ENSMUSG00000041939	Mvk	2310010A05Rik|AI256848|AI414037|MK	mevalonate kinase	protein-coding	0.030000	0.611940	
mm_92780.1	chr10	81230699	81230899	-	1	NA	NA	NA	-20	NM_178662	16467	Mm.127681	NM_178662	ENSMUSG00000034958	Atcay	3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji	ataxia, cerebellar, Cayman type	protein-coding	0.025000	0.592040	
mm_4234.1	chr1	171370252	171370452	+	1	NA	NA	NA	179	NM_001122680	71740	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	0.055000	0.661692	
mm_72780.1	chr8	86745445	86745645	+	1	NA	NA	NA	-154	NR_027829	666945	Mm.391806	NR_027829		Gm10638	ENSMUSG00000074178	predicted gene 10638	ncRNA	0.145000	0.716418	
mm_46349.1	chr5	102502392	102502592	-	1	NA	NA	NA	21101	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.000000	0.422886	
mm_94297.1	chr11	4077251	4077451	+	1	NA	NA	NA	12498	NM_001029937	380683	Mm.296806	NM_001029937	ENSMUSG00000054986	Sec14l3	1110069O07Rik	SEC14-like lipid binding 3	protein-coding	0.005000	0.432836	
mm_15011.1	chr2	152573648	152573848	+	1	NA	NA	NA	1004	NM_207276	403172	Mm.84518	NM_207276	ENSMUSG00000056544	Defb21	4930525K10Rik|Gm121	defensin beta 21	protein-coding	0.020000	0.527363	
mm_82339.1	chr9	10904655	10904855	-	1	NA	NA	NA	20	NM_001170787	244682	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0.085000	0.681592	36(TGCCATTAAAGC,-,0.00)
mm_65498.1	chr7	25718919	25719119	-	1	NA	NA	NA	34	NM_028771	52132	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.070000	0.587065	
mm_104168.1	chr11	87404388	87404588	-	1	NA	NA	NA	7	NM_053269	114714	Mm.37376	NM_053269	ENSMUSG00000007646	Rad51c	R51H3|Rad51l2	RAD51 paralog C	protein-coding	0.115000	0.601990	
mm_39894.1	chr5	31195490	31195690	+	1	NA	NA	NA	2286	NM_153680	266781	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	0.015000	0.393035	47(CTTTATTTAAGG,-,0.00)
mm_4648.1	chr1	180330416	180330616	+	1	NA	NA	NA	33	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.050000	0.557214	
mm_18571.1	chr2	65529177	65529377	-	1	NA	NA	NA	38215	NM_018732	20269	Mm.330256	NM_018732	ENSMUSG00000057182	Scn3a	Gm1000|Nav1.3	sodium channel, voltage-gated, type III, alpha	protein-coding	0.015000	0.358209	
mm_26979.1	chr3	25536695	25536895	-	1	NA	NA	NA	616512	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.323383	
mm_165329.1	chr2	112587314	112587514	+	1	NA	NA	NA	27732	NM_001165935	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.025000	0.447761	
mm_146363.1	chr18	82584334	82584534	+	1	NA	NA	NA	29926	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.050000	0.567164	
mm_110665.1	chr12	61521712	61521912	-	1	NA	NA	NA	8	NR_045049	100504101	Mm.235026	NR_045049		Gm20063	-	predicted gene, 20063	ncRNA	0.035000	0.542289	
mm_108371.1	chr12	80827513	80827713	+	1	NA	NA	NA	37081	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.010000	0.507463	-35(CCTTTAAGACAT,+,0.00)
mm_148322.1	chr18	83828403	83828603	-	1	NA	NA	NA	258059	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.020000	0.502488	
mm_11565.1	chr2	32877863	32878063	+	1	NA	NA	NA	1829	NM_146119	227737	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.005000	0.542289	
mm_112651.1	chr13	16019827	16020027	+	1	NA	NA	NA	8076	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.000000	0.328358	
mm_64647.1	chr7	4062586	4062786	-	1	NA	NA	NA	518	NM_001302677	52855	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.005000	0.353234	
mm_10289.1	chr2	10370406	10370606	+	1	NA	NA	NA	55	NM_001198808	353282	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0.020000	0.532338	-29(GCCTCTAAAGGT,-,0.00)
mm_87071.1	chr10	29146620	29146820	+	1	NA	NA	NA	2724	NM_026138	67412	Mm.390264	NM_026138	ENSMUSG00000038916	Soga3	6330407J23Rik	SOGA family member 3	protein-coding	0.070000	0.641791	
mm_110758.1	chr12	70111481	70111681	-	1	NA	NA	NA	48	NR_104398	18080	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0.140000	0.711443	
mm_164227.1	chr15	86234618	86234818	+	1	NA	NA	NA	20259	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.025000	0.492537	
mm_69971.1	chr7	142376953	142377153	-	1	NA	NA	NA	-3307	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.010000	0.582090	
mm_112357.1	chr12	118966292	118966492	-	1	NA	NA	NA	29	NM_029961	77706	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0.005000	0.353234	
mm_12578.1	chr2	73274619	73274819	+	1	NA	NA	NA	2793	NM_001005343	381373	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0.100000	0.681592	
mm_71896.1	chr8	69996673	69996873	+	1	NA	NA	NA	-389	NM_145596	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.050000	0.656716	
mm_46637.1	chr5	108525328	108525528	-	1	NA	NA	NA	24599	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.035000	0.572139	
mm_94056.1	chr10	128211706	128211906	-	1	NA	NA	NA	-12	NM_025716	66701	Mm.29694	NM_025716	ENSMUSG00000051346	Spryd4	4633402N23Rik|AA114801	SPRY domain containing 4	protein-coding	0.090000	0.641791	
mm_8169.1	chr1	137325738	137325938	-	1	NA	NA	NA	-365390	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	0.010000	0.417910	18(TAGTATTTAAGG,-,0.00)
mm_164641.1	chr17	34804370	34804570	-	1	NA	NA	NA	-44	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.000000	0.532338	28(GGCTATAAAAGG,-,0.00)
mm_136716.1	chr17	7945511	7945711	+	1	NA	NA	NA	-3	NM_025789	66832	Mm.29830	NM_025789	ENSMUSG00000073471	Rsph3a	1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a	radial spoke 3A homolog (Chlamydomonas)	protein-coding	0.090000	0.686567	
mm_119430.1	chr14	46083925	46084125	+	1	NA	NA	NA	-2	NR_002875	218963	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	0.045000	0.442786	
mm_87514.1	chr10	52686745	52686945	+	1	NA	NA	NA	-3656	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding	0.010000	0.442786	
mm_170514.1	chr19	29367335	29367535	+	1	NA	NA	NA	-3	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.070000	0.606965	
mm_40842.1	chr5	73292707	73292907	+	1	NA	NA	NA	13	NM_001159888	68095	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	0.095000	0.626866	
mm_16153.1	chr2	172353193	172353393	+	1	NA	NA	NA	7716	NM_025912	67017	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	0.025000	0.487562	-24(CTGTCTATAAAG,-,0.00),-22(GTCTATAAAGCC,+,0.00),17(TCTTAAAAAGCA,+,0.00)
mm_36182.1	chr4	62208586	62208786	-	1	NA	NA	NA	-140	NM_001290350	22696	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0.085000	0.626866	
mm_4314.1	chr1	171845747	171845947	+	1	NA	NA	NA	6150	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.000000	0.402985	-62(GCTTATATGAGG,+,0.00)
mm_157153.1	chrX	9462785	9462985	-	1	NA	NA	NA	6439	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.398010	
mm_146356.1	chr18	82575504	82575704	+	1	NA	NA	NA	21096	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.035000	0.547264	
mm_109000.1	chr12	103232524	103232724	+	1	NA	NA	NA	9522	NM_133364	170952	Mm.217019	NM_133364	ENSMUSG00000041669	Prima1	B230212M13Rik|BB120497|PRiMA	proline rich membrane anchor 1	protein-coding	0.015000	0.502488	
mm_20436.1	chr2	129306544	129306744	-	1	NA	NA	NA	3328	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.020000	0.452736	
mm_66084.1	chr7	30957144	30957344	-	1	NA	NA	NA	-441	NM_011680	22282	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0.130000	0.686567	
mm_94548.1	chr11	11115687	11115887	+	1	NA	NA	NA	1771	NM_177033	319922	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0.140000	0.726368	
mm_125303.1	chr15	37233224	37233424	+	1	NA	NA	NA	288	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	0.050000	0.552239	
mm_172448.1	chr7	31280028	31280228	-	1	NA	NA	NA	11688	NM_020563	57426	Mm.6205	NM_020563	ENSMUSG00000062556	Scgb1b2	Abpa2|Abph|Apbh|LGP|Mja1l|Scgb1b1	secretoglobin, family 1B, member 2	protein-coding	0.005000	0.368159	
mm_40646.1	chr5	65013285	65013485	+	1	NA	NA	NA	43067	NR_030577	100124451		NR_030577	ENSMUSG00000077042	Mir574	Mirn574|mir-574|mmu-mir-574	microRNA 574	ncRNA	0.015000	0.532338	
mm_103375.1	chr11	75344222	75344422	-	1	NA	NA	NA	4061	NM_001164223	68275	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0.005000	0.388060	-7(TTTTTTAAAAGC,-,0.00)
mm_127532.1	chr15	102102120	102102320	+	1	NA	NA	NA	-768	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.015000	0.611940	
mm_96451.1	chr11	67559733	67559933	+	1	NA	NA	NA	-26667	NM_001109657	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.005000	0.442786	
mm_19777.1	chr2	106650263	106650463	-	1	NA	NA	NA	1	NR_137201	102640562	Mm.404175	NR_137201	ENSMUSG00000085218	BB218582	-	expressed sequence BB218582	ncRNA	0.035000	0.497512	
mm_4355.1	chr1	171917396	171917596	+	1	NA	NA	NA	34	NM_001347186	30925	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	0.010000	0.477612	
mm_8619.1	chr1	156037305	156037505	-	1	NA	NA	NA	-925	NM_001160018	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.020000	0.502488	
mm_53917.1	chr6	4047477	4047677	-	1	NA	NA	NA	7	NR_131108	78034	Mm.243851	NR_131108	ENSMUSG00000107681	4930528H21Rik	-	RIKEN cDNA 4930528H21 gene	ncRNA	0.005000	0.398010	
mm_127646.1	chr15	102485880	102486080	+	1	NA	NA	NA	15348	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.020000	0.552239	
mm_52357.1	chr6	112459655	112459855	+	1	NA	NA	NA	250	NM_007617	12391	Mm.3924	NM_007617	ENSMUSG00000062694	Cav3	AI385751|Cav-3|M-cav	caveolin 3	protein-coding	0.040000	0.582090	
mm_161721.1	chr17	27556553	27556753	+	1	NA	NA	NA	0	NM_001166476	111241	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1-rs1	ENSMUSG00000041059|Hmgi-rs1	high mobility group AT-hook I, related sequence 1	protein-coding	0.095000	0.671642	-34(CTCTTTTTAAGC,-,0.00),-32(CTTTTTAAGCTC,+,0.00)
mm_167806.1	chr9	123928718	123928918	-	1	NA	NA	NA	39874	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.020000	0.502488	
mm_130690.1	chr15	100681935	100682135	-	1	NA	NA	NA	5885	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.025000	0.522388	
mm_149260.1	chr19	10525495	10525695	+	1	NA	NA	NA	351	NM_172302	269061	Mm.490260	NM_172302	ENSMUSG00000034820	Cpsf7	5730453I16Rik|AL022757|C330017N18Rik	cleavage and polyadenylation specific factor 7	protein-coding	0.110000	0.756219	
mm_151368.1	chr19	55931372	55931572	+	1	NA	NA	NA	36151	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.030000	0.542289	
mm_60937.1	chr7	46861388	46861588	+	1	NA	NA	NA	225	NM_013580	16833	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	0.010000	0.572139	
mm_137821.1	chr17	30169741	30169941	+	1	NA	NA	NA	86694	NR_105839	102465223		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0.010000	0.268657	
mm_31860.1	chr4	79327564	79327764	+	1	NA	NA	NA	733617	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA	0.035000	0.497512	
mm_122688.1	chr14	52020547	52020747	-	1	NA	NA	NA	86	NM_001253696	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.025000	0.542289	
mm_31191.1	chr4	43578641	43578841	+	1	NA	NA	NA	6	NM_172866	242406	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	0.105000	0.766169	
mm_167051.1	chr7	83659322	83659522	-	1	NA	NA	NA	27405	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.015000	0.502488	
mm_24399.1	chr3	90293998	90294198	+	1	NA	NA	NA	23949	NR_105979	102465612		NR_105979	ENSMUSG00000099199	Mir7012	Gm27370|mmu-mir-7012	microRNA 7012	ncRNA	0.035000	0.507463	
mm_113104.1	chr13	24397317	24397517	+	1	NA	NA	NA	-17705	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.000000	0.422886	
mm_30315.1	chr3	151731373	151731573	-	1	NA	NA	NA	18486	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.000000	0.313433	62(CCCTTTAGAGTG,+,0.00)
mm_55293.1	chr6	54566404	54566604	-	1	NA	NA	NA	-122	NM_027268	69938	Mm.41557	NM_027268	ENSMUSG00000019124	Scrn1	2810019K23Rik|6330535A03Rik|AI852905|SES1|mKIAA0193	secernin 1	protein-coding	0.045000	0.606965	
mm_108551.1	chr12	84411062	84411262	+	1	NA	NA	NA	2094	NM_028377	72873	Mm.440428	NM_028377	ENSMUSG00000057265	Bbof1	2900006K08Rik|AI427784|Ccdc176	basal body orientation factor 1	protein-coding	0.010000	0.378109	
mm_147795.1	chr18	61652357	61652557	-	1	NA	NA	NA	-3199	NR_029601	387161		NR_029601	ENSMUSG00000065445	Mir143	Mirn143|mir-143|mmu-mir-143	microRNA 143	ncRNA	0.025000	0.592040	-34(TGCCATATAAGG,-,0.00),-32(CCATATAAGGGC,+,0.00)
mm_60869.1	chr7	45924122	45924322	+	1	NA	NA	NA	-2796	NM_010129	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.035000	0.592040	
mm_18422.1	chr2	60751567	60751767	-	1	NA	NA	NA	-29064	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.010000	0.427861	82(CACTTTTAAAGG,-,0.00),83(ACTTTTAAAGGT,+,0.00)
mm_88679.1	chr10	80053465	80053665	+	1	NA	NA	NA	77	NM_008162	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.100000	0.661692	
mm_138483.1	chr17	35195439	35195639	+	1	NA	NA	NA	567	NR_105939	102465588		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	0.040000	0.562189	
mm_149115.1	chr19	8966991	8967191	+	1	NA	NA	NA	50	NM_026007	67160	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	0.085000	0.631841	-7(CCTTTTATGCCG,+,0.00)
mm_85307.1	chr9	100987890	100988090	-	1	NA	NA	NA	46894	NM_001311149	66904	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0.005000	0.552239	
mm_64051.1	chr7	140835431	140835631	+	1	NA	NA	NA	35	NM_029821	76974	Mm.272359	NM_029821	ENSMUSG00000025481	Urah	1190003J15Rik|2810420C16Rik	urate (5-hydroxyiso-) hydrolase	protein-coding	0.035000	0.592040	
mm_107233.1	chr12	26478075	26478275	+	1	NA	NA	NA	8960	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.015000	0.462687	
mm_123690.1	chr14	69636927	69637127	-	1	NA	NA	NA	27551	NM_033325	94352	Mm.116714	NM_033325	ENSMUSG00000034205	Loxl2	1110004B06Rik|4930526G11Rik|9430067E15Rik	lysyl oxidase-like 2	protein-coding	0.005000	0.487562	
mm_28364.1	chr3	89870960	89871160	-	1	NA	NA	NA	39690	NM_172530	214547	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.020000	0.601990	
mm_85427.1	chr9	103499223	103499423	-	1	NA	NA	NA	-18995	NM_001002896	107993	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding	0.010000	0.621891	
mm_59546.1	chr7	27927495	27927695	+	1	NA	NA	NA	1835	NM_028538	73430	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	0.015000	0.547264	
mm_90928.1	chr10	12827199	12827399	-	1	NA	NA	NA	34436	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.010000	0.447761	
mm_74292.1	chr8	125960201	125960401	+	1	NA	NA	NA	-34801	NM_008430	16525	Mm.10800	NM_008430	ENSMUSG00000033998	Kcnk1	AI788889|TWIK-1	potassium channel, subfamily K, member 1	protein-coding	0.020000	0.562189	
mm_17416.1	chr2	27248241	27248441	-	1	NA	NA	NA	-1038	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.005000	0.547264	
mm_144847.1	chr18	36606081	36606281	+	1	NA	NA	NA	45578	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.005000	0.512438	
mm_32861.1	chr4	118410776	118410976	+	1	NA	NA	NA	1539	NM_020000	80509	Mm.259567	NM_020000	ENSMUSG00000006392	Med8	2210021A15Rik|AB041805|ARC32	mediator complex subunit 8	protein-coding	0.010000	0.422886	
mm_134784.1	chr16	23988469	23988669	-	1	NA	NA	NA	43	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.075000	0.552239	
mm_139857.1	chr17	69969222	69969422	+	1	NA	NA	NA	249	NM_001347411	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.130000	0.766169	
mm_83988.1	chr9	57434845	57435045	-	1	NA	NA	NA	5169	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.040000	0.587065	
mm_10973.1	chr2	25706888	25707088	+	1	NA	NA	NA	109	NM_023326	107771	Mm.330057	NM_023326	ENSMUSG00000049086	Bmyc	2900002K07Rik|AW060705|Mycb	brain expressed myelocytomatosis oncogene	protein-coding	0.105000	0.651741	
mm_37842.1	chr4	132078398	132078598	-	1	NA	NA	NA	-3185	NM_001128607	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.005000	0.492537	
mm_165671.1	chr3	89245145	89245345	-	1	NA	NA	NA	-46	NM_001039466	360213	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.050000	0.701493	
mm_144256.1	chr18	11034582	11034782	+	1	NA	NA	NA	-17828	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.010000	0.417910	
mm_88452.1	chr10	77553939	77554139	+	1	NA	NA	NA	23691	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.005000	0.537313	
mm_134320.1	chr16	16073296	16073496	-	1	NA	NA	NA	73455	NM_146068	224008	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0.015000	0.407960	
mm_136513.1	chr16	97170984	97171184	-	1	NA	NA	NA	-349	NM_031174	13508	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	Down syndrome cell adhesion molecule	protein-coding	0.045000	0.497512	
mm_152335.1	chr19	9978328	9978528	-	1	NA	NA	NA	-2172	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.010000	0.492537	
mm_88750.1	chr10	80299005	80299205	+	1	NA	NA	NA	-2715	NM_011789	23805	Mm.57247	NM_011789	ENSMUSG00000020135	Apc2	AI852447|APCL|R75424	adenomatosis polyposis coli 2	protein-coding	0.085000	0.696517	
mm_110668.1	chr12	64965417	64965617	-	1	NA	NA	NA	19	NM_025707	66689	Mm.248678	NM_025707	ENSMUSG00000020948	Klhl28	2810440N09Rik|4122402F11Rik|4931401E10Rik|Btbd5	kelch-like 28	protein-coding	0.045000	0.557214	
mm_2233.1	chr1	91044356	91044556	+	1	NA	NA	NA	-8988	NM_001310732	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.030000	0.552239	
mm_73899.1	chr8	119437047	119437247	+	1	NA	NA	NA	-15	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.035000	0.597015	
mm_7014.1	chr1	86503992	86504192	-	1	NA	NA	NA	-22644	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.095000	0.691542	
mm_91912.1	chr10	60294618	60294818	-	1	NA	NA	NA	10257	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.020000	0.606965	
mm_131850.1	chr16	23060351	23060551	+	1	NA	NA	NA	2151	NM_001102412	16644	Mm.2160	NM_023125	ENSMUSG00000022875	Kng1	Kng	kininogen 1	protein-coding	0.015000	0.557214	52(CTCTTTATAGGA,+,0.00),52(CTCTTTATAGGA,-,0.00)
mm_30020.1	chr3	135665273	135665473	-	1	NA	NA	NA	26174	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.015000	0.383085	-44(GCTTTTAAGGAT,+,0.00)
mm_86132.1	chr9	116366217	116366417	-	1	NA	NA	NA	-190954	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.035000	0.542289	
mm_98171.1	chr11	87751816	87752016	+	1	NA	NA	NA	-4948	NR_029555	387160		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.010000	0.537313	
mm_84402.1	chr9	65555038	65555238	-	1	NA	NA	NA	24949	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.010000	0.582090	
mm_74406.1	chr8	3467540	3467740	-	1	NA	NA	NA	8	NM_026951	69129	Mm.45279	NM_026951	ENSMUSG00000069633	Pex11g	1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma	peroxisomal biogenesis factor 11 gamma	protein-coding	0.085000	0.651741	
mm_98893.1	chr11	97844424	97844624	+	1	NA	NA	NA	3744	NM_001080935	68127	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0.010000	0.308458	
mm_101181.1	chr11	17000294	17000494	-	1	NA	NA	NA	8324	NM_019549	56193	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.000000	0.283582	
mm_172526.1	chr7	84834940	84835140	-	1	NA	NA	NA	-18531	NM_146415	258410	Mm.484702	NM_146415	ENSMUSG00000070460	Olfr291	MOR254-2	olfactory receptor 291	protein-coding	0.025000	0.512438	
mm_33329.1	chr4	129107683	129107883	+	1	NA	NA	NA	2235	NM_001290706	66260	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.020000	0.527363	
mm_5015.1	chr1	192854827	192855027	+	1	NA	NA	NA	-1	NR_131748	100503471	Mm.380305	NR_131748		Gm15867	OTTMUSG00000027054	predicted gene 15867	ncRNA	0.090000	0.676617	
mm_18431.1	chr2	60807319	60807519	-	1	NA	NA	NA	74019	NM_001141932	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.015000	0.522388	-5(GCCTTTAGAGTG,+,0.00)
mm_73905.1	chr8	119446987	119447187	+	1	NA	NA	NA	368	NM_054095	117148	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	0.180000	0.855721	
mm_171105.1	chr3	133544278	133544478	-	1	NA	NA	NA	12	NM_001346736	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.140000	0.686567	
mm_95947.1	chr11	58386720	58386920	+	1	NA	NA	NA	6174	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.025000	0.432836	
mm_88203.1	chr10	70169063	70169263	+	1	NA	NA	NA	-35501	NM_001304739	69563	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Mln	myoregulin	protein-coding	0.045000	0.502488	31(GTTTTTAAAGAA,+,0.00)
mm_96493.1	chr11	67922279	67922479	+	1	NA	NA	NA	-226	NM_173754	216835	Mm.158885	NM_173754	ENSMUSG00000020905	Usp43	-	ubiquitin specific peptidase 43	protein-coding	0.055000	0.611940	
mm_56892.1	chr6	119108911	119109111	-	1	NA	NA	NA	-516	NM_001256002	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.060000	0.567164	
mm_3387.1	chr1	140245928	140246128	+	1	NA	NA	NA	-229	NM_001081027	240776	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0.060000	0.651741	
mm_32523.1	chr4	108847761	108847961	+	1	NA	NA	NA	4	NM_029571	100087	Mm.440007	NM_029571	ENSMUSG00000073775	Kti12	1110001A12Rik|AI326810|AU014758	KTI12 homolog, chromatin associated	protein-coding	0.085000	0.587065	
mm_110560.1	chr12	55492496	55492696	-	1	NA	NA	NA	51	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.075000	0.666667	-35(GCGTTTATAGGG,-,0.00),-33(GTTTATAGGGCG,+,0.00)
mm_128974.1	chr15	74832367	74832567	-	1	NA	NA	NA	9176	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.010000	0.378109	
mm_116561.1	chr13	46736806	46737006	-	1	NA	NA	NA	-9057	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.015000	0.487562	
mm_151102.1	chr19	47857899	47858099	+	1	NA	NA	NA	3026	NM_010362	14873	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0.020000	0.482587	
mm_85961.1	chr9	112138972	112139172	-	1	NA	NA	NA	-20361	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.005000	0.487562	
mm_22369.1	chr2	181147275	181147475	-	1	NA	NA	NA	9640	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.020000	0.552239	
mm_56494.1	chr6	99204393	99204593	-	1	NA	NA	NA	62022	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.005000	0.447761	
mm_33774.1	chr4	134496877	134497077	+	1	NA	NA	NA	-64	NM_001285849	71904	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	0.085000	0.701493	
mm_47633.1	chr5	125300435	125300635	-	1	NA	NA	NA	40559	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.020000	0.552239	76(GCTTTTATGAAC,+,0.00)
mm_112382.1	chr12	119237978	119238178	-	1	NA	NA	NA	198	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.055000	0.597015	78(GCCTTAAGGGCC,+,0.00)
mm_109294.1	chr12	109559517	109559717	+	1	NA	NA	NA	-4075	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.020000	0.378109	
mm_87226.1	chr10	40444746	40444946	+	1	NA	NA	NA	95538	NM_001291816	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.020000	0.492537	
mm_30586.1	chr4	5644128	5644328	+	1	NA	NA	NA	49	NM_173426	242297	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0.115000	0.716418	
mm_52235.1	chr6	104492980	104493180	+	1	NA	NA	NA	36	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding	0.025000	0.472637	
mm_170209.1	chr17	70898102	70898302	-	1	NA	NA	NA	-44670	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.015000	0.383085	
mm_28241.1	chr3	88461111	88461311	-	1	NA	NA	NA	-29	NM_001163489	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.025000	0.616915	-87(GTCTCTTTAAGA,-,0.00),-85(CTCTTTAAGAGC,-,0.00),-84(TCTTTAAGAGCT,+,0.00)
mm_166817.1	chr7	17750449	17750649	+	1	NA	NA	NA	37297	NM_028480	73250	Mm.244138	NM_028480	ENSMUSG00000008789	Ceacam5	1600029H12Rik|Psg30	carcinoembryonic antigen-related cell adhesion molecule 5	protein-coding	0.005000	0.432836	
mm_148446.1	chr19	3972328	3972528	+	1	NA	NA	NA	100	NM_001177438	621603	Mm.34137	NM_001177438	ENSMUSG00000075296	Aldh3b2	AI848594|C130048D07Rik	aldehyde dehydrogenase 3 family, member B2	protein-coding	0.030000	0.592040	
mm_46021.1	chr5	90905153	90905353	-	1	NA	NA	NA	1354	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.020000	0.447761	
mm_99509.1	chr11	103101608	103101808	+	1	NA	NA	NA	20	NM_025988	67131	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	0.090000	0.661692	
mm_87722.1	chr10	60106211	60106411	+	1	NA	NA	NA	54	NM_052994	94214	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.060000	0.626866	
mm_119779.1	chr14	54179617	54179817	+	1	NA	NA	NA	74212	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.383085	
mm_114479.1	chr13	69141127	69141327	+	1	NA	NA	NA	-141686	NM_153534	210044	Mm.390617	NM_153534	ENSMUSG00000021536	Adcy2	mKIAA1060	adenylate cyclase 2	protein-coding	0.010000	0.422886	
mm_19698.1	chr2	103761068	103761268	-	1	NA	NA	NA	82	NM_153126	98956	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.055000	0.587065	
mm_171868.1	chr5	24974324	24974524	-	1	NA	NA	NA	21329	NM_001310480	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.015000	0.452736	-78(CCTTTTCTGGGG,+,0.00)
mm_167977.1	chrX	159456318	159456518	+	1	NA	NA	NA	-2707	NM_001313752	78283	Mm.160079	NM_001081124	ENSMUSG00000041020	Map7d2	1600028E09Rik|2900002G04Rik|5330432J06Rik|C030036K04Rik|Mtap7d2	MAP7 domain containing 2	protein-coding	0.000000	0.313433	43(GTTTTTAGAGGC,+,0.00)
mm_71372.1	chr8	45763864	45764064	+	1	NA	NA	NA	55333	NR_045739	319940	Mm.441720	NR_045739	ENSMUSG00000085440	Sorbs2os	D330022K07Rik	sorbin and SH3 domain containing 2, opposite strand	ncRNA	0.025000	0.606965	
mm_33663.1	chr4	133174431	133174631	+	1	NA	NA	NA	-21124	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.005000	0.427861	
mm_151.1	chr1	11414018	11414218	+	1	NA	NA	NA	13	NM_001160371	320492	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding	0.105000	0.676617	-68(GGCTTTTTGAGC,-,0.00)
mm_110781.1	chr12	71015450	71015650	-	1	NA	NA	NA	273	NR_045056	73204	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0.080000	0.631841	
mm_166857.1	chr7	20782073	20782273	+	1	NA	NA	NA	-5112	NM_001166716	436135	Mm.480278	NM_001166716	ENSMUSG00000091638	Vmn1r113	EG436135|Gm5748	vomeronasal 1 receptor 113	protein-coding	0.010000	0.487562	
mm_26946.1	chr3	20266414	20266614	-	1	NA	NA	NA	9219	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.015000	0.447761	
mm_159076.1	chr2	25863750	25863950	+	1	NA	NA	NA	55	NM_001145403	227632	Mm.119462	NM_175462	ENSMUSG00000058740	Kcnt1	C030030G16Rik|Slack|Slo2.2|slo2	potassium channel, subfamily T, member 1	protein-coding	0.130000	0.796020	
mm_84656.1	chr9	71631038	71631238	-	1	NA	NA	NA	-38778	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	0.005000	0.547264	
mm_28630.1	chr3	95142254	95142454	-	1	NA	NA	NA	6	NM_027206	69769	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	0.020000	0.577114	
mm_166296.1	chr5	104113789	104113989	-	1	NA	NA	NA	199	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding	0.015000	0.452736	
mm_88339.1	chr10	75589277	75589477	+	1	NA	NA	NA	-4	NM_011820	23887	Mm.257927	NM_011820	ENSMUSG00000006344	Ggt5	AI551243|GGL|GGT-REL|Ggtla1	gamma-glutamyltransferase 5	protein-coding	0.010000	0.552239	
mm_124789.1	chr15	8109239	8109439	+	1	NA	NA	NA	26	NM_133227	170762	Mm.295168	NM_133227	ENSMUSG00000022142	Nup155	D930027M19Rik|mKIAA0791	nucleoporin 155	protein-coding	0.105000	0.582090	75(GTTTCTATAAGG,-,0.00)
mm_31502.1	chr4	53440345	53440545	+	1	NA	NA	NA	32	NM_133891	100434	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.130000	0.805970	
mm_30823.1	chr4	21873681	21873881	+	1	NA	NA	NA	-5894	NM_172687	230027	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	0.045000	0.567164	-31(GAGCATAAAGGG,-,0.00)
mm_39785.1	chr5	30232548	30232748	+	1	NA	NA	NA	67	NR_137634	28042	Mm.168854	NM_027652	ENSMUSG00000075703	Selenoi	4933402G07Rik|AI448296|AI452230|C79563|D5Wsu178e|Ept1|SELI|mKIAA1724	selenoprotein I	protein-coding	0.115000	0.671642	
mm_16044.1	chr2	167721614	167721814	+	1	NA	NA	NA	30537	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.005000	0.621891	
mm_37788.1	chr4	130307414	130307614	-	1	NA	NA	NA	-1264	NM_010174	14077	Mm.388886	NM_010174	ENSMUSG00000028773	Fabp3	Fabph-1|Fabph-4|Fabph1|Fabph4|H-FABP|Mdgi	fatty acid binding protein 3, muscle and heart	protein-coding	0.010000	0.492537	
mm_71411.1	chr8	46471845	46472045	+	1	NA	NA	NA	908	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.025000	0.437811	-54(GGACTTAAAAGA,-,0.00)
mm_159311.1	chr2	181493083	181493283	+	1	NA	NA	NA	-23	NM_183181	241850	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	0.015000	0.587065	
mm_26367.1	chr3	142560253	142560453	+	1	NA	NA	NA	-143	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.015000	0.402985	
mm_87677.1	chr10	59136905	59137105	+	1	NA	NA	NA	84842	NM_001024911	103080	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	0.000000	0.422886	
mm_5343.1	chr1	24595388	24595588	-	1	NA	NA	NA	-8051	NM_007733	12823	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.030000	0.587065	-40(CCTTATAGAGAC,+,0.00)
mm_77258.1	chr8	115706906	115707106	-	1	NA	NA	NA	-112	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.080000	0.721393	
mm_90309.1	chr10	126997418	126997618	+	1	NA	NA	NA	-922	NR_030259	723882		NR_030259	ENSMUSG00000072837	Mir546	Mirn546|mmu-mir-546	microRNA 546	ncRNA	0.030000	0.532338	
mm_114450.1	chr13	66933280	66933480	+	1	NA	NA	NA	-308	NM_025547	66410	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	0.100000	0.736318	
mm_97877.1	chr11	83191249	83191449	+	1	NA	NA	NA	19	NM_011409	20557	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	0.030000	0.552239	
mm_25985.1	chr3	133534275	133534475	+	1	NA	NA	NA	10015	NM_001346736	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.010000	0.472637	
mm_125657.1	chr15	63718257	63718457	+	1	NA	NA	NA	90382	NM_031378	83492	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	0.035000	0.532338	
mm_143931.1	chr17	86075233	86075433	-	1	NA	NA	NA	69842	NM_030133	78586	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	0.015000	0.388060	
mm_14512.1	chr2	132281076	132281276	+	1	NA	NA	NA	-4763	NM_001291039	110911	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.020000	0.487562	
mm_168302.1	chr11	106724311	106724511	-	1	NA	NA	NA	-9130	NM_001305157	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.030000	0.572139	
mm_90182.1	chr10	119992837	119993037	+	1	NA	NA	NA	15	NR_102387	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding	0.000000	0.512438	
mm_43394.1	chr5	135778537	135778737	+	1	NA	NA	NA	-12	NM_008617	17448	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	0.090000	0.631841	
mm_29987.1	chr3	135428375	135428575	-	1	NA	NA	NA	-5042	NM_025902	67006	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0.005000	0.422886	-35(CCCTATATATAG,-,0.00),7(GACCATAAAGAG,-,0.00)
mm_141604.1	chr17	32788149	32788349	-	1	NA	NA	NA	38	NM_172458	208292	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	0.035000	0.537313	
mm_30304.1	chr3	149326667	149326867	-	1	NA	NA	NA	52030	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.020000	0.432836	
mm_32119.1	chr4	99031102	99031302	+	1	NA	NA	NA	248	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.015000	0.363184	44(CTTTTTATGACC,+,0.00)
mm_94542.1	chr11	9191695	9191895	+	1	NA	NA	NA	-147	NM_178259	268379	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.010000	0.487562	-69(TCTCTTAGAGCC,+,0.00)
mm_96226.1	chr11	62512058	62512258	+	1	NA	NA	NA	27103	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.035000	0.601990	
mm_19054.1	chr2	77280460	77280660	-	1	NA	NA	NA	32	NM_175465	228071	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.185000	0.860697	
mm_78466.1	chr9	32594646	32594846	+	1	NA	NA	NA	-53294	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.015000	0.527363	13(AGCTATTAAAGA,-,0.00)
mm_135995.1	chr16	75284742	75284942	-	1	NA	NA	NA	301219	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.000000	0.363184	
mm_24642.1	chr3	94377392	94377592	+	1	NA	NA	NA	60	NR_121656	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.005000	0.621891	
mm_14043.1	chr2	122264658	122264858	+	1	NA	NA	NA	29919	NM_146126	20322	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	0.005000	0.467662	
mm_145583.1	chr18	60984294	60984494	+	1	NA	NA	NA	20840	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.060000	0.636816	
mm_117466.1	chr13	76017455	76017655	-	1	NA	NA	NA	1007	NM_178916	218341	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	0.000000	0.432836	-76(GAGCCTAAAAGC,-,0.00)
mm_104835.1	chr11	99154928	99155128	-	1	NA	NA	NA	49	NM_001301713	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.000000	0.512438	-82(CAACTTAAAAGG,-,0.00)
mm_120599.1	chr14	70077927	70078127	+	1	NA	NA	NA	232	NM_001289927	13655	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.070000	0.666667	
mm_47783.1	chr5	131993185	131993385	-	1	NA	NA	NA	113016	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.015000	0.402985	
mm_100308.1	chr11	117976211	117976411	+	1	NA	NA	NA	-6945	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.020000	0.621891	
mm_169645.1	chr15	51607785	51607985	+	1	NA	NA	NA	-212275	NR_045092	100502643	Mm.131987	NR_045092		Gm19303	-	predicted gene, 19303	ncRNA	0.030000	0.547264	
mm_59624.1	chr7	28154546	28154746	+	1	NA	NA	NA	-15102	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.020000	0.512438	
mm_130486.1	chr15	98763063	98763263	-	1	NA	NA	NA	-45	NM_007478	11842	Mm.221298	NM_007478	ENSMUSG00000051853	Arf3	5430400P17Rik|AI854770	ADP-ribosylation factor 3	protein-coding	0.135000	0.721393	
mm_164465.1	chr16	59557397	59557597	+	1	NA	NA	NA	-1745	NM_174848	224273	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	0.020000	0.517413	
mm_130479.1	chr15	98740069	98740269	-	1	NA	NA	NA	-11971	NM_024169	66120	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.010000	0.522388	
mm_21203.1	chr2	155582562	155582762	-	1	NA	NA	NA	10148	NM_001291111	14854	Mm.252316	NM_008180	ENSMUSG00000027610	Gss	AI314904|GS-A/GS-B|GSH-S	glutathione synthetase	protein-coding	0.010000	0.477612	
mm_159673.1	chr4	154882158	154882358	+	1	NA	NA	NA	12673	NM_013783	27390	Mm.116944	NM_013783	ENSMUSG00000058183	Mmel1	Mell1|NEP2|NEPII|Nl1|SEP	membrane metallo-endopeptidase-like 1	protein-coding	0.030000	0.626866	
mm_167092.1	chr7	106263967	106264167	+	1	NA	NA	NA	-48727	NM_029000	74558	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0.030000	0.482587	-28(GGTTATAAAAGG,-,0.00)
mm_119829.1	chr14	54360739	54360939	+	1	NA	NA	NA	-2	NM_026936	69089	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	0.090000	0.587065	
mm_107661.1	chr12	52818419	52818619	+	1	NA	NA	NA	119136	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.015000	0.427861	
mm_20362.1	chr2	128306499	128306699	-	1	NA	NA	NA	122752	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.000000	0.482587	
mm_50793.1	chr6	54039985	54040185	+	1	NA	NA	NA	153	NM_001163640	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.135000	0.731343	
mm_136032.1	chr16	77329438	77329638	-	1	NA	NA	NA	210	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.030000	0.532338	
mm_20028.1	chr2	119477561	119477761	-	1	NA	NA	NA	-32	NM_026574	68142	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	0.105000	0.721393	
mm_143004.1	chr17	56425058	56425258	-	1	NA	NA	NA	-6249	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0.080000	0.721393	
mm_165642.1	chr3	75890534	75890734	-	1	NA	NA	NA	66315	NM_175193	73124	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.030000	0.492537	
mm_29626.1	chr3	121547933	121548133	-	1	NA	NA	NA	-15689	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.030000	0.502488	
mm_82858.1	chr9	31464146	31464346	-	1	NA	NA	NA	-8	NM_144936	235135	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	0.060000	0.656716	
mm_123395.1	chr14	63417032	63417232	-	1	NA	NA	NA	55	NM_007549	12143	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.010000	0.542289	
mm_154030.1	chr19	53441375	53441575	-	1	NA	NA	NA	23321	NR_028427	381232	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|ENSMUSG00000074788|Gm10758	myocardial infarction associated transcript 1	ncRNA	0.015000	0.497512	
mm_160812.1	chr11	21135486	21135686	+	1	NA	NA	NA	44262	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.015000	0.393035	
mm_62610.1	chr7	107166889	107167089	+	1	NA	NA	NA	-1	NM_001002894	76858	Mm.35644	NM_001002894	ENSMUSG00000016626	Nlrp14	4921520L01Rik|GC-LRR|Nalp-iota|Nalp14|Nalp14l	NLR family, pyrin domain containing 14	protein-coding	0.035000	0.527363	-32(GGTCTTAAAAGC,-,0.00)
mm_11540.1	chr2	32646436	32646636	+	1	NA	NA	NA	-59	NM_007932	13805	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	0.025000	0.666667	
mm_24638.1	chr3	94372787	94372987	+	1	NA	NA	NA	93	NM_011281	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.020000	0.671642	
mm_89688.1	chr10	97565488	97565688	+	1	NA	NA	NA	87	NM_008524	17022	Mm.18888	NM_008524	ENSMUSG00000036446	Lum	Ldc|SLRR2D	lumican	protein-coding	0.020000	0.497512	
mm_61298.1	chr7	67679012	67679212	+	1	NA	NA	NA	31702	NM_025905	67009	Mm.249356	NM_025905	ENSMUSG00000030555	Ttc23	1600012K10Rik	tetratricopeptide repeat domain 23	protein-coding	0.050000	0.547264	
mm_44092.1	chr5	149245854	149246054	+	1	NA	NA	NA	-19050	NM_001308462	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.035000	0.557214	
mm_133222.1	chr16	76341913	76342113	+	1	NA	NA	NA	31036	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.015000	0.497512	-34(CTCTATAAAAGC,-,0.00)
mm_43372.1	chr5	135632612	135632812	+	1	NA	NA	NA	58	NM_146002	215160	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0.095000	0.706468	
mm_17082.1	chr2	22950598	22950798	-	1	NA	NA	NA	55176	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.000000	0.288557	-16(GGTTTTAAAAAC,-,0.00)
mm_102637.1	chr11	62550906	62551106	-	1	NA	NA	NA	-165	NM_011664	22187	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.115000	0.611940	
mm_127403.1	chr15	101224230	101224430	+	1	NA	NA	NA	123	NM_019518	56149	Mm.276573	NM_019518	ENSMUSG00000000531	Grasp	tamalin	GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein	protein-coding	0.125000	0.736318	
mm_107399.1	chr12	33333143	33333343	+	1	NA	NA	NA	30728	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.005000	0.512438	
mm_45122.1	chr5	45857392	45857592	-	1	NA	NA	NA	48	NM_001163073	209707	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	0.155000	0.741294	
mm_70521.1	chr8	12949386	12949586	+	1	NA	NA	NA	68	NM_001159485	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.020000	0.577114	
mm_136865.1	chr17	12866931	12867131	+	1	NA	NA	NA	1112	NM_008552	17171	Mm.425994	NM_008552	ENSMUSG00000068037	Mas1	Mas-1|Mgra	MAS1 oncogene	protein-coding	0.030000	0.577114	
mm_70615.1	chr8	13435386	13435586	+	1	NA	NA	NA	27	NM_001143672	272465	Mm.250502	NM_001143671	ENSMUSG00000038457	Tmem255b	Fam70b|Gm687	transmembrane protein 255B	protein-coding	0.025000	0.587065	
mm_105874.1	chr11	114923492	114923692	-	1	NA	NA	NA	10794	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.000000	0.407960	
mm_106118.1	chr11	116359221	116359421	-	1	NA	NA	NA	-23967	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.025000	0.492537	
mm_155159.1	chrX	52987977	52988177	+	1	NA	NA	NA	-1	NM_013556	15452	Mm.299381	NM_013556	ENSMUSG00000025630	Hprt	C81579|HPGRT|Hprt1	hypoxanthine guanine phosphoribosyl transferase	protein-coding	0.120000	0.716418	
mm_153469.1	chr19	41264254	41264454	-	1	NA	NA	NA	-350	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.050000	0.462687	
mm_115111.1	chr13	103919345	103919545	+	1	NA	NA	NA	1141	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.035000	0.442786	
mm_101928.1	chr11	50202843	50203043	-	1	NA	NA	NA	7877	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.015000	0.537313	
mm_103833.1	chr11	83020256	83020456	-	1	NA	NA	NA	366	NM_001167743	276950	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0.020000	0.388060	
mm_142287.1	chr17	40242187	40242387	-	1	NA	NA	NA	-29	NM_009639	11572	Mm.14138	NM_009639	ENSMUSG00000025433	Crisp3	Aeg2|CRISP-3|CRS3|SGP28	cysteine-rich secretory protein 3	protein-coding	0.000000	0.402985	-35(GAGTATAAATAG,-,0.00)
mm_153600.1	chr19	43879620	43879820	-	1	NA	NA	NA	48	NM_001306088	71972	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.085000	0.671642	
mm_134305.1	chr16	15736578	15736778	-	1	NA	NA	NA	98812	NM_011159	19090	Mm.71	NM_011159	ENSMUSG00000022672	Prkdc	AI326420|AU019811|DNA-PKcs|DNAPDcs|DNAPK|DNPK1|DOXNPH|HYRC1|XRCC7|dxnph|p460|scid|slip	protein kinase, DNA activated, catalytic polypeptide	protein-coding	0.025000	0.378109	
mm_108375.1	chr12	80853929	80854129	+	1	NA	NA	NA	63497	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.005000	0.442786	
mm_150751.1	chr19	43794353	43794553	+	1	NA	NA	NA	12145	NM_013806	12780	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0.010000	0.477612	
mm_109697.1	chr12	113152686	113152886	+	1	NA	NA	NA	774	NM_007763	12925	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	0.005000	0.532338	
mm_148122.1	chr18	75342519	75342719	-	1	NA	NA	NA	-24746	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.085000	0.676617	
mm_69783.1	chr7	141093988	141094188	-	1	NA	NA	NA	6458	NM_023059	24058	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0.010000	0.552239	
mm_167999.1	chrX	170018156	170018356	+	1	NA	NA	NA	-39339	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.020000	0.323383	
mm_114661.1	chr13	78120939	78121139	+	1	NA	NA	NA	75410	NM_001347538	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.005000	0.383085	
mm_27326.1	chr3	50368187	50368387	-	1	NA	NA	NA	75326	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.268657	
mm_156470.1	chrX	143518612	143518812	+	1	NA	NA	NA	121	NM_001195048	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding	0.040000	0.592040	
mm_29138.1	chr3	105801250	105801450	-	1	NA	NA	NA	31	NM_145541	109905	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein-1a	protein-coding	0.140000	0.766169	-94(CCTTAAATAGAT,+,0.00)
mm_50933.1	chr6	57702452	57702652	+	1	NA	NA	NA	97	NM_133737	71835	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.035000	0.527363	
mm_165339.1	chr2	117989377	117989577	+	1	NA	NA	NA	121725	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA	0.020000	0.492537	
mm_127726.1	chr15	103240348	103240548	+	1	NA	NA	NA	-6	NR_002883	434858	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.080000	0.537313	-49(CGGGATAAAAGG,-,0.00)
mm_74687.1	chr8	14989573	14989773	-	1	NA	NA	NA	-21352	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.030000	0.577114	
mm_88362.1	chr10	75937068	75937268	+	1	NA	NA	NA	1595	NM_175329	103172	Mm.333849	NM_175329	ENSMUSG00000049422	Chchd10	1620401E04Rik|AI267078|Ndg2	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding	0.015000	0.507463	
mm_124056.1	chr14	77875001	77875201	-	1	NA	NA	NA	-184	NM_025384	66148	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	0.015000	0.497512	
mm_109945.1	chr12	11326352	11326552	-	1	NA	NA	NA	26565	NR_106136	102465775		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.015000	0.437811	
mm_18454.1	chr2	60963053	60963253	-	1	NA	NA	NA	51	NM_020296	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.090000	0.696517	
mm_66705.1	chr7	45921187	45921387	-	1	NA	NA	NA	139	NM_010129	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.040000	0.567164	-82(GGGTATTAAAGG,-,0.00)
mm_144175.1	chr18	6733857	6734057	+	1	NA	NA	NA	-31210	NM_181070	19330	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.015000	0.447761	
mm_140248.1	chr17	84181909	84182109	+	1	NA	NA	NA	5938	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.030000	0.562189	
mm_85957.1	chr9	112124318	112124518	-	1	NA	NA	NA	-5707	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.015000	0.522388	
mm_78262.1	chr9	21927591	21927791	+	1	NA	NA	NA	-156	NM_001253870	235043	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0.030000	0.552239	
mm_32890.1	chr4	118964096	118964296	+	1	NA	NA	NA	2229	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.010000	0.497512	
mm_79054.1	chr9	46229848	46230048	+	1	NA	NA	NA	1318	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.030000	0.547264	
mm_83189.1	chr9	41004605	41004805	-	1	NA	NA	NA	-77	NM_019465	54698	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	0.000000	0.537313	
mm_67773.1	chr7	97081404	97081604	-	1	NA	NA	NA	-247	NM_001162477	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.075000	0.691542	
mm_138335.1	chr17	34898196	34898396	+	1	NA	NA	NA	-196	NM_001286575	110147	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0.055000	0.651741	
mm_71451.1	chr8	46521562	46521762	+	1	NA	NA	NA	-30407	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.005000	0.368159	
mm_116971.1	chr13	56178704	56178904	-	1	NA	NA	NA	81	NM_145976	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.025000	0.507463	
mm_36151.1	chr4	59537981	59538181	-	1	NA	NA	NA	11283	NM_178164	230257	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0.000000	0.393035	
mm_106572.1	chr11	120661092	120661292	-	1	NA	NA	NA	-355	NM_175263	77583	Mm.32839	NM_175263	ENSMUSG00000042988	Notum	5730593N15Rik	notum pectinacetylesterase homolog (Drosophila)	protein-coding	0.120000	0.701493	
mm_89868.1	chr10	108230447	108230647	+	1	NA	NA	NA	68147	NM_027892	17931	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.065000	0.492537	
mm_142722.1	chr17	48146164	48146364	-	1	NA	NA	NA	43	NM_001177897	328829	Mm.466999	NM_177824	ENSMUSG00000073386	9830107B12Rik	Trem5	RIKEN cDNA 9830107B12 gene	protein-coding	0.010000	0.497512	
mm_88535.1	chr10	78425610	78425810	+	1	NA	NA	NA	40	NM_007793	13014	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	0.075000	0.636816	
mm_21407.1	chr2	158091693	158091893	-	1	NA	NA	NA	4	NR_040609	72340	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0.005000	0.457711	
mm_135467.1	chr16	45844132	45844332	-	1	NA	NA	NA	146	NM_153412	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology like domain, family B, member 2	protein-coding	0.050000	0.646766	
mm_121447.1	chr14	120430580	120430780	+	1	NA	NA	NA	-47781	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.010000	0.298507	
mm_35996.1	chr4	55651111	55651311	-	1	NA	NA	NA	-118736	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.090000	0.656716	-35(GCATATTTAAGG,-,0.00)
mm_114521.1	chr13	73328397	73328597	+	1	NA	NA	NA	-15	NM_010888	407785	Mm.29897	NM_010888	ENSMUSG00000021606	Ndufs6	BC059730|IP13	NADH dehydrogenase (ubiquinone) Fe-S protein 6	protein-coding	0.090000	0.661692	
mm_49798.1	chr6	35411875	35412075	+	1	NA	NA	NA	81129	NR_040526	73409	Mm.69443	NR_040526	ENSMUSG00000107341	1700065J11Rik	-	RIKEN cDNA 1700065J11 gene	ncRNA	0.025000	0.497512	
mm_57438.1	chr6	124920006	124920206	-	1	NA	NA	NA	-2160	NM_026988	69202	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	0.015000	0.577114	
mm_84535.1	chr9	67250796	67250996	-	1	NA	NA	NA	-14170	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	0.010000	0.547264	
mm_119139.1	chr14	31209337	31209537	+	1	NA	NA	NA	1125	NM_009393	21924	Mm.439921	NM_009393	ENSMUSG00000091898	Tnnc1	AI874626|TnC|cTnC|cTnI|tncc	troponin C, cardiac/slow skeletal	protein-coding	0.010000	0.497512	-33(CCCTTTAAAAAT,-,0.00)
mm_165783.1	chr3	131127472	131127672	+	1	NA	NA	NA	14781	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.005000	0.393035	
mm_25778.1	chr3	126597008	126597208	+	1	NA	NA	NA	157	NM_023813	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.120000	0.751244	
mm_167167.1	chr7	136304997	136305197	+	1	NA	NA	NA	36773	NR_102277	77383	Mm.227745	NR_102277	ENSMUSG00000110027	C030029H02Rik	-	RIKEN cDNA C030029H02 gene	ncRNA	0.010000	0.402985	
mm_42997.1	chr5	123394704	123394904	+	1	NA	NA	NA	6	NM_177582	208104	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.125000	0.706468	-82(ACCTTTAAGAGG,-,0.00),-81(CCTTTAAGAGGC,+,0.00)
mm_68882.1	chr7	126447799	126447999	-	1	NA	NA	NA	15174	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.020000	0.577114	
mm_116473.1	chr13	43481385	43481585	-	1	NA	NA	NA	-512	NM_019930	56705	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.185000	0.805970	
mm_96339.1	chr11	66380293	66380493	+	1	NA	NA	NA	145733	NM_001034874	380702	Mm.351764	NM_001034874	ENSMUSG00000053930	Shisa6	Gm879|ckamp52	shisa family member 6	protein-coding	0.015000	0.457711	
mm_146720.1	chr18	15064050	15064250	-	1	NA	NA	NA	-568	NM_001142731	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.085000	0.736318	
mm_98069.1	chr11	85889741	85889941	+	1	NA	NA	NA	-222	NM_011536	21387	Mm.275336	NM_011536	ENSMUSG00000000094	Tbx4	3930401C23	T-box 4	protein-coding	0.025000	0.592040	
mm_154805.1	chrX	13422262	13422462	+	1	NA	NA	NA	-45310	NM_173415	236690	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	0.015000	0.442786	
mm_154763.1	chrX	12079165	12079365	+	1	NA	NA	NA	1288	NM_175045	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.120000	0.681592	
mm_3438.1	chr1	150102079	150102279	+	1	NA	NA	NA	2148	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.432836	7(ACCTAGAAAAGG,-,0.00)
mm_111052.1	chr12	80109686	80109886	-	1	NA	NA	NA	3227	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.035000	0.611940	
mm_73744.1	chr8	114289277	114289477	+	1	NA	NA	NA	62101	NR_045831	71122	Mm.437539	NR_045831		4933408N05Rik	-	RIKEN cDNA 4933408N05 gene	ncRNA	0.035000	0.532338	
mm_90391.1	chr10	127321914	127322114	+	1	NA	NA	NA	50	NM_001285785	216445	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.015000	0.532338	
mm_55179.1	chr6	52013984	52014184	-	1	NA	NA	NA	-1535	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.005000	0.557214	-40(CACTATAAAAGG,-,0.00)
mm_74416.1	chr8	3625109	3625309	-	1	NA	NA	NA	73	NM_008790	18545	Mm.440882	NM_008790	ENSMUSG00000004630	Pcp2	L7|Pcp-2	Purkinje cell protein 2 (L7)	protein-coding	0.000000	0.497512	
mm_137228.1	chr17	24351861	24352061	+	1	NA	NA	NA	-62	NM_013855	27410	Mm.239470	NM_013855	ENSMUSG00000024130	Abca3	1810036E22Rik|ABC-C|Abc3	ATP-binding cassette, sub-family A (ABC1), member 3	protein-coding	0.105000	0.711443	
mm_68444.1	chr7	109986228	109986428	-	1	NA	NA	NA	-98	NM_153525	233724	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	0.100000	0.676617	
mm_6013.1	chr1	59013990	59014190	-	1	NA	NA	NA	40519	NM_172656	227154	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	0.005000	0.313433	
mm_118801.1	chr14	24622055	24622255	+	1	NA	NA	NA	131474	NM_011297	20088	Mm.16775	NM_011297	ENSMUSG00000025290	Rps24	-	ribosomal protein S24	protein-coding	0.005000	0.467662	
mm_74773.1	chr8	21703546	21703746	-	1	NA	NA	NA	1	NM_001007582	382000	Mm.14269	NM_001007582	ENSMUSG00000058618	AY761184	CRS1C-3|CRS1C-6	cDNA sequence AY761184	protein-coding	0.000000	0.532338	-33(CCCTATAAATGC,+,0.00),-33(CCCTATAAATGC,-,0.00)
mm_58748.1	chr7	13285260	13285460	+	1	NA	NA	NA	6095	NM_001083188	16881	Mm.288179	NM_010715	ENSMUSG00000056394	Lig1	AL033288|LigI	ligase I, DNA, ATP-dependent	protein-coding	0.015000	0.497512	
mm_48946.1	chr6	4539566	4539766	+	1	NA	NA	NA	34048	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.035000	0.502488	
mm_61734.1	chr7	81932785	81932985	+	1	NA	NA	NA	1574	NM_013886	29877	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfrp3	2700022B06Rik|HRP-3	hepatoma-derived growth factor, related protein 3	protein-coding	0.010000	0.457711	
mm_1147.1	chr1	60751618	60751818	+	1	NA	NA	NA	5330	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.010000	0.343284	
mm_161915.1	chr18	67464744	67464944	+	1	NA	NA	NA	-5	NM_144867	225655	Mm.221420	NM_144867	ENSMUSG00000024530	Slmo1	A230074A19Rik|BC019561|Prelid3a	slowmo homolog 1 (Drosophila)	protein-coding	0.150000	0.746269	
mm_108445.1	chr12	82450497	82450697	+	1	NA	NA	NA	139248	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.000000	0.537313	
mm_60414.1	chr7	44476073	44476273	+	1	NA	NA	NA	5826	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.497512	
mm_117713.1	chr13	95250200	95250400	-	1	NA	NA	NA	4	NM_172263	218461	Mm.100167	NM_172263	ENSMUSG00000021684	Pde8b	B230331L10Rik|C030047E14Rik	phosphodiesterase 8B	protein-coding	0.040000	0.616915	
mm_173220.1	chrX	74622180	74622380	-	1	NA	NA	NA	23355	NM_001099302	434797	Mm.391298	NM_001099302	ENSMUSG00000079534	Gm5640	EG434797	predicted gene 5640	protein-coding	0.040000	0.497512	
mm_140054.1	chr17	74556684	74556884	+	1	NA	NA	NA	28489	NM_007566	12211	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.000000	0.313433	
mm_166257.1	chr5	87672074	87672274	+	1	NA	NA	NA	5966	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.343284	
mm_25836.1	chr3	129209908	129210108	+	1	NA	NA	NA	-3924	NM_001042502	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.010000	0.487562	-62(CCCTTTATGACC,+,0.00)
mm_110704.1	chr12	69318476	69318676	-	1	NA	NA	NA	21895	NM_027117	69554	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0.000000	0.477612	
mm_137018.1	chr17	17838316	17838516	+	1	NA	NA	NA	7441	NM_001162909	75202	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0.070000	0.631841	
mm_89556.1	chr10	95117794	95117994	+	1	NA	NA	NA	27931	NR_131146	628062		NR_131146		Gm29684	-	predicted gene, 29684	ncRNA	0.005000	0.497512	
mm_97592.1	chr11	78947745	78947945	+	1	NA	NA	NA	22554	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.005000	0.497512	
mm_16902.1	chr2	13424658	13424858	-	1	NA	NA	NA	67118	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.020000	0.398010	
mm_56827.1	chr6	117173638	117173838	-	1	NA	NA	NA	5203	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.030000	0.547264	-84(AGTTATAAAAGC,-,0.00)
mm_48859.1	chr5	149769404	149769604	-	1	NA	NA	NA	42247	NR_077242	100861794	Mm.402054	NR_077242	ENSMUSG00000106740	Gm21221	-	predicted gene, 21221	ncRNA	0.030000	0.522388	
mm_99033.1	chr11	98959664	98959864	+	1	NA	NA	NA	-707	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.055000	0.582090	
mm_121789.1	chr14	19977132	19977332	-	1	NA	NA	NA	17	NM_001038637	14702	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.025000	0.542289	
mm_130142.1	chr15	90898442	90898642	-	1	NA	NA	NA	-66	NR_033583	20738	Mm.431547	NR_033583		Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.015000	0.547264	-97(TACCTTTAAAGG,-,0.00),-96(ACCTTTAAAGGG,+,0.00),-96(ACCTTTAAAGGG,-,0.00),-95(CCTTTAAAGGGA,+,0.00)
mm_107981.1	chr12	72945669	72945869	+	1	NA	NA	NA	5887	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	0.125000	0.766169	
mm_70572.1	chr8	13159483	13159683	+	1	NA	NA	NA	422	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.125000	0.751244	
mm_98960.1	chr11	98575823	98576023	+	1	NA	NA	NA	11322	NM_025661	66612	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	0.025000	0.512438	
mm_163657.1	chr13	73870646	73870846	+	1	NA	NA	NA	-23115	NM_001347535	72293	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2 homolog (Drosophila)	protein-coding	0.005000	0.442786	
mm_123256.1	chr14	61046409	61046609	-	1	NA	NA	NA	346	NM_013869	29820	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.055000	0.666667	
mm_56733.1	chr6	115730984	115731184	-	1	NA	NA	NA	27915	NM_144805	94346	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0.035000	0.557214	
mm_56009.1	chr6	86516093	86516293	-	1	NA	NA	NA	9972	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.000000	0.512438	
mm_127185.1	chr15	98993170	98993370	+	1	NA	NA	NA	7305	NR_045991	75951	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.090000	0.611940	
mm_150649.1	chr19	41911827	41912027	+	1	NA	NA	NA	56	NM_023418	18648	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	0.115000	0.681592	
mm_102361.1	chr11	58330146	58330346	-	1	NA	NA	NA	93	NM_001256520	319475	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	0.070000	0.497512	
mm_96200.1	chr11	62028556	62028756	+	1	NA	NA	NA	-48368	NM_001029936	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.010000	0.398010	
mm_89906.1	chr10	111164793	111164993	+	1	NA	NA	NA	91	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.140000	0.736318	
mm_118007.1	chr13	100616859	100617059	-	1	NA	NA	NA	12	NM_001038602	218518	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	0.125000	0.746269	
mm_149039.1	chr19	8819971	8820171	+	1	NA	NA	NA	670	NM_001081196	68693	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0.115000	0.656716	
mm_97855.1	chr11	83069770	83069970	+	1	NA	NA	NA	4758	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.025000	0.467662	
mm_108771.1	chr12	89812250	89812450	+	1	NA	NA	NA	-133	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.045000	0.592040	
mm_83173.1	chr9	40687809	40688009	-	1	NA	NA	NA	1945	NM_133733	71566	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.010000	0.457711	-36(CAGTATAAAAAG,-,0.00)
mm_172111.1	chr6	3200814	3201014	+	1	NA	NA	NA	-87605	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.060000	0.547264	
mm_62472.1	chr7	101836514	101836714	+	1	NA	NA	NA	1210	NM_001122739	16332	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0.095000	0.681592	
mm_148991.1	chr19	8617951	8618151	+	1	NA	NA	NA	55	NM_008766	18399	Mm.30090	NM_008766	ENSMUSG00000024650	Slc22a6	NKT|Oat1|Orctl1|mOat1	solute carrier family 22 (organic anion transporter), member 6	protein-coding	0.030000	0.567164	
mm_136081.1	chr16	84835231	84835431	-	1	NA	NA	NA	207	NM_008065	14390	Mm.18974	NM_008065	ENSMUSG00000008976	Gabpa	GABPalpha	GA repeat binding protein, alpha	protein-coding	0.090000	0.651741	
mm_148323.1	chr18	84012279	84012479	-	1	NA	NA	NA	74183	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.015000	0.412935	
mm_153683.1	chr19	44396610	44396810	-	1	NA	NA	NA	10999	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.507463	
mm_53622.1	chr6	140479682	140479882	+	1	NA	NA	NA	55683	NM_144920	109135	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.015000	0.462687	
mm_156778.1	chrX	161297673	161297873	+	1	NA	NA	NA	135023	NM_001290651	107815	Mm.159173	NM_133194	ENSMUSG00000000037	Scml2	4932420G07Rik	sex comb on midleg-like 2 (Drosophila)	protein-coding	0.050000	0.477612	
mm_52236.1	chr6	104493089	104493289	+	1	NA	NA	NA	145	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding	0.020000	0.492537	
mm_28841.1	chr3	96592666	96592866	-	1	NA	NA	NA	1415	NM_001293701	69870	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	0.010000	0.388060	
mm_84849.1	chr9	78443137	78443337	-	1	NA	NA	NA	0	NR_125721	214763	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0.070000	0.601990	
mm_106671.1	chr11	121672986	121673186	-	1	NA	NA	NA	65	NM_178664	210004	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0.085000	0.636816	
mm_6249.1	chr1	68766471	68766671	-	1	NA	NA	NA	341488	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	0.005000	0.417910	
mm_166440.1	chr5	137211012	137211212	-	1	NA	NA	NA	-77142	NM_009599	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.005000	0.502488	
mm_44394.1	chr5	17833348	17833548	-	1	NA	NA	NA	2448	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.010000	0.432836	
mm_49089.1	chr6	7036811	7037011	+	1	NA	NA	NA	80893	NM_001077713	71238	Mm.389086	NM_001077713	ENSMUSG00000042505	Sdhaf3	0610005M07Rik|4933430A16Rik|Acn9	succinate dehydrogenase complex assembly factor 3	protein-coding	0.000000	0.298507	24(TTCCTTAAAAGA,-,0.00),25(TCCTTAAAAGAC,+,0.00)
mm_78639.1	chr9	40269189	40269389	+	1	NA	NA	NA	73	NM_178227	235281	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.060000	0.656716	
mm_67922.1	chr7	99863265	99863465	-	1	NA	NA	NA	4147	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.015000	0.477612	
mm_141765.1	chr17	34282792	34282992	-	1	NA	NA	NA	4879	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.000000	0.472637	
mm_126200.1	chr15	78877084	78877284	+	1	NA	NA	NA	-6	NM_145929	106039	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	0.075000	0.597015	-76(GCCCTTTTAAGG,-,0.00),-75(CCCTTTTAAGGG,-,0.00),-74(CCTTTTAAGGGA,+,0.00),-73(CTTTTAAGGGAC,+,0.00)
mm_8354.1	chr1	150392611	150392811	-	1	NA	NA	NA	-127	NM_133780	108989	Mm.174256	NM_133780	ENSMUSG00000006005	Tpr	2610029M07Rik|C77892	translocated promoter region, nuclear basket protein	protein-coding	0.045000	0.542289	
mm_40886.1	chr5	74614403	74614603	+	1	NA	NA	NA	63369	NM_001159580	16924	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.020000	0.462687	
mm_144144.1	chr18	4994796	4994996	+	1	NA	NA	NA	-51693	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.010000	0.437811	83(GTCTTTAAAGGT,-,0.00)
mm_146850.1	chr18	24020681	24020881	-	1	NA	NA	NA	-10	NM_021559	59057	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf191|Znf24|Znp191	zinc finger protein 24	protein-coding	0.145000	0.766169	
mm_73769.1	chr8	115830435	115830635	+	1	NA	NA	NA	-123641	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.000000	0.472637	
mm_112219.1	chr12	113429042	113429242	-	1	NA	NA	NA	-60423	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.492537	
mm_70102.1	chr7	142661162	142661362	-	1	NA	NA	NA	9	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.070000	0.582090	
mm_30052.1	chr3	136325949	136326149	-	1	NA	NA	NA	17	NM_001310749	242248	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0.020000	0.606965	
mm_118609.1	chr14	20929298	20929498	+	1	NA	NA	NA	-35	NM_009502	22330	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0.115000	0.646766	
mm_168633.1	chr1	182629777	182629977	+	1	NA	NA	NA	64870	NM_130890	170725	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	0.005000	0.532338	
mm_161519.1	chr15	99528143	99528343	-	1	NA	NA	NA	-78	NM_001038658	72393	Mm.39760	NM_028224	ENSMUSG00000023011	Faim2	2900002L20Rik|Lfg|Lfg2|NMP25|Nmp35|Tmbim2	Fas apoptotic inhibitory molecule 2	protein-coding	0.020000	0.557214	
mm_154270.1	chr19	60772815	60773015	-	1	NA	NA	NA	1470	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.030000	0.452736	
mm_45091.1	chr5	44101858	44102058	-	1	NA	NA	NA	-222	NM_001163577	19126	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.030000	0.552239	
mm_33161.1	chr4	125949894	125950094	+	1	NA	NA	NA	-27684	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	0.010000	0.601990	
mm_2538.1	chr1	107420094	107420294	+	1	NA	NA	NA	-2495	NM_027548	116872	Mm.66015	NM_027548	ENSMUSG00000067001	Serpinb7	4631416M05Rik|megsin|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 7	protein-coding	0.000000	0.467662	-33(AGTTATAAAAGC,-,0.00)
mm_84780.1	chr9	75970928	75971128	-	1	NA	NA	NA	-43949	NM_173731	208982	Mm.82306	NM_173731	ENSMUSG00000007908	Hmgcll1	BC037381	3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	protein-coding	0.005000	0.288557	72(CTCTTTAAAAAA,-,0.00)
mm_168618.1	chr11	77763162	77763362	+	1	NA	NA	NA	-13973	NM_001291213	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.155000	0.800995	
mm_77215.1	chr8	114723251	114723451	-	1	NA	NA	NA	283699	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.015000	0.532338	
mm_9912.1	chr1	189000285	189000485	-	1	NA	NA	NA	7455	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.025000	0.373134	
mm_153809.1	chr19	46045239	46045439	-	1	NA	NA	NA	-128	NM_001113408	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.135000	0.666667	
mm_147888.1	chr18	64888680	64888880	-	1	NA	NA	NA	1024	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.030000	0.497512	-61(GGCTTTTAAAAA,-,0.00),-60(GCTTTTAAAAAC,+,0.00),-60(GCTTTTAAAAAC,-,0.00)
mm_135078.1	chr16	34262957	34263157	-	1	NA	NA	NA	250970	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.035000	0.606965	
mm_48329.1	chr5	138997519	138997719	-	1	NA	NA	NA	-2666	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.100000	0.616915	-27(TTTTTAATAGCG,+,0.00)
mm_77829.1	chr9	4309634	4309834	+	1	NA	NA	NA	-9	NM_001164574	69149	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	0.085000	0.621891	
mm_12671.1	chr2	75729431	75729631	+	1	NA	NA	NA	-24868	NM_010902	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.000000	0.412935	-33(ACTTATATAGAG,+,0.00),30(AGGCATTAAAGG,-,0.00)
mm_140730.1	chr17	15527198	15527398	-	1	NA	NA	NA	3	NM_008799	18567	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	0.075000	0.676617	
mm_123384.1	chr14	63321438	63321638	-	1	NA	NA	NA	-76267	NM_001310610	14463	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0.010000	0.492537	
mm_48816.1	chr5	149015712	149015912	-	1	NA	NA	NA	8850	NR_040429	100503307	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	OTTMUSG00000021225	predicted gene 15408	ncRNA	0.050000	0.502488	
mm_105083.1	chr11	100845913	100846113	-	1	NA	NA	NA	4572	NM_001113563	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.015000	0.497512	78(GAGCCTTAAAGC,-,0.00)
mm_15076.1	chr2	153125419	153125619	+	1	NA	NA	NA	17051	NM_010407	15162	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.005000	0.452736	
mm_24419.1	chr3	90526758	90526958	+	1	NA	NA	NA	9	NM_001163526	66166	Mm.24006	NM_025393	ENSMUSG00000042306	S100a14	1110013O05Rik|S100a15|S114	S100 calcium binding protein A14	protein-coding	0.010000	0.626866	
mm_39697.1	chr5	27111288	27111488	+	1	NA	NA	NA	62189	NM_207282	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.005000	0.442786	4(TCGTATATAAGA,-,0.00)
mm_94406.1	chr11	5797419	5797619	+	1	NA	NA	NA	6277	NM_018870	56012	Mm.219627	NM_018870	ENSMUSG00000020475	Pgam2	-	phosphoglycerate mutase 2	protein-coding	0.040000	0.597015	
mm_78815.1	chr9	44076036	44076236	+	1	NA	NA	NA	6707	NM_016808	53376	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.035000	0.601990	
mm_106404.1	chr11	118909701	118909901	-	1	NA	NA	NA	-229	NM_001039167	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.085000	0.716418	
mm_73420.1	chr8	106078709	106078909	+	1	NA	NA	NA	19206	NM_010901	18021	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.000000	0.378109	
mm_13369.1	chr2	103566247	103566447	+	1	NA	NA	NA	37	NM_178890	99382	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.090000	0.621891	
mm_73567.1	chr8	109614134	109614334	+	1	NA	NA	NA	-283	NM_001286454	244646	Mm.436810	NM_181544	ENSMUSG00000048827	Pkd1l3	-	polycystic kidney disease 1 like 3	protein-coding	0.030000	0.472637	
mm_103646.1	chr11	78967385	78967585	-	1	NA	NA	NA	17439	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.015000	0.457711	
mm_118559.1	chr14	17981536	17981736	+	1	NA	NA	NA	-8	NM_009380	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.020000	0.542289	
mm_22449.1	chr2	181698340	181698540	-	1	NA	NA	NA	2	NM_199023	277496	Mm.212749	NM_199023	ENSMUSG00000045794	Lkaaear1	4930526D03Rik|Gm692	LKAAEAR motif containing 1 (IKAAEAR murine motif)	protein-coding	0.020000	0.542289	
mm_107996.1	chr12	73336601	73336801	+	1	NA	NA	NA	49853	NM_001037717	625098	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0.000000	0.398010	
mm_47047.1	chr5	116083085	116083285	-	1	NA	NA	NA	61	NM_001101546	545798	Mm.483995	NM_001101546	ENSMUSG00000079278	Tmem233	DSPB2|Gm13843|OTTMUSG00000014722	transmembrane protein 233	protein-coding	0.060000	0.611940	
mm_79570.1	chr9	58134178	58134378	+	1	NA	NA	NA	203	NM_001162476	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.010000	0.527363	
mm_170958.1	chr2	54384926	54385126	+	1	NA	NA	NA	-51361	NM_173030	271786	Mm.330227	NM_173030	ENSMUSG00000060988	Galnt13	A230002A12|A230020F20|BB182356	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	protein-coding	0.050000	0.507463	
mm_139029.1	chr17	46160980	46161180	+	1	NA	NA	NA	48	NM_001145979	56055	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.105000	0.736318	
mm_56997.1	chr6	121002909	121003109	-	1	NA	NA	NA	44165	NR_138099	215458	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	0.010000	0.577114	
mm_17186.1	chr2	25460899	25461099	-	1	NA	NA	NA	95	NM_153557	227622	Mm.261780	NM_153557	ENSMUSG00000047617	BC029214	D930050G13Rik|Paxx	cDNA sequence BC029214	protein-coding	0.080000	0.597015	
mm_9763.1	chr1	180894325	180894525	-	1	NA	NA	NA	1317	NM_177099	320202	Mm.87078	NM_177099	ENSMUSG00000066652	Lefty2	6030463A22Rik|Ebaf|Lefta|Leftb|lefty-2|lefty-B	left-right determination factor 2	protein-coding	0.060000	0.611940	
mm_74499.1	chr8	7580107	7580307	-	1	NA	NA	NA	1080566	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.005000	0.343284	
mm_106622.1	chr11	120824007	120824207	-	1	NA	NA	NA	440	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.125000	0.701493	-35(CGGTTTAAATAG,-,0.00),-33(GTTTAAATAGCG,+,0.00)
mm_113085.1	chr13	23870163	23870363	+	1	NA	NA	NA	-10	NM_009198	20504	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	0.015000	0.437811	
mm_34960.1	chr4	156002175	156002375	+	1	NA	NA	NA	8938	NM_001302468	20318	Mm.293517	NM_011341	ENSMUSG00000029076	Sdf4	Cab45	stromal cell derived factor 4	protein-coding	0.015000	0.482587	
mm_167366.1	chr8	87472428	87472628	-	1	NA	NA	NA	64	NM_019626	12404	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0.125000	0.731343	
mm_150406.1	chr19	36834207	36834407	+	1	NA	NA	NA	75	NM_001163635	74493	Mm.249310	NM_001163635	ENSMUSG00000024811	Tnks2	5430432P15Rik|AA517131|AI662480|ARTD6|TNKS-2|Tank2	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2	protein-coding	0.185000	0.776119	
mm_65011.1	chr7	17082239	17082439	-	1	NA	NA	NA	8299	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.005000	0.507463	
mm_58680.1	chr7	12512400	12512600	+	1	NA	NA	NA	-51	NM_028434	73090	Mm.84622	NM_028434	ENSMUSG00000030385	2900092C05Rik	-	RIKEN cDNA 2900092C05 gene	protein-coding	0.005000	0.467662	
mm_99760.1	chr11	106755066	106755266	+	1	NA	NA	NA	3940	NM_001033435	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.000000	0.422886	
mm_130830.1	chr15	101846317	101846517	-	1	NA	NA	NA	4369	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.025000	0.587065	
mm_92928.1	chr10	84441230	84441430	-	1	NA	NA	NA	-859	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.070000	0.691542	
mm_140419.1	chr17	87673235	87673435	+	1	NA	NA	NA	778	NM_008628	17685	Mm.4619	NM_008628	ENSMUSG00000024151	Msh2	AI788990	mutS homolog 2	protein-coding	0.010000	0.472637	
mm_170833.1	chr2	177000852	177001052	+	1	NA	NA	NA	-73139	NM_001305133	102639598	Mm.379980	NM_029813	ENSMUSG00000074527	Gm14296	-	predicted gene 14296	protein-coding	0.015000	0.492537	
mm_153162.1	chr19	34492945	34493145	-	1	NA	NA	NA	-17910	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.005000	0.407960	
mm_108902.1	chr12	100199470	100199670	+	1	NA	NA	NA	135	NM_009790	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.130000	0.676617	
mm_42640.1	chr5	118561016	118561216	+	1	NA	NA	NA	397	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.070000	0.601990	
mm_88477.1	chr10	77613651	77613851	+	1	NA	NA	NA	42	NR_125903	20610	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.005000	0.507463	
mm_171256.1	chr3	81711768	81711968	-	1	NA	NA	NA	-90157	NR_138586	320566	Mm.208417	NR_138586	ENSMUSG00000103695	A830029E22Rik	-	RIKEN cDNA A830029E22 gene	ncRNA	0.075000	0.661692	
mm_49826.1	chr6	37805876	37806076	+	1	NA	NA	NA	-64835	NM_001272064	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.060000	0.477612	-19(GTCTAGAAAAAG,-,0.00)
mm_128989.1	chr15	74834614	74834814	-	1	NA	NA	NA	6929	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.000000	0.422886	-78(GGGTTTTAAAGC,-,0.00)
mm_146739.1	chr18	15403549	15403749	-	1	NA	NA	NA	109	NM_001317729	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.020000	0.547264	
mm_131198.1	chr16	8594579	8594779	+	1	NA	NA	NA	43022	NM_025708	66690	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	0.010000	0.517413	
mm_164850.1	chr18	46074841	46075041	+	1	NA	NA	NA	-29681	NR_040342	107003	Mm.395148	NR_040342		A330093E20Rik	AU043608	RIKEN cDNA A330093E20 gene	ncRNA	0.025000	0.442786	
mm_26831.1	chr3	10439991	10440191	-	1	NA	NA	NA	39	NM_029068	74718	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0.085000	0.711443	
mm_128844.1	chr15	71443965	71444165	-	1	NA	NA	NA	283773	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding	0.010000	0.432836	
mm_73853.1	chr8	117738967	117739167	+	1	NA	NA	NA	37121	NM_008290	15486	Mm.276466	NM_008290	ENSMUSG00000031844	Hsd17b2	AI194836|AI194967|AI255511	hydroxysteroid (17-beta) dehydrogenase 2	protein-coding	0.005000	0.293532	
mm_47246.1	chr5	121568896	121569096	-	1	NA	NA	NA	-23104	NM_010765	17165	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	0.050000	0.587065	
mm_121774.1	chr14	19889149	19889349	-	1	NA	NA	NA	50324	NR_105025	52512	Mm.483998	NR_105025		D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.010000	0.393035	
mm_38079.1	chr4	134127964	134128164	-	1	NA	NA	NA	689	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.030000	0.562189	
mm_159915.1	chr6	48612840	48613040	+	1	NA	NA	NA	-240	NM_173429	243372	Mm.435190	NM_173429	ENSMUSG00000007216	Zfp775	C130032F08Rik|Znf775	zinc finger protein 775	protein-coding	0.010000	0.457711	
mm_62277.1	chr7	99594492	99594692	+	1	NA	NA	NA	32511	NM_001195529	100503386	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	0.020000	0.557214	
mm_96904.1	chr11	70455775	70455975	+	1	NA	NA	NA	-3747	NM_001029929	574428	Mm.472771	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.010000	0.542289	
mm_165047.1	chr19	40476453	40476653	-	1	NA	NA	NA	-25155	NM_001034963	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.010000	0.462687	
mm_3697.1	chr1	153760812	153761012	+	1	NA	NA	NA	11486	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.025000	0.373134	
mm_123254.1	chr14	61046201	61046401	-	1	NA	NA	NA	554	NM_013869	29820	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.070000	0.507463	
mm_141028.1	chr17	25240035	25240235	-	1	NA	NA	NA	5	NM_001346737	214505	Mm.38607	NM_172529	ENSMUSG00000035521	Gnptg	6430527N14Rik|A830081F19|AU067667|AU067744|Mdcp1|Tce7	N-acetylglucosamine-1-phosphotransferase, gamma subunit	protein-coding	0.095000	0.636816	
mm_98062.1	chr11	85832669	85832869	+	1	NA	NA	NA	154	NM_009324	21385	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0.065000	0.587065	
mm_149915.1	chr19	26606345	26606545	+	1	NA	NA	NA	1285	NM_011416	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.080000	0.701493	
mm_40042.1	chr5	33821005	33821205	+	1	NA	NA	NA	-22007	NM_175231	107823	Mm.19892	NM_175231	ENSMUSG00000057406	Whsc1	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|NSD2|Whsc1l|mKIAA1090	Wolf-Hirschhorn syndrome candidate 1 (human)	protein-coding	0.150000	0.781095	
mm_14351.1	chr2	129602109	129602309	+	1	NA	NA	NA	9040	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.010000	0.537313	
mm_12503.1	chr2	71873169	71873369	+	1	NA	NA	NA	45	NM_172665	228026	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.135000	0.766169	
mm_20966.1	chr2	151972785	151972985	-	1	NA	NA	NA	509	NM_001289151	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.010000	0.552239	78(CCTTTTCTGCCC,+,0.00)
mm_161942.1	chr19	4139645	4139845	+	1	NA	NA	NA	-54	NM_206973	269053	Mm.131677	NM_206973	ENSMUSG00000044724	Gpr152	A930009H15Rik|Gm673	G protein-coupled receptor 152	protein-coding	0.010000	0.557214	
mm_65333.1	chr7	24978314	24978514	-	1	NA	NA	NA	-5686	NM_010261	14470	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.015000	0.636816	
mm_167102.1	chr7	110859576	110859776	-	1	NA	NA	NA	3277	NM_053247	114332	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	0.015000	0.477612	
mm_5393.1	chr1	33605729	33605929	-	1	NA	NA	NA	63965	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	0.000000	0.313433	
mm_89056.1	chr10	82881714	82881914	+	1	NA	NA	NA	15188	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.030000	0.492537	
mm_88083.1	chr10	68136915	68137115	+	1	NA	NA	NA	141711	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.015000	0.487562	-67(GCTTTAATGAGC,+,0.00)
mm_171805.1	chr5	126318359	126318559	+	1	NA	NA	NA	-712330	NR_040685	71247	Mm.399586	NR_040685	ENSMUSG00000105490	4933438B17Rik	-	RIKEN cDNA 4933438B17 gene	ncRNA	0.000000	0.368159	
mm_132500.1	chr16	36951045	36951245	+	1	NA	NA	NA	16162	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.015000	0.527363	
mm_35712.1	chr4	44233745	44233945	-	1	NA	NA	NA	-12578	NR_039565	100628618		NR_039565	ENSMUSG00000092677	Mir5106	mir-5106|mmu-mir-5106|mu-mir-5106	microRNA 5106	ncRNA	0.205000	0.840796	
mm_60543.1	chr7	44480425	44480625	+	1	NA	NA	NA	-3992	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.497512	
mm_26839.1	chr3	14533698	14533898	-	1	NA	NA	NA	10	NM_028915	71710	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	0.080000	0.611940	63(GCCTTTAAAGTA,+,0.00)
mm_130883.1	chr15	102252520	102252720	-	1	NA	NA	NA	4902	NM_011244	19411	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.040000	0.666667	
mm_73497.1	chr8	107165817	107166017	+	1	NA	NA	NA	15256	NM_025558	66427	Mm.20242	NM_025558	ENSMUSG00000031924	Cyb5b	1810044O22Rik|AU015618|Cyb5m	cytochrome b5 type B	protein-coding	0.025000	0.482587	
mm_141026.1	chr17	25211804	25212004	-	1	NA	NA	NA	-10678	NM_028789	74154	Mm.267353	NM_028789	ENSMUSG00000015127	Unkl	1300004G08Rik	unkempt family like zinc finger	protein-coding	0.020000	0.557214	
mm_22874.1	chr3	29198669	29198869	+	1	NA	NA	NA	116192	NM_029412	75740	Mm.330948	NM_029412	ENSMUSG00000063600	Egfem1	6130401L20Rik|Efcab11	EGF-like and EMI domain containing 1	protein-coding	0.010000	0.437811	
mm_132782.1	chr16	44811696	44811896	+	1	NA	NA	NA	-8932	NM_207244	239849	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0.015000	0.442786	
mm_73510.1	chr8	107368199	107368399	+	1	NA	NA	NA	34906	NM_008706	18104	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	0.010000	0.442786	
mm_147658.1	chr18	60591725	60591925	-	1	NA	NA	NA	-109	NM_133363	170947	Mm.159257	NM_133363	ENSMUSG00000049173	Myoz3	4833419K08Rik|Fatz-3	myozenin 3	protein-coding	0.030000	0.547264	
mm_14284.1	chr2	128802202	128802402	+	1	NA	NA	NA	-16001	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.015000	0.427861	-94(TCTTTTATACAG,+,0.00)
mm_138454.1	chr17	35135835	35136035	+	1	NA	NA	NA	221	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.025000	0.517413	
mm_140516.1	chr17	6007382	6007582	-	1	NA	NA	NA	-98	NM_001290698	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.015000	0.557214	
mm_154736.1	chrX	9862037	9862237	+	1	NA	NA	NA	12434	NM_029229	385317	Mm.108656	NM_029229	ENSMUSG00000048994	H2al3	4930557A04Rik	H2A histone family member L3	protein-coding	0.010000	0.442786	
mm_60699.1	chr7	45175497	45175697	+	1	NA	NA	NA	2294	NR_106022	102465638		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0.030000	0.527363	
mm_61889.1	chr7	89736581	89736781	+	1	NA	NA	NA	103863	NM_181407	109264	Mm.334011	NM_181407	ENSMUSG00000030621	Me3	1700020C08Rik|B230207H15Rik	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding	0.020000	0.522388	
mm_85569.1	chr9	107260941	107261141	-	1	NA	NA	NA	28355	NM_001316691	102626	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0.035000	0.522388	-28(GCCTTTATGCAC,+,0.00)
mm_59881.1	chr7	30291855	30292055	+	1	NA	NA	NA	202	NM_001081114	76686	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	0.035000	0.621891	
mm_24256.1	chr3	89186639	89186839	+	1	NA	NA	NA	3514	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.025000	0.532338	
mm_11914.1	chr2	52071448	52071648	+	1	NA	NA	NA	-1289	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.025000	0.492537	
mm_75228.1	chr8	39618559	39618759	-	1	NA	NA	NA	24019	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.010000	0.358209	
mm_69076.1	chr7	126976037	126976237	-	1	NA	NA	NA	223	NM_001347656	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.085000	0.621891	
mm_130544.1	chr15	98953502	98953702	-	1	NA	NA	NA	-101	NM_011653	22142	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	0.050000	0.562189	18(CTGTATATAAGG,-,0.00)
mm_104551.1	chr11	96780248	96780448	-	1	NA	NA	NA	-2793	NM_001163389	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.045000	0.477612	
mm_115551.1	chr13	8871657	8871857	-	1	NA	NA	NA	-21	NM_001039388	207615	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.000000	0.472637	
mm_66859.1	chr7	54412426	54412626	-	1	NA	NA	NA	-422719	NM_178705	233271	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	0.035000	0.487562	
mm_96255.1	chr11	62602874	62603074	+	1	NA	NA	NA	97	NR_030738	69221	Mm.270874	NR_030738	ENSMUSG00000086841	2410006H16Rik	-	RIKEN cDNA 2410006H16 gene	ncRNA	0.100000	0.671642	
mm_3561.1	chr1	150426779	150426979	+	1	NA	NA	NA	-33824	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.025000	0.467662	
mm_27819.1	chr3	79063447	79063647	-	1	NA	NA	NA	81340	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.303483	
mm_165837.1	chr3	156852101	156852301	+	1	NA	NA	NA	290407	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.015000	0.462687	
mm_36828.1	chr4	106145712	106145912	-	1	NA	NA	NA	-170401	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.005000	0.482587	
mm_132301.1	chr16	33518454	33518654	+	1	NA	NA	NA	-41	NM_001083902	171286	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.025000	0.467662	88(CCTTTAATAACA,+,0.00)
mm_120546.1	chr14	67316020	67316220	+	1	NA	NA	NA	-1409	NM_001037931	628416	Mm.390723	NM_001037931		Gm6878	EG628416	predicted gene 6878	protein-coding	0.025000	0.422886	
mm_101792.1	chr11	46166256	46166456	-	1	NA	NA	NA	3	NM_172524	214112	Mm.225253	NM_172524	ENSMUSG00000020411	Nipal4	9530066K23Rik	NIPA-like domain containing 4	protein-coding	0.090000	0.716418	
mm_91113.1	chr10	19186354	19186554	-	1	NA	NA	NA	19216	NR_038022	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.030000	0.522388	
mm_37292.1	chr4	119183916	119184116	-	1	NA	NA	NA	5995	NM_013848	27028	Mm.290753	NM_013848	ENSMUSG00000028644	Ermap	AA409279|AI666418	erythroblast membrane-associated protein	protein-coding	0.020000	0.537313	
mm_162492.1	chr1	135924264	135924464	+	1	NA	NA	NA	-5157	NM_019645	18772	Mm.4494	NM_019645	ENSMUSG00000026413	Pkp1	-	plakophilin 1	protein-coding	0.005000	0.482587	
mm_13919.1	chr2	120609284	120609484	+	1	NA	NA	NA	2	NM_025475	66296	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0.110000	0.686567	
mm_124687.1	chr15	6435234	6435434	+	1	NA	NA	NA	-9999	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.015000	0.557214	
mm_57000.1	chr6	121003017	121003217	-	1	NA	NA	NA	44273	NR_138099	215458	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	0.000000	0.522388	
mm_29750.1	chr3	127027469	127027669	-	1	NA	NA	NA	-29117	NM_178655	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.005000	0.477612	
mm_115875.1	chr13	21746232	21746432	-	1	NA	NA	NA	4221	NM_178211	319160	Mm.255646	NM_178211	ENSMUSG00000064288	Hist1h4k	-	histone cluster 1, H4k	protein-coding	0.000000	0.348259	-13(CCATTTAAACCA,+,0.00)
mm_129415.1	chr15	78388644	78388844	-	1	NA	NA	NA	25	NM_001163613	73376	Mm.73222	NM_028522	ENSMUSG00000062154	Tex33	1700061J05Rik|Ean57	testis expressed 33	protein-coding	0.000000	0.517413	
mm_91497.1	chr10	37135934	37136134	-	1	NA	NA	NA	2892	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.030000	0.407960	
mm_72110.1	chr8	71612054	71612254	+	1	NA	NA	NA	1130	NM_146211	234407	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	0.020000	0.542289	
mm_95267.1	chr11	45004992	45005192	+	1	NA	NA	NA	111836	NR_045100	100504255	Mm.123608	NR_045100	ENSMUSG00000084773	Gm12159	OTTMUSG00000005475	predicted gene 12159	ncRNA	0.000000	0.303483	-30(TCTTTTATAAAC,+,0.00),35(GTTTTTAAAGCT,+,0.00)
mm_133960.1	chr16	4087651	4087851	-	1	NA	NA	NA	-9941	NM_026508	68015	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0.020000	0.552239	
mm_98282.1	chr11	89060570	89060770	+	1	NA	NA	NA	78	NM_019505	56077	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	0.130000	0.731343	
mm_30818.1	chr4	21847958	21848158	+	1	NA	NA	NA	390	NR_028384	67735	Mm.391650	NR_028384		4930528A17Rik	-	RIKEN cDNA 4930528A17 gene	ncRNA	0.075000	0.512438	
mm_17894.1	chr2	35066922	35067122	-	1	NA	NA	NA	-5581	NM_010406	15139	Mm.2168	NM_010406	ENSMUSG00000026874	Hc	C5|C5a|He	hemolytic complement	protein-coding	0.025000	0.462687	
mm_44094.1	chr5	149247347	149247547	+	1	NA	NA	NA	-17557	NM_001308462	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.035000	0.587065	
mm_90522.1	chr10	128059025	128059225	+	1	NA	NA	NA	143	NM_019766	56351	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3 (cytosolic)	protein-coding	0.150000	0.706468	
mm_117869.1	chr13	98877780	98877980	-	1	NA	NA	NA	13162	NM_001048267	238799	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.005000	0.378109	
mm_37183.1	chr4	117277618	117277818	-	1	NA	NA	NA	11737	NM_001310730	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.035000	0.611940	
mm_158765.1	chrX	166546412	166546612	-	1	NA	NA	NA	-36034	NM_001007577	245695	Mm.336318	NM_001007577	ENSMUSG00000051224	Tceanc	A630018P17Rik|Gm390	transcription elongation factor A (SII) N-terminal and central domain containing	protein-coding	0.010000	0.472637	
mm_38011.1	chr4	133752937	133753137	-	1	NA	NA	NA	574	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.115000	0.711443	
mm_140323.1	chr17	86753570	86753770	+	1	NA	NA	NA	-194	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.125000	0.741294	-6(GTTTTTAAAGTG,+,0.00)
mm_159471.1	chr4	12140201	12140401	+	1	NA	NA	NA	184	NM_028226	72397	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	0.075000	0.616915	
mm_70550.1	chr8	13056052	13056252	+	1	NA	NA	NA	-4756	NM_025834	66901	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.020000	0.427861	
mm_73796.1	chr8	117265807	117266007	+	1	NA	NA	NA	8888	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.025000	0.547264	
mm_9210.1	chr1	171229784	171229984	-	1	NA	NA	NA	4465	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.020000	0.527363	
mm_166404.1	chr5	136179669	136179869	+	1	NA	NA	NA	-9113	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.020000	0.527363	
mm_133806.1	chr16	95700457	95700657	+	1	NA	NA	NA	-1850	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.020000	0.522388	
mm_143542.1	chr17	74016902	74017102	-	1	NA	NA	NA	30914	NM_053188	94224	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.005000	0.437811	
mm_55555.1	chr6	71270640	71270840	-	1	NA	NA	NA	-931	NR_106192	102465900		NR_106192	ENSMUSG00000098623	Mir8112	Gm27739|mmu-mir-8112	microRNA 8112	ncRNA	0.010000	0.527363	
mm_20879.1	chr2	148771318	148771518	-	1	NA	NA	NA	79	NM_030059	78240	Mm.99424	NM_030059	ENSMUSG00000036958	Cst11	9230101F08Rik|BB067629|CRES2|mCSTE1	cystatin 11	protein-coding	0.025000	0.522388	
mm_133645.1	chr16	91793467	91793667	+	1	NA	NA	NA	64196	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.035000	0.497512	
mm_63745.1	chr7	130943355	130943555	+	1	NA	NA	NA	7252	NM_019564	56213	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	0.015000	0.462687	
mm_53787.1	chr6	146589040	146589240	+	1	NA	NA	NA	11229	NM_026218	67529	Mm.333499	NM_026218	ENSMUSG00000040242	Fgfr1op2	1500031J01Rik	FGFR1 oncogene partner 2	protein-coding	0.000000	0.358209	
mm_118878.1	chr14	25868742	25868942	+	1	NA	NA	NA	26687	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.010000	0.592040	
mm_79318.1	chr9	52104148	52104348	+	1	NA	NA	NA	-11375	NR_105750	102465150		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	0.020000	0.452736	
mm_88101.1	chr10	68780164	68780364	+	1	NA	NA	NA	56518	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.010000	0.298507	
mm_167504.1	chr9	13298093	13298293	+	1	NA	NA	NA	51237	NM_025534	66396	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.050000	0.631841	
mm_53197.1	chr6	125539612	125539812	+	1	NA	NA	NA	-13236	NM_011708	22371	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.020000	0.487562	-34(GGCTTTATGAGC,-,0.00)
mm_167708.1	chr9	96636662	96636862	+	1	NA	NA	NA	-5259	NM_053268	114713	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.025000	0.402985	
mm_103450.1	chr11	76202537	76202737	-	1	NA	NA	NA	581	NM_027773	116972	Mm.188413	NM_027773	ENSMUSG00000069808	Fam57a	2310047D13Rik|4932415L08Rik|5430402E13Rik|5430420K21Rik|Wdt3	family with sequence similarity 57, member A	protein-coding	0.030000	0.552239	
mm_49562.1	chr6	30580781	30580981	+	1	NA	NA	NA	12512	NM_027926	71791	Mm.105759	NM_027926	ENSMUSG00000039070	Cpa4	1110019K20Rik|AV009555	carboxypeptidase A4	protein-coding	0.030000	0.532338	
mm_127327.1	chr15	100304867	100305067	+	1	NA	NA	NA	150	NM_027334	70152	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	0.045000	0.562189	
mm_96978.1	chr11	70654013	70654213	+	1	NA	NA	NA	537	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.145000	0.776119	
mm_86426.1	chr10	3834790	3834990	+	1	NA	NA	NA	-37777	NM_001033253	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.015000	0.611940	
mm_110149.1	chr12	26450519	26450719	-	1	NA	NA	NA	5833	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.025000	0.482587	
mm_67158.1	chr7	73541401	73541601	-	1	NA	NA	NA	245	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.040000	0.452736	-62(GCTTTTAGGAGC,+,0.00)
mm_135276.1	chr16	38432799	38432999	-	1	NA	NA	NA	246	NM_134102	85031	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.010000	0.532338	67(ACTTTTATGGCT,+,0.00)
mm_20518.1	chr2	130697372	130697572	-	1	NA	NA	NA	47	NM_001081162	269356	Mm.441391	NM_001081162	ENSMUSG00000074796	Slc4a11	AI503023|BTR1|NaBC1	solute carrier family 4, sodium bicarbonate transporter-like, member 11	protein-coding	0.075000	0.646766	-35(AGCTTTTAAAAC,-,0.00),-34(GCTTTTAAAACA,+,0.00),-33(CTTTTAAAACAG,+,0.00)
mm_149157.1	chr19	9017026	9017226	+	1	NA	NA	NA	-778	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.015000	0.527363	
mm_1683.1	chr1	74856447	74856647	+	1	NA	NA	NA	1518	NM_009872	12570	Mm.153833	NM_009872	ENSMUSG00000090071	Cdk5r2	B230310J22Rik|p39	cyclin-dependent kinase 5, regulatory subunit 2 (p39)	protein-coding	0.030000	0.582090	
mm_2496.1	chr1	106026281	106026481	+	1	NA	NA	NA	35975	NM_001122675	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.000000	0.288557	-85(AACTTTAAAAGG,-,0.00),13(TTCCATATAAGC,-,0.00),15(CCATATAAGCCC,+,0.00)
mm_166360.1	chr5	123248613	123248813	+	1	NA	NA	NA	20523	NM_026000	67151	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0.005000	0.432836	
mm_155934.1	chrX	103493676	103493876	+	1	NA	NA	NA	218	NR_015508	70252	Mm.380486	NR_015508	ENSMUSG00000097571	Jpx	2010000I03Rik|2510040I06Rik|Enox	Jpx transcript, Xist activator (non-protein coding)	ncRNA	0.100000	0.636816	
mm_106397.1	chr11	118797884	118798084	-	1	NA	NA	NA	-36943	NM_001285438	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.000000	0.517413	
mm_118385.1	chr13	117242603	117242803	-	1	NA	NA	NA	22130	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.000000	0.462687	-67(GTGTTTATGAGG,-,0.00)
mm_82473.1	chr9	16501937	16502137	-	1	NA	NA	NA	-123806	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.130000	0.766169	
mm_154066.1	chr19	55315909	55316109	-	1	NA	NA	NA	23	NM_025883	66980	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369	zinc finger, DHHC domain containing 6	protein-coding	0.145000	0.701493	
mm_147977.1	chr18	67449044	67449244	-	1	NA	NA	NA	-8	NM_027130	69597	Mm.426052	NM_027130	ENSMUSG00000024527	Afg3l2	2310036I02Rik|AW260507|Emv66|par	AFG3-like AAA ATPase 2	protein-coding	0.165000	0.731343	
mm_153203.1	chr19	34640623	34640823	-	1	NA	NA	NA	20	NM_053217	112419	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	0.020000	0.517413	
mm_118686.1	chr14	22122069	22122269	+	1	NA	NA	NA	102457	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.020000	0.452736	
mm_138096.1	chr17	34048305	34048505	+	1	NA	NA	NA	9267	NM_001317722	12815	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.005000	0.527363	
mm_35641.1	chr4	43519177	43519377	-	1	NA	NA	NA	4277	NM_009416	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.030000	0.606965	
mm_90962.1	chr10	13324184	13324384	-	1	NA	NA	NA	-124	NM_001033257	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.115000	0.731343	
mm_85887.1	chr9	111053741	111053941	-	1	NA	NA	NA	3403	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.015000	0.507463	
mm_123264.1	chr14	61305264	61305464	-	1	NA	NA	NA	-30	NR_033788	67355	Mm.193728	NR_033788	ENSMUSG00000101505	1700109G14Rik	1700126G13Rik	RIKEN cDNA 1700109G14 gene	ncRNA	0.000000	0.477612	
mm_118734.1	chr14	22275096	22275296	+	1	NA	NA	NA	255484	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.015000	0.398010	
mm_8526.1	chr1	154884305	154884505	-	1	NA	NA	NA	-158485	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.055000	0.616915	
mm_149605.1	chr19	16359211	16359411	+	1	NA	NA	NA	-44307	NR_105832	102465218		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.020000	0.373134	
mm_154908.1	chrX	21360743	21360943	+	1	NA	NA	NA	-22	NR_045668	331392	Mm.23126	NM_198633	ENSMUSG00000051537	Gm5124	EG331392	nucleolar and coiled-body phosphoprotein 1 pseudogene	pseudo	0.075000	0.537313	
mm_116422.1	chr13	41828270	41828470	-	1	NA	NA	NA	19118	NM_175417	109254	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.035000	0.537313	
mm_127126.1	chr15	98111957	98112157	+	1	NA	NA	NA	-3	NM_021514	18642	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	0.015000	0.507463	
mm_23053.1	chr3	35722967	35723167	+	1	NA	NA	NA	-31071	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.025000	0.512438	
mm_94293.1	chr11	4064790	4064990	+	1	NA	NA	NA	37	NM_001029937	380683	Mm.296806	NM_001029937	ENSMUSG00000054986	Sec14l3	1110069O07Rik	SEC14-like lipid binding 3	protein-coding	0.010000	0.572139	
mm_118724.1	chr14	22220530	22220730	+	1	NA	NA	NA	200918	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.010000	0.437811	
mm_125122.1	chr15	30172605	30172805	+	1	NA	NA	NA	112	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.220000	0.860697	
mm_47549.1	chr5	124351177	124351377	-	1	NA	NA	NA	3351	NM_013812	13445	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0.020000	0.636816	
mm_145983.1	chr18	68227852	68228052	+	1	NA	NA	NA	33021	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0.000000	0.507463	
mm_93588.1	chr10	117063251	117063451	-	1	NA	NA	NA	463	NM_007636	12461	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.060000	0.616915	
mm_59097.1	chr7	19696851	19697051	+	1	NA	NA	NA	1447	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.080000	0.661692	
mm_142900.1	chr17	52162536	52162736	-	1	NA	NA	NA	279909	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.005000	0.457711	
mm_98816.1	chr11	97309590	97309790	+	1	NA	NA	NA	-6026	NM_025927	67036	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.025000	0.537313	
mm_113972.1	chr13	51651597	51651797	+	1	NA	NA	NA	-11	NM_001308448	75420	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.155000	0.721393	
mm_134172.1	chr16	10796723	10796923	-	1	NA	NA	NA	0	NM_013637	19118	Mm.42733	NM_013637	ENSMUSG00000022501	Prm1	Prm-1	protamine 1	protein-coding	0.010000	0.587065	-35(ATCTATAAGAGG,-,0.00)
mm_62844.1	chr7	114290246	114290446	+	1	NA	NA	NA	-14230	NM_011965	26440	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.010000	0.497512	
mm_113621.1	chr13	41625878	41626078	+	1	NA	NA	NA	19762	NM_001163572	621976	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.010000	0.393035	23(TCCTCTTTAAGC,-,0.00)
mm_73055.1	chr8	94377775	94377975	+	1	NA	NA	NA	-8625	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.020000	0.572139	
mm_56471.1	chr6	99028173	99028373	-	1	NA	NA	NA	25	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.175000	0.805970	
mm_162947.1	chr11	3330657	3330857	+	1	NA	NA	NA	26	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.020000	0.557214	
mm_155803.1	chrX	99042903	99043103	+	1	NA	NA	NA	422	NM_199018	236920	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	0.060000	0.626866	
mm_63556.1	chr7	128077722	128077922	+	1	NA	NA	NA	15182	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.000000	0.308458	
mm_126203.1	chr15	78877463	78877663	+	1	NA	NA	NA	373	NM_145929	106039	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	0.150000	0.766169	
mm_45878.1	chr5	88328185	88328385	-	1	NA	NA	NA	10973	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.015000	0.487562	
mm_167867.1	chrX	23232306	23232506	+	1	NA	NA	NA	34396	NM_001310466	67455	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	0.005000	0.432836	
mm_121648.1	chr14	9634281	9634481	-	1	NA	NA	NA	-249714	NR_030680	100042415	Mm.235938	NR_030680		Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.000000	0.437811	-57(TCTTTTATAGCA,+,0.00)
mm_27994.1	chr3	82425064	82425264	-	1	NA	NA	NA	67092	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0.005000	0.452736	
mm_47238.1	chr5	121452390	121452590	-	1	NA	NA	NA	-16	NM_026129	67397	Mm.154570	NM_026129	ENSMUSG00000029616	Erp29	1200015M03Rik|2810446M09Rik|AW209030|Erp28|Erp31|PDI-Db	endoplasmic reticulum protein 29	protein-coding	0.160000	0.776119	
mm_124524.1	chr14	122106865	122107065	-	1	NA	NA	NA	9	NR_015586	319727	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	0.120000	0.691542	
mm_21495.1	chr2	163397873	163398073	-	1	NA	NA	NA	0	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	0.030000	0.606965	
mm_18902.1	chr2	76718032	76718232	-	1	NA	NA	NA	42817	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.015000	0.427861	
mm_16006.1	chr2	167363532	167363732	+	1	NA	NA	NA	-14454	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.010000	0.592040	
mm_46047.1	chr5	92065538	92065738	-	1	NA	NA	NA	17279	NM_001080797	23881	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.015000	0.373134	
mm_73193.1	chr8	95496358	95496558	+	1	NA	NA	NA	-7638	NM_009974	13000	Mm.51136	NM_009974	ENSMUSG00000046707	Csnk2a2	1110035J23Rik|C77789|CK2	casein kinase 2, alpha prime polypeptide	protein-coding	0.005000	0.522388	
mm_58107.1	chr6	137649153	137649353	-	1	NA	NA	NA	32	NM_001271588	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.190000	0.835821	
mm_20780.1	chr2	143988880	143989080	-	1	NA	NA	NA	22283	NM_133626	81910	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.000000	0.532338	
mm_77878.1	chr9	7184441	7184641	+	1	NA	NA	NA	-25	NM_029775	76863	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0.100000	0.626866	
mm_101464.1	chr11	30471758	30471958	-	1	NA	NA	NA	-29	NM_001100394	75087	Mm.159422	NM_001100394	ENSMUSG00000040919	4930505A04Rik	-	RIKEN cDNA 4930505A04 gene	protein-coding	0.040000	0.577114	
mm_113213.1	chr13	25151634	25151834	+	1	NA	NA	NA	95730	NM_177577	195208	Mm.284719	NM_177577	ENSMUSG00000035910	Dcdc2a	AW492955|Dcdc2|RU2	doublecortin domain containing 2a	protein-coding	0.005000	0.472637	
mm_114916.1	chr13	95021745	95021945	+	1	NA	NA	NA	45501	NM_172590	218460	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.045000	0.527363	
mm_31427.1	chr4	48084132	48084332	+	1	NA	NA	NA	32986	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.025000	0.477612	
mm_12097.1	chr2	60921105	60921305	+	1	NA	NA	NA	-39767	NM_001141931	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.005000	0.467662	
mm_135006.1	chr16	32246813	32247013	-	1	NA	NA	NA	112	NM_173439	268882	Mm.256137	NM_173439	ENSMUSG00000035764	Fbxo45	2610017J04Rik|AI463119|BC026799	F-box protein 45	protein-coding	0.165000	0.805970	
mm_149169.1	chr19	9083543	9083743	+	1	NA	NA	NA	4313	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.015000	0.537313	
mm_65561.1	chr7	27166649	27166849	-	1	NA	NA	NA	53	NM_053208	112406	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0.170000	0.766169	
mm_12295.1	chr2	69071302	69071502	+	1	NA	NA	NA	-64398	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.020000	0.447761	
mm_26914.1	chr3	20132415	20132615	-	1	NA	NA	NA	22601	NM_013755	27357	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|Gyg1	glycogenin	protein-coding	0.000000	0.273632	
mm_5184.1	chr1	13023194	13023394	-	1	NA	NA	NA	-32159	NM_172841	240726	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0.010000	0.378109	-92(AGGTTTAAAAAG,-,0.00),-90(GTTTAAAAAGGC,+,0.00),-81(GGCTTTTTAAAA,-,0.00),-79(CTTTTTAAAAAG,+,0.00),-79(CTTTTTAAAAAG,-,0.00)
mm_112193.1	chr12	113425387	113425587	-	1	NA	NA	NA	-64078	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.542289	
mm_27720.1	chr3	68902687	68902887	-	1	NA	NA	NA	33201	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.085000	0.666667	
mm_129569.1	chr15	79658771	79658971	-	1	NA	NA	NA	85	NM_029407	75729	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	0.065000	0.572139	
mm_30574.1	chr4	3938796	3938996	+	1	NA	NA	NA	8	NM_001285804	66433	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	0.085000	0.681592	
mm_114299.1	chr13	59419279	59419479	+	1	NA	NA	NA	125072	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.020000	0.592040	
mm_164640.1	chr17	34804307	34804507	-	1	NA	NA	NA	19	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.015000	0.601990	-35(GGCTATAAAAGG,-,0.00)
mm_82154.1	chr9	123776407	123776607	+	1	NA	NA	NA	9296	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.000000	0.378109	37(GTCTATTAAAGT,-,0.00)
mm_40483.1	chr5	54377461	54377661	+	1	NA	NA	NA	27569	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA	0.005000	0.427861	
mm_80252.1	chr9	72749330	72749530	+	1	NA	NA	NA	-57844	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.020000	0.512438	
mm_98986.1	chr11	98744114	98744314	+	1	NA	NA	NA	2429	NM_001313983	21833	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.005000	0.597015	
mm_59847.1	chr7	29783893	29784093	+	1	NA	NA	NA	-797	NM_013705	22693	Mm.292690	NM_013705	ENSMUSG00000047473	Zfp30	2610306P15Rik|Zfp-30	zinc finger protein 30	protein-coding	0.045000	0.626866	
mm_16504.1	chr2	181287692	181287892	+	1	NA	NA	NA	174	NM_198169	229004	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.185000	0.820896	
mm_143635.1	chr17	78985316	78985516	-	1	NA	NA	NA	23089	NM_001171005	75292	Mm.252776	NM_029239	ENSMUSG00000024070	Prkd3	4930557O20Rik|5730497N19Rik|PKD3|Pkcnu|Prkcn	protein kinase D3	protein-coding	0.000000	0.323383	-61(CCTTTTAAATAT,+,0.00)
mm_160515.1	chr9	22036313	22036513	-	1	NA	NA	NA	15610	NM_010487	15571	Mm.390167	NM_010487	ENSMUSG00000003410	Elavl3	2600009P04Rik|Huc|PLE21|mHuC	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 3 (Hu antigen C)	protein-coding	0.005000	0.522388	
mm_163286.1	chr11	117991755	117991955	-	1	NA	NA	NA	4998	NM_133757	74451	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.025000	0.562189	
mm_10707.1	chr2	22774227	22774427	+	1	NA	NA	NA	0	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.060000	0.631841	
mm_172278.1	chr6	87119424	87119624	-	1	NA	NA	NA	14778	NM_001167937	52372	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0.015000	0.457711	
mm_137385.1	chr17	25786499	25786699	+	1	NA	NA	NA	19	NM_001165929	381077	Mm.328867	NM_001165929	ENSMUSG00000071202	Ccdc78	Gm938|Gm950	coiled-coil domain containing 78	protein-coding	0.010000	0.527363	
mm_47496.1	chr5	124030920	124031120	-	1	NA	NA	NA	1240	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.015000	0.487562	
mm_96249.1	chr11	62575815	62576015	+	1	NA	NA	NA	1429	NM_011706	22368	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0.055000	0.597015	
mm_99593.1	chr11	104310386	104310586	+	1	NA	NA	NA	79050	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.015000	0.577114	
mm_11077.1	chr2	27677298	27677498	+	1	NA	NA	NA	197	NM_011305	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.175000	0.820896	
mm_78224.1	chr9	21588091	21588291	+	1	NA	NA	NA	-4531	NM_178619	69773	Mm.39704	NM_178619	ENSMUSG00000048429	Timm29	1810026J23Rik	translocase of inner mitochondrial membrane 29	protein-coding	0.030000	0.582090	
mm_46782.1	chr5	112577063	112577263	-	1	NA	NA	NA	35	NM_001253917	56747	Mm.143742	NM_019982	ENSMUSG00000058153	Sez6l	AI843918|AIG1|AW539724|Acig1|BSRP-B|mKIAA0927	seizure related 6 homolog like	protein-coding	0.115000	0.736318	
mm_99736.1	chr11	106374703	106374903	+	1	NA	NA	NA	-23	NM_029345	75573	Mm.159539	NM_029345	ENSMUSG00000009210	Prr29	2310007L24Rik	proline rich 29	protein-coding	0.025000	0.616915	
mm_120261.1	chr14	63054989	63055189	+	1	NA	NA	NA	16	NR_046019	72609	Mm.387101	NR_046019		2700070H01Rik	-	RIKEN cDNA 2700070H01 gene	ncRNA	0.025000	0.601990	
mm_73201.1	chr8	95678111	95678311	+	1	NA	NA	NA	-24826	NM_001195006	234593	Mm.29846	NM_145602	ENSMUSG00000036564	Ndrg4	D8Bwg1337e|Ndr1-rs|Ndr4|R74996|SMAP-8	N-myc downstream regulated gene 4	protein-coding	0.110000	0.721393	-6(TTTTTTAAACCC,+,0.00)
mm_112755.1	chr13	19342633	19342833	+	1	NA	NA	NA	53080	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.378109	
mm_64529.1	chr7	143979324	143979524	+	1	NA	NA	NA	-29830	NR_037292	100526562		NR_037292	ENSMUSG00000093221	Mir3105	mmu-mir-3105	microRNA 3105	ncRNA	0.045000	0.606965	
mm_116003.1	chr13	24603763	24603963	-	1	NA	NA	NA	904	NR_024599	76024	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347|OTTMUSG00000000601|OTTMUSG00000000602	X-linked lymphocyte-regulated 5 pseudogene	pseudo	0.020000	0.497512	
mm_163249.1	chr11	106788845	106789045	+	1	NA	NA	NA	-307	NM_177088	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.085000	0.621891	
mm_70874.1	chr8	25100988	25101188	+	1	NA	NA	NA	723	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.015000	0.512438	
mm_97303.1	chr11	76622239	76622439	+	1	NA	NA	NA	-44600	NM_198894	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.095000	0.711443	
mm_172606.1	chr8	15519943	15520143	+	1	NA	NA	NA	462390	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.070000	0.507463	-30(AACTTTAAATGG,-,0.00)
mm_91455.1	chr10	34019533	34019733	-	1	NA	NA	NA	-17	NM_025614	66521	Mm.28528	NM_025614	ENSMUSG00000019782	Rwdd1	0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1	RWD domain containing 1	protein-coding	0.130000	0.706468	
mm_172773.1	chr8	94434304	94434504	+	1	NA	NA	NA	699	NR_015514	320377	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0.055000	0.611940	
mm_51916.1	chr6	91233700	91233900	+	1	NA	NA	NA	21036	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.015000	0.626866	
mm_100908.1	chr11	6228331	6228531	-	1	NA	NA	NA	1814	NM_207242	237636	Mm.212492	NM_207242	ENSMUSG00000020447	Npc1l1	9130221N23Rik|Gm243	NPC1-like 1	protein-coding	0.025000	0.552239	
mm_145630.1	chr18	61109746	61109946	+	1	NA	NA	NA	4274	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.025000	0.537313	
mm_63969.1	chr7	139944573	139944773	+	1	NA	NA	NA	817	NM_009482	22286	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	0.075000	0.626866	
mm_67583.1	chr7	82971322	82971522	-	1	NA	NA	NA	-31	NR_045855	71285	Mm.76818	NR_045855	ENSMUSG00000109106	4933430H16Rik	-	RIKEN cDNA 4933430H16 gene	ncRNA	0.025000	0.537313	
mm_20943.1	chr2	151542248	151542448	-	1	NA	NA	NA	-135	NR_126058	14225	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.070000	0.552239	
mm_41387.1	chr5	90768540	90768740	+	1	NA	NA	NA	122	NM_023785	57349	Mm.293614	NM_023785	ENSMUSG00000029372	Ppbp	2400003M24Rik|AI854500|CTAP3|CTAPIII|Cxcl7|LA-PF4|LDGF|MDGF|NAP-2|NAP-2-L1|Scyb7|TGB|TGB1|THBGB1|b-TG1|beta-TG	pro-platelet basic protein	protein-coding	0.015000	0.547264	
mm_98853.1	chr11	97662925	97663125	+	1	NA	NA	NA	-387	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.080000	0.601990	
mm_134670.1	chr16	22265835	22266035	-	1	NA	NA	NA	70	NM_001330554	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding	0.110000	0.656716	
mm_9325.1	chr1	171844080	171844280	-	1	NA	NA	NA	4483	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.447761	-34(GGGTAGAAAAGC,-,0.00),82(GTCCTTAAGAGG,-,0.00)
mm_52482.1	chr6	114315632	114315832	+	1	NA	NA	NA	33097	NM_178703	232333	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.025000	0.497512	-71(CTTTTTATGCTG,+,0.00)
mm_148823.1	chr19	6306446	6306646	+	1	NA	NA	NA	89	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.130000	0.756219	
mm_167176.1	chr7	140096635	140096835	+	1	NA	NA	NA	3339	NM_009475	22264	Mm.439707	NM_009475	ENSMUSG00000025467	Prap1	Upa	proline-rich acidic protein 1	protein-coding	0.025000	0.572139	-35(CTCTTGAAAAGG,-,0.00)
mm_121195.1	chr14	103051308	103051508	+	1	NA	NA	NA	4396	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.025000	0.532338	
mm_12511.1	chr2	72009297	72009497	+	1	NA	NA	NA	28182	NM_019688	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.000000	0.313433	
mm_32757.1	chr4	116687155	116687355	+	1	NA	NA	NA	-1233	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.000000	0.442786	
mm_127844.1	chr15	7115699	7115899	-	1	NA	NA	NA	-13773	NM_001113386	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.000000	0.412935	
mm_157986.1	chrX	94212550	94212750	-	1	NA	NA	NA	1	NM_012010	26905	Mm.218851	NM_012010	ENSMUSG00000035150	Eif2s3x	AA409828|AA547477|AI314668|Eif-2gx	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	protein-coding	0.065000	0.606965	
mm_70094.1	chr7	142658662	142658862	-	1	NA	NA	NA	42	NM_010514	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.055000	0.601990	
mm_115023.1	chr13	98904097	98904297	+	1	NA	NA	NA	-13155	NM_001048267	238799	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.045000	0.447761	
mm_71961.1	chr8	70527906	70528106	+	1	NA	NA	NA	160	NM_001199631	14232	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|Fkbp38	FK506 binding protein 8	protein-coding	0.115000	0.766169	
mm_66252.1	chr7	35586843	35587043	-	1	NA	NA	NA	696	NM_178263	245886	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding	0.050000	0.592040	
mm_3852.1	chr1	160906316	160906516	+	1	NA	NA	NA	5	NM_001024952	381305	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	0.100000	0.711443	
mm_6609.1	chr1	75479034	75479234	-	1	NA	NA	NA	337	NM_001001565	74241	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0.130000	0.791045	
mm_79066.1	chr9	46233184	46233384	+	1	NA	NA	NA	2015	NM_001289833	11814	Mm.390161	NM_023114	ENSMUSG00000032081	Apoc3	apo-CIII|apoC-III	apolipoprotein C-III	protein-coding	0.010000	0.512438	
mm_27224.1	chr3	36053422	36053622	-	1	NA	NA	NA	25	NM_178418	241943	Mm.269018	NM_178418	ENSMUSG00000047696	Ccdc144b	-	coiled-coil domain containing 144B	protein-coding	0.035000	0.512438	
mm_44847.1	chr5	34187783	34187983	-	1	NA	NA	NA	-173	NM_010753	17122	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.045000	0.577114	
mm_167874.1	chrX	36894003	36894203	+	1	NA	NA	NA	8796	NM_029891	77286	Mm.21649	NM_029891	ENSMUSG00000044149	Nkrf	9430034D17Rik|AW124770|C80287	NF-kappaB repressing factor	protein-coding	0.000000	0.393035	
mm_127168.1	chr15	98740182	98740382	+	1	NA	NA	NA	-12084	NM_024169	66120	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.005000	0.547264	
mm_130979.1	chr15	103344547	103344747	-	1	NA	NA	NA	-4561	NM_013866	29813	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.010000	0.532338	
mm_74906.1	chr8	25203809	25204009	-	1	NA	NA	NA	-2367	NM_177089	320165	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.005000	0.487562	
mm_169187.1	chr13	66027387	66027587	-	1	NA	NA	NA	-85966	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.015000	0.517413	
mm_149261.1	chr19	10535340	10535540	+	1	NA	NA	NA	10196	NM_172302	269061	Mm.490260	NM_172302	ENSMUSG00000034820	Cpsf7	5730453I16Rik|AL022757|C330017N18Rik	cleavage and polyadenylation specific factor 7	protein-coding	0.010000	0.562189	
mm_2171.1	chr1	88259333	88259533	+	1	NA	NA	NA	9975	NR_040291	78605	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.005000	0.522388	
mm_142178.1	chr17	36271030	36271230	-	1	NA	NA	NA	303	NM_178281	79263	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0.115000	0.701493	
mm_80965.1	chr9	103111704	103111904	+	1	NA	NA	NA	-270	NM_173781	270192	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.165000	0.781095	
mm_24207.1	chr3	88621180	88621380	+	1	NA	NA	NA	-114	NM_001198913	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.145000	0.741294	
mm_120624.1	chr14	70457449	70457649	+	1	NA	NA	NA	32	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.065000	0.582090	
mm_64428.1	chr7	142577528	142577728	+	1	NA	NA	NA	-481	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.035000	0.557214	-78(CTCTCTAAGAGC,-,0.00)
mm_88817.1	chr10	80798827	80799027	+	1	NA	NA	NA	192	NM_013651	20222	Mm.358633	NM_013651	ENSMUSG00000020211	Sf3a2	66kDa|AW047242|PRP11|SFA66|Sap62	splicing factor 3a, subunit 2	protein-coding	0.125000	0.691542	
mm_39596.1	chr5	23501908	23502108	+	1	NA	NA	NA	67579	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.020000	0.527363	
mm_133733.1	chr16	93833174	93833374	+	1	NA	NA	NA	1153	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.025000	0.393035	
mm_23253.1	chr3	51232820	51233020	+	1	NA	NA	NA	8473	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.015000	0.412935	-38(CTTTTTATGGAC,+,0.00)
mm_129332.1	chr15	77813120	77813320	-	1	NA	NA	NA	28955	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.015000	0.482587	
mm_96875.1	chr11	70214859	70215059	+	1	NA	NA	NA	1049	NM_153081	216867	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0.060000	0.616915	
mm_133127.1	chr16	65815931	65816131	+	1	NA	NA	NA	398	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.015000	0.477612	
mm_67037.1	chr7	67044239	67044439	-	1	NA	NA	NA	178119	NR_131044	76628	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0.035000	0.522388	
mm_88918.1	chr10	81182963	81183163	+	1	NA	NA	NA	56	NM_001190474	13144	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.120000	0.671642	
mm_71314.1	chr8	43308354	43308554	+	1	NA	NA	NA	-1445	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.005000	0.482587	
mm_118399.1	chr13	119399645	119399845	-	1	NA	NA	NA	9266	NM_008710	18115	Mm.132584	NM_008710	ENSMUSG00000025453	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.015000	0.383085	
mm_45167.1	chr5	51457988	51458188	-	1	NA	NA	NA	95833	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.015000	0.398010	
mm_12131.1	chr2	61651971	61652171	+	1	NA	NA	NA	58974	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.000000	0.243781	40(CCATTTATGCAC,+,0.00)
mm_20468.1	chr2	129370231	129370431	-	1	NA	NA	NA	429	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.015000	0.497512	
mm_80410.1	chr9	77657297	77657497	+	1	NA	NA	NA	20665	NM_172925	244923	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0.005000	0.363184	
mm_8244.1	chr1	138582275	138582475	-	1	NA	NA	NA	37382	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.010000	0.522388	
mm_142974.1	chr17	56140221	56140421	-	1	NA	NA	NA	22	NM_001130456	20359	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0.160000	0.805970	
mm_20760.1	chr2	140773454	140773654	-	1	NA	NA	NA	-102078	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.015000	0.512438	
mm_161683.1	chr17	20285562	20285762	-	1	NA	NA	NA	-232	NM_001104568	224576	Mm.469854	NM_001104568	ENSMUSG00000091656	Vmn2r106	EG224576	vomeronasal 2, receptor 106	protein-coding	0.005000	0.353234	
mm_155328.1	chrX	65047544	65047744	+	1	NA	NA	NA	0	NM_027302	70062	Mm.45791	NM_027302	ENSMUSG00000031181	Ctag2	1700030B21Rik	cancer/testis antigen 2	protein-coding	0.020000	0.527363	
mm_61902.1	chr7	90130153	90130353	+	1	NA	NA	NA	21	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.075000	0.701493	
mm_50504.1	chr6	49036461	49036661	+	1	NA	NA	NA	43	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.040000	0.472637	
mm_122826.1	chr14	54686178	54686378	-	1	NA	NA	NA	107	NM_021437	58248	Mm.197509	NM_021437	ENSMUSG00000040822	1700123O20Rik	MNCb-2990	RIKEN cDNA 1700123O20 gene	protein-coding	0.095000	0.646766	
mm_45891.1	chr5	88564724	88564924	-	1	NA	NA	NA	-216	NM_001289774	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.110000	0.716418	
mm_79456.1	chr9	56248770	56248970	+	1	NA	NA	NA	-87800	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.015000	0.422886	-32(CTTTATATAAAC,+,0.00)
mm_124849.1	chr15	9524253	9524453	+	1	NA	NA	NA	5523	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.005000	0.412935	
mm_89750.1	chr10	99263132	99263332	+	1	NA	NA	NA	1	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.070000	0.597015	
mm_42167.1	chr5	112261491	112261691	+	1	NA	NA	NA	5771	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.010000	0.487562	
mm_149535.1	chr19	12465651	12465851	+	1	NA	NA	NA	4972	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.005000	0.487562	
mm_148614.1	chr19	5366901	5367101	+	1	NA	NA	NA	-125	NM_011793	23825	Mm.358649	NM_011793	ENSMUSG00000024844	Banf1	Baf|Bcrp1|L2bp1/Baf	barrier to autointegration factor 1	protein-coding	0.095000	0.641791	
mm_13098.1	chr2	91259741	91259941	+	1	NA	NA	NA	2512	NM_028733	80708	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	0.010000	0.527363	
mm_64339.1	chr7	142376761	142376961	+	1	NA	NA	NA	-3115	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.025000	0.492537	
mm_112574.1	chr13	13590365	13590565	+	1	NA	NA	NA	56	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.090000	0.691542	50(TCCTTTAGAGGG,+,0.00)
mm_155355.1	chrX	69360303	69360503	+	1	NA	NA	NA	72	NM_008032	14266	Mm.466576	NM_008032	ENSMUSG00000031189	Aff2	FMR2P|Fmr2|Ox19|Oxh	AF4/FMR2 family, member 2	protein-coding	0.130000	0.776119	
mm_84550.1	chr9	67573148	67573348	-	1	NA	NA	NA	-13545	NM_001081242	70549	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	0.020000	0.507463	
mm_41910.1	chr5	105591196	105591396	+	1	NA	NA	NA	71825	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.010000	0.482587	
mm_53593.1	chr6	138114999	138115199	+	1	NA	NA	NA	-25438	NM_019946	56615	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.020000	0.393035	
mm_144800.1	chr18	36109714	36109914	+	1	NA	NA	NA	3611	NR_015571	74966	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA	0.010000	0.517413	
mm_157088.1	chrX	9436563	9436763	-	1	NA	NA	NA	32661	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.015000	0.467662	
mm_83025.1	chr9	37233584	37233784	-	1	NA	NA	NA	22054	NM_020258	56857	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.030000	0.552239	
mm_60041.1	chr7	31059271	31059471	+	1	NA	NA	NA	-564	NM_144556	243914	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	0.000000	0.611940	
mm_6544.1	chr1	75128489	75128689	-	1	NA	NA	NA	5301	NM_194333	22626	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.010000	0.517413	
mm_142333.1	chr17	43538863	43539063	-	1	NA	NA	NA	4676	NM_001254953	100043332	Mm.17626	NM_001254953	ENSMUSG00000096140	Ankrd66	AU041848|D730048J04Rik|Gm4368	ankyrin repeat domain 66	protein-coding	0.010000	0.502488	
mm_75844.1	chr8	70618692	70618892	-	1	NA	NA	NA	1948	NM_153074	211228	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0.010000	0.542289	
mm_101983.1	chr11	50431205	50431405	-	1	NA	NA	NA	-194	NM_172557	216724	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	0.040000	0.422886	
mm_156510.1	chrX	150547345	150547545	+	1	NA	NA	NA	0	NR_106147	102465782		NR_106147	ENSMUSG00000099172	Mir3620	Gm27984|mmu-mir-3620	microRNA 3620	ncRNA	0.025000	0.601990	
mm_33083.1	chr4	123928209	123928409	+	1	NA	NA	NA	10876	NM_017475	54170	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.000000	0.417910	-26(TACTCTTAAAGC,-,0.00),84(CTTTTTATAACC,+,0.00)
mm_46057.1	chr5	92256199	92256399	-	1	NA	NA	NA	-3140	NM_011148	19023	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	0.025000	0.577114	
mm_57336.1	chr6	124742602	124742802	-	1	NA	NA	NA	-1623	NM_013535	14790	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.030000	0.482587	
mm_65062.1	chr7	18890263	18890463	-	1	NA	NA	NA	5673	NM_009402	21946	Mm.21855	NM_009402	ENSMUSG00000030413	Pglyrp1	PGRP|PGRP-S|Pglyrp|Tag7|Tasg7|Tnfsf3l	peptidoglycan recognition protein 1	protein-coding	0.020000	0.557214	
mm_62034.1	chr7	92129610	92129810	+	1	NA	NA	NA	-10199	NR_131016	75845	Mm.437835	NR_131016	ENSMUSG00000109382	4930567K12Rik	-	RIKEN cDNA 4930567K12 gene	ncRNA	0.000000	0.363184	
mm_66903.1	chr7	59978772	59978972	-	1	NA	NA	NA	-16	NR_028529	100217429		NR_028529		Snord64	MBII-13	small nucleolar RNA, C/D box 64	snoRNA	0.000000	0.343284	-34(TTTTTTAAAGTC,+,0.00)
mm_158562.1	chrX	150440741	150440941	-	1	NA	NA	NA	64	NM_001164686	382245	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding	0.030000	0.492537	-98(GGACTTAAAAGA,-,0.00)
mm_43933.1	chr5	145104383	145104583	+	1	NA	NA	NA	-9773	NM_023142	11867	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.030000	0.517413	
mm_149072.1	chr19	8871523	8871723	+	1	NA	NA	NA	64	NM_146093	225896	Mm.27839	NM_146093	ENSMUSG00000071655	Ubxn1	2B28|4930455J02Rik|D19Ertd721e|T25529	UBX domain protein 1	protein-coding	0.120000	0.741294	
mm_142861.1	chr17	51813729	51813929	-	1	NA	NA	NA	-1775	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.030000	0.477612	
mm_23106.1	chr3	37420204	37420404	+	1	NA	NA	NA	354	NM_021343	57815	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0.140000	0.681592	
mm_36190.1	chr4	62298164	62298364	-	1	NA	NA	NA	6717	NM_001290518	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.005000	0.457711	
mm_62397.1	chr7	101108464	101108664	+	1	NA	NA	NA	-211	NM_001146010	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.155000	0.796020	
mm_89094.1	chr10	84440738	84440938	+	1	NA	NA	NA	-367	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.140000	0.781095	
mm_14827.1	chr2	147014662	147014862	+	1	NA	NA	NA	1702	NM_011917	24128	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	0.010000	0.393035	
mm_44319.1	chr5	9725057	9725257	-	1	NA	NA	NA	195	NM_181850	108069	Mm.318966	NM_181850	ENSMUSG00000003974	Grm3	0710001G23Rik|Gprc1c|mGlu3|mGluR3	glutamate receptor, metabotropic 3	protein-coding	0.055000	0.651741	
mm_160390.1	chr8	54600748	54600948	+	1	NA	NA	NA	67	NM_133711	69281	Mm.45833	NM_133711	ENSMUSG00000031518	Spata4	1700001N01Rik|Srg2|TSARG2	spermatogenesis associated 4	protein-coding	0.040000	0.567164	
mm_131177.1	chr16	7069854	7070054	+	1	NA	NA	NA	119	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.020000	0.472637	32(CTCCATTTAAAG,-,0.00),34(CCATTTAAAGCA,+,0.00)
mm_88930.1	chr10	81257255	81257455	+	1	NA	NA	NA	56	NM_001285853	17179	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0.100000	0.696517	
mm_125450.1	chr15	51713550	51713750	+	1	NA	NA	NA	151811	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.000000	0.437811	
mm_29611.1	chr3	121263204	121263404	-	1	NA	NA	NA	12	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0.070000	0.552239	21(GGGCATATAAGA,-,0.00)
mm_33039.1	chr4	122886166	122886366	+	1	NA	NA	NA	-209	NM_001301067	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.035000	0.567164	
mm_105894.1	chr11	114960400	114960600	-	1	NA	NA	NA	-83	NM_199225	387565	Mm.351450	NM_199225	ENSMUSG00000058728	Cd300c	Clm6	CD300C molecule	protein-coding	0.000000	0.517413	
mm_149002.1	chr19	8667661	8667861	+	1	NA	NA	NA	3756	NM_001112697	12669	Mm.240607	NM_007698	ENSMUSG00000032773	Chrm1	Chrm-1|M1|M1R	cholinergic receptor, muscarinic 1, CNS	protein-coding	0.005000	0.427861	
mm_93275.1	chr10	95842810	95843010	-	1	NA	NA	NA	-97753	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.025000	0.447761	
mm_17337.1	chr2	26594839	26595039	-	1	NA	NA	NA	-3519	NR_106155	102465787		NR_106155	ENSMUSG00000105799	Mir126b	mmu-mir-126b	microRNA 126b	ncRNA	0.010000	0.582090	
mm_40636.1	chr5	64899026	64899226	+	1	NA	NA	NA	33573	NM_030682	21897	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.010000	0.422886	
mm_171041.1	chr2	96960609	96960809	-	1	NA	NA	NA	-506948	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.040000	0.621891	
mm_67940.1	chr7	100121418	100121618	-	1	NA	NA	NA	-18	NM_133692	67967	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0.105000	0.691542	
mm_395.1	chr1	34121243	34121443	+	1	NA	NA	NA	3984	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.030000	0.547264	
mm_162273.1	chr1	10335452	10335652	+	1	NA	NA	NA	-102882	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.005000	0.412935	
mm_14031.1	chr2	122152779	122152979	+	1	NA	NA	NA	5192	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.000000	0.298507	
mm_95436.1	chr11	50224654	50224854	+	1	NA	NA	NA	-581	NM_145926	103534	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0.065000	0.641791	
mm_23987.1	chr3	86143045	86143245	+	1	NA	NA	NA	-477	NM_016959	20091	Mm.391785	NM_016959	ENSMUSG00000028081	Rps3a1	Rps3a	ribosomal protein S3A1	protein-coding	0.020000	0.502488	
mm_76878.1	chr8	105579760	105579960	-	1	NA	NA	NA	-15	NM_001271806	11604	Mm.441696	NM_007427	ENSMUSG00000005705	Agrp	Agrt|Art	agouti related neuropeptide	protein-coding	0.005000	0.477612	
mm_57143.1	chr6	122633398	122633598	-	1	NA	NA	NA	7074	NM_139218	73708	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.030000	0.527363	
mm_164443.1	chr16	49855279	49855479	+	1	NA	NA	NA	-275	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.080000	0.686567	
mm_19851.1	chr2	113758547	113758747	-	1	NA	NA	NA	1	NM_011824	23892	Mm.166318	NM_011824	ENSMUSG00000074934	Grem1	Cktsf1b1|Drm|Grem|ld	gremlin 1, DAN family BMP antagonist	protein-coding	0.130000	0.686567	-33(GCATTTAAACCG,+,0.00)
mm_108412.1	chr12	81859997	81860197	+	1	NA	NA	NA	67	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	0.170000	0.815920	
mm_15628.1	chr2	162987332	162987532	+	1	NA	NA	NA	-49	NM_001291154	27219	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	0.015000	0.577114	
mm_8323.1	chr1	149449869	149450069	-	1	NA	NA	NA	472470	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.000000	0.437811	
mm_150233.1	chr19	34008158	34008358	+	1	NA	NA	NA	4	NM_001205349	240633	Mm.58924	NM_172837	ENSMUSG00000024771	Lipk	9930115F20|BC055815|Lipl2	lipase, family member K	protein-coding	0.025000	0.452736	
mm_26761.1	chr3	8666953	8667153	-	1	NA	NA	NA	-15	NM_010423	15213	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.085000	0.676617	
mm_22396.1	chr2	181234005	181234205	-	1	NA	NA	NA	7922	NM_183162	229003	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.030000	0.567164	-9(GCCTTTATATCC,+,0.00)
mm_61262.1	chr7	66079688	66079888	+	1	NA	NA	NA	139	NM_024439	109815	Mm.482127	NM_024439	ENSMUSG00000075701	Selenos	1500011E07Rik|C78786|H-4|H-47|H4|H47|Sels|Vimp	selenoprotein S	protein-coding	0.125000	0.711443	
mm_52538.1	chr6	115931808	115932008	+	1	NA	NA	NA	-19	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.050000	0.587065	-33(CACTTTATAAGG,-,0.00),-31(CTTTATAAGGGT,+,0.00)
mm_38646.1	chr4	143267804	143268004	-	1	NA	NA	NA	31660	NM_010329	14726	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding	0.015000	0.447761	
mm_94843.1	chr11	23699480	23699680	+	1	NA	NA	NA	33604	NM_028304	74467	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.000000	0.333333	
mm_68985.1	chr7	126589970	126590170	-	1	NA	NA	NA	-4253	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.010000	0.427861	
mm_46530.1	chr5	105693318	105693518	-	1	NA	NA	NA	-6551	NM_001122768	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.000000	0.432836	
mm_143091.1	chr17	57080516	57080716	-	1	NA	NA	NA	-2106	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.000000	0.547264	
mm_111969.1	chr12	109895033	109895233	-	1	NA	NA	NA	147255	NR_037233	100499517		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	0.055000	0.542289	
mm_28479.1	chr3	92429315	92429515	-	1	NA	NA	NA	-3167	NM_011477	20765	Mm.57085	NM_011477	ENSMUSG00000054215	Sprr2k	-	small proline-rich protein 2K	protein-coding	0.030000	0.477612	
mm_9558.1	chr1	173971251	173971451	-	1	NA	NA	NA	11493	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.000000	0.298507	
mm_44416.1	chr5	18005279	18005479	-	1	NA	NA	NA	42809	NM_001081143	242851	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.000000	0.507463	
mm_26432.1	chr3	142618787	142618987	+	1	NA	NA	NA	-1776	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.010000	0.412935	
mm_95397.1	chr11	49663553	49663753	+	1	NA	NA	NA	58	NM_170727	68662	Mm.22802	NM_054037	ENSMUSG00000064057	Scgb3a1	HIN-1|LuLeu2|Pnsp2|UGRP2|Utgrp2	secretoglobin, family 3A, member 1	protein-coding	0.005000	0.512438	
mm_70374.1	chr8	10006342	10006542	+	1	NA	NA	NA	-25	NM_001347309	24099	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	0.010000	0.492537	
mm_103034.1	chr11	69758089	69758289	-	1	NA	NA	NA	444	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.090000	0.641791	
mm_78922.1	chr9	45042494	45042694	+	1	NA	NA	NA	250	NM_007962	14012	Mm.33240	NM_007962	ENSMUSG00000032092	Mpzl2	Eva|Eva1	myelin protein zero-like 2	protein-coding	0.060000	0.651741	
mm_58278.1	chr6	145746172	145746372	-	1	NA	NA	NA	-62111	NM_027760	71323	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.060000	0.681592	0(CCTTTTCTGGTC,+,0.00)
mm_105833.1	chr11	113464251	113464451	-	1	NA	NA	NA	101464	NM_001166503	69806	Mm.341021	NM_027216	ENSMUSG00000041654	Slc39a11	1810074D23Rik	solute carrier family 39 (metal ion transporter), member 11	protein-coding	0.020000	0.517413	
mm_170180.1	chr17	60784005	60784205	+	1	NA	NA	NA	-1770783	NM_026497	67993	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.065000	0.646766	
mm_37596.1	chr4	126744016	126744216	-	1	NA	NA	NA	-7847	NM_198960	332937	Mm.331881	NM_198960	ENSMUSG00000042477	Tfap2e	AI505200|AP-2e|Tcfap2e	transcription factor AP-2, epsilon	protein-coding	0.000000	0.557214	
mm_112637.1	chr13	16014303	16014503	+	1	NA	NA	NA	2552	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.422886	
mm_163412.1	chr12	77418316	77418516	+	1	NA	NA	NA	8275	NM_001252616	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.010000	0.358209	
mm_137591.1	chr17	28069530	28069730	+	1	NA	NA	NA	10954	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.040000	0.636816	
mm_144260.1	chr18	11052399	11052599	+	1	NA	NA	NA	-11	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.050000	0.621891	
mm_95704.1	chr11	54438179	54438379	+	1	NA	NA	NA	100	NM_173753	216742	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.095000	0.681592	
mm_105635.1	chr11	106998356	106998556	-	1	NA	NA	NA	1069	NM_010655	16647	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.020000	0.388060	81(GTGTATAAAAAC,-,0.00)
mm_35036.1	chr4	4134103	4134303	-	1	NA	NA	NA	4242	NM_001002927	18619	Mm.475097	NM_001002927	ENSMUSG00000045573	Penk	AI326464|ENK|PPA|Penk1	preproenkephalin	protein-coding	0.045000	0.532338	
mm_171457.1	chr4	145514803	145515003	+	1	NA	NA	NA	4144	NM_001324553	101056073	Mm.276881	NM_001324553	ENSMUSG00000078503	LOC101056073	-	zinc finger protein 501-like	protein-coding	0.005000	0.527363	
mm_148284.1	chr18	82527671	82527871	-	1	NA	NA	NA	-26692	NM_001025256	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.010000	0.522388	
mm_150740.1	chr19	43782205	43782405	+	1	NA	NA	NA	-3	NM_013806	12780	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0.010000	0.417910	
mm_3148.1	chr1	135146727	135146927	+	1	NA	NA	NA	-7	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.185000	0.830846	
mm_105925.1	chr11	115062064	115062264	-	1	NA	NA	NA	-125	NM_172050	217306	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.020000	0.442786	
mm_7040.1	chr1	87101504	87101704	-	1	NA	NA	NA	2	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.005000	0.552239	-38(CCCTTTATAGCC,+,0.00)
mm_23647.1	chr3	67473351	67473551	+	1	NA	NA	NA	-9544	NM_016753	17035	Mm.2632	NM_016753	ENSMUSG00000047557	Lxn	-	latexin	protein-coding	0.005000	0.373134	
mm_171097.1	chr3	131338017	131338217	+	1	NA	NA	NA	6806	NM_028943	74442	Mm.273360	NM_028943	ENSMUSG00000050931	Sgms2	4933405A16Rik|5133401H06Rik|AI854299	sphingomyelin synthase 2	protein-coding	0.045000	0.507463	-31(TTCTATAAAAGT,-,0.00)
mm_17908.1	chr2	35315401	35315601	-	1	NA	NA	NA	21508	NM_013515	13830	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.010000	0.447761	
mm_145786.1	chr18	65143514	65143714	+	1	NA	NA	NA	-105247	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.015000	0.582090	
mm_17142.1	chr2	25095032	25095232	-	1	NA	NA	NA	73	NM_001163626	241275	Mm.218774	NM_172204	ENSMUSG00000036805	Noxa1	NY-CO-31|SDCCAG31	NADPH oxidase activator 1	protein-coding	0.025000	0.542289	
mm_132713.1	chr16	43503517	43503717	+	1	NA	NA	NA	-83421	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.010000	0.452736	
mm_58694.1	chr7	12925347	12925547	+	1	NA	NA	NA	-1969	NM_029809	381845	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0.045000	0.522388	
mm_6551.1	chr1	75133777	75133977	-	1	NA	NA	NA	13	NM_194333	22626	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.025000	0.567164	
mm_44961.1	chr5	36712011	36712211	-	1	NA	NA	NA	-16090	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.000000	0.487562	
mm_27255.1	chr3	37174576	37174776	-	1	NA	NA	NA	-48722	NM_008366	16183	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	0.010000	0.467662	
mm_40160.1	chr5	35587951	35588151	+	1	NA	NA	NA	712	NR_045807	74364	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	0.035000	0.587065	
mm_3070.1	chr1	134189627	134189827	+	1	NA	NA	NA	-3721	NM_016749	53311	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	0.005000	0.522388	
mm_59241.1	chr7	24780768	24780968	+	1	NA	NA	NA	3664	NM_007675	26366	Mm.30300	NM_007675	ENSMUSG00000054169	Ceacam10	Bgp3|Cea10	carcinoembryonic antigen-related cell adhesion molecule 10	protein-coding	0.025000	0.532338	
mm_143849.1	chr17	84145789	84145989	-	1	NA	NA	NA	42058	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.015000	0.522388	
mm_108519.1	chr12	84052052	84052252	+	1	NA	NA	NA	1	NM_134246	171281	Mm.202331	NM_134246	ENSMUSG00000021228	Acot3	AW108394|PTE-Ia|Pte2a	acyl-CoA thioesterase 3	protein-coding	0.015000	0.517413	
mm_47720.1	chr5	130002906	130003106	-	1	NA	NA	NA	-178	NM_010368	110006	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.040000	0.562189	
mm_150182.1	chr19	32642982	32643182	+	1	NA	NA	NA	23077	NM_011864	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.015000	0.432836	
mm_169344.1	chr14	15094051	15094251	-	1	NA	NA	NA	273336	NM_001195229	674895	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.015000	0.472637	
mm_30915.1	chr4	32615397	32615597	+	1	NA	NA	NA	27	NM_011997	26885	Mm.22279	NM_011997	ENSMUSG00000028282	Casp8ap2	D4Ertd659e|FLASH	caspase 8 associated protein 2	protein-coding	0.105000	0.726368	
mm_5733.1	chr1	45334529	45334729	-	1	NA	NA	NA	23091	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.005000	0.417910	
mm_71576.1	chr8	54550291	54550491	+	1	NA	NA	NA	60	NM_029569	76294	Mm.33171	NM_029569	ENSMUSG00000031519	Asb5	1110018D09Rik	ankyrin repeat and SOCs box-containing 5	protein-coding	0.020000	0.442786	
mm_1402.1	chr1	67144815	67145015	+	1	NA	NA	NA	21888	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.383085	
mm_172455.1	chr7	3579035	3579235	-	1	NA	NA	NA	37022	NM_175632	232790	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	0.005000	0.477612	
mm_98228.1	chr11	88068166	88068366	+	1	NA	NA	NA	-13	NM_016686	22344	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	0.170000	0.805970	
mm_14161.1	chr2	126606317	126606517	+	1	NA	NA	NA	12261	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.025000	0.547264	
mm_79134.1	chr9	47569121	47569321	+	1	NA	NA	NA	38869	NM_018770	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.010000	0.288557	
mm_101587.1	chr11	34681603	34681803	-	1	NA	NA	NA	102202	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.010989	0.349727	
mm_168704.1	chr11	98033049	98033249	-	1	NA	NA	NA	6225	NM_009078	19921	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0.015000	0.422886	
mm_16088.1	chr2	168771640	168771840	+	1	NA	NA	NA	-4539	NM_175303	99377	Mm.434054	NM_175303	ENSMUSG00000027547	Sall4	5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20	sal-like 4 (Drosophila)	protein-coding	0.000000	0.388060	
mm_70515.1	chr8	12947849	12948049	+	1	NA	NA	NA	8	NR_128567	104797311		NR_128567	ENSMUSG00000105030	Gm38671	Mir9768|mmu-mir-9768	predicted gene, 38671	ncRNA	0.055000	0.611940	
mm_133290.1	chr16	77484864	77485064	+	1	NA	NA	NA	-113972	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.005000	0.333333	20(TACTTTATAAGA,-,0.00)
mm_168378.1	chr1	122086525	122086725	+	1	NA	NA	NA	-518645	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	0.050000	0.651741	
mm_8893.1	chr1	162898285	162898485	-	1	NA	NA	NA	327	NM_018881	55990	Mm.10929	NM_018881	ENSMUSG00000040170	Fmo2	2310008D08Rik|2310042I22Rik|AW107733	flavin containing monooxygenase 2	protein-coding	0.005000	0.442786	
mm_104898.1	chr11	99610331	99610531	-	1	NA	NA	NA	-242	NM_001099346	100041488	Mm.465212	NM_001099346	ENSMUSG00000058725	Gm11937	-	predicted gene 11937	protein-coding	0.015000	0.388060	-32(CCATAAATAGCA,+,0.00)
mm_49462.1	chr6	29419177	29419377	+	1	NA	NA	NA	-13876	NM_001081185	68794	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	0.020000	0.502488	
mm_152794.1	chr19	21472423	21472623	-	1	NA	NA	NA	138	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.115000	0.716418	
mm_65708.1	chr7	28378009	28378209	-	1	NA	NA	NA	1119	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.055000	0.606965	
mm_146481.1	chr18	89206466	89206666	+	1	NA	NA	NA	9139	NM_001039149	225825	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.000000	0.373134	
mm_160403.1	chr8	71290153	71290353	+	1	NA	NA	NA	17539	NM_001142323	17925	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0.045000	0.616915	
mm_34114.1	chr4	139199180	139199380	+	1	NA	NA	NA	5169	NM_001271405	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.020000	0.532338	
mm_107849.1	chr12	69373400	69373600	+	1	NA	NA	NA	1350	NM_007481	11845	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.015000	0.417910	
mm_12514.1	chr2	72054566	72054766	+	1	NA	NA	NA	49	NM_001204166	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.015000	0.437811	-63(TCTTTTAGACCA,+,0.00)
mm_76635.1	chr8	92355401	92355601	-	1	NA	NA	NA	619	NR_110452	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	0.010000	0.358209	
mm_97617.1	chr11	78952874	78953074	+	1	NA	NA	NA	27683	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.040000	0.616915	
mm_124755.1	chr15	6643624	6643824	+	1	NA	NA	NA	63877	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.030000	0.422886	
mm_129236.1	chr15	76617038	76617238	-	1	NA	NA	NA	-286	NM_028064	72027	Mm.276829	NM_028064	ENSMUSG00000063354	Slc39a4	1600025H15Rik|AU041686|AWMS2|ZIP4	solute carrier family 39 (zinc transporter), member 4	protein-coding	0.020000	0.522388	
mm_106324.1	chr11	118303777	118303977	-	1	NA	NA	NA	-13633	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.015000	0.537313	
mm_109020.1	chr12	103532395	103532595	+	1	NA	NA	NA	-70	NM_028980	74521	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	0.150000	0.800995	
mm_19029.1	chr2	76969076	76969276	-	1	NA	NA	NA	13371	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.025000	0.527363	
mm_46522.1	chr5	105345830	105346030	-	1	NA	NA	NA	542	NM_001039647	634650	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	0.000000	0.353234	
mm_105209.1	chr11	102156277	102156477	-	1	NA	NA	NA	30	NM_029649	76547	Mm.46529	NM_029649	ENSMUSG00000020921	Tmem101	2610511E22Rik	transmembrane protein 101	protein-coding	0.065000	0.577114	
mm_112974.1	chr13	21287279	21287479	+	1	NA	NA	NA	5307	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.015000	0.512438	-58(CAGTCTTTAAGG,-,0.00),-56(GTCTTTAAGGGG,-,0.00),-55(TCTTTAAGGGGG,+,0.00)
mm_120310.1	chr14	63142226	63142426	+	1	NA	NA	NA	19864	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.472637	
mm_127434.1	chr15	101270082	101270282	+	1	NA	NA	NA	3336	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.045000	0.606965	
mm_142763.1	chr17	49479676	49479876	-	1	NA	NA	NA	51412	NM_020042	56738	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.015000	0.631841	
mm_13497.1	chr2	107010960	107011160	+	1	NA	NA	NA	-36663	NM_001025102	212772	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	0.060000	0.621891	
mm_27459.1	chr3	52104951	52105151	-	1	NA	NA	NA	-45	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.110000	0.726368	
mm_149082.1	chr19	8904901	8905101	+	1	NA	NA	NA	6944	NM_008060	14376	Mm.3196	NM_008060	ENSMUSG00000071650	Ganab	AU042638|G2an|GluII|mKIAA0088	alpha glucosidase 2 alpha neutral subunit	protein-coding	0.045000	0.557214	
mm_5529.1	chr1	37957659	37957859	-	1	NA	NA	NA	0	NM_027111	69541	Mm.389117	NM_027111	ENSMUSG00000026085	Lyg1	2300002O18Rik	lysozyme G-like 1	protein-coding	0.020000	0.427861	-33(CCCTATATAAGG,+,0.00),-33(CCCTATATAAGG,-,0.00)
mm_132097.1	chr16	31325163	31325363	+	1	NA	NA	NA	-10455	NM_001301354	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.035000	0.542289	
mm_169198.1	chr13	66244041	66244241	-	1	NA	NA	NA	130688	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.010000	0.522388	
mm_150097.1	chr19	29470109	29470309	+	1	NA	NA	NA	51778	NR_015567	77779	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.000000	0.487562	-96(GCCTTTAAAAAC,-,0.00),-95(CCTTTAAAAACA,+,0.00)
mm_43784.1	chr5	142453875	142454075	+	1	NA	NA	NA	-9956	NM_172725	231855	Mm.78250	NM_172725	ENSMUSG00000039623	Ap5z1	C330006K01Rik	adaptor-related protein complex 5, zeta 1 subunit	protein-coding	0.040000	0.621891	
mm_106030.1	chr11	116077391	116077591	-	1	NA	NA	NA	470	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.035000	0.641791	
mm_58788.1	chr7	16130084	16130284	+	1	NA	NA	NA	358	NM_148946	110891	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	0.045000	0.676617	
mm_139796.1	chr17	66005576	66005776	+	1	NA	NA	NA	-54489	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.025000	0.497512	
mm_75077.1	chr8	33862940	33863140	-	1	NA	NA	NA	66823	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.030000	0.442786	
mm_50330.1	chr6	48411519	48411719	+	1	NA	NA	NA	16033	NM_001347153	77827	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	0.000000	0.502488	
mm_119558.1	chr14	48670210	48670410	+	1	NA	NA	NA	1022	NR_029384	606497	Mm.165199	NR_029384	ENSMUSG00000098682	Otx2os1	-	orthodenticle homeobox 2 opposite strand 1	ncRNA	0.005000	0.442786	
mm_105698.1	chr11	108226909	108227109	-	1	NA	NA	NA	116879	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.005000	0.358209	
mm_141769.1	chr17	34283082	34283282	-	1	NA	NA	NA	4589	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.010000	0.537313	
mm_8751.1	chr1	160307329	160307529	-	1	NA	NA	NA	-11457	NR_035448	100316784		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	0.010000	0.517413	
mm_159710.1	chr5	31048830	31049030	-	1	NA	NA	NA	-6	NM_001177622	330064	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	0.030000	0.517413	
mm_77282.1	chr8	116732763	116732963	-	1	NA	NA	NA	128	NM_029441	75796	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.160000	0.711443	
mm_98385.1	chr11	94209784	94209984	+	1	NA	NA	NA	-1570	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.025000	0.487562	
mm_37120.1	chr4	116651516	116651716	-	1	NA	NA	NA	58	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.060000	0.621891	
mm_19330.1	chr2	90577737	90577937	-	1	NA	NA	NA	2810	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.015000	0.517413	
mm_15416.1	chr2	156840011	156840211	+	1	NA	NA	NA	104	NM_173396	228839	Mm.315625	NM_173396	ENSMUSG00000062175	Tgif2	4921501K24|5730599O09Rik|C80753|C81206	TGFB-induced factor homeobox 2	protein-coding	0.100000	0.721393	
mm_163435.1	chr12	85455070	85455270	-	1	NA	NA	NA	-18731	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.035000	0.611940	
mm_69135.1	chr7	127042286	127042486	-	1	NA	NA	NA	34	NM_145588	110033	Mm.286488	NM_145588	ENSMUSG00000030677	Kif22	AU021460|C81217|Kid|Kif22a	kinesin family member 22	protein-coding	0.085000	0.611940	
mm_48415.1	chr5	140321455	140321655	-	1	NA	NA	NA	-3	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.105000	0.631841	
mm_90756.1	chr10	5550456	5550656	-	1	NA	NA	NA	136	NM_153399	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.085000	0.671642	
mm_11357.1	chr2	30919420	30919620	+	1	NA	NA	NA	-16223	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.000000	0.388060	
mm_109946.1	chr12	11326382	11326582	-	1	NA	NA	NA	26595	NR_106136	102465775		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.015000	0.452736	
mm_145060.1	chr18	40333137	40333337	+	1	NA	NA	NA	74876	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.010000	0.358209	
mm_19113.1	chr2	79908296	79908496	-	1	NA	NA	NA	3	NM_001009979	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.005000	0.383085	9(TGGCATAAAAGA,-,0.00)
mm_82695.1	chr9	22376203	22376403	-	1	NA	NA	NA	2920	NR_030448	751551		NR_030448	ENSMUSG00000076117	Mir680-2	Mirn680-2	microRNA 680-2	ncRNA	0.015000	0.497512	
mm_44604.1	chr5	25100811	25101011	-	1	NA	NA	NA	-64	NR_027851	67261	Mm.461781	NM_026059	ENSMUSG00000043833	2900005J15Rik	-	RIKEN cDNA 2900005J15 gene	ncRNA	0.130000	0.776119	
mm_131993.1	chr16	25048075	25048275	+	1	NA	NA	NA	-11464	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.000000	0.383085	
mm_154790.1	chrX	13071919	13072119	+	1	NA	NA	NA	521	NM_009481	22284	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	0.080000	0.706468	
mm_15877.1	chr2	164836916	164837116	+	1	NA	NA	NA	3243	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.030000	0.552239	
mm_31641.1	chr4	59581463	59581663	+	1	NA	NA	NA	0	NM_001301367	72479	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0.100000	0.651741	
mm_62462.1	chr7	101581125	101581325	+	1	NA	NA	NA	-64	NM_019915	11872	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	0.015000	0.427861	
mm_18805.1	chr2	73910932	73911132	-	1	NA	NA	NA	294	NM_175015	228033	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	0.095000	0.691542	
mm_50862.1	chr6	55336197	55336397	+	1	NA	NA	NA	-2	NM_007472	11826	Mm.18625	NM_007472	ENSMUSG00000004655	Aqp1	CHIP28	aquaporin 1	protein-coding	0.035000	0.666667	
mm_99749.1	chr11	106685967	106686167	+	1	NA	NA	NA	29214	NM_001305158	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.015000	0.467662	-67(TGCTTTTAAAGC,-,0.00),-66(GCTTTTAAAGCC,+,0.00)
mm_4633.1	chr1	179668226	179668426	+	1	NA	NA	NA	95	NM_178653	109232	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	0.125000	0.731343	
mm_70512.1	chr8	12931634	12931834	+	1	NA	NA	NA	15841	NM_178076	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.035000	0.567164	
mm_153286.1	chr19	37291585	37291785	-	1	NA	NA	NA	-27590	NR_040298	77059	Mm.251476	NR_040298		4931408D14Rik	-	RIKEN cDNA 4931408D14 gene	ncRNA	0.005000	0.477612	
mm_110416.1	chr12	46784216	46784416	-	1	NA	NA	NA	34459	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.000000	0.303483	
mm_8325.1	chr1	149840874	149841074	-	1	NA	NA	NA	81465	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.015000	0.502488	
mm_99276.1	chr11	101260496	101260696	+	1	NA	NA	NA	29	NM_175638	69847	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	0.095000	0.731343	
mm_72372.1	chr8	81015103	81015303	+	1	NA	NA	NA	-297	NM_027554	74841	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	0.085000	0.601990	
mm_44273.1	chr5	5694386	5694586	-	1	NA	NA	NA	82	NM_028734	74051	Mm.274956	NM_028734	ENSMUSG00000015653	Steap2	4921538B17Rik|AI930049|AW045895|IPCA-1|IPCA1|PCANAP1|STAMP1|STMP	six transmembrane epithelial antigen of prostate 2	protein-coding	0.045000	0.557214	
mm_49239.1	chr6	17306294	17306494	+	1	NA	NA	NA	59	NM_007616	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.040000	0.597015	
mm_111030.1	chr12	79172343	79172543	-	1	NA	NA	NA	15	NM_016800	53612	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	0.100000	0.726368	
mm_15684.1	chr2	163630835	163631035	+	1	NA	NA	NA	-13915	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.015000	0.447761	
mm_78760.1	chr9	43303161	43303361	+	1	NA	NA	NA	-7502	NM_023655	72169	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	0.010000	0.472637	
mm_99363.1	chr11	101682763	101682963	+	1	NA	NA	NA	17322	NM_025404	80981	Mm.266840	NM_025404	ENSMUSG00000034936	Arl4d	1110036H21Rik|ARL6|AW456149|Arf4l|Arfl4|Arl5	ADP-ribosylation factor-like 4D	protein-coding	0.010000	0.432836	
mm_20481.1	chr2	129630537	129630737	-	1	NA	NA	NA	37468	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.005000	0.562189	
mm_31148.1	chr4	43392007	43392207	+	1	NA	NA	NA	10125	NM_001037709	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.010000	0.383085	
mm_62218.1	chr7	98371641	98371841	+	1	NA	NA	NA	-10413	NM_001168539	244152	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.010000	0.587065	-35(CATTATAAAAGG,-,0.00)
mm_132014.1	chr16	25865991	25866191	+	1	NA	NA	NA	64175	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.035000	0.507463	
mm_72926.1	chr8	91106458	91106658	+	1	NA	NA	NA	27469	NM_001302337	14339	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	0.020000	0.487562	
mm_104673.1	chr11	97663588	97663788	-	1	NA	NA	NA	276	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.125000	0.766169	
mm_170224.1	chr17	80567961	80568161	+	1	NA	NA	NA	-4227	NM_001033443	381113	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.050000	0.567164	-27(GAGTTTATAAGA,-,0.00)
mm_155369.1	chrX	71364670	71364870	+	1	NA	NA	NA	10	NM_001313706	53332	Mm.219672	NM_016985	ENSMUSG00000015214	Mtmr1	AW049210	myotubularin related protein 1	protein-coding	0.140000	0.756219	
mm_78753.1	chr9	42465934	42466134	+	1	NA	NA	NA	6192	NM_173038	272589	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0.015000	0.502488	
mm_71471.1	chr8	46534883	46535083	+	1	NA	NA	NA	-17086	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.015000	0.527363	
mm_10778.1	chr2	24322293	24322493	+	1	NA	NA	NA	-14467	NM_031167	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.010000	0.497512	
mm_69580.1	chr7	135704040	135704240	-	1	NA	NA	NA	12239	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.015000	0.422886	
mm_24467.1	chr3	90654098	90654298	+	1	NA	NA	NA	-104	NM_199422	381493	Mm.291525	NM_199422	ENSMUSG00000063767	S100a7a	AY465109|Gm1020|S100A7L1|S100A7f|S100a15|S100a15a|S100a17l1	S100 calcium binding protein A7A	protein-coding	0.010000	0.507463	
mm_150653.1	chr19	41917689	41917889	+	1	NA	NA	NA	5918	NM_023418	18648	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	0.025000	0.557214	
mm_144237.1	chr18	10617946	10618146	+	1	NA	NA	NA	250	NM_009226	20641	Mm.603	NM_009226	ENSMUSG00000002477	Snrpd1	AA407109|AL023031|SMD1	small nuclear ribonucleoprotein D1	protein-coding	0.135000	0.786070	
mm_75175.1	chr8	36827899	36828099	-	1	NA	NA	NA	-94945	NM_001194941	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.000000	0.328358	-61(GGCTATAAAAAT,-,0.00)
mm_49351.1	chr6	21986307	21986507	+	1	NA	NA	NA	497	NM_001081351	214642	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.055000	0.532338	-84(GCTTTAAAACCG,+,0.00)
mm_113862.1	chr13	48261015	48261215	+	1	NA	NA	NA	-312	NM_031166	15904	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding	0.120000	0.681592	
mm_80730.1	chr9	93853798	93853998	+	1	NA	NA	NA	684183	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0.000000	0.437811	
mm_137450.1	chr17	26532869	26533069	+	1	NA	NA	NA	-24497	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.020000	0.606965	
mm_14023.1	chr2	122150919	122151119	+	1	NA	NA	NA	3332	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.025000	0.452736	
mm_130178.1	chr15	93398097	93398297	-	1	NA	NA	NA	93	NM_026025	67197	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	0.165000	0.761194	
mm_95399.1	chr11	49720012	49720212	+	1	NA	NA	NA	-7390	NM_212484	104625	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0.005000	0.358209	-1(TCTTATATAGGT,+,0.00)
mm_141967.1	chr17	35121329	35121529	-	1	NA	NA	NA	0	NM_001303445	13001	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	0.080000	0.616915	
mm_146868.1	chr18	25168573	25168773	-	1	NA	NA	NA	204	NM_001142698	66648	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.140000	0.761194	
mm_82635.1	chr9	21963480	21963680	-	1	NA	NA	NA	-4	NM_010149	13857	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	0.010000	0.626866	
mm_162730.1	chr10	43438374	43438574	+	1	NA	NA	NA	-40666	NM_199028	331623	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.020000	0.532338	
mm_14234.1	chr2	127590651	127590851	+	1	NA	NA	NA	3325	NM_029963	77721	Mm.274601	NM_029963	ENSMUSG00000027374	Mrps5	1620401I16Rik|AI850294	mitochondrial ribosomal protein S5	protein-coding	0.010000	0.393035	-34(CTCTTTAAACGC,+,0.00)
mm_8259.1	chr1	138876841	138877041	-	1	NA	NA	NA	9	NR_138576	75546	Mm.71176	NR_138576	ENSMUSG00000099808	1700019P21Rik	-	RIKEN cDNA 1700019P21 gene	ncRNA	0.030000	0.487562	
mm_152896.1	chr19	24862166	24862366	-	1	NA	NA	NA	-424	NM_175013	226041	Mm.105222	NM_175013	ENSMUSG00000041731	Pgm5	4833423B07|9530034F03Rik|D830025G17|aciculin	phosphoglucomutase 5	protein-coding	0.000000	0.552239	
mm_48400.1	chr5	140201065	140201265	-	1	NA	NA	NA	120387	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.000000	0.542289	
mm_163523.1	chr12	116047719	116047919	+	1	NA	NA	NA	95	NM_019565	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0.075000	0.572139	
mm_85797.1	chr9	109902244	109902444	-	1	NA	NA	NA	12701	NR_106057	102465660		NR_106057	ENSMUSG00000098490	Mir7089	Gm27418|mmu-mir-7089	microRNA 7089	ncRNA	0.005000	0.527363	
mm_38175.1	chr4	135263935	135264135	-	1	NA	NA	NA	8725	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.015000	0.487562	
mm_153057.1	chr19	32155258	32155458	-	1	NA	NA	NA	-52218	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.000000	0.432836	
mm_14610.1	chr2	136532177	136532377	+	1	NA	NA	NA	-44	NM_175667	319196	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0.055000	0.656716	
mm_15297.1	chr2	155382976	155383176	+	1	NA	NA	NA	1220	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.005000	0.532338	
mm_135425.1	chr16	45372533	45372733	-	1	NA	NA	NA	36420	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.015000	0.497512	
mm_112288.1	chr12	114479414	114479614	-	1	NA	NA	NA	-10048	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.000000	0.412935	
mm_141614.1	chr17	32810694	32810894	-	1	NA	NA	NA	-863	NM_183177	240063	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	0.005000	0.432836	-32(CTTCTTATAGAC,+,0.00)
mm_56326.1	chr6	92481544	92481744	-	1	NA	NA	NA	-252	NM_001134460	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.005000	0.422886	
mm_139746.1	chr17	63498922	63499122	+	1	NA	NA	NA	1558	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.060000	0.686567	
mm_141014.1	chr17	25015679	25015879	-	1	NA	NA	NA	-307	NM_134126	106633	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	0.140000	0.706468	
mm_45789.1	chr5	87482181	87482381	-	1	NA	NA	NA	-23	NM_001024148	552899	Mm.26794	NM_001024148	ENSMUSG00000029268	Ugt2a2	-	UDP glucuronosyltransferase 2 family, polypeptide A2	protein-coding	0.015000	0.338308	-34(GTCTATATAAGT,-,0.00),31(TGGTTTTAAAAG,-,0.00)
mm_76267.1	chr8	84044889	84045089	-	1	NA	NA	NA	-10	NM_173184	212108	Mm.261583	NM_173184	ENSMUSG00000045232	Rln3	M3|insl7	relaxin 3	protein-coding	0.040000	0.631841	
mm_130253.1	chr15	96642092	96642292	-	1	NA	NA	NA	151	NM_001166456	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.060000	0.582090	
mm_7461.1	chr1	120476578	120476778	-	1	NA	NA	NA	28406	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.045000	0.497512	
mm_85554.1	chr9	106685827	106686027	-	1	NA	NA	NA	25	NR_104459	21767	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.130000	0.726368	
mm_39164.1	chr4	155624506	155624706	-	1	NA	NA	NA	149	NR_040441	100502734	Mm.306018	NR_040441	ENSMUSG00000086682	Gm16023	OTTMUSG00000029160	predicted gene 16023	ncRNA	0.095000	0.611940	
mm_72615.1	chr8	84615391	84615591	+	1	NA	NA	NA	47361	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.025000	0.407960	
mm_24040.1	chr3	87846683	87846883	+	1	NA	NA	NA	28	NM_021309	27371	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	0.005000	0.452736	
mm_119503.1	chr14	47380253	47380453	+	1	NA	NA	NA	6493	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.005000	0.616915	
mm_116400.1	chr13	41358898	41359098	-	1	NA	NA	NA	3	NM_017464	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.075000	0.641791	
mm_142516.1	chr17	46264843	46265043	-	1	NA	NA	NA	10778	NM_001111142	224813	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0.030000	0.562189	
mm_18187.1	chr2	45112025	45112225	-	1	NA	NA	NA	-135	NR_110571	433424	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|OTTMUSG00000012358|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0.010000	0.398010	
mm_5183.1	chr1	12992639	12992839	-	1	NA	NA	NA	-1604	NM_172841	240726	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0.060000	0.666667	
mm_7495.1	chr1	121346104	121346304	-	1	NA	NA	NA	-13615	NM_178082	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.005000	0.507463	
mm_151610.1	chr19	3897006	3897206	-	1	NA	NA	NA	8124	NM_016921	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.025000	0.567164	
mm_61850.1	chr7	88297111	88297311	+	1	NA	NA	NA	19126	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.010000	0.477612	
mm_3955.1	chr1	164063196	164063396	+	1	NA	NA	NA	1220	NM_001164059	20343	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.000000	0.303483	16(TCTTTTAAGGAC,+,0.00)
mm_154522.1	chrM	13257	13457	-	1	NA	NA	NA	NA	NA									0.005000	0.363184	
mm_165198.1	chr2	32586953	32587153	+	1	NA	NA	NA	-25	NM_001276425	20448	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0.095000	0.746269	
mm_40933.1	chr5	76588726	76588926	+	1	NA	NA	NA	-2888	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.165000	0.746269	
mm_88935.1	chr10	81268139	81268339	+	1	NA	NA	NA	67	NM_018758	57267	Mm.293931	NM_018758	ENSMUSG00000004931	Apba3	AW208791|Mint-3|X11gamma|lin-10|mint3	amyloid beta (A4) precursor protein-binding, family A, member 3	protein-coding	0.075000	0.611940	
mm_149519.1	chr19	12440309	12440509	+	1	NA	NA	NA	12504	NM_019540	56093	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.005000	0.457711	
mm_71941.1	chr8	70373450	70373650	+	1	NA	NA	NA	2	NM_016685	12845	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	0.095000	0.716418	
mm_154486.1	chrM	4678	4878	-	1	NA	NA	NA	NA	NA									0.005000	0.293532	-18(GAGTATAAAAGA,-,0.00)
mm_124671.1	chr15	6392402	6392602	+	1	NA	NA	NA	5754	NM_001310446	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.010000	0.368159	-68(TTCTTTAAAGAG,-,0.00)
mm_55330.1	chr6	56157087	56157287	-	1	NA	NA	NA	139672	NM_011153	19051	Mm.42096	NM_011153	ENSMUSG00000002930	Ppp1r17	G-substrate|Gsbs|Ppp1r2	protein phosphatase 1, regulatory subunit 17	protein-coding	0.005000	0.477612	
mm_32286.1	chr4	102991726	102991926	+	1	NA	NA	NA	31	NM_001163768	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.000000	0.472637	
mm_110182.1	chr12	27337502	27337702	-	1	NA	NA	NA	5116	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.005000	0.353234	
mm_54956.1	chr6	48689252	48689452	-	1	NA	NA	NA	4774	NM_174990	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.000000	0.437811	
mm_14294.1	chr2	128863860	128864060	+	1	NA	NA	NA	28	NM_024237	70370	Mm.5107	NM_024237	ENSMUSG00000027386	Fbln7	1600015H20Rik|AI464334|TM14	fibulin 7	protein-coding	0.080000	0.691542	
mm_102242.1	chr11	55021739	55021939	-	1	NA	NA	NA	11632	NR_138556	11749	Mm.265347	NM_013472	ENSMUSG00000018340	Anxa6	AW107198|Anx6|AnxVI|Cabm|Camb	annexin A6	protein-coding	0.005000	0.517413	
mm_167665.1	chr9	72536312	72536512	+	1	NA	NA	NA	4172	NM_001033536	319758	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	0.020000	0.303483	
mm_167202.1	chr7	143165946	143166146	+	1	NA	NA	NA	58792	NM_008434	16535	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0.005000	0.532338	
mm_162525.1	chr1	160987027	160987227	+	1	NA	NA	NA	8521	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.030000	0.592040	
mm_144006.1	chr17	88113294	88113494	-	1	NA	NA	NA	-12118	NM_001190356	225058	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.015000	0.452736	-77(CTTTTTATAAGA,+,0.00)
mm_125193.1	chr15	32691725	32691925	+	1	NA	NA	NA	-228898	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0.010000	0.467662	
mm_116496.1	chr13	44947044	44947244	-	1	NA	NA	NA	54952	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.010000	0.457711	8(CTTTATAGAGGC,+,0.00)
mm_146375.1	chr18	82584781	82584981	+	1	NA	NA	NA	30373	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.025000	0.582090	17(GCTTTTAAGAAC,+,0.00)
mm_48546.1	chr5	142905607	142905807	-	1	NA	NA	NA	1047	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.125000	0.666667	
mm_109388.1	chr12	109738819	109739019	+	1	NA	NA	NA	-200	NR_030437	751524		NR_030437	ENSMUSG00000070136	Mir496a	Mir496|Mirn496|mir-496a|mmu-mir-496|mmu-mir-496a	microRNA 496a	ncRNA	0.010000	0.537313	
mm_124929.1	chr15	12179627	12179827	+	1	NA	NA	NA	8235	NR_035443	100316684		NR_035443	ENSMUSG00000084592	Mir1898	Mirn1898|mmu-mir-1898	microRNA 1898	ncRNA	0.015000	0.472637	
mm_18306.1	chr2	53191102	53191302	-	1	NA	NA	NA	-15	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.090000	0.681592	
mm_46532.1	chr5	105696067	105696267	-	1	NA	NA	NA	-3802	NM_001122768	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.010000	0.457711	
mm_12952.1	chr2	89911249	89911449	+	1	NA	NA	NA	-18462	NM_146978	258980	Mm.223370	NM_146978	ENSMUSG00000049149	Olfr1258	MOR232-3	olfactory receptor 1258	protein-coding	0.010000	0.447761	-34(TTGTATAAAAAC,-,0.00)
mm_102058.1	chr11	52253388	52253588	-	1	NA	NA	NA	21493	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.005000	0.507463	-74(CCTCTTAAGGTG,+,0.00)
mm_63883.1	chr7	137429695	137429895	+	1	NA	NA	NA	-7853	NM_023140	30926	Mm.267692	NM_023140	ENSMUSG00000031068	Glrx3	PICOT|Txnl2	glutaredoxin 3	protein-coding	0.020000	0.467662	
mm_58256.1	chr6	145075997	145076197	-	1	NA	NA	NA	60	NM_007532	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.060000	0.587065	
mm_11359.1	chr2	30927559	30927759	+	1	NA	NA	NA	-24362	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.015000	0.542289	
mm_61630.1	chr7	80246332	80246532	+	1	NA	NA	NA	56	NM_177765	269954	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	0.120000	0.676617	
mm_57167.1	chr6	122801633	122801833	-	1	NA	NA	NA	-18451	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.150000	0.716418	
mm_118457.1	chr14	8615811	8616011	+	1	NA	NA	NA	50379	NM_028934	74430	Mm.271901	NM_028934	ENSMUSG00000021747	4930452B06Rik	4933406L09Rik|AI854000	RIKEN cDNA 4930452B06 gene	protein-coding	0.025000	0.507463	-33(CTCTTTTAAAAC,-,0.00),-32(TCTTTTAAAACC,+,0.00),-31(CTTTTAAAACCG,+,0.00)
mm_44805.1	chr5	33270551	33270751	-	1	NA	NA	NA	4353	NM_001310535	13016	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	0.010000	0.522388	
mm_24218.1	chr3	88647322	88647522	+	1	NA	NA	NA	5720	NM_181817	242093	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0.010000	0.427861	
mm_37526.1	chr4	124752078	124752278	-	1	NA	NA	NA	8397	NR_030480	735263		NR_030480	ENSMUSG00000076119	Mir698	Mirn698|mir-698|mmu-mir-698	microRNA 698	ncRNA	0.030000	0.557214	
mm_30060.1	chr3	137564304	137564504	-	1	NA	NA	NA	-11782	NM_177665	229862	Mm.246591	NM_177665	ENSMUSG00000055138	Gm4861	9230109N16|EG229862	predicted gene 4861	protein-coding	0.020000	0.462687	
mm_142698.1	chr17	47834449	47834649	-	1	NA	NA	NA	142	NM_001109973	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.085000	0.671642	
mm_12758.1	chr2	79255431	79255631	+	1	NA	NA	NA	105	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.065000	0.641791	
mm_159721.1	chr5	34420738	34420938	+	1	NA	NA	NA	50905	NM_001243123	231128	Mm.286885	NM_001030306	ENSMUSG00000037210	Fam193a	-	family with sequence similarity 193, member A	protein-coding	0.035000	0.532338	
mm_68317.1	chr7	106352581	106352781	-	1	NA	NA	NA	-28153	NR_030720	668128	Mm.484022	NR_030720		Gm8989	EG668128|Gm21911	very large inducible GTPase 1 pseudogene	pseudo	0.000000	0.412935	
mm_62541.1	chr7	102299448	102299648	+	1	NA	NA	NA	31724	NM_009287	20866	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0.000000	0.233831	
mm_127493.1	chr15	101373249	101373449	+	1	NA	NA	NA	-3224	NM_028770	74127	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0.015000	0.572139	
mm_139729.1	chr17	57477112	57477312	+	1	NA	NA	NA	68102	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.000000	0.437811	
mm_21600.1	chr2	164237807	164238007	-	1	NA	NA	NA	434	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.025000	0.427861	
mm_9948.1	chr1	190979049	190979249	-	1	NA	NA	NA	147	NR_027352	226841	Mm.22856	NM_144879	ENSMUSG00000037568	Vash2	B130052G07Rik	vasohibin 2	protein-coding	0.120000	0.686567	
mm_35532.1	chr4	41314615	41314815	-	1	NA	NA	NA	186	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.090000	0.631841	
mm_78047.1	chr9	14643552	14643752	+	1	NA	NA	NA	-28652	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.025000	0.522388	
mm_67256.1	chr7	75641825	75642025	-	1	NA	NA	NA	186391	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.015000	0.492537	
mm_103232.1	chr11	70681670	70681870	-	1	NA	NA	NA	6335	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.020000	0.537313	
mm_20616.1	chr2	131855327	131855527	-	1	NA	NA	NA	4320	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	0.005000	0.457711	
mm_22088.1	chr2	168767044	168767244	-	1	NA	NA	NA	57	NM_201395	99377	Mm.434054	NM_175303	ENSMUSG00000027547	Sall4	5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20	sal-like 4 (Drosophila)	protein-coding	0.040000	0.497512	
mm_6212.1	chr1	66837265	66837465	-	1	NA	NA	NA	-19770	NM_001122738	68691	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.015000	0.398010	
mm_157672.1	chrX	59134333	59134533	-	1	NA	NA	NA	3	NM_010200	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding	0.130000	0.756219	
mm_29580.1	chr3	117321663	117321863	-	1	NA	NA	NA	39113	NM_177664	229791	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	0.015000	0.462687	
mm_49237.1	chr6	17281234	17281434	+	1	NA	NA	NA	149	NM_016900	12390	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	0.095000	0.706468	
mm_50031.1	chr6	41130063	41130263	+	1	NA	NA	NA	-94654	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.452736	
mm_72829.1	chr8	88263073	88263273	+	1	NA	NA	NA	-9230	NM_007406	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.020000	0.398010	
mm_98814.1	chr11	97309506	97309706	+	1	NA	NA	NA	-6110	NM_025927	67036	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.025000	0.592040	
mm_50706.1	chr6	52158342	52158542	+	1	NA	NA	NA	-82	NR_131181	105242658	Mm.372521	NR_131181	ENSMUSG00000087658	Hotairm1	Gm15051|Hoxaas1|OTTMUSG00000018870	Hoxa transcript antisense RNA, myeloid-specific 1	ncRNA	0.110000	0.681592	3(GCATTTAAATCC,+,0.00)
mm_121214.1	chr14	103054505	103054705	+	1	NA	NA	NA	7593	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.030000	0.577114	
mm_58822.1	chr7	16700722	16700922	+	1	NA	NA	NA	-21107	NM_011927	26368	Mm.27096	NM_011927	ENSMUSG00000007209	Ceacam9	AA410097|AW545709|Cea-5|Cea5|mmCGM8	carcinoembryonic antigen-related cell adhesion molecule 9	protein-coding	0.025000	0.467662	
mm_21071.1	chr2	152830137	152830337	-	1	NA	NA	NA	480	NM_001289716	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.015000	0.432836	
mm_50043.1	chr6	41151081	41151281	+	1	NA	NA	NA	-115672	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.442786	
mm_87754.1	chr10	60277900	60278100	+	1	NA	NA	NA	372	NM_001146121	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.045000	0.636816	
mm_45442.1	chr5	67425543	67425743	-	1	NA	NA	NA	2156	NM_001164806	666938	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.005000	0.393035	
mm_7208.1	chr1	93076132	93076332	-	1	NA	NA	NA	6248	NM_001294150	16560	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.015000	0.552239	
mm_68390.1	chr7	109516605	109516805	-	1	NA	NA	NA	-2490	NM_011975	26451	Mm.305750	NM_011975	ENSMUSG00000046364	Rpl27a	L27'|L27A|L29	ribosomal protein L27A	protein-coding	0.010000	0.482587	
mm_170594.1	chr19	5802096	5802296	-	1	NA	NA	NA	476	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.040000	0.407960	
mm_17752.1	chr2	32716649	32716849	-	1	NA	NA	NA	-3777	NR_039536	100628606		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0.025000	0.522388	
mm_104449.1	chr11	95040425	95040625	-	1	NA	NA	NA	846	NM_133667	18604	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	0.015000	0.562189	
mm_124774.1	chr15	7140432	7140632	+	1	NA	NA	NA	-10	NM_013584	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.015000	0.577114	
mm_157202.1	chrX	12457197	12457397	-	1	NA	NA	NA	-102301	NR_045321	100043946	Mm.211985	NR_045321	ENSMUSG00000087591	Gm14635	OTTMUSG00000017536	predicted gene 14635	ncRNA	0.020000	0.502488	
mm_50080.1	chr6	41458830	41459030	+	1	NA	NA	NA	0	NM_053243	114228	Mm.449428	NM_053243	ENSMUSG00000062751	Prss1	Try-1|Try1|Trygn16	protease, serine 1 (trypsin 1)	protein-coding	0.000000	0.547264	-34(GGGTATAAAGGC,-,0.00)
mm_60837.1	chr7	45721108	45721308	+	1	NA	NA	NA	-12	NM_001033170	73813	Mm.322591	NM_001033170	ENSMUSG00000054161	Fam83e	4930403C10Rik	family with sequence similarity 83, member E	protein-coding	0.030000	0.631841	
mm_110772.1	chr12	70346761	70346961	-	1	NA	NA	NA	753	NM_001286386	94090	Mm.184012	NM_053167	ENSMUSG00000021071	Trim9	-	tripartite motif-containing 9	protein-coding	0.085000	0.676617	
mm_34225.1	chr4	141004994	141005194	+	1	NA	NA	NA	-5330	NM_001161799	17150	Mm.7386	NM_008546	ENSMUSG00000060572	Mfap2	AI893631|Magp|Magp1	microfibrillar-associated protein 2	protein-coding	0.040000	0.616915	
mm_64150.1	chr7	141327761	141327961	+	1	NA	NA	NA	-136	NM_001282076	54006	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	deformed epidermal autoregulatory factor 1 (Drosophila)	protein-coding	0.080000	0.552239	
mm_130198.1	chr15	94587986	94588186	-	1	NA	NA	NA	1738	NM_008971	19230	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0.010000	0.447761	-6(CCTTTTAAACTG,+,0.00)
mm_43328.1	chr5	135009566	135009766	+	1	NA	NA	NA	210	NR_033794	68758	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.075000	0.651741	
mm_148137.1	chr18	76044182	76044382	-	1	NA	NA	NA	54189	NR_045365	73009	Mm.443541	NR_045365		2900057B20Rik	-	RIKEN cDNA 2900057B20 gene	ncRNA	0.000000	0.482587	
mm_68209.1	chr7	104400698	104400898	-	1	NA	NA	NA	-42152	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.005000	0.422886	
mm_53069.1	chr6	124914578	124914778	+	1	NA	NA	NA	-2973	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.000000	0.532338	
mm_85255.1	chr9	99304655	99304855	-	1	NA	NA	NA	53775	NM_177775	272636	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0.000000	0.472637	
mm_11941.1	chr2	52868334	52868534	+	1	NA	NA	NA	10566	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.010000	0.457711	
mm_18563.1	chr2	65238949	65239149	-	1	NA	NA	NA	-423	NM_027225	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.110000	0.736318	
mm_26841.1	chr3	14611163	14611363	-	1	NA	NA	NA	-7	NM_001099674	69126	Mm.389020	NM_001099674	ENSMUSG00000078784	1810022K09Rik	AI746582|AL023036	RIKEN cDNA 1810022K09 gene	protein-coding	0.065000	0.592040	
mm_65063.1	chr7	18890321	18890521	-	1	NA	NA	NA	5731	NM_009402	21946	Mm.21855	NM_009402	ENSMUSG00000030413	Pglyrp1	PGRP|PGRP-S|Pglyrp|Tag7|Tasg7|Tnfsf3l	peptidoglycan recognition protein 1	protein-coding	0.025000	0.562189	
mm_118995.1	chr14	28505726	28505926	+	1	NA	NA	NA	353	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.135000	0.686567	
mm_45226.1	chr5	53421263	53421463	-	1	NA	NA	NA	-134416	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.005000	0.472637	
mm_169263.1	chr13	83631567	83631767	+	1	NA	NA	NA	58060	NM_001347569	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.015000	0.452736	
mm_103737.1	chr11	80063319	80063519	-	1	NA	NA	NA	17572	NM_001277106	54394	Mm.272093	NM_018776	ENSMUSG00000017561	Crlf3	BB164954|Creme9|Cytor4	cytokine receptor-like factor 3	protein-coding	0.005000	0.373134	
mm_163723.1	chr13	113614117	113614317	+	1	NA	NA	NA	4347	NM_130796	170625	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.030000	0.482587	
mm_143432.1	chr17	70851125	70851325	-	1	NA	NA	NA	-15	NM_009372	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.075000	0.701493	
mm_166496.1	chr5	151488384	151488584	+	1	NA	NA	NA	81980	NR_131166	100042166	Mm.443286	NR_131166	ENSMUSG00000097321	Gm3704	-	predicted gene 3704	ncRNA	0.000000	0.313433	
mm_122810.1	chr14	54577451	54577651	-	1	NA	NA	NA	110	NM_010590	16475	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	0.115000	0.716418	
mm_129091.1	chr15	75921150	75921350	-	1	NA	NA	NA	310	NM_025412	66194	Mm.250599	NM_025412	ENSMUSG00000022571	Pycrl	1110058B13Rik|2700073G24Rik	pyrroline-5-carboxylate reductase-like	protein-coding	0.050000	0.577114	15(CTCTATTAAGGC,-,0.00)
mm_137425.1	chr17	26252849	26253049	+	1	NA	NA	NA	39	NR_037905	66978	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	0.095000	0.631841	
mm_107432.1	chr12	35925566	35925766	+	1	NA	NA	NA	45	NM_207531	403205	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0.030000	0.482587	-12(GCTTATAAATCC,+,0.00)
mm_151413.1	chr19	56703384	56703584	+	1	NA	NA	NA	-18888	NM_007419	11554	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.025000	0.567164	
mm_38602.1	chr4	141859561	141859761	-	1	NA	NA	NA	-13302	NM_001033875	76701	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	0.050000	0.616915	
mm_97368.1	chr11	77521085	77521285	+	1	NA	NA	NA	6068	NM_026185	67477	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	0.000000	0.348259	
mm_100714.1	chr11	3863622	3863822	-	1	NA	NA	NA	181	NM_152818	74309	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	0.100000	0.646766	
mm_139878.1	chr17	70748213	70748413	+	1	NA	NA	NA	98464	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.035000	0.487562	-45(CCTTTTAAATCC,+,0.00)
mm_142441.1	chr17	45572401	45572601	-	1	NA	NA	NA	760	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.070000	0.646766	
mm_28519.1	chr3	92586103	92586303	-	1	NA	NA	NA	2821	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.000000	0.407960	
mm_62998.1	chr7	120739819	120740019	+	1	NA	NA	NA	362	NM_177697	233813	Mm.389939	NM_177697	ENSMUSG00000030889	Vwa3a	E030013G06Rik	von Willebrand factor A domain containing 3A	protein-coding	0.005000	0.507463	
mm_170974.1	chr2	64313489	64313689	+	1	NA	NA	NA	-215551	NM_001267847	60344	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.040000	0.616915	
mm_91522.1	chr10	37138707	37138907	-	1	NA	NA	NA	119	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.030000	0.383085	
mm_162238.1	chrX	154579262	154579462	-	1	NA	NA	NA	-32	NM_001037167	434881	Mm.357614	NM_001037167	ENSMUSG00000072888	Samt2	EG434881|Gm5647	spermatogenesis associated multipass transmembrane protein 2	protein-coding	0.010000	0.363184	
mm_61971.1	chr7	90457180	90457380	+	1	NA	NA	NA	-72	NM_025460	66271	Mm.28963	NM_025460	ENSMUSG00000030615	Tmem126a	1810020E01Rik	transmembrane protein 126A	protein-coding	0.080000	0.636816	
mm_102635.1	chr11	62544720	62544920	-	1	NA	NA	NA	-5559	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.005000	0.457711	
mm_65279.1	chr7	24355717	24355917	-	1	NA	NA	NA	6593	NM_029806	76942	Mm.261468	NM_029806	ENSMUSG00000030484	Lypd5	2210003I03Rik	Ly6/Plaur domain containing 5	protein-coding	0.020000	0.537313	
mm_75327.1	chr8	43142934	43143134	-	1	NA	NA	NA	-1548	NM_177742	244448	Mm.64542	NM_177742	ENSMUSG00000031651	Triml1	4933403D14|BC050188	tripartite motif family-like 1	protein-coding	0.005000	0.368159	
mm_16269.1	chr2	173659753	173659953	+	1	NA	NA	NA	8	NM_024436	19334	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	0.115000	0.741294	
mm_138803.1	chr17	38816335	38816535	+	1	NA	NA	NA	176988	NM_001177586	100126768	Mm.471528	NM_001177586	ENSMUSG00000092342	Esp31	Gm20516	exocrine gland secreted peptide 31	protein-coding	0.010000	0.328358	
mm_170366.1	chr1	85272283	85272483	+	1	NA	NA	NA	-1817	NM_001037909	620078	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik|OTTMUSG00000029174	RIKEN cDNA C130026I21 gene	protein-coding	0.020000	0.552239	
mm_6562.1	chr1	75141698	75141898	-	1	NA	NA	NA	570	NM_026977	69171	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0.085000	0.636816	28(GCTTATAAACGC,+,0.00)
mm_111857.1	chr12	107945474	107945674	-	1	NA	NA	NA	57840	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.005000	0.373134	
mm_97134.1	chr11	75172350	75172550	+	1	NA	NA	NA	-938	NR_029794	387208		NR_029794	ENSMUSG00000065590	Mir212	Mirn212|mir-212|mmu-mir-212	microRNA 212	ncRNA	0.120000	0.641791	-34(CACTATAAATAG,-,0.00),-32(CTATAAATAGCC,+,0.00),78(GCCTATAAAAGC,-,0.00)
mm_34086.1	chr4	138832570	138832770	+	1	NA	NA	NA	794	NM_001082531	18780	Mm.4675	NM_011108	ENSMUSG00000058908	Pla2g2a	EF|Mom1|Pla2|sPLA2|sPla2-IIA	phospholipase A2, group IIA (platelets, synovial fluid)	protein-coding	0.010000	0.572139	
mm_7195.1	chr1	92993502	92993702	-	1	NA	NA	NA	-12732	NM_177587	208760	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0.005000	0.447761	
mm_87819.1	chr10	60306881	60307081	+	1	NA	NA	NA	22520	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.005000	0.512438	
mm_125121.1	chr15	30172560	30172760	+	1	NA	NA	NA	67	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.190000	0.825871	
mm_40024.1	chr5	33368606	33368806	+	1	NA	NA	NA	-9990	NM_001081101	71101	Mm.132178	NM_001081101	ENSMUSG00000037355	Uvssa	4933407H18Rik|D330017J19Rik|Kiaa1530|mKIAA1530	UV stimulated scaffold protein A	protein-coding	0.005000	0.492537	
mm_68124.1	chr7	102151318	102151518	-	1	NA	NA	NA	-34705	NM_001081424	504186	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	0.000000	0.323383	
mm_100155.1	chr11	116198778	116198978	+	1	NA	NA	NA	23	NM_027107	69535	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	0.130000	0.751244	
mm_118108.1	chr13	103920970	103921170	-	1	NA	NA	NA	-484	NM_001005868	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.130000	0.771144	
mm_162336.1	chr1	45349501	45349701	+	1	NA	NA	NA	38063	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.005000	0.283582	
mm_143205.1	chr17	62815984	62816184	-	1	NA	NA	NA	65233	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.000000	0.313433	-80(TCTTTTCAAGGC,+,0.00)
mm_6520.1	chr1	74438797	74438997	-	1	NA	NA	NA	29513	NM_009509	22349	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.010000	0.363184	
mm_170314.1	chr18	36560915	36561115	+	1	NA	NA	NA	412	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.110000	0.681592	
mm_114748.1	chr13	84244012	84244212	+	1	NA	NA	NA	21816	NM_175187	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	0.000000	0.303483	
mm_40408.1	chr5	53059082	53059282	+	1	NA	NA	NA	9829	NM_011402	20531	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	0.015000	0.527363	
mm_61339.1	chr7	68279099	68279299	+	1	NA	NA	NA	-2605	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.015000	0.562189	
mm_99951.1	chr11	112786772	112786972	+	1	NA	NA	NA	4662	NM_011448	20682	Mm.286407	NM_011448	ENSMUSG00000000567	Sox9	2010306G03Rik|AV220920|mKIAA4243	SRY (sex determining region Y)-box 9	protein-coding	0.005000	0.273632	4(CTGTCTTTAAGG,-,0.00)
mm_137696.1	chr17	29032573	29032773	+	1	NA	NA	NA	13	NR_036613	20383	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0.075000	0.597015	-34(TGCTATAAATAG,-,0.00)
mm_43169.1	chr5	127302509	127302709	+	1	NA	NA	NA	-20986	NR_038128	67351	Mm.320172	NR_038127	ENSMUSG00000087104	Tmem132cos	1700085B03Rik	transmembrane protein 132C, opposite strand	ncRNA	0.005000	0.422886	
mm_52207.1	chr6	100839036	100839236	+	1	NA	NA	NA	5498	NM_182939	232314	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	0.010000	0.502488	
mm_163964.1	chr14	54966370	54966570	-	1	NA	NA	NA	137	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.010000	0.567164	
mm_155445.1	chrX	73494969	73495169	+	1	NA	NA	NA	-8017	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.005000	0.467662	
mm_61980.1	chr7	90887502	90887702	+	1	NA	NA	NA	-203184	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.005000	0.517413	
mm_77994.1	chr9	8859231	8859431	+	1	NA	NA	NA	-40502	NM_008829	18667	Mm.12798	NM_008829	ENSMUSG00000031870	Pgr	9930019P03Rik|BB114106|ENSMUSG00000074510|NR3C3|PR|PR-A|PR-B	progesterone receptor	protein-coding	0.010000	0.407960	
mm_168598.1	chr1	173942391	173942591	-	1	NA	NA	NA	1	NM_001302649	15950	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Mndal	interferon activated gene 203	protein-coding	0.005000	0.437811	
mm_70663.1	chr8	14881543	14881743	+	1	NA	NA	NA	-6893	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.020000	0.532338	
mm_116503.1	chr13	44982897	44983097	-	1	NA	NA	NA	19099	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.015000	0.482587	
mm_64897.1	chr7	15950202	15950402	-	1	NA	NA	NA	-4194	NM_133831	68077	Mm.277634	NM_133831	ENSMUSG00000041560	Gltscr2	5330430H08Rik|9430097C02Rik|AU041936|AW536441|PICT-1|R74911	glioma tumor suppressor candidate region gene 2	protein-coding	0.055000	0.597015	
mm_69534.1	chr7	135694350	135694550	-	1	NA	NA	NA	21929	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.492537	
mm_26448.1	chr3	142637325	142637525	+	1	NA	NA	NA	-13479	NR_105802	102465200		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.015000	0.432836	
mm_156819.1	chrX	164140371	164140571	+	1	NA	NA	NA	-9	NM_027286	70008	Mm.13451	NM_027286	ENSMUSG00000015405	Ace2	2010305L05Rik	angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	protein-coding	0.000000	0.328358	
mm_88008.1	chr10	67096940	67097140	+	1	NA	NA	NA	-52	NM_178606	28193	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.170000	0.850746	
mm_99838.1	chr11	109269692	109269892	+	1	NA	NA	NA	28389	NM_001165934	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0.040000	0.532338	
mm_21969.1	chr2	167302116	167302316	-	1	NA	NA	NA	46962	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.040000	0.517413	40(GTGTCTTAAAGC,-,0.00)
mm_13157.1	chr2	92541078	92541278	+	1	NA	NA	NA	-51028	NR_106080	102466819		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	0.015000	0.492537	
mm_75531.1	chr8	57320253	57320453	-	1	NA	NA	NA	506	NR_110474	102636514		NR_110474	ENSMUSG00000100510	Uph	-	upperhand	ncRNA	0.030000	0.512438	
mm_101141.1	chr11	14448557	14448757	-	1	NA	NA	NA	150568	NR_045918	73307	Mm.399291	NR_045918	ENSMUSG00000085561	1700046C09Rik	-	RIKEN cDNA 1700046C09 gene	ncRNA	0.000000	0.348259	
mm_114295.1	chr13	58808618	58808818	+	1	NA	NA	NA	1021	NM_001025074	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.060000	0.686567	
mm_55989.1	chr6	85961578	85961778	-	1	NA	NA	NA	-11	NM_028099	72102	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	0.115000	0.641791	
mm_161872.1	chr18	37005122	37005322	+	1	NA	NA	NA	-98	NM_009961	12943	Mm.308500	NM_009961	ENSMUSG00000007440	Pcdha10	Cnr3|Cnr8|Crnr3|Crnr8|Pcdha14	protocadherin alpha 10	protein-coding	0.030000	0.402985	
mm_160056.1	chr7	4122139	4122339	+	1	NA	NA	NA	-1511	NR_033568	77323	Mm.378791	NR_033568	ENSMUSG00000086155	9430041J12Rik	-	RIKEN cDNA 9430041J12 gene	ncRNA	0.015000	0.572139	
mm_68605.1	chr7	116264160	116264360	-	1	NA	NA	NA	-26484	NM_001305186	233765	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.030000	0.606965	-31(CCTTTTCTGGGC,+,0.00)
mm_145382.1	chr18	57132886	57133086	+	1	NA	NA	NA	-104	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.085000	0.681592	
mm_119485.1	chr14	47373814	47374014	+	1	NA	NA	NA	54	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.095000	0.721393	
mm_99258.1	chr11	101181254	101181454	+	1	NA	NA	NA	5237	NM_016782	53321	Mm.474527	NM_016782	ENSMUSG00000017167	Cntnap1	AI841080|Caspr|NCP1|Nrxn4|p190|shm	contactin associated protein-like 1	protein-coding	0.010000	0.507463	
mm_117465.1	chr13	75943781	75943981	-	1	NA	NA	NA	-57	NM_028493	73296	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	0.130000	0.756219	
mm_15714.1	chr2	164036889	164037089	+	1	NA	NA	NA	11765	NM_001114079	381404	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	0.010000	0.601990	
mm_118532.1	chr14	15437562	15437762	+	1	NA	NA	NA	1325	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding	0.035000	0.562189	
mm_147530.1	chr18	52891886	52892086	-	1	NA	NA	NA	10661	NR_035420	100316749		NR_035420	ENSMUSG00000080573	Mir467f	Mirn467f|mmu-mir-467f	microRNA 467f	ncRNA	0.005000	0.447761	
mm_39558.1	chr5	22746124	22746324	+	1	NA	NA	NA	31	NM_029990	269629	Mm.371712	NM_029990	ENSMUSG00000106379	Lhfpl3	A930031L14Rik	lipoma HMGIC fusion partner-like 3	protein-coding	0.100000	0.701493	
mm_2669.1	chr1	127205209	127205409	+	1	NA	NA	NA	323	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.080000	0.701493	
mm_151209.1	chr19	53609269	53609469	+	1	NA	NA	NA	8973	NM_007790	13006	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.015000	0.442786	-6(TTTTTTAAAGGA,+,0.00)
mm_62458.1	chr7	101460836	101461036	+	1	NA	NA	NA	9684	NM_001243757	207728	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.015000	0.631841	
mm_89391.1	chr10	89872933	89873133	+	1	NA	NA	NA	-476	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.210000	0.860697	
mm_45135.1	chr5	48889442	48889642	-	1	NA	NA	NA	15	NM_030265	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.010000	0.527363	
mm_167350.1	chr8	83740010	83740210	-	1	NA	NA	NA	1201	NM_001163029	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.000000	0.562189	
mm_164431.1	chr16	48771872	48772072	-	1	NA	NA	NA	-16	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.010000	0.407960	-35(CGGCATTTAAGG,-,0.00)
mm_29075.1	chr3	103867995	103868195	-	1	NA	NA	NA	7818	NM_008979	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.005000	0.437811	-88(CCTTTTAAGTCT,+,0.00)
mm_104772.1	chr11	98545757	98545957	-	1	NA	NA	NA	174	NM_011771	22780	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.165000	0.786070	
mm_159291.1	chr2	174076752	174076952	+	1	NA	NA	NA	-199	NM_172675	228960	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.060000	0.557214	
mm_70358.1	chr8	5640699	5640899	+	1	NA	NA	NA	-535512	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.010000	0.512438	
mm_128095.1	chr15	27788513	27788713	-	1	NA	NA	NA	-107071	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.005000	0.507463	
mm_158594.1	chrX	151017138	151017338	-	1	NA	NA	NA	55	NM_001168600	237107	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	0.055000	0.552239	
mm_160725.1	chr10	75060980	75061180	+	1	NA	NA	NA	184	NM_001081412	110279	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.120000	0.716418	
mm_119129.1	chr14	31138729	31138929	+	1	NA	NA	NA	3976	NM_027289	70021	Mm.261681	NM_027289	ENSMUSG00000071547	Nt5dc2	2510015F01Rik	5'-nucleotidase domain containing 2	protein-coding	0.070000	0.597015	
mm_14891.1	chr2	149256920	149257120	+	1	NA	NA	NA	-148229	NM_021405	58214	Mm.117117	NM_021405	ENSMUSG00000033156	Cst10	DD72	cystatin 10 (chondrocytes)	protein-coding	0.000000	0.457711	
mm_7876.1	chr1	133011770	133011970	-	1	NA	NA	NA	13546	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	0.005000	0.303483	
mm_10406.1	chr2	13578652	13578852	+	1	NA	NA	NA	4441	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.025000	0.527363	
mm_128630.1	chr15	59079743	59079943	-	1	NA	NA	NA	2183	NM_001146180	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.005000	0.398010	
mm_99929.1	chr11	110997399	110997599	+	1	NA	NA	NA	12	NM_001252209	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.020000	0.507463	
mm_109609.1	chr12	112722422	112722622	+	1	NA	NA	NA	348	NM_001024602	217882	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0.100000	0.771144	
mm_107212.1	chr12	26444840	26445040	+	1	NA	NA	NA	11512	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.398010	
mm_15954.1	chr2	165992514	165992714	+	1	NA	NA	NA	-23	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.140000	0.776119	
mm_146105.1	chr18	74216070	74216270	+	1	NA	NA	NA	-42	NM_028868	74322	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.120000	0.626866	
mm_90595.1	chr10	128298334	128298534	+	1	NA	NA	NA	-350	NM_031252	83430	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	0.010000	0.368159	
mm_87090.1	chr10	31976648	31976848	+	1	NA	NA	NA	-367023	NM_001146349	268291	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.005000	0.283582	
mm_146444.1	chr18	85071656	85071856	+	1	NA	NA	NA	-120232	NM_025969	67105	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	tranlocase of inner mitochondrial membrane 21	protein-coding	0.010000	0.398010	-97(AACTATTTAAGG,-,0.00),-53(CTTCCTAAAAGG,-,0.00)
mm_22448.1	chr2	181698311	181698511	-	1	NA	NA	NA	31	NM_199023	277496	Mm.212749	NM_199023	ENSMUSG00000045794	Lkaaear1	4930526D03Rik|Gm692	LKAAEAR motif containing 1 (IKAAEAR murine motif)	protein-coding	0.015000	0.532338	
mm_6624.1	chr1	77514975	77515175	-	1	NA	NA	NA	13	NM_007936	13838	Mm.400747	NM_007936	ENSMUSG00000026235	Epha4	2900005C20Rik|AI385584|Cek8|Hek8|Sek|Sek1|Tyro1|rb	Eph receptor A4	protein-coding	0.060000	0.532338	
mm_92055.1	chr10	62506808	62507008	-	1	NA	NA	NA	847	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.025000	0.393035	
mm_142573.1	chr17	46680630	46680830	-	1	NA	NA	NA	-53	NM_001277311	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.085000	0.671642	
mm_32257.1	chr4	102570571	102570771	+	1	NA	NA	NA	611	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.045000	0.616915	
mm_48489.1	chr5	142550969	142551169	-	1	NA	NA	NA	29	NM_178702	231858	Mm.33766	NM_178702	ENSMUSG00000029576	Radil	AI536456|D930005D10Rik	Ras association and DIL domains	protein-coding	0.135000	0.741294	
mm_92101.1	chr10	63017998	63018198	-	1	NA	NA	NA	2202	NM_001347457	432467	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	0.025000	0.452736	
mm_2975.1	chr1	133103451	133103651	+	1	NA	NA	NA	-27615	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.020000	0.557214	
mm_123356.1	chr14	63142567	63142767	-	1	NA	NA	NA	20205	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.020000	0.562189	
mm_69902.1	chr7	141638967	141639167	-	1	NA	NA	NA	16252	NM_001330001	353328	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0.000000	0.537313	
mm_105911.1	chr11	114983504	114983704	-	1	NA	NA	NA	6282	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.000000	0.452736	
mm_41485.1	chr5	92112906	92113106	+	1	NA	NA	NA	-24932	NM_019490	56041	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0.010000	0.527363	
mm_117075.1	chr13	59508591	59508791	-	1	NA	NA	NA	35760	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.010000	0.507463	
mm_90735.1	chr10	5312451	5312651	-	1	NA	NA	NA	-117844	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.015000	0.492537	
mm_149636.1	chr19	17393964	17394164	+	1	NA	NA	NA	21	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.150000	0.731343	
mm_68307.1	chr7	105747679	105747879	-	1	NA	NA	NA	-3441	NM_020024	24075	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	0.000000	0.412935	
mm_51940.1	chr6	91705718	91705918	+	1	NA	NA	NA	21751	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.015000	0.512438	
mm_103151.1	chr11	70351931	70352131	-	1	NA	NA	NA	0	NM_009660	11687	Mm.4584	NM_009660	ENSMUSG00000018924	Alox15	12-LO|12/15-LO|15-LOX|Alox12l|L-12LO	arachidonate 15-lipoxygenase	protein-coding	0.060000	0.562189	
mm_49147.1	chr6	11925864	11926064	+	1	NA	NA	NA	83	NM_001168382	75725	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	0.065000	0.547264	
mm_135267.1	chr16	38341768	38341968	-	1	NA	NA	NA	-8	NM_001081025	320214	Mm.294342	NM_177104	ENSMUSG00000022805	Maats1	4932425I24Rik|Aat1|Spata26	MYCBP-associated, testis expressed 1	protein-coding	0.045000	0.606965	
mm_42022.1	chr5	108269554	108269754	+	1	NA	NA	NA	757	NM_026106	13486	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0.040000	0.472637	
mm_140395.1	chr17	87603551	87603751	+	1	NA	NA	NA	-32328	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.020000	0.502488	-14(GTTTATATAAGC,-,0.00)
mm_1937.1	chr1	86132616	86132816	+	1	NA	NA	NA	-20746	NM_008311	15559	Mm.439747	NM_008311	ENSMUSG00000026228	Htr2b	5-HT2B|AJ012488|AV377389	5-hydroxytryptamine (serotonin) receptor 2B	protein-coding	0.005000	0.417910	
mm_142579.1	chr17	46681803	46682003	-	1	NA	NA	NA	723	NM_001277312	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.010000	0.492537	
mm_65930.1	chr7	30322285	30322485	-	1	NA	NA	NA	-10	NM_001033140	68332	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	0.080000	0.661692	
mm_125994.1	chr15	76368810	76369010	+	1	NA	NA	NA	12	NM_021555	59053	Mm.133202	NM_021555	ENSMUSG00000022554	Hgh1	Brp16|D15Ertd741e|Fam203a|MNCb-5873	HGH1 homolog	protein-coding	0.080000	0.636816	
mm_123325.1	chr14	62966096	62966296	-	1	NA	NA	NA	18314	NM_001037751	432867	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0.005000	0.512438	
mm_157757.1	chrX	73494889	73495089	-	1	NA	NA	NA	-8097	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.000000	0.477612	
mm_61519.1	chr7	78913797	78913997	+	1	NA	NA	NA	132	NM_020583	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.020000	0.567164	
mm_101824.1	chr11	46706969	46707169	-	1	NA	NA	NA	35	NM_134249	171284	Mm.234654	NM_134249	ENSMUSG00000040413	Timd2	AA816106|AU019358|AU019662|C78111|G9D3|TIM-2|Tim2	T cell immunoglobulin and mucin domain containing 2	protein-coding	0.020000	0.507463	
mm_162900.1	chr10	115251283	115251483	-	1	NA	NA	NA	110	NM_025706	66687	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0.120000	0.711443	
mm_147188.1	chr18	37618656	37618856	-	1	NA	NA	NA	19967	NM_001159275	83885	Mm.193029	NM_001159275	ENSMUSG00000050304	Slc25a2	Ornt2	solute carrier family 25 (mitochondrial carrier, ornithine transporter) member 2	protein-coding	0.030000	0.472637	
mm_97162.1	chr11	75486740	75486940	+	1	NA	NA	NA	63	NM_138659	192159	Mm.3757	NM_138659	ENSMUSG00000020850	Prpf8	AU019467|D11Bwg0410e|DBF3/PRP8|Prp8|Sfprp8l	pre-mRNA processing factor 8	protein-coding	0.085000	0.611940	
mm_53629.1	chr6	140516339	140516539	+	1	NA	NA	NA	92340	NM_144920	109135	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.005000	0.432836	
mm_110546.1	chr12	55398611	55398811	-	1	NA	NA	NA	-114	NM_011968	26443	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.090000	0.671642	
mm_159537.1	chr4	88121162	88121362	+	1	NA	NA	NA	-778	NR_030478	735282		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	0.005000	0.328358	-72(ACTTTTATACTC,+,0.00)
mm_80673.1	chr9	90243207	90243407	+	1	NA	NA	NA	27462	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.005000	0.472637	-37(TACCATAAAAAC,-,0.00)
mm_99677.1	chr11	105985666	105985866	+	1	NA	NA	NA	-72	NR_104047	100379610	Mm.754	NR_104047	ENSMUSG00000085297	Gm11651	OTTMUSG00000003114	predicted gene 11651	ncRNA	0.015000	0.527363	
mm_41260.1	chr5	89027863	89028063	+	1	NA	NA	NA	140703	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.000000	0.512438	
mm_106732.1	chr12	3891720	3891920	+	1	NA	NA	NA	76	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.040000	0.691542	
mm_153722.1	chr19	44406643	44406843	-	1	NA	NA	NA	966	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.035000	0.527363	
mm_60146.1	chr7	38183781	38183981	+	1	NA	NA	NA	94	NM_028166	72244	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0.075000	0.681592	
mm_144440.1	chr18	21652199	21652399	+	1	NA	NA	NA	69	NM_001081403	225266	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	0.045000	0.597015	
mm_54603.1	chr6	38308166	38308366	-	1	NA	NA	NA	-9007	NM_172467	209032	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	0.005000	0.502488	
mm_68724.1	chr7	120201859	120202059	-	1	NA	NA	NA	29	NM_016669	12971	Mm.9114	NM_016669	ENSMUSG00000030905	Crym	-	crystallin, mu	protein-coding	0.080000	0.666667	
mm_12943.1	chr2	85136444	85136644	+	1	NA	NA	NA	184	NM_011784	23796	Mm.29368	NM_011784	ENSMUSG00000044338	Aplnr	APJ|Agtrl1|msr/apj	apelin receptor	protein-coding	0.015000	0.557214	
mm_124371.1	chr14	105897623	105897823	-	1	NA	NA	NA	-904	NM_011897	24064	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty homolog 2 (Drosophila)	protein-coding	0.085000	0.611940	
mm_60234.1	chr7	43694916	43695116	+	1	NA	NA	NA	4598	NM_174866	317653	Mm.247377	NM_174866	ENSMUSG00000044737	Klk14	GK14	kallikrein related-peptidase 14	protein-coding	0.010000	0.517413	
mm_81789.1	chr9	114978393	114978593	+	1	NA	NA	NA	-44506	NM_175380	333433	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	0.085000	0.711443	
mm_36987.1	chr4	109666680	109666880	-	1	NA	NA	NA	-24	NM_001301368	12580	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	protein-coding	0.125000	0.681592	
mm_94662.1	chr11	17199301	17199501	+	1	NA	NA	NA	12188	NM_025443	66249	Mm.27831	NM_025443	ENSMUSG00000020116	Pno1	1810003N24Rik|AA407421|AU015468|AU019495|AU042323|Emi3|Imi3	partner of NOB1 homolog	protein-coding	0.015000	0.378109	
mm_84261.1	chr9	62536911	62537111	-	1	NA	NA	NA	33	NM_175484	235431	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.135000	0.791045	
mm_41621.1	chr5	96841911	96842111	+	1	NA	NA	NA	48626	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.010000	0.388060	
mm_144981.1	chr18	37997590	37997790	+	1	NA	NA	NA	-116	NM_139206	106952	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	0.000000	0.582090	
mm_102995.1	chr11	69686822	69687022	-	1	NA	NA	NA	-1368	NM_023517	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.030000	0.611940	
mm_151460.1	chr19	58511895	58512095	+	1	NA	NA	NA	-7	NM_029372	75645	Mm.159542	NM_029372	ENSMUSG00000025090	Ccdc172	1700011F14Rik	coiled-coil domain containing 172	protein-coding	0.065000	0.661692	
mm_27755.1	chr3	69598748	69598948	-	1	NA	NA	NA	112	NM_020026	26879	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0.205000	0.805970	
mm_5977.1	chr1	57969981	57970181	-	1	NA	NA	NA	3	NM_001159864	51960	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding	0.135000	0.721393	
mm_80132.1	chr9	70658059	70658259	+	1	NA	NA	NA	-985	NM_172772	235461	Mm.170855	NM_172772	ENSMUSG00000042444	Fam63b	AI465301|B230380D07Rik|mKIAA1164	family with sequence similarity 63, member B	protein-coding	0.000000	0.313433	
mm_63152.1	chr7	123377946	123378146	+	1	NA	NA	NA	64	NM_025304	30949	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0.080000	0.631841	
mm_43255.1	chr5	130222209	130222409	+	1	NA	NA	NA	-26	NM_027854	71667	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0.155000	0.696517	
mm_166940.1	chr7	43376720	43376920	-	1	NA	NA	NA	25479	NM_145581	233186	Mm.290569	NM_145581	ENSMUSG00000039013	Siglecf	Siglec5|mSiglec-F	sialic acid binding Ig-like lectin F	protein-coding	0.005000	0.422886	-33(CCCTTTATAAGC,+,0.00),-33(CCCTTTATAAGC,-,0.00)
mm_68.1	chr1	6637761	6637961	+	1	NA	NA	NA	-92190	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.328358	
mm_151762.1	chr19	5134264	5134464	-	1	NA	NA	NA	-15956	NM_008451	16594	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	0.015000	0.537313	
mm_134004.1	chr16	4790095	4790295	-	1	NA	NA	NA	-260	NM_025670	66626	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0.075000	0.661692	
mm_45083.1	chr5	44038734	44038934	-	1	NA	NA	NA	55934	NM_001163581	19126	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.005000	0.532338	77(AACTCTTAAAGC,-,0.00)
mm_154319.1	chrM	2106	2306	+	1	NA	NA	NA	NA	NA									0.020000	0.318408	
mm_148370.1	chr18	88894247	88894447	-	1	NA	NA	NA	-140	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.135000	0.796020	
mm_97241.1	chr11	75679533	75679733	+	1	NA	NA	NA	374	NM_001277221	12928	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	0.100000	0.701493	
mm_50160.1	chr6	41547332	41547532	+	1	NA	NA	NA	25656	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.472637	35(GACTATAAGAGG,-,0.00)
mm_73407.1	chr8	105971467	105971667	+	1	NA	NA	NA	-5452	NR_045594	20498	Mm.292447	NM_009195	ENSMUSG00000017765	Slc12a4	AW546649|KCC1|RBCKCC1	solute carrier family 12, member 4	protein-coding	0.015000	0.507463	
mm_115752.1	chr13	19185412	19185612	-	1	NA	NA	NA	210301	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.020000	0.477612	
mm_71224.1	chr8	40900523	40900723	+	1	NA	NA	NA	-25610	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.010000	0.308458	
mm_103893.1	chr11	83575123	83575323	-	1	NA	NA	NA	3413	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.000000	0.388060	
mm_151472.1	chr19	58672979	58673179	+	1	NA	NA	NA	2714	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.035000	0.427861	
mm_41081.1	chr5	87677505	87677705	+	1	NA	NA	NA	11397	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.263682	
mm_79037.1	chr9	46207515	46207715	+	1	NA	NA	NA	-21015	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.020000	0.472637	
mm_170775.1	chr2	166252615	166252815	-	1	NA	NA	NA	-21193	NR_033467	670775	Mm.384326	NR_033467	ENSMUSG00000084840	Gm11468	OTTMUSG00000001131	predicted gene 11468	ncRNA	0.010000	0.517413	
mm_54099.1	chr6	16846193	16846393	-	1	NA	NA	NA	52148	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.005000	0.313433	
mm_93882.1	chr10	125308748	125308948	-	1	NA	NA	NA	19687	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.035000	0.552239	
mm_100967.1	chr11	6660136	6660336	-	1	NA	NA	NA	0	NR_028586	100041311	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	OTTMUSG00000005125|OTTMUSG00000005127	predicted gene 11978	pseudo	0.015000	0.537313	
mm_168540.1	chr11	62389599	62389799	-	1	NA	NA	NA	48816	NM_001252313	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.010000	0.318408	
mm_9768.1	chr1	180995999	180996199	-	1	NA	NA	NA	21470	NM_010145	13849	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.030000	0.577114	
mm_24959.1	chr3	96696288	96696488	+	1	NA	NA	NA	13	NM_146135	229615	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	0.085000	0.721393	
mm_138645.1	chr17	35866727	35866927	+	1	NA	NA	NA	212	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.055000	0.592040	
mm_46889.1	chr5	113974740	113974940	-	1	NA	NA	NA	18917	NM_198109	231637	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot homolog 1 (Drosophila)	protein-coding	0.020000	0.557214	-39(GCCTTTTTAAGC,-,0.00),-37(CTTTTTAAGCCA,+,0.00)
mm_60445.1	chr7	44477051	44477251	+	1	NA	NA	NA	6804	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.437811	
mm_16406.1	chr2	180034983	180035183	+	1	NA	NA	NA	7381	NM_001289476	26444	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	0.005000	0.383085	-6(TTTTTTAAGGTC,+,0.00)
mm_39381.1	chr5	13125393	13125593	+	1	NA	NA	NA	-271291	NM_001243072	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.030000	0.492537	-20(CCTCTTAAACCA,+,0.00),4(GCTCTAATAGAG,+,0.00)
mm_135758.1	chr16	56037669	56037869	-	1	NA	NA	NA	5	NM_029092	52575	Mm.288742	NM_029092	ENSMUSG00000044763	Trmt10c	1300018J16Rik|D16Ertd454e|Rg9mtd1|Rnmtd1	tRNA methyltransferase 10C	protein-coding	0.120000	0.701493	
mm_18290.1	chr2	52675992	52676192	-	1	NA	NA	NA	51	NM_001285426	12298	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.100000	0.716418	
mm_164006.1	chr14	67107137	67107337	+	1	NA	NA	NA	-34766	NM_001205188	71978	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0.005000	0.537313	
mm_126295.1	chr15	79347884	79348084	+	1	NA	NA	NA	-77	NM_001304831	17133	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.120000	0.711443	
mm_164773.1	chr17	89099868	89100068	+	1	NA	NA	NA	100707	NM_013523	14309	Mm.57155	NM_013523	ENSMUSG00000032937	Fshr	-	follicle stimulating hormone receptor	protein-coding	0.005000	0.278607	
mm_29388.1	chr3	108889781	108889981	-	1	NA	NA	NA	127	NM_177091	320181	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0.010000	0.497512	
mm_153268.1	chr19	37127609	37127809	-	1	NA	NA	NA	-46134	NR_045329	319931	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.005000	0.303483	
mm_82659.1	chr9	22085285	22085485	-	1	NA	NA	NA	42	NM_001253897	26940	Mm.425568	NM_012029	ENSMUSG00000066839	Ecsit	Sitpec	ECSIT signalling integrator	protein-coding	0.085000	0.631841	
mm_48718.1	chr5	147322251	147322451	-	1	NA	NA	NA	89	NM_001039678	231903	Mm.291286	NM_001039678	ENSMUSG00000075543	Urad	EG231903|Prhoxnb	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase	protein-coding	0.020000	0.522388	
mm_148130.1	chr18	75697414	75697614	-	1	NA	NA	NA	182	NM_201354	269037	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0.070000	0.716418	
mm_97290.1	chr11	76217559	76217759	+	1	NA	NA	NA	46	NM_021294	13168	Mm.347413	NM_021294	ENSMUSG00000038057	Dbil5	ELP	diazepam binding inhibitor-like 5	protein-coding	0.090000	0.646766	
mm_8032.1	chr1	135155230	135155430	-	1	NA	NA	NA	8496	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.015000	0.572139	
mm_157737.1	chrX	72274652	72274852	-	1	NA	NA	NA	-31	NM_017369	14404	Mm.391288	NM_017369	ENSMUSG00000031340	Gabre	-	gamma-aminobutyric acid (GABA) A receptor, subunit epsilon	protein-coding	0.065000	0.626866	
mm_134139.1	chr16	10683529	10683729	-	1	NA	NA	NA	101907	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.020000	0.482587	
mm_167128.1	chr7	126777032	126777232	+	1	NA	NA	NA	157	NM_025347	66090	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee-like 3 (Drosophila)	protein-coding	0.105000	0.771144	
mm_53139.1	chr6	125221630	125221830	+	1	NA	NA	NA	6149	NM_001080557	22317	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	0.020000	0.557214	
mm_103185.1	chr11	70587059	70587259	-	1	NA	NA	NA	24278	NM_016713	50932	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	0.015000	0.492537	
mm_43815.1	chr5	142909236	142909436	+	1	NA	NA	NA	-2582	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.005000	0.582090	
mm_132481.1	chr16	36875062	36875262	+	1	NA	NA	NA	-336	NM_134111	106389	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0.115000	0.666667	
mm_28692.1	chr3	95524727	95524927	-	1	NA	NA	NA	-1959	NM_021281	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.005000	0.567164	
mm_124521.1	chr14	122057973	122058173	-	1	NA	NA	NA	23399	NM_001037744	223262	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.005000	0.522388	
mm_140279.1	chr17	84964941	84965141	+	1	NA	NA	NA	7040	NM_001159496	19043	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.015000	0.442786	
mm_122218.1	chr14	32388205	32388405	-	1	NA	NA	NA	68	NM_001034037	67085	Mm.109099	NM_001034037	ENSMUSG00000072473	1700024G13Rik	C10orf53	RIKEN cDNA 1700024G13 gene	protein-coding	0.040000	0.611940	
mm_73119.1	chr8	94750353	94750553	+	1	NA	NA	NA	4769	NM_009137	20299	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	0.005000	0.577114	
mm_71743.1	chr8	64619400	64619600	+	1	NA	NA	NA	73609	NM_013494	12876	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|R74677|fat	carboxypeptidase E	protein-coding	0.020000	0.432836	
mm_157820.1	chrX	74073387	74073587	-	1	NA	NA	NA	12203	NM_010788	17257	Mm.131408	NM_010788	ENSMUSG00000031393	Mecp2	1500041B07Rik|D630021H01Rik|Mbd5|WBP10	methyl CpG binding protein 2	protein-coding	0.000000	0.398010	
mm_151547.1	chr19	59344403	59344603	+	1	NA	NA	NA	1277	NM_001033222	107368	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0.030000	0.601990	
mm_29477.1	chr3	115711127	115711327	-	1	NA	NA	NA	3828	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.005000	0.402985	
mm_136327.1	chr16	92346303	92346503	-	1	NA	NA	NA	13065	NM_008424	16509	Mm.299425	NM_008424	ENSMUSG00000039639	Kcne1	Isk|MinK|nmf190	potassium voltage-gated channel, Isk-related subfamily, member 1	protein-coding	0.015000	0.601990	
mm_153732.1	chr19	44408670	44408870	-	1	NA	NA	NA	-1061	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.462687	-16(CTTTTTAAAAAG,+,0.00),-16(CTTTTTAAAAAG,-,0.00)
mm_136514.1	chr16	97447562	97447762	-	1	NA	NA	NA	15243	NM_010846	17857	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.000000	0.497512	
mm_112002.1	chr12	110840756	110840956	-	1	NA	NA	NA	83	NM_011973	26448	Mm.140948	NM_011973	ENSMUSG00000056458	Mok	RAGE1|Rage|Stk30	MOK protein kinase	protein-coding	0.085000	0.636816	
mm_13155.1	chr2	92483755	92483955	+	1	NA	NA	NA	-23337	NM_145832	228368	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.015000	0.492537	
mm_11113.1	chr2	28193128	28193328	+	1	NA	NA	NA	135	NM_001038614	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.125000	0.761194	
mm_61896.1	chr7	90029951	90030151	+	1	NA	NA	NA	892	NR_110364	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	0.030000	0.542289	-36(TTCCTTATAAAG,-,0.00),-34(CCTTATAAAGAG,+,0.00)
mm_5971.1	chr1	57391386	57391586	-	1	NA	NA	NA	13866	NM_028546	73467	Mm.263673	NM_028546	ENSMUSG00000038323	1700066M21Rik	AI428479	RIKEN cDNA 1700066M21 gene	protein-coding	0.010000	0.278607	
mm_31647.1	chr4	59618187	59618387	+	1	NA	NA	NA	-7924	NM_001015681	230259	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	0.015000	0.427861	-6(TTTTTTAAGGAC,+,0.00)
mm_137219.1	chr17	24170891	24171091	+	1	NA	NA	NA	-1562	NM_009729	11984	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0.010000	0.537313	
mm_155163.1	chrX	52988110	52988310	+	1	NA	NA	NA	132	NM_013556	15452	Mm.299381	NM_013556	ENSMUSG00000025630	Hprt	C81579|HPGRT|Hprt1	hypoxanthine guanine phosphoribosyl transferase	protein-coding	0.100000	0.696517	
mm_120185.1	chr14	61492596	61492796	+	1	NA	NA	NA	8	NR_045714	75349	Mm.233613	NR_045714		4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	0.015000	0.487562	
mm_84570.1	chr9	68969462	68969662	-	1	NA	NA	NA	204216	NR_033299	320440	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.025000	0.472637	
mm_41930.1	chr5	105700119	105700319	+	1	NA	NA	NA	250	NM_001122768	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.170000	0.825871	
mm_166408.1	chr5	136882998	136883198	-	1	NA	NA	NA	9	NM_024474	140709	Mm.295020	NM_024474	ENSMUSG00000004415	Col26a1	9430032K24Rik|BC002218|Col26a|Emid2|Emu2	collagen, type XXVI, alpha 1	protein-coding	0.075000	0.706468	
mm_161885.1	chr18	37741963	37742163	+	1	NA	NA	NA	-31	NM_033578	93703	Mm.247203	NM_033578	ENSMUSG00000103088	Pcdhgb6	-	protocadherin gamma subfamily B, 6	protein-coding	0.035000	0.547264	
mm_85932.1	chr9	112097591	112097791	-	1	NA	NA	NA	21020	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.000000	0.452736	
mm_82360.1	chr9	14500270	14500470	-	1	NA	NA	NA	112	NM_173433	244694	Mm.240457	NM_173433	ENSMUSG00000053914	Kdm4d	4932416A15|Jmjd2d	lysine (K)-specific demethylase 4D	protein-coding	0.075000	0.557214	
mm_146946.1	chr18	32462397	32462597	-	1	NA	NA	NA	-84213	NR_045403	402767	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.025000	0.542289	
mm_89109.1	chr10	84622236	84622436	+	1	NA	NA	NA	-101	NM_027423	70428	Mm.335007	NM_027423	ENSMUSG00000034453	Polr3b	2700078H01Rik|A330032P03Rik|C85372|RPC2	polymerase (RNA) III (DNA directed) polypeptide B	protein-coding	0.085000	0.601990	
mm_90901.1	chr10	10688850	10689050	-	1	NA	NA	NA	-62096	NR_046010	78056	Mm.271285	NR_046010		4930567K20Rik	1700038H22Rik	RIKEN cDNA 4930567K20 gene	ncRNA	0.005000	0.532338	
mm_152303.1	chr19	9085282	9085482	-	1	NA	NA	NA	2574	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.005000	0.512438	
mm_54502.1	chr6	35510459	35510659	-	1	NA	NA	NA	29329	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.388060	
mm_81070.1	chr9	106203096	106203296	+	1	NA	NA	NA	88	NM_011876	23999	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	0.130000	0.736318	
mm_119971.1	chr14	55540309	55540509	+	1	NA	NA	NA	143	NM_028994	74551	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding	0.065000	0.646766	-53(TCCTTTTTAAGC,-,0.00),-51(CTTTTTAAGCGC,+,0.00)
mm_77944.1	chr9	7358194	7358394	+	1	NA	NA	NA	10920	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.358209	
mm_136018.1	chr16	76249363	76249563	-	1	NA	NA	NA	123586	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.040000	0.497512	
mm_18938.1	chr2	76753950	76754150	-	1	NA	NA	NA	78735	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.010000	0.452736	
mm_20186.1	chr2	122602452	122602652	-	1	NA	NA	NA	8725	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.045000	0.517413	
mm_98794.1	chr11	96944193	96944393	+	1	NA	NA	NA	147	NR_003293	319371	Mm.436865	NR_003293	ENSMUSG00000078700	D030028A08Rik	-	RIKEN cDNA D030028A08 gene	ncRNA	0.060000	0.621891	
mm_160006.1	chr6	124755866	124756066	-	1	NA	NA	NA	521	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.080000	0.661692	-59(GAGCCTAAAGGG,-,0.00)
mm_110234.1	chr12	30373180	30373380	-	1	NA	NA	NA	95	NM_172951	268534	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	0.125000	0.751244	
mm_155487.1	chrX	73716498	73716698	+	1	NA	NA	NA	1	NM_007435	11666	Mm.365	NM_007435	ENSMUSG00000031378	Abcd1	ALDP|Ald|Aldgh	ATP-binding cassette, sub-family D (ALD), member 1	protein-coding	0.060000	0.681592	
mm_81001.1	chr9	103426496	103426696	+	1	NA	NA	NA	3018	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.025000	0.582090	
mm_133077.1	chr16	58727928	58728128	+	1	NA	NA	NA	118	NM_001252451	224250	Mm.29482	NM_171826	ENSMUSG00000022744	Cldnd1	1110019C08Rik|AA407103|AI849195|AW489850|Cldn25	claudin domain containing 1	protein-coding	0.105000	0.726368	
mm_62830.1	chr7	113556699	113556899	+	1	NA	NA	NA	8188	NR_126544	69295	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0.005000	0.422886	17(GCCCATAAAAAG,-,0.00),60(TCTTATAAAGGG,+,0.00)
mm_2219.1	chr1	89930130	89930330	+	1	NA	NA	NA	946	NM_010262	14472	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.150000	0.751244	
mm_112098.1	chr12	112785126	112785326	-	1	NA	NA	NA	-23749	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.020000	0.537313	
mm_30081.1	chr3	138091043	138091243	-	1	NA	NA	NA	-23755	NR_037975	329763	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA	0.035000	0.502488	
mm_16671.1	chr2	6722143	6722343	-	1	NA	NA	NA	-581	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.015000	0.517413	-87(TGCTTTTTAAAG,-,0.00),-86(GCTTTTTAAAGG,-,0.00),-85(CTTTTTAAAGGG,+,0.00),-85(CTTTTTAAAGGG,-,0.00)
mm_144.1	chr1	11004424	11004624	+	1	NA	NA	NA	11059	NM_029525	109294	Mm.123247	NM_029525	ENSMUSG00000048960	Prex2	6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	protein-coding	0.010000	0.348259	
mm_102162.1	chr11	53763867	53764067	-	1	NA	NA	NA	-313	NR_106131	102465772		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.060000	0.656716	-35(TCTTATAAACAC,+,0.00)
mm_148204.1	chr18	79110274	79110474	-	1	NA	NA	NA	-983	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.110000	0.716418	
mm_33276.1	chr4	128711761	128711961	+	1	NA	NA	NA	-15710	NM_001195083	54383	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic-like 2 (Drosophila)	protein-coding	0.030000	0.527363	
mm_113787.1	chr13	45538723	45538923	+	1	NA	NA	NA	31379	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.020000	0.606965	
mm_140384.1	chr17	87145521	87145721	+	1	NA	NA	NA	37942	NM_019654	56468	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0.000000	0.363184	
mm_798.1	chr1	45347563	45347763	+	1	NA	NA	NA	36125	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.010000	0.432836	-37(TCTTTAATAGTT,+,0.00)
mm_152624.1	chr19	12468963	12469163	-	1	NA	NA	NA	8284	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.000000	0.482587	
mm_119243.1	chr14	33589153	33589353	+	1	NA	NA	NA	-17	NM_008978	19256	Mm.8019	NM_008978	ENSMUSG00000021940	Ptpn20	typ	protein tyrosine phosphatase, non-receptor type 20	protein-coding	0.055000	0.651741	
mm_44582.1	chr5	24902351	24902551	-	1	NA	NA	NA	-118	NR_040684	71161	Mm.443533	NR_040684	ENSMUSG00000086446	Prkag2os1	4933426D04Rik	protein kinase, AMP-activated, gamma 2 non-catalytic subunit, opposite strand 1	ncRNA	0.020000	0.472637	
mm_133669.1	chr16	92075347	92075547	+	1	NA	NA	NA	17111	NM_080456	121022	Mm.217354	NM_080456	ENSMUSG00000039680	Mrps6	AW046321	mitochondrial ribosomal protein S6	protein-coding	0.005000	0.313433	
mm_98179.1	chr11	87760801	87761001	+	1	NA	NA	NA	360	NM_172449	207777	Mm.342019	NM_172449	ENSMUSG00000034156	Bzrap1	D230016K05|PRAX-1|Tspoap1|mKIAA0612	benzodiazepine receptor associated protein 1	protein-coding	0.030000	0.537313	72(TCTTAAATAGGC,+,0.00)
mm_31143.1	chr4	43383383	43383583	+	1	NA	NA	NA	1501	NM_001037709	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.030000	0.492537	
mm_130119.1	chr15	89523540	89523740	-	1	NA	NA	NA	23783	NM_021423	58234	Mm.146855	NM_021423	ENSMUSG00000022623	Shank3	AI841104|SHANK3c-3|SHANK3c-4|Shank3b	SH3/ankyrin domain gene 3	protein-coding	0.120000	0.756219	
mm_120889.1	chr14	75834401	75834601	+	1	NA	NA	NA	10463	NR_045294	100043189	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.020000	0.512438	
mm_124012.1	chr14	76110726	76110926	-	1	NA	NA	NA	-11	NM_026177	67467	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0.050000	0.527363	
mm_75236.1	chr8	39629545	39629745	-	1	NA	NA	NA	13033	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.015000	0.338308	
mm_70805.1	chr8	22974795	22974995	+	1	NA	NA	NA	59	NM_001277280	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.205000	0.900498	
mm_34393.1	chr4	145000339	145000539	+	1	NA	NA	NA	107302	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.010000	0.487562	-33(CCCTATATATAG,-,0.00),-31(CTATATATAGGC,+,0.00)
mm_42066.1	chr5	109600844	109601044	+	1	NA	NA	NA	-41951	NM_001310694	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.015000	0.462687	
mm_84447.1	chr9	66511650	66511850	-	1	NA	NA	NA	2843	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.140000	0.716418	
mm_41807.1	chr5	103754394	103754594	+	1	NA	NA	NA	-79	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.075000	0.601990	
mm_111401.1	chr12	90969705	90969905	-	1	NA	NA	NA	-76043	NR_045858	71349	Mm.442093	NR_045858		5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	0.000000	0.507463	
mm_99897.1	chr11	109650444	109650644	+	1	NA	NA	NA	-377	NM_021880	19084	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.060000	0.601990	
mm_126016.1	chr15	76660487	76660687	+	1	NA	NA	NA	-54	NM_010630	16581	Mm.378950	NM_010630	ENSMUSG00000004187	Kifc2	-	kinesin family member C2	protein-coding	0.120000	0.696517	
mm_146614.1	chr18	10065739	10065939	-	1	NA	NA	NA	-35690	NM_001038589	59025	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0.005000	0.343284	
mm_29295.1	chr3	107852712	107852912	-	1	NA	NA	NA	-24418	NM_133867	99662	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0.020000	0.582090	66(GTTTATAGGGAC,+,0.00)
mm_112789.1	chr13	20185243	20185443	+	1	NA	NA	NA	94836	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.050000	0.507463	
mm_160352.1	chr8	21191462	21191662	+	1	NA	NA	NA	-11	NM_007848	13226	Mm.442051	NM_007848	ENSMUSG00000074442	Defa31	CRS4C-2|CRS4C2|CRS4C2b|CRS4C2c|CRS4C2d|CRS4C3a|CRS4C3a2|CRS4C3b|CRS4C3c|CRS4C3d|CRS4C3e|Defa-rs7|Defcr-rs7	defensin, alpha, 31	protein-coding	0.000000	0.522388	-25(CCCTATAAATGC,+,0.00),-25(CCCTATAAATGC,-,0.00)
mm_114080.1	chr13	54574913	54575113	+	1	NA	NA	NA	0	NM_019968	56795	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0.085000	0.681592	
mm_30521.1	chr3	158561488	158561688	-	1	NA	NA	NA	633	NM_001291453	242274	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding	0.110000	0.746269	
mm_131635.1	chr16	20188727	20188927	+	1	NA	NA	NA	-12593	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.005000	0.313433	81(CCTTTAAAATTG,+,0.00)
mm_140389.1	chr17	87282905	87283105	+	1	NA	NA	NA	119	NM_028639	225049	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.085000	0.741294	
mm_63616.1	chr7	128237433	128237633	+	1	NA	NA	NA	176	NM_146205	233912	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0.065000	0.537313	
mm_157531.1	chrX	51018546	51018746	-	1	NA	NA	NA	-628	NM_172413	72065	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	0.105000	0.736318	
mm_10300.1	chr2	10593084	10593284	+	1	NA	NA	NA	75580	NR_035417	100316668		NR_035417	ENSMUSG00000080657	Mir669i	Mirn669i|mir-669i|mmu-mir-669i	microRNA 669i	ncRNA	0.025000	0.452736	
mm_123584.1	chr14	67062738	67062938	-	1	NA	NA	NA	9633	NM_028032	71978	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0.000000	0.323383	
mm_82344.1	chr9	13818580	13818780	-	1	NA	NA	NA	8373	NR_037622	74360	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding	0.030000	0.467662	
mm_131200.1	chr16	8619315	8619515	+	1	NA	NA	NA	18286	NM_025708	66690	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	0.020000	0.562189	
mm_39486.1	chr5	20886094	20886294	+	1	NA	NA	NA	3741	NM_177601	212090	Mm.347525	NM_177601	ENSMUSG00000045435	Tmem60	BC027828	transmembrane protein 60	protein-coding	0.005000	0.402985	26(GCCTCTTTAAAC,-,0.00)
mm_169335.1	chr14	120941774	120941974	+	1	NA	NA	NA	30680	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	0.020000	0.422886	-78(ATCTTTTAAAAG,-,0.00),-77(TCTTTTAAAAGC,+,0.00),-77(TCTTTTAAAAGC,-,0.00),-76(CTTTTAAAAGCG,+,0.00)
mm_80317.1	chr9	74865544	74865744	+	1	NA	NA	NA	3723	NM_008262	15379	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	0.015000	0.447761	
mm_28074.1	chr3	84304672	84304872	-	1	NA	NA	NA	3	NM_001271726	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.065000	0.621891	
mm_99684.1	chr11	106036762	106036962	+	1	NA	NA	NA	-10	NM_027946	71833	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.115000	0.636816	
mm_147645.1	chr18	60392526	60392726	-	1	NA	NA	NA	16597	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.000000	0.338308	
mm_77741.1	chr8	126970949	126971149	-	1	NA	NA	NA	30	NM_172762	52202	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	0.080000	0.631841	
mm_131106.1	chr16	5007576	5007776	+	1	NA	NA	NA	360	NR_045596	432995	Mm.271618	NM_001253796	ENSMUSG00000096215	Smim22	EG432995|Gm5480	small integral membrane protein 22	protein-coding	0.005000	0.601990	
mm_8069.1	chr1	135479862	135480062	-	1	NA	NA	NA	-25279	NR_049188	100885827		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0.010000	0.457711	
mm_132356.1	chr16	34649853	34650053	+	1	NA	NA	NA	-1258	NM_030744	76378	Mm.23515	NM_030744	ENSMUSG00000022832	Ropn1	1700008N21Rik|ODF6|RHPNAP1|Rppn|ropporin	ropporin, rhophilin associated protein 1	protein-coding	0.035000	0.636816	
mm_9595.1	chr1	174921720	174921920	-	1	NA	NA	NA	-1	NM_011825	23893	Mm.25760	NM_011825	ENSMUSG00000050069	Grem2	Gremlin2|Prdc	gremlin 2, DAN family BMP antagonist	protein-coding	0.060000	0.611940	
mm_7248.1	chr1	93654050	93654250	-	1	NA	NA	NA	-18423	NM_021537	59041	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.000000	0.427861	-89(ACTTATATAAGG,-,0.00)
mm_5302.1	chr1	21325638	21325838	-	1	NA	NA	NA	-23939	NM_183322	368204	Mm.26006	NM_183322	ENSMUSG00000067750	Khdc1a	AU014713|C88118|Ndg1	KH domain containing 1A	protein-coding	0.005000	0.447761	-33(GGGTATAAAAAG,-,0.00)
mm_25721.1	chr3	122729760	122729960	+	1	NA	NA	NA	702	NM_153422	242202	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	0.060000	0.681592	
mm_65819.1	chr7	29155846	29156046	-	1	NA	NA	NA	264	NM_001146023	73833	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	0.135000	0.756219	
mm_144600.1	chr18	32377267	32377467	+	1	NA	NA	NA	150	NM_009668	30948	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0.110000	0.711443	
mm_92958.1	chr10	85916854	85917054	-	1	NA	NA	NA	32	NM_001302886	72843	Mm.25307	NM_181650	ENSMUSG00000035529	Prdm4	1700031E19Rik|2810470D21Rik|AW552272|SC-1|SC1	PR domain containing 4	protein-coding	0.130000	0.736318	
mm_18558.1	chr2	65238369	65238569	-	1	NA	NA	NA	157	NM_177025	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.150000	0.805970	
mm_16464.1	chr2	180604789	180604989	+	1	NA	NA	NA	6667	NM_009936	12841	Mm.141312	NM_009936	ENSMUSG00000027570	Col9a3	AV006866	collagen, type IX, alpha 3	protein-coding	0.010000	0.507463	
mm_155196.1	chrX	56469189	56469389	+	1	NA	NA	NA	14450	NM_172779	236790	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	0.005000	0.363184	
mm_108793.1	chr12	91400906	91401106	+	1	NA	NA	NA	13	NM_011648	22095	Mm.173847	NM_011648	ENSMUSG00000020963	Tshr	AI481368|hypothroid|hyt|pet	thyroid stimulating hormone receptor	protein-coding	0.050000	0.646766	
mm_10977.1	chr2	25776918	25777118	+	1	NA	NA	NA	1	NM_001100455	227630	Mm.27838	NM_001100455	ENSMUSG00000069080	Lcn11	Gm109	lipocalin 11	protein-coding	0.005000	0.557214	
mm_99692.1	chr11	106084500	106084700	+	1	NA	NA	NA	-302	NM_011947	26406	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.095000	0.661692	
mm_157835.1	chrX	74274937	74275137	-	1	NA	NA	NA	-932	NR_106059	102466804		NR_106059	ENSMUSG00000099226	Mir7091	Gm27381|mmu-mir-7091	microRNA 7091	ncRNA	0.015000	0.417910	
mm_58773.1	chr7	16004590	16004790	+	1	NA	NA	NA	-5195	NM_001081418	243842	Mm.440249	NM_001081418	ENSMUSG00000070808	Gltscr1	-	glioma tumor suppressor candidate region gene 1	protein-coding	0.020000	0.557214	
mm_125802.1	chr15	74914604	74914804	+	1	NA	NA	NA	-33000	NM_025929	67038	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.015000	0.482587	
mm_170333.1	chr18	45032613	45032813	-	1	NA	NA	NA	204048	NM_001163013	240255	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	0.060000	0.626866	
mm_158988.1	chr1	133272142	133272342	+	1	NA	NA	NA	-2434	NR_037984	100502933	Mm.487491	NR_037984	ENSMUSG00000101693	Gm19461	-	predicted gene, 19461	ncRNA	0.030000	0.616915	
mm_127101.1	chr15	97791383	97791583	+	1	NA	NA	NA	7118	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.015000	0.587065	
mm_98766.1	chr11	96633681	96633881	+	1	NA	NA	NA	143774	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.005000	0.378109	-94(CTATATTAAAGC,-,0.00)
mm_110511.1	chr12	54701630	54701830	-	1	NA	NA	NA	-5836	NM_025456	66266	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	0.015000	0.388060	-42(ATCTTTAAAAGT,-,0.00),-41(TCTTTAAAAGTA,+,0.00)
mm_63943.1	chr7	139834156	139834356	+	1	NA	NA	NA	82	NM_177469	52389	Mm.39863	NM_177469	ENSMUSG00000025475	Adgra1	2900059M17Rik|D7Ertd680e|Gpr123	adhesion G protein-coupled receptor A1	protein-coding	0.060000	0.651741	
mm_39216.1	chr4	156186019	156186219	-	1	NA	NA	NA	11369	NM_021604	11603	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0.080000	0.701493	
mm_166086.1	chr4	138879306	138879506	+	1	NA	NA	NA	1464	NM_012044	26970	Mm.296007	NM_012044	ENSMUSG00000028751	Pla2g2e	-	phospholipase A2, group IIE	protein-coding	0.005000	0.567164	
mm_27581.1	chr3	59101641	59101841	-	1	NA	NA	NA	80	NM_173398	229323	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	0.010000	0.542289	
mm_41673.1	chr5	99682308	99682508	+	1	NA	NA	NA	46652	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.020000	0.482587	
mm_33433.1	chr4	130061054	130061254	+	1	NA	NA	NA	13314	NM_028266	107581	Mm.41860	NM_028266	ENSMUSG00000040690	Col16a1	2700007F12Rik|A530052M23Rik|AI838662|CA1F	collagen, type XVI, alpha 1	protein-coding	0.000000	0.477612	
mm_80895.1	chr9	99629766	99629966	+	1	NA	NA	NA	288	NM_001311142	72507	Mm.221455	NM_028258	ENSMUSG00000037784	Dzip1l	2610524A10Rik|AI663976	DAZ interacting protein 1-like	protein-coding	0.095000	0.641791	
mm_81340.1	chr9	108533497	108533697	+	1	NA	NA	NA	16510	NM_175143	69232	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik	glutamine-rich 1	protein-coding	0.005000	0.492537	
mm_24987.1	chr3	97032301	97032501	+	1	NA	NA	NA	-1	NM_001271628	14613	Mm.281816	NM_008121	ENSMUSG00000057123	Gja5	5730555N10Rik|Cnx40|Cx40|Gja-5	gap junction protein, alpha 5	protein-coding	0.010000	0.542289	
mm_166634.1	chr6	80185631	80185831	-	1	NA	NA	NA	166088	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.000000	0.487562	
mm_162777.1	chr10	69534093	69534293	+	1	NA	NA	NA	485	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.025000	0.527363	-81(CCCTAAATGGAC,+,0.00)
mm_118446.1	chr14	8213918	8214118	+	1	NA	NA	NA	-63	NM_027782	71393	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0.135000	0.766169	
mm_157141.1	chrX	9459352	9459552	-	1	NA	NA	NA	9872	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.457711	
mm_5034.1	chr1	193301974	193302174	+	1	NA	NA	NA	80	NM_008484	16780	Mm.435441	NM_008484	ENSMUSG00000026639	Lamb3	-	laminin, beta 3	protein-coding	0.015000	0.601990	
mm_49763.1	chr6	34780771	34780971	+	1	NA	NA	NA	439	NM_001289656	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.150000	0.651741	
mm_127086.1	chr15	97731176	97731376	+	1	NA	NA	NA	129	NM_001168693	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.040000	0.557214	-33(CACTATAAAAGG,-,0.00),85(TCCTTTTAAAGA,-,0.00),86(CCTTTTAAAGAC,+,0.00)
mm_81612.1	chr9	110766135	110766335	+	1	NA	NA	NA	2554	NM_010859	17897	Mm.7353	NM_010859	ENSMUSG00000059741	Myl3	MLC1s|MLC1v|Mylc|VLC1	myosin, light polypeptide 3	protein-coding	0.005000	0.547264	
mm_123225.1	chr14	59597869	59598069	-	1	NA	NA	NA	-10	NM_001168536	71891	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0.075000	0.587065	
mm_10168.1	chr2	4559516	4559716	+	1	NA	NA	NA	-138	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.045000	0.552239	
mm_133164.1	chr16	70437583	70437783	+	1	NA	NA	NA	123734	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.005000	0.373134	
mm_114125.1	chr13	55210236	55210436	+	1	NA	NA	NA	554	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.120000	0.796020	
mm_155076.1	chrX	46328875	46329075	+	1	NA	NA	NA	-32	NM_028514	73360	Mm.60929	NM_028514	ENSMUSG00000046615	Actrt1	1700061J02Rik|Arp-T1	actin-related protein T1	protein-coding	0.000000	0.462687	
mm_84510.1	chr9	67031401	67031601	-	1	NA	NA	NA	12370	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.025000	0.492537	
mm_140870.1	chr17	23786007	23786207	-	1	NA	NA	NA	-30	NM_029798	76917	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	0.090000	0.636816	
mm_119196.1	chr14	32599292	32599492	+	1	NA	NA	NA	-16	NM_001347590	107751	Mm.119274	NM_001001796	ENSMUSG00000041730	Prrxl1	Drg11|Drgx	paired related homeobox protein-like 1	protein-coding	0.080000	0.597015	
mm_66503.1	chr7	45091594	45091794	-	1	NA	NA	NA	519	NM_026555	52377	Mm.29997	NM_026555	ENSMUSG00000019539	Rcn3	6030455P07Rik|D530026G20Rik|D7Ertd671e|RLP49	reticulocalbin 3, EF-hand calcium binding domain	protein-coding	0.035000	0.587065	
mm_124840.1	chr15	9370286	9370486	+	1	NA	NA	NA	34788	NM_144845	223337	Mm.422853	NM_144845	ENSMUSG00000049152	Ugt3a2	AI313915	UDP glycosyltransferases 3 family, polypeptide A2	protein-coding	0.015000	0.492537	
mm_116489.1	chr13	44480226	44480426	-	1	NA	NA	NA	40599	NR_045489	69491	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.015000	0.442786	
mm_57074.1	chr6	122578357	122578557	-	1	NA	NA	NA	23987	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.000000	0.487562	
mm_41539.1	chr5	92856391	92856591	+	1	NA	NA	NA	-41502	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.030000	0.537313	-87(GTTTTTATAACC,+,0.00)
mm_75945.1	chr8	71578947	71579147	-	1	NA	NA	NA	10120	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.000000	0.567164	
mm_71108.1	chr8	35602817	35603017	+	1	NA	NA	NA	-13897	NR_040376	100504714	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0.010000	0.442786	
mm_31977.1	chr4	88868387	88868587	+	1	NA	NA	NA	11714	NM_177348	230405	Mm.246593	NM_177348	ENSMUSG00000045364	Ifne	Ifn-tau-1|Ifne1|Ifnt1|Infe1	interferon epsilon	protein-coding	0.040000	0.587065	
mm_122079.1	chr14	30607692	30607892	-	1	NA	NA	NA	2518	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.015000	0.631841	
mm_87920.1	chr10	62505759	62505959	+	1	NA	NA	NA	1896	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.005000	0.422886	
mm_114382.1	chr13	63240456	63240656	+	1	NA	NA	NA	527	NR_110521	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.040000	0.582090	
mm_64142.1	chr7	141216535	141216735	+	1	NA	NA	NA	775	NM_025886	66985	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	0.005000	0.611940	
mm_82698.1	chr9	22390395	22390595	-	1	NA	NA	NA	-1289	NM_028390	68743	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0.005000	0.417910	
mm_171826.1	chr5	143086179	143086379	-	1	NA	NA	NA	26741	NM_207110	108086	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.100000	0.587065	
mm_137743.1	chr17	29369092	29369292	+	1	NA	NA	NA	8278	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.010000	0.572139	
mm_149755.1	chr19	22733441	22733641	+	1	NA	NA	NA	-17064	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.000000	0.388060	
mm_81537.1	chr9	110197623	110197823	+	1	NA	NA	NA	-46060	NM_013884	29873	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding	0.025000	0.527363	
mm_34381.1	chr4	144906950	144907150	+	1	NA	NA	NA	13913	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.005000	0.517413	
mm_22023.1	chr2	168010559	168010759	-	1	NA	NA	NA	-66	NM_001080708	69553	Mm.68454	NM_001080708	ENSMUSG00000074577	Fam65c	2310033K02Rik|Gm124	family with sequence similarity 65, member C	protein-coding	0.015000	0.587065	
mm_74644.1	chr8	13306561	13306761	-	1	NA	NA	NA	-18535	NM_001042650	102323	Mm.368890	NM_001024504	ENSMUSG00000038506	Dcun1d2	AW495713|mFLJ10704	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	protein-coding	0.025000	0.507463	
mm_61432.1	chr7	73816474	73816674	+	1	NA	NA	NA	-71	NR_077222	100579147	Mm.109205	NR_077222	ENSMUSG00000074067	Gm10619	4932443D20|ENSMUSG00000074067	predicted gene 10619	ncRNA	0.000000	0.477612	
mm_103305.1	chr11	72608362	72608562	-	1	NA	NA	NA	1201	NM_025985	67128	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	0.065000	0.651741	23(CCCCCTAAAAAG,-,0.00),25(CCCTAAAAAGTC,+,0.00)
mm_92551.1	chr10	79762423	79762623	-	1	NA	NA	NA	4429	NM_144528	70294	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0.010000	0.611940	
mm_24378.1	chr3	90248112	90248312	+	1	NA	NA	NA	20	NM_013901	30791	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0.075000	0.681592	
mm_56239.1	chr6	90670382	90670582	-	1	NA	NA	NA	46047	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.020000	0.552239	
mm_93996.1	chr10	127539275	127539475	-	1	NA	NA	NA	-4816	NM_183297	104080	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.020000	0.517413	
mm_156846.1	chrX	164391632	164391832	+	1	NA	NA	NA	18210	NM_010216	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.025000	0.517413	
mm_80844.1	chr9	98287355	98287555	+	1	NA	NA	NA	-9128	NM_144533	74080	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	0.005000	0.507463	
mm_2927.1	chr1	132226231	132226431	+	1	NA	NA	NA	17	NM_001311103	213409	Mm.426321	NM_001033250	ENSMUSG00000079330	Lemd1	4930540I23Rik|6430514M23Rik|AI428128|LEMP-1	LEM domain containing 1	protein-coding	0.005000	0.417910	
mm_91278.1	chr10	24692322	24692522	-	1	NA	NA	NA	19737	NM_001308327	18605	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	0.010000	0.452736	
mm_107316.1	chr12	31265378	31265578	+	1	NA	NA	NA	184	NM_008482	16777	Mm.172674	NM_008482	ENSMUSG00000002900	Lamb1	C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1	laminin B1	protein-coding	0.055000	0.636816	
mm_112597.1	chr13	14090913	14091113	+	1	NA	NA	NA	27229	NM_198122	94246	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.020000	0.472637	
mm_99809.1	chr11	108381117	108381317	+	1	NA	NA	NA	-14080	NM_013475	11818	Mm.2266	NM_013475	ENSMUSG00000000049	Apoh	B2GPI|beta-2-GPI|beta2-GPI	apolipoprotein H	protein-coding	0.015000	0.507463	-69(CCTTTTAGGAGG,+,0.00)
mm_120694.1	chr14	70889935	70890135	+	1	NA	NA	NA	-72	NM_001302095	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.080000	0.706468	
mm_129197.1	chr15	76509566	76509766	-	1	NA	NA	NA	2152	NM_010046	13350	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	0.005000	0.537313	
mm_152286.1	chr19	8929230	8929430	-	1	NA	NA	NA	26	NM_009073	19881	Mm.426094	NM_009073	ENSMUSG00000071648	Rom1	M101156|Rgsc1156|Rom-1|Rosp1|Tspan23	rod outer segment membrane protein 1	protein-coding	0.035000	0.597015	
mm_14592.1	chr2	136057991	136058191	+	1	NA	NA	NA	164	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.030000	0.547264	
mm_133975.1	chr16	4475092	4475292	-	1	NA	NA	NA	47861	NM_175347	106393	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	0.105000	0.636816	
mm_39061.1	chr4	154025572	154025772	-	1	NA	NA	NA	372	NM_001163722	68859	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	0.015000	0.577114	40(CTTTATTTAAGG,-,0.00)
mm_165398.1	chr2	136011911	136012111	+	1	NA	NA	NA	-45916	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.005000	0.368159	
mm_76514.1	chr8	87469814	87470014	-	1	NA	NA	NA	2678	NM_019626	12404	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0.035000	0.477612	
mm_36761.1	chr4	101356331	101356531	-	1	NA	NA	NA	-183	NR_040708	77866	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0.185000	0.830846	
mm_101125.1	chr11	12037299	12037499	-	1	NA	NA	NA	21	NM_010345	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.135000	0.736318	
mm_115036.1	chr13	99369661	99369861	+	1	NA	NA	NA	24975	NM_173757	218506	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	0.010000	0.407960	
mm_10386.1	chr2	12923983	12924183	+	1	NA	NA	NA	42	NM_001305437	19212	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0.055000	0.621891	
mm_28332.1	chr3	89382854	89383054	-	1	NA	NA	NA	-8910	NR_040403	545539	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	ENSMUSG00000074466|OTTMUSG00000021274	predicted gene 15417	ncRNA	0.025000	0.507463	
mm_6375.1	chr1	72537092	72537292	-	1	NA	NA	NA	-628	NM_001045533	381270	Mm.337023	NM_001045533	ENSMUSG00000039372	March4	BC056494|mKIAA1399	membrane-associated ring finger (C3HC4) 4	protein-coding	0.060000	0.646766	
mm_172653.1	chr8	3584143	3584343	-	1	NA	NA	NA	-3207	NM_001347112	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.045000	0.567164	
mm_8241.1	chr1	138494087	138494287	-	1	NA	NA	NA	125570	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.005000	0.358209	
mm_70437.1	chr8	11644563	11644763	+	1	NA	NA	NA	-8906	NM_001281974	102334	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	0.030000	0.487562	-33(TTCTATAAAAGT,-,0.00)
mm_161031.1	chr12	13362198	13362398	+	1	NA	NA	NA	93171	NM_027706	71169	Mm.177520	NM_027706	ENSMUSG00000020576	Nbas	4933425L03Rik|Nag	neuroblastoma amplified sequence	protein-coding	0.000000	0.497512	
mm_5835.1	chr1	52817710	52817910	-	1	NA	NA	NA	-122	NM_008384	16329	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	0.055000	0.666667	
mm_8551.1	chr1	155230096	155230296	-	1	NA	NA	NA	71493	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.030000	0.557214	
mm_21502.1	chr2	163509537	163509737	-	1	NA	NA	NA	2780	NM_001312907	15378	Mm.202383	NM_008261	ENSMUSG00000017950	Hnf4a	HNF-4|Hnf4|Hnf4alpha|MODY1|Nr2a1|TCF-14|Tcf14	hepatic nuclear factor 4, alpha	protein-coding	0.010000	0.402985	
mm_114077.1	chr13	54503693	54503893	+	1	NA	NA	NA	-12	NM_176987	319719	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	0.140000	0.741294	
mm_73131.1	chr8	94923598	94923798	+	1	NA	NA	NA	4	NM_001145972	382045	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	0.025000	0.562189	-87(GGCCAGAAAAGC,-,0.00)
mm_99904.1	chr11	109668524	109668724	+	1	NA	NA	NA	17703	NM_001313976	19084	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.010000	0.462687	
mm_12377.1	chr2	69822860	69823060	+	1	NA	NA	NA	590	NM_177784	277396	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	0.165000	0.796020	
mm_83753.1	chr9	51278458	51278658	-	1	NA	NA	NA	-4	NM_001195681	100502940	Mm.235705	NM_001195681	ENSMUSG00000079559	Gm684	-	predicted gene 684	protein-coding	0.045000	0.646766	
mm_135914.1	chr16	67602468	67602668	-	1	NA	NA	NA	18340	NM_001347247	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.005000	0.323383	7(CACTTTAAAAAG,-,0.00)
mm_11554.1	chr2	32737274	32737474	+	1	NA	NA	NA	3642	NM_027529	70730	Mm.401360	NM_027529	ENSMUSG00000009551	6330409D20Rik	AA517851	RIKEN cDNA 6330409D20 gene	protein-coding	0.025000	0.557214	
mm_66995.1	chr7	64373990	64374190	-	1	NA	NA	NA	5	NM_177893	330554	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.065000	0.621891	
mm_99530.1	chr11	103181600	103181800	+	1	NA	NA	NA	10562	NM_019679	57778	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.020000	0.482587	
mm_28632.1	chr3	95190665	95190865	-	1	NA	NA	NA	26426	NM_011351	20360	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	0.020000	0.452736	
mm_13065.1	chr2	91115598	91115798	+	1	NA	NA	NA	-2446	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.025000	0.487562	-17(CTTTTTAAAAAG,+,0.00),-17(CTTTTTAAAAAG,-,0.00)
mm_67685.1	chr7	89338816	89339016	-	1	NA	NA	NA	-129	NM_028343	72759	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.065000	0.597015	
mm_30488.1	chr3	155093117	155093317	-	1	NA	NA	NA	161	NM_029330	75540	Mm.35218	NM_029330	ENSMUSG00000053870	Fpgt	1700016E03Rik	fucose-1-phosphate guanylyltransferase	protein-coding	0.045000	0.582090	
mm_17115.1	chr2	24472498	24472698	-	1	NA	NA	NA	3001	NM_011040	18510	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0.020000	0.298507	16(TTCTCTAAAAGC,-,0.00)
mm_17819.1	chr2	33755176	33755376	-	1	NA	NA	NA	-50540	NR_045729	320482	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0.020000	0.557214	
mm_47095.1	chr5	117909421	117909621	-	1	NA	NA	NA	42682	NM_008712	18125	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.015000	0.542289	-35(GCTTTAAGACCC,+,0.00)
mm_2403.1	chr1	93754891	93755091	+	1	NA	NA	NA	-42	NM_174874	66615	Mm.29087	NM_174874	ENSMUSG00000026280	Atg4b	2510009N07Rik|AW048066|Apg4b|Atg4bl|Autl1	autophagy related 4B, cysteine peptidase	protein-coding	0.170000	0.756219	
mm_143036.1	chr17	56709765	56709965	-	1	NA	NA	NA	7056	NM_178926	106639	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0.005000	0.497512	
mm_10333.1	chr2	11553932	11554132	+	1	NA	NA	NA	-103	NM_001177758	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.115000	0.716418	
mm_145715.1	chr18	62977793	62977993	+	1	NA	NA	NA	-23	NM_028017	108123	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0.095000	0.601990	
mm_49528.1	chr6	30047914	30048114	+	1	NA	NA	NA	26	NM_001164226	18181	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	0.145000	0.771144	
mm_97193.1	chr11	75576844	75577044	+	1	NA	NA	NA	-11135	NM_008850	18738	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.010000	0.557214	
mm_15288.1	chr2	155276823	155277023	+	1	NA	NA	NA	559	NR_046364	66734	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0.110000	0.746269	
mm_130242.1	chr15	96638092	96638292	-	1	NA	NA	NA	3770	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.005000	0.447761	
mm_101032.1	chr11	8587182	8587382	-	1	NA	NA	NA	77253	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.015000	0.472637	
mm_136116.1	chr16	85801182	85801382	-	1	NA	NA	NA	1831	NM_009621	11504	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	0.040000	0.522388	75(CCTTTTCTAGAT,+,0.00)
mm_2122.1	chr1	87900378	87900578	+	1	NA	NA	NA	-46179	NR_136921	100503175	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.000000	0.422886	
mm_117964.1	chr13	99516458	99516658	-	1	NA	NA	NA	44	NM_008634	17755	Mm.4173	NM_008634	ENSMUSG00000052727	Map1b	A230055D22|AI843217|LC1|MAP5|Mtap-5|Mtap1b|Mtap5	microtubule-associated protein 1B	protein-coding	0.095000	0.681592	
mm_134934.1	chr16	31141991	31142191	-	1	NA	NA	NA	59147	NM_030138	78618	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.015000	0.502488	
mm_104347.1	chr11	94253761	94253961	-	1	NA	NA	NA	-11282	NM_181819	278507	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	0.040000	0.582090	
mm_100812.1	chr11	5098990	5099190	-	1	NA	NA	NA	-2	NM_001283061	14030	Mm.142822	NM_007968	ENSMUSG00000009079	Ewsr1	Ews|Ewsh	Ewing sarcoma breakpoint region 1	protein-coding	0.130000	0.661692	
mm_62501.1	chr7	101993169	101993369	+	1	NA	NA	NA	23426	NM_133947	101706	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	0.015000	0.507463	
mm_120959.1	chr14	77520055	77520255	+	1	NA	NA	NA	-13287	NR_033141	629678	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	0.010000	0.388060	
mm_5953.1	chr1	56971173	56971373	-	1	NA	NA	NA	61	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.020000	0.527363	
mm_96530.1	chr11	68539515	68539715	+	1	NA	NA	NA	-16571	NM_146004	215723	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	0.010000	0.442786	-24(GCCTAGATAAAG,-,0.00)
mm_160698.1	chr10	41071558	41071758	-	1	NA	NA	NA	-74	NM_199058	140741	Mm.290693	NM_199058	ENSMUSG00000046922	Gpr6	AI852874|Gm233	G protein-coupled receptor 6	protein-coding	0.065000	0.552239	
mm_23040.1	chr3	34764048	34764248	+	1	NA	NA	NA	-7927	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA	0.015000	0.547264	-88(CCCTATATACCT,+,0.00)
mm_85489.1	chr9	106133416	106133616	-	1	NA	NA	NA	-20608	NR_029549	387153		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	0.010000	0.507463	-100(GGCTATAAAGAC,-,0.00)
mm_161426.1	chr15	44196089	44196289	+	1	NA	NA	NA	54	NM_013696	22045	Mm.309350	NM_013696	ENSMUSG00000038760	Trhr	TRH-R1	thyrotropin releasing hormone receptor	protein-coding	0.025000	0.522388	27(GAGTTGAAAAGG,-,0.00)
mm_145807.1	chr18	65385977	65386177	+	1	NA	NA	NA	7811	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.000000	0.412935	
mm_156208.1	chrX	134601139	134601339	+	1	NA	NA	NA	60	NM_001313717	56258	Mm.315909	NM_019868	ENSMUSG00000045427	Hnrnph2	DXHXS1271E|Ftp-3|Ftp3|H'|HNRNP|Hnrph2	heterogeneous nuclear ribonucleoprotein H2	protein-coding	0.080000	0.517413	
mm_109781.1	chr12	119390591	119390791	+	1	NA	NA	NA	-52719	NM_001163136	238455	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0.015000	0.452736	
mm_156679.1	chrX	159341609	159341809	+	1	NA	NA	NA	-30486	NM_025437	66235	Mm.294623	NM_025437	ENSMUSG00000067194	Eif1ax	1500010B24Rik|AI426898|Eif1ay	eukaryotic translation initiation factor 1A, X-linked	protein-coding	0.005000	0.457711	
mm_10829.1	chr2	24386281	24386481	+	1	NA	NA	NA	984	NM_177611	215632	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.010000	0.577114	
mm_31910.1	chr4	84884338	84884538	+	1	NA	NA	NA	129	NM_177385	338349	Mm.440562	NM_175275	ENSMUSG00000038070	Cntln	AI448092|B430108F07Rik|D530005L17Rik	centlein, centrosomal protein	protein-coding	0.145000	0.721393	
mm_36648.1	chr4	94556670	94556870	-	1	NA	NA	NA	26	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.130000	0.656716	
mm_42362.1	chr5	114922123	114922323	+	1	NA	NA	NA	-1017	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.020000	0.482587	
mm_94995.1	chr11	31871597	31871797	+	1	NA	NA	NA	757	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.005000	0.358209	
mm_27489.1	chr3	54807642	54807842	-	1	NA	NA	NA	49	NM_133231	170767	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	0.145000	0.736318	
mm_126897.1	chr15	89500031	89500231	+	1	NA	NA	NA	274	NM_021423	58234	Mm.146855	NM_021423	ENSMUSG00000022623	Shank3	AI841104|SHANK3c-3|SHANK3c-4|Shank3b	SH3/ankyrin domain gene 3	protein-coding	0.120000	0.786070	
mm_159315.1	chr3	10183828	10184028	-	1	NA	NA	NA	-43	NM_001030305	18857	Mm.371777	NM_001030305	ENSMUSG00000052468	Pmp2	P2	peripheral myelin protein 2	protein-coding	0.010000	0.517413	
mm_34561.1	chr4	149647855	149648055	+	1	NA	NA	NA	7612	NR_105990	102465983		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.025000	0.373134	
mm_134329.1	chr16	16367159	16367359	-	1	NA	NA	NA	-8228	NM_001276340	74006	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	0.025000	0.537313	
mm_20987.1	chr2	152105948	152106148	-	1	NA	NA	NA	524	NM_029688	76650	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.075000	0.626866	
mm_30172.1	chr3	144202259	144202459	-	1	NA	NA	NA	-27	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.080000	0.661692	
mm_91271.1	chr10	24444984	24445184	-	1	NA	NA	NA	-150358	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.025000	0.452736	-10(CCTTTTAAACAG,+,0.00)
mm_164093.1	chr15	10223658	10223858	+	1	NA	NA	NA	-148	NM_001253781	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.010000	0.427861	
mm_73160.1	chr8	94995656	94995856	+	1	NA	NA	NA	11357	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.010000	0.502488	
mm_41252.1	chr5	88793835	88794035	+	1	NA	NA	NA	28922	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.015000	0.447761	
mm_93920.1	chr10	127070141	127070341	-	1	NA	NA	NA	20	NM_025982	67125	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	0.055000	0.567164	
mm_346.1	chr1	30952492	30952692	+	1	NA	NA	NA	-2837	NM_011200	19243	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	0.005000	0.338308	
mm_114564.1	chr13	74546465	74546665	+	1	NA	NA	NA	-52615	NM_146231	235956	Mm.296909	NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.005000	0.467662	
mm_81763.1	chr9	114390060	114390260	+	1	NA	NA	NA	552	NM_019922	56693	Mm.20904	NM_019922	ENSMUSG00000032431	Crtap	5730529N23Rik|CASP|Leprel3|P3h5	cartilage associated protein	protein-coding	0.095000	0.676617	
mm_172228.1	chr6	67267135	67267335	+	1	NA	NA	NA	256	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.100000	0.611940	
mm_162457.1	chr1	128417200	128417400	-	1	NA	NA	NA	116	NM_177445	226414	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	0.085000	0.651741	
mm_56754.1	chr6	116072957	116073157	-	1	NA	NA	NA	-78052	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.020000	0.462687	
mm_2242.1	chr1	91053457	91053657	+	1	NA	NA	NA	113	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.065000	0.606965	
mm_161170.1	chr13	37888746	37888946	+	1	NA	NA	NA	-25	NM_001177869	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.000000	0.447761	
mm_67923.1	chr7	99865229	99865429	-	1	NA	NA	NA	6111	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.010000	0.457711	
mm_47230.1	chr5	121384752	121384952	-	1	NA	NA	NA	763	NM_001163470	231712	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.025000	0.393035	
mm_3396.1	chr1	143640686	143640886	+	1	NA	NA	NA	89	NM_020025	26878	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.025000	0.487562	
mm_135214.1	chr16	36642697	36642897	-	1	NA	NA	NA	23280	NM_019388	12524	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.020000	0.537313	
mm_104200.1	chr11	87987382	87987582	-	1	NA	NA	NA	51	NM_026556	68097	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	0.185000	0.800995	
mm_119145.1	chr14	31336545	31336745	+	1	NA	NA	NA	-79	NM_009796	12339	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.130000	0.761194	
mm_27564.1	chr3	58577612	58577812	-	1	NA	NA	NA	1054	NM_001040396	69227	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	0.015000	0.388060	57(TGGTTTAAATGC,-,0.00)
mm_10011.1	chr1	191872104	191872304	-	1	NA	NA	NA	-34577	NM_009579	22782	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	0.005000	0.507463	
mm_114785.1	chr13	89051309	89051509	+	1	NA	NA	NA	229937	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.000000	0.432836	
mm_113750.1	chr13	44731187	44731387	+	1	NA	NA	NA	16	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.065000	0.582090	-50(TTGTATAAAAGC,-,0.00),-35(GTCCATTTAAAG,-,0.00),-33(CCATTTAAAGTT,+,0.00)
mm_82313.1	chr9	7872875	7873075	-	1	NA	NA	NA	195	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.040000	0.661692	
mm_169215.1	chr13	66680974	66681174	+	1	NA	NA	NA	224276	NM_026219	67530	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	0.005000	0.517413	
mm_91898.1	chr10	60002996	60003196	-	1	NA	NA	NA	39	NM_001347451	52717	Mm.21793	NM_025514	ENSMUSG00000020107	Anapc16	2310005G07Rik|APC16|D10Ertd641e	anaphase promoting complex subunit 16	protein-coding	0.140000	0.721393	
mm_89058.1	chr10	82881766	82881966	+	1	NA	NA	NA	15240	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.035000	0.462687	53(AAGTTTATAAGG,-,0.00),55(GTTTATAAGGCA,+,0.00)
mm_151306.1	chr19	55742678	55742878	+	1	NA	NA	NA	968	NM_001142923	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.120000	0.671642	
mm_28825.1	chr3	96292323	96292523	-	1	NA	NA	NA	1546	NM_010186	14129	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0.015000	0.492537	
mm_33636.1	chr4	132973995	132974195	+	1	NA	NA	NA	0	NM_010208	14191	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.045000	0.621891	
mm_116568.1	chr13	47043051	47043251	-	1	NA	NA	NA	66	NM_016785	22017	Mm.10169	NM_016785	ENSMUSG00000021376	Tpmt	AW106912	thiopurine methyltransferase	protein-coding	0.045000	0.582090	
mm_148072.1	chr18	72350431	72350631	-	1	NA	NA	NA	538	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.050000	0.611940	
mm_160828.1	chr11	45980311	45980511	+	1	NA	NA	NA	101	NM_173384	214105	Mm.66708	NM_173384	ENSMUSG00000040489	Sox30	-	SRY (sex determining region Y)-box 30	protein-coding	0.175000	0.825871	
mm_162500.1	chr1	139660889	139661089	-	1	NA	NA	NA	-100767	NM_015780	50702	Mm.220362	NM_015780	ENSMUSG00000057037	Cfhr1	AI194696|CFHRB|Cfhl1	complement factor H-related 1	protein-coding	0.005000	0.388060	
mm_113082.1	chr13	23839358	23839558	+	1	NA	NA	NA	24	NM_134069	105355	Mm.27038	NM_134069	ENSMUSG00000036083	Slc17a3	AW261723|Npt4	solute carrier family 17 (sodium phosphate), member 3	protein-coding	0.010000	0.452736	
mm_96365.1	chr11	67171004	67171204	+	1	NA	NA	NA	77	NM_001039545	17882	Mm.422801	NM_144961	ENSMUSG00000033196	Myh2	MHC2A|MyHC-IIa|Myh2a|Myhs-f|Myhs-f1|Myhsf1	myosin, heavy polypeptide 2, skeletal muscle, adult	protein-coding	0.025000	0.512438	-70(CCATATAAAAGA,-,0.00),-34(TGCTTTAAAAAG,-,0.00),-33(GCTTTAAAAAGC,+,0.00),-32(CTTTAAAAAGCT,+,0.00)
mm_48785.1	chr5	148553909	148554109	-	1	NA	NA	NA	-1221	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.035000	0.557214	
mm_63877.1	chr7	136894486	136894686	+	1	NA	NA	NA	-25	NM_008598	17314	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding	0.060000	0.631841	
mm_98566.1	chr11	95384802	95385002	+	1	NA	NA	NA	-20	NM_016752	110172	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	Ugalt2	solute carrier family 35, member B1	protein-coding	0.115000	0.671642	
mm_71459.1	chr8	46527122	46527322	+	1	NA	NA	NA	-24847	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.035000	0.577114	
mm_60036.1	chr7	31035148	31035348	+	1	NA	NA	NA	5069	NR_106017	102465635		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.045000	0.577114	
mm_30643.1	chr4	8822714	8822914	+	1	NA	NA	NA	132408	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.035000	0.467662	
mm_1059.1	chr1	58973545	58973745	+	1	NA	NA	NA	74	NM_172656	227154	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	0.090000	0.731343	
mm_8552.1	chr1	155232483	155232683	-	1	NA	NA	NA	73880	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.035000	0.572139	-82(TACCATTAAAGC,-,0.00)
mm_20448.1	chr2	129364703	129364903	-	1	NA	NA	NA	-5099	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.010000	0.432836	
mm_58062.1	chr6	136872401	136872601	-	1	NA	NA	NA	3322	NM_008597	17313	Mm.243085	NM_008597	ENSMUSG00000030218	Mgp	Mglap	matrix Gla protein	protein-coding	0.025000	0.432836	
mm_48472.1	chr5	140965168	140965368	-	1	NA	NA	NA	35328	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.010000	0.527363	
mm_9545.1	chr1	173912895	173913095	-	1	NA	NA	NA	51	NM_001301745	381308	Mm.490248	NM_001033450	ENSMUSG00000026536	Ifi211	A730048F03|Ifi205b|Mnda|ifi-205-B	interferon activated gene 211	protein-coding	0.010000	0.467662	
mm_21273.1	chr2	156881164	156881364	-	1	NA	NA	NA	5814	NM_029983	77799	Mm.29264	NM_029983	ENSMUSG00000027636	Sla2	A930009E21Rik|AI430952|SLAP-2|SLAP2	Src-like-adaptor 2	protein-coding	0.030000	0.552239	
mm_2572.1	chr1	118481353	118481553	+	1	NA	NA	NA	-22188	NR_027901	68204	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.020000	0.482587	-31(TCATTTAAAGGC,+,0.00),22(CAGCTTTAAAGG,-,0.00),23(AGCTTTAAAGGC,-,0.00),24(GCTTTAAAGGCA,+,0.00)
mm_135782.1	chr16	56886009	56886209	-	1	NA	NA	NA	54	NM_019631	56277	Mm.262328	NM_019631	ENSMUSG00000022754	Tmem45a	C630002M10Rik|M32486|p19.5	transmembrane protein 45a	protein-coding	0.025000	0.552239	
mm_62699.1	chr7	110221603	110221803	+	1	NA	NA	NA	0	NM_009302	20947	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.070000	0.696517	
mm_112195.1	chr12	113425620	113425820	-	1	NA	NA	NA	-63845	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.020000	0.492537	-84(GGCTCTAAAAAG,-,0.00)
mm_134912.1	chr16	30283069	30283269	-	1	NA	NA	NA	85	NM_028973	74488	Mm.290677	NM_028973	ENSMUSG00000052316	Lrrc15	5430427N11Rik|LIB	leucine rich repeat containing 15	protein-coding	0.080000	0.671642	
mm_151516.1	chr19	58738096	58738296	+	1	NA	NA	NA	9309	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.005000	0.462687	
mm_93428.1	chr10	108902159	108902359	-	1	NA	NA	NA	108716	NM_009306	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding	0.045000	0.502488	
mm_121021.1	chr14	79587575	79587775	+	1	NA	NA	NA	-16	NM_026474	67955	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0.105000	0.681592	
mm_169556.1	chr15	103655380	103655580	+	1	NA	NA	NA	-90399	NM_008134	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.030000	0.507463	
mm_153504.1	chr19	41358518	41358718	-	1	NA	NA	NA	26452	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.000000	0.417910	
mm_64033.1	chr7	140769954	140770154	+	1	NA	NA	NA	6222	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.005000	0.358209	
mm_15537.1	chr2	158383588	158383788	+	1	NA	NA	NA	8050	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.000000	0.412935	
mm_142889.1	chr17	51832595	51832795	-	1	NA	NA	NA	-48	NM_009122	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.130000	0.731343	17(CCCTTTAAACGC,+,0.00),18(CCTTTAAACGCC,+,0.00)
mm_31423.1	chr4	48056470	48056670	+	1	NA	NA	NA	5324	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.030000	0.502488	
mm_33318.1	chr4	129080414	129080614	+	1	NA	NA	NA	22243	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.030000	0.552239	
mm_146792.1	chr18	20114779	20114979	-	1	NA	NA	NA	-106	NM_013504	13505	Mm.33740	NM_013504	ENSMUSG00000044322	Dsc1	1110020A10Rik|AI507491	desmocollin 1	protein-coding	0.000000	0.527363	
mm_83540.1	chr9	46234376	46234576	-	1	NA	NA	NA	823	NM_001289833	11814	Mm.390161	NM_023114	ENSMUSG00000032081	Apoc3	apo-CIII|apoC-III	apolipoprotein C-III	protein-coding	0.030000	0.582090	
mm_162615.1	chr1	183345360	183345560	-	1	NA	NA	NA	24105	NM_177389	338366	Mm.41152	NM_177389		Mia3	9130229H14Rik|A930039G15Rik|AU022327|B230399H06Rik|C80126|Gm1525|TANGO1|Tango	melanoma inhibitory activity 3	protein-coding	0.125000	0.716418	
mm_127107.1	chr15	97854329	97854529	+	1	NA	NA	NA	-9927	NM_001204278	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.045000	0.467662	
mm_114673.1	chr13	80883297	80883497	+	1	NA	NA	NA	-25	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.070000	0.597015	-19(GCTCTTAAAGTG,+,0.00),77(GACTTTTTAAGA,-,0.00)
mm_107909.1	chr12	70974886	70975086	+	1	NA	NA	NA	363	NM_011184	19167	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0.105000	0.681592	
mm_141379.1	chr17	29078863	29079063	-	1	NA	NA	NA	163	NR_036469	100504267	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|OTTMUSG00000031656|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0.035000	0.552239	
mm_53561.1	chr6	137136451	137136651	+	1	NA	NA	NA	33167	NM_001164214	232441	Mm.46233	NM_181988	ENSMUSG00000030222	Rerg	-	RAS-like, estrogen-regulated, growth-inhibitor	protein-coding	0.010000	0.472637	
mm_57190.1	chr6	122849475	122849675	-	1	NA	NA	NA	6582	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.000000	0.398010	
mm_167277.1	chr8	35061879	35062079	+	1	NA	NA	NA	-96289	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.010000	0.452736	
mm_9841.1	chr1	184478043	184478243	-	1	NA	NA	NA	79548	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.020000	0.472637	
mm_77920.1	chr9	7352459	7352659	+	1	NA	NA	NA	5185	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.388060	
mm_138339.1	chr17	34903075	34903275	+	1	NA	NA	NA	4201	NM_145830	110147	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0.015000	0.577114	
mm_142986.1	chr17	56287795	56287995	-	1	NA	NA	NA	2616	NM_025836	66905	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	0.015000	0.562189	
mm_77909.1	chr9	7349626	7349826	+	1	NA	NA	NA	2352	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.407960	
mm_39056.1	chr4	153974920	153975120	-	1	NA	NA	NA	61	NM_007859	13368	Mm.388918	NM_007859	ENSMUSG00000029027	Dffb	40kDa|5730477D02Rik|CAD|CPAN|DFF40|Didff	DNA fragmentation factor, beta subunit	protein-coding	0.105000	0.601990	
mm_66311.1	chr7	39797643	39797843	-	1	NA	NA	NA	279977	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.005000	0.407960	-77(GCTTTTCTAGCT,+,0.00)
mm_125942.1	chr15	76248024	76248224	+	1	NA	NA	NA	-67	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.005000	0.631841	
mm_46502.1	chr5	105134516	105134716	-	1	NA	NA	NA	4936	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.388060	
mm_76548.1	chr8	88180101	88180301	-	1	NA	NA	NA	-19012	NM_001164499	214627	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0.020000	0.477612	-84(GTTTAAATAGAC,+,0.00),-27(TTCTATAAAAAC,-,0.00)
mm_121217.1	chr14	103054756	103054956	+	1	NA	NA	NA	7844	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.577114	-8(GGCCTTTAAGAG,-,0.00),-7(GCCTTTAAGAGC,-,0.00),-6(CCTTTAAGAGCT,+,0.00)
mm_133034.1	chr16	57352921	57353121	+	1	NA	NA	NA	-256	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.015000	0.507463	
mm_253.1	chr1	19237507	19237707	+	1	NA	NA	NA	25553	NM_001025305	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.005000	0.457711	
mm_81311.1	chr9	108392799	108392999	+	1	NA	NA	NA	65	NM_053216	112418	Mm.78287	NM_053216	ENSMUSG00000032611	1700102P08Rik	AI593206	RIKEN cDNA 1700102P08 gene	protein-coding	0.060000	0.636816	
mm_92144.1	chr10	67013182	67013382	-	1	NA	NA	NA	8207	NR_110511	102634101	Mm.445258	NR_110511		Gm31763	-	predicted gene, 31763	ncRNA	0.005000	0.462687	
mm_66982.1	chr7	63938750	63938950	-	1	NA	NA	NA	65	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.125000	0.726368	
mm_150652.1	chr19	41917059	41917259	+	1	NA	NA	NA	5288	NM_023418	18648	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	0.015000	0.442786	
mm_155111.1	chrX	48519400	48519600	+	1	NA	NA	NA	215	NM_011228	19337	Mm.2015	NM_011228	ENSMUSG00000031104	Rab33a	Rabs10	RAB33A, member RAS oncogene family	protein-coding	0.115000	0.641791	
mm_76725.1	chr8	94876230	94876430	-	1	NA	NA	NA	-18	NM_053246	114255	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	0.125000	0.726368	
mm_91878.1	chr10	59586013	59586213	-	1	NA	NA	NA	30579	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.005000	0.422886	
mm_58882.1	chr7	17087848	17088048	+	1	NA	NA	NA	13908	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.000000	0.487562	
mm_132017.1	chr16	26062144	26062344	+	1	NA	NA	NA	43540	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.005000	0.402985	
mm_41866.1	chr5	104440682	104440882	+	1	NA	NA	NA	4590	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.010000	0.383085	
mm_84661.1	chr9	71771468	71771668	-	1	NA	NA	NA	34	NM_026599	68178	Mm.99961	NM_026599	ENSMUSG00000032232	Cgnl1	4933421H10Rik|9930020M10Rik|AI503810|Jacop	cingulin-like 1	protein-coding	0.130000	0.796020	
mm_96963.1	chr11	70647218	70647418	+	1	NA	NA	NA	31	NM_027445	70510	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0.055000	0.577114	
mm_4553.1	chr1	177442441	177442641	+	1	NA	NA	NA	-2120	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.175000	0.860697	
mm_55819.1	chr6	83053703	83053903	-	1	NA	NA	NA	-718	NR_125891	11993	Mm.386752	NM_007517	ENSMUSG00000068328	Aup1	AA589454	ancient ubiquitous protein 1	protein-coding	0.060000	0.572139	
mm_111039.1	chr12	79192128	79192328	-	1	NA	NA	NA	-409	NM_021557	17252	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c	retinol dehydrogenase 11	protein-coding	0.020000	0.457711	
mm_108366.1	chr12	80800491	80800691	+	1	NA	NA	NA	10059	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.000000	0.363184	
mm_147631.1	chr18	58210472	58210672	-	1	NA	NA	NA	-646	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.120000	0.781095	
mm_113720.1	chr13	43765418	43765618	+	1	NA	NA	NA	-19594	NM_009856	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.030000	0.582090	
mm_119950.1	chr14	55023454	55023654	+	1	NA	NA	NA	8100	NM_026890	68966	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	0.000000	0.353234	
mm_173103.1	chrX	152910087	152910287	-	1	NA	NA	NA	-96282	NM_001137547	635253	Mm.426169	NM_001137547	ENSMUSG00000067215	Usp51	AV136873	ubiquitin specific protease 51	protein-coding	0.065000	0.606965	
mm_155203.1	chrX	56731461	56731661	+	1	NA	NA	NA	-200	NM_010211	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.155000	0.800995	
mm_6019.1	chr1	59094794	59094994	-	1	NA	NA	NA	6	NM_175200	73463	Mm.252811	NM_175200	ENSMUSG00000072295	Als2cr11	1700052H20Rik|4930408G06Rik	amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 11 (human)	protein-coding	0.065000	0.601990	
mm_150222.1	chr19	33961103	33961303	+	1	NA	NA	NA	-45	NM_026334	67717	Mm.329816	NM_026334	ENSMUSG00000024768	Lipf	2310051B21Rik|AV082900	lipase, gastric	protein-coding	0.000000	0.353234	10(TGGTATATAAGG,-,0.00)
mm_120529.1	chr14	67159149	67159349	+	1	NA	NA	NA	-74043	NM_010095	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.020000	0.472637	
mm_147519.1	chr18	52528267	52528467	-	1	NA	NA	NA	1354	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.035000	0.542289	
mm_91728.1	chr10	45289159	45289359	-	1	NA	NA	NA	-46	NM_024286	78977	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	0.060000	0.616915	
mm_86399.1	chr9	123968590	123968790	-	1	NA	NA	NA	2	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.005000	0.477612	
mm_43759.1	chr5	140607629	140607829	+	1	NA	NA	NA	388	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.145000	0.661692	
mm_74909.1	chr8	25240756	25240956	-	1	NA	NA	NA	-39314	NM_177089	320165	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.120000	0.756219	
mm_108370.1	chr12	80819328	80819528	+	1	NA	NA	NA	28896	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.010000	0.333333	22(CGTCCTAAAAGG,-,0.00)
mm_153205.1	chr19	34640676	34640876	-	1	NA	NA	NA	-33	NM_053217	112419	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	0.015000	0.497512	-90(TTTTTTAAAGGG,+,0.00)
mm_116419.1	chr13	41607693	41607893	-	1	NA	NA	NA	1577	NM_001163572	621976	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.015000	0.477612	
mm_14249.1	chr2	128127465	128127665	+	1	NA	NA	NA	-10	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.155000	0.781095	
mm_59753.1	chr7	28825109	28825309	+	1	NA	NA	NA	-129	NM_016772	51798	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.070000	0.537313	
mm_24636.1	chr3	94342042	94342242	+	1	NA	NA	NA	43	NM_025416	66198	Mm.180200	NM_025416	ENSMUSG00000028148	Them5	1110007B02Rik|1110038F21Rik	thioesterase superfamily member 5	protein-coding	0.010000	0.547264	
mm_17127.1	chr2	24818949	24819149	-	1	NA	NA	NA	-55897	NM_007579	12287	Mm.4424	NM_007579	ENSMUSG00000004113	Cacna1b	AW050276|AW060892|AW822256|BIII|Cav2.2|Cchn1a|alpha(1B)	calcium channel, voltage-dependent, N type, alpha 1B subunit	protein-coding	0.020000	0.398010	
mm_163639.1	chr13	60606866	60607066	+	1	NA	NA	NA	4755	NM_134062	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.015000	0.412935	
mm_29105.1	chr3	104818228	104818428	-	1	NA	NA	NA	-23	NM_001163441	17454	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0.045000	0.626866	
mm_162571.1	chr1	174191755	174191955	+	1	NA	NA	NA	19079	NM_011465	20739	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding	0.000000	0.208955	
mm_107702.1	chr12	55465756	55465956	+	1	NA	NA	NA	26791	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.035000	0.606965	
mm_105898.1	chr11	114982637	114982837	-	1	NA	NA	NA	7149	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.005000	0.462687	
mm_132227.1	chr16	32658827	32659027	+	1	NA	NA	NA	9270	NR_033493	675921	Mm.404316	NR_033493	ENSMUSG00000075265	Tnk2os	ENSMUSG00000075265|Gm10818	tyrosine kinase, non-receptor 2, opposite strand	ncRNA	0.070000	0.716418	
mm_103422.1	chr11	75594664	75594864	-	1	NA	NA	NA	5467	NR_110477	654359	Mm.439961	NR_110477		Gm12338	OTTMUSG00000006216	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.020000	0.522388	
mm_64689.1	chr7	4518255	4518455	-	1	NA	NA	NA	-2380	NM_011618	21955	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0.025000	0.547264	
mm_82159.1	chr9	123781312	123781512	+	1	NA	NA	NA	14201	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.000000	0.417910	
mm_80214.1	chr9	72531643	72531843	+	1	NA	NA	NA	115	NR_045735	75115	Mm.280755	NR_045735	ENSMUSG00000096986	4930509E16Rik	-	RIKEN cDNA 4930509E16 gene	ncRNA	0.055000	0.592040	
mm_130118.1	chr15	89477345	89477545	-	1	NA	NA	NA	-21	NM_009713	11883	Mm.620	NM_009713	ENSMUSG00000022620	Arsa	AS-A|ASA|AW212749|As-2|As2|TISP73	arylsulfatase A	protein-coding	0.020000	0.487562	
mm_170748.1	chr2	156180016	156180216	-	1	NA	NA	NA	122	NM_001291114	170791	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.080000	0.611940	
mm_70739.1	chr8	19141335	19141535	+	1	NA	NA	NA	676	NM_001286493	546038	Mm.99206	NM_001034905	ENSMUSG00000059463	Spag11b	EG546038|Ep2c/h|Spag11c/h	sperm associated antigen 11B	protein-coding	0.030000	0.467662	
mm_95427.1	chr11	50200351	50200551	+	1	NA	NA	NA	10369	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.010000	0.487562	
mm_5617.1	chr1	39738959	39739159	-	1	NA	NA	NA	-18070	NM_001145660	619289	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	0.020000	0.522388	
mm_101446.1	chr11	30197776	30197976	-	1	NA	NA	NA	381	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.060000	0.636816	
mm_76236.1	chr8	83574683	83574883	-	1	NA	NA	NA	8025	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.035000	0.611940	
mm_8951.1	chr1	164453697	164453897	-	1	NA	NA	NA	4558	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.005000	0.452736	
mm_1553.1	chr1	72942637	72942837	+	1	NA	NA	NA	-67872	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.010000	0.422886	
mm_168814.1	chr12	21784405	21784605	-	1	NA	NA	NA	-367069	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.110000	0.766169	
mm_70474.1	chr8	12385675	12385875	+	1	NA	NA	NA	4	NR_027975	434280	Mm.447484	NM_001013812	ENSMUSG00000047935	Gm5607	EG434280	predicted gene 5607	ncRNA	0.100000	0.547264	
mm_115069.1	chr13	101478852	101479052	+	1	NA	NA	NA	-81372	NR_046187	78136	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	0.000000	0.492537	
mm_96804.1	chr11	69981397	69981597	+	1	NA	NA	NA	-262	NM_018740	54351	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.105000	0.711443	
mm_538.1	chr1	37998032	37998232	+	1	NA	NA	NA	122	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.135000	0.716418	
mm_149543.1	chr19	12573425	12573625	+	1	NA	NA	NA	0	NM_026640	107373	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	0.025000	0.452736	
mm_53796.1	chr6	146752250	146752450	+	1	NA	NA	NA	27420	NM_172734	232533	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	0.000000	0.482587	
mm_30391.1	chr3	152247887	152248087	-	1	NA	NA	NA	18333	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.050000	0.447761	
mm_63972.1	chr7	139950306	139950506	+	1	NA	NA	NA	6550	NM_009482	22286	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	0.040000	0.557214	
mm_8660.1	chr1	156559252	156559452	-	1	NA	NA	NA	565	NM_001136104	11352	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0.105000	0.771144	
mm_7093.1	chr1	88699216	88699416	-	1	NA	NA	NA	2875	NM_177305	320982	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.010000	0.388060	
mm_6059.1	chr1	60498419	60498619	-	1	NA	NA	NA	68246	NM_001045513	77300	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0.010000	0.383085	85(TGGCATTAAAGG,-,0.00)
mm_29496.1	chr3	115933606	115933806	-	1	NA	NA	NA	45523	NM_027193	69740	Mm.5915	NM_027193	ENSMUSG00000033554	Dph5	2410012M04Rik|AU045680|C80186	diphthamide biosynthesis 5	protein-coding	0.025000	0.447761	-35(TCCTTTATAAAC,-,0.00)
mm_128721.1	chr15	64058900	64059100	-	1	NA	NA	NA	1448	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.005000	0.467662	
mm_34377.1	chr4	144895106	144895306	+	1	NA	NA	NA	2069	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.005000	0.522388	
mm_126780.1	chr15	86194738	86194938	+	1	NA	NA	NA	-8697	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.115000	0.706468	
mm_99784.1	chr11	107337918	107338118	+	1	NA	NA	NA	132702	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.010000	0.467662	
mm_55808.1	chr6	82939543	82939743	-	1	NA	NA	NA	126	NM_001308374	20355	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	0.130000	0.761194	
mm_53281.1	chr6	128676522	128676722	+	1	NA	NA	NA	14237	NM_053165	94071	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	0.005000	0.313433	
mm_35493.1	chr4	40948210	40948410	-	1	NA	NA	NA	-16	NM_001171739	12017	Mm.688	NM_009736	ENSMUSG00000028416	Bag1	BAG-1|Rap46	BCL2-associated athanogene 1	protein-coding	0.080000	0.666667	
mm_140673.1	chr17	12960612	12960812	-	1	NA	NA	NA	13	NM_009338	110460	Mm.439711	NM_009338	ENSMUSG00000023832	Acat2	AW742799|Tcp-1x|Tcp1-rs1	acetyl-Coenzyme A acetyltransferase 2	protein-coding	0.070000	0.641791	
mm_21130.1	chr2	154205368	154205568	-	1	NA	NA	NA	5088	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.015000	0.537313	
mm_121014.1	chr14	79535668	79535868	+	1	NA	NA	NA	20094	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.010000	0.402985	
mm_45799.1	chr5	87568799	87568999	-	1	NA	NA	NA	107	NM_016771	53315	Mm.6824	NM_016771	ENSMUSG00000029273	Sult1d1	5033411P13Rik|AI987815|ST1d1|SULT-N|Sultn	sulfotransferase family 1D, member 1	protein-coding	0.020000	0.383085	33(TCCTTTTAAAGA,-,0.00),34(CCTTTTAAAGAC,+,0.00)
mm_50175.1	chr6	41559568	41559768	+	1	NA	NA	NA	37892	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.020000	0.492537	
mm_28747.1	chr3	95754764	95754964	-	1	NA	NA	NA	113	NM_027931	71807	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	0.060000	0.577114	
mm_91604.1	chr10	41303018	41303218	-	1	NA	NA	NA	123	NM_133999	103199	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0.070000	0.671642	
mm_102336.1	chr11	57831665	57831865	-	1	NA	NA	NA	382	NM_008213	15110	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed transcript 1	protein-coding	0.060000	0.641791	
mm_122681.1	chr14	52014483	52014683	-	1	NA	NA	NA	-25	NM_001253695	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.190000	0.885572	
mm_88675.1	chr10	80019556	80019756	+	1	NA	NA	NA	-19	NM_027521	70719	Mm.243954	NM_027521	ENSMUSG00000035697	Hmha1	6330406L22Rik|AW539505|Ha-1	histocompatibility (minor) HA-1	protein-coding	0.030000	0.577114	
mm_4891.1	chr1	188680493	188680693	+	1	NA	NA	NA	327247	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.000000	0.457711	
mm_138539.1	chr17	35259253	35259453	+	1	NA	NA	NA	-3741	NM_010380	14964	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	0.010000	0.497512	
mm_111396.1	chr12	90738026	90738226	-	1	NA	NA	NA	911	NM_010050	13371	Mm.21389	NM_010050	ENSMUSG00000007682	Dio2	5DII|AI324267|DIOII	deiodinase, iodothyronine, type II	protein-coding	0.050000	0.592040	
mm_18389.1	chr2	60125613	60125813	-	1	NA	NA	NA	27	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.040000	0.512438	
mm_106484.1	chr11	120231429	120231629	-	1	NA	NA	NA	-1418	NM_001347621	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.080000	0.636816	
mm_148138.1	chr18	76555127	76555327	-	1	NA	NA	NA	292782	NM_001311070	17126	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0.010000	0.522388	
mm_60542.1	chr7	44480408	44480608	+	1	NA	NA	NA	-4009	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.477612	
mm_172337.1	chr7	11005622	11005822	+	1	NA	NA	NA	-23	NM_001013765	245109	Mm.131747	NM_001013765	ENSMUSG00000054272	Zscan4c	Gm397|XM_142517|Zscan4d	zinc finger and SCAN domain containing 4C	protein-coding	0.020000	0.477612	-34(CGCTATAAAAGG,-,0.00)
mm_95997.1	chr11	59208697	59208897	+	1	NA	NA	NA	436	NM_024210	67862	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	0.060000	0.641791	
mm_136275.1	chr16	91061494	91061694	-	1	NA	NA	NA	7551	NM_001163695	74387	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.010000	0.452736	
mm_82584.1	chr9	21224853	21225053	-	1	NA	NA	NA	1328	NR_106127	102465769		NR_106127	ENSMUSG00000098764	Mir7667	Gm27756|mmu-mir-7667	microRNA 7667	ncRNA	0.025000	0.497512	
mm_73380.1	chr8	105649221	105649421	+	1	NA	NA	NA	12783	NM_181322	13018	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0.000000	0.358209	-6(TTTTTTAAACAC,+,0.00)
mm_93636.1	chr10	117282248	117282448	-	1	NA	NA	NA	-76	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.005000	0.477612	46(GCTTAAATAGCA,+,0.00)
mm_50194.1	chr6	41852749	41852949	+	1	NA	NA	NA	5300	NM_008843	18716	Mm.214755	NM_008843	ENSMUSG00000058499	Pip	GCDFP-15|GP17|mSMGP	prolactin induced protein	protein-coding	0.010000	0.422886	
mm_98378.1	chr11	94076307	94076507	+	1	NA	NA	NA	32202	NM_001025429	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.010000	0.398010	
mm_155580.1	chrX	78125403	78125603	+	1	NA	NA	NA	36	NM_001085534	546335	Mm.476683	NM_001085534	ENSMUSG00000079521	Gm5938	EG546335|OBP6	predicted gene 5938	protein-coding	0.005000	0.407960	
mm_156652.1	chrX	157702737	157702937	+	1	NA	NA	NA	3864	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.015000	0.452736	
mm_76392.1	chr8	84844063	84844263	-	1	NA	NA	NA	2768	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.015000	0.467662	
mm_56186.1	chr6	88508530	88508730	-	1	NA	NA	NA	10170	NM_016906	53421	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0.045000	0.562189	
mm_89772.1	chr10	100485326	100485526	+	1	NA	NA	NA	1921	NM_001033332	237500	Mm.296805	NM_001033332	ENSMUSG00000036676	Tmtc3	9130014E20Rik|B130008E12Rik|mSmile	transmembrane and tetratricopeptide repeat containing 3	protein-coding	0.000000	0.412935	
mm_107848.1	chr12	69372495	69372695	+	1	NA	NA	NA	445	NM_007481	11845	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.160000	0.796020	
mm_95111.1	chr11	34075039	34075239	+	1	NA	NA	NA	27938	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.005000	0.482587	62(CCTTTTATACTA,+,0.00)
mm_160257.1	chr7	108367361	108367561	+	1	NA	NA	NA	-31	NM_146737	258732	Mm.377662	NM_146737	ENSMUSG00000109631	Olfr494	MOR204-10	olfactory receptor 494	protein-coding	0.005000	0.393035	
mm_151921.1	chr19	5799819	5800019	-	1	NA	NA	NA	2753	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.398010	
mm_152153.1	chr19	7240937	7241137	-	1	NA	NA	NA	185	NM_027643	70999	Mm.329605	NM_027643	ENSMUSG00000024764	Naa40	4931433E08Rik|AU023197|Nat11	N(alpha)-acetyltransferase 40, NatD catalytic subunit	protein-coding	0.165000	0.751244	
mm_95843.1	chr11	57518145	57518345	+	1	NA	NA	NA	399	NM_001168667	67726	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	0.075000	0.621891	
mm_4348.1	chr1	171864501	171864701	+	1	NA	NA	NA	24904	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.358209	
mm_122367.1	chr14	39392100	39392300	-	1	NA	NA	NA	-80229	NR_131973	432842	Mm.352566	NR_131973		LOC432842	-	uncharacterized LOC432842	ncRNA	0.005000	0.313433	
mm_61863.1	chr7	88430210	88430410	+	1	NA	NA	NA	37	NM_028238	72433	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	0.065000	0.656716	
mm_36705.1	chr4	97521418	97521618	-	1	NA	NA	NA	-60425	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.030000	0.502488	
mm_73679.1	chr8	111536743	111536943	+	1	NA	NA	NA	203	NM_001168621	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.105000	0.681592	
mm_61375.1	chr7	70365255	70365455	+	1	NA	NA	NA	-28	NR_045850	434198	Mm.389911	NR_045850	ENSMUSG00000100005	B130024G19Rik	-	RIKEN cDNA B130024G19 gene	ncRNA	0.035000	0.432836	
mm_55904.1	chr6	83697992	83698192	-	1	NA	NA	NA	12714	NR_075094	574519	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	0.020000	0.517413	
mm_133683.1	chr16	92497990	92498190	+	1	NA	NA	NA	-57	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	0.015000	0.512438	
mm_81408.1	chr9	109051888	109052088	+	1	NA	NA	NA	-2878	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.025000	0.567164	
mm_91410.1	chr10	31445855	31446055	-	1	NA	NA	NA	-34	NM_009413	21987	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding	0.090000	0.671642	
mm_157225.1	chrX	13846450	13846650	-	1	NA	NA	NA	6	NM_001284505	12361	Mm.327591	NM_009806	ENSMUSG00000031012	Cask	DXPri1|DXRib1|LIN-2|Pals3|mLin-2	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding	0.120000	0.761194	
mm_97652.1	chr11	79507453	79507653	+	1	NA	NA	NA	-3471	NM_019409	18377	Mm.93335	NM_019409	ENSMUSG00000049612	Omg	-	oligodendrocyte myelin glycoprotein	protein-coding	0.005000	0.393035	
mm_157976.1	chrX	93832607	93832807	-	1	NA	NA	NA	-612	NM_145630	236900	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	0.025000	0.462687	
mm_41000.1	chr5	77386924	77387124	+	1	NA	NA	NA	21021	NM_001159518	29817	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	0.020000	0.467662	-34(GGGTATTTAAAG,-,0.00)
mm_58814.1	chr7	16400218	16400418	+	1	NA	NA	NA	-878	NM_198631	330474	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.085000	0.681592	
mm_101912.1	chr11	49712553	49712753	-	1	NA	NA	NA	69	NM_212484	104625	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0.165000	0.756219	
mm_115358.1	chr13	112800863	112801063	+	1	NA	NA	NA	186	NM_008247	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.085000	0.676617	
mm_166581.1	chr6	52866398	52866598	+	1	NA	NA	NA	43122	NM_001168277	231986	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.015000	0.517413	
mm_162388.1	chr1	75400896	75401096	+	1	NA	NA	NA	911	NM_001173477	11790	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0.010000	0.552239	
mm_131019.1	chr15	103563347	103563547	-	1	NA	NA	NA	1634	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.000000	0.477612	
mm_88281.1	chr10	75130499	75130699	+	1	NA	NA	NA	69703	NM_001081412	110279	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.010000	0.587065	
mm_8536.1	chr1	155055082	155055282	-	1	NA	NA	NA	44454	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.015000	0.467662	-34(GGCTTTAAAAAC,-,0.00),-33(GCTTTAAAAACC,+,0.00),-32(CTTTAAAAACCC,+,0.00)
mm_12398.1	chr2	70142873	70143073	+	1	NA	NA	NA	103847	NM_177376	329421	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0.005000	0.417910	
mm_73176.1	chr8	95056574	95056774	+	1	NA	NA	NA	1571	NM_001042715	330830	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.020000	0.532338	
mm_59880.1	chr7	30291828	30292028	+	1	NA	NA	NA	175	NM_001081114	76686	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	0.045000	0.631841	
mm_62457.1	chr7	101451318	101451518	+	1	NA	NA	NA	166	NM_001243757	207728	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.075000	0.696517	
mm_111712.1	chr12	103701029	103701229	-	1	NA	NA	NA	-5600	NM_026687	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding	0.015000	0.487562	
mm_170450.1	chr18	84659631	84659831	-	1	NA	NA	NA	-9636	NM_177450	338403	Mm.23278	NM_177450	ENSMUSG00000056162	Cndp1	AI746433|Cn1	carnosine dipeptidase 1 (metallopeptidase M20 family)	protein-coding	0.015000	0.427861	
mm_60959.1	chr7	47515976	47516176	+	1	NA	NA	NA	-26494	NM_153101	235712	Mm.425459	NM_153101	ENSMUSG00000096719	Mrgpra2b	MrgA2|Mrgpra2|OTTMUSG00000028717	MAS-related GPR, member A2B	protein-coding	0.010000	0.477612	-84(GTCCCTTTAAGG,-,0.00),-83(TCCCTTTAAGGG,-,0.00),-82(CCCTTTAAGGGA,+,0.00),-81(CCTTTAAGGGAC,+,0.00),-34(CAGTATAAAAAC,-,0.00)
mm_13862.1	chr2	119742197	119742397	+	1	NA	NA	NA	-40	NM_146125	228550	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	0.145000	0.796020	
mm_55363.1	chr6	57535316	57535516	-	1	NA	NA	NA	10	NM_175523	243382	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.020000	0.432836	
mm_55105.1	chr6	50261666	50261866	-	1	NA	NA	NA	3	NM_018769	54722	Mm.248361	NM_018769	ENSMUSG00000029821	Dfna5	2310037D07Rik|4932441K13Rik|Dfna5h|EG14210|Fin15	deafness, autosomal dominant 5 (human)	protein-coding	0.120000	0.701493	
mm_154687.1	chrX	7922321	7922521	+	1	NA	NA	NA	2599	NM_013892	30052	Mm.4881	NM_013892	ENSMUSG00000039278	Pcsk1n	AI848336|KEP|PEN|PEN19|PEN20|Pan3|SAAS|SAASCT|bLEN|lLEN|proSAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding	0.100000	0.716418	
mm_72631.1	chr8	84664125	84664325	+	1	NA	NA	NA	-1373	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.075000	0.606965	
mm_170284.1	chr18	27599463	27599663	+	1	NA	NA	NA	-960601	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.020000	0.502488	
mm_66713.1	chr7	46030221	46030421	-	1	NA	NA	NA	-35	NM_018795	27421	Mm.63514	NM_018795	ENSMUSG00000030834	Abcc6	Abcc1b|DCC|Dyscalc1|Mrp6|dyscalc	ATP-binding cassette, sub-family C (CFTR/MRP), member 6	protein-coding	0.035000	0.626866	
mm_77685.1	chr8	125898207	125898407	-	1	NA	NA	NA	10	NM_175561	270109	Mm.145535	NM_175561	ENSMUSG00000060212	Pcnx2	A830048P05|AU067631|E330039K12Rik|Pcnxl2|mKIAA0435	pecanex homolog 2	protein-coding	0.080000	0.661692	
mm_29061.1	chr3	103778218	103778418	-	1	NA	NA	NA	12957	NM_001301306	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.030000	0.512438	
mm_87318.1	chr10	42860263	42860463	+	1	NA	NA	NA	-149	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.010000	0.412935	
mm_5846.1	chr1	52963169	52963369	-	1	NA	NA	NA	-10429	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.005000	0.482587	
mm_121430.1	chr14	120359344	120359544	+	1	NA	NA	NA	83775	NM_175341	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding	0.010000	0.497512	
mm_107655.1	chr12	52772987	52773187	+	1	NA	NA	NA	73704	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.010000	0.532338	
mm_51837.1	chr6	90301974	90302174	+	1	NA	NA	NA	804	NM_177738	243535	Mm.233854	NM_177738	ENSMUSG00000049694	BC048671	-	cDNA sequence BC048671	protein-coding	0.000000	0.547264	
mm_46559.1	chr5	106696729	106696929	-	1	NA	NA	NA	1	NM_026856	52397	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.085000	0.656716	
mm_141990.1	chr17	35172523	35172723	-	1	NA	NA	NA	3378	NM_019467	11629	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.015000	0.577114	
mm_34504.1	chr4	148667088	148667288	+	1	NA	NA	NA	23871	NM_001085505	230909	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	0.020000	0.512438	-96(CTCTTTAAATAG,-,0.00),-94(CTTTAAATAGCC,+,0.00)
mm_135205.1	chr16	36561693	36561893	-	1	NA	NA	NA	341	NM_013803	12374	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.065000	0.631841	
mm_59091.1	chr7	19696414	19696614	+	1	NA	NA	NA	1884	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.045000	0.601990	
mm_168513.1	chr1	156523964	156524164	+	1	NA	NA	NA	-34723	NM_009595	11352	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0.085000	0.626866	
mm_140475.1	chr17	94834806	94835006	+	1	NA	NA	NA	-107	NR_045963	100038746	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	0.020000	0.547264	
mm_159099.1	chr2	36687976	36688176	+	1	NA	NA	NA	72	NM_146938	258940	Mm.223338	NM_146938	ENSMUSG00000094764	Olfr346	MOR136-11	olfactory receptor 346	protein-coding	0.010000	0.542289	
mm_157899.1	chrX	77844967	77845167	-	1	NA	NA	NA	8433	NM_017471	54192	Mm.8034	NM_017471	ENSMUSG00000000003	Pbsn	PB|Prbs	probasin	protein-coding	0.015000	0.368159	
mm_154503.1	chrM	11830	12030	-	1	NA	NA	NA	NA	NA									0.000000	0.328358	
mm_117523.1	chr13	81633036	81633236	-	1	NA	NA	NA	8	NM_054053	110789	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.055000	0.661692	
mm_166552.1	chr6	41312222	41312422	+	1	NA	NA	NA	2388	NM_001003405	103964	Mm.333022	NM_001003405	ENSMUSG00000036938	Try5	1810049H19Rik|Tc|Tesp4	trypsin 5	protein-coding	0.010000	0.532338	
mm_63059.1	chr7	122067090	122067290	+	1	NA	NA	NA	-8	NM_138589	28018	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	0.110000	0.661692	-38(CCACTTAAAGGC,+,0.00)
mm_126369.1	chr15	80126456	80126656	+	1	NA	NA	NA	-6598	NM_025609	66513	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	0.015000	0.402985	
mm_78337.1	chr9	25265320	25265520	+	1	NA	NA	NA	12981	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.020000	0.393035	
mm_39720.1	chr5	28165265	28165465	+	1	NA	NA	NA	-331	NM_010134	13799	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	0.060000	0.482587	
mm_142058.1	chr17	35667482	35667682	-	1	NA	NA	NA	10	NM_175137	68915	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	0.120000	0.661692	
mm_109104.1	chr12	105336723	105336923	+	1	NA	NA	NA	-170	NR_125773	69952	Mm.158311	NR_045047	ENSMUSG00000097929	Tunar	2810011L19Rik|Tuna	Tcl1 upstream neural differentiation associated RNA	ncRNA	0.090000	0.696517	
mm_139920.1	chr17	70974147	70974347	+	1	NA	NA	NA	16269	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.035000	0.507463	
mm_93083.1	chr10	89533513	89533713	-	1	NA	NA	NA	9	NM_001163504	20186	Mm.3095	NM_009108	ENSMUSG00000047638	Nr1h4	AI957360|Fxr|HRR1|RIP14|Rxrip14	nuclear receptor subfamily 1, group H, member 4	protein-coding	0.020000	0.547264	
mm_88905.1	chr10	81179078	81179278	+	1	NA	NA	NA	217	NR_028549	100217454		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.035000	0.587065	
mm_82530.1	chr9	20667970	20668170	-	1	NA	NA	NA	15940	NM_023371	23988	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	0.030000	0.611940	
mm_22949.1	chr3	32364820	32365020	+	1	NA	NA	NA	-569	NR_027966	67576	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	0.045000	0.512438	
mm_86451.1	chr10	4334445	4334645	+	1	NA	NA	NA	53563	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.045000	0.606965	
mm_94973.1	chr11	30985357	30985557	+	1	NA	NA	NA	908	NM_026527	68044	Mm.32656	NM_026527	ENSMUSG00000020309	Chac2	-	ChaC, cation transport regulator 2	protein-coding	0.005000	0.308458	
mm_11362.1	chr2	30952886	30953086	+	1	NA	NA	NA	-15	NM_133673	30934	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.100000	0.641791	
mm_11098.1	chr2	28031993	28032193	+	1	NA	NA	NA	52785	NM_010190	14134	Mm.182935	NM_010190	ENSMUSG00000026835	Fcnb	Fcn2	ficolin B	protein-coding	0.040000	0.611940	
mm_31430.1	chr4	48085454	48085654	+	1	NA	NA	NA	34308	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.010000	0.442786	
mm_37371.1	chr4	120951581	120951781	-	1	NA	NA	NA	20	NM_001005788	381549	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	0.130000	0.771144	
mm_57765.1	chr6	129233923	129234123	-	1	NA	NA	NA	4022	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.020000	0.492537	
mm_162408.1	chr1	86504301	86504501	-	1	NA	NA	NA	-22335	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.080000	0.671642	
mm_123728.1	chr14	70167898	70168098	-	1	NA	NA	NA	-8496	NM_001004155	268759	Mm.12148	NM_001004155	ENSMUSG00000044551	9930012K11Rik	-	RIKEN cDNA 9930012K11 gene	protein-coding	0.030000	0.646766	
mm_116689.1	chr13	49308894	49309094	-	1	NA	NA	NA	214	NM_015759	30938	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.030000	0.502488	
mm_112211.1	chr12	113428441	113428641	-	1	NA	NA	NA	-61024	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.442786	
mm_138049.1	chr17	33926078	33926278	+	1	NA	NA	NA	-3716	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.025000	0.592040	
mm_166894.1	chr7	28302107	28302307	-	1	NA	NA	NA	-422	NM_007866	13389	Mm.12896	NM_007866	ENSMUSG00000003436	Dll3	pu|pudgy	delta-like 3 (Drosophila)	protein-coding	0.035000	0.562189	
mm_49318.1	chr6	18848549	18848749	+	1	NA	NA	NA	14	NM_133939	76522	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	0.115000	0.661692	
mm_63895.1	chr7	138848383	138848583	+	1	NA	NA	NA	2097	NM_026391	52432	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	0.015000	0.457711	-35(TTCTTTTAAAGA,-,0.00),-34(TCTTTTAAAGAC,+,0.00)
mm_153032.1	chr19	31764953	31765153	-	1	NA	NA	NA	-20	NM_001013833	19091	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0.035000	0.567164	40(CCTTTTAGACGC,+,0.00)
mm_165565.1	chr3	16183516	16183716	-	1	NA	NA	NA	433	NM_001145919	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.135000	0.766169	
mm_115632.1	chr13	12176767	12176967	-	1	NA	NA	NA	9621	NR_045170	328186	Mm.188154	NM_183202		Gm10336	B330003H21|ENSMUSG00000071543	predicted gene 10336	ncRNA	0.015000	0.462687	
mm_84452.1	chr9	66514482	66514682	-	1	NA	NA	NA	11	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.020000	0.542289	-7(CCCTTTCTGGGC,+,0.00)
mm_41812.1	chr5	103783721	103783921	+	1	NA	NA	NA	29248	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.035000	0.592040	
mm_31225.1	chr4	44032267	44032467	+	1	NA	NA	NA	19717	NM_001290470	12757	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.015000	0.407960	
mm_40187.1	chr5	36374779	36374979	+	1	NA	NA	NA	23260	NM_030889	81840	Mm.34113	NM_030889	ENSMUSG00000029093	Sorcs2	N28137|mKIAA1329	sortilin-related VPS10 domain containing receptor 2	protein-coding	0.030000	0.532338	-35(GGCTATTAAAGT,-,0.00)
mm_121775.1	chr14	19890308	19890508	-	1	NA	NA	NA	51483	NR_105025	52512	Mm.483998	NR_105025		D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.010000	0.452736	
mm_137875.1	chr17	31470945	31471145	+	1	NA	NA	NA	41442	NM_021322	57773	Mm.143771	NM_021322	ENSMUSG00000024037	Wdr4	AI415180|AI448349|D530049K22Rik	WD repeat domain 4	protein-coding	0.015000	0.562189	70(GCTTTAAGACTC,+,0.00)
mm_91467.1	chr10	34178479	34178679	-	1	NA	NA	NA	28972	NM_172508	212898	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.005000	0.303483	
mm_10206.1	chr2	5137664	5137864	+	1	NA	NA	NA	-12	NM_028804	74186	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	0.140000	0.731343	-34(CCCTTTTTAAGC,-,0.00)
mm_8158.1	chr1	136949347	136949547	-	1	NA	NA	NA	4183	NM_001159769	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	0.025000	0.592040	
mm_128862.1	chr15	72809853	72810053	-	1	NA	NA	NA	371	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.065000	0.577114	-14(GTCTCTAAAGAC,-,0.00)
mm_128351.1	chr15	39943633	39943833	-	1	NA	NA	NA	24	NM_172814	239393	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0.135000	0.781095	
mm_23594.1	chr3	64977439	64977639	+	1	NA	NA	NA	-131829	NM_010597	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.000000	0.442786	-81(CTTTTTAGGGAC,+,0.00)
mm_50852.1	chr6	54888923	54889123	+	1	NA	NA	NA	72107	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.005000	0.373134	
mm_36281.1	chr4	63860807	63861007	-	1	NA	NA	NA	377	NM_009403	21949	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.030000	0.527363	
mm_44023.1	chr5	147418553	147418753	+	1	NA	NA	NA	33	NR_033625	100039805	Mm.394705	NR_033625	ENSMUSG00000106820	D5Ertd605e	Gm2433	DNA segment, Chr 5, ERATO Doi 605, expressed	ncRNA	0.020000	0.507463	38(CCTCTTAAACTG,+,0.00)
mm_141404.1	chr17	29347673	29347873	-	1	NA	NA	NA	131	NM_019880	56462	Mm.285322	NM_019880	ENSMUSG00000024012	Mtch1	2310034O17Rik|AI255158|AU018396|C77849|PSAP	mitochondrial carrier 1	protein-coding	0.120000	0.761194	
mm_145157.1	chr18	46525116	46525316	+	1	NA	NA	NA	755	NM_173423	240263	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.075000	0.597015	
mm_135156.1	chr16	35858270	35858470	-	1	NA	NA	NA	13012	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.020000	0.457711	
mm_131493.1	chr16	17276571	17276771	+	1	NA	NA	NA	371	NM_177473	224019	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	0.085000	0.666667	
mm_145731.1	chr18	64264775	64264975	+	1	NA	NA	NA	10516	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.020000	0.497512	
mm_165979.1	chr4	102986305	102986505	+	1	NA	NA	NA	26	NM_026100	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.030000	0.537313	
mm_63800.1	chr7	132931257	132931457	+	1	NA	NA	NA	-18265	NM_207302	360216	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0.140000	0.805970	
mm_160165.1	chr7	44747921	44748121	-	1	NA	NA	NA	328	NM_001289836	243963	Mm.382935	NM_178734	ENSMUSG00000048012	Zfp473	D030014N22Rik|Znf473|zfp-100	zinc finger protein 473	protein-coding	0.030000	0.532338	
mm_104303.1	chr11	90637984	90638184	-	1	NA	NA	NA	24	NM_011505	20913	Mm.207203	NM_011505	ENSMUSG00000020546	Stxbp4	6030470M02Rik|Synip	syntaxin binding protein 4	protein-coding	0.100000	0.621891	
mm_142041.1	chr17	35267103	35267303	-	1	NA	NA	NA	4080	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.005000	0.502488	
mm_156904.1	chrX	169036541	169036741	+	1	NA	NA	NA	30	NR_109847	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.045000	0.646766	
mm_95647.1	chr11	53723847	53724047	+	1	NA	NA	NA	3153	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.020000	0.557214	
mm_82346.1	chr9	13826448	13826648	-	1	NA	NA	NA	505	NR_037622	74360	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding	0.075000	0.601990	
mm_70183.1	chr7	143766891	143767091	-	1	NA	NA	NA	2	NM_203492	381974	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	0.010000	0.547264	
mm_140820.1	chr17	23564039	23564239	-	1	NA	NA	NA	87	NM_001033496	449521	Mm.268582	NM_001033496	ENSMUSG00000071256	Zfp213	BC038178|D17Ertd197e	zinc finger protein 213	protein-coding	0.150000	0.761194	
mm_49412.1	chr6	28645304	28645504	+	1	NA	NA	NA	165056	NM_019776	56463	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.000000	0.368159	
mm_155617.1	chrX	83116701	83116901	+	1	NA	NA	NA	167931	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.010000	0.358209	
mm_139975.1	chr17	71781180	71781380	+	1	NA	NA	NA	-19	NM_001271483	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	0.025000	0.497512	
mm_70482.1	chr8	12395780	12395980	+	1	NA	NA	NA	361	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.085000	0.691542	
mm_155836.1	chrX	100777185	100777385	+	1	NA	NA	NA	14	NM_001177780	53310	Mm.4615	NM_016747	ENSMUSG00000000881	Dlg3	Dlgh3|SAP102|mKIAA1232	discs, large homolog 3 (Drosophila)	protein-coding	0.105000	0.716418	
mm_71334.1	chr8	45507412	45507612	+	1	NA	NA	NA	-276	NM_172752	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.025000	0.457711	
mm_88671.1	chr10	80017783	80017983	+	1	NA	NA	NA	968	NM_001347074	70719	Mm.243954	NM_027521	ENSMUSG00000035697	Hmha1	6330406L22Rik|AW539505|Ha-1	histocompatibility (minor) HA-1	protein-coding	0.045000	0.666667	
mm_72039.1	chr8	70841187	70841387	+	1	NA	NA	NA	-1567	NM_027560	70807	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	0.035000	0.597015	
mm_35559.1	chr4	41569388	41569588	-	1	NA	NA	NA	39	NM_001159583	71901	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	0.100000	0.676617	
mm_13443.1	chr2	105130873	105131073	+	1	NA	NA	NA	4444	NM_144783	22431	Mm.389339	NM_144783	ENSMUSG00000016458	Wt1	D630046I19Rik|Wt-1	Wilms tumor 1 homolog	protein-coding	0.070000	0.676617	
mm_93281.1	chr10	96163184	96163384	-	1	NA	NA	NA	-62923	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.005000	0.407960	
mm_163811.1	chr14	19416181	19416381	-	1	NA	NA	NA	186306	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.015000	0.348259	
mm_151200.1	chr19	53537577	53537777	+	1	NA	NA	NA	8359	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.005000	0.472637	
mm_12367.1	chr2	69821586	69821786	+	1	NA	NA	NA	-684	NM_177784	277396	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	0.015000	0.452736	
mm_171112.1	chr3	137600319	137600519	+	1	NA	NA	NA	-23253	NM_030143	73284	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	0.045000	0.522388	
mm_100507.1	chr11	120491867	120492067	+	1	NA	NA	NA	130	NM_013770	27376	Mm.3991	NM_013770	ENSMUSG00000025792	Slc25a10	Dic	solute carrier family 25 (mitochondrial carrier, dicarboxylate transporter), member 10	protein-coding	0.110000	0.701493	
mm_163971.1	chr14	55510377	55510577	+	1	NA	NA	NA	29	NM_001136057	12891	Mm.5249	NM_009947	ENSMUSG00000022212	Cpne6	AU067659|BB076446	copine VI	protein-coding	0.015000	0.666667	
mm_47374.1	chr5	122987324	122987524	-	1	NA	NA	NA	1675	NM_001003953	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.025000	0.636816	
mm_170058.1	chr17	30624187	30624387	-	1	NA	NA	NA	2618	NR_045287	67522	Mm.254797	NR_045287	ENSMUSG00000099474	1700097N02Rik	-	RIKEN cDNA 1700097N02 gene	ncRNA	0.080000	0.636816	
mm_22699.1	chr3	18054141	18054341	+	1	NA	NA	NA	-84	NM_021560	59058	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0.045000	0.452736	-34(CCTTTTATAAAG,+,0.00)
mm_2979.1	chr1	133129995	133130195	+	1	NA	NA	NA	-1071	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.005000	0.457711	
mm_33578.1	chr4	132515725	132515925	+	1	NA	NA	NA	-5369	NM_144907	230784	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0.020000	0.462687	
mm_44368.1	chr5	17812967	17813167	-	1	NA	NA	NA	22829	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.323383	-18(GAGTTTATAAAG,-,0.00),38(TCCTATAAAGGG,+,0.00),38(TCCTATAAAGGG,-,0.00)
mm_124606.1	chr15	3279191	3279391	+	1	NA	NA	NA	8314	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.005000	0.557214	
mm_113087.1	chr13	23880783	23880983	+	1	NA	NA	NA	10610	NM_001170638	20504	Mm.2656	NM_009198	ENSMUSG00000021335	Slc17a1	NAPI-1|Napi1|Npt1	solute carrier family 17 (sodium phosphate), member 1	protein-coding	0.005000	0.323383	
mm_57013.1	chr6	121173679	121173879	-	1	NA	NA	NA	-9888	NM_001304774	74043	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	0.010000	0.512438	
mm_87273.1	chr10	41810454	41810654	+	1	NA	NA	NA	-20	NM_001162908	140742	Mm.139418	NM_001013370	ENSMUSG00000038332	Sesn1	1110002G11Rik|AU044290|Pa26|Sest1	sestrin 1	protein-coding	0.075000	0.621891	
mm_111231.1	chr12	84760764	84760964	-	1	NA	NA	NA	12248	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.030000	0.532338	
mm_152435.1	chr19	10725206	10725406	-	1	NA	NA	NA	13668	NM_007650	12507	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	0.005000	0.567164	
mm_121869.1	chr14	20734471	20734671	-	1	NA	NA	NA	-9	NM_010811	17423	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0.095000	0.776119	
mm_158701.1	chrX	162072321	162072521	-	1	NA	NA	NA	87020	NM_001081052	195727	Mm.336313	NM_001081052	ENSMUSG00000059493	Nhs	Gm389|Gm48|Nhs1|Xcat	Nance-Horan syndrome (human)	protein-coding	0.005000	0.333333	
mm_34389.1	chr4	144927302	144927502	+	1	NA	NA	NA	34265	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.010000	0.502488	
mm_137928.1	chr17	32536496	32536696	+	1	NA	NA	NA	-33	NM_024442	70101	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0.005000	0.552239	
mm_21037.1	chr2	152490106	152490306	-	1	NA	NA	NA	-68	NM_001002791	442835	Mm.99065	NM_001002791	ENSMUSG00000027468	Defb22	9230002F21Rik	defensin beta 22	protein-coding	0.000000	0.507463	
mm_143927.1	chr17	85688164	85688364	-	1	NA	NA	NA	-10	NM_011380	20472	Mm.5039	NM_011380	ENSMUSG00000024134	Six2	-	sine oculis-related homeobox 2	protein-coding	0.150000	0.701493	
mm_5175.1	chr1	10719819	10720019	-	1	NA	NA	NA	26	NM_001289497	329093	Mm.336423	NM_177834	ENSMUSG00000042501	Cpa6	9030616D13Rik	carboxypeptidase A6	protein-coding	0.005000	0.557214	
mm_32094.1	chr4	98546576	98546776	+	1	NA	NA	NA	42	NM_001005787	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.015000	0.567164	
mm_159681.1	chr5	3893825	3894025	-	1	NA	NA	NA	8	NM_001013023	545725	Mm.99593	NM_172135	ENSMUSG00000040429	Mterf1a	4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b	mitochondrial transcription termination factor 1a	protein-coding	0.100000	0.686567	
mm_157631.1	chrX	56822227	56822427	-	1	NA	NA	NA	-2	NM_177293	320923	Mm.186745	NM_177293	ENSMUSG00000067878	Mtap7d3	4933424A10Rik|Map7d3	MAP7 domain containing 3	protein-coding	0.065000	0.651741	
mm_112096.1	chr12	112785062	112785262	-	1	NA	NA	NA	-23813	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.010000	0.497512	
mm_24413.1	chr3	90508991	90509191	+	1	NA	NA	NA	407	NM_001293776	66511	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	0.095000	0.741294	
mm_110407.1	chr12	45074373	45074573	-	1	NA	NA	NA	10	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.075000	0.691542	
mm_77657.1	chr8	124636906	124637106	-	1	NA	NA	NA	26363	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding	0.030000	0.601990	
mm_69766.1	chr7	141010573	141010773	-	1	NA	NA	NA	71	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.040000	0.537313	
mm_150493.1	chr19	39011625	39011825	+	1	NA	NA	NA	4706	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.020000	0.492537	
mm_90435.1	chr10	127634602	127634802	+	1	NA	NA	NA	-8284	NM_009284	20852	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.005000	0.492537	
mm_39201.1	chr4	156030597	156030797	-	1	NA	NA	NA	4355	NM_021985	21936	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	0.020000	0.557214	
mm_88982.1	chr10	81561134	81561334	+	1	NA	NA	NA	1790	NM_001276288	14797	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.040000	0.666667	
mm_142991.1	chr17	56290414	56290614	-	1	NA	NA	NA	-3	NM_025836	66905	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	0.045000	0.641791	
mm_109576.1	chr12	112146142	112146342	+	1	NA	NA	NA	34	NM_001097621	668303	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding	0.085000	0.716418	
mm_116986.1	chr13	56357097	56357297	-	1	NA	NA	NA	-5703	NR_046061	100038494	Mm.370447	NR_046061		Gm10782	ENSMUSG00000074885	predicted gene 10782	ncRNA	0.000000	0.547264	
mm_171294.1	chr3	90651823	90652023	-	1	NA	NA	NA	-2379	NM_199422	381493	Mm.291525	NM_199422	ENSMUSG00000063767	S100a7a	AY465109|Gm1020|S100A7L1|S100A7f|S100a15|S100a15a|S100a17l1	S100 calcium binding protein A7A	protein-coding	0.040000	0.437811	
mm_55302.1	chr6	54867455	54867655	-	1	NA	NA	NA	50639	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.010000	0.522388	
mm_128285.1	chr15	37007678	37007878	-	1	NA	NA	NA	-376	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.095000	0.681592	
mm_36365.1	chr4	76358133	76358333	-	1	NA	NA	NA	-1079947	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.000000	0.308458	
mm_96625.1	chr11	69156795	69156995	+	1	NA	NA	NA	-177	NM_009659	11686	Mm.340329	NM_009659	ENSMUSG00000032807	Alox12b	12R-LOX|Aloxe2|e-LOX2	arachidonate 12-lipoxygenase, 12R type	protein-coding	0.030000	0.601990	
mm_39247.1	chr5	3479616	3479816	+	1	NA	NA	NA	-64117	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.000000	0.422886	
mm_28840.1	chr3	96582497	96582697	-	1	NA	NA	NA	11584	NM_001293701	69870	Mm.292739	NM_027241	ENSMUSG00000028104	Polr3gl	2010003I19Rik	polymerase (RNA) III (DNA directed) polypeptide G like	protein-coding	0.000000	0.308458	
mm_38537.1	chr4	141571523	141571723	-	1	NA	NA	NA	25461	NR_030695	320456	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.000000	0.626866	
mm_95437.1	chr11	50224978	50225178	+	1	NA	NA	NA	-257	NM_145926	103534	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0.030000	0.577114	
mm_36764.1	chr4	101356641	101356841	-	1	NA	NA	NA	-493	NR_040708	77866	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0.040000	0.472637	
mm_49381.1	chr6	24603275	24603475	+	1	NA	NA	NA	5604	NM_053098	93677	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	0.010000	0.467662	
mm_122996.1	chr14	54992113	54992313	-	1	NA	NA	NA	2336	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.020000	0.582090	
mm_113075.1	chr13	23806946	23807146	+	1	NA	NA	NA	19	NM_144836	218103	Mm.24030	NM_144836	ENSMUSG00000036110	Slc17a2	C730032N17Rik|NPT3	solute carrier family 17 (sodium phosphate), member 2	protein-coding	0.015000	0.398010	
mm_53498.1	chr6	135362289	135362489	+	1	NA	NA	NA	-542	NM_010128	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.010000	0.512438	
mm_35861.1	chr4	49481003	49481203	-	1	NA	NA	NA	25455	NM_007519	12012	Mm.2859	NM_007519	ENSMUSG00000039653	Baat	AI118337|AI158864|BAT	bile acid-Coenzyme A: amino acid N-acyltransferase	protein-coding	0.005000	0.477612	
mm_155591.1	chrX	81070648	81070848	+	1	NA	NA	NA	104	NM_138751	192216	Mm.490421	NM_138751	ENSMUSG00000025666	Tmem47	3010015F07Rik|AI115536|BCMP1|Tm4sf10	transmembrane protein 47	protein-coding	0.100000	0.646766	
mm_145570.1	chr18	60911726	60911926	+	1	NA	NA	NA	-414	NM_001038499	545260	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	0.035000	0.636816	
mm_75986.1	chr8	72350903	72351103	-	1	NA	NA	NA	31941	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.040000	0.412935	
mm_160320.1	chr7	143742056	143742256	-	1	NA	NA	NA	-193	NM_024289	79196	Mm.21199	NM_024289	ENSMUSG00000037606	Osbpl5	1110006M06Rik|AI462538|ORP5|Obph1|Osbp2	oxysterol binding protein-like 5	protein-coding	0.005000	0.532338	
mm_40261.1	chr5	38277079	38277279	+	1	NA	NA	NA	-225	NM_172709	21906	Mm.204765	NM_172709	ENSMUSG00000051596	Otop1	A530025J20Rik|Otp1|tlt	otopetrin 1	protein-coding	0.085000	0.726368	
mm_42111.1	chr5	110597589	110597789	+	1	NA	NA	NA	-5816	NM_001122639	231605	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	0.005000	0.462687	
mm_3517.1	chr1	150107376	150107576	+	1	NA	NA	NA	7445	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.000000	0.293532	
mm_70318.1	chr8	4248158	4248358	+	1	NA	NA	NA	44	NM_001195258	100044509	Mm.439193	NM_001195258	ENSMUSG00000089736	Tgfbr3l	Gm14378|OTTMUSG00000016477	transforming growth factor, beta receptor III-like	protein-coding	0.040000	0.666667	
mm_59102.1	chr7	19697494	19697694	+	1	NA	NA	NA	804	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.030000	0.577114	
mm_89184.1	chr10	86345963	86346163	+	1	NA	NA	NA	45651	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.010000	0.457711	
mm_99562.1	chr11	103697646	103697846	+	1	NA	NA	NA	22	NR_102396	399609	Mm.351922	NR_102388		C130046K22Rik	-	RIKEN cDNA C130046K22 gene	ncRNA	0.105000	0.691542	
mm_104779.1	chr11	98546038	98546238	-	1	NA	NA	NA	-107	NM_011771	22780	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.065000	0.532338	
mm_99696.1	chr11	106113640	106113840	+	1	NA	NA	NA	28838	NM_011947	26406	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.000000	0.318408	
mm_30666.1	chr4	10932583	10932783	+	1	NA	NA	NA	58185	NM_026005	67157	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	0.000000	0.547264	
mm_164302.1	chr15	103897300	103897500	-	1	NA	NA	NA	1900	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.025000	0.388060	
mm_136534.1	chr16	97610980	97611180	-	1	NA	NA	NA	115	NM_015775	50528	Mm.276145	NM_015775	ENSMUSG00000000385	Tmprss2	D16Ertd61e	transmembrane protease, serine 2	protein-coding	0.090000	0.646766	
mm_117616.1	chr13	91741773	91741973	-	1	NA	NA	NA	-1	NR_028313	373852	Mm.466817	NR_015501	ENSMUSG00000074782	4833422C13Rik	-	RIKEN cDNA 4833422C13 gene	ncRNA	0.025000	0.502488	
mm_149780.1	chr19	23135992	23136192	+	1	NA	NA	NA	-5134	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.110000	0.701493	-30(CTTTTTAAAAGG,+,0.00),-30(CTTTTTAAAAGG,-,0.00),-29(TTTTTAAAAGGG,+,0.00)
mm_58530.1	chr7	4237606	4237806	+	1	NA	NA	NA	-48	NM_001081239	232801	Mm.258061	NM_001081239	ENSMUSG00000070873	Lilra5	E030017K20|EG232801|Gm4878|Lilrc1	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 5	protein-coding	0.020000	0.467662	
mm_106965.1	chr12	8932294	8932494	+	1	NA	NA	NA	11087	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.005000	0.398010	89(CCTTTTAAACTG,+,0.00)
mm_169501.1	chr14	77735507	77735707	-	1	NA	NA	NA	63361	NM_001033440	380920	Mm.297771	NM_001033440	ENSMUSG00000075512	Gm1587	-	predicted gene 1587	protein-coding	0.010000	0.492537	
mm_16586.1	chr2	3726634	3726834	-	1	NA	NA	NA	13276	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.030000	0.457711	
mm_80964.1	chr9	103111632	103111832	+	1	NA	NA	NA	-342	NM_173781	270192	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.115000	0.761194	
mm_95876.1	chr11	58059305	58059505	+	1	NA	NA	NA	-44748	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.020000	0.407960	
mm_159638.1	chr4	141088019	141088219	+	1	NA	NA	NA	-226	NM_177867	329972	Mm.247201	NM_177867	ENSMUSG00000045004	Spata21	4933414G08	spermatogenesis associated 21	protein-coding	0.015000	0.547264	
mm_99913.1	chr11	110145499	110145699	+	1	NA	NA	NA	22554	NM_147220	217262	Mm.291459	NM_147220	ENSMUSG00000041797	Abca9	D630040K07Rik	ATP-binding cassette, sub-family A (ABC1), member 9	protein-coding	0.040000	0.472637	47(GGTTATAAATGG,-,0.00)
mm_69416.1	chr7	132589681	132589881	-	1	NA	NA	NA	9856	NM_009123	20231	Mm.334281	NM_009123	ENSMUSG00000048528	Nkx1-2	Nkx-1.1|Nkx-1.2|Sax1	NK1 transcription factor related, locus 2 (Drosophila)	protein-coding	0.020000	0.497512	
mm_60867.1	chr7	45923118	45923318	+	1	NA	NA	NA	-1792	NM_010129	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.060000	0.577114	
mm_143570.1	chr17	74295008	74295208	-	1	NA	NA	NA	-245	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.180000	0.860697	
mm_160406.1	chr8	71689199	71689399	+	1	NA	NA	NA	47	NM_013564	16336	Mm.476857	NM_013564	ENSMUSG00000079019	Insl3	Rlf|Rlnl	insulin-like 3	protein-coding	0.110000	0.736318	
mm_101094.1	chr11	11889582	11889782	-	1	NA	NA	NA	726	NM_016672	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.000000	0.328358	
mm_153937.1	chr19	47464004	47464204	-	1	NA	NA	NA	307	NM_001164717	14218	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.095000	0.671642	
mm_51596.1	chr6	84008247	84008447	+	1	NA	NA	NA	-251	NM_001077694	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.020000	0.497512	-53(CTTTTTAAAGCC,+,0.00)
mm_121563.1	chr14	122484354	122484554	+	1	NA	NA	NA	9070	NM_009574	22772	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0.040000	0.592040	
mm_19863.1	chr2	113848531	113848731	-	1	NA	NA	NA	30	NM_181416	228482	Mm.45753	NM_181416	ENSMUSG00000041219	Arhgap11a	6530401L14Rik|mKIAA0013	Rho GTPase activating protein 11A	protein-coding	0.095000	0.686567	
mm_102530.1	chr11	60935261	60935461	-	1	NA	NA	NA	3304	NM_008928	26397	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0.010000	0.547264	
mm_18951.1	chr2	76785733	76785933	-	1	NA	NA	NA	110518	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.010000	0.383085	
mm_7704.1	chr1	130448627	130448827	-	1	NA	NA	NA	14017	NM_010016	13136	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0.000000	0.452736	
mm_32603.1	chr4	112006094	112006294	+	1	NA	NA	NA	-75	NM_001102662	639781	Mm.398873	NM_001102662	ENSMUSG00000089773	Skint1	OTTMUSG00000008542|Skint-1	selection and upkeep of intraepithelial T cells 1	protein-coding	0.000000	0.383085	
mm_68519.1	chr7	111779878	111780078	-	1	NA	NA	NA	-1	NM_173739	233733	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	0.090000	0.676617	
mm_162455.1	chr1	127206504	127206704	+	1	NA	NA	NA	1618	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.045000	0.532338	
mm_16511.1	chr2	181365363	181365563	+	1	NA	NA	NA	40	NM_001048148	229007	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	0.130000	0.751244	
mm_93582.1	chr10	116925991	116926191	-	1	NA	NA	NA	24289	NM_001003950	216363	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	0.020000	0.452736	
mm_21416.1	chr2	158127083	158127283	-	1	NA	NA	NA	19209	NM_009373	21817	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.045000	0.562189	
mm_54843.1	chr6	42586737	42586937	-	1	NA	NA	NA	10535	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.373134	
mm_95099.1	chr11	34047079	34047279	+	1	NA	NA	NA	-22	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.010000	0.467662	
mm_166633.1	chr6	79096469	79096669	+	1	NA	NA	NA	64527	NR_040301	100504701	Mm.400420	NR_040301	ENSMUSG00000108072	Gm20362	-	predicted gene, 20362	ncRNA	0.010000	0.407960	
mm_88462.1	chr10	77561037	77561237	+	1	NA	NA	NA	-20630	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.015000	0.497512	
mm_39589.1	chr5	23496023	23496223	+	1	NA	NA	NA	61694	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.010000	0.402985	
mm_41258.1	chr5	88934238	88934438	+	1	NA	NA	NA	47078	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.020000	0.447761	-35(GTGTTTAAAGAG,-,0.00)
mm_95531.1	chr11	52246098	52246298	+	1	NA	NA	NA	14203	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.015000	0.442786	
mm_87107.1	chr10	33195921	33196121	+	1	NA	NA	NA	60336	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.005000	0.398010	
mm_121720.1	chr14	16574948	16575148	-	1	NA	NA	NA	428	NM_011243	218772	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	0.050000	0.542289	
mm_123059.1	chr14	55660332	55660532	-	1	NA	NA	NA	76	NM_023397	67881	Mm.24601	NM_023397	ENSMUSG00000002329	Mdp1	1810034K20Rik|AI035604	magnesium-dependent phosphatase 1	protein-coding	0.095000	0.621891	
mm_38903.1	chr4	149909632	149909832	-	1	NA	NA	NA	45274	NM_029035	74646	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	0.030000	0.537313	
mm_46208.1	chr5	98031379	98031579	-	1	NA	NA	NA	-517	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.045000	0.557214	
mm_134067.1	chr16	8637482	8637682	-	1	NA	NA	NA	119	NM_025708	66690	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	0.065000	0.487562	
mm_70322.1	chr8	4252998	4253198	+	1	NA	NA	NA	-4	NM_133968	102209	Mm.28452	NM_133968	ENSMUSG00000011837	Snapc2	0610007H10Rik|AU015675	small nuclear RNA activating complex, polypeptide 2	protein-coding	0.095000	0.671642	
mm_169990.1	chr17	15052964	15053164	+	1	NA	NA	NA	5	NM_001034891	381062	Mm.393767	NM_183133	ENSMUSG00000036552	Ermard	2210404J11Rik|2410011O22Rik|AI448938	ER membrane associated RNA degradation	protein-coding	0.000000	0.542289	
mm_135455.1	chr16	45724455	45724655	-	1	NA	NA	NA	-24	NM_019754	56370	Mm.24183	NM_019754	ENSMUSG00000022658	Tagln3	2700038H05Rik|2900005O10Rik|AI426007|Np25	transgelin 3	protein-coding	0.045000	0.587065	
mm_139390.1	chr17	52217588	52217788	+	1	NA	NA	NA	334961	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.000000	0.427861	
mm_60684.1	chr7	45154295	45154495	+	1	NA	NA	NA	92	NM_001278207	68845	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	0.125000	0.706468	
mm_78889.1	chr9	44604582	44604782	+	1	NA	NA	NA	-210	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.150000	0.791045	
mm_46134.1	chr5	92675170	92675370	-	1	NA	NA	NA	-143	NM_177230	320696	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	0.100000	0.681592	
mm_53138.1	chr6	125218888	125219088	+	1	NA	NA	NA	3407	NM_001080557	22317	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	0.020000	0.517413	
mm_60910.1	chr7	46753401	46753601	+	1	NA	NA	NA	1668	NM_011314	20209	Mm.200941	NM_011314	ENSMUSG00000057465	Saa2	AW111173|Saa-2|Saa1	serum amyloid A 2	protein-coding	0.020000	0.557214	
mm_124503.1	chr14	121879492	121879692	-	1	NA	NA	NA	-184	NR_130999	78312	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0.025000	0.432836	
mm_31518.1	chr4	54944925	54945125	+	1	NA	NA	NA	-2920	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.060000	0.616915	
mm_47292.1	chr5	122240829	122241029	-	1	NA	NA	NA	23531	NR_104441	654470	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.020000	0.527363	12(GCTTTACAAGCC,+,0.00)
mm_51068.1	chr6	66535302	66535502	+	1	NA	NA	NA	-66	NM_019499	56150	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	0.085000	0.592040	
mm_68408.1	chr7	109627923	109628123	-	1	NA	NA	NA	-10876	NM_029811	76954	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.005000	0.417910	
mm_101645.1	chr11	36498749	36498949	-	1	NA	NA	NA	445392	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.000000	0.447761	
mm_13109.1	chr2	91526865	91527065	+	1	NA	NA	NA	-19357	NM_001165989	75786	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0.155000	0.800995	
mm_159838.1	chr5	134376894	134377094	-	1	NA	NA	NA	-62234	NM_010365	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.020000	0.542289	
mm_16246.1	chr2	173158390	173158590	+	1	NA	NA	NA	5417	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.050000	0.577114	
mm_29816.1	chr3	127896204	127896404	-	1	NA	NA	NA	19	NM_027482	70617	Mm.317049	NM_027482	ENSMUSG00000050549	5730508B09Rik	2700063A17Rik|C80506	RIKEN cDNA 5730508B09 gene	protein-coding	0.120000	0.781095	
mm_7441.1	chr1	120086698	120086898	-	1	NA	NA	NA	-13018	NM_019432	170706	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0.030000	0.587065	
mm_104730.1	chr11	98326597	98326797	-	1	NA	NA	NA	2948	NM_010895	18013	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0.030000	0.447761	
mm_98200.1	chr11	87795765	87795965	+	1	NA	NA	NA	2081	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.025000	0.547264	
mm_101477.1	chr11	30954012	30954212	-	1	NA	NA	NA	19	NM_025745	66753	Mm.294641	NM_025745	ENSMUSG00000020311	Erlec1	4933407N01Rik	endoplasmic reticulum lectin 1	protein-coding	0.035000	0.676617	
mm_100107.1	chr11	115780574	115780774	+	1	NA	NA	NA	-15150	NR_049194	100885833		NR_049194	ENSMUSG00000093539	Mir5621	Gm22564|mir-5621|mmu-mir-5621	microRNA 5621	ncRNA	0.025000	0.611940	
mm_101365.1	chr11	23746640	23746840	-	1	NA	NA	NA	24230	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.000000	0.412935	
mm_7298.1	chr1	97949404	97949604	-	1	NA	NA	NA	98289	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA	0.050000	0.467662	
mm_130977.1	chr15	103340036	103340236	-	1	NA	NA	NA	-50	NM_013866	29813	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.095000	0.746269	
mm_150138.1	chr19	30963768	30963968	+	1	NA	NA	NA	-32906	NR_033643	625995	Mm.454508	NR_033643		Gm6642	EG625995	ubiquitin-like 5 pseudogene	pseudo	0.030000	0.502488	-35(CTCCTTAAAAAG,-,0.00),-33(CCTTAAAAAGGG,+,0.00)
mm_163720.1	chr13	112800749	112800949	+	1	NA	NA	NA	72	NM_008247	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.110000	0.711443	
mm_127999.1	chr15	12739828	12740028	-	1	NA	NA	NA	84729	NM_029998	77877	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	0.100000	0.716418	
mm_52646.1	chr6	117178930	117179130	+	1	NA	NA	NA	10495	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.020000	0.557214	
mm_136291.1	chr16	91425037	91425237	-	1	NA	NA	NA	18902	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.020000	0.492537	
mm_141101.1	chr17	26019640	26019840	-	1	NA	NA	NA	2120	NM_153140	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.005000	0.402985	
mm_158334.1	chrX	133981613	133981813	-	1	NA	NA	NA	99	NM_001290718	27359	Mm.38674	NM_013757	ENSMUSG00000031255	Sytl4	Gph|Slp4	synaptotagmin-like 4	protein-coding	0.030000	0.577114	
mm_26891.1	chr3	19043477	19043677	-	1	NA	NA	NA	119488	NM_028840	74252	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0.000000	0.268657	-85(CCTTTAAAACAT,+,0.00)
mm_12100.1	chr2	61530478	61530678	+	1	NA	NA	NA	-48008	NM_011529	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.005000	0.427861	
mm_66232.1	chr7	35178191	35178391	-	1	NA	NA	NA	-8094	NM_017394	53896	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0.010000	0.547264	
mm_168565.1	chr11	69662638	69662838	-	1	NA	NA	NA	-89	NM_011900	24070	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	0.085000	0.606965	-37(GCTTTAAAATTC,+,0.00)
mm_131586.1	chr16	18498804	18499004	+	1	NA	NA	NA	33	NR_104347	13972	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|OTTMUSG00000033458|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	0.125000	0.721393	
mm_141465.1	chr17	30593437	30593637	-	1	NA	NA	NA	-17250	NM_027060	224671	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0.010000	0.348259	
mm_100695.1	chr11	3529928	3530128	-	1	NA	NA	NA	9264	NM_013870	29856	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.015000	0.636816	
mm_152369.1	chr19	10121872	10122072	-	1	NA	NA	NA	-20469	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	0.010000	0.427861	-34(TCATATAAAAAG,-,0.00)
mm_40901.1	chr5	75179998	75180198	+	1	NA	NA	NA	3267	NR_105992	102465620		NR_105992	ENSMUSG00000099060	Mir7025	Gm27860|mmu-mir-7025	microRNA 7025	ncRNA	0.030000	0.542289	
mm_139551.1	chr17	56831578	56831778	+	1	NA	NA	NA	-670	NM_027787	19725	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0.030000	0.487562	
mm_159283.1	chr2	168741985	168742185	-	1	NA	NA	NA	51	NM_001289446	11981	Mm.330819	NM_015731	ENSMUSG00000027546	Atp9a	IIa	ATPase, class II, type 9A	protein-coding	0.190000	0.820896	
mm_168264.1	chr10	91225011	91225211	+	1	NA	NA	NA	-53492	NM_001080130	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.005000	0.472637	-27(GCTTTAATACCC,+,0.00)
mm_117691.1	chr13	94285907	94286107	-	1	NA	NA	NA	-176	NM_001346609	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.030000	0.467662	
mm_148585.1	chr19	5050733	5050933	+	1	NA	NA	NA	25	NM_145495	225870	Mm.271922	NM_145495	ENSMUSG00000024883	Rin1	-	Ras and Rab interactor 1	protein-coding	0.035000	0.606965	
mm_50800.1	chr6	54269048	54269248	+	1	NA	NA	NA	-8	NM_001311134	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.005000	0.457711	
mm_119776.1	chr14	54176178	54176378	+	1	NA	NA	NA	77651	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.452736	
mm_59458.1	chr7	27195807	27196007	+	1	NA	NA	NA	126	NM_001243888	414069	Mm.379069	NM_001243888	ENSMUSG00000078786	BC024978	-	cDNA sequence BC024978	protein-coding	0.095000	0.631841	
mm_103958.1	chr11	84129501	84129701	-	1	NA	NA	NA	-33	NM_172562	217031	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	0.190000	0.796020	
mm_4547.1	chr1	177258418	177258618	+	1	NA	NA	NA	-9751	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.100000	0.691542	
mm_14145.1	chr2	126552663	126552863	+	1	NA	NA	NA	-261	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0.045000	0.492537	-34(GCGTTTATAAGG,-,0.00)
mm_12153.1	chr2	61812852	61813052	+	1	NA	NA	NA	8499	NM_009322	21375	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.020000	0.398010	
mm_45868.1	chr5	88007978	88008178	-	1	NA	NA	NA	5553	NM_011422	20599	Mm.261199	NM_011422	ENSMUSG00000029280	Smr3a	AA589601|MSG1|MSG3|Smr1|Smr3	submaxillary gland androgen regulated protein 3A	protein-coding	0.005000	0.487562	
mm_121538.1	chr14	122383972	122384172	+	1	NA	NA	NA	67043	NR_033325	328479	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.025000	0.512438	-96(GCTTTTCTACGC,+,0.00)
mm_51225.1	chr6	71373278	71373478	+	1	NA	NA	NA	-49	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.015000	0.532338	-33(GCCCCTAAAAGG,-,0.00)
mm_66090.1	chr7	30973274	30973474	-	1	NA	NA	NA	95	NM_001164185	54135	Mm.4067	NM_017405	ENSMUSG00000001247	Lsr	ILDR3|Lisch7	lipolysis stimulated lipoprotein receptor	protein-coding	0.065000	0.616915	
mm_128089.1	chr15	27785282	27785482	-	1	NA	NA	NA	-103840	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.015000	0.517413	
mm_3137.1	chr1	135132617	135132817	+	1	NA	NA	NA	-8	NM_177081	320139	Mm.258388	NM_177081	ENSMUSG00000031506	Ptpn7	BPTP-4|C920001D21Rik|HEPTP|LC-PTP|LPTP	protein tyrosine phosphatase, non-receptor type 7	protein-coding	0.020000	0.577114	
mm_12018.1	chr2	58153909	58154109	+	1	NA	NA	NA	6113	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.015000	0.437811	
mm_169270.1	chr13	86046665	86046865	-	1	NA	NA	NA	30	NM_007749	12867	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	0.070000	0.562189	
mm_113393.1	chr13	33040906	33041106	+	1	NA	NA	NA	13592	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	0.005000	0.328358	
mm_170558.1	chr19	43351105	43351305	+	1	NA	NA	NA	37150	NM_001081257	545291	Mm.442200	NM_001081257	ENSMUSG00000074852	Hpse2	Gm968|Hpa2	heparanase 2	protein-coding	0.020000	0.497512	
mm_11959.1	chr2	53107510	53107710	+	1	NA	NA	NA	83577	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.010000	0.552239	
mm_167114.1	chr7	118129496	118129696	-	1	NA	NA	NA	29	NM_019419	54208	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0.095000	0.621891	-12(GCCTATATAAGC,-,0.00)
mm_162206.1	chrX	135839005	135839205	+	1	NA	NA	NA	71	NM_001163017	245607	Mm.489763	NM_001163015	ENSMUSG00000072966	Gprasp2	5330440H13Rik|GASP-2|GASP2|Prpl5	G protein-coupled receptor associated sorting protein 2	protein-coding	0.070000	0.641791	
mm_18098.1	chr2	44987657	44987857	-	1	NA	NA	NA	35420	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.020000	0.412935	
mm_171801.1	chr5	123826340	123826540	-	1	NA	NA	NA	39076	NM_030701	80885	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0.005000	0.497512	
mm_90970.1	chr10	13446021	13446221	-	1	NA	NA	NA	28275	NM_001195065	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.005000	0.462687	
mm_5668.1	chr1	42695185	42695385	-	1	NA	NA	NA	-460	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.055000	0.522388	
mm_104242.1	chr11	88718203	88718403	-	1	NA	NA	NA	-36	NM_001201341	76626	Mm.400451	NM_054043	ENSMUSG00000069769	Msi2	1700105C15Rik|AI451722|AI563628|AW489193|Msi2h	musashi RNA-binding protein 2	protein-coding	0.115000	0.791045	
mm_90993.1	chr10	13966684	13966884	-	1	NA	NA	NA	405	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.080000	0.646766	
mm_45227.1	chr5	53505414	53505614	-	1	NA	NA	NA	-50265	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.005000	0.502488	
mm_111301.1	chr12	85599112	85599312	-	1	NA	NA	NA	107	NM_001205052	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.130000	0.761194	
mm_80459.1	chr9	77983432	77983632	+	1	NA	NA	NA	66167	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.010000	0.407960	-28(GTGTTTAAAGAG,-,0.00)
mm_121529.1	chr14	122228258	122228458	+	1	NA	NA	NA	5280	NR_015532	68245	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.000000	0.223881	
mm_14993.1	chr2	152293891	152294091	+	1	NA	NA	NA	119	NM_024196	67231	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	0.125000	0.781095	
mm_88604.1	chr10	79807170	79807370	+	1	NA	NA	NA	13698	NM_001161747	18483	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0.020000	0.616915	
mm_133467.1	chr16	89211378	89211578	+	1	NA	NA	NA	5617	NM_001163615	622935	Mm.459837	NM_001163615	ENSMUSG00000091039	Krtap20-2	1190004K03Rik|EG622935|Gm6371	keratin associated protein 20-2	protein-coding	0.005000	0.442786	-32(GTATATAAAAGA,-,0.00)
mm_112916.1	chr13	20923052	20923252	+	1	NA	NA	NA	129039	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.412935	
mm_124084.1	chr14	78713557	78713757	-	1	NA	NA	NA	11432	NM_001081336	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.015000	0.368159	68(GCCTATAAGTGC,-,0.00)
mm_172145.1	chr6	37686778	37686978	-	1	NA	NA	NA	156705	NM_145364	208665	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0.025000	0.487562	
mm_84956.1	chr9	83434511	83434711	-	1	NA	NA	NA	3064	NR_102437	100039186	Mm.212721	NR_102437	ENSMUSG00000099718	Gm2087	-	predicted gene 2087	ncRNA	0.020000	0.517413	
mm_74908.1	chr8	25238100	25238300	-	1	NA	NA	NA	-36658	NM_177089	320165	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.020000	0.388060	
mm_11888.1	chr2	49721741	49721941	+	1	NA	NA	NA	-65845	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.020000	0.467662	
mm_117293.1	chr13	66932885	66933085	-	1	NA	NA	NA	87	NM_025547	66410	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	0.135000	0.676617	
mm_10191.1	chr2	4918921	4919121	+	1	NA	NA	NA	25	NM_010726	16922	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.060000	0.661692	
mm_72610.1	chr8	84597780	84597980	+	1	NA	NA	NA	64972	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.015000	0.477612	
mm_22635.1	chr3	14862748	14862948	+	1	NA	NA	NA	-690	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.020000	0.527363	
mm_90938.1	chr10	12922978	12923178	-	1	NA	NA	NA	49	NR_038027	320273	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	0.075000	0.621891	
mm_92273.1	chr10	71159749	71159949	-	1	NA	NA	NA	-159	NM_001347189	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	BicC family RNA binding protein 1	protein-coding	0.185000	0.845771	
mm_25091.1	chr3	100921597	100921797	+	1	NA	NA	NA	-796	NM_001165952	229644	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	0.015000	0.512438	
mm_70803.1	chr8	22939250	22939450	+	1	NA	NA	NA	-35486	NM_001110783	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.025000	0.522388	
mm_88400.1	chr10	76583796	76583996	+	1	NA	NA	NA	8248	NM_080845	14317	Mm.36278	NM_080845	ENSMUSG00000001155	Ftcd	-	formiminotransferase cyclodeaminase	protein-coding	0.045000	0.557214	
mm_63551.1	chr7	128070568	128070768	+	1	NA	NA	NA	8028	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.005000	0.552239	
mm_74378.1	chr8	128685664	128685864	+	1	NA	NA	NA	110	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.145000	0.756219	
mm_111766.1	chr12	104013549	104013749	-	1	NA	NA	NA	3	NM_027997	71907	Mm.326723	NM_027997	ENSMUSG00000058260	Serpina9	2310014L03Rik|AW049635|Centerin	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9	protein-coding	0.010000	0.537313	-75(CCCCATTAAGGG,-,0.00)
mm_126414.1	chr15	80287143	80287343	+	1	NA	NA	NA	5	NM_001044308	239556	Mm.291058	NM_001044308	ENSMUSG00000022416	Cacna1i	Ca(V)3.3	calcium channel, voltage-dependent, alpha 1I subunit	protein-coding	0.135000	0.711443	
mm_1156.1	chr1	60887274	60887474	+	1	NA	NA	NA	-21651	NM_009843	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.010000	0.457711	
mm_70159.1	chr7	143548716	143548916	-	1	NA	NA	NA	12	NM_001285490	17955	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	0.125000	0.741294	
mm_136125.1	chr16	85900632	85900832	-	1	NA	NA	NA	393	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0.070000	0.567164	
mm_47489.1	chr5	123910415	123910615	-	1	NA	NA	NA	3240	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.010000	0.537313	
mm_136320.1	chr16	91931549	91931749	-	1	NA	NA	NA	-19	NM_138597	28080	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.105000	0.616915	
mm_65495.1	chr7	25712464	25712664	-	1	NA	NA	NA	6489	NM_028771	52132	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.020000	0.587065	
mm_134441.1	chr16	18248552	18248752	-	1	NA	NA	NA	42	NM_011239	19385	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	0.140000	0.736318	
mm_55913.1	chr6	83775490	83775690	-	1	NA	NA	NA	222	NM_009357	21766	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	0.095000	0.666667	
mm_35760.1	chr4	45826854	45827054	-	1	NA	NA	NA	-127	NM_018741	75426	Mm.3919	NM_018741	ENSMUSG00000035551	Igfbpl1	2810011G06Rik|2810453O06Rik|IGFBPL	insulin-like growth factor binding protein-like 1	protein-coding	0.105000	0.681592	-98(CATTTTAAGGCC,+,0.00)
mm_131014.1	chr15	103563196	103563396	-	1	NA	NA	NA	1785	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.005000	0.512438	
mm_15387.1	chr2	156613585	156613785	+	1	NA	NA	NA	-12	NM_146128	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.165000	0.845771	
mm_64080.1	chr7	140941821	140942021	+	1	NA	NA	NA	340	NM_145387	212974	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0.055000	0.631841	
mm_162694.1	chr10	19939387	19939587	+	1	NA	NA	NA	4961	NM_008580	26408	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.030000	0.537313	
mm_23503.1	chr3	60528382	60528582	+	1	NA	NA	NA	27303	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.010000	0.442786	
mm_129886.1	chr15	83489513	83489713	-	1	NA	NA	NA	21294	NM_178869	319953	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0.080000	0.567164	
mm_64799.1	chr7	6689402	6689602	-	1	NA	NA	NA	6930	NM_011769	22776	Mm.89976	NM_011769	ENSMUSG00000002266	Zim1	-	zinc finger, imprinted 1	protein-coding	0.010000	0.472637	
mm_2007.1	chr1	87127314	87127514	+	1	NA	NA	NA	2406	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.040000	0.601990	
mm_110675.1	chr12	65213410	65213610	-	1	NA	NA	NA	-12007	NM_027614	70948	Mm.219475	NM_027614	ENSMUSG00000035560	Wdr20rt	4921538B03Rik|4930427E19Rik|Wdr20|Wdr20b	WD repeat domain 20, retrogene	protein-coding	0.015000	0.447761	
mm_97584.1	chr11	78945545	78945745	+	1	NA	NA	NA	20354	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.020000	0.547264	
mm_168020.1	chrY	90737738	90737938	+	1	NA	NA	NA	17212	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.437811	
mm_91989.1	chr10	61979025	61979225	-	1	NA	NA	NA	-17	NM_007731	12817	Mm.300931	NM_007731	ENSMUSG00000058806	Col13a1	-	collagen, type XIII, alpha 1	protein-coding	0.105000	0.716418	
mm_81609.1	chr9	110689353	110689553	+	1	NA	NA	NA	32950	NM_028312	72654	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.025000	0.587065	
mm_53350.1	chr6	129350190	129350390	+	1	NA	NA	NA	46	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.005000	0.398010	
mm_35055.1	chr4	6355346	6355546	-	1	NA	NA	NA	-10234	NM_016807	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.005000	0.417910	-75(TTCTCTAAAAAG,-,0.00)
mm_138292.1	chr17	34629330	34629530	+	1	NA	NA	NA	-256	NM_030890	260297	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31	proline-rich transmembrane protein 1	protein-coding	0.025000	0.597015	73(GTCCCTTTAAGC,-,0.00),75(CCCTTTAAGCTC,+,0.00)
mm_107658.1	chr12	52790643	52790843	+	1	NA	NA	NA	91360	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.005000	0.497512	33(GCATTTATAGTG,+,0.00)
mm_143079.1	chr17	57044444	57044644	-	1	NA	NA	NA	-2890	NM_175333	103775	Mm.33647	NM_175333	ENSMUSG00000011486	Slc25a41	4933406J04Rik|AI507137	solute carrier family 25, member 41	protein-coding	0.000000	0.497512	
mm_54964.1	chr6	48718576	48718776	-	1	NA	NA	NA	55	NM_146167	231932	Mm.30479	NM_146167	ENSMUSG00000043931	Gimap7	IAN7|Ian3	GTPase, IMAP family member 7	protein-coding	0.010000	0.557214	
mm_21325.1	chr2	157101150	157101350	-	1	NA	NA	NA	14195	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.015000	0.452736	
mm_134027.1	chr16	5009998	5010198	-	1	NA	NA	NA	2782	NR_045596	432995	Mm.271618	NM_001253796	ENSMUSG00000096215	Smim22	EG432995|Gm5480	small integral membrane protein 22	protein-coding	0.015000	0.567164	
mm_10175.1	chr2	4559837	4560037	+	1	NA	NA	NA	183	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.020000	0.522388	
mm_133530.1	chr16	91011187	91011387	+	1	NA	NA	NA	21	NM_001164483	104015	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.120000	0.741294	
mm_32477.1	chr4	107830863	107831063	+	1	NA	NA	NA	28704	NM_001080926	16975	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0.015000	0.562189	
mm_140121.1	chr17	79052149	79052349	+	1	NA	NA	NA	343	NM_001316729	70536	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	0.080000	0.656716	
mm_163567.1	chr13	28901760	28901960	+	1	NA	NA	NA	-16438	NR_045053	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.010000	0.457711	
mm_147987.1	chr18	67610737	67610937	-	1	NA	NA	NA	30499	NM_001081073	225659	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0.210000	0.825871	
mm_2680.1	chr1	127306205	127306405	+	1	NA	NA	NA	101319	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.035000	0.517413	
mm_31664.1	chr4	59964094	59964294	+	1	NA	NA	NA	-3529	NM_008648	17843	Mm.457982	NM_008648	ENSMUSG00000041333	Mup4	Mup-4|Mup1	major urinary protein 4	protein-coding	0.005000	0.442786	
mm_139350.1	chr17	50508987	50509187	+	1	NA	NA	NA	-460	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.170000	0.810945	
mm_39256.1	chr5	3526976	3527176	+	1	NA	NA	NA	-16757	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.005000	0.383085	
mm_116567.1	chr13	47014739	47014939	-	1	NA	NA	NA	11	NM_175340	105193	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	0.130000	0.726368	
mm_127144.1	chr15	98481429	98481629	+	1	NA	NA	NA	1154	NM_010679	16770	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0.025000	0.447761	
mm_17224.1	chr2	25501651	25501851	-	1	NA	NA	NA	-32	NM_001271777	69379	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	0.015000	0.562189	
mm_171327.1	chr3	96488625	96488825	+	1	NA	NA	NA	-36419	NM_001256180	329716	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	0.080000	0.636816	
mm_97238.1	chr11	75656040	75656240	+	1	NA	NA	NA	125	NM_001080775	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.105000	0.741294	
mm_122767.1	chr14	54259047	54259247	-	1	NA	NA	NA	-85	NM_134076	105501	Mm.28771	NM_134076	ENSMUSG00000040997	Abhd4	1110035H23Rik|AI429574|Abh4	abhydrolase domain containing 4	protein-coding	0.055000	0.611940	
mm_130000.1	chr15	86186234	86186434	-	1	NA	NA	NA	-193	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.015000	0.552239	
mm_31313.1	chr4	46106254	46106454	+	1	NA	NA	NA	32121	NM_173033	272027	Mm.331588	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	0.000000	0.323383	-65(CCTTTAATGGCA,+,0.00)
mm_48860.1	chr5	149802461	149802661	-	1	NA	NA	NA	9190	NR_077242	100861794	Mm.402054	NR_077242	ENSMUSG00000106740	Gm21221	-	predicted gene, 21221	ncRNA	0.015000	0.502488	
mm_17918.1	chr2	35432731	35432931	-	1	NA	NA	NA	28618	NM_001308299	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.010000	0.552239	
mm_50799.1	chr6	54267090	54267290	+	1	NA	NA	NA	-1966	NM_001311134	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.005000	0.482587	-91(GCTCATAAAGCC,+,0.00)
mm_77472.1	chr8	122432351	122432551	-	1	NA	NA	NA	489	NM_001301284	13057	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.050000	0.601990	
mm_155679.1	chrX	93094307	93094507	+	1	NA	NA	NA	-61747	NR_105038	69357	Mm.443312	NM_183280	ENSMUSG00000096153	BC061195	-	cDNA sequence BC061195	pseudo	0.020000	0.477612	
mm_6278.1	chr1	69683068	69683268	-	1	NA	NA	NA	2792	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.015000	0.437811	
mm_88752.1	chr10	80299072	80299272	+	1	NA	NA	NA	-2648	NM_011789	23805	Mm.57247	NM_011789	ENSMUSG00000020135	Apc2	AI852447|APCL|R75424	adenomatosis polyposis coli 2	protein-coding	0.055000	0.676617	
mm_47597.1	chr5	124862375	124862575	-	1	NA	NA	NA	-230	NM_001081750	269704	Mm.138617	NM_001081750	ENSMUSG00000079215	Zfp664	AW060232|D930038J03Rik|ZFOC1|Znf664	zinc finger protein 664	protein-coding	0.080000	0.606965	
mm_164509.1	chr16	94027536	94027736	+	1	NA	NA	NA	-18799	NM_019500	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.000000	0.492537	
mm_35606.1	chr4	43046068	43046268	-	1	NA	NA	NA	52	NR_045567	230088	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0.075000	0.671642	
mm_93180.1	chr10	93594022	93594222	-	1	NA	NA	NA	-4464	NM_027246	69878	Mm.259642	NM_027246	ENSMUSG00000020018	Snrpf	2010013O18Rik|SMF|sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding	0.060000	0.532338	
mm_42478.1	chr5	115468352	115468552	+	1	NA	NA	NA	2186	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.005000	0.437811	29(GCTTATCTAGAG,+,0.00)
mm_162597.1	chr1	183147376	183147576	-	1	NA	NA	NA	81	NM_001278220	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0.010000	0.562189	81(TTCTTTTAAAGG,-,0.00),82(TCTTTTAAAGGA,+,0.00)
mm_27998.1	chr3	82876418	82876618	-	1	NA	NA	NA	-35	NM_001146328	633285	Mm.265114	NM_001146328	ENSMUSG00000033882	Rbm46	EG633285|ENSMUSG00000033882|Gm761	RNA binding motif protein 46	protein-coding	0.115000	0.736318	
mm_157918.1	chrX	78583690	78583890	-	1	NA	NA	NA	15	NM_001164275	546336	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	0.075000	0.636816	
mm_141832.1	chr17	34628113	34628313	-	1	NA	NA	NA	66	NM_001302393	54397	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	0.070000	0.636816	
mm_162129.1	chrX	73116989	73117189	+	1	NA	NA	NA	42	NM_001025384	574405	Mm.336093	NM_001025384	ENSMUSG00000071745	DXBay18	-	DNA segment, Chr X, Baylor 18	protein-coding	0.020000	0.537313	
mm_63027.1	chr7	121036570	121036770	+	1	NA	NA	NA	2225	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.015000	0.462687	
mm_86448.1	chr10	4268380	4268580	+	1	NA	NA	NA	2151	NM_031185	83397	Mm.27481	NM_031185	ENSMUSG00000038587	Akap12	AI317366|SSeCKS|Srcs5|Tsga12	A kinase (PRKA) anchor protein (gravin) 12	protein-coding	0.020000	0.378109	
mm_11063.1	chr2	27540341	27540541	+	1	NA	NA	NA	25294	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.090000	0.582090	
mm_66752.1	chr7	46712523	46712723	-	1	NA	NA	NA	-1972	NM_030233	78935	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.025000	0.537313	
mm_146644.1	chr18	10787592	10787792	-	1	NA	NA	NA	-2140	NR_029781	723959		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	0.015000	0.517413	-34(GCCTATAAAGCT,+,0.00)
mm_49950.1	chr6	40359823	40360023	+	1	NA	NA	NA	34445	NM_023538	69923	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding	0.000000	0.288557	-76(TACTATAAAAGC,-,0.00)
mm_172381.1	chr7	130834454	130834654	+	1	NA	NA	NA	-31170	NM_001346515	101476	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.060000	0.557214	
mm_143516.1	chr17	73074638	73074838	-	1	NA	NA	NA	-33247	NM_001177968	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.005000	0.482587	
mm_114688.1	chr13	81754111	81754311	+	1	NA	NA	NA	-29081	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.015000	0.462687	
mm_25176.1	chr3	103171648	103171848	+	1	NA	NA	NA	37	NM_026602	68183	Mm.104919	NM_026602	ENSMUSG00000005687	Bcas2	6430539P16Rik|AI132645|C76366|C80030	breast carcinoma amplified sequence 2	protein-coding	0.095000	0.616915	
mm_18977.1	chr2	76848803	76849003	-	1	NA	NA	NA	133644	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.015000	0.447761	-13(GTCCATAAAGAG,-,0.00)
mm_36080.1	chr4	58206467	58206667	-	1	NA	NA	NA	29	NM_022814	64817	Mm.261024	NM_022814	ENSMUSG00000028369	Svep1	1110021D17Rik|4833413O10Rik|AA387071|D430029O09Rik|Polydom	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	protein-coding	0.045000	0.582090	-74(CATTTTATAGGC,+,0.00)
mm_62947.1	chr7	119561613	119561813	+	1	NA	NA	NA	5	NM_001177978	233799	Mm.268448	NM_146197	ENSMUSG00000030945	Acsm2	AI315615|BC031140	acyl-CoA synthetase medium-chain family member 2	protein-coding	0.015000	0.462687	
mm_119707.1	chr14	53806368	53806568	+	1	NA	NA	NA	447461	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.437811	-37(ATGTCTATAAGG,-,0.00),12(GCCTTTATACCT,+,0.00)
mm_15671.1	chr2	163438443	163438643	+	1	NA	NA	NA	76	NM_144891	228858	Mm.102080	NM_144891	ENSMUSG00000017943	Gdap1l1	Gdap1l	ganglioside-induced differentiation-associated protein 1-like 1	protein-coding	0.075000	0.686567	
mm_131659.1	chr16	20590060	20590260	+	1	NA	NA	NA	578	NM_001144953	328643	Mm.40539	NM_182636	ENSMUSG00000046613	Vwa5b2	BB182430|EG328644|Gm1738|Gm931	von Willebrand factor A domain containing 5B2	protein-coding	0.075000	0.681592	
mm_61182.1	chr7	62348205	62348405	+	1	NA	NA	NA	28	NM_010882	17984	Mm.400253	NM_010882	ENSMUSG00000033585	Ndn	AI528698|Peg6	necdin	protein-coding	0.080000	0.636816	
mm_132137.1	chr16	31933844	31934044	+	1	NA	NA	NA	93	NM_172822	239827	Mm.440388	NM_172822	ENSMUSG00000045625	Pigz	F630022B06Rik	phosphatidylinositol glycan anchor biosynthesis, class Z	protein-coding	0.090000	0.686567	
mm_170429.1	chr18	7515678	7515878	-	1	NA	NA	NA	111085	NM_001081287	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0.025000	0.467662	
mm_98260.1	chr11	88864689	88864889	+	1	NA	NA	NA	-203	NM_001042541	11640	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	0.080000	0.651741	
mm_166802.1	chr7	4129201	4129401	+	1	NA	NA	NA	7625	NR_033548	100037396	Mm.447887	NR_033548	ENSMUSG00000085886	D030047H15Rik	Gm15924|OTTMUSG00000027889	RIKEN cDNA D030047H15 gene	ncRNA	0.005000	0.552239	
mm_84089.1	chr9	58221002	58221202	-	1	NA	NA	NA	-48	NR_105806	102466639		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	0.005000	0.437811	
mm_114978.1	chr13	97245881	97246081	+	1	NA	NA	NA	4876	NM_007930	13803	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.025000	0.492537	
mm_49504.1	chr6	29792035	29792235	+	1	NA	NA	NA	23692	NM_001171000	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.005000	0.308458	
mm_112443.1	chr13	5861398	5861598	+	1	NA	NA	NA	9	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.070000	0.661692	
mm_135907.1	chr16	67518167	67518367	-	1	NA	NA	NA	102641	NM_001347247	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.005000	0.298507	
mm_150949.1	chr19	46328092	46328292	+	1	NA	NA	NA	8	NM_133694	68431	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	0.050000	0.597015	
mm_141653.1	chr17	33685318	33685518	-	1	NA	NA	NA	40	NM_001109913	76936	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	0.120000	0.671642	
mm_32361.1	chr4	105170441	105170641	+	1	NA	NA	NA	13194	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.010000	0.353234	
mm_126236.1	chr15	78982984	78983184	+	1	NA	NA	NA	28	NM_001024716	110253	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.090000	0.646766	
mm_153639.1	chr19	44107334	44107534	-	1	NA	NA	NA	43	NM_007700	12675	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	0.140000	0.756219	
mm_141897.1	chr17	34881942	34882142	-	1	NA	NA	NA	58	NM_013484	12263	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	0.045000	0.606965	
mm_16882.1	chr2	13010809	13011009	-	1	NA	NA	NA	-45	NM_153155	227580	Mm.229322	NM_153155	ENSMUSG00000049630	C1ql3	1110065A22Rik|AI661623|C1ql|C1qtnf13|CTRP13|K100	C1q-like 3	protein-coding	0.070000	0.631841	
mm_46189.1	chr5	97929724	97929924	-	1	NA	NA	NA	101138	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.000000	0.348259	
mm_105115.1	chr11	101062768	101062968	-	1	NA	NA	NA	-7226	NM_013792	27419	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.005000	0.542289	
mm_19722.1	chr2	104433548	104433748	-	1	NA	NA	NA	-4708	NR_035432	100316678		NR_035432	ENSMUSG00000084516	Mir1902	Mirn1902|mmu-mir-1902	microRNA 1902	ncRNA	0.045000	0.532338	
mm_47643.1	chr5	125389060	125389260	-	1	NA	NA	NA	857	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.060000	0.537313	
mm_151364.1	chr19	55919410	55919610	+	1	NA	NA	NA	24189	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.035000	0.552239	
mm_13415.1	chr2	104122656	104122856	+	1	NA	NA	NA	-13	NM_026634	68243	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0.105000	0.701493	
mm_23622.1	chr3	65957413	65957613	+	1	NA	NA	NA	712	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.075000	0.582090	
mm_29753.1	chr3	127124767	127124967	-	1	NA	NA	NA	-36438	NR_105030	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.025000	0.562189	
mm_69850.1	chr7	141427330	141427530	-	1	NA	NA	NA	1990	NM_021316	57754	Mm.87027	NM_021316	ENSMUSG00000060240	Cend1	1500001H12Rik|AI415214|BM88	cell cycle exit and neuronal differentiation 1	protein-coding	0.015000	0.477612	-49(GCCTTTCTAGCC,+,0.00)
mm_22463.1	chr3	3512859	3513059	+	1	NA	NA	NA	4929	NM_013920	30942	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.005000	0.422886	
mm_4502.1	chr1	173729015	173729215	+	1	NA	NA	NA	12694	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.000000	0.477612	
mm_138000.1	chr17	33760970	33761170	+	1	NA	NA	NA	-584	NM_008997	19326	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0.005000	0.422886	
mm_14004.1	chr2	122028034	122028234	+	1	NA	NA	NA	-446	NM_144545	78655	Mm.458184	NM_144545	ENSMUSG00000027236	Eif3j1	1810016I04Rik|2700079K05Rik|AA409117|AA409446|C78575|Eif3j|Eif3j-1|Eif3j-2|Eif3j2|Eif3s1|eIF-3-alpha-A|eIF-3-alpha-B|eIF3-alpha|eIF3-p35|eIF3j-A|eIF3j-B	eukaryotic translation initiation factor 3, subunit J1	protein-coding	0.040000	0.452736	
mm_140936.1	chr17	24440297	24440497	-	1	NA	NA	NA	2704	NM_025718	66705	Mm.29017	NM_025718	ENSMUSG00000024136	Dnase1l2	4733401H14Rik	deoxyribonuclease 1-like 2	protein-coding	0.030000	0.562189	
mm_73012.1	chr8	93963173	93963373	+	1	NA	NA	NA	49367	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.005000	0.557214	
mm_67359.1	chr7	79838207	79838407	-	1	NA	NA	NA	4045	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.015000	0.532338	
mm_20719.1	chr2	135215516	135215716	-	1	NA	NA	NA	0	NR_040517	78805	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA	0.000000	0.412935	
mm_79221.1	chr9	49518222	49518422	+	1	NA	NA	NA	34	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.025000	0.512438	
mm_19151.1	chr2	80581025	80581225	-	1	NA	NA	NA	57	NM_001290745	50884	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0.160000	0.800995	
mm_2655.1	chr1	125677018	125677218	+	1	NA	NA	NA	122	NM_027677	71111	Mm.32727	NM_027677	ENSMUSG00000026343	Gpr39	4933415E13Rik	G protein-coupled receptor 39	protein-coding	0.045000	0.572139	
mm_159233.1	chr2	137116215	137116415	-	1	NA	NA	NA	205	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.165000	0.736318	
mm_165413.1	chr2	145707171	145707371	+	1	NA	NA	NA	6076	NR_033220	408057	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.005000	0.527363	
mm_170016.1	chr17	18476671	18476871	-	1	NA	NA	NA	52667	NM_001102581	328759	Mm.469839	NM_001102581	ENSMUSG00000091631	Vmn2r95	-	vomeronasal 2, receptor 95	protein-coding	0.010000	0.507463	
mm_144840.1	chr18	36560501	36560701	+	1	NA	NA	NA	-2	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.080000	0.641791	
mm_85447.1	chr9	104262866	104263066	-	1	NA	NA	NA	-36	NM_001163026	235567	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.125000	0.721393	
mm_153691.1	chr19	44397072	44397272	-	1	NA	NA	NA	10537	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.447761	
mm_17860.1	chr2	34807576	34807776	-	1	NA	NA	NA	-7764	NM_145522	227746	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.000000	0.258706	
mm_12636.1	chr2	74705654	74705854	+	1	NA	NA	NA	265	NM_008276	15437	Mm.280673	NM_008276	ENSMUSG00000027102	Hoxd8	4921540P06Rik|AI047735|Hox-4.3|Hox-5.4	homeobox D8	protein-coding	0.160000	0.776119	
mm_82183.1	chr9	123935623	123935823	+	1	NA	NA	NA	32969	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.015000	0.452736	2(CAGTTTTAAAGC,-,0.00)
mm_62468.1	chr7	101763421	101763621	+	1	NA	NA	NA	-54792	NM_008887	11859	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	0.025000	0.567164	
mm_141136.1	chr17	26244048	26244248	-	1	NA	NA	NA	94	NM_207217	106581	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0.090000	0.731343	
mm_104476.1	chr11	95514601	95514801	-	1	NA	NA	NA	-136	NM_130858	104079	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	0.155000	0.805970	
mm_5290.1	chr1	20869827	20870027	-	1	NA	NA	NA	20546	NR_040492	77741	Mm.159984	NR_040492	ENSMUSG00000097934	6720483E21Rik	-	RIKEN cDNA 6720483E21 gene	ncRNA	0.005000	0.437811	
mm_154403.1	chrM	14046	14246	+	1	NA	NA	NA	NA	NA									0.015000	0.318408	
mm_89153.1	chr10	86032869	86033069	+	1	NA	NA	NA	10815	NM_001347151	69754	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	0.000000	0.373134	59(GTCTTTAAAAGG,-,0.00),60(TCTTTAAAAGGT,+,0.00)
mm_113410.1	chr13	33967005	33967205	+	1	NA	NA	NA	-48	NM_001163242	18105	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	NAD(P)H dehydrogenase, quinone 2	protein-coding	0.010000	0.522388	-32(GCTTTAAGACCC,+,0.00)
mm_125468.1	chr15	53621554	53621754	+	1	NA	NA	NA	-275471	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.010000	0.502488	
mm_137884.1	chr17	31594731	31594931	+	1	NA	NA	NA	30058	NM_016670	18771	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.025000	0.512438	
mm_79873.1	chr9	65141337	65141537	+	1	NA	NA	NA	248	NM_008988	19289	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0.155000	0.761194	
mm_105746.1	chr11	109425665	109425865	-	1	NA	NA	NA	-181	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.065000	0.601990	
mm_169327.1	chr14	116901752	116901952	+	1	NA	NA	NA	-23445	NM_001079844	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.035000	0.502488	
mm_151986.1	chr19	5845711	5845911	-	1	NA	NA	NA	-331	NR_003513	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.060000	0.567164	
mm_162378.1	chr1	72284176	72284376	-	1	NA	NA	NA	38	NM_023523	111175	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding	0.060000	0.601990	
mm_126970.1	chr15	93397905	93398105	+	1	NA	NA	NA	285	NM_026025	67197	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	0.080000	0.646766	
mm_169509.1	chr14	8286608	8286808	+	1	NA	NA	NA	23068	NM_183187	268709	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0.010000	0.333333	8(CCATTTAAAAGC,+,0.00),8(CCATTTAAAAGC,-,0.00)
mm_83525.1	chr9	46229987	46230187	-	1	NA	NA	NA	1457	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.075000	0.621891	
mm_129566.1	chr15	79605000	79605200	-	1	NA	NA	NA	9	NR_103477	13404	Mm.2524	NM_010059	ENSMUSG00000022429	Dmc1	Dmc1h|Lim15|Mei11|sgdp	DNA meiotic recombinase 1	protein-coding	0.110000	0.721393	
mm_150172.1	chr19	32543339	32543539	+	1	NA	NA	NA	-52276	NM_001201470	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.005000	0.487562	
mm_156635.1	chrX	156491552	156491752	+	1	NA	NA	NA	-47831	NR_033598	74941	Mm.484588	NR_033598		4930503H13Rik	-	gem (nuclear organelle) associated protein 8 pseudogene	pseudo	0.015000	0.492537	
mm_55205.1	chr6	52211590	52211790	-	1	NA	NA	NA	1377	NM_010452	15400	Mm.71533	NM_010452	ENSMUSG00000079560	Hoxa3	Hox-1.5|Mo-10	homeobox A3	protein-coding	0.085000	0.666667	
mm_115382.1	chr13	113101028	113101228	+	1	NA	NA	NA	-147	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.015000	0.462687	
mm_38439.1	chr4	139832836	139833036	-	1	NA	NA	NA	32	NM_011039	18509	Mm.218760	NM_011039	ENSMUSG00000028736	Pax7	Pax-7	paired box 7	protein-coding	0.080000	0.661692	
mm_158266.1	chrX	109160650	109160850	-	1	NA	NA	NA	-36006	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.015000	0.383085	
mm_54321.1	chr6	30304442	30304642	-	1	NA	NA	NA	-3	NM_001169576	22214	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0.095000	0.661692	
mm_58723.1	chr7	13024561	13024761	+	1	NA	NA	NA	509	NM_011588	21849	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	0.170000	0.815920	
mm_33096.1	chr4	124698128	124698328	+	1	NA	NA	NA	-2471	NM_010213	14201	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	0.005000	0.472637	
mm_116000.1	chr13	24415396	24415596	-	1	NA	NA	NA	374	NM_001284520	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.015000	0.467662	
mm_2950.1	chr1	132417290	132417490	+	1	NA	NA	NA	-63	NM_172516	213452	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	0.075000	0.686567	
mm_141222.1	chr17	27244971	27245171	-	1	NA	NA	NA	2995	NR_131118	319720	Mm.394996	NR_131118		9630028I04Rik	-	RIKEN cDNA 9630028I04 gene	ncRNA	0.005000	0.537313	
mm_14651.1	chr2	136911298	136911498	+	1	NA	NA	NA	12047	NM_001038641	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.005000	0.383085	
mm_12763.1	chr2	79256028	79256228	+	1	NA	NA	NA	702	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.020000	0.592040	
mm_22335.1	chr2	180709034	180709234	-	1	NA	NA	NA	865	NM_177852	23856	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.015000	0.422886	
mm_86751.1	chr10	19591920	19592120	+	1	NA	NA	NA	71	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.080000	0.691542	
mm_107322.1	chr12	31418629	31418829	+	1	NA	NA	NA	-19490	NM_021353	13487	Mm.490454	NM_021353	ENSMUSG00000001225	Slc26a3	9030623B18Rik|9130013M11Rik|AV376035|Dra	solute carrier family 26, member 3	protein-coding	0.030000	0.432836	
mm_1667.1	chr1	74771823	74772023	+	1	NA	NA	NA	31	NM_009526	22420	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	0.110000	0.776119	
mm_48830.1	chr5	149181841	149182041	-	1	NA	NA	NA	95	NR_015478	433966	Mm.207047	NR_015478	ENSMUSG00000097191	5730422E09Rik	-	RIKEN cDNA 5730422E09 gene	ncRNA	0.015000	0.407960	
mm_3724.1	chr1	154205048	154205248	+	1	NA	NA	NA	3961	NM_001204908	100503355	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	ENSMUSG00000066797|Gm10178|Gm203	zinc finger protein 648	protein-coding	0.085000	0.691542	
mm_108385.1	chr12	80945403	80945603	+	1	NA	NA	NA	4	NM_001347415	20384	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0.065000	0.577114	
mm_53325.1	chr6	129229280	129229480	+	1	NA	NA	NA	8665	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.005000	0.437811	-100(ATCTCTAAAGGG,-,0.00),-34(TTCCATTTAAGG,-,0.00),-32(CCATTTAAGGGT,+,0.00)
mm_1748.1	chr1	75505552	75505752	+	1	NA	NA	NA	800	NM_178884	98733	Mm.236454	NM_178884	ENSMUSG00000026211	Obsl1	AW822216	obscurin-like 1	protein-coding	0.130000	0.696517	
mm_23217.1	chr3	46673005	46673205	+	1	NA	NA	NA	-225164	NM_001101479	241989	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding	0.000000	0.323383	
mm_163288.1	chr11	118145898	118146098	+	1	NA	NA	NA	-16779	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.035000	0.557214	
mm_93301.1	chr10	96664117	96664317	-	1	NA	NA	NA	47216	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.015000	0.492537	
mm_108737.1	chr12	88360715	88360915	+	1	NA	NA	NA	33	NM_028105	72113	Mm.181387	NM_028105	ENSMUSG00000021044	Adck1	2610005A10Rik	aarF domain containing kinase 1	protein-coding	0.045000	0.621891	
mm_157158.1	chrX	9463744	9463944	-	1	NA	NA	NA	5480	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.323383	
mm_99565.1	chr11	103810101	103810301	+	1	NA	NA	NA	36026	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding	0.145000	0.771144	
mm_140125.1	chr17	79614938	79615138	+	1	NA	NA	NA	138	NM_201361	381110	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.070000	0.671642	
mm_168130.1	chr10	25382086	25382286	+	1	NA	NA	NA	22388	NM_001199265	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.025000	0.606965	
mm_141848.1	chr17	34801657	34801857	-	1	NA	NA	NA	2669	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.040000	0.572139	-9(GTCTCTTTAAAG,-,0.00)
mm_96834.1	chr11	70017039	70017239	+	1	NA	NA	NA	-1466	NM_001109752	13385	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs, large homolog 4 (Drosophila)	protein-coding	0.025000	0.467662	
mm_149037.1	chr19	8819900	8820100	+	1	NA	NA	NA	599	NM_001081196	68693	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0.100000	0.661692	
mm_127388.1	chr15	101041022	101041222	+	1	NA	NA	NA	13277	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.000000	0.338308	-51(CACTTTAAAAGT,-,0.00)
mm_158206.1	chrX	105855815	105856015	-	1	NA	NA	NA	73457	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.010000	0.373134	
mm_82210.1	chr9	124121459	124121659	+	1	NA	NA	NA	16	NM_009917	12774	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0.010000	0.452736	
mm_126751.1	chr15	85746789	85746989	+	1	NA	NA	NA	11113	NM_011144	19013	Mm.212789	NM_011144	ENSMUSG00000022383	Ppara	4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar	peroxisome proliferator activated receptor alpha	protein-coding	0.030000	0.532338	
mm_19905.1	chr2	114157493	114157693	-	1	NA	NA	NA	-7023	NR_105968	102465982		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	0.015000	0.407960	-98(GACTCTAAAAGG,-,0.00),-9(GACTTGATAAGG,-,0.00)
mm_24921.1	chr3	96402030	96402230	+	1	NA	NA	NA	12703	NR_001579	21748		NR_001579	ENSMUSG00000064796	Terc	mTER|mTR	telomerase RNA component	ncRNA	0.100000	0.631841	
mm_120886.1	chr14	75446569	75446769	+	1	NA	NA	NA	-9313	NM_001128093	380918	Mm.484360	NM_001128093	ENSMUSG00000091722	Siah3	Gm912	seven in absentia homolog 3 (Drosophila)	protein-coding	0.000000	0.477612	
mm_130904.1	chr15	102510537	102510737	-	1	NA	NA	NA	6367	NM_001163643	26404	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0.085000	0.711443	
mm_75650.1	chr8	65129279	65129479	-	1	NA	NA	NA	158	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA	0.030000	0.492537	
mm_60306.1	chr7	44105473	44105673	+	1	NA	NA	NA	3281	NM_010642	16616	Mm.443292	NM_010642	ENSMUSG00000066516	Klk1b21	Klk21|mGk-21	kallikrein 1-related peptidase b21	protein-coding	0.010000	0.497512	
mm_59386.1	chr7	26221816	26222016	+	1	NA	NA	NA	-44915	NM_001167540	100312477	Mm.480246	NM_001167540	ENSMUSG00000046130	Vmn1r184	-	vomeronasal 1 receptor, 184	protein-coding	0.005000	0.303483	
mm_140417.1	chr17	87650725	87650925	+	1	NA	NA	NA	14846	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.015000	0.313433	
mm_90009.1	chr10	114757675	114757875	+	1	NA	NA	NA	43595	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	0.015000	0.422886	
mm_18512.1	chr2	62622054	62622254	-	1	NA	NA	NA	24101	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.010000	0.378109	
mm_110978.1	chr12	77052759	77052959	-	1	NA	NA	NA	-90611	NM_001146176	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.005000	0.457711	
mm_98215.1	chr11	87801139	87801339	+	1	NA	NA	NA	7455	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.030000	0.542289	
mm_164411.1	chr16	36642627	36642827	-	1	NA	NA	NA	23350	NM_019388	12524	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.015000	0.457711	
mm_29613.1	chr3	121277035	121277235	-	1	NA	NA	NA	-13819	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0.015000	0.467662	
mm_102839.1	chr11	69332017	69332217	-	1	NA	NA	NA	5859	NM_010599	16499	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0.055000	0.552239	
mm_150684.1	chr19	42090362	42090562	+	1	NA	NA	NA	27	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	0.115000	0.736318	
mm_88148.1	chr10	69533726	69533926	+	1	NA	NA	NA	118	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.025000	0.462687	
mm_38169.1	chr4	135217043	135217243	-	1	NA	NA	NA	55617	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.055000	0.517413	
mm_129827.1	chr15	83127516	83127716	-	1	NA	NA	NA	-4815	NM_029101	74778	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.020000	0.542289	
mm_129830.1	chr15	83138099	83138299	-	1	NA	NA	NA	11137	NM_178627	73826	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0.030000	0.592040	
mm_115903.1	chr13	23423671	23423871	-	1	NA	NA	NA	95	NM_013924	30946	Mm.292094	NM_013924	ENSMUSG00000036376	Abt1	-	activator of basal transcription 1	protein-coding	0.055000	0.601990	
mm_273.1	chr1	21218742	21218942	+	1	NA	NA	NA	267	NM_029398	75712	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	0.035000	0.542289	64(TCCCTTAAAAGA,-,0.00),65(CCCTTAAAAGAA,+,0.00)
mm_2918.1	chr1	132017659	132017859	+	1	NA	NA	NA	10154	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.010000	0.452736	
mm_102426.1	chr11	59449846	59450046	-	1	NA	NA	NA	10	NM_144521	67826	Mm.26680	NM_144521	ENSMUSG00000009894	Snap47	1110031B06Rik|SNAP-47	synaptosomal-associated protein, 47	protein-coding	0.085000	0.661692	
mm_89325.1	chr10	87931384	87931584	+	1	NA	NA	NA	-35187	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.283582	
mm_62111.1	chr7	96532629	96532829	+	1	NA	NA	NA	-190765	NR_046043	670727	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	OTTMUSG00000021245	predicted gene 15412	ncRNA	0.025000	0.562189	
mm_118199.1	chr13	107889966	107890166	-	1	NA	NA	NA	-2	NM_145456	67263	Mm.490418	NM_145456	ENSMUSG00000032846	Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.165000	0.736318	-34(CCGTTTATAGGG,-,0.00)
mm_135189.1	chr16	36334239	36334439	-	1	NA	NA	NA	-7	NM_001001332	100038854	Mm.383561	NM_001001332	ENSMUSG00000079594	BC117090	Gm1975	cDNA sequence BC1179090	protein-coding	0.005000	0.437811	-36(CCTTTAAAACCC,+,0.00)
mm_34179.1	chr4	140699892	140700092	+	1	NA	NA	NA	-1481	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.045000	0.482587	66(GTCTATTAAGAG,-,0.00)
mm_101956.1	chr11	50298088	50298288	-	1	NA	NA	NA	-5852	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.005000	0.437811	
mm_80979.1	chr9	103208789	103208989	+	1	NA	NA	NA	-6824	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.010000	0.407960	
mm_45549.1	chr5	73024709	73024909	-	1	NA	NA	NA	17905	NM_173403	231290	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	0.010000	0.338308	
mm_47927.1	chr5	135013020	135013220	-	1	NA	NA	NA	37	NR_026688	69812	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0.005000	0.542289	
mm_145581.1	chr18	60969568	60969768	+	1	NA	NA	NA	6114	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.015000	0.542289	
mm_64269.1	chr7	141788870	141789070	+	1	NA	NA	NA	-41	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.015000	0.601990	
mm_19744.1	chr2	104816667	104816867	-	1	NA	NA	NA	-71	NM_001123327	99003	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	0.155000	0.835821	
mm_69509.1	chr7	134413750	134413950	-	1	NA	NA	NA	-37022	NM_001081331	71007	Mm.334285	NM_001081331	ENSMUSG00000030994	D7Ertd443e	4933400E14Rik|FATS|Gm497	DNA segment, Chr 7, ERATO Doi 443, expressed	protein-coding	0.010000	0.557214	
mm_149179.1	chr19	9283485	9283685	+	1	NA	NA	NA	-148019	NM_025610	66514	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	0.045000	0.502488	
mm_97453.1	chr11	78194602	78194802	+	1	NA	NA	NA	1310	NM_001045516	216974	Mm.50974	NM_001045516	ENSMUSG00000044122	Proca1	4933404M19Rik	protein interacting with cyclin A1	protein-coding	0.055000	0.626866	
mm_86187.1	chr9	119339912	119340112	-	1	NA	NA	NA	28	NM_010851	17874	Mm.213003	NM_010851	ENSMUSG00000032508	Myd88	-	myeloid differentiation primary response gene 88	protein-coding	0.060000	0.626866	
mm_43547.1	chr5	137564434	137564634	+	1	NA	NA	NA	-5306	NM_001289509	50765	Mm.21757	NM_015799	ENSMUSG00000029716	Tfr2	Trfr2	transferrin receptor 2	protein-coding	0.005000	0.582090	58(CCTTATCAGGGG,+,0.00)
mm_98587.1	chr11	95763525	95763725	+	1	NA	NA	NA	14558	NM_201609	268469	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	0.045000	0.552239	
mm_100157.1	chr11	116232620	116232820	+	1	NA	NA	NA	5371	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding	0.050000	0.636816	
mm_68700.1	chr7	119631515	119631715	-	1	NA	NA	NA	13787	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.000000	0.388060	-35(ACCTTTTAAAAG,-,0.00),-34(CCTTTTAAAAGA,+,0.00),-34(CCTTTTAAAAGA,-,0.00),-33(CTTTTAAAAGAG,+,0.00)
mm_60253.1	chr7	43782730	43782930	+	1	NA	NA	NA	1776	NM_133712	69540	Mm.46421	NM_133712	ENSMUSG00000030693	Klk10	2300002A13Rik|NES1|PRSSL1	kallikrein related-peptidase 10	protein-coding	0.075000	0.621891	
mm_76306.1	chr8	84587512	84587712	-	1	NA	NA	NA	75240	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.010000	0.577114	-71(CCTCATAGAGGG,+,0.00)
mm_40684.1	chr5	65584685	65584885	+	1	NA	NA	NA	47540	NM_001310619	53323	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.005000	0.368159	14(GTTTTTAAACTG,+,0.00)
mm_40884.1	chr5	74581148	74581348	+	1	NA	NA	NA	45766	NM_001159574	66899	Mm.272468	NM_024183	ENSMUSG00000029227	Fip1l1	1300019H17Rik|Rje	FIP1 like 1 (S. cerevisiae)	protein-coding	0.005000	0.412935	
mm_26233.1	chr3	139933216	139933416	+	1	NA	NA	NA	-94933	NR_105798	102465198		NR_105798	ENSMUSG00000099169	Mir7j	Gm27716|Mirlet7j|mmu-let-7j	microRNA 7j	ncRNA	0.020000	0.477612	
mm_58003.1	chr6	136415470	136415670	-	1	NA	NA	NA	-1	NM_001201390	100502936	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	0.020000	0.542289	-32(GGCCATAAAGGA,-,0.00)
mm_32880.1	chr4	118741558	118741758	+	1	NA	NA	NA	7127	NM_146852	258851	Mm.377719	NM_146852	ENSMUSG00000070820	Olfr1339	MOR258-2	olfactory receptor 1339	protein-coding	0.020000	0.502488	
mm_35335.1	chr4	31877436	31877636	-	1	NA	NA	NA	-86571	NM_009316	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.015000	0.512438	
mm_123780.1	chr14	70331218	70331418	-	1	NA	NA	NA	17115	NM_001135152	213053	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0.000000	0.512438	
mm_34591.1	chr4	150189102	150189302	+	1	NA	NA	NA	11933	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.015000	0.457711	
mm_172054.1	chr6	128843194	128843394	+	1	NA	NA	NA	-16979	NM_030599	80782	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0.060000	0.522388	
mm_128560.1	chr15	55916970	55917170	-	1	NA	NA	NA	-10121	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding	0.000000	0.432836	
mm_30663.1	chr4	9952880	9953080	+	1	NA	NA	NA	-35583	NR_004448	74662	Mm.483401	NR_004448	ENSMUSG00000082843	4930448K20Rik	1700009K09Rik	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.000000	0.373134	
mm_42348.1	chr5	114911258	114911458	+	1	NA	NA	NA	-11882	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.020000	0.452736	-51(CCTTAAAGAGCT,+,0.00)
mm_104175.1	chr11	87748723	87748923	-	1	NA	NA	NA	-8041	NR_029555	387160		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.025000	0.587065	4(GCCTTTATGAGA,-,0.00)
mm_89387.1	chr10	89781077	89781277	+	1	NA	NA	NA	36186	NM_029166	75089	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0.015000	0.348259	76(ACCCTTAAAAGA,-,0.00),77(CCCTTAAAAGAA,+,0.00)
mm_124866.1	chr15	10177490	10177690	+	1	NA	NA	NA	352	NM_011169	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.035000	0.507463	-90(CCTTATAAAACT,+,0.00)
mm_111029.1	chr12	79164952	79165152	-	1	NA	NA	NA	7406	NM_016800	53612	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	0.040000	0.522388	
mm_59441.1	chr7	27132464	27132664	+	1	NA	NA	NA	12609	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.030000	0.482587	
mm_97971.1	chr11	83852832	83853032	+	1	NA	NA	NA	-28	NM_001291269	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.085000	0.587065	
mm_172040.1	chr6	127128773	127128973	-	1	NA	NA	NA	-19321	NM_177003	319801	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	0.000000	0.328358	
mm_39398.1	chr5	14025499	14025699	+	1	NA	NA	NA	323	NM_011348	20349	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	0.065000	0.651741	
mm_117036.1	chr13	58274742	58274942	-	1	NA	NA	NA	-654	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.065000	0.601990	
mm_41458.1	chr5	90905851	90906051	+	1	NA	NA	NA	2052	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.020000	0.303483	
mm_133141.1	chr16	69863707	69863907	+	1	NA	NA	NA	-63	NM_173069	224318	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0.015000	0.527363	
mm_42001.1	chr5	107900769	107900969	+	1	NA	NA	NA	341	NM_016980	100503670	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	0.110000	0.726368	
mm_56476.1	chr6	99057213	99057413	-	1	NA	NA	NA	-29015	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.015000	0.467662	
mm_67890.1	chr7	99382230	99382430	-	1	NA	NA	NA	781	NM_201352	233552	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0.065000	0.611940	
mm_114545.1	chr13	73937690	73937890	+	1	NA	NA	NA	-21	NM_001024508	105246	Mm.278509	NM_001024508	ENSMUSG00000057649	Brd9	AL022779	bromodomain containing 9	protein-coding	0.135000	0.706468	
mm_66879.1	chr7	57768599	57768799	-	1	NA	NA	NA	177526	NM_008071	14402	Mm.8004	NM_008071	ENSMUSG00000033676	Gabrb3	A230092K12Rik|AW049585|Cp1|Gabrb-3|beta3	gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	protein-coding	0.015000	0.393035	
mm_149868.1	chr19	25148326	25148526	+	1	NA	NA	NA	-88776	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.010000	0.427861	
mm_401.1	chr1	34160163	34160363	+	1	NA	NA	NA	-67	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.025000	0.462687	-37(GCATATTTAAGG,-,0.00),-4(CCTTTTAGACTG,+,0.00)
mm_95302.1	chr11	46123518	46123718	+	1	NA	NA	NA	-4286	NM_001311209	11492	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.015000	0.422886	
mm_113993.1	chr13	52583053	52583253	+	1	NA	NA	NA	-284	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.080000	0.691542	
mm_75259.1	chr8	40595048	40595248	-	1	NA	NA	NA	39644	NM_001040699	54384	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.025000	0.472637	
mm_14523.1	chr2	132691872	132692072	+	1	NA	NA	NA	1689	NM_028637	73747	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0.020000	0.577114	
mm_24518.1	chr3	92690905	92691105	+	1	NA	NA	NA	-3795	NM_027137	69611	Mm.176243	NM_027137	ENSMUSG00000103243	Lce1d	2310037L11Rik|AI415320|Sprrl7	late cornified envelope 1D	protein-coding	0.005000	0.258706	
mm_112023.1	chr12	111445564	111445764	-	1	NA	NA	NA	3003	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.105000	0.706468	
mm_3439.1	chr1	150102544	150102744	+	1	NA	NA	NA	2613	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.402985	
mm_2492.1	chr1	105991442	105991642	+	1	NA	NA	NA	1136	NM_001122675	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.080000	0.691542	
mm_48389.1	chr5	139813904	139814104	-	1	NA	NA	NA	279	NM_001161548	231832	Mm.482655	NM_144914	ENSMUSG00000036687	Tmem184a	Sdmg1	transmembrane protein 184a	protein-coding	0.045000	0.646766	
mm_73691.1	chr8	111562608	111562808	+	1	NA	NA	NA	24365	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.005000	0.432836	
mm_40077.1	chr5	34351998	34352198	+	1	NA	NA	NA	15166	NM_001304270	19822	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0.010000	0.502488	
mm_37433.1	chr4	122933933	122934133	-	1	NA	NA	NA	27155	NM_029662	76574	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.005000	0.477612	
mm_97217.1	chr11	75630854	75631054	+	1	NA	NA	NA	-66	NM_008916	19062	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.075000	0.611940	
mm_32101.1	chr4	98549598	98549798	+	1	NA	NA	NA	3064	NM_001005787	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.020000	0.512438	
mm_127035.1	chr15	96461346	96461546	+	1	NA	NA	NA	-603	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.075000	0.626866	
mm_38051.1	chr4	134000740	134000940	-	1	NA	NA	NA	24	NM_026144	67422	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	0.075000	0.616915	
mm_48862.1	chr5	149819894	149820094	-	1	NA	NA	NA	-8243	NR_077242	100861794	Mm.402054	NR_077242	ENSMUSG00000106740	Gm21221	-	predicted gene, 21221	ncRNA	0.025000	0.472637	
mm_51736.1	chr6	87093387	87093587	+	1	NA	NA	NA	-11259	NM_001167938	52372	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0.035000	0.517413	
mm_107016.1	chr12	12345216	12345416	+	1	NA	NA	NA	47159	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	0.000000	0.283582	
mm_64812.1	chr7	6709885	6710085	-	1	NA	NA	NA	3225	NR_023846	100169889	Mm.491213	NR_023846		Peg3os	Apeg3|Peg3as	Peg3 opposite strand	ncRNA	0.010000	0.432836	6(CCATTTATATCC,+,0.00)
mm_94472.1	chr11	6546787	6546987	+	1	NA	NA	NA	0	NM_146014	216527	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0.145000	0.825871	
mm_30729.1	chr4	13784946	13785146	+	1	NA	NA	NA	264	NM_009822	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.060000	0.646766	
mm_42533.1	chr5	115859028	115859228	+	1	NA	NA	NA	13472	NM_007708	12704	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0.035000	0.482587	
mm_104402.1	chr11	94509719	94509919	-	1	NA	NA	NA	-9845	NM_027984	71889	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	0.010000	0.527363	
mm_36558.1	chr4	87073172	87073372	-	1	NA	NA	NA	154691	NM_001110240	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	0.030000	0.512438	
mm_94427.1	chr11	6291531	6291731	+	1	NA	NA	NA	34	NM_001252283	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.095000	0.666667	
mm_155969.1	chrX	106085270	106085470	+	1	NA	NA	NA	-57905	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.000000	0.487562	
mm_64871.1	chr7	14254787	14254987	-	1	NA	NA	NA	-17	NM_001081325	629219	Mm.439627	NM_001081325	ENSMUSG00000070810	Sult2a6	EG629219|Gm6957	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 6	protein-coding	0.000000	0.373134	
mm_136153.1	chr16	87699961	87700161	-	1	NA	NA	NA	1107	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.035000	0.482587	-33(CTCTTTTAAAGA,-,0.00),-32(TCTTTTAAAGAG,+,0.00)
mm_43665.1	chr5	138754680	138754880	+	1	NA	NA	NA	-301	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.120000	0.736318	
mm_137740.1	chr17	29360876	29361076	+	1	NA	NA	NA	62	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.010000	0.577114	
mm_119481.1	chr14	47351577	47351777	+	1	NA	NA	NA	-22183	NM_010705	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.015000	0.482587	-33(TTCTATAAAAAC,-,0.00)
mm_31760.1	chr4	63381271	63381471	+	1	NA	NA	NA	16869	NM_001305432	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.025000	0.522388	38(TCCTTTAAACAC,+,0.00)
mm_39035.1	chr4	152305177	152305377	-	1	NA	NA	NA	8063	NM_133788	57295	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|OTTMUSG00000010406|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	0.005000	0.472637	
mm_99233.1	chr11	101063000	101063200	+	1	NA	NA	NA	-6994	NM_013792	27419	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.015000	0.567164	
mm_153100.1	chr19	32712653	32712853	-	1	NA	NA	NA	-455	NM_026487	67979	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.035000	0.577114	
mm_131256.1	chr16	10772250	10772450	+	1	NA	NA	NA	13186	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.045000	0.606965	
mm_144744.1	chr18	35598530	35598730	+	1	NA	NA	NA	-37	NM_026420	67869	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	0.100000	0.651741	
mm_72057.1	chr8	71371699	71371899	+	1	NA	NA	NA	501	NM_001293800	77090	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	0.110000	0.736318	
mm_55922.1	chr6	83888514	83888714	-	1	NA	NA	NA	-25739	NM_001166371	18139	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	0.005000	0.522388	-33(TGCTATAAAAGG,-,0.00)
mm_123512.1	chr14	66242398	66242598	-	1	NA	NA	NA	-28946	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.000000	0.358209	
mm_2049.1	chr1	87362564	87362764	+	1	NA	NA	NA	32065	NM_001110227	100040591	Mm.443539	NM_001110227	ENSMUSG00000079436	Kcnj13	-	potassium inwardly-rectifying channel, subfamily J, member 13	protein-coding	0.005000	0.427861	
mm_127313.1	chr15	100251591	100251791	+	1	NA	NA	NA	23832	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.015000	0.467662	-7(GACTTTAAAGAC,-,0.00)
mm_10184.1	chr2	4881664	4881864	+	1	NA	NA	NA	200	NM_175400	109079	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0.140000	0.666667	
mm_33483.1	chr4	130818864	130819064	+	1	NA	NA	NA	26427	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.030000	0.651741	
mm_31060.1	chr4	41314240	41314440	+	1	NA	NA	NA	561	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.055000	0.601990	
mm_32084.1	chr4	98396293	98396493	+	1	NA	NA	NA	567	NM_172696	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.025000	0.512438	
mm_75772.1	chr8	69989667	69989867	-	1	NA	NA	NA	6617	NM_001286450	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.000000	0.373134	
mm_146051.1	chr18	69593531	69593731	+	1	NA	NA	NA	247910	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.050000	0.517413	
mm_28125.1	chr3	86998915	86999115	-	1	NA	NA	NA	325	NM_007639	12479	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0.030000	0.547264	
mm_157806.1	chrX	73930643	73930843	-	1	NA	NA	NA	107	NM_023132	19703	Mm.236969	NM_023132	ENSMUSG00000031387	Renbp	Age|Rnbp	renin binding protein	protein-coding	0.025000	0.512438	
mm_160362.1	chr8	21946608	21946808	+	1	NA	NA	NA	-54	NM_139223	246083	Mm.219548	NM_139223	ENSMUSG00000044222	Defb13	BD-13	defensin beta 13	protein-coding	0.025000	0.467662	
mm_126105.1	chr15	78247347	78247547	+	1	NA	NA	NA	2636	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.030000	0.527363	
mm_121416.1	chr14	119719240	119719440	+	1	NA	NA	NA	-29887	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA	0.005000	0.567164	74(GTGTCTATATGG,-,0.00),76(GTCTATATGGCC,+,0.00)
mm_162706.1	chr10	23237120	23237320	-	1	NA	NA	NA	112670	NM_001347372	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.025000	0.532338	
mm_140706.1	chr17	14693991	14694191	-	1	NA	NA	NA	171	NM_011581	21826	Mm.26688	NM_011581	ENSMUSG00000023885	Thbs2	TSP2|Thbs-2	thrombospondin 2	protein-coding	0.050000	0.601990	-33(GCGTATAAAGGA,-,0.00)
mm_20335.1	chr2	127541297	127541497	-	1	NA	NA	NA	20	NM_178047	192212	Mm.34171	NM_138750	ENSMUSG00000027376	Prom2	AI507243|Prom-rp	prominin 2	protein-coding	0.090000	0.681592	
mm_4331.1	chr1	171854772	171854972	+	1	NA	NA	NA	15175	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.000000	0.378109	-26(GACTCTAAAGGC,-,0.00)
mm_23777.1	chr3	77033610	77033810	+	1	NA	NA	NA	958127	NM_001253719	213262	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	0.000000	0.273632	-78(ATTTATAAAAGG,-,0.00)
mm_51510.1	chr6	83137043	83137243	+	1	NA	NA	NA	59	NM_009106	20166	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0.050000	0.626866	
mm_91780.1	chr10	52195267	52195467	-	1	NA	NA	NA	-123	NM_011282	19886	Mm.236163	NM_011282	ENSMUSG00000019893	Ros1	Ros-1|c-ros	Ros1 proto-oncogene	protein-coding	0.020000	0.432836	
mm_171046.1	chr3	100131394	100131594	-	1	NA	NA	NA	30909	NM_175552	269470	Mm.24591	NM_175552	ENSMUSG00000033285	Wdr3	AW546279|D030020G18Rik	WD repeat domain 3	protein-coding	0.035000	0.552239	
mm_50510.1	chr6	49038018	49038218	+	1	NA	NA	NA	1600	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.005000	0.477612	-40(GCATTTTTAAGG,-,0.00)
mm_83572.1	chr9	47474759	47474959	-	1	NA	NA	NA	-55311	NM_001310841	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.005000	0.492537	
mm_126073.1	chr15	77618868	77619068	+	1	NA	NA	NA	-22843	NM_177820	328561	Mm.379486	NM_177820	ENSMUSG00000050014	Apol10b	9130218O11Rik	apolipoprotein L 10B	protein-coding	0.005000	0.457711	-33(GGGTATATAAGC,-,0.00)
mm_58491.1	chr7	3694432	3694632	+	1	NA	NA	NA	24	NM_024168	66078	Mm.379100	NM_024168	ENSMUSG00000035585	Tsen34	0610027F08Rik|Leng5	tRNA splicing endonuclease subunit 34	protein-coding	0.065000	0.696517	
mm_121465.1	chr14	120896788	120896988	+	1	NA	NA	NA	-14306	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	0.025000	0.512438	
mm_164098.1	chr15	14645091	14645291	+	1	NA	NA	NA	-1471516	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.005000	0.427861	
mm_51572.1	chr6	83742953	83743153	+	1	NA	NA	NA	36	NM_134157	110935	Mm.220823	NM_134157	ENSMUSG00000006269	Atp6v1b1	AW208839|Atp6b1|D630003L15|D630030L16Rik|D630039P21Rik|Vpp-3|Vpp3	ATPase, H+ transporting, lysosomal V1 subunit B1	protein-coding	0.015000	0.577114	
mm_146221.1	chr18	77057328	77057528	+	1	NA	NA	NA	-7780	NM_008602	17344	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0.005000	0.432836	
mm_15540.1	chr2	158384523	158384723	+	1	NA	NA	NA	8985	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.010000	0.452736	
mm_147830.1	chr18	62188783	62188983	-	1	NA	NA	NA	-8902	NM_007420	11555	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.030000	0.542289	
mm_75610.1	chr8	62123034	62123234	-	1	NA	NA	NA	59	NM_001136089	26359	Mm.42179	NM_011922	ENSMUSG00000031635	Anxa10	-	annexin A10	protein-coding	0.000000	0.422886	
mm_160226.1	chr7	102065365	102065565	-	1	NA	NA	NA	-26	NR_104582	102443351	Mm.292904	NM_011644	ENSMUSG00000070425	Xntrpc	Xndr-trpc2	Xndc1-transient receptor potential cation channel, subfamily C, member 2 readthrough	protein-coding	0.065000	0.517413	
mm_116972.1	chr13	56178728	56178928	-	1	NA	NA	NA	57	NM_145976	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.025000	0.547264	
mm_164698.1	chr17	49117529	49117729	+	1	NA	NA	NA	-4096	NR_038144	69311	Mm.46140	NR_038141	ENSMUSG00000101012	1700008K24Rik	-	RIKEN cDNA 1700008K24 gene	ncRNA	0.005000	0.398010	
mm_15772.1	chr2	164332697	164332897	+	1	NA	NA	NA	32	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.015000	0.502488	
mm_76979.1	chr8	106886245	106886445	-	1	NA	NA	NA	7248	NM_145412	214987	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	0.035000	0.512438	
mm_63603.1	chr7	128147963	128148163	+	1	NA	NA	NA	18495	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.020000	0.557214	
mm_97721.1	chr11	80300778	80300978	+	1	NA	NA	NA	-34	NM_139228	246104	Mm.194148	NM_139228	ENSMUSG00000017692	Rhbdl3	AI847581|Rhbdl4|Rhomr1|Vrho	rhomboid, veinlet-like 3 (Drosophila)	protein-coding	0.145000	0.835821	
mm_104483.1	chr11	95580908	95581108	-	1	NA	NA	NA	6690	NM_033217	18053	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	0.015000	0.577114	
mm_135112.1	chr16	35770143	35770343	-	1	NA	NA	NA	-143	NM_175111	66667	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	0.065000	0.572139	
mm_49470.1	chr6	29471377	29471577	+	1	NA	NA	NA	40	NM_001145360	668210	Mm.420607	NM_001145360	ENSMUSG00000090685	Gm9047	EG668210	predicted gene 9047	protein-coding	0.010000	0.552239	
mm_65116.1	chr7	19359346	19359546	-	1	NA	NA	NA	37	NM_145822	70333	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	0.070000	0.656716	
mm_99775.1	chr11	107189337	107189537	+	1	NA	NA	NA	-56	NM_001161329	68979	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.070000	0.582090	
mm_70401.1	chr8	11312764	11312964	+	1	NA	NA	NA	-38	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.120000	0.731343	
mm_156302.1	chrX	136837814	136838014	+	1	NA	NA	NA	15168	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.353234	81(CAATATATAAGG,-,0.00)
mm_7408.1	chr1	119421058	119421258	-	1	NA	NA	NA	1090	NM_008381	16324	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	0.175000	0.860697	
mm_79580.1	chr9	58134961	58135161	+	1	NA	NA	NA	396	NM_001162479	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.005000	0.457711	-46(TTCCTTTTAAGC,-,0.00),-44(CCTTTTAAGCCT,+,0.00)
mm_55499.1	chr6	69751241	69751441	-	1	NA	NA	NA	-424167	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.482587	
mm_24537.1	chr3	93279494	93279694	+	1	NA	NA	NA	-40155	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.010000	0.398010	
mm_108109.1	chr12	75308345	75308545	+	1	NA	NA	NA	132	NM_023275	80837	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	0.030000	0.532338	-53(CCGTTTAAAAGC,-,0.00)
mm_61641.1	chr7	80343019	80343219	+	1	NA	NA	NA	-18	NM_026812	68695	Mm.21171	NM_026812	ENSMUSG00000030532	Hddc3	1110033O09Rik|C86475|MESH1	HD domain containing 3	protein-coding	0.085000	0.572139	
mm_148436.1	chr19	3944059	3944259	+	1	NA	NA	NA	8973	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.030000	0.616915	31(CTTTTTCTGGGC,+,0.00)
mm_32650.1	chr4	115063278	115063478	+	1	NA	NA	NA	5567	NM_001287388	21349	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.135000	0.761194	-32(GGACTTAAAGGG,-,0.00)
mm_104857.1	chr11	99366007	99366207	-	1	NA	NA	NA	8796	NM_027574	70843	Mm.180256	NM_027574	ENSMUSG00000055937	Krt28	4733401L19Rik|Krt25d	keratin 28	protein-coding	0.010000	0.398010	
mm_138030.1	chr17	33919392	33919592	+	1	NA	NA	NA	14	NM_009318	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.060000	0.636816	
mm_42108.1	chr5	110544288	110544488	+	1	NA	NA	NA	33	NM_198306	231605	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	0.165000	0.786070	
mm_105476.1	chr11	105936809	105937009	-	1	NA	NA	NA	7238	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.010000	0.537313	
mm_56049.1	chr6	86741850	86742050	-	1	NA	NA	NA	-8572	NM_011818	23885	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	0.025000	0.527363	
mm_109326.1	chr12	109564570	109564770	+	1	NA	NA	NA	978	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.010000	0.388060	30(TTTTTTAAAGCT,+,0.00)
mm_136957.1	chr17	15374532	15374732	+	1	NA	NA	NA	1191	NM_007865	13388	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta-like 1 (Drosophila)	protein-coding	0.045000	0.626866	
mm_158579.1	chrX	150657272	150657472	-	1	NA	NA	NA	64	NM_019548	56191	Mm.3597	NM_019548	ENSMUSG00000025272	Tro	AA409408|Maged3|Maged3l|Tnn|Trol|magphinin	trophinin	protein-coding	0.060000	0.656716	
mm_139931.1	chr17	71064005	71064205	+	1	NA	NA	NA	44548	NM_001083934	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.015000	0.497512	
mm_118149.1	chr13	105242542	105242742	-	1	NA	NA	NA	50372	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.000000	0.373134	
mm_165879.1	chr4	41284256	41284456	+	1	NA	NA	NA	-9221	NM_026872	68926	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0.005000	0.492537	
mm_103149.1	chr11	70322429	70322629	-	1	NA	NA	NA	-11	NM_145684	11685	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	0.015000	0.532338	
mm_83657.1	chr9	49517469	49517669	-	1	NA	NA	NA	-719	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.020000	0.532338	
mm_19824.1	chr2	110950100	110950300	-	1	NA	NA	NA	44	NM_001128103	228432	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding	0.035000	0.547264	
mm_42777.1	chr5	121385377	121385577	+	1	NA	NA	NA	138	NM_001163470	231712	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.175000	0.840796	
mm_54255.1	chr6	28262379	28262579	-	1	NA	NA	NA	-878	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.035000	0.552239	
mm_114199.1	chr13	55929204	55929404	+	1	NA	NA	NA	-97879	NM_011097	18740	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.020000	0.507463	
mm_12128.1	chr2	61649739	61649939	+	1	NA	NA	NA	56742	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.025000	0.437811	
mm_35609.1	chr4	43340035	43340235	-	1	NA	NA	NA	-41847	NM_001037709	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.005000	0.437811	-54(CCCTATATAAAC,-,0.00)
mm_51298.1	chr6	72307075	72307275	+	1	NA	NA	NA	2565	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.020000	0.582090	
mm_78918.1	chr9	45039652	45039852	+	1	NA	NA	NA	-2592	NM_007962	14012	Mm.33240	NM_007962	ENSMUSG00000032092	Mpzl2	Eva|Eva1	myelin protein zero-like 2	protein-coding	0.010000	0.393035	
mm_137409.1	chr17	26113225	26113425	+	1	NA	NA	NA	9	NM_021793	60455	Mm.304656	NM_021793	ENSMUSG00000024180	Tmem8	AW490096|M83|Tmem8a	transmembrane protein 8 (five membrane-spanning domains)	protein-coding	0.125000	0.776119	
mm_76843.1	chr8	105289403	105289603	-	1	NA	NA	NA	25	NM_001166394	74356	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0.130000	0.671642	
mm_6094.1	chr1	63214216	63214416	-	1	NA	NA	NA	-35	NM_146250	241070	Mm.103354	NM_146250	ENSMUSG00000046856	Gpr1	-	G protein-coupled receptor 1	protein-coding	0.010000	0.452736	
mm_8533.1	chr1	155054656	155054856	-	1	NA	NA	NA	44880	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.010000	0.452736	
mm_133072.1	chr16	58677705	58677905	+	1	NA	NA	NA	7597	NM_007757	12892	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0.025000	0.487562	
mm_89654.1	chr10	97480121	97480321	+	1	NA	NA	NA	721	NM_001190451	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.010000	0.363184	-99(CTCTTTATAAAC,-,0.00),-97(CTTTATAAACTG,+,0.00),-39(AGGTATTTAAGG,-,0.00)
mm_129633.1	chr15	80235222	80235422	-	1	NA	NA	NA	1242	NM_178719	239555	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.005000	0.417910	-96(TCCTAAAAAGCC,+,0.00),-10(CACCATATAAGC,-,0.00)
mm_141996.1	chr17	35188337	35188537	-	1	NA	NA	NA	3	NM_010734	16988	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	0.010000	0.517413	
mm_77551.1	chr8	123254083	123254283	-	1	NA	NA	NA	-12	NM_020497	57247	Mm.379084	NM_020497	ENSMUSG00000001065	Zfp276	AW048709|D8Ertd370e|D8Ertd377e|Znf276	zinc finger protein (C2H2 type) 276	protein-coding	0.155000	0.800995	
mm_52887.1	chr6	122571458	122571658	+	1	NA	NA	NA	17749	NM_009645	11628	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.010000	0.378109	
mm_149376.1	chr19	11375473	11375673	+	1	NA	NA	NA	85	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.010000	0.457711	
mm_52307.1	chr6	108828454	108828654	+	1	NA	NA	NA	-87	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.125000	0.756219	-76(GCCTATAGAGCC,+,0.00),81(TTCCTTAAAGGG,-,0.00),83(CCTTAAAGGGGA,+,0.00)
mm_169644.1	chr15	50889012	50889212	-	1	NA	NA	NA	2	NR_035444	100316685		NR_035444	ENSMUSG00000084458	Mir1907	Mirn1907|mmu-mir-1907	microRNA 1907	ncRNA	0.045000	0.611940	
mm_84210.1	chr9	61105286	61105486	-	1	NA	NA	NA	0	NR_105026	66785	Mm.158134	NR_105026	ENSMUSG00000111807	4933433G08Rik	-	RIKEN cDNA 4933433G08 gene	ncRNA	0.005000	0.412935	-79(CCTTAAATACAA,+,0.00)
mm_110909.1	chr12	76176966	76177166	-	1	NA	NA	NA	193	NM_010157	13983	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0.050000	0.606965	80(GCATTTAGAGAA,+,0.00)
mm_153245.1	chr19	36119740	36119940	-	1	NA	NA	NA	4	NM_013468	107765	Mm.10279	NM_013468	ENSMUSG00000024803	Ankrd1	Alrp|CARP|Crap|MARP1	ankyrin repeat domain 1 (cardiac muscle)	protein-coding	0.010000	0.542289	
mm_45448.1	chr5	67427977	67428177	-	1	NA	NA	NA	-278	NM_001164806	666938	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.085000	0.671642	
mm_136114.1	chr16	85550294	85550494	-	1	NA	NA	NA	-21	NM_144853	224405	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding	0.040000	0.626866	
mm_34186.1	chr4	140701388	140701588	+	1	NA	NA	NA	15	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.120000	0.676617	
mm_92867.1	chr10	81627460	81627660	-	1	NA	NA	NA	48	NM_181586	50721	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0.095000	0.611940	
mm_14670.1	chr2	139493863	139494063	+	1	NA	NA	NA	43	NM_175467	228677	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	0.005000	0.432836	
mm_73178.1	chr8	95056608	95056808	+	1	NA	NA	NA	1605	NM_001042715	330830	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.020000	0.587065	
mm_103457.1	chr11	76304079	76304279	-	1	NA	NA	NA	60443	NM_183263	67390	Mm.24886	NM_183263	ENSMUSG00000038046	Rnmtl1	4833420N02Rik|AI255153|HC90|Mrm3	RNA methyltransferase like 1	protein-coding	0.010000	0.363184	
mm_28394.1	chr3	90044940	90045140	-	1	NA	NA	NA	-6596	NM_001287087	99650	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	0.025000	0.447761	
mm_14737.1	chr2	144337341	144337541	+	1	NA	NA	NA	-5361	NM_026924	107586	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0.015000	0.472637	
mm_21673.1	chr2	164425720	164425920	-	1	NA	NA	NA	17368	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.000000	0.452736	
mm_60305.1	chr7	44102227	44102427	+	1	NA	NA	NA	35	NM_010642	16616	Mm.443292	NM_010642	ENSMUSG00000066516	Klk1b21	Klk21|mGk-21	kallikrein 1-related peptidase b21	protein-coding	0.010000	0.562189	-35(GGGTTTTAAAGT,-,0.00)
mm_99854.1	chr11	109362970	109363170	+	1	NA	NA	NA	276	NM_010303	14674	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0.110000	0.646766	
mm_144597.1	chr18	32377037	32377237	+	1	NA	NA	NA	-80	NM_001083334	30948	Mm.4383	NM_009668	ENSMUSG00000024381	Bin1	ALP-1|Amphl|BRAMP-2|SH3P9	bridging integrator 1	protein-coding	0.060000	0.686567	-34(GCCCTTTAAAAG,-,0.00),-33(CCCTTTAAAAGG,+,0.00),-33(CCCTTTAAAAGG,-,0.00),-32(CCTTTAAAAGGC,+,0.00)
mm_156052.1	chrX	109095402	109095602	+	1	NA	NA	NA	95	NM_019989	56726	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	0.030000	0.582090	46(CCTTTTCAAGAC,+,0.00)
mm_17982.1	chr2	37800924	37801124	-	1	NA	NA	NA	24775	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.015000	0.636816	
mm_73010.1	chr8	93811235	93811435	+	1	NA	NA	NA	497	NM_001113384	14681	Mm.251445	NM_010308	ENSMUSG00000031748	Gnao1	AW050213|Galphao|Gnao|alphaO	guanine nucleotide binding protein, alpha O	protein-coding	0.080000	0.661692	
mm_104316.1	chr11	93886016	93886216	-	1	NA	NA	NA	-91	NM_001346525	103537	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	0.100000	0.656716	
mm_97838.1	chr11	83065040	83065240	+	1	NA	NA	NA	28	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.010000	0.527363	-28(GCTTTAATGCAG,+,0.00)
mm_92295.1	chr10	73086618	73086818	-	1	NA	NA	NA	-13	NR_040646	327768	Mm.417745	NR_040646		A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0.015000	0.472637	
mm_135534.1	chr16	49769708	49769908	-	1	NA	NA	NA	70514	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.010000	0.422886	-90(GTCTTGATAAGG,-,0.00)
mm_153529.1	chr19	41847994	41848194	-	1	NA	NA	NA	38	NM_177603	212398	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	0.140000	0.721393	
mm_28743.1	chr3	95738184	95738384	-	1	NA	NA	NA	1285	NM_007899	13601	Mm.3433	NM_007899	ENSMUSG00000028108	Ecm1	AI663821|p85	extracellular matrix protein 1	protein-coding	0.030000	0.562189	
mm_73834.1	chr8	117460704	117460904	+	1	NA	NA	NA	1539	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.015000	0.467662	
mm_111096.1	chr12	80643728	80643928	-	1	NA	NA	NA	283	NM_007951	13877	Mm.246551	NM_007951	ENSMUSG00000021131	Erh	Mer|Prei1	enhancer of rudimentary homolog (Drosophila)	protein-coding	0.115000	0.616915	
mm_140534.1	chr17	6755925	6756125	-	1	NA	NA	NA	26755	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.020000	0.537313	
mm_27267.1	chr3	39009604	39009804	-	1	NA	NA	NA	122764	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.035000	0.542289	
mm_48006.1	chr5	136161338	136161538	-	1	NA	NA	NA	9218	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.025000	0.626866	
mm_80576.1	chr9	84037754	84037954	+	1	NA	NA	NA	89073	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.005000	0.472637	
mm_801.1	chr1	45348516	45348716	+	1	NA	NA	NA	37078	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.010000	0.373134	
mm_73892.1	chr8	119418885	119419085	+	1	NA	NA	NA	-18177	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.010000	0.616915	
mm_156973.1	chrX	6083319	6083519	-	1	NA	NA	NA	1	NM_001166433	102991	Mm.199793	NM_001033211	ENSMUSG00000073294	AU022751	AU023811	expressed sequence AU022751	protein-coding	0.035000	0.552239	
mm_75770.1	chr8	69984897	69985097	-	1	NA	NA	NA	-10614	NM_001113346	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.005000	0.353234	
mm_87716.1	chr10	60105885	60106085	+	1	NA	NA	NA	-272	NM_052994	94214	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.020000	0.552239	-87(CCTTTTAGACAC,+,0.00)
mm_83634.1	chr9	49486078	49486278	-	1	NA	NA	NA	47	NM_172770	235330	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	0.055000	0.616915	
mm_78995.1	chr9	45403161	45403361	+	1	NA	NA	NA	123	NM_052823	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.005000	0.601990	
mm_115107.1	chr13	103356306	103356506	+	1	NA	NA	NA	-21914	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.005000	0.383085	
mm_113786.1	chr13	45516902	45517102	+	1	NA	NA	NA	9558	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.045000	0.582090	
mm_35205.1	chr4	19526487	19526687	-	1	NA	NA	NA	43517	NM_027769	70568	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	0.005000	0.363184	
mm_27871.1	chr3	79162748	79162948	-	1	NA	NA	NA	-16973	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.447761	
mm_20443.1	chr2	129309074	129309274	-	1	NA	NA	NA	798	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.005000	0.427861	
mm_32665.1	chr4	115331927	115332127	+	1	NA	NA	NA	32981	NM_177406	277753	Mm.276106	NM_177406	ENSMUSG00000066071	Cyp4a12a	BC025936|Cyp4a12	cytochrome P450, family 4, subfamily a, polypeptide 12a	protein-coding	0.000000	0.452736	
mm_139246.1	chr17	47734119	47734319	+	1	NA	NA	NA	-2818	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.020000	0.537313	
mm_95577.1	chr11	52407328	52407528	+	1	NA	NA	NA	11000	NM_153117	213673	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.025000	0.532338	
mm_92487.1	chr10	78298041	78298241	-	1	NA	NA	NA	42066	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.025000	0.601990	
mm_123893.1	chr14	72980359	72980559	-	1	NA	NA	NA	-45144	NR_027860	668489	Mm.158324	NR_027860		Gm9199	EG668489	glycine cleavage system protein H (aminomethyl carrier) pseudogene	pseudo	0.045000	0.582090	
mm_94442.1	chr11	6320497	6320697	+	1	NA	NA	NA	28039	NM_001252288	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.010000	0.467662	
mm_120677.1	chr14	70573745	70573945	+	1	NA	NA	NA	-4002	NM_153136	213484	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	0.005000	0.398010	
mm_155314.1	chrX	61785267	61785467	+	1	NA	NA	NA	75751	NM_001018087	434784	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Sirh7	leucine zipper, down-regulated in cancer 1	protein-coding	0.020000	0.393035	-31(TGGTATAAAAGA,-,0.00)
mm_16591.1	chr2	4593453	4593653	-	1	NA	NA	NA	33799	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.020000	0.567164	
mm_137454.1	chr17	26560630	26560830	+	1	NA	NA	NA	-782	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.010000	0.472637	
mm_139612.1	chr17	57358603	57358803	+	1	NA	NA	NA	17	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.527363	-24(AGCTTTTAAAGG,-,0.00),-23(GCTTTTAAAGGG,+,0.00),-23(GCTTTTAAAGGG,-,0.00),-22(CTTTTAAAGGGA,+,0.00)
mm_36351.1	chr4	73950724	73950924	-	1	NA	NA	NA	22	NM_027981	71886	Mm.158769	NM_027104	ENSMUSG00000028396	2310002L09Rik	2310003M01Rik|AV083437	RIKEN cDNA 2310002L09 gene	protein-coding	0.005000	0.437811	
mm_105028.1	chr11	100476631	100476831	-	1	NA	NA	NA	1749	NR_130343	102465671		NR_130343	ENSMUSG00000104854	Mir7116	mmu-mir-7116	microRNA 7116	ncRNA	0.010000	0.398010	
mm_130948.1	chr15	103253399	103253599	-	1	NA	NA	NA	-347	NM_001302343	18022	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.000000	0.427861	
mm_146736.1	chr18	15402656	15402856	-	1	NA	NA	NA	243	NM_001308647	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.005000	0.601990	
mm_28284.1	chr3	88951026	88951226	-	1	NA	NA	NA	-844	NM_001164533	65111	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0.055000	0.651741	
mm_3114.1	chr1	134575260	134575460	+	1	NA	NA	NA	15182	NM_152895	75605	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0.010000	0.358209	61(GCTTTTCAAGTG,+,0.00)
mm_70518.1	chr8	12949278	12949478	+	1	NA	NA	NA	-40	NM_001159486	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.020000	0.512438	
mm_92421.1	chr10	77029447	77029647	-	1	NA	NA	NA	-3192	NM_001199271	20509	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.015000	0.552239	-34(GGTTCTATAAGG,-,0.00)
mm_147073.1	chr18	35342934	35343134	-	1	NA	NA	NA	-128010	NM_178005	107065	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0.010000	0.532338	
mm_75209.1	chr8	39605222	39605422	-	1	NA	NA	NA	37356	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.273632	-84(AACTTTATAAGA,-,0.00)
mm_32290.1	chr4	103114369	103114569	+	1	NA	NA	NA	79	NM_001286222	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.105000	0.716418	
mm_128963.1	chr15	74831997	74832197	-	1	NA	NA	NA	9546	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.010000	0.437811	
mm_82398.1	chr9	14740594	14740794	-	1	NA	NA	NA	39	NM_177905	330890	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	0.050000	0.567164	
mm_31432.1	chr4	48124850	48125050	+	1	NA	NA	NA	31	NM_026343	67727	Mm.171334	NM_026343	ENSMUSG00000061455	Stx17	4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351	syntaxin 17	protein-coding	0.120000	0.746269	
mm_25635.1	chr3	120356492	120356692	+	1	NA	NA	NA	530140	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA	0.010000	0.457711	
mm_135332.1	chr16	38828650	38828850	-	1	NA	NA	NA	-1	NM_029042	74663	Mm.50263	NM_029042	ENSMUSG00000022798	4930435E12Rik	TSCPA	RIKEN cDNA 4930435E12 gene	protein-coding	0.010000	0.522388	
mm_12137.1	chr2	61711700	61711900	+	1	NA	NA	NA	106	NM_021526	59029	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0.080000	0.597015	
mm_73032.1	chr8	94179981	94180181	+	1	NA	NA	NA	992	NM_013602	17748	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.035000	0.547264	
mm_64658.1	chr7	4164157	4164357	-	1	NA	NA	NA	442	NM_021454	58804	Mm.34268	NM_021454	ENSMUSG00000063838	Cdc42ep5	1700027J19Rik|2010007O02Rik|Borg3|C85526|CEP5	CDC42 effector protein (Rho GTPase binding) 5	protein-coding	0.025000	0.582090	
mm_52787.1	chr6	121257154	121257354	+	1	NA	NA	NA	11348	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.000000	0.427861	
mm_105928.1	chr11	115116553	115116753	-	1	NA	NA	NA	17339	NM_001347648	246746	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.015000	0.373134	
mm_103978.1	chr11	84823582	84823782	-	1	NA	NA	NA	-4167	NM_145433	217038	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik|ENSMUSG00000054212	mitochondrial rRNA methyltransferase 1	protein-coding	0.020000	0.587065	
mm_50453.1	chr6	48906062	48906262	+	1	NA	NA	NA	1176	NM_001161621	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.040000	0.562189	
mm_130156.1	chr15	91191419	91191619	-	1	NA	NA	NA	288	NM_011994	26874	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.025000	0.517413	
mm_92654.1	chr10	80399458	80399658	-	1	NA	NA	NA	-27	NM_001306143	17192	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.105000	0.681592	
mm_159644.1	chr4	144190392	144190592	+	1	NA	NA	NA	-225	NM_198661	381570	Mm.332028	NM_198661	ENSMUSG00000066030	Oog2	C85069	oogenesin 2	protein-coding	0.000000	0.407960	
mm_49234.1	chr6	17281098	17281298	+	1	NA	NA	NA	13	NM_016900	12390	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	0.110000	0.771144	
mm_151996.1	chr19	5893984	5894184	-	1	NA	NA	NA	23	NM_198634	332359	Mm.329642	NM_198634	ENSMUSG00000044390	Tigd3	-	tigger transposable element derived 3	protein-coding	0.110000	0.716418	
mm_133068.1	chr16	58670212	58670412	+	1	NA	NA	NA	104	NM_007757	12892	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0.065000	0.636816	
mm_50823.1	chr6	54595105	54595305	+	1	NA	NA	NA	94	NM_001164361	231999	Mm.35416	NM_001001335	ENSMUSG00000005225	Plekha8	6330400G01|AA517676|BC052360|Fapp-2|Fapp2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	protein-coding	0.145000	0.761194	
mm_135989.1	chr16	75092886	75093086	-	1	NA	NA	NA	493075	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.025000	0.497512	
mm_140128.1	chr17	79615120	79615320	+	1	NA	NA	NA	320	NM_201361	381110	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.100000	0.736318	
mm_5370.1	chr1	29485837	29486037	-	1	NA	NA	NA	64449	NR_105760	102465174		NR_105760	ENSMUSG00000099257	Mir6342	Gm27268|mmu-mir-6342	microRNA 6342	ncRNA	0.020000	0.402985	
mm_92736.1	chr10	80917973	80918173	-	1	NA	NA	NA	172	NM_010722	16907	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0.110000	0.681592	
mm_152663.1	chr19	14083338	14083538	-	1	NA	NA	NA	164416	NM_001011850	258151	Mm.377361	NM_001011850	ENSMUSG00000062314	Olfr1505	MOR211-4P	olfactory receptor 1505	protein-coding	0.020000	0.512438	-34(GCCTATATAAGC,-,0.00)
mm_9505.1	chr1	173735121	173735321	-	1	NA	NA	NA	6588	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.015000	0.522388	
mm_155578.1	chrX	78070221	78070421	+	1	NA	NA	NA	21053	NM_008754	18249	Mm.430771	NM_008754	ENSMUSG00000067684	Obp1a	OBP-1a|OBP5	odorant binding protein IA	protein-coding	0.000000	0.323383	
mm_92022.1	chr10	62422304	62422504	-	1	NA	NA	NA	53	NM_145419	216019	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	0.050000	0.537313	
mm_149792.1	chr19	23141123	23141323	+	1	NA	NA	NA	-3	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.085000	0.636816	
mm_38902.1	chr4	149909587	149909787	-	1	NA	NA	NA	45319	NM_029035	74646	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	0.040000	0.512438	
mm_122616.1	chr14	51105320	51105520	-	1	NA	NA	NA	9420	NM_201239	58809	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	0.015000	0.452736	
mm_112506.1	chr13	8885544	8885744	+	1	NA	NA	NA	38	NM_145360	319554	Mm.29847	NM_145360	ENSMUSG00000058258	Idi1	4832416K17Rik	isopentenyl-diphosphate delta isomerase	protein-coding	0.070000	0.656716	
mm_139108.1	chr17	47325515	47325715	+	1	NA	NA	NA	-43272	NM_001146212	64657	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	0.015000	0.373134	15(GCCTTGAAAGGG,-,0.00)
mm_129320.1	chr15	77765673	77765873	-	1	NA	NA	NA	-10544	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.040000	0.621891	
mm_116363.1	chr13	40730656	40730856	-	1	NA	NA	NA	-299	NM_001122948	21418	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.095000	0.562189	
mm_76935.1	chr8	105939683	105939883	-	1	NA	NA	NA	-1391	NM_013640	19171	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0.045000	0.587065	
mm_13057.1	chr2	91114171	91114371	+	1	NA	NA	NA	-3873	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.015000	0.592040	
mm_39559.1	chr5	22908246	22908446	+	1	NA	NA	NA	-161462	NR_027362	330052	Mm.459265	NR_027362	ENSMUSG00000105076	A930003O13Rik	-	RIKEN cDNA A930003O13 gene	ncRNA	0.005000	0.402985	
mm_88958.1	chr10	81392951	81393151	+	1	NA	NA	NA	-13	NM_001099917	72273	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.035000	0.646766	
mm_126113.1	chr15	78260598	78260798	+	1	NA	NA	NA	15887	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.025000	0.557214	
mm_123246.1	chr14	60425228	60425428	-	1	NA	NA	NA	47042	NM_001164705	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.005000	0.402985	
mm_91802.1	chr10	53751029	53751229	-	1	NA	NA	NA	-220	NM_001081428	75906	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0.180000	0.805970	
mm_45611.1	chr5	75835149	75835349	-	1	NA	NA	NA	143179	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.030000	0.477612	
mm_168080.1	chr10	11609143	11609343	+	1	NA	NA	NA	19	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.075000	0.527363	
mm_41888.1	chr5	105495443	105495643	+	1	NA	NA	NA	-23928	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.035000	0.482587	-33(CACCTTAAAAGA,-,0.00)
mm_65751.1	chr7	28561007	28561207	-	1	NA	NA	NA	-123	NR_106016	102466795		NR_106016	ENSMUSG00000098558	Mir7049	Gm27277|mmu-mir-7049	microRNA 7049	ncRNA	0.015000	0.547264	
mm_73835.1	chr8	117460769	117460969	+	1	NA	NA	NA	1604	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.020000	0.422886	
mm_7550.1	chr1	124564767	124564967	-	1	NA	NA	NA	-519308	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.492537	
mm_20199.1	chr2	124711001	124711201	-	1	NA	NA	NA	57520	NM_199239	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.020000	0.477612	
mm_165682.1	chr3	90692798	90692998	-	1	NA	NA	NA	2823	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.000000	0.467662	
mm_173105.1	chrX	15421437	15421637	+	1	NA	NA	NA	-310048	NR_033171	67395	Mm.50369	NM_026128	ENSMUSG00000045217	Ppp1r2-ps9	4930403L05Rik	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 9	pseudo	0.020000	0.482587	
mm_102558.1	chr11	61453762	61453962	-	1	NA	NA	NA	130	NM_009548	22671	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	0.035000	0.572139	
mm_124190.1	chr14	98068504	98068704	-	1	NA	NA	NA	101161	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.005000	0.437811	
mm_48295.1	chr5	138227299	138227499	-	1	NA	NA	NA	1495	NM_001013773	381680	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0.010000	0.388060	
mm_34620.1	chr4	150563409	150563609	+	1	NA	NA	NA	88665	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.010000	0.517413	
mm_116493.1	chr13	44869566	44869766	-	1	NA	NA	NA	132430	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.075000	0.547264	-80(AACTTTAAATGG,-,0.00),67(CCCCAGAAAAGG,-,0.00)
mm_2634.1	chr1	121486855	121487055	+	1	NA	NA	NA	41510	NM_010483	15564	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	0.015000	0.507463	
mm_171724.1	chr4	86856708	86856908	-	1	NA	NA	NA	559	NM_009096	20104	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	0.055000	0.562189	-68(CCCCTTTAAAAC,-,0.00),-66(CCTTTAAAACTG,+,0.00)
mm_98284.1	chr11	89065720	89065920	+	1	NA	NA	NA	5069	NR_110336	414094	Mm.124287	NM_001001497		Dgkeos	A930013B10Rik	diacylglycerol kinase, epsilon, opposite strand	ncRNA	0.010000	0.462687	
mm_88205.1	chr10	70181987	70182187	+	1	NA	NA	NA	-22577	NM_001304739	69563	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Mln	myoregulin	protein-coding	0.010000	0.512438	
mm_28975.1	chr3	101096968	101097168	-	1	NA	NA	NA	13098	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding	0.000000	0.313433	-70(TGGTTTATAAGA,-,0.00)
mm_60734.1	chr7	45434854	45435054	+	1	NA	NA	NA	115	NM_030678	14936	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0.070000	0.616915	
mm_92875.1	chr10	82492444	82492644	-	1	NA	NA	NA	74	NM_001255990	432480	Mm.280394	NM_001255990	ENSMUSG00000094186	Gm1553	Lcrn	predicted gene 1553	protein-coding	0.010000	0.338308	
mm_41978.1	chr5	107497639	107497839	+	1	NA	NA	NA	-6	NM_001007574	231570	Mm.261891	NM_001007574	ENSMUSG00000044060	A830010M20Rik	AI849226|Kiaa1107|mKIAA1107	RIKEN cDNA A830010M20 gene	protein-coding	0.020000	0.482587	
mm_54966.1	chr6	48725482	48725682	-	1	NA	NA	NA	6961	NM_146167	231932	Mm.30479	NM_146167	ENSMUSG00000043931	Gimap7	IAN7|Ian3	GTPase, IMAP family member 7	protein-coding	0.000000	0.502488	
mm_160562.1	chr9	53946775	53946975	-	1	NA	NA	NA	28426	NM_177769	270162	Mm.259791	NM_177769	ENSMUSG00000041986	Elmod1	4831417L10|AI428506|AI834991	ELMO/CED-12 domain containing 1	protein-coding	0.020000	0.487562	
mm_133724.1	chr16	93776616	93776816	+	1	NA	NA	NA	-55405	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.015000	0.542289	
mm_13769.1	chr2	118598150	118598350	+	1	NA	NA	NA	39	NM_009773	12236	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	0.090000	0.572139	
mm_83168.1	chr9	40531015	40531215	-	1	NA	NA	NA	-75351	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.045000	0.611940	
mm_63675.1	chr7	130525655	130525855	+	1	NA	NA	NA	-5386	NM_001271343	11907	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0.015000	0.477612	
mm_63795.1	chr7	132931018	132931218	+	1	NA	NA	NA	-18504	NM_207302	360216	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0.140000	0.686567	
mm_45553.1	chr5	73156280	73156480	-	1	NA	NA	NA	100238	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.015000	0.552239	
mm_53565.1	chr6	137252277	137252477	+	1	NA	NA	NA	78	NM_011216	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.060000	0.631841	
mm_45304.1	chr5	65421486	65421686	-	1	NA	NA	NA	14256	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.005000	0.442786	-55(CTTTATAGAGCA,+,0.00)
mm_70226.1	chr7	145283828	145284028	-	1	NA	NA	NA	83	NR_132644	233979	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.050000	0.621891	
mm_75483.1	chr8	48668621	48668821	-	1	NA	NA	NA	5969	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.010000	0.363184	
mm_91882.1	chr10	59800169	59800369	-	1	NA	NA	NA	-79322	NM_019965	56709	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.025000	0.477612	
mm_60820.1	chr7	45705240	45705440	+	1	NA	NA	NA	93	NM_016974	13170	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.035000	0.542289	
mm_145181.1	chr18	48045239	48045439	+	1	NA	NA	NA	4	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.005000	0.452736	
mm_85272.1	chr9	99436535	99436735	-	1	NA	NA	NA	77	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.170000	0.830846	
mm_127071.1	chr15	97374103	97374303	+	1	NA	NA	NA	-126916	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.005000	0.417910	
mm_136829.1	chr17	12615187	12615387	+	1	NA	NA	NA	31098	NM_013667	20518	Mm.17322	NM_013667	ENSMUSG00000040966	Slc22a2	Oct2|Orct2	solute carrier family 22 (organic cation transporter), member 2	protein-coding	0.020000	0.452736	
mm_173208.1	chrX	71196988	71197188	+	1	NA	NA	NA	-13679	NM_001164190	17772	Mm.274981	NM_019926	ENSMUSG00000031337	Mtm1	AF073996|Mtm|mKIAA4176	X-linked myotubular myopathy gene 1	protein-coding	0.015000	0.522388	
mm_47260.1	chr5	121821427	121821627	-	1	NA	NA	NA	-2254	NR_105998	102465624		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0.005000	0.398010	
mm_6752.1	chr1	84036593	84036793	-	1	NA	NA	NA	182268	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.373134	-42(CTCCTTTAAAAG,-,0.00),-41(TCCTTTAAAAGG,-,0.00),-40(CCTTTAAAAGGT,+,0.00)
mm_163445.1	chr12	86883976	86884176	-	1	NA	NA	NA	738	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.080000	0.711443	
mm_80273.1	chr9	72985317	72985517	+	1	NA	NA	NA	-41	NM_001198789	546143	Mm.260946	NM_001198789	ENSMUSG00000086158	Ccpg1os	EG546143|Gm5918	cell cycle progression 1, opposite strand	protein-coding	0.095000	0.636816	
mm_86076.1	chr9	114779158	114779358	-	1	NA	NA	NA	2735	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.000000	0.452736	72(GTTTTTAAGGGA,+,0.00)
mm_43436.1	chr5	136089744	136089944	+	1	NA	NA	NA	5928	NM_001039103	54153	Mm.290655	NM_133914	ENSMUSG00000004952	Rasa4	AA793972|AW112107|BB079060|CAPRI|GAPL	RAS p21 protein activator 4	protein-coding	0.005000	0.452736	
mm_83109.1	chr9	40346216	40346416	-	1	NA	NA	NA	12844	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.030000	0.557214	
mm_164246.1	chr15	95802916	95803116	+	1	NA	NA	NA	12173	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.005000	0.567164	
mm_28784.1	chr3	95995550	95995750	-	1	NA	NA	NA	189	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.080000	0.656716	
mm_19214.1	chr2	84637589	84637789	-	1	NA	NA	NA	12821	NM_001085453	12388	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.015000	0.398010	
mm_5867.1	chr1	53776589	53776789	-	1	NA	NA	NA	8526	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.015000	0.422886	
mm_124526.1	chr14	122233454	122233654	-	1	NA	NA	NA	84	NR_015532	68245	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.035000	0.597015	
mm_119955.1	chr14	55062840	55063040	+	1	NA	NA	NA	-10151	NR_004444	432855	Mm.490799	NR_004444	ENSMUSG00000093452	Zfhx2os	Zfhx2as	zinc finger homeobox 2, opposite strand	ncRNA	0.040000	0.611940	
mm_77400.1	chr8	120489341	120489541	-	1	NA	NA	NA	575	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.115000	0.711443	
mm_12599.1	chr2	74674977	74675177	+	1	NA	NA	NA	64	NM_008274	15432	Mm.57124	NM_008274	ENSMUSG00000001823	Hoxd12	Hox-4.7|Hox-5.6	homeobox D12	protein-coding	0.035000	0.507463	
mm_105213.1	chr11	102163517	102163717	-	1	NA	NA	NA	-7210	NM_029649	76547	Mm.46529	NM_029649	ENSMUSG00000020921	Tmem101	2610511E22Rik	transmembrane protein 101	protein-coding	0.000000	0.298507	
mm_144217.1	chr18	9745461	9745661	+	1	NA	NA	NA	37913	NM_130449	140792	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.000000	0.343284	
mm_155263.1	chrX	58030529	58030729	+	1	NA	NA	NA	1	NM_009575	22773	Mm.255890	NM_009575	ENSMUSG00000067860	Zic3	Bn|Ka	zinc finger protein of the cerebellum 3	protein-coding	0.050000	0.611940	
mm_40574.1	chr5	63840140	63840340	+	1	NA	NA	NA	27745	NM_029554	76261	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.025000	0.497512	
mm_151158.1	chr19	53185721	53185921	+	1	NA	NA	NA	41824	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.015000	0.472637	
mm_98132.1	chr11	87471498	87471698	+	1	NA	NA	NA	44007	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.025000	0.402985	
mm_98048.1	chr11	85739787	85739987	+	1	NA	NA	NA	-20143	NR_045875	71489	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.020000	0.537313	
mm_143139.1	chr17	57218782	57218982	-	1	NA	NA	NA	-1654	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.030000	0.532338	
mm_75766.1	chr8	69974226	69974426	-	1	NA	NA	NA	57	NM_001113346	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.140000	0.756219	-33(GCCTTTAAGAGC,-,0.00),-32(CCTTTAAGAGCT,+,0.00)
mm_65801.1	chr7	28949575	28949775	-	1	NA	NA	NA	12605	NM_021895	60595	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.005000	0.497512	
mm_168335.1	chr11	118308790	118308990	+	1	NA	NA	NA	-18646	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.005000	0.482587	33(CCTTTTATAAGT,+,0.00)
mm_99778.1	chr11	107335393	107335593	+	1	NA	NA	NA	135227	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.030000	0.388060	
mm_102733.1	chr11	67249163	67249363	-	1	NA	NA	NA	11451	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.015000	0.422886	
mm_135430.1	chr16	45382683	45382883	-	1	NA	NA	NA	26270	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.005000	0.398010	
mm_41479.1	chr5	91962832	91963032	+	1	NA	NA	NA	50	NR_028429	381650	Mm.159453	NR_028429	ENSMUSG00000102644	Thap6	4930534K21Rik|AI448650	THAP domain containing 6	pseudo	0.065000	0.587065	
mm_126992.1	chr15	94629006	94629206	+	1	NA	NA	NA	-79	NM_178789	320709	Mm.74873	NM_178789	ENSMUSG00000063296	Tmem117	B930062P21Rik	transmembrane protein 117	protein-coding	0.165000	0.830846	
mm_105625.1	chr11	106877798	106877998	-	1	NA	NA	NA	42817	NM_025481	66313	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	0.005000	0.398010	
mm_95839.1	chr11	57011738	57011938	+	1	NA	NA	NA	220	NM_008165	14799	Mm.4920	NM_008165	ENSMUSG00000020524	Gria1	2900051M01Rik|Glr-1|Glr1|GluA1|GluR-A|GluRA|Glur-1|Glur1|HIPA1|gluR-K1	glutamate receptor, ionotropic, AMPA1 (alpha 1)	protein-coding	0.035000	0.547264	
mm_168399.1	chr11	29438849	29439049	-	1	NA	NA	NA	64777	NM_176841	108686	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0.045000	0.636816	
mm_131913.1	chr16	23307661	23307861	+	1	NA	NA	NA	17291	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.005000	0.537313	
mm_144102.1	chr18	3507855	3508055	+	1	NA	NA	NA	-2	NM_026505	68010	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	0.125000	0.706468	
mm_46897.1	chr5	114091211	114091411	-	1	NA	NA	NA	69	NM_026805	68666	Mm.63584	NM_026805	ENSMUSG00000042078	Svop	1110030H18Rik|AI415691|msvop	SV2 related protein	protein-coding	0.070000	0.696517	
mm_170681.1	chr2	126709467	126709667	-	1	NA	NA	NA	2239	NM_019729	84092	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	0.045000	0.522388	
mm_79537.1	chr9	57827190	57827390	+	1	NA	NA	NA	6944	NM_019689	56380	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0.035000	0.532338	
mm_119822.1	chr14	54232457	54232657	+	1	NA	NA	NA	21372	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.393035	
mm_19338.1	chr2	90580469	90580669	-	1	NA	NA	NA	78	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.125000	0.751244	
mm_82965.1	chr9	35648101	35648301	-	1	NA	NA	NA	1	NM_001167592	100312956	Mm.475850	NM_001167592	ENSMUSG00000094995	Pate3	Gm17365|Pate-dj	prostate and testis expressed 3	protein-coding	0.005000	0.472637	
mm_128359.1	chr15	40014533	40014733	-	1	NA	NA	NA	51984	NR_045719	105976	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0.025000	0.462687	
mm_71585.1	chr8	54954715	54954915	+	1	NA	NA	NA	87	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.025000	0.497512	
mm_98970.1	chr11	98685416	98685616	+	1	NA	NA	NA	2962	NM_009439	22123	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0.050000	0.557214	
mm_142907.1	chr17	52348550	52348750	-	1	NA	NA	NA	-254059	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.015000	0.402985	
mm_115759.1	chr13	19193405	19193605	-	1	NA	NA	NA	202308	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.507463	
mm_118785.1	chr14	24100190	24100390	+	1	NA	NA	NA	11413	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.000000	0.373134	
mm_126537.1	chr15	82022689	82022889	+	1	NA	NA	NA	6420	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.025000	0.577114	
mm_132083.1	chr16	30259705	30259905	+	1	NA	NA	NA	7727	NM_027904	71756	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.035000	0.547264	
mm_38924.1	chr4	150009439	150009639	-	1	NA	NA	NA	-516	NM_173371	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.010000	0.492537	
mm_61777.1	chr7	83641659	83641859	+	1	NA	NA	NA	9742	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.010000	0.467662	
mm_95627.1	chr11	53586737	53586937	+	1	NA	NA	NA	19468	NM_001290806	16568	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	0.005000	0.393035	
mm_34891.1	chr4	155609431	155609631	+	1	NA	NA	NA	8115	NM_177186	320541	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	0.005000	0.477612	
mm_125702.1	chr15	67336406	67336606	+	1	NA	NA	NA	109737	NR_045140	69334	Mm.63770	NR_045140	ENSMUSG00000102069	1700012I11Rik	-	RIKEN cDNA 1700012I11 gene	ncRNA	0.005000	0.452736	
mm_41370.1	chr5	90546189	90546389	+	1	NA	NA	NA	-14920	NM_001252661	622307	Mm.389654	NM_001252661	ENSMUSG00000070690	5830473C10Rik	Arg|Gm17754	RIKEN cDNA 5830473C10 gene	protein-coding	0.000000	0.283582	-83(GACTTTTAAAAA,-,0.00)
mm_33700.1	chr4	133622628	133622828	+	1	NA	NA	NA	10701	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.015000	0.447761	
mm_67524.1	chr7	80947671	80947871	-	1	NA	NA	NA	-221	NM_019951	56529	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	0.095000	0.646766	
mm_7665.1	chr1	128447178	128447378	-	1	NA	NA	NA	-29862	NM_145507	226414	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	0.020000	0.507463	
mm_152443.1	chr19	10771983	10772183	-	1	NA	NA	NA	31136	NR_027805	403202	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0.025000	0.497512	
mm_58800.1	chr7	16295036	16295236	+	1	NA	NA	NA	-8341	NM_001136471	243846	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0.070000	0.626866	
mm_75728.1	chr8	69184109	69184309	-	1	NA	NA	NA	-24837	NM_001013379	234358	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	0.080000	0.696517	
mm_139592.1	chr17	57225935	57226135	+	1	NA	NA	NA	2101	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.015000	0.557214	
mm_98895.1	chr11	97884487	97884687	+	1	NA	NA	NA	-433	NM_001081435	72973	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	0.025000	0.512438	-32(GGCCCTTAAAAG,-,0.00),-31(GCCCTTAAAAGC,-,0.00),-30(CCCTTAAAAGCC,+,0.00),-29(CCTTAAAAGCCC,+,0.00)
mm_117280.1	chr13	65122117	65122317	-	1	NA	NA	NA	-9235	NM_133680	66631	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	0.000000	0.427861	
mm_25249.1	chr3	104220780	104220980	+	1	NA	NA	NA	-474	NM_001159354	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	0.050000	0.592040	
mm_135204.1	chr16	36561656	36561856	-	1	NA	NA	NA	378	NM_013803	12374	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.070000	0.651741	
mm_160184.1	chr7	48027688	48027888	-	1	NA	NA	NA	-191	NM_207540	404242	Mm.354955	NM_207540	ENSMUSG00000070552	Mrgprx1	MrgC11|Mrgprc11	MAS-related GPR, member X1	protein-coding	0.005000	0.398010	
mm_123571.1	chr14	66910985	66911185	-	1	NA	NA	NA	-123	NM_175498	239157	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	0.090000	0.721393	
mm_19119.1	chr2	80038803	80039003	-	1	NA	NA	NA	90068	NM_016744	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.010000	0.477612	-33(CTGTTTTAAAGA,-,0.00)
mm_58444.1	chr7	3298943	3299143	+	1	NA	NA	NA	-4489	NM_001291434	18752	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	0.015000	0.497512	
mm_131860.1	chr16	23107296	23107496	+	1	NA	NA	NA	-1	NM_001347179	13682	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0.145000	0.746269	
mm_111903.1	chr12	108765690	108765890	-	1	NA	NA	NA	-27521	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.020000	0.542289	
mm_125304.1	chr15	37233284	37233484	+	1	NA	NA	NA	348	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	0.055000	0.557214	
mm_9021.1	chr1	166238335	166238535	-	1	NA	NA	NA	309	NM_175296	98558	Mm.26189	NM_175296	ENSMUSG00000040629	Mael	4933405K18Rik|AU019877	maelstrom spermatogenic transposon silencer	protein-coding	0.050000	0.661692	
mm_22016.1	chr2	167847729	167847929	-	1	NA	NA	NA	-84498	NM_011201	19246	Mm.277916	NM_011201	ENSMUSG00000027540	Ptpn1	PTP-1B|PTP-HA2|PTP1B	protein tyrosine phosphatase, non-receptor type 1	protein-coding	0.015000	0.462687	
mm_90850.1	chr10	8762359	8762559	-	1	NA	NA	NA	123611	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.015000	0.452736	
mm_62243.1	chr7	98838903	98839103	+	1	NA	NA	NA	158	NM_001285795	22411	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.135000	0.716418	
mm_24792.1	chr3	95545365	95545565	+	1	NA	NA	NA	-14212	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.025000	0.517413	
mm_64000.1	chr7	140137476	140137676	+	1	NA	NA	NA	12	NM_199301	212508	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	0.080000	0.641791	
mm_56304.1	chr6	91796145	91796345	-	1	NA	NA	NA	11148	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.025000	0.651741	
mm_10130.1	chr2	3780826	3781026	+	1	NA	NA	NA	67468	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.005000	0.308458	
mm_47804.1	chr5	132543099	132543299	-	1	NA	NA	NA	-856	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.150000	0.815920	
mm_102128.1	chr11	53430299	53430499	-	1	NA	NA	NA	432	NM_025352	22272	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	0.055000	0.522388	
mm_34935.1	chr4	155841005	155841205	+	1	NA	NA	NA	1425	NM_024263	74761	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	0.120000	0.656716	
mm_94098.1	chr10	128551658	128551858	-	1	NA	NA	NA	-2590	NM_018860	67945	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	0.005000	0.432836	-33(TCATATATAAGG,-,0.00)
mm_159215.1	chr2	125723921	125724121	-	1	NA	NA	NA	127	NM_199022	271849	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding	0.035000	0.572139	
mm_129505.1	chr15	78927164	78927364	-	1	NA	NA	NA	539	NM_008495	16852	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	0.020000	0.562189	
mm_60594.1	chr7	44496542	44496742	+	1	NA	NA	NA	54	NM_028169	75538	Mm.258841	NM_028169	ENSMUSG00000051113	Fam71e1	0610007G24Rik|1700021N13Rik|1700021P22Rik|GARI-L5	family with sequence similarity 71, member E1	protein-coding	0.080000	0.621891	
mm_59683.1	chr7	28437367	28437567	+	1	NA	NA	NA	20	NM_001290550	63986	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.015000	0.557214	
mm_76781.1	chr8	99386615	99386815	-	1	NA	NA	NA	29756	NM_001285913	12564	Mm.441131	NM_007667	ENSMUSG00000036510	Cdh8	AI851472|cad8	cadherin 8	protein-coding	0.000000	0.398010	
mm_29327.1	chr3	108081043	108081243	-	1	NA	NA	NA	4259	NM_001346665	109674	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0.030000	0.616915	-92(CTTTTAATAGGG,+,0.00)
mm_50756.1	chr6	53446037	53446237	+	1	NA	NA	NA	-127237	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.015000	0.457711	
mm_11235.1	chr2	29803555	29803755	+	1	NA	NA	NA	975	NM_011989	26569	Mm.330113	NM_011989	ENSMUSG00000059316	Slc27a4	BB144259|FATP4	solute carrier family 27 (fatty acid transporter), member 4	protein-coding	0.015000	0.582090	
mm_163930.1	chr14	47380292	47380492	+	1	NA	NA	NA	6532	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.005000	0.616915	
mm_85832.1	chr9	110462327	110462527	-	1	NA	NA	NA	14267	NM_177771	270201	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0.020000	0.562189	
mm_17775.1	chr2	32847137	32847337	-	1	NA	NA	NA	0	NM_001113569	20910	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0.195000	0.820896	
mm_140331.1	chr17	86754057	86754257	+	1	NA	NA	NA	293	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.050000	0.641791	
mm_21604.1	chr2	164238242	164238442	-	1	NA	NA	NA	-1	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.005000	0.422886	
mm_116817.1	chr13	54551823	54552023	-	1	NA	NA	NA	13459	NM_001252647	97820	Mm.24593	NM_133797	ENSMUSG00000025871	4833439L19Rik	4930558H15Rik|C81457|Kiaa1191|P33monox	RIKEN cDNA 4833439L19 gene	protein-coding	0.005000	0.427861	
mm_127123.1	chr15	98108373	98108573	+	1	NA	NA	NA	2	NM_001163487	18642	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	0.035000	0.621891	
mm_63320.1	chr7	126941281	126941481	+	1	NA	NA	NA	8200	NM_001347657	233879	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0.015000	0.562189	
mm_33893.1	chr4	136189401	136189601	+	1	NA	NA	NA	8719	NM_001305399	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.015000	0.437811	
mm_48457.1	chr5	140760443	140760643	-	1	NA	NA	NA	36416	NM_173405	231842	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.050000	0.597015	
mm_24246.1	chr3	89140122	89140322	+	1	NA	NA	NA	3599	NM_001099779	18770	Mm.383180	NM_013631	ENSMUSG00000041237	Pklr	Pk-1|Pk1|R-PK	pyruvate kinase liver and red blood cell	protein-coding	0.010000	0.422886	
mm_142022.1	chr17	35204575	35204775	-	1	NA	NA	NA	-118	NR_105940	102466990		NR_105940	ENSMUSG00000099006	Mir6974	Gm27658|mmu-mir-6974	microRNA 6974	ncRNA	0.030000	0.621891	
mm_52263.1	chr6	108257813	108258013	+	1	NA	NA	NA	44817	NM_010585	16438	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|ENSMUSG00000072853|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0.005000	0.283582	
mm_107781.1	chr12	61523806	61524006	+	1	NA	NA	NA	739	NM_001310586	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.050000	0.552239	
mm_146545.1	chr18	6135765	6135965	-	1	NA	NA	NA	233	NM_029277	75415	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0.105000	0.651741	
mm_73366.1	chr8	105604949	105605149	+	1	NA	NA	NA	-180	NM_001081241	75687	Mm.41261	NM_001081241	ENSMUSG00000038604	Fam65a	2310066E14Rik|AI837433	family with sequence similarity 65, member A	protein-coding	0.045000	0.587065	
mm_87253.1	chr10	41501201	41501401	+	1	NA	NA	NA	10862	NM_028430	73075	Mm.359762	NM_028430	ENSMUSG00000078451	Ppil6	2900084F20Rik	peptidylprolyl isomerase (cyclophilin)-like 6	protein-coding	0.000000	0.442786	
mm_156827.1	chrX	164200725	164200925	+	1	NA	NA	NA	57368	NM_009759	12169	Mm.504	NM_009759	ENSMUSG00000031377	Bmx	Etk|Etk/Bmx|Tyro8	BMX non-receptor tyrosine kinase	protein-coding	0.015000	0.457711	
mm_2260.1	chr1	91121641	91121841	+	1	NA	NA	NA	-23362	NM_001033408	329207	Mm.295940	NM_001033408	ENSMUSG00000070732	Rbm44	Gm817	RNA binding motif protein 44	protein-coding	0.005000	0.477612	14(TCCCCTTAAAGC,-,0.00)
mm_33120.1	chr4	124791314	124791514	+	1	NA	NA	NA	-11135	NM_008636	17764	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	0.000000	0.422886	
mm_119115.1	chr14	31019373	31019573	+	1	NA	NA	NA	335	NM_001081251	66923	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	0.160000	0.815920	
mm_5816.1	chr1	52660922	52661122	-	1	NA	NA	NA	30317	NM_001142647	227094	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	0.020000	0.457711	
mm_168365.1	chr1	116762902	116763102	-	1	NA	NA	NA	1077865	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.000000	0.358209	
mm_150252.1	chr19	34181349	34181549	+	1	NA	NA	NA	-10821	NM_029682	76630	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.010000	0.358209	-46(CTTTTTATAAGA,+,0.00)
mm_108467.1	chr12	83632167	83632367	+	1	NA	NA	NA	33	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.090000	0.641791	
mm_28239.1	chr3	88458932	88459132	-	1	NA	NA	NA	69	NM_001163490	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.055000	0.646766	
mm_62228.1	chr7	98531837	98532037	+	1	NA	NA	NA	37715	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.010000	0.567164	
mm_52957.1	chr6	123123228	123123428	+	1	NA	NA	NA	12	NM_001170333	26888	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0.005000	0.437811	
mm_103175.1	chr11	70459764	70459964	-	1	NA	NA	NA	120	NM_023158	66102	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.030000	0.512438	
mm_154979.1	chrX	37826946	37827146	+	1	NA	NA	NA	-9	NM_008955	19202	Mm.10105	NM_008955	ENSMUSG00000006200	Rhox6	AV213605|AW548842|Psx1	reproductive homeobox 6	protein-coding	0.060000	0.542289	
mm_136004.1	chr16	75683195	75683395	-	1	NA	NA	NA	83523	NR_027492	110920	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0.035000	0.517413	
mm_55794.1	chr6	82737192	82737392	-	1	NA	NA	NA	37162	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.025000	0.537313	
mm_15697.1	chr2	163693937	163694137	+	1	NA	NA	NA	0	NM_011106	18769	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.015000	0.527363	
mm_2161.1	chr1	88218342	88218542	+	1	NA	NA	NA	6483	NM_201645	394436	Mm.300095	NM_201645	ENSMUSG00000089960	Ugt1a1	Gnt1|UDPGT 1-1|UGT1A01|Udpgt-1a|UgtBr1	UDP glucuronosyltransferase 1 family, polypeptide A1	protein-coding	0.010000	0.388060	
mm_124852.1	chr15	9528378	9528578	+	1	NA	NA	NA	1398	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.005000	0.417910	
mm_172549.1	chr8	102148486	102148686	-	1	NA	NA	NA	636525	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.030000	0.487562	
mm_62902.1	chr7	116603953	116604153	+	1	NA	NA	NA	99684	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.005000	0.507463	-35(GCTTATAAAAGA,-,0.00)
mm_143489.1	chr17	71310861	71311061	-	1	NA	NA	NA	4	NM_145158	246707	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.105000	0.696517	
mm_90253.1	chr10	121739840	121740040	+	1	NA	NA	NA	3	NM_173022	270802	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	0.150000	0.751244	
mm_54881.1	chr6	42709908	42710108	-	1	NA	NA	NA	-16949	NM_029930	77574	Mm.24652	NM_029930	ENSMUSG00000036667	Tcaf1	2810407D09Rik|3321401G04Rik|A230020K05Rik|AI848529|Fam115a	TRPM8 channel-associated factor 1	protein-coding	0.040000	0.597015	
mm_32300.1	chr4	103119377	103119577	+	1	NA	NA	NA	87	NM_001039081	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.160000	0.791045	
mm_135504.1	chr16	46496899	46497099	-	1	NA	NA	NA	-32	NM_021497	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.170000	0.791045	
mm_38784.1	chr4	148084181	148084381	-	1	NA	NA	NA	3783	NM_009642	11610	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.015000	0.527363	
mm_160768.1	chr10	100366423	100366623	+	1	NA	NA	NA	24	NM_001166636	100043247	Mm.478257	NM_001166636	ENSMUSG00000096640	Gm4312	-	predicted gene 4312	protein-coding	0.015000	0.398010	
mm_71573.1	chr8	54527928	54528128	+	1	NA	NA	NA	1970	NM_029701	76687	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.010000	0.432836	
mm_167218.1	chr8	10705536	10705736	-	1	NA	NA	NA	176818	NR_040705	320014	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.005000	0.427861	26(TCTTATAAACAG,+,0.00)
mm_97812.1	chr11	82962563	82962763	+	1	NA	NA	NA	-1982	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.020000	0.492537	
mm_54085.1	chr6	15793225	15793425	-	1	NA	NA	NA	72664	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.015000	0.412935	
mm_144883.1	chr18	36795967	36796167	+	1	NA	NA	NA	2144	NM_025594	66492	Mm.251155	NM_025594	ENSMUSG00000001383	Zmat2	2610510D14Rik|2900082I05Rik	zinc finger, matrin type 2	protein-coding	0.005000	0.447761	81(GGGTTTTAAAGG,-,0.00)
mm_111640.1	chr12	102653209	102653409	-	1	NA	NA	NA	31711	NR_035457	100316812		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.015000	0.577114	
mm_116801.1	chr13	54055003	54055203	-	1	NA	NA	NA	-323	NM_001291801	13488	Mm.54161	NM_010076	ENSMUSG00000021478	Drd1	C030036C15Rik|Drd-1|Drd1a|Gpcr15	dopamine receptor D1	protein-coding	0.070000	0.711443	
mm_121900.1	chr14	21848800	21849000	-	1	NA	NA	NA	10	NM_026965	69156	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0.090000	0.701493	
mm_109690.1	chr12	113143429	113143629	+	1	NA	NA	NA	2924	NM_001347443	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.020000	0.572139	
mm_147433.1	chr18	46447609	46447809	-	1	NA	NA	NA	18107	NR_045438	72076	Mm.82766	NM_028086		Mospd4	2010013H21Rik	motile sperm domain containing 4	pseudo	0.020000	0.487562	33(AGCTTTAAAGAG,-,0.00),35(CTTTAAAGAGAG,+,0.00)
mm_27412.1	chr3	51396415	51396615	-	1	NA	NA	NA	32	NM_026358	67749	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	0.085000	0.701493	
mm_95309.1	chr11	46235366	46235566	+	1	NA	NA	NA	-91	NM_177075	320116	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	0.040000	0.552239	
mm_162471.1	chr1	132008466	132008666	+	1	NA	NA	NA	961	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.030000	0.462687	
mm_109456.1	chr12	111160122	111160322	+	1	NA	NA	NA	-6148	NM_001286122	22031	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.035000	0.492537	
mm_14691.1	chr2	140783596	140783796	+	1	NA	NA	NA	-112220	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.010000	0.412935	
mm_143528.1	chr17	73901912	73902112	-	1	NA	NA	NA	48184	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.005000	0.338308	
mm_21260.1	chr2	156392899	156393099	-	1	NA	NA	NA	-20	NR_024329	347740	Mm.324242	NR_024329		2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	0.080000	0.696517	
mm_62141.1	chr7	97101075	97101275	+	1	NA	NA	NA	19424	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.005000	0.353234	
mm_166745.1	chr6	124917797	124917997	-	1	NA	NA	NA	49	NM_026988	69202	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	0.160000	0.786070	-83(CGCCTTAAAAGC,-,0.00),-82(GCCTTAAAAGCG,+,0.00),-81(CCTTAAAAGCGG,+,0.00)
mm_139524.1	chr17	56628064	56628264	+	1	NA	NA	NA	21	NM_175350	106757	Mm.23401	NM_175350	ENSMUSG00000040828	Catsperd	4921529N20Rik|4933402B14Rik|619718|AW045609|Gm6095|Tmem146	catsper channel auxiliary subunit delta	protein-coding	0.035000	0.567164	
mm_146458.1	chr18	86601852	86602052	+	1	NA	NA	NA	-109158	NM_001302356	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.030000	0.542289	
mm_104472.1	chr11	95310100	95310300	-	1	NA	NA	NA	46	NM_001195004	217127	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	0.080000	0.631841	
mm_99032.1	chr11	98944342	98944542	+	1	NA	NA	NA	4731	NM_001177303	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.020000	0.467662	
mm_85890.1	chr9	111054910	111055110	-	1	NA	NA	NA	2234	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.010000	0.492537	
mm_17081.1	chr2	22941824	22942024	-	1	NA	NA	NA	46402	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.010000	0.383085	-80(GTCCTTTAAAGA,-,0.00),-79(TCCTTTAAAGAG,+,0.00),-79(TCCTTTAAAGAG,-,0.00),-78(CCTTTAAAGAGG,+,0.00),-77(CTTTAAAGAGGG,+,0.00)
mm_145096.1	chr18	43207616	43207816	+	1	NA	NA	NA	19	NM_178749	269019	Mm.150401	NM_178749	ENSMUSG00000039954	Stk32a	A930015B13Rik|YANK1	serine/threonine kinase 32A	protein-coding	0.070000	0.666667	
mm_4915.1	chr1	190596473	190596673	+	1	NA	NA	NA	315197	NM_178775	320119	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.005000	0.353234	
mm_116204.1	chr13	32701617	32701817	-	1	NA	NA	NA	80062	NM_001166030	238564	Mm.60041	NM_001166030	ENSMUSG00000044951	Mylk4	EG238564	myosin light chain kinase family, member 4	protein-coding	0.000000	0.407960	
mm_147315.1	chr18	41998875	41999075	-	1	NA	NA	NA	74	NM_001033426	332309	Mm.240520	NM_001033426	ENSMUSG00000073574	Grxcr2	Gm851	glutaredoxin, cysteine rich 2	protein-coding	0.035000	0.497512	
mm_74944.1	chr8	25847549	25847749	-	1	NA	NA	NA	45	NM_001080793	23808	Mm.27706	NM_011791	ENSMUSG00000031575	Ash2l	-	ash2 (absent, small, or homeotic)-like (Drosophila)	protein-coding	0.035000	0.562189	
mm_128601.1	chr15	58214743	58214943	-	1	NA	NA	NA	49	NM_026346	67731	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.080000	0.686567	
mm_44900.1	chr5	35525492	35525692	-	1	NA	NA	NA	34	NM_153107	242939	Mm.108557	NM_153107	ENSMUSG00000036596	Cpz	AV136066	carboxypeptidase Z	protein-coding	0.090000	0.706468	
mm_48572.1	chr5	143315278	143315478	-	1	NA	NA	NA	-18	NM_172726	231868	Mm.440105	NM_172726	ENSMUSG00000039244	E130309D02Rik	A630028N22	RIKEN cDNA E130309D02 gene	protein-coding	0.165000	0.771144	
mm_139703.1	chr17	57451502	57451702	+	1	NA	NA	NA	92916	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.010000	0.328358	
mm_170559.1	chr19	43890168	43890368	-	1	NA	NA	NA	-10500	NM_001306088	71972	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.045000	0.547264	
mm_64798.1	chr7	6685514	6685714	-	1	NA	NA	NA	10818	NM_011769	22776	Mm.89976	NM_011769	ENSMUSG00000002266	Zim1	-	zinc finger, imprinted 1	protein-coding	0.025000	0.562189	
mm_170613.1	chr19	58900483	58900683	-	1	NA	NA	NA	11176	NR_037247	100526480		NR_037247	ENSMUSG00000092813	Mir3086	mir-3086|mmu-mir-3086	microRNA 3086	ncRNA	0.030000	0.517413	-27(GAGTATTTAAGG,-,0.00)
mm_55579.1	chr6	71396863	71397063	-	1	NA	NA	NA	23536	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.010000	0.482587	-75(CTTTTTAGAGGA,+,0.00)
mm_102798.1	chr11	68853030	68853230	-	1	NA	NA	NA	1	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.095000	0.701493	
mm_137036.1	chr17	17890542	17890742	+	1	NA	NA	NA	2818	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.005000	0.383085	
mm_44568.1	chr5	24730517	24730717	-	1	NA	NA	NA	63	NM_001081441	269633	Mm.392539	NM_026621	ENSMUSG00000055235	Wdr86	2810046M22Rik|BC059069	WD repeat domain 86	protein-coding	0.050000	0.626866	
mm_84892.1	chr9	79793231	79793431	-	1	NA	NA	NA	99	NM_133718	69981	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	0.125000	0.731343	
mm_98850.1	chr11	97661777	97661977	+	1	NA	NA	NA	-1535	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.060000	0.661692	
mm_101277.1	chr11	21557194	21557394	-	1	NA	NA	NA	14640	NM_008618	17449	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	0.005000	0.298507	
mm_5451.1	chr1	36244230	36244430	-	1	NA	NA	NA	-28	NM_198899	320011	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	0.080000	0.641791	
mm_38227.1	chr4	136005140	136005340	-	1	NA	NA	NA	16409	NM_013736	27224	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	0.000000	0.328358	
mm_158160.1	chrX	103482464	103482664	-	1	NA	NA	NA	669	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.045000	0.457711	
mm_122775.1	chr14	54409373	54409573	-	1	NA	NA	NA	-1	NM_001253680	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.025000	0.502488	-36(GCGCTTTAAAAG,-,0.00),-35(CGCTTTAAAAGC,-,0.00),-34(GCTTTAAAAGCT,+,0.00)
mm_31424.1	chr4	48083501	48083701	+	1	NA	NA	NA	32355	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.005000	0.442786	
mm_19978.1	chr2	118373263	118373463	-	1	NA	NA	NA	56	NM_201367	381413	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	0.085000	0.731343	
mm_50733.1	chr6	52713666	52713866	+	1	NA	NA	NA	37	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.120000	0.701493	
mm_41139.1	chr5	87884911	87885111	+	1	NA	NA	NA	-684	NM_027128	69592	Mm.389652	NM_027128	ENSMUSG00000009580	Odam	2310011G06Rik|APIN	odontogenic, ameloblast asssociated	protein-coding	0.000000	0.398010	
mm_127283.1	chr15	99972765	99972965	+	1	NA	NA	NA	85	NM_001284523	207214	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	0.100000	0.701493	
mm_16222.1	chr2	173110752	173110952	+	1	NA	NA	NA	8673	NM_001081387	664799	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris|OTTMUSG00000016680	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.035000	0.532338	
mm_84870.1	chr9	79639675	79639875	-	1	NA	NA	NA	78947	NM_001290308	12816	Mm.3819	NM_007730	ENSMUSG00000032332	Col12a1	-	collagen, type XII, alpha 1	protein-coding	0.035000	0.502488	
mm_58108.1	chr6	138421292	138421492	-	1	NA	NA	NA	-1713	NR_126073	319702	Mm.403785	NR_126072	ENSMUSG00000089957	A830011K09Rik	-	RIKEN cDNA A830011K09 gene	ncRNA	0.030000	0.577114	73(CCTTTTCTACTC,+,0.00)
mm_172468.1	chr7	43213900	43214100	+	1	NA	NA	NA	-39	NM_001177525	100170401		NM_001177525		EU599041	TU7	expressed sequence EU599041	protein-coding	0.015000	0.532338	
mm_97926.1	chr11	83640371	83640571	+	1	NA	NA	NA	8907	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.020000	0.452736	
mm_90368.1	chr10	127167577	127167777	+	1	NA	NA	NA	1846	NM_001244618	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.015000	0.577114	-37(GGGTTGAAAAGG,-,0.00)
mm_130939.1	chr15	103239702	103239902	-	1	NA	NA	NA	14	NM_001076789	12419	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0.080000	0.597015	
mm_40865.1	chr5	73651768	73651968	+	1	NA	NA	NA	488	NM_178387	73472	Mm.87067	NM_178387	ENSMUSG00000029155	Spata18	1700067I02Rik	spermatogenesis associated 18	protein-coding	0.035000	0.562189	40(CCCTTTTTAGGG,-,0.00)
mm_156964.1	chrX	169990126	169990326	+	1	NA	NA	NA	-11309	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.100000	0.621891	
mm_112359.1	chr12	119070438	119070638	-	1	NA	NA	NA	-104117	NM_029961	77706	Mm.261496	NM_029961	ENSMUSG00000072791	Abcb5	9230106F14Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 5	protein-coding	0.000000	0.363184	67(TACTTTTTAAGG,-,0.00),69(CTTTTTAAGGCT,+,0.00)
mm_57198.1	chr6	122850288	122850488	-	1	NA	NA	NA	5769	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.040000	0.477612	34(TCATTTATACCC,+,0.00)
mm_117891.1	chr13	99422781	99422981	-	1	NA	NA	NA	-10055	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.020000	0.537313	-29(GCTTTACAAGGG,+,0.00)
mm_140540.1	chr17	6782680	6782880	-	1	NA	NA	NA	0	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.180000	0.726368	
mm_67677.1	chr7	89189618	89189818	-	1	NA	NA	NA	149069	NM_028343	72759	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.005000	0.298507	
mm_55626.1	chr6	72310674	72310874	-	1	NA	NA	NA	6164	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.020000	0.537313	
mm_30416.1	chr3	152265736	152265936	-	1	NA	NA	NA	484	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.130000	0.756219	
mm_146318.1	chr18	80555130	80555330	+	1	NA	NA	NA	-10684	NR_028424	100039348	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.035000	0.547264	
mm_102156.1	chr11	53712984	53713184	-	1	NA	NA	NA	-5765	NM_009012	19360	Mm.4888	NM_009012	ENSMUSG00000020380	Rad50	Mrell|Rad50l	RAD50 double strand break repair protein	protein-coding	0.000000	0.482587	-35(GCCCCTTAAAAG,-,0.00),-34(CCCCTTAAAAGA,-,0.00),-33(CCCTTAAAAGAC,+,0.00)
mm_68544.1	chr7	114117674	114117874	-	1	NA	NA	NA	7	NM_025846	66922	Mm.276572	NM_025846	ENSMUSG00000055723	Rras2	2610016H24Rik|C86394|TC21	related RAS viral (r-ras) oncogene 2	protein-coding	0.105000	0.716418	
mm_75865.1	chr8	70760821	70761021	-	1	NA	NA	NA	0	NM_183170	234384	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0.110000	0.696517	
mm_145899.1	chr18	65631645	65631845	+	1	NA	NA	NA	-12130	NR_105742	100526497		NR_105742	ENSMUSG00000077113	Mir466p	mmu-mir-466p	microRNA 466p	ncRNA	0.005000	0.437811	
mm_115419.1	chr13	117050493	117050693	+	1	NA	NA	NA	-25077	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.025000	0.532338	-84(TCCCATAAAGGG,-,0.00)
mm_133000.1	chr16	55966214	55966414	+	1	NA	NA	NA	39	NM_024218	68193	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0.040000	0.522388	46(TGCCCTATAAGG,-,0.00)
mm_50233.1	chr6	42351016	42351216	+	1	NA	NA	NA	1288	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.015000	0.666667	
mm_4445.1	chr1	172550657	172550857	+	1	NA	NA	NA	49	NR_040558	71319	Mm.123774	NR_040558	ENSMUSG00000085184	4933439K11Rik	-	RIKEN cDNA 4933439K11 gene	ncRNA	0.025000	0.597015	
mm_165883.1	chr4	42773891	42774091	-	1	NA	NA	NA	0	NM_011124	18829	Mm.220853	NM_011124	ENSMUSG00000094686	Ccl21a	6CKBAC2|6Ckine|ALP|AW987545|CKb9|SCYA21a|SLC|Scya21|Scya21b|Tca4|plt	chemokine (C-C motif) ligand 21A (serine)	protein-coding	0.020000	0.532338	-32(GCATAAATAGGC,+,0.00)
mm_166645.1	chr6	85122630	85122830	-	1	NA	NA	NA	3364	NM_001034902	545861	Mm.321419	NM_001034902	ENSMUSG00000072952	Gm5878	EG545861	predicted gene 5878	protein-coding	0.010000	0.437811	
mm_86669.1	chr10	18055458	18055658	+	1	NA	NA	NA	-382	NM_009048	19707	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0.120000	0.756219	
mm_170847.1	chr2	177600238	177600438	+	1	NA	NA	NA	102112	NR_036450	433520	Mm.425117	NM_001024825		Gm14403	OTTMUSG00000016571	predicted gene 14403	ncRNA	0.015000	0.502488	
mm_55704.1	chr6	72957733	72957933	-	1	NA	NA	NA	399	NM_001039392	19240	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.040000	0.631841	
mm_69272.1	chr7	127929994	127930194	-	1	NA	NA	NA	19	NM_133351	76560	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0.025000	0.587065	
mm_68826.1	chr7	126200044	126200244	-	1	NA	NA	NA	264	NM_028816	74204	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|mKIAA0370	exportin 6	protein-coding	0.095000	0.711443	84(TCCTTTTAAAGG,-,0.00),85(CCTTTTAAAGGT,+,0.00),86(CTTTTAAAGGTG,+,0.00)
mm_111804.1	chr12	105009974	105010174	-	1	NA	NA	NA	-265	NM_172500	212073	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.110000	0.781095	
mm_144783.1	chr18	35854597	35854797	+	1	NA	NA	NA	24879	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.005000	0.577114	
mm_139853.1	chr17	69968981	69969181	+	1	NA	NA	NA	8	NM_001347411	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.115000	0.706468	
mm_165561.1	chr3	14886447	14886647	+	1	NA	NA	NA	121	NM_009801	12349	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0.090000	0.726368	
mm_74931.1	chr8	25754132	25754332	-	1	NA	NA	NA	48	NM_028102	72108	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	0.135000	0.781095	
mm_158034.1	chrX	98259658	98259858	-	1	NA	NA	NA	111001	NM_013476	11835	Mm.39005	NM_013476	ENSMUSG00000046532	Ar	AW320017|Tfm	androgen receptor	protein-coding	0.000000	0.398010	
mm_102279.1	chr11	55395484	55395684	-	1	NA	NA	NA	24496	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.020000	0.522388	
mm_94154.1	chr10	128744174	128744374	-	1	NA	NA	NA	-218	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.015000	0.532338	
mm_118976.1	chr14	28030289	28030489	+	1	NA	NA	NA	407982	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	0.000000	0.427861	
mm_158633.1	chrX	153696127	153696327	-	1	NA	NA	NA	53	NM_175429	207474	Mm.271572	NM_175429	ENSMUSG00000041633	Kctd12b	9530071H11Rik|B430319H24Rik	potassium channel tetramerisation domain containing 12b	protein-coding	0.005000	0.507463	
mm_40476.1	chr5	54045728	54045928	+	1	NA	NA	NA	47305	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.000000	0.497512	
mm_54298.1	chr6	29397560	29397760	-	1	NA	NA	NA	1076	NM_001347073	232664	Mm.251303	NM_145574	ENSMUSG00000029769	Ccdc136	4921511K06Rik|BC006583	coiled-coil domain containing 136	protein-coding	0.025000	0.587065	
mm_91187.1	chr10	21125344	21125544	-	1	NA	NA	NA	35540	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.015000	0.348259	
mm_140606.1	chr17	10320236	10320436	-	1	NA	NA	NA	417	NR_037588	100526796	Mm.384135	NR_037588		Cahm	B930003M22Rik	colon adenocarcinoma hypermethylated RNA	ncRNA	0.065000	0.557214	
mm_32869.1	chr4	118431110	118431310	+	1	NA	NA	NA	1509	NM_001039176	54325	Mm.282096	NM_019422	ENSMUSG00000006390	Elovl1	AA407424|BB151133|Ssc1	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 1	protein-coding	0.010000	0.447761	
mm_71414.1	chr8	46474283	46474483	+	1	NA	NA	NA	3346	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.010000	0.422886	
mm_49248.1	chr6	17307786	17307986	+	1	NA	NA	NA	246	NM_001243064	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.035000	0.552239	
mm_27649.1	chr3	63929295	63929495	-	1	NA	NA	NA	-10	NM_177856	329659	Mm.39342	NM_177856	ENSMUSG00000048581	E130311K13Rik	-	RIKEN cDNA E130311K13 gene	protein-coding	0.130000	0.736318	
mm_40551.1	chr5	58132448	58132648	+	1	NA	NA	NA	320450	NR_046190	78163	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA	0.005000	0.363184	
mm_155635.1	chrX	85048196	85048396	+	1	NA	NA	NA	1	NM_001314034	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.090000	0.726368	
mm_94891.1	chr11	28763370	28763570	+	1	NA	NA	NA	-258	NR_029828	387213		NR_029828	ENSMUSG00000065415	Mir217	Mirn217|mir-217|mmu-mir-217	microRNA 217	ncRNA	0.000000	0.268657	43(CTTTTAATATCC,+,0.00)
mm_49004.1	chr6	4756927	4757127	+	1	NA	NA	NA	9721	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.030000	0.467662	
mm_124975.1	chr15	20448985	20449185	+	1	NA	NA	NA	217665	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.010000	0.567164	
mm_11546.1	chr2	32657507	32657707	+	1	NA	NA	NA	11012	NM_001146348	13805	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	0.040000	0.582090	
mm_57572.1	chr6	127139136	127139336	-	1	NA	NA	NA	-10153	NR_040274	77558	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.040000	0.542289	
mm_99155.1	chr11	100580787	100580987	+	1	NA	NA	NA	4996	NM_001146318	12799	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.010000	0.412935	
mm_57600.1	chr6	127796185	127796385	-	1	NA	NA	NA	-8142	NR_106092	102466996		NR_106092	ENSMUSG00000104804	Mir7233	mmu-mir-7233	microRNA 7233	ncRNA	0.005000	0.472637	
mm_123347.1	chr14	63141709	63141909	-	1	NA	NA	NA	19347	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.015000	0.527363	
mm_73136.1	chr8	94977012	94977212	+	1	NA	NA	NA	3	NM_001198894	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.030000	0.582090	
mm_66054.1	chr7	30737836	30738036	-	1	NA	NA	NA	1471	NM_008085	14447	Mm.436562	NM_008085	ENSMUSG00000061099	Gapdhs	Gapd-s|Gapds	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein-coding	0.025000	0.661692	
mm_87299.1	chr10	42534767	42534967	+	1	NA	NA	NA	32813	NM_017472	54198	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.035000	0.482587	
mm_30252.1	chr3	146596500	146596700	-	1	NA	NA	NA	-549	NM_009474	22262	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.005000	0.447761	
mm_152951.1	chr19	29047738	29047938	-	1	NA	NA	NA	64	NM_021299	56248	Mm.196067	NM_021299	ENSMUSG00000024782	Ak3	AA407498|AI506714|AK-3|Ak3l|Ak3l1|Akl3l	adenylate kinase 3	protein-coding	0.105000	0.731343	
mm_49582.1	chr6	30642768	30642968	+	1	NA	NA	NA	3650	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.025000	0.497512	
mm_91040.1	chr10	18545700	18545900	-	1	NA	NA	NA	276	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	0.060000	0.666667	
mm_85109.1	chr9	95404641	95404841	-	1	NA	NA	NA	2529	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.030000	0.562189	
mm_11876.1	chr2	49451746	49451946	+	1	NA	NA	NA	360	NM_172663	227867	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2 (Drosophila)	protein-coding	0.110000	0.691542	
mm_121934.1	chr14	24003855	24004055	-	1	NA	NA	NA	250	NM_001253375	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.065000	0.582090	
mm_28156.1	chr3	87748525	87748725	-	1	NA	NA	NA	-2	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding	0.045000	0.651741	
mm_83024.1	chr9	37207933	37208133	-	1	NA	NA	NA	-190	NM_025464	66279	Mm.41451	NM_025464	ENSMUSG00000032121	Tmem218	1810021J13Rik|AV004931	transmembrane protein 218	protein-coding	0.045000	0.462687	
mm_86236.1	chr9	120755530	120755730	-	1	NA	NA	NA	159620	NR_040742	76402	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0.030000	0.547264	
mm_160805.1	chr11	9048883	9049083	-	1	NA	NA	NA	8	NM_001290520	194974	Mm.79210	NM_177576	ENSMUSG00000040985	Sun3	Sunc1	Sad1 and UNC84 domain containing 3	protein-coding	0.050000	0.621891	
mm_33580.1	chr4	132532588	132532788	+	1	NA	NA	NA	2726	NM_007512	11983	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0.010000	0.477612	
mm_37947.1	chr4	133169541	133169741	-	1	NA	NA	NA	-26014	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.005000	0.482587	
mm_127419.1	chr15	101261598	101261798	+	1	NA	NA	NA	-5148	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.005000	0.562189	
mm_83175.1	chr9	40783556	40783756	-	1	NA	NA	NA	-17617	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.005000	0.417910	
mm_102350.1	chr11	58201466	58201666	-	1	NA	NA	NA	2010	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.020000	0.527363	
mm_92125.1	chr10	64055653	64055853	-	1	NA	NA	NA	34502	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.005000	0.427861	
mm_79171.1	chr9	47852464	47852664	+	1	NA	NA	NA	-34356	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.010000	0.402985	
mm_66760.1	chr7	46728513	46728713	-	1	NA	NA	NA	3990	NM_011316	20211	Mm.3489	NM_011316	ENSMUSG00000040017	Saa4	Saa-4|Saa-5	serum amyloid A 4	protein-coding	0.000000	0.512438	
mm_135634.1	chr16	52338425	52338625	-	1	NA	NA	NA	114556	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.378109	
mm_130349.1	chr15	97749691	97749891	-	1	NA	NA	NA	17875	NM_001177810	223864	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.010000	0.532338	
mm_150668.1	chr19	42045778	42045978	+	1	NA	NA	NA	27	NM_026152	67432	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding	0.010000	0.547264	
mm_47653.1	chr5	125392167	125392367	-	1	NA	NA	NA	-2250	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.005000	0.462687	
mm_157424.1	chrX	38564553	38564753	-	1	NA	NA	NA	11543	NM_028288	72584	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	0.070000	0.671642	
mm_76850.1	chr8	105326191	105326391	-	1	NA	NA	NA	-15	NM_177449	234684	Mm.381717	NM_177449	ENSMUSG00000041679	Lrrc29	A630024J02Rik|FBL9|FBXL9	leucine rich repeat containing 29	protein-coding	0.085000	0.611940	
mm_98866.1	chr11	97798908	97799108	+	1	NA	NA	NA	-664	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.035000	0.527363	
mm_29219.1	chr3	107211222	107211422	-	1	NA	NA	NA	10410	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.477612	
mm_99727.1	chr11	106300692	106300892	+	1	NA	NA	NA	1104	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.025000	0.577114	
mm_172103.1	chr6	31799391	31799591	-	1	NA	NA	NA	-235554	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	0.025000	0.477612	
mm_170421.1	chr18	7033617	7033817	+	1	NA	NA	NA	-28938	NM_177595	210719	Mm.257186	NM_177595	ENSMUSG00000061013	Mkx	9430023B20Rik|Irxl1	mohawk homeobox	protein-coding	0.005000	0.452736	
mm_19013.1	chr2	76905715	76905915	-	1	NA	NA	NA	76732	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.005000	0.457711	
mm_26821.1	chr3	10335556	10335756	-	1	NA	NA	NA	0	NM_001010834	241877	Mm.442146	NM_001010834	ENSMUSG00000058921	Slc10a5	Gm405|mP5	solute carrier family 10 (sodium/bile acid cotransporter family), member 5	protein-coding	0.010000	0.388060	
mm_67983.1	chr7	100662336	100662536	-	1	NA	NA	NA	-42	NM_001163182	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.030000	0.542289	
mm_140638.1	chr17	12652646	12652846	-	1	NA	NA	NA	23092	NM_009202	20517	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.040000	0.517413	
mm_54505.1	chr6	35510657	35510857	-	1	NA	NA	NA	29131	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.303483	-49(ATTTTTAAAGGG,+,0.00)
mm_145283.1	chr18	53195091	53195291	+	1	NA	NA	NA	18826	NM_026386	67804	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.005000	0.323383	
mm_17876.1	chr2	34958063	34958263	-	1	NA	NA	NA	3609	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.015000	0.547264	
mm_57347.1	chr6	124756243	124756443	-	1	NA	NA	NA	144	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.170000	0.830846	
mm_13395.1	chr2	103970045	103970245	+	1	NA	NA	NA	-142	NM_008505	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.065000	0.601990	
mm_93295.1	chr10	96400675	96400875	-	1	NA	NA	NA	174568	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.005000	0.368159	
mm_165790.1	chr3	135440169	135440369	-	1	NA	NA	NA	1510	NM_025356	66105	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.020000	0.437811	
mm_37547.1	chr4	125127197	125127397	-	1	NA	NA	NA	584	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.025000	0.497512	
mm_9402.1	chr1	172258324	172258524	-	1	NA	NA	NA	0	NM_013734	27222	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	0.015000	0.592040	
mm_151487.1	chr19	58679431	58679631	+	1	NA	NA	NA	9166	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.015000	0.457711	-77(CCCTATTAAAAA,-,0.00)
mm_14722.1	chr2	143989922	143990122	+	1	NA	NA	NA	21241	NM_133626	81910	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.030000	0.487562	
mm_165025.1	chr19	32472767	32472967	+	1	NA	NA	NA	-12902	NM_010799	17330	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0.000000	0.313433	
mm_25813.1	chr3	127790944	127791144	+	1	NA	NA	NA	1131	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.030000	0.432836	
mm_73109.1	chr8	94666682	94666882	+	1	NA	NA	NA	182	NM_024191	107566	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0.140000	0.771144	
mm_119354.1	chr14	41114664	41114864	+	1	NA	NA	NA	9731	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.025000	0.512438	
mm_82867.1	chr9	32344230	32344430	-	1	NA	NA	NA	-93	NM_010605	16521	Mm.69472	NM_010605	ENSMUSG00000032034	Kcnj5	GIRK4|Kir3.4	potassium inwardly-rectifying channel, subfamily J, member 5	protein-coding	0.060000	0.671642	
mm_135135.1	chr16	35845262	35845462	-	1	NA	NA	NA	26020	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.000000	0.393035	
mm_143060.1	chr17	57011127	57011327	-	1	NA	NA	NA	61	NM_133801	98053	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0.055000	0.532338	
mm_140270.1	chr17	84683072	84683272	+	1	NA	NA	NA	51	NM_026180	67470	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP-binding cassette, sub-family G (WHITE), member 8	protein-coding	0.005000	0.552239	
mm_75355.1	chr8	45261886	45262086	-	1	NA	NA	NA	45	NM_028066	109821	Mm.33326	NM_028066	ENSMUSG00000031645	F11	1600027G01Rik|AI503996|Cf11|FXI|PTA	coagulation factor XI	protein-coding	0.030000	0.432836	
mm_134663.1	chr16	22246774	22246974	-	1	NA	NA	NA	19131	NM_001330554	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding	0.005000	0.318408	
mm_133810.1	chr16	95702317	95702517	+	1	NA	NA	NA	10	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.100000	0.706468	
mm_7529.1	chr1	124240154	124240354	-	1	NA	NA	NA	-194695	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.333333	
mm_73508.1	chr8	107367981	107368181	+	1	NA	NA	NA	35124	NM_008706	18104	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	0.020000	0.522388	
mm_6098.1	chr1	63686811	63687011	-	1	NA	NA	NA	16	NM_001081658	241073	Mm.297680	NM_001081658	ENSMUSG00000069085	Dytn	Gm215	dystrotelin	protein-coding	0.005000	0.447761	-33(AGCTCTTAAAAG,-,0.00)
mm_163392.1	chr12	63387605	63387805	+	1	NA	NA	NA	699918	NR_131949	73309	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0.010000	0.303483	
mm_72930.1	chr8	91313146	91313346	+	1	NA	NA	NA	-24	NM_173431	244585	Mm.324592	NM_173431	ENSMUSG00000033282	Rpgrip1l	1700047E16Rik|4931437C01|Ftm|Nphp8	Rpgrip1-like	protein-coding	0.080000	0.641791	
mm_169376.1	chr14	37229208	37229408	-	1	NA	NA	NA	-93986	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.070000	0.527363	-34(CTCCTTAAGAGG,-,0.00)
mm_114470.1	chr13	67813704	67813904	+	1	NA	NA	NA	-12	NM_198322	212569	Mm.358842	NM_198322	ENSMUSG00000030446	Zfp273	6820416H06Rik|Rslcan1	zinc finger protein 273	protein-coding	0.040000	0.507463	
mm_34354.1	chr4	144613575	144613775	+	1	NA	NA	NA	-32	NM_001081248	435815	Mm.439623	NM_001081248	ENSMUSG00000070609	Gm13177	OTTMUSG00000010747	predicted gene 13177	protein-coding	0.005000	0.507463	
mm_124298.1	chr14	103055137	103055337	-	1	NA	NA	NA	8225	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.040000	0.517413	
mm_71464.1	chr8	46534487	46534687	+	1	NA	NA	NA	-17482	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.050000	0.542289	
mm_118198.1	chr13	107885421	107885621	-	1	NA	NA	NA	4543	NM_145456	67263	Mm.490418	NM_145456	ENSMUSG00000032846	Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.000000	0.293532	
mm_41411.1	chr5	90787474	90787674	+	1	NA	NA	NA	1473	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.015000	0.348259	
mm_42064.1	chr5	109055618	109055818	+	1	NA	NA	NA	3734	NM_001104622	384219	Mm.469885	NM_001104622	ENSMUSG00000091450	Vmn2r11	EG384219	vomeronasal 2, receptor 11	protein-coding	0.015000	0.482587	-18(CCTTTTCAGGTG,+,0.00)
mm_153454.1	chr19	41076971	41077171	-	1	NA	NA	NA	42	NM_153520	226115	Mm.54119	NM_153520	ENSMUSG00000050121	Opalin	Tmem10|Tmp10	oligodendrocytic myelin paranodal and inner loop protein	protein-coding	0.005000	0.542289	
mm_146866.1	chr18	24603677	24603877	-	1	NA	NA	NA	40	NM_139143	106957	Mm.21688	NM_139143	ENSMUSG00000024270	Slc39a6	Ermelin	solute carrier family 39 (metal ion transporter), member 6	protein-coding	0.110000	0.701493	
mm_7105.1	chr1	89563408	89563608	-	1	NA	NA	NA	108697	NM_001037136	347722	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.005000	0.502488	-33(GCCTATAAAAGT,-,0.00)
mm_59149.1	chr7	24369912	24370112	+	1	NA	NA	NA	-251	NM_001163510	16534	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0.015000	0.542289	
mm_61731.1	chr7	81862542	81862742	+	1	NA	NA	NA	-45	NM_001291282	107769	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.020000	0.517413	66(GGCCAGTAAAGG,-,0.00)
mm_52636.1	chr6	117174431	117174631	+	1	NA	NA	NA	5996	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.015000	0.348259	
mm_141638.1	chr17	33067939	33068139	-	1	NA	NA	NA	19	NM_001009544	74042	Mm.84774	NM_001009544	ENSMUSG00000023350	4921501E09Rik	PHF8	RIKEN cDNA 4921501E09 gene	protein-coding	0.005000	0.457711	
mm_135875.1	chr16	62846925	62847125	-	1	NA	NA	NA	15	NM_026577	68146	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	0.095000	0.646766	
mm_80314.1	chr9	74861761	74861961	+	1	NA	NA	NA	-60	NM_008262	15379	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	0.135000	0.731343	
mm_145248.1	chr18	51235407	51235607	+	1	NA	NA	NA	117609	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0.000000	0.432836	
mm_34168.1	chr4	139923357	139923557	+	1	NA	NA	NA	9617	NR_045160	71235	Mm.61253	NR_045159	ENSMUSG00000085928	4933427I22Rik	-	RIKEN cDNA 4933427I22 gene	ncRNA	0.020000	0.487562	-33(CTGTTTAAAAAG,-,0.00),-31(GTTTAAAAAGTC,+,0.00)
mm_154442.1	chrM	1317	1517	-	1	NA	NA	NA	NA	NA									0.020000	0.328358	
mm_76082.1	chr8	79372558	79372758	-	1	NA	NA	NA	26810	NM_008539	17125	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.025000	0.502488	
mm_82625.1	chr9	21809825	21810025	-	1	NA	NA	NA	75	NR_106051	102465657		NR_106051	ENSMUSG00000098473	Mir7083	Gm27888|mmu-mir-7083	microRNA 7083	ncRNA	0.020000	0.592040	
mm_118484.1	chr14	12189885	12190085	+	1	NA	NA	NA	42	NM_001347593	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.020000	0.522388	
mm_150514.1	chr19	39031165	39031365	+	1	NA	NA	NA	24246	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.005000	0.358209	
mm_18496.1	chr2	62606299	62606499	-	1	NA	NA	NA	-32378	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.045000	0.447761	
mm_14218.1	chr2	127337866	127338066	+	1	NA	NA	NA	-673	NM_172539	215095	Mm.31313	NM_172539	ENSMUSG00000050468	Astl	7420700F21|C87576|Sas1b	astacin-like metalloendopeptidase (M12 family)	protein-coding	0.015000	0.477612	56(CTATATTAAAGC,-,0.00)
mm_152472.1	chr19	10974587	10974787	-	1	NA	NA	NA	-17	NM_023529	69826	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	0.005000	0.522388	
mm_71157.1	chr8	40385258	40385458	+	1	NA	NA	NA	-38457	NM_178395	70546	Mm.34326	NM_178395	ENSMUSG00000039470	Zdhhc2	5730415P04Rik|6430583A19Rik	zinc finger, DHHC domain containing 2	protein-coding	0.010000	0.323383	
mm_356.1	chr1	33719782	33719982	+	1	NA	NA	NA	-14	NM_008999	19335	Mm.86744	NM_008999	ENSMUSG00000004768	Rab23	AW545388|opb|opb2	RAB23, member RAS oncogene family	protein-coding	0.100000	0.681592	
mm_554.1	chr1	38019315	38019515	+	1	NA	NA	NA	21405	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.025000	0.502488	
mm_45652.1	chr5	77095056	77095256	-	1	NA	NA	NA	111	NM_001159901	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.085000	0.681592	
mm_157975.1	chrX	93832574	93832774	-	1	NA	NA	NA	-579	NM_145630	236900	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	0.025000	0.497512	
mm_55353.1	chr6	56837255	56837455	-	1	NA	NA	NA	5296	NM_012056	27055	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	0.035000	0.477612	
mm_148330.1	chr18	84086370	84086570	-	1	NA	NA	NA	92	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.030000	0.477612	
mm_104272.1	chr11	89092824	89093024	-	1	NA	NA	NA	19083	NM_001033266	217071	Mm.342127	NM_001033266	ENSMUSG00000072553	Gm525	-	predicted gene 525	protein-coding	0.035000	0.462687	
mm_87563.1	chr10	56115308	56115508	+	1	NA	NA	NA	8491	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding	0.110000	0.691542	
mm_153685.1	chr19	44396647	44396847	-	1	NA	NA	NA	10962	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.015000	0.527363	
mm_116267.1	chr13	34649373	34649573	-	1	NA	NA	NA	3208	NM_025831	66895	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0.010000	0.452736	
mm_23161.1	chr3	40540671	40540871	+	1	NA	NA	NA	4	NM_175515	380614	Mm.105309	NM_175515	ENSMUSG00000060798	Intu	9230116I04Rik|9430087H23Rik|Pdzd6|Pdzk6|mKIAA1284	inturned planar cell polarity protein	protein-coding	0.095000	0.686567	
mm_77294.1	chr8	116978794	116978994	-	1	NA	NA	NA	49	NM_027103	69528	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0.105000	0.691542	
mm_171281.1	chr3	88835165	88835365	+	1	NA	NA	NA	34	NM_001242372	76022	Mm.126870	NM_027389	ENSMUSG00000054199	Gon4l	1500041I23Rik|2610100B20Rik|3632445O20Rik|5430404N14Rik|AA387005	gon-4-like (C.elegans)	protein-coding	0.105000	0.671642	
mm_114093.1	chr13	54687780	54687980	+	1	NA	NA	NA	-72	NM_001146026	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.125000	0.701493	
mm_15706.1	chr2	164006471	164006671	+	1	NA	NA	NA	11374	NM_018753	54401	Mm.34319	NM_018753	ENSMUSG00000018326	Ywhab	1300003C17Rik|14-3-3b	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	protein-coding	0.025000	0.383085	
mm_137841.1	chr17	31001839	31002039	+	1	NA	NA	NA	47256	NM_177465	52020	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0.015000	0.537313	22(TCCTATATGGCC,+,0.00)
mm_150925.1	chr19	46219634	46219834	+	1	NA	NA	NA	67176	NM_178930	107338	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	0.005000	0.338308	
mm_40017.1	chr5	33148856	33149056	+	1	NA	NA	NA	44737	NM_019810	20537	Mm.25237	NM_019810	ENSMUSG00000011034	Slc5a1	Sglt1	solute carrier family 5 (sodium/glucose cotransporter), member 1	protein-coding	0.030000	0.512438	
mm_124180.1	chr14	93876878	93877078	-	1	NA	NA	NA	11910	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.010000	0.293532	
mm_29003.1	chr3	101592366	101592566	-	1	NA	NA	NA	12241	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.045000	0.562189	
mm_14605.1	chr2	136501947	136502147	+	1	NA	NA	NA	-30274	NM_175667	319196	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0.010000	0.383085	34(CCCTATATGCCG,+,0.00)
mm_80243.1	chr9	72736777	72736977	+	1	NA	NA	NA	-70397	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.030000	0.358209	
mm_46110.1	chr5	92360999	92361199	-	1	NA	NA	NA	2178	NM_019494	56066	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0.025000	0.487562	
mm_83062.1	chr9	37546058	37546258	-	1	NA	NA	NA	6587	NM_022029	64011	Mm.335065	NM_022029	ENSMUSG00000053310	Nrgn	0710001B06Rik|AI838505|NG|NG/RC3|Pss1|R75334|RC3	neurogranin	protein-coding	0.055000	0.537313	-61(CCCCATTAAAAC,-,0.00)
mm_123760.1	chr14	70205780	70205980	-	1	NA	NA	NA	142	NM_001271407	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.075000	0.721393	
mm_96984.1	chr11	70656635	70656835	+	1	NA	NA	NA	-441	NM_001136062	13808	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.035000	0.611940	
mm_42365.1	chr5	114922411	114922611	+	1	NA	NA	NA	-729	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.030000	0.447761	
mm_146331.1	chr18	81130369	81130569	+	1	NA	NA	NA	-143891	NM_178280	20689	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	sal-like 3 (Drosophila)	protein-coding	0.005000	0.308458	
mm_162407.1	chr1	86433876	86434076	+	1	NA	NA	NA	7647	NM_027966	71863	Mm.179627	NM_027966	ENSMUSG00000036574	1700019O17Rik	-	RIKEN cDNA 1700019O17 gene	protein-coding	0.020000	0.522388	
mm_113443.1	chr13	34924347	34924547	+	1	NA	NA	NA	38	NM_025750	66761	Mm.157047	NM_025750	ENSMUSG00000021415	4933417A18Rik	-	RIKEN cDNA 4933417A18 gene	protein-coding	0.015000	0.497512	
mm_20490.1	chr2	130179243	130179443	-	1	NA	NA	NA	21	NM_009225	20638	Mm.88216	NM_009225	ENSMUSG00000027404	Snrpb	AL024368|AU018828|SM-B|SM11|SMB|SNRNP-B	small nuclear ribonucleoprotein B	protein-coding	0.090000	0.631841	
mm_77341.1	chr8	119569930	119570130	-	1	NA	NA	NA	5170	NM_175185	72552	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	0.010000	0.527363	
mm_86981.1	chr10	25436920	25437120	+	1	NA	NA	NA	28652	NM_013511	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.015000	0.487562	
mm_134074.1	chr16	8671500	8671700	-	1	NA	NA	NA	553	NM_025821	52502	Mm.142095	NM_025821	ENSMUSG00000008393	Carhsp1	1200011K09Rik|Crhsp-24|D16Ertd465e	calcium regulated heat stable protein 1	protein-coding	0.070000	0.646766	
mm_173043.1	chrX	116287135	116287335	-	1	NA	NA	NA	-161709	NM_001033471	382239	Mm.336224	NM_001033471	ENSMUSG00000072995	Cpxcr1	Gm1143	CPX chromosome region, candidate 1	protein-coding	0.040000	0.472637	
mm_116348.1	chr13	38960362	38960562	-	1	NA	NA	NA	75	NM_001170430	108652	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	0.135000	0.736318	
mm_107271.1	chr12	29533258	29533458	+	1	NA	NA	NA	-1547	NM_001093776	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.030000	0.626866	
mm_150934.1	chr19	46305796	46305996	+	1	NA	NA	NA	-34	NM_001177370	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.055000	0.656716	
mm_1570.1	chr1	74245888	74246088	+	1	NA	NA	NA	9438	NM_029711	76709	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.015000	0.407960	
mm_113237.1	chr13	27259495	27259695	+	1	NA	NA	NA	106	NM_025896	67000	Mm.69279	NM_025896	ENSMUSG00000038883	Prl3a1	1600016E11Rik|Ghd9|PLP-H|PLP-I|Plpi|Prlpi	prolactin family 3, subfamily a, member 1	protein-coding	0.000000	0.388060	
mm_18565.1	chr2	65239152	65239352	-	1	NA	NA	NA	-626	NM_027225	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.070000	0.646766	
mm_56589.1	chr6	108164915	108165115	-	1	NA	NA	NA	20568	NM_145937	58911	Mm.439876	NM_145937	ENSMUSG00000030101	Sumf1	AA543204|AI463102|AI851573|FGE	sulfatase modifying factor 1	protein-coding	0.015000	0.467662	-51(GACCTTATAAGC,-,0.00),-49(CCTTATAAGCCT,+,0.00),-37(TGTTATAAAAGG,-,0.00)
mm_7065.1	chr1	87621429	87621629	-	1	NA	NA	NA	1217	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.000000	0.557214	
mm_52219.1	chr6	103510813	103511013	+	1	NA	NA	NA	37	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.060000	0.626866	
mm_20299.1	chr2	127133796	127133996	-	1	NA	NA	NA	58	NM_144818	215387	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|HCAP-H|mKIAA0074	non-SMC condensin I complex, subunit H	protein-coding	0.110000	0.641791	
mm_31921.1	chr4	85388036	85388236	+	1	NA	NA	NA	182680	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.000000	0.452736	
mm_19088.1	chr2	79254648	79254848	-	1	NA	NA	NA	-678	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.005000	0.482587	
mm_74999.1	chr8	27227938	27228138	-	1	NA	NA	NA	1550	NM_013462	11556	Mm.278475	NM_013462	ENSMUSG00000031489	Adrb3	Adrb-3	adrenergic receptor, beta 3	protein-coding	0.090000	0.621891	
mm_65441.1	chr7	25388921	25389121	-	1	NA	NA	NA	1091	NM_001039507	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.010000	0.517413	
mm_138627.1	chr17	35841698	35841898	+	1	NA	NA	NA	300	NM_001010833	240087	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	0.050000	0.557214	
mm_147974.1	chr18	67304555	67304755	-	1	NA	NA	NA	15432	NM_053261	114663	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0.025000	0.547264	
mm_108624.1	chr12	85598969	85599169	+	1	NA	NA	NA	-36	NM_001205052	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.160000	0.771144	
mm_139083.1	chr17	46711378	46711578	+	1	NA	NA	NA	15	NM_145488	224824	Mm.299399	NM_145488	ENSMUSG00000002763	Pex6	AI132582|D130055I09Rik|mKIAA4177	peroxisomal biogenesis factor 6	protein-coding	0.090000	0.651741	
mm_146619.1	chr18	10104367	10104567	-	1	NA	NA	NA	-74318	NM_001038589	59025	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0.005000	0.343284	
mm_81563.1	chr9	110415453	110415653	+	1	NA	NA	NA	-4255	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.015000	0.527363	
mm_61491.1	chr7	75725868	75726068	+	1	NA	NA	NA	-122370	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.015000	0.417910	
mm_99743.1	chr11	106500817	106501017	+	1	NA	NA	NA	-74	NR_030703	100216537		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.050000	0.537313	
mm_25275.1	chr3	105451793	105451993	+	1	NA	NA	NA	-437	NM_001039347	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	0.085000	0.686567	
mm_34406.1	chr4	145236229	145236429	+	1	NA	NA	NA	10541	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.010000	0.537313	
mm_60081.1	chr7	34168517	34168717	+	1	NA	NA	NA	-88	NM_016682	50995	Mm.27560	NM_016682	ENSMUSG00000052997	Uba2	AA986091|Arx|Sae2|UBA1|Ubl1a2|Uble1b	ubiquitin-like modifier activating enzyme 2	protein-coding	0.080000	0.646766	
mm_86674.1	chr10	18077463	18077663	+	1	NA	NA	NA	21623	NM_001111065	19707	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0.005000	0.422886	
mm_138351.1	chr17	34959477	34959677	+	1	NA	NA	NA	-339	NM_010478	15511	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	0.035000	0.552239	
mm_83895.1	chr9	56136255	56136455	-	1	NA	NA	NA	24715	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.015000	0.477612	
mm_70310.1	chr8	4226844	4227044	+	1	NA	NA	NA	117	NM_028175	72267	Mm.25479	NM_028175	ENSMUSG00000046589	Lrrc8e	1810049O03Rik|C87354	leucine rich repeat containing 8 family, member E	protein-coding	0.080000	0.696517	
mm_90108.1	chr10	117247887	117248087	+	1	NA	NA	NA	-9306	NM_029906	77397	Mm.118350	NM_029906	ENSMUSG00000020177	9530003J23Rik	Lyzf1	RIKEN cDNA 9530003J23 gene	protein-coding	0.010000	0.497512	
mm_135576.1	chr16	50429775	50429975	-	1	NA	NA	NA	2514	NM_027444	70508	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.065000	0.611940	
mm_69181.1	chr7	127232650	127232850	-	1	NA	NA	NA	380	NR_030674	100043580	Mm.482209	NR_030674	ENSMUSG00000000486	Gm4532	-	predicted gene 4532	ncRNA	0.030000	0.512438	-43(GGCCCTAAGAGG,-,0.00)
mm_125312.1	chr15	38079009	38079209	+	1	NA	NA	NA	-255	NM_001081359	70790	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.110000	0.626866	
mm_128654.1	chr15	59652750	59652950	-	1	NA	NA	NA	4196	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.035000	0.487562	
mm_51122.1	chr6	68049861	68050061	+	1	NA	NA	NA	-484262	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.005000	0.417910	
mm_146010.1	chr18	69345731	69345931	+	1	NA	NA	NA	110	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.025000	0.482587	
mm_105804.1	chr11	110251537	110251737	-	1	NA	NA	NA	139	NM_147218	76184	Mm.159704	NM_147218	ENSMUSG00000044749	Abca6	6330565N06Rik	ATP-binding cassette, sub-family A (ABC1), member 6	protein-coding	0.030000	0.507463	
mm_150372.1	chr19	34908051	34908251	+	1	NA	NA	NA	-14207	NM_183046	240641	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|B130024C23|C330014J10Rik|Mphosph1|magoo	kinesin family member 20B	protein-coding	0.000000	0.462687	-37(GACCATAAAAAG,-,0.00),-35(CCATAAAAAGGG,+,0.00)
mm_76447.1	chr8	85072014	85072214	-	1	NA	NA	NA	357	NM_001039514	330817	Mm.193086	NM_201408	ENSMUSG00000060038	Dhps	Dhs	deoxyhypusine synthase	protein-coding	0.110000	0.631841	
mm_23999.1	chr3	86783620	86783820	+	1	NA	NA	NA	137164	NM_001195496	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.020000	0.492537	
mm_75843.1	chr8	70616628	70616828	-	1	NA	NA	NA	-116	NM_153074	211228	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0.020000	0.547264	
mm_131967.1	chr16	24681677	24681877	+	1	NA	NA	NA	-40078	NM_001145954	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.015000	0.462687	
mm_166180.1	chr5	30960426	30960626	+	1	NA	NA	NA	-199	NM_016703	50907	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0.030000	0.522388	
mm_65533.1	chr7	25803521	25803721	-	1	NA	NA	NA	12909	NM_028775	74134	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0.030000	0.597015	
mm_130490.1	chr15	98778457	98778657	-	1	NA	NA	NA	-407	NM_011718	22410	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	0.045000	0.611940	
mm_166992.1	chr7	46240839	46241039	+	1	NA	NA	NA	-48	NM_013624	18419	Mm.8020	NM_013624	ENSMUSG00000009487	Otog	4932420K09|Otgn|twt	otogelin	protein-coding	0.005000	0.611940	
mm_107052.1	chr12	16653381	16653581	+	1	NA	NA	NA	11	NM_008747	18217	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT2R|NTRL	neurotensin receptor 2	protein-coding	0.035000	0.676617	
mm_18229.1	chr2	51933212	51933412	-	1	NA	NA	NA	1332	NM_001141982	71684	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	0.005000	0.487562	-67(CTTTATAGAGCA,+,0.00)
mm_47938.1	chr5	135349946	135350146	-	1	NA	NA	NA	-2	NM_001277891	94244	Mm.26037	NM_033571	ENSMUSG00000040013	Fkbp6	1700008G22Rik|36kDa|AU017274|D5Ertd724e|FKBP-36|FKBP-6	FK506 binding protein 6	protein-coding	0.120000	0.631841	
mm_84317.1	chr9	63745411	63745611	-	1	NA	NA	NA	12483	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.005000	0.353234	
mm_159121.1	chr2	69712424	69712624	-	1	NA	NA	NA	82	NM_177244	320720	Mm.289566	NM_177244	ENSMUSG00000027086	Fastkd1	5330408N05Rik|mKIAA1800	FAST kinase domains 1	protein-coding	0.030000	0.368159	
mm_85436.1	chr9	104062998	104063198	-	1	NA	NA	NA	23	NM_025692	66663	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	0.115000	0.641791	
mm_27506.1	chr3	55780784	55780984	-	1	NA	NA	NA	-1626	NM_010750	17116	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.055000	0.641791	
mm_162120.1	chrX	68761723	68761923	+	1	NA	NA	NA	-16	NM_174993	207854	Mm.284945	NM_174993	ENSMUSG00000062170	Fmr1nb	3830422N12Rik|NY-SAR-35|NYSAR35	fragile X mental retardation 1 neighbor	protein-coding	0.045000	0.507463	
mm_98145.1	chr11	87582139	87582339	+	1	NA	NA	NA	1178	NM_001284392	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding	0.020000	0.537313	
mm_9092.1	chr1	168675807	168676007	-	1	NA	NA	NA	185264	NR_105766	102465178		NR_105766	ENSMUSG00000098407	Mir6348	Gm27412|mmu-mir-6348	microRNA 6348	ncRNA	0.025000	0.537313	
mm_114417.1	chr13	64367791	64367991	+	1	NA	NA	NA	2629	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.015000	0.542289	
mm_116766.1	chr13	52600135	52600335	-	1	NA	NA	NA	3353	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.000000	0.472637	
mm_82202.1	chr9	124101877	124102077	+	1	NA	NA	NA	-206	NM_009915	12772	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.005000	0.358209	
mm_27810.1	chr3	78594314	78594514	-	1	NA	NA	NA	550473	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.025000	0.462687	
mm_55799.1	chr6	82760734	82760934	-	1	NA	NA	NA	13620	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.010000	0.512438	
mm_122913.1	chr14	54958411	54958611	-	1	NA	NA	NA	8096	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.015000	0.537313	
mm_112787.1	chr13	20184905	20185105	+	1	NA	NA	NA	94498	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.025000	0.467662	
mm_173174.1	chrX	50162264	50162464	-	1	NA	NA	NA	-152129	NM_146390	258385	Mm.377470	NM_146390	ENSMUSG00000050504	Olfr1323	MOR216-1	olfactory receptor 1323	protein-coding	0.015000	0.388060	
mm_44706.1	chr5	30814550	30814750	-	1	NA	NA	NA	9	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.100000	0.686567	
mm_68003.1	chr7	100938187	100938387	-	1	NA	NA	NA	-6126	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.045000	0.577114	
mm_67047.1	chr7	67290874	67291074	-	1	NA	NA	NA	68358	NM_001191051	75099	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.010000	0.308458	
mm_158571.1	chrX	150588013	150588213	-	1	NA	NA	NA	42	NM_029943	77622	Mm.440275	NM_029943	ENSMUSG00000025269	Apex2	C430040P13Rik|ape2	apurinic/apyrimidinic endonuclease 2	protein-coding	0.070000	0.606965	
mm_71697.1	chr8	61609311	61609511	+	1	NA	NA	NA	-18242	NM_001293774	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.010000	0.447761	
mm_65805.1	chr7	28962232	28962432	-	1	NA	NA	NA	-52	NM_021895	60595	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.150000	0.771144	
mm_125837.1	chr15	74958428	74958628	+	1	NA	NA	NA	3422	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.030000	0.557214	
mm_97919.1	chr11	83534996	83535196	+	1	NA	NA	NA	-4578	NM_013653	20304	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.000000	0.507463	
mm_79183.1	chr9	48403713	48403913	+	1	NA	NA	NA	41772	NM_172921	244853	Mm.325522	NM_172921	ENSMUSG00000044229	Nxpe4	C130036J11|D930028F11Rik|Fam55d	neurexophilin and PC-esterase domain family, member 4	protein-coding	0.020000	0.442786	
mm_47571.1	chr5	124478257	124478457	-	1	NA	NA	NA	-122	NM_030259	80291	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.070000	0.626866	
mm_108618.1	chr12	85524736	85524936	+	1	NA	NA	NA	50935	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.020000	0.532338	
mm_166047.1	chr4	130932029	130932229	+	1	NA	NA	NA	-12256	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.005000	0.462687	
mm_42298.1	chr5	114567311	114567511	+	1	NA	NA	NA	-840	NM_001004180	433940	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0.145000	0.761194	
mm_142328.1	chr17	43502701	43502901	-	1	NA	NA	NA	-28	NM_008585	17287	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	0.025000	0.457711	-95(TCTTTTAGAGCA,+,0.00),38(GTTTTTATGGCA,+,0.00)
mm_60879.1	chr7	46102602	46102802	+	1	NA	NA	NA	-1938	NM_001204411	16514	Mm.333863	NM_010602	ENSMUSG00000096146	Kcnj11	Kir6.2|mBIR	potassium inwardly rectifying channel, subfamily J, member 11	protein-coding	0.015000	0.552239	
mm_122958.1	chr14	54968057	54968257	-	1	NA	NA	NA	-630	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.010000	0.572139	
mm_85455.1	chr9	105144989	105145189	-	1	NA	NA	NA	-7	NM_028562	73532	Mm.23516	NM_028562	ENSMUSG00000032566	1700080E11Rik	AI429110|Tseg8	RIKEN cDNA 1700080E11 gene	protein-coding	0.020000	0.537313	
mm_53474.1	chr6	134925206	134925406	+	1	NA	NA	NA	-3786	NR_037956	381822	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	0.005000	0.343284	
mm_158954.1	chr1	88134720	88134920	+	1	NA	NA	NA	11	NM_145079	94284	Mm.300095	NM_145079	ENSMUSG00000054545	Ugt1a6a	UDPGT|UDPGT 1-6|UGT1-06|UGT1.6|Ugt1a6|Ugt1a7	UDP glucuronosyltransferase 1 family, polypeptide A6A	protein-coding	0.015000	0.492537	
mm_24800.1	chr3	95550010	95550210	+	1	NA	NA	NA	-9567	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.010000	0.462687	
mm_56179.1	chr6	88166067	88166267	-	1	NA	NA	NA	-32497	NM_008090	14461	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.030000	0.542289	
mm_153539.1	chr19	41964503	41964703	-	1	NA	NA	NA	16533	NM_028152	72199	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	0.025000	0.437811	
mm_68152.1	chr7	102250229	102250429	-	1	NA	NA	NA	-211	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.035000	0.626866	
mm_58500.1	chr7	3705627	3705827	+	1	NA	NA	NA	1686	NM_029767	76846	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	0.025000	0.557214	
mm_106621.1	chr11	120821104	120821304	-	1	NA	NA	NA	3343	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.000000	0.572139	
mm_98822.1	chr11	97362194	97362394	+	1	NA	NA	NA	-257	NM_138657	192157	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.140000	0.820896	1(CCCTCTATGAGG,-,0.00)
mm_134769.1	chr16	23520708	23520908	-	1	NA	NA	NA	-218	NM_008555	17174	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0.005000	0.537313	
mm_31024.1	chr4	40769432	40769632	+	1	NA	NA	NA	-11647	NM_021535	74255	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.010000	0.522388	
mm_151163.1	chr19	53194402	53194602	+	1	NA	NA	NA	50505	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.025000	0.502488	
mm_85434.1	chr9	103761734	103761934	-	1	NA	NA	NA	3	NM_178638	81907	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding	0.170000	0.771144	
mm_151267.1	chr19	54045648	54045848	+	1	NA	NA	NA	566	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	0.050000	0.537313	-33(GGGTATAAGAAG,-,0.00)
mm_154714.1	chrX	9104514	9104714	+	1	NA	NA	NA	52	NM_001270700	75775	Mm.50374	NM_001270700	ENSMUSG00000045797	4930402K13Rik	-	RIKEN cDNA 4930402K13 gene	protein-coding	0.035000	0.552239	
mm_154559.1	chrX	4136206	4136406	+	1	NA	NA	NA	-60270	NM_001085543	627264	Mm.457960	NM_001085543	ENSMUSG00000094307	Btbd35f28	Gm14347|OTTMUSG00000016407	BTB domain containing 35, family member 28	protein-coding	0.035000	0.497512	
mm_116052.1	chr13	27436976	27437176	-	1	NA	NA	NA	1612	NM_001271379	19112	Mm.142728	NM_011167	ENSMUSG00000021345	Prl8a6	Ghd13|PLP-C1|PLP-Ca|PLP-calpha|Prlpc|Prlpc1	prolactin family 8, subfamily a, member 6	protein-coding	0.000000	0.407960	
mm_150248.1	chr19	34100869	34101069	+	1	NA	NA	NA	26	NM_023903	78753	Mm.195937	NM_023903	ENSMUSG00000056078	Lipm	4632427C23Rik|AW227514|Lipl3	lipase, family member M	protein-coding	0.005000	0.407960	
mm_159967.1	chr6	92567275	92567475	-	1	NA	NA	NA	-9	NM_001134461	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.015000	0.482587	
mm_98330.1	chr11	90638118	90638318	+	1	NA	NA	NA	34	NM_199008	69802	Mm.151940	NM_199008	ENSMUSG00000020544	Cox11	2010004I09Rik	cytochrome c oxidase assembly protein 11	protein-coding	0.090000	0.696517	
mm_32885.1	chr4	118961769	118961969	+	1	NA	NA	NA	-98	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.010000	0.522388	
mm_48390.1	chr5	139813944	139814144	-	1	NA	NA	NA	239	NM_001161548	231832	Mm.482655	NM_144914	ENSMUSG00000036687	Tmem184a	Sdmg1	transmembrane protein 184a	protein-coding	0.040000	0.641791	
mm_50488.1	chr6	48988668	48988868	+	1	NA	NA	NA	1907	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.010000	0.487562	
mm_16567.1	chr2	3366506	3366706	-	1	NA	NA	NA	-37	NM_145921	99035	Mm.13808	NM_145921	ENSMUSG00000026645	Olah	AI607300|E230009B14Rik|Thedc1	oleoyl-ACP hydrolase	protein-coding	0.030000	0.517413	
mm_8700.1	chr1	158356234	158356434	-	1	NA	NA	NA	-74	NM_207583	240843	Mm.329579	NM_207583	ENSMUSG00000004031	Brinp2	6430517E21Rik|BB361039|Fam5b|mKIAA1747	bone morphogenic protein/retinoic acid inducible neural-specific 2	protein-coding	0.040000	0.572139	
mm_143042.1	chr17	56794615	56794815	-	1	NA	NA	NA	24439	NM_001195673	100504446	Mm.46157	NM_001195673	ENSMUSG00000090273	Prr22	Gm546	proline rich 22	protein-coding	0.000000	0.343284	75(TTCTTTAAATGC,-,0.00)
mm_59153.1	chr7	24370091	24370291	+	1	NA	NA	NA	-72	NM_001163510	16534	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0.020000	0.601990	
mm_115707.1	chr13	14523031	14523231	-	1	NA	NA	NA	95	NM_001081348	94253	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.030000	0.597015	
mm_9335.1	chr1	172004191	172004391	-	1	NA	NA	NA	23004	NM_033509	93840	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	vang-like 2 (van gogh, Drosophila)	protein-coding	0.010000	0.517413	
mm_109879.1	chr12	4918091	4918291	-	1	NA	NA	NA	838	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.030000	0.517413	
mm_130073.1	chr15	89355562	89355762	-	1	NA	NA	NA	-3	NM_178919	105847	Mm.34511	NM_178919	ENSMUSG00000022614	Lmf2	AI451006|Tmem112b|Tmem153	lipase maturation factor 2	protein-coding	0.085000	0.656716	
mm_143982.1	chr17	87473702	87473902	-	1	NA	NA	NA	-26867	NM_007589	12314	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017	calmodulin 2	protein-coding	0.025000	0.621891	-34(GCCCCTATGAGG,-,0.00)
mm_98580.1	chr11	95716166	95716366	+	1	NA	NA	NA	-3512	NR_045780	432396	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	0.025000	0.452736	
mm_153981.1	chr19	47900579	47900779	-	1	NA	NA	NA	18620	NM_001001738	414801	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER|mKIAA1754	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	0.025000	0.542289	
mm_25323.1	chr3	106547755	106547955	+	1	NA	NA	NA	-53	NM_133869	99712	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.070000	0.641791	
mm_97632.1	chr11	78959794	78959994	+	1	NA	NA	NA	25030	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.005000	0.557214	
mm_158217.1	chrX	105928465	105928665	-	1	NA	NA	NA	807	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.055000	0.701493	
mm_80203.1	chr9	72437901	72438101	+	1	NA	NA	NA	-528	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.045000	0.537313	
mm_22122.1	chr2	170193949	170194149	-	1	NA	NA	NA	-51374	NM_001159683	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.015000	0.517413	
mm_166816.1	chr7	17073970	17074170	+	1	NA	NA	NA	30	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.015000	0.497512	
mm_14688.1	chr2	140395356	140395556	+	1	NA	NA	NA	21	NM_028387	72899	Mm.229466	NM_028387	ENSMUSG00000068205	Macrod2	1110033L15Rik|2610107G07Rik|2900006F19Rik	MACRO domain containing 2	protein-coding	0.135000	0.761194	
mm_146665.1	chr18	12190899	12191099	-	1	NA	NA	NA	22269	NM_029623	76482	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1	RIKEN cDNA 3110002H16 gene	protein-coding	0.030000	0.462687	
mm_104431.1	chr11	94951423	94951623	-	1	NA	NA	NA	15299	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.035000	0.537313	
mm_24714.1	chr3	95228694	95228894	+	1	NA	NA	NA	-117	NM_019914	56772	Mm.331208	NM_019914	ENSMUSG00000053192	Mllt11	AI839562|Af1q|Zfp692	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11	protein-coding	0.135000	0.766169	
mm_71205.1	chr8	40889432	40889632	+	1	NA	NA	NA	27165	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.005000	0.437811	
mm_74935.1	chr8	25785127	25785327	-	1	NA	NA	NA	-18	NM_026121	67384	Mm.118400	NM_026121	ENSMUSG00000037316	Bag4	2410112I15Rik|SODD	BCL2-associated athanogene 4	protein-coding	0.140000	0.741294	
mm_110784.1	chr12	71113989	71114189	-	1	NA	NA	NA	2661	NM_029227	75266	Mm.402075	NM_029227	ENSMUSG00000021078	Tomm20l	4930553D19Rik	translocase of outer mitochondrial membrane 20 homolog (yeast)-like	protein-coding	0.040000	0.572139	
mm_85310.1	chr9	101071051	101071251	-	1	NA	NA	NA	-3611	NM_001100451	77853	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	male-specific lethal 2 homolog (Drosophila)	protein-coding	0.010000	0.378109	-21(GCTTATAAAGAT,+,0.00)
mm_142630.1	chr17	47400492	47400692	-	1	NA	NA	NA	14	NM_008189	14913	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	0.035000	0.532338	-31(CTTTTAATACCG,+,0.00)
mm_104270.1	chr11	89060648	89060848	-	1	NA	NA	NA	0	NM_019505	56077	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	0.110000	0.716418	
mm_397.1	chr1	34121350	34121550	+	1	NA	NA	NA	4091	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.020000	0.507463	
mm_149676.1	chr19	20405186	20405386	+	1	NA	NA	NA	-2	NR_045817	68994	Mm.261028	NM_183277	ENSMUSG00000094732	1500015L24Rik	-	RIKEN cDNA 1500015L24 gene	ncRNA	0.005000	0.457711	37(TTCTCTAAAAGG,-,0.00)
mm_123197.1	chr14	59178665	59178865	-	1	NA	NA	NA	-16	NM_001004158	380907	Mm.81009	NM_001004158	ENSMUSG00000053868	Gm5142	EG380907	predicted gene 5142	protein-coding	0.005000	0.512438	37(GGCTCTTTAGGG,-,0.00)
mm_110171.1	chr12	27336378	27336578	-	1	NA	NA	NA	6240	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.015000	0.537313	
mm_130837.1	chr15	101849025	101849225	-	1	NA	NA	NA	1661	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.010000	0.497512	-83(GCCTTTAGACCC,+,0.00)
mm_100978.1	chr11	7207099	7207299	-	1	NA	NA	NA	6724	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding	0.025000	0.492537	
mm_58846.1	chr7	16842963	16843163	+	1	NA	NA	NA	-2	NM_178900	101540	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.075000	0.626866	
mm_55777.1	chr6	81841347	81841547	-	1	NA	NA	NA	54216	NR_106091	102465711		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0.015000	0.497512	
mm_130376.1	chr15	97831390	97831590	-	1	NA	NA	NA	277	NM_019572	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.080000	0.716418	
mm_44423.1	chr5	20881919	20882119	-	1	NA	NA	NA	105	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.170000	0.776119	
mm_120072.1	chr14	57217113	57217313	+	1	NA	NA	NA	-83602	NM_001010937	14623	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	0.020000	0.462687	
mm_66677.1	chr7	45759433	45759633	-	1	NA	NA	NA	22	NM_017465	54200	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	0.090000	0.781095	
mm_121592.1	chr14	7967314	7967514	-	1	NA	NA	NA	26768	NM_007870	13421	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.010000	0.552239	
mm_98572.1	chr11	95480369	95480569	+	1	NA	NA	NA	34096	NM_130858	104079	Mm.22970	NM_130858	ENSMUSG00000046719	Nxph3	-	neurexophilin 3	protein-coding	0.000000	0.338308	
mm_122679.1	chr14	52010756	52010956	-	1	NA	NA	NA	3702	NM_001253695	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.025000	0.587065	
mm_37698.1	chr4	129335154	129335354	-	1	NA	NA	NA	116	NM_009030	19646	Mm.12145	NM_009030	ENSMUSG00000057236	Rbbp4	RBAP48|mRbAp48	retinoblastoma binding protein 4	protein-coding	0.105000	0.701493	
mm_46329.1	chr5	100846011	100846211	-	1	NA	NA	NA	-118	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|Gpat3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding	0.095000	0.651741	
mm_106345.1	chr11	118393284	118393484	-	1	NA	NA	NA	8547	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.015000	0.507463	
mm_117504.1	chr13	78200256	78200456	-	1	NA	NA	NA	-1483	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.030000	0.502488	
mm_65677.1	chr7	28318788	28318988	-	1	NA	NA	NA	-6842	NM_025616	66525	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	0.040000	0.601990	-39(GAGTCTAAAGGG,-,0.00)
mm_3220.1	chr1	135846613	135846813	+	1	NA	NA	NA	5852	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.000000	0.572139	
mm_762.1	chr1	43983086	43983286	+	1	NA	NA	NA	36820	NM_001013799	433294	Mm.123621	NM_001013799	ENSMUSG00000047343	Mettl21c	A530098C11Rik	methyltransferase like 21C	protein-coding	0.020000	0.368159	
mm_171341.1	chr4	102882507	102882707	-	1	NA	NA	NA	-103772	NM_001163767	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.030000	0.487562	
mm_93066.1	chr10	89257489	89257689	-	1	NA	NA	NA	201	NM_001277188	320091	Mm.236464	NM_178773	ENSMUSG00000035189	Ano4	A330096O15Rik|Gm65|Tmem16d	anoctamin 4	protein-coding	0.035000	0.557214	
mm_138007.1	chr17	33824806	33825006	+	1	NA	NA	NA	261	NR_103514	66416	Mm.29513	NM_023202	ENSMUSG00000041881	Ndufa7	14.5kDa|2400007M02Rik|CI-B14.5a	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	protein-coding	0.030000	0.502488	
mm_77179.1	chr8	111718499	111718699	-	1	NA	NA	NA	13537	NM_001198839	12927	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0.010000	0.343284	
mm_8151.1	chr1	136608385	136608585	-	1	NA	NA	NA	-16416	NM_177643	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.005000	0.472637	26(GGCCTTAAGAGC,-,0.00)
mm_124154.1	chr14	93202131	93202331	-	1	NA	NA	NA	686657	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.005000	0.383085	
mm_151815.1	chr19	5488984	5489184	-	1	NA	NA	NA	-748	NM_027877	71711	Mm.27697	NM_027877	ENSMUSG00000024906	Mus81	1200008A18Rik|AI182501|AW045863	MUS81 structure-specific endonuclease subunit	protein-coding	0.050000	0.567164	-34(CTCCTTATAAGG,-,0.00),-32(CCTTATAAGGCT,+,0.00)
mm_82458.1	chr9	15627802	15628002	-	1	NA	NA	NA	31	NM_181816	234964	Mm.32237	NM_181816	ENSMUSG00000039977	Ccdc67	4933401K09Rik|Deup1	coiled-coil domain containing 67	protein-coding	0.070000	0.686567	
mm_135271.1	chr16	38396112	38396312	-	1	NA	NA	NA	34022	NM_022318	64082	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.020000	0.373134	
mm_154842.1	chrX	20364486	20364686	+	1	NA	NA	NA	105	NR_110967	19889	Mm.288141	NM_133669	ENSMUSG00000060090	Rp2	AI662636|Rp2h	retinitis pigmentosa 2 homolog	protein-coding	0.060000	0.666667	
mm_73877.1	chr8	119277335	119277535	+	1	NA	NA	NA	-67103	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.010000	0.552239	
mm_126127.1	chr15	78333956	78334156	+	1	NA	NA	NA	8066	NM_007780	12983	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.005000	0.353234	
mm_65649.1	chr7	28115238	28115438	-	1	NA	NA	NA	-14128	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.015000	0.462687	
mm_158665.1	chrX	157492210	157492410	-	1	NA	NA	NA	-264	NM_009214	20603	Mm.18652	NM_009214	ENSMUSG00000071708	Sms	AI427066|Gy|SPMSY|SpmST|gyro	spermine synthase	protein-coding	0.065000	0.631841	
mm_88548.1	chr10	78591578	78591778	+	1	NA	NA	NA	286	NM_027875	71709	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	0.045000	0.641791	
mm_96242.1	chr11	62554577	62554777	+	1	NA	NA	NA	2946	NM_001313984	22187	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.005000	0.417910	
mm_144770.1	chr18	35795417	35795617	+	1	NA	NA	NA	23958	NM_019912	56550	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0.000000	0.388060	
mm_40931.1	chr5	76588603	76588803	+	1	NA	NA	NA	-3011	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.150000	0.766169	
mm_71797.1	chr8	67956452	67956652	+	1	NA	NA	NA	18022	NM_177698	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.000000	0.383085	-66(CCTTTAATAACT,+,0.00),-32(GCTTTTAGACTG,+,0.00)
mm_129158.1	chr15	76242523	76242723	-	1	NA	NA	NA	817	NM_001163576	671535	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0.030000	0.616915	
mm_127474.1	chr15	101273048	101273248	+	1	NA	NA	NA	6302	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.020000	0.577114	
mm_141281.1	chr17	27907638	27907838	-	1	NA	NA	NA	-14	NM_026836	68776	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|28kDa|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	0.095000	0.646766	
mm_97113.1	chr11	74665258	74665458	+	1	NA	NA	NA	15863	NM_001081158	74148	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.000000	0.552239	
mm_36388.1	chr4	77168729	77168929	-	1	NA	NA	NA	1043066	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.015000	0.447761	
mm_76241.1	chr8	83583280	83583480	-	1	NA	NA	NA	11111	NM_027179	106529	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	0.050000	0.582090	
mm_153124.1	chr19	33966816	33967016	-	1	NA	NA	NA	5668	NM_026334	67717	Mm.329816	NM_026334	ENSMUSG00000024768	Lipf	2310051B21Rik|AV082900	lipase, gastric	protein-coding	0.005000	0.432836	
mm_39803.1	chr5	30623100	30623300	+	1	NA	NA	NA	-24736	NR_049199	100885838		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.025000	0.582090	
mm_98076.1	chr11	86484625	86484825	+	1	NA	NA	NA	68	NM_029788	76892	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0.135000	0.741294	
mm_129991.1	chr15	86160434	86160634	-	1	NA	NA	NA	25607	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.000000	0.368159	
mm_140461.1	chr17	90179195	90179395	+	1	NA	NA	NA	-90927	NM_001347419	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.000000	0.313433	
mm_33649.1	chr4	133039418	133039618	+	1	NA	NA	NA	28012	NM_146155	230793	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.130000	0.746269	
mm_38502.1	chr4	141113578	141113778	-	1	NA	NA	NA	25333	NM_177867	329972	Mm.247201	NM_177867	ENSMUSG00000045004	Spata21	4933414G08	spermatogenesis associated 21	protein-coding	0.000000	0.407960	
mm_70011.1	chr7	142443545	142443745	-	1	NA	NA	NA	1177	NM_009405	21953	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	0.020000	0.582090	
mm_31818.1	chr4	66841744	66841944	+	1	NA	NA	NA	14293	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.005000	0.343284	
mm_50861.1	chr6	55336021	55336221	+	1	NA	NA	NA	-178	NM_007472	11826	Mm.18625	NM_007472	ENSMUSG00000004655	Aqp1	CHIP28	aquaporin 1	protein-coding	0.025000	0.606965	51(GCCTATTAGAGC,-,0.00)
mm_100706.1	chr11	3648906	3649106	-	1	NA	NA	NA	-192	NR_002321	544752	Mm.390314	NR_002321	ENSMUSG00000056579	Tug1	AI316828	taurine upregulated gene 1	ncRNA	0.085000	0.676617	-48(GGCCATTTAAAG,-,0.00),-46(CCATTTAAAGGA,+,0.00)
mm_2638.1	chr1	121706419	121706619	+	1	NA	NA	NA	-138539	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	0.010000	0.462687	
mm_99465.1	chr11	102435616	102435816	+	1	NA	NA	NA	5394	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.000000	0.562189	
mm_157077.1	chrX	9256809	9257009	-	1	NA	NA	NA	-15875	NM_023500	22439	Mm.56468	NM_023500	ENSMUSG00000015342	Xk	1810038K19Rik|XRG1|Xkh	X-linked Kx blood group	protein-coding	0.005000	0.467662	
mm_142724.1	chr17	48167103	48167303	-	1	NA	NA	NA	54	NM_001113556	328830	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0.010000	0.537313	
mm_17432.1	chr2	27507542	27507742	-	1	NA	NA	NA	-7505	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.015000	0.572139	
mm_78607.1	chr9	37544901	37545101	+	1	NA	NA	NA	5746	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.065000	0.512438	
mm_127437.1	chr15	101270204	101270404	+	1	NA	NA	NA	3458	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.060000	0.616915	
mm_49848.1	chr6	38354818	38355018	+	1	NA	NA	NA	-315	NM_028421	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.035000	0.492537	-32(CCCTCTTAGAGG,-,0.00),-31(CCTCTTAGAGGG,+,0.00)
mm_145552.1	chr18	60810289	60810489	+	1	NA	NA	NA	-1687	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.030000	0.547264	
mm_119014.1	chr14	29978329	29978529	+	1	NA	NA	NA	92	NM_027493	56249	Mm.215110	NM_027493	ENSMUSG00000015971	Actr8	5730542K05Rik|ARP8	ARP8 actin-related protein 8	protein-coding	0.085000	0.681592	
mm_52726.1	chr6	120093276	120093476	+	1	NA	NA	NA	-4	NM_016718	29862	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.030000	0.557214	
mm_133183.1	chr16	72662938	72663138	+	1	NA	NA	NA	-111	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.055000	0.557214	49(CCCCTTTAAAGG,-,0.00),50(CCCTTTAAAGGT,+,0.00),50(CCCTTTAAAGGT,-,0.00),51(CCTTTAAAGGTT,+,0.00)
mm_165476.1	chr2	164333232	164333432	+	1	NA	NA	NA	567	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.030000	0.472637	
mm_143418.1	chr17	70841999	70842199	-	1	NA	NA	NA	4678	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.005000	0.482587	
mm_27352.1	chr3	50417065	50417265	-	1	NA	NA	NA	26448	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.318408	
mm_173016.1	chrX	100294675	100294875	+	1	NA	NA	NA	-86322	NR_030525	751534		NR_030525	ENSMUSG00000076398	Mir676	Mirn676|mir-676|mmu-mir-676	microRNA 676	ncRNA	0.050000	0.587065	
mm_28599.1	chr3	94572519	94572719	-	1	NA	NA	NA	10097	NM_001082484	76742	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.015000	0.477612	5(CCTTTTAGACCT,+,0.00)
mm_46283.1	chr5	100159313	100159513	-	1	NA	NA	NA	395	NM_182841	231503	Mm.99790	NM_182841	ENSMUSG00000050640	Tmem150c	-	transmembrane protein 150C	protein-coding	0.115000	0.751244	
mm_168563.1	chr1	169174621	169174821	+	1	NA	NA	NA	356743	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0.040000	0.512438	
mm_152582.1	chr19	11603147	11603347	-	1	NA	NA	NA	1557	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.005000	0.472637	
mm_17712.1	chr2	32385891	32386091	-	1	NA	NA	NA	1748	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.010000	0.522388	
mm_51201.1	chr6	71322660	71322860	+	1	NA	NA	NA	-52	NM_009858	12526	Mm.333148	NM_009858	ENSMUSG00000053044	Cd8b1	Cd8b|Ly-3|Ly-C|Lyt-3	CD8 antigen, beta chain 1	protein-coding	0.030000	0.572139	
mm_88401.1	chr10	76595888	76596088	+	1	NA	NA	NA	20340	NM_080845	14317	Mm.36278	NM_080845	ENSMUSG00000001155	Ftcd	-	formiminotransferase cyclodeaminase	protein-coding	0.000000	0.547264	
mm_54175.1	chr6	23655055	23655255	-	1	NA	NA	NA	-19	NM_027754	71300	Mm.443309	NM_027754	ENSMUSG00000078179	Rnf148	4933432M07Rik|Greul3	ring finger protein 148	protein-coding	0.000000	0.328358	
mm_3226.1	chr1	135848727	135848927	+	1	NA	NA	NA	7966	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.050000	0.606965	
mm_103392.1	chr11	75422498	75422698	-	1	NA	NA	NA	25	NM_011340	20317	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.015000	0.522388	
mm_106338.1	chr11	118393027	118393227	-	1	NA	NA	NA	8804	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.015000	0.557214	
mm_133990.1	chr16	4635333	4635533	-	1	NA	NA	NA	-4512	NM_139307	246154	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0.010000	0.577114	
mm_11175.1	chr2	28699703	28699903	+	1	NA	NA	NA	-152	NM_027283	69987	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	0.050000	0.601990	
mm_134274.1	chr16	13986847	13987047	-	1	NA	NA	NA	-80	NM_001270718	74482	Mm.484026	NM_028968	ENSMUSG00000065968	Ifitm7	4933438K12Rik|Mil4	interferon induced transmembrane protein 7	protein-coding	0.055000	0.636816	
mm_30543.1	chr4	3679087	3679287	+	1	NA	NA	NA	1066	NM_010747	17096	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.020000	0.432836	
mm_95202.1	chr11	43474162	43474362	+	1	NA	NA	NA	-44	NM_026979	69183	Mm.390374	NM_026979	ENSMUSG00000046491	C1qtnf2	1810033K05Rik|CTRP2	C1q and tumor necrosis factor related protein 2	protein-coding	0.065000	0.601990	
mm_156996.1	chrX	7429547	7429747	-	1	NA	NA	NA	-6659	NR_027924	68355	Mm.45111	NR_027924		2010204K13Rik	0610010M13Rik|Cip7	RIKEN cDNA 2010204K13 gene	ncRNA	0.020000	0.482587	
mm_49407.1	chr6	28480254	28480454	+	1	NA	NA	NA	6	NM_019776	56463	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.090000	0.616915	
mm_89716.1	chr10	98880267	98880467	+	1	NA	NA	NA	-34785	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.015000	0.502488	
mm_39763.1	chr5	30013175	30013375	+	1	NA	NA	NA	161	NM_031168	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.025000	0.547264	
mm_73611.1	chr8	110089935	110090135	+	1	NA	NA	NA	10301	NM_175480	234725	Mm.87487	NM_175480	ENSMUSG00000044676	Zfp612	B230354B21Rik	zinc finger protein 612	protein-coding	0.020000	0.452736	
mm_28615.1	chr3	94886851	94887051	-	1	NA	NA	NA	7	NM_008945	19172	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	0.060000	0.587065	-88(GGCTTTATAAAT,-,0.00)
mm_148296.1	chr18	82585411	82585611	-	1	NA	NA	NA	31003	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.035000	0.472637	
mm_49637.1	chr6	30804973	30805173	+	1	NA	NA	NA	63774	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.517413	
mm_77280.1	chr8	116711389	116711589	-	1	NA	NA	NA	21502	NM_029441	75796	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.000000	0.303483	
mm_161929.1	chr18	80364207	80364407	-	1	NA	NA	NA	-53	NM_001190373	240444	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.025000	0.507463	
mm_127975.1	chr15	12321219	12321419	-	1	NA	NA	NA	-177	NM_025673	66629	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.115000	0.696517	
mm_156283.1	chrX	136837138	136837338	+	1	NA	NA	NA	14492	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.010000	0.348259	
mm_163320.1	chr12	7977636	7977836	+	1	NA	NA	NA	59	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.040000	0.636816	
mm_140216.1	chr17	83827004	83827204	+	1	NA	NA	NA	19686	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.005000	0.442786	
mm_150871.1	chr19	45055201	45055401	+	1	NA	NA	NA	7725	NM_001178013	94280	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.005000	0.547264	-67(AGCTCTAAAAGC,-,0.00)
mm_21140.1	chr2	154216155	154216355	-	1	NA	NA	NA	-7487	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.020000	0.412935	
mm_142865.1	chr17	51814197	51814397	-	1	NA	NA	NA	-2243	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.020000	0.373134	-95(CGCTTTAAAGAG,-,0.00),-94(GCTTTAAAGAGC,+,0.00),-36(TGCTTTAAAAAA,-,0.00)
mm_124433.1	chr14	118368467	118368667	-	1	NA	NA	NA	2689	NR_045624	73306	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	0.000000	0.552239	
mm_18668.1	chr2	70825498	70825698	-	1	NA	NA	NA	-118	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.170000	0.805970	
mm_126289.1	chr15	79346513	79346713	+	1	NA	NA	NA	-8	NM_001304830	17133	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.015000	0.537313	
mm_59067.1	chr7	19488956	19489156	+	1	NA	NA	NA	19275	NM_177692	232946	Mm.64557	NM_177692	ENSMUSG00000057667	Bloc1s3	BC043666|Blos3|E230011O18|rp	biogenesis of lysosomal organelles complex-1, subunit 3	protein-coding	0.030000	0.587065	
mm_93556.1	chr10	116473301	116473501	-	1	NA	NA	NA	122	NM_021452	58802	Mm.440652	NM_021452	ENSMUSG00000054934	Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding	0.085000	0.606965	
mm_117175.1	chr13	63272561	63272761	-	1	NA	NA	NA	24486	NR_045794	100504114	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	0.045000	0.567164	
mm_101481.1	chr11	30986211	30986411	-	1	NA	NA	NA	54	NM_026527	68044	Mm.32656	NM_026527	ENSMUSG00000020309	Chac2	-	ChaC, cation transport regulator 2	protein-coding	0.050000	0.601990	
mm_142175.1	chr17	36257764	36257964	-	1	NA	NA	NA	-18	NM_026308	67676	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0.065000	0.661692	
mm_152241.1	chr19	8713283	8713483	-	1	NA	NA	NA	514	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.085000	0.636816	
mm_48148.1	chr5	137150784	137150984	-	1	NA	NA	NA	-34677	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.512438	
mm_129928.1	chr15	84482754	84482954	-	1	NA	NA	NA	-35757	NM_001163145	72301	Mm.275387	NM_001163145	ENSMUSG00000062760	1810041L15Rik	Kiaa1644	RIKEN cDNA 1810041L15 gene	protein-coding	0.015000	0.601990	
mm_17674.1	chr2	32236285	32236485	-	1	NA	NA	NA	-298	NM_145145	99011	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0.070000	0.527363	
mm_66776.1	chr7	46861084	46861284	-	1	NA	NA	NA	-79	NM_013580	16833	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	0.040000	0.532338	
mm_141421.1	chr17	29435353	29435553	-	1	NA	NA	NA	-55592	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.015000	0.507463	
mm_152252.1	chr19	8723127	8723327	-	1	NA	NA	NA	142	NM_001161413	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.090000	0.552239	
mm_4083.1	chr1	167000707	167000907	+	1	NA	NA	NA	-610	NM_175461	226610	Mm.389217	NM_175461	ENSMUSG00000060568	Fam78b	C030014K22Rik|C030020L09Rik	family with sequence similarity 78, member B	protein-coding	0.095000	0.726368	-75(CCCTTTAAACAC,+,0.00)
mm_162451.1	chr1	124279104	124279304	+	1	NA	NA	NA	-233645	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.462687	
mm_80982.1	chr9	103219750	103219950	+	1	NA	NA	NA	10436	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.020000	0.517413	
mm_70667.1	chr8	14888856	14889056	+	1	NA	NA	NA	420	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.070000	0.636816	
mm_139328.1	chr17	48932284	48932484	+	1	NA	NA	NA	-198	NM_027452	70530	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0.015000	0.572139	
mm_141471.1	chr17	30612468	30612668	-	1	NA	NA	NA	91	NM_025374	109801	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding	0.050000	0.646766	
mm_75013.1	chr8	28829334	28829534	-	1	NA	NA	NA	390202	NM_001347499	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 netrin receptor D	protein-coding	0.000000	0.373134	
mm_16278.1	chr2	173737543	173737743	+	1	NA	NA	NA	72	NM_019806	56491	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.160000	0.756219	
mm_88003.1	chr10	67096251	67096451	+	1	NA	NA	NA	637	NM_001204915	28193	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.145000	0.726368	
mm_109689.1	chr12	113142772	113142972	+	1	NA	NA	NA	2267	NM_001347443	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.025000	0.626866	
mm_138271.1	chr17	34604738	34604938	+	1	NA	NA	NA	-1023	NM_001163379	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.025000	0.512438	
mm_20061.1	chr2	120352891	120353091	-	1	NA	NA	NA	142	NM_178851	269338	Mm.246131	NM_147153	ENSMUSG00000027291	Vps39	A230065P22Rik|AW743070|Vam6|Vam6P|mVam6	VPS39 HOPS complex subunit	protein-coding	0.070000	0.661692	
mm_162671.1	chr10	7458216	7458416	+	1	NA	NA	NA	15161	NM_029975	77777	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	0.010000	0.422886	-70(CCCTTAATAACC,+,0.00)
mm_11087.1	chr2	27885926	27886126	+	1	NA	NA	NA	-399	NM_015734	12831	Mm.7281	NM_015734	ENSMUSG00000026837	Col5a1	AI413331	collagen, type V, alpha 1	protein-coding	0.035000	0.532338	-24(CTCCTTAAAGAG,-,0.00),-22(CCTTAAAGAGAA,+,0.00)
mm_85208.1	chr9	96787773	96787973	-	1	NA	NA	NA	22311	NR_102296	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	0.015000	0.477612	
mm_83257.1	chr9	42428089	42428289	-	1	NA	NA	NA	-28260	NM_001324548	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.025000	0.542289	
mm_146804.1	chr18	20745629	20745829	-	1	NA	NA	NA	675	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.115000	0.711443	
mm_158509.1	chrX	142966570	142966770	-	1	NA	NA	NA	58	NM_019496	56068	Mm.143724	NM_019496	ENSMUSG00000042225	Ammecr1	6230420G18Rik	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	protein-coding	0.070000	0.676617	
mm_40178.1	chr5	36003307	36003507	+	1	NA	NA	NA	110088	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	0.010000	0.248756	
mm_133162.1	chr16	70409756	70409956	+	1	NA	NA	NA	95907	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.000000	0.393035	
mm_59016.1	chr7	19256836	19257036	+	1	NA	NA	NA	14918	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.015000	0.472637	-30(GCATTTAAAGTA,+,0.00)
mm_12016.1	chr2	57372561	57372761	+	1	NA	NA	NA	134279	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.005000	0.437811	
mm_82815.1	chr9	30922458	30922658	-	1	NA	NA	NA	-106	NM_001024139	235130	Mm.65867	NM_001024139	ENSMUSG00000033453	Adamts15	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15	protein-coding	0.080000	0.631841	-32(CCTTTAATAGGC,+,0.00)
mm_59693.1	chr7	28540623	28540823	+	1	NA	NA	NA	-162	NM_026716	68416	Mm.25210	NM_026716	ENSMUSG00000084174	Sycn	0910001K16Rik|1810038B08Rik|SYL	syncollin	protein-coding	0.020000	0.522388	
mm_65607.1	chr7	27446633	27446833	-	1	NA	NA	NA	-144	NM_032610	80297	Mm.459123	NM_032610	ENSMUSG00000011751	Sptbn4	1700022P15Rik|5830426A08Rik|ROSA62|SpbIV|Spnb4|dyn|lnd|nmf261|nmf379|qv	spectrin beta, non-erythrocytic 4	protein-coding	0.110000	0.691542	
mm_147081.1	chr18	35627114	35627314	-	1	NA	NA	NA	13	NM_011397	20522	Mm.22702	NM_011397	ENSMUSG00000024354	Slc23a1	D18Ucla2|SVCT1|Slc23a2|YSPL3	solute carrier family 23 (nucleobase transporters), member 1	protein-coding	0.025000	0.512438	
mm_161465.1	chr15	78119057	78119257	-	1	NA	NA	NA	123	NM_007583	12300	Mm.277338	NM_007583	ENSMUSG00000019146	Cacng2	AW060990|B230105C07Rik|B930041E13Rik|stargazer|stargazin|stg|wag|waggler	calcium channel, voltage-dependent, gamma subunit 2	protein-coding	0.015000	0.402985	
mm_66141.1	chr7	31126621	31126821	-	1	NA	NA	NA	302	NM_011322	20266	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	0.160000	0.810945	
mm_159824.1	chr5	123510519	123510719	+	1	NA	NA	NA	159	NM_198611	231727	Mm.484068	NM_198611	ENSMUSG00000029431	B3gnt4	1010001G17Rik|BGnT-4	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4	protein-coding	0.015000	0.587065	
mm_120658.1	chr14	70536116	70536316	+	1	NA	NA	NA	5395	NM_145219	213469	Mm.41708	NM_145219	ENSMUSG00000033595	Lgi3	AI841179|AW049851	leucine-rich repeat LGI family, member 3	protein-coding	0.030000	0.587065	
mm_103920.1	chr11	83592461	83592661	-	1	NA	NA	NA	526	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.005000	0.422886	
mm_140505.1	chr17	5406548	5406748	-	1	NA	NA	NA	12119	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.025000	0.532338	-73(GACCTTTTAGGG,-,0.00),-71(CCTTTTAGGGAA,+,0.00)
mm_133604.1	chr16	91485030	91485230	+	1	NA	NA	NA	-85	NM_010508	15975	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	CD118|Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.090000	0.676617	
mm_38685.1	chr4	145103677	145103877	-	1	NA	NA	NA	86889	NM_001276502	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.000000	0.388060	
mm_4741.1	chr1	181860794	181860994	+	1	NA	NA	NA	-18493	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.015000	0.517413	
mm_116227.1	chr13	33034557	33034757	-	1	NA	NA	NA	7243	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	0.000000	0.323383	
mm_163706.1	chr13	108326463	108326663	+	1	NA	NA	NA	10226	NM_178683	218581	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.040000	0.577114	
mm_69955.1	chr7	142373652	142373852	-	1	NA	NA	NA	-6	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.005000	0.567164	
mm_102236.1	chr11	54962774	54962974	-	1	NA	NA	NA	66	NM_021327	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.030000	0.587065	
mm_2132.1	chr1	88055417	88055617	+	1	NA	NA	NA	106	NM_201641	394430	Mm.300095	NM_201641	ENSMUSG00000090165	Ugt1a10	A13|Ugt1a13	UDP glycosyltransferase 1 family, polypeptide A10	protein-coding	0.010000	0.532338	
mm_80882.1	chr9	99183476	99183676	+	1	NA	NA	NA	-43365	NM_029094	74769	Mm.213128	NM_029094	ENSMUSG00000032462	Pik3cb	1110001J02Rik|AI447572|p110beta	phosphatidylinositol 3-kinase, catalytic, beta polypeptide	protein-coding	0.010000	0.487562	
mm_135179.1	chr16	35939650	35939850	-	1	NA	NA	NA	-723	NM_001013371	209200	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0.025000	0.457711	-94(CCTTTTATATAG,+,0.00),-92(TTTTATATAGGC,+,0.00)
mm_146128.1	chr18	74531142	74531342	+	1	NA	NA	NA	-118	NR_045368	73606	Mm.444734	NR_045368		1700120E14Rik	-	RIKEN cDNA 1700120E14 gene	ncRNA	0.035000	0.552239	-17(CCCTATAAAGGA,+,0.00),-17(CCCTATAAAGGA,-,0.00)
mm_119965.1	chr14	55478791	55478991	+	1	NA	NA	NA	133	NM_030686	28200	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	0.040000	0.601990	
mm_26492.1	chr3	145292606	145292806	+	1	NA	NA	NA	234	NM_001317733	71355	Mm.235570	NM_027770	ENSMUSG00000028197	Col24a1	5430404K19Rik	collagen, type XXIV, alpha 1	protein-coding	0.020000	0.572139	
mm_163636.1	chr13	59712184	59712384	+	1	NA	NA	NA	0	NM_001167593	238662	Mm.295939	NM_001167593	ENSMUSG00000091311	Spata31d1b	EG238662|Fam75d1b|Gm4934	spermatogenesis associated 31 subfamily D, member 1B	protein-coding	0.000000	0.577114	
mm_21871.1	chr2	165982498	165982698	-	1	NA	NA	NA	-10039	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.010000	0.542289	73(TTGCCTAAAAGC,-,0.00)
mm_163403.1	chr12	74968159	74968359	+	1	NA	NA	NA	209073	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0.005000	0.328358	
mm_90412.1	chr10	127420801	127421001	+	1	NA	NA	NA	34	NM_001168293	71750	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.015000	0.457711	
mm_7755.1	chr1	131098018	131098218	-	1	NA	NA	NA	-275	NM_008551	17164	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.025000	0.502488	
mm_1354.1	chr1	66321876	66322076	+	1	NA	NA	NA	252	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.030000	0.507463	
mm_132399.1	chr16	35001176	35001376	+	1	NA	NA	NA	-21145	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.005000	0.487562	
mm_60155.1	chr7	39517665	39517865	+	1	NA	NA	NA	-1	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.090000	0.651741	-1(TCCCCTTTAAGG,-,0.00),0(CCCCTTTAAGGC,-,0.00),1(CCCTTTAAGGCT,+,0.00),2(CCTTTAAGGCTG,+,0.00)
mm_146181.1	chr18	75424583	75424783	+	1	NA	NA	NA	57318	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.045000	0.572139	
mm_123158.1	chr14	57132443	57132643	-	1	NA	NA	NA	1068	NM_001271663	14623	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	0.025000	0.447761	
mm_120841.1	chr14	75194082	75194282	+	1	NA	NA	NA	-48105	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.020000	0.502488	
mm_137986.1	chr17	33628996	33629196	+	1	NA	NA	NA	4	NM_026712	328801	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	0.065000	0.592040	
mm_57014.1	chr6	121226076	121226276	-	1	NA	NA	NA	15442	NM_017379	53857	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0.005000	0.497512	
mm_56896.1	chr6	119121065	119121265	-	1	NA	NA	NA	-12670	NM_001256002	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.000000	0.398010	
mm_102565.1	chr11	61488204	61488404	-	1	NA	NA	NA	2860	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.010000	0.517413	
mm_91903.1	chr10	60215225	60215425	-	1	NA	NA	NA	3935	NM_016803	53374	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	0.010000	0.597015	
mm_41070.1	chr5	87667151	87667351	+	1	NA	NA	NA	1043	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.020000	0.427861	
mm_92824.1	chr10	81461754	81461954	-	1	NA	NA	NA	11277	NM_001311127	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.005000	0.492537	
mm_92549.1	chr10	79760968	79761168	-	1	NA	NA	NA	5884	NM_144528	70294	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0.015000	0.587065	
mm_109215.1	chr12	108688040	108688240	+	1	NA	NA	NA	14166	NM_001171002	70059	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	0.030000	0.492537	
mm_87560.1	chr10	56106852	56107052	+	1	NA	NA	NA	35	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding	0.030000	0.507463	
mm_66932.1	chr7	61546089	61546289	-	1	NA	NA	NA	69138	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.015000	0.407960	
mm_47761.1	chr5	131472307	131472507	-	1	NA	NA	NA	-164885	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.045000	0.592040	
mm_75251.1	chr8	40495771	40495971	-	1	NA	NA	NA	15883	NM_001271543	18983	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0.005000	0.457711	
mm_66980.1	chr7	63938271	63938471	-	1	NA	NA	NA	544	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.160000	0.761194	
mm_52536.1	chr6	115915716	115915916	+	1	NA	NA	NA	-16111	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.035000	0.567164	-71(TTATTTATAGCC,+,0.00)
mm_20892.1	chr2	148872832	148873032	-	1	NA	NA	NA	2580	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.015000	0.482587	
mm_115410.1	chr13	114803228	114803428	+	1	NA	NA	NA	-14909	NM_013826	17434	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.005000	0.388060	
mm_20565.1	chr2	131081291	131081491	-	1	NA	NA	NA	5374	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.035000	0.567164	
mm_56979.1	chr6	120357271	120357471	-	1	NA	NA	NA	98	NM_026028	67200	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	0.040000	0.487562	
mm_84311.1	chr9	63706323	63706523	-	1	NA	NA	NA	51571	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.005000	0.611940	
mm_96077.1	chr11	59948135	59948335	+	1	NA	NA	NA	21	NM_138675	192191	Mm.125288	NM_138675	ENSMUSG00000061650	Med9	BC019367|Med25	mediator complex subunit 9	protein-coding	0.100000	0.696517	
mm_112101.1	chr12	112785278	112785478	-	1	NA	NA	NA	-23597	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.030000	0.532338	
mm_56934.1	chr6	119818229	119818429	-	1	NA	NA	NA	29821	NM_053204	111173	Mm.288860	NM_053204	ENSMUSG00000030172	Erc1	4930404L01Rik|5033405M01Rik|9630025C19Rik|B430107L16Rik|CAST2|ELKS|Elks1|RAB6IP2A|RAB6IP2B|Rab6ip2|mKIAA1081	ELKS/RAB6-interacting/CAST family member 1	protein-coding	0.010000	0.472637	
mm_159027.1	chr1	173868502	173868702	-	1	NA	NA	NA	11585	NM_001170853	100040462	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	0.005000	0.378109	
mm_135342.1	chr16	42875636	42875836	-	1	NA	NA	NA	26	NR_040522	75722	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	ENSMUSG00000075070|Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	0.050000	0.567164	
mm_34480.1	chr4	148448481	148448681	+	1	NA	NA	NA	-1	NM_020009	56717	Mm.21158	NM_020009	ENSMUSG00000028991	Mtor	2610315D21Rik|AI327068|FRAP|FRAP2|Frap1|RAFT1|RAPT1|flat	mechanistic target of rapamycin (serine/threonine kinase)	protein-coding	0.085000	0.651741	
mm_78769.1	chr9	43311054	43311254	+	1	NA	NA	NA	391	NM_023655	72169	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	0.025000	0.562189	
mm_11946.1	chr2	52899288	52899488	+	1	NA	NA	NA	41520	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.010000	0.427861	
mm_118896.1	chr14	26638036	26638236	+	1	NA	NA	NA	-61	NM_007479	11843	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.165000	0.746269	
mm_158349.1	chrX	134541569	134541769	-	1	NA	NA	NA	1	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.130000	0.736318	
mm_75478.1	chr8	48555317	48555517	-	1	NA	NA	NA	119273	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.130000	0.731343	
mm_13318.1	chr2	102675452	102675652	+	1	NA	NA	NA	16869	NM_001077514	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.010000	0.512438	
mm_112975.1	chr13	21287419	21287619	+	1	NA	NA	NA	5167	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.025000	0.512438	
mm_125859.1	chr15	75216149	75216349	+	1	NA	NA	NA	-52172	NM_008530	17071	Mm.377095	NM_008530	ENSMUSG00000022583	Ly6f	-	lymphocyte antigen 6 complex, locus F	protein-coding	0.005000	0.467662	
mm_40342.1	chr5	45493358	45493558	+	1	NA	NA	NA	84	NM_024434	66988	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0.145000	0.736318	
mm_163419.1	chr12	79758160	79758360	+	1	NA	NA	NA	166473	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.005000	0.293532	
mm_82590.1	chr9	21238861	21239061	-	1	NA	NA	NA	371	NM_016679	50868	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.145000	0.761194	
mm_142574.1	chr17	46680653	46680853	-	1	NA	NA	NA	-30	NM_001277311	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.095000	0.671642	
mm_47806.1	chr5	132756321	132756521	-	1	NA	NA	NA	-214078	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.000000	0.487562	
mm_107693.1	chr12	55384144	55384344	+	1	NA	NA	NA	22	NM_001310583	26443	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.025000	0.507463	
mm_17479.1	chr2	28561139	28561339	-	1	NA	NA	NA	2164	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.020000	0.562189	
mm_38571.1	chr4	141793086	141793286	-	1	NA	NA	NA	-426	NM_015733	12371	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	0.035000	0.482587	
mm_46749.1	chr5	111761612	111761812	-	1	NA	NA	NA	16	NR_045834	269683	Mm.136946	NM_207252	ENSMUSG00000085271	E130006D01Rik	Gm16018|Gm681|OTTMUSG00000029083	RIKEN cDNA E130006D01 gene	ncRNA	0.040000	0.577114	
mm_6576.1	chr1	75216431	75216631	-	1	NA	NA	NA	2763	NM_001313723	22145	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	0.015000	0.532338	
mm_140539.1	chr17	6782654	6782854	-	1	NA	NA	NA	26	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.180000	0.746269	
mm_171382.1	chr4	119520853	119521053	+	1	NA	NA	NA	17816	NM_001004178	433752	Mm.425205	NM_001004178	ENSMUSG00000087385	AA415398	-	expressed sequence AA415398	protein-coding	0.015000	0.472637	
mm_28854.1	chr3	96905183	96905383	-	1	NA	NA	NA	15	NM_026229	67549	Mm.46722	NM_026229	ENSMUSG00000028096	Gpr89	4933412D19Rik|Gpr89a|SH120	G protein-coupled receptor 89	protein-coding	0.065000	0.621891	
mm_70503.1	chr8	12873710	12873910	+	1	NA	NA	NA	-41891	NR_045775	100504249	Mm.441494	NR_045775	ENSMUSG00000084780	Gm15350	OTTMUSG00000020611	predicted gene 15350	ncRNA	0.065000	0.721393	
mm_5445.1	chr1	36063043	36063243	-	1	NA	NA	NA	-5257	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.015000	0.527363	
mm_104638.1	chr11	97523827	97524027	-	1	NA	NA	NA	-23587	NM_001289118	100141474	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.000000	0.597015	
mm_1687.1	chr1	74885674	74885874	+	1	NA	NA	NA	-366	NM_153111	260298	Mm.150496	NM_153111	ENSMUSG00000055197	Fev	Pet-1|Pet1|mPet-1	FEV (ETS oncogene family)	protein-coding	0.030000	0.606965	
mm_31542.1	chr4	55477827	55478027	+	1	NA	NA	NA	54548	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.010000	0.517413	
mm_158519.1	chrX	143792400	143792600	-	1	NA	NA	NA	34912	NM_007603	12338	Mm.30290	NM_007603	ENSMUSG00000067276	Capn6	-	calpain 6	protein-coding	0.000000	0.288557	-70(GTATTTAGAGCC,+,0.00),22(CTCTTTAAAAAA,-,0.00)
mm_52325.1	chr6	108836633	108836833	+	1	NA	NA	NA	8092	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.005000	0.388060	-67(CCTTTTATGGTC,+,0.00)
mm_6255.1	chr1	69041819	69042019	-	1	NA	NA	NA	66140	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	0.000000	0.308458	
mm_55211.1	chr6	52221482	52221682	-	1	NA	NA	NA	-3009	NM_010455	15404	Mm.294826	NM_010455	ENSMUSG00000038236	Hoxa7	AV118143|Hox-1.1|M6	homeobox A7	protein-coding	0.070000	0.641791	
mm_158269.1	chrX	109392080	109392280	-	1	NA	NA	NA	195424	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.015000	0.368159	
mm_72394.1	chr8	81767699	81767899	+	1	NA	NA	NA	425237	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.010000	0.482587	
mm_71058.1	chr8	33732142	33732342	+	1	NA	NA	NA	-97	NM_001167922	68153	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	0.140000	0.701493	52(TCTTTTAGGCCG,+,0.00)
mm_76639.1	chr8	92356033	92356233	-	1	NA	NA	NA	-13	NR_033641	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	0.090000	0.636816	
mm_143470.1	chr17	71086469	71086669	-	1	NA	NA	NA	67012	NM_001083934	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.015000	0.402985	
mm_90296.1	chr10	125388478	125388678	+	1	NA	NA	NA	-60043	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.010000	0.557214	
mm_2066.1	chr1	87620215	87620415	+	1	NA	NA	NA	3	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.010000	0.567164	
mm_171786.1	chr5	11064077	11064277	+	1	NA	NA	NA	62278	NR_126451	75330	Mm.326776	NR_126451	ENSMUSG00000106506	4930558F17Rik	-	RIKEN cDNA 4930558F17 gene	ncRNA	0.030000	0.567164	
mm_158294.1	chrX	113099367	113099567	-	1	NA	NA	NA	-24574	NR_029849	723850		NR_029849	ENSMUSG00000065510	Mir361	Mirn361|mir-361|mmu-mir-361	microRNA 361	ncRNA	0.000000	0.268657	-15(TTTTTTAAAAGG,-,0.00)
mm_164976.1	chr19	8831126	8831326	+	1	NA	NA	NA	-6241	NM_001136064	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.030000	0.402985	
mm_83652.1	chr9	49506855	49507055	-	1	NA	NA	NA	-11333	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.025000	0.572139	
mm_111434.1	chr12	91804274	91804474	-	1	NA	NA	NA	-17938	NM_175367	108800	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.015000	0.432836	
mm_100167.1	chr11	116531734	116531934	+	1	NA	NA	NA	-77	NM_001172475	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.070000	0.592040	
mm_86188.1	chr9	119341305	119341505	-	1	NA	NA	NA	111	NM_130864	113868	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	0.060000	0.601990	71(GTCTTTAGAGGG,+,0.00)
mm_138746.1	chr17	37009793	37009993	+	1	NA	NA	NA	6227	NR_033137	22715	Mm.305561	NM_009559	ENSMUSG00000036036	Zfp57	G19|Zfp-57	zinc finger protein 57	protein-coding	0.030000	0.577114	
mm_43548.1	chr5	137569735	137569935	+	1	NA	NA	NA	-5	NM_001289509	50765	Mm.21757	NM_015799	ENSMUSG00000029716	Tfr2	Trfr2	transferrin receptor 2	protein-coding	0.030000	0.611940	-79(CTCCAGAAAAGG,-,0.00)
mm_60378.1	chr7	44468011	44468211	+	1	NA	NA	NA	131	NM_001205070	66124	Mm.358691	NM_025368	ENSMUSG00000038695	Josd2	1110007C05Rik	Josephin domain containing 2	protein-coding	0.125000	0.671642	
mm_9123.1	chr1	170312898	170313098	-	1	NA	NA	NA	4137	NM_001039593	76925	Mm.33631	NM_001039593	ENSMUSG00000042800	1700015E13Rik	-	RIKEN cDNA 1700015E13 gene	protein-coding	0.005000	0.398010	
mm_33324.1	chr4	129105477	129105677	+	1	NA	NA	NA	29	NM_001290706	66260	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.110000	0.746269	
mm_108924.1	chr12	100885777	100885977	+	1	NA	NA	NA	13647	NM_001177674	238377	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.010000	0.407960	
mm_122039.1	chr14	30008776	30008976	-	1	NA	NA	NA	20	NM_019583	50905	Mm.269363	NM_019583	ENSMUSG00000015966	Il17rb	Evi27|IL-17ER|IL-17Rh1|IL17RH1|Il17br	interleukin 17 receptor B	protein-coding	0.085000	0.711443	
mm_125287.1	chr15	36726297	36726497	+	1	NA	NA	NA	64535	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.005000	0.432836	47(CACTCTAAAAGG,-,0.00)
mm_141320.1	chr17	28365115	28365315	-	1	NA	NA	NA	-72	NM_021478	22157	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.030000	0.592040	
mm_95833.1	chr11	56072814	56073014	+	1	NA	NA	NA	-31927	NM_153079	216749	Mm.213205	NM_153079	ENSMUSG00000037393	Nmur2	Nmu2r	neuromedin U receptor 2	protein-coding	0.005000	0.482587	
mm_169757.1	chr15	93234271	93234471	+	1	NA	NA	NA	40713	NM_001033275	223827	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.035000	0.507463	
mm_15514.1	chr2	158285634	158285834	+	1	NA	NA	NA	-20759	NM_008489	16803	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	0.025000	0.462687	
mm_86836.1	chr10	21394311	21394511	+	1	NA	NA	NA	17111	NM_178713	237320	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0.005000	0.378109	
mm_167331.1	chr8	70676103	70676303	+	1	NA	NA	NA	2972	NM_015816	50783	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.005000	0.547264	
mm_105409.1	chr11	103621332	103621532	-	1	NA	NA	NA	-6693	NM_001033434	380730	Mm.380214	NM_001033434	ENSMUSG00000034239	Gm884	LRRC37	predicted gene 884	protein-coding	0.030000	0.522388	
mm_137061.1	chr17	18957982	18958182	+	1	NA	NA	NA	43760	NM_001104549	627367	Mm.384131	NM_001104549	ENSMUSG00000091491	Vmn2r97	EG627367|Vn2r97	vomeronasal 2, receptor 97	protein-coding	0.005000	0.462687	
mm_82359.1	chr9	14500211	14500411	-	1	NA	NA	NA	171	NM_173433	244694	Mm.240457	NM_173433	ENSMUSG00000053914	Kdm4d	4932416A15|Jmjd2d	lysine (K)-specific demethylase 4D	protein-coding	0.085000	0.557214	
mm_85242.1	chr9	98957195	98957395	-	1	NA	NA	NA	1688	NM_012020	26927	Mm.151239	NM_012020	ENSMUSG00000050397	Foxl2	AU045128|BPES|PINTO|Pfrk	forkhead box L2	protein-coding	0.065000	0.641791	
mm_159095.1	chr2	35151501	35151701	+	1	NA	NA	NA	19367	NM_001290635	26920	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.020000	0.422886	
mm_131996.1	chr16	25059828	25060028	+	1	NA	NA	NA	289	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.010000	0.502488	
mm_153901.1	chr19	47090533	47090733	-	1	NA	NA	NA	-8	NM_023211	66477	Mm.29722	NM_023211	ENSMUSG00000071528	Usmg5	2010301L15Rik	upregulated during skeletal muscle growth 5	protein-coding	0.130000	0.651741	
mm_155011.1	chrX	41401421	41401621	+	1	NA	NA	NA	-8	NM_001290451	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding	0.060000	0.517413	
mm_66497.1	chr7	45061630	45061830	-	1	NA	NA	NA	-78	NM_022999	65116	Mm.379098	NM_022999	ENSMUSG00000007837	Prrg2	1600014G02Rik|2510041M06Rik|N4WBP1	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	protein-coding	0.025000	0.597015	
mm_152595.1	chr19	11640636	11640836	-	1	NA	NA	NA	115	NM_133246	170813	Mm.240438	NM_133246	ENSMUSG00000024681	Ms4a3	HTm4	membrane-spanning 4-domains, subfamily A, member 3	protein-coding	0.005000	0.472637	
mm_6975.1	chr1	86351312	86351512	-	1	NA	NA	NA	-127	NR_028478	100303740	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	0.015000	0.422886	-29(GACCTTAAAAGA,-,0.00)
mm_78013.1	chr9	13473765	13473965	+	1	NA	NA	NA	42504	NR_028271	18689	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.010000	0.343284	
mm_23674.1	chr3	68584014	68584214	+	1	NA	NA	NA	11746	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.025000	0.587065	
mm_24848.1	chr3	95674394	95674594	+	1	NA	NA	NA	13423	NM_144899	229595	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.010000	0.611940	
mm_158875.1	chrY	1286529	1286729	-	1	NA	NA	NA	-16	NM_012008	26900	Mm.302938	NM_012008	ENSMUSG00000069045	Ddx3y	8030469F12Rik|D1Pas1-rs1|Dby	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	protein-coding	0.080000	0.467662	
mm_119077.1	chr14	30880348	30880548	+	1	NA	NA	NA	1191	NM_181390	66175	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0.020000	0.572139	
mm_66065.1	chr7	30821049	30821249	-	1	NA	NA	NA	-10	NM_001168511	233079	Mm.97338	NM_146187	ENSMUSG00000051314	Ffar2	GPCR43|Gpr43	free fatty acid receptor 2	protein-coding	0.005000	0.482587	
mm_103545.1	chr11	77553733	77553933	-	1	NA	NA	NA	38716	NM_026185	67477	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	0.030000	0.442786	
mm_12533.1	chr2	72227837	72228037	+	1	NA	NA	NA	-57700	NM_023057	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.005000	0.447761	
mm_117289.1	chr13	66698171	66698371	-	1	NA	NA	NA	207079	NM_026219	67530	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	0.015000	0.517413	
mm_72811.1	chr8	87473313	87473513	+	1	NA	NA	NA	297	NR_125722	100040294	Mm.213632	NR_033430	ENSMUSG00000097248	Gm2694	C230036H16Rik|linc1582	predicted gene 2694	ncRNA	0.080000	0.592040	
mm_169623.1	chr15	39835669	39835869	+	1	NA	NA	NA	21701	NM_001164466	64705	Mm.275974	NM_022722	ENSMUSG00000022304	Dpys	1200017I10Rik|1300004I01Rik|DHP|DHPase	dihydropyrimidinase	protein-coding	0.030000	0.522388	
mm_139750.1	chr17	63863031	63863231	+	1	NA	NA	NA	-850	NM_001037997	14158	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.030000	0.477612	
mm_152057.1	chr19	6299499	6299699	-	1	NA	NA	NA	-6858	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.015000	0.621891	
mm_84747.1	chr9	75409268	75409468	-	1	NA	NA	NA	-9	NM_027418	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.075000	0.691542	
mm_123161.1	chr14	57133281	57133481	-	1	NA	NA	NA	230	NM_001271663	14623	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	0.100000	0.711443	
mm_78698.1	chr9	41206062	41206262	+	1	NA	NA	NA	7	NR_040392	78500	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	0.010000	0.462687	
mm_27452.1	chr3	52041221	52041421	-	1	NA	NA	NA	63685	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.005000	0.333333	
mm_53778.1	chr6	146501550	146501750	+	1	NA	NA	NA	573	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.080000	0.651741	
mm_107270.1	chr12	29533204	29533404	+	1	NA	NA	NA	-1601	NM_001093776	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.030000	0.616915	
mm_86059.1	chr9	114639937	114640137	-	1	NA	NA	NA	163	NM_153585	78893	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	0.095000	0.666667	
mm_43419.1	chr5	136038594	136038794	+	1	NA	NA	NA	198	NM_175309	100647	Mm.3089	NM_175309	ENSMUSG00000042985	Upk3b	AI447729|AI957187|P35|PMS2L14|UpIIIb	uroplakin 3B	protein-coding	0.005000	0.621891	
mm_63775.1	chr7	131554194	131554394	+	1	NA	NA	NA	232	NM_145998	15372	Mm.303357	NM_145998	ENSMUSG00000050100	Hmx2	Nkx-5.2|Nkx5-2	H6 homeobox 2	protein-coding	0.055000	0.656716	-35(CGCTCTAAAGGG,-,0.00)
mm_62384.1	chr7	100833912	100834112	+	1	NA	NA	NA	29401	NM_177073	320100	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.005000	0.567164	
mm_93234.1	chr10	95324035	95324235	-	1	NA	NA	NA	2	NM_001330141	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.025000	0.482587	
mm_84840.1	chr9	78378054	78378254	-	1	NA	NA	NA	434	NM_026480	67968	Mm.26883	NM_026480	ENSMUSG00000032346	Ooep	2410146L05Rik|Floped|Moep19|Sddr	oocyte expressed protein	protein-coding	0.025000	0.512438	
mm_143305.1	chr17	65986466	65986666	-	1	NA	NA	NA	-35379	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.000000	0.298507	
mm_87525.1	chr10	53337611	53337811	+	1	NA	NA	NA	25	NM_001141927	18821	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0.020000	0.467662	
mm_78106.1	chr9	20544530	20544730	+	1	NA	NA	NA	-23211	NM_001082485	77519	Mm.431849	NM_001082485	ENSMUSG00000060510	Zfp266	5330440G10Rik|5730601F06Rik|AW552317	zinc finger protein 266	protein-coding	0.090000	0.701493	
mm_63036.1	chr7	121075212	121075412	+	1	NA	NA	NA	-782	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.020000	0.522388	66(GCCCAGAAAAGC,-,0.00)
mm_72415.1	chr8	81856289	81856489	+	1	NA	NA	NA	513827	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.015000	0.442786	
mm_107147.1	chr12	21587107	21587307	+	1	NA	NA	NA	-169771	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.035000	0.497512	
mm_80079.1	chr9	70012466	70012666	+	1	NA	NA	NA	18	NM_001282083	235459	Mm.293117	NM_199151	ENSMUSG00000033543	Gtf2a2	TFIIA-gamma|TfIIg|Tfiia2	general transcription factor II A, 2	protein-coding	0.105000	0.711443	
mm_89704.1	chr10	97647051	97647251	+	1	NA	NA	NA	3083	NM_007884	13516	Mm.148886	NM_007884	ENSMUSG00000019936	Epyc	Dspg3|PG-Lb|SLRR3B	epiphycan	protein-coding	0.020000	0.343284	
mm_166245.1	chr5	76183717	76183917	-	1	NA	NA	NA	-63	NM_011626	21982	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0.090000	0.686567	
mm_13263.1	chr2	98666370	98666570	+	1	NA	NA	NA	1198813	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.020000	0.333333	
mm_141354.1	chr17	28689673	28689873	-	1	NA	NA	NA	214	NM_001290320	224661		NM_146076	ENSMUSG00000036196	Slc26a8	-	solute carrier family 26, member 8	protein-coding	0.120000	0.741294	
mm_91474.1	chr10	34207482	34207682	-	1	NA	NA	NA	-31	NM_172508	212898	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.045000	0.552239	-68(CGCTTTAAAAAA,-,0.00),-67(GCTTTAAAAAAC,+,0.00)
mm_114085.1	chr13	54589839	54590039	+	1	NA	NA	NA	135	NM_178605	28126	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	0.065000	0.562189	
mm_136193.1	chr16	89487851	89488051	-	1	NA	NA	NA	1	NM_010675	16703	Mm.13979	NM_010675	ENSMUSG00000059632	Krtap8-1	AI326176	keratin associated protein 8-1	protein-coding	0.015000	0.502488	-35(GGGTATATAAAG,-,0.00)
mm_43325.1	chr5	134989939	134990139	+	1	NA	NA	NA	3825	NM_009902	12739	Mm.158662	NM_009902	ENSMUSG00000070473	Cldn3	AI182374|Cpetr2|mRVP1	claudin 3	protein-coding	0.010000	0.477612	
mm_66039.1	chr7	30660142	30660342	-	1	NA	NA	NA	4752	NM_027999	71909	Mm.290410	NM_027999	ENSMUSG00000078762	Haus5	2310022K01Rik	HAUS augmin-like complex, subunit 5	protein-coding	0.015000	0.552239	
mm_15590.1	chr2	160366169	160366369	+	1	NA	NA	NA	796	NM_010658	16658	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.090000	0.661692	
mm_129506.1	chr15	78929641	78929841	-	1	NA	NA	NA	3016	NM_008495	16852	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	0.030000	0.597015	
mm_55299.1	chr6	54811650	54811850	-	1	NA	NA	NA	-5166	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.020000	0.482587	
mm_34455.1	chr4	148044193	148044393	+	1	NA	NA	NA	3104	NM_001161798	17769	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	5,10-methylenetetrahydrofolate reductase	protein-coding	0.005000	0.552239	
mm_74041.1	chr8	121950581	121950781	+	1	NA	NA	NA	189	NM_001285983	53325	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	0.150000	0.721393	
mm_126962.1	chr15	92344274	92344474	+	1	NA	NA	NA	-52436	NM_001164593	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding	0.040000	0.482587	
mm_57755.1	chr6	129229003	129229203	-	1	NA	NA	NA	8942	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.000000	0.462687	
mm_8656.1	chr1	156473067	156473267	-	1	NA	NA	NA	1161	NM_009230	20652	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0.030000	0.532338	
mm_104366.1	chr11	94346045	94346245	-	1	NA	NA	NA	18144	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.025000	0.567164	
mm_14628.1	chr2	136781046	136781246	+	1	NA	NA	NA	67696	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.005000	0.442786	-81(TCTTTTCTAGGC,+,0.00)
mm_1679.1	chr1	74854828	74855028	+	1	NA	NA	NA	-101	NM_009872	12570	Mm.153833	NM_009872	ENSMUSG00000090071	Cdk5r2	B230310J22Rik|p39	cyclin-dependent kinase 5, regulatory subunit 2 (p39)	protein-coding	0.120000	0.741294	
mm_120572.1	chr14	69158484	69158684	+	1	NA	NA	NA	-13218	NM_010920	18092	Mm.390691	NM_010920	ENSMUSG00000044186	Nkx2-6	AV044928|Nkx-2.6|Nkx2.6|Tix|tinman	NK2 homeobox 6	protein-coding	0.045000	0.562189	
mm_62795.1	chr7	112741943	112742143	+	1	NA	NA	NA	-17341	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.030000	0.572139	
mm_94210.1	chr11	3123915	3124115	+	1	NA	NA	NA	-6	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.065000	0.636816	
mm_94258.1	chr11	3452384	3452584	+	1	NA	NA	NA	1	NR_045276	71523	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	0.095000	0.656716	
mm_5007.1	chr1	191978188	191978388	+	1	NA	NA	NA	34	NM_001303132	74023	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	0.015000	0.507463	
mm_64986.1	chr7	16916246	16916446	-	1	NA	NA	NA	7686	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.050000	0.621891	
mm_116358.1	chr13	40726813	40727013	-	1	NA	NA	NA	-895	NR_125899	102633805		NR_125899	ENSMUSG00000097752	Gm26688	Tfap2a-as1	predicted gene, 26688	ncRNA	0.005000	0.293532	
mm_155812.1	chrX	99975510	99975710	+	1	NA	NA	NA	4	NM_001177943	13607	Mm.328086	NM_010099	ENSMUSG00000059327	Eda	EDA1|Ed1|Eda-A1|Eda-A2|HED|Ta|Tnlg7c|XLHED|tabby	ectodysplasin-A	protein-coding	0.070000	0.701493	
mm_167191.1	chr7	142558483	142558683	-	1	NA	NA	NA	15	NR_002452	330677	Mm.265130	NR_002452	ENSMUSG00000087090	Nctc1	9530074L01|Rhit1	non-coding transcript 1	ncRNA	0.005000	0.557214	
mm_169915.1	chr16	57174472	57174672	-	1	NA	NA	NA	-7240	NM_023175	52633	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.000000	0.457711	
mm_63056.1	chr7	121914200	121914400	+	1	NA	NA	NA	49262	NR_073548	20277	Mm.7709	NM_011325	ENSMUSG00000030873	Scnn1b	-	sodium channel, nonvoltage-gated 1 beta	protein-coding	0.020000	0.547264	
mm_173346.1	chrY	90812952	90813152	+	1	NA	NA	NA	26354	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.000000	0.527363	
mm_33807.1	chr4	135120829	135121029	+	1	NA	NA	NA	284	NM_019732	12399	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.025000	0.323383	
mm_78308.1	chr9	22655053	22655253	+	1	NA	NA	NA	179438	NM_178415	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.025000	0.492537	
mm_117154.1	chr13	61541735	61541935	-	1	NA	NA	NA	4	NM_022326	64139	Mm.279933	NM_022326	ENSMUSG00000074871	Ctsm	1600027J17Rik|AI324100|Catm	cathepsin M	protein-coding	0.010000	0.482587	-36(ACCTTTATAAAG,-,0.00),-34(CTTTATAAAGAG,+,0.00)
mm_79850.1	chr9	64847927	64848127	+	1	NA	NA	NA	37016	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.005000	0.323383	
mm_69960.1	chr7	142376288	142376488	-	1	NA	NA	NA	-2642	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.010000	0.557214	
mm_124858.1	chr15	9554472	9554672	+	1	NA	NA	NA	-24696	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.015000	0.442786	
mm_28285.1	chr3	88951080	88951280	-	1	NA	NA	NA	-898	NM_001164533	65111	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0.055000	0.631841	
mm_21033.1	chr2	152490037	152490237	-	1	NA	NA	NA	1	NM_001002791	442835	Mm.99065	NM_001002791	ENSMUSG00000027468	Defb22	9230002F21Rik	defensin beta 22	protein-coding	0.000000	0.467662	
mm_124373.1	chr14	105922505	105922705	-	1	NA	NA	NA	-25786	NM_011897	24064	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty homolog 2 (Drosophila)	protein-coding	0.010000	0.457711	
mm_75966.1	chr8	71725616	71725816	-	1	NA	NA	NA	-35	NM_028715	74015	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.110000	0.676617	
mm_8322.1	chr1	149449849	149450049	-	1	NA	NA	NA	472490	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.000000	0.412935	
mm_112953.1	chr13	21179337	21179537	+	1	NA	NA	NA	-494	NM_009054	19720	Mm.314056	NM_009054	ENSMUSG00000021326	Trim27	AW538890|Gm19403|Rfp	tripartite motif-containing 27	protein-coding	0.045000	0.636816	
mm_43768.1	chr5	140767863	140768063	+	1	NA	NA	NA	43836	NM_173405	231842	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.020000	0.601990	
mm_128008.1	chr15	13148051	13148251	-	1	NA	NA	NA	25524	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.005000	0.378109	
mm_158529.1	chrX	143861149	143861349	-	1	NA	NA	NA	-33837	NM_007603	12338	Mm.30290	NM_007603	ENSMUSG00000067276	Capn6	-	calpain 6	protein-coding	0.000000	0.323383	
mm_91181.1	chr10	20906965	20907165	-	1	NA	NA	NA	-45482	NM_026203	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.005000	0.422886	-44(CCTTTTATAATC,+,0.00)
mm_5582.1	chr1	39552106	39552306	-	1	NA	NA	NA	-3366	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.005000	0.373134	52(CTTTTTAGACAG,+,0.00)
mm_143276.1	chr17	65674970	65675170	-	1	NA	NA	NA	-32866	NM_001146002	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.005000	0.527363	
mm_66314.1	chr7	39910870	39911070	-	1	NA	NA	NA	393204	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.005000	0.368159	
mm_43986.1	chr5	146385188	146385388	+	1	NA	NA	NA	282	NM_145155	245880	Mm.472750	NM_145155	ENSMUSG00000029636	Wasf3	Scar3|Wave3	WAS protein family, member 3	protein-coding	0.145000	0.771144	
mm_111327.1	chr12	86478852	86479052	-	1	NA	NA	NA	57308	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.005000	0.447761	
mm_69719.1	chr7	140218125	140218325	-	1	NA	NA	NA	-42	NM_172909	244233	Mm.19283	NM_172909	ENSMUSG00000025461	Cd163l1	B430307C05|E430002D04Rik|Scart1	CD163 molecule-like 1	protein-coding	0.005000	0.522388	
mm_159167.1	chr2	92320232	92320432	+	1	NA	NA	NA	50725	NM_001290774	228366	Mm.31158	NM_172670	ENSMUSG00000040434	Large2	5730485C17Rik|AI891893|Gyltl1b|Largel|mKIAA4105	LARGE xylosyl- and glucuronyltransferase 2	protein-coding	0.025000	0.552239	
mm_14518.1	chr2	132597355	132597555	+	1	NA	NA	NA	-741	NR_033468	767814	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.030000	0.497512	
mm_78206.1	chr9	21469829	21470029	+	1	NA	NA	NA	26635	NR_029585	387194		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.010000	0.308458	
mm_26112.1	chr3	137623947	137624147	+	1	NA	NA	NA	375	NM_030143	73284	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	0.040000	0.572139	
mm_72197.1	chr8	72548365	72548565	+	1	NA	NA	NA	-155	NM_027485	70625	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	0.095000	0.646766	
mm_113289.1	chr13	30245523	30245723	+	1	NA	NA	NA	-90733	NM_177322	11607	Mm.35062	NM_177322	ENSMUSG00000049115	Agtr1a	1810074K20Rik|AG2S|AI551199|AT1|AT1a|AT2R1|AT2R1A|Agtr-1a|Agtr1|Angtr-1a	angiotensin II receptor, type 1a	protein-coding	0.015000	0.402985	
mm_108838.1	chr12	96922954	96923154	+	1	NA	NA	NA	-875832	NR_103800	69423	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0.025000	0.462687	
mm_109512.1	chr12	111454125	111454325	+	1	NA	NA	NA	11564	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.020000	0.542289	
mm_46725.1	chr5	110770082	110770282	-	1	NA	NA	NA	535	NM_029337	75560	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	0.155000	0.721393	
mm_91503.1	chr10	37136106	37136306	-	1	NA	NA	NA	2720	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.175000	0.810945	
mm_107298.1	chr12	30910450	30910650	+	1	NA	NA	NA	1062	NM_021330	11431	Mm.359831	NM_021330	ENSMUSG00000044573	Acp1	4632432E04Rik|AI427468|Acp-1|LMW-PTP|Lmptp	acid phosphatase 1, soluble	protein-coding	0.015000	0.532338	
mm_101440.1	chr11	30159452	30159652	-	1	NA	NA	NA	38705	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.005000	0.527363	
mm_57720.1	chr6	128826204	128826404	-	1	NA	NA	NA	11	NM_030599	80782	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0.020000	0.507463	
mm_52614.1	chr6	117173799	117173999	+	1	NA	NA	NA	5364	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.005000	0.447761	-88(GCTTTTATAACT,+,0.00)
mm_19363.1	chr2	91098794	91098994	-	1	NA	NA	NA	2216	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.020000	0.557214	
mm_1836.1	chr1	82821614	82821814	+	1	NA	NA	NA	-17746	NM_001310713	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.010000	0.383085	-6(TTTTTTAAAGCA,+,0.00)
mm_75012.1	chr8	28651072	28651272	-	1	NA	NA	NA	-566319	NR_033590	666422	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	0.005000	0.393035	79(GTTTTTATAGGT,+,0.00)
mm_115594.1	chr13	11827211	11827411	-	1	NA	NA	NA	279634	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.000000	0.427861	
mm_79248.1	chr9	50593145	50593345	+	1	NA	NA	NA	10604	NM_025848	66925	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0.030000	0.502488	
mm_30727.1	chr4	13751447	13751647	+	1	NA	NA	NA	250	NM_001111027	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.105000	0.666667	
mm_43488.1	chr5	136919260	136919460	+	1	NA	NA	NA	214	NR_015555	66752	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	0.090000	0.597015	
mm_97339.1	chr11	77348182	77348382	+	1	NA	NA	NA	2	NM_001291190	237860	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot homolog 2 (Drosophila)	protein-coding	0.130000	0.771144	
mm_108593.1	chr12	85374031	85374231	+	1	NA	NA	NA	586	NM_026775	68581	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.040000	0.527363	
mm_54057.1	chr6	13839802	13840002	-	1	NA	NA	NA	40	NM_001330666	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.020000	0.368159	
mm_165199.1	chr2	32608575	32608775	+	1	NA	NA	NA	1690	NR_110347	50935	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.050000	0.631841	
mm_116863.1	chr13	54930106	54930306	-	1	NA	NA	NA	-19205	NM_001311128	107448	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	0.010000	0.562189	
mm_12465.1	chr2	71389130	71389330	+	1	NA	NA	NA	-30	NM_026115	107435	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0.115000	0.646766	
mm_51025.1	chr6	65145083	65145283	+	1	NA	NA	NA	-453	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.030000	0.507463	
mm_36711.1	chr4	97751739	97751939	-	1	NA	NA	NA	-25787	NM_001122953	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.065000	0.636816	
mm_33134.1	chr4	125029938	125030138	+	1	NA	NA	NA	24	NM_145552	230737	Mm.90760	NM_145552	ENSMUSG00000028869	Gnl2	BC003262|HUMAUANTIG|Ngp-1	guanine nucleotide binding protein-like 2 (nucleolar)	protein-coding	0.120000	0.626866	
mm_122527.1	chr14	47380202	47380402	-	1	NA	NA	NA	6442	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.005000	0.661692	
mm_134468.1	chr16	18426511	18426711	-	1	NA	NA	NA	105	NM_007744	12846	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.095000	0.701493	
mm_133264.1	chr16	77351601	77351801	+	1	NA	NA	NA	22373	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.015000	0.432836	
mm_172670.1	chr8	44233741	44233941	+	1	NA	NA	NA	-534350	NM_001079931	384814	Mm.491652	NM_001079931		Gm5347	EG384814	predicted gene 5347	protein-coding	0.040000	0.582090	
mm_7981.1	chr1	134099099	134099299	-	1	NA	NA	NA	-12043	NM_001284524	71884	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.025000	0.532338	
mm_19022.1	chr2	76948957	76949157	-	1	NA	NA	NA	33490	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.005000	0.407960	
mm_14018.1	chr2	122150820	122151020	+	1	NA	NA	NA	3233	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.035000	0.482587	
mm_68798.1	chr7	125349664	125349864	-	1	NA	NA	NA	22	NR_045804	71208	Mm.159465	NM_172408	ENSMUSG00000045928	4933440M02Rik	-	RIKEN cDNA 4933440M02 gene	ncRNA	0.010000	0.522388	
mm_9720.1	chr1	179803737	179803937	-	1	NA	NA	NA	178	NM_026375	226747	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.085000	0.572139	
mm_159011.1	chr1	164307948	164308148	+	1	NA	NA	NA	376	NM_178071	171567	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	0.035000	0.412935	-30(CCGTTTATAAGC,-,0.00)
mm_141779.1	chr17	34293618	34293818	-	1	NA	NA	NA	-5947	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.005000	0.537313	
mm_136453.1	chr16	94997484	94997684	-	1	NA	NA	NA	112	NM_001025584	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.055000	0.616915	
mm_41556.1	chr5	93003703	93003903	+	1	NA	NA	NA	41219	NM_175270	78088	Mm.245085	NM_175270	ENSMUSG00000045314	Sowahb	5730467H21Rik|Ankrd56	sosondowah ankyrin repeat domain family member B	protein-coding	0.015000	0.393035	
mm_30108.1	chr3	138982682	138982882	-	1	NA	NA	NA	92419	NM_145544	229877	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.000000	0.318408	
mm_105999.1	chr11	115699163	115699363	-	1	NA	NA	NA	271	NM_001313937	14784	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.020000	0.557214	
mm_49433.1	chr6	29279493	29279693	+	1	NA	NA	NA	-1548	NM_001101486	245884	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	0.025000	0.492537	
mm_165754.1	chr3	110143308	110143508	+	1	NA	NA	NA	64	NM_001163348	80883	Mm.39262	NM_030699	ENSMUSG00000059857	Ntng1	A930010C08Rik|AI853992|Lmnt1	netrin G1	protein-coding	0.055000	0.477612	
mm_44397.1	chr5	17835655	17835855	-	1	NA	NA	NA	141	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.383085	-6(TTTTTTAAAGCT,+,0.00)
mm_171936.1	chr5	65300399	65300599	+	1	NA	NA	NA	35140	NM_011258	19687	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0.020000	0.512438	
mm_167283.1	chr8	39622164	39622364	-	1	NA	NA	NA	20414	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.338308	
mm_15497.1	chr2	157817871	157818071	+	1	NA	NA	NA	80570	NM_025680	66642	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	0.025000	0.447761	
mm_48228.1	chr5	137669473	137669673	-	1	NA	NA	NA	15180	NM_001303271	231801	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	0.020000	0.472637	
mm_161322.1	chr14	47308466	47308666	+	1	NA	NA	NA	10252	NM_178684	218975	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	0.005000	0.263682	
mm_165646.1	chr3	82358118	82358318	+	1	NA	NA	NA	146	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0.075000	0.671642	
mm_16087.1	chr2	168766447	168766647	+	1	NA	NA	NA	654	NM_201395	99377	Mm.434054	NM_175303	ENSMUSG00000027547	Sall4	5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20	sal-like 4 (Drosophila)	protein-coding	0.030000	0.577114	-33(TTCTTTTAAAAG,-,0.00),-32(TCTTTTAAAAGC,+,0.00),-32(TCTTTTAAAAGC,-,0.00),-31(CTTTTAAAAGCG,+,0.00)
mm_147444.1	chr18	46525870	46526070	-	1	NA	NA	NA	1	NM_173423	240263	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.135000	0.761194	
mm_155212.1	chrX	56786947	56787147	+	1	NA	NA	NA	520	NM_001287800	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.005000	0.373134	
mm_157011.1	chrX	7652707	7652907	-	1	NA	NA	NA	-4572	NM_001290624	54630	Mm.232232	NM_175097	ENSMUSG00000031145	Prickle3	Lmo6|Sfc16	prickle planar cell polarity protein 3	protein-coding	0.020000	0.497512	
mm_42354.1	chr5	114911552	114911752	+	1	NA	NA	NA	-11588	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.010000	0.412935	
mm_145486.1	chr18	60383563	60383763	+	1	NA	NA	NA	7634	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.000000	0.427861	
mm_143538.1	chr17	73950510	73950710	-	1	NA	NA	NA	-414	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.020000	0.537313	
mm_163810.1	chr14	19416089	19416289	-	1	NA	NA	NA	186398	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.323383	
mm_4566.1	chr1	177448105	177448305	+	1	NA	NA	NA	2384	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.035000	0.597015	
mm_72419.1	chr8	82041683	82041883	+	1	NA	NA	NA	360803	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.005000	0.437811	
mm_96950.1	chr11	70562841	70563041	+	1	NA	NA	NA	60	NM_016713	50932	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	0.145000	0.776119	
mm_171233.1	chr3	67607752	67607952	-	1	NA	NA	NA	25084	NM_025813	66868	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.070000	0.542289	
mm_35987.1	chr4	55528036	55528236	-	1	NA	NA	NA	4339	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.025000	0.522388	
mm_148473.1	chr19	4097596	4097796	+	1	NA	NA	NA	345	NM_026373	52004	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0.035000	0.567164	
mm_149235.1	chr19	10182922	10183122	+	1	NA	NA	NA	134	NM_146094	76267	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0.145000	0.736318	
mm_69579.1	chr7	135701909	135702109	-	1	NA	NA	NA	14370	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.427861	
mm_13384.1	chr2	103957860	103958060	+	1	NA	NA	NA	-35	NM_001142337	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.010000	0.467662	
mm_21295.1	chr2	157006961	157007161	-	1	NA	NA	NA	14	NM_025853	66934	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0.140000	0.671642	
mm_158100.1	chrX	101734106	101734306	-	1	NA	NA	NA	-59	NM_009910	12766	Mm.12876	NM_009910	ENSMUSG00000050232	Cxcr3	Cd183|Cmkar3	chemokine (C-X-C motif) receptor 3	protein-coding	0.015000	0.517413	
mm_570.1	chr1	38049154	38049354	+	1	NA	NA	NA	51244	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.010000	0.328358	
mm_64866.1	chr7	13333176	13333376	-	1	NA	NA	NA	3954	NM_001004762	232889	Mm.223639	NM_001004762	ENSMUSG00000033847	Pla2g4c	D7Ertd445e	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding	0.050000	0.487562	
mm_98711.1	chr11	96307043	96307243	+	1	NA	NA	NA	-233	NR_131758	75395	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	0.030000	0.522388	
mm_130601.1	chr15	99780476	99780676	-	1	NA	NA	NA	-8061	NM_028015	71949	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	0.045000	0.502488	
mm_80008.1	chr9	67840268	67840468	+	1	NA	NA	NA	-28	NM_177184	320528	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.135000	0.771144	
mm_51975.1	chr6	91758740	91758940	+	1	NA	NA	NA	48553	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.025000	0.437811	
mm_70453.1	chr8	11797281	11797481	+	1	NA	NA	NA	39051	NM_001113518	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.030000	0.542289	
mm_124937.1	chr15	12234228	12234428	+	1	NA	NA	NA	29234	NM_172958	268783	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.005000	0.417910	19(GTTTTAATGGAG,+,0.00)
mm_35517.1	chr4	41191135	41191335	-	1	NA	NA	NA	55214	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.000000	0.288557	
mm_34004.1	chr4	137920804	137921004	+	1	NA	NA	NA	58667	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.025000	0.606965	
mm_160505.1	chr9	19712653	19712853	+	1	NA	NA	NA	-76	NM_001012265	257963	Mm.377317	NM_001012265	ENSMUSG00000094678	Olfr857	GA_x5J8B7TQMB7-1-306|MOR146-8P	olfactory receptor 857	protein-coding	0.000000	0.303483	
mm_36256.1	chr4	63410593	63410793	-	1	NA	NA	NA	-7248	NM_001045514	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.065000	0.636816	
mm_5454.1	chr1	36273335	36273535	-	1	NA	NA	NA	-10	NM_153408	214854	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.025000	0.532338	-32(GCCTATAAAAGG,-,0.00)
mm_44015.1	chr5	147270057	147270257	+	1	NA	NA	NA	26	NM_008814	18609	Mm.389714	NM_008814	ENSMUSG00000029644	Pdx1	IDX-1|IPF-1|Ipf1|Mody4|STF-1|pdx-1	pancreatic and duodenal homeobox 1	protein-coding	0.055000	0.666667	
mm_84561.1	chr9	67733701	67733901	-	1	NA	NA	NA	-4224	NR_106101	102465716		NR_106101	ENSMUSG00000098446	Mir7242	Gm27809|mmu-mir-7242	microRNA 7242	ncRNA	0.030000	0.567164	
mm_74422.1	chr8	3645873	3646073	-	1	NA	NA	NA	-9797	NM_001204959	57264	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0.015000	0.567164	86(TCTTATATGGAA,+,0.00)
mm_41921.1	chr5	105609308	105609508	+	1	NA	NA	NA	89937	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.020000	0.427861	
mm_166773.1	chr6	136645881	136646081	+	1	NA	NA	NA	15912	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.020000	0.537313	
mm_100175.1	chr11	116533194	116533394	+	1	NA	NA	NA	56	NM_025367	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.080000	0.656716	
mm_122152.1	chr14	31269429	31269629	-	1	NA	NA	NA	18040	NM_027088	104416	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	0.035000	0.587065	
mm_9455.1	chr1	172632837	172633037	-	1	NA	NA	NA	37	NM_026725	68440	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	0.060000	0.671642	
mm_115035.1	chr13	99344691	99344891	+	1	NA	NA	NA	5	NM_173757	218506	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	0.080000	0.696517	
mm_7155.1	chr1	91456440	91456640	-	1	NA	NA	NA	2788	NM_011066	18627	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.025000	0.487562	
mm_163711.1	chr13	109342552	109342752	+	1	NA	NA	NA	17908	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.015000	0.388060	
mm_82090.1	chr9	123051094	123051294	+	1	NA	NA	NA	16453	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.040000	0.601990	
mm_14806.1	chr2	145903125	145903325	+	1	NA	NA	NA	-16	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.115000	0.651741	
mm_467.1	chr1	36372090	36372290	+	1	NA	NA	NA	-101	NM_001277076	100534273	Mm.389112	NM_001277076	ENSMUSG00000037432	Fer1l5	4930533C12Rik	fer-1-like 5 (C. elegans)	protein-coding	0.020000	0.537313	
mm_162641.1	chr1	191536477	191536677	-	1	NA	NA	NA	38967	NM_001305233	76843	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	0.000000	0.363184	
mm_57495.1	chr6	125313701	125313901	-	1	NA	NA	NA	69	NM_010736	17000	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|CD18|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	0.095000	0.761194	
mm_21051.1	chr2	152622031	152622231	-	1	NA	NA	NA	922	NM_001039122	654459	Mm.358531	NM_001039122	ENSMUSG00000074678	Defb25	BD-25|OTTMUSG00000015862|mBD-25	defensin beta 25	protein-coding	0.035000	0.462687	
mm_63630.1	chr7	128376208	128376408	+	1	NA	NA	NA	41864	NM_026418	67865	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.025000	0.587065	
mm_98589.1	chr11	95769655	95769855	+	1	NA	NA	NA	20688	NM_201609	268469	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	0.005000	0.368159	
mm_156182.1	chrX	130524481	130524681	+	1	NA	NA	NA	774839	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.010000	0.487562	
mm_137373.1	chr17	25574323	25574523	+	1	NA	NA	NA	3612	NR_045176	72834	Mm.33042	NR_045176	ENSMUSG00000091475	2810468N07Rik	-	RIKEN cDNA 2810468N07 gene	ncRNA	0.015000	0.537313	
mm_65800.1	chr7	28949557	28949757	-	1	NA	NA	NA	12623	NM_021895	60595	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.005000	0.492537	
mm_147862.1	chr18	64334746	64334946	-	1	NA	NA	NA	-5518	NM_194268	225631	Mm.234723	NM_194268	ENSMUSG00000045991	Onecut2	C730009D12|OC-2|Oc2	one cut domain, family member 2	protein-coding	0.020000	0.358209	
mm_68807.1	chr7	125491491	125491691	-	1	NA	NA	NA	-49	NM_026330	67711	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.125000	0.661692	
mm_2833.1	chr1	131525173	131525373	+	1	NA	NA	NA	2088	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.050000	0.626866	
mm_163171.1	chr11	87687632	87687832	+	1	NA	NA	NA	-11792	NR_045139	68690	Mm.342009	NR_045139		1110028F11Rik	-	RIKEN cDNA 1110028F11 gene	ncRNA	0.020000	0.477612	
mm_1027.1	chr1	58754821	58755021	+	1	NA	NA	NA	24369	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.015000	0.492537	-28(GTATTTATAGTG,+,0.00)
mm_145441.1	chr18	59075494	59075694	+	1	NA	NA	NA	13213	NR_033765	225583	Mm.209711	NM_173759	ENSMUSG00000050875	A730017C20Rik	-	RIKEN cDNA A730017C20 gene	protein-coding	0.040000	0.452736	
mm_81234.1	chr9	107906792	107906992	+	1	NA	NA	NA	3	NR_109782	19882	Mm.3901	NM_009074	ENSMUSG00000032584	Mst1r	CD136|CDw136|Fv-2|Fv2|PTK8|Ron|STK	macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	protein-coding	0.050000	0.656716	
mm_2575.1	chr1	118481605	118481805	+	1	NA	NA	NA	-22440	NR_027901	68204	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.020000	0.507463	-26(GCCTAGAAAAGA,-,0.00)
mm_37653.1	chr4	128806230	128806430	-	1	NA	NA	NA	-218	NM_001081098	230761	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.190000	0.885572	
mm_101405.1	chr11	26594546	26594746	-	1	NA	NA	NA	-726	NM_001252447	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.000000	0.378109	
mm_165148.1	chr2	19388797	19388997	-	1	NA	NA	NA	17261	NM_029619	76467	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	0.035000	0.552239	
mm_75939.1	chr8	71566508	71566708	-	1	NA	NA	NA	41	NM_145598	234404	Mm.213208	NM_145598	ENSMUSG00000034829	Nxnl1	A930031O08Rik|RdCVF|Txnl6	nucleoredoxin-like 1	protein-coding	0.015000	0.542289	
mm_7674.1	chr1	128588881	128589081	-	1	NA	NA	NA	3318	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.030000	0.557214	
mm_16897.1	chr2	13271328	13271528	-	1	NA	NA	NA	-13	NM_009105	20163	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.060000	0.582090	
mm_113708.1	chr13	43398560	43398760	+	1	NA	NA	NA	284	NM_023554	70078	Mm.439927	NM_023554	ENSMUSG00000063200	Nol7	2210008F15Rik|5730556I21Rik|NOP27|RARG-1	nucleolar protein 7	protein-coding	0.120000	0.686567	
mm_54676.1	chr6	39377596	39377796	-	1	NA	NA	NA	11	NM_028123	72144	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0.110000	0.691542	
mm_47295.1	chr5	122246383	122246583	-	1	NA	NA	NA	17977	NR_104441	654470	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.030000	0.552239	
mm_72588.1	chr8	84338548	84338748	+	1	NA	NA	NA	-68246	NM_026350	67736	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	0.040000	0.552239	
mm_137009.1	chr17	17830527	17830727	+	1	NA	NA	NA	-185	NR_029539	387235		NR_029539	ENSMUSG00000065479	Mir125a	Mirn125a	microRNA 125a	ncRNA	0.005000	0.417910	
mm_147018.1	chr18	34595795	34595995	-	1	NA	NA	NA	1573	NM_177773	271508	Mm.417609	NM_177773	ENSMUSG00000049357	4933408B17Rik	-	RIKEN cDNA 4933408B17 gene	protein-coding	0.015000	0.552239	
mm_17717.1	chr2	32386993	32387193	-	1	NA	NA	NA	646	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.025000	0.527363	
mm_87665.1	chr10	58594950	58595150	+	1	NA	NA	NA	80646	NM_010100	13608	Mm.174523	NM_010100	ENSMUSG00000003227	Edar	ED1R|ED3|ED5|EDA-A1R|EDA3|dl	ectodysplasin-A receptor	protein-coding	0.005000	0.487562	
mm_104400.1	chr11	94508248	94508448	-	1	NA	NA	NA	-8374	NM_027984	71889	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	0.015000	0.522388	
mm_133237.1	chr16	77071598	77071798	+	1	NA	NA	NA	57629	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.030000	0.452736	
mm_39617.1	chr5	24393552	24393752	+	1	NA	NA	NA	-504	NM_029020	74610	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding	0.015000	0.487562	71(GGCTATAAAGAG,-,0.00)
mm_85211.1	chr9	96800426	96800626	-	1	NA	NA	NA	34964	NR_102296	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	0.010000	0.497512	
mm_121742.1	chr14	18703831	18704031	-	1	NA	NA	NA	189696	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0.005000	0.348259	
mm_76483.1	chr8	85555246	85555446	-	1	NA	NA	NA	-75	NM_019794	56445	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0.155000	0.791045	
mm_172206.1	chr6	5673428	5673628	+	1	NA	NA	NA	-52111	NM_001191023	13426	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0.010000	0.487562	57(TCCTTTATAAAG,-,0.00),59(CTTTATAAAGTG,+,0.00)
mm_73018.1	chr8	93969036	93969236	+	1	NA	NA	NA	43504	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.005000	0.328358	
mm_171468.1	chr4	145781345	145781545	+	1	NA	NA	NA	-98	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.035000	0.487562	
mm_166268.1	chr5	89180719	89180919	+	1	NA	NA	NA	277079	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.010000	0.353234	
mm_105309.1	chr11	102819064	102819264	-	1	NA	NA	NA	-5	NM_001159382	14615	Mm.390369	NM_008122	ENSMUSG00000034520	Gjc1	C130009G16Rik|Cnx45|Cx45|Gja-7|Gja7	gap junction protein, gamma 1	protein-coding	0.165000	0.820896	
mm_110419.1	chr12	46817987	46818187	-	1	NA	NA	NA	688	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.040000	0.467662	
mm_95076.1	chr11	32642664	32642864	+	1	NA	NA	NA	209	NM_001271347	103583	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.135000	0.746269	
mm_9191.1	chr1	171150501	171150701	-	1	NA	NA	NA	2	NM_025321	66052	Mm.198138	NM_025321	ENSMUSG00000058076	Sdhc	0610010E03Rik|AI316496|AU019277	succinate dehydrogenase complex, subunit C, integral membrane protein	protein-coding	0.075000	0.616915	
mm_119693.1	chr14	53590805	53591005	+	1	NA	NA	NA	663024	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.472637	
mm_161903.1	chr18	60211960	60212160	+	1	NA	NA	NA	-17	NM_001033767	240327	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.005000	0.487562	
mm_38456.1	chr4	140581445	140581645	-	1	NA	NA	NA	67211	NM_001112723	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.055000	0.592040	
mm_66627.1	chr7	45493489	45493689	-	1	NA	NA	NA	-4793	NM_027903	71755	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	0.010000	0.582090	
mm_153193.1	chr19	34523391	34523591	-	1	NA	NA	NA	3983	NM_001111100	16889	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.035000	0.487562	
mm_101056.1	chr11	8903622	8903822	-	1	NA	NA	NA	107469	NM_001303610	15574	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	0.010000	0.527363	-37(CACTATAAAAGG,-,0.00)
mm_794.1	chr1	45345792	45345992	+	1	NA	NA	NA	34354	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.010000	0.532338	
mm_15410.1	chr2	156775321	156775521	+	1	NA	NA	NA	-43	NM_172118	98932	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0.080000	0.691542	
mm_171361.1	chr4	117189841	117190041	+	1	NA	NA	NA	-7317	NM_134471	73804	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.035000	0.393035	
mm_173228.1	chrX	77509385	77509585	+	1	NA	NA	NA	-1742	NM_020601	21372	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	0.015000	0.552239	
mm_101130.1	chr11	12412045	12412245	-	1	NA	NA	NA	-5	NM_001282994	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.000000	0.462687	-34(AGCTATATAAGA,-,0.00)
mm_108448.1	chr12	82451115	82451315	+	1	NA	NA	NA	139866	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.005000	0.517413	
mm_28635.1	chr3	95217653	95217853	-	1	NA	NA	NA	189	NM_172512	213054	Mm.224820	NM_029885	ENSMUSG00000038766	Gabpb2	1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1	GA repeat binding protein, beta 2	protein-coding	0.045000	0.542289	
mm_148602.1	chr19	5298230	5298430	+	1	NA	NA	NA	-1	NM_001024717	545276	Mm.447174	NM_001024717	ENSMUSG00000047658	Gal3st3	-	galactose-3-O-sulfotransferase 3	protein-coding	0.075000	0.676617	
mm_102049.1	chr11	52000662	52000862	-	1	NA	NA	NA	-296	NM_009458	22210	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	2610301N02Rik|E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0.085000	0.646766	
mm_119850.1	chr14	54440800	54441000	+	1	NA	NA	NA	9302	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.015000	0.557214	74(GACCTTATAGGC,-,0.00)
mm_1116.1	chr1	59875103	59875303	+	1	NA	NA	NA	-37803	NM_001037725	72750	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0.000000	0.313433	
mm_90357.1	chr10	127165301	127165501	+	1	NA	NA	NA	245	NM_001244617	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.125000	0.736318	
mm_131508.1	chr16	17489561	17489761	+	1	NA	NA	NA	-16	NM_175178	72168	Mm.40038	NM_175178	ENSMUSG00000022763	Aifm3	2810401C16Rik|AI840249|Aifl	apoptosis-inducing factor, mitochondrion-associated 3	protein-coding	0.135000	0.781095	
mm_121198.1	chr14	103051722	103051922	+	1	NA	NA	NA	4810	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.477612	-27(GCTTTAAAGACC,+,0.00)
mm_132755.1	chr16	44173183	44173383	+	1	NA	NA	NA	-114	NM_001029889	207806	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.140000	0.825871	
mm_96857.1	chr11	70056775	70056975	+	1	NA	NA	NA	2520	NM_001291132	11889	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.025000	0.582090	
mm_45020.1	chr5	38561488	38561688	-	1	NA	NA	NA	7	NM_011715	22388	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0.170000	0.756219	
mm_107990.1	chr12	73226816	73227016	+	1	NA	NA	NA	59795	NM_029580	76357	Mm.311344	NM_029580	ENSMUSG00000034442	Trmt5	2610027O18Rik|mKIAA1393	TRM5 tRNA methyltransferase 5	protein-coding	0.000000	0.253731	
mm_161780.1	chr17	38554180	38554380	+	1	NA	NA	NA	88	NM_001177585	100126773	Mm.471587	NM_001177585	ENSMUSG00000092244	Esp34	Gm20410	exocrine gland secreted peptide 34	protein-coding	0.000000	0.407960	
mm_127475.1	chr15	101273214	101273414	+	1	NA	NA	NA	6468	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.025000	0.532338	
mm_84349.1	chr9	64306709	64306909	-	1	NA	NA	NA	25224	NM_001324557	66131	Mm.196219	NM_025372	ENSMUSG00000032397	Tipin	1110005A05Rik|1110018P21Rik	timeless interacting protein	protein-coding	0.010000	0.437811	-7(TTTTTTAAACAC,+,0.00)
mm_41709.1	chr5	101765158	101765358	+	1	NA	NA	NA	128	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.165000	0.786070	
mm_142112.1	chr17	35836609	35836809	-	1	NA	NA	NA	1592	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.040000	0.547264	
mm_28231.1	chr3	88455083	88455283	-	1	NA	NA	NA	578	NM_013658	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.010000	0.552239	
mm_12825.1	chr2	80317936	80318136	+	1	NA	NA	NA	2570	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.015000	0.462687	
mm_71919.1	chr8	70148580	70148780	+	1	NA	NA	NA	-4081	NM_001045484	17259	Mm.432505	NM_008578	ENSMUSG00000079033	Mef2b	AI451606	myocyte enhancer factor 2B	protein-coding	0.010000	0.417910	
mm_64618.1	chr7	3616044	3616244	-	1	NA	NA	NA	13	NM_175632	232790	Mm.358882	NM_175632	ENSMUSG00000054594	Oscar	mOSCAR|mOSCAR-M1|mOSCAR-M2|mOSCAR-M3	osteoclast associated receptor	protein-coding	0.015000	0.502488	
mm_160227.1	chr7	102075610	102075810	+	1	NA	NA	NA	4491	NM_011644	102443351	Mm.292904	NM_011644	ENSMUSG00000070425	Xntrpc	Xndr-trpc2	Xndc1-transient receptor potential cation channel, subfamily C, member 2 readthrough	protein-coding	0.020000	0.547264	
mm_153615.1	chr19	43986079	43986279	-	1	NA	NA	NA	341	NM_030703	93721	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	0.075000	0.606965	
mm_94982.1	chr11	31822638	31822838	+	1	NA	NA	NA	1809	NR_102310	414116	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.015000	0.497512	64(GGCTATAAATGA,-,0.00)
mm_99725.1	chr11	106300398	106300598	+	1	NA	NA	NA	1398	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.055000	0.572139	
mm_93177.1	chr10	93539893	93540093	-	1	NA	NA	NA	40	NM_027908	71761	Mm.244518	NM_027908	ENSMUSG00000015890	Amdhd1	1300019J08Rik	amidohydrolase domain containing 1	protein-coding	0.090000	0.726368	
mm_60422.1	chr7	44476335	44476535	+	1	NA	NA	NA	6088	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.427861	
mm_104677.1	chr11	97690037	97690237	-	1	NA	NA	NA	4185	NM_001085500	217149	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	0.035000	0.661692	
mm_13527.1	chr2	110021880	110022080	+	1	NA	NA	NA	4163	NM_026613	68201	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	0.025000	0.512438	
mm_120928.1	chr14	76479202	76479402	+	1	NA	NA	NA	-9134	NM_001177751	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.030000	0.547264	
mm_78281.1	chr9	22101115	22101315	+	1	NA	NA	NA	1962	NM_009922	12797	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	0.035000	0.592040	
mm_136581.1	chr17	3558005	3558205	+	1	NA	NA	NA	281	NR_045302	68230	Mm.431352	NR_045302		1700102H20Rik	-	RIKEN cDNA 1700102H20 gene	ncRNA	0.025000	0.427861	32(GCTTATTTAAGG,-,0.00)
mm_11453.1	chr2	32095610	32095810	+	1	NA	NA	NA	59	NM_145521	227721	Mm.257236	NM_145521	ENSMUSG00000051373	Plpp7	D830019K17Rik|NET39|Ppapdc3	phospholipid phosphatase 7 (inactive)	protein-coding	0.015000	0.547264	
mm_54806.1	chr6	41704246	41704446	-	1	NA	NA	NA	-21	NM_032540	23925	Mm.19958	NM_032540	ENSMUSG00000029866	Kel	CD238|Ece3	Kell blood group	protein-coding	0.005000	0.547264	
mm_107759.1	chr12	59071496	59071696	+	1	NA	NA	NA	4677	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.015000	0.472637	
mm_14893.1	chr2	149404919	149405119	+	1	NA	NA	NA	-230	NM_021405	58214	Mm.117117	NM_021405	ENSMUSG00000033156	Cst10	DD72	cystatin 10 (chondrocytes)	protein-coding	0.005000	0.432836	
mm_119837.1	chr14	54427052	54427252	+	1	NA	NA	NA	243	NM_026851	68836	Mm.248163	NM_026851	ENSMUSG00000010406	Mrpl52	1110047B07Rik	mitochondrial ribosomal protein L52	protein-coding	0.090000	0.711443	
mm_171378.1	chr4	119285022	119285222	-	1	NA	NA	NA	9391	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.005000	0.412935	20(GCTTATATAGTT,+,0.00)
mm_88603.1	chr10	79805922	79806122	+	1	NA	NA	NA	12450	NM_001161747	18483	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0.040000	0.626866	
mm_1482.1	chr1	71578597	71578797	+	1	NA	NA	NA	21541	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.030000	0.467662	
mm_103783.1	chr11	82764679	82764879	-	1	NA	NA	NA	434	NM_025884	66983	Mm.29622	NM_025884	ENSMUSG00000046010	Zfp830	2410003C20Rik|AV301118|AW048207|Ccdc16|Omcg1|Znf830	zinc finger protein 830	protein-coding	0.055000	0.597015	
mm_97344.1	chr11	77462462	77462662	+	1	NA	NA	NA	-1351	NM_139129	216961	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.100000	0.701493	
mm_107291.1	chr12	29982048	29982248	+	1	NA	NA	NA	44112	NM_181395	69675	Mm.251774	NM_181395	ENSMUSG00000020674	Pxdn	2310075M15Rik|C85409|E330004E07|VPO1|mKIAA0230	peroxidasin	protein-coding	0.015000	0.532338	
mm_130994.1	chr15	103430266	103430466	-	1	NA	NA	NA	61	NM_028797	74174	Mm.325325	NM_028797	ENSMUSG00000022487	Gtsf1	1700006H03Rik|Cue110	gametocyte specific factor 1	protein-coding	0.055000	0.611940	
mm_46132.1	chr5	92675117	92675317	-	1	NA	NA	NA	-90	NM_177230	320696	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	0.110000	0.706468	
mm_2666.1	chr1	126992689	126992889	+	1	NA	NA	NA	-162157	NM_176957	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.010000	0.492537	-98(CCCTTTATGTGC,+,0.00)
mm_672.1	chr1	40465616	40465816	+	1	NA	NA	NA	95	NM_001161843	16182	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0.040000	0.621891	
mm_36032.1	chr4	57143501	57143701	-	1	NA	NA	NA	-445	NM_019427	54357	Mm.28217	NM_019427	ENSMUSG00000028434	Epb41l4b	6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2	erythrocyte membrane protein band 4.1 like 4b	protein-coding	0.165000	0.830846	
mm_33252.1	chr4	127168256	127168456	+	1	NA	NA	NA	-848	NM_198618	242667	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	discs, large (Drosophila) homolog-associated protein 3	protein-coding	0.050000	0.671642	
mm_139782.1	chr17	65783337	65783537	+	1	NA	NA	NA	82	NR_104465	70351	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0.190000	0.825871	
mm_116726.1	chr13	51703312	51703512	-	1	NA	NA	NA	51704	NM_029279	75420	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.055000	0.552239	
mm_42563.1	chr5	117142023	117142223	+	1	NA	NA	NA	8535	NM_183306	330177	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.010000	0.427861	30(CTCTTTAGGGCC,+,0.00)
mm_7800.1	chr1	131525430	131525630	-	1	NA	NA	NA	1831	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.040000	0.547264	
mm_28053.1	chr3	84155679	84155879	-	1	NA	NA	NA	7	NM_029797	76915	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	0.065000	0.676617	
mm_147589.1	chr18	56562172	56562372	-	1	NA	NA	NA	26	NM_138600	110695	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	0.060000	0.676617	
mm_20429.1	chr2	129305819	129306019	-	1	NA	NA	NA	4053	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.005000	0.398010	
mm_14761.1	chr2	145167640	145167840	+	1	NA	NA	NA	-74871	NM_053195	94249	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.160000	0.830846	
mm_71948.1	chr8	70439692	70439892	+	1	NA	NA	NA	-219	NM_001004062	382056	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	0.115000	0.701493	
mm_44650.1	chr5	28209951	28210151	-	1	NA	NA	NA	117	NM_001310511	269637	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.060000	0.567164	
mm_122467.1	chr14	45529938	45530138	-	1	NA	NA	NA	27	NM_146054	218952	Mm.210018	NM_146054	ENSMUSG00000037712	Fermt2	AA960555|Kindlin-2|Mig2|Plekhc1	fermitin family member 2	protein-coding	0.125000	0.781095	
mm_117416.1	chr13	74317123	74317323	-	1	NA	NA	NA	103	NM_011051	18570	Mm.24254	NM_011051	ENSMUSG00000021576	Pdcd6	AV299538|Alg2|MA-3|PS2|alg-2	programmed cell death 6	protein-coding	0.050000	0.651741	
mm_171124.1	chr3	144596721	144596921	+	1	NA	NA	NA	26394	NM_053102	93684	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.020000	0.402985	
mm_46963.1	chr5	115147923	115148123	-	1	NA	NA	NA	10153	NM_175403	109154	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0.020000	0.537313	
mm_123257.1	chr14	61046769	61046969	-	1	NA	NA	NA	-14	NM_013869	29820	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.065000	0.562189	-33(CTTTTTAAAACG,+,0.00)
mm_128505.1	chr15	53151825	53152025	-	1	NA	NA	NA	194258	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.015000	0.358209	
mm_150469.1	chr19	38480906	38481106	+	1	NA	NA	NA	-43191	NM_019588	74055	Mm.34031	NM_019588	ENSMUSG00000024998	Plce1	4933403A21Rik|PLCepsilon|Plce|mKIAA1516	phospholipase C, epsilon 1	protein-coding	0.145000	0.825871	
mm_38470.1	chr4	140653875	140654075	-	1	NA	NA	NA	-5219	NM_172415	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.020000	0.567164	
mm_68276.1	chr7	105598717	105598917	-	1	NA	NA	NA	1299	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.010000	0.417910	
mm_74714.1	chr8	17333215	17333415	-	1	NA	NA	NA	202070	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.000000	0.462687	
mm_102904.1	chr11	69554691	69554891	-	1	NA	NA	NA	5446	NM_007911	13643	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	0.000000	0.562189	
mm_114710.1	chr13	83572302	83572502	+	1	NA	NA	NA	-1205	NM_001347577	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.015000	0.492537	
mm_16086.1	chr2	168766044	168766244	+	1	NA	NA	NA	1057	NM_201395	99377	Mm.434054	NM_175303	ENSMUSG00000027547	Sall4	5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20	sal-like 4 (Drosophila)	protein-coding	0.085000	0.631841	
mm_137615.1	chr17	28272023	28272223	+	1	NA	NA	NA	415	NR_045427	69050	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0.025000	0.626866	
mm_100707.1	chr11	3648969	3649169	-	1	NA	NA	NA	-255	NR_002321	544752	Mm.390314	NR_002321	ENSMUSG00000056579	Tug1	AI316828	taurine upregulated gene 1	ncRNA	0.100000	0.641791	15(GGCCATTTAAAG,-,0.00),17(CCATTTAAAGGA,+,0.00)
mm_28182.1	chr3	88027134	88027334	-	1	NA	NA	NA	277	NM_022031	73940	Mm.294467	NM_022031	ENSMUSG00000004894	Hapln2	4930401E20Rik|Bral1	hyaluronan and proteoglycan link protein 2	protein-coding	0.020000	0.527363	
mm_116182.1	chr13	30973935	30974135	-	1	NA	NA	NA	12	NM_025588	66482	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.130000	0.716418	
mm_143751.1	chr17	81582045	81582245	-	1	NA	NA	NA	156242	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.015000	0.338308	
mm_168180.1	chr10	56497556	56497756	+	1	NA	NA	NA	120356	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.010000	0.457711	
mm_125606.1	chr15	60822859	60823059	+	1	NA	NA	NA	-6	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0.070000	0.616915	
mm_100870.1	chr11	5914998	5915198	-	1	NA	NA	NA	37	NM_001287386	103988	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	0.015000	0.567164	
mm_10913.1	chr2	25373137	25373337	+	1	NA	NA	NA	1202	NM_001081085	72080	Mm.250293	NM_001081085	ENSMUSG00000026955	Sapcd2	2010317E24Rik|6030458L21Rik|AL033337|ang	suppressor APC domain containing 2	protein-coding	0.020000	0.572139	
mm_86435.1	chr10	3872684	3872884	+	1	NA	NA	NA	117	NM_001033253	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.025000	0.582090	
mm_150623.1	chr19	41264049	41264249	+	1	NA	NA	NA	-145	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.145000	0.781095	
mm_79719.1	chr9	61435657	61435857	+	1	NA	NA	NA	63391	NM_001083927	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.010000	0.522388	-33(CTCTATAAAAAG,-,0.00)
mm_73038.1	chr8	94227473	94227673	+	1	NA	NA	NA	12972	NM_172410	71805	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0.005000	0.412935	
mm_37704.1	chr4	129377786	129377986	-	1	NA	NA	NA	142	NM_028603	73680	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	0.075000	0.582090	
mm_77047.1	chr8	109575871	109576071	-	1	NA	NA	NA	3201	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.040000	0.616915	
mm_140479.1	chr17	3082756	3082956	-	1	NA	NA	NA	1327	NR_003519	328734	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.015000	0.592040	
mm_19803.1	chr2	110305563	110305763	-	1	NA	NA	NA	62	NM_130452	170442	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	0.005000	0.467662	
mm_163214.1	chr11	100622765	100622965	+	1	NA	NA	NA	-90	NM_028024	71966	Mm.274734	NM_028024	ENSMUSG00000017837	Nkiras2	2410003M04Rik|4930527H08Rik|D630018G21Rik|KBRAS2	NFKB inhibitor interacting Ras-like protein 2	protein-coding	0.085000	0.641791	
mm_103340.1	chr11	74705524	74705724	-	1	NA	NA	NA	18234	NR_037610	18472	Mm.397111	NM_013625	ENSMUSG00000020745	Pafah1b1	LIS-1|Lis1|MMS10-U|Mdsh|Ms10u|Pafaha	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	protein-coding	0.005000	0.338308	
mm_143844.1	chr17	84128289	84128489	-	1	NA	NA	NA	49729	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.015000	0.497512	
mm_48618.1	chr5	144761539	144761739	-	1	NA	NA	NA	-61	NM_177735	243339	Mm.126793	NM_177735	ENSMUSG00000043388	Tmem130	BC067004|C130036G08	transmembrane protein 130	protein-coding	0.075000	0.681592	
mm_34950.1	chr4	155962215	155962415	+	1	NA	NA	NA	3	NM_026125	67389	Mm.29140	NM_026125	ENSMUSG00000023571	Fam132a	1110035L05Rik|C1qdc2|CTRP12|alipolin	family with sequence similarity 132, member A	protein-coding	0.070000	0.696517	
mm_137405.1	chr17	25985730	25985930	+	1	NA	NA	NA	44	NM_001347334	50817	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	0.105000	0.671642	
mm_110649.1	chr12	59011915	59012115	-	1	NA	NA	NA	2	NM_009147	20334	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	0.095000	0.721393	
mm_72700.1	chr8	84977921	84978121	+	1	NA	NA	NA	727	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.085000	0.686567	
mm_22377.1	chr2	181156650	181156850	-	1	NA	NA	NA	265	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.075000	0.621891	
mm_26854.1	chr3	14808266	14808466	-	1	NA	NA	NA	-1	NM_009799	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.005000	0.477612	-33(TTGTATATAAGC,-,0.00)
mm_39135.1	chr4	155197473	155197673	-	1	NA	NA	NA	24962	NM_011385	20481	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.000000	0.358209	54(TCTTTTATACTC,+,0.00)
mm_41796.1	chr5	103753590	103753790	+	1	NA	NA	NA	-472	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.045000	0.572139	
mm_34309.1	chr4	141814885	141815085	+	1	NA	NA	NA	11020	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.010000	0.452736	
mm_18405.1	chr2	60370243	60370443	-	1	NA	NA	NA	12888	NM_013825	17076	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	0.010000	0.422886	-33(CCTTATAAAACA,+,0.00)
mm_139048.1	chr17	46253884	46254084	+	1	NA	NA	NA	-181	NM_001111142	224813	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0.115000	0.746269	
mm_75508.1	chr8	54412251	54412451	-	1	NA	NA	NA	117647	NM_029701	76687	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.005000	0.368159	
mm_135596.1	chr16	50732115	50732315	-	1	NA	NA	NA	558	NR_028300	68190	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0.055000	0.542289	
mm_36253.1	chr4	63409917	63410117	-	1	NA	NA	NA	-6572	NM_001045514	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.040000	0.597015	
mm_39473.1	chr5	19952558	19952758	+	1	NA	NA	NA	45140	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.000000	0.323383	
mm_50443.1	chr6	48874087	48874287	+	1	NA	NA	NA	-21068	NM_029638	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.015000	0.537313	
mm_153428.1	chr19	40821402	40821602	-	1	NA	NA	NA	-9777	NM_172839	240665	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.005000	0.497512	
mm_106282.1	chr11	118147919	118148119	-	1	NA	NA	NA	-18800	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.020000	0.517413	
mm_140832.1	chr17	23645187	23645387	-	1	NA	NA	NA	-18	NM_001320258	240047	Mm.235343	NM_001033339	ENSMUSG00000023903	Mmp25	F730048C11Rik|Leukolysin|MMP20|MT6-MMP	matrix metallopeptidase 25	protein-coding	0.075000	0.676617	
mm_86548.1	chr10	10184503	10184703	+	1	NA	NA	NA	-283563	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0.015000	0.497512	
mm_96620.1	chr11	69126010	69126210	+	1	NA	NA	NA	-267	NM_011786	23801	Mm.41989	NM_011786	ENSMUSG00000020892	Aloxe3	e-LOX-3|eLOX-3	arachidonate lipoxygenase 3	protein-coding	0.020000	0.562189	
mm_106456.1	chr11	120020047	120020247	-	1	NA	NA	NA	-5285	NR_029767	723844		NR_029767	ENSMUSG00000065600	Mir338	Mirn338|mir-338|mmu-mir-338	microRNA 338	ncRNA	0.025000	0.626866	
mm_129968.1	chr15	85703883	85704083	-	1	NA	NA	NA	210	NR_110483	102800312	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0.020000	0.572139	
mm_159656.1	chr4	147702465	147702665	-	1	NA	NA	NA	66	NM_001127188	100503584	Mm.276881	NM_001127188	ENSMUSG00000062518	Zfp534	Gm13159|OTTMUSG00000010681	zinc finger protein 534	protein-coding	0.015000	0.527363	
mm_88336.1	chr10	75574113	75574313	+	1	NA	NA	NA	718	NM_008116	14598	Mm.4559	NM_008116	ENSMUSG00000006345	Ggt1	CD224|GGT|GGT 1|GGT-1|Ggtp|dwg	gamma-glutamyltransferase 1	protein-coding	0.015000	0.562189	
mm_49200.1	chr6	15326798	15326998	+	1	NA	NA	NA	141392	NM_001286607	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.000000	0.288557	
mm_44476.1	chr5	23433773	23433973	-	1	NA	NA	NA	480	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.100000	0.641791	
mm_84860.1	chr9	78584982	78585182	-	1	NA	NA	NA	2963	NM_172773	235504	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.030000	0.482587	
mm_123575.1	chr14	67000348	67000548	-	1	NA	NA	NA	8429	NM_009761	12177	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0.020000	0.447761	
mm_125259.1	chr15	35371024	35371224	+	1	NA	NA	NA	-422	NM_177151	666173	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0.045000	0.502488	
mm_69867.1	chr7	141455275	141455475	-	1	NA	NA	NA	187	NM_001163689	66853	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0.080000	0.656716	
mm_135779.1	chr16	56885862	56886062	-	1	NA	NA	NA	201	NM_019631	56277	Mm.262328	NM_019631	ENSMUSG00000022754	Tmem45a	C630002M10Rik|M32486|p19.5	transmembrane protein 45a	protein-coding	0.010000	0.472637	
mm_4620.1	chr1	178820941	178821141	+	1	NA	NA	NA	291916	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.025000	0.507463	
mm_159336.1	chr3	41744406	41744606	+	1	NA	NA	NA	1888	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.000000	0.303483	
mm_29724.1	chr3	125938429	125938629	-	1	NA	NA	NA	21	NM_011674	22239	Mm.306021	NM_011674	ENSMUSG00000032854	Ugt8a	AI850488|AW455908|Cgt|Ugt8|mCerGT	UDP galactosyltransferase 8A	protein-coding	0.165000	0.776119	
mm_82397.1	chr9	14740572	14740772	-	1	NA	NA	NA	61	NM_177905	330890	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	0.050000	0.582090	
mm_103696.1	chr11	79516224	79516424	-	1	NA	NA	NA	7438	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.000000	0.412935	
mm_30750.1	chr4	14914354	14914554	+	1	NA	NA	NA	-16187	NM_001243100	100038514	Mm.331495	NM_001243100		Gm11837	OTTMUSG00000004551	predicted gene 11837	protein-coding	0.000000	0.253731	
mm_134068.1	chr16	8637583	8637783	-	1	NA	NA	NA	18	NM_025708	66690	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	0.045000	0.492537	
mm_150663.1	chr19	41981644	41981844	+	1	NA	NA	NA	-19	NM_145500	226122	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0.090000	0.731343	
mm_8177.1	chr1	138078467	138078667	-	1	NA	NA	NA	96559	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.383085	
mm_145425.1	chr18	58612730	58612930	+	1	NA	NA	NA	-46652	NM_025478	66307	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	0.015000	0.328358	
mm_155676.1	chrX	91181345	91181545	+	1	NA	NA	NA	26277	NR_126535	101055749	Mm.300769	NR_126535	ENSMUSG00000059972	LOC101055749	-	Gm5941 pseudogene	pseudo	0.000000	0.348259	
mm_48774.1	chr5	148509273	148509473	-	1	NA	NA	NA	43415	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.015000	0.527363	
mm_152235.1	chr19	8709502	8709702	-	1	NA	NA	NA	4295	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.015000	0.532338	
mm_132993.1	chr16	55526164	55526364	+	1	NA	NA	NA	31533	NR_039578	100628589		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.015000	0.388060	-33(TCCTATAAAGAG,+,0.00),-33(TCCTATAAAGAG,-,0.00)
mm_122024.1	chr14	28969278	28969478	-	1	NA	NA	NA	-48830	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding	0.010000	0.467662	
mm_77736.1	chr8	126908138	126908338	-	1	NA	NA	NA	37683	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.040000	0.562189	
mm_106959.1	chr12	8921609	8921809	+	1	NA	NA	NA	402	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.080000	0.572139	
mm_107725.1	chr12	57230333	57230533	+	1	NA	NA	NA	8	NM_001164370	73490	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0.150000	0.716418	
mm_21927.1	chr2	166996139	166996339	-	1	NA	NA	NA	60	NM_011490	20853	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen (RNA binding protein) homolog 1 (Drosophila)	protein-coding	0.120000	0.771144	
mm_163824.1	chr14	19416779	19416979	-	1	NA	NA	NA	185708	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.348259	
mm_49276.1	chr6	17636937	17637137	+	1	NA	NA	NA	-61	NM_007604	12343	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.130000	0.761194	
mm_152351.1	chr19	9992875	9993075	-	1	NA	NA	NA	8658	NM_011913	24115	Mm.31577	NM_011913	ENSMUSG00000037418	Best1	Bmd|Vmd2|mBest1	bestrophin 1	protein-coding	0.050000	0.611940	
mm_68845.1	chr7	126364816	126365016	-	1	NA	NA	NA	3129	NR_106025	102466797		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.000000	0.542289	
mm_49952.1	chr6	40480210	40480410	+	1	NA	NA	NA	8842	NM_001286663	381760	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	0.010000	0.353234	
mm_6844.1	chr1	84236830	84237030	-	1	NA	NA	NA	-17969	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.303483	
mm_51804.1	chr6	88724609	88724809	+	1	NA	NA	NA	5	NM_001166251	23945	Mm.272197	NM_011844	ENSMUSG00000033174	Mgll	AA589436|Magl|Mgl	monoglyceride lipase	protein-coding	0.130000	0.686567	
mm_112373.1	chr12	119210156	119210356	-	1	NA	NA	NA	28020	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.000000	0.338308	
mm_69049.1	chr7	126861609	126861809	-	1	NA	NA	NA	-246	NM_153580	233875	Mm.486253	NM_153580	ENSMUSG00000030689	Ino80e	AI225782|AI854876|Ccdc85|Ccdc95	INO80 complex subunit E	protein-coding	0.060000	0.557214	
mm_120656.1	chr14	70531607	70531807	+	1	NA	NA	NA	886	NM_145219	213469	Mm.41708	NM_145219	ENSMUSG00000033595	Lgi3	AI841179|AW049851	leucine-rich repeat LGI family, member 3	protein-coding	0.005000	0.601990	
mm_58492.1	chr7	3694489	3694689	+	1	NA	NA	NA	81	NM_024168	66078	Mm.379100	NM_024168	ENSMUSG00000035585	Tsen34	0610027F08Rik|Leng5	tRNA splicing endonuclease subunit 34	protein-coding	0.095000	0.716418	
mm_125055.1	chr15	25909972	25910172	+	1	NA	NA	NA	-23480	NM_001277318	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.010000	0.378109	-34(GGTTCTTTAAGG,-,0.00)
mm_152883.1	chr19	24555754	24555954	-	1	NA	NA	NA	-27	NM_008846	18719	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	0.125000	0.771144	
mm_97428.1	chr11	78073131	78073331	+	1	NA	NA	NA	10	NR_105850	102466649		NR_105850	ENSMUSG00000104813	Mir451b	mmu-mir-451b	microRNA 451b	ncRNA	0.020000	0.527363	
mm_39239.1	chr5	3270280	3270480	+	1	NA	NA	NA	-73513	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.020000	0.542289	
mm_41030.1	chr5	85778185	85778385	+	1	NA	NA	NA	287298	NM_001345902	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0.005000	0.472637	-34(GAGTATAAATAG,-,0.00)
mm_124104.1	chr14	79300983	79301183	-	1	NA	NA	NA	552	NM_025427	66214	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	0.075000	0.611940	
mm_12534.1	chr2	72285627	72285827	+	1	NA	NA	NA	26	NM_178084	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.145000	0.756219	
mm_75057.1	chr8	33642284	33642484	-	1	NA	NA	NA	-408	NM_178648	108159	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	0.025000	0.537313	
mm_65449.1	chr7	25412712	25412912	-	1	NA	NA	NA	74	NM_153576	232983	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0.000000	0.457711	5(GCCTTTAAGAAC,-,0.00),6(CCTTTAAGAACC,+,0.00)
mm_79432.1	chr9	56027423	56027623	+	1	NA	NA	NA	-113	NR_033529	665005	Mm.384788	NR_033529		Gm7444	EG665005	ring finger protein 19A pseudogene	pseudo	0.065000	0.636816	
mm_152370.1	chr19	10183363	10183563	-	1	NA	NA	NA	575	NM_146094	76267	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0.045000	0.587065	
mm_89221.1	chr10	86908621	86908821	+	1	NA	NA	NA	99221	NM_138673	192188	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.045000	0.587065	
mm_155269.1	chrX	59179525	59179725	+	1	NA	NA	NA	-13537	NM_001290415	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding	0.010000	0.487562	
mm_74708.1	chr8	17114964	17115164	-	1	NA	NA	NA	420321	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.000000	0.358209	
mm_72943.1	chr8	91759080	91759280	+	1	NA	NA	NA	42474	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.020000	0.522388	
mm_99048.1	chr11	99041818	99042018	+	1	NA	NA	NA	658	NM_010517	16010	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.015000	0.557214	
mm_118845.1	chr14	25663137	25663337	+	1	NA	NA	NA	-30933	NM_134084	105675	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.010000	0.582090	
mm_157455.1	chrX	43428852	43429052	-	1	NA	NA	NA	-154168	NM_011855	23963	Mm.327698	NM_011855	ENSMUSG00000016150	Tenm1	Odz1|Odz2|TCAP-1|Ten-m1|ten-1	teneurin transmembrane protein 1	protein-coding	0.090000	0.641791	
mm_158878.1	chrY	4167748	4167948	-	1	NA	NA	NA	396175	NM_011253	19657	Mm.4711	NM_011253	ENSMUSG00000094658	Rbmy	RBM|Rbm1|Rbm1-rs1|Rbmy1a1|Rbmy1a1-rs1|Rbmy1b	RNA binding motif protein, Y chromosome	protein-coding	0.005000	0.358209	
mm_100264.1	chr11	117333383	117333583	+	1	NA	NA	NA	1170	NM_001113488	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.025000	0.527363	
mm_11791.1	chr2	43128684	43128884	+	1	NA	NA	NA	-426541	NM_001289593	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.010000	0.492537	
mm_137886.1	chr17	31677832	31678032	+	1	NA	NA	NA	1	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.025000	0.537313	-33(GCATATATAGGG,+,0.00),-33(GCATATATAGGG,-,0.00)
mm_71053.1	chr8	33697589	33697789	+	1	NA	NA	NA	-34225	NM_001167921	68153	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	0.000000	0.407960	
mm_57733.1	chr6	128970197	128970397	-	1	NA	NA	NA	-863	NM_001168224	70809	Mm.439891	NM_027562	ENSMUSG00000000248	Clec2g	4632413B12Rik|Clr-c|Clr-d|Clrc|Clrd|Clrx|Ddv10|Ocilrp1	C-type lectin domain family 2, member g	protein-coding	0.005000	0.398010	-77(TTCTATATAAAC,-,0.00)
mm_114288.1	chr13	58806493	58806693	+	1	NA	NA	NA	24	NM_008745	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.085000	0.597015	-13(CCTTTTAAATGA,+,0.00)
mm_39949.1	chr5	32001278	32001478	+	1	NA	NA	NA	-135094	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.020000	0.562189	
mm_114852.1	chr13	93102882	93103082	+	1	NA	NA	NA	8149	NR_046182	408254	Mm.474857	NR_046182		A630019I02Rik	-	RIKEN cDNA A630019I02 gene	ncRNA	0.005000	0.502488	
mm_23323.1	chr3	53463801	53464001	+	1	NA	NA	NA	84	NM_173382	212127	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	0.140000	0.726368	
mm_66229.1	chr7	35056474	35056674	-	1	NA	NA	NA	-8	NM_009884	12611	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.150000	0.696517	
mm_172924.1	chr9	69453618	69453818	+	1	NA	NA	NA	35	NM_007585	12306	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	0.100000	0.726368	-55(GGGTATAAAAGC,-,0.00)
mm_29492.1	chr3	115887907	115888107	-	1	NA	NA	NA	52	NR_027894	68161	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.075000	0.641791	
mm_100271.1	chr11	117665409	117665609	+	1	NA	NA	NA	11220	NM_198022	217351	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.010000	0.383085	-1(TCTTTAATACAG,+,0.00)
mm_135354.1	chr16	43861881	43862081	-	1	NA	NA	NA	27695	NM_029128	106248	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrtd1	3110012M05Rik|4930470H18Rik|AI648807|Qtrt2	queuine tRNA-ribosyltransferase domain containing 1	protein-coding	0.005000	0.313433	25(TTTTTTAAGGAG,+,0.00)
mm_58873.1	chr7	16983078	16983278	+	1	NA	NA	NA	-11410	NM_001101535	434130	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	ENSMUSG00000041117	coiled-coil domain containing 8	protein-coding	0.040000	0.611940	
mm_83556.1	chr9	46242638	46242838	-	1	NA	NA	NA	1894	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.040000	0.582090	
mm_150198.1	chr19	32757482	32757682	+	1	NA	NA	NA	5	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.110000	0.696517	
mm_51269.1	chr6	72104104	72104304	+	1	NA	NA	NA	6596	NM_011375	20454	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.000000	0.378109	
mm_72540.1	chr8	83997209	83997409	+	1	NA	NA	NA	-363	NM_001081415	666704	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.145000	0.791045	
mm_50356.1	chr6	48601922	48602122	+	1	NA	NA	NA	8139	NM_001079904	58887	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	0.090000	0.681592	
mm_89930.1	chr10	111233610	111233810	+	1	NA	NA	NA	-64969	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.010000	0.522388	61(CTGTTTATATGG,-,0.00)
mm_170773.1	chr2	163645019	163645219	-	1	NA	NA	NA	24	NM_012032	26943	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	0.110000	0.686567	
mm_105827.1	chr11	113172855	113173055	-	1	NA	NA	NA	28883	NR_015556	72386	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.030000	0.552239	
mm_73607.1	chr8	110039364	110039564	+	1	NA	NA	NA	-130	NM_011998	26887	Mm.89207	NM_011998	ENSMUSG00000035930	Chst4	GST-3|Gn6st-2|HEC-GlcNAc6ST	carbohydrate (chondroitin 6/keratan) sulfotransferase 4	protein-coding	0.015000	0.552239	
mm_51680.1	chr6	86443741	86443941	+	1	NA	NA	NA	5195	NM_001243741	232196	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	0.010000	0.492537	
mm_92061.1	chr10	62513444	62513644	-	1	NA	NA	NA	-5789	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.030000	0.487562	55(CTCTTTAGAGAG,+,0.00)
mm_112610.1	chr13	14630167	14630367	+	1	NA	NA	NA	9	NM_134067	105351	Mm.41450	NM_134067	ENSMUSG00000039182	AW209491	-	expressed sequence AW209491	protein-coding	0.060000	0.621891	
mm_105590.1	chr11	106732451	106732651	-	1	NA	NA	NA	-17270	NM_001305157	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.030000	0.462687	
mm_69391.1	chr7	131410236	131410436	-	1	NA	NA	NA	142	NM_175115	67143	Mm.334273	NM_175115	ENSMUSG00000040167	Ikzf5	2610034F18Rik|PEGASUS|Zfpn1a5	IKAROS family zinc finger 5	protein-coding	0.100000	0.641791	
mm_44535.1	chr5	24526636	24526836	-	1	NA	NA	NA	112	NM_015739	231044	Mm.246596	NM_015739	ENSMUSG00000067724	Gbx1	Gbx-1	gastrulation brain homeobox 1	protein-coding	0.160000	0.776119	
mm_71553.1	chr8	48136050	48136250	+	1	NA	NA	NA	26137	NM_001161515	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	0.025000	0.452736	
mm_62130.1	chr7	97081461	97081661	+	1	NA	NA	NA	-190	NM_001162477	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.130000	0.776119	
mm_25209.1	chr3	103832691	103832891	+	1	NA	NA	NA	95	NM_001142960	229672	Mm.297245	NM_001142959	ENSMUSG00000044165	Bcl2l15	Bfk|Gm566	BCLl2-like 15	protein-coding	0.010000	0.407960	
mm_23307.1	chr3	52739631	52739831	+	1	NA	NA	NA	7	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	0.010000	0.492537	
mm_119902.1	chr14	54948061	54948261	+	1	NA	NA	NA	981	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.015000	0.562189	
mm_139867.1	chr17	70522059	70522259	+	1	NA	NA	NA	49	NM_001128180	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.040000	0.517413	36(ACCTTTTTAAGG,-,0.00),38(CTTTTTAAGGCT,+,0.00)
mm_72460.1	chr8	83251195	83251395	+	1	NA	NA	NA	-39053	NM_009463	22227	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	0.025000	0.432836	
mm_8822.1	chr1	162274524	162274724	-	1	NA	NA	NA	51256	NR_029796	387210		NR_029796	ENSMUSG00000065516	Mir214	Mirn214|mir-214|mmu-mir-214	microRNA 214	ncRNA	0.005000	0.338308	
mm_151330.1	chr19	55894354	55894554	+	1	NA	NA	NA	-867	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.015000	0.437811	
mm_158841.1	chrX	169187108	169187308	-	1	NA	NA	NA	1	NM_001290371	11704	Mm.391342	NM_009666	ENSMUSG00000031354	Amelx	ALGN|AMGL|AMGX|Amel|Amg|LRAP|Rgsc888	amelogenin, X-linked	protein-coding	0.005000	0.402985	
mm_102301.1	chr11	55607721	55607921	-	1	NA	NA	NA	377	NM_001290821	14654	Mm.89320	NM_020492	ENSMUSG00000000263	Glra1	nmf11|oscillator|ot|spasmodic|spd	glycine receptor, alpha 1 subunit	protein-coding	0.040000	0.527363	
mm_45408.1	chr5	66299828	66300028	-	1	NA	NA	NA	37737	NM_001201416	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.020000	0.293532	
mm_64702.1	chr7	4547383	4547583	-	1	NA	NA	NA	-916	NM_016908	53420	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	0.105000	0.656716	
mm_24826.1	chr3	95653657	95653857	+	1	NA	NA	NA	-4964	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.025000	0.497512	
mm_134017.1	chr16	4879782	4879982	-	1	NA	NA	NA	-31	NM_145359	207740	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.135000	0.686567	
mm_87068.1	chr10	29144020	29144220	+	1	NA	NA	NA	124	NM_026138	67412	Mm.390264	NM_026138	ENSMUSG00000038916	Soga3	6330407J23Rik	SOGA family member 3	protein-coding	0.035000	0.587065	
mm_115064.1	chr13	101060375	101060575	+	1	NA	NA	NA	-171652	NR_046158	328324	Mm.402274	NR_046158		5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA	0.005000	0.477612	-97(GTCTTTTTAAAC,-,0.00),-95(CTTTTTAAACTC,+,0.00)
mm_155261.1	chrX	57919958	57920158	+	1	NA	NA	NA	-110570	NM_009575	22773	Mm.255890	NM_009575	ENSMUSG00000067860	Zic3	Bn|Ka	zinc finger protein of the cerebellum 3	protein-coding	0.035000	0.457711	
mm_69939.1	chr7	142095213	142095413	-	1	NA	NA	NA	-29	NM_008748	18218	Mm.39725	NM_008748	ENSMUSG00000037887	Dusp8	5530400B01Rik|AI593498|Nttp1	dual specificity phosphatase 8	protein-coding	0.130000	0.756219	
mm_129884.1	chr15	83489454	83489654	-	1	NA	NA	NA	21353	NM_178869	319953	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0.060000	0.517413	
mm_19199.1	chr2	84473901	84474101	-	1	NA	NA	NA	173	NM_011576	21788	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0.045000	0.492537	-34(GCTTTAAAACCT,+,0.00)
mm_41378.1	chr5	90722277	90722477	+	1	NA	NA	NA	-36921	NM_009141	20311	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0.005000	0.373134	
mm_82192.1	chr9	123964930	123965130	+	1	NA	NA	NA	3662	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.010000	0.447761	
mm_17396.1	chr2	27142355	27142555	-	1	NA	NA	NA	22	NM_175427	109349	Mm.314080	NM_175427	ENSMUSG00000009216	Fam163b	C630035N08Rik	family with sequence similarity 163, member B	protein-coding	0.150000	0.776119	
mm_457.1	chr1	36272691	36272891	+	1	NA	NA	NA	634	NM_153408	214854	Mm.389110	NM_153408	ENSMUSG00000047180	Neurl3	2010300P06Rik|Lincr	neuralized E3 ubiquitin protein ligase 3	protein-coding	0.010000	0.537313	
mm_73288.1	chr8	104926198	104926398	+	1	NA	NA	NA	38	NM_172759	234673	Mm.441134	NM_172759	ENSMUSG00000031886	Ces2e	9030624L02Rik|Ces5	carboxylesterase 2E	protein-coding	0.005000	0.462687	
mm_98397.1	chr11	94327907	94328107	+	1	NA	NA	NA	6	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.110000	0.696517	
mm_106762.1	chr12	4507139	4507339	+	1	NA	NA	NA	-16874	NR_136891	102634330	Mm.402324	NR_136891		Gm31938	-	predicted gene, 31938	ncRNA	0.015000	0.507463	
mm_70687.1	chr8	15011285	15011485	+	1	NA	NA	NA	360	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.125000	0.711443	
mm_103249.1	chr11	70969866	70970066	-	1	NA	NA	NA	7	NM_172394	19069	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	0.075000	0.606965	
mm_114079.1	chr13	54570945	54571145	+	1	NA	NA	NA	-3968	NM_019968	56795	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0.005000	0.467662	
mm_170694.1	chr2	132285835	132286035	+	1	NA	NA	NA	-4	NM_001291039	110911	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.025000	0.502488	
mm_73919.1	chr8	119754125	119754325	+	1	NA	NA	NA	24191	NM_028883	74347	Mm.358759	NM_028883	ENSMUSG00000034105	Tldc1	4632415K11Rik|Kiaa1609	TBC/LysM associated domain containing 1	protein-coding	0.035000	0.611940	
mm_100023.1	chr11	114903452	114903652	+	1	NA	NA	NA	13511	NM_170758	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.000000	0.527363	
mm_104666.1	chr11	97629631	97629831	-	1	NA	NA	NA	-15	NM_175332	103551	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0.110000	0.721393	
mm_61100.1	chr7	51880192	51880392	+	1	NA	NA	NA	1325	NM_001330607	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.015000	0.507463	
mm_152703.1	chr19	17339570	17339770	-	1	NA	NA	NA	-165	NM_001136484	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.010000	0.512438	
mm_70378.1	chr8	10153862	10154062	+	1	NA	NA	NA	51	NM_001319151	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.110000	0.711443	
mm_68481.1	chr7	110956787	110956987	-	1	NA	NA	NA	-10700	NM_010826	17540	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0.020000	0.497512	
mm_86727.1	chr10	19062712	19062912	+	1	NA	NA	NA	-47402	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.015000	0.422886	
mm_55369.1	chr6	57703780	57703980	-	1	NA	NA	NA	1425	NM_133737	71835	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.005000	0.492537	
mm_100675.1	chr11	3409038	3409238	-	1	NA	NA	NA	100	NM_010718	16886	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.095000	0.716418	
mm_77323.1	chr8	119417886	119418086	-	1	NA	NA	NA	-19176	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.005000	0.592040	44(GACTATATAGGA,-,0.00)
mm_21427.1	chr2	158231071	158231271	-	1	NA	NA	NA	-1947	NM_177657	228846	Mm.187574	NM_177657	ENSMUSG00000037813	D630003M21Rik	-	RIKEN cDNA D630003M21 gene	protein-coding	0.025000	0.547264	
mm_142700.1	chr17	47867753	47867953	-	1	NA	NA	NA	-33162	NM_001109973	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.040000	0.562189	
mm_115024.1	chr13	99006984	99007184	+	1	NA	NA	NA	-22519	NM_027064	69382	Mm.45466	NM_027064	ENSMUSG00000045022	1700024P04Rik	H2bl1|Subh2bv	RIKEN cDNA 1700024P04 gene	protein-coding	0.025000	0.477612	-6(CTCTTTAAATGA,-,0.00)
mm_50147.1	chr6	41543534	41543734	+	1	NA	NA	NA	21858	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.045000	0.621891	
mm_15528.1	chr2	158382751	158382951	+	1	NA	NA	NA	7213	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.010000	0.288557	
mm_32668.1	chr4	115563589	115563789	+	1	NA	NA	NA	40	NM_201640	666168	Mm.482086	NM_201640	ENSMUSG00000028712	Cyp4a31	-	cytochrome P450, family 4, subfamily a, polypeptide 31	protein-coding	0.010000	0.507463	
mm_119131.1	chr14	31160587	31160787	+	1	NA	NA	NA	7954	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.030000	0.567164	
mm_126346.1	chr15	79905743	79905943	+	1	NA	NA	NA	10820	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.015000	0.457711	
mm_141815.1	chr17	34605656	34605856	-	1	NA	NA	NA	-105	NM_001163379	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.090000	0.696517	
mm_27176.1	chr3	34078965	34079165	-	1	NA	NA	NA	2289	NM_001286972	67713	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.015000	0.412935	
mm_37904.1	chr4	132732476	132732676	-	1	NA	NA	NA	-30	NM_201368	381560	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	0.090000	0.751244	
mm_157010.1	chrX	7605288	7605488	-	1	NA	NA	NA	32	NM_138603	54638	Mm.288192	NM_138603	ENSMUSG00000031143	Ccdc22	AI481216|DXImx40e|Ppp1r3f|Sfc22	coiled-coil domain containing 22	protein-coding	0.085000	0.587065	
mm_75306.1	chr8	41133626	41133826	-	1	NA	NA	NA	0	NM_001005863	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.105000	0.766169	
mm_109926.1	chr12	8673979	8674179	-	1	NA	NA	NA	-55	NM_001160221	80913	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.140000	0.741294	
mm_74167.1	chr8	123420536	123420736	+	1	NA	NA	NA	9072	NM_023279	22152	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	0.030000	0.572139	
mm_2862.1	chr1	131712526	131712726	+	1	NA	NA	NA	23931	NM_001311096	226421	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0.000000	0.477612	15(GCTTTTAGGCTG,+,0.00),41(CACTTGAAAAGC,-,0.00)
mm_142704.1	chr17	47878781	47878981	-	1	NA	NA	NA	-44190	NM_001109973	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.080000	0.676617	
mm_40020.1	chr5	33335456	33335656	+	1	NA	NA	NA	-16	NM_021500	59003	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	0.110000	0.681592	
mm_122221.1	chr14	32460809	32461009	-	1	NA	NA	NA	3941	NM_021712	20508	Mm.190503	NM_021712	ENSMUSG00000100241	Slc18a3	VAChT|VAT	solute carrier family 18 (vesicular monoamine), member 3	protein-coding	0.030000	0.626866	
mm_42276.1	chr5	114146626	114146826	+	1	NA	NA	NA	15570	NM_011677	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.020000	0.507463	
mm_100465.1	chr11	119913728	119913928	+	1	NA	NA	NA	18	NM_001085498	208092	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.155000	0.721393	
mm_93231.1	chr10	95323480	95323680	-	1	NA	NA	NA	129	NM_001330138	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.075000	0.631841	
mm_96942.1	chr11	70540399	70540599	+	1	NA	NA	NA	227	NM_001302476	18806	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	0.075000	0.646766	
mm_146362.1	chr18	82584269	82584469	+	1	NA	NA	NA	29861	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.065000	0.567164	
mm_41052.1	chr5	86804100	86804300	+	1	NA	NA	NA	-66	NM_001347375	231386	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.120000	0.656716	
mm_65287.1	chr7	24435472	24435672	-	1	NA	NA	NA	10110	NM_199013	210145	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.015000	0.582090	
mm_161958.1	chr19	7267256	7267456	+	1	NA	NA	NA	-38	NM_054048	104383	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.090000	0.716418	
mm_118624.1	chr14	21179558	21179758	+	1	NA	NA	NA	103506	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.015000	0.407960	-57(TGGCATTAAAGG,-,0.00)
mm_134231.1	chr16	11456199	11456399	-	1	NA	NA	NA	50651	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.015000	0.527363	-34(CCCTATATAAAG,-,0.00)
mm_81543.1	chr9	110245412	110245612	+	1	NA	NA	NA	1729	NM_001166273	29873	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding	0.165000	0.800995	
mm_102034.1	chr11	51833434	51833634	-	1	NA	NA	NA	23947	NM_199299	76901	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.005000	0.552239	40(CCTCAAATGGCC,+,0.00)
mm_163538.1	chr13	13538431	13538631	-	1	NA	NA	NA	-51878	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.020000	0.537313	
mm_113640.1	chr13	42069564	42069764	+	1	NA	NA	NA	17643	NM_007772	110521	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.005000	0.363184	
mm_83896.1	chr9	56136281	56136481	-	1	NA	NA	NA	24689	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.010000	0.472637	
mm_93004.1	chr10	87007836	87008036	-	1	NA	NA	NA	6	NM_138673	192188	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.010000	0.527363	
mm_92812.1	chr10	81406051	81406251	-	1	NA	NA	NA	10146	NR_106141	102465778		NR_106141	ENSMUSG00000105379	Mir1191b	mmu-mir-1191b	microRNA 1191b	ncRNA	0.035000	0.601990	
mm_138770.1	chr17	37130782	37130982	+	1	NA	NA	NA	-18902	NM_146456	258448	Mm.377508	NM_146456	ENSMUSG00000096477	Olfr92	MOR256-29|bM573K1.4	olfactory receptor 92	protein-coding	0.025000	0.477612	
mm_23714.1	chr3	69005030	69005230	+	1	NA	NA	NA	158	NM_133786	70099	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	0.100000	0.711443	
mm_88892.1	chr10	81137913	81138113	+	1	NA	NA	NA	1742	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.165000	0.800995	
mm_170328.1	chr18	43171030	43171230	+	1	NA	NA	NA	-36567	NM_178749	269019	Mm.150401	NM_178749	ENSMUSG00000039954	Stk32a	A930015B13Rik|YANK1	serine/threonine kinase 32A	protein-coding	0.080000	0.567164	
mm_67291.1	chr7	78835691	78835891	-	1	NA	NA	NA	11420	NM_029585	76375	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	0.005000	0.492537	
mm_8123.1	chr1	136135063	136135263	-	1	NA	NA	NA	3762	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.005000	0.512438	
mm_106793.1	chr12	4817462	4817662	+	1	NA	NA	NA	-46	NM_025323	66055	Mm.102627	NM_025323	ENSMUSG00000037361	Sf3b6	0610009D07Rik|6030419K15Rik|AV001342|Sf3b14	splicing factor 3B, subunit 6	protein-coding	0.075000	0.557214	
mm_20651.1	chr2	132060686	132060886	-	1	NA	NA	NA	-30798	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.060000	0.562189	
mm_31365.1	chr4	47287969	47288169	+	1	NA	NA	NA	-65153	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.000000	0.532338	-34(GAGTCTAAAAGG,-,0.00)
mm_92619.1	chr10	80160814	80161014	-	1	NA	NA	NA	-6927	NM_007705	12696	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.040000	0.582090	
mm_140930.1	chr17	24316222	24316422	-	1	NA	NA	NA	30930	NM_001031621	381072	Mm.328842	NM_001031621	ENSMUSG00000035435	Abca17	-	ATP-binding cassette, sub-family A (ABC1), member 17	protein-coding	0.010000	0.422886	
mm_94654.1	chr11	17051850	17052050	+	1	NA	NA	NA	16	NM_029861	380686	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	0.050000	0.666667	
mm_43280.1	chr5	131494778	131494978	+	1	NA	NA	NA	-187356	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.020000	0.527363	
mm_57318.1	chr6	124729886	124730086	-	1	NA	NA	NA	3168	NM_013545	15170	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.020000	0.537313	
mm_98480.1	chr11	94950753	94950953	+	1	NA	NA	NA	14629	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.030000	0.527363	
mm_160199.1	chr7	79713873	79714073	-	1	NA	NA	NA	213	NM_010626	16576	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0.040000	0.601990	
mm_103720.1	chr11	79530329	79530529	-	1	NA	NA	NA	180	NM_146023	101488212	Mm.439665	NM_146023	ENSMUSG00000070354	Gm21975	Evi2a-evi2b	predicted gene 21975	protein-coding	0.020000	0.432836	-52(CTCTTTAAAAAA,-,0.00)
mm_54319.1	chr6	30253955	30254155	-	1	NA	NA	NA	-10252	NM_001169577	22214	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0.010000	0.527363	
mm_80451.1	chr9	77979822	77980022	+	1	NA	NA	NA	62557	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.025000	0.532338	
mm_36719.1	chr4	98702360	98702560	-	1	NA	NA	NA	-24294	NM_001081202	381591	Mm.34340	NM_001081202	ENSMUSG00000087166	L1td1	AA546746|AB211064|D76865|ECAT11	LINE-1 type transposase domain containing 1	protein-coding	0.025000	0.482587	-46(CAGCATAAAAGC,-,0.00),-24(TAGCATAAAAGC,-,0.00)
mm_96271.1	chr11	62820380	62820580	+	1	NA	NA	NA	227	NM_053169	94092	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	0.040000	0.606965	
mm_170253.1	chr18	10271336	10271536	-	1	NA	NA	NA	-53743	NM_001083628	381157	Mm.261535	NM_001083628	ENSMUSG00000042942	Greb1l	mKIAA4095	growth regulation by estrogen in breast cancer-like	protein-coding	0.035000	0.507463	-28(CTTTAAATACCC,+,0.00)
mm_72598.1	chr8	84414646	84414846	+	1	NA	NA	NA	-618	NM_001252060	12286	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.120000	0.706468	
mm_97221.1	chr11	75636733	75636933	+	1	NA	NA	NA	5813	NM_008916	19062	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.030000	0.512438	
mm_26219.1	chr3	138813431	138813631	+	1	NA	NA	NA	71323	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.025000	0.472637	-99(CCTTTAAAGGTT,+,0.00)
mm_168454.1	chr11	41224070	41224270	+	1	NA	NA	NA	-468884	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.030000	0.487562	-31(CTTTAAATACCC,+,0.00)
mm_46607.1	chr5	107869202	107869402	-	1	NA	NA	NA	5805	NM_007964	14020	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0.095000	0.706468	
mm_122183.1	chr14	31591239	31591439	-	1	NA	NA	NA	-13956	NM_009937	382864	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.010000	0.557214	
mm_124921.1	chr15	12117953	12118153	+	1	NA	NA	NA	202	NM_011767	22763	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.125000	0.786070	
mm_62968.1	chr7	119861409	119861609	+	1	NA	NA	NA	33949	NM_173408	233805	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0.010000	0.398010	
mm_162297.1	chr1	33899165	33899365	+	1	NA	NA	NA	8356	NM_177235	320705	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.005000	0.492537	-35(CCCCATATAAAA,-,0.00)
mm_152041.1	chr19	6128068	6128268	-	1	NA	NA	NA	47	NM_026912	69024	Mm.329629	NM_026912	ENSMUSG00000024787	Snx15	1500032B08Rik|E130013C21Rik	sorting nexin 15	protein-coding	0.085000	0.661692	
mm_24948.1	chr3	96629800	96630000	+	1	NA	NA	NA	-28	NM_025875	60365	Mm.261972	NM_025875	ENSMUSG00000038374	Rbm8a	2310057C03Rik|AA673428|Rbm8	RNA binding motif protein 8a	protein-coding	0.085000	0.567164	
mm_76973.1	chr8	106288729	106288929	-	1	NA	NA	NA	6600	NR_126090	75044	Mm.445896	NR_126090		4930506A18Rik	-	RIKEN cDNA 4930506A18 gene	ncRNA	0.015000	0.567164	-34(GGCTATAAAAGG,-,0.00)
mm_53024.1	chr6	124320432	124320632	+	1	NA	NA	NA	15881	NM_053094	93671	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.020000	0.547264	
mm_72438.1	chr8	83153117	83153317	+	1	NA	NA	NA	-12135	NM_001111304	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.015000	0.422886	
mm_6267.1	chr1	69548622	69548822	-	1	NA	NA	NA	137238	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.015000	0.477612	
mm_12204.1	chr2	65931985	65932185	+	1	NA	NA	NA	220	NM_001290665	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding	0.025000	0.482587	85(TCATTTAAAGTG,+,0.00)
mm_79065.1	chr9	46233061	46233261	+	1	NA	NA	NA	2138	NM_001289833	11814	Mm.390161	NM_023114	ENSMUSG00000032081	Apoc3	apo-CIII|apoC-III	apolipoprotein C-III	protein-coding	0.005000	0.522388	-27(TCCCCTTAAAGC,-,0.00)
mm_96885.1	chr11	70432567	70432767	+	1	NA	NA	NA	87	NM_001271358	216869	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872	arrestin, beta 2	protein-coding	0.130000	0.741294	
mm_126340.1	chr15	79900203	79900403	+	1	NA	NA	NA	5280	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.010000	0.567164	
mm_32905.1	chr4	119108704	119108904	+	1	NA	NA	NA	59	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.085000	0.646766	-34(TCCTATAAAAAG,-,0.00)
mm_148901.1	chr19	6910448	6910648	+	1	NA	NA	NA	850	NM_026306	67674	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.075000	0.616915	
mm_58173.1	chr6	142702248	142702448	-	1	NA	NA	NA	-74	NM_001310143	20928	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0.065000	0.681592	
mm_15754.1	chr2	164254476	164254676	+	1	NA	NA	NA	2067	NM_173377	329557	Mm.118769	NM_173377	ENSMUSG00000050383	Svs3b	9530004A22Rik	seminal vesicle secretory protein 3B	protein-coding	0.000000	0.373134	-6(TTTTTTAAAGCA,+,0.00)
mm_117889.1	chr13	99422598	99422798	-	1	NA	NA	NA	-9872	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.353234	
mm_106837.1	chr12	8006523	8006723	+	1	NA	NA	NA	28946	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.487562	
mm_40112.1	chr5	34865655	34865855	+	1	NA	NA	NA	-50160	NM_207277	403174	Mm.291225	NM_207277	ENSMUSG00000051246	Msantd1	A930005I04Rik|Gm144	Myb/SANT-like DNA-binding domain containing 1	protein-coding	0.010000	0.383085	
mm_167976.1	chrX	158043035	158043235	-	1	NA	NA	NA	62	NM_001310719	245684	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding	0.145000	0.761194	
mm_81298.1	chr9	108339127	108339327	+	1	NA	NA	NA	147	NM_001329528	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.050000	0.582090	
mm_13284.1	chr2	101627314	101627514	+	1	NA	NA	NA	1572	NM_026592	68170	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding	0.000000	0.482587	
mm_70714.1	chr8	15064725	15064925	+	1	NA	NA	NA	7172	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.005000	0.487562	
mm_60131.1	chr7	37272411	37272611	+	1	NA	NA	NA	497241	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.010000	0.537313	
mm_41057.1	chr5	86804264	86804464	+	1	NA	NA	NA	98	NM_001347376	231386	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.105000	0.681592	
mm_48233.1	chr5	137706977	137707177	-	1	NA	NA	NA	-22324	NM_001303266	231801	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	0.030000	0.562189	
mm_67349.1	chr7	79827544	79827744	-	1	NA	NA	NA	14708	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.035000	0.542289	
mm_166678.1	chr6	97854644	97854844	+	1	NA	NA	NA	47686	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.010000	0.407960	
mm_124339.1	chr14	103844183	103844383	-	1	NA	NA	NA	193	NM_001136061	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.035000	0.557214	
mm_20709.1	chr2	134488657	134488857	-	1	NA	NA	NA	65595	NM_010403	15112	Mm.26634	NM_010403	ENSMUSG00000027261	Hao1	GOX|Gox1|Hao-1	hydroxyacid oxidase 1, liver	protein-coding	0.010000	0.422886	
mm_157590.1	chrX	53114417	53114617	-	1	NA	NA	NA	-112	NM_019538	56096	Mm.274842	NM_019538	ENSMUSG00000061082	Plac1	DXWsu72e|Epcs26|Oosp2l	placental specific protein 1	protein-coding	0.020000	0.482587	82(GCATATATAGAA,+,0.00)
mm_129398.1	chr15	78282953	78283153	-	1	NA	NA	NA	1796	NR_106138	102466845		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0.010000	0.437811	
mm_166367.1	chr5	124637414	124637614	+	1	NA	NA	NA	8462	NM_011596	21871	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0.030000	0.577114	
mm_172859.1	chr9	40802439	40802639	+	1	NA	NA	NA	1266	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.010000	0.457711	
mm_58712.1	chr7	12978231	12978431	+	1	NA	NA	NA	483	NM_001168561	269870	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	0.045000	0.562189	
mm_153730.1	chr19	44407792	44407992	-	1	NA	NA	NA	-183	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.030000	0.552239	
mm_119924.1	chr14	54968578	54968778	+	1	NA	NA	NA	-109	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.000000	0.557214	
mm_19241.1	chr2	84715200	84715400	-	1	NA	NA	NA	-136	NM_144887	228136	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0.165000	0.736318	
mm_16040.1	chr2	167690659	167690859	+	1	NA	NA	NA	0	NR_110334	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.030000	0.582090	
mm_82500.1	chr9	20431147	20431347	-	1	NA	NA	NA	28913	NM_011753	22688	Mm.107441	NM_011753	ENSMUSG00000063108	Zfp26	5033428C05Rik|KRAB15|Zfp-26|Zfp70|Zfp81-rs1|mKIAA4196|mkr-3|mszf14|mszf52	zinc finger protein 26	protein-coding	0.000000	0.402985	
mm_61615.1	chr7	80090505	80090705	+	1	NA	NA	NA	-15348	NR_045695	100859962	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.015000	0.616915	
mm_124995.1	chr15	23036303	23036503	+	1	NA	NA	NA	-60	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding	0.055000	0.656716	
mm_133659.1	chr16	91835265	91835465	+	1	NA	NA	NA	96265	NM_138597	28080	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.005000	0.323383	
mm_6526.1	chr1	74588121	74588321	-	1	NA	NA	NA	-68	NM_001305652	66821	Mm.358700	NM_025784	ENSMUSG00000026172	Bcs1l	9130022O19Rik	BCS1-like (yeast)	protein-coding	0.065000	0.606965	
mm_129895.1	chr15	83594980	83595180	-	1	NA	NA	NA	77	NM_183017	223723	Mm.46778	NM_183017	ENSMUSG00000016757	Ttll12	BC055368|D430005B17	tubulin tyrosine ligase-like family, member 12	protein-coding	0.150000	0.711443	
mm_103562.1	chr11	77763954	77764154	-	1	NA	NA	NA	-13181	NM_001291213	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.045000	0.626866	
mm_72525.1	chr8	83976953	83977153	+	1	NA	NA	NA	170	NM_001277898	18747	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0.015000	0.567164	
mm_28668.1	chr3	95281705	95281905	-	1	NA	NA	NA	271	NM_173347	229589	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	0.080000	0.636816	
mm_115884.1	chr13	21810095	21810295	-	1	NA	NA	NA	4	NM_001313878	665622	Mm.471247	NM_001110555	ENSMUSG00000069303	Hist1h2br	Gm11277|OTTMUSG00000000449	histone cluster 1 H2br	protein-coding	0.050000	0.537313	
mm_134865.1	chr16	28564775	28564975	-	1	NA	NA	NA	76	NM_001276419	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.160000	0.800995	
mm_54338.1	chr6	30645174	30645374	-	1	NA	NA	NA	6056	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.005000	0.502488	-60(GCCTAAATGGGG,+,0.00)
mm_168258.1	chr10	8762385	8762585	-	1	NA	NA	NA	123585	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.025000	0.487562	
mm_40760.1	chr5	66968439	66968639	+	1	NA	NA	NA	123	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.030000	0.467662	
mm_162812.1	chr10	79681729	79681929	+	1	NA	NA	NA	-366	NM_177613	216150	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|UBE2R1	cell division cycle 34	protein-coding	0.125000	0.721393	
mm_158337.1	chrX	134111677	134111877	-	1	NA	NA	NA	77	NM_172203	237038	Mm.67938	NM_172203	ENSMUSG00000031257	Nox1	GP91-2|MOX1|NOH-1|NOH1|NOX1a|NOX1alpha|Nox-1	NADPH oxidase 1	protein-coding	0.005000	0.452736	
mm_126686.1	chr15	84906562	84906762	+	1	NA	NA	NA	-16766	NM_016714	18141	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0.010000	0.457711	
mm_64334.1	chr7	142375818	142376018	+	1	NA	NA	NA	-2172	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.015000	0.507463	
mm_161018.1	chr11	120457932	120458132	-	1	NA	NA	NA	31	NM_025560	66431	Mm.45063	NM_025560	ENSMUSG00000039670	Oxld1	1810049H13Rik	oxidoreductase like domain containing 1	protein-coding	0.095000	0.691542	
mm_110770.1	chr12	70280557	70280757	-	1	NA	NA	NA	-27848	NR_037248	100526482		NR_037248	ENSMUSG00000078026	Mir466o	Mir4660|mmu-mir-466o	microRNA 466o	ncRNA	0.020000	0.502488	
mm_16678.1	chr2	6872421	6872621	-	1	NA	NA	NA	-486	NM_001347094	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.200000	0.800995	
mm_7569.1	chr1	124820414	124820614	-	1	NA	NA	NA	615213	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.005000	0.432836	
mm_103709.1	chr11	79516700	79516900	-	1	NA	NA	NA	6962	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.005000	0.358209	
mm_132111.1	chr16	31455050	31455250	+	1	NA	NA	NA	26397	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.025000	0.547264	
mm_12883.1	chr2	84733979	84734179	+	1	NA	NA	NA	-125	NM_001005342	241525	Mm.486398	NM_001005342	ENSMUSG00000034059	Ypel4	-	yippee-like 4 (Drosophila)	protein-coding	0.015000	0.611940	
mm_106336.1	chr11	118392982	118393182	-	1	NA	NA	NA	8849	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.015000	0.547264	
mm_149867.1	chr19	25148038	25148238	+	1	NA	NA	NA	-89064	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.000000	0.218905	
mm_128559.1	chr15	55907993	55908193	-	1	NA	NA	NA	-1144	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding	0.000000	0.417910	
mm_134395.1	chr16	17508782	17508982	-	1	NA	NA	NA	199	NM_025808	66863	Mm.161726	NM_025808	ENSMUSG00000022761	Lztr1	1200003E21Rik|AI591627|AW550890	leucine-zipper-like transcriptional regulator, 1	protein-coding	0.100000	0.616915	
mm_54445.1	chr6	34599784	34599984	-	1	NA	NA	NA	1380	NM_001347100	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.015000	0.447761	
mm_79821.1	chr9	64385587	64385787	+	1	NA	NA	NA	61	NM_001134399	214058	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	0.085000	0.731343	
mm_117990.1	chr13	100296316	100296516	-	1	NA	NA	NA	20200	NM_010871	17952	Mm.218759	NM_010871	ENSMUSG00000078942	Naip6	Birc1f|Naip-rs4|Naip-rs4A	NLR family, apoptosis inhibitory protein 6	protein-coding	0.015000	0.383085	
mm_37090.1	chr4	116555827	116556027	-	1	NA	NA	NA	16	NM_177670	230657	Mm.291484	NM_177670	ENSMUSG00000055900	Tmem69	A630048M13Rik	transmembrane protein 69	protein-coding	0.040000	0.507463	
mm_2401.1	chr1	93754816	93755016	+	1	NA	NA	NA	-78	NM_025920	67026	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	0.200000	0.791045	
mm_12631.1	chr2	74704962	74705162	+	1	NA	NA	NA	-427	NM_001290730	15437	Mm.280673	NM_008276	ENSMUSG00000027102	Hoxd8	4921540P06Rik|AI047735|Hox-4.3|Hox-5.4	homeobox D8	protein-coding	0.095000	0.696517	
mm_84398.1	chr9	65552150	65552350	-	1	NA	NA	NA	27837	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.020000	0.507463	
mm_41758.1	chr5	102857238	102857438	+	1	NA	NA	NA	12331	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.005000	0.363184	
mm_85571.1	chr9	107280590	107280790	-	1	NA	NA	NA	8706	NM_001316691	102626	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0.030000	0.522388	
mm_62354.1	chr7	100498793	100498993	+	1	NA	NA	NA	5535	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.030000	0.567164	
mm_151511.1	chr19	58734596	58734796	+	1	NA	NA	NA	5809	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.020000	0.522388	
mm_84612.1	chr9	70421410	70421610	-	1	NA	NA	NA	44	NM_007630	12442	Mm.22592	NM_007630	ENSMUSG00000032218	Ccnb2	CycB2	cyclin B2	protein-coding	0.140000	0.706468	
mm_142.1	chr1	10993451	10993651	+	1	NA	NA	NA	86	NM_029525	109294	Mm.123247	NM_029525	ENSMUSG00000048960	Prex2	6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	protein-coding	0.105000	0.696517	
mm_125698.1	chr15	66891443	66891643	+	1	NA	NA	NA	150	NM_018865	22402	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0.040000	0.676617	
mm_75199.1	chr8	39118848	39119048	-	1	NA	NA	NA	113081	NM_030254	80286	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	0.000000	0.452736	
mm_160372.1	chr8	34807695	34807895	+	1	NA	NA	NA	185	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.100000	0.676617	
mm_54617.1	chr6	38355442	38355642	-	1	NA	NA	NA	-939	NM_028421	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.035000	0.477612	
mm_172250.1	chr6	69576454	69576654	-	1	NA	NA	NA	-249380	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.353234	-92(GTGTTTATAAGC,-,0.00)
mm_99422.1	chr11	102361089	102361289	+	1	NA	NA	NA	4092	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.020000	0.522388	-11(GTCTCTATATGC,-,0.00)
mm_156382.1	chrX	139672183	139672383	+	1	NA	NA	NA	-12713	NM_001081499	245638	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	0.010000	0.313433	
mm_167804.1	chr9	123928199	123928399	+	1	NA	NA	NA	40393	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.025000	0.467662	
mm_21290.1	chr2	156991743	156991943	-	1	NA	NA	NA	268	NM_013865	29812	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0.130000	0.726368	
mm_155524.1	chrX	74260792	74260992	+	1	NA	NA	NA	6205	NM_007927	13726	Mm.18892	NM_007927	ENSMUSG00000001964	Emd	AW550900|Sta	emerin	protein-coding	0.050000	0.572139	
mm_92771.1	chr10	81167632	81167832	-	1	NA	NA	NA	-12	NM_021501	59004	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0.100000	0.691542	
mm_964.1	chr1	58113075	58113275	+	1	NA	NA	NA	39	NM_023617	71724	Mm.20108	NM_023617	ENSMUSG00000064294	Aox3	1200011D03Rik|AI326299|Aoh1|Aoh2	aldehyde oxidase 3	protein-coding	0.015000	0.517413	
mm_140008.1	chr17	73142602	73142802	+	1	NA	NA	NA	34717	NM_001177967	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.005000	0.437811	
mm_159555.1	chr4	106757156	106757356	-	1	NA	NA	NA	23341	NM_146149	230579	Mm.222956	NM_146149	ENSMUSG00000034871	Fam151a	2010309H15Rik	family with sequence simliarity 151, member A	protein-coding	0.015000	0.467662	-79(CCTCTTAGGCCC,+,0.00),0(CCTTTTCTAGCT,+,0.00)
mm_53896.1	chr6	3399358	3399558	-	1	NA	NA	NA	113	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.010000	0.437811	
mm_102170.1	chr11	53891588	53891788	-	1	NA	NA	NA	15	NM_011396	20520	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0.135000	0.771144	
mm_52607.1	chr6	117173566	117173766	+	1	NA	NA	NA	5131	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.030000	0.562189	
mm_57164.1	chr6	122801546	122801746	-	1	NA	NA	NA	-18538	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.140000	0.756219	
mm_137829.1	chr17	30678471	30678671	+	1	NA	NA	NA	51635	NM_013811	13417	Mm.426017	NM_013811	ENSMUSG00000033826	Dnah8	ATPase|Dnahc8|Hst6.7b|P1-Loop	dynein, axonemal, heavy chain 8	protein-coding	0.020000	0.437811	-7(TTTTTTATGGTG,+,0.00)
mm_47141.1	chr5	120557710	120557910	-	1	NA	NA	NA	30803	NM_145853	252972	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.050000	0.606965	
mm_155311.1	chrX	61709384	61709584	+	1	NA	NA	NA	-132	NM_001018087	434784	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Sirh7	leucine zipper, down-regulated in cancer 1	protein-coding	0.050000	0.656716	
mm_110415.1	chr12	46720740	46720940	-	1	NA	NA	NA	97935	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.020000	0.422886	
mm_166441.1	chr5	137263498	137263698	-	1	NA	NA	NA	-24656	NM_009599	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.030000	0.497512	
mm_161839.1	chr17	86168096	86168296	+	1	NA	NA	NA	411	NM_011104	18754	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0.125000	0.701493	
mm_33940.1	chr4	136945587	136945787	+	1	NA	NA	NA	11129	NM_007939	13842	Mm.1390	NM_007939	ENSMUSG00000028661	Epha8	AW047546|Eek|Hek3|mKIAA1459	Eph receptor A8	protein-coding	0.060000	0.636816	
mm_170717.1	chr2	14627239	14627439	-	1	NA	NA	NA	23033	NM_023116	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.055000	0.477612	
mm_86033.1	chr9	113708089	113708289	-	1	NA	NA	NA	70	NM_001164678	18571	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0.170000	0.776119	
mm_56858.1	chr6	118197265	118197465	-	1	NA	NA	NA	379	NM_009050	19713	Mm.57199	NM_009050	ENSMUSG00000030110	Ret	PTC|RET51|RET9|c-Ret	ret proto-oncogene	protein-coding	0.075000	0.706468	
mm_89266.1	chr10	87859974	87860174	+	1	NA	NA	NA	1022	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.010000	0.417910	
mm_145132.1	chr18	44811575	44811775	+	1	NA	NA	NA	507	NM_001085373	328949	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0.010000	0.492537	
mm_33026.1	chr4	122008056	122008256	+	1	NA	NA	NA	-386031	NM_001099309	666927	Mm.465133	NM_001099309	ENSMUSG00000078575	Gm12887	OTTMUSG00000008910	predicted gene 12887	protein-coding	0.045000	0.542289	
mm_14212.1	chr2	127277585	127277785	+	1	NA	NA	NA	7456	NM_139308	99138	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0.005000	0.363184	-89(GCTTATAAATAC,+,0.00)
mm_150357.1	chr19	34649011	34649211	+	1	NA	NA	NA	8222	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.000000	0.432836	
mm_33029.1	chr4	122689156	122689356	+	1	NA	NA	NA	-3	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	0.000000	0.373134	
mm_47850.1	chr5	134520218	134520418	-	1	NA	NA	NA	32116	NM_001039162	269713	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.015000	0.427861	
mm_53625.1	chr6	140490935	140491135	+	1	NA	NA	NA	66936	NM_144920	109135	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.030000	0.532338	
mm_74640.1	chr8	13254061	13254261	-	1	NA	NA	NA	1	NM_172750	234072	Mm.132785	NM_172750	ENSMUSG00000031448	Adprhl1	Arh2|D330008N11Rik	ADP-ribosylhydrolase like 1	protein-coding	0.020000	0.567164	
mm_75163.1	chr8	36586637	36586837	-	1	NA	NA	NA	27206	NM_015802	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.030000	0.507463	0(GCTTAAATACTC,+,0.00)
mm_99280.1	chr11	101279073	101279273	+	1	NA	NA	NA	-30	NM_026562	68107	Mm.262369	NM_026562	ENSMUSG00000078653	Cntd1	1700051C09Rik|4921513J16Rik|5430417M23Rik|Cntd	cyclin N-terminal domain containing 1	protein-coding	0.040000	0.477612	
mm_92307.1	chr10	75152765	75152965	-	1	NA	NA	NA	-59208	NM_153406	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.005000	0.542289	
mm_10847.1	chr2	24976029	24976229	+	1	NA	NA	NA	96	NM_146251	241274	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0.025000	0.507463	
mm_109568.1	chr12	112106599	112106799	+	1	NA	NA	NA	16	NM_001081169	104816	Mm.77133	NM_001081169	ENSMUSG00000037686	Aspg	A530050D06Rik|AI429460|Gm690	asparaginase	protein-coding	0.015000	0.557214	-74(CCCTTTTTGAGG,-,0.00),-13(CCTTTACAAGAG,+,0.00)
mm_142042.1	chr17	35380167	35380367	-	1	NA	NA	NA	650	NM_001143689	15015	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	0.110000	0.706468	
mm_86403.1	chr9	123986551	123986751	-	1	NA	NA	NA	-8243	NM_007718	12770	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0.010000	0.442786	
mm_132338.1	chr16	33829594	33829794	+	1	NA	NA	NA	29	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.115000	0.711443	
mm_3515.1	chr1	150107331	150107531	+	1	NA	NA	NA	7400	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.000000	0.278607	
mm_19815.1	chr2	110363023	110363223	-	1	NA	NA	NA	-130	NM_026271	67606	Mm.291809	NM_026271	ENSMUSG00000074971	Fibin	1110018M03Rik	fin bud initiation factor homolog (zebrafish)	protein-coding	0.035000	0.577114	
mm_167834.1	chr9	124424319	124424519	-	1	NA	NA	NA	632	NR_015516	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.110000	0.562189	
mm_120392.1	chr14	64590631	64590831	+	1	NA	NA	NA	74	NR_029813	387233		NR_029813	ENSMUSG00000065597	Mir124a-1	Mirn124a|Mirn124a-1	microRNA 124a-1	ncRNA	0.050000	0.577114	
mm_72679.1	chr8	84946900	84947100	+	1	NA	NA	NA	9	NM_144929	234542	Mm.461701	NM_144929	ENSMUSG00000048617	Rtbdn	A330096I21Rik|BC022744|Rtbnd	retbindin	protein-coding	0.020000	0.522388	
mm_39997.1	chr5	32611156	32611356	+	1	NA	NA	NA	85	NM_009535	22612	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	0.145000	0.776119	
mm_153340.1	chr19	38372413	38372613	-	1	NA	NA	NA	-23467	NM_175507	240660	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	0.020000	0.467662	
mm_1013.1	chr1	58728575	58728775	+	1	NA	NA	NA	-1877	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.015000	0.517413	
mm_15266.1	chr2	155095929	155096129	+	1	NA	NA	NA	4050	NR_040634	100504268	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	0.015000	0.452736	
mm_73511.1	chr8	107368466	107368666	+	1	NA	NA	NA	34639	NM_008706	18104	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	0.000000	0.412935	
mm_164202.1	chr15	80193021	80193221	+	1	NA	NA	NA	19400	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.010000	0.572139	
mm_160065.1	chr7	5067728	5067928	+	1	NA	NA	NA	5685	NM_001205231	22185	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.010000	0.487562	
mm_31140.1	chr4	43382016	43382216	+	1	NA	NA	NA	134	NM_001037709	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.155000	0.771144	
mm_128923.1	chr15	73830899	73831099	-	1	NA	NA	NA	8672	NM_001033365	268816	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding	0.010000	0.562189	
mm_18639.1	chr2	69414414	69414614	-	1	NA	NA	NA	34052	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.010000	0.457711	
mm_51028.1	chr6	65432784	65432984	+	1	NA	NA	NA	51590	NM_175524	243407	Mm.389758	NM_175524	ENSMUSG00000029917	C130060K24Rik	-	RIKEN cDNA C130060K24 gene	protein-coding	0.010000	0.378109	
mm_118866.1	chr14	25854249	25854449	+	1	NA	NA	NA	12194	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.025000	0.502488	
mm_13570.1	chr2	112283093	112283293	+	1	NA	NA	NA	-1495	NM_133648	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.000000	0.368159	
mm_84114.1	chr9	58370368	58370568	-	1	NA	NA	NA	-36	NR_040727	73529	Mm.490924	NR_040727	ENSMUSG00000100487	1700072B07Rik	-	RIKEN cDNA 1700072B07 gene	ncRNA	0.000000	0.477612	54(TCTCTTAAAAGG,-,0.00)
mm_147846.1	chr18	63545101	63545301	-	1	NA	NA	NA	147158	NM_016792	53382	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.030000	0.402985	
mm_97068.1	chr11	72961071	72961271	+	1	NA	NA	NA	2	NM_001163337	53313	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0.115000	0.776119	
mm_136124.1	chr16	85900586	85900786	-	1	NA	NA	NA	439	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0.065000	0.567164	
mm_34691.1	chr4	152008842	152009042	+	1	NA	NA	NA	51	NM_001033352	242785	Mm.22306	NM_001033352	ENSMUSG00000073700	Klhl21	1810045K06Rik|D330008A20|mKIAA0469	kelch-like 21	protein-coding	0.125000	0.701493	-59(GTATTTATAGAG,+,0.00)
mm_99339.1	chr11	101468244	101468444	+	1	NA	NA	NA	6	NM_009708	11858	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn	Rho family GTPase 2	protein-coding	0.105000	0.736318	
mm_96207.1	chr11	62248968	62249168	+	1	NA	NA	NA	84	NM_007413	11541	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0.095000	0.701493	
mm_11418.1	chr2	31688258	31688458	+	1	NA	NA	NA	-179	NM_001283047	11350	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.070000	0.582090	18(ACCTTTAAAAGG,-,0.00),19(CCTTTAAAAGGT,+,0.00),20(CTTTAAAAGGTC,+,0.00)
mm_42900.1	chr5	122489143	122489343	+	1	NA	NA	NA	12982	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.015000	0.333333	
mm_42454.1	chr5	115435151	115435351	+	1	NA	NA	NA	5566	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.015000	0.636816	
mm_113067.1	chr13	23751013	23751213	+	1	NA	NA	NA	25	NM_175660	319172	Mm.423402	NM_175660	ENSMUSG00000061615	Hist1h2ab	H2A.1|H2a-53	histone cluster 1, H2ab	protein-coding	0.040000	0.492537	
mm_21314.1	chr2	157098771	157098971	-	1	NA	NA	NA	11816	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.020000	0.462687	-26(TCCTTTATAAGA,-,0.00)
mm_128492.1	chr15	51865361	51865561	-	1	NA	NA	NA	0	NM_080635	68135	Mm.289800	NM_080635	ENSMUSG00000022312	Eif3h	1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3	eukaryotic translation initiation factor 3, subunit H	protein-coding	0.095000	0.656716	
mm_33328.1	chr4	129106712	129106912	+	1	NA	NA	NA	1264	NM_001290706	66260	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.015000	0.547264	
mm_83586.1	chr9	48340785	48340985	-	1	NA	NA	NA	13	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.010000	0.547264	68(CTCTCTAAAAGC,-,0.00)
mm_35433.1	chr4	36856404	36856604	-	1	NA	NA	NA	95240	NM_001165999	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.000000	0.338308	
mm_164624.1	chr17	31277280	31277480	-	1	NA	NA	NA	-24	NM_025290	22092	Mm.12743	NM_025290	ENSMUSG00000024033	Rsph1	MCA|Tsga2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding	0.075000	0.606965	
mm_88949.1	chr10	81363932	81364132	+	1	NA	NA	NA	1788	NM_001014836	432479	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.080000	0.676617	
mm_102362.1	chr11	58330239	58330439	-	1	NA	NA	NA	0	NM_001256520	319475	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	0.070000	0.482587	
mm_142768.1	chr17	49529014	49529214	-	1	NA	NA	NA	35223	NM_001008231	76441	Mm.211275	NM_001008231	ENSMUSG00000040260	Daam2	2310016D11Rik|AI843643|AW557870	dishevelled associated activator of morphogenesis 2	protein-coding	0.000000	0.452736	-53(GTCTCTTTAAGA,-,0.00),-50(TCTTTAAGAGAG,+,0.00)
mm_112028.1	chr12	111485717	111485917	-	1	NA	NA	NA	6	NM_001033248	212539	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0.115000	0.761194	
mm_30187.1	chr3	144691356	144691556	-	1	NA	NA	NA	28879	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.015000	0.383085	
mm_62619.1	chr7	107370621	107370821	+	1	NA	NA	NA	-69	NM_021889	60510	Mm.302793	NM_021889	ENSMUSG00000062542	Syt9	-	synaptotagmin IX	protein-coding	0.180000	0.825871	
mm_39015.1	chr4	152128778	152128978	-	1	NA	NA	NA	47	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.015000	0.636816	
mm_171148.1	chr3	155962473	155962673	-	1	NA	NA	NA	-13781	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA	0.005000	0.497512	
mm_69267.1	chr7	127917615	127917815	-	1	NA	NA	NA	5198	NM_026370	67773	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|Myst1	K(lysine) acetyltransferase 8	protein-coding	0.010000	0.482587	
mm_122393.1	chr14	40966789	40966989	-	1	NA	NA	NA	7	NM_145928	52588	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.150000	0.756219	
mm_163768.1	chr13	120017926	120018126	+	1	NA	NA	NA	34178	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.000000	0.442786	
mm_57378.1	chr6	124813003	124813203	-	1	NA	NA	NA	1193	NM_009415	21991	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.010000	0.522388	
mm_15340.1	chr2	155989219	155989419	+	1	NA	NA	NA	15108	NM_001145351	320095	Mm.442175	NM_001145351	ENSMUSG00000074646	6430550D23Rik	-	RIKEN cDNA 6430550D23 gene	protein-coding	0.015000	0.582090	
mm_156171.1	chrX	130186689	130186889	+	1	NA	NA	NA	437047	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.005000	0.373134	72(TCTTTAAAACAC,+,0.00)
mm_50097.1	chr6	41532943	41533143	+	1	NA	NA	NA	11267	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.015000	0.507463	
mm_100491.1	chr11	120444217	120444417	+	1	NA	NA	NA	1686	NM_145363	208634	Mm.209875	NM_145363	ENSMUSG00000039691	Tspan10	Ocsp	tetraspanin 10	protein-coding	0.015000	0.592040	
mm_89222.1	chr10	87057955	87058155	+	1	NA	NA	NA	9	NM_029685	76640	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding	0.045000	0.621891	
mm_170069.1	chr17	32113315	32113515	+	1	NA	NA	NA	-21992	NR_027316	435518	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	ENSMUSG00000002791|Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0.030000	0.547264	
mm_41310.1	chr5	90468557	90468757	+	1	NA	NA	NA	7787	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.005000	0.497512	
mm_9476.1	chr1	173345707	173345907	-	1	NA	NA	NA	-12304	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	0.045000	0.567164	
mm_129927.1	chr15	84446951	84447151	-	1	NA	NA	NA	46	NM_001163145	72301	Mm.275387	NM_001163145	ENSMUSG00000062760	1810041L15Rik	Kiaa1644	RIKEN cDNA 1810041L15 gene	protein-coding	0.030000	0.631841	
mm_91682.1	chr10	43829108	43829308	-	1	NA	NA	NA	3301	NR_131055	71018	Mm.410796	NR_131055	ENSMUSG00000111342	4933404K13Rik	-	RIKEN cDNA 4933404K13 gene	ncRNA	0.010000	0.457711	
mm_1910.1	chr1	85906324	85906524	+	1	NA	NA	NA	11914	NM_022417	64294	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.030000	0.552239	
mm_6960.1	chr1	86110671	86110871	-	1	NA	NA	NA	1199	NM_008311	15559	Mm.439747	NM_008311	ENSMUSG00000026228	Htr2b	5-HT2B|AJ012488|AV377389	5-hydroxytryptamine (serotonin) receptor 2B	protein-coding	0.015000	0.467662	
mm_120722.1	chr14	73138644	73138844	+	1	NA	NA	NA	-3766	NM_001170694	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.010000	0.497512	
mm_54967.1	chr6	48732576	48732776	-	1	NA	NA	NA	-6371	NM_175860	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.010000	0.447761	
mm_24849.1	chr3	95735823	95736023	+	1	NA	NA	NA	-950	NR_105981	102466787		NR_105981	ENSMUSG00000098737	Mir7014	Gm27837|mmu-mir-7014	microRNA 7014	ncRNA	0.065000	0.621891	
mm_78798.1	chr9	44046810	44047010	+	1	NA	NA	NA	3526	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.025000	0.502488	
mm_97144.1	chr11	75415548	75415748	+	1	NA	NA	NA	6975	NM_011340	20317	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.015000	0.537313	
mm_151752.1	chr19	5094511	5094711	-	1	NA	NA	NA	3910	NM_001302333	12794	Mm.299737	NM_009920	ENSMUSG00000024873	Cnih2	CNIH-2|Cnil	cornichon family AMPA receptor auxiliary protein 2	protein-coding	0.040000	0.606965	
mm_74981.1	chr8	27141613	27141813	-	1	NA	NA	NA	-1197	NR_045840	71082	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.025000	0.542289	
mm_109594.1	chr12	112644748	112644948	+	1	NA	NA	NA	20	NM_013929	30954	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.170000	0.746269	
mm_107892.1	chr12	70460435	70460635	+	1	NA	NA	NA	7381	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0.005000	0.348259	
mm_95620.1	chr11	53548646	53548846	+	1	NA	NA	NA	-18623	NM_008443	16568	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	0.015000	0.432836	-20(TGCTATTAAAGG,-,0.00)
mm_32017.1	chr4	94845650	94845850	+	1	NA	NA	NA	83093	NM_027089	67753	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	0.015000	0.333333	
mm_61010.1	chr7	49364793	49364993	+	1	NA	NA	NA	118704	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.025000	0.467662	
mm_83944.1	chr9	56851928	56852128	-	1	NA	NA	NA	-65	NM_198673	382075	Mm.335177	NM_198673	ENSMUSG00000045620	Odf3l1	BC049697|Gm1116	outer dense fiber of sperm tails 3-like 1	protein-coding	0.030000	0.567164	
mm_64327.1	chr7	142201264	142201464	+	1	NA	NA	NA	0	NM_023860	77215	Mm.462993	NM_023860	ENSMUSG00000046248	Krtap5-3	A030007E19Rik	keratin associated protein 5-3	protein-coding	0.005000	0.532338	
mm_142219.1	chr17	37185372	37185572	-	1	NA	NA	NA	-8420	NM_023137	24108	Mm.140210	NM_023137	ENSMUSG00000035186	Ubd	FAT10	ubiquitin D	protein-coding	0.010000	0.432836	
mm_76713.1	chr8	94667033	94667233	-	1	NA	NA	NA	42	NM_024269	107566	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0.060000	0.621891	
mm_127734.1	chr15	103296642	103296842	+	1	NA	NA	NA	11617	NR_029766	724064		NR_029766	ENSMUSG00000065560	Mir148b	Mirn148b|mir-148b	microRNA 148b	ncRNA	0.020000	0.572139	
mm_5170.1	chr1	10230673	10230873	-	1	NA	NA	NA	1897	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.000000	0.363184	
mm_60479.1	chr7	44478267	44478467	+	1	NA	NA	NA	-6150	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.452736	
mm_8984.1	chr1	165685423	165685623	-	1	NA	NA	NA	22571	NM_178593	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.010000	0.368159	
mm_139808.1	chr17	66364507	66364707	+	1	NA	NA	NA	85143	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.095000	0.626866	
mm_74850.1	chr8	24595553	24595753	-	1	NA	NA	NA	13	NM_001293690	15930	Mm.392	NM_008324	ENSMUSG00000031551	Ido1	Ido|Indo	indoleamine 2,3-dioxygenase 1	protein-coding	0.040000	0.572139	
mm_151165.1	chr19	53195246	53195446	+	1	NA	NA	NA	51349	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.010000	0.417910	
mm_141506.1	chr17	31636542	31636742	-	1	NA	NA	NA	563	NM_144855	12411	Mm.206417	NM_144855	ENSMUSG00000024039	Cbs	AI047524|AI303044|HIP4	cystathionine beta-synthase	protein-coding	0.065000	0.587065	
mm_169888.1	chr16	46663641	46663841	-	1	NA	NA	NA	-166774	NM_021497	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.015000	0.422886	
mm_50534.1	chr6	49045651	49045851	+	1	NA	NA	NA	9233	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.015000	0.333333	
mm_105024.1	chr11	100472642	100472842	-	1	NA	NA	NA	40	NM_172565	217194	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	0.115000	0.671642	
mm_60156.1	chr7	39517697	39517897	+	1	NA	NA	NA	31	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.090000	0.656716	-33(TCCCCTTTAAGG,-,0.00),-32(CCCCTTTAAGGC,-,0.00),-31(CCCTTTAAGGCT,+,0.00),-30(CCTTTAAGGCTG,+,0.00)
mm_32543.1	chr4	109316748	109316948	+	1	NA	NA	NA	-26208	NM_001159964	13858	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0.000000	0.412935	
mm_2914.1	chr1	132008283	132008483	+	1	NA	NA	NA	778	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.070000	0.582090	
mm_156550.1	chrX	151522268	151522468	+	1	NA	NA	NA	1696	NM_001113354	320595	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	0.050000	0.552239	
mm_6568.1	chr1	75190266	75190466	-	1	NA	NA	NA	1644	NM_001003917	245860	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	0.030000	0.572139	
mm_120678.1	chr14	70577724	70577924	+	1	NA	NA	NA	-23	NM_153136	213484	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	0.110000	0.731343	
mm_53867.1	chr6	149328753	149328953	+	1	NA	NA	NA	19439	NM_001289662	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.020000	0.412935	
mm_10003.1	chr1	191541263	191541463	-	1	NA	NA	NA	34181	NM_001305233	76843	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	0.030000	0.527363	
mm_64540.1	chr7	144238624	144238824	+	1	NA	NA	NA	-45661	NM_001081370	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.035000	0.447761	
mm_126372.1	chr15	80135139	80135339	+	1	NA	NA	NA	2085	NM_025609	66513	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	0.005000	0.368159	
mm_12039.1	chr2	58769668	58769868	+	1	NA	NA	NA	14584	NM_029692	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.010000	0.432836	
mm_29916.1	chr3	131489669	131489869	-	1	NA	NA	NA	-74999	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.040000	0.567164	
mm_166855.1	chr7	19989358	19989558	+	1	NA	NA	NA	-18565	NM_194058	243874	Mm.277114	NM_194058	ENSMUSG00000060508	Nlrp9b	Nalp-delta|Nalp9b|Nlrp9	NLR family, pyrin domain containing 9B	protein-coding	0.000000	0.427861	
mm_69459.1	chr7	133123294	133123494	-	1	NA	NA	NA	89	NM_009980	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.050000	0.631841	
mm_58654.1	chr7	6389569	6389769	+	1	NA	NA	NA	6351	NM_175247	22690	Mm.127014	NM_175247	ENSMUSG00000062861	Zfp28	2810438M17Rik|Zfp-28|mkr-5	zinc finger protein 28	protein-coding	0.020000	0.502488	
mm_113265.1	chr13	28951431	28951631	+	1	NA	NA	NA	2151	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.040000	0.402985	
mm_78422.1	chr9	31071812	31072012	+	1	NA	NA	NA	41268	NM_172765	235132	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.015000	0.318408	
mm_38243.1	chr4	136592928	136593128	-	1	NA	NA	NA	9695	NM_133872	99982	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	0.015000	0.447761	
mm_114542.1	chr13	73770142	73770342	+	1	NA	NA	NA	6545	NM_011390	20499	Mm.275800	NM_011390	ENSMUSG00000017756	Slc12a7	AA408796|D13Ertd261e|Kcc4	solute carrier family 12, member 7	protein-coding	0.005000	0.512438	
mm_122257.1	chr14	34201513	34201713	-	1	NA	NA	NA	20	NM_183209	432839	Mm.294643	NM_183209	ENSMUSG00000071531	Gprin2	C130040D06Rik|C230073P13|Gm286|mKIAA0514	G protein regulated inducer of neurite outgrowth 2	protein-coding	0.085000	0.721393	
mm_93630.1	chr10	117280651	117280851	-	1	NA	NA	NA	1521	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.025000	0.432836	
mm_144403.1	chr18	20782502	20782702	+	1	NA	NA	NA	-36198	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.020000	0.422886	
mm_31363.1	chr4	47285863	47286063	+	1	NA	NA	NA	-67259	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.020000	0.552239	
mm_9920.1	chr1	189402655	189402855	-	1	NA	NA	NA	-482	NM_001281848	16526	Mm.33304	NM_010607	ENSMUSG00000037624	Kcnk2	A430027H14Rik|AI848635|TREK-1	potassium channel, subfamily K, member 2	protein-coding	0.015000	0.432836	-32(GTTTTAATAGGT,+,0.00),43(GAGCTTAAAAAC,-,0.00)
mm_82082.1	chr9	123021245	123021445	+	1	NA	NA	NA	19	NM_001164823	66079	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	0.135000	0.741294	
mm_142636.1	chr17	47421758	47421958	-	1	NA	NA	NA	22	NM_001347584	75462	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.010000	0.507463	
mm_26766.1	chr3	8863186	8863386	-	1	NA	NA	NA	60571	NM_025434	66230	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.020000	0.562189	
mm_21925.1	chr2	166996053	166996253	-	1	NA	NA	NA	146	NM_011490	20853	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen (RNA binding protein) homolog 1 (Drosophila)	protein-coding	0.125000	0.696517	
mm_36928.1	chr4	108300976	108301176	-	1	NA	NA	NA	14	NM_001033634	414872	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	0.110000	0.751244	
mm_39499.1	chr5	21186212	21186412	+	1	NA	NA	NA	45	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.065000	0.671642	
mm_41867.1	chr5	104459460	104459660	+	1	NA	NA	NA	103	NM_008861	18764	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	0.115000	0.731343	-91(CCTTTTCGACGC,+,0.00)
mm_117533.1	chr13	83571900	83572100	-	1	NA	NA	NA	-1607	NM_001347577	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.010000	0.477612	
mm_158713.1	chrX	162565512	162565712	-	1	NA	NA	NA	78046	NM_001290633	194590	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	0.005000	0.358209	
mm_6973.1	chr1	86347916	86348116	-	1	NA	NA	NA	3269	NR_028478	100303740	Mm.154378	NR_028478	ENSMUSG00000064837	Snora75	MBI-55	small nucleolar RNA, H/ACA box 75	snoRNA	0.010000	0.452736	81(TTGCATTAAAGG,-,0.00),83(GCATTAAAGGCC,+,0.00)
mm_132228.1	chr16	32661134	32661334	+	1	NA	NA	NA	6963	NR_033493	675921	Mm.404316	NR_033493	ENSMUSG00000075265	Tnk2os	ENSMUSG00000075265|Gm10818	tyrosine kinase, non-receptor 2, opposite strand	ncRNA	0.025000	0.626866	
mm_17213.1	chr2	25493337	25493537	-	1	NA	NA	NA	474	NM_029958	77701	Mm.99123	NM_029958	ENSMUSG00000026943	Lcn12	9230102M18Rik	lipocalin 12	protein-coding	0.005000	0.587065	
mm_8867.1	chr1	162834205	162834405	-	1	NA	NA	NA	-21756	NM_144878	226564	Mm.155164	NM_144878	ENSMUSG00000026692	Fmo4	D1Ertd532e	flavin containing monooxygenase 4	protein-coding	0.015000	0.348259	
mm_80620.1	chr9	88549763	88549963	+	1	NA	NA	NA	1843	NM_001163061	71640	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik	zinc finger protein 949	protein-coding	0.010000	0.447761	
mm_86164.1	chr9	118701765	118701965	-	1	NA	NA	NA	-9827	NM_001113514	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.010000	0.512438	
mm_10229.1	chr2	6340926	6341126	+	1	NA	NA	NA	-11710	NM_181399	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.000000	0.308458	
mm_43524.1	chr5	137152339	137152539	+	1	NA	NA	NA	-36232	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.472637	
mm_168975.1	chr12	88066546	88066746	+	1	NA	NA	NA	112166	NM_001270792	100039087	Mm.458830	NM_001270792	ENSMUSG00000096276	Gm2042	-	predicted gene 2042	protein-coding	0.015000	0.467662	
mm_158915.1	chr1	52952971	52953171	-	1	NA	NA	NA	-231	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.025000	0.592040	
mm_32291.1	chr4	103114636	103114836	+	1	NA	NA	NA	346	NM_001286222	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.150000	0.726368	
mm_24845.1	chr3	95662090	95662290	+	1	NA	NA	NA	3469	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.010000	0.467662	
mm_116691.1	chr13	49309137	49309337	-	1	NA	NA	NA	-29	NM_015759	30938	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.020000	0.477612	
mm_148977.1	chr19	7561637	7561837	+	1	NA	NA	NA	4278	NM_139269	225845	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.005000	0.457711	
mm_161999.1	chr19	39886629	39886829	-	1	NA	NA	NA	40	NM_001104525	100043108	Mm.482331	NM_001104525	ENSMUSG00000092008	Cyp2c69	AI098658	cytochrome P450, family 2, subfamily c, polypeptide 69	protein-coding	0.010000	0.417910	
mm_17598.1	chr2	30803549	30803749	-	1	NA	NA	NA	15	NR_028486	73598	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.005000	0.572139	
mm_164224.1	chr15	85580048	85580248	+	1	NA	NA	NA	581	NM_001163633	22422	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	0.015000	0.537313	
mm_132570.1	chr16	38131956	38132156	+	1	NA	NA	NA	-42796	NR_033221	414072	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.040000	0.547264	
mm_26162.1	chr3	138277653	138277853	+	1	NA	NA	NA	108	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.015000	0.482587	
mm_32133.1	chr4	99194064	99194264	+	1	NA	NA	NA	17	NM_001145967	242557	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.150000	0.726368	
mm_42426.1	chr5	115332657	115332857	+	1	NA	NA	NA	5580	NR_036616	108014	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0.025000	0.427861	
mm_92620.1	chr10	80164989	80165189	-	1	NA	NA	NA	-2752	NM_007705	12696	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.065000	0.616915	
mm_102189.1	chr11	54249260	54249460	-	1	NA	NA	NA	539	NM_009969	12981	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	0.020000	0.517413	
mm_132260.1	chr16	32755661	32755861	+	1	NA	NA	NA	19875	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.005000	0.462687	
mm_158133.1	chrX	103186381	103186581	-	1	NA	NA	NA	183	NM_008671	17954	Mm.388694	NM_008671	ENSMUSG00000082229	Nap1l2	Bpx	nucleosome assembly protein 1-like 2	protein-coding	0.045000	0.582090	
mm_55838.1	chr6	83155743	83155943	-	1	NA	NA	NA	536	NM_023790	75659	Mm.130665	NM_023790	ENSMUSG00000030032	Wdr54	1700030E05Rik	WD repeat domain 54	protein-coding	0.055000	0.572139	
mm_38639.1	chr4	143161233	143161433	-	1	NA	NA	NA	-25171	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	0.010000	0.368159	74(GGCTATAAATAA,-,0.00)
mm_80062.1	chr9	69403739	69403939	+	1	NA	NA	NA	5841	NM_145618	93697	Mm.35911	NM_145618	ENSMUSG00000032235	Ice2	B230343B06Rik|Narg2	interactor of little elongation complex ELL subunit 2	protein-coding	0.005000	0.248756	
mm_61712.1	chr7	81296451	81296651	+	1	NA	NA	NA	48683	NM_009092	20068	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.005000	0.368159	47(GTTTTTAAATGC,+,0.00)
mm_112277.1	chr12	114322752	114322952	-	1	NA	NA	NA	146614	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.005000	0.442786	
mm_114786.1	chr13	89209612	89209812	+	1	NA	NA	NA	-330924	NM_013500	12950	Mm.266790	NM_013500	ENSMUSG00000021613	Hapln1	BB099155|CLP|Crtl1|Crtl1l|LP|LP-1	hyaluronan and proteoglycan link protein 1	protein-coding	0.000000	0.283582	
mm_16295.1	chr2	174285179	174285379	+	1	NA	NA	NA	959	NM_022000	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.090000	0.696517	
mm_11597.1	chr2	33640961	33641161	+	1	NA	NA	NA	-132	NR_046275	100504399	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	0.120000	0.771144	
mm_32416.1	chr4	107048063	107048263	+	1	NA	NA	NA	18703	NM_025500	56280	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0.010000	0.477612	
mm_158382.1	chrX	136051113	136051313	-	1	NA	NA	NA	17023	NM_009749	12069	Mm.94160	NM_009749	ENSMUSG00000042750	Bex2	AL024066|Bex1	brain expressed X-linked 2	protein-coding	0.005000	0.417910	
mm_57674.1	chr6	128494471	128494671	-	1	NA	NA	NA	32149	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.010000	0.333333	
mm_171898.1	chr5	41832534	41832734	-	1	NA	NA	NA	11681	NM_001310601	665775	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0.010000	0.492537	
mm_101328.1	chr11	22972775	22972975	-	1	NA	NA	NA	870	NM_011663	22183	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.080000	0.562189	
mm_74012.1	chr8	121421113	121421313	+	1	NA	NA	NA	120741	NM_029597	76405	Mm.165697	NM_029597	ENSMUSG00000031809	1700018B08Rik	1700084O22Rik	RIKEN cDNA 1700018B08 gene	protein-coding	0.025000	0.507463	
mm_81585.1	chr9	110422542	110422742	+	1	NA	NA	NA	2834	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.005000	0.477612	
mm_69149.1	chr7	127121917	127122117	-	1	NA	NA	NA	12	NM_133686	67375	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0.020000	0.597015	
mm_4610.1	chr1	178529024	178529224	+	1	NA	NA	NA	-1	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.100000	0.626866	
mm_124385.1	chr14	108913853	108914053	-	1	NA	NA	NA	286	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.055000	0.567164	
mm_36125.1	chr4	58981784	58981984	-	1	NA	NA	NA	5194	NM_025968	67103	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	0.020000	0.457711	
mm_31282.1	chr4	45848797	45848997	+	1	NA	NA	NA	-50	NM_028788	74152	Mm.63645	NM_028788	ENSMUSG00000028327	Stra6l	1300002K09Rik|Rbpr2	STRA6-like	protein-coding	0.010000	0.517413	
mm_113868.1	chr13	48550727	48550927	+	1	NA	NA	NA	-12555	NR_029725	387244		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.010000	0.432836	-97(CTCTCTATATGG,-,0.00)
mm_152165.1	chr19	7295331	7295531	-	1	NA	NA	NA	16	NM_001080390	13728	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.020000	0.562189	
mm_43698.1	chr5	139211841	139212041	+	1	NA	NA	NA	-3217	NM_001256118	77053	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0.020000	0.542289	
mm_117013.1	chr13	58113538	58113738	-	1	NA	NA	NA	-11210	NM_001195075	100503085	Mm.379256	NM_001195075	ENSMUSG00000014164	Klhl3	7530408C15Rik|AI430941|EG627648	kelch-like 3	protein-coding	0.015000	0.587065	
mm_82046.1	chr9	122351667	122351867	+	1	NA	NA	NA	151	NM_026179	67469	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0.145000	0.746269	-69(CGGTCTTAAGGG,-,0.00)
mm_106298.1	chr11	118222673	118222873	-	1	NA	NA	NA	-10031	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.030000	0.547264	
mm_132891.1	chr16	48842628	48842828	+	1	NA	NA	NA	176	NM_020509	57262	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0.005000	0.482587	
mm_143303.1	chr17	65985918	65986118	-	1	NA	NA	NA	-34831	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.020000	0.437811	
mm_145946.1	chr18	67390612	67390812	+	1	NA	NA	NA	-19	NM_026473	67951	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	0.110000	0.716418	
mm_119753.1	chr14	54158362	54158562	+	1	NA	NA	NA	95467	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.025000	0.502488	
mm_162423.1	chr1	92048652	92048852	+	1	NA	NA	NA	131589	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.005000	0.452736	
mm_111060.1	chr12	80110363	80110563	-	1	NA	NA	NA	2550	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.030000	0.646766	
mm_136305.1	chr16	91618905	91619105	-	1	NA	NA	NA	-6	NM_138664	246738	Mm.101927	NM_138664	ENSMUSG00000039763	Dnajc28	BC020175|ORF28	DnaJ heat shock protein family (Hsp40) member C28	protein-coding	0.055000	0.572139	58(GGTTTTATAAGA,-,0.00)
mm_14775.1	chr2	145822050	145822250	+	1	NA	NA	NA	36034	NM_028724	74030	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.015000	0.487562	-62(CTCTTTTTAAAG,-,0.00),-61(TCTTTTTAAAGG,-,0.00),-60(CTTTTTAAAGGG,+,0.00),-60(CTTTTTAAAGGG,-,0.00)
mm_152772.1	chr19	21077777	21077977	-	1	NA	NA	NA	-26833	NR_126458	75354	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.005000	0.522388	
mm_146774.1	chr18	20059213	20059413	-	1	NA	NA	NA	241	NM_013505	13506	Mm.280547	NM_013505	ENSMUSG00000024331	Dsc2	AW228162	desmocollin 2	protein-coding	0.075000	0.656716	
mm_63282.1	chr7	126770903	126771103	+	1	NA	NA	NA	4589	NM_024228	68616	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	0.035000	0.572139	
mm_165692.1	chr3	93443329	93443529	+	1	NA	NA	NA	1099	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.035000	0.388060	
mm_39286.1	chr5	3994934	3995134	+	1	NA	NA	NA	66848	NM_194462	100986	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	0.005000	0.363184	
mm_103178.1	chr11	70459871	70460071	-	1	NA	NA	NA	13	NM_023158	66102	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.025000	0.552239	
mm_2815.1	chr1	130878234	130878434	+	1	NA	NA	NA	9077	NM_053095	93672	Mm.196691	NM_053095	ENSMUSG00000026420	Il24	FISP|Mda-7|Mda7|St16	interleukin 24	protein-coding	0.110000	0.706468	
mm_133161.1	chr16	70408355	70408555	+	1	NA	NA	NA	94506	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.010000	0.318408	
mm_138443.1	chr17	35128330	35128530	+	1	NA	NA	NA	2028	NM_033477	114585	Mm.42070	NM_033477	ENSMUSG00000043311	D17H6S53E	G4|NG34	DNA segment, Chr 17, human D6S53E	protein-coding	0.020000	0.442786	12(CTTTTTAAAAGC,+,0.00),12(CTTTTTAAAAGC,-,0.00)
mm_132342.1	chr16	33829833	33830033	+	1	NA	NA	NA	268	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.190000	0.815920	
mm_97347.1	chr11	77469757	77469957	+	1	NA	NA	NA	5944	NM_139130	216961	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.010000	0.512438	
mm_48124.1	chr5	137146662	137146862	-	1	NA	NA	NA	-30555	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.045000	0.532338	
mm_80380.1	chr9	75434249	75434449	+	1	NA	NA	NA	-7175	NM_001039522	235497	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0.015000	0.417910	4(GACTCTTTAGGG,-,0.00),58(TCTTTAAAACTG,+,0.00)
mm_51070.1	chr6	66537439	66537639	+	1	NA	NA	NA	2071	NM_019499	56150	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	0.010000	0.457711	
mm_108906.1	chr12	100205535	100205735	+	1	NA	NA	NA	5491	NM_001313934	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.030000	0.472637	
mm_81900.1	chr9	119937580	119937780	+	1	NA	NA	NA	74	NM_028735	74052	Mm.189573	NM_028735	ENSMUSG00000032514	Ttc21a	4921538N17Rik|AA387572|Thm2	tetratricopeptide repeat domain 21A	protein-coding	0.080000	0.651741	
mm_108945.1	chr12	102282992	102283192	+	1	NA	NA	NA	18	NM_177620	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.115000	0.741294	
mm_77169.1	chr8	111689456	111689656	-	1	NA	NA	NA	118	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.035000	0.631841	
mm_4825.1	chr1	185454970	185455170	+	1	NA	NA	NA	222	NM_001033286	226781	Mm.227117	NM_001033286	ENSMUSG00000026614	Slc30a10	E130106K10Rik|Gm212	solute carrier family 30, member 10	protein-coding	0.080000	0.696517	
mm_6033.1	chr1	59551025	59551225	-	1	NA	NA	NA	34861	NM_001013771	381260	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0.040000	0.542289	
mm_27913.1	chr3	79531601	79531801	-	1	NA	NA	NA	35978	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.005000	0.497512	
mm_170349.1	chr18	51002930	51003130	+	1	NA	NA	NA	-114868	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0.090000	0.552239	
mm_51219.1	chr6	71369604	71369804	+	1	NA	NA	NA	-3723	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.015000	0.522388	
mm_98785.1	chr11	96926053	96926253	+	1	NA	NA	NA	-3171	NM_146026	217138	Mm.342551	NM_146026	ENSMUSG00000047040	Prr15l	Atad4|BC022765|E230006A12Rik	proline rich 15-like	protein-coding	0.020000	0.472637	-74(ACTTTAATAGTG,+,0.00)
mm_43147.1	chr5	125475743	125475943	+	1	NA	NA	NA	-30	NM_030210	78894	Mm.431573	NM_030210	ENSMUSG00000029482	Aacs	2210408B16Rik|SUR5	acetoacetyl-CoA synthetase	protein-coding	0.120000	0.691542	
mm_164524.1	chr17	3557736	3557936	-	1	NA	NA	NA	12	NR_045302	68230	Mm.431352	NR_045302		1700102H20Rik	-	RIKEN cDNA 1700102H20 gene	ncRNA	0.070000	0.636816	
mm_94269.1	chr11	3531588	3531788	+	1	NA	NA	NA	7604	NM_013870	29856	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.015000	0.547264	
mm_74649.1	chr8	13389763	13389963	-	1	NA	NA	NA	6915	NM_009724	11945	Mm.154039	NM_009724	ENSMUSG00000031449	Atp4b	AV080843	ATPase, H+/K+ exchanging, beta polypeptide	protein-coding	0.010000	0.547264	
mm_143446.1	chr17	70874716	70874916	-	1	NA	NA	NA	-21284	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.010000	0.497512	
mm_160013.1	chr6	127015513	127015713	+	1	NA	NA	NA	71	NM_010204	14177	Mm.3403	NM_010204	ENSMUSG00000000183	Fgf6	Fgf-6|HSTF-2	fibroblast growth factor 6	protein-coding	0.050000	0.597015	
mm_130236.1	chr15	96474628	96474828	-	1	NA	NA	NA	-13885	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.040000	0.557214	
mm_172557.1	chr8	106212501	106212701	+	1	NA	NA	NA	1547	NM_145404	214572	Mm.251804	NM_145404	ENSMUSG00000060098	Prmt7	4933402B05Rik|BC006705	protein arginine N-methyltransferase 7	protein-coding	0.005000	0.527363	
mm_133457.1	chr16	89092000	89092200	+	1	NA	NA	NA	-28098	NM_001276278	68637	Mm.384089	NM_001276278	ENSMUSG00000068073	1110025L11Rik	-	RIKEN cDNA 1110025L11 gene	protein-coding	0.010000	0.482587	-35(GTGTATAAAAGG,-,0.00)
mm_74656.1	chr8	13501217	13501417	-	1	NA	NA	NA	-6782	NM_019521	14456	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0.010000	0.467662	
mm_170382.1	chr1	85649965	85650165	+	1	NA	NA	NA	77	NM_001313714	20684	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.015000	0.567164	
mm_119312.1	chr14	36316972	36317172	+	1	NA	NA	NA	222107	NM_175008	218921	Mm.212464	NM_175008	ENSMUSG00000096405	4930474N05Rik	-	RIKEN cDNA 4930474N05 gene	protein-coding	0.005000	0.328358	-31(CTATTTAAACCC,+,0.00),59(GCTTTTAGAGCA,+,0.00)
mm_155638.1	chrX	85202577	85202777	+	1	NA	NA	NA	-47000	NM_028046	71996	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	0.015000	0.313433	
mm_115596.1	chr13	11827524	11827724	-	1	NA	NA	NA	279321	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.015000	0.547264	
mm_159748.1	chr5	76273897	76274097	-	1	NA	NA	NA	29505	NM_001305222	12753	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0.020000	0.343284	
mm_149770.1	chr19	23061390	23061590	+	1	NA	NA	NA	-79736	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.015000	0.457711	
mm_71502.1	chr8	46806428	46806628	+	1	NA	NA	NA	66783	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.030000	0.462687	
mm_86437.1	chr10	3874564	3874764	+	1	NA	NA	NA	1997	NM_001033253	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.000000	0.303483	
mm_48291.1	chr5	138195449	138195649	-	1	NA	NA	NA	1235	NM_177878	330216	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	0.030000	0.467662	
mm_92901.1	chr10	83337307	83337507	-	1	NA	NA	NA	410	NM_177388	338365	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.140000	0.786070	
mm_58435.1	chr7	3297673	3297873	+	1	NA	NA	NA	4745	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.010000	0.462687	
mm_94457.1	chr11	6415708	6415908	+	1	NA	NA	NA	-62	NM_008907	268373	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	0.145000	0.701493	27(GGGTATAAAGGA,-,0.00)
mm_66266.1	chr7	35802888	35803088	-	1	NA	NA	NA	1	NM_177739	668501	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	0.105000	0.706468	
mm_23677.1	chr3	68584152	68584352	+	1	NA	NA	NA	11884	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.010000	0.537313	
mm_112812.1	chr13	20794238	20794438	+	1	NA	NA	NA	225	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.507463	
mm_72687.1	chr8	84968874	84969074	+	1	NA	NA	NA	-648	NM_001317385	21672	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0.015000	0.417910	
mm_110680.1	chr12	67059810	67060010	-	1	NA	NA	NA	162639	NM_001193266	320772	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	0.030000	0.402985	
mm_22685.1	chr3	16792699	16792899	+	1	NA	NA	NA	609616	NM_001145919	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.045000	0.477612	-33(TTCTATAAAAAC,-,0.00)
mm_161798.1	chr17	52602557	52602757	+	1	NA	NA	NA	-52	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.055000	0.646766	
mm_85375.1	chr9	103223526	103223726	-	1	NA	NA	NA	6660	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.010000	0.532338	
mm_82842.1	chr9	31168684	31168884	-	1	NA	NA	NA	-36985	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.025000	0.482587	-18(CCCCTTTAAAGG,-,0.00),-17(CCCTTTAAAGGA,+,0.00),-17(CCCTTTAAAGGA,-,0.00),-16(CCTTTAAAGGAG,+,0.00)
mm_53322.1	chr6	129205403	129205603	+	1	NA	NA	NA	24888	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.005000	0.442786	
mm_37765.1	chr4	129696730	129696930	-	1	NA	NA	NA	8	NM_199305	230770	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	0.115000	0.666667	-71(GCCCCTTTAAGA,-,0.00),-69(CCCTTTAAGAAG,-,0.00),-68(CCTTTAAGAAGC,+,0.00)
mm_81780.1	chr9	114688758	114688958	+	1	NA	NA	NA	27	NM_146229	235661	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	0.140000	0.706468	
mm_136890.1	chr17	13010782	13010982	+	1	NA	NA	NA	3043	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.025000	0.432836	
mm_84350.1	chr9	64340712	64340912	-	1	NA	NA	NA	-39	NM_001177784	213550	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	0.100000	0.681592	
mm_41710.1	chr5	101765237	101765437	+	1	NA	NA	NA	207	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.165000	0.810945	
mm_155865.1	chrX	101383671	101383871	+	1	NA	NA	NA	39	NM_001302497	14618	Mm.21198	NM_008124	ENSMUSG00000047797	Gjb1	Cnx32|Cx32|connexin-32	gap junction protein, beta 1	protein-coding	0.040000	0.577114	
mm_20687.1	chr2	132670291	132670491	-	1	NA	NA	NA	-19892	NM_028637	73747	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0.015000	0.437811	
mm_40774.1	chr5	67260633	67260833	+	1	NA	NA	NA	168	NM_030108	67878	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	0.100000	0.616915	-10(GGCCCTTTAAGG,-,0.00),-9(GCCCTTTAAGGC,-,0.00),-8(CCCTTTAAGGCC,+,0.00)
mm_50936.1	chr6	57702834	57703034	+	1	NA	NA	NA	479	NM_133737	71835	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.085000	0.676617	
mm_74105.1	chr8	122848351	122848551	+	1	NA	NA	NA	77	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.055000	0.646766	
mm_91192.1	chr10	21146308	21146508	-	1	NA	NA	NA	14576	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.005000	0.522388	
mm_60865.1	chr7	45916070	45916270	+	1	NA	NA	NA	4679	NM_001146346	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.045000	0.626866	
mm_76680.1	chr8	94012446	94012646	-	1	NA	NA	NA	94	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.175000	0.815920	
mm_11112.1	chr2	28193103	28193303	+	1	NA	NA	NA	110	NM_001038614	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.135000	0.781095	
mm_44674.1	chr5	29735837	29736037	-	1	NA	NA	NA	-1	NR_028426	332993	Mm.473746	NR_028426		Gm5129	EG332993|ENSMUSG00000053121	predicted gene 5129	ncRNA	0.145000	0.646766	
mm_57901.1	chr6	131388255	131388455	-	1	NA	NA	NA	95	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.190000	0.786070	
mm_151077.1	chr19	47579638	47579838	+	1	NA	NA	NA	-281	NM_009289	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0.175000	0.786070	
mm_25016.1	chr3	98013393	98013593	+	1	NA	NA	NA	-45	NM_010928	18129	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.160000	0.766169	
mm_40068.1	chr5	34242741	34242941	+	1	NA	NA	NA	45483	NM_001015039	231125	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.030000	0.577114	
mm_71262.1	chr8	40918401	40918601	+	1	NA	NA	NA	-7732	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.020000	0.472637	
mm_151225.1	chr19	53717751	53717951	+	1	NA	NA	NA	40545	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.015000	0.512438	
mm_61004.1	chr7	49347354	49347554	+	1	NA	NA	NA	101265	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.015000	0.492537	
mm_135833.1	chr16	58523430	58523630	-	1	NA	NA	NA	-218	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.070000	0.651741	
mm_670.1	chr1	40462249	40462449	+	1	NA	NA	NA	-3203	NM_001161842	16182	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0.010000	0.353234	49(TTCTTTTAAAAG,-,0.00),50(TCTTTTAAAAGC,+,0.00),50(TCTTTTAAAAGC,-,0.00),51(CTTTTAAAAGCT,+,0.00)
mm_150916.1	chr19	46075843	46076043	+	1	NA	NA	NA	96	NM_001039351	70769	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	0.130000	0.631841	
mm_17043.1	chr2	20869938	20870138	-	1	NA	NA	NA	97683	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.005000	0.278607	
mm_75791.1	chr8	70095595	70095795	-	1	NA	NA	NA	6891	NR_106033	102465646		NR_106033	ENSMUSG00000099042	Mir7066	Gm27290|mmu-mir-7066	microRNA 7066	ncRNA	0.000000	0.467662	61(TCTTATATACTG,+,0.00),85(TCTCTTAGAGCC,+,0.00)
mm_57659.1	chr6	128486874	128487074	-	1	NA	NA	NA	39746	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.010000	0.472637	
mm_72168.1	chr8	72247323	72247523	+	1	NA	NA	NA	7405	NM_007456	11767	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	0.000000	0.462687	
mm_21452.1	chr2	160682651	160682851	-	1	NA	NA	NA	36854	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.005000	0.333333	
mm_94827.1	chr11	23306451	23306651	+	1	NA	NA	NA	-344	NM_001190401	17847	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.145000	0.731343	
mm_86565.1	chr10	11284906	11285106	+	1	NA	NA	NA	3419	NM_001168297	71865	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0.000000	0.273632	
mm_38749.1	chr4	145300676	145300876	-	1	NA	NA	NA	14371	NM_009401	21941	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0.015000	0.422886	
mm_34849.1	chr4	155469033	155469233	+	1	NA	NA	NA	19	NM_027161	69671	Mm.45401	NM_027161	ENSMUSG00000023153	Tmem52	2310043I08Rik	transmembrane protein 52	protein-coding	0.040000	0.641791	-39(CCTCATAAAGCT,+,0.00)
mm_70861.1	chr8	24502987	24503187	+	1	NA	NA	NA	-18101	NR_035483	100316707		NR_035483	ENSMUSG00000088552	Mir1957a	Mir1957|mmu-mir-1957|mmu-mir-1957a	microRNA 1957a	ncRNA	0.030000	0.552239	
mm_66192.1	chr7	34213340	34213540	-	1	NA	NA	NA	-16793	NM_026549	68079	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.010000	0.497512	
mm_148361.1	chr18	85697946	85698146	-	1	NA	NA	NA	-696906	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.050000	0.666667	
mm_1072.1	chr1	59432074	59432274	+	1	NA	NA	NA	-49973	NM_008057	14369	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.010000	0.517413	
mm_59422.1	chr7	27124520	27124720	+	1	NA	NA	NA	4665	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.005000	0.447761	
mm_53765.1	chr6	145815307	145815507	+	1	NA	NA	NA	7024	NM_027760	71323	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.030000	0.562189	
mm_146872.1	chr18	25421928	25422128	-	1	NA	NA	NA	253008	NM_001033532	225289	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	0.005000	0.368159	
mm_13777.1	chr2	118746887	118747087	+	1	NA	NA	NA	1229	NM_001301269	100043272	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik|ENSMUSG00000074918	InaF motif containing 2	protein-coding	0.035000	0.492537	
mm_67019.1	chr7	65635896	65636096	-	1	NA	NA	NA	-8902	NM_172310	272396	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0.010000	0.532338	-95(GTCTTTTAAAGT,-,0.00),-94(TCTTTTAAAGTT,+,0.00)
mm_126889.1	chr15	89497864	89498064	+	1	NA	NA	NA	-1893	NM_021423	58234	Mm.146855	NM_021423	ENSMUSG00000022623	Shank3	AI841104|SHANK3c-3|SHANK3c-4|Shank3b	SH3/ankyrin domain gene 3	protein-coding	0.010000	0.592040	
mm_30545.1	chr4	3683618	3683818	+	1	NA	NA	NA	5597	NM_010747	17096	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.010000	0.492537	
mm_103191.1	chr11	70615605	70615805	-	1	NA	NA	NA	-189	NM_001145537	668433	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.055000	0.532338	
mm_120203.1	chr14	61681456	61681656	+	1	NA	NA	NA	817	NR_028264	668253	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.075000	0.671642	
mm_92651.1	chr10	80399353	80399553	-	1	NA	NA	NA	78	NM_013595	17192	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.145000	0.796020	
mm_120404.1	chr14	64953042	64953242	+	1	NA	NA	NA	3097	NM_001253731	210925	Mm.71332	NM_153414	ENSMUSG00000021975	Ints9	BC028953|D14Ertd231e	integrator complex subunit 9	protein-coding	0.020000	0.402985	
mm_106768.1	chr12	4593042	4593242	+	1	NA	NA	NA	134	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.165000	0.781095	
mm_49610.1	chr6	30747154	30747354	+	1	NA	NA	NA	5955	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.005000	0.442786	
mm_77720.1	chr8	126804071	126804271	-	1	NA	NA	NA	141750	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.010000	0.562189	
mm_102602.1	chr11	62392487	62392687	-	1	NA	NA	NA	45928	NM_001252313	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.005000	0.363184	18(GTTTATAAAGAC,+,0.00)
mm_65978.1	chr7	30444495	30444695	-	1	NA	NA	NA	987	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.040000	0.606965	
mm_149219.1	chr19	10001625	10001825	+	1	NA	NA	NA	56	NM_001347429	74760	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	0.005000	0.587065	
mm_91485.1	chr10	36750094	36750294	-	1	NA	NA	NA	-224350	NM_008229	15182	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.000000	0.557214	-34(CACTATAAAAGG,-,0.00)
mm_92631.1	chr10	80323304	80323504	-	1	NA	NA	NA	-2856	NM_025521	66374	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.060000	0.661692	
mm_94328.1	chr11	4266389	4266589	+	1	NA	NA	NA	-307	NM_001039537	16878	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.010000	0.452736	
mm_143969.1	chr17	87282707	87282907	-	1	NA	NA	NA	7	NR_015506	74597	Mm.63783	NR_015506	ENSMUSG00000085287	4833418N02Rik	-	RIKEN cDNA 4833418N02 gene	ncRNA	0.125000	0.751244	
mm_48465.1	chr5	140830243	140830443	-	1	NA	NA	NA	88	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.160000	0.830846	
mm_59259.1	chr7	24870893	24871093	+	1	NA	NA	NA	936	NM_027732	71241	Mm.66855	NM_027732	ENSMUSG00000011349	Dmrtc2	4933432E21Rik|Dmrt7	doublesex and mab-3 related transcription factor like family C2	protein-coding	0.020000	0.373134	
mm_12833.1	chr2	80635179	80635379	+	1	NA	NA	NA	-3533	NM_027091	69482	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	0.030000	0.447761	-79(GCTTATATAACA,+,0.00)
mm_37153.1	chr4	117121170	117121370	-	1	NA	NA	NA	4455	NR_024078	78611	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0.080000	0.666667	
mm_87108.1	chr10	33197266	33197466	+	1	NA	NA	NA	58991	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.000000	0.253731	
mm_111887.1	chr12	108274286	108274486	-	1	NA	NA	NA	1031	NM_001159910	668158	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010	coiled-coil domain containing 85C	protein-coding	0.105000	0.686567	
mm_147806.1	chr18	61665393	61665593	-	1	NA	NA	NA	45	NR_045402	328968	Mm.392305	NR_045402		Carmn	Carmen|E330013P06|Gm16908|Mir143hg	cardiac mesoderm enhancer-associated non-coding RNA	ncRNA	0.030000	0.606965	-35(GCTCATATAAGG,-,0.00),52(GCTTAAAAATGC,+,0.00)
mm_78945.1	chr9	45138445	45138645	+	1	NA	NA	NA	-497	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.065000	0.611940	
mm_141730.1	chr17	34116917	34117117	-	1	NA	NA	NA	2883	NR_037970	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.015000	0.547264	
mm_81992.1	chr9	121460193	121460393	+	1	NA	NA	NA	35401	NM_001284508	12424	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.010000	0.557214	
mm_105492.1	chr11	106159114	106159314	-	1	NA	NA	NA	928	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.030000	0.621891	
mm_56242.1	chr6	90716416	90716616	-	1	NA	NA	NA	13	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.085000	0.711443	
mm_71712.1	chr8	61938101	61938301	+	1	NA	NA	NA	10114	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.000000	0.442786	
mm_58932.1	chr7	17975493	17975693	+	1	NA	NA	NA	3426	NM_023289	66996	Mm.36666	NM_023289	ENSMUSG00000030368	Ceacam11	1600015D01Rik	carcinoembryonic antigen-related cell adhesion molecule 11	protein-coding	0.005000	0.417910	
mm_66674.1	chr7	45742257	45742457	-	1	NA	NA	NA	-16541	NM_027055	69363	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	0.035000	0.562189	
mm_112498.1	chr13	8202766	8202966	+	1	NA	NA	NA	0	NM_001289530	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding	0.040000	0.537313	
mm_123830.1	chr14	70626995	70627195	-	1	NA	NA	NA	-30	NM_001252663	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.060000	0.681592	
mm_137622.1	chr17	28299958	28300158	+	1	NA	NA	NA	-13472	NR_028297	72775	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	0.020000	0.651741	
mm_1778.1	chr1	78511711	78511911	+	1	NA	NA	NA	751	NM_026713	68393	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	0.050000	0.641791	
mm_3277.1	chr1	136574257	136574457	+	1	NA	NA	NA	-50544	NM_177643	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.015000	0.402985	
mm_109716.1	chr12	116047660	116047860	+	1	NA	NA	NA	36	NM_019565	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0.055000	0.537313	
mm_92535.1	chr10	79587022	79587222	-	1	NA	NA	NA	14	NM_199226	21830	Mm.89197	NM_011583	ENSMUSG00000020317	Theg	-	testicular haploid expressed gene	protein-coding	0.010000	0.557214	
mm_55221.1	chr6	52230465	52230665	-	1	NA	NA	NA	-400	NR_029912	723820		NR_029912	ENSMUSG00000065443	Mir196b	Mirn196b|mir-196b	microRNA 196b	ncRNA	0.085000	0.681592	
mm_9001.1	chr1	165789902	165790102	-	1	NA	NA	NA	1321	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.010000	0.507463	
mm_24065.1	chr3	87915524	87915724	+	1	NA	NA	NA	-3920	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.000000	0.358209	
mm_68097.1	chr7	101934237	101934437	-	1	NA	NA	NA	-480	NM_001162973	69358	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0.060000	0.597015	
mm_14583.1	chr2	135764823	135765023	+	1	NA	NA	NA	23093	NM_013829	18798	Mm.38009	NM_013829	ENSMUSG00000039943	Plcb4	A930039J07Rik|AI854601|C230058B11Rik	phospholipase C, beta 4	protein-coding	0.015000	0.567164	
mm_129388.1	chr15	78201578	78201778	-	1	NA	NA	NA	2559	NM_001330686	19293	Mm.2766	NM_013645	ENSMUSG00000005716	Pvalb	PV|Parv|Pva	parvalbumin	protein-coding	0.005000	0.512438	
mm_36457.1	chr4	82505278	82505478	-	1	NA	NA	NA	401	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.125000	0.756219	
mm_37927.1	chr4	132882339	132882539	-	1	NA	NA	NA	2019	NM_133887	100226	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	0.000000	0.318408	
mm_100929.1	chr11	6475947	6476147	-	1	NA	NA	NA	29	NM_011221	19291	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0.200000	0.840796	
mm_139613.1	chr17	57360348	57360548	+	1	NA	NA	NA	1762	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.492537	
mm_42358.1	chr5	114911688	114911888	+	1	NA	NA	NA	-11452	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.010000	0.477612	
mm_165514.1	chr2	173173566	173173766	+	1	NA	NA	NA	20593	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.050000	0.517413	
mm_125577.1	chr15	59459695	59459895	+	1	NA	NA	NA	85597	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.005000	0.393035	
mm_113650.1	chr13	42301860	42302060	+	1	NA	NA	NA	484	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.035000	0.427861	
mm_33056.1	chr4	123183630	123183830	+	1	NA	NA	NA	226	NM_174998	170638	Mm.270641	NM_174998	ENSMUSG00000046093	Hpcal4	AI846570|NVP-2	hippocalcin-like 4	protein-coding	0.035000	0.621891	
mm_45578.1	chr5	73647637	73647837	-	1	NA	NA	NA	-6	NM_011890	24051	Mm.89310	NM_011890	ENSMUSG00000029156	Sgcb	43kDa|AI747103|AI844814|beta-SG	sarcoglycan, beta (dystrophin-associated glycoprotein)	protein-coding	0.105000	0.706468	
mm_81874.1	chr9	119119542	119119742	+	1	NA	NA	NA	17164	NM_177117	320256	Mm.110648	NM_177117	ENSMUSG00000038060	Dlec1	D630005C06Rik	deleted in lung and esophageal cancer 1	protein-coding	0.045000	0.562189	
mm_99860.1	chr11	109365083	109365283	+	1	NA	NA	NA	-1529	NR_038097	100036768	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	OTTMUSG00000003456	predicted gene 11696	ncRNA	0.040000	0.502488	
mm_143337.1	chr17	66494600	66494800	-	1	NA	NA	NA	24970	NM_024448	19328	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0.000000	0.363184	
mm_44896.1	chr5	35391812	35392012	-	1	NA	NA	NA	2795	NM_010445	15371	Mm.358606	NM_010445	ENSMUSG00000067438	Hmx1	Nkx5-3	H6 homeobox 1	protein-coding	0.150000	0.726368	
mm_134872.1	chr16	28753122	28753322	-	1	NA	NA	NA	21	NM_010199	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.050000	0.562189	
mm_140515.1	chr17	5988096	5988296	-	1	NA	NA	NA	12610	NM_011523	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.010000	0.507463	
mm_143706.1	chr17	80641143	80641343	-	1	NA	NA	NA	-77409	NM_001033443	381113	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.005000	0.472637	
mm_35827.1	chr4	47346493	47346693	-	1	NA	NA	NA	-6629	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.015000	0.537313	
mm_67027.1	chr7	66388214	66388414	-	1	NA	NA	NA	27	NM_146191	233328	Mm.33284	NM_146191	ENSMUSG00000015133	Lrrk1	AW319595|C230002E15Rik|D130026O16Rik|mKIAA1790	leucine-rich repeat kinase 1	protein-coding	0.110000	0.731343	
mm_126006.1	chr15	76538848	76539048	+	1	NA	NA	NA	5	NM_029643	52710	Mm.28597	NM_029643	ENSMUSG00000022560	Slc52a2	2010003P03Rik|D15Ertd747e|GPCR42|Gpr172b|PAR2|mRFT1	solute carrier protein 52, member 2	protein-coding	0.070000	0.646766	
mm_93654.1	chr10	117413812	117414012	-	1	NA	NA	NA	-36939	NM_001310609	432508	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.010000	0.452736	
mm_116687.1	chr13	49298588	49298788	-	1	NA	NA	NA	10520	NM_015759	30938	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.035000	0.587065	
mm_107303.1	chr12	30953527	30953727	+	1	NA	NA	NA	41958	NM_013709	24057	Mm.218624	NM_013709	ENSMUSG00000020669	Sh3yl1	AI314953|Ray|YSC84	Sh3 domain YSC-like 1	protein-coding	0.000000	0.253731	
mm_169238.1	chr13	72392757	72392957	-	1	NA	NA	NA	235707	NR_030701	328287	Mm.235072	NR_030701		Gm20554	D430050G20	predicted gene, 20554	ncRNA	0.030000	0.487562	
mm_99702.1	chr11	106160120	106160320	+	1	NA	NA	NA	-78	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.150000	0.796020	
mm_105312.1	chr11	102862583	102862783	-	1	NA	NA	NA	18292	NM_011431	20624	Mm.873	NM_011431	ENSMUSG00000020929	Eftud2	116kDa|Snrp116|U5-116kD	elongation factor Tu GTP binding domain containing 2	protein-coding	0.030000	0.497512	
mm_14911.1	chr2	150570401	150570601	+	1	NA	NA	NA	86	NM_009977	13011	Mm.12965	NM_009977	ENSMUSG00000068129	Cst7	Cmap	cystatin F (leukocystatin)	protein-coding	0.015000	0.577114	
mm_54425.1	chr6	33060162	33060362	-	1	NA	NA	NA	-110	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0.060000	0.606965	
mm_65588.1	chr7	27311099	27311299	-	1	NA	NA	NA	22449	NM_001113549	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.015000	0.572139	
mm_50996.1	chr6	63331411	63331611	+	1	NA	NA	NA	74654	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.005000	0.303483	
mm_96989.1	chr11	70657747	70657947	+	1	NA	NA	NA	671	NM_007933	13808	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.020000	0.537313	-57(GACTCTTAAAAG,-,0.00),-56(ACTCTTAAAAGG,-,0.00),-55(CTCTTAAAAGGG,+,0.00),-54(TCTTAAAAGGGC,+,0.00)
mm_76493.1	chr8	86527606	86527806	-	1	NA	NA	NA	38884	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	0.025000	0.532338	
mm_151831.1	chr19	5663606	5663806	-	1	NA	NA	NA	1	NM_001164482	20469	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0.085000	0.716418	
mm_5497.1	chr1	36958418	36958618	-	1	NA	NA	NA	-18991	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.040000	0.457711	
mm_45237.1	chr5	53706419	53706619	-	1	NA	NA	NA	1185	NM_009827	12425	Mm.3521	NM_009827	ENSMUSG00000029193	Cckar	AW106902	cholecystokinin A receptor	protein-coding	0.010000	0.517413	
mm_50684.1	chr6	51575781	51575981	+	1	NA	NA	NA	31358	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.035000	0.547264	
mm_167358.1	chr8	84558935	84559135	+	1	NA	NA	NA	103817	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.075000	0.631841	
mm_144588.1	chr18	32067670	32067870	+	1	NA	NA	NA	36	NM_173441	73473	Mm.66853	NM_173441	ENSMUSG00000024384	Iws1	1700069O15Rik|3000008H23|AL117927|AW214353	IWS1, SUPT6 interacting protein	protein-coding	0.085000	0.611940	
mm_100613.1	chr11	121487884	121488084	+	1	NA	NA	NA	31358	NM_178763	319530	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.005000	0.412935	-16(GCTTTAAAGCTG,+,0.00)
mm_109203.1	chr12	108667161	108667361	+	1	NA	NA	NA	8641	NR_029771	723909		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.025000	0.582090	
mm_169091.1	chr13	38665105	38665305	+	1	NA	NA	NA	-6177	NM_025380	66143	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	0.010000	0.482587	
mm_171886.1	chr5	35771087	35771287	-	1	NA	NA	NA	13307	NM_001177698	231148	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0.040000	0.597015	
mm_3947.1	chr1	163994785	163994985	+	1	NA	NA	NA	-60	NM_027279	69962	Mm.27284	NM_027279	ENSMUSG00000041396	Mettl18	2810422O20Rik|C78571	methyltransferase like 18	protein-coding	0.055000	0.577114	
mm_18664.1	chr2	70823313	70823513	-	1	NA	NA	NA	2067	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.000000	0.308458	
mm_25672.1	chr3	121967730	121967930	+	1	NA	NA	NA	14504	NM_172525	214137	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.060000	0.706468	
mm_36139.1	chr4	59438198	59438398	-	1	NA	NA	NA	335	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.105000	0.741294	
mm_106318.1	chr11	118303040	118303240	-	1	NA	NA	NA	-12896	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.015000	0.542289	
mm_51453.1	chr6	80809489	80809689	+	1	NA	NA	NA	789946	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.000000	0.338308	
mm_100031.1	chr11	114929956	114930156	+	1	NA	NA	NA	4330	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.000000	0.363184	
mm_157585.1	chrX	53070377	53070577	-	1	NA	NA	NA	-13287	NR_038184	72575	Mm.59516	NR_038184		C430049B03Rik	2700063P19Rik|9430052C07Rik|mir-322|mir-351|mir-503	RIKEN cDNA C430049B03 gene	ncRNA	0.050000	0.527363	
mm_135017.1	chr16	32487551	32487751	-	1	NA	NA	NA	228	NM_145932	106407	Mm.476915	NM_145932	ENSMUSG00000035699	Slc51a	AV001382|AW261577|D630035O19Rik|OSTalpha|Osta	solute carrier family 51, alpha subunit	protein-coding	0.025000	0.547264	
mm_21652.1	chr2	164334201	164334401	-	1	NA	NA	NA	1536	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.015000	0.427861	
mm_3494.1	chr1	150106496	150106696	+	1	NA	NA	NA	6565	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.432836	-8(GAGCTTTAAAGC,-,0.00),-6(GCTTTAAAGCTC,+,0.00)
mm_141746.1	chr17	34187266	34187466	-	1	NA	NA	NA	-36	NM_013585	16912	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	0.090000	0.661692	
mm_23331.1	chr3	54246039	54246239	+	1	NA	NA	NA	90082	NM_001253682	22066	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0.005000	0.462687	
mm_9411.1	chr1	172289293	172289493	-	1	NA	NA	NA	8671	NM_178405	98660	Mm.207432	NM_178405	ENSMUSG00000007097	Atp1a2	AW060654|Atpa-3|mKIAA0778	ATPase, Na+/K+ transporting, alpha 2 polypeptide	protein-coding	0.035000	0.567164	
mm_126122.1	chr15	78325915	78326115	+	1	NA	NA	NA	25	NM_007780	12983	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.020000	0.532338	
mm_68472.1	chr7	110773190	110773390	-	1	NA	NA	NA	686	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.025000	0.552239	58(TTCCCTAAAAGA,-,0.00)
mm_151692.1	chr19	4333924	4334124	-	1	NA	NA	NA	-27802	NM_001290818	110355	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.040000	0.636816	
mm_15109.1	chr2	153609727	153609927	+	1	NA	NA	NA	22954	NM_001195390	99311	Mm.294478	NM_133850	ENSMUSG00000056941	Commd7	2310010I22Rik|AW060956|mU3	COMM domain containing 7	protein-coding	0.020000	0.621891	
mm_24353.1	chr3	90051451	90051651	+	1	NA	NA	NA	-85	NM_001287087	99650	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	0.010000	0.447761	
mm_78803.1	chr9	44047827	44048027	+	1	NA	NA	NA	4543	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.010000	0.532338	
mm_10288.1	chr2	10365278	10365478	+	1	NA	NA	NA	-5073	NM_001198808	353282	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0.020000	0.383085	
mm_151624.1	chr19	3907874	3908074	-	1	NA	NA	NA	-841	NM_001136091	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.020000	0.547264	
mm_120877.1	chr14	75284232	75284432	+	1	NA	NA	NA	-41	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0.095000	0.636816	38(GCTTTTAGATGC,+,0.00)
mm_173225.1	chrX	76707478	76707678	-	1	NA	NA	NA	-104654	NM_001201395	74987	Mm.107996	NM_001201395	ENSMUSG00000079525	Cldn34d	4930468A15Rik	claudin 34D	protein-coding	0.030000	0.537313	
mm_163726.1	chr13	119597696	119597896	-	1	NA	NA	NA	-26023	NM_020279	56838	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.015000	0.572139	
mm_130132.1	chr15	90679248	90679448	-	1	NA	NA	NA	40	NM_025815	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0.115000	0.706468	
mm_51109.1	chr6	67285233	67285433	+	1	NA	NA	NA	18354	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.005000	0.273632	
mm_68676.1	chr7	118983655	118983855	-	1	NA	NA	NA	11456	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.030000	0.582090	
mm_134158.1	chr16	10791381	10791581	-	1	NA	NA	NA	-567	NM_013638	19120	Mm.291887	NM_013638	ENSMUSG00000050058	Prm3	BC061127|PX|Pxg	protamine 3	protein-coding	0.015000	0.547264	
mm_47184.1	chr5	120753843	120754043	-	1	NA	NA	NA	-4095	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.000000	0.323383	
mm_88412.1	chr10	77033149	77033349	+	1	NA	NA	NA	37	NM_031196	20509	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.070000	0.616915	
mm_59899.1	chr7	30308650	30308850	+	1	NA	NA	NA	-3	NM_198027	233065	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	0.070000	0.582090	
mm_115028.1	chr13	99230173	99230373	+	1	NA	NA	NA	45450	NM_001004149	238803	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.015000	0.537313	
mm_160588.1	chr9	65576679	65576879	-	1	NA	NA	NA	3308	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.015000	0.562189	
mm_120241.1	chr14	62960594	62960794	+	1	NA	NA	NA	23816	NM_001037751	432867	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0.005000	0.343284	
mm_22618.1	chr3	14603649	14603849	+	1	NA	NA	NA	7472	NM_001347206	69126	Mm.389020	NM_001099674	ENSMUSG00000078784	1810022K09Rik	AI746582|AL023036	RIKEN cDNA 1810022K09 gene	protein-coding	0.000000	0.467662	
mm_65174.1	chr7	19691909	19692109	-	1	NA	NA	NA	650	NM_001110009	11812	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0.045000	0.547264	
mm_57641.1	chr6	128413607	128413807	-	1	NA	NA	NA	11203	NM_133927	101142	Mm.31345	NM_133927	ENSMUSG00000001518	Itfg2	2700050P07Rik|AI646725	integrin alpha FG-GAP repeat containing 2	protein-coding	0.005000	0.616915	
mm_157815.1	chrX	74014810	74015010	-	1	NA	NA	NA	8688	NR_039594	100628601		NR_039594	ENSMUSG00000092907	Mir5132	mir-5132|mmu-mir-5132|mu-mir-5132	microRNA 5132	ncRNA	0.005000	0.388060	
mm_88134.1	chr10	69398769	69398969	+	1	NA	NA	NA	-45957	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.120000	0.766169	
mm_86837.1	chr10	21395844	21396044	+	1	NA	NA	NA	18644	NM_178713	237320	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0.015000	0.457711	
mm_20894.1	chr2	148875333	148875533	-	1	NA	NA	NA	79	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.065000	0.606965	
mm_8041.1	chr1	135271482	135271682	-	1	NA	NA	NA	12502	NM_145417	215615	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	0.020000	0.537313	
mm_53811.1	chr6	146933351	146933551	+	1	NA	NA	NA	20970	NM_001164236	73344	Mm.391543	NM_028509	ENSMUSG00000040163	1700034J05Rik	-	RIKEN cDNA 1700034J05 gene	protein-coding	0.020000	0.557214	
mm_54802.1	chr6	41700628	41700828	-	1	NA	NA	NA	3597	NM_032540	23925	Mm.19958	NM_032540	ENSMUSG00000029866	Kel	CD238|Ece3	Kell blood group	protein-coding	0.010000	0.427861	
mm_134006.1	chr16	4790160	4790360	-	1	NA	NA	NA	-325	NM_025670	66626	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0.075000	0.661692	
mm_118006.1	chr13	100616600	100616800	-	1	NA	NA	NA	244	NM_178410	218518	Mm.25300	NM_178410	ENSMUSG00000021636	Marveld2	BC003296|MARVD2|Mrvldc2|Tric|Trica|Tricb|Tricc	MARVEL (membrane-associating) domain containing 2	protein-coding	0.125000	0.726368	
mm_90884.1	chr10	9898226	9898426	-	1	NA	NA	NA	2714	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0.000000	0.263682	69(TCTTTTATACTA,+,0.00)
mm_166103.1	chr4	146501895	146502095	+	1	NA	NA	NA	-5	NM_001243138	100041433	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247|OTTMUSG00000011075	zinc finger protein 981	protein-coding	0.020000	0.497512	
mm_64949.1	chr7	16387665	16387865	-	1	NA	NA	NA	131	NM_001285892	56459	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	0.125000	0.711443	
mm_102036.1	chr11	51857000	51857200	-	1	NA	NA	NA	381	NM_199299	76901	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.055000	0.601990	8(GTGTTTTAAAGA,-,0.00)
mm_8469.1	chr1	153332864	153333064	-	1	NA	NA	NA	-178	NM_010683	226519	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	0.115000	0.771144	
mm_93088.1	chr10	89621169	89621369	-	1	NA	NA	NA	-20	NM_182959	216227	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	0.025000	0.611940	
mm_46539.1	chr5	105718131	105718331	-	1	NA	NA	NA	17421	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.010000	0.437811	-33(CATTTTAAAAGG,-,0.00)
mm_128384.1	chr15	43019027	43019227	-	1	NA	NA	NA	151691	NM_172815	239405	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.000000	0.343284	
mm_64970.1	chr7	16619773	16619973	-	1	NA	NA	NA	-4880	NM_172739	232906	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.005000	0.467662	
mm_17447.1	chr2	28539611	28539811	-	1	NA	NA	NA	6247	NM_001145836	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.015000	0.557214	
mm_64376.1	chr7	142460728	142460928	+	1	NA	NA	NA	16	NM_001136071	16985	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.025000	0.562189	
mm_201.1	chr1	16105302	16105502	+	1	NA	NA	NA	-480	NM_133832	98711	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.125000	0.741294	
mm_41547.1	chr5	92898054	92898254	+	1	NA	NA	NA	161	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.175000	0.776119	
mm_74854.1	chr8	24725690	24725890	-	1	NA	NA	NA	62	NM_009619	11497	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	0.040000	0.577114	
mm_41984.1	chr5	107597649	107597849	+	1	NA	NA	NA	53	NM_001289569	231571	Mm.482420	NM_144911	ENSMUSG00000033773	Rpap2	AW060207	RNA polymerase II associated protein 2	protein-coding	0.095000	0.731343	
mm_160021.1	chr6	130067179	130067379	-	1	NA	NA	NA	-8	NM_001252577	16635	Mm.333431	NM_010649	ENSMUSG00000079852	Klra4	Chok|Klra32|Klra33|Ly-49d|Ly49d|ly49r<129>	killer cell lectin-like receptor, subfamily A, member 4	protein-coding	0.000000	0.457711	21(GCCTCTAAGGGG,-,0.00),38(CACCAGAAAAGG,-,0.00)
mm_74705.1	chr8	17065351	17065551	-	1	NA	NA	NA	469934	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.005000	0.432836	
mm_155299.1	chrX	61185585	61185785	+	1	NA	NA	NA	-127	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.015000	0.383085	
mm_34737.1	chr4	152199747	152199947	+	1	NA	NA	NA	3	NM_001146058	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.005000	0.562189	
mm_125400.1	chr15	41447400	41447600	+	1	NA	NA	NA	18	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.165000	0.786070	
mm_19122.1	chr2	80065125	80065325	-	1	NA	NA	NA	63746	NM_016744	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.020000	0.492537	-34(GAGTATAAATAG,-,0.00)
mm_38910.1	chr4	149980848	149981048	-	1	NA	NA	NA	22288	NM_001291004	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.020000	0.552239	
mm_68119.1	chr7	102116627	102116827	-	1	NA	NA	NA	-14	NM_001081424	504186	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	0.005000	0.522388	
mm_28889.1	chr3	97868176	97868376	-	1	NA	NA	NA	20431	NM_001289702	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.125000	0.761194	
mm_60238.1	chr7	43713091	43713291	+	1	NA	NA	NA	624	NM_001039042	626834	Mm.389891	NM_001039042	ENSMUSG00000054046	Klk13	Egfbp-2|mGk-13	kallikrein related-peptidase 13	protein-coding	0.020000	0.626866	
mm_127286.1	chr15	100038552	100038752	+	1	NA	NA	NA	-12	NM_001159361	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.155000	0.781095	
mm_130595.1	chr15	99723696	99723896	-	1	NA	NA	NA	-1822	NM_183256	66379	Mm.5265	NM_183256	ENSMUSG00000023020	Cox14	2310016M24Rik|AA959804	cytochrome c oxidase assembly protein 14	protein-coding	0.010000	0.527363	
mm_138750.1	chr17	37045869	37046069	+	1	NA	NA	NA	3	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.105000	0.766169	
mm_36468.1	chr4	82705530	82705730	-	1	NA	NA	NA	154031	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0.025000	0.507463	
mm_66473.1	chr7	44986295	44986495	-	1	NA	NA	NA	25	NM_001252476	15469	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	0.070000	0.611940	
mm_161149.1	chr13	23136405	23136605	+	1	NA	NA	NA	20	NM_134222	171256	Mm.377210	NM_134222	ENSMUSG00000060490	Vmn1r218	V1ri5	vomeronasal 1 receptor 218	protein-coding	0.005000	0.348259	
mm_173037.1	chrX	107175573	107175773	-	1	NA	NA	NA	26058	NM_175442	213438	Mm.265244	NM_175442	ENSMUSG00000054293	A630033H20Rik	AI662791|P2ry10	RIKEN cDNA A630033H20 gene	protein-coding	0.025000	0.497512	-35(GTGTATATAAGC,-,0.00)
mm_103416.1	chr11	75532930	75533130	-	1	NA	NA	NA	918	NM_001199283	215113	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.020000	0.457711	
mm_19615.1	chr2	102811775	102811975	-	1	NA	NA	NA	89790	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.000000	0.343284	
mm_18210.1	chr2	48946220	48946420	-	1	NA	NA	NA	2947	NM_001177313	26428	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0.000000	0.303483	-40(GCATTTAAAGAG,+,0.00)
mm_70695.1	chr8	15027285	15027485	+	1	NA	NA	NA	16360	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.030000	0.592040	
mm_101008.1	chr11	8503689	8503889	-	1	NA	NA	NA	160746	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.035000	0.547264	
mm_127506.1	chr15	101469304	101469504	+	1	NA	NA	NA	-4074	NM_010667	16679	Mm.383183	NM_010667	ENSMUSG00000067614	Krt86	5430421N21Rik|AI325212|Khb4|Krt2-10|Krt2-11|MHb4	keratin 86	protein-coding	0.010000	0.527363	
mm_44925.1	chr5	36036866	36037066	-	1	NA	NA	NA	143647	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	0.000000	0.462687	
mm_104004.1	chr11	84916255	84916455	-	1	NA	NA	NA	1	NM_001005223	448850	Mm.379733	NM_001005223	ENSMUSG00000020526	Znhit3	Myohd1|Trip3	zinc finger, HIT type 3	protein-coding	0.060000	0.537313	
mm_147524.1	chr18	52529601	52529801	-	1	NA	NA	NA	20	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.045000	0.587065	
mm_57442.1	chr6	124965162	124965362	-	1	NA	NA	NA	135	NM_012003	26894	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e	COP9 signalosome subunit 7A	protein-coding	0.095000	0.661692	-67(GCCTCTTTAAGG,-,0.00)
mm_92849.1	chr10	81524035	81524235	-	1	NA	NA	NA	90	NM_010304	14676	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.025000	0.691542	
mm_135063.1	chr16	34095922	34096122	-	1	NA	NA	NA	-129019	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.060000	0.686567	
mm_90673.1	chr10	128900245	128900445	+	1	NA	NA	NA	-8574	NM_001042580	12512	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.015000	0.502488	
mm_39519.1	chr5	21257827	21258027	+	1	NA	NA	NA	71660	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.025000	0.482587	
mm_158932.1	chr1	66468218	66468418	+	1	NA	NA	NA	-129	NM_175510	329178	Mm.44798	NM_175510	ENSMUSG00000055567	Unc80	C030018G13Rik|C230061B10Rik|UNC-80	unc-80, NALCN activator	protein-coding	0.135000	0.781095	
mm_116670.1	chr13	49207962	49208162	-	1	NA	NA	NA	7964	NM_026738	68480	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.040000	0.577114	
mm_125235.1	chr15	34143825	34144025	+	1	NA	NA	NA	61206	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.005000	0.358209	
mm_37279.1	chr4	118954731	118954931	-	1	NA	NA	NA	88	NR_137285	100038571	Mm.426714	NR_137285	ENSMUSG00000073765	Gm12863	OTTMUSG00000008822	predicted gene 12863	ncRNA	0.015000	0.462687	
mm_104393.1	chr11	94491258	94491458	-	1	NA	NA	NA	-6048	NM_144827	217116	Mm.156123	NM_144827	ENSMUSG00000020867	Spata20	Tisp78	spermatogenesis associated 20	protein-coding	0.115000	0.721393	
mm_13923.1	chr2	120692488	120692688	+	1	NA	NA	NA	38929	NM_026891	68968	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	0.000000	0.457711	
mm_115271.1	chr13	111685965	111686165	+	1	NA	NA	NA	-113	NM_172593	218613	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0.140000	0.800995	
mm_41998.1	chr5	107900405	107900605	+	1	NA	NA	NA	-23	NM_016980	100503670	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	0.080000	0.587065	
mm_144921.1	chr18	37668840	37669040	+	1	NA	NA	NA	-165	NM_033585	93710	Mm.247203	NM_033585	ENSMUSG00000103332	Pcdhga2	mKIAA0588	protocadherin gamma subfamily A, 2	protein-coding	0.035000	0.537313	
mm_150290.1	chr19	34492748	34492948	+	1	NA	NA	NA	-17713	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.010000	0.388060	-5(GCTTTTCAAGAG,+,0.00)
mm_14797.1	chr2	145878733	145878933	+	1	NA	NA	NA	-24408	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.020000	0.457711	
mm_23000.1	chr3	34046352	34046552	+	1	NA	NA	NA	26373	NM_001113188	14359	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0.015000	0.338308	-42(AGCTTTTAAAAG,-,0.00),-41(GCTTTTAAAAGA,+,0.00),-41(GCTTTTAAAAGA,-,0.00),-40(CTTTTAAAAGAA,+,0.00)
mm_80603.1	chr9	86571893	86572093	+	1	NA	NA	NA	5	NM_001145969	69519	Mm.272517	NM_027100	ENSMUSG00000032417	Rwdd2a	1700030C20Rik|AI848608|Rwdd2	RWD domain containing 2A	protein-coding	0.120000	0.711443	
mm_4567.1	chr1	177448147	177448347	+	1	NA	NA	NA	2426	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.040000	0.601990	
mm_164921.1	chr18	77176986	77177186	+	1	NA	NA	NA	-8761	NM_153124	225742	Mm.365178	NM_013666	ENSMUSG00000025425	St8sia5	ST8SiaV|Siat8e	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding	0.010000	0.517413	66(TGCCATAAAGAG,-,0.00)
mm_170023.1	chr17	21474966	21475166	+	1	NA	NA	NA	-13922	NM_013843	24132	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	0.020000	0.577114	
mm_119045.1	chr14	30607817	30608017	+	1	NA	NA	NA	2393	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.015000	0.587065	
mm_114945.1	chr13	96542979	96543179	+	1	NA	NA	NA	344	NM_023420	68018	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	0.130000	0.726368	
mm_78170.1	chr9	21079633	21079833	+	1	NA	NA	NA	-4145	NR_106050	102465656		NR_106050	ENSMUSG00000098907	Mir7082	Gm27933|mmu-mir-7082	microRNA 7082	ncRNA	0.030000	0.656716	76(CCCCCTAAAGAG,-,0.00)
mm_71792.1	chr8	66889142	66889342	+	1	NA	NA	NA	29025	NM_001163564	234344	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0.020000	0.497512	
mm_91489.1	chr10	37135550	37135750	-	1	NA	NA	NA	3276	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.000000	0.383085	
mm_47770.1	chr5	131538643	131538843	-	1	NA	NA	NA	-231221	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.140000	0.781095	
mm_172817.1	chr9	123690175	123690375	-	1	NA	NA	NA	-11443	NM_139142	102680	Mm.440867	NM_139142	ENSMUSG00000036814	Slc6a20a	A730081N20Rik|AU022428|Xt3s1|Xtrp3s1	solute carrier family 6 (neurotransmitter transporter), member 20A	protein-coding	0.045000	0.422886	
mm_171995.1	chr6	10146899	10147099	+	1	NA	NA	NA	827379	NR_033776	57866	Mm.4397	NR_033776		AA545190	-	EST AA545190	ncRNA	0.030000	0.447761	
mm_5892.1	chr1	54438867	54439067	-	1	NA	NA	NA	59	NM_001033194	98488	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0.095000	0.666667	
mm_14183.1	chr2	127078823	127079023	+	1	NA	NA	NA	8266	NM_026678	109778	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0.005000	0.358209	
mm_80703.1	chr9	92249651	92249851	+	1	NA	NA	NA	-443	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.020000	0.398010	
mm_137161.1	chr17	23803108	23803308	+	1	NA	NA	NA	21	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.150000	0.731343	
mm_154107.1	chr19	57118786	57118986	-	1	NA	NA	NA	138	NM_001347459	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.010000	0.582090	
mm_66873.1	chr7	57509304	57509504	-	1	NA	NA	NA	605	NM_176942	110886	Mm.273114	NM_176942	ENSMUSG00000055078	Gabra5	A230018I05Rik	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5	protein-coding	0.125000	0.756219	
mm_102182.1	chr11	54068884	54069084	-	1	NA	NA	NA	33	NM_019417	30794	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0.145000	0.786070	
mm_112075.1	chr12	112628940	112629140	-	1	NA	NA	NA	8993	NM_007421	11565	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.010000	0.597015	
mm_140969.1	chr17	24689831	24690031	-	1	NA	NA	NA	18	NM_011522	20974	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	0.115000	0.741294	
mm_28064.1	chr3	84259662	84259862	-	1	NA	NA	NA	17	NM_001271727	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.085000	0.621891	
mm_42868.1	chr5	122233324	122233524	+	1	NA	NA	NA	23137	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.035000	0.597015	
mm_54429.1	chr6	33992317	33992517	-	1	NA	NA	NA	-37031	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.010000	0.457711	
mm_51388.1	chr6	77243927	77244127	+	1	NA	NA	NA	1310	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.060000	0.606965	
mm_57496.1	chr6	125313731	125313931	-	1	NA	NA	NA	39	NM_010736	17000	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|CD18|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	0.095000	0.771144	
mm_84774.1	chr9	75683253	75683453	-	1	NA	NA	NA	703	NM_001164790	20255	Mm.2386	NM_009130	ENSMUSG00000032181	Scg3	1B1075|AI385542|Chgd|SgIII	secretogranin III	protein-coding	0.010000	0.313433	
mm_14920.1	chr2	151127367	151127567	+	1	NA	NA	NA	29222	NM_001097977	433486	Mm.422661	NM_001097977	ENSMUSG00000079006	Gm14151	OTTMUSG00000015806	predicted gene 14151	protein-coding	0.040000	0.477612	
mm_54845.1	chr6	42586830	42587030	-	1	NA	NA	NA	10442	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.353234	
mm_1280.1	chr1	63528664	63528864	+	1	NA	NA	NA	82873	NM_011780	23792	Mm.124892	NM_011780	ENSMUSG00000025964	Adam23	AW046396|MDC3	a disintegrin and metallopeptidase domain 23	protein-coding	0.015000	0.497512	
mm_27589.1	chr3	59130519	59130719	-	1	NA	NA	NA	143	NM_001008497	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.020000	0.517413	
mm_99668.1	chr11	105967821	105968021	+	1	NA	NA	NA	-24	NM_001281819	11421	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0.140000	0.741294	
mm_73088.1	chr8	94526716	94526916	+	1	NA	NA	NA	-6212	NM_153507	234577	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0.010000	0.452736	2(GTATTTATAAGC,-,0.00)
mm_137505.1	chr17	27029264	27029464	+	1	NA	NA	NA	105	NM_027544	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.010000	0.597015	
mm_126204.1	chr15	78882040	78882240	+	1	NA	NA	NA	4950	NM_145929	106039	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	0.010000	0.542289	
mm_99234.1	chr11	101063145	101063345	+	1	NA	NA	NA	-6849	NM_013792	27419	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.010000	0.577114	
mm_119844.1	chr14	54437666	54437866	+	1	NA	NA	NA	6168	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.030000	0.522388	
mm_13354.1	chr2	103411589	103411789	+	1	NA	NA	NA	-409	NM_001145813	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.025000	0.547264	
mm_132158.1	chr16	32179715	32179915	+	1	NA	NA	NA	15	NM_001033539	328660	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.010000	0.398010	
mm_137937.1	chr17	32658973	32659173	+	1	NA	NA	NA	-410	NM_001101588	631304	Mm.328950	NM_001101588	ENSMUSG00000090700	Cyp4f40	EG631304	cytochrome P450, family 4, subfamily f, polypeptide 40	protein-coding	0.005000	0.527363	
mm_161739.1	chr17	32621218	32621418	+	1	NA	NA	NA	-1	NM_001100187	677156	Mm.484117	NM_001100187	ENSMUSG00000062464	Cyp4f37	Gm9705	cytochrome P450, family 4, subfamily f, polypeptide 37	protein-coding	0.015000	0.522388	
mm_140176.1	chr17	80762799	80762999	+	1	NA	NA	NA	-34874	NM_001290345	225028	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.005000	0.333333	-34(GTCCATAAAAGG,-,0.00)
mm_68090.1	chr7	101905590	101905790	-	1	NA	NA	NA	-147	NM_025605	66508	Mm.30003	NM_025605	ENSMUSG00000030842	Lamtor1	2400001E08Rik|Pdro|p18	late endosomal/lysosomal adaptor, MAPK and MTOR activator 1	protein-coding	0.050000	0.537313	
mm_60467.1	chr7	44477938	44478138	+	1	NA	NA	NA	-6479	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.487562	
mm_121823.1	chr14	20473225	20473425	-	1	NA	NA	NA	6808	NM_001110794	11750	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	0.010000	0.373134	
mm_48791.1	chr5	148678347	148678547	-	1	NA	NA	NA	-63393	NR_028285	70138	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.025000	0.487562	-33(GTCTTTATAAGC,-,0.00)
mm_125331.1	chr15	38661892	38662092	+	1	NA	NA	NA	88	NM_025494	66335	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.115000	0.691542	
mm_36.1	chr1	6380177	6380377	+	1	NA	NA	NA	20946	NM_001195732	620393	Mm.388992	NM_001195732	ENSMUSG00000087247	Fam150a	EG620393	family with sequence similarity 150, member A	protein-coding	0.010000	0.393035	
mm_78685.1	chr9	40799246	40799446	+	1	NA	NA	NA	-1927	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.015000	0.492537	
mm_137910.1	chr17	32111124	32111324	+	1	NA	NA	NA	-19801	NR_027316	435518	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	ENSMUSG00000002791|Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0.010000	0.532338	
mm_133906.1	chr16	97548703	97548903	+	1	NA	NA	NA	12720	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.005000	0.393035	
mm_153992.1	chr19	50455696	50455896	-	1	NA	NA	NA	222850	NM_001252501	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.005000	0.348259	
mm_95319.1	chr11	46436977	46437177	+	1	NA	NA	NA	116	NM_025426	66213	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	0.120000	0.701493	
mm_164877.1	chr18	58209871	58210071	-	1	NA	NA	NA	-45	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.110000	0.681592	
mm_70096.1	chr7	142660765	142660965	-	1	NA	NA	NA	406	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.115000	0.721393	
mm_2347.1	chr1	92910525	92910725	+	1	NA	NA	NA	64	NR_138577	75995	Mm.46179	NR_138577	ENSMUSG00000097251	5033417F24Rik	6330419D11Rik	RIKEN cDNA 5033417F24 gene	ncRNA	0.100000	0.651741	
mm_144045.1	chr17	90422238	90422438	-	1	NA	NA	NA	33542	NM_001346958	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.000000	0.388060	
mm_96055.1	chr11	59566185	59566385	+	1	NA	NA	NA	5453	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.040000	0.567164	
mm_98218.1	chr11	88047224	88047424	+	1	NA	NA	NA	-49	NM_001078167	110809	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	0.090000	0.621891	51(CTTTTTAGAGCG,+,0.00)
mm_170749.1	chr2	156180113	156180313	-	1	NA	NA	NA	25	NM_001291114	170791	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.105000	0.636816	
mm_79877.1	chr9	65195291	65195491	+	1	NA	NA	NA	-19299	NM_177460	214424	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.010000	0.537313	
mm_126649.1	chr15	84127229	84127429	+	1	NA	NA	NA	-4154	NM_029427	75772	Mm.159565	NM_029427	ENSMUSG00000018868	Pnpla5	4833426H19Rik|GS2L	patatin-like phospholipase domain containing 5	protein-coding	0.015000	0.562189	
mm_134600.1	chr16	20621180	20621380	-	1	NA	NA	NA	-2	NM_028420	73047	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	0.115000	0.751244	
mm_103940.1	chr11	83831995	83832195	-	1	NA	NA	NA	-18774	NM_001291268	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.010000	0.452736	
mm_27306.1	chr3	49757183	49757383	-	1	NA	NA	NA	33	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding	0.040000	0.502488	
mm_32937.1	chr4	119257320	119257520	+	1	NA	NA	NA	1951	NM_001038590	242653	Mm.130701	NM_153105	ENSMUSG00000066058	Cldn19	-	claudin 19	protein-coding	0.020000	0.527363	
mm_57686.1	chr6	128512283	128512483	-	1	NA	NA	NA	14337	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.000000	0.412935	
mm_9392.1	chr1	172218220	172218420	-	1	NA	NA	NA	1575	NM_009813	12372	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.000000	0.557214	
mm_21064.1	chr2	152787534	152787734	-	1	NA	NA	NA	33461	NM_053091	84682	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit IV isoform 2	protein-coding	0.010000	0.477612	
mm_35341.1	chr4	32239240	32239440	-	1	NA	NA	NA	-178095	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.110000	0.676617	
mm_52755.1	chr6	120773495	120773695	+	1	NA	NA	NA	-173	NM_001081048	71803	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	0.010000	0.467662	
mm_6334.1	chr1	71627255	71627455	-	1	NA	NA	NA	25879	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.030000	0.492537	
mm_24425.1	chr3	90537198	90537398	+	1	NA	NA	NA	-3925	NM_026416	67860	Mm.331185	NM_026416	ENSMUSG00000074457	S100a16	2300002L21Rik|AI325039|AI663996|DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding	0.010000	0.626866	
mm_29705.1	chr3	123385570	123385770	-	1	NA	NA	NA	320	NM_201638	210529	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	0.055000	0.452736	
mm_37617.1	chr4	126968748	126968948	-	1	NA	NA	NA	-925	NM_001114399	67785	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0.010000	0.398010	
mm_96361.1	chr11	67091981	67092181	+	1	NA	NA	NA	-7723	NR_105888	102466766		NR_105888	ENSMUSG00000098855	Mir6923	Gm27312|mmu-mir-6923	microRNA 6923	ncRNA	0.020000	0.477612	
mm_87927.1	chr10	62598673	62598873	+	1	NA	NA	NA	3525	NM_019553	56200	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0.015000	0.477612	
mm_93276.1	chr10	95842835	95843035	-	1	NA	NA	NA	-97728	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.030000	0.467662	
mm_120087.1	chr14	57798604	57798804	+	1	NA	NA	NA	280	NR_037238	100526476		NR_037238	ENSMUSG00000092784	Mir3077	mir-3077|mmu-mir-3077	microRNA 3077	ncRNA	0.125000	0.666667	
mm_99802.1	chr11	107793772	107793972	+	1	NA	NA	NA	592	NM_019431	54377	Mm.103724	NM_019431	ENSMUSG00000020723	Cacng4	AI413107|AW491861	calcium channel, voltage-dependent, gamma subunit 4	protein-coding	0.095000	0.721393	
mm_107395.1	chr12	33315330	33315530	+	1	NA	NA	NA	12915	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.035000	0.537313	
mm_48788.1	chr5	148652507	148652707	-	1	NA	NA	NA	-89233	NR_028285	70138	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.015000	0.552239	-34(CTCCTTAAAAAC,-,0.00),-32(CCTTAAAAACGC,+,0.00)
mm_154062.1	chr19	55194982	55195182	-	1	NA	NA	NA	2404	NR_106146	102465990		NR_106146	ENSMUSG00000098289	Mir6715	Gm27474|mmu-mir-6715	microRNA 6715	ncRNA	0.000000	0.407960	
mm_19801.1	chr2	110305509	110305709	-	1	NA	NA	NA	116	NM_130452	170442	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	0.005000	0.482587	
mm_49631.1	chr6	30804783	30804983	+	1	NA	NA	NA	63584	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.567164	
mm_94296.1	chr11	4077024	4077224	+	1	NA	NA	NA	12271	NM_001029937	380683	Mm.296806	NM_001029937	ENSMUSG00000054986	Sec14l3	1110069O07Rik	SEC14-like lipid binding 3	protein-coding	0.010000	0.417910	
mm_137073.1	chr17	20961554	20961754	+	1	NA	NA	NA	16200	NM_016891	51792	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	0.015000	0.507463	
mm_82704.1	chr9	22468239	22468439	-	1	NA	NA	NA	17	NM_018739	55934	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	0.110000	0.761194	
mm_33583.1	chr4	132544566	132544766	+	1	NA	NA	NA	9107	NM_172400	68598	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	0.005000	0.422886	
mm_53415.1	chr6	133106260	133106460	+	1	NA	NA	NA	1121	NR_073368	381820	Mm.291762	NM_001163445	ENSMUSG00000072704	Smim10l1	2700089E24Rik|AI662692	small integral membrane protein 10 like 1	protein-coding	0.010000	0.338308	
mm_1541.1	chr1	72852002	72852202	+	1	NA	NA	NA	22763	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.045000	0.621891	
mm_160913.1	chr11	83040050	83040250	-	1	NA	NA	NA	-108	NR_073523	237887	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	pseudo	0.050000	0.522388	-61(TAGTTTATAAGC,-,0.00)
mm_62799.1	chr7	112816028	112816228	+	1	NA	NA	NA	56744	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.010000	0.388060	
mm_95164.1	chr11	40355289	40355489	+	1	NA	NA	NA	337293	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.005000	0.378109	
mm_21434.1	chr2	158383110	158383310	-	1	NA	NA	NA	7572	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.010000	0.388060	
mm_171944.1	chr5	72047319	72047519	+	1	NA	NA	NA	120764	NM_178599	27784	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.020000	0.442786	
mm_103292.1	chr11	72411627	72411827	-	1	NA	NA	NA	-14	NM_177776	276829	Mm.46732	NM_177776	ENSMUSG00000045667	Smtnl2	D130058I21Rik	smoothelin-like 2	protein-coding	0.105000	0.751244	
mm_111438.1	chr12	93444760	93444960	-	1	NA	NA	NA	-37	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0.005000	0.427861	
mm_67653.1	chr7	84689811	84690011	-	1	NA	NA	NA	271	NR_038175	72495	Mm.382914	NR_038175	ENSMUSG00000085236	2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA	0.130000	0.701493	
mm_16368.1	chr2	177074177	177074377	+	1	NA	NA	NA	-146464	NM_001305133	102639598	Mm.379980	NM_029813	ENSMUSG00000074527	Gm14296	-	predicted gene 14296	protein-coding	0.015000	0.497512	
mm_70995.1	chr8	27471479	27471679	+	1	NA	NA	NA	23909	NM_027618	70952	Mm.158160	NM_026256	ENSMUSG00000063932	Poteg	4921537P18Rik|4930456F22Rik|Gsarp1|Gsarp2	POTE ankyrin domain family, member G	protein-coding	0.050000	0.462687	
mm_100005.1	chr11	114851741	114851941	+	1	NA	NA	NA	-189	NM_147217	70355	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.110000	0.631841	
mm_108391.1	chr12	80948512	80948712	+	1	NA	NA	NA	3113	NM_001347415	20384	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0.030000	0.437811	
mm_115533.1	chr13	6595805	6596005	-	1	NA	NA	NA	47748	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.005000	0.447761	
mm_13974.1	chr2	121436260	121436460	+	1	NA	NA	NA	6241	NM_145973	269344	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	0.000000	0.368159	
mm_93876.1	chr10	124545164	124545364	-	1	NA	NA	NA	76190	NR_028310	75030	Mm.159403	NR_028310		4930503E24Rik	-	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	0.010000	0.378109	-58(CCTTATAGGCCT,+,0.00),-39(CTTTAAATACCC,+,0.00)
mm_8451.1	chr1	152902975	152903175	-	1	NA	NA	NA	-429	NM_001005507	226517	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.090000	0.646766	
mm_52972.1	chr6	123237009	123237209	+	1	NA	NA	NA	7266	NM_001190321	56620	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	0.000000	0.343284	
mm_133026.1	chr16	57126399	57126599	+	1	NA	NA	NA	4785	NM_138599	28185	Mm.196933	NM_138599	ENSMUSG00000022752	Tomm70a	2610044B22Rik|D16Ium22|D16Ium22e|D16Wsu109e|Tom70|Tomm70|mKIAA0719	translocase of outer mitochondrial membrane 70 homolog A (yeast)	protein-coding	0.010000	0.442786	
mm_92459.1	chr10	77902398	77902598	-	1	NA	NA	NA	38	NM_145152	237387	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.095000	0.741294	
mm_150660.1	chr19	41981376	41981576	+	1	NA	NA	NA	-287	NM_145500	226122	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0.115000	0.746269	
mm_40938.1	chr5	76677152	76677352	+	1	NA	NA	NA	85538	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.025000	0.562189	
mm_110277.1	chr12	32058268	32058468	-	1	NA	NA	NA	2911	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.000000	0.402985	
mm_43035.1	chr5	123974321	123974521	+	1	NA	NA	NA	793	NM_145070	29816	Mm.149954	NM_145070	ENSMUSG00000000915	Hip1r	AA410023|mKIAA0655	huntingtin interacting protein 1 related	protein-coding	0.020000	0.447761	29(CCTTAAAAATCC,+,0.00)
mm_59525.1	chr7	27617991	27618191	+	1	NA	NA	NA	10755	NM_001331109	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.005000	0.467662	-53(TCCTTGAAAAGC,-,0.00),36(GCATATAAAAAG,-,0.00)
mm_57435.1	chr6	124915494	124915694	-	1	NA	NA	NA	2352	NM_026988	69202	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	0.060000	0.611940	
mm_52846.1	chr6	121838577	121838777	+	1	NA	NA	NA	136	NM_008645	17836	Mm.1311	NM_008645	ENSMUSG00000059908	Mug1	-	murinoglobulin 1	protein-coding	0.025000	0.467662	
mm_15022.1	chr2	152685218	152685418	+	1	NA	NA	NA	-1830	NM_025543	66405	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	0.005000	0.482587	
mm_164048.1	chr14	99697683	99697883	+	1	NA	NA	NA	399092	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.010000	0.412935	
mm_79870.1	chr9	65101391	65101591	+	1	NA	NA	NA	5	NM_020043	56741	Mm.209041	NM_020043	ENSMUSG00000032816	Igdcc4	DDM36|Nope	immunoglobulin superfamily, DCC subclass, member 4	protein-coding	0.175000	0.860697	
mm_21951.1	chr2	167087672	167087872	-	1	NA	NA	NA	22479	NR_028540	100217443		NR_028540		Snord12	MBII-99	small nucleolar RNA, C/D box 12	snoRNA	0.010000	0.487562	
mm_35976.1	chr4	53410794	53410994	-	1	NA	NA	NA	-29519	NM_001159633	100434	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.015000	0.412935	
mm_34210.1	chr4	140961207	140961407	+	1	NA	NA	NA	36	NM_023374	67680	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.090000	0.661692	
mm_117668.1	chr13	93623507	93623707	-	1	NA	NA	NA	14151	NM_016668	12116	Mm.329582	NM_016668	ENSMUSG00000074768	Bhmt	-	betaine-homocysteine methyltransferase	protein-coding	0.010000	0.462687	
mm_71984.1	chr8	70610609	70610809	+	1	NA	NA	NA	-2395	NM_133772	76900	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	0.035000	0.502488	
mm_167320.1	chr8	67050654	67050854	+	1	NA	NA	NA	190537	NM_001163564	234344	Mm.334561	NM_001163564	ENSMUSG00000014907	Naf1	Gm174	nuclear assembly factor 1 ribonucleoprotein	protein-coding	0.000000	0.348259	
mm_142841.1	chr17	51795539	51795739	-	1	NA	NA	NA	16415	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.000000	0.268657	
mm_148011.1	chr18	68268530	68268730	-	1	NA	NA	NA	-7657	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0.010000	0.328358	
mm_47795.1	chr5	132446747	132446947	-	1	NA	NA	NA	95496	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.000000	0.303483	54(TGGTATTAAAAG,-,0.00)
mm_94425.1	chr11	6242262	6242462	+	1	NA	NA	NA	-12117	NM_207242	237636	Mm.212492	NM_207242	ENSMUSG00000020447	Npc1l1	9130221N23Rik|Gm243	NPC1-like 1	protein-coding	0.020000	0.417910	-61(AGCTTTAAAAAA,-,0.00)
mm_165880.1	chr4	41316632	41316832	-	1	NA	NA	NA	-1831	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.015000	0.522388	
mm_40630.1	chr5	64822133	64822333	+	1	NA	NA	NA	18710	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.060000	0.611940	
mm_117789.1	chr13	97035205	97035405	-	1	NA	NA	NA	-51	NR_104276	66479	Mm.390629	NM_025585	ENSMUSG00000052075	1700029F12Rik	-	RIKEN cDNA 1700029F12 gene	protein-coding	0.005000	0.447761	-1(CACTCTTAAAGG,-,0.00),2(TCTTAAAGGGGC,+,0.00)
mm_90740.1	chr10	5367647	5367847	-	1	NA	NA	NA	120567	NM_001347711	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.025000	0.457711	
mm_142187.1	chr17	36889570	36889770	-	1	NA	NA	NA	455	NM_001033235	195359	Mm.32606	NM_001033235	ENSMUSG00000073399	Trim40	Gm319|Gm35|Gm865	tripartite motif-containing 40	protein-coding	0.000000	0.482587	-6(CACCTTAAGAGG,-,0.00)
mm_142769.1	chr17	49549932	49550132	-	1	NA	NA	NA	14305	NM_001008231	76441	Mm.211275	NM_001008231	ENSMUSG00000040260	Daam2	2310016D11Rik|AI843643|AW557870	dishevelled associated activator of morphogenesis 2	protein-coding	0.010000	0.537313	
mm_87837.1	chr10	60380552	60380752	+	1	NA	NA	NA	-19074	NM_001164374	100302688	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.050000	0.527363	
mm_1651.1	chr1	74661652	74661852	+	1	NA	NA	NA	-2	NM_001014974	67534	Mm.260714	NM_001014974	ENSMUSG00000033257	Ttll4	4632407P03Rik|AI451681|mKIAA0173	tubulin tyrosine ligase-like family, member 4	protein-coding	0.100000	0.691542	
mm_139400.1	chr17	52307612	52307812	+	1	NA	NA	NA	-294997	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.000000	0.437811	
mm_62652.1	chr7	107693043	107693243	+	1	NA	NA	NA	64889	NM_001205227	320635	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	0.010000	0.427861	
mm_128344.1	chr15	39780540	39780740	-	1	NA	NA	NA	-16405	NR_045788	100503072	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	OTTMUSG00000033244	predicted gene 16291	ncRNA	0.000000	0.457711	-29(CTGTATAAAAAG,-,0.00)
mm_105784.1	chr11	109797278	109797478	-	1	NA	NA	NA	30668	NM_027038	69324	Mm.31700	NM_027038	ENSMUSG00000020617	1700012B07Rik	1700069D21Rik	RIKEN cDNA 1700012B07 gene	protein-coding	0.035000	0.477612	
mm_24977.1	chr3	96829331	96829531	+	1	NA	NA	NA	-80	NM_001163496	54215	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	0.020000	0.567164	
mm_160360.1	chr8	21839746	21839946	+	1	NA	NA	NA	-80	NM_010030	13215	Mm.41981	NM_010030	ENSMUSG00000006570	Defb2	BD-2	defensin beta 2	protein-coding	0.005000	0.492537	
mm_157265.1	chrX	19202497	19202697	-	1	NA	NA	NA	-55626	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.005000	0.338308	-14(CTATATAAAAGG,-,0.00)
mm_73423.1	chr8	106111448	106111648	+	1	NA	NA	NA	-23852	NR_040345	69771	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.005000	0.427861	-1(CACTCTATAAAG,-,0.00),1(CTCTATAAAGAG,+,0.00),1(CTCTATAAAGAG,-,0.00)
mm_71386.1	chr8	45999221	45999421	+	1	NA	NA	NA	529	NM_001039562	654824	Mm.334517	NM_001039562	ENSMUSG00000050914	Ankrd37	-	ankyrin repeat domain 37	protein-coding	0.030000	0.547264	
mm_111150.1	chr12	82478366	82478566	-	1	NA	NA	NA	-138459	NM_001310478	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0.020000	0.512438	
mm_92947.1	chr10	85102459	85102659	-	1	NA	NA	NA	-64	NM_010214	14202	Mm.46163	NM_010214	ENSMUSG00000050035	Fhl4	-	four and a half LIM domains 4	protein-coding	0.140000	0.771144	
mm_120458.1	chr14	65970502	65970702	+	1	NA	NA	NA	2119	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.020000	0.532338	-20(GCCTATTAATGA,-,0.00)
mm_25094.1	chr3	100924837	100925037	+	1	NA	NA	NA	2444	NM_001165953	229644	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	0.010000	0.492537	
mm_65503.1	chr7	25725932	25726132	-	1	NA	NA	NA	-6979	NM_028771	52132	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.080000	0.676617	
mm_143273.1	chr17	65654217	65654417	-	1	NA	NA	NA	-12113	NM_001146002	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.020000	0.552239	
mm_121719.1	chr14	16490989	16491189	-	1	NA	NA	NA	84387	NM_011243	218772	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	0.005000	0.432836	
mm_162256.1	chrX	168795148	168795348	+	1	NA	NA	NA	149	NM_009707	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.050000	0.641791	
mm_93747.1	chr10	120160003	120160203	-	1	NA	NA	NA	41434	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.035000	0.527363	
mm_76970.1	chr8	106280967	106281167	-	1	NA	NA	NA	-1162	NR_126091	75044	Mm.445896	NR_126090		4930506A18Rik	-	RIKEN cDNA 4930506A18 gene	ncRNA	0.020000	0.567164	
mm_35173.1	chr4	14826502	14826702	-	1	NA	NA	NA	-15	NM_152812	72201	Mm.387724	NM_152812	ENSMUSG00000040550	Otud6b	2600013N14Rik|AU015433	OTU domain containing 6B	protein-coding	0.135000	0.681592	
mm_149177.1	chr19	9216242	9216442	+	1	NA	NA	NA	-80776	NM_025610	66514	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	0.060000	0.457711	
mm_76492.1	chr8	85840817	85841017	-	1	NA	NA	NA	32	NM_028007	71927	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	0.110000	0.721393	
mm_107673.1	chr12	54135047	54135247	+	1	NA	NA	NA	68727	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	0.020000	0.472637	
mm_98904.1	chr11	98026620	98026820	+	1	NA	NA	NA	10	NM_001159483	19921	Mm.10247	NM_009078	ENSMUSG00000017404	Rpl19	-	ribosomal protein L19	protein-coding	0.085000	0.567164	
mm_80285.1	chr9	73044797	73044997	+	1	NA	NA	NA	87	NM_001301230	11891	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	0.080000	0.621891	
mm_27421.1	chr3	51517839	51518039	-	1	NA	NA	NA	33973	NM_016858	19338	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.015000	0.412935	
mm_60602.1	chr7	44554008	44554208	+	1	NA	NA	NA	-143	NM_001285517	22260	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0.045000	0.452736	
mm_34033.1	chr4	138126404	138126604	+	1	NA	NA	NA	12014	NR_126429	73563	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	0.040000	0.572139	
mm_86764.1	chr10	19933593	19933793	+	1	NA	NA	NA	-833	NM_008580	26408	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.120000	0.686567	
mm_44376.1	chr5	17814665	17814865	-	1	NA	NA	NA	21131	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.010000	0.457711	
mm_63518.1	chr7	127876863	127877063	+	1	NA	NA	NA	-140	NM_146259	244219	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.040000	0.577114	
mm_142192.1	chr17	36951321	36951521	-	1	NA	NA	NA	371	NM_029632	76497	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	0.045000	0.577114	19(GTCTATTTAGGG,-,0.00)
mm_137410.1	chr17	26113592	26113792	+	1	NA	NA	NA	376	NM_021793	60455	Mm.304656	NM_021793	ENSMUSG00000024180	Tmem8	AW490096|M83|Tmem8a	transmembrane protein 8 (five membrane-spanning domains)	protein-coding	0.120000	0.691542	
mm_35358.1	chr4	32343723	32343923	-	1	NA	NA	NA	-73612	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.025000	0.542289	38(GCATCTAAAAGG,-,0.00)
mm_26929.1	chr3	20262005	20262205	-	1	NA	NA	NA	13628	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.005000	0.318408	
mm_88724.1	chr10	80172848	80173048	+	1	NA	NA	NA	4	NM_027207	69770	Mm.302754	NM_027207	ENSMUSG00000035595	1600002K03Rik	-	RIKEN cDNA 1600002K03 gene	protein-coding	0.045000	0.601990	
mm_23870.1	chr3	83028987	83029187	+	1	NA	NA	NA	2934	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.010000	0.442786	
mm_157226.1	chrX	13846535	13846735	-	1	NA	NA	NA	-79	NM_009806	12361	Mm.327591	NM_009806	ENSMUSG00000031012	Cask	DXPri1|DXRib1|LIN-2|Pals3|mLin-2	calcium/calmodulin-dependent serine protein kinase (MAGUK family)	protein-coding	0.105000	0.741294	
mm_104320.1	chr11	93955781	93955981	-	1	NA	NA	NA	-98	NM_001077529	18103	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	0.100000	0.666667	
mm_101707.1	chr11	42000465	42000665	-	1	NA	NA	NA	149	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding	0.020000	0.462687	
mm_15048.1	chr2	152867153	152867353	+	1	NA	NA	NA	2186	NR_049195	100885834		NR_049195	ENSMUSG00000093746	Mir5622	Gm24421|mmu-mir-5622	microRNA 5622	ncRNA	0.010000	0.393035	
mm_105822.1	chr11	112825017	112825217	-	1	NA	NA	NA	11	NR_130164	76393	Mm.86795	NR_130164		1700012H19Rik	-	RIKEN cDNA 1700012H19 gene	ncRNA	0.005000	0.452736	
mm_95333.1	chr11	46752310	46752510	+	1	NA	NA	NA	1242	NM_134248	171283	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	0.025000	0.467662	
mm_56141.1	chr6	87790166	87790366	-	1	NA	NA	NA	12130	NM_018762	54368	Mm.12897	NM_018762	ENSMUSG00000030054	Gp9	Cd42|GPIX	glycoprotein 9 (platelet)	protein-coding	0.015000	0.447761	
mm_161784.1	chr17	43952671	43952871	+	1	NA	NA	NA	-228	NM_001286654	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.015000	0.492537	
mm_73282.1	chr8	104831505	104831705	+	1	NA	NA	NA	-39	NM_198171	234669	Mm.443387	NM_198171	ENSMUSG00000050097	Ces2b	-	carboxyesterase 2B	protein-coding	0.020000	0.487562	
mm_114508.1	chr13	71104466	71104666	+	1	NA	NA	NA	-2523	NR_130325	100316804		NR_130325	ENSMUSG00000080580	Mir466f-4	Mirn466f-4|mmu-mir-466f-4	microRNA 466f-4	ncRNA	0.015000	0.472637	
mm_123552.1	chr14	66834423	66834623	-	1	NA	NA	NA	34077	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.025000	0.542289	
mm_5972.1	chr1	57396595	57396795	-	1	NA	NA	NA	-9853	NM_001081181	68115	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	0.005000	0.338308	
mm_164796.1	chr18	20669872	20670072	+	1	NA	NA	NA	4722	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.035000	0.497512	
mm_23388.1	chr3	57362147	57362347	+	1	NA	NA	NA	-60328	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	0.030000	0.472637	
mm_164011.1	chr14	70289309	70289509	-	1	NA	NA	NA	88	NM_008915	19057	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	0.190000	0.791045	
mm_4282.1	chr1	171634789	171634989	+	1	NA	NA	NA	7011	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.015000	0.432836	
mm_171216.1	chr3	59344099	59344299	-	1	NA	NA	NA	57	NM_001162884	242050	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.025000	0.552239	
mm_112897.1	chr13	20886422	20886622	+	1	NA	NA	NA	92409	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.482587	
mm_66290.1	chr7	38008920	38009120	-	1	NA	NA	NA	10532	NM_011274	19777	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	0.000000	0.328358	
mm_94872.1	chr11	24080585	24080785	+	1	NA	NA	NA	-10	NM_001159290	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.120000	0.736318	
mm_122712.1	chr14	52244387	52244587	-	1	NA	NA	NA	-6915	NM_201637	67772	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	0.060000	0.582090	
mm_72165.1	chr8	72240017	72240217	+	1	NA	NA	NA	99	NM_007456	11767	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	0.120000	0.676617	
mm_125099.1	chr15	27636379	27636579	+	1	NA	NA	NA	-5786	NM_001013792	432940	Mm.309164	NM_001013792	ENSMUSG00000046034	Otulin	C79097|Fam105b|m3Sapc|m7-1Sapc	OTU deubiquitinase with linear linkage specificity	protein-coding	0.015000	0.393035	-67(ACCTTTTAAAAG,-,0.00),-66(CCTTTTAAAAGT,+,0.00)
mm_153413.1	chr19	40588334	40588534	-	1	NA	NA	NA	29	NM_019698	56454	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	0.135000	0.681592	
mm_151410.1	chr19	56582756	56582956	+	1	NA	NA	NA	34595	NM_025811	66866	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.005000	0.442786	
mm_60027.1	chr7	30957199	30957399	+	1	NA	NA	NA	-496	NM_011680	22282	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0.145000	0.701493	
mm_142801.1	chr17	50300261	50300461	-	1	NA	NA	NA	-6741	NM_001277863	13164	Mm.280641	NM_010021	ENSMUSG00000010592	Dazl	Daz-like|Dazh|Dazl1|Dazla|Tpx-2|Tpx2	deleted in azoospermia-like	protein-coding	0.025000	0.492537	-35(CCCTATAAAACC,+,0.00)
mm_64996.1	chr7	16923864	16924064	-	1	NA	NA	NA	68	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.180000	0.791045	
mm_26168.1	chr3	138282671	138282871	+	1	NA	NA	NA	5126	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.025000	0.522388	
mm_75261.1	chr8	40596113	40596313	-	1	NA	NA	NA	38579	NM_001040699	54384	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.000000	0.383085	
mm_136117.1	chr16	85803014	85803214	-	1	NA	NA	NA	-1	NM_009621	11504	Mm.1421	NM_009621	ENSMUSG00000022893	Adamts1	ADAM-TS1|ADAMTS|ADAMTS-1|C3-C5|METH-1|METH1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1	protein-coding	0.070000	0.626866	-34(GGCTATAAAGGG,-,0.00)
mm_14444.1	chr2	130933038	130933238	+	1	NA	NA	NA	26643	NM_009730	11990	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	0.035000	0.512438	
mm_94895.1	chr11	29130645	29130845	+	1	NA	NA	NA	-6	NM_027869	71701	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	0.090000	0.696517	
mm_137704.1	chr17	29098486	29098686	+	1	NA	NA	NA	4817	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.090000	0.661692	
mm_80231.1	chr9	72669969	72670169	+	1	NA	NA	NA	7722	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.035000	0.467662	
mm_60975.1	chr7	48881765	48881965	+	1	NA	NA	NA	-824	NM_001013368	108961	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.025000	0.442786	
mm_152834.1	chr19	23273738	23273938	-	1	NA	NA	NA	59	NM_153808	226026	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	0.120000	0.736318	
mm_28857.1	chr3	96925962	96926162	-	1	NA	NA	NA	-11	NM_008123	14616	Mm.258183	NM_008123	ENSMUSG00000049908	Gja8	Aey5|Cnx50|Cx50|Lop10	gap junction protein, alpha 8	protein-coding	0.010000	0.522388	-34(CTTCATAAAAGC,-,0.00)
mm_63083.1	chr7	122288650	122288850	+	1	NA	NA	NA	-375	NM_001316672	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.025000	0.572139	
mm_150016.1	chr19	29368748	29368948	+	1	NA	NA	NA	1410	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.000000	0.452736	65(GCTTTAAAGCAG,+,0.00)
mm_20184.1	chr2	122600312	122600512	-	1	NA	NA	NA	10865	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.015000	0.467662	-63(CTCTTTTAAAGA,-,0.00),-62(TCTTTTAAAGAC,+,0.00)
mm_59187.1	chr7	24474198	24474398	+	1	NA	NA	NA	-7725	NM_153112	260299	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	0.020000	0.547264	
mm_94725.1	chr11	20647137	20647337	+	1	NA	NA	NA	15260	NM_001038625	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.020000	0.517413	
mm_134689.1	chr16	22469172	22469372	-	1	NA	NA	NA	-29702	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.005000	0.422886	
mm_51372.1	chr6	72899985	72900185	+	1	NA	NA	NA	-106	NM_019715	74287	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0.160000	0.820896	
mm_91926.1	chr10	60351761	60351961	-	1	NA	NA	NA	5010	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.010000	0.547264	16(CCTTTACTAGCC,+,0.00)
mm_158908.1	chr1	38939079	38939279	+	1	NA	NA	NA	30	NM_001011684	433292	Mm.333709	NM_001011684	ENSMUSG00000067604	Nms	AB164466	neuromedin S	protein-coding	0.020000	0.542289	
mm_6635.1	chr1	78658200	78658400	-	1	NA	NA	NA	-140	NM_001136226	195434	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0.130000	0.756219	
mm_18841.1	chr2	75133661	75133861	-	1	NA	NA	NA	307949	NM_016804	53375	Mm.292613	NM_016804	ENSMUSG00000027099	Mtx2	1500012G02Rik	metaxin 2	protein-coding	0.010000	0.452736	
mm_140894.1	chr17	24032236	24032436	-	1	NA	NA	NA	-5907	NM_175440	213171	Mm.133083	NM_175440	ENSMUSG00000050762	Prss27	CAPH2|Mpn|marapsin	protease, serine 27	protein-coding	0.030000	0.621891	
mm_31561.1	chr4	57567613	57567813	+	1	NA	NA	NA	-535	NM_001304544	677884	Mm.331630	NM_001304544	ENSMUSG00000089945	Pakap	AF064781|Gm20459|Palm2-Akap2|Palm2Akap2|Palm2akap2	paralemmin A kinase anchor protein	protein-coding	0.030000	0.562189	
mm_88813.1	chr10	80797971	80798171	+	1	NA	NA	NA	555	NM_023900	78670	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.095000	0.691542	
mm_17781.1	chr2	32961507	32961707	-	1	NA	NA	NA	-105	NM_009076	269261	Mm.250030	NM_009076	ENSMUSG00000038900	Rpl12	E430018F03	ribosomal protein L12	protein-coding	0.070000	0.631841	
mm_2380.1	chr1	93373787	93373987	+	1	NA	NA	NA	-9	NM_207031	404545	Mm.297411	NM_207031	ENSMUSG00000034107	Ano7	Ngep|Ngep-L|Pcanap5|Tmem16g	anoctamin 7	protein-coding	0.005000	0.582090	
mm_164263.1	chr15	100675451	100675651	-	1	NA	NA	NA	-6051	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.005000	0.557214	
mm_102016.1	chr11	51635653	51635853	-	1	NA	NA	NA	143	NM_025346	66089	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	0.120000	0.726368	
mm_131022.1	chr15	103588297	103588497	-	1	NA	NA	NA	-23316	NM_008134	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.010000	0.288557	
mm_98617.1	chr11	95843568	95843768	+	1	NA	NA	NA	423	NM_001284397	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.020000	0.562189	
mm_130179.1	chr15	93398203	93398403	-	1	NA	NA	NA	-13	NM_026025	67197	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	0.185000	0.756219	-64(CGCCCTAAAGGC,-,0.00)
mm_68706.1	chr7	119793851	119794051	-	1	NA	NA	NA	107	NM_027698	71151	Mm.274160	NM_027698	ENSMUSG00000030929	Eri2	4933424N09Rik|Exod1|mKIAA1504	exoribonuclease 2	protein-coding	0.110000	0.636816	
mm_39143.1	chr4	155345545	155345745	-	1	NA	NA	NA	144	NM_001039079	18762	Mm.28561	NM_008860	ENSMUSG00000029053	Prkcz	AI098070|C80388|Pkcz|R74924|aPKCzeta|nPKC-zeta|zetaPKC	protein kinase C, zeta	protein-coding	0.045000	0.641791	
mm_51738.1	chr6	87183388	87183588	+	1	NA	NA	NA	78742	NM_001167937	52372	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0.025000	0.487562	-34(GACTATAAAATG,-,0.00)
mm_2283.1	chr1	91322023	91322223	+	1	NA	NA	NA	48	NM_001033292	227357	Mm.318167	NM_001033292	ENSMUSG00000049515	Espnl	Gm556	espin-like	protein-coding	0.035000	0.597015	68(GGCTATTTGAGG,-,0.00)
mm_88992.1	chr10	81565770	81565970	+	1	NA	NA	NA	6426	NM_001276288	14797	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.020000	0.601990	
mm_155701.1	chrX	94789581	94789781	+	1	NA	NA	NA	8608	NR_003292	668171	Mm.426134	NR_003292		Zxda	4933406P09Rik|AW413531	zinc finger, X-linked, duplicated A	pseudo	0.010000	0.452736	
mm_67856.1	chr7	98931101	98931301	-	1	NA	NA	NA	92356	NM_001285795	22411	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.005000	0.417910	
mm_164977.1	chr19	8838935	8839135	-	1	NA	NA	NA	211	NM_010316	14704	Mm.329700	NM_010316	ENSMUSG00000071658	Gng3	-	guanine nucleotide binding protein (G protein), gamma 3	protein-coding	0.010000	0.547264	
mm_171475.1	chr4	145781591	145781791	+	1	NA	NA	NA	148	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.025000	0.552239	11(CCTTTTCTGCCG,+,0.00)
mm_165172.1	chr2	26933533	26933733	+	1	NA	NA	NA	-122	NM_011512	20932	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	0.085000	0.716418	
mm_158054.1	chrX	100625828	100626028	-	1	NA	NA	NA	-21	NM_028303	72621	Mm.291607	NM_028303	ENSMUSG00000015668	Pdzd11	1810012H22Rik|2310079D11Rik|2700099C19Rik|AI854765|Pdzk11	PDZ domain containing 11	protein-coding	0.105000	0.656716	
mm_25401.1	chr3	107278704	107278904	+	1	NA	NA	NA	-54	NM_026774	68576	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	0.015000	0.477612	
mm_61927.1	chr7	90163035	90163235	+	1	NA	NA	NA	32903	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.005000	0.303483	
mm_125243.1	chr15	34443233	34443433	+	1	NA	NA	NA	-57	NM_001163485	19946	Mm.358632	NM_009083	ENSMUSG00000058600	Rpl30	-	ribosomal protein L30	protein-coding	0.075000	0.606965	
mm_172511.1	chr7	72649241	72649441	-	1	NA	NA	NA	-342746	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.015000	0.432836	
mm_153310.1	chr19	38030549	38030749	-	1	NA	NA	NA	12928	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.000000	0.417910	
mm_112144.1	chr12	113155096	113155296	-	1	NA	NA	NA	-1225	NM_134041	104732	Mm.87616	NM_134041	ENSMUSG00000037466	4930427A07Rik	AA536649|mFLJ00116	RIKEN cDNA 4930427A07 gene	protein-coding	0.035000	0.597015	
mm_88735.1	chr10	80253602	80253802	+	1	NA	NA	NA	4250	NM_029272	75406	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0.030000	0.606965	
mm_45963.1	chr5	90464835	90465035	-	1	NA	NA	NA	4065	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.005000	0.452736	
mm_101449.1	chr11	30197988	30198188	-	1	NA	NA	NA	169	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.015000	0.502488	
mm_132253.1	chr16	32751596	32751796	+	1	NA	NA	NA	15810	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.005000	0.462687	
mm_29159.1	chr3	106032829	106033029	-	1	NA	NA	NA	-34	NM_001080816	229687	Mm.39224	NM_170594	ENSMUSG00000043873	Chil5	Bclp|Bclp1|Bclp2|Chi3l7	chitinase-like 5	protein-coding	0.005000	0.393035	68(TTTTAAAAAGCC,+,0.00)
mm_147551.1	chr18	54917859	54918059	-	1	NA	NA	NA	72221	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.005000	0.388060	
mm_88145.1	chr10	69533575	69533775	+	1	NA	NA	NA	-33	NM_170729	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.015000	0.527363	
mm_705.1	chr1	40681563	40681763	+	1	NA	NA	NA	-49	NM_001033289	226999	Mm.256414	NM_001033289	ENSMUSG00000026062	Slc9a2	2210416H12Rik|4932415O19Rik|AV333884|NHE2	solute carrier family 9 (sodium/hydrogen exchanger), member 2	protein-coding	0.115000	0.771144	
mm_97829.1	chr11	83064296	83064496	+	1	NA	NA	NA	-716	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.010000	0.457711	
mm_122741.1	chr14	54138174	54138374	-	1	NA	NA	NA	115655	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.398010	
mm_124281.1	chr14	103048315	103048515	-	1	NA	NA	NA	1403	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.010000	0.407960	
mm_18386.1	chr2	60118665	60118865	-	1	NA	NA	NA	6975	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.015000	0.412935	
mm_80971.1	chr9	103111966	103112166	+	1	NA	NA	NA	-8	NM_173781	270192	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.100000	0.766169	
mm_102298.1	chr11	55461072	55461272	-	1	NA	NA	NA	-34	NM_009720	11927	Mm.217759	NM_009720	ENSMUSG00000018585	Atox1	AI256639|Atx1	antioxidant 1 copper chaperone	protein-coding	0.095000	0.681592	
mm_14268.1	chr2	128698814	128699014	+	1	NA	NA	NA	-83	NM_008587	17289	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.090000	0.691542	
mm_68718.1	chr7	120095563	120095763	-	1	NA	NA	NA	-6763	NM_145586	233806	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	0.005000	0.467662	
mm_86618.1	chr10	13965761	13965961	+	1	NA	NA	NA	-518	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.100000	0.721393	
mm_61805.1	chr7	84749962	84750162	+	1	NA	NA	NA	60422	NR_038175	72495	Mm.382914	NR_038175	ENSMUSG00000085236	2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA	0.030000	0.512438	
mm_147439.1	chr18	46524935	46525135	-	1	NA	NA	NA	936	NM_173423	240263	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.055000	0.507463	
mm_101966.1	chr11	50308724	50308924	-	1	NA	NA	NA	-16488	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.005000	0.422886	
mm_159374.1	chr3	89281079	89281279	-	1	NA	NA	NA	-228	NM_001162425	13636	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0.040000	0.587065	
mm_148217.1	chr18	80236702	80236902	-	1	NA	NA	NA	10300	NM_001136181	66255	Mm.272341	NM_001136181	ENSMUSG00000078963	Hsbp1l1	1810005K13Rik	heat shock factor binding protein 1-like 1	protein-coding	0.060000	0.636816	
mm_138775.1	chr17	37195414	37195614	+	1	NA	NA	NA	1622	NM_023137	24108	Mm.140210	NM_023137	ENSMUSG00000035186	Ubd	FAT10	ubiquitin D	protein-coding	0.020000	0.522388	
mm_37168.1	chr4	117178616	117178816	-	1	NA	NA	NA	56	NM_001290662	73804	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.010000	0.482587	
mm_140170.1	chr17	80307305	80307505	+	1	NA	NA	NA	-2	NM_001145452	381112	Mm.360004	NM_001145452	ENSMUSG00000054901	Arhgef33	Gm941	Rho guanine nucleotide exchange factor (GEF) 33	protein-coding	0.005000	0.447761	-33(TCATTTAAAAGC,-,0.00)
mm_94375.1	chr11	5105082	5105282	+	1	NA	NA	NA	5017	NM_001290493	279766	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0.030000	0.606965	
mm_154335.1	chrM	3816	4016	+	1	NA	NA	NA	NA	NA									0.025000	0.412935	
mm_131536.1	chr16	17759483	17759683	+	1	NA	NA	NA	-38	NM_145479	224023	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	0.090000	0.711443	
mm_796.1	chr1	45345948	45346148	+	1	NA	NA	NA	34510	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.025000	0.432836	12(TCTTATAAGCCC,+,0.00)
mm_71515.1	chr8	46846447	46846647	+	1	NA	NA	NA	106802	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.035000	0.527363	
mm_164970.1	chr19	7482883	7483083	-	1	NA	NA	NA	308	NM_001271486	20168	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0.125000	0.746269	
mm_70145.1	chr7	143458713	143458913	-	1	NA	NA	NA	2237	NM_009876	12577	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.025000	0.393035	
mm_19383.1	chr2	91236771	91236971	-	1	NA	NA	NA	195	NM_028119	107986	Mm.389334	NM_028119	ENSMUSG00000002109	Ddb2	2610043A19Rik	damage specific DNA binding protein 2	protein-coding	0.075000	0.557214	
mm_97207.1	chr11	75612609	75612809	+	1	NA	NA	NA	-12478	NR_110477	654359	Mm.439961	NR_110477		Gm12338	OTTMUSG00000006216	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.020000	0.502488	-45(GGGTTTAAAGGC,-,0.00)
mm_24727.1	chr3	95282820	95283020	+	1	NA	NA	NA	-15	NM_133858	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.050000	0.587065	
mm_71830.1	chr8	68896666	68896866	+	1	NA	NA	NA	16211	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.010000	0.487562	
mm_61701.1	chr7	81213205	81213405	+	1	NA	NA	NA	-499	NM_008803	18584	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.160000	0.756219	
mm_167868.1	chrX	33416389	33416589	+	1	NA	NA	NA	103151	NM_001099333	100040606	Mm.460713	NM_001099333	ENSMUSG00000101500	Btbd35f12	Gm2863	BTB domain containing 35, family member 12	protein-coding	0.040000	0.497512	
mm_73872.1	chr8	119061951	119062151	+	1	NA	NA	NA	-282487	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.025000	0.427861	
mm_146915.1	chr18	31582155	31582355	-	1	NA	NA	NA	27647	NM_026165	67453	Mm.23896	NM_026165	ENSMUSG00000024259	Slc25a46	1200007B05Rik|AI325987	solute carrier family 25, member 46	protein-coding	0.015000	0.422886	
mm_165635.1	chr3	69859760	69859960	-	1	NA	NA	NA	34	NM_001164210	66183	Mm.45481	NM_133675	ENSMUSG00000043461	Sptssb	1110032A04Rik|ADMP|Sssptb	serine palmitoyltransferase, small subunit B	protein-coding	0.020000	0.502488	57(CAATCTAAAAGG,-,0.00)
mm_171205.1	chr3	54692746	54692946	+	1	NA	NA	NA	-259	NM_019995	56790	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0.095000	0.671642	
mm_157785.1	chrX	73824344	73824544	-	1	NA	NA	NA	525	NM_001029868	245469	Mm.103782	NM_001029868	ENSMUSG00000002006	Pdzd4	B230341P03|D130075J17Rik|Kiaa1444-hp|LU1|PDZRN4L|Pdzk4|Pdzrnk4l|Xlu	PDZ domain containing 4	protein-coding	0.070000	0.691542	
mm_83375.1	chr9	44526332	44526532	-	1	NA	NA	NA	-11	NM_007551	12145	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	0.020000	0.547264	
mm_31600.1	chr4	57893834	57894034	+	1	NA	NA	NA	22330	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.005000	0.363184	
mm_140615.1	chr17	10840192	10840392	-	1	NA	NA	NA	-67	NM_001317726	50873	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.105000	0.641791	
mm_119695.1	chr14	53621638	53621838	+	1	NA	NA	NA	632191	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.467662	
mm_168069.1	chr10	105238327	105238527	+	1	NA	NA	NA	336052	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.085000	0.572139	-41(AACTTTAAATGG,-,0.00)
mm_71379.1	chr8	45885387	45885587	+	1	NA	NA	NA	2	NM_016798	53318	Mm.282900	NM_016798	ENSMUSG00000031636	Pdlim3	AI463105|ALP|Actn2lp	PDZ and LIM domain 3	protein-coding	0.055000	0.621891	
mm_62640.1	chr7	107664862	107665062	+	1	NA	NA	NA	58118	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.005000	0.567164	
mm_144845.1	chr18	36573483	36573683	+	1	NA	NA	NA	12980	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.000000	0.338308	
mm_67108.1	chr7	70354597	70354797	-	1	NA	NA	NA	5896	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.035000	0.432836	18(GGCCATATATGG,-,0.00),20(CCATATATGGCA,+,0.00)
mm_60841.1	chr7	45742729	45742929	+	1	NA	NA	NA	16726	NM_017465	54200	Mm.271634	NM_017465	ENSMUSG00000003271	Sult2b1	AI326997|BB173635|ST2B1|SULT2B	sulfotransferase family, cytosolic, 2B, member 1	protein-coding	0.020000	0.552239	
mm_22834.1	chr3	27482399	27482599	+	1	NA	NA	NA	102496	NR_037275	100526525		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.015000	0.502488	
mm_5873.1	chr1	53785122	53785322	-	1	NA	NA	NA	-7	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.115000	0.666667	
mm_72421.1	chr8	82084234	82084434	+	1	NA	NA	NA	318252	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.000000	0.393035	
mm_75883.1	chr8	70796906	70797106	-	1	NA	NA	NA	-1129	NR_106099	102466823		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	0.135000	0.726368	
mm_115121.1	chr13	104286948	104287148	+	1	NA	NA	NA	-787	NR_136938	108154	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.050000	0.567164	
mm_120386.1	chr14	64590201	64590401	+	1	NA	NA	NA	-356	NR_029813	387233		NR_029813	ENSMUSG00000065597	Mir124a-1	Mirn124a|Mirn124a-1	microRNA 124a-1	ncRNA	0.055000	0.597015	
mm_134827.1	chr16	26075009	26075209	-	1	NA	NA	NA	30675	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.000000	0.437811	
mm_161582.1	chr16	31754345	31754545	+	1	NA	NA	NA	95	NM_001252436	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.030000	0.447761	
mm_23543.1	chr3	61364423	61364623	+	1	NA	NA	NA	16	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.120000	0.756219	
mm_39453.1	chr5	17574520	17574720	+	1	NA	NA	NA	-196	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.145000	0.791045	
mm_71993.1	chr8	70617713	70617913	+	1	NA	NA	NA	969	NM_153074	211228	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0.010000	0.592040	
mm_113498.1	chr13	37418751	37418951	+	1	NA	NA	NA	73506	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.010000	0.422886	
mm_62081.1	chr7	92932982	92933182	+	1	NA	NA	NA	57829	NM_028243	72461	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.030000	0.452736	
mm_166947.1	chr7	43826808	43827008	+	1	NA	NA	NA	1458	NM_011177	19144	Mm.3944	NM_011177	ENSMUSG00000050063	Klk6	AI849898|BSP|Bssp|Klk29|MSP|Prss18|Prss9|neurosin	kallikrein related-peptidase 6	protein-coding	0.010000	0.552239	61(GTCTTTAAGAAG,-,0.00)
mm_149034.1	chr19	8802746	8802946	+	1	NA	NA	NA	316	NM_001098237	75291	Mm.23423	NM_133759	ENSMUSG00000071661	Zbtb3	4930563M09Rik	zinc finger and BTB domain containing 3	protein-coding	0.020000	0.537313	62(CTCTATTTAAGG,-,0.00),64(CTATTTAAGGGC,+,0.00)
mm_22068.1	chr2	168734161	168734361	-	1	NA	NA	NA	78	NM_001289445	11981	Mm.330819	NM_015731	ENSMUSG00000027546	Atp9a	IIa	ATPase, class II, type 9A	protein-coding	0.035000	0.592040	
mm_72127.1	chr8	71757361	71757561	+	1	NA	NA	NA	-31780	NM_028715	74015	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.000000	0.492537	
mm_62753.1	chr7	112023339	112023539	+	1	NA	NA	NA	-67	NM_133758	74996	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	0.165000	0.751244	
mm_58013.1	chr6	136555490	136555690	-	1	NA	NA	NA	36739	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.020000	0.467662	
mm_893.1	chr1	53296982	53297182	+	1	NA	NA	NA	-13	NM_145517	227102	Mm.212846	NM_145517	ENSMUSG00000026097	Ormdl1	C730042F17Rik	ORM1-like 1 (S. cerevisiae)	protein-coding	0.075000	0.671642	
mm_75037.1	chr8	32477252	32477452	-	1	NA	NA	NA	325457	NR_046039	666589	Mm.367675	NR_046039		Gm8179	EG666589	predicted gene 8179	ncRNA	0.045000	0.532338	
mm_92456.1	chr10	77826995	77827195	-	1	NA	NA	NA	-25	NM_001135991	100191037	Mm.432613	NM_001135991	ENSMUSG00000069582	Krtap10-4	675238|A030009A09Rik|AA589524	keratin associated protein 10-4	protein-coding	0.015000	0.557214	-33(GAGTATAAAGGC,-,0.00)
mm_122069.1	chr14	30573510	30573710	-	1	NA	NA	NA	1461	NR_037237	100526475		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0.005000	0.467662	
mm_15237.1	chr2	154650816	154651016	+	1	NA	NA	NA	-6110	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.000000	0.547264	-33(TGCTATAAAAGG,-,0.00)
mm_116316.1	chr13	37439979	37440179	-	1	NA	NA	NA	94734	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.020000	0.547264	
mm_79381.1	chr9	54765535	54765735	+	1	NA	NA	NA	887	NM_013496	12903	Mm.34797	NM_013496	ENSMUSG00000032291	Crabp1	AI326249|CRABP-I|Crabp-1|CrabpI|Rbp-5	cellular retinoic acid binding protein I	protein-coding	0.060000	0.592040	65(CCCCATTAAAAC,-,0.00),67(CCATTAAAACCC,+,0.00)
mm_113743.1	chr13	44729568	44729768	+	1	NA	NA	NA	-1106	NM_021878	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.050000	0.587065	
mm_103561.1	chr11	77725188	77725388	-	1	NA	NA	NA	5	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.035000	0.532338	-31(GACTATAAAGAG,-,0.00)
mm_140471.1	chr17	93336068	93336268	+	1	NA	NA	NA	137000	NM_009625	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.010000	0.547264	
mm_38355.1	chr4	137796217	137796417	-	1	NA	NA	NA	67	NM_007431	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.115000	0.756219	
mm_7237.1	chr1	93478260	93478460	-	1	NA	NA	NA	557	NM_133808	110611	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0.080000	0.701493	
mm_126945.1	chr15	92051159	92051359	+	1	NA	NA	NA	94	NM_001159648	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.050000	0.656716	
mm_122532.1	chr14	47384609	47384809	-	1	NA	NA	NA	10849	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.020000	0.472637	
mm_163036.1	chr11	53314964	53315164	+	1	NA	NA	NA	-9625	NM_026479	67966	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0.000000	0.427861	74(TCCTCTATAAAC,-,0.00),76(CTCTATAAACCC,+,0.00)
mm_25989.1	chr3	133666242	133666442	+	1	NA	NA	NA	-121952	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.000000	0.437811	28(CTCCATAAAAGA,-,0.00)
mm_50423.1	chr6	48833944	48834144	+	1	NA	NA	NA	6944	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.035000	0.562189	
mm_83155.1	chr9	40457379	40457579	-	1	NA	NA	NA	-1715	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.010000	0.482587	
mm_60463.1	chr7	44477734	44477934	+	1	NA	NA	NA	-6683	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.442786	
mm_110653.1	chr12	59050702	59050902	-	1	NA	NA	NA	10670	NM_001306218	78232	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	0.000000	0.323383	
mm_99174.1	chr11	100849954	100850154	+	1	NA	NA	NA	531	NM_001113563	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.055000	0.601990	
mm_41698.1	chr5	100846186	100846386	+	1	NA	NA	NA	57	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|Gpat3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding	0.095000	0.696517	
mm_139765.1	chr17	64601277	64601477	+	1	NA	NA	NA	-272	NM_008549	17158	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.110000	0.661692	
mm_66475.1	chr7	44997431	44997631	-	1	NA	NA	NA	48	NM_029410	75736	Mm.261006	NM_029410	ENSMUSG00000003190	Bcl2l12	2810475P17Rik|5430429M05Rik|Bcl-L12|Bcl2-L12	BCL2-like 12 (proline rich)	protein-coding	0.080000	0.587065	
mm_152213.1	chr19	7965923	7966123	-	1	NA	NA	NA	4	NM_134256	171405	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	Oat9|mOAT6-L|mOAT6-S	solute carrier family 22, member 27	protein-coding	0.010000	0.457711	
mm_136991.1	chr17	17374520	17374720	+	1	NA	NA	NA	288	NM_025934	67045	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2 (yeast)	protein-coding	0.065000	0.562189	
mm_28721.1	chr3	95674044	95674244	-	1	NA	NA	NA	13773	NM_144899	229595	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.030000	0.626866	
mm_3946.1	chr1	163929941	163930141	+	1	NA	NA	NA	276	NM_028776	240880	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0.130000	0.746269	
mm_25661.1	chr3	121723483	121723683	+	1	NA	NA	NA	46	NM_010171	14066	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0.155000	0.736318	-6(CCCTTTATAACG,+,0.00)
mm_918.1	chr1	55087873	55088073	+	1	NA	NA	NA	-41	NM_010477	15510	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	0.145000	0.781095	
mm_1454.1	chr1	67230620	67230820	+	1	NA	NA	NA	107693	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.308458	
mm_123786.1	chr14	70351222	70351422	-	1	NA	NA	NA	102	NM_144808	213053	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0.095000	0.736318	
mm_137606.1	chr17	28226969	28227169	+	1	NA	NA	NA	-5685	NM_011145	19015	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.020000	0.353234	
mm_74359.1	chr8	128358939	128359139	+	1	NA	NA	NA	-34	NM_008737	18186	Mm.271745	NM_008737	ENSMUSG00000025810	Nrp1	C530029I03|NP-1|NPN-1|Npn1|Nrp	neuropilin 1	protein-coding	0.045000	0.651741	
mm_30339.1	chr3	151733787	151733987	-	1	NA	NA	NA	16072	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.000000	0.273632	
mm_97159.1	chr11	75468073	75468273	+	1	NA	NA	NA	123	NM_027249	380712	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	0.045000	0.641791	
mm_16745.1	chr2	9594038	9594238	-	1	NA	NA	NA	284462	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.030000	0.562189	
mm_127886.1	chr15	8710647	8710847	-	1	NA	NA	NA	60	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.045000	0.482587	
mm_145523.1	chr18	60560663	60560863	+	1	NA	NA	NA	-23	NM_025776	66810	Mm.275106	NM_025776	ENSMUSG00000024604	Rbm22	8430430L24Rik	RNA binding motif protein 22	protein-coding	0.110000	0.656716	
mm_10049.1	chr1	193197891	193198091	-	1	NA	NA	NA	3555	NM_153137	215243	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	0.060000	0.597015	
mm_65871.1	chr7	29505683	29505883	-	1	NA	NA	NA	-323	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.020000	0.597015	
mm_158154.1	chrX	103478045	103478245	-	1	NA	NA	NA	5088	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.005000	0.432836	-14(GGCCATTAAAGG,-,0.00),-12(CCATTAAAGGGG,+,0.00)
mm_124209.1	chr14	99099643	99099843	-	1	NA	NA	NA	27	NM_028315	72662	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	0.130000	0.626866	
mm_156458.1	chrX	142825607	142825807	+	1	NA	NA	NA	86707	NR_030523	723976		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	0.000000	0.437811	
mm_25947.1	chr3	131564770	131564970	+	1	NA	NA	NA	102	NM_011863	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.090000	0.691542	
mm_7494.1	chr1	121346076	121346276	-	1	NA	NA	NA	-13587	NM_178082	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.005000	0.492537	
mm_107014.1	chr12	12262078	12262278	+	1	NA	NA	NA	39	NM_001146119	76820	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.135000	0.776119	
mm_470.1	chr1	36372136	36372336	+	1	NA	NA	NA	-55	NM_001277076	100534273	Mm.389112	NM_001277076	ENSMUSG00000037432	Fer1l5	4930533C12Rik	fer-1-like 5 (C. elegans)	protein-coding	0.025000	0.547264	
mm_32750.1	chr4	116685766	116685966	+	1	NA	NA	NA	156	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.080000	0.601990	
mm_7035.1	chr1	87100235	87100435	-	1	NA	NA	NA	1271	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.000000	0.512438	
mm_27856.1	chr3	79157176	79157376	-	1	NA	NA	NA	-11401	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.383085	
mm_94611.1	chr11	16260496	16260696	+	1	NA	NA	NA	2872	NM_145967	211739	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding	0.015000	0.522388	
mm_124978.1	chr15	20520411	20520611	+	1	NA	NA	NA	146239	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.010000	0.288557	
mm_127280.1	chr15	99902847	99903047	+	1	NA	NA	NA	-27491	NM_001113545	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.025000	0.507463	
mm_68328.1	chr7	106503961	106504161	-	1	NA	NA	NA	-62988	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.343284	
mm_83100.1	chr9	40321367	40321567	-	1	NA	NA	NA	-12005	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.010000	0.582090	
mm_143071.1	chr17	57022385	57022585	-	1	NA	NA	NA	9022	NM_010613	16549	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0.045000	0.577114	
mm_72213.1	chr8	72646553	72646753	+	1	NA	NA	NA	-58	NM_176940	319555	Mm.212927	NM_176940	ENSMUSG00000048148	Nwd1	A230063L24Rik	NACHT and WD repeat domain containing 1	protein-coding	0.020000	0.522388	
mm_72167.1	chr8	72240251	72240451	+	1	NA	NA	NA	333	NM_007456	11767	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	0.060000	0.651741	
mm_75573.1	chr8	60954698	60954898	-	1	NA	NA	NA	1	NM_173876	12725	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0.025000	0.497512	
mm_18332.1	chr2	57297343	57297543	-	1	NA	NA	NA	59061	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.020000	0.507463	
mm_5839.1	chr1	52952715	52952915	-	1	NA	NA	NA	25	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.060000	0.696517	
mm_125672.1	chr15	66445478	66445678	+	1	NA	NA	NA	55332	NM_019457	54562	Mm.244890	NM_019457	ENSMUSG00000022375	Lrrc6	LRTP	leucine rich repeat containing 6 (testis)	protein-coding	0.015000	0.512438	
mm_30241.1	chr3	146495034	146495234	-	1	NA	NA	NA	4619	NM_001316756	70951	Mm.383235	NM_027617	ENSMUSG00000028188	Spata1	4921536I21Rik|AV266943|SP-2	spermatogenesis associated 1	protein-coding	0.030000	0.472637	
mm_114889.1	chr13	94358899	94359099	+	1	NA	NA	NA	39	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.135000	0.751244	
mm_38771.1	chr4	147932679	147932879	-	1	NA	NA	NA	3997	NM_011122	18822	Mm.23951	NM_011122	ENSMUSG00000019055	Plod1	2410042F05Rik|AI854890|AV007929|Lh1|Plod	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1	protein-coding	0.020000	0.532338	
mm_81163.1	chr9	107298532	107298732	+	1	NA	NA	NA	1973	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.020000	0.547264	
mm_64877.1	chr7	14446413	14446613	-	1	NA	NA	NA	74	NM_175250	76971	Mm.290727	NM_175250	ENSMUSG00000030378	Sult2a8	2810007J24Rik	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8	protein-coding	0.015000	0.373134	
mm_52217.1	chr6	103510751	103510951	+	1	NA	NA	NA	-25	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.045000	0.587065	
mm_153517.1	chr19	41665903	41666103	-	1	NA	NA	NA	77352	NR_106166	102465884		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	0.010000	0.487562	
mm_126955.1	chr15	92161373	92161573	+	1	NA	NA	NA	116	NM_001159647	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.015000	0.492537	
mm_40720.1	chr5	65955601	65955801	+	1	NA	NA	NA	-11423	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.025000	0.422886	
mm_94117.1	chr10	128626606	128626806	-	1	NA	NA	NA	-200	NM_013765	27370	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0.035000	0.383085	27(CCATTTCTAGGG,+,0.00)
mm_40216.1	chr5	37090980	37091180	+	1	NA	NA	NA	5844	NM_001347348	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0.025000	0.606965	
mm_53816.1	chr6	147042676	147042876	+	1	NA	NA	NA	6	NM_145573	232536	Mm.46656	NM_145573	ENSMUSG00000040112	Mrps35	MDSO23|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding	0.100000	0.681592	
mm_21993.1	chr2	167644078	167644278	-	1	NA	NA	NA	-12173	NM_023230	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.030000	0.597015	
mm_44532.1	chr5	24447703	24447903	-	1	NA	NA	NA	43	NM_022418	64295	Mm.150098	NM_022418	ENSMUSG00000028958	Tmub1	2010004O20Rik|AB030183|Hops	transmembrane and ubiquitin-like domain containing 1	protein-coding	0.090000	0.691542	
mm_46428.1	chr5	104440335	104440535	-	1	NA	NA	NA	4243	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.020000	0.502488	
mm_138184.1	chr17	34267871	34268071	+	1	NA	NA	NA	4744	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.025000	0.572139	
mm_165380.1	chr2	128751818	128752018	+	1	NA	NA	NA	52921	NM_008587	17289	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.010000	0.492537	
mm_94736.1	chr11	21091046	21091246	+	1	NA	NA	NA	-178	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.035000	0.532338	
mm_144441.1	chr18	21653226	21653426	+	1	NA	NA	NA	-958	NM_001081403	225266	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	0.030000	0.597015	-99(GCCTTTAAACCT,+,0.00)
mm_17302.1	chr2	26300099	26300299	-	1	NA	NA	NA	-5642	NM_177841	329366	Mm.77712	NM_177841	ENSMUSG00000048038	Ccdc187	4932418E24Rik	coiled-coil domain containing 187	protein-coding	0.005000	0.621891	
mm_62048.1	chr7	92393311	92393511	+	1	NA	NA	NA	158441	NM_001243047	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.020000	0.398010	
mm_49266.1	chr6	17491036	17491236	+	1	NA	NA	NA	27179	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.010000	0.378109	
mm_131805.1	chr16	22899317	22899517	+	1	NA	NA	NA	-5031	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.015000	0.462687	
mm_49994.1	chr6	41047402	41047602	+	1	NA	NA	NA	-11993	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.507463	
mm_153938.1	chr19	47464035	47464235	-	1	NA	NA	NA	276	NM_001164717	14218	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.100000	0.656716	
mm_47422.1	chr5	123141253	123141453	-	1	NA	NA	NA	-840	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.085000	0.567164	-54(CTTTATTAAAGG,-,0.00)
mm_88204.1	chr10	70174917	70175117	+	1	NA	NA	NA	-29647	NM_001304739	69563	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Mln	myoregulin	protein-coding	0.035000	0.582090	-36(CGGTTTTAATGG,-,0.00),-34(GTTTTAATGGCA,+,0.00)
mm_35438.1	chr4	38855367	38855567	-	1	NA	NA	NA	-594826	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0.015000	0.432836	
mm_130863.1	chr15	102196448	102196648	-	1	NA	NA	NA	-7097	NM_001289694	68744	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0.010000	0.417910	-57(CCCTATAAACCA,+,0.00),12(CACTATATAAAC,-,0.00)
mm_145497.1	chr18	60390536	60390736	+	1	NA	NA	NA	14607	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.432836	
mm_65972.1	chr7	30440228	30440428	-	1	NA	NA	NA	5254	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.025000	0.552239	
mm_142305.1	chr17	42742031	42742231	-	1	NA	NA	NA	48	NM_001033493	435529	Mm.136350	NM_001033493	ENSMUSG00000057899	Adgrf2	Gpr111|PGR20	adhesion G protein-coupled receptor F2	protein-coding	0.030000	0.592040	
mm_124553.1	chr14	122912949	122913149	-	1	NA	NA	NA	116	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.115000	0.731343	
mm_24605.1	chr3	93445513	93445713	+	1	NA	NA	NA	3283	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.075000	0.562189	
mm_80065.1	chr9	69458547	69458747	+	1	NA	NA	NA	1703	NR_037296	100526560		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0.005000	0.378109	
mm_150483.1	chr19	38931294	38931494	+	1	NA	NA	NA	404	NM_008234	15201	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	0.060000	0.611940	
mm_139722.1	chr17	57476083	57476283	+	1	NA	NA	NA	69131	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.005000	0.432836	
mm_124194.1	chr14	98159688	98159888	-	1	NA	NA	NA	9977	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.010000	0.378109	44(GCTTATATACAT,+,0.00)
mm_163946.1	chr14	51922997	51923197	-	1	NA	NA	NA	-324	NM_001011687	497071	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	0.005000	0.532338	
mm_102161.1	chr11	53763811	53764011	-	1	NA	NA	NA	-257	NR_106131	102465772		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.030000	0.606965	-91(TCTTATAAACAC,+,0.00)
mm_94245.1	chr11	3330431	3330631	+	1	NA	NA	NA	-200	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.020000	0.492537	
mm_148110.1	chr18	74215598	74215798	-	1	NA	NA	NA	-514	NM_028868	74322	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.015000	0.447761	
mm_131997.1	chr16	25286718	25286918	+	1	NA	NA	NA	1	NM_175165	71338	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding	0.010000	0.512438	
mm_18982.1	chr2	76851634	76851834	-	1	NA	NA	NA	130813	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.030000	0.427861	71(GAGTATAAAGAG,-,0.00)
mm_109340.1	chr12	109590809	109591009	+	1	NA	NA	NA	462	NR_029951	723866		NR_029951	ENSMUSG00000070080	Mir431	Mirn431|mir-431|mmu-mir-431	microRNA 431	ncRNA	0.035000	0.597015	
mm_20367.1	chr2	128406538	128406738	-	1	NA	NA	NA	22713	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.010000	0.437811	
mm_14377.1	chr2	129630494	129630694	+	1	NA	NA	NA	37425	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.010000	0.547264	
mm_57538.1	chr6	126644483	126644683	-	1	NA	NA	NA	1218	NM_010595	16485	Mm.40424	NM_010595	ENSMUSG00000047976	Kcna1	AI840627|Kca1-1|Kv1.1|MBK1|Mk-1|Shak|mceph	potassium voltage-gated channel, shaker-related subfamily, member 1	protein-coding	0.055000	0.601990	
mm_163093.1	chr11	69734712	69734912	-	1	NA	NA	NA	23821	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.005000	0.532338	
mm_124129.1	chr14	82142451	82142651	-	1	NA	NA	NA	2142249	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding	0.010000	0.318408	
mm_89314.1	chr10	87926301	87926501	+	1	NA	NA	NA	-40270	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.000000	0.402985	
mm_163456.1	chr12	96047098	96047298	-	1	NA	NA	NA	24	NR_103800	69423	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0.005000	0.502488	
mm_34266.1	chr4	141421762	141421962	+	1	NA	NA	NA	1083	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.045000	0.601990	
mm_91828.1	chr10	56389465	56389665	-	1	NA	NA	NA	12265	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.015000	0.412935	
mm_46941.1	chr5	114823368	114823568	-	1	NA	NA	NA	0	NM_181075	330173	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	0.100000	0.706468	
mm_72311.1	chr8	77723559	77723759	+	1	NA	NA	NA	793	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	0.010000	0.527363	-55(GCCCTTTAAAGG,-,0.00),-54(CCCTTTAAAGGA,+,0.00),-54(CCCTTTAAAGGA,-,0.00),-53(CCTTTAAAGGAC,+,0.00)
mm_100862.1	chr11	5896578	5896778	-	1	NA	NA	NA	2104	NM_022879	17898	Mm.46514	NM_022879	ENSMUSG00000020469	Myl7	MLC-2alpha|MLC2a|MYL2A|Mylc2a|RLC-A	myosin, light polypeptide 7, regulatory	protein-coding	0.015000	0.542289	
mm_78025.1	chr9	13765858	13766058	+	1	NA	NA	NA	16777	NR_024025	77116	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.010000	0.388060	-98(TCCTAGAAAAGC,-,0.00)
mm_135415.1	chr16	45158180	45158380	-	1	NA	NA	NA	393	NM_028756	74102	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	0.050000	0.611940	
mm_61096.1	chr7	51878915	51879115	+	1	NA	NA	NA	48	NM_001330607	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.025000	0.462687	
mm_60765.1	chr7	45549786	45549986	+	1	NA	NA	NA	-5042	NM_025330	66065	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.060000	0.656716	
mm_80785.1	chr9	95857848	95858048	+	1	NA	NA	NA	-66	NM_001271569	73410	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	0.105000	0.691542	
mm_44429.1	chr5	20951697	20951897	-	1	NA	NA	NA	25	NM_001080977	242860	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0.105000	0.661692	
mm_156000.1	chrX	106187106	106187306	+	1	NA	NA	NA	106	NM_008828	18655	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding	0.090000	0.641791	
mm_11323.1	chr2	30415985	30416185	+	1	NA	NA	NA	35	NM_138748	110854	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.125000	0.696517	
mm_4701.1	chr1	180849124	180849324	+	1	NA	NA	NA	-1927	NM_145943	208768	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.005000	0.398010	
mm_146343.1	chr18	82475926	82476126	+	1	NA	NA	NA	903	NM_001025245	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.055000	0.661692	
mm_80716.1	chr9	92275679	92275879	+	1	NA	NA	NA	177	NM_001195084	18828	Mm.10306	NM_008880	ENSMUSG00000032372	Plscr2	-	phospholipid scramblase 2	protein-coding	0.010000	0.437811	
mm_121952.1	chr14	24369687	24369887	-	1	NA	NA	NA	76423	NM_001033214	105418	Mm.2077	NM_001033214	ENSMUSG00000038925	E330034G19Rik	AA415275|Zpac	RIKEN cDNA E330034G19 gene	protein-coding	0.020000	0.497512	-95(CCCTTTAAATGA,-,0.00),-33(GGGTCTAAAAGC,-,0.00)
mm_135409.1	chr16	44774270	44774470	-	1	NA	NA	NA	8634	NM_021325	57781	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.020000	0.472637	-32(CCTTTAAGAGTG,+,0.00)
mm_145719.1	chr18	63150738	63150938	+	1	NA	NA	NA	172922	NM_028017	108123	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0.030000	0.517413	-34(AGGCTTAAAAGC,-,0.00)
mm_3672.1	chr1	153665491	153665691	+	1	NA	NA	NA	-82	NM_001347115	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding	0.030000	0.597015	
mm_120668.1	chr14	70552146	70552346	+	1	NA	NA	NA	-1810	NM_021877	15460	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	0.035000	0.696517	
mm_146518.1	chr18	4239151	4239351	-	1	NA	NA	NA	73419	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.005000	0.527363	
mm_145326.1	chr18	55042069	55042269	+	1	NA	NA	NA	-51989	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.005000	0.407960	
mm_45200.1	chr5	52566141	52566341	-	1	NA	NA	NA	65	NM_001310604	246316	Mm.44721	NM_144945	ENSMUSG00000039252	Lgi2	mKIAA1916	leucine-rich repeat LGI family, member 2	protein-coding	0.180000	0.835821	
mm_156797.1	chrX	162901614	162901814	+	1	NA	NA	NA	119	NM_018737	55936	Mm.2065	NM_018737	ENSMUSG00000031360	Ctps2	A830031M15Rik|AI326475|Ctpsh	cytidine 5'-triphosphate synthase 2	protein-coding	0.040000	0.601990	-74(CTTTTTAGGCGC,+,0.00)
mm_97683.1	chr11	80012586	80012786	+	1	NA	NA	NA	19580	NM_199196	52615	Mm.283410	NM_199196	ENSMUSG00000017548	Suz12	2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160	suppressor of zeste 12 homolog (Drosophila)	protein-coding	0.000000	0.353234	
mm_71332.1	chr8	45051507	45051707	+	1	NA	NA	NA	13811	NR_033588	434310	Mm.334512	NR_033588	ENSMUSG00000066158	AY512931	-	cDNA sequence AY512931	ncRNA	0.065000	0.497512	
mm_137265.1	chr17	24669641	24669841	+	1	NA	NA	NA	-11	NM_183149	213753	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	0.170000	0.825871	
mm_101613.1	chr11	35833184	35833384	-	1	NA	NA	NA	1244	NM_025936	104458	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.020000	0.437811	
mm_73299.1	chr8	105083655	105083855	+	1	NA	NA	NA	0	NM_144511	13909	Mm.482444	NM_144511	ENSMUSG00000062181	Ces3b	Ces31L|Ces3L|EG13909|ES31L|Es31|Gm4738	carboxylesterase 3B	protein-coding	0.015000	0.477612	-33(TACTATAAAAGG,-,0.00)
mm_20590.1	chr2	131164020	131164220	-	1	NA	NA	NA	-4039	NM_001311138	67326	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	0.030000	0.502488	
mm_47649.1	chr5	125390008	125390208	-	1	NA	NA	NA	-91	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.090000	0.691542	
mm_121615.1	chr14	8259173	8259373	-	1	NA	NA	NA	-254	NM_053115	93732	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0.015000	0.572139	
mm_101029.1	chr11	8579716	8579916	-	1	NA	NA	NA	84719	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.020000	0.527363	
mm_85566.1	chr9	106979860	106980060	-	1	NA	NA	NA	-88022	NM_029103	74840	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	0.000000	0.318408	81(TTCTCTTAAAGG,-,0.00)
mm_2433.1	chr1	96872139	96872339	+	1	NA	NA	NA	-68	NM_172658	227394	Mm.11662	NM_172658	ENSMUSG00000040693	Slco4c1	9530051F04|C330017E21Rik|OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20|oatp-R	solute carrier organic anion transporter family, member 4C1	protein-coding	0.080000	0.661692	
mm_31686.1	chr4	62298125	62298325	+	1	NA	NA	NA	6678	NM_001290518	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.005000	0.467662	
mm_82758.1	chr9	26861864	26862064	-	1	NA	NA	NA	-1141	NM_001113323	70893	Mm.78118	NM_001113323	ENSMUSG00000031966	Glb1l3	4921509F24Rik	galactosidase, beta 1 like 3	protein-coding	0.005000	0.417910	-35(GACTTTATATGC,-,0.00)
mm_130812.1	chr15	101734390	101734590	-	1	NA	NA	NA	8607	NM_019956	56735	Mm.358677	NM_019956	ENSMUSG00000051879	Krt71	AA589543|Ca|Cal4|Cu|Krt2-6g|mK6irs|mK6irs1	keratin 71	protein-coding	0.015000	0.572139	
mm_110607.1	chr12	56536622	56536822	-	1	NA	NA	NA	186	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.055000	0.527363	
mm_3260.1	chr1	136259347	136259547	+	1	NA	NA	NA	1426	NM_001101516	383563	Mm.40367	NM_001101516	ENSMUSG00000052759	Gpr25	Gm1300	G protein-coupled receptor 25	protein-coding	0.000000	0.527363	
mm_39948.1	chr5	31912249	31912449	+	1	NA	NA	NA	214299	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.010000	0.393035	
mm_50035.1	chr6	41137240	41137440	+	1	NA	NA	NA	-101831	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.398010	
mm_56671.1	chr6	113654821	113655021	-	1	NA	NA	NA	16454	NM_001113553	108960	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.010000	0.487562	-36(TGCTATAAAAAC,-,0.00)
mm_161867.1	chr18	35721465	35721665	-	1	NA	NA	NA	-74	NM_001033141	68545	Mm.329362	NM_001033141	ENSMUSG00000073599	Ecscr	1110006O17Rik|ARIA	endothelial cell surface expressed chemotaxis and apoptosis regulator	protein-coding	0.025000	0.567164	
mm_170577.1	chr19	5490409	5490609	+	1	NA	NA	NA	54	NM_007687	12631	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.105000	0.641791	
mm_54304.1	chr6	29526443	29526643	-	1	NA	NA	NA	-82	NM_001311083	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.100000	0.741294	
mm_131489.1	chr16	17253025	17253225	+	1	NA	NA	NA	19538	NM_178922	58180	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0.030000	0.582090	
mm_160889.1	chr11	70054728	70054928	+	1	NA	NA	NA	473	NM_001291132	11889	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.010000	0.477612	21(AGCTCTAAAGGC,-,0.00)
mm_4224.1	chr1	171331316	171331516	+	1	NA	NA	NA	2271	NM_011615	21945	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	0.020000	0.507463	
mm_42916.1	chr5	122707487	122707687	+	1	NA	NA	NA	43	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.120000	0.751244	
mm_84268.1	chr9	62665974	62666174	-	1	NA	NA	NA	-11781	NM_176922	319480	Mm.34883	NM_176922	ENSMUSG00000032243	Itga11	4732459H24Rik	integrin alpha 11	protein-coding	0.015000	0.532338	
mm_161916.1	chr18	67549121	67549321	-	1	NA	NA	NA	-48	NM_176832	68166	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire homolog 1 (Drosophila)	protein-coding	0.030000	0.472637	
mm_41628.1	chr5	96995927	96996127	+	1	NA	NA	NA	-1662	NM_080708	140780	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.010000	0.457711	
mm_162915.1	chr10	119992812	119993012	+	1	NA	NA	NA	-10	NM_001277295	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding	0.000000	0.502488	
mm_16925.1	chr2	13582559	13582759	-	1	NA	NA	NA	8348	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.020000	0.328358	-86(TACTTTAAAAAG,-,0.00)
mm_121319.1	chr14	111675016	111675216	+	1	NA	NA	NA	1	NM_198865	75409	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0.015000	0.348259	-7(TTTTTTATAGAG,+,0.00),-5(TTTTATAGAGCG,+,0.00)
mm_58725.1	chr7	13025567	13025767	+	1	NA	NA	NA	1515	NM_011588	21849	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	0.005000	0.512438	
mm_159960.1	chr6	88724770	88724970	+	1	NA	NA	NA	166	NM_001166251	23945	Mm.272197	NM_011844	ENSMUSG00000033174	Mgll	AA589436|Magl|Mgl	monoglyceride lipase	protein-coding	0.130000	0.681592	
mm_116495.1	chr13	44869624	44869824	-	1	NA	NA	NA	132372	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.085000	0.552239	-22(AACTTTAAATGG,-,0.00)
mm_49611.1	chr6	30747226	30747426	+	1	NA	NA	NA	6027	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.422886	
mm_112451.1	chr13	5862765	5862965	+	1	NA	NA	NA	1376	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.025000	0.467662	-32(GCTTTAAAACCC,+,0.00)
mm_80744.1	chr9	94772727	94772927	+	1	NA	NA	NA	20998	NR_106116	102465763		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.010000	0.437811	
mm_34430.1	chr4	145585100	145585300	+	1	NA	NA	NA	0	NM_001324416	433801	Mm.276881	NM_001013808	ENSMUSG00000078502	Gm13212	OTTMUSG00000010965	predicted gene 13212	protein-coding	0.035000	0.497512	
mm_173233.1	chrX	80456590	80456790	+	1	NA	NA	NA	-613954	NM_138751	192216	Mm.490421	NM_138751	ENSMUSG00000025666	Tmem47	3010015F07Rik|AI115536|BCMP1|Tm4sf10	transmembrane protein 47	protein-coding	0.020000	0.398010	
mm_60283.1	chr7	43975870	43976070	+	1	NA	NA	NA	-91	NM_010116	13648	Mm.440884	NM_010116	ENSMUSG00000059042	Klk1b9	EGF-BP C|Egfbp-3|Egfbp3|KAL|Klk9|kallikrein|mGk-9	kallikrein 1-related peptidase b9	protein-coding	0.000000	0.597015	53(GGGTTTTTAAAG,-,0.00),55(GTTTTTAAAGTC,+,0.00)
mm_101291.1	chr11	22007342	22007542	-	1	NA	NA	NA	-5791	NM_011023	18423	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.005000	0.587065	
mm_142170.1	chr17	36190040	36190240	-	1	NA	NA	NA	11	NM_008208	15043	Mm.426002	NM_008208	ENSMUSG00000054128	H2-T3	H-2T3|H2-Tw3|MumuTL|TL	histocompatibility 2, T region locus 3	protein-coding	0.000000	0.507463	
mm_145765.1	chr18	65007934	65008134	+	1	NA	NA	NA	-15493	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.015000	0.457711	
mm_111342.1	chr12	86884681	86884881	-	1	NA	NA	NA	33	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.120000	0.706468	
mm_10586.1	chr2	18186688	18186888	+	1	NA	NA	NA	122203	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.010000	0.412935	
mm_124692.1	chr15	6435579	6435779	+	1	NA	NA	NA	-9654	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.015000	0.497512	
mm_31706.1	chr4	62615179	62615379	+	1	NA	NA	NA	-4393	NM_001081650	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.030000	0.542289	
mm_12962.1	chr2	90579392	90579592	+	1	NA	NA	NA	1155	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.025000	0.502488	
mm_54722.1	chr6	40435995	40436195	-	1	NA	NA	NA	38	NM_175528	243780	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0.125000	0.800995	
mm_119508.1	chr14	47384502	47384702	+	1	NA	NA	NA	10742	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.010000	0.373134	
mm_131162.1	chr16	6996523	6996723	+	1	NA	NA	NA	-73212	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.005000	0.457711	-81(GACCAGAAAAGG,-,0.00)
mm_148430.1	chr19	3941824	3942024	+	1	NA	NA	NA	6738	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.020000	0.532338	
mm_111242.1	chr12	84785403	84785603	-	1	NA	NA	NA	12233	NM_028863	74316	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0.040000	0.592040	
mm_75397.1	chr8	46163452	46163652	-	1	NA	NA	NA	-6004	NM_025747	66756	Mm.133623	NM_025747	ENSMUSG00000031631	Cfap97	1110068E21Rik|4933411K20Rik|AW049273|Kiaa1430|mKIAA1430	cilia and flagella associated protein 97	protein-coding	0.130000	0.716418	
mm_163335.1	chr12	11436616	11436816	-	1	NA	NA	NA	-67	NM_012038	26950	Mm.27005	NM_012038	ENSMUSG00000054459	Vsnl1	VILIP|Vnsl1	visinin-like 1	protein-coding	0.065000	0.582090	
mm_70735.1	chr8	18899515	18899715	+	1	NA	NA	NA	51256	NM_001286469	319581	Mm.111354	NM_176951	ENSMUSG00000039814	Xkr5	5430438H03Rik|XRG5	X-linked Kx blood group related 5	protein-coding	0.015000	0.427861	
mm_91580.1	chr10	40134928	40135128	-	1	NA	NA	NA	7226	NM_028247	72472	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.020000	0.487562	
mm_163356.1	chr12	26187637	26187837	+	1	NA	NA	NA	22768	NR_131149	629481	Mm.390460	NR_131149		Gm29687	-	predicted gene, 29687	ncRNA	0.010000	0.472637	
mm_89281.1	chr10	87864692	87864892	+	1	NA	NA	NA	3681	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.030000	0.532338	
mm_70883.1	chr8	25274410	25274610	+	1	NA	NA	NA	31760	NR_040352	74489	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0.025000	0.547264	
mm_125522.1	chr15	57695119	57695319	+	1	NA	NA	NA	552	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.035000	0.412935	
mm_28704.1	chr3	95550038	95550238	-	1	NA	NA	NA	-9539	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.010000	0.452736	
mm_43009.1	chr5	123714797	123714997	+	1	NA	NA	NA	6147	NM_027494	70650	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0.010000	0.378109	
mm_154628.1	chrX	7729785	7729985	+	1	NA	NA	NA	1314	NM_138602	54637	Mm.28850	NM_138602	ENSMUSG00000031149	Praf2	AA986329|C78013|DXImx39e|JM4|Sfc20	PRA1 domain family 2	protein-coding	0.050000	0.621891	
mm_850.1	chr1	52008595	52008795	+	1	NA	NA	NA	455	NM_011487	20849	Mm.1550	NM_011487	ENSMUSG00000062939	Stat4	-	signal transducer and activator of transcription 4	protein-coding	0.030000	0.557214	
mm_8753.1	chr1	160307374	160307574	-	1	NA	NA	NA	-11502	NR_035448	100316784		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	0.015000	0.527363	
mm_50903.1	chr6	57581487	57581687	+	1	NA	NA	NA	595	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.010000	0.402985	65(CGGCATTAAAGC,-,0.00)
mm_146956.1	chr18	32969742	32969942	-	1	NA	NA	NA	30801	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.015000	0.492537	
mm_16646.1	chr2	6212875	6213075	-	1	NA	NA	NA	19	NM_024208	67856	Mm.38342	NM_024208	ENSMUSG00000039063	Echdc3	2310005D12Rik|AI662097	enoyl Coenzyme A hydratase domain containing 3	protein-coding	0.035000	0.641791	-52(AGGTCTAAAAGG,-,0.00)
mm_157267.1	chrX	19219050	19219250	-	1	NA	NA	NA	-72179	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.000000	0.412935	
mm_76816.1	chr8	104442939	104443139	-	1	NA	NA	NA	8	NM_001013380	234663	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	0.090000	0.631841	
mm_57525.1	chr6	126164857	126165057	-	1	NA	NA	NA	3	NM_001164035	18205	Mm.267570	NM_008742	ENSMUSG00000049107	Ntf3	AI316846|AI835689|HDNF|NGF-2|Nt3|Ntf-3	neurotrophin 3	protein-coding	0.080000	0.606965	
mm_129454.1	chr15	78565851	78566051	-	1	NA	NA	NA	6832	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.030000	0.557214	
mm_36618.1	chr4	89310887	89311087	-	1	NA	NA	NA	45	NM_007670	12579	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)	protein-coding	0.100000	0.681592	
mm_134107.1	chr16	9995414	9995614	-	1	NA	NA	NA	-2981	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.105000	0.711443	
mm_171187.1	chr3	42325025	42325225	-	1	NA	NA	NA	582507	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.035000	0.427861	-15(GACTTTTAAAAA,-,0.00)
mm_42815.1	chr5	121848879	121849079	+	1	NA	NA	NA	-49	NM_175474	231717	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.115000	0.716418	
mm_73914.1	chr8	119666266	119666466	+	1	NA	NA	NA	1	NM_023395	67866	Mm.87599	NM_023395	ENSMUSG00000023336	Wfdc1	2310058A03Rik|ps20	WAP four-disulfide core domain 1	protein-coding	0.000000	0.577114	
mm_14799.1	chr2	145886249	145886449	+	1	NA	NA	NA	-16892	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.015000	0.398010	
mm_170124.1	chr17	39846859	39847059	+	1	NA	NA	NA	3962	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.050000	0.482587	
mm_137290.1	chr17	24742241	24742441	+	1	NA	NA	NA	5748	NM_001346668	27361	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	0.025000	0.616915	
mm_80087.1	chr9	70213113	70213313	+	1	NA	NA	NA	5863	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.015000	0.432836	
mm_152476.1	chr19	11017933	11018133	-	1	NA	NA	NA	-70	NM_001251849	76002	Mm.139320	NM_001251849	ENSMUSG00000094584	Ms4a18	5033428B15Rik	membrane-spanning 4-domains, subfamily A, member 18	protein-coding	0.015000	0.422886	
mm_101852.1	chr11	48866255	48866455	-	1	NA	NA	NA	4991	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding	0.020000	0.497512	
mm_152849.1	chr19	24031145	24031345	-	1	NA	NA	NA	-226	NM_001114174	381217	Mm.426078	NM_001114174	ENSMUSG00000071604	Fam189a2	AI414343|AI666772|Gm967	family with sequence similarity 189, member A2	protein-coding	0.070000	0.636816	-33(TCCTATTTAAAG,-,0.00)
mm_80738.1	chr9	94696877	94697077	+	1	NA	NA	NA	27085	NM_177909	331004	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.005000	0.497512	
mm_126761.1	chr15	85859568	85859768	+	1	NA	NA	NA	-39	NM_001168672	29870	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding	0.080000	0.606965	
mm_146259.1	chr18	77800092	77800292	+	1	NA	NA	NA	5642	NM_013831	19201	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.015000	0.383085	
mm_129333.1	chr15	77815822	77816022	-	1	NA	NA	NA	26253	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.035000	0.542289	
mm_118368.1	chr13	115529697	115529897	-	1	NA	NA	NA	-427833	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.025000	0.497512	
mm_95537.1	chr11	52261451	52261651	+	1	NA	NA	NA	21044	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.020000	0.562189	
mm_123612.1	chr14	68120394	68120594	-	1	NA	NA	NA	-3258	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.030000	0.567164	
mm_166088.1	chr4	139198216	139198416	+	1	NA	NA	NA	4205	NM_001271405	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.015000	0.527363	
mm_89922.1	chr10	111226784	111226984	+	1	NA	NA	NA	62082	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.000000	0.363184	-52(TACTTTTTAAGC,-,0.00),-50(CTTTTTAAGCTC,+,0.00)
mm_4966.1	chr1	191281316	191281516	+	1	NA	NA	NA	36702	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.030000	0.567164	
mm_112084.1	chr12	112673981	112674181	-	1	NA	NA	NA	195	NM_001165894	11651	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.195000	0.845771	
mm_138559.1	chr17	35267165	35267365	+	1	NA	NA	NA	4142	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.005000	0.407960	77(GTCTTTAAAAAA,-,0.00)
mm_38350.1	chr4	137769935	137770135	-	1	NA	NA	NA	-3560	NM_001287172	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.015000	0.592040	
mm_92625.1	chr10	80260921	80261121	-	1	NA	NA	NA	-9	NM_010255	14431	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0.080000	0.716418	-90(GCCCAGAAAAGC,-,0.00)
mm_130930.1	chr15	103163215	103163415	-	1	NA	NA	NA	-31	NM_027885	71726	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0.065000	0.587065	
mm_79022.1	chr9	45906869	45907069	+	1	NA	NA	NA	-58	NM_001310840	235315	Mm.3255	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	0.090000	0.681592	
mm_138520.1	chr17	35238074	35238274	+	1	NA	NA	NA	1578	NM_023179	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.010000	0.497512	
mm_155281.1	chrX	61127905	61128105	+	1	NA	NA	NA	11627	NR_030706	331424	Mm.127263	NM_177916	ENSMUSG00000071753	C230004F18Rik	-	RIKEN cDNA C230004F18 gene	ncRNA	0.000000	0.383085	
mm_85189.1	chr9	96719342	96719542	-	1	NA	NA	NA	12233	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.035000	0.557214	61(GCCTTTAGACAC,+,0.00)
mm_96902.1	chr11	70455091	70455291	+	1	NA	NA	NA	3260	NM_025397	66172	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0.005000	0.417910	
mm_116299.1	chr13	36726336	36726536	-	1	NA	NA	NA	8041	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.030000	0.388060	
mm_99816.1	chr11	108587001	108587201	+	1	NA	NA	NA	-95508	NM_145688	76380	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0.010000	0.388060	
mm_30638.1	chr4	8811270	8811470	+	1	NA	NA	NA	120964	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.035000	0.537313	
mm_44144.1	chr5	150259721	150259921	+	1	NA	NA	NA	-109	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.025000	0.666667	
mm_98837.1	chr11	97440065	97440265	+	1	NA	NA	NA	-9995	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.135000	0.781095	
mm_66265.1	chr7	35754314	35754514	-	1	NA	NA	NA	40	NM_178704	233115	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0.100000	0.701493	
mm_105400.1	chr11	103412560	103412760	-	1	NA	NA	NA	4	NM_183034	353047	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.105000	0.661692	
mm_134960.1	chr16	31314496	31314696	-	1	NA	NA	NA	212	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.010000	0.522388	-35(GCCTATAAAGTG,+,0.00)
mm_150519.1	chr19	39035849	39036049	+	1	NA	NA	NA	-25057	NM_028191	72303	Mm.482578	NM_028191	ENSMUSG00000067231	Cyp2c65	2210009K14Rik	cytochrome P450, family 2, subfamily c, polypeptide 65	protein-coding	0.000000	0.273632	63(TCATTTATGGTC,+,0.00)
mm_161421.1	chr15	37792576	37792776	-	1	NA	NA	NA	-248	NM_134094	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.010000	0.442786	
mm_70199.1	chr7	144569802	144570002	-	1	NA	NA	NA	12534	NM_010175	14082	Mm.5126	NM_010175	ENSMUSG00000031077	Fadd	Mort1/FADD	Fas (TNFRSF6)-associated via death domain	protein-coding	0.005000	0.462687	-34(TGCCTTTAAAAG,-,0.00),-33(GCCTTTAAAAGC,+,0.00),-33(GCCTTTAAAAGC,-,0.00),-32(CCTTTAAAAGCT,+,0.00)
mm_71463.1	chr8	46534164	46534364	+	1	NA	NA	NA	-17805	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.025000	0.492537	-42(GCGCCTTAAAGG,-,0.00)
mm_90860.1	chr10	8885580	8885780	-	1	NA	NA	NA	390	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.045000	0.552239	41(CTCTATATAGGG,+,0.00),41(CTCTATATAGGG,-,0.00)
mm_71926.1	chr8	70234548	70234748	+	1	NA	NA	NA	-226	NM_133972	76813	Mm.383251	NM_133972	ENSMUSG00000002343	Armc6	2410153K17Rik|AW554412	armadillo repeat containing 6	protein-coding	0.100000	0.741294	
mm_158013.1	chrX	95658302	95658502	-	1	NA	NA	NA	107	NM_001289696	245522	Mm.336158	NM_001003916	ENSMUSG00000035062	Zc4h2	Gm372|mKIAA1166	zinc finger, C4H2 domain containing	protein-coding	0.015000	0.492537	
mm_49052.1	chr6	5048149	5048349	+	1	NA	NA	NA	144929	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.010000	0.442786	
mm_120940.1	chr14	76645563	76645763	+	1	NA	NA	NA	-31905	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.010000	0.462687	
mm_171445.1	chr4	143562513	143562713	+	1	NA	NA	NA	-4854	NM_001007579	329986	Mm.453523	NM_001007579	ENSMUSG00000070618	BC080695	-	cDNA sequence BC080695	protein-coding	0.015000	0.472637	
mm_129064.1	chr15	75603822	75604022	-	1	NA	NA	NA	7255	NM_001347039	68453	Mm.46367	NM_026730	ENSMUSG00000022579	Gpihbp1	1110002J19Rik|GPI-HBP1	GPI-anchored HDL-binding protein 1	protein-coding	0.015000	0.407960	
mm_12357.1	chr2	69749563	69749763	+	1	NA	NA	NA	26575	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.005000	0.388060	
mm_14969.1	chr2	152093393	152093593	+	1	NA	NA	NA	11964	NM_001160410	545474	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.135000	0.696517	
mm_66237.1	chr7	35396699	35396899	-	1	NA	NA	NA	-32	NM_178643	101831	Mm.389855	NM_178643	ENSMUSG00000030493	Faap24	AW124591|AW538696|C230052I12Rik	Fanconi anemia core complex associated protein 24	protein-coding	0.050000	0.572139	
mm_56651.1	chr6	113419235	113419435	-	1	NA	NA	NA	5	NM_001033204	101122	Mm.31204	NM_001033204	ENSMUSG00000051169	Rpusd3	AI527266	RNA pseudouridylate synthase domain containing 3	protein-coding	0.070000	0.616915	
mm_66433.1	chr7	44670741	44670941	-	1	NA	NA	NA	2	NM_001271540	71960	Mm.158289	NM_028021	ENSMUSG00000030739	Myh14	2400004E04Rik|II-C|NHMCII|NMHC II-C	myosin, heavy polypeptide 14	protein-coding	0.060000	0.696517	
mm_122831.1	chr14	54712249	54712449	-	1	NA	NA	NA	-175	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.020000	0.512438	
mm_641.1	chr1	40404832	40405032	+	1	NA	NA	NA	-24638	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.015000	0.477612	2(TCTTTAAAACCA,+,0.00)
mm_168655.1	chr11	87471273	87471473	+	1	NA	NA	NA	43782	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.090000	0.562189	
mm_162672.1	chr10	7473260	7473460	-	1	NA	NA	NA	117	NM_029975	77777	Mm.442442	NM_029975	ENSMUSG00000079685	Ulbp1	A430108B07Rik|MULT1	UL16 binding protein 1	protein-coding	0.015000	0.507463	
mm_134387.1	chr16	17281414	17281614	-	1	NA	NA	NA	5214	NM_177473	224019	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	0.005000	0.427861	-64(AGCCATTAAAAG,-,0.00),-62(CCATTAAAAGCT,+,0.00)
mm_18819.1	chr2	74579363	74579563	-	1	NA	NA	NA	-515	NM_027133	69605	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	0.015000	0.462687	
mm_50088.1	chr6	41523895	41524095	+	1	NA	NA	NA	2219	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.547264	
mm_150318.1	chr19	34573667	34573867	+	1	NA	NA	NA	-9762	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.015000	0.437811	
mm_19686.1	chr2	103456800	103457000	-	1	NA	NA	NA	28253	NM_009804	12359	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0.030000	0.472637	
mm_13835.1	chr2	119351164	119351364	+	1	NA	NA	NA	22	NM_026929	69065	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	0.065000	0.606965	-6(GGGTTTAAAGAG,-,0.00),-4(GTTTAAAGAGCG,+,0.00)
mm_125924.1	chr15	76204259	76204459	+	1	NA	NA	NA	1962	NM_201389	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.030000	0.626866	
mm_114863.1	chr13	93674328	93674528	+	1	NA	NA	NA	-8	NM_028772	74129	Mm.21789	NM_028772	ENSMUSG00000042102	Dmgdh	1200014D15Rik|AI787269	dimethylglycine dehydrogenase precursor	protein-coding	0.080000	0.746269	
mm_95006.1	chr11	31910681	31910881	+	1	NA	NA	NA	39841	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.005000	0.248756	
mm_36885.1	chr4	107253297	107253497	-	1	NA	NA	NA	136	NM_029985	77809	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	0.060000	0.691542	
mm_11508.1	chr2	32570746	32570946	+	1	NA	NA	NA	-12	NM_010073	13481	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0.065000	0.552239	
mm_40457.1	chr5	53604096	53604296	+	1	NA	NA	NA	13710	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.000000	0.243781	
mm_129691.1	chr15	81522850	81523050	-	1	NA	NA	NA	56634	NM_019712	56438	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.035000	0.572139	
mm_152701.1	chr19	17327688	17327888	-	1	NA	NA	NA	11717	NM_001136484	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.000000	0.358209	
mm_84407.1	chr9	65555437	65555637	-	1	NA	NA	NA	24550	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.010000	0.512438	
mm_109899.1	chr12	7901545	7901745	-	1	NA	NA	NA	-76032	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.035000	0.567164	
mm_15912.1	chr2	165062216	165062416	+	1	NA	NA	NA	6680	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.025000	0.537313	
mm_35979.1	chr4	53825788	53825988	-	1	NA	NA	NA	-157	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.060000	0.582090	
mm_62091.1	chr7	94042591	94042791	+	1	NA	NA	NA	962812	NM_021427	58238	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.045000	0.542289	
mm_164110.1	chr15	28697943	28698143	+	1	NA	NA	NA	494277	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.010000	0.398010	60(CCTTTTATACCA,+,0.00)
mm_149518.1	chr19	12440254	12440454	+	1	NA	NA	NA	12449	NM_019540	56093	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.005000	0.432836	
mm_30748.1	chr4	14864288	14864488	+	1	NA	NA	NA	169	NM_028264	72519	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360	transmembrane protein 55A	protein-coding	0.080000	0.626866	
mm_119058.1	chr14	30715688	30715888	+	1	NA	NA	NA	173	NM_001166532	54650	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.160000	0.711443	
mm_151429.1	chr19	56897772	56897972	+	1	NA	NA	NA	23456	NM_172840	240675	Mm.129534	NM_172840	ENSMUSG00000025082	Vwa2	Amaco	von Willebrand factor A domain containing 2	protein-coding	0.035000	0.592040	
mm_11101.1	chr2	28095342	28095542	+	1	NA	NA	NA	-10564	NM_010190	14134	Mm.182935	NM_010190	ENSMUSG00000026835	Fcnb	Fcn2	ficolin B	protein-coding	0.000000	0.542289	
mm_112930.1	chr13	20963792	20963992	+	1	NA	NA	NA	109407	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.000000	0.422886	-74(AGGCATTAAAGG,-,0.00),-72(GCATTAAAGGCC,+,0.00)
mm_85048.1	chr9	89738339	89738539	-	1	NA	NA	NA	36	NM_207260	330998	Mm.294417	NM_207260	ENSMUSG00000047606	Ankrd34c	B230218L05Rik|BB276295|Gm771	ankyrin repeat domain 34C	protein-coding	0.030000	0.577114	
mm_72956.1	chr8	92549174	92549374	+	1	NA	NA	NA	-125015	NM_022428	64379	Mm.137247	NM_022428	ENSMUSG00000031738	Irx6	-	Iroquois related homeobox 6 (Drosophila)	protein-coding	0.000000	0.412935	
mm_110239.1	chr12	30467296	30467496	-	1	NA	NA	NA	-38	NR_045491	69566	Mm.396405	NR_045491	ENSMUSG00000102098	2310016D03Rik	-	RIKEN cDNA 2310016D03 gene	ncRNA	0.010000	0.487562	
mm_55087.1	chr6	49215341	49215541	-	1	NA	NA	NA	-487	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.125000	0.746269	
mm_126082.1	chr15	77816278	77816478	+	1	NA	NA	NA	25797	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.015000	0.507463	
mm_154768.1	chrX	12587771	12587971	+	1	NA	NA	NA	112	NM_027439	70495	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	0.080000	0.631841	
mm_10223.1	chr2	5957509	5957709	+	1	NA	NA	NA	6140	NM_001081132	326622	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	0.015000	0.447761	
mm_38984.1	chr4	151004523	151004723	-	1	NA	NA	NA	7526	NM_011910	24111	Mm.89984	NM_011910	ENSMUSG00000028963	Uts2	UII|Ucn2|prepro-UII	urotensin 2	protein-coding	0.000000	0.338308	
mm_156046.1	chrX	108834581	108834781	+	1	NA	NA	NA	203	NR_015493	69964	Mm.160066	NR_015493	ENSMUSG00000086629	2810403D21Rik	1810022M18Rik|4632410B05Rik|AU017716	RIKEN cDNA 2810403D21 gene	ncRNA	0.050000	0.537313	
mm_78459.1	chr9	32372415	32372615	+	1	NA	NA	NA	97	NM_019659	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.015000	0.492537	
mm_54941.1	chr6	48554581	48554781	-	1	NA	NA	NA	-118	NM_001110160	243371	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	0.055000	0.512438	-79(TTGTTTTTAAGG,-,0.00),-77(GTTTTTAAGGGA,+,0.00)
mm_44020.1	chr5	147400361	147400561	+	1	NA	NA	NA	28	NM_010229	14255	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	0.085000	0.706468	
mm_122654.1	chr14	51911198	51911398	-	1	NA	NA	NA	2190	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.030000	0.532338	
mm_83643.1	chr9	49504872	49505072	-	1	NA	NA	NA	-13316	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.010000	0.343284	
mm_75245.1	chr8	39642571	39642771	-	1	NA	NA	NA	7	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.328358	
mm_107660.1	chr12	52818401	52818601	+	1	NA	NA	NA	119118	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.015000	0.432836	
mm_108479.1	chr12	83659461	83659661	+	1	NA	NA	NA	27327	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.015000	0.383085	
mm_47241.1	chr5	121521486	121521686	-	1	NA	NA	NA	109	NM_172126	280668	Mm.1453	NM_172126	ENSMUSG00000072647	Adam1a	Adam1|Ftna	a disintegrin and metallopeptidase domain 1a	protein-coding	0.010000	0.492537	
mm_53948.1	chr6	5220840	5221040	-	1	NA	NA	NA	-26994	NM_011134	18979	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.010000	0.398010	-62(CTTTTTATACCA,+,0.00)
mm_17528.1	chr2	29620437	29620637	-	1	NA	NA	NA	817	NM_001039086	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.025000	0.532338	
mm_141061.1	chr17	25754419	25754619	-	1	NA	NA	NA	-192	NM_018857	56047	Mm.17510	NM_018857	ENSMUSG00000063011	Msln	MPF	mesothelin	protein-coding	0.030000	0.582090	
mm_47540.1	chr5	124249745	124249945	-	1	NA	NA	NA	-85	NM_011256	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.195000	0.830846	
mm_126926.1	chr15	91673036	91673236	+	1	NA	NA	NA	-88	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.105000	0.716418	
mm_15100.1	chr2	153346061	153346261	+	1	NA	NA	NA	22	NM_001039939	228790	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0.180000	0.840796	
mm_168484.1	chr11	49198114	49198314	+	1	NA	NA	NA	-5286	NM_001024846	22720	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0.030000	0.492537	-28(GCCTATATAAGC,-,0.00)
mm_39108.1	chr4	154927989	154928189	-	1	NA	NA	NA	-12	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.005000	0.507463	
mm_28960.1	chr3	100684606	100684806	-	1	NA	NA	NA	767	NM_010763	17156	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0.025000	0.487562	
mm_159675.1	chr4	155397826	155398026	-	1	NA	NA	NA	143	NM_008072	14403	Mm.388925	NM_008072	ENSMUSG00000029054	Gabrd	AI853201	gamma-aminobutyric acid (GABA) A receptor, subunit delta	protein-coding	0.065000	0.671642	
mm_70210.1	chr7	144896819	144897019	-	1	NA	NA	NA	387	NM_008003	14170	Mm.3904	NM_008003	ENSMUSG00000031073	Fgf15	FGF19	fibroblast growth factor 15	protein-coding	0.070000	0.597015	
mm_121077.1	chr14	99046279	99046479	+	1	NA	NA	NA	2	NM_175265	77744	Mm.23503	NM_175265	ENSMUSG00000022070	Bora	6720463M24Rik|AI317232	bora, aurora kinase A activator	protein-coding	0.120000	0.666667	
mm_73362.1	chr8	105595045	105595245	+	1	NA	NA	NA	-10084	NM_001081241	75687	Mm.41261	NM_001081241	ENSMUSG00000038604	Fam65a	2310066E14Rik|AI837433	family with sequence similarity 65, member A	protein-coding	0.035000	0.572139	
mm_50281.1	chr6	47244288	47244488	+	1	NA	NA	NA	-8	NM_025771	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.020000	0.522388	
mm_64335.1	chr7	142376238	142376438	+	1	NA	NA	NA	-2592	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.010000	0.567164	
mm_124225.1	chr14	100284870	100285070	-	1	NA	NA	NA	-135174	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.065000	0.626866	
mm_110505.1	chr12	54656407	54656607	-	1	NA	NA	NA	65	NM_134054	104725	Mm.485026	NM_134054	ENSMUSG00000044408	Sptssa	1110002B05Rik|AA407909|AA409588|AU041967|Ssspta	serine palmitoyltransferase, small subunit A	protein-coding	0.095000	0.706468	
mm_68486.1	chr7	110990289	110990489	-	1	NA	NA	NA	-7928	NM_194464	17540	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0.010000	0.512438	-33(TGCTATAAAAGG,-,0.00)
mm_89382.1	chr10	89443960	89444160	+	1	NA	NA	NA	-93	NM_001033331	237436	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0.075000	0.592040	
mm_31635.1	chr4	59434250	59434450	+	1	NA	NA	NA	4283	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.005000	0.557214	
mm_113005.1	chr13	21865747	21865947	+	1	NA	NA	NA	31202	NR_035500	100316716		NR_035500	ENSMUSG00000088148	Mir1983	mmu-mir-1983	microRNA 1983	ncRNA	0.015000	0.432836	
mm_149010.1	chr19	8725767	8725967	+	1	NA	NA	NA	1	NR_004445	100127111	Mm.292489	NR_004445	ENSMUSG00000065087	Snord22	Rnu22|U22	small nucleolar RNA, C/D box 22	snoRNA	0.005000	0.412935	
mm_66581.1	chr7	45340664	45340864	-	1	NA	NA	NA	5495	NM_010473	15464	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.040000	0.562189	
mm_21549.1	chr2	164070951	164071151	-	1	NA	NA	NA	51	NM_025996	67145	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	0.075000	0.641791	-85(GGGCCTTAAAGG,-,0.00),-84(GGCCTTAAAGGC,-,0.00),-82(CCTTAAAGGCAC,+,0.00)
mm_70630.1	chr8	13757620	13757820	+	1	NA	NA	NA	30	NM_027276	69957	Mm.182412	NM_027276	ENSMUSG00000038416	Cdc16	2700071J12Rik|2810431D22Rik|APC6	CDC16 cell division cycle 16	protein-coding	0.125000	0.746269	
mm_165258.1	chr2	72908483	72908683	-	1	NA	NA	NA	70698	NM_001098425	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.035000	0.532338	
mm_91048.1	chr10	18743578	18743778	-	1	NA	NA	NA	80	NM_001033258	215821	Mm.40491	NM_001033258	ENSMUSG00000019852	Arfgef3	9630004D11|B930094H20Rik|BIG3|D10Bwg1379e|mKIAA1244	ARFGEF family member 3	protein-coding	0.100000	0.676617	
mm_113137.1	chr13	24635929	24636129	+	1	NA	NA	NA	-2619	NM_001080381	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.005000	0.462687	
mm_18494.1	chr2	62606242	62606442	-	1	NA	NA	NA	-32321	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.050000	0.462687	
mm_116177.1	chr13	30820637	30820837	-	1	NA	NA	NA	71504	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.015000	0.527363	
mm_115651.1	chr13	12332105	12332305	-	1	NA	NA	NA	8527	NM_033268	11472	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	0.000000	0.477612	
mm_54510.1	chr6	35511403	35511603	-	1	NA	NA	NA	28385	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.298507	
mm_167958.1	chrX	141980683	141980883	+	1	NA	NA	NA	216153	NM_001007576	245650	Mm.208511	NM_001007576	ENSMUSG00000042282	Gucy2f	A930002I06|GC-F|GC2	guanylate cyclase 2f	protein-coding	0.005000	0.447761	
mm_167699.1	chr9	89199256	89199456	+	1	NA	NA	NA	83	NM_007534	12045	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0.015000	0.532338	
mm_10140.1	chr2	4152530	4152730	+	1	NA	NA	NA	-233	NM_172475	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.020000	0.497512	
mm_59639.1	chr7	28157685	28157885	+	1	NA	NA	NA	-11963	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.045000	0.626866	
mm_147991.1	chr18	67641216	67641416	-	1	NA	NA	NA	20	NM_001081073	225659	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0.150000	0.721393	
mm_80250.1	chr9	72749208	72749408	+	1	NA	NA	NA	-57966	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.015000	0.507463	
mm_17026.1	chr2	19431910	19432110	-	1	NA	NA	NA	-13653	NM_018809	19213	Mm.69647	NM_018809	ENSMUSG00000026735	Ptf1a	PTF1-p48|PTF1p48|bHLHa29	pancreas specific transcription factor, 1a	protein-coding	0.065000	0.666667	
mm_77766.1	chr9	3004407	3004607	+	1	NA	NA	NA	34236	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.030000	0.338308	
mm_103734.1	chr11	79974362	79974562	-	1	NA	NA	NA	-12075	NM_144826	216987	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.065000	0.646766	
mm_132419.1	chr16	35155438	35155638	+	1	NA	NA	NA	-98	NM_001012765	224129	Mm.41137	NM_001012765	ENSMUSG00000022840	Adcy5	AW121902|Ac5	adenylate cyclase 5	protein-coding	0.085000	0.706468	
mm_144634.1	chr18	32958140	32958340	+	1	NA	NA	NA	19199	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.015000	0.462687	6(CCCTTTAAACCA,+,0.00)
mm_48527.1	chr5	142903549	142903749	-	1	NA	NA	NA	3105	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.020000	0.298507	35(GGATTTAAAAAC,-,0.00)
mm_29149.1	chr3	105936170	105936370	-	1	NA	NA	NA	-3606	NM_001033780	433638	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	0.010000	0.338308	
mm_92998.1	chr10	86732324	86732524	-	1	NA	NA	NA	19659	NM_153595	103220	Mm.440762	NM_153595	ENSMUSG00000044937	Ttc41	AI449705|AU041509|Gnn	tetratricopeptide repeat domain 41	protein-coding	0.055000	0.537313	-36(GGCTATTTAAAG,-,0.00),-34(CTATTTAAAGAG,+,0.00)
mm_87319.1	chr10	42860526	42860726	+	1	NA	NA	NA	114	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.045000	0.492537	
mm_103995.1	chr11	84869969	84870169	-	1	NA	NA	NA	64	NR_131201	102635561	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	0.105000	0.716418	
mm_126849.1	chr15	89169688	89169888	+	1	NA	NA	NA	4163	NM_001159521	140570	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.020000	0.587065	
mm_132539.1	chr16	37878269	37878469	+	1	NA	NA	NA	9969	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.045000	0.457711	
mm_85239.1	chr9	98954693	98954893	-	1	NA	NA	NA	517	NR_003248	768252	Mm.129645	NR_003248	ENSMUSG00000097072	Foxl2os	ENSMUSG00000074122	forkhead box L2, opposite strand	ncRNA	0.050000	0.621891	
mm_14171.1	chr2	126675804	126676004	+	1	NA	NA	NA	-312	NR_073183	14391	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.115000	0.676617	
mm_3973.1	chr1	164193272	164193472	+	1	NA	NA	NA	-41155	NR_037987	100503816	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	0.005000	0.447761	
mm_109159.1	chr12	108179712	108179912	+	1	NA	NA	NA	74	NM_009832	12454	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	0.080000	0.592040	
mm_121202.1	chr14	103052211	103052411	+	1	NA	NA	NA	5299	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.000000	0.507463	
mm_49767.1	chr6	34863057	34863257	+	1	NA	NA	NA	11	NM_197986	68487	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.020000	0.502488	
mm_14413.1	chr2	130405176	130405376	+	1	NA	NA	NA	17	NM_029375	75656	Mm.174788	NM_029375	ENSMUSG00000027409	1700020A23Rik	-	RIKEN cDNA 1700020A23 gene	protein-coding	0.000000	0.502488	
mm_16021.1	chr2	167504033	167504233	+	1	NA	NA	NA	-11259	NM_170756	263876	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	0.080000	0.651741	
mm_89840.1	chr10	106879247	106879447	+	1	NA	NA	NA	244317	NM_001142804	380660	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding	0.005000	0.363184	
mm_150959.1	chr19	46396842	46397042	+	1	NA	NA	NA	46	NM_015752	24069	Mm.41210	NM_015752	ENSMUSG00000025231	Sufu	Su(fu)	suppressor of fused homolog (Drosophila)	protein-coding	0.095000	0.671642	
mm_51635.1	chr6	85911760	85911960	+	1	NA	NA	NA	3817	NM_023160	66116	Mm.13036	NM_023160	ENSMUSG00000057103	Nat8f1	1110002I11Rik|AI266962|Cml1	N-acetyltransferase 8 (GCN5-related) family member 1	protein-coding	0.010000	0.502488	
mm_29687.1	chr3	123034869	123035069	-	1	NA	NA	NA	18	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.025000	0.502488	-51(CTATATATAGCC,+,0.00)
mm_57418.1	chr6	124911590	124911790	-	1	NA	NA	NA	15	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.040000	0.641791	
mm_144892.1	chr18	36952541	36952741	+	1	NA	NA	NA	-7	NM_001174154	100384868	Mm.247203	NM_001174154	ENSMUSG00000103458	Gm37013	Pcdha4-g	predicted gene, 37013	protein-coding	0.040000	0.447761	
mm_20961.1	chr2	151751346	151751546	-	1	NA	NA	NA	19	NR_138568	75283	Mm.195735	NM_029235		4930556L07Rik	1700020P01Rik|4930593I08Rik	RIKEN cDNA 4930556L07 gene	ncRNA	0.015000	0.502488	
mm_86296.1	chr9	122294284	122294484	-	1	NA	NA	NA	39	NM_001271873	102566	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	0.140000	0.756219	
mm_12092.1	chr2	60366388	60366588	+	1	NA	NA	NA	16743	NM_013825	17076	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	0.015000	0.487562	
mm_43656.1	chr5	138619189	138619389	+	1	NA	NA	NA	454	NM_001163797	24135	Mm.27575	NM_013844	ENSMUSG00000058291	Zfp68	KRAB3|KRAZ2|Zfp70|mszf22|mszf49	zinc finger protein 68	protein-coding	0.025000	0.472637	-82(GCTTATAAAGAA,+,0.00)
mm_108701.1	chr12	86952405	86952605	+	1	NA	NA	NA	5162	NM_001289432	217732	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.020000	0.487562	
mm_165515.1	chr2	173218698	173218898	-	1	NA	NA	NA	124	NM_021394	58203	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.010000	0.582090	
mm_42163.1	chr5	112259212	112259412	+	1	NA	NA	NA	3492	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.065000	0.597015	
mm_42075.1	chr5	110110183	110110383	+	1	NA	NA	NA	191	NM_001163996	675812	Mm.442122	NM_001163996	ENSMUSG00000023284	Zfp605	A830023I12Rik	zinc finger protein 605	protein-coding	0.035000	0.552239	
mm_63162.1	chr7	123819846	123820046	+	1	NA	NA	NA	-163235	NM_001252072	628779	Mm.40210	NM_001252072	ENSMUSG00000078591	Hs3st4	EG628779|Gm6915	heparan sulfate (glucosamine) 3-O-sulfotransferase 4	protein-coding	0.005000	0.482587	
mm_27637.1	chr3	62506858	62507058	-	1	NA	NA	NA	30	NM_028136	72162	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	0.115000	0.691542	
mm_172595.1	chr8	13896057	13896257	+	1	NA	NA	NA	-5886	NM_025556	66423	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	0.020000	0.502488	
mm_62176.1	chr7	97400031	97400231	+	1	NA	NA	NA	128	NM_024220	68197	Mm.334031	NM_024220	ENSMUSG00000030647	Ndufc2	1810004I06Rik|2010300P09Rik|G1|R75094	NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2	protein-coding	0.080000	0.577114	
mm_3362.1	chr1	138180275	138180475	+	1	NA	NA	NA	-5070	NM_001268286	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.422886	
mm_152656.1	chr19	12795272	12795472	-	1	NA	NA	NA	751	NR_024093	664779	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0.120000	0.800995	
mm_12812.1	chr2	80315386	80315586	+	1	NA	NA	NA	20	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.090000	0.651741	
mm_119761.1	chr14	54171479	54171679	+	1	NA	NA	NA	82350	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.427861	-74(AGCCCTAAAAGA,-,0.00)
mm_1674.1	chr1	74794544	74794744	+	1	NA	NA	NA	2625	NM_009518	22409	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0.110000	0.736318	
mm_51720.1	chr6	86864829	86865029	+	1	NA	NA	NA	15412	NM_001040106	269774	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	0.005000	0.328358	
mm_151019.1	chr19	46772316	46772516	+	1	NA	NA	NA	10807	NM_001102471	94219	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0.015000	0.542289	
mm_39195.1	chr4	155999373	155999573	-	1	NA	NA	NA	6136	NM_001302468	20318	Mm.293517	NM_011341	ENSMUSG00000029076	Sdf4	Cab45	stromal cell derived factor 4	protein-coding	0.030000	0.552239	
mm_133036.1	chr16	57353147	57353347	+	1	NA	NA	NA	-30	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.035000	0.522388	
mm_77336.1	chr8	119558605	119558805	-	1	NA	NA	NA	56	NM_001167910	56453	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	0.170000	0.736318	
mm_15227.1	chr2	154548776	154548976	+	1	NA	NA	NA	-28	NM_029305	75480	Mm.440434	NM_029305	ENSMUSG00000038523	1700003F12Rik	-	RIKEN cDNA 1700003F12 gene	protein-coding	0.010000	0.582090	
mm_2327.1	chr1	92752084	92752284	+	1	NA	NA	NA	-79502	NM_016696	14733	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.020000	0.567164	
mm_35345.1	chr4	32248240	32248440	-	1	NA	NA	NA	-169095	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.000000	0.457711	
mm_91543.1	chr10	39638664	39638864	-	1	NA	NA	NA	25830	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.010000	0.353234	7(AGGTTTAAAAGC,-,0.00)
mm_54870.1	chr6	42598029	42598229	-	1	NA	NA	NA	-757	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.010000	0.437811	
mm_82812.1	chr9	30781292	30781492	-	1	NA	NA	NA	139558	NM_001329420	235130	Mm.65867	NM_001024139	ENSMUSG00000033453	Adamts15	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15	protein-coding	0.010000	0.537313	
mm_392.1	chr1	34099639	34099839	+	1	NA	NA	NA	-17620	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.005000	0.348259	
mm_12104.1	chr2	61578895	61579095	+	1	NA	NA	NA	409	NM_011529	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.010000	0.278607	-66(GAGTTTTAAAAG,-,0.00)
mm_12399.1	chr2	70215719	70215919	+	1	NA	NA	NA	176693	NM_177376	329421	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0.030000	0.517413	-80(ACCTATAAAAGT,-,0.00),-31(GTATTTATAGTC,+,0.00)
mm_121103.1	chr14	100213089	100213289	+	1	NA	NA	NA	-63393	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.020000	0.452736	
mm_108914.1	chr12	100207280	100207480	+	1	NA	NA	NA	7236	NM_001313934	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.015000	0.457711	
mm_39343.1	chr5	8893735	8893935	+	1	NA	NA	NA	114	NM_008830	18670	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.145000	0.766169	
mm_111931.1	chr12	108888662	108888862	-	1	NA	NA	NA	4436	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.015000	0.467662	
mm_172994.1	chrM	1314	1514	+	1	NA	NA	NA	NA	NA									0.020000	0.333333	
mm_110235.1	chr12	30373209	30373409	-	1	NA	NA	NA	66	NM_172951	268534	Mm.279765	NM_172951	ENSMUSG00000020672	Sntg2	2210008K22Rik|9530013L23|BB121248|G2syn|Syn5	syntrophin, gamma 2	protein-coding	0.110000	0.731343	
mm_117687.1	chr13	94278949	94279149	-	1	NA	NA	NA	6232	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.010000	0.427861	
mm_140999.1	chr17	24886289	24886489	-	1	NA	NA	NA	-39	NM_011956	26426	Mm.36718	NM_011956	ENSMUSG00000039183	Nubp2	D17Wsu11e	nucleotide binding protein 2	protein-coding	0.055000	0.552239	
mm_31553.1	chr4	56745816	56746016	+	1	NA	NA	NA	2494	NM_009611	11470	Mm.30959	NM_009611	ENSMUSG00000070979	Actl7a	Tact2	actin-like 7a	protein-coding	0.015000	0.487562	
mm_49455.1	chr6	29396566	29396766	+	1	NA	NA	NA	82	NM_001347073	232664	Mm.251303	NM_145574	ENSMUSG00000029769	Ccdc136	4921511K06Rik|BC006583	coiled-coil domain containing 136	protein-coding	0.115000	0.800995	
mm_29128.1	chr3	105487949	105488149	-	1	NA	NA	NA	29233	NM_019931	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	0.010000	0.492537	
mm_147689.1	chr18	60733370	60733570	-	1	NA	NA	NA	-20081	NM_008306	15531	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.010000	0.592040	
mm_91426.1	chr10	32890026	32890226	-	1	NA	NA	NA	-211	NM_001025286	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding	0.155000	0.805970	
mm_166147.1	chr5	3927439	3927639	+	1	NA	NA	NA	-647	NM_194462	100986	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	0.005000	0.393035	
mm_58168.1	chr6	142589838	142590038	-	1	NA	NA	NA	-18324	NM_008428	16523	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding	0.010000	0.507463	
mm_13039.1	chr2	91082134	91082334	+	1	NA	NA	NA	-11919	NM_001290765	68427	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.010000	0.631841	
mm_82492.1	chr9	18478182	18478382	-	1	NA	NA	NA	-113	NM_028557	73503	Mm.160088	NM_028557	ENSMUSG00000038691	Mbd3l1	1700070G05Rik|1700095H13Rik|Mbd3l	methyl-CpG binding domain protein 3-like 1	protein-coding	0.005000	0.427861	
mm_8161.1	chr1	136949446	136949646	-	1	NA	NA	NA	4084	NM_001159769	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	0.035000	0.621891	
mm_103553.1	chr11	77718753	77718953	-	1	NA	NA	NA	6440	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.020000	0.442786	
mm_170652.1	chr2	101791932	101792132	+	1	NA	NA	NA	5675	NM_175181	72446	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0.010000	0.452736	
mm_52664.1	chr6	117906623	117906823	+	1	NA	NA	NA	-59	NM_001166431	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.085000	0.681592	
mm_77539.1	chr8	123042158	123042358	-	1	NA	NA	NA	26	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.150000	0.786070	
mm_17032.1	chr2	20341017	20341217	-	1	NA	NA	NA	51204	NM_001081006	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.010000	0.417910	57(GTTTTTATACAA,+,0.00)
mm_124577.1	chr14	124594075	124594275	-	1	NA	NA	NA	82952	NM_207667	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.000000	0.407960	
mm_148832.1	chr19	6342455	6342655	+	1	NA	NA	NA	1395	NR_117093	26412	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0.010000	0.552239	
mm_115561.1	chr13	9764296	9764496	-	1	NA	NA	NA	74	NM_001347470	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.175000	0.835821	
mm_140641.1	chr17	12675634	12675834	-	1	NA	NA	NA	104	NM_009202	20517	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.035000	0.552239	
mm_29864.1	chr3	130060925	130061125	-	1	NA	NA	NA	-118	NM_207209	99683	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.095000	0.666667	
mm_10643.1	chr2	20548219	20548419	+	1	NA	NA	NA	28806	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.010000	0.378109	-78(GAGTCTATAAGC,-,0.00)
mm_84021.1	chr9	57681809	57682009	-	1	NA	NA	NA	1746	NM_009993	13077	Mm.15537	NM_009993	ENSMUSG00000032310	Cyp1a2	CP12|Cyp1a1|P450-3	cytochrome P450, family 1, subfamily a, polypeptide 2	protein-coding	0.040000	0.542289	
mm_64245.1	chr7	141702597	141702797	+	1	NA	NA	NA	12357	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.015000	0.527363	
mm_121949.1	chr14	24245574	24245774	-	1	NA	NA	NA	246	NM_001163513	71228	Mm.68971	NM_027726	ENSMUSG00000021782	Dlg5	4933429D20Rik|T25557|mKIAA0583	discs, large homolog 5 (Drosophila)	protein-coding	0.120000	0.761194	
mm_104123.1	chr11	86757208	86757408	-	1	NA	NA	NA	184	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.040000	0.641791	
mm_114973.1	chr13	97241123	97241323	+	1	NA	NA	NA	118	NM_007930	13803	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.155000	0.781095	
mm_48461.1	chr5	140826633	140826833	-	1	NA	NA	NA	3698	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.000000	0.298507	
mm_167820.1	chr9	124316811	124317011	-	1	NA	NA	NA	-4217	NM_001243119	630836	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0.020000	0.452736	
mm_137250.1	chr17	24529008	24529208	+	1	NA	NA	NA	857	NR_045289	75614	Mm.440235	NR_045289	ENSMUSG00000093565	Rab26os	2610019E17Rik	RAB26, member RAS oncogene family, opposite strand	ncRNA	0.010000	0.477612	
mm_119614.1	chr14	51114288	51114488	+	1	NA	NA	NA	-2165	NM_203508	219026	Mm.297297	NM_203508	ENSMUSG00000072575	Eddm3b	Fam12|Gm75	epididymal protein 3B	protein-coding	0.020000	0.522388	
mm_56602.1	chr6	108938587	108938787	-	1	NA	NA	NA	110046	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.020000	0.442786	
mm_37967.1	chr4	133432898	133433098	-	1	NA	NA	NA	-47135	NM_175307	100342	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	0.025000	0.527363	
mm_62478.1	chr7	101871446	101871646	+	1	NA	NA	NA	-758	NM_001252552	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.000000	0.492537	
mm_165015.1	chr19	29068610	29068810	+	1	NA	NA	NA	1409	NR_045687	100503337	Mm.103412	NR_045687		Gm9895	ENSMUSG00000052976	predicted gene 9895	ncRNA	0.005000	0.358209	-85(CCATTAATAGGT,+,0.00),-72(TGCTATTTAAGA,-,0.00),56(GCCCTTTAAAGA,-,0.00),57(CCCTTTAAAGAA,+,0.00)
mm_19488.1	chr2	93203270	93203470	-	1	NA	NA	NA	15786	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.015000	0.467662	
mm_109735.1	chr12	117153765	117153965	+	1	NA	NA	NA	-2596	NR_033538	100038689	Mm.445351	NR_033538	ENSMUSG00000099907	Gm10421	ENSMUSG00000072792	predicted gene 10421	ncRNA	0.175000	0.791045	
mm_27721.1	chr3	68990875	68991075	-	1	NA	NA	NA	13595	NM_026641	68259	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	0.040000	0.517413	
mm_82779.1	chr9	27155322	27155522	-	1	NA	NA	NA	-1	NM_023277	83964	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	0.120000	0.681592	
mm_88342.1	chr10	75764360	75764560	+	1	NA	NA	NA	-103	NM_172549	104248	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0.080000	0.557214	
mm_143900.1	chr17	84790451	84790651	-	1	NA	NA	NA	235	NM_028233	72416	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0.100000	0.701493	
mm_65884.1	chr7	29853502	29853702	-	1	NA	NA	NA	46	NM_173738	233057	Mm.296864	NM_173738	ENSMUSG00000050855	Zfp940	-	zinc finger protein 940	protein-coding	0.055000	0.587065	
mm_131451.1	chr16	16870632	16870832	+	1	NA	NA	NA	-4	NM_001326576	21976	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding	0.075000	0.651741	
mm_33516.1	chr4	130928600	130928800	+	1	NA	NA	NA	15366	NM_010686	16792	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3	lysosomal-associated protein transmembrane 5	protein-coding	0.030000	0.582090	
mm_167553.1	chr9	35000344	35000544	+	1	NA	NA	NA	-116284	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.010000	0.492537	
mm_163853.1	chr14	19418277	19418477	-	1	NA	NA	NA	184210	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.333333	
mm_126480.1	chr15	81585384	81585584	+	1	NA	NA	NA	-730	NM_177821	328572	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.070000	0.696517	
mm_815.1	chr1	46066732	46066932	+	1	NA	NA	NA	94	NM_001160386	227058	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	0.045000	0.517413	
mm_149655.1	chr19	18671096	18671296	+	1	NA	NA	NA	416	NM_026120	67383	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	0.180000	0.781095	
mm_151276.1	chr19	55251858	55252058	+	1	NA	NA	NA	-1411	NM_027976	433256	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.025000	0.552239	
mm_49103.1	chr6	8209220	8209420	+	1	NA	NA	NA	93	NM_145374	252875	Mm.257151	NM_145374	ENSMUSG00000042447	Mios	C81488	missing oocyte, meiosis regulator, homolog (Drosophila)	protein-coding	0.125000	0.746269	
mm_160214.1	chr7	98493966	98494166	+	1	NA	NA	NA	-156	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.040000	0.567164	-91(TGCTTTAAAAGT,-,0.00),-90(GCTTTAAAAGTC,+,0.00)
mm_74379.1	chr8	128685702	128685902	+	1	NA	NA	NA	148	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.160000	0.776119	
mm_48255.1	chr5	137831116	137831316	-	1	NA	NA	NA	5062	NM_153510	231805	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.005000	0.497512	
mm_101643.1	chr11	36477566	36477766	-	1	NA	NA	NA	466575	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.020000	0.388060	-65(CGCCCTAAAAGC,-,0.00)
mm_123567.1	chr14	66910826	66911026	-	1	NA	NA	NA	-282	NM_175498	239157	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	0.090000	0.696517	
mm_151426.1	chr19	56873950	56874150	+	1	NA	NA	NA	-366	NM_172840	240675	Mm.129534	NM_172840	ENSMUSG00000025082	Vwa2	Amaco	von Willebrand factor A domain containing 2	protein-coding	0.080000	0.577114	
mm_16714.1	chr2	7125505	7125705	-	1	NA	NA	NA	-44303	NM_001160292	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.000000	0.398010	-25(TCTTTAAAGGTC,+,0.00)
mm_79740.1	chr9	62345350	62345550	+	1	NA	NA	NA	4107	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.000000	0.532338	
mm_169796.1	chr16	16111223	16111423	+	1	NA	NA	NA	35528	NM_146068	224008	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0.000000	0.373134	
mm_37404.1	chr4	121396481	121396681	-	1	NA	NA	NA	26518	NM_001144948	666921	Mm.477980	NM_001144948	ENSMUSG00000078576	Gm12886	OTTMUSG00000008908	predicted gene 12886	protein-coding	0.015000	0.547264	
mm_155549.1	chrX	74424512	74424712	+	1	NA	NA	NA	0	NM_001161421	16151	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	0.000000	0.517413	
mm_170640.1	chr19	8989129	8989329	+	1	NA	NA	NA	-55	NR_104460	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.090000	0.706468	
mm_42105.1	chr5	110514842	110515042	+	1	NA	NA	NA	19	NR_102290	231603	Mm.22836	NM_173766	ENSMUSG00000048215	A630023P12Rik	-	RIKEN cDNA A630023P12 gene	ncRNA	0.015000	0.477612	
mm_128460.1	chr15	50795310	50795510	-	1	NA	NA	NA	93639	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.333333	
mm_29826.1	chr3	129683205	129683405	-	1	NA	NA	NA	41781	NM_001310737	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.040000	0.522388	
mm_10047.1	chr1	193173308	193173508	-	1	NA	NA	NA	-61	NM_001160360	319266	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	0.060000	0.567164	
mm_6307.1	chr1	71585474	71585674	-	1	NA	NA	NA	28418	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.015000	0.298507	
mm_28733.1	chr3	95736088	95736288	-	1	NA	NA	NA	-1215	NR_105981	102466787		NR_105981	ENSMUSG00000098737	Mir7014	Gm27837|mmu-mir-7014	microRNA 7014	ncRNA	0.025000	0.562189	
mm_35328.1	chr4	26346557	26346757	-	1	NA	NA	NA	-5	NM_172865	242362	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.115000	0.716418	
mm_33701.1	chr4	133625898	133626098	+	1	NA	NA	NA	7431	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.020000	0.577114	
mm_76891.1	chr8	105700956	105701156	-	1	NA	NA	NA	39	NM_001012638	497652	Mm.12964	NM_001012638	ENSMUSG00000038000	Acd	-	adrenocortical dysplasia	protein-coding	0.085000	0.646766	
mm_46125.1	chr5	92490326	92490526	-	1	NA	NA	NA	15231	NM_007644	12492	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.010000	0.388060	
mm_161959.1	chr19	7268511	7268711	+	1	NA	NA	NA	332	NM_001320554	104383	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.140000	0.776119	
mm_164890.1	chr18	61826954	61827154	-	1	NA	NA	NA	-40392	NM_178928	106877	Mm.26632	NM_178928	ENSMUSG00000033032	Afap1l1	AI173486	actin filament associated protein 1-like 1	protein-coding	0.005000	0.492537	
mm_91173.1	chr10	20724880	20725080	-	1	NA	NA	NA	98	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.055000	0.636816	
mm_13879.1	chr2	119972288	119972488	+	1	NA	NA	NA	-311	NM_011941	26390	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	0.090000	0.656716	-44(CCTTTACTAGGC,+,0.00)
mm_165356.1	chr2	121413829	121414029	+	1	NA	NA	NA	27	NM_007952	14827	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	0.120000	0.721393	
mm_75541.1	chr8	57487471	57487671	-	1	NA	NA	NA	289	NM_021788	60406	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	0.155000	0.766169	
mm_111832.1	chr12	107735396	107735596	-	1	NA	NA	NA	-8	NR_045973	74968	Mm.359821	NR_045973	ENSMUSG00000085641	4930465M20Rik	4930431H15Rik	RIKEN cDNA 4930465M20 gene	ncRNA	0.020000	0.572139	
mm_131034.1	chr16	3745722	3745922	+	1	NA	NA	NA	1723	NM_148924	74120	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.020000	0.572139	
mm_154376.1	chrM	11027	11227	+	1	NA	NA	NA	NA	NA									0.025000	0.442786	
mm_105124.1	chr11	101175342	101175542	-	1	NA	NA	NA	1	NM_007721	12777	Mm.8021	NM_007721	ENSMUSG00000044052	Ccr10	Cmkbr9|Gpr2	chemokine (C-C motif) receptor 10	protein-coding	0.015000	0.601990	
mm_103132.1	chr11	70237519	70237719	-	1	NA	NA	NA	295	NM_001177601	104457	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	0.120000	0.726368	
mm_79589.1	chr9	58275448	58275648	+	1	NA	NA	NA	22384	NM_026942	69106	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.015000	0.492537	
mm_55405.1	chr6	60829705	60829905	-	1	NA	NA	NA	50	NM_009221	20617	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alphaSYN	synuclein, alpha	protein-coding	0.015000	0.457711	
mm_82004.1	chr9	121707900	121708100	+	1	NA	NA	NA	-2389	NM_026794	26901	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	0.015000	0.472637	
mm_68012.1	chr7	100947444	100947644	-	1	NA	NA	NA	-15383	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.010000	0.502488	
mm_161726.1	chr17	28350262	28350462	-	1	NA	NA	NA	-16	NM_001204156	21678	Mm.6655	NM_011566	ENSMUSG00000002249	Tead3	DTEF-1|ETFR-1|TEAD-3|TEF-5|Tcf13r2	TEA domain family member 3	protein-coding	0.105000	0.761194	
mm_124827.1	chr15	9092129	9092329	+	1	NA	NA	NA	20969	NM_001040395	68646	Mm.244226	NM_001040395	ENSMUSG00000022253	Nadk2	MNADK|Nadkd1	NAD kinase 2, mitochondrial	protein-coding	0.005000	0.353234	
mm_153949.1	chr19	47622208	47622408	-	1	NA	NA	NA	42289	NM_001164639	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0.035000	0.398010	
mm_103922.1	chr11	83604598	83604798	-	1	NA	NA	NA	-11611	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.015000	0.462687	
mm_115496.1	chr13	3804222	3804422	-	1	NA	NA	NA	-4	NM_027416	70405	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0.030000	0.611940	
mm_103882.1	chr11	83530557	83530757	-	1	NA	NA	NA	-139	NM_013653	20304	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.000000	0.487562	
mm_91792.1	chr10	53371722	53371922	-	1	NA	NA	NA	8029	NM_001204983	100038725	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	ENSMUSG00000038594|Gm9766	centrosomal protein 85-like	protein-coding	0.000000	0.407960	
mm_111668.1	chr12	103336848	103337048	-	1	NA	NA	NA	19053	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.010000	0.562189	
mm_51187.1	chr6	70956358	70956558	+	1	NA	NA	NA	-148	NM_001101464	232077	Mm.297656	NM_001101464	ENSMUSG00000055874	Foxi3	-	forkhead box I3	protein-coding	0.095000	0.691542	
mm_168759.1	chr12	118178817	118179017	+	1	NA	NA	NA	20126	NM_010060	13411	Mm.390540	NM_010060	ENSMUSG00000018581	Dnah11	Dnahc11|b2b1203Clo|b2b1279Clo|b2b1289Clo|b2b1727Clo|b2b598Clo|iv|lrd	dynein, axonemal, heavy chain 11	protein-coding	0.010000	0.432836	
mm_411.1	chr1	34215228	34215428	+	1	NA	NA	NA	54998	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.020000	0.522388	
mm_134123.1	chr16	10313847	10314047	-	1	NA	NA	NA	21	NM_007929	13731	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	0.100000	0.776119	
mm_119586.1	chr14	50927117	50927317	+	1	NA	NA	NA	2268	NM_009687	11792	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	0.000000	0.398010	
mm_75627.1	chr8	64692864	64693064	-	1	NA	NA	NA	145	NM_013494	12876	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|R74677|fat	carboxypeptidase E	protein-coding	0.105000	0.716418	
mm_94797.1	chr11	22973130	22973330	+	1	NA	NA	NA	1225	NM_011663	22183	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.070000	0.597015	
mm_56037.1	chr6	86669018	86669218	-	1	NA	NA	NA	41	NM_010751	17119	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.140000	0.781095	
mm_142692.1	chr17	47768675	47768875	-	1	NA	NA	NA	-16969	NM_011549	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.030000	0.606965	
mm_33354.1	chr4	129458251	129458451	+	1	NA	NA	NA	-3328	NM_133889	100383	Mm.17918	NM_133889	ENSMUSG00000040859	Bsdc1	1110063F24Rik|AW011758	BSD domain containing 1	protein-coding	0.010000	0.482587	-77(GCTCTAATAGGC,+,0.00)
mm_117483.1	chr13	77135406	77135606	-	1	NA	NA	NA	-30	NM_001081353	72371	Mm.81475	NM_028215	ENSMUSG00000071252	2210408I21Rik	-	RIKEN cDNA 2210408I21 gene	protein-coding	0.095000	0.611940	
mm_145712.1	chr18	62949973	62950173	+	1	NA	NA	NA	27746	NM_133237	494504	Mm.391102	NM_133237	ENSMUSG00000071847	Apcdd1	AB023957|AU041258|Drapc1|EIG180	adenomatosis polyposis coli down-regulated 1	protein-coding	0.060000	0.597015	
mm_172004.1	chr6	108565584	108565784	-	1	NA	NA	NA	57483	NR_040757	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.060000	0.542289	-34(TGCCTTAAAAGT,-,0.00)
mm_130455.1	chr15	98567468	98567668	-	1	NA	NA	NA	68	NM_009833	12455	Mm.29941	NM_009833	ENSMUSG00000011960	Ccnt1	2810478G24Rik|AI115585|CycT1	cyclin T1	protein-coding	0.075000	0.567164	
mm_164271.1	chr15	101469277	101469477	+	1	NA	NA	NA	-4101	NM_010667	16679	Mm.383183	NM_010667	ENSMUSG00000067614	Krt86	5430421N21Rik|AI325212|Khb4|Krt2-10|Krt2-11|MHb4	keratin 86	protein-coding	0.010000	0.537313	-94(CCATTTCTAGGG,+,0.00)
mm_124529.1	chr14	122233531	122233731	-	1	NA	NA	NA	7	NR_015532	68245	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.040000	0.601990	
mm_24557.1	chr3	93443471	93443671	+	1	NA	NA	NA	1241	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.045000	0.527363	
mm_92766.1	chr10	81128967	81129167	-	1	NA	NA	NA	-7204	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.045000	0.606965	
mm_142688.1	chr17	47734378	47734578	-	1	NA	NA	NA	-2559	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.010000	0.502488	
mm_55809.1	chr6	82939618	82939818	-	1	NA	NA	NA	51	NM_001308374	20355	Mm.270543	NM_011350	ENSMUSG00000000627	Sema4f	Sema W	sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain	protein-coding	0.080000	0.621891	
mm_132171.1	chr16	32312443	32312643	+	1	NA	NA	NA	-19709	NM_177633	224111	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	0.015000	0.517413	-69(CCCTTTAAACTG,+,0.00)
mm_24315.1	chr3	89423291	89423491	+	1	NA	NA	NA	1770	NM_001113331	20416	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	0.020000	0.592040	
mm_81685.1	chr9	111118153	111118353	+	1	NA	NA	NA	142	NM_001164838	71268	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.150000	0.766169	
mm_9427.1	chr1	172482025	172482225	-	1	NA	NA	NA	-88	NM_001145800	93842	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	0.110000	0.701493	
mm_62343.1	chr7	100498081	100498281	+	1	NA	NA	NA	4823	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.045000	0.631841	
mm_153450.1	chr19	41031077	41031277	-	1	NA	NA	NA	1902	NM_009345	21673	Mm.25620	NM_009345	ENSMUSG00000025014	Dntt	Tdt	deoxynucleotidyltransferase, terminal	protein-coding	0.025000	0.557214	
mm_100145.1	chr11	115993008	115993208	+	1	NA	NA	NA	18383	NM_133663	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.020000	0.597015	
mm_123844.1	chr14	70659705	70659905	-	1	NA	NA	NA	-6721	NM_181345	328440	Mm.347749	NM_181345	ENSMUSG00000047911	Npm2	-	nucleophosmin/nucleoplasmin 2	protein-coding	0.040000	0.492537	
mm_2486.1	chr1	105990099	105990299	+	1	NA	NA	NA	-207	NM_001122676	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.070000	0.611940	
mm_95060.1	chr11	32454974	32455174	+	1	NA	NA	NA	-298	NM_173784	327900	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	0.125000	0.751244	
mm_164986.1	chr19	10555672	10555872	-	1	NA	NA	NA	-9	NM_001277860	68642	Mm.31236	NM_026798	ENSMUSG00000024667	Tmem216	1110017C22Rik|2810441K11Rik|4921533J23Rik|A930021F15Rik|AI482550	transmembrane protein 216	protein-coding	0.100000	0.671642	
mm_172596.1	chr8	15034527	15034727	-	1	NA	NA	NA	11451	NR_037972	434285	Mm.334425	NM_001007591	ENSMUSG00000049008	BB014433	-	expressed sequence BB014433	ncRNA	0.005000	0.497512	
mm_54622.1	chr6	38551910	38552110	-	1	NA	NA	NA	676	NM_001170848	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.085000	0.706468	
mm_56282.1	chr6	91411226	91411426	-	1	NA	NA	NA	43	NM_009527	22421	Mm.56964	NM_009527	ENSMUSG00000030093	Wnt7a	AI849442|Wnt-7a|px|tw	wingless-type MMTV integration site family, member 7A	protein-coding	0.135000	0.751244	
mm_14915.1	chr2	150786667	150786867	+	1	NA	NA	NA	-29	NM_153781	110078	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.085000	0.676617	
mm_285.1	chr1	21272284	21272484	+	1	NA	NA	NA	25928	NR_002858	241041	Mm.290634	NR_002858	ENSMUSG00000025936	Gm4956	EG241041	predicted gene 4956	pseudo	0.060000	0.572139	
mm_31588.1	chr4	57845153	57845353	+	1	NA	NA	NA	5	NM_001035532	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.040000	0.562189	-91(GGCCTTTTAGGG,-,0.00),-89(CCTTTTAGGGAA,+,0.00)
mm_1526.1	chr1	72832795	72832995	+	1	NA	NA	NA	7508	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.010000	0.477612	
mm_5197.1	chr1	13373785	13373985	-	1	NA	NA	NA	198	NM_008678	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.150000	0.791045	
mm_81503.1	chr9	110034508	110034708	+	1	NA	NA	NA	-17413	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.020000	0.477612	
mm_78768.1	chr9	43311017	43311217	+	1	NA	NA	NA	354	NM_023655	72169	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	0.025000	0.592040	
mm_168031.1	chrY	90738511	90738711	-	1	NA	NA	NA	16439	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.487562	
mm_133625.1	chr16	91563439	91563639	+	1	NA	NA	NA	16445	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.015000	0.402985	
mm_38238.1	chr4	136180408	136180608	-	1	NA	NA	NA	-274	NM_001305399	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.040000	0.572139	
mm_118474.1	chr14	11603958	11604158	+	1	NA	NA	NA	50505	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.000000	0.378109	
mm_135967.1	chr16	74866995	74867195	-	1	NA	NA	NA	-456183	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.005000	0.308458	
mm_31941.1	chr4	86577010	86577210	+	1	NA	NA	NA	1437	NM_178376	68441	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	0.010000	0.388060	41(GAGTATTAAAGC,-,0.00)
mm_52123.1	chr6	97941102	97941302	+	1	NA	NA	NA	11385	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.040000	0.587065	
mm_150763.1	chr19	44241801	44242001	+	1	NA	NA	NA	38613	NM_024450	30049	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	0.010000	0.383085	
mm_142168.1	chr17	36168421	36168621	-	1	NA	NA	NA	16	NM_001081032	667977	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0.065000	0.626866	
mm_50394.1	chr6	48708263	48708463	+	1	NA	NA	NA	-119	NM_153175	231931	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	0.015000	0.452736	
mm_6583.1	chr1	75236172	75236372	-	1	NA	NA	NA	-151	NM_020266	56812	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.055000	0.552239	67(GCCTCTAAAAGT,-,0.00),68(CCTCTAAAAGTG,+,0.00)
mm_144752.1	chr18	35703117	35703317	+	1	NA	NA	NA	-73	NM_029669	76594	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	0.090000	0.616915	
mm_65541.1	chr7	26939284	26939484	-	1	NA	NA	NA	2	NM_001101467	233005	Mm.291574	NM_001101467	ENSMUSG00000091867	Cyp2a22	EG233005	cytochrome P450, family 2, subfamily a, polypeptide 22	protein-coding	0.010000	0.527363	
mm_77906.1	chr9	7349067	7349267	+	1	NA	NA	NA	1793	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.497512	
mm_8916.1	chr1	163313428	163313628	-	1	NA	NA	NA	122	NM_011127	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.020000	0.507463	
mm_37191.1	chr4	117494887	117495087	-	1	NA	NA	NA	2065	NM_025739	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.065000	0.666667	
mm_66733.1	chr7	46667210	46667410	-	1	NA	NA	NA	67	NM_001136084	21990	Mm.248684	NM_009414	ENSMUSG00000040046	Tph1	Tph	tryptophan hydroxylase 1	protein-coding	0.020000	0.542289	-100(TCCTATAAGAGG,-,0.00),-65(CTCTTTAAACTC,+,0.00)
mm_112516.1	chr13	9093865	9094065	+	1	NA	NA	NA	84	NM_172585	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.110000	0.671642	
mm_27932.1	chr3	79567681	79567881	-	1	NA	NA	NA	-102	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.160000	0.786070	
mm_103989.1	chr11	84829028	84829228	-	1	NA	NA	NA	-50	NR_046281	74995	Mm.84413	NR_046281	ENSMUSG00000086799	4930502E09Rik	-	RIKEN cDNA 4930502E09 gene	ncRNA	0.110000	0.716418	
mm_162307.1	chr1	36883198	36883398	+	1	NA	NA	NA	56229	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.000000	0.507463	
mm_76210.1	chr8	83442432	83442632	-	1	NA	NA	NA	130	NM_001285992	56367	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	0.105000	0.691542	
mm_132047.1	chr16	29209617	29209817	+	1	NA	NA	NA	22	NM_013751	27281	Mm.103650	NM_013751	ENSMUSG00000022525	Hrasls	2810012B06Rik|A-C1|HRSL1|Hrasrs	HRAS-like suppressor	protein-coding	0.010000	0.522388	
mm_88162.1	chr10	69706222	69706422	+	1	NA	NA	NA	172614	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.035000	0.502488	
mm_51629.1	chr6	85464779	85464979	+	1	NA	NA	NA	-12909	NR_028081	73327	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	0.010000	0.472637	
mm_59104.1	chr7	19749823	19750023	+	1	NA	NA	NA	-350	NM_001159724	19294	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.030000	0.606965	
mm_7648.1	chr1	128299870	128300070	-	1	NA	NA	NA	28348	NM_001081078	226413	Mm.26930	NM_001081078	ENSMUSG00000026354	Lct	Gm100|LAC|LPH|Lphl	lactase	protein-coding	0.015000	0.487562	
mm_124971.1	chr15	18923239	18923439	+	1	NA	NA	NA	103010	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0.000000	0.313433	
mm_135723.1	chr16	55819530	55819730	-	1	NA	NA	NA	2508	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.035000	0.557214	
mm_81433.1	chr9	109095305	109095505	+	1	NA	NA	NA	-31	NM_172775	235611	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.145000	0.786070	
mm_24060.1	chr3	87915202	87915402	+	1	NA	NA	NA	-4242	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.005000	0.512438	
mm_16478.1	chr2	180825603	180825803	+	1	NA	NA	NA	-48803	NM_080641	140489	Mm.134062	NM_080641	ENSMUSG00000045493	Bhlhe23	A930001L02Rik|BETA4|Beta3b|Bhlhb4	basic helix-loop-helix family, member e23	protein-coding	0.010000	0.522388	1(GCATTTAAAAGC,+,0.00),1(GCATTTAAAAGC,-,0.00)
mm_50791.1	chr6	54039654	54039854	+	1	NA	NA	NA	-178	NM_001163640	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.115000	0.741294	
mm_64024.1	chr7	140763719	140763919	+	1	NA	NA	NA	-13	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.035000	0.517413	
mm_156014.1	chrX	107089298	107089498	+	1	NA	NA	NA	63	NM_172435	78826	Mm.74639	NM_172435	ENSMUSG00000050921	P2ry10	5830408N17Rik|Lypsr2|P2Y10	purinergic receptor P2Y, G-protein coupled 10	protein-coding	0.000000	0.422886	
mm_172626.1	chr8	20397912	20398112	-	1	NA	NA	NA	26802	NR_028428	381598	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	0.005000	0.467662	
mm_46016.1	chr5	90903029	90903229	-	1	NA	NA	NA	-770	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.025000	0.542289	
mm_6016.1	chr1	59014036	59014236	-	1	NA	NA	NA	40565	NM_172656	227154	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	0.000000	0.318408	-99(GCTTATAAGGCA,+,0.00)
mm_109420.1	chr12	110497567	110497767	+	1	NA	NA	NA	11928	NM_012023	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.025000	0.532338	
mm_18985.1	chr2	76856237	76856437	-	1	NA	NA	NA	126210	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.010000	0.417910	
mm_102723.1	chr11	67215852	67216052	-	1	NA	NA	NA	15838	NM_030679	17879	Mm.477065	NM_030679	ENSMUSG00000056328	Myh1	A530084A17Rik|IId|IId/x|MHC-2X/D|MHC2X/D|MYHC-IIX|MdMs|MyHC-IId/x|MyHC-IIx/d|Myhs-f|Myhs-f2|Myhsf2	myosin, heavy polypeptide 1, skeletal muscle, adult	protein-coding	0.025000	0.507463	
mm_154370.1	chrM	9778	9978	+	1	NA	NA	NA	NA	NA									0.010000	0.333333	
mm_126937.1	chr15	91838227	91838427	+	1	NA	NA	NA	1	NM_207243	239611	Mm.486225	NM_207243		Muc19	MUC-19|sld	mucin 19	protein-coding	0.020000	0.512438	-32(GCCTATAAATAC,-,0.00)
mm_16576.1	chr2	3474957	3475157	-	1	NA	NA	NA	-71	NR_027509	64707	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 homolog 2 (Drosophila)	protein-coding	0.115000	0.711443	
mm_37456.1	chr4	123432141	123432341	-	1	NA	NA	NA	-20330	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.030000	0.482587	38(CCCTTAATAAGC,+,0.00)
mm_141294.1	chr17	28079704	28079904	-	1	NA	NA	NA	780	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.055000	0.626866	
mm_91729.1	chr10	45289595	45289795	-	1	NA	NA	NA	390	NM_024286	78977	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	0.105000	0.716418	
mm_94513.1	chr11	8589715	8589915	+	1	NA	NA	NA	74720	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.010000	0.477612	13(GCTTCTAAAAGA,-,0.00)
mm_74608.1	chr8	12466799	12466999	-	1	NA	NA	NA	71380	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.010000	0.437811	
mm_77912.1	chr9	7349942	7350142	+	1	NA	NA	NA	2668	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.422886	
mm_102885.1	chr11	69410926	69411126	-	1	NA	NA	NA	2649	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.075000	0.651741	
mm_157198.1	chrX	12137049	12137249	-	1	NA	NA	NA	23197	NR_045434	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.060000	0.636816	
mm_136162.1	chr16	88562923	88563123	-	1	NA	NA	NA	160	NM_018778	54420	Mm.25836	NM_018778	ENSMUSG00000050520	Cldn8	AI648025	claudin 8	protein-coding	0.035000	0.552239	
mm_57182.1	chr6	122848577	122848777	-	1	NA	NA	NA	7480	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.000000	0.313433	
mm_12923.1	chr2	84988096	84988296	+	1	NA	NA	NA	-19	NM_016914	53856	Mm.19943	NM_016914	ENSMUSG00000027072	Prg3	MBP2|MBPH	proteoglycan 3	protein-coding	0.005000	0.532338	
mm_142757.1	chr17	48963790	48963990	-	1	NA	NA	NA	31308	NM_027452	70530	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0.025000	0.517413	
mm_156735.1	chrX	159942796	159942996	+	1	NA	NA	NA	203	NM_001290664	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.000000	0.447761	-64(TTCCTTAAAAGG,-,0.00),-63(TCCTTAAAAGGG,+,0.00),-62(CCTTAAAAGGGA,+,0.00)
mm_139335.1	chr17	49449314	49449514	+	1	NA	NA	NA	21050	NM_020042	56738	Mm.22256	NM_020042	ENSMUSG00000064120	Mocs1	3110045D15Rik|AI043170|AW536397	molybdenum cofactor synthesis 1	protein-coding	0.025000	0.601990	
mm_168937.1	chr12	69346256	69346456	-	1	NA	NA	NA	10820	NM_025441	66244	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0.005000	0.348259	5(GACTATTTGAGG,-,0.00)
mm_62848.1	chr7	114317554	114317754	+	1	NA	NA	NA	-41538	NM_011965	26440	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.020000	0.512438	
mm_115144.1	chr13	104849510	104849710	+	1	NA	NA	NA	14283	NM_029984	77803	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik	family with sequence similarity 159, member B	protein-coding	0.010000	0.442786	
mm_1119.1	chr1	59912984	59913184	+	1	NA	NA	NA	78	NM_001037725	72750	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0.120000	0.756219	
mm_70939.1	chr8	25911579	25911779	+	1	NA	NA	NA	62056	NM_008432	16532	Mm.289679	NM_008432	ENSMUSG00000031576	Kcnu1	Kcnma3|Slo3|mSlo3	potassium channel, subfamily U, member 1	protein-coding	0.025000	0.482587	
mm_40974.1	chr5	77015889	77016089	+	1	NA	NA	NA	-34	NM_027970	71868	Mm.151092	NM_027970	ENSMUSG00000029248	Thegl	1700023E05Rik	theg spermatid protein like	protein-coding	0.105000	0.711443	
mm_62470.1	chr7	101818214	101818414	+	1	NA	NA	NA	1	NM_008887	11859	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	0.135000	0.756219	-34(CGCGTTAAAAGG,-,0.00)
mm_54449.1	chr6	34745931	34746131	-	1	NA	NA	NA	-34401	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.015000	0.482587	
mm_66880.1	chr7	58740335	58740535	-	1	NA	NA	NA	82233	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.025000	0.517413	
mm_81914.1	chr9	120110284	120110484	+	1	NA	NA	NA	-15	NM_144793	208638	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0.100000	0.651741	
mm_90607.1	chr10	128322641	128322841	+	1	NA	NA	NA	282	NM_019953	56530	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy FGF signaling regulator 2	protein-coding	0.070000	0.651741	
mm_47723.1	chr5	130016730	130016930	-	1	NA	NA	NA	7501	NM_133768	109900	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik	argininosuccinate lyase	protein-coding	0.015000	0.437811	-8(TTTTTTAAAGAC,+,0.00)
mm_147577.1	chr18	56431739	56431939	-	1	NA	NA	NA	-293	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.045000	0.597015	
mm_39706.1	chr5	27262129	27262329	+	1	NA	NA	NA	294	NM_001136060	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.025000	0.577114	
mm_58270.1	chr6	145341792	145341992	-	1	NA	NA	NA	-45733	NR_003625	381827	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	0.035000	0.398010	
mm_113507.1	chr13	37598624	37598824	+	1	NA	NA	NA	-227314	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.010000	0.482587	
mm_18167.1	chr2	45102386	45102586	-	1	NA	NA	NA	7791	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.015000	0.402985	
mm_144267.1	chr18	11053266	11053466	+	1	NA	NA	NA	-799	NR_105023	68434	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0.050000	0.587065	
mm_39383.1	chr5	13125467	13125667	+	1	NA	NA	NA	-271217	NM_001243072	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.020000	0.492537	-94(CCTCTTAAACCA,+,0.00),-70(GCTCTAATAGAG,+,0.00)
mm_171118.1	chr3	140235399	140235599	+	1	NA	NA	NA	207250	NR_105798	102465198		NR_105798	ENSMUSG00000099169	Mir7j	Gm27716|Mirlet7j|mmu-let-7j	microRNA 7j	ncRNA	0.005000	0.497512	
mm_74091.1	chr8	122567911	122568111	+	1	NA	NA	NA	-4	NM_026014	67177	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0.115000	0.636816	
mm_60325.1	chr7	44228250	44228450	+	1	NA	NA	NA	2990	NM_001320331	16612	Mm.142722	NM_010639	ENSMUSG00000063903	Klk1	0610007D04Rik|KAL-B|Kal|Klk1b6|Klk6|mGk-6	kallikrein 1	protein-coding	0.010000	0.532338	
mm_22125.1	chr2	170349142	170349342	-	1	NA	NA	NA	-7119	NR_040610	73303	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.055000	0.587065	
mm_1365.1	chr1	66412862	66413062	+	1	NA	NA	NA	-55485	NM_175510	329178	Mm.44798	NM_175510	ENSMUSG00000055567	Unc80	C030018G13Rik|C230061B10Rik|UNC-80	unc-80, NALCN activator	protein-coding	0.005000	0.497512	
mm_136040.1	chr16	78265865	78266065	-	1	NA	NA	NA	-10511	NR_045698	100503619	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.025000	0.462687	-23(CTCCTTTTAAGC,-,0.00),-21(CCTTTTAAGCCT,+,0.00)
mm_582.1	chr1	39367780	39367980	+	1	NA	NA	NA	29	NM_001252218	114641	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.100000	0.631841	
mm_4017.1	chr1	165655178	165655378	+	1	NA	NA	NA	-20737	NM_001083897	68481	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.015000	0.577114	
mm_99909.1	chr11	109803415	109803615	+	1	NA	NA	NA	24531	NM_027038	69324	Mm.31700	NM_027038	ENSMUSG00000020617	1700012B07Rik	1700069D21Rik	RIKEN cDNA 1700012B07 gene	protein-coding	0.005000	0.542289	
mm_78212.1	chr9	21499406	21499606	+	1	NA	NA	NA	-2942	NR_029585	387194		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.005000	0.517413	
mm_105605.1	chr11	106781792	106781992	-	1	NA	NA	NA	867	NR_037224	100526469		NR_037224	ENSMUSG00000093273	Mir3064	mir-3064|mmu-mir-3064	microRNA 3064	ncRNA	0.015000	0.388060	
mm_157307.1	chrX	20931372	20931572	-	1	NA	NA	NA	83	NM_008823	18636	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	0.005000	0.542289	
mm_167864.1	chrX	20559336	20559536	-	1	NA	NA	NA	9618	NM_009060	19733	Mm.2118	NM_009060	ENSMUSG00000023070	Rgn	AI265316|GNL|SMP30	regucalcin	protein-coding	0.010000	0.452736	
mm_160745.1	chr10	81098797	81098997	-	1	NA	NA	NA	-25	NM_145365	208677	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	0.025000	0.601990	
mm_112785.1	chr13	20111410	20111610	+	1	NA	NA	NA	21003	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.005000	0.472637	
mm_143068.1	chr17	57021937	57022137	-	1	NA	NA	NA	9470	NM_010613	16549	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0.010000	0.641791	
mm_163014.1	chr11	44735218	44735418	+	1	NA	NA	NA	117218	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.000000	0.442786	
mm_52596.1	chr6	117168475	117168675	+	1	NA	NA	NA	40	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.100000	0.706468	
mm_42738.1	chr5	120649242	120649442	+	1	NA	NA	NA	154	NM_001281999	19415	Mm.41209	NM_013832	ENSMUSG00000029602	Rasal1	MRASAL	RAS protein activator like 1 (GAP1 like)	protein-coding	0.060000	0.651741	
mm_18729.1	chr2	72978927	72979127	-	1	NA	NA	NA	254	NM_001098425	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.135000	0.726368	
mm_132968.1	chr16	50783354	50783554	+	1	NA	NA	NA	45	NR_131005	78639	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0.025000	0.512438	
mm_159344.1	chr3	62605021	62605221	-	1	NA	NA	NA	19	NM_177346	229357	Mm.95181	NM_177346	ENSMUSG00000043441	Gpr149	9630018L10Rik|Ieda|PGR10|R35	G protein-coupled receptor 149	protein-coding	0.000000	0.527363	
mm_111883.1	chr12	108179188	108179388	-	1	NA	NA	NA	-4	NM_028262	52690	Mm.159185	NM_028262	ENSMUSG00000056770	Setd3	2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e	SET domain containing 3	protein-coding	0.145000	0.805970	
mm_140919.1	chr17	24171788	24171988	-	1	NA	NA	NA	-2459	NM_009729	11984	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0.005000	0.517413	
mm_163606.1	chr13	49215742	49215942	-	1	NA	NA	NA	184	NM_026738	68480	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.145000	0.766169	
mm_114881.1	chr13	94194217	94194417	+	1	NA	NA	NA	90964	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.020000	0.467662	
mm_30113.1	chr3	139075024	139075224	-	1	NA	NA	NA	77	NM_145544	229877	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.145000	0.791045	
mm_110027.1	chr12	16800814	16801014	-	1	NA	NA	NA	-28	NM_015764	268527	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	0.080000	0.671642	
mm_128047.1	chr15	25445538	25445738	-	1	NA	NA	NA	31446	NR_027376	432939	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0.015000	0.611940	
mm_141260.1	chr17	27623241	27623441	-	1	NA	NA	NA	111	NM_019837	56409	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0.175000	0.805970	
mm_160412.1	chr8	75033627	75033827	+	1	NA	NA	NA	41	NM_011622	21968	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.110000	0.711443	
mm_28863.1	chr3	97297784	97297984	-	1	NA	NA	NA	-11372	NR_105813	102465206		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	0.015000	0.502488	
mm_64083.1	chr7	140943499	140943699	+	1	NA	NA	NA	2018	NM_145387	212974	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0.020000	0.626866	
mm_7362.1	chr1	106712272	106712472	-	1	NA	NA	NA	1918	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.025000	0.567164	
mm_147924.1	chr18	65935862	65936062	-	1	NA	NA	NA	3127	NM_013833	19434	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	0.045000	0.527363	89(GGCCTTTAAAGT,-,0.00)
mm_162193.1	chrX	113297458	113297658	+	1	NA	NA	NA	48	NM_001289733	93837	Mm.79760	NM_033605	ENSMUSG00000025592	Dach2	9430028N04Rik	dachshund 2 (Drosophila)	protein-coding	0.080000	0.542289	
mm_110311.1	chr12	33284447	33284647	-	1	NA	NA	NA	-17968	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.005000	0.457711	-33(TTCTATAAAAAC,-,0.00)
mm_143951.1	chr17	86810912	86811112	-	1	NA	NA	NA	57148	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.030000	0.487562	
mm_3106.1	chr1	134494650	134494850	+	1	NA	NA	NA	90	NM_145510	98710	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	0.090000	0.646766	
mm_87062.1	chr10	28863483	28863683	+	1	NA	NA	NA	59924	NR_033601	114676	Mm.390292	NR_033601		4930519F09Rik	-	pyruvate dehydrogenase E1 alpha 1 pseudogene	pseudo	0.000000	0.363184	
mm_130663.1	chr15	100667505	100667705	-	1	NA	NA	NA	1895	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.015000	0.412935	
mm_12722.1	chr2	78304587	78304787	+	1	NA	NA	NA	67140	NM_177843	329436	Mm.235448	NM_177843		Gm14461	A830093M07|OTTMUSG00000016703	predicted gene 14461	protein-coding	0.000000	0.368159	
mm_33268.1	chr4	127522345	127522545	+	1	NA	NA	NA	-164281	NM_010291	14622	Mm.26859	NM_010291	ENSMUSG00000042357	Gjb5	Cnx31.1|Cx31.1|Gjb-5	gap junction protein, beta 5	protein-coding	0.010000	0.497512	
mm_81457.1	chr9	109833082	109833282	+	1	NA	NA	NA	388	NM_018757	54369	Mm.12951	NM_018757	ENSMUSG00000032478	Nme6	nm23-M6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding	0.015000	0.487562	
mm_108976.1	chr12	102730609	102730809	+	1	NA	NA	NA	12952	NM_001142937	64113	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	0.010000	0.532338	
mm_40632.1	chr5	64829790	64829990	+	1	NA	NA	NA	26367	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.015000	0.527363	
mm_97121.1	chr11	74839142	74839342	+	1	NA	NA	NA	8318	NM_010813	17428	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.020000	0.412935	
mm_85577.1	chr9	107289712	107289912	-	1	NA	NA	NA	65	NM_178907	102626	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0.075000	0.676617	-36(GGCCCTTTAAGG,-,0.00),-34(CCCTTTAAGGTT,+,0.00)
mm_136156.1	chr16	88167339	88167539	-	1	NA	NA	NA	122819	NM_146072	14805	Mm.5134	NM_010348	ENSMUSG00000022935	Grik1	A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1	glutamate receptor, ionotropic, kainate 1	protein-coding	0.000000	0.308458	
mm_9281.1	chr1	171634453	171634653	-	1	NA	NA	NA	7347	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.005000	0.358209	61(CCTTTTATATTT,+,0.00),80(GCCTTTATAGAC,+,0.00),80(GCCTTTATAGAC,-,0.00)
mm_34782.1	chr4	154142273	154142473	+	1	NA	NA	NA	1	NM_021499	59002	Mm.46508	NM_021499	ENSMUSG00000029029	Wrap73	2610044M17Rik|5330425N03Rik|Dd57|Wdr8	WD repeat containing, antisense to Trp73	protein-coding	0.090000	0.666667	-91(GCCCCTTTAAGA,-,0.00),-88(CCTTTAAGACTC,+,0.00)
mm_20284.1	chr2	126897580	126897780	-	1	NA	NA	NA	4705	NR_106202	102466258		NR_106202	ENSMUSG00000098896	Mir3473g	Gm27751|mmu-mir-3473g	microRNA 3473g	ncRNA	0.025000	0.442786	
mm_62229.1	chr7	98533201	98533401	+	1	NA	NA	NA	39079	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.010000	0.487562	
mm_149932.1	chr19	26770841	26771041	+	1	NA	NA	NA	22538	NM_026003	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.015000	0.447761	
mm_19077.1	chr2	77817344	77817544	-	1	NA	NA	NA	-628	NM_178723	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.025000	0.398010	
mm_85903.1	chr9	111056217	111056417	-	1	NA	NA	NA	927	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.055000	0.557214	
mm_10974.1	chr2	25707023	25707223	+	1	NA	NA	NA	244	NM_023326	107771	Mm.330057	NM_023326	ENSMUSG00000049086	Bmyc	2900002K07Rik|AW060705|Mycb	brain expressed myelocytomatosis oncogene	protein-coding	0.115000	0.701493	
mm_3757.1	chr1	156044152	156044352	+	1	NA	NA	NA	3391	NM_022329	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.025000	0.447761	
mm_24538.1	chr3	93279510	93279710	+	1	NA	NA	NA	-40139	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.010000	0.398010	
mm_60101.1	chr7	35186321	35186521	+	1	NA	NA	NA	36	NM_017394	53896	Mm.35567	NM_017394	ENSMUSG00000030495	Slc7a10	AL024237|Asc-1|D7Bwg0847e	solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	protein-coding	0.125000	0.751244	
mm_146861.1	chr18	24529926	24530126	-	1	NA	NA	NA	178	NM_144861	225283	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	0.105000	0.651741	
mm_50017.1	chr6	41113488	41113688	+	1	NA	NA	NA	-78079	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.010000	0.502488	
mm_155632.1	chrX	84772666	84772866	+	1	NA	NA	NA	-275529	NM_001314038	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.020000	0.432836	-89(GACTATTAAAGC,-,0.00),20(GCATTTTAAAGC,-,0.00)
mm_27384.1	chr3	50628284	50628484	-	1	NA	NA	NA	-184771	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.015000	0.497512	
mm_8644.1	chr1	156430374	156430574	-	1	NA	NA	NA	-9559	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.010000	0.432836	
mm_115318.1	chr13	112367795	112367995	+	1	NA	NA	NA	79377	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.025000	0.522388	36(GTCTTTAAGAAG,-,0.00)
mm_27862.1	chr3	79158597	79158797	-	1	NA	NA	NA	-12822	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.015000	0.532338	
mm_89377.1	chr10	88885837	88886037	+	1	NA	NA	NA	-55	NM_145423	216225	Mm.77381	NM_145423	ENSMUSG00000020062	Slc5a8	Ait|SMCT	solute carrier family 5 (iodide transporter), member 8	protein-coding	0.075000	0.646766	
mm_65778.1	chr7	28766357	28766557	-	1	NA	NA	NA	187	NM_001306222	18036	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	0.070000	0.621891	-80(GGGTATATGAGG,-,0.00)
mm_92698.1	chr10	80701745	80701945	-	1	NA	NA	NA	-25	NM_172457	208228	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.125000	0.731343	-85(TTCCCTTTAAGG,-,0.00),-84(TCCCTTTAAGGG,-,0.00),-83(CCCTTTAAGGGA,+,0.00),-82(CCTTTAAGGGAA,+,0.00)
mm_116274.1	chr13	34715390	34715590	-	1	NA	NA	NA	-24152	NM_138746	108161	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.015000	0.532338	
mm_24012.1	chr3	87408342	87408542	+	1	NA	NA	NA	-27340	NM_183222	329693	Mm.331122	NM_183222	ENSMUSG00000048031	Fcrl5	Fcrh3|mBXMH2	Fc receptor-like 5	protein-coding	0.015000	0.487562	
mm_163653.1	chr13	69611466	69611666	+	1	NA	NA	NA	-103	NM_175283	78925	Mm.451912	NM_175283	ENSMUSG00000021594	Srd5a1	0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1	steroid 5 alpha-reductase 1	protein-coding	0.080000	0.656716	
mm_26695.1	chr3	157534032	157534232	+	1	NA	NA	NA	-265	NM_017381	53861	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding	0.120000	0.691542	
mm_85751.1	chr9	108636376	108636576	-	1	NA	NA	NA	12904	NM_011790	23807	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.005000	0.398010	
mm_4927.1	chr1	191036734	191036934	+	1	NA	NA	NA	12	NM_029336	75558	Mm.383398	NM_029336	ENSMUSG00000057072	Spata45	1700022P22Rik	spermatogenesis associated 45	protein-coding	0.000000	0.457711	30(TGTTATTAAAGG,-,0.00)
mm_128889.1	chr15	73162130	73162330	-	1	NA	NA	NA	22717	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.005000	0.452736	
mm_38708.1	chr4	145215559	145215759	-	1	NA	NA	NA	-20654	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.005000	0.547264	
mm_13695.1	chr2	117121071	117121271	+	1	NA	NA	NA	100	NM_033524	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.165000	0.796020	
mm_72278.1	chr8	75100146	75100346	+	1	NA	NA	NA	6628	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.005000	0.527363	
mm_46942.1	chr5	114823384	114823584	-	1	NA	NA	NA	-16	NM_181075	330173	Mm.482205	NM_181075	ENSMUSG00000092486	2610524H06Rik	-	RIKEN cDNA 2610524H06 gene	protein-coding	0.095000	0.696517	
mm_97436.1	chr11	78176648	78176848	+	1	NA	NA	NA	-82	NM_080849	140859	Mm.23788	NM_080849	ENSMUSG00000017405	Nek8	4632401F23Rik|b2b1449Clo|jck	NIMA (never in mitosis gene a)-related expressed kinase 8	protein-coding	0.070000	0.562189	
mm_33377.1	chr4	129515725	129515925	+	1	NA	NA	NA	2244	NM_010807	17357	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0.000000	0.383085	39(CTTTTAATGGCC,+,0.00)
mm_153978.1	chr19	47864549	47864749	-	1	NA	NA	NA	-896	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.005000	0.437811	
mm_79689.1	chr9	60482273	60482473	+	1	NA	NA	NA	28662	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.020000	0.552239	
mm_13828.1	chr2	119288648	119288848	+	1	NA	NA	NA	6	NM_172269	228545	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	0.060000	0.597015	
mm_158763.1	chrX	166510350	166510550	-	1	NA	NA	NA	28	NM_001007577	245695	Mm.336318	NM_001007577	ENSMUSG00000051224	Tceanc	A630018P17Rik|Gm390	transcription elongation factor A (SII) N-terminal and central domain containing	protein-coding	0.110000	0.701493	
mm_147386.1	chr18	43792777	43792977	-	1	NA	NA	NA	1	NM_001033280	225443	Mm.100304	NM_001033280	ENSMUSG00000071858	Gm94	-	predicted gene 94	protein-coding	0.010000	0.482587	
mm_15674.1	chr2	163491616	163491816	+	1	NA	NA	NA	-602	NM_001099331	100043899	Mm.442535	NM_001099331	ENSMUSG00000078949	R3hdml	OTTMUSG00000001070	R3H domain containing-like	protein-coding	0.010000	0.597015	
mm_79951.1	chr9	66061270	66061470	+	1	NA	NA	NA	1201	NM_011149	19035	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	0.000000	0.492537	
mm_134202.1	chr16	11134468	11134668	-	1	NA	NA	NA	-36	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.135000	0.711443	
mm_43332.1	chr5	135009740	135009940	+	1	NA	NA	NA	384	NR_033794	68758	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.065000	0.616915	
mm_42012.1	chr5	108077859	108078059	+	1	NA	NA	NA	-206	NM_001253878	17765	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0.010000	0.477612	
mm_84586.1	chr9	70032346	70032546	-	1	NA	NA	NA	5642	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.005000	0.422886	
mm_41946.1	chr5	105731800	105732000	+	1	NA	NA	NA	31090	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.040000	0.616915	
mm_87702.1	chr10	59879550	59879750	+	1	NA	NA	NA	59	NM_019965	56709	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.110000	0.691542	
mm_3764.1	chr1	156213049	156213249	+	1	NA	NA	NA	-8123	NM_177838	329274	Mm.150857	NM_177838	ENSMUSG00000015484	Fam163a	A230106N23Rik	family with sequence similarity 163, member A	protein-coding	0.010000	0.482587	
mm_112413.1	chr13	3652680	3652880	+	1	NA	NA	NA	18748	NM_001267724	142688	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	0.000000	0.447761	
mm_75159.1	chr8	36280743	36280943	-	1	NA	NA	NA	-31327	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.020000	0.457711	
mm_74602.1	chr8	11678618	11678818	-	1	NA	NA	NA	32	NM_024271	76413	Mm.440041	NM_024271	ENSMUSG00000031509	1700016D06Rik	-	RIKEN cDNA 1700016D06 gene	protein-coding	0.020000	0.537313	
mm_25460.1	chr3	108537453	108537653	+	1	NA	NA	NA	-31	NM_029314	75504	Mm.271255	NM_029314	ENSMUSG00000027886	1700013F07Rik	-	RIKEN cDNA 1700013F07 gene	protein-coding	0.040000	0.532338	
mm_150071.1	chr19	29386583	29386783	+	1	NA	NA	NA	19245	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.527363	
mm_151240.1	chr19	53832545	53832745	+	1	NA	NA	NA	-59586	NM_011050	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.030000	0.557214	
mm_60218.1	chr7	43546354	43546554	+	1	NA	NA	NA	-13283	NM_021293	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.015000	0.467662	
mm_96971.1	chr11	70649817	70650017	+	1	NA	NA	NA	2630	NM_027445	70510	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0.010000	0.502488	
mm_16099.1	chr2	169005940	169006140	+	1	NA	NA	NA	27771	NR_040326	75508	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.025000	0.567164	
mm_38915.1	chr4	150000186	150000386	-	1	NA	NA	NA	2950	NM_001291004	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.035000	0.542289	
mm_30308.1	chr3	149445173	149445373	-	1	NA	NA	NA	170536	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.020000	0.482587	-94(CCTTTTAAATGT,+,0.00)
mm_139150.1	chr17	47538546	47538746	+	1	NA	NA	NA	33595	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.000000	0.308458	
mm_86698.1	chr10	18475736	18475936	+	1	NA	NA	NA	5855	NM_001163592	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.010000	0.358209	-6(TTTTTTAAAAGC,-,0.00),-5(TTTTTAAAAGCC,+,0.00),74(GTCTTTTAAAGT,-,0.00),75(TCTTTTAAAGTC,+,0.00)
mm_117681.1	chr13	94203497	94203697	-	1	NA	NA	NA	81684	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.015000	0.398010	
mm_103751.1	chr11	80779720	80779920	-	1	NA	NA	NA	205	NM_177390	338367	Mm.151948	NM_177390	ENSMUSG00000035441	Myo1d	9930104H07Rik|AW544947|D11Ertd9e|myosin-1d	myosin ID	protein-coding	0.105000	0.701493	
mm_144897.1	chr18	37143580	37143780	+	1	NA	NA	NA	-289	NM_001003672	353237	Mm.308500	NM_001003672	ENSMUSG00000102697	Pcdhac2	CNRc2	protocadherin alpha subfamily C, 2	protein-coding	0.100000	0.671642	
mm_85995.1	chr9	112216454	112216654	-	1	NA	NA	NA	707	NM_001177617	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.010000	0.422886	
mm_49590.1	chr6	30643494	30643694	+	1	NA	NA	NA	4376	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.010000	0.492537	
mm_67496.1	chr7	80757932	80758132	-	1	NA	NA	NA	45299	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.005000	0.358209	
mm_20856.1	chr2	148408017	148408217	-	1	NA	NA	NA	71	NM_009378	21824	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	0.050000	0.582090	
mm_143292.1	chr17	65884740	65884940	-	1	NA	NA	NA	83	NM_001198949	19765	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.125000	0.741294	
mm_32176.1	chr4	100776578	100776778	+	1	NA	NA	NA	-1	NM_198037	320508	Mm.151962	NM_198037	ENSMUSG00000028532	Cachd1	1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573	cache domain containing 1	protein-coding	0.095000	0.631841	
mm_159970.1	chr6	99162776	99162976	-	1	NA	NA	NA	103639	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.045000	0.636816	
mm_23581.1	chr3	63439154	63439354	+	1	NA	NA	NA	143159	NM_001289463	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.010000	0.402985	
mm_53685.1	chr6	142387174	142387374	+	1	NA	NA	NA	31	NM_025872	66964	Mm.3676	NM_025872	ENSMUSG00000030245	Golt1b	2310061A22Rik|AA407874|AU024291|CGI-141	golgi transport 1B	protein-coding	0.145000	0.716418	
mm_132643.1	chr16	40194626	40194826	+	1	NA	NA	NA	1292381	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.005000	0.378109	
mm_40871.1	chr5	74032169	74032369	+	1	NA	NA	NA	36142	NM_177561	69727	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.070000	0.542289	
mm_170702.1	chr2	137369717	137369917	-	1	NA	NA	NA	-253297	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.080000	0.666667	
mm_26689.1	chr3	156646535	156646735	+	1	NA	NA	NA	84841	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.000000	0.363184	-48(CTCTATTAAAGA,-,0.00)
mm_34570.1	chr4	150048185	150048385	+	1	NA	NA	NA	-20169	NR_029751	723848		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0.065000	0.582090	
mm_57975.1	chr6	135718604	135718804	-	1	NA	NA	NA	59791	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	0.005000	0.412935	
mm_154571.1	chrX	6945154	6945354	+	1	NA	NA	NA	71770	NM_177914	331374	Mm.392752	NM_177914	ENSMUSG00000062393	Dgkk	Gm360	diacylglycerol kinase kappa	protein-coding	0.000000	0.417910	
mm_69951.1	chr7	142372151	142372351	-	1	NA	NA	NA	8	NM_177265	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.140000	0.751244	
mm_166847.1	chr7	19696536	19696736	+	1	NA	NA	NA	1762	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.075000	0.661692	
mm_139255.1	chr17	47736972	47737172	+	1	NA	NA	NA	35	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.135000	0.771144	
mm_94387.1	chr11	5524697	5524897	+	1	NA	NA	NA	4156	NM_001271730	22433	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0.005000	0.492537	
mm_95519.1	chr11	52120818	52121018	+	1	NA	NA	NA	-5828	NR_037221	100526467		NR_037221	ENSMUSG00000092870	Mir3061	mir-3061|mmu-mir-3061	microRNA 3061	ncRNA	0.015000	0.348259	-64(CTGTTTTAATGG,-,0.00)
mm_82909.1	chr9	32959509	32959709	-	1	NA	NA	NA	-30643	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.000000	0.487562	
mm_85552.1	chr9	106685716	106685916	-	1	NA	NA	NA	0	NM_011573	21767	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.110000	0.751244	
mm_163251.1	chr11	108186730	108186930	+	1	NA	NA	NA	157058	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.005000	0.373134	
mm_115808.1	chr13	19358518	19358718	-	1	NA	NA	NA	37195	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.025000	0.597015	
mm_127316.1	chr15	100271591	100271791	+	1	NA	NA	NA	-9146	NM_183109	75002	Mm.261400	NM_183109	ENSMUSG00000045631	Tmprss12	4930478A21Rik	transmembrane (C-terminal) protease, serine 12	protein-coding	0.045000	0.597015	81(ACCTATTAAAAC,-,0.00)
mm_49970.1	chr6	40768765	40768965	+	1	NA	NA	NA	118629	NM_139296	194357	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0.000000	0.447761	
mm_108649.1	chr12	86060876	86061076	+	1	NA	NA	NA	18065	NM_009368	21809	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.005000	0.502488	
mm_81767.1	chr9	114401386	114401586	+	1	NA	NA	NA	391	NM_001200002	100504715	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	0.130000	0.726368	
mm_135936.1	chr16	74279234	74279434	-	1	NA	NA	NA	62733	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.000000	0.303483	-45(ACTTATATACAC,+,0.00)
mm_144511.1	chr18	24709218	24709418	+	1	NA	NA	NA	695	NM_001289655	225288	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0.100000	0.696517	
mm_102953.1	chr11	69662531	69662731	-	1	NA	NA	NA	18	NR_125917	24070	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	0.100000	0.691542	
mm_38515.1	chr4	141398640	141398840	-	1	NA	NA	NA	-34	NM_024412	12733	Mm.167900	NM_024412	ENSMUSG00000033770	Clcnka	C75963|CLC-K1|Clcnk1	chloride channel, voltage-sensitive Ka	protein-coding	0.030000	0.587065	
mm_142208.1	chr17	36988669	36988869	-	1	NA	NA	NA	735	NM_001115075	240095	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	0.065000	0.601990	
mm_88792.1	chr10	80629551	80629751	+	1	NA	NA	NA	-5	NM_001159591	103236	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.015000	0.611940	
mm_80365.1	chr9	75314122	75314322	+	1	NA	NA	NA	154	NM_138719	14697	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0.130000	0.706468	
mm_102880.1	chr11	69410347	69410547	-	1	NA	NA	NA	3228	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.040000	0.547264	
mm_11905.1	chr2	50394829	50395029	+	1	NA	NA	NA	98119	NR_040362	100502624	Mm.382825	NR_040361	ENSMUSG00000085862	Gm13483	OTTMUSG00000012382	predicted gene 13483	ncRNA	0.005000	0.283582	-4(TACTTTTAAAGC,-,0.00),-3(ACTTTTAAAGCT,+,0.00)
mm_31817.1	chr4	66841666	66841866	+	1	NA	NA	NA	14215	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.010000	0.393035	
mm_30525.1	chr4	3089681	3089881	+	1	NA	NA	NA	-82302	NM_001167534	100312470	Mm.480297	NM_001167534	ENSMUSG00000094798	Vmn1r2	Gm11776|OTTMUSG00000004179	vomeronasal 1 receptor 2	protein-coding	0.015000	0.358209	
mm_126965.1	chr15	92597048	92597248	+	1	NA	NA	NA	39	NM_001164594	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding	0.035000	0.502488	
mm_125008.1	chr15	25414086	25414286	+	1	NA	NA	NA	-6	NR_027376	432939	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0.040000	0.577114	
mm_16230.1	chr2	173156002	173156202	+	1	NA	NA	NA	3029	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.020000	0.557214	
mm_23526.1	chr3	60618100	60618300	+	1	NA	NA	NA	117021	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.000000	0.298507	-68(TTTTTTATGCCC,+,0.00)
mm_97337.1	chr11	77339959	77340159	+	1	NA	NA	NA	-8221	NM_001291190	237860	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot homolog 2 (Drosophila)	protein-coding	0.000000	0.338308	
mm_156677.1	chrX	159303226	159303426	+	1	NA	NA	NA	47544	NM_001346675	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	0.030000	0.407960	
mm_149713.1	chr19	21653234	21653434	+	1	NA	NA	NA	25	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.175000	0.835821	
mm_69085.1	chr7	127016743	127016943	-	1	NA	NA	NA	509	NM_030240	67278	Mm.345385	NM_030240	ENSMUSG00000030680	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0.035000	0.606965	
mm_136174.1	chr16	88707863	88708063	-	1	NA	NA	NA	-1	NM_027155	69661	Mm.58243	NM_027155	ENSMUSG00000050704	2310061N02Rik	-	RIKEN cDNA 2310061N02 gene	protein-coding	0.020000	0.472637	
mm_855.1	chr1	52123071	52123271	+	1	NA	NA	NA	3549	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.055000	0.502488	
mm_28319.1	chr3	89322766	89322966	-	1	NA	NA	NA	13	NM_010108	13638	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0.100000	0.736318	
mm_72510.1	chr8	83900368	83900568	+	1	NA	NA	NA	370	NM_181039	330814	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0.175000	0.835821	
mm_101444.1	chr11	30160902	30161102	-	1	NA	NA	NA	37255	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.000000	0.378109	
mm_150072.1	chr19	29386643	29386843	+	1	NA	NA	NA	19305	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.487562	
mm_122515.1	chr14	47177750	47177950	-	1	NA	NA	NA	11552	NM_008102	14528	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	0.020000	0.412935	
mm_42570.1	chr5	117209908	117210108	+	1	NA	NA	NA	76420	NM_183306	330177	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.000000	0.432836	
mm_169180.1	chr13	65817565	65817765	-	1	NA	NA	NA	-295788	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.020000	0.527363	
mm_93241.1	chr10	95415890	95416090	-	1	NA	NA	NA	222	NM_001168655	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.090000	0.711443	
mm_148312.1	chr18	83764862	83765062	-	1	NA	NA	NA	321600	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.000000	0.402985	
mm_17577.1	chr2	30415235	30415435	-	1	NA	NA	NA	413	NM_007760	12908	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.080000	0.651741	
mm_87093.1	chr10	33083077	33083277	+	1	NA	NA	NA	-306	NM_029726	76757	Mm.338508	NM_029726	ENSMUSG00000019787	Trdn	2310045H21Rik|EG432451|TDN	triadin	protein-coding	0.005000	0.402985	
mm_125321.1	chr15	38300293	38300493	+	1	NA	NA	NA	318	NM_013692	21847	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.025000	0.502488	
mm_86874.1	chr10	21996851	21997051	+	1	NA	NA	NA	2285	NM_011361	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.005000	0.442786	
mm_2148.1	chr1	88134696	88134896	+	1	NA	NA	NA	-13	NM_145079	94284	Mm.300095	NM_145079	ENSMUSG00000054545	Ugt1a6a	UDPGT|UDPGT 1-6|UGT1-06|UGT1.6|Ugt1a6|Ugt1a7	UDP glucuronosyltransferase 1 family, polypeptide A6A	protein-coding	0.015000	0.497512	
mm_171613.1	chr4	150247820	150248020	+	1	NA	NA	NA	10596	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.015000	0.557214	
mm_146152.1	chr18	75000378	75000578	+	1	NA	NA	NA	1	NM_001002239	319195	Mm.276337	NM_001002239	ENSMUSG00000062328	Rpl17	-	ribosomal protein L17	protein-coding	0.080000	0.582090	-81(CTTTCTAAAAGC,-,0.00)
mm_18082.1	chr2	44635145	44635345	-	1	NA	NA	NA	226377	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.010000	0.487562	
mm_102425.1	chr11	59430019	59430219	-	1	NA	NA	NA	19837	NM_144521	67826	Mm.26680	NM_144521	ENSMUSG00000009894	Snap47	1110031B06Rik|SNAP-47	synaptosomal-associated protein, 47	protein-coding	0.005000	0.462687	
mm_123159.1	chr14	57133158	57133358	-	1	NA	NA	NA	353	NM_001271663	14623	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	0.090000	0.666667	
mm_157816.1	chrX	74023703	74023903	-	1	NA	NA	NA	115	NM_001177975	16179	Mm.38241	NM_008363	ENSMUSG00000031392	Irak1	AA408924|IRAK|IRAK-1|IRAK1-S|IRAK1b|Il1rak|Plpk|mPLK	interleukin-1 receptor-associated kinase 1	protein-coding	0.150000	0.805970	
mm_134368.1	chr16	17121651	17121851	-	1	NA	NA	NA	2391	NR_029659	723816		NR_029659	ENSMUSG00000065572	Mir130b	Mirn130b|mir-130b	microRNA 130b	ncRNA	0.040000	0.641791	
mm_150369.1	chr19	34651621	34651821	+	1	NA	NA	NA	10832	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.000000	0.407960	
mm_59028.1	chr7	19303987	19304187	+	1	NA	NA	NA	5958	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.030000	0.587065	
mm_141926.1	chr17	35027553	35027753	-	1	NA	NA	NA	363	NR_028258	78376	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	0.005000	0.482587	-7(GCCCTTTAGAGG,-,0.00),-6(CCCTTTAGAGGA,+,0.00)
mm_75856.1	chr8	70699932	70700132	-	1	NA	NA	NA	2293	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.090000	0.681592	
mm_28939.1	chr3	98882189	98882389	-	1	NA	NA	NA	10941	NM_019545	56185	Mm.281874	NM_019545	ENSMUSG00000027870	Hao2	AI325478|Hao-2|Hao3|Haox3	hydroxyacid oxidase 2	protein-coding	0.015000	0.447761	
mm_45177.1	chr5	51553801	51554001	-	1	NA	NA	NA	20	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.000000	0.507463	
mm_75779.1	chr8	69996238	69996438	-	1	NA	NA	NA	46	NM_001286450	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.075000	0.646766	
mm_17713.1	chr2	32385931	32386131	-	1	NA	NA	NA	1708	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.015000	0.542289	
mm_32595.1	chr4	111750525	111750725	+	1	NA	NA	NA	30615	NM_026470	67946	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	0.000000	0.417910	-97(CCTTTTAGGCTG,+,0.00)
mm_103681.1	chr11	79273786	79273986	-	1	NA	NA	NA	-19191	NM_019653	78889	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.015000	0.482587	
mm_28172.1	chr3	88000064	88000264	-	1	NA	NA	NA	192	NM_007529	12032	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0.135000	0.736318	
mm_21366.1	chr2	157134998	157135198	-	1	NA	NA	NA	124	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.080000	0.636816	
mm_90179.1	chr10	119819417	119819617	+	1	NA	NA	NA	128	NM_028736	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding	0.030000	0.522388	75(TCTTTTAAATGC,+,0.00)
mm_134117.1	chr16	10297046	10297246	-	1	NA	NA	NA	16822	NM_007929	13731	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	0.005000	0.412935	
mm_11923.1	chr2	52072770	52072970	+	1	NA	NA	NA	33	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.150000	0.776119	
mm_73048.1	chr8	94355698	94355898	+	1	NA	NA	NA	26590	NM_001205311	20497	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.015000	0.542289	
mm_7898.1	chr1	133610144	133610344	-	1	NA	NA	NA	36	NM_009227	20643	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	0.100000	0.621891	
mm_48493.1	chr5	142629238	142629438	-	1	NA	NA	NA	-246	NM_178398	74781	Mm.29432	NM_178398	ENSMUSG00000029578	Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding	0.100000	0.567164	
mm_72831.1	chr8	88272191	88272391	+	1	NA	NA	NA	-112	NM_007406	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.040000	0.587065	
mm_114667.1	chr13	78202549	78202749	+	1	NA	NA	NA	-3776	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.035000	0.507463	-41(GTTTATATAGAA,+,0.00)
mm_103933.1	chr11	83648574	83648774	-	1	NA	NA	NA	704	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.025000	0.517413	
mm_18722.1	chr2	72886513	72886713	-	1	NA	NA	NA	-72896	NR_102349	76218	Mm.75260	NR_102348	ENSMUSG00000085427	6430710C18Rik	5033406J01Rik	RIKEN cDNA 6430710C18 gene	ncRNA	0.005000	0.422886	
mm_36373.1	chr4	76556939	76557139	-	1	NA	NA	NA	-1278753	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.000000	0.393035	
mm_65931.1	chr7	30322314	30322514	-	1	NA	NA	NA	-39	NM_001033140	68332	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	0.080000	0.671642	
mm_124745.1	chr15	6607713	6607913	+	1	NA	NA	NA	27966	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.015000	0.402985	-30(GCTTAAAAATGC,+,0.00)
mm_165307.1	chr2	98666805	98667005	-	1	NA	NA	NA	1199248	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.040000	0.373134	
mm_36314.1	chr4	69926070	69926270	-	1	NA	NA	NA	484265	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.020000	0.452736	
mm_80934.1	chr9	102690582	102690782	+	1	NA	NA	NA	-27122	NM_019764	56332	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0.050000	0.582090	
mm_10774.1	chr2	24286981	24287181	+	1	NA	NA	NA	-4115	NM_153077	215274	Mm.218750	NM_153077	ENSMUSG00000046845	Il1f10	-	interleukin 1 family, member 10	protein-coding	0.010000	0.487562	
mm_104792.1	chr11	98750417	98750617	-	1	NA	NA	NA	8732	NM_001313983	21833	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.010000	0.567164	
mm_89024.1	chr10	82585298	82585498	+	1	NA	NA	NA	37830	NM_001135569	544717	Mm.334867	NM_001135567	ENSMUSG00000063320	1190007I07Rik	-	RIKEN cDNA 1190007I07 gene	protein-coding	0.030000	0.398010	
mm_130423.1	chr15	98093211	98093411	-	1	NA	NA	NA	258	NM_144851	223870	Mm.384023	NM_144851	ENSMUSG00000033075	Senp1	2310046A20Rik|D15Ertd528e|E330036L07Rik|suPr-2	SUMO1/sentrin specific peptidase 1	protein-coding	0.100000	0.681592	
mm_170838.1	chr2	177249229	177249429	-	1	NA	NA	NA	-215413	NM_001177568	628308	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420|OTTMUSG00000016588	zinc finger protein 970	protein-coding	0.010000	0.477612	
mm_47984.1	chr5	135911477	135911677	-	1	NA	NA	NA	23064	NM_018871	22628	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.085000	0.611940	
mm_165892.1	chr4	44362170	44362370	+	1	NA	NA	NA	61353	NM_010790	17279	Mm.268668	NM_010790	ENSMUSG00000035683	Melk	AI327312|MPK38|mKIAA0175	maternal embryonic leucine zipper kinase	protein-coding	0.020000	0.487562	
mm_137455.1	chr17	26561368	26561568	+	1	NA	NA	NA	-44	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.135000	0.766169	-69(CCCCTTTAATGG,-,0.00),-67(CCTTTAATGGGG,+,0.00)
mm_84488.1	chr9	66845764	66845964	-	1	NA	NA	NA	-11158	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.015000	0.378109	
mm_41848.1	chr5	104437551	104437751	+	1	NA	NA	NA	1459	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.010000	0.383085	
mm_48216.1	chr5	137611243	137611443	-	1	NA	NA	NA	61	NM_008788	18542	Mm.262345	NM_008788	ENSMUSG00000029718	Pcolce	Astt-2|Astt2|P14|PCPE-1	procollagen C-endopeptidase enhancer protein	protein-coding	0.015000	0.611940	
mm_51507.1	chr6	83135798	83135998	+	1	NA	NA	NA	90	NM_001136227	20166	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0.080000	0.681592	
mm_166463.1	chr5	140830169	140830369	-	1	NA	NA	NA	162	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.195000	0.825871	
mm_40086.1	chr5	34531874	34532074	+	1	NA	NA	NA	6190	NM_011893	24055	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.010000	0.557214	
mm_66630.1	chr7	45510283	45510483	-	1	NA	NA	NA	25	NM_008749	18220	Mm.258923	NM_008749	ENSMUSG00000030824	Nucb1	B230337F23Rik|C77483|Calnuc|MTEST82|Nucb	nucleobindin 1	protein-coding	0.060000	0.611940	30(GGCCTTAAAAAA,-,0.00),32(CCTTAAAAAACG,+,0.00)
mm_16741.1	chr2	9520034	9520234	-	1	NA	NA	NA	330619	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.000000	0.373134	
mm_38118.1	chr4	134547980	134548180	-	1	NA	NA	NA	4086	NM_029100	74777	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	0.020000	0.567164	
mm_113731.1	chr13	43974825	43975025	+	1	NA	NA	NA	-146242	NR_045285	328235	Mm.188356	NR_045285	ENSMUSG00000089815	Gm5083	A730030A06	predicted gene 5083	ncRNA	0.000000	0.348259	
mm_62939.1	chr7	118936980	118937180	+	1	NA	NA	NA	58131	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.005000	0.517413	
mm_67147.1	chr7	73476005	73476205	-	1	NA	NA	NA	65641	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.000000	0.313433	
mm_20507.1	chr2	130582472	130582672	-	1	NA	NA	NA	16	NM_009732	11998	Mm.6190	NM_009732	ENSMUSG00000037727	Avp	Vp|Vsp	arginine vasopressin	protein-coding	0.035000	0.626866	
mm_172161.1	chr6	44792878	44793078	+	1	NA	NA	NA	-267083	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.045000	0.447761	
mm_1321.1	chr1	65100438	65100638	+	1	NA	NA	NA	2825	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.050000	0.587065	
mm_97748.1	chr11	80476950	80477150	+	1	NA	NA	NA	4	NM_009871	12569	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0.170000	0.830846	
mm_90879.1	chr10	9675709	9675909	-	1	NA	NA	NA	-601	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0.055000	0.606965	
mm_124731.1	chr15	6580530	6580730	+	1	NA	NA	NA	783	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.015000	0.537313	
mm_36649.1	chr4	94569195	94569395	-	1	NA	NA	NA	-12499	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.005000	0.353234	33(ATGTTTAAAAAG,-,0.00)
mm_28068.1	chr3	84270627	84270827	-	1	NA	NA	NA	56	NM_001271725	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.010000	0.537313	
mm_125538.1	chr15	58140848	58141048	+	1	NA	NA	NA	-418	NM_001326602	76773	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	0.030000	0.507463	
mm_147250.1	chr18	38598875	38599075	-	1	NA	NA	NA	2293	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.010000	0.442786	
mm_95398.1	chr11	49712842	49713042	+	1	NA	NA	NA	-220	NM_212484	104625	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0.090000	0.606965	
mm_118727.1	chr14	22224936	22225136	+	1	NA	NA	NA	205324	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.000000	0.537313	-31(CACCAGAAAAGG,-,0.00)
mm_19811.1	chr2	110362809	110363009	-	1	NA	NA	NA	84	NM_026271	67606	Mm.291809	NM_026271	ENSMUSG00000074971	Fibin	1110018M03Rik	fin bud initiation factor homolog (zebrafish)	protein-coding	0.060000	0.611940	
mm_108714.1	chr12	87147689	87147889	+	1	NA	NA	NA	82	NM_010363	14874	Mm.29652	NM_010363	ENSMUSG00000021033	Gstz1	MAAI	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	protein-coding	0.070000	0.666667	
mm_120223.1	chr14	62838552	62838752	+	1	NA	NA	NA	931	NR_106174	102465889		NR_106174	ENSMUSG00000099245	Mir8098	Gm27462|mmu-mir-8098	microRNA 8098	ncRNA	0.010000	0.412935	
mm_19096.1	chr2	79428874	79429074	-	1	NA	NA	NA	14	NM_001048176	228094	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0.050000	0.636816	
mm_17625.1	chr2	31031673	31031873	-	1	NA	NA	NA	49494	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.010000	0.437811	
mm_160209.1	chr7	92663522	92663722	-	1	NA	NA	NA	6290	NM_029078	74737	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	0.000000	0.383085	-62(GCTTAAAAAGTA,+,0.00)
mm_119456.1	chr14	47062772	47062972	+	1	NA	NA	NA	-6105	NM_001310544	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.000000	0.452736	-6(TTTTTTAAGGAG,+,0.00)
mm_145559.1	chr18	60812173	60812373	+	1	NA	NA	NA	197	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.030000	0.592040	
mm_72974.1	chr8	92887353	92887553	+	1	NA	NA	NA	-13942	NM_027112	69543	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	0.005000	0.293532	
mm_110780.1	chr12	71009158	71009358	-	1	NA	NA	NA	6565	NR_045056	73204	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0.005000	0.338308	
mm_147571.1	chr18	55336257	55336457	-	1	NA	NA	NA	-346177	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.000000	0.358209	
mm_126772.1	chr15	86067735	86067935	+	1	NA	NA	NA	9108	NM_001205353	223752	Mm.24442	NM_172611	ENSMUSG00000035900	Gramd4	9930016O13	GRAM domain containing 4	protein-coding	0.010000	0.611940	
mm_116141.1	chr13	29654226	29654426	-	1	NA	NA	NA	201347	NR_131896	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0.005000	0.472637	
mm_25530.1	chr3	114904267	114904467	+	1	NA	NA	NA	-268	NM_001286750	229759	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding	0.050000	0.601990	
mm_41782.1	chr5	103719916	103720116	+	1	NA	NA	NA	-34146	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.010000	0.492537	
mm_108779.1	chr12	89813497	89813697	+	1	NA	NA	NA	1114	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.025000	0.507463	
mm_30143.1	chr3	142395540	142395740	-	1	NA	NA	NA	56	NM_001190853	56376	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0.120000	0.741294	
mm_73066.1	chr8	94393446	94393646	+	1	NA	NA	NA	7046	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.015000	0.432836	
mm_83227.1	chr9	42338862	42339062	-	1	NA	NA	NA	60967	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.030000	0.512438	
mm_10282.1	chr2	10080485	10080685	+	1	NA	NA	NA	-27	NM_025280	16588	Mm.35498	NM_025280	ENSMUSG00000037262	Kin	Kin17	Kin17 DNA and RNA binding protein	protein-coding	0.090000	0.597015	
mm_71242.1	chr8	40910737	40910937	+	1	NA	NA	NA	-15396	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.005000	0.378109	
mm_60545.1	chr7	44480536	44480736	+	1	NA	NA	NA	-3881	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.462687	
mm_93596.1	chr10	117148396	117148596	-	1	NA	NA	NA	-22	NM_177798	327826	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0.085000	0.721393	
mm_165468.1	chr2	164237359	164237559	+	1	NA	NA	NA	882	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.015000	0.447761	
mm_47581.1	chr5	124578934	124579134	-	1	NA	NA	NA	97	NM_145371	209354	Mm.28839	NM_145371	ENSMUSG00000029388	Eif2b1	D5Ertd406e|EIF2BA	eukaryotic translation initiation factor 2B, subunit 1 (alpha)	protein-coding	0.145000	0.701493	
mm_3341.1	chr1	137969121	137969321	+	1	NA	NA	NA	2582	NR_029820	723890		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA	0.010000	0.407960	
mm_113736.1	chr13	44439627	44439827	+	1	NA	NA	NA	0	NR_045489	69491	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.005000	0.427861	
mm_66315.1	chr7	40534941	40535141	-	1	NA	NA	NA	-139696	NR_045504	71029	Mm.399496	NR_045504	ENSMUSG00000102004	4933402C06Rik	-	RIKEN cDNA 4933402C06 gene	ncRNA	0.005000	0.383085	
mm_150309.1	chr19	34570912	34571112	+	1	NA	NA	NA	-12517	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.000000	0.492537	
mm_100108.1	chr11	115780608	115780808	+	1	NA	NA	NA	-15116	NR_049194	100885833		NR_049194	ENSMUSG00000093539	Mir5621	Gm22564|mir-5621|mmu-mir-5621	microRNA 5621	ncRNA	0.025000	0.606965	
mm_61587.1	chr7	80024734	80024934	+	1	NA	NA	NA	20	NM_001146000	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.035000	0.631841	
mm_11877.1	chr2	49465830	49466030	+	1	NA	NA	NA	14444	NM_172663	227867	Mm.29167	NM_172663	ENSMUSG00000069495	Epc2	5830499L14|D2Ertd694e	enhancer of polycomb homolog 2 (Drosophila)	protein-coding	0.010000	0.388060	
mm_50260.1	chr6	43265598	43265798	+	1	NA	NA	NA	54	NM_133674	54324	Mm.320978	NM_133674	ENSMUSG00000033542	Arhgef5	2210412D05Rik|AA717842|AW495314|Tim1	Rho guanine nucleotide exchange factor (GEF) 5	protein-coding	0.105000	0.771144	
mm_165483.1	chr2	164333422	164333622	+	1	NA	NA	NA	757	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.040000	0.482587	39(CCTTTAAAACCA,+,0.00)
mm_15103.1	chr2	153347297	153347497	+	1	NA	NA	NA	1258	NM_001039939	228790	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0.015000	0.393035	81(GTTTTAATGGTG,+,0.00)
mm_5084.1	chr1	4496281	4496481	-	1	NA	NA	NA	973	NM_001289464	20671	Mm.279103	NM_011441	ENSMUSG00000025902	Sox17	-	SRY (sex determining region Y)-box 17	protein-coding	0.025000	0.482587	
mm_122063.1	chr14	30434007	30434207	-	1	NA	NA	NA	-23929	NR_131095	77710	Mm.410773	NR_131095		4831407H17Rik	-	RIKEN cDNA 4831407H17 gene	ncRNA	0.010000	0.497512	
mm_52462.1	chr6	113697153	113697353	+	1	NA	NA	NA	203	NM_001033463	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.155000	0.820896	
mm_31476.1	chr4	51216566	51216766	+	1	NA	NA	NA	-12	NM_001162865	74914	Mm.159368	NM_001162865	ENSMUSG00000039555	Cylc2	4930488P18Rik	cylicin, basic protein of sperm head cytoskeleton 2	protein-coding	0.005000	0.358209	
mm_157486.1	chrX	48208776	48208976	-	1	NA	NA	NA	-174	NM_172465	208884	Mm.207367	NM_172465	ENSMUSG00000036985	Zdhhc9	6430508G22|9530098M12Rik	zinc finger, DHHC domain containing 9	protein-coding	0.050000	0.592040	
mm_58304.1	chr6	146115991	146116191	-	1	NA	NA	NA	181944	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.005000	0.283582	
mm_61055.1	chr7	49910211	49910411	+	1	NA	NA	NA	12	NM_001146013	104245	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	0.035000	0.457711	
mm_108292.1	chr12	79151915	79152115	+	1	NA	NA	NA	20443	NM_016800	53612	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	0.000000	0.422886	70(CACTATATAAAC,-,0.00)
mm_22708.1	chr3	19187261	19187461	+	1	NA	NA	NA	32	NM_001253391	67472	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.020000	0.512438	
mm_50179.1	chr6	41590059	41590259	+	1	NA	NA	NA	-15323	NM_001146351	13848	Mm.271976	NM_007680	ENSMUSG00000029869	Ephb6	Cekl|Mep	Eph receptor B6	protein-coding	0.005000	0.338308	
mm_86300.1	chr9	122310829	122311029	-	1	NA	NA	NA	-16506	NM_133979	102566	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	0.050000	0.626866	
mm_7287.1	chr1	97761539	97761739	-	1	NA	NA	NA	8453	NM_173760	227399	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	0.005000	0.398010	64(GACTATTTAAAC,-,0.00)
mm_133130.1	chr16	65828521	65828721	+	1	NA	NA	NA	12988	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.025000	0.472637	
mm_111080.1	chr12	80181875	80182075	-	1	NA	NA	NA	-49131	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.010000	0.497512	
mm_155122.1	chrX	48871904	48872104	+	1	NA	NA	NA	5709	NM_001085499	209005	Mm.336054	NM_001085499	ENSMUSG00000079606	Gm595	-	predicted gene 595	protein-coding	0.010000	0.517413	
mm_150651.1	chr19	41911924	41912124	+	1	NA	NA	NA	153	NM_023418	18648	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	0.100000	0.671642	
mm_153997.1	chr19	50678623	50678823	-	1	NA	NA	NA	-77	NM_001290356	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.165000	0.796020	
mm_6812.1	chr1	84157340	84157540	-	1	NA	NA	NA	61521	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.422886	
mm_116754.1	chr13	52530390	52530590	-	1	NA	NA	NA	346	NM_001024474	68203	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0.105000	0.721393	
mm_18804.1	chr2	73910879	73911079	-	1	NA	NA	NA	347	NM_175015	228033	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	0.105000	0.676617	
mm_34528.1	chr4	149323873	149324073	+	1	NA	NA	NA	-10666	NR_131918	74310	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0.045000	0.547264	
mm_55262.1	chr6	53710631	53710831	-	1	NA	NA	NA	110094	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.015000	0.512438	
mm_127489.1	chr15	101316004	101316204	+	1	NA	NA	NA	22892	NR_033803	77717	Mm.391998	NR_033803	ENSMUSG00000075408	6030408B16Rik	AI225877	RIKEN cDNA 6030408B16 gene	ncRNA	0.020000	0.532338	
mm_32116.1	chr4	99030826	99031026	+	1	NA	NA	NA	-28	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.010000	0.407960	-5(GTGTATATAAAG,-,0.00)
mm_140978.1	chr17	24707509	24707709	-	1	NA	NA	NA	44	NM_145396	213773	Mm.100353	NM_145396	ENSMUSG00000040688	Tbl3	9430070M15Rik	transducin (beta)-like 3	protein-coding	0.090000	0.626866	
mm_149472.1	chr19	11694893	11695093	+	1	NA	NA	NA	-2062	NM_001033283	225923	Mm.297596	NM_001033283	ENSMUSG00000055933	Oosp3	Gm97	oocyte secreted protein 3	protein-coding	0.025000	0.447761	
mm_28525.1	chr3	92605843	92606043	-	1	NA	NA	NA	15717	NM_001166172	78382	Mm.235474	NM_001166172	ENSMUSG00000086848	Lce6a	2210420J11Rik	late cornified envelope 6A	protein-coding	0.005000	0.427861	-34(ATGTATAAAAGA,-,0.00),57(GGCTATTTGAGG,-,0.00)
mm_108879.1	chr12	99964419	99964619	+	1	NA	NA	NA	20	NM_001164427	217826	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.045000	0.616915	
mm_11899.1	chr2	50066390	50066590	+	1	NA	NA	NA	61	NM_177139	320343	Mm.130607	NM_177139	ENSMUSG00000050447	Lypd6	E130115E03Rik	LY6/PLAUR domain containing 6	protein-coding	0.150000	0.776119	
mm_47789.1	chr5	132212808	132213008	-	1	NA	NA	NA	329435	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.000000	0.437811	
mm_83606.1	chr9	48604979	48605179	-	1	NA	NA	NA	44	NM_001311062	18113	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0.010000	0.507463	
mm_59685.1	chr7	28440882	28441082	+	1	NA	NA	NA	45	NM_001039192	63986	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.005000	0.562189	
mm_87063.1	chr10	28873923	28874123	+	1	NA	NA	NA	49484	NR_033601	114676	Mm.390292	NR_033601		4930519F09Rik	-	pyruvate dehydrogenase E1 alpha 1 pseudogene	pseudo	0.000000	0.338308	
mm_4488.1	chr1	173630975	173631175	+	1	NA	NA	NA	216	NM_175026	236312	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	0.000000	0.472637	
mm_170136.1	chr17	39847737	39847937	+	1	NA	NA	NA	4840	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.095000	0.611940	
mm_27332.1	chr3	50396148	50396348	-	1	NA	NA	NA	47365	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.398010	-32(TCTTATATAGCA,+,0.00)
mm_84855.1	chr9	78488032	78488232	-	1	NA	NA	NA	-6408	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.005000	0.527363	
mm_60276.1	chr7	43944967	43945167	+	1	NA	NA	NA	55	NR_033120	16604	Mm.195787	NR_033120	ENSMUSG00000060161	Klk1b7-ps	1700127D06Rik|Klk-ps2|mGK-7	kallikrein 1-related peptidase b7, pseudogene	pseudo	0.010000	0.577114	
mm_107132.1	chr12	21224205	21224405	+	1	NA	NA	NA	61932	NM_008403	16413	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	0.015000	0.447761	-12(GTTTTTAAACAG,+,0.00)
mm_72834.1	chr8	88275295	88275495	+	1	NA	NA	NA	2992	NM_007406	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.000000	0.407960	
mm_79802.1	chr9	64173276	64173476	+	1	NA	NA	NA	-11	NM_024212	67891	Mm.280083	NM_024212	ENSMUSG00000032399	Rpl4	2010004J23Rik	ribosomal protein L4	protein-coding	0.030000	0.517413	
mm_68690.1	chr7	119479077	119479277	-	1	NA	NA	NA	85	NM_009470	22242	Mm.10826	NM_009470	ENSMUSG00000030963	Umod	THP|Urehd1|urehr4	uromodulin	protein-coding	0.000000	0.472637	
mm_91025.1	chr10	17919995	17920195	-	1	NA	NA	NA	27972	NM_001033432	380629	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.015000	0.452736	
mm_71378.1	chr8	45885276	45885476	+	1	NA	NA	NA	-109	NM_016798	53318	Mm.282900	NM_016798	ENSMUSG00000031636	Pdlim3	AI463105|ALP|Actn2lp	PDZ and LIM domain 3	protein-coding	0.045000	0.611940	
mm_60033.1	chr7	30981811	30982011	+	1	NA	NA	NA	-10	NM_001242647	76415	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.010000	0.577114	
mm_93868.1	chr10	123147251	123147451	-	1	NA	NA	NA	49668	NM_027604	14479	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	0.015000	0.497512	-64(AGCTATAAATAG,-,0.00)
mm_77973.1	chr9	7837102	7837302	+	1	NA	NA	NA	-145	NM_007465	11797	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.125000	0.676617	
mm_69683.1	chr7	139988908	139989108	-	1	NA	NA	NA	-2134	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.005000	0.537313	-48(GGCCATAAAGAC,-,0.00)
mm_81229.1	chr9	107675687	107675887	+	1	NA	NA	NA	3805	NM_008140	14685	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.025000	0.552239	
mm_31274.1	chr4	45640684	45640884	+	1	NA	NA	NA	-42805	NM_001033412	329839	Mm.331582	NM_001033412		Gm829	-	predicted gene 829	protein-coding	0.025000	0.482587	
mm_164091.1	chr15	9567205	9567405	+	1	NA	NA	NA	-37429	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.000000	0.328358	
mm_41379.1	chr5	90723377	90723577	+	1	NA	NA	NA	-35821	NM_009141	20311	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0.005000	0.373134	
mm_122938.1	chr14	54965190	54965390	-	1	NA	NA	NA	1317	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.050000	0.587065	
mm_135453.1	chr16	45724407	45724607	-	1	NA	NA	NA	24	NM_019754	56370	Mm.24183	NM_019754	ENSMUSG00000022658	Tagln3	2700038H05Rik|2900005O10Rik|AI426007|Np25	transgelin 3	protein-coding	0.050000	0.587065	
mm_108303.1	chr12	79327015	79327215	+	1	NA	NA	NA	29764	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.005000	0.393035	
mm_40432.1	chr5	53589337	53589537	+	1	NA	NA	NA	-909	NM_009035	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.115000	0.691542	
mm_104140.1	chr11	86993643	86993843	-	1	NA	NA	NA	19	NM_001005341	77864	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee-like 2 (Drosophila)	protein-coding	0.110000	0.691542	48(GGCTTTAAGAGC,-,0.00),49(GCTTTAAGAGCG,+,0.00)
mm_139823.1	chr17	67728459	67728659	+	1	NA	NA	NA	31294	NM_008480	16772	Mm.303386	NM_008480	ENSMUSG00000032796	Lama1	AA408497|Lama	laminin, alpha 1	protein-coding	0.015000	0.338308	-6(TTTTTTAAAGGA,+,0.00)
mm_27520.1	chr3	57294816	57295016	-	1	NA	NA	NA	7003	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	0.025000	0.517413	
mm_87043.1	chr10	28784872	28785072	+	1	NA	NA	NA	116612	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.005000	0.407960	
mm_3164.1	chr1	135324695	135324895	+	1	NA	NA	NA	-18	NM_053106	93689	Mm.180124	NM_053106	ENSMUSG00000048096	Lmod1	9530015K06Rik|SM-Lmod	leiomodin 1 (smooth muscle)	protein-coding	0.015000	0.606965	
mm_15105.1	chr2	153356942	153357142	+	1	NA	NA	NA	10903	NM_001039939	228790	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0.010000	0.412935	
mm_47101.1	chr5	118244916	118245116	-	1	NA	NA	NA	9	NM_001109902	269695	Mm.320042	NM_172998	ENSMUSG00000032850	Rnft2	AW049082|B830028P19Rik|Tmem118	ring finger protein, transmembrane 2	protein-coding	0.085000	0.666667	
mm_127234.1	chr15	99406500	99406700	+	1	NA	NA	NA	13381	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.015000	0.462687	
mm_151339.1	chr19	55895111	55895311	+	1	NA	NA	NA	-110	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.030000	0.412935	-25(AGCTATTAAAGC,-,0.00),58(GCTTTTATGCTT,+,0.00)
mm_45014.1	chr5	38527189	38527389	-	1	NA	NA	NA	-25137	NM_145559	117591	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.010000	0.422886	
mm_54173.1	chr6	23650204	23650404	-	1	NA	NA	NA	1	NM_198251	386611	Mm.436547	NM_198251	ENSMUSG00000051956	Rnf133	Greul2	ring finger protein 133	protein-coding	0.000000	0.388060	
mm_124973.1	chr15	20418089	20418289	+	1	NA	NA	NA	248561	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.005000	0.368159	
mm_126957.1	chr15	92161472	92161672	+	1	NA	NA	NA	215	NM_001159647	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.020000	0.492537	
mm_55070.1	chr6	49051913	49052113	-	1	NA	NA	NA	15495	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.010000	0.487562	
mm_26366.1	chr3	142560104	142560304	+	1	NA	NA	NA	152	NM_001289492	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.005000	0.467662	
mm_170195.1	chr17	66449681	66449881	-	1	NA	NA	NA	-31	NM_001114098	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.130000	0.776119	
mm_51350.1	chr6	72555999	72556199	+	1	NA	NA	NA	6452	NM_001271395	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.035000	0.577114	
mm_19347.1	chr2	90917588	90917788	-	1	NA	NA	NA	362	NM_025576	66461	Mm.23926	NM_025576		Ptpmt1	1110001D10Rik|2810004N20Rik|PLIP	protein tyrosine phosphatase, mitochondrial 1	protein-coding	0.135000	0.741294	
mm_25897.1	chr3	131110744	131110944	+	1	NA	NA	NA	547	NM_001276402	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.050000	0.517413	
mm_62512.1	chr7	102210426	102210626	+	1	NA	NA	NA	191	NM_001291358	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.060000	0.601990	
mm_62952.1	chr7	119606725	119606925	+	1	NA	NA	NA	-11003	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.015000	0.452736	
mm_61334.1	chr7	68275898	68276098	+	1	NA	NA	NA	596	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.055000	0.646766	
mm_25489.1	chr3	109340369	109340569	+	1	NA	NA	NA	-214	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.060000	0.597015	
mm_76825.1	chr8	104624125	104624325	-	1	NA	NA	NA	171	NM_007663	12556	Mm.19423	NM_007663	ENSMUSG00000031881	Cdh16	-	cadherin 16	protein-coding	0.020000	0.587065	
mm_112910.1	chr13	20910566	20910766	+	1	NA	NA	NA	116553	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.338308	
mm_164133.1	chr15	45583409	45583609	+	1	NA	NA	NA	-468575	NM_026200	67498	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding	0.010000	0.328358	
mm_169367.1	chr14	32267646	32267846	-	1	NA	NA	NA	-54273	NM_001081130	239017	Mm.318302	NM_001081130	ENSMUSG00000021913	Ogdhl	-	oxoglutarate dehydrogenase-like	protein-coding	0.040000	0.437811	
mm_150118.1	chr19	29945647	29945847	+	1	NA	NA	NA	-43	NM_001164724	77125	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	0.020000	0.452736	
mm_90638.1	chr10	128499147	128499347	+	1	NA	NA	NA	0	NR_131150	654440	Mm.441262	NR_131150	ENSMUSG00000097353	A430046D13Rik	-	Riken cDNA A430046D13 gene	ncRNA	0.045000	0.587065	
mm_26678.1	chr3	155093466	155093666	+	1	NA	NA	NA	132	NM_028938	74435	Mm.195711	NM_028938	ENSMUSG00000028182	Lrriq3	4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44	leucine-rich repeats and IQ motif containing 3	protein-coding	0.075000	0.626866	-94(GACTTGAAAAGC,-,0.00)
mm_45709.1	chr5	84067007	84067207	-	1	NA	NA	NA	350275	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.000000	0.333333	
mm_126193.1	chr15	78687093	78687293	+	1	NA	NA	NA	30920	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0.020000	0.582090	
mm_171714.1	chr4	81148832	81149032	-	1	NA	NA	NA	238246	NM_026821	52829	Mm.273986	NM_026821	ENSMUSG00000048706	Lurap1l	1110029A09Rik|AV077978|AV175137|D4Bwg0951e|WI-13707|bM350F23.1	leucine rich adaptor protein 1-like	protein-coding	0.015000	0.457711	
mm_110381.1	chr12	40217085	40217285	-	1	NA	NA	NA	5626	NR_035459	100316693		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0.000000	0.378109	
mm_57751.1	chr6	129160111	129160311	-	1	NA	NA	NA	-20404	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.015000	0.402985	-32(GTTTTTAAAGCT,+,0.00)
mm_161599.1	chr16	36808577	36808777	-	1	NA	NA	NA	28	NM_001113405	106389	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0.005000	0.363184	
mm_173235.1	chrX	80535182	80535382	-	1	NA	NA	NA	-535362	NM_138751	192216	Mm.490421	NM_138751	ENSMUSG00000025666	Tmem47	3010015F07Rik|AI115536|BCMP1|Tm4sf10	transmembrane protein 47	protein-coding	0.025000	0.462687	
mm_26497.1	chr3	145651999	145652199	+	1	NA	NA	NA	-2114	NM_010516	16007	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0.030000	0.472637	
mm_114568.1	chr13	74639772	74639972	+	1	NA	NA	NA	0	NM_030711	80898	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0.055000	0.646766	
mm_159328.1	chr3	32561402	32561602	+	1	NA	NA	NA	32020	NM_024200	67414	Mm.290414	NM_024200	ENSMUSG00000027668	Mfn1	2310002F04Rik|6330416C07Rik|D3Ertd265e|HR2|mKIAA4032	mitofusin 1	protein-coding	0.015000	0.452736	
mm_127189.1	chr15	99030192	99030392	+	1	NA	NA	NA	401	NM_009448	22146	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.080000	0.606965	-4(GGGTATATAAGC,-,0.00)
mm_89028.1	chr10	82699065	82699265	+	1	NA	NA	NA	158	NM_001081218	67933	Mm.127405	NM_026462	ENSMUSG00000020246	Hcfc2	1700129L13Rik|AU019838	host cell factor C2	protein-coding	0.120000	0.726368	
mm_151612.1	chr19	3898751	3898951	-	1	NA	NA	NA	6379	NM_016921	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.015000	0.542289	
mm_154938.1	chrX	36111978	36112178	+	1	NA	NA	NA	-30	NM_133990	16164	Mm.24208	NM_133990	ENSMUSG00000017057	Il13ra1	AI882074|CD213a1|IL-13R-alpha-1|IL-13r[a]|Il13ra|NR4	interleukin 13 receptor, alpha 1	protein-coding	0.130000	0.766169	
mm_43269.1	chr5	130384477	130384677	+	1	NA	NA	NA	54	NM_198665	381673	Mm.192133	NM_198665	ENSMUSG00000052014	A330070K13Rik	Gm1051	RIKEN cDNA A330070K13 gene	protein-coding	0.020000	0.562189	
mm_106462.1	chr11	120047001	120047201	-	1	NA	NA	NA	44	NM_001198785	11302	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0.160000	0.791045	
mm_78934.1	chr9	45103807	45104007	+	1	NA	NA	NA	-13969	NM_001014761	72821	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	0.005000	0.447761	
mm_115285.1	chr13	111867853	111868053	+	1	NA	NA	NA	17	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.035000	0.532338	
mm_29519.1	chr3	116507953	116508153	-	1	NA	NA	NA	122	NM_025517	66368	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	0.110000	0.686567	
mm_5334.1	chr1	23922225	23922425	-	1	NA	NA	NA	56	NM_028534	98366	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	0.185000	0.830846	
mm_147954.1	chr18	67045838	67046038	-	1	NA	NA	NA	-42360	NM_177137	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.015000	0.328358	
mm_45384.1	chr5	66135985	66136185	-	1	NA	NA	NA	14893	NM_001291226	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.015000	0.472637	-68(GTCTTTAAAAGG,-,0.00),-67(TCTTTAAAAGGG,+,0.00)
mm_94993.1	chr11	31871479	31871679	+	1	NA	NA	NA	639	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.020000	0.542289	
mm_75495.1	chr8	50916088	50916288	-	1	NA	NA	NA	548076	NR_046067	100039954	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.085000	0.562189	
mm_163495.1	chr12	110088708	110088908	+	1	NA	NA	NA	69265	NR_045466	67280	Mm.390495	NR_045466		3110009F21Rik	-	RIKEN cDNA 3110009F21 gene	ncRNA	0.015000	0.532338	
mm_10495.1	chr2	14914147	14914347	+	1	NA	NA	NA	40591	NM_001309519	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.000000	0.373134	-37(ACCTATAAAAAC,-,0.00)
mm_5141.1	chr1	9745485	9745685	-	1	NA	NA	NA	-2063	NR_040462	73331	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	0.005000	0.467662	-28(GATCTTAAAAGG,-,0.00)
mm_129466.1	chr15	78599105	78599305	-	1	NA	NA	NA	2158	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.015000	0.606965	
mm_108538.1	chr12	84243320	84243520	+	1	NA	NA	NA	-24539	NM_001163501	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.010000	0.502488	
mm_138562.1	chr17	35342215	35342415	+	1	NA	NA	NA	-18	NM_010392	15013	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|ENSMUSG00000079507|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	0.050000	0.616915	
mm_55547.1	chr6	71144272	71144472	-	1	NA	NA	NA	8	NM_001033929	232078	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	0.055000	0.626866	
mm_72764.1	chr8	85555377	85555577	+	1	NA	NA	NA	-206	NM_019794	56445	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0.135000	0.736318	
mm_35948.1	chr4	53113379	53113579	-	1	NA	NA	NA	46416	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.020000	0.487562	
mm_135058.1	chr16	33966938	33967138	-	1	NA	NA	NA	-35	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.075000	0.651741	
mm_167027.1	chr7	68133737	68133937	+	1	NA	NA	NA	130396	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.020000	0.502488	
mm_154009.1	chr19	53057990	53058190	-	1	NA	NA	NA	-18162	NR_045320	78457	Mm.76932	NR_045320	ENSMUSG00000099988	1700054A03Rik	-	RIKEN cDNA 1700054A03 gene	ncRNA	0.005000	0.497512	
mm_45159.1	chr5	49524750	49524950	-	1	NA	NA	NA	-239191	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.115000	0.756219	
mm_76418.1	chr8	84969409	84969609	-	1	NA	NA	NA	-113	NM_001317385	21672	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0.105000	0.696517	
mm_13114.1	chr2	91586069	91586269	+	1	NA	NA	NA	-9912	NR_028553	100217458		NR_028553	ENSMUSG00000077221	Snord67	MBII-166	small nucleolar RNA, C/D box 67	snoRNA	0.005000	0.363184	
mm_92565.1	chr10	79874451	79874651	-	1	NA	NA	NA	83	NM_181681	216152	Mm.29678	NM_181681	ENSMUSG00000035835	Plppr3	Lppr3|Prg2	phospholipid phosphatase related 3	protein-coding	0.115000	0.721393	
mm_100606.1	chr11	121261098	121261298	+	1	NA	NA	NA	1211	NM_001080932	68837	Mm.209750	NM_001080932	ENSMUSG00000039275	Foxk2	1110054H05Rik|5730434B08Rik|6230415M23Rik|ILF|Ilf1	forkhead box K2	protein-coding	0.010000	0.368159	
mm_133166.1	chr16	70504243	70504443	+	1	NA	NA	NA	-112082	NR_040474	52645	Mm.188475	NR_040474		D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0.000000	0.358209	40(CCATATATAGAC,+,0.00)
mm_111353.1	chr12	86982998	86983198	-	1	NA	NA	NA	5578	NM_001080943	238331	Mm.185890	NM_001080943	ENSMUSG00000048483	Zdhhc22	Gm262	zinc finger, DHHC-type containing 22	protein-coding	0.005000	0.432836	
mm_14312.1	chr2	129198702	129198902	+	1	NA	NA	NA	29	NM_001159593	20515	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.125000	0.676617	-33(GGCTATAAATAG,-,0.00)
mm_55427.1	chr6	65144891	65145091	-	1	NA	NA	NA	-261	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.025000	0.452736	
mm_155961.1	chrX	106015629	106015829	+	1	NA	NA	NA	29	NM_025379	66142	Mm.197728	NM_025379	ENSMUSG00000031231	Cox7b	1100001F07Rik|1110004F07Rik|C80563	cytochrome c oxidase subunit VIIb	protein-coding	0.040000	0.492537	
mm_97542.1	chr11	78922162	78922362	+	1	NA	NA	NA	1475	NM_010927	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.482587	
mm_44031.1	chr5	147430751	147430951	+	1	NA	NA	NA	271	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.135000	0.751244	
mm_170682.1	chr2	126844329	126844529	-	1	NA	NA	NA	31832	NM_001164325	58800	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	0.005000	0.432836	
mm_120038.1	chr14	56364910	56365110	+	1	NA	NA	NA	-58	NM_138652	192113	Mm.273271	NM_138652	ENSMUSG00000022229	Atp12a	Atp1al1|HKalpha2|cHKA	ATPase, H+/K+ transporting, nongastric, alpha polypeptide	protein-coding	0.105000	0.691542	-32(CGGCATTTAAGG,-,0.00),-30(GCATTTAAGGCG,+,0.00)
mm_26717.1	chr3	158038249	158038449	+	1	NA	NA	NA	1667	NM_001289524	67144	Mm.358704	NM_024194	ENSMUSG00000063052	Lrrc40	2610040E16Rik|AI837674	leucine rich repeat containing 40	protein-coding	0.005000	0.388060	
mm_124216.1	chr14	100208714	100208914	-	1	NA	NA	NA	-59018	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.010000	0.402985	-27(TTCTTTAAAAGA,-,0.00),-26(TCTTTAAAAGAT,+,0.00),3(TCCTTTATACCC,+,0.00),13(CCTTTTATGTAC,+,0.00)
mm_11316.1	chr2	30364183	30364383	+	1	NA	NA	NA	50	NM_001242407	108958	Mm.254974	NM_175392	ENSMUSG00000026858	Miga2	5730472N09Rik|AA408683|AI790341|C9orf54|Fam73b|R74766	mitoguardin 2	protein-coding	0.080000	0.656716	
mm_107715.1	chr12	56253055	56253255	+	1	NA	NA	NA	-88	NR_045048	100503961	Mm.136732	NR_045048		Gm19990	-	predicted gene, 19990	ncRNA	0.015000	0.432836	-33(CCTTTTATATGG,+,0.00)
mm_153634.1	chr19	44029108	44029308	-	1	NA	NA	NA	39	NM_001001446	226143	Mm.329866	NM_001001446	ENSMUSG00000025197	Cyp2c44	AW107714|BC034834|b2b386Clo	cytochrome P450, family 2, subfamily c, polypeptide 44	protein-coding	0.020000	0.532338	
mm_153423.1	chr19	40699684	40699884	-	1	NA	NA	NA	40014	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.020000	0.442786	-35(GCATATTTAAGC,-,0.00)
mm_66894.1	chr7	59649207	59649407	-	1	NA	NA	NA	26772	NR_002895	64243	Mm.423722	NR_002895	ENSMUSG00000096019	Snord116	MBII-85|Pwcr1	small nucleolar RNA, C/D box 116	snoRNA	0.000000	0.348259	
mm_140970.1	chr17	24695892	24696092	-	1	NA	NA	NA	164	NM_023040	11692	Mm.28124	NM_023040	ENSMUSG00000040888	Gfer	Alr|ERV1	growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)	protein-coding	0.155000	0.751244	
mm_17171.1	chr2	25316762	25316962	-	1	NA	NA	NA	2325	NM_008169	14810	Mm.278672	NM_008169	ENSMUSG00000026959	Grin1	GluN1|GluRdelta1|GluRzeta1|M100174|NMD-R1|NMDAR1|NR1|Nmdar|Rgsc174	glutamate receptor, ionotropic, NMDA1 (zeta 1)	protein-coding	0.030000	0.532338	
mm_50609.1	chr6	49481438	49481638	+	1	NA	NA	NA	85934	NM_029916	77485	Mm.128054	NM_029916	ENSMUSG00000023403	Stk31	C330007K24Rik	serine threonine kinase 31	protein-coding	0.005000	0.368159	
mm_18587.1	chr2	66440700	66440900	-	1	NA	NA	NA	37	NM_018733	20265	Mm.439704	NM_018733	ENSMUSG00000064329	Scn1a	B230332M13|Nav1.1	sodium channel, voltage-gated, type I, alpha	protein-coding	0.020000	0.472637	
mm_45660.1	chr5	77115051	77115251	-	1	NA	NA	NA	-28	NM_175606	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.020000	0.547264	
mm_142014.1	chr17	35200379	35200579	-	1	NA	NA	NA	1528	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.040000	0.616915	
mm_161981.1	chr19	22698559	22698759	+	1	NA	NA	NA	6040	NM_001035244	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.005000	0.462687	
mm_55455.1	chr6	67376024	67376224	-	1	NA	NA	NA	13	NM_008354	16162	Mm.188337	NM_008354	ENSMUSG00000018341	Il12rb2	A930027I18Rik|IL-12RB2|Ifnm	interleukin 12 receptor, beta 2	protein-coding	0.080000	0.681592	
mm_129405.1	chr15	78287857	78288057	-	1	NA	NA	NA	-3108	NR_106137	102465776		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0.035000	0.587065	
mm_42550.1	chr5	116406696	116406896	+	1	NA	NA	NA	16068	NM_030704	80888	Mm.21549	NM_030704	ENSMUSG00000041548	Hspb8	AU018630|AW413033|Cryac|D5Ucla4|E2IG1|H11|H11K|HSP20-like|HSP22	heat shock protein 8	protein-coding	0.000000	0.462687	38(GGCTTTAAGGGC,-,0.00),39(GCTTTAAGGGCC,+,0.00)
mm_33804.1	chr4	134930872	134931072	+	1	NA	NA	NA	-8	NM_026780	68592	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0.085000	0.611940	
mm_145019.1	chr18	38869485	38869685	+	1	NA	NA	NA	-22871	NM_001033789	545253	Mm.244585	NM_001033789	ENSMUSG00000036452	Gm5820	EG545253	predicted gene 5820	protein-coding	0.005000	0.467662	
mm_109462.1	chr12	111198425	111198625	+	1	NA	NA	NA	-14034	NR_130987	78062	Mm.427248	NR_130987	ENSMUSG00000083193	4930595D18Rik	-	RIKEN cDNA 4930595D18 gene	ncRNA	0.015000	0.492537	
mm_119530.1	chr14	47649241	47649441	+	1	NA	NA	NA	30	NM_001347524	16709	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	0.145000	0.766169	-100(GTCCCTTTAAGG,-,0.00),-99(TCCCTTTAAGGG,-,0.00),-98(CCCTTTAAGGGG,+,0.00),-98(CCCTTTAAGGGG,-,0.00),-97(CCTTTAAGGGGC,+,0.00)
mm_130845.1	chr15	101918710	101918910	-	1	NA	NA	NA	5925	NM_008475	16682	Mm.46425	NM_008475	ENSMUSG00000059668	Krt4	AW108092|K4|Krt-2.4|Krt2-4	keratin 4	protein-coding	0.005000	0.542289	
mm_79487.1	chr9	56997428	56997628	+	1	NA	NA	NA	2560	NM_019651	56294	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	0.000000	0.437811	
mm_167641.1	chr9	64790702	64790902	-	1	NA	NA	NA	-20209	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.025000	0.467662	
mm_119027.1	chr14	30022663	30022863	+	1	NA	NA	NA	130	NM_175343	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.025000	0.427861	
mm_161912.1	chr18	67343379	67343579	+	1	NA	NA	NA	-85	NM_007702	12683	Mm.449	NM_007702	ENSMUSG00000024526	Cidea	AW212747	cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	protein-coding	0.040000	0.597015	
mm_21973.1	chr2	167349017	167349217	-	1	NA	NA	NA	61	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.180000	0.830846	
mm_17526.1	chr2	29252907	29253107	-	1	NA	NA	NA	-14	NR_029460	76220	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0.065000	0.577114	
mm_151465.1	chr19	58670253	58670453	+	1	NA	NA	NA	-12	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.030000	0.477612	-21(ACCTATAAAAGG,-,0.00)
mm_159487.1	chr4	42168488	42168688	-	1	NA	NA	NA	15	NM_001099348	100042555	Mm.458019	NM_001099348	ENSMUSG00000073876	Gm13305	OTTMUSG00000011351	predicted gene 13305	protein-coding	0.020000	0.537313	
mm_61444.1	chr7	75569533	75569733	+	1	NA	NA	NA	114099	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.005000	0.407960	38(CCATTTATACAA,+,0.00)
mm_639.1	chr1	40399740	40399940	+	1	NA	NA	NA	-29730	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.010000	0.497512	
mm_165982.1	chr4	105165773	105165973	+	1	NA	NA	NA	8526	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.015000	0.363184	
mm_119016.1	chr14	30008837	30009037	+	1	NA	NA	NA	-41	NM_019583	50905	Mm.269363	NM_019583	ENSMUSG00000015966	Il17rb	Evi27|IL-17ER|IL-17Rh1|IL17RH1|Il17br	interleukin 17 receptor B	protein-coding	0.095000	0.711443	
mm_84542.1	chr9	67299203	67299403	-	1	NA	NA	NA	-62577	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	0.030000	0.467662	
mm_171217.1	chr3	59563472	59563672	-	1	NA	NA	NA	-166214	NM_001101531	433597	Mm.297801	NM_001101531	ENSMUSG00000090527	Gm5538	-	predicted gene 5538	protein-coding	0.010000	0.482587	-17(CCTTTTATAAGC,+,0.00),-17(CCTTTTATAAGC,-,0.00)
mm_41902.1	chr5	105560173	105560373	+	1	NA	NA	NA	40802	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.010000	0.402985	
mm_120896.1	chr14	75845821	75846021	+	1	NA	NA	NA	665	NM_009429	22070	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	0.085000	0.567164	
mm_96213.1	chr11	62456553	62456753	+	1	NA	NA	NA	679	NM_177229	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.020000	0.507463	
mm_102436.1	chr11	59506351	59506551	-	1	NA	NA	NA	189	NM_001291014	268417	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0.125000	0.786070	
mm_22525.1	chr3	7646982	7647182	+	1	NA	NA	NA	-33322	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.000000	0.323383	-65(GACTTTAAATGG,-,0.00)
mm_53110.1	chr6	125083158	125083358	+	1	NA	NA	NA	11981	NM_001163268	381810	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0.015000	0.482587	-1(CCTTATATAGTA,+,0.00)
mm_110553.1	chr12	55491088	55491288	-	1	NA	NA	NA	1459	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.020000	0.572139	
mm_76734.1	chr8	95056828	95057028	-	1	NA	NA	NA	1825	NM_001042715	330830	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.005000	0.592040	
mm_59471.1	chr7	27311344	27311544	+	1	NA	NA	NA	22204	NM_001113549	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.025000	0.457711	
mm_101186.1	chr11	17095598	17095798	-	1	NA	NA	NA	43764	NM_029861	380686	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	0.030000	0.412935	-47(GACTTTAAGAAG,-,0.00),-24(CTCCTTTAAAGA,-,0.00)
mm_112898.1	chr13	20895465	20895665	+	1	NA	NA	NA	101452	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.537313	
mm_61663.1	chr7	80777195	80777395	+	1	NA	NA	NA	26036	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.015000	0.507463	
mm_79861.1	chr9	65032381	65032581	+	1	NA	NA	NA	23	NM_028906	74388	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	0.135000	0.741294	-11(GCTTTTAAGTCC,+,0.00)
mm_15984.1	chr2	166825187	166825387	+	1	NA	NA	NA	19706	NM_001085495	99371	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.015000	0.512438	4(TCCTTTAAGGAC,+,0.00)
mm_31219.1	chr4	44012559	44012759	+	1	NA	NA	NA	9	NM_001290470	12757	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.070000	0.611940	
mm_35654.1	chr4	43555825	43556025	-	1	NA	NA	NA	6658	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.030000	0.527363	-98(GTTTAAATAGGC,+,0.00)
mm_40783.1	chr5	67315696	67315896	+	1	NA	NA	NA	8841	NM_001310629	109108	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	0.010000	0.378109	
mm_115644.1	chr13	12275598	12275798	-	1	NA	NA	NA	-17585	NM_001081128	238505	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.010000	0.323383	
mm_116943.1	chr13	56104366	56104566	-	1	NA	NA	NA	31084	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.045000	0.567164	
mm_103704.1	chr11	79516491	79516691	-	1	NA	NA	NA	7171	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.010000	0.412935	
mm_48883.1	chr5	151190048	151190248	-	1	NA	NA	NA	45	NM_001163493	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.030000	0.557214	
mm_97918.1	chr11	83532370	83532570	+	1	NA	NA	NA	-1952	NM_013653	20304	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.010000	0.398010	
mm_132523.1	chr16	37776974	37777174	+	1	NA	NA	NA	19	NM_008047	14314	Mm.182434	NM_008047	ENSMUSG00000022816	Fstl1	AI316791|AW107808|Fstl|TSC-36	follistatin-like 1	protein-coding	0.090000	0.701493	-51(GGGTCTTAAGGG,-,0.00)
mm_168637.1	chr1	183297154	183297354	-	1	NA	NA	NA	194	NM_181732	108909	Mm.290502	NM_145626	ENSMUSG00000042901	Aida	2610208M17Rik|BC004835	axin interactor, dorsalization associated	protein-coding	0.055000	0.631841	
mm_102518.1	chr11	60811163	60811363	-	1	NA	NA	NA	2	NM_009171	20425	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	0.085000	0.686567	
mm_154812.1	chrX	13661237	13661437	+	1	NA	NA	NA	-26	NM_175669	319200	Mm.383294	NM_175669	ENSMUSG00000047678	Gpr82	-	G protein-coupled receptor 82	protein-coding	0.020000	0.497512	
mm_171162.1	chr3	24968387	24968587	-	1	NA	NA	NA	-184481	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.055000	0.636816	
mm_123330.1	chr14	63037756	63037956	-	1	NA	NA	NA	-10	NM_001039566	73670	Mm.82875	NM_001039566	ENSMUSG00000075571	Defb30	2410125J01Rik|4930449O14Rik|BD-30|mBD-30	defensin beta 30	protein-coding	0.010000	0.482587	
mm_4436.1	chr1	172506719	172506919	+	1	NA	NA	NA	6573	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.000000	0.497512	
mm_95783.1	chr11	54909841	54910041	+	1	NA	NA	NA	7087	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.010000	0.487562	
mm_168867.1	chr12	34000441	34000641	-	1	NA	NA	NA	42870	NM_011658	22160	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	0.015000	0.432836	
mm_135824.1	chr16	58499730	58499930	-	1	NA	NA	NA	23482	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.015000	0.507463	
mm_8222.1	chr1	138165177	138165377	-	1	NA	NA	NA	9849	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.482587	1(CCTTTAATACCA,+,0.00)
mm_146837.1	chr18	22850688	22850888	-	1	NA	NA	NA	187875	NM_001161483	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding	0.010000	0.487562	
mm_128993.1	chr15	74838507	74838707	-	1	NA	NA	NA	3036	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.020000	0.512438	
mm_162967.1	chr11	9597978	9598178	+	1	NA	NA	NA	406136	NM_178259	268379	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.010000	0.437811	
mm_161813.1	chr17	65885676	65885876	-	1	NA	NA	NA	-21	NM_009067	19765	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.005000	0.472637	
mm_43213.1	chr5	129511081	129511281	+	1	NA	NA	NA	9950	NM_172276	231769	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor, suppressor of white-apricot homolog (Drosophila)	protein-coding	0.000000	0.288557	
mm_71120.1	chr8	36181698	36181898	+	1	NA	NA	NA	67718	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.005000	0.517413	
mm_54792.1	chr6	41636278	41636478	-	1	NA	NA	NA	27	NM_022413	64177	Mm.296889	NM_022413	ENSMUSG00000029868	Trpv6	CAT|CaT1|Cac|Ecac2|Otrpc3	transient receptor potential cation channel, subfamily V, member 6	protein-coding	0.015000	0.582090	
mm_445.1	chr1	34851747	34851947	+	1	NA	NA	NA	1888	NM_145516	226971	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.010000	0.517413	
mm_69591.1	chr7	135707365	135707565	-	1	NA	NA	NA	8914	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.025000	0.502488	
mm_103334.1	chr11	74590007	74590207	-	1	NA	NA	NA	51	NM_001015046	380711	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.165000	0.781095	
mm_10161.1	chr2	4401066	4401266	+	1	NA	NA	NA	190	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.110000	0.701493	
mm_27870.1	chr3	79162572	79162772	-	1	NA	NA	NA	-16797	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.318408	
mm_49005.1	chr6	4756986	4757186	+	1	NA	NA	NA	9780	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.045000	0.522388	
mm_43858.1	chr5	143421219	143421419	+	1	NA	NA	NA	17499	NM_025841	66913	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	0.005000	0.323383	
mm_95144.1	chr11	35544390	35544590	+	1	NA	NA	NA	-72326	NR_029799	723924		NR_029799	ENSMUSG00000065583	Mir218-2	Mirn218-2|mir-218-2	microRNA 218-2	ncRNA	0.035000	0.472637	
mm_96819.1	chr11	69994448	69994648	+	1	NA	NA	NA	-1218	NM_001291125	78246	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.015000	0.472637	
mm_47719.1	chr5	130002766	130002966	-	1	NA	NA	NA	-38	NM_010368	110006	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.050000	0.621891	
mm_6118.1	chr1	64121325	64121525	-	1	NA	NA	NA	-36	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.045000	0.542289	
mm_38234.1	chr4	136142121	136142321	-	1	NA	NA	NA	-1601	NM_008321	15903	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.015000	0.492537	
mm_38566.1	chr4	141723203	141723403	-	1	NA	NA	NA	116	NM_001017966	68817	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	0.160000	0.781095	
mm_71858.1	chr8	68906365	68906565	+	1	NA	NA	NA	25910	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.010000	0.422886	
mm_68181.1	chr7	103883014	103883214	-	1	NA	NA	NA	-873	NM_013618	18367	Mm.445781	NM_013618	ENSMUSG00000058200	Olfr66	5'[b]1|5'beta1|MOR1-3|ORL532	olfactory receptor 66	protein-coding	0.090000	0.557214	
mm_160628.1	chr9	105400674	105400874	+	1	NA	NA	NA	-14	NM_001164828	66595	Mm.84941	NM_025651	ENSMUSG00000032567	Aste1	1100001A21Rik|AV006403	asteroid homolog 1 (Drosophila)	protein-coding	0.010000	0.393035	
mm_3476.1	chr1	150105330	150105530	+	1	NA	NA	NA	5399	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.482587	
mm_128257.1	chr15	36771159	36771359	-	1	NA	NA	NA	19673	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.010000	0.457711	
mm_145242.1	chr18	50715585	50715785	+	1	NA	NA	NA	-146986	NM_026108	67365	Mm.158150	NM_026108	ENSMUSG00000048875	Hdhd1a	1700121L12Rik|GS1|Hdhd1|Pudp	haloacid dehalogenase-like hydrolase domain containing 1A	protein-coding	0.000000	0.323383	-43(GATTTTAAAAAG,-,0.00)
mm_39717.1	chr5	28071264	28071464	+	1	NA	NA	NA	-48	NM_153526	231070	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.130000	0.721393	-32(TGCCTTATAAGC,-,0.00),-30(CCTTATAAGCGG,+,0.00)
mm_72334.1	chr8	79028542	79028742	+	1	NA	NA	NA	205	NM_178267	622675	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.030000	0.587065	
mm_115330.1	chr13	112467372	112467572	+	1	NA	NA	NA	3402	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.030000	0.527363	89(GCTTTTAAACAG,+,0.00)
mm_86472.1	chr10	4611775	4611975	+	1	NA	NA	NA	-114	NM_001302532	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.010000	0.482587	
mm_146990.1	chr18	34007366	34007566	-	1	NA	NA	NA	-260	NM_013512	13824	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	0.065000	0.616915	
mm_136470.1	chr16	95714947	95715147	-	1	NA	NA	NA	12640	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.030000	0.537313	
mm_94327.1	chr11	4265154	4265354	+	1	NA	NA	NA	-1542	NM_001039537	16878	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.020000	0.562189	
mm_139472.1	chr17	55970553	55970753	+	1	NA	NA	NA	171	NM_009168	20420	Mm.20908	NM_009168	ENSMUSG00000039154	Shd	AI413439	src homology 2 domain-containing transforming protein D	protein-coding	0.080000	0.691542	
mm_152267.1	chr19	8798482	8798682	-	1	NA	NA	NA	-25	NM_026329	67710	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	0.060000	0.597015	
mm_4183.1	chr1	171160195	171160395	+	1	NA	NA	NA	4777	NM_001315500	17528	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0.020000	0.547264	
mm_8447.1	chr1	152882716	152882916	-	1	NA	NA	NA	-4648	NM_001160257	226517	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.010000	0.412935	
mm_87047.1	chr10	28793440	28793640	+	1	NA	NA	NA	125180	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.005000	0.288557	
mm_100086.1	chr11	115475716	115475916	+	1	NA	NA	NA	139	NM_177778	276905	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0.060000	0.616915	
mm_4888.1	chr1	188383006	188383206	+	1	NA	NA	NA	120268	NM_021408	22283	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Usherin|Ushrn	Usher syndrome 2A	protein-coding	0.010000	0.452736	
mm_141521.1	chr17	31692896	31693096	-	1	NA	NA	NA	15065	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.005000	0.547264	
mm_59129.1	chr7	19965331	19965531	+	1	NA	NA	NA	19	NM_027839	71601	Mm.98097	NM_027839	ENSMUSG00000070777	Ceacam20	9130012D09Rik	carcinoembryonic antigen-related cell adhesion molecule 20	protein-coding	0.005000	0.592040	
mm_117207.1	chr13	64084540	64084740	-	1	NA	NA	NA	4561	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.000000	0.467662	
mm_64129.1	chr7	141165858	141166058	+	1	NA	NA	NA	2728	NM_001172101	107702	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.035000	0.462687	
mm_170615.1	chr19	61198558	61198758	-	1	NA	NA	NA	-22349	NM_001177513	633057	Mm.426097	NM_001177513	ENSMUSG00000094649	Gm7102	EG633057	predicted gene 7102	protein-coding	0.040000	0.557214	
mm_18620.1	chr2	68472029	68472229	-	1	NA	NA	NA	-148	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.170000	0.815920	
mm_25539.1	chr3	115799440	115799640	+	1	NA	NA	NA	-84485	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.010000	0.482587	31(GCTTTTAAGCAG,+,0.00)
mm_81192.1	chr9	107551446	107551646	+	1	NA	NA	NA	-9	NM_001243748	56289	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0.120000	0.701493	
mm_79503.1	chr9	57296503	57296703	+	1	NA	NA	NA	-34004	NM_028820	74211	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.015000	0.537313	-32(TCCTATATAAGT,-,0.00)
mm_54151.1	chr6	22356022	22356222	-	1	NA	NA	NA	-41	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.170000	0.791045	
mm_132262.1	chr16	32776184	32776384	+	1	NA	NA	NA	21151	NM_146071	224116	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	0.015000	0.522388	
mm_157352.1	chrX	36991626	36991826	-	1	NA	NA	NA	-2031	NM_001177323	56526	Mm.260036	NM_019942	ENSMUSG00000050379	Sept6	2810035H17Rik|C920001C06Rik|Sep6|mKIAA0128	septin 6	protein-coding	0.010000	0.447761	
mm_110957.1	chr12	76795236	76795436	-	1	NA	NA	NA	218	NM_030677	14776	Mm.441856	NM_030677	ENSMUSG00000042808	Gpx2	GI-GPx|GPx-GI|GSHPx-2|GSHPx-GI	glutathione peroxidase 2	protein-coding	0.035000	0.537313	
mm_35378.1	chr4	33189333	33189533	-	1	NA	NA	NA	304	NM_001034867	242377	Mm.372465	NM_001034867	ENSMUSG00000054659	Pm20d2	Acy1l2|Gm424	peptidase M20 domain containing 2	protein-coding	0.145000	0.731343	
mm_5532.1	chr1	37997150	37997350	-	1	NA	NA	NA	-42	NM_172054	98258	Mm.28438	NM_172054	ENSMUSG00000058407	Txndc9	AI098020|APACD	thioredoxin domain containing 9	protein-coding	0.070000	0.562189	
mm_64967.1	chr7	16614961	16615161	-	1	NA	NA	NA	-68	NM_172739	232906	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.150000	0.716418	
mm_63853.1	chr7	135666754	135666954	+	1	NA	NA	NA	-14540	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.025000	0.487562	-30(ACTTTAAGAGCG,+,0.00)
mm_9534.1	chr1	173871707	173871907	-	1	NA	NA	NA	8380	NM_001170853	100040462	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	0.010000	0.308458	
mm_136422.1	chr16	93982425	93982625	-	1	NA	NA	NA	26312	NM_019500	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.030000	0.577114	
mm_6454.1	chr1	74016516	74016716	-	1	NA	NA	NA	107831	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.035000	0.572139	
mm_80835.1	chr9	97110531	97110731	+	1	NA	NA	NA	410	NM_138756	192287	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.125000	0.676617	
mm_55378.1	chr6	58906156	58906356	-	1	NA	NA	NA	870	NM_021432	58243	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.020000	0.353234	
mm_138825.1	chr17	39847757	39847957	+	1	NA	NA	NA	4860	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.095000	0.616915	
mm_134225.1	chr16	11254271	11254471	-	1	NA	NA	NA	-46	NM_146066	14852	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	0.125000	0.621891	
mm_146810.1	chr18	20746264	20746464	-	1	NA	NA	NA	40	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.110000	0.726368	
mm_100930.1	chr11	6519074	6519274	-	1	NA	NA	NA	1784	NM_178440	246177	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0.035000	0.547264	
mm_3194.1	chr1	135810791	135810991	+	1	NA	NA	NA	-7707	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding	0.010000	0.537313	
mm_29605.1	chr3	121232329	121232529	-	1	NA	NA	NA	30887	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0.010000	0.502488	
mm_56946.1	chr6	119965941	119966141	-	1	NA	NA	NA	63343	NM_001166381	19365	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.000000	0.298507	
mm_99704.1	chr11	106160173	106160373	+	1	NA	NA	NA	-131	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.135000	0.771144	
mm_74634.1	chr8	13200506	13200706	-	1	NA	NA	NA	18	NM_025768	66790	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	0.135000	0.781095	
mm_26997.1	chr3	25832872	25833072	-	1	NA	NA	NA	320335	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.323383	
mm_17701.1	chr2	32381705	32381905	-	1	NA	NA	NA	110	NM_198001	73737	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0.135000	0.701493	
mm_43395.1	chr5	135778555	135778755	+	1	NA	NA	NA	6	NM_008617	17448	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	0.090000	0.631841	
mm_30240.1	chr3	146477279	146477479	-	1	NA	NA	NA	22374	NM_001316756	70951	Mm.383235	NM_027617	ENSMUSG00000028188	Spata1	4921536I21Rik|AV266943|SP-2	spermatogenesis associated 1	protein-coding	0.000000	0.412935	
mm_58273.1	chr6	145433965	145434165	-	1	NA	NA	NA	860	NM_028742	74071	Mm.441497	NM_028742	ENSMUSG00000054966	Lmntd1	4933403M22Rik|AI482300|Ifltd1|Lmna-rs1|Lmna1|OTTMUSG00000022798	lamin tail domain containing 1	protein-coding	0.035000	0.517413	
mm_139263.1	chr17	47767238	47767438	+	1	NA	NA	NA	-18406	NM_011549	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.010000	0.522388	
mm_136968.1	chr17	15731747	15731947	+	1	NA	NA	NA	26880	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.005000	0.383085	25(CCATTTATGCTG,+,0.00)
mm_153420.1	chr19	40661154	40661354	-	1	NA	NA	NA	1484	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.010000	0.457711	
mm_8358.1	chr1	150454472	150454672	-	1	NA	NA	NA	11593	NM_021400	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.005000	0.507463	
mm_9716.1	chr1	179803119	179803319	-	1	NA	NA	NA	796	NM_026375	226747	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.180000	0.791045	
mm_136698.1	chr17	7170017	7170217	+	1	NA	NA	NA	2	NM_011299	20112	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.100000	0.706468	
mm_172768.1	chr8	94178972	94179172	+	1	NA	NA	NA	-17	NM_013602	17748	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.090000	0.626866	
mm_135153.1	chr16	35857739	35857939	-	1	NA	NA	NA	13543	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.010000	0.422886	
mm_24187.1	chr3	88607063	88607263	+	1	NA	NA	NA	-9044	NM_001198911	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.020000	0.567164	
mm_24967.1	chr3	96727517	96727717	+	1	NA	NA	NA	6	NM_026406	67845	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.115000	0.761194	
mm_144156.1	chr18	5593791	5593991	+	1	NA	NA	NA	-1454	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	0.015000	0.442786	
mm_37574.1	chr4	126249400	126249600	-	1	NA	NA	NA	6819	NM_144941	245877	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0.000000	0.412935	
mm_3590.1	chr1	151359918	151360118	+	1	NA	NA	NA	15520	NM_001039511	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.010000	0.462687	
mm_36494.1	chr4	83285032	83285232	-	1	NA	NA	NA	39057	NM_027238	69863	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.040000	0.542289	
mm_110881.1	chr12	74890001	74890201	-	1	NA	NA	NA	287231	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0.005000	0.313433	
mm_20332.1	chr2	127521244	127521444	-	1	NA	NA	NA	48	NM_001291005	56461	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0.035000	0.592040	
mm_166223.1	chr5	64961233	64961433	-	1	NA	NA	NA	-1299	NM_011604	21899	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0.010000	0.467662	
mm_122238.1	chr14	33247768	33247968	-	1	NA	NA	NA	31045	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.035000	0.567164	
mm_171143.1	chr3	152213894	152214094	+	1	NA	NA	NA	3536	NM_057172	51886	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	0.005000	0.328358	
mm_39712.1	chr5	27791675	27791875	+	1	NA	NA	NA	-225	NM_018878	55982	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	0.085000	0.656716	
mm_42106.1	chr5	110544206	110544406	+	1	NA	NA	NA	-49	NM_198306	231605	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	0.170000	0.786070	
mm_82978.1	chr9	35849832	35850032	-	1	NA	NA	NA	-52	NR_030730	100041605	Mm.99350	NR_030730	ENSMUSG00000098705	Gm3428	-	predicted gene 3428	ncRNA	0.000000	0.552239	
mm_64231.1	chr7	141694481	141694681	+	1	NA	NA	NA	4241	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.005000	0.557214	
mm_161513.1	chr15	98777178	98777378	-	1	NA	NA	NA	872	NM_011718	22410	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	0.040000	0.626866	
mm_44725.1	chr5	31038169	31038369	-	1	NA	NA	NA	9810	NM_177870	330064	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	0.005000	0.467662	
mm_112656.1	chr13	16026680	16026880	+	1	NA	NA	NA	14929	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.035000	0.542289	
mm_123431.1	chr14	64440796	64440996	-	1	NA	NA	NA	130	NM_001253715	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.075000	0.651741	
mm_111158.1	chr12	83487621	83487821	-	1	NA	NA	NA	15	NM_001267626	70127	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0.060000	0.482587	
mm_74510.1	chr8	8661141	8661341	-	1	NA	NA	NA	-468	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.165000	0.741294	
mm_143680.1	chr17	80061981	80062181	-	1	NA	NA	NA	187	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.130000	0.736318	
mm_15786.1	chr2	164405181	164405381	+	1	NA	NA	NA	-121	NM_001252563	17183	Mm.29428	NM_013592	ENSMUSG00000016995	Matn4	matrilin-4	matrilin 4	protein-coding	0.035000	0.542289	
mm_116845.1	chr13	54749562	54749762	-	1	NA	NA	NA	212	NM_001316710	26913	Mm.41812	NM_012014	ENSMUSG00000069227	Gprin1	GRIN1|Z16	G protein-regulated inducer of neurite outgrowth 1	protein-coding	0.180000	0.825871	
mm_28204.1	chr3	88296780	88296980	-	1	NA	NA	NA	-42	NM_029801	76927	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	0.085000	0.606965	
mm_42965.1	chr5	123135697	123135897	+	1	NA	NA	NA	-3168	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.025000	0.572139	
mm_76535.1	chr8	87960393	87960593	-	1	NA	NA	NA	-898	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	0.100000	0.716418	
mm_5823.1	chr1	52734202	52734402	-	1	NA	NA	NA	-6984	NM_133829	98682	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	0.015000	0.472637	-5(TCCTTTTAATGC,-,0.00)
mm_21632.1	chr2	164277479	164277679	-	1	NA	NA	NA	728	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.015000	0.472637	-33(GCCTATATAAGC,-,0.00)
mm_56287.1	chr6	91473428	91473628	-	1	NA	NA	NA	-105	NM_133928	72170	Mm.41622	NM_133928	ENSMUSG00000034203	Chchd4	2410012P20Rik|2810014D17Rik|AI838740	coiled-coil-helix-coiled-coil-helix domain containing 4	protein-coding	0.090000	0.646766	
mm_155723.1	chrX	96152630	96152830	+	1	NA	NA	NA	56685	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.015000	0.507463	
mm_9206.1	chr1	171229702	171229902	-	1	NA	NA	NA	4547	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.015000	0.482587	
mm_121019.1	chr14	79549320	79549520	+	1	NA	NA	NA	33746	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.020000	0.437811	
mm_69581.1	chr7	135704104	135704304	-	1	NA	NA	NA	12175	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.412935	
mm_134566.1	chr16	20356092	20356292	-	1	NA	NA	NA	-30788	NM_183158	224044	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.000000	0.407960	
mm_77115.1	chr8	111081961	111082161	-	1	NA	NA	NA	-353	NM_181549	353287	Mm.135495	NM_181549	ENSMUSG00000033633	Clec18a	Mrcl	C-type lectin domain family 18, member A	protein-coding	0.005000	0.601990	-66(GCTTTACTGGCC,+,0.00)
mm_4717.1	chr1	181051137	181051337	+	1	NA	NA	NA	0	NM_001033819	619326	Mm.355174	NM_001033819	ENSMUSG00000038768	9130409I23Rik	-	RIKEN cDNA 9130409I23 gene	protein-coding	0.015000	0.572139	
mm_166452.1	chr5	137533104	137533304	-	1	NA	NA	NA	25	NM_010312	14693	Mm.30141	NM_010312	ENSMUSG00000029713	Gnb2	Gnb-2	guanine nucleotide binding protein (G protein), beta 2	protein-coding	0.090000	0.671642	
mm_129687.1	chr15	81421584	81421784	-	1	NA	NA	NA	-13411	NM_021317	57755	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	0.000000	0.388060	
mm_140579.1	chr17	10211629	10211829	-	1	NA	NA	NA	107632	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.015000	0.437811	
mm_55609.1	chr6	71908653	71908853	-	1	NA	NA	NA	9	NM_027275	69956	Mm.30256	NM_027275	ENSMUSG00000063884	Ptcd3	2610034F17Rik|2810422B04Rik|AA589622|AU045708|MRP-S39	pentatricopeptide repeat domain 3	protein-coding	0.105000	0.666667	
mm_143465.1	chr17	71002106	71002306	-	1	NA	NA	NA	327	NM_026064	67268	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0.120000	0.686567	
mm_114554.1	chr13	74121313	74121513	+	1	NA	NA	NA	-102	NM_001081060	105243	Mm.261564	NM_001081060	ENSMUSG00000036123	Slc9a3	9030624O13Rik|AI930210|NHE-3|NHE3	solute carrier family 9 (sodium/hydrogen exchanger), member 3	protein-coding	0.095000	0.706468	
mm_158130.1	chrX	103027163	103027363	-	1	NA	NA	NA	-93040	NR_026596	331480	Mm.145294	NR_026596		Gm5126	EG331480	predicted pseudogene 5126	ncRNA	0.000000	0.477612	-36(GTCCATAAAAGG,-,0.00),-34(CCATAAAAGGGC,+,0.00)
mm_7310.1	chr1	98047705	98047905	-	1	NA	NA	NA	-12	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA	0.020000	0.507463	
mm_46115.1	chr5	92363189	92363389	-	1	NA	NA	NA	7	NR_038116	56066	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0.015000	0.537313	-33(GTCTATAAATGC,-,0.00)
mm_16292.1	chr2	174120754	174120954	+	1	NA	NA	NA	10503	NM_213733	228961	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	0.045000	0.597015	
mm_26970.1	chr3	24783484	24783684	-	1	NA	NA	NA	422	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.015000	0.457711	68(CCCTTTAAAAAG,+,0.00),68(CCCTTTAAAAAG,-,0.00),69(CCTTTAAAAAGA,+,0.00),70(CTTTAAAAAGAG,+,0.00)
mm_98168.1	chr11	87751104	87751304	+	1	NA	NA	NA	-5660	NR_029555	387160		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.010000	0.562189	
mm_138894.1	chr17	43568197	43568397	+	1	NA	NA	NA	-154	NM_013737	27226	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.065000	0.497512	-21(CCTTTTAGATTC,+,0.00)
mm_84971.1	chr9	85323080	85323280	-	1	NA	NA	NA	3944	NM_001160378	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.000000	0.288557	
mm_9478.1	chr1	173367547	173367747	-	1	NA	NA	NA	48	NM_053199	94332	Mm.330524	NM_053199	ENSMUSG00000005338	Cadm3	BIgR|Igsf4b|Necl-1|Necl1|SynCAM3|Tsll1	cell adhesion molecule 3	protein-coding	0.095000	0.721393	
mm_114051.1	chr13	54304722	54304922	+	1	NA	NA	NA	-66527	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.010000	0.457711	
mm_126814.1	chr15	87715503	87715703	+	1	NA	NA	NA	80340	NR_105817	102465209		NR_105817	ENSMUSG00000098938	Mir6393	Gm27424|mmu-mir-6393	microRNA 6393	ncRNA	0.010000	0.547264	
mm_91725.1	chr10	44631574	44631774	-	1	NA	NA	NA	-172926	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.015000	0.477612	-12(CCTTTAATACCC,+,0.00)
mm_115735.1	chr13	17789162	17789362	-	1	NA	NA	NA	15835	NM_001081058	69562	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.005000	0.328358	
mm_167766.1	chr9	110680119	110680319	-	1	NA	NA	NA	23716	NM_028312	72654	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.005000	0.572139	
mm_138639.1	chr17	35866033	35866233	+	1	NA	NA	NA	5	NM_001146710	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.065000	0.656716	
mm_161984.1	chr19	28963905	28964105	-	1	NA	NA	NA	85	NM_028922	74411	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	0.125000	0.776119	
mm_69712.1	chr7	140116344	140116544	-	1	NA	NA	NA	-21	NM_053119	93747	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	0.075000	0.671642	
mm_144257.1	chr18	11047498	11047698	+	1	NA	NA	NA	-4912	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.025000	0.472637	
mm_151859.1	chr19	5797083	5797283	-	1	NA	NA	NA	-1202	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.005000	0.432836	
mm_61698.1	chr7	81141757	81141957	+	1	NA	NA	NA	27058	NM_001004184	434203	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	0.010000	0.467662	-34(CTCTTTTAAAAC,-,0.00),-32(CTTTTAAAACTG,+,0.00)
mm_39291.1	chr5	4333350	4333550	+	1	NA	NA	NA	141083	NM_001042670	208595	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	ENSMUSG00000053178|Gm9897	mitochondrial transcription termination factor 1b	protein-coding	0.015000	0.477612	
mm_171817.1	chr5	138504662	138504862	+	1	NA	NA	NA	59932	NM_029693	76658	Mm.73235	NM_029693	ENSMUSG00000029526	1700123K08Rik	-	RIKEN cDNA 1700123K08 gene	protein-coding	0.060000	0.577114	
mm_172182.1	chr6	49236509	49236709	-	1	NA	NA	NA	-21655	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.040000	0.467662	
mm_155860.1	chrX	101376266	101376466	+	1	NA	NA	NA	-10	NM_001302496	14618	Mm.21198	NM_008124	ENSMUSG00000047797	Gjb1	Cnx32|Cx32|connexin-32	gap junction protein, beta 1	protein-coding	0.010000	0.462687	-26(CTTTTAAGAGTC,+,0.00)
mm_98034.1	chr11	85312044	85312244	+	1	NA	NA	NA	890	NM_016910	53892	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	0.045000	0.552239	
mm_79771.1	chr9	62838521	62838721	+	1	NA	NA	NA	-166	NM_001033175	76524	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.015000	0.601990	
mm_125813.1	chr15	74932034	74932234	+	1	NA	NA	NA	-22917	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.010000	0.492537	
mm_158834.1	chrX	168419561	168419761	-	1	NA	NA	NA	157572	NM_001033330	333605	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	0.000000	0.288557	
mm_56415.1	chr6	97252372	97252572	-	1	NA	NA	NA	308	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.020000	0.522388	
mm_58206.1	chr6	143909042	143909242	-	1	NA	NA	NA	37964	NM_001347506	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.010000	0.412935	
mm_107747.1	chr12	59013289	59013489	+	1	NA	NA	NA	-2	NM_025656	66603	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem (nuclear organelle) associated protein 2	protein-coding	0.085000	0.626866	
mm_26849.1	chr3	14769116	14769316	-	1	NA	NA	NA	9244	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.005000	0.303483	-64(CTCCATATATGC,-,0.00),6(TCTTTTAGAAGC,+,0.00)
mm_68538.1	chr7	113564865	113565065	-	1	NA	NA	NA	22	NR_126544	69295	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0.010000	0.402985	
mm_85527.1	chr9	106465878	106466078	-	1	NA	NA	NA	-38	NM_001159652	436090	Mm.482905	NM_001159652	ENSMUSG00000091735	Gpr62	4933402E03Rik	G protein-coupled receptor 62	protein-coding	0.010000	0.611940	
mm_144216.1	chr18	9745394	9745594	+	1	NA	NA	NA	37846	NM_130449	140792	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.000000	0.333333	
mm_73500.1	chr8	107205271	107205471	+	1	NA	NA	NA	-50793	NR_039557	100628577		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.025000	0.577114	
mm_127585.1	chr15	102328435	102328635	+	1	NA	NA	NA	2419	NM_027044	56612	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	0.035000	0.552239	
mm_77319.1	chr8	118308958	118309158	-	1	NA	NA	NA	25447	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.010000	0.517413	
mm_19964.1	chr2	117965811	117966011	-	1	NA	NA	NA	143983	NR_040631	73938	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0.010000	0.432836	
mm_31834.1	chr4	70625088	70625288	+	1	NA	NA	NA	-90260	NM_172694	230316	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.010000	0.492537	
mm_89315.1	chr10	87929020	87929220	+	1	NA	NA	NA	-37551	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.383085	
mm_138349.1	chr17	34933969	34934169	+	1	NA	NA	NA	2816	NM_010893	18010	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0.055000	0.582090	
mm_145869.1	chr18	65464017	65464217	+	1	NA	NA	NA	33120	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.040000	0.422886	
mm_7205.1	chr1	93070917	93071117	-	1	NA	NA	NA	11463	NM_001294150	16560	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.010000	0.527363	
mm_146975.1	chr18	33464276	33464476	-	1	NA	NA	NA	213	NR_045415	433171	Mm.353332	NR_045415		Gm10549	ENSMUSG00000073610	predicted gene 10549	ncRNA	0.140000	0.716418	
mm_71635.1	chr8	57487982	57488182	+	1	NA	NA	NA	119	NR_126555	78353	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	0.050000	0.522388	
mm_37175.1	chr4	117251690	117251890	-	1	NA	NA	NA	127	NM_001145637	381544	Mm.23504	NM_001033774	ENSMUSG00000060268	Gm1661	Gm1662|Ncrna00082	predicted gene 1661	protein-coding	0.050000	0.577114	
mm_70868.1	chr8	25017179	25017379	+	1	NA	NA	NA	68	NM_027194	69742	Mm.28626	NM_027194	ENSMUSG00000031556	Tm2d2	2410018G23Rik|Blp1	TM2 domain containing 2	protein-coding	0.090000	0.666667	
mm_119169.1	chr14	32085735	32085935	+	1	NA	NA	NA	107	NM_145460	218885	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	0.045000	0.542289	
mm_2711.1	chr1	128104043	128104243	+	1	NA	NA	NA	837	NM_181750	226412	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	0.020000	0.427861	35(GCTTTTAAGGAG,+,0.00)
mm_108876.1	chr12	99647107	99647307	+	1	NA	NA	NA	-19233	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.020000	0.502488	
mm_152695.1	chr19	17125354	17125554	-	1	NA	NA	NA	169336	NM_181348	353211	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.025000	0.517413	
mm_8755.1	chr1	160309068	160309268	-	1	NA	NA	NA	-13196	NR_035448	100316784		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	0.020000	0.512438	
mm_12444.1	chr2	71084075	71084275	+	1	NA	NA	NA	28431	NM_001165980	75763	Mm.281668	NM_198005	ENSMUSG00000041966	Dcaf17	2810055O12Rik|4833418A01Rik|A030004A10Rik|A930009G19Rik|AI448937	DDB1 and CUL4 associated factor 17	protein-coding	0.020000	0.482587	
mm_122727.1	chr14	52316127	52316327	-	1	NA	NA	NA	96	NM_001244916	50524	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding	0.085000	0.706468	
mm_172342.1	chr7	111028878	111029078	+	1	NA	NA	NA	27	NM_009431	22083	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0.090000	0.666667	
mm_99517.1	chr11	103133076	103133276	+	1	NA	NA	NA	-163	NM_001130516	71059	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0.040000	0.417910	
mm_63650.1	chr7	128695506	128695706	+	1	NA	NA	NA	6736	NM_001346517	101490	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0.005000	0.447761	
mm_43310.1	chr5	134858317	134858517	+	1	NA	NA	NA	48316	NM_029681	76629	Mm.159750	NM_029681	ENSMUSG00000040576	Wbscr28	1700111I05Rik	Williams-Beuren syndrome chromosome region 28 (human)	protein-coding	0.030000	0.577114	
mm_30732.1	chr4	13796962	13797162	+	1	NA	NA	NA	12280	NM_009822	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.000000	0.407960	
mm_150250.1	chr19	34100978	34101178	+	1	NA	NA	NA	135	NM_023903	78753	Mm.195937	NM_023903	ENSMUSG00000056078	Lipm	4632427C23Rik|AW227514|Lipl3	lipase, family member M	protein-coding	0.015000	0.373134	
mm_42006.1	chr5	108001113	108001313	+	1	NA	NA	NA	-14136	NM_026062	67266	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0.050000	0.472637	-35(TCCCTTATAAAG,-,0.00),-33(CCTTATAAAGGT,+,0.00),-1(GCCCTTTTAAGC,-,0.00),1(CCTTTTAAGCAT,+,0.00)
mm_168811.1	chr12	21416994	21417194	-	1	NA	NA	NA	342	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.120000	0.696517	
mm_128820.1	chr15	67128796	67128996	-	1	NA	NA	NA	47986	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.005000	0.562189	
mm_129131.1	chr15	76195599	76195799	-	1	NA	NA	NA	11	NM_201394	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.045000	0.636816	
mm_149405.1	chr19	11392638	11392838	+	1	NA	NA	NA	-14923	NM_029499	64380	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	0.000000	0.383085	
mm_21997.1	chr2	167697924	167698124	-	1	NA	NA	NA	6847	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.015000	0.567164	
mm_37757.1	chr4	129662364	129662564	-	1	NA	NA	NA	10303	NM_008468	16650	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	0.000000	0.422886	
mm_75458.1	chr8	47714067	47714267	-	1	NA	NA	NA	-236	NM_172407	70925	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.160000	0.810945	
mm_66308.1	chr7	39447124	39447324	-	1	NA	NA	NA	-2294	NM_001243021	233147	Mm.148946	NM_001243021	ENSMUSG00000030424	Zfp939	9430025M13Rik	zinc finger protein 939	protein-coding	0.005000	0.462687	-33(GCCTATTTAAGG,-,0.00),-31(CTATTTAAGGAC,+,0.00)
mm_74947.1	chr8	25976549	25976749	-	1	NA	NA	NA	95	NM_029884	52120	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	0.135000	0.761194	
mm_44744.1	chr5	31201840	31202040	-	1	NA	NA	NA	102	NM_001177901	101023	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	0.030000	0.606965	79(GAGTATTAAAGG,-,0.00)
mm_75680.1	chr8	68061275	68061475	-	1	NA	NA	NA	-86801	NM_177698	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.010000	0.412935	
mm_140458.1	chr17	90036798	90036998	+	1	NA	NA	NA	51470	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.005000	0.293532	
mm_12393.1	chr2	70039020	70039220	+	1	NA	NA	NA	-6	NM_177376	329421	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0.030000	0.557214	
mm_162085.1	chrX	35404118	35404318	+	1	NA	NA	NA	0	NM_001099325	100042109	Mm.432195	NM_001099325	ENSMUSG00000073257	Gm10488	ENSMUSG00000073257	predicted gene 10488	protein-coding	0.015000	0.467662	
mm_132962.1	chr16	50526120	50526320	+	1	NA	NA	NA	-25	NR_040380	619312	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.025000	0.427861	
mm_143759.1	chr17	81620364	81620564	-	1	NA	NA	NA	117923	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.000000	0.373134	
mm_102949.1	chr11	69617803	69618003	-	1	NA	NA	NA	2	NM_011367	20415	Mm.1431	NM_011367	ENSMUSG00000005202	Shbg	ABP	sex hormone binding globulin	protein-coding	0.015000	0.557214	
mm_142921.1	chr17	53824023	53824223	-	1	NA	NA	NA	21835	NM_026935	69083	Mm.19320	NM_026935	ENSMUSG00000023122	Sult1c2	1810008N17Rik|ST1C1|ST1C2|Sult1c1	sulfotransferase family, cytosolic, 1C, member 2	protein-coding	0.000000	0.477612	
mm_148209.1	chr18	80151392	80151592	-	1	NA	NA	NA	-10	NM_175028	240442	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0.120000	0.711443	
mm_157256.1	chrX	19153554	19153754	-	1	NA	NA	NA	-6683	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.000000	0.402985	
mm_127794.1	chr15	3583116	3583316	-	1	NA	NA	NA	136	NM_001048178	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.065000	0.691542	
mm_86595.1	chr10	13130227	13130427	+	1	NA	NA	NA	39482	NR_131912	338438		NR_131912		Hymai	-	hydatidiform mole associated and imprinted transcript	ncRNA	0.010000	0.383085	
mm_115580.1	chr13	11615150	11615350	-	1	NA	NA	NA	93198	NR_027813	664793	Mm.410565	NR_027813		Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo	0.000000	0.363184	
mm_4025.1	chr1	165766030	165766230	+	1	NA	NA	NA	2350	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.040000	0.542289	
mm_62647.1	chr7	107681585	107681785	+	1	NA	NA	NA	74841	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.005000	0.407960	-13(CCTTATAAACTG,+,0.00),33(GTTTTTCTAGCC,+,0.00),43(CCTTTTAAGTGT,+,0.00)
mm_145377.1	chr18	56746444	56746644	+	1	NA	NA	NA	38731	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.010000	0.437811	
mm_98443.1	chr11	94942295	94942495	+	1	NA	NA	NA	6171	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.015000	0.621891	
mm_126840.1	chr15	89059672	89059872	+	1	NA	NA	NA	46	NM_001002005	406218	Mm.483059	NM_001002005	ENSMUSG00000058441	Panx2	-	pannexin 2	protein-coding	0.150000	0.810945	
mm_122548.1	chr14	48665007	48665207	-	1	NA	NA	NA	2	NM_001286483	18424	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	0.060000	0.616915	
mm_82754.1	chr9	26860573	26860773	-	1	NA	NA	NA	150	NM_001113323	70893	Mm.78118	NM_001113323	ENSMUSG00000031966	Glb1l3	4921509F24Rik	galactosidase, beta 1 like 3	protein-coding	0.025000	0.547264	
mm_76340.1	chr8	84721626	84721826	-	1	NA	NA	NA	20269	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.060000	0.631841	
mm_103226.1	chr11	70669882	70670082	-	1	NA	NA	NA	-566	NM_001167669	216873	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0.040000	0.606965	
mm_9211.1	chr1	171229823	171230023	-	1	NA	NA	NA	4426	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.020000	0.542289	
mm_61705.1	chr7	81213500	81213700	+	1	NA	NA	NA	-204	NM_008803	18584	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.170000	0.766169	
mm_65685.1	chr7	28367563	28367763	-	1	NA	NA	NA	4999	NM_138752	101497	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.040000	0.592040	
mm_114776.1	chr13	88821636	88821836	+	1	NA	NA	NA	264	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.075000	0.656716	
mm_14770.1	chr2	145786037	145786237	+	1	NA	NA	NA	21	NM_028724	74030	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.030000	0.542289	
mm_160636.1	chr9	107753144	107753344	-	1	NA	NA	NA	17758	NM_148930	83486	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	0.005000	0.338308	
mm_55750.1	chr6	78372798	78372998	-	1	NA	NA	NA	2013	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.010000	0.487562	
mm_117765.1	chr13	96435862	96436062	-	1	NA	NA	NA	35198	NM_001042714	271144	Mm.470057	NM_001042714	ENSMUSG00000047117	Ankdd1b	9330128J19Rik	ankyrin repeat and death domain containing 1B	protein-coding	0.035000	0.517413	
mm_3554.1	chr1	150421617	150421817	+	1	NA	NA	NA	-28662	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.015000	0.457711	
mm_19085.1	chr2	78972953	78973153	-	1	NA	NA	NA	104006	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.015000	0.447761	
mm_64959.1	chr7	16614477	16614677	-	1	NA	NA	NA	416	NM_172739	232906	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.160000	0.810945	
mm_20226.1	chr2	125782721	125782921	-	1	NA	NA	NA	49	NM_177608	70354	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.125000	0.751244	
mm_36480.1	chr4	82859743	82859943	-	1	NA	NA	NA	-182	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0.040000	0.597015	
mm_95027.1	chr11	32024727	32024927	+	1	NA	NA	NA	23550	NM_001290681	18197	Mm.3304	NM_008741	ENSMUSG00000020297	Nsg2	-	neuron specific gene family member 2	protein-coding	0.010000	0.393035	
mm_64922.1	chr7	16257427	16257627	-	1	NA	NA	NA	1811	NM_001173550	12273	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	0.010000	0.378109	
mm_160611.1	chr9	81632700	81632900	-	1	NA	NA	NA	-248	NM_010482	15551	Mm.445308	NM_010482	ENSMUSG00000049511	Htr1b	-	5-hydroxytryptamine (serotonin) receptor 1B	protein-coding	0.060000	0.641791	
mm_157662.1	chrX	57503637	57503837	-	1	NA	NA	NA	20	NM_001033360	245424	Mm.336070	NM_001033360	ENSMUSG00000036357	Gpr101	GPCR6|Gm365	G protein-coupled receptor 101	protein-coding	0.105000	0.696517	
mm_141754.1	chr17	34261537	34261737	-	1	NA	NA	NA	-1590	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.005000	0.492537	
mm_142665.1	chr17	47728699	47728899	-	1	NA	NA	NA	1957	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.015000	0.517413	
mm_124641.1	chr15	4727088	4727288	+	1	NA	NA	NA	-22	NM_016704	12274	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	0.035000	0.417910	
mm_36033.1	chr4	57143605	57143805	-	1	NA	NA	NA	-549	NM_019427	54357	Mm.28217	NM_019427	ENSMUSG00000028434	Epb41l4b	6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2	erythrocyte membrane protein band 4.1 like 4b	protein-coding	0.120000	0.796020	
mm_48958.1	chr6	4540815	4541015	+	1	NA	NA	NA	35297	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.005000	0.383085	
mm_162000.1	chr19	39992324	39992524	+	1	NA	NA	NA	0	NM_010001	13096	Mm.38963	NM_010001	ENSMUSG00000042248	Cyp2c37	-	cytochrome P450, family 2. subfamily c, polypeptide 37	protein-coding	0.000000	0.447761	
mm_154708.1	chrX	8276675	8276875	+	1	NA	NA	NA	5394	NM_172479	209837	Mm.6055	NM_172479	ENSMUSG00000031170	Slc38a5	C81234|E330031E14|JM24|SN2	solute carrier family 38, member 5	protein-coding	0.030000	0.522388	
mm_74470.1	chr8	4258164	4258364	-	1	NA	NA	NA	1010	NM_183315	330695	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	0.020000	0.577114	
mm_90087.1	chr10	116914065	116914265	+	1	NA	NA	NA	-17286	NM_001033333	237558	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	0.040000	0.487562	
mm_160183.1	chr7	47452041	47452241	-	1	NA	NA	NA	-2	NM_001172588	668727	Mm.431311	NM_001172588	ENSMUSG00000093973	Mrgpra2a	-	MAS-related GPR, member A2A	protein-coding	0.005000	0.422886	-33(AACTTTAAATGC,-,0.00)
mm_29153.1	chr3	106001394	106001594	-	1	NA	NA	NA	3	NM_029604	100503311	Mm.386825	NM_029604	ENSMUSG00000010136	Pifo	1700027A23Rik	primary cilia formation	protein-coding	0.035000	0.522388	
mm_108406.1	chr12	81663244	81663444	+	1	NA	NA	NA	32095	NM_001033149	69480	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	0.035000	0.577114	
mm_58137.1	chr6	141777993	141778193	-	1	NA	NA	NA	78078	NM_030687	28250	Mm.255586	NM_030687	ENSMUSG00000030237	Slco1a4	AI785519|Oatp1a4|Oatp2|Slc21a5	solute carrier organic anion transporter family, member 1a4	protein-coding	0.005000	0.547264	
mm_74410.1	chr8	3624473	3624673	-	1	NA	NA	NA	476	NM_001129804	18545	Mm.440882	NM_008790	ENSMUSG00000004630	Pcp2	L7|Pcp-2	Purkinje cell protein 2 (L7)	protein-coding	0.025000	0.562189	
mm_119608.1	chr14	51104782	51104982	+	1	NA	NA	NA	8882	NM_201239	58809	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	0.015000	0.517413	
mm_67982.1	chr7	100662286	100662486	-	1	NA	NA	NA	8	NM_013746	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.025000	0.567164	
mm_141241.1	chr17	27467419	27467619	-	1	NA	NA	NA	36014	NM_001013385	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.005000	0.412935	-1(CCATATATACAC,+,0.00)
mm_2824.1	chr1	131139855	131140055	+	1	NA	NA	NA	-1721	NM_145508	226419	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.015000	0.492537	
mm_121107.1	chr14	101214329	101214529	+	1	NA	NA	NA	-14360	NM_029680	76627	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	0.000000	0.323383	
mm_1710.1	chr1	75236438	75236638	+	1	NA	NA	NA	115	NM_001159883	56812	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.080000	0.681592	
mm_21430.1	chr2	158360489	158360689	-	1	NA	NA	NA	920	NR_015463	68108	Mm.119198	NR_015463		Snhg17	9430008C03Rik	small nucleolar RNA host gene 17	ncRNA	0.010000	0.502488	
mm_24993.1	chr3	97158924	97159124	+	1	NA	NA	NA	247	NM_019800	66659	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	0.050000	0.587065	
mm_137850.1	chr17	31067254	31067454	+	1	NA	NA	NA	9660	NM_009593	11307	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding	0.015000	0.537313	
mm_59952.1	chr7	30426973	30427173	+	1	NA	NA	NA	3769	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.030000	0.597015	
mm_31021.1	chr4	40727003	40727203	+	1	NA	NA	NA	4173	NM_001164672	15502	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0.000000	0.393035	
mm_46137.1	chr5	92964679	92964879	-	1	NA	NA	NA	66786	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.030000	0.487562	
mm_147599.1	chr18	56733752	56733952	-	1	NA	NA	NA	26039	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.010000	0.477612	
mm_119230.1	chr14	33316955	33317155	+	1	NA	NA	NA	93969	NM_001310452	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.000000	0.398010	
mm_135756.1	chr16	56021162	56021362	-	1	NA	NA	NA	8455	NM_001024622	76302	Mm.310642	NM_001024622	ENSMUSG00000071533	Pcnp	1110018D06Rik|AI647035	PEST proteolytic signal containing nuclear protein	protein-coding	0.000000	0.298507	
mm_17823.1	chr2	33887292	33887492	-	1	NA	NA	NA	554	NM_175184	72543	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.165000	0.800995	
mm_17303.1	chr2	26351920	26352120	-	1	NA	NA	NA	90	NM_026828	52838	Mm.31239	NM_026828	ENSMUSG00000075467	Dnlz	1110034G11Rik|D2Bwg1335e|HEP1	DNL-type zinc finger	protein-coding	0.115000	0.641791	
mm_26069.1	chr3	136670031	136670231	+	1	NA	NA	NA	65	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.125000	0.761194	
mm_132894.1	chr16	48843469	48843669	+	1	NA	NA	NA	1017	NM_020509	57262	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0.005000	0.462687	
mm_120913.1	chr14	76312160	76312360	+	1	NA	NA	NA	-102701	NM_001310646	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.025000	0.422886	
mm_149112.1	chr19	8966909	8967109	+	1	NA	NA	NA	-32	NM_026007	67160	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	0.105000	0.641791	75(CCTTTTATGCCG,+,0.00)
mm_153223.1	chr19	34877752	34877952	-	1	NA	NA	NA	65	NM_023792	75735	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	0.015000	0.378109	
mm_162265.1	chr1	5083426	5083626	+	1	NA	NA	NA	440	NM_001310442	108664	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	0.085000	0.626866	
mm_112298.1	chr12	114646956	114647156	-	1	NA	NA	NA	-133362	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.010000	0.442786	
mm_30386.1	chr3	152247092	152247292	-	1	NA	NA	NA	19128	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.025000	0.417910	-46(GTTTTTAAAGAG,+,0.00)
mm_102514.1	chr11	60808759	60808959	-	1	NA	NA	NA	2406	NM_009171	20425	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	0.005000	0.507463	
mm_120786.1	chr14	74732238	74732438	+	1	NA	NA	NA	41	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.060000	0.641791	
mm_46593.1	chr5	107725901	107726101	-	1	NA	NA	NA	-196	NM_001267621	14581	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.045000	0.527363	
mm_29391.1	chr3	108904101	108904301	-	1	NA	NA	NA	7503	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.015000	0.467662	
mm_3964.1	chr1	164151626	164151826	+	1	NA	NA	NA	-109	NM_007976	14067	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	0.010000	0.562189	
mm_21867.1	chr2	165900797	165900997	-	1	NA	NA	NA	-16059	NM_001252587	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.020000	0.502488	
mm_171132.1	chr3	148151651	148151851	-	1	NA	NA	NA	802884	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.010000	0.388060	
mm_22767.1	chr3	20104936	20105136	+	1	NA	NA	NA	46745	NR_105047	20585	Mm.209650	NM_009210	ENSMUSG00000002428	Hltf	AF010600|BC057116|P113|Smarca3|Snf2l3	helicase-like transcription factor	protein-coding	0.010000	0.467662	
mm_3033.1	chr1	133914553	133914753	+	1	NA	NA	NA	-6654	NM_001160420	269120	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	0.025000	0.537313	
mm_134252.1	chr16	13672539	13672739	-	1	NA	NA	NA	781	NM_025653	67118	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	0.030000	0.517413	
mm_79401.1	chr9	54951015	54951215	+	1	NA	NA	NA	-161	NM_145229	246735	Mm.473773	NM_145229	ENSMUSG00000044820	AY074887	Mcpr1	cDNA sequence AY074887	protein-coding	0.105000	0.716418	
mm_148161.1	chr18	77713845	77714045	-	1	NA	NA	NA	65	NM_178670	212163	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	0.115000	0.701493	
mm_110569.1	chr12	56275650	56275850	-	1	NA	NA	NA	22507	NR_045048	100503961	Mm.136732	NR_045048		Gm19990	-	predicted gene, 19990	ncRNA	0.035000	0.517413	
mm_110952.1	chr12	76709912	76710112	-	1	NA	NA	NA	535	NM_013675	20741	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0.105000	0.721393	
mm_113985.1	chr13	52582628	52582828	+	1	NA	NA	NA	-709	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.015000	0.537313	
mm_23704.1	chr3	68784272	68784472	+	1	NA	NA	NA	-85214	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.000000	0.512438	
mm_38996.1	chr4	151154368	151154568	-	1	NA	NA	NA	64898	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	0.010000	0.502488	
mm_128748.1	chr15	64382929	64383129	-	1	NA	NA	NA	-110	NM_010026	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.060000	0.641791	
mm_129201.1	chr15	76511867	76512067	-	1	NA	NA	NA	-149	NM_010046	13350	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	0.125000	0.691542	
mm_133350.1	chr16	84371041	84371241	+	1	NA	NA	NA	-2	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0.010000	0.492537	-74(CTTTATATATGG,+,0.00)
mm_85125.1	chr9	95511775	95511975	-	1	NA	NA	NA	121	NM_026476	67958	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0.075000	0.597015	
mm_56011.1	chr6	86516165	86516365	-	1	NA	NA	NA	9900	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.000000	0.517413	
mm_44587.1	chr5	24908670	24908870	-	1	NA	NA	NA	-261	NM_001170555	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.135000	0.746269	-7(CTCCTTTTAAGG,-,0.00),-6(TCCTTTTAAGGG,-,0.00),-5(CCTTTTAAGGGA,+,0.00),-4(CTTTTAAGGGAG,+,0.00)
mm_160237.1	chr7	103881969	103882169	-	1	NA	NA	NA	172	NM_013618	18367	Mm.445781	NM_013618	ENSMUSG00000058200	Olfr66	5'[b]1|5'beta1|MOR1-3|ORL532	olfactory receptor 66	protein-coding	0.005000	0.477612	
mm_105444.1	chr11	104441668	104441868	-	1	NA	NA	NA	523	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.095000	0.716418	
mm_130040.1	chr15	88982672	88982872	-	1	NA	NA	NA	-222	NM_031260	83456	Mm.358791	NM_031260	ENSMUSG00000015365	Mov10l1	CHAMP|Csm	Moloney leukemia virus 10-like 1	protein-coding	0.055000	0.582090	
mm_23289.1	chr3	52069870	52070070	+	1	NA	NA	NA	35036	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.045000	0.572139	
mm_140789.1	chr17	18968944	18969144	-	1	NA	NA	NA	54722	NM_001104549	627367	Mm.384131	NM_001104549	ENSMUSG00000091491	Vmn2r97	EG627367|Vn2r97	vomeronasal 2, receptor 97	protein-coding	0.035000	0.522388	-47(CACTATAAAAGG,-,0.00)
mm_83722.1	chr9	50765841	50766041	-	1	NA	NA	NA	-8	NM_001311073	68721	Mm.171374	NM_023483	ENSMUSG00000037971	1110032A03Rik	4930500N06Rik|c11orf1	RIKEN cDNA 1110032A03 gene	protein-coding	0.005000	0.467662	
mm_74171.1	chr8	123428315	123428515	+	1	NA	NA	NA	-14541	NM_001253784	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.055000	0.552239	-81(GATTTTTAAAGG,-,0.00),-80(ATTTTTAAAGGG,+,0.00)
mm_164867.1	chr18	56505701	56505901	+	1	NA	NA	NA	-32338	NR_106160	102465790		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	0.015000	0.482587	
mm_149767.1	chr19	22994110	22994310	+	1	NA	NA	NA	-147016	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.005000	0.457711	
mm_57468.1	chr6	125231056	125231256	-	1	NA	NA	NA	-120	NR_015604	78668	Mm.10626	NR_015604	ENSMUSG00000030337	E130112N10Rik	5830448L21Rik|9530059J11Rik	RIKEN cDNA E130112N10 gene	ncRNA	0.005000	0.447761	
mm_169207.1	chr13	66441270	66441470	+	1	NA	NA	NA	-252	NM_001290196	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.005000	0.467662	
mm_115403.1	chr13	113989652	113989852	+	1	NA	NA	NA	161840	NR_045836	319803	Mm.386896	NM_177004		A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	0.010000	0.308458	
mm_86539.1	chr10	8751802	8752002	+	1	NA	NA	NA	134168	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.020000	0.487562	
mm_3174.1	chr1	135729124	135729324	+	1	NA	NA	NA	27	NM_007791	13007	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.095000	0.681592	
mm_18746.1	chr2	73312472	73312672	-	1	NA	NA	NA	20	NM_025854	66935	Mm.292140	NM_025854	ENSMUSG00000041777	Cir1	1700023B02Rik|2810021A19Rik|Cicr|Cir	corepressor interacting with RBPJ, 1	protein-coding	0.080000	0.577114	
mm_99041.1	chr11	98960685	98960885	+	1	NA	NA	NA	314	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.075000	0.696517	
mm_53521.1	chr6	136518698	136518898	+	1	NA	NA	NA	-53	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.100000	0.611940	
mm_65414.1	chr7	25245374	25245574	-	1	NA	NA	NA	5284	NM_010155	13875	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.025000	0.577114	
mm_157291.1	chrX	20862003	20862203	-	1	NA	NA	NA	1079	NR_049190	100885829		NR_049190	ENSMUSG00000093408	Mir5617	Gm25192|mir-5617|mmu-mir-5617	microRNA 5617	ncRNA	0.000000	0.487562	
mm_123600.1	chr14	67886833	67887033	-	1	NA	NA	NA	-27188	NR_105857	102465310		NR_105857	ENSMUSG00000098866	Mir6539	Gm27464|mir-6539|mmu-mir-6539	microRNA 6539	ncRNA	0.010000	0.502488	
mm_166034.1	chr4	128935809	128936009	-	1	NA	NA	NA	26546	NM_172875	242669	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.020000	0.522388	
mm_32576.1	chr4	110397598	110397798	+	1	NA	NA	NA	0	NM_001048189	78933	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	0.075000	0.661692	
mm_5057.1	chr1	194981046	194981246	+	1	NA	NA	NA	-4187	NR_033564	320400	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.005000	0.482587	
mm_138228.1	chr17	34355142	34355342	+	1	NA	NA	NA	420	NM_079835	547431	Mm.441007	NM_079835	ENSMUSG00000024340	Btnl2	BTL-II|BTLN2|Btl2|Gm315|NG9	butyrophilin-like 2	protein-coding	0.005000	0.472637	-28(TTTTTTAGAGAG,+,0.00)
mm_27214.1	chr3	35932964	35933164	-	1	NA	NA	NA	-98	NM_001205361	114893	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.145000	0.761194	
mm_152838.1	chr19	23448096	23448296	-	1	NA	NA	NA	126	NM_174857	71738	Mm.50841	NM_174857	ENSMUSG00000033207	Mamdc2	1200015L10Rik|AI591564|mamcan	MAM domain containing 2	protein-coding	0.060000	0.666667	
mm_156765.1	chrX	160529905	160530105	+	1	NA	NA	NA	27571	NM_001177878	110094	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	0.010000	0.313433	-24(CTGCATATAAAG,-,0.00)
mm_109206.1	chr12	108676125	108676325	+	1	NA	NA	NA	17605	NR_029771	723909		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.015000	0.547264	
mm_170283.1	chr18	27599244	27599444	+	1	NA	NA	NA	-960820	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.030000	0.547264	
mm_133766.1	chr16	94569681	94569881	+	1	NA	NA	NA	-425	NM_007890	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.115000	0.631841	-64(TTTTTTAAACCC,+,0.00)
mm_58214.1	chr6	144204044	144204244	-	1	NA	NA	NA	5424	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.030000	0.582090	
mm_123473.1	chr14	65974836	65975036	-	1	NA	NA	NA	6453	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.025000	0.562189	
mm_82976.1	chr9	35844128	35844328	-	1	NA	NA	NA	-78	NM_029863	77080	Mm.159846	NM_029863	ENSMUSG00000047980	9230110F15Rik	Pate-A|Pate5|mANLP3	RIKEN cDNA 9230110F15 gene	protein-coding	0.000000	0.457711	
mm_155496.1	chrX	73756990	73757190	+	1	NA	NA	NA	-13	NM_019587	140571	Mm.275600	NM_019587	ENSMUSG00000031385	Plxnb3	AI451018|Plxn6	plexin B3	protein-coding	0.015000	0.621891	
mm_102902.1	chr11	69523126	69523326	-	1	NA	NA	NA	25882	NM_001081330	327954	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0.010000	0.442786	
mm_121572.1	chr14	122876712	122876912	+	1	NA	NA	NA	36353	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.015000	0.462687	
mm_20482.1	chr2	129699712	129699912	-	1	NA	NA	NA	126	NM_018863	18610	Mm.6239	NM_018863	ENSMUSG00000027400	Pdyn	Dyn	prodynorphin	protein-coding	0.025000	0.552239	-66(ATCTATAAAAGG,-,0.00)
mm_54741.1	chr6	41030821	41031021	-	1	NA	NA	NA	4588	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.010000	0.477612	
mm_15564.1	chr2	158610659	158610859	+	1	NA	NA	NA	1	NM_009508	22348	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	0.060000	0.671642	
mm_56575.1	chr6	106747970	106748170	-	1	NA	NA	NA	967	NM_008370	16192	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	0.000000	0.427861	
mm_95565.1	chr11	52374207	52374407	+	1	NA	NA	NA	13445	NM_011694	22333	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.040000	0.457711	
mm_88058.1	chr10	67548131	67548331	+	1	NA	NA	NA	724	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.085000	0.686567	
mm_134246.1	chr16	13468668	13468868	-	1	NA	NA	NA	2412	NR_105784	102466153		NR_105784	ENSMUSG00000099214	Mir6365	Gm27683|mmu-mir-6365	microRNA 6365	ncRNA	0.015000	0.507463	
mm_52990.1	chr6	123265971	123266171	+	1	NA	NA	NA	3964	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.010000	0.442786	
mm_17410.1	chr2	27246795	27246995	-	1	NA	NA	NA	408	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.005000	0.616915	
mm_33776.1	chr4	134502143	134502343	+	1	NA	NA	NA	5202	NM_001285849	71904	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	0.010000	0.542289	
mm_96069.1	chr11	59810020	59810220	+	1	NA	NA	NA	40	NR_045686	100504104	Mm.391737	NR_045686	ENSMUSG00000087249	Gm16062	ENSMUSG00000072890|OTTMUSG00000029633	predicted gene 16062	ncRNA	0.050000	0.507463	
mm_123886.1	chr14	72709856	72710056	-	1	NA	NA	NA	47	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.135000	0.726368	
mm_52183.1	chr6	99521256	99521456	+	1	NA	NA	NA	-363	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.100000	0.721393	
mm_9812.1	chr1	182014394	182014594	-	1	NA	NA	NA	5486	NM_008680	13800	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	enabled homolog (Drosophila)	protein-coding	0.015000	0.432836	
mm_168552.1	chr1	164458395	164458595	+	1	NA	NA	NA	-140	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.095000	0.726368	
mm_132808.1	chr16	45158912	45159112	+	1	NA	NA	NA	183	NM_026402	67841	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	0.100000	0.721393	
mm_44135.1	chr5	150080507	150080707	+	1	NA	NA	NA	61932	NM_001289566	140498	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	0.015000	0.532338	-60(CCTTTTATATAG,+,0.00),-58(TTTTATATAGCA,+,0.00)
mm_68200.1	chr7	104380470	104380670	-	1	NA	NA	NA	-21924	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.000000	0.283582	
mm_87788.1	chr10	60297309	60297509	+	1	NA	NA	NA	12948	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.010000	0.517413	
mm_7611.1	chr1	126492826	126493026	-	1	NA	NA	NA	1	NM_172484	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.045000	0.651741	
mm_99976.1	chr11	114091336	114091536	+	1	NA	NA	NA	-25485	NM_172800	237979	Mm.130504	NM_172800	ENSMUSG00000041592	Sdk2	4632412F08Rik|5330435L01Rik|Sdk-2|mKIAA1514	sidekick cell adhesion molecule 2	protein-coding	0.010000	0.447761	
mm_54351.1	chr6	30958704	30958904	-	1	NA	NA	NA	186	NM_001135093	619665	Mm.204671	NM_001135093	ENSMUSG00000073209	Klf14	5330411L03Rik|AL022736|BTEB5	Kruppel-like factor 14	protein-coding	0.175000	0.810945	
mm_70065.1	chr7	142652267	142652467	-	1	NA	NA	NA	2629	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.005000	0.567164	-99(CTTTTTAGGGGC,+,0.00)
mm_6262.1	chr1	69131235	69131435	-	1	NA	NA	NA	-23276	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	0.015000	0.388060	87(CCTTTTAGAAAA,+,0.00)
mm_21455.1	chr2	160859516	160859716	-	1	NA	NA	NA	13374	NM_177263	320799	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	0.005000	0.457711	
mm_5042.1	chr1	194619724	194619924	+	1	NA	NA	NA	-5	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	0.115000	0.696517	
mm_92413.1	chr10	76725914	76726114	-	1	NA	NA	NA	30	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.015000	0.641791	
mm_107129.1	chr12	21111694	21111894	+	1	NA	NA	NA	38	NM_001135192	211914	Mm.358946	NM_001004364	ENSMUSG00000052632	Asap2	6530401G17Rik|Ddef2|Gm1523|Gm592|PAG3|PAP	ArfGAP with SH3 domain, ankyrin repeat and PH domain 2	protein-coding	0.145000	0.796020	
mm_121571.1	chr14	122876373	122876573	+	1	NA	NA	NA	36692	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.015000	0.442786	
mm_125539.1	chr15	58141268	58141468	+	1	NA	NA	NA	2	NM_001326599	76773	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	0.080000	0.666667	
mm_126966.1	chr15	92701332	92701532	+	1	NA	NA	NA	104323	NM_001164594	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding	0.005000	0.502488	-40(GACCATAAAAAG,-,0.00),-38(CCATAAAAAGGG,+,0.00)
mm_157958.1	chrX	88115512	88115712	-	1	NA	NA	NA	11	NM_001160403	331461	Mm.121680	NM_001160403	ENSMUSG00000052372	Il1rapl1	6330532G10Rik|C030039N24|IL1R8|IL1RAPL|MRX34|OPHN4|TIGIRR-2	interleukin 1 receptor accessory protein-like 1	protein-coding	0.020000	0.472637	
mm_157274.1	chrX	20291705	20291905	-	1	NA	NA	NA	-41	NM_177353	236727	Mm.132983	NM_177353	ENSMUSG00000037341	Slc9a7	A530087D17Rik|NHE7	solute carrier family 9 (sodium/hydrogen exchanger), member 7	protein-coding	0.120000	0.751244	
mm_42978.1	chr5	123176016	123176216	+	1	NA	NA	NA	6570	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.050000	0.557214	
mm_154917.1	chrX	21714999	21715199	+	1	NA	NA	NA	199	NM_020049	56774	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	0.015000	0.567164	-90(CTCCATAAATGG,-,0.00),-88(CCATAAATGGTC,+,0.00)
mm_168424.1	chr11	33395294	33395494	-	1	NA	NA	NA	118352	NR_110973	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.015000	0.427861	-27(CCCTATTAAAAA,-,0.00)
mm_86621.1	chr10	13966088	13966288	+	1	NA	NA	NA	-191	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.100000	0.716418	
mm_79086.1	chr9	46242469	46242669	+	1	NA	NA	NA	1725	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.030000	0.537313	
mm_123678.1	chr14	69487503	69487703	-	1	NA	NA	NA	24946	NM_173420	239167	Mm.259889	NM_173420	ENSMUSG00000047977	Synb	D930020E02Rik|syncytin-B	syncytin b	protein-coding	0.000000	0.402985	-33(GCTTATAGAGGC,+,0.00)
mm_7738.1	chr1	130887315	130887515	-	1	NA	NA	NA	-4	NM_053095	93672	Mm.196691	NM_053095	ENSMUSG00000026420	Il24	FISP|Mda-7|Mda7|St16	interleukin 24	protein-coding	0.000000	0.512438	-33(CCTTATATACAG,+,0.00)
mm_142571.1	chr17	46678516	46678716	-	1	NA	NA	NA	-1837	NM_001277310	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.010000	0.616915	
mm_25302.1	chr3	105974876	105975076	+	1	NA	NA	NA	1174	NM_007696	12659	Mm.431947	NM_007696	ENSMUSG00000074340	Ovgp1	120kDa|AU016433|AU019448|Chit5|MOGP|OGP|muc9	oviductal glycoprotein 1	protein-coding	0.015000	0.462687	
mm_105384.1	chr11	103356255	103356455	-	1	NA	NA	NA	7337	NM_183288	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.010000	0.601990	
mm_111312.1	chr12	85817827	85818027	-	1	NA	NA	NA	6618	NM_021446	58520	Mm.143795	NM_021446	ENSMUSG00000021252	0610007P14Rik	1190004E09Rik|AU019315|C77855|ORF11	RIKEN cDNA 0610007P14 gene	protein-coding	0.025000	0.517413	
mm_7557.1	chr1	124708090	124708290	-	1	NA	NA	NA	-662631	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.482587	
mm_128547.1	chr15	55090359	55090559	-	1	NA	NA	NA	19	NM_183089	72107	Mm.486550	NM_183089	ENSMUSG00000022422	Dscc1	2010006I05Rik|2600005O03Rik|Dcc1	DNA replication and sister chromatid cohesion 1	protein-coding	0.130000	0.666667	
mm_48487.1	chr5	142529963	142530163	-	1	NA	NA	NA	13	NM_019943	56522	Mm.441372	NM_019943	ENSMUSG00000074817	Papolb	PAP|Paplob|Papola-ps|Papt|Plap-ps|Tpap	poly (A) polymerase beta (testis specific)	protein-coding	0.145000	0.736318	
mm_63685.1	chr7	130569804	130570004	+	1	NA	NA	NA	-7580	NM_001004468	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.005000	0.422886	
mm_1925.1	chr1	86053772	86053972	+	1	NA	NA	NA	8009	NM_001144992	72792	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	0.005000	0.522388	
mm_99062.1	chr11	99155138	99155338	+	1	NA	NA	NA	-161	NM_007719	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.020000	0.552239	
mm_72462.1	chr8	83259226	83259426	+	1	NA	NA	NA	-31022	NM_009463	22227	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	0.035000	0.447761	
mm_32812.1	chr4	117148813	117149013	+	1	NA	NA	NA	5661	NR_028524	100217424		NR_028524	ENSMUSG00000065680	Snord38a	MBII-329	small nucleolar RNA, C/D box 38A	snoRNA	0.085000	0.626866	
mm_403.1	chr1	34184010	34184210	+	1	NA	NA	NA	23780	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.010000	0.412935	
mm_81190.1	chr9	107550684	107550884	+	1	NA	NA	NA	-771	NM_001243748	56289	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0.045000	0.621891	
mm_51824.1	chr6	89254294	89254494	+	1	NA	NA	NA	31331	NR_131021	75131	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	-	RIKEN cDNA 4930512J16 gene	ncRNA	0.020000	0.477612	
mm_108335.1	chr12	80115793	80115993	+	1	NA	NA	NA	-2880	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.150000	0.706468	
mm_160038.1	chr6	134471071	134471271	-	1	NA	NA	NA	74842	NM_025778	66813	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.030000	0.577114	
mm_152050.1	chr19	6235572	6235772	-	1	NA	NA	NA	168	NM_198168	225849	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0.080000	0.716418	
mm_16603.1	chr2	5063881	5064081	-	1	NA	NA	NA	-43	NM_181848	71648	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0.120000	0.736318	
mm_134569.1	chr16	20362150	20362350	-	1	NA	NA	NA	-36846	NM_183158	224044	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.040000	0.532338	
mm_68793.1	chr7	123500008	123500208	-	1	NA	NA	NA	341	NM_001081329	210162	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	0.020000	0.497512	
mm_37247.1	chr4	118179949	118180149	-	1	NA	NA	NA	-6	NM_001161823	230674	Mm.234234	NM_172382	ENSMUSG00000033326	Kdm4a	D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677	lysine (K)-specific demethylase 4A	protein-coding	0.055000	0.537313	47(GACTTTAAAGGA,-,0.00)
mm_86021.1	chr9	112235760	112235960	-	1	NA	NA	NA	-1019	NM_001177619	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.020000	0.572139	
mm_76171.1	chr8	82392018	82392218	-	1	NA	NA	NA	10468	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.000000	0.412935	
mm_10551.1	chr2	16675204	16675404	+	1	NA	NA	NA	319000	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.005000	0.323383	
mm_78263.1	chr9	21936928	21937128	+	1	NA	NA	NA	18	NM_001290299	235044	Mm.277521	NM_144935	ENSMUSG00000040563	Plppr2	Lppr2|PRG-4	phospholipid phosphatase related 2	protein-coding	0.085000	0.621891	
mm_67558.1	chr7	81706990	81707190	-	1	NA	NA	NA	-165	NM_001164086	26557	Mm.228	NM_011983	ENSMUSG00000025813	Homer2	9330120H11Rik|AW539445|CPD|Vesl-2	homer scaffolding protein 2	protein-coding	0.150000	0.786070	
mm_20918.1	chr2	150668128	150668328	-	1	NA	NA	NA	12	NM_080575	68738	Mm.7044	NM_080575	ENSMUSG00000027452	Acss1	1110032O15Rik|AI788978|Acas2|Acas2l|AceCS2	acyl-CoA synthetase short-chain family member 1	protein-coding	0.110000	0.726368	
mm_753.1	chr1	43730694	43730894	+	1	NA	NA	NA	192	NM_024283	78896	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	0.030000	0.621891	
mm_73882.1	chr8	119344655	119344855	+	1	NA	NA	NA	217	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.095000	0.756219	
mm_4480.1	chr1	173436009	173436209	+	1	NA	NA	NA	15505	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.000000	0.427861	
mm_84621.1	chr9	70543067	70543267	-	1	NA	NA	NA	297	NM_025690	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.160000	0.791045	
mm_61930.1	chr7	90165959	90166159	+	1	NA	NA	NA	35827	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.005000	0.358209	
mm_55879.1	chr6	83523130	83523330	-	1	NA	NA	NA	13021	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.005000	0.527363	
mm_131961.1	chr16	24567780	24567980	+	1	NA	NA	NA	38566	NR_038091	624582	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.025000	0.383085	6(TCTTATATGCGC,+,0.00)
mm_28482.1	chr3	92457098	92457298	-	1	NA	NA	NA	1522	NM_001204427	20766	Mm.57092	NM_011478	ENSMUSG00000045539	Sprr3	SPR3	small proline-rich protein 3	protein-coding	0.010000	0.497512	
mm_93828.1	chr10	121555557	121555757	-	1	NA	NA	NA	31137	NM_019786	56480	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.005000	0.338308	
mm_11536.1	chr2	32629738	32629938	+	1	NA	NA	NA	338	NM_021515	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.025000	0.572139	
mm_58007.1	chr6	136497798	136497998	-	1	NA	NA	NA	-20953	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.010000	0.537313	-34(AGCTATATAAGC,-,0.00)
mm_137395.1	chr17	25823532	25823732	+	1	NA	NA	NA	5	NM_173741	268933	Mm.95512	NM_173741	ENSMUSG00000025737	Wdr24	BC037651	WD repeat domain 24	protein-coding	0.070000	0.537313	
mm_118513.1	chr14	14346498	14346698	+	1	NA	NA	NA	103	NM_008369	16188	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0.065000	0.676617	
mm_4330.1	chr1	171854181	171854381	+	1	NA	NA	NA	14584	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.303483	
mm_170119.1	chr17	39846664	39846864	+	1	NA	NA	NA	3767	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.110000	0.631841	
mm_150219.1	chr19	33961052	33961252	+	1	NA	NA	NA	-96	NM_026334	67717	Mm.329816	NM_026334	ENSMUSG00000024768	Lipf	2310051B21Rik|AV082900	lipase, gastric	protein-coding	0.000000	0.348259	61(TGGTATATAAGG,-,0.00)
mm_79984.1	chr9	66946737	66946937	+	1	NA	NA	NA	761	NM_026467	67941	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	0.025000	0.477612	
mm_31690.1	chr4	62360627	62360827	+	1	NA	NA	NA	26	NM_175090	20529	Mm.248637	NM_175090	ENSMUSG00000066150	Slc31a1	4930445G01Rik|AI787263|AU016967|Ctr1	solute carrier family 31, member 1	protein-coding	0.080000	0.646766	
mm_84817.1	chr9	77544666	77544866	-	1	NA	NA	NA	86	NM_001146048	214345	Mm.28534	NM_172528	ENSMUSG00000032352	Lrrc1	A430093J20Rik|AU016091|D030059I21|mKIAA4018	leucine rich repeat containing 1	protein-coding	0.155000	0.771144	
mm_99758.1	chr11	106752367	106752567	+	1	NA	NA	NA	1241	NM_001033435	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.010000	0.527363	
mm_168636.1	chr1	183205831	183206031	-	1	NA	NA	NA	15598	NM_001278218	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0.020000	0.368159	
mm_101772.1	chr11	44470351	44470551	-	1	NA	NA	NA	97	NM_024475	79560	Mm.338784	NM_024475	ENSMUSG00000041231	Ublcp1	4930527B16Rik|8430435I17Rik|BC002236	ubiquitin-like domain containing CTD phosphatase 1	protein-coding	0.130000	0.691542	
mm_66588.1	chr7	45395596	45395796	-	1	NA	NA	NA	46	NM_009224	20637	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	0.125000	0.666667	
mm_4235.1	chr1	171370297	171370497	+	1	NA	NA	NA	224	NM_001122680	71740	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	0.060000	0.676617	
mm_99251.1	chr11	101119833	101120033	+	1	NA	NA	NA	-90	NM_028933	67998	Mm.33881	NM_026501	ENSMUSG00000017802	Fam134c	1300010M03Rik|4933404C01Rik|AI551748	family with sequence similarity 134, member C	protein-coding	0.165000	0.686567	
mm_118978.1	chr14	28057292	28057492	+	1	NA	NA	NA	434985	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	0.015000	0.457711	
mm_29596.1	chr3	119783136	119783336	-	1	NA	NA	NA	152	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.120000	0.691542	
mm_79955.1	chr9	66126667	66126867	+	1	NA	NA	NA	156	NM_026635	68250	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	0.060000	0.537313	
mm_93627.1	chr10	117278085	117278285	-	1	NA	NA	NA	4087	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.035000	0.497512	
mm_171353.1	chr4	110321417	110321617	-	1	NA	NA	NA	30394	NM_001163397	15572	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein-coding	0.040000	0.606965	
mm_94132.1	chr10	128696087	128696287	-	1	NA	NA	NA	81	NM_177411	19344	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	0.065000	0.681592	
mm_158652.1	chrX	155623443	155623643	-	1	NA	NA	NA	-216	NM_001093750	211612	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	0.120000	0.800995	
mm_122108.1	chr14	30923456	30923656	-	1	NA	NA	NA	31	NM_008407	16426	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	0.005000	0.582090	-33(GCATATATAAAG,-,0.00)
mm_106176.1	chr11	116680609	116680809	-	1	NA	NA	NA	6112	NR_028570	100216538		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0.035000	0.651741	
mm_15311.1	chr2	155561017	155561217	+	1	NA	NA	NA	-4187	NR_040613	74945	Mm.401956	NR_040613	ENSMUSG00000086529	Acss2os	4930471I20Rik	acyl-CoA synthetase short-chain family member 2, opposite strand	ncRNA	0.020000	0.537313	
mm_27340.1	chr3	50414618	50414818	-	1	NA	NA	NA	28895	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.298507	
mm_146672.1	chr18	12644268	12644468	-	1	NA	NA	NA	835	NM_028341	72747	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.045000	0.636816	
mm_127673.1	chr15	102750324	102750524	+	1	NA	NA	NA	-3515	NR_104334	102216269		NR_104334		Gm38436	Cistr|Cistr-act	predicted gene, 38436	ncRNA	0.015000	0.547264	
mm_10174.1	chr2	4559822	4560022	+	1	NA	NA	NA	168	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.020000	0.527363	
mm_73785.1	chr8	117115742	117115942	+	1	NA	NA	NA	19977	NM_001163028	63857	Mm.174133	NM_021486	ENSMUSG00000031845	Bco1	Bcdo|Bcdo1|Bcmo1|CMO1|Cmoi|beta-CD|betaCMOOX	beta-carotene oxygenase 1	protein-coding	0.030000	0.572139	
mm_67734.1	chr7	90131007	90131207	-	1	NA	NA	NA	875	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.040000	0.482587	
mm_105587.1	chr11	106715172	106715372	-	1	NA	NA	NA	9	NM_001305158	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.020000	0.532338	
mm_109069.1	chr12	104345267	104345467	+	1	NA	NA	NA	6881	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.010000	0.482587	22(CTCTTTATGGCC,+,0.00)
mm_137504.1	chr17	27017936	27018136	+	1	NA	NA	NA	1	NM_001251881	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.065000	0.582090	
mm_947.1	chr1	57127223	57127423	+	1	NA	NA	NA	87673	NR_037990	407809	Mm.134505	NR_037990	ENSMUSG00000101429	BC055402	-	cDNA sequence BC055402	ncRNA	0.000000	0.462687	
mm_93412.1	chr10	108444923	108445123	-	1	NA	NA	NA	112834	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.005000	0.462687	
mm_79522.1	chr9	57589362	57589562	+	1	NA	NA	NA	10	NM_027895	71742	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	0.095000	0.726368	
mm_71787.1	chr8	66697353	66697553	+	1	NA	NA	NA	31	NM_010934	18166	Mm.5112	NM_010934	ENSMUSG00000036437	Npy1r	Npyr|Y1-R	neuropeptide Y receptor Y1	protein-coding	0.025000	0.467662	-65(CGGCTTTAAGGG,-,0.00),-64(GGCTTTAAGGGG,-,0.00),-63(GCTTTAAGGGGG,+,0.00),59(TTCTTTAAAAGG,-,0.00),60(TCTTTAAAAGGT,+,0.00),85(GTGTTTTTAAGG,-,0.00),87(GTTTTTAAGGGA,+,0.00)
mm_103587.1	chr11	78190036	78190236	-	1	NA	NA	NA	1388	NM_033475	19376	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	0.010000	0.472637	
mm_4242.1	chr1	171389034	171389234	+	1	NA	NA	NA	174	NM_001005508	226652	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	0.010000	0.631841	
mm_147283.1	chr18	39487679	39487879	-	1	NA	NA	NA	-534	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.000000	0.383085	
mm_96161.1	chr11	61487803	61488003	+	1	NA	NA	NA	2459	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.040000	0.547264	
mm_24971.1	chr3	96750834	96751034	+	1	NA	NA	NA	23323	NM_026406	67845	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.000000	0.502488	
mm_43863.1	chr5	143471151	143471351	+	1	NA	NA	NA	6758	NM_144915	231871	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.010000	0.447761	-27(TACCATATAAAG,-,0.00),-25(CCATATAAAGGC,+,0.00),-25(CCATATAAAGGC,-,0.00)
mm_169618.1	chr15	38243514	38243714	-	1	NA	NA	NA	24411	NM_008757	18285	Mm.252830	NM_008757	ENSMUSG00000061923	Odf1	-	outer dense fiber of sperm tails 1	protein-coding	0.040000	0.492537	
mm_44986.1	chr5	37448349	37448549	-	1	NA	NA	NA	109971	NM_145920	68525	Mm.25506	NM_145920	ENSMUSG00000050248	Evc2	1110017L09Rik|Lbn|limbin	Ellis van Creveld syndrome 2	protein-coding	0.005000	0.442786	
mm_155668.1	chrX	89651632	89651832	+	1	NA	NA	NA	-100536	NM_001085511	245509	Mm.297700	NM_001085511	ENSMUSG00000079513	4932429P05Rik	-	RIKEN cDNA 4932429P05 gene	protein-coding	0.005000	0.398010	
mm_85783.1	chr9	109059138	109059338	-	1	NA	NA	NA	13	NM_001012236	22040	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	0.025000	0.611940	
mm_22318.1	chr2	180456000	180456200	-	1	NA	NA	NA	-4878	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.080000	0.621891	
mm_80092.1	chr9	70235084	70235284	+	1	NA	NA	NA	27834	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.015000	0.517413	
mm_151503.1	chr19	58729931	58730131	+	1	NA	NA	NA	1144	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.005000	0.532338	
mm_2317.1	chr1	92048615	92048815	+	1	NA	NA	NA	131626	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.005000	0.462687	
mm_16486.1	chr2	180967154	180967354	+	1	NA	NA	NA	29	NM_001177707	228998	Mm.33765	NM_145760	ENSMUSG00000027575	Arfgap1	AI115377|Arf1gap	ADP-ribosylation factor GTPase activating protein 1	protein-coding	0.095000	0.691542	
mm_170417.1	chr18	68692148	68692348	+	1	NA	NA	NA	-47152	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0.065000	0.517413	-40(AACTTTAAATGG,-,0.00)
mm_90189.1	chr10	120171918	120172118	+	1	NA	NA	NA	29519	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.005000	0.542289	-31(GCTTTAATACCC,+,0.00)
mm_119300.1	chr14	34700632	34700832	+	1	NA	NA	NA	26804	NM_001301330	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.000000	0.268657	
mm_152986.1	chr19	29611515	29611715	-	1	NA	NA	NA	36805	NM_001081213	226090	Mm.267131	NM_146098	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	0.015000	0.422886	
mm_157402.1	chrX	38430933	38431133	-	1	NA	NA	NA	25427	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.015000	0.422886	
mm_137441.1	chr17	26509605	26509805	+	1	NA	NA	NA	-1233	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.035000	0.452736	81(ATTTTTAAAGGG,+,0.00)
mm_12572.1	chr2	73023983	73024183	+	1	NA	NA	NA	-43637	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.010000	0.467662	
mm_21897.1	chr2	166155727	166155927	-	1	NA	NA	NA	-144	NM_028072	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.040000	0.577114	
mm_6065.1	chr1	60781611	60781811	-	1	NA	NA	NA	35323	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.015000	0.388060	
mm_112334.1	chr12	115952922	115953122	-	1	NA	NA	NA	-94702	NM_001004066	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0.000000	0.432836	
mm_16953.1	chr2	17390766	17390966	-	1	NA	NA	NA	-172648	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	0.010000	0.383085	
mm_52997.1	chr6	123268004	123268204	+	1	NA	NA	NA	5997	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.015000	0.477612	
mm_42417.1	chr5	115279634	115279834	+	1	NA	NA	NA	32	NM_026504	52064	Mm.290142	NM_026504	ENSMUSG00000041733	Coq5	1810014G04Rik|D5Ertd33e	coenzyme Q5 methyltransferase	protein-coding	0.135000	0.726368	
mm_60891.1	chr7	46397082	46397282	+	1	NA	NA	NA	714	NM_001112739	16502	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.090000	0.636816	57(TCCCCTAAAAAG,-,0.00),59(CCCTAAAAAGCT,+,0.00)
mm_4974.1	chr1	191325852	191326052	+	1	NA	NA	NA	-13	NM_025864	66950	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0.110000	0.651741	
mm_144578.1	chr18	31922171	31922371	+	1	NA	NA	NA	-9236	NM_144862	225341	Mm.24551	NM_144862	ENSMUSG00000024395	Lims2	PINCH2	LIM and senescent cell antigen like domains 2	protein-coding	0.035000	0.601990	
mm_119553.1	chr14	48655188	48655388	+	1	NA	NA	NA	7584	NM_144841	18424	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	0.055000	0.616915	
mm_30771.1	chr4	17853250	17853450	+	1	NA	NA	NA	-108	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.085000	0.661692	
mm_148413.1	chr19	3935157	3935357	+	1	NA	NA	NA	71	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.045000	0.631841	
mm_171517.1	chr4	146514825	146515025	+	1	NA	NA	NA	5	NM_001243139	100041433	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247|OTTMUSG00000011075	zinc finger protein 981	protein-coding	0.015000	0.527363	
mm_96817.1	chr11	69994385	69994585	+	1	NA	NA	NA	-1281	NM_001291125	78246	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.020000	0.482587	
mm_47647.1	chr5	125389654	125389854	-	1	NA	NA	NA	263	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.110000	0.681592	-34(GACTATATAAAG,-,0.00)
mm_82945.1	chr9	35544603	35544803	-	1	NA	NA	NA	13767	NM_013932	30959	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	0.005000	0.432836	-34(GGCTATATAAAG,-,0.00)
mm_168312.1	chr11	109011863	109012063	-	1	NA	NA	NA	91614	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.090000	0.631841	
mm_8066.1	chr1	135441387	135441587	-	1	NA	NA	NA	-10996	NM_153774	226432	Mm.271642	NM_153774	ENSMUSG00000041879	Ipo9	0710008K06Rik|AI845704|C78347|Imp9|Ranbp9|mKIAA1192	importin 9	protein-coding	0.020000	0.492537	
mm_151641.1	chr19	4036719	4036919	-	1	NA	NA	NA	1093	NM_013541	14870	Mm.299292	NM_013541	ENSMUSG00000060803	Gstp1	GstpiB	glutathione S-transferase, pi 1	protein-coding	0.030000	0.562189	
mm_49254.1	chr6	17405802	17406002	+	1	NA	NA	NA	-58055	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.005000	0.457711	
mm_157913.1	chrX	78552660	78552860	-	1	NA	NA	NA	31045	NM_001164275	546336	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	0.000000	0.432836	
mm_145011.1	chr18	38601512	38601712	+	1	NA	NA	NA	-344	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.045000	0.542289	
mm_12960.1	chr2	90479133	90479333	+	1	NA	NA	NA	-59	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.025000	0.452736	
mm_168459.1	chr1	143683548	143683748	+	1	NA	NA	NA	19245	NM_145991	214498	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	0.005000	0.353234	-92(TGGTATTAAAGA,-,0.00),82(CACTATTAATGG,-,0.00),84(CTATTAATGGGC,+,0.00)
mm_38845.1	chr4	149214077	149214277	-	1	NA	NA	NA	-47470	NM_001081274	110208	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.045000	0.482587	
mm_87592.1	chr10	57486473	57486673	+	1	NA	NA	NA	188	NM_008297	15500	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	0.080000	0.606965	
mm_12281.1	chr2	69008308	69008508	+	1	NA	NA	NA	-127392	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.000000	0.388060	
mm_166663.1	chr6	88802630	88802830	+	1	NA	NA	NA	39205	NM_030251	80283	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.010000	0.477612	
mm_137540.1	chr17	27556612	27556812	+	1	NA	NA	NA	59	NM_001166477	111241	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1-rs1	ENSMUSG00000041059|Hmgi-rs1	high mobility group AT-hook I, related sequence 1	protein-coding	0.080000	0.567164	-93(CTCTTTTTAAGC,-,0.00),-91(CTTTTTAAGCTC,+,0.00)
mm_100662.1	chr11	3266300	3266500	-	1	NA	NA	NA	-14	NM_007879	13494	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	0.125000	0.696517	
mm_104782.1	chr11	98550873	98551073	-	1	NA	NA	NA	-124	NM_199419	69376	Mm.55996	NM_027061	ENSMUSG00000017195	Zpbp2	1700017D11Rik|2610022C02Rik|ZPBPL	zona pellucida binding protein 2	protein-coding	0.070000	0.597015	
mm_85257.1	chr9	99358435	99358635	-	1	NA	NA	NA	-5	NM_177775	272636	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0.065000	0.661692	
mm_83578.1	chr9	48340529	48340729	-	1	NA	NA	NA	269	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.030000	0.482587	-63(CTTTATATAGAA,+,0.00)
mm_154983.1	chrX	38179788	38179988	+	1	NA	NA	NA	-9905	NM_020256	56805	Mm.391248	NM_020256	ENSMUSG00000048047	Zbtb33	AW260253|E130014G12Rik|Kaiso|Znf-kaiso	zinc finger and BTB domain containing 33	protein-coding	0.045000	0.497512	-23(CTCTTTAAGAGC,-,0.00),-22(TCTTTAAGAGCT,+,0.00)
mm_85559.1	chr9	106891270	106891470	-	1	NA	NA	NA	568	NM_029103	74840	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	0.010000	0.452736	
mm_128759.1	chr15	65912189	65912389	-	1	NA	NA	NA	-2	NM_010953	18256	Mm.41776	NM_010953	ENSMUSG00000015001	Oc90	Ocn-95|PLA2L|Pla2ll|oc95	otoconin 90	protein-coding	0.015000	0.462687	
mm_15936.1	chr2	165655177	165655377	+	1	NA	NA	NA	-21	NM_010165	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	0.020000	0.517413	
mm_99529.1	chr11	103171002	103171202	+	1	NA	NA	NA	-36	NM_001077698	57778	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.135000	0.766169	
mm_78644.1	chr9	40269385	40269585	+	1	NA	NA	NA	269	NM_178227	235281	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.070000	0.626866	
mm_138748.1	chr17	37044810	37045010	+	1	NA	NA	NA	-1056	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.015000	0.442786	
mm_59733.1	chr7	28810802	28811002	+	1	NA	NA	NA	12	NM_177301	15388	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.110000	0.751244	
mm_39062.1	chr4	154025813	154026013	-	1	NA	NA	NA	131	NM_001163722	68859	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	0.075000	0.736318	
mm_154726.1	chrX	9436582	9436782	+	1	NA	NA	NA	32642	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.015000	0.477612	
mm_118949.1	chr14	27360986	27361186	+	1	NA	NA	NA	-303	NM_001289688	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.020000	0.522388	
mm_14902.1	chr2	150181690	150181890	+	1	NA	NA	NA	35	NM_001145863	100271882		NM_001145863	ENSMUSG00000079009	Gm14139	OTTMUSG00000015769	predicted gene 14139	protein-coding	0.025000	0.532338	
mm_66519.1	chr7	45120061	45120261	-	1	NA	NA	NA	-1596	NR_029560	387168		NR_029560	ENSMUSG00000065495	Mir150	Mirn150|mir-150|mmu-mir-150	microRNA 150	ncRNA	0.000000	0.507463	
mm_80261.1	chr9	72856789	72856989	+	1	NA	NA	NA	49615	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.070000	0.592040	
mm_67813.1	chr7	98162084	98162284	-	1	NA	NA	NA	158	NM_001301250	12337	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0.010000	0.557214	
mm_87611.1	chr10	57785412	57785612	+	1	NA	NA	NA	589	NM_021272	12140	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.020000	0.462687	
mm_13194.1	chr2	93200200	93200400	+	1	NA	NA	NA	12716	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.020000	0.552239	
mm_61396.1	chr7	73375386	73375586	+	1	NA	NA	NA	-34	NM_177740	244058	Mm.333943	NM_177740	ENSMUSG00000070509	Rgma	BC059072|C230063O06	repulsive guidance molecule family member A	protein-coding	0.145000	0.815920	
mm_132479.1	chr16	36784808	36785008	+	1	NA	NA	NA	54	NM_001145899	57738	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.010000	0.517413	
mm_22830.1	chr3	27316812	27317012	+	1	NA	NA	NA	-165	NM_009425	22035	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.025000	0.552239	
mm_150394.1	chr19	36409745	36409945	+	1	NA	NA	NA	30778	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.170000	0.810945	
mm_37436.1	chr4	122955422	122955622	-	1	NA	NA	NA	5666	NM_029662	76574	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.050000	0.626866	
mm_88588.1	chr10	79710795	79710995	+	1	NA	NA	NA	-5739	NM_008226	15166	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	0.030000	0.606965	
mm_166039.1	chr4	129640873	129641073	-	1	NA	NA	NA	92	NM_001199695	109658	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	0.085000	0.631841	
mm_149566.1	chr19	12798530	12798730	+	1	NA	NA	NA	21	NM_134152	107321	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	0.020000	0.512438	
mm_114716.1	chr13	83609335	83609535	+	1	NA	NA	NA	35828	NM_001347569	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.010000	0.378109	-68(CTCTTTTAATGG,-,0.00),-66(CTTTTAATGGTG,+,0.00),-28(ATCTTTAAAAAG,-,0.00)
mm_30086.1	chr3	138143274	138143474	-	1	NA	NA	NA	14	NM_001163457	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	0.095000	0.601990	
mm_161864.1	chr18	33463856	33464056	-	1	NA	NA	NA	73	NM_001109988	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.160000	0.796020	
mm_97192.1	chr11	75576800	75577000	+	1	NA	NA	NA	-11179	NM_008850	18738	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.010000	0.552239	
mm_47861.1	chr5	134611767	134611967	-	1	NA	NA	NA	3158	NM_022964	56743	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0.025000	0.557214	
mm_92449.1	chr10	77742581	77742781	-	1	NA	NA	NA	16195	NM_001205033	100502953	Mm.486157	NM_001205033	ENSMUSG00000096421	Gm10100	ENSMUSG00000061452	predicted gene 10100	protein-coding	0.010000	0.562189	-34(AGGTATAAAAGC,-,0.00)
mm_148759.1	chr19	6061178	6061378	+	1	NA	NA	NA	71	NM_013859	29805	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	0.120000	0.691542	
mm_6653.1	chr1	79762848	79763048	-	1	NA	NA	NA	-1179	NM_027057	69368	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	0.020000	0.482587	
mm_6725.1	chr1	82586760	82586960	-	1	NA	NA	NA	-11	NM_007735	12829	Mm.40253	NM_007735	ENSMUSG00000067158	Col4a4	E130010M05Rik|[a]4(IV)	collagen, type IV, alpha 4	protein-coding	0.060000	0.651741	
mm_2061.1	chr1	87573924	87574124	+	1	NA	NA	NA	-3	NM_001160164	23956	Mm.143717	NM_015750	ENSMUSG00000079434	Neu2	MBS|MSS|MTS	neuraminidase 2	protein-coding	0.020000	0.587065	
mm_109826.1	chr12	3872865	3873065	-	1	NA	NA	NA	-10721	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.010000	0.577114	
mm_72553.1	chr8	84066291	84066491	+	1	NA	NA	NA	-445	NM_009055	19724	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	0.075000	0.577114	
mm_109651.1	chr12	112860995	112861195	+	1	NA	NA	NA	-179	NM_019925	56696	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.035000	0.562189	
mm_142838.1	chr17	51793813	51794013	-	1	NA	NA	NA	18141	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.005000	0.487562	
mm_76402.1	chr8	84845858	84846058	-	1	NA	NA	NA	973	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.045000	0.502488	
mm_45317.1	chr5	65436343	65436543	-	1	NA	NA	NA	-601	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.050000	0.552239	
mm_5754.1	chr1	46853756	46853956	-	1	NA	NA	NA	-347	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.100000	0.601990	
mm_16500.1	chr2	181201078	181201278	+	1	NA	NA	NA	1611	NM_009184	20459	Mm.4497	NM_009184	ENSMUSG00000038751	Ptk6	BRK|Sik|Tksk|tks	PTK6 protein tyrosine kinase 6	protein-coding	0.010000	0.547264	
mm_32666.1	chr4	115452475	115452675	+	1	NA	NA	NA	-29	NM_001100185	435802	Mm.466611	NM_001100185	ENSMUSG00000084346	Cyp4a30b	Cyp4a30b-ps|OTTMUSG00000008626	cytochrome P450, family 4, subfamily a, polypeptide 30b	protein-coding	0.015000	0.447761	
mm_53815.1	chr6	147042648	147042848	+	1	NA	NA	NA	-22	NM_145573	232536	Mm.46656	NM_145573	ENSMUSG00000040112	Mrps35	MDSO23|MRP-S28|MRPS28	mitochondrial ribosomal protein S35	protein-coding	0.085000	0.651741	
mm_128413.1	chr15	44748364	44748564	-	1	NA	NA	NA	208	NM_001285840	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding	0.155000	0.786070	
mm_66669.1	chr7	45725672	45725872	-	1	NA	NA	NA	44	NM_027055	69363	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	0.025000	0.592040	
mm_105416.1	chr11	103652564	103652764	-	1	NA	NA	NA	3155	NM_001033212	104582	Mm.44618	NM_001033212	ENSMUSG00000046215	Rprml	AW049332	reprimo-like	protein-coding	0.015000	0.537313	
mm_114818.1	chr13	91676688	91676888	+	1	NA	NA	NA	-64733	NM_028790	74156	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0.000000	0.248756	
mm_76077.1	chr8	79248451	79248651	-	1	NA	NA	NA	32	NM_026315	67687	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.025000	0.537313	59(GGCTTGAAAAGC,-,0.00)
mm_3482.1	chr1	150105495	150105695	+	1	NA	NA	NA	5564	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.457711	
mm_154230.1	chr19	60224802	60225002	-	1	NA	NA	NA	1795	NM_029648	76539	Mm.290183	NM_029648	ENSMUSG00000057858	Fam204a	2310065H12Rik|2610015K05Rik|D19Ertd737e	family with sequence similarity 204, member A	protein-coding	0.000000	0.273632	
mm_125856.1	chr15	75070689	75070889	+	1	NA	NA	NA	-21952	NM_001252056	17067	Mm.1583	NM_010741	ENSMUSG00000079018	Ly6c1	AA682074|AA959465|Ly-6C|Ly-6C1|Ly6c	lymphocyte antigen 6 complex, locus C1	protein-coding	0.000000	0.487562	
mm_128405.1	chr15	44691593	44691793	-	1	NA	NA	NA	14795	NM_001285842	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding	0.005000	0.363184	
mm_33422.1	chr4	130006645	130006845	+	1	NA	NA	NA	14691	NM_001290715	230775	Mm.262241	NM_173071	ENSMUSG00000028782	Adgrb2	Bai2	adhesion G protein-coupled receptor B2	protein-coding	0.085000	0.696517	
mm_10520.1	chr2	16361317	16361517	+	1	NA	NA	NA	5113	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.005000	0.338308	
mm_132388.1	chr16	34994811	34995011	+	1	NA	NA	NA	-27510	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.020000	0.497512	
mm_163141.1	chr11	80183813	80184013	+	1	NA	NA	NA	41	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.055000	0.597015	
mm_156564.1	chrX	151858106	151858306	+	1	NA	NA	NA	-1356	NR_130340	100526542		NR_130340	ENSMUSG00000093219	Mir3113	mmu-mir-3113	microRNA 3113	ncRNA	0.005000	0.268657	
mm_143545.1	chr17	74017006	74017206	-	1	NA	NA	NA	30810	NM_053188	94224	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.005000	0.398010	
mm_63460.1	chr7	127565379	127565579	+	1	NA	NA	NA	4256	NM_001304267	105180375	Mm.428042	NM_001304267	ENSMUSG00000106715	Tmem265	-	transmembrane protein 265	protein-coding	0.005000	0.273632	
mm_98082.1	chr11	86545083	86545283	+	1	NA	NA	NA	192	NM_001199046	56427	Mm.383207	NM_019756	ENSMUSG00000020513	Tubd1	4930550G19Rik|Tubd	tubulin, delta 1	protein-coding	0.045000	0.467662	
mm_87951.1	chr10	63060639	63060839	+	1	NA	NA	NA	-878	NM_026701	68371	Mm.261389	NM_026701	ENSMUSG00000020072	Pbld1	0610038K03Rik|Mawbp|Pbld	phenazine biosynthesis-like protein domain containing 1	protein-coding	0.035000	0.452736	
mm_129189.1	chr15	76350552	76350752	-	1	NA	NA	NA	458	NM_025340	106025	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	0.105000	0.681592	
mm_11164.1	chr2	28557515	28557715	+	1	NA	NA	NA	5788	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.015000	0.552239	
mm_67510.1	chr7	80786757	80786957	-	1	NA	NA	NA	16474	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.010000	0.512438	
mm_127645.1	chr15	102484100	102484300	+	1	NA	NA	NA	13568	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.025000	0.467662	
mm_53099.1	chr6	125049862	125050062	+	1	NA	NA	NA	35	NM_016845	54137	Mm.347910	NM_016845	ENSMUSG00000072770	Acrbp	OY-TES-1|sp32	proacrosin binding protein	protein-coding	0.065000	0.606965	
mm_64770.1	chr7	4995301	4995501	-	1	NA	NA	NA	700	NM_026741	68490	Mm.76400	NM_026741	ENSMUSG00000051550	Zfp579	1110003A17Rik|Znf579	zinc finger protein 579	protein-coding	0.010000	0.587065	
mm_107257.1	chr12	28675150	28675350	+	1	NA	NA	NA	43	NM_134052	104923	Mm.291504	NM_134052	ENSMUSG00000020629	Adi1	AL024210|Fe-ARD|MTCBP-1|Ni-ARD	acireductone dioxygenase 1	protein-coding	0.100000	0.701493	
mm_84795.1	chr9	77223252	77223452	-	1	NA	NA	NA	124518	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.000000	0.393035	
mm_172696.1	chr8	62162498	62162698	-	1	NA	NA	NA	-39405	NM_011922	26359	Mm.42179	NM_011922	ENSMUSG00000031635	Anxa10	-	annexin A10	protein-coding	0.060000	0.651741	
mm_152265.1	chr19	8798368	8798568	-	1	NA	NA	NA	89	NM_026329	67710	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	0.055000	0.601990	
mm_42747.1	chr5	120753833	120754033	+	1	NA	NA	NA	-4085	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.005000	0.333333	
mm_33331.1	chr4	129136768	129136968	+	1	NA	NA	NA	-131	NM_027402	384061	Mm.44075	NM_027402	ENSMUSG00000001334	Fndc5	1500001L03Rik|AI836596|C87088|PeP|Pxp	fibronectin type III domain containing 5	protein-coding	0.150000	0.820896	
mm_95965.1	chr11	58893607	58893807	+	1	NA	NA	NA	10518	NM_011758	22698	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	0.000000	0.388060	
mm_3179.1	chr1	135751090	135751290	+	1	NA	NA	NA	-14895	NM_013750	27280	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	0.025000	0.587065	
mm_123542.1	chr14	66824356	66824556	-	1	NA	NA	NA	44144	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.025000	0.522388	
mm_43834.1	chr5	142972324	142972524	+	1	NA	NA	NA	12069	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.015000	0.611940	
mm_112250.1	chr12	113625930	113626130	-	1	NA	NA	NA	82122	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.025000	0.522388	
mm_131756.1	chr16	22857822	22858022	+	1	NA	NA	NA	77	NM_001190804	67838	Mm.37516	NM_026400	ENSMUSG00000004460	Dnajb11	1810031F23Rik|ABBP-2|AL024055|Dj9|ERdj3|ERj3p	DnaJ heat shock protein family (Hsp40) member B11	protein-coding	0.115000	0.746269	
mm_71478.1	chr8	46617284	46617484	+	1	NA	NA	NA	93	NM_009810	12367	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0.070000	0.656716	
mm_69017.1	chr7	126707748	126707948	-	1	NA	NA	NA	-3032	NM_009898	12721	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.025000	0.527363	
mm_2246.1	chr1	91056558	91056758	+	1	NA	NA	NA	3214	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.020000	0.532338	
mm_54481.1	chr6	35112532	35112732	-	1	NA	NA	NA	21105	NM_001164412	53621	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0.000000	0.417910	
mm_35148.1	chr4	11965575	11965775	-	1	NA	NA	NA	38	NM_001098231	381511	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	0.065000	0.592040	
mm_116492.1	chr13	44869516	44869716	-	1	NA	NA	NA	132480	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.070000	0.527363	17(CCCCAGAAAAGG,-,0.00)
mm_55206.1	chr6	52213232	52213432	-	1	NA	NA	NA	-265	NM_010452	15400	Mm.71533	NM_010452	ENSMUSG00000079560	Hoxa3	Hox-1.5|Mo-10	homeobox A3	protein-coding	0.075000	0.572139	
mm_5511.1	chr1	37496039	37496239	-	1	NA	NA	NA	-7534	NR_024017	77633	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.015000	0.452736	
mm_83853.1	chr9	54560082	54560282	-	1	NA	NA	NA	-103	NM_019686	56506	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	0.115000	0.805970	
mm_66928.1	chr7	61529867	61530067	-	1	NA	NA	NA	85360	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.000000	0.273632	
mm_57477.1	chr6	125236746	125236946	-	1	NA	NA	NA	181	NM_001033126	21940	Mm.367714	NM_001033126	ENSMUSG00000030336	Cd27	S152|Tnfrsf7|Tp55	CD27 antigen	protein-coding	0.010000	0.582090	
mm_19380.1	chr2	91195068	91195268	-	1	NA	NA	NA	-52	NM_001177730	22259	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0.040000	0.661692	
mm_156634.1	chrX	155911904	155912104	+	1	NA	NA	NA	-288677	NM_001093750	211612	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	0.000000	0.432836	
mm_138948.1	chr17	44125247	44125447	+	1	NA	NA	NA	-19539	NM_199016	224794	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90|mKIAA0879	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	0.015000	0.407960	
mm_43330.1	chr5	135009657	135009857	+	1	NA	NA	NA	301	NR_033794	68758	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.080000	0.651741	
mm_71042.1	chr8	33667718	33667918	+	1	NA	NA	NA	14580	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.020000	0.447761	-27(ACCCTTAAAAGC,-,0.00),-26(CCCTTAAAAGCT,+,0.00),-25(CCTTAAAAGCTG,+,0.00)
mm_58648.1	chr7	6277347	6277547	+	1	NA	NA	NA	-9133	NM_001024928	384763	Mm.276279	NM_001024928	ENSMUSG00000054893	Zfp667	A830025F02Rik|Mip1|ZNF667	zinc finger protein 667	protein-coding	0.015000	0.507463	
mm_143458.1	chr17	70990598	70990798	-	1	NA	NA	NA	-182	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.100000	0.686567	
mm_49534.1	chr6	30175161	30175361	+	1	NA	NA	NA	-1136	NR_126541	101447999		NR_126540		Mirc35hg	-	microRNA cluster 35, host gene	ncRNA	0.040000	0.577114	
mm_82267.1	chr9	7184379	7184579	-	1	NA	NA	NA	-87	NM_029775	76863	Mm.27293	NM_029775	ENSMUSG00000032002	Dcun1d5	3110001A18Rik|4833420K19Rik|AW060460|D430047L21Rik	DCN1, defective in cullin neddylation 1, domain containing 5 (S. cerevisiae)	protein-coding	0.065000	0.582090	
mm_165165.1	chr2	25500044	25500244	-	1	NA	NA	NA	362	NM_027062	69379	Mm.24596	NM_027062	ENSMUSG00000015083	C8g	-	complement component 8, gamma polypeptide	protein-coding	0.010000	0.532338	
mm_166691.1	chr6	113544004	113544204	+	1	NA	NA	NA	12422	NM_001347350	211651	Mm.160061	NM_001033244	ENSMUSG00000034023	Fancd2	2410150O07Rik|AU015151|BB137857|FA-D2|FA4|FACD|FAD|FANCD	Fanconi anemia, complementation group D2	protein-coding	0.030000	0.472637	
mm_26066.1	chr3	135840234	135840434	+	1	NA	NA	NA	-65	NR_040540	71038	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	0.050000	0.482587	
mm_12898.1	chr2	84799357	84799557	+	1	NA	NA	NA	629	NM_019949	56791	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.025000	0.452736	
mm_61406.1	chr7	73418354	73418554	+	1	NA	NA	NA	-42680	NR_040324	319783	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.025000	0.601990	
mm_19513.1	chr2	93984692	93984892	-	1	NA	NA	NA	4758	NR_045827	70852	Mm.437014	NR_045827	ENSMUSG00000027196	Alkbh3os1	4921507L20Rik	alkB homolog 3, opposite strand 1	ncRNA	0.010000	0.472637	
mm_45648.1	chr5	77015835	77016035	-	1	NA	NA	NA	-88	NM_027970	71868	Mm.151092	NM_027970	ENSMUSG00000029248	Thegl	1700023E05Rik	theg spermatid protein like	protein-coding	0.095000	0.661692	
mm_77463.1	chr8	122420999	122421199	-	1	NA	NA	NA	-986	NM_145834	234836	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.010000	0.432836	
mm_52186.1	chr6	99522352	99522552	+	1	NA	NA	NA	-1459	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.035000	0.402985	
mm_94441.1	chr11	6301443	6301643	+	1	NA	NA	NA	8985	NM_001252288	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.005000	0.358209	
mm_150041.1	chr19	29377842	29378042	+	1	NA	NA	NA	10504	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.000000	0.318408	
mm_83582.1	chr9	48340683	48340883	-	1	NA	NA	NA	115	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.025000	0.467662	-34(CTCTCTAAAAGC,-,0.00)
mm_145205.1	chr18	50016930	50017130	+	1	NA	NA	NA	-36252	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.010000	0.492537	
mm_32579.1	chr4	110409464	110409664	+	1	NA	NA	NA	11866	NM_030231	78933	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	0.005000	0.343284	
mm_141401.1	chr17	29264031	29264231	-	1	NA	NA	NA	-160	NM_026845	68816	Mm.328928	NM_026845	ENSMUSG00000024007	Ppil1	1110060O10Rik|AI327391|Cypl1	peptidylprolyl isomerase (cyclophilin)-like 1	protein-coding	0.055000	0.532338	
mm_99020.1	chr11	98918576	98918776	+	1	NA	NA	NA	10525	NM_011799	23834	Mm.20912	NM_011799	ENSMUSG00000017499	Cdc6	CDC18L	cell division cycle 6	protein-coding	0.040000	0.487562	
mm_3032.1	chr1	133880845	133881045	+	1	NA	NA	NA	26228	NM_054076	269120	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	0.015000	0.472637	
mm_56646.1	chr6	113377429	113377629	-	1	NA	NA	NA	-9	NM_133932	101206	Mm.266811	NM_133932	ENSMUSG00000048930	Tada3	1110004B19Rik|ADA3|AI987856|Tada3l	transcriptional adaptor 3	protein-coding	0.070000	0.701493	
mm_21070.1	chr2	152826077	152826277	-	1	NA	NA	NA	4540	NM_001289716	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.000000	0.417910	
mm_85958.1	chr9	112124667	112124867	-	1	NA	NA	NA	-6056	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.015000	0.597015	
mm_141127.1	chr17	26201108	26201308	-	1	NA	NA	NA	142	NM_008113	14570	Mm.1383	NM_008113	ENSMUSG00000073433	Arhgdig	Gdi5|RIP2|Rho-GDI-3|Rho-GDI2	Rho GDP dissociation inhibitor (GDI) gamma	protein-coding	0.185000	0.820896	
mm_71217.1	chr8	40898848	40899048	+	1	NA	NA	NA	-27285	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.030000	0.537313	-95(ATCTATTAAAGA,-,0.00)
mm_146345.1	chr18	82537511	82537711	+	1	NA	NA	NA	-16852	NM_001025256	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.015000	0.502488	
mm_71677.1	chr8	60869917	60870117	+	1	NA	NA	NA	-20434	NM_028299	72612	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.010000	0.467662	-32(GAGTTTAAAGGC,-,0.00)
mm_2453.1	chr1	101231754	101231954	+	1	NA	NA	NA	76086	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0.005000	0.373134	
mm_30182.1	chr3	144257249	144257449	-	1	NA	NA	NA	-52094	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.015000	0.492537	
mm_106464.1	chr11	120070449	120070649	-	1	NA	NA	NA	16278	NM_009734	12009	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	0.045000	0.601990	
mm_27628.1	chr3	60501730	60501930	-	1	NA	NA	NA	651	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.020000	0.492537	3(CTCCATATAAGG,-,0.00),5(CCATATAAGGCA,+,0.00)
mm_26503.1	chr3	145758628	145758828	+	1	NA	NA	NA	36	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.130000	0.746269	
mm_138927.1	chr17	43801703	43801903	+	1	NA	NA	NA	-48	NM_207649	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.080000	0.706468	
mm_84904.1	chr9	79961925	79962125	-	1	NA	NA	NA	15857	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.035000	0.601990	
mm_83460.1	chr9	45262882	45263082	-	1	NA	NA	NA	3725	NR_106054	102466803		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.005000	0.482587	
mm_51189.1	chr6	70968703	70968903	+	1	NA	NA	NA	12197	NM_001101464	232077	Mm.297656	NM_001101464	ENSMUSG00000055874	Foxi3	-	forkhead box I3	protein-coding	0.020000	0.517413	-18(GCCTATAAATAG,-,0.00)
mm_105704.1	chr11	108270451	108270651	-	1	NA	NA	NA	73337	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.010000	0.427861	
mm_155407.1	chrX	73356340	73356540	+	1	NA	NA	NA	13819	NM_001160229	27081	Mm.26595	NM_031494	ENSMUSG00000031365	Zfp275	5430431L06Rik|AI593314|DXBay20|DXHXS52|DXPas8	zinc finger protein 275	protein-coding	0.005000	0.472637	
mm_151378.1	chr19	56034996	56035196	+	1	NA	NA	NA	139775	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.000000	0.437811	
mm_110423.1	chr12	46818407	46818607	-	1	NA	NA	NA	268	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.145000	0.810945	
mm_113735.1	chr13	44216109	44216309	+	1	NA	NA	NA	278	NR_045088	100503592	Mm.184925	NR_045088		A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	0.005000	0.482587	
mm_157445.1	chrX	41822329	41822529	-	1	NA	NA	NA	89472	NM_001033422	331401	Mm.259498	NM_001033422	ENSMUSG00000037475	Thoc2	6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2	THO complex 2	protein-coding	0.000000	0.373134	
mm_140897.1	chr17	24073385	24073585	-	1	NA	NA	NA	0	NM_027008	69259	Mm.28171	NM_027008	ENSMUSG00000016946	Kctd5	2610030N08Rik|mKIAA0176	potassium channel tetramerisation domain containing 5	protein-coding	0.095000	0.641791	-91(GCTTTTCGAGCC,+,0.00),-2(CTGTATTAAAGA,-,0.00)
mm_38957.1	chr4	150678661	150678861	-	1	NA	NA	NA	-26587	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.035000	0.517413	
mm_40854.1	chr5	73502550	73502750	+	1	NA	NA	NA	11624	NM_178896	100737	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.025000	0.582090	
mm_83760.1	chr9	51963315	51963515	-	1	NA	NA	NA	187	NM_007996	14148	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	0.125000	0.726368	
mm_20174.1	chr2	122396116	122396316	-	1	NA	NA	NA	-27298	NM_001013829	435684	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0.010000	0.577114	
mm_110622.1	chr12	57175990	57176190	-	1	NA	NA	NA	-15447	NM_001167976	217593	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0.005000	0.283582	
mm_87411.1	chr10	45875207	45875407	+	1	NA	NA	NA	67603	NR_040624	320363	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	0.055000	0.477612	
mm_148812.1	chr19	6294336	6294536	+	1	NA	NA	NA	-12021	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.050000	0.572139	
mm_67821.1	chr7	98199413	98199613	-	1	NA	NA	NA	-38	NM_001081167	272411	Mm.98333	NM_001081167	ENSMUSG00000074004	B3gnt6	BC039789|Core-3|Core3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 (core 3 synthase)	protein-coding	0.015000	0.527363	
mm_96836.1	chr11	70017981	70018181	+	1	NA	NA	NA	-524	NM_001109752	13385	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs, large homolog 4 (Drosophila)	protein-coding	0.005000	0.522388	
mm_135196.1	chr16	36455222	36455422	-	1	NA	NA	NA	70	NM_025288	20863	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	0.005000	0.422886	
mm_101997.1	chr11	51262703	51262903	-	1	NA	NA	NA	148	NM_177567	193286	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0.035000	0.592040	
mm_59522.1	chr7	27607681	27607881	+	1	NA	NA	NA	445	NM_001331109	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.020000	0.651741	
mm_114517.1	chr13	73260428	73260628	+	1	NA	NA	NA	31	NM_018885	50916	Mm.103784	NM_018885	ENSMUSG00000021604	Irx4	-	Iroquois related homeobox 4 (Drosophila)	protein-coding	0.150000	0.736318	
mm_23770.1	chr3	75557446	75557646	+	1	NA	NA	NA	13	NM_009250	20713	Mm.41560	NM_009250	ENSMUSG00000027834	Serpini1	AI837402|Ns|PI-12|PI12|Spi17	serine (or cysteine) peptidase inhibitor, clade I, member 1	protein-coding	0.040000	0.597015	
mm_41250.1	chr5	88793770	88793970	+	1	NA	NA	NA	28857	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.000000	0.472637	
mm_68908.1	chr7	126457061	126457261	-	1	NA	NA	NA	5912	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.015000	0.542289	
mm_135235.1	chr16	36957250	36957450	-	1	NA	NA	NA	21786	NM_001037321	207215	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0.025000	0.582090	
mm_102432.1	chr11	59506119	59506319	-	1	NA	NA	NA	421	NM_001291014	268417	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0.095000	0.696517	
mm_58297.1	chr6	145865359	145865559	-	1	NA	NA	NA	-39	NM_024469	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.115000	0.681592	
mm_100759.1	chr11	4497429	4497629	-	1	NA	NA	NA	-56447	NM_029458	75828	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0.015000	0.422886	
mm_126882.1	chr15	89453824	89454024	+	1	NA	NA	NA	13	NM_021921	60597	Mm.173337	NM_021921	ENSMUSG00000022619	Mapk8ip2	3230402N03Rik|AI847694|AW049958|IB2|Jip2|R75148	mitogen-activated protein kinase 8 interacting protein 2	protein-coding	0.070000	0.641791	
mm_163829.1	chr14	19417421	19417621	-	1	NA	NA	NA	185066	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.015000	0.333333	
mm_37467.1	chr4	123512048	123512248	-	1	NA	NA	NA	-100237	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.015000	0.472637	
mm_26454.1	chr3	142700986	142701186	+	1	NA	NA	NA	38	NM_001293560	229905	Mm.289643	NM_173763	ENSMUSG00000040213	Kyat3	Ccbl2|KATIII|Kat3	kynurenine aminotransferase 3	protein-coding	0.070000	0.626866	
mm_44153.1	chr5	150445625	150445825	+	1	NA	NA	NA	56494	NR_024513	194292	Mm.300184	NR_024513		Gm5	Gm1812	predicted gene 5	ncRNA	0.015000	0.597015	
mm_111842.1	chr12	107938554	107938754	-	1	NA	NA	NA	64760	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.000000	0.422886	
mm_32122.1	chr4	99031327	99031527	+	1	NA	NA	NA	473	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.005000	0.462687	
mm_37718.1	chr4	129550699	129550899	-	1	NA	NA	NA	7012	NR_106199	102465997		NR_106199	ENSMUSG00000099070	Mir8119	Gm27567|mmu-mir-8119	microRNA 8119	ncRNA	0.005000	0.353234	
mm_23964.1	chr3	84952366	84952566	+	1	NA	NA	NA	255	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.055000	0.567164	-3(CCTTTTCTGGCG,+,0.00)
mm_147319.1	chr18	42216836	42217036	-	1	NA	NA	NA	-20227	NM_027072	69401	Mm.34841	NM_027072	ENSMUSG00000059455	Plac8l1	1700009N18Rik|1700015M15Rik	PLAC8-like 1	protein-coding	0.010000	0.487562	
mm_123761.1	chr14	70205891	70206091	-	1	NA	NA	NA	31	NM_001271407	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.065000	0.636816	
mm_47891.1	chr5	134713934	134714134	-	1	NA	NA	NA	-25444	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.020000	0.532338	
mm_125692.1	chr15	66868703	66868903	+	1	NA	NA	NA	-22590	NM_018865	22402	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0.000000	0.482587	
mm_66516.1	chr7	45103674	45103874	-	1	NA	NA	NA	48	NM_010189	14132	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0.005000	0.552239	
mm_52164.1	chr6	98275396	98275596	+	1	NA	NA	NA	67258	NM_001128092	330390	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0.025000	0.477612	
mm_172666.1	chr8	43180235	43180435	-	1	NA	NA	NA	-2787	NM_001160412	622117	Mm.390031	NM_001160412	ENSMUSG00000091490	Triml2	EG622117|Tu4	tripartite motif family-like 2	protein-coding	0.005000	0.437811	
mm_115267.1	chr13	110943416	110943616	+	1	NA	NA	NA	-39670	NR_131194	102636142	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0.005000	0.427861	-4(CACTTGAAAAGC,-,0.00)
mm_137618.1	chr17	28280143	28280343	+	1	NA	NA	NA	-6621	NR_039557	100628577		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.025000	0.601990	
mm_21726.1	chr2	164673988	164674188	-	1	NA	NA	NA	-1	NM_001161806	629761	Mm.389336	NM_001161806	ENSMUSG00000078940	Wfdc11	-	WAP four-disulfide core domain 11	protein-coding	0.015000	0.497512	
mm_115174.1	chr13	108211172	108211372	+	1	NA	NA	NA	-3132	NM_029001	74559	Mm.286127	NM_029001	ENSMUSG00000021696	Elovl7	9130013K24Rik|AI840082	ELOVL family member 7, elongation of long chain fatty acids (yeast)	protein-coding	0.010000	0.517413	
mm_69244.1	chr7	127807157	127807357	-	1	NA	NA	NA	6648	NM_001040684	101502	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	0.015000	0.611940	
mm_17756.1	chr2	32775267	32775467	-	1	NA	NA	NA	-28	NM_001290566	338348	Mm.475130	NM_177384	ENSMUSG00000039021	Ttc16	1200002K10Rik	tetratricopeptide repeat domain 16	protein-coding	0.035000	0.597015	
mm_68492.1	chr7	111075540	111075740	-	1	NA	NA	NA	7390	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.020000	0.467662	
mm_103367.1	chr11	75169072	75169272	-	1	NA	NA	NA	-1020	NM_001098203	15248	Mm.57250	NM_010430	ENSMUSG00000043099	Hic1	AA408311|HIC-1	hypermethylated in cancer 1	protein-coding	0.140000	0.746269	
mm_22413.1	chr2	181459302	181459502	-	1	NA	NA	NA	24	NM_028125	72147	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0.195000	0.825871	
mm_93911.1	chr10	127060042	127060242	-	1	NA	NA	NA	42	NM_001033262	216438	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	0.170000	0.796020	
mm_57516.1	chr6	125483418	125483618	-	1	NA	NA	NA	11237	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.025000	0.557214	
mm_44793.1	chr5	32458711	32458911	-	1	NA	NA	NA	-159	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.085000	0.626866	
mm_76752.1	chr8	95434708	95434908	-	1	NA	NA	NA	61	NM_008187	14894	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.130000	0.711443	
mm_171421.1	chr4	13378013	13378213	+	1	NA	NA	NA	-365189	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.035000	0.562189	
mm_101872.1	chr11	48891934	48892134	-	1	NA	NA	NA	10118	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.005000	0.393035	
mm_125554.1	chr15	58823723	58823923	+	1	NA	NA	NA	-396	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.065000	0.616915	
mm_13964.1	chr2	121422367	121422567	+	1	NA	NA	NA	8565	NM_007952	14827	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	0.010000	0.373134	
mm_6082.1	chr1	62832115	62832315	-	1	NA	NA	NA	-37483	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.015000	0.517413	
mm_128921.1	chr15	73765637	73765837	-	1	NA	NA	NA	17711	NM_008975	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.020000	0.532338	
mm_35767.1	chr4	46194227	46194427	-	1	NA	NA	NA	1984	NM_011728	22590	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	0.005000	0.378109	-40(CCTCTTAAAGTG,+,0.00)
mm_29091.1	chr3	104638437	104638637	-	1	NA	NA	NA	-127	NM_009196	20501	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.165000	0.796020	
mm_82430.1	chr9	15007798	15007998	-	1	NA	NA	NA	37580	NM_019482	55991	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.025000	0.422886	
mm_71105.1	chr8	35587703	35587903	+	1	NA	NA	NA	5	NM_001081279	52065	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	0.155000	0.756219	
mm_145046.1	chr18	39774752	39774952	+	1	NA	NA	NA	1355	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.035000	0.507463	
mm_72592.1	chr8	84356681	84356881	+	1	NA	NA	NA	-58583	NM_001252060	12286	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.040000	0.646766	
mm_127795.1	chr15	3583301	3583501	-	1	NA	NA	NA	-49	NM_010284	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.090000	0.711443	
mm_67852.1	chr7	98694128	98694328	-	1	NA	NA	NA	8700	NR_144495	100040769	Mm.126401	NR_144495		Gm15506	OTTMUSG00000023003	predicted gene 15506	ncRNA	0.015000	0.497512	
mm_55435.1	chr6	66875658	66875858	-	1	NA	NA	NA	-20639	NM_001177557	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.055000	0.477612	
mm_163899.1	chr14	29309896	29310096	+	1	NA	NA	NA	291788	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding	0.015000	0.437811	-2(CTTTTTATACTC,+,0.00)
mm_147828.1	chr18	62177761	62177961	-	1	NA	NA	NA	2120	NM_007420	11555	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.010000	0.308458	
mm_61801.1	chr7	84312636	84312836	+	1	NA	NA	NA	97302	NM_007488	11864	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding	0.005000	0.507463	
mm_86791.1	chr10	20205209	20205409	+	1	NA	NA	NA	-3130	NM_001101561	621697	Mm.440587	NM_001101561		Rpl32l	EG621697|Gm6251	ribosomal protein L32-like	protein-coding	0.030000	0.517413	
mm_160332.1	chr8	10272582	10272782	+	1	NA	NA	NA	118771	NM_001319151	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.035000	0.577114	
mm_65544.1	chr7	27129673	27129873	-	1	NA	NA	NA	9818	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.045000	0.557214	
mm_43904.1	chr5	144255164	144255364	+	1	NA	NA	NA	39	NM_018772	55950	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.175000	0.825871	
mm_93544.1	chr10	115587654	115587854	-	1	NA	NA	NA	26	NM_010195	14160	Mm.42103	NM_010195	ENSMUSG00000020140	Lgr5	FEX|Gpr49	leucine rich repeat containing G protein coupled receptor 5	protein-coding	0.090000	0.641791	-39(CGCTTTAAAAAA,-,0.00)
mm_88882.1	chr10	81128887	81129087	+	1	NA	NA	NA	-7284	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.025000	0.492537	
mm_59990.1	chr7	30554778	30554978	+	1	NA	NA	NA	1576	NM_001012401	243912	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	0.025000	0.567164	
mm_35947.1	chr4	53113327	53113527	-	1	NA	NA	NA	46468	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.020000	0.452736	
mm_56991.1	chr6	120916672	120916872	-	1	NA	NA	NA	48	NM_007544	12122	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	0.105000	0.706468	
mm_20455.1	chr2	129365036	129365236	-	1	NA	NA	NA	-4766	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.010000	0.462687	
mm_69760.1	chr7	141009596	141009796	-	1	NA	NA	NA	1048	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.030000	0.457711	
mm_146612.1	chr18	10029982	10030182	-	1	NA	NA	NA	67	NM_021522	59025	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0.100000	0.696517	-98(CCCTTTATGCCC,+,0.00)
mm_8725.1	chr1	160047641	160047841	-	1	NA	NA	NA	3361	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.010000	0.422886	
mm_42443.1	chr5	115430227	115430427	+	1	NA	NA	NA	642	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.090000	0.761194	
mm_157190.1	chrX	12058530	12058730	-	1	NA	NA	NA	21923	NM_175045	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.020000	0.562189	
mm_8879.1	chr1	162866281	162866481	-	1	NA	NA	NA	229	NM_010231	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.025000	0.467662	
mm_124696.1	chr15	6439101	6439301	+	1	NA	NA	NA	-6132	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.010000	0.402985	17(CTATTAATAGGG,+,0.00)
mm_17481.1	chr2	28561234	28561434	-	1	NA	NA	NA	2069	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.020000	0.601990	
mm_58531.1	chr7	4274059	4274259	+	1	NA	NA	NA	16	NM_011093	18729	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	0.005000	0.577114	
mm_36666.1	chr4	95052098	95052298	-	1	NA	NA	NA	24	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.050000	0.572139	
mm_1286.1	chr1	64121794	64121994	+	1	NA	NA	NA	-505	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.110000	0.686567	-70(GGCTATATAAAG,-,0.00),-68(CTATATAAAGGG,+,0.00),-68(CTATATAAAGGG,-,0.00)
mm_104928.1	chr11	100016110	100016310	-	1	NA	NA	NA	2	NM_027983	71888	Mm.440318	NM_027983	ENSMUSG00000035592	Krt33a	2310015J09Rik	keratin 33A	protein-coding	0.015000	0.522388	-34(GGATATAAAAGC,-,0.00)
mm_104869.1	chr11	99389260	99389460	-	1	NA	NA	NA	4	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.020000	0.537313	-35(CAGTATATAAAG,-,0.00),-33(GTATATAAAGGC,+,0.00),-33(GTATATAAAGGC,-,0.00)
mm_119653.1	chr14	52016791	52016991	+	1	NA	NA	NA	26	NM_001033805	619301	Mm.475177	NM_001033805	ENSMUSG00000072571	Tmem253	G630016D24Rik	transmembrane protein 253	protein-coding	0.010000	0.547264	
mm_150814.1	chr19	44397052	44397252	+	1	NA	NA	NA	10557	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.005000	0.447761	
mm_132959.1	chr16	50046338	50046538	+	1	NA	NA	NA	26414	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.015000	0.502488	
mm_74536.1	chr8	9758462	9758662	-	1	NA	NA	NA	12461	NM_173446	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding	0.005000	0.323383	-85(TCATATAAAGAC,+,0.00)
mm_94289.1	chr11	4031702	4031902	+	1	NA	NA	NA	20	NM_146013	103655	Mm.337476	NM_146013	ENSMUSG00000019368	Sec14l4	AI256582|AW536553|SPF|TAP	SEC14-like lipid binding 4	protein-coding	0.025000	0.636816	
mm_109443.1	chr12	110850188	110850388	+	1	NA	NA	NA	9	NM_028365	72805	Mm.443524	NM_028365	ENSMUSG00000021271	Zfp839	2810455K09Rik	zinc finger protein 839	protein-coding	0.115000	0.691542	
mm_121917.1	chr14	22780434	22780634	-	1	NA	NA	NA	-237736	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.005000	0.328358	
mm_69767.1	chr7	141010619	141010819	-	1	NA	NA	NA	25	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.040000	0.522388	-79(CTTTTTAGATCC,+,0.00)
mm_103199.1	chr11	70651771	70651971	-	1	NA	NA	NA	2779	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.000000	0.378109	
mm_125705.1	chr15	68258197	68258397	+	1	NA	NA	NA	559	NM_001145888	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.065000	0.587065	
mm_105748.1	chr11	109452977	109453177	-	1	NA	NA	NA	12999	NR_040680	100503496	Mm.265874	NR_040680		LOC100503496	-	uncharacterized LOC100503496	ncRNA	0.030000	0.562189	
mm_86690.1	chr10	18431175	18431375	+	1	NA	NA	NA	23600	NM_173390	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.030000	0.616915	
mm_132330.1	chr16	33818793	33818993	+	1	NA	NA	NA	-10772	NM_010580	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.010000	0.452736	
mm_30405.1	chr3	152253605	152253805	-	1	NA	NA	NA	12615	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.010000	0.427861	
mm_112469.1	chr13	5868304	5868504	+	1	NA	NA	NA	6915	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.020000	0.363184	
mm_84759.1	chr9	75597593	75597793	-	1	NA	NA	NA	1440	NM_001038710	50876	Mm.291880	NM_016711	ENSMUSG00000032186	Tmod2	N-Tmod|NTMOD	tropomodulin 2	protein-coding	0.015000	0.467662	
mm_111863.1	chr12	107974848	107975048	-	1	NA	NA	NA	28466	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.025000	0.328358	-81(CCCCCTTAAAAG,-,0.00),-80(CCCCTTAAAAGG,-,0.00),-79(CCCTTAAAAGGA,+,0.00),-78(CCTTAAAAGGAA,+,0.00)
mm_133425.1	chr16	87454882	87455082	+	1	NA	NA	NA	-3	NM_024258	74112	Mm.152941	NM_024258	ENSMUSG00000025616	Usp16	1200004E02Rik|2810483I07Rik|6330514E22Rik|UBPM	ubiquitin specific peptidase 16	protein-coding	0.095000	0.676617	
mm_85538.1	chr9	106655989	106656189	-	1	NA	NA	NA	20	NM_001160353	108068	Mm.410822	NM_001160353	ENSMUSG00000023192	Grm2	4930441L02Rik|Gprc1b|mGluR2|mGluR7	glutamate receptor, metabotropic 2	protein-coding	0.105000	0.746269	
mm_70887.1	chr8	25518692	25518892	+	1	NA	NA	NA	33	NM_001079908	14182	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.110000	0.711443	
mm_68319.1	chr7	106441008	106441208	-	1	NA	NA	NA	-35	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.005000	0.497512	
mm_107968.1	chr12	72761141	72761341	+	1	NA	NA	NA	30	NM_008910	19042	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.185000	0.825871	
mm_28932.1	chr3	98881927	98882127	-	1	NA	NA	NA	11203	NM_019545	56185	Mm.281874	NM_019545	ENSMUSG00000027870	Hao2	AI325478|Hao-2|Hao3|Haox3	hydroxyacid oxidase 2	protein-coding	0.000000	0.502488	
mm_61523.1	chr7	78913916	78914116	+	1	NA	NA	NA	-219	NM_001113527	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.015000	0.537313	
mm_117141.1	chr13	60941836	60942036	-	1	NA	NA	NA	-1	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding	0.005000	0.462687	
mm_123841.1	chr14	70642212	70642412	-	1	NA	NA	NA	-44	NM_008004	14171	Mm.12814	NM_008004	ENSMUSG00000022101	Fgf17	-	fibroblast growth factor 17	protein-coding	0.030000	0.611940	-39(CTCCTTTTAAGG,-,0.00),-38(TCCTTTTAAGGC,-,0.00),-37(CCTTTTAAGGCT,+,0.00)
mm_55229.1	chr6	52240385	52240585	-	1	NA	NA	NA	369	NM_001122950	15395	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0.080000	0.597015	
mm_13239.1	chr2	98662405	98662605	+	1	NA	NA	NA	1194848	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.035000	0.353234	
mm_173196.1	chrX	62776266	62776466	-	1	NA	NA	NA	-249355	NR_045442	75545	Mm.391270	NR_045442	ENSMUSG00000085757	1700019B21Rik	-	RIKEN cDNA 1700019B21 gene	ncRNA	0.030000	0.467662	
mm_49586.1	chr6	30642845	30643045	+	1	NA	NA	NA	3727	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.025000	0.537313	
mm_89432.1	chr10	91096596	91096796	+	1	NA	NA	NA	13657	NM_026166	67454	Mm.252843	NM_026166	ENSMUSG00000019975	Ikbip	1200009F10Rik|1700023M03Rik|D18354|Ikip	IKBKB interacting protein	protein-coding	0.010000	0.353234	
mm_35061.1	chr4	6453571	6453771	-	1	NA	NA	NA	600	NM_010945	18201	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.100000	0.661692	
mm_166717.1	chr6	119196645	119196845	-	1	NA	NA	NA	-336	NM_001255999	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.030000	0.542289	
mm_124356.1	chr14	105116865	105117065	-	1	NA	NA	NA	-2289	NR_040628	100502987	Mm.124957	NR_040628		Gm17066	-	predicted gene 17066	ncRNA	0.000000	0.328358	29(TTTTATAAAAGG,-,0.00),47(TCTTTTAAATGG,+,0.00)
mm_71972.1	chr8	70579760	70579960	+	1	NA	NA	NA	-14621	NM_023627	71780	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.015000	0.482587	
mm_32046.1	chr4	95969855	95970055	+	1	NA	NA	NA	-2300	NR_045776	319247	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0.000000	0.497512	
mm_49688.1	chr6	33375150	33375350	+	1	NA	NA	NA	126100	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.005000	0.407960	
mm_138283.1	chr17	34610841	34611041	+	1	NA	NA	NA	1927	NM_018862	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.045000	0.631841	
mm_119094.1	chr14	30892582	30892782	+	1	NA	NA	NA	6206	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.010000	0.577114	
mm_145444.1	chr18	59175383	59175583	+	1	NA	NA	NA	143	NM_001081328	78923	Mm.84007	NM_001081328	ENSMUSG00000058152	Chsy3	4833446K15Rik|AI662215	chondroitin sulfate synthase 3	protein-coding	0.135000	0.761194	
mm_32192.1	chr4	101292203	101292403	+	1	NA	NA	NA	-27021	NM_146145	16451	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.100000	0.636816	
mm_88796.1	chr10	80677314	80677514	+	1	NA	NA	NA	-1121	NM_021462	17347	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.010000	0.442786	
mm_135442.1	chr16	45454820	45455020	-	1	NA	NA	NA	38049	NM_001005854	208166	Mm.451852	NM_001005854	ENSMUSG00000053182	Gm609	Gm1749|isec1	predicted gene 609	protein-coding	0.000000	0.378109	87(TCTTTTATGGAT,+,0.00)
mm_14473.1	chr2	131491864	131492064	+	1	NA	NA	NA	102	NM_001177838	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.135000	0.791045	
mm_149231.1	chr19	10182791	10182991	+	1	NA	NA	NA	3	NM_146094	76267	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0.150000	0.736318	
mm_34401.1	chr4	145214190	145214390	+	1	NA	NA	NA	-19285	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.010000	0.582090	
mm_72390.1	chr8	81767479	81767679	+	1	NA	NA	NA	425017	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.015000	0.517413	
mm_131731.1	chr16	21855056	21855256	+	1	NA	NA	NA	-36813	NM_172821	71751	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0.005000	0.487562	
mm_93591.1	chr10	117071698	117071898	-	1	NA	NA	NA	-7984	NM_007636	12461	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.005000	0.383085	
mm_57503.1	chr6	125460494	125460694	-	1	NA	NA	NA	34161	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.035000	0.437811	
mm_6917.1	chr1	84839648	84839848	-	1	NA	NA	NA	-93	NM_025386	66153	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.030000	0.497512	-50(CACTTTAAAAAC,-,0.00)
mm_77461.1	chr8	122094743	122094943	-	1	NA	NA	NA	116819	NR_106096	102466915		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	0.005000	0.487562	
mm_128922.1	chr15	73830883	73831083	-	1	NA	NA	NA	8688	NM_001033365	268816	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding	0.010000	0.572139	
mm_158821.1	chrX	167382605	167382805	-	1	NA	NA	NA	44	NM_026662	110639	Mm.272955	NM_026662	ENSMUSG00000025742	Prps2	2610101M19Rik|AA589463|AI464149|Prps-2	phosphoribosyl pyrophosphate synthetase 2	protein-coding	0.050000	0.651741	
mm_75978.1	chr8	72160737	72160937	-	1	NA	NA	NA	-363	NM_023126	17274	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	0.100000	0.631841	
mm_118332.1	chr13	113794308	113794508	-	1	NA	NA	NA	-100	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.095000	0.686567	-33(GTCTATAAAAGG,-,0.00)
mm_24614.1	chr3	93468654	93468854	+	1	NA	NA	NA	0	NM_027762	71325	Mm.68064	NM_027762	ENSMUSG00000027908	Tchhl1	5430400H23Rik|AA589420|S100a17|Thhl1	trichohyalin-like 1	protein-coding	0.015000	0.522388	
mm_171926.1	chr5	60848079	60848279	-	1	NA	NA	NA	-862177	NR_040682	71057	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.005000	0.402985	
mm_110191.1	chr12	27340163	27340363	-	1	NA	NA	NA	2455	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.010000	0.288557	
mm_143182.1	chr17	57290805	57291005	-	1	NA	NA	NA	11805	NM_001163815	22324	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.015000	0.487562	
mm_33780.1	chr4	134853496	134853696	+	1	NA	NA	NA	-251	NM_025382	66146	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61	transmembrane protein 57	protein-coding	0.105000	0.572139	-48(GCTTATAAATAG,+,0.00)
mm_48796.1	chr5	148928606	148928806	-	1	NA	NA	NA	-59	NM_153572	231912	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	0.085000	0.621891	
mm_155491.1	chrX	73716902	73717102	+	1	NA	NA	NA	405	NM_007435	11666	Mm.365	NM_007435	ENSMUSG00000031378	Abcd1	ALDP|Ald|Aldgh	ATP-binding cassette, sub-family D (ALD), member 1	protein-coding	0.030000	0.611940	
mm_102669.1	chr11	65162842	65163042	-	1	NA	NA	NA	19	NM_001099288	216831	Mm.134338	NM_175003	ENSMUSG00000033389	Arhgap44	6330543G20|AI840762|AU040829|AW493732|Rich2	Rho GTPase activating protein 44	protein-coding	0.085000	0.701493	
mm_149420.1	chr19	11437049	11437249	+	1	NA	NA	NA	-6409	NM_021718	60361	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	0.000000	0.402985	
mm_45959.1	chr5	90464031	90464231	-	1	NA	NA	NA	3261	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.467662	
mm_16767.1	chr2	9878374	9878574	-	1	NA	NA	NA	126	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.035000	0.472637	
mm_148045.1	chr18	70528512	70528712	-	1	NA	NA	NA	1709	NM_001136090	26447	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	0.025000	0.368159	
mm_41292.1	chr5	90463972	90464172	+	1	NA	NA	NA	3202	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.472637	
mm_154550.1	chrM	14908	15108	-	1	NA	NA	NA	NA	NA									0.025000	0.412935	
mm_29016.1	chr3	101836132	101836332	-	1	NA	NA	NA	-9	NM_172295	242125	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0.025000	0.562189	
mm_65797.1	chr7	28907284	28907484	-	1	NA	NA	NA	25728	NM_001110807	60594	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	0.010000	0.537313	
mm_108576.1	chr12	84996375	84996575	+	1	NA	NA	NA	154	NM_178363	56531	Mm.153183	NM_178363	ENSMUSG00000021244	Ylpm1	A930013E17Rik|ZAP|Zap3	YLP motif containing 1	protein-coding	0.165000	0.716418	
mm_41688.1	chr5	100553632	100553832	+	1	NA	NA	NA	18473	NM_139198	231507	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.015000	0.412935	
mm_57314.1	chr6	124727114	124727314	-	1	NA	NA	NA	5940	NM_013545	15170	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.020000	0.462687	
mm_159126.1	chr2	73312440	73312640	-	1	NA	NA	NA	52	NM_025854	66935	Mm.292140	NM_025854	ENSMUSG00000041777	Cir1	1700023B02Rik|2810021A19Rik|Cicr|Cir	corepressor interacting with RBPJ, 1	protein-coding	0.070000	0.547264	
mm_88746.1	chr10	80285240	80285440	+	1	NA	NA	NA	-7091	NM_009091	20054	Mm.643	NM_009091	ENSMUSG00000063457	Rps15	rig	ribosomal protein S15	protein-coding	0.020000	0.641791	
mm_93872.1	chr10	123196839	123197039	-	1	NA	NA	NA	80	NM_027604	14479	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	0.140000	0.711443	
mm_152907.1	chr19	26260393	26260593	-	1	NA	NA	NA	-344667	NM_011416	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.020000	0.353234	
mm_159120.1	chr2	69705421	69705621	-	1	NA	NA	NA	7085	NM_177244	320720	Mm.289566	NM_177244	ENSMUSG00000027086	Fastkd1	5330408N05Rik|mKIAA1800	FAST kinase domains 1	protein-coding	0.015000	0.378109	
mm_58259.1	chr6	145210765	145210965	-	1	NA	NA	NA	105	NM_177222	320662	Mm.207779	NM_177222	ENSMUSG00000043541	Casc1	A230084G12Rik|Las1	cancer susceptibility candidate 1	protein-coding	0.045000	0.547264	
mm_32643.1	chr4	115057280	115057480	+	1	NA	NA	NA	-431	NM_001287388	21349	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.045000	0.562189	
mm_109928.1	chr12	8674739	8674939	-	1	NA	NA	NA	158	NM_030723	80913	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.060000	0.641791	
mm_21649.1	chr2	164333525	164333725	-	1	NA	NA	NA	860	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.025000	0.502488	53(TGGTTTTAAAGG,-,0.00)
mm_145506.1	chr18	60391473	60391673	+	1	NA	NA	NA	15544	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.358209	6(GTTTTTAAACTG,+,0.00)
mm_50158.1	chr6	41547261	41547461	+	1	NA	NA	NA	25585	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.482587	
mm_90727.1	chr10	5194698	5194898	-	1	NA	NA	NA	-91	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.045000	0.636816	
mm_127601.1	chr15	102401853	102402053	+	1	NA	NA	NA	-4363	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.015000	0.502488	
mm_25157.1	chr3	103029018	103029218	+	1	NA	NA	NA	8572	NM_144901	229663	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0.015000	0.333333	
mm_125781.1	chr15	74715939	74716139	+	1	NA	NA	NA	1200	NM_028216	72373	Mm.46395	NM_028216	ENSMUSG00000022598	Psca	2210408B04Rik	prostate stem cell antigen	protein-coding	0.020000	0.562189	
mm_99657.1	chr11	105731641	105731841	+	1	NA	NA	NA	141755	NM_181071	77097	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.020000	0.442786	
mm_8218.1	chr1	138158979	138159179	-	1	NA	NA	NA	16047	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.462687	
mm_126600.1	chr15	82379298	82379498	+	1	NA	NA	NA	862	NM_019823	56448	Mm.474216	NM_019823	ENSMUSG00000061740	Cyp2d22	2D22	cytochrome P450, family 2, subfamily d, polypeptide 22	protein-coding	0.000000	0.437811	
mm_90068.1	chr10	116325131	116325331	+	1	NA	NA	NA	23857	NM_029928	19263	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0.005000	0.363184	
mm_90060.1	chr10	116275456	116275656	+	1	NA	NA	NA	-25818	NM_029928	19263	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0.030000	0.477612	
mm_164835.1	chr18	39026585	39026785	+	1	NA	NA	NA	33540	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.030000	0.512438	
mm_2006.1	chr1	87127262	87127462	+	1	NA	NA	NA	2354	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.050000	0.611940	
mm_130444.1	chr15	98482637	98482837	-	1	NA	NA	NA	-54	NM_010679	16770	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0.015000	0.487562	
mm_130743.1	chr15	101256076	101256276	-	1	NA	NA	NA	-10670	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.005000	0.522388	
mm_87430.1	chr10	50894651	50894851	+	1	NA	NA	NA	-900	NM_011376	20464	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded homolog 1 (Drosophila)	protein-coding	0.050000	0.567164	
mm_147353.1	chr18	43360897	43361097	-	1	NA	NA	NA	12275	NM_001136086	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.030000	0.537313	
mm_7062.1	chr1	87510466	87510666	-	1	NA	NA	NA	-204	NM_019867	53972	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	0.090000	0.701493	
mm_155019.1	chrX	42059815	42060015	+	1	NA	NA	NA	-7921	NM_009688	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.010000	0.417910	
mm_138229.1	chr17	34372175	34372375	+	1	NA	NA	NA	-4857	NM_001111094	100038862	Mm.440426	NM_201405	ENSMUSG00000062638	Btnl1	Btnl3|Gm316|Gm33	butyrophilin-like 1	protein-coding	0.015000	0.537313	-33(GTATATAAAAAC,-,0.00)
mm_105523.1	chr11	106300342	106300542	-	1	NA	NA	NA	1454	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.050000	0.552239	
mm_154861.1	chrX	20658903	20659103	+	1	NA	NA	NA	499	NM_001276317	22201	Mm.1104	NM_009457	ENSMUSG00000001924	Uba1	A1S9|Sbx|Ube-1|Ube1x	ubiquitin-like modifier activating enzyme 1	protein-coding	0.040000	0.592040	
mm_72224.1	chr8	72741631	72741831	+	1	NA	NA	NA	18461	NM_009188	20467	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0.035000	0.572139	
mm_122894.1	chr14	54949830	54950030	-	1	NA	NA	NA	-788	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.005000	0.562189	
mm_48826.1	chr5	149052946	149053146	-	1	NA	NA	NA	11	NM_010439	15289	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.065000	0.621891	
mm_46291.1	chr5	100383888	100384088	-	1	NA	NA	NA	32246	NM_026969	69162	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	0.020000	0.512438	
mm_66468.1	chr7	44974350	44974550	-	1	NA	NA	NA	401	NM_153679	78070	Mm.231465	NM_153679	ENSMUSG00000007783	Cpt1c	6530437J22Rik|9630004I06Rik	carnitine palmitoyltransferase 1c	protein-coding	0.040000	0.562189	
mm_100524.1	chr11	120576808	120577008	+	1	NA	NA	NA	-3972	NM_011032	18453	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.005000	0.472637	
mm_147785.1	chr18	61632428	61632628	-	1	NA	NA	NA	-7125	NR_045420	545261	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0.045000	0.577114	
mm_133865.1	chr16	96361634	96361834	+	1	NA	NA	NA	-23	NM_001177887	72058	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.025000	0.537313	
mm_33173.1	chr4	126046863	126047063	+	1	NA	NA	NA	35	NM_025544	66407	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	0.105000	0.681592	
mm_169492.1	chr14	75292100	75292300	+	1	NA	NA	NA	7827	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0.010000	0.447761	
mm_4828.1	chr1	185534297	185534497	+	1	NA	NA	NA	-2939	NR_030555	100124483		NR_030555	ENSMUSG00000076976	Mir297c	Mirn297c	microRNA 297c	ncRNA	0.000000	0.512438	
mm_144872.1	chr18	36749150	36749350	+	1	NA	NA	NA	4594	NM_011879	24010	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	0.015000	0.492537	
mm_64178.1	chr7	141458757	141458957	+	1	NA	NA	NA	-2237	NM_001025103	213573	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.030000	0.616915	
mm_98490.1	chr11	94951412	94951612	+	1	NA	NA	NA	15288	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.030000	0.542289	
mm_164170.1	chr15	74727941	74728141	-	1	NA	NA	NA	-15	NM_020519	57277	Mm.27630	NM_020519	ENSMUSG00000022596	Slurp1	1110021N19Rik|AI415082|ARS|ArsB|Slurp-1	secreted Ly6/Plaur domain containing 1	protein-coding	0.015000	0.597015	
mm_129734.1	chr15	82146951	82147151	-	1	NA	NA	NA	-218	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.085000	0.606965	
mm_138854.1	chr17	40937018	40937218	+	1	NA	NA	NA	2433	NM_008650	17850	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding	0.015000	0.447761	
mm_147913.1	chr18	65505414	65505614	-	1	NA	NA	NA	74517	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.020000	0.567164	
mm_17249.1	chr2	25627867	25628067	-	1	NA	NA	NA	7	NM_007995	14133	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	0.020000	0.552239	
mm_65218.1	chr7	19698327	19698527	-	1	NA	NA	NA	-29	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.035000	0.547264	
mm_15206.1	chr2	154212920	154213120	+	1	NA	NA	NA	-10722	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.020000	0.582090	
mm_41114.1	chr5	87779911	87780111	+	1	NA	NA	NA	5561	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.015000	0.298507	
mm_160476.1	chr8	120535813	120536013	+	1	NA	NA	NA	56	NM_001145897	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.120000	0.701493	
mm_100583.1	chr11	120938953	120939153	+	1	NA	NA	NA	-6181	NM_027745	71276	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.020000	0.542289	
mm_122448.1	chr14	45295870	45296070	-	1	NA	NA	NA	22602	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.005000	0.338308	
mm_123704.1	chr14	69804028	69804228	-	1	NA	NA	NA	1417	NM_153514	246710	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0.010000	0.512438	
mm_68712.1	chr7	119895354	119895554	-	1	NA	NA	NA	4	NM_173408	233805	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0.035000	0.582090	
mm_40647.1	chr5	65024240	65024440	+	1	NA	NA	NA	54022	NR_030577	100124451		NR_030577	ENSMUSG00000077042	Mir574	Mirn574|mir-574|mmu-mir-574	microRNA 574	ncRNA	0.015000	0.507463	
mm_165306.1	chr2	98663657	98663857	+	1	NA	NA	NA	1196100	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.015000	0.348259	
mm_23348.1	chr3	54755482	54755682	+	1	NA	NA	NA	0	NM_019483	55994	Mm.244353	NM_019483	ENSMUSG00000027796	Smad9	MADH6|Madh8|Madh9|Smad8	SMAD family member 9	protein-coding	0.140000	0.786070	
mm_102088.1	chr11	52282472	52282672	-	1	NA	NA	NA	23	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.035000	0.636816	
mm_78498.1	chr9	32732056	32732256	+	1	NA	NA	NA	36114	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.020000	0.482587	
mm_5970.1	chr1	57377408	57377608	-	1	NA	NA	NA	36	NR_037999	75323	Mm.362968	NR_037999	ENSMUSG00000097519	4930558J18Rik	-	RIKEN cDNA 4930558J18 gene	ncRNA	0.105000	0.656716	88(CTGTATAAAAGC,-,0.00)
mm_87248.1	chr10	41303872	41304072	+	1	NA	NA	NA	-731	NM_133999	103199	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0.040000	0.587065	
mm_88478.1	chr10	77613715	77613915	+	1	NA	NA	NA	106	NR_125903	20610	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.000000	0.492537	
mm_83604.1	chr9	48604890	48605090	-	1	NA	NA	NA	133	NM_001311062	18113	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0.020000	0.517413	
mm_44436.1	chr5	21188407	21188607	-	1	NA	NA	NA	2240	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.005000	0.427861	
mm_106872.1	chr12	8010393	8010593	+	1	NA	NA	NA	32816	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.020000	0.442786	
mm_165432.1	chr2	153527872	153528072	+	1	NA	NA	NA	1999	NM_001134300	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.140000	0.791045	
mm_66608.1	chr7	45466185	45466385	-	1	NA	NA	NA	613	NM_007527	12028	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.010000	0.601990	
mm_64868.1	chr7	13837311	13837511	-	1	NA	NA	NA	-1	NM_001111296	20859	Mm.260026	NM_001111296	ENSMUSG00000078798	Sult2a1	ST2A1|Std|Sth1|mSTa1	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 1	protein-coding	0.005000	0.343284	
mm_93104.1	chr10	91007221	91007421	-	1	NA	NA	NA	75422	NM_001042558	11783	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	0.005000	0.427861	-5(TCCTTTATAGCC,+,0.00)
mm_138585.1	chr17	35505939	35506139	+	1	NA	NA	NA	7	NM_013633	18999	Mm.17031	NM_013633	ENSMUSG00000024406	Pou5f1	NF-A3|Oct-3|Oct-3/4|Oct-4|Oct3|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4	POU domain, class 5, transcription factor 1	protein-coding	0.030000	0.666667	
mm_141382.1	chr17	29078968	29079168	-	1	NA	NA	NA	58	NR_036469	100504267	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|OTTMUSG00000031656|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0.040000	0.631841	
mm_103445.1	chr11	76126602	76126802	-	1	NA	NA	NA	52928	NM_026664	68299	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	0.010000	0.427861	-7(TTTTTTAAAGAC,+,0.00)
mm_116194.1	chr13	31582409	31582609	-	1	NA	NA	NA	4	NR_029439	71307	Mm.376184	NR_029439	ENSMUSG00000038408	1700018A04Rik	4930551G20Rik|4933439J11Rik	RIKEN cDNA 1700018A04 gene	ncRNA	0.020000	0.477612	
mm_108606.1	chr12	85474205	85474405	+	1	NA	NA	NA	404	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.070000	0.621891	
mm_125731.1	chr15	73176040	73176240	+	1	NA	NA	NA	8807	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.030000	0.512438	
mm_119882.1	chr14	54894043	54894243	+	1	NA	NA	NA	0	NM_019402	54196	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	0.140000	0.726368	
mm_56776.1	chr6	116629059	116629259	-	1	NA	NA	NA	-160	NM_026057	67255	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0.025000	0.482587	
mm_51888.1	chr6	90604627	90604827	+	1	NA	NA	NA	-153	NM_027868	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.040000	0.577114	56(GGCTTTAAAAAT,-,0.00)
mm_96458.1	chr11	67586530	67586730	+	1	NA	NA	NA	130	NM_001109657	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.015000	0.542289	
mm_21623.1	chr2	164276990	164277190	-	1	NA	NA	NA	1217	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.015000	0.417910	
mm_83517.1	chr9	46154492	46154692	-	1	NA	NA	NA	-74038	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.005000	0.393035	70(TTTTTTAAAGTC,+,0.00)
mm_76866.1	chr8	105496879	105497079	-	1	NA	NA	NA	-109	NM_175160	70796	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik	zinc finger, DHHC domain containing 1	protein-coding	0.110000	0.736318	
mm_139163.1	chr17	47557512	47557712	+	1	NA	NA	NA	-35855	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.015000	0.517413	
mm_124658.1	chr15	5496107	5496307	+	1	NA	NA	NA	-111	NR_045274	71432	Mm.291087	NR_045274		5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.000000	0.442786	56(AGCTAGAAAAGG,-,0.00)
mm_16928.1	chr2	13793700	13793900	-	1	NA	NA	NA	-280	NM_145838	241230	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	0.120000	0.696517	
mm_37461.1	chr4	123472295	123472495	-	1	NA	NA	NA	-60484	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.020000	0.422886	
mm_128336.1	chr15	38473627	38473827	-	1	NA	NA	NA	16820	NR_105916	102465574		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.090000	0.751244	
mm_126197.1	chr15	78850847	78851047	+	1	NA	NA	NA	4582	NM_025622	107753	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	0.005000	0.517413	-26(GACCCTAAAGGC,-,0.00)
mm_31411.1	chr4	48048016	48048216	+	1	NA	NA	NA	2811	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.050000	0.636816	
mm_132718.1	chr16	43510094	43510294	+	1	NA	NA	NA	-89998	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.000000	0.333333	
mm_44297.1	chr5	8622861	8623061	-	1	NA	NA	NA	-9	NM_198620	242819	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0.160000	0.781095	
mm_79058.1	chr9	46230050	46230250	+	1	NA	NA	NA	1520	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.075000	0.626866	
mm_126210.1	chr15	78899315	78899515	+	1	NA	NA	NA	-353	NR_133564	20401	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	0.035000	0.611940	
mm_91548.1	chr10	39731893	39732093	-	1	NA	NA	NA	14	NR_038037	327744	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	0.155000	0.786070	
mm_6214.1	chr1	66838388	66838588	-	1	NA	NA	NA	-20893	NM_001122738	68691	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.015000	0.407960	-58(CCTTTTATCGGA,+,0.00)
mm_118957.1	chr14	27403043	27403243	+	1	NA	NA	NA	-25704	NM_028945	218850	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0.015000	0.477612	
mm_58968.1	chr7	18992311	18992511	+	1	NA	NA	NA	1166	NM_145579	232934	Mm.440069	NM_145579	ENSMUSG00000048481	Mypop	Myodysa|P42pop	Myb-related transcription factor, partner of profilin	protein-coding	0.105000	0.681592	
mm_987.1	chr1	58586291	58586491	+	1	NA	NA	NA	-6	NM_025597	66495	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	0.050000	0.512438	
mm_171983.1	chr5	92140848	92141048	-	1	NA	NA	NA	3010	NM_019490	56041	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0.035000	0.502488	
mm_166349.1	chr5	119670888	119671088	+	1	NA	NA	NA	126	NM_198052	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.085000	0.621891	
mm_145878.1	chr18	65476402	65476602	+	1	NA	NA	NA	45505	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.005000	0.338308	39(CTTTTTATAGGA,+,0.00),70(CGTTATTTAAGC,-,0.00)
mm_90425.1	chr10	127498771	127498971	+	1	NA	NA	NA	-2846	NM_177707	237611	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0.015000	0.467662	
mm_13365.1	chr2	103454254	103454454	+	1	NA	NA	NA	30286	NM_010125	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.005000	0.388060	
mm_132436.1	chr16	35923671	35923871	+	1	NA	NA	NA	-14699	NM_030253	80285	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.010000	0.417910	
mm_61306.1	chr7	67952299	67952499	+	1	NA	NA	NA	142	NM_010513	16001	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.140000	0.731343	
mm_106303.1	chr11	118290018	118290218	-	1	NA	NA	NA	126	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.125000	0.701493	
mm_137627.1	chr17	28328484	28328684	+	1	NA	NA	NA	113	NM_011287	19896	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.145000	0.666667	
mm_65098.1	chr7	19272634	19272834	-	1	NA	NA	NA	-880	NM_001282022	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.035000	0.537313	
mm_39675.1	chr5	25515982	25516182	+	1	NA	NA	NA	15	NM_198621	242891	Mm.291521	NM_198621	ENSMUSG00000038044	Cct8l1	Gm443	chaperonin containing TCP1, subunit 8 (theta)-like 1	protein-coding	0.020000	0.527363	
mm_6530.1	chr1	74748771	74748971	-	1	NA	NA	NA	84	NM_153744	241113	Mm.166501	NM_153744	ENSMUSG00000006542	Prkag3	AMPKg3L|AMPKg3S|Amkg3|Ampkg3	protein kinase, AMP-activated, gamma 3 non-catatlytic subunit	protein-coding	0.060000	0.651741	
mm_164.1	chr1	12772036	12772236	+	1	NA	NA	NA	53591	NM_172294	240725	Mm.45563	NM_172294	ENSMUSG00000016918	Sulf1	AI467640|AW121680|mKIAA1077	sulfatase 1	protein-coding	0.010000	0.388060	20(CTGTTTAAAAGG,-,0.00)
mm_158816.1	chrX	167328518	167328718	-	1	NA	NA	NA	1953	NM_001290757	170743	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	0.005000	0.452736	76(GAGTTTAAAGAG,-,0.00)
mm_131932.1	chr16	23611294	23611494	+	1	NA	NA	NA	1475	NM_023386	67775	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.005000	0.557214	
mm_65764.1	chr7	28741624	28741824	-	1	NA	NA	NA	57	NM_011885	24030	Mm.358650	NM_011885	ENSMUSG00000045948	Mrps12	AI327385|Rpms12|rps12	mitochondrial ribosomal protein S12	protein-coding	0.035000	0.577114	
mm_141472.1	chr17	30612538	30612738	-	1	NA	NA	NA	21	NM_025374	109801	Mm.261984	NM_025374	ENSMUSG00000024026	Glo1	0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo	glyoxalase 1	protein-coding	0.050000	0.636816	
mm_76602.1	chr8	90347098	90347298	-	1	NA	NA	NA	1054	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding	0.035000	0.482587	
mm_96717.1	chr11	69664278	69664478	+	1	NA	NA	NA	1335	NR_035455	100316840		NR_035455	ENSMUSG00000088752	Mir1934	mir-1934|mmu-mir-1934	microRNA 1934	ncRNA	0.025000	0.567164	
mm_143215.1	chr17	62882578	62882778	-	1	NA	NA	NA	-1361	NM_010109	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.040000	0.457711	
mm_79298.1	chr9	51765245	51765445	+	1	NA	NA	NA	-7	NM_175535	244867	Mm.400352	NM_175535	ENSMUSG00000053199	Arhgap20	6530403F17Rik|A530023E23Rik|RARhoGAP|mKIAA1391	Rho GTPase activating protein 20	protein-coding	0.190000	0.835821	
mm_23593.1	chr3	64977390	64977590	+	1	NA	NA	NA	-131878	NM_010597	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.000000	0.432836	-32(CTTTTTAGGGAC,+,0.00)
mm_38231.1	chr4	136021629	136021829	-	1	NA	NA	NA	-80	NM_013736	27224	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	0.130000	0.706468	
mm_74301.1	chr8	126298536	126298736	+	1	NA	NA	NA	57	NM_175434	210027	Mm.405238	NM_175434	ENSMUSG00000057060	Slc35f3	B230375D17Rik	solute carrier family 35, member F3	protein-coding	0.135000	0.766169	
mm_132379.1	chr16	34921456	34921656	+	1	NA	NA	NA	17773	NR_040536	76649	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.025000	0.592040	
mm_109286.1	chr12	109558642	109558842	+	1	NA	NA	NA	-4950	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.010000	0.477612	
mm_87354.1	chr10	43610373	43610573	+	1	NA	NA	NA	17046	NR_033558	414125	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	0.000000	0.422886	
mm_21441.1	chr2	158668656	158668856	-	1	NA	NA	NA	1621	NM_001159662	228852	Mm.150540	NM_153089	ENSMUSG00000037754	Ppp1r16b	ANKRD4|C130078N17Rik|TIMAP|Wdt4	protein phosphatase 1, regulatory (inhibitor) subunit 16B	protein-coding	0.035000	0.597015	
mm_82910.1	chr9	34589187	34589387	-	1	NA	NA	NA	100556	NM_001190911	67703	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kin of IRRE like 3 (Drosophila)	protein-coding	0.015000	0.462687	
mm_94575.1	chr11	11690061	11690261	+	1	NA	NA	NA	-16	NM_001301865	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.010000	0.497512	
mm_76264.1	chr8	84023172	84023372	-	1	NA	NA	NA	1798	NM_028877	74337	Mm.250943	NM_028877	ENSMUSG00000047986	Palm3	4432412L15Rik|AL024300	paralemmin 3	protein-coding	0.015000	0.532338	
mm_109672.1	chr12	113074400	113074600	+	1	NA	NA	NA	-2	NM_029381	75671	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0.060000	0.631841	
mm_34182.1	chr4	140700408	140700608	+	1	NA	NA	NA	-965	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.035000	0.552239	
mm_150223.1	chr19	33961135	33961335	+	1	NA	NA	NA	-13	NM_026334	67717	Mm.329816	NM_026334	ENSMUSG00000024768	Lipf	2310051B21Rik|AV082900	lipase, gastric	protein-coding	0.000000	0.348259	-22(TGGTATATAAGG,-,0.00)
mm_121129.1	chr14	101840779	101840979	+	1	NA	NA	NA	256	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.030000	0.407960	
mm_120540.1	chr14	67234716	67234916	+	1	NA	NA	NA	1524	NM_001276387	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.035000	0.532338	
mm_163311.1	chr12	4850624	4850824	+	1	NA	NA	NA	7421	NM_001170858	238037	Mm.146087	NM_173416	ENSMUSG00000051721	BC068281	A430092C04|Wdcp	cDNA sequence BC068281	protein-coding	0.035000	0.542289	
mm_47485.1	chr5	123865405	123865605	-	1	NA	NA	NA	11	NM_030701	80885	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0.030000	0.472637	
mm_90521.1	chr10	128058974	128059174	+	1	NA	NA	NA	92	NM_019766	56351	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3 (cytosolic)	protein-coding	0.140000	0.711443	
mm_4277.1	chr1	171607412	171607612	+	1	NA	NA	NA	-102	NM_008534	17085	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	0.015000	0.497512	
mm_143898.1	chr17	84682838	84683038	-	1	NA	NA	NA	73	NM_031884	27409	Mm.289590	NM_031884	ENSMUSG00000040505	Abcg5	cmp|sterolin-1|trac	ATP-binding cassette, sub-family G (WHITE), member 5	protein-coding	0.020000	0.537313	
mm_72750.1	chr8	85171425	85171625	+	1	NA	NA	NA	19601	NM_001037922	624855	Mm.390061	NM_001037922	ENSMUSG00000062687	Cks1brt	EG624855|Gm6531	CDC28 protein kinase 1b, retrogene	protein-coding	0.060000	0.507463	
mm_28169.1	chr3	87885483	87885683	-	1	NA	NA	NA	-21	NM_033573	94315	Mm.35089	NM_033573	ENSMUSG00000004895	Prcc	-	papillary renal cell carcinoma (translocation-associated)	protein-coding	0.035000	0.517413	
mm_162835.1	chr10	82986281	82986481	-	1	NA	NA	NA	884	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.055000	0.666667	
mm_146139.1	chr18	74733680	74733880	+	1	NA	NA	NA	44675	NR_028560	100217466		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	0.015000	0.582090	
mm_153802.1	chr19	46040271	46040471	-	1	NA	NA	NA	-750	NM_010697	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.020000	0.502488	88(CTCTTTTAAGGG,-,0.00),89(TCTTTTAAGGGC,+,0.00)
mm_3412.1	chr1	144317774	144317974	+	1	NA	NA	NA	-68770	NM_015811	50778	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.005000	0.398010	
mm_123037.1	chr14	55560268	55560468	-	1	NA	NA	NA	339	NM_133734	28199	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.050000	0.522388	
mm_142258.1	chr17	39843413	39843613	-	1	NA	NA	NA	516	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.070000	0.656716	
mm_25467.1	chr3	108653818	108654018	+	1	NA	NA	NA	5	NM_145543	229725	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	0.140000	0.721393	
mm_86929.1	chr10	24150854	24151054	+	1	NA	NA	NA	1637	NM_016797	53331	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.000000	0.402985	
mm_55505.1	chr6	69835172	69835372	-	1	NA	NA	NA	-508098	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.497512	
mm_133089.1	chr16	62854205	62854405	+	1	NA	NA	NA	-2	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0.105000	0.761194	
mm_93468.1	chr10	111131792	111131992	-	1	NA	NA	NA	-32910	NM_001003717	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.005000	0.383085	
mm_4119.1	chr1	168502617	168502817	+	1	NA	NA	NA	12074	NR_105766	102465178		NR_105766	ENSMUSG00000098407	Mir6348	Gm27412|mmu-mir-6348	microRNA 6348	ncRNA	0.005000	0.457711	-34(GGATATAAAGGC,-,0.00),-14(AGCTCTAAAAAC,-,0.00)
mm_128298.1	chr15	37458452	37458652	-	1	NA	NA	NA	830	NM_001170867	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.015000	0.437811	
mm_51815.1	chr6	88902322	88902522	+	1	NA	NA	NA	171	NM_011906	24100	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.125000	0.696517	
mm_138098.1	chr17	34048336	34048536	+	1	NA	NA	NA	9298	NM_001317722	12815	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.005000	0.547264	
mm_55776.1	chr6	81033670	81033870	-	1	NA	NA	NA	861893	NR_106091	102465711		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0.040000	0.512438	-36(GCCTATAAAAGC,-,0.00)
mm_109370.1	chr12	109646367	109646567	+	1	NA	NA	NA	-3150	NR_046304	100861570		NR_046304	ENSMUSG00000084549	DQ267100	-	snoRNA DQ267100	snoRNA	0.005000	0.248756	
mm_131335.1	chr16	13358066	13358266	+	1	NA	NA	NA	-255	NM_153588	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.015000	0.447761	71(TCTTTAATAGCT,+,0.00)
mm_34312.1	chr4	141817817	141818017	+	1	NA	NA	NA	8088	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.040000	0.592040	
mm_164362.1	chr16	22895852	22896052	+	1	NA	NA	NA	-1566	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.020000	0.527363	
mm_141004.1	chr17	24943110	24943310	-	1	NA	NA	NA	-6233	NM_013931	30957	Mm.43081	NM_013931	ENSMUSG00000024163	Mapk8ip3	BB120594|D17Wsu15e|JIP-3|JSAP1|JSAP1a|JSAP1b|JSAP1c|JSAP1d|Jip3|Syd2|mKIAA1066	mitogen-activated protein kinase 8 interacting protein 3	protein-coding	0.025000	0.542289	
mm_138590.1	chr17	35506310	35506510	+	1	NA	NA	NA	378	NM_013633	18999	Mm.17031	NM_013633	ENSMUSG00000024406	Pou5f1	NF-A3|Oct-3|Oct-3/4|Oct-4|Oct3|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4	POU domain, class 5, transcription factor 1	protein-coding	0.030000	0.611940	
mm_76378.1	chr8	84838477	84838677	-	1	NA	NA	NA	2088	NM_001297607	19358	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.015000	0.592040	
mm_114358.1	chr13	61003629	61003829	+	1	NA	NA	NA	2182	NM_012007	26898	Mm.31948	NM_012007	ENSMUSG00000055298	Ctsj	CATP|CatRLP|Ctsp	cathepsin J	protein-coding	0.010000	0.417910	
mm_74283.1	chr8	125669752	125669952	+	1	NA	NA	NA	34	NM_028908	74393	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0.140000	0.731343	
mm_35024.1	chr4	4016377	4016577	-	1	NA	NA	NA	3186	NM_181989	242285	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	0.005000	0.442786	28(TTGCTTTAAAGG,-,0.00),30(GCTTTAAAGGTG,+,0.00)
mm_18233.1	chr2	51972855	51973055	-	1	NA	NA	NA	253	NM_001141949	64685	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0.080000	0.592040	
mm_29133.1	chr3	105687658	105687858	-	1	NA	NA	NA	-187	NM_017397	53975	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	0.140000	0.751244	
mm_39318.1	chr5	8067541	8067741	+	1	NA	NA	NA	11099	NM_001080974	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.025000	0.442786	47(GACTTTATATAG,-,0.00),49(CTTTATATAGAG,+,0.00)
mm_166529.1	chr6	28929427	28929627	-	1	NA	NA	NA	-93092	NR_029567	387237		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	0.050000	0.587065	-33(GAGTATATAAGC,-,0.00)
mm_81790.1	chr9	114978429	114978629	+	1	NA	NA	NA	-44542	NM_175380	333433	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	0.105000	0.731343	
mm_118629.1	chr14	21250515	21250715	+	1	NA	NA	NA	174463	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.005000	0.393035	
mm_158346.1	chrX	134276875	134277075	-	1	NA	NA	NA	9	NM_172540	215201	Mm.289368	NM_172540	ENSMUSG00000067369	Trmt2b	4732479N06Rik	TRM2 tRNA methyltransferase 2B	protein-coding	0.060000	0.631841	
mm_140016.1	chr17	73804734	73804934	+	1	NA	NA	NA	-7	NM_020578	57440	Mm.18526	NM_020578	ENSMUSG00000024065	Ehd3	Ehd2	EH-domain containing 3	protein-coding	0.120000	0.691542	27(GCATTTAAACGC,+,0.00)
mm_135246.1	chr16	37539602	37539802	-	1	NA	NA	NA	67	NM_028812	74197	Mm.287795	NM_028812	ENSMUSG00000022828	Gtf2e1	2610024P03Rik|56kDa|AI303800|FE|TFIIE-A	general transcription factor II E, polypeptide 1 (alpha subunit)	protein-coding	0.080000	0.592040	
mm_168727.1	chr12	110695537	110695737	-	1	NA	NA	NA	758	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.025000	0.502488	
mm_26189.1	chr3	138432359	138432559	+	1	NA	NA	NA	-4741	NM_001288578	11532	Mm.3874	NM_007410	ENSMUSG00000028138	Adh5	Adh-5|Adh3|GSNOR	alcohol dehydrogenase 5 (class III), chi polypeptide	protein-coding	0.000000	0.333333	-93(TGCTTTATGAGG,-,0.00)
mm_40670.1	chr5	65423504	65423704	+	1	NA	NA	NA	12238	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.035000	0.512438	
mm_26156.1	chr3	138217670	138217870	+	1	NA	NA	NA	-3	NM_009626	11529	Mm.8473	NM_009626	ENSMUSG00000055301	Adh7	AI325182|Adh-3|Adh-3e|Adh-3t|Adh3|Adh3-e|Adh3-t|Adh4|Adt-1	alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide	protein-coding	0.020000	0.462687	
mm_97336.1	chr11	77293958	77294158	+	1	NA	NA	NA	-54222	NM_001291190	237860	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot homolog 2 (Drosophila)	protein-coding	0.020000	0.462687	
mm_94233.1	chr11	3291249	3291449	+	1	NA	NA	NA	892	NM_019574	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.030000	0.611940	
mm_8216.1	chr1	138155484	138155684	-	1	NA	NA	NA	19542	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.015000	0.368159	-47(GTCCTTTTATGG,-,0.00),-45(CCTTTTATGGGG,+,0.00)
mm_1363.1	chr1	66386842	66387042	+	1	NA	NA	NA	65218	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.025000	0.527363	
mm_26133.1	chr3	137882717	137882917	+	1	NA	NA	NA	15142	NM_001033155	70604	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	0.030000	0.442786	
mm_123825.1	chr14	70619871	70620071	-	1	NA	NA	NA	-1402	NM_001252666	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.020000	0.472637	
mm_19343.1	chr2	90783058	90783258	-	1	NA	NA	NA	414	NM_178755	271813	Mm.61146	NM_178755	ENSMUSG00000040812	Agbl2	4930524K04|A430081C19Rik|CCP2	ATP/GTP binding protein-like 2	protein-coding	0.070000	0.621891	
mm_113702.1	chr13	43171424	43171624	+	1	NA	NA	NA	-23	NM_001252640	67046	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	0.105000	0.671642	
mm_101937.1	chr11	50207440	50207640	-	1	NA	NA	NA	3280	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.045000	0.601990	
mm_68858.1	chr7	126377320	126377520	-	1	NA	NA	NA	514	NM_023712	73658	Mm.11112	NM_023712	ENSMUSG00000030741	Spns1	2210013K02Rik|Spin1|Spinl	spinster homolog 1	protein-coding	0.060000	0.611940	
mm_5357.1	chr1	25756729	25756929	-	1	NA	NA	NA	72878	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.000000	0.303483	-92(TCCTATAAAAGA,-,0.00)
mm_149994.1	chr19	29257862	29258062	+	1	NA	NA	NA	6159	NM_008413	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.005000	0.238806	
mm_59172.1	chr7	24402936	24403136	+	1	NA	NA	NA	3408	NM_028047	71997	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.015000	0.522388	
mm_56498.1	chr6	99266291	99266491	-	1	NA	NA	NA	124	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.010000	0.532338	
mm_39421.1	chr5	15934820	15935020	+	1	NA	NA	NA	229	NM_001110844	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.160000	0.786070	
mm_105463.1	chr11	105181122	105181322	-	1	NA	NA	NA	211	NR_027956	73431	Mm.351426	NM_028539		1700052K11Rik	AI840954	RIKEN cDNA 1700052K11 gene	ncRNA	0.160000	0.786070	
mm_44942.1	chr5	36530438	36530638	-	1	NA	NA	NA	85	NM_001113364	100855	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.075000	0.666667	
mm_37827.1	chr4	131967731	131967931	-	1	NA	NA	NA	46060	NM_001201367	623230	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.025000	0.552239	
mm_43476.1	chr5	136695123	136695323	+	1	NA	NA	NA	1046	NM_001085387	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.020000	0.592040	
mm_67282.1	chr7	78578875	78579075	-	1	NA	NA	NA	-1137	NM_182809	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	0.060000	0.616915	
mm_20642.1	chr2	132029073	132029273	-	1	NA	NA	NA	815	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.075000	0.597015	
mm_157417.1	chrX	38563974	38564174	-	1	NA	NA	NA	12122	NM_028288	72584	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	0.025000	0.527363	
mm_170432.1	chr18	77789834	77790034	+	1	NA	NA	NA	-4616	NM_013831	19201	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.015000	0.497512	
mm_55075.1	chr6	49110992	49111192	-	1	NA	NA	NA	37297	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.010000	0.502488	
mm_26221.1	chr3	138877241	138877441	+	1	NA	NA	NA	135133	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.030000	0.577114	
mm_123391.1	chr14	63405157	63405357	-	1	NA	NA	NA	11930	NM_007549	12143	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.010000	0.557214	
mm_24750.1	chr3	95320056	95320256	+	1	NA	NA	NA	1326	NM_001320492	76893	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.020000	0.497512	
mm_40245.1	chr5	38039213	38039413	+	1	NA	NA	NA	83	NM_026959	71116	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0.085000	0.631841	
mm_145768.1	chr18	65023633	65023833	+	1	NA	NA	NA	206	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.025000	0.582090	
mm_82973.1	chr9	35844000	35844200	-	1	NA	NA	NA	50	NM_029863	77080	Mm.159846	NM_029863	ENSMUSG00000047980	9230110F15Rik	Pate-A|Pate5|mANLP3	RIKEN cDNA 9230110F15 gene	protein-coding	0.005000	0.512438	
mm_171427.1	chr4	134659028	134659228	+	1	NA	NA	NA	45162	NM_207237	230815	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.035000	0.537313	-30(GAGTATATAAGA,-,0.00)
mm_35863.1	chr4	49481075	49481275	-	1	NA	NA	NA	25383	NM_007519	12012	Mm.2859	NM_007519	ENSMUSG00000039653	Baat	AI118337|AI158864|BAT	bile acid-Coenzyme A: amino acid N-acyltransferase	protein-coding	0.005000	0.457711	
mm_85926.1	chr9	111977791	111977991	-	1	NA	NA	NA	140820	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.000000	0.527363	
mm_58908.1	chr7	17203398	17203598	+	1	NA	NA	NA	21	NM_054064	114872	Mm.322280	NM_054064	ENSMUSG00000023159	Psg29	AA102956|AA409969|cea17	pregnancy-specific glycoprotein 29	protein-coding	0.000000	0.477612	
mm_87868.1	chr10	61309705	61309905	+	1	NA	NA	NA	11969	NM_011073	18646	Mm.240313	NM_011073	ENSMUSG00000037202	Prf1	Pfn|Pfp|Prf-1	perforin 1 (pore forming protein)	protein-coding	0.025000	0.512438	
mm_10026.1	chr1	192092480	192092680	-	1	NA	NA	NA	19	NM_011633	22033	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.090000	0.706468	
mm_74354.1	chr8	128166323	128166523	+	1	NA	NA	NA	111802	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.005000	0.402985	
mm_53959.1	chr6	5495747	5495947	-	1	NA	NA	NA	431	NM_013743	27273	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.020000	0.378109	
mm_89271.1	chr10	87860351	87860551	+	1	NA	NA	NA	-660	NM_001111274	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.020000	0.447761	
mm_38680.1	chr4	145019413	145019613	-	1	NA	NA	NA	126376	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.005000	0.422886	9(GCGTCTATAAGA,-,0.00)
mm_118032.1	chr13	101690477	101690677	-	1	NA	NA	NA	2053	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.005000	0.422886	
mm_8517.1	chr1	154816816	154817016	-	1	NA	NA	NA	-90996	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.010000	0.482587	
mm_91606.1	chr10	41450139	41450339	-	1	NA	NA	NA	-119	NM_001277229	268294	Mm.258475	NM_153398	ENSMUSG00000019826	Zbtb24	BC055367|Bif1|Bsg1|ZNF450	zinc finger and BTB domain containing 24	protein-coding	0.045000	0.507463	
mm_15473.1	chr2	157500542	157500742	+	1	NA	NA	NA	-59436	NM_001291129	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.005000	0.532338	
mm_35352.1	chr4	32263055	32263255	-	1	NA	NA	NA	-154280	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.015000	0.462687	
mm_50641.1	chr6	51432569	51432769	+	1	NA	NA	NA	-1	NM_010903	18025	Mm.42138	NM_010903	ENSMUSG00000029832	Nfe2l3	Nrf3	nuclear factor, erythroid derived 2, like 3	protein-coding	0.060000	0.676617	
mm_119219.1	chr14	33216879	33217079	+	1	NA	NA	NA	156	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.025000	0.492537	
mm_139627.1	chr17	57367116	57367316	+	1	NA	NA	NA	8530	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.010000	0.407960	
mm_133617.1	chr16	91560088	91560288	+	1	NA	NA	NA	13094	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.015000	0.388060	
mm_127955.1	chr15	11399534	11399734	-	1	NA	NA	NA	24	NM_033074	110960	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	0.085000	0.641791	
mm_59260.1	chr7	24884488	24884688	+	1	NA	NA	NA	-126	NM_023133	20085	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	0.105000	0.641791	
mm_28581.1	chr3	93500228	93500428	-	1	NA	NA	NA	-20168	NM_016740	20195	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0.000000	0.398010	
mm_28807.1	chr3	96245212	96245412	-	1	NA	NA	NA	-145	NM_178212	319192	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	0.135000	0.661692	
mm_43887.1	chr5	143902155	143902355	+	1	NA	NA	NA	-7188	NM_001310772	66729	Mm.439817	NM_025732	ENSMUSG00000029607	Ankrd61	4921520G13Rik	ankyrin repeat domain 61	protein-coding	0.010000	0.572139	
mm_142092.1	chr17	35834278	35834478	-	1	NA	NA	NA	3923	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.005000	0.457711	
mm_24004.1	chr3	87357782	87357982	+	1	NA	NA	NA	1	NM_009690	11801	Mm.6676	NM_009690	ENSMUSG00000015854	Cd5l	1/6|AAC-11|AI047839|Api6|CT2|Pdp|Sp-alpha|mAIM	CD5 antigen-like	protein-coding	0.000000	0.522388	
mm_31503.1	chr4	53440432	53440632	+	1	NA	NA	NA	119	NM_133891	100434	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.175000	0.820896	
mm_15421.1	chr2	156863040	156863240	+	1	NA	NA	NA	18	NM_026124	67388	Mm.29264	NM_026124	ENSMUSG00000027637	1110008F13Rik	AI316789	RIKEN cDNA 1110008F13 gene	protein-coding	0.155000	0.771144	
mm_150603.1	chr19	40748753	40748953	+	1	NA	NA	NA	-82426	NM_172839	240665	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.040000	0.562189	
mm_34238.1	chr4	141150931	141151131	+	1	NA	NA	NA	3109	NM_172518	213499	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0.000000	0.447761	
mm_58592.1	chr7	5015429	5015629	+	1	NA	NA	NA	21	NM_025324	66056	Mm.19974	NM_025324	ENSMUSG00000051184	Zfp524	0610012F07Rik|2300009P13Rik|Znf524	zinc finger protein 524	protein-coding	0.125000	0.761194	
mm_37973.1	chr4	133545523	133545723	-	1	NA	NA	NA	404	NM_010948	18221	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nudC nuclear distribution protein	protein-coding	0.065000	0.587065	
mm_101892.1	chr11	49064104	49064304	-	1	NA	NA	NA	8	NM_001145164	100039796	Mm.482363	NM_001145164	ENSMUSG00000078921	Tgtp2	OTTMUSG00000005537|TGTP	T cell specific GTPase 2	protein-coding	0.015000	0.487562	
mm_37659.1	chr4	129032616	129032816	-	1	NA	NA	NA	-25555	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.010000	0.547264	
mm_23711.1	chr3	68869553	68869753	+	1	NA	NA	NA	67	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.145000	0.781095	
mm_5732.1	chr1	45332093	45332293	-	1	NA	NA	NA	20655	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.025000	0.472637	
mm_162221.1	chrX	143394117	143394317	-	1	NA	NA	NA	45	NM_031258	83453	Mm.157697	NM_031258	ENSMUSG00000031283	Chrdl1	CHL|CHL1|Nrln1|VOPT	chordin-like 1	protein-coding	0.060000	0.587065	-85(CCCTTTAAGACC,+,0.00),-84(CCTTTAAGACCC,+,0.00)
mm_54820.1	chr6	42351447	42351647	-	1	NA	NA	NA	1719	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.010000	0.592040	
mm_110728.1	chr12	69746240	69746440	-	1	NA	NA	NA	17604	NR_030450	751538		NR_030450	ENSMUSG00000076065	Mir681	Mirn681|mmu-mir-681	microRNA 681	ncRNA	0.035000	0.532338	
mm_144533.1	chr18	25234190	25234390	+	1	NA	NA	NA	65270	NM_001033532	225289	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	0.000000	0.462687	
mm_4759.1	chr1	182409073	182409273	+	1	NA	NA	NA	6	NM_173378	209456	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.135000	0.746269	
mm_131167.1	chr16	7039508	7039708	+	1	NA	NA	NA	-30227	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.025000	0.572139	-79(CACTTTAAGAGC,-,0.00),-78(ACTTTAAGAGCG,+,0.00)
mm_47979.1	chr5	135911213	135911413	-	1	NA	NA	NA	23328	NM_018871	22628	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.050000	0.597015	
mm_140506.1	chr17	5418603	5418803	-	1	NA	NA	NA	64	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.045000	0.611940	
mm_136414.1	chr16	93912110	93912310	-	1	NA	NA	NA	17357	NM_001165925	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.000000	0.477612	
mm_29591.1	chr3	119719992	119720192	-	1	NA	NA	NA	63296	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.010000	0.338308	
mm_38413.1	chr4	139130156	139130356	-	1	NA	NA	NA	781	NR_033745	433771	Mm.305990	NM_001163006	ENSMUSG00000050608	Minos1	2310028O11Rik	mitochondrial inner membrane organizing system 1	protein-coding	0.080000	0.587065	
mm_7885.1	chr1	133071663	133071863	-	1	NA	NA	NA	25751	NM_001099276	240752	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphoinositide-3-kinase, class 2, beta polypeptide	protein-coding	0.025000	0.562189	-41(CTCTCTAAGAGC,-,0.00)
mm_23682.1	chr3	68620498	68620698	+	1	NA	NA	NA	48230	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.015000	0.447761	
mm_47816.1	chr5	134222009	134222209	-	1	NA	NA	NA	7516	NM_001286037	17969	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.105000	0.686567	
mm_52598.1	chr6	117171382	117171582	+	1	NA	NA	NA	2947	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.025000	0.542289	
mm_30258.1	chr3	146683164	146683364	-	1	NA	NA	NA	-31947	NM_029144	75015	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.010000	0.398010	
mm_49870.1	chr6	38561133	38561333	+	1	NA	NA	NA	5510	NM_001331223	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.005000	0.263682	
mm_136493.1	chr16	96127613	96127813	-	1	NA	NA	NA	12	NM_008251	15312	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	0.130000	0.741294	
mm_22171.1	chr2	173148037	173148237	-	1	NA	NA	NA	-4936	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.025000	0.472637	57(ATCTTTTAAAGC,-,0.00),58(TCTTTTAAAGCC,+,0.00)
mm_127358.1	chr15	100665204	100665404	+	1	NA	NA	NA	4196	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.015000	0.467662	-3(CTGTCTAAAGGC,-,0.00)
mm_40771.1	chr5	67205715	67205915	+	1	NA	NA	NA	-54750	NM_001285452	67878	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	0.040000	0.393035	-34(GGCTATAAAAAT,-,0.00)
mm_111586.1	chr12	101913039	101913239	-	1	NA	NA	NA	32	NM_028446	109181	Mm.208618	NM_028446	ENSMUSG00000021188	Trip11	2610511G22Rik|3110031G15Rik|6030460N08Rik|AI450776|GMAP-210|TRIP230	thyroid hormone receptor interactor 11	protein-coding	0.085000	0.601990	
mm_19804.1	chr2	110305599	110305799	-	1	NA	NA	NA	26	NM_130452	170442	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	0.005000	0.492537	
mm_87136.1	chr10	34297470	34297670	+	1	NA	NA	NA	149	NM_030203	72480	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	0.050000	0.597015	
mm_74937.1	chr8	25796975	25797175	-	1	NA	NA	NA	-11399	NM_011485	20845	Mm.293314	NM_011485	ENSMUSG00000031574	Star	AV363654|D8Ertd419e|stARD1	steroidogenic acute regulatory protein	protein-coding	0.020000	0.512438	
mm_162771.1	chr10	67713210	67713410	+	1	NA	NA	NA	-164355	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.035000	0.527363	
mm_117209.1	chr13	64089055	64089255	-	1	NA	NA	NA	46	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.020000	0.592040	
mm_144508.1	chr18	24653808	24654008	+	1	NA	NA	NA	217	NM_026779	68591	Mm.28252	NM_026779	ENSMUSG00000039616	Mocos	1110018O12Rik|HMCS|MCS|MOS	molybdenum cofactor sulfurase	protein-coding	0.085000	0.716418	
mm_123771.1	chr14	70212331	70212531	-	1	NA	NA	NA	-4760	NM_011366	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.000000	0.467662	
mm_134012.1	chr16	4878243	4878443	-	1	NA	NA	NA	1508	NM_145359	207740	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.005000	0.562189	
mm_69911.1	chr7	141655292	141655492	-	1	NA	NA	NA	-73	NM_001330001	353328	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0.030000	0.611940	-34(CCCTATATAAGC,+,0.00),-34(CCCTATATAAGC,-,0.00)
mm_54829.1	chr6	42585771	42585971	-	1	NA	NA	NA	11501	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.000000	0.383085	
mm_62447.1	chr7	101383963	101384163	+	1	NA	NA	NA	-1463	NM_027180	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.005000	0.532338	
mm_18862.1	chr2	75704444	75704644	-	1	NA	NA	NA	119	NR_132727	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.060000	0.651741	
mm_23001.1	chr3	34052173	34052373	+	1	NA	NA	NA	29081	NM_001286972	67713	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.005000	0.253731	
mm_29303.1	chr3	107931773	107931973	-	1	NA	NA	NA	-128	NM_026672	68312	Mm.458189	NM_026672	ENSMUSG00000004035	Gstm7	0610005A07Rik|AI894236|Cd203c	glutathione S-transferase, mu 7	protein-coding	0.025000	0.572139	
mm_122646.1	chr14	51877535	51877735	-	1	NA	NA	NA	-7207	NM_001029990	52535	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding	0.000000	0.537313	
mm_119911.1	chr14	54952571	54952771	+	1	NA	NA	NA	-3529	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.015000	0.512438	
mm_109552.1	chr12	111713179	111713379	+	1	NA	NA	NA	10	NM_026511	68020	Mm.425762	NM_026511	ENSMUSG00000037787	Apopt1	1700081D05Rik|2810002N01Rik|Apop-1|Apop1	apoptogenic, mitochondrial 1	protein-coding	0.175000	0.721393	
mm_127382.1	chr15	100870884	100871084	+	1	NA	NA	NA	339	NM_001077499	20273	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	0.190000	0.805970	
mm_164007.1	chr14	67716082	67716282	+	1	NA	NA	NA	84	NM_001285933	105440	Mm.6720	NM_134073	ENSMUSG00000034327	Kctd9	-	potassium channel tetramerisation domain containing 9	protein-coding	0.105000	0.746269	
mm_111172.1	chr12	83632418	83632618	-	1	NA	NA	NA	284	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.095000	0.736318	
mm_155172.1	chrX	53434902	53435102	+	1	NA	NA	NA	84	NR_034074	69501	Mm.63828	NM_175147	ENSMUSG00000060967	Etd	1700030K02Rik	embryonic testis differentiation	ncRNA	0.020000	0.482587	
mm_82720.1	chr9	24765347	24765547	-	1	NA	NA	NA	8856	NM_020496	57246	Mm.31452	NM_020496	ENSMUSG00000031965	Tbx20	9430010M06Rik|AL022859|Tbx12	T-box 20	protein-coding	0.010000	0.388060	82(GCATTTAGGGAG,+,0.00)
mm_131771.1	chr16	22894261	22894461	+	1	NA	NA	NA	25	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.035000	0.587065	
mm_71330.1	chr8	45050827	45051027	+	1	NA	NA	NA	14491	NR_033588	434310	Mm.334512	NR_033588	ENSMUSG00000066158	AY512931	-	cDNA sequence AY512931	ncRNA	0.040000	0.517413	
mm_133283.1	chr16	77422832	77423032	+	1	NA	NA	NA	93604	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.005000	0.422886	
mm_78114.1	chr9	20642828	20643028	+	1	NA	NA	NA	-122	NM_013911	30843	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding	0.060000	0.606965	
mm_104542.1	chr11	96747311	96747511	-	1	NA	NA	NA	30144	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.015000	0.587065	
mm_14231.1	chr2	127587174	127587374	+	1	NA	NA	NA	-152	NM_029963	77721	Mm.274601	NM_029963	ENSMUSG00000027374	Mrps5	1620401I16Rik|AI850294	mitochondrial ribosomal protein S5	protein-coding	0.090000	0.666667	
mm_34700.1	chr4	152076161	152076361	+	1	NA	NA	NA	-10602	NR_104381	269608	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	0.020000	0.641791	
mm_45243.1	chr5	54045542	54045742	-	1	NA	NA	NA	47119	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.015000	0.507463	
mm_100909.1	chr11	6228993	6229193	-	1	NA	NA	NA	1152	NM_207242	237636	Mm.212492	NM_207242	ENSMUSG00000020447	Npc1l1	9130221N23Rik|Gm243	NPC1-like 1	protein-coding	0.025000	0.522388	
mm_109221.1	chr12	108792906	108793106	+	1	NA	NA	NA	-305	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.130000	0.736318	
mm_133818.1	chr16	95719759	95719959	+	1	NA	NA	NA	17452	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.005000	0.353234	
mm_59410.1	chr7	27120723	27120923	+	1	NA	NA	NA	868	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.015000	0.517413	
mm_92179.1	chr10	67912329	67912529	-	1	NA	NA	NA	233	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0.145000	0.746269	
mm_25399.1	chr3	107241770	107241970	+	1	NA	NA	NA	-2163	NM_001044382	246691	Mm.490697	NM_001044382	ENSMUSG00000070368	Prok1	EG-VEGF	prokineticin 1	protein-coding	0.025000	0.512438	
mm_31343.1	chr4	46489279	46489479	+	1	NA	NA	NA	50	NM_053179	94181	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.095000	0.671642	
mm_34553.1	chr4	149587189	149587389	+	1	NA	NA	NA	821	NM_023051	65945	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0.090000	0.631841	
mm_118781.1	chr14	24082013	24082213	+	1	NA	NA	NA	-6764	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.015000	0.527363	
mm_19420.1	chr2	91931393	91931593	-	1	NA	NA	NA	209	NM_001291481	17242	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.055000	0.582090	
mm_119725.1	chr14	53960890	53961090	+	1	NA	NA	NA	292939	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.492537	
mm_45204.1	chr5	52669603	52669803	-	1	NA	NA	NA	-2	NM_172490	211006	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	0.145000	0.706468	
mm_80805.1	chr9	96288276	96288476	+	1	NA	NA	NA	29128	NM_001184710	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.030000	0.492537	
mm_138653.1	chr17	35867684	35867884	+	1	NA	NA	NA	1169	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.015000	0.562189	
mm_27806.1	chr3	75956728	75956928	-	1	NA	NA	NA	121	NM_175193	73124	Mm.249232	NM_175193	ENSMUSG00000034109	Golim4	3110027H23Rik|GIMPC|GPP130|Golph4|P138	golgi integral membrane protein 4	protein-coding	0.060000	0.636816	
mm_129949.1	chr15	84987927	84988127	-	1	NA	NA	NA	-56	NM_001033273	223739	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.135000	0.746269	
mm_46177.1	chr5	97094012	97094212	-	1	NA	NA	NA	17484	NM_198422	231474	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.005000	0.358209	
mm_89455.1	chr10	93160884	93161084	+	1	NA	NA	NA	108	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.165000	0.800995	
mm_5412.1	chr1	33814445	33814645	-	1	NA	NA	NA	50	NM_133817	98403	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	0.150000	0.736318	
mm_40503.1	chr5	57728140	57728340	+	1	NA	NA	NA	10159	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.010000	0.422886	60(ACCTATTTAAGG,-,0.00)
mm_66155.1	chr7	31150926	31151126	-	1	NA	NA	NA	24	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.145000	0.796020	
mm_42327.1	chr5	114901441	114901641	+	1	NA	NA	NA	4607	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.025000	0.542289	
mm_73580.1	chr8	109830382	109830582	+	1	NA	NA	NA	-8830	NR_028532	100217432		NR_028532		Snord71	MBII-239	small nucleolar RNA, C/D box 71	snoRNA	0.010000	0.368159	-75(TCCTTTAGAGAG,+,0.00)
mm_61294.1	chr7	67655328	67655528	+	1	NA	NA	NA	8018	NM_025905	67009	Mm.249356	NM_025905	ENSMUSG00000030555	Ttc23	1600012K10Rik	tetratricopeptide repeat domain 23	protein-coding	0.005000	0.512438	
mm_13629.1	chr2	113641220	113641420	+	1	NA	NA	NA	-43770	NM_001287818	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.000000	0.283582	
mm_9758.1	chr1	180848554	180848754	-	1	NA	NA	NA	-2497	NM_145943	208768	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.020000	0.547264	
mm_124558.1	chr14	122983097	122983297	-	1	NA	NA	NA	64	NM_028651	70551	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	0.125000	0.771144	
mm_73628.1	chr8	110715024	110715224	+	1	NA	NA	NA	-6352	NM_198625	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.025000	0.552239	
mm_10560.1	chr2	18027641	18027841	+	1	NA	NA	NA	492	NR_028378	100034739	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	0.080000	0.661692	
mm_108314.1	chr12	79570130	79570330	+	1	NA	NA	NA	272879	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.005000	0.393035	
mm_141934.1	chr17	35046408	35046608	-	1	NA	NA	NA	114	NM_013600	17687	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	0.075000	0.646766	
mm_154668.1	chrX	7881990	7882190	+	1	NA	NA	NA	-2154	NM_001083937	22232	Mm.214976	NM_078484	ENSMUSG00000031156	Slc35a2	AI327289|Had-1|Had1|Sfc8|UGT|Ugalt	solute carrier family 35 (UDP-galactose transporter), member A2	protein-coding	0.020000	0.527363	
mm_36467.1	chr4	82687722	82687922	-	1	NA	NA	NA	171839	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0.000000	0.313433	
mm_148362.1	chr18	85698023	85698223	-	1	NA	NA	NA	-696829	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.075000	0.666667	
mm_79115.1	chr9	46273075	46273275	+	1	NA	NA	NA	111	NM_011752	22687	Mm.17519	NM_011752	ENSMUSG00000032078	Zpr1	AI303781|Zfp259|Znf259	ZPR1 zinc finger	protein-coding	0.110000	0.721393	-73(GCCTCTTTAAGA,-,0.00)
mm_79815.1	chr9	64281503	64281703	+	1	NA	NA	NA	18	NM_001324557	66131	Mm.196219	NM_025372	ENSMUSG00000032397	Tipin	1110005A05Rik|1110018P21Rik	timeless interacting protein	protein-coding	0.110000	0.646766	
mm_131356.1	chr16	13729699	13729899	+	1	NA	NA	NA	-37	NR_040574	76684	Mm.491043	NR_040574		Pla2g10os	1810007I06Rik	phospholipase A2, group X, opposite strand	ncRNA	0.015000	0.577114	
mm_38677.1	chr4	144981172	144981372	-	1	NA	NA	NA	88135	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.020000	0.577114	
mm_122329.1	chr14	37102144	37102344	-	1	NA	NA	NA	-3933	NM_130878	170677	Mm.156506	NM_130878	ENSMUSG00000021803	Cdhr1	Pcdh21|Prcad|mKIAA1775	cadherin-related family member 1	protein-coding	0.005000	0.452736	
mm_137720.1	chr17	29114072	29114272	+	1	NA	NA	NA	20403	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.025000	0.587065	
mm_75242.1	chr8	39639112	39639312	-	1	NA	NA	NA	3466	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.005000	0.507463	
mm_83709.1	chr9	50728161	50728361	-	1	NA	NA	NA	-277	NM_178118	330938	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	0.095000	0.601990	
mm_162800.1	chr10	77008304	77008504	+	1	NA	NA	NA	-3591	NR_045882	100038479	Mm.387034	NR_045882	ENSMUSG00000074919	Gm10787	ENSMUSG00000074919	predicted gene 10787	ncRNA	0.025000	0.572139	
mm_32007.1	chr4	94642319	94642519	+	1	NA	NA	NA	7725	NM_175305	100061	Mm.26760	NM_175305	ENSMUSG00000049799	Lrrc19	9130022A01Rik|AI314124|AL022954|AW261791	leucine rich repeat containing 19	protein-coding	0.005000	0.258706	
mm_62956.1	chr7	119640201	119640401	+	1	NA	NA	NA	22473	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.005000	0.427861	
mm_9189.1	chr1	171135969	171136169	-	1	NA	NA	NA	14408	NM_001081275	75472	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.025000	0.502488	
mm_4805.1	chr1	185282964	185283164	+	1	NA	NA	NA	-30255	NR_029580	387189		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	0.030000	0.562189	
mm_27379.1	chr3	50443485	50443685	-	1	NA	NA	NA	28	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.035000	0.552239	-32(GCTTAAATACGG,+,0.00)
mm_145821.1	chr18	65431976	65432176	+	1	NA	NA	NA	1079	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.005000	0.288557	
mm_24081.1	chr3	87952444	87952644	+	1	NA	NA	NA	3851	NM_007759	12904	Mm.4757	NM_007759	ENSMUSG00000004885	Crabp2	AI893628|Crabp-2|CrabpII	cellular retinoic acid binding protein II	protein-coding	0.010000	0.577114	
mm_10587.1	chr2	18192795	18192995	+	1	NA	NA	NA	128310	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.005000	0.388060	
mm_146297.1	chr18	80186127	80186327	+	1	NA	NA	NA	-12	NR_131039	105246506	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	0.010000	0.442786	
mm_14858.1	chr2	148750264	148750464	+	1	NA	NA	NA	3	NM_177655	228756	Mm.189390	NM_177655	ENSMUSG00000055177	Cstl1	RCET1|RCET2|RCET3	cystatin-like 1	protein-coding	0.000000	0.542289	80(GACTTGATAAGG,-,0.00)
mm_35710.1	chr4	44168391	44168591	-	1	NA	NA	NA	-208	NM_001038993	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.060000	0.577114	
mm_13320.1	chr2	102691229	102691429	+	1	NA	NA	NA	-15109	NM_011393	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.010000	0.492537	
mm_42704.1	chr5	120116403	120116603	+	1	NA	NA	NA	-10	NM_028762	74111	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	0.100000	0.656716	
mm_43214.1	chr5	129584103	129584303	+	1	NA	NA	NA	34	NM_011846	23948	Mm.42047	NM_011846	ENSMUSG00000029436	Mmp17	MT4-MMP|MT4MMP|MTMMP4	matrix metallopeptidase 17	protein-coding	0.135000	0.746269	-95(GCCCCTTTAAGG,-,0.00),-94(CCCCTTTAAGGG,-,0.00),-93(CCCTTTAAGGGA,+,0.00),-92(CCTTTAAGGGAG,+,0.00)
mm_68269.1	chr7	105595525	105595725	-	1	NA	NA	NA	4491	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.030000	0.502488	
mm_128874.1	chr15	73038548	73038748	-	1	NA	NA	NA	17164	NM_029640	76510	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.030000	0.542289	
mm_68433.1	chr7	109865545	109865745	-	1	NA	NA	NA	34	NM_020052	56788	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	0.155000	0.791045	
mm_60749.1	chr7	45481659	45481859	+	1	NA	NA	NA	-4503	NM_001290996	56734	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0.035000	0.547264	
mm_116583.1	chr13	47106058	47106258	-	1	NA	NA	NA	63	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.155000	0.686567	
mm_21916.1	chr2	166713693	166713893	-	1	NA	NA	NA	39	NM_177782	277360	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.140000	0.771144	
mm_57293.1	chr6	124433690	124433890	-	1	NA	NA	NA	-18723	NM_001277805	19305	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1R|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0.020000	0.567164	
mm_130643.1	chr15	100591587	100591787	-	1	NA	NA	NA	-5322	NM_010127	19009	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0.010000	0.427861	
mm_153815.1	chr19	46148152	46148352	-	1	NA	NA	NA	73	NM_008852	18742	Mm.6255	NM_008852	ENSMUSG00000025229	Pitx3	Ptx3|ak	paired-like homeodomain transcription factor 3	protein-coding	0.070000	0.736318	
mm_25372.1	chr3	107183042	107183242	+	1	NA	NA	NA	-1	NM_001081140	242151	Mm.245155	NM_001081140	ENSMUSG00000042861	Kcna10	Gm1962|Kcna8|Kv1.8	potassium voltage-gated channel, shaker-related subfamily, member 10	protein-coding	0.010000	0.572139	
mm_69798.1	chr7	141171071	141171271	-	1	NA	NA	NA	1680	NM_001172100	107702	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.000000	0.467662	
mm_151188.1	chr19	53421533	53421733	+	1	NA	NA	NA	-31060	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	0.020000	0.467662	-69(CTCCTGAAAAGG,-,0.00)
mm_34701.1	chr4	152086762	152086962	+	1	NA	NA	NA	-1	NR_104381	269608	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	0.190000	0.855721	
mm_41783.1	chr5	103722674	103722874	+	1	NA	NA	NA	-31388	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.005000	0.398010	
mm_120818.1	chr14	75131950	75132150	+	1	NA	NA	NA	927	NM_001247984	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.010000	0.363184	
mm_97892.1	chr11	83302622	83302822	+	1	NA	NA	NA	25	NM_001035854	71770	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979	adaptor-related protein complex 2, beta 1 subunit	protein-coding	0.090000	0.611940	
mm_74522.1	chr8	9393946	9394146	-	1	NA	NA	NA	249377	NR_073360	74688	Mm.159298	NR_073360	ENSMUSG00000109215	4930453L07Rik	-	RIKEN cDNA 4930453L07 gene	ncRNA	0.000000	0.233831	
mm_3135.1	chr1	135131190	135131390	+	1	NA	NA	NA	1285	NM_007955	13924	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP|mOST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	0.020000	0.616915	
mm_172751.1	chr8	84854507	84854707	-	1	NA	NA	NA	-2379	NM_025648	66590	Mm.292517	NM_025648	ENSMUSG00000003808	Farsa	0610012A19Rik|Farsla	phenylalanyl-tRNA synthetase, alpha subunit	protein-coding	0.010000	0.497512	
mm_138506.1	chr17	35235774	35235974	+	1	NA	NA	NA	-59	NM_010909	18038	Mm.300795	NM_010909	ENSMUSG00000042419	Nfkbil1	Def-7|IKBL	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1	protein-coding	0.080000	0.572139	
mm_149851.1	chr19	25060931	25061131	+	1	NA	NA	NA	61502	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.030000	0.557214	
mm_3169.1	chr1	135686818	135687018	+	1	NA	NA	NA	-42279	NM_007791	13007	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.025000	0.517413	
mm_171961.1	chr5	83389630	83389830	-	1	NA	NA	NA	-34535	NM_153801	243078	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding	0.050000	0.577114	
mm_83969.1	chr9	57158178	57158378	-	1	NA	NA	NA	21	NM_025417	66199	Mm.41687	NM_025417	ENSMUSG00000032299	Commd4	1110039H05Rik	COMM domain containing 4	protein-coding	0.035000	0.532338	
mm_3171.1	chr1	135687012	135687212	+	1	NA	NA	NA	-42085	NM_007791	13007	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.030000	0.557214	-17(CCCTTTATGCCA,+,0.00)
mm_141403.1	chr17	29342758	29342958	-	1	NA	NA	NA	5046	NM_019880	56462	Mm.285322	NM_019880	ENSMUSG00000024012	Mtch1	2310034O17Rik|AI255158|AU018396|C77849|PSAP	mitochondrial carrier 1	protein-coding	0.015000	0.606965	
mm_32448.1	chr4	107347331	107347531	+	1	NA	NA	NA	-20353	NM_028355	72787	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0.010000	0.547264	
mm_73787.1	chr8	117157904	117158104	+	1	NA	NA	NA	-131	NM_001081151	209239	Mm.132992	NM_001081151	ENSMUSG00000052557	Gan	A330045G18|gigaxonin	giant axonal neuropathy	protein-coding	0.165000	0.731343	-58(GCTCCTTAAAGG,-,0.00),-57(CTCCTTAAAGGC,-,0.00),-55(CCTTAAAGGCGC,+,0.00)
mm_72854.1	chr8	88330958	88331158	+	1	NA	NA	NA	31133	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.000000	0.368159	
mm_151022.1	chr19	46863790	46863990	+	1	NA	NA	NA	98461	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.015000	0.427861	-14(GCCTCTTTAAGA,-,0.00)
mm_78275.1	chr9	22099179	22099379	+	1	NA	NA	NA	26	NM_009922	12797	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	0.035000	0.601990	
mm_98462.1	chr11	94948241	94948441	+	1	NA	NA	NA	12117	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.015000	0.537313	
mm_99673.1	chr11	105974572	105974772	+	1	NA	NA	NA	-536	NM_009598	11421	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0.005000	0.597015	
mm_98616.1	chr11	95843539	95843739	+	1	NA	NA	NA	394	NM_001284397	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.020000	0.567164	
mm_144220.1	chr18	9781746	9781946	+	1	NA	NA	NA	74198	NM_130449	140792	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.005000	0.373134	61(ACTTTTAAACCC,+,0.00),70(CCCTTTTAAAGT,-,0.00),71(CCTTTTAAAGTA,+,0.00)
mm_22151.1	chr2	172401030	172401230	-	1	NA	NA	NA	7336	NM_001276423	320664	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.035000	0.472637	
mm_66577.1	chr7	45336354	45336554	-	1	NA	NA	NA	1185	NM_010473	15464	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.005000	0.472637	
mm_167223.1	chr8	12385708	12385908	+	1	NA	NA	NA	37	NR_027975	434280	Mm.447484	NM_001013812	ENSMUSG00000047935	Gm5607	EG434280	predicted gene 5607	ncRNA	0.125000	0.636816	
mm_16211.1	chr2	173073073	173073273	+	1	NA	NA	NA	46352	NM_001081387	664799	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris|OTTMUSG00000016680	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.010000	0.497512	
mm_70223.1	chr7	145207978	145208178	-	1	NA	NA	NA	41	NR_033626	100040049	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.015000	0.532338	
mm_32034.1	chr4	95637316	95637516	+	1	NA	NA	NA	57995	NM_029347	75578	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.005000	0.308458	
mm_19660.1	chr2	103073371	103073571	-	1	NA	NA	NA	42	NM_175094	27402	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0.075000	0.651741	
mm_9965.1	chr1	191177039	191177239	-	1	NA	NA	NA	6194	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.015000	0.447761	
mm_135264.1	chr16	38294706	38294906	-	1	NA	NA	NA	18	NM_010936	18171	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0.015000	0.497512	
mm_35677.1	chr4	43656354	43656554	-	1	NA	NA	NA	-9	NM_026871	68917	Mm.25285	NM_026871	ENSMUSG00000028470	Hint2	1190005L05Rik	histidine triad nucleotide binding protein 2	protein-coding	0.085000	0.691542	
mm_105377.1	chr11	103267257	103267457	-	1	NA	NA	NA	44	NM_016896	53859	Mm.158981	NM_016896	ENSMUSG00000020941	Map3k14	Nik|aly	mitogen-activated protein kinase kinase kinase 14	protein-coding	0.120000	0.736318	
mm_37253.1	chr4	118291272	118291472	-	1	NA	NA	NA	25	NM_011213	19268	Mm.29855	NM_011213	ENSMUSG00000033295	Ptprf	AA591035|LAR|LARS|RPTP-LAR	protein tyrosine phosphatase, receptor type, F	protein-coding	0.180000	0.835821	
mm_100085.1	chr11	115475667	115475867	+	1	NA	NA	NA	90	NM_177778	276905	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0.050000	0.606965	
mm_3611.1	chr1	151871993	151872193	+	1	NA	NA	NA	116719	NM_001311166	66967	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0.015000	0.472637	
mm_128052.1	chr15	25826363	25826563	-	1	NA	NA	NA	-16835	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.025000	0.462687	-34(GTATATAAAAAG,-,0.00)
mm_33790.1	chr4	134923945	134924145	+	1	NA	NA	NA	420	NM_023665	27981	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.150000	0.711443	
mm_84470.1	chr9	66593027	66593227	-	1	NA	NA	NA	-12	NM_001302122	235441	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.090000	0.711443	
mm_41830.1	chr5	104114060	104114260	+	1	NA	NA	NA	-72	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding	0.015000	0.477612	-61(CTCTTTAGAGCA,+,0.00)
mm_65592.1	chr7	27329381	27329581	-	1	NA	NA	NA	4167	NM_001113549	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.090000	0.646766	-52(CCTTAAAAATGC,+,0.00)
mm_168239.1	chr10	81818843	81819043	-	1	NA	NA	NA	6757	NM_001142963	100233208	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	ENSMUSG00000074860	predicted gene 10778	protein-coding	0.040000	0.427861	
mm_151575.1	chr19	61050793	61050993	+	1	NA	NA	NA	89947	NR_131956	414758	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0.015000	0.368159	
mm_15691.1	chr2	163658503	163658703	+	1	NA	NA	NA	145	NM_001164053	18769	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.120000	0.686567	
mm_152292.1	chr19	9002857	9003057	-	1	NA	NA	NA	13673	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.000000	0.487562	
mm_115342.1	chr13	112508097	112508297	+	1	NA	NA	NA	44127	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.010000	0.343284	
mm_51130.1	chr6	68437335	68437535	+	1	NA	NA	NA	-871736	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.000000	0.497512	
mm_40297.1	chr5	43515826	43516026	+	1	NA	NA	NA	357	NM_001135172	109323	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	0.000000	0.412935	
mm_13561.1	chr2	112265689	112265889	+	1	NA	NA	NA	-525	NM_133649	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.160000	0.776119	
mm_127725.1	chr15	103240317	103240517	+	1	NA	NA	NA	-15	NR_002885	654467	Mm.432031	NR_002885		Gm10052	ENSMUSG00000058922|XM_001481145	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.070000	0.522388	-18(CGGGATAAAAGG,-,0.00)
mm_168939.1	chr12	69370814	69371014	-	1	NA	NA	NA	-1236	NM_007481	11845	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.010000	0.467662	
mm_77737.1	chr8	126937254	126937454	-	1	NA	NA	NA	8567	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.005000	0.437811	
mm_37909.1	chr4	132757030	132757230	-	1	NA	NA	NA	41	NM_133888	100340	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	0.075000	0.636816	
mm_32030.1	chr4	95557419	95557619	+	1	NA	NA	NA	12	NM_001113412	75578	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.035000	0.577114	
mm_86367.1	chr9	123792390	123792590	-	1	NA	NA	NA	-13987	NM_030712	80901	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.010000	0.472637	
mm_43727.1	chr5	139547876	139548076	+	1	NA	NA	NA	4078	NM_013702	22255	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	0.025000	0.487562	-64(ATTTTTAAAGGC,+,0.00)
mm_96383.1	chr11	67243356	67243556	+	1	NA	NA	NA	5644	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.010000	0.467662	
mm_133399.1	chr16	84793467	84793667	+	1	NA	NA	NA	19444	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.040000	0.522388	
mm_150427.1	chr19	37436640	37436840	+	1	NA	NA	NA	1899	NM_008245	15242	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0.065000	0.631841	
mm_45181.1	chr5	51772616	51772816	-	1	NA	NA	NA	-204991	NR_132764	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.000000	0.452736	
mm_80272.1	chr9	72985299	72985499	+	1	NA	NA	NA	-23	NM_001198789	546143	Mm.260946	NM_001198789	ENSMUSG00000086158	Ccpg1os	EG546143|Gm5918	cell cycle progression 1, opposite strand	protein-coding	0.095000	0.661692	
mm_161154.1	chr13	23842148	23842348	+	1	NA	NA	NA	2814	NM_134069	105355	Mm.27038	NM_134069	ENSMUSG00000036083	Slc17a3	AW261723|Npt4	solute carrier family 17 (sodium phosphate), member 3	protein-coding	0.000000	0.442786	
mm_5558.1	chr1	38777488	38777688	-	1	NA	NA	NA	43627	NM_001029878	381338	Mm.487137	NM_028403	ENSMUSG00000048814	Lonrf2	2900060P06Rik|AI851349	LON peptidase N-terminal domain and ring finger 2	protein-coding	0.010000	0.502488	
mm_53400.1	chr6	129591701	129591901	+	1	NA	NA	NA	-10	NM_010654	16643	Mm.391515	NM_010654	ENSMUSG00000030165	Klrd1	CD94	killer cell lectin-like receptor, subfamily D, member 1	protein-coding	0.010000	0.452736	-82(CTCTTTTAATGC,-,0.00),-23(TTCTTTAAAAAG,-,0.00),-21(CTTTAAAAAGCA,+,0.00)
mm_106736.1	chr12	3897290	3897490	+	1	NA	NA	NA	5646	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.020000	0.537313	
mm_108088.1	chr12	74284191	74284391	+	1	NA	NA	NA	15	NR_030735	74284	Mm.287421	NR_030733	ENSMUSG00000071265	1700086L19Rik	1700006L05Rik|AU016007	RIKEN cDNA 1700086L19 gene	ncRNA	0.120000	0.676617	-43(GCCTAGAAAAGC,-,0.00)
mm_172936.1	chr9	78480755	78480955	-	1	NA	NA	NA	869	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.055000	0.592040	
mm_103678.1	chr11	79243362	79243562	-	1	NA	NA	NA	-438	NM_001042565	78889	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.040000	0.522388	
mm_143803.1	chr17	83514198	83514398	-	1	NA	NA	NA	35	NM_009187	20463	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.070000	0.592040	-32(CCTTTTCTAGGG,+,0.00)
mm_76437.1	chr8	84986083	84986283	-	1	NA	NA	NA	-4412	NM_133255	170833	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	0.150000	0.686567	
mm_47913.1	chr5	134966386	134966586	-	1	NA	NA	NA	-19552	NM_009903	12740	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	0.030000	0.537313	-88(GTCTTTTAAGGG,-,0.00),-87(TCTTTTAAGGGG,+,0.00)
mm_76853.1	chr8	105349116	105349316	-	1	NA	NA	NA	958	NM_001081332	277973	Mm.334766	NM_001081332	ENSMUSG00000014786	Slc9a5	Gm696	solute carrier family 9 (sodium/hydrogen exchanger), member 5	protein-coding	0.070000	0.651741	
mm_114384.1	chr13	63246743	63246943	+	1	NA	NA	NA	6814	NR_110521	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.025000	0.487562	
mm_153547.1	chr19	42086187	42086387	-	1	NA	NA	NA	83	NM_198108	226123	Mm.259441	NM_198108	ENSMUSG00000049670	Morn4	-	MORN repeat containing 4	protein-coding	0.065000	0.646766	
mm_124266.1	chr14	102980420	102980620	-	1	NA	NA	NA	2112	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.015000	0.442786	
mm_79064.1	chr9	46230319	46230519	+	1	NA	NA	NA	1789	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.035000	0.547264	
mm_97106.1	chr11	74619595	74619795	+	1	NA	NA	NA	90	NM_001013784	432582	Mm.274369	NM_001013784	ENSMUSG00000069814	Ccdc92b	E130309D14Rik	coiled-coil domain containing 92B	protein-coding	0.095000	0.701493	
mm_140646.1	chr17	12688462	12688662	-	1	NA	NA	NA	-12724	NM_009202	20517	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.035000	0.577114	
mm_110594.1	chr12	56534923	56535123	-	1	NA	NA	NA	1885	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.070000	0.597015	
mm_56577.1	chr6	106748876	106749076	-	1	NA	NA	NA	61	NM_008370	16192	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	0.015000	0.442786	
mm_109245.1	chr12	109452741	109452941	+	1	NA	NA	NA	18	NR_033813	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.025000	0.601990	
mm_42770.1	chr5	121283562	121283762	+	1	NA	NA	NA	63443	NM_181421	269700	Mm.184589	NM_181421	ENSMUSG00000042744	Gm15800	A130010L24|AU042671|BC019639|EG545802|OTTMUSG00000026283|mKIAA0614	predicted gene 15800	protein-coding	0.005000	0.532338	
mm_170021.1	chr17	21474635	21474835	+	1	NA	NA	NA	-14253	NM_013843	24132	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	0.030000	0.572139	
mm_43053.1	chr5	124175302	124175502	+	1	NA	NA	NA	11780	NM_001289472	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.015000	0.547264	
mm_162264.1	chrY	3771572	3771772	+	1	NA	NA	NA	-1	NM_001270516	100862398	Mm.4711	NM_001270516	ENSMUSG00000095948	Gm21708	-	predicted gene, 21708	protein-coding	0.035000	0.432836	36(ATCCATTAAAGC,-,0.00)
mm_57239.1	chr6	123282944	123283144	-	1	NA	NA	NA	6827	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.010000	0.462687	
mm_53601.1	chr6	138147629	138147829	+	1	NA	NA	NA	6135	NM_001347489	56615	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.020000	0.482587	
mm_100579.1	chr11	120784165	120784365	+	1	NA	NA	NA	-7	NM_001346709	209318	Mm.30195	NM_145370	ENSMUSG00000025156	Gps1	Cops1|Csn1|R75577|Sgn1	G protein pathway suppressor 1	protein-coding	0.140000	0.731343	-55(GCCCCTTTAAGA,-,0.00),-52(CCTTTAAGAGTG,+,0.00)
mm_12965.1	chr2	90677122	90677322	+	1	NA	NA	NA	7	NM_021512	59015	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.035000	0.522388	
mm_96166.1	chr11	61488055	61488255	+	1	NA	NA	NA	2711	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.015000	0.557214	
mm_14487.1	chr2	131856448	131856648	+	1	NA	NA	NA	3199	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	0.015000	0.492537	
mm_45220.1	chr5	53213331	53213531	-	1	NA	NA	NA	21	NM_172710	231238	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0.160000	0.840796	
mm_143590.1	chr17	74459098	74459298	-	1	NA	NA	NA	-90	NM_001033367	268973	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.010000	0.427861	
mm_4509.1	chr1	174172802	174173002	+	1	NA	NA	NA	126	NM_011465	20739	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding	0.005000	0.393035	
mm_3933.1	chr1	163762041	163762241	+	1	NA	NA	NA	-17442	NM_001305643	16579	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	0.005000	0.388060	
mm_156788.1	chrX	162566714	162566914	+	1	NA	NA	NA	76844	NM_001290633	194590	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	0.040000	0.502488	
mm_128787.1	chr15	66803965	66804165	-	1	NA	NA	NA	27764	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.020000	0.502488	
mm_126141.1	chr15	78348186	78348386	+	1	NA	NA	NA	-313	NR_106137	102465776		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0.000000	0.567164	
mm_79316.1	chr9	52069650	52069850	+	1	NA	NA	NA	-21045	NR_023357	629557	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.020000	0.477612	
mm_49338.1	chr6	21344437	21344637	+	1	NA	NA	NA	128428	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.005000	0.268657	-71(CCATTTAAAAAC,+,0.00)
mm_51126.1	chr6	68256280	68256480	+	1	NA	NA	NA	-690681	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.010000	0.472637	
mm_4393.1	chr1	172341262	172341462	+	1	NA	NA	NA	152	NM_001039484	16513	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	0.085000	0.656716	
mm_77614.1	chr8	123894652	123894852	-	1	NA	NA	NA	23	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.035000	0.606965	-35(GACTATATAAAA,-,0.00)
mm_82228.1	chr9	3027382	3027582	-	1	NA	NA	NA	11261	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.030000	0.368159	
mm_19508.1	chr2	93849851	93850051	-	1	NA	NA	NA	-8	NM_001290782	329470	Mm.486910	NM_183220	ENSMUSG00000040272	Accs	2610203E10Rik|Phacs	1-aminocyclopropane-1-carboxylate synthase (non-functional)	protein-coding	0.015000	0.527363	
mm_146044.1	chr18	69593166	69593366	+	1	NA	NA	NA	247545	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.090000	0.606965	
mm_43681.1	chr5	138804627	138804827	+	1	NA	NA	NA	-15353	NM_001195128	384244	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0.005000	0.383085	
mm_72922.1	chr8	91082156	91082356	+	1	NA	NA	NA	12199	NM_001282000	19651	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	retinoblastoma-like 2	protein-coding	0.010000	0.422886	
mm_55425.1	chr6	65144739	65144939	-	1	NA	NA	NA	-109	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.015000	0.467662	49(GCTTTTAGGTGG,+,0.00)
mm_142448.1	chr17	45592475	45592675	-	1	NA	NA	NA	-182	NM_022880	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.025000	0.527363	51(GCTTATAAACTG,+,0.00)
mm_147387.1	chr18	44088394	44088594	-	1	NA	NA	NA	-16029	NM_030061	78242	Mm.99782	NM_030061	ENSMUSG00000061144	Spink12	9230117E20Rik	serine peptidase inhibitor, Kazal type 12	protein-coding	0.025000	0.308458	
mm_132528.1	chr16	37834463	37834663	+	1	NA	NA	NA	-33837	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.010000	0.293532	
mm_13778.1	chr2	118747164	118747364	+	1	NA	NA	NA	1506	NM_001301269	100043272	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik|ENSMUSG00000074918	InaF motif containing 2	protein-coding	0.005000	0.442786	
mm_24953.1	chr3	96635727	96635927	+	1	NA	NA	NA	-20	NM_001162388	18632	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	0.115000	0.706468	
mm_64829.1	chr7	12807212	12807412	-	1	NA	NA	NA	11548	NM_026046	67230	Mm.333574	NM_026046	ENSMUSG00000057894	Zfp329	2810439M05Rik|4632409L22Rik|ZNF329	zinc finger protein 329	protein-coding	0.010000	0.308458	48(CTTTTTAGACTC,+,0.00)
mm_13368.1	chr2	103566214	103566414	+	1	NA	NA	NA	4	NM_178890	99382	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.095000	0.626866	
mm_26198.1	chr3	138526398	138526598	+	1	NA	NA	NA	77	NR_035481	100316706		NR_035481	ENSMUSG00000088373	Mir1956	mir-1956|mmu-mir-1956	microRNA 1956	ncRNA	0.050000	0.562189	
mm_167385.1	chr8	94696089	94696289	-	1	NA	NA	NA	53	NM_026385	67801	Mm.279977	NM_026385	ENSMUSG00000031775	Pllp	0610010I06Rik|AV001002|Plapi|Tm4sf11	plasma membrane proteolipid	protein-coding	0.125000	0.696517	
mm_122590.1	chr14	50897390	50897590	-	1	NA	NA	NA	-4235	NM_001166651	546611	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	0.025000	0.532338	
mm_148853.1	chr19	6389699	6389899	+	1	NA	NA	NA	5391	NM_011224	19309	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0.055000	0.597015	
mm_78040.1	chr9	14282272	14282472	+	1	NA	NA	NA	6071	NM_030261	75747	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.000000	0.348259	-59(TTTTTAAAAGTC,+,0.00)
mm_25361.1	chr3	107091336	107091536	+	1	NA	NA	NA	-10131	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.010000	0.482587	
mm_69523.1	chr7	135651737	135651937	-	1	NA	NA	NA	-62	NM_001316681	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.020000	0.646766	
mm_31020.1	chr4	40726728	40726928	+	1	NA	NA	NA	3898	NM_001164672	15502	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0.000000	0.338308	
mm_158748.1	chrX	164980194	164980394	-	1	NA	NA	NA	81	NM_001290523	76763	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	0.050000	0.606965	
mm_149346.1	chr19	10859687	10859887	+	1	NA	NA	NA	9992	NM_133804	98170	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.025000	0.537313	
mm_96116.1	chr11	60704598	60704798	+	1	NA	NA	NA	5008	NM_008502	16897	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	lethal giant larvae homolog 1 (Drosophila)	protein-coding	0.030000	0.562189	68(CCTTTACTAGCA,+,0.00)
mm_172233.1	chr6	67839669	67839869	+	1	NA	NA	NA	-274070	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.005000	0.442786	
mm_11825.1	chr2	44927341	44927541	+	1	NA	NA	NA	-65819	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.115000	0.706468	
mm_94627.1	chr11	16805542	16805742	+	1	NA	NA	NA	53439	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.005000	0.388060	20(GACTATTAATAG,-,0.00)
mm_83335.1	chr9	44256834	44257034	-	1	NA	NA	NA	-5470	NM_133226	170761	Mm.29872	NM_133226	ENSMUSG00000032105	Pdzd3	NaPi-Cap2|Pdzk2	PDZ domain containing 3	protein-coding	0.050000	0.611940	
mm_89229.1	chr10	87521866	87522066	+	1	NA	NA	NA	171	NM_008777	18478	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0.010000	0.522388	
mm_160606.1	chr9	78313802	78314002	-	1	NA	NA	NA	146	NM_001111286	18379	Mm.335311	NM_001111286	ENSMUSG00000066463	Omt2a	OM2a	oocyte maturation, alpha	protein-coding	0.010000	0.492537	
mm_473.1	chr1	36471498	36471698	+	1	NA	NA	NA	1	NM_033570	94220	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	0.155000	0.791045	
mm_78943.1	chr9	45138360	45138560	+	1	NA	NA	NA	-582	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.090000	0.636816	
mm_29923.1	chr3	131490636	131490836	-	1	NA	NA	NA	-74032	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.065000	0.626866	
mm_87456.1	chr10	51484213	51484413	+	1	NA	NA	NA	3701	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.000000	0.492537	
mm_152928.1	chr19	28146251	28146451	-	1	NA	NA	NA	-135185	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.025000	0.427861	
mm_105469.1	chr11	105455212	105455412	-	1	NA	NA	NA	1423	NM_172568	632687	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|OTTMUSG00000002847|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.015000	0.452736	
mm_75341.1	chr8	43306861	43307061	-	1	NA	NA	NA	48	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.035000	0.517413	
mm_94700.1	chr11	20201327	20201527	+	1	NA	NA	NA	-175	NM_008996	19324	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0.085000	0.641791	
mm_73911.1	chr8	119612617	119612817	+	1	NA	NA	NA	-30	NM_029428	75773	Mm.159566	NM_029428	ENSMUSG00000024266	Adad2	4930403J07Rik	adenosine deaminase domain containing 2	protein-coding	0.070000	0.606965	
mm_82142.1	chr9	123769785	123769985	+	1	NA	NA	NA	2674	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.010000	0.422886	
mm_129865.1	chr15	83367145	83367345	-	1	NA	NA	NA	52	NR_027980	69291	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0.090000	0.666667	
mm_722.1	chr1	42701067	42701267	+	1	NA	NA	NA	831	NR_027891	73100	Mm.467885	NR_027891		2900092D14Rik	-	RIKEN cDNA 2900092D14 gene	ncRNA	0.000000	0.398010	
mm_146948.1	chr18	32553565	32553765	-	1	NA	NA	NA	6369	NM_001347610	71683	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	0.005000	0.542289	
mm_58455.1	chr7	3332051	3332251	+	1	NA	NA	NA	-4434	NM_133189	81904	Mm.214994	NM_133189	ENSMUSG00000069806	Cacng7	-	calcium channel, voltage-dependent, gamma subunit 7	protein-coding	0.040000	0.656716	
mm_38410.1	chr4	139092916	139093116	-	1	NA	NA	NA	-46	NM_008675	17965	Mm.9404	NM_008675	ENSMUSG00000041120	Nbl1	D4H1S1733E|DAN|Dana|NO3	neuroblastoma, suppression of tumorigenicity 1	protein-coding	0.160000	0.800995	
mm_153833.1	chr19	46324737	46324937	-	1	NA	NA	NA	2029	NM_001347454	73728	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.055000	0.646766	
mm_65477.1	chr7	25539752	25539952	-	1	NA	NA	NA	152	NM_001113368	26367	Mm.439731	NM_007543	ENSMUSG00000054385	Ceacam2	AI267129|Bgp2|Ceacam2-L	carcinoembryonic antigen-related cell adhesion molecule 2	protein-coding	0.010000	0.552239	
mm_33815.1	chr4	135337669	135337869	+	1	NA	NA	NA	15445	NM_016799	51796	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.030000	0.517413	
mm_118575.1	chr14	19750814	19751014	+	1	NA	NA	NA	-343	NM_008695	18074	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.065000	0.641791	
mm_49923.1	chr6	39226382	39226582	+	1	NA	NA	NA	-19709	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.020000	0.587065	
mm_142745.1	chr17	48432518	48432718	-	1	NA	NA	NA	110	NM_009694	11811	Mm.281793	NM_009694	ENSMUSG00000040694	Apobec2	Arp1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2	protein-coding	0.025000	0.587065	
mm_11649.1	chr2	34961610	34961810	+	1	NA	NA	NA	62	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.025000	0.601990	
mm_4856.1	chr1	187608913	187609113	+	1	NA	NA	NA	7	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.070000	0.562189	-29(CTATTTATAGTC,+,0.00)
mm_169202.1	chr13	66349166	66349366	-	1	NA	NA	NA	91852	NM_183119	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.020000	0.532338	
mm_15104.1	chr2	153354785	153354985	+	1	NA	NA	NA	8746	NM_001039939	228790	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	mKIAA0978	additional sex combs like 1	protein-coding	0.005000	0.298507	86(TTTTTTATACTC,+,0.00)
mm_122669.1	chr14	51922939	51923139	-	1	NA	NA	NA	-266	NM_001011687	497071	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	0.000000	0.547264	
mm_135662.1	chr16	52407503	52407703	-	1	NA	NA	NA	45478	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.283582	
mm_154733.1	chrX	9747667	9747867	+	1	NA	NA	NA	-84784	NM_025975	67117	Mm.29150	NM_025975	ENSMUSG00000031176	Dynlt3	2310075M16Rik|AU042796|Tcte1l	dynein light chain Tctex-type 3	protein-coding	0.070000	0.636816	
mm_91874.1	chr10	59582901	59583101	-	1	NA	NA	NA	33691	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.010000	0.402985	
mm_97019.1	chr11	71749826	71750026	+	1	NA	NA	NA	-777	NM_177618	216881	Mm.48648	NM_177618	ENSMUSG00000020811	Wscd1	mKIAA0523	WSC domain containing 1	protein-coding	0.010000	0.542289	
mm_127390.1	chr15	101115646	101115846	+	1	NA	NA	NA	-9	NM_144790	208258	Mm.152952	NM_144790	ENSMUSG00000047034	Ankrd33	A930021G21Rik|Panky|Panky-a	ankyrin repeat domain 33	protein-coding	0.005000	0.547264	
mm_110037.1	chr12	17000242	17000442	-	1	NA	NA	NA	-224	NM_001161111	217430	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	0.035000	0.651741	
mm_142683.1	chr17	47732998	47733198	-	1	NA	NA	NA	-3939	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.005000	0.507463	
mm_47916.1	chr5	135000758	135000958	-	1	NA	NA	NA	492	NR_026907	71304	Mm.482317	NR_026907	ENSMUSG00000054909	Wbscr25	4933433J03Rik|4933439O14Rik	Williams Beuren syndrome chromosome region 25 (human)	ncRNA	0.055000	0.606965	
mm_49078.1	chr6	6299346	6299546	+	1	NA	NA	NA	50787	NR_136905	101056138	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0.025000	0.472637	57(GTTTTTAGACGG,+,0.00)
mm_27669.1	chr3	65381298	65381498	-	1	NA	NA	NA	11155	NM_026155	67437	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.000000	0.378109	
mm_121930.1	chr14	23962121	23962321	-	1	NA	NA	NA	41984	NM_001253375	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.005000	0.278607	
mm_139002.1	chr17	45563883	45564083	+	1	NA	NA	NA	-169	NM_028662	73836	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.100000	0.766169	
mm_7929.1	chr1	133906894	133907094	-	1	NA	NA	NA	179	NM_054076	269120	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	0.010000	0.552239	53(GCATCTAAAAGG,-,0.00)
mm_145981.1	chr18	68160090	68160290	+	1	NA	NA	NA	100783	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0.015000	0.437811	
mm_161045.1	chr12	37880160	37880360	+	1	NA	NA	NA	-445	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	0.030000	0.552239	
mm_165531.1	chr2	178506065	178506265	-	1	NA	NA	NA	75650	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.025000	0.572139	
mm_50275.1	chr6	45545783	45545983	+	1	NA	NA	NA	485822	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.000000	0.412935	
mm_142875.1	chr17	51823429	51823629	-	1	NA	NA	NA	3059	NM_001163631	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.005000	0.432836	
mm_79137.1	chr9	47636707	47636907	+	1	NA	NA	NA	106455	NM_018770	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.020000	0.447761	
mm_128408.1	chr15	44728918	44729118	-	1	NA	NA	NA	19654	NM_001285840	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding	0.000000	0.378109	
mm_86676.1	chr10	18105670	18105870	+	1	NA	NA	NA	49830	NM_001111065	19707	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0.000000	0.273632	69(ATGCTTAAAAGC,-,0.00)
mm_89767.1	chr10	100098045	100098245	+	1	NA	NA	NA	82324	NM_013598	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.000000	0.318408	
mm_129643.1	chr15	80565026	80565226	-	1	NA	NA	NA	-4656	NM_001163189	383075	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	0.040000	0.592040	
mm_77083.1	chr8	110522045	110522245	-	1	NA	NA	NA	-19789	NR_105058	100861869	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.025000	0.517413	
mm_113125.1	chr13	24597386	24597586	+	1	NA	NA	NA	7281	NR_024599	76024	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347|OTTMUSG00000000601|OTTMUSG00000000602	X-linked lymphocyte-regulated 5 pseudogene	pseudo	0.005000	0.447761	
mm_62314.1	chr7	100264556	100264756	+	1	NA	NA	NA	112	NR_033563	14777	Mm.57225	NR_033563		Gpx2-ps1	AU041318	glutathione peroxidase 2, pseudogene 1	pseudo	0.025000	0.522388	
mm_26694.1	chr3	156770799	156770999	+	1	NA	NA	NA	209105	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.020000	0.447761	
mm_83781.1	chr9	52149262	52149462	-	1	NA	NA	NA	18749	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.010000	0.432836	
mm_65316.1	chr7	24892113	24892313	-	1	NA	NA	NA	-5298	NM_007655	12518	Mm.1355	NM_007655	ENSMUSG00000003379	Cd79a	Ig-alpha|Iga|Igalpha|Ly-54|Ly54|mb-1	CD79A antigen (immunoglobulin-associated alpha)	protein-coding	0.010000	0.457711	
mm_87650.1	chr10	58421555	58421755	+	1	NA	NA	NA	-25197	NM_011240	19386	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0.005000	0.303483	
mm_23113.1	chr3	37613819	37614019	+	1	NA	NA	NA	6	NR_130161	75947	Mm.109620	NR_130161	ENSMUSG00000085677	4930594O21Rik	-	RIKEN cDNA 4930594O21 gene	ncRNA	0.035000	0.587065	
mm_18983.1	chr2	76853550	76853750	-	1	NA	NA	NA	128897	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.010000	0.452736	
mm_123451.1	chr14	65199897	65200097	-	1	NA	NA	NA	62466	NM_021458	14365	Mm.214687	NM_021458	ENSMUSG00000007989	Fzd3	AU020229|D930050A07Rik|Fz3	frizzled class receptor 3	protein-coding	0.005000	0.328358	
mm_98952.1	chr11	98457906	98458106	+	1	NA	NA	NA	11172	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.095000	0.731343	
mm_93981.1	chr10	127351659	127351859	-	1	NA	NA	NA	89	NM_008382	16326	Mm.3510	NM_008382	ENSMUSG00000047492	Inhbe	-	inhibin beta-E	protein-coding	0.005000	0.527363	-80(GGCTCTAAAGAG,-,0.00)
mm_154613.1	chrX	7652836	7653036	+	1	NA	NA	NA	-4443	NM_001290624	54630	Mm.232232	NM_175097	ENSMUSG00000031145	Prickle3	Lmo6|Sfc16	prickle planar cell polarity protein 3	protein-coding	0.025000	0.562189	
mm_118940.1	chr14	27237956	27238156	+	1	NA	NA	NA	46	NM_027871	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.025000	0.572139	
mm_129240.1	chr15	76639825	76640025	-	1	NA	NA	NA	4	NM_183091	72749	Mm.358749	NM_183091	ENSMUSG00000059323	Tonsl	2810439M11Rik|Nfkbil2	tonsoku-like, DNA repair protein	protein-coding	0.070000	0.606965	
mm_110267.1	chr12	31950130	31950330	-	1	NA	NA	NA	305	NM_177993	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.075000	0.577114	
mm_149126.1	chr19	8990551	8990751	+	1	NA	NA	NA	1367	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.025000	0.587065	
mm_143255.1	chr17	65540689	65540889	-	1	NA	NA	NA	-7	NM_001289486	381107	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	0.035000	0.532338	
mm_142075.1	chr17	35701842	35702042	-	1	NA	NA	NA	102	NM_001198831	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.020000	0.572139	
mm_76654.1	chr8	93194979	93195179	-	1	NA	NA	NA	2725	NM_053200	104158	Mm.292803	NM_053200	ENSMUSG00000056973	Ces1d	Ces3|TGH	carboxylesterase 1D	protein-coding	0.000000	0.467662	
mm_111503.1	chr12	99434317	99434517	-	1	NA	NA	NA	15657	NM_183186	71375	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.015000	0.398010	
mm_164952.1	chr19	5406716	5406916	+	1	NA	NA	NA	1	NR_027938	74931	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	0.030000	0.522388	
mm_87687.1	chr10	59346232	59346432	+	1	NA	NA	NA	23036	NM_001316370	18451	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.010000	0.402985	
mm_53789.1	chr6	146640192	146640392	+	1	NA	NA	NA	-2287	NM_025315	108098	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	0.010000	0.422886	
mm_6439.1	chr1	73998316	73998516	-	1	NA	NA	NA	126031	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.010000	0.587065	
mm_49363.1	chr6	22936378	22936578	+	1	NA	NA	NA	60976	NM_001081306	19283	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding	0.010000	0.338308	
mm_141924.1	chr17	35002484	35002684	-	1	NA	NA	NA	1677	NM_011690	22321	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.015000	0.542289	
mm_107793.1	chr12	62065856	62066056	+	1	NA	NA	NA	542789	NM_001310586	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.000000	0.293532	-55(GGATTTAAAAAC,-,0.00)
mm_135127.1	chr16	35843755	35843955	-	1	NA	NA	NA	27527	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.000000	0.388060	
mm_79174.1	chr9	47852768	47852968	+	1	NA	NA	NA	-34660	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.005000	0.313433	
mm_62165.1	chr7	97211408	97211608	+	1	NA	NA	NA	114456	NM_001177412	244144	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.005000	0.313433	-10(CTTTTTAGACAG,+,0.00)
mm_68248.1	chr7	105565412	105565612	-	1	NA	NA	NA	3265	NM_001310600	11785	Mm.38469	NM_009685	ENSMUSG00000037032	Apbb1	Fe65|Rir	amyloid beta (A4) precursor protein-binding, family B, member 1	protein-coding	0.025000	0.577114	
mm_34128.1	chr4	139268609	139268809	+	1	NA	NA	NA	41991	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.010000	0.502488	
mm_95028.1	chr11	32024757	32024957	+	1	NA	NA	NA	23580	NM_001290681	18197	Mm.3304	NM_008741	ENSMUSG00000020297	Nsg2	-	neuron specific gene family member 2	protein-coding	0.010000	0.402985	
mm_96979.1	chr11	70654997	70655197	+	1	NA	NA	NA	-447	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.130000	0.721393	
mm_40308.1	chr5	43818847	43819047	+	1	NA	NA	NA	54	NM_009763	12182	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	0.020000	0.597015	
mm_59904.1	chr7	30321700	30321900	+	1	NA	NA	NA	575	NM_001033140	68332	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	0.035000	0.527363	
mm_55961.1	chr6	85451873	85452073	-	1	NA	NA	NA	-3	NR_028081	73327	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	0.090000	0.646766	
mm_81212.1	chr9	107580690	107580890	+	1	NA	NA	NA	121	NM_019750	56441	Mm.10305	NM_019750	ENSMUSG00000079334	Nat6	AI225910|Fus2	N-acetyltransferase 6	protein-coding	0.055000	0.606965	
mm_4751.1	chr1	182255337	182255537	+	1	NA	NA	NA	27322	NM_007853	13244	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.025000	0.577114	
mm_57825.1	chr6	129463002	129463202	-	1	NA	NA	NA	9677	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.373134	
mm_8838.1	chr1	162675415	162675615	-	1	NA	NA	NA	-17296	NM_001177581	100038657	Mm.416999	NM_001177581	ENSMUSG00000091060	7420461P10Rik	ENSMUSG00000073516	RIKEN cDNA 7420461P10 gene	protein-coding	0.015000	0.452736	
mm_50563.1	chr6	49047863	49048063	+	1	NA	NA	NA	11445	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.035000	0.552239	
mm_5256.1	chr1	16656770	16656970	-	1	NA	NA	NA	-5	NM_026456	67923	Mm.289248	NM_026456	ENSMUSG00000079658	Eloc	2610043E24Rik|2610301I15Rik|AA407206|AI987979|AW049146|Tceb1	elongin C	protein-coding	0.075000	0.626866	
mm_111384.1	chr12	87443725	87443925	-	1	NA	NA	NA	14	NM_001102565	211064	Mm.486235	NM_001102565	ENSMUSG00000079036	Alkbh1	2700073G19Rik|Abh|Alkbh|alkB|hABH	alkB homolog 1, histone H2A dioxygenase	protein-coding	0.065000	0.582090	
mm_11517.1	chr2	32606860	32607060	+	1	NA	NA	NA	-25	NM_001289547	50935	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.130000	0.776119	
mm_118187.1	chr13	107565229	107565429	-	1	NA	NA	NA	95507	NR_045084	105120	Mm.417700	NR_045083		AI197445	-	expressed sequence AI197445	ncRNA	0.005000	0.398010	
mm_56890.1	chr6	119086566	119086766	-	1	NA	NA	NA	21829	NM_001159534	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.015000	0.512438	
mm_498.1	chr1	36983899	36984099	+	1	NA	NA	NA	-44472	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.020000	0.552239	
mm_65554.1	chr7	27133381	27133581	-	1	NA	NA	NA	13526	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.030000	0.502488	
mm_124049.1	chr14	77856879	77857079	-	1	NA	NA	NA	17938	NM_025384	66148	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	0.015000	0.407960	-43(GACTATAAATGA,-,0.00)
mm_103436.1	chr11	75906601	75906801	-	1	NA	NA	NA	4358	NM_029548	380714	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	0.035000	0.597015	
mm_28725.1	chr3	95687771	95687971	-	1	NA	NA	NA	46	NM_144899	229595	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.110000	0.756219	
mm_33132.1	chr4	124936993	124937193	+	1	NA	NA	NA	45	NM_177573	194268	Mm.266907	NM_177573		9930104L06Rik	-	RIKEN cDNA 9930104L06 gene	protein-coding	0.055000	0.477612	
mm_3932.1	chr1	163762026	163762226	+	1	NA	NA	NA	-17457	NM_001305643	16579	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	0.000000	0.393035	
mm_43237.1	chr5	130029209	130029409	+	1	NA	NA	NA	3	NM_007761	12909	Mm.18072	NM_007761	ENSMUSG00000025532	Crcp	AL022669	calcitonin gene-related peptide-receptor component protein	protein-coding	0.095000	0.621891	
mm_16079.1	chr2	168231164	168231364	+	1	NA	NA	NA	642	NM_001160330	69372	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	0.155000	0.721393	
mm_75231.1	chr8	39625009	39625209	-	1	NA	NA	NA	17569	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.005000	0.318408	
mm_116718.1	chr13	51644797	51644997	-	1	NA	NA	NA	-335	NM_025415	66197	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0.060000	0.562189	
mm_68334.1	chr7	106504318	106504518	-	1	NA	NA	NA	-63345	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.005000	0.388060	41(CTTTATATGCGC,+,0.00)
mm_102157.1	chr11	53724253	53724453	-	1	NA	NA	NA	3559	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.005000	0.487562	
mm_125010.1	chr15	25622442	25622642	+	1	NA	NA	NA	-8	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.085000	0.646766	
mm_165210.1	chr2	34976566	34976766	+	1	NA	NA	NA	-14894	NM_001326601	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.020000	0.522388	
mm_126922.1	chr15	91672141	91672341	+	1	NA	NA	NA	-983	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.015000	0.398010	
mm_149064.1	chr19	8840471	8840671	+	1	NA	NA	NA	68	NM_001290823	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.080000	0.666667	
mm_157749.1	chrX	73458917	73459117	-	1	NA	NA	NA	12	NM_028633	73738	Mm.264899	NM_028633	ENSMUSG00000031371	Haus7	1110020L19Rik|Uchl5ip|Uip1	HAUS augmin-like complex, subunit 7	protein-coding	0.075000	0.621891	
mm_161074.1	chr12	80518279	80518479	+	1	NA	NA	NA	-611	NM_001081421	108760	Mm.308296	NM_001081421	ENSMUSG00000021130	Galnt16	5730405L21Rik|AI415388|Galntl1|mpp-GalNAc-T16	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16	protein-coding	0.050000	0.582090	
mm_171976.1	chr5	89209062	89209262	-	1	NA	NA	NA	248736	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.040000	0.512438	
mm_146574.1	chr18	7004625	7004825	-	1	NA	NA	NA	54	NM_177595	210719	Mm.257186	NM_177595	ENSMUSG00000061013	Mkx	9430023B20Rik|Irxl1	mohawk homeobox	protein-coding	0.090000	0.626866	
mm_126453.1	chr15	80897096	80897296	+	1	NA	NA	NA	-42843	NR_039573	100628612		NR_039573	ENSMUSG00000092868	Mir5113	mir-5113|mmu-mir-5113|mu-mir-5113	microRNA 5113	ncRNA	0.010000	0.442786	
mm_76243.1	chr8	83588415	83588615	-	1	NA	NA	NA	5976	NM_027179	106529	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	0.020000	0.557214	
mm_2220.1	chr1	90005092	90005292	+	1	NA	NA	NA	9385	NM_139152	208372	Mm.215164	NM_139152	ENSMUSG00000067081	Asb18	Asb-18	ankyrin repeat and SOCS box-containing 18	protein-coding	0.010000	0.497512	
mm_88417.1	chr10	77166533	77166733	+	1	NA	NA	NA	-103	NM_009929	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.050000	0.636816	
mm_88040.1	chr10	67537769	67537969	+	1	NA	NA	NA	0	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.040000	0.537313	-74(GTCCATATATGG,-,0.00),-72(CCATATATGGGC,+,0.00),-34(GCCCATAAATAC,-,0.00)
mm_155550.1	chrX	74424552	74424752	+	1	NA	NA	NA	40	NM_001136067	16151	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	0.000000	0.537313	
mm_25182.1	chr3	103321801	103322001	+	1	NA	NA	NA	42608	NM_001079830	94093	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.000000	0.313433	
mm_100804.1	chr11	5061914	5062114	-	1	NA	NA	NA	3313	NM_144560	78926	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0.080000	0.676617	
mm_49871.1	chr6	38562180	38562380	+	1	NA	NA	NA	6557	NM_001331223	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.010000	0.452736	
mm_169312.1	chr14	104715882	104716082	-	1	NA	NA	NA	76835	NR_015593	320249	Mm.320725	NR_015593		D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0.075000	0.502488	72(AACTTTAAATGG,-,0.00)
mm_132800.1	chr16	45094028	45094228	+	1	NA	NA	NA	75	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.025000	0.527363	
mm_141107.1	chr17	26021760	26021960	-	1	NA	NA	NA	0	NM_153140	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.025000	0.532338	
mm_12369.1	chr2	69821824	69822024	+	1	NA	NA	NA	-446	NM_177784	277396	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	0.015000	0.512438	
mm_35381.1	chr4	33246370	33246570	-	1	NA	NA	NA	2317	NM_001033225	108767	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.005000	0.358209	
mm_170160.1	chr17	51796145	51796345	-	1	NA	NA	NA	15809	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.020000	0.452736	
mm_129524.1	chr15	79254651	79254851	-	1	NA	NA	NA	-3	NM_020516	57274	Mm.441697	NM_020516	ENSMUSG00000032988	Slc16a8	Mct3	solute carrier family 16 (monocarboxylic acid transporters), member 8	protein-coding	0.015000	0.592040	
mm_122487.1	chr14	46390384	46390584	-	1	NA	NA	NA	185	NM_001316360	12159	Mm.6813	NM_007554	ENSMUSG00000021835	Bmp4	Bmp-4|Bmp2b|Bmp2b-1|Bmp2b1	bone morphogenetic protein 4	protein-coding	0.060000	0.616915	
mm_156915.1	chrX	169082649	169082849	+	1	NA	NA	NA	-30129	NM_001287530	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.000000	0.338308	
mm_108171.1	chr12	76404315	76404515	+	1	NA	NA	NA	45	NM_008301	15512	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0.085000	0.621891	
mm_25570.1	chr3	116661668	116661868	+	1	NA	NA	NA	909	NM_008246	15247	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	0.045000	0.442786	27(CTGTCTAAAAGG,-,0.00)
mm_129710.1	chr15	81858171	81858371	-	1	NA	NA	NA	55	NM_020507	57259	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.065000	0.621891	
mm_46359.1	chr5	103211141	103211341	-	1	NA	NA	NA	93	NM_001081567	26414	Mm.39253	NM_009158	ENSMUSG00000046709	Mapk10	C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding	0.025000	0.532338	
mm_160870.1	chr11	67237901	67238101	+	1	NA	NA	NA	189	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.005000	0.417910	
mm_146043.1	chr18	69593116	69593316	+	1	NA	NA	NA	247495	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.055000	0.547264	
mm_171296.1	chr3	91126928	91127128	+	1	NA	NA	NA	-36223	NM_001101461	229550	Mm.98335	NM_001101461	ENSMUSG00000091175	9130204L05Rik	Gm127	RIKEN cDNA 9130204L05 gene	protein-coding	0.075000	0.651741	
mm_80151.1	chr9	70928203	70928403	+	1	NA	NA	NA	6505	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.000000	0.437811	
mm_44321.1	chr5	9725159	9725359	-	1	NA	NA	NA	93	NM_181850	108069	Mm.318966	NM_181850	ENSMUSG00000003974	Grm3	0710001G23Rik|Gprc1c|mGlu3|mGluR3	glutamate receptor, metabotropic 3	protein-coding	0.050000	0.592040	
mm_120196.1	chr14	61607321	61607521	+	1	NA	NA	NA	-36	NM_206974	328424	Mm.224464	NM_206974	ENSMUSG00000046168	Kcnrg	Clld4|E030012H22Rik|Gm745	potassium channel regulator	protein-coding	0.005000	0.412935	
mm_120583.1	chr14	69775014	69775214	+	1	NA	NA	NA	7642	NM_020275	21933	Mm.193430	NM_020275	ENSMUSG00000022074	Tnfrsf10b	DR5|KILLER|Ly98|MK|TRAILR2|TRICK2A|TRICK2B|TRICKB	tumor necrosis factor receptor superfamily, member 10b	protein-coding	0.025000	0.467662	
mm_23805.1	chr3	79885013	79885213	+	1	NA	NA	NA	-817	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.040000	0.482587	-34(CAGCTTTTAAGG,-,0.00),-33(AGCTTTTAAGGC,-,0.00),-32(GCTTTTAAGGCT,+,0.00)
mm_1590.1	chr1	74332571	74332771	+	1	NA	NA	NA	61	NM_019999	56695	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0.095000	0.711443	
mm_32883.1	chr4	118961595	118961795	+	1	NA	NA	NA	-272	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.005000	0.552239	
mm_143687.1	chr17	80173712	80173912	-	1	NA	NA	NA	33493	NM_001195486	225027	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0.000000	0.477612	
mm_53971.1	chr6	6215256	6215456	-	1	NA	NA	NA	1817	NM_015829	50799	Mm.24513	NM_015829	ENSMUSG00000015112	Slc25a13	AI785475|Ctrn	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	protein-coding	0.005000	0.393035	
mm_169406.1	chr14	51483069	51483269	-	1	NA	NA	NA	31207	NM_009486	22301	Mm.482572	NM_009486	ENSMUSG00000070448	Vmn2r89	V2r10|V2r11	vomeronasal 2, receptor 89	protein-coding	0.025000	0.467662	
mm_139193.1	chr17	47611495	47611695	+	1	NA	NA	NA	-1	NM_020048	56771	Mm.59393	NM_020048	ENSMUSG00000092558	Med20	1110011O05Rik|2410115I17Rik|AU018348|Trfp	mediator complex subunit 20	protein-coding	0.095000	0.592040	
mm_15722.1	chr2	164078027	164078227	+	1	NA	NA	NA	3949	NM_021420	58231	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.010000	0.402985	
mm_37071.1	chr4	116151263	116151463	-	1	NA	NA	NA	-68	NM_001290658	68273	Mm.196045	NM_026651	ENSMUSG00000028700	Pomgnt1	0610016I07Rik|4930467B06Rik	protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase	protein-coding	0.005000	0.492537	
mm_2334.1	chr1	92831679	92831879	+	1	NA	NA	NA	93	NM_016696	14733	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.160000	0.756219	
mm_134599.1	chr16	20621142	20621342	-	1	NA	NA	NA	36	NM_028420	73047	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	0.105000	0.711443	
mm_109337.1	chr12	109583570	109583770	+	1	NA	NA	NA	-2119	NR_029765	723843		NR_029765	ENSMUSG00000065526	Mir337	Mirn337|mir-337|mmu-mir-337	microRNA 337	ncRNA	0.010000	0.487562	-31(GTGTCTTAAAGA,-,0.00)
mm_108384.1	chr12	80885747	80885947	+	1	NA	NA	NA	38600	NR_033786	67340	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.030000	0.527363	
mm_163346.1	chr12	16853467	16853667	+	1	NA	NA	NA	-41411	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0.015000	0.492537	
mm_117231.1	chr13	64272521	64272721	-	1	NA	NA	NA	2367	NM_172587	218294	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	0.000000	0.373134	
mm_164198.1	chr15	79739536	79739736	+	1	NA	NA	NA	2900	NM_194342	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.010000	0.557214	
mm_67355.1	chr7	79836275	79836475	-	1	NA	NA	NA	5977	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.030000	0.552239	
mm_20715.1	chr2	134643994	134644194	-	1	NA	NA	NA	27	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding	0.070000	0.696517	
mm_118174.1	chr13	106935987	106936187	-	1	NA	NA	NA	828	NM_029665	76582	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.030000	0.393035	
mm_61646.1	chr7	80387940	80388140	+	1	NA	NA	NA	-94	NM_010194	14159	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.055000	0.656716	
mm_7770.1	chr1	131200085	131200285	-	1	NA	NA	NA	0	NM_001311094	54354	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.020000	0.626866	
mm_60640.1	chr7	44840102	44840302	+	1	NA	NA	NA	3914	NM_010215	14204	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	0.085000	0.661692	
mm_33952.1	chr4	137453185	137453385	+	1	NA	NA	NA	-11	NM_027063	69380	Mm.272519	NM_027063	ENSMUSG00000041399	1700013G24Rik	AI507018	RIKEN cDNA 1700013G24 gene	protein-coding	0.015000	0.572139	
mm_79123.1	chr9	46913465	46913665	+	1	NA	NA	NA	-38	NR_015605	73040	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA	0.010000	0.527363	
mm_102295.1	chr11	55419767	55419967	-	1	NA	NA	NA	213	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.025000	0.641791	
mm_143597.1	chr17	75504989	75505189	-	1	NA	NA	NA	39551	NM_207246	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding	0.015000	0.442786	
mm_5625.1	chr1	40382395	40382595	-	1	NA	NA	NA	-47075	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.010000	0.487562	-73(CCTTTTATGGTC,+,0.00),-35(GCTTATATAATG,+,0.00)
mm_131447.1	chr16	16302924	16303124	+	1	NA	NA	NA	59	NM_198246	70120	Mm.37486	NM_198246	ENSMUSG00000022792	Yars2	2210023C10Rik|tyrRS	tyrosyl-tRNA synthetase 2 (mitochondrial)	protein-coding	0.130000	0.721393	
mm_159452.1	chr3	144819386	144819586	-	1	NA	NA	NA	8	NM_030601	80797	Mm.20897	NM_030601	ENSMUSG00000028262	Clca3a2	Clca2	chloride channel accessory 3A2	protein-coding	0.020000	0.507463	
mm_156665.1	chrX	158248674	158248874	+	1	NA	NA	NA	-205577	NM_177751	245684	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding	0.015000	0.427861	
mm_93475.1	chr10	111516872	111517072	-	1	NA	NA	NA	10686	NM_009344	21664	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0.005000	0.462687	
mm_131666.1	chr16	20629895	20630095	+	1	NA	NA	NA	144	NM_139293	107522	Mm.263319	NM_025462	ENSMUSG00000022842	Ece2	1810009K13Rik|6330509A19Rik|9630025D12Rik|BB127715|Ece-2	endothelin converting enzyme 2	protein-coding	0.075000	0.691542	
mm_42874.1	chr5	122240873	122241073	+	1	NA	NA	NA	23487	NR_104441	654470	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.015000	0.542289	-67(GGCTTGTAAAGC,-,0.00)
mm_124779.1	chr15	7216239	7216439	+	1	NA	NA	NA	75797	NM_013584	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.025000	0.398010	
mm_34382.1	chr4	144912594	144912794	+	1	NA	NA	NA	19557	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.005000	0.547264	
mm_76239.1	chr8	83577864	83578064	-	1	NA	NA	NA	11206	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.010000	0.432836	
mm_56002.1	chr6	86487842	86488042	-	1	NA	NA	NA	285	NR_040293	381792	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.030000	0.597015	
mm_63131.1	chr7	123001801	123002001	+	1	NA	NA	NA	31337	NM_175023	19647	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6	protein-coding	0.020000	0.537313	
mm_154838.1	chrX	19167389	19167589	+	1	NA	NA	NA	-20518	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.015000	0.452736	-32(GCTTTAAAACAA,+,0.00)
mm_7347.1	chr1	105990159	105990359	-	1	NA	NA	NA	-147	NM_001122676	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.080000	0.641791	
mm_20266.1	chr2	126675385	126675585	-	1	NA	NA	NA	107	NM_001271469	14391	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.140000	0.716418	
mm_163166.1	chr11	86599968	86600168	+	1	NA	NA	NA	-15910	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.477612	
mm_113917.1	chr13	49544406	49544606	+	1	NA	NA	NA	63	NM_025711	66695	Mm.383216	NM_025711	ENSMUSG00000021388	Aspn	4631401G09Rik|AA986886|Plap1|Slrr1c	asporin	protein-coding	0.005000	0.393035	
mm_114143.1	chr13	55316767	55316967	+	1	NA	NA	NA	5113	NM_009000	19336	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	0.010000	0.383085	
mm_7342.1	chr1	105984052	105984252	-	1	NA	NA	NA	-6254	NM_001122676	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.000000	0.417910	
mm_98840.1	chr11	97450058	97450258	+	1	NA	NA	NA	-2	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.045000	0.651741	
mm_96752.1	chr11	69901631	69901831	+	1	NA	NA	NA	-85	NM_001291118	216860	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	0.090000	0.646766	
mm_161785.1	chr17	44237048	44237248	+	1	NA	NA	NA	48576	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	0.025000	0.487562	
mm_98881.1	chr11	97815495	97815695	+	1	NA	NA	NA	15923	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.025000	0.601990	
mm_120794.1	chr14	74733841	74734041	+	1	NA	NA	NA	1644	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.005000	0.288557	71(GTTTTTAGAGCC,+,0.00)
mm_64287.1	chr7	141856605	141856805	+	1	NA	NA	NA	17633	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.020000	0.492537	
mm_41444.1	chr5	90905192	90905392	+	1	NA	NA	NA	1393	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.020000	0.412935	
mm_92733.1	chr10	80906313	80906513	-	1	NA	NA	NA	-1	NM_001347140	16907	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0.020000	0.611940	
mm_159415.1	chr3	105458703	105458903	+	1	NA	NA	NA	-13	NM_019931	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	0.015000	0.592040	
mm_142968.1	chr17	56121898	56122098	-	1	NA	NA	NA	-52	NM_029796	76905	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0.005000	0.542289	58(GACTATATAAAG,-,0.00),60(CTATATAAAGCC,+,0.00)
mm_95358.1	chr11	48871550	48871750	+	1	NA	NA	NA	-304	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding	0.025000	0.587065	
mm_8764.1	chr1	160792756	160792956	-	1	NA	NA	NA	82	NM_013862	29809	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0.115000	0.751244	
mm_120419.1	chr14	65358576	65358776	+	1	NA	NA	NA	0	NM_199029	380912	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.150000	0.800995	
mm_37169.1	chr4	117178640	117178840	-	1	NA	NA	NA	32	NM_001290662	73804	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.010000	0.487562	
mm_34894.1	chr4	155624836	155625036	+	1	NA	NA	NA	67	NM_007661	12537	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	0.135000	0.691542	
mm_172802.1	chr9	118674894	118675094	-	1	NA	NA	NA	-36698	NM_001113514	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.055000	0.472637	
mm_126001.1	chr15	76520812	76521012	+	1	NA	NA	NA	1217	NM_130893	170729	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.010000	0.562189	
mm_16132.1	chr2	170336623	170336823	+	1	NA	NA	NA	-19638	NR_040610	73303	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.005000	0.537313	
mm_147.1	chr1	11089660	11089860	+	1	NA	NA	NA	96295	NM_029525	109294	Mm.123247	NM_029525	ENSMUSG00000048960	Prex2	6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	protein-coding	0.020000	0.497512	
mm_109705.1	chr12	113421511	113421711	+	1	NA	NA	NA	-67954	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.492537	
mm_132552.1	chr16	37883648	37883848	+	1	NA	NA	NA	15348	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.020000	0.368159	-16(TTTTTTAAAAGG,-,0.00),27(GGATTTAAAAAC,-,0.00)
mm_129157.1	chr15	76241187	76241387	-	1	NA	NA	NA	2153	NM_001163576	671535	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0.015000	0.522388	
mm_134031.1	chr16	5012640	5012840	-	1	NA	NA	NA	813	NM_133185	66049	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	0.010000	0.487562	
mm_150005.1	chr19	29289138	29289338	+	1	NA	NA	NA	36080	NM_013754	27356	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding	0.025000	0.447761	
mm_91896.1	chr10	60002899	60003099	-	1	NA	NA	NA	136	NM_001347451	52717	Mm.21793	NM_025514	ENSMUSG00000020107	Anapc16	2310005G07Rik|APC16|D10Ertd641e	anaphase promoting complex subunit 16	protein-coding	0.100000	0.671642	
mm_96815.1	chr11	69992508	69992708	+	1	NA	NA	NA	1238	NM_019749	56486	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0.030000	0.502488	
mm_109009.1	chr12	103341438	103341638	+	1	NA	NA	NA	14463	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.010000	0.557214	
mm_20595.1	chr2	131174729	131174929	-	1	NA	NA	NA	-19	NM_027641	70997	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	0.040000	0.497512	
mm_136375.1	chr16	92825659	92825859	-	1	NA	NA	NA	315	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.015000	0.482587	
mm_4347.1	chr1	171864297	171864497	+	1	NA	NA	NA	24700	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.025000	0.487562	
mm_162419.1	chr1	91437870	91438070	+	1	NA	NA	NA	21358	NM_011066	18627	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.015000	0.472637	
mm_53516.1	chr6	136417714	136417914	+	1	NA	NA	NA	-2245	NM_001201390	100502936	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	0.020000	0.388060	
mm_11055.1	chr2	27442414	27442614	+	1	NA	NA	NA	8116	NR_106102	102466836		NR_106102	ENSMUSG00000098812	Mir7578	Gm27789|mmu-mir-7578	microRNA 7578	ncRNA	0.110000	0.691542	
mm_46314.1	chr5	100593544	100593744	-	1	NA	NA	NA	-21439	NM_139198	231507	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.010000	0.457711	
mm_125096.1	chr15	27571460	27571660	+	1	NA	NA	NA	66	NR_106065	102466808		NR_106065	ENSMUSG00000098416	Mir7117	Gm27729|mmu-mir-7117	microRNA 7117	ncRNA	0.040000	0.522388	
mm_122382.1	chr14	40899159	40899359	-	1	NA	NA	NA	-6294	NM_177816	328381	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.020000	0.512438	
mm_49356.1	chr6	22075795	22075995	+	1	NA	NA	NA	89985	NM_001081351	214642	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.005000	0.358209	
mm_36807.1	chr4	103173495	103173695	-	1	NA	NA	NA	41289	NM_177732	242585	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.020000	0.427861	
mm_115944.1	chr13	23705952	23706152	-	1	NA	NA	NA	4802	NM_001347493	15216	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0.020000	0.537313	
mm_169696.1	chr15	75048904	75049104	+	1	NA	NA	NA	-167	NM_001252056	17067	Mm.1583	NM_010741	ENSMUSG00000079018	Ly6c1	AA682074|AA959465|Ly-6C|Ly-6C1|Ly6c	lymphocyte antigen 6 complex, locus C1	protein-coding	0.005000	0.482587	
mm_88486.1	chr10	77686503	77686703	+	1	NA	NA	NA	34	NM_001287074	252974	Mm.221237	NM_145855	ENSMUSG00000069581	Tspear	C330046G03Rik|ORF65|TSP-EAR|Tnep1	thrombospondin type laminin G domain and EAR repeats	protein-coding	0.025000	0.567164	
mm_91634.1	chr10	42191929	42192129	-	1	NA	NA	NA	84713	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.010000	0.522388	
mm_33999.1	chr4	137913613	137913813	+	1	NA	NA	NA	51476	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.095000	0.676617	
mm_140810.1	chr17	22347809	22348009	-	1	NA	NA	NA	13491	NM_176962	319615	Mm.442162	NM_176962	ENSMUSG00000033972	Zfp944	6330416L07Rik	zinc finger protein 944	protein-coding	0.015000	0.482587	
mm_38503.1	chr4	141115182	141115382	-	1	NA	NA	NA	24514	NR_102344	213491	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0.005000	0.338308	
mm_65604.1	chr7	27366449	27366649	-	1	NA	NA	NA	-10541	NM_138676	192192	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	0.025000	0.606965	
mm_138740.1	chr17	37002393	37002593	+	1	NA	NA	NA	11	NM_001168501	22715	Mm.305561	NM_009559	ENSMUSG00000036036	Zfp57	G19|Zfp-57	zinc finger protein 57	protein-coding	0.035000	0.512438	
mm_166202.1	chr5	38480166	38480366	-	1	NA	NA	NA	40	NM_001102414	117591	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.040000	0.567164	
mm_1339.1	chr1	66175094	66175294	+	1	NA	NA	NA	-135	NM_008632	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.130000	0.810945	
mm_160156.1	chr7	43995769	43995969	+	1	NA	NA	NA	-8	NM_010640	16613	Mm.443378	NM_010640	ENSMUSG00000044485	Klk1b11	Klk11|mGK-11	kallikrein 1-related peptidase b11	protein-coding	0.000000	0.542289	
mm_95589.1	chr11	53330492	53330692	+	1	NA	NA	NA	5903	NM_026479	67966	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0.020000	0.482587	
mm_16762.1	chr2	9877786	9877986	-	1	NA	NA	NA	714	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.030000	0.452736	
mm_170700.1	chr2	135512264	135512464	+	1	NA	NA	NA	70856	NR_015544	320684	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.055000	0.646766	
mm_154271.1	chr19	60773840	60774040	-	1	NA	NA	NA	445	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.010000	0.442786	
mm_31762.1	chr4	63385919	63386119	+	1	NA	NA	NA	12221	NM_001305432	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.030000	0.512438	
mm_85192.1	chr9	96719840	96720040	-	1	NA	NA	NA	11735	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.145000	0.776119	
mm_66552.1	chr7	45211797	45211997	-	1	NA	NA	NA	-14	NM_015789	50722	Mm.27287	NM_015789	ENSMUSG00000030792	Dkkl1	AI414495|SGY|SGY-1|SGY1|Soggy|mSgy	dickkopf-like 1	protein-coding	0.075000	0.582090	
mm_144644.1	chr18	33181891	33182091	+	1	NA	NA	NA	31871	NM_001347624	170459	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	0.025000	0.497512	
mm_25671.1	chr3	121953236	121953436	+	1	NA	NA	NA	10	NM_172525	214137	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.145000	0.756219	
mm_157479.1	chrX	48161462	48161662	-	1	NA	NA	NA	15126	NM_028773	74131	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	0.020000	0.422886	
mm_12120.1	chr2	61616892	61617092	+	1	NA	NA	NA	23895	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.000000	0.378109	
mm_143443.1	chr17	70853456	70853656	-	1	NA	NA	NA	-24	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.055000	0.616915	
mm_55005.1	chr6	48836192	48836392	-	1	NA	NA	NA	4696	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.015000	0.532338	
mm_36912.1	chr4	108069866	108070066	-	1	NA	NA	NA	-17391	NR_105823	102465213		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	0.005000	0.368159	
mm_84985.1	chr9	86359500	86359700	-	1	NA	NA	NA	105316	NM_027394	70348	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	0.005000	0.353234	
mm_5383.1	chr1	30950010	30950210	-	1	NA	NA	NA	-355	NM_011200	19243	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	0.080000	0.626866	
mm_137736.1	chr17	29347923	29348123	+	1	NA	NA	NA	-91	NM_001347335	56462	Mm.285322	NM_019880	ENSMUSG00000024012	Mtch1	2310034O17Rik|AI255158|AU018396|C77849|PSAP	mitochondrial carrier 1	protein-coding	0.060000	0.636816	
mm_137460.1	chr17	26602129	26602329	+	1	NA	NA	NA	40717	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.015000	0.572139	
mm_37785.1	chr4	130275430	130275630	-	1	NA	NA	NA	56	NM_172702	230779	Mm.45132	NM_172702	ENSMUSG00000023232	Serinc2	2310004K20Rik|AW121759|FKSG84|TDE2|Tde2l	serine incorporator 2	protein-coding	0.095000	0.756219	
mm_146022.1	chr18	69519686	69519886	+	1	NA	NA	NA	174065	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.020000	0.452736	
mm_110826.1	chr12	72628759	72628959	-	1	NA	NA	NA	35969	NM_025522	66375	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.035000	0.577114	
mm_162928.1	chr10	122678879	122679079	-	1	NA	NA	NA	217	NM_001110218	319468	Mm.489703	NM_176919	ENSMUSG00000034613	Ppm1h	A430075L18Rik|ARHCL1|C030002B11Rik	protein phosphatase 1H (PP2C domain containing)	protein-coding	0.135000	0.776119	
mm_171121.1	chr3	142631954	142632154	+	1	NA	NA	NA	-8108	NR_105802	102465200		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.000000	0.482587	
mm_108959.1	chr12	102377064	102377264	+	1	NA	NA	NA	62649	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.010000	0.512438	
mm_162757.1	chr10	61351907	61352107	+	1	NA	NA	NA	31516	NM_013753	27355	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.010000	0.507463	67(ACTTTTAGAGTC,+,0.00)
mm_161057.1	chr12	58211661	58211861	+	1	NA	NA	NA	-43	NM_009216	20605	Mm.278336	NM_009216	ENSMUSG00000035431	Sstr1	SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1	somatostatin receptor 1	protein-coding	0.035000	0.527363	
mm_158523.1	chrX	143860302	143860502	-	1	NA	NA	NA	-32990	NM_007603	12338	Mm.30290	NM_007603	ENSMUSG00000067276	Capn6	-	calpain 6	protein-coding	0.000000	0.442786	
mm_35856.1	chr4	49447074	49447274	-	1	NA	NA	NA	3935	NM_001164565	230161	Mm.30101	NM_001164565	ENSMUSG00000070985	Acnat1	AI132189	acyl-coenzyme A amino acid N-acyltransferase 1	protein-coding	0.010000	0.368159	
mm_155195.1	chrX	56455367	56455567	+	1	NA	NA	NA	628	NM_172779	236790	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	0.090000	0.646766	
mm_137940.1	chr17	32685513	32685713	+	1	NA	NA	NA	-18	NM_001346538	106648	Mm.26539	NM_134127	ENSMUSG00000073424	Cyp4f15	AI787289|Cyp4f-15	cytochrome P450, family 4, subfamily f, polypeptide 15	protein-coding	0.005000	0.537313	
mm_65369.1	chr7	25072642	25072842	-	1	NA	NA	NA	-373	NM_008168	14809	Mm.2879	NM_008168	ENSMUSG00000003378	Grik5	GluK5|GluRgamma2|KA2	glutamate receptor, ionotropic, kainate 5 (gamma 2)	protein-coding	0.050000	0.661692	
mm_64814.1	chr7	7121351	7121551	-	1	NA	NA	NA	25	NM_172738	232853	Mm.23838	NM_172738	ENSMUSG00000062116	Zfp954	5730403M16Rik|8030437F07|AA123315	zinc finger protein 954	protein-coding	0.060000	0.532338	
mm_150382.1	chr19	36348199	36348399	+	1	NA	NA	NA	-30768	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.135000	0.721393	
mm_10634.1	chr2	20209564	20209764	+	1	NA	NA	NA	-80249	NM_001081006	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.010000	0.512438	
mm_28044.1	chr3	83980799	83980999	-	1	NA	NA	NA	59262	NM_172681	229473	Mm.28838	NM_172681	ENSMUSG00000033767	D930015E06Rik	Kiaa0922|mKIAA0922	RIKEN cDNA D930015E06 gene	protein-coding	0.005000	0.398010	
mm_53247.1	chr6	127577871	127578071	+	1	NA	NA	NA	-4	NM_001033464	381812	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0.020000	0.562189	-50(GCTTATCAAGGC,+,0.00)
mm_143352.1	chr17	67125853	67126053	-	1	NA	NA	NA	-99718	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.010000	0.393035	
mm_157213.1	chrX	12954620	12954820	-	1	NA	NA	NA	17847	NM_001272033	245350	Mm.302695	NM_001272033		AA414768	OTTMUSG00000017000	expressed sequence AA414768	protein-coding	0.010000	0.398010	
mm_110227.1	chr12	28750350	28750550	-	1	NA	NA	NA	3	NM_001161411	217449	Mm.132006	NM_178811	ENSMUSG00000020628	Trappc12	CGI-87|D930014A20Rik|Ttc15	trafficking protein particle complex 12	protein-coding	0.090000	0.616915	
mm_34992.1	chr4	156029658	156029858	+	1	NA	NA	NA	3416	NM_021985	21936	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	0.020000	0.472637	
mm_117850.1	chr13	98695469	98695669	-	1	NA	NA	NA	-738	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.010000	0.507463	
mm_132542.1	chr16	37882419	37882619	+	1	NA	NA	NA	14119	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.080000	0.567164	
mm_48230.1	chr5	137684597	137684797	-	1	NA	NA	NA	56	NM_001303271	231801	Mm.260869	NM_145566	ENSMUSG00000029722	Agfg2	A630095P14Rik|Hrbl|RAB-R|RABR	ArfGAP with FG repeats 2	protein-coding	0.100000	0.646766	
mm_139658.1	chr17	57402764	57402964	+	1	NA	NA	NA	44178	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.323383	
mm_145213.1	chr18	50031210	50031410	+	1	NA	NA	NA	-21972	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.055000	0.522388	
mm_121653.1	chr14	10453319	10453519	-	1	NA	NA	NA	39	NM_001308286	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.015000	0.537313	
mm_17728.1	chr2	32451274	32451474	-	1	NA	NA	NA	96	NM_001164357	227731	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.150000	0.771144	
mm_19038.1	chr2	76977068	76977268	-	1	NA	NA	NA	5379	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.050000	0.542289	
mm_87829.1	chr10	60358384	60358584	+	1	NA	NA	NA	11633	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.005000	0.402985	
mm_70612.1	chr8	13425386	13425586	+	1	NA	NA	NA	-9973	NM_001143671	272465	Mm.250502	NM_001143671	ENSMUSG00000038457	Tmem255b	Fam70b|Gm687	transmembrane protein 255B	protein-coding	0.010000	0.517413	
mm_12515.1	chr2	72054849	72055049	+	1	NA	NA	NA	332	NM_001204166	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.020000	0.517413	
mm_26653.1	chr3	154596581	154596781	+	1	NA	NA	NA	-30	NM_009968	12972	Mm.374855	NM_009968	ENSMUSG00000028199	Cryz	Sez9	crystallin, zeta	protein-coding	0.070000	0.582090	
mm_142489.1	chr17	45757854	45758054	-	1	NA	NA	NA	-24110	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0.030000	0.482587	
mm_9031.1	chr1	166506093	166506293	-	1	NA	NA	NA	-8605	NM_001164306	226601	Mm.475593	NM_001164306	ENSMUSG00000086056	Gm4846	EG226601|Fmo13	predicted gene 4846	protein-coding	0.005000	0.447761	
mm_91402.1	chr10	30837802	30838002	-	1	NA	NA	NA	4881	NM_013904	15214	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	0.005000	0.402985	
mm_96170.1	chr11	61488354	61488554	+	1	NA	NA	NA	3010	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.010000	0.512438	
mm_108637.1	chr12	85746489	85746689	+	1	NA	NA	NA	50	NM_145447	217721	Mm.301076	NM_145447	ENSMUSG00000034258	Mfsd7c	CCT|Flvcr2	major facilitator superfamily domain containing 7C	protein-coding	0.090000	0.676617	
mm_70613.1	chr8	13435047	13435247	+	1	NA	NA	NA	-312	NM_001143671	272465	Mm.250502	NM_001143671	ENSMUSG00000038457	Tmem255b	Fam70b|Gm687	transmembrane protein 255B	protein-coding	0.030000	0.582090	
mm_92040.1	chr10	62494751	62494951	-	1	NA	NA	NA	-8046	NM_133672	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.015000	0.363184	
mm_73973.1	chr8	120522376	120522576	+	1	NA	NA	NA	-13381	NM_001145897	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.015000	0.477612	
mm_65655.1	chr7	28137014	28137214	-	1	NA	NA	NA	7648	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.030000	0.577114	
mm_120295.1	chr14	63138298	63138498	+	1	NA	NA	NA	15936	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.020000	0.547264	
mm_37633.1	chr4	127358056	127358256	-	1	NA	NA	NA	8	NM_010291	14622	Mm.26859	NM_010291	ENSMUSG00000042357	Gjb5	Cnx31.1|Cx31.1|Gjb-5	gap junction protein, beta 5	protein-coding	0.010000	0.567164	
mm_110864.1	chr12	73546278	73546478	-	1	NA	NA	NA	17	NM_178715	238257	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	0.135000	0.771144	
mm_11029.1	chr2	26912432	26912632	+	1	NA	NA	NA	1725	NM_013721	27176	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	0.000000	0.467662	
mm_96072.1	chr11	59839304	59839504	+	1	NA	NA	NA	363	NM_011991	26572	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	0.065000	0.666667	
mm_90666.1	chr10	128821692	128821892	+	1	NA	NA	NA	21	NM_025364	66118	Mm.235562	NM_025364	ENSMUSG00000078427	Sarnp	1110005A23Rik|Cip29	SAP domain containing ribonucleoprotein	protein-coding	0.065000	0.577114	-31(CTTTTTAGAGAG,+,0.00)
mm_4475.1	chr1	173420460	173420660	+	1	NA	NA	NA	-44	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.015000	0.512438	
mm_63889.1	chr7	138555124	138555324	+	1	NA	NA	NA	982	NR_131022	75187	Mm.410810	NR_131022	ENSMUSG00000110037	4930543N07Rik	-	RIKEN cDNA 4930543N07 gene	ncRNA	0.005000	0.507463	
mm_34901.1	chr4	155638449	155638649	+	1	NA	NA	NA	13680	NM_007661	12537	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	0.030000	0.562189	
mm_163186.1	chr11	94317578	94317778	-	1	NA	NA	NA	4233	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.015000	0.383085	
mm_21797.1	chr2	164859710	164859910	-	1	NA	NA	NA	-2102	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.025000	0.532338	
mm_83632.1	chr9	49410744	49410944	-	1	NA	NA	NA	16177	NM_172922	244859	Mm.119994	NM_172922	ENSMUSG00000032257	Ankk1	9930020N01Rik	ankyrin repeat and kinase domain containing 1	protein-coding	0.015000	0.487562	
mm_51473.1	chr6	82998730	82998930	+	1	NA	NA	NA	34641	NM_010070	13448	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.040000	0.417910	
mm_59198.1	chr7	24506976	24507176	+	1	NA	NA	NA	-11	NM_001290461	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.095000	0.606965	23(CTATTTATAAGG,-,0.00)
mm_5026.1	chr1	193187182	193187382	+	1	NA	NA	NA	13705	NM_181048	319266	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	0.000000	0.497512	
mm_88249.1	chr10	72673896	72674096	+	1	NA	NA	NA	19150	NM_001293683	52696	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	0.005000	0.412935	
mm_139760.1	chr17	64600652	64600852	+	1	NA	NA	NA	-897	NM_008549	17158	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.140000	0.786070	
mm_136403.1	chr16	93603959	93604159	-	1	NA	NA	NA	-244	NM_145482	224440	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	0.100000	0.626866	
mm_59265.1	chr7	24897403	24897603	+	1	NA	NA	NA	-8	NM_007655	12518	Mm.1355	NM_007655	ENSMUSG00000003379	Cd79a	Ig-alpha|Iga|Igalpha|Ly-54|Ly54|mb-1	CD79A antigen (immunoglobulin-associated alpha)	protein-coding	0.035000	0.577114	
mm_83.1	chr1	6916435	6916635	+	1	NA	NA	NA	-172385	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.055000	0.512438	
mm_25674.1	chr3	122000065	122000265	+	1	NA	NA	NA	-44295	NM_007378	11304	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0.000000	0.527363	
mm_57710.1	chr6	128622739	128622939	-	1	NA	NA	NA	95	NM_001159902	17057	Mm.16729	NM_010737	ENSMUSG00000030361	Klrb1a	Ly55a|NKR-P1.7|NKR-P1A|NKRP12|Nkrp1-a|Nkrp1a|ly-55A	killer cell lectin-like receptor subfamily B member 1A	protein-coding	0.000000	0.537313	
mm_148434.1	chr19	3943409	3943609	+	1	NA	NA	NA	8323	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.055000	0.597015	
mm_138989.1	chr17	45519285	45519485	+	1	NA	NA	NA	-4049	NM_013688	21645	Mm.491193	NM_013688	ENSMUSG00000023949	Tcte1	D17Sil1|Tcte-1	t-complex-associated testis expressed 1	protein-coding	0.005000	0.562189	20(GCATTTATAGAG,+,0.00)
mm_4397.1	chr1	172370593	172370793	+	1	NA	NA	NA	-5838	NM_026234	67556	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	0.010000	0.467662	
mm_167808.1	chr9	123928834	123929034	+	1	NA	NA	NA	39758	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.015000	0.472637	
mm_116155.1	chr13	30532451	30532651	-	1	NA	NA	NA	12765	NM_025710	66694	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0.005000	0.333333	
mm_77306.1	chr8	117480068	117480268	-	1	NA	NA	NA	-18107	NM_172285	234779	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.030000	0.482587	-75(GAGTATAAATAG,-,0.00)
mm_66764.1	chr7	46728727	46728927	-	1	NA	NA	NA	3776	NM_011316	20211	Mm.3489	NM_011316	ENSMUSG00000040017	Saa4	Saa-4|Saa-5	serum amyloid A 4	protein-coding	0.010000	0.467662	
mm_122363.1	chr14	39244009	39244209	-	1	NA	NA	NA	-228320	NR_131973	432842	Mm.352566	NR_131973		LOC432842	-	uncharacterized LOC432842	ncRNA	0.000000	0.442786	
mm_116301.1	chr13	36726430	36726630	-	1	NA	NA	NA	7947	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.040000	0.477612	
mm_35748.1	chr4	45489153	45489353	-	1	NA	NA	NA	41575	NM_001033306	230126	Mm.251716	NM_001033306	ENSMUSG00000044813	Shb	BC028832	src homology 2 domain-containing transforming protein B	protein-coding	0.020000	0.601990	
mm_63712.1	chr7	130692608	130692808	+	1	NA	NA	NA	152	NM_021314	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.110000	0.716418	
mm_127303.1	chr15	100227746	100227946	+	1	NA	NA	NA	-13	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.155000	0.781095	
mm_172966.1	chr9	88858704	88858904	-	1	NA	NA	NA	-3	NR_037982	319673	Mm.149040	NR_037982	ENSMUSG00000097177	9330159M07Rik	1700096K11Rik|mU50hg-a	RIKEN cDNA 9330159M07 gene	ncRNA	0.055000	0.577114	-33(AACTATAAAGGG,-,0.00),5(TCTTTTAGGCCG,+,0.00)
mm_132878.1	chr16	48786508	48786708	+	1	NA	NA	NA	-14652	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.005000	0.422886	
mm_171109.1	chr3	135769579	135769779	-	1	NA	NA	NA	-55600	NM_026228	67547	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.045000	0.472637	
mm_124583.1	chr14	124677420	124677620	-	1	NA	NA	NA	-393	NM_207667	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.030000	0.547264	
mm_65753.1	chr7	28576573	28576773	-	1	NA	NA	NA	-15689	NR_106016	102466795		NR_106016	ENSMUSG00000098558	Mir7049	Gm27277|mmu-mir-7049	microRNA 7049	ncRNA	0.015000	0.626866	
mm_101947.1	chr11	50224537	50224737	-	1	NA	NA	NA	-698	NM_145926	103534	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0.050000	0.567164	
mm_75614.1	chr8	62547763	62547963	-	1	NA	NA	NA	-403369	NM_001252620	72902	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding	0.025000	0.457711	
mm_40405.1	chr5	53049051	53049251	+	1	NA	NA	NA	-202	NM_011402	20531	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	0.100000	0.711443	
mm_155116.1	chrX	48623706	48623906	+	1	NA	NA	NA	132	NM_001166450	20523	Mm.34953	NM_011398	ENSMUSG00000031105	Slc25a14	BMCP1|UCP5|UCP5L|UCP5S	solute carrier family 25 (mitochondrial carrier, brain), member 14	protein-coding	0.090000	0.666667	
mm_36060.1	chr4	57689347	57689547	-	1	NA	NA	NA	121199	NM_172868	242481	Mm.331630	NM_172868	ENSMUSG00000090053	Palm2	53-H12|B130066I24|R75368|pEN70	paralemmin 2	protein-coding	0.005000	0.512438	
mm_61053.1	chr7	49910137	49910337	+	1	NA	NA	NA	-62	NM_001146013	104245	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	0.040000	0.482587	-60(CCCTTTAAAATC,+,0.00),-59(CCTTTAAAATCC,+,0.00)
mm_100857.1	chr11	5863885	5864085	-	1	NA	NA	NA	2119	NM_001291857	11568	Mm.3317	NM_009636	ENSMUSG00000020473	Aebp1	ACLP	AE binding protein 1	protein-coding	0.000000	0.507463	
mm_93735.1	chr10	120112853	120113053	-	1	NA	NA	NA	12	NM_080446	117599	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.075000	0.601990	
mm_143322.1	chr17	66346458	66346658	-	1	NA	NA	NA	103192	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.030000	0.582090	70(CACCTTTAAGGG,-,0.00),72(CCTTTAAGGGAT,+,0.00)
mm_97896.1	chr11	83355157	83355357	+	1	NA	NA	NA	52560	NM_001035854	71770	Mm.39053	NM_027915	ENSMUSG00000035152	Ap2b1	1300012O03Rik|AI788979	adaptor-related protein complex 2, beta 1 subunit	protein-coding	0.015000	0.472637	
mm_34857.1	chr4	155536699	155536899	+	1	NA	NA	NA	-25593	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.005000	0.338308	68(TCTTAAAAAGCA,+,0.00)
mm_23571.1	chr3	63296085	63296285	+	1	NA	NA	NA	90	NM_001289463	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.035000	0.601990	
mm_34980.1	chr4	156014213	156014413	+	1	NA	NA	NA	618	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.020000	0.507463	
mm_8433.1	chr1	152624981	152625181	-	1	NA	NA	NA	136	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.135000	0.681592	
mm_42401.1	chr5	114968699	114968899	+	1	NA	NA	NA	2263	NM_009327	21405	Mm.332607	NM_009327	ENSMUSG00000029556	Hnf1a	AI323641|HNF1|HNF1-alpha|HNF1[a]|Hnf-1|Hnf1alpha|LFB1|Tcf-1|Tcf1	HNF1 homeobox A	protein-coding	0.015000	0.522388	
mm_111911.1	chr12	108794096	108794296	-	1	NA	NA	NA	885	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.130000	0.681592	
mm_82139.1	chr9	123767129	123767329	+	1	NA	NA	NA	18	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.010000	0.567164	
mm_70775.1	chr8	22192728	22192928	+	1	NA	NA	NA	-32	NM_027338	70160	Mm.41453	NM_027338	ENSMUSG00000031479	Vps36	1700010A24Rik|2210415M20Rik|2810408E15Rik|Eap45	vacuolar protein sorting 36	protein-coding	0.120000	0.746269	
mm_121169.1	chr14	103014409	103014609	+	1	NA	NA	NA	19294	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.000000	0.427861	
mm_68741.1	chr7	121064149	121064349	-	1	NA	NA	NA	10281	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.000000	0.412935	
mm_106360.1	chr11	118393761	118393961	-	1	NA	NA	NA	8070	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.030000	0.582090	
mm_23138.1	chr3	38885619	38885819	+	1	NA	NA	NA	-1221	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.105000	0.716418	
mm_132256.1	chr16	32752506	32752706	+	1	NA	NA	NA	16720	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.000000	0.482587	
mm_152890.1	chr19	24861713	24861913	-	1	NA	NA	NA	29	NM_175013	226041	Mm.105222	NM_175013	ENSMUSG00000041731	Pgm5	4833423B07|9530034F03Rik|D830025G17|aciculin	phosphoglucomutase 5	protein-coding	0.115000	0.786070	
mm_34145.1	chr4	139338192	139338392	+	1	NA	NA	NA	14284	NM_001290810	69902	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	0.130000	0.721393	
mm_74865.1	chr8	24950742	24950942	-	1	NA	NA	NA	-2038	NM_153397	353188	Mm.269223	NM_153397	ENSMUSG00000037437	Adam32	-	a disintegrin and metallopeptidase domain 32	protein-coding	0.005000	0.358209	-97(CTTTATATAGCT,+,0.00)
mm_111121.1	chr12	80968693	80968893	-	1	NA	NA	NA	-714	NM_001177561	20493	Mm.486361	NM_011387	ENSMUSG00000021135	Slc10a1	Ntcp	solute carrier family 10 (sodium/bile acid cotransporter family), member 1	protein-coding	0.000000	0.407960	-41(CTTTATATATGG,+,0.00)
mm_104474.1	chr11	95356716	95356916	-	1	NA	NA	NA	19798	NM_172543	215512	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0.020000	0.542289	
mm_136441.1	chr16	94570689	94570889	-	1	NA	NA	NA	-118	NM_001113389	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.090000	0.731343	
mm_88557.1	chr10	79496860	79497060	+	1	NA	NA	NA	28002	NM_001104537	625029	Mm.469865	NM_001104537	ENSMUSG00000091381	Vmn2r83	EG625029	vomeronasal 2, receptor 83	protein-coding	0.000000	0.497512	72(CCCTTTATAAAC,+,0.00),72(CCCTTTATAAAC,-,0.00),74(CTTTATAAACAC,+,0.00)
mm_89287.1	chr10	87892315	87892515	+	1	NA	NA	NA	31304	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.000000	0.427861	
mm_30860.1	chr4	30664493	30664693	+	1	NA	NA	NA	-3	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	0.005000	0.412935	
mm_139919.1	chr17	70974091	70974291	+	1	NA	NA	NA	16325	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.010000	0.472637	
mm_76938.1	chr8	105939979	105940179	-	1	NA	NA	NA	-1687	NM_013640	19171	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0.020000	0.557214	
mm_31973.1	chr4	88209702	88209902	+	1	NA	NA	NA	87762	NR_030478	735282		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	0.010000	0.432836	
mm_108144.1	chr12	76255259	76255459	+	1	NA	NA	NA	127	NM_138745	108156	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0.105000	0.681592	
mm_121148.1	chr14	101900072	101900272	+	1	NA	NA	NA	59549	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.025000	0.477612	
mm_108001.1	chr12	73445016	73445216	+	1	NA	NA	NA	-35553	NR_046013	380765	Mm.490476	NR_046013		D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0.005000	0.497512	
mm_140950.1	chr17	24527844	24528044	-	1	NA	NA	NA	-6	NM_001172114	224619	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	0.050000	0.502488	
mm_69966.1	chr7	142376591	142376791	-	1	NA	NA	NA	-2945	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.025000	0.527363	
mm_35973.1	chr4	53159793	53159993	-	1	NA	NA	NA	2	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.120000	0.666667	-34(ATCTATAAAAGG,-,0.00)
mm_146402.1	chr18	82914551	82914751	+	1	NA	NA	NA	19	NM_001177464	329003	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.115000	0.721393	
mm_59084.1	chr7	19689494	19689694	+	1	NA	NA	NA	3065	NM_001110009	11812	Mm.182440	NM_007469	ENSMUSG00000040564	Apoc1	Apo-CIB|ApoC-IB|apo-CI|apoC-I	apolipoprotein C-I	protein-coding	0.040000	0.552239	
mm_91840.1	chr10	57528822	57529022	-	1	NA	NA	NA	3607	NM_019760	56442	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	0.000000	0.398010	
mm_77252.1	chr8	115705892	115706092	-	1	NA	NA	NA	902	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.075000	0.616915	
mm_24292.1	chr3	89266474	89266674	+	1	NA	NA	NA	113	NM_026767	68563	Mm.272927	NM_026767	ENSMUSG00000042737	Dpm3	1110001H19Rik|AV117483	dolichyl-phosphate mannosyltransferase polypeptide 3	protein-coding	0.070000	0.567164	
mm_157804.1	chrX	73930426	73930626	-	1	NA	NA	NA	324	NM_023132	19703	Mm.236969	NM_023132	ENSMUSG00000031387	Renbp	Age|Rnbp	renin binding protein	protein-coding	0.025000	0.542289	
mm_110633.1	chr12	57545902	57546102	-	1	NA	NA	NA	119	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.160000	0.751244	
mm_138487.1	chr17	35200194	35200394	+	1	NA	NA	NA	1713	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.020000	0.577114	
mm_101269.1	chr11	21365788	21365988	-	1	NA	NA	NA	4741	NM_139297	216558	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0.000000	0.278607	
mm_169766.1	chr15	99802068	99802268	-	1	NA	NA	NA	17981	NM_023063	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.040000	0.517413	
mm_52578.1	chr6	116439989	116440189	+	1	NA	NA	NA	21089	NM_009662	11689	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0.005000	0.447761	-33(CTCTATAAAGGG,+,0.00),-33(CTCTATAAAGGG,-,0.00)
mm_89907.1	chr10	111165670	111165870	+	1	NA	NA	NA	968	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.040000	0.462687	
mm_5662.1	chr1	42693006	42693206	-	1	NA	NA	NA	1719	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.015000	0.363184	
mm_8283.1	chr1	140105354	140105554	-	1	NA	NA	NA	77957	NM_009888	12628	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0.015000	0.407960	
mm_8869.1	chr1	162859610	162859810	-	1	NA	NA	NA	290	NM_001330291	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.020000	0.482587	
mm_90802.1	chr10	7663491	7663691	-	1	NA	NA	NA	-7	NM_008786	18537	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	0.095000	0.641791	
mm_126029.1	chr15	76710538	76710738	+	1	NA	NA	NA	-79	NM_058214	79456	Mm.18373	NM_058214	ENSMUSG00000033762	Recql4	RecQ4	RecQ protein-like 4	protein-coding	0.110000	0.721393	
mm_43789.1	chr5	142655919	142656119	+	1	NA	NA	NA	26435	NM_178398	74781	Mm.29432	NM_178398	ENSMUSG00000029578	Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding	0.015000	0.537313	
mm_21843.1	chr2	165841719	165841919	-	1	NA	NA	NA	16354	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.015000	0.492537	14(AGCCTTTAAAGC,-,0.00),15(GCCTTTAAAGCT,+,0.00),16(CCTTTAAAGCTA,+,0.00)
mm_745.1	chr1	43532280	43532480	+	1	NA	NA	NA	86629	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.015000	0.447761	
mm_39246.1	chr5	3474850	3475050	+	1	NA	NA	NA	-68883	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.010000	0.407960	
mm_17421.1	chr2	27426506	27426706	-	1	NA	NA	NA	1002	NR_133905	22325	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.155000	0.805970	
mm_159055.1	chr1	190924809	190925009	+	1	NA	NA	NA	-199	NM_001199020	52477	Mm.289914	NM_021421	ENSMUSG00000026634	Angel2	2610307I21Rik|5730410O10Rik|AI845692|D1Ertd396e|D1Ertd654e	angel homolog 2	protein-coding	0.010000	0.388060	-36(GCGCCTATAAGA,-,0.00),-34(GCCTATAAGAGG,-,0.00)
mm_112438.1	chr13	5789511	5789711	+	1	NA	NA	NA	68481	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.005000	0.422886	
mm_75558.1	chr8	57796485	57796685	-	1	NA	NA	NA	-143530	NM_144731	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0.045000	0.472637	-100(TCTTTAAAACAG,+,0.00)
mm_23350.1	chr3	54766385	54766585	+	1	NA	NA	NA	10903	NM_019483	55994	Mm.244353	NM_019483	ENSMUSG00000027796	Smad9	MADH6|Madh8|Madh9|Smad8	SMAD family member 9	protein-coding	0.035000	0.398010	
mm_63234.1	chr7	126487267	126487467	+	1	NA	NA	NA	12	NM_001163713	233870	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	0.080000	0.621891	
mm_118604.1	chr14	20794165	20794365	+	1	NA	NA	NA	-177	NM_178597	12325	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	0.075000	0.726368	
mm_82863.1	chr9	31913375	31913575	-	1	NA	NA	NA	-190	NM_013800	12023	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.120000	0.711443	
mm_88672.1	chr10	80017848	80018048	+	1	NA	NA	NA	1033	NM_001347074	70719	Mm.243954	NM_027521	ENSMUSG00000035697	Hmha1	6330406L22Rik|AW539505|Ha-1	histocompatibility (minor) HA-1	protein-coding	0.045000	0.641791	
mm_163248.1	chr11	106751012	106751212	-	1	NA	NA	NA	-114	NM_001271375	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.020000	0.447761	
mm_40794.1	chr5	67607903	67608103	+	1	NA	NA	NA	120	NM_001033415	330096	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.100000	0.671642	
mm_70087.1	chr7	142655598	142655798	-	1	NA	NA	NA	-702	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.055000	0.587065	
mm_147105.1	chr18	35662052	35662252	-	1	NA	NA	NA	34	NM_029485	71242	Mm.151498	NM_027733	ENSMUSG00000024352	Spata24	2700012K08Rik|4930583E11Rik|5133400G04Rik|AU016220|TIPT|TIPT2	spermatogenesis associated 24	protein-coding	0.095000	0.646766	
mm_150888.1	chr19	45235508	45235708	+	1	NA	NA	NA	-372	NM_010691	16814	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox homolog 1 (Drosophila)	protein-coding	0.110000	0.666667	-66(TGCTATTTAAAG,-,0.00)
mm_108394.1	chr12	80948653	80948853	+	1	NA	NA	NA	3254	NM_001347415	20384	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0.000000	0.238806	13(GTCTTTAAAGGA,-,0.00)
mm_118303.1	chr13	113098246	113098446	-	1	NA	NA	NA	2635	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.015000	0.472637	
mm_153714.1	chr19	44400190	44400390	-	1	NA	NA	NA	7419	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.050000	0.562189	
mm_28997.1	chr3	101538841	101539041	-	1	NA	NA	NA	65766	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.005000	0.542289	
mm_123042.1	chr14	55589894	55590094	-	1	NA	NA	NA	1027	NM_011190	19188	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	0.025000	0.557214	
mm_146460.1	chr18	86601894	86602094	+	1	NA	NA	NA	-109116	NM_001302356	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.020000	0.547264	
mm_91974.1	chr10	61452326	61452526	-	1	NA	NA	NA	243	NM_010124	13688	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	0.115000	0.716418	
mm_42169.1	chr5	112261548	112261748	+	1	NA	NA	NA	5828	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.020000	0.502488	
mm_98891.1	chr11	97838319	97838519	+	1	NA	NA	NA	-2361	NM_001080935	68127	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0.025000	0.502488	
mm_61456.1	chr7	75586334	75586534	+	1	NA	NA	NA	130900	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.025000	0.547264	
mm_75509.1	chr8	54523058	54523258	-	1	NA	NA	NA	6840	NM_029701	76687	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.015000	0.343284	
mm_4810.1	chr1	185356551	185356751	+	1	NA	NA	NA	-6444	NM_029735	107508	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	0.020000	0.437811	
mm_75713.1	chr8	68905625	68905825	-	1	NA	NA	NA	25170	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.348259	
mm_37230.1	chr4	117964657	117964857	-	1	NA	NA	NA	-34994	NM_001284192	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.025000	0.532338	
mm_153970.1	chr19	47857949	47858149	-	1	NA	NA	NA	3076	NM_010362	14873	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0.020000	0.477612	
mm_98266.1	chr11	88973845	88974045	+	1	NA	NA	NA	10	NM_016706	12812	Mm.268004	NM_016706	ENSMUSG00000033983	Coil	C79982|Cln80|p80|p80-coilin	coilin	protein-coding	0.100000	0.666667	
mm_165536.1	chr2	180381089	180381289	-	1	NA	NA	NA	-4415	NR_045331	622283	Mm.447602	NR_045331		Mir1a-1hg	EG622283|Gm6307	Mir1a-1 and Mir133a-2 host gene	ncRNA	0.005000	0.547264	
mm_69395.1	chr7	132154589	132154789	-	1	NA	NA	NA	52	NM_018867	55987	Mm.471654	NM_018867	ENSMUSG00000030862	Cpxm2	4632435C11Rik|CPX-2|Cpx2	carboxypeptidase X 2 (M14 family)	protein-coding	0.115000	0.776119	
mm_115917.1	chr13	23530857	23531057	-	1	NA	NA	NA	-87	NM_153173	69386	Mm.158272	NM_153173	ENSMUSG00000060981	Hist1h4h	1700024H08Rik	histone cluster 1, H4h	protein-coding	0.045000	0.502488	
mm_124422.1	chr14	118132647	118132847	-	1	NA	NA	NA	18	NM_029578	76355	Mm.251537	NM_029578	ENSMUSG00000022130	Tgds	2610017J16Rik|2610025M23Rik|AI648925	TDP-glucose 4,6-dehydratase	protein-coding	0.110000	0.646766	
mm_97118.1	chr11	74830814	74831014	+	1	NA	NA	NA	-10	NM_010813	17428	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.120000	0.746269	
mm_57010.1	chr6	121130958	121131158	-	1	NA	NA	NA	-36	NM_001270475	194401	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0.060000	0.606965	
mm_126443.1	chr15	80671745	80671945	+	1	NA	NA	NA	-2	NM_145986	213956	Mm.132439	NM_145986	ENSMUSG00000022408	Fam83f	AW544981	family with sequence similarity 83, member F	protein-coding	0.135000	0.791045	
mm_74073.1	chr8	122438137	122438337	+	1	NA	NA	NA	5185	NM_138656	192156	Mm.28146	NM_138656	ENSMUSG00000006517	Mvd	C78718|Mpd	mevalonate (diphospho) decarboxylase	protein-coding	0.005000	0.562189	
mm_2697.1	chr1	127783489	127783689	+	1	NA	NA	NA	9425	NM_028399	72949	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	0.005000	0.378109	
mm_113739.1	chr13	44678458	44678658	+	1	NA	NA	NA	-52216	NM_021878	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.000000	0.452736	
mm_140749.1	chr17	16669676	16669876	-	1	NA	NA	NA	-394327	NM_001005358	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	0.025000	0.552239	
mm_123265.1	chr14	61325794	61325994	-	1	NA	NA	NA	16141	NM_177337	219144	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	0.030000	0.442786	-27(GCTTTTAAGCCT,+,0.00)
mm_153723.1	chr19	44407394	44407594	-	1	NA	NA	NA	215	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.060000	0.601990	-100(CCCTTTAAAATC,+,0.00),-99(CCTTTAAAATCC,+,0.00)
mm_90708.1	chr10	3267630	3267830	-	1	NA	NA	NA	41	NM_001204916	670558	Mm.398582	NM_001204916	ENSMUSG00000091618	H60c	4632413I24Rik|Gm9491	histocompatibility 60c	protein-coding	0.015000	0.547264	
mm_62999.1	chr7	120739921	120740121	+	1	NA	NA	NA	464	NM_177697	233813	Mm.389939	NM_177697	ENSMUSG00000030889	Vwa3a	E030013G06Rik	von Willebrand factor A domain containing 3A	protein-coding	0.010000	0.522388	
mm_33008.1	chr4	120666839	120667039	+	1	NA	NA	NA	376	NM_019563	56222	Mm.272646	NM_019563	ENSMUSG00000070803	Cited4	MRG-2|Mrg2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4	protein-coding	0.130000	0.756219	
mm_9962.1	chr1	191111865	191112065	-	1	NA	NA	NA	13551	NM_030060	381319	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.015000	0.552239	
mm_24078.1	chr3	87930458	87930658	+	1	NA	NA	NA	244	NM_177663	229504	Mm.45744	NM_177663	ENSMUSG00000048039	Isg20l2	4930429N24|C80587	interferon stimulated exonuclease gene 20-like 2	protein-coding	0.140000	0.661692	
mm_138808.1	chr17	39846254	39846454	+	1	NA	NA	NA	3357	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.085000	0.601990	
mm_103221.1	chr11	70656387	70656587	-	1	NA	NA	NA	-689	NM_001136062	13808	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.045000	0.497512	
mm_82576.1	chr9	21131137	21131337	-	1	NA	NA	NA	38	NM_018793	54721	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.065000	0.641791	
mm_128864.1	chr15	72809932	72810132	-	1	NA	NA	NA	292	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.085000	0.631841	65(GTCTCTAAAGAC,-,0.00)
mm_31131.1	chr4	43209150	43209350	+	1	NA	NA	NA	-57909	NM_177195	320571	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	0.020000	0.567164	
mm_28594.1	chr3	94472764	94472964	-	1	NA	NA	NA	727	NM_025506	66353	Mm.46405	NM_025506	ENSMUSG00000028139	Riiad1	2310007A19Rik|Ncrna00166	regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1	protein-coding	0.075000	0.582090	
mm_150981.1	chr19	46511056	46511256	+	1	NA	NA	NA	9508	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.015000	0.467662	
mm_62665.1	chr7	108937979	108938179	+	1	NA	NA	NA	3664	NM_025344	66085	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0.015000	0.457711	
mm_126450.1	chr15	80798540	80798740	+	1	NA	NA	NA	30	NM_177124	213988	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.025000	0.422886	-54(TCCTTTAGAGAC,+,0.00)
mm_72907.1	chr8	90908509	90908709	+	1	NA	NA	NA	-23640	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.135000	0.810945	
mm_19209.1	chr2	84531275	84531475	-	1	NA	NA	NA	-24502	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	0.010000	0.522388	
mm_65089.1	chr7	19264376	19264576	-	1	NA	NA	NA	7378	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.030000	0.562189	
mm_45429.1	chr5	67098954	67099154	-	1	NA	NA	NA	72	NM_008888	18935	Mm.62505	NM_008888	ENSMUSG00000012520	Phox2b	Dilp1|NBPhox|Pmx2b|Px2b	paired-like homeobox 2b	protein-coding	0.015000	0.492537	
mm_68951.1	chr7	126564371	126564571	-	1	NA	NA	NA	1895	NM_146200	56347	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.020000	0.512438	
mm_22916.1	chr3	31094624	31094824	+	1	NA	NA	NA	-334	NM_011386	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.165000	0.800995	
mm_106577.1	chr11	120727159	120727359	-	1	NA	NA	NA	22	NM_026428	67880	Mm.231091	NM_026428	ENSMUSG00000039450	Dcxr	0610038K04Rik|1810027P18Rik|XR	dicarbonyl L-xylulose reductase	protein-coding	0.065000	0.611940	-71(CCTTTTCAAGAC,+,0.00)
mm_27927.1	chr3	79552083	79552283	-	1	NA	NA	NA	15496	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.025000	0.542289	
mm_23912.1	chr3	83043320	83043520	+	1	NA	NA	NA	6443	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.025000	0.492537	
mm_92910.1	chr10	83543762	83543962	-	1	NA	NA	NA	-79	NM_001033375	319277	Mm.491194	NM_001033375	ENSMUSG00000034560	Washc4	A230046K03Rik|AA589518|Kiaa1033|mKIAA1033	WASH complex subunit 4	protein-coding	0.115000	0.686567	
mm_153851.1	chr19	46350163	46350363	-	1	NA	NA	NA	-1275	NR_040418	75579	Mm.436708	NR_040418		2310034G01Rik	-	RIKEN cDNA 2310034G01 gene	ncRNA	0.010000	0.512438	
mm_60432.1	chr7	44476742	44476942	+	1	NA	NA	NA	6495	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.417910	
mm_56510.1	chr6	99375929	99376129	-	1	NA	NA	NA	59316	NM_053202	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.025000	0.547264	
mm_84180.1	chr9	60024478	60024678	-	1	NA	NA	NA	73284	NM_001101600	665389	Mm.335214	NM_001101600		Gm7616	EG665389	predicted gene 7616	protein-coding	0.025000	0.417910	
mm_88344.1	chr10	75835876	75836076	+	1	NA	NA	NA	-1095	NM_010361	14872	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.015000	0.437811	
mm_86589.1	chr10	13109292	13109492	+	1	NA	NA	NA	18547	NR_131912	338438		NR_131912		Hymai	-	hydatidiform mole associated and imprinted transcript	ncRNA	0.015000	0.402985	-42(TCCTTTATGGCG,+,0.00),43(GCATTTAAAAGC,+,0.00),43(GCATTTAAAAGC,-,0.00)
mm_102945.1	chr11	69616880	69617080	-	1	NA	NA	NA	925	NM_011367	20415	Mm.1431	NM_011367	ENSMUSG00000005202	Shbg	ABP	sex hormone binding globulin	protein-coding	0.025000	0.547264	
mm_134113.1	chr16	10128444	10128644	-	1	NA	NA	NA	-41684	NM_026594	68172	Mm.23690	NM_026594	ENSMUSG00000039209	Rpl39l	4930517K11Rik	ribosomal protein L39-like	protein-coding	0.000000	0.373134	
mm_40180.1	chr5	36163942	36164142	+	1	NA	NA	NA	-39979	NM_175249	76943	Mm.44242	NM_175249	ENSMUSG00000043430	Psapl1	2310020A21Rik	prosaposin-like 1	protein-coding	0.015000	0.567164	
mm_156106.1	chrX	114284509	114284709	+	1	NA	NA	NA	-189724	NM_001290478	237010	Mm.132583	NM_172781	ENSMUSG00000025597	Klhl4	B130014A11|C130018J01Rik	kelch-like 4	protein-coding	0.005000	0.457711	
mm_151495.1	chr19	58698816	58699016	+	1	NA	NA	NA	-1	NR_038140	69166	Mm.491059	NR_038140	ENSMUSG00000101088	1810018F18Rik	1810031L05Rik|1810047O18Rik	RIKEN cDNA 1810018F18 gene	ncRNA	0.045000	0.512438	-32(ACCTATAAAAGG,-,0.00)
mm_32769.1	chr4	116693854	116694054	+	1	NA	NA	NA	-7932	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.000000	0.437811	
mm_114088.1	chr13	54590661	54590861	+	1	NA	NA	NA	530	NM_025933	67044	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	0.065000	0.621891	
mm_8390.1	chr1	151345115	151345315	-	1	NA	NA	NA	717	NM_001039511	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.100000	0.676617	
mm_109691.1	chr12	113143931	113144131	+	1	NA	NA	NA	3426	NM_001347443	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.040000	0.587065	
mm_141762.1	chr17	34269230	34269430	-	1	NA	NA	NA	6103	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.015000	0.477612	
mm_49738.1	chr6	34745684	34745884	+	1	NA	NA	NA	-34648	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.055000	0.522388	
mm_64252.1	chr7	141704454	141704654	+	1	NA	NA	NA	14214	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.006369	0.424051	
mm_67024.1	chr7	66337535	66337735	-	1	NA	NA	NA	44089	NR_106024	102465640		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.005000	0.373134	
mm_131149.1	chr16	6680640	6680840	+	1	NA	NA	NA	-389095	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.000000	0.338308	-21(CCTTTAATGTAC,+,0.00),89(TCCTCTAAAAGG,-,0.00)
mm_104541.1	chr11	96713317	96713517	-	1	NA	NA	NA	64138	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.030000	0.492537	
mm_33538.1	chr4	130934363	130934563	+	1	NA	NA	NA	-9922	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.010000	0.577114	
mm_144606.1	chr18	32400167	32400367	+	1	NA	NA	NA	-21983	NR_045403	402767	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.015000	0.447761	
mm_10025.1	chr1	192092364	192092564	-	1	NA	NA	NA	135	NM_011633	22033	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.125000	0.701493	
mm_24182.1	chr3	88586795	88586995	+	1	NA	NA	NA	7224	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.025000	0.507463	-56(GCCTTAATAGCT,+,0.00)
mm_10181.1	chr2	4718098	4718298	+	1	NA	NA	NA	367	NM_178663	209645	Mm.149539	NM_178663	ENSMUSG00000048186	Bend7	1110017O21Rik|E130319B15Rik	BEN domain containing 7	protein-coding	0.115000	0.686567	
mm_132492.1	chr16	36934895	36935095	+	1	NA	NA	NA	12	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.020000	0.522388	
mm_65642.1	chr7	27979044	27979244	-	1	NA	NA	NA	13	NM_001081021	338354	Mm.389873	NM_001081021	ENSMUSG00000063047	Zfp780b	B230208L21Rik	zinc finger protein 780B	protein-coding	0.070000	0.552239	
mm_42324.1	chr5	114899853	114900053	+	1	NA	NA	NA	3019	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.015000	0.482587	
mm_71542.1	chr8	47533574	47533774	+	1	NA	NA	NA	29	NM_203507	192174	Mm.273081	NM_203507	ENSMUSG00000031568	Rwdd4a	BC016198|Gm1942|Rwdd4	RWD domain containing 4A	protein-coding	0.075000	0.582090	
mm_139686.1	chr17	57420313	57420513	+	1	NA	NA	NA	61727	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.010000	0.502488	
mm_55312.1	chr6	54992795	54992995	-	1	NA	NA	NA	-28	NM_026637	110175	Mm.294708	NM_026637	ENSMUSG00000002797	Ggct	A030007L17Rik|AA673177|Gctg|Ggc	gamma-glutamyl cyclotransferase	protein-coding	0.100000	0.666667	
mm_52097.1	chr6	97850882	97851082	+	1	NA	NA	NA	43924	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.482587	
mm_134306.1	chr16	15862837	15863037	-	1	NA	NA	NA	385	NM_029354	72083	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	0.065000	0.572139	
mm_172806.1	chr9	120791680	120791880	-	1	NA	NA	NA	123470	NR_040742	76402	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0.025000	0.507463	
mm_66286.1	chr7	37773474	37773674	-	1	NA	NA	NA	-3822	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.080000	0.502488	
mm_173240.1	chrX	86898652	86898852	-	1	NA	NA	NA	-543758	NR_036689	245502	Mm.490821	NR_036689		Gm41	-	melanoma antigen, family B, 4 pseudogene	pseudo	0.005000	0.577114	
mm_85425.1	chr9	103499141	103499341	-	1	NA	NA	NA	-18913	NM_001002896	107993	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding	0.025000	0.641791	
mm_149918.1	chr19	26607104	26607304	+	1	NA	NA	NA	2044	NM_011416	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.090000	0.676617	
mm_7007.1	chr1	86487286	86487486	-	1	NA	NA	NA	-39350	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.090000	0.641791	
mm_7517.1	chr1	124045189	124045389	-	1	NA	NA	NA	270	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.030000	0.611940	
mm_154957.1	chrX	36795531	36795731	+	1	NA	NA	NA	34	NM_007451	11740	Mm.371544	NM_007451	ENSMUSG00000016319	Slc25a5	Ant2	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	protein-coding	0.080000	0.636816	-13(CGCTATATAAGT,-,0.00)
mm_101875.1	chr11	48893290	48893490	-	1	NA	NA	NA	8762	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.005000	0.368159	
mm_120933.1	chr14	76504414	76504614	+	1	NA	NA	NA	4	NM_009366	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.115000	0.726368	-36(GCCTATATGTGG,-,0.00)
mm_61560.1	chr7	79505242	79505442	+	1	NA	NA	NA	78	NR_029818	723968		NR_029818	ENSMUSG00000093238	Mir9-3	Mirn9-3|mir-9-3|mmu-mir-9-3	microRNA 9-3	ncRNA	0.065000	0.601990	
mm_51437.1	chr6	80018877	80019077	+	1	NA	NA	NA	100	NM_001134743	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.010000	0.462687	
mm_109682.1	chr12	113140128	113140328	+	1	NA	NA	NA	-8	NM_024223	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.095000	0.631841	
mm_46728.1	chr5	110770617	110770817	-	1	NA	NA	NA	0	NM_029337	75560	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	0.120000	0.686567	
mm_35380.1	chr4	33246090	33246290	-	1	NA	NA	NA	2597	NM_001033225	108767	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.030000	0.482587	
mm_160540.1	chr9	40984246	40984446	-	1	NA	NA	NA	-20234	NM_001081121	70989	Mm.335087	NM_001081121	ENSMUSG00000032023	Jhy	4931429I11Rik|BB239335	juvenile hydrocephalus	protein-coding	0.010000	0.487562	
mm_126370.1	chr15	80133035	80133235	+	1	NA	NA	NA	-19	NM_025609	66513	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	0.105000	0.726368	
mm_132378.1	chr16	34921411	34921611	+	1	NA	NA	NA	17818	NR_040536	76649	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.030000	0.597015	
mm_2750.1	chr1	128705651	128705851	+	1	NA	NA	NA	-113452	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.000000	0.402985	
mm_70266.1	chr8	3587524	3587724	+	1	NA	NA	NA	174	NM_001347111	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.105000	0.681592	
mm_83310.1	chr9	44046774	44046974	-	1	NA	NA	NA	3490	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.045000	0.532338	
mm_144781.1	chr18	35830232	35830432	+	1	NA	NA	NA	514	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.105000	0.751244	
mm_107501.1	chr12	38867932	38868132	+	1	NA	NA	NA	84321	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.005000	0.338308	89(GTGTTTAAATGG,-,0.00)
mm_141940.1	chr17	35048402	35048602	-	1	NA	NA	NA	-1741	NM_033444	114584	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.025000	0.557214	
mm_151924.1	chr19	5799936	5800136	-	1	NA	NA	NA	2636	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.412935	
mm_28639.1	chr3	95219636	95219836	-	1	NA	NA	NA	-1794	NM_029885	213054	Mm.224820	NM_029885	ENSMUSG00000038766	Gabpb2	1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1	GA repeat binding protein, beta 2	protein-coding	0.000000	0.363184	
mm_105588.1	chr11	106724328	106724528	-	1	NA	NA	NA	-9147	NM_001305157	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.025000	0.532338	
mm_55771.1	chr6	78467759	78467959	-	1	NA	NA	NA	1015	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.010000	0.487562	
mm_37679.1	chr4	129189516	129189716	-	1	NA	NA	NA	111	NM_001347203	74648	Mm.172064	NM_029036	ENSMUSG00000040928	S100pbp	4930429A08Rik|AI851343|S100pbpr	S100P binding protein	protein-coding	0.080000	0.691542	
mm_13381.1	chr2	103904376	103904576	+	1	NA	NA	NA	3525	NR_131913	100996933	Mm.394449	NR_131913		Lincred1	-	long intergenic non-protein coding RNA of erythroid differentiation 1	ncRNA	0.010000	0.517413	
mm_77563.1	chr8	123427743	123427943	-	1	NA	NA	NA	-15113	NM_001253784	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.040000	0.572139	
mm_115387.1	chr13	113209852	113210052	+	1	NA	NA	NA	293	NM_023612	71690	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.040000	0.587065	
mm_165464.1	chr2	162253077	162253277	+	1	NA	NA	NA	-137636	NR_040617	77645	Mm.447752	NR_040617	ENSMUSG00000084919	Ptprtos	C330008G21Rik	protein tyrosine phosphatase, receptor type T, opposite strand	ncRNA	0.000000	0.353234	
mm_168768.1	chr12	13997293	13997493	-	1	NA	NA	NA	154645	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	0.045000	0.601990	
mm_29587.1	chr3	117825992	117826192	-	1	NA	NA	NA	42844	NM_001190156	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.005000	0.318408	
mm_93184.1	chr10	93874974	93875174	-	1	NA	NA	NA	16128	NM_019648	56307	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	0.005000	0.383085	
mm_135295.1	chr16	38599955	38600155	-	1	NA	NA	NA	37241	NM_026407	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.000000	0.492537	
mm_69356.1	chr7	130463738	130463938	-	1	NA	NA	NA	55742	NM_001136054	11907	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0.010000	0.422886	-55(TCCTTTAAAAAA,-,0.00)
mm_1562.1	chr1	74153984	74154184	+	1	NA	NA	NA	90	NM_009909	12765	Mm.234466	NM_009909	ENSMUSG00000026180	Cxcr2	CD128|CDw128|Cmkar2|Gpcr16|IL-8Rh|IL-8rb|IL8RA|Il8rb|mIL-8RH	chemokine (C-X-C motif) receptor 2	protein-coding	0.020000	0.522388	
mm_149221.1	chr19	10018129	10018329	+	1	NA	NA	NA	1	NM_144538	74760	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	0.110000	0.766169	
mm_153864.1	chr19	46619886	46620086	-	1	NA	NA	NA	-3415	NM_001177813	226178	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.010000	0.442786	71(GGCTTTAAGGGG,-,0.00),72(GCTTTAAGGGGT,+,0.00)
mm_32782.1	chr4	116708530	116708730	+	1	NA	NA	NA	-245	NM_025962	67096	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0.065000	0.547264	
mm_21605.1	chr2	164238340	164238540	-	1	NA	NA	NA	-99	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.417910	
mm_164683.1	chr17	47518802	47519002	+	1	NA	NA	NA	13851	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.020000	0.452736	
mm_172205.1	chr6	5476774	5476974	+	1	NA	NA	NA	19404	NM_013743	27273	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.045000	0.527363	-31(GCCTATAAAAGC,-,0.00)
mm_121970.1	chr14	25587574	25587774	-	1	NA	NA	NA	870	NR_033492	77592	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0.020000	0.592040	
mm_10738.1	chr2	23069031	23069231	+	1	NA	NA	NA	59	NM_001102438	74159	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.110000	0.716418	
mm_129292.1	chr15	77203670	77203870	-	1	NA	NA	NA	-49958	NM_001286418	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.010000	0.492537	
mm_29379.1	chr3	108825793	108825993	-	1	NA	NA	NA	14609	NM_011504	20912	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.030000	0.487562	-88(GAGTTTTTAAGC,-,0.00)
mm_80685.1	chr9	91368957	91369157	+	1	NA	NA	NA	85	NM_009576	22774	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.055000	0.507463	
mm_41077.1	chr5	87673956	87674156	+	1	NA	NA	NA	7848	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.005000	0.278607	
mm_133044.1	chr16	57549111	57549311	+	1	NA	NA	NA	-31	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.155000	0.746269	-33(CGCCTTATAAGG,-,0.00),-31(CCTTATAAGGCT,+,0.00)
mm_53291.1	chr6	129014010	129014210	+	1	NA	NA	NA	-2	NM_001277202	435921	Mm.489572	NM_001277202		Clec2f	Clec2f-ps|Clr-c|Clrc|Clrz	C-type lectin domain family 2, member f	protein-coding	0.010000	0.462687	
mm_81531.1	chr9	110064260	110064460	+	1	NA	NA	NA	12339	NM_001311164	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.020000	0.572139	
mm_103884.1	chr11	83573957	83574157	-	1	NA	NA	NA	4579	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.000000	0.353234	-85(GTTTTTATACCA,+,0.00)
mm_131741.1	chr16	22053583	22053783	+	1	NA	NA	NA	44199	NR_027488	75826	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.045000	0.582090	
mm_78086.1	chr9	17556382	17556582	+	1	NA	NA	NA	-735785	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.000000	0.417910	
mm_166676.1	chr6	97311943	97312143	-	1	NA	NA	NA	-59263	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.040000	0.557214	
mm_3231.1	chr1	135849651	135849851	+	1	NA	NA	NA	8890	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.005000	0.462687	
mm_75464.1	chr8	47941460	47941660	-	1	NA	NA	NA	48991	NM_133791	52357	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.005000	0.437811	
mm_54980.1	chr6	48740669	48740869	-	1	NA	NA	NA	1722	NM_008376	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.000000	0.497512	
mm_158787.1	chrX	167207917	167208117	-	1	NA	NA	NA	1201	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.035000	0.487562	
mm_62746.1	chr7	111083119	111083319	+	1	NA	NA	NA	-189	NM_013507	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.135000	0.741294	
mm_63482.1	chr7	127746474	127746674	+	1	NA	NA	NA	-201	NM_172748	233902	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.085000	0.751244	
mm_17558.1	chr2	30133576	30133776	-	1	NA	NA	NA	-70	NM_146252	70296	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0.085000	0.597015	
mm_19228.1	chr2	84670593	84670793	-	1	NA	NA	NA	15	NM_001033166	72657	Mm.259293	NM_001033166	ENSMUSG00000076437	Selenoh	2700094K13Rik|Selh	selenoprotein H	protein-coding	0.075000	0.572139	
mm_26398.1	chr3	142601209	142601409	+	1	NA	NA	NA	6462	NM_010259	14468	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.010000	0.447761	
mm_2518.1	chr1	106318604	106318804	+	1	NA	NA	NA	146835	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.015000	0.452736	23(GTGTATATAGGC,-,0.00)
mm_148661.1	chr19	5567979	5568179	+	1	NA	NA	NA	5	NM_001033448	381201	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0.160000	0.756219	
mm_9472.1	chr1	173334828	173335028	-	1	NA	NA	NA	-1425	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	0.010000	0.557214	
mm_97083.1	chr11	73090479	73090679	+	1	NA	NA	NA	-16	NM_172944	16407	Mm.96	NM_008399	ENSMUSG00000005947	Itgae	A530055J10|CD103|aM290|alpha-E1|alpha-M290	integrin alpha E, epithelial-associated	protein-coding	0.005000	0.557214	
mm_20339.1	chr2	127656062	127656262	-	1	NA	NA	NA	533	NM_010762	17153	Mm.39040	NM_010762	ENSMUSG00000027375	Mal	Mpv17|Vip17	myelin and lymphocyte protein, T cell differentiation protein	protein-coding	0.095000	0.696517	
mm_16970.1	chr2	17731004	17731204	-	1	NA	NA	NA	-36	NM_028757	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0.160000	0.766169	
mm_28645.1	chr3	95228168	95228368	-	1	NA	NA	NA	-156	NM_172395	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.065000	0.616915	
mm_98878.1	chr11	97806509	97806709	+	1	NA	NA	NA	6937	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.005000	0.557214	
mm_18513.1	chr2	62626057	62626257	-	1	NA	NA	NA	20098	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.000000	0.353234	
mm_1751.1	chr1	75507096	75507296	+	1	NA	NA	NA	119	NM_010564	16322	Mm.1100	NM_010564	ENSMUSG00000032968	Inha	AW555078	inhibin alpha	protein-coding	0.020000	0.616915	
mm_126155.1	chr15	78409816	78410016	+	1	NA	NA	NA	2812	NM_138670	246221	Mm.294215	NM_138670	ENSMUSG00000071711	Mpst	Mst	mercaptopyruvate sulfurtransferase	protein-coding	0.040000	0.572139	
mm_167389.1	chr8	94976884	94977084	-	1	NA	NA	NA	-125	NM_001198894	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.020000	0.616915	
mm_4465.1	chr1	173350033	173350233	+	1	NA	NA	NA	-16630	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	0.015000	0.502488	
mm_11949.1	chr2	52938555	52938755	+	1	NA	NA	NA	80787	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.010000	0.447761	
mm_59287.1	chr7	24978252	24978452	+	1	NA	NA	NA	-5624	NM_010261	14470	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.010000	0.597015	
mm_101116.1	chr11	11970447	11970647	-	1	NA	NA	NA	57424	NM_001177629	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.035000	0.522388	
mm_125207.1	chr15	33282046	33282246	+	1	NA	NA	NA	123793	NR_033608	73486	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	0.000000	0.268657	
mm_137258.1	chr17	24550010	24550210	+	1	NA	NA	NA	160	NM_013630	18763	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystic kidney disease 1 homolog	protein-coding	0.110000	0.741294	
mm_147537.1	chr18	53498587	53498787	-	1	NA	NA	NA	34141	NM_001033281	225518	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	0.000000	0.417910	
mm_61104.1	chr7	51887853	51888053	+	1	NA	NA	NA	8986	NM_001330607	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.015000	0.462687	-80(TTGTATAAAAAG,-,0.00)
mm_39515.1	chr5	21256814	21257014	+	1	NA	NA	NA	70647	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.010000	0.388060	
mm_120789.1	chr14	74732881	74733081	+	1	NA	NA	NA	684	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.000000	0.323383	
mm_124033.1	chr14	77031699	77031899	-	1	NA	NA	NA	4818	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding	0.010000	0.482587	
mm_166220.1	chr5	64423069	64423269	-	1	NA	NA	NA	44773	NR_040681	69999	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.025000	0.477612	
mm_93821.1	chr10	121476141	121476341	-	1	NA	NA	NA	9	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.145000	0.815920	
mm_120565.1	chr14	68594196	68594396	+	1	NA	NA	NA	-12224	NM_021475	58860	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0.005000	0.333333	
mm_127125.1	chr15	98108455	98108655	+	1	NA	NA	NA	84	NM_001163487	18642	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	0.045000	0.616915	
mm_21369.1	chr2	157204353	157204553	-	1	NA	NA	NA	81	NM_011249	19650	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	retinoblastoma-like 1 (p107)	protein-coding	0.140000	0.716418	
mm_34873.1	chr4	155562281	155562481	+	1	NA	NA	NA	-11	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.015000	0.492537	
mm_143555.1	chr17	74173757	74173957	-	1	NA	NA	NA	121006	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.000000	0.452736	
mm_59822.1	chr7	29238434	29238634	+	1	NA	NA	NA	211	NM_029887	77254	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	0.100000	0.641791	
mm_25077.1	chr3	99981227	99981427	+	1	NA	NA	NA	95910	NM_028892	74362	Mm.55847	NM_028892	ENSMUSG00000027867	Spag17	4931427F14Rik|PF6|Spag17-ps	sperm associated antigen 17	protein-coding	0.020000	0.402985	
mm_113962.1	chr13	51203111	51203311	+	1	NA	NA	NA	-145	NR_132443	667728		NR_132443		Hist1h2al	EG667728	histone cluster 1, H2al	pseudo	0.000000	0.402985	
mm_142444.1	chr17	45592291	45592491	-	1	NA	NA	NA	2	NM_022880	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.015000	0.641791	
mm_40943.1	chr5	76809935	76810135	+	1	NA	NA	NA	-30564	NM_001163793	320827	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.030000	0.512438	
mm_49715.1	chr6	34476224	34476424	+	1	NA	NA	NA	-32	NM_007563	12183	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	0.070000	0.577114	
mm_32762.1	chr4	116689965	116690165	+	1	NA	NA	NA	-4043	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.000000	0.333333	40(TTGTATAAAGGG,-,0.00)
mm_101167.1	chr11	16973961	16974161	-	1	NA	NA	NA	22651	NM_176982	319701	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.010000	0.412935	
mm_172771.1	chr8	94179094	94179294	+	1	NA	NA	NA	105	NM_013602	17748	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.090000	0.611940	13(GACTATAAAGAG,-,0.00)
mm_62943.1	chr7	119526110	119526310	+	1	NA	NA	NA	-55	NM_178758	272428	Mm.185183	NM_178758	ENSMUSG00000030972	Acsm5	C730019D22|C730027J19Rik	acyl-CoA synthetase medium-chain family member 5	protein-coding	0.005000	0.537313	
mm_91342.1	chr10	26343410	26343610	-	1	NA	NA	NA	30524	NM_001347467	237339	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	l(3)mbt-like 3 (Drosophila)	protein-coding	0.010000	0.378109	-2(TGCCTTAAAAAC,-,0.00),0(CCTTAAAAACCC,+,0.00)
mm_91353.1	chr10	27616800	27617000	-	1	NA	NA	NA	42	NM_008481	16773	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding	0.025000	0.646766	-83(ACCCTTTAAAGG,-,0.00),-82(CCCTTTAAAGGC,+,0.00),-82(CCCTTTAAAGGC,-,0.00),-81(CCTTTAAAGGCC,+,0.00)
mm_112718.1	chr13	19190608	19190808	+	1	NA	NA	NA	205105	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.020000	0.432836	
mm_152819.1	chr19	23136074	23136274	-	1	NA	NA	NA	-5052	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.100000	0.681592	
mm_156247.1	chrX	136271277	136271477	+	1	NA	NA	NA	1124	NM_001110234	12070	Mm.90787	NM_009750	ENSMUSG00000046432	Bex3	AL033356|DXWsu67e|Gcap27|Nade|Ngfrap1	brain expressed X-linked 3	protein-coding	0.030000	0.557214	
mm_150963.1	chr19	46499949	46500149	+	1	NA	NA	NA	-1599	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.085000	0.656716	
mm_14036.1	chr2	122160588	122160788	+	1	NA	NA	NA	-12	NM_080510	70928	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	0.015000	0.462687	
mm_55969.1	chr6	85820904	85821104	-	1	NA	NA	NA	-32	NM_023493	69049	Mm.441449	NM_023493	ENSMUSG00000079494	Nat8f5	1810018F03Rik|Cml5	N-acetyltransferase 8 (GCN5-related) family member 5	protein-coding	0.010000	0.487562	
mm_123092.1	chr14	55783913	55784113	-	1	NA	NA	NA	6	NM_080435	104110	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	0.040000	0.621891	
mm_83546.1	chr9	46235673	46235873	-	1	NA	NA	NA	-137	NM_001289756	11814	Mm.390161	NM_023114	ENSMUSG00000032081	Apoc3	apo-CIII|apoC-III	apolipoprotein C-III	protein-coding	0.015000	0.597015	
mm_60592.1	chr7	44496476	44496676	+	1	NA	NA	NA	-12	NM_028169	75538	Mm.258841	NM_028169	ENSMUSG00000051113	Fam71e1	0610007G24Rik|1700021N13Rik|1700021P22Rik|GARI-L5	family with sequence similarity 71, member E1	protein-coding	0.075000	0.626866	
mm_4444.1	chr1	172548647	172548847	+	1	NA	NA	NA	2059	NR_040558	71319	Mm.123774	NR_040558	ENSMUSG00000085184	4933439K11Rik	-	RIKEN cDNA 4933439K11 gene	ncRNA	0.035000	0.547264	
mm_170144.1	chr17	42876248	42876448	-	1	NA	NA	NA	76	NM_009847	12488	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.145000	0.776119	
mm_23573.1	chr3	63297930	63298130	+	1	NA	NA	NA	1935	NM_001289463	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.025000	0.457711	
mm_108694.1	chr12	86902605	86902805	+	1	NA	NA	NA	-17891	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.005000	0.427861	
mm_50514.1	chr6	49039512	49039712	+	1	NA	NA	NA	3094	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.015000	0.353234	24(ATCTTTAAAAAG,-,0.00),26(CTTTAAAAAGTC,+,0.00)
mm_3898.1	chr1	161704729	161704929	+	1	NA	NA	NA	83666	NM_001205243	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.005000	0.398010	89(GGCTCTAAAAAG,-,0.00)
mm_82020.1	chr9	121747958	121748158	+	1	NA	NA	NA	11885	NR_033503	320301	Mm.373883	NR_033503		E530011L22Rik	-	RIKEN cDNA E530011L22 gene	ncRNA	0.015000	0.442786	
mm_56124.1	chr6	87532887	87533087	-	1	NA	NA	NA	272	NM_001037727	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.030000	0.537313	
mm_1131.1	chr1	60409530	60409730	+	1	NA	NA	NA	11	NM_001198570	329165	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	0.180000	0.796020	
mm_33444.1	chr4	130520640	130520840	+	1	NA	NA	NA	53296	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.030000	0.601990	
mm_25803.1	chr3	127789179	127789379	+	1	NA	NA	NA	-634	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.025000	0.482587	66(CCCTAAATAGAA,+,0.00)
mm_120302.1	chr14	63140373	63140573	+	1	NA	NA	NA	18011	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.005000	0.388060	
mm_35236.1	chr4	19877036	19877236	-	1	NA	NA	NA	45430	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.000000	0.293532	
mm_110125.1	chr12	26444105	26444305	-	1	NA	NA	NA	12247	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.010000	0.417910	
mm_138824.1	chr17	39847724	39847924	+	1	NA	NA	NA	4827	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.085000	0.582090	
mm_8595.1	chr1	156029681	156029881	-	1	NA	NA	NA	5036	NM_001160019	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.020000	0.452736	
mm_158573.1	chrX	150589754	150589954	-	1	NA	NA	NA	-67	NM_008824	18639	Mm.249131	NM_008824	ENSMUSG00000025271	Pfkfb1	PFK/FBPase 1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	protein-coding	0.005000	0.462687	
mm_52293.1	chr6	108668474	108668674	+	1	NA	NA	NA	-7640	NR_104577	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.090000	0.616915	
mm_82174.1	chr9	123851166	123851366	+	1	NA	NA	NA	395	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.025000	0.502488	
mm_167464.1	chr8	124585228	124585428	+	1	NA	NA	NA	9217	NM_023709	73647	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	0.010000	0.572139	
mm_156323.1	chrX	137570682	137570882	+	1	NA	NA	NA	28	NM_030688	60367	Mm.328321	NM_030688	ENSMUSG00000059203	Il1rapl2	-	interleukin 1 receptor accessory protein-like 2	protein-coding	0.020000	0.562189	
mm_59468.1	chr7	27266658	27266858	+	1	NA	NA	NA	7997	NM_010950	18223	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0.030000	0.626866	
mm_131672.1	chr16	20672813	20673013	+	1	NA	NA	NA	186	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.130000	0.771144	
mm_77078.1	chr8	110489716	110489916	-	1	NA	NA	NA	12540	NR_105058	100861869	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.035000	0.497512	
mm_56743.1	chr6	115838113	115838313	-	1	NA	NA	NA	199	NM_001110506	212516	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	0.040000	0.517413	
mm_105795.1	chr11	109995688	109995888	-	1	NA	NA	NA	28	NM_013851	27404	Mm.341004	NM_013851	ENSMUSG00000020620	Abca8b	Abca8	ATP-binding cassette, sub-family A (ABC1), member 8b	protein-coding	0.055000	0.582090	
mm_168104.1	chr10	13894183	13894383	+	1	NA	NA	NA	-25326	NM_001347362	66253	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	0.045000	0.631841	
mm_144495.1	chr18	24205870	24206070	+	1	NA	NA	NA	-24	NM_001160404	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.185000	0.860697	
mm_37143.1	chr4	116993529	116993729	-	1	NA	NA	NA	784	NM_009478	22275	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	0.020000	0.502488	
mm_27945.1	chr3	79737783	79737983	-	1	NA	NA	NA	-89	NM_212452	381489	Mm.331086	NM_212452	ENSMUSG00000034009	Rxfp1	Gm1018|Lgr7	relaxin/insulin-like family peptide receptor 1	protein-coding	0.015000	0.467662	
mm_54543.1	chr6	36809856	36810056	-	1	NA	NA	NA	1405	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.030000	0.567164	
mm_69539.1	chr7	135695463	135695663	-	1	NA	NA	NA	20816	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.000000	0.417910	
mm_96474.1	chr11	67652548	67652748	+	1	NA	NA	NA	-42678	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.005000	0.557214	
mm_56379.1	chr6	94283489	94283689	-	1	NA	NA	NA	328	NM_001286786	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.140000	0.696517	
mm_48150.1	chr5	137150999	137151199	-	1	NA	NA	NA	-34892	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.487562	
mm_113349.1	chr13	31806807	31807007	+	1	NA	NA	NA	261	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.075000	0.512438	
mm_136639.1	chr17	5799506	5799706	+	1	NA	NA	NA	116	NR_045080	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.045000	0.557214	
mm_164032.1	chr14	77539669	77539869	+	1	NA	NA	NA	-32901	NR_033141	629678	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	0.100000	0.696517	
mm_55700.1	chr6	72899825	72900025	-	1	NA	NA	NA	54	NM_019715	74287	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0.170000	0.830846	
mm_61163.1	chr7	59228704	59228904	+	1	NA	NA	NA	52	NM_011668	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|mKIAA4216	ubiquitin protein ligase E3A	protein-coding	0.105000	0.661692	
mm_32789.1	chr4	116807620	116807820	+	1	NA	NA	NA	-14	NM_133250	70603	Mm.180333	NM_133250	ENSMUSG00000028687	Mutyh	5730495A01Rik|Mutyha|Mutyhalpha|Mutyhb|Mutyhbeta|Mutyhc|Myh	mutY DNA glycosylase	protein-coding	0.100000	0.611940	
mm_96680.1	chr11	69443546	69443746	+	1	NA	NA	NA	-29971	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.015000	0.512438	
mm_6437.1	chr1	73997936	73998136	-	1	NA	NA	NA	126411	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.015000	0.422886	
mm_131017.1	chr15	103563287	103563487	-	1	NA	NA	NA	1694	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.005000	0.522388	
mm_164545.1	chr17	9669627	9669827	-	1	NA	NA	NA	-23	NM_001163836	67543	Mm.26987	NM_026226	ENSMUSG00000046173	Pabpc6	4932702K14Rik|AI428050|Pabpc3	poly(A) binding protein, cytoplasmic 6	protein-coding	0.045000	0.611940	
mm_124570.1	chr14	124192494	124192694	-	1	NA	NA	NA	-48	NM_010201	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.045000	0.671642	
mm_18511.1	chr2	62617255	62617455	-	1	NA	NA	NA	28900	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.020000	0.487562	
mm_139656.1	chr17	57402689	57402889	+	1	NA	NA	NA	44103	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.467662	
mm_45947.1	chr5	90337591	90337791	-	1	NA	NA	NA	28494	NM_030886	81702	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0.000000	0.328358	
mm_43155.1	chr5	125555338	125555538	+	1	NA	NA	NA	23020	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0.000000	0.442786	-62(TGGCTTAAAAAG,-,0.00),-60(GCTTAAAAAGAG,+,0.00)
mm_73841.1	chr8	117498158	117498358	+	1	NA	NA	NA	-17	NM_172285	234779	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.100000	0.706468	
mm_53526.1	chr6	136532832	136533032	+	1	NA	NA	NA	14081	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.000000	0.487562	
mm_3610.1	chr1	151755358	151755558	+	1	NA	NA	NA	84	NM_001311166	66967	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0.130000	0.741294	
mm_134187.1	chr16	10966376	10966576	-	1	NA	NA	NA	26645	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.035000	0.557214	
mm_20984.1	chr2	151980059	151980259	-	1	NA	NA	NA	60	NM_146127	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.100000	0.661692	
mm_93755.1	chr10	120174217	120174417	-	1	NA	NA	NA	27220	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.040000	0.522388	
mm_118042.1	chr13	101694463	101694663	-	1	NA	NA	NA	-1933	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.105000	0.736318	
mm_121264.1	chr14	103074224	103074424	+	1	NA	NA	NA	4108	NM_001033242	211286	Mm.295289	NM_001033242	ENSMUSG00000022125	Cln5	A730075N08Rik	ceroid-lipofuscinosis, neuronal 5	protein-coding	0.005000	0.402985	
mm_58519.1	chr7	4139400	4139600	+	1	NA	NA	NA	2444	NM_172736	232798	Mm.22831	NM_172736	ENSMUSG00000035545	Leng8	AW049671	leukocyte receptor cluster (LRC) member 8	protein-coding	0.015000	0.572139	
mm_72463.1	chr8	83290250	83290450	+	1	NA	NA	NA	2	NM_009463	22227	Mm.4177	NM_009463	ENSMUSG00000031710	Ucp1	AI385626|Slc25a7|Ucp	uncoupling protein 1 (mitochondrial, proton carrier)	protein-coding	0.045000	0.636816	
mm_22157.1	chr2	172869358	172869558	-	1	NA	NA	NA	70863	NM_007557	12162	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	0.010000	0.537313	
mm_24676.1	chr3	94837449	94837649	+	1	NA	NA	NA	-18	NM_001165948	229584	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	0.065000	0.686567	
mm_127282.1	chr15	99972716	99972916	+	1	NA	NA	NA	36	NM_001284523	207214	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	0.085000	0.711443	
mm_141491.1	chr17	31296535	31296735	-	1	NA	NA	NA	411	NM_001242427	224674	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.075000	0.681592	
mm_88276.1	chr10	75037212	75037412	+	1	NA	NA	NA	223	NM_029781	76877	Mm.133593	NM_029781	ENSMUSG00000020175	Rab36	6330593L16Rik|AW047545	RAB36, member RAS oncogene family	protein-coding	0.075000	0.666667	
mm_67980.1	chr7	100658323	100658523	-	1	NA	NA	NA	33	NM_001163185	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.055000	0.626866	
mm_68201.1	chr7	104380581	104380781	-	1	NA	NA	NA	-22035	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.000000	0.402985	
mm_141239.1	chr17	27436987	27437187	-	1	NA	NA	NA	66446	NM_001013385	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.010000	0.537313	
mm_5200.1	chr1	13374052	13374252	-	1	NA	NA	NA	-69	NM_008678	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.100000	0.706468	
mm_82196.1	chr9	124021871	124022071	+	1	NA	NA	NA	0	NM_009914	12771	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.005000	0.388060	71(GCCTTTTTAAAA,-,0.00)
mm_148467.1	chr19	4096813	4097013	+	1	NA	NA	NA	-438	NM_026373	52004	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0.090000	0.636816	
mm_151742.1	chr19	5001677	5001877	-	1	NA	NA	NA	-11806	NM_153553	225872	Mm.287867	NM_153553	ENSMUSG00000045903	Npas4	LE-PAS|Nxf	neuronal PAS domain protein 4	protein-coding	0.065000	0.651741	-35(GCCTTTTTAAGG,-,0.00),-33(CTTTTTAAGGCA,+,0.00)
mm_73509.1	chr8	107368101	107368301	+	1	NA	NA	NA	35004	NM_008706	18104	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	0.010000	0.442786	
mm_46930.1	chr5	114730266	114730466	-	1	NA	NA	NA	10851	NR_105995	102465622		NR_105995	ENSMUSG00000098656	Mir7028	Gm27674|mmu-mir-7028	microRNA 7028	ncRNA	0.030000	0.592040	
mm_165174.1	chr2	27037620	27037820	+	1	NA	NA	NA	-9722	NM_001177627	227659	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.005000	0.562189	
mm_53595.1	chr6	138140252	138140452	+	1	NA	NA	NA	-185	NM_019946	56615	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.025000	0.457711	
mm_148156.1	chr18	77565228	77565428	-	1	NA	NA	NA	-192	NM_001164504	225743	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0.135000	0.756219	
mm_165960.1	chr4	88722425	88722625	-	1	NA	NA	NA	-17	NM_172871	242521	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|ENSMUSG00000070923|mKIAA1354	kelch-like 9	protein-coding	0.095000	0.721393	
mm_62973.1	chr7	120098468	120098668	+	1	NA	NA	NA	-3858	NM_145586	233806	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	0.035000	0.427861	
mm_1277.1	chr1	63445913	63446113	+	1	NA	NA	NA	122	NM_011780	23792	Mm.124892	NM_011780	ENSMUSG00000025964	Adam23	AW046396|MDC3	a disintegrin and metallopeptidase domain 23	protein-coding	0.110000	0.756219	
mm_113740.1	chr13	44705810	44706010	+	1	NA	NA	NA	-24864	NM_021878	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.030000	0.532338	89(GTTTTTAGAGTA,+,0.00)
mm_42685.1	chr5	119832587	119832787	+	1	NA	NA	NA	-1976	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.055000	0.512438	
mm_8535.1	chr1	155054761	155054961	-	1	NA	NA	NA	44775	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.015000	0.502488	
mm_130719.1	chr15	101054235	101054435	-	1	NA	NA	NA	64	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.070000	0.631841	
mm_96796.1	chr11	69980736	69980936	+	1	NA	NA	NA	-332	NM_026017	67181	Mm.41678	NM_026017	ENSMUSG00000018559	Ctdnep1	2610507E10Rik|Dullard	CTD nuclear envelope phosphatase 1	protein-coding	0.060000	0.631841	
mm_129371.1	chr15	78119502	78119702	-	1	NA	NA	NA	-322	NM_007583	12300	Mm.277338	NM_007583	ENSMUSG00000019146	Cacng2	AW060990|B230105C07Rik|B930041E13Rik|stargazer|stargazin|stg|wag|waggler	calcium channel, voltage-dependent, gamma subunit 2	protein-coding	0.130000	0.731343	
mm_123561.1	chr14	66868528	66868728	-	1	NA	NA	NA	-28	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.050000	0.557214	
mm_60035.1	chr7	31032788	31032988	+	1	NA	NA	NA	7429	NR_106017	102465635		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.010000	0.587065	
mm_60855.1	chr7	45833529	45833729	+	1	NA	NA	NA	-2840	NM_153419	101612	Mm.274847	NM_153419	ENSMUSG00000053801	Grwd1	A301|AI504353|Grwd|Wdr28	glutamate-rich WD repeat containing 1	protein-coding	0.160000	0.796020	
mm_71550.1	chr8	48109876	48110076	+	1	NA	NA	NA	18	NM_178788	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	0.060000	0.651741	
mm_46905.1	chr5	114273736	114273936	-	1	NA	NA	NA	-75	NM_148935	116810	Mm.17709	NM_148935	ENSMUSG00000042002	Foxn4	-	forkhead box N4	protein-coding	0.060000	0.587065	
mm_128124.1	chr15	31325226	31325426	-	1	NA	NA	NA	42433	NM_001164441	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.005000	0.557214	
mm_155432.1	chrX	73493151	73493351	+	1	NA	NA	NA	9650	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.015000	0.537313	
mm_74225.1	chr8	124066693	124066893	+	1	NA	NA	NA	43320	NM_001029876	382038	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	0.010000	0.522388	
mm_122493.1	chr14	46634330	46634530	-	1	NA	NA	NA	2993	NR_046460	74458	Mm.390708	NR_046460		4933425B07Rik	-	RIKEN cDNA 4933425B07 gene	ncRNA	0.030000	0.537313	
mm_7627.1	chr1	127577734	127577934	-	1	NA	NA	NA	100187	NM_028135	72160	Mm.281287	NM_028135	ENSMUSG00000026347	Tmem163	2610024A01Rik|SV31	transmembrane protein 163	protein-coding	0.010000	0.368159	40(CTGTATAAAAGA,-,0.00)
mm_64352.1	chr7	142385400	142385600	+	1	NA	NA	NA	2370	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.030000	0.532338	
mm_38950.1	chr4	150568617	150568817	-	1	NA	NA	NA	83457	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.005000	0.527363	-90(GGGCCTATAAAG,-,0.00),-88(GCCTATAAAGAA,+,0.00),-88(GCCTATAAAGAA,-,0.00)
mm_48345.1	chr5	139325289	139325489	-	1	NA	NA	NA	75	NM_172723	231821	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.205000	0.825871	
mm_42432.1	chr5	115404067	115404267	+	1	NA	NA	NA	-25518	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.020000	0.477612	
mm_170676.1	chr2	121806965	121807165	-	1	NA	NA	NA	-8	NM_172673	228564	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|5830442F04|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	0.050000	0.636816	
mm_169878.1	chr16	37815682	37815882	+	1	NA	NA	NA	38727	NM_008047	14314	Mm.182434	NM_008047	ENSMUSG00000022816	Fstl1	AI316791|AW107808|Fstl|TSC-36	follistatin-like 1	protein-coding	0.015000	0.527363	
mm_106919.1	chr12	8286956	8287156	+	1	NA	NA	NA	14898	NM_001312876	238057	Mm.271308	NM_013527	ENSMUSG00000037660	Gdf7	BMP12	growth differentiation factor 7	protein-coding	0.010000	0.472637	
mm_81622.1	chr9	110834529	110834729	+	1	NA	NA	NA	41	NM_153172	260408	Mm.79114	NM_153172	ENSMUSG00000047257	Prss45	Tespl|Tessp5	protease, serine 45	protein-coding	0.085000	0.606965	
mm_121193.1	chr14	103050981	103051181	+	1	NA	NA	NA	4069	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.000000	0.353234	
mm_71914.1	chr8	70131260	70131460	+	1	NA	NA	NA	33	NM_001025587	75692	Mm.161167	NM_001025586	ENSMUSG00000071078	Nr2c2ap	2310073E15Rik	nuclear receptor 2C2-associated protein	protein-coding	0.090000	0.611940	-94(GGCCCTTTAAGA,-,0.00),-93(GCCCTTTAAGAG,-,0.00),-92(CCCTTTAAGAGG,-,0.00),-91(CCTTTAAGAGGC,+,0.00)
mm_102692.1	chr11	65745736	65745936	-	1	NA	NA	NA	-11004	NR_030417	791070		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	0.015000	0.437811	
mm_27907.1	chr3	79516237	79516437	-	1	NA	NA	NA	51342	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.015000	0.512438	
mm_46063.1	chr5	92278045	92278245	-	1	NA	NA	NA	36	NM_001163687	67111	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	0.055000	0.691542	
mm_60563.1	chr7	44481269	44481469	+	1	NA	NA	NA	-3148	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.462687	
mm_68183.1	chr7	104129706	104129906	-	1	NA	NA	NA	17	NM_027634	70980	Mm.158518	NM_027634	ENSMUSG00000055643	4931431F19Rik	-	RIKEN cDNA 4931431F19 gene	protein-coding	0.015000	0.552239	
mm_64691.1	chr7	4522338	4522538	-	1	NA	NA	NA	5	NM_009406	21954	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0.020000	0.562189	
mm_135219.1	chr16	36665977	36666177	-	1	NA	NA	NA	0	NM_019388	12524	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.020000	0.442786	
mm_31243.1	chr4	44823987	44824187	+	1	NA	NA	NA	67528	NM_138590	319885	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	0.000000	0.378109	
mm_152902.1	chr19	25347124	25347324	-	1	NA	NA	NA	110022	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.030000	0.507463	-20(ACCTTTAAAAAA,-,0.00)
mm_163080.1	chr11	68872003	68872203	+	1	NA	NA	NA	-16450	NM_177060	320040	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	0.030000	0.517413	
mm_3088.1	chr1	134406246	134406446	+	1	NA	NA	NA	356	NM_028057	72017	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	0.055000	0.631841	
mm_81665.1	chr9	111022296	111022496	+	1	NA	NA	NA	3104	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.030000	0.542289	6(CCCTATAGGGAC,+,0.00)
mm_162333.1	chr1	43310820	43311020	-	1	NA	NA	NA	-114159	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.020000	0.457711	
mm_43811.1	chr5	142904430	142904630	+	1	NA	NA	NA	2224	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.045000	0.572139	
mm_38531.1	chr4	141559323	141559523	-	1	NA	NA	NA	13261	NR_030695	320456	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.040000	0.552239	
mm_146479.1	chr18	89197356	89197556	+	1	NA	NA	NA	29	NM_001039149	225825	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.010000	0.472637	
mm_118852.1	chr14	25694102	25694302	+	1	NA	NA	NA	32	NM_134084	105675	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.150000	0.706468	
mm_30621.1	chr4	8690460	8690660	+	1	NA	NA	NA	154	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.170000	0.736318	
mm_169468.1	chr14	66757143	66757343	-	1	NA	NA	NA	111357	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.015000	0.487562	
mm_66666.1	chr7	45717835	45718035	-	1	NA	NA	NA	67	NM_203280	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.065000	0.582090	
mm_151882.1	chr19	5798440	5798640	-	1	NA	NA	NA	-2559	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.005000	0.328358	
mm_124480.1	chr14	121597408	121597608	-	1	NA	NA	NA	-92254	NM_053079	56643	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	0.000000	0.283582	
mm_145456.1	chr18	60231062	60231262	+	1	NA	NA	NA	19085	NM_001033767	240327	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.005000	0.437811	
mm_5778.1	chr1	51512932	51513132	-	1	NA	NA	NA	-34633	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.005000	0.472637	
mm_153999.1	chr19	51142587	51142787	-	1	NA	NA	NA	-464041	NM_001290356	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.060000	0.507463	69(AACTTTAAATGG,-,0.00)
mm_54497.1	chr6	35510207	35510407	-	1	NA	NA	NA	29581	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.373134	19(CTATTTTAAAGG,-,0.00)
mm_16193.1	chr2	172977815	172978015	+	1	NA	NA	NA	-1927	NM_012046	26972	Mm.23495	NM_012046	ENSMUSG00000005883	Spo11	AI449549|Spo11a|Spo11b	SPO11 meiotic protein covalently bound to DSB	protein-coding	0.015000	0.502488	-91(GGACATAAAAGG,-,0.00)
mm_29930.1	chr3	131491304	131491504	-	1	NA	NA	NA	-73364	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.005000	0.393035	
mm_8178.1	chr1	138078496	138078696	-	1	NA	NA	NA	96530	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.005000	0.348259	
mm_127453.1	chr15	101270769	101270969	+	1	NA	NA	NA	4023	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.060000	0.631841	
mm_149797.1	chr19	23619226	23619426	+	1	NA	NA	NA	33486	NM_026188	67483	Mm.443287	NM_026188	ENSMUSG00000033053	1700028P14Rik	AV209940	RIKEN cDNA 1700028P14 gene	protein-coding	0.015000	0.452736	
mm_166234.1	chr5	67473825	67474025	+	1	NA	NA	NA	10027	NR_015582	320479	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	0.030000	0.477612	
mm_120512.1	chr14	66635099	66635299	+	1	NA	NA	NA	-52	NM_001271759	11549	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	0.055000	0.482587	
mm_155764.1	chrX	96168299	96168499	+	1	NA	NA	NA	-71527	NR_030718	100038363	Mm.30815	NR_030718	ENSMUSG00000078122	F630028O10Rik	ENSMUSG00000065522|Gm14924|OTTMUSG00000018496|mir-223	RIKEN cDNA F630028O10 gene	ncRNA	0.000000	0.383085	
mm_131952.1	chr16	24433558	24433758	+	1	NA	NA	NA	-14433	NM_001145952	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.020000	0.532338	-26(GTCTTTAAAGAG,+,0.00),-26(GTCTTTAAAGAG,-,0.00),-24(CTTTAAAGAGAC,+,0.00)
mm_55228.1	chr6	52234831	52235031	-	1	NA	NA	NA	8	NM_008263	15395	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0.075000	0.557214	
mm_144945.1	chr18	37806321	37806521	+	1	NA	NA	NA	11	NM_033581	93706	Mm.247203	NM_033581	ENSMUSG00000102918	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding	0.090000	0.661692	
mm_138113.1	chr17	34135607	34135807	+	1	NA	NA	NA	-9709	NM_010388	15000	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0.050000	0.616915	
mm_153968.1	chr19	47857792	47857992	-	1	NA	NA	NA	2919	NM_010362	14873	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0.035000	0.507463	
mm_57091.1	chr6	122587417	122587617	-	1	NA	NA	NA	14927	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.000000	0.422886	
mm_89138.1	chr10	85598641	85598841	+	1	NA	NA	NA	330	NM_001017525	74007	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.095000	0.661692	
mm_151604.1	chr19	3575632	3575832	-	1	NA	NA	NA	17	NM_001164159	52036	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.080000	0.621891	
mm_94922.1	chr11	29507598	29507798	+	1	NA	NA	NA	7335	NM_026465	67939	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0.005000	0.333333	
mm_153214.1	chr19	34747137	34747337	-	1	NA	NA	NA	-126	NM_172838	240638	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0.105000	0.741294	
mm_116022.1	chr13	24831514	24831714	-	1	NA	NA	NA	-45	NM_019551	56196	Mm.427162	NM_019551	ENSMUSG00000035958	Tdp2	D13Ertd656e|Ttrap	tyrosyl-DNA phosphodiesterase 2	protein-coding	0.125000	0.706468	
mm_145702.1	chr18	62657194	62657394	+	1	NA	NA	NA	-61030	NM_001001803	408198	Mm.478742	NM_001001803	ENSMUSG00000060201	Spink7	EG408198|Ecg2	serine peptidase inhibitor, Kazal type 7 (putative)	protein-coding	0.005000	0.432836	
mm_137756.1	chr17	29467716	29467916	+	1	NA	NA	NA	-23229	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.045000	0.621891	
mm_93120.1	chr10	91170493	91170693	-	1	NA	NA	NA	-43	NM_001283048	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.035000	0.393035	
mm_152438.1	chr19	10738802	10739002	-	1	NA	NA	NA	72	NM_007650	12507	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	0.005000	0.592040	
mm_161037.1	chr12	29999782	29999982	+	1	NA	NA	NA	61846	NM_181395	69675	Mm.251774	NM_181395	ENSMUSG00000020674	Pxdn	2310075M15Rik|C85409|E330004E07|VPO1|mKIAA0230	peroxidasin	protein-coding	0.035000	0.487562	
mm_34733.1	chr4	152186093	152186293	+	1	NA	NA	NA	59	NM_001146057	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.035000	0.601990	69(CCTTTTCGAGCC,+,0.00)
mm_121737.1	chr14	18331702	18331902	-	1	NA	NA	NA	42	NM_009455	22194	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	0.110000	0.726368	
mm_120446.1	chr14	65968451	65968651	+	1	NA	NA	NA	68	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.055000	0.631841	60(CGCTATAAATAG,-,0.00)
mm_166273.1	chr5	90490604	90490804	+	1	NA	NA	NA	-10	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.020000	0.457711	0(GGATATAAAAGG,-,0.00)
mm_65189.1	chr7	19696473	19696673	-	1	NA	NA	NA	1825	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.065000	0.631841	
mm_157005.1	chrX	7583955	7584155	-	1	NA	NA	NA	3572	NM_001199348	20371	Mm.182291	NM_054039	ENSMUSG00000039521	Foxp3	JM2|scurfin|sf	forkhead box P3	protein-coding	0.045000	0.552239	
mm_108982.1	chr12	102743900	102744100	+	1	NA	NA	NA	240	NM_177140	320351	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	0.100000	0.671642	
mm_31468.1	chr4	49559881	49560081	+	1	NA	NA	NA	-10435	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.020000	0.606965	
mm_16039.1	chr2	167690627	167690827	+	1	NA	NA	NA	-32	NR_110334	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.020000	0.577114	
mm_26474.1	chr3	144570464	144570664	+	1	NA	NA	NA	137	NM_053102	93684	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.055000	0.487562	-36(ATCTCTAAAAGA,-,0.00)
mm_144474.1	chr18	23883483	23883683	+	1	NA	NA	NA	-71105	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.035000	0.502488	
mm_40032.1	chr5	33658042	33658242	+	1	NA	NA	NA	14	NM_001040435	21335	Mm.379024	NM_011524	ENSMUSG00000037313	Tacc3	Aint|C86661|Eric1	transforming, acidic coiled-coil containing protein 3	protein-coding	0.060000	0.621891	
mm_32560.1	chr4	109484780	109484980	+	1	NA	NA	NA	-8375	NM_013876	29864	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0.010000	0.522388	
mm_90646.1	chr10	128744708	128744908	+	1	NA	NA	NA	-752	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.010000	0.527363	
mm_67582.1	chr7	82971291	82971491	-	1	NA	NA	NA	0	NR_045855	71285	Mm.76818	NR_045855	ENSMUSG00000109106	4933430H16Rik	-	RIKEN cDNA 4933430H16 gene	ncRNA	0.025000	0.537313	
mm_20942.1	chr2	151432298	151432498	-	1	NA	NA	NA	51	NR_131976	100125594	Mm.381283	NR_131976	ENSMUSG00000087495	LOC100125594	-	uncharacterized LOC100125594	ncRNA	0.035000	0.502488	
mm_143773.1	chr17	81697588	81697788	-	1	NA	NA	NA	40699	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.000000	0.417910	
mm_64125.1	chr7	141132367	141132567	+	1	NA	NA	NA	1181	NM_013782	27388	Mm.293591	NM_013782	ENSMUSG00000025495	Ptdss2	AI481134|AI988017|PSS2	phosphatidylserine synthase 2	protein-coding	0.005000	0.462687	
mm_79896.1	chr9	65345972	65346172	+	1	NA	NA	NA	4	NM_016688	50996	Mm.29193	NM_016688	ENSMUSG00000041837	Pdcd7	C80112|ES18	programmed cell death 7	protein-coding	0.055000	0.552239	
mm_140477.1	chr17	94864831	94865031	+	1	NA	NA	NA	13	NM_001024731	100044193		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	0.035000	0.562189	
mm_148789.1	chr19	6164340	6164540	+	1	NA	NA	NA	-18	NM_028967	74481	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	4933430F08Rik	basic leucine zipper transcription factor, ATF-like 2	protein-coding	0.010000	0.567164	
mm_24815.1	chr3	95623796	95623996	+	1	NA	NA	NA	-1084	NM_019561	56205	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.000000	0.552239	-35(CACTATAAAAGG,-,0.00)
mm_135329.1	chr16	38800232	38800432	-	1	NA	NA	NA	-129	NM_178924	22268	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0.025000	0.582090	
mm_113372.1	chr13	33003364	33003564	+	1	NA	NA	NA	-1077	NM_009256	20723	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0.000000	0.507463	
mm_101925.1	chr11	50202374	50202574	-	1	NA	NA	NA	8346	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.010000	0.527363	
mm_152287.1	chr19	8942289	8942489	-	1	NA	NA	NA	469	NM_011842	23942	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	0.105000	0.706468	
mm_127798.1	chr15	3979397	3979597	-	1	NA	NA	NA	76	NM_134099	106052	Mm.234191	NM_134099	ENSMUSG00000022184	Fbxo4	1700096C12Rik|AI851261|AW494535|Fbx4	F-box protein 4	protein-coding	0.120000	0.741294	
mm_33948.1	chr4	137320847	137321047	+	1	NA	NA	NA	36812	NM_009861	12540	Mm.1022	NM_009861	ENSMUSG00000006699	Cdc42	AI747189|AU018915	cell division cycle 42	protein-coding	0.005000	0.338308	
mm_90658.1	chr10	128804922	128805122	+	1	NA	NA	NA	-652	NM_178066	73827	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	0.080000	0.616915	
mm_74016.1	chr8	121542022	121542222	+	1	NA	NA	NA	-168	NM_029597	76405	Mm.165697	NM_029597	ENSMUSG00000031809	1700018B08Rik	1700084O22Rik	RIKEN cDNA 1700018B08 gene	protein-coding	0.060000	0.587065	
mm_9532.1	chr1	173846367	173846567	-	1	NA	NA	NA	33720	NM_001170853	100040462	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	0.015000	0.417910	
mm_171409.1	chr4	129312327	129312527	+	1	NA	NA	NA	22943	NM_009030	19646	Mm.12145	NM_009030	ENSMUSG00000057236	Rbbp4	RBAP48|mRbAp48	retinoblastoma binding protein 4	protein-coding	0.020000	0.517413	-29(GCCTATATAAGC,-,0.00)
mm_173125.1	chrX	170001374	170001574	-	1	NA	NA	NA	-22557	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.025000	0.676617	
mm_127214.1	chr15	99249499	99249699	+	1	NA	NA	NA	-2189	NR_045627	73600	Mm.475134	NR_045627	ENSMUSG00000100599	1700120C14Rik	-	RIKEN cDNA 1700120C14 gene	ncRNA	0.010000	0.532338	
mm_39010.1	chr4	152038340	152038540	-	1	NA	NA	NA	50	NM_031867	110326	Mm.29232	NM_031867	ENSMUSG00000028950	Tas1r1	Gpr70|T1r1|TR1	taste receptor, type 1, member 1	protein-coding	0.020000	0.621891	56(GCTTTTCTGGGC,+,0.00)
mm_156114.1	chrX	114474507	114474707	+	1	NA	NA	NA	274	NM_001290477	237010	Mm.132583	NM_172781	ENSMUSG00000025597	Klhl4	B130014A11|C130018J01Rik	kelch-like 4	protein-coding	0.035000	0.527363	
mm_39306.1	chr5	7960355	7960555	+	1	NA	NA	NA	-17	NM_054098	117167	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0.070000	0.641791	-34(TGGCTTAAAAGC,-,0.00),-32(GCTTAAAAGCGG,+,0.00)
mm_31652.1	chr4	59804908	59805108	+	1	NA	NA	NA	-642	NM_172468	209131	Mm.259705	NM_172468	ENSMUSG00000028385	Snx30	4732481H14Rik|C030041J06Rik	sorting nexin family member 30	protein-coding	0.005000	0.383085	-6(GTTTTTAGAGAA,+,0.00)
mm_14860.1	chr2	148781997	148782197	+	1	NA	NA	NA	88	NM_030135	78609	Mm.160102	NM_030135	ENSMUSG00000027444	8030411F24Rik	Cst14	RIKEN cDNA 8030411F24 gene	protein-coding	0.005000	0.487562	-74(GAGCCTAAAAGG,-,0.00),-72(GCCTAAAAGGGC,+,0.00)
mm_48833.1	chr5	149184845	149185045	-	1	NA	NA	NA	385	NM_001115149	231915	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	0.065000	0.606965	
mm_46366.1	chr5	103425625	103425825	-	1	NA	NA	NA	533	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.090000	0.651741	
mm_107705.1	chr12	55490329	55490529	+	1	NA	NA	NA	2218	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.035000	0.557214	
mm_116613.1	chr13	48870954	48871154	-	1	NA	NA	NA	-169	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.190000	0.855721	
mm_95622.1	chr11	53582123	53582323	+	1	NA	NA	NA	14854	NM_001290806	16568	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	0.000000	0.333333	
mm_108246.1	chr12	78226335	78226535	+	1	NA	NA	NA	-220	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.095000	0.701493	
mm_133027.1	chr16	57175667	57175867	+	1	NA	NA	NA	-8435	NM_023175	52633	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.005000	0.597015	
mm_171935.1	chr5	64544871	64545071	-	1	NA	NA	NA	65728	NR_045078	100042198	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0.040000	0.626866	
mm_118375.1	chr13	117014706	117014906	-	1	NA	NA	NA	10710	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.020000	0.497512	
mm_58057.1	chr6	136857538	136857738	-	1	NA	NA	NA	-38	NM_026639	109978	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	0.020000	0.537313	
mm_63458.1	chr7	127543110	127543310	+	1	NA	NA	NA	15313	NR_034045	100217442	Mm.451113	NR_034045	ENSMUSG00000065259	Snora30	MBI-26	small nucleolar RNA, H/ACA box 30	snoRNA	0.010000	0.373134	
mm_35842.1	chr4	48049002	48049202	-	1	NA	NA	NA	-2144	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.055000	0.626866	
mm_119333.1	chr14	39655562	39655762	+	1	NA	NA	NA	-1	NR_045936	73591	Mm.65499	NR_045936	ENSMUSG00000101261	1700109I08Rik	-	RIKEN cDNA 1700109I08 gene	ncRNA	0.005000	0.522388	
mm_170947.1	chr2	52742357	52742557	+	1	NA	NA	NA	-308	NM_019667	56324	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0.085000	0.666667	
mm_37050.1	chr4	116017929	116018129	-	1	NA	NA	NA	-127	NM_010173	14073	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	0.040000	0.562189	
mm_59978.1	chr7	30465207	30465407	+	1	NA	NA	NA	284	NR_004443	445267	Mm.398140	NR_004443	ENSMUSG00000087009	Nphs1os	Nphs1as	nephrosis 1 homolog, nephrin, opposite strand	ncRNA	0.015000	0.601990	
mm_64201.1	chr7	141469092	141469292	+	1	NA	NA	NA	403	NM_001111050	12476	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0.015000	0.547264	
mm_96826.1	chr11	69995786	69995986	+	1	NA	NA	NA	120	NM_030064	78246	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.095000	0.706468	
mm_7518.1	chr1	124045405	124045605	-	1	NA	NA	NA	54	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.090000	0.671642	
mm_22257.1	chr2	177398225	177398425	-	1	NA	NA	NA	-66417	NM_001177568	628308	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420|OTTMUSG00000016588	zinc finger protein 970	protein-coding	0.010000	0.497512	
mm_152.1	chr1	11414116	11414316	+	1	NA	NA	NA	111	NM_001160371	320492	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding	0.130000	0.746269	
mm_47396.1	chr5	123035905	123036105	-	1	NA	NA	NA	10815	NM_029112	74890	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0.005000	0.373134	
mm_56975.1	chr6	120286582	120286782	-	1	NA	NA	NA	7877	NM_198884	330406	Mm.321840	NM_198884	ENSMUSG00000041372	B4galnt3	AB114826|B4GalNAcT3|C330047A21	beta-1,4-N-acetyl-galactosaminyl transferase 3	protein-coding	0.005000	0.333333	
mm_96259.1	chr11	62603352	62603552	+	1	NA	NA	NA	-8	NR_028550	100217455		NR_028550	ENSMUSG00000065734	Snord49a	MBII-243	small nucleolar RNA, C/D box 49A	snoRNA	0.025000	0.502488	
mm_5342.1	chr1	24587341	24587541	-	1	NA	NA	NA	-4	NM_007733	12823	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.070000	0.656716	
mm_169103.1	chr1	34476116	34476316	-	1	NA	NA	NA	16470	NM_011206	19253	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.000000	0.507463	-31(GCTTTAATACCC,+,0.00)
mm_85689.1	chr9	108061898	108062098	-	1	NA	NA	NA	8839	NM_177275	320844	Mm.449806	NM_177275	ENSMUSG00000032593	Amigo3	E430002N15Rik|ali3|mKIAA1851	adhesion molecule with Ig like domain 3	protein-coding	0.010000	0.562189	
mm_15957.1	chr2	165992621	165992821	+	1	NA	NA	NA	84	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.145000	0.741294	
mm_154472.1	chrM	3750	3950	-	1	NA	NA	NA	NA	NA									0.025000	0.398010	
mm_137151.1	chr17	23679646	23679846	+	1	NA	NA	NA	381	NM_018777	54419	Mm.86421	NM_018777	ENSMUSG00000023906	Cldn6	AL024037	claudin 6	protein-coding	0.070000	0.651741	
mm_156672.1	chrX	159255775	159255975	+	1	NA	NA	NA	93	NM_001346675	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	0.140000	0.751244	
mm_118998.1	chr14	28511263	28511463	+	1	NA	NA	NA	-42	NM_001256224	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.100000	0.716418	
mm_127879.1	chr15	8635173	8635373	-	1	NA	NA	NA	75534	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.005000	0.437811	
mm_134741.1	chr16	23029027	23029227	-	1	NA	NA	NA	-26	NM_001102410	385643	Mm.440414	NM_201375	ENSMUSG00000060459	Kng2	-	kininogen 2	protein-coding	0.000000	0.472637	
mm_138156.1	chr17	34238839	34239039	+	1	NA	NA	NA	34	NM_010389	15002	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	0.010000	0.482587	
mm_96689.1	chr11	69590564	69590764	+	1	NA	NA	NA	10305	NM_001127233	22059	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.035000	0.502488	
mm_73108.1	chr8	94666646	94666846	+	1	NA	NA	NA	146	NM_024191	107566	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0.155000	0.810945	
mm_67545.1	chr7	81493609	81493809	-	1	NA	NA	NA	216	NM_021492	11775	Mm.322894	NM_021492	ENSMUSG00000062444	Ap3b2	AI549966|AU042881|Naptb|[b]-NAP|beta-NAP|beta3B	adaptor-related protein complex 3, beta 2 subunit	protein-coding	0.085000	0.651741	-58(CCTTTAAGAACC,+,0.00)
mm_18164.1	chr2	45099481	45099681	-	1	NA	NA	NA	10696	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.015000	0.343284	
mm_20905.1	chr2	150306677	150306877	-	1	NA	NA	NA	49260	NM_001142410	100216455	Mm.484816	NM_001142410	ENSMUSG00000079008	Gm14124	EG640962|ENSMUSG00000074735|Gm10749|OTTMUSG00000015734	predicted gene 14124	protein-coding	0.005000	0.472637	
mm_171685.1	chr4	58224703	58224903	+	1	NA	NA	NA	-18207	NM_022814	64817	Mm.261024	NM_022814	ENSMUSG00000028369	Svep1	1110021D17Rik|4833413O10Rik|AA387071|D430029O09Rik|Polydom	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	protein-coding	0.035000	0.422886	
mm_63037.1	chr7	121075718	121075918	+	1	NA	NA	NA	-1288	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.010000	0.432836	
mm_160177.1	chr7	45556025	45556225	+	1	NA	NA	NA	1197	NM_025330	66065	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.025000	0.532338	
mm_97890.1	chr11	83298926	83299126	+	1	NA	NA	NA	-49	NM_134025	103737	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding	0.085000	0.611940	
mm_143809.1	chr17	83654575	83654775	-	1	NA	NA	NA	-22780	NM_153512	225030	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.020000	0.542289	
mm_133786.1	chr16	95257566	95257766	+	1	NA	NA	NA	108	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.025000	0.432836	-75(ACCTTTAAAAAA,-,0.00),-74(CCTTTAAAAAAC,+,0.00),6(TCTTTTATACAC,+,0.00)
mm_18991.1	chr2	76867100	76867300	-	1	NA	NA	NA	115347	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.015000	0.402985	
mm_47165.1	chr5	120743480	120743680	-	1	NA	NA	NA	6268	NM_145227	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.015000	0.462687	
mm_30846.1	chr4	24894775	24894975	+	1	NA	NA	NA	-3208	NM_026742	68493	Mm.204831	NM_026742	ENSMUSG00000028261	Ndufaf4	1110007M04Rik|3000003G13Rik|AW214064	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 4	protein-coding	0.010000	0.368159	
mm_77289.1	chr8	116921330	116921530	-	1	NA	NA	NA	6	NM_026844	66531	Mm.4011	NM_026844	ENSMUSG00000014633	Cmc2	1110046L09Rik|2310061C15Rik|DC13	COX assembly mitochondrial protein 2	protein-coding	0.075000	0.631841	
mm_144525.1	chr18	25044943	25045143	+	1	NA	NA	NA	120922	NM_001142697	66648	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.000000	0.303483	
mm_105763.1	chr11	109603724	109603924	-	1	NA	NA	NA	7565	NM_145940	52639	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0.025000	0.527363	
mm_93901.1	chr10	125488312	125488512	-	1	NA	NA	NA	-159877	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.010000	0.457711	
mm_29053.1	chr3	103737901	103738101	-	1	NA	NA	NA	0	NM_133859	99543	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	0.025000	0.621891	
mm_105772.1	chr11	109716642	109716842	-	1	NA	NA	NA	5514	NM_153782	208659	Mm.208662	NM_153782	ENSMUSG00000020614	Fam20a	AI606893	family with sequence similarity 20, member A	protein-coding	0.010000	0.417910	
mm_62747.1	chr7	111083234	111083434	+	1	NA	NA	NA	-304	NM_013507	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.115000	0.721393	
mm_152014.1	chr19	5989191	5989391	-	1	NA	NA	NA	-3148	NM_198650	381203	Mm.329638	NM_198650	ENSMUSG00000037451	Slc22a20	Gm963|OAT1-L|mOAT6	solute carrier family 22 (organic anion transporter), member 20	protein-coding	0.035000	0.597015	
mm_9621.1	chr1	176754292	176754492	-	1	NA	NA	NA	18031	NR_029775	723921		NR_029775	ENSMUSG00000065573	Mir350	Mirn350|mir-350|mmu-mir-350	microRNA 350	ncRNA	0.010000	0.407960	
mm_21398.1	chr2	157571210	157571410	-	1	NA	NA	NA	-4949	NM_016916	53619	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0.005000	0.517413	
mm_67539.1	chr7	81455292	81455492	-	1	NA	NA	NA	-634	NM_001252526	12877	Mm.273122	NM_007755	ENSMUSG00000025586	Cpeb1	AU024112|Cpeb|mCPEB	cytoplasmic polyadenylation element binding protein 1	protein-coding	0.070000	0.577114	
mm_108223.1	chr12	77189305	77189505	+	1	NA	NA	NA	-48699	NM_001252614	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.005000	0.487562	
mm_37613.1	chr4	126968039	126968239	-	1	NA	NA	NA	-216	NM_001114399	67785	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0.080000	0.671642	
mm_81973.1	chr9	121297424	121297624	+	1	NA	NA	NA	-20352	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.185000	0.845771	
mm_11428.1	chr2	31950233	31950433	+	1	NA	NA	NA	30	NM_145144	108897	Mm.24838	NM_145144	ENSMUSG00000001864	Aif1l	2810003C17Rik|AI043124|C87647|Iba2	allograft inflammatory factor 1-like	protein-coding	0.105000	0.681592	
mm_72577.1	chr8	84197310	84197510	+	1	NA	NA	NA	-11108	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.035000	0.562189	
mm_16806.1	chr2	10130481	10130681	-	1	NA	NA	NA	102	NM_010582	16425	Mm.182043	NM_010582	ENSMUSG00000037254	Itih2	AI747202|Intin2|Itih-2	inter-alpha trypsin inhibitor, heavy chain 2	protein-coding	0.030000	0.512438	-100(CTTTTTAAAACG,+,0.00)
mm_48818.1	chr5	149015874	149016074	-	1	NA	NA	NA	9012	NR_040429	100503307	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	OTTMUSG00000021225	predicted gene 15408	ncRNA	0.025000	0.422886	
mm_81290.1	chr9	108320616	108320816	+	1	NA	NA	NA	13919	NM_001313962	11848	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	0.000000	0.378109	-78(CTCTTTATAAAG,-,0.00),-76(CTTTATAAAGAC,+,0.00),14(ACCTATTTAAGG,-,0.00)
mm_72509.1	chr8	83900040	83900240	+	1	NA	NA	NA	42	NM_181039	330814	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0.130000	0.781095	
mm_52528.1	chr6	115676634	115676834	+	1	NA	NA	NA	-99	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.105000	0.686567	
mm_92227.1	chr10	68541775	68541975	-	1	NA	NA	NA	0	NM_028491	73287	Mm.141830	NM_028491	ENSMUSG00000019945	1700040L02Rik	-	RIKEN cDNA 1700040L02 gene	protein-coding	0.055000	0.592040	
mm_91627.1	chr10	41809798	41809998	-	1	NA	NA	NA	-30	NM_026643	103268	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	0.105000	0.592040	
mm_1608.1	chr1	74382274	74382474	+	1	NA	NA	NA	7171	NM_013612	18173	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.015000	0.562189	
mm_84011.1	chr9	57645338	57645538	-	1	NA	NA	NA	215	NM_007783	12988	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.125000	0.786070	
mm_134034.1	chr16	5013465	5013665	-	1	NA	NA	NA	-12	NM_133185	66049	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	0.110000	0.656716	
mm_128633.1	chr15	59081958	59082158	-	1	NA	NA	NA	-32	NM_144800	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.180000	0.756219	
mm_31896.1	chr4	83342156	83342356	+	1	NA	NA	NA	-18067	NM_027238	69863	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.020000	0.517413	
mm_86909.1	chr10	22731403	22731603	+	1	NA	NA	NA	-56	NM_011603	237336	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.100000	0.731343	
mm_41251.1	chr5	88793792	88793992	+	1	NA	NA	NA	28879	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.010000	0.487562	
mm_68293.1	chr7	105736412	105736612	-	1	NA	NA	NA	72	NM_025897	101867	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.095000	0.661692	
mm_135699.1	chr16	52452871	52453071	-	1	NA	NA	NA	110	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.095000	0.726368	
mm_93357.1	chr10	103028948	103029148	-	1	NA	NA	NA	-271	NM_172553	216285	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding	0.050000	0.621891	
mm_123.1	chr1	9835950	9836150	+	1	NA	NA	NA	-12231	NM_001037759	170755	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.005000	0.398010	
mm_44718.1	chr5	30957889	30958089	-	1	NA	NA	NA	2338	NM_001294302	50907	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0.025000	0.582090	
mm_5813.1	chr1	52504200	52504400	-	1	NA	NA	NA	-3852	NM_008667	17936	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	0.005000	0.547264	
mm_69637.1	chr7	138397645	138397845	-	1	NA	NA	NA	-15	NM_183289	70571	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	0.160000	0.820896	
mm_60474.1	chr7	44478097	44478297	+	1	NA	NA	NA	-6320	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.437811	
mm_117101.1	chr13	60174779	60174979	-	1	NA	NA	NA	2656	NM_008086	14451	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	0.010000	0.288557	
mm_40238.1	chr5	37486901	37487101	+	1	NA	NA	NA	148523	NM_145920	68525	Mm.25506	NM_145920	ENSMUSG00000050248	Evc2	1110017L09Rik|Lbn|limbin	Ellis van Creveld syndrome 2	protein-coding	0.000000	0.507463	
mm_115642.1	chr13	12274021	12274221	-	1	NA	NA	NA	-16008	NM_001081128	238505	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.015000	0.532338	
mm_68832.1	chr7	126200342	126200542	-	1	NA	NA	NA	-34	NM_028816	74204	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|mKIAA0370	exportin 6	protein-coding	0.115000	0.746269	
mm_101139.1	chr11	14147608	14147808	-	1	NA	NA	NA	31333	NR_131011	75280	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	0.025000	0.492537	
mm_126331.1	chr15	79892359	79892559	+	1	NA	NA	NA	51	NM_030255	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.025000	0.587065	
mm_142533.1	chr17	46487562	46487762	-	1	NA	NA	NA	13	NM_001162864	106763	Mm.297613	NM_175351	ENSMUSG00000015599	Ttbk1	AU017937|AW048023|C330008L01Rik	tau tubulin kinase 1	protein-coding	0.115000	0.691542	
mm_35672.1	chr4	43578559	43578759	-	1	NA	NA	NA	-76	NM_172866	242406	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	0.115000	0.731343	
mm_18119.1	chr2	44996925	44997125	-	1	NA	NA	NA	26152	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.437811	
mm_118655.1	chr14	21757672	21757872	+	1	NA	NA	NA	7241	NM_026283	67630	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	0.005000	0.457711	
mm_120473.1	chr14	65974158	65974358	+	1	NA	NA	NA	5775	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.000000	0.402985	
mm_92243.1	chr10	70288049	70288249	-	1	NA	NA	NA	42873	NM_025807	66859	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.025000	0.512438	
mm_11937.1	chr2	52857714	52857914	+	1	NA	NA	NA	-54	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.160000	0.805970	
mm_84997.1	chr9	86791936	86792136	-	1	NA	NA	NA	48403	NM_178738	244954	Mm.257629	NM_178738	ENSMUSG00000033491	Prss35	6030424L22Rik|P3D9	protease, serine 35	protein-coding	0.020000	0.487562	-93(CCCTTTATAGTT,+,0.00)
mm_122033.1	chr14	29722489	29722689	-	1	NA	NA	NA	-725	NM_009785	12294	Mm.386754	NM_009785	ENSMUSG00000021991	Cacna2d3	Cacnad3|alapha2delta3	calcium channel, voltage-dependent, alpha2/delta subunit 3	protein-coding	0.140000	0.741294	
mm_58776.1	chr7	16061687	16061887	+	1	NA	NA	NA	-10058	NM_001347559	666528	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.195000	0.820896	
mm_151031.1	chr19	47015110	47015310	+	1	NA	NA	NA	-21	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.185000	0.776119	
mm_49900.1	chr6	38941223	38941423	+	1	NA	NA	NA	22337	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.005000	0.502488	44(CTCCATAAATAG,-,0.00),46(CCATAAATAGAC,+,0.00)
mm_139340.1	chr17	49615028	49615228	+	1	NA	NA	NA	-44	NM_177052	319991	Mm.441340	NM_177052	ENSMUSG00000023999	Kif6	D130004B10Rik|D130084M03Rik	kinesin family member 6	protein-coding	0.060000	0.606965	
mm_139695.1	chr17	57444929	57445129	+	1	NA	NA	NA	86343	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.010000	0.517413	
mm_153303.1	chr19	37989612	37989812	-	1	NA	NA	NA	53865	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.000000	0.532338	
mm_57584.1	chr6	127152366	127152566	-	1	NA	NA	NA	-1418	NM_009829	12444	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.045000	0.646766	-84(CCCTTTTAAAGT,-,0.00),-83(CCTTTTAAAGTG,+,0.00),-34(TCGTTTAAAGGG,-,0.00)
mm_143806.1	chr17	83582156	83582356	-	1	NA	NA	NA	49639	NM_153512	225030	Mm.223506	NM_153512	ENSMUSG00000045053	Kcng3	KV6.3|Kv10.1a|Kv10.1b	potassium voltage-gated channel, subfamily G, member 3	protein-coding	0.010000	0.373134	-82(GCATTTATAGTG,+,0.00)
mm_65005.1	chr7	17056583	17056783	-	1	NA	NA	NA	-4	NM_016868	53417	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0.025000	0.631841	
mm_437.1	chr1	34678095	34678295	+	1	NA	NA	NA	-41985	NR_033627	241051	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	0.105000	0.701493	57(GCTTCTTTAAGG,-,0.00)
mm_2185.1	chr1	89015993	89016193	+	1	NA	NA	NA	-20	NR_040471	73475	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA	0.025000	0.467662	
mm_29766.1	chr3	127225805	127226005	-	1	NA	NA	NA	64600	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.060000	0.572139	
mm_48262.1	chr5	137871654	137871854	-	1	NA	NA	NA	4	NM_001024932	545812	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.010000	0.542289	
mm_147032.1	chr18	34746790	34746990	-	1	NA	NA	NA	4643	NM_009860	12532	Mm.286602	NM_009860	ENSMUSG00000044201	Cdc25c	Cdc25	cell division cycle 25C	protein-coding	0.005000	0.323383	
mm_129226.1	chr15	76612843	76613043	-	1	NA	NA	NA	3909	NM_028064	72027	Mm.276829	NM_028064	ENSMUSG00000063354	Slc39a4	1600025H15Rik|AU041686|AWMS2|ZIP4	solute carrier family 39 (zinc transporter), member 4	protein-coding	0.045000	0.597015	
mm_26073.1	chr3	136670194	136670394	+	1	NA	NA	NA	228	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.180000	0.786070	
mm_16366.1	chr2	174760689	174760889	+	1	NA	NA	NA	170	NM_007903	13616	Mm.9478	NM_007903	ENSMUSG00000027524	Edn3	ET-3|PPET3|ls|tmgc48	endothelin 3	protein-coding	0.085000	0.681592	
mm_136986.1	chr17	17234817	17235017	+	1	NA	NA	NA	-59526	NM_001324550	100862203	Mm.484235	NM_001324550		Gm6712	EG626854	predicted gene 6712	protein-coding	0.030000	0.497512	
mm_80004.1	chr9	67733866	67734066	+	1	NA	NA	NA	-4389	NR_106101	102465716		NR_106101	ENSMUSG00000098446	Mir7242	Gm27809|mmu-mir-7242	microRNA 7242	ncRNA	0.045000	0.587065	
mm_103137.1	chr11	70238214	70238414	-	1	NA	NA	NA	-400	NM_145758	104457	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	0.075000	0.601990	19(CTCTATTTAAAG,-,0.00),21(CTATTTAAAGAC,+,0.00)
mm_107823.1	chr12	69129745	69129945	+	1	NA	NA	NA	29341	NM_009093	20090	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0.025000	0.497512	
mm_108677.1	chr12	86679356	86679556	+	1	NA	NA	NA	756	NM_177354	238328	Mm.216101	NM_177354	ENSMUSG00000021256	Vash1	AI834978|D930046M13Rik|G630009D10Rik	vasohibin 1	protein-coding	0.070000	0.626866	
mm_21349.1	chr2	157114202	157114402	-	1	NA	NA	NA	20920	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.045000	0.437811	-75(GCTTATAAATAG,+,0.00),-17(CCGTATAAAGGC,-,0.00)
mm_23956.1	chr3	84925364	84925564	+	1	NA	NA	NA	-26747	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.010000	0.492537	86(GCCTTTTAAAAC,-,0.00),87(CCTTTTAAAACT,+,0.00)
mm_44988.1	chr5	37717050	37717250	-	1	NA	NA	NA	3	NM_022416	64293	Mm.103714	NM_022416	ENSMUSG00000029123	Stk32b	2510009F08Rik|STKG6|Stk32|YANK2	serine/threonine kinase 32B	protein-coding	0.055000	0.621891	
mm_74902.1	chr8	25201690	25201890	-	1	NA	NA	NA	-248	NM_177089	320165	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.140000	0.681592	
mm_70540.1	chr8	13039283	13039483	+	1	NA	NA	NA	2075	NM_001242368	14058	Mm.262589	NM_007972	ENSMUSG00000031444	F10	Cf10|fX	coagulation factor X	protein-coding	0.015000	0.537313	
mm_166024.1	chr4	124397538	124397738	+	1	NA	NA	NA	88321	NR_040774	78460	Mm.452060	NR_040774		1700057H15Rik	-	RIKEN cDNA 1700057H15 gene	ncRNA	0.010000	0.527363	
mm_39541.1	chr5	21543391	21543591	+	1	NA	NA	NA	-36	NM_028977	74511	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0.025000	0.487562	
mm_79754.1	chr9	62373459	62373659	+	1	NA	NA	NA	32216	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.040000	0.527363	
mm_6277.1	chr1	69683047	69683247	-	1	NA	NA	NA	2813	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.020000	0.412935	
mm_16458.1	chr2	180582689	180582889	+	1	NA	NA	NA	1485	NM_028479	73247	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	0.130000	0.746269	
mm_36200.1	chr4	62360232	62360432	-	1	NA	NA	NA	216	NM_001045528	338355	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.110000	0.661692	
mm_60117.1	chr7	35605579	35605779	+	1	NA	NA	NA	19432	NM_178263	245886	Mm.272620	NM_145633	ENSMUSG00000034867	Ankrd27	AA408090|BC016493|D330003H11Rik|Varp	ankyrin repeat domain 27 (VPS9 domain)	protein-coding	0.000000	0.398010	
mm_108590.1	chr12	85339599	85339799	+	1	NA	NA	NA	-337	NM_145138	217718	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.015000	0.422886	
mm_159948.1	chr6	85762389	85762589	-	1	NA	NA	NA	3255	NM_001037842	93674	Mm.440772	NM_053097	ENSMUSG00000051262	Nat8f3	4833414A14Rik|4930583K21Rik|Cml3	N-acetyltransferase 8 (GCN5-related) family member 3	protein-coding	0.000000	0.472637	
mm_66535.1	chr7	45154081	45154281	-	1	NA	NA	NA	-122	NM_029406	68845	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	0.090000	0.611940	
mm_7771.1	chr1	131200110	131200310	-	1	NA	NA	NA	-25	NM_001311094	54354	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.020000	0.616915	
mm_95423.1	chr11	50134310	50134510	+	1	NA	NA	NA	3050	NM_029745	76795	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.010000	0.437811	
mm_114575.1	chr13	75089809	75090009	+	1	NA	NA	NA	-78	NM_013628	18548	Mm.1333	NM_013628	ENSMUSG00000021587	Pcsk1	Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	0.035000	0.547264	
mm_162147.1	chrX	74740685	74740885	+	1	NA	NA	NA	-142	NM_001099306	628518	Mm.465110	NM_001099306	ENSMUSG00000079532	Gm6890	EG628518	predicted gene 6890	protein-coding	0.035000	0.537313	
mm_169725.1	chr15	79846928	79847128	+	1	NA	NA	NA	-12695	NM_001013362	504193	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	0.020000	0.517413	
mm_91076.1	chr10	19011706	19011906	-	1	NA	NA	NA	157	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.020000	0.462687	
mm_141581.1	chr17	32388923	32389123	-	1	NA	NA	NA	-73	NM_011717	22404	Mm.274948	NM_011717	ENSMUSG00000024050	Wiz	-	widely-interspaced zinc finger motifs	protein-coding	0.095000	0.756219	
mm_43958.1	chr5	145236832	145237032	+	1	NA	NA	NA	5173	NM_028298	72611	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	0.005000	0.323383	
mm_126243.1	chr15	79002225	79002425	+	1	NA	NA	NA	102	NR_105921	102465577		NR_105921	ENSMUSG00000099180	Mir6956	Gm27880|mmu-mir-6956	microRNA 6956	ncRNA	0.050000	0.641791	
mm_1157.1	chr1	60893444	60893644	+	1	NA	NA	NA	-15481	NM_009843	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.000000	0.487562	
mm_107243.1	chr12	26479106	26479306	+	1	NA	NA	NA	9991	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.000000	0.422886	
mm_131793.1	chr16	22898909	22899109	+	1	NA	NA	NA	-4623	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.040000	0.567164	
mm_45898.1	chr5	88675534	88675734	-	1	NA	NA	NA	-54	NM_001098476	231413	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.145000	0.726368	
mm_52756.1	chr6	120773518	120773718	+	1	NA	NA	NA	-150	NM_001081048	71803	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	0.005000	0.472637	72(GTCTTTATAGGA,+,0.00),72(GTCTTTATAGGA,-,0.00)
mm_1245.1	chr1	62798186	62798386	+	1	NA	NA	NA	-3554	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.000000	0.442786	-31(GCATTTATAGAA,+,0.00),17(CTCTTTAAAAGA,-,0.00),18(TCTTTAAAAGAA,+,0.00)
mm_3433.1	chr1	150101139	150101339	+	1	NA	NA	NA	1208	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.472637	
mm_164010.1	chr14	70145866	70146066	-	1	NA	NA	NA	7825	NM_146055	219158	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	0.025000	0.447761	-61(CTTTATATACTG,+,0.00)
mm_42934.1	chr5	122949433	122949633	+	1	NA	NA	NA	39566	NM_001003953	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.020000	0.557214	
mm_126087.1	chr15	77857831	77858031	+	1	NA	NA	NA	-15756	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.060000	0.601990	
mm_8484.1	chr1	153549723	153549923	-	1	NA	NA	NA	-109	NM_028749	74091	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0.070000	0.621891	
mm_73673.1	chr8	111522242	111522442	+	1	NA	NA	NA	-235	NM_176923	319481	Mm.247294	NM_176923	ENSMUSG00000031959	Wdr59	5430401O09Rik|Cdw12	WD repeat domain 59	protein-coding	0.035000	0.522388	
mm_92380.1	chr10	76442561	76442761	-	1	NA	NA	NA	251	NM_008787	18541	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	0.080000	0.656716	
mm_113668.1	chr13	42709410	42709610	+	1	NA	NA	NA	-71	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.015000	0.552239	
mm_21905.1	chr2	166398157	166398357	-	1	NA	NA	NA	-49194	NR_015558	319684	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.025000	0.547264	
mm_93108.1	chr10	91082592	91082792	-	1	NA	NA	NA	51	NM_001042558	11783	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	0.100000	0.701493	
mm_129002.1	chr15	74856132	74856332	-	1	NA	NA	NA	86	NM_009991	13072	Mm.377079	NM_009991	ENSMUSG00000022589	Cyp11b2	Cpn2|Cyp11b|Cyp11b-2	cytochrome P450, family 11, subfamily b, polypeptide 2	protein-coding	0.015000	0.542289	
mm_154750.1	chrX	10585461	10585661	+	1	NA	NA	NA	100445	NM_019634	21912	Mm.18590	NM_019634	ENSMUSG00000058254	Tspan7	1200014P11Rik|A15|AI323365|Cd231|Mxs1|PE31|R74651|TALLA|Tm4sf2	tetraspanin 7	protein-coding	0.015000	0.507463	
mm_109507.1	chr12	111452215	111452415	+	1	NA	NA	NA	9654	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.000000	0.462687	
mm_99655.1	chr11	105655464	105655664	+	1	NA	NA	NA	65578	NM_181071	77097	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.015000	0.532338	
mm_166042.1	chr4	130295334	130295534	-	1	NA	NA	NA	-13344	NM_010174	14077	Mm.388886	NM_010174	ENSMUSG00000028773	Fabp3	Fabph-1|Fabph-4|Fabph1|Fabph4|H-FABP|Mdgi	fatty acid binding protein 3, muscle and heart	protein-coding	0.025000	0.477612	
mm_21655.1	chr2	164356191	164356391	-	1	NA	NA	NA	216	NM_011414	20568	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	-	secretory leukocyte peptidase inhibitor	protein-coding	0.020000	0.577114	
mm_96538.1	chr11	68691863	68692063	+	1	NA	NA	NA	48	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.055000	0.631841	
mm_129144.1	chr15	76202137	76202337	-	1	NA	NA	NA	-1630	NM_201390	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.000000	0.592040	
mm_115412.1	chr13	114824539	114824739	+	1	NA	NA	NA	6402	NM_001113374	17434	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.010000	0.457711	
mm_83153.1	chr9	40456253	40456453	-	1	NA	NA	NA	-589	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.030000	0.562189	
mm_149638.1	chr19	17394715	17394915	+	1	NA	NA	NA	772	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.015000	0.457711	-73(TCTTTTAAAGTG,+,0.00)
mm_79939.1	chr9	65908893	65909093	+	1	NA	NA	NA	-17	NM_173185	214897	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	0.060000	0.631841	
mm_110719.1	chr12	69584463	69584663	-	1	NA	NA	NA	-1535	NM_001033236	207965	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0.025000	0.447761	-56(CTTTTTAGGGTG,+,0.00)
mm_27374.1	chr3	50443320	50443520	-	1	NA	NA	NA	193	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.025000	0.447761	
mm_101881.1	chr11	48927080	48927280	-	1	NA	NA	NA	2	NM_001045540	620913	Mm.452174	NM_001045540	ENSMUSG00000048852	Gm12185	Irgb2b1|OTTMUSG00000005523	predicted gene 12185	protein-coding	0.010000	0.462687	
mm_6308.1	chr1	71586129	71586329	-	1	NA	NA	NA	29073	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.025000	0.462687	
mm_146003.1	chr18	68691956	68692156	+	1	NA	NA	NA	-47344	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0.040000	0.373134	-19(GACTTTTAAAGT,-,0.00)
mm_30849.1	chr4	24972367	24972567	+	1	NA	NA	NA	-952	NM_030733	81006	Mm.160412	NM_030733	ENSMUSG00000040372	Gpr63	PSP24beta|Psp24-2	G protein-coupled receptor 63	protein-coding	0.005000	0.477612	
mm_127686.1	chr15	102966764	102966964	+	1	NA	NA	NA	68	NM_010462	209448	Mm.31665	NM_010462	ENSMUSG00000022484	Hoxc10	AI506621|Hox-3.6	homeobox C10	protein-coding	0.065000	0.557214	-32(CTCCTTAAAAAC,-,0.00),-30(CCTTAAAAACCC,+,0.00)
mm_11700.1	chr2	35979296	35979496	+	1	NA	NA	NA	228	NM_029774	74410	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0.145000	0.786070	
mm_59684.1	chr7	28440838	28441038	+	1	NA	NA	NA	1	NM_001039192	63986	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.000000	0.527363	
mm_36442.1	chr4	82362118	82362318	-	1	NA	NA	NA	143561	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.005000	0.373134	19(CCTTTTAGAGTT,+,0.00)
mm_58823.1	chr7	16714753	16714953	+	1	NA	NA	NA	-7076	NM_011927	26368	Mm.27096	NM_011927	ENSMUSG00000007209	Ceacam9	AA410097|AW545709|Cea-5|Cea5|mmCGM8	carcinoembryonic antigen-related cell adhesion molecule 9	protein-coding	0.015000	0.512438	
mm_83835.1	chr9	54223695	54223895	-	1	NA	NA	NA	-30353	NM_007810	13075	Mm.5199	NM_007810	ENSMUSG00000032274	Cyp19a1	Ar|ArKO|Cyp19|Int-5|Int5|p450arom	cytochrome P450, family 19, subfamily a, polypeptide 1	protein-coding	0.005000	0.442786	-26(GTATTTAAAGGG,+,0.00),-26(GTATTTAAAGGG,-,0.00)
mm_160857.1	chr11	58597426	58597626	+	1	NA	NA	NA	181	NM_001011743	257892	Mm.377288	NM_001011743	ENSMUSG00000056564	Olfr324	MOR102-2	olfactory receptor 324	protein-coding	0.020000	0.522388	
mm_117435.1	chr13	74617208	74617408	-	1	NA	NA	NA	-22564	NM_030711	80898	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0.030000	0.517413	
mm_160603.1	chr9	78257044	78257244	+	1	NA	NA	NA	15	NM_001243092	100042295	Mm.197422	NM_001243092	ENSMUSG00000111709	Gm3776	-	predicted gene 3776	protein-coding	0.005000	0.517413	
mm_55730.1	chr6	77227583	77227783	-	1	NA	NA	NA	-15034	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.010000	0.462687	
mm_115704.1	chr13	14522323	14522523	-	1	NA	NA	NA	803	NM_001081348	94253	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.025000	0.567164	-11(GCTTTTAGACAA,+,0.00)
mm_72670.1	chr8	84908588	84908788	+	1	NA	NA	NA	64	NM_010062	13423	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	0.070000	0.587065	11(CGGTTTTTAGGG,-,0.00),13(GTTTTTAGGGGA,+,0.00),61(TCTTTTAGAGTC,+,0.00)
mm_130548.1	chr15	98955373	98955573	-	1	NA	NA	NA	-1972	NM_011653	22142	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	0.010000	0.393035	
mm_70749.1	chr8	19516937	19517137	+	1	NA	NA	NA	21940	NM_139220	246080	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	0.005000	0.462687	34(CACTATATAAGG,-,0.00)
mm_630.1	chr1	40266519	40266719	+	1	NA	NA	NA	33	NM_001123382	16177	Mm.896	NM_008362	ENSMUSG00000026072	Il1r1	CD121a|CD121b|IL-1R1|IL-iR|Il1r-1	interleukin 1 receptor, type I	protein-coding	0.085000	0.731343	
mm_82840.1	chr9	31167539	31167739	-	1	NA	NA	NA	-35840	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.060000	0.552239	-1(CTTTATATATGG,+,0.00)
mm_54587.1	chr6	38147274	38147474	-	1	NA	NA	NA	-22788	NM_080467	140494	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	0.015000	0.507463	
mm_62778.1	chr7	112391159	112391359	+	1	NA	NA	NA	22951	NM_027587	100504195	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	0.015000	0.567164	
mm_68216.1	chr7	104409921	104410121	-	1	NA	NA	NA	-51375	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.005000	0.437811	52(CTGTCTTTAAGG,-,0.00)
mm_56638.1	chr6	113195284	113195484	-	1	NA	NA	NA	0	NM_177763	269788	Mm.37943	NM_177763	ENSMUSG00000042873	Lhfpl4	1190004M23Rik|AI604880|B230384L07|mKIAA4027	lipoma HMGIC fusion partner-like protein 4	protein-coding	0.140000	0.761194	
mm_94048.1	chr10	128179920	128180120	-	1	NA	NA	NA	277	NM_001039080	56516	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.005000	0.492537	
mm_69113.1	chr7	127025052	127025252	-	1	NA	NA	NA	1327	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.010000	0.592040	
mm_162302.1	chr1	36340775	36340975	-	1	NA	NA	NA	7883	NR_105863	102465541		NR_105863	ENSMUSG00000098680	Mir6898	Gm27816|mmu-mir-6898	microRNA 6898	ncRNA	0.010000	0.398010	
mm_108634.1	chr12	85715157	85715357	+	1	NA	NA	NA	28537	NM_016767	53314	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.000000	0.363184	
mm_63049.1	chr7	121864937	121865137	+	1	NA	NA	NA	-1	NM_001272023	20277	Mm.7709	NM_011325	ENSMUSG00000030873	Scnn1b	-	sodium channel, nonvoltage-gated 1 beta	protein-coding	0.050000	0.661692	
mm_91907.1	chr10	60219959	60220159	-	1	NA	NA	NA	-799	NM_016803	53374	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	0.020000	0.437811	-39(TCCTTTATAGAC,+,0.00)
mm_126641.1	chr15	83779882	83780082	+	1	NA	NA	NA	-41	NM_172610	223726	Mm.36395	NM_172610	ENSMUSG00000041708	Mpped1	6230403M19|AW456965|D15Bwg0669e	metallophosphoesterase domain containing 1	protein-coding	0.190000	0.880597	
mm_165897.1	chr4	46403853	46404053	-	1	NA	NA	NA	230	NM_053149	93966	Mm.25793	NM_053149	ENSMUSG00000028332	Hemgn	4921524M03Rik|AI317176|EDAG|Hgn|mNDR	hemogen	protein-coding	0.025000	0.532338	-94(GCTTTTAGGCTG,+,0.00)
mm_146991.1	chr18	34139248	34139448	-	1	NA	NA	NA	-81636	NM_007462	11789	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	0.000000	0.522388	
mm_64279.1	chr7	141812954	141813154	+	1	NA	NA	NA	24043	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.005000	0.582090	
mm_62030.1	chr7	91672547	91672747	+	1	NA	NA	NA	-389747	NM_001243046	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.025000	0.532338	
mm_119064.1	chr14	30819085	30819285	+	1	NA	NA	NA	-6409	NM_028839	69179	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	0.000000	0.323383	
mm_4822.1	chr1	185454710	185454910	+	1	NA	NA	NA	-38	NM_001033286	226781	Mm.227117	NM_001033286	ENSMUSG00000026614	Slc30a10	E130106K10Rik|Gm212	solute carrier family 30, member 10	protein-coding	0.035000	0.621891	
mm_9192.1	chr1	171173615	171173815	-	1	NA	NA	NA	18197	NM_001315500	17528	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0.005000	0.417910	
mm_21934.1	chr2	167056701	167056901	-	1	NA	NA	NA	-6133	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.010000	0.537313	
mm_71493.1	chr8	46755875	46756075	+	1	NA	NA	NA	16230	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.000000	0.467662	
mm_114108.1	chr13	54789887	54790087	+	1	NA	NA	NA	582	NM_028841	74257	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0.075000	0.656716	
mm_139639.1	chr17	57377140	57377340	+	1	NA	NA	NA	18554	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.328358	-67(TTCCCTTAAAGC,-,0.00)
mm_165593.1	chr3	35937377	35937577	-	1	NA	NA	NA	-4511	NM_001205361	114893	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.015000	0.522388	
mm_167785.1	chr9	120120611	120120811	+	1	NA	NA	NA	-7055	NM_011029	16785	Mm.4071	NM_011029	ENSMUSG00000032518	Rpsa	67kDa|67lr|AL022858|Lamr|Lamr1|Lamrl1|MLR|P40|P40-3|P40-8	ribosomal protein SA	protein-coding	0.015000	0.582090	
mm_114368.1	chr13	62778500	62778700	+	1	NA	NA	NA	7208	NM_001256065	380850	Mm.439823	NM_001256065	ENSMUSG00000091183	Gm5141	-	predicted gene 5141	protein-coding	0.015000	0.532338	
mm_96142.1	chr11	61022042	61022242	+	1	NA	NA	NA	-422	NM_001267593	16515	Mm.4970	NM_010603	ENSMUSG00000042529	Kcnj12	IRK-2|IRK2|Kir2.2|MB-IRK2	potassium inwardly-rectifying channel, subfamily J, member 12	protein-coding	0.105000	0.686567	
mm_124838.1	chr15	9335494	9335694	+	1	NA	NA	NA	-4	NM_144845	223337	Mm.422853	NM_144845	ENSMUSG00000049152	Ugt3a2	AI313915	UDP glycosyltransferases 3 family, polypeptide A2	protein-coding	0.000000	0.467662	
mm_128977.1	chr15	74833372	74833572	-	1	NA	NA	NA	8171	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.005000	0.388060	
mm_106988.1	chr12	10390776	10390976	+	1	NA	NA	NA	96	NM_023697	105014	Mm.119343	NM_023697	ENSMUSG00000020621	Rdh14	3110030G19Rik|AW215439|PAN2	retinol dehydrogenase 14 (all-trans and 9-cis)	protein-coding	0.080000	0.711443	
mm_126364.1	chr15	80097770	80097970	+	1	NA	NA	NA	6536	NM_207708	20972	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0.020000	0.502488	
mm_63870.1	chr7	135716685	135716885	+	1	NA	NA	NA	-406	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.055000	0.587065	-37(GCTCTAATAGGC,+,0.00)
mm_18957.1	chr2	76791136	76791336	-	1	NA	NA	NA	115921	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.020000	0.447761	
mm_110501.1	chr12	54289650	54289850	-	1	NA	NA	NA	56135	NR_108033	73592	Mm.416874	NR_108033		1700104L18Rik	-	RIKEN cDNA 1700104L18 gene	ncRNA	0.060000	0.527363	-33(CTCCTTAAGAGG,-,0.00)
mm_147264.1	chr18	38866987	38867187	-	1	NA	NA	NA	-25369	NM_001033789	545253	Mm.244585	NM_001033789	ENSMUSG00000036452	Gm5820	EG545253	predicted gene 5820	protein-coding	0.020000	0.457711	
mm_146190.1	chr18	76059415	76059615	+	1	NA	NA	NA	38956	NR_045365	73009	Mm.443541	NR_045365		2900057B20Rik	-	RIKEN cDNA 2900057B20 gene	ncRNA	0.085000	0.681592	
mm_80847.1	chr9	98296519	98296719	+	1	NA	NA	NA	36	NM_144533	74080	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	0.075000	0.656716	
mm_31632.1	chr4	59331902	59332102	+	1	NA	NA	NA	71951	NR_105031	101055769	Mm.421401	NR_105031		Gm12596	OTTMUSG00000007649	predicted gene 12596	ncRNA	0.010000	0.442786	
mm_49602.1	chr6	30740636	30740836	+	1	NA	NA	NA	-563	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.015000	0.552239	
mm_147542.1	chr18	53744636	53744836	-	1	NA	NA	NA	-189	NM_178686	225523	Mm.193678	NM_178686	ENSMUSG00000048799	Cep120	A230075C01|AU016693|Ccdc100	centrosomal protein 120	protein-coding	0.090000	0.651741	
mm_81200.1	chr9	107563166	107563366	+	1	NA	NA	NA	11	NM_019742	80385	Mm.21739	NM_019742	ENSMUSG00000010054	Tusc2	1190001E22Rik|AA407686|Fus1|Lgcc|PAP|Pdap2	tumor suppressor candidate 2	protein-coding	0.110000	0.681592	
mm_12526.1	chr2	72179918	72180118	+	1	NA	NA	NA	-105619	NM_023057	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.035000	0.497512	
mm_68743.1	chr7	121064233	121064433	-	1	NA	NA	NA	10197	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.005000	0.452736	
mm_102485.1	chr11	60220443	60220643	-	1	NA	NA	NA	84	NM_011480	20787	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP-1a|SREBP1|SREBP1c|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.105000	0.656716	
mm_78699.1	chr9	41210598	41210798	+	1	NA	NA	NA	4543	NR_040392	78500	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	0.015000	0.412935	-40(CCTTTAATAAGT,+,0.00)
mm_67926.1	chr7	99889247	99889447	-	1	NA	NA	NA	30129	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.015000	0.432836	
mm_11371.1	chr2	30995641	30995841	+	1	NA	NA	NA	13462	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.015000	0.522388	57(AGACTTAAAAGG,-,0.00)
mm_66268.1	chr7	36687669	36687869	-	1	NA	NA	NA	-10349	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.005000	0.398010	
mm_172437.1	chr7	29877794	29877994	+	1	NA	NA	NA	17915	NM_172740	233058	Mm.297657	NM_172740	ENSMUSG00000058402	Zfp420	B230119D13|B230312I18Rik|mszf59-1|mszf70	zinc finger protein 420	protein-coding	0.030000	0.502488	
mm_47055.1	chr5	116381502	116381702	-	1	NA	NA	NA	41262	NM_030704	80888	Mm.21549	NM_030704	ENSMUSG00000041548	Hspb8	AU018630|AW413033|Cryac|D5Ucla4|E2IG1|H11|H11K|HSP20-like|HSP22	heat shock protein 8	protein-coding	0.025000	0.497512	
mm_97529.1	chr11	78512133	78512333	+	1	NA	NA	NA	-63	NM_026389	67811	Mm.197493	NM_026389	ENSMUSG00000001100	Poldip2	1300003F06Rik|Pdip38	polymerase (DNA-directed), delta interacting protein 2	protein-coding	0.130000	0.771144	
mm_56135.1	chr6	87722671	87722871	-	1	NA	NA	NA	-8098	NM_001159697	58229	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.040000	0.611940	
mm_53752.1	chr6	145340925	145341125	+	1	NA	NA	NA	-46600	NR_003625	381827	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	0.060000	0.611940	
mm_56079.1	chr6	87228726	87228926	-	1	NA	NA	NA	106949	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.000000	0.477612	
mm_62636.1	chr7	107664586	107664786	+	1	NA	NA	NA	57842	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.015000	0.557214	-33(GAGTCTTAAAGG,-,0.00),-30(TCTTAAAGGGGC,+,0.00)
mm_158088.1	chrX	101273852	101274052	-	1	NA	NA	NA	-139	NM_021521	59024	Mm.20873	NM_021521	ENSMUSG00000079487	Med12	230kDa|Mopa|OPA-1|Tnrc11|Trap230	mediator complex subunit 12	protein-coding	0.080000	0.661692	
mm_38481.1	chr4	140703571	140703771	-	1	NA	NA	NA	2198	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.020000	0.527363	
mm_54520.1	chr6	35539654	35539854	-	1	NA	NA	NA	134	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.110000	0.671642	
mm_75634.1	chr8	64733444	64733644	-	1	NA	NA	NA	34	NM_025436	66234	Mm.30119	NM_025436	ENSMUSG00000031604	Msmo1	1500001G16Rik|C78600|DESP4|ERG25|Sc4mol	methylsterol monoxygenase 1	protein-coding	0.085000	0.696517	
mm_60093.1	chr7	35040410	35040610	+	1	NA	NA	NA	16056	NM_009884	12611	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.005000	0.577114	
mm_14968.1	chr2	152093366	152093566	+	1	NA	NA	NA	11937	NM_001160410	545474	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.155000	0.731343	
mm_84052.1	chr9	58158372	58158572	-	1	NA	NA	NA	82	NM_001195431	26968	Mm.367887	NM_012043	ENSMUSG00000037206	Islr	AW553146|Meflin	immunoglobulin superfamily containing leucine-rich repeat	protein-coding	0.015000	0.557214	
mm_108341.1	chr12	80211045	80211245	+	1	NA	NA	NA	49226	NM_134156	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.000000	0.472637	
mm_156374.1	chrX	139671680	139671880	+	1	NA	NA	NA	-13216	NM_001081499	245638	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	0.010000	0.412935	
mm_65802.1	chr7	28958080	28958280	-	1	NA	NA	NA	4100	NM_021895	60595	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.000000	0.402985	-75(CCTTTTAAAATG,+,0.00)
mm_110232.1	chr12	29531025	29531225	-	1	NA	NA	NA	2741	NM_008666	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.015000	0.422886	
mm_4818.1	chr1	185431839	185432039	+	1	NA	NA	NA	9880	NR_038006	319562	Mm.184335	NM_176943	ENSMUSG00000051295	9630028B13Rik	-	RIKEN cDNA 9630028B13 gene	ncRNA	0.025000	0.452736	-79(CCCTTTAAACTG,+,0.00),-49(GCCTATAAAAGA,-,0.00)
mm_144968.1	chr18	37824930	37825130	+	1	NA	NA	NA	5484	NM_033583	93708	Mm.247203	NM_033583	ENSMUSG00000102543	Pcdhgc5	-	protocadherin gamma subfamily C, 5	protein-coding	0.035000	0.587065	
mm_125808.1	chr15	74930923	74931123	+	1	NA	NA	NA	-24028	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.000000	0.452736	28(GGTTATTAAAAG,-,0.00)
mm_131532.1	chr16	17704492	17704692	+	1	NA	NA	NA	18308	NM_001285886	94112	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.000000	0.407960	71(TGATTTAAAAGG,-,0.00)
mm_46561.1	chr5	106925752	106925952	-	1	NA	NA	NA	38	NM_177873	330149	Mm.121664	NM_177873	ENSMUSG00000043410	Hfm1	A330009G12Rik|Gm1046|Mer3|Sec63d1	HFM1, ATP-dependent DNA helicase homolog	protein-coding	0.135000	0.711443	
mm_131121.1	chr16	5431303	5431503	+	1	NA	NA	NA	-175447	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.005000	0.527363	
mm_109752.1	chr12	117688655	117688855	+	1	NA	NA	NA	-155106	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.070000	0.646766	
mm_155907.1	chrX	101705910	101706110	+	1	NA	NA	NA	28137	NM_009910	12766	Mm.12876	NM_009910	ENSMUSG00000050232	Cxcr3	Cd183|Cmkar3	chemokine (C-X-C motif) receptor 3	protein-coding	0.015000	0.442786	
mm_112948.1	chr13	21008487	21008687	+	1	NA	NA	NA	64712	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.000000	0.502488	
mm_9079.1	chr1	168431519	168431719	-	1	NA	NA	NA	550	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.030000	0.507463	
mm_83437.1	chr9	44999170	44999370	-	1	NA	NA	NA	10320	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.010000	0.542289	
mm_161249.1	chr13	100786410	100786610	-	1	NA	NA	NA	-24	NM_172301	268697	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	0.085000	0.597015	
mm_15499.1	chr2	157901363	157901563	+	1	NA	NA	NA	-13190	NM_198627	277432	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0.075000	0.552239	
mm_4131.1	chr1	170309238	170309438	+	1	NA	NA	NA	477	NM_001039593	76925	Mm.33631	NM_001039593	ENSMUSG00000042800	1700015E13Rik	-	RIKEN cDNA 1700015E13 gene	protein-coding	0.000000	0.437811	
mm_140949.1	chr17	24527830	24528030	-	1	NA	NA	NA	8	NM_153792	224619	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	0.055000	0.517413	
mm_42754.1	chr5	120813621	120813821	+	1	NA	NA	NA	1083	NM_001083925	23961	Mm.233471	NM_001083925	ENSMUSG00000029605	Oas1b	Flv|L1|Mmu-L1|Oas1|Oias-2|Oias2|Wnv	2'-5' oligoadenylate synthetase 1B	protein-coding	0.005000	0.338308	
mm_140597.1	chr17	10294430	10294630	-	1	NA	NA	NA	24831	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.005000	0.343284	
mm_87503.1	chr10	52276720	52276920	+	1	NA	NA	NA	43201	NM_025705	66686	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	0.005000	0.487562	
mm_57224.1	chr6	123265801	123266001	-	1	NA	NA	NA	3794	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.010000	0.343284	
mm_13422.1	chr2	104559083	104559283	+	1	NA	NA	NA	-1	NR_040322	74959	Mm.417819	NR_040322	ENSMUSG00000086454	Platr14	4930500J02Rik	pluripotency associated transcript 14	ncRNA	0.025000	0.462687	
mm_160950.1	chr11	97149666	97149866	-	1	NA	NA	NA	-54	NM_198100	73174	Mm.27882	NM_198100	ENSMUSG00000038517	Tbkbp1	3110043L15Rik|ProSAPiP2|SINTBAD	TBK1 binding protein 1	protein-coding	0.005000	0.502488	-33(CCTTCTATAAGC,-,0.00)
mm_156826.1	chrX	164162118	164162318	+	1	NA	NA	NA	21738	NM_027286	70008	Mm.13451	NM_027286	ENSMUSG00000015405	Ace2	2010305L05Rik	angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	protein-coding	0.000000	0.383085	
mm_104167.1	chr11	87404302	87404502	-	1	NA	NA	NA	93	NM_053269	114714	Mm.37376	NM_053269	ENSMUSG00000007646	Rad51c	R51H3|Rad51l2	RAD51 paralog C	protein-coding	0.090000	0.567164	
mm_75489.1	chr8	48843787	48843987	-	1	NA	NA	NA	-169197	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.045000	0.482587	
mm_155689.1	chrX	94023717	94023917	+	1	NA	NA	NA	55161	NR_028320	385493	Mm.328014	NM_001033480	ENSMUSG00000081044	AU015836	-	expressed sequence AU015836	ncRNA	0.030000	0.482587	
mm_166144.1	chr5	3501605	3501805	-	1	NA	NA	NA	-42128	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.020000	0.517413	
mm_95017.1	chr11	32000361	32000561	+	1	NA	NA	NA	42	NM_008741	18197	Mm.3304	NM_008741	ENSMUSG00000020297	Nsg2	-	neuron specific gene family member 2	protein-coding	0.065000	0.636816	
mm_19263.1	chr2	84822434	84822634	-	1	NA	NA	NA	118	NM_024230	68678	Mm.33452	NM_024230	ENSMUSG00000027077	Smtnl1	1110030K22Rik|CHASM	smoothelin-like 1	protein-coding	0.025000	0.542289	
mm_38710.1	chr4	145215739	145215939	-	1	NA	NA	NA	-20834	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.020000	0.582090	
mm_140843.1	chr17	23674982	23675182	-	1	NA	NA	NA	-1312	NM_001008425	386612	Mm.328831	NM_001008425	ENSMUSG00000041319	Thoc6	F830014G06Rik|Wdr58	THO complex 6	protein-coding	0.015000	0.552239	
mm_142749.1	chr17	48450688	48450888	-	1	NA	NA	NA	713	NM_027292	70026	Mm.22613	NM_027292	ENSMUSG00000023995	Tspo2	2510027D20Rik|Bzrpl1	translocator protein 2	protein-coding	0.010000	0.527363	-59(TGCTCTAAAGAG,-,0.00)
mm_164862.1	chr18	53862298	53862498	+	1	NA	NA	NA	285	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.165000	0.756219	
mm_10489.1	chr2	14823967	14824167	+	1	NA	NA	NA	-25	NM_001252533	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.020000	0.467662	
mm_130539.1	chr15	98951168	98951368	-	1	NA	NA	NA	2233	NM_011653	22142	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	0.035000	0.537313	86(TGCCATATATGG,-,0.00)
mm_91482.1	chr10	34713425	34713625	-	1	NA	NA	NA	230125	NM_010237	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.000000	0.328358	
mm_34101.1	chr4	138973148	138973348	+	1	NA	NA	NA	343	NM_029857	77056	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	0.120000	0.756219	
mm_92675.1	chr10	80548619	80548819	-	1	NA	NA	NA	-9595	NM_026094	67331	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0.030000	0.656716	
mm_74805.1	chr8	22593723	22593923	-	1	NA	NA	NA	-10	NM_011696	22335	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	0.195000	0.776119	
mm_131035.1	chr16	3847157	3847357	+	1	NA	NA	NA	34	NM_001081217	385674	Mm.244261	NM_001081217	ENSMUSG00000054939	Zfp174	Gm1754	zinc finger protein 174	protein-coding	0.050000	0.661692	
mm_62857.1	chr7	114536700	114536900	+	1	NA	NA	NA	26172	NR_110407	244209	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0.010000	0.378109	
mm_89564.1	chr10	95415509	95415709	+	1	NA	NA	NA	-125	NM_001168656	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.045000	0.606965	
mm_103067.1	chr11	69858600	69858800	-	1	NA	NA	NA	30	NM_031880	83813	Mm.28874	NM_031880	ENSMUSG00000001583	Tnk1	Kos1|Tnk1a|Tnk1b	tyrosine kinase, non-receptor, 1	protein-coding	0.065000	0.661692	
mm_108892.1	chr12	100044512	100044712	+	1	NA	NA	NA	-67719	NM_008947	19179	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.005000	0.482587	
mm_68782.1	chr7	123286605	123286805	-	1	NA	NA	NA	71839	NM_146198	233836	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.025000	0.656716	
mm_56554.1	chr6	100671052	100671252	-	1	NA	NA	NA	5	NM_181590	72171	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	0.115000	0.656716	
mm_119204.1	chr14	32856695	32856895	+	1	NA	NA	NA	39	NM_178791	320736	Mm.187910	NM_178791	ENSMUSG00000050666	Vstm4	E130203B14Rik	V-set and transmembrane domain containing 4	protein-coding	0.095000	0.711443	
mm_11751.1	chr2	38472061	38472261	+	1	NA	NA	NA	-39536	NM_021606	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.015000	0.557214	
mm_57773.1	chr6	129237707	129237907	-	1	NA	NA	NA	238	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.020000	0.512438	
mm_107028.1	chr12	13102565	13102765	+	1	NA	NA	NA	146509	NM_134040	104721	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	0.000000	0.537313	
mm_21818.1	chr2	165283679	165283879	-	1	NA	NA	NA	4008	NM_001252574	228875	Mm.21184	NM_144893	ENSMUSG00000017664	Slc35c2	C85957|CGI-15|D2Wsu58e|Ovcov1	solute carrier family 35, member C2	protein-coding	0.005000	0.537313	
mm_137412.1	chr17	26113698	26113898	+	1	NA	NA	NA	482	NM_021793	60455	Mm.304656	NM_021793	ENSMUSG00000024180	Tmem8	AW490096|M83|Tmem8a	transmembrane protein 8 (five membrane-spanning domains)	protein-coding	0.085000	0.616915	
mm_89684.1	chr10	97517924	97518124	+	1	NA	NA	NA	35693	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.015000	0.318408	
mm_125332.1	chr15	38673812	38674012	+	1	NA	NA	NA	12008	NM_025494	66335	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.015000	0.457711	
mm_128105.1	chr15	27984681	27984881	-	1	NA	NA	NA	41067	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.010000	0.427861	
mm_99437.1	chr11	102432757	102432957	+	1	NA	NA	NA	2535	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.025000	0.552239	
mm_7250.1	chr1	93731814	93732014	-	1	NA	NA	NA	12	NM_001310761	67026	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	0.020000	0.422886	
mm_46161.1	chr5	96162429	96162629	-	1	NA	NA	NA	-539	NM_144910	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.070000	0.606965	
mm_45772.1	chr5	87091886	87092086	-	1	NA	NA	NA	569	NM_001029867	231396	Mm.439851	NM_001029867	ENSMUSG00000070704	Ugt2b36	-	UDP glucuronosyltransferase 2 family, polypeptide B36	protein-coding	0.005000	0.427861	
mm_63610.1	chr7	128203326	128203526	+	1	NA	NA	NA	-98	NR_045183	70973	Mm.441564	NR_045183	ENSMUSG00000108354	4931431B13Rik	1700108I23Rik|AA536668	RIKEN cDNA 4931431B13 gene	ncRNA	0.030000	0.542289	
mm_130965.1	chr15	103316438	103316638	-	1	NA	NA	NA	-6100	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.015000	0.562189	
mm_169210.1	chr13	66519551	66519751	+	1	NA	NA	NA	-78533	NM_001290196	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.015000	0.532338	
mm_17354.1	chr2	26608527	26608727	-	1	NA	NA	NA	-4210	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.020000	0.472637	
mm_40580.1	chr5	64102795	64102995	+	1	NA	NA	NA	9945	NM_025700	66681	Mm.2325	NM_025700	ENSMUSG00000029171	Pgm1	3230402E02Rik|Pgm-1|Pgm2	phosphoglucomutase 1	protein-coding	0.020000	0.497512	
mm_44774.1	chr5	32030954	32031154	-	1	NA	NA	NA	-105418	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.010000	0.412935	
mm_74118.1	chr8	123102290	123102490	+	1	NA	NA	NA	40	NM_016738	270106	Mm.319719	NM_016738	ENSMUSG00000000740	Rpl13	A52|L13	ribosomal protein L13	protein-coding	0.105000	0.631841	
mm_131315.1	chr16	11656027	11656227	+	1	NA	NA	NA	-123575	NR_126430	73761	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.005000	0.452736	
mm_131872.1	chr16	23175330	23175530	+	1	NA	NA	NA	28894	NM_009605	11450	Mm.3969	NM_009605	ENSMUSG00000022878	Adipoq	30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1	adiponectin, C1Q and collagen domain containing	protein-coding	0.000000	0.432836	
mm_154452.1	chrM	2075	2275	-	1	NA	NA	NA	NA	NA									0.020000	0.323383	
mm_20042.1	chr2	120137380	120137580	-	1	NA	NA	NA	17095	NM_133838	98878	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.020000	0.507463	
mm_162543.1	chr1	170110978	170111178	-	1	NA	NA	NA	-22134	NM_022563	18214	Mm.229249	NM_022563	ENSMUSG00000026674	Ddr2	AW495251|Ntrkr3|tyro10	discoidin domain receptor family, member 2	protein-coding	0.025000	0.487562	
mm_123755.1	chr14	70195972	70196172	-	1	NA	NA	NA	-3826	NM_001271409	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.005000	0.592040	
mm_162851.1	chr10	88459503	88459703	+	1	NA	NA	NA	16	NM_011517	20962	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	0.065000	0.611940	
mm_12493.1	chr2	71786970	71787170	+	1	NA	NA	NA	131	NM_001277970	16403	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	0.150000	0.805970	
mm_154846.1	chrX	20425269	20425469	+	1	NA	NA	NA	-319	NM_199317	382207	Mm.281517	NM_199317	ENSMUSG00000037315	Jade3	5730598B06|AI851988|AW544806|Phf16|mKIAA0215	jade family PHD finger 3	protein-coding	0.130000	0.771144	
mm_4049.1	chr1	165788606	165788806	+	1	NA	NA	NA	25	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.010000	0.577114	
mm_124478.1	chr14	121460416	121460616	-	1	NA	NA	NA	44738	NM_053079	56643	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	0.000000	0.472637	
mm_101207.1	chr11	19925405	19925605	-	1	NA	NA	NA	1063	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.145000	0.776119	
mm_14139.1	chr2	126231947	126232147	+	1	NA	NA	NA	79906	NM_026981	69185	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	0.005000	0.457711	
mm_120981.1	chr14	78732826	78733026	+	1	NA	NA	NA	-7837	NM_001081336	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.120000	0.726368	-34(GGCCATATAAGG,-,0.00),-32(CCATATAAGGCG,+,0.00)
mm_86361.1	chr9	123769410	123769610	-	1	NA	NA	NA	2299	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.015000	0.512438	
mm_43721.1	chr5	139479313	139479513	+	1	NA	NA	NA	5078	NM_133349	100494	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.025000	0.542289	
mm_65278.1	chr7	24333879	24334079	-	1	NA	NA	NA	-14	NM_001163810	69301	Mm.144202	NM_027028	ENSMUSG00000055826	Tescl	1700008P20Rik	tescalcin-like	protein-coding	0.055000	0.547264	
mm_15967.1	chr2	166068651	166068851	+	1	NA	NA	NA	76114	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.000000	0.452736	
mm_13531.1	chr2	110597237	110597437	+	1	NA	NA	NA	38	NM_001177624	241612	Mm.277148	NM_001003915	ENSMUSG00000041644	Slc5a12	AI315119|D630015G19|SMCT2	solute carrier family 5 (sodium/glucose cotransporter), member 12	protein-coding	0.010000	0.427861	
mm_5926.1	chr1	55226653	55226853	-	1	NA	NA	NA	29	NM_028713	74013	Mm.292050	NM_028713	ENSMUSG00000025978	Rftn2	2700010E02Rik|3222401M22Rik	raftlin family member 2	protein-coding	0.025000	0.497512	
mm_30019.1	chr3	135665249	135665449	-	1	NA	NA	NA	26198	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.015000	0.388060	-68(GCTTTTAAGGAT,+,0.00)
mm_87110.1	chr10	33197676	33197876	+	1	NA	NA	NA	58581	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.000000	0.328358	67(CCTTTTATATTA,+,0.00)
mm_7510.1	chr1	123718488	123718688	-	1	NA	NA	NA	326971	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.233831	
mm_6808.1	chr1	84157134	84157334	-	1	NA	NA	NA	61727	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.388060	
mm_91922.1	chr10	60300117	60300317	-	1	NA	NA	NA	15756	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.015000	0.522388	
mm_133500.1	chr16	90497109	90497309	+	1	NA	NA	NA	110812	NM_015755	26559	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.035000	0.567164	
mm_143941.1	chr17	86353760	86353960	-	1	NA	NA	NA	-66682	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.015000	0.552239	
mm_55129.1	chr6	50596532	50596732	-	1	NA	NA	NA	-42	NM_027564	70821	Mm.157323	NM_027564	ENSMUSG00000029828	4921507P07Rik	TISP74	RIKEN cDNA 4921507P07 gene	protein-coding	0.095000	0.711443	
mm_79944.1	chr9	65924112	65924312	+	1	NA	NA	NA	15202	NM_173185	214897	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	0.005000	0.358209	
mm_163287.1	chr11	118100273	118100473	-	1	NA	NA	NA	28846	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.020000	0.587065	
mm_10818.1	chr2	24350355	24350555	+	1	NA	NA	NA	5084	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.005000	0.398010	
mm_99573.1	chr11	104132719	104132919	+	1	NA	NA	NA	38	NM_001313929	12921	Mm.1892	NM_007762	ENSMUSG00000018634	Crhr1	CRF1R|CRFR1|Crhr	corticotropin releasing hormone receptor 1	protein-coding	0.075000	0.716418	
mm_144052.1	chr17	90599237	90599437	-	1	NA	NA	NA	-143457	NM_001346959	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.005000	0.338308	
mm_89726.1	chr10	98920480	98920680	+	1	NA	NA	NA	5428	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.000000	0.293532	58(CCTTTTAAATTT,+,0.00)
mm_7407.1	chr1	119421027	119421227	-	1	NA	NA	NA	1121	NM_008381	16324	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	0.165000	0.840796	
mm_43130.1	chr5	125305773	125305973	+	1	NA	NA	NA	35221	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.020000	0.621891	
mm_36916.1	chr4	108080688	108080888	-	1	NA	NA	NA	-6569	NR_105823	102465213		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	0.005000	0.328358	
mm_109252.1	chr12	109457986	109458186	+	1	NA	NA	NA	4631	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.025000	0.567164	
mm_76596.1	chr8	89052922	89053122	-	1	NA	NA	NA	-8860	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.020000	0.537313	
mm_33724.1	chr4	134065812	134066012	+	1	NA	NA	NA	-2540	NM_001162970	230806	Mm.240080	NM_001162970	ENSMUSG00000012123	Aim1l	-	absent in melanoma 1-like	protein-coding	0.045000	0.616915	
mm_108494.1	chr12	83682885	83683085	+	1	NA	NA	NA	-5578	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.005000	0.273632	
mm_54466.1	chr6	34907773	34907973	-	1	NA	NA	NA	2958	NM_001013366	101240	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.025000	0.527363	
mm_112266.1	chr12	114109377	114109577	-	1	NA	NA	NA	359989	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.000000	0.452736	
mm_171374.1	chr4	119282688	119282888	-	1	NA	NA	NA	11725	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.020000	0.452736	
mm_12908.1	chr2	84840256	84840456	+	1	NA	NA	NA	33	NM_024497	72401	Mm.22716	NM_024497	ENSMUSG00000027075	Slc43a1	2610016F07Rik|AA986141|Lat3|PB39|Pov1|R00504	solute carrier family 43, member 1	protein-coding	0.065000	0.606965	
mm_101757.1	chr11	43424743	43424943	-	1	NA	NA	NA	1138	NM_013917	30939	Mm.6856	NM_013917	ENSMUSG00000020415	Pttg1	AW555095|C87862|Pttg|Pttg3	pituitary tumor-transforming gene 1	protein-coding	0.025000	0.447761	
mm_137693.1	chr17	28952318	28952518	+	1	NA	NA	NA	-798	NM_025888	66989	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	0.145000	0.800995	
mm_11635.1	chr2	34776173	34776373	+	1	NA	NA	NA	4183	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.005000	0.417910	
mm_86537.1	chr10	7868776	7868976	+	1	NA	NA	NA	32495	NR_039563	100628581		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0.005000	0.388060	
mm_107099.1	chr12	17727174	17727374	+	1	NA	NA	NA	36460	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.015000	0.388060	
mm_151925.1	chr19	5799988	5800188	-	1	NA	NA	NA	2584	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.015000	0.487562	
mm_115490.1	chr13	3610991	3611191	-	1	NA	NA	NA	17	NM_134063	105203	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	0.115000	0.646766	
mm_9050.1	chr1	167285016	167285216	-	1	NA	NA	NA	11	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.100000	0.726368	
mm_109351.1	chr12	109608683	109608883	+	1	NA	NA	NA	-2717	NR_029770	723846		NR_029770	ENSMUSG00000070101	Mir341	Mirn341|mmu-mir-341	microRNA 341	ncRNA	0.005000	0.557214	
mm_161874.1	chr18	37089915	37090115	+	1	NA	NA	NA	-121	NM_001003671	353236	Mm.308500	NM_001003671	ENSMUSG00000103255	Pcdhac1	CNRc1	protocadherin alpha subfamily C, 1	protein-coding	0.070000	0.646766	
mm_74959.1	chr8	26089778	26089978	-	1	NA	NA	NA	7269	NR_110583	76604	Mm.437190	NR_110583	ENSMUSG00000085437	1700047A11Rik	4930554C15Rik	RIKEN cDNA 1700047A11 gene	ncRNA	0.000000	0.288557	
mm_77368.1	chr8	119810172	119810372	-	1	NA	NA	NA	30307	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.040000	0.567164	
mm_131768.1	chr16	22893068	22893268	+	1	NA	NA	NA	1153	NM_001276449	11625	Mm.197554	NM_013465	ENSMUSG00000022868	Ahsg	-	alpha-2-HS-glycoprotein	protein-coding	0.010000	0.457711	
mm_145948.1	chr18	67401640	67401840	+	1	NA	NA	NA	11009	NM_026473	67951	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	0.060000	0.587065	
mm_112370.1	chr12	119182199	119182399	-	1	NA	NA	NA	55977	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.000000	0.402985	
mm_22155.1	chr2	172806574	172806774	-	1	NA	NA	NA	133647	NM_007557	12162	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	0.010000	0.507463	
mm_115344.1	chr13	112508992	112509192	+	1	NA	NA	NA	45022	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.020000	0.527363	
mm_26639.1	chr3	153675266	153675466	+	1	NA	NA	NA	49767	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.035000	0.572139	
mm_146899.1	chr18	30459497	30459697	-	1	NA	NA	NA	186701	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding	0.025000	0.412935	
mm_97935.1	chr11	83648486	83648686	+	1	NA	NA	NA	792	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.030000	0.522388	
mm_109066.1	chr12	104345200	104345400	+	1	NA	NA	NA	6814	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.010000	0.502488	89(CTCTTTATGGCC,+,0.00)
mm_130461.1	chr15	98607525	98607725	-	1	NA	NA	NA	8	NM_007405	11512	Mm.157091	NM_007405	ENSMUSG00000022994	Adcy6	AC6|mKIAA0422	adenylate cyclase 6	protein-coding	0.010000	0.537313	
mm_80622.1	chr9	88731897	88732097	+	1	NA	NA	NA	-147	NM_007536	12047	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	0.000000	0.427861	
mm_105884.1	chr11	114930532	114930732	-	1	NA	NA	NA	3754	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.010000	0.417910	
mm_131675.1	chr16	20673120	20673320	+	1	NA	NA	NA	493	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.140000	0.810945	
mm_145265.1	chr18	52693569	52693769	+	1	NA	NA	NA	-10	NM_010293	14625	Mm.32242	NM_010293	ENSMUSG00000053624	Gykl1	AI449806|Gk-rs1	glycerol kinase-like 1	protein-coding	0.045000	0.577114	
mm_70317.1	chr8	4248132	4248332	+	1	NA	NA	NA	18	NM_001195258	100044509	Mm.439193	NM_001195258	ENSMUSG00000089736	Tgfbr3l	Gm14378|OTTMUSG00000016477	transforming growth factor, beta receptor III-like	protein-coding	0.035000	0.696517	
mm_31999.1	chr4	93334739	93334939	+	1	NA	NA	NA	672	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.120000	0.726368	
mm_121890.1	chr14	21742782	21742982	-	1	NA	NA	NA	-3	NM_013849	27389	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.005000	0.582090	
mm_55251.1	chr6	52909467	52909667	-	1	NA	NA	NA	53	NM_001168277	231986	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.000000	0.502488	
mm_155586.1	chrX	78953919	78954119	+	1	NA	NA	NA	216256	NM_001164739	70864	Mm.66681	NM_001164739	ENSMUSG00000078315	Fam47c	4921509A18Rik|Fam47a|Fam47a-ps	family with sequence similarity 47, member C	protein-coding	0.040000	0.626866	
mm_49599.1	chr6	30723428	30723628	+	1	NA	NA	NA	-9978	NM_001252293	17294	Mm.335639	NM_008590	ENSMUSG00000051855	Mest	AA408879|AI256745|Peg1	mesoderm specific transcript	protein-coding	0.015000	0.557214	
mm_36162.1	chr4	60421852	60422052	-	1	NA	NA	NA	0	NM_001281979	100038948	Mm.482231	NM_001126319	ENSMUSG00000078686	Mup9	Gm14076|Mup2|Mup6|OTTMUSG00000015595	major urinary protein 9	protein-coding	0.010000	0.442786	-34(GAGTATATAAGG,-,0.00)
mm_78254.1	chr9	21748339	21748539	+	1	NA	NA	NA	11847	NM_026282	67629	Mm.295642	NM_026282	ENSMUSG00000074476	Spc24	2410030K01Rik|AV109292|Spbc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	0.010000	0.437811	
mm_157524.1	chrX	50942706	50942906	-	1	NA	NA	NA	-96	NM_001190332	385354	Mm.393050	NM_001190332	ENSMUSG00000036131	Frmd7	EG665849|Gm1533	FERM domain containing 7	protein-coding	0.035000	0.611940	
mm_83132.1	chr9	40435049	40435249	-	1	NA	NA	NA	20615	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.005000	0.442786	
mm_170381.1	chr1	85600979	85601179	+	1	NA	NA	NA	376	NM_001013817	434484	Mm.445821	NM_001013817	ENSMUSG00000070031	Sp140	-	Sp140 nuclear body protein	protein-coding	0.005000	0.547264	
mm_172804.1	chr9	120129678	120129878	+	1	NA	NA	NA	-656	NR_002902	104433	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	0.005000	0.417910	
mm_145280.1	chr18	53176261	53176461	+	1	NA	NA	NA	-4	NM_026386	67804	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.100000	0.726368	
mm_35755.1	chr4	45815455	45815655	-	1	NA	NA	NA	11272	NM_018741	75426	Mm.3919	NM_018741	ENSMUSG00000035551	Igfbpl1	2810011G06Rik|2810453O06Rik|IGFBPL	insulin-like growth factor binding protein-like 1	protein-coding	0.020000	0.532338	
mm_87685.1	chr10	59323266	59323466	+	1	NA	NA	NA	70	NM_001316370	18451	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.100000	0.711443	-34(GAATATAAAAGG,-,0.00)
mm_84647.1	chr9	71485834	71486034	-	1	NA	NA	NA	49	NM_178602	28015	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	0.135000	0.696517	
mm_83644.1	chr9	49505065	49505265	-	1	NA	NA	NA	-13123	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.015000	0.402985	
mm_126619.1	chr15	83148165	83148365	+	1	NA	NA	NA	1071	NM_178627	73826	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0.015000	0.437811	
mm_79253.1	chr9	50739587	50739787	+	1	NA	NA	NA	-1952	NM_001311069	330938	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	0.020000	0.462687	
mm_115726.1	chr13	16261237	16261437	-	1	NA	NA	NA	249486	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.437811	
mm_117700.1	chr13	94789168	94789368	-	1	NA	NA	NA	325	NM_009321	21371	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0.125000	0.751244	
mm_35875.1	chr4	49536695	49536895	-	1	NA	NA	NA	12751	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.015000	0.492537	
mm_23078.1	chr3	36475904	36476104	+	1	NA	NA	NA	67	NM_028183	72282	Mm.55317	NM_028183	ENSMUSG00000027713	1810062G17Rik	-	RIKEN cDNA 1810062G17 gene	protein-coding	0.055000	0.592040	
mm_46166.1	chr5	96164031	96164231	-	1	NA	NA	NA	-2141	NM_144910	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.015000	0.492537	
mm_8371.1	chr1	150971162	150971362	-	1	NA	NA	NA	22173	NM_001024720	545370	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.005000	0.358209	73(TCTTTAAAACAC,+,0.00)
mm_120373.1	chr14	64587309	64587509	+	1	NA	NA	NA	-706	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA	0.070000	0.686567	
mm_171447.1	chr4	144742131	144742331	+	1	NA	NA	NA	-20827	NM_001085536	546849	Mm.457885	NM_001085536	ENSMUSG00000041735	Gm13178	Gm437|OTTMUSG00000010750	predicted gene 13178	protein-coding	0.005000	0.378109	
mm_84478.1	chr9	66834568	66834768	-	1	NA	NA	NA	38	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.075000	0.646766	
mm_2571.1	chr1	118469715	118469915	+	1	NA	NA	NA	-10550	NR_027901	68204	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.015000	0.462687	-37(GGCTATTTATGG,-,0.00),-35(CTATTTATGGGC,+,0.00),2(TGCTTTAAAAAG,-,0.00),3(GCTTTAAAAAGG,+,0.00),4(CTTTAAAAAGGA,+,0.00)
mm_20203.1	chr2	125123499	125123699	-	1	NA	NA	NA	61	NM_001162417	17876	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	0.165000	0.736318	
mm_41838.1	chr5	104325264	104325464	+	1	NA	NA	NA	35	NM_053172	94111	Mm.196672	NM_053172	ENSMUSG00000053863	Mepe	Of45	matrix extracellular phosphoglycoprotein with ASARM motif (bone)	protein-coding	0.025000	0.487562	
mm_56742.1	chr6	115838091	115838291	-	1	NA	NA	NA	221	NM_001110506	212516	Mm.333333	NM_198603	ENSMUSG00000030321	Efcab12	BB124106	EF-hand calcium binding domain 12	protein-coding	0.040000	0.527363	
mm_132368.1	chr16	34807108	34807308	+	1	NA	NA	NA	22258	NM_139300	107589	Mm.33360	NM_139300	ENSMUSG00000022836	Mylk	9530072E15Rik|A930019C19Rik|AW489456|KRP|MLCK108|MLCK210|Mlck|nmMlck|smMLCK	myosin, light polypeptide kinase	protein-coding	0.030000	0.562189	
mm_22189.1	chr2	173269343	173269543	-	1	NA	NA	NA	7090	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.020000	0.492537	
mm_124628.1	chr15	3637353	3637553	+	1	NA	NA	NA	-54101	NM_010284	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.005000	0.393035	17(TCTTTTATATCC,+,0.00)
mm_58067.1	chr6	136922084	136922284	-	1	NA	NA	NA	-4	NM_026983	69187	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding	0.005000	0.502488	
mm_117508.1	chr13	78200433	78200633	-	1	NA	NA	NA	-1660	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.020000	0.522388	47(CTCCATATAAGG,-,0.00),49(CCATATAAGGCA,+,0.00)
mm_162575.1	chr1	177258854	177259054	-	1	NA	NA	NA	-10187	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.135000	0.776119	
mm_145431.1	chr18	58836067	58836267	+	1	NA	NA	NA	-196	NM_175506	240322	Mm.71963	NM_175506	ENSMUSG00000053441	Adamts19	4831407I23Rik|AU015154|D230034E10Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	protein-coding	0.045000	0.592040	
mm_151826.1	chr19	5654183	5654383	-	1	NA	NA	NA	9424	NM_001164482	20469	Mm.3072	NM_011379	ENSMUSG00000056917	Sipa1	Spa1	signal-induced proliferation associated gene 1	protein-coding	0.055000	0.656716	
mm_84466.1	chr9	66592935	66593135	-	1	NA	NA	NA	80	NM_144937	235441	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.115000	0.681592	
mm_41826.1	chr5	104046847	104047047	+	1	NA	NA	NA	83	NM_028794	74167	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	0.175000	0.805970	
mm_172483.1	chr7	5124023	5124223	-	1	NA	NA	NA	1827	NM_009028	19428	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	0.015000	0.388060	-20(GACCTTAAAAAA,-,0.00)
mm_168775.1	chr12	17464523	17464723	-	1	NA	NA	NA	-80250	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.020000	0.542289	-79(CCTTTTATAAGT,+,0.00)
mm_123188.1	chr14	57890112	57890312	-	1	NA	NA	NA	50	NM_029492	75965	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|ENSMUSG00000055956|HK11	zinc finger, DHHC domain containing 20	protein-coding	0.090000	0.691542	
mm_140178.1	chr17	80896749	80896949	+	1	NA	NA	NA	56	NR_131127	320784	Mm.474182	NR_131127		C230072F16Rik	-	RIKEN cDNA C230072F16 gene	ncRNA	0.005000	0.407960	16(GGGTCTTAAAAG,-,0.00),17(GGTCTTAAAAGA,-,0.00)
mm_68001.1	chr7	100932452	100932652	-	1	NA	NA	NA	-391	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.055000	0.616915	
mm_135639.1	chr16	52355806	52356006	-	1	NA	NA	NA	97175	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.457711	
mm_33325.1	chr4	129105534	129105734	+	1	NA	NA	NA	86	NM_001290706	66260	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.110000	0.721393	
mm_6200.1	chr1	65186320	65186520	-	1	NA	NA	NA	59	NM_001111320	15926	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.060000	0.582090	
mm_168744.1	chr12	115359524	115359724	-	1	NA	NA	NA	336170	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.000000	0.407960	
mm_112482.1	chr13	5869367	5869567	+	1	NA	NA	NA	7978	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.015000	0.467662	
mm_67552.1	chr7	81566906	81567106	-	1	NA	NA	NA	-25	NM_172904	244091	Mm.38773	NM_172904	ENSMUSG00000038663	Fsd2	9830160G03Rik|Spryd1	fibronectin type III and SPRY domain containing 2	protein-coding	0.020000	0.557214	
mm_20912.1	chr2	150600305	150600505	-	1	NA	NA	NA	8118	NM_027977	71881	Mm.26599	NM_027977	ENSMUSG00000033096	Apmap	2310001A20Rik|AI314817	adipocyte plasma membrane associated protein	protein-coding	0.010000	0.517413	
mm_34780.1	chr4	154026103	154026303	+	1	NA	NA	NA	-159	NM_001163721	68859	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	0.030000	0.621891	
mm_62515.1	chr7	102222949	102223149	+	1	NA	NA	NA	21	NR_111937	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.080000	0.686567	-45(TCTTTAAGACCC,+,0.00)
mm_117299.1	chr13	67081429	67081629	-	1	NA	NA	NA	16	NM_001012448	432769	Mm.458849	NM_001012325	ENSMUSG00000058883	Zfp708	Rslcan11	zinc finger protein 708	protein-coding	0.055000	0.532338	
mm_24217.1	chr3	88646820	88647020	+	1	NA	NA	NA	6222	NM_181817	242093	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0.010000	0.567164	
mm_11646.1	chr2	34960915	34961115	+	1	NA	NA	NA	757	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.010000	0.492537	
mm_78663.1	chr9	40685894	40686094	+	1	NA	NA	NA	30	NM_133733	71566	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.055000	0.587065	
mm_122093.1	chr14	30626108	30626308	-	1	NA	NA	NA	0	NM_011103	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.130000	0.776119	
mm_79926.1	chr9	65630633	65630833	+	1	NA	NA	NA	151	NM_028030	71973	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	0.095000	0.701493	
mm_63499.1	chr7	127800560	127800760	+	1	NA	NA	NA	51	NM_001040684	101502	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	0.015000	0.592040	
mm_132585.1	chr16	38362118	38362318	+	1	NA	NA	NA	28	NM_022318	64082	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.040000	0.542289	
mm_143937.1	chr17	86230255	86230455	-	1	NA	NA	NA	56823	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.035000	0.522388	
mm_158924.1	chr1	59516129	59516329	+	1	NA	NA	NA	-35	NM_001013771	381260	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0.050000	0.557214	
mm_137430.1	chr17	26272859	26273059	+	1	NA	NA	NA	20049	NR_037905	66978	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	0.005000	0.348259	
mm_108493.1	chr12	83682824	83683024	+	1	NA	NA	NA	-5639	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.005000	0.333333	
mm_150607.1	chr19	40831205	40831405	+	1	NA	NA	NA	26	NM_172839	240665	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.165000	0.761194	
mm_77177.1	chr8	111690911	111691111	-	1	NA	NA	NA	-1	NM_025583	66473	Mm.34374	NM_025583	ENSMUSG00000031957	Ctrb1	2200008D09Rik|AI504462|Ctrb|Prt-2	chymotrypsinogen B1	protein-coding	0.010000	0.577114	-32(GGACATAAAAGA,-,0.00)
mm_69109.1	chr7	127021489	127021689	-	1	NA	NA	NA	-378	NM_001102563	69017	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.010000	0.507463	
mm_111174.1	chr12	83668391	83668591	-	1	NA	NA	NA	-20072	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.010000	0.313433	
mm_134845.1	chr16	26526732	26526932	-	1	NA	NA	NA	-61	NM_001101640	100043057	Mm.295917	NM_001101640	ENSMUSG00000091972	Tmem207	Gm540	transmembrane protein 207	protein-coding	0.005000	0.452736	
mm_132710.1	chr16	43503214	43503414	+	1	NA	NA	NA	-83118	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.020000	0.517413	
mm_167140.1	chr7	127730813	127731013	+	1	NA	NA	NA	-5297	NM_198858	244218	Mm.249829	NM_198858	ENSMUSG00000060034	Ctf2	Gm494|NP	cardiotrophin 2	protein-coding	0.000000	0.512438	
mm_59234.1	chr7	24778036	24778236	+	1	NA	NA	NA	932	NM_007675	26366	Mm.30300	NM_007675	ENSMUSG00000054169	Ceacam10	Bgp3|Cea10	carcinoembryonic antigen-related cell adhesion molecule 10	protein-coding	0.020000	0.492537	
mm_133325.1	chr16	78301617	78301817	+	1	NA	NA	NA	46	NM_001276263	13052	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	0.075000	0.681592	
mm_25612.1	chr3	118430234	118430434	+	1	NA	NA	NA	-3523	NR_029551	387155		NR_029551	ENSMUSG00000065569	Mir137	Mirn137|mir-137|mmu-mir-137	microRNA 137	ncRNA	0.055000	0.587065	
mm_6716.1	chr1	82317492	82317692	-	1	NA	NA	NA	1013	NM_029777	76867	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	0.030000	0.407960	
mm_2052.1	chr1	87404880	87405080	+	1	NA	NA	NA	-10251	NM_001110227	100040591	Mm.443539	NM_001110227	ENSMUSG00000079436	Kcnj13	-	potassium inwardly-rectifying channel, subfamily J, member 13	protein-coding	0.005000	0.417910	
mm_141898.1	chr17	34882004	34882204	-	1	NA	NA	NA	-4	NM_013484	12263	Mm.283217	NM_013484	ENSMUSG00000024371	C2	-	complement component 2 (within H-2S)	protein-coding	0.050000	0.582090	
mm_133605.1	chr16	91485164	91485364	+	1	NA	NA	NA	49	NM_010508	15975	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	CD118|Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.110000	0.726368	
mm_52467.1	chr6	114131138	114131338	+	1	NA	NA	NA	-3	NM_172890	243616	Mm.44683	NM_172890	ENSMUSG00000030307	Slc6a11	D930045G19Rik|E130202I16Rik|GAT4|Gabt4|Gat3	solute carrier family 6 (neurotransmitter transporter, GABA), member 11	protein-coding	0.155000	0.805970	
mm_5946.1	chr1	56782295	56782495	-	1	NA	NA	NA	-144944	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	0.025000	0.517413	
mm_129306.1	chr15	77533215	77533415	-	1	NA	NA	NA	0	NM_175391	108956	Mm.86391	NM_175391	ENSMUSG00000044309	Apol7c	2210421G13Rik	apolipoprotein L 7c	protein-coding	0.000000	0.442786	-33(GGGTATATAAGC,-,0.00)
mm_22547.1	chr3	9249918	9250118	+	1	NA	NA	NA	-549	NM_177660	229055	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0.070000	0.542289	
mm_89975.1	chr10	111594985	111595185	+	1	NA	NA	NA	-812	NR_045344	71321	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.030000	0.407960	-39(CCCTCTTTAAGA,-,0.00),-37(CTCTTTAAGAGC,-,0.00),-36(TCTTTAAGAGCT,+,0.00)
mm_61559.1	chr7	79504848	79505048	+	1	NA	NA	NA	-316	NR_029818	723968		NR_029818	ENSMUSG00000093238	Mir9-3	Mirn9-3|mir-9-3|mmu-mir-9-3	microRNA 9-3	ncRNA	0.125000	0.716418	
mm_12798.1	chr2	79644439	79644639	+	1	NA	NA	NA	9114	NM_080558	70599	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0.020000	0.482587	
mm_150913.1	chr19	46064065	46064265	+	1	NA	NA	NA	7626	NM_001081214	226169	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	0.045000	0.572139	
mm_53378.1	chr6	129512450	129512650	+	1	NA	NA	NA	-7	NM_001081186	330428	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	0.015000	0.477612	
mm_25386.1	chr3	107215911	107216111	+	1	NA	NA	NA	5721	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.532338	
mm_117270.1	chr13	64624695	64624895	-	1	NA	NA	NA	-127003	NM_001195435	68880	Mm.390594	NM_001195435	ENSMUSG00000096537	1190003K10Rik	-	RIKEN cDNA 1190003K10 gene	protein-coding	0.045000	0.527363	
mm_126971.1	chr15	93398284	93398484	+	1	NA	NA	NA	34	NM_175363	223828	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.155000	0.741294	-28(GCCTTTAGGGCG,+,0.00)
mm_102275.1	chr11	55395399	55395599	-	1	NA	NA	NA	24581	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.015000	0.422886	
mm_18215.1	chr2	49710711	49710911	-	1	NA	NA	NA	-76875	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.015000	0.477612	
mm_171812.1	chr5	134463123	134463323	+	1	NA	NA	NA	-6507	NM_001081464	57080	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.050000	0.487562	
mm_55927.1	chr6	84587549	84587749	-	1	NA	NA	NA	6161	NM_175475	232174	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.085000	0.666667	
mm_25774.1	chr3	126596314	126596514	+	1	NA	NA	NA	-537	NM_001293663	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.035000	0.477612	
mm_126730.1	chr15	85634813	85635013	+	1	NA	NA	NA	-53092	NM_009528	22422	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	0.075000	0.631841	
mm_54463.1	chr6	34893487	34893687	-	1	NA	NA	NA	-15522	NM_001135611	78412	Mm.248440	NM_199145	ENSMUSG00000046806	3110062M04Rik	AL023049|Mri	RIKEN cDNA 3110062M04 gene	protein-coding	0.005000	0.353234	54(ACTTTTAAAGTG,+,0.00)
mm_85406.1	chr9	103365635	103365835	-	1	NA	NA	NA	45	NM_175833	321022	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.135000	0.791045	
mm_167134.1	chr7	127050169	127050369	+	1	NA	NA	NA	1708	NM_026918	69036	Mm.21835	NM_026918	ENSMUSG00000049350	Zg16	1810010M01Rik|AI593689|ZG16p	zymogen granule protein 16	protein-coding	0.005000	0.482587	
mm_75781.1	chr8	70010942	70011142	-	1	NA	NA	NA	-14658	NM_145596	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.040000	0.472637	
mm_63168.1	chr7	124140423	124140623	+	1	NA	NA	NA	157342	NM_001252072	628779	Mm.40210	NM_001252072	ENSMUSG00000078591	Hs3st4	EG628779|Gm6915	heparan sulfate (glucosamine) 3-O-sulfotransferase 4	protein-coding	0.000000	0.253731	
mm_3024.1	chr1	133660943	133661143	+	1	NA	NA	NA	-158	NM_001166552	667118	Mm.245357	NM_001166552	ENSMUSG00000094410	Zbed6	Gm8466|MGR	zinc finger, BED type containing 6	protein-coding	0.070000	0.706468	
mm_165440.1	chr2	154202536	154202736	+	1	NA	NA	NA	2256	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.025000	0.552239	
mm_16746.1	chr2	9594074	9594274	-	1	NA	NA	NA	284426	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.035000	0.582090	
mm_128796.1	chr15	66812598	66812798	-	1	NA	NA	NA	19131	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.015000	0.552239	
mm_156272.1	chrX	136834077	136834277	+	1	NA	NA	NA	11431	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.010000	0.437811	
mm_140299.1	chr17	85621046	85621246	+	1	NA	NA	NA	312	NM_011381	20473	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0.010000	0.592040	
mm_55619.1	chr6	72234407	72234607	-	1	NA	NA	NA	1070	NM_153778	71093	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0.105000	0.621891	
mm_94635.1	chr11	16870921	16871121	+	1	NA	NA	NA	80261	NR_110421	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.025000	0.482587	
mm_91581.1	chr10	40142154	40142354	-	1	NA	NA	NA	0	NM_028247	72472	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.110000	0.736318	-34(CGCTTTTAAGAG,-,0.00),-33(GCTTTTAAGAGG,+,0.00),-32(CTTTTAAGAGGC,+,0.00)
mm_92275.1	chr10	71235228	71235428	-	1	NA	NA	NA	2716	NM_009360	21780	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	0.025000	0.562189	
mm_109881.1	chr12	4918179	4918379	-	1	NA	NA	NA	926	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.010000	0.502488	
mm_144911.1	chr18	37447558	37447758	+	1	NA	NA	NA	1	NM_053139	93885	Mm.196699	NM_053139	ENSMUSG00000044043	Pcdhb14	2210006M07Rik|Pcdhb17|PcdhbN	protocadherin beta 14	protein-coding	0.030000	0.422886	
mm_36422.1	chr4	81442649	81442849	-	1	NA	NA	NA	66	NM_010820	17475	Mm.153039	NM_010820	ENSMUSG00000028402	Mpdz	AI225843|B930003D11Rik|MUPP1	multiple PDZ domain protein	protein-coding	0.165000	0.781095	
mm_113352.1	chr13	31808741	31808941	+	1	NA	NA	NA	2195	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.040000	0.517413	
mm_54365.1	chr6	31126399	31126599	-	1	NA	NA	NA	-63406	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.015000	0.537313	
mm_77589.1	chr8	123882997	123883197	-	1	NA	NA	NA	11678	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.010000	0.502488	
mm_112087.1	chr12	112674280	112674480	-	1	NA	NA	NA	-104	NM_009652	11651	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.155000	0.805970	
mm_73342.1	chr8	105345241	105345441	+	1	NA	NA	NA	2629	NM_177699	234686	Mm.87724	NM_177699	ENSMUSG00000014778	Fhod1	BC017144|FHOS|FHOS1	formin homology 2 domain containing 1	protein-coding	0.000000	0.537313	-33(TGGCTTAAAAAG,-,0.00),-31(GCTTAAAAAGGA,+,0.00)
mm_137137.1	chr17	23604577	23604777	+	1	NA	NA	NA	3851	NM_001289482	332221	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	0.020000	0.537313	
mm_89905.1	chr10	111164776	111164976	+	1	NA	NA	NA	74	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.140000	0.736318	
mm_61949.1	chr7	90195358	90195558	+	1	NA	NA	NA	65226	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.005000	0.323383	
mm_100475.1	chr11	120145029	120145229	+	1	NA	NA	NA	6222	NM_001164799	72055	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0.015000	0.567164	
mm_126091.1	chr15	77905938	77906138	+	1	NA	NA	NA	22956	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.020000	0.442786	
mm_7279.1	chr1	97660927	97661127	-	1	NA	NA	NA	991	NM_133825	52392	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.130000	0.731343	
mm_123914.1	chr14	73362616	73362816	-	1	NA	NA	NA	22555	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.010000	0.398010	
mm_123072.1	chr14	55713393	55713593	-	1	NA	NA	NA	-1	NM_001161715	21816	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	0.065000	0.651741	
mm_78966.1	chr9	45281014	45281214	+	1	NA	NA	NA	-11965	NM_001324486	16154	Mm.379327	NM_008348	ENSMUSG00000032089	Il10ra	AW553859|CDw210|CDw210a|IL-10R1|IL-10RA|Il10r|mIL-10R	interleukin 10 receptor, alpha	protein-coding	0.005000	0.462687	
mm_59027.1	chr7	19303934	19304134	+	1	NA	NA	NA	6011	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.045000	0.626866	
mm_129382.1	chr15	78174000	78174200	-	1	NA	NA	NA	8	NM_025931	67042	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	0.035000	0.557214	
mm_67727.1	chr7	90129550	90129750	-	1	NA	NA	NA	-176	NR_046006	78329	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	0.030000	0.457711	
mm_117339.1	chr13	69534344	69534544	-	1	NA	NA	NA	-580	NM_001169131	210106	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.180000	0.815920	
mm_128406.1	chr15	44706356	44706556	-	1	NA	NA	NA	32	NM_001285842	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding	0.005000	0.487562	
mm_18625.1	chr2	68565310	68565510	-	1	NA	NA	NA	-17003	NM_177651	227998	Mm.67562	NM_177651	ENSMUSG00000053896	4933409G03Rik	-	RIKEN cDNA 4933409G03 gene	protein-coding	0.020000	0.502488	
mm_93396.1	chr10	107546991	107547191	-	1	NA	NA	NA	-52362	NM_008657	17878	Mm.11	NM_008657	ENSMUSG00000035923	Myf6	MRF4|bHLHc4|herculin	myogenic factor 6	protein-coding	0.000000	0.358209	
mm_21136.1	chr2	154212919	154213119	-	1	NA	NA	NA	-10723	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.020000	0.577114	
mm_103251.1	chr11	70970672	70970872	-	1	NA	NA	NA	572	NM_001252415	69723	Mm.275691	NM_027186	ENSMUSG00000018449	Rpain	2400006N03Rik|Rip	RPA interacting protein	protein-coding	0.060000	0.552239	
mm_12497.1	chr2	71814151	71814351	+	1	NA	NA	NA	27312	NM_001277970	16403	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	0.005000	0.517413	
mm_158836.1	chrX	168672446	168672646	-	1	NA	NA	NA	1356	NM_010832	17692	Mm.24248	NM_010832	ENSMUSG00000031358	Msl3	AU018931|Msl31|Msl3l1	male-specific lethal 3 homolog (Drosophila)	protein-coding	0.035000	0.477612	
mm_148786.1	chr19	6114756	6114956	+	1	NA	NA	NA	3730	NM_133678	66406	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.015000	0.567164	
mm_39490.1	chr5	20950864	20951064	+	1	NA	NA	NA	-25	NR_030699	320770	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.055000	0.502488	43(ATCTTTAAAAGA,-,0.00),44(TCTTTAAAAGAC,+,0.00)
mm_67703.1	chr7	89527442	89527642	-	1	NA	NA	NA	-9956	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.015000	0.492537	
mm_143574.1	chr17	74316032	74316232	-	1	NA	NA	NA	79	NM_001146224	66310	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0.070000	0.636816	
mm_36295.1	chr4	66346059	66346259	-	1	NA	NA	NA	58324	NM_019514	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding	0.000000	0.293532	
mm_73306.1	chr8	105170608	105170808	+	1	NA	NA	NA	34	NM_001161458	12400	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0.120000	0.766169	
mm_105368.1	chr11	103201675	103201875	-	1	NA	NA	NA	6773	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.015000	0.606965	
mm_39443.1	chr5	17142150	17142350	+	1	NA	NA	NA	-333872	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	0.010000	0.328358	
mm_56016.1	chr6	86525896	86526096	-	1	NA	NA	NA	169	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.170000	0.786070	
mm_94372.1	chr11	5099362	5099562	+	1	NA	NA	NA	189	NM_177370	279766	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0.100000	0.701493	
mm_87114.1	chr10	33256417	33256617	+	1	NA	NA	NA	-160	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.000000	0.378109	32(CCTTTTATAGCA,+,0.00)
mm_156262.1	chrX	136831012	136831212	+	1	NA	NA	NA	8366	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.010000	0.497512	
mm_153729.1	chr19	44407754	44407954	-	1	NA	NA	NA	-145	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.035000	0.567164	
mm_139.1	chr1	10993219	10993419	+	1	NA	NA	NA	-146	NM_029525	109294	Mm.123247	NM_029525	ENSMUSG00000048960	Prex2	6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	protein-coding	0.010000	0.477612	
mm_87301.1	chr10	42534905	42535105	+	1	NA	NA	NA	32951	NM_017472	54198	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.030000	0.497512	
mm_110219.1	chr12	28623360	28623560	-	1	NA	NA	NA	-130	NM_027866	71693	Mm.30724	NM_027866	ENSMUSG00000036655	Colec11	CL-K1	collectin sub-family member 11	protein-coding	0.010000	0.567164	
mm_111012.1	chr12	78980649	78980849	-	1	NA	NA	NA	2729	NM_001170401	268567	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.010000	0.542289	
mm_171221.1	chr3	59767199	59767399	+	1	NA	NA	NA	37513	NM_001101531	433597	Mm.297801	NM_001101531	ENSMUSG00000090527	Gm5538	-	predicted gene 5538	protein-coding	0.040000	0.507463	74(TGCCATAAAGGA,-,0.00)
mm_163109.1	chr11	70214887	70215087	+	1	NA	NA	NA	1077	NM_153081	216867	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0.065000	0.636816	
mm_137026.1	chr17	17882793	17882993	+	1	NA	NA	NA	1046	NM_013521	14293	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0.005000	0.343284	50(CCATTTATAGAG,+,0.00)
mm_61527.1	chr7	78916571	78916771	+	1	NA	NA	NA	2436	NM_001113527	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.025000	0.557214	
mm_61383.1	chr7	72326392	72326592	+	1	NA	NA	NA	-19897	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.000000	0.383085	
mm_145134.1	chr18	44828404	44828604	+	1	NA	NA	NA	-161	NM_001163013	240255	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178	YTH domain containing 2	protein-coding	0.185000	0.756219	
mm_90374.1	chr10	127181817	127182017	+	1	NA	NA	NA	-1272	NM_177615	216441	Mm.248373	NM_177615	ENSMUSG00000040441	Slc26a10	C78409|D630010I07	solute carrier family 26, member 10	protein-coding	0.010000	0.517413	
mm_61054.1	chr7	49910170	49910370	+	1	NA	NA	NA	-29	NM_001146013	104245	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	0.040000	0.462687	-93(CCCTTTAAAATC,+,0.00),-92(CCTTTAAAATCC,+,0.00)
mm_76519.1	chr8	87470573	87470773	-	1	NA	NA	NA	1919	NM_019626	12404	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0.055000	0.577114	
mm_95594.1	chr11	53332374	53332574	+	1	NA	NA	NA	7785	NM_026479	67966	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0.030000	0.567164	
mm_44728.1	chr5	31047904	31048104	-	1	NA	NA	NA	75	NM_177870	330064	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	0.070000	0.611940	
mm_937.1	chr1	55891988	55892188	+	1	NA	NA	NA	-39153	NR_045837	329159	Mm.98697	NR_045837	ENSMUSG00000099950	9130227L01Rik	-	RIKEN cDNA 9130227L01 gene	ncRNA	0.020000	0.457711	63(CTCTTTATAAAC,-,0.00)
mm_153562.1	chr19	42297985	42298185	-	1	NA	NA	NA	-17915	NR_037246	100526549		NR_037246	ENSMUSG00000093234	Mir3085	mir-3085|mmu-mir-3085	microRNA 3085	ncRNA	0.010000	0.552239	
mm_7995.1	chr1	134326852	134327052	-	1	NA	NA	NA	5976	NM_001144855	68507	Mm.295105	NM_001144855	ENSMUSG00000026458	Ppfia4	100042382|1110008G13Rik|AI448359|AI852265|C81506|Gm3812	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 4	protein-coding	0.025000	0.572139	
mm_107038.1	chr12	13564034	13564234	+	1	NA	NA	NA	63512	NR_136761	102639399	Mm.122052	NR_136761		Gm35725	-	predicted gene, 35725	ncRNA	0.005000	0.368159	
mm_19178.1	chr2	84389603	84389803	-	1	NA	NA	NA	35563	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.000000	0.407960	
mm_110493.1	chr12	53309751	53309951	-	1	NA	NA	NA	61174	NM_013780	27386	Mm.247044	NM_013780	ENSMUSG00000021010	Npas3	4930423H22Rik|bHLHe12	neuronal PAS domain protein 3	protein-coding	0.005000	0.393035	
mm_78484.1	chr9	32697833	32698033	+	1	NA	NA	NA	1891	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.000000	0.402985	
mm_148197.1	chr18	79109205	79109405	-	1	NA	NA	NA	86	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.170000	0.791045	
mm_168088.1	chr10	127620844	127621044	-	1	NA	NA	NA	204	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.055000	0.671642	
mm_152644.1	chr19	12527468	12527668	-	1	NA	NA	NA	-25572	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.015000	0.407960	
mm_65821.1	chr7	29156091	29156291	-	1	NA	NA	NA	19	NM_001146023	73833	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	0.080000	0.651741	
mm_10156.1	chr2	4389527	4389727	+	1	NA	NA	NA	-11349	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.020000	0.537313	
mm_94405.1	chr11	5793618	5793818	+	1	NA	NA	NA	5235	NM_013810	13169	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0.020000	0.592040	
mm_88715.1	chr10	80156769	80156969	+	1	NA	NA	NA	7187	NM_001305799	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.030000	0.582090	
mm_125430.1	chr15	44427307	44427507	+	1	NA	NA	NA	-704	NM_175009	223527	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	enhancer of yellow 2 homolog (Drosophila)	protein-coding	0.050000	0.557214	
mm_120996.1	chr14	79426497	79426697	+	1	NA	NA	NA	86	NM_001024135	211255	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	0.110000	0.651741	
mm_146251.1	chr18	77779772	77779972	+	1	NA	NA	NA	6104	NM_007505	11946	Mm.276137	NM_007505	ENSMUSG00000025428	Atp5a1	AI035633|AL022851|AL023067|Atpm|D18Ertd206e|Mom2	ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	protein-coding	0.035000	0.492537	
mm_83151.1	chr9	40456136	40456336	-	1	NA	NA	NA	-472	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.025000	0.582090	
mm_133993.1	chr16	4679625	4679825	-	1	NA	NA	NA	-5	NM_030205	78885	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0.060000	0.631841	
mm_77595.1	chr8	123892166	123892366	-	1	NA	NA	NA	2509	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.045000	0.587065	
mm_79106.1	chr9	46268596	46268796	+	1	NA	NA	NA	88	NM_080434	66113	Mm.29738	NM_080434	ENSMUSG00000032079	Apoa5	1300007O05Rik|Apoav|RAP3	apolipoprotein A-V	protein-coding	0.015000	0.562189	23(ATCCCTAAAAGG,-,0.00),25(CCCTAAAAGGGG,+,0.00)
mm_68584.1	chr7	116031007	116031207	-	1	NA	NA	NA	-60	NM_001025560	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.050000	0.621891	
mm_29246.1	chr3	107218094	107218294	-	1	NA	NA	NA	3538	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.502488	
mm_45701.1	chr5	83354834	83355034	-	1	NA	NA	NA	261	NM_153801	243078	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding	0.020000	0.447761	
mm_128539.1	chr15	54920027	54920227	-	1	NA	NA	NA	19	NM_015744	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.030000	0.532338	
mm_99167.1	chr11	100715169	100715369	+	1	NA	NA	NA	1419	NM_029307	75482	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.030000	0.412935	
mm_151018.1	chr19	46763329	46763529	+	1	NA	NA	NA	1820	NM_001102471	94219	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0.025000	0.442786	
mm_165261.1	chr2	73038355	73038555	-	1	NA	NA	NA	-58009	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.040000	0.676617	
mm_90200.1	chr10	120230261	120230461	+	1	NA	NA	NA	3301	NM_025431	66225	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.010000	0.477612	-6(TTTTTTAAAGGA,+,0.00)
mm_156704.1	chrX	159626958	159627158	+	1	NA	NA	NA	-214	NM_001135727	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.090000	0.691542	
mm_131287.1	chr16	11254406	11254606	+	1	NA	NA	NA	-61	NR_035466	100316833		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	0.095000	0.676617	
mm_12741.1	chr2	79065464	79065664	+	1	NA	NA	NA	-189862	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.005000	0.407960	
mm_64688.1	chr7	4515875	4516075	-	1	NA	NA	NA	0	NM_001277903	21955	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0.020000	0.567164	
mm_105662.1	chr11	107348104	107348304	-	1	NA	NA	NA	122516	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.040000	0.547264	
mm_108069.1	chr12	73941700	73941900	+	1	NA	NA	NA	-22730	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.010000	0.388060	
mm_16634.1	chr2	5760607	5760807	-	1	NA	NA	NA	-45945	NM_177343	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.020000	0.462687	
mm_41107.1	chr5	87775693	87775893	+	1	NA	NA	NA	1343	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.005000	0.353234	-28(GTTTTTATAGGA,+,0.00)
mm_135108.1	chr16	35769238	35769438	-	1	NA	NA	NA	18	NM_153550	224132	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0.135000	0.786070	
mm_34451.1	chr4	148038961	148039161	+	1	NA	NA	NA	-16	NM_010840	17769	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	5,10-methylenetetrahydrofolate reductase	protein-coding	0.110000	0.661692	
mm_29571.1	chr3	116968681	116968881	-	1	NA	NA	NA	171	NM_023245	114301	Mm.253736	NM_023245	ENSMUSG00000033377	Palmd	4631423C22Rik|PALML	palmdelphin	protein-coding	0.045000	0.577114	
mm_37178.1	chr4	117251785	117251985	-	1	NA	NA	NA	32	NM_001145637	381544	Mm.23504	NM_001033774	ENSMUSG00000060268	Gm1661	Gm1662|Ncrna00082	predicted gene 1661	protein-coding	0.070000	0.661692	
mm_14.1	chr1	4857678	4857878	+	1	NA	NA	NA	84	NM_011541	21399	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.120000	0.671642	
mm_66882.1	chr7	58740441	58740641	-	1	NA	NA	NA	82339	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.005000	0.422886	
mm_114226.1	chr13	56505804	56506004	+	1	NA	NA	NA	-16568	NM_001346732	213311	Mm.233904	NM_178674	ENSMUSG00000035509	Fbxl21	D630045D17Rik|FBL3B|FBXL3B|Psttm	F-box and leucine-rich repeat protein 21	protein-coding	0.045000	0.467662	
mm_112729.1	chr13	19193985	19194185	+	1	NA	NA	NA	201728	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.025000	0.507463	
mm_137196.1	chr17	23853430	23853630	+	1	NA	NA	NA	-242	NM_027220	69814	Mm.244143	NM_027220	ENSMUSG00000048992	Prss32	2010001P08Rik|mT5|tryptase-5	protease, serine 32	protein-coding	0.025000	0.577114	
mm_80672.1	chr9	90198605	90198805	+	1	NA	NA	NA	35727	NM_001311115	108153	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.015000	0.572139	
mm_156242.1	chrX	136244984	136245184	+	1	NA	NA	NA	4	NM_011712	22381	Mm.512	NM_011712	ENSMUSG00000042712	Wbp5	AL024233|Tceal9	WW domain binding protein 5	protein-coding	0.055000	0.587065	
mm_143762.1	chr17	81627646	81627846	-	1	NA	NA	NA	110641	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.000000	0.402985	
mm_113651.1	chr13	42304933	42305133	+	1	NA	NA	NA	3557	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.035000	0.507463	
mm_114487.1	chr13	69772680	69772880	+	1	NA	NA	NA	-32883	NM_001145162	76980	Mm.23960	NM_001145162	ENSMUSG00000052981	Ube2ql1	3110006E14Rik	ubiquitin-conjugating enzyme E2Q family-like 1	protein-coding	0.015000	0.497512	-35(CACTATAAAAGG,-,0.00)
mm_50064.1	chr6	41188223	41188423	+	1	NA	NA	NA	-113949	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.010000	0.417910	
mm_152879.1	chr19	24518642	24518842	-	1	NA	NA	NA	37085	NM_008846	18719	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	0.005000	0.462687	
mm_136084.1	chr16	84835487	84835687	-	1	NA	NA	NA	38	NM_016755	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.135000	0.726368	
mm_12777.1	chr2	79328678	79328878	+	1	NA	NA	NA	73352	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.005000	0.288557	
mm_26598.1	chr3	151731432	151731632	+	1	NA	NA	NA	18427	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.005000	0.343284	
mm_142113.1	chr17	35836955	35837155	-	1	NA	NA	NA	1246	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.065000	0.646766	
mm_120779.1	chr14	74641265	74641465	+	1	NA	NA	NA	525	NM_172812	15558	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	0.055000	0.462687	
mm_51342.1	chr6	72549077	72549277	+	1	NA	NA	NA	-96	NM_001042534	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.015000	0.547264	
mm_131087.1	chr16	4880592	4880792	+	1	NA	NA	NA	-841	NM_145359	207740	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.115000	0.696517	
mm_51132.1	chr6	68474482	68474682	+	1	NA	NA	NA	852592	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.467662	
mm_31203.1	chr4	43727154	43727354	+	1	NA	NA	NA	56	NM_027511	100039781	Mm.18796	NM_027511	ENSMUSG00000071001	Hrct1	3830408D24Rik	histidine rich carboxyl terminus 1	protein-coding	0.010000	0.577114	
mm_145010.1	chr18	38601412	38601612	+	1	NA	NA	NA	-244	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.065000	0.522388	
mm_92407.1	chr10	76711558	76711758	-	1	NA	NA	NA	14386	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.040000	0.567164	
mm_168108.1	chr10	14746081	14746281	-	1	NA	NA	NA	-14108	NM_008703	18101	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.015000	0.472637	
mm_132010.1	chr16	25861093	25861293	+	1	NA	NA	NA	59277	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.010000	0.432836	
mm_54693.1	chr6	39447478	39447678	-	1	NA	NA	NA	-27209	NM_018810	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.005000	0.437811	
mm_74958.1	chr8	26059278	26059478	-	1	NA	NA	NA	-23231	NR_110583	76604	Mm.437190	NR_110583	ENSMUSG00000085437	1700047A11Rik	4930554C15Rik	RIKEN cDNA 1700047A11 gene	ncRNA	0.005000	0.313433	-88(GTTTTTATACTC,+,0.00)
mm_142548.1	chr17	46590376	46590576	-	1	NA	NA	NA	-34314	NM_020493	20807	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0.015000	0.542289	
mm_18348.1	chr2	58160021	58160221	-	1	NA	NA	NA	1	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.025000	0.527363	-97(TCCTCTATAGGC,-,0.00)
mm_107643.1	chr12	52503978	52504178	+	1	NA	NA	NA	-11999	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0.165000	0.741294	
mm_153735.1	chr19	44446156	44446356	-	1	NA	NA	NA	-38547	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.000000	0.373134	
mm_162279.1	chr1	17097651	17097851	-	1	NA	NA	NA	138	NM_020604	57339	Mm.143761	NM_020604	ENSMUSG00000042686	Jph1	ENSMUSG00000054314|JP-1|Jp1	junctophilin 1	protein-coding	0.150000	0.761194	
mm_153468.1	chr19	41264232	41264432	-	1	NA	NA	NA	-328	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.055000	0.497512	
mm_129523.1	chr15	79164387	79164587	-	1	NA	NA	NA	3	NM_011437	20665	Mm.276739	NM_011437	ENSMUSG00000033006	Sox10	Dom|Sox21|gt	SRY (sex determining region Y)-box 10	protein-coding	0.025000	0.671642	
mm_69644.1	chr7	138909370	138909570	-	1	NA	NA	NA	36	NM_009760	12176	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	0.095000	0.721393	
mm_130023.1	chr15	88861901	88862101	-	1	NA	NA	NA	-193	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.105000	0.686567	
mm_14336.1	chr2	129592831	129593031	+	1	NA	NA	NA	92	NM_001291020	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.070000	0.661692	8(CACCTTAAGAGG,-,0.00)
mm_169913.1	chr16	55819670	55819870	-	1	NA	NA	NA	2368	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.010000	0.512438	
mm_71772.1	chr8	66468930	66469130	+	1	NA	NA	NA	17477	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.005000	0.348259	59(GTTTTTAAATGG,-,0.00)
mm_3373.1	chr1	138963663	138963863	+	1	NA	NA	NA	54	NM_001166501	329260	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.195000	0.835821	
mm_128676.1	chr15	60744817	60745017	-	1	NA	NA	NA	-78048	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0.015000	0.517413	
mm_29909.1	chr3	131474465	131474665	-	1	NA	NA	NA	-90203	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.020000	0.522388	
mm_83862.1	chr9	54734396	54734596	-	1	NA	NA	NA	53	NM_023191	66317	Mm.28437	NM_023191	ENSMUSG00000061559	Wdr61	2700038L12Rik|2810418I05Rik|REC14	WD repeat domain 61	protein-coding	0.080000	0.661692	
mm_155752.1	chrX	96167274	96167474	+	1	NA	NA	NA	71329	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.000000	0.462687	
mm_56649.1	chr6	113377721	113377921	-	1	NA	NA	NA	-292	NM_026552	68089	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	0.055000	0.626866	
mm_173058.1	chrX	125936896	125937096	+	1	NA	NA	NA	897008	NM_177705	237029	Mm.60998	NM_177705	ENSMUSG00000058670	4932411N23Rik	-	RIKEN cDNA 4932411N23 gene	protein-coding	0.035000	0.522388	
mm_104217.1	chr11	88349098	88349298	-	1	NA	NA	NA	-3575	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	0.025000	0.422886	
mm_88638.1	chr10	79926964	79927164	+	1	NA	NA	NA	21	NM_007880	13496	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.075000	0.601990	-17(TCATTTAAAGGG,+,0.00)
mm_66198.1	chr7	34230165	34230365	-	1	NA	NA	NA	71	NM_008155	14751	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	0.120000	0.711443	
mm_57759.1	chr6	129232844	129233044	-	1	NA	NA	NA	5101	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.025000	0.462687	
mm_56368.1	chr6	93913450	93913650	-	1	NA	NA	NA	140	NM_001286788	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.020000	0.507463	-85(GCTTAAATACAG,+,0.00),-37(TGATATAAAAGG,-,0.00)
mm_124168.1	chr14	93717943	93718143	-	1	NA	NA	NA	170845	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.005000	0.318408	
mm_130035.1	chr15	88978482	88978682	-	1	NA	NA	NA	-29	NM_133241	170790	Mm.32780	NM_133241	ENSMUSG00000035805	Mlc1	AW048630|BB074274|Kiaa0027-hp|LVM|MLC|VL|WKL1|mKIAA0027	megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	protein-coding	0.015000	0.487562	
mm_44578.1	chr5	24842415	24842615	-	1	NA	NA	NA	-154	NM_053075	19744	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.145000	0.681592	-35(CCCTTTAAAGTA,+,0.00)
mm_163121.1	chr11	75765392	75765592	+	1	NA	NA	NA	-30317	NR_136933	102641247	Mm.411386	NR_136932		Gm12339	OTTMUSG00000006218	predicted gene 12339	ncRNA	0.025000	0.402985	
mm_171225.1	chr3	61744480	61744680	-	1	NA	NA	NA	380073	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.015000	0.373134	
mm_38603.1	chr4	141859629	141859829	-	1	NA	NA	NA	-13370	NM_001033875	76701	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	0.040000	0.621891	-52(CGGCCTTTAAGG,-,0.00),-51(GGCCTTTAAGGA,-,0.00),-50(GCCTTTAAGGAG,+,0.00),-49(CCTTTAAGGAGC,+,0.00)
mm_40443.1	chr5	53591304	53591504	+	1	NA	NA	NA	918	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.025000	0.537313	
mm_4298.1	chr1	171787882	171788082	+	1	NA	NA	NA	20850	NM_013730	27218	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	0.015000	0.393035	
mm_90678.1	chr10	128909317	128909517	+	1	NA	NA	NA	72	NM_001282966	12512	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.025000	0.567164	
mm_115968.1	chr13	23967067	23967267	-	1	NA	NA	NA	24047	NM_145399	214189	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.000000	0.378109	
mm_122546.1	chr14	47993701	47993901	-	1	NA	NA	NA	94937	NR_045959	73961	Mm.390702	NR_045959		4930447J18Rik	4930425M13Rik	RIKEN cDNA 4930447J18 gene	ncRNA	0.015000	0.507463	-36(CACTATAAAAGG,-,0.00)
mm_93038.1	chr10	88354324	88354524	-	1	NA	NA	NA	2651	NM_027878	71712	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.015000	0.482587	
mm_95444.1	chr11	50236802	50237002	+	1	NA	NA	NA	1630	NM_001313968	17001	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.065000	0.691542	
mm_31993.1	chr4	89688002	89688202	+	1	NA	NA	NA	-96	NM_175647	242523	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	0.035000	0.631841	43(GCTCTTAGACCC,+,0.00)
mm_33758.1	chr4	134343503	134343703	+	1	NA	NA	NA	137	NM_001346578	230810	Mm.358876	NM_001039677	ENSMUSG00000028836	Slc30a2	ZnT-2|Znt2	solute carrier family 30 (zinc transporter), member 2	protein-coding	0.040000	0.616915	
mm_124434.1	chr14	118370309	118370509	-	1	NA	NA	NA	4531	NR_045624	73306	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	0.005000	0.532338	-35(CACTATAAAAGG,-,0.00)
mm_86216.1	chr9	120056225	120056425	-	1	NA	NA	NA	11971	NM_009987	13051	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	0.025000	0.482587	
mm_18818.1	chr2	74579335	74579535	-	1	NA	NA	NA	-487	NM_027133	69605	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	0.015000	0.472637	
mm_146738.1	chr18	15403526	15403726	-	1	NA	NA	NA	132	NM_001317729	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.025000	0.532338	
mm_124219.1	chr14	100284376	100284576	-	1	NA	NA	NA	-134680	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.045000	0.562189	
mm_7303.1	chr1	97977119	97977319	-	1	NA	NA	NA	70574	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA	0.080000	0.601990	
mm_163223.1	chr11	102097267	102097467	-	1	NA	NA	NA	3933	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.045000	0.562189	
mm_167157.1	chr7	132317151	132317351	-	1	NA	NA	NA	-96	NM_029935	77590	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.065000	0.592040	
mm_147042.1	chr18	34887237	34887437	-	1	NA	NA	NA	26130	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.115000	0.756219	
mm_48518.1	chr5	142901298	142901498	-	1	NA	NA	NA	5356	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.000000	0.462687	
mm_7179.1	chr1	92473705	92473905	-	1	NA	NA	NA	-47	NM_024197	67273	Mm.248778	NM_024197	ENSMUSG00000026260	Ndufa10	2900053E13Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10	protein-coding	0.120000	0.651741	
mm_13850.1	chr2	119604662	119604862	+	1	NA	NA	NA	10466	NR_015473	66602	Mm.379181	NR_015473	ENSMUSG00000085438	1700020I14Rik	1190006L01Rik|4933437I03Rik|AI451541|AI585852|AW538376|AW558897|Cyrano	RIKEN cDNA 1700020I14 gene	ncRNA	0.000000	0.388060	
mm_147472.1	chr18	46741418	46741618	-	1	NA	NA	NA	61	NM_026217	67526	Mm.9852	NM_026217	ENSMUSG00000032905	Atg12	4931423H11Rik|A330058M13Rik|Apg12l|Atg12l	autophagy related 12	protein-coding	0.075000	0.646766	
mm_71085.1	chr8	34805366	34805566	+	1	NA	NA	NA	-2144	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.050000	0.641791	
mm_62308.1	chr7	100227383	100227583	+	1	NA	NA	NA	-124	NM_027629	70974	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0.120000	0.686567	
mm_75962.1	chr8	71721932	71722132	-	1	NA	NA	NA	3649	NR_131256	74015	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.025000	0.616915	
mm_119267.1	chr14	34053067	34053267	+	1	NA	NA	NA	-303	NM_172808	239029	Mm.477093	NM_172808	ENSMUSG00000047441	Antxrl	1700112N15Rik|4933430J11	anthrax toxin receptor-like	protein-coding	0.005000	0.507463	
mm_21572.1	chr2	164236974	164237174	-	1	NA	NA	NA	1267	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.025000	0.422886	
mm_108595.1	chr12	85385913	85386113	+	1	NA	NA	NA	-11296	NM_026775	68581	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.015000	0.492537	
mm_149117.1	chr19	8967092	8967292	+	1	NA	NA	NA	151	NM_026007	67160	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	0.060000	0.616915	
mm_7117.1	chr1	90153301	90153501	-	1	NA	NA	NA	0	NM_029122	74918	Mm.317517	NM_029122	ENSMUSG00000026301	Iqca	4930465P12Rik|4930585L22Rik|BB288505|Iqca1	IQ motif containing with AAA domain	protein-coding	0.020000	0.611940	
mm_17680.1	chr2	32287932	32288132	-	1	NA	NA	NA	37	NR_110965	72931	Mm.27344	NM_175190	ENSMUSG00000044627	Swi5	1500019F05Rik|2900010J23Rik|AI046671	SWI5 recombination repair homolog (yeast)	protein-coding	0.100000	0.636816	
mm_86760.1	chr10	19679892	19680092	+	1	NA	NA	NA	-32595	NM_172786	237313	Mm.234667	NM_172786	ENSMUSG00000020007	Il20ra	E230031K19	interleukin 20 receptor, alpha	protein-coding	0.005000	0.303483	
mm_76976.1	chr8	106337903	106338103	-	1	NA	NA	NA	-15	NM_021491	58994	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0.110000	0.696517	
mm_54679.1	chr6	39419595	39419795	-	1	NA	NA	NA	81	NM_001311109	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.120000	0.666667	
mm_11218.1	chr2	29643697	29643897	+	1	NA	NA	NA	24077	NM_001039086	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.010000	0.552239	
mm_13673.1	chr2	116067132	116067332	+	1	NA	NA	NA	212	NM_001346047	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.100000	0.706468	
mm_170061.1	chr17	30624307	30624507	+	1	NA	NA	NA	2498	NR_045287	67522	Mm.254797	NR_045287	ENSMUSG00000099474	1700097N02Rik	-	RIKEN cDNA 1700097N02 gene	ncRNA	0.040000	0.587065	
mm_71234.1	chr8	40906610	40906810	+	1	NA	NA	NA	-19523	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.000000	0.273632	
mm_42696.1	chr5	119871394	119871594	+	1	NA	NA	NA	36831	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.025000	0.502488	
mm_101478.1	chr11	30954259	30954459	-	1	NA	NA	NA	-39	NM_023906	65257	Mm.440539	NM_023906	ENSMUSG00000020305	Asb3	2400011J03Rik|Asb-3	ankyrin repeat and SOCS box-containing 3	protein-coding	0.085000	0.651741	
mm_113695.1	chr13	43125763	43125963	+	1	NA	NA	NA	3024	NM_001005748	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.010000	0.487562	
mm_148609.1	chr19	5335525	5335725	+	1	NA	NA	NA	-116	NM_139301	225865	Mm.87321	NM_139301	ENSMUSG00000038498	Catsper1	Catsper|KSper	cation channel, sperm associated 1	protein-coding	0.020000	0.487562	
mm_91444.1	chr10	33933112	33933312	-	1	NA	NA	NA	18000	NM_028287	72580	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	0.015000	0.447761	
mm_72471.1	chr8	83389785	83389985	+	1	NA	NA	NA	43	NM_001329680	12745	Mm.358581	NM_009904	ENSMUSG00000002190	Clgn	4930459O04Rik|A2/6|AI528775|Cln	calmegin	protein-coding	0.110000	0.711443	
mm_43092.1	chr5	124451058	124451258	+	1	NA	NA	NA	4454	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.020000	0.562189	
mm_23250.1	chr3	51224776	51224976	+	1	NA	NA	NA	429	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.140000	0.746269	
mm_27627.1	chr3	60501645	60501845	-	1	NA	NA	NA	566	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.070000	0.616915	-82(CTCCATATAAGG,-,0.00),-80(CCATATAAGGCA,+,0.00)
mm_48428.1	chr5	140596493	140596693	-	1	NA	NA	NA	-10748	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.005000	0.517413	
mm_118827.1	chr14	25597511	25597711	+	1	NA	NA	NA	-5902	NM_001309430	100188919	Mm.473810	NM_001309430		Israa	-	immune system released activating agent	protein-coding	0.005000	0.502488	
mm_25457.1	chr3	108444186	108444386	+	1	NA	NA	NA	973	NM_011319	20226	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0.025000	0.462687	
mm_111451.1	chr12	98385731	98385931	-	1	NA	NA	NA	117196	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.000000	0.393035	
mm_24628.1	chr3	93560841	93561041	+	1	NA	NA	NA	5824	NM_009112	20194	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	0.020000	0.412935	
mm_83507.1	chr9	45984422	45984622	-	1	NA	NA	NA	349	NM_008775	18475	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0.115000	0.800995	
mm_84340.1	chr9	64178322	64178522	-	1	NA	NA	NA	-875	NM_183316	330959	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	0.010000	0.427861	
mm_41700.1	chr5	100846379	100846579	+	1	NA	NA	NA	250	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|Gpat3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding	0.060000	0.646766	
mm_125281.1	chr15	36438981	36439181	+	1	NA	NA	NA	57710	NM_175134	68839	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0.010000	0.313433	
mm_155612.1	chrX	83043329	83043529	+	1	NA	NA	NA	94559	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.005000	0.422886	
mm_161508.1	chr15	98341062	98341262	-	1	NA	NA	NA	-223	NM_146281	258278	Mm.377409	NM_146281	ENSMUSG00000051793	Olfr284	MOR160-4	olfactory receptor 284	protein-coding	0.015000	0.457711	
mm_124896.1	chr15	10358477	10358677	+	1	NA	NA	NA	-2	NM_001031851	268782	Mm.482244	NM_001031851	ENSMUSG00000089678	Agxt2	AI303810|AI663818	alanine-glyoxylate aminotransferase 2	protein-coding	0.015000	0.492537	
mm_2407.1	chr1	93803872	93804072	+	1	NA	NA	NA	7	NM_025454	66262	Mm.64065	NM_025454	ENSMUSG00000026283	Ing5	1700001C14Rik|1700027H23Rik|1810018M11Rik|AI225768	inhibitor of growth family, member 5	protein-coding	0.145000	0.711443	
mm_138471.1	chr17	35194049	35194249	+	1	NA	NA	NA	-358	NM_008518	16994	Mm.1715	NM_008518	ENSMUSG00000024399	Ltb	AI662801|LTbeta|Tnfc|Tnfsf3|Tnlg1c|p33	lymphotoxin B	protein-coding	0.045000	0.562189	
mm_1206.1	chr1	62726217	62726417	+	1	NA	NA	NA	23000	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.015000	0.457711	
mm_81527.1	chr9	110062697	110062897	+	1	NA	NA	NA	10776	NM_001311164	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.025000	0.532338	-32(CCTTAAAGGCCG,+,0.00)
mm_27960.1	chr3	79886709	79886909	-	1	NA	NA	NA	879	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.035000	0.547264	
mm_115462.1	chr13	119428468	119428668	+	1	NA	NA	NA	-32	NM_001079849	218693	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0.145000	0.731343	
mm_128788.1	chr15	66803986	66804186	-	1	NA	NA	NA	27743	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.020000	0.492537	
mm_152683.1	chr19	16036007	16036207	-	1	NA	NA	NA	51032	NR_045355	100502653	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0.010000	0.477612	
mm_88353.1	chr10	75933236	75933436	+	1	NA	NA	NA	-834	NM_008606	17385	Mm.4561	NM_008606	ENSMUSG00000000901	Mmp11	MMP-11|SL-3|ST3|Stmy3	matrix metallopeptidase 11	protein-coding	0.010000	0.522388	
mm_73290.1	chr8	104947242	104947442	+	1	NA	NA	NA	-14	NM_001079865	71903	Mm.442371	NM_001079865	ENSMUSG00000062826	Ces2f	2310038E17Rik|A430088E12	carboxylesterase 2F	protein-coding	0.015000	0.532338	
mm_2000.1	chr1	87126893	87127093	+	1	NA	NA	NA	1985	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.040000	0.572139	
mm_112262.1	chr12	113994845	113995045	-	1	NA	NA	NA	451037	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.000000	0.417910	
mm_158928.1	chr1	62010236	62010436	+	1	NA	NA	NA	371512	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0.035000	0.502488	
mm_17214.1	chr2	25493354	25493554	-	1	NA	NA	NA	457	NM_029958	77701	Mm.99123	NM_029958	ENSMUSG00000026943	Lcn12	9230102M18Rik	lipocalin 12	protein-coding	0.005000	0.587065	
mm_13985.1	chr2	121509759	121509959	+	1	NA	NA	NA	3136	NM_001290986	241627	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	0.060000	0.636816	
mm_69544.1	chr7	135695696	135695896	-	1	NA	NA	NA	20583	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.442786	
mm_134939.1	chr16	31171468	31171668	-	1	NA	NA	NA	29670	NM_030138	78618	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.000000	0.338308	
mm_116094.1	chr13	28772079	28772279	-	1	NA	NA	NA	-61306	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.015000	0.398010	-39(GTCCCTTAAAGA,-,0.00)
mm_155438.1	chrX	73494630	73494830	+	1	NA	NA	NA	-8356	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.020000	0.537313	
mm_114953.1	chr13	96924584	96924784	+	1	NA	NA	NA	-5	NM_001166065	218476	Mm.483490	NM_001166065	ENSMUSG00000091387	Gcnt4	C2gnt3|Gm279|Gm73	glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)	protein-coding	0.075000	0.631841	
mm_73216.1	chr8	96452869	96453069	+	1	NA	NA	NA	93004	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.005000	0.427861	
mm_166828.1	chr7	18606948	18607148	-	1	NA	NA	NA	9453	NM_020261	56868	Mm.333617	NM_020261	ENSMUSG00000074359	Psg23	1620401C02Rik|cea11	pregnancy-specific glycoprotein 23	protein-coding	0.010000	0.512438	
mm_66567.1	chr7	45239301	45239501	-	1	NA	NA	NA	-286	NM_001290804	12493	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0.020000	0.611940	-87(GCTTTTCTGGGG,+,0.00)
mm_128829.1	chr15	67176704	67176904	-	1	NA	NA	NA	78	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.105000	0.681592	
mm_23562.1	chr3	63241369	63241569	+	1	NA	NA	NA	-53966	NM_001289462	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.020000	0.497512	-32(CCATATAAAAAC,-,0.00)
mm_129161.1	chr15	76243049	76243249	-	1	NA	NA	NA	291	NM_001163576	671535	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0.025000	0.567164	
mm_121629.1	chr14	8317944	8318144	-	1	NA	NA	NA	-8268	NM_183187	268709	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0.040000	0.532338	
mm_126617.1	chr15	83121705	83121905	+	1	NA	NA	NA	996	NM_029101	74778	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.020000	0.532338	
mm_89707.1	chr10	97674646	97674846	+	1	NA	NA	NA	-18313	NM_025724	66716	Mm.56430	NM_025724	ENSMUSG00000047025	Ccer1	4921510H08Rik|AV259683	coiled-coil glutamate-rich protein 1	protein-coding	0.010000	0.358209	
mm_162440.1	chr1	112059091	112059291	+	1	NA	NA	NA	-194273	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0.000000	0.427861	
mm_143889.1	chr17	84419375	84419575	-	1	NA	NA	NA	46733	NM_183021	240174	Mm.246767	NM_177826	ENSMUSG00000024251	Thada	6530405K19|A930021O22|AU019899|BC052885|GITA	thyroid adenoma associated	protein-coding	0.015000	0.497512	
mm_70851.1	chr8	23448422	23448622	+	1	NA	NA	NA	37020	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding	0.010000	0.507463	23(CAGCATAAAAGG,-,0.00)
mm_55858.1	chr6	83455393	83455593	-	1	NA	NA	NA	899	NM_001347313	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.010000	0.547264	
mm_167720.1	chr9	100546186	100546386	+	1	NA	NA	NA	-152	NM_010878	17973	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0.095000	0.686567	
mm_102114.1	chr11	53300078	53300278	-	1	NA	NA	NA	301	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.135000	0.716418	
mm_100051.1	chr11	115170815	115171015	+	1	NA	NA	NA	7574	NM_012030	26941	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0.005000	0.472637	
mm_70411.1	chr8	11430996	11431196	+	1	NA	NA	NA	-46833	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.025000	0.462687	70(ATTTTTATAGAC,+,0.00)
mm_163338.1	chr12	13501135	13501335	+	1	NA	NA	NA	126411	NR_136761	102639399	Mm.122052	NR_136761		Gm35725	-	predicted gene, 35725	ncRNA	0.020000	0.492537	
mm_35951.1	chr4	53117875	53118075	-	1	NA	NA	NA	41920	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.005000	0.447761	29(CCTCATATGGGC,+,0.00)
mm_68656.1	chr7	118584605	118584805	-	1	NA	NA	NA	-19	NM_172476	209760	Mm.69380	NM_172476	ENSMUSG00000042246	Tmc7	1700030H01Rik|C230064B05|C630024K23Rik	transmembrane channel-like gene family 7	protein-coding	0.120000	0.746269	
mm_128018.1	chr15	24306817	24307017	-	1	NA	NA	NA	1106847	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.005000	0.308458	6(CCTCATAAAGCT,+,0.00)
mm_117590.1	chr13	89742175	89742375	-	1	NA	NA	NA	237	NM_001081249	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.065000	0.631841	
mm_101572.1	chr11	34228601	34228801	-	1	NA	NA	NA	-20612	NM_023907	14233	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	0.025000	0.537313	
mm_157135.1	chrX	9455128	9455328	-	1	NA	NA	NA	14096	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.025000	0.452736	
mm_99896.1	chr11	109650419	109650619	+	1	NA	NA	NA	-402	NM_021880	19084	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.065000	0.636816	
mm_126916.1	chr15	91199387	91199587	+	1	NA	NA	NA	-7680	NM_011994	26874	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.075000	0.676617	
mm_134575.1	chr16	20402181	20402381	-	1	NA	NA	NA	24113	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.010000	0.487562	
mm_132089.1	chr16	30944282	30944482	+	1	NA	NA	NA	137050	NM_198626	268880	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.020000	0.497512	
mm_125882.1	chr15	75642440	75642640	+	1	NA	NA	NA	25856	NM_011759	22701	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0.070000	0.621891	
mm_84331.1	chr9	64021935	64022135	-	1	NA	NA	NA	24	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.070000	0.562189	-94(CCTTTAAGAGTT,+,0.00)
mm_146980.1	chr18	33832715	33832915	-	1	NA	NA	NA	37923	NR_038151	69749	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.020000	0.497512	
mm_9524.1	chr1	173766892	173767092	-	1	NA	NA	NA	-73	NM_008329	15951	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.005000	0.462687	
mm_34489.1	chr4	148589829	148590029	+	1	NA	NA	NA	-1584	NM_009272	20810	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	0.015000	0.567164	-42(CACTATAAAAAG,-,0.00)
mm_172882.1	chr9	49325503	49325703	+	1	NA	NA	NA	-15059	NM_010077	13489	Mm.41970	NM_010077	ENSMUSG00000032259	Drd2	D2R|Drd-2	dopamine receptor D2	protein-coding	0.030000	0.482587	
mm_131066.1	chr16	4594769	4594969	+	1	NA	NA	NA	156	NM_031184	83396	Mm.134072	NM_031184	ENSMUSG00000014303	Glis2	Gli5|Klf16|Nkl	GLIS family zinc finger 2	protein-coding	0.150000	0.820896	
mm_23867.1	chr3	83028445	83028645	+	1	NA	NA	NA	2392	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.015000	0.447761	
mm_44055.1	chr5	148138011	148138211	+	1	NA	NA	NA	180791	NM_029920	77521	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	0.020000	0.393035	
mm_113579.1	chr13	40859858	40860058	+	1	NA	NA	NA	190	NM_023887	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.035000	0.517413	
mm_141006.1	chr17	24960506	24960706	-	1	NA	NA	NA	17	NM_198937	52009	Mm.371601	NM_198937	ENSMUSG00000024165	Hn1l	2810430B18Rik|AL022629|C16orf34|D17Ertd441e	hematological and neurological expressed 1-like	protein-coding	0.135000	0.746269	
mm_134183.1	chr16	10960949	10961149	-	1	NA	NA	NA	32072	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.045000	0.611940	
mm_97564.1	chr11	78936311	78936511	+	1	NA	NA	NA	11120	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.010000	0.522388	
mm_141976.1	chr17	35159302	35159502	-	1	NA	NA	NA	5475	NM_001199044	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.025000	0.562189	
mm_93784.1	chr10	120476807	120477007	-	1	NA	NA	NA	-438	NM_010441	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0.085000	0.646766	
mm_172911.1	chr9	61914409	61914609	-	1	NA	NA	NA	1	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.105000	0.621891	
mm_54484.1	chr6	35252998	35253198	-	1	NA	NA	NA	366	NR_027875	67705	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	0.065000	0.517413	
mm_37199.1	chr4	117825594	117825794	-	1	NA	NA	NA	-9564	NM_008135	14664	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	0.040000	0.527363	
mm_143153.1	chr17	57223091	57223291	-	1	NA	NA	NA	4945	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.025000	0.562189	
mm_76275.1	chr8	84147800	84148000	-	1	NA	NA	NA	-138	NM_001163752	74666	Mm.33625	NM_029045	ENSMUSG00000008129	4930432K21Rik	-	RIKEN cDNA 4930432K21 gene	protein-coding	0.085000	0.636816	
mm_81571.1	chr9	110420815	110421015	+	1	NA	NA	NA	1107	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.005000	0.517413	
mm_152998.1	chr19	30030232	30030432	-	1	NA	NA	NA	-181	NM_144873	109113	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0.080000	0.666667	
mm_106708.1	chr12	3806868	3807068	+	1	NA	NA	NA	-12	NM_007872	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.165000	0.815920	
mm_3774.1	chr1	156470670	156470870	+	1	NA	NA	NA	3558	NM_009230	20652	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0.015000	0.497512	-34(AGGTATAAAAGG,-,0.00)
mm_161445.1	chr15	73747954	73748154	+	1	NA	NA	NA	28	NM_008975	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.025000	0.562189	
mm_135581.1	chr16	50432282	50432482	-	1	NA	NA	NA	7	NM_027444	70508	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.075000	0.611940	-40(CCTTATATAAAA,+,0.00)
mm_11427.1	chr2	31950211	31950411	+	1	NA	NA	NA	8	NM_145144	108897	Mm.24838	NM_145144	ENSMUSG00000001864	Aif1l	2810003C17Rik|AI043124|C87647|Iba2	allograft inflammatory factor 1-like	protein-coding	0.100000	0.691542	
mm_50656.1	chr6	51470419	51470619	+	1	NA	NA	NA	-97	NM_007624	12417	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	0.135000	0.791045	
mm_61067.1	chr7	51457851	51458051	+	1	NA	NA	NA	-53078	NR_073508	233246	Mm.254431	NM_177694	ENSMUSG00000055489	Ano5	9330162L24|Gdd1|Tmem16e	anoctamin 5	protein-coding	0.045000	0.467662	
mm_70478.1	chr8	12395512	12395712	+	1	NA	NA	NA	93	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.140000	0.746269	
mm_86572.1	chr10	12608822	12609022	+	1	NA	NA	NA	252813	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.000000	0.447761	
mm_136329.1	chr16	92359326	92359526	-	1	NA	NA	NA	42	NM_008424	16509	Mm.299425	NM_008424	ENSMUSG00000039639	Kcne1	Isk|MinK|nmf190	potassium voltage-gated channel, Isk-related subfamily, member 1	protein-coding	0.030000	0.577114	
mm_142462.1	chr17	45596614	45596814	-	1	NA	NA	NA	-812	NM_001199114	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.020000	0.552239	
mm_823.1	chr1	47091061	47091261	+	1	NA	NA	NA	-237652	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.010000	0.542289	
mm_118930.1	chr14	27067295	27067495	+	1	NA	NA	NA	28394	NM_134437	171463	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	0.000000	0.457711	
mm_55510.1	chr6	69943594	69943794	-	1	NA	NA	NA	-616520	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.527363	
mm_96976.1	chr11	70652723	70652923	+	1	NA	NA	NA	1827	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.020000	0.487562	
mm_21842.1	chr2	165827932	165828132	-	1	NA	NA	NA	30141	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.035000	0.582090	
mm_121591.1	chr14	7858425	7858625	-	1	NA	NA	NA	40568	NM_134080	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.020000	0.542289	
mm_172244.1	chr6	69268358	69268558	-	1	NA	NA	NA	58716	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.343284	
mm_14534.1	chr2	132781543	132781743	+	1	NA	NA	NA	365	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.115000	0.756219	
mm_44078.1	chr5	149053102	149053302	+	1	NA	NA	NA	-145	NM_010439	15289	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.080000	0.636816	
mm_62187.1	chr7	97493970	97494170	+	1	NA	NA	NA	13114	NM_027256	101861	Mm.27383	NM_027256	ENSMUSG00000025133	Ints4	2610034N24Rik|AA692684|AW493223	integrator complex subunit 4	protein-coding	0.000000	0.358209	
mm_160971.1	chr11	99879087	99879287	+	1	NA	NA	NA	0	NM_001101613	670533	Mm.459090	NM_001101613	ENSMUSG00000059845	Gm11567	OTTMUSG00000002206	predicted gene 11567	protein-coding	0.000000	0.497512	-33(GGGTATAAAAGC,-,0.00)
mm_14237.1	chr2	127691800	127692000	+	1	NA	NA	NA	-35205	NM_001171187	17153	Mm.39040	NM_010762	ENSMUSG00000027375	Mal	Mpv17|Vip17	myelin and lymphocyte protein, T cell differentiation protein	protein-coding	0.030000	0.487562	
mm_145542.1	chr18	60807867	60808067	+	1	NA	NA	NA	-4109	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.030000	0.592040	
mm_78596.1	chr9	37401972	37402172	+	1	NA	NA	NA	175	NM_001309390	74144	Mm.485070	NM_028783	ENSMUSG00000032125	Robo4	1200012D01Rik|AI593217	roundabout guidance receptor 4	protein-coding	0.020000	0.587065	
mm_45231.1	chr5	53590481	53590681	-	1	NA	NA	NA	95	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.135000	0.741294	
mm_99450.1	chr11	102434048	102434248	+	1	NA	NA	NA	3826	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.025000	0.557214	
mm_170931.1	chr2	40555910	40556110	-	1	NA	NA	NA	-1329672	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding	0.010000	0.462687	
mm_134166.1	chr16	10796040	10796240	-	1	NA	NA	NA	683	NM_013637	19118	Mm.42733	NM_013637	ENSMUSG00000022501	Prm1	Prm-1	protamine 1	protein-coding	0.005000	0.477612	
mm_119580.1	chr14	50896328	50896528	+	1	NA	NA	NA	-3173	NM_001166651	546611	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	0.040000	0.542289	
mm_36296.1	chr4	66404345	66404545	-	1	NA	NA	NA	38	NM_019514	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding	0.095000	0.706468	
mm_45795.1	chr5	87538108	87538308	-	1	NA	NA	NA	-13	NM_019878	56362	Mm.23502	NM_019878	ENSMUSG00000029269	Sult1b1	ST1B1|St2b2	sulfotransferase family 1B, member 1	protein-coding	0.005000	0.427861	
mm_97878.1	chr11	83195437	83195637	+	1	NA	NA	NA	4207	NM_011409	20557	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	0.005000	0.502488	
mm_130946.1	chr15	103252676	103252876	-	1	NA	NA	NA	34	NM_001302339	18022	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.005000	0.477612	
mm_55275.1	chr6	54150942	54151142	-	1	NA	NA	NA	111110	NM_001163640	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.015000	0.517413	
mm_120738.1	chr14	73173530	73173730	+	1	NA	NA	NA	30845	NR_033185	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.010000	0.477612	
mm_158703.1	chrX	162122562	162122762	-	1	NA	NA	NA	36779	NM_001081052	195727	Mm.336313	NM_001081052	ENSMUSG00000059493	Nhs	Gm389|Gm48|Nhs1|Xcat	Nance-Horan syndrome (human)	protein-coding	0.020000	0.487562	
mm_101680.1	chr11	40680063	40680263	-	1	NA	NA	NA	12519	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.020000	0.427861	
mm_31849.1	chr4	74359985	74360185	+	1	NA	NA	NA	108206	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.000000	0.268657	-1(TCATTTAAGGAC,+,0.00)
mm_76757.1	chr8	95489940	95490140	-	1	NA	NA	NA	-1220	NM_009974	13000	Mm.51136	NM_009974	ENSMUSG00000046707	Csnk2a2	1110035J23Rik|C77789|CK2	casein kinase 2, alpha prime polypeptide	protein-coding	0.015000	0.512438	
mm_168872.1	chr12	37080204	37080404	+	1	NA	NA	NA	-28242	NM_008584	17286	Mm.341398	NM_008584	ENSMUSG00000036144	Meox2	AI528662|Gax|Mox-2|Mox2	mesenchyme homeobox 2	protein-coding	0.010000	0.482587	28(CCTTTTATAAGT,+,0.00)
mm_91609.1	chr10	41488802	41489002	-	1	NA	NA	NA	1438	NM_009213	20598	Mm.953	NM_009213	ENSMUSG00000019822	Smpd2	AW108287|nSMase|nSMase1	sphingomyelin phosphodiesterase 2, neutral	protein-coding	0.005000	0.502488	
mm_161514.1	chr15	98778026	98778226	-	1	NA	NA	NA	24	NM_011718	22410	Mm.4709	NM_011718	ENSMUSG00000022996	Wnt10b	Wnt12	wingless-type MMTV integration site family, member 10B	protein-coding	0.080000	0.676617	
mm_93051.1	chr10	88537189	88537389	-	1	NA	NA	NA	-33319	NM_001146690	212862	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	0.005000	0.427861	
mm_4508.1	chr1	174172734	174172934	+	1	NA	NA	NA	58	NM_011465	20739	Mm.200611	NM_011465	ENSMUSG00000026532	Spta1	AF093576|AI451697|Spna-1|Spna1|ha|ihj|nmf4|sph	spectrin alpha, erythrocytic 1	protein-coding	0.010000	0.427861	
mm_88369.1	chr10	75954435	75954635	+	1	NA	NA	NA	21	NM_198635	333669	Mm.31077	NM_198635	ENSMUSG00000033255	Gm5134	EG333669	predicted gene 5134	protein-coding	0.060000	0.601990	
mm_35910.1	chr4	49845652	49845852	-	1	NA	NA	NA	17	NM_001033351	242443	Mm.440095	NM_001033351	ENSMUSG00000039579	Grin3a	6430537F04|A830097C19Rik|NMDAR-L|NR3A|mKIAA1973	glutamate receptor ionotropic, NMDA3A	protein-coding	0.070000	0.626866	
mm_21212.1	chr2	155692228	155692428	-	1	NA	NA	NA	56	NM_019828	56407	Mm.234944	NM_019828	ENSMUSG00000038324	Trpc4ap	4833429F06Rik|D2Ertd113e|Trrp4ap|mFLJ00177|truss	transient receptor potential cation channel, subfamily C, member 4 associated protein	protein-coding	0.125000	0.711443	
mm_112033.1	chr12	111515632	111515832	-	1	NA	NA	NA	-22369	NM_178041	217869	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.000000	0.368159	
mm_146951.1	chr18	32559747	32559947	-	1	NA	NA	NA	187	NM_001347610	71683	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	0.080000	0.686567	
mm_59739.1	chr7	28813934	28814134	+	1	NA	NA	NA	3144	NM_177301	15388	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.050000	0.532338	
mm_146296.1	chr18	80173009	80173209	+	1	NA	NA	NA	-13130	NR_131039	105246506	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	0.005000	0.457711	62(GCTTTTATAAGC,+,0.00),62(GCTTTTATAAGC,-,0.00)
mm_136339.1	chr16	92602972	92603172	-	1	NA	NA	NA	94257	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.010000	0.432836	
mm_43998.1	chr5	146833058	146833258	+	1	NA	NA	NA	268	NM_019647	19933	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	0.120000	0.686567	
mm_88806.1	chr10	80755146	80755346	+	1	NA	NA	NA	40	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.120000	0.746269	
mm_119720.1	chr14	53945895	53946095	+	1	NA	NA	NA	307934	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.452736	
mm_9991.1	chr1	191370655	191370855	-	1	NA	NA	NA	26286	NM_144880	226849	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0.000000	0.412935	
mm_84378.1	chr9	65175646	65175846	-	1	NA	NA	NA	34557	NM_008988	19289	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0.015000	0.577114	
mm_53725.1	chr6	145048443	145048643	+	1	NA	NA	NA	269	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.085000	0.671642	
mm_41738.1	chr5	102724882	102725082	+	1	NA	NA	NA	-43828	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.015000	0.447761	
mm_110060.1	chr12	21286193	21286393	-	1	NA	NA	NA	-4	NM_018813	54451	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	0.090000	0.606965	
mm_1025.1	chr1	58754712	58754912	+	1	NA	NA	NA	24260	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.010000	0.547264	81(GTATTTATAGTG,+,0.00)
mm_107008.1	chr12	11438115	11438315	+	1	NA	NA	NA	-18	NR_045966	74712	Mm.399246	NR_045966	ENSMUSG00000097841	4930511A02Rik	-	RIKEN cDNA 4930511A02 gene	ncRNA	0.090000	0.631841	
mm_148419.1	chr19	3936203	3936403	+	1	NA	NA	NA	1117	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.035000	0.532338	
mm_72135.1	chr8	71908582	71908782	+	1	NA	NA	NA	76	NM_001166645	382019	Mm.251482	NM_001166645	ENSMUSG00000089857	Zfp882	ENSMUSG00000052439|Gm15468|OTTMUSG00000022410	zinc finger protein 882	protein-coding	0.065000	0.626866	
mm_146151.1	chr18	75000354	75000554	+	1	NA	NA	NA	-23	NM_001002239	319195	Mm.276337	NM_001002239	ENSMUSG00000062328	Rpl17	-	ribosomal protein L17	protein-coding	0.060000	0.512438	-57(CTTTCTAAAAGC,-,0.00)
mm_32269.1	chr4	102625055	102625255	+	1	NA	NA	NA	35312	NM_001177981	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.015000	0.517413	
mm_67343.1	chr7	79822227	79822427	-	1	NA	NA	NA	11600	NM_008589	17293	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0.030000	0.527363	
mm_58116.1	chr6	138426641	138426841	-	1	NA	NA	NA	3636	NR_126072	319702	Mm.403785	NR_126072	ENSMUSG00000089957	A830011K09Rik	-	RIKEN cDNA A830011K09 gene	ncRNA	0.025000	0.502488	
mm_20703.1	chr2	132945666	132945866	-	1	NA	NA	NA	270	NM_198029	241639	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0.030000	0.582090	
mm_94084.1	chr10	128493771	128493971	-	1	NA	NA	NA	15	NM_001317218	17904	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.050000	0.582090	
mm_48822.1	chr5	149051324	149051524	-	1	NA	NA	NA	192	NM_001313894	15289	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.095000	0.631841	
mm_5166.1	chr1	10057833	10058033	-	1	NA	NA	NA	19715	NM_026493	211660	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	0.010000	0.477612	
mm_139838.1	chr17	69159878	69160078	+	1	NA	NA	NA	3168	NM_013813	13823	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.025000	0.512438	
mm_76629.1	chr8	91801807	91802007	-	1	NA	NA	NA	-253	NM_008393	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.055000	0.562189	
mm_167585.1	chr9	46053322	46053522	+	1	NA	NA	NA	40602	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.005000	0.422886	
mm_25608.1	chr3	117634142	117634342	+	1	NA	NA	NA	59015	NM_001305451	75769	Mm.72187	NM_029425	ENSMUSG00000033342	Plppr5	4833424O15Rik|Lppr5|PRG-5|Pap2d	phospholipid phosphatase related 5	protein-coding	0.005000	0.412935	
mm_137019.1	chr17	17838366	17838566	+	1	NA	NA	NA	7491	NM_001162909	75202	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0.060000	0.641791	
mm_67927.1	chr7	99906112	99906312	-	1	NA	NA	NA	46994	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.000000	0.492537	
mm_80494.1	chr9	78479552	78479752	+	1	NA	NA	NA	2072	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.025000	0.437811	
mm_66550.1	chr7	45211743	45211943	-	1	NA	NA	NA	40	NM_015789	50722	Mm.27287	NM_015789	ENSMUSG00000030792	Dkkl1	AI414495|SGY|SGY-1|SGY1|Soggy|mSgy	dickkopf-like 1	protein-coding	0.085000	0.601990	
mm_146977.1	chr18	33825680	33825880	-	1	NA	NA	NA	30888	NR_038151	69749	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.020000	0.507463	-40(GGCCATTAAAGA,-,0.00)
mm_92314.1	chr10	75434359	75434559	-	1	NA	NA	NA	-15051	NR_045841	71125	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	0.015000	0.452736	
mm_113472.1	chr13	36486043	36486243	+	1	NA	NA	NA	248334	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.010000	0.398010	
mm_172889.1	chr9	54593564	54593764	-	1	NA	NA	NA	7153	NM_029573	67834	Mm.279195	NM_029573	ENSMUSG00000032279	Idh3a	1110003P10Rik|1500012E04Rik|AA407078|AI316514	isocitrate dehydrogenase 3 (NAD+) alpha	protein-coding	0.010000	0.442786	
mm_145984.1	chr18	68227895	68228095	+	1	NA	NA	NA	32978	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0.005000	0.507463	
mm_3303.1	chr1	137289675	137289875	+	1	NA	NA	NA	-329327	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	0.030000	0.502488	-33(GAGTATAAATAG,-,0.00)
mm_129587.1	chr15	79774341	79774541	-	1	NA	NA	NA	26	NM_017470	54152	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	0.080000	0.616915	
mm_119171.1	chr14	32141923	32142123	+	1	NA	NA	NA	0	NM_020597	17695	Mm.2540	NM_020597	ENSMUSG00000021907	Msmb	PIP|PSP94|beta-MSP	beta-microseminoprotein	protein-coding	0.010000	0.457711	
mm_171861.1	chr5	22563692	22563892	+	1	NA	NA	NA	13379	NR_102315	320719	Mm.459265	NR_102315	ENSMUSG00000097207	6030443J06Rik	1700030G06Rik	RIKEN cDNA 6030443J06 gene	ncRNA	0.015000	0.457711	
mm_166980.1	chr7	45277276	45277476	+	1	NA	NA	NA	-5497	NM_001033176	76713	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0.110000	0.686567	
mm_130606.1	chr15	99819930	99820130	-	1	NA	NA	NA	119	NM_023063	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.020000	0.512438	
mm_139805.1	chr17	66206719	66206919	+	1	NA	NA	NA	83299	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.005000	0.502488	
mm_138320.1	chr17	34837082	34837282	+	1	NA	NA	NA	163	NM_001163770	112403	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	0.075000	0.606965	
mm_71125.1	chr8	36458002	36458202	+	1	NA	NA	NA	-31089	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding	0.110000	0.656716	
mm_50168.1	chr6	41554632	41554832	+	1	NA	NA	NA	32956	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.477612	-87(GTCTCTAAAGGG,-,0.00)
mm_71765.1	chr8	66420270	66420470	+	1	NA	NA	NA	34069	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.010000	0.412935	-85(TGCTTTATATGC,-,0.00)
mm_6708.1	chr1	82286757	82286957	-	1	NA	NA	NA	4582	NM_010570	16367	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.025000	0.562189	83(GCGTTTTTATGG,-,0.00),85(GTTTTTATGGTG,+,0.00)
mm_55084.1	chr6	49214752	49214952	-	1	NA	NA	NA	102	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.080000	0.621891	
mm_171642.1	chr4	31885714	31885914	+	1	NA	NA	NA	-78293	NM_009316	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.025000	0.482587	
mm_62724.1	chr7	110773756	110773956	+	1	NA	NA	NA	1252	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.020000	0.552239	-93(GCCTTTAGGGCC,+,0.00)
mm_162897.1	chr10	112837609	112837809	+	1	NA	NA	NA	91317	NM_001033474	382423	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132|ENSMUSG00000074747	ataxin 7-like 3B	protein-coding	0.005000	0.383085	-95(CTCTTTTAAAGT,-,0.00),-94(TCTTTTAAAGTT,+,0.00)
mm_15810.1	chr2	164497439	164497639	+	1	NA	NA	NA	14	NM_133779	78928	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	0.110000	0.671642	
mm_129550.1	chr15	79429757	79429957	-	1	NA	NA	NA	11961	NM_001289899	27373	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.040000	0.621891	
mm_139297.1	chr17	48319135	48319335	+	1	NA	NA	NA	3073	NM_177083	320148	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.010000	0.532338	
mm_161605.1	chr16	43906805	43907005	+	1	NA	NA	NA	17003	NM_027801	212153	Mm.209835	NM_027801	ENSMUSG00000022701	Ccdc191	2610015P09Rik|8430422M09Rik|AU040712	coiled-coil domain containing 191	protein-coding	0.005000	0.452736	
mm_19936.1	chr2	116065691	116065891	-	1	NA	NA	NA	-733	NM_010825	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.120000	0.716418	
mm_103781.1	chr11	82764192	82764392	-	1	NA	NA	NA	29	NM_009839	12467	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0.075000	0.597015	
mm_106746.1	chr12	3913304	3913504	+	1	NA	NA	NA	21660	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.020000	0.338308	
mm_86128.1	chr9	116175346	116175546	-	1	NA	NA	NA	-83	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.055000	0.641791	
mm_89611.1	chr10	96028333	96028533	+	1	NA	NA	NA	87770	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.005000	0.373134	
mm_137964.1	chr17	33432187	33432387	+	1	NA	NA	NA	-612	NM_183282	69481	Mm.154333	NM_183282	ENSMUSG00000092519	Actl9	1700029I08Rik|AV259599	actin-like 9	protein-coding	0.010000	0.462687	
mm_72018.1	chr8	70723952	70724152	+	1	NA	NA	NA	-12	NM_001310465	110385	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	0.015000	0.616915	
mm_35348.1	chr4	32250637	32250837	-	1	NA	NA	NA	-166698	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.020000	0.482587	
mm_26040.1	chr3	135548485	135548685	+	1	NA	NA	NA	62974	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.020000	0.527363	
mm_144625.1	chr18	32938793	32938993	+	1	NA	NA	NA	-148	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.055000	0.597015	
mm_10666.1	chr2	20967257	20967457	+	1	NA	NA	NA	364	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.025000	0.537313	
mm_33964.1	chr4	137560631	137560831	+	1	NA	NA	NA	14449	NM_001033979	435811	Mm.359646	NM_001033979	ENSMUSG00000094035	Ldlrad2	-	low density lipoprotein receptor A domain containing 2	protein-coding	0.010000	0.407960	
mm_92340.1	chr10	75834365	75834565	-	1	NA	NA	NA	416	NM_010361	14872	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.055000	0.572139	
mm_142667.1	chr17	47728761	47728961	-	1	NA	NA	NA	2019	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.005000	0.482587	
mm_28348.1	chr3	89455195	89455395	-	1	NA	NA	NA	754	NM_001310640	68603	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0.010000	0.542289	
mm_116179.1	chr13	30833462	30833662	-	1	NA	NA	NA	84329	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.020000	0.482587	
mm_162165.1	chrX	96356897	96357097	-	1	NA	NA	NA	10922	NM_001310754	245525	Mm.166749	NM_172931	ENSMUSG00000045802	Hsf3	B230358A15Rik|HSF 3|HSTF 3	heat shock transcription factor 3	protein-coding	0.000000	0.238806	
mm_70195.1	chr7	144470642	144470842	-	1	NA	NA	NA	193	NM_007803	13043	Mm.205601	NM_007803	ENSMUSG00000031078	Cttn	1110020L01Rik|Ems1	cortactin	protein-coding	0.100000	0.711443	
mm_56804.1	chr6	116657285	116657485	-	1	NA	NA	NA	6701	NM_001166580	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.015000	0.482587	
mm_47915.1	chr5	135000660	135000860	-	1	NA	NA	NA	590	NR_026907	71304	Mm.482317	NR_026907	ENSMUSG00000054909	Wbscr25	4933433J03Rik|4933439O14Rik	Williams Beuren syndrome chromosome region 25 (human)	ncRNA	0.030000	0.606965	
mm_120505.1	chr14	66296449	66296649	+	1	NA	NA	NA	-476	NM_029979	66854	Mm.43871	NM_029979	ENSMUSG00000022043	Trim35	0710005M05Rik|A430106H13Rik|AW046487|HLS5|Mair|NC8|mKIAA1098	tripartite motif-containing 35	protein-coding	0.040000	0.467662	
mm_85154.1	chr9	96333043	96333243	-	1	NA	NA	NA	31156	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.010000	0.398010	
mm_23353.1	chr3	55112026	55112226	+	1	NA	NA	NA	18	NM_144895	229285	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0.105000	0.721393	
mm_128075.1	chr15	27663406	27663606	-	1	NA	NA	NA	18036	NM_001242424	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.005000	0.487562	
mm_161817.1	chr17	70424895	70425095	+	1	NA	NA	NA	203	NM_027712	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.010000	0.477612	-46(CTCCATTAAAAC,-,0.00),-44(CCATTAAAACAG,+,0.00)
mm_131645.1	chr16	20531500	20531700	+	1	NA	NA	NA	-3880	NM_001302970	11773	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.010000	0.452736	
mm_149203.1	chr19	9980455	9980655	+	1	NA	NA	NA	-45	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.010000	0.378109	
mm_65121.1	chr7	19414871	19415071	-	1	NA	NA	NA	3877	NM_007710	12715	Mm.2375	NM_007710	ENSMUSG00000030399	Ckm	Ckmm|M-CK|MCK	creatine kinase, muscle	protein-coding	0.040000	0.587065	
mm_57214.1	chr6	122856057	122856257	-	1	NA	NA	NA	0	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.025000	0.512438	
mm_61116.1	chr7	54835598	54835798	+	1	NA	NA	NA	453	NM_178705	233271	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	0.080000	0.646766	
mm_108722.1	chr12	87163763	87163963	+	1	NA	NA	NA	-8378	NR_136901	625237	Mm.390529	NR_136901		Gm6566	EG625237	predicted gene 6566	ncRNA	0.020000	0.517413	
mm_52472.1	chr6	114248253	114248453	+	1	NA	NA	NA	-34282	NM_178703	232333	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.015000	0.542289	
mm_3799.1	chr1	157506694	157506894	+	1	NA	NA	NA	-2	NM_033354	89867	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	0.025000	0.502488	
mm_9719.1	chr1	179803609	179803809	-	1	NA	NA	NA	306	NM_026375	226747	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.110000	0.651741	
mm_150864.1	chr19	45017957	45018157	+	1	NA	NA	NA	-78	NM_001130526	226154	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.150000	0.810945	
mm_39329.1	chr5	8659944	8660144	+	1	NA	NA	NA	-48	NM_011076	18671	Mm.207354	NM_011076	ENSMUSG00000040584	Abcb1a	Abcb4|Evi32|Mdr1a|Mdr3|P-gp|Pgp|Pgy-3|Pgy3|mdr-3	ATP-binding cassette, sub-family B (MDR/TAP), member 1A	protein-coding	0.030000	0.547264	
mm_124054.1	chr14	77874814	77875014	-	1	NA	NA	NA	3	NM_025384	66148	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	0.095000	0.606965	
mm_118310.1	chr13	113101819	113102019	-	1	NA	NA	NA	-938	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.030000	0.512438	
mm_77544.1	chr8	123158216	123158416	-	1	NA	NA	NA	-36	NM_020564	57429	Mm.6562	NM_020564	ENSMUSG00000000739	Sult5a1	Sult-x1|Sultx1	sulfotransferase family 5A, member 1	protein-coding	0.035000	0.621891	
mm_24961.1	chr3	96696983	96697183	+	1	NA	NA	NA	7	NM_018812	229615	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	0.125000	0.776119	
mm_46432.1	chr5	104460167	104460367	-	1	NA	NA	NA	810	NM_008861	18764	Mm.6442	NM_008861	ENSMUSG00000034462	Pkd2	C030034P18Rik|PC2|TRPP2	polycystic kidney disease 2	protein-coding	0.075000	0.676617	
mm_110503.1	chr12	54459375	54459575	-	1	NA	NA	NA	-68157	NR_033689	665239	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.005000	0.462687	-33(ACTTATAAAGAG,+,0.00)
mm_109302.1	chr12	109560497	109560697	+	1	NA	NA	NA	-3095	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.015000	0.452736	
mm_119689.1	chr14	53544800	53545000	+	1	NA	NA	NA	709029	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.572139	
mm_30854.1	chr4	28812717	28812917	+	1	NA	NA	NA	-314	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.070000	0.542289	
mm_88195.1	chr10	70096863	70097063	+	1	NA	NA	NA	-158	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.115000	0.761194	
mm_148184.1	chr18	78206314	78206514	-	1	NA	NA	NA	26	NM_001110274	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.015000	0.507463	
mm_485.1	chr1	36761772	36761972	+	1	NA	NA	NA	74	NM_009539	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.030000	0.552239	
mm_89927.1	chr10	111232309	111232509	+	1	NA	NA	NA	-66270	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.035000	0.507463	
mm_70365.1	chr8	8683797	8683997	+	1	NA	NA	NA	6265	NR_106114	102465762		NR_106114	ENSMUSG00000098917	Mir7654	Gm27748|mmu-mir-7654	microRNA 7654	ncRNA	0.030000	0.412935	
mm_3725.1	chr1	154256883	154257083	+	1	NA	NA	NA	-77	NR_040629	78112	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	0.030000	0.472637	
mm_151685.1	chr19	4283014	4283214	-	1	NA	NA	NA	23	NM_026720	68423	Mm.23642	NM_026720	ENSMUSG00000005986	Ankrd13d	0710001P18Rik|AI430801	ankyrin repeat domain 13 family, member D	protein-coding	0.105000	0.736318	
mm_54572.1	chr6	38096839	38097039	-	1	NA	NA	NA	-12414	NM_029921	77522	Mm.387207	NM_029921	ENSMUSG00000029829	Tmem213	D630002J15Rik	transmembrane protein 213	protein-coding	0.005000	0.601990	
mm_2439.1	chr1	98060208	98060408	+	1	NA	NA	NA	-12515	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA	0.015000	0.477612	
mm_111357.1	chr12	86990412	86990612	-	1	NA	NA	NA	-1836	NM_001080943	238331	Mm.185890	NM_001080943	ENSMUSG00000048483	Zdhhc22	Gm262	zinc finger, DHHC-type containing 22	protein-coding	0.070000	0.711443	
mm_119893.1	chr14	54937724	54937924	+	1	NA	NA	NA	1327	NM_029390	67272	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	0.010000	0.537313	
mm_138359.1	chr17	34982025	34982225	+	1	NA	NA	NA	-5	NM_001204273	27756	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.140000	0.726368	
mm_63835.1	chr7	135537722	135537922	+	1	NA	NA	NA	-2	NM_011212	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.095000	0.746269	
mm_21780.1	chr2	164847911	164848111	-	1	NA	NA	NA	9697	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.000000	0.532338	
mm_37841.1	chr4	132075324	132075524	-	1	NA	NA	NA	-111	NM_001128607	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.065000	0.676617	
mm_44230.1	chr5	5215766	5215966	-	1	NA	NA	NA	50202	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.030000	0.407960	
mm_111907.1	chr12	108765893	108766093	-	1	NA	NA	NA	-27318	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.020000	0.552239	-32(GCTTTAAGAGAA,+,0.00)
mm_73208.1	chr8	95713256	95713456	+	1	NA	NA	NA	-2557	NM_001035123	66083	Mm.261321	NM_001035123	ENSMUSG00000031671	Setd6	0610039J04Rik|3110004G14Rik|AI413388|C76402	SET domain containing 6	protein-coding	0.020000	0.587065	
mm_92846.1	chr10	81509184	81509384	-	1	NA	NA	NA	-9147	NM_010102	13611	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0.030000	0.532338	
mm_129915.1	chr15	84184985	84185185	-	1	NA	NA	NA	-7148	NM_178614	68653	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0.025000	0.567164	
mm_138805.1	chr17	39106875	39107075	+	1	NA	NA	NA	-29938	NM_001177582	100126779	Mm.471589	NM_001177582	ENSMUSG00000096697	Esp23	Gm20581	exocrine gland secreted peptide 23	protein-coding	0.045000	0.497512	-34(GCCTATAAAAGG,-,0.00)
mm_139924.1	chr17	71019239	71019439	+	1	NA	NA	NA	-218	NM_010867	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.020000	0.462687	
mm_60706.1	chr7	45220372	45220572	+	1	NA	NA	NA	4719	NM_001285498	21677	Mm.3019	NM_011565	ENSMUSG00000030796	Tead2	ETF|Etdf|TEAD-2|TEF-4|TEF4	TEA domain family member 2	protein-coding	0.015000	0.557214	
mm_142129.1	chr17	35901344	35901544	-	1	NA	NA	NA	-4066	NM_001033630	69662	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	0.045000	0.636816	
mm_14910.1	chr2	150570355	150570555	+	1	NA	NA	NA	40	NM_009977	13011	Mm.12965	NM_009977	ENSMUSG00000068129	Cst7	Cmap	cystatin F (leukocystatin)	protein-coding	0.015000	0.557214	
mm_157707.1	chrX	64275834	64276034	-	1	NA	NA	NA	1062	NM_178740	245446	Mm.101707	NM_178740	ENSMUSG00000046699	Slitrk4	6430513G13|D930039I09Rik	SLIT and NTRK-like family, member 4	protein-coding	0.095000	0.686567	
mm_119377.1	chr14	41132200	41132400	+	1	NA	NA	NA	512	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.005000	0.492537	
mm_57893.1	chr6	131368455	131368655	-	1	NA	NA	NA	19895	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.035000	0.572139	
mm_83253.1	chr9	42401509	42401709	-	1	NA	NA	NA	-1680	NM_001324548	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.020000	0.552239	
mm_82410.1	chr9	14780272	14780472	-	1	NA	NA	NA	2592	NM_019683	56503	Mm.395005	NM_019683	ENSMUSG00000031931	Ankrd49	AW060934|C86108|Gbif	ankyrin repeat domain 49	protein-coding	0.005000	0.417910	
mm_72833.1	chr8	88272483	88272683	+	1	NA	NA	NA	180	NM_007406	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.120000	0.756219	
mm_146800.1	chr18	20703182	20703382	-	1	NA	NA	NA	38032	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.005000	0.462687	
mm_33015.1	chr4	120951729	120951929	+	1	NA	NA	NA	-128	NM_001005788	381549	Mm.331840	NM_001005788	ENSMUSG00000064141	Zfp69	Gm1029|Krab2|Zfp63	zinc finger protein 69	protein-coding	0.110000	0.751244	
mm_159694.1	chr5	24413532	24413732	+	1	NA	NA	NA	181	NM_001310474	171209	Mm.299636	NM_183000	ENSMUSG00000038276	Asic3	AW742291|Accn3|DRASIC|SLNAC1|TNAC1	acid-sensing (proton-gated) ion channel 3	protein-coding	0.015000	0.532338	
mm_141707.1	chr17	33999884	34000084	-	1	NA	NA	NA	349	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.145000	0.731343	
mm_31933.1	chr4	86558339	86558539	+	1	NA	NA	NA	-5	NR_131920	74888		NR_131920	ENSMUSG00000085108	Saxo1os	4930457A20Rik|Fam154aos	stabilizer of axonemal microtubules 1, opposite strand	ncRNA	0.010000	0.517413	
mm_14978.1	chr2	152108971	152109171	+	1	NA	NA	NA	3547	NM_029688	76650	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.030000	0.597015	
mm_155814.1	chrX	100494250	100494450	+	1	NA	NA	NA	59	NM_008784	18518	Mm.7454	NM_008784	ENSMUSG00000031221	Igbp1	AI115586|AI662457|AW208785|C81413|Pc52|Tap42|p52	immunoglobulin (CD79A) binding protein 1	protein-coding	0.055000	0.492537	
mm_5666.1	chr1	42694881	42695081	-	1	NA	NA	NA	-156	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.095000	0.651741	
mm_166148.1	chr5	5420194	5420394	-	1	NA	NA	NA	-40043	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.025000	0.552239	
mm_2297.1	chr1	91494565	91494765	+	1	NA	NA	NA	-3	NM_028718	74019	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	0.180000	0.800995	
mm_41369.1	chr5	90524726	90524926	+	1	NA	NA	NA	5877	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.020000	0.482587	-65(CCCCTTAAAAAC,-,0.00),-63(CCTTAAAAACAA,+,0.00)
mm_93599.1	chr10	117190170	117190370	-	1	NA	NA	NA	34237	NM_026570	64050	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0.025000	0.477612	-97(CCTTTTATAGTG,+,0.00)
mm_94591.1	chr11	11769084	11769284	+	1	NA	NA	NA	39778	NM_021891	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.055000	0.592040	
mm_56086.1	chr6	87335603	87335803	-	1	NA	NA	NA	72	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.050000	0.572139	
mm_125086.1	chr15	27466503	27466703	+	1	NA	NA	NA	-74	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.180000	0.761194	
mm_146689.1	chr18	12862762	12862962	-	1	NA	NA	NA	-149	NM_001252491	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.015000	0.547264	
mm_14173.1	chr2	126707265	126707465	+	1	NA	NA	NA	37	NM_019729	84092	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	0.115000	0.646766	
mm_45015.1	chr5	38527587	38527787	-	1	NA	NA	NA	-25535	NM_145559	117591	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.030000	0.507463	
mm_993.1	chr1	58711975	58712175	+	1	NA	NA	NA	584	NM_001293804	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.015000	0.452736	
mm_157714.1	chrX	67921334	67921534	-	1	NA	NA	NA	16	NM_025763	66780	Mm.79193	NM_025763	ENSMUSG00000025288	4933436I01Rik	-	RIKEN cDNA 4933436I01 gene	protein-coding	0.000000	0.442786	-33(GGGTATATAAGA,-,0.00)
mm_111323.1	chr12	86469884	86470084	-	1	NA	NA	NA	48340	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.035000	0.502488	
mm_35639.1	chr4	43518366	43518566	-	1	NA	NA	NA	5088	NM_009416	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.030000	0.512438	-9(GTCTCTTAAAGT,-,0.00)
mm_32843.1	chr4	117849222	117849422	+	1	NA	NA	NA	14064	NM_008135	14664	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	0.045000	0.631841	
mm_167106.1	chr7	112680960	112681160	-	1	NA	NA	NA	1740	NM_009346	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.030000	0.567164	
mm_120868.1	chr14	75229938	75230138	+	1	NA	NA	NA	-12249	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.005000	0.477612	
mm_169841.1	chr16	3113394	3113594	-	1	NA	NA	NA	-478904	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.010000	0.407960	
mm_127268.1	chr15	99719052	99719252	+	1	NA	NA	NA	1559	NM_010271	14555	Mm.252391	NM_010271	ENSMUSG00000023019	Gpd1	AI747587|Gdc-1|Gdc1|mKIAA4010	glycerol-3-phosphate dehydrogenase 1 (soluble)	protein-coding	0.015000	0.562189	
mm_64521.1	chr7	143841147	143841347	+	1	NA	NA	NA	18080	NM_007856	13360	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	0.020000	0.517413	
mm_611.1	chr1	40009724	40009924	+	1	NA	NA	NA	-74944	NM_010555	16178	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.025000	0.572139	
mm_139281.1	chr17	48247750	48247950	+	1	NA	NA	NA	121	NM_021407	58218	Mm.302438	NM_021407	ENSMUSG00000041754	Trem3	BB134760	triggering receptor expressed on myeloid cells 3	protein-coding	0.010000	0.572139	
mm_28401.1	chr3	90238735	90238935	-	1	NA	NA	NA	3715	NM_001307935	78284	Mm.299952	NM_030080	ENSMUSG00000027938	Creb3l4	1700012K17Rik|5330432F22Rik|AIBZIP|AV040530|AV258827|CREB4|JAL|TISP40|acre1	cAMP responsive element binding protein 3-like 4	protein-coding	0.000000	0.557214	
mm_43264.1	chr5	130369168	130369368	+	1	NA	NA	NA	-190	NM_181045	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.000000	0.517413	-35(GACCCTATAAGA,-,0.00),-33(CCCTATAAGAGC,-,0.00)
mm_5517.1	chr1	37665605	37665805	-	1	NA	NA	NA	54106	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.020000	0.611940	
mm_16354.1	chr2	174426193	174426393	+	1	NA	NA	NA	10489	NM_020580	57314	Mm.271709	NM_020580	ENSMUSG00000016253	Nelfcd	2410003I03Rik|C77797|Th1|Th1l	negative elongation factor complex member C/D, Th1l	protein-coding	0.010000	0.547264	
mm_46452.1	chr5	105116752	105116952	-	1	NA	NA	NA	-6560	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.005000	0.482587	
mm_171284.1	chr3	89957294	89957494	-	1	NA	NA	NA	5938	NM_001081182	54667	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	0.025000	0.577114	
mm_48754.1	chr5	148184275	148184475	-	1	NA	NA	NA	208440	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.010000	0.487562	
mm_158756.1	chrX	166469745	166469945	-	1	NA	NA	NA	10022	NM_019773	56382	Mm.25306	NM_019773	ENSMUSG00000079316	Rab9	2410064E05Rik|AI195561|Rab9a|Sid6061p	RAB9, member RAS oncogene family	protein-coding	0.005000	0.363184	
mm_151348.1	chr19	55896318	55896518	+	1	NA	NA	NA	1097	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.005000	0.383085	
mm_120401.1	chr14	64950010	64950210	+	1	NA	NA	NA	65	NM_001253731	210925	Mm.71332	NM_153414	ENSMUSG00000021975	Ints9	BC028953|D14Ertd231e	integrator complex subunit 9	protein-coding	0.040000	0.512438	
mm_107813.1	chr12	65182467	65182667	+	1	NA	NA	NA	-9987	NM_172578	217653	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	0.000000	0.412935	
mm_39669.1	chr5	25247297	25247497	+	1	NA	NA	NA	24504	NM_144908	231050	Mm.21814	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.005000	0.373134	
mm_74887.1	chr8	25102087	25102287	-	1	NA	NA	NA	-376	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.060000	0.587065	
mm_66479.1	chr7	45013423	45013623	-	1	NA	NA	NA	-1036	NR_106021	102466218		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0.020000	0.527363	
mm_172141.1	chr6	36809925	36810125	-	1	NA	NA	NA	1336	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.040000	0.592040	
mm_82199.1	chr9	124073450	124073650	+	1	NA	NA	NA	-28633	NM_009915	12772	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.000000	0.437811	-39(GAGTATAAATAG,-,0.00)
mm_36657.1	chr4	94928734	94928934	-	1	NA	NA	NA	9	NM_027089	67753	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	0.000000	0.417910	
mm_103555.1	chr11	77719416	77719616	-	1	NA	NA	NA	5777	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.010000	0.338308	
mm_78253.1	chr9	21743906	21744106	+	1	NA	NA	NA	16280	NM_026282	67629	Mm.295642	NM_026282	ENSMUSG00000074476	Spc24	2410030K01Rik|AV109292|Spbc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	0.025000	0.482587	
mm_62438.1	chr7	101373178	101373378	+	1	NA	NA	NA	-4844	NM_001040112	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.070000	0.686567	
mm_21981.1	chr2	167483233	167483433	-	1	NA	NA	NA	-9312	NM_030743	81018	Mm.22225	NM_030743	ENSMUSG00000006418	Rnf114	1110008J21Rik|AI225886|AW549494|Zfp228|Zfp313|Znf228	ring finger protein 114	protein-coding	0.035000	0.572139	
mm_131310.1	chr16	11500609	11500809	+	1	NA	NA	NA	95061	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.005000	0.412935	
mm_19913.1	chr2	114654856	114655056	-	1	NA	NA	NA	-28	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	0.095000	0.656716	
mm_62597.1	chr7	105650723	105650923	+	1	NA	NA	NA	10283	NM_019502	14356	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0.025000	0.597015	
mm_89621.1	chr10	96181709	96181909	+	1	NA	NA	NA	-44398	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.010000	0.497512	
mm_30142.1	chr3	142384909	142385109	-	1	NA	NA	NA	6841	NM_022554	56376	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0.000000	0.363184	14(CCTTTAATGTTC,+,0.00)
mm_19621.1	chr2	102812588	102812788	-	1	NA	NA	NA	88977	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.000000	0.388060	
mm_16109.1	chr2	169633423	169633623	+	1	NA	NA	NA	-123	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.030000	0.492537	
mm_59825.1	chr7	29289182	29289382	+	1	NA	NA	NA	-38	NM_026731	68458	Mm.2343	NM_026731	ENSMUSG00000037166	Ppp1r14a	1110001M11Rik|Cpi17	protein phosphatase 1, regulatory (inhibitor) subunit 14A	protein-coding	0.100000	0.716418	
mm_84435.1	chr9	66069658	66069858	-	1	NA	NA	NA	-27	NM_001025612	382083	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	0.065000	0.681592	
mm_80058.1	chr9	69397813	69398013	+	1	NA	NA	NA	-85	NM_145618	93697	Mm.35911	NM_145618	ENSMUSG00000032235	Ice2	B230343B06Rik|Narg2	interactor of little elongation complex ELL subunit 2	protein-coding	0.105000	0.636816	37(GCTTTTAAATGA,+,0.00)
mm_165887.1	chr4	43522776	43522976	-	1	NA	NA	NA	678	NM_009416	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.045000	0.606965	
mm_171067.1	chr3	113565548	113565748	+	1	NA	NA	NA	9114	NM_007446	11722	Mm.439727	NM_007446	ENSMUSG00000074264	Amy1	Amy-1|Amy1a|C030014B17Rik	amylase 1, salivary	protein-coding	0.025000	0.542289	-31(CCCTTTATAAGC,+,0.00),-31(CCCTTTATAAGC,-,0.00),-29(CTTTATAAGCAC,+,0.00)
mm_74558.1	chr8	10947713	10947913	-	1	NA	NA	NA	-19356	NR_135302	665306	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0.005000	0.462687	
mm_94137.1	chr10	128704861	128705061	-	1	NA	NA	NA	90	NM_183417	12566	Mm.111326	NM_016756	ENSMUSG00000025358	Cdk2	A630093N05Rik	cyclin-dependent kinase 2	protein-coding	0.080000	0.671642	
mm_106871.1	chr12	8010379	8010579	+	1	NA	NA	NA	32802	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.020000	0.432836	
mm_149337.1	chr19	10850200	10850400	+	1	NA	NA	NA	7756	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.010000	0.482587	
mm_1278.1	chr1	63445988	63446188	+	1	NA	NA	NA	197	NM_011780	23792	Mm.124892	NM_011780	ENSMUSG00000025964	Adam23	AW046396|MDC3	a disintegrin and metallopeptidase domain 23	protein-coding	0.140000	0.776119	
mm_164671.1	chr17	45569188	45569388	-	1	NA	NA	NA	3973	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.030000	0.497512	
mm_64030.1	chr7	140769110	140769310	+	1	NA	NA	NA	5378	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.025000	0.537313	
mm_125407.1	chr15	41710558	41710758	+	1	NA	NA	NA	-78376	NM_001130165	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.020000	0.482587	
mm_49137.1	chr6	8949578	8949778	+	1	NA	NA	NA	-341	NM_008751	18231	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.040000	0.582090	
mm_150262.1	chr19	34206294	34206494	+	1	NA	NA	NA	14124	NM_029682	76630	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.015000	0.388060	
mm_26363.1	chr3	142559985	142560185	+	1	NA	NA	NA	33	NM_001289492	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.015000	0.477612	
mm_1038.1	chr1	58758291	58758491	+	1	NA	NA	NA	27839	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.025000	0.437811	
mm_56686.1	chr6	113910482	113910682	-	1	NA	NA	NA	-19043	NM_001036684	11941	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.005000	0.587065	
mm_17967.1	chr2	37577480	37577680	-	1	NA	NA	NA	60954	NM_177383	338346	Mm.445325	NM_177383	ENSMUSG00000053164	Gpr21	C230004C13Rik	G protein-coupled receptor 21	protein-coding	0.000000	0.358209	
mm_44700.1	chr5	30545744	30545944	-	1	NA	NA	NA	-8	NM_028483	73259	Mm.443299	NM_028483	ENSMUSG00000053194	Cib4	1700041E20Rik	calcium and integrin binding family member 4	protein-coding	0.000000	0.532338	
mm_132121.1	chr16	31713354	31713554	+	1	NA	NA	NA	-40896	NM_001252436	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.000000	0.442786	
mm_63937.1	chr7	139719258	139719458	+	1	NA	NA	NA	-35543	NM_001302546	212124	Mm.425507	NM_177212	ENSMUSG00000049571	Cfap46	9330101J02Rik|E030019B06Rik|Gm170|Ttc40	cilia and flagella associated protein 46	protein-coding	0.020000	0.378109	
mm_115032.1	chr13	99247755	99247955	+	1	NA	NA	NA	63032	NM_001004149	238803	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.005000	0.477612	
mm_80007.1	chr9	67840245	67840445	+	1	NA	NA	NA	-51	NM_177184	320528	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.140000	0.796020	
mm_95600.1	chr11	53350896	53351096	+	1	NA	NA	NA	229	NM_033565	93736	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.165000	0.810945	
mm_152395.1	chr19	10525108	10525308	-	1	NA	NA	NA	1	NM_025333	66072	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	0.125000	0.701493	
mm_45162.1	chr5	50023910	50024110	-	1	NA	NA	NA	34986	NM_133911	70693	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding	0.000000	0.298507	
mm_3196.1	chr1	135818498	135818698	+	1	NA	NA	NA	0	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding	0.080000	0.676617	
mm_23440.1	chr3	59431914	59432114	+	1	NA	NA	NA	-87758	NM_001162884	242050	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.025000	0.432836	
mm_10131.1	chr2	3810103	3810303	+	1	NA	NA	NA	96745	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.025000	0.467662	-26(TTACATAAAAGG,-,0.00)
mm_24245.1	chr3	89136519	89136719	+	1	NA	NA	NA	-4	NM_001099779	18770	Mm.383180	NM_013631	ENSMUSG00000041237	Pklr	Pk-1|Pk1|R-PK	pyruvate kinase liver and red blood cell	protein-coding	0.025000	0.562189	
mm_82795.1	chr9	29412164	29412364	-	1	NA	NA	NA	550865	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.065000	0.562189	
mm_57406.1	chr6	124865447	124865647	-	1	NA	NA	NA	-1630	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.020000	0.437811	
mm_18285.1	chr2	52558455	52558655	-	1	NA	NA	NA	56	NM_146123	12298	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.020000	0.502488	-4(CTTTTTATGCTC,+,0.00)
mm_44621.1	chr5	25665651	25665851	-	1	NA	NA	NA	40046	NM_020570	57434	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	0.025000	0.457711	
mm_103257.1	chr11	71004344	71004544	-	1	NA	NA	NA	-12	NM_178367	216877	Mm.35399	NM_178367	ENSMUSG00000040620	Dhx33	3110057P17Rik|9430096J02Rik|Ddx33	DEAH (Asp-Glu-Ala-His) box polypeptide 33	protein-coding	0.100000	0.686567	
mm_50896.1	chr6	57366027	57366227	+	1	NA	NA	NA	-4749	NM_134171	171189	Mm.377169	NM_134171	ENSMUSG00000093411	Vmn1r17	V1rc16	vomeronasal 1 receptor 17	protein-coding	0.005000	0.388060	
mm_58790.1	chr7	16130177	16130377	+	1	NA	NA	NA	451	NM_148946	110891	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	0.050000	0.696517	
mm_32281.1	chr4	102978602	102978802	+	1	NA	NA	NA	-7677	NM_001163767	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.050000	0.651741	
mm_148227.1	chr18	80353665	80353865	-	1	NA	NA	NA	10489	NM_001190373	240444	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.005000	0.427861	
mm_77747.1	chr8	127440177	127440377	-	1	NA	NA	NA	140625	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.025000	0.542289	
mm_147224.1	chr18	38203713	38203913	-	1	NA	NA	NA	5949	NM_029357	75599	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.035000	0.601990	
mm_122295.1	chr14	34588532	34588732	-	1	NA	NA	NA	-25	NM_001039074	24131	Mm.29733	NM_011918	ENSMUSG00000021798	Ldb3	AW742271|PDLIM6|ZASP	LIM domain binding 3	protein-coding	0.015000	0.587065	-86(GTCCATTTATGG,-,0.00),-84(CCATTTATGGGC,+,0.00)
mm_1731.1	chr1	75383487	75383687	+	1	NA	NA	NA	1473	NM_001085371	11790	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0.000000	0.363184	
mm_40398.1	chr5	52834041	52834241	+	1	NA	NA	NA	6	NM_024213	52206	Mm.272568	NM_024213	ENSMUSG00000029176	Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding	0.110000	0.691542	
mm_72486.1	chr8	83666612	83666812	+	1	NA	NA	NA	72	NM_013641	19216	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	42kDa|EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	0.030000	0.641791	
mm_56972.1	chr6	120227082	120227282	-	1	NA	NA	NA	33359	NM_001347432	29862	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.010000	0.522388	
mm_88430.1	chr10	77457919	77458119	+	1	NA	NA	NA	39643	NR_027377	100045653	Mm.363175	NR_027377		Gm17769	-	predicted gene, 17769	ncRNA	0.005000	0.557214	
mm_74692.1	chr8	15018799	15018999	-	1	NA	NA	NA	7874	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.030000	0.447761	
mm_77188.1	chr8	111863939	111864139	-	1	NA	NA	NA	-9729	NM_011801	23837	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	0.005000	0.412935	
mm_141247.1	chr17	27513296	27513496	-	1	NA	NA	NA	-9863	NM_001291045	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.140000	0.766169	-35(CTCTTTAAAAGG,-,0.00),-34(TCTTTAAAAGGC,+,0.00),-33(CTTTAAAAGGCC,+,0.00)
mm_122233.1	chr14	33185081	33185281	-	1	NA	NA	NA	-115	NM_001146022	545030	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.020000	0.532338	
mm_33044.1	chr4	122971392	122971592	+	1	NA	NA	NA	-10304	NM_029662	76574	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.005000	0.522388	-35(GGTTATATATGG,-,0.00)
mm_149899.1	chr19	25505699	25505899	+	1	NA	NA	NA	93	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.075000	0.587065	
mm_138806.1	chr17	39406318	39406518	+	1	NA	NA	NA	59	NM_001244763	100126774	Mm.350534	NM_001244763	ENSMUSG00000094024	Esp18	Gm20579	exocrine gland secreted peptide 18	protein-coding	0.010000	0.402985	
mm_53944.1	chr6	5188658	5188858	-	1	NA	NA	NA	5188	NM_011134	18979	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.025000	0.442786	
mm_77704.1	chr8	126591406	126591606	-	1	NA	NA	NA	1930	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.030000	0.631841	
mm_3461.1	chr1	150103960	150104160	+	1	NA	NA	NA	4029	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.497512	
mm_133511.1	chr16	90738349	90738549	+	1	NA	NA	NA	125	NM_029844	77037	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.030000	0.582090	
mm_137011.1	chr17	17830958	17831158	+	1	NA	NA	NA	83	NM_001162909	75202	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0.015000	0.502488	
mm_128374.1	chr15	42676406	42676606	-	1	NA	NA	NA	471	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.025000	0.437811	
mm_36712.1	chr4	97777957	97778157	-	1	NA	NA	NA	431	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.095000	0.641791	
mm_116247.1	chr13	33935747	33935947	-	1	NA	NA	NA	-185	NR_040707	68808	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0.080000	0.671642	
mm_11187.1	chr2	29099784	29099984	+	1	NA	NA	NA	-25108	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.040000	0.527363	
mm_139446.1	chr17	55445617	55445817	+	1	NA	NA	NA	0	NM_172829	240119	Mm.311687	NM_172829	ENSMUSG00000024172	St6gal2	C230064G14Rik|St6galII|mKIAA1877	beta galactoside alpha 2,6 sialyltransferase 2	protein-coding	0.115000	0.701493	-72(GCCTTTTTAGGC,-,0.00)
mm_32050.1	chr4	97581837	97582037	+	1	NA	NA	NA	-6	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.025000	0.462687	
mm_123663.1	chr14	69244366	69244566	-	1	NA	NA	NA	40637	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.005000	0.353234	
mm_164722.1	chr17	57031341	57031541	-	1	NA	NA	NA	66	NM_010613	16549	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0.140000	0.756219	
mm_140513.1	chr17	5803249	5803449	-	1	NA	NA	NA	3859	NR_045080	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.005000	0.497512	
mm_12855.1	chr2	83724064	83724264	+	1	NA	NA	NA	-233	NM_008402	16410	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.045000	0.532338	
mm_23699.1	chr3	68694000	68694200	+	1	NA	NA	NA	2676	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.010000	0.492537	
mm_57252.1	chr6	123283436	123283636	-	1	NA	NA	NA	6335	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.393035	
mm_142825.1	chr17	51761703	51761903	-	1	NA	NA	NA	50251	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.000000	0.298507	
mm_31659.1	chr4	59905029	59905229	+	1	NA	NA	NA	9927	NM_021053	30936	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0.005000	0.363184	
mm_45165.1	chr5	50543490	50543690	-	1	NA	NA	NA	290828	NR_106197	102465903		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA	0.000000	0.412935	
mm_77620.1	chr8	123949144	123949344	-	1	NA	NA	NA	21	NM_172288	234865	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	0.110000	0.636816	
mm_156989.1	chrX	7412681	7412881	-	1	NA	NA	NA	8266	NR_027925	68355	Mm.45111	NR_027924		2010204K13Rik	0610010M13Rik|Cip7	RIKEN cDNA 2010204K13 gene	ncRNA	0.015000	0.507463	
mm_138084.1	chr17	33996306	33996506	+	1	NA	NA	NA	3927	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.005000	0.512438	
mm_66001.1	chr7	30559735	30559935	-	1	NA	NA	NA	-189	NM_001290569	75660	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	0.050000	0.572139	
mm_121696.1	chr14	13961773	13961973	-	1	NA	NA	NA	-560	NM_025435	66231	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.015000	0.482587	-12(CCCTTTAAGAAG,-,0.00),-11(CCTTTAAGAAGC,+,0.00)
mm_18954.1	chr2	76787089	76787289	-	1	NA	NA	NA	111874	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.020000	0.432836	
mm_11518.1	chr2	32606918	32607118	+	1	NA	NA	NA	33	NR_110347	50935	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.145000	0.810945	
mm_137767.1	chr17	29490660	29490860	+	1	NA	NA	NA	-285	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.150000	0.810945	
mm_34962.1	chr4	156008491	156008691	+	1	NA	NA	NA	-5104	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.010000	0.467662	
mm_158850.1	chrX	169986034	169986234	-	1	NA	NA	NA	-7217	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.030000	0.582090	
mm_58957.1	chr7	18844347	18844547	+	1	NA	NA	NA	4481	NM_153760	243864	Mm.233503	NM_153760	ENSMUSG00000040987	Mill2	Micb	MHC I like leukocyte 2	protein-coding	0.000000	0.482587	-1(CCCTTTCTGGCC,+,0.00)
mm_88254.1	chr10	73201872	73202072	+	1	NA	NA	NA	-115267	NR_040646	327768	Mm.417745	NR_040646		A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0.020000	0.487562	
mm_160180.1	chr7	45866681	45866881	-	1	NA	NA	NA	-100	NM_008172	14814	Mm.322594	NM_008172	ENSMUSG00000002771	Grin2d	GluN2D|NMDAR2D|NR2D	glutamate receptor, ionotropic, NMDA2D (epsilon 4)	protein-coding	0.040000	0.552239	
mm_126278.1	chr15	79209153	79209353	+	1	NA	NA	NA	-19920	NM_008837	18693	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	0.055000	0.661692	
mm_152159.1	chr19	7267340	7267540	-	1	NA	NA	NA	46	NM_054048	104383	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.055000	0.676617	
mm_111229.1	chr12	84760666	84760866	-	1	NA	NA	NA	12346	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.035000	0.572139	
mm_79128.1	chr9	47539369	47539569	+	1	NA	NA	NA	9117	NM_018770	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.010000	0.388060	
mm_146484.1	chr18	90510104	90510304	+	1	NA	NA	NA	50	NM_198295	67988	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.095000	0.666667	
mm_92379.1	chr10	76425353	76425553	-	1	NA	NA	NA	17459	NM_008787	18541	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	0.005000	0.368159	
mm_129568.1	chr15	79658694	79658894	-	1	NA	NA	NA	162	NM_029407	75729	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	0.070000	0.626866	
mm_48169.1	chr5	137153031	137153231	-	1	NA	NA	NA	-36924	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.020000	0.497512	
mm_60793.1	chr7	45570407	45570607	+	1	NA	NA	NA	354	NM_009737	12036	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.095000	0.706468	
mm_59248.1	chr7	24818659	24818859	+	1	NA	NA	NA	-36	NR_045096	545936	Mm.376228	NR_045096	ENSMUSG00000011350	Gm5893	EG545936|Gm477	predicted gene 5893	pseudo	0.015000	0.577114	
mm_115236.1	chr13	109903337	109903537	+	1	NA	NA	NA	-372	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.080000	0.691542	
mm_46643.1	chr5	108549868	108550068	-	1	NA	NA	NA	59	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.125000	0.736318	
mm_40343.1	chr5	45493390	45493590	+	1	NA	NA	NA	116	NM_024434	66988	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0.130000	0.716418	
mm_109189.1	chr12	108554580	108554780	+	1	NA	NA	NA	-40	NM_001163394	14026	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.120000	0.741294	-3(CCCTCTTAGAGG,-,0.00),-2(CCTCTTAGAGGC,+,0.00)
mm_136245.1	chr16	90934775	90934975	-	1	NA	NA	NA	-26	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.105000	0.651741	
mm_63286.1	chr7	126780194	126780394	+	1	NA	NA	NA	-1189	NM_011538	21389	Mm.727	NM_011538	ENSMUSG00000030699	Tbx6	rv	T-box 6	protein-coding	0.005000	0.567164	
mm_90461.1	chr10	127759640	127759840	+	1	NA	NA	NA	-23	NM_080436	107605	Mm.484271	NM_080436	ENSMUSG00000089789	Rdh1	-	retinol dehydrogenase 1 (all trans)	protein-coding	0.000000	0.437811	
mm_47354.1	chr5	122763906	122764106	-	1	NA	NA	NA	15404	NM_001199676	207565	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.065000	0.671642	
mm_158182.1	chrX	103981165	103981365	-	1	NA	NA	NA	19	NM_011276	19820	Mm.427762	NM_011276	ENSMUSG00000056537	Rlim	AL022832|AW743871|Ha1r|Rlim1|Rnf12	ring finger protein, LIM domain interacting	protein-coding	0.045000	0.587065	
mm_115517.1	chr13	5845632	5845832	-	1	NA	NA	NA	12360	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.005000	0.407960	
mm_132374.1	chr16	34887513	34887713	+	1	NA	NA	NA	51716	NR_040536	76649	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.000000	0.323383	
mm_73161.1	chr8	95002330	95002530	+	1	NA	NA	NA	-15262	NM_173036	54672	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.025000	0.572139	
mm_88959.1	chr10	81393549	81393749	+	1	NA	NA	NA	585	NM_001099917	72273	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.040000	0.592040	
mm_72243.1	chr8	75033552	75033752	+	1	NA	NA	NA	-34	NM_001136259	21968	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.100000	0.761194	
mm_153207.1	chr19	34662314	34662514	-	1	NA	NA	NA	21525	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.040000	0.512438	
mm_46149.1	chr5	93306329	93306529	-	1	NA	NA	NA	38856	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0.010000	0.497512	
mm_112556.1	chr13	12565833	12566033	+	1	NA	NA	NA	50	NM_026184	67475	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	0.110000	0.706468	
mm_37676.1	chr4	129121980	129122180	-	1	NA	NA	NA	-155	NM_001286081	15444	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	0.025000	0.587065	77(GCCTCTAAGAGC,-,0.00)
mm_9700.1	chr1	178590266	178590466	-	1	NA	NA	NA	61241	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.020000	0.542289	
mm_27406.1	chr3	51340429	51340629	-	1	NA	NA	NA	115	NM_001291059	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.145000	0.771144	
mm_73535.1	chr8	108703534	108703734	+	1	NA	NA	NA	-11010	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.015000	0.422886	
mm_12566.1	chr2	72979052	72979252	+	1	NA	NA	NA	129	NM_001098425	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.145000	0.781095	
mm_100671.1	chr11	3355274	3355474	-	1	NA	NA	NA	767	NM_001034030	16886	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.030000	0.572139	
mm_78168.1	chr9	21031970	21032170	+	1	NA	NA	NA	32	NM_008319	15898	Mm.4629	NM_008319	ENSMUSG00000032174	Icam5	CD50|ICAM-3|Icam3|TLN|Tlcn	intercellular adhesion molecule 5, telencephalin	protein-coding	0.095000	0.676617	
mm_169034.1	chr13	13232798	13232998	-	1	NA	NA	NA	50182	NM_001311129	107849	Mm.392548	NM_181852	ENSMUSG00000055360	Prl2c5	Ghd3|MRP-4|Mrpplf4|PLF-4	prolactin family 2, subfamily c, member 5	protein-coding	0.100000	0.646766	
mm_132467.1	chr16	36693861	36694061	+	1	NA	NA	NA	-17	NM_001285788	106347	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.065000	0.676617	
mm_133066.1	chr16	58669970	58670170	+	1	NA	NA	NA	-138	NM_007757	12892	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0.040000	0.562189	
mm_50743.1	chr6	52729329	52729529	+	1	NA	NA	NA	15700	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.015000	0.462687	
mm_139442.1	chr17	54859183	54859383	+	1	NA	NA	NA	-489209	NR_045825	69418	Mm.391004	NR_045825	ENSMUSG00000099747	1700025K24Rik	-	RIKEN cDNA 1700025K24 gene	ncRNA	0.005000	0.477612	-35(GACTATAAAAAG,-,0.00),-3(CCCTCTTAATGC,-,0.00)
mm_120782.1	chr14	74641441	74641641	+	1	NA	NA	NA	701	NM_172812	15558	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	0.020000	0.407960	
mm_165188.1	chr2	29890012	29890212	+	1	NA	NA	NA	49	NM_013615	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.115000	0.736318	
mm_134270.1	chr16	13903017	13903217	-	1	NA	NA	NA	28	NM_001039533	94184	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0.120000	0.746269	
mm_9251.1	chr1	171437206	171437406	-	1	NA	NA	NA	-255	NM_172647	16456	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	0.020000	0.532338	
mm_130173.1	chr15	93336695	93336895	-	1	NA	NA	NA	140	NR_028315	67057	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0.185000	0.820896	
mm_54477.1	chr6	35064919	35065119	-	1	NA	NA	NA	68718	NM_001164412	53621	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0.010000	0.298507	
mm_87392.1	chr10	45289085	45289285	+	1	NA	NA	NA	-120	NM_024286	78977	Mm.24748	NM_024286	ENSMUSG00000019848	Popdc3	AA682104|Pop3	popeye domain containing 3	protein-coding	0.015000	0.502488	-66(CCTTTTCTGCCC,+,0.00)
mm_19469.1	chr2	92459190	92459390	-	1	NA	NA	NA	504	NM_211358	228368	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.035000	0.587065	
mm_27681.1	chr3	65958082	65958282	-	1	NA	NA	NA	43	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.170000	0.731343	
mm_168357.1	chr1	114229723	114229923	-	1	NA	NA	NA	-1455314	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.030000	0.567164	
mm_161304.1	chr14	32465694	32465894	-	1	NA	NA	NA	115	NM_009891	12647	Mm.442817	NM_009891	ENSMUSG00000021919	Chat	B230380D24Rik	choline acetyltransferase	protein-coding	0.025000	0.601990	
mm_138099.1	chr17	34048350	34048550	+	1	NA	NA	NA	9312	NM_001317722	12815	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.005000	0.587065	
mm_165628.1	chr3	65613394	65613594	+	1	NA	NA	NA	-45794	NR_106200	102465905		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	0.015000	0.457711	-35(CCCCTTAAAGAC,+,0.00),-33(CCTTAAAGACTG,+,0.00)
mm_155349.1	chrX	68678693	68678893	+	1	NA	NA	NA	252	NM_001290424	14265	Mm.3451	NM_008031	ENSMUSG00000000838	Fmr1	FMRP|Fmr-1	fragile X mental retardation syndrome 1	protein-coding	0.145000	0.746269	
mm_74743.1	chr8	18978096	18978296	-	1	NA	NA	NA	-80	NM_183039	360217	Mm.271560	NM_183039	ENSMUSG00000053678	Defb40	BD-40	defensin beta 40	protein-coding	0.015000	0.462687	
mm_107597.1	chr12	49382560	49382760	+	1	NA	NA	NA	-223	NM_001160112	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.030000	0.552239	-77(CCTTAAAGAGGA,+,0.00)
mm_48011.1	chr5	136165130	136165330	-	1	NA	NA	NA	5426	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.010000	0.398010	
mm_124107.1	chr14	79390546	79390746	-	1	NA	NA	NA	22	NM_025832	66897	Mm.24425	NM_025832	ENSMUSG00000022020	Naa16	1300019C06Rik|Narg1l	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	protein-coding	0.130000	0.746269	
mm_27959.1	chr3	79886110	79886310	-	1	NA	NA	NA	280	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.045000	0.537313	
mm_54260.1	chr6	28397881	28398081	-	1	NA	NA	NA	23743	NM_028900	74375	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	0.065000	0.592040	
mm_63788.1	chr7	132559317	132559517	+	1	NA	NA	NA	16981	NM_016978	18242	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0.005000	0.373134	
mm_57960.1	chr6	135247790	135247990	-	1	NA	NA	NA	-6	NM_001080552	14840	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	0.030000	0.532338	
mm_166345.1	chr5	117988231	117988431	+	1	NA	NA	NA	11561	NM_001346588	231670	Mm.21912	NM_145564	ENSMUSG00000032898	Fbxo21	2810425J22Rik|AU016673	F-box protein 21	protein-coding	0.005000	0.507463	
mm_63871.1	chr7	135854012	135854212	+	1	NA	NA	NA	-137733	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.020000	0.398010	
mm_46220.1	chr5	98943668	98943868	-	1	NA	NA	NA	89353	NM_001310677	110075	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0.005000	0.442786	50(CCTTTTAGGGGT,+,0.00)
mm_168626.1	chr1	180579152	180579352	+	1	NA	NA	NA	-7949	NR_105869	102466761		NR_105869	ENSMUSG00000098926	Mir6904	Gm27426|mmu-mir-6904	microRNA 6904	ncRNA	0.030000	0.562189	
mm_153567.1	chr19	42599854	42600054	-	1	NA	NA	NA	12852	NM_001164311	67573	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	0.050000	0.582090	
mm_60981.1	chr7	48978188	48978388	+	1	NA	NA	NA	19215	NM_001111016	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.000000	0.412935	
mm_111371.1	chr12	87238628	87238828	-	1	NA	NA	NA	-127	NM_027744	71275	Mm.79198	NM_027744	ENSMUSG00000072919	Noxred1	4933437F05Rik	NADP+ dependent oxidoreductase domain containing 1	protein-coding	0.005000	0.472637	
mm_133388.1	chr16	84774041	84774241	+	1	NA	NA	NA	18	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.080000	0.701493	
mm_100350.1	chr11	118428179	118428379	+	1	NA	NA	NA	-178	NM_001204129	56745	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.015000	0.532338	
mm_4754.1	chr1	182287919	182288119	+	1	NA	NA	NA	-5260	NM_007853	13244	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.010000	0.567164	
mm_147204.1	chr18	37894108	37894308	-	1	NA	NA	NA	-39548	NR_105945	102465592		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.020000	0.348259	
mm_97108.1	chr11	74649438	74649638	+	1	NA	NA	NA	43	NM_001081158	74148	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.155000	0.751244	
mm_39330.1	chr5	8659979	8660179	+	1	NA	NA	NA	-13	NM_011076	18671	Mm.207354	NM_011076	ENSMUSG00000040584	Abcb1a	Abcb4|Evi32|Mdr1a|Mdr3|P-gp|Pgp|Pgy-3|Pgy3|mdr-3	ATP-binding cassette, sub-family B (MDR/TAP), member 1A	protein-coding	0.030000	0.567164	
mm_169088.1	chr13	38204798	38204998	+	1	NA	NA	NA	-41	NM_026382	67797	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	0.090000	0.661692	
mm_133200.1	chr16	73045682	73045882	+	1	NA	NA	NA	382633	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.000000	0.253731	
mm_47757.1	chr5	131307613	131307813	-	1	NA	NA	NA	-191	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.090000	0.656716	
mm_132637.1	chr16	39984226	39984426	+	1	NA	NA	NA	1081981	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.050000	0.592040	4(GGTCCTATAAGG,-,0.00)
mm_43349.1	chr5	135168312	135168512	+	1	NA	NA	NA	40	NM_009745	12054	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	0.160000	0.776119	
mm_145268.1	chr18	52767698	52767898	+	1	NA	NA	NA	-13	NM_026408	67847	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0.035000	0.542289	
mm_145485.1	chr18	60383350	60383550	+	1	NA	NA	NA	7421	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.000000	0.318408	81(ATCTCTAAAAAG,-,0.00)
mm_43133.1	chr5	125389206	125389406	+	1	NA	NA	NA	711	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.115000	0.656716	
mm_57834.1	chr6	129465054	129465254	-	1	NA	NA	NA	7625	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.010000	0.393035	14(TCTTTTATAGCT,+,0.00)
mm_63831.1	chr7	135268480	135268680	+	1	NA	NA	NA	-39	NM_001163611	100043254	Mm.192092	NM_001163611	ENSMUSG00000073804	Nps	ENSMUSG00000073804	neuropeptide S	protein-coding	0.015000	0.442786	-33(TAATATAAAAGG,-,0.00)
mm_950.1	chr1	57406651	57406851	+	1	NA	NA	NA	-77	NM_001302963	68736	Mm.288490	NM_001037742	ENSMUSG00000048495	Tyw5	1110034B05Rik	tRNA-yW synthesizing protein 5	protein-coding	0.085000	0.681592	
mm_2686.1	chr1	127306629	127306829	+	1	NA	NA	NA	101743	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.015000	0.542289	
mm_26368.1	chr3	142560454	142560654	+	1	NA	NA	NA	58	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.015000	0.462687	
mm_127758.1	chr15	103503175	103503375	+	1	NA	NA	NA	241	NM_008800	18574	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.110000	0.731343	
mm_94659.1	chr11	17159318	17159518	+	1	NA	NA	NA	120	NM_024459	19058	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0.145000	0.746269	
mm_166476.1	chr5	144026545	144026745	-	1	NA	NA	NA	-11792	NM_177682	231874	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0.015000	0.402985	10(GACTATATAAGG,-,0.00)
mm_64625.1	chr7	3677419	3677619	-	1	NA	NA	NA	34	NM_181820	353499	Mm.360398	NM_181820	ENSMUSG00000019734	Tmc4	-	transmembrane channel-like gene family 4	protein-coding	0.035000	0.636816	
mm_134997.1	chr16	32165374	32165574	-	1	NA	NA	NA	2	NM_146069	224109	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.075000	0.636816	
mm_135904.1	chr16	67182736	67182936	-	1	NA	NA	NA	438072	NM_001347247	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.015000	0.263682	
mm_25992.1	chr3	134236252	134236452	+	1	NA	NA	NA	-143	NM_001004367	319478	Mm.224814	NM_001004367	ENSMUSG00000044365	Cxxc4	9330210J02Rik|C030003J12Rik|Idax	CXXC finger 4	protein-coding	0.090000	0.691542	
mm_138199.1	chr17	34291770	34291970	+	1	NA	NA	NA	-4099	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.015000	0.507463	
mm_15715.1	chr2	164042272	164042472	+	1	NA	NA	NA	17148	NM_001114079	381404	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	0.050000	0.582090	
mm_5811.1	chr1	52500156	52500356	-	1	NA	NA	NA	192	NM_008667	17936	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	0.195000	0.830846	
mm_11496.1	chr2	32493569	32493769	+	1	NA	NA	NA	-41690	NM_153560	98952	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.035000	0.567164	
mm_121177.1	chr14	103046914	103047114	+	1	NA	NA	NA	2	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.015000	0.507463	-33(GTGTATAAAGGC,-,0.00)
mm_50845.1	chr6	54833381	54833581	+	1	NA	NA	NA	16565	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.010000	0.383085	
mm_1099.1	chr1	59763290	59763490	+	1	NA	NA	NA	-889	NM_007561	12168	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0.145000	0.791045	
mm_91805.1	chr10	53906330	53906530	-	1	NA	NA	NA	-155521	NM_001081428	75906	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0.000000	0.383085	-63(GTCTCTTTAAGC,-,0.00)
mm_147615.1	chr18	57418132	57418332	-	1	NA	NA	NA	-50254	NM_001134697	629147	Mm.57415	NM_001134697	ENSMUSG00000069372	Ctxn3	ENSMUSG00000069372	cortexin 3	protein-coding	0.000000	0.507463	-34(AGCTATATAAGA,-,0.00)
mm_143172.1	chr17	57226733	57226933	-	1	NA	NA	NA	1303	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.025000	0.542289	
mm_138214.1	chr17	34306568	34306768	+	1	NA	NA	NA	801	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.010000	0.552239	
mm_49797.1	chr6	35266011	35266211	+	1	NA	NA	NA	13379	NR_027875	67705	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	0.040000	0.557214	
mm_21586.1	chr2	164237268	164237468	-	1	NA	NA	NA	973	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.437811	
mm_87943.1	chr10	62920565	62920765	+	1	NA	NA	NA	32	NM_175194	73132	Mm.37457	NM_175194	ENSMUSG00000071253	Slc25a16	3110021G18Rik|GDA|GDC|HGT.1|ML7	solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	protein-coding	0.110000	0.706468	
mm_127031.1	chr15	96342472	96342672	+	1	NA	NA	NA	55050	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.005000	0.422886	
mm_75020.1	chr8	31163001	31163201	-	1	NA	NA	NA	5623	NM_026453	67920	Mm.289818	NM_026453	ENSMUSG00000031578	Mak16	2600016B03Rik|AI314911|Rbm13	MAK16 homolog	protein-coding	0.010000	0.427861	2(GCATTAATAGCT,+,0.00)
mm_134337.1	chr16	16527211	16527411	-	1	NA	NA	NA	100	NM_001301818	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.025000	0.422886	
mm_66815.1	chr7	48167438	48167638	-	1	NA	NA	NA	1447	NM_207538	404239	Mm.377927	NM_207538	ENSMUSG00000070551	Mrgprb5	Mgrg11|MrgB5	MAS-related GPR, member B5	protein-coding	0.010000	0.412935	
mm_75520.1	chr8	55906870	55907070	-	1	NA	NA	NA	-6	NM_175939	244486	Mm.67684	NM_175939	ENSMUSG00000046258	Adam29	-	a disintegrin and metallopeptidase domain 29	protein-coding	0.000000	0.348259	
mm_170467.1	chr18	9916745	9916945	+	1	NA	NA	NA	-41335	NM_153552	225160	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	0.020000	0.422886	
mm_31105.1	chr4	42880635	42880835	+	1	NA	NA	NA	-6532	NM_177785	277773	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	0.015000	0.542289	72(CACCTGAAAAGG,-,0.00)
mm_108979.1	chr12	102743663	102743863	+	1	NA	NA	NA	3	NM_177140	320351	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	0.110000	0.716418	
mm_171024.1	chr2	84510166	84510366	+	1	NA	NA	NA	-3393	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	0.040000	0.482587	12(CTCTTTAAAGAG,+,0.00),12(CTCTTTAAAGAG,-,0.00),14(CTTTAAAGAGGG,+,0.00)
mm_56880.1	chr6	119014272	119014472	-	1	NA	NA	NA	94123	NM_001159534	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.010000	0.328358	
mm_25596.1	chr3	116899806	116900006	+	1	NA	NA	NA	38226	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.020000	0.407960	-91(CCTTATATATGC,+,0.00)
mm_134205.1	chr16	11150035	11150235	-	1	NA	NA	NA	-15603	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.005000	0.348259	
mm_105618.1	chr11	106788807	106789007	-	1	NA	NA	NA	-345	NM_177088	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.070000	0.592040	
mm_113124.1	chr13	24575479	24575679	+	1	NA	NA	NA	-6610	NM_001286100	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.010000	0.462687	
mm_150391.1	chr19	36409580	36409780	+	1	NA	NA	NA	30613	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.135000	0.791045	
mm_166669.1	chr6	91233447	91233647	+	1	NA	NA	NA	20783	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.035000	0.601990	
mm_168564.1	chr11	69415956	69416156	-	1	NA	NA	NA	-2381	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.045000	0.721393	
mm_76860.1	chr8	105471236	105471436	-	1	NA	NA	NA	86	NM_026481	67971	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0.070000	0.621891	
mm_139375.1	chr17	51832912	51833112	+	1	NA	NA	NA	278	NM_001163632	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.140000	0.800995	
mm_154902.1	chrX	20961571	20961771	+	1	NA	NA	NA	-5	NR_027445	320742	Mm.391227	NR_027445		A230072C01Rik	-	RIKEN cDNA A230072C01 gene	ncRNA	0.080000	0.567164	
mm_93507.1	chr10	114802140	114802340	-	1	NA	NA	NA	-870	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	0.075000	0.601990	
mm_109446.1	chr12	110897979	110898179	+	1	NA	NA	NA	8815	NM_001081057	104859	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	0.035000	0.487562	
mm_105955.1	chr11	115367575	115367775	-	1	NA	NA	NA	44	NM_175454	217310	Mm.205707	NM_175454	ENSMUSG00000034586	Hid1	C630004H02Rik	HID1 domain containing	protein-coding	0.100000	0.696517	
mm_143221.1	chr17	63264953	63265153	-	1	NA	NA	NA	47920	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.000000	0.203980	
mm_84233.1	chr9	62122507	62122707	-	1	NA	NA	NA	-13	NR_039595	100628602		NR_039595	ENSMUSG00000092696	Mir5133	mir-5133|mmu-mir-5133|mu-mir-5133	microRNA 5133	ncRNA	0.130000	0.741294	
mm_172086.1	chr6	148946291	148946491	-	1	NA	NA	NA	41	NM_019643	56306	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Tera	family with sequence similarity 60, member A	protein-coding	0.080000	0.597015	
mm_112388.1	chr12	119238232	119238432	-	1	NA	NA	NA	-56	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.045000	0.606965	
mm_157878.1	chrX	75842153	75842353	-	1	NA	NA	NA	768	NM_001166454	102866	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	0.005000	0.263682	
mm_62106.1	chr7	96406719	96406919	+	1	NA	NA	NA	-64855	NR_046043	670727	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	OTTMUSG00000021245	predicted gene 15412	ncRNA	0.015000	0.532338	
mm_110644.1	chr12	58269075	58269275	-	1	NA	NA	NA	83	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	0.030000	0.532338	
mm_77431.1	chr8	121541868	121542068	-	1	NA	NA	NA	-14	NM_029597	76405	Mm.165697	NM_029597	ENSMUSG00000031809	1700018B08Rik	1700084O22Rik	RIKEN cDNA 1700018B08 gene	protein-coding	0.045000	0.567164	
mm_39961.1	chr5	32136529	32136729	+	1	NA	NA	NA	157	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.100000	0.671642	
mm_79772.1	chr9	62838562	62838762	+	1	NA	NA	NA	-125	NM_001033175	76524	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.025000	0.666667	
mm_71528.1	chr8	46868377	46868577	+	1	NA	NA	NA	-118410	NM_177304	320981	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.010000	0.482587	
mm_65627.1	chr7	27541873	27542073	-	1	NA	NA	NA	11245	NM_011116	18807	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.020000	0.547264	
mm_10017.1	chr1	192064526	192064726	-	1	NA	NA	NA	27973	NM_011633	22033	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.000000	0.412935	
mm_72701.1	chr8	84978069	84978269	+	1	NA	NA	NA	579	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.085000	0.656716	
mm_48344.1	chr5	139316235	139316435	-	1	NA	NA	NA	9129	NM_172723	231821	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.010000	0.512438	
mm_39907.1	chr5	31291259	31291459	+	1	NA	NA	NA	-245	NM_026298	67661	Mm.293023	NM_026298	ENSMUSG00000038564	Ift172	4930553F24Rik|Slb|avc1|wim	intraflagellar transport 172	protein-coding	0.055000	0.492537	
mm_60775.1	chr7	45559263	45559463	+	1	NA	NA	NA	4435	NM_025330	66065	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.015000	0.631841	10(CCCTTTAGACCC,+,0.00)
mm_163188.1	chr11	94939015	94939215	+	1	NA	NA	NA	2891	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.010000	0.442786	
mm_114313.1	chr13	59829191	59829391	+	1	NA	NA	NA	-6144	NM_153538	214290	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.015000	0.492537	
mm_126115.1	chr15	78261189	78261389	+	1	NA	NA	NA	16478	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.020000	0.462687	
mm_99446.1	chr11	102433426	102433626	+	1	NA	NA	NA	3204	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.010000	0.577114	
mm_164281.1	chr15	102406286	102406486	+	1	NA	NA	NA	70	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.085000	0.706468	
mm_100500.1	chr11	120484541	120484741	+	1	NA	NA	NA	-28	NM_027204	56282	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	0.115000	0.681592	
mm_150571.1	chr19	40113570	40113770	+	1	NA	NA	NA	23991	NM_001167875	107141	Mm.474575	NM_134144	ENSMUSG00000054827	Cyp2c50	AI266900	cytochrome P450, family 2, subfamily c, polypeptide 50	protein-coding	0.000000	0.437811	
mm_79857.1	chr9	65018722	65018922	+	1	NA	NA	NA	2895	NM_021345	57874	Mm.308180	NM_021345	ENSMUSG00000033629	Hacd3	4930523M17Rik|AW742319|B-ind1|Hcad3|Hspc121|Ptplad1	3-hydroxyacyl-CoA dehydratase 3	protein-coding	0.000000	0.378109	
mm_130752.1	chr15	101270326	101270526	-	1	NA	NA	NA	3580	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.050000	0.606965	
mm_49804.1	chr6	36387897	36388097	+	1	NA	NA	NA	-87	NM_203491	243764	Mm.448632	NM_203491	ENSMUSG00000045613	Chrm2	AChR-M2|Chrm-2|M2	cholinergic receptor, muscarinic 2, cardiac	protein-coding	0.055000	0.517413	
mm_23753.1	chr3	69721995	69722195	+	1	NA	NA	NA	40	NM_133787	97112	Mm.21062	NM_133787	ENSMUSG00000027787	Nmd3	C87860	NMD3 ribosome export adaptor	protein-coding	0.105000	0.666667	
mm_98192.1	chr11	87793965	87794165	+	1	NA	NA	NA	281	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.010000	0.527363	
mm_22494.1	chr3	6107443	6107643	+	1	NA	NA	NA	512900	NM_027048	69347	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	0.015000	0.442786	
mm_10656.1	chr2	20722209	20722409	+	1	NA	NA	NA	202796	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.010000	0.388060	
mm_147401.1	chr18	44574564	44574764	-	1	NA	NA	NA	-87001	NR_026853	626275	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	0.030000	0.552239	-33(TCATTAAAAGGC,+,0.00)
mm_151952.1	chr19	5801200	5801400	-	1	NA	NA	NA	1372	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.025000	0.552239	
mm_51841.1	chr6	90302415	90302615	+	1	NA	NA	NA	1245	NM_177738	243535	Mm.233854	NM_177738	ENSMUSG00000049694	BC048671	-	cDNA sequence BC048671	protein-coding	0.000000	0.512438	
mm_23095.1	chr3	37063586	37063786	+	1	NA	NA	NA	30	NM_009350	21744	Mm.8122	NM_009350	ENSMUSG00000027719	Adad1	Tenr	adenosine deaminase domain containing 1 (testis specific)	protein-coding	0.130000	0.741294	
mm_83619.1	chr9	48808121	48808321	-	1	NA	NA	NA	27724	NM_001033324	235320	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0.015000	0.507463	
mm_147864.1	chr18	64342261	64342461	-	1	NA	NA	NA	1997	NM_194268	225631	Mm.234723	NM_194268	ENSMUSG00000045991	Onecut2	C730009D12|OC-2|Oc2	one cut domain, family member 2	protein-coding	0.025000	0.502488	
mm_45079.1	chr5	43948220	43948420	-	1	NA	NA	NA	33479	NM_008009	14181	Mm.46053	NM_008009	ENSMUSG00000048373	Fgfbp1	FGF-BP|FGF-BP1|FGFBP-1	fibroblast growth factor binding protein 1	protein-coding	0.035000	0.587065	
mm_7695.1	chr1	129550227	129550427	-	1	NA	NA	NA	277023	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	0.010000	0.422886	
mm_119148.1	chr14	31435135	31435335	+	1	NA	NA	NA	865	NM_011894	24056	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.055000	0.597015	
mm_167188.1	chr7	142471907	142472107	+	1	NA	NA	NA	164	NM_019391	16985	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.010000	0.631841	
mm_63206.1	chr7	126248250	126248450	+	1	NA	NA	NA	-112	NR_131046	76728	Mm.76920	NR_131046	ENSMUSG00000108676	1700123J17Rik	-	RIKEN cDNA 1700123J17 gene	ncRNA	0.015000	0.572139	
mm_52551.1	chr6	115989198	115989398	+	1	NA	NA	NA	5707	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.010000	0.592040	
mm_37828.1	chr4	131982628	131982828	-	1	NA	NA	NA	60957	NM_001201367	623230	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.015000	0.353234	
mm_61300.1	chr7	67937044	67937244	+	1	NA	NA	NA	-15113	NM_010513	16001	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.030000	0.432836	
mm_91196.1	chr10	21152858	21153058	-	1	NA	NA	NA	8026	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.020000	0.477612	
mm_26702.1	chr3	157566846	157567046	+	1	NA	NA	NA	54	NM_011196	19218	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0.115000	0.751244	
mm_117768.1	chr13	96542228	96542428	-	1	NA	NA	NA	251	NM_012048	27015	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	0.070000	0.582090	
mm_143784.1	chr17	81731021	81731221	-	1	NA	NA	NA	7266	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.373134	
mm_50511.1	chr6	49038087	49038287	+	1	NA	NA	NA	1669	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.005000	0.467662	
mm_16337.1	chr2	174330019	174330219	+	1	NA	NA	NA	30	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.165000	0.805970	
mm_87653.1	chr10	58446730	58446930	+	1	NA	NA	NA	-22	NM_011240	19386	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0.155000	0.696517	
mm_166835.1	chr7	19271598	19271798	-	1	NA	NA	NA	156	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.090000	0.691542	
mm_70765.1	chr8	21823441	21823641	+	1	NA	NA	NA	2	NM_199067	387334	Mm.346928	NM_199067	ENSMUSG00000058568	Defb50	AY387658|BD-50|Defb37|Pbd1|mBD-50	defensin beta 50	protein-coding	0.005000	0.447761	
mm_5531.1	chr1	37996869	37997069	-	1	NA	NA	NA	239	NM_172054	98258	Mm.28438	NM_172054	ENSMUSG00000058407	Txndc9	AI098020|APACD	thioredoxin domain containing 9	protein-coding	0.070000	0.626866	
mm_109999.1	chr12	15816044	15816244	-	1	NA	NA	NA	641	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.035000	0.482587	
mm_133791.1	chr16	95258222	95258422	+	1	NA	NA	NA	764	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.015000	0.527363	
mm_152488.1	chr19	11050416	11050616	-	1	NA	NA	NA	50	NR_102366	107350	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.005000	0.417910	
mm_104159.1	chr11	87293825	87294025	-	1	NA	NA	NA	65069	NM_177167	320472	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	0.000000	0.437811	
mm_46730.1	chr5	110772746	110772946	-	1	NA	NA	NA	-2129	NM_173066	75560	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	0.015000	0.452736	
mm_43056.1	chr5	124187035	124187235	+	1	NA	NA	NA	47	NM_001289472	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.050000	0.666667	
mm_66624.1	chr7	45484410	45484610	-	1	NA	NA	NA	-1752	NM_001290996	56734	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0.025000	0.562189	
mm_128970.1	chr15	74832147	74832347	-	1	NA	NA	NA	9396	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.000000	0.467662	
mm_109336.1	chr12	109581793	109581993	+	1	NA	NA	NA	1660	NR_030573	100124466		NR_030573	ENSMUSG00000077025	Mir493	Mirn493|mmu-mir-493	microRNA 493	ncRNA	0.005000	0.492537	
mm_111458.1	chr12	98386777	98386977	-	1	NA	NA	NA	118242	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.000000	0.343284	
mm_119841.1	chr14	54431602	54431802	+	1	NA	NA	NA	104	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.050000	0.527363	
mm_149194.1	chr19	9954667	9954867	+	1	NA	NA	NA	-25833	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.015000	0.457711	
mm_58497.1	chr7	3704471	3704671	+	1	NA	NA	NA	530	NM_029767	76846	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	0.060000	0.547264	
mm_50826.1	chr6	54596618	54596818	+	1	NA	NA	NA	1607	NM_001164361	231999	Mm.35416	NM_001001335	ENSMUSG00000005225	Plekha8	6330400G01|AA517676|BC052360|Fapp-2|Fapp2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	protein-coding	0.005000	0.447761	
mm_80029.1	chr9	68653673	68653873	+	1	NA	NA	NA	-13	NM_001289917	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.080000	0.552239	
mm_15296.1	chr2	155382957	155383157	+	1	NA	NA	NA	1201	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.000000	0.527363	
mm_18537.1	chr2	64393710	64393910	-	1	NA	NA	NA	-295772	NM_001267847	60344	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.015000	0.402985	
mm_101797.1	chr11	46221332	46221532	-	1	NA	NA	NA	-10703	NR_105955	102465598		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0.035000	0.567164	
mm_64196.1	chr7	141467307	141467507	+	1	NA	NA	NA	45	NM_001111049	12476	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0.105000	0.696517	
mm_25683.1	chr3	122243016	122243216	+	1	NA	NA	NA	-2441	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.020000	0.512438	
mm_13894.1	chr2	120406012	120406212	+	1	NA	NA	NA	-1996	NM_001110496	211499	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0.005000	0.393035	
mm_73386.1	chr8	105686183	105686383	+	1	NA	NA	NA	-4623	NM_001033320	234695	Mm.471640	NM_001033320	ENSMUSG00000050357	Carmil2	CG1399-PB|D130029J02Rik|Gm585|Rltpr	capping protein regulator and myosin 1 linker 2	protein-coding	0.045000	0.631841	
mm_98921.1	chr11	98348370	98348570	+	1	NA	NA	NA	64	NM_144828	19049	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0.060000	0.641791	-73(CTCCCTTAAAAG,-,0.00),-72(TCCCTTAAAAGT,-,0.00),-71(CCCTTAAAAGTC,+,0.00),-70(CCTTAAAAGTCC,+,0.00)
mm_163153.1	chr11	83604733	83604933	-	1	NA	NA	NA	-11746	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.000000	0.482587	
mm_138473.1	chr17	35194313	35194513	+	1	NA	NA	NA	-94	NM_008518	16994	Mm.1715	NM_008518	ENSMUSG00000024399	Ltb	AI662801|LTbeta|Tnfc|Tnfsf3|Tnlg1c|p33	lymphotoxin B	protein-coding	0.030000	0.651741	
mm_111710.1	chr12	103695432	103695632	-	1	NA	NA	NA	-3	NM_026687	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding	0.025000	0.532338	
mm_15487.1	chr2	157562087	157562287	+	1	NA	NA	NA	2109	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.020000	0.517413	
mm_66524.1	chr7	45126574	45126774	-	1	NA	NA	NA	-6	NR_002455	27210		NR_002455	ENSMUSG00000065878	Snord34	Rnu34|U34	small nucleolar RNA, C/D box 34	snoRNA	0.020000	0.557214	
mm_20416.1	chr2	129300648	129300848	-	1	NA	NA	NA	3378	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.015000	0.447761	
mm_1331.1	chr1	65247085	65247285	+	1	NA	NA	NA	60500	NM_001310624	18711	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE finger containing	protein-coding	0.005000	0.378109	
mm_126566.1	chr15	82171126	82171326	+	1	NA	NA	NA	23957	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.065000	0.621891	
mm_55629.1	chr6	72314581	72314781	-	1	NA	NA	NA	10071	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.005000	0.398010	
mm_128911.1	chr15	73487239	73487439	-	1	NA	NA	NA	-25221	NM_001081066	105841	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.005000	0.552239	
mm_46486.1	chr5	105132020	105132220	-	1	NA	NA	NA	7432	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.298507	
mm_92105.1	chr10	63023680	63023880	-	1	NA	NA	NA	69	NM_001079824	432467	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	0.125000	0.706468	
mm_65718.1	chr7	28378397	28378597	-	1	NA	NA	NA	731	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.065000	0.567164	-34(CCTTTTCTGGTG,+,0.00)
mm_34506.1	chr4	148667143	148667343	+	1	NA	NA	NA	23926	NM_001085505	230909	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	0.015000	0.552239	
mm_100299.1	chr11	117832193	117832393	+	1	NA	NA	NA	-6279	NM_009387	21877	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.040000	0.631841	
mm_151668.1	chr19	4181825	4182025	-	1	NA	NA	NA	-6446	NM_134148	107239	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	0.010000	0.437811	-35(CTGTCTATAAAG,-,0.00),-33(GTCTATAAAGCC,+,0.00)
mm_159672.1	chr4	154871430	154871630	+	1	NA	NA	NA	1945	NM_013783	27390	Mm.116944	NM_013783	ENSMUSG00000058183	Mmel1	Mell1|NEP2|NEPII|Nl1|SEP	membrane metallo-endopeptidase-like 1	protein-coding	0.025000	0.611940	
mm_140118.1	chr17	78937054	78937254	+	1	NA	NA	NA	19	NM_028611	73694	Mm.104959	NM_028611	ENSMUSG00000024082	Ndufaf7	2410091C18Rik|AL033374|PRO1853	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7	protein-coding	0.095000	0.611940	
mm_16183.1	chr2	172949639	172949839	+	1	NA	NA	NA	-9418	NM_007557	12162	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	0.030000	0.442786	
mm_65040.1	chr7	18567094	18567294	-	1	NA	NA	NA	111	NM_001037168	545925	Mm.440302	NM_001037168	ENSMUSG00000070797	Psg27	EG545925|cea15	pregnancy-specific glycoprotein 27	protein-coding	0.005000	0.547264	
mm_159136.1	chr2	77946083	77946283	-	1	NA	NA	NA	173	NM_001290740	80744	Mm.288151	NM_030560	ENSMUSG00000027014	Cwc22	AA684037|AI173004|AL022752|B230213M24|mKIAA1604	CWC22 spliceosome-associated protein	protein-coding	0.070000	0.507463	
mm_104744.1	chr11	98443864	98444064	-	1	NA	NA	NA	-2870	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.000000	0.402985	
mm_137174.1	chr17	23815196	23815396	+	1	NA	NA	NA	12109	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.025000	0.572139	
mm_146304.1	chr18	80255192	80255392	+	1	NA	NA	NA	47	NM_001164420	66943	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.015000	0.532338	
mm_38974.1	chr4	150907268	150907468	-	1	NA	NA	NA	2553	NM_020569	57320	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.020000	0.497512	
mm_5093.1	chr1	4785608	4785808	-	1	NA	NA	NA	18	NR_033530	27395	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	0.125000	0.726368	
mm_122622.1	chr14	51145478	51145678	-	1	NA	NA	NA	1189	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.000000	0.527363	
mm_97465.1	chr11	78263308	78263508	+	1	NA	NA	NA	1654	NM_001002004	72503	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0.010000	0.432836	
mm_158170.1	chrX	103623633	103623833	-	1	NA	NA	NA	21	NR_028381	78878	Mm.259724	NR_028380	ENSMUSG00000086370	Ftx	B230206F22Rik|BB219131|NCRNA00182|Thcytx	Ftx transcript, Xist regulator (non-protein coding)	ncRNA	0.085000	0.631841	
mm_112395.1	chr12	119238550	119238750	-	1	NA	NA	NA	-374	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.050000	0.636816	
mm_116418.1	chr13	41606322	41606522	-	1	NA	NA	NA	206	NM_001163572	621976	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.125000	0.711443	
mm_84639.1	chr9	71165113	71165313	-	1	NA	NA	NA	-1924	NM_022026	64008	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.020000	0.522388	
mm_88674.1	chr10	80019258	80019458	+	1	NA	NA	NA	-317	NM_027521	70719	Mm.243954	NM_027521	ENSMUSG00000035697	Hmha1	6330406L22Rik|AW539505|Ha-1	histocompatibility (minor) HA-1	protein-coding	0.025000	0.537313	34(GTGCATTTAAGG,-,0.00),36(GCATTTAAGGCT,+,0.00)
mm_119055.1	chr14	30715520	30715720	+	1	NA	NA	NA	5	NM_001166532	54650	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.160000	0.796020	
mm_133753.1	chr16	94424995	94425195	+	1	NA	NA	NA	-54080	NM_001159617	56176	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0.005000	0.278607	
mm_115600.1	chr13	11887454	11887654	-	1	NA	NA	NA	219391	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.000000	0.328358	
mm_161505.1	chr15	97789666	97789866	+	1	NA	NA	NA	5401	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.020000	0.567164	
mm_111298.1	chr12	85485834	85486034	-	1	NA	NA	NA	12033	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.040000	0.631841	
mm_143695.1	chr17	80450536	80450736	-	1	NA	NA	NA	29817	NM_009231	20662	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	son of sevenless homolog 1 (Drosophila)	protein-coding	0.000000	0.378109	
mm_134834.1	chr16	26164170	26164370	-	1	NA	NA	NA	-58486	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.010000	0.457711	
mm_162787.1	chr10	72957848	72958048	+	1	NA	NA	NA	128757	NR_040646	327768	Mm.417745	NR_040646		A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0.005000	0.343284	
mm_166252.1	chr5	82701850	82702050	+	1	NA	NA	NA	97115	NR_035415	100316803		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA	0.005000	0.437811	
mm_44565.1	chr5	24685271	24685471	-	1	NA	NA	NA	-444	NM_016736	53312	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0.020000	0.477612	
mm_162675.1	chr10	8762291	8762491	-	1	NA	NA	NA	123679	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.005000	0.502488	
mm_131056.1	chr16	4213295	4213495	+	1	NA	NA	NA	9	NM_001025432	12914	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0.160000	0.815920	
mm_44926.1	chr5	36036884	36037084	-	1	NA	NA	NA	143665	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	0.000000	0.482587	
mm_38448.1	chr4	140037635	140037835	-	1	NA	NA	NA	-69709	NM_173427	242721	Mm.60400	NM_173427	ENSMUSG00000078234	Klhdc7a	B230308G19Rik	kelch domain containing 7A	protein-coding	0.010000	0.552239	
mm_103014.1	chr11	69734692	69734892	-	1	NA	NA	NA	23841	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.000000	0.512438	
mm_120682.1	chr14	70636017	70636217	+	1	NA	NA	NA	-69	NM_001252664	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.055000	0.666667	
mm_99130.1	chr11	100319775	100319975	+	1	NA	NA	NA	-74	NM_011508	20918	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.090000	0.651741	78(GGCTATATAAGT,-,0.00)
mm_130860.1	chr15	102188890	102189090	-	1	NA	NA	NA	53	NM_144942	246277	Mm.296382	NM_144942	ENSMUSG00000023044	Csad	Csd	cysteine sulfinic acid decarboxylase	protein-coding	0.010000	0.502488	
mm_99863.1	chr11	109394131	109394331	+	1	NA	NA	NA	-30577	NR_038097	100036768	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	OTTMUSG00000003456	predicted gene 11696	ncRNA	0.010000	0.398010	
mm_78773.1	chr9	43743857	43744057	+	1	NA	NA	NA	-619	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	0.095000	0.711443	
mm_80550.1	chr9	82830359	82830559	+	1	NA	NA	NA	653	NM_022986	65099	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	0.030000	0.457711	
mm_23339.1	chr3	54692759	54692959	+	1	NA	NA	NA	-246	NM_019995	56790	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0.085000	0.661692	
mm_66687.1	chr7	45830696	45830896	-	1	NA	NA	NA	-7	NM_153419	101612	Mm.274847	NM_153419	ENSMUSG00000053801	Grwd1	A301|AI504353|Grwd|Wdr28	glutamate-rich WD repeat containing 1	protein-coding	0.080000	0.606965	
mm_96284.1	chr11	63051234	63051434	+	1	NA	NA	NA	-10325	NM_027660	71062	Mm.23534	NM_027660	ENSMUSG00000042189	Tekt3	4933407G07Rik	tektin 3	protein-coding	0.015000	0.477612	
mm_73095.1	chr8	94562275	94562475	+	1	NA	NA	NA	29347	NM_153507	234577	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0.005000	0.512438	
mm_128190.1	chr15	34878727	34878927	-	1	NA	NA	NA	40778	NM_001271704	16539	Mm.71045	NM_181317	ENSMUSG00000050963	Kcns2	E130006J24Rik|Kv9.2	K+ voltage-gated channel, subfamily S, 2	protein-coding	0.015000	0.537313	
mm_110412.1	chr12	46626606	46626806	-	1	NA	NA	NA	192069	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.010000	0.477612	
mm_25866.1	chr3	129881069	129881269	+	1	NA	NA	NA	-15	NM_183423	66350	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	0.025000	0.532338	
mm_53820.1	chr6	147099465	147099665	+	1	NA	NA	NA	8490	NM_001081237	232539	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	0.040000	0.542289	
mm_51908.1	chr6	91157282	91157482	+	1	NA	NA	NA	567	NM_144919	232232	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	0.025000	0.507463	
mm_79976.1	chr9	66754303	66754503	+	1	NA	NA	NA	40717	NM_001306148	76459	Mm.277921	NM_178396	ENSMUSG00000032373	Car12	2310047E01Rik|AI314958|CA-XII|Ca12	carbonic anhydrase 12	protein-coding	0.005000	0.318408	
mm_160932.1	chr11	90663090	90663290	-	1	NA	NA	NA	24411	NM_028011	71943	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	0.015000	0.477612	18(GGCCCTAAAAGC,-,0.00)
mm_18088.1	chr2	44983804	44984004	-	1	NA	NA	NA	39273	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.308458	
mm_169836.1	chr16	25855410	25855610	-	1	NA	NA	NA	53594	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.010000	0.388060	
mm_106232.1	chr11	117360460	117360660	-	1	NA	NA	NA	28247	NM_001113488	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.050000	0.562189	
mm_87490.1	chr10	51494986	51495186	+	1	NA	NA	NA	4188	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.005000	0.462687	
mm_22913.1	chr3	31093934	31094134	+	1	NA	NA	NA	-1024	NM_011386	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.050000	0.502488	
mm_1198.1	chr1	62708715	62708915	+	1	NA	NA	NA	5498	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.020000	0.507463	-68(GGGCATATATGC,-,0.00)
mm_71580.1	chr8	54582531	54582731	+	1	NA	NA	NA	-18150	NM_133711	69281	Mm.45833	NM_133711	ENSMUSG00000031518	Spata4	1700001N01Rik|Srg2|TSARG2	spermatogenesis associated 4	protein-coding	0.010000	0.308458	-77(GTTTATAAAAAG,-,0.00)
mm_3592.1	chr1	151428565	151428765	+	1	NA	NA	NA	17	NM_026876	98685	Mm.289373	NM_026876	ENSMUSG00000053286	Trmt1l	1190005F20Rik|AW226554|C1orf25|Trm1-like|Trm1l	tRNA methyltransferase 1 like	protein-coding	0.090000	0.597015	
mm_3625.1	chr1	152766539	152766739	+	1	NA	NA	NA	97	NM_026369	67771	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	0.115000	0.701493	
mm_22112.1	chr2	170133454	170133654	-	1	NA	NA	NA	-2334	NM_001033299	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.080000	0.547264	
mm_30635.1	chr4	8811231	8811431	+	1	NA	NA	NA	120925	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.045000	0.542289	
mm_135839.1	chr16	58524093	58524293	-	1	NA	NA	NA	-881	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.020000	0.472637	
mm_131083.1	chr16	4756780	4756980	+	1	NA	NA	NA	15267	NM_010443	15369	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.130000	0.731343	
mm_135285.1	chr16	38448333	38448533	-	1	NA	NA	NA	4256	NM_007414	11544	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.040000	0.547264	-33(TGGTTTATAAGG,-,0.00),-31(GTTTATAAGGGC,+,0.00)
mm_1045.1	chr1	58795601	58795801	+	1	NA	NA	NA	327	NM_009812	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.085000	0.681592	
mm_168678.1	chr1	195240681	195240881	-	1	NA	NA	NA	-64066	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0.050000	0.601990	
mm_104521.1	chr11	96065239	96065439	-	1	NA	NA	NA	25	NM_172300	268470	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	0.125000	0.746269	
mm_139347.1	chr17	50470588	50470788	+	1	NA	NA	NA	-38859	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.035000	0.497512	
mm_173044.1	chrX	116287273	116287473	-	1	NA	NA	NA	-161571	NM_001033471	382239	Mm.336224	NM_001033471	ENSMUSG00000072995	Cpxcr1	Gm1143	CPX chromosome region, candidate 1	protein-coding	0.060000	0.457711	
mm_106431.1	chr11	119390992	119391192	-	1	NA	NA	NA	620	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.025000	0.537313	
mm_71736.1	chr8	62017045	62017245	+	1	NA	NA	NA	89058	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.005000	0.338308	-74(TTCTTTTAAAGA,-,0.00),-73(TCTTTTAAAGAC,+,0.00)
mm_140678.1	chr17	12992138	12992338	-	1	NA	NA	NA	21	NM_001113533	60532	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.150000	0.776119	
mm_147302.1	chr18	39519229	39519429	-	1	NA	NA	NA	-32084	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.030000	0.547264	
mm_83858.1	chr9	54647125	54647325	-	1	NA	NA	NA	14660	NM_053178	94180	Mm.20592	NM_053178	ENSMUSG00000032281	Acsbg1	BG1|Bgm|E230019G03Rik|GR-LACS|Lpd|R75185	acyl-CoA synthetase bubblegum family member 1	protein-coding	0.030000	0.626866	
mm_137284.1	chr17	24730796	24730996	+	1	NA	NA	NA	-1789	NM_025425	66211	Mm.46198	NM_025425	ENSMUSG00000002500	Rpl3l	1110057H16Rik	ribosomal protein L3-like	protein-coding	0.035000	0.542289	
mm_142903.1	chr17	52285405	52285605	-	1	NA	NA	NA	-317204	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.005000	0.482587	
mm_33031.1	chr4	122689206	122689406	+	1	NA	NA	NA	47	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	0.005000	0.447761	
mm_96632.1	chr11	69323960	69324160	+	1	NA	NA	NA	74	NM_001024206	245828	Mm.28073	NM_001024206	ENSMUSG00000049299	Trappc1	BET5|D11Ertd172e|MUM2	trafficking protein particle complex 1	protein-coding	0.040000	0.537313	-42(GGCTTTATAAAC,-,0.00),-40(CTTTATAAACCG,+,0.00)
mm_126533.1	chr15	82017012	82017212	+	1	NA	NA	NA	743	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.020000	0.457711	
mm_2838.1	chr1	131528269	131528469	+	1	NA	NA	NA	466	NM_175382	108900	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	0.060000	0.562189	-34(AGGCTTTAAAGG,-,0.00),-33(GGCTTTAAAGGG,-,0.00),-32(GCTTTAAAGGGA,+,0.00)
mm_69141.1	chr7	127051576	127051776	-	1	NA	NA	NA	301	NM_026918	69036	Mm.21835	NM_026918	ENSMUSG00000049350	Zg16	1810010M01Rik|AI593689|ZG16p	zymogen granule protein 16	protein-coding	0.035000	0.502488	
mm_30901.1	chr4	32335943	32336143	+	1	NA	NA	NA	-81392	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.015000	0.437811	
mm_103058.1	chr11	69834570	69834770	-	1	NA	NA	NA	179	NM_198862	216856	Mm.151293	NM_198862	ENSMUSG00000051790	Nlgn2	NL2	neuroligin 2	protein-coding	0.020000	0.562189	
mm_86898.1	chr10	22302958	22303158	+	1	NA	NA	NA	-3662	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.000000	0.412935	
mm_121983.1	chr14	25861781	25861981	-	1	NA	NA	NA	19726	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.010000	0.482587	
mm_128011.1	chr15	13173554	13173754	-	1	NA	NA	NA	21	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.020000	0.592040	
mm_27875.1	chr3	79169712	79169912	-	1	NA	NA	NA	-23937	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.020000	0.432836	
mm_1986.1	chr1	87099611	87099811	+	1	NA	NA	NA	1895	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.015000	0.527363	
mm_143756.1	chr17	81601117	81601317	-	1	NA	NA	NA	137170	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.010000	0.407960	
mm_125089.1	chr15	27466690	27466890	+	1	NA	NA	NA	113	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.115000	0.716418	
mm_80806.1	chr9	96322053	96322253	+	1	NA	NA	NA	42146	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.010000	0.417910	-70(GCATTTATACTG,+,0.00)
mm_68829.1	chr7	126200250	126200450	-	1	NA	NA	NA	58	NM_028816	74204	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|mKIAA0370	exportin 6	protein-coding	0.110000	0.756219	
mm_18672.1	chr2	71044877	71045077	-	1	NA	NA	NA	10629	NM_145524	228019	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.000000	0.393035	
mm_12019.1	chr2	58153927	58154127	+	1	NA	NA	NA	6095	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.015000	0.422886	
mm_125307.1	chr15	37337582	37337782	+	1	NA	NA	NA	-87872	NM_029113	74892	Mm.107630	NM_029113	ENSMUSG00000022288	4930447A16Rik	-	RIKEN cDNA 4930447A16 gene	protein-coding	0.005000	0.422886	
mm_130099.1	chr15	89425764	89425964	-	1	NA	NA	NA	-2	NM_009948	12895	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	0.020000	0.606965	
mm_10293.1	chr2	10372242	10372442	+	1	NA	NA	NA	-94	NM_001198809	353282	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0.060000	0.577114	
mm_4266.1	chr1	171503333	171503533	+	1	NA	NA	NA	-45	NM_019484	56009	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	0.060000	0.522388	-97(CCTTTTAAATTA,+,0.00)
mm_155813.1	chrX	100428809	100429009	+	1	NA	NA	NA	-104	NM_001163191	408193	Mm.469910	NM_001163191	ENSMUSG00000051582	Otud6a	EG408193|Hshin6	OTU domain containing 6A	protein-coding	0.035000	0.552239	
mm_131817.1	chr16	22920271	22920471	+	1	NA	NA	NA	149	NM_001083904	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.020000	0.477612	
mm_100336.1	chr11	118342513	118342713	+	1	NA	NA	NA	-79	NM_021440	58251	Mm.439815	NM_021440	ENSMUSG00000076433	BC100451	Cep295nl|Ddc8|FS39|Kiaa1731nl	cDNA sequence BC100451	protein-coding	0.000000	0.537313	
mm_77744.1	chr8	126979365	126979565	-	1	NA	NA	NA	-8386	NM_172762	52202	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	0.035000	0.512438	
mm_72003.1	chr8	70673649	70673849	+	1	NA	NA	NA	518	NM_015816	50783	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.035000	0.522388	
mm_37763.1	chr4	129696639	129696839	-	1	NA	NA	NA	99	NM_199305	230770	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	0.125000	0.726368	
mm_153827.1	chr19	46317859	46318059	-	1	NA	NA	NA	8907	NM_001347454	73728	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.195000	0.860697	
mm_15075.1	chr2	153120281	153120481	+	1	NA	NA	NA	11913	NM_010407	15162	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.025000	0.512438	
mm_23309.1	chr3	53041533	53041733	+	1	NA	NA	NA	86	NM_175386	108927	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968	lipoma HMGIC fusion partner	protein-coding	0.080000	0.661692	
mm_56710.1	chr6	115251968	115252168	-	1	NA	NA	NA	-219	NM_080639	110595	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	TIMP-4	tissue inhibitor of metalloproteinase 4	protein-coding	0.005000	0.437811	
mm_128348.1	chr15	39857323	39857523	-	1	NA	NA	NA	47	NM_001164466	64705	Mm.275974	NM_022722	ENSMUSG00000022304	Dpys	1200017I10Rik|1300004I01Rik|DHP|DHPase	dihydropyrimidinase	protein-coding	0.045000	0.577114	
mm_15622.1	chr2	162045199	162045399	+	1	NA	NA	NA	-345514	NR_040617	77645	Mm.447752	NR_040617	ENSMUSG00000084919	Ptprtos	C330008G21Rik	protein tyrosine phosphatase, receptor type T, opposite strand	ncRNA	0.010000	0.393035	-37(TTCTCTAAAAGA,-,0.00)
mm_45115.1	chr5	45639288	45639488	-	1	NA	NA	NA	113	NR_102378	319251	Mm.402857	NR_102378	ENSMUSG00000097825	9630001P10Rik	-	RIKEN cDNA 9630001P10 gene	ncRNA	0.105000	0.671642	
mm_8014.1	chr1	134866472	134866672	-	1	NA	NA	NA	-62851	NR_015606	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.010000	0.402985	
mm_122723.1	chr14	52314680	52314880	-	1	NA	NA	NA	1543	NM_001244916	50524	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding	0.025000	0.631841	
mm_32360.1	chr4	105157532	105157732	+	1	NA	NA	NA	285	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.085000	0.626866	
mm_124115.1	chr14	79481332	79481532	-	1	NA	NA	NA	-164	NM_018765	22380	Mm.476813	NM_018765	ENSMUSG00000022023	Wbp4	AW545037|BB101031|FBP21	WW domain binding protein 4	protein-coding	0.145000	0.771144	
mm_77369.1	chr8	119810239	119810439	-	1	NA	NA	NA	30240	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.030000	0.562189	
mm_36745.1	chr4	100042002	100042202	-	1	NA	NA	NA	-53689	NM_013845	26563	Mm.57252	NM_013845	ENSMUSG00000035305	Ror1	2810404D04Rik|Ntrkr1	receptor tyrosine kinase-like orphan receptor 1	protein-coding	0.025000	0.482587	
mm_172466.1	chr7	42853365	42853565	+	1	NA	NA	NA	13769	NR_046214	100039706	Mm.260936	NR_046214	ENSMUSG00000092225	Gm2381	-	zinc finger protein 936 pseudogene	pseudo	0.015000	0.472637	
mm_9440.1	chr1	172558055	172558255	-	1	NA	NA	NA	-1751	NR_027644	240916	Mm.71940	NM_177723	ENSMUSG00000049598	Vsig8	A030011M19|EG240916	V-set and immunoglobulin domain containing 8	protein-coding	0.020000	0.512438	
mm_41275.1	chr5	89441108	89441308	+	1	NA	NA	NA	16690	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.015000	0.452736	
mm_34045.1	chr4	138217062	138217262	+	1	NA	NA	NA	35	NM_001122897	15441	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	0.120000	0.711443	
mm_74061.1	chr8	122376568	122376768	+	1	NA	NA	NA	52	NM_001029993	76014	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	0.125000	0.691542	
mm_26059.1	chr3	135826051	135826251	+	1	NA	NA	NA	361	NM_001135150	67547	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.045000	0.597015	
mm_158413.1	chrX	137038187	137038387	-	1	NA	NA	NA	15	NM_001082412	67062	Mm.276518	NM_001082412	ENSMUSG00000044348	Slc25a53	2310046F18Rik|2810402A17Rik|AI448995|AI841128|Mcart6	solute carrier family 25, member 53	protein-coding	0.085000	0.646766	
mm_29784.1	chr3	127498985	127499185	-	1	NA	NA	NA	30	NM_001327938	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.095000	0.666667	
mm_45942.1	chr5	90244260	90244460	-	1	NA	NA	NA	-20364	NM_001163456	231430	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	0.025000	0.437811	
mm_64587.1	chr7	3155450	3155650	-	1	NA	NA	NA	13653	NM_001004153	245128	Mm.268551	NM_001004153	ENSMUSG00000054753	AU018091	-	expressed sequence AU018091	protein-coding	0.000000	0.333333	
mm_95079.1	chr11	32682850	32683050	+	1	NA	NA	NA	40395	NM_001271347	103583	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.005000	0.298507	
mm_125927.1	chr15	76246724	76246924	+	1	NA	NA	NA	17	NM_023168	66168	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	0.110000	0.731343	
mm_136254.1	chr16	90961853	90962053	-	1	NA	NA	NA	-27104	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.005000	0.452736	
mm_159789.1	chr5	107597768	107597968	-	1	NA	NA	NA	20	NM_001161738	170823	Mm.41417	NM_133248	ENSMUSG00000029276	Glmn	9330160J16Rik|AW227515|Fap48|Fap68	glomulin, FKBP associated protein	protein-coding	0.075000	0.626866	
mm_125405.1	chr15	41612482	41612682	+	1	NA	NA	NA	165100	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.015000	0.358209	
mm_105554.1	chr11	106411650	106411850	-	1	NA	NA	NA	-28969	NM_010494	15896	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.030000	0.532338	
mm_17569.1	chr2	30286231	30286431	-	1	NA	NA	NA	23	NM_177648	227697	Mm.26690	NM_177648	ENSMUSG00000075419	Dolk	BC026973|Tmem15|mKIAA1094	dolichol kinase	protein-coding	0.090000	0.686567	
mm_95237.1	chr11	44617258	44617458	+	1	NA	NA	NA	-742	NM_001290711	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.010000	0.527363	
mm_33784.1	chr4	134915004	134915204	+	1	NA	NA	NA	-188	NM_027935	71817	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0.060000	0.611940	
mm_158393.1	chrX	136733102	136733302	-	1	NA	NA	NA	7953	NM_001168225	56397	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	0.010000	0.398010	-7(TTTTTTATGGTG,+,0.00)
mm_93352.1	chr10	102490333	102490533	-	1	NA	NA	NA	-15	NM_024435	67405	Mm.64201	NM_024435	ENSMUSG00000019890	Nts	5033428E16Rik|NMN-125|NN|NT|NT/N|NTS1	neurotensin	protein-coding	0.005000	0.527363	
mm_11404.1	chr2	31510835	31511035	+	1	NA	NA	NA	40627	NR_002687	432466	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.000000	0.437811	
mm_132726.1	chr16	43618951	43619151	+	1	NA	NA	NA	-21604	NR_030576	100124467		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.000000	0.393035	-4(GCCTCTAAATAC,-,0.00)
mm_148522.1	chr19	4302433	4302633	+	1	NA	NA	NA	3689	NM_130863	110355	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.015000	0.621891	
mm_63052.1	chr7	121898248	121898448	+	1	NA	NA	NA	33310	NR_073548	20277	Mm.7709	NM_011325	ENSMUSG00000030873	Scnn1b	-	sodium channel, nonvoltage-gated 1 beta	protein-coding	0.020000	0.502488	
mm_122780.1	chr14	54410072	54410272	-	1	NA	NA	NA	-700	NM_001253680	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.015000	0.542289	
mm_114351.1	chr13	60939472	60939672	+	1	NA	NA	NA	2363	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding	0.010000	0.442786	
mm_105670.1	chr11	107461965	107462165	-	1	NA	NA	NA	8655	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.025000	0.393035	
mm_24711.1	chr3	95217976	95218176	+	1	NA	NA	NA	-134	NM_029885	213054	Mm.224820	NM_029885	ENSMUSG00000038766	Gabpb2	1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1	GA repeat binding protein, beta 2	protein-coding	0.065000	0.582090	
mm_59682.1	chr7	28436298	28436498	+	1	NA	NA	NA	-207	NM_175021	233033	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0.095000	0.706468	
mm_30791.1	chr4	19650212	19650412	+	1	NA	NA	NA	58692	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.015000	0.492537	-82(GGGTCTATGAGG,-,0.00)
mm_147273.1	chr18	38929371	38929571	-	1	NA	NA	NA	-10772	NM_010197	14164	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0.010000	0.542289	
mm_3199.1	chr1	135818618	135818818	+	1	NA	NA	NA	120	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding	0.130000	0.751244	
mm_57761.1	chr6	129233085	129233285	-	1	NA	NA	NA	4860	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.015000	0.363184	-32(CCTTATAAAGAA,+,0.00)
mm_55601.1	chr6	71823611	71823811	-	1	NA	NA	NA	73	NM_025430	66223	Mm.28579	NM_025430	ENSMUSG00000052962	Mrpl35	1110066C01Rik	mitochondrial ribosomal protein L35	protein-coding	0.050000	0.527363	
mm_151608.1	chr19	3744283	3744483	-	1	NA	NA	NA	-23038	NM_001167889	225888	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0.025000	0.552239	-84(CCCTTTAAATCC,+,0.00)
mm_168401.1	chr11	29547800	29548000	-	1	NA	NA	NA	-50	NM_028504	73324	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	0.115000	0.641791	
mm_96023.1	chr11	59548416	59548616	+	1	NA	NA	NA	5830	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.020000	0.562189	
mm_41329.1	chr5	90490637	90490837	+	1	NA	NA	NA	23	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.030000	0.482587	-33(GGATATAAAAGG,-,0.00)
mm_24204.1	chr3	88621016	88621216	+	1	NA	NA	NA	10	NM_008487	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.100000	0.716418	
mm_168769.1	chr12	14455850	14456050	-	1	NA	NA	NA	194416	NR_045003	791361	Mm.217963	NR_045003		Gm16497	ENSMUSG00000066623	predicted gene 16497	ncRNA	0.035000	0.457711	
mm_56044.1	chr6	86737148	86737348	-	1	NA	NA	NA	-3870	NM_011818	23885	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	0.010000	0.437811	
mm_34679.1	chr4	150996985	150997185	+	1	NA	NA	NA	-12	NM_011910	24111	Mm.89984	NM_011910	ENSMUSG00000028963	Uts2	UII|Ucn2|prepro-UII	urotensin 2	protein-coding	0.035000	0.497512	
mm_800.1	chr1	45347678	45347878	+	1	NA	NA	NA	36240	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.010000	0.462687	
mm_51813.1	chr6	88902222	88902422	+	1	NA	NA	NA	71	NM_011906	24100	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.085000	0.641791	
mm_55743.1	chr6	77758333	77758533	-	1	NA	NA	NA	221234	NM_145732	12386	Mm.34637	NM_009819	ENSMUSG00000063063	Ctnna2	AI481747|Catna|Catna2|cdf|chp	catenin (cadherin associated protein), alpha 2	protein-coding	0.010000	0.477612	
mm_12551.1	chr2	72406184	72406384	+	1	NA	NA	NA	-69935	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.005000	0.437811	
mm_58217.1	chr6	144209265	144209465	-	1	NA	NA	NA	203	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.015000	0.462687	
mm_12804.1	chr2	80292389	80292589	+	1	NA	NA	NA	19	NM_177256	320769	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	0.025000	0.482587	
mm_16556.1	chr2	181846541	181846741	+	1	NA	NA	NA	8787	NM_001291211	245867	Mm.491085	NM_153594	ENSMUSG00000027589	Pcmtd2	5330414D10Rik|AI314201	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding	0.005000	0.427861	
mm_108235.1	chr12	77239257	77239457	+	1	NA	NA	NA	618	NR_045554	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.115000	0.746269	
mm_109160.1	chr12	108179816	108180016	+	1	NA	NA	NA	178	NM_009832	12454	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	0.070000	0.636816	
mm_54998.1	chr6	48833907	48834107	-	1	NA	NA	NA	6981	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.035000	0.597015	
mm_118869.1	chr14	25855523	25855723	+	1	NA	NA	NA	13468	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.025000	0.482587	
mm_66855.1	chr7	52005732	52005932	-	1	NA	NA	NA	-118	NR_027704	75744	Mm.386823	NM_001160345	ENSMUSG00000074093	Svip	1700006C13Rik|6620401M08Rik	small VCP/p97-interacting protein	protein-coding	0.075000	0.721393	
mm_91886.1	chr10	59899566	59899766	-	1	NA	NA	NA	20075	NM_019965	56709	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.050000	0.691542	
mm_119825.1	chr14	54254086	54254286	+	1	NA	NA	NA	57	NM_001205181	105501	Mm.28771	NM_134076	ENSMUSG00000040997	Abhd4	1110035H23Rik|AI429574|Abh4	abhydrolase domain containing 4	protein-coding	0.050000	0.557214	
mm_17168.1	chr2	25291685	25291885	-	1	NA	NA	NA	565	NM_001242940	320354	Mm.445875	NM_001242940		Grin1os	E130003G02Rik	glutamate receptor, ionotropic, NMDA1 (zeta 1), opposite strand	protein-coding	0.030000	0.691542	
mm_71921.1	chr8	70158660	70158860	+	1	NA	NA	NA	5999	NM_001045484	17259	Mm.432505	NM_008578	ENSMUSG00000079033	Mef2b	AI451606	myocyte enhancer factor 2B	protein-coding	0.060000	0.641791	
mm_70838.1	chr8	23314590	23314790	+	1	NA	NA	NA	-57610	NM_001042484	57437	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	0.020000	0.432836	-54(GTTTATAAAAAC,-,0.00)
mm_2340.1	chr1	92855876	92856076	+	1	NA	NA	NA	5598	NR_029559	387167		NR_029559	ENSMUSG00000065470	Mir149	Mirn149|mir-149|mmu-mir-149	microRNA 149	ncRNA	0.045000	0.621891	
mm_163329.1	chr12	8480462	8480662	-	1	NA	NA	NA	19423	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.010000	0.507463	
mm_56117.1	chr6	87532024	87532224	-	1	NA	NA	NA	1135	NM_001037727	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.015000	0.378109	
mm_91639.1	chr10	42275538	42275738	-	1	NA	NA	NA	1104	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.130000	0.706468	
mm_113945.1	chr13	49818492	49818692	+	1	NA	NA	NA	136462	NM_172015	105148	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	0.005000	0.432836	
mm_153806.1	chr19	46045108	46045308	-	1	NA	NA	NA	3	NM_001113408	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.130000	0.671642	
mm_21590.1	chr2	164237408	164237608	-	1	NA	NA	NA	833	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.442786	
mm_85565.1	chr9	106891868	106892068	-	1	NA	NA	NA	-30	NM_029103	74840	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	0.110000	0.681592	
mm_133198.1	chr16	73011514	73011714	+	1	NA	NA	NA	348465	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.015000	0.462687	
mm_139640.1	chr17	57377341	57377541	+	1	NA	NA	NA	18755	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.368159	
mm_8239.1	chr1	138484796	138484996	-	1	NA	NA	NA	134861	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.000000	0.358209	
mm_74734.1	chr8	18741272	18741472	-	1	NA	NA	NA	190	NM_007426	11601	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	0.030000	0.547264	
mm_108916.1	chr12	100208132	100208332	+	1	NA	NA	NA	8088	NM_001313934	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.015000	0.507463	
mm_134406.1	chr16	17655467	17655667	-	1	NA	NA	NA	9097	NM_001166164	72315	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.020000	0.592040	
mm_9409.1	chr1	172274627	172274827	-	1	NA	NA	NA	-16303	NM_013734	27222	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	0.025000	0.572139	-46(CCTTTTATGCTC,+,0.00)
mm_147512.1	chr18	52488244	52488444	-	1	NA	NA	NA	22651	NM_026040	67222	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	0.025000	0.527363	
mm_21446.1	chr2	160366965	160367165	-	1	NA	NA	NA	0	NM_010658	16658	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.110000	0.711443	
mm_167226.1	chr8	12756712	12756912	-	1	NA	NA	NA	-204	NM_015804	50770	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	0.065000	0.726368	
mm_130252.1	chr15	96641525	96641725	-	1	NA	NA	NA	337	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.050000	0.626866	
mm_155820.1	chrX	100605442	100605642	+	1	NA	NA	NA	45	NM_133205	170735	Mm.95518	NM_133205	ENSMUSG00000060890	Arr3	Arr4|Car|Carfl|Carr	arrestin 3, retinal	protein-coding	0.005000	0.482587	-31(GGATATAAGAGG,-,0.00)
mm_121846.1	chr14	20631262	20631462	-	1	NA	NA	NA	-13008	NM_030180	78787	Mm.301173	NM_030180	ENSMUSG00000034235	Usp54	4930429G18Rik|AI115571|C030002J06Rik	ubiquitin specific peptidase 54	protein-coding	0.005000	0.462687	
mm_11979.1	chr2	55292263	55292463	+	1	NA	NA	NA	-143607	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.015000	0.482587	
mm_172770.1	chr8	94179004	94179204	+	1	NA	NA	NA	15	NM_013602	17748	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.100000	0.666667	
mm_61380.1	chr7	70951218	70951418	+	1	NA	NA	NA	-584572	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.015000	0.447761	
mm_102372.1	chr11	58611996	58612196	-	1	NA	NA	NA	1396	NM_144544	78354	Mm.58038	NM_144544	ENSMUSG00000037145	2210407C18Rik	Ep1	RIKEN cDNA 2210407C18 gene	protein-coding	0.010000	0.437811	
mm_58619.1	chr7	5068915	5069115	+	1	NA	NA	NA	6872	NM_001205231	22185	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.005000	0.497512	
mm_94854.1	chr11	23894700	23894900	+	1	NA	NA	NA	470	NM_172555	216578	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0.090000	0.686567	
mm_163011.1	chr11	44620728	44620928	+	1	NA	NA	NA	2728	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.015000	0.567164	
mm_50465.1	chr6	48974847	48975047	+	1	NA	NA	NA	-196	NM_001029987	243376	Mm.244112	NM_001029987	ENSMUSG00000068536	Doxl2	-	diamine oxidase-like protein 2	protein-coding	0.005000	0.472637	-35(ATGTATAAAAGG,-,0.00)
mm_78190.1	chr9	21330107	21330307	+	1	NA	NA	NA	-7621	NM_152808	68682	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0.005000	0.497512	
mm_52609.1	chr6	117173614	117173814	+	1	NA	NA	NA	5179	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.040000	0.587065	
mm_141111.1	chr17	26069413	26069613	-	1	NA	NA	NA	-336	NM_001162869	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.110000	0.676617	
mm_93515.1	chr10	115251336	115251536	-	1	NA	NA	NA	57	NM_025706	66687	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0.100000	0.651741	
mm_70869.1	chr8	25017213	25017413	+	1	NA	NA	NA	102	NM_027194	69742	Mm.28626	NM_027194	ENSMUSG00000031556	Tm2d2	2410018G23Rik|Blp1	TM2 domain containing 2	protein-coding	0.090000	0.671642	
mm_18485.1	chr2	62601375	62601575	-	1	NA	NA	NA	-27454	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.035000	0.452736	
mm_101924.1	chr11	50202332	50202532	-	1	NA	NA	NA	8388	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.005000	0.522388	
mm_17910.1	chr2	35336876	35337076	-	1	NA	NA	NA	33	NM_013515	13830	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.060000	0.597015	
mm_48225.1	chr5	137645608	137645808	-	1	NA	NA	NA	6	NM_010571	16369	Mm.24486	NM_010571	ENSMUSG00000047182	Irs3	AA408304	insulin receptor substrate 3	protein-coding	0.020000	0.597015	
mm_84076.1	chr9	58201868	58202068	-	1	NA	NA	NA	-169	NM_001161540	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.085000	0.527363	
mm_15341.1	chr2	156007977	156008177	+	1	NA	NA	NA	-48	NM_025516	66366	Mm.141276	NM_025516	ENSMUSG00000005881	Ergic3	2310015B14Rik|AV318804|CGI-54|D2Ucla1|NY-BR-84|Sdbcag84	ERGIC and golgi 3	protein-coding	0.075000	0.691542	
mm_40019.1	chr5	33287961	33288161	+	1	NA	NA	NA	-13057	NM_001198860	13016	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	0.010000	0.422886	
mm_54837.1	chr6	42586218	42586418	-	1	NA	NA	NA	11054	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.010000	0.452736	
mm_40838.1	chr5	73256683	73256883	+	1	NA	NA	NA	-165	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.070000	0.606965	
mm_52248.1	chr6	106769083	106769283	+	1	NA	NA	NA	45	NM_001242358	70047	Mm.196332	NM_027296	ENSMUSG00000013736	Trnt1	2410043H24Rik|2610044E04Rik|9830143O18Rik|AA408384|C76540|CGI-47|mt-Trat	tRNA nucleotidyl transferase, CCA-adding, 1	protein-coding	0.110000	0.651741	
mm_111934.1	chr12	108893107	108893307	-	1	NA	NA	NA	4	NM_011710	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.010000	0.442786	-35(GAGTATTAAAGA,-,0.00)
mm_15853.1	chr2	164777662	164777862	+	1	NA	NA	NA	1972	NM_009394	21925	Mm.1716	NM_009394	ENSMUSG00000017300	Tnnc2	Tncs	troponin C2, fast	protein-coding	0.050000	0.567164	
mm_4925.1	chr1	190992715	190992915	+	1	NA	NA	NA	-13519	NR_027352	226841	Mm.22856	NM_144879	ENSMUSG00000037568	Vash2	B130052G07Rik	vasohibin 2	protein-coding	0.035000	0.537313	
mm_7661.1	chr1	128417141	128417341	-	1	NA	NA	NA	175	NM_177445	226414	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	0.070000	0.646766	
mm_110885.1	chr12	75400129	75400329	-	1	NA	NA	NA	16552	NM_175644	217674	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	0.010000	0.512438	
mm_95815.1	chr11	55136905	55137105	+	1	NA	NA	NA	14701	NM_172258	215332	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0.015000	0.497512	
mm_120673.1	chr14	70554426	70554626	+	1	NA	NA	NA	470	NM_021877	15460	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	0.100000	0.711443	
mm_66047.1	chr7	30671528	30671728	-	1	NA	NA	NA	-23	NR_027848	74927	Mm.87326	NM_183108	ENSMUSG00000049761	Pmis2	1700071L20Rik|4930479M11Rik	Pmis2, sperm specific protein	ncRNA	0.030000	0.507463	-91(CTGTCTAAAAAC,-,0.00)
mm_155113.1	chrX	48519449	48519649	+	1	NA	NA	NA	264	NM_011228	19337	Mm.2015	NM_011228	ENSMUSG00000031104	Rab33a	Rabs10	RAB33A, member RAS oncogene family	protein-coding	0.070000	0.636816	
mm_96897.1	chr11	70438586	70438786	+	1	NA	NA	NA	431	NR_106064	102465670		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.020000	0.592040	
mm_158134.1	chrX	103186413	103186613	-	1	NA	NA	NA	151	NM_008671	17954	Mm.388694	NM_008671	ENSMUSG00000082229	Nap1l2	Bpx	nucleosome assembly protein 1-like 2	protein-coding	0.045000	0.611940	
mm_34773.1	chr4	153957190	153957390	+	1	NA	NA	NA	53	NM_001163019	97159	Mm.7066	NM_175287	ENSMUSG00000047613	A430005L14Rik	C79672	RIKEN cDNA A430005L14 gene	protein-coding	0.130000	0.731343	
mm_86639.1	chr10	14088650	14088850	+	1	NA	NA	NA	122371	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.005000	0.368159	
mm_42872.1	chr5	122240641	122240841	+	1	NA	NA	NA	23719	NR_104441	654470	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.035000	0.597015	
mm_87804.1	chr10	60300490	60300690	+	1	NA	NA	NA	16129	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.045000	0.592040	
mm_90026.1	chr10	115408768	115408968	+	1	NA	NA	NA	23909	NM_001033261	216345	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0.015000	0.348259	
mm_164451.1	chr16	50513441	50513641	-	1	NA	NA	NA	-12704	NR_040380	619312	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.015000	0.348259	
mm_66901.1	chr7	59977512	59977712	-	1	NA	NA	NA	1244	NR_028529	100217429		NR_028529		Snord64	MBII-13	small nucleolar RNA, C/D box 64	snoRNA	0.005000	0.333333	23(GGGCATAAAGAG,-,0.00)
mm_2992.1	chr1	133172850	133173050	+	1	NA	NA	NA	41784	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.005000	0.532338	
mm_20893.1	chr2	148872957	148873157	-	1	NA	NA	NA	2455	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.010000	0.472637	
mm_40971.1	chr5	77001414	77001614	+	1	NA	NA	NA	-2541	NM_206935	384185	Mm.451858	NM_206935	ENSMUSG00000063820	Arl9	1700110A09Rik	ADP-ribosylation factor-like 9	protein-coding	0.065000	0.621891	
mm_156684.1	chrX	159372133	159372333	+	1	NA	NA	NA	38	NM_025437	66235	Mm.294623	NM_025437	ENSMUSG00000067194	Eif1ax	1500010B24Rik|AI426898|Eif1ay	eukaryotic translation initiation factor 1A, X-linked	protein-coding	0.130000	0.751244	
mm_119468.1	chr14	47291860	47292060	+	1	NA	NA	NA	-6354	NM_178684	218975	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	0.005000	0.417910	
mm_97190.1	chr11	75572718	75572918	+	1	NA	NA	NA	-15261	NM_008850	18738	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.025000	0.552239	
mm_115939.1	chr13	23622456	23622656	-	1	NA	NA	NA	2	NM_015787	50709	Mm.170587	NM_015787	ENSMUSG00000051627	Hist1h1e	H1-4|H1.4|H1e|H1f4|H1s-4|H1var2	histone cluster 1, H1e	protein-coding	0.130000	0.716418	-34(CCCTATATAAAC,-,0.00)
mm_16341.1	chr2	174343146	174343346	+	1	NA	NA	NA	13157	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.020000	0.522388	
mm_156589.1	chrX	152178958	152179158	+	1	NA	NA	NA	49	NM_001005475	245666	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	0.015000	0.621891	
mm_102274.1	chr11	55395369	55395569	-	1	NA	NA	NA	24611	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.010000	0.412935	
mm_112072.1	chr12	112571125	112571325	-	1	NA	NA	NA	-17559	NM_198411	70435	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.015000	0.477612	-99(GCTTATAAAAGC,+,0.00),-99(GCTTATAAAAGC,-,0.00),66(CCTTTTATAGAT,+,0.00)
mm_161838.1	chr17	86040312	86040512	-	1	NA	NA	NA	104763	NM_030133	78586	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	0.020000	0.537313	1(GTGCATATAAAG,-,0.00),3(GCATATAAAGCT,+,0.00)
mm_104293.1	chr11	90389549	90389749	-	1	NA	NA	NA	1268	NM_172563	217082	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0.055000	0.636816	
mm_159364.1	chr3	88287079	88287279	-	1	NA	NA	NA	9659	NM_029801	76927	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	0.020000	0.442786	
mm_165643.1	chr3	79795425	79795625	+	1	NA	NA	NA	47137	NM_027495	70652	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.005000	0.447761	
mm_70309.1	chr8	4226813	4227013	+	1	NA	NA	NA	86	NM_028175	72267	Mm.25479	NM_028175	ENSMUSG00000046589	Lrrc8e	1810049O03Rik|C87354	leucine rich repeat containing 8 family, member E	protein-coding	0.075000	0.676617	
mm_122082.1	chr14	30609061	30609261	-	1	NA	NA	NA	1149	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.055000	0.572139	
mm_72293.1	chr8	75213346	75213546	+	1	NA	NA	NA	-498	NM_029182	75141	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.125000	0.716418	
mm_159561.1	chr4	108723748	108723948	-	1	NA	NA	NA	28	NM_183300	230597	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	0.000000	0.368159	
mm_60332.1	chr7	44310128	44310328	+	1	NA	NA	NA	-36	NM_001034115	243961	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3/ankyrin domain gene 1	protein-coding	0.055000	0.641791	
mm_107459.1	chr12	37241544	37241744	+	1	NA	NA	NA	5	NM_178767	319660	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	0.010000	0.353234	-80(CCTTTTAGAGAA,+,0.00)
mm_62215.1	chr7	98104863	98105063	+	1	NA	NA	NA	4285	NM_001256082	17921	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.010000	0.517413	
mm_134402.1	chr16	17576076	17576276	-	1	NA	NA	NA	495	NM_144852	224022	Mm.298878	NM_144852	ENSMUSG00000022756	Slc7a4	AI853530	solute carrier family 7 (cationic amino acid transporter, y+ system), member 4	protein-coding	0.025000	0.557214	
mm_27772.1	chr3	72962035	72962235	-	1	NA	NA	NA	4731	NM_001081137	69983	Mm.261054	NM_001081137	ENSMUSG00000027790	Sis	2010204N08Rik|SI|Si-s	sucrase isomaltase (alpha-glucosidase)	protein-coding	0.000000	0.263682	-77(TACCTTTAAAGC,-,0.00),-75(CCTTTAAAGCTA,+,0.00)
mm_64234.1	chr7	141696548	141696748	+	1	NA	NA	NA	6308	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.050000	0.567164	
mm_168594.1	chr1	173942080	173942280	-	1	NA	NA	NA	312	NM_001302649	15950	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Mndal	interferon activated gene 203	protein-coding	0.000000	0.467662	-37(CCTTTTATATAT,+,0.00)
mm_80181.1	chr9	72289543	72289743	+	1	NA	NA	NA	14755	NM_001311105	235469	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	0.035000	0.532338	
mm_73907.1	chr8	119466341	119466541	+	1	NA	NA	NA	19722	NM_054095	117148	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	0.040000	0.626866	
mm_36636.1	chr4	93335331	93335531	-	1	NA	NA	NA	80	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.175000	0.810945	
mm_67085.1	chr7	68282626	68282826	-	1	NA	NA	NA	-6132	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.020000	0.452736	
mm_137669.1	chr17	28747507	28747707	+	1	NA	NA	NA	-21710	NM_011950	26415	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.025000	0.502488	
mm_44606.1	chr5	25269973	25270173	-	1	NA	NA	NA	47180	NM_144908	231050	Mm.21814	NM_144908	ENSMUSG00000038072	Galnt11	A430075I06Rik|AI648252|E430002F06Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	protein-coding	0.015000	0.393035	-30(GATTTTTAAAGG,-,0.00)
mm_13097.1	chr2	91257247	91257447	+	1	NA	NA	NA	18	NM_028733	80708	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	0.035000	0.587065	
mm_24593.1	chr3	93445100	93445300	+	1	NA	NA	NA	2870	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.045000	0.537313	
mm_70292.1	chr8	3665679	3665879	+	1	NA	NA	NA	17	NM_026985	69189	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0.025000	0.537313	
mm_89932.1	chr10	111244208	111244408	+	1	NA	NA	NA	-54371	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.000000	0.358209	
mm_16600.1	chr2	5012641	5012841	-	1	NA	NA	NA	50	NM_027290	70024	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	0.080000	0.592040	
mm_108228.1	chr12	77238716	77238916	+	1	NA	NA	NA	77	NR_045554	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.185000	0.820896	
mm_117272.1	chr13	65052295	65052495	-	1	NA	NA	NA	19337	NM_001083890	238683	Mm.295543	NM_001083890	ENSMUSG00000074849	Spata31d1c	4932441B19Rik|Fam75d1c	spermatogenesis associated 31 subfamily D, member 1C	protein-coding	0.020000	0.502488	
mm_73720.1	chr8	112011360	112011560	+	1	NA	NA	NA	101	NM_020584	57321	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	0.085000	0.631841	
mm_57629.1	chr6	128300342	128300542	-	1	NA	NA	NA	371	NM_001080979	21679	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	0.115000	0.731343	
mm_7773.1	chr1	131245076	131245276	-	1	NA	NA	NA	2	NM_018750	54354	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.125000	0.741294	-35(GCCCTTTAAAAG,-,0.00),-34(CCCTTTAAAAGC,+,0.00),-34(CCCTTTAAAAGC,-,0.00),-33(CCTTTAAAAGCG,+,0.00)
mm_9779.1	chr1	181174461	181174661	-	1	NA	NA	NA	23630	NM_030131	98417	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	0.015000	0.393035	
mm_46568.1	chr5	107176093	107176293	-	1	NA	NA	NA	113402	NM_011578	21814	Mm.200775	NM_011578	ENSMUSG00000029287	Tgfbr3	1110036H20Rik|AU015626|AW215636|TBRIII	transforming growth factor, beta receptor III	protein-coding	0.000000	0.378109	
mm_70440.1	chr8	11727724	11727924	+	1	NA	NA	NA	-281	NM_001113517	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.150000	0.751244	
mm_107382.1	chr12	33146900	33147100	+	1	NA	NA	NA	586	NR_015602	320046	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	0.035000	0.557214	
mm_97915.1	chr11	83525868	83526068	+	1	NA	NA	NA	-3869	NM_001045543	629303	Mm.390417	NM_001045543	ENSMUSG00000018925	Heatr9	Gm11435|OTTMUSG00000000990	HEAT repeat containing 9	protein-coding	0.015000	0.502488	
mm_53437.1	chr6	134144560	134144760	+	1	NA	NA	NA	108960	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.015000	0.457711	
mm_47462.1	chr5	123666620	123666820	-	1	NA	NA	NA	17641	NM_019765	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.005000	0.482587	
mm_58892.1	chr7	17093580	17093780	+	1	NA	NA	NA	19640	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.030000	0.532338	
mm_118456.1	chr14	8610249	8610449	+	1	NA	NA	NA	55941	NM_028934	74430	Mm.271901	NM_028934	ENSMUSG00000021747	4930452B06Rik	4933406L09Rik|AI854000	RIKEN cDNA 4930452B06 gene	protein-coding	0.010000	0.522388	
mm_128449.1	chr15	50772085	50772285	-	1	NA	NA	NA	116864	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.010000	0.457711	
mm_99926.1	chr11	110972937	110973137	+	1	NA	NA	NA	5004	NM_001252207	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.000000	0.323383	11(TTCCTTATAAGC,-,0.00),13(CCTTATAAGCTC,+,0.00)
mm_94152.1	chr10	128744000	128744200	-	1	NA	NA	NA	-44	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.090000	0.701493	
mm_116159.1	chr13	30551629	30551829	-	1	NA	NA	NA	-6413	NM_025710	66694	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0.030000	0.422886	
mm_32696.1	chr4	116053480	116053680	+	1	NA	NA	NA	296	NM_028142	72181	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	0.040000	0.542289	
mm_137134.1	chr17	23600808	23601008	+	1	NA	NA	NA	82	NM_001289482	332221	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	0.025000	0.552239	
mm_55540.1	chr6	70791925	70792125	-	1	NA	NA	NA	150	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.125000	0.761194	
mm_119128.1	chr14	31138267	31138467	+	1	NA	NA	NA	3514	NM_027289	70021	Mm.261681	NM_027289	ENSMUSG00000071547	Nt5dc2	2510015F01Rik	5'-nucleotidase domain containing 2	protein-coding	0.060000	0.686567	
mm_171653.1	chr4	40723736	40723936	+	1	NA	NA	NA	906	NM_001164672	15502	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0.015000	0.447761	
mm_48290.1	chr5	138187340	138187540	-	1	NA	NA	NA	-95	NM_178612	66455	Mm.24592	NM_178612	ENSMUSG00000036968	Cnpy4	2610019P18Rik	canopy FGF signaling regulator 4	protein-coding	0.035000	0.422886	-71(AGCTTTAAAAAA,-,0.00)
mm_69552.1	chr7	135697916	135698116	-	1	NA	NA	NA	18363	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.005000	0.507463	
mm_37843.1	chr4	132144425	132144625	-	1	NA	NA	NA	-39	NM_013622	18386	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	0.170000	0.796020	
mm_101322.1	chr11	22859599	22859799	-	1	NA	NA	NA	36	NM_016888	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.155000	0.766169	
mm_142663.1	chr17	47701891	47702091	-	1	NA	NA	NA	5	NR_045912	100126242	Mm.392746	NR_045912	ENSMUSG00000086930	Frs3os	4930417B13Rik|Gm14873|OTTMUSG00000018358	fibroblast growth factor receptor substrate 3, opposite strand	ncRNA	0.015000	0.537313	
mm_45779.1	chr5	87140241	87140441	-	1	NA	NA	NA	-1	NM_009467	22238	Mm.291575	NM_009467	ENSMUSG00000054630	Ugt2b5	AI118071|M-1|Udpgt-3|Udpgt2b5|Ugt2b17	UDP glucuronosyltransferase 2 family, polypeptide B5	protein-coding	0.000000	0.412935	
mm_8489.1	chr1	153790707	153790907	-	1	NA	NA	NA	41381	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.005000	0.422886	
mm_34402.1	chr4	145220540	145220740	+	1	NA	NA	NA	-25635	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.005000	0.542289	
mm_120848.1	chr14	75206103	75206303	+	1	NA	NA	NA	-36084	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.010000	0.497512	
mm_13950.1	chr2	121300538	121300738	+	1	NA	NA	NA	5184	NM_001173506	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.010000	0.507463	
mm_2200.1	chr1	89481964	89482164	+	1	NA	NA	NA	27253	NM_001037136	347722	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.015000	0.422886	
mm_77877.1	chr9	6237934	6238134	+	1	NA	NA	NA	28513	NM_027942	71829	Mm.141452	NM_027942	ENSMUSG00000047619	Ddi1	1700011N24Rik	DNA-damage inducible 1	protein-coding	0.010000	0.472637	
mm_121838.1	chr14	20546384	20546584	-	1	NA	NA	NA	89	NM_001310426	19056	Mm.274432	NM_008914	ENSMUSG00000021816	Ppp3cb	1110063J16Rik|Calnb|CnAbeta|Cnab	protein phosphatase 3, catalytic subunit, beta isoform	protein-coding	0.135000	0.800995	
mm_168676.1	chr11	94301420	94301620	-	1	NA	NA	NA	20391	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.000000	0.373134	-69(CTTTTTATAGGC,+,0.00)
mm_90459.1	chr10	127739517	127739717	+	1	NA	NA	NA	79	NM_198035	320080	Mm.27258	NM_198035	ENSMUSG00000044617	Zbtb39	7030401O21Rik|mKIAA0352	zinc finger and BTB domain containing 39	protein-coding	0.170000	0.791045	
mm_44096.1	chr5	149264983	149265183	+	1	NA	NA	NA	79	NM_009663	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.020000	0.587065	
mm_134994.1	chr16	32163420	32163620	-	1	NA	NA	NA	1956	NM_146069	224109	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.010000	0.562189	
mm_25356.1	chr3	107090747	107090947	+	1	NA	NA	NA	-10720	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.010000	0.477612	0(GCACATAAAAGA,-,0.00)
mm_108880.1	chr12	99964433	99964633	+	1	NA	NA	NA	34	NM_001164427	217826	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.055000	0.631841	
mm_84938.1	chr9	82974200	82974400	-	1	NA	NA	NA	1189	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.130000	0.691542	
mm_79963.1	chr9	66350390	66350590	+	1	NA	NA	NA	40	NM_145617	235439	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.140000	0.681592	
mm_107179.1	chr12	24974831	24975031	+	1	NA	NA	NA	-1	NM_001081378	77480	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	0.055000	0.636816	
mm_84322.1	chr9	63941681	63941881	-	1	NA	NA	NA	80278	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.020000	0.611940	
mm_105961.1	chr11	115462714	115462914	-	1	NA	NA	NA	341	NM_001080934	217316	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	0.030000	0.582090	
mm_45378.1	chr5	66081710	66081910	-	1	NA	NA	NA	16369	NM_139065	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.030000	0.517413	-27(TCTTTTAGGCTC,+,0.00)
mm_69443.1	chr7	132988140	132988340	-	1	NA	NA	NA	27007	NM_001170744	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.030000	0.582090	
mm_12125.1	chr2	61634013	61634213	+	1	NA	NA	NA	41016	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.005000	0.472637	
mm_118726.1	chr14	22224513	22224713	+	1	NA	NA	NA	204901	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.462687	
mm_129499.1	chr15	78851292	78851492	-	1	NA	NA	NA	4137	NM_025622	107753	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	0.020000	0.512438	
mm_44016.1	chr5	147304845	147305045	+	1	NA	NA	NA	2304	NM_007673	12591	Mm.20358	NM_007673	ENSMUSG00000029646	Cdx2	Cdx-2	caudal type homeobox 2	protein-coding	0.045000	0.572139	-8(GGCCCTAAAAGA,-,0.00)
mm_154245.1	chr19	60766390	60766590	-	1	NA	NA	NA	7895	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.025000	0.537313	
mm_152615.1	chr19	11966079	11966279	-	1	NA	NA	NA	335	NM_001033174	76303	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.140000	0.751244	
mm_53660.1	chr6	141406685	141406885	+	1	NA	NA	NA	66232	NR_033555	100093700	Mm.483778	NR_033555	ENSMUSG00000107456	Gm10400	ENSMUSG00000072690	predicted gene 10400	ncRNA	0.005000	0.407960	
mm_143543.1	chr17	74016941	74017141	-	1	NA	NA	NA	30875	NM_053188	94224	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.005000	0.412935	
mm_15879.1	chr2	164837286	164837486	+	1	NA	NA	NA	3613	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.030000	0.611940	
mm_41983.1	chr5	107597614	107597814	+	1	NA	NA	NA	18	NM_001289569	231571	Mm.482420	NM_144911	ENSMUSG00000033773	Rpap2	AW060207	RNA polymerase II associated protein 2	protein-coding	0.105000	0.761194	
mm_122026.1	chr14	29018219	29018419	-	1	NA	NA	NA	111	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding	0.010000	0.432836	-64(CTCCATAAGAGG,-,0.00)
mm_41773.1	chr5	103557818	103558018	+	1	NA	NA	NA	71485	NM_029415	75750	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	0.025000	0.412935	-49(GTCTATTTAGGG,-,0.00),60(GTGTCTATATGG,-,0.00)
mm_21386.1	chr2	157540793	157540993	-	1	NA	NA	NA	-19185	NM_001291129	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.030000	0.487562	-26(TCCTTTTTAAGA,-,0.00)
mm_106180.1	chr11	116694690	116694890	-	1	NA	NA	NA	-130	NM_009180	20446	Mm.3947	NM_009180	ENSMUSG00000057286	St6galnac2	II|ST6GalNAc|Siat7|Siat7b	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding	0.080000	0.676617	
mm_67599.1	chr7	83735352	83735552	-	1	NA	NA	NA	38	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.015000	0.542289	
mm_150799.1	chr19	44304507	44304707	+	1	NA	NA	NA	1436	NR_039574	100628619		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.010000	0.512438	
mm_20959.1	chr2	151744109	151744309	-	1	NA	NA	NA	-2899	NM_001305244	228769	Mm.146984	NM_144889	ENSMUSG00000032869	Psmf1	AW048666|BC012260|PI31	proteasome (prosome, macropain) inhibitor subunit 1	protein-coding	0.010000	0.517413	
mm_86615.1	chr10	13965201	13965401	+	1	NA	NA	NA	-1078	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.065000	0.537313	
mm_80944.1	chr9	102719994	102720194	+	1	NA	NA	NA	2290	NM_019764	56332	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0.005000	0.542289	
mm_101089.1	chr11	11853457	11853657	-	1	NA	NA	NA	-14566	NR_045178	73321	Mm.443306	NR_045178	ENSMUSG00000086391	1700042O10Rik	-	RIKEN cDNA 1700042O10 gene	ncRNA	0.000000	0.388060	
mm_95300.1	chr11	46086591	46086791	+	1	NA	NA	NA	-15579	NR_106177	102465996		NR_106177	ENSMUSG00000098942	Mir8100	Gm27638|mmu-mir-8100	microRNA 8100	ncRNA	0.005000	0.472637	
mm_6979.1	chr1	86356089	86356289	-	1	NA	NA	NA	138	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.000000	0.343284	
mm_129011.1	chr15	74914428	74914628	-	1	NA	NA	NA	-32824	NM_025929	67038	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.000000	0.383085	
mm_85645.1	chr9	107656057	107656257	-	1	NA	NA	NA	11242	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.020000	0.606965	
mm_70368.1	chr8	9417892	9418092	+	1	NA	NA	NA	273323	NR_073360	74688	Mm.159298	NR_073360	ENSMUSG00000109215	4930453L07Rik	-	RIKEN cDNA 4930453L07 gene	ncRNA	0.005000	0.298507	
mm_133324.1	chr16	78301370	78301570	+	1	NA	NA	NA	-201	NM_009988	13052	Mm.66222	NM_009988	ENSMUSG00000022865	Cxadr	2610206D03Rik|AU016810|AW553441|CAR|MCAR|MCVADR	coxsackie virus and adenovirus receptor	protein-coding	0.045000	0.606965	
mm_128225.1	chr15	36555231	36555431	-	1	NA	NA	NA	237	NM_001347022	66696	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	0.040000	0.582090	
mm_163339.1	chr12	13536378	13536578	+	1	NA	NA	NA	91168	NR_136761	102639399	Mm.122052	NR_136761		Gm35725	-	predicted gene, 35725	ncRNA	0.010000	0.437811	
mm_152603.1	chr19	11803343	11803543	-	1	NA	NA	NA	15960	NM_001286543	20908	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.015000	0.407960	
mm_104356.1	chr11	94302382	94302582	-	1	NA	NA	NA	19429	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.000000	0.358209	
mm_109748.1	chr12	117657934	117658134	+	1	NA	NA	NA	141555	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.015000	0.398010	
mm_117028.1	chr13	58271823	58272023	-	1	NA	NA	NA	2265	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.000000	0.343284	
mm_128390.1	chr15	43166988	43167188	-	1	NA	NA	NA	3730	NM_172815	239405	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.005000	0.288557	
mm_169147.1	chr13	62510608	62510808	-	1	NA	NA	NA	-43896	NM_001136496	71508	Mm.442497	NM_178875	ENSMUSG00000055228	Zfp935	8430426H19Rik|Es113	zinc finger protein 935	protein-coding	0.005000	0.442786	
mm_133900.1	chr16	97547436	97547636	+	1	NA	NA	NA	11453	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.000000	0.487562	
mm_75717.1	chr8	68993122	68993322	-	1	NA	NA	NA	-95514	NM_007509	11966	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0.005000	0.427861	
mm_95813.1	chr11	55123838	55124038	+	1	NA	NA	NA	25953	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.030000	0.482587	
mm_86429.1	chr10	3859655	3859855	+	1	NA	NA	NA	-12912	NM_001033253	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.015000	0.452736	
mm_81352.1	chr9	108648627	108648827	+	1	NA	NA	NA	653	NM_011790	23807	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.125000	0.626866	
mm_89480.1	chr10	93578479	93578679	+	1	NA	NA	NA	-10834	NR_045810	74454	Mm.410794	NR_045810	ENSMUSG00000097407	4933408J17Rik	-	RIKEN cDNA 4933408J17 gene	ncRNA	0.030000	0.512438	
mm_27513.1	chr3	56174164	56174364	-	1	NA	NA	NA	9437	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.005000	0.402985	
mm_156842.1	chrX	164382267	164382467	+	1	NA	NA	NA	8845	NM_010216	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.040000	0.592040	
mm_101417.1	chr11	29345908	29346108	-	1	NA	NA	NA	-28164	NM_176841	108686	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0.000000	0.457711	-33(GAGTATAAATAG,-,0.00)
mm_11128.1	chr2	28229929	28230129	+	1	NA	NA	NA	24340	NM_019498	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.010000	0.552239	
mm_36543.1	chr4	86669356	86669556	-	1	NA	NA	NA	603	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.005000	0.487562	
mm_74306.1	chr8	126566199	126566399	+	1	NA	NA	NA	27137	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.015000	0.611940	
mm_165212.1	chr2	35496106	35496306	+	1	NA	NA	NA	-34757	NM_001145821	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.020000	0.437811	
mm_106553.1	chr11	120617699	120617899	-	1	NA	NA	NA	91	NM_024229	68671	Mm.21439	NM_024229	ENSMUSG00000025137	Pcyt2	1110033E03Rik|ET	phosphate cytidylyltransferase 2, ethanolamine	protein-coding	0.115000	0.721393	
mm_95932.1	chr11	58380447	58380647	+	1	NA	NA	NA	-99	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.035000	0.487562	
mm_1462.1	chr1	69600458	69600658	+	1	NA	NA	NA	85402	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.005000	0.338308	76(CCTTTTCTACAG,+,0.00)
mm_10466.1	chr2	14316087	14316287	+	1	NA	NA	NA	55184	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.020000	0.412935	
mm_157476.1	chrX	48143535	48143735	-	1	NA	NA	NA	-2801	NM_001313749	74131	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	0.020000	0.592040	
mm_82338.1	chr9	10904603	10904803	-	1	NA	NA	NA	23	NM_001033359	244682	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0.030000	0.587065	-16(TGCCATTAAAGC,-,0.00)
mm_143266.1	chr17	65639712	65639912	-	1	NA	NA	NA	-56	NM_153519	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.000000	0.487562	
mm_9039.1	chr1	167243089	167243289	-	1	NA	NA	NA	41938	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.015000	0.487562	
mm_125870.1	chr15	75596534	75596734	+	1	NA	NA	NA	-24	NM_026730	68453	Mm.46367	NM_026730	ENSMUSG00000022579	Gpihbp1	1110002J19Rik|GPI-HBP1	GPI-anchored HDL-binding protein 1	protein-coding	0.015000	0.562189	
mm_33820.1	chr4	135398224	135398424	+	1	NA	NA	NA	-97	NM_145555	230822	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	0.070000	0.696517	
mm_86905.1	chr10	22343355	22343555	+	1	NA	NA	NA	-18439	NM_020030	56554	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0.010000	0.532338	
mm_143181.1	chr17	57290624	57290824	-	1	NA	NA	NA	11624	NM_001163815	22324	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.025000	0.497512	
mm_100442.1	chr11	119486385	119486585	+	1	NA	NA	NA	-4862	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.005000	0.393035	
mm_75840.1	chr8	70599635	70599835	-	1	NA	NA	NA	5254	NM_023627	71780	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.030000	0.661692	
mm_12265.1	chr2	68961040	68961240	+	1	NA	NA	NA	99699	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.005000	0.363184	
mm_138355.1	chr17	34981819	34982019	+	1	NA	NA	NA	65	NM_001204274	27756	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.100000	0.676617	
mm_4144.1	chr1	170979668	170979868	+	1	NA	NA	NA	-3697	NM_010187	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.005000	0.502488	
mm_34586.1	chr4	150187318	150187518	+	1	NA	NA	NA	13717	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.020000	0.472637	
mm_163125.1	chr11	77078474	77078674	+	1	NA	NA	NA	-137	NM_001012309	237859	Mm.156195	NM_001012309	ENSMUSG00000037958	Nsrp1	8030451K07|AI851076|AL022898|Ccdc55|NSpr70|NSrp70	nuclear speckle regulatory protein 1	protein-coding	0.095000	0.606965	
mm_29317.1	chr3	108012656	108012856	-	1	NA	NA	NA	5217	NM_010358	14862	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	0.035000	0.552239	
mm_89541.1	chr10	94568036	94568236	+	1	NA	NA	NA	-7121	NM_001168684	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.040000	0.522388	
mm_161589.1	chr16	33400316	33400516	+	1	NA	NA	NA	19641	NM_011749	22661	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0.085000	0.706468	
mm_61075.1	chr7	51621704	51621904	+	1	NA	NA	NA	-26	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.055000	0.567164	
mm_40685.1	chr5	65763230	65763430	+	1	NA	NA	NA	-191	NM_001024917	333789	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.100000	0.671642	
mm_18911.1	chr2	76735162	76735362	-	1	NA	NA	NA	59947	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.015000	0.452736	
mm_54751.1	chr6	41033093	41033293	-	1	NA	NA	NA	2316	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.417910	
mm_167212.1	chr8	3664444	3664644	-	1	NA	NA	NA	-1218	NM_026985	69189	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0.010000	0.492537	
mm_93296.1	chr10	96523878	96524078	-	1	NA	NA	NA	-93023	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.010000	0.437811	
mm_4848.1	chr1	187125038	187125238	+	1	NA	NA	NA	0	NR_040554	69308	Mm.490882	NR_040554	ENSMUSG00000089730	1700007P06Rik	-	RIKEN cDNA 1700007P06 gene	ncRNA	0.005000	0.492537	
mm_173038.1	chrX	108893152	108893352	+	1	NA	NA	NA	58774	NR_015493	69964	Mm.160066	NR_015493	ENSMUSG00000086629	2810403D21Rik	1810022M18Rik|4632410B05Rik|AU017716	RIKEN cDNA 2810403D21 gene	ncRNA	0.010000	0.492537	
mm_138785.1	chr17	37270831	37271031	+	1	NA	NA	NA	697	NM_013819	14991	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	0.015000	0.532338	
mm_75482.1	chr8	48668518	48668718	-	1	NA	NA	NA	6072	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.010000	0.308458	
mm_43874.1	chr5	143622463	143622663	+	1	NA	NA	NA	116	NM_011182	19159	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0.135000	0.741294	
mm_102690.1	chr11	65649705	65649905	-	1	NA	NA	NA	85027	NR_030417	791070		NR_030417	ENSMUSG00000076460	Mir744	Mirn744|mir-744|mmu-mir-744	microRNA 744	ncRNA	0.015000	0.467662	
mm_164539.1	chr17	7079159	7079359	+	1	NA	NA	NA	53716	NM_001033442	381059	Mm.490353	NM_001033442	ENSMUSG00000095720	Gm1604b	ENSMUSG00000073470|Gm1604	predicted gene 1604b	protein-coding	0.030000	0.512438	
mm_143116.1	chr17	57207342	57207542	-	1	NA	NA	NA	9786	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.005000	0.497512	
mm_113963.1	chr13	51408669	51408869	+	1	NA	NA	NA	151	NM_010101	13610	Mm.136736	NM_010101	ENSMUSG00000067586	S1pr3	AI132464|Edg3|Lpb3|S1p3	sphingosine-1-phosphate receptor 3	protein-coding	0.050000	0.636816	
mm_103503.1	chr11	76577937	76578137	-	1	NA	NA	NA	-298	NM_198894	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.025000	0.537313	35(TGCCTTAAAAGA,-,0.00),36(GCCTTAAAAGAG,+,0.00)
mm_4267.1	chr1	171503537	171503737	+	1	NA	NA	NA	159	NM_019484	56009	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	0.100000	0.616915	
mm_50101.1	chr6	41533082	41533282	+	1	NA	NA	NA	11406	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.502488	
mm_140139.1	chr17	79918811	79919011	+	1	NA	NA	NA	-22788	NM_001286647	56298	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.005000	0.492537	
mm_15888.1	chr2	164857686	164857886	+	1	NA	NA	NA	-78	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.050000	0.621891	
mm_45355.1	chr5	65926725	65926925	-	1	NA	NA	NA	-40299	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.015000	0.507463	
mm_44073.1	chr5	148959166	148959366	+	1	NA	NA	NA	9016	NR_040686	71473	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	0.050000	0.611940	
mm_65747.1	chr7	28544347	28544547	-	1	NA	NA	NA	2807	NM_001081115	233038	Mm.224815	NM_001081115	ENSMUSG00000047586	Nccrp1	1190020J12Rik|Gm163|NCCRP-1	non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)	protein-coding	0.055000	0.656716	
mm_35458.1	chr4	40703096	40703296	-	1	NA	NA	NA	-2	NM_001025445	66408	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0.075000	0.537313	
mm_151208.1	chr19	53600364	53600564	+	1	NA	NA	NA	68	NM_007790	13006	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.130000	0.731343	
mm_49017.1	chr6	4758635	4758835	+	1	NA	NA	NA	11429	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.005000	0.393035	
mm_67385.1	chr7	79842313	79842513	-	1	NA	NA	NA	-61	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.015000	0.592040	
mm_18344.1	chr2	58156949	58157149	-	1	NA	NA	NA	3073	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.000000	0.412935	
mm_20745.1	chr2	140042055	140042255	-	1	NA	NA	NA	24650	NM_001159640	75812	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0.025000	0.442786	
mm_98427.1	chr11	94653916	94654116	+	1	NA	NA	NA	225	NM_053161	94064	Mm.34951	NM_053161	ENSMUSG00000024414	Mrpl27	A630055F16Rik|D11Moh47|D18Ertd643e	mitochondrial ribosomal protein L27	protein-coding	0.050000	0.537313	
mm_157861.1	chrX	75114570	75114770	-	1	NA	NA	NA	16346	NM_008621	17524	Mm.391267	NM_008621	ENSMUSG00000031402	Mpp1	55kDa|C130070C03Rik|p55	membrane protein, palmitoylated	protein-coding	0.015000	0.378109	
mm_118890.1	chr14	26608459	26608659	+	1	NA	NA	NA	29009	NM_145969	211922	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	0.025000	0.393035	
mm_8379.1	chr1	151250694	151250894	-	1	NA	NA	NA	-93704	NM_001039512	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.025000	0.507463	
mm_133212.1	chr16	75592852	75593052	+	1	NA	NA	NA	61	NM_198302	224344	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	0.085000	0.656716	
mm_71475.1	chr8	46535583	46535783	+	1	NA	NA	NA	-16386	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.005000	0.353234	
mm_97236.1	chr11	75655890	75656090	+	1	NA	NA	NA	-25	NM_001080775	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.085000	0.731343	
mm_79215.1	chr9	49108564	49108764	+	1	NA	NA	NA	5885	NM_030709	80893	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	0.005000	0.447761	
mm_78986.1	chr9	45395003	45395203	+	1	NA	NA	NA	-4606	NR_028499	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.035000	0.552239	
mm_59431.1	chr7	27129712	27129912	+	1	NA	NA	NA	9857	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.040000	0.532338	
mm_166170.1	chr5	23586713	23586913	+	1	NA	NA	NA	29758	NM_009274	20817	Mm.288728	NM_009274	ENSMUSG00000062604	Srpk2	AW226533|AW492537|AW547358|Wbp6|mSRPK2	serine/arginine-rich protein specific kinase 2	protein-coding	0.020000	0.507463	
mm_160511.1	chr9	21142984	21143184	-	1	NA	NA	NA	6822	NM_016742	12539	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0.050000	0.621891	
mm_126411.1	chr15	80256812	80257012	+	1	NA	NA	NA	1728	NM_009716	11911	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	0.005000	0.477612	
mm_5261.1	chr1	16770054	16770254	-	1	NA	NA	NA	81698	NM_016923	17087	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0.015000	0.457711	
mm_133157.1	chr16	70400621	70400821	+	1	NA	NA	NA	86772	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.000000	0.248756	
mm_15640.1	chr2	163054588	163054788	+	1	NA	NA	NA	53	NM_008652	17865	Mm.4594	NM_008652	ENSMUSG00000017861	Mybl2	B-Myb|Bmyb	myeloblastosis oncogene-like 2	protein-coding	0.115000	0.721393	
mm_122169.1	chr14	31436099	31436299	-	1	NA	NA	NA	-99	NM_011894	24056	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.065000	0.661692	
mm_133869.1	chr16	96372565	96372765	+	1	NA	NA	NA	10901	NM_028078	72058	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.015000	0.537313	
mm_137006.1	chr17	17625384	17625584	+	1	NA	NA	NA	-995	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.055000	0.626866	
mm_81586.1	chr9	110422757	110422957	+	1	NA	NA	NA	3049	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.005000	0.532338	68(CCCTTAATGGGG,+,0.00)
mm_66613.1	chr7	45466685	45466885	-	1	NA	NA	NA	113	NM_007527	12028	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.115000	0.731343	
mm_92309.1	chr10	75185095	75185295	-	1	NA	NA	NA	-26878	NM_153406	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.005000	0.537313	
mm_157409.1	chrX	38440127	38440327	-	1	NA	NA	NA	16233	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.025000	0.427861	
mm_126867.1	chr15	89355636	89355836	+	1	NA	NA	NA	17	NM_001271601	52683	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	0.100000	0.646766	
mm_4668.1	chr1	180382257	180382457	+	1	NA	NA	NA	-51808	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.015000	0.512438	
mm_10580.1	chr2	18155888	18156088	+	1	NA	NA	NA	91403	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.010000	0.333333	
mm_57563.1	chr6	127125536	127125736	-	1	NA	NA	NA	-16084	NM_177003	319801	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	0.015000	0.338308	
mm_164334.1	chr16	10796949	10797149	+	1	NA	NA	NA	-226	NM_013637	19118	Mm.42733	NM_013637	ENSMUSG00000022501	Prm1	Prm-1	protamine 1	protein-coding	0.000000	0.507463	
mm_118130.1	chr13	104623225	104623425	-	1	NA	NA	NA	193628	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.015000	0.547264	
mm_33151.1	chr4	125445257	125445457	+	1	NA	NA	NA	-45474	NM_001081097	14807	Mm.40896	NM_001081097	ENSMUSG00000001985	Grik3	9630027E11|GluK3|GluR7-3|Glur-7|Glur7	glutamate receptor, ionotropic, kainate 3	protein-coding	0.025000	0.527363	
mm_19983.1	chr2	118545066	118545266	-	1	NA	NA	NA	-579	NR_138603	171543	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.025000	0.562189	
mm_167054.1	chr7	87650080	87650280	+	1	NA	NA	NA	66012	NM_001143834	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0.010000	0.358209	
mm_17108.1	chr2	24049314	24049514	-	1	NA	NA	NA	-35	NM_080462	140483	Mm.33120	NM_080462	ENSMUSG00000026986	Hnmt	1500031F01Rik|AI788969	histamine N-methyltransferase	protein-coding	0.015000	0.383085	
mm_34683.1	chr4	151685773	151685973	+	1	NA	NA	NA	175895	NM_001081557	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.040000	0.572139	
mm_105535.1	chr11	106301327	106301527	-	1	NA	NA	NA	469	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.020000	0.587065	
mm_62869.1	chr7	114722688	114722888	+	1	NA	NA	NA	4145	NM_054084	116903	Mm.273838	NM_054084	ENSMUSG00000030666	Calcb	CGRP2|Calc2	calcitonin-related polypeptide, beta	protein-coding	0.025000	0.472637	
mm_80155.1	chr9	70934175	70934375	+	1	NA	NA	NA	533	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.010000	0.437811	
mm_128506.1	chr15	53189000	53189200	-	1	NA	NA	NA	157083	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.005000	0.378109	
mm_39731.1	chr5	28913933	28914133	+	1	NA	NA	NA	-281960	NM_001289757	56874	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	0.010000	0.457711	
mm_36370.1	chr4	76450503	76450703	-	1	NA	NA	NA	-1172317	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.065000	0.606965	
mm_61917.1	chr7	90151411	90151611	+	1	NA	NA	NA	21279	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.005000	0.383085	
mm_107343.1	chr12	32724616	32724816	+	1	NA	NA	NA	-95619	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.020000	0.477612	
mm_26339.1	chr3	142547077	142547277	+	1	NA	NA	NA	-12875	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.005000	0.507463	
mm_108420.1	chr12	82169331	82169531	+	1	NA	NA	NA	-585	NM_001167983	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.100000	0.691542	
mm_46.1	chr1	6507737	6507937	+	1	NA	NA	NA	20606	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.005000	0.363184	
mm_107153.1	chr12	24572158	24572358	+	1	NA	NA	NA	-29	NM_001161406	195733	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead-like 1 (Drosophila)	protein-coding	0.130000	0.741294	
mm_160791.1	chr11	3157681	3157881	-	1	NA	NA	NA	33760	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.030000	0.557214	
mm_168016.1	chrY	90734425	90734625	+	1	NA	NA	NA	20525	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.030000	0.412935	
mm_17344.1	chr2	26604144	26604344	-	1	NA	NA	NA	173	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.110000	0.751244	
mm_169981.1	chr17	15010058	15010258	-	1	NA	NA	NA	26	NM_001123368	100041586	Mm.440445	NM_001123368	ENSMUSG00000079710	Gm3417	-	predicted gene 3417	protein-coding	0.135000	0.721393	
mm_71733.1	chr8	61995741	61995941	+	1	NA	NA	NA	67754	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.010000	0.308458	
mm_21379.1	chr2	157425079	157425279	-	1	NA	NA	NA	886	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.025000	0.577114	
mm_49169.1	chr6	14901164	14901364	+	1	NA	NA	NA	-85	NM_053242	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.075000	0.582090	
mm_51935.1	chr6	91684084	91684284	+	1	NA	NA	NA	117	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.115000	0.691542	
mm_114557.1	chr13	74208646	74208846	+	1	NA	NA	NA	-46	NM_177333	211446	Mm.261859	NM_177333	ENSMUSG00000034152	Exoc3	2810050O03Rik|E430013E20Rik|Sec6|Sec6l1	exocyst complex component 3	protein-coding	0.080000	0.592040	
mm_133765.1	chr16	94569643	94569843	+	1	NA	NA	NA	-463	NM_007890	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.105000	0.587065	-26(TTTTTTAAACCC,+,0.00)
mm_163913.1	chr14	33890237	33890437	+	1	NA	NA	NA	-33250	NM_145741	14560	Mm.432071	NM_145741	ENSMUSG00000021943	Gdf10	Bmp3b	growth differentiation factor 10	protein-coding	0.010000	0.557214	
mm_90543.1	chr10	128091510	128091710	+	1	NA	NA	NA	-1173	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.030000	0.572139	
mm_40925.1	chr5	76140208	76140408	+	1	NA	NA	NA	35	NM_020611	57357	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	0.135000	0.771144	
mm_85901.1	chr9	111055984	111056184	-	1	NA	NA	NA	1160	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.035000	0.557214	
mm_172692.1	chr8	6045120	6045320	+	1	NA	NA	NA	-939933	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.005000	0.398010	
mm_159041.1	chr1	180934994	180935194	+	1	NA	NA	NA	72	NM_010094	13590	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	0.030000	0.592040	
mm_149754.1	chr19	22692701	22692901	+	1	NA	NA	NA	182	NM_001035244	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.020000	0.522388	
mm_134194.1	chr16	10992982	10993182	-	1	NA	NA	NA	39	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.120000	0.766169	
mm_74840.1	chr8	23256965	23257165	-	1	NA	NA	NA	15	NM_020585	57437	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	0.110000	0.681592	
mm_124402.1	chr14	114948895	114949095	-	1	NA	NA	NA	-3047	NR_126548	74982		NR_126548		1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	0.035000	0.512438	
mm_96707.1	chr11	69655524	69655724	+	1	NA	NA	NA	587	NM_009235	20670	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0.080000	0.601990	
mm_75064.1	chr8	33747653	33747853	-	1	NA	NA	NA	17	NM_001206849	72632	Mm.443483	NM_001206849	ENSMUSG00000094500	Smim18	2700090O03Rik|AI835723	small integral membrane protein 18	protein-coding	0.030000	0.452736	
mm_217.1	chr1	16691640	16691840	+	1	NA	NA	NA	3284	NM_016923	17087	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0.010000	0.343284	-64(CCTTTTAGATCA,+,0.00)
mm_94742.1	chr11	21095640	21095840	+	1	NA	NA	NA	4416	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.005000	0.353234	
mm_43793.1	chr5	142702022	142702222	+	1	NA	NA	NA	21	NM_146257	243328	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.135000	0.771144	
mm_34606.1	chr4	150240822	150241022	+	1	NA	NA	NA	3598	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.005000	0.442786	
mm_72235.1	chr8	74873504	74873704	+	1	NA	NA	NA	430	NM_001294278	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	0.010000	0.557214	
mm_77235.1	chr8	115704746	115704946	-	1	NA	NA	NA	2048	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.005000	0.383085	
mm_83567.1	chr9	46315858	46316058	-	1	NA	NA	NA	4028	NM_183104	74361	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding	0.010000	0.512438	
mm_10243.1	chr2	8946862	8947062	+	1	NA	NA	NA	-242553	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.010000	0.402985	
mm_169924.1	chr16	57391320	57391520	-	1	NA	NA	NA	38143	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.085000	0.582090	
mm_6643.1	chr1	79439960	79440160	-	1	NA	NA	NA	30	NM_009129	20254	Mm.5038	NM_009129	ENSMUSG00000050711	Scg2	Chgc|SgII	secretogranin II	protein-coding	0.065000	0.567164	2(CTCTCTATAAGC,-,0.00)
mm_27251.1	chr3	37125711	37125911	-	1	NA	NA	NA	143	NM_008366	16183	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	0.015000	0.567164	
mm_84974.1	chr9	85323867	85324067	-	1	NA	NA	NA	3157	NM_001160378	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.010000	0.462687	
mm_57254.1	chr6	123283489	123283689	-	1	NA	NA	NA	6282	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.447761	
mm_85891.1	chr9	111055046	111055246	-	1	NA	NA	NA	2098	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.035000	0.432836	
mm_52184.1	chr6	99521285	99521485	+	1	NA	NA	NA	-392	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.120000	0.736318	
mm_92932.1	chr10	84527498	84527698	-	1	NA	NA	NA	6290	NM_175451	216197	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.030000	0.492537	
mm_170202.1	chr17	6948266	6948466	-	1	NA	NA	NA	-10	NM_001083945	100037282	Mm.29830	NM_001083945	ENSMUSG00000023806	Rsph3b	Rshl2b	radial spoke 3B homolog (Chlamydomonas)	protein-coding	0.080000	0.656716	
mm_70010.1	chr7	142443521	142443721	-	1	NA	NA	NA	1153	NM_009405	21953	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	0.020000	0.577114	
mm_63160.1	chr7	123462224	123462424	+	1	NA	NA	NA	30	NM_001109045	11833	Mm.273175	NM_007474	ENSMUSG00000030762	Aqp8	AI255744|AQP-8	aquaporin 8	protein-coding	0.025000	0.507463	1(GTCCTTTAAAAG,-,0.00),2(TCCTTTAAAAGC,-,0.00),3(CCTTTAAAAGCG,+,0.00)
mm_141537.1	chr17	31855721	31855921	-	1	NA	NA	NA	-29	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.180000	0.810945	
mm_14259.1	chr2	128204162	128204362	+	1	NA	NA	NA	76687	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.025000	0.517413	
mm_57571.1	chr6	127130196	127130396	-	1	NA	NA	NA	-19093	NR_040274	77558	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.035000	0.442786	
mm_100743.1	chr11	4118646	4118846	-	1	NA	NA	NA	-17	NM_144520	67815	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	0.105000	0.696517	-72(TCCTTTAAGAGG,-,0.00),-71(CCTTTAAGAGGC,+,0.00)
mm_86879.1	chr10	21997047	21997247	+	1	NA	NA	NA	2481	NM_011361	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.035000	0.512438	
mm_64526.1	chr7	143978224	143978424	+	1	NA	NA	NA	-30930	NR_037292	100526562		NR_037292	ENSMUSG00000093221	Mir3105	mmu-mir-3105	microRNA 3105	ncRNA	0.110000	0.721393	
mm_108586.1	chr12	85219411	85219611	+	1	NA	NA	NA	30	NM_145445	217715	Mm.29041	NM_145445	ENSMUSG00000004788	Eif2b2	EIF-2Bbeta|EIF2B	eukaryotic translation initiation factor 2B, subunit 2 beta	protein-coding	0.075000	0.577114	
mm_105441.1	chr11	104402760	104402960	-	1	NA	NA	NA	39431	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.005000	0.407960	
mm_99170.1	chr11	100824128	100824328	+	1	NA	NA	NA	-1658	NM_011489	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.010000	0.472637	
mm_97869.1	chr11	83175097	83175297	+	1	NA	NA	NA	11	NM_001302559	20558	Mm.38192	NM_011410	ENSMUSG00000000204	Slfn4	AI450778	schlafen 4	protein-coding	0.050000	0.462687	
mm_163012.1	chr11	44621512	44621712	+	1	NA	NA	NA	3512	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.020000	0.631841	
mm_131289.1	chr16	11322823	11323023	+	1	NA	NA	NA	19	NM_028964	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.135000	0.771144	
mm_128127.1	chr15	31337990	31338190	-	1	NA	NA	NA	29669	NM_001164441	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.020000	0.452736	
mm_131439.1	chr16	16072664	16072864	+	1	NA	NA	NA	74087	NM_146068	224008	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0.010000	0.502488	
mm_103285.1	chr11	72215098	72215298	-	1	NA	NA	NA	60	NM_001163728	75304	Mm.340776	NM_001163728		4930563E22Rik	-	RIKEN cDNA 4930563E22 gene	protein-coding	0.080000	0.587065	
mm_46974.1	chr5	115194151	115194351	-	1	NA	NA	NA	130	NM_001310712	29867	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	0.125000	0.771144	23(CCGCATTTAAGC,-,0.00),25(GCATTTAAGCGG,+,0.00)
mm_84644.1	chr9	71481323	71481523	-	1	NA	NA	NA	3535	NM_001164793	28015	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	0.030000	0.557214	
mm_159998.1	chr6	119108082	119108282	-	1	NA	NA	NA	313	NM_001159534	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.040000	0.502488	
mm_49944.1	chr6	39872114	39872314	+	1	NA	NA	NA	-61278	NM_001010930	14548	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.085000	0.666667	
mm_155145.1	chrX	52788242	52788442	+	1	NA	NA	NA	-2858	NM_001034059	434778	Mm.23411	NM_001034059	ENSMUSG00000073207	Ccdc160	6330534C20Rik	coiled-coil domain containing 160	protein-coding	0.020000	0.412935	
mm_108132.1	chr12	76079468	76079668	+	1	NA	NA	NA	97691	NM_010157	13983	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0.005000	0.358209	-83(GTATATAAAAAG,-,0.00),22(TCCTCTAAGAGG,-,0.00),23(CCTCTAAGAGGG,+,0.00)
mm_38596.1	chr4	141825905	141826105	-	1	NA	NA	NA	0	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.010000	0.527363	
mm_81772.1	chr9	114440760	114440960	+	1	NA	NA	NA	39765	NM_001200002	100504715	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	0.020000	0.512438	
mm_60744.1	chr7	45448890	45449090	+	1	NA	NA	NA	10896	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.010000	0.487562	
mm_47.1	chr1	6518410	6518610	+	1	NA	NA	NA	31279	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.437811	
mm_120579.1	chr14	69555329	69555529	+	1	NA	NA	NA	28	NM_026174	67464	Mm.489765	NM_026174	ENSMUSG00000095463	Entpd4	1200014F22Rik|4930513O14Rik|A430102M06Rik|AI414893|Lysal1|mKIAA0392	ectonucleoside triphosphate diphosphohydrolase 4	protein-coding	0.165000	0.771144	
mm_84227.1	chr9	61961534	61961734	-	1	NA	NA	NA	-14835	NM_024245	71819	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.010000	0.512438	
mm_12872.1	chr2	84515471	84515671	+	1	NA	NA	NA	-8698	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	0.015000	0.547264	
mm_85076.1	chr9	91361641	91361841	-	1	NA	NA	NA	4058	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.050000	0.572139	
mm_10311.1	chr2	11172195	11172395	+	1	NA	NA	NA	-87	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.105000	0.721393	
mm_98474.1	chr11	94950350	94950550	+	1	NA	NA	NA	14226	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.060000	0.592040	
mm_52732.1	chr6	120381941	120382141	+	1	NA	NA	NA	-17672	NR_045558	67200	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	0.000000	0.388060	-7(TTTTTTAGAGAC,+,0.00)
mm_161010.1	chr11	118482421	118482621	+	1	NA	NA	NA	5561	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.025000	0.552239	
mm_142262.1	chr17	39844638	39844838	-	1	NA	NA	NA	1741	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.115000	0.721393	
mm_113135.1	chr13	24633493	24633693	+	1	NA	NA	NA	-5055	NM_001080381	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.005000	0.522388	
mm_167962.1	chrX	145505131	145505331	-	1	NA	NA	NA	-17592	NM_153319	27494	Mm.100068	NM_153319	ENSMUSG00000041688	Amot	CAG-2|D0Kist1|Sii6	angiomotin	protein-coding	0.050000	0.696517	
mm_79644.1	chr9	59560928	59561128	+	1	NA	NA	NA	-17309	NM_175235	76183	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0.025000	0.552239	
mm_17844.1	chr2	34372047	34372247	-	1	NA	NA	NA	-102	NM_016768	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.190000	0.835821	
mm_65519.1	chr7	25756030	25756230	-	1	NA	NA	NA	-1410	NM_144922	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.055000	0.601990	
mm_96628.1	chr11	69156957	69157157	+	1	NA	NA	NA	-15	NM_009659	11686	Mm.340329	NM_009659	ENSMUSG00000032807	Alox12b	12R-LOX|Aloxe2|e-LOX2	arachidonate 12-lipoxygenase, 12R type	protein-coding	0.060000	0.651741	
mm_88202.1	chr10	70111869	70112069	+	1	NA	NA	NA	14848	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.025000	0.398010	17(CCTTATAGGTCG,+,0.00),39(CCTTATAGACAA,+,0.00)
mm_52334.1	chr6	110109115	110109315	+	1	NA	NA	NA	-536297	NM_001346640	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.000000	0.422886	
mm_135038.1	chr16	32877522	32877722	-	1	NA	NA	NA	-162	NM_027226	69823	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	0.120000	0.711443	
mm_18102.1	chr2	44988344	44988544	-	1	NA	NA	NA	34733	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.398010	
mm_18858.1	chr2	75685414	75685614	-	1	NA	NA	NA	19149	NR_132727	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.020000	0.502488	
mm_39018.1	chr4	152131337	152131537	-	1	NA	NA	NA	-2512	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.075000	0.716418	
mm_137443.1	chr17	26512644	26512844	+	1	NA	NA	NA	-4272	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.000000	0.492537	
mm_73090.1	chr8	94532894	94533094	+	1	NA	NA	NA	-34	NM_153507	234577	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0.135000	0.791045	
mm_146340.1	chr18	82475119	82475319	+	1	NA	NA	NA	96	NM_001025245	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.115000	0.726368	
mm_142278.1	chr17	39848549	39848749	-	1	NA	NA	NA	5652	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.125000	0.671642	-34(GGCCAGAAAAGC,-,0.00)
mm_143207.1	chr17	62858272	62858472	-	1	NA	NA	NA	22945	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.015000	0.373134	
mm_16204.1	chr2	173033983	173034183	+	1	NA	NA	NA	12181	NM_019547	56190	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.030000	0.592040	
mm_49990.1	chr6	41047237	41047437	+	1	NA	NA	NA	-11828	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.000000	0.482587	
mm_55407.1	chr6	60993737	60993937	-	1	NA	NA	NA	49520	NM_001163507	70945	Mm.389770	NM_027613	ENSMUSG00000054641	Mmrn1	4921530G03Rik|Emilin4|Mmrn	multimerin 1	protein-coding	0.005000	0.323383	
mm_44862.1	chr5	34288338	34288538	-	1	NA	NA	NA	-114	NM_001015039	231125	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.175000	0.781095	
mm_134791.1	chr16	24089980	24090180	-	1	NA	NA	NA	-101468	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.000000	0.492537	
mm_171239.1	chr3	70059638	70059838	+	1	NA	NA	NA	52125	NM_001018031	229389	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1	protein-coding	0.000000	0.422886	
mm_123284.1	chr14	61438233	61438433	-	1	NA	NA	NA	1614	NM_008466	16648	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0.005000	0.328358	
mm_77701.1	chr8	126590359	126590559	-	1	NA	NA	NA	2977	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.020000	0.467662	
mm_57763.1	chr6	129233874	129234074	-	1	NA	NA	NA	4071	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.020000	0.487562	
mm_136198.1	chr16	89701343	89701543	-	1	NA	NA	NA	116909	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.025000	0.557214	-34(CACTATAAAAGG,-,0.00)
mm_79206.1	chr9	48987332	48987532	+	1	NA	NA	NA	2047	NM_175482	235323	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	0.020000	0.442786	-91(TCCCTTAAAAGA,-,0.00),-90(CCCTTAAAAGAT,+,0.00)
mm_129190.1	chr15	76350610	76350810	-	1	NA	NA	NA	400	NM_025340	106025	Mm.41463	NM_025340	ENSMUSG00000022552	Sharpin	0610041B22Rik|AW121341|RBCKL1|SIPL1|cpdm	SHANK-associated RH domain interacting protein	protein-coding	0.080000	0.626866	
mm_66177.1	chr7	34013845	34014045	-	1	NA	NA	NA	-3	NM_001100464	233099	Mm.110829	NM_001100464	ENSMUSG00000066584	Scgb2b27	Abpbg27|Abpbg5|Scgb2b5	secretoglobin, family 2B, member 27	protein-coding	0.015000	0.502488	26(TCGTTTATAAGG,-,0.00)
mm_104576.1	chr11	96953638	96953838	-	1	NA	NA	NA	9592	NR_003293	319371	Mm.436865	NR_003293	ENSMUSG00000078700	D030028A08Rik	-	RIKEN cDNA D030028A08 gene	ncRNA	0.010000	0.398010	
mm_21013.1	chr2	152396520	152396720	-	1	NA	NA	NA	1426	NM_011438	20667	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.025000	0.626866	
mm_126824.1	chr15	88854608	88854808	+	1	NA	NA	NA	-7486	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.015000	0.587065	
mm_130692.1	chr15	100682740	100682940	-	1	NA	NA	NA	5080	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.000000	0.567164	
mm_127560.1	chr15	102203098	102203298	+	1	NA	NA	NA	-447	NM_001289694	68744	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0.035000	0.532338	61(AGCTTTAAAAAA,-,0.00)
mm_152552.1	chr19	11484417	11484617	-	1	NA	NA	NA	-7521	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.015000	0.437811	-8(GTCTTTTTGAGG,-,0.00)
mm_72574.1	chr8	84148213	84148413	+	1	NA	NA	NA	275	NM_029045	74666	Mm.33625	NM_029045	ENSMUSG00000008129	4930432K21Rik	-	RIKEN cDNA 4930432K21 gene	protein-coding	0.045000	0.572139	
mm_31709.1	chr4	62619601	62619801	+	1	NA	NA	NA	29	NM_134257	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.045000	0.631841	
mm_111609.1	chr12	102400091	102400291	-	1	NA	NA	NA	39622	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.025000	0.527363	
mm_151992.1	chr19	5856661	5856861	-	1	NA	NA	NA	-11281	NR_003513	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.025000	0.611940	
mm_2191.1	chr1	89070382	89070582	+	1	NA	NA	NA	20	NM_133816	98402	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.140000	0.786070	
mm_137317.1	chr17	24886788	24886988	+	1	NA	NA	NA	214	NM_001163751	79043	Mm.274794	NM_027141	ENSMUSG00000024160	Spsb3	2310012N15Rik|3300001M01Rik|SSB3|Tce1|mKIAA4204	splA/ryanodine receptor domain and SOCS box containing 3	protein-coding	0.120000	0.721393	
mm_155295.1	chrX	61183845	61184045	+	1	NA	NA	NA	1613	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.005000	0.393035	
mm_144118.1	chr18	4563027	4563227	+	1	NA	NA	NA	-71802	NM_001081963	240185	Mm.33179	NM_001081963	ENSMUSG00000033960	9430020K01Rik	1110056P05Rik|Gm328|Jcad|mKIAA1462	RIKEN cDNA 9430020K01 gene	protein-coding	0.025000	0.507463	
mm_71727.1	chr8	61976896	61977096	+	1	NA	NA	NA	48909	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.000000	0.303483	
mm_71320.1	chr8	44935271	44935471	+	1	NA	NA	NA	-14837	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.060000	0.626866	
mm_25272.1	chr3	104864981	104865181	+	1	NA	NA	NA	575	NM_153091	229681	Mm.206379	NM_153091	ENSMUSG00000045576	St7l	St7r	suppression of tumorigenicity 7-like	protein-coding	0.090000	0.691542	
mm_113185.1	chr13	24937055	24937255	+	1	NA	NA	NA	-246	NR_102323	493800	Mm.458692	NR_102323		9330162012Rik	-	cDNA RIKEN 9330162012 gene	ncRNA	0.045000	0.477612	
mm_138470.1	chr17	35190267	35190467	+	1	NA	NA	NA	-1927	NM_010734	16988	Mm.19379	NM_010734	ENSMUSG00000073412	Lst1	B144	leukocyte specific transcript 1	protein-coding	0.000000	0.522388	
mm_22072.1	chr2	168741885	168742085	-	1	NA	NA	NA	151	NM_001289446	11981	Mm.330819	NM_015731	ENSMUSG00000027546	Atp9a	IIa	ATPase, class II, type 9A	protein-coding	0.240000	0.880597	
mm_26370.1	chr3	142560511	142560711	+	1	NA	NA	NA	115	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.010000	0.487562	
mm_171142.1	chr3	151678874	151679074	+	1	NA	NA	NA	70985	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.045000	0.636816	
mm_51173.1	chr6	70726542	70726742	+	1	NA	NA	NA	65533	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.025000	0.477612	
mm_162449.1	chr1	121307264	121307464	+	1	NA	NA	NA	20314	NM_001271531	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.005000	0.412935	
mm_89917.1	chr10	111186603	111186803	+	1	NA	NA	NA	21901	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.010000	0.373134	
mm_90135.1	chr10	117792880	117793080	+	1	NA	NA	NA	-275	NM_134010	103468	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.055000	0.562189	
mm_28917.1	chr3	98855974	98856174	-	1	NA	NA	NA	3720	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.000000	0.512438	
mm_96229.1	chr11	62550485	62550685	+	1	NA	NA	NA	-586	NM_011664	22187	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.015000	0.487562	
mm_45473.1	chr5	69542505	69542705	-	1	NA	NA	NA	42	NM_023784	75581	Mm.154776	NM_023784	ENSMUSG00000029158	Yipf7	2310016N21Rik|Yip1b	Yip1 domain family, member 7	protein-coding	0.015000	0.388060	
mm_21569.1	chr2	164236056	164236256	-	1	NA	NA	NA	2185	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.015000	0.452736	
mm_36503.1	chr4	83467114	83467314	-	1	NA	NA	NA	19234	NM_001290527	101739	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	0.005000	0.278607	
mm_152407.1	chr19	10604227	10604427	-	1	NA	NA	NA	-69	NM_145496	225913	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	0.025000	0.542289	
mm_159890.1	chr6	28831885	28832085	-	1	NA	NA	NA	-238	NM_138682	192198	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.040000	0.542289	
mm_32161.1	chr4	99983817	99984017	+	1	NA	NA	NA	54466	NM_028132	72157	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.020000	0.502488	
mm_59879.1	chr7	30291705	30291905	+	1	NA	NA	NA	52	NM_001081114	76686	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	0.050000	0.606965	
mm_19603.1	chr2	102451667	102451867	-	1	NA	NA	NA	25	NM_010218	14221	Mm.29730	NM_010218	ENSMUSG00000075012	Fjx1	-	four jointed box 1 (Drosophila)	protein-coding	0.120000	0.731343	
mm_36815.1	chr4	104625369	104625569	-	1	NA	NA	NA	-140848	NM_133882	110382	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding	0.025000	0.462687	
mm_148460.1	chr19	4046967	4047167	+	1	NA	NA	NA	-4846	NM_181796	14869	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	0.025000	0.472637	
mm_643.1	chr1	40404867	40405067	+	1	NA	NA	NA	-24603	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.020000	0.517413	-33(TCTTTAAAACCA,+,0.00)
mm_130572.1	chr15	99458049	99458249	-	1	NA	NA	NA	-401	NM_001001884	380969	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	0.060000	0.552239	
mm_170367.1	chr1	85327220	85327420	-	1	NA	NA	NA	-56754	NM_001037909	620078	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik|OTTMUSG00000029174	RIKEN cDNA C130026I21 gene	protein-coding	0.005000	0.587065	
mm_37048.1	chr4	116017610	116017810	-	1	NA	NA	NA	192	NM_010173	14073	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	0.130000	0.716418	
mm_100972.1	chr11	6719940	6720140	-	1	NA	NA	NA	-3	NR_046025	626419	Mm.390334	NR_046025	ENSMUSG00000086808	Gm11981	OTTMUSG00000005129	predicted gene 11981	ncRNA	0.020000	0.552239	
mm_26707.1	chr3	157946957	157947157	+	1	NA	NA	NA	-409	NM_001013806	433667	Mm.265806	NM_001013806	ENSMUSG00000039988	Ankrd13c	AI505652|AU022220	ankyrin repeat domain 13c	protein-coding	0.055000	0.577114	
mm_152785.1	chr19	21446264	21446464	-	1	NA	NA	NA	26297	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.010000	0.338308	
mm_23737.1	chr3	69154928	69155128	+	1	NA	NA	NA	23795	NR_126533	381452	Mm.331067	NM_001243000	ENSMUSG00000094763	Gm1647	-	predicted gene 1647	ncRNA	0.000000	0.373134	
mm_91788.1	chr10	53348534	53348734	-	1	NA	NA	NA	10948	NM_001141927	18821	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0.010000	0.487562	
mm_68484.1	chr7	110982356	110982556	-	1	NA	NA	NA	5	NM_194464	17540	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0.010000	0.592040	
mm_91836.1	chr10	57516867	57517067	-	1	NA	NA	NA	15562	NM_019760	56442	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	0.000000	0.313433	
mm_31032.1	chr4	40948307	40948507	+	1	NA	NA	NA	-113	NM_001171739	12017	Mm.688	NM_009736	ENSMUSG00000028416	Bag1	BAG-1|Rap46	BCL2-associated athanogene 1	protein-coding	0.070000	0.641791	
mm_157864.1	chrX	75130854	75131054	-	1	NA	NA	NA	62	NM_008621	17524	Mm.391267	NM_008621	ENSMUSG00000031402	Mpp1	55kDa|C130070C03Rik|p55	membrane protein, palmitoylated	protein-coding	0.060000	0.636816	
mm_171962.1	chr5	84583592	84583792	-	1	NA	NA	NA	-166310	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.015000	0.492537	-38(CCCCTTATAAGC,-,0.00),-36(CCTTATAAGCAC,+,0.00)
mm_124233.1	chr14	101462996	101463196	-	1	NA	NA	NA	146095	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.035000	0.552239	
mm_96109.1	chr11	60553662	60553862	+	1	NA	NA	NA	16079	NM_172943	268420	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.025000	0.512438	
mm_84752.1	chr9	75559489	75559689	-	1	NA	NA	NA	68	NM_016963	50875	Mm.38445	NM_016963	ENSMUSG00000058587	Tmod3	U-Tmod|UTMOD	tropomodulin 3	protein-coding	0.090000	0.646766	
mm_103953.1	chr11	84069030	84069230	-	1	NA	NA	NA	-773	NM_019819	56405	Mm.240885	NM_019819	ENSMUSG00000018648	Dusp14	1110014C10Rik|2310042C07Rik|D11Ertd395e|MKP-L|Mkp6	dual specificity phosphatase 14	protein-coding	0.035000	0.527363	
mm_14114.1	chr2	125866153	125866353	+	1	NA	NA	NA	30	NM_001291002	69976	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	0.030000	0.582090	
mm_80865.1	chr9	98509573	98509773	+	1	NA	NA	NA	19136	NM_009034	19660	Mm.12825	NM_009034	ENSMUSG00000032454	Rbp2	Crbp-2|CrbpII|Rbp-2	retinol binding protein 2, cellular	protein-coding	0.005000	0.532338	24(GTGTATAAAAGG,-,0.00)
mm_58193.1	chr6	143075739	143075939	-	1	NA	NA	NA	24313	NM_001286578	74741	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.015000	0.497512	-4(GCCTCTAAATAC,-,0.00)
mm_98177.1	chr11	87756827	87757027	+	1	NA	NA	NA	28	NR_106176	102466883		NR_106176	ENSMUSG00000065420	Mir142b	Gm27750|mmu-mir-142b	microRNA 142b	ncRNA	0.040000	0.557214	
mm_117935.1	chr13	99434411	99434611	-	1	NA	NA	NA	-21685	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.452736	
mm_73237.1	chr8	104142752	104142952	+	1	NA	NA	NA	-27661	NM_001141924	65115	Mm.41849	NM_001141922	ENSMUSG00000031872	Bean1	Bean	brain expressed, associated with Nedd4, 1	protein-coding	0.060000	0.562189	
mm_88000.1	chr10	67002779	67002979	+	1	NA	NA	NA	-2196	NR_110511	102634101	Mm.445258	NR_110511		Gm31763	-	predicted gene, 31763	ncRNA	0.065000	0.666667	
mm_129951.1	chr15	85036834	85037034	-	1	NA	NA	NA	-128	NM_133750	73225	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0.095000	0.636816	
mm_129379.1	chr15	78173837	78174037	-	1	NA	NA	NA	171	NM_025931	67042	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	0.045000	0.636816	
mm_140381.1	chr17	87107594	87107794	+	1	NA	NA	NA	15	NM_019654	56468	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0.135000	0.800995	
mm_59932.1	chr7	30423509	30423709	+	1	NA	NA	NA	305	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.010000	0.512438	
mm_22278.1	chr2	179963779	179963979	-	1	NA	NA	NA	12767	NM_001081092	228980	Mm.235542	NM_001081092	ENSMUSG00000039117	Taf4	135kDa|AI450312|TAFII130|TAFII135|Taf2c1|Taf4a	TATA-box binding protein associated factor 4	protein-coding	0.015000	0.492537	
mm_86919.1	chr10	23851401	23851601	+	1	NA	NA	NA	39	NM_011979	26464	Mm.27334	NM_011979	ENSMUSG00000020010	Vnn3	-	vanin 3	protein-coding	0.015000	0.393035	
mm_108414.1	chr12	81928064	81928264	+	1	NA	NA	NA	68134	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	0.025000	0.497512	-59(GCATATATGCCC,+,0.00)
mm_42178.1	chr5	112261803	112262003	+	1	NA	NA	NA	6083	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.005000	0.427861	
mm_21785.1	chr2	164854917	164855117	-	1	NA	NA	NA	2691	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.035000	0.601990	
mm_17715.1	chr2	32385989	32386189	-	1	NA	NA	NA	1650	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.015000	0.557214	
mm_105549.1	chr11	106382483	106382683	-	1	NA	NA	NA	198	NM_010494	15896	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.015000	0.542289	
mm_50635.1	chr6	51329700	51329900	+	1	NA	NA	NA	-49910	NR_110455	625167	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	0.015000	0.527363	
mm_21280.1	chr2	156943325	156943525	-	1	NA	NA	NA	48686	NM_013865	29812	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0.005000	0.427861	
mm_49167.1	chr6	14608328	14608528	+	1	NA	NA	NA	146846	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	0.000000	0.412935	81(CTTTTAATAGAA,+,0.00)
mm_47419.1	chr5	123140621	123140821	-	1	NA	NA	NA	-1472	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.005000	0.298507	
mm_77804.1	chr9	3035628	3035828	+	1	NA	NA	NA	3015	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.363184	
mm_126352.1	chr15	79927767	79927967	+	1	NA	NA	NA	4779	NM_144811	52609	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	0.090000	0.661692	
mm_128119.1	chr15	30173394	30173594	-	1	NA	NA	NA	901	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.060000	0.582090	34(CCCTATATACGC,+,0.00)
mm_38818.1	chr4	148626639	148626839	-	1	NA	NA	NA	257	NR_027864	230908	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	0.090000	0.676617	
mm_22054.1	chr2	168515167	168515367	-	1	NA	NA	NA	75098	NM_001291178	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.000000	0.482587	
mm_79623.1	chr9	59288744	59288944	+	1	NA	NA	NA	-2728	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.010000	0.383085	1(CCTTTAAAGTTC,+,0.00)
mm_74771.1	chr8	21326918	21327118	-	1	NA	NA	NA	2	NM_007844	13218	Mm.304264	NM_007844	ENSMUSG00000074437	Defa29	2010300L12Rik|2010319H24Rik|CRS1C|CRS1C-2|CRS1C-4|CRS1C-5|Defa-rs1|Defcr-rs1	defensin, alpha, 29	protein-coding	0.010000	0.537313	-34(CCCTATAAATGC,+,0.00),-34(CCCTATAAATGC,-,0.00)
mm_109246.1	chr12	109453103	109453303	+	1	NA	NA	NA	-252	NM_001190704	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.100000	0.641791	
mm_74893.1	chr8	25104699	25104899	-	1	NA	NA	NA	-2988	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.020000	0.507463	
mm_143287.1	chr17	65864627	65864827	-	1	NA	NA	NA	20196	NM_001198949	19765	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.005000	0.472637	
mm_62586.1	chr7	105569286	105569486	+	1	NA	NA	NA	-68	NM_001253887	11785	Mm.38469	NM_009685	ENSMUSG00000037032	Apbb1	Fe65|Rir	amyloid beta (A4) precursor protein-binding, family B, member 1	protein-coding	0.020000	0.567164	
mm_98916.1	chr11	98248218	98248418	+	1	NA	NA	NA	-14288	NR_039579	100628613		NR_039579	ENSMUSG00000093176	Mir5119	mmu-mir-5119|mu-mir-5119	microRNA 5119	ncRNA	0.005000	0.368159	
mm_158496.1	chrX	142366410	142366610	-	1	NA	NA	NA	24025	NM_001033600	50790	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	0.010000	0.383085	
mm_31630.1	chr4	59287306	59287506	+	1	NA	NA	NA	27355	NR_105031	101055769	Mm.421401	NR_105031		Gm12596	OTTMUSG00000007649	predicted gene 12596	ncRNA	0.000000	0.432836	-54(GCATATATAAAG,-,0.00),-33(GGCCTTAAAGGA,-,0.00)
mm_65568.1	chr7	27178818	27179018	-	1	NA	NA	NA	-35	NM_029391	19342	Mm.482114	NM_029391	ENSMUSG00000053291	Rab4b	1500031G17Rik	RAB4B, member RAS oncogene family	protein-coding	0.095000	0.681592	
mm_55617.1	chr6	72140396	72140596	-	1	NA	NA	NA	-17299	NR_045165	71265	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.030000	0.542289	
mm_94217.1	chr11	3193400	3193600	+	1	NA	NA	NA	-37	NM_030207	78887	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.085000	0.621891	
mm_164788.1	chr18	12183769	12183969	+	1	NA	NA	NA	15139	NM_029623	76482	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1	RIKEN cDNA 3110002H16 gene	protein-coding	0.010000	0.507463	
mm_81076.1	chr9	106223433	106223633	+	1	NA	NA	NA	935	NM_031178	81897	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	0.010000	0.567164	
mm_128459.1	chr15	50795216	50795416	-	1	NA	NA	NA	93733	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.333333	
mm_160572.1	chr9	57628580	57628780	-	1	NA	NA	NA	-7906	NM_199222	235416	Mm.295630	NM_199222	ENSMUSG00000056271	Lman1l	BC020188|slamp	lectin, mannose-binding 1 like	protein-coding	0.025000	0.601990	
mm_78240.1	chr9	21625889	21626089	+	1	NA	NA	NA	9820	NM_001174078	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.010000	0.482587	
mm_125474.1	chr15	54410715	54410915	+	1	NA	NA	NA	41	NM_173422	239447	Mm.82400	NM_173422	ENSMUSG00000038591	Colec10	CL-L1	collectin sub-family member 10	protein-coding	0.015000	0.437811	
mm_103732.1	chr11	79962286	79962486	-	1	NA	NA	NA	1	NM_144826	216987	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.070000	0.552239	-68(CGCTAGAAAAGA,-,0.00)
mm_79780.1	chr9	62858012	62858212	+	1	NA	NA	NA	8	NM_138304	75600	Mm.440576	NM_138304	ENSMUSG00000032246	Calml4	2010002G05Rik	calmodulin-like 4	protein-coding	0.040000	0.592040	
mm_102381.1	chr11	58889620	58889820	-	1	NA	NA	NA	14505	NM_011758	22698	Mm.127646	NM_011758	ENSMUSG00000037001	Zfp39	CTfin33|Zfp-39	zinc finger protein 39	protein-coding	0.010000	0.492537	
mm_132009.1	chr16	25842460	25842660	+	1	NA	NA	NA	40644	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.010000	0.368159	
mm_130685.1	chr15	100681802	100682002	-	1	NA	NA	NA	6018	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.015000	0.537313	
mm_113454.1	chr13	35853462	35853662	+	1	NA	NA	NA	52785	NM_145938	208366	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	0.010000	0.492537	
mm_80414.1	chr9	77784555	77784755	+	1	NA	NA	NA	30120	NM_010295	14629	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.010000	0.407960	
mm_50442.1	chr6	48872849	48873049	+	1	NA	NA	NA	-22306	NM_029638	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.030000	0.467662	
mm_108678.1	chr12	86679923	86680123	+	1	NA	NA	NA	1323	NM_177354	238328	Mm.216101	NM_177354	ENSMUSG00000021256	Vash1	AI834978|D930046M13Rik|G630009D10Rik	vasohibin 1	protein-coding	0.040000	0.636816	
mm_110420.1	chr12	46818019	46818219	-	1	NA	NA	NA	656	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.050000	0.452736	
mm_20697.1	chr2	132880777	132880977	-	1	NA	NA	NA	-15	NM_177303	320974	Mm.357342	NM_177303	ENSMUSG00000043110	Lrrn4	B430119L13Rik|Nlrr4	leucine rich repeat neuronal 4	protein-coding	0.025000	0.587065	41(GGACCTAAAAGG,-,0.00)
mm_165700.1	chr3	95137835	95138035	+	1	NA	NA	NA	1251	NR_106201	102466888		NR_106201	ENSMUSG00000098931	Mir8099-2	Gm27692|mmu-mir-8099-2	microRNA 8099-2	ncRNA	0.015000	0.577114	
mm_80538.1	chr9	80308096	80308296	+	1	NA	NA	NA	143162	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.015000	0.363184	14(GACTTTTTAAAG,-,0.00),16(CTTTTTAAAGGA,+,0.00)
mm_30074.1	chr3	137981433	137981633	-	1	NA	NA	NA	16	NM_011932	26377	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.035000	0.616915	
mm_114467.1	chr13	67779626	67779826	+	1	NA	NA	NA	33	NM_028402	72958	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	0.030000	0.472637	
mm_98873.1	chr11	97799585	97799785	+	1	NA	NA	NA	13	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.105000	0.696517	
mm_145346.1	chr18	56470957	56471157	+	1	NA	NA	NA	38925	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.010000	0.482587	
mm_146386.1	chr18	82692459	82692659	+	1	NA	NA	NA	175	NM_177832	329002	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.215000	0.860697	
mm_129914.1	chr15	84182966	84183166	-	1	NA	NA	NA	-9167	NM_178614	68653	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0.050000	0.557214	
mm_90800.1	chr10	7663177	7663377	-	1	NA	NA	NA	-94	NR_030698	320642	Mm.398806	NR_030698		A630066F11Rik	-	RIKEN cDNA A630066F11 gene	ncRNA	0.135000	0.746269	
mm_148740.1	chr19	5952535	5952735	+	1	NA	NA	NA	11571	NM_001164057	18969	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0.020000	0.547264	
mm_118392.1	chr13	118658647	118658847	-	1	NA	NA	NA	-4	NR_131153	100038690	Mm.384983	NR_131153		Gm10732	ENSMUSG00000074638	predicted gene 10732	ncRNA	0.010000	0.383085	
mm_164930.1	chr18	81117713	81117913	+	1	NA	NA	NA	-131235	NM_178280	20689	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	sal-like 3 (Drosophila)	protein-coding	0.015000	0.577114	
mm_80054.1	chr9	69340130	69340330	+	1	NA	NA	NA	24017	NR_136934	102642202	Mm.415363	NR_136934	ENSMUSG00000086648	Gm15511	OTTMUSG00000023029	predicted gene 15511	ncRNA	0.005000	0.353234	-33(TAGCATATAAGG,-,0.00)
mm_148095.1	chr18	73816423	73816623	-	1	NA	NA	NA	-1131	NM_145494	107029	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	0.020000	0.437811	
mm_26090.1	chr3	136722198	136722398	+	1	NA	NA	NA	52232	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.005000	0.308458	
mm_68838.1	chr7	126351455	126351655	-	1	NA	NA	NA	16490	NR_106025	102466797		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.015000	0.512438	
mm_111245.1	chr12	84829982	84830182	-	1	NA	NA	NA	-45720	NR_028577	100303738	Mm.479389	NR_028577		D030025P21Rik	-	RIKEN cDNA D030025P21 gene	ncRNA	0.040000	0.636816	
mm_16191.1	chr2	172977758	172977958	+	1	NA	NA	NA	-1984	NM_012046	26972	Mm.23495	NM_012046	ENSMUSG00000005883	Spo11	AI449549|Spo11a|Spo11b	SPO11 meiotic protein covalently bound to DSB	protein-coding	0.015000	0.522388	-34(GGACATAAAAGG,-,0.00)
mm_26741.1	chr3	6785386	6785586	-	1	NA	NA	NA	-165043	NM_027048	69347	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	0.010000	0.308458	
mm_138373.1	chr17	35001475	35001675	+	1	NA	NA	NA	668	NM_011690	22321	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.075000	0.731343	
mm_54111.1	chr6	17171500	17171700	-	1	NA	NA	NA	-26151	NR_102305	319682	Mm.136046	NR_102304	ENSMUSG00000085171	D830026I12Rik	-	RIKEN cDNA D830026I12 gene	ncRNA	0.030000	0.517413	
mm_61190.1	chr7	63896286	63896486	+	1	NA	NA	NA	-20471	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.025000	0.601990	
mm_53509.1	chr6	135381963	135382163	+	1	NA	NA	NA	14570	NM_001288627	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.005000	0.402985	
mm_15345.1	chr2	156065633	156065833	+	1	NA	NA	NA	520	NM_139151	245865	Mm.330713	NM_139151	ENSMUSG00000038180	Spag4	1700041K21Rik|MNCb-0953|Sun4|mKIAA4118	sperm associated antigen 4	protein-coding	0.140000	0.800995	
mm_126048.1	chr15	76905773	76905973	+	1	NA	NA	NA	1802	NM_012053	26961	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0.015000	0.517413	
mm_15989.1	chr2	167015210	167015410	+	1	NA	NA	NA	-3	NM_153065	228889	Mm.295031	NM_153065	ENSMUSG00000017999	Ddx27	C86129	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	protein-coding	0.155000	0.676617	
mm_58636.1	chr7	5097490	5097690	+	1	NA	NA	NA	17355	NM_001252454	13854	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0.025000	0.606965	
mm_61369.1	chr7	69909662	69909862	+	1	NA	NA	NA	413668	NR_045940	73796	Mm.410832	NR_045940	ENSMUSG00000108885	4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA	0.005000	0.507463	
mm_51747.1	chr6	87379189	87379389	+	1	NA	NA	NA	5924	NM_025467	66284	Mm.46446	NM_025467	ENSMUSG00000030049	Gkn2	1810036H07Rik|Bricd1b	gastrokine 2	protein-coding	0.005000	0.427861	8(CCTTTAAGATGG,+,0.00)
mm_114800.1	chr13	90101725	90101925	+	1	NA	NA	NA	12158	NM_025335	66074	Mm.241387	NM_025335	ENSMUSG00000012422	Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|ENSMUSG00000060669|Gm10085|Tmem167a	transmembrane protein 167	protein-coding	0.000000	0.323383	32(AACTATAAATGC,-,0.00)
mm_140904.1	chr17	24150819	24151019	-	1	NA	NA	NA	3	NM_001286662	18607	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	0.010000	0.527363	
mm_98602.1	chr11	95831267	95831467	+	1	NA	NA	NA	6867	NM_153104	237928	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.045000	0.557214	
mm_168363.1	chr1	11624587	11624787	-	1	NA	NA	NA	210582	NM_001160371	320492	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding	0.055000	0.507463	
mm_42281.1	chr5	114211947	114212147	+	1	NA	NA	NA	46529	NM_133904	100705	Mm.81793	NM_133904	ENSMUSG00000042010	Acacb	AI597064|AW743042|Acc2|Accb	acetyl-Coenzyme A carboxylase beta	protein-coding	0.015000	0.417910	
mm_73551.1	chr8	108957186	108957386	+	1	NA	NA	NA	20426	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.015000	0.268657	
mm_132734.1	chr16	43807299	43807499	+	1	NA	NA	NA	45178	NM_007877	13490	Mm.439735	NM_007877	ENSMUSG00000022705	Drd3	D3R	dopamine receptor D3	protein-coding	0.040000	0.577114	
mm_109504.1	chr12	111452072	111452272	+	1	NA	NA	NA	9511	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.000000	0.467662	
mm_112681.1	chr13	16028747	16028947	+	1	NA	NA	NA	16996	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.348259	
mm_113162.1	chr13	24803607	24803807	+	1	NA	NA	NA	2050	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.000000	0.358209	
mm_100653.1	chr11	3156243	3156443	-	1	NA	NA	NA	32322	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.005000	0.378109	
mm_136556.1	chr17	3114909	3115109	+	1	NA	NA	NA	37	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.120000	0.716418	
mm_31239.1	chr4	44756477	44756677	+	1	NA	NA	NA	18	NM_138590	319885	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	0.090000	0.592040	
mm_144109.1	chr18	4322570	4322770	+	1	NA	NA	NA	30283	NM_007746	26410	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.000000	0.323383	
mm_98135.1	chr11	87566572	87566772	+	1	NA	NA	NA	-11717	NM_001284398	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding	0.005000	0.417910	-30(CCTTTTATGACA,+,0.00)
mm_143310.1	chr17	66076726	66076926	-	1	NA	NA	NA	220	NM_001025572	106585	Mm.34706	NM_001025572	ENSMUSG00000034647	Ankrd12	2900001A12Rik|AI447928|ANCO-2|AV347965|GAC-1|mKIAA0874	ankyrin repeat domain 12	protein-coding	0.085000	0.731343	
mm_31353.1	chr4	47011153	47011353	+	1	NA	NA	NA	-19539	NM_001081141	242425	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	0.015000	0.542289	
mm_11282.1	chr2	30066340	30066540	+	1	NA	NA	NA	-34	NM_001204875	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.125000	0.771144	
mm_50669.1	chr6	51537356	51537556	+	1	NA	NA	NA	-7067	NM_028035	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.015000	0.462687	
mm_95235.1	chr11	44617194	44617394	+	1	NA	NA	NA	-806	NM_001290711	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.035000	0.532338	
mm_149704.1	chr19	21419223	21419423	+	1	NA	NA	NA	53338	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.010000	0.383085	
mm_166675.1	chr6	97148342	97148542	+	1	NA	NA	NA	441	NM_175313	101351	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	0.045000	0.592040	
mm_60016.1	chr7	30764696	30764896	+	1	NA	NA	NA	1040	NM_001166174	73712	Mm.30138	NM_028618	ENSMUSG00000060962	Dmkn	1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36	dermokine	protein-coding	0.015000	0.557214	
mm_114026.1	chr13	52635865	52636065	+	1	NA	NA	NA	39083	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.005000	0.432836	
mm_151726.1	chr19	4867893	4868093	-	1	NA	NA	NA	9916	NM_013456	11474	Mm.5316	NM_013456	ENSMUSG00000006457	Actn3	-	actinin alpha 3	protein-coding	0.050000	0.611940	
mm_87441.1	chr10	51481038	51481238	+	1	NA	NA	NA	526	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.010000	0.492537	
mm_16094.1	chr2	168978142	168978342	+	1	NA	NA	NA	-27	NR_040326	75508	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.040000	0.552239	
mm_69858.1	chr7	141434378	141434578	-	1	NA	NA	NA	116	NM_001177576	68267	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0.025000	0.636816	
mm_140061.1	chr17	74670231	74670431	+	1	NA	NA	NA	-47419	NM_152817	74196	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0.060000	0.636816	
mm_169397.1	chr14	45713238	45713438	-	1	NA	NA	NA	-55195	NM_001042719	114874	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	0.035000	0.517413	
mm_71991.1	chr8	70616881	70617081	+	1	NA	NA	NA	137	NM_153074	211228	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0.055000	0.582090	
mm_94213.1	chr11	3147468	3147668	+	1	NA	NA	NA	23547	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.010000	0.492537	
mm_123249.1	chr14	60784480	60784680	-	1	NA	NA	NA	14	NR_040642	70478	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0.105000	0.631841	
mm_59800.1	chr7	29071505	29071705	+	1	NA	NA	NA	12089	NR_035489	100316710		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	0.050000	0.597015	
mm_88769.1	chr10	80335850	80336050	+	1	NA	NA	NA	5805	NM_139292	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.030000	0.582090	
mm_1764.1	chr1	75546547	75546747	+	1	NA	NA	NA	381	NM_009208	20536	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	0.090000	0.716418	
mm_110616.1	chr12	56692817	56693017	-	1	NA	NA	NA	-2554	NM_011041	18511	Mm.5035	NM_011041	ENSMUSG00000001497	Pax9	Pax-9	paired box 9	protein-coding	0.020000	0.572139	
mm_84271.1	chr9	62794836	62795036	-	1	NA	NA	NA	16712	NM_010193	14155	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.000000	0.338308	
mm_41631.1	chr5	97048702	97048902	+	1	NA	NA	NA	51113	NM_080708	140780	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.000000	0.373134	-69(TTCCTTAAAAGC,-,0.00),-67(CCTTAAAAGCAG,+,0.00)
mm_33347.1	chr4	129335519	129335719	+	1	NA	NA	NA	-249	NM_009030	19646	Mm.12145	NM_009030	ENSMUSG00000057236	Rbbp4	RBAP48|mRbAp48	retinoblastoma binding protein 4	protein-coding	0.080000	0.601990	
mm_7886.1	chr1	133118200	133118400	-	1	NA	NA	NA	-12866	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.005000	0.472637	
mm_151578.1	chr19	61166876	61167076	+	1	NA	NA	NA	9333	NM_001177513	633057	Mm.426097	NM_001177513	ENSMUSG00000094649	Gm7102	EG633057	predicted gene 7102	protein-coding	0.020000	0.363184	
mm_123873.1	chr14	72602874	72603074	-	1	NA	NA	NA	107029	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.035000	0.388060	
mm_139981.1	chr17	72836558	72836758	+	1	NA	NA	NA	-46	NM_027166	383295	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee-like 5 (Drosophila)	protein-coding	0.080000	0.686567	
mm_36379.1	chr4	76854384	76854584	-	1	NA	NA	NA	1357411	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.512438	
mm_135381.1	chr16	44139601	44139801	-	1	NA	NA	NA	-90	NM_001347239	72117	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	0.100000	0.681592	
mm_87280.1	chr10	41959028	41959228	+	1	NA	NA	NA	59254	NM_001034858	213402	Mm.211320	NM_001034858	ENSMUSG00000071324	Armc2	2610018I05Rik	armadillo repeat containing 2	protein-coding	0.020000	0.527363	
mm_62811.1	chr7	113218336	113218536	+	1	NA	NA	NA	10971	NM_007489	11865	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0.010000	0.437811	
mm_104207.1	chr11	88048974	88049174	-	1	NA	NA	NA	1701	NM_173374	110809	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	0.050000	0.472637	
mm_71152.1	chr8	39636099	39636299	+	1	NA	NA	NA	6479	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.015000	0.393035	
mm_54200.1	chr6	24664839	24665039	-	1	NA	NA	NA	56	NM_001167745	73178	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0.135000	0.736318	
mm_54647.1	chr6	38876099	38876299	-	1	NA	NA	NA	-9	NM_001294143	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.160000	0.825871	
mm_101093.1	chr11	11882194	11882394	-	1	NA	NA	NA	8114	NM_016672	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.015000	0.467662	
mm_85789.1	chr9	109095690	109095890	-	1	NA	NA	NA	354	NM_172775	235611	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.110000	0.701493	
mm_108345.1	chr12	80463072	80463272	+	1	NA	NA	NA	77	NM_133798	97827	Mm.206631	NM_133798	ENSMUSG00000032705	Exd2	4930539P14Rik|C85658|Exdl2	exonuclease 3'-5' domain containing 2	protein-coding	0.080000	0.656716	10(GCTTTTATGCAT,+,0.00)
mm_117081.1	chr13	59640084	59640284	-	1	NA	NA	NA	35600	NM_001035122	105348	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0.035000	0.621891	
mm_27084.1	chr3	30013139	30013339	-	1	NA	NA	NA	-35	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.045000	0.527363	61(CCCCTTTAAAGA,-,0.00),62(CCCTTTAAAGAG,+,0.00),62(CCCTTTAAAGAG,-,0.00),64(CTTTAAAGAGAC,+,0.00)
mm_21224.1	chr2	155834753	155834953	-	1	NA	NA	NA	1	NM_027788	71405	Mm.260918	NM_027788	ENSMUSG00000074647	Fam83c	5530400B04Rik	family with sequence similarity 83, member C	protein-coding	0.015000	0.601990	
mm_161049.1	chr12	49385213	49385413	+	1	NA	NA	NA	2306	NM_008241	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.120000	0.691542	1(GCCTTTAAGCGC,+,0.00)
mm_108862.1	chr12	98920493	98920693	+	1	NA	NA	NA	19	NM_029553	76260	Mm.282660	NM_029553	ENSMUSG00000021013	Ttc8	0610012F22Rik|AV001447|BBS8	tetratricopeptide repeat domain 8	protein-coding	0.080000	0.686567	
mm_104798.1	chr11	98773921	98774121	-	1	NA	NA	NA	1356	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.080000	0.641791	
mm_63778.1	chr7	131560327	131560527	+	1	NA	NA	NA	57	NM_009774	12237	Mm.927	NM_009774	ENSMUSG00000066979	Bub3	AU019800|AU021329|AU043350|AW146323|C78067	BUB3 mitotic checkpoint protein	protein-coding	0.095000	0.636816	
mm_47740.1	chr5	130254150	130254350	-	1	NA	NA	NA	1280	NM_023248	66711	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	Shwachman-Bodian-Diamond syndrome homolog (human)	protein-coding	0.000000	0.378109	
mm_154337.1	chrM	4134	4334	+	1	NA	NA	NA	NA	NA									0.015000	0.378109	
mm_119853.1	chr14	54441074	54441274	+	1	NA	NA	NA	9576	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.010000	0.363184	
mm_148675.1	chr19	5638125	5638325	+	1	NA	NA	NA	735	NM_009045	19697	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.015000	0.512438	
mm_26012.1	chr3	135347916	135348116	+	1	NA	NA	NA	-21	NM_028946	74446	Mm.85000	NM_028946	ENSMUSG00000050150	Slc9b1	1700094G20Rik|4933424B12Rik|4933425K02Rik|Nhedc1|mtsNHE	solute carrier family 9, subfamily B (NHA1, cation proton antiporter 1), member 1	protein-coding	0.055000	0.532338	-47(CCATTAAGAGCA,+,0.00)
mm_43163.1	chr5	127030729	127030929	+	1	NA	NA	NA	40	NR_040685	71247	Mm.399586	NR_040685	ENSMUSG00000105490	4933438B17Rik	-	RIKEN cDNA 4933438B17 gene	ncRNA	0.020000	0.487562	
mm_78187.1	chr9	21243288	21243488	+	1	NA	NA	NA	-4056	NM_001110307	50868	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.005000	0.502488	
mm_61793.1	chr7	83892044	83892244	+	1	NA	NA	NA	144	NM_023403	67943	Mm.117365	NM_023403	ENSMUSG00000038503	Mesdc2	2210015O11Rik|AW537813|mKIAA0081|mesd|msd	mesoderm development candidate 2	protein-coding	0.100000	0.681592	
mm_118163.1	chr13	105294254	105294454	-	1	NA	NA	NA	-1340	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.140000	0.746269	
mm_11560.1	chr2	32775719	32775919	+	1	NA	NA	NA	-2	NM_178595	329384	Mm.268037	NM_178595	ENSMUSG00000053746	Ptrh1	2210013M04Rik|AW046744	peptidyl-tRNA hydrolase 1 homolog	protein-coding	0.075000	0.626866	
mm_104126.1	chr11	86757358	86757558	-	1	NA	NA	NA	34	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.075000	0.691542	
mm_140356.1	chr17	86831334	86831534	+	1	NA	NA	NA	77570	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.005000	0.402985	
mm_96886.1	chr11	70435612	70435812	+	1	NA	NA	NA	-2543	NR_106064	102465670		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.015000	0.537313	
mm_143155.1	chr17	57223215	57223415	-	1	NA	NA	NA	4821	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.020000	0.557214	
mm_114932.1	chr13	95765245	95765445	+	1	NA	NA	NA	68425	NM_010170	14064	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	0.025000	0.517413	
mm_18698.1	chr2	71546391	71546591	-	1	NA	NA	NA	263	NM_010054	13392	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0.075000	0.636816	
mm_169301.1	chr14	102143801	102144001	+	1	NA	NA	NA	303278	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.055000	0.626866	
mm_86391.1	chr9	123957706	123957906	-	1	NA	NA	NA	10886	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.005000	0.462687	-35(CTGTATAAAAGG,-,0.00)
mm_43751.1	chr5	140419326	140419526	+	1	NA	NA	NA	121	NM_133916	27979	Mm.21671	NM_133916	ENSMUSG00000056076	Eif3b	AL033316|AL033334|AL033369|AW208965|D5Wsu45e|EIF3-ETA|EIF3-P110|EIF3-P116|Eif3s9|PRT1	eukaryotic translation initiation factor 3, subunit B	protein-coding	0.145000	0.756219	
mm_80995.1	chr9	103423025	103423225	+	1	NA	NA	NA	-453	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.035000	0.527363	
mm_45756.1	chr5	86803900	86804100	-	1	NA	NA	NA	-266	NM_001347375	231386	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.065000	0.522388	
mm_68630.1	chr7	118146898	118147098	-	1	NA	NA	NA	-17373	NM_019419	54208	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0.000000	0.427861	
mm_61752.1	chr7	82771123	82771323	+	1	NA	NA	NA	-15579	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.080000	0.691542	
mm_2582.1	chr1	118627847	118628047	+	1	NA	NA	NA	2	NM_023755	81879	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.100000	0.681592	-33(GCCTATAAAAGG,-,0.00)
mm_52605.1	chr6	117173500	117173700	+	1	NA	NA	NA	5065	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.025000	0.537313	
mm_88386.1	chr10	76452813	76453013	+	1	NA	NA	NA	3832	NM_029816	76964	Mm.472489	NM_029816	ENSMUSG00000009114	2610028H24Rik	ORF67	RIKEN cDNA 2610028H24 gene	protein-coding	0.010000	0.606965	
mm_33711.1	chr4	133816151	133816351	+	1	NA	NA	NA	58480	NM_001285506	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.025000	0.482587	
mm_159952.1	chr6	86085790	86085990	+	1	NA	NA	NA	7842	NM_001271859	11519	Mm.104155	NM_013458	ENSMUSG00000030000	Add2	2900072M03Rik|add97	adducin 2 (beta)	protein-coding	0.050000	0.592040	
mm_2399.1	chr1	93693628	93693828	+	1	NA	NA	NA	8153	NM_016778	51800	Mm.3295	NM_016778	ENSMUSG00000026278	Bok	matador|mtd	BCL2-related ovarian killer	protein-coding	0.005000	0.457711	
mm_26570.1	chr3	146602293	146602493	+	1	NA	NA	NA	5244	NM_009474	22262	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.010000	0.422886	
mm_112039.1	chr12	111670532	111670732	-	1	NA	NA	NA	1706	NM_021273	12709	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.070000	0.641791	
mm_66934.1	chr7	61576696	61576896	-	1	NA	NA	NA	38531	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.015000	0.402985	
mm_86417.1	chr10	3540139	3540339	+	1	NA	NA	NA	-40	NM_027391	70337	Mm.24153	NM_027391	ENSMUSG00000019762	Iyd	0610009A07Rik|AI265638|Dehal1	iodotyrosine deiodinase	protein-coding	0.020000	0.502488	
mm_116649.1	chr13	49183843	49184043	-	1	NA	NA	NA	-3604	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.015000	0.537313	
mm_23684.1	chr3	68633721	68633921	+	1	NA	NA	NA	-56823	NM_001159424	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.010000	0.393035	
mm_64781.1	chr7	5038339	5038539	-	1	NA	NA	NA	7	NM_001039532	654801	Mm.333548	NM_001039532	ENSMUSG00000043290	Zfp784	C730049F21Rik|Znf784	zinc finger protein 784	protein-coding	0.140000	0.726368	
mm_120808.1	chr14	75015919	75016119	+	1	NA	NA	NA	-8	NM_198642	271221	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.055000	0.537313	
mm_1128.1	chr1	60343230	60343430	+	1	NA	NA	NA	30	NM_001313721	77951	Mm.197640	NM_030013	ENSMUSG00000049439	Cyp20a1	A930011N14Rik|Cypm	cytochrome P450, family 20, subfamily a, polypeptide 1	protein-coding	0.130000	0.726368	
mm_78287.1	chr9	22188043	22188243	+	1	NA	NA	NA	-23	NM_001033813	619310	Mm.335016	NM_001033813	ENSMUSG00000074472	Zfp872	9530015I07Rik	zinc finger protein 872	protein-coding	0.080000	0.646766	
mm_128125.1	chr15	31336625	31336825	-	1	NA	NA	NA	31034	NM_001164441	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.010000	0.482587	
mm_130297.1	chr15	97013584	97013784	-	1	NA	NA	NA	42272	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.025000	0.407960	
mm_82241.1	chr9	4309368	4309568	-	1	NA	NA	NA	26	NR_136941	67618	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0.085000	0.631841	
mm_2676.1	chr1	127273530	127273730	+	1	NA	NA	NA	68644	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.020000	0.507463	-32(CGCTATAAATAG,-,0.00)
mm_6589.1	chr1	75264107	75264307	-	1	NA	NA	NA	1	NM_008985	19275	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	0.080000	0.691542	
mm_119867.1	chr14	54553953	54554153	+	1	NA	NA	NA	308	NM_145462	219072	Mm.202152	NM_145462	ENSMUSG00000022177	Haus4	9430093H08Rik|AU016300|D14Ertd500e	HAUS augmin-like complex, subunit 4	protein-coding	0.085000	0.626866	
mm_128076.1	chr15	27663459	27663659	-	1	NA	NA	NA	17983	NM_001242424	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.005000	0.447761	
mm_71632.1	chr8	57455962	57456162	+	1	NA	NA	NA	139	NM_009136	20284	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.005000	0.462687	
mm_137182.1	chr17	23816209	23816409	+	1	NA	NA	NA	12800	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.025000	0.452736	
mm_153924.1	chr19	47314699	47314899	-	1	NA	NA	NA	-41210	NR_105961	102466782		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.040000	0.587065	-33(TTCTATTTAAGG,-,0.00)
mm_3018.1	chr1	133363733	133363933	+	1	NA	NA	NA	261	NM_175443	214253	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	0.075000	0.711443	
mm_117569.1	chr13	85289009	85289209	-	1	NA	NA	NA	377	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.100000	0.666667	
mm_53717.1	chr6	143404549	143404749	+	1	NA	NA	NA	158761	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.005000	0.477612	
mm_144673.1	chr18	34624878	34625078	+	1	NA	NA	NA	42	NM_009004	19348	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	0.055000	0.557214	
mm_156164.1	chrX	130033423	130033623	+	1	NA	NA	NA	283781	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.010000	0.407960	77(CCACATATAGGC,+,0.00)
mm_155876.1	chrX	101447896	101448096	+	1	NA	NA	NA	-1113	NM_013712	26549	Mm.46232	NM_013712	ENSMUSG00000031312	Itgb1bp2	Chordc3	integrin beta 1 binding protein 2	protein-coding	0.000000	0.393035	
mm_164629.1	chr17	32811492	32811692	+	1	NA	NA	NA	-1661	NM_183177	240063	Mm.30675	NM_183177	ENSMUSG00000055202	Zfp811	BC052046	zinc finger protein 811	protein-coding	0.000000	0.462687	
mm_52745.1	chr6	120473681	120473881	+	1	NA	NA	NA	10584	NM_008359	16172	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.025000	0.582090	
mm_109259.1	chr12	109459908	109460108	+	1	NA	NA	NA	6553	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.060000	0.646766	
mm_121784.1	chr14	19976906	19977106	-	1	NA	NA	NA	243	NM_001038637	14702	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.035000	0.631841	
mm_40890.1	chr5	75151290	75151490	+	1	NA	NA	NA	-861	NR_144636	18595	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.055000	0.562189	
mm_139584.1	chr17	57223024	57223224	+	1	NA	NA	NA	5012	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.025000	0.597015	
mm_110833.1	chr12	72667847	72668047	-	1	NA	NA	NA	-3119	NM_025522	66375	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.015000	0.442786	
mm_44444.1	chr5	21664804	21665004	-	1	NA	NA	NA	18920	NM_026034	67211	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	0.000000	0.348259	
mm_102100.1	chr11	52360888	52361088	-	1	NA	NA	NA	126	NM_011694	22333	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.155000	0.741294	
mm_129878.1	chr15	83447829	83448029	-	1	NA	NA	NA	-15079	NM_001159510	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.015000	0.512438	
mm_102164.1	chr11	53805054	53805254	-	1	NA	NA	NA	34681	NM_001159396	16362	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.035000	0.557214	
mm_136992.1	chr17	17402627	17402827	+	1	NA	NA	NA	41	NM_025681	66643	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.005000	0.492537	
mm_171524.1	chr4	146610887	146611087	+	1	NA	NA	NA	-64114	NR_045468	67524	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	0.040000	0.502488	
mm_156004.1	chrX	106703782	106703982	+	1	NA	NA	NA	-100203	NM_001281859	58861	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	0.015000	0.407960	
mm_84948.1	chr9	83141082	83141282	-	1	NA	NA	NA	5425	NM_175074	94353	Mm.244426	NM_026122	ENSMUSG00000066456	Hmgn3	1110002A15Rik|6330514M13Rik|BB071015|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding	0.005000	0.477612	-34(CAGTATAAATGC,-,0.00)
mm_83794.1	chr9	52676702	52676902	-	1	NA	NA	NA	2635	NM_178906	330941	Mm.335160	NM_177907	ENSMUSG00000078307	AI593442	E130102D23	expressed sequence AI593442	protein-coding	0.010000	0.402985	
mm_32015.1	chr4	94751485	94751685	+	1	NA	NA	NA	12296	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	0.005000	0.323383	
mm_69528.1	chr7	135652164	135652364	-	1	NA	NA	NA	50	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.025000	0.497512	
mm_134730.1	chr16	22898964	22899164	-	1	NA	NA	NA	-4678	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.020000	0.582090	
mm_25054.1	chr3	98427683	98427883	+	1	NA	NA	NA	29248	NM_001111336	15495	Mm.14309	NM_008294	ENSMUSG00000095143	Hsd3b4	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	protein-coding	0.115000	0.731343	
mm_82800.1	chr9	29412557	29412757	-	1	NA	NA	NA	550472	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.130000	0.756219	
mm_21642.1	chr2	164333326	164333526	-	1	NA	NA	NA	661	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.045000	0.492537	
mm_4851.1	chr1	187215621	187215821	+	1	NA	NA	NA	210	NM_026367	67769	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding	0.130000	0.686567	
mm_99642.1	chr11	105292553	105292753	+	1	NA	NA	NA	7	NM_008626	17534	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0.075000	0.696517	
mm_110358.1	chr12	40037527	40037727	-	1	NA	NA	NA	-251	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.130000	0.751244	
mm_142180.1	chr17	36271743	36271943	-	1	NA	NA	NA	161	NM_024468	79263	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0.065000	0.621891	
mm_23779.1	chr3	79028339	79028539	+	1	NA	NA	NA	116448	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.025000	0.452736	
mm_98312.1	chr11	90035834	90036034	+	1	NA	NA	NA	5586	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.025000	0.432836	
mm_64573.1	chr7	144915017	144915217	+	1	NA	NA	NA	17	NM_001347537	72284	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	0.075000	0.567164	
mm_56768.1	chr6	116263950	116264150	-	1	NA	NA	NA	-169	NM_001309446	67492	Mm.272772	NM_001081317	ENSMUSG00000042213	Zfand4	Anubl1	zinc finger, AN1-type domain 4	protein-coding	0.085000	0.636816	
mm_139214.1	chr17	47728738	47728938	+	1	NA	NA	NA	1996	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.005000	0.477612	
mm_73838.1	chr8	117461014	117461214	+	1	NA	NA	NA	1849	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.030000	0.422886	
mm_7148.1	chr1	91398703	91398903	-	1	NA	NA	NA	-20	NM_023343	67444	Mm.337240	NM_023343	ENSMUSG00000026309	Ilkap	0710007A14Rik|1600009O09Rik|PP2C-DELTA	integrin-linked kinase-associated serine/threonine phosphatase 2C	protein-coding	0.155000	0.781095	
mm_160077.1	chr7	10446780	10446980	+	1	NA	NA	NA	91	NM_134229	171263	Mm.377216	NM_134229	ENSMUSG00000046716	Vmn1r67	V1re10	vomeronasal 1 receptor 67	protein-coding	0.000000	0.363184	
mm_42165.1	chr5	112259390	112259590	+	1	NA	NA	NA	3670	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.015000	0.522388	
mm_90389.1	chr10	127321810	127322010	+	1	NA	NA	NA	-54	NM_001285785	216445	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.010000	0.522388	
mm_102069.1	chr11	52258794	52258994	-	1	NA	NA	NA	23701	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.015000	0.626866	
mm_120406.1	chr14	65100603	65100803	+	1	NA	NA	NA	-2597	NM_018788	54616	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.020000	0.487562	
mm_73713.1	chr8	111701715	111701915	+	1	NA	NA	NA	-10805	NM_025583	66473	Mm.34374	NM_025583	ENSMUSG00000031957	Ctrb1	2200008D09Rik|AI504462|Ctrb|Prt-2	chymotrypsinogen B1	protein-coding	0.010000	0.542289	
mm_3184.1	chr1	135766149	135766349	+	1	NA	NA	NA	164	NM_013750	27280	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	0.145000	0.761194	
mm_5744.1	chr1	45925479	45925679	-	1	NA	NA	NA	15	NM_016917	53945	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.115000	0.716418	-36(CTCCCTATAAGC,-,0.00),-34(CCCTATAAGCCG,+,0.00)
mm_6840.1	chr1	84233289	84233489	-	1	NA	NA	NA	-14428	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.318408	
mm_97990.1	chr11	83964280	83964480	+	1	NA	NA	NA	-51	NM_194341	217030	Mm.82680	NM_194341	ENSMUSG00000034940	Synrg	Ap1gbp1|SYNG	synergin, gamma	protein-coding	0.115000	0.716418	
mm_163546.1	chr13	19337161	19337361	+	1	NA	NA	NA	58552	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.422886	
mm_100338.1	chr11	118393203	118393403	+	1	NA	NA	NA	8628	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.015000	0.542289	
mm_163473.1	chr12	103958766	103958966	-	1	NA	NA	NA	-1969	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	0.005000	0.597015	
mm_143452.1	chr17	70924881	70925081	-	1	NA	NA	NA	65535	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.020000	0.512438	
mm_6913.1	chr1	84839357	84839557	-	1	NA	NA	NA	-153	NM_133975	14897	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.120000	0.696517	
mm_135500.1	chr16	46496231	46496431	-	1	NA	NA	NA	636	NM_021496	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.120000	0.691542	
mm_137320.1	chr17	24895431	24895631	+	1	NA	NA	NA	411	NM_023260	79044	Mm.328851	NM_023260	ENSMUSG00000038880	Mrps34	0610007F04Rik|5330430D13Rik|AV001970|Tce2	mitochondrial ribosomal protein S34	protein-coding	0.055000	0.582090	
mm_22137.1	chr2	170497044	170497244	-	1	NA	NA	NA	1	NM_009996	13081	Mm.6575	NM_009996	ENSMUSG00000038567	Cyp24a1	24-OHase|CP24|Cyp24	cytochrome P450, family 24, subfamily a, polypeptide 1	protein-coding	0.045000	0.577114	
mm_27135.1	chr3	32398122	32398322	-	1	NA	NA	NA	-32557	NM_009517	22401	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0.035000	0.393035	
mm_158025.1	chrX	96166806	96167006	-	1	NA	NA	NA	70861	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.010000	0.477612	
mm_65391.1	chr7	25092488	25092688	-	1	NA	NA	NA	4587	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.020000	0.482587	
mm_140852.1	chr17	23683926	23684126	-	1	NA	NA	NA	0	NM_020293	56863	Mm.491368	NM_020293	ENSMUSG00000066720	Cldn9	nmf329	claudin 9	protein-coding	0.030000	0.567164	-32(GCCTTAAAACCC,+,0.00)
mm_143681.1	chr17	80062030	80062230	-	1	NA	NA	NA	138	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.125000	0.741294	
mm_48106.1	chr5	137072169	137072369	-	1	NA	NA	NA	3	NM_008871	18787	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.040000	0.582090	-34(TGGTATAAAGGG,-,0.00)
mm_57299.1	chr6	124464678	124464878	-	1	NA	NA	NA	6	NM_153508	232370	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.030000	0.587065	
mm_58820.1	chr7	16452928	16453128	+	1	NA	NA	NA	249	NM_026938	69094	Mm.29633	NM_026938	ENSMUSG00000019158	Tmem160	1810008O21Rik	transmembrane protein 160	protein-coding	0.145000	0.796020	
mm_6796.1	chr1	84150098	84150298	-	1	NA	NA	NA	68763	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.432836	
mm_121405.1	chr14	119298868	119299068	+	1	NA	NA	NA	160703	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.010000	0.447761	
mm_134024.1	chr16	4964094	4964294	-	1	NA	NA	NA	43	NM_028301	72615	Mm.290628	NM_028301	ENSMUSG00000022515	Anks3	2700067D09Rik|C81345|mKIAA1977	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding	0.095000	0.696517	
mm_164717.1	chr17	56121833	56122033	-	1	NA	NA	NA	13	NM_029796	76905	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0.005000	0.557214	-7(GACTATATAAAG,-,0.00),-5(CTATATAAAGCC,+,0.00)
mm_59255.1	chr7	24862333	24862533	+	1	NA	NA	NA	7258	NM_182785	232973	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	0.030000	0.542289	
mm_25455.1	chr3	108383911	108384111	+	1	NA	NA	NA	173	NM_019976	56742	Mm.389499	NM_019976	ENSMUSG00000068744	Psrc1	5430413I02Rik|AL033312|Dda3	proline/serine-rich coiled-coil 1	protein-coding	0.060000	0.562189	
mm_7012.1	chr1	86503337	86503537	-	1	NA	NA	NA	-23299	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.045000	0.661692	
mm_48844.1	chr5	149367046	149367246	-	1	NA	NA	NA	-44660	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.000000	0.482587	
mm_86968.1	chr10	25375144	25375344	+	1	NA	NA	NA	15446	NM_001199265	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.020000	0.552239	
mm_140039.1	chr17	74395551	74395751	+	1	NA	NA	NA	43	NM_144798	210148	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	0.090000	0.641791	
mm_115434.1	chr13	117271957	117272157	+	1	NA	NA	NA	51484	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.005000	0.308458	
mm_129055.1	chr15	75566533	75566733	-	1	NA	NA	NA	15	NM_001135689	23934	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	0.135000	0.761194	
mm_133.1	chr1	10056824	10057024	+	1	NA	NA	NA	18706	NM_026493	211660	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	0.005000	0.383085	
mm_134867.1	chr16	28640962	28641162	-	1	NA	NA	NA	-41019	NR_030463	751543		NR_030463	ENSMUSG00000076064	Mir690	Mirn690|mir-690|mmu-mir-690	microRNA 690	ncRNA	0.005000	0.452736	
mm_76266.1	chr8	84042470	84042670	-	1	NA	NA	NA	5	NM_016671	50931	Mm.38386	NM_016671	ENSMUSG00000005465	Il27ra	CRL1|IL-27R|Tccr|WSX-1|Wsx1|zcytor1	interleukin 27 receptor, alpha	protein-coding	0.070000	0.636816	
mm_27694.1	chr3	66296635	66296835	-	1	NA	NA	NA	102	NM_145820	72789	Mm.443526	NM_028357	ENSMUSG00000027831	Veph1	2810471M23Rik|Veph	ventricular zone expressed PH domain-containing 1	protein-coding	0.040000	0.597015	
mm_69884.1	chr7	141636941	141637141	-	1	NA	NA	NA	16340	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.010000	0.442786	
mm_136956.1	chr17	15327048	15327248	+	1	NA	NA	NA	27313	NR_033511	100038481	Mm.387544	NR_033511		Gm10510	ENSMUSG00000073453	predicted gene 10510	ncRNA	0.000000	0.502488	
mm_116338.1	chr13	38178987	38179187	-	1	NA	NA	NA	-25852	NM_026382	67797	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	0.030000	0.492537	
mm_31717.1	chr4	62652368	62652568	+	1	NA	NA	NA	-21506	NM_001310706	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.010000	0.582090	
mm_8042.1	chr1	135277844	135278044	-	1	NA	NA	NA	6140	NM_145417	215615	Mm.291048	NM_145417	ENSMUSG00000041926	Rnpep	-	arginyl aminopeptidase (aminopeptidase B)	protein-coding	0.010000	0.417910	
mm_21166.1	chr2	154613335	154613535	-	1	NA	NA	NA	67	NM_199304	228807	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	0.165000	0.815920	
mm_91381.1	chr10	30618355	30618555	-	1	NA	NA	NA	-89	NM_025798	66847	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	0.105000	0.671642	-67(CCCTTTTAGAGG,-,0.00),-66(CCTTTTAGAGGC,+,0.00)
mm_15738.1	chr2	164237168	164237368	+	1	NA	NA	NA	1073	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.005000	0.402985	
mm_7021.1	chr1	86670472	86670672	-	1	NA	NA	NA	1	NM_010933	18159	Mm.12802	NM_010933	ENSMUSG00000026241	Nppc	CNP|lbab	natriuretic peptide type C	protein-coding	0.090000	0.671642	
mm_20088.1	chr2	120850278	120850478	-	1	NA	NA	NA	40	NM_001024857	140810	Mm.275698	NM_080788	ENSMUSG00000090100	Ttbk2	2610507N02Rik|AI326283|B930008N24Rik|TTK|Ttbk|Ttbk1|mKIAA0847	tau tubulin kinase 2	protein-coding	0.125000	0.761194	
mm_40039.1	chr5	33820308	33820508	+	1	NA	NA	NA	-22704	NM_175231	107823	Mm.19892	NM_175231	ENSMUSG00000057406	Whsc1	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|NSD2|Whsc1l|mKIAA1090	Wolf-Hirschhorn syndrome candidate 1 (human)	protein-coding	0.215000	0.830846	
mm_16532.1	chr2	181579227	181579427	+	1	NA	NA	NA	-205	NR_027290	100271841	Mm.438007	NR_027289	ENSMUSG00000010492	Uckl1os	Gm16119|OTTMUSG00000030649	uridine-cytidine kinase 1-like 1, opposite strand	ncRNA	0.010000	0.572139	
mm_59506.1	chr7	27560407	27560607	+	1	NA	NA	NA	31	NM_001122767	66367	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	0.020000	0.611940	
mm_129289.1	chr15	77163238	77163438	-	1	NA	NA	NA	-9526	NM_001286418	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.005000	0.407960	
mm_73009.1	chr8	93811202	93811402	+	1	NA	NA	NA	464	NM_001113384	14681	Mm.251445	NM_010308	ENSMUSG00000031748	Gnao1	AW050213|Galphao|Gnao|alphaO	guanine nucleotide binding protein, alpha O	protein-coding	0.070000	0.656716	
mm_62328.1	chr7	100472920	100473120	+	1	NA	NA	NA	29	NM_009464	22229	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.020000	0.572139	
mm_131196.1	chr16	8470685	8470885	+	1	NA	NA	NA	-28	NM_146247	239706	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	0.105000	0.691542	
mm_153326.1	chr19	38124242	38124442	-	1	NA	NA	NA	469	NM_011255	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.045000	0.557214	
mm_83563.1	chr9	46302982	46303182	-	1	NA	NA	NA	16904	NM_183104	74361	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding	0.005000	0.472637	
mm_45347.1	chr5	65858100	65858300	-	1	NA	NA	NA	-5369	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.025000	0.547264	
mm_55762.1	chr6	78466300	78466500	-	1	NA	NA	NA	2474	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.005000	0.432836	
mm_116608.1	chr13	48819627	48819827	-	1	NA	NA	NA	51158	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.015000	0.587065	
mm_95706.1	chr11	54446869	54447069	+	1	NA	NA	NA	8790	NM_173753	216742	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.000000	0.383085	
mm_41464.1	chr5	91027375	91027575	+	1	NA	NA	NA	-42	NM_053087	71920	Mm.197319	NM_053087	ENSMUSG00000035020	Epgn	2310069M11Rik|epigen	epithelial mitogen	protein-coding	0.020000	0.457711	
mm_67128.1	chr7	70366441	70366641	-	1	NA	NA	NA	205	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.015000	0.412935	-51(GTGTTTTTAAAG,-,0.00),-49(GTTTTTAAAGTC,+,0.00)
mm_73900.1	chr8	119441308	119441508	+	1	NA	NA	NA	4246	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.020000	0.582090	
mm_93119.1	chr10	91170414	91170614	-	1	NA	NA	NA	36	NM_001283048	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.045000	0.417910	
mm_32150.1	chr4	99909696	99909896	+	1	NA	NA	NA	-19655	NM_028132	72157	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.020000	0.338308	-8(AGGTATTAAAGC,-,0.00)
mm_121330.1	chr14	114948964	114949164	+	1	NA	NA	NA	-3116	NR_126548	74982		NR_126548		1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	0.035000	0.487562	
mm_45905.1	chr5	89209015	89209215	-	1	NA	NA	NA	248783	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.060000	0.522388	
mm_157676.1	chrX	59431728	59431928	-	1	NA	NA	NA	153744	NM_001290414	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding	0.005000	0.388060	
mm_162801.1	chr10	77215565	77215765	+	1	NA	NA	NA	43558	NR_026944	100169878	Mm.420901	NR_026944	ENSMUSG00000078444	Gm10941	ENSMUSG00000078444	predicted gene 10941	ncRNA	0.010000	0.606965	
mm_134750.1	chr16	23157111	23157311	-	1	NA	NA	NA	10675	NM_009605	11450	Mm.3969	NM_009605	ENSMUSG00000022878	Adipoq	30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1	adiponectin, C1Q and collagen domain containing	protein-coding	0.045000	0.542289	
mm_121042.1	chr14	80021326	80021526	+	1	NA	NA	NA	21124	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding	0.025000	0.432836	
mm_140228.1	chr17	83998447	83998647	+	1	NA	NA	NA	-5	NR_130994	78148	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.020000	0.592040	
mm_148182.1	chr18	78205849	78206049	-	1	NA	NA	NA	491	NM_001110274	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.015000	0.517413	
mm_171436.1	chr4	141053642	141053842	-	1	NA	NA	NA	-81	NM_172122	230872	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	0.025000	0.601990	
mm_159743.1	chr5	72580991	72581191	-	1	NA	NA	NA	-7	NM_174877	317755	Mm.11934	NM_174877	ENSMUSG00000063935	Zar1	-	zygote arrest 1	protein-coding	0.085000	0.656716	
mm_132065.1	chr16	30055532	30055732	+	1	NA	NA	NA	-9725	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hairy and enhancer of split 1 (Drosophila)	protein-coding	0.020000	0.497512	52(CTCTATAAAAAC,-,0.00)
mm_167232.1	chr8	13507355	13507555	+	1	NA	NA	NA	-12920	NM_019521	14456	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0.000000	0.442786	-66(GCCTTTATACCT,+,0.00)
mm_2288.1	chr1	91366357	91366557	+	1	NA	NA	NA	27	NM_173395	227358	Mm.389157	NM_173395	ENSMUSG00000047443	Erfe	4832406C22|Fam132b|myonectin	erythroferrone	protein-coding	0.165000	0.751244	-35(CGCGTTATAAGG,-,0.00)
mm_104916.1	chr11	99764055	99764255	-	1	NA	NA	NA	8758	NM_001126322	100040276	Mm.475095	NM_001126322	ENSMUSG00000078668	Gm11595	OTTMUSG00000002543	predicted gene 11595	protein-coding	0.010000	0.472637	-34(GGGTATAAAAGC,-,0.00)
mm_93023.1	chr10	87930612	87930812	-	1	NA	NA	NA	-35959	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.020000	0.432836	
mm_64929.1	chr7	16285367	16285567	-	1	NA	NA	NA	-808	NM_172297	243846	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0.020000	0.532338	
mm_79362.1	chr9	54467637	54467837	+	1	NA	NA	NA	33889	NM_172771	235380	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.000000	0.422886	75(CCCTTTTTAGGC,-,0.00),77(CTTTTTAGGCTC,+,0.00)
mm_105339.1	chr11	102994797	102994997	-	1	NA	NA	NA	5024	NR_105896	102466988		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.035000	0.597015	
mm_164522.1	chr17	3155708	3155908	+	1	NA	NA	NA	40836	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.030000	0.422886	
mm_166006.1	chr4	117134046	117134246	+	1	NA	NA	NA	-183	NM_001313916	12795	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo-like kinase 3	protein-coding	0.035000	0.577114	-25(CGTTCTTAAAGG,-,0.00),-24(GTTCTTAAAGGC,+,0.00),2(TGGCCTTAAAGG,-,0.00),3(GGCCTTAAAGGA,-,0.00),4(GCCTTAAAGGAG,+,0.00)
mm_154124.1	chr19	57230322	57230522	-	1	NA	NA	NA	-14390	NM_178688	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.010000	0.487562	
mm_69543.1	chr7	135695665	135695865	-	1	NA	NA	NA	20614	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.015000	0.447761	
mm_158474.1	chrX	141473756	141473956	-	1	NA	NA	NA	220	NM_053185	94216	Mm.155586	NM_053185	ENSMUSG00000031273	Col4a6	BB116301	collagen, type IV, alpha 6	protein-coding	0.035000	0.592040	
mm_61542.1	chr7	79299750	79299950	+	1	NA	NA	NA	26584	NM_018811	54608	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.025000	0.482587	
mm_17799.1	chr2	33260844	33261044	-	1	NA	NA	NA	44983	NM_011923	26360	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0.030000	0.562189	
mm_101940.1	chr11	50207522	50207722	-	1	NA	NA	NA	3198	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.035000	0.572139	
mm_161051.1	chr12	52795722	52795922	+	1	NA	NA	NA	96439	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.020000	0.427861	
mm_32946.1	chr4	119539622	119539822	+	1	NA	NA	NA	61	NM_172699	230700	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	0.160000	0.786070	
mm_156527.1	chrX	151046037	151046237	+	1	NA	NA	NA	-1033	NM_008001	14163	Mm.8142	NM_008001	ENSMUSG00000025265	Fgd1	ZFYVE3	FYVE, RhoGEF and PH domain containing 1	protein-coding	0.025000	0.442786	
mm_52454.1	chr6	113690633	113690833	+	1	NA	NA	NA	-6317	NM_001347356	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.035000	0.592040	
mm_160239.1	chr7	104068765	104068965	-	1	NA	NA	NA	164	NM_147121	259125	Mm.377862	NM_147121	ENSMUSG00000110012	Olfr644	MOR13-1	olfactory receptor 644	protein-coding	0.005000	0.492537	
mm_132671.1	chr16	42875793	42875993	+	1	NA	NA	NA	-131	NR_040522	75722	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	ENSMUSG00000075070|Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	0.085000	0.597015	
mm_148341.1	chr18	84589409	84589609	-	1	NA	NA	NA	-5	NM_001033341	240476	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.080000	0.621891	
mm_28101.1	chr3	86546549	86546749	-	1	NA	NA	NA	1634	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.030000	0.547264	
mm_137775.1	chr17	29491693	29491893	+	1	NA	NA	NA	748	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.070000	0.592040	
mm_123190.1	chr14	57916514	57916714	-	1	NA	NA	NA	-26352	NM_029492	75965	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|ENSMUSG00000055956|HK11	zinc finger, DHHC domain containing 20	protein-coding	0.000000	0.398010	
mm_10001.1	chr1	191519737	191519937	-	1	NA	NA	NA	55707	NM_001305233	76843	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	0.005000	0.492537	
mm_90120.1	chr10	117280551	117280751	+	1	NA	NA	NA	1621	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.010000	0.467662	
mm_101623.1	chr11	35915499	35915699	-	1	NA	NA	NA	64490	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.015000	0.547264	
mm_166080.1	chr4	137510882	137511082	+	1	NA	NA	NA	-27304	NR_105985	102465616		NR_105985	ENSMUSG00000099134	Mir7018	Gm27606|mmu-mir-7018	microRNA 7018	ncRNA	0.025000	0.611940	
mm_89141.1	chr10	85871305	85871505	+	1	NA	NA	NA	-426	NM_133993	103136	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	0.005000	0.492537	
mm_112797.1	chr13	20429004	20429204	+	1	NA	NA	NA	-43886	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.005000	0.378109	
mm_118864.1	chr14	25842505	25842705	+	1	NA	NA	NA	450	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.055000	0.592040	-29(GTTTATATAAGG,-,0.00)
mm_66539.1	chr7	45179453	45179653	-	1	NA	NA	NA	44	NM_001195255	100039953	Mm.300663	NM_001195255	ENSMUSG00000095276	Gfy	Gm2515|Gm581|Goofy	golgi-associated olfactory signaling regulator	protein-coding	0.030000	0.587065	
mm_125608.1	chr15	60823850	60824050	+	1	NA	NA	NA	985	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0.035000	0.512438	
mm_140745.1	chr17	15830740	15830940	-	1	NA	NA	NA	-4254	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.055000	0.696517	
mm_113986.1	chr13	52582650	52582850	+	1	NA	NA	NA	-687	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.030000	0.552239	
mm_146627.1	chr18	10181944	10182144	-	1	NA	NA	NA	-252	NM_009071	19877	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.105000	0.696517	
mm_60807.1	chr7	45639888	45640088	+	1	NA	NA	NA	11	NM_172418	74490	Mm.107442	NM_172418	ENSMUSG00000042918	Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding	0.030000	0.557214	-79(CCCTAGAAAGGG,-,0.00)
mm_8774.1	chr1	161070544	161070744	-	1	NA	NA	NA	16	NM_172644	226539	Mm.28125	NM_172644	ENSMUSG00000026709	Dars2	5830468K18Rik|aspRS	aspartyl-tRNA synthetase 2 (mitochondrial)	protein-coding	0.065000	0.557214	
mm_106989.1	chr12	10390961	10391161	+	1	NA	NA	NA	281	NM_023697	105014	Mm.119343	NM_023697	ENSMUSG00000020621	Rdh14	3110030G19Rik|AW215439|PAN2	retinol dehydrogenase 14 (all-trans and 9-cis)	protein-coding	0.105000	0.721393	
mm_83694.1	chr9	50603708	50603908	-	1	NA	NA	NA	41	NM_025848	66925	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0.065000	0.557214	26(TTCTCTTAAAGC,-,0.00)
mm_79163.1	chr9	47818636	47818836	+	1	NA	NA	NA	-528	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.000000	0.452736	
mm_37888.1	chr4	132530630	132530830	-	1	NA	NA	NA	4684	NM_007512	11983	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0.040000	0.467662	
mm_62312.1	chr7	100227686	100227886	+	1	NA	NA	NA	179	NM_027629	70974	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0.070000	0.641791	
mm_79349.1	chr9	53771223	53771423	+	1	NA	NA	NA	-212	NM_028060	72022	Mm.26159	NM_028060	ENSMUSG00000042195	Slc35f2	1500009K05Rik|AU019213	solute carrier family 35, member F2	protein-coding	0.020000	0.462687	
mm_37978.1	chr4	133601730	133601930	-	1	NA	NA	NA	338	NM_018754	55948	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	0.040000	0.621891	
mm_38746.1	chr4	145270156	145270356	-	1	NA	NA	NA	-23386	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.005000	0.557214	
mm_145912.1	chr18	66470745	66470945	+	1	NA	NA	NA	12241	NM_021451	58801	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.045000	0.542289	
mm_49283.1	chr6	17641506	17641706	+	1	NA	NA	NA	4508	NM_007604	12343	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.000000	0.263682	
mm_63929.1	chr7	139410197	139410397	+	1	NA	NA	NA	21188	NM_001127363	212111	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.005000	0.497512	
mm_5401.1	chr1	33720164	33720364	-	1	NA	NA	NA	-155	NM_001159729	19335	Mm.86744	NM_008999	ENSMUSG00000004768	Rab23	AW545388|opb|opb2	RAB23, member RAS oncogene family	protein-coding	0.165000	0.781095	
mm_118707.1	chr14	22164887	22165087	+	1	NA	NA	NA	145275	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.000000	0.398010	
mm_84832.1	chr9	78342491	78342691	-	1	NA	NA	NA	4554	NM_008182	14858	Mm.422778	NM_008182	ENSMUSG00000057933	Gsta2	Gst2-2|Gstc-2|Gstc2	glutathione S-transferase, alpha 2 (Yc2)	protein-coding	0.015000	0.447761	
mm_91996.1	chr10	62143821	62144021	-	1	NA	NA	NA	10831	NM_009719	11925	Mm.57236	NM_009719	ENSMUSG00000044312	Neurog3	Atoh5|Math4B|bHLHa7|ngn3	neurogenin 3	protein-coding	0.010000	0.502488	
mm_21176.1	chr2	154871972	154872172	-	1	NA	NA	NA	20834	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.005000	0.437811	
mm_39342.1	chr5	8893611	8893811	+	1	NA	NA	NA	-10	NM_008830	18670	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.135000	0.786070	
mm_23355.1	chr3	55112291	55112491	+	1	NA	NA	NA	225	NM_001144987	229285	Mm.235523	NM_144895	ENSMUSG00000036580	Spg20	AI840044|C79168|SPARTIN|TAHCCP1|mKIAA0610	spastic paraplegia 20, spartin (Troyer syndrome) homolog (human)	protein-coding	0.070000	0.666667	
mm_130256.1	chr15	96642196	96642396	-	1	NA	NA	NA	47	NM_001166456	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.045000	0.606965	
mm_134418.1	chr16	17838038	17838238	-	1	NA	NA	NA	48	NM_030558	80733	Mm.390864	NM_030558	ENSMUSG00000090236	Car15	AI315043|Ca15|Cals2	carbonic anhydrase 15	protein-coding	0.010000	0.537313	
mm_132676.1	chr16	42921693	42921893	+	1	NA	NA	NA	-9723	NR_040402	100503040	Mm.490721	NR_040402		Gm19522	-	predicted gene, 19522	ncRNA	0.015000	0.402985	
mm_83769.1	chr9	52048654	52048854	-	1	NA	NA	NA	-49	NR_023357	629557	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.145000	0.736318	
mm_39881.1	chr5	31077504	31077704	+	1	NA	NA	NA	15923	NM_011773	22784	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.050000	0.577114	
mm_117018.1	chr13	58127522	58127722	-	1	NA	NA	NA	934	NM_029872	77134	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	0.175000	0.781095	
mm_5661.1	chr1	42681334	42681534	-	1	NA	NA	NA	13391	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.005000	0.278607	
mm_161303.1	chr14	32201783	32201983	-	1	NA	NA	NA	8	NM_016897	53600	Mm.303703	NM_016897	ENSMUSG00000013701	Timm23	Tim23	translocase of inner mitochondrial membrane 23	protein-coding	0.115000	0.671642	
mm_17089.1	chr2	23021528	23021728	-	1	NA	NA	NA	18613	NM_001077192	11308	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.010000	0.417910	
mm_165627.1	chr3	65515400	65515600	+	1	NA	NA	NA	-12947	NM_178892	99929	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	0.000000	0.517413	
mm_7768.1	chr1	131200017	131200217	-	1	NA	NA	NA	68	NM_001311094	54354	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.030000	0.611940	
mm_91263.1	chr10	23350720	23350920	-	1	NA	NA	NA	-877	NM_010167	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.035000	0.592040	
mm_135322.1	chr16	38783628	38783828	-	1	NA	NA	NA	16475	NM_178924	22268	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0.015000	0.432836	44(CCTTTTATGCCT,+,0.00)
mm_7329.1	chr1	105157757	105157957	-	1	NA	NA	NA	198853	NM_178779	320311	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	0.000000	0.457711	
mm_7187.1	chr1	92880125	92880325	-	1	NA	NA	NA	22681	NM_172850	241158	Mm.108280	NM_172850	ENSMUSG00000034212	Ankmy1	4930483I10Rik|ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding	0.015000	0.567164	
mm_121.1	chr1	9799096	9799296	+	1	NA	NA	NA	1066	NM_177547	170755	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.010000	0.482587	
mm_95211.1	chr11	43632712	43632912	+	1	NA	NA	NA	-31250	NM_008375	16204	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0.010000	0.472637	
mm_21285.1	chr2	156970312	156970512	-	1	NA	NA	NA	21699	NM_013865	29812	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0.010000	0.477612	
mm_119444.1	chr14	46832059	46832259	+	1	NA	NA	NA	-85	NM_026832	68755	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	0.075000	0.656716	
mm_4378.1	chr1	172148001	172148201	+	1	NA	NA	NA	86	NM_153555	98193	Mm.159915	NM_153555	ENSMUSG00000026554	Dcaf8	AA408877|AA433120|AA792214|AU018973|C76055|D1Dau35e|D1Ucla4|H326|Wdr42a	DDB1 and CUL4 associated factor 8	protein-coding	0.120000	0.721393	
mm_91665.1	chr10	43002603	43002803	-	1	NA	NA	NA	142191	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.030000	0.467662	-61(CGCTTTTTAAAC,-,0.00),-59(CTTTTTAAACAT,+,0.00),15(ATTTATAAAAGG,-,0.00)
mm_63371.1	chr7	127092364	127092564	+	1	NA	NA	NA	1028	NM_178901	101602	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	0.060000	0.646766	
mm_113332.1	chr13	31558224	31558424	+	1	NA	NA	NA	154	NM_008239	15220	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	0.115000	0.736318	
mm_132625.1	chr16	38902175	38902375	+	1	NA	NA	NA	-70	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.105000	0.746269	
mm_109134.1	chr12	106010115	106010315	+	1	NA	NA	NA	-48	NM_011705	22367	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0.090000	0.626866	
mm_155866.1	chrX	101383692	101383892	+	1	NA	NA	NA	60	NM_001302497	14618	Mm.21198	NM_008124	ENSMUSG00000047797	Gjb1	Cnx32|Cx32|connexin-32	gap junction protein, beta 1	protein-coding	0.040000	0.582090	
mm_20573.1	chr2	131085559	131085759	-	1	NA	NA	NA	1106	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.025000	0.562189	
mm_42666.1	chr5	119670987	119671187	+	1	NA	NA	NA	-146	NM_011535	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.070000	0.572139	
mm_137957.1	chr17	32993074	32993274	+	1	NA	NA	NA	35	NM_001045559	240067	Mm.246667	NM_199020	ENSMUSG00000053390	Zfp952	BC057593|C920016K16Rik	zinc finger protein 952	protein-coding	0.045000	0.497512	
mm_146571.1	chr18	6515998	6516198	-	1	NA	NA	NA	10	NM_007935	13831	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1 (Drosophila)	protein-coding	0.125000	0.731343	
mm_45469.1	chr5	69341478	69341678	-	1	NA	NA	NA	131	NM_175519	243043	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	0.095000	0.676617	
mm_152289.1	chr19	8999614	8999814	-	1	NA	NA	NA	10430	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.025000	0.487562	
mm_93550.1	chr10	116113855	116114055	-	1	NA	NA	NA	-38	NM_001161855	619332	Mm.391427	NM_001033821	ENSMUSG00000074734	4933416C03Rik	-	RIKEN cDNA 4933416C03 gene	protein-coding	0.075000	0.686567	
mm_50249.1	chr6	42358212	42358412	+	1	NA	NA	NA	8484	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.005000	0.527363	
mm_20157.1	chr2	122118281	122118481	-	1	NA	NA	NA	5	NM_145531	214585	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	spastic paraplegia 11	protein-coding	0.085000	0.691542	
mm_125895.1	chr15	75890565	75890765	+	1	NA	NA	NA	-1942	NM_001282443	223645		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0.010000	0.592040	-28(CCCTATATACTC,+,0.00)
mm_131524.1	chr16	17619409	17619609	+	1	NA	NA	NA	155	NM_001164609	77626	Mm.34659	NM_029945	ENSMUSG00000005899	Smpd4	4122402O22Rik|mKIAA1418	sphingomyelin phosphodiesterase 4	protein-coding	0.110000	0.721393	
mm_49385.1	chr6	24791091	24791291	+	1	NA	NA	NA	3	NM_001079875	20690	Mm.4688	NM_009241	ENSMUSG00000029682	Spam1	AV039194|Ph-20	sperm adhesion molecule 1	protein-coding	0.000000	0.432836	
mm_42717.1	chr5	120511092	120511292	+	1	NA	NA	NA	0	NM_001177595	170756	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.085000	0.686567	-99(GAGCCTTAAAGG,-,0.00),-98(AGCCTTAAAGGG,-,0.00),-97(GCCTTAAAGGGC,+,0.00),-96(CCTTAAAGGGCG,+,0.00)
mm_168222.1	chr10	78465270	78465470	-	1	NA	NA	NA	-422	NM_172134	216134	Mm.206159	NM_172134	ENSMUSG00000032788	Pdxk	2310036D04Rik|AA119688|C77999	pyridoxal (pyridoxine, vitamin B6) kinase	protein-coding	0.020000	0.537313	
mm_76869.1	chr8	105525264	105525464	-	1	NA	NA	NA	6618	NM_008289	15484	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	0.035000	0.592040	
mm_29738.1	chr3	126922736	126922936	-	1	NA	NA	NA	20550	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.005000	0.368159	
mm_33704.1	chr4	133632251	133632451	+	1	NA	NA	NA	1078	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.015000	0.532338	
mm_53401.1	chr6	131365208	131365408	+	1	NA	NA	NA	23142	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.020000	0.398010	
mm_164917.1	chr18	75767065	75767265	+	1	NA	NA	NA	-53013	NM_145356	207259	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0.045000	0.517413	
mm_68865.1	chr7	126414811	126415011	-	1	NA	NA	NA	-41	NM_009844	12478	Mm.4360	NM_009844	ENSMUSG00000030724	Cd19	AW495831	CD19 antigen	protein-coding	0.025000	0.611940	
mm_113711.1	chr13	43508404	43508604	+	1	NA	NA	NA	-27531	NM_019930	56705	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.015000	0.422886	-32(TTTTATAAAAGG,-,0.00)
mm_73451.1	chr8	106329144	106329344	+	1	NA	NA	NA	8744	NM_021491	58994	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0.005000	0.442786	
mm_123253.1	chr14	61046136	61046336	-	1	NA	NA	NA	619	NM_013869	29820	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.060000	0.527363	
mm_26236.1	chr3	141449097	141449297	+	1	NA	NA	NA	-16367	NM_009472	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.015000	0.363184	
mm_25753.1	chr3	123293682	123293882	+	1	NA	NA	NA	26286	NM_027135	69608	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	0.025000	0.651741	
mm_148552.1	chr19	4711902	4712102	+	1	NA	NA	NA	779	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	0.140000	0.766169	
mm_36046.1	chr4	57289965	57290165	-	1	NA	NA	NA	11772	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.010000	0.487562	-94(CCTTTTCTAACC,+,0.00)
mm_5472.1	chr1	36558258	36558458	-	1	NA	NA	NA	23	NM_001126047	20353	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.090000	0.721393	
mm_77879.1	chr9	7272429	7272629	+	1	NA	NA	NA	15	NM_008607	17386	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0.005000	0.512438	
mm_97315.1	chr11	76891042	76891242	+	1	NA	NA	NA	-13403	NM_025655	66601	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.020000	0.437811	
mm_149372.1	chr19	11372604	11372804	+	1	NA	NA	NA	-2784	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.000000	0.402985	
mm_113803.1	chr13	46501772	46501972	+	1	NA	NA	NA	-31	NM_026056	67252	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding	0.045000	0.592040	
mm_122733.1	chr14	52369608	52369808	-	1	NA	NA	NA	3343	NM_146432	258424	Mm.377493	NM_146432	ENSMUSG00000094140	Olfr1512	MOR223-5	olfactory receptor 1512	protein-coding	0.030000	0.507463	
mm_116711.1	chr13	51567708	51567908	-	1	NA	NA	NA	-724	NM_009167	20418	Mm.131870	NM_009167	ENSMUSG00000021448	Shc3	N-Shc|Rai|ShcC	src homology 2 domain-containing transforming protein C3	protein-coding	0.045000	0.527363	
mm_22418.1	chr2	181578826	181579026	-	1	NA	NA	NA	446	NR_027289	100271841	Mm.438007	NR_027289	ENSMUSG00000010492	Uckl1os	Gm16119|OTTMUSG00000030649	uridine-cytidine kinase 1-like 1, opposite strand	ncRNA	0.000000	0.527363	
mm_43002.1	chr5	123445705	123445905	+	1	NA	NA	NA	36296	NM_029594	76399	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.005000	0.542289	
mm_67300.1	chr7	79300820	79301020	-	1	NA	NA	NA	27654	NM_018811	54608	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.020000	0.517413	
mm_85652.1	chr9	107658577	107658777	-	1	NA	NA	NA	8722	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.030000	0.537313	61(CCCTAAATAGCC,+,0.00)
mm_77868.1	chr9	5345325	5345525	+	1	NA	NA	NA	-51	NM_009808	12364	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0.015000	0.462687	65(CTTTTTATGTCC,+,0.00)
mm_30782.1	chr4	19491853	19492053	+	1	NA	NA	NA	78151	NM_027769	70568	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	0.000000	0.447761	
mm_22854.1	chr3	28263335	28263535	+	1	NA	NA	NA	221	NM_001163009	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.115000	0.706468	-90(CCATTTAAATAC,+,0.00)
mm_131925.1	chr16	23375139	23375339	+	1	NA	NA	NA	-53894	NM_001004151	239766	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0.020000	0.452736	
mm_9217.1	chr1	171231840	171232040	-	1	NA	NA	NA	2409	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.005000	0.452736	
mm_26818.1	chr3	10331185	10331385	-	1	NA	NA	NA	154	NM_018864	55980	Mm.183042	NM_018864	ENSMUSG00000027531	Impa1	2610002K09Rik|2900059K10Rik|AI325909	inositol (myo)-1(or 4)-monophosphatase 1	protein-coding	0.130000	0.711443	
mm_105288.1	chr11	102447527	102447727	-	1	NA	NA	NA	36	NM_199200	217219	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0.140000	0.781095	
mm_8353.1	chr1	150362104	150362304	-	1	NA	NA	NA	-15433	NR_040603	75584	Mm.47709	NR_040603	ENSMUSG00000099447	2310030A07Rik	-	RIKEN cDNA 2310030A07 gene	ncRNA	0.000000	0.417910	
mm_132476.1	chr16	36711940	36712140	+	1	NA	NA	NA	18062	NM_001285791	106347	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.020000	0.457711	
mm_11983.1	chr2	55435695	55435895	+	1	NA	NA	NA	-175	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.025000	0.577114	
mm_129115.1	chr15	76080808	76081008	-	1	NA	NA	NA	-38	NM_001164600	67959	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	0.170000	0.676617	
mm_29504.1	chr3	116129357	116129557	-	1	NA	NA	NA	231	NM_011693	22329	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0.015000	0.487562	-33(CCCTTTATAAAG,+,0.00),-33(CCCTTTATAAAG,-,0.00),-31(CTTTATAAAGAG,+,0.00)
mm_156724.1	chrX	159840459	159840659	+	1	NA	NA	NA	91	NM_001135728	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.015000	0.447761	
mm_130734.1	chr15	101250171	101250371	-	1	NA	NA	NA	-16575	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.020000	0.507463	
mm_160343.1	chr8	19293470	19293670	+	1	NA	NA	NA	209	NM_013756	27358	Mm.103651	NM_013756	ENSMUSG00000039775	Defb3	BD-3	defensin beta 3	protein-coding	0.005000	0.437811	
mm_70532.1	chr8	13037246	13037446	+	1	NA	NA	NA	38	NM_001242368	14058	Mm.262589	NM_007972	ENSMUSG00000031444	F10	Cf10|fX	coagulation factor X	protein-coding	0.020000	0.517413	
mm_90031.1	chr10	115430814	115431014	+	1	NA	NA	NA	45955	NM_001033261	216345	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0.000000	0.343284	
mm_67570.1	chr7	81934290	81934490	-	1	NA	NA	NA	69	NM_013886	29877	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfrp3	2700022B06Rik|HRP-3	hepatoma-derived growth factor, related protein 3	protein-coding	0.130000	0.701493	
mm_20930.1	chr2	150855915	150856115	-	1	NA	NA	NA	48716	NM_024465	76192	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.000000	0.412935	
mm_167154.1	chr7	131322341	131322541	-	1	NA	NA	NA	-149	NM_008411	16433	Mm.142717	NM_008411	ENSMUSG00000040205	Cuzd1	Erg-1|Itmap1|Uo-44|Usg|Utczp	CUB and zona pellucida-like domains 1	protein-coding	0.000000	0.542289	
mm_13722.1	chr2	117342293	117342493	+	1	NA	NA	NA	484	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.035000	0.616915	
mm_142072.1	chr17	35697919	35698119	-	1	NA	NA	NA	2571	NM_001198833	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.040000	0.611940	
mm_105619.1	chr11	106788823	106789023	-	1	NA	NA	NA	-329	NM_177088	320162	Mm.30524	NM_177088	ENSMUSG00000018372	Cep95	4732496G21Rik|AI118346|AI448335|Ccdc45|D330027A14Rik|F630025I20Rik	centrosomal protein 95	protein-coding	0.075000	0.606965	
mm_99404.1	chr11	102245296	102245496	+	1	NA	NA	NA	-3486	NM_153544	217216	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	0.065000	0.562189	
mm_114745.1	chr13	84063010	84063210	+	1	NA	NA	NA	1664	NR_131220	553095	Mm.39702	NR_131220	ENSMUSG00000098087	Gm17750	-	predicted gene, 17750	ncRNA	0.005000	0.343284	
mm_122489.1	chr14	46390491	46390691	-	1	NA	NA	NA	78	NM_001316360	12159	Mm.6813	NM_007554	ENSMUSG00000021835	Bmp4	Bmp-4|Bmp2b|Bmp2b-1|Bmp2b1	bone morphogenetic protein 4	protein-coding	0.035000	0.616915	
mm_125706.1	chr15	68258498	68258698	+	1	NA	NA	NA	258	NM_001145888	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.160000	0.776119	
mm_132327.1	chr16	33798878	33799078	+	1	NA	NA	NA	4941	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.035000	0.542289	
mm_78821.1	chr9	44089015	44089215	+	1	NA	NA	NA	4195	NM_198091	53376	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.030000	0.542289	
mm_92768.1	chr10	81134298	81134498	-	1	NA	NA	NA	-1873	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.065000	0.681592	
mm_160129.1	chr7	29168343	29168543	-	1	NA	NA	NA	204	NM_182927	101809	Mm.377262	NM_182927	ENSMUSG00000037239	Spred3	AW047143|D130060H24Rik|Spred-3	sprouty-related, EVH1 domain containing 3	protein-coding	0.020000	0.547264	
mm_59317.1	chr7	25291102	25291302	+	1	NA	NA	NA	6753	NM_008776	18476	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	0.005000	0.611940	
mm_65817.1	chr7	29155527	29155727	-	1	NA	NA	NA	583	NM_001146023	73833	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	0.090000	0.676617	
mm_149444.1	chr19	11484073	11484273	+	1	NA	NA	NA	-7865	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.005000	0.343284	
mm_78312.1	chr9	23223455	23223655	+	1	NA	NA	NA	479	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.110000	0.746269	
mm_1966.1	chr1	86488952	86489152	+	1	NA	NA	NA	-37684	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.015000	0.477612	
mm_117659.1	chr13	93192300	93192500	-	1	NA	NA	NA	-117	NM_133905	100715	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0.080000	0.562189	
mm_153377.1	chr19	40365078	40365278	-	1	NA	NA	NA	37132	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.020000	0.532338	
mm_159025.1	chr1	173344257	173344457	-	1	NA	NA	NA	-10854	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	0.025000	0.507463	
mm_115215.1	chr13	109478730	109478930	+	1	NA	NA	NA	154086	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.005000	0.422886	
mm_128999.1	chr15	74842486	74842686	-	1	NA	NA	NA	-943	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.005000	0.462687	
mm_3987.1	chr1	164307610	164307810	+	1	NA	NA	NA	38	NM_178071	171567	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	0.050000	0.532338	
mm_136812.1	chr17	12391724	12391924	+	1	NA	NA	NA	13215	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.000000	0.512438	
mm_142025.1	chr17	35205397	35205597	-	1	NA	NA	NA	-146	NM_010735	16992	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0.020000	0.567164	
mm_10375.1	chr2	11725022	11725222	+	1	NA	NA	NA	19410	NM_001271500	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.000000	0.487562	
mm_2624.1	chr1	120621519	120621719	+	1	NA	NA	NA	19132	NM_010133	13798	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1|engrailed-1	engrailed 1	protein-coding	0.005000	0.477612	
mm_44437.1	chr5	21330597	21330797	-	1	NA	NA	NA	-41976	NM_008013	14190	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.040000	0.557214	
mm_80778.1	chr9	95637318	95637518	+	1	NA	NA	NA	-210	NM_029620	76477	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.025000	0.507463	-35(GTGTATTTAAAG,-,0.00),-33(GTATTTAAAGCG,+,0.00)
mm_74471.1	chr8	4258205	4258405	-	1	NA	NA	NA	969	NM_183315	330695	Mm.34210	NM_183315	ENSMUSG00000048644	Ctxn1	BC028881|Ctxn	cortexin 1	protein-coding	0.035000	0.592040	
mm_149073.1	chr19	8871561	8871761	+	1	NA	NA	NA	102	NM_146093	225896	Mm.27839	NM_146093	ENSMUSG00000071655	Ubxn1	2B28|4930455J02Rik|D19Ertd721e|T25529	UBX domain protein 1	protein-coding	0.130000	0.736318	
mm_7386.1	chr1	110977228	110977428	-	1	NA	NA	NA	44	NM_001081386	227485	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding	0.010000	0.427861	
mm_99999.1	chr11	114851050	114851250	+	1	NA	NA	NA	-382	NM_001110337	70355	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.035000	0.557214	
mm_24149.1	chr3	88337748	88337948	+	1	NA	NA	NA	1588	NM_178246	229512	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.020000	0.527363	
mm_62163.1	chr7	97210226	97210426	+	1	NA	NA	NA	115638	NM_001177412	244144	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.000000	0.358209	
mm_60419.1	chr7	44476237	44476437	+	1	NA	NA	NA	5990	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.467662	
mm_28160.1	chr3	87768964	87769164	-	1	NA	NA	NA	-111	NM_001032414	73182	Mm.158962	NM_028460	ENSMUSG00000028073	Pear1	3110045G13Rik|Jedi-1|Megf12	platelet endothelial aggregation receptor 1	protein-coding	0.120000	0.776119	
mm_121772.1	chr14	19875205	19875405	-	1	NA	NA	NA	36380	NR_105025	52512	Mm.483998	NR_105025		D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.005000	0.398010	-29(CTCTTTTAGAGG,-,0.00),-28(TCTTTTAGAGGG,+,0.00)
mm_96156.1	chr11	61485662	61485862	+	1	NA	NA	NA	318	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.025000	0.651741	
mm_101057.1	chr11	9011038	9011238	-	1	NA	NA	NA	53	NM_001303610	15574	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	0.100000	0.661692	
mm_117566.1	chr13	85285668	85285868	-	1	NA	NA	NA	3718	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.000000	0.437811	
mm_61127.1	chr7	55842243	55842443	+	1	NA	NA	NA	272	NM_001164661	20430	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.095000	0.711443	
mm_150657.1	chr19	41981137	41981337	+	1	NA	NA	NA	-101	NM_028152	72199	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	0.075000	0.711443	
mm_122946.1	chr14	54965760	54965960	-	1	NA	NA	NA	747	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.015000	0.557214	
mm_165509.1	chr2	172100444	172100644	+	1	NA	NA	NA	-57078	NM_175631	228942	Mm.40555	NM_175631	ENSMUSG00000067578	Cbln4	AI848962	cerebellin 4 precursor protein	protein-coding	0.045000	0.507463	
mm_138224.1	chr17	34341856	34342056	+	1	NA	NA	NA	2689	NM_010381	100504404	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	0.010000	0.422886	
mm_43069.1	chr5	124445397	124445597	+	1	NA	NA	NA	-2	NM_001310723	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.205000	0.870647	
mm_6788.1	chr1	84140447	84140647	-	1	NA	NA	NA	78414	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.343284	
mm_162176.1	chrX	102157111	102157311	-	1	NA	NA	NA	-120	NM_146235	236930	Mm.31911	NM_146235	ENSMUSG00000051220	Ercc6l	BC004701|D330021P09Rik	excision repair cross-complementing rodent repair deficiency complementation group 6 like	protein-coding	0.080000	0.577114	
mm_100760.1	chr11	4497452	4497652	-	1	NA	NA	NA	-56470	NM_029458	75828	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0.020000	0.452736	
mm_22578.1	chr3	10366877	10367077	+	1	NA	NA	NA	4	NM_025519	66371	Mm.366147	NM_025519	ENSMUSG00000027536	Chmp4c	2010012P02Rik|2210015K02Rik|2310010I16Rik|Shax3|Snf7-3	charged multivesicular body protein 4C	protein-coding	0.060000	0.606965	72(GTTCTTTAAAGG,-,0.00),73(TTCTTTAAAGGG,-,0.00),74(TCTTTAAAGGGA,+,0.00)
mm_145004.1	chr18	38418866	38419066	+	1	NA	NA	NA	-9	NM_022996	65113	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.180000	0.781095	
mm_91748.1	chr10	49722958	49723158	-	1	NA	NA	NA	65696	NM_010349	14806	Mm.332838	NM_010349	ENSMUSG00000056073	Grik2	AW124492|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.000000	0.328358	
mm_168067.1	chr10	104545759	104545959	-	1	NA	NA	NA	258590	NR_105838	102465222		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA	0.060000	0.636816	
mm_15192.1	chr2	154204625	154204825	+	1	NA	NA	NA	4345	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.020000	0.567164	
mm_25994.1	chr3	134236438	134236638	+	1	NA	NA	NA	43	NM_001004367	319478	Mm.224814	NM_001004367	ENSMUSG00000044365	Cxxc4	9330210J02Rik|C030003J12Rik|Idax	CXXC finger 4	protein-coding	0.080000	0.666667	
mm_70882.1	chr8	25274380	25274580	+	1	NA	NA	NA	31790	NR_040352	74489	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0.035000	0.557214	
mm_108280.1	chr12	79029107	79029307	+	1	NA	NA	NA	44	NM_181073	211945	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	0.145000	0.786070	
mm_152607.1	chr19	11868833	11869033	-	1	NA	NA	NA	2281	NM_001011775	257938	Mm.377309	NM_001011775	ENSMUSG00000067545	Olfr1419	MOR266-10	olfactory receptor 1419	protein-coding	0.105000	0.701493	
mm_47483.1	chr5	123865368	123865568	-	1	NA	NA	NA	48	NM_030701	80885	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0.035000	0.507463	
mm_84001.1	chr9	57552640	57552840	-	1	NA	NA	NA	12	NM_025837	110119	Mm.247218	NM_025837	ENSMUSG00000032306	Mpi	1110002E17Rik|AI315153|Mpi-1|Mpi1	mannose phosphate isomerase	protein-coding	0.070000	0.577114	
mm_37046.1	chr4	115939826	115940026	-	1	NA	NA	NA	0	NM_001025567	140477	Mm.213206	NM_130865	ENSMUSG00000028707	Dmbx1	Atx|Cdmx|Mbx|Otx3	diencephalon/mesencephalon homeobox 1	protein-coding	0.130000	0.746269	
mm_155510.1	chrX	74027240	74027440	+	1	NA	NA	NA	-3404	NR_030758	751533		NR_030758	ENSMUSG00000076127	Mir718	Mirn718|mir-718|mmu-mir-718	microRNA 718	ncRNA	0.000000	0.507463	
mm_126420.1	chr15	80320181	80320381	+	1	NA	NA	NA	33043	NM_001044308	239556	Mm.291058	NM_001044308	ENSMUSG00000022416	Cacna1i	Ca(V)3.3	calcium channel, voltage-dependent, alpha 1I subunit	protein-coding	0.030000	0.606965	
mm_138494.1	chr17	35200435	35200635	+	1	NA	NA	NA	1472	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.025000	0.597015	
mm_76342.1	chr8	84722810	84723010	-	1	NA	NA	NA	21453	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.010000	0.601990	
mm_158675.1	chrX	158043133	158043333	-	1	NA	NA	NA	-36	NM_177751	245684	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding	0.140000	0.731343	
mm_96837.1	chr11	70018298	70018498	+	1	NA	NA	NA	-207	NM_001109752	13385	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs, large homolog 4 (Drosophila)	protein-coding	0.035000	0.621891	
mm_31782.1	chr4	63560628	63560828	+	1	NA	NA	NA	368	NM_144905	230279	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.015000	0.532338	44(CTTTTTATAGGG,+,0.00)
mm_164704.1	chr17	51766511	51766711	-	1	NA	NA	NA	45443	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.020000	0.338308	
mm_122408.1	chr14	41008183	41008383	-	1	NA	NA	NA	-17	NM_001316740	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.005000	0.572139	
mm_83290.1	chr9	43116573	43116773	-	1	NA	NA	NA	-103	NM_001034863	235300	Mm.261326	NM_001034863	ENSMUSG00000048503	Tmem136	AA396355|Gm184	transmembrane protein 136	protein-coding	0.030000	0.552239	
mm_150018.1	chr19	29370142	29370342	+	1	NA	NA	NA	2804	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.035000	0.582090	
mm_167861.1	chrX	19148942	19149142	-	1	NA	NA	NA	-2071	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.020000	0.437811	
mm_49841.1	chr6	38345952	38346152	+	1	NA	NA	NA	8551	NM_028864	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.025000	0.512438	18(GGGTAGAAAAGC,-,0.00)
mm_140551.1	chr17	7169723	7169923	-	1	NA	NA	NA	-292	NM_011299	20112	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.065000	0.636816	
mm_73891.1	chr8	119418855	119419055	+	1	NA	NA	NA	-18207	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.010000	0.626866	
mm_77564.1	chr8	123428007	123428207	-	1	NA	NA	NA	-14849	NM_001253784	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.040000	0.611940	
mm_33272.1	chr4	128221018	128221218	+	1	NA	NA	NA	39777	NM_027036	69317	Mm.331893	NM_027036	ENSMUSG00000048686	Hmgb4	1700001F22Rik|AI326135	high-mobility group box 4	protein-coding	0.005000	0.492537	
mm_103930.1	chr11	83648322	83648522	-	1	NA	NA	NA	956	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.025000	0.502488	
mm_24165.1	chr3	88537234	88537434	+	1	NA	NA	NA	-952	NR_035434	100316808		NR_035434	ENSMUSG00000084728	Mir1905	Mirn1905|mmu-mir-1905	microRNA 1905	ncRNA	0.010000	0.502488	
mm_140955.1	chr17	24614405	24614605	-	1	NA	NA	NA	18122	NM_011647	22084	Mm.30435	NM_011647	ENSMUSG00000002496	Tsc2	Nafld|Tcs2	tuberous sclerosis 2	protein-coding	0.020000	0.592040	
mm_94194.1	chr10	130280158	130280358	-	1	NA	NA	NA	-4	NM_007501	11923	Mm.10695	NM_007501	ENSMUSG00000048015	Neurod4	AI846749|ATH-3|Atoh3|MATH-3|Math3|bHLHa4	neurogenic differentiation 4	protein-coding	0.030000	0.577114	
mm_89413.1	chr10	90829686	90829886	+	1	NA	NA	NA	-57	NM_001347053	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.155000	0.766169	
mm_712.1	chr1	42259707	42259907	+	1	NA	NA	NA	435018	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.005000	0.477612	
mm_70825.1	chr8	23139939	23140139	+	1	NA	NA	NA	1009	NM_001310437	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.025000	0.582090	
mm_78145.1	chr9	21002668	21002868	+	1	NA	NA	NA	31	NM_023167	66163	Mm.427576	NM_023167	ENSMUSG00000003299	Mrpl4	1110017G11Rik	mitochondrial ribosomal protein L4	protein-coding	0.085000	0.621891	
mm_65780.1	chr7	28766881	28767081	-	1	NA	NA	NA	229	NM_001122766	64383	Mm.272443	NM_022432	ENSMUSG00000015149	Sirt2	5730427M03Rik|SIR2L2|Sir2l	sirtuin 2	protein-coding	0.055000	0.621891	
mm_90101.1	chr10	116966191	116966391	+	1	NA	NA	NA	17	NR_027846	103175	Mm.27138	NR_027846	ENSMUSG00000031294	D630029K05Rik	AI314111|AI875589	RIKEN cDNA D630029K05 gene	ncRNA	0.020000	0.552239	
mm_95574.1	chr11	52403361	52403561	+	1	NA	NA	NA	7033	NM_153117	213673	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.015000	0.492537	
mm_172236.1	chr6	68243044	68243244	+	1	NA	NA	NA	-677445	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.030000	0.422886	
mm_111595.1	chr12	101976126	101976326	-	1	NA	NA	NA	252	NM_016856	51786	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.095000	0.656716	
mm_146909.1	chr18	31317044	31317244	-	1	NA	NA	NA	-16	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding	0.020000	0.497512	
mm_22207.1	chr2	173659572	173659772	-	1	NA	NA	NA	-133	NR_027957	100043911	Mm.260590	NM_001033179	ENSMUSG00000055897	Ppp4r1l-ps	1700007P14Rik|5830403E09Rik|C030010B13Rik|Ppp4r1l	protein phosphatase 4, regulatory subunit 1-like, pseudogene	pseudo	0.080000	0.686567	
mm_38132.1	chr4	134703515	134703715	-	1	NA	NA	NA	675	NM_207237	230815	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.115000	0.756219	
mm_127021.1	chr15	96286662	96286862	+	1	NA	NA	NA	-760	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.120000	0.686567	
mm_40850.1	chr5	73480928	73481128	+	1	NA	NA	NA	-27	NM_001190734	100737	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.040000	0.542289	
mm_92521.1	chr10	78591811	78592011	-	1	NA	NA	NA	53	NM_027875	71709	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	0.110000	0.716418	
mm_87891.1	chr10	61845659	61845859	+	1	NA	NA	NA	-61895	NM_207000	404634	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	0.010000	0.552239	
mm_46370.1	chr5	103647375	103647575	-	1	NA	NA	NA	8249	NM_028824	74218	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.010000	0.507463	-89(CCTCTTAGAGGT,+,0.00)
mm_155874.1	chrX	101447797	101447997	+	1	NA	NA	NA	-1212	NM_013712	26549	Mm.46232	NM_013712	ENSMUSG00000031312	Itgb1bp2	Chordc3	integrin beta 1 binding protein 2	protein-coding	0.000000	0.472637	
mm_23231.1	chr3	50436595	50436795	+	1	NA	NA	NA	6918	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.417910	
mm_76015.1	chr8	73305631	73305831	-	1	NA	NA	NA	47809	NM_001317391	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.015000	0.417910	
mm_8564.1	chr1	155417167	155417367	-	1	NA	NA	NA	177	NM_011273	19775	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.110000	0.686567	
mm_63830.1	chr7	135172660	135172860	+	1	NA	NA	NA	23242	NR_046050	74314	Mm.415339	NR_046050	ENSMUSG00000100717	1700120G07Rik	-	RIKEN cDNA 1700120G07 gene	ncRNA	0.005000	0.452736	
mm_47454.1	chr5	123603591	123603791	-	1	NA	NA	NA	-30676	NM_029929	77573	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0.025000	0.522388	
mm_65934.1	chr7	30353240	30353440	-	1	NA	NA	NA	9432	NM_175478	233067	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	0.015000	0.532338	
mm_114837.1	chr13	92568827	92569027	+	1	NA	NA	NA	7305	NM_030237	79401	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	0.005000	0.462687	
mm_10726.1	chr2	22869279	22869479	+	1	NA	NA	NA	-26143	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.010000	0.378109	
mm_115853.1	chr13	21288705	21288905	-	1	NA	NA	NA	3881	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.010000	0.447761	
mm_164233.1	chr15	90610878	90611078	+	1	NA	NA	NA	68410	NM_025815	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0.015000	0.472637	
mm_143728.1	chr17	81379015	81379215	-	1	NA	NA	NA	-314030	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.005000	0.383085	85(GTCTTTTAAAGA,-,0.00),86(TCTTTTAAAGAG,+,0.00)
mm_91365.1	chr10	29052138	29052338	-	1	NA	NA	NA	-65932	NM_026336	67719	Mm.440480	NM_026336	ENSMUSG00000015519	2310057J18Rik	2210414P04Rik|Leg1	RIKEN cDNA 2310057J18 gene	protein-coding	0.000000	0.547264	
mm_100256.1	chr11	117331629	117331829	+	1	NA	NA	NA	14	NM_017380	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.015000	0.606965	
mm_26374.1	chr3	142564472	142564672	+	1	NA	NA	NA	4076	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.005000	0.308458	
mm_147595.1	chr18	56707305	56707505	-	1	NA	NA	NA	-408	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.110000	0.661692	
mm_140768.1	chr17	17624949	17625149	-	1	NA	NA	NA	-560	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.070000	0.641791	
mm_103085.1	chr11	69917157	69917357	-	1	NA	NA	NA	3065	NM_019726	56310	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953	G protein pathway suppressor 2	protein-coding	0.015000	0.562189	
mm_124982.1	chr15	20861261	20861461	+	1	NA	NA	NA	-194611	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.005000	0.358209	
mm_11679.1	chr2	35503427	35503627	+	1	NA	NA	NA	-42078	NM_001145821	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.020000	0.502488	
mm_161136.1	chr13	9765194	9765394	-	1	NA	NA	NA	27	NM_001347474	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.060000	0.547264	
mm_119072.1	chr14	30870565	30870765	+	1	NA	NA	NA	-8592	NM_181390	66175	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0.005000	0.527363	
mm_63819.1	chr7	134031112	134031312	+	1	NA	NA	NA	193885	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.005000	0.557214	
mm_97983.1	chr11	83885774	83885974	+	1	NA	NA	NA	32914	NM_001291269	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.010000	0.407960	
mm_146452.1	chr18	86394860	86395060	+	1	NA	NA	NA	8	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.045000	0.656716	
mm_63511.1	chr7	127848798	127848998	+	1	NA	NA	NA	7090	NM_009294	20909	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.025000	0.452736	
mm_123386.1	chr14	63321467	63321667	-	1	NA	NA	NA	-76296	NM_001310610	14463	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0.005000	0.497512	
mm_166652.1	chr6	86615528	86615728	+	1	NA	NA	NA	-12546	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.010000	0.477612	
mm_106931.1	chr12	8521834	8522034	+	1	NA	NA	NA	17632	NM_001038660	328059	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	0.010000	0.527363	
mm_37885.1	chr4	132510388	132510588	-	1	NA	NA	NA	-32	NM_144907	230784	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0.100000	0.711443	
mm_148502.1	chr19	4194943	4195143	+	1	NA	NA	NA	2869	NM_031868	19045	Mm.1970	NM_031868	ENSMUSG00000040385	Ppp1ca	Ppp1c|dism2	protein phosphatase 1, catalytic subunit, alpha isoform	protein-coding	0.030000	0.552239	
mm_167980.1	chrX	161717549	161717749	+	1	NA	NA	NA	96	NM_198409	24004	Mm.328503	NM_198409	ENSMUSG00000043518	Rai2	3f8	retinoic acid induced 2	protein-coding	0.080000	0.686567	
mm_146690.1	chr18	12863280	12863480	-	1	NA	NA	NA	0	NM_001252490	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.015000	0.472637	
mm_115950.1	chr13	23746324	23746524	-	1	NA	NA	NA	-310	NM_175664	319178	Mm.390567	NM_175664	ENSMUSG00000075031	Hist1h2bb	H2b-143	histone cluster 1, H2bb	protein-coding	0.100000	0.626866	
mm_134926.1	chr16	30587467	30587667	-	1	NA	NA	NA	22	NM_178069	224092	Mm.567	NM_178069	ENSMUSG00000022538	Lsg1	5830465I20|AA409273|D16Bwg1547e	large 60S subunit nuclear export GTPase 1	protein-coding	0.080000	0.582090	
mm_102231.1	chr11	54917794	54917994	-	1	NA	NA	NA	15040	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.025000	0.547264	
mm_130515.1	chr15	98863898	98864098	-	1	NA	NA	NA	7207	NM_001033276	381022	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.020000	0.611940	
mm_4664.1	chr1	180368043	180368243	+	1	NA	NA	NA	-37594	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.045000	0.552239	
mm_138732.1	chr17	36958603	36958803	+	1	NA	NA	NA	111	NM_029602	76416	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	0.060000	0.522388	
mm_139803.1	chr17	66123489	66123689	+	1	NA	NA	NA	69	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.115000	0.661692	
mm_17478.1	chr2	28561116	28561316	-	1	NA	NA	NA	2187	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.020000	0.567164	
mm_121735.1	chr14	18331006	18331206	-	1	NA	NA	NA	738	NM_009455	22194	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	0.060000	0.601990	
mm_76750.1	chr8	95434574	95434774	-	1	NA	NA	NA	195	NM_008187	14894	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.130000	0.706468	
mm_939.1	chr1	56019777	56019977	+	1	NA	NA	NA	899	NR_126076	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	0.015000	0.472637	
mm_105830.1	chr11	113201741	113201941	-	1	NA	NA	NA	-3	NR_015556	72386	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.070000	0.592040	-33(CTCTATAAAAAA,-,0.00)
mm_156425.1	chrX	140953789	140953989	+	1	NA	NA	NA	2822	NM_016883	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	0.010000	0.452736	
mm_11386.1	chr2	31314183	31314383	+	1	NA	NA	NA	68360	NM_019681	14299	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.095000	0.706468	
mm_87369.1	chr10	44211278	44211478	+	1	NA	NA	NA	-4047	NR_027506	70365	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	0.005000	0.487562	
mm_45127.1	chr5	48599894	48600094	-	1	NA	NA	NA	-312	NM_001199245	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.020000	0.587065	
mm_36958.1	chr4	109156635	109156835	-	1	NA	NA	NA	-38699	NM_001134791	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.045000	0.497512	
mm_110808.1	chr12	72216713	72216913	-	1	NA	NA	NA	18933	NR_104446	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.015000	0.427861	
mm_144839.1	chr18	36559888	36560088	+	1	NA	NA	NA	-615	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.080000	0.601990	
mm_69774.1	chr7	141016807	141017007	-	1	NA	NA	NA	-15	NM_001033632	213002	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.000000	0.462687	-34(TTCTATAAAAGT,-,0.00)
mm_110873.1	chr12	73781351	73781551	-	1	NA	NA	NA	-119873	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.015000	0.462687	-86(GTCTCTATAAAG,-,0.00)
mm_116752.1	chr13	51848204	51848404	-	1	NA	NA	NA	1629	NM_011817	23882	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.065000	0.626866	
mm_137754.1	chr17	29464368	29464568	+	1	NA	NA	NA	-26577	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.035000	0.532338	
mm_66794.1	chr7	47132328	47132528	-	1	NA	NA	NA	170	NM_001163565	19259	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0.110000	0.681592	
mm_166326.1	chr5	112292080	112292280	+	1	NA	NA	NA	15489	NM_009419	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.025000	0.557214	
mm_63893.1	chr7	138846501	138846701	+	1	NA	NA	NA	215	NM_026391	52432	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	0.150000	0.771144	
mm_138155.1	chr17	34238804	34239004	+	1	NA	NA	NA	-1	NM_010389	15002	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	0.010000	0.467662	
mm_48505.1	chr5	142817512	142817712	-	1	NA	NA	NA	-225	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.050000	0.467662	
mm_70505.1	chr8	12915584	12915784	+	1	NA	NA	NA	-209	NM_178076	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.050000	0.631841	
mm_160123.1	chr7	27927373	27927573	-	1	NA	NA	NA	1957	NM_028538	73430	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	0.005000	0.482587	
mm_103071.1	chr11	69880802	69881002	-	1	NA	NA	NA	83	NM_153143	216858	Mm.239498	NM_153143	ENSMUSG00000046731	Kctd11	AF465352|Ren	potassium channel tetramerisation domain containing 11	protein-coding	0.040000	0.616915	
mm_151887.1	chr19	5798593	5798793	-	1	NA	NA	NA	-2712	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.010000	0.412935	15(GCCTCTTAAAAA,-,0.00)
mm_44966.1	chr5	36748567	36748767	-	1	NA	NA	NA	12	NM_133724	117197	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0.105000	0.641791	
mm_3680.1	chr1	153695409	153695609	+	1	NA	NA	NA	29836	NM_001347115	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding	0.020000	0.507463	
mm_96663.1	chr11	69409193	69409393	+	1	NA	NA	NA	4382	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.040000	0.601990	
mm_172116.1	chr6	3200940	3201140	+	1	NA	NA	NA	-87479	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.040000	0.477612	
mm_75748.1	chr8	69893882	69894082	-	1	NA	NA	NA	-6590	NM_026818	68709	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	0.050000	0.626866	-34(ACACTTAAAAGG,-,0.00)
mm_156950.1	chrX	169986522	169986722	+	1	NA	NA	NA	-7705	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.020000	0.577114	
mm_166009.1	chr4	117649858	117650058	+	1	NA	NA	NA	32267	NM_023178	66233	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	0.015000	0.517413	
mm_18878.1	chr2	76360307	76360507	-	1	NA	NA	NA	46	NM_009989	13067	Mm.4872	NM_009989	ENSMUSG00000056436	Cyct	T-Cc	cytochrome c, testis	protein-coding	0.030000	0.611940	-7(GCCTTTAAGAGG,-,0.00),-6(CCTTTAAGAGGA,+,0.00)
mm_33811.1	chr4	135176016	135176216	+	1	NA	NA	NA	55471	NM_019732	12399	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.000000	0.547264	
mm_40909.1	chr5	75590230	75590430	+	1	NA	NA	NA	15339	NM_021099	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	KIT proto-oncogene receptor tyrosine kinase	protein-coding	0.015000	0.398010	
mm_140649.1	chr17	12691904	12692104	-	1	NA	NA	NA	-16166	NM_009202	20517	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.025000	0.467662	
mm_150585.1	chr19	40660391	40660591	+	1	NA	NA	NA	721	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.010000	0.492537	-34(TTCTCTTAAAAG,-,0.00)
mm_54948.1	chr6	48613666	48613866	-	1	NA	NA	NA	586	NM_173429	243372	Mm.435190	NM_173429	ENSMUSG00000007216	Zfp775	C130032F08Rik|Znf775	zinc finger protein 775	protein-coding	0.005000	0.522388	
mm_73923.1	chr8	119811242	119811442	+	1	NA	NA	NA	29237	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.020000	0.477612	
mm_25744.1	chr3	123016465	123016665	+	1	NA	NA	NA	18422	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.020000	0.457711	
mm_106594.1	chr11	120730558	120730758	-	1	NA	NA	NA	1363	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.010000	0.557214	
mm_37468.1	chr4	123527597	123527797	-	1	NA	NA	NA	-88723	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.025000	0.497512	
mm_152059.1	chr19	6363122	6363322	-	1	NA	NA	NA	-468	NM_011750	22668	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.015000	0.437811	-29(GTGTATTTAAAG,-,0.00),-27(GTATTTAAAGAC,+,0.00)
mm_7173.1	chr1	92180125	92180325	-	1	NA	NA	NA	116	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.155000	0.746269	
mm_49215.1	chr6	15749457	15749657	+	1	NA	NA	NA	28896	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.015000	0.328358	
mm_81788.1	chr9	114978347	114978547	+	1	NA	NA	NA	-44460	NM_175380	333433	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	0.050000	0.676617	
mm_92216.1	chr10	68249149	68249349	-	1	NA	NA	NA	29477	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.015000	0.333333	
mm_4516.1	chr1	174501769	174501969	+	1	NA	NA	NA	44	NM_019445	54418	Mm.330620	NM_019445	ENSMUSG00000028354	Fmn2	AU024104	formin 2	protein-coding	0.095000	0.701493	
mm_23168.1	chr3	40745239	40745439	+	1	NA	NA	NA	-274	NM_011020	18415	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0.155000	0.791045	
mm_27162.1	chr3	33143042	33143242	-	1	NA	NA	NA	49	NM_001163516	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.170000	0.796020	
mm_18040.1	chr2	38926325	38926525	-	1	NA	NA	NA	36	NM_010264	14536	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	0.095000	0.686567	
mm_55141.1	chr6	51463391	51463591	-	1	NA	NA	NA	6403	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.000000	0.383085	
mm_36331.1	chr4	72137023	72137223	-	1	NA	NA	NA	63770	NM_011599	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.010000	0.487562	
mm_140679.1	chr17	12992421	12992621	-	1	NA	NA	NA	18	NM_175394	60532	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.145000	0.761194	
mm_40246.1	chr5	38076403	38076603	+	1	NA	NA	NA	37273	NM_026959	71116	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0.010000	0.442786	
mm_147798.1	chr18	61657892	61658092	-	1	NA	NA	NA	7546	NR_045402	328968	Mm.392305	NR_045402		Carmn	Carmen|E330013P06|Gm16908|Mir143hg	cardiac mesoderm enhancer-associated non-coding RNA	ncRNA	0.005000	0.482587	
mm_166971.1	chr7	44595168	44595368	+	1	NA	NA	NA	4382	NM_001290682	16504	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.045000	0.572139	
mm_100705.1	chr11	3648674	3648874	-	1	NA	NA	NA	40	NR_002321	544752	Mm.390314	NR_002321	ENSMUSG00000056579	Tug1	AI316828	taurine upregulated gene 1	ncRNA	0.165000	0.711443	
mm_153465.1	chr19	41264188	41264388	-	1	NA	NA	NA	-284	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.080000	0.597015	
mm_122604.1	chr14	51050568	51050768	-	1	NA	NA	NA	-505	NM_001011877	497113	Mm.379741	NM_001011877	ENSMUSG00000059648	Rnase11	Raj1	ribonuclease, RNase A family, 11 (non-active)	protein-coding	0.010000	0.502488	
mm_130912.1	chr15	102553743	102553943	-	1	NA	NA	NA	-29222	NM_018787	54615	Mm.445915	NM_018787	ENSMUSG00000023052	Npff	-	neuropeptide FF-amide peptide precursor	protein-coding	0.005000	0.492537	
mm_126228.1	chr15	78935099	78935299	+	1	NA	NA	NA	266	NM_133800	97961	Mm.157216	NM_133800	ENSMUSG00000033099	Nol12	C78541|Nop25	nucleolar protein 12	protein-coding	0.120000	0.721393	
mm_43192.1	chr5	128736145	128736345	+	1	NA	NA	NA	-1	NM_021311	57749	Mm.272720	NM_021311	ENSMUSG00000029423	Piwil1	MIWI	piwi-like RNA-mediated gene silencing 1	protein-coding	0.065000	0.696517	
mm_171001.1	chr2	76955398	76955598	+	1	NA	NA	NA	27049	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.055000	0.641791	
mm_112368.1	chr12	119181999	119182199	-	1	NA	NA	NA	56177	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.015000	0.417910	
mm_142318.1	chr17	43113099	43113299	-	1	NA	NA	NA	45092	NR_045155	545207	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0.000000	0.348259	
mm_61028.1	chr7	49522688	49522888	+	1	NA	NA	NA	114047	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.050000	0.597015	-87(GCACTTTAAAGG,-,0.00)
mm_57316.1	chr6	124728350	124728550	-	1	NA	NA	NA	4704	NM_013545	15170	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.050000	0.577114	
mm_4528.1	chr1	175632058	175632258	+	1	NA	NA	NA	-35	NM_133809	98256	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	0.015000	0.457711	
mm_157348.1	chrX	36989395	36989595	-	1	NA	NA	NA	200	NM_001177324	56526	Mm.260036	NM_019942	ENSMUSG00000050379	Sept6	2810035H17Rik|C920001C06Rik|Sep6|mKIAA0128	septin 6	protein-coding	0.060000	0.641791	
mm_6969.1	chr1	86226478	86226678	-	1	NA	NA	NA	71798	NM_001310702	78795	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.005000	0.477612	88(GCGTCTTTAAGG,-,0.00)
mm_110444.1	chr12	51030044	51030244	-	1	NA	NA	NA	24988	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA	0.020000	0.452736	
mm_140463.1	chr17	91088769	91088969	+	1	NA	NA	NA	736	NM_001346957	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.030000	0.601990	
mm_51917.1	chr6	91233923	91234123	+	1	NA	NA	NA	21259	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.005000	0.592040	
mm_109447.1	chr12	110954095	110954295	+	1	NA	NA	NA	24826	NM_175207	74251	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0.005000	0.407960	
mm_23943.1	chr3	84593455	84593655	+	1	NA	NA	NA	-19	NM_207278	403175	Mm.83086	NM_207278	ENSMUSG00000047819	Tigd4	C130063O11Rik|Gm418	tigger transposable element derived 4	protein-coding	0.005000	0.402985	
mm_31038.1	chr4	41000890	41001090	+	1	NA	NA	NA	7295	NR_037277	100526501		NR_037277	ENSMUSG00000092862	Mir3094	mir-3094|mmu-mir-3094	microRNA 3094	ncRNA	0.005000	0.368159	
mm_29218.1	chr3	107092816	107093016	-	1	NA	NA	NA	-8651	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.000000	0.378109	
mm_149289.1	chr19	10669266	10669466	+	1	NA	NA	NA	8705	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.020000	0.522388	
mm_160969.1	chr11	99809792	99809992	-	1	NA	NA	NA	0	NM_001099313	670482	Mm.386956	NM_001099313	ENSMUSG00000078259	Gm11554	OTTMUSG00000002180	predicted gene 11554	protein-coding	0.000000	0.497512	-34(GGGTATAAAAGG,-,0.00)
mm_114421.1	chr13	64410679	64410879	+	1	NA	NA	NA	-21774	NM_053180	105278	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	0.020000	0.512438	
mm_109092.1	chr12	104819146	104819346	+	1	NA	NA	NA	45830	NR_104436	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.030000	0.487562	
mm_28911.1	chr3	98760463	98760663	-	1	NA	NA	NA	1847	NM_001161745	15494	Mm.158717	NM_001012306	ENSMUSG00000062410	Hsd3b3	9030618K22Rik|AI790201	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 3	protein-coding	0.000000	0.313433	4(TCTTTAATACCA,+,0.00)
mm_3992.1	chr1	164443179	164443379	+	1	NA	NA	NA	15076	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.035000	0.507463	
mm_104298.1	chr11	90390707	90390907	-	1	NA	NA	NA	110	NM_172563	217082	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0.120000	0.706468	
mm_81882.1	chr9	119341353	119341553	+	1	NA	NA	NA	159	NM_130864	113868	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	0.075000	0.631841	
mm_79230.1	chr9	50494153	50494353	+	1	NA	NA	NA	-272	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.025000	0.477612	
mm_53085.1	chr6	124996953	124997153	+	1	NA	NA	NA	333	NM_175696	319352	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.060000	0.676617	
mm_69991.1	chr7	142383382	142383582	-	1	NA	NA	NA	4388	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.030000	0.517413	
mm_160474.1	chr8	119612500	119612700	+	1	NA	NA	NA	-147	NM_029428	75773	Mm.159566	NM_029428	ENSMUSG00000024266	Adad2	4930403J07Rik	adenosine deaminase domain containing 2	protein-coding	0.055000	0.621891	
mm_32082.1	chr4	98395753	98395953	+	1	NA	NA	NA	27	NM_172696	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.125000	0.751244	
mm_42184.1	chr5	112267422	112267622	+	1	NA	NA	NA	-9169	NM_001326590	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.035000	0.547264	32(GACCTTATAAAC,-,0.00),34(CCTTATAAACCC,+,0.00)
mm_86839.1	chr10	21396059	21396259	+	1	NA	NA	NA	18859	NM_178713	237320	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0.010000	0.482587	
mm_119616.1	chr14	51114335	51114535	+	1	NA	NA	NA	-2118	NM_203508	219026	Mm.297297	NM_203508	ENSMUSG00000072575	Eddm3b	Fam12|Gm75	epididymal protein 3B	protein-coding	0.015000	0.497512	
mm_112429.1	chr13	4249607	4249807	+	1	NA	NA	NA	972	NR_028405	111002	Mm.482672	NR_028405		Marcksl1-ps4	Gm16264|Mlp-rs4|Mrp-rs4|OTTMUSG00000032901	MARCKS-like 1, pseudogene 4	pseudo	0.015000	0.328358	-46(CTTTTAATGGCC,+,0.00)
mm_138730.1	chr17	36958491	36958691	+	1	NA	NA	NA	-1	NM_029602	76416	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	0.115000	0.611940	
mm_144551.1	chr18	31324373	31324573	+	1	NA	NA	NA	-7345	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding	0.005000	0.452736	
mm_30682.1	chr4	11202312	11202512	+	1	NA	NA	NA	10703	NM_001282943	12448	Mm.35867	NM_009830	ENSMUSG00000028212	Ccne2	-	cyclin E2	protein-coding	0.005000	0.293532	
mm_108251.1	chr12	78226643	78226843	+	1	NA	NA	NA	88	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.120000	0.686567	
mm_122815.1	chr14	54605822	54606022	-	1	NA	NA	NA	-14	NM_028890	74359	Mm.79815	NM_028890	ENSMUSG00000022179	4931414P19Rik	-	RIKEN cDNA 4931414P19 gene	protein-coding	0.095000	0.557214	
mm_104633.1	chr11	97500259	97500459	-	1	NA	NA	NA	-19	NM_001289118	100141474	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.140000	0.771144	
mm_41993.1	chr5	107754999	107755199	+	1	NA	NA	NA	-29294	NM_001267621	14581	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.010000	0.393035	-34(ATCTTTTTAAGC,-,0.00),-32(CTTTTTAAGCTG,+,0.00)
mm_59354.1	chr7	25670346	25670546	+	1	NA	NA	NA	4720	NM_001290497	320208	Mm.207484	NM_177102	ENSMUSG00000061702	Tmem91	A830041P22Rik|DSPC3	transmembrane protein 91	protein-coding	0.005000	0.462687	
mm_139001.1	chr17	45563851	45564051	+	1	NA	NA	NA	-201	NM_028662	73836	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.110000	0.761194	
mm_165957.1	chr4	87230004	87230204	-	1	NA	NA	NA	436	NM_172426	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	0.050000	0.656716	
mm_118822.1	chr14	25564183	25564383	+	1	NA	NA	NA	-22521	NR_033492	77592	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0.000000	0.527363	-7(GCCTTAATGCCC,+,0.00)
mm_109417.1	chr12	110485698	110485898	+	1	NA	NA	NA	59	NM_012023	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.030000	0.502488	
mm_102937.1	chr11	69601079	69601279	-	1	NA	NA	NA	4781	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.010000	0.532338	
mm_136474.1	chr16	95769022	95769222	-	1	NA	NA	NA	66715	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.000000	0.477612	
mm_20315.1	chr2	127301936	127302136	-	1	NA	NA	NA	31807	NM_139308	99138	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0.010000	0.467662	-40(CCTCTTAAGGCA,+,0.00)
mm_153535.1	chr19	41911716	41911916	-	1	NA	NA	NA	-55	NM_023418	18648	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	0.125000	0.681592	
mm_157234.1	chrX	16911583	16911783	-	1	NA	NA	NA	91	NM_010883	17986	Mm.5014	NM_010883	ENSMUSG00000040138	Ndp	ND|Ndph	Norrie disease (pseudoglioma) (human)	protein-coding	0.040000	0.517413	
mm_76805.1	chr8	104310010	104310210	-	1	NA	NA	NA	35	NM_181990	100504164	Mm.443302	NM_181990	ENSMUSG00000110430	Cmtm1	CHLFH1a|CKLFH|CKLFH1|Cklfsf1	CKLF-like MARVEL transmembrane domain containing 1	protein-coding	0.040000	0.587065	
mm_135565.1	chr16	50168859	50169059	-	1	NA	NA	NA	-96107	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.005000	0.492537	-37(GGGTATATAAAC,-,0.00)
mm_134245.1	chr16	13423633	13423833	-	1	NA	NA	NA	-25790	NR_030549	100124432		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0.020000	0.527363	
mm_38247.1	chr4	136602601	136602801	-	1	NA	NA	NA	22	NM_133872	99982	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	0.150000	0.741294	
mm_805.1	chr1	45348814	45349014	+	1	NA	NA	NA	37376	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.005000	0.293532	
mm_163388.1	chr12	55961409	55961609	-	1	NA	NA	NA	125143	NM_001037756	52592	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0.020000	0.492537	
mm_24104.1	chr3	88141062	88141262	+	1	NA	NA	NA	-1210	NM_001310587	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.020000	0.512438	-86(GGGTTGAAAAGG,-,0.00),47(GGCCCTAAAAGG,-,0.00),49(CCCTAAAAGGGC,+,0.00)
mm_48275.1	chr5	137962998	137963198	-	1	NA	NA	NA	-139	NM_080450	118446	Mm.332771	NM_080450	ENSMUSG00000056966	Gjc3	Cx29|Gje1	gap junction protein, gamma 3	protein-coding	0.030000	0.487562	57(TCTTTTATGCTG,+,0.00)
mm_96744.1	chr11	69846573	69846773	+	1	NA	NA	NA	29	NR_033133	70310	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	0.060000	0.676617	
mm_160283.1	chr7	123169574	123169774	+	1	NA	NA	NA	-45192	NM_146198	233836	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.010000	0.492537	
mm_107824.1	chr12	69159189	69159389	+	1	NA	NA	NA	-103	NM_009093	20090	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0.095000	0.651741	
mm_136526.1	chr16	97460386	97460586	-	1	NA	NA	NA	2419	NM_010846	17857	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.000000	0.472637	
mm_16069.1	chr2	168081013	168081213	+	1	NA	NA	NA	109	NM_021409	58220	Mm.292834	NM_021409	ENSMUSG00000044641	Pard6b	AV025615|Par6b	par-6 family cell polarity regulator beta	protein-coding	0.135000	0.776119	
mm_144810.1	chr18	36287018	36287218	+	1	NA	NA	NA	5956	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.135000	0.756219	
mm_150090.1	chr19	29454163	29454363	+	1	NA	NA	NA	43344	NM_021396	58205	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.010000	0.457711	
mm_140707.1	chr17	14694133	14694333	-	1	NA	NA	NA	29	NM_011581	21826	Mm.26688	NM_011581	ENSMUSG00000023885	Thbs2	TSP2|Thbs-2	thrombospondin 2	protein-coding	0.035000	0.552239	
mm_19134.1	chr2	80300864	80301064	-	1	NA	NA	NA	8494	NM_177256	320769	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	0.005000	0.432836	-35(GGTTATAAAAAC,-,0.00)
mm_25184.1	chr3	103329018	103329218	+	1	NA	NA	NA	49825	NM_001079830	94093	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.005000	0.412935	-96(TTTTTTAAACCC,+,0.00)
mm_54863.1	chr6	42597454	42597654	-	1	NA	NA	NA	-182	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.010000	0.482587	
mm_104266.1	chr11	88995645	88995845	-	1	NA	NA	NA	-3658	NM_009546	217069	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.000000	0.472637	
mm_83976.1	chr9	57262472	57262672	-	1	NA	NA	NA	27	NM_028820	74211	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.145000	0.766169	
mm_102999.1	chr11	69687193	69687393	-	1	NA	NA	NA	-1739	NM_023517	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.015000	0.567164	
mm_165512.1	chr2	172972404	172972604	+	1	NA	NA	NA	-7338	NM_012046	26972	Mm.23495	NM_012046	ENSMUSG00000005883	Spo11	AI449549|Spo11a|Spo11b	SPO11 meiotic protein covalently bound to DSB	protein-coding	0.005000	0.507463	
mm_74447.1	chr8	4213358	4213558	-	1	NA	NA	NA	3854	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.015000	0.606965	
mm_167068.1	chr7	99353129	99353329	-	1	NA	NA	NA	10	NM_009825	12406	Mm.22708	NM_009825	ENSMUSG00000070436	Serpinh1	BERF-1|Cbp1|Cbp2|Hsp47|J6|Serpinh2|gp46	serine (or cysteine) peptidase inhibitor, clade H, member 1	protein-coding	0.040000	0.636816	81(CCATATATAGAT,+,0.00)
mm_120797.1	chr14	74735592	74735792	+	1	NA	NA	NA	3395	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.025000	0.457711	
mm_31998.1	chr4	92147203	92147403	+	1	NA	NA	NA	-82	NM_027034	69314	Mm.55891	NM_027034	ENSMUSG00000028533	Izumo3	1700011H22Rik	IZUMO family member 3	protein-coding	0.000000	0.422886	
mm_80485.1	chr9	78257023	78257223	+	1	NA	NA	NA	-6	NM_001243092	100042295	Mm.197422	NM_001243092	ENSMUSG00000111709	Gm3776	-	predicted gene 3776	protein-coding	0.005000	0.497512	
mm_79569.1	chr9	58134168	58134368	+	1	NA	NA	NA	193	NM_001162476	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.015000	0.517413	
mm_107578.1	chr12	44525514	44525714	+	1	NA	NA	NA	196729	NM_001146031	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.020000	0.482587	
mm_170327.1	chr18	42913873	42914073	+	1	NA	NA	NA	-14467	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.010000	0.412935	
mm_100112.1	chr11	115814655	115814855	+	1	NA	NA	NA	16	NM_029557	76265	Mm.275438	NM_029557	ENSMUSG00000020781	Tsen54	0610034P02Rik	tRNA splicing endonuclease subunit 54	protein-coding	0.145000	0.741294	
mm_119958.1	chr14	55221907	55222107	+	1	NA	NA	NA	0	NM_027790	71412	Mm.85484	NM_027790	ENSMUSG00000022209	Dhrs2	5430405K24Rik|Hep27	dehydrogenase/reductase member 2	protein-coding	0.040000	0.542289	-38(ACCTCTATAAAG,-,0.00)
mm_166994.1	chr7	46715167	46715367	-	1	NA	NA	NA	409	NM_011315	20210	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	0.000000	0.388060	
mm_143189.1	chr17	58991293	58991493	-	1	NA	NA	NA	-18	NM_027001	69239	Mm.246732	NM_027001	ENSMUSG00000024227	Pdzph1	2610034M16Rik|AV114557	PDZ and pleckstrin homology domains 1	protein-coding	0.020000	0.383085	
mm_81114.1	chr9	106453840	106454040	+	1	NA	NA	NA	102	NM_021567	59092	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	0.125000	0.751244	
mm_84282.1	chr9	62812724	62812924	-	1	NA	NA	NA	-1176	NM_010193	14155	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.005000	0.472637	
mm_41642.1	chr5	98031177	98031377	+	1	NA	NA	NA	-315	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.075000	0.611940	
mm_156076.1	chrX	109161762	109161962	+	1	NA	NA	NA	-34894	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.000000	0.363184	
mm_129202.1	chr15	76511903	76512103	-	1	NA	NA	NA	-185	NM_010046	13350	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	0.110000	0.666667	
mm_137725.1	chr17	29268797	29268997	+	1	NA	NA	NA	109	NM_030561	80748	Mm.290116	NM_030561	ENSMUSG00000052712	BC004004	2400006G15Rik	cDNA sequence BC004004	protein-coding	0.125000	0.726368	
mm_39526.1	chr5	21266195	21266395	+	1	NA	NA	NA	80028	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.000000	0.472637	
mm_97152.1	chr11	75463577	75463777	+	1	NA	NA	NA	-39	NR_029739	387141		NR_029739	ENSMUSG00000065529	Mir22	Mirn22|mmu-mir-22	microRNA 22	ncRNA	0.010000	0.527363	8(CCTTTTAGGAAC,+,0.00)
mm_132355.1	chr16	34649832	34650032	+	1	NA	NA	NA	-1279	NM_030744	76378	Mm.23515	NM_030744	ENSMUSG00000022832	Ropn1	1700008N21Rik|ODF6|RHPNAP1|Rppn|ropporin	ropporin, rhophilin associated protein 1	protein-coding	0.040000	0.641791	
mm_63118.1	chr7	122671375	122671575	+	1	NA	NA	NA	-269	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.040000	0.597015	
mm_124127.1	chr14	79703951	79704151	-	1	NA	NA	NA	1131	NR_045060	73989	Mm.107775	NR_045060		4930452G13Rik	-	RIKEN cDNA 4930452G13 gene	ncRNA	0.030000	0.537313	
mm_137158.1	chr17	23749236	23749436	+	1	NA	NA	NA	100	NR_015472	638247	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	0.020000	0.557214	
mm_130961.1	chr15	103314870	103315070	-	1	NA	NA	NA	-4532	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.045000	0.666667	
mm_46503.1	chr5	105134599	105134799	-	1	NA	NA	NA	4853	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.398010	
mm_148537.1	chr19	4602996	4603196	+	1	NA	NA	NA	8777	NM_008797	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.040000	0.567164	
mm_106076.1	chr11	116174335	116174535	-	1	NA	NA	NA	-6257	NM_172571	217335	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.030000	0.472637	
mm_6357.1	chr1	71896349	71896549	-	1	NA	NA	NA	8337	NR_027659	667931	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	0.020000	0.477612	-32(GCCTTTAAACTG,+,0.00)
mm_133568.1	chr16	91406052	91406252	+	1	NA	NA	NA	-83	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.050000	0.616915	
mm_115065.1	chr13	101397570	101397770	+	1	NA	NA	NA	-90	NR_046187	78136	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	0.000000	0.432836	
mm_110659.1	chr12	59070150	59070350	-	1	NA	NA	NA	3331	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.040000	0.482587	
mm_152447.1	chr19	10829486	10829686	-	1	NA	NA	NA	472	NM_001037801	12511	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.025000	0.572139	-62(ACCCCTTAAAGG,-,0.00),-61(CCCCTTAAAGGG,+,0.00),-61(CCCCTTAAAGGG,-,0.00),-60(CCCTTAAAGGGC,+,0.00),-59(CCTTAAAGGGCC,+,0.00),-35(CATCATAAAAGG,-,0.00)
mm_4087.1	chr1	167001340	167001540	+	1	NA	NA	NA	23	NM_001160261	226610	Mm.389217	NM_175461	ENSMUSG00000060568	Fam78b	C030014K22Rik|C030020L09Rik	family with sequence similarity 78, member B	protein-coding	0.175000	0.815920	
mm_9177.1	chr1	171057949	171058149	-	1	NA	NA	NA	1354	NM_010188	14131	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	0.020000	0.507463	
mm_44414.1	chr5	17888689	17888889	-	1	NA	NA	NA	170	NM_001159558	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.020000	0.477612	
mm_97910.1	chr11	83473049	83473249	+	1	NA	NA	NA	41	NM_027427	70439	Mm.181050	NM_027427	ENSMUSG00000020680	Taf15	2610111C21Rik|68kDa|TAFII68|Taf2n	TATA-box binding protein associated factor 15	protein-coding	0.140000	0.726368	
mm_97766.1	chr11	82036089	82036289	+	1	NA	NA	NA	612	NM_011333	20296	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.005000	0.378109	89(GTTTTAATGGCA,+,0.00)
mm_157844.1	chrX	74392691	74392891	-	1	NA	NA	NA	483	NM_025473	66294	Mm.166485	NM_025473	ENSMUSG00000031399	Fam3a	1810037C20Rik	family with sequence similarity 3, member A	protein-coding	0.020000	0.572139	
mm_57063.1	chr6	122545265	122545465	-	1	NA	NA	NA	-8444	NM_009645	11628	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.005000	0.467662	
mm_25202.1	chr3	103791060	103791260	+	1	NA	NA	NA	115	NM_001301306	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.150000	0.840796	
mm_88453.1	chr10	77555296	77555496	+	1	NA	NA	NA	25048	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.000000	0.467662	
mm_35060.1	chr4	6453539	6453739	-	1	NA	NA	NA	632	NM_010945	18201	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.085000	0.636816	
mm_53065.1	chr6	124914055	124914255	+	1	NA	NA	NA	-2450	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.025000	0.621891	
mm_90422.1	chr10	127481595	127481795	+	1	NA	NA	NA	-20022	NM_177707	237611	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0.025000	0.567164	
mm_150363.1	chr19	34649207	34649407	+	1	NA	NA	NA	8418	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.005000	0.318408	
mm_48439.1	chr5	140627172	140627372	-	1	NA	NA	NA	19931	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.045000	0.601990	
mm_126329.1	chr15	79892285	79892485	+	1	NA	NA	NA	-23	NM_001160415	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.030000	0.601990	
mm_124452.1	chr14	118925371	118925571	-	1	NA	NA	NA	-1	NM_025943	66573	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	0.070000	0.661692	
mm_37370.1	chr4	120924891	120925091	-	1	NA	NA	NA	14	NM_028457	73172	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	0.055000	0.626866	
mm_52842.1	chr6	121838360	121838560	+	1	NA	NA	NA	-81	NM_008645	17836	Mm.1311	NM_008645	ENSMUSG00000059908	Mug1	-	murinoglobulin 1	protein-coding	0.010000	0.412935	
mm_53639.1	chr6	140622517	140622717	+	1	NA	NA	NA	-46	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.015000	0.512438	
mm_44214.1	chr5	4757702	4757902	-	1	NA	NA	NA	414	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.145000	0.736318	
mm_93122.1	chr10	91171418	91171618	-	1	NA	NA	NA	101	NM_001080132	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.100000	0.721393	
mm_109110.1	chr12	105453775	105453975	+	1	NA	NA	NA	19	NM_001252508	268595	Mm.2388	NM_001252508	ENSMUSG00000094910	D430019H16Rik	AI852661	RIKEN cDNA D430019H16 gene	protein-coding	0.085000	0.736318	
mm_24429.1	chr3	90539583	90539783	+	1	NA	NA	NA	-1540	NM_026416	67860	Mm.331185	NM_026416	ENSMUSG00000074457	S100a16	2300002L21Rik|AI325039|AI663996|DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding	0.020000	0.537313	
mm_110054.1	chr12	20815663	20815863	-	1	NA	NA	NA	16	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.115000	0.736318	
mm_148685.1	chr19	5700683	5700883	+	1	NA	NA	NA	-3688	NM_010609	16530	Mm.440033	NM_010609	ENSMUSG00000024936	Kcnk7	2310014G03Rik|Kcnk6|Kcnk8|Knot|Mlk3	potassium channel, subfamily K, member 7	protein-coding	0.050000	0.641791	
mm_14358.1	chr2	129615597	129615797	+	1	NA	NA	NA	22528	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.020000	0.482587	
mm_110203.1	chr12	27341054	27341254	-	1	NA	NA	NA	1564	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.045000	0.507463	
mm_138358.1	chr17	34981928	34982128	+	1	NA	NA	NA	-102	NM_001204273	27756	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.155000	0.726368	
mm_29654.1	chr3	122391896	122392096	-	1	NA	NA	NA	-27784	NM_013867	29815	Mm.45815	NM_013867	ENSMUSG00000028121	Bcar3	AI131758|AND-34	breast cancer anti-estrogen resistance 3	protein-coding	0.030000	0.562189	-48(CTGCCTAAAAGC,-,0.00)
mm_157845.1	chrX	74392944	74393144	-	1	NA	NA	NA	230	NM_025473	66294	Mm.166485	NM_025473	ENSMUSG00000031399	Fam3a	1810037C20Rik	family with sequence similarity 3, member A	protein-coding	0.060000	0.606965	
mm_112646.1	chr13	16017191	16017391	+	1	NA	NA	NA	5440	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.020000	0.527363	-35(GGCCTTTAAAGA,-,0.00),-34(GCCTTTAAAGAA,+,0.00),-34(GCCTTTAAAGAA,-,0.00)
mm_127267.1	chr15	99719031	99719231	+	1	NA	NA	NA	1538	NM_010271	14555	Mm.252391	NM_010271	ENSMUSG00000023019	Gpd1	AI747587|Gdc-1|Gdc1|mKIAA4010	glycerol-3-phosphate dehydrogenase 1 (soluble)	protein-coding	0.015000	0.572139	
mm_102648.1	chr11	62951003	62951203	-	1	NA	NA	NA	-90	NM_025496	66338	Mm.46166	NM_025496	ENSMUSG00000042200	Cdrt4	1700019I23Rik	CMT1A duplicated region transcript 4	protein-coding	0.010000	0.507463	
mm_129300.1	chr15	77306919	77307119	-	1	NA	NA	NA	34	NM_001110827	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.090000	0.676617	
mm_99342.1	chr11	101552060	101552260	+	1	NA	NA	NA	53	NM_001252220	17966	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	0.050000	0.507463	
mm_119808.1	chr14	54222269	54222469	+	1	NA	NA	NA	31560	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.025000	0.497512	
mm_105365.1	chr11	103199353	103199553	-	1	NA	NA	NA	9095	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.075000	0.721393	
mm_50436.1	chr6	48846010	48846210	+	1	NA	NA	NA	4454	NM_001098271	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.005000	0.472637	
mm_102216.1	chr11	54908966	54909166	-	1	NA	NA	NA	6212	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.010000	0.482587	
mm_36715.1	chr4	98383156	98383356	-	1	NA	NA	NA	9	NM_053157	94043	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.095000	0.681592	-44(GCCCCTTTAAGG,-,0.00),-43(CCCCTTTAAGGC,-,0.00),-42(CCCTTTAAGGCC,+,0.00),-41(CCTTTAAGGCCC,+,0.00)
mm_52419.1	chr6	113442532	113442732	+	1	NA	NA	NA	63	NM_001243739	67767	Mm.2053	NM_026365	ENSMUSG00000051256	Jagn1	5830427H10Rik	jagunal homolog 1	protein-coding	0.075000	0.631841	
mm_63065.1	chr7	122130959	122131159	+	1	NA	NA	NA	1887	NM_001289844	233826	Mm.38348	NM_172744	ENSMUSG00000044702	Palb2	BC066140	partner and localizer of BRCA2	protein-coding	0.010000	0.457711	
mm_119210.1	chr14	32991298	32991498	+	1	NA	NA	NA	16	NM_026253	67580	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0.010000	0.492537	
mm_107707.1	chr12	55507747	55507947	+	1	NA	NA	NA	-15200	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.045000	0.492537	
mm_147282.1	chr18	39487008	39487208	-	1	NA	NA	NA	137	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.025000	0.547264	
mm_156843.1	chrX	164385588	164385788	+	1	NA	NA	NA	12166	NM_010216	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.000000	0.348259	
mm_114397.1	chr13	63279024	63279224	+	1	NA	NA	NA	18023	NR_045794	100504114	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	0.020000	0.572139	
mm_70277.1	chr8	3598557	3598757	+	1	NA	NA	NA	11207	NM_001347111	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.005000	0.567164	
mm_33911.1	chr4	136347211	136347411	+	1	NA	NA	NA	36369	NM_001277123	74326	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	0.000000	0.363184	
mm_48891.1	chr5	151368399	151368599	-	1	NA	NA	NA	-176	NR_045700	625175	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0.115000	0.666667	
mm_84496.1	chr9	66882361	66882561	-	1	NA	NA	NA	37244	NM_173413	235442	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.015000	0.482587	
mm_41856.1	chr5	104440261	104440461	+	1	NA	NA	NA	4169	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.030000	0.522388	
mm_135964.1	chr16	74826642	74826842	-	1	NA	NA	NA	-415830	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.000000	0.457711	
mm_101608.1	chr11	34871444	34871644	-	1	NA	NA	NA	-37903	NM_027411	70385	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0.005000	0.442786	-34(GAGTATAAATAG,-,0.00)
mm_130881.1	chr15	102247949	102248149	-	1	NA	NA	NA	-1549	NM_001042727	19411	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.040000	0.626866	
mm_127638.1	chr15	102473399	102473599	+	1	NA	NA	NA	2867	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.005000	0.467662	
mm_93953.1	chr10	127263018	127263218	-	1	NA	NA	NA	245	NM_008447	16572	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	0.130000	0.731343	
mm_53056.1	chr6	124829404	124829604	+	1	NA	NA	NA	-20	NM_013700	22225	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	0.080000	0.621891	
mm_111419.1	chr12	91588261	91588461	-	1	NA	NA	NA	1288	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.075000	0.567164	-71(GCTTTTCAGGCC,+,0.00),-44(CCATTTAAACAC,+,0.00),-25(GGCTTTAAATAG,-,0.00),-23(CTTTAAATAGTG,+,0.00)
mm_93075.1	chr10	89434554	89434754	-	1	NA	NA	NA	9313	NM_001284344	237436	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0.035000	0.547264	
mm_119705.1	chr14	53800705	53800905	+	1	NA	NA	NA	453124	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.457711	
mm_33164.1	chr4	126023326	126023526	+	1	NA	NA	NA	-1233	NR_045561	12986	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.015000	0.542289	
mm_19711.1	chr2	103819568	103819768	-	1	NA	NA	NA	-9046	NR_040514	78031	Mm.243867	NR_040514	ENSMUSG00000086687	4930547E08Rik	-	RIKEN cDNA 4930547E08 gene	ncRNA	0.040000	0.542289	
mm_127954.1	chr15	11399487	11399687	-	1	NA	NA	NA	71	NM_033074	110960	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	0.075000	0.626866	
mm_147630.1	chr18	58210348	58210548	-	1	NA	NA	NA	-522	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.155000	0.825871	-33(CCTCTAAAACCC,+,0.00)
mm_171808.1	chr5	129887236	129887436	-	1	NA	NA	NA	134	NM_024166	14004	Mm.30133	NM_024166	ENSMUSG00000070493	Chchd2	AL033347|Etohi6	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding	0.060000	0.517413	
mm_12588.1	chr2	73560979	73561179	+	1	NA	NA	NA	19259	NM_007389	11435	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	0.050000	0.572139	
mm_103582.1	chr11	78176871	78177071	-	1	NA	NA	NA	-305	NM_080849	140859	Mm.23788	NM_080849	ENSMUSG00000017405	Nek8	4632401F23Rik|b2b1449Clo|jck	NIMA (never in mitosis gene a)-related expressed kinase 8	protein-coding	0.050000	0.477612	
mm_100177.1	chr11	116533946	116534146	+	1	NA	NA	NA	-694	NM_011451	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.075000	0.681592	
mm_41102.1	chr5	87694863	87695063	+	1	NA	NA	NA	4462	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.015000	0.482587	
mm_127262.1	chr15	99710664	99710864	+	1	NA	NA	NA	-6829	NM_010271	14555	Mm.252391	NM_010271	ENSMUSG00000023019	Gpd1	AI747587|Gdc-1|Gdc1|mKIAA4010	glycerol-3-phosphate dehydrogenase 1 (soluble)	protein-coding	0.005000	0.497512	
mm_73832.1	chr8	117460523	117460723	+	1	NA	NA	NA	1358	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.025000	0.606965	
mm_162428.1	chr1	93445706	93445906	+	1	NA	NA	NA	-105	NM_001301364	110611	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0.060000	0.606965	
mm_22376.1	chr2	181156144	181156344	-	1	NA	NA	NA	771	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.030000	0.597015	
mm_19008.1	chr2	76891374	76891574	-	1	NA	NA	NA	91073	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.020000	0.477612	58(CCTTAAAAATCC,+,0.00)
mm_110160.1	chr12	26473987	26474187	-	1	NA	NA	NA	4872	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.020000	0.442786	
mm_63008.1	chr7	120917692	120917892	+	1	NA	NA	NA	48	NM_001164096	26939	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0.145000	0.756219	
mm_137889.1	chr17	31679547	31679747	+	1	NA	NA	NA	1716	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.030000	0.547264	
mm_66307.1	chr7	39264369	39264569	-	1	NA	NA	NA	148691	NM_177890	330513	Mm.67238	NM_177890	ENSMUSG00000053742	Gm5114	4921507A12|EG330513	predicted gene 5114	protein-coding	0.000000	0.452736	
mm_82099.1	chr9	123061541	123061741	+	1	NA	NA	NA	26900	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.015000	0.507463	
mm_62097.1	chr7	96210092	96210292	+	1	NA	NA	NA	-445	NM_011858	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.105000	0.746269	
mm_172453.1	chr7	3483627	3483827	+	1	NA	NA	NA	18825	NM_177363	245126	Mm.245747	NM_177363	ENSMUSG00000053338	Tarm1	9930022N03Rik|ENSMUSG00000053338|Gm9904|OLT-2	T cell-interacting, activating receptor on myeloid cells 1	protein-coding	0.010000	0.537313	-19(CCCCTTATAAAC,-,0.00),-17(CCTTATAAACAT,+,0.00)
mm_132548.1	chr16	37883285	37883485	+	1	NA	NA	NA	14985	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.010000	0.487562	
mm_153746.1	chr19	44750705	44750905	-	1	NA	NA	NA	-6589	NM_011037	18504	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0.035000	0.611940	
mm_165748.1	chr3	107852744	107852944	-	1	NA	NA	NA	-24386	NM_133867	99662	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0.015000	0.567164	
mm_42097.1	chr5	110344605	110344805	+	1	NA	NA	NA	-25	NR_132326	381667	Mm.332572	NM_001033459	ENSMUSG00000072754	Lrcol1	Clpsl3|Gm1679	leucine rich colipase-like 1	protein-coding	0.020000	0.537313	
mm_5325.1	chr1	23102155	23102355	-	1	NA	NA	NA	-2	NM_025746	66755	Mm.431297	NM_025746	ENSMUSG00000073730	4933415F23Rik	-	RIKEN cDNA 4933415F23 gene	protein-coding	0.050000	0.711443	
mm_111477.1	chr12	98683636	98683836	-	1	NA	NA	NA	50909	NM_011877	24000	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0.025000	0.497512	
mm_109167.1	chr12	108306291	108306491	+	1	NA	NA	NA	121	NM_001044380	214305	Mm.36423	NM_001044380	ENSMUSG00000021260	Hhipl1	1600002O04Rik|AK129450|mKIAA1822	hedgehog interacting protein-like 1	protein-coding	0.100000	0.746269	
mm_150120.1	chr19	29951672	29951872	+	1	NA	NA	NA	5982	NM_001164724	77125	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	0.010000	0.417910	
mm_9101.1	chr1	169974896	169975096	-	1	NA	NA	NA	5587	NR_040438	67303	Mm.396611	NR_040438	ENSMUSG00000097503	3110045C21Rik	AI838577	RIKEN cDNA 3110045C21 gene	ncRNA	0.005000	0.407960	
mm_73762.1	chr8	115251376	115251576	+	1	NA	NA	NA	455418	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.015000	0.373134	
mm_146559.1	chr18	6241089	6241289	-	1	NA	NA	NA	335	NM_008448	16573	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.115000	0.706468	
mm_78079.1	chr9	15729256	15729456	+	1	NA	NA	NA	19587	NM_172289	234967	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.000000	0.402985	
mm_41183.1	chr5	88318469	88318669	+	1	NA	NA	NA	1257	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.005000	0.353234	
mm_53076.1	chr6	124935282	124935482	+	1	NA	NA	NA	3994	NM_001170341	30853	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.045000	0.616915	
mm_138602.1	chr17	35556238	35556438	+	1	NA	NA	NA	4210	NM_001008424	386463	Mm.426664	NM_001008424	ENSMUSG00000039518	Cdsn	AI747712	corneodesmosin	protein-coding	0.030000	0.547264	
mm_10575.1	chr2	18064704	18064904	+	1	NA	NA	NA	219	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.110000	0.731343	
mm_131052.1	chr16	4037044	4037244	+	1	NA	NA	NA	-1	NM_010061	13419	Mm.291048	NM_010061	ENSMUSG00000005980	Dnase1	AI788650|DNaseI|Dnl1	deoxyribonuclease I	protein-coding	0.010000	0.462687	-33(CCTTTAAAACTG,+,0.00)
mm_172400.1	chr7	142306218	142306418	-	1	NA	NA	NA	2816	NM_015809	50775	Mm.389990	NM_015809	ENSMUSG00000045236	Krtap5-4	-	keratin associated protein 5-4	protein-coding	0.025000	0.527363	-20(ACCTTTTAAAAG,-,0.00),-19(CCTTTTAAAAGT,+,0.00),-18(CTTTTAAAAGTA,+,0.00)
mm_66068.1	chr7	30823728	30823928	-	1	NA	NA	NA	-53	NM_146187	233079	Mm.97338	NM_146187	ENSMUSG00000051314	Ffar2	GPCR43|Gpr43	free fatty acid receptor 2	protein-coding	0.040000	0.557214	
mm_76644.1	chr8	93079870	93080070	-	1	NA	NA	NA	47	NM_001081372	382044	Mm.482549	NM_001081372	ENSMUSG00000078964	Ces1b	Gm5158	carboxylesterase 1B	protein-coding	0.000000	0.502488	
mm_72607.1	chr8	84533326	84533526	+	1	NA	NA	NA	118062	NM_001252061	12286	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.015000	0.527363	
mm_149146.1	chr19	9005819	9006019	+	1	NA	NA	NA	-11985	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.005000	0.462687	
mm_30904.1	chr4	32363849	32364049	+	1	NA	NA	NA	-53486	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.035000	0.587065	
mm_87666.1	chr10	58609020	58609220	+	1	NA	NA	NA	66576	NM_010100	13608	Mm.174523	NM_010100	ENSMUSG00000003227	Edar	ED1R|ED3|ED5|EDA-A1R|EDA3|dl	ectodysplasin-A receptor	protein-coding	0.010000	0.507463	56(TTGTCTATAAGG,-,0.00)
mm_98162.1	chr11	87737448	87737648	+	1	NA	NA	NA	-17	NM_009296	20922	Mm.622	NM_009296	ENSMUSG00000020485	Supt4a	AL022777|Supt4h|Supt4h1|Supt4h1a	suppressor of Ty 4A	protein-coding	0.080000	0.631841	
mm_121489.1	chr14	121239643	121239843	+	1	NA	NA	NA	139487	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.020000	0.442786	
mm_138196.1	chr17	34287922	34288122	+	1	NA	NA	NA	-251	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.010000	0.497512	
mm_149607.1	chr19	16384196	16384396	+	1	NA	NA	NA	-51371	NM_008137	14675	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.025000	0.547264	17(CCCTTTAAACCA,+,0.00)
mm_65386.1	chr7	25091213	25091413	-	1	NA	NA	NA	5862	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.020000	0.552239	
mm_77057.1	chr8	109608292	109608492	-	1	NA	NA	NA	281	NM_020046	56749	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	0.055000	0.621891	
mm_58746.1	chr7	13278726	13278926	+	1	NA	NA	NA	0	NM_010715	16881	Mm.288179	NM_010715	ENSMUSG00000056394	Lig1	AL033288|LigI	ligase I, DNA, ATP-dependent	protein-coding	0.115000	0.636816	-98(CCATTTCTAGGC,+,0.00)
mm_163779.1	chr13	120044218	120044418	-	1	NA	NA	NA	7886	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.005000	0.333333	
mm_172515.1	chr7	78847066	78847266	-	1	NA	NA	NA	45	NM_029585	76375	Mm.250541	NM_029585	ENSMUSG00000030610	Det1	2610034H20Rik	de-etiolated homolog 1 (Arabidopsis)	protein-coding	0.115000	0.746269	
mm_109713.1	chr12	114322931	114323131	+	1	NA	NA	NA	146435	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.000000	0.388060	87(TGATTTTAAAGG,-,0.00),88(GATTTTAAAGGC,+,0.00)
mm_169324.1	chr14	115280198	115280398	-	1	NA	NA	NA	129254	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0.015000	0.437811	
mm_144621.1	chr18	32934859	32935059	+	1	NA	NA	NA	-4082	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.020000	0.482587	
mm_158619.1	chrX	152657406	152657606	-	1	NA	NA	NA	-12958	NM_001290685	110380	Mm.40796	NM_172441	ENSMUSG00000045180	Shroom2	4832440C16|Apxl|C630003H05Rik|Shrm2	shroom family member 2	protein-coding	0.005000	0.467662	
mm_69473.1	chr7	133730732	133730932	-	1	NA	NA	NA	21499	NM_025392	66165	Mm.389983	NM_025392	ENSMUSG00000030983	Bccip	1110013J05Rik|TOK-1	BRCA2 and CDKN1A interacting protein	protein-coding	0.030000	0.537313	
mm_124711.1	chr15	6569437	6569637	+	1	NA	NA	NA	-10310	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.015000	0.502488	
mm_31996.1	chr4	89818602	89818802	+	1	NA	NA	NA	130504	NM_175647	242523	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	0.000000	0.457711	
mm_46100.1	chr5	92347281	92347481	-	1	NA	NA	NA	1508	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.020000	0.532338	-6(AGGTCTAAAAGG,-,0.00)
mm_26872.1	chr3	17327816	17328016	-	1	NA	NA	NA	-462005	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.005000	0.452736	
mm_10752.1	chr2	23196357	23196557	+	1	NA	NA	NA	-11019	NM_027635	70981	Mm.314026	NM_027635	ENSMUSG00000026774	4931423N10Rik	-	RIKEN cDNA 4931423N10 gene	protein-coding	0.000000	0.318408	
mm_31684.1	chr4	62298038	62298238	+	1	NA	NA	NA	6591	NM_001290518	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.005000	0.442786	
mm_87041.1	chr10	28744379	28744579	+	1	NA	NA	NA	76119	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.010000	0.537313	
mm_169741.1	chr15	85679339	85679539	+	1	NA	NA	NA	-24334	NR_110483	102800312	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0.040000	0.621891	
mm_162749.1	chr10	58446602	58446802	-	1	NA	NA	NA	-150	NM_011240	19386	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0.080000	0.532338	
mm_147597.1	chr18	56708214	56708414	-	1	NA	NA	NA	501	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.140000	0.696517	
mm_56740.1	chr6	115808645	115808845	-	1	NA	NA	NA	-2	NM_172086	19951	Mm.104368	NM_172086	ENSMUSG00000057841	Rpl32	AU020185|rpL32-3A	ribosomal protein L32	protein-coding	0.100000	0.616915	
mm_71522.1	chr8	46851808	46852008	+	1	NA	NA	NA	112163	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.010000	0.393035	
mm_101424.1	chr11	29547812	29548012	-	1	NA	NA	NA	-38	NM_028504	73324	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	0.120000	0.631841	
mm_37447.1	chr4	123379871	123380071	-	1	NA	NA	NA	31940	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.000000	0.288557	
mm_27697.1	chr3	66973704	66973904	-	1	NA	NA	NA	5007	NM_001302358	20429	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0.130000	0.736318	
mm_71698.1	chr8	61687270	61687470	+	1	NA	NA	NA	72728	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.015000	0.507463	
mm_147329.1	chr18	42579699	42579899	-	1	NA	NA	NA	-147	NM_181543	240239	Mm.186779	NM_181543	ENSMUSG00000042816	Gpr151	C130082O03Rik|GalRL|PGR7|nGPCR-2037	G protein-coupled receptor 151	protein-coding	0.005000	0.457711	
mm_135213.1	chr16	36642648	36642848	-	1	NA	NA	NA	23329	NM_019388	12524	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.015000	0.477612	
mm_31500.1	chr4	53340023	53340223	+	1	NA	NA	NA	-69891	NR_033139	381524	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659	expressed sequence AI427809	ncRNA	0.010000	0.557214	
mm_75415.1	chr8	46551635	46551835	-	1	NA	NA	NA	-334	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.065000	0.572139	
mm_126733.1	chr15	85653477	85653677	+	1	NA	NA	NA	-50196	NR_110483	102800312	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0.070000	0.731343	
mm_11580.1	chr2	32961608	32961808	+	1	NA	NA	NA	-4	NM_009076	269261	Mm.250030	NM_009076	ENSMUSG00000038900	Rpl12	E430018F03	ribosomal protein L12	protein-coding	0.105000	0.636816	
mm_119427.1	chr14	45391583	45391783	+	1	NA	NA	NA	-2887	NM_019425	54342	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding	0.045000	0.462687	-37(CTGCATAAAAAG,-,0.00)
mm_54724.1	chr6	40519380	40519580	-	1	NA	NA	NA	28	NM_026317	67690	Mm.52550	NM_026317	ENSMUSG00000029909	Prss37	1700016G05Rik|Tryx2	protease, serine 37	protein-coding	0.000000	0.497512	
mm_101490.1	chr11	31671730	31671930	-	1	NA	NA	NA	32	NM_001024919	69556	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.140000	0.741294	
mm_110469.1	chr12	51829476	51829676	-	1	NA	NA	NA	-40	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.180000	0.835821	
mm_112239.1	chr12	113482327	113482527	-	1	NA	NA	NA	-7138	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.507463	
mm_34853.1	chr4	155510424	155510624	+	1	NA	NA	NA	19163	NM_001160016	14688	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.000000	0.323383	-33(CCTTTTATGACT,+,0.00)
mm_81078.1	chr9	106223722	106223922	+	1	NA	NA	NA	1224	NM_031178	81897	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	0.020000	0.542289	
mm_122725.1	chr14	52316062	52316262	-	1	NA	NA	NA	161	NM_001244916	50524	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding	0.090000	0.711443	
mm_108843.1	chr12	98259485	98259685	+	1	NA	NA	NA	-126	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.035000	0.507463	
mm_380.1	chr1	34022663	34022863	+	1	NA	NA	NA	10938	NM_134448	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.005000	0.437811	
mm_49.1	chr1	6527736	6527936	+	1	NA	NA	NA	40605	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.343284	
mm_81182.1	chr9	107399954	107400154	+	1	NA	NA	NA	174	NM_020263	56808	Mm.273084	NM_020263	ENSMUSG00000010066	Cacna2d2	Cacna2d|a2d2|du|mKIAA0558|td|torpid	calcium channel, voltage-dependent, alpha 2/delta subunit 2	protein-coding	0.140000	0.781095	
mm_103418.1	chr11	75533000	75533200	-	1	NA	NA	NA	988	NM_001199283	215113	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.025000	0.487562	
mm_156424.1	chrX	140953747	140953947	+	1	NA	NA	NA	2864	NM_016883	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	0.010000	0.452736	
mm_168525.1	chr11	6006166	6006366	+	1	NA	NA	NA	50508	NM_019661	56418	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0.070000	0.547264	-34(CCCTATAAAAAG,-,0.00)
mm_4399.1	chr1	172376464	172376664	+	1	NA	NA	NA	33	NM_026234	67556	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	0.100000	0.681592	
mm_162007.1	chr19	40994626	40994826	-	1	NA	NA	NA	-191	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.010000	0.447761	
mm_88886.1	chr10	81136145	81136345	+	1	NA	NA	NA	-26	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.095000	0.766169	
mm_117852.1	chr13	98725618	98725818	-	1	NA	NA	NA	-30887	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.020000	0.393035	
mm_54015.1	chr6	8364216	8364416	-	1	NA	NA	NA	105028	NM_001302353	100036521	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039|OTTMUSG00000029336	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0.025000	0.507463	-59(CCCTTAAGGGAC,+,0.00)
mm_151725.1	chr19	4863941	4864141	-	1	NA	NA	NA	8912	NM_019861	56464	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	0.055000	0.557214	
mm_143381.1	chr17	67955614	67955814	-	1	NA	NA	NA	-4774	NM_001347410	268970	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0.010000	0.462687	
mm_23099.1	chr3	37281410	37281610	+	1	NA	NA	NA	30936	NM_145825	207175	Mm.344708	NM_145825	ENSMUSG00000045031	Cetn4	-	centrin 4	protein-coding	0.010000	0.388060	
mm_34951.1	chr4	155962267	155962467	+	1	NA	NA	NA	55	NM_026125	67389	Mm.29140	NM_026125	ENSMUSG00000023571	Fam132a	1110035L05Rik|C1qdc2|CTRP12|alipolin	family with sequence similarity 132, member A	protein-coding	0.050000	0.646766	
mm_3728.1	chr1	155059845	155060045	+	1	NA	NA	NA	39691	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.030000	0.512438	-23(GCCCCTAAAGGA,-,0.00)
mm_150374.1	chr19	34922314	34922514	+	1	NA	NA	NA	56	NM_183046	240641	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|B130024C23|C330014J10Rik|Mphosph1|magoo	kinesin family member 20B	protein-coding	0.085000	0.636816	
mm_154153.1	chr19	58455337	58455537	-	1	NA	NA	NA	-39	NM_010279	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.040000	0.557214	
mm_88071.1	chr10	67909132	67909332	+	1	NA	NA	NA	3430	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0.035000	0.567164	
mm_58434.1	chr7	3297595	3297795	+	1	NA	NA	NA	4667	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.015000	0.517413	
mm_97573.1	chr11	78940155	78940355	+	1	NA	NA	NA	14964	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.577114	
mm_33792.1	chr4	134924113	134924313	+	1	NA	NA	NA	588	NM_023665	27981	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.160000	0.716418	
mm_160163.1	chr7	44552629	44552829	-	1	NA	NA	NA	1236	NM_009473	22260	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0.020000	0.557214	
mm_108937.1	chr12	101975885	101976085	+	1	NA	NA	NA	11	NM_016856	51786	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.095000	0.671642	
mm_21987.1	chr2	167590422	167590622	-	1	NA	NA	NA	41483	NM_001311146	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.015000	0.587065	
mm_60529.1	chr7	44480104	44480304	+	1	NA	NA	NA	-4313	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.462687	
mm_126298.1	chr15	79348327	79348527	+	1	NA	NA	NA	25	NM_001304832	17133	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.025000	0.567164	
mm_14137.1	chr2	126152039	126152239	+	1	NA	NA	NA	-2	NM_026981	69185	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	0.110000	0.711443	
mm_26726.1	chr3	159927779	159927979	+	1	NA	NA	NA	88184	NM_026582	68151	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|Gpr177	wntless homolog (Drosophila)	protein-coding	0.000000	0.333333	
mm_49398.1	chr6	28424481	28424681	+	1	NA	NA	NA	941	NM_007480	11844	Mm.389075	NM_007480	ENSMUSG00000020440	Arf5	-	ADP-ribosylation factor 5	protein-coding	0.025000	0.502488	
mm_147694.1	chr18	60748551	60748751	-	1	NA	NA	NA	-25945	NM_020600	20044	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.155000	0.781095	
mm_14720.1	chr2	143938467	143938667	+	1	NA	NA	NA	23236	NM_019771	56431	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.025000	0.442786	
mm_45138.1	chr5	48935374	48935574	-	1	NA	NA	NA	-45917	NM_030265	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.010000	0.263682	
mm_10197.1	chr2	4927391	4927591	+	1	NA	NA	NA	8495	NM_010726	16922	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.015000	0.487562	
mm_129554.1	chr15	79442017	79442217	-	1	NA	NA	NA	-60	NM_013767	27373	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.175000	0.805970	-68(CCCTTTAAATCC,+,0.00)
mm_27019.1	chr3	26045943	26046143	-	1	NA	NA	NA	107264	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.417910	
mm_102186.1	chr11	54248411	54248611	-	1	NA	NA	NA	1388	NM_009969	12981	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	0.025000	0.527363	
mm_113830.1	chr13	47066356	47066556	+	1	NA	NA	NA	22957	NM_172262	218214	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	0.010000	0.542289	-73(CTCCATTTAAGG,-,0.00)
mm_26433.1	chr3	142620512	142620712	+	1	NA	NA	NA	-51	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.010000	0.487562	
mm_53898.1	chr6	3487295	3487495	-	1	NA	NA	NA	7103	NM_178899	101202	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0.010000	0.442786	
mm_57027.1	chr6	122282816	122283016	-	1	NA	NA	NA	-83	NM_016970	50928	Mm.20434	NM_016970	ENSMUSG00000030114	Klrg1	2F1-Ag|MAFA|MAFA-L	killer cell lectin-like receptor subfamily G, member 1	protein-coding	0.010000	0.457711	
mm_100296.1	chr11	117829400	117829600	+	1	NA	NA	NA	-3486	NM_009387	21877	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.015000	0.547264	
mm_113670.1	chr13	42717338	42717538	+	1	NA	NA	NA	7857	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.010000	0.437811	
mm_144359.1	chr18	20221533	20221733	+	1	NA	NA	NA	-25707	NM_181680	211924	Mm.391118	NM_181680	ENSMUSG00000034774	Dsg1c	Dsg1gamma|Dsg6|dsg1g	desmoglein 1 gamma	protein-coding	0.005000	0.487562	
mm_89227.1	chr10	87521805	87522005	+	1	NA	NA	NA	110	NM_008777	18478	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0.010000	0.517413	
mm_46825.1	chr5	113211854	113212054	-	1	NA	NA	NA	-14955	NM_001033428	333048	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	0.005000	0.507463	
mm_157854.1	chrX	74494873	74495073	-	1	NA	NA	NA	-13574	NM_001099305	628456	Mm.455664	NM_001099305	ENSMUSG00000079536	Gm6880	EG628456	predicted gene 6880	protein-coding	0.050000	0.522388	
mm_27359.1	chr3	50419043	50419243	-	1	NA	NA	NA	24470	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.373134	
mm_35844.1	chr4	48279479	48279679	-	1	NA	NA	NA	10	NM_029572	76299	Mm.317701	NM_029572	ENSMUSG00000028343	Erp44	1110001E24Rik|AI849526|AL033348|Txndc4	endoplasmic reticulum protein 44	protein-coding	0.080000	0.631841	74(CCTTTTCTAGCC,+,0.00)
mm_121222.1	chr14	103055246	103055446	+	1	NA	NA	NA	8334	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.492537	
mm_42005.1	chr5	107941400	107941600	+	1	NA	NA	NA	40972	NM_016980	100503670	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	0.020000	0.447761	
mm_70860.1	chr8	24479985	24480185	+	1	NA	NA	NA	4901	NR_035483	100316707		NR_035483	ENSMUSG00000088552	Mir1957a	Mir1957|mmu-mir-1957|mmu-mir-1957a	microRNA 1957a	ncRNA	0.000000	0.552239	
mm_106948.1	chr12	8771315	8771515	+	1	NA	NA	NA	19	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.070000	0.636816	
mm_22251.1	chr2	174853148	174853348	-	1	NA	NA	NA	92629	NM_007903	13616	Mm.9478	NM_007903	ENSMUSG00000027524	Edn3	ET-3|PPET3|ls|tmgc48	endothelin 3	protein-coding	0.020000	0.477612	
mm_144234.1	chr18	10617707	10617907	+	1	NA	NA	NA	11	NM_009226	20641	Mm.603	NM_009226	ENSMUSG00000002477	Snrpd1	AA407109|AL023031|SMD1	small nuclear ribonucleoprotein D1	protein-coding	0.115000	0.661692	
mm_153702.1	chr19	44397656	44397856	-	1	NA	NA	NA	9953	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.015000	0.313433	
mm_119936.1	chr14	54975885	54976085	+	1	NA	NA	NA	-209	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.030000	0.587065	
mm_146968.1	chr18	33463362	33463562	-	1	NA	NA	NA	172	NM_001267717	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.015000	0.542289	
mm_10407.1	chr2	13578672	13578872	+	1	NA	NA	NA	4461	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.030000	0.517413	
mm_82854.1	chr9	31434657	31434857	-	1	NA	NA	NA	29481	NM_144936	235135	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	0.020000	0.368159	-38(CCTTATAAATCT,+,0.00)
mm_45163.1	chr5	50058859	50059059	-	1	NA	NA	NA	37	NM_133911	70693	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding	0.175000	0.805970	
mm_127212.1	chr15	99249151	99249351	+	1	NA	NA	NA	-2537	NR_045627	73600	Mm.475134	NR_045627	ENSMUSG00000100599	1700120C14Rik	-	RIKEN cDNA 1700120C14 gene	ncRNA	0.030000	0.616915	
mm_33674.1	chr4	133220782	133220982	+	1	NA	NA	NA	73	NM_027152	69655	Mm.285685	NM_027152	ENSMUSG00000028865	Cd164l2	2310047N01Rik	CD164 sialomucin-like 2	protein-coding	0.080000	0.686567	
mm_73956.1	chr8	120369065	120369265	+	1	NA	NA	NA	-119701	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.020000	0.587065	
mm_141115.1	chr17	26089983	26090183	-	1	NA	NA	NA	81	NM_011933	26378	Mm.292869	NM_011933	ENSMUSG00000036775	Decr2	-	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	protein-coding	0.060000	0.582090	
mm_110585.1	chr12	56529324	56529524	-	1	NA	NA	NA	-4	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.040000	0.616915	
mm_96614.1	chr11	69098826	69099026	+	1	NA	NA	NA	-30	NM_011065	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.070000	0.661692	
mm_2831.1	chr1	131245229	131245429	+	1	NA	NA	NA	-151	NM_001313731	54354	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.120000	0.716418	
mm_169831.1	chr1	62534081	62534281	-	1	NA	NA	NA	-169136	NM_001077406	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.035000	0.472637	-98(CTCCTTAAGAGG,-,0.00)
mm_148699.1	chr19	5741983	5742183	+	1	NA	NA	NA	1179	NM_008520	16998	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0.070000	0.671642	
mm_158336.1	chrX	133981689	133981889	-	1	NA	NA	NA	23	NM_001290718	27359	Mm.38674	NM_013757	ENSMUSG00000031255	Sytl4	Gph|Slp4	synaptotagmin-like 4	protein-coding	0.040000	0.587065	-82(GCTCAAATAGCC,+,0.00),-56(GCCCCTTTAAGA,-,0.00),-53(CCTTTAAGAGTC,+,0.00)
mm_5878.1	chr1	53824898	53825098	-	1	NA	NA	NA	-24426	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.015000	0.432836	
mm_145588.1	chr18	60985789	60985989	+	1	NA	NA	NA	22335	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.005000	0.517413	
mm_75655.1	chr8	65129463	65129663	-	1	NA	NA	NA	-26	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA	0.025000	0.422886	
mm_64489.1	chr7	143107142	143107342	+	1	NA	NA	NA	-12	NM_008434	16535	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0.105000	0.781095	
mm_123747.1	chr14	70192588	70192788	-	1	NA	NA	NA	-442	NM_001271409	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.025000	0.601990	
mm_140985.1	chr17	24724239	24724439	-	1	NA	NA	NA	49	NM_026684	68342	Mm.1129	NM_026684	ENSMUSG00000040048	Ndufb10	0610011B04Rik|22kDa|PDSW	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 10	protein-coding	0.085000	0.641791	
mm_121992.1	chr14	26463521	26463721	-	1	NA	NA	NA	71003	NM_032008	83997	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0.015000	0.383085	68(GTTTTTAAAGAT,+,0.00)
mm_119784.1	chr14	54181532	54181732	+	1	NA	NA	NA	72297	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.432836	
mm_41763.1	chr5	103425089	103425289	+	1	NA	NA	NA	-3	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.135000	0.746269	
mm_150463.1	chr19	38348637	38348837	+	1	NA	NA	NA	-47243	NM_175507	240660	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	0.005000	0.407960	
mm_117646.1	chr13	92706437	92706637	-	1	NA	NA	NA	88281	NM_011582	21828	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	0.015000	0.512438	
mm_33933.1	chr4	136890239	136890439	+	1	NA	NA	NA	2575	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.045000	0.567164	
mm_53875.1	chr6	149531828	149532028	+	1	NA	NA	NA	122944	NM_009753	12121	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	bicaudal D homolog 1 (Drosophila)	protein-coding	0.005000	0.368159	
mm_120003.1	chr14	55643547	55643747	+	1	NA	NA	NA	159	NM_028780	74140	Mm.132857	NM_028780	ENSMUSG00000002320	Tm9sf1	1200014D02Rik|AI893436|MP70	transmembrane 9 superfamily member 1	protein-coding	0.115000	0.686567	
mm_82318.1	chr9	7984018	7984218	-	1	NA	NA	NA	20478	NM_001171147	22601	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	0.000000	0.378109	-69(TTGTTTAAAAGA,-,0.00)
mm_154581.1	chrX	7572545	7572745	+	1	NA	NA	NA	-955	NR_029473	78185	Mm.160055	NR_029473	ENSMUSG00000039545	Ppp1r3fos	4930524L23Rik	protein phosphatase 1, regulatory subunit 3F, opposite strand	ncRNA	0.025000	0.537313	
mm_79382.1	chr9	54768346	54768546	+	1	NA	NA	NA	3698	NM_013496	12903	Mm.34797	NM_013496	ENSMUSG00000032291	Crabp1	AI326249|CRABP-I|Crabp-1|CrabpI|Rbp-5	cellular retinoic acid binding protein I	protein-coding	0.025000	0.517413	
mm_57097.1	chr6	122590345	122590545	-	1	NA	NA	NA	11999	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.005000	0.517413	
mm_159008.1	chr1	163929040	163929240	+	1	NA	NA	NA	40	NM_001286002	240880	Mm.389213	NM_028776	ENSMUSG00000026584	Scyl3	1200016D23Rik|6030457O16|AW214499|Pace1	SCY1-like 3 (S. cerevisiae)	protein-coding	0.015000	0.462687	
mm_90584.1	chr10	128269084	128269284	+	1	NA	NA	NA	1187	NM_133997	103161	Mm.26513	NM_133997	ENSMUSG00000047631	Apof	AI255964	apolipoprotein F	protein-coding	0.015000	0.582090	
mm_107434.1	chr12	35992809	35993009	+	1	NA	NA	NA	-16	NM_011783	23795	Mm.7244	NM_011783	ENSMUSG00000020581	Agr2	Agr2h|Gob-4|HAG-2|XAG-2|mAG-2	anterior gradient 2	protein-coding	0.020000	0.527363	-34(GCCCATAAATAC,-,0.00)
mm_129360.1	chr15	77956359	77956559	-	1	NA	NA	NA	263	NM_001168260	239554	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	0.020000	0.606965	
mm_74460.1	chr8	4214684	4214884	-	1	NA	NA	NA	2528	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.050000	0.611940	
mm_83873.1	chr9	55043909	55044109	-	1	NA	NA	NA	4535	NM_148944	108015	Mm.32694	NM_148944	ENSMUSG00000035200	Chrnb4	Acrb-4|Acrb4	cholinergic receptor, nicotinic, beta polypeptide 4	protein-coding	0.020000	0.651741	
mm_92443.1	chr10	77530081	77530281	-	1	NA	NA	NA	-167	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.030000	0.552239	
mm_156750.1	chrX	160390383	160390583	+	1	NA	NA	NA	-207	NM_001079847	237175	Mm.213016	NM_178712	ENSMUSG00000031298	Adgrg2	AW212196|B830041D06Rik|Gpr64|Me6	adhesion G protein-coupled receptor G2	protein-coding	0.060000	0.691542	
mm_10976.1	chr2	25765433	25765633	+	1	NA	NA	NA	-36	NM_010694	16820	Mm.4632	NM_010694	ENSMUSG00000026936	Lcn3	Vnsp1	lipocalin 3	protein-coding	0.000000	0.522388	-32(CTGTATAAAGAG,-,0.00)
mm_70633.1	chr8	13785541	13785741	+	1	NA	NA	NA	26	NM_025924	67031	Mm.44858	NM_025924	ENSMUSG00000038398	Upf3a	2600001C03Rik|4930546M19Rik|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding	0.110000	0.736318	
mm_55662.1	chr6	72394495	72394695	-	1	NA	NA	NA	-3928	NM_016794	22320	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.010000	0.487562	
mm_2365.1	chr1	93135218	93135418	+	1	NA	NA	NA	78	NM_001276710	11611	Mm.7457	NM_016702	ENSMUSG00000026272	Agxt	AGT|Agt1|Agxt1|SPT	alanine-glyoxylate aminotransferase	protein-coding	0.035000	0.601990	
mm_150076.1	chr19	29386802	29387002	+	1	NA	NA	NA	19464	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.358209	
mm_79541.1	chr9	57910899	57911099	+	1	NA	NA	NA	13	NM_001122873	69459	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0.085000	0.651741	-76(CCATTTATAAGG,+,0.00),-76(CCATTTATAAGG,-,0.00)
mm_157318.1	chrX	21221560	21221760	-	1	NA	NA	NA	5	NM_001252013	100503481	Mm.272069	NM_001252013		4930453H23Rik	-	RIKEN cDNA 4930453H23 gene	protein-coding	0.000000	0.492537	
mm_106406.1	chr11	118909947	118910147	-	1	NA	NA	NA	-475	NM_001039167	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.045000	0.601990	
mm_120769.1	chr14	73524880	73525080	+	1	NA	NA	NA	14931	NM_026119	67381	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0.095000	0.641791	
mm_13377.1	chr2	103761381	103761581	+	1	NA	NA	NA	-231	NM_153126	98956	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.035000	0.417910	
mm_35541.1	chr4	41422521	41422721	-	1	NA	NA	NA	42227	NM_024241	109242	Mm.370288	NM_024241	ENSMUSG00000028438	Kif24	4933425J19Rik|9430029L23Rik	kinesin family member 24	protein-coding	0.005000	0.402985	
mm_39964.1	chr5	32136943	32137143	+	1	NA	NA	NA	571	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.020000	0.393035	
mm_84836.1	chr9	78355660	78355860	-	1	NA	NA	NA	-8615	NM_008182	14858	Mm.422778	NM_008182	ENSMUSG00000057933	Gsta2	Gst2-2|Gstc-2|Gstc2	glutathione S-transferase, alpha 2 (Yc2)	protein-coding	0.030000	0.527363	
mm_1504.1	chr1	72284293	72284493	+	1	NA	NA	NA	20	NM_175564	271711	Mm.80318	NM_175564	ENSMUSG00000026188	Tmem169	A830020B06Rik	transmembrane protein 169	protein-coding	0.090000	0.691542	
mm_62133.1	chr7	97081645	97081845	+	1	NA	NA	NA	-6	NM_001162477	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.175000	0.810945	
mm_95637.1	chr11	53707657	53707857	+	1	NA	NA	NA	-438	NM_009012	19360	Mm.4888	NM_009012	ENSMUSG00000020380	Rad50	Mrell|Rad50l	RAD50 double strand break repair protein	protein-coding	0.020000	0.313433	
mm_74285.1	chr8	125729916	125730116	+	1	NA	NA	NA	-4187	NM_025636	66566	Mm.25296	NM_025636	ENSMUSG00000031851	Ntpcr	2310079N02Rik|AI449709	nucleoside-triphosphatase, cancer-related	protein-coding	0.020000	0.522388	
mm_104165.1	chr11	87358946	87359146	-	1	NA	NA	NA	-52	NM_177167	320472	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	0.125000	0.756219	
mm_25659.1	chr3	121723425	121723625	+	1	NA	NA	NA	-12	NM_010171	14066	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0.130000	0.746269	52(CCCTTTATAACG,+,0.00)
mm_153942.1	chr19	47507783	47507983	-	1	NA	NA	NA	-5099	NR_045322	100503104	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0.025000	0.462687	
mm_8827.1	chr1	162548415	162548615	-	1	NA	NA	NA	-170	NM_144877	71449	Mm.270569	NM_144877	ENSMUSG00000026694	Mettl13	5630401D24Rik	methyltransferase like 13	protein-coding	0.090000	0.651741	
mm_100159.1	chr11	116330383	116330583	+	1	NA	NA	NA	4871	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.010000	0.562189	
mm_172620.1	chr8	20136559	20136759	+	1	NA	NA	NA	160773	NR_030708	547150	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0.015000	0.472637	
mm_87857.1	chr10	61175214	61175414	+	1	NA	NA	NA	52	NM_023064	65971	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.010000	0.412935	44(ATGTATATAAGG,-,0.00)
mm_151579.1	chr19	61176010	61176210	+	1	NA	NA	NA	199	NM_001177513	633057	Mm.426097	NM_001177513	ENSMUSG00000094649	Gm7102	EG633057	predicted gene 7102	protein-coding	0.085000	0.547264	
mm_10167.1	chr2	4431872	4432072	+	1	NA	NA	NA	30996	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.015000	0.427861	35(CCTTTTATGACA,+,0.00)
mm_39911.1	chr5	31297696	31297896	+	1	NA	NA	NA	215	NM_144909	231103	Mm.100043	NM_144909	ENSMUSG00000059434	Gckr	GKRP	glucokinase regulatory protein	protein-coding	0.005000	0.427861	
mm_52292.1	chr6	108666039	108666239	+	1	NA	NA	NA	-5205	NR_104577	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.025000	0.487562	
mm_3956.1	chr1	164115195	164115395	+	1	NA	NA	NA	31	NM_011347	20344	Mm.3337	NM_011347	ENSMUSG00000026580	Selp	CD62P|GMP-140|Grmp|LECAM3|PADGEM	selectin, platelet	protein-coding	0.020000	0.477612	
mm_147794.1	chr18	61652330	61652530	-	1	NA	NA	NA	-3172	NR_029601	387161		NR_029601	ENSMUSG00000065445	Mir143	Mirn143|mir-143|mmu-mir-143	microRNA 143	ncRNA	0.025000	0.577114	-61(TGCCATATAAGG,-,0.00),-59(CCATATAAGGGC,+,0.00)
mm_10248.1	chr2	9187743	9187943	+	1	NA	NA	NA	-1672	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.010000	0.432836	
mm_108911.1	chr12	100206459	100206659	+	1	NA	NA	NA	6415	NM_001313934	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.010000	0.368159	
mm_18158.1	chr2	45095834	45096034	-	1	NA	NA	NA	14343	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.020000	0.417910	
mm_132988.1	chr16	52453277	52453477	+	1	NA	NA	NA	-296	NM_001331110	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.040000	0.562189	
mm_70126.1	chr7	143087114	143087314	-	1	NA	NA	NA	7428	NM_020277	56843	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	0.005000	0.651741	
mm_115756.1	chr13	19192665	19192865	-	1	NA	NA	NA	203048	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.532338	
mm_139770.1	chr17	64716956	64717156	+	1	NA	NA	NA	-50055	NR_105051	101202683	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.005000	0.313433	
mm_73763.1	chr8	115707368	115707568	+	1	NA	NA	NA	-574	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.080000	0.601990	
mm_168788.1	chr12	19118807	19119007	+	1	NA	NA	NA	604397	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.020000	0.542289	66(GTCCCTAAAAAG,-,0.00),68(CCCTAAAAAGTC,+,0.00)
mm_154743.1	chrX	10416551	10416751	+	1	NA	NA	NA	-68465	NM_019634	21912	Mm.18590	NM_019634	ENSMUSG00000058254	Tspan7	1200014P11Rik|A15|AI323365|Cd231|Mxs1|PE31|R74651|TALLA|Tm4sf2	tetraspanin 7	protein-coding	0.040000	0.537313	
mm_136906.1	chr17	13016445	13016645	+	1	NA	NA	NA	8706	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.010000	0.452736	-88(TTTTTTAAAGGT,+,0.00)
mm_73663.1	chr8	111036792	111036992	+	1	NA	NA	NA	3050	NM_146217	234734	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	0.050000	0.422886	
mm_40376.1	chr5	52363868	52364068	+	1	NA	NA	NA	164	NM_011435	20657	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	0.020000	0.616915	
mm_68013.1	chr7	100947525	100947725	-	1	NA	NA	NA	-15464	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.015000	0.492537	
mm_155258.1	chrX	57224055	57224255	+	1	NA	NA	NA	12012	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.010000	0.537313	
mm_113110.1	chr13	24416646	24416846	+	1	NA	NA	NA	1624	NM_001284520	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.025000	0.567164	70(GGCTTTTAAAAG,-,0.00),71(GCTTTTAAAAGA,+,0.00),71(GCTTTTAAAAGA,-,0.00),72(CTTTTAAAAGAG,+,0.00)
mm_1353.1	chr1	66321743	66321943	+	1	NA	NA	NA	119	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.015000	0.487562	
mm_38938.1	chr4	150197258	150197458	-	1	NA	NA	NA	3777	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.025000	0.537313	
mm_106646.1	chr11	121054793	121054993	-	1	NA	NA	NA	8676	NM_026907	58210	Mm.116986	NM_026907	ENSMUSG00000039364	Sectm1b	1810003C24Rik|K12|Sectm1	secreted and transmembrane 1B	protein-coding	0.010000	0.487562	
mm_81528.1	chr9	110062716	110062916	+	1	NA	NA	NA	10795	NM_001311164	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.020000	0.522388	-51(CCTTAAAGGCCG,+,0.00)
mm_77117.1	chr8	111253793	111253993	-	1	NA	NA	NA	5309	NM_009149	20340	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0.005000	0.452736	
mm_62114.1	chr7	96618997	96619197	+	1	NA	NA	NA	182452	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA	0.015000	0.383085	
mm_163006.1	chr11	36052921	36053121	+	1	NA	NA	NA	-72932	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.000000	0.497512	
mm_33076.1	chr4	123904744	123904944	+	1	NA	NA	NA	-169	NM_019660	56309	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	0.095000	0.646766	
mm_171929.1	chr5	61313863	61314063	-	1	NA	NA	NA	-494880	NM_019468	14380	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	0.040000	0.447761	
mm_44318.1	chr5	9485543	9485743	-	1	NA	NA	NA	109939	NR_030537	100124492		NR_030537	ENSMUSG00000077896	Mir879	Mirn879|mir-879|mmu-mir-879	microRNA 879	ncRNA	0.005000	0.353234	
mm_44625.1	chr5	25740433	25740633	-	1	NA	NA	NA	-19440	NM_001310504	242894	Mm.150319	NM_001004365	ENSMUSG00000056367	Actr3b	9630005C02|ARP11|AW047569|Arp3b|Arp3beta	ARP3 actin-related protein 3B	protein-coding	0.015000	0.427861	-47(TTCTTTATAAAC,-,0.00),-45(CTTTATAAACAC,+,0.00)
mm_7637.1	chr1	127896867	127897067	-	1	NA	NA	NA	28194	NM_178690	226407	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0.035000	0.477612	-95(CTCCTTAAGAGG,-,0.00)
mm_84505.1	chr9	67023154	67023354	-	1	NA	NA	NA	20617	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.035000	0.487562	
mm_102112.1	chr11	53269696	53269896	-	1	NA	NA	NA	30683	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.025000	0.522388	
mm_20131.1	chr2	121354975	121355175	-	1	NA	NA	NA	-3566	NM_009897	12716	Mm.252145	NM_009897	ENSMUSG00000000308	Ckmt1	Mt-CK|ScCKmit|UbCKmit|mi-CK	creatine kinase, mitochondrial 1, ubiquitous	protein-coding	0.085000	0.676617	
mm_54279.1	chr6	29201063	29201263	-	1	NA	NA	NA	11134	NM_011829	23917	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine 5'-phosphate dehydrogenase 1	protein-coding	0.035000	0.587065	
mm_79446.1	chr9	56095468	56095668	+	1	NA	NA	NA	5592	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.005000	0.388060	
mm_40700.1	chr5	65860857	65861057	+	1	NA	NA	NA	-2612	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.030000	0.557214	
mm_50753.1	chr6	53287236	53287436	+	1	NA	NA	NA	33	NM_001327821	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.050000	0.502488	
mm_84018.1	chr9	57677043	57677243	-	1	NA	NA	NA	6512	NM_009993	13077	Mm.15537	NM_009993	ENSMUSG00000032310	Cyp1a2	CP12|Cyp1a1|P450-3	cytochrome P450, family 1, subfamily a, polypeptide 2	protein-coding	0.020000	0.348259	
mm_28762.1	chr3	95882138	95882338	-	1	NA	NA	NA	-10	NM_001033302	229599	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	0.065000	0.626866	
mm_88472.1	chr10	77606129	77606329	+	1	NA	NA	NA	132	NM_019929	20610	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.180000	0.741294	
mm_9579.1	chr1	174028175	174028375	-	1	NA	NA	NA	3480	NM_172648	226695	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	0.015000	0.368159	
mm_32376.1	chr4	106315960	106316160	+	1	NA	NA	NA	-153	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.110000	0.736318	
mm_63809.1	chr7	133709242	133709442	+	1	NA	NA	NA	9	NM_025392	66165	Mm.389983	NM_025392	ENSMUSG00000030983	Bccip	1110013J05Rik|TOK-1	BRCA2 and CDKN1A interacting protein	protein-coding	0.105000	0.646766	
mm_163905.1	chr14	30607672	30607872	-	1	NA	NA	NA	2538	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.015000	0.656716	
mm_28993.1	chr3	101300102	101300302	-	1	NA	NA	NA	-12263	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.015000	0.487562	
mm_112162.1	chr12	113330408	113330608	-	1	NA	NA	NA	144605	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.010000	0.517413	
mm_44612.1	chr5	25496271	25496471	-	1	NA	NA	NA	2412	NM_001081383	231051	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0.005000	0.278607	
mm_15010.1	chr2	152563144	152563344	+	1	NA	NA	NA	-9500	NM_207276	403172	Mm.84518	NM_207276	ENSMUSG00000056544	Defb21	4930525K10Rik|Gm121	defensin beta 21	protein-coding	0.010000	0.522388	
mm_93017.1	chr10	87809346	87809546	-	1	NA	NA	NA	-48819	NM_001314010	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.010000	0.502488	
mm_143141.1	chr17	57220947	57221147	-	1	NA	NA	NA	-3819	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.040000	0.572139	-14(CTGCATAAAGGC,-,0.00)
mm_156878.1	chrX	166238704	166238904	+	1	NA	NA	NA	-139	NM_001177961	14758	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	0.055000	0.616915	
mm_97195.1	chr11	75577007	75577207	+	1	NA	NA	NA	-10972	NM_008850	18738	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.015000	0.482587	
mm_125884.1	chr15	75822109	75822309	+	1	NA	NA	NA	19699	NM_172121	223642	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0.030000	0.592040	
mm_34614.1	chr4	150371846	150372046	+	1	NA	NA	NA	90030	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.120000	0.731343	
mm_46405.1	chr5	104093027	104093227	-	1	NA	NA	NA	-15519	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.045000	0.502488	
mm_128606.1	chr15	58352752	58352952	-	1	NA	NA	NA	-28683	NM_177755	268807	Mm.124498	NM_177755	ENSMUSG00000022357	Klhl38	8230402K04Rik	kelch-like 38	protein-coding	0.040000	0.557214	
mm_22835.1	chr3	27482417	27482617	+	1	NA	NA	NA	102478	NR_037275	100526525		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.015000	0.487562	
mm_148838.1	chr19	6363819	6364019	+	1	NA	NA	NA	229	NR_122118	22668	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.135000	0.771144	
mm_116066.1	chr13	27610482	27610682	-	1	NA	NA	NA	0	NM_029355	75596	Mm.46087	NM_029355	ENSMUSG00000021347	Prl7b1	1600014J19Rik|Ghd17|PLP-N|Prlpn	prolactin family 7, subfamily b, member 1	protein-coding	0.005000	0.407960	
mm_146284.1	chr18	78029938	78030138	+	1	NA	NA	NA	27230	NM_001101038	620235	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0.025000	0.572139	
mm_139901.1	chr17	70853652	70853852	+	1	NA	NA	NA	-220	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.075000	0.512438	-87(CTCCAGAAAAGG,-,0.00)
mm_120557.1	chr14	68086614	68086814	+	1	NA	NA	NA	2830	NM_010910	18039	Mm.1956	NM_010910	ENSMUSG00000022055	Nefl	AI847934|CMT2E|NF-L|NF68|Nfl	neurofilament, light polypeptide	protein-coding	0.025000	0.547264	
mm_163232.1	chr11	103363552	103363752	-	1	NA	NA	NA	40	NM_183288	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.040000	0.611940	
mm_131858.1	chr16	23079629	23079829	+	1	NA	NA	NA	21429	NM_001102412	16644	Mm.2160	NM_023125	ENSMUSG00000022875	Kng1	Kng	kininogen 1	protein-coding	0.005000	0.462687	
mm_74163.1	chr8	123407004	123407204	+	1	NA	NA	NA	22	NM_008559	17199	Mm.324942	NM_008559	ENSMUSG00000074037	Mc1r	Mcr1|Mshra|Tob|e	melanocortin 1 receptor	protein-coding	0.010000	0.512438	
mm_17739.1	chr2	32704051	32704251	-	1	NA	NA	NA	8633	NM_130860	107951	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0.005000	0.542289	
mm_102215.1	chr11	54908546	54908746	-	1	NA	NA	NA	5792	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.025000	0.547264	
mm_64568.1	chr7	144896952	144897152	+	1	NA	NA	NA	520	NM_008003	14170	Mm.3904	NM_008003	ENSMUSG00000031073	Fgf15	FGF19	fibroblast growth factor 15	protein-coding	0.070000	0.611940	
mm_51593.1	chr6	83914283	83914483	+	1	NA	NA	NA	30	NM_008717	18139	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	0.090000	0.636816	
mm_149678.1	chr19	20492169	20492369	+	1	NA	NA	NA	-446	NR_015502	320092	Mm.482524	NR_015502		E030003E18Rik	1700127G21Rik	RIKEN cDNA E030003E18 gene	ncRNA	0.010000	0.427861	
mm_2944.1	chr1	132341929	132342129	+	1	NA	NA	NA	25904	NM_001195025	74137	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.005000	0.557214	
mm_150043.1	chr19	29378117	29378317	+	1	NA	NA	NA	10779	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.288557	24(TTTTTTATAGCT,+,0.00)
mm_78513.1	chr9	32912963	32913163	+	1	NA	NA	NA	15903	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.015000	0.417910	-31(GTTTATATACAC,+,0.00)
mm_168808.1	chr12	20623998	20624198	-	1	NA	NA	NA	191681	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.000000	0.532338	
mm_115692.1	chr13	14039483	14039683	-	1	NA	NA	NA	55	NR_130788	70430	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	0.065000	0.587065	
mm_79119.1	chr9	46480254	46480454	+	1	NA	NA	NA	-160368	NM_183104	74361	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding	0.030000	0.552239	
mm_85055.1	chr9	90114717	90114917	-	1	NA	NA	NA	3	NM_001039147	21761	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.100000	0.706468	
mm_85064.1	chr9	90270656	90270856	-	1	NA	NA	NA	13	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.160000	0.825871	
mm_28454.1	chr3	90659345	90659545	-	1	NA	NA	NA	5143	NM_199422	381493	Mm.291525	NM_199422	ENSMUSG00000063767	S100a7a	AY465109|Gm1020|S100A7L1|S100A7f|S100a15|S100a15a|S100a17l1	S100 calcium binding protein A7A	protein-coding	0.000000	0.452736	-33(CCCTTTATGGAA,+,0.00)
mm_110581.1	chr12	56522092	56522292	-	1	NA	NA	NA	7228	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.000000	0.358209	
mm_150322.1	chr19	34573987	34574187	+	1	NA	NA	NA	-9442	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.020000	0.427861	
mm_59959.1	chr7	30427393	30427593	+	1	NA	NA	NA	4189	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.050000	0.676617	
mm_19525.1	chr2	94157798	94157998	-	1	NA	NA	NA	11	NM_019657	56348	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0.090000	0.582090	
mm_76708.1	chr8	94601449	94601649	-	1	NA	NA	NA	177	NM_028221	102122	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	0.110000	0.582090	
mm_720.1	chr1	42699547	42699747	+	1	NA	NA	NA	-689	NR_027891	73100	Mm.467885	NR_027891		2900092D14Rik	-	RIKEN cDNA 2900092D14 gene	ncRNA	0.055000	0.547264	
mm_65195.1	chr7	19696700	19696900	-	1	NA	NA	NA	1598	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.095000	0.666667	
mm_66728.1	chr7	46238427	46238627	-	1	NA	NA	NA	-37	NM_153677	72088	Mm.119709	NM_023649	ENSMUSG00000030838	Ush1c	2010016F01Rik|harmonin	Usher syndrome 1C	protein-coding	0.030000	0.636816	
mm_9765.1	chr1	180947484	180947684	-	1	NA	NA	NA	5066	NM_144794	208795	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.005000	0.552239	-33(ACCTATATAAGG,-,0.00)
mm_87641.1	chr10	58371499	58371699	+	1	NA	NA	NA	145	NM_201242	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.045000	0.547264	
mm_168528.1	chr11	60352808	60353008	-	1	NA	NA	NA	-3	NM_001039092	216810	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	0.095000	0.681592	
mm_158714.1	chrX	162643369	162643569	-	1	NA	NA	NA	189	NM_001290633	194590	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	0.110000	0.716418	
mm_125225.1	chr15	34123620	34123820	+	1	NA	NA	NA	41001	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.015000	0.338308	53(CCTTTTAAATTT,+,0.00)
mm_116661.1	chr13	49195900	49196100	-	1	NA	NA	NA	8453	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.000000	0.577114	
mm_27134.1	chr3	32365803	32366003	-	1	NA	NA	NA	-238	NM_009517	22401	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0.050000	0.626866	
mm_48407.1	chr5	140261466	140261666	-	1	NA	NA	NA	59986	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.010000	0.502488	
mm_105964.1	chr11	115463587	115463787	-	1	NA	NA	NA	1214	NM_001080934	217316	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	0.030000	0.532338	
mm_83706.1	chr9	50727865	50728065	-	1	NA	NA	NA	19	NM_178118	330938	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	0.070000	0.641791	
mm_81215.1	chr9	107587577	107587777	+	1	NA	NA	NA	-41	NM_025903	15983	Mm.215335	NM_025903	ENSMUSG00000010048	Ifrd2	1810034A24Rik|AA470234|AI838527|SKMc15	interferon-related developmental regulator 2	protein-coding	0.095000	0.616915	
mm_171501.1	chr4	146270187	146270387	+	1	NA	NA	NA	-98	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.035000	0.487562	
mm_7508.1	chr1	123470553	123470753	-	1	NA	NA	NA	574906	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.328358	
mm_15001.1	chr2	152476905	152477105	+	1	NA	NA	NA	-58	NM_176950	319579	Mm.190454	NM_176950	ENSMUSG00000049560	Defb20	9230107O10Rik|BD-20|mBD-20	defensin beta 20	protein-coding	0.005000	0.497512	
mm_84963.1	chr9	83806065	83806265	-	1	NA	NA	NA	140	NM_148941	83603	Mm.83949	NM_148941	ENSMUSG00000032262	Elovl4	-	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	protein-coding	0.115000	0.716418	
mm_109812.1	chr12	3426584	3426784	-	1	NA	NA	NA	63	NR_030694	100043040	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0.090000	0.626866	
mm_1385.1	chr1	66944770	66944970	+	1	NA	NA	NA	186	NM_021285	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.035000	0.502488	
mm_123432.1	chr14	64440845	64441045	-	1	NA	NA	NA	81	NM_001253715	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.080000	0.626866	
mm_125560.1	chr15	58889120	58889320	+	1	NA	NA	NA	-9	NM_175226	75841	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0.155000	0.850746	
mm_115926.1	chr13	23571021	23571221	-	1	NA	NA	NA	99	NM_178187	319166	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	0.060000	0.532338	
mm_90096.1	chr10	116964640	116964840	+	1	NA	NA	NA	0	NR_027847	103175	Mm.27138	NR_027846	ENSMUSG00000031294	D630029K05Rik	AI314111|AI875589	RIKEN cDNA D630029K05 gene	ncRNA	0.005000	0.442786	
mm_124719.1	chr15	6579832	6580032	+	1	NA	NA	NA	85	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.025000	0.482587	
mm_145710.1	chr18	62922388	62922588	+	1	NA	NA	NA	161	NM_133237	494504	Mm.391102	NM_133237	ENSMUSG00000071847	Apcdd1	AB023957|AU041258|Drapc1|EIG180	adenomatosis polyposis coli down-regulated 1	protein-coding	0.160000	0.835821	
mm_166327.1	chr5	112292099	112292299	+	1	NA	NA	NA	15508	NM_009419	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.035000	0.567164	
mm_102958.1	chr11	69664754	69664954	-	1	NA	NA	NA	1316	NM_001291058	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.015000	0.497512	
mm_58312.1	chr6	146289318	146289518	-	1	NA	NA	NA	212805	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.010000	0.472637	
mm_162361.1	chr1	62938290	62938490	+	1	NA	NA	NA	-143658	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.015000	0.388060	
mm_42713.1	chr5	120433107	120433307	+	1	NA	NA	NA	1321	NM_008499	16873	Mm.5151	NM_008499	ENSMUSG00000029595	Lhx5	Lim2	LIM homeobox protein 5	protein-coding	0.035000	0.427861	
mm_141405.1	chr17	29347706	29347906	-	1	NA	NA	NA	98	NM_019880	56462	Mm.285322	NM_019880	ENSMUSG00000024012	Mtch1	2310034O17Rik|AI255158|AU018396|C77849|PSAP	mitochondrial carrier 1	protein-coding	0.120000	0.761194	
mm_151128.1	chr19	48205394	48205594	+	1	NA	NA	NA	-531	NM_025696	66673	Mm.70980	NM_025696	ENSMUSG00000063434	Sorcs3	6330404A12Rik|AW045579	sortilin-related VPS10 domain containing receptor 3	protein-coding	0.105000	0.691542	
mm_32423.1	chr4	107126581	107126781	+	1	NA	NA	NA	29790	NM_172873	242603	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	0.035000	0.577114	
mm_45505.1	chr5	72503288	72503488	-	1	NA	NA	NA	820	NM_016869	53419	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.055000	0.606965	
mm_121188.1	chr14	103049552	103049752	+	1	NA	NA	NA	2640	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.010000	0.427861	
mm_81303.1	chr9	108339748	108339948	+	1	NA	NA	NA	768	NM_001329528	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.040000	0.492537	
mm_128448.1	chr15	50771928	50772128	-	1	NA	NA	NA	117021	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.005000	0.318408	
mm_37688.1	chr4	129230720	129230920	-	1	NA	NA	NA	-2909	NM_001285866	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.000000	0.522388	
mm_72456.1	chr8	83200765	83200965	+	1	NA	NA	NA	35513	NM_027758	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.015000	0.507463	87(GCCTCTTTAAGC,-,0.00)
mm_53311.1	chr6	129182584	129182784	+	1	NA	NA	NA	2069	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.005000	0.487562	
mm_58084.1	chr6	136941799	136941999	-	1	NA	NA	NA	0	NM_001301301	11857	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	0.020000	0.502488	
mm_135743.1	chr16	55895099	55895299	-	1	NA	NA	NA	80	NM_001134457	385658	Mm.310635	NM_001134457	ENSMUSG00000075033	Nxpe3	Fam55c|Gm1752|Gm611	neurexophilin and PC-esterase domain family, member 3	protein-coding	0.145000	0.751244	
mm_84593.1	chr9	70036714	70036914	-	1	NA	NA	NA	1274	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.005000	0.492537	
mm_99230.1	chr11	101062409	101062609	+	1	NA	NA	NA	-7585	NM_013792	27419	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.020000	0.582090	
mm_41953.1	chr5	105767204	105767404	+	1	NA	NA	NA	66494	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.010000	0.417910	
mm_140831.1	chr17	23645147	23645347	-	1	NA	NA	NA	22	NM_001033339	240047	Mm.235343	NM_001033339	ENSMUSG00000023903	Mmp25	F730048C11Rik|Leukolysin|MMP20|MT6-MMP	matrix metallopeptidase 25	protein-coding	0.055000	0.646766	
mm_66719.1	chr7	46100549	46100749	-	1	NA	NA	NA	115	NM_001204411	16514	Mm.333863	NM_010602	ENSMUSG00000096146	Kcnj11	Kir6.2|mBIR	potassium inwardly rectifying channel, subfamily J, member 11	protein-coding	0.120000	0.771144	
mm_148476.1	chr19	4100862	4101062	+	1	NA	NA	NA	340	NM_008851	18739	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0.125000	0.741294	
mm_129341.1	chr15	77841953	77842153	-	1	NA	NA	NA	122	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.110000	0.696517	
mm_166122.1	chr4	152199794	152199994	+	1	NA	NA	NA	50	NM_001146058	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.005000	0.547264	
mm_59333.1	chr7	25431632	25431832	+	1	NA	NA	NA	-18846	NM_153576	232983	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0.005000	0.472637	-51(CTTCATAAAAGG,-,0.00),-35(CCCCATATAAAC,-,0.00),-33(CCATATAAACCC,+,0.00)
mm_26875.1	chr3	17694513	17694713	-	1	NA	NA	NA	-95308	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.000000	0.333333	
mm_157293.1	chrX	20862203	20862403	-	1	NA	NA	NA	879	NR_049190	100885829		NR_049190	ENSMUSG00000093408	Mir5617	Gm25192|mir-5617|mmu-mir-5617	microRNA 5617	ncRNA	0.000000	0.542289	
mm_265.1	chr1	20917758	20917958	+	1	NA	NA	NA	27236	NM_028829	74229	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	0.020000	0.447761	
mm_57282.1	chr6	124356973	124357173	-	1	NA	NA	NA	13	NM_001177502	76921	Mm.425335	NM_001177502	ENSMUSG00000079346	1700013D24Rik	-	RIKEN cDNA 1700013D24 gene	protein-coding	0.005000	0.477612	
mm_160755.1	chr10	81930421	81930621	-	1	NA	NA	NA	-9	NM_001346707	100040944		NM_001346707		Gm3055	-	predicted gene 3055	protein-coding	0.060000	0.557214	
mm_125735.1	chr15	73487747	73487947	+	1	NA	NA	NA	-24713	NM_001081066	105841	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.010000	0.447761	
mm_69273.1	chr7	127935388	127935588	-	1	NA	NA	NA	-5375	NM_133351	76560	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0.070000	0.641791	
mm_170113.1	chr17	39845405	39845605	+	1	NA	NA	NA	2508	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.130000	0.706468	
mm_29202.1	chr3	106766696	106766896	-	1	NA	NA	NA	23353	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.000000	0.348259	
mm_37706.1	chr4	129378901	129379101	-	1	NA	NA	NA	-973	NM_028603	73680	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	0.005000	0.542289	
mm_173267.1	chrX	95956676	95956876	-	1	NA	NA	NA	198	NM_152822	76130	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	0.070000	0.592040	
mm_145579.1	chr18	60963706	60963906	+	1	NA	NA	NA	252	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.030000	0.587065	
mm_173241.1	chrX	88759558	88759758	-	1	NA	NA	NA	-105	NR_037313	100499530		NR_037313	ENSMUSG00000084559	Mir1906-2	mmu-mir-1906-2	microRNA 1906-2	ncRNA	0.025000	0.626866	
mm_8424.1	chr1	152469288	152469488	-	1	NA	NA	NA	69521	NM_177756	269132	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0.015000	0.517413	
mm_4160.1	chr1	171029250	171029450	+	1	NA	NA	NA	10424	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.010000	0.502488	
mm_140828.1	chr17	23644918	23645118	-	1	NA	NA	NA	251	NM_001033339	240047	Mm.235343	NM_001033339	ENSMUSG00000023903	Mmp25	F730048C11Rik|Leukolysin|MMP20|MT6-MMP	matrix metallopeptidase 25	protein-coding	0.040000	0.616915	
mm_68025.1	chr7	100979148	100979348	-	1	NA	NA	NA	-14882	NM_183168	233571	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.000000	0.567164	
mm_43908.1	chr5	144255733	144255933	+	1	NA	NA	NA	608	NM_018772	55950	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.065000	0.666667	
mm_49909.1	chr6	39003943	39004143	+	1	NA	NA	NA	63543	NR_040523	69986	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.025000	0.383085	
mm_58999.1	chr7	19176425	19176625	+	1	NA	NA	NA	104	NM_001347582	72205	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0.055000	0.641791	
mm_106738.1	chr12	3904094	3904294	+	1	NA	NA	NA	12450	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.015000	0.537313	
mm_14820.1	chr2	146855794	146855994	+	1	NA	NA	NA	5	NM_001033298	228730	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	0.110000	0.741294	
mm_58412.1	chr7	3289181	3289381	+	1	NA	NA	NA	243	NM_001093764	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.055000	0.666667	
mm_90867.1	chr10	8886109	8886309	-	1	NA	NA	NA	-139	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.060000	0.641791	
mm_95583.1	chr11	53187509	53187709	+	1	NA	NA	NA	-67553	NR_046047	790909	Mm.404626	NR_046047	ENSMUSG00000087668	Gm11186	OTTMUSG00000000039	predicted gene 11186	ncRNA	0.005000	0.358209	
mm_101235.1	chr11	20631623	20631823	-	1	NA	NA	NA	-254	NM_001038625	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.065000	0.631841	-36(TGCCATAAATGC,-,0.00)
mm_101101.1	chr11	11931604	11931804	-	1	NA	NA	NA	-33560	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.020000	0.298507	
mm_168893.1	chr12	48559873	48560073	-	1	NA	NA	NA	-258511	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0.020000	0.442786	-29(CTGCTTAAAAGA,-,0.00)
mm_151183.1	chr19	53390697	53390897	+	1	NA	NA	NA	-224	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	0.090000	0.646766	
mm_114284.1	chr13	58402462	58402662	+	1	NA	NA	NA	-35	NM_028904	74386	Mm.85289	NM_028904	ENSMUSG00000035367	Rmi1	4932432N11Rik|C79893	RecQ mediated genome instability 1	protein-coding	0.110000	0.676617	
mm_171790.1	chr5	115358986	115359186	+	1	NA	NA	NA	-10131	NM_007748	12861	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	0.035000	0.626866	
mm_44350.1	chr5	17788183	17788383	-	1	NA	NA	NA	47613	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.308458	
mm_41669.1	chr5	99385515	99385715	+	1	NA	NA	NA	-132688	NM_145839	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.015000	0.407960	
mm_245.1	chr1	19209066	19209266	+	1	NA	NA	NA	252	NM_001286340	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.035000	0.502488	
mm_122351.1	chr14	38833311	38833511	-	1	NA	NA	NA	-64891	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA	0.005000	0.402985	
mm_36142.1	chr4	59472737	59472937	-	1	NA	NA	NA	-34204	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.020000	0.407960	
mm_50086.1	chr6	41523810	41524010	+	1	NA	NA	NA	2134	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.015000	0.492537	
mm_5045.1	chr1	194619825	194620025	+	1	NA	NA	NA	96	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	0.095000	0.676617	
mm_127715.1	chr15	103018869	103019069	+	1	NA	NA	NA	4059	NR_030526	751557		NR_030526	ENSMUSG00000076010	Mir615	Mir|Mirn615|mir-615|mmu-mir-615	microRNA 615	ncRNA	0.030000	0.492537	
mm_77342.1	chr8	119569985	119570185	-	1	NA	NA	NA	5115	NM_175185	72552	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	0.015000	0.542289	
mm_66738.1	chr7	46672403	46672603	-	1	NA	NA	NA	34	NM_009414	21990	Mm.248684	NM_009414	ENSMUSG00000040046	Tph1	Tph	tryptophan hydroxylase 1	protein-coding	0.030000	0.487562	
mm_25736.1	chr3	122885182	122885382	+	1	NA	NA	NA	-9790	NM_007980	14079	Mm.28398	NM_007980	ENSMUSG00000023057	Fabp2	Fabpi|I-FABP	fatty acid binding protein 2, intestinal	protein-coding	0.000000	0.432836	
mm_99768.1	chr11	107012803	107013003	+	1	NA	NA	NA	-13378	NM_010655	16647	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.045000	0.507463	
mm_132760.1	chr16	44531159	44531359	+	1	NA	NA	NA	26870	NR_037242	100526478		NR_037242	ENSMUSG00000093046	Mir3081	mir-3081|mmu-mir-3081	microRNA 3081	ncRNA	0.030000	0.442786	
mm_84506.1	chr9	67023230	67023430	-	1	NA	NA	NA	20541	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.015000	0.417910	
mm_81423.1	chr9	109056302	109056502	+	1	NA	NA	NA	1536	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.015000	0.626866	
mm_136337.1	chr16	92596020	92596220	-	1	NA	NA	NA	97973	NM_172469	209195	Mm.44747	NM_172469	ENSMUSG00000022949	Clic6	5730466J16Rik|AL022908|AW045520|CLIC1L	chloride intracellular channel 6	protein-coding	0.020000	0.527363	
mm_162558.1	chr1	172206531	172206731	-	1	NA	NA	NA	173	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.075000	0.686567	
mm_12119.1	chr2	61608856	61609056	+	1	NA	NA	NA	15859	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.005000	0.427861	-21(TTCTATAAAAGC,-,0.00),55(GTGTATAAAGGA,-,0.00)
mm_154070.1	chr19	56377855	56378055	-	1	NA	NA	NA	12083	NM_198059	18175	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	0.010000	0.393035	
mm_36005.1	chr4	56757255	56757455	-	1	NA	NA	NA	13933	NM_009611	11470	Mm.30959	NM_009611	ENSMUSG00000070979	Actl7a	Tact2	actin-like 7a	protein-coding	0.010000	0.497512	
mm_107697.1	chr12	55399714	55399914	+	1	NA	NA	NA	989	NM_011968	26443	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.015000	0.402985	
mm_150039.1	chr19	29377701	29377901	+	1	NA	NA	NA	10363	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.000000	0.353234	
mm_112135.1	chr12	113000156	113000356	-	1	NA	NA	NA	365	NM_028193	72308	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	0.165000	0.696517	
mm_136008.1	chr16	75876383	75876583	-	1	NA	NA	NA	32783	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.025000	0.497512	
mm_100073.1	chr11	115440447	115440647	+	1	NA	NA	NA	2	NM_001033775	432613	Mm.308822	NM_001033775	ENSMUSG00000070332	Trim80	4933422H20Rik|Trim47l	tripartite motif-containing 80	protein-coding	0.030000	0.542289	
mm_144087.1	chr17	94834651	94834851	-	1	NA	NA	NA	48	NR_045964	100038746	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	0.045000	0.567164	
mm_105089.1	chr11	100882059	100882259	-	1	NA	NA	NA	21675	NM_001164062	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.020000	0.567164	
mm_49289.1	chr6	17666170	17666370	+	1	NA	NA	NA	-27724	NM_001289624	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.000000	0.323383	
mm_62075.1	chr7	92819804	92820004	+	1	NA	NA	NA	54328	NM_001080995	74041	Mm.26468	NM_028729	ENSMUSG00000030641	Ddias	4632434I11Rik|noxin	DNA damage-induced apoptosis suppressor	protein-coding	0.035000	0.547264	
mm_3222.1	chr1	135847881	135848081	+	1	NA	NA	NA	7120	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.035000	0.557214	
mm_134918.1	chr16	30321541	30321741	-	1	NA	NA	NA	-10860	NM_008148	14729	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	0.005000	0.333333	38(GGCTTTTTAGGA,-,0.00)
mm_98139.1	chr11	87578385	87578585	+	1	NA	NA	NA	96	NM_001284398	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding	0.075000	0.696517	
mm_100688.1	chr11	3505367	3505567	-	1	NA	NA	NA	-646	NM_172439	170835	Mm.24313	NM_172439	ENSMUSG00000034570	Inpp5j	Pib5pa|Pipp	inositol polyphosphate 5-phosphatase J	protein-coding	0.015000	0.517413	
mm_35521.1	chr4	41206932	41207132	-	1	NA	NA	NA	68103	NM_026872	68926	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0.020000	0.507463	-82(CCATTTATAGAC,+,0.00)
mm_85687.1	chr9	108002311	108002511	-	1	NA	NA	NA	-237	NM_013785	27399	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0.075000	0.562189	
mm_43991.1	chr5	146781839	146782039	+	1	NA	NA	NA	13017	NM_011669	22217	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.020000	0.482587	
mm_66148.1	chr7	31137213	31137413	-	1	NA	NA	NA	-10290	NM_011322	20266	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	0.000000	0.492537	
mm_137655.1	chr17	28575662	28575862	+	1	NA	NA	NA	43	NM_026571	328789	Mm.284760	NM_026571	ENSMUSG00000062252	Lhfpl5	9330179O15Rik|Tmhs|hscy	lipoma HMGIC fusion partner-like 5	protein-coding	0.070000	0.651741	
mm_62802.1	chr7	112856521	112856721	+	1	NA	NA	NA	97237	NM_001166585	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.015000	0.467662	
mm_79848.1	chr9	64817850	64818050	+	1	NA	NA	NA	6939	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.015000	0.323383	
mm_134435.1	chr16	18089062	18089262	-	1	NA	NA	NA	28	NM_011172	19125	Mm.28456	NM_011172	ENSMUSG00000003526	Prodh	Pro-1|Pro1|Ym24d07	proline dehydrogenase	protein-coding	0.095000	0.666667	
mm_158615.1	chrX	152644351	152644551	-	1	NA	NA	NA	97	NM_001290686	110380	Mm.40796	NM_172441	ENSMUSG00000045180	Shroom2	4832440C16|Apxl|C630003H05Rik|Shrm2	shroom family member 2	protein-coding	0.020000	0.547264	
mm_6039.1	chr1	59670693	59670893	-	1	NA	NA	NA	41	NM_009460	22218	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0.095000	0.606965	
mm_69817.1	chr7	141264164	141264364	-	1	NA	NA	NA	2160	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.030000	0.597015	
mm_40752.1	chr5	66857366	66857566	+	1	NA	NA	NA	-110950	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.005000	0.427861	
mm_49143.1	chr6	10883584	10883784	+	1	NA	NA	NA	90694	NR_033776	57866	Mm.4397	NR_033776		AA545190	-	EST AA545190	ncRNA	0.010000	0.383085	
mm_93922.1	chr10	127121037	127121237	-	1	NA	NA	NA	23	NM_177614	216440	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.075000	0.611940	
mm_86823.1	chr10	20959602	20959802	+	1	NA	NA	NA	7155	NM_026203	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.010000	0.432836	
mm_56586.1	chr6	107103503	107103703	-	1	NA	NA	NA	-303516	NM_175357	58799	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.020000	0.437811	
mm_13049.1	chr2	91099481	91099681	+	1	NA	NA	NA	2903	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.015000	0.532338	
mm_43205.1	chr5	129114906	129115106	+	1	NA	NA	NA	18256	NM_001347486	243277	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding	0.025000	0.437811	
mm_145647.1	chr18	61127684	61127884	+	1	NA	NA	NA	10316	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.005000	0.532338	
mm_171425.1	chr4	134159692	134159892	+	1	NA	NA	NA	27293	NM_144527	70012	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	0.070000	0.557214	-30(CCCTATAAAAAG,-,0.00)
mm_71093.1	chr8	34821371	34821571	+	1	NA	NA	NA	13861	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.020000	0.522388	
mm_63645.1	chr7	128687938	128688138	+	1	NA	NA	NA	-832	NM_001346517	101490	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0.085000	0.636816	
mm_116438.1	chr13	42538120	42538320	-	1	NA	NA	NA	-142579	NM_001302635	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.005000	0.402985	
mm_121820.1	chr14	20456188	20456388	-	1	NA	NA	NA	-4063	NM_001163639	76670	Mm.159759	NM_029698	ENSMUSG00000039543	Cfap70	Ttc18	cilia and flagella associated protein 70	protein-coding	0.010000	0.353234	
mm_140306.1	chr17	85691052	85691252	+	1	NA	NA	NA	-2898	NM_011380	20472	Mm.5039	NM_011380	ENSMUSG00000024134	Six2	-	sine oculis-related homeobox 2	protein-coding	0.015000	0.547264	
mm_93194.1	chr10	94036636	94036836	-	1	NA	NA	NA	735	NM_053072	13998	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	0.015000	0.447761	
mm_39818.1	chr5	30746013	30746213	+	1	NA	NA	NA	34218	NM_023047	65254	Mm.27732	NM_023047	ENSMUSG00000029168	Dpysl5	CRAM|CRMP-5|Crmp5	dihydropyrimidinase-like 5	protein-coding	0.005000	0.477612	-52(TTGCATTAAAGG,-,0.00)
mm_155456.1	chrX	73502698	73502898	+	1	NA	NA	NA	-288	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.025000	0.621891	
mm_92078.1	chr10	62725994	62726194	-	1	NA	NA	NA	5	NM_001033260	216021	Mm.39821	NM_001033260	ENSMUSG00000036923	Stox1	4732470K04Rik|Gm63	storkhead box 1	protein-coding	0.120000	0.766169	
mm_19820.1	chr2	110839931	110840131	-	1	NA	NA	NA	110213	NM_001128103	228432	Mm.483325	NM_001081556	ENSMUSG00000074968	Ano3	AI838058|B230324K02Rik|Tmem16c	anoctamin 3	protein-coding	0.020000	0.452736	
mm_30485.1	chr3	155055219	155055419	-	1	NA	NA	NA	88	NM_177066	435766	Mm.210428	NM_177066	ENSMUSG00000040086	Tnni3k	Cark|D830019J24Rik	TNNI3 interacting kinase	protein-coding	0.020000	0.402985	
mm_45344.1	chr5	65858006	65858206	-	1	NA	NA	NA	-5463	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.035000	0.547264	
mm_105860.1	chr11	113771415	113771615	-	1	NA	NA	NA	-19700	NM_001163346	56699	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.015000	0.422886	
mm_78302.1	chr9	22475736	22475936	+	1	NA	NA	NA	121	NM_178415	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.030000	0.567164	
mm_75367.1	chr8	45306051	45306251	-	1	NA	NA	NA	-11316	NM_008455	16621	Mm.482691	NM_008455	ENSMUSG00000109764	Klkb1	APS|Kal-3|Kal3|Klk3|PSA	kallikrein B, plasma 1	protein-coding	0.005000	0.407960	
mm_141636.1	chr17	33033289	33033489	-	1	NA	NA	NA	-8	NM_028543	73451	Mm.129453	NM_028543	ENSMUSG00000067430	Zfp763	1700065O13Rik|AI839635	zinc finger protein 763	protein-coding	0.025000	0.477612	
mm_66816.1	chr7	48167477	48167677	-	1	NA	NA	NA	1408	NM_207538	404239	Mm.377927	NM_207538	ENSMUSG00000070551	Mrgprb5	Mgrg11|MrgB5	MAS-related GPR, member B5	protein-coding	0.010000	0.412935	
mm_66294.1	chr7	38019397	38019597	-	1	NA	NA	NA	55	NM_011274	19777	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	0.175000	0.786070	
mm_15291.1	chr2	155276993	155277193	+	1	NA	NA	NA	729	NR_046364	66734	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0.040000	0.606965	
mm_116467.1	chr13	43480947	43481147	-	1	NA	NA	NA	-74	NM_019930	56705	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.170000	0.805970	
mm_16042.1	chr2	167698040	167698240	+	1	NA	NA	NA	6963	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.010000	0.542289	
mm_134935.1	chr16	31142022	31142222	-	1	NA	NA	NA	59116	NM_030138	78618	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.015000	0.522388	
mm_123104.1	chr14	55882656	55882856	-	1	NA	NA	NA	1500	NM_019820	56410	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0.020000	0.562189	
mm_127988.1	chr15	12549254	12549454	-	1	NA	NA	NA	43202	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.050000	0.651741	
mm_35326.1	chr4	25895535	25895735	-	1	NA	NA	NA	-95632	NM_010243	14348	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.010000	0.383085	-19(AAGTATAAAAAG,-,0.00)
mm_139903.1	chr17	70865015	70865215	+	1	NA	NA	NA	-11583	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.015000	0.452736	
mm_76419.1	chr8	84969445	84969645	-	1	NA	NA	NA	-77	NM_001317385	21672	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0.115000	0.716418	
mm_168235.1	chr10	81694088	81694288	-	1	NA	NA	NA	-10637	NM_001243067	73610	Mm.490466	NM_001243067	ENSMUSG00000096795	Zfp433	1700123A16Rik	zinc finger protein 433	protein-coding	0.040000	0.427861	
mm_4813.1	chr1	185362950	185363150	+	1	NA	NA	NA	-45	NM_029735	107508	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	0.110000	0.666667	
mm_171466.1	chr4	145730264	145730464	-	1	NA	NA	NA	-51179	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.035000	0.442786	
mm_106546.1	chr11	120579224	120579424	-	1	NA	NA	NA	2296	NM_133796	192662	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.035000	0.557214	
mm_26267.1	chr3	142501577	142501777	+	1	NA	NA	NA	4743	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.015000	0.512438	
mm_55971.1	chr6	85832126	85832326	-	1	NA	NA	NA	-336	NM_023455	68396	Mm.154782	NM_023455	ENSMUSG00000030004	Nat8	0610037O16Rik|CCNAT|Cml4	N-acetyltransferase 8 (GCN5-related)	protein-coding	0.010000	0.552239	
mm_150236.1	chr19	34008231	34008431	+	1	NA	NA	NA	77	NM_001205349	240633	Mm.58924	NM_172837	ENSMUSG00000024771	Lipk	9930115F20|BC055815|Lipl2	lipase, family member K	protein-coding	0.020000	0.472637	59(GTGTTTTAAGGG,-,0.00)
mm_170913.1	chr2	35340234	35340434	+	1	NA	NA	NA	-3325	NM_013515	13830	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.035000	0.542289	
mm_159257.1	chr2	154257754	154257954	+	1	NA	NA	NA	-25	NM_175167	71425	Mm.389341	NM_175167	ENSMUSG00000067998	Bpifb9a	4833413D08Rik|AI413838	BPI fold containing family B, member 9A	protein-coding	0.005000	0.522388	-32(GGCTATAAAAGG,-,0.00)
mm_92525.1	chr10	78718187	78718387	-	1	NA	NA	NA	6	NM_009809	12365	Mm.20940	NM_009809	ENSMUSG00000005355	Casp14	MICE|mini-ICE	caspase 14	protein-coding	0.030000	0.527363	
mm_117623.1	chr13	91861263	91861463	-	1	NA	NA	NA	15522	NM_198415	76722	Mm.316438	NM_198415	ENSMUSG00000021622	Ckmt2	2300008A19Rik|ScCKmit	creatine kinase, mitochondrial 2	protein-coding	0.045000	0.601990	
mm_69127.1	chr7	127026488	127026688	-	1	NA	NA	NA	-109	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.175000	0.870647	
mm_113113.1	chr13	24417566	24417766	+	1	NA	NA	NA	2544	NM_001284520	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.000000	0.402985	
mm_148898.1	chr19	6909717	6909917	+	1	NA	NA	NA	119	NM_026306	67674	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.100000	0.611940	
mm_12078.1	chr2	59779635	59779835	+	1	NA	NA	NA	102871	NM_001159636	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.005000	0.601990	
mm_115311.1	chr13	112318353	112318553	+	1	NA	NA	NA	29935	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.030000	0.482587	
mm_67072.1	chr7	68149741	68149941	-	1	NA	NA	NA	114392	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.020000	0.557214	
mm_19531.1	chr2	94264873	94265073	-	1	NA	NA	NA	-3574	NR_030431	735259		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.025000	0.562189	-94(GTCTATAAATAG,-,0.00)
mm_106266.1	chr11	117969084	117969284	-	1	NA	NA	NA	182	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.110000	0.661692	
mm_158814.1	chrX	167308065	167308265	-	1	NA	NA	NA	22406	NM_001290757	170743	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	0.010000	0.457711	
mm_150755.1	chr19	43920972	43921172	+	1	NA	NA	NA	19126	NM_028029	71972	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.050000	0.552239	
mm_110652.1	chr12	59046025	59046225	-	1	NA	NA	NA	15347	NM_001306218	78232	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	0.005000	0.308458	
mm_40444.1	chr5	53591372	53591572	+	1	NA	NA	NA	986	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.025000	0.517413	
mm_160121.1	chr7	27674551	27674751	+	1	NA	NA	NA	-10	NM_198417	112415	Mm.145362	NM_198417	ENSMUSG00000057093	Zfp607b	C030039L03Rik	zinc finger protein 607B	protein-coding	0.070000	0.631841	
mm_17326.1	chr2	26503537	26503737	-	1	NA	NA	NA	185	NM_008714	18128	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0.110000	0.751244	
mm_71990.1	chr8	70616843	70617043	+	1	NA	NA	NA	99	NM_153074	211228	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0.035000	0.601990	
mm_64014.1	chr7	140218261	140218461	+	1	NA	NA	NA	94	NM_172909	244233	Mm.19283	NM_172909	ENSMUSG00000025461	Cd163l1	B430307C05|E430002D04Rik|Scart1	CD163 molecule-like 1	protein-coding	0.015000	0.567164	
mm_18070.1	chr2	42288827	42289027	-	1	NA	NA	NA	158641	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.005000	0.383085	
mm_28691.1	chr3	95521051	95521251	-	1	NA	NA	NA	-5635	NM_021281	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.005000	0.432836	-38(GCATTTAAAGTT,+,0.00)
mm_30550.1	chr4	3687819	3688019	+	1	NA	NA	NA	9798	NM_010747	17096	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.020000	0.467662	
mm_27293.1	chr3	45375914	45376114	-	1	NA	NA	NA	2246	NR_045172	72511	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.030000	0.417910	
mm_42405.1	chr5	115011060	115011260	+	1	NA	NA	NA	-364	NM_029012	74585	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	0.165000	0.805970	
mm_126120.1	chr15	78325727	78325927	+	1	NA	NA	NA	-163	NM_007780	12983	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.010000	0.572139	
mm_10826.1	chr2	24385233	24385433	+	1	NA	NA	NA	-64	NM_177611	215632	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.005000	0.552239	
mm_10279.1	chr2	9884428	9884628	+	1	NA	NA	NA	3282	NR_024257	381347	Mm.441450	NR_024257		4930412O13Rik	ENSMUSG00000075535|Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.040000	0.542289	
mm_51964.1	chr6	91758016	91758216	+	1	NA	NA	NA	49277	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.020000	0.582090	
mm_19400.1	chr2	91635792	91635992	-	1	NA	NA	NA	565	NM_010168	14061	Mm.89048	NM_010168	ENSMUSG00000027249	F2	Cf-2|Cf2|FII	coagulation factor II	protein-coding	0.040000	0.631841	
mm_53147.1	chr6	125241811	125242011	+	1	NA	NA	NA	-4884	NM_001286753	21940	Mm.367714	NM_001033126	ENSMUSG00000030336	Cd27	S152|Tnfrsf7|Tp55	CD27 antigen	protein-coding	0.015000	0.492537	-28(GCTTTAATGCTG,+,0.00),14(GCCTAGTAAAGC,-,0.00)
mm_53947.1	chr6	5220394	5220594	-	1	NA	NA	NA	-26548	NM_011134	18979	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.010000	0.532338	
mm_47730.1	chr5	130171636	130171836	-	1	NA	NA	NA	-83	NM_001199059	56715	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.130000	0.731343	
mm_19914.1	chr2	115344180	115344380	-	1	NA	NA	NA	0	NR_040516	78193	Mm.189508	NR_040516	ENSMUSG00000087309	4930528P14Rik	-	RIKEN cDNA 4930528P14 gene	ncRNA	0.010000	0.467662	
mm_97036.1	chr11	72267187	72267387	+	1	NA	NA	NA	443	NR_045922	73366	Mm.396157	NR_045922	ENSMUSG00000086951	1700051A21Rik	-	RIKEN cDNA 1700051A21 gene	ncRNA	0.095000	0.626866	
mm_50398.1	chr6	48718661	48718861	+	1	NA	NA	NA	140	NM_146167	231932	Mm.30479	NM_146167	ENSMUSG00000043931	Gimap7	IAN7|Ian3	GTPase, IMAP family member 7	protein-coding	0.005000	0.517413	
mm_33262.1	chr4	127208197	127208397	+	1	NA	NA	NA	35417	NM_001302081	242667	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	discs, large (Drosophila) homolog-associated protein 3	protein-coding	0.015000	0.363184	
mm_40407.1	chr5	53057629	53057829	+	1	NA	NA	NA	8376	NM_011402	20531	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	0.005000	0.442786	
mm_158410.1	chrX	136976745	136976945	-	1	NA	NA	NA	29	NM_001081983	666244	Mm.381904	NM_001081983	ENSMUSG00000089768	Tmsb15b1	Tm15b	thymosin beta 15b1	protein-coding	0.030000	0.547264	
mm_110070.1	chr12	21417145	21417345	-	1	NA	NA	NA	191	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.165000	0.796020	
mm_26686.1	chr3	156562581	156562781	+	1	NA	NA	NA	887	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.020000	0.512438	
mm_54203.1	chr6	24955988	24956188	-	1	NA	NA	NA	37	NM_177013	319832	Mm.127446	NM_177013	ENSMUSG00000048022	Tmem229a	6332401O19Rik	transmembrane protein 229A	protein-coding	0.105000	0.741294	
mm_562.1	chr1	38032180	38032380	+	1	NA	NA	NA	34270	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.005000	0.383085	
mm_43822.1	chr5	142960910	142961110	+	1	NA	NA	NA	655	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.145000	0.696517	
mm_144755.1	chr18	35726929	35727129	+	1	NA	NA	NA	40	NM_001033168	73449	Mm.379225	NM_001033168	ENSMUSG00000073598	1700066B19Rik	-	RIKEN cDNA 1700066B19 gene	protein-coding	0.020000	0.562189	
mm_98465.1	chr11	94948623	94948823	+	1	NA	NA	NA	12499	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.035000	0.646766	
mm_152813.1	chr19	23092782	23092982	-	1	NA	NA	NA	-48344	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.010000	0.412935	
mm_72494.1	chr8	83715414	83715614	+	1	NA	NA	NA	337	NM_197982	68278	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	0.100000	0.686567	
mm_52540.1	chr6	115931851	115932051	+	1	NA	NA	NA	24	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.045000	0.606965	-76(CACTTTATAAGG,-,0.00),-74(CTTTATAAGGGT,+,0.00)
mm_16730.1	chr2	9141398	9141598	-	1	NA	NA	NA	-48017	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.000000	0.368159	
mm_6361.1	chr1	72186405	72186605	-	1	NA	NA	NA	25802	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.025000	0.542289	
mm_7114.1	chr1	89968624	89968824	-	1	NA	NA	NA	-37548	NM_010262	14472	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.090000	0.706468	
mm_127018.1	chr15	96063115	96063315	+	1	NA	NA	NA	16338	NR_126493	402773	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0.000000	0.437811	
mm_76173.1	chr8	82392392	82392592	-	1	NA	NA	NA	10094	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.010000	0.477612	
mm_109130.1	chr12	105837337	105837537	+	1	NA	NA	NA	52740	NM_001347440	18789	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0.020000	0.437811	
mm_122292.1	chr14	34561644	34561844	-	1	NA	NA	NA	26863	NM_001039074	24131	Mm.29733	NM_011918	ENSMUSG00000021798	Ldb3	AW742271|PDLIM6|ZASP	LIM domain binding 3	protein-coding	0.020000	0.552239	
mm_134189.1	chr16	10966496	10966696	-	1	NA	NA	NA	26525	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.020000	0.522388	
mm_81516.1	chr9	110036717	110036917	+	1	NA	NA	NA	-15204	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.005000	0.452736	
mm_58008.1	chr6	136499618	136499818	-	1	NA	NA	NA	-19133	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.025000	0.522388	
mm_107505.1	chr12	40037981	40038181	+	1	NA	NA	NA	-94	NM_001039515	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.180000	0.776119	
mm_13939.1	chr2	121170579	121170779	+	1	NA	NA	NA	446	NM_001290819	99334	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	0.080000	0.606965	
mm_137049.1	chr17	17917735	17917935	+	1	NA	NA	NA	30011	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.000000	0.373134	
mm_57739.1	chr6	128996308	128996508	-	1	NA	NA	NA	3447	NR_015455	408064	Mm.172429	NR_015455		BC064078	-	cDNA sequence BC064078	ncRNA	0.000000	0.522388	
mm_127587.1	chr15	102331837	102332037	+	1	NA	NA	NA	228	NM_021713	60315	Mm.251638	NM_021713	ENSMUSG00000001285	Myg1	0610023A07Rik|2810433J21Rik|5830429P19Rik|AI325965|Gamm1	melanocyte proliferating gene 1	protein-coding	0.100000	0.631841	
mm_7098.1	chr1	88701999	88702199	-	1	NA	NA	NA	92	NM_177305	320982	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.125000	0.751244	
mm_154749.1	chrX	10582050	10582250	+	1	NA	NA	NA	97034	NM_019634	21912	Mm.18590	NM_019634	ENSMUSG00000058254	Tspan7	1200014P11Rik|A15|AI323365|Cd231|Mxs1|PE31|R74651|TALLA|Tm4sf2	tetraspanin 7	protein-coding	0.020000	0.482587	-48(GCCCTGAAAAGC,-,0.00)
mm_30691.1	chr4	11545982	11546182	+	1	NA	NA	NA	-12838	NM_001039556	623474	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	0.045000	0.542289	
mm_116659.1	chr13	49191606	49191806	-	1	NA	NA	NA	4159	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.010000	0.552239	
mm_34699.1	chr4	152076105	152076305	+	1	NA	NA	NA	-10658	NR_104381	269608	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	0.020000	0.597015	
mm_64347.1	chr7	142380803	142381003	+	1	NA	NA	NA	6967	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.015000	0.487562	
mm_69463.1	chr7	133602038	133602238	-	1	NA	NA	NA	-23	NM_028654	73808	Mm.159067	NM_028654	ENSMUSG00000030976	Tex36	4930404H21Rik	testis expressed 36	protein-coding	0.005000	0.542289	
mm_46104.1	chr5	92347704	92347904	-	1	NA	NA	NA	1085	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.025000	0.462687	
mm_164417.1	chr16	38712896	38713096	-	1	NA	NA	NA	39	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.090000	0.671642	
mm_154630.1	chrX	7762571	7762771	+	1	NA	NA	NA	10	NM_172472	209446	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	0.055000	0.641791	
mm_110670.1	chr12	65071001	65071201	-	1	NA	NA	NA	2837	NM_013902	30795	Mm.28480	NM_013902	ENSMUSG00000020949	Fkbp3	25kDa|FKBP-3|FKBP25	FK506 binding protein 3	protein-coding	0.010000	0.343284	
mm_27405.1	chr3	51340418	51340618	-	1	NA	NA	NA	126	NM_001291059	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.140000	0.766169	
mm_97941.1	chr11	83662487	83662687	+	1	NA	NA	NA	3	NM_013652	20303	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.020000	0.542289	-35(GTCCCTATAAAG,-,0.00),-33(CCCTATAAAGAG,+,0.00),-33(CCCTATAAAGAG,-,0.00)
mm_4457.1	chr1	172699095	172699295	+	1	NA	NA	NA	1139	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding	0.005000	0.378109	
mm_29779.1	chr3	127408897	127409097	-	1	NA	NA	NA	61	NM_001327939	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.040000	0.606965	
mm_17324.1	chr2	26502111	26502311	-	1	NA	NA	NA	1611	NM_008714	18128	Mm.290610	NM_008714	ENSMUSG00000026923	Notch1	9930111A19Rik|Mis6|N1|Tan1|lin-12	notch 1	protein-coding	0.025000	0.507463	
mm_34846.1	chr4	155414882	155415082	+	1	NA	NA	NA	5792	NM_001166029	544678	Mm.472798	NM_177674	ENSMUSG00000078490	Cfap74	2010015L04Rik|A530045M11	cilia and flagella associated protein 74	protein-coding	0.020000	0.497512	
mm_147868.1	chr18	64476516	64476716	-	1	NA	NA	NA	12450	NM_007998	14151	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0.005000	0.323383	
mm_123551.1	chr14	66834212	66834412	-	1	NA	NA	NA	34288	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.030000	0.542289	
mm_77097.1	chr8	110902355	110902555	-	1	NA	NA	NA	33	NM_172283	234730	Mm.102591	NM_172283	ENSMUSG00000033703	Fuk	1110046B12Rik|AI303278	fucokinase	protein-coding	0.095000	0.641791	
mm_101810.1	chr11	46378239	46378439	-	1	NA	NA	NA	11176	NM_001281968	16428	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	0.010000	0.462687	
mm_56773.1	chr6	116628828	116629028	-	1	NA	NA	NA	0	NM_001302439	67255	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0.145000	0.776119	
mm_160172.1	chr7	45282388	45282588	+	1	NA	NA	NA	-385	NM_001033176	76713	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0.035000	0.582090	
mm_146231.1	chr18	77119718	77119918	+	1	NA	NA	NA	54138	NM_001164168	17344	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0.005000	0.487562	
mm_105985.1	chr11	115612858	115613058	-	1	NA	NA	NA	11	NM_001243584	69674	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	0.070000	0.666667	
mm_78285.1	chr9	22156789	22156989	+	1	NA	NA	NA	43	NM_001082532	66268	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0.095000	0.671642	
mm_128929.1	chr15	74636211	74636411	-	1	NA	NA	NA	7	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.005000	0.542289	
mm_157126.1	chrX	9446643	9446843	-	1	NA	NA	NA	22581	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.457711	
mm_104251.1	chr11	88864463	88864663	-	1	NA	NA	NA	23	NM_001042541	11640	Mm.2969	NM_009648	ENSMUSG00000018428	Akap1	AKAP121|AKAP84|Akap|C76494|C81186|DAKAP1|S-AKAP84	A kinase (PRKA) anchor protein 1	protein-coding	0.155000	0.751244	
mm_43219.1	chr5	129755598	129755798	+	1	NA	NA	NA	30623	NM_008095	14467	Mm.12468	NM_008095	ENSMUSG00000029432	Gbas	AV006093|Nipsnap2	glioblastoma amplified sequence	protein-coding	0.000000	0.303483	
mm_146373.1	chr18	82584692	82584892	+	1	NA	NA	NA	30284	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.030000	0.616915	
mm_81931.1	chr9	120179809	120180009	+	1	NA	NA	NA	30167	NM_001039364	17433	Mm.486167	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.020000	0.373134	
mm_94644.1	chr11	16915258	16915458	+	1	NA	NA	NA	35924	NR_110421	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.005000	0.383085	
mm_48932.1	chr6	4537686	4537886	+	1	NA	NA	NA	32168	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.010000	0.552239	
mm_82466.1	chr9	15914320	15914520	-	1	NA	NA	NA	-39864	NM_145712	244701	Mm.222631	NM_145712	ENSMUSG00000050901	Mtnr1b	Mel-1B-R|Mel1b|Mt2	melatonin receptor 1B	protein-coding	0.005000	0.368159	
mm_120348.1	chr14	63860226	63860426	+	1	NA	NA	NA	14	NM_028228	72400	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	0.105000	0.636816	
mm_7055.1	chr1	87128273	87128473	-	1	NA	NA	NA	3365	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.020000	0.547264	
mm_169617.1	chr15	38078334	38078534	-	1	NA	NA	NA	420	NM_001112721	70790	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.115000	0.731343	
mm_158005.1	chrX	95196549	95196749	-	1	NA	NA	NA	-30110	NM_001033329	236915	Mm.44841	NM_001033329	ENSMUSG00000025656	Arhgef9	9630036L12Rik	CDC42 guanine nucleotide exchange factor (GEF) 9	protein-coding	0.040000	0.616915	
mm_123015.1	chr14	55106471	55106671	-	1	NA	NA	NA	22	NM_001303502	11766	Mm.238879	NM_007455	ENSMUSG00000040701	Ap1g2	Adtg2|G2ad	adaptor protein complex AP-1, gamma 2 subunit	protein-coding	0.035000	0.606965	
mm_52902.1	chr6	122761136	122761336	+	1	NA	NA	NA	-18491	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.045000	0.557214	
mm_61064.1	chr7	50599076	50599276	+	1	NA	NA	NA	-14	NM_172901	243996	Mm.443270	NM_172901	ENSMUSG00000084234	4933405O20Rik	-	RIKEN cDNA 4933405O20 gene	protein-coding	0.010000	0.393035	
mm_25565.1	chr3	116562976	116563176	+	1	NA	NA	NA	103	NM_175413	109245	Mm.216027	NM_027321	ENSMUSG00000027961	Lrrc39	2010005E21Rik|9430028I06Rik|Myomasp	leucine rich repeat containing 39	protein-coding	0.015000	0.457711	
mm_88367.1	chr10	75948213	75948413	+	1	NA	NA	NA	1	NM_009514	22364	Mm.333851	NM_009514	ENSMUSG00000000903	Vpreb3	8HS-20|AI528709|Vpreb-3	pre-B lymphocyte gene 3	protein-coding	0.015000	0.562189	
mm_103376.1	chr11	75348192	75348392	-	1	NA	NA	NA	91	NM_001164223	68275	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0.110000	0.691542	
mm_153125.1	chr19	34008262	34008462	-	1	NA	NA	NA	108	NM_001205349	240633	Mm.58924	NM_172837	ENSMUSG00000024771	Lipk	9930115F20|BC055815|Lipl2	lipase, family member K	protein-coding	0.020000	0.447761	-39(CCCTTAAAACAC,+,0.00)
mm_8464.1	chr1	153332611	153332811	-	1	NA	NA	NA	75	NM_010683	226519	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	0.130000	0.741294	
mm_20883.1	chr2	148850827	148851027	-	1	NA	NA	NA	7	NM_029960	77705	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	0.015000	0.497512	
mm_78683.1	chr9	40794450	40794650	+	1	NA	NA	NA	-6723	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.010000	0.482587	-23(CCTTTTCAAGAG,+,0.00),6(CACTCTAAAAGC,-,0.00)
mm_153483.1	chr19	41276941	41277141	-	1	NA	NA	NA	-13037	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.005000	0.487562	
mm_2116.1	chr1	87878073	87878273	+	1	NA	NA	NA	-23874	NR_136921	100503175	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.010000	0.432836	-60(TTCTATAAATAG,-,0.00)
mm_152088.1	chr19	6907607	6907807	-	1	NA	NA	NA	1938	NM_012021	54683	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.005000	0.547264	
mm_135774.1	chr16	56831771	56831971	-	1	NA	NA	NA	-36013	NM_172825	239853	Mm.258979	NM_172825	ENSMUSG00000022755	Adgrg7	9130020O16Rik|Gpr128	adhesion G protein-coupled receptor G7	protein-coding	0.025000	0.497512	
mm_62641.1	chr7	107664908	107665108	+	1	NA	NA	NA	58164	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.005000	0.527363	
mm_120281.1	chr14	63132398	63132598	+	1	NA	NA	NA	10036	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.477612	
mm_150187.1	chr19	32665456	32665656	+	1	NA	NA	NA	45551	NM_011864	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.030000	0.487562	
mm_153859.1	chr19	46503586	46503786	-	1	NA	NA	NA	2038	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.035000	0.547264	
mm_74239.1	chr8	124614100	124614300	+	1	NA	NA	NA	38089	NM_023709	73647	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	0.005000	0.497512	
mm_6927.1	chr1	84868131	84868331	-	1	NA	NA	NA	28390	NM_025386	66153	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.000000	0.343284	
mm_28012.1	chr3	83043369	83043569	-	1	NA	NA	NA	6394	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.020000	0.477612	
mm_161756.1	chr17	35141372	35141572	+	1	NA	NA	NA	5758	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.035000	0.562189	
mm_46255.1	chr5	99327003	99327203	-	1	NA	NA	NA	-74176	NM_145839	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.010000	0.487562	
mm_148493.1	chr19	4154554	4154754	+	1	NA	NA	NA	8	NM_016933	19265	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	0.020000	0.562189	
mm_100402.1	chr11	119393308	119393508	+	1	NA	NA	NA	2936	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.025000	0.497512	-43(CACTTTAAAAGA,-,0.00)
mm_69210.1	chr7	127449038	127449238	-	1	NA	NA	NA	20	NM_175163	71131	Mm.474533	NM_175163	ENSMUSG00000048921	Zfp689	4933416E05Rik|Znf689	zinc finger protein 689	protein-coding	0.060000	0.522388	
mm_151011.1	chr19	46707627	46707827	+	1	NA	NA	NA	284	NM_020577	57344	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	0.045000	0.611940	
mm_13986.1	chr2	121544342	121544542	+	1	NA	NA	NA	37719	NM_001290986	241627	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	0.000000	0.363184	
mm_137723.1	chr17	29142222	29142422	+	1	NA	NA	NA	7266	NM_001002786	442827	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	0.010000	0.517413	
mm_136649.1	chr17	5850693	5850893	+	1	NA	NA	NA	9413	NM_025664	66616	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0.005000	0.412935	
mm_71960.1	chr8	70527735	70527935	+	1	NA	NA	NA	-11	NM_001199631	14232	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|Fkbp38	FK506 binding protein 8	protein-coding	0.125000	0.781095	
mm_74979.1	chr8	27141474	27141674	-	1	NA	NA	NA	-1336	NR_045840	71082	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.005000	0.462687	
mm_104456.1	chr11	95041299	95041499	-	1	NA	NA	NA	-28	NM_133667	18604	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	0.110000	0.691542	
mm_171364.1	chr4	117367388	117367588	+	1	NA	NA	NA	7973	NM_001310729	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.055000	0.592040	
mm_155262.1	chrX	58019495	58019695	+	1	NA	NA	NA	-11033	NM_009575	22773	Mm.255890	NM_009575	ENSMUSG00000067860	Zic3	Bn|Ka	zinc finger protein of the cerebellum 3	protein-coding	0.035000	0.592040	
mm_51779.1	chr6	88193486	88193686	+	1	NA	NA	NA	-5078	NM_008090	14461	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.060000	0.681592	
mm_17851.1	chr2	34754248	34754448	-	1	NA	NA	NA	884	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.150000	0.766169	
mm_170280.1	chr18	27599127	27599327	+	1	NA	NA	NA	-960937	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.030000	0.487562	
mm_74364.1	chr8	128359264	128359464	+	1	NA	NA	NA	123	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.055000	0.547264	
mm_159322.1	chr3	15848343	15848543	-	1	NA	NA	NA	44	NM_001173459	100038947	Mm.330924	NM_001173459	ENSMUSG00000074677	LOC100038947	-	signal-regulatory protein beta 1-like	protein-coding	0.005000	0.437811	
mm_122435.1	chr14	45219152	45219352	-	1	NA	NA	NA	173	NM_172597	70561	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.050000	0.592040	
mm_27339.1	chr3	50412191	50412391	-	1	NA	NA	NA	31322	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.348259	
mm_115352.1	chr13	112763881	112764081	+	1	NA	NA	NA	-36796	NM_008903	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.015000	0.482587	-34(GTGTTTAAAAGG,-,0.00),-32(GTTTAAAAGGCC,+,0.00)
mm_79495.1	chr9	57095271	57095471	+	1	NA	NA	NA	18995	NM_011378	20466	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	0.010000	0.462687	-37(AGCTATTTAAAG,-,0.00),-35(CTATTTAAAGGC,+,0.00)
mm_25334.1	chr3	106573881	106574081	+	1	NA	NA	NA	-26179	NM_133869	99712	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.010000	0.318408	
mm_127007.1	chr15	95801371	95801571	+	1	NA	NA	NA	10628	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.030000	0.497512	-46(CCTTTAATAGAA,+,0.00)
mm_19747.1	chr2	104849374	104849574	-	1	NA	NA	NA	376	NM_178695	228413	Mm.259609	NM_178695	ENSMUSG00000027171	Prrg4	9930111I18Rik|TMG4	proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane)	protein-coding	0.085000	0.656716	
mm_55802.1	chr6	82804972	82805172	-	1	NA	NA	NA	-30618	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.005000	0.447761	
mm_121219.1	chr14	103054791	103054991	+	1	NA	NA	NA	7879	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.030000	0.572139	-43(GGCCTTTAAGAG,-,0.00),-42(GCCTTTAAGAGC,-,0.00),-41(CCTTTAAGAGCT,+,0.00)
mm_116087.1	chr13	28650043	28650243	-	1	NA	NA	NA	60730	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.000000	0.348259	
mm_115753.1	chr13	19188512	19188712	-	1	NA	NA	NA	207201	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.363184	
mm_33397.1	chr4	129820606	129820806	+	1	NA	NA	NA	-2	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.135000	0.771144	
mm_119048.1	chr14	30626550	30626750	+	1	NA	NA	NA	-442	NM_011103	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.035000	0.636816	
mm_15995.1	chr2	167062735	167062935	+	1	NA	NA	NA	-99	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.175000	0.840796	
mm_68399.1	chr7	109602531	109602731	-	1	NA	NA	NA	13937	NR_037617	76954	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.015000	0.517413	
mm_142245.1	chr17	37482921	37483121	-	1	NA	NA	NA	508	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.025000	0.517413	
mm_156295.1	chrX	136837473	136837673	+	1	NA	NA	NA	14827	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.398010	
mm_149371.1	chr19	11372565	11372765	+	1	NA	NA	NA	-2823	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.000000	0.388060	-64(CTTTTTAAATGC,+,0.00)
mm_130097.1	chr15	89425516	89425716	-	1	NA	NA	NA	246	NM_009948	12895	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	0.075000	0.686567	
mm_124063.1	chr14	78331951	78332151	-	1	NA	NA	NA	-24008	NM_011613	21943	Mm.249221	NM_011613	ENSMUSG00000022015	Tnfsf11	Ly109l|ODF|OPGL|RANKL|Trance	tumor necrosis factor (ligand) superfamily, member 11	protein-coding	0.005000	0.427861	
mm_93217.1	chr10	94961379	94961579	-	1	NA	NA	NA	-16901	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.025000	0.467662	
mm_48753.1	chr5	148012223	148012423	-	1	NA	NA	NA	55003	NM_029920	77521	Mm.244177	NM_029920	ENSMUSG00000029651	Mtus2	5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774	microtubule associated tumor suppressor candidate 2	protein-coding	0.020000	0.492537	
mm_166183.1	chr5	31713169	31713369	-	1	NA	NA	NA	15219	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.000000	0.407960	-21(CTCCATTAAAAG,-,0.00),-19(CCATTAAAAGGT,+,0.00)
mm_58023.1	chr6	136661700	136661900	-	1	NA	NA	NA	93	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.065000	0.631841	
mm_135522.1	chr16	48872882	48873082	-	1	NA	NA	NA	374	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.005000	0.427861	
mm_146862.1	chr18	24529991	24530191	-	1	NA	NA	NA	113	NM_144861	225283	Mm.28427	NM_144861	ENSMUSG00000040446	Rprd1a	C77387|mKIAA4077	regulation of nuclear pre-mRNA domain containing 1A	protein-coding	0.110000	0.701493	
mm_39777.1	chr5	30144137	30144337	+	1	NA	NA	NA	10743	NM_178878	97212	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	0.020000	0.467662	
mm_77218.1	chr8	115411820	115412020	-	1	NA	NA	NA	294974	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.015000	0.472637	
mm_44613.1	chr5	25498633	25498833	-	1	NA	NA	NA	50	NM_001081383	231051	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0.125000	0.746269	
mm_167312.1	chr8	61902639	61902839	-	1	NA	NA	NA	-45	NM_001293772	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.010000	0.507463	
mm_103088.1	chr11	69920428	69920628	-	1	NA	NA	NA	102	NM_001166590	276770	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.080000	0.686567	
mm_109966.1	chr12	12788574	12788774	-	1	NA	NA	NA	-118757	NR_136889	102637952	Mm.421393	NR_136889		Gm34637	-	predicted gene, 34637	ncRNA	0.030000	0.606965	
mm_133131.1	chr16	65828558	65828758	+	1	NA	NA	NA	13025	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.020000	0.467662	
mm_19358.1	chr2	91082891	91083091	-	1	NA	NA	NA	-12676	NM_001290765	68427	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.020000	0.606965	
mm_25932.1	chr3	131368875	131369075	+	1	NA	NA	NA	-24052	NM_028943	74442	Mm.273360	NM_028943	ENSMUSG00000050931	Sgms2	4933405A16Rik|5133401H06Rik|AI854299	sphingomyelin synthase 2	protein-coding	0.035000	0.437811	
mm_106452.1	chr11	120017009	120017209	-	1	NA	NA	NA	-2247	NR_029767	723844		NR_029767	ENSMUSG00000065600	Mir338	Mirn338|mir-338|mmu-mir-338	microRNA 338	ncRNA	0.015000	0.621891	
mm_173.1	chr1	13436392	13436592	+	1	NA	NA	NA	-62409	NM_008678	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.010000	0.487562	
mm_149476.1	chr19	11748367	11748567	+	1	NA	NA	NA	908	NM_008118	14603	Mm.456	NM_008118	ENSMUSG00000024682	Gif	AV073125	gastric intrinsic factor	protein-coding	0.030000	0.542289	
mm_45503.1	chr5	72417623	72417823	-	1	NA	NA	NA	86485	NM_016869	53419	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.005000	0.452736	
mm_50287.1	chr6	47453873	47454073	+	1	NA	NA	NA	-351	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.135000	0.701493	
mm_2.1	chr1	3873123	3873323	+	1	NA	NA	NA	-201725	NM_001011874	497097	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.000000	0.447761	
mm_19950.1	chr2	117319513	117319713	-	1	NA	NA	NA	23264	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.015000	0.477612	
mm_81494.1	chr9	110027648	110027848	+	1	NA	NA	NA	-24273	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.035000	0.437811	
mm_32000.1	chr4	94603171	94603371	+	1	NA	NA	NA	-24	NM_172695	18786	Mm.490101	NM_172695	ENSMUSG00000028577	Plaa	2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3	phospholipase A2, activating protein	protein-coding	0.115000	0.661692	
mm_151289.1	chr19	55315575	55315775	+	1	NA	NA	NA	357	NM_025883	66980	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369	zinc finger, DHHC domain containing 6	protein-coding	0.085000	0.582090	
mm_40667.1	chr5	65391483	65391683	+	1	NA	NA	NA	86	NM_001310612	79464	Mm.195776	NM_024471	ENSMUSG00000029199	Lias	2900022L22Rik|4933425M12Rik|7a5ex|C77512|LS|lip-syn	lipoic acid synthetase	protein-coding	0.120000	0.636816	
mm_155411.1	chrX	73483484	73483684	+	1	NA	NA	NA	-17	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.045000	0.691542	
mm_30573.1	chr4	3834371	3834571	+	1	NA	NA	NA	1184	NM_026147	67427	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.010000	0.378109	
mm_42742.1	chr5	120711682	120711882	+	1	NA	NA	NA	-113	NM_008052	14357	Mm.1645	NM_008052	ENSMUSG00000029603	Dtx1	Fxit1|mKIAA4160	deltex 1, E3 ubiquitin ligase	protein-coding	0.065000	0.592040	
mm_107735.1	chr12	57564031	57564231	+	1	NA	NA	NA	16	NM_001312644	70846	Mm.84118	NM_001037743	ENSMUSG00000046782	Ttc6	4921506M07Rik|EG639426|ENSMUSG00000046782|Gm69|Gm9813	tetratricopeptide repeat domain 6	protein-coding	0.025000	0.567164	
mm_28376.1	chr3	89960449	89960649	-	1	NA	NA	NA	2783	NM_001081182	54667	Mm.30455	NM_001081182	ENSMUSG00000060671	Atp8b2	Id	ATPase, class I, type 8B, member 2	protein-coding	0.080000	0.731343	
mm_56906.1	chr6	119196522	119196722	-	1	NA	NA	NA	-213	NM_001255999	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.025000	0.542289	
mm_137099.1	chr17	21566962	21567162	+	1	NA	NA	NA	16	NM_001002008	381066	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	0.060000	0.611940	
mm_116699.1	chr13	49904529	49904729	-	1	NA	NA	NA	222499	NM_172015	105148	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	0.000000	0.492537	-34(CTCTTTAAAAGT,-,0.00),-33(TCTTTAAAAGTC,+,0.00)
mm_121541.1	chr14	122474316	122474516	+	1	NA	NA	NA	783	NR_045046	69248	Mm.235369	NR_045046	ENSMUSG00000085555	2610035F20Rik	-	RIKEN cDNA 2610035F20 gene	ncRNA	0.075000	0.611940	
mm_161937.1	chr19	3389487	3389687	+	1	NA	NA	NA	209	NM_001286558	17771	Mm.209941	NM_010841	ENSMUSG00000024905	Mtl5	tesmin	metallothionein-like 5, testis-specific (tesmin)	protein-coding	0.010000	0.487562	
mm_98979.1	chr11	98740502	98740702	+	1	NA	NA	NA	-1183	NM_178060	21833	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.025000	0.587065	
mm_19202.1	chr2	84499447	84499647	-	1	NA	NA	NA	7326	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	0.005000	0.412935	
mm_26271.1	chr3	142503760	142503960	+	1	NA	NA	NA	6926	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.000000	0.452736	
mm_14388.1	chr2	129800389	129800589	+	1	NA	NA	NA	-28	NM_183262	67333	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	0.105000	0.671642	
mm_159332.1	chr3	40855188	40855388	-	1	NA	NA	NA	-3	NR_045392	100039043	Mm.460823	NM_001129886		Gm10731	ENSMUSG00000074620	FUN14 domain containing 2 pseudogene	pseudo	0.060000	0.552239	
mm_99046.1	chr11	99041146	99041346	+	1	NA	NA	NA	-14	NM_010517	16010	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.090000	0.746269	
mm_168388.1	chr1	125435321	125435521	-	1	NA	NA	NA	306	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.085000	0.701493	
mm_47308.1	chr5	122456844	122457044	-	1	NA	NA	NA	34500	NM_019805	56317	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0.005000	0.318408	-36(TTTTTTATACAC,+,0.00)
mm_81799.1	chr9	115908385	115908585	+	1	NA	NA	NA	-970	NM_028638	73748	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	0.060000	0.666667	
mm_70490.1	chr8	12457153	12457353	+	1	NA	NA	NA	61734	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.025000	0.562189	
mm_106294.1	chr11	118212737	118212937	-	1	NA	NA	NA	-95	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.005000	0.577114	
mm_139118.1	chr17	47436505	47436705	+	1	NA	NA	NA	-34	NM_145489	224833	Mm.218444	NM_145489	ENSMUSG00000034382	AI661453	-	expressed sequence AI661453	protein-coding	0.115000	0.736318	
mm_69746.1	chr7	140955606	140955806	-	1	NA	NA	NA	255	NM_030694	80876	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.025000	0.562189	
mm_52042.1	chr6	96377712	96377912	+	1	NA	NA	NA	-211607	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo	0.005000	0.323383	
mm_89500.1	chr10	94035950	94036150	+	1	NA	NA	NA	49	NM_053072	13998	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	0.160000	0.711443	
mm_31027.1	chr4	40853275	40853475	+	1	NA	NA	NA	1162	NM_022305	14595	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0.030000	0.547264	
mm_92217.1	chr10	68250342	68250542	-	1	NA	NA	NA	28284	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.005000	0.343284	
mm_147746.1	chr18	61176882	61177082	-	1	NA	NA	NA	67	NM_178277	106894	Mm.22574	NM_134134	ENSMUSG00000024622	Hmgxb3	2510002C16Rik|A630042L21Rik|AI413166|mKIAA0194	HMG box domain containing 3	protein-coding	0.140000	0.736318	
mm_47808.1	chr5	133790700	133790900	-	1	NA	NA	NA	-308948	NM_030719	80909	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding	0.010000	0.452736	
mm_48076.1	chr5	136696107	136696307	-	1	NA	NA	NA	2030	NM_001085387	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.005000	0.522388	
mm_117986.1	chr13	100202019	100202219	-	1	NA	NA	NA	3	NM_001126182	17948	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0.000000	0.532338	-77(TCCTTTAAGAGG,-,0.00),-76(CCTTTAAGAGGT,+,0.00)
mm_159112.1	chr2	54436811	54437011	+	1	NA	NA	NA	524	NM_173030	271786	Mm.330227	NM_173030	ENSMUSG00000060988	Galnt13	A230002A12|A230020F20|BB182356	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	protein-coding	0.095000	0.716418	
mm_7838.1	chr1	132226070	132226270	-	1	NA	NA	NA	-144	NM_001311102	213409	Mm.426321	NM_001033250	ENSMUSG00000079330	Lemd1	4930540I23Rik|6430514M23Rik|AI428128|LEMP-1	LEM domain containing 1	protein-coding	0.020000	0.487562	
mm_173221.1	chrX	74726243	74726443	+	1	NA	NA	NA	-14584	NM_001099306	628518	Mm.465110	NM_001099306	ENSMUSG00000079532	Gm6890	EG628518	predicted gene 6890	protein-coding	0.035000	0.537313	
mm_94788.1	chr11	22607926	22608126	+	1	NA	NA	NA	95743	NM_153596	103765	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.025000	0.477612	50(GCTTATATGGCG,+,0.00)
mm_90160.1	chr10	118869869	118870069	+	1	NA	NA	NA	-1066	NM_001014390	69181	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.040000	0.537313	
mm_155869.1	chrX	101384399	101384599	+	1	NA	NA	NA	767	NM_001302497	14618	Mm.21198	NM_008124	ENSMUSG00000047797	Gjb1	Cnx32|Cx32|connexin-32	gap junction protein, beta 1	protein-coding	0.020000	0.542289	
mm_136091.1	chr16	85024809	85025009	-	1	NA	NA	NA	52698	NR_045889	100038614	Mm.441351	NR_045889		Gm10791	ENSMUSG00000074933	predicted gene 10791	ncRNA	0.025000	0.517413	
mm_128812.1	chr15	67101932	67102132	-	1	NA	NA	NA	74850	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.015000	0.462687	
mm_94677.1	chr11	17913582	17913782	+	1	NA	NA	NA	40193	NM_026576	68145	Mm.178684	NM_026576	ENSMUSG00000016984	Etaa1	5730466H23Rik|AA672646	Ewing tumor-associated antigen 1	protein-coding	0.000000	0.333333	
mm_47492.1	chr5	124006383	124006583	-	1	NA	NA	NA	9631	NR_105999	102465625		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.050000	0.681592	
mm_87129.1	chr10	34282086	34282286	+	1	NA	NA	NA	-4	NM_009433	22110	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.080000	0.597015	
mm_163402.1	chr12	74093228	74093428	+	1	NA	NA	NA	95567	NM_172804	238266	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding	0.020000	0.522388	
mm_109233.1	chr12	108851026	108851226	+	1	NA	NA	NA	-3	NM_001012310	104910	Mm.202653	NM_001012310	ENSMUSG00000048856	Slc25a47	AI132487|AI876593|HDMCP	solute carrier family 25, member 47	protein-coding	0.015000	0.497512	
mm_171246.1	chr3	77615272	77615472	-	1	NA	NA	NA	1529515	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.005000	0.238806	
mm_124598.1	chr15	3275529	3275729	+	1	NA	NA	NA	4652	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.010000	0.368159	40(TCTTAAAAAGCA,+,0.00)
mm_158980.1	chr1	125911028	125911228	-	1	NA	NA	NA	259	NM_001311090	72585	Mm.490405	NM_145100	ENSMUSG00000026344	Lypd1	2700050C12Rik|AI853408|C530008O16Rik|Lynx2|Lypdc1	Ly6/Plaur domain containing 1	protein-coding	0.020000	0.592040	-88(AGGTCTAAAAGG,-,0.00)
mm_101873.1	chr11	48892030	48892230	-	1	NA	NA	NA	10022	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.005000	0.398010	
mm_28532.1	chr3	92670215	92670415	-	1	NA	NA	NA	0	NM_028625	73722	Mm.279773	NM_028625	ENSMUSG00000068890	Lce1a2	1110004E04Rik|Sprrl2	late cornified envelope 1A2	protein-coding	0.000000	0.522388	
mm_98501.1	chr11	94951910	94952110	+	1	NA	NA	NA	-15583	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.000000	0.502488	
mm_90871.1	chr10	8945152	8945352	-	1	NA	NA	NA	-59182	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.030000	0.497512	
mm_42071.1	chr5	110100320	110100520	+	1	NA	NA	NA	-139	NM_001281812	403178	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0.065000	0.636816	
mm_57581.1	chr6	127150905	127151105	-	1	NA	NA	NA	43	NM_009829	12444	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.050000	0.621891	
mm_68683.1	chr7	119184437	119184637	-	1	NA	NA	NA	-163	NM_001024138	209776	Mm.300632	NM_001024138	ENSMUSG00000066197	Gpr139	GPRg1|Gm495|PGR3	G protein-coupled receptor 139	protein-coding	0.075000	0.691542	
mm_7709.1	chr1	130452424	130452624	-	1	NA	NA	NA	10220	NM_010016	13136	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0.010000	0.368159	
mm_8525.1	chr1	154884283	154884483	-	1	NA	NA	NA	-158463	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.060000	0.606965	
mm_26676.1	chr3	155093345	155093545	+	1	NA	NA	NA	11	NM_028938	74435	Mm.195711	NM_028938	ENSMUSG00000028182	Lrriq3	4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44	leucine-rich repeats and IQ motif containing 3	protein-coding	0.105000	0.681592	27(GACTTGAAAAGC,-,0.00)
mm_125655.1	chr15	63476102	63476302	+	1	NA	NA	NA	3406	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA	0.005000	0.273632	
mm_51820.1	chr6	89096009	89096209	+	1	NA	NA	NA	-1	NR_134978	232217	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	0.050000	0.532338	
mm_151162.1	chr19	53194287	53194487	+	1	NA	NA	NA	50390	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.020000	0.462687	
mm_47589.1	chr5	124861888	124862088	-	1	NA	NA	NA	233	NM_144819	215707	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.150000	0.786070	
mm_141936.1	chr17	35046650	35046850	-	1	NA	NA	NA	-5	NM_001146215	17687	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	0.100000	0.656716	
mm_145279.1	chr18	53176205	53176405	+	1	NA	NA	NA	-60	NM_026386	67804	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.125000	0.786070	
mm_167893.1	chrX	69853532	69853732	+	1	NA	NA	NA	-91649	NM_029316	75509	Mm.233475	NM_029316	ENSMUSG00000059690	1700020N15Rik	-	RIKEN cDNA 1700020N15 gene	protein-coding	0.010000	0.467662	
mm_128869.1	chr15	72925532	72925732	-	1	NA	NA	NA	-115308	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.015000	0.542289	
mm_10553.1	chr2	16751103	16751303	+	1	NA	NA	NA	262523	NR_040632	75069	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	0.010000	0.422886	
mm_33690.1	chr4	133443226	133443426	+	1	NA	NA	NA	-36807	NM_175307	100342	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	0.010000	0.616915	
mm_91028.1	chr10	17944252	17944452	-	1	NA	NA	NA	3715	NM_001033432	380629	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.010000	0.368159	-53(CATTCTAAAAGG,-,0.00)
mm_118843.1	chr14	25656824	25657024	+	1	NA	NA	NA	-37246	NM_134084	105675	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.035000	0.616915	
mm_133781.1	chr16	94984358	94984558	+	1	NA	NA	NA	13238	NM_001025584	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.005000	0.442786	
mm_47860.1	chr5	134607217	134607417	-	1	NA	NA	NA	7708	NM_022964	56743	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0.015000	0.567164	
mm_2752.1	chr1	128747590	128747790	+	1	NA	NA	NA	-155391	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.025000	0.527363	
mm_10315.1	chr2	11172304	11172504	+	1	NA	NA	NA	22	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.125000	0.726368	
mm_64745.1	chr7	4771235	4771435	-	1	NA	NA	NA	-65	NM_172895	243822	Mm.333542	NM_172895	ENSMUSG00000092518	Fam71e2	4930401F20Rik	family with sequence similarity 71, member E2	protein-coding	0.010000	0.577114	
mm_158730.1	chrX	163958494	163958694	-	1	NA	NA	NA	72	NM_009453	22184	Mm.426178	NM_009453	ENSMUSG00000031370	Zrsr2	35kDa|5031411E02Rik|A230052C13Rik|C77286|U2af1-rs2|URP	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	protein-coding	0.085000	0.661692	
mm_110906.1	chr12	75745679	75745879	-	1	NA	NA	NA	-10050	NM_030750	81535	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.030000	0.412935	-35(TTCTCTAAAAGA,-,0.00)
mm_151651.1	chr19	4069132	4069332	-	1	NA	NA	NA	-9938	NM_144869	225884	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.025000	0.497512	
mm_135979.1	chr16	75052093	75052293	-	1	NA	NA	NA	533868	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.010000	0.343284	6(CCTTTACTGGAC,+,0.00)
mm_56987.1	chr6	120531209	120531409	-	1	NA	NA	NA	-10	NM_144815	214932	Mm.255322	NM_144815	ENSMUSG00000058979	Cecr5	A930002G03Rik	cat eye syndrome chromosome region, candidate 5	protein-coding	0.130000	0.726368	
mm_129462.1	chr15	78573122	78573322	-	1	NA	NA	NA	-439	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.010000	0.582090	
mm_21496.1	chr2	163416995	163417195	-	1	NA	NA	NA	2375	NM_025699	66680	Mm.25119	NM_025699	ENSMUSG00000035399	Oser1	3230401D17Rik|AI256769|Perit1	oxidative stress responsive serine rich 1	protein-coding	0.000000	0.447761	
mm_125261.1	chr15	35371157	35371357	+	1	NA	NA	NA	-289	NM_177151	666173	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0.095000	0.616915	
mm_158653.1	chrX	155623713	155623913	-	1	NA	NA	NA	-486	NM_001093750	211612	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	0.080000	0.676617	
mm_36144.1	chr4	59474698	59474898	-	1	NA	NA	NA	-36165	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.000000	0.353234	
mm_95477.1	chr11	51220473	51220673	+	1	NA	NA	NA	-155	NR_110444	71297	Mm.390420	NR_110444	ENSMUSG00000086646	Platr20	5133400J02Rik	pluripotency associated transcript 20	ncRNA	0.015000	0.477612	
mm_34181.1	chr4	140700378	140700578	+	1	NA	NA	NA	-995	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.035000	0.532338	
mm_154409.1	chrM	14616	14816	+	1	NA	NA	NA	NA	NA									0.035000	0.447761	
mm_64507.1	chr7	143626282	143626482	+	1	NA	NA	NA	1463	NM_175649	244237	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	0.005000	0.402985	
mm_26017.1	chr3	135438192	135438392	+	1	NA	NA	NA	373	NR_030689	319587	Mm.358971	NR_030689	ENSMUSG00000097032	4930539J05Rik	8030475D13Rik	RIKEN cDNA 4930539J05 gene	ncRNA	0.075000	0.661692	
mm_6500.1	chr1	74284574	74284774	-	1	NA	NA	NA	64	NM_146110	227290	Mm.379371	NM_146110	ENSMUSG00000006299	Aamp	AU040907|Aamp-rs	angio-associated migratory protein	protein-coding	0.120000	0.671642	
mm_155581.1	chrX	78369554	78369754	+	1	NA	NA	NA	11	NM_001177966	74910	Mm.159364	NM_001177966	ENSMUSG00000035651	4930480E11Rik	-	RIKEN cDNA 4930480E11 gene	protein-coding	0.005000	0.442786	
mm_123831.1	chr14	70627131	70627331	-	1	NA	NA	NA	-166	NM_001252663	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.045000	0.567164	
mm_131704.1	chr16	20718029	20718229	+	1	NA	NA	NA	303	NM_145632	245841	Mm.288730	NM_145632	ENSMUSG00000021018	Polr2h	-	polymerase (RNA) II (DNA directed) polypeptide H	protein-coding	0.025000	0.527363	
mm_156293.1	chrX	136837424	136837624	+	1	NA	NA	NA	14778	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.368159	
mm_90940.1	chr10	12929771	12929971	-	1	NA	NA	NA	-6744	NR_038028	320273	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	0.020000	0.507463	
mm_79957.1	chr9	66144925	66145125	+	1	NA	NA	NA	-13201	NM_010019	13143	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	0.000000	0.512438	
mm_159151.1	chr2	88391372	88391572	+	1	NA	NA	NA	223	NM_001011868	258203	Mm.376126	NM_001011868	ENSMUSG00000056995	Olfr1178	MOR225-6P	olfactory receptor 1178	protein-coding	0.015000	0.412935	
mm_166382.1	chr5	131095691	131095891	-	1	NA	NA	NA	211731	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.005000	0.482587	
mm_168110.1	chr10	14746335	14746535	-	1	NA	NA	NA	-13854	NM_008703	18101	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.055000	0.567164	-11(CTCTCTATGAGG,-,0.00)
mm_24981.1	chr3	96830031	96830231	+	1	NA	NA	NA	66	NM_021517	59020	Mm.489677	NM_021517	ENSMUSG00000038298	Pdzk1	1700023D20Rik|2610507N21Rik|4921513F16Rik|AI267131|AI314638|AL022680|D3Ertd537e|Pdzd1|mPDZK1	PDZ domain containing 1	protein-coding	0.035000	0.517413	-73(GCTTTTAAATCA,+,0.00)
mm_157689.1	chrX	60179061	60179261	-	1	NA	NA	NA	-72	NM_001289731	109904	Mm.93796	NM_133197	ENSMUSG00000031139	Mcf2	B230117G22Rik|Dbl|Mcf-2	mcf.2 transforming sequence	protein-coding	0.030000	0.582090	
mm_144694.1	chr18	34861108	34861308	+	1	NA	NA	NA	1	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.125000	0.686567	-86(TCCCATATATGG,-,0.00),-84(CCATATATGGCC,+,0.00)
mm_148279.1	chr18	82332249	82332449	-	1	NA	NA	NA	74428	NM_008082	14427	Mm.6219	NM_008082	ENSMUSG00000024553	Galr1	Galnr1	galanin receptor 1	protein-coding	0.000000	0.512438	
mm_142536.1	chr17	46546204	46546404	-	1	NA	NA	NA	84	NM_001081335	78309	Mm.329076	NM_001081335	ENSMUSG00000040327	Cul9	1810035I07Rik|Cul-9|Parc|mKIAA0708	cullin 9	protein-coding	0.095000	0.676617	
mm_105011.1	chr11	100411791	100411991	-	1	NA	NA	NA	2928	NM_176830	66180	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	0.020000	0.562189	-34(TGCCTTTAAAGG,-,0.00),-33(GCCTTTAAAGGA,+,0.00),-33(GCCTTTAAAGGA,-,0.00),-32(CCTTTAAAGGAA,+,0.00)
mm_30136.1	chr3	142249457	142249657	-	1	NA	NA	NA	-80329	NM_001277216	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.005000	0.482587	
mm_109608.1	chr12	112722101	112722301	+	1	NA	NA	NA	27	NM_001024602	217882	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0.180000	0.830846	
mm_172815.1	chr9	123689656	123689856	-	1	NA	NA	NA	-10924	NM_139142	102680	Mm.440867	NM_139142	ENSMUSG00000036814	Slc6a20a	A730081N20Rik|AU022428|Xt3s1|Xtrp3s1	solute carrier family 6 (neurotransmitter transporter), member 20A	protein-coding	0.005000	0.388060	
mm_132604.1	chr16	38562741	38562941	+	1	NA	NA	NA	27	NM_026407	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.085000	0.661692	
mm_77010.1	chr8	107581108	107581308	-	1	NA	NA	NA	7274	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.025000	0.567164	
mm_156669.1	chrX	159210386	159210586	+	1	NA	NA	NA	-45296	NM_148945	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	0.020000	0.472637	
mm_61516.1	chr7	78913342	78913542	+	1	NA	NA	NA	18	NM_001291220	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.000000	0.512438	
mm_135169.1	chr16	35930929	35931129	-	1	NA	NA	NA	-7441	NM_030253	80285	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.010000	0.477612	
mm_139450.1	chr17	55749885	55750085	+	1	NA	NA	NA	1	NM_139138	52614	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0.005000	0.422886	
mm_160255.1	chr7	107902686	107902886	+	1	NA	NA	NA	67	NM_146774	258770	Mm.389960	NM_146774	ENSMUSG00000073893	Olfr472	MOR204-5	olfactory receptor 472	protein-coding	0.000000	0.383085	
mm_161768.1	chr17	36368128	36368328	-	1	NA	NA	NA	189	NM_201608	110696	Mm.303091	NM_201608	ENSMUSG00000058124	H2-M10.3	5.3H	histocompatibility 2, M region locus 10.3	protein-coding	0.015000	0.547264	
mm_167147.1	chr7	128694145	128694345	+	1	NA	NA	NA	5375	NM_001346517	101490	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0.010000	0.348259	
mm_17893.1	chr2	35061339	35061539	-	1	NA	NA	NA	2	NM_010406	15139	Mm.2168	NM_010406	ENSMUSG00000026874	Hc	C5|C5a|He	hemolytic complement	protein-coding	0.010000	0.373134	-5(TTATTTAAAAGG,-,0.00)
mm_66271.1	chr7	37319944	37320144	-	1	NA	NA	NA	449708	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.010000	0.333333	
mm_152030.1	chr19	6084585	6084785	-	1	NA	NA	NA	206	NM_024231	81909	Mm.289471	NM_024231	ENSMUSG00000024792	Zfpl1	1500015B20Rik	zinc finger like protein 1	protein-coding	0.040000	0.577114	
mm_82899.1	chr9	32706239	32706439	-	1	NA	NA	NA	10297	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.030000	0.577114	
mm_90630.1	chr10	128469183	128469383	+	1	NA	NA	NA	10047	NM_001114097	68094	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	0.025000	0.542289	
mm_3785.1	chr1	156838808	156839008	+	1	NA	NA	NA	-115	NM_028333	72713	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	0.030000	0.527363	
mm_56924.1	chr6	119417511	119417711	-	1	NA	NA	NA	-128	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.045000	0.532338	
mm_67279.1	chr7	78577700	78577900	-	1	NA	NA	NA	38	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	0.025000	0.597015	
mm_20639.1	chr2	132021057	132021257	-	1	NA	NA	NA	8831	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.015000	0.606965	
mm_140009.1	chr17	73157308	73157508	+	1	NA	NA	NA	49423	NM_001177967	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.025000	0.417910	-34(GTATATAAAAAG,-,0.00)
mm_143904.1	chr17	84879081	84879281	-	1	NA	NA	NA	-77560	NM_001159497	19043	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.030000	0.407960	-44(CTTTTTAAAAAC,+,0.00)
mm_67207.1	chr7	74303172	74303372	-	1	NA	NA	NA	251508	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.015000	0.567164	-55(CAGTTTAAATGG,-,0.00)
mm_62006.1	chr7	91262224	91262424	+	1	NA	NA	NA	171538	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.050000	0.611940	
mm_94041.1	chr10	128146385	128146585	-	1	NA	NA	NA	30083	NM_019711	56516	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.005000	0.577114	
mm_33421.1	chr4	129985026	129985226	+	1	NA	NA	NA	48	NM_173071	230775	Mm.262241	NM_173071	ENSMUSG00000028782	Adgrb2	Bai2	adhesion G protein-coupled receptor B2	protein-coding	0.190000	0.870647	
mm_43597.1	chr5	137787688	137787888	+	1	NA	NA	NA	-14	NM_001005426	381678	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	0.095000	0.592040	
mm_36512.1	chr4	83525201	83525401	-	1	NA	NA	NA	-244	NM_001081012	320226	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	0.110000	0.671642	
mm_81103.1	chr9	106447667	106447867	+	1	NA	NA	NA	-89	NM_001110272	68644	Mm.268925	NM_145919	ENSMUSG00000042210	Abhd14a	1110013B16Rik|AW558221|Dorz1	abhydrolase domain containing 14A	protein-coding	0.045000	0.547264	
mm_141724.1	chr17	34115436	34115636	-	1	NA	NA	NA	4364	NR_037970	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.005000	0.482587	
mm_135132.1	chr16	35844140	35844340	-	1	NA	NA	NA	27142	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.015000	0.487562	10(GGCTCTTAAGGC,-,0.00)
mm_137475.1	chr17	26766470	26766670	+	1	NA	NA	NA	-14509	NM_172149	224630	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	0.000000	0.412935	
mm_133979.1	chr16	4541672	4541872	-	1	NA	NA	NA	17948	NM_031182	83383	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.110000	0.636816	
mm_19419.1	chr2	91930829	91931029	-	1	NA	NA	NA	773	NM_001291481	17242	Mm.906	NM_010784	ENSMUSG00000027239	Mdk	MK|Mek	midkine	protein-coding	0.040000	0.606965	
mm_34671.1	chr4	150927217	150927417	+	1	NA	NA	NA	-682	NM_001077509	21942	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.020000	0.517413	
mm_118489.1	chr14	12284157	12284357	+	1	NA	NA	NA	54	NM_001284386	218734	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	0.060000	0.611940	
mm_48265.1	chr5	137897858	137898058	-	1	NA	NA	NA	23661	NM_007819	13113	Mm.289886	NM_007819	ENSMUSG00000029727	Cyp3a13	IIIAm2	cytochrome P450, family 3, subfamily a, polypeptide 13	protein-coding	0.005000	0.338308	
mm_98025.1	chr11	85171001	85171201	+	1	NA	NA	NA	5	NM_028589	73634	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0.005000	0.562189	
mm_153692.1	chr19	44397082	44397282	-	1	NA	NA	NA	10527	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.457711	
mm_16309.1	chr2	174295522	174295722	+	1	NA	NA	NA	-186	NR_002846	56802	Mm.125770	NR_002846	ENSMUSG00000086537	Nespas	Gnas-as|Nespos	neuroendocrine secretory protein antisense	ncRNA	0.035000	0.537313	
mm_70340.1	chr8	4613037	4613237	+	1	NA	NA	NA	-33	NM_145591	233987	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.040000	0.532338	
mm_51879.1	chr6	90570750	90570950	+	1	NA	NA	NA	20002	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.035000	0.567164	
mm_5916.1	chr1	55052510	55052710	-	1	NA	NA	NA	-160	NM_026424	67876	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	0.095000	0.631841	
mm_162496.1	chr1	137966698	137966898	+	1	NA	NA	NA	159	NR_029820	723890		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA	0.030000	0.402985	
mm_91302.1	chr10	24916326	24916526	-	1	NA	NA	NA	5762	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.015000	0.417910	-43(TCTTTTATAGCT,+,0.00)
mm_107928.1	chr12	71137059	71137259	+	1	NA	NA	NA	311	NM_001163378	76967	Mm.87290	NM_029818	ENSMUSG00000034601	2700049A03Rik	Ta3|Talpid3|mKIAA0586	RIKEN cDNA 2700049A03 gene	protein-coding	0.085000	0.567164	
mm_2980.1	chr1	133130783	133130983	+	1	NA	NA	NA	-283	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.040000	0.447761	13(CCCTTAATAGGA,+,0.00)
mm_116573.1	chr13	47100136	47100336	-	1	NA	NA	NA	5985	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.020000	0.353234	31(CAGTATAAAAAG,-,0.00)
mm_157525.1	chrX	50943513	50943713	-	1	NA	NA	NA	-903	NM_001190332	385354	Mm.393050	NM_001190332	ENSMUSG00000036131	Frmd7	EG665849|Gm1533	FERM domain containing 7	protein-coding	0.005000	0.432836	
mm_79302.1	chr9	51914353	51914553	+	1	NA	NA	NA	24	NR_040731	74072	Mm.84915	NR_040731	ENSMUSG00000111836	4933407I05Rik	-	RIKEN cDNA 4933407I05 gene	ncRNA	0.025000	0.552239	
mm_140917.1	chr17	24170692	24170892	-	1	NA	NA	NA	-1363	NM_009729	11984	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0.015000	0.517413	47(CAGTTTAAAGGG,-,0.00)
mm_145313.1	chr18	53921999	53922199	+	1	NA	NA	NA	59986	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.005000	0.477612	
mm_115948.1	chr13	23728978	23729178	-	1	NA	NA	NA	-9729	NM_015786	50708	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	0.025000	0.547264	
mm_43598.1	chr5	137787728	137787928	+	1	NA	NA	NA	26	NM_001005426	381678	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	0.100000	0.616915	
mm_149301.1	chr19	10712834	10713034	+	1	NA	NA	NA	24119	NM_181403	107305	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.010000	0.641791	
mm_23035.1	chr3	34684218	34684418	+	1	NA	NA	NA	32344	NR_038347	100041108	Mm.24764	NR_038347	ENSMUSG00000105153	Gm3143	-	predicted gene 3143	ncRNA	0.005000	0.452736	
mm_162108.1	chrX	49886162	49886362	-	1	NA	NA	NA	139	NM_001011794	257978	Mm.377321	NM_001011794	ENSMUSG00000056281	Olfr1322	MOR264-16P	olfactory receptor 1322	protein-coding	0.005000	0.432836	
mm_168193.1	chr10	62980211	62980411	+	1	NA	NA	NA	88	NM_027425	70432	Mm.234587	NM_027425	ENSMUSG00000020070	Rufy2	2610111M19Rik|AI844453|Denn|LZ-FYVE|ZFYVE13	RUN and FYVE domain-containing 2	protein-coding	0.135000	0.771144	
mm_150863.1	chr19	45017596	45017796	+	1	NA	NA	NA	-439	NM_001130526	226154	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.060000	0.621891	
mm_129842.1	chr15	83154576	83154776	-	1	NA	NA	NA	5031	NR_004432	104307	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.015000	0.562189	
mm_24531.1	chr3	93277571	93277771	+	1	NA	NA	NA	-42078	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.005000	0.407960	
mm_147313.1	chr18	41951110	41951310	-	1	NA	NA	NA	-16	NM_029942	77619	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	0.055000	0.582090	
mm_168606.1	chr11	75348252	75348452	-	1	NA	NA	NA	31	NM_001164223	68275	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0.125000	0.696517	
mm_147973.1	chr18	67288846	67289046	-	1	NA	NA	NA	-277	NM_053261	114663	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0.055000	0.651741	
mm_23247.1	chr3	51224422	51224622	+	1	NA	NA	NA	75	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.090000	0.651741	
mm_155939.1	chrX	104017308	104017508	+	1	NA	NA	NA	-36124	NM_011276	19820	Mm.427762	NM_011276	ENSMUSG00000056537	Rlim	AL022832|AW743871|Ha1r|Rlim1|Rnf12	ring finger protein, LIM domain interacting	protein-coding	0.005000	0.462687	
mm_138720.1	chr17	36869456	36869656	+	1	NA	NA	NA	-18	NM_011280	19824	Mm.299155	NM_011280	ENSMUSG00000073400	Trim10	AI324236|BB139825|Herf1|Rnf9	tripartite motif-containing 10	protein-coding	0.005000	0.522388	
mm_89944.1	chr10	111280250	111280450	+	1	NA	NA	NA	-18329	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.020000	0.358209	
mm_128143.1	chr15	31530884	31531084	-	1	NA	NA	NA	53	NM_172606	223455	Mm.272185	NM_172606	ENSMUSG00000039100	March6	3830408G03|F830029L24Rik|mKIAA0597	membrane-associated ring finger (C3HC4) 6	protein-coding	0.155000	0.776119	
mm_81268.1	chr9	108080327	108080527	+	1	NA	NA	NA	-9	NM_008243	15235	Mm.8369	NM_008243	ENSMUSG00000032591	Mst1	D3F15S2h|D9H3F15S2|DNF15S2h|Hgfl	macrophage stimulating 1 (hepatocyte growth factor-like)	protein-coding	0.010000	0.572139	
mm_95073.1	chr11	32614666	32614866	+	1	NA	NA	NA	-27789	NM_001271348	103583	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.100000	0.661692	
mm_25814.1	chr3	127791026	127791226	+	1	NA	NA	NA	1213	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.030000	0.442786	
mm_128466.1	chr15	50816773	50816973	-	1	NA	NA	NA	72176	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.015000	0.313433	
mm_143798.1	chr17	83057876	83058076	-	1	NA	NA	NA	20249	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0.000000	0.487562	
mm_69772.1	chr7	141016724	141016924	-	1	NA	NA	NA	68	NM_001033632	213002	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.005000	0.462687	
mm_88997.1	chr10	81575189	81575389	+	1	NA	NA	NA	2	NM_001252401	21886	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0.110000	0.771144	
mm_77633.1	chr8	124080743	124080943	-	1	NA	NA	NA	57370	NM_001029876	382038	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	0.020000	0.562189	
mm_141322.1	chr17	28437956	28438156	-	1	NA	NA	NA	48093	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.005000	0.412935	
mm_23565.1	chr3	63295373	63295573	+	1	NA	NA	NA	38	NM_001289462	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.075000	0.671642	
mm_151491.1	chr19	58680648	58680848	+	1	NA	NA	NA	10383	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.010000	0.373134	
mm_35772.1	chr4	46396767	46396967	-	1	NA	NA	NA	7316	NM_053149	93966	Mm.25793	NM_053149	ENSMUSG00000028332	Hemgn	4921524M03Rik|AI317176|EDAG|Hgn|mNDR	hemogen	protein-coding	0.005000	0.487562	
mm_127685.1	chr15	102966703	102966903	+	1	NA	NA	NA	7	NM_010462	209448	Mm.31665	NM_010462	ENSMUSG00000022484	Hoxc10	AI506621|Hox-3.6	homeobox C10	protein-coding	0.060000	0.552239	29(CTCCTTAAAAAC,-,0.00),31(CCTTAAAAACCC,+,0.00)
mm_131257.1	chr16	10785535	10785735	+	1	NA	NA	NA	-99	NM_001271603	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.050000	0.616915	
mm_131303.1	chr16	11420609	11420809	+	1	NA	NA	NA	15061	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.010000	0.507463	
mm_65068.1	chr7	18925681	18925881	-	1	NA	NA	NA	-107	NM_001029877	384569	Mm.262724	NM_001029877	ENSMUSG00000030411	Nova2	Gm1424	neuro-oncological ventral antigen 2	protein-coding	0.040000	0.731343	
mm_52476.1	chr6	114302498	114302698	+	1	NA	NA	NA	19963	NM_178703	232333	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.025000	0.577114	
mm_164204.1	chr15	81521999	81522199	-	1	NA	NA	NA	55783	NM_019712	56438	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.020000	0.472637	-58(CACTTTTAAAAC,-,0.00),-56(CTTTTAAAACGA,+,0.00)
mm_154068.1	chr19	55743107	55743307	-	1	NA	NA	NA	1397	NM_001142923	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.105000	0.751244	
mm_81965.1	chr9	120950078	120950278	+	1	NA	NA	NA	-4908	NR_106058	102465661		NR_106058	ENSMUSG00000106193	Mir7090	mmu-mir-7090	microRNA 7090	ncRNA	0.025000	0.487562	
mm_16224.1	chr2	173152970	173153170	+	1	NA	NA	NA	-3	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.040000	0.582090	
mm_137713.1	chr17	29099659	29099859	+	1	NA	NA	NA	5990	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.010000	0.502488	
mm_13557.1	chr2	112265453	112265653	+	1	NA	NA	NA	-761	NM_133649	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.110000	0.691542	
mm_144629.1	chr18	32939073	32939273	+	1	NA	NA	NA	132	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.115000	0.776119	
mm_157391.1	chrX	38406569	38406769	-	1	NA	NA	NA	49791	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.000000	0.288557	-80(GCTTATATGGTA,+,0.00)
mm_92153.1	chr10	67535241	67535441	-	1	NA	NA	NA	-2528	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.095000	0.696517	
mm_132812.1	chr16	45163165	45163365	+	1	NA	NA	NA	4436	NM_026402	67841	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	0.015000	0.407960	
mm_169977.1	chr17	14978773	14978973	+	1	NA	NA	NA	9	NM_001123370	100041574	Mm.393767	NM_001123370	ENSMUSG00000036552	9030025P20Rik	D17Zt9e	RIKEN cDNA 9030025P20 gene	protein-coding	0.110000	0.681592	
mm_134517.1	chr16	19218323	19218523	-	1	NA	NA	NA	68318	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.005000	0.363184	
mm_32934.1	chr4	119255342	119255542	+	1	NA	NA	NA	1	NM_153105	242653	Mm.130701	NM_153105	ENSMUSG00000066058	Cldn19	-	claudin 19	protein-coding	0.020000	0.621891	
mm_93238.1	chr10	95415191	95415391	-	1	NA	NA	NA	-8	NM_001168657	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.040000	0.557214	
mm_70031.1	chr7	142576578	142576778	-	1	NA	NA	NA	469	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.015000	0.532338	
mm_8739.1	chr1	160232630	160232830	-	1	NA	NA	NA	-19838	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0.010000	0.432836	
mm_26124.1	chr3	137867678	137867878	+	1	NA	NA	NA	103	NM_001033155	70604	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	0.200000	0.850746	
mm_67709.1	chr7	89941122	89941322	-	1	NA	NA	NA	-18	NM_001291288	67669	Mm.28679	NM_026304	ENSMUSG00000062797	Hikeshi	0610007P06Rik|1110002N09Rik|l(7)6Rn|l7Rn6	heat shock protein nuclear import factor	protein-coding	0.060000	0.562189	
mm_158356.1	chrX	134600177	134600377	-	1	NA	NA	NA	728	NM_013463	11605	Mm.1114	NM_013463	ENSMUSG00000031266	Gla	Ags	galactosidase, alpha	protein-coding	0.015000	0.452736	
mm_10729.1	chr2	22895464	22895664	+	1	NA	NA	NA	42	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.105000	0.686567	
mm_50074.1	chr6	41339685	41339885	+	1	NA	NA	NA	-14320	NM_001038996	436522	Mm.443385	NM_001038996	ENSMUSG00000071521	Try10	-	trypsin 10	protein-coding	0.005000	0.427861	
mm_71855.1	chr8	68906107	68906307	+	1	NA	NA	NA	25652	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.010000	0.318408	
mm_105984.1	chr11	115612825	115613025	-	1	NA	NA	NA	44	NM_001243584	69674	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	0.085000	0.656716	
mm_140049.1	chr17	74528299	74528499	+	1	NA	NA	NA	104	NM_007566	12211	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.085000	0.726368	
mm_123410.1	chr14	63987653	63987853	-	1	NA	NA	NA	27	NM_026359	67750	Mm.33864	NM_026359	ENSMUSG00000021961	4930578I06Rik	AI429111	RIKEN cDNA 4930578I06 gene	protein-coding	0.005000	0.547264	
mm_37325.1	chr4	119415408	119415608	-	1	NA	NA	NA	13	NM_001270435	73332	Mm.425204	NM_028506	ENSMUSG00000028637	Ccdc30	1700001O02Rik|1700041C02Rik|1700111D19Rik|4930445I03Rik	coiled-coil domain containing 30	protein-coding	0.080000	0.681592	
mm_106654.1	chr11	121118157	121118357	-	1	NA	NA	NA	420	NM_027622	70956	Mm.158506	NM_027622	ENSMUSG00000039337	Tex19.2	4921530G04Rik|Tex19b	testis expressed gene 19.2	protein-coding	0.030000	0.572139	-33(CCCTTTATAAGG,+,0.00),-33(CCCTTTATAAGG,-,0.00),-31(CTTTATAAGGCC,+,0.00)
mm_160716.1	chr10	62879712	62879912	-	1	NA	NA	NA	202	NM_027384	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.080000	0.512438	
mm_92370.1	chr10	76097470	76097670	-	1	NA	NA	NA	13448	NM_023219	64454	Mm.155678	NM_023219	ENSMUSG00000020226	Slc5a4b	2010104G07Rik|SAAT1|SGLT3-b|SGLT3b|pSGLT2	solute carrier family 5 (neutral amino acid transporters, system A), member 4b	protein-coding	0.035000	0.407960	
mm_146031.1	chr18	69521479	69521679	+	1	NA	NA	NA	175858	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.030000	0.537313	
mm_61911.1	chr7	90143114	90143314	+	1	NA	NA	NA	12982	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.313433	45(GAGTTTAAAGGC,-,0.00)
mm_12278.1	chr2	69000268	69000468	+	1	NA	NA	NA	-135432	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.005000	0.343284	-77(CCGTTTTTAAGA,-,0.00)
mm_148082.1	chr18	73251711	73251911	-	1	NA	NA	NA	-320894	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.015000	0.487562	
mm_100762.1	chr11	4497490	4497690	-	1	NA	NA	NA	-56508	NM_029458	75828	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0.020000	0.472637	
mm_9899.1	chr1	186705979	186706179	-	1	NA	NA	NA	-90	NM_001329107	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.040000	0.522388	
mm_70281.1	chr8	3621386	3621586	+	1	NA	NA	NA	-65	NM_001195244	100503890	Mm.254898	NM_001195244	ENSMUSG00000087687	Pet100	2900053A13Rik	PET100 homolog	protein-coding	0.065000	0.537313	
mm_26860.1	chr3	14872428	14872628	-	1	NA	NA	NA	8990	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.000000	0.412935	
mm_112114.1	chr12	112797632	112797832	-	1	NA	NA	NA	-11243	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.025000	0.611940	
mm_116078.1	chr13	28412998	28413198	-	1	NA	NA	NA	270614	NM_023746	28078	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0.005000	0.298507	
mm_40374.1	chr5	52363818	52364018	+	1	NA	NA	NA	114	NM_011435	20657	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	0.015000	0.597015	
mm_140592.1	chr17	10265398	10265598	-	1	NA	NA	NA	53863	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.000000	0.303483	
mm_61992.1	chr7	91108700	91108900	+	1	NA	NA	NA	18014	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.343284	
mm_139973.1	chr17	71781118	71781318	+	1	NA	NA	NA	-81	NM_001271483	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	0.005000	0.507463	
mm_137848.1	chr17	31067182	31067382	+	1	NA	NA	NA	9588	NM_009593	11307	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding	0.025000	0.567164	
mm_90553.1	chr10	128103966	128104166	+	1	NA	NA	NA	11283	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.010000	0.402985	
mm_115890.1	chr13	22006336	22006536	-	1	NA	NA	NA	3305	NM_019429	54373	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0.030000	0.572139	
mm_73068.1	chr8	94415373	94415573	+	1	NA	NA	NA	19630	NR_015514	320377	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0.005000	0.542289	
mm_92931.1	chr10	84527255	84527455	-	1	NA	NA	NA	6533	NM_175451	216197	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.020000	0.452736	
mm_72099.1	chr8	71592090	71592290	+	1	NA	NA	NA	6	NM_001294269	66171	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	0.115000	0.696517	
mm_101576.1	chr11	34317678	34317878	-	1	NA	NA	NA	2956	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.005000	0.338308	
mm_156647.1	chrX	157699112	157699312	+	1	NA	NA	NA	239	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.025000	0.537313	
mm_106001.1	chr11	115699268	115699468	-	1	NA	NA	NA	166	NM_001313937	14784	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.020000	0.592040	
mm_3726.1	chr1	155054894	155055094	+	1	NA	NA	NA	44642	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.020000	0.507463	
mm_157231.1	chrX	16817256	16817456	-	1	NA	NA	NA	10	NM_172778	109731	Mm.241656	NM_172778	ENSMUSG00000040147	Maob	6330414K01Rik|MAO-B	monoamine oxidase B	protein-coding	0.065000	0.621891	
mm_113582.1	chr13	40860119	40860319	+	1	NA	NA	NA	451	NM_023887	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.035000	0.482587	
mm_130529.1	chr15	98917959	98918159	-	1	NA	NA	NA	39	NM_029098	74775	Mm.385020	NM_029098	ENSMUSG00000022999	Lmbr1l	1110013E13Rik|AA415653|D15Ertd735e|Limr	limb region 1 like	protein-coding	0.095000	0.706468	-74(CCTTTAAGACTA,+,0.00),-47(GCCCCTTTAAGG,-,0.00),-46(CCCCTTTAAGGG,-,0.00),-45(CCCTTTAAGGGC,+,0.00),-44(CCTTTAAGGGCG,+,0.00)
mm_55399.1	chr6	60813462	60813662	-	1	NA	NA	NA	15442	NM_001042451	20617	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alphaSYN	synuclein, alpha	protein-coding	0.010000	0.338308	24(CCTTTTATAATA,+,0.00)
mm_69172.1	chr7	127215311	127215511	-	1	NA	NA	NA	3034	NM_017461	54204	Mm.18	NM_017461	ENSMUSG00000000486	Sept1	Diff6|Pnutl3	septin 1	protein-coding	0.050000	0.577114	
mm_48665.1	chr5	145981207	145981407	-	1	NA	NA	NA	28310	NM_019792	56388	Mm.301900	NM_019792	ENSMUSG00000029630	Cyp3a25	AI327008	cytochrome P450, family 3, subfamily a, polypeptide 25	protein-coding	0.000000	0.308458	-24(AAGTCTAAAAGC,-,0.00)
mm_18205.1	chr2	46442807	46443007	-	1	NA	NA	NA	746302	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.020000	0.417910	
mm_128848.1	chr15	71727797	71727997	-	1	NA	NA	NA	-59	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding	0.085000	0.681592	
mm_76557.1	chr8	88362015	88362215	-	1	NA	NA	NA	76	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.170000	0.746269	
mm_166203.1	chr5	41035557	41035757	+	1	NA	NA	NA	672034	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.010000	0.398010	79(TTTTTAAAAGCG,+,0.00)
mm_171340.1	chr4	102882495	102882695	-	1	NA	NA	NA	-103784	NM_001163767	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.030000	0.487562	
mm_159736.1	chr5	65763344	65763544	+	1	NA	NA	NA	-77	NM_001024917	333789	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.140000	0.796020	
mm_74940.1	chr8	25813072	25813272	-	1	NA	NA	NA	4698	NM_011485	20845	Mm.293314	NM_011485	ENSMUSG00000031574	Star	AV363654|D8Ertd419e|stARD1	steroidogenic acute regulatory protein	protein-coding	0.010000	0.457711	
mm_118637.1	chr14	21426584	21426784	+	1	NA	NA	NA	-73086	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.010000	0.467662	
mm_13060.1	chr2	91115104	91115304	+	1	NA	NA	NA	-2940	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.075000	0.616915	
mm_63290.1	chr7	126797527	126797727	+	1	NA	NA	NA	1551	NM_001177307	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.035000	0.606965	
mm_34231.1	chr4	141088244	141088444	+	1	NA	NA	NA	-1	NM_177867	329972	Mm.247201	NM_177867	ENSMUSG00000045004	Spata21	4933414G08	spermatogenesis associated 21	protein-coding	0.015000	0.532338	
mm_158468.1	chrX	140956596	140956796	-	1	NA	NA	NA	15	NM_016883	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	0.035000	0.507463	
mm_123545.1	chr14	66829879	66830079	-	1	NA	NA	NA	38621	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.025000	0.452736	
mm_156892.1	chrX	166663337	166663537	+	1	NA	NA	NA	1412	NR_046015	382255	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA	0.005000	0.402985	
mm_15779.1	chr2	164333338	164333538	+	1	NA	NA	NA	673	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.045000	0.492537	
mm_157121.1	chrX	9444580	9444780	-	1	NA	NA	NA	24644	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.487562	
mm_103656.1	chr11	78973333	78973533	-	1	NA	NA	NA	11491	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.035000	0.502488	
mm_13132.1	chr2	91811543	91811743	+	1	NA	NA	NA	81505	NM_001080754	228361	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	0.010000	0.487562	
mm_13874.1	chr2	119872751	119872951	+	1	NA	NA	NA	-24377	NM_001164274	29808	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	0.140000	0.716418	
mm_127956.1	chr15	11399580	11399780	-	1	NA	NA	NA	-22	NM_033074	110960	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	0.080000	0.621891	
mm_40615.1	chr5	64803374	64803574	+	1	NA	NA	NA	-49	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.085000	0.751244	
mm_170639.1	chr19	8989052	8989252	+	1	NA	NA	NA	-132	NR_104460	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.070000	0.671642	
mm_163605.1	chr13	48968181	48968381	-	1	NA	NA	NA	169	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.155000	0.805970	70(CCCCCTAAAGGG,-,0.00),72(CCCTAAAGGGCC,+,0.00)
mm_164725.1	chr17	57087564	57087764	-	1	NA	NA	NA	118	NM_009451	22153	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	0.065000	0.631841	
mm_14698.1	chr2	142217520	142217720	+	1	NA	NA	NA	683844	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.005000	0.393035	
mm_21538.1	chr2	163692007	163692207	-	1	NA	NA	NA	-1930	NM_011106	18769	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.000000	0.432836	
mm_56263.1	chr6	90904203	90904403	-	1	NA	NA	NA	-94180	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.000000	0.452736	
mm_27566.1	chr3	58621113	58621313	-	1	NA	NA	NA	15994	NM_001081262	545527	Mm.357722	NM_001081262	ENSMUSG00000070471	Erich6	4932431H17Rik|Fam194a	glutamate rich 6	protein-coding	0.015000	0.422886	
mm_112255.1	chr12	113827096	113827296	-	1	NA	NA	NA	283288	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.010000	0.522388	
mm_891.1	chr1	52845019	52845219	+	1	NA	NA	NA	81	NM_146108	227095	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	0.050000	0.611940	
mm_148252.1	chr18	80738206	80738406	-	1	NA	NA	NA	-25235	NM_001164109	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.015000	0.522388	
mm_2124.1	chr1	87901153	87901353	+	1	NA	NA	NA	-46954	NR_136921	100503175	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.015000	0.542289	-68(CCTTTTCTGGTC,+,0.00)
mm_162958.1	chr11	4261484	4261684	+	1	NA	NA	NA	4016	NM_008501	16878	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.010000	0.601990	
mm_61320.1	chr7	68148863	68149063	+	1	NA	NA	NA	115270	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.030000	0.517413	
mm_90916.1	chr10	12548653	12548853	-	1	NA	NA	NA	312982	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.030000	0.522388	
mm_134729.1	chr16	22898894	22899094	-	1	NA	NA	NA	-4608	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.045000	0.572139	
mm_25649.1	chr3	121449587	121449787	+	1	NA	NA	NA	23146	NM_028044	71994	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0.030000	0.477612	-90(GTCTTTAAAAGT,-,0.00),35(CTTTTTATGCTC,+,0.00)
mm_62246.1	chr7	99164286	99164486	+	1	NA	NA	NA	18327	NM_026384	67800	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	0.030000	0.492537	-65(TCTTTTAGAAGC,+,0.00),44(GCCTCTTTATGG,-,0.00)
mm_90927.1	chr10	12826853	12827053	-	1	NA	NA	NA	34782	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.015000	0.527363	
mm_75515.1	chr8	54644599	54644799	-	1	NA	NA	NA	43918	NM_133711	69281	Mm.45833	NM_133711	ENSMUSG00000031518	Spata4	1700001N01Rik|Srg2|TSARG2	spermatogenesis associated 4	protein-coding	0.005000	0.383085	
mm_9301.1	chr1	171638931	171639131	-	1	NA	NA	NA	2869	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.502488	
mm_145683.1	chr18	61632618	61632818	+	1	NA	NA	NA	-6935	NR_045420	545261	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0.005000	0.532338	
mm_147320.1	chr18	42229768	42229968	-	1	NA	NA	NA	32203	NM_134137	107045	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	0.020000	0.457711	
mm_87513.1	chr10	52423664	52423864	+	1	NA	NA	NA	6217	NM_030250	52014	Mm.199964	NM_030250	ENSMUSG00000023068	Nus1	1600027K07Rik|AU019165|AW538011|BC003223|D10Ertd438e	NUS1 dehydrodolichyl diphosphate synthase subunit	protein-coding	0.005000	0.333333	-7(TTTTTTAAAGCT,+,0.00),57(CCCTTTATGGAC,+,0.00)
mm_19407.1	chr2	91649928	91650128	-	1	NA	NA	NA	-90	NR_027372	228359	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	0.065000	0.542289	
mm_125634.1	chr15	62039139	62039339	+	1	NA	NA	NA	-18	NR_132746	19296	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	plasmacytoma variant translocation 1	ncRNA	0.005000	0.457711	
mm_144017.1	chr17	88791915	88792115	-	1	NA	NA	NA	-39	NM_013582	16867	Mm.1644	NM_013582	ENSMUSG00000024107	Lhcgr	Gpcr19-rs1|LH-R|Lhr	luteinizing hormone/choriogonadotropin receptor	protein-coding	0.080000	0.756219	
mm_101825.1	chr11	46707005	46707205	-	1	NA	NA	NA	-1	NM_134249	171284	Mm.234654	NM_134249	ENSMUSG00000040413	Timd2	AA816106|AU019358|AU019662|C78111|G9D3|TIM-2|Tim2	T cell immunoglobulin and mucin domain containing 2	protein-coding	0.015000	0.497512	
mm_80589.1	chr9	85842437	85842637	+	1	NA	NA	NA	157	NM_011627	21983	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	0.060000	0.547264	
mm_106354.1	chr11	118393510	118393710	-	1	NA	NA	NA	8321	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.020000	0.567164	
mm_78101.1	chr9	19622154	19622354	+	1	NA	NA	NA	163	NM_172918	244713	Mm.67366	NM_172918	ENSMUSG00000057551	Zfp317	4932416G03|D230022C05Rik|KRAB9|Zfp67|Zfp75|mszf40	zinc finger protein 317	protein-coding	0.065000	0.592040	
mm_99598.1	chr11	104442382	104442582	+	1	NA	NA	NA	-191	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.165000	0.796020	
mm_40127.1	chr5	34998978	34999178	+	1	NA	NA	NA	0	NM_001163512	71729	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.015000	0.522388	
mm_103658.1	chr11	78984779	78984979	-	1	NA	NA	NA	45	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.015000	0.512438	
mm_84055.1	chr9	58158963	58159163	-	1	NA	NA	NA	158	NM_012043	26968	Mm.367887	NM_012043	ENSMUSG00000037206	Islr	AW553146|Meflin	immunoglobulin superfamily containing leucine-rich repeat	protein-coding	0.020000	0.547264	
mm_76281.1	chr8	84192572	84192772	-	1	NA	NA	NA	-13711	NR_029821	723819		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	0.105000	0.691542	
mm_25544.1	chr3	115885710	115885910	+	1	NA	NA	NA	2249	NR_027894	68161	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.015000	0.512438	
mm_42490.1	chr5	115474410	115474610	+	1	NA	NA	NA	8244	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.040000	0.492537	
mm_28631.1	chr3	95142269	95142469	-	1	NA	NA	NA	-9	NM_027206	69769	Mm.34368	NM_027206	ENSMUSG00000013707	Tnfaip8l2	1810019A08Rik|AW610835|TIPE2	tumor necrosis factor, alpha-induced protein 8-like 2	protein-coding	0.020000	0.572139	
mm_124077.1	chr14	78632656	78632856	-	1	NA	NA	NA	-3466	NM_001281794	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.010000	0.358209	
mm_14250.1	chr2	128127515	128127715	+	1	NA	NA	NA	40	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.170000	0.825871	
mm_97037.1	chr11	72267211	72267411	+	1	NA	NA	NA	467	NR_045922	73366	Mm.396157	NR_045922	ENSMUSG00000086951	1700051A21Rik	-	RIKEN cDNA 1700051A21 gene	ncRNA	0.085000	0.597015	
mm_91090.1	chr10	19015770	19015970	-	1	NA	NA	NA	-460	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.025000	0.562189	
mm_96279.1	chr11	62951057	62951257	+	1	NA	NA	NA	-36	NM_025496	66338	Mm.46166	NM_025496	ENSMUSG00000042200	Cdrt4	1700019I23Rik	CMT1A duplicated region transcript 4	protein-coding	0.010000	0.527363	
mm_130051.1	chr15	89167324	89167524	-	1	NA	NA	NA	-4516	NR_106066	102465672		NR_106066	ENSMUSG00000106328	Mir7118	mmu-mir-7118	microRNA 7118	ncRNA	0.060000	0.582090	
mm_21520.1	chr2	163632084	163632284	-	1	NA	NA	NA	-12666	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.005000	0.432836	
mm_54356.1	chr6	31088253	31088453	-	1	NA	NA	NA	-25260	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.015000	0.497512	
mm_158149.1	chrX	103469601	103469801	-	1	NA	NA	NA	13532	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.015000	0.552239	
mm_64701.1	chr7	4547347	4547547	-	1	NA	NA	NA	-880	NM_016908	53420	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	0.090000	0.646766	
mm_18296.1	chr2	52742049	52742249	-	1	NA	NA	NA	0	NM_019667	56324	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0.115000	0.701493	
mm_43680.1	chr5	138799611	138799811	+	1	NA	NA	NA	-20369	NM_001195128	384244	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0.005000	0.467662	
mm_169694.1	chr15	74997809	74998009	-	1	NA	NA	NA	122	NM_001271417	110454	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	0.000000	0.522388	
mm_3913.1	chr1	161969199	161969399	+	1	NA	NA	NA	111	NM_026078	67292	Mm.45106	NM_026078	ENSMUSG00000026698	Pigc	3110030E07Rik|AW212108	phosphatidylinositol glycan anchor biosynthesis, class C	protein-coding	0.100000	0.691542	-41(CCCCCTAAAGAG,-,0.00)
mm_43774.1	chr5	141241536	141241736	+	1	NA	NA	NA	102	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	0.150000	0.756219	
mm_120316.1	chr14	63142672	63142872	+	1	NA	NA	NA	20310	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.020000	0.517413	
mm_46908.1	chr5	114372183	114372383	-	1	NA	NA	NA	8222	NM_001159941	330171	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	0.030000	0.517413	
mm_87188.1	chr10	39369839	39370039	+	1	NA	NA	NA	140	NM_001122893	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.120000	0.746269	
mm_56173.1	chr6	88019872	88020072	-	1	NA	NA	NA	-177	NM_001293655	19349	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.010000	0.343284	
mm_71103.1	chr8	35439250	35439450	+	1	NA	NA	NA	56183	NM_026067	67276	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	0.005000	0.432836	
mm_143110.1	chr17	57193994	57194194	-	1	NA	NA	NA	87	NM_019418	50930	Mm.483369	NM_019418	ENSMUSG00000005824	Tnfsf14	HVEM-L|HVEML|LIGHT|LTg|Ly113|Tnlg1d	tumor necrosis factor (ligand) superfamily, member 14	protein-coding	0.030000	0.572139	
mm_68950.1	chr7	126563598	126563798	-	1	NA	NA	NA	2668	NM_146200	56347	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.030000	0.462687	
mm_11953.1	chr2	52967610	52967810	+	1	NA	NA	NA	109842	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.015000	0.512438	
mm_54035.1	chr6	12748990	12749190	-	1	NA	NA	NA	163	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding	0.075000	0.611940	
mm_61814.1	chr7	87304156	87304356	+	1	NA	NA	NA	57607	NM_001285833	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	0.000000	0.363184	
mm_162625.1	chr1	183420555	183420755	+	1	NA	NA	NA	1407	NM_001308052	78772	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0.020000	0.497512	
mm_80213.1	chr9	72491954	72492154	+	1	NA	NA	NA	-95	NM_009359	21778	Mm.14485	NM_009359	ENSMUSG00000090626	Tex9	Gm19407|tsec-1	testis expressed gene 9	protein-coding	0.060000	0.582090	
mm_39374.1	chr5	12383231	12383431	+	1	NA	NA	NA	165	NM_028882	108151	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.040000	0.577114	
mm_122987.1	chr14	54985033	54985233	-	1	NA	NA	NA	-9357	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.025000	0.567164	86(GTCTTTAAAGGA,-,0.00),87(TCTTTAAAGGAG,+,0.00)
mm_144209.1	chr18	9707550	9707750	+	1	NA	NA	NA	2	NM_130449	140792	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.120000	0.731343	
mm_71560.1	chr8	49819006	49819206	+	1	NA	NA	NA	-549006	NR_046067	100039954	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.020000	0.467662	
mm_167370.1	chr8	89427133	89427333	+	1	NA	NA	NA	-383071	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.005000	0.457711	
mm_76497.1	chr8	86686656	86686856	-	1	NA	NA	NA	35187	NM_001168591	66887	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding	0.005000	0.557214	
mm_5881.1	chr1	53887641	53887841	-	1	NA	NA	NA	38317	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.020000	0.522388	
mm_153522.1	chr19	41747504	41747704	-	1	NA	NA	NA	643	NR_040320	100502871	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	0.030000	0.547264	
mm_17429.1	chr2	27475560	27475760	-	1	NA	NA	NA	13	NM_001113573	67382	Mm.28721	NM_023336	ENSMUSG00000026918	Brd3	2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3	bromodomain containing 3	protein-coding	0.150000	0.741294	
mm_48692.1	chr5	146794711	146794911	-	1	NA	NA	NA	145	NM_011669	22217	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.190000	0.860697	
mm_58810.1	chr7	16399946	16400146	+	1	NA	NA	NA	-1150	NM_198631	330474	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.070000	0.606965	
mm_6899.1	chr1	84750439	84750639	-	1	NA	NA	NA	-54318	NM_152915	227325	Mm.292560	NM_152915	ENSMUSG00000036766	Dner	A930026D19Rik|BET|Bret	delta/notch-like EGF repeat containing	protein-coding	0.010000	0.353234	
mm_104548.1	chr11	96777379	96777579	-	1	NA	NA	NA	76	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.090000	0.681592	
mm_147852.1	chr18	63692224	63692424	-	1	NA	NA	NA	35	NM_016792	53382	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.125000	0.751244	
mm_8701.1	chr1	158712767	158712967	-	1	NA	NA	NA	207242	NR_030441	735253		NR_030441	ENSMUSG00000070103	Mir488	Mirn488|mir-488|mmu-mir-488	microRNA 488	ncRNA	0.000000	0.338308	-27(GCTTAAATACTG,+,0.00)
mm_87016.1	chr10	26917201	26917401	+	1	NA	NA	NA	144789	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.000000	0.323383	
mm_162194.1	chrX	113639799	113639999	+	1	NA	NA	NA	341643	NM_001142570	93837	Mm.79760	NM_033605	ENSMUSG00000025592	Dach2	9430028N04Rik	dachshund 2 (Drosophila)	protein-coding	0.010000	0.407960	
mm_150399.1	chr19	36554602	36554802	+	1	NA	NA	NA	63	NM_172637	226098	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain containing 2	protein-coding	0.210000	0.850746	
mm_21682.1	chr2	164428849	164429049	-	1	NA	NA	NA	14239	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.015000	0.537313	
mm_99484.1	chr11	102606802	102607002	+	1	NA	NA	NA	2471	NM_020510	57265	Mm.36416	NM_020510	ENSMUSG00000050288	Fzd2	AL033370|AW456835|Fz10|Fzd10|Mfz10|Mfz10a	frizzled class receptor 2	protein-coding	0.020000	0.457711	16(TTCTATAAAAGC,-,0.00)
mm_144919.1	chr18	37655803	37656003	+	1	NA	NA	NA	-6042	NM_033584	93709	Mm.247203	NM_033584	ENSMUSG00000103144	Pcdhga1	-	protocadherin gamma subfamily A, 1	protein-coding	0.055000	0.562189	
mm_51662.1	chr6	86195318	86195518	+	1	NA	NA	NA	191	NM_031199	21802	Mm.137222	NM_031199	ENSMUSG00000029999	Tgfa	wa-1|wa1	transforming growth factor alpha	protein-coding	0.175000	0.781095	
mm_167002.1	chr7	49553821	49554021	+	1	NA	NA	NA	82914	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.010000	0.552239	
mm_86440.1	chr10	3973098	3973298	+	1	NA	NA	NA	123	NM_172308	270685	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.065000	0.646766	
mm_162996.1	chr11	29862409	29862609	+	1	NA	NA	NA	-36841	NM_176829	216622	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0.010000	0.388060	
mm_54626.1	chr6	38688020	38688220	-	1	NA	NA	NA	25051	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.025000	0.393035	87(TTTTTTAAGGAC,+,0.00)
mm_112085.1	chr12	112674134	112674334	-	1	NA	NA	NA	42	NM_001165894	11651	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.205000	0.865672	
mm_132839.1	chr16	45610362	45610562	+	1	NA	NA	NA	22	NM_001159297	14525	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	0.015000	0.572139	
mm_15327.1	chr2	155754851	155755051	+	1	NA	NA	NA	3734	NM_011171	19124	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	0.015000	0.512438	
mm_81570.1	chr9	110420759	110420959	+	1	NA	NA	NA	1051	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.005000	0.482587	
mm_153640.1	chr19	44107370	44107570	-	1	NA	NA	NA	7	NM_007700	12675	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	0.115000	0.716418	
mm_27630.1	chr3	61362991	61363191	-	1	NA	NA	NA	-1416	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.045000	0.557214	
mm_134009.1	chr16	4875644	4875844	-	1	NA	NA	NA	4107	NM_145359	207740	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.035000	0.656716	
mm_52452.1	chr6	113681949	113682149	+	1	NA	NA	NA	-15001	NM_001347356	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.000000	0.432836	
mm_10256.1	chr2	9352390	9352590	+	1	NA	NA	NA	162975	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.015000	0.422886	-93(GACTATAAAAGC,-,0.00)
mm_143490.1	chr17	71310885	71311085	-	1	NA	NA	NA	-20	NM_145158	246707	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.115000	0.706468	
mm_54323.1	chr6	30477450	30477650	-	1	NA	NA	NA	16565	NR_131049	69337	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	0.020000	0.477612	-34(GACTATATAAAC,-,0.00)
mm_118628.1	chr14	21243377	21243577	+	1	NA	NA	NA	167325	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.005000	0.298507	
mm_39739.1	chr5	29434607	29434807	+	1	NA	NA	NA	40	NM_001033457	433864	Mm.262815	NM_001033457	ENSMUSG00000001569	Nom1	D5Kng1|Gm1040	nucleolar protein with MIF4G domain 1	protein-coding	0.095000	0.606965	-1(GCGTCTATAGGC,-,0.00)
mm_5081.1	chr1	4409161	4409361	-	1	NA	NA	NA	-20	NM_001195662	19888	Mm.294263	NM_011283	ENSMUSG00000025900	Rp1	Dcdc3|Orp1|Rp1h|mG145	retinitis pigmentosa 1 (human)	protein-coding	0.000000	0.467662	
mm_17150.1	chr2	25211302	25211502	-	1	NA	NA	NA	87	NM_021393	58202	Mm.116418	NM_021393	ENSMUSG00000013465	Nelfb	A730008L03Rik|AB041607|AI663983|Cobra1|Nelf-b	negative elongation factor complex member B	protein-coding	0.095000	0.686567	
mm_158649.1	chrX	155572337	155572537	-	1	NA	NA	NA	50890	NM_001093750	211612	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	0.000000	0.268657	
mm_142650.1	chr17	47535738	47535938	-	1	NA	NA	NA	30787	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.020000	0.542289	
mm_19186.1	chr2	84412564	84412764	-	1	NA	NA	NA	12602	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.000000	0.318408	
mm_69142.1	chr7	127051602	127051802	-	1	NA	NA	NA	275	NM_026918	69036	Mm.21835	NM_026918	ENSMUSG00000049350	Zg16	1810010M01Rik|AI593689|ZG16p	zymogen granule protein 16	protein-coding	0.035000	0.527363	
mm_118043.1	chr13	101694593	101694793	-	1	NA	NA	NA	-2063	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.090000	0.636816	
mm_137526.1	chr17	27398059	27398259	+	1	NA	NA	NA	40062	NR_106077	102466228		NR_106077	ENSMUSG00000106215	Mir7218	mmu-mir-7218	microRNA 7218	ncRNA	0.025000	0.517413	
mm_29551.1	chr3	116807671	116807871	-	1	NA	NA	NA	395	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.020000	0.507463	
mm_73979.1	chr8	120537334	120537534	+	1	NA	NA	NA	25	NM_001145896	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.115000	0.721393	
mm_86600.1	chr10	13500938	13501138	+	1	NA	NA	NA	10	NM_025799	66848	Mm.26625	NM_025799	ENSMUSG00000019810	Fuca2	0610025O11Rik|5530401P20Rik	fucosidase, alpha-L- 2, plasma	protein-coding	0.030000	0.567164	
mm_59380.1	chr7	25913842	25914042	+	1	NA	NA	NA	16284	NM_009999	13088	Mm.218749	NM_009999	ENSMUSG00000030483	Cyp2b10	Cyp2b|Cyp2b20|p16	cytochrome P450, family 2, subfamily b, polypeptide 10	protein-coding	0.025000	0.542289	
mm_76962.1	chr8	106134853	106135053	-	1	NA	NA	NA	-447	NR_040345	69771	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.015000	0.601990	
mm_62752.1	chr7	112023184	112023384	+	1	NA	NA	NA	-222	NM_133758	74996	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	0.100000	0.671642	
mm_59285.1	chr7	24918694	24918894	+	1	NA	NA	NA	14448	NM_001130152	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.005000	0.582090	
mm_137858.1	chr17	31114941	31115141	+	1	NA	NA	NA	14570	NM_011575	21786	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.030000	0.532338	
mm_168612.1	chr1	176717702	176717902	-	1	NA	NA	NA	54621	NR_029775	723921		NR_029775	ENSMUSG00000065573	Mir350	Mirn350|mir-350|mmu-mir-350	microRNA 350	ncRNA	0.005000	0.462687	
mm_124249.1	chr14	101640356	101640556	-	1	NA	NA	NA	15	NM_001033132	66200	Mm.250474	NM_001033132	ENSMUSG00000075486	Commd6	1110059J08Rik|1700063H17Rik	COMM domain containing 6	protein-coding	0.050000	0.567164	
mm_85536.1	chr9	106561527	106561727	-	1	NA	NA	NA	-2	NM_026645	68265	Mm.141451	NM_026645	ENSMUSG00000023577	Iqcf3	1700012F17Rik|AV040440	IQ motif containing F3	protein-coding	0.015000	0.547264	
mm_130130.1	chr15	90545038	90545238	-	1	NA	NA	NA	134250	NM_025815	66871	Mm.290991	NM_025815	ENSMUSG00000052560	Cpne8	1200003E11Rik|1500031E20Rik	copine VIII	protein-coding	0.000000	0.313433	
mm_131205.1	chr16	8637644	8637844	+	1	NA	NA	NA	37	NM_016881	54128	Mm.9699	NM_016881	ENSMUSG00000022711	Pmm2	AI585868|C86848	phosphomannomutase 2	protein-coding	0.070000	0.616915	
mm_168310.1	chr11	109011705	109011905	-	1	NA	NA	NA	91456	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.085000	0.626866	
mm_1250.1	chr1	62816210	62816410	+	1	NA	NA	NA	-21578	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.015000	0.412935	
mm_32194.1	chr4	101355772	101355972	+	1	NA	NA	NA	376	NR_040708	77866	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0.040000	0.507463	
mm_27043.1	chr3	27153750	27153950	-	1	NA	NA	NA	4	NM_007900	13605	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536|mKIAA4037	ect2 oncogene	protein-coding	0.070000	0.572139	-15(GCTCTTAGAGAG,+,0.00)
mm_66606.1	chr7	45460869	45461069	-	1	NA	NA	NA	-1083	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.035000	0.606965	
mm_136158.1	chr16	88290092	88290292	-	1	NA	NA	NA	66	NM_146072	14805	Mm.5134	NM_010348	ENSMUSG00000022935	Grik1	A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1	glutamate receptor, ionotropic, kainate 1	protein-coding	0.010000	0.532338	
mm_15126.1	chr2	153825958	153826158	+	1	NA	NA	NA	45026	NM_001305048	76407	Mm.33629	NM_029599	ENSMUSG00000027480	Sun5	1700021O15Rik|SPAG4L-2|SRG4|Spag4l	Sad1 and UNC84 domain containing 5	protein-coding	0.085000	0.557214	
mm_58515.1	chr7	4133063	4133263	+	1	NA	NA	NA	3763	NR_033548	100037396	Mm.447887	NR_033548	ENSMUSG00000085886	D030047H15Rik	Gm15924|OTTMUSG00000027889	RIKEN cDNA D030047H15 gene	ncRNA	0.020000	0.656716	
mm_57355.1	chr6	124756926	124757126	-	1	NA	NA	NA	-539	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.060000	0.661692	
mm_15056.1	chr2	152911291	152911491	+	1	NA	NA	NA	39	NM_001081044	228785	Mm.250604	NM_001081044	ENSMUSG00000027470	Mylk2	9830004H17Rik|BB138278	myosin, light polypeptide kinase 2, skeletal muscle	protein-coding	0.020000	0.587065	
mm_26351.1	chr3	142548668	142548868	+	1	NA	NA	NA	-11284	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.005000	0.293532	
mm_112448.1	chr13	5861568	5861768	+	1	NA	NA	NA	179	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.085000	0.606965	
mm_105340.1	chr11	102994858	102995058	-	1	NA	NA	NA	4963	NR_105896	102466988		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.060000	0.641791	
mm_66625.1	chr7	45488688	45488888	-	1	NA	NA	NA	8	NM_027903	71755	Mm.34208	NM_027903	ENSMUSG00000011382	Dhdh	1300018L09Rik|AA591799|Xld-1|Xld1	dihydrodiol dehydrogenase (dimeric)	protein-coding	0.095000	0.646766	
mm_6631.1	chr1	78422603	78422803	-	1	NA	NA	NA	66194	NR_102758	23874	Mm.17898	NM_011811	ENSMUSG00000026245	Farsb	C76708|Farsa|Farsl|Farslb|Frsb	phenylalanyl-tRNA synthetase, beta subunit	protein-coding	0.005000	0.487562	
mm_146939.1	chr18	32138087	32138287	-	1	NA	NA	NA	18	NM_008934	19123	Mm.2786	NM_008934	ENSMUSG00000024386	Proc	PC	protein C	protein-coding	0.025000	0.522388	
mm_28701.1	chr3	95545303	95545503	-	1	NA	NA	NA	-14274	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.025000	0.527363	
mm_100331.1	chr11	118245245	118245445	+	1	NA	NA	NA	3247	NM_001112699	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.005000	0.457711	
mm_139422.1	chr17	53479384	53479584	+	1	NA	NA	NA	250	NM_025887	271457	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0.160000	0.766169	
mm_143734.1	chr17	81465537	81465737	-	1	NA	NA	NA	272750	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.338308	
mm_69869.1	chr7	141458821	141459021	-	1	NA	NA	NA	-2173	NM_001025103	213573	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.030000	0.601990	
mm_5828.1	chr1	52800297	52800497	-	1	NA	NA	NA	17291	NM_008384	16329	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	0.025000	0.507463	
mm_130959.1	chr15	103314648	103314848	-	1	NA	NA	NA	-4310	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.030000	0.651741	-21(CCCTAGAAAAGA,-,0.00)
mm_43939.1	chr5	145123611	145123811	+	1	NA	NA	NA	9455	NM_023142	11867	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.065000	0.611940	
mm_29699.1	chr3	123117067	123117267	-	1	NA	NA	NA	-82180	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.025000	0.597015	
mm_62909.1	chr7	117411351	117411551	+	1	NA	NA	NA	30472	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.015000	0.477612	
mm_66810.1	chr7	47252858	47253058	-	1	NA	NA	NA	-110	NM_001288801	668725	Mm.436563	NM_001177566	ENSMUSG00000074111	Mrgpra9	EG668725|MrgA9	MAS-related GPR, member A9	protein-coding	0.005000	0.407960	
mm_126143.1	chr15	78348879	78349079	+	1	NA	NA	NA	380	NR_106138	102466845		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0.005000	0.572139	
mm_83044.1	chr9	37433053	37433253	-	1	NA	NA	NA	22	NM_001164767	19649	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0.085000	0.721393	
mm_110439.1	chr12	49841723	49841923	-	1	NA	NA	NA	-360961	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA	0.015000	0.427861	
mm_120809.1	chr14	75015937	75016137	+	1	NA	NA	NA	10	NM_198642	271221	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.060000	0.547264	
mm_149975.1	chr19	29067247	29067447	+	1	NA	NA	NA	46	NR_045687	100503337	Mm.103412	NR_045687		Gm9895	ENSMUSG00000052976	predicted gene 9895	ncRNA	0.020000	0.552239	
mm_78507.1	chr9	32754359	32754559	+	1	NA	NA	NA	58417	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.020000	0.477612	
mm_54930.1	chr6	48086494	48086694	-	1	NA	NA	NA	-1	NM_001163475	69228	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	0.150000	0.781095	
mm_94287.1	chr11	4031378	4031578	+	1	NA	NA	NA	-304	NM_146013	103655	Mm.337476	NM_146013	ENSMUSG00000019368	Sec14l4	AI256582|AW536553|SPF|TAP	SEC14-like lipid binding 4	protein-coding	0.030000	0.567164	
mm_55731.1	chr6	77292136	77292336	-	1	NA	NA	NA	49519	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.000000	0.383085	
mm_110613.1	chr12	56613140	56613340	-	1	NA	NA	NA	44	NM_008701	18094	Mm.129420	NM_008701	ENSMUSG00000058669	Nkx2-9	Nkx-2.9|Nkx2-8|Nkx2.9|tinman	NK2 homeobox 9	protein-coding	0.070000	0.601990	
mm_129311.1	chr15	77755142	77755342	-	1	NA	NA	NA	-13	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.000000	0.631841	
mm_89301.1	chr10	87913668	87913868	+	1	NA	NA	NA	52657	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.035000	0.542289	
mm_173168.1	chrX	42632939	42633139	+	1	NA	NA	NA	127717	NM_001313691	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	0.050000	0.636816	
mm_153273.1	chr19	37175946	37176146	-	1	NA	NA	NA	17	NM_001290826	208922	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.020000	0.547264	
mm_86168.1	chr9	119088144	119088344	-	1	NA	NA	NA	17	NM_001293648	18799	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	0.045000	0.631841	
mm_99740.1	chr11	106387130	106387330	+	1	NA	NA	NA	-4449	NM_010494	15896	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.020000	0.482587	
mm_121146.1	chr14	101898495	101898695	+	1	NA	NA	NA	57972	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.020000	0.482587	
mm_153655.1	chr19	44394750	44394950	-	1	NA	NA	NA	12859	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.000000	0.422886	
mm_43528.1	chr5	137288183	137288383	+	1	NA	NA	NA	29	NM_001290010	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.120000	0.800995	
mm_101442.1	chr11	30159567	30159767	-	1	NA	NA	NA	38590	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.010000	0.522388	
mm_167396.1	chr8	95306493	95306693	-	1	NA	NA	NA	-8	NM_001195413	333329	Mm.484049	NM_145601	ENSMUSG00000031789	Cngb1	Cngb1b|Garp2|Gm1959	cyclic nucleotide gated channel beta 1	protein-coding	0.015000	0.557214	
mm_56023.1	chr6	86585868	86586068	-	1	NA	NA	NA	-42206	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.005000	0.537313	
mm_143763.1	chr17	81627783	81627983	-	1	NA	NA	NA	110504	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.383085	
mm_132673.1	chr16	42907453	42907653	+	1	NA	NA	NA	-92	NM_001285805	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.005000	0.502488	
mm_141243.1	chr17	27467712	27467912	-	1	NA	NA	NA	35721	NM_001013385	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.005000	0.502488	
mm_52675.1	chr6	117908672	117908872	+	1	NA	NA	NA	968	NM_001166429	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.010000	0.388060	
mm_159685.1	chr5	13398882	13399082	+	1	NA	NA	NA	-15	NM_001243073	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.075000	0.577114	-32(GCTTTAAAACCT,+,0.00)
mm_172367.1	chr7	12289091	12289291	-	1	NA	NA	NA	-15614	NM_134234	171268	Mm.377220	NM_134234	ENSMUSG00000058132	Vmn1r82	V1rg12	vomeronasal 1 receptor 82	protein-coding	0.040000	0.606965	
mm_17139.1	chr2	25080124	25080324	-	1	NA	NA	NA	-99	NM_028093	72090	Mm.33403	NM_028093	ENSMUSG00000036813	Entpd8	-	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding	0.015000	0.567164	
mm_158612.1	chrX	152644007	152644207	-	1	NA	NA	NA	42	NM_001290687	110380	Mm.40796	NM_172441	ENSMUSG00000045180	Shroom2	4832440C16|Apxl|C630003H05Rik|Shrm2	shroom family member 2	protein-coding	0.015000	0.432836	55(GTTTTTTAAAGC,-,0.00),56(TTTTTTAAAGCT,+,0.00)
mm_73062.1	chr8	94386398	94386598	+	1	NA	NA	NA	-2	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.105000	0.656716	-35(GCCCATAAAAGG,-,0.00)
mm_16379.1	chr2	178295241	178295441	+	1	NA	NA	NA	102257	NM_001007154	74189	Mm.44413	NM_028806	ENSMUSG00000027525	Phactr3	1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224	phosphatase and actin regulator 3	protein-coding	0.015000	0.343284	
mm_2445.1	chr1	99772301	99772501	+	1	NA	NA	NA	-364	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0.045000	0.537313	
mm_86291.1	chr9	121995902	121996102	-	1	NA	NA	NA	24	NM_001289559	215494	Mm.402151	NM_153540	ENSMUSG00000066235	Pomgnt2	Ago61|C85492|Gtdc2	protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2	protein-coding	0.090000	0.681592	
mm_125975.1	chr15	76295160	76295360	+	1	NA	NA	NA	826	NM_001195537	100503915	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	ENSMUSG00000071724|Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	0.065000	0.577114	
mm_38462.1	chr4	140587841	140588041	-	1	NA	NA	NA	60815	NM_001112723	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.005000	0.507463	
mm_43651.1	chr5	138280451	138280651	+	1	NA	NA	NA	42	NM_016964	50878	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	0.095000	0.597015	
mm_56390.1	chr6	94700065	94700265	-	1	NA	NA	NA	-20	NM_008377	16206	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.120000	0.756219	
mm_70106.1	chr7	142661769	142661969	-	1	NA	NA	NA	-598	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.005000	0.378109	
mm_48519.1	chr5	142903055	142903255	-	1	NA	NA	NA	3599	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.000000	0.542289	
mm_81139.1	chr9	106814029	106814229	+	1	NA	NA	NA	-7847	NM_001015507	321006	Mm.440089	NM_001015507	ENSMUSG00000040325	Vprbp	AI447437|B930007L02Rik|mKIAA0800	Vpr (HIV-1) binding protein	protein-coding	0.010000	0.497512	
mm_84353.1	chr9	64341087	64341287	-	1	NA	NA	NA	70	NM_001001295	213550	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	0.115000	0.736318	
mm_108054.1	chr12	73919251	73919451	+	1	NA	NA	NA	11484	NM_001313919	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.010000	0.338308	
mm_17903.1	chr2	35200896	35201096	-	1	NA	NA	NA	124	NM_026697	68365	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.085000	0.686567	
mm_41713.1	chr5	101888126	101888326	+	1	NA	NA	NA	123096	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.075000	0.542289	
mm_102666.1	chr11	65031627	65031827	-	1	NA	NA	NA	52692	NM_023479	68626	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	0.020000	0.467662	
mm_158895.1	chr1	22805750	22805950	-	1	NA	NA	NA	-126	NM_001012624	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.105000	0.706468	
mm_107791.1	chr12	61698862	61699062	+	1	NA	NA	NA	175795	NM_001310586	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.000000	0.348259	
mm_22361.1	chr2	181039112	181039312	-	1	NA	NA	NA	-35	NM_015730	11438	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	0.155000	0.786070	
mm_104989.1	chr11	100269799	100269999	-	1	NA	NA	NA	-28	NM_212483	68239	Mm.158190	NM_212483	ENSMUSG00000053654	Krt42	2410039E07Rik|K17n|Ka22|ecat6	keratin 42	protein-coding	0.015000	0.527363	-36(GGCTATAAAGGG,-,0.00)
mm_41337.1	chr5	90497096	90497296	+	1	NA	NA	NA	6482	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.010000	0.467662	
mm_106414.1	chr11	119111320	119111520	-	1	NA	NA	NA	-25183	NM_007625	12418	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.015000	0.542289	
mm_118960.1	chr14	27428784	27428984	+	1	NA	NA	NA	37	NM_001114879	218850	Mm.247767	NM_028945	ENSMUSG00000040651	Fam208a	4732418E12|4933409E02Rik|D14Abb1e|MommeD6	family with sequence similarity 208, member A	protein-coding	0.125000	0.746269	
mm_5415.1	chr1	33887497	33887697	-	1	NA	NA	NA	20024	NM_177235	320705	Mm.336619	NM_177235	ENSMUSG00000042182	Bend6	B230209C24Rik	BEN domain containing 6	protein-coding	0.000000	0.358209	
mm_46507.1	chr5	105136063	105136263	-	1	NA	NA	NA	3389	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.293532	-51(AACTCTAAAAGG,-,0.00),-29(CCTTTTATAGCC,+,0.00)
mm_116645.1	chr13	49168195	49168395	-	1	NA	NA	NA	-19252	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.000000	0.462687	
mm_100050.1	chr11	115163344	115163544	+	1	NA	NA	NA	103	NM_012030	26941	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0.130000	0.706468	
mm_113949.1	chr13	50422513	50422713	+	1	NA	NA	NA	4736	NM_175401	109082	Mm.18638	NM_175401	ENSMUSG00000037816	Fbxw17	1110064L07Rik|C85886	F-box and WD-40 domain protein 17	protein-coding	0.005000	0.353234	
mm_78609.1	chr9	37544964	37545164	+	1	NA	NA	NA	5809	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.075000	0.597015	
mm_59488.1	chr7	27486853	27487053	+	1	NA	NA	NA	0	NM_018820	55942	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0.090000	0.641791	
mm_96295.1	chr11	63133011	63133211	+	1	NA	NA	NA	308	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.075000	0.706468	
mm_147334.1	chr18	42898925	42899125	-	1	NA	NA	NA	481	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.070000	0.611940	
mm_147529.1	chr18	52529971	52530171	-	1	NA	NA	NA	-204	NM_001286182	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.015000	0.492537	-36(TCCCATAAAAGT,-,0.00)
mm_25224.1	chr3	103859345	103859545	+	1	NA	NA	NA	-350	NR_104070	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.005000	0.512438	
mm_130958.1	chr15	103310362	103310562	-	1	NA	NA	NA	-24	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.010000	0.492537	52(CCCTAGAAAAGC,-,0.00)
mm_123611.1	chr14	68120326	68120526	-	1	NA	NA	NA	-3326	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.015000	0.562189	
mm_148058.1	chr18	72158995	72159195	-	1	NA	NA	NA	191974	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.005000	0.437811	
mm_119759.1	chr14	54168548	54168748	+	1	NA	NA	NA	85281	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.467662	
mm_613.1	chr1	40009954	40010154	+	1	NA	NA	NA	-74714	NM_010555	16178	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.005000	0.442786	-97(GCTTTTATACAC,+,0.00),-4(CCATTTATATAC,+,0.00)
mm_154387.1	chrM	11646	11846	+	1	NA	NA	NA	NA	NA									0.000000	0.308458	-75(ACTTTTATAGGA,+,0.00)
mm_36268.1	chr4	63622316	63622516	-	1	NA	NA	NA	13	NM_029324	75524	Mm.38543	NM_029324	ENSMUSG00000058935	1700018C11Rik	bM230C2.3	RIKEN cDNA 1700018C11 gene	protein-coding	0.015000	0.552239	
mm_95880.1	chr11	58102698	58102898	+	1	NA	NA	NA	-1355	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.010000	0.532338	
mm_94974.1	chr11	31545703	31545903	+	1	NA	NA	NA	126059	NM_001024919	69556	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.020000	0.532338	-34(GGGTATTTAAGG,-,0.00)
mm_12117.1	chr2	61595783	61595983	+	1	NA	NA	NA	2786	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.010000	0.348259	
mm_171741.1	chr4	96184916	96185116	+	1	NA	NA	NA	-43864	NM_001100182	242546	Mm.302562	NM_001100182	ENSMUSG00000081225	Cyp2j12	BB197342|Cyp2j12-ps|OTTMUSG00000007939	cytochrome P450, family 2, subfamily j, polypeptide 12	protein-coding	0.005000	0.507463	-30(CCTTTTATAAGC,+,0.00),-30(CCTTTTATAAGC,-,0.00)
mm_52711.1	chr6	119479670	119479870	+	1	NA	NA	NA	102	NM_133940	101358	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.185000	0.835821	
mm_112748.1	chr13	19341793	19341993	+	1	NA	NA	NA	53920	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.388060	
mm_86243.1	chr9	121277582	121277782	-	1	NA	NA	NA	-510	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.070000	0.631841	
mm_43603.1	chr5	137883012	137883212	+	1	NA	NA	NA	-11354	NM_001024932	545812	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.005000	0.477612	
mm_77583.1	chr8	123793820	123794020	-	1	NA	NA	NA	-12076	NM_009003	19341	Mm.9221	NM_009003	ENSMUSG00000019478	Rab4a	AI848268|Rab4	RAB4A, member RAS oncogene family	protein-coding	0.005000	0.417910	
mm_21371.1	chr2	157279415	157279615	-	1	NA	NA	NA	34	NM_001039557	629499	Mm.384235	NM_001039557	ENSMUSG00000074627	Mroh8	4922505G16Rik	maestro heat-like repeat family member 8	protein-coding	0.135000	0.746269	
mm_39621.1	chr5	24423727	24423927	+	1	NA	NA	NA	-297	NM_007668	12568	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding	0.065000	0.582090	
mm_32449.1	chr4	107356577	107356777	+	1	NA	NA	NA	-11107	NM_028355	72787	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0.000000	0.492537	
mm_139068.1	chr17	46646149	46646349	+	1	NA	NA	NA	20	NM_025302	27398	Mm.391007	NM_025302	ENSMUSG00000002767	Mrpl2	CGI-22|L2mt|MRP-L14|MRP-L2|Rpml14	mitochondrial ribosomal protein L2	protein-coding	0.115000	0.661692	
mm_61008.1	chr7	49364603	49364803	+	1	NA	NA	NA	118514	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.025000	0.527363	-19(CTTTTTATGTGG,+,0.00)
mm_27618.1	chr3	59343886	59344086	-	1	NA	NA	NA	270	NM_001162884	242050	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.020000	0.427861	
mm_135358.1	chr16	43889577	43889777	-	1	NA	NA	NA	-1	NM_029128	106248	Mm.275354	NM_029128	ENSMUSG00000022704	Qtrtd1	3110012M05Rik|4930470H18Rik|AI648807|Qtrt2	queuine tRNA-ribosyltransferase domain containing 1	protein-coding	0.075000	0.552239	
mm_105367.1	chr11	103199630	103199830	-	1	NA	NA	NA	8818	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.090000	0.676617	
mm_11594.1	chr2	33431294	33431494	+	1	NA	NA	NA	-70	NM_001276332	241311	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0.140000	0.786070	
mm_136666.1	chr17	6106482	6106682	+	1	NA	NA	NA	-248	NM_001103181	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.115000	0.711443	
mm_96514.1	chr11	68475308	68475508	+	1	NA	NA	NA	-27611	NM_001004435	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.010000	0.537313	
mm_89614.1	chr10	96039478	96039678	+	1	NA	NA	NA	98915	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.020000	0.393035	
mm_26381.1	chr3	142568376	142568576	+	1	NA	NA	NA	7980	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.005000	0.417910	
mm_41460.1	chr5	90930728	90930928	+	1	NA	NA	NA	-368	NM_026788	665563	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	0.005000	0.442786	
mm_123936.1	chr14	73368275	73368475	-	1	NA	NA	NA	16896	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.040000	0.512438	
mm_106680.1	chr12	3109928	3110128	+	1	NA	NA	NA	-125763	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.015000	0.363184	
mm_170079.1	chr17	34263166	34263366	+	1	NA	NA	NA	39	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.005000	0.552239	
mm_106400.1	chr11	118869039	118869239	-	1	NA	NA	NA	40433	NM_001024931	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.035000	0.462687	
mm_60495.1	chr7	44478704	44478904	+	1	NA	NA	NA	-5713	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.010000	0.427861	
mm_124336.1	chr14	103844115	103844315	-	1	NA	NA	NA	261	NM_001136061	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.050000	0.592040	
mm_59786.1	chr7	28895124	28895324	+	1	NA	NA	NA	13568	NM_001110807	60594	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	0.010000	0.577114	
mm_158315.1	chrX	127736466	127736666	-	1	NA	NA	NA	-12	NM_001281537	73934	Mm.159093	NM_001281537	ENSMUSG00000043569	Cldn34c4	4930412D23Rik	claudin 34C4	protein-coding	0.000000	0.527363	
mm_128064.1	chr15	26761473	26761673	-	1	NA	NA	NA	133991	NM_176959	448987	Mm.253378	NM_176959	ENSMUSG00000043556	Fbxl7	AL023057|D230018M15Rik|FBL7|Fbl6	F-box and leucine-rich repeat protein 7	protein-coding	0.000000	0.303483	
mm_28333.1	chr3	89382886	89383086	-	1	NA	NA	NA	-8878	NR_040403	545539	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	ENSMUSG00000074466|OTTMUSG00000021274	predicted gene 15417	ncRNA	0.020000	0.507463	
mm_111265.1	chr12	85187754	85187954	-	1	NA	NA	NA	-10541	NM_008827	18654	Mm.4809	NM_008827	ENSMUSG00000004791	Pgf	AI854365|PIGF|Plgf	placental growth factor	protein-coding	0.020000	0.472637	
mm_77828.1	chr9	4250856	4251056	+	1	NA	NA	NA	58538	NR_136941	67618	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0.015000	0.562189	45(GAGTTGAAAAGG,-,0.00)
mm_59758.1	chr7	28827532	28827732	+	1	NA	NA	NA	2294	NM_016772	51798	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.010000	0.467662	
mm_113931.1	chr13	49622807	49623007	+	1	NA	NA	NA	14836	NM_008760	18295	Mm.4258	NM_008760	ENSMUSG00000021390	Ogn	3110079A16Rik|OG|OIF|SLRR3A|mimecan|mimican	osteoglycin	protein-coding	0.020000	0.412935	40(CTGCTTAAAAAG,-,0.00),42(GCTTAAAAAGAT,+,0.00)
mm_118240.1	chr13	111777168	111777368	-	1	NA	NA	NA	31715	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.020000	0.452736	
mm_131130.1	chr16	5885486	5885686	+	1	NA	NA	NA	793	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.070000	0.651741	
mm_126854.1	chr15	89211514	89211714	+	1	NA	NA	NA	55	NM_027805	71474	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	0.200000	0.810945	
mm_35489.1	chr4	40948008	40948208	-	1	NA	NA	NA	186	NM_009736	12017	Mm.688	NM_009736	ENSMUSG00000028416	Bag1	BAG-1|Rap46	BCL2-associated athanogene 1	protein-coding	0.155000	0.796020	
mm_23614.1	chr3	65531153	65531353	+	1	NA	NA	NA	-1839	NR_027955	71004	Mm.475465	NM_001033527	ENSMUSG00000074580	4931440P22Rik	-	RIKEN cDNA 4931440P22 gene	ncRNA	0.000000	0.393035	
mm_50512.1	chr6	49038124	49038324	+	1	NA	NA	NA	1706	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.005000	0.457711	
mm_57324.1	chr6	124738485	124738685	-	1	NA	NA	NA	124	NM_001077705	15170	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.040000	0.587065	
mm_97157.1	chr11	75467968	75468168	+	1	NA	NA	NA	18	NM_027249	380712	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	0.050000	0.616915	
mm_6636.1	chr1	78680603	78680803	-	1	NA	NA	NA	22263	NM_001136226	195434	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0.005000	0.437811	
mm_156556.1	chrX	151801053	151801253	+	1	NA	NA	NA	-2129	NM_021523	59026	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	0.045000	0.641791	
mm_10809.1	chr2	24349822	24350022	+	1	NA	NA	NA	4551	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.000000	0.477612	
mm_33922.1	chr4	136622517	136622717	+	1	NA	NA	NA	-4	NM_001243262	242707	Mm.448979	NM_001243262	ENSMUSG00000070683	Lactbl1	-	lactamase, beta-like 1	protein-coding	0.020000	0.552239	
mm_145995.1	chr18	68344311	68344511	+	1	NA	NA	NA	6808	NM_013596	17203	Mm.8003	NM_013596	ENSMUSG00000007480	Mc5r	-	melanocortin 5 receptor	protein-coding	0.010000	0.422886	
mm_122747.1	chr14	54167918	54168118	-	1	NA	NA	NA	85911	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.025000	0.472637	-34(CACTATTTAAGG,-,0.00),-32(CTATTTAAGGAC,+,0.00)
mm_55887.1	chr6	83528871	83529071	-	1	NA	NA	NA	7280	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.000000	0.308458	
mm_795.1	chr1	45345864	45346064	+	1	NA	NA	NA	34426	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.005000	0.507463	
mm_106592.1	chr11	120730382	120730582	-	1	NA	NA	NA	1539	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.020000	0.522388	
mm_124070.1	chr14	78565526	78565726	-	1	NA	NA	NA	-28766	NM_001164503	219181	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	0.000000	0.263682	29(TTTTTTATAGTA,+,0.00)
mm_139434.1	chr17	53584011	53584211	+	1	NA	NA	NA	-15	NM_001190846	18519	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.015000	0.487562	
mm_60992.1	chr7	49246112	49246312	+	1	NA	NA	NA	23	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.110000	0.726368	
mm_146708.1	chr18	13972445	13972645	-	1	NA	NA	NA	188	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.035000	0.572139	
mm_171373.1	chr4	119282342	119282542	-	1	NA	NA	NA	12071	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.030000	0.412935	
mm_7080.1	chr1	88277390	88277590	-	1	NA	NA	NA	67	NM_172505	212427	Mm.384762	NM_172505		A730008H23Rik	mFleg1	RIKEN cDNA A730008H23 gene	protein-coding	0.090000	0.587065	
mm_116886.1	chr13	55211449	55211649	-	1	NA	NA	NA	1767	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.100000	0.746269	
mm_80254.1	chr9	72807042	72807242	+	1	NA	NA	NA	-132	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.105000	0.761194	
mm_113563.1	chr13	38192454	38192654	+	1	NA	NA	NA	-12385	NM_026382	67797	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	0.040000	0.552239	
mm_26668.1	chr3	154711042	154711242	+	1	NA	NA	NA	9	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.005000	0.522388	
mm_128951.1	chr15	74763481	74763681	-	1	NA	NA	NA	-14	NM_010742	17068	Mm.878	NM_010742	ENSMUSG00000034634	Ly6d	Ly-61|Ly61|Thb	lymphocyte antigen 6 complex, locus D	protein-coding	0.015000	0.572139	
mm_43319.1	chr5	134986071	134986271	+	1	NA	NA	NA	-43	NM_009902	12739	Mm.158662	NM_009902	ENSMUSG00000070473	Cldn3	AI182374|Cpetr2|mRVP1	claudin 3	protein-coding	0.030000	0.626866	
mm_108897.1	chr12	100187014	100187214	+	1	NA	NA	NA	-854	NR_045282	100038378	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	ENSMUSG00000072884	predicted gene 10433	ncRNA	0.075000	0.542289	
mm_138119.1	chr17	34145107	34145307	+	1	NA	NA	NA	-209	NM_010388	15000	Mm.195060	NM_010388	ENSMUSG00000037548	H2-DMb2	H-2Mb2|H2-Mb2	histocompatibility 2, class II, locus Mb2	protein-coding	0.010000	0.497512	
mm_131351.1	chr16	13702390	13702590	+	1	NA	NA	NA	-27346	NR_040574	76684	Mm.491043	NR_040574		Pla2g10os	1810007I06Rik	phospholipase A2, group X, opposite strand	ncRNA	0.000000	0.497512	
mm_70308.1	chr8	4181849	4182049	+	1	NA	NA	NA	15382	NM_001346730	213027	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	0.000000	0.422886	73(GGCTTTAAATAC,-,0.00)
mm_128275.1	chr15	36794383	36794583	-	1	NA	NA	NA	55	NM_011740	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.040000	0.567164	11(GGACCTAAAAGG,-,0.00)
mm_136137.1	chr16	87128342	87128542	-	1	NA	NA	NA	-225743	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0.030000	0.442786	
mm_97283.1	chr11	76133891	76134091	+	1	NA	NA	NA	45639	NM_026664	68299	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	0.005000	0.452736	
mm_144145.1	chr18	4994823	4995023	+	1	NA	NA	NA	-51666	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.010000	0.427861	56(GTCTTTAAAGGT,-,0.00)
mm_10561.1	chr2	18027866	18028066	+	1	NA	NA	NA	717	NR_028378	100034739	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	0.065000	0.661692	-7(GCCTTTAGAGTC,+,0.00)
mm_81067.1	chr9	106179651	106179851	+	1	NA	NA	NA	911	NR_029526	387249		NR_029526	ENSMUSG00000065440	Mirlet7g	Mirnlet7g|let-7g|mmu-let-7g	microRNA let7g	ncRNA	0.005000	0.402985	
mm_77631.1	chr8	124080689	124080889	-	1	NA	NA	NA	57316	NM_001029876	382038	Mm.334891	NM_001029876	ENSMUSG00000031976	Urb2	C77575|mKIAA0133	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	protein-coding	0.040000	0.577114	
mm_7130.1	chr1	91052722	91052922	-	1	NA	NA	NA	-622	NM_001310732	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.085000	0.651741	
mm_17225.1	chr2	25535019	25535219	-	1	NA	NA	NA	11821	NM_001290413	22030	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	0.005000	0.407960	
mm_29906.1	chr3	131472887	131473087	-	1	NA	NA	NA	-91781	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.005000	0.432836	
mm_117738.1	chr13	95671403	95671603	-	1	NA	NA	NA	-25417	NM_010170	14064	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	0.015000	0.432836	
mm_81635.1	chr9	110880157	110880357	+	1	NA	NA	NA	-65	NM_001146060	235633	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0.130000	0.746269	
mm_67083.1	chr7	68276981	68277181	-	1	NA	NA	NA	-487	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.000000	0.467662	
mm_148501.1	chr19	4194535	4194735	+	1	NA	NA	NA	2461	NM_031868	19045	Mm.1970	NM_031868	ENSMUSG00000040385	Ppp1ca	Ppp1c|dism2	protein phosphatase 1, catalytic subunit, alpha isoform	protein-coding	0.015000	0.606965	
mm_29068.1	chr3	103792482	103792682	-	1	NA	NA	NA	-1019	NM_001301304	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.005000	0.412935	-35(TTCCTTAAAAGG,-,0.00),-33(CCTTAAAAGGTA,+,0.00)
mm_47652.1	chr5	125391641	125391841	-	1	NA	NA	NA	-1724	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.015000	0.482587	
mm_104863.1	chr11	99386030	99386230	-	1	NA	NA	NA	3234	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.160000	0.736318	
mm_124730.1	chr15	6580481	6580681	+	1	NA	NA	NA	734	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.025000	0.547264	
mm_170065.1	chr17	3083943	3084143	-	1	NA	NA	NA	140	NR_003519	328734	Mm.335641	NR_003519		Pisd-ps2	D030013I16Rik	phosphatidylserine decarboxylase, pseudogene 2	pseudo	0.065000	0.646766	
mm_74872.1	chr8	25016944	25017144	-	1	NA	NA	NA	-122	NM_007404	11502	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	0.105000	0.706468	
mm_87254.1	chr10	41519342	41519542	+	1	NA	NA	NA	-58	NM_016898	53599	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.140000	0.741294	
mm_10263.1	chr2	9681699	9681899	+	1	NA	NA	NA	196801	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.025000	0.487562	66(TCCTTGAAAAGC,-,0.00)
mm_164950.1	chr19	4927883	4928083	-	1	NA	NA	NA	304	NM_133803	75221	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324	dipeptidylpeptidase 3	protein-coding	0.045000	0.532338	
mm_24203.1	chr3	88620336	88620536	+	1	NA	NA	NA	-670	NM_008487	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.005000	0.502488	
mm_113453.1	chr13	35834739	35834939	+	1	NA	NA	NA	71508	NM_145938	208366	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	0.005000	0.263682	
mm_67612.1	chr7	83884133	83884333	-	1	NA	NA	NA	108	NM_030705	80889	Mm.272998	NM_030705	ENSMUSG00000070462	Mesdc1	AW061151	mesoderm development candidate 1	protein-coding	0.110000	0.656716	
mm_97785.1	chr11	82781084	82781284	+	1	NA	NA	NA	75	NM_010716	16882	Mm.277136	NM_010716	ENSMUSG00000020697	Lig3	D11Wsu78e	ligase III, DNA, ATP-dependent	protein-coding	0.105000	0.691542	-18(CCGTATTTAAAG,-,0.00)
mm_75225.1	chr8	39617366	39617566	-	1	NA	NA	NA	25212	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.393035	
mm_142306.1	chr17	42742054	42742254	-	1	NA	NA	NA	25	NM_001033493	435529	Mm.136350	NM_001033493	ENSMUSG00000057899	Adgrf2	Gpr111|PGR20	adhesion G protein-coupled receptor F2	protein-coding	0.025000	0.582090	
mm_145353.1	chr18	56572921	56573121	+	1	NA	NA	NA	-82	NM_001127338	110695	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	0.135000	0.726368	
mm_144097.1	chr18	3383143	3383343	+	1	NA	NA	NA	18	NM_029402	71745	Mm.291707	NM_029402	ENSMUSG00000024231	Cul2	1300003D18Rik|4932411N15Rik|AI327301|mKIAA4106	cullin 2	protein-coding	0.120000	0.736318	
mm_107474.1	chr12	37880224	37880424	+	1	NA	NA	NA	-381	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	0.035000	0.532338	
mm_48995.1	chr6	4756499	4756699	+	1	NA	NA	NA	9293	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.025000	0.502488	
mm_29395.1	chr3	108904403	108904603	-	1	NA	NA	NA	7201	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.075000	0.542289	
mm_61953.1	chr7	90207652	90207852	+	1	NA	NA	NA	57680	NM_029256	75338	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.015000	0.427861	22(ACTTATAAAGCC,+,0.00)
mm_98337.1	chr11	90883223	90883423	+	1	NA	NA	NA	78632	NR_045956	73922	Mm.233289	NR_045956	ENSMUSG00000085940	4930405D11Rik	-	RIKEN cDNA 4930405D11 gene	ncRNA	0.005000	0.388060	
mm_50591.1	chr6	49062003	49062203	+	1	NA	NA	NA	-11692	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.015000	0.338308	
mm_7382.1	chr1	107387328	107387528	-	1	NA	NA	NA	25114	NM_025867	66957	Mm.12638	NM_025867	ENSMUSG00000026327	Serpinb11	2310046M08Rik|AU015399	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	protein-coding	0.010000	0.457711	
mm_48980.1	chr6	4755276	4755476	+	1	NA	NA	NA	8070	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.075000	0.611940	
mm_52443.1	chr6	113638414	113638614	+	1	NA	NA	NA	47	NM_001113553	108960	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.100000	0.681592	-24(CCTTTACTAGGG,+,0.00)
mm_36070.1	chr4	57951778	57951978	-	1	NA	NA	NA	4533	NM_011660	22166	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.030000	0.527363	
mm_152972.1	chr19	29386762	29386962	-	1	NA	NA	NA	19424	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.000000	0.402985	
mm_100329.1	chr11	118212153	118212353	+	1	NA	NA	NA	489	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.005000	0.472637	
mm_133255.1	chr16	77329267	77329467	+	1	NA	NA	NA	39	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.035000	0.532338	
mm_51329.1	chr6	72356016	72356216	+	1	NA	NA	NA	633	NM_144916	232086	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	0.015000	0.611940	
mm_38953.1	chr4	150569987	150570187	-	1	NA	NA	NA	82087	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.035000	0.562189	
mm_148951.1	chr19	7270045	7270245	+	1	NA	NA	NA	1866	NM_001320554	104383	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.020000	0.532338	
mm_57882.1	chr6	131315948	131316148	-	1	NA	NA	NA	-2221	NM_172891	243659	Mm.20114	NM_172891	ENSMUSG00000032899	Styk1	9130025L13|AI326477|Nok	serine/threonine/tyrosine kinase 1	protein-coding	0.000000	0.422886	
mm_97865.1	chr11	83116912	83117112	+	1	NA	NA	NA	167	NM_011407	20555	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0.030000	0.577114	
mm_47498.1	chr5	124034434	124034634	-	1	NA	NA	NA	-2274	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.030000	0.507463	
mm_87112.1	chr10	33233761	33233961	+	1	NA	NA	NA	22496	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.005000	0.402985	
mm_136341.1	chr16	92603093	92603293	-	1	NA	NA	NA	94136	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.015000	0.422886	
mm_148735.1	chr19	5884669	5884869	+	1	NA	NA	NA	6303	NM_134154	107375	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0.005000	0.552239	
mm_159459.1	chr3	153973505	153973705	+	1	NA	NA	NA	169	NM_001081263	242259	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0.130000	0.746269	
mm_160319.1	chr7	143094462	143094662	-	1	NA	NA	NA	80	NM_020277	56843	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	0.005000	0.547264	
mm_135374.1	chr16	44106095	44106295	-	1	NA	NA	NA	32824	NM_007508	11964	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.020000	0.417910	
mm_48591.1	chr5	143894985	143895185	-	1	NA	NA	NA	-18	NM_001310772	66729	Mm.439817	NM_025732	ENSMUSG00000029607	Ankrd61	4921520G13Rik	ankyrin repeat domain 61	protein-coding	0.010000	0.358209	
mm_27722.1	chr3	69004272	69004472	-	1	NA	NA	NA	198	NM_026641	68259	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	0.025000	0.497512	
mm_34877.1	chr4	155563732	155563932	+	1	NA	NA	NA	17	NM_001159637	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.110000	0.726368	
mm_75875.1	chr8	70764887	70765087	-	1	NA	NA	NA	1676	NM_023065	65972	Mm.30241	NM_023065	ENSMUSG00000031838	Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	0.030000	0.567164	
mm_48179.1	chr5	137330973	137331173	-	1	NA	NA	NA	2509	NM_031406	83704	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	0.020000	0.547264	
mm_95162.1	chr11	36962290	36962490	+	1	NA	NA	NA	-18149	NM_011856	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.000000	0.318408	
mm_115790.1	chr13	19337232	19337432	-	1	NA	NA	NA	58481	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.383085	
mm_35252.1	chr4	19877715	19877915	-	1	NA	NA	NA	44751	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.025000	0.427861	
mm_29756.1	chr3	127161970	127162170	-	1	NA	NA	NA	765	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.050000	0.646766	
mm_31112.1	chr4	42922157	42922357	+	1	NA	NA	NA	5006	NM_172690	230085	Mm.240965	NM_172690	ENSMUSG00000036062	Phf24	GINIP|N28178	PHD finger protein 24	protein-coding	0.010000	0.457711	72(GTATATTAAAGC,-,0.00)
mm_112624.1	chr13	15807142	15807342	+	1	NA	NA	NA	-1	NR_046131	328190	Mm.446957	NR_046131		A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0.010000	0.482587	
mm_1688.1	chr1	75028557	75028757	+	1	NA	NA	NA	17982	NM_029342	75570	Mm.442409	NM_029342	ENSMUSG00000026162	Nhej1	1700029B21Rik|XLF|cernunnos	nonhomologous end-joining factor 1	protein-coding	0.035000	0.487562	-34(TTCTATAAAAGT,-,0.00)
mm_76316.1	chr8	84663838	84664038	-	1	NA	NA	NA	-1086	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.025000	0.482587	-48(GTTTCTTAAAGG,-,0.00),-45(TCTTAAAGGGCC,+,0.00)
mm_114507.1	chr13	70872303	70872503	+	1	NA	NA	NA	-10545	NM_029873	77166	Mm.159859	NM_029873	ENSMUSG00000021600	8030423J24Rik	-	RIKEN cDNA 8030423J24 gene	protein-coding	0.000000	0.477612	
mm_35539.1	chr4	41316613	41316813	-	1	NA	NA	NA	-1812	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.015000	0.507463	
mm_119568.1	chr14	49724531	49724731	+	1	NA	NA	NA	58736	NM_026142	67419	Mm.318710	NM_026142	ENSMUSG00000036242	3632451O06Rik	AU067705	RIKEN cDNA 3632451O06 gene	protein-coding	0.010000	0.442786	
mm_134377.1	chr16	17147484	17147684	-	1	NA	NA	NA	-355	NM_001306169	76872	Mm.101656	NM_029779	ENSMUSG00000022768	Ccdc116	4930432J16Rik	coiled-coil domain containing 116	protein-coding	0.055000	0.597015	
mm_82042.1	chr9	122151196	122151396	+	1	NA	NA	NA	34030	NM_133741	20623	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0.005000	0.248756	10(GCCTTTATAGTT,+,0.00)
mm_149288.1	chr19	10648130	10648330	+	1	NA	NA	NA	-177	NR_045316	75096	Mm.399287	NR_045316		4930524O05Rik	-	RIKEN cDNA 4930524O05 gene	ncRNA	0.015000	0.547264	
mm_27600.1	chr3	59153370	59153570	-	1	NA	NA	NA	22	NM_001287119	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.015000	0.442786	
mm_69778.1	chr7	141017913	141018113	-	1	NA	NA	NA	-1121	NM_001033632	213002	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.000000	0.512438	
mm_164073.1	chr14	120418169	120418369	+	1	NA	NA	NA	-60192	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.005000	0.492537	
mm_99340.1	chr11	101468264	101468464	+	1	NA	NA	NA	26	NM_009708	11858	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn	Rho family GTPase 2	protein-coding	0.100000	0.716418	
mm_87914.1	chr10	62362241	62362441	+	1	NA	NA	NA	17567	NM_010438	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.020000	0.552239	
mm_95125.1	chr11	34091136	34091336	+	1	NA	NA	NA	44035	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.025000	0.333333	
mm_118424.1	chr14	7924141	7924341	+	1	NA	NA	NA	69941	NM_007870	13421	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.050000	0.582090	
mm_79093.1	chr9	46242698	46242898	+	1	NA	NA	NA	1954	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.060000	0.611940	
mm_103371.1	chr11	75297775	75297975	-	1	NA	NA	NA	50508	NM_001164223	68275	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0.015000	0.447761	
mm_67650.1	chr7	84689708	84689908	-	1	NA	NA	NA	168	NR_038175	72495	Mm.382914	NR_038175	ENSMUSG00000085236	2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA	0.130000	0.731343	
mm_39133.1	chr4	155154716	155154916	-	1	NA	NA	NA	67719	NM_011385	20481	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.015000	0.437811	
mm_125231.1	chr15	34141046	34141246	+	1	NA	NA	NA	58427	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.010000	0.402985	
mm_26441.1	chr3	142624539	142624739	+	1	NA	NA	NA	-693	NR_105802	102465200		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.005000	0.497512	
mm_162998.1	chr11	30657265	30657465	+	1	NA	NA	NA	-7969	NM_029344	75572	Mm.390319	NM_029344	ENSMUSG00000060923	Acyp2	2310004B09Rik	acylphosphatase 2, muscle type	protein-coding	0.005000	0.407960	
mm_49247.1	chr6	17307675	17307875	+	1	NA	NA	NA	135	NM_001243064	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.045000	0.552239	
mm_101822.1	chr11	46698727	46698927	-	1	NA	NA	NA	3	NM_001161355	171284	Mm.234654	NM_134249	ENSMUSG00000040413	Timd2	AA816106|AU019358|AU019662|C78111|G9D3|TIM-2|Tim2	T cell immunoglobulin and mucin domain containing 2	protein-coding	0.010000	0.407960	
mm_152082.1	chr19	6870587	6870787	-	1	NA	NA	NA	-12476	NM_001081291	78317	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.005000	0.402985	
mm_63377.1	chr7	127212535	127212735	+	1	NA	NA	NA	1027	NM_016754	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.035000	0.567164	
mm_129138.1	chr15	76199778	76199978	-	1	NA	NA	NA	-43	NM_001163549	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.030000	0.651741	
mm_57837.1	chr6	129465396	129465596	-	1	NA	NA	NA	7283	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.025000	0.437811	-48(CCGTATTAATGC,-,0.00)
mm_6141.1	chr1	64812880	64813080	-	1	NA	NA	NA	-75230	NM_022721	14367	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0.010000	0.482587	-25(CCATTTCAAGCC,+,0.00)
mm_118230.1	chr13	111489683	111489883	-	1	NA	NA	NA	258	NM_028487	73274	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.060000	0.626866	
mm_84513.1	chr9	67033280	67033480	-	1	NA	NA	NA	10491	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.005000	0.442786	
mm_74897.1	chr8	25159570	25159770	-	1	NA	NA	NA	-437	NR_106187	102467006		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA	0.055000	0.582090	
mm_161267.1	chr14	6889766	6889966	-	1	NA	NA	NA	-132809	NM_001309401	100041151	Mm.396155	NM_001309401	ENSMUSG00000091754	Gm3636	100042043	predicted gene 3636	protein-coding	0.115000	0.756219	
mm_146749.1	chr18	16690442	16690642	-	1	NA	NA	NA	118704	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.005000	0.338308	
mm_163995.1	chr14	64440376	64440576	-	1	NA	NA	NA	550	NM_001253715	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.045000	0.611940	
mm_111655.1	chr12	102860201	102860401	-	1	NA	NA	NA	18105	NM_172806	238386	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	0.000000	0.303483	
mm_46698.1	chr5	110108079	110108279	-	1	NA	NA	NA	18	NM_145147	107999	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	0.135000	0.716418	
mm_155225.1	chrX	57066072	57066272	+	1	NA	NA	NA	12338	NM_029371	72459	Mm.2152	NM_028242	ENSMUSG00000067873	Htatsf1	1600023H17Rik|2600017A12Rik|2700077B20Rik|TAT-SF1	HIV TAT specific factor 1	protein-coding	0.005000	0.427861	
mm_147366.1	chr18	43438119	43438319	-	1	NA	NA	NA	67	NM_001291455	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.070000	0.666667	
mm_138160.1	chr17	34257783	34257983	+	1	NA	NA	NA	-5344	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.015000	0.482587	
mm_95781.1	chr11	54909798	54909998	+	1	NA	NA	NA	7044	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.015000	0.482587	
mm_3112.1	chr1	134560124	134560324	+	1	NA	NA	NA	46	NM_152895	75605	Mm.28995	NM_152895	ENSMUSG00000042207	Kdm5b	2010009J12Rik|2210016I17Rik|AW556288|D1Ertd202e|Jarid1b|PLU-1|PUT1|Plu1|RBBP2H1A|Rb-Bp2|mKIAA4034	lysine (K)-specific demethylase 5B	protein-coding	0.115000	0.656716	
mm_109098.1	chr12	105001123	105001323	+	1	NA	NA	NA	-2546	NM_001042699	212073	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.010000	0.482587	
mm_131580.1	chr16	18426333	18426533	+	1	NA	NA	NA	16	NM_013711	26462	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0.130000	0.741294	
mm_140166.1	chr17	80290143	80290343	+	1	NA	NA	NA	31	NM_194269	378462	Mm.45208	NM_194269	ENSMUSG00000045257	Morn2	Mopt	MORN repeat containing 2	protein-coding	0.075000	0.646766	
mm_18976.1	chr2	76846413	76846613	-	1	NA	NA	NA	136034	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.010000	0.358209	
mm_69724.1	chr7	140769128	140769328	-	1	NA	NA	NA	5396	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.025000	0.532338	
mm_88116.1	chr10	69212586	69212786	+	1	NA	NA	NA	29	NM_001081347	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.060000	0.631841	
mm_155243.1	chrX	57223326	57223526	+	1	NA	NA	NA	11283	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.045000	0.532338	
mm_78790.1	chr9	44043312	44043512	+	1	NA	NA	NA	28	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.040000	0.651741	
mm_164262.1	chr15	100674367	100674567	-	1	NA	NA	NA	-4967	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.000000	0.437811	74(CCTTAAATACAG,+,0.00)
mm_81476.1	chr9	109931774	109931974	+	1	NA	NA	NA	100	NM_008633	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.105000	0.726368	
mm_154331.1	chrM	3018	3218	+	1	NA	NA	NA	NA	NA									0.015000	0.343284	
mm_121567.1	chr14	122638270	122638470	+	1	NA	NA	NA	104042	NM_144844	110821	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.005000	0.388060	
mm_136521.1	chr16	97459068	97459268	-	1	NA	NA	NA	3737	NM_010846	17857	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.005000	0.452736	
mm_125992.1	chr15	76354383	76354583	+	1	NA	NA	NA	3189	NM_026859	68877	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	0.035000	0.557214	
mm_88015.1	chr10	67184559	67184759	+	1	NA	NA	NA	-1091	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.010000	0.437811	
mm_113296.1	chr13	30659815	30660015	+	1	NA	NA	NA	-144	NM_001037955	105352	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.145000	0.761194	
mm_126418.1	chr15	80320060	80320260	+	1	NA	NA	NA	32922	NM_001044308	239556	Mm.291058	NM_001044308	ENSMUSG00000022416	Cacna1i	Ca(V)3.3	calcium channel, voltage-dependent, alpha 1I subunit	protein-coding	0.010000	0.621891	
mm_26976.1	chr3	25144160	25144360	-	1	NA	NA	NA	-360254	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.140000	0.781095	
mm_125470.1	chr15	54410556	54410756	+	1	NA	NA	NA	-118	NM_173422	239447	Mm.82400	NM_173422	ENSMUSG00000038591	Colec10	CL-L1	collectin sub-family member 10	protein-coding	0.005000	0.388060	
mm_151228.1	chr19	53717875	53718075	+	1	NA	NA	NA	40669	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.010000	0.432836	
mm_65883.1	chr7	29799775	29799975	-	1	NA	NA	NA	15085	NM_013705	22693	Mm.292690	NM_013705	ENSMUSG00000047473	Zfp30	2610306P15Rik|Zfp-30	zinc finger protein 30	protein-coding	0.015000	0.552239	
mm_126835.1	chr15	89020210	89020410	+	1	NA	NA	NA	37316	NM_031260	83456	Mm.358791	NM_031260	ENSMUSG00000015365	Mov10l1	CHAMP|Csm	Moloney leukemia virus 10-like 1	protein-coding	0.025000	0.507463	
mm_140249.1	chr17	84183668	84183868	+	1	NA	NA	NA	4179	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.010000	0.522388	
mm_57616.1	chr6	128200461	128200661	-	1	NA	NA	NA	-16758	NR_077223	330427	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	0.090000	0.676617	
mm_40560.1	chr5	61806608	61806808	+	1	NA	NA	NA	-2135	NM_019468	14380	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	0.005000	0.318408	
mm_95214.1	chr11	43681949	43682149	+	1	NA	NA	NA	51	NM_001164231	70802	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	0.125000	0.721393	
mm_156432.1	chrX	141475327	141475527	+	1	NA	NA	NA	8	NM_001163155	12830	Mm.286892	NM_007736	ENSMUSG00000031274	Col4a5	-	collagen, type IV, alpha 5	protein-coding	0.045000	0.582090	
mm_112765.1	chr13	19356440	19356640	+	1	NA	NA	NA	39273	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.020000	0.502488	
mm_80764.1	chr9	95559281	95559481	+	1	NA	NA	NA	-436	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.130000	0.746269	
mm_54926.1	chr6	48048414	48048614	-	1	NA	NA	NA	-400	NM_001081382	72306	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	0.095000	0.686567	
mm_162181.1	chrX	102854516	102854716	-	1	NA	NA	NA	0	NM_001142691	71083	Mm.50914	NM_001142691	ENSMUSG00000067562	Dmrtc1c1	4933424F23Rik|Dmrt8.3|Dmrtc1c	DMRT-like family C1c1	protein-coding	0.030000	0.621891	
mm_170221.1	chr17	79062910	79063110	-	1	NA	NA	NA	11104	NM_001316729	70536	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	0.000000	0.522388	
mm_127649.1	chr15	102487828	102488028	+	1	NA	NA	NA	17296	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.005000	0.432836	
mm_94250.1	chr11	3330723	3330923	+	1	NA	NA	NA	92	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.025000	0.587065	
mm_17536.1	chr2	29772094	29772294	-	1	NA	NA	NA	10666	NM_001177392	433416	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	OTTMUSG00000012686	predicted gene 13547	protein-coding	0.010000	0.457711	
mm_34463.1	chr4	148140633	148140833	+	1	NA	NA	NA	243	NM_027985	71890	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding	0.095000	0.686567	
mm_130328.1	chr15	97719503	97719703	-	1	NA	NA	NA	1547	NM_008902	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.035000	0.557214	
mm_151901.1	chr19	5799188	5799388	-	1	NA	NA	NA	-3307	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.005000	0.437811	
mm_63230.1	chr7	126457035	126457235	+	1	NA	NA	NA	5938	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.010000	0.552239	
mm_137256.1	chr17	24549954	24550154	+	1	NA	NA	NA	104	NM_013630	18763	Mm.30435	NM_013630	ENSMUSG00000032855	Pkd1	PC1|mFLJ00285	polycystic kidney disease 1 homolog	protein-coding	0.100000	0.741294	
mm_68356.1	chr7	106510819	106511019	-	1	NA	NA	NA	-69846	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.025000	0.427861	
mm_157668.1	chrX	59062796	59062996	-	1	NA	NA	NA	34840	NR_030574	100124476		NR_030574	ENSMUSG00000070110	Mir504	Mirn504|mir-504|mmu-mir-504	microRNA 504	ncRNA	0.010000	0.462687	
mm_71458.1	chr8	46526373	46526573	+	1	NA	NA	NA	-25596	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.010000	0.497512	
mm_151934.1	chr19	5800307	5800507	-	1	NA	NA	NA	2265	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.015000	0.472637	
mm_16738.1	chr2	9304950	9305150	-	1	NA	NA	NA	115535	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.000000	0.412935	
mm_48478.1	chr5	141000511	141000711	-	1	NA	NA	NA	-15	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.020000	0.522388	
mm_158656.1	chrX	156235135	156235335	-	1	NA	NA	NA	-304248	NR_033598	74941	Mm.484588	NR_033598		4930503H13Rik	-	gem (nuclear organelle) associated protein 8 pseudogene	pseudo	0.000000	0.333333	
mm_76518.1	chr8	87470545	87470745	-	1	NA	NA	NA	1947	NM_019626	12404	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0.065000	0.597015	
mm_22954.1	chr3	32397065	32397265	+	1	NA	NA	NA	-31500	NM_009517	22401	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0.085000	0.636816	
mm_69315.1	chr7	128459624	128459824	-	1	NA	NA	NA	1789	NM_009383	21843	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.005000	0.308458	
mm_59036.1	chr7	19320224	19320424	+	1	NA	NA	NA	-10279	NM_001347586	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.035000	0.507463	
mm_111672.1	chr12	103338201	103338401	-	1	NA	NA	NA	17700	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.020000	0.542289	
mm_44158.1	chr5	150522558	150522758	+	1	NA	NA	NA	37	NM_001081001	12190	Mm.236256	NM_009765	ENSMUSG00000041147	Brca2	Fancd1|RAB163	breast cancer 2, early onset	protein-coding	0.165000	0.751244	
mm_5727.1	chr1	44118687	44118887	-	1	NA	NA	NA	-14	NM_023645	72050	Mm.281714	NM_023645	ENSMUSG00000026047	Kdelc1	1810049A15Rik|5730416C13Rik|EP58|Kdel1	KDEL (Lys-Asp-Glu-Leu) containing 1	protein-coding	0.035000	0.507463	
mm_6417.1	chr1	73751773	73751973	-	1	NA	NA	NA	103702	NR_105769	102465179		NR_105769	ENSMUSG00000098504	Mir6351	Gm27936|mmu-mir-6351	microRNA 6351	ncRNA	0.000000	0.393035	
mm_169998.1	chr1	71640238	71640438	-	1	NA	NA	NA	12896	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.025000	0.542289	
mm_68382.1	chr7	109175264	109175464	-	1	NA	NA	NA	-157	NM_001302205	109594	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0.060000	0.572139	
mm_41450.1	chr5	90905350	90905550	+	1	NA	NA	NA	1551	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.005000	0.208955	-19(TCTTAAAAGGTC,+,0.00)
mm_45267.1	chr5	64467842	64468042	-	1	NA	NA	NA	0	NR_040681	69999	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.000000	0.437811	
mm_59189.1	chr7	24475212	24475412	+	1	NA	NA	NA	-6711	NM_153112	260299	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	0.055000	0.631841	
mm_166032.1	chr4	126753201	126753401	-	1	NA	NA	NA	128	NM_011986	26562	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	0.105000	0.681592	
mm_169124.1	chr13	53160337	53160537	-	1	NA	NA	NA	125672	NM_013846	26564	Mm.342774	NM_013846	ENSMUSG00000021464	Ror2	Ntrkr2|mRor2	receptor tyrosine kinase-like orphan receptor 2	protein-coding	0.000000	0.497512	-37(GCTTTAAGACCC,+,0.00)
mm_51294.1	chr6	72305905	72306105	+	1	NA	NA	NA	1395	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.010000	0.507463	-18(ACCTATATAAGT,-,0.00)
mm_104823.1	chr11	99003461	99003661	-	1	NA	NA	NA	-20545	NM_178596	353155	Mm.453253	NM_178596	ENSMUSG00000047197	Gjd3	Gja11|Gjc1|cx30.2	gap junction protein, delta 3	protein-coding	0.005000	0.383085	
mm_119788.1	chr14	54192208	54192408	+	1	NA	NA	NA	61621	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.025000	0.507463	
mm_68242.1	chr7	105399907	105400107	-	1	NA	NA	NA	47	NM_001242364	74349	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	0.140000	0.756219	
mm_113774.1	chr13	44874266	44874466	+	1	NA	NA	NA	127730	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.015000	0.482587	32(CTCTCTAAAAGG,-,0.00)
mm_149103.1	chr19	8942432	8942632	+	1	NA	NA	NA	612	NM_011842	23942	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	0.105000	0.666667	
mm_78202.1	chr9	21380512	21380712	+	1	NA	NA	NA	12080	NM_001277322	16201	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.005000	0.417910	
mm_133628.1	chr16	91646983	91647183	+	1	NA	NA	NA	-111	NM_010256	14450	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	0.085000	0.666667	
mm_157346.1	chrX	36979571	36979771	-	1	NA	NA	NA	10024	NM_001177324	56526	Mm.260036	NM_019942	ENSMUSG00000050379	Sept6	2810035H17Rik|C920001C06Rik|Sep6|mKIAA0128	septin 6	protein-coding	0.010000	0.338308	
mm_128046.1	chr15	25413663	25413863	-	1	NA	NA	NA	1	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.165000	0.791045	
mm_35790.1	chr4	46506736	46506936	-	1	NA	NA	NA	17507	NM_053179	94181	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.035000	0.592040	13(GCCTTTATAGTG,+,0.00)
mm_92753.1	chr10	81025440	81025640	-	1	NA	NA	NA	-163	NM_145217	208666	Mm.44995	NM_145217	ENSMUSG00000043670	Diras1	Di-Ras1|Gbts1|RIG	DIRAS family, GTP-binding RAS-like 1	protein-coding	0.055000	0.671642	
mm_80387.1	chr9	75625310	75625510	+	1	NA	NA	NA	-322	NM_027309	70082	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	0.050000	0.636816	
mm_167261.1	chr8	26717220	26717420	+	1	NA	NA	NA	107103	NR_045904	72316	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.000000	0.343284	
mm_46365.1	chr5	103377235	103377435	-	1	NA	NA	NA	-47857	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.000000	0.487562	
mm_149808.1	chr19	23758919	23759119	+	1	NA	NA	NA	143	NM_177034	319924	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.115000	0.746269	
mm_48759.1	chr5	148330015	148330215	-	1	NA	NA	NA	62700	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.025000	0.537313	
mm_56533.1	chr6	99585158	99585358	-	1	NA	NA	NA	-64265	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.000000	0.303483	18(GTATATATAGCC,+,0.00)
mm_139830.1	chr17	69127304	69127504	+	1	NA	NA	NA	-29406	NM_013813	13823	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.025000	0.547264	
mm_13437.1	chr2	105126519	105126719	+	1	NA	NA	NA	90	NM_144783	22431	Mm.389339	NM_144783	ENSMUSG00000016458	Wt1	D630046I19Rik|Wt-1	Wilms tumor 1 homolog	protein-coding	0.045000	0.666667	
mm_156413.1	chrX	140664613	140664813	+	1	NA	NA	NA	-13315	NM_011845	23947	Mm.131097	NM_011845	ENSMUSG00000000266	Mid2	FXY2|Trim1	midline 2	protein-coding	0.040000	0.611940	
mm_4771.1	chr1	182564902	182565102	+	1	NA	NA	NA	-5	NM_001145806	170725	Mm.189201	NM_130890	ENSMUSG00000038599	Capn8	nCL-2|nCL-2'	calpain 8	protein-coding	0.010000	0.577114	-33(CTGCCTTAAAGG,-,0.00),-32(TGCCTTAAAGGG,-,0.00),-31(GCCTTAAAGGGC,+,0.00),-30(CCTTAAAGGGCA,+,0.00)
mm_11989.1	chr2	55437096	55437296	+	1	NA	NA	NA	1226	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.060000	0.592040	
mm_132259.1	chr16	32755537	32755737	+	1	NA	NA	NA	19751	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.005000	0.482587	
mm_112089.1	chr12	112674694	112674894	-	1	NA	NA	NA	90	NM_001331107	11651	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.020000	0.601990	
mm_16686.1	chr2	6884493	6884693	-	1	NA	NA	NA	403	NM_010160	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.020000	0.492537	
mm_76050.1	chr8	77689023	77689223	-	1	NA	NA	NA	35329	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	0.020000	0.482587	
mm_138568.1	chr17	35379523	35379723	+	1	NA	NA	NA	6	NM_001143689	15015	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	0.075000	0.611940	
mm_18784.1	chr2	73659932	73660132	-	1	NA	NA	NA	391	NM_175752	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	0.040000	0.532338	
mm_67457.1	chr7	80402650	80402850	-	1	NA	NA	NA	62	NM_011046	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.205000	0.860697	
mm_165177.1	chr2	27714187	27714387	-	1	NA	NA	NA	3704	NM_001290482	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.020000	0.552239	
mm_20817.1	chr2	144527432	144527632	-	1	NA	NA	NA	-134	NM_172859	241688	Mm.442156	NM_172859	ENSMUSG00000037259	Dzank1	2810039F03Rik|6330439K17Rik|6430408C01|AI851115|Ankrd64	double zinc ribbon and ankyrin repeat domains 1	protein-coding	0.050000	0.582090	
mm_8459.1	chr1	153186031	153186231	-	1	NA	NA	NA	316	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.065000	0.597015	
mm_4195.1	chr1	171225631	171225831	+	1	NA	NA	NA	677	NM_013474	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.010000	0.467662	
mm_81566.1	chr9	110419708	110419908	+	1	NA	NA	NA	0	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.005000	0.477612	14(CTACATAAAAGG,-,0.00)
mm_78127.1	chr9	20652023	20652223	+	1	NA	NA	NA	-7	NM_023371	23988	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	0.100000	0.676617	
mm_39745.1	chr5	29569372	29569572	+	1	NA	NA	NA	230	NM_133907	100763	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	0.135000	0.746269	
mm_2444.1	chr1	98693386	98693586	+	1	NA	NA	NA	272362	NM_027584	70866	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding	0.015000	0.412935	
mm_154920.1	chrX	23115494	23115694	+	1	NA	NA	NA	151208	NM_001310466	67455	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	0.005000	0.393035	
mm_106415.1	chr11	119133696	119133896	-	1	NA	NA	NA	20341	NR_105899	102465563		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA	0.010000	0.572139	
mm_137935.1	chr17	32658931	32659131	+	1	NA	NA	NA	-452	NM_001101588	631304	Mm.328950	NM_001101588	ENSMUSG00000090700	Cyp4f40	EG631304	cytochrome P450, family 4, subfamily f, polypeptide 40	protein-coding	0.005000	0.542289	
mm_159127.1	chr2	74659417	74659617	-	1	NA	NA	NA	40	NM_007967	14029	Mm.25365	NM_007967	ENSMUSG00000001815	Evx2	Evx-2	even-skipped homeobox 2	protein-coding	0.035000	0.497512	
mm_29377.1	chr3	108797953	108798153	-	1	NA	NA	NA	42449	NM_011504	20912	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.010000	0.343284	
mm_56153.1	chr6	87843953	87844153	-	1	NA	NA	NA	-5294	NM_133934	57905	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	0.020000	0.457711	
mm_87676.1	chr10	59136781	59136981	+	1	NA	NA	NA	84966	NM_001024911	103080	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	0.020000	0.472637	
mm_128573.1	chr15	57696005	57696205	-	1	NA	NA	NA	1438	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.030000	0.557214	
mm_45644.1	chr5	76951120	76951320	-	1	NA	NA	NA	-191	NM_025939	67054	Mm.182931	NM_025939	ENSMUSG00000029247	Paics	2610511I09Rik|ADE2H1|AIRC|PAIS	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	protein-coding	0.100000	0.656716	
mm_158355.1	chrX	134595137	134595337	-	1	NA	NA	NA	5768	NM_013463	11605	Mm.1114	NM_013463	ENSMUSG00000031266	Gla	Ags	galactosidase, alpha	protein-coding	0.015000	0.388060	
mm_151652.1	chr19	4118420	4118620	-	1	NA	NA	NA	3055	NM_001276284	11632	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.005000	0.462687	
mm_95445.1	chr11	50236908	50237108	+	1	NA	NA	NA	1524	NM_001313968	17001	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.095000	0.646766	
mm_88639.1	chr10	79927250	79927450	+	1	NA	NA	NA	9	NM_001288625	13496	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.105000	0.676617	
mm_122319.1	chr14	36935450	36935650	-	1	NA	NA	NA	18	NM_028407	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.020000	0.447761	
mm_127373.1	chr15	100790350	100790550	+	1	NA	NA	NA	9196	NM_001347102	59033	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0.030000	0.517413	
mm_153733.1	chr19	44410362	44410562	-	1	NA	NA	NA	-2753	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.055000	0.557214	
mm_7097.1	chr1	88701934	88702134	-	1	NA	NA	NA	157	NM_177305	320982	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.120000	0.716418	
mm_86503.1	chr10	7212248	7212448	+	1	NA	NA	NA	-111	NM_172546	215748	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.070000	0.626866	
mm_89462.1	chr10	93309788	93309988	+	1	NA	NA	NA	1271	NM_001322268	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.050000	0.457711	
mm_114241.1	chr13	56623464	56623664	+	1	NA	NA	NA	13961	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.005000	0.552239	
mm_3671.1	chr1	153665397	153665597	+	1	NA	NA	NA	-176	NM_001347115	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding	0.015000	0.592040	
mm_138243.1	chr17	34564253	34564453	+	1	NA	NA	NA	58	NM_010929	18132	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	0.020000	0.641791	
mm_28736.1	chr3	95736602	95736802	-	1	NA	NA	NA	-1729	NR_105981	102466787		NR_105981	ENSMUSG00000098737	Mir7014	Gm27837|mmu-mir-7014	microRNA 7014	ncRNA	0.040000	0.631841	
mm_119021.1	chr14	30009003	30009203	+	1	NA	NA	NA	103	NM_001136240	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.110000	0.721393	
mm_72668.1	chr8	84903489	84903689	+	1	NA	NA	NA	1661	NM_010635	16596	Mm.4847	NM_010635	ENSMUSG00000054191	Klf1	Eklf|Nan	Kruppel-like factor 1 (erythroid)	protein-coding	0.080000	0.646766	
mm_68601.1	chr7	116237674	116237874	-	1	NA	NA	NA	2	NM_001305186	233765	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.105000	0.731343	
mm_12584.1	chr2	73450501	73450701	+	1	NA	NA	NA	3288	NM_001289722	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.025000	0.532338	
mm_16474.1	chr2	180732150	180732350	+	1	NA	NA	NA	6911	NM_183161	228993	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	0.015000	0.572139	
mm_119205.1	chr14	32856724	32856924	+	1	NA	NA	NA	68	NM_178791	320736	Mm.187910	NM_178791	ENSMUSG00000050666	Vstm4	E130203B14Rik	V-set and transmembrane domain containing 4	protein-coding	0.115000	0.756219	
mm_42806.1	chr5	121748071	121748271	+	1	NA	NA	NA	36562	NM_009125	20239	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.005000	0.328358	
mm_49022.1	chr6	4759417	4759617	+	1	NA	NA	NA	12211	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.015000	0.412935	
mm_94465.1	chr11	6474894	6475094	+	1	NA	NA	NA	1082	NM_011221	19291	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0.080000	0.597015	
mm_99085.1	chr11	99417191	99417391	+	1	NA	NA	NA	4968	NM_010661	268482	Mm.436651	NM_010661	ENSMUSG00000020912	Krt12	AI835216|K12|Krt-12|Krt1-12	keratin 12	protein-coding	0.020000	0.422886	
mm_165583.1	chr3	29268428	29268628	+	1	NA	NA	NA	-148295	NR_030422	791072		NR_030422	ENSMUSG00000076120	Mir551b	Mirn551b|mir-551b	microRNA 551b	ncRNA	0.000000	0.303483	-64(TCCTCTAAAAGT,-,0.00)
mm_1941.1	chr1	86303132	86303332	+	1	NA	NA	NA	11	NM_145222	227327	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.105000	0.691542	
mm_53231.1	chr6	127233632	127233832	+	1	NA	NA	NA	74235	NR_073373	232386	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.050000	0.517413	
mm_151135.1	chr19	51792102	51792302	+	1	NA	NA	NA	-472095	NM_008386	16333	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding	0.030000	0.457711	
mm_89886.1	chr10	108543007	108543207	+	1	NA	NA	NA	157053	NM_203660	368203	Mm.452758	NM_203660		Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding	0.005000	0.527363	-32(GCTTTAAGACCC,+,0.00)
mm_106297.1	chr11	118218958	118219158	-	1	NA	NA	NA	-6316	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.015000	0.422886	
mm_46144.1	chr5	93192844	93193044	-	1	NA	NA	NA	13551	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.005000	0.278607	
mm_8356.1	chr1	150392952	150393152	-	1	NA	NA	NA	3	NM_001077237	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.085000	0.636816	
mm_163873.1	chr14	19419230	19419430	-	1	NA	NA	NA	183257	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.368159	
mm_139863.1	chr17	70521625	70521825	+	1	NA	NA	NA	-169	NM_001347414	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.005000	0.417910	55(GCATTTATGGCA,+,0.00)
mm_29403.1	chr3	108905425	108905625	-	1	NA	NA	NA	6179	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.005000	0.343284	-36(CCCTTTATGCCC,+,0.00)
mm_52909.1	chr6	122819845	122820045	+	1	NA	NA	NA	-239	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.165000	0.825871	
mm_146093.1	chr18	73859283	73859483	+	1	NA	NA	NA	-2	NM_027741	71263	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	0.025000	0.527363	
mm_4899.1	chr1	189785166	189785366	+	1	NA	NA	NA	56998	NM_008976	19250	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|OTTMUSG00000022087|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	0.020000	0.522388	
mm_142159.1	chr17	36111585	36111785	-	1	NA	NA	NA	-9	NM_001271005	667803	Mm.477808	NM_001271005		H2-T-ps	C920025E04Rik|H2-T11	histocompatibility 2, T region locus, pseudogene	protein-coding	0.030000	0.502488	
mm_34859.1	chr4	155546762	155546962	+	1	NA	NA	NA	-15530	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.000000	0.368159	
mm_102877.1	chr11	69409795	69409995	-	1	NA	NA	NA	3780	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.075000	0.631841	
mm_93092.1	chr10	89646929	89647129	-	1	NA	NA	NA	-25780	NM_182959	216227	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	0.040000	0.497512	
mm_123753.1	chr14	70195903	70196103	-	1	NA	NA	NA	-3757	NM_001271409	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.005000	0.582090	
mm_120830.1	chr14	75176538	75176738	+	1	NA	NA	NA	40213	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.005000	0.522388	
mm_65836.1	chr7	29213870	29214070	-	1	NA	NA	NA	63	NM_001164658	320225	Mm.349382	NM_001039721	ENSMUSG00000049676	Catsperg1	A230107C01Rik|Catsperg	catsper channel auxiliary subunit gamma 1	protein-coding	0.070000	0.587065	
mm_282.1	chr1	21262752	21262952	+	1	NA	NA	NA	22267	NM_010356	14859	Mm.394593	NM_010356	ENSMUSG00000025934	Gsta3	Gst2-3	glutathione S-transferase, alpha 3	protein-coding	0.015000	0.477612	
mm_9360.1	chr1	172198088	172198288	-	1	NA	NA	NA	8616	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.000000	0.477612	
mm_157923.1	chrX	79517255	79517455	-	1	NA	NA	NA	-70	NM_001099307	636104	Mm.459420	NM_001099307	ENSMUSG00000073077	Gm7173	EG636104	predicted gene 7173	protein-coding	0.055000	0.582090	53(CTCTTTAGAGGG,+,0.00)
mm_139636.1	chr17	57375925	57376125	+	1	NA	NA	NA	17339	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.462687	
mm_53288.1	chr6	128992913	128993113	+	1	NA	NA	NA	52	NR_015455	408064	Mm.172429	NR_015455		BC064078	-	cDNA sequence BC064078	ncRNA	0.010000	0.472637	
mm_6237.1	chr1	66945289	66945489	-	1	NA	NA	NA	-333	NM_021285	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.010000	0.432836	
mm_139809.1	chr17	66470642	66470842	+	1	NA	NA	NA	-20992	NM_001114098	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.025000	0.537313	
mm_15730.1	chr2	164189499	164189699	+	1	NA	NA	NA	959	NM_138684	192200	Mm.6433	NM_138684	ENSMUSG00000042845	Wfdc12	Swam2|WAP2	WAP four-disulfide core domain 12	protein-coding	0.005000	0.457711	
mm_32779.1	chr4	116708370	116708570	+	1	NA	NA	NA	-85	NM_025962	67096	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0.055000	0.507463	
mm_16125.1	chr2	170175951	170176151	+	1	NA	NA	NA	-33376	NM_001159683	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.020000	0.427861	
mm_53233.1	chr6	127446698	127446898	+	1	NA	NA	NA	-42	NM_001346513	101187	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.020000	0.447761	
mm_129672.1	chr15	81365248	81365448	-	1	NA	NA	NA	-4583	NM_011399	20524	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	0.025000	0.457711	
mm_124795.1	chr15	8168986	8169186	+	1	NA	NA	NA	-20	NM_001162906	73692	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0.110000	0.771144	
mm_103979.1	chr11	84823624	84823824	-	1	NA	NA	NA	-4209	NM_145433	217038	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik|ENSMUSG00000054212	mitochondrial rRNA methyltransferase 1	protein-coding	0.020000	0.592040	
mm_128915.1	chr15	73676352	73676552	-	1	NA	NA	NA	31053	NM_173365	239530	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	0.005000	0.502488	
mm_142234.1	chr17	37480944	37481144	-	1	NA	NA	NA	2485	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.005000	0.263682	
mm_167163.1	chr7	135716181	135716381	-	1	NA	NA	NA	98	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.145000	0.751244	
mm_148490.1	chr19	4153565	4153765	+	1	NA	NA	NA	-981	NM_016933	19265	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	0.030000	0.587065	
mm_145459.1	chr18	60238848	60239048	+	1	NA	NA	NA	26871	NM_001033767	240327	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.015000	0.517413	
mm_56497.1	chr6	99266272	99266472	-	1	NA	NA	NA	143	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.015000	0.527363	
mm_102062.1	chr11	52253818	52254018	-	1	NA	NA	NA	21923	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.035000	0.547264	
mm_126267.1	chr15	79109063	79109263	+	1	NA	NA	NA	180	NM_177461	27008	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	0.130000	0.761194	
mm_18660.1	chr2	70509180	70509380	-	1	NA	NA	NA	461	NM_025744	66748	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	0.155000	0.786070	
mm_20085.1	chr2	120731246	120731446	-	1	NA	NA	NA	171	NM_026891	68968	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	0.110000	0.716418	
mm_115345.1	chr13	112639371	112639571	+	1	NA	NA	NA	12839	NM_010029	13206	Mm.12818	NM_010029	ENSMUSG00000021758	Ddx4	AV206478|Mvh|VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding	0.010000	0.522388	
mm_129565.1	chr15	79546666	79546866	-	1	NA	NA	NA	-25	NM_199080	67040	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.110000	0.631841	
mm_116043.1	chr13	27247749	27247949	-	1	NA	NA	NA	5419	NM_008865	18776	Mm.37203	NM_008865	ENSMUSG00000038891	Prl3b1	Csh2|Ghd8|PL|Pl-2|Pl2|mPL-II|mplII	prolactin family 3, subfamily b, member 1	protein-coding	0.005000	0.427861	
mm_148263.1	chr18	80933966	80934166	-	1	NA	NA	NA	-8	NM_015805	50771	Mm.247138	NM_015805	ENSMUSG00000024566	Atp9b	AA934181|Atpc2b|IIb|MMR	ATPase, class II, type 9B	protein-coding	0.105000	0.641791	
mm_22596.1	chr3	13884846	13885046	+	1	NA	NA	NA	-61426	NM_001163329	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.005000	0.328358	
mm_1188.1	chr1	62703212	62703412	+	1	NA	NA	NA	-5	NM_001077406	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.115000	0.701493	44(GGCCTGAAAAGG,-,0.00)
mm_84629.1	chr9	70816887	70817087	-	1	NA	NA	NA	117821	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.010000	0.437811	
mm_70432.1	chr8	11556351	11556551	+	1	NA	NA	NA	-6	NM_011919	26356	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.135000	0.736318	
mm_121267.1	chr14	103098400	103098600	+	1	NA	NA	NA	504	NM_001347601	50789	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.010000	0.358209	
mm_157143.1	chrX	9460588	9460788	-	1	NA	NA	NA	8636	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.447761	
mm_97885.1	chr11	83291634	83291834	+	1	NA	NA	NA	35	NR_028363	613254	Mm.383758	NR_028363	ENSMUSG00000093483	AA465934	-	expressed sequence AA465934	ncRNA	0.075000	0.621891	
mm_95030.1	chr11	32031080	32031280	+	1	NA	NA	NA	29903	NM_001290681	18197	Mm.3304	NM_008741	ENSMUSG00000020297	Nsg2	-	neuron specific gene family member 2	protein-coding	0.005000	0.373134	
mm_102505.1	chr11	60727124	60727324	-	1	NA	NA	NA	39	NM_022009	14248	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	0.140000	0.746269	
mm_42835.1	chr5	122102809	122103009	+	1	NA	NA	NA	1929	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.020000	0.467662	58(TTTTTTAAACAC,+,0.00)
mm_66133.1	chr7	31073586	31073786	-	1	NA	NA	NA	3011	NM_008557	17178	Mm.263847	NM_008557	ENSMUSG00000057092	Fxyd3	Mat8	FXYD domain-containing ion transport regulator 3	protein-coding	0.000000	0.527363	
mm_55684.1	chr6	72616641	72616841	-	1	NA	NA	NA	7	NM_009444	22135	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	0.090000	0.661692	
mm_117266.1	chr13	64408752	64408952	-	1	NA	NA	NA	-23701	NM_053180	105278	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	0.005000	0.487562	
mm_31919.1	chr4	85379239	85379439	+	1	NA	NA	NA	173883	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.040000	0.442786	
mm_66285.1	chr7	37773436	37773636	-	1	NA	NA	NA	-3784	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.065000	0.467662	64(GACTTTAAATAG,-,0.00)
mm_46078.1	chr5	92325023	92325223	-	1	NA	NA	NA	2956	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.015000	0.467662	
mm_32342.1	chr4	104766220	104766420	+	1	NA	NA	NA	3	NM_001316671	110382	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding	0.030000	0.492537	
mm_57988.1	chr6	136171736	136171936	-	1	NA	NA	NA	1675	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.030000	0.477612	
mm_82195.1	chr9	123965342	123965542	+	1	NA	NA	NA	3250	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.010000	0.462687	-40(GCCTTTATATGG,+,0.00),-40(GCCTTTATATGG,-,0.00),-38(CTTTATATGGAA,+,0.00)
mm_20596.1	chr2	131179939	131180139	-	1	NA	NA	NA	28	NM_007682	12616	Mm.440169	NM_007682	ENSMUSG00000068267	Cenpb	CENP-B	centromere protein B	protein-coding	0.205000	0.860697	
mm_42731.1	chr5	120621353	120621553	+	1	NA	NA	NA	8323	NM_028041	71990	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0.020000	0.557214	
mm_64731.1	chr7	4709920	4710120	-	1	NA	NA	NA	15062	NM_001142792	330460	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	0.010000	0.457711	
mm_50561.1	chr6	49047833	49048033	+	1	NA	NA	NA	11415	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.030000	0.527363	
mm_169171.1	chr13	65639322	65639522	+	1	NA	NA	NA	360568	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.005000	0.417910	
mm_25535.1	chr3	115673926	115674126	+	1	NA	NA	NA	41029	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.025000	0.482587	
mm_93497.1	chr10	112271859	112272059	-	1	NA	NA	NA	836	NM_001025581	268345	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0.110000	0.686567	
mm_91000.1	chr10	14545101	14545301	-	1	NA	NA	NA	-165	NM_001002268	215798	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.125000	0.716418	
mm_116220.1	chr13	32898054	32898254	-	1	NA	NA	NA	-14	NM_173051	380839	Mm.250802	NM_173051	ENSMUSG00000079049	Serpinb1c	EIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1c	protein-coding	0.005000	0.557214	-37(TACTATAAAGGC,-,0.00)
mm_36892.1	chr4	107680709	107680909	-	1	NA	NA	NA	3353	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.015000	0.512438	
mm_68506.1	chr7	111082377	111082577	-	1	NA	NA	NA	553	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.145000	0.766169	
mm_129029.1	chr15	74958804	74959004	-	1	NA	NA	NA	3798	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.020000	0.537313	
mm_160522.1	chr9	35570271	35570471	+	1	NA	NA	NA	-302	NM_029762	76832	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	hydrolethalus syndrome 1	protein-coding	0.105000	0.701493	
mm_96809.1	chr11	69991536	69991736	+	1	NA	NA	NA	266	NM_019749	56486	Mm.272460	NM_019749	ENSMUSG00000018567	Gabarap	-	gamma-aminobutyric acid receptor associated protein	protein-coding	0.100000	0.666667	
mm_108353.1	chr12	80519126	80519326	+	1	NA	NA	NA	236	NM_001081421	108760	Mm.308296	NM_001081421	ENSMUSG00000021130	Galnt16	5730405L21Rik|AI415388|Galntl1|mpp-GalNAc-T16	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16	protein-coding	0.110000	0.691542	
mm_21193.1	chr2	155407732	155407932	-	1	NA	NA	NA	25976	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.000000	0.482587	
mm_130980.1	chr15	103344618	103344818	-	1	NA	NA	NA	-4632	NM_013866	29813	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.015000	0.557214	
mm_136269.1	chr16	91044397	91044597	-	1	NA	NA	NA	-118	NM_026110	67367	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.120000	0.691542	
mm_94474.1	chr11	6547185	6547385	+	1	NA	NA	NA	398	NM_001190343	216527	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0.060000	0.686567	
mm_141733.1	chr17	34120223	34120423	-	1	NA	NA	NA	-423	NR_037970	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.110000	0.721393	88(GCTTTTAGGGCA,+,0.00)
mm_22768.1	chr3	20198051	20198251	+	1	NA	NA	NA	24208	NR_105974	102465609		NR_105974	ENSMUSG00000099105	Mir7007	Gm27897|mmu-mir-7007	microRNA 7007	ncRNA	0.025000	0.477612	
mm_49415.1	chr6	28867758	28867958	+	1	NA	NA	NA	-36111	NM_138682	192198	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.005000	0.512438	
mm_9249.1	chr1	171388685	171388885	-	1	NA	NA	NA	-175	NM_001005508	226652	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	0.025000	0.547264	
mm_85568.1	chr9	107231814	107232014	-	1	NA	NA	NA	-5	NM_153413	208869	Mm.150259	NM_153413	ENSMUSG00000039716	Dock3	MOCA|PBP|mKIAA0299	dedicator of cyto-kinesis 3	protein-coding	0.190000	0.771144	
mm_143879.1	chr17	84272957	84273157	-	1	NA	NA	NA	-85110	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.010000	0.452736	
mm_154529.1	chrM	13485	13685	-	1	NA	NA	NA	NA	NA									0.020000	0.328358	
mm_161346.1	chr14	52491109	52491309	-	1	NA	NA	NA	-163	NM_020512	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.000000	0.328358	
mm_20134.1	chr2	121380844	121381044	-	1	NA	NA	NA	-4	NM_080459	140476	Mm.467475	NM_080459	ENSMUSG00000033498	Strc	DFNB16	stereocilin	protein-coding	0.015000	0.557214	
mm_17947.1	chr2	36136488	36136688	-	1	NA	NA	NA	116	NM_026434	67889	Mm.205937	NM_026434	ENSMUSG00000026889	Rbm18	2010004P11Rik|AU015530	RNA binding motif protein 18	protein-coding	0.120000	0.681592	
mm_120735.1	chr14	73165193	73165393	+	1	NA	NA	NA	22508	NR_033185	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.030000	0.507463	
mm_160105.1	chr7	23144166	23144366	-	1	NA	NA	NA	212	NM_001201364	100043665	Mm.335671	NM_001201364	ENSMUSG00000095683	Gm10662	ENSMUSG00000074296	predicted gene 10662	protein-coding	0.000000	0.358209	
mm_51803.1	chr6	88724396	88724596	+	1	NA	NA	NA	84	NM_011844	23945	Mm.272197	NM_011844	ENSMUSG00000033174	Mgll	AA589436|Magl|Mgl	monoglyceride lipase	protein-coding	0.155000	0.766169	
mm_73129.1	chr8	94923466	94923666	+	1	NA	NA	NA	-128	NM_001033468	382045	Mm.334726	NM_001033468	ENSMUSG00000061577	Adgrg5	Gm1109|Gpr114|PGR27	adhesion G protein-coupled receptor G5	protein-coding	0.020000	0.606965	45(GGCCAGAAAAGC,-,0.00)
mm_30787.1	chr4	19575448	19575648	+	1	NA	NA	NA	482	NM_025476	66302	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	0.045000	0.552239	
mm_161495.1	chr15	88712666	88712866	-	1	NA	NA	NA	21453	NM_001033274	223770	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	0.030000	0.527363	-90(GGGTATAAAAAC,-,0.00)
mm_90190.1	chr10	120174458	120174658	+	1	NA	NA	NA	26979	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.025000	0.462687	
mm_131358.1	chr16	13749453	13749653	+	1	NA	NA	NA	-19069	NM_011987	26565	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	0.015000	0.417910	
mm_105915.1	chr11	114989787	114989987	-	1	NA	NA	NA	-1	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.015000	0.452736	
mm_122436.1	chr14	45219191	45219391	-	1	NA	NA	NA	134	NM_172597	70561	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.065000	0.621891	
mm_61714.1	chr7	81523482	81523682	+	1	NA	NA	NA	32	NR_045299	100504421	Mm.217071	NR_045299	ENSMUSG00000097277	2900076A07Rik	WI1-1616M8.2	RIKEN cDNA 2900076A07 gene	ncRNA	0.070000	0.577114	
mm_29902.1	chr3	131470859	131471059	-	1	NA	NA	NA	-93809	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.010000	0.582090	60(TACTTTATAAAG,-,0.00),62(CTTTATAAAGGG,+,0.00),62(CTTTATAAAGGG,-,0.00)
mm_157038.1	chrX	7964079	7964279	-	1	NA	NA	NA	3731	NM_008089	14460	Mm.335973	NM_008089	ENSMUSG00000031162	Gata1	Gata-1|Gf-1|eryf1	GATA binding protein 1	protein-coding	0.015000	0.537313	
mm_61307.1	chr7	67952343	67952543	+	1	NA	NA	NA	186	NM_010513	16001	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.125000	0.686567	
mm_87518.1	chr10	52760843	52761043	+	1	NA	NA	NA	70442	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding	0.005000	0.253731	-74(CCCTTTTAAAAG,-,0.00),-73(CCTTTTAAAAGC,+,0.00),-73(CCTTTTAAAAGC,-,0.00),-72(CTTTTAAAAGCA,+,0.00)
mm_101068.1	chr11	11462127	11462327	-	1	NA	NA	NA	192	NM_015785	53604	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	0.170000	0.786070	
mm_159470.1	chr4	12139778	12139978	+	1	NA	NA	NA	-239	NM_028226	72397	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	0.015000	0.417910	
mm_25101.1	chr3	101286467	101286667	+	1	NA	NA	NA	1372	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.010000	0.527363	
mm_12020.1	chr2	58156155	58156355	+	1	NA	NA	NA	3867	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.025000	0.472637	10(CTCTTTTAAAGA,-,0.00),11(TCTTTTAAAGAA,+,0.00)
mm_77042.1	chr8	109575520	109575720	-	1	NA	NA	NA	3552	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.045000	0.527363	
mm_141123.1	chr17	26095401	26095601	-	1	NA	NA	NA	-31	NM_019731	56520	Mm.41787	NM_019731	ENSMUSG00000024177	Nme4	2610027N22Rik|2810024O08Rik|5730493H09Rik|NM23-M4|Nm23M4	NME/NM23 nucleoside diphosphate kinase 4	protein-coding	0.100000	0.686567	57(CCTTTTCGGGCG,+,0.00)
mm_17687.1	chr2	32323350	32323550	-	1	NA	NA	NA	4990	NR_029811	387239		NR_029811	ENSMUSG00000092807	Mir199b	Mirn199b|mir-199b	microRNA 199b	ncRNA	0.010000	0.552239	
mm_147622.1	chr18	58072717	58072917	-	1	NA	NA	NA	137109	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.015000	0.537313	
mm_112596.1	chr13	14090866	14091066	+	1	NA	NA	NA	27182	NM_198122	94246	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.035000	0.452736	
mm_82955.1	chr9	35570298	35570498	-	1	NA	NA	NA	-329	NM_029762	76832	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	hydrolethalus syndrome 1	protein-coding	0.115000	0.696517	
mm_153677.1	chr19	44396458	44396658	-	1	NA	NA	NA	11151	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.005000	0.492537	
mm_23853.1	chr3	83008607	83008807	+	1	NA	NA	NA	983	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.020000	0.432836	
mm_169321.1	chr14	113314712	113314912	+	1	NA	NA	NA	1293382	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA	0.040000	0.611940	
mm_140668.1	chr17	12916005	12916205	-	1	NA	NA	NA	-14	NM_026310	67681	Mm.290166	NM_026310	ENSMUSG00000057388	Mrpl18	1010001C05Rik|C79879|HSPC071|MRP-L18	mitochondrial ribosomal protein L18	protein-coding	0.050000	0.577114	
mm_61945.1	chr7	90183658	90183858	+	1	NA	NA	NA	53526	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.398010	
mm_148638.1	chr19	5474787	5474987	+	1	NA	NA	NA	152	NM_001164352	58859	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	0.105000	0.721393	
mm_163464.1	chr12	101382784	101382984	+	1	NA	NA	NA	-21789	NM_173023	271036	Mm.84218	NM_173023	ENSMUSG00000047014	Catsperb	4931410B03|4932415G16Rik	catsper channel auxiliary subunit beta	protein-coding	0.010000	0.343284	
mm_163520.1	chr12	115224685	115224885	+	1	NA	NA	NA	471009	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.000000	0.477612	
mm_80128.1	chr9	70580729	70580929	+	1	NA	NA	NA	37959	NM_025690	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.005000	0.373134	
mm_120498.1	chr14	65981363	65981563	+	1	NA	NA	NA	12980	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.035000	0.562189	
mm_154003.1	chr19	53028274	53028474	-	1	NA	NA	NA	10280	NM_133216	170750	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	0.025000	0.512438	
mm_81529.1	chr9	110062742	110062942	+	1	NA	NA	NA	10821	NM_001311164	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.020000	0.532338	-77(CCTTAAAGGCCG,+,0.00)
mm_49920.1	chr6	39205400	39205600	+	1	NA	NA	NA	1273	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.090000	0.606965	
mm_122148.1	chr14	31206699	31206899	-	1	NA	NA	NA	27	NM_022656	64652	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1	nischarin	protein-coding	0.095000	0.711443	
mm_1209.1	chr1	62726426	62726626	+	1	NA	NA	NA	23209	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.010000	0.542289	
mm_31832.1	chr4	70553613	70553813	+	1	NA	NA	NA	-18785	NM_172694	230316	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.010000	0.407960	-30(CCCTTAAAACAC,+,0.00)
mm_172950.1	chr9	82611030	82611230	+	1	NA	NA	NA	-218676	NM_001168240	65099	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	0.035000	0.507463	-30(GAGTATTTAAGG,-,0.00)
mm_108727.1	chr12	87266628	87266828	+	1	NA	NA	NA	0	NM_146036	217737	Mm.22626	NM_146036	ENSMUSG00000021037	Ahsa1	BC023857|p38	AHA1, activator of heat shock protein ATPase 1	protein-coding	0.065000	0.651741	
mm_73593.1	chr8	109997446	109997646	+	1	NA	NA	NA	7110	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.025000	0.457711	
mm_30976.1	chr4	34550838	34551038	+	1	NA	NA	NA	323	NM_001007589	433693	Mm.389532	NM_026019	ENSMUSG00000028291	Akirin2	2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2	akirin 2	protein-coding	0.175000	0.845771	
mm_13068.1	chr2	91118851	91119051	+	1	NA	NA	NA	807	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.005000	0.542289	-4(TCTTATATGGTG,+,0.00)
mm_128452.1	chr15	50772614	50772814	-	1	NA	NA	NA	116335	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.010000	0.427861	
mm_170102.1	chr17	39844420	39844620	+	1	NA	NA	NA	1523	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.135000	0.681592	
mm_134171.1	chr16	10796435	10796635	-	1	NA	NA	NA	288	NM_013637	19118	Mm.42733	NM_013637	ENSMUSG00000022501	Prm1	Prm-1	protamine 1	protein-coding	0.035000	0.532338	
mm_70912.1	chr8	25719948	25720148	+	1	NA	NA	NA	0	NR_121642	71910	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	0.115000	0.691542	
mm_113161.1	chr13	24803259	24803459	+	1	NA	NA	NA	1702	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.010000	0.378109	
mm_27453.1	chr3	52056256	52056456	-	1	NA	NA	NA	48650	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.005000	0.492537	
mm_117474.1	chr13	76271239	76271439	-	1	NA	NA	NA	-113622	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.010000	0.442786	
mm_155032.1	chrX	42068335	42068535	+	1	NA	NA	NA	37	NR_125870	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.085000	0.681592	
mm_133314.1	chr16	77642915	77643115	+	1	NA	NA	NA	-3258	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0.025000	0.497512	
mm_5293.1	chr1	21001345	21001545	-	1	NA	NA	NA	49819	NM_027974	71877	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	0.010000	0.527363	
mm_14943.1	chr2	151702098	151702298	+	1	NA	NA	NA	190	NM_001160363	108832	Mm.103494	NM_001160363	ENSMUSG00000044364	Tmem74b	5430405G05Rik	transmembrane protein 74B	protein-coding	0.095000	0.761194	
mm_112129.1	chr12	112941994	112942194	-	1	NA	NA	NA	48	NM_025399	66174	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0.120000	0.716418	
mm_58953.1	chr7	18787659	18787859	+	1	NA	NA	NA	1457	NR_024208	20958	Mm.423480	NR_024208	ENSMUSG00000109116	Sycp1-ps1	Sycp1-rs	synaptonemal complex protein 1, pseudogene 1	pseudo	0.005000	0.338308	
mm_151296.1	chr19	55464681	55464881	+	1	NA	NA	NA	148724	NM_001293686	53611	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.015000	0.457711	
mm_65616.1	chr7	27533603	27533803	-	1	NA	NA	NA	10442	NM_001033315	233020	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.050000	0.582090	
mm_9989.1	chr1	191348208	191348408	-	1	NA	NA	NA	22343	NM_025864	66950	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0.015000	0.472637	
mm_88551.1	chr10	78595404	78595604	+	1	NA	NA	NA	-3540	NM_027875	71709	Mm.86439	NM_027875	ENSMUSG00000032714	Syde1	1200008N06Rik|BB043000|mSYD1A	synapse defective 1, Rho GTPase, homolog 1 (C. elegans)	protein-coding	0.025000	0.522388	
mm_10544.1	chr2	16548841	16549041	+	1	NA	NA	NA	192637	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.000000	0.452736	
mm_168794.1	chr12	19490133	19490333	+	1	NA	NA	NA	975723	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.130000	0.761194	
mm_135631.1	chr16	52304016	52304216	-	1	NA	NA	NA	148965	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.323383	
mm_67616.1	chr7	83933394	83933594	-	1	NA	NA	NA	41494	NM_023403	67943	Mm.117365	NM_023403	ENSMUSG00000038503	Mesdc2	2210015O11Rik|AW537813|mKIAA0081|mesd|msd	mesoderm development candidate 2	protein-coding	0.015000	0.502488	
mm_89899.1	chr10	110937714	110937914	+	1	NA	NA	NA	17638	NM_007792	13008	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	0.025000	0.497512	
mm_69360.1	chr7	130519412	130519612	-	1	NA	NA	NA	68	NM_001136054	11907	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0.130000	0.686567	
mm_66066.1	chr7	30821110	30821310	-	1	NA	NA	NA	-18	NM_001168510	233079	Mm.97338	NM_146187	ENSMUSG00000051314	Ffar2	GPCR43|Gpr43	free fatty acid receptor 2	protein-coding	0.000000	0.442786	
mm_131991.1	chr16	25042891	25043091	+	1	NA	NA	NA	-16648	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.010000	0.492537	
mm_80223.1	chr9	72620346	72620546	+	1	NA	NA	NA	-41901	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.005000	0.318408	
mm_74.1	chr1	6674020	6674220	+	1	NA	NA	NA	-55931	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.422886	
mm_31382.1	chr4	47996326	47996526	+	1	NA	NA	NA	-48879	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.000000	0.442786	
mm_85535.1	chr9	106550161	106550361	-	1	NA	NA	NA	11364	NM_026645	68265	Mm.141451	NM_026645	ENSMUSG00000023577	Iqcf3	1700012F17Rik|AV040440	IQ motif containing F3	protein-coding	0.005000	0.412935	
mm_78612.1	chr9	37545078	37545278	+	1	NA	NA	NA	5923	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.040000	0.611940	
mm_40827.1	chr5	72902502	72902702	+	1	NA	NA	NA	-11760	NM_001113423	75991	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0.015000	0.422886	
mm_93738.1	chr10	120142080	120142280	-	1	NA	NA	NA	-29215	NM_080446	117599	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.015000	0.492537	-26(CTTTATAAAACC,+,0.00)
mm_60943.1	chr7	46920063	46920263	+	1	NA	NA	NA	-233	NM_021884	22088	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	0.095000	0.592040	
mm_36889.1	chr4	107437583	107437783	-	1	NA	NA	NA	2964	NM_147221	230587	Mm.331757	NM_147221	ENSMUSG00000034762	Glis1	Gli5|Gli6|GliH1	GLIS family zinc finger 1	protein-coding	0.020000	0.532338	42(CACTCTTAAAGG,-,0.00),44(CTCTTAAAGGCC,+,0.00)
mm_1976.1	chr1	86526698	86526898	+	1	NA	NA	NA	62	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.110000	0.646766	
mm_172170.1	chr6	44793094	44793294	+	1	NA	NA	NA	-266867	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.085000	0.547264	-8(AACTTTAAATGG,-,0.00)
mm_58740.1	chr7	13034772	13034972	+	1	NA	NA	NA	-95	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.050000	0.621891	
mm_132836.1	chr16	45535247	45535447	+	1	NA	NA	NA	81	NM_198106	208169	Mm.277437	NM_198106	ENSMUSG00000033210	Slc9c1	Gm610|NHE-10|Slc9a10|sNHE|spermNHE	solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1	protein-coding	0.015000	0.477612	
mm_115750.1	chr13	18397717	18397917	-	1	NA	NA	NA	-15778	NM_175006	218030	Mm.352263	NM_175006	ENSMUSG00000009734	Pou6f2	D130006K24Rik|RPF-1	POU domain, class 6, transcription factor 2	protein-coding	0.005000	0.527363	
mm_5648.1	chr1	40516396	40516596	-	1	NA	NA	NA	1134	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.025000	0.462687	
mm_85263.1	chr9	99420171	99420371	-	1	NA	NA	NA	16441	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.015000	0.467662	
mm_67326.1	chr7	79732097	79732297	-	1	NA	NA	NA	579	NM_175640	103968	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	0.015000	0.577114	
mm_63108.1	chr7	122670714	122670914	+	1	NA	NA	NA	-930	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.040000	0.597015	
mm_66697.1	chr7	45920305	45920505	-	1	NA	NA	NA	444	NM_001146346	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.000000	0.557214	
mm_51465.1	chr6	82652536	82652736	+	1	NA	NA	NA	229	NM_025882	66979	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	0.095000	0.686567	
mm_38657.1	chr4	143390270	143390470	-	1	NA	NA	NA	-4071	NM_031377	83491	Mm.190607	NM_031377	ENSMUSG00000041805	Pramel1	-	preferentially expressed antigen in melanoma-like 1	protein-coding	0.020000	0.447761	
mm_102144.1	chr11	53631605	53631805	-	1	NA	NA	NA	2997	NM_008355	16163	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	0.005000	0.482587	
mm_165250.1	chr2	71529871	71530071	+	1	NA	NA	NA	526	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.030000	0.537313	
mm_65904.1	chr7	30192875	30193075	-	1	NA	NA	NA	2073	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.045000	0.621891	
mm_106179.1	chr11	116694524	116694724	-	1	NA	NA	NA	36	NM_009180	20446	Mm.3947	NM_009180	ENSMUSG00000057286	St6galnac2	II|ST6GalNAc|Siat7|Siat7b	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding	0.110000	0.771144	
mm_56891.1	chr6	119108482	119108682	-	1	NA	NA	NA	-87	NM_001256002	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.190000	0.835821	
mm_88821.1	chr10	80803509	80803709	+	1	NA	NA	NA	-1639	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.035000	0.567164	
mm_156255.1	chrX	136708297	136708497	+	1	NA	NA	NA	332	NM_146236	237052	Mm.40713	NM_146236	ENSMUSG00000049536	Tceal1	0610011M09Rik|BC011290|P21|SIIR|pp21	transcription elongation factor A (SII)-like 1	protein-coding	0.020000	0.567164	-65(CCACATAAAGGG,-,0.00)
mm_2814.1	chr1	130877694	130877894	+	1	NA	NA	NA	9617	NM_053095	93672	Mm.196691	NM_053095	ENSMUSG00000026420	Il24	FISP|Mda-7|Mda7|St16	interleukin 24	protein-coding	0.020000	0.497512	
mm_47973.1	chr5	135910489	135910689	-	1	NA	NA	NA	22670	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.015000	0.497512	
mm_139785.1	chr17	65799931	65800131	+	1	NA	NA	NA	16676	NR_104465	70351	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0.005000	0.457711	-82(CCTTTTATGAAC,+,0.00)
mm_85231.1	chr9	98007664	98007864	-	1	NA	NA	NA	4344	NR_110443	66737	Mm.445908	NR_110443	ENSMUSG00000090255	4921534H16Rik	-	RIKEN cDNA 4921534H16 gene	ncRNA	0.010000	0.388060	
mm_4804.1	chr1	185270896	185271096	+	1	NA	NA	NA	28021	NR_035529	100316737		NR_035529	ENSMUSG00000105770	Mir664	mir-664|mmu-mir-664	microRNA 664	ncRNA	0.030000	0.562189	
mm_117867.1	chr13	98872114	98872314	-	1	NA	NA	NA	18828	NM_001048267	238799	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.035000	0.437811	
mm_70959.1	chr8	26979137	26979337	+	1	NA	NA	NA	1901	NM_001110508	353310	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.085000	0.671642	
mm_21278.1	chr2	156928511	156928711	-	1	NA	NA	NA	-41533	NM_029983	77799	Mm.29264	NM_029983	ENSMUSG00000027636	Sla2	A930009E21Rik|AI430952|SLAP-2|SLAP2	Src-like-adaptor 2	protein-coding	0.020000	0.522388	
mm_86686.1	chr10	18407746	18407946	+	1	NA	NA	NA	171	NM_173390	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.025000	0.537313	40(TGCCTTAAGAGG,-,0.00),41(GCCTTAAGAGGG,+,0.00)
mm_15717.1	chr2	164047537	164047737	+	1	NA	NA	NA	22413	NM_001114079	381404	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	0.020000	0.542289	
mm_169749.1	chr15	89355413	89355613	-	1	NA	NA	NA	146	NM_178919	105847	Mm.34511	NM_178919	ENSMUSG00000022614	Lmf2	AI451006|Tmem112b|Tmem153	lipase maturation factor 2	protein-coding	0.070000	0.626866	
mm_71420.1	chr8	46490848	46491048	+	1	NA	NA	NA	-18	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.015000	0.562189	
mm_120452.1	chr14	65968554	65968754	+	1	NA	NA	NA	171	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.065000	0.646766	-43(CGCTATAAATAG,-,0.00)
mm_73819.1	chr8	117410553	117410753	+	1	NA	NA	NA	-42370	NR_106045	102466801		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.025000	0.582090	
mm_133555.1	chr16	91387677	91387877	+	1	NA	NA	NA	14994	NM_001110498	15976	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.010000	0.383085	
mm_34246.1	chr4	141242780	141242980	+	1	NA	NA	NA	-4	NM_172520	213649	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	0.025000	0.661692	
mm_2945.1	chr1	132341963	132342163	+	1	NA	NA	NA	25885	NM_001311108	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.005000	0.552239	
mm_116146.1	chr13	29944396	29944596	-	1	NA	NA	NA	39895	NM_001289920	13557	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.030000	0.427861	
mm_40577.1	chr5	63967821	63968021	+	1	NA	NA	NA	976	NM_145923	100532	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0.030000	0.472637	-37(CCTTATAAAAAC,+,0.00),-37(CCTTATAAAAAC,-,0.00)
mm_67201.1	chr7	74285850	74286050	-	1	NA	NA	NA	268830	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.015000	0.373134	
mm_30744.1	chr4	14863955	14864155	+	1	NA	NA	NA	-164	NM_028264	72519	Mm.279158	NM_028264	ENSMUSG00000028221	Tmem55a	2610319K07Rik|AI315591|AV001360	transmembrane protein 55A	protein-coding	0.020000	0.606965	
mm_116869.1	chr13	55018276	55018476	-	1	NA	NA	NA	2443	NM_001206390	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.000000	0.402985	
mm_166026.1	chr4	125145436	125145636	+	1	NA	NA	NA	-17655	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.015000	0.562189	
mm_30713.1	chr4	12561006	12561206	+	1	NA	NA	NA	-345731	NM_173746	208820	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818|OTTMUSG00000004461	triple QxxK/R motif containing	protein-coding	0.020000	0.547264	
mm_133985.1	chr16	4559701	4559901	-	1	NA	NA	NA	-81	NM_031182	83383	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.040000	0.557214	
mm_82759.1	chr9	26861905	26862105	-	1	NA	NA	NA	-1182	NM_001113323	70893	Mm.78118	NM_001113323	ENSMUSG00000031966	Glb1l3	4921509F24Rik	galactosidase, beta 1 like 3	protein-coding	0.000000	0.437811	6(GACTTTATATGC,-,0.00)
mm_3025.1	chr1	133664315	133664515	+	1	NA	NA	NA	-3016	NM_144530	70579	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	0.005000	0.502488	
mm_20864.1	chr2	148439707	148439907	-	1	NA	NA	NA	3728	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.005000	0.457711	
mm_171336.1	chr4	101903591	101903791	-	1	NA	NA	NA	-9902	NM_001331179	242574	Mm.34251	NM_001331179	ENSMUSG00000046133	C130073F10Rik	-	RIKEN cDNA C130073F10 gene	protein-coding	0.005000	0.462687	
mm_52773.1	chr6	121210645	121210845	+	1	NA	NA	NA	11	NM_017379	53857	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0.060000	0.671642	
mm_78123.1	chr9	20644747	20644947	+	1	NA	NA	NA	23	NM_001310746	66177	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.080000	0.567164	
mm_56054.1	chr6	86761097	86761297	-	1	NA	NA	NA	13917	NM_001331120	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.015000	0.417910	65(TCTTTTAGACCC,+,0.00)
mm_62709.1	chr7	110767982	110768182	+	1	NA	NA	NA	-124	NM_001276301	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.030000	0.582090	
mm_40520.1	chr5	57867384	57867584	+	1	NA	NA	NA	149403	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.005000	0.328358	
mm_12947.1	chr2	87515912	87516112	+	1	NA	NA	NA	7554	NM_178249	347711	Mm.21815	NM_178249	ENSMUSG00000025838	Pramel6	C80453|C80515	preferentially expressed antigen in melanoma like 6	protein-coding	0.005000	0.447761	
mm_17753.1	chr2	32716674	32716874	-	1	NA	NA	NA	-3802	NR_039536	100628606		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0.025000	0.522388	
mm_8688.1	chr1	157244388	157244588	-	1	NA	NA	NA	-135808	NM_001305063	73435	Mm.116705	NM_028540	ENSMUSG00000026592	Tex35	1700057K13Rik	testis expressed 35	protein-coding	0.020000	0.482587	
mm_93489.1	chr10	111997084	111997284	-	1	NA	NA	NA	80	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.020000	0.477612	
mm_4957.1	chr1	191266770	191266970	+	1	NA	NA	NA	51248	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.020000	0.572139	
mm_117661.1	chr13	93430950	93431150	-	1	NA	NA	NA	68758	NM_021310	57748	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	0.000000	0.373134	
mm_53113.1	chr6	125096052	125096252	+	1	NA	NA	NA	-11	NM_145979	107932	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	0.100000	0.691542	-9(GGCCCTTTAAGA,-,0.00),-8(GCCCTTTAAGAG,-,0.00),-7(CCCTTTAAGAGG,-,0.00),-6(CCTTTAAGAGGC,+,0.00)
mm_63167.1	chr7	124089314	124089514	+	1	NA	NA	NA	106233	NM_001252072	628779	Mm.40210	NM_001252072	ENSMUSG00000078591	Hs3st4	EG628779|Gm6915	heparan sulfate (glucosamine) 3-O-sulfotransferase 4	protein-coding	0.010000	0.393035	-14(CTACATAAAAGG,-,0.00)
mm_108834.1	chr12	95780500	95780700	+	1	NA	NA	NA	88374	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.050000	0.522388	
mm_81954.1	chr9	120555543	120555743	+	1	NA	NA	NA	15825	NM_178676	215446	Mm.76648	NM_178676	ENSMUSG00000041608	Entpd3	Cd39l3|HB6|NTPDase-3	ectonucleoside triphosphate diphosphohydrolase 3	protein-coding	0.005000	0.462687	
mm_26767.1	chr3	8882643	8882843	-	1	NA	NA	NA	41114	NM_025434	66230	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.030000	0.517413	
mm_163694.1	chr13	100153028	100153228	+	1	NA	NA	NA	28273	NM_011420	20595	Mm.2025	NM_011420	ENSMUSG00000021645	Smn1	AI849087|Gemin1|Smn	survival motor neuron 1	protein-coding	0.000000	0.417910	
mm_27201.1	chr3	35719554	35719754	-	1	NA	NA	NA	-34484	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.005000	0.512438	
mm_148180.1	chr18	78205773	78205973	-	1	NA	NA	NA	567	NM_001110274	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.005000	0.502488	
mm_32693.1	chr4	115884288	115884488	+	1	NA	NA	NA	-12	NM_001039124	654462	Mm.388913	NM_001039124	ENSMUSG00000073774	Kncn	Kino|L5	kinocilin	protein-coding	0.010000	0.557214	-84(ACTTTAATAGGC,+,0.00)
mm_39645.1	chr5	24645368	24645568	+	1	NA	NA	NA	15	NR_003953	72252	Mm.87446	NR_003953	ENSMUSG00000038165	1700022A21Rik	-	glycerol-3-phosphate dehydrogenase 1-like pseudogene	pseudo	0.005000	0.487562	-91(CCTTATCAGGGG,+,0.00),2(GACTTTAAAGGG,-,0.00)
mm_44883.1	chr5	34650565	34650765	-	1	NA	NA	NA	9483	NM_029278	75416	Mm.40292	NM_029278	ENSMUSG00000036693	Nop14	2610033H07Rik|Nol14	NOP14 nucleolar protein	protein-coding	0.005000	0.487562	
mm_149742.1	chr19	22447981	22448181	+	1	NA	NA	NA	-127	NM_177341	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.040000	0.592040	
mm_46373.1	chr5	103655648	103655848	-	1	NA	NA	NA	-16	NM_001163550	74218	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.100000	0.676617	
mm_173270.1	chrX	96484763	96484963	+	1	NA	NA	NA	28517	NM_001159627	15203	Mm.277092	NM_010417	ENSMUSG00000031209	Heph	C130006F04Rik|Cpl|mKIAA0698|sla	hephaestin	protein-coding	0.015000	0.422886	
mm_123306.1	chr14	61690791	61690991	-	1	NA	NA	NA	-8518	NR_028264	668253	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.005000	0.447761	
mm_150895.1	chr19	45472663	45472863	+	1	NA	NA	NA	87801	NM_001330506	56626	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0.030000	0.517413	
mm_96481.1	chr11	67683799	67683999	+	1	NA	NA	NA	-11427	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.015000	0.522388	
mm_72686.1	chr8	84966697	84966897	+	1	NA	NA	NA	-786	NM_027187	69724	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	0.015000	0.552239	
mm_7052.1	chr1	87127721	87127921	-	1	NA	NA	NA	2813	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.045000	0.641791	
mm_41133.1	chr5	87788663	87788863	+	1	NA	NA	NA	14313	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.025000	0.383085	
mm_38611.1	chr4	141875176	141875376	-	1	NA	NA	NA	-356	NM_025994	27984	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	0.045000	0.611940	
mm_78566.1	chr9	35908318	35908518	+	1	NA	NA	NA	-58538	NR_030730	100041605	Mm.99350	NR_030730	ENSMUSG00000098705	Gm3428	-	predicted gene 3428	ncRNA	0.000000	0.393035	
mm_46762.1	chr5	112251129	112251329	-	1	NA	NA	NA	1289	NM_001312884	12959	Mm.40324	NM_021351	ENSMUSG00000066975	Cryba4	-	crystallin, beta A4	protein-coding	0.010000	0.532338	
mm_150696.1	chr19	42238519	42238719	+	1	NA	NA	NA	-8959	NM_001141983	71146	Mm.329851	NM_027694	ENSMUSG00000042532	Golga7b	4933417O08Rik|AI839934	golgi autoantigen, golgin subfamily a, 7B	protein-coding	0.015000	0.537313	
mm_108542.1	chr12	84316996	84317196	+	1	NA	NA	NA	237	NM_001252583	52708	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	0.090000	0.651741	
mm_160849.1	chr11	52213920	52214120	-	1	NA	NA	NA	-33	NM_207253	276865	Mm.377871	NM_207253	ENSMUSG00000060170	Olfr1371	GA_x6K02T2QP88-3214035-3214970|MOR256-58	olfactory receptor 1371	protein-coding	0.000000	0.407960	-13(CCATAAATAGCA,+,0.00)
mm_124149.1	chr14	92604378	92604578	-	1	NA	NA	NA	1284410	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.035000	0.422886	
mm_89183.1	chr10	86345920	86346120	+	1	NA	NA	NA	45608	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.020000	0.482587	
mm_34448.1	chr4	148001232	148001432	+	1	NA	NA	NA	610	NM_008725	230899	Mm.482123	NM_008725	ENSMUSG00000041616	Nppa	ANP|Anf|Pnd	natriuretic peptide type A	protein-coding	0.030000	0.582090	-70(CTCTTGAAAAGC,-,0.00)
mm_166524.1	chr6	24597929	24598129	+	1	NA	NA	NA	258	NM_053098	93677	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	0.020000	0.507463	
mm_14927.1	chr2	151494189	151494389	+	1	NA	NA	NA	107	NM_198326	386649	Mm.419479	NM_198326	ENSMUSG00000027455	Nsfl1c	Munc-18c|Stxbp3a|p47	NSFL1 (p97) cofactor (p47)	protein-coding	0.110000	0.686567	
mm_107734.1	chr12	57564001	57564201	+	1	NA	NA	NA	-14	NM_001312644	70846	Mm.84118	NM_001037743	ENSMUSG00000046782	Ttc6	4921506M07Rik|EG639426|ENSMUSG00000046782|Gm69|Gm9813	tetratricopeptide repeat domain 6	protein-coding	0.025000	0.557214	
mm_7015.1	chr1	86525193	86525393	-	1	NA	NA	NA	-1443	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.055000	0.621891	
mm_82269.1	chr9	7332657	7332857	-	1	NA	NA	NA	-11640	NM_001320077	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.442786	-34(AGCTATATAAGC,-,0.00)
mm_53033.1	chr6	124512624	124512824	+	1	NA	NA	NA	103	NM_023143	50909	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	0.005000	0.482587	
mm_11789.1	chr2	43128609	43128809	+	1	NA	NA	NA	-426616	NM_001289593	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.015000	0.497512	-98(CAGTATTAAAGA,-,0.00)
mm_121812.1	chr14	20393354	20393554	-	1	NA	NA	NA	101	NM_025440	66242	Mm.23747	NM_025440	ENSMUSG00000049960	Mrps16	1500011E11Rik|Mprs16	mitochondrial ribosomal protein S16	protein-coding	0.100000	0.696517	
mm_10756.1	chr2	23207362	23207562	+	1	NA	NA	NA	-14	NM_027635	70981	Mm.314026	NM_027635	ENSMUSG00000026774	4931423N10Rik	-	RIKEN cDNA 4931423N10 gene	protein-coding	0.035000	0.492537	
mm_50190.1	chr6	41684351	41684551	+	1	NA	NA	NA	20	NM_029671	76606	Mm.272520	NM_029671	ENSMUSG00000029867	1700034O15Rik	-	RIKEN cDNA 1700034O15 gene	protein-coding	0.010000	0.522388	
mm_155652.1	chrX	85870182	85870382	+	1	NA	NA	NA	9	NM_001163539	71398	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	0.000000	0.462687	
mm_115439.1	chr13	117602361	117602561	+	1	NA	NA	NA	141	NM_010408	15165	Mm.343429	NM_010408	ENSMUSG00000021730	Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding	0.160000	0.815920	
mm_171646.1	chr4	33269939	33270139	-	1	NA	NA	NA	-21252	NM_001033225	108767	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.035000	0.492537	-36(TCTTTTAAATAC,+,0.00)
mm_109345.1	chr12	109602919	109603119	+	1	NA	NA	NA	-926	NR_028261	75745	Mm.293263	NR_028261		Rian	5530401N18Rik|C130089L09Rik|Meg8	RNA imprinted and accumulated in nucleus	ncRNA	0.000000	0.467662	-63(GCTTATATGGTG,+,0.00)
mm_87846.1	chr10	60931897	60932097	+	1	NA	NA	NA	6135	NR_033616	73616	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	0.070000	0.567164	
mm_107023.1	chr12	12909303	12909503	+	1	NA	NA	NA	32433	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.000000	0.457711	
mm_15885.1	chr2	164839597	164839797	+	1	NA	NA	NA	5924	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.025000	0.597015	
mm_141954.1	chr17	35115396	35115596	-	1	NA	NA	NA	-96	NM_148939	266614	Mm.104680	NM_148939	ENSMUSG00000043807	Ly6g5b	-	lymphocyte antigen 6 complex, locus G5B	protein-coding	0.000000	0.532338	
mm_50397.1	chr6	48718551	48718751	+	1	NA	NA	NA	30	NM_146167	231932	Mm.30479	NM_146167	ENSMUSG00000043931	Gimap7	IAN7|Ian3	GTPase, IMAP family member 7	protein-coding	0.010000	0.547264	
mm_123135.1	chr14	56571714	56571914	-	1	NA	NA	NA	32	NM_001014996	219103	Mm.212525	NM_001014996	ENSMUSG00000064128	Cenpj	4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4	centromere protein J	protein-coding	0.070000	0.601990	
mm_71710.1	chr8	61936058	61936258	+	1	NA	NA	NA	8071	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.015000	0.378109	
mm_131558.1	chr16	18066338	18066538	+	1	NA	NA	NA	35	NM_001289813	13353	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0.170000	0.756219	
mm_77517.1	chr8	122894695	122894895	-	1	NA	NA	NA	46421	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.030000	0.497512	
mm_55406.1	chr6	60829738	60829938	-	1	NA	NA	NA	17	NM_009221	20617	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alphaSYN	synuclein, alpha	protein-coding	0.010000	0.437811	
mm_134968.1	chr16	32002954	32003154	-	1	NA	NA	NA	233	NM_177103	320213	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	0.105000	0.716418	
mm_26547.1	chr3	146220843	146221043	+	1	NA	NA	NA	-18	NM_022983	65086	Mm.155520	NM_022983	ENSMUSG00000036832	Lpar3	Edg7|lpA3	lysophosphatidic acid receptor 3	protein-coding	0.130000	0.756219	
mm_100581.1	chr11	120784347	120784547	+	1	NA	NA	NA	-68	NM_145370	209318	Mm.30195	NM_145370	ENSMUSG00000025156	Gps1	Cops1|Csn1|R75577|Sgn1	G protein pathway suppressor 1	protein-coding	0.175000	0.850746	
mm_143284.1	chr17	65849552	65849752	-	1	NA	NA	NA	35271	NM_001198949	19765	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.020000	0.373134	-41(CTTTTTAAACCA,+,0.00)
mm_88092.1	chr10	68723674	68723874	+	1	NA	NA	NA	28	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.050000	0.631841	
mm_100547.1	chr11	120708009	120708209	+	1	NA	NA	NA	5658	NM_016665	20892	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0.025000	0.572139	
mm_151134.1	chr19	50678833	50679033	+	1	NA	NA	NA	-287	NM_001290356	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.065000	0.631841	
mm_67228.1	chr7	74555028	74555228	-	1	NA	NA	NA	-348	NM_001038643	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.045000	0.641791	
mm_52367.1	chr6	112976081	112976281	+	1	NA	NA	NA	-28915	NM_080448	259302	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	0.025000	0.412935	
mm_113287.1	chr13	30166867	30167067	+	1	NA	NA	NA	30477	NM_153546	218121	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	0.025000	0.462687	
mm_139702.1	chr17	57451403	57451603	+	1	NA	NA	NA	92817	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.343284	
mm_50939.1	chr6	57707331	57707531	+	1	NA	NA	NA	4976	NM_133737	71835	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.010000	0.402985	
mm_155450.1	chrX	73495268	73495468	+	1	NA	NA	NA	-7718	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.000000	0.437811	
mm_139984.1	chr17	72837488	72837688	+	1	NA	NA	NA	884	NM_027166	383295	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee-like 5 (Drosophila)	protein-coding	0.135000	0.751244	
mm_36349.1	chr4	73950407	73950607	-	1	NA	NA	NA	339	NM_027981	71886	Mm.158769	NM_027104	ENSMUSG00000028396	2310002L09Rik	2310003M01Rik|AV083437	RIKEN cDNA 2310002L09 gene	protein-coding	0.025000	0.467662	50(TCTTTTATAAAG,+,0.00),52(TTTTATAAAGAG,+,0.00)
mm_156478.1	chrX	144153605	144153805	+	1	NA	NA	NA	10	NR_040271	319764	Mm.208482	NR_040271	ENSMUSG00000085139	A730046J19Rik	-	RIKEN cDNA A730046J19 gene	ncRNA	0.020000	0.527363	
mm_61460.1	chr7	75596298	75596498	+	1	NA	NA	NA	140864	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.015000	0.432836	
mm_99670.1	chr11	105968419	105968619	+	1	NA	NA	NA	574	NM_207624	11421	Mm.754	NM_009598	ENSMUSG00000020681	Ace	AW208573|CD143	angiotensin I converting enzyme (peptidyl-dipeptidase A) 1	protein-coding	0.040000	0.597015	
mm_101742.1	chr11	43379105	43379305	-	1	NA	NA	NA	-4744	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.005000	0.358209	
mm_113440.1	chr13	34924302	34924502	+	1	NA	NA	NA	-7	NM_025750	66761	Mm.157047	NM_025750	ENSMUSG00000021415	4933417A18Rik	-	RIKEN cDNA 4933417A18 gene	protein-coding	0.010000	0.502488	
mm_45116.1	chr5	45639351	45639551	-	1	NA	NA	NA	50	NM_021416	58227	Mm.266466	NM_021416	ENSMUSG00000015879	Fam184b	9630031F12Rik|AB041544	family with sequence similarity 184, member B	protein-coding	0.095000	0.656716	
mm_58386.1	chr6	149309571	149309771	-	1	NA	NA	NA	257	NM_001289662	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.115000	0.661692	
mm_25752.1	chr3	123293596	123293796	+	1	NA	NA	NA	26200	NM_027135	69608	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	0.030000	0.651741	
mm_30634.1	chr4	8811185	8811385	+	1	NA	NA	NA	120879	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.030000	0.562189	
mm_83565.1	chr9	46315809	46316009	-	1	NA	NA	NA	4077	NM_183104	74361	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding	0.020000	0.497512	
mm_150516.1	chr19	39031258	39031458	+	1	NA	NA	NA	24339	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.010000	0.383085	
mm_113734.1	chr13	44196977	44197177	+	1	NA	NA	NA	19410	NR_045088	100503592	Mm.184925	NR_045088		A330076C08Rik	-	RIKEN cDNA A330076C08 gene	ncRNA	0.040000	0.472637	
mm_61586.1	chr7	80014116	80014316	+	1	NA	NA	NA	-10598	NM_001145999	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.005000	0.378109	
mm_113676.1	chr13	42753898	42754098	+	1	NA	NA	NA	44417	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.000000	0.417910	71(CTTCTTAAAAGC,-,0.00)
mm_16748.1	chr2	9834120	9834320	-	1	NA	NA	NA	44380	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.015000	0.412935	-33(ACCTATAAAGAG,-,0.00)
mm_60856.1	chr7	45866143	45866343	+	1	NA	NA	NA	438	NM_008172	14814	Mm.322594	NM_008172	ENSMUSG00000002771	Grin2d	GluN2D|NMDAR2D|NR2D	glutamate receptor, ionotropic, NMDA2D (epsilon 4)	protein-coding	0.150000	0.721393	
mm_95250.1	chr11	44618485	44618685	+	1	NA	NA	NA	485	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.055000	0.517413	
mm_162729.1	chr10	42334072	42334272	+	1	NA	NA	NA	-57430	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.010000	0.472637	-45(CAGTATATAAGC,-,0.00)
mm_73615.1	chr8	110117566	110117766	+	1	NA	NA	NA	37932	NM_175480	234725	Mm.87487	NM_175480	ENSMUSG00000044676	Zfp612	B230354B21Rik	zinc finger protein 612	protein-coding	0.010000	0.512438	
mm_148012.1	chr18	68300071	68300271	-	1	NA	NA	NA	162	NM_153794	108654	Mm.125857	NM_153794	ENSMUSG00000038121	Fam210a	4933403F05Rik|AA987140|AV134576|AW491926	family with sequence similarity 210, member A	protein-coding	0.115000	0.716418	
mm_106815.1	chr12	7980417	7980617	+	1	NA	NA	NA	2840	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.000000	0.447761	39(CCTTAAAGAGGT,+,0.00)
mm_27001.1	chr3	25838439	25838639	-	1	NA	NA	NA	314768	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.378109	
mm_4808.1	chr1	185332080	185332280	+	1	NA	NA	NA	21	NM_001347210	23827	Mm.227549	NM_011794	ENSMUSG00000026617	Bpnt1	BPntase	bisphosphate 3'-nucleotidase 1	protein-coding	0.105000	0.676617	
mm_55865.1	chr6	83456737	83456937	-	1	NA	NA	NA	-445	NM_001347313	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.090000	0.776119	
mm_46686.1	chr5	109796178	109796378	-	1	NA	NA	NA	37864	NR_027964	667213	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213|ENSMUSG00000072761	zinc finger protein pseudogene	pseudo	0.040000	0.532338	
mm_113259.1	chr13	28417442	28417642	+	1	NA	NA	NA	275058	NM_023746	28078	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0.010000	0.467662	
mm_142558.1	chr17	46639966	46640166	-	1	NA	NA	NA	5078	NM_029091	74764	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0.030000	0.572139	
mm_42072.1	chr5	110101097	110101297	+	1	NA	NA	NA	638	NM_001281812	403178	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0.035000	0.641791	
mm_116355.1	chr13	40683791	40683991	-	1	NA	NA	NA	-43917	NR_125899	102633805		NR_125899	ENSMUSG00000097752	Gm26688	Tfap2a-as1	predicted gene, 26688	ncRNA	0.000000	0.507463	
mm_140675.1	chr17	12991447	12991647	-	1	NA	NA	NA	712	NM_001113533	60532	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.025000	0.368159	
mm_122014.1	chr14	27337141	27337341	-	1	NA	NA	NA	1204	NM_001289687	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.020000	0.547264	
mm_72050.1	chr8	71366808	71367008	+	1	NA	NA	NA	60	NM_001145780	67023	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.075000	0.572139	
mm_170171.1	chr17	56047496	56047696	+	1	NA	NA	NA	7180	NM_013733	27221	Mm.391010	NM_013733	ENSMUSG00000002835	Chaf1a	AL023013|AL024058|CAF-1|Cac1p	chromatin assembly factor 1, subunit A (p150)	protein-coding	0.025000	0.641791	
mm_149647.1	chr19	17926454	17926654	+	1	NA	NA	NA	-88922	NM_001190483	18552	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding	0.030000	0.398010	
mm_27909.1	chr3	79521283	79521483	-	1	NA	NA	NA	46296	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.005000	0.412935	-66(GTTTATAAAAGA,-,0.00)
mm_70955.1	chr8	26977374	26977574	+	1	NA	NA	NA	138	NM_001110508	353310	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.105000	0.716418	
mm_33799.1	chr4	134926497	134926697	+	1	NA	NA	NA	2972	NM_023665	27981	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.020000	0.363184	
mm_134917.1	chr16	30314739	30314939	-	1	NA	NA	NA	-4058	NM_008148	14729	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	0.010000	0.512438	
mm_64360.1	chr7	142398181	142398381	+	1	NA	NA	NA	-10411	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.005000	0.512438	
mm_21942.1	chr2	167060734	167060934	-	1	NA	NA	NA	-2100	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.000000	0.517413	
mm_29282.1	chr3	107670473	107670673	-	1	NA	NA	NA	25975	NM_145542	229709	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	0.010000	0.358209	-37(GAGTATTTAAAG,-,0.00),-35(GTATTTAAAGTC,+,0.00)
mm_76475.1	chr8	85432703	85432903	-	1	NA	NA	NA	38	NR_033144	66714	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	0.120000	0.721393	
mm_40040.1	chr5	33820396	33820596	+	1	NA	NA	NA	-22616	NM_175231	107823	Mm.19892	NM_175231	ENSMUSG00000057406	Whsc1	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|NSD2|Whsc1l|mKIAA1090	Wolf-Hirschhorn syndrome candidate 1 (human)	protein-coding	0.200000	0.800995	
mm_37897.1	chr4	132611300	132611500	-	1	NA	NA	NA	-27646	NM_210071	14050	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0.020000	0.547264	
mm_57290.1	chr6	124433403	124433603	-	1	NA	NA	NA	-18436	NM_001277805	19305	Mm.22418	NM_008995	ENSMUSG00000005069	Pex5	AW212715|ESTM1|PTS1R|Pxr1|X83306	peroxisomal biogenesis factor 5	protein-coding	0.025000	0.497512	
mm_39222.1	chr4	156199560	156199760	-	1	NA	NA	NA	1158	NM_015783	100038882	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	0.025000	0.597015	
mm_136529.1	chr16	97478645	97478845	-	1	NA	NA	NA	-15839	NR_003520	17857	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.005000	0.537313	
mm_56003.1	chr6	86487950	86488150	-	1	NA	NA	NA	177	NR_040293	381792	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.025000	0.497512	
mm_148569.1	chr19	4855108	4855308	+	1	NA	NA	NA	79	NM_019861	56464	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	0.080000	0.626866	
mm_4744.1	chr1	182124687	182124887	+	1	NA	NA	NA	50	NM_012058	27058	Mm.273196	NM_012058	ENSMUSG00000026511	Srp9	9kDa	signal recognition particle 9	protein-coding	0.140000	0.736318	
mm_79416.1	chr9	55213760	55213960	+	1	NA	NA	NA	4925	NM_028049	71999	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	0.015000	0.532338	
mm_51145.1	chr6	70572494	70572694	+	1	NA	NA	NA	219581	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.482587	-21(GCTTCTTTAAGG,-,0.00)
mm_58279.1	chr6	145861917	145862117	-	1	NA	NA	NA	3403	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.000000	0.318408	
mm_52136.1	chr6	97956914	97957114	+	1	NA	NA	NA	27197	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.015000	0.482587	
mm_51537.1	chr6	83195779	83195979	+	1	NA	NA	NA	9933	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.015000	0.562189	
mm_88999.1	chr10	81575451	81575651	+	1	NA	NA	NA	264	NM_001252401	21886	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0.020000	0.587065	
mm_124808.1	chr15	8914005	8914205	+	1	NA	NA	NA	-53844	NM_198024	223332	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0.030000	0.452736	
mm_51961.1	chr6	91757915	91758115	+	1	NA	NA	NA	49378	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.030000	0.592040	
mm_148577.1	chr19	4962220	4962420	+	1	NA	NA	NA	14	NM_025553	66419	Mm.28494	NM_025553	ENSMUSG00000024902	Mrpl11	2410001P07Rik|L11mt	mitochondrial ribosomal protein L11	protein-coding	0.050000	0.502488	
mm_40770.1	chr5	67098579	67098779	+	1	NA	NA	NA	447	NM_008888	18935	Mm.62505	NM_008888	ENSMUSG00000012520	Phox2b	Dilp1|NBPhox|Pmx2b|Px2b	paired-like homeobox 2b	protein-coding	0.060000	0.527363	
mm_10699.1	chr2	22755876	22756076	+	1	NA	NA	NA	-18351	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.000000	0.462687	
mm_144151.1	chr18	5591336	5591536	+	1	NA	NA	NA	-424	NM_011546	21417	Mm.3929	NM_011546	ENSMUSG00000024238	Zeb1	3110032K11Rik|AREB6|BZP|MEB1|Nil2|TCF-8|Tcf18|Tcf8|Tw|ZEB|Zfhep|Zfhx1a|Zfx1a|Zfx1ha|[delta]EF1	zinc finger E-box binding homeobox 1	protein-coding	0.140000	0.711443	
mm_125616.1	chr15	61987351	61987551	+	1	NA	NA	NA	2110	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.040000	0.567164	
mm_109980.1	chr12	12941342	12941542	-	1	NA	NA	NA	394	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.035000	0.512438	-87(GCTTTTCTGGGG,+,0.00),57(CCTTTTACAGCC,+,0.00)
mm_171150.1	chr3	159494994	159495194	+	1	NA	NA	NA	-339	NM_001172092	76131	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	0.010000	0.467662	75(TCTTTTAGGGGT,+,0.00)
mm_79490.1	chr9	57073645	57073845	+	1	NA	NA	NA	1705	NM_001110351	20466	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	0.050000	0.611940	
mm_90273.1	chr10	122757057	122757257	+	1	NA	NA	NA	77842	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.005000	0.417910	
mm_60968.1	chr7	47772714	47772914	+	1	NA	NA	NA	-171442	NM_153067	233222	Mm.240142	NM_153067	ENSMUSG00000078698	Mrgpra3	Mrga3	MAS-related GPR, member A3	protein-coding	0.000000	0.368159	
mm_95052.1	chr11	32358595	32358795	+	1	NA	NA	NA	10884	NM_177364	268396	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.010000	0.393035	-62(TTCTTTTTAAGG,-,0.00),-60(CTTTTTAAGGAT,+,0.00),5(CCTTTTATACCT,+,0.00)
mm_133820.1	chr16	95769094	95769294	+	1	NA	NA	NA	66787	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.005000	0.537313	
mm_154795.1	chrX	13202510	13202710	+	1	NA	NA	NA	33673	NR_045430	72122	Mm.75434	NR_045429	ENSMUSG00000100714	2010308F09Rik	-	RIKEN cDNA 2010308F09 gene	ncRNA	0.050000	0.567164	-84(CACTATAAAGAC,-,0.00)
mm_134235.1	chr16	11909245	11909445	-	1	NA	NA	NA	78	NM_146067	223978	Mm.86360	NM_146067	ENSMUSG00000065979	Cpped1	C530044N13Rik	calcineurin-like phosphoesterase domain containing 1	protein-coding	0.065000	0.656716	
mm_137684.1	chr17	28847878	28848078	+	1	NA	NA	NA	-10433	NM_001034885	433091	Mm.328925	NM_001034885	ENSMUSG00000043286	Pnpla1	-	patatin-like phospholipase domain containing 1	protein-coding	0.025000	0.452736	-32(ATGTATAAAAGG,-,0.00)
mm_40775.1	chr5	67260662	67260862	+	1	NA	NA	NA	197	NM_030108	67878	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	0.105000	0.621891	-39(GGCCCTTTAAGG,-,0.00),-38(GCCCTTTAAGGC,-,0.00),-37(CCCTTTAAGGCC,+,0.00)
mm_166808.1	chr7	6774745	6774945	+	1	NA	NA	NA	-28742	NR_037213	100499513		NR_037213	ENSMUSG00000092815	Mir3099	mir-3099|mmu-mir-3099	microRNA 3099	ncRNA	0.000000	0.477612	
mm_41111.1	chr5	87777956	87778156	+	1	NA	NA	NA	3606	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.000000	0.253731	
mm_156860.1	chrX	164402136	164402336	+	1	NA	NA	NA	-17551	NM_011081	18700	Mm.3781	NM_011081	ENSMUSG00000031381	Piga	AI194334|Pig-a	phosphatidylinositol glycan anchor biosynthesis, class A	protein-coding	0.010000	0.507463	
mm_115876.1	chr13	21750439	21750639	-	1	NA	NA	NA	14	NM_178211	319160	Mm.255646	NM_178211	ENSMUSG00000064288	Hist1h4k	-	histone cluster 1, H4k	protein-coding	0.070000	0.621891	-33(CAGTATAAAAAG,-,0.00)
mm_111393.1	chr12	90726812	90727012	-	1	NA	NA	NA	12125	NM_010050	13371	Mm.21389	NM_010050	ENSMUSG00000007682	Dio2	5DII|AI324267|DIOII	deiodinase, iodothyronine, type II	protein-coding	0.010000	0.363184	24(CCTTTTATAATA,+,0.00)
mm_171165.1	chr3	25731132	25731332	+	1	NA	NA	NA	422075	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.055000	0.522388	-68(CCATTTAAACCA,+,0.00)
mm_35903.1	chr4	49597743	49597943	-	1	NA	NA	NA	27	NM_025944	67063	Mm.490285	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	0.065000	0.686567	
mm_81109.1	chr9	106453159	106453359	+	1	NA	NA	NA	-579	NM_021567	59092	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	0.005000	0.527363	7(TCCTAGTAAAGG,-,0.00)
mm_63629.1	chr7	128374472	128374672	+	1	NA	NA	NA	43600	NM_026418	67865	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.015000	0.407960	40(CCTTAAAGAACC,+,0.00)
mm_126493.1	chr15	81648704	81648904	+	1	NA	NA	NA	-15085	NM_001289712	214669	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	l(3)mbt-like 2 (Drosophila)	protein-coding	0.000000	0.393035	-74(TTTTATAAAGGG,+,0.00)
mm_20160.1	chr2	122147411	122147611	-	1	NA	NA	NA	-176	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.015000	0.462687	-32(TCTTATAAAGTC,+,0.00)
mm_89766.1	chr10	100096929	100097129	+	1	NA	NA	NA	81208	NM_013598	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.020000	0.363184	
mm_107329.1	chr12	31870484	31870684	+	1	NA	NA	NA	79951	NM_177993	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.000000	0.368159	
mm_43393.1	chr5	135778368	135778568	+	1	NA	NA	NA	-83	NM_001289557	76571	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0.085000	0.641791	
mm_13374.1	chr2	103606335	103606535	+	1	NA	NA	NA	40125	NM_178890	99382	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.005000	0.452736	
mm_160879.1	chr11	69156777	69156977	+	1	NA	NA	NA	-195	NM_009659	11686	Mm.340329	NM_009659	ENSMUSG00000032807	Alox12b	12R-LOX|Aloxe2|e-LOX2	arachidonate 12-lipoxygenase, 12R type	protein-coding	0.030000	0.621891	
mm_60979.1	chr7	48963807	48964007	+	1	NA	NA	NA	4834	NM_001111016	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.030000	0.507463	
mm_56708.1	chr6	115251753	115251953	-	1	NA	NA	NA	-4	NM_080639	110595	Mm.255607	NM_080639	ENSMUSG00000030317	Timp4	TIMP-4	tissue inhibitor of metalloproteinase 4	protein-coding	0.025000	0.621891	-29(CCTCATAAAGAC,+,0.00)
mm_81293.1	chr9	108337189	108337389	+	1	NA	NA	NA	-1791	NM_008160	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.005000	0.437811	
mm_2238.1	chr1	91053083	91053283	+	1	NA	NA	NA	-261	NM_001310732	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.050000	0.616915	
mm_41028.1	chr5	83837092	83837292	+	1	NA	NA	NA	-481997	NM_153801	243078	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding	0.005000	0.447761	
mm_165208.1	chr2	34958214	34958414	+	1	NA	NA	NA	3458	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.020000	0.482587	
mm_163225.1	chr11	102097494	102097694	-	1	NA	NA	NA	3706	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.035000	0.597015	
mm_102329.1	chr11	57828860	57829060	-	1	NA	NA	NA	3187	NM_008213	15110	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed transcript 1	protein-coding	0.030000	0.487562	
mm_99933.1	chr11	111026577	111026777	+	1	NA	NA	NA	2817	NM_001252208	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.000000	0.407960	
mm_27558.1	chr3	58525678	58525878	-	1	NA	NA	NA	-43	NM_001005509	229317	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	0.110000	0.721393	
mm_130301.1	chr15	97019781	97019981	-	1	NA	NA	NA	36075	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.055000	0.522388	
mm_93840.1	chr10	121626200	121626400	-	1	NA	NA	NA	16	NM_001081056	73192	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	0.145000	0.736318	
mm_53748.1	chr6	145212427	145212627	+	1	NA	NA	NA	1380	NM_133688	67636	Mm.486359	NM_133688	ENSMUSG00000040370	Lyrm5	4930469P12Rik|AL022899|Etfrf1|Ghiso	LYR motif containing 5	protein-coding	0.010000	0.383085	
mm_9616.1	chr1	176213944	176214144	-	1	NA	NA	NA	-102	NM_001195816	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	0.025000	0.557214	
mm_158145.1	chrX	103467214	103467414	-	1	NA	NA	NA	15919	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.000000	0.388060	
mm_63517.1	chr7	127876839	127877039	+	1	NA	NA	NA	-116	NM_146259	244219	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.040000	0.582090	
mm_8431.1	chr1	152592671	152592871	-	1	NA	NA	NA	32446	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.015000	0.547264	
mm_133501.1	chr16	90498402	90498602	+	1	NA	NA	NA	112105	NM_015755	26559	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.030000	0.517413	
mm_110917.1	chr12	76254952	76255152	-	1	NA	NA	NA	-180	NM_138745	108156	Mm.29584	NM_138745	ENSMUSG00000021048	Mthfd1	Dcs|E430024A07Rik|Mthfd	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	protein-coding	0.060000	0.592040	
mm_123580.1	chr14	67008434	67008634	-	1	NA	NA	NA	343	NM_009761	12177	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0.125000	0.731343	
mm_163295.1	chr11	119916602	119916802	+	1	NA	NA	NA	2892	NM_001085498	208092	Mm.306673	NM_001085498	ENSMUSG00000025371	Chmp6	2400004G01Rik	charged multivesicular body protein 6	protein-coding	0.010000	0.562189	
mm_18475.1	chr2	62412127	62412327	-	1	NA	NA	NA	4	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.005000	0.502488	
mm_163821.1	chr14	19416660	19416860	-	1	NA	NA	NA	185827	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.343284	
mm_32109.1	chr4	98923634	98923834	+	1	NA	NA	NA	-76	NM_001301414	230484	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	0.150000	0.741294	
mm_156675.1	chrX	159256017	159256217	+	1	NA	NA	NA	335	NM_001346675	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	0.095000	0.731343	
mm_22379.1	chr2	181156703	181156903	-	1	NA	NA	NA	212	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.100000	0.666667	
mm_53224.1	chr6	127072806	127073006	+	1	NA	NA	NA	4	NM_022657	64654	Mm.347933	NM_022657	ENSMUSG00000000182	Fgf23	-	fibroblast growth factor 23	protein-coding	0.010000	0.502488	-34(CCCTTTAAAAGT,-,0.00),-33(CCTTTAAAAGTC,+,0.00)
mm_142299.1	chr17	42372721	42372921	-	1	NA	NA	NA	56874	NM_028474	627626	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	0.000000	0.402985	
mm_137994.1	chr17	33638022	33638222	+	1	NA	NA	NA	27	NR_028279	378460	Mm.272606	NM_001002842	ENSMUSG00000032739	Pram1	AY665714	PML-RAR alpha-regulated adaptor molecule 1	protein-coding	0.015000	0.557214	
mm_109022.1	chr12	103551600	103551800	+	1	NA	NA	NA	19135	NM_028980	74521	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	0.010000	0.432836	
mm_168846.1	chr12	23800804	23801004	-	1	NA	NA	NA	296365	NM_001256489	66808	Mm.379124	NM_001256489	ENSMUSG00000073158	9030624G23Rik	-	RIKEN cDNA 9030624G23 gene	protein-coding	0.115000	0.741294	
mm_69741.1	chr7	140950187	140950387	-	1	NA	NA	NA	-48	NM_053088	73835	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	0.035000	0.582090	
mm_31408.1	chr4	48047776	48047976	+	1	NA	NA	NA	2571	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.035000	0.552239	
mm_21206.1	chr2	155640618	155640818	-	1	NA	NA	NA	17838	NR_030757	735275		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	0.030000	0.587065	
mm_163966.1	chr14	54966425	54966625	-	1	NA	NA	NA	82	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.010000	0.572139	-84(GGATATAAAGGG,-,0.00)
mm_145078.1	chr18	42319801	42320001	+	1	NA	NA	NA	44548	NM_172626	225432	Mm.329400	NM_172626	ENSMUSG00000024491	Rbm27	A730010I06|AI043120|Psc1|mKIAA1311	RNA binding motif protein 27	protein-coding	0.010000	0.417910	
mm_88668.1	chr10	80017520	80017720	+	1	NA	NA	NA	705	NM_001347074	70719	Mm.243954	NM_027521	ENSMUSG00000035697	Hmha1	6330406L22Rik|AW539505|Ha-1	histocompatibility (minor) HA-1	protein-coding	0.010000	0.606965	
mm_154482.1	chrM	4457	4657	-	1	NA	NA	NA	NA	NA									0.000000	0.328358	
mm_25382.1	chr3	107212730	107212930	+	1	NA	NA	NA	8902	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.482587	
mm_88574.1	chr10	79682054	79682254	+	1	NA	NA	NA	-41	NM_177613	216150	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|UBE2R1	cell division cycle 34	protein-coding	0.175000	0.786070	
mm_108242.1	chr12	78196979	78197179	+	1	NA	NA	NA	-29576	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.000000	0.398010	
mm_131091.1	chr16	4886154	4886354	+	1	NA	NA	NA	154	NM_001252437	17237	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.125000	0.771144	
mm_85855.1	chr9	110742471	110742671	-	1	NA	NA	NA	39	NM_001083936	19228	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.120000	0.746269	
mm_96982.1	chr11	70656533	70656733	+	1	NA	NA	NA	-543	NM_001136062	13808	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.045000	0.577114	
mm_139734.1	chr17	57484623	57484823	+	1	NA	NA	NA	60591	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.000000	0.328358	
mm_171675.1	chr4	51254260	51254460	-	1	NA	NA	NA	37682	NM_001162865	74914	Mm.159368	NM_001162865	ENSMUSG00000039555	Cylc2	4930488P18Rik	cylicin, basic protein of sperm head cytoskeleton 2	protein-coding	0.030000	0.407960	
mm_156479.1	chrX	144153641	144153841	+	1	NA	NA	NA	46	NR_040271	319764	Mm.208482	NR_040271	ENSMUSG00000085139	A730046J19Rik	-	RIKEN cDNA A730046J19 gene	ncRNA	0.020000	0.497512	
mm_70240.1	chr8	3353515	3353715	+	1	NA	NA	NA	200	NM_001033378	319493	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0.005000	0.507463	-51(AACCATAAAAAG,-,0.00),-49(CCATAAAAAGCC,+,0.00)
mm_125869.1	chr15	75517166	75517366	+	1	NA	NA	NA	49382	NM_001135689	23934	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	0.015000	0.597015	
mm_44517.1	chr5	24351538	24351738	-	1	NA	NA	NA	-34	NM_013569	16511	Mm.6539	NM_013569	ENSMUSG00000038319	Kcnh2	AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding	0.180000	0.830846	
mm_100900.1	chr11	6159773	6159973	-	1	NA	NA	NA	13458	NR_029471	100042173	Mm.441799	NR_029471		Rps15a-ps6	Gm11968|OTTMUSG00000005107	ribosomal protein S15A, pseudogene 6	pseudo	0.005000	0.457711	
mm_141087.1	chr17	25942763	25942963	-	1	NA	NA	NA	-874	NM_011822	14755	Mm.362054	NM_011822	ENSMUSG00000025728	Pigq	Gpi1|Gpi1h|Gpi1p|Gpih	phosphatidylinositol glycan anchor biosynthesis, class Q	protein-coding	0.000000	0.562189	
mm_79757.1	chr9	62374562	62374762	+	1	NA	NA	NA	33319	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.010000	0.562189	
mm_137923.1	chr17	32506330	32506530	+	1	NA	NA	NA	-32	NM_001101445	208285	Mm.311422	NM_001101445	ENSMUSG00000091586	Cyp4f17	EG208285	cytochrome P450, family 4, subfamily f, polypeptide 17	protein-coding	0.050000	0.646766	
mm_79309.1	chr9	52048183	52048383	+	1	NA	NA	NA	342	NM_001104617	19684	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	0.160000	0.800995	
mm_71181.1	chr8	40862116	40862316	+	1	NA	NA	NA	-151	NM_007514	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.120000	0.691542	
mm_89012.1	chr10	81643727	81643927	+	1	NA	NA	NA	-5242	NM_001142963	100233208	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	ENSMUSG00000074860	predicted gene 10778	protein-coding	0.135000	0.716418	
mm_48809.1	chr5	148969828	148970028	-	1	NA	NA	NA	19678	NR_040686	71473	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	0.035000	0.582090	
mm_33188.1	chr4	126148392	126148592	+	1	NA	NA	NA	489	NM_172145	230752	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0.115000	0.746269	
mm_139549.1	chr17	56793811	56794011	+	1	NA	NA	NA	23635	NM_001195673	100504446	Mm.46157	NM_001195673	ENSMUSG00000090273	Prr22	Gm546	proline rich 22	protein-coding	0.010000	0.527363	
mm_9185.1	chr1	171101018	171101218	-	1	NA	NA	NA	-20543	NM_001081275	75472	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.000000	0.532338	-34(GCTTTAAGACCC,+,0.00)
mm_111573.1	chr12	101818785	101818985	-	1	NA	NA	NA	234	NM_011812	23876	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	0.065000	0.606965	
mm_55873.1	chr6	83506771	83506971	-	1	NA	NA	NA	98	NM_013764	27369	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0.140000	0.686567	
mm_47971.1	chr5	135909379	135909579	-	1	NA	NA	NA	21560	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.045000	0.567164	
mm_155167.1	chrX	53020009	53020209	+	1	NA	NA	NA	27969	NR_030498	751532		NR_030498	ENSMUSG00000076050	Mir450b	Mirn450b|mir-450b	microRNA 450b	ncRNA	0.005000	0.368159	
mm_685.1	chr1	40515377	40515577	+	1	NA	NA	NA	115	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.005000	0.407960	
mm_17534.1	chr2	29751552	29751752	-	1	NA	NA	NA	-9876	NM_001177392	433416	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	OTTMUSG00000012686	predicted gene 13547	protein-coding	0.070000	0.661692	
mm_83226.1	chr9	42330887	42331087	-	1	NA	NA	NA	-66687	NM_172769	235293	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	0.035000	0.572139	
mm_172463.1	chr7	42592471	42592671	-	1	NA	NA	NA	50033	NM_001242388	208111	Mm.387841	NM_001034857	ENSMUSG00000074158	Zfp976	9830147E19Rik|C330019L16Rik	zinc finger protein 976	protein-coding	0.020000	0.552239	
mm_149211.1	chr19	9983003	9983203	+	1	NA	NA	NA	457	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.045000	0.597015	
mm_155887.1	chrX	101639982	101640182	+	1	NA	NA	NA	31	NM_139144	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.060000	0.502488	
mm_64569.1	chr7	144896966	144897166	+	1	NA	NA	NA	534	NM_008003	14170	Mm.3904	NM_008003	ENSMUSG00000031073	Fgf15	FGF19	fibroblast growth factor 15	protein-coding	0.070000	0.597015	
mm_77273.1	chr8	116571790	116571990	-	1	NA	NA	NA	66875	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.030000	0.472637	-74(CCTTTACTGGGC,+,0.00)
mm_37286.1	chr4	119127251	119127451	-	1	NA	NA	NA	18606	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.015000	0.532338	
mm_159407.1	chr3	98762992	98763192	-	1	NA	NA	NA	36	NM_001161743	15494	Mm.158717	NM_001012306	ENSMUSG00000062410	Hsd3b3	9030618K22Rik|AI790201	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 3	protein-coding	0.010000	0.447761	
mm_31660.1	chr4	59933776	59933976	+	1	NA	NA	NA	-18820	NM_021053	30936	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0.005000	0.487562	
mm_118563.1	chr14	18030624	18030824	+	1	NA	NA	NA	49080	NM_009380	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.010000	0.447761	
mm_41200.1	chr5	88328209	88328409	+	1	NA	NA	NA	10997	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.015000	0.477612	
mm_15589.1	chr2	160366137	160366337	+	1	NA	NA	NA	828	NM_010658	16658	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.090000	0.676617	
mm_7615.1	chr1	126738058	126738258	-	1	NA	NA	NA	92474	NM_001081756	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.040000	0.552239	
mm_162767.1	chr10	63998062	63998262	+	1	NA	NA	NA	92093	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.015000	0.343284	
mm_128697.1	chr15	62809194	62809394	-	1	NA	NA	NA	-589843	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.010000	0.427861	
mm_79116.1	chr9	46280574	46280774	+	1	NA	NA	NA	-2338	NM_146000	215051	Mm.32648	NM_146000	ENSMUSG00000032077	Bud13	AV305342|D030060M11Rik	BUD13 homolog	protein-coding	0.000000	0.398010	
mm_9377.1	chr1	172210139	172210339	-	1	NA	NA	NA	-3435	NM_011063	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.015000	0.562189	
mm_168822.1	chr12	22274708	22274908	-	1	NA	NA	NA	-118162	NR_136920	100043416		NM_001004167	ENSMUSG00000093846	Gm4425	EG432637|Gm5433	KRAB-domain protein pseudogene	pseudo	0.120000	0.736318	
mm_125370.1	chr15	39745832	39746032	+	1	NA	NA	NA	2	NM_001289508	75766	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0.010000	0.422886	73(TGCTTTTAAAAG,-,0.00),74(GCTTTTAAAAGA,+,0.00),74(GCTTTTAAAAGA,-,0.00),75(CTTTTAAAAGAA,+,0.00)
mm_35033.1	chr4	4112168	4112368	-	1	NA	NA	NA	26177	NM_001002927	18619	Mm.475097	NM_001002927	ENSMUSG00000045573	Penk	AI326464|ENK|PPA|Penk1	preproenkephalin	protein-coding	0.005000	0.437811	-25(CAACTTAAAAGG,-,0.00)
mm_169667.1	chr15	61288951	61289151	-	1	NA	NA	NA	-367781	NM_001081067	117586	Mm.291499	NM_001081067	ENSMUSG00000022347	A1bg	C44	alpha-1-B glycoprotein	protein-coding	0.010000	0.522388	
mm_164856.1	chr18	49706695	49706895	+	1	NA	NA	NA	48806	NM_026854	68857	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0.000000	0.243781	
mm_133204.1	chr16	73201998	73202198	+	1	NA	NA	NA	538949	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.005000	0.402985	
mm_46461.1	chr5	105118352	105118552	-	1	NA	NA	NA	-8160	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.015000	0.368159	
mm_57344.1	chr6	124747882	124748082	-	1	NA	NA	NA	-6903	NM_013535	14790	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.050000	0.572139	
mm_142084.1	chr17	35731774	35731974	-	1	NA	NA	NA	-27735	NM_172962	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.010000	0.472637	
mm_49498.1	chr6	29746663	29746863	+	1	NA	NA	NA	11266	NM_176996	319757	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	0.000000	0.358209	
mm_227.1	chr1	17628958	17629158	+	1	NA	NA	NA	27157	NM_053191	94227	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	0.000000	0.313433	
mm_38901.1	chr4	149909498	149909698	-	1	NA	NA	NA	45408	NM_029035	74646	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	0.055000	0.577114	
mm_91971.1	chr10	61432841	61433041	-	1	NA	NA	NA	14969	NM_013611	18119	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0.030000	0.547264	
mm_25533.1	chr3	115080931	115081131	+	1	NA	NA	NA	66	NM_153157	229759	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding	0.025000	0.522388	
mm_4478.1	chr1	173427511	173427711	+	1	NA	NA	NA	7007	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.020000	0.497512	
mm_91097.1	chr10	19065058	19065258	-	1	NA	NA	NA	-49748	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.010000	0.462687	
mm_46224.1	chr5	98966695	98966895	-	1	NA	NA	NA	70284	NM_008926	19092	Mm.263002	NM_008926	ENSMUSG00000029334	Prkg2	AW212535|CGKII|Prkgr2|cGK-II	protein kinase, cGMP-dependent, type II	protein-coding	0.020000	0.447761	
mm_118738.1	chr14	22310734	22310934	+	1	NA	NA	NA	231964	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.005000	0.477612	
mm_23748.1	chr3	69386299	69386499	+	1	NA	NA	NA	69481	NM_178726	242083	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	0.000000	0.318408	
mm_145430.1	chr18	58725557	58725757	+	1	NA	NA	NA	66175	NM_025478	66307	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	0.005000	0.427861	
mm_88580.1	chr10	79691089	79691289	+	1	NA	NA	NA	2169	NM_008504	16904	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	0.020000	0.398010	
mm_18435.1	chr2	60845666	60845866	-	1	NA	NA	NA	35672	NM_001141932	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.010000	0.353234	-70(CAATTTAAAAGC,-,0.00)
mm_87893.1	chr10	62066527	62066727	+	1	NA	NA	NA	44386	NM_027251	69894	Mm.294126	NM_027251	ENSMUSG00000020083	2010107G23Rik	AA545165	RIKEN cDNA 2010107G23 gene	protein-coding	0.030000	0.517413	
mm_156824.1	chrX	164162044	164162244	+	1	NA	NA	NA	21664	NM_027286	70008	Mm.13451	NM_027286	ENSMUSG00000015405	Ace2	2010305L05Rik	angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	protein-coding	0.005000	0.398010	
mm_164547.1	chr17	12318711	12318911	-	1	NA	NA	NA	-42	NR_045290	224523	Mm.188855	NR_045290	ENSMUSG00000097350	4732491K20Rik	-	RIKEN cDNA 4732491K20 gene	ncRNA	0.135000	0.741294	
mm_83356.1	chr9	44406888	44407088	-	1	NA	NA	NA	560	NM_021789	60409	Mm.29814	NM_021789	ENSMUSG00000032112	Trappc4	1500017G03Rik|AI303617|HSPC172|PTD009|Sbd|Sbdn|Sdcbp2|TRS23	trafficking protein particle complex 4	protein-coding	0.035000	0.587065	
mm_83275.1	chr9	43071067	43071267	-	1	NA	NA	NA	34551	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0.015000	0.492537	
mm_146350.1	chr18	82559311	82559511	+	1	NA	NA	NA	4903	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.025000	0.547264	
mm_113568.1	chr13	38345000	38345200	+	1	NA	NA	NA	-616	NM_007556	12161	Mm.385759	NM_007556	ENSMUSG00000039004	Bmp6	D13Wsu115e|Vgr1	bone morphogenetic protein 6	protein-coding	0.100000	0.661692	
mm_34824.1	chr4	154964987	154965187	+	1	NA	NA	NA	964	NR_131230	269614	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	0.035000	0.522388	
mm_2690.1	chr1	127487517	127487717	+	1	NA	NA	NA	190404	NM_028135	72160	Mm.281287	NM_028135	ENSMUSG00000026347	Tmem163	2610024A01Rik|SV31	transmembrane protein 163	protein-coding	0.015000	0.422886	
mm_91710.1	chr10	44148753	44148953	-	1	NA	NA	NA	-21594	NR_001582	70365	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	0.070000	0.676617	
mm_70625.1	chr8	13677701	13677901	+	1	NA	NA	NA	-214	NM_009025	19414	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.060000	0.577114	
mm_154494.1	chrM	11086	11286	-	1	NA	NA	NA	NA	NA									0.025000	0.452736	-48(GGCTATAAGTGG,-,0.00)
mm_164489.1	chr16	85550216	85550416	-	1	NA	NA	NA	57	NM_144853	224405	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding	0.045000	0.661692	
mm_12187.1	chr2	65334215	65334415	+	1	NA	NA	NA	29711	NM_177074	320106	Mm.227703	NM_177074	ENSMUSG00000061171	Slc38a11	9330158F14Rik	solute carrier family 38, member 11	protein-coding	0.025000	0.492537	
mm_41010.1	chr5	81021036	81021236	+	1	NA	NA	NA	-457	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.015000	0.417910	
mm_82363.1	chr9	14500396	14500596	-	1	NA	NA	NA	-14	NM_173433	244694	Mm.240457	NM_173433	ENSMUSG00000053914	Kdm4d	4932416A15|Jmjd2d	lysine (K)-specific demethylase 4D	protein-coding	0.055000	0.497512	-33(TTTTTTAAACCG,+,0.00)
mm_31426.1	chr4	48083714	48083914	+	1	NA	NA	NA	32568	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.015000	0.383085	
mm_5995.1	chr1	58721008	58721208	-	1	NA	NA	NA	7822	NM_207653	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.010000	0.457711	
mm_30310.1	chr3	149445297	149445497	-	1	NA	NA	NA	170660	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.025000	0.462687	30(CCTTTTAAATGT,+,0.00)
mm_85321.1	chr9	101251725	101251925	-	1	NA	NA	NA	7	NM_001161362	235542	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0.120000	0.786070	
mm_19128.1	chr2	80129130	80129330	-	1	NA	NA	NA	182	NM_001159582	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.030000	0.462687	
mm_19781.1	chr2	106974246	106974446	-	1	NA	NA	NA	51	NM_001025102	212772	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	0.095000	0.676617	
mm_47070.1	chr5	116446624	116446824	-	1	NA	NA	NA	8002	NR_015595	76798	Mm.444322	NR_015595	ENSMUSG00000086219	Srrm4os	2410137F16Rik	serine/arginine repetitive matrix 4, opposite strand	ncRNA	0.040000	0.597015	24(CCGTAGAAAAGC,-,0.00)
mm_93729.1	chr10	119298591	119298791	-	1	NA	NA	NA	-21543	NR_126086	74905	Mm.399357	NR_126085		4930477N07Rik	-	RIKEN cDNA 4930477N07 gene	ncRNA	0.045000	0.442786	
mm_133056.1	chr16	58415379	58415579	+	1	NA	NA	NA	6944	NM_028523	73379	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.005000	0.557214	
mm_6937.1	chr1	85723722	85723922	-	1	NA	NA	NA	12784	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.005000	0.437811	
mm_69559.1	chr7	135700213	135700413	-	1	NA	NA	NA	16066	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.005000	0.432836	
mm_21909.1	chr2	166573629	166573829	-	1	NA	NA	NA	-98989	NR_105783	102465188		NR_105783	ENSMUSG00000098675	Mir6364	Gm27327|mmu-mir-6364	microRNA 6364	ncRNA	0.015000	0.467662	
mm_4078.1	chr1	166256497	166256697	+	1	NA	NA	NA	2458	NM_001164528	100039795	Mm.101743	NM_001164528	ENSMUSG00000040612	Ildr2	2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|ENSMUSG00000040612|Ll	immunoglobulin-like domain containing receptor 2	protein-coding	0.015000	0.537313	
mm_94763.1	chr11	21220898	21221098	+	1	NA	NA	NA	-18034	NM_139061	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.010000	0.383085	
mm_107931.1	chr12	71137497	71137697	+	1	NA	NA	NA	749	NM_001163378	76967	Mm.87290	NM_029818	ENSMUSG00000034601	2700049A03Rik	Ta3|Talpid3|mKIAA0586	RIKEN cDNA 2700049A03 gene	protein-coding	0.015000	0.303483	
mm_121893.1	chr14	21745120	21745320	-	1	NA	NA	NA	-2341	NM_013849	27389	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.010000	0.537313	
mm_161829.1	chr17	80215756	80215956	+	1	NA	NA	NA	-58	NM_026351	67737	Mm.158172	NM_026351	ENSMUSG00000046196	Ttc39d	4930560E09Rik	tetratricopeptide repeat domain 39D	protein-coding	0.025000	0.487562	
mm_30679.1	chr4	11173757	11173957	+	1	NA	NA	NA	17416	NM_021897	60599	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.010000	0.328358	
mm_31990.1	chr4	89302782	89302982	+	1	NA	NA	NA	7702	NR_132431	102633081	Mm.409388	NR_132431		Gm12610	Gm12609|OTTMUSG00000007716|OTTMUSG00000007717	predicted gene 12610	ncRNA	0.005000	0.383085	
mm_18801.1	chr2	73892468	73892668	-	1	NA	NA	NA	71	NM_001284371	11909	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0.075000	0.621891	-14(GGCCTTTAAAGT,-,0.00),-13(GCCTTTAAAGTG,+,0.00),-12(CCTTTAAAGTGC,+,0.00)
mm_159474.1	chr4	32417172	32417372	+	1	NA	NA	NA	-163	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.015000	0.487562	
mm_58276.1	chr6	145450660	145450860	-	1	NA	NA	NA	-15835	NM_028742	74071	Mm.441497	NM_028742	ENSMUSG00000054966	Lmntd1	4933403M22Rik|AI482300|Ifltd1|Lmna-rs1|Lmna1|OTTMUSG00000022798	lamin tail domain containing 1	protein-coding	0.030000	0.512438	
mm_36644.1	chr4	94331520	94331720	-	1	NA	NA	NA	225176	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.010000	0.447761	
mm_57822.1	chr6	129462739	129462939	-	1	NA	NA	NA	9940	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.383085	
mm_107751.1	chr12	59066820	59067020	+	1	NA	NA	NA	1	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.120000	0.676617	
mm_146075.1	chr18	70568780	70568980	+	1	NA	NA	NA	588	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.080000	0.681592	
mm_50883.1	chr6	56017403	56017603	+	1	NA	NA	NA	-12	NM_011153	19051	Mm.42096	NM_011153	ENSMUSG00000002930	Ppp1r17	G-substrate|Gsbs|Ppp1r2	protein phosphatase 1, regulatory subunit 17	protein-coding	0.030000	0.567164	
mm_32764.1	chr4	116690956	116691156	+	1	NA	NA	NA	-5034	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.005000	0.442786	
mm_172131.1	chr6	3345922	3346122	-	1	NA	NA	NA	53549	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.000000	0.422886	
mm_117290.1	chr13	66905246	66905446	-	1	NA	NA	NA	4	NM_026219	67530	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	0.055000	0.572139	
mm_4560.1	chr1	177447052	177447252	+	1	NA	NA	NA	1331	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.020000	0.527363	
mm_58506.1	chr7	3981044	3981244	+	1	NA	NA	NA	-65643	NR_028115	18726	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	0.000000	0.422886	69(CACTTGAAAAGG,-,0.00)
mm_120137.1	chr14	60299130	60299330	+	1	NA	NA	NA	34025	NM_144843	219135	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	0.000000	0.293532	10(CCTTAAATACTA,+,0.00)
mm_40912.1	chr5	75609294	75609494	+	1	NA	NA	NA	34403	NM_021099	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	KIT proto-oncogene receptor tyrosine kinase	protein-coding	0.060000	0.577114	
mm_133991.1	chr16	4670456	4670656	-	1	NA	NA	NA	9164	NM_030205	78885	Mm.325512	NM_030205	ENSMUSG00000039637	Coro7	0610011B16Rik|AW048373|AW556392	coronin 7	protein-coding	0.015000	0.537313	
mm_30318.1	chr3	151731561	151731761	-	1	NA	NA	NA	18298	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.010000	0.398010	
mm_64537.1	chr7	144175591	144175791	+	1	NA	NA	NA	171	NM_001113373	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.055000	0.631841	
mm_21421.1	chr2	158138777	158138977	-	1	NA	NA	NA	7515	NM_009373	21817	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.015000	0.582090	
mm_89429.1	chr10	91082926	91083126	+	1	NA	NA	NA	-13	NM_027078	67454	Mm.252843	NM_026166	ENSMUSG00000019975	Ikbip	1200009F10Rik|1700023M03Rik|D18354|Ikip	IKBKB interacting protein	protein-coding	0.080000	0.681592	
mm_69856.1	chr7	141434135	141434335	-	1	NA	NA	NA	359	NM_001177576	68267	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0.015000	0.567164	
mm_33000.1	chr4	120517527	120517727	+	1	NA	NA	NA	-14604	NM_177570	194219	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	0.020000	0.482587	
mm_66451.1	chr7	44869503	44869703	-	1	NA	NA	NA	185	NM_133949	84113	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0.170000	0.796020	
mm_172844.1	chr9	33728079	33728279	+	1	NA	NA	NA	-314192	NR_040744	77119	Mm.367930	NR_040744	ENSMUSG00000098758	7630403G23Rik	-	RIKEN cDNA 7630403G23 gene	ncRNA	0.100000	0.592040	
mm_100490.1	chr11	120442577	120442777	+	1	NA	NA	NA	46	NM_145363	208634	Mm.209875	NM_145363	ENSMUSG00000039691	Tspan10	Ocsp	tetraspanin 10	protein-coding	0.020000	0.527363	
mm_69789.1	chr7	141096683	141096883	-	1	NA	NA	NA	3763	NM_023059	24058	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0.010000	0.552239	
mm_91473.1	chr10	34207399	34207599	-	1	NA	NA	NA	52	NM_172508	212898	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.060000	0.646766	
mm_55503.1	chr6	69815033	69815233	-	1	NA	NA	NA	-487959	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.482587	
mm_171368.1	chr4	119169901	119170101	-	1	NA	NA	NA	3855	NM_001145935	195522	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	0.005000	0.472637	
mm_146491.1	chr18	90541337	90541537	+	1	NA	NA	NA	31283	NM_198295	67988	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.005000	0.398010	
mm_115763.1	chr13	19193518	19193718	-	1	NA	NA	NA	202195	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.457711	
mm_24754.1	chr3	95427482	95427682	+	1	NA	NA	NA	233	NR_033637	100043305	Mm.412052	NR_033637		Gm4349	-	SET domain, bifurcated 1 pseudogene	pseudo	0.045000	0.597015	
mm_91244.1	chr10	22306505	22306705	-	1	NA	NA	NA	-115	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.005000	0.517413	
mm_68875.1	chr7	126447112	126447312	-	1	NA	NA	NA	15861	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.020000	0.577114	
mm_172577.1	chr8	11635666	11635866	-	1	NA	NA	NA	-9	NM_001281974	102334	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	0.110000	0.716418	
mm_105600.1	chr11	106752133	106752333	-	1	NA	NA	NA	1007	NM_001033435	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.025000	0.547264	
mm_74125.1	chr8	123186150	123186350	+	1	NA	NA	NA	15	NM_007876	13479	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	0.040000	0.577114	73(CCCTTTTAAAGA,-,0.00),74(CCTTTTAAAGAG,+,0.00)
mm_15563.1	chr2	158609507	158609707	+	1	NA	NA	NA	1116	NR_040358	100045469	Mm.143404	NR_040358	ENSMUSG00000086496	Gm14204	OTTMUSG00000015935	predicted gene 14204	ncRNA	0.020000	0.502488	
mm_33479.1	chr4	130818754	130818954	+	1	NA	NA	NA	26317	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.045000	0.641791	
mm_162561.1	chr1	172206690	172206890	-	1	NA	NA	NA	14	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.070000	0.726368	
mm_138432.1	chr17	35108083	35108283	+	1	NA	NA	NA	-117	NM_148947	114652	Mm.222643	NM_148947	ENSMUSG00000034482	Ly6g5c	G5c|NG33	lymphocyte antigen 6 complex, locus G5C	protein-coding	0.015000	0.577114	
mm_74661.1	chr8	13562304	13562504	-	1	NA	NA	NA	57	NM_025601	66501	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.040000	0.611940	
mm_116302.1	chr13	36726508	36726708	-	1	NA	NA	NA	7869	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.075000	0.616915	
mm_86982.1	chr10	25441300	25441500	+	1	NA	NA	NA	33032	NM_013511	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.015000	0.522388	
mm_168250.1	chr10	82629779	82629979	+	1	NA	NA	NA	37	NR_037190	624784	Mm.284252	NR_037190		Gm9855	ENSMUSG00000051559	thymine DNA glycosylase pseudogene	pseudo	0.125000	0.731343	
mm_72306.1	chr8	77518014	77518214	+	1	NA	NA	NA	-207	NM_030113	78514	Mm.165974	NM_030113	ENSMUSG00000037148	Arhgap10	A930033B01Rik|PSGAP-m|PSGAP-s	Rho GTPase activating protein 10	protein-coding	0.095000	0.691542	
mm_135275.1	chr16	38407621	38407821	-	1	NA	NA	NA	25424	NM_134102	85031	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.010000	0.522388	
mm_128148.1	chr15	31601699	31601899	-	1	NA	NA	NA	5	NM_007637	12465	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	0.100000	0.592040	
mm_66597.1	chr7	45458121	45458321	-	1	NA	NA	NA	1665	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.040000	0.562189	
mm_49589.1	chr6	30643459	30643659	+	1	NA	NA	NA	4341	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.010000	0.502488	
mm_59470.1	chr7	27309186	27309386	+	1	NA	NA	NA	24362	NM_001113549	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.030000	0.616915	
mm_35264.1	chr4	19892468	19892668	-	1	NA	NA	NA	29998	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.005000	0.427861	
mm_27140.1	chr3	32616422	32616622	-	1	NA	NA	NA	13	NM_013531	14696	Mm.139192	NM_013531	ENSMUSG00000027669	Gnb4	6720453A21Rik|G(beta)4	guanine nucleotide binding protein (G protein), beta 4	protein-coding	0.150000	0.800995	
mm_23171.1	chr3	40745485	40745685	+	1	NA	NA	NA	-28	NM_011020	18415	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0.125000	0.706468	
mm_12679.1	chr2	75832238	75832438	+	1	NA	NA	NA	161	NM_172666	228061	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.150000	0.761194	
mm_167821.1	chr9	124408627	124408827	+	1	NA	NA	NA	-14524	NR_027950	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.005000	0.447761	
mm_83113.1	chr9	40376287	40376487	-	1	NA	NA	NA	42915	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.040000	0.641791	
mm_129981.1	chr15	86029878	86030078	-	1	NA	NA	NA	3799	NM_009886	12614	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	0.015000	0.537313	
mm_20236.1	chr2	126151929	126152129	-	1	NA	NA	NA	-25	NM_029455	75823	Mm.444732	NM_029455	ENSMUSG00000027209	Fam227b	4930525F21Rik	family with sequence similarity 227, member B	protein-coding	0.080000	0.671642	
mm_96455.1	chr11	67586458	67586658	+	1	NA	NA	NA	58	NM_001109657	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.010000	0.502488	
mm_142822.1	chr17	51759309	51759509	-	1	NA	NA	NA	52645	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.010000	0.447761	
mm_87871.1	chr10	61418186	61418386	+	1	NA	NA	NA	314	NM_013611	18119	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0.070000	0.626866	
mm_79024.1	chr9	45945235	45945435	+	1	NA	NA	NA	-5745	NR_106055	102465659		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.025000	0.542289	
mm_71021.1	chr8	33516569	33516769	+	1	NA	NA	NA	32358	NR_033589	628431	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	0.060000	0.587065	33(CGGTATATAAGT,-,0.00)
mm_35799.1	chr4	46566352	46566552	-	1	NA	NA	NA	-12	NM_178893	107684	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.010000	0.457711	
mm_69075.1	chr7	126976028	126976228	-	1	NA	NA	NA	214	NM_001347656	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.085000	0.621891	
mm_164714.1	chr17	56079510	56079710	+	1	NA	NA	NA	-21	NM_001304784	15193	Mm.12966	NM_008233	ENSMUSG00000002833	Hdgfrp2	HRP-2	hepatoma-derived growth factor, related protein 2	protein-coding	0.125000	0.676617	
mm_157770.1	chrX	73716354	73716554	-	1	NA	NA	NA	-143	NM_007435	11666	Mm.365	NM_007435	ENSMUSG00000031378	Abcd1	ALDP|Ald|Aldgh	ATP-binding cassette, sub-family D (ALD), member 1	protein-coding	0.075000	0.646766	
mm_160569.1	chr9	56956801	56957001	+	1	NA	NA	NA	5977	NM_178374	66069	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	0.020000	0.412935	
mm_88862.1	chr10	80930850	80931050	+	1	NA	NA	NA	859	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.055000	0.626866	-66(TCTTATATACAC,+,0.00)
mm_147402.1	chr18	44601629	44601829	-	1	NA	NA	NA	-59936	NR_026853	626275	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	0.020000	0.472637	
mm_166087.1	chr4	138967662	138967862	-	1	NA	NA	NA	650	NM_025786	66825	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	0.035000	0.552239	
mm_141308.1	chr17	28350570	28350770	-	1	NA	NA	NA	-70	NM_001098226	21678	Mm.6655	NM_011566	ENSMUSG00000002249	Tead3	DTEF-1|ETFR-1|TEAD-3|TEF-5|Tcf13r2	TEA domain family member 3	protein-coding	0.125000	0.761194	
mm_79267.1	chr9	50753181	50753381	+	1	NA	NA	NA	310	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.040000	0.577114	-80(GCATATATAAGG,-,0.00)
mm_124047.1	chr14	77844258	77844458	-	1	NA	NA	NA	30559	NM_025384	66148	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	0.015000	0.338308	
mm_153862.1	chr19	46573052	46573252	-	1	NA	NA	NA	-67	NM_019718	56350	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	0.100000	0.706468	
mm_152720.1	chr19	17901097	17901297	-	1	NA	NA	NA	-63565	NM_001190483	18552	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding	0.010000	0.452736	
mm_134717.1	chr16	22895240	22895440	-	1	NA	NA	NA	-954	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.030000	0.472637	
mm_35587.1	chr4	42874110	42874310	-	1	NA	NA	NA	-7	NM_177785	277773	Mm.212727	NM_177785	ENSMUSG00000050141	Fam205c	4931430D02|FAM205CP	family with sequence similarity 205, member C	protein-coding	0.010000	0.472637	
mm_158288.1	chrX	112698262	112698462	-	1	NA	NA	NA	289	NM_181579	69693	Mm.34964	NM_181579	ENSMUSG00000034607	Pof1b	2310066B14Rik	premature ovarian failure 1B	protein-coding	0.015000	0.537313	
mm_167540.1	chr9	23026433	23026633	-	1	NA	NA	NA	-196543	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.040000	0.552239	
mm_45635.1	chr5	76658223	76658423	-	1	NA	NA	NA	66609	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.065000	0.582090	
mm_9857.1	chr1	184811060	184811260	-	1	NA	NA	NA	140	NM_001290273	66112	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	0.075000	0.661692	
mm_162746.1	chr10	56389606	56389806	+	1	NA	NA	NA	12406	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.020000	0.343284	
mm_111543.1	chr12	100899272	100899472	-	1	NA	NA	NA	152	NM_001177674	238377	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.050000	0.631841	
mm_87435.1	chr10	51454601	51454801	+	1	NA	NA	NA	-25911	NM_008147	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.000000	0.348259	
mm_131896.1	chr16	23237276	23237476	+	1	NA	NA	NA	11355	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.030000	0.512438	
mm_98189.1	chr11	87793739	87793939	+	1	NA	NA	NA	55	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.010000	0.502488	
mm_17000.1	chr2	18392616	18392816	-	1	NA	NA	NA	114	NM_001190817	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.090000	0.716418	
mm_61862.1	chr7	88430172	88430372	+	1	NA	NA	NA	-1	NM_028238	72433	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	0.050000	0.626866	
mm_57046.1	chr6	122344747	122344947	-	1	NA	NA	NA	-4620	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.015000	0.512438	65(GCTTTTAAGCTC,+,0.00)
mm_117955.1	chr13	99444440	99444640	-	1	NA	NA	NA	-31714	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.557214	
mm_127804.1	chr15	4027307	4027507	-	1	NA	NA	NA	-1	NR_028266	414066	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	0.080000	0.681592	-63(CGCCATATAGGG,-,0.00)
mm_52259.1	chr6	108213005	108213205	+	1	NA	NA	NA	9	NM_010585	16438	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|ENSMUSG00000072853|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0.050000	0.621891	-42(GCCTATATAAGC,-,0.00),-19(GCTTTAAAGTGC,+,0.00)
mm_13501.1	chr2	107306430	107306630	+	1	NA	NA	NA	15941	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding	0.010000	0.333333	
mm_88444.1	chr10	77547149	77547349	+	1	NA	NA	NA	16901	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.045000	0.577114	
mm_67596.1	chr7	83732252	83732452	-	1	NA	NA	NA	3138	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.025000	0.567164	
mm_4094.1	chr1	167308753	167308953	+	1	NA	NA	NA	183	NM_001039483	68944	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	0.100000	0.641791	
mm_10956.1	chr2	25657883	25658083	+	1	NA	NA	NA	31	NM_001042630	13863	Mm.12867	NM_007947	ENSMUSG00000026937	Lcn5	E-RABP|Erabp|MEP10	lipocalin 5	protein-coding	0.000000	0.537313	
mm_20956.1	chr2	151741124	151741324	-	1	NA	NA	NA	86	NM_212446	228769	Mm.146984	NM_144889	ENSMUSG00000032869	Psmf1	AW048666|BC012260|PI31	proteasome (prosome, macropain) inhibitor subunit 1	protein-coding	0.115000	0.606965	
mm_135593.1	chr16	50722738	50722938	-	1	NA	NA	NA	-4294	NR_105782	102466634		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA	0.000000	0.338308	
mm_63417.1	chr7	127470923	127471123	+	1	NA	NA	NA	-591	NM_145589	233895	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.060000	0.552239	39(GGCTTTAAAGAA,-,0.00)
mm_18118.1	chr2	44996765	44996965	-	1	NA	NA	NA	26312	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.457711	
mm_63820.1	chr7	134225050	134225250	+	1	NA	NA	NA	-53	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.115000	0.651741	
mm_118910.1	chr14	26669855	26670055	+	1	NA	NA	NA	-109	NM_178668	211948	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	0.060000	0.577114	
mm_106353.1	chr11	118393486	118393686	-	1	NA	NA	NA	8345	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.020000	0.562189	
mm_141406.1	chr17	29347821	29348021	-	1	NA	NA	NA	11	NM_001347335	56462	Mm.285322	NM_019880	ENSMUSG00000024012	Mtch1	2310034O17Rik|AI255158|AU018396|C77849|PSAP	mitochondrial carrier 1	protein-coding	0.100000	0.721393	
mm_161430.1	chr15	55133342	55133542	+	1	NA	NA	NA	6	NM_001037937	97998	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	0.020000	0.472637	
mm_36004.1	chr4	56757225	56757425	-	1	NA	NA	NA	13903	NM_009611	11470	Mm.30959	NM_009611	ENSMUSG00000070979	Actl7a	Tact2	actin-like 7a	protein-coding	0.005000	0.467662	
mm_36168.1	chr4	61782124	61782324	-	1	NA	NA	NA	0	NM_001135127	100189605	Mm.457980	NM_001135127	ENSMUSG00000078673	Mup19	100039247|Gm12552|Mup11|Mup14|Mup17|Mup6|Mup8|OTTMUSG00000007472	major urinary protein 19	protein-coding	0.020000	0.447761	-34(GAGTATATAAGG,-,0.00)
mm_93930.1	chr10	127166228	127166428	-	1	NA	NA	NA	497	NM_001244618	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.070000	0.626866	
mm_82062.1	chr9	122747108	122747308	+	1	NA	NA	NA	-138	NM_001199736	671232	Mm.296421	NM_001199736	ENSMUSG00000094985	Topaz1	Gm9524	testis and ovary specific PAZ domain containing 1	protein-coding	0.070000	0.696517	
mm_161183.1	chr13	48261461	48261661	+	1	NA	NA	NA	134	NM_031166	15904	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding	0.175000	0.796020	
mm_117368.1	chr13	71394195	71394395	-	1	NA	NA	NA	287206	NR_130325	100316804		NR_130325	ENSMUSG00000080580	Mir466f-4	Mirn466f-4|mmu-mir-466f-4	microRNA 466f-4	ncRNA	0.005000	0.502488	
mm_127633.1	chr15	102470654	102470854	+	1	NA	NA	NA	122	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.085000	0.686567	
mm_57596.1	chr6	127769626	127769826	-	1	NA	NA	NA	-567	NM_201371	381813	Mm.39750	NM_201371	ENSMUSG00000030350	Prmt8	Hrmt1l3|Hrmt1l4	protein arginine N-methyltransferase 8	protein-coding	0.020000	0.562189	
mm_73714.1	chr8	111914049	111914249	+	1	NA	NA	NA	-3950	NM_019950	56773	Mm.432506	NM_019950	ENSMUSG00000031952	Chst5	AI173964|GST-4|Gn6st-3|I-GlcNAc-6-ST	carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5	protein-coding	0.050000	0.487562	
mm_76529.1	chr8	87694786	87694986	-	1	NA	NA	NA	-52676	NR_131165	73557		NR_131165		1700096P03Rik	-	RIKEN cDNA 1700096P03 gene	ncRNA	0.010000	0.472637	
mm_40863.1	chr5	73651258	73651458	+	1	NA	NA	NA	-22	NM_178387	73472	Mm.87067	NM_178387	ENSMUSG00000029155	Spata18	1700067I02Rik	spermatogenesis associated 18	protein-coding	0.105000	0.711443	-8(GGGTATTTATGG,-,0.00),-6(GTATTTATGGCC,+,0.00)
mm_172383.1	chr7	131482698	131482898	+	1	NA	NA	NA	-60165	NM_008257	15373	Mm.323562	NM_008257	ENSMUSG00000040148	Hmx3	Nkx-5.1|Nkx5-1|Nkx5.1	H6 homeobox 3	protein-coding	0.015000	0.412935	
mm_133109.1	chr16	65520411	65520611	+	1	NA	NA	NA	-118	NM_008849	18736	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.015000	0.407960	-56(ATGTATAAATGG,-,0.00)
mm_19780.1	chr2	106970300	106970500	-	1	NA	NA	NA	-9	NM_173750	212772	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	0.000000	0.442786	
mm_146186.1	chr18	75820124	75820324	+	1	NA	NA	NA	46	NM_145356	207259	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0.165000	0.791045	
mm_111004.1	chr12	78861539	78861739	-	1	NA	NA	NA	-1	NM_023721	73834	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	0.085000	0.656716	
mm_27215.1	chr3	35932998	35933198	-	1	NA	NA	NA	-132	NM_001205361	114893	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.120000	0.691542	
mm_23267.1	chr3	51484190	51484390	+	1	NA	NA	NA	324	NM_016858	19338	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.130000	0.701493	
mm_140486.1	chr17	3156261	3156461	-	1	NA	NA	NA	41389	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.030000	0.507463	
mm_36878.1	chr4	107178217	107178417	-	1	NA	NA	NA	49	NM_025617	66526	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0.080000	0.601990	
mm_2996.1	chr1	133231938	133232138	+	1	NA	NA	NA	-14059	NM_001160268	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding	0.000000	0.532338	
mm_78561.1	chr9	35740862	35741062	+	1	NA	NA	NA	-87	NM_001167588	100312949	Mm.475848	NM_001167588	ENSMUSG00000091174	Gm17677	Pate-n|Pate10	predicted gene, 17677	protein-coding	0.000000	0.462687	
mm_40987.1	chr5	77266139	77266339	+	1	NA	NA	NA	745	NM_011263	19712	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.145000	0.786070	
mm_86748.1	chr10	19494623	19494823	+	1	NA	NA	NA	-97226	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.025000	0.467662	
mm_39205.1	chr4	156047852	156048052	-	1	NA	NA	NA	2865	NM_029264	330010	Mm.440232	NM_029264	ENSMUSG00000029074	Ttll10	4833412E22Rik|4930595O22Rik|AU022799|BC042775|Ttll5	tubulin tyrosine ligase-like family, member 10	protein-coding	0.010000	0.522388	
mm_67338.1	chr7	79793120	79793320	-	1	NA	NA	NA	370	NM_008588	17292	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0.115000	0.681592	
mm_40351.1	chr5	45857005	45857205	+	1	NA	NA	NA	435	NM_001163073	209707	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	0.155000	0.781095	
mm_21621.1	chr2	164276021	164276221	-	1	NA	NA	NA	2186	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.040000	0.542289	
mm_39184.1	chr4	155785772	155785972	-	1	NA	NA	NA	2	NM_001033394	320587	Mm.384382	NM_001033394	ENSMUSG00000073680	Tmem88b	A230069A22Rik	transmembrane protein 88B	protein-coding	0.010000	0.542289	
mm_2336.1	chr1	92831747	92831947	+	1	NA	NA	NA	161	NM_016696	14733	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.130000	0.751244	
mm_106403.1	chr11	118909589	118909789	-	1	NA	NA	NA	-117	NM_001039167	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.120000	0.756219	
mm_129150.1	chr15	76229402	76229602	-	1	NA	NA	NA	-5	NM_201385	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.120000	0.771144	-34(GCCTCTTTAAGC,-,0.00)
mm_40014.1	chr5	33104130	33104330	+	1	NA	NA	NA	11	NM_019810	20537	Mm.25237	NM_019810	ENSMUSG00000011034	Slc5a1	Sglt1	solute carrier family 5 (sodium/glucose cotransporter), member 1	protein-coding	0.045000	0.631841	
mm_6837.1	chr1	84232862	84233062	-	1	NA	NA	NA	-14001	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.507463	
mm_88133.1	chr10	69398708	69398908	+	1	NA	NA	NA	-45896	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.095000	0.741294	
mm_67386.1	chr7	79842392	79842592	-	1	NA	NA	NA	-140	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.010000	0.597015	
mm_163596.1	chr13	41569231	41569431	+	1	NA	NA	NA	-36885	NM_001163572	621976	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.020000	0.517413	
mm_20746.1	chr2	140042082	140042282	-	1	NA	NA	NA	24623	NM_001159640	75812	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0.030000	0.472637	
mm_11426.1	chr2	31950196	31950396	+	1	NA	NA	NA	-7	NM_145144	108897	Mm.24838	NM_145144	ENSMUSG00000001864	Aif1l	2810003C17Rik|AI043124|C87647|Iba2	allograft inflammatory factor 1-like	protein-coding	0.090000	0.691542	
mm_165484.1	chr2	164333488	164333688	+	1	NA	NA	NA	823	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.030000	0.487562	-27(CCTTTAAAACCA,+,0.00)
mm_143837.1	chr17	84119113	84119313	-	1	NA	NA	NA	40553	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.015000	0.601990	
mm_139998.1	chr17	72939630	72939830	+	1	NA	NA	NA	21425	NM_029999	77889	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.020000	0.567164	
mm_65493.1	chr7	25689059	25689259	-	1	NA	NA	NA	2157	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.055000	0.611940	
mm_56324.1	chr6	92481089	92481289	-	1	NA	NA	NA	203	NM_001134460	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.040000	0.557214	
mm_164653.1	chr17	35835783	35835983	-	1	NA	NA	NA	2418	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.025000	0.557214	
mm_29836.1	chr3	129804045	129804245	-	1	NA	NA	NA	-115	NM_001287224	242235	Mm.302549	NM_001205102	ENSMUSG00000093865	Lrit3	Gm421	leucine-rich repeat, immunoglobulin-like and transmembrane domains 3	protein-coding	0.025000	0.507463	
mm_132765.1	chr16	44745979	44746179	+	1	NA	NA	NA	284	NM_001159329	66067	Mm.34520	NM_025332	ENSMUSG00000022668	Gtpbp8	0610037H22Rik	GTP-binding protein 8 (putative)	protein-coding	0.115000	0.686567	
mm_38268.1	chr4	136880639	136880839	-	1	NA	NA	NA	5438	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.045000	0.621891	
mm_144074.1	chr17	91088741	91088941	-	1	NA	NA	NA	764	NM_001346957	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.050000	0.641791	
mm_162077.1	chrX	24574760	24574960	-	1	NA	NA	NA	-1555	NM_001100446	100043216		NM_001100446	ENSMUSG00000081218	Gm4297	-	predicted gene 4297	protein-coding	0.010000	0.477612	
mm_8673.1	chr1	156674760	156674960	-	1	NA	NA	NA	-521	NM_023141	30935	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.010000	0.477612	
mm_48352.1	chr5	139345003	139345203	-	1	NA	NA	NA	63	NM_197980	68033	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	0.090000	0.626866	
mm_80564.1	chr9	83834557	83834757	+	1	NA	NA	NA	-32	NM_009445	22137	Mm.1904	NM_009445	ENSMUSG00000038379	Ttk	AL022661|Esk1|Mps1|PYT|esk	Ttk protein kinase	protein-coding	0.080000	0.636816	
mm_115383.1	chr13	113136062	113136262	+	1	NA	NA	NA	86	NR_131045	76720	Mm.54263	NR_131045		1700084D21Rik	-	RIKEN cDNA 1700084D21 gene	ncRNA	0.010000	0.512438	
mm_156757.1	chrX	160502077	160502277	+	1	NA	NA	NA	11	NM_001177879	110094	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	0.110000	0.701493	
mm_82420.1	chr9	14903712	14903912	-	1	NA	NA	NA	139	NM_176807	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.015000	0.567164	
mm_98992.1	chr11	98766168	98766368	+	1	NA	NA	NA	9109	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.020000	0.641791	
mm_125625.1	chr15	61988859	61989059	+	1	NA	NA	NA	3618	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.020000	0.412935	
mm_119317.1	chr14	36969946	36970146	+	1	NA	NA	NA	-1282	NM_027045	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.010000	0.407960	
mm_123824.1	chr14	70618536	70618736	-	1	NA	NA	NA	-67	NM_001252666	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.015000	0.592040	
mm_87008.1	chr10	26827546	26827746	+	1	NA	NA	NA	55134	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.010000	0.422886	
mm_163104.1	chr11	69735465	69735665	-	1	NA	NA	NA	23068	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.015000	0.547264	
mm_88934.1	chr10	81268091	81268291	+	1	NA	NA	NA	19	NM_018758	57267	Mm.293931	NM_018758	ENSMUSG00000004931	Apba3	AW208791|Mint-3|X11gamma|lin-10|mint3	amyloid beta (A4) precursor protein-binding, family A, member 3	protein-coding	0.060000	0.572139	
mm_75044.1	chr8	32819825	32820025	-	1	NA	NA	NA	130101	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding	0.000000	0.323383	
mm_21908.1	chr2	166567154	166567354	-	1	NA	NA	NA	-105464	NR_105783	102465188		NR_105783	ENSMUSG00000098675	Mir6364	Gm27327|mmu-mir-6364	microRNA 6364	ncRNA	0.020000	0.537313	
mm_143085.1	chr17	57078353	57078553	-	1	NA	NA	NA	57	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.015000	0.601990	
mm_172497.1	chr7	64389672	64389872	-	1	NA	NA	NA	2464	NM_026483	67973	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	0.005000	0.482587	
mm_147709.1	chr18	60812185	60812385	-	1	NA	NA	NA	209	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.030000	0.587065	
mm_84240.1	chr9	62282091	62282291	-	1	NA	NA	NA	-12	NM_025721	66712	Mm.263615	NM_025721	ENSMUSG00000046846	Spesp1	4921508E09Rik|AI428149	sperm equatorial segment protein 1	protein-coding	0.080000	0.666667	
mm_41600.1	chr5	96173797	96173997	+	1	NA	NA	NA	-11907	NM_144910	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.000000	0.437811	
mm_34473.1	chr4	148164128	148164328	+	1	NA	NA	NA	3560	NM_176848	230904	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0.090000	0.731343	
mm_41528.1	chr5	92682694	92682894	+	1	NA	NA	NA	-641	NM_015756	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.060000	0.517413	
mm_43889.1	chr5	143932938	143933138	+	1	NA	NA	NA	23037	NM_008886	18861	Mm.2950	NM_008886	ENSMUSG00000075569	Pms2	AW555130|Pmsl2	postmeiotic segregation increased 2 (S. cerevisiae)	protein-coding	0.020000	0.552239	-38(GCCCCTTTAAGA,-,0.00),-36(CCCTTTAAGAGG,-,0.00),-35(CCTTTAAGAGGA,+,0.00)
mm_118038.1	chr13	101692482	101692682	-	1	NA	NA	NA	48	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.040000	0.542289	9(CACCTTAAATGG,-,0.00),11(CCTTAAATGGTG,+,0.00)
mm_24186.1	chr3	88594000	88594200	+	1	NA	NA	NA	14429	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.015000	0.512438	
mm_57059.1	chr6	122488012	122488212	-	1	NA	NA	NA	-1807	NM_027664	108653	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	0.010000	0.487562	
mm_30655.1	chr4	8912924	8913124	+	1	NA	NA	NA	222618	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.000000	0.427861	
mm_132709.1	chr16	43474193	43474393	+	1	NA	NA	NA	-54097	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.010000	0.323383	
mm_13022.1	chr2	91035523	91035723	+	1	NA	NA	NA	-4	NM_009023	19400	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	0.030000	0.626866	
mm_21046.1	chr2	152540157	152540357	-	1	NA	NA	NA	-216	NM_001001444	75400	Mm.45560	NM_001001444	ENSMUSG00000044249	Defb29	0610030I09Rik|BD-29|mBD-29	defensin beta 29	protein-coding	0.020000	0.547264	
mm_60346.1	chr7	44358404	44358604	+	1	NA	NA	NA	16526	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.025000	0.527363	
mm_115247.1	chr13	110396530	110396730	+	1	NA	NA	NA	1586	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.015000	0.462687	
mm_126624.1	chr15	83220439	83220639	+	1	NA	NA	NA	31192	NM_001170954	239559	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	0.010000	0.457711	
mm_21988.1	chr2	167631896	167632096	-	1	NA	NA	NA	9	NM_001311146	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.130000	0.731343	
mm_51163.1	chr6	70726351	70726551	+	1	NA	NA	NA	65724	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.005000	0.452736	
mm_100191.1	chr11	116751614	116751814	+	1	NA	NA	NA	-453	NR_003364	193217	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	0.010000	0.487562	
mm_103268.1	chr11	71740245	71740445	-	1	NA	NA	NA	-10358	NM_177618	216881	Mm.48648	NM_177618	ENSMUSG00000020811	Wscd1	mKIAA0523	WSC domain containing 1	protein-coding	0.005000	0.527363	
mm_123290.1	chr14	61556570	61556770	-	1	NA	NA	NA	216	NM_025697	66674	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0.135000	0.756219	
mm_121362.1	chr14	117269594	117269794	+	1	NA	NA	NA	344397	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.010000	0.487562	
mm_171298.1	chr3	92689268	92689468	+	1	NA	NA	NA	-2158	NM_027137	69611	Mm.176243	NM_027137	ENSMUSG00000103243	Lce1d	2310037L11Rik|AI415320|Sprrl7	late cornified envelope 1D	protein-coding	0.065000	0.601990	
mm_10322.1	chr2	11250368	11250568	+	1	NA	NA	NA	78086	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.010000	0.482587	
mm_64449.1	chr7	142658780	142658980	+	1	NA	NA	NA	-76	NM_010514	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.070000	0.646766	
mm_104718.1	chr11	98053341	98053541	-	1	NA	NA	NA	21	NM_146028	217154	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0.075000	0.701493	
mm_159667.1	chr4	154097057	154097257	-	1	NA	NA	NA	16	NM_001126330	22062	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0.035000	0.577114	
mm_113741.1	chr13	44729436	44729636	+	1	NA	NA	NA	-1238	NM_021878	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.030000	0.537313	
mm_64246.1	chr7	141704177	141704377	+	1	NA	NA	NA	13937	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.010000	0.467662	
mm_16499.1	chr2	181187797	181187997	+	1	NA	NA	NA	554	NM_025598	66496	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0.065000	0.656716	
mm_6848.1	chr1	84245070	84245270	-	1	NA	NA	NA	-26209	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.328358	
mm_56668.1	chr6	113633036	113633236	-	1	NA	NA	NA	-5331	NM_172161	108960	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.015000	0.577114	
mm_82362.1	chr9	14500344	14500544	-	1	NA	NA	NA	38	NM_173433	244694	Mm.240457	NM_173433	ENSMUSG00000053914	Kdm4d	4932416A15|Jmjd2d	lysine (K)-specific demethylase 4D	protein-coding	0.050000	0.452736	-85(TTTTTTAAACCG,+,0.00)
mm_59692.1	chr7	28467801	28468001	+	1	NA	NA	NA	15663	NM_001141921	80749	Mm.483073	NM_030562	ENSMUSG00000030600	Lrfn1	BC004018|SALM2|Semo1	leucine rich repeat and fibronectin type III domain containing 1	protein-coding	0.030000	0.577114	
mm_140202.1	chr17	83729046	83729246	+	1	NA	NA	NA	22983	NM_001171052	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.040000	0.527363	
mm_128800.1	chr15	66865102	66865302	-	1	NA	NA	NA	-26191	NM_018865	22402	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0.015000	0.358209	
mm_67231.1	chr7	74719181	74719381	-	1	NA	NA	NA	-164501	NM_001038643	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.020000	0.467662	
mm_88091.1	chr10	68723642	68723842	+	1	NA	NA	NA	-4	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.030000	0.611940	
mm_15937.1	chr2	165655236	165655436	+	1	NA	NA	NA	38	NM_010165	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	0.030000	0.537313	
mm_40171.1	chr5	35893293	35893493	+	1	NA	NA	NA	74	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	0.095000	0.711443	
mm_39882.1	chr5	31077691	31077891	+	1	NA	NA	NA	15736	NM_011773	22784	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.030000	0.601990	
mm_84928.1	chr9	81633723	81633923	-	1	NA	NA	NA	-1271	NM_010482	15551	Mm.445308	NM_010482	ENSMUSG00000049511	Htr1b	-	5-hydroxytryptamine (serotonin) receptor 1B	protein-coding	0.050000	0.562189	
mm_70442.1	chr8	11727925	11728125	+	1	NA	NA	NA	-80	NM_001113517	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.180000	0.800995	
mm_90600.1	chr10	128322386	128322586	+	1	NA	NA	NA	27	NM_019953	56530	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy FGF signaling regulator 2	protein-coding	0.070000	0.606965	
mm_167677.1	chr9	77917368	77917568	+	1	NA	NA	NA	103	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.100000	0.681592	
mm_9892.1	chr1	186705141	186705341	-	1	NA	NA	NA	748	NM_009367	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.100000	0.676617	
mm_151843.1	chr19	5729559	5729759	-	1	NA	NA	NA	7	NM_181452	17826	Mm.391142	NM_023166	ENSMUSG00000024939	Fam89b	1110021A21Rik|MMTV|Mtvr2	family with sequence similarity 89, member B	protein-coding	0.080000	0.641791	
mm_116560.1	chr13	46727869	46728069	-	1	NA	NA	NA	-120	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.165000	0.721393	
mm_17434.1	chr2	27514970	27515170	-	1	NA	NA	NA	-77	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.080000	0.567164	-31(GCGCCTTAAAGG,-,0.00),-30(CGCCTTAAAGGG,-,0.00),-29(GCCTTAAAGGGG,+,0.00),-28(CCTTAAAGGGGC,+,0.00)
mm_119323.1	chr14	37067961	37068161	+	1	NA	NA	NA	12	NM_173418	239038	Mm.134302	NM_173418	ENSMUSG00000043418	Lrit2	A930010E21Rik|Lrrc22	leucine-rich repeat, immunoglobulin-like and transmembrane domains 2	protein-coding	0.005000	0.422886	
mm_144761.1	chr18	35771513	35771713	+	1	NA	NA	NA	54	NM_019912	56550	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0.120000	0.791045	
mm_15602.1	chr2	160687585	160687785	+	1	NA	NA	NA	41788	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.015000	0.353234	
mm_132267.1	chr16	32877748	32877948	+	1	NA	NA	NA	64	NM_001159349	69823	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	0.135000	0.741294	
mm_153047.1	chr19	32068730	32068930	-	1	NA	NA	NA	34310	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.010000	0.457711	
mm_78156.1	chr9	21027421	21027621	+	1	NA	NA	NA	-1852	NM_023892	78369	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.030000	0.567164	
mm_164267.1	chr15	101228232	101228432	+	1	NA	NA	NA	-3146	NR_045328	380977	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.030000	0.621891	
mm_154564.1	chrX	6400028	6400228	+	1	NA	NA	NA	96	NM_001040459	208431	Mm.23208	NM_001040459	ENSMUSG00000068270	Shroom4	D430043L16Rik|Gm724|Shrm4	shroom family member 4	protein-coding	0.110000	0.771144	
mm_55867.1	chr6	83457433	83457633	-	1	NA	NA	NA	-1141	NM_001347313	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.005000	0.517413	
mm_96098.1	chr11	60444211	60444411	+	1	NA	NA	NA	-10306	NM_021354	13495	Mm.41803	NM_021354	ENSMUSG00000020537	Drg2	AI255295|AI461605	developmentally regulated GTP binding protein 2	protein-coding	0.005000	0.447761	
mm_21274.1	chr2	156886970	156887170	-	1	NA	NA	NA	8	NM_029983	77799	Mm.29264	NM_029983	ENSMUSG00000027636	Sla2	A930009E21Rik|AI430952|SLAP-2|SLAP2	Src-like-adaptor 2	protein-coding	0.020000	0.557214	
mm_34320.1	chr4	141821614	141821814	+	1	NA	NA	NA	4291	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.030000	0.601990	
mm_77641.1	chr8	124369893	124370093	-	1	NA	NA	NA	63943	NM_171824	209966	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	0.020000	0.462687	
mm_3067.1	chr1	134183383	134183583	+	1	NA	NA	NA	1079	NM_007695	12654	Mm.38274	NM_007695	ENSMUSG00000064246	Chil1	AW208766|Brp39|Chi3l1|Gp39	chitinase-like 1	protein-coding	0.040000	0.552239	
mm_123845.1	chr14	70677237	70677437	-	1	NA	NA	NA	-24253	NM_181345	328440	Mm.347749	NM_181345	ENSMUSG00000047911	Npm2	-	nucleophosmin/nucleoplasmin 2	protein-coding	0.000000	0.313433	
mm_23343.1	chr3	54692995	54693195	+	1	NA	NA	NA	-10	NM_019995	56790	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0.070000	0.582090	
mm_163138.1	chr11	79276682	79276882	+	1	NA	NA	NA	-22087	NM_019653	78889	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.005000	0.422886	-33(ACATATAAAAGG,-,0.00)
mm_85793.1	chr9	109832626	109832826	-	1	NA	NA	NA	-68	NM_018757	54369	Mm.12951	NM_018757	ENSMUSG00000032478	Nme6	nm23-M6	NME/NM23 nucleoside diphosphate kinase 6	protein-coding	0.060000	0.636816	
mm_15541.1	chr2	158384883	158385083	+	1	NA	NA	NA	9345	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.015000	0.422886	
mm_8190.1	chr1	138101047	138101247	-	1	NA	NA	NA	73979	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.358209	6(CCTTATAAATAC,+,0.00)
mm_67811.1	chr7	98119422	98119622	-	1	NA	NA	NA	-29	NM_008663	17921	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.025000	0.606965	
mm_39687.1	chr5	26881434	26881634	+	1	NA	NA	NA	-23244	NM_001198886	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.005000	0.308458	
mm_97391.1	chr11	77801240	77801440	+	1	NA	NA	NA	42	NM_001291215	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.035000	0.641791	
mm_124195.1	chr14	98168997	98169197	-	1	NA	NA	NA	668	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.120000	0.726368	
mm_73005.1	chr8	93810794	93810994	+	1	NA	NA	NA	56	NM_001113384	14681	Mm.251445	NM_010308	ENSMUSG00000031748	Gnao1	AW050213|Galphao|Gnao|alphaO	guanine nucleotide binding protein, alpha O	protein-coding	0.095000	0.706468	
mm_25199.1	chr3	103787384	103787584	+	1	NA	NA	NA	3791	NM_001301306	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.020000	0.467662	
mm_102645.1	chr11	62789323	62789523	-	1	NA	NA	NA	-6	NM_138949	192651	Mm.168530	NM_138949	ENSMUSG00000047342	Zfp286	BC027023	zinc finger protein 286	protein-coding	0.060000	0.582090	
mm_6664.1	chr1	80287563	80287763	-	1	NA	NA	NA	53027	NM_001313728	26554	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.005000	0.273632	
mm_152672.1	chr19	14598097	14598297	-	1	NA	NA	NA	-14	NM_001302947	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.110000	0.656716	
mm_89395.1	chr10	89916279	89916479	+	1	NA	NA	NA	42870	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.015000	0.378109	
mm_69925.1	chr7	141902242	141902442	-	1	NA	NA	NA	64	NM_023764	54473	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	0.100000	0.701493	
mm_96214.1	chr11	62457330	62457530	+	1	NA	NA	NA	-98	NM_177229	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.120000	0.716418	
mm_147752.1	chr18	61211353	61211553	-	1	NA	NA	NA	143	NM_007885	13521	Mm.24803	NM_007885	ENSMUSG00000034320	Slc26a2	Dtd|ST-OB	solute carrier family 26 (sulfate transporter), member 2	protein-coding	0.145000	0.746269	-67(GGGTATTAAAGG,-,0.00)
mm_144513.1	chr18	24709365	24709565	+	1	NA	NA	NA	842	NM_001289655	225288	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0.130000	0.800995	
mm_78189.1	chr9	21320664	21320864	+	1	NA	NA	NA	45	NM_001199186	68682	Mm.148425	NM_152808	ENSMUSG00000057193	Slc44a2	1110028E10Rik|CTL2	solute carrier family 44, member 2	protein-coding	0.100000	0.711443	
mm_108120.1	chr12	75818225	75818425	+	1	NA	NA	NA	7	NM_001005510	319565	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0.160000	0.786070	
mm_168502.1	chr11	53271924	53272124	-	1	NA	NA	NA	28455	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.010000	0.373134	
mm_161196.1	chr13	54784083	54784283	+	1	NA	NA	NA	185	NM_001039683	218268	Mm.425821	NM_001033269	ENSMUSG00000074895	Eif4e1b	Eif4eloo|Gm273	eukaryotic translation initiation factor 4E family member 1B	protein-coding	0.020000	0.492537	
mm_119751.1	chr14	54153159	54153359	+	1	NA	NA	NA	100670	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.422886	
mm_33654.1	chr4	133092435	133092635	+	1	NA	NA	NA	-38098	NM_153423	242687	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.040000	0.661692	
mm_46285.1	chr5	100165444	100165644	-	1	NA	NA	NA	-5736	NM_182841	231503	Mm.99790	NM_182841	ENSMUSG00000050640	Tmem150c	-	transmembrane protein 150C	protein-coding	0.010000	0.482587	
mm_26019.1	chr3	135438342	135438542	+	1	NA	NA	NA	223	NR_030689	319587	Mm.358971	NR_030689	ENSMUSG00000097032	4930539J05Rik	8030475D13Rik	RIKEN cDNA 4930539J05 gene	ncRNA	0.075000	0.656716	
mm_97948.1	chr11	83664399	83664599	+	1	NA	NA	NA	1915	NM_013652	20303	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.020000	0.452736	
mm_49441.1	chr6	29319133	29319333	+	1	NA	NA	NA	93	NM_001289664	330277	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	0.005000	0.497512	
mm_169612.1	chr15	37347665	37347865	+	1	NA	NA	NA	-77789	NM_029113	74892	Mm.107630	NM_029113	ENSMUSG00000022288	4930447A16Rik	-	RIKEN cDNA 4930447A16 gene	protein-coding	0.045000	0.512438	5(GCTTTTATATGT,+,0.00)
mm_74880.1	chr8	25088430	25088630	-	1	NA	NA	NA	13281	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.010000	0.557214	
mm_160530.1	chr9	38047317	38047517	+	1	NA	NA	NA	193	NM_001011798	257996	Mm.390162	NM_001011798	ENSMUSG00000095893	Olfr884	MOR162-11P|MOR162-13|MOR162-9P|Olfr1550-ps1	olfactory receptor 884	protein-coding	0.000000	0.457711	
mm_89397.1	chr10	90071006	90071206	+	1	NA	NA	NA	197597	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.025000	0.452736	
mm_109527.1	chr12	111538171	111538371	+	1	NA	NA	NA	170	NM_173363	217869	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.140000	0.786070	
mm_51784.1	chr6	88199596	88199796	+	1	NA	NA	NA	1032	NM_008090	14461	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.110000	0.651741	
mm_116272.1	chr13	34652855	34653055	-	1	NA	NA	NA	32	NR_105041	101056149	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	OTTMUSG00000027716	predicted gene 15908	ncRNA	0.105000	0.696517	
mm_109582.1	chr12	112599290	112599490	+	1	NA	NA	NA	10606	NM_198411	70435	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.005000	0.567164	
mm_22247.1	chr2	174614278	174614478	-	1	NA	NA	NA	-29156	NM_001099328	100043757	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	ENSMUSG00000050600|OTTMUSG00000017459	zinc finger protein 831	protein-coding	0.005000	0.557214	
mm_4216.1	chr1	171315220	171315420	+	1	NA	NA	NA	-13825	NM_001128609	21945	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	0.020000	0.472637	-33(TACTATATAAGC,-,0.00)
mm_120320.1	chr14	63142795	63142995	+	1	NA	NA	NA	20433	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.442786	
mm_14589.1	chr2	136057617	136057817	+	1	NA	NA	NA	-210	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.010000	0.502488	
mm_53185.1	chr6	125432679	125432879	+	1	NA	NA	NA	-52275	NM_198604	213522	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.030000	0.502488	
mm_102319.1	chr11	57506947	57507147	-	1	NA	NA	NA	11597	NM_001168667	67726	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	0.025000	0.492537	
mm_163090.1	chr11	69734610	69734810	-	1	NA	NA	NA	23923	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.010000	0.507463	
mm_100053.1	chr11	115180215	115180415	+	1	NA	NA	NA	7001	NM_025400	66176	Mm.86823	NM_025400	ENSMUSG00000015542	Nat9	1110028N05Rik	N-acetyltransferase 9 (GCN5-related, putative)	protein-coding	0.005000	0.527363	
mm_83808.1	chr9	53536638	53536838	-	1	NA	NA	NA	-67	NM_007499	11920	Mm.5088	NM_007499	ENSMUSG00000034218	Atm	AI256621|C030026E19Rik	ataxia telangiectasia mutated	protein-coding	0.105000	0.616915	66(CTTTATAGAGCC,+,0.00)
mm_11672.1	chr2	35292533	35292733	+	1	NA	NA	NA	10253	NM_146120	227753	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.025000	0.547264	
mm_93285.1	chr10	96181439	96181639	-	1	NA	NA	NA	-44668	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.015000	0.502488	
mm_2010.1	chr1	87127523	87127723	+	1	NA	NA	NA	2615	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.100000	0.681592	
mm_170940.1	chr2	49308090	49308290	+	1	NA	NA	NA	62290	NM_001290656	109241	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630|OTTMUSG00000012483	methyl-CpG binding domain protein 5	protein-coding	0.030000	0.542289	
mm_173138.1	chrX	21261478	21261678	-	1	NA	NA	NA	-39913	NM_001252013	100503481	Mm.272069	NM_001252013		4930453H23Rik	-	RIKEN cDNA 4930453H23 gene	protein-coding	0.075000	0.661692	
mm_64736.1	chr7	4724429	4724629	-	1	NA	NA	NA	553	NM_001142792	330460	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	0.015000	0.462687	
mm_99401.1	chr11	102189755	102189955	+	1	NA	NA	NA	156	NM_175935	68401	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	0.065000	0.656716	-40(GGCTAGAAAGGG,-,0.00)
mm_172759.1	chr8	88587303	88587503	-	1	NA	NA	NA	48725	NM_027840	71607	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	0.010000	0.537313	
mm_48473.1	chr5	140992281	140992481	-	1	NA	NA	NA	8215	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.005000	0.567164	
mm_63267.1	chr7	126759646	126759846	+	1	NA	NA	NA	120	NM_011952	26417	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.105000	0.746269	
mm_92083.1	chr10	62785415	62785615	-	1	NA	NA	NA	6853	NM_026201	67500	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	0.020000	0.492537	-34(CCATTTATACCC,+,0.00)
mm_144130.1	chr18	4920627	4920827	+	1	NA	NA	NA	108241	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA	0.095000	0.636816	
mm_145112.1	chr18	44269981	44270181	+	1	NA	NA	NA	-46	NM_010935	18169	Mm.57234	NM_010935	ENSMUSG00000038071	Npy6r	-	neuropeptide Y receptor Y6	protein-coding	0.010000	0.472637	
mm_164603.1	chr17	29842077	29842277	+	1	NA	NA	NA	45705	NM_001081160	74762	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0.095000	0.696517	
mm_30501.1	chr3	157924768	157924968	-	1	NA	NA	NA	195	NM_145953	107869	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	0.055000	0.557214	
mm_155348.1	chrX	68678617	68678817	+	1	NA	NA	NA	176	NM_001290424	14265	Mm.3451	NM_008031	ENSMUSG00000000838	Fmr1	FMRP|Fmr-1	fragile X mental retardation syndrome 1	protein-coding	0.175000	0.786070	
mm_76235.1	chr8	83574668	83574868	-	1	NA	NA	NA	8010	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.035000	0.631841	
mm_139015.1	chr17	45699485	45699685	+	1	NA	NA	NA	13213	NM_026732	68463	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	0.000000	0.447761	-35(TCCCTTTAAAGG,-,0.00),-34(CCCTTTAAAGGA,+,0.00),-34(CCCTTTAAAGGA,-,0.00),-33(CCTTTAAAGGAG,+,0.00)
mm_25364.1	chr3	107101174	107101374	+	1	NA	NA	NA	-293	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.030000	0.562189	
mm_134768.1	chr16	23520686	23520886	-	1	NA	NA	NA	-196	NM_008555	17174	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0.010000	0.532338	
mm_39146.1	chr4	155361234	155361434	-	1	NA	NA	NA	94	NM_008860	18762	Mm.28561	NM_008860	ENSMUSG00000029053	Prkcz	AI098070|C80388|Pkcz|R74924|aPKCzeta|nPKC-zeta|zetaPKC	protein kinase C, zeta	protein-coding	0.135000	0.751244	
mm_18670.1	chr2	70825673	70825873	-	1	NA	NA	NA	-293	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.165000	0.805970	
mm_23815.1	chr3	79900580	79900780	+	1	NA	NA	NA	14750	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.005000	0.452736	
mm_142718.1	chr17	47924659	47924859	-	1	NA	NA	NA	-127	NM_001110825	74123	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.105000	0.691542	
mm_34682.1	chr4	151404943	151405143	+	1	NA	NA	NA	315473	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	0.015000	0.532338	
mm_37311.1	chr4	119294620	119294820	-	1	NA	NA	NA	-207	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.120000	0.641791	
mm_52441.1	chr6	113624045	113624245	+	1	NA	NA	NA	124	NM_009507	22346	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0.130000	0.716418	
mm_154734.1	chrX	9846861	9847061	+	1	NA	NA	NA	14	NM_026096	67334	Mm.46146	NM_026096	ENSMUSG00000040456	Hypm	1700054O13Rik|H2al3	huntingtin interacting protein M	protein-coding	0.010000	0.522388	
mm_63882.1	chr7	137411049	137411249	+	1	NA	NA	NA	-393	NM_029886	77252	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.045000	0.532338	
mm_162222.1	chrX	144687865	144688065	-	1	NA	NA	NA	215	NM_009428	22067	Mm.82621	NM_009428	ENSMUSG00000041710	Trpc5	CCE2|TRP-5|TRP5|Trrp5	transient receptor potential cation channel, subfamily C, member 5	protein-coding	0.045000	0.611940	
mm_32058.1	chr4	97777476	97777676	+	1	NA	NA	NA	-50	NM_001122953	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.150000	0.855721	
mm_108983.1	chr12	102743934	102744134	+	1	NA	NA	NA	274	NM_177140	320351	Mm.86546	NM_177140	ENSMUSG00000046675	Tmem251	D230037D09Rik	transmembrane protein 251	protein-coding	0.090000	0.616915	
mm_119113.1	chr14	31019069	31019269	+	1	NA	NA	NA	31	NM_001081251	66923	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	0.145000	0.766169	
mm_148910.1	chr19	6974548	6974748	+	1	NA	NA	NA	-400	NM_008889	18938	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.065000	0.601990	
mm_151053.1	chr19	47090921	47091121	+	1	NA	NA	NA	255	NM_011053	18572	Mm.41166	NM_011053	ENSMUSG00000025047	Pdcd11	1110021I22Rik|ALG-4|Pdcd7|mKIAA0185	programmed cell death 11	protein-coding	0.035000	0.562189	
mm_25469.1	chr3	108653883	108654083	+	1	NA	NA	NA	-7	NM_001177770	229725	Mm.214545	NM_145543	ENSMUSG00000027884	Clcc1	Mclc	chloride channel CLIC-like 1	protein-coding	0.130000	0.701493	
mm_9957.1	chr1	191062782	191062982	-	1	NA	NA	NA	50	NM_001163421	68972	Mm.237188	NM_026895	ENSMUSG00000026632	Tatdn3	1500010M24Rik	TatD DNase domain containing 3	protein-coding	0.095000	0.636816	
mm_109477.1	chr12	111423023	111423223	+	1	NA	NA	NA	5678	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.010000	0.482587	
mm_130433.1	chr15	98165515	98165715	-	1	NA	NA	NA	-37	NM_001170711	78541	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0.005000	0.547264	
mm_172486.1	chr7	51879205	51879405	+	1	NA	NA	NA	338	NM_001330607	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.025000	0.661692	
mm_67189.1	chr7	73940405	73940605	-	1	NA	NA	NA	73177	NM_009181	20450	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0.000000	0.457711	
mm_104952.1	chr11	100137678	100137878	-	1	NA	NA	NA	-1829	NM_008469	16665	Mm.440010	NM_008469	ENSMUSG00000054146	Krt15	AI528832|K15|Krt1-15	keratin 15	protein-coding	0.000000	0.452736	-94(GCTTTAATGAGC,+,0.00)
mm_20549.1	chr2	131068858	131069058	-	1	NA	NA	NA	-5144	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.010000	0.442786	
mm_111275.1	chr12	85341480	85341680	-	1	NA	NA	NA	-2218	NM_145138	217718	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.005000	0.407960	
mm_100045.1	chr11	115154106	115154306	+	1	NA	NA	NA	28	NM_021411	58222	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.070000	0.691542	
mm_121329.1	chr14	114945952	114946152	+	1	NA	NA	NA	-104	NR_126548	74982		NR_126548		1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	0.015000	0.398010	
mm_41395.1	chr5	90772375	90772575	+	1	NA	NA	NA	40	NM_019932	56744	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	0.010000	0.522388	
mm_106562.1	chr11	120633265	120633465	-	1	NA	NA	NA	182	NM_010756	17134	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.165000	0.845771	
mm_98924.1	chr11	98348658	98348858	+	1	NA	NA	NA	352	NM_144828	19049	Mm.45372	NM_144828	ENSMUSG00000061718	Ppp1r1b	AU040756|DARPP-32|Darpp32	protein phosphatase 1, regulatory (inhibitor) subunit 1B	protein-coding	0.065000	0.701493	
mm_55687.1	chr6	72690684	72690884	-	1	NA	NA	NA	60953	NR_040421	100038714	Mm.321330	NR_040421		Gm15401	ENSMUSG00000072999|OTTMUSG00000021199	predicted gene 15401	ncRNA	0.030000	0.547264	
mm_169412.1	chr14	52077362	52077562	-	1	NA	NA	NA	8147	NR_028552	100217457		NR_028552	ENSMUSG00000064871	Snord58b	MBII-199	small nucleolar RNA, C/D box 58B	snoRNA	0.035000	0.472637	
mm_37873.1	chr4	132353586	132353786	-	1	NA	NA	NA	0	NR_003270	399101	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0.075000	0.532338	
mm_29865.1	chr3	130061397	130061597	-	1	NA	NA	NA	-590	NM_207209	99683	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.020000	0.482587	
mm_57719.1	chr6	128803008	128803208	-	1	NA	NA	NA	-14467	NM_001159904	17059	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0.050000	0.532338	
mm_161639.1	chr16	94287681	94287881	-	1	NA	NA	NA	75	NM_139145	110948	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.010000	0.373134	
mm_27723.1	chr3	69004360	69004560	-	1	NA	NA	NA	110	NM_026641	68259	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	0.060000	0.522388	
mm_146630.1	chr18	10182040	10182240	-	1	NA	NA	NA	-348	NM_009071	19877	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.120000	0.671642	
mm_67622.1	chr7	84077464	84077664	-	1	NA	NA	NA	8941	NM_030728	80982	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	0.005000	0.378109	
mm_10630.1	chr2	19909677	19909877	+	1	NA	NA	NA	251715	NM_027715	71198	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	0.080000	0.691542	
mm_38359.1	chr4	137883840	137884040	-	1	NA	NA	NA	21703	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.010000	0.487562	
mm_55338.1	chr6	56369481	56369681	-	1	NA	NA	NA	53	NM_001159957	18575	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0.045000	0.507463	
mm_159361.1	chr3	86142493	86142693	-	1	NA	NA	NA	75	NM_016959	20091	Mm.391785	NM_016959	ENSMUSG00000028081	Rps3a1	Rps3a	ribosomal protein S3A1	protein-coding	0.115000	0.601990	
mm_58868.1	chr7	16950034	16950234	+	1	NA	NA	NA	5452	NM_001099636	434128	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	0.065000	0.552239	
mm_160966.1	chr11	99772813	99773013	-	1	NA	NA	NA	0	NM_001126322	100040276	Mm.475095	NM_001126322	ENSMUSG00000078668	Gm11595	OTTMUSG00000002543	predicted gene 11595	protein-coding	0.000000	0.487562	-34(GGGTATAAAAGG,-,0.00)
mm_110071.1	chr12	21417250	21417450	-	1	NA	NA	NA	86	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.140000	0.766169	
mm_152402.1	chr19	10577009	10577209	-	1	NA	NA	NA	-23	NM_001302218	72982	Mm.391194	NM_028411	ENSMUSG00000024666	Tmem138	1700113I01Rik|2900055D14Rik	transmembrane protein 138	protein-coding	0.045000	0.502488	
mm_59221.1	chr7	24610662	24610862	+	1	NA	NA	NA	-566	NM_001102613	232970	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|ENSMUSG00000061511|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	0.055000	0.661692	
mm_442.1	chr1	34849842	34850042	+	1	NA	NA	NA	-17	NM_175421	226971	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.080000	0.626866	
mm_82618.1	chr9	21794895	21795095	-	1	NA	NA	NA	3551	NM_145611	235041	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	0.040000	0.606965	
mm_163034.1	chr11	52241695	52241895	+	1	NA	NA	NA	9800	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.000000	0.313433	
mm_129186.1	chr15	76309696	76309896	-	1	NA	NA	NA	-2551	NM_153122	75475	Mm.322738	NM_153122	ENSMUSG00000022562	Oplah	1700010G02Rik	5-oxoprolinase (ATP-hydrolysing)	protein-coding	0.010000	0.582090	
mm_121108.1	chr14	101378978	101379178	+	1	NA	NA	NA	-179009	NM_029680	76627	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	0.035000	0.407960	
mm_125210.1	chr15	34053657	34053857	+	1	NA	NA	NA	-28962	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.020000	0.477612	-32(CCATATAAAAAC,-,0.00)
mm_147520.1	chr18	52528453	52528653	-	1	NA	NA	NA	1168	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.065000	0.651741	
mm_99754.1	chr11	106750583	106750783	+	1	NA	NA	NA	-543	NM_001271375	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.020000	0.462687	
mm_125513.1	chr15	55886220	55886420	+	1	NA	NA	NA	20629	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding	0.010000	0.338308	
mm_7991.1	chr1	134235110	134235310	-	1	NA	NA	NA	247	NM_001291930	11539	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri	adenosine A1 receptor	protein-coding	0.015000	0.572139	
mm_145420.1	chr18	58555979	58556179	+	1	NA	NA	NA	-161	NM_001081072	225579	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0.015000	0.557214	
mm_286.1	chr1	21291569	21291769	+	1	NA	NA	NA	6643	NR_002858	241041	Mm.290634	NR_002858	ENSMUSG00000025936	Gm4956	EG241041	predicted gene 4956	pseudo	0.010000	0.462687	
mm_111.1	chr1	9601372	9601572	+	1	NA	NA	NA	205	NM_178399	76982	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	0.015000	0.522388	
mm_100676.1	chr11	3409079	3409279	-	1	NA	NA	NA	59	NM_010718	16886	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.090000	0.716418	
mm_91287.1	chr10	24813645	24813845	-	1	NA	NA	NA	22450	NM_134005	209558	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	0.005000	0.333333	
mm_155047.1	chrX	42150911	42151111	+	1	NA	NA	NA	310	NM_021465	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.035000	0.601990	
mm_147241.1	chr18	38338893	38339093	-	1	NA	NA	NA	0	NM_011937	26384	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.110000	0.721393	
mm_32104.1	chr4	98726696	98726896	+	1	NA	NA	NA	42	NM_001081202	381591	Mm.34340	NM_001081202	ENSMUSG00000087166	L1td1	AA546746|AB211064|D76865|ECAT11	LINE-1 type transposase domain containing 1	protein-coding	0.035000	0.606965	
mm_66107.1	chr7	31041531	31041731	-	1	NA	NA	NA	208	NM_001111073	18301	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	0.025000	0.567164	
mm_58524.1	chr7	4147619	4147819	+	1	NA	NA	NA	2153	NM_175529	243813	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.045000	0.557214	
mm_63474.1	chr7	127691563	127691763	+	1	NA	NA	NA	-16824	NR_030428	791073		NR_030428	ENSMUSG00000076454	Mir762	Mirn762|mir-762|mmu-mir-762	microRNA 762	ncRNA	0.025000	0.616915	
mm_138202.1	chr17	34293812	34294012	+	1	NA	NA	NA	-6141	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.010000	0.437811	
mm_31387.1	chr4	48043428	48043628	+	1	NA	NA	NA	-1777	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.085000	0.626866	
mm_152605.1	chr19	11818745	11818945	-	1	NA	NA	NA	558	NM_001286543	20908	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.165000	0.786070	
mm_156889.1	chrX	166440660	166440860	+	1	NA	NA	NA	5	NM_001313722	66226	Mm.279752	NM_025432	ENSMUSG00000079317	Trappc2	1110066L09Rik|1810064C02Rik|AW496358|MIP-2A|Sedl|TRS20	trafficking protein particle complex 2	protein-coding	0.085000	0.636816	
mm_142669.1	chr17	47729180	47729380	-	1	NA	NA	NA	2438	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.015000	0.547264	
mm_104122.1	chr11	86756907	86757107	-	1	NA	NA	NA	485	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.050000	0.512438	
mm_25472.1	chr3	108774793	108774993	+	1	NA	NA	NA	35235	NM_177859	329738	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	0.020000	0.542289	
mm_159750.1	chr5	81660192	81660392	+	1	NA	NA	NA	464421	NR_138557	67327	Mm.87058	NR_138557		1700031L13Rik	-	RIKEN cDNA 1700031L13 gene	ncRNA	0.015000	0.407960	
mm_155703.1	chrX	95558004	95558204	+	1	NA	NA	NA	-117	NM_001313743	70392	Mm.79122	NM_080858	ENSMUSG00000031204	Asb12	2310036C05Rik|Asb-12	ankyrin repeat and SOCS box-containing 12	protein-coding	0.005000	0.422886	
mm_6205.1	chr1	66782141	66782341	-	1	NA	NA	NA	35354	NM_177645	68691	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.000000	0.318408	
mm_125188.1	chr15	32357059	32357259	+	1	NA	NA	NA	112346	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding	0.010000	0.398010	39(ACATTTATAGGC,+,0.00)
mm_162878.1	chr10	99463109	99463309	+	1	NA	NA	NA	-145962	NR_038019	100504202	Mm.403801	NR_038019		Gm20110	-	predicted gene, 20110	ncRNA	0.005000	0.472637	
mm_65425.1	chr7	25297545	25297745	-	1	NA	NA	NA	310	NM_008776	18476	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	0.120000	0.701493	
mm_101292.1	chr11	22047929	22048129	-	1	NA	NA	NA	-46378	NM_011023	18423	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.005000	0.388060	
mm_100014.1	chr11	114881421	114881621	+	1	NA	NA	NA	-8520	NM_001347654	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.005000	0.487562	
mm_47208.1	chr5	120955360	120955560	-	1	NA	NA	NA	40642	NM_133893	100535	Mm.247620	NM_133893	ENSMUSG00000032623	Oas1d	AA536864|C85127|oasl8	2'-5' oligoadenylate synthetase 1D	protein-coding	0.010000	0.582090	
mm_45011.1	chr5	38502037	38502237	-	1	NA	NA	NA	15	NM_145559	117591	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.025000	0.537313	
mm_17038.1	chr2	20671597	20671797	-	1	NA	NA	NA	152184	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.020000	0.487562	
mm_130616.1	chr15	99966984	99967184	-	1	NA	NA	NA	-2981	NM_001080948	207214	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	0.005000	0.398010	
mm_102576.1	chr11	61719888	61720088	-	1	NA	NA	NA	811	NM_001033227	109342	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0.030000	0.542289	
mm_125737.1	chr15	73512527	73512727	+	1	NA	NA	NA	67	NM_001081066	105841	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.095000	0.706468	
mm_71665.1	chr8	60655411	60655611	+	1	NA	NA	NA	-46	NM_001177882	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	0.005000	0.432836	
mm_8113.1	chr1	135919201	135919401	-	1	NA	NA	NA	-94	NM_019645	18772	Mm.4494	NM_019645	ENSMUSG00000026413	Pkp1	-	plakophilin 1	protein-coding	0.070000	0.706468	
mm_74654.1	chr8	13476048	13476248	-	1	NA	NA	NA	18387	NM_019521	14456	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0.030000	0.562189	
mm_166872.1	chr7	25301370	25301570	+	1	NA	NA	NA	111	NM_001081294	623131	Mm.172160	NM_001081294	ENSMUSG00000058741	Prr19	EG623131	proline rich 19	protein-coding	0.040000	0.646766	
mm_61693.1	chr7	81100634	81100834	+	1	NA	NA	NA	-14065	NM_001004184	434203	Mm.389909	NM_001004184	ENSMUSG00000025726	Slc28a1	Cnt1	solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	protein-coding	0.020000	0.517413	
mm_149085.1	chr19	8920339	8920539	+	1	NA	NA	NA	46	NM_024256	72727	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	0.110000	0.766169	
mm_165461.1	chr2	159354351	159354551	+	1	NA	NA	NA	559644	NM_001291144	71715	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	0.005000	0.497512	
mm_6120.1	chr1	64121565	64121765	-	1	NA	NA	NA	-276	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.080000	0.661692	
mm_59659.1	chr7	28187482	28187682	+	1	NA	NA	NA	7266	NM_001271370	13549	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0.020000	0.492537	
mm_93826.1	chr10	121498046	121498246	-	1	NA	NA	NA	-21896	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.020000	0.522388	
mm_89471.1	chr10	93501570	93501770	+	1	NA	NA	NA	12902	NM_010401	15109	Mm.13000	NM_010401	ENSMUSG00000020017	Hal	Hsd|his|histidase	histidine ammonia lyase	protein-coding	0.025000	0.452736	49(GACCTTAAAGGG,-,0.00)
mm_117160.1	chr13	62466717	62466917	-	1	NA	NA	NA	-5	NM_001136496	71508	Mm.442497	NM_178875	ENSMUSG00000055228	Zfp935	8430426H19Rik|Es113	zinc finger protein 935	protein-coding	0.045000	0.527363	
mm_27169.1	chr3	33812635	33812835	-	1	NA	NA	NA	12552	NM_025978	67120	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	0.000000	0.303483	
mm_106191.1	chr11	116808060	116808260	-	1	NA	NA	NA	19886	NM_026280	67622	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0.005000	0.522388	
mm_139726.1	chr17	57476567	57476767	+	1	NA	NA	NA	68647	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.005000	0.368159	
mm_154173.1	chr19	58730410	58730610	-	1	NA	NA	NA	1623	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.010000	0.467662	
mm_87931.1	chr10	62651572	62651772	+	1	NA	NA	NA	-474	NM_053183	94213	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	0.110000	0.701493	
mm_525.1	chr1	37660645	37660845	+	1	NA	NA	NA	59066	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.020000	0.462687	
mm_42455.1	chr5	115435326	115435526	+	1	NA	NA	NA	5741	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.030000	0.621891	
mm_5305.1	chr1	22315704	22315904	-	1	NA	NA	NA	117039	NM_053270	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.000000	0.472637	
mm_134654.1	chr16	22059769	22059969	-	1	NA	NA	NA	50385	NR_027488	75826	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.015000	0.477612	
mm_34204.1	chr4	140924170	140924370	+	1	NA	NA	NA	17910	NM_008812	18600	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	0.030000	0.587065	
mm_152342.1	chr19	9982816	9983016	-	1	NA	NA	NA	270	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.100000	0.651741	
mm_102618.1	chr11	62458609	62458809	-	1	NA	NA	NA	249	NM_001039536	327942	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.030000	0.537313	
mm_11933.1	chr2	52425144	52425344	+	1	NA	NA	NA	-370	NM_182994	75423	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.030000	0.422886	-75(CTCTTTAGAGCC,+,0.00)
mm_45288.1	chr5	64960957	64961157	-	1	NA	NA	NA	-1023	NM_011604	21899	Mm.42146	NM_011604	ENSMUSG00000051498	Tlr6	-	toll-like receptor 6	protein-coding	0.015000	0.547264	
mm_56404.1	chr6	97154939	97155139	-	1	NA	NA	NA	-6156	NM_175313	101351	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	0.005000	0.208955	-98(TTTTTTAAAGCT,+,0.00)
mm_152151.1	chr19	7217465	7217665	-	1	NA	NA	NA	51	NM_007750	12868	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0.110000	0.661692	
mm_9290.1	chr1	171634871	171635071	-	1	NA	NA	NA	6929	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.447761	
mm_113630.1	chr13	42049268	42049468	+	1	NA	NA	NA	-2653	NM_007772	110521	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.025000	0.437811	
mm_122258.1	chr14	34201557	34201757	-	1	NA	NA	NA	-24	NM_183209	432839	Mm.294643	NM_183209	ENSMUSG00000071531	Gprin2	C130040D06Rik|C230073P13|Gm286|mKIAA0514	G protein regulated inducer of neurite outgrowth 2	protein-coding	0.070000	0.731343	
mm_133897.1	chr16	97541405	97541605	+	1	NA	NA	NA	5422	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.005000	0.447761	
mm_33851.1	chr4	135861664	135861864	+	1	NA	NA	NA	5693	NM_010178	14105	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0.025000	0.398010	
mm_119138.1	chr14	31209321	31209521	+	1	NA	NA	NA	1109	NM_009393	21924	Mm.439921	NM_009393	ENSMUSG00000091898	Tnnc1	AI874626|TnC|cTnC|cTnI|tncc	troponin C, cardiac/slow skeletal	protein-coding	0.010000	0.537313	-17(CCCTTTAAAAAT,-,0.00)
mm_164506.1	chr16	93424178	93424378	+	1	NA	NA	NA	34594	NR_040494	72264	Mm.396204	NR_040494	ENSMUSG00000099968	1700029J03Rik	-	RIKEN cDNA 1700029J03 gene	ncRNA	0.015000	0.452736	
mm_86321.1	chr9	123021116	123021316	-	1	NA	NA	NA	-110	NM_025339	66079	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	0.090000	0.641791	
mm_127522.1	chr15	102073541	102073741	+	1	NA	NA	NA	-132	NM_145625	75705	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0.100000	0.631841	
mm_16471.1	chr2	180710219	180710419	+	1	NA	NA	NA	-9	NM_001289651	76425	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	0.155000	0.796020	
mm_6229.1	chr1	66937433	66937633	-	1	NA	NA	NA	-2167	NM_001113387	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.010000	0.447761	
mm_131093.1	chr16	4886211	4886411	+	1	NA	NA	NA	211	NM_001252437	17237	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.135000	0.746269	
mm_27205.1	chr3	35754379	35754579	-	1	NA	NA	NA	341	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.150000	0.796020	
mm_66.1	chr1	6635881	6636081	+	1	NA	NA	NA	-94070	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.348259	
mm_108195.1	chr12	76782174	76782374	+	1	NA	NA	NA	13280	NM_030677	14776	Mm.441856	NM_030677	ENSMUSG00000042808	Gpx2	GI-GPx|GPx-GI|GSHPx-2|GSHPx-GI	glutathione peroxidase 2	protein-coding	0.005000	0.383085	
mm_41299.1	chr5	90464850	90465050	+	1	NA	NA	NA	4080	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.005000	0.447761	
mm_24809.1	chr3	95588841	95589041	+	1	NA	NA	NA	7	NM_001177670	229593	Mm.245830	NM_146133	ENSMUSG00000046519	Golph3l	2010204I15Rik|AU015439|AW549227|C77637|Gpp34r	golgi phosphoprotein 3-like	protein-coding	0.025000	0.497512	
mm_110779.1	chr12	71007212	71007412	-	1	NA	NA	NA	8511	NR_045056	73204	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0.015000	0.388060	
mm_93634.1	chr10	117282171	117282371	-	1	NA	NA	NA	1	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.005000	0.512438	-31(GCTTAAATAGCA,+,0.00)
mm_142133.1	chr17	35909589	35909789	-	1	NA	NA	NA	379	NM_001142745	73242	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	0.025000	0.522388	
mm_112879.1	chr13	20855600	20855800	+	1	NA	NA	NA	61587	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.393035	-44(CTTTTTAAAGTC,+,0.00),29(GCCCATTAAGGA,-,0.00)
mm_12477.1	chr2	71528981	71529181	+	1	NA	NA	NA	-364	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.050000	0.676617	
mm_48027.1	chr5	136245200	136245400	-	1	NA	NA	NA	-360	NM_018825	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.050000	0.606965	9(ACATTTATAGGG,+,0.00)
mm_78723.1	chr9	41579910	41580110	+	1	NA	NA	NA	-1243	NR_015483	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.005000	0.437811	
mm_153407.1	chr19	40561655	40561855	-	1	NA	NA	NA	26708	NM_019698	56454	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	0.080000	0.641791	
mm_24380.1	chr3	90248737	90248937	+	1	NA	NA	NA	645	NM_013901	30791	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0.025000	0.522388	
mm_113976.1	chr13	51800139	51800339	+	1	NA	NA	NA	-6492	NM_013660	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.025000	0.482587	
mm_160590.1	chr9	67539445	67539645	-	1	NA	NA	NA	20158	NM_001081242	70549	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	0.010000	0.517413	
mm_59192.1	chr7	24481934	24482134	+	1	NA	NA	NA	11	NM_153112	260299	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	0.160000	0.815920	
mm_86285.1	chr9	121857821	121858021	-	1	NA	NA	NA	79	NM_019814	56295	Mm.347915	NM_019814	ENSMUSG00000038412	Higd1a	2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1	HIG1 domain family, member 1A	protein-coding	0.110000	0.711443	
mm_43645.1	chr5	138262258	138262458	+	1	NA	NA	NA	-1687	NR_045821	69004	Mm.439868	NR_045821	ENSMUSG00000085227	6330418K02Rik	-	RIKEN cDNA 6330418K02 gene	ncRNA	0.010000	0.557214	
mm_4540.1	chr1	176835426	176835626	+	1	NA	NA	NA	607	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0.050000	0.592040	
mm_138595.1	chr17	35517151	35517351	+	1	NA	NA	NA	135	NM_146248	240084	Mm.49544	NM_146248	ENSMUSG00000040312	Cchcr1	Hcr	coiled-coil alpha-helical rod protein 1	protein-coding	0.060000	0.646766	
mm_165575.1	chr3	22136568	22136768	+	1	NA	NA	NA	60016	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.000000	0.358209	
mm_24631.1	chr3	94310020	94310220	+	1	NA	NA	NA	-12	NM_029431	75778	Mm.45092	NM_029431	ENSMUSG00000028145	Them4	2700077M13Rik|4921507I02Rik	thioesterase superfamily member 4	protein-coding	0.090000	0.636816	
mm_122001.1	chr14	26669741	26669941	-	1	NA	NA	NA	5	NM_178668	211948	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	0.065000	0.527363	
mm_113039.1	chr13	23555525	23555725	+	1	NA	NA	NA	593	NM_145713	14957	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	0.040000	0.572139	
mm_25065.1	chr3	99253239	99253439	+	1	NA	NA	NA	-421	NM_009323	21384	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0.020000	0.587065	
mm_77012.1	chr8	107581195	107581395	-	1	NA	NA	NA	7187	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.010000	0.537313	
mm_76000.1	chr8	72475041	72475241	-	1	NA	NA	NA	92	NM_138585	27967	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	0.130000	0.671642	
mm_41331.1	chr5	90492560	90492760	+	1	NA	NA	NA	1946	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.035000	0.507463	
mm_157588.1	chrX	53114265	53114465	-	1	NA	NA	NA	40	NM_019538	56096	Mm.274842	NM_019538	ENSMUSG00000061082	Plac1	DXWsu72e|Epcs26|Oosp2l	placental specific protein 1	protein-coding	0.025000	0.462687	-70(GCATATATAGAA,+,0.00)
mm_2147.1	chr1	88106737	88106937	+	1	NA	NA	NA	3580	NM_201410	394435	Mm.300095	NM_201410	ENSMUSG00000090145	Ugt1a6b	A9'|Ugt1a9	UDP glucuronosyltransferase 1 family, polypeptide A6B	protein-coding	0.010000	0.482587	
mm_138588.1	chr17	35506163	35506363	+	1	NA	NA	NA	231	NM_013633	18999	Mm.17031	NM_013633	ENSMUSG00000024406	Pou5f1	NF-A3|Oct-3|Oct-3/4|Oct-4|Oct3|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4	POU domain, class 5, transcription factor 1	protein-coding	0.040000	0.626866	
mm_53728.1	chr6	145115537	145115737	+	1	NA	NA	NA	1	NM_001281981	16970	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.020000	0.507463	
mm_110543.1	chr12	55302894	55303094	-	1	NA	NA	NA	6	NM_021529	59032	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	0.065000	0.477612	
mm_74555.1	chr8	10891984	10892184	-	1	NA	NA	NA	-7838	NR_102285	71624	Mm.139075	NR_102285	ENSMUSG00000109089	4833411C07Rik	-	RIKEN cDNA 4833411C07 gene	ncRNA	0.010000	0.457711	
mm_142308.1	chr17	42795844	42796044	-	1	NA	NA	NA	-53765	NM_001033493	435529	Mm.136350	NM_001033493	ENSMUSG00000057899	Adgrf2	Gpr111|PGR20	adhesion G protein-coupled receptor F2	protein-coding	0.010000	0.353234	
mm_131361.1	chr16	13780414	13780614	+	1	NA	NA	NA	-185	NM_001039521	106298	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	0.050000	0.547264	
mm_173047.1	chrX	119509516	119509716	-	1	NA	NA	NA	-417580	NM_053114	93728	Mm.125979	NM_053114	ENSMUSG00000034732	Pabpc5	C820015E17	poly(A) binding protein, cytoplasmic 5	protein-coding	0.025000	0.477612	
mm_164496.1	chr16	91354749	91354949	+	1	NA	NA	NA	-17934	NM_010509	15976	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.015000	0.492537	
mm_55515.1	chr6	70117544	70117744	-	1	NA	NA	NA	674531	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.452736	
mm_52720.1	chr6	119902648	119902848	+	1	NA	NA	NA	50	NM_001166381	19365	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.095000	0.611940	
mm_172964.1	chr9	88731678	88731878	-	1	NA	NA	NA	72	NM_007536	12047	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	0.015000	0.507463	
mm_97443.1	chr11	78188335	78188535	+	1	NA	NA	NA	8	NM_001159482	19376	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	0.055000	0.641791	
mm_75604.1	chr8	61785051	61785251	-	1	NA	NA	NA	-25053	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.000000	0.442786	
mm_167816.1	chr9	124281156	124281356	-	1	NA	NA	NA	31438	NM_001243118	630836	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0.000000	0.437811	
mm_78617.1	chr9	37555540	37555740	+	1	NA	NA	NA	-2895	NM_022029	64011	Mm.335065	NM_022029	ENSMUSG00000053310	Nrgn	0710001B06Rik|AI838505|NG|NG/RC3|Pss1|R75334|RC3	neurogranin	protein-coding	0.005000	0.502488	
mm_68230.1	chr7	104445987	104446187	-	1	NA	NA	NA	19106	NM_009099	20128	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.000000	0.482587	
mm_142101.1	chr17	35835408	35835608	-	1	NA	NA	NA	2793	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.040000	0.592040	
mm_46369.1	chr5	103629188	103629388	-	1	NA	NA	NA	115	NM_029415	75750	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	0.015000	0.477612	
mm_97534.1	chr11	78536407	78536607	+	1	NA	NA	NA	71	NM_018854	55978	Mm.358671	NM_018854	ENSMUSG00000001105	Ift20	0610009H04Rik|AU015496	intraflagellar transport 20	protein-coding	0.085000	0.646766	
mm_4057.1	chr1	165840962	165841162	+	1	NA	NA	NA	52381	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.080000	0.641791	
mm_30283.1	chr3	148988996	148989196	-	1	NA	NA	NA	-34461	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.140000	0.761194	
mm_80300.1	chr9	73192356	73192556	+	1	NA	NA	NA	78987	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0.015000	0.601990	
mm_78625.1	chr9	38718235	38718435	+	1	NA	NA	NA	67	NM_172767	67776	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0.010000	0.407960	-34(CACTTTTAAAGC,-,0.00),-33(ACTTTTAAAGCT,+,0.00),42(CCCTCTAAAAGG,-,0.00)
mm_160071.1	chr7	6363225	6363425	+	1	NA	NA	NA	17	NM_001112805	330463	Mm.136456	NM_177888	ENSMUSG00000055150	Zfp78	A330079D15|KRAB12|Zfp77	zinc finger protein 78	protein-coding	0.070000	0.616915	
mm_7141.1	chr1	91091548	91091748	-	1	NA	NA	NA	38204	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.040000	0.562189	
mm_86222.1	chr9	120134924	120135124	-	1	NA	NA	NA	4590	NR_002902	104433	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	0.030000	0.567164	74(TACCATAAAAGG,-,0.00)
mm_91495.1	chr10	37135881	37136081	-	1	NA	NA	NA	2945	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.005000	0.373134	
mm_44327.1	chr5	11177334	11177534	-	1	NA	NA	NA	-5581	NM_001310021	545728	Mm.109461	NM_001310021	ENSMUSG00000095918	Gm5861	EG545728	predicted gene 5861	protein-coding	0.010000	0.318408	
mm_20499.1	chr2	130397456	130397656	-	1	NA	NA	NA	73	NM_019696	56264	Mm.112701	NM_019696	ENSMUSG00000027408	Cpxm1	AA986902|Cpx-1|Cpx1|Cpxm	carboxypeptidase X 1 (M14 family)	protein-coding	0.105000	0.706468	
mm_86199.1	chr9	119978172	119978372	-	1	NA	NA	NA	6386	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.005000	0.552239	
mm_43559.1	chr5	137629018	137629218	+	1	NA	NA	NA	-5	NM_001168652	231798	Mm.200763	NM_146164	ENSMUSG00000029720	Lrch4	2810008P14Rik|2900069C24Rik|AI558103|LRN|LRRN4|SAP25|mFLJ00248	leucine-rich repeats and calponin homology (CH) domain containing 4	protein-coding	0.085000	0.661692	
mm_104791.1	chr11	98729317	98729517	-	1	NA	NA	NA	18	NM_011869	23989	Mm.246493	NM_011869	ENSMUSG00000017210	Med24	911GSE|AU040102|AW547152|D11Ertd307e|DRIP100|Gse2|Pparb2|Pparbp2|R75526|Thrap4|Trap100	mediator complex subunit 24	protein-coding	0.035000	0.457711	
mm_15631.1	chr2	162987407	162987607	+	1	NA	NA	NA	26	NM_013731	27219	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	0.020000	0.582090	
mm_89777.1	chr10	100592274	100592474	+	1	NA	NA	NA	-12	NM_001081246	66605	Mm.72646	NM_001081246	ENSMUSG00000056912	1700017N19Rik	-	RIKEN cDNA 1700017N19 gene	protein-coding	0.000000	0.328358	
mm_153055.1	chr19	32108076	32108276	-	1	NA	NA	NA	-5036	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.075000	0.686567	
mm_43303.1	chr5	134613895	134614095	+	1	NA	NA	NA	1030	NM_022964	56743	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0.035000	0.537313	
mm_111288.1	chr12	85455086	85455286	-	1	NA	NA	NA	-18715	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.035000	0.621891	
mm_85785.1	chr9	109059641	109059841	-	1	NA	NA	NA	-18	NM_011637	22040	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	0.020000	0.542289	
mm_154990.1	chrX	38316085	38316285	+	1	NA	NA	NA	63	NM_133690	67821	Mm.60134	NM_133690	ENSMUSG00000016327	Atp1b4	1110020B02Rik	ATPase, (Na+)/K+ transporting, beta 4 polypeptide	protein-coding	0.030000	0.557214	
mm_139603.1	chr17	57281807	57282007	+	1	NA	NA	NA	2807	NM_001163815	22324	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.000000	0.422886	
mm_9450.1	chr1	172602432	172602632	-	1	NA	NA	NA	19	NM_001164725	677296	Mm.439612	NM_001164725	ENSMUSG00000070504	Fcrl6	ENSMUSG00000070504|FcRH6|mIFGP6|moFcRH6	Fc receptor-like 6	protein-coding	0.000000	0.532338	
mm_23604.1	chr3	65188028	65188228	+	1	NA	NA	NA	25	NM_001289450	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.005000	0.353234	
mm_66598.1	chr7	45458246	45458446	-	1	NA	NA	NA	1540	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.010000	0.487562	-7(TTTTTTAAAGCT,+,0.00)
mm_63715.1	chr7	130716671	130716871	+	1	NA	NA	NA	24215	NM_021314	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.025000	0.582090	
mm_124946.1	chr15	12349985	12350185	+	1	NA	NA	NA	28589	NM_025673	66629	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.010000	0.542289	
mm_101199.1	chr11	19018316	19018516	-	1	NA	NA	NA	553	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.045000	0.487562	-33(GCTTTTATGCTC,+,0.00)
mm_136111.1	chr16	85497172	85497372	-	1	NA	NA	NA	53101	NM_144853	224405	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding	0.005000	0.393035	
mm_167989.1	chrX	170009558	170009758	+	1	NA	NA	NA	-30741	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.170000	0.825871	
mm_97232.1	chr11	75655663	75655863	+	1	NA	NA	NA	-252	NM_001080775	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.095000	0.636816	
mm_121908.1	chr14	21987791	21987991	-	1	NA	NA	NA	1710	NM_145459	218820	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.085000	0.646766	
mm_109645.1	chr12	112829055	112829255	+	1	NA	NA	NA	234	NM_028023	71963	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	0.135000	0.741294	
mm_93205.1	chr10	94855392	94855592	-	1	NA	NA	NA	89086	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.000000	0.348259	
mm_71343.1	chr8	45627825	45628025	+	1	NA	NA	NA	174	NM_001310707	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.055000	0.587065	
mm_168213.1	chr10	75860142	75860342	-	1	NA	NA	NA	8	NM_010798	17319	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor	protein-coding	0.095000	0.641791	
mm_40547.1	chr5	58044274	58044474	+	1	NA	NA	NA	326293	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.015000	0.457711	
mm_49938.1	chr6	39592479	39592679	+	1	NA	NA	NA	-4	NM_026612	68198	Mm.29415	NM_026612	ENSMUSG00000002416	Ndufb2	1810011O01Rik|8kDa|AGGG|AI325567|CI-AGGG	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2	protein-coding	0.095000	0.656716	
mm_5187.1	chr1	13103971	13104171	-	1	NA	NA	NA	23092	NM_001081209	383491	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0.035000	0.567164	
mm_62386.1	chr7	100862639	100862839	+	1	NA	NA	NA	674	NM_177073	320100	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.020000	0.567164	
mm_155242.1	chrX	57213945	57214145	+	1	NA	NA	NA	1902	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.005000	0.388060	
mm_30290.1	chr3	148989443	148989643	-	1	NA	NA	NA	-34908	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.050000	0.636816	
mm_116371.1	chr13	40733702	40733902	-	1	NA	NA	NA	21	NM_011547	21418	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.055000	0.626866	
mm_29808.1	chr3	127790110	127790310	-	1	NA	NA	NA	297	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.025000	0.597015	
mm_7124.1	chr1	90843850	90844050	-	1	NA	NA	NA	21	NM_001243009	12835	Mm.7562	NM_009935	ENSMUSG00000048126	Col6a3	AI507288|Col6a-3	collagen, type VI, alpha 3	protein-coding	0.015000	0.592040	
mm_147900.1	chr18	65349667	65349867	-	1	NA	NA	NA	44121	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.015000	0.537313	
mm_106058.1	chr11	116125229	116125429	-	1	NA	NA	NA	5799	NM_178802	338364	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0.005000	0.378109	
mm_26811.1	chr3	10205951	10206151	-	1	NA	NA	NA	2525	NM_024406	11770	Mm.582	NM_024406	ENSMUSG00000062515	Fabp4	422/aP2|ALBP/Ap2|Ap2|Lbpl	fatty acid binding protein 4, adipocyte	protein-coding	0.040000	0.487562	
mm_95748.1	chr11	54866336	54866536	+	1	NA	NA	NA	-2	NM_008248	15254	Mm.425	NM_008248	ENSMUSG00000020267	Hint1	AA673479|Hint|Ipk1|PKCI-1|PRKCNH1	histidine triad nucleotide binding protein 1	protein-coding	0.160000	0.741294	
mm_124627.1	chr15	3637323	3637523	+	1	NA	NA	NA	-54071	NM_010284	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.005000	0.378109	47(TCTTTTATATCC,+,0.00)
mm_26659.1	chr3	154597258	154597458	+	1	NA	NA	NA	-260	NM_172474	209584	Mm.347513	NM_172474	ENSMUSG00000047583	Tyw3	5230400J09Rik	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	protein-coding	0.025000	0.512438	
mm_113792.1	chr13	46060514	46060714	+	1	NA	NA	NA	-95623	NM_009124	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.020000	0.507463	
mm_90379.1	chr10	127266202	127266402	+	1	NA	NA	NA	40	NM_001190453	69654	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	0.080000	0.636816	
mm_43276.1	chr5	130677461	130677661	+	1	NA	NA	NA	228769	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.000000	0.393035	83(CTCTAGTAAAGG,-,0.00)
mm_23582.1	chr3	63963537	63963737	+	1	NA	NA	NA	1096	NM_001331067	11416	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	0.035000	0.452736	
mm_93065.1	chr10	89257421	89257621	-	1	NA	NA	NA	269	NM_001277188	320091	Mm.236464	NM_178773	ENSMUSG00000035189	Ano4	A330096O15Rik|Gm65|Tmem16d	anoctamin 4	protein-coding	0.025000	0.497512	
mm_122821.1	chr14	54653582	54653782	-	1	NA	NA	NA	3	NM_001242605	56215	Mm.297078	NM_019567	ENSMUSG00000022185	Acin1	2610036I19Rik|2610510L13Rik|Acinus|Acn|C79325|acinusL|acinusS|mKIAA0670	apoptotic chromatin condensation inducer 1	protein-coding	0.030000	0.601990	
mm_17489.1	chr2	28583113	28583313	-	1	NA	NA	NA	66	NM_148928	70239	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0.060000	0.532338	
mm_51921.1	chr6	91265785	91265985	+	1	NA	NA	NA	53121	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.025000	0.582090	
mm_4071.1	chr1	166154912	166155112	+	1	NA	NA	NA	24552	NM_021610	59290	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197	glycoprotein A33 (transmembrane)	protein-coding	0.015000	0.557214	
mm_141542.1	chr17	31870692	31870892	-	1	NA	NA	NA	-15000	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.020000	0.497512	
mm_161099.1	chr12	99886563	99886763	+	1	NA	NA	NA	2148	NM_028354	104884	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	0.015000	0.502488	
mm_170430.1	chr18	75899729	75899929	+	1	NA	NA	NA	79651	NM_145356	207259	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0.020000	0.552239	
mm_57174.1	chr6	122847773	122847973	-	1	NA	NA	NA	8284	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.005000	0.398010	
mm_153564.1	chr19	42431654	42431854	-	1	NA	NA	NA	29	NM_145123	72832	Mm.313558	NM_145123	ENSMUSG00000042401	Crtac1	2810454P21Rik|AW047536|Crtac1B|Lotus	cartilage acidic protein 1	protein-coding	0.145000	0.741294	
mm_142586.1	chr17	46726614	46726814	-	1	NA	NA	NA	2451	NM_010321	14711	Mm.29395	NM_010321	ENSMUSG00000002769	Gnmt	-	glycine N-methyltransferase	protein-coding	0.010000	0.532338	
mm_43683.1	chr5	138808762	138808962	+	1	NA	NA	NA	-11218	NM_001195128	384244	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0.005000	0.472637	
mm_15761.1	chr2	164289167	164289367	+	1	NA	NA	NA	0	NM_001311114	64335	Mm.389393	NM_021363	ENSMUSG00000017003	Svs3a	9530026M05Rik|BB121242|Semg2|Svp-3|Svp3|Svs3	seminal vesicle secretory protein 3A	protein-coding	0.000000	0.457711	
mm_21321.1	chr2	157099283	157099483	-	1	NA	NA	NA	12328	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.015000	0.343284	
mm_51065.1	chr6	65952491	65952691	+	1	NA	NA	NA	20	NM_001161773	67653	Mm.389756	NM_001161773	ENSMUSG00000036463	4930544G11Rik	-	RIKEN cDNA 4930544G11 gene	protein-coding	0.035000	0.577114	
mm_6571.1	chr1	75191910	75192110	-	1	NA	NA	NA	0	NM_001003917	245860	Mm.238266	NM_001003917	ENSMUSG00000033124	Atg9a	AU019532|Apg9l1|Atg9|Atg9l1	autophagy related 9A	protein-coding	0.030000	0.592040	
mm_35571.1	chr4	41640292	41640492	-	1	NA	NA	NA	-90	NM_027147	69638	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.080000	0.676617	
mm_54810.1	chr6	42323260	42323460	-	1	NA	NA	NA	1280	NM_001286584	76156	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	0.020000	0.502488	
mm_96743.1	chr11	69846535	69846735	+	1	NA	NA	NA	-9	NR_033133	70310	Mm.28874	NM_023564	ENSMUSG00000019461	Plscr3	2210403O21Rik|2610037N06Rik|ESTM3|X83310	phospholipid scramblase 3	protein-coding	0.075000	0.696517	
mm_134287.1	chr16	14215789	14215989	-	1	NA	NA	NA	52614	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.010000	0.537313	
mm_39518.1	chr5	21257744	21257944	+	1	NA	NA	NA	71577	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.025000	0.512438	
mm_43992.1	chr5	146795823	146796023	+	1	NA	NA	NA	-967	NM_011669	22217	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.025000	0.467662	
mm_15493.1	chr2	157788454	157788654	+	1	NA	NA	NA	51153	NM_025680	66642	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	0.015000	0.522388	
mm_146847.1	chr18	23954489	23954689	-	1	NA	NA	NA	-99	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.110000	0.641791	
mm_154520.1	chrM	13078	13278	-	1	NA	NA	NA	NA	NA									0.015000	0.378109	79(GGGTTTATGAGG,-,0.00)
mm_83243.1	chr9	42399741	42399941	-	1	NA	NA	NA	88	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.040000	0.447761	
mm_76028.1	chr8	75406489	75406689	-	1	NA	NA	NA	-42105	NM_027944	71831	Mm.443238	NM_027944	ENSMUSG00000031620	1700007B14Rik	-	RIKEN cDNA 1700007B14 gene	protein-coding	0.025000	0.452736	-32(CCCTAAAAAGCA,+,0.00)
mm_34392.1	chr4	144981315	144981515	+	1	NA	NA	NA	88278	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.005000	0.482587	
mm_121681.1	chr14	12823045	12823245	-	1	NA	NA	NA	-66	NM_012061	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	0.070000	0.587065	
mm_35432.1	chr4	36664852	36665052	-	1	NA	NA	NA	-3558	NR_105849	102465229		NR_105849	ENSMUSG00000106425	Mir873b	mmu-mir-873b	microRNA 873b	ncRNA	0.005000	0.398010	
mm_67382.1	chr7	79842195	79842395	-	1	NA	NA	NA	57	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.025000	0.577114	
mm_20742.1	chr2	138112100	138112300	-	1	NA	NA	NA	-144384	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.010000	0.333333	-38(GTTTTTATAGCA,+,0.00)
mm_109135.1	chr12	106010207	106010407	+	1	NA	NA	NA	44	NM_001029843	22367	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0.105000	0.661692	
mm_81895.1	chr9	119796541	119796741	+	1	NA	NA	NA	28815	NM_011887	24046	Mm.89981	NM_011887	ENSMUSG00000034115	Scn11a	NSS2|NaN|NaT|NaV1.9|SNS2	sodium channel, voltage-gated, type XI, alpha	protein-coding	0.015000	0.492537	
mm_70588.1	chr8	13172491	13172691	+	1	NA	NA	NA	13430	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.015000	0.497512	
mm_160798.1	chr11	4746436	4746636	-	1	NA	NA	NA	242	NM_138948	192650	Mm.207056	NM_138948	ENSMUSG00000009075	Cabp7	-	calcium binding protein 7	protein-coding	0.130000	0.791045	
mm_82810.1	chr9	29963108	29963308	-	1	NA	NA	NA	-79	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.020000	0.502488	
mm_37636.1	chr4	127534562	127534762	-	1	NA	NA	NA	-176498	NM_010291	14622	Mm.26859	NM_010291	ENSMUSG00000042357	Gjb5	Cnx31.1|Cx31.1|Gjb-5	gap junction protein, beta 5	protein-coding	0.015000	0.467662	
mm_97788.1	chr11	82785274	82785474	+	1	NA	NA	NA	4265	NM_010716	16882	Mm.277136	NM_010716	ENSMUSG00000020697	Lig3	D11Wsu78e	ligase III, DNA, ATP-dependent	protein-coding	0.015000	0.487562	
mm_71.1	chr1	6670218	6670418	+	1	NA	NA	NA	-59733	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.422886	
mm_165761.1	chr3	117574746	117574946	+	1	NA	NA	NA	-381	NM_029425	75769	Mm.72187	NM_029425	ENSMUSG00000033342	Plppr5	4833424O15Rik|Lppr5|PRG-5|Pap2d	phospholipid phosphatase related 5	protein-coding	0.010000	0.487562	
mm_64867.1	chr7	13570967	13571167	-	1	NA	NA	NA	0	NM_001080942	77684	Mm.190482	NM_001080942	ENSMUSG00000078800	Bsph2	9230107M04Rik|Bsph2a	binder of sperm protein homolog 2	protein-coding	0.000000	0.467662	
mm_121616.1	chr14	8259202	8259402	-	1	NA	NA	NA	-283	NM_053115	93732	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0.010000	0.562189	
mm_133263.1	chr16	77340561	77340761	+	1	NA	NA	NA	11333	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.000000	0.353234	
mm_145418.1	chr18	58555929	58556129	+	1	NA	NA	NA	-211	NM_001081072	225579	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0.025000	0.597015	
mm_37324.1	chr4	119415379	119415579	-	1	NA	NA	NA	42	NM_001270435	73332	Mm.425204	NM_028506	ENSMUSG00000028637	Ccdc30	1700001O02Rik|1700041C02Rik|1700111D19Rik|4930445I03Rik	coiled-coil domain containing 30	protein-coding	0.080000	0.671642	
mm_27480.1	chr3	53657204	53657404	-	1	NA	NA	NA	51	NM_172862	242022	Mm.38378	NM_172862	ENSMUSG00000037016	Frem2	6030440P17Rik|8430406N05Rik|Gm409|b2b1562Clo|my|ne|nv1	Fras1 related extracellular matrix protein 2	protein-coding	0.065000	0.631841	
mm_26605.1	chr3	152214188	152214388	+	1	NA	NA	NA	3830	NM_057172	51886	Mm.278922	NM_057172	ENSMUSG00000028034	Fubp1	9530027K12Rik|D3Ertd330e|FBP|Fubp|Fubp4	far upstream element (FUSE) binding protein 1	protein-coding	0.000000	0.263682	-85(ACCTAGAAAAGG,-,0.00)
mm_50915.1	chr6	57598511	57598711	+	1	NA	NA	NA	17619	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.010000	0.492537	
mm_87399.1	chr10	45452046	45452246	+	1	NA	NA	NA	18055	NM_001031772	380669	Mm.440328	NM_001031772	ENSMUSG00000063804	Lin28b	2810403D23Rik|D030047M17Rik|Lin-28.2	lin-28 homolog B (C. elegans)	protein-coding	0.000000	0.328358	-23(CCCTTTCAAGGC,+,0.00),24(CCCTATAAATGA,-,0.00)
mm_63954.1	chr7	139907019	139907219	+	1	NA	NA	NA	12423	NM_177261	76484	Mm.44442	NM_177261	ENSMUSG00000066129	Kndc1	2410012C07Rik|B830014K08Rik|VKIND|very-kind	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding	0.000000	0.507463	
mm_149929.1	chr19	26750861	26751061	+	1	NA	NA	NA	2558	NM_026003	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.005000	0.283582	-91(CTTTTTAAAGAA,+,0.00)
mm_135880.1	chr16	63864005	63864205	-	1	NA	NA	NA	52	NM_010140	13837	Mm.1977	NM_010140	ENSMUSG00000052504	Epha3	AW492086|Cek4|ETK1|End3|Hek|Hek4|Mek4|Tyro4	Eph receptor A3	protein-coding	0.045000	0.562189	
mm_122074.1	chr14	30599325	30599525	-	1	NA	NA	NA	10885	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.055000	0.587065	
mm_101501.1	chr11	32199179	32199379	-	1	NA	NA	NA	1000	NM_001134458	16199	Mm.384	NM_008374	ENSMUSG00000020279	Il9r	-	interleukin 9 receptor	protein-coding	0.015000	0.616915	
mm_118354.1	chr13	115056423	115056623	-	1	NA	NA	NA	33635	NM_134058	105083	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota homolog (Drosophila)	protein-coding	0.005000	0.283582	
mm_127946.1	chr15	10714707	10714907	-	1	NA	NA	NA	-29	NR_045063	75259	Mm.33928	NR_045063	ENSMUSG00000097058	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	0.100000	0.756219	
mm_58983.1	chr7	19076305	19076505	+	1	NA	NA	NA	205	NM_010058	13401	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0.165000	0.781095	
mm_31198.1	chr4	43669177	43669377	+	1	NA	NA	NA	306	NM_001085508	242409	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	0.115000	0.721393	
mm_61787.1	chr7	83883534	83883734	+	1	NA	NA	NA	707	NM_030705	80889	Mm.272998	NM_030705	ENSMUSG00000070462	Mesdc1	AW061151	mesoderm development candidate 1	protein-coding	0.110000	0.701493	
mm_89640.1	chr10	96621800	96622000	+	1	NA	NA	NA	4899	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.015000	0.402985	
mm_85846.1	chr9	110645213	110645413	-	1	NA	NA	NA	8848	NM_183276	235627	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0.030000	0.532338	
mm_363.1	chr1	33907943	33908143	+	1	NA	NA	NA	-182	NM_001276764	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.150000	0.781095	
mm_151484.1	chr19	58677043	58677243	+	1	NA	NA	NA	6778	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.020000	0.457711	
mm_41319.1	chr5	90471965	90472165	+	1	NA	NA	NA	11195	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.457711	84(TCTTTTAAACAC,+,0.00)
mm_28580.1	chr3	93465259	93465459	-	1	NA	NA	NA	-3395	NM_027762	71325	Mm.68064	NM_027762	ENSMUSG00000027908	Tchhl1	5430400H23Rik|AA589420|S100a17|Thhl1	trichohyalin-like 1	protein-coding	0.015000	0.388060	
mm_156504.1	chrX	146610804	146611004	+	1	NA	NA	NA	-351609	NM_008312	15560	Mm.439670	NM_008312	ENSMUSG00000041380	Htr2c	5-HT2C|5-HT2cR|5-HTR2C|5HT1c|Htr1c|SR1	5-hydroxytryptamine (serotonin) receptor 2C	protein-coding	0.000000	0.368159	
mm_708.1	chr1	40771288	40771488	+	1	NA	NA	NA	19269	NM_172499	211798	Mm.235443	NM_172499	ENSMUSG00000041945	Mfsd9	4931419K03Rik	major facilitator superfamily domain containing 9	protein-coding	0.010000	0.502488	
mm_32404.1	chr4	106911423	106911623	+	1	NA	NA	NA	53	NM_023672	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.185000	0.805970	
mm_76987.1	chr8	107048502	107048702	-	1	NA	NA	NA	12	NM_026513	68023	Mm.482335	NM_026513	ENSMUSG00000078931	Pdf	2610019N19Rik	peptide deformylase (mitochondrial)	protein-coding	0.135000	0.726368	
mm_119766.1	chr14	54173474	54173674	+	1	NA	NA	NA	80355	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.557214	
mm_942.1	chr1	56971378	56971578	+	1	NA	NA	NA	9	NR_024325	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0.070000	0.686567	
mm_159578.1	chr4	118543850	118544050	-	1	NA	NA	NA	-224	NM_172383	230678	Mm.23639	NM_172383	ENSMUSG00000050854	Tmem125	6330530A05Rik|AV223516	transmembrane protein 125	protein-coding	0.055000	0.626866	
mm_90634.1	chr10	128489002	128489202	+	1	NA	NA	NA	3907	NM_001317220	17904	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.010000	0.527363	
mm_117442.1	chr13	74734161	74734361	-	1	NA	NA	NA	0	NM_001301158	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.010000	0.497512	
mm_38187.1	chr4	135325873	135326073	-	1	NA	NA	NA	27241	NM_016799	51796	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.000000	0.358209	
mm_114043.1	chr13	54071785	54071985	+	1	NA	NA	NA	40	NM_027324	14057	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	0.200000	0.825871	
mm_97602.1	chr11	78949556	78949756	+	1	NA	NA	NA	24365	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.020000	0.522388	
mm_96776.1	chr11	69935895	69936095	+	1	NA	NA	NA	96	NM_016875	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.145000	0.791045	
mm_169631.1	chr15	45140783	45140983	-	1	NA	NA	NA	-25949	NM_026200	67498	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding	0.005000	0.517413	
mm_111110.1	chr12	80958081	80958281	-	1	NA	NA	NA	9898	NM_011387	20493	Mm.486361	NM_011387	ENSMUSG00000021135	Slc10a1	Ntcp	solute carrier family 10 (sodium/bile acid cotransporter family), member 1	protein-coding	0.010000	0.522388	
mm_45072.1	chr5	43867720	43867920	-	1	NA	NA	NA	-989	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.020000	0.437811	
mm_48312.1	chr5	138754795	138754995	-	1	NA	NA	NA	-186	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.145000	0.791045	
mm_84379.1	chr9	65398298	65398498	-	1	NA	NA	NA	-90	NM_001162923	70784	Mm.35827	NM_001033158	ENSMUSG00000041696	Rasl12	4631404I11Rik	RAS-like, family 12	protein-coding	0.030000	0.597015	-33(GCCTTTTAAAAG,-,0.00),-32(CCTTTTAAAAGC,+,0.00),-32(CCTTTTAAAAGC,-,0.00),-31(CTTTTAAAAGCC,+,0.00)
mm_41739.1	chr5	102725078	102725278	+	1	NA	NA	NA	-43632	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.025000	0.412935	
mm_19732.1	chr2	104494425	104494625	-	1	NA	NA	NA	-36	NM_001145824	15259	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.170000	0.830846	
mm_154839.1	chrX	19202790	19202990	+	1	NA	NA	NA	-55919	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.000000	0.358209	
mm_42614.1	chr5	118010062	118010262	+	1	NA	NA	NA	-17662	NM_021344	57816	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	0.015000	0.358209	
mm_168730.1	chr12	113630947	113631147	-	1	NA	NA	NA	87139	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.055000	0.522388	
mm_26266.1	chr3	142501500	142501700	+	1	NA	NA	NA	4666	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.020000	0.492537	
mm_140229.1	chr17	84002201	84002401	+	1	NA	NA	NA	3749	NR_130994	78148	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.045000	0.537313	
mm_94949.1	chr11	29741371	29741571	+	1	NA	NA	NA	22908	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.005000	0.323383	
mm_33257.1	chr4	127168863	127169063	+	1	NA	NA	NA	-241	NM_198618	242667	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	discs, large (Drosophila) homolog-associated protein 3	protein-coding	0.140000	0.761194	
mm_87981.1	chr10	63858752	63858952	+	1	NA	NA	NA	37797	NM_001164519	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.005000	0.348259	
mm_88877.1	chr10	81105825	81106025	+	1	NA	NA	NA	10	NM_001347144	26396	Mm.275436	NM_023138	ENSMUSG00000035027	Map2k2	AA589381|MEK2|MK2|Prkmk2	mitogen-activated protein kinase kinase 2	protein-coding	0.115000	0.676617	
mm_136501.1	chr16	96441567	96441767	-	1	NA	NA	NA	1947	NM_008405	16415	Mm.12872	NM_008405	ENSMUSG00000000157	Itgb2l	5033406G21Rik|pactolus	integrin beta 2-like	protein-coding	0.005000	0.427861	71(GCTTTTAAGTAG,+,0.00)
mm_159695.1	chr5	24479542	24479742	+	1	NA	NA	NA	27465	NM_139153	213990	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.060000	0.661692	
mm_168168.1	chr10	5289433	5289633	-	1	NA	NA	NA	-94826	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.040000	0.567164	
mm_135059.1	chr16	34013342	34013542	-	1	NA	NA	NA	-46439	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.005000	0.388060	
mm_160438.1	chr8	94871038	94871238	-	1	NA	NA	NA	5174	NM_053246	114255	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	0.015000	0.552239	
mm_20268.1	chr2	126675455	126675655	-	1	NA	NA	NA	37	NM_001271469	14391	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.135000	0.726368	
mm_29633.1	chr3	121758450	121758650	-	1	NA	NA	NA	35013	NM_010171	14066	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0.025000	0.472637	-34(GCTTTAAGGCAC,+,0.00)
mm_127319.1	chr15	100280761	100280961	+	1	NA	NA	NA	24	NM_183109	75002	Mm.261400	NM_183109	ENSMUSG00000045631	Tmprss12	4930478A21Rik	transmembrane (C-terminal) protease, serine 12	protein-coding	0.065000	0.661692	
mm_75338.1	chr8	43306248	43306448	-	1	NA	NA	NA	661	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.015000	0.373134	
mm_55881.1	chr6	83526824	83527024	-	1	NA	NA	NA	9327	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.020000	0.497512	
mm_3403.1	chr1	143777239	143777439	+	1	NA	NA	NA	61	NM_019562	56207	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0.105000	0.691542	
mm_131072.1	chr16	4684133	4684333	+	1	NA	NA	NA	163	NM_001135112	83945	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	0.070000	0.686567	
mm_141275.1	chr17	27820414	27820614	-	1	NA	NA	NA	28	NM_001033279	224647	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0.155000	0.810945	
mm_155185.1	chrX	56317549	56317749	+	1	NA	NA	NA	41	NR_038168	72030	Mm.426148	NR_038168	ENSMUSG00000085114	1600025M17Rik	Gm394	RIKEN cDNA 1600025M17 gene	ncRNA	0.030000	0.442786	
mm_57933.1	chr6	134632271	134632471	-	1	NA	NA	NA	117	NM_026345	67729	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	0.085000	0.636816	
mm_104460.1	chr11	95076478	95076678	-	1	NA	NA	NA	136	NM_013565	16400	Mm.57035	NM_013565	ENSMUSG00000001507	Itga3	AA407068|CD49C|GAPB3	integrin alpha 3	protein-coding	0.075000	0.587065	
mm_68314.1	chr7	105787503	105787703	-	1	NA	NA	NA	-53	NM_001162943	233651	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous 1 (Drosophila)	protein-coding	0.155000	0.800995	
mm_139273.1	chr17	48185485	48185685	+	1	NA	NA	NA	-18328	NM_178796	328830	Mm.470939	NM_178796	ENSMUSG00000043939	A530064D06Rik	Trem4|pdctrem	RIKEN cDNA A530064D06 gene	protein-coding	0.010000	0.472637	
mm_119973.1	chr14	55559899	55560099	+	1	NA	NA	NA	-30	NR_037572	28199	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.070000	0.611940	
mm_1594.1	chr1	74375058	74375258	+	1	NA	NA	NA	-45	NM_013612	18173	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.025000	0.547264	
mm_46840.1	chr5	113339967	113340167	-	1	NA	NA	NA	-2422	NR_106089	102466821		NR_106089	ENSMUSG00000104840	Mir7230	mmu-mir-7230	microRNA 7230	ncRNA	0.010000	0.487562	
mm_77278.1	chr8	116677860	116678060	-	1	NA	NA	NA	55031	NM_029441	75796	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.010000	0.442786	
mm_18437.1	chr2	60881179	60881379	-	1	NA	NA	NA	159	NM_001141932	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.155000	0.761194	-30(ACTTTTAGGGCG,+,0.00)
mm_121961.1	chr14	25143150	25143350	-	1	NA	NA	NA	-9	NR_045718	75862	Mm.109191	NR_045718		4930572O13Rik	-	RIKEN cDNA 4930572O13 gene	ncRNA	0.005000	0.363184	
mm_78938.1	chr9	45121105	45121305	+	1	NA	NA	NA	3329	NM_001014761	72821	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	0.010000	0.631841	
mm_140443.1	chr17	88530193	88530393	+	1	NA	NA	NA	169	NM_028658	73825	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0.065000	0.711443	
mm_36698.1	chr4	96663970	96664170	-	1	NA	NA	NA	49	NM_010007	13109	Mm.12838	NM_010007	ENSMUSG00000052520	Cyp2j5	-	cytochrome P450, family 2, subfamily j, polypeptide 5	protein-coding	0.000000	0.487562	
mm_58425.1	chr7	3296713	3296913	+	1	NA	NA	NA	3785	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.050000	0.606965	
mm_57587.1	chr6	127732709	127732909	-	1	NA	NA	NA	36350	NM_201371	381813	Mm.39750	NM_201371	ENSMUSG00000030350	Prmt8	Hrmt1l3|Hrmt1l4	protein arginine N-methyltransferase 8	protein-coding	0.015000	0.582090	
mm_135328.1	chr16	38800182	38800382	-	1	NA	NA	NA	-79	NM_178924	22268	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0.025000	0.597015	47(GGGTAGAAAAGC,-,0.00)
mm_21839.1	chr2	165793276	165793476	-	1	NA	NA	NA	64797	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.005000	0.512438	
mm_69446.1	chr7	133005723	133005923	-	1	NA	NA	NA	9424	NM_001170744	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.010000	0.567164	
mm_116378.1	chr13	41000827	41001027	-	1	NA	NA	NA	-83	NM_026550	68083	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0.045000	0.517413	
mm_84469.1	chr9	66593013	66593213	-	1	NA	NA	NA	2	NM_144937	235441	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.105000	0.726368	
mm_124461.1	chr14	120806209	120806409	-	1	NA	NA	NA	-104885	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	0.030000	0.532338	38(TTTTTTAAAGAC,+,0.00)
mm_41829.1	chr5	104092902	104093102	+	1	NA	NA	NA	-15394	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.015000	0.482587	
mm_15267.1	chr2	155095960	155096160	+	1	NA	NA	NA	4019	NR_040634	100504268	Mm.410858	NR_040634	ENSMUSG00000087254	2310005A03Rik	-	RIKEN cDNA 2310005A03 gene	ncRNA	0.020000	0.462687	
mm_152860.1	chr19	24200562	24200762	-	1	NA	NA	NA	24364	NM_011597	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.045000	0.462687	
mm_92546.1	chr10	79745986	79746186	-	1	NA	NA	NA	495	NM_172551	216151	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	0.010000	0.432836	
mm_107325.1	chr12	31461600	31461800	+	1	NA	NA	NA	23481	NM_021353	13487	Mm.490454	NM_021353	ENSMUSG00000001225	Slc26a3	9030623B18Rik|9130013M11Rik|AV376035|Dra	solute carrier family 26, member 3	protein-coding	0.015000	0.432836	
mm_146317.1	chr18	80555092	80555292	+	1	NA	NA	NA	-10646	NR_028424	100039348	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.035000	0.522388	
mm_25320.1	chr3	106545790	106545990	+	1	NA	NA	NA	-1908	NM_001286986	67171	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0.000000	0.432836	
mm_36552.1	chr4	86749303	86749503	-	1	NA	NA	NA	848	NM_184088	329877	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	0.020000	0.477612	
mm_91862.1	chr10	59441705	59441905	-	1	NA	NA	NA	-26	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.040000	0.537313	
mm_14117.1	chr2	125893239	125893439	+	1	NA	NA	NA	27116	NM_001291002	69976	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	0.015000	0.407960	88(GCTTTAAGGGAA,+,0.00)
mm_43078.1	chr5	124446878	124447078	+	1	NA	NA	NA	274	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.010000	0.537313	-55(TTCCTTAAATGG,-,0.00),-53(CCTTAAATGGAC,+,0.00),-34(TCCTTTAAGGTC,+,0.00)
mm_22217.1	chr2	174327296	174327496	-	1	NA	NA	NA	-372	NM_001310083	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.095000	0.616915	
mm_103364.1	chr11	75071199	75071399	-	1	NA	NA	NA	-5308	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.060000	0.562189	
mm_109769.1	chr12	118847112	118847312	+	1	NA	NA	NA	883	NM_177082	320145	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.090000	0.572139	
mm_165811.1	chr3	145758682	145758882	+	1	NA	NA	NA	90	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.135000	0.756219	
mm_37884.1	chr4	132510367	132510567	-	1	NA	NA	NA	-11	NM_144907	230784	Mm.23608	NM_144907	ENSMUSG00000028893	Sesn2	HI95|SEST2|Ses2	sestrin 2	protein-coding	0.105000	0.701493	
mm_145968.1	chr18	67815394	67815594	+	1	NA	NA	NA	15387	NM_027556	70799	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	0.010000	0.417910	
mm_165067.1	chr19	44407347	44407547	-	1	NA	NA	NA	262	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.065000	0.611940	
mm_34898.1	chr4	155626717	155626917	+	1	NA	NA	NA	1948	NM_007661	12537	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	0.015000	0.422886	
mm_5437.1	chr1	34842842	34843042	-	1	NA	NA	NA	108	NM_001160235	214469	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.195000	0.825871	
mm_77733.1	chr8	126885564	126885764	-	1	NA	NA	NA	60257	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.015000	0.522388	
mm_48815.1	chr5	149015696	149015896	-	1	NA	NA	NA	8834	NR_040429	100503307	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	OTTMUSG00000021225	predicted gene 15408	ncRNA	0.050000	0.517413	
mm_72846.1	chr8	88306516	88306716	+	1	NA	NA	NA	12412	NM_001037724	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.035000	0.601990	
mm_129224.1	chr15	76607481	76607681	-	1	NA	NA	NA	10	NM_053193	94230	Mm.45141	NM_053193	ENSMUSG00000034022	Cpsf1	-	cleavage and polyadenylation specific factor 1	protein-coding	0.140000	0.726368	
mm_119069.1	chr14	30825741	30825941	+	1	NA	NA	NA	247	NM_028839	69179	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	0.135000	0.721393	
mm_16716.1	chr2	7144572	7144772	-	1	NA	NA	NA	-63370	NM_001160292	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.005000	0.432836	
mm_164056.1	chr14	106190905	106191105	+	1	NA	NA	NA	84807	NR_073203	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0.005000	0.348259	
mm_4051.1	chr1	165790085	165790285	+	1	NA	NA	NA	1504	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.005000	0.542289	
mm_27859.1	chr3	79157742	79157942	-	1	NA	NA	NA	-11967	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.005000	0.373134	
mm_28005.1	chr3	83012748	83012948	-	1	NA	NA	NA	5124	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.060000	0.557214	
mm_87391.1	chr10	45107485	45107685	+	1	NA	NA	NA	40371	NM_011156	19072	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.010000	0.492537	
mm_143335.1	chr17	66483771	66483971	-	1	NA	NA	NA	-34121	NM_001114098	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.000000	0.532338	
mm_172848.1	chr9	36568364	36568564	-	1	NA	NA	NA	14171	NM_001167584	100312948	Mm.475849	NM_001167584	ENSMUSG00000091248	Gm17689	Pate-g|Pate8	predicted gene, 17689	protein-coding	0.075000	0.661692	
mm_3195.1	chr1	135810814	135811014	+	1	NA	NA	NA	-7684	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding	0.010000	0.512438	
mm_6876.1	chr1	84363155	84363355	-	1	NA	NA	NA	-78610	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.000000	0.467662	
mm_69516.1	chr7	135195937	135196137	-	1	NA	NA	NA	-35	NR_046050	74314	Mm.415339	NR_046050	ENSMUSG00000100717	1700120G07Rik	-	RIKEN cDNA 1700120G07 gene	ncRNA	0.010000	0.497512	
mm_45825.1	chr5	87694471	87694671	-	1	NA	NA	NA	4854	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.010000	0.482587	
mm_105520.1	chr11	106300238	106300438	-	1	NA	NA	NA	1558	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.030000	0.552239	
mm_172167.1	chr6	44793047	44793247	+	1	NA	NA	NA	-266914	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.070000	0.527363	39(AACTTTAAATGG,-,0.00)
mm_47309.1	chr5	122456893	122457093	-	1	NA	NA	NA	34549	NM_019805	56317	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0.005000	0.328358	13(TTTTTTATACAC,+,0.00)
mm_83434.1	chr9	44999035	44999235	-	1	NA	NA	NA	10455	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.010000	0.378109	31(TTTTTTAAACAC,+,0.00)
mm_69903.1	chr7	141639416	141639616	-	1	NA	NA	NA	15803	NM_001330001	353328	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0.010000	0.477612	
mm_3801.1	chr1	157526009	157526209	+	1	NA	NA	NA	-61	NM_001159986	89867	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	0.025000	0.552239	39(GTCTCTAAGAGG,-,0.00)
mm_30381.1	chr3	152243881	152244081	-	1	NA	NA	NA	22339	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.015000	0.303483	
mm_37260.1	chr4	118437194	118437394	-	1	NA	NA	NA	49	NM_023223	107995	Mm.261764	NM_023223	ENSMUSG00000006398	Cdc20	2310042N09Rik|C87100|p55CDC	cell division cycle 20	protein-coding	0.090000	0.582090	
mm_45010.1	chr5	38502017	38502217	-	1	NA	NA	NA	35	NM_145559	117591	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.020000	0.537313	
mm_94363.1	chr11	5012475	5012675	+	1	NA	NA	NA	25751	NM_007454	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.000000	0.512438	
mm_97744.1	chr11	80472299	80472499	+	1	NA	NA	NA	-4647	NM_009871	12569	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0.020000	0.522388	
mm_119387.1	chr14	41136583	41136783	+	1	NA	NA	NA	4895	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.000000	0.363184	
mm_45936.1	chr5	89883389	89883589	-	1	NA	NA	NA	-155	NM_001081401	330119	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	0.140000	0.786070	
mm_109517.1	chr12	111454317	111454517	+	1	NA	NA	NA	11756	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.000000	0.482587	
mm_32518.1	chr4	108643046	108643246	+	1	NA	NA	NA	23190	NM_177045	319965	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	0.020000	0.462687	
mm_27104.1	chr3	30599775	30599975	-	1	NA	NA	NA	-5	NM_029690	76652	Mm.116928	NM_029690	ENSMUSG00000037737	Actrt3	1700119I24Rik|ARP-T3|Arpm1	actin related protein T3	protein-coding	0.070000	0.646766	
mm_72025.1	chr8	70755859	70756059	+	1	NA	NA	NA	1280	NM_001166399	19339	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0.050000	0.522388	
mm_129743.1	chr15	82224272	82224472	-	1	NA	NA	NA	-36	NM_028075	72049	Mm.240047	NM_028075	ENSMUSG00000068105	Tnfrsf13c	2010006P15Rik|BAFF-R|Baffr|Bcmd|Bcmd-1|Bcmd1|Lvis22	tumor necrosis factor receptor superfamily, member 13c	protein-coding	0.070000	0.661692	
mm_77019.1	chr8	108584257	108584457	-	1	NA	NA	NA	320	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.020000	0.497512	
mm_105362.1	chr11	103132786	103132986	-	1	NA	NA	NA	-453	NM_001130516	71059	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0.095000	0.671642	
mm_83938.1	chr9	56637251	56637451	-	1	NA	NA	NA	-1703	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.025000	0.547264	
mm_94553.1	chr11	11484461	11484661	+	1	NA	NA	NA	-4705	NM_028669	73862	Mm.159077	NM_028669	ENSMUSG00000020191	4930415F15Rik	-	RIKEN cDNA 4930415F15 gene	protein-coding	0.020000	0.507463	
mm_94665.1	chr11	17211802	17212002	+	1	NA	NA	NA	9	NM_178909	103784	Mm.298132	NM_178909	ENSMUSG00000078970	Wdr92	AI553587|HZGJ	WD repeat domain 92	protein-coding	0.035000	0.517413	
mm_27024.1	chr3	26098622	26098822	-	1	NA	NA	NA	54585	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.010000	0.398010	
mm_155738.1	chrX	96166458	96166658	+	1	NA	NA	NA	70513	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.035000	0.547264	
mm_84602.1	chr9	70090155	70090355	-	1	NA	NA	NA	51302	NM_029784	76886	Mm.44355	NM_029784	ENSMUSG00000032224	Fam81a	6430514L14Rik	family with sequence similarity 81, member A	protein-coding	0.000000	0.253731	
mm_28326.1	chr3	89349849	89350049	-	1	NA	NA	NA	79	NM_001037722	11490	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	0.100000	0.771144	
mm_77213.1	chr8	114131487	114131687	-	1	NA	NA	NA	-1987	NM_024446	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	0.020000	0.487562	
mm_69048.1	chr7	126857229	126857429	-	1	NA	NA	NA	4134	NM_153580	233875	Mm.486253	NM_153580	ENSMUSG00000030689	Ino80e	AI225782|AI854876|Ccdc85|Ccdc95	INO80 complex subunit E	protein-coding	0.015000	0.582090	
mm_118630.1	chr14	21271428	21271628	+	1	NA	NA	NA	195376	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.010000	0.402985	
mm_35155.1	chr4	12171665	12171865	-	1	NA	NA	NA	250	NM_001310743	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.140000	0.751244	
mm_107803.1	chr12	64965701	64965901	+	1	NA	NA	NA	59	NM_177805	328108	Mm.138465	NM_177805	ENSMUSG00000035614	Fam179b	A430041B07Rik|BC062107|C130034K06|mKIAA0423	family with sequence similarity 179, member B	protein-coding	0.075000	0.681592	
mm_13936.1	chr2	121140416	121140616	+	1	NA	NA	NA	88	NM_001290812	75894	Mm.384805	NM_029475	ENSMUSG00000027259	Adal	4930578F03Rik	adenosine deaminase-like	protein-coding	0.160000	0.706468	
mm_125021.1	chr15	25708166	25708366	+	1	NA	NA	NA	85716	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.005000	0.378109	
mm_6492.1	chr1	74181523	74181723	-	1	NA	NA	NA	13008	NM_178241	227288	Mm.337035	NM_178241	ENSMUSG00000048480	Cxcr1	Il8ra	chemokine (C-X-C motif) receptor 1	protein-coding	0.005000	0.542289	
mm_164177.1	chr15	76210618	76210818	+	1	NA	NA	NA	-1553	NM_201386	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.025000	0.487562	
mm_81672.1	chr9	111032887	111033087	+	1	NA	NA	NA	13695	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.005000	0.427861	
mm_72147.1	chr8	72144441	72144641	+	1	NA	NA	NA	9249	NM_001001491	326618	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	0.010000	0.472637	
mm_67306.1	chr7	79386818	79387018	-	1	NA	NA	NA	109	NM_020599	19771	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	0.020000	0.597015	
mm_142010.1	chr17	35200272	35200472	-	1	NA	NA	NA	1635	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.030000	0.582090	
mm_3103.1	chr1	134455444	134455644	+	1	NA	NA	NA	13	NM_001311136	240756	Mm.87398	NM_153128	ENSMUSG00000026455	Klhl12	C3ip1	kelch-like 12	protein-coding	0.125000	0.711443	
mm_52105.1	chr6	97876455	97876655	+	1	NA	NA	NA	-53262	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.432836	
mm_150878.1	chr19	45076093	45076293	+	1	NA	NA	NA	54	NM_178929	107250	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.035000	0.517413	
mm_53610.1	chr6	139599389	139599589	+	1	NA	NA	NA	-97580	NM_001128090	632971	Mm.475610	NM_001128090	ENSMUSG00000092164	Rergl	EG632971	RERG/RAS-like	protein-coding	0.005000	0.417910	
mm_110502.1	chr12	54369230	54369430	-	1	NA	NA	NA	21988	NR_033689	665239	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.020000	0.492537	
mm_122352.1	chr14	38833351	38833551	-	1	NA	NA	NA	-64851	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA	0.005000	0.422886	
mm_81645.1	chr9	110951636	110951836	+	1	NA	NA	NA	191	NM_028838	74249	Mm.307615	NM_028838	ENSMUSG00000032495	Lrrc2	2400002D05Rik|4933431K03Rik	leucine rich repeat containing 2	protein-coding	0.020000	0.507463	
mm_51748.1	chr6	87379269	87379469	+	1	NA	NA	NA	6004	NM_025467	66284	Mm.46446	NM_025467	ENSMUSG00000030049	Gkn2	1810036H07Rik|Bricd1b	gastrokine 2	protein-coding	0.005000	0.318408	-72(CCTTTAAGATGG,+,0.00)
mm_146274.1	chr18	77882156	77882356	+	1	NA	NA	NA	-56211	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.020000	0.517413	
mm_139054.1	chr17	46383455	46383655	+	1	NA	NA	NA	-211	NM_207671	57908	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	0.125000	0.751244	
mm_146622.1	chr18	10125504	10125704	-	1	NA	NA	NA	56188	NM_009071	19877	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.015000	0.313433	-7(TTTTTTAAAGCA,+,0.00)
mm_44420.1	chr5	18799525	18799725	-	1	NA	NA	NA	426930	NR_102341	70832	Mm.398993	NR_102341	ENSMUSG00000097626	4921504A21Rik	-	RIKEN cDNA 4921504A21 gene	ncRNA	0.010000	0.497512	-45(TTCTTTATAAGC,-,0.00)
mm_9430.1	chr1	172500599	172500799	-	1	NA	NA	NA	453	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.080000	0.631841	
mm_116563.1	chr13	46929716	46929916	-	1	NA	NA	NA	-98	NM_010617	16553	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	0.205000	0.865672	
mm_169113.1	chr13	48924364	48924564	+	1	NA	NA	NA	43364	NM_001033268	218236	Mm.426571	NM_001033268	ENSMUSG00000038014	Fam120a	C9orf10|Ossa	family with sequence similarity 120, member A	protein-coding	0.015000	0.467662	
mm_38745.1	chr4	145270078	145270278	-	1	NA	NA	NA	-23308	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.000000	0.542289	
mm_156999.1	chrX	7567540	7567740	-	1	NA	NA	NA	-5960	NR_029473	78185	Mm.160055	NR_029473	ENSMUSG00000039545	Ppp1r3fos	4930524L23Rik	protein phosphatase 1, regulatory subunit 3F, opposite strand	ncRNA	0.030000	0.517413	
mm_60136.1	chr7	37772757	37772957	+	1	NA	NA	NA	-3105	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.065000	0.567164	
mm_125092.1	chr15	27488181	27488381	+	1	NA	NA	NA	21604	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.035000	0.592040	
mm_56751.1	chr6	115994831	115995031	-	1	NA	NA	NA	74	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.155000	0.840796	
mm_166728.1	chr6	122487075	122487275	-	1	NA	NA	NA	-870	NM_027664	108653	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	0.035000	0.472637	
mm_108027.1	chr12	73716079	73716279	+	1	NA	NA	NA	131383	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.045000	0.502488	9(GGCTCTTAATAG,-,0.00)
mm_57966.1	chr6	135310260	135310460	-	1	NA	NA	NA	24	NM_029595	76400	Mm.293018	NM_029595	ENSMUSG00000047104	Pbp2	1700023A18Rik|AI326308|Pebp-2|Pebp2	phosphatidylethanolamine binding protein 2	protein-coding	0.055000	0.601990	
mm_159990.1	chr6	116056789	116056989	-	1	NA	NA	NA	-61884	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.020000	0.522388	
mm_118567.1	chr14	18271215	18271415	+	1	NA	NA	NA	179	NM_023526	69721	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	0.110000	0.656716	
mm_139844.1	chr17	69289623	69289823	+	1	NA	NA	NA	-12517	NR_045428	69750	Mm.439063	NR_045428	ENSMUSG00000100572	2410021H03Rik	-	RIKEN cDNA 2410021H03 gene	ncRNA	0.000000	0.253731	
mm_30392.1	chr3	152247986	152248186	-	1	NA	NA	NA	18234	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.020000	0.343284	
mm_52353.1	chr6	112459551	112459751	+	1	NA	NA	NA	146	NM_007617	12391	Mm.3924	NM_007617	ENSMUSG00000062694	Cav3	AI385751|Cav-3|M-cav	caveolin 3	protein-coding	0.030000	0.577114	-84(CCCCCTTTAAGG,-,0.00),-82(CCCTTTAAGGAG,+,0.00),-81(CCTTTAAGGAGC,+,0.00)
mm_26825.1	chr3	10345937	10346137	-	1	NA	NA	NA	5280	NM_001331015	66361	Mm.371617	NM_025512	ENSMUSG00000039795	Zfand1	2310008M20Rik|AW048890	zinc finger, AN1-type domain 1	protein-coding	0.030000	0.472637	
mm_131309.1	chr16	11461809	11462009	+	1	NA	NA	NA	56261	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.030000	0.482587	
mm_55751.1	chr6	78373137	78373337	-	1	NA	NA	NA	2352	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.010000	0.388060	
mm_36009.1	chr4	56802228	56802428	-	1	NA	NA	NA	-1	NM_001081420	230234	Mm.268148	NM_001081420	ENSMUSG00000038827	Fam206a	simiate	family with sequence similarity 206, member A	protein-coding	0.105000	0.681592	
mm_90861.1	chr10	8885777	8885977	-	1	NA	NA	NA	193	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.175000	0.805970	
mm_81255.1	chr9	107992357	107992557	+	1	NA	NA	NA	-6541	NM_026597	68176	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0.005000	0.532338	
mm_4670.1	chr1	180387657	180387857	+	1	NA	NA	NA	-57208	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.025000	0.582090	
mm_79376.1	chr9	54699422	54699622	+	1	NA	NA	NA	-37	NM_021422	58233	Mm.489676	NM_021422	ENSMUSG00000032285	Dnaja4	1110021L12Rik|AV358213|Dj4|Hsj4|mmDjA4	DnaJ heat shock protein family (Hsp40) member A4	protein-coding	0.165000	0.751244	
mm_120503.1	chr14	66223853	66224053	+	1	NA	NA	NA	-10401	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.005000	0.567164	
mm_28316.1	chr3	89279489	89279689	-	1	NA	NA	NA	56	NM_010107	13636	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0.065000	0.636816	
mm_89445.1	chr10	93084121	93084321	+	1	NA	NA	NA	-2625	NM_001347060	380654	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	0.025000	0.532338	
mm_125668.1	chr15	65810123	65810323	+	1	NA	NA	NA	23182	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0.030000	0.497512	
mm_65862.1	chr7	29354222	29354422	-	1	NA	NA	NA	50317	NM_013874	29861	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.030000	0.606965	
mm_143645.1	chr17	79354961	79355161	-	1	NA	NA	NA	30	NM_026514	260409	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	0.145000	0.786070	
mm_167133.1	chr7	126976489	126976689	+	1	NA	NA	NA	675	NM_001347656	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.070000	0.706468	
mm_15466.1	chr2	157457774	157457974	+	1	NA	NA	NA	33581	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.020000	0.552239	
mm_3450.1	chr1	150102957	150103157	+	1	NA	NA	NA	3026	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.383085	
mm_87999.1	chr10	66997102	66997302	+	1	NA	NA	NA	-7873	NR_110511	102634101	Mm.445258	NR_110511		Gm31763	-	predicted gene, 31763	ncRNA	0.005000	0.393035	
mm_17813.1	chr2	33718653	33718853	-	1	NA	NA	NA	77560	NR_046275	100504399	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	0.025000	0.527363	
mm_136959.1	chr17	15499834	15500034	+	1	NA	NA	NA	46	NM_013684	21374	Mm.244820	NM_013684	ENSMUSG00000014767	Tbp	GTF2D1|Gtf2d|SCA17|TFIID	TATA box binding protein	protein-coding	0.090000	0.582090	
mm_44559.1	chr5	24603018	24603218	-	1	NA	NA	NA	-1116	NM_025891	66993	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.030000	0.567164	
mm_63414.1	chr7	127448582	127448782	+	1	NA	NA	NA	476	NM_175163	71131	Mm.474533	NM_175163	ENSMUSG00000048921	Zfp689	4933416E05Rik|Znf689	zinc finger protein 689	protein-coding	0.080000	0.656716	
mm_157620.1	chrX	56549521	56549721	-	1	NA	NA	NA	-15	NM_001033372	270599	Mm.424438	NM_001033372	ENSMUSG00000064016	Gm648	-	predicted gene 648	protein-coding	0.020000	0.537313	
mm_75974.1	chr8	72136640	72136840	-	1	NA	NA	NA	1448	NM_001001491	326618	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	0.015000	0.442786	
mm_118500.1	chr14	13454114	13454314	+	1	NA	NA	NA	256	NM_001163032	72003	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.000000	0.422886	
mm_93322.1	chr10	99132281	99132481	-	1	NA	NA	NA	24246	NM_015737	14426	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.015000	0.557214	
mm_2615.1	chr1	120485797	120485997	+	1	NA	NA	NA	19187	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.005000	0.542289	
mm_44763.1	chr5	31596628	31596828	-	1	NA	NA	NA	-17223	NM_025796	66845	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0.030000	0.587065	
mm_61321.1	chr7	68189475	68189675	+	1	NA	NA	NA	74658	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.015000	0.472637	
mm_99110.1	chr11	100135299	100135499	+	1	NA	NA	NA	550	NM_008469	16665	Mm.440010	NM_008469	ENSMUSG00000054146	Krt15	AI528832|K15|Krt1-15	keratin 15	protein-coding	0.020000	0.492537	
mm_1994.1	chr1	87126628	87126828	+	1	NA	NA	NA	1720	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.020000	0.477612	
mm_113908.1	chr13	49341437	49341637	+	1	NA	NA	NA	-12	NM_001039179	76895	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	bicaudal D homolog 2 (Drosophila)	protein-coding	0.105000	0.706468	
mm_80235.1	chr9	72679161	72679361	+	1	NA	NA	NA	16914	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.005000	0.363184	
mm_96721.1	chr11	69665677	69665877	+	1	NA	NA	NA	393	NM_001291058	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.020000	0.552239	
mm_88505.1	chr10	77864525	77864725	+	1	NA	NA	NA	2650	NM_001101631	100041351	Mm.441672	NM_001101631		Gm3285	-	predicted gene 3285	protein-coding	0.020000	0.592040	
mm_114556.1	chr13	74122426	74122626	+	1	NA	NA	NA	1011	NM_001081060	105243	Mm.261564	NM_001081060	ENSMUSG00000036123	Slc9a3	9030624O13Rik|AI930210|NHE-3|NHE3	solute carrier family 9 (sodium/hydrogen exchanger), member 3	protein-coding	0.010000	0.398010	
mm_141112.1	chr17	26081516	26081716	-	1	NA	NA	NA	8548	NM_011933	26378	Mm.292869	NM_011933	ENSMUSG00000036775	Decr2	-	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	protein-coding	0.015000	0.437811	
mm_125943.1	chr15	76248188	76248388	+	1	NA	NA	NA	97	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.005000	0.567164	
mm_95535.1	chr11	52256167	52256367	+	1	NA	NA	NA	24272	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.015000	0.512438	
mm_89114.1	chr10	84708085	84708285	+	1	NA	NA	NA	-47863	NM_001024918	71137	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.035000	0.477612	
mm_143384.1	chr17	67966974	67967174	-	1	NA	NA	NA	-16134	NM_001347410	268970	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0.015000	0.422886	
mm_54828.1	chr6	42585718	42585918	-	1	NA	NA	NA	11554	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.000000	0.388060	
mm_11596.1	chr2	33468001	33468201	+	1	NA	NA	NA	431	NM_027947	71834	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	0.065000	0.567164	
mm_155716.1	chrX	96099362	96099562	+	1	NA	NA	NA	3417	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.000000	0.407960	
mm_54377.1	chr6	31205849	31206049	-	1	NA	NA	NA	12525	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.010000	0.432836	
mm_77682.1	chr8	125699382	125699582	-	1	NA	NA	NA	29664	NM_028908	74393	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0.005000	0.437811	-32(CTATATAAAAAG,-,0.00)
mm_147312.1	chr18	41951071	41951271	-	1	NA	NA	NA	23	NM_029942	77619	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	0.055000	0.592040	
mm_10519.1	chr2	16360915	16361115	+	1	NA	NA	NA	4711	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.000000	0.467662	
mm_14170.1	chr2	126675222	126675422	+	1	NA	NA	NA	270	NM_001271469	14391	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.090000	0.606965	
mm_24902.1	chr3	96184646	96184846	+	1	NA	NA	NA	3519	NM_022030	64051	Mm.491135	NM_022030	ENSMUSG00000038486	Sv2a	AI746429|mKIAA0736	synaptic vesicle glycoprotein 2 a	protein-coding	0.000000	0.547264	
mm_60965.1	chr7	47747232	47747432	+	1	NA	NA	NA	-145960	NM_153067	233222	Mm.240142	NM_153067	ENSMUSG00000078698	Mrgpra3	Mrga3	MAS-related GPR, member A3	protein-coding	0.000000	0.457711	
mm_93827.1	chr10	121553852	121554052	-	1	NA	NA	NA	32842	NM_019786	56480	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.025000	0.557214	
mm_159052.1	chr1	189344083	189344283	-	1	NA	NA	NA	9	NM_001281847	16526	Mm.33304	NM_010607	ENSMUSG00000037624	Kcnk2	A430027H14Rik|AI848635|TREK-1	potassium channel, subfamily K, member 2	protein-coding	0.015000	0.572139	
mm_127882.1	chr15	8642187	8642387	-	1	NA	NA	NA	68520	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.025000	0.512438	
mm_109851.1	chr12	4712137	4712337	-	1	NA	NA	NA	26146	NM_029107	74855	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	0.005000	0.497512	
mm_124893.1	chr15	10346388	10346588	+	1	NA	NA	NA	-12045	NM_001310736	268782	Mm.482244	NM_001031851	ENSMUSG00000089678	Agxt2	AI303810|AI663818	alanine-glyoxylate aminotransferase 2	protein-coding	0.020000	0.477612	
mm_2204.1	chr1	89580136	89580336	+	1	NA	NA	NA	103656	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.190000	0.815920	
mm_164300.1	chr15	103897265	103897465	-	1	NA	NA	NA	1935	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.030000	0.383085	
mm_148518.1	chr19	4236921	4237121	+	1	NA	NA	NA	4606	NR_132280	69745	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0.005000	0.373134	
mm_26973.1	chr3	24858131	24858331	-	1	NA	NA	NA	-74225	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.030000	0.497512	
mm_77210.1	chr8	114014314	114014514	-	1	NA	NA	NA	-119160	NM_024446	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	0.015000	0.457711	
mm_122046.1	chr14	30056232	30056432	-	1	NA	NA	NA	33699	NM_175343	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.030000	0.562189	
mm_145773.1	chr18	65025894	65026094	+	1	NA	NA	NA	2467	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.020000	0.592040	
mm_157956.1	chrX	87779598	87779798	-	1	NA	NA	NA	335925	NM_001160403	331461	Mm.121680	NM_001160403	ENSMUSG00000052372	Il1rapl1	6330532G10Rik|C030039N24|IL1R8|IL1RAPL|MRX34|OPHN4|TIGIRR-2	interleukin 1 receptor accessory protein-like 1	protein-coding	0.000000	0.253731	-80(CTCCATAAATAG,-,0.00),-78(CCATAAATAGCC,+,0.00)
mm_9311.1	chr1	171641077	171641277	-	1	NA	NA	NA	723	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.020000	0.417910	
mm_117220.1	chr13	64129227	64129427	-	1	NA	NA	NA	3	NM_001001321	70484	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	0.110000	0.736318	
mm_144823.1	chr18	36342999	36343199	+	1	NA	NA	NA	-5525	NM_001081365	66060	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.010000	0.507463	
mm_134109.1	chr16	9995472	9995672	-	1	NA	NA	NA	-3039	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.105000	0.661692	
mm_170962.1	chr2	57553048	57553248	+	1	NA	NA	NA	314766	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.045000	0.552239	
mm_60546.1	chr7	44480592	44480792	+	1	NA	NA	NA	-3825	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.452736	
mm_164984.1	chr19	10101163	10101363	-	1	NA	NA	NA	240	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	0.070000	0.616915	
mm_162214.1	chrX	136742793	136742993	-	1	NA	NA	NA	25	NM_001168227	56397	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	0.015000	0.462687	
mm_172265.1	chr6	75298035	75298235	-	1	NA	NA	NA	-1827114	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.035000	0.462687	
mm_143668.1	chr17	79895862	79896062	-	1	NA	NA	NA	161	NM_178050	56298	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.115000	0.671642	
mm_36800.1	chr4	103173259	103173459	-	1	NA	NA	NA	41525	NM_177732	242585	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.000000	0.383085	
mm_14590.1	chr2	136057791	136057991	+	1	NA	NA	NA	-36	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.015000	0.452736	
mm_108687.1	chr12	86867620	86867820	+	1	NA	NA	NA	17094	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.020000	0.572139	
mm_40375.1	chr5	52363840	52364040	+	1	NA	NA	NA	136	NM_011435	20657	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	0.015000	0.611940	
mm_50225.1	chr6	42350528	42350728	+	1	NA	NA	NA	800	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.025000	0.616915	
mm_63978.1	chr7	139975651	139975851	+	1	NA	NA	NA	3004	NM_001347614	381933	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0.005000	0.527363	
mm_173033.1	chrX	105888943	105889143	-	1	NA	NA	NA	40329	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.000000	0.343284	
mm_106689.1	chr12	3365075	3365275	+	1	NA	NA	NA	43	NM_008445	16570	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.095000	0.706468	
mm_32307.1	chr4	103164543	103164743	+	1	NA	NA	NA	45253	NM_001039081	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.000000	0.407960	
mm_105099.1	chr11	100939461	100939661	-	1	NA	NA	NA	-21	NM_011486	20848	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.055000	0.611940	
mm_157102.1	chrX	9437557	9437757	-	1	NA	NA	NA	31667	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.348259	-66(CTTTTTAAATAG,+,0.00)
mm_95641.1	chr11	53719919	53720119	+	1	NA	NA	NA	-775	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.005000	0.383085	
mm_136914.1	chr17	13017107	13017307	+	1	NA	NA	NA	9368	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.005000	0.398010	-97(CTTTTTATACAA,+,0.00)
mm_1885.1	chr1	85670816	85671016	+	1	NA	NA	NA	20928	NM_001313714	20684	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.005000	0.383085	
mm_68529.1	chr7	113207002	113207202	-	1	NA	NA	NA	-363	NM_001243048	11865	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0.065000	0.641791	
mm_47590.1	chr5	124862039	124862239	-	1	NA	NA	NA	82	NM_144819	215707	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.160000	0.771144	
mm_164193.1	chr15	78877369	78877569	-	1	NA	NA	NA	279	NM_145929	106039	Mm.251331	NM_145929	ENSMUSG00000033128	Gga1	4930406E12Rik|AU016030|AW209092	golgi associated, gamma adaptin ear containing, ARF binding protein 1	protein-coding	0.170000	0.800995	
mm_166469.1	chr5	142794592	142794792	-	1	NA	NA	NA	22695	NM_178242	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.040000	0.611940	
mm_88825.1	chr10	80803979	80804179	+	1	NA	NA	NA	-1169	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.020000	0.676617	
mm_29297.1	chr3	107895680	107895880	-	1	NA	NA	NA	-74	NM_010360	14866	Mm.282351	NM_010360	ENSMUSG00000004032	Gstm5	-	glutathione S-transferase, mu 5	protein-coding	0.075000	0.636816	
mm_98497.1	chr11	94951629	94951829	+	1	NA	NA	NA	15505	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.010000	0.417910	
mm_26918.1	chr3	20242080	20242280	-	1	NA	NA	NA	1	NM_007753	12873	Mm.1135	NM_007753	ENSMUSG00000001865	Cpa3	MC-CPA	carboxypeptidase A3, mast cell	protein-coding	0.015000	0.432836	
mm_61506.1	chr7	78718289	78718489	+	1	NA	NA	NA	-169	NR_015542	414121	Mm.482537	NR_015542	ENSMUSG00000059146	E430016F16Rik	-	RIKEN cDNA E430016F16 gene	ncRNA	0.015000	0.482587	-42(TACTATATAAGG,-,0.00),-22(GGGTTTTTAAAC,-,0.00),-20(GTTTTTAAACCA,+,0.00)
mm_133731.1	chr16	93809335	93809535	+	1	NA	NA	NA	-22686	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.020000	0.507463	
mm_15916.1	chr2	165064834	165065034	+	1	NA	NA	NA	9298	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.010000	0.442786	
mm_140886.1	chr17	23893510	23893710	-	1	NA	NA	NA	-5112	NM_001039238	630537	Mm.436677	NM_001039238	ENSMUSG00000096278	Dcpp2	Dcpp-2|EG630537|SPT-2	demilune cell and parotid protein 2	protein-coding	0.015000	0.437811	-24(CTTTATAAAAAG,-,0.00)
mm_149351.1	chr19	10895278	10895478	+	1	NA	NA	NA	147	NM_001253843	28000	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	0.110000	0.691542	
mm_128255.1	chr15	36771036	36771236	-	1	NA	NA	NA	19796	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.015000	0.537313	82(TGCCCTAAATGG,-,0.00),84(CCCTAAATGGTC,+,0.00)
mm_69740.1	chr7	140950147	140950347	-	1	NA	NA	NA	-8	NM_053088	73835	Mm.389989	NM_053088	ENSMUSG00000025489	Ifitm5	1110003J06Rik|AW213665|Bril|DSPA1|Hrmp1|Hrtm1	interferon induced transmembrane protein 5	protein-coding	0.030000	0.567164	
mm_142191.1	chr17	36951044	36951244	-	1	NA	NA	NA	648	NM_029632	76497	Mm.46176	NM_029632	ENSMUSG00000036398	Ppp1r11	1500041B02Rik|AV117883|Hcgv|Tcte5|Tctex-5|Tctex5	protein phosphatase 1, regulatory (inhibitor) subunit 11	protein-coding	0.030000	0.427861	
mm_9617.1	chr1	176275196	176275396	-	1	NA	NA	NA	16	NM_176916	319455	Mm.338001	NM_176916	ENSMUSG00000055214	Pld5	B230365F16Rik	phospholipase D family, member 5	protein-coding	0.115000	0.761194	
mm_102634.1	chr11	62539185	62539385	-	1	NA	NA	NA	-24	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.130000	0.736318	
mm_108230.1	chr12	77238916	77239116	+	1	NA	NA	NA	277	NR_045554	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.140000	0.731343	
mm_22697.1	chr3	18008645	18008845	+	1	NA	NA	NA	-45580	NM_021560	59058	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0.035000	0.417910	
mm_162049.1	chrX	6172879	6173079	-	1	NA	NA	NA	12	NM_001031664	102954	Mm.426101	NM_001031664	ENSMUSG00000073293	Nudt10	AI853080|Dipp3a	nudix (nucleoside diphosphate linked moiety X)-type motif 10	protein-coding	0.135000	0.776119	
mm_108148.1	chr12	76294060	76294260	+	1	NA	NA	NA	-30731	NM_001101471	238276	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.025000	0.522388	
mm_107757.1	chr12	59071426	59071626	+	1	NA	NA	NA	4607	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.025000	0.432836	
mm_145854.1	chr18	65454007	65454207	+	1	NA	NA	NA	23110	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.015000	0.462687	
mm_103779.1	chr11	82764157	82764357	-	1	NA	NA	NA	64	NM_009839	12467	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0.075000	0.601990	
mm_173266.1	chrX	95444760	95444960	-	1	NA	NA	NA	-20	NM_175179	72345	Mm.182867	NM_175179	ENSMUSG00000050332	Amer1	2810002O09Rik|AW492303|Fam123b|Wtx	APC membrane recruitment 1	protein-coding	0.045000	0.577114	
mm_103951.1	chr11	84068479	84068679	-	1	NA	NA	NA	-222	NM_019819	56405	Mm.240885	NM_019819	ENSMUSG00000018648	Dusp14	1110014C10Rik|2310042C07Rik|D11Ertd395e|MKP-L|Mkp6	dual specificity phosphatase 14	protein-coding	0.060000	0.611940	
mm_28080.1	chr3	84582399	84582599	-	1	NA	NA	NA	126	NM_001081093	99889	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	0.110000	0.706468	
mm_49603.1	chr6	30741276	30741476	+	1	NA	NA	NA	77	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.030000	0.373134	
mm_79930.1	chr9	65637746	65637946	+	1	NA	NA	NA	7264	NM_028030	71973	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	0.010000	0.492537	
mm_65815.1	chr7	29125051	29125251	-	1	NA	NA	NA	0	NM_009109	20190	Mm.439745	NM_009109	ENSMUSG00000030592	Ryr1	AI528790|RYR-1|Ryr|skrr	ryanodine receptor 1, skeletal muscle	protein-coding	0.050000	0.651741	
mm_150140.1	chr19	31082914	31083114	+	1	NA	NA	NA	173	NM_031249	83410	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	0.075000	0.542289	
mm_49113.1	chr6	8509312	8509512	+	1	NA	NA	NA	-188	NM_133236	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.150000	0.731343	
mm_171478.1	chr4	145864074	145864274	+	1	NA	NA	NA	26955	NR_033612	236069	Mm.276881	NR_033612	ENSMUSG00000096233	Gm13238	OTTMUSG00000011065	carnitine deficiency-associated gene expressed in ventricle 3 pseudogene	pseudo	0.025000	0.552239	
mm_108085.1	chr12	73997683	73997883	+	1	NA	NA	NA	22	NM_172804	238266	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	6430703N11|Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding	0.190000	0.805970	
mm_157422.1	chrX	38564252	38564452	-	1	NA	NA	NA	11844	NM_028288	72584	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	0.035000	0.616915	
mm_101004.1	chr11	8468720	8468920	-	1	NA	NA	NA	195715	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.045000	0.601990	
mm_72144.1	chr8	72135696	72135896	+	1	NA	NA	NA	504	NM_001001491	326618	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	0.100000	0.671642	
mm_4837.1	chr1	186704918	186705118	+	1	NA	NA	NA	971	NM_009367	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.030000	0.437811	-75(TCCTTTAAAAAA,-,0.00),-74(CCTTTAAAAAAG,+,0.00)
mm_29463.1	chr3	113574666	113574866	-	1	NA	NA	NA	-4	NM_007446	11722	Mm.439727	NM_007446	ENSMUSG00000074264	Amy1	Amy-1|Amy1a|C030014B17Rik	amylase 1, salivary	protein-coding	0.000000	0.447761	
mm_61790.1	chr7	83883769	83883969	+	1	NA	NA	NA	472	NM_030705	80889	Mm.272998	NM_030705	ENSMUSG00000070462	Mesdc1	AW061151	mesoderm development candidate 1	protein-coding	0.150000	0.796020	-70(GCTCTTAGGGCG,+,0.00)
mm_123735.1	chr14	70176706	70176906	-	1	NA	NA	NA	9	NM_001253736	213019	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0.095000	0.726368	
mm_26705.1	chr3	157946874	157947074	+	1	NA	NA	NA	-492	NM_001013806	433667	Mm.265806	NM_001013806	ENSMUSG00000039988	Ankrd13c	AI505652|AU022220	ankyrin repeat domain 13c	protein-coding	0.055000	0.537313	
mm_72358.1	chr8	79712858	79713058	+	1	NA	NA	NA	1138	NM_026904	68999	Mm.257445	NM_026904	ENSMUSG00000036977	Anapc10	1500026N15Rik|A830003M23Rik|APC10	anaphase promoting complex subunit 10	protein-coding	0.010000	0.497512	
mm_57489.1	chr6	125275842	125276042	-	1	NA	NA	NA	10100	NM_009446	22144	Mm.287784	NM_009446	ENSMUSG00000067702	Tuba3a	AI528779|M[a]3|Tuba3	tubulin, alpha 3A	protein-coding	0.025000	0.542289	
mm_154728.1	chrX	9436776	9436976	+	1	NA	NA	NA	32448	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.388060	
mm_11977.1	chr2	55115670	55115870	+	1	NA	NA	NA	-320200	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.005000	0.353234	58(TCCTTTTAAAGG,-,0.00),59(CCTTTTAAAGGC,+,0.00),60(CTTTTAAAGGCA,+,0.00)
mm_31852.1	chr4	75549620	75549820	+	1	NA	NA	NA	-271434	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.005000	0.398010	61(GTCTCTTAAAGG,-,0.00)
mm_47423.1	chr5	123150081	123150281	-	1	NA	NA	NA	7988	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.020000	0.572139	
mm_56285.1	chr6	91440793	91440993	-	1	NA	NA	NA	-39	NR_045980	75787	Mm.30842	NR_045980	ENSMUSG00000097693	4930471M09Rik	4930427C17Rik	RIKEN cDNA 4930471M09 gene	ncRNA	0.075000	0.577114	
mm_122029.1	chr14	29529552	29529752	-	1	NA	NA	NA	192212	NM_009785	12294	Mm.386754	NM_009785	ENSMUSG00000021991	Cacna2d3	Cacnad3|alapha2delta3	calcium channel, voltage-dependent, alpha2/delta subunit 3	protein-coding	0.005000	0.497512	-9(TCATCTAAAAGC,-,0.00)
mm_29315.1	chr3	108012466	108012666	-	1	NA	NA	NA	5407	NM_010358	14862	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	0.005000	0.592040	
mm_131094.1	chr16	4908611	4908811	+	1	NA	NA	NA	22611	NM_001252437	17237	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.000000	0.407960	
mm_148949.1	chr19	7268205	7268405	+	1	NA	NA	NA	26	NM_001320554	104383	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.165000	0.781095	
mm_150682.1	chr19	42057907	42058107	+	1	NA	NA	NA	5779	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	0.010000	0.467662	
mm_96559.1	chr11	68968041	68968241	+	1	NA	NA	NA	10	NM_028048	71998	Mm.298622	NM_028048	ENSMUSG00000018740	Slc25a35	1810012H11Rik	solute carrier family 25, member 35	protein-coding	0.070000	0.621891	
mm_44901.1	chr5	35525598	35525798	-	1	NA	NA	NA	-72	NM_153107	242939	Mm.108557	NM_153107	ENSMUSG00000036596	Cpz	AV136066	carboxypeptidase Z	protein-coding	0.040000	0.621891	-98(TCCCATAAGAGG,-,0.00)
mm_5204.1	chr1	13426709	13426909	-	1	NA	NA	NA	-52726	NM_008678	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.020000	0.507463	
mm_93304.1	chr10	97596837	97597037	-	1	NA	NA	NA	-6	NR_045356	75025	Mm.159401	NR_045356		4930473O22Rik	-	RIKEN cDNA 4930473O22 gene	ncRNA	0.000000	0.412935	
mm_121656.1	chr14	11334947	11335147	-	1	NA	NA	NA	52570	NR_105811	102466641		NR_105811	ENSMUSG00000099218	Mir5124b	Gm27681|mmu-mir-5124b	microRNA 5124b	ncRNA	0.005000	0.313433	
mm_93441.1	chr10	109883660	109883860	-	1	NA	NA	NA	116459	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.020000	0.412935	35(TTCTCTAAATGG,-,0.00)
mm_7753.1	chr1	131097735	131097935	-	1	NA	NA	NA	8	NM_008551	17164	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.110000	0.726368	-99(TCCCCTTTAAGG,-,0.00),-98(CCCCTTTAAGGC,-,0.00),-97(CCCTTTAAGGCC,+,0.00),-96(CCTTTAAGGCCC,+,0.00),-36(TCCCCTTTAAGG,-,0.00),-34(CCCTTTAAGGAC,+,0.00)
mm_129234.1	chr15	76616759	76616959	-	1	NA	NA	NA	-7	NM_028064	72027	Mm.276829	NM_028064	ENSMUSG00000063354	Slc39a4	1600025H15Rik|AU041686|AWMS2|ZIP4	solute carrier family 39 (zinc transporter), member 4	protein-coding	0.015000	0.587065	
mm_41218.1	chr5	88583459	88583659	+	1	NA	NA	NA	46	NM_027530	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.020000	0.467662	
mm_166924.1	chr7	31054494	31054694	-	1	NA	NA	NA	259	NM_052991	56188	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	0.005000	0.542289	
mm_133802.1	chr16	95298605	95298805	+	1	NA	NA	NA	41147	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.000000	0.517413	
mm_107600.1	chr12	49382995	49383195	+	1	NA	NA	NA	88	NM_008241	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.070000	0.497512	
mm_13617.1	chr2	113439681	113439881	+	1	NA	NA	NA	-1283	NM_001285459	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.005000	0.348259	
mm_85343.1	chr9	103202025	103202225	-	1	NA	NA	NA	-60	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.075000	0.587065	
mm_29389.1	chr3	108889815	108890015	-	1	NA	NA	NA	93	NM_177091	320181	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0.005000	0.482587	
mm_137078.1	chr17	21091124	21091324	+	1	NA	NA	NA	16	NR_137274	328766	Mm.50947	NR_137274	ENSMUSG00000102080	Gm5092	4933430A09	predicted gene 5092	ncRNA	0.000000	0.442786	
mm_27534.1	chr3	57575698	57575898	-	1	NA	NA	NA	78	NM_133784	97064	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0.085000	0.606965	
mm_7404.1	chr1	119053478	119053678	-	1	NA	NA	NA	41	NM_001081125	14633	Mm.273292	NM_001081125	ENSMUSG00000048402	Gli2	-	GLI-Kruppel family member GLI2	protein-coding	0.110000	0.661692	
mm_117033.1	chr13	58274272	58274472	-	1	NA	NA	NA	-184	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.145000	0.741294	
mm_164737.1	chr17	71019444	71019644	+	1	NA	NA	NA	-13	NM_010867	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.015000	0.567164	-88(GGCCATAAAAGG,-,0.00)
mm_172261.1	chr6	75296553	75296753	-	1	NA	NA	NA	-1825632	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.010000	0.497512	
mm_90622.1	chr10	128428150	128428350	+	1	NA	NA	NA	16634	NM_026259	67588	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	0.020000	0.432836	
mm_159641.1	chr4	142210052	142210252	-	1	NA	NA	NA	56	NM_144531	71529	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	0.030000	0.611940	
mm_56255.1	chr6	90781930	90782130	-	1	NA	NA	NA	28093	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.050000	0.646766	
mm_89637.1	chr10	96620768	96620968	+	1	NA	NA	NA	3867	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.000000	0.398010	-38(TTCTCTAAAAGG,-,0.00)
mm_36589.1	chr4	88428904	88429104	-	1	NA	NA	NA	9922	NM_025760	66775	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.000000	0.398010	-18(CCATTTAAAGGG,+,0.00),-18(CCATTTAAAGGG,-,0.00)
mm_136307.1	chr16	91646833	91647033	-	1	NA	NA	NA	39	NM_010256	14450	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	0.115000	0.691542	
mm_12843.1	chr2	82507558	82507758	+	1	NA	NA	NA	454000	NM_175513	241514	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding	0.050000	0.487562	
mm_16446.1	chr2	180454832	180455032	+	1	NA	NA	NA	-6046	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.015000	0.537313	
mm_81777.1	chr9	114688717	114688917	+	1	NA	NA	NA	-14	NM_146229	235661	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	0.135000	0.721393	
mm_63976.1	chr7	139971618	139971818	+	1	NA	NA	NA	7037	NM_001347614	381933	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0.015000	0.592040	
mm_160765.1	chr10	95322792	95322992	-	1	NA	NA	NA	817	NM_001330138	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.015000	0.517413	
mm_121468.1	chr14	120911031	120911231	+	1	NA	NA	NA	-63	NM_023579	70572	Mm.221452	NM_023579	ENSMUSG00000030662	Ipo5	1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5	importin 5	protein-coding	0.165000	0.830846	
mm_150546.1	chr19	39315555	39315755	+	1	NA	NA	NA	28570	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.000000	0.243781	
mm_119065.1	chr14	30825471	30825671	+	1	NA	NA	NA	-23	NM_028839	69179	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	0.110000	0.696517	
mm_118207.1	chr13	109903575	109903775	-	1	NA	NA	NA	-134	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.030000	0.601990	
mm_63624.1	chr7	128266269	128266469	+	1	NA	NA	NA	672	NM_133254	246787	Mm.38870	NM_133254	ENSMUSG00000030781	Slc5a2	Sglt2	solute carrier family 5 (sodium/glucose cotransporter), member 2	protein-coding	0.010000	0.572139	
mm_105294.1	chr11	102476484	102476684	-	1	NA	NA	NA	-6701	NM_010575	16399	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0.015000	0.482587	
mm_147918.1	chr18	65697516	65697716	-	1	NA	NA	NA	-652	NM_177028	319888	Mm.183576	NM_177028	ENSMUSG00000046610	Oacyl	5330437I02Rik|Acyl3	O-acyltransferase like	protein-coding	0.035000	0.457711	
mm_162792.1	chr10	75822415	75822615	-	1	NA	NA	NA	28	NM_029472	75886	Mm.268996	NM_029472	ENSMUSG00000009093	Gstt4	4930583C14Rik|AI507011	glutathione S-transferase, theta 4	protein-coding	0.005000	0.552239	
mm_161559.1	chr16	16504067	16504267	-	1	NA	NA	NA	23244	NM_001301818	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.010000	0.432836	-64(TCTTTTAAATTC,+,0.00)
mm_76583.1	chr8	89015579	89015779	-	1	NA	NA	NA	-9056	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.000000	0.512438	
mm_79480.1	chr9	56994769	56994969	+	1	NA	NA	NA	-99	NM_019651	56294	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	0.100000	0.686567	
mm_21119.1	chr2	153530129	153530329	-	1	NA	NA	NA	-258	NM_001134300	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.105000	0.746269	
mm_30382.1	chr3	152243898	152244098	-	1	NA	NA	NA	22322	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.010000	0.293532	
mm_144014.1	chr17	88625407	88625607	-	1	NA	NA	NA	-1048	NM_029858	77057	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.040000	0.587065	
mm_4313.1	chr1	171845628	171845828	+	1	NA	NA	NA	6031	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.383085	57(GCTTATATGAGG,+,0.00)
mm_118044.1	chr13	101694638	101694838	-	1	NA	NA	NA	-2108	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.065000	0.582090	
mm_161671.1	chr17	13355200	13355400	+	1	NA	NA	NA	728	NM_001167578	100041352	Mm.490251	NM_001167578	ENSMUSG00000052469	Tcp10c	D17Leh66C|D17Leh66ca|Gm9880|T66C-a|Tcp-10c	t-complex protein 10c	protein-coding	0.025000	0.537313	
mm_81750.1	chr9	113955898	113956098	+	1	NA	NA	NA	25064	NM_013699	22221	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0.020000	0.527363	
mm_111799.1	chr12	104988172	104988372	-	1	NA	NA	NA	10405	NM_001042699	212073	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.030000	0.482587	69(CATTTTAAGGCC,+,0.00)
mm_46562.1	chr5	106926165	106926365	-	1	NA	NA	NA	-375	NM_001252516	330149	Mm.121664	NM_177873	ENSMUSG00000043410	Hfm1	A330009G12Rik|Gm1046|Mer3|Sec63d1	HFM1, ATP-dependent DNA helicase homolog	protein-coding	0.115000	0.721393	
mm_118595.1	chr14	20682655	20682855	+	1	NA	NA	NA	-7880	NR_105911	102465571		NR_105911	ENSMUSG00000098602	Mir6946	Gm27799|mmu-mir-6946	microRNA 6946	ncRNA	0.005000	0.601990	
mm_43028.1	chr5	123915000	123915200	+	1	NA	NA	NA	7825	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.000000	0.447761	-34(GACTTTAAAAAG,-,0.00),-32(CTTTAAAAAGGA,+,0.00)
mm_16791.1	chr2	10068572	10068772	-	1	NA	NA	NA	11838	NM_020615	11949	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	0.040000	0.512438	
mm_142699.1	chr17	47834586	47834786	-	1	NA	NA	NA	5	NM_001109973	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.060000	0.582090	-31(ACTTAAAAAGGC,+,0.00)
mm_92638.1	chr10	80345137	80345337	-	1	NA	NA	NA	3211	NM_001285435	66548	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0.055000	0.661692	
mm_72026.1	chr8	70756363	70756563	+	1	NA	NA	NA	1784	NM_001166399	19339	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0.035000	0.547264	
mm_3056.1	chr1	134063426	134063626	+	1	NA	NA	NA	15629	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.045000	0.651741	
mm_42502.1	chr5	115490228	115490428	+	1	NA	NA	NA	-5844	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.060000	0.442786	
mm_170420.1	chr18	70326496	70326696	-	1	NA	NA	NA	-82012	NM_029346	75577	Mm.58214	NM_029346	ENSMUSG00000024512	Dynap	2310002L13Rik	dynactin associated protein	protein-coding	0.040000	0.527363	
mm_43298.1	chr5	134582699	134582899	+	1	NA	NA	NA	109	NM_020022	19718	Mm.332739	NM_020022	ENSMUSG00000023104	Rfc2	2610008M13Rik|40kDa|AI326953|Recc2	replication factor C (activator 1) 2	protein-coding	0.080000	0.686567	
mm_70886.1	chr8	25518664	25518864	+	1	NA	NA	NA	5	NM_001079908	14182	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.110000	0.716418	
mm_73321.1	chr8	105269712	105269912	+	1	NA	NA	NA	11	NM_001256044	26386	Mm.89204	NM_011939	ENSMUSG00000033249	Hsf4	HSF 4|HSTF 4|HSTF4|ldis1|mHSF4	heat shock transcription factor 4	protein-coding	0.130000	0.756219	
mm_19052.1	chr2	77259940	77260140	-	1	NA	NA	NA	20552	NM_175465	228071	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.005000	0.422886	
mm_85504.1	chr9	106199170	106199370	-	1	NA	NA	NA	-37	NM_026447	67905	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	0.100000	0.736318	
mm_165457.1	chr2	158166607	158166807	-	1	NA	NA	NA	-20315	NM_009373	21817	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.025000	0.462687	
mm_3526.1	chr1	150165096	150165296	+	1	NA	NA	NA	-248	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.015000	0.512438	-98(CCCTCTTAGAGG,-,0.00),-97(CCTCTTAGAGGG,+,0.00)
mm_147179.1	chr18	36766128	36766328	-	1	NA	NA	NA	-14	NM_173383	213236	Mm.234464	NM_173383	ENSMUSG00000044595	Dnd1	BC034897|RBMS4|Ter	DND microRNA-mediated repression inhibitor 1	protein-coding	0.045000	0.532338	
mm_114482.1	chr13	69611938	69612138	+	1	NA	NA	NA	22	NM_145354	28114	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	0.115000	0.691542	
mm_47793.1	chr5	132338136	132338336	-	1	NA	NA	NA	204107	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.005000	0.398010	
mm_135635.1	chr16	52343707	52343907	-	1	NA	NA	NA	109274	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.343284	
mm_112644.1	chr13	16016952	16017152	+	1	NA	NA	NA	5201	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.567164	
mm_69474.1	chr7	133730768	133730968	-	1	NA	NA	NA	21535	NM_025392	66165	Mm.389983	NM_025392	ENSMUSG00000030983	Bccip	1110013J05Rik|TOK-1	BRCA2 and CDKN1A interacting protein	protein-coding	0.020000	0.482587	
mm_26231.1	chr3	139205798	139205998	+	1	NA	NA	NA	5	NM_198659	381476	Mm.188334	NM_198659	ENSMUSG00000047940	Stpg2	B930007M17Rik|Gm1017	sperm tail PG rich repeat containing 2	protein-coding	0.090000	0.656716	
mm_105284.1	chr11	102436080	102436280	-	1	NA	NA	NA	5858	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.020000	0.557214	
mm_155662.1	chrX	87238256	87238456	+	1	NA	NA	NA	877267	NM_001160403	331461	Mm.121680	NM_001160403	ENSMUSG00000052372	Il1rapl1	6330532G10Rik|C030039N24|IL1R8|IL1RAPL|MRX34|OPHN4|TIGIRR-2	interleukin 1 receptor accessory protein-like 1	protein-coding	0.050000	0.577114	
mm_116161.1	chr13	30660136	30660336	-	1	NA	NA	NA	177	NM_134068	105352	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.060000	0.656716	
mm_109028.1	chr12	104052641	104052841	+	1	NA	NA	NA	-8298	NM_026535	68054	Mm.20286	NM_026535	ENSMUSG00000041567	Serpina12	4632419J12Rik	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12	protein-coding	0.010000	0.442786	
mm_68490.1	chr7	111074634	111074834	-	1	NA	NA	NA	8296	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.015000	0.437811	
mm_122998.1	chr14	54992605	54992805	-	1	NA	NA	NA	1844	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.025000	0.567164	
mm_124040.1	chr14	77036474	77036674	-	1	NA	NA	NA	43	NM_172488	210808	Mm.89278	NM_172488	ENSMUSG00000044350	Lacc1	9030625A04Rik	laccase (multicopper oxidoreductase) domain containing 1	protein-coding	0.145000	0.791045	
mm_116536.1	chr13	45875989	45876189	-	1	NA	NA	NA	88902	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.010000	0.422886	
mm_65341.1	chr7	24981516	24981716	-	1	NA	NA	NA	6051	NR_106014	102465634		NR_106014	ENSMUSG00000099258	Mir7047	Gm27270|mmu-mir-7047	microRNA 7047	ncRNA	0.040000	0.611940	
mm_162072.1	chrX	20460478	20460678	+	1	NA	NA	NA	34890	NM_001289684	382207	Mm.281517	NM_199317	ENSMUSG00000037315	Jade3	5730598B06|AI851988|AW544806|Phf16|mKIAA0215	jade family PHD finger 3	protein-coding	0.005000	0.348259	
mm_7850.1	chr1	132390237	132390437	-	1	NA	NA	NA	-19	NM_001311107	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.025000	0.567164	
mm_81206.1	chr9	107575812	107576012	+	1	NA	NA	NA	-1015	NM_008317	15586	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	0.020000	0.502488	
mm_131714.1	chr16	21204954	21205154	+	1	NA	NA	NA	259	NM_010143	13845	Mm.6972	NM_010143	ENSMUSG00000005958	Ephb3	AW456895|Cek10|Etk2|HEK2|MDK5|Sek4|Tyro6	Eph receptor B3	protein-coding	0.110000	0.711443	
mm_119262.1	chr14	34016945	34017145	+	1	NA	NA	NA	-24033	NM_001034880	432838	Mm.318383	NM_001034880	ENSMUSG00000072624	Gm5460	EG432838	predicted gene 5460	protein-coding	0.000000	0.527363	
mm_20237.1	chr2	126315466	126315666	-	1	NA	NA	NA	163425	NM_026981	69185	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	0.000000	0.487562	
mm_139227.1	chr17	47730595	47730795	+	1	NA	NA	NA	3853	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.040000	0.621891	
mm_33475.1	chr4	130818608	130818808	+	1	NA	NA	NA	26171	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.035000	0.601990	
mm_3583.1	chr1	151343922	151344122	+	1	NA	NA	NA	-476	NM_001039512	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.015000	0.517413	-98(TTTTTTAAACAC,+,0.00)
mm_78711.1	chr9	41446583	41446783	+	1	NA	NA	NA	-28210	NR_131931	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.025000	0.507463	
mm_121163.1	chr14	103012734	103012934	+	1	NA	NA	NA	20969	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.005000	0.562189	
mm_144085.1	chr17	94749909	94750109	-	1	NA	NA	NA	-91	NR_024720	77022	Mm.440259	NR_024720	ENSMUSG00000098090	2700099C18Rik	9430041D22Rik	NDC80 homolog, kinetochore complex component pseudogene	pseudo	0.135000	0.646766	
mm_129116.1	chr15	76080839	76081039	-	1	NA	NA	NA	7	NM_133691	67959	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	0.165000	0.646766	
mm_14615.1	chr2	136723676	136723876	+	1	NA	NA	NA	10326	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.010000	0.432836	
mm_717.1	chr1	42695618	42695818	+	1	NA	NA	NA	-893	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.060000	0.616915	
mm_38592.1	chr4	141822204	141822404	-	1	NA	NA	NA	3701	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.015000	0.542289	
mm_139197.1	chr17	47630422	47630622	+	1	NA	NA	NA	-168	NM_198421	224836	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	0.040000	0.507463	
mm_40417.1	chr5	53375929	53376129	+	1	NA	NA	NA	108923	NM_001145433	66278	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.010000	0.522388	
mm_122474.1	chr14	45610472	45610672	-	1	NA	NA	NA	47481	NR_039593	100628600		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	0.035000	0.507463	
mm_122578.1	chr14	50833858	50834058	-	1	NA	NA	NA	26012	NM_009632	11546	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0.020000	0.601990	
mm_155610.1	chrX	83043199	83043399	+	1	NA	NA	NA	94429	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.005000	0.442786	
mm_139158.1	chr17	47540665	47540865	+	1	NA	NA	NA	35714	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.025000	0.432836	
mm_107043.1	chr12	15606279	15606479	+	1	NA	NA	NA	194722	NR_105809	102465204		NR_105809	ENSMUSG00000098480	Mir6387	Gm27281|mmu-mir-6387	microRNA 6387	ncRNA	0.010000	0.393035	46(TGGTTTATAAAG,-,0.00),48(GTTTATAAAGGA,+,0.00)
mm_145655.1	chr18	61130335	61130535	+	1	NA	NA	NA	12967	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.030000	0.641791	
mm_31493.1	chr4	53120585	53120785	+	1	NA	NA	NA	39210	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.030000	0.527363	-40(TAGCCTAAAAGG,-,0.00)
mm_83662.1	chr9	49568426	49568626	-	1	NA	NA	NA	50238	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.015000	0.497512	
mm_53536.1	chr6	136659402	136659602	+	1	NA	NA	NA	2391	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.020000	0.407960	59(ACCCTTTAAAGC,-,0.00),60(CCCTTTAAAGCT,+,0.00),61(CCTTTAAAGCTA,+,0.00)
mm_129671.1	chr15	81364713	81364913	-	1	NA	NA	NA	-4048	NM_011399	20524	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	0.005000	0.368159	-47(TCTTTAAAACTG,+,0.00)
mm_6873.1	chr1	84284488	84284688	-	1	NA	NA	NA	57	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.155000	0.791045	
mm_151452.1	chr19	57780470	57780670	+	1	NA	NA	NA	169536	NM_181415	226255	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0.005000	0.338308	
mm_151863.1	chr19	5797316	5797516	-	1	NA	NA	NA	-1435	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.010000	0.422886	
mm_14180.1	chr2	126928928	126929128	+	1	NA	NA	NA	4207	NM_023220	66552	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	0.010000	0.388060	
mm_113543.1	chr13	37873352	37873552	+	1	NA	NA	NA	-14982	NR_033218	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.000000	0.492537	
mm_157827.1	chrX	74241181	74241381	-	1	NA	NA	NA	5253	NM_010227	192176	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	0.005000	0.616915	
mm_53058.1	chr6	124829459	124829659	+	1	NA	NA	NA	-75	NM_013700	22225	Mm.3571	NM_013700	ENSMUSG00000038429	Usp5	AA407472|ISOT|ISOT-1|Ucht	ubiquitin specific peptidase 5 (isopeptidase T)	protein-coding	0.080000	0.606965	
mm_96046.1	chr11	59558930	59559130	+	1	NA	NA	NA	12708	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.005000	0.467662	
mm_94657.1	chr11	17054594	17054794	+	1	NA	NA	NA	2760	NM_029861	380686	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	0.015000	0.502488	
mm_169152.1	chr13	63218038	63218238	-	1	NA	NA	NA	-21891	NR_110520	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.045000	0.497512	-40(CTCCTTAAGAGG,-,0.00)
mm_80198.1	chr9	72400303	72400503	+	1	NA	NA	NA	-38126	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.005000	0.363184	
mm_52575.1	chr6	116350820	116351020	+	1	NA	NA	NA	12898	NM_027920	71779	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	0.020000	0.472637	
mm_133788.1	chr16	95258080	95258280	+	1	NA	NA	NA	622	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.005000	0.477612	
mm_159366.1	chr3	88349072	88349272	+	1	NA	NA	NA	12912	NM_178246	229512	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.010000	0.497512	
mm_167683.1	chr9	82985811	82986011	+	1	NA	NA	NA	-10422	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.000000	0.333333	-81(TTTTTTAAAGGT,+,0.00),31(CTTTATATACTC,+,0.00)
mm_62918.1	chr7	118243766	118243966	+	1	NA	NA	NA	-41	NR_027879	67745	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0.055000	0.641791	
mm_122256.1	chr14	34201492	34201692	-	1	NA	NA	NA	41	NM_183209	432839	Mm.294643	NM_183209	ENSMUSG00000071531	Gprin2	C130040D06Rik|C230073P13|Gm286|mKIAA0514	G protein regulated inducer of neurite outgrowth 2	protein-coding	0.090000	0.731343	
mm_110459.1	chr12	51691955	51692155	-	1	NA	NA	NA	-141	NM_052973	94186	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.110000	0.721393	
mm_1862.1	chr1	84952617	84952817	+	1	NA	NA	NA	-17634	NM_027921	71781	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.025000	0.512438	
mm_73450.1	chr8	106305127	106305327	+	1	NA	NA	NA	22998	NR_126090	75044	Mm.445896	NR_126090		4930506A18Rik	-	RIKEN cDNA 4930506A18 gene	ncRNA	0.005000	0.492537	
mm_34328.1	chr4	142017921	142018121	+	1	NA	NA	NA	123	NR_131014	78917	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.040000	0.562189	
mm_69425.1	chr7	132786828	132787028	-	1	NA	NA	NA	7	NM_175268	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.010000	0.547264	
mm_115347.1	chr13	112660667	112660867	+	1	NA	NA	NA	1	NM_178746	268706	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0.055000	0.562189	
mm_160650.1	chr9	110951221	110951421	+	1	NA	NA	NA	-224	NM_028838	74249	Mm.307615	NM_028838	ENSMUSG00000032495	Lrrc2	2400002D05Rik|4933431K03Rik	leucine rich repeat containing 2	protein-coding	0.020000	0.547264	
mm_65625.1	chr7	27541688	27541888	-	1	NA	NA	NA	11430	NM_011116	18807	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.025000	0.567164	
mm_126652.1	chr15	84167714	84167914	+	1	NA	NA	NA	-2	NM_054088	116939	Mm.390817	NM_054088	ENSMUSG00000041653	Pnpla3	Adpn	patatin-like phospholipase domain containing 3	protein-coding	0.060000	0.626866	-12(GGCTCTTTAAGC,-,0.00)
mm_74104.1	chr8	122848322	122848522	+	1	NA	NA	NA	48	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.065000	0.671642	
mm_172094.1	chr6	23090817	23091017	+	1	NA	NA	NA	42069	NM_013930	30956	Mm.18651	NM_013930	ENSMUSG00000029695	Aass	LKR|LKR/SDH|LOR|LOR/SDH|Lorsdh|SDH	aminoadipate-semialdehyde synthase	protein-coding	0.030000	0.532338	
mm_77397.1	chr8	120419850	120420050	-	1	NA	NA	NA	-68916	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.030000	0.582090	
mm_163928.1	chr14	47277039	47277239	+	1	NA	NA	NA	-4	NM_080843	67296	Mm.23957	NM_080843	ENSMUSG00000048379	Socs4	3110032M18Rik|A730004F22Rik|AI427843|AU015727|AU015859|Socs7	suppressor of cytokine signaling 4	protein-coding	0.100000	0.726368	
mm_124604.1	chr15	3279070	3279270	+	1	NA	NA	NA	8193	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.010000	0.467662	
mm_36036.1	chr4	57240907	57241107	-	1	NA	NA	NA	60830	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.040000	0.557214	-76(TTATTTAAAAGC,-,0.00)
mm_62465.1	chr7	101663557	101663757	+	1	NA	NA	NA	-111	NM_009191	20480	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	0.065000	0.557214	59(CACCTTATAAGC,-,0.00),61(CCTTATAAGCGG,+,0.00)
mm_21522.1	chr2	163634368	163634568	-	1	NA	NA	NA	-10382	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.005000	0.373134	
mm_170858.1	chr2	180725170	180725370	+	1	NA	NA	NA	-69	NM_183161	228993	Mm.87189	NM_183161	ENSMUSG00000023393	Slc17a9	1700019H03Rik|BC019537|Vnut	solute carrier family 17, member 9	protein-coding	0.050000	0.641791	
mm_172519.1	chr7	80846799	80846999	-	1	NA	NA	NA	-15209	NM_009553	22691	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0.005000	0.502488	
mm_54458.1	chr6	34862493	34862693	-	1	NA	NA	NA	-553	NM_197986	68487	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.015000	0.472637	
mm_137163.1	chr17	23806425	23806625	+	1	NA	NA	NA	3338	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.005000	0.368159	
mm_153882.1	chr19	46940940	46941140	-	1	NA	NA	NA	21311	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.000000	0.308458	
mm_73565.1	chr8	109575742	109575942	+	1	NA	NA	NA	3330	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.055000	0.587065	
mm_101242.1	chr11	20712145	20712345	-	1	NA	NA	NA	29311	NM_001290545	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.025000	0.472637	
mm_91448.1	chr10	33939791	33939991	-	1	NA	NA	NA	11321	NM_028287	72580	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	0.005000	0.432836	
mm_24594.1	chr3	93445123	93445323	+	1	NA	NA	NA	2893	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.045000	0.542289	
mm_145194.1	chr18	49880640	49880840	+	1	NA	NA	NA	47743	NM_001081371	240283	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0.020000	0.338308	
mm_30600.1	chr4	6385412	6385612	+	1	NA	NA	NA	19832	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.005000	0.402985	
mm_66876.1	chr7	57509846	57510046	-	1	NA	NA	NA	63	NM_176942	110886	Mm.273114	NM_176942	ENSMUSG00000055078	Gabra5	A230018I05Rik	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5	protein-coding	0.145000	0.731343	
mm_54905.1	chr6	47594907	47595107	-	1	NA	NA	NA	23	NM_007971	14056	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.130000	0.696517	
mm_5364.1	chr1	25829967	25830167	-	1	NA	NA	NA	-360	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.100000	0.681592	
mm_111186.1	chr12	84148374	84148574	-	1	NA	NA	NA	15	NM_027438	70481	Mm.444348	NM_027438	ENSMUSG00000054383	Pnma1	5730402C15Rik	paraneoplastic antigen MA1	protein-coding	0.110000	0.671642	
mm_123697.1	chr14	69707457	69707657	-	1	NA	NA	NA	27	NM_001146012	71843	Mm.27738	NM_001146012	ENSMUSG00000034194	R3hcc1	1700020M16Rik|AA407796	R3H domain and coiled-coil containing 1	protein-coding	0.080000	0.626866	
mm_77160.1	chr8	111687089	111687289	-	1	NA	NA	NA	2485	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.030000	0.611940	
mm_134332.1	chr16	16455973	16456173	-	1	NA	NA	NA	71338	NM_001301818	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.005000	0.328358	-7(TTTTTTAAAGCT,+,0.00)
mm_28737.1	chr3	95736955	95737155	-	1	NA	NA	NA	-2082	NR_105981	102466787		NR_105981	ENSMUSG00000098737	Mir7014	Gm27837|mmu-mir-7014	microRNA 7014	ncRNA	0.015000	0.567164	
mm_166720.1	chr6	120302625	120302825	-	1	NA	NA	NA	-8166	NM_198884	330406	Mm.321840	NM_198884	ENSMUSG00000041372	B4galnt3	AB114826|B4GalNAcT3|C330047A21	beta-1,4-N-acetyl-galactosaminyl transferase 3	protein-coding	0.035000	0.512438	
mm_37599.1	chr4	126751919	126752119	-	1	NA	NA	NA	1410	NM_011986	26562	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	0.030000	0.606965	
mm_138747.1	chr17	37009868	37010068	+	1	NA	NA	NA	6302	NR_033137	22715	Mm.305561	NM_009559	ENSMUSG00000036036	Zfp57	G19|Zfp-57	zinc finger protein 57	protein-coding	0.030000	0.522388	
mm_147805.1	chr18	61665309	61665509	-	1	NA	NA	NA	129	NR_045402	328968	Mm.392305	NR_045402		Carmn	Carmen|E330013P06|Gm16908|Mir143hg	cardiac mesoderm enhancer-associated non-coding RNA	ncRNA	0.020000	0.577114	-32(GCTTAAAAATGC,+,0.00)
mm_15797.1	chr2	164445328	164445528	+	1	NA	NA	NA	-2240	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.000000	0.388060	-54(CCTTTTAAAAAA,+,0.00)
mm_114388.1	chr13	63252507	63252707	+	1	NA	NA	NA	12578	NR_110521	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.010000	0.353234	
mm_85621.1	chr9	107614843	107615043	-	1	NA	NA	NA	-5702	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.025000	0.587065	
mm_86736.1	chr10	19117338	19117538	+	1	NA	NA	NA	-24311	NR_038021	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.015000	0.432836	
mm_49573.1	chr6	30640818	30641018	+	1	NA	NA	NA	1700	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.010000	0.512438	
mm_83440.1	chr9	45000924	45001124	-	1	NA	NA	NA	8566	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.015000	0.527363	
mm_159124.1	chr2	70562665	70562865	+	1	NA	NA	NA	592	NR_040496	68986	Mm.437697	NR_040496	ENSMUSG00000087264	Gad1os	1500002O10Rik	glutamate decarboxylase 1, opposite strand	ncRNA	0.105000	0.681592	
mm_77921.1	chr9	7352507	7352707	+	1	NA	NA	NA	5233	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.398010	
mm_7125.1	chr1	90843898	90844098	-	1	NA	NA	NA	-27	NM_001243008	12835	Mm.7562	NM_009935	ENSMUSG00000048126	Col6a3	AI507288|Col6a-3	collagen, type VI, alpha 3	protein-coding	0.015000	0.597015	
mm_33477.1	chr4	130818677	130818877	+	1	NA	NA	NA	26240	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.025000	0.601990	
mm_27152.1	chr3	33082780	33082980	-	1	NA	NA	NA	180	NM_021483	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.030000	0.557214	
mm_36011.1	chr4	56845929	56846129	-	1	NA	NA	NA	19182	NM_018761	54366	Mm.218891	NM_018761	ENSMUSG00000038816	Ctnnal1	ACRP|AI616177|AW545119|C86009|Catnal1	catenin (cadherin associated protein), alpha-like 1	protein-coding	0.030000	0.572139	
mm_33091.1	chr4	124695815	124696015	+	1	NA	NA	NA	-2361	NM_026031	67205	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11l	2700082D03Rik|CGI-94|Cgi94|Utp11	UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	protein-coding	0.030000	0.507463	
mm_54711.1	chr6	39725324	39725524	-	1	NA	NA	NA	39	NM_139294	109880	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	0.160000	0.830846	
mm_107638.1	chr12	52446796	52446996	+	1	NA	NA	NA	33713	NR_136881	102638611	Mm.363799	NR_136881		Gm35135	-	predicted gene, 35135	ncRNA	0.025000	0.398010	
mm_87862.1	chr10	61175621	61175821	+	1	NA	NA	NA	459	NM_023064	65971	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.020000	0.592040	
mm_113066.1	chr13	23750978	23751178	+	1	NA	NA	NA	-10	NM_175660	319172	Mm.423402	NM_175660	ENSMUSG00000061615	Hist1h2ab	H2A.1|H2a-53	histone cluster 1, H2ab	protein-coding	0.030000	0.417910	
mm_143006.1	chr17	56434491	56434691	-	1	NA	NA	NA	-15682	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0.060000	0.621891	
mm_56447.1	chr6	97518994	97519194	-	1	NA	NA	NA	-31274	NM_001346637	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.005000	0.402985	
mm_74618.1	chr8	12915656	12915856	-	1	NA	NA	NA	-137	NM_178076	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.065000	0.651741	
mm_74993.1	chr8	27202430	27202630	-	1	NA	NA	NA	17	NM_029674	76615	Mm.272794	NM_029674	ENSMUSG00000039720	Got1l1	1700083M11Rik	glutamic-oxaloacetic transaminase 1-like 1	protein-coding	0.020000	0.537313	
mm_98302.1	chr11	90032899	90033099	+	1	NA	NA	NA	2651	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.020000	0.467662	
mm_30306.1	chr3	149445115	149445315	-	1	NA	NA	NA	170478	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.015000	0.462687	77(TCTTATAAAGGA,+,0.00)
mm_140192.1	chr17	83350911	83351111	+	1	NA	NA	NA	80	NM_001114362	78798	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0.185000	0.796020	
mm_170140.1	chr17	39848685	39848885	+	1	NA	NA	NA	5788	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.095000	0.567164	
mm_86326.1	chr9	123061676	123061876	-	1	NA	NA	NA	27035	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.015000	0.467662	
mm_84314.1	chr9	63718944	63719144	-	1	NA	NA	NA	38950	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.000000	0.482587	
mm_152068.1	chr19	6542902	6543102	-	1	NA	NA	NA	68	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.005000	0.502488	
mm_170268.1	chr18	20961456	20961656	+	1	NA	NA	NA	16931	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.115000	0.736318	
mm_34922.1	chr4	155802819	155803019	+	1	NA	NA	NA	-699	NM_025570	66448	Mm.23825	NM_025570	ENSMUSG00000029066	Mrpl20	2610008D01Rik|4930425I20Rik	mitochondrial ribosomal protein L20	protein-coding	0.040000	0.557214	
mm_63379.1	chr7	127212758	127212958	+	1	NA	NA	NA	1250	NM_016754	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.010000	0.532338	
mm_130745.1	chr15	101256824	101257024	-	1	NA	NA	NA	-9922	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.025000	0.582090	
mm_133727.1	chr16	93778629	93778829	+	1	NA	NA	NA	-53392	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.030000	0.542289	
mm_52006.1	chr6	92940507	92940707	+	1	NA	NA	NA	25	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.045000	0.611940	
mm_17652.1	chr2	32045501	32045701	-	1	NA	NA	NA	-5345	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	0.010000	0.616915	
mm_81751.1	chr9	113955924	113956124	+	1	NA	NA	NA	25090	NM_013699	22221	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0.020000	0.517413	
mm_98470.1	chr11	94950220	94950420	+	1	NA	NA	NA	14096	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.025000	0.597015	
mm_89610.1	chr10	96026614	96026814	+	1	NA	NA	NA	86051	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.020000	0.447761	
mm_142303.1	chr17	42741926	42742126	-	1	NA	NA	NA	153	NM_001033493	435529	Mm.136350	NM_001033493	ENSMUSG00000057899	Adgrf2	Gpr111|PGR20	adhesion G protein-coupled receptor F2	protein-coding	0.030000	0.587065	
mm_50645.1	chr6	51464324	51464524	+	1	NA	NA	NA	5470	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.010000	0.393035	
mm_112600.1	chr13	14161191	14161391	+	1	NA	NA	NA	97507	NM_198122	94246	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.000000	0.338308	
mm_81964.1	chr9	120933794	120933994	+	1	NA	NA	NA	316	NM_001165902	12387	Mm.291928	NM_007614	ENSMUSG00000006932	Ctnnb1	Bfc|Catnb|Mesc	catenin (cadherin associated protein), beta 1	protein-coding	0.115000	0.676617	
mm_110813.1	chr12	72374236	72374436	-	1	NA	NA	NA	34718	NM_001286448	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.040000	0.557214	
mm_165117.1	chr19	60812121	60812321	-	1	NA	NA	NA	651	NM_001167829	67894	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	0.035000	0.447761	64(GACTATAAAAGA,-,0.00)
mm_96726.1	chr11	69684270	69684470	+	1	NA	NA	NA	1184	NM_001159505	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.015000	0.562189	
mm_164751.1	chr17	78937141	78937341	+	1	NA	NA	NA	106	NM_028611	73694	Mm.104959	NM_028611	ENSMUSG00000024082	Ndufaf7	2410091C18Rik|AL033374|PRO1853	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7	protein-coding	0.050000	0.621891	
mm_146603.1	chr18	9508422	9508622	-	1	NA	NA	NA	-58372	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.005000	0.452736	
mm_4672.1	chr1	180393246	180393446	+	1	NA	NA	NA	-62797	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.005000	0.487562	
mm_70705.1	chr8	15057553	15057753	+	1	NA	NA	NA	0	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.000000	0.497512	-32(GGCCATAAATGG,-,0.00),-30(CCATAAATGGGG,+,0.00)
mm_51870.1	chr6	90552089	90552289	+	1	NA	NA	NA	1341	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.000000	0.522388	
mm_164228.1	chr15	87341965	87342165	+	1	NA	NA	NA	-202234	NM_001252310	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.005000	0.487562	
mm_17806.1	chr2	33431221	33431421	-	1	NA	NA	NA	3	NM_001085507	241311	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0.185000	0.855721	
mm_75825.1	chr8	70488021	70488221	-	1	NA	NA	NA	-763	NM_182991	67937	Mm.23002	NM_182991	ENSMUSG00000035964	Tmem59l	5330410G16Rik	transmembrane protein 59-like	protein-coding	0.035000	0.587065	
mm_145941.1	chr18	67343659	67343859	+	1	NA	NA	NA	195	NM_007702	12683	Mm.449	NM_007702	ENSMUSG00000024526	Cidea	AW212747	cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	protein-coding	0.095000	0.656716	
mm_25029.1	chr3	98148996	98149196	+	1	NA	NA	NA	-11538	NM_027665	71078	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.005000	0.412935	
mm_107744.1	chr12	58436868	58437068	+	1	NA	NA	NA	-167710	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	0.010000	0.467662	
mm_9983.1	chr1	191242092	191242292	-	1	NA	NA	NA	-58859	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.035000	0.502488	
mm_11739.1	chr2	37776189	37776389	+	1	NA	NA	NA	40	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.065000	0.716418	
mm_172975.1	chr9	93917641	93917841	-	1	NA	NA	NA	620340	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0.075000	0.661692	
mm_124051.1	chr14	77861230	77861430	-	1	NA	NA	NA	13587	NM_025384	66148	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	0.010000	0.467662	
mm_137832.1	chr17	30800570	30800770	+	1	NA	NA	NA	-101197	NM_021332	14652	Mm.390969	NM_021332	ENSMUSG00000024027	Glp1r	GLP-1R|GLP1Rc	glucagon-like peptide 1 receptor	protein-coding	0.030000	0.497512	
mm_54526.1	chr6	36387753	36387953	-	1	NA	NA	NA	-231	NM_203491	243764	Mm.448632	NM_203491	ENSMUSG00000045613	Chrm2	AChR-M2|Chrm-2|M2	cholinergic receptor, muscarinic 2, cardiac	protein-coding	0.040000	0.527363	
mm_99429.1	chr11	102407523	102407723	+	1	NA	NA	NA	-106	NM_026542	68066	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.165000	0.796020	
mm_26965.1	chr3	22077389	22077589	-	1	NA	NA	NA	837	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.020000	0.402985	
mm_151990.1	chr19	5849852	5850052	-	1	NA	NA	NA	-4472	NR_003513	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.025000	0.597015	31(TCCTTTTAATGC,-,0.00)
mm_9550.1	chr1	173922992	173923192	-	1	NA	NA	NA	-10046	NM_001033450	381308	Mm.490248	NM_001033450	ENSMUSG00000026536	Ifi211	A730048F03|Ifi205b|Mnda|ifi-205-B	interferon activated gene 211	protein-coding	0.005000	0.432836	
mm_43116.1	chr5	124628974	124629174	+	1	NA	NA	NA	22	NM_011596	21871	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0.135000	0.746269	
mm_126445.1	chr15	80711216	80711416	+	1	NA	NA	NA	3	NM_144812	213988	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.075000	0.621891	
mm_168281.1	chr1	107800047	107800247	+	1	NA	NA	NA	-117112	NR_102306	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	0.015000	0.492537	
mm_25968.1	chr3	132814894	132815094	+	1	NA	NA	NA	63602	NR_102297	101243624	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	0.010000	0.422886	
mm_170603.1	chr19	5843913	5844113	+	1	NA	NA	NA	1465	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.050000	0.557214	
mm_133499.1	chr16	90497084	90497284	+	1	NA	NA	NA	110787	NM_015755	26559	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.035000	0.562189	
mm_144124.1	chr18	4908823	4909023	+	1	NA	NA	NA	96437	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA	0.005000	0.502488	
mm_59509.1	chr7	27574335	27574535	+	1	NA	NA	NA	13959	NM_001122767	66367	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	0.010000	0.517413	
mm_147915.1	chr18	65582072	65582272	-	1	NA	NA	NA	1942	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.010000	0.527363	48(CCTTTTAGGGCT,+,0.00)
mm_75168.1	chr8	36669116	36669316	-	1	NA	NA	NA	-55273	NM_015802	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.010000	0.373134	
mm_58019.1	chr6	136661613	136661813	-	1	NA	NA	NA	180	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.080000	0.666667	
mm_76744.1	chr8	95331696	95331896	-	1	NA	NA	NA	154	NM_024467	79233	Mm.350514	NM_024467	ENSMUSG00000046556	Zfp319	AI225750|AI413472|Znf319|mKIAA1388	zinc finger protein 319	protein-coding	0.165000	0.786070	
mm_155944.1	chrX	104488937	104489137	+	1	NA	NA	NA	6255	NM_001081189	331487	Mm.438275	NM_001081189	ENSMUSG00000073016	Uprt	Gm774	uracil phosphoribosyltransferase	protein-coding	0.005000	0.333333	
mm_34887.1	chr4	155601175	155601375	+	1	NA	NA	NA	-141	NM_177186	320541	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	0.050000	0.621891	
mm_12879.1	chr2	84678357	84678557	+	1	NA	NA	NA	55	NM_025885	381379	Mm.219643	NM_025885	ENSMUSG00000027080	Med19	2410018M14Rik|3110040A13Rik|LCMR1	mediator complex subunit 19	protein-coding	0.050000	0.597015	
mm_173301.1	chrY	62723949	62724149	+	1	NA	NA	NA	-259204	NM_001160143	100040031	Mm.463839	NM_001160143	ENSMUSG00000093950	Gm20823	-	predicted gene, 20823	protein-coding	0.005000	0.402985	
mm_113388.1	chr13	33039850	33040050	+	1	NA	NA	NA	12536	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	0.010000	0.517413	3(CTCCATAAAGGC,-,0.00)
mm_18838.1	chr2	75119216	75119416	-	1	NA	NA	NA	293504	NM_016804	53375	Mm.292613	NM_016804	ENSMUSG00000027099	Mtx2	1500012G02Rik	metaxin 2	protein-coding	0.015000	0.482587	
mm_90939.1	chr10	12923023	12923223	-	1	NA	NA	NA	4	NR_038027	320273	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	0.055000	0.601990	
mm_11067.1	chr2	27676320	27676520	+	1	NA	NA	NA	-781	NM_011305	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.055000	0.552239	
mm_98989.1	chr11	98753422	98753622	+	1	NA	NA	NA	11737	NM_001313983	21833	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.015000	0.621891	
mm_68190.1	chr7	104307044	104307244	-	1	NA	NA	NA	-7887	NR_040749	622070	Mm.486406	NR_040749	ENSMUSG00000087175	Gm15133	OTTMUSG00000019186	predicted gene 15133	ncRNA	0.020000	0.447761	
mm_7922.1	chr1	133800935	133801135	-	1	NA	NA	NA	-47288	NM_213616	381290	Mm.188617	NM_213616	ENSMUSG00000026463	Atp2b4	Pmca4	ATPase, Ca++ transporting, plasma membrane 4	protein-coding	0.030000	0.616915	
mm_160353.1	chr8	21297296	21297496	+	1	NA	NA	NA	2	NM_007851	13239	Mm.426634	NM_007851	ENSMUSG00000074439	Defa5	Defa29|Defcr29|Defcr5	defensin, alpha, 5	protein-coding	0.000000	0.517413	-34(CCCTATAAATGC,+,0.00),-34(CCCTATAAATGC,-,0.00)
mm_104286.1	chr11	90121713	90121913	-	1	NA	NA	NA	91465	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.015000	0.318408	
mm_64336.1	chr7	142376343	142376543	+	1	NA	NA	NA	-2697	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.005000	0.597015	
mm_19351.1	chr2	90917947	90918147	-	1	NA	NA	NA	3	NM_025576	66461	Mm.23926	NM_025576		Ptpmt1	1110001D10Rik|2810004N20Rik|PLIP	protein tyrosine phosphatase, mitochondrial 1	protein-coding	0.070000	0.671642	
mm_157173.1	chrX	9470928	9471128	-	1	NA	NA	NA	-1704	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.492537	
mm_166892.1	chr7	28142127	28142327	+	1	NA	NA	NA	12761	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.030000	0.547264	20(CCCTTTCAAGCC,+,0.00)
mm_65328.1	chr7	24972590	24972790	-	1	NA	NA	NA	38	NM_010261	14470	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.050000	0.577114	
mm_105307.1	chr11	102780159	102780359	-	1	NA	NA	NA	18824	NM_001110778	11488	Mm.89854	NM_009613	ENSMUSG00000020926	Adam11	AW060611|Mdc	a disintegrin and metallopeptidase domain 11	protein-coding	0.015000	0.522388	
mm_115005.1	chr13	98316295	98316495	+	1	NA	NA	NA	572	NM_145455	218490	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	0.075000	0.631841	
mm_80634.1	chr9	89211190	89211390	+	1	NA	NA	NA	100	NM_026829	107885	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.105000	0.686567	
mm_44060.1	chr5	148265213	148265413	+	1	NA	NA	NA	127502	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.045000	0.601990	
mm_94589.1	chr11	11744029	11744229	+	1	NA	NA	NA	53952	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.005000	0.432836	
mm_101212.1	chr11	20077142	20077342	-	1	NA	NA	NA	35709	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.025000	0.442786	
mm_18569.1	chr2	65363939	65364139	-	1	NA	NA	NA	-13	NM_177074	320106	Mm.227703	NM_177074	ENSMUSG00000061171	Slc38a11	9330158F14Rik	solute carrier family 38, member 11	protein-coding	0.060000	0.671642	
mm_107783.1	chr12	61524520	61524720	+	1	NA	NA	NA	1453	NM_001310586	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.085000	0.666667	
mm_113699.1	chr13	43125927	43126127	+	1	NA	NA	NA	3188	NM_001005748	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.015000	0.522388	
mm_66793.1	chr7	47132305	47132505	-	1	NA	NA	NA	193	NM_001163565	19259	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0.105000	0.681592	
mm_39513.1	chr5	21256679	21256879	+	1	NA	NA	NA	70512	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.010000	0.492537	
mm_158155.1	chrX	103480436	103480636	-	1	NA	NA	NA	2697	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.000000	0.363184	83(GCCTTTATGGCA,+,0.00)
mm_85947.1	chr9	112108045	112108245	-	1	NA	NA	NA	10566	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.000000	0.363184	
mm_87672.1	chr10	58824367	58824567	+	1	NA	NA	NA	11108	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding	0.015000	0.422886	
mm_120462.1	chr14	65970794	65970994	+	1	NA	NA	NA	2411	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.005000	0.552239	
mm_93910.1	chr10	127030726	127030926	-	1	NA	NA	NA	-12	NM_025537	66399	Mm.29900	NM_025537	ENSMUSG00000040521	Tsfm	2310050B20Rik|9430024O13Rik|EF-TS|EF-Tsmt	Ts translation elongation factor, mitochondrial	protein-coding	0.150000	0.726368	
mm_638.1	chr1	40398497	40398697	+	1	NA	NA	NA	-30973	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.000000	0.472637	
mm_113623.1	chr13	41637298	41637498	+	1	NA	NA	NA	-12045	NM_177808	328231	Mm.227476	NM_177808	ENSMUSG00000054258	Gm5082	A030008J09|EG328231	predicted gene 5082	protein-coding	0.010000	0.368159	
mm_25155.1	chr3	103028755	103028955	+	1	NA	NA	NA	8309	NM_144901	229663	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0.005000	0.407960	
mm_138299.1	chr17	34630877	34631077	+	1	NA	NA	NA	1291	NM_030890	260297	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31	proline-rich transmembrane protein 1	protein-coding	0.115000	0.766169	
mm_35501.1	chr4	41048032	41048232	-	1	NA	NA	NA	4	NM_007473	11832	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	0.000000	0.532338	
mm_80099.1	chr9	70298188	70298388	+	1	NA	NA	NA	90938	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.020000	0.537313	
mm_118929.1	chr14	27038972	27039172	+	1	NA	NA	NA	71	NM_134437	171463	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	0.105000	0.696517	
mm_32306.1	chr4	103150952	103151152	+	1	NA	NA	NA	31662	NM_001039081	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.015000	0.452736	
mm_169053.1	chr13	21833404	21833604	-	1	NA	NA	NA	-29	NM_178185	319171	Mm.250564	NM_178185	ENSMUSG00000094777	Hist1h2ap	ENSMUSG00000060262|Gm11276|OTTMUSG00000000448	histone cluster 1, H2ap	protein-coding	0.060000	0.552239	
mm_68509.1	chr7	111082917	111083117	-	1	NA	NA	NA	13	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.070000	0.641791	
mm_23992.1	chr3	86362388	86362588	+	1	NA	NA	NA	137798	NM_001077687	80877	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	0.005000	0.373134	
mm_42103.1	chr5	110514768	110514968	+	1	NA	NA	NA	-55	NR_102290	231603	Mm.22836	NM_173766	ENSMUSG00000048215	A630023P12Rik	-	RIKEN cDNA A630023P12 gene	ncRNA	0.005000	0.527363	
mm_46894.1	chr5	113993788	113993988	-	1	NA	NA	NA	-131	NM_198109	231637	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot homolog 1 (Drosophila)	protein-coding	0.135000	0.796020	
mm_106451.1	chr11	119943248	119943448	-	1	NA	NA	NA	256	NM_130862	108100	Mm.197534	NM_130862	ENSMUSG00000025372	Baiap2	IRSp53|R75030	brain-specific angiogenesis inhibitor 1-associated protein 2	protein-coding	0.135000	0.751244	
mm_156687.1	chrX	159414431	159414631	+	1	NA	NA	NA	-41	NM_001081124	78283	Mm.160079	NM_001081124	ENSMUSG00000041020	Map7d2	1600028E09Rik|2900002G04Rik|5330432J06Rik|C030036K04Rik|Mtap7d2	MAP7 domain containing 2	protein-coding	0.160000	0.786070	
mm_43999.1	chr5	146833175	146833375	+	1	NA	NA	NA	385	NM_019647	19933	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	0.095000	0.676617	
mm_12225.1	chr2	67971155	67971355	+	1	NA	NA	NA	-133417	NM_020283	26877	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	0.015000	0.477612	
mm_224.1	chr1	17601803	17602003	+	1	NA	NA	NA	2	NM_053191	94227	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	0.005000	0.432836	-34(ACATATAAAAGC,-,0.00)
mm_14104.1	chr2	125591549	125591749	+	1	NA	NA	NA	33464	NM_001081091	99100	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	0.010000	0.447761	
mm_52213.1	chr6	103510533	103510733	+	1	NA	NA	NA	-243	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.015000	0.517413	
mm_10854.1	chr2	25051563	25051763	+	1	NA	NA	NA	-2716	NM_001177654	56876	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.030000	0.527363	
mm_113824.1	chr13	46986351	46986551	+	1	NA	NA	NA	28399	NM_175340	105193	Mm.25593	NM_175340	ENSMUSG00000044231	Nhlrc1	AI505271|B230309E09Rik|EPM2B	NHL repeat containing 1	protein-coding	0.015000	0.492537	
mm_26542.1	chr3	146150139	146150339	+	1	NA	NA	NA	65	NM_001005846	68279	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.090000	0.666667	
mm_104783.1	chr11	98584164	98584364	-	1	NA	NA	NA	2981	NM_025661	66612	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	0.005000	0.547264	
mm_26197.1	chr3	138526348	138526548	+	1	NA	NA	NA	27	NR_035481	100316706		NR_035481	ENSMUSG00000088373	Mir1956	mir-1956|mmu-mir-1956	microRNA 1956	ncRNA	0.055000	0.527363	
mm_171997.1	chr6	104385161	104385361	-	1	NA	NA	NA	-107783	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding	0.070000	0.691542	
mm_39843.1	chr5	30889208	30889408	+	1	NA	NA	NA	-26	NM_001294262	231093	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0.050000	0.651741	
mm_149626.1	chr19	17136663	17136863	+	1	NA	NA	NA	180645	NM_181348	353211	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.040000	0.552239	
mm_146417.1	chr18	84589695	84589895	+	1	NA	NA	NA	-291	NM_001033341	240476	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.070000	0.601990	
mm_35398.1	chr4	34614809	34615009	-	1	NA	NA	NA	33	NM_001159563	50793	Mm.399624	NM_015824	ENSMUSG00000040044	Orc3	Orc3l	origin recognition complex, subunit 3	protein-coding	0.125000	0.681592	
mm_155321.1	chrX	62372083	62372283	+	1	NA	NA	NA	85041	NM_001199996	74437	Mm.85792	NM_001199996	ENSMUSG00000045330	4933402E13Rik	-	RIKEN cDNA 4933402E13 gene	protein-coding	0.000000	0.452736	
mm_131474.1	chr16	17070170	17070370	+	1	NA	NA	NA	131	NM_001291047	106369	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee-like 1 (Drosophila)	protein-coding	0.150000	0.746269	
mm_43946.1	chr5	145128000	145128200	+	1	NA	NA	NA	11989	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.010000	0.328358	-85(GCCTTTTAAAGA,-,0.00),-84(CCTTTTAAAGAA,+,0.00)
mm_112106.1	chr12	112785653	112785853	-	1	NA	NA	NA	-23222	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.015000	0.457711	
mm_73163.1	chr8	95013200	95013400	+	1	NA	NA	NA	-4392	NM_173036	54672	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.015000	0.557214	
mm_38199.1	chr4	135494441	135494641	-	1	NA	NA	NA	-37	NM_028995	74552	Mm.26548	NM_028995	ENSMUSG00000028803	Nipal3	9130020G22Rik|AI480660|Npal3	NIPA-like domain containing 3	protein-coding	0.045000	0.572139	
mm_32501.1	chr4	108459825	108460025	+	1	NA	NA	NA	499	NM_175472	230594	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.065000	0.711443	
mm_37040.1	chr4	115647619	115647819	-	1	NA	NA	NA	-14	NM_007823	13120	Mm.1840	NM_007823	ENSMUSG00000028713	Cyp4b1	-	cytochrome P450, family 4, subfamily b, polypeptide 1	protein-coding	0.025000	0.577114	
mm_71168.1	chr8	40546506	40546706	+	1	NA	NA	NA	-30759	NM_001271542	18983	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0.000000	0.298507	
mm_28616.1	chr3	94979797	94979997	-	1	NA	NA	NA	5166	NM_001293716	107650	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase, catalytic, beta polypeptide	protein-coding	0.020000	0.412935	
mm_93661.1	chr10	117693040	117693240	-	1	NA	NA	NA	17618	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.010000	0.407960	24(CTTTTTATGGTA,+,0.00)
mm_123666.1	chr14	69245153	69245353	-	1	NA	NA	NA	39850	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.030000	0.532338	
mm_159355.1	chr3	80801517	80801717	-	1	NA	NA	NA	1174	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.015000	0.477612	
mm_105821.1	chr11	112774258	112774458	-	1	NA	NA	NA	-7852	NM_011448	20682	Mm.286407	NM_011448	ENSMUSG00000000567	Sox9	2010306G03Rik|AV220920|mKIAA4243	SRY (sex determining region Y)-box 9	protein-coding	0.010000	0.497512	
mm_164935.1	chr18	84101834	84102034	+	1	NA	NA	NA	13776	NM_146090	225791	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.010000	0.447761	
mm_38471.1	chr4	140659439	140659639	-	1	NA	NA	NA	6348	NM_001290803	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.000000	0.497512	
mm_113593.1	chr13	40971465	40971665	+	1	NA	NA	NA	-29445	NM_026550	68083	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0.015000	0.467662	
mm_72096.1	chr8	71586403	71586603	+	1	NA	NA	NA	-5681	NM_025396	66171	Mm.282284	NM_025396	ENSMUSG00000031807	Pgls	1110030K05Rik|AI447866|Plgs	6-phosphogluconolactonase	protein-coding	0.015000	0.457711	
mm_36882.1	chr4	107239181	107239381	-	1	NA	NA	NA	14252	NM_029985	77809	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	0.015000	0.402985	
mm_72157.1	chr8	72169189	72169389	+	1	NA	NA	NA	8089	NM_023126	17274	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	0.005000	0.487562	
mm_124262.1	chr14	102978465	102978665	-	1	NA	NA	NA	4067	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.010000	0.422886	
mm_142709.1	chr17	47888086	47888286	-	1	NA	NA	NA	36446	NM_028767	74123	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.025000	0.631841	
mm_72264.1	chr8	75097120	75097320	+	1	NA	NA	NA	3602	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.020000	0.552239	
mm_65788.1	chr7	28893651	28893851	-	1	NA	NA	NA	12095	NM_001110807	60594	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	0.005000	0.527363	
mm_84906.1	chr9	79977445	79977645	-	1	NA	NA	NA	337	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.015000	0.497512	
mm_34819.1	chr4	154960909	154961109	+	1	NA	NA	NA	86	NM_010419	15208	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hairy and enhancer of split 5 (Drosophila)	protein-coding	0.125000	0.706468	
mm_67347.1	chr7	79826818	79827018	-	1	NA	NA	NA	15434	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.030000	0.512438	
mm_170637.1	chr1	98946691	98946891	+	1	NA	NA	NA	525667	NM_027584	70866	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding	0.020000	0.502488	
mm_20707.1	chr2	132945959	132946159	-	1	NA	NA	NA	-23	NM_198029	241639	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0.015000	0.552239	
mm_173344.1	chrY	90812868	90813068	+	1	NA	NA	NA	26438	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.000000	0.502488	
mm_113534.1	chr13	37845769	37845969	+	1	NA	NA	NA	18476	NM_001039188	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.015000	0.502488	
mm_116901.1	chr13	55426675	55426875	-	1	NA	NA	NA	29	NM_021489	58992	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	0.035000	0.577114	
mm_34385.1	chr4	144921364	144921564	+	1	NA	NA	NA	28327	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.010000	0.497512	37(GTCTATAAAATG,-,0.00)
mm_48948.1	chr6	4540435	4540635	+	1	NA	NA	NA	34917	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.020000	0.407960	
mm_157128.1	chrX	9446729	9446929	-	1	NA	NA	NA	22495	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.467662	
mm_134624.1	chr16	21650008	21650208	-	1	NA	NA	NA	44557	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.000000	0.368159	
mm_60260.1	chr7	43811223	43811423	+	1	NA	NA	NA	29	NM_011872	23993	Mm.251227	NM_011872	ENSMUSG00000030713	Klk7	Prss6|SCCE	kallikrein related-peptidase 7 (chymotryptic, stratum corneum)	protein-coding	0.015000	0.592040	89(AGGTATAAAAGG,-,0.00)
mm_167573.1	chr9	44275449	44275649	-	1	NA	NA	NA	-6950	NM_001163742	270151	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	0.030000	0.537313	
mm_169730.1	chr15	81399640	81399840	-	1	NA	NA	NA	-46	NM_133726	70356	Mm.180337	NM_133726	ENSMUSG00000022403	St13	1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48	suppression of tumorigenicity 13	protein-coding	0.075000	0.666667	
mm_144342.1	chr18	15011152	15011352	+	1	NA	NA	NA	22257	NR_045372	74456	Mm.391075	NR_045372		4933424G05Rik	-	RIKEN cDNA 4933424G05 gene	ncRNA	0.055000	0.572139	
mm_104336.1	chr11	94052358	94052558	-	1	NA	NA	NA	8253	NM_001025429	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.000000	0.477612	-7(TTTTTTAAAGGC,+,0.00)
mm_131987.1	chr16	25042156	25042356	+	1	NA	NA	NA	-17383	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.005000	0.452736	
mm_145733.1	chr18	64264980	64265180	+	1	NA	NA	NA	10721	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.050000	0.542289	
mm_138834.1	chr17	39848323	39848523	+	1	NA	NA	NA	5426	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.120000	0.691542	
mm_149349.1	chr19	10895149	10895349	+	1	NA	NA	NA	18	NM_001253843	28000	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	0.100000	0.641791	
mm_110685.1	chr12	67209422	67209622	-	1	NA	NA	NA	13027	NM_001193266	320772	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	0.005000	0.353234	
mm_36533.1	chr4	86633063	86633263	-	1	NA	NA	NA	-21141	NM_173400	230376	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	0.030000	0.582090	
mm_68137.1	chr7	102239539	102239739	-	1	NA	NA	NA	10479	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.035000	0.592040	
mm_12394.1	chr2	70039187	70039387	+	1	NA	NA	NA	161	NM_177376	329421	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0.035000	0.572139	
mm_116981.1	chr13	56289250	56289450	-	1	NA	NA	NA	7201	NM_019568	57266	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding	0.025000	0.577114	
mm_75032.1	chr8	32009404	32009604	-	1	NA	NA	NA	-91301	NM_178591	211323	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding	0.095000	0.671642	
mm_136503.1	chr16	96443571	96443771	-	1	NA	NA	NA	-57	NM_008405	16415	Mm.12872	NM_008405	ENSMUSG00000000157	Itgb2l	5033406G21Rik|pactolus	integrin beta 2-like	protein-coding	0.010000	0.547264	
mm_10619.1	chr2	19371563	19371763	+	1	NA	NA	NA	27	NM_029619	76467	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	0.075000	0.681592	
mm_52323.1	chr6	108836547	108836747	+	1	NA	NA	NA	8006	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.015000	0.452736	19(CCTTTTATGGTC,+,0.00)
mm_148804.1	chr19	6268957	6269157	+	1	NA	NA	NA	4213	NR_029720	387187		NR_029720	ENSMUSG00000065523	Mir192	Mirn192|mir-192|mmu-mir-192	microRNA 192	ncRNA	0.015000	0.512438	
mm_173100.1	chrX	152690066	152690266	+	1	NA	NA	NA	-45618	NM_001290685	110380	Mm.40796	NM_172441	ENSMUSG00000045180	Shroom2	4832440C16|Apxl|C630003H05Rik|Shrm2	shroom family member 2	protein-coding	0.010000	0.462687	
mm_137446.1	chr17	26532783	26532983	+	1	NA	NA	NA	-24411	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.010000	0.482587	
mm_74610.1	chr8	12478041	12478241	-	1	NA	NA	NA	82622	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.070000	0.512438	
mm_112870.1	chr13	20852634	20852834	+	1	NA	NA	NA	58621	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.398010	
mm_7834.1	chr1	132139553	132139753	-	1	NA	NA	NA	32	NM_008795	18557	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.040000	0.606965	
mm_148270.1	chr18	81924654	81924854	-	1	NA	NA	NA	67326	NR_039589	100628596		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.010000	0.577114	
mm_54669.1	chr6	39207091	39207291	-	1	NA	NA	NA	-418	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.085000	0.656716	
mm_121984.1	chr14	26414548	26414748	-	1	NA	NA	NA	57101	NR_038005	71106	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.010000	0.273632	
mm_58212.1	chr6	144099726	144099926	-	1	NA	NA	NA	109742	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.005000	0.452736	
mm_75136.1	chr8	35208350	35208550	-	1	NA	NA	NA	-167291	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.015000	0.467662	
mm_101426.1	chr11	29742814	29743014	-	1	NA	NA	NA	24351	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.005000	0.338308	-95(CTTTCTAAAAGC,-,0.00)
mm_4501.1	chr1	173673809	173674009	+	1	NA	NA	NA	229	NM_001162938	100033459	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|Pydc3|Pyr-rv1	interferon activated gene 208	protein-coding	0.005000	0.487562	
mm_126732.1	chr15	85646003	85646203	+	1	NA	NA	NA	-57670	NR_110483	102800312	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0.080000	0.621891	
mm_157782.1	chrX	73806116	73806316	-	1	NA	NA	NA	18753	NM_001029868	245469	Mm.103782	NM_001029868	ENSMUSG00000002006	Pdzd4	B230341P03|D130075J17Rik|Kiaa1444-hp|LU1|PDZRN4L|Pdzk4|Pdzrnk4l|Xlu	PDZ domain containing 4	protein-coding	0.000000	0.398010	-31(CACTCTAAAAGA,-,0.00)
mm_168521.1	chr11	58214910	58215110	+	1	NA	NA	NA	33	NM_019440	54396	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	0.020000	0.601990	
mm_27402.1	chr3	51277277	51277477	-	1	NA	NA	NA	137	NM_001291062	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.130000	0.711443	
mm_38316.1	chr4	137279099	137279299	-	1	NA	NA	NA	1564	NM_009523	22417	Mm.20355	NM_009523	ENSMUSG00000036856	Wnt4	Wnt-4	wingless-type MMTV integration site family, member 4	protein-coding	0.010000	0.477612	
mm_142055.1	chr17	35643592	35643792	-	1	NA	NA	NA	3	NM_001033366	268949	Mm.296301	NM_001033366	ENSMUSG00000073408	Dpcr1	Gm630	diffuse panbronchiolitis critical region 1 (human)	protein-coding	0.015000	0.542289	-35(CCCCTTATAAGA,-,0.00)
mm_130962.1	chr15	103314910	103315110	-	1	NA	NA	NA	-4572	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.040000	0.661692	
mm_40419.1	chr5	53388852	53389052	+	1	NA	NA	NA	121846	NM_001145433	66278	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.000000	0.417910	
mm_107696.1	chr12	55398826	55399026	+	1	NA	NA	NA	101	NM_011968	26443	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.055000	0.582090	
mm_108413.1	chr12	81860113	81860313	+	1	NA	NA	NA	183	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog (Drosophila)	protein-coding	0.145000	0.766169	
mm_110207.1	chr12	27342304	27342504	-	1	NA	NA	NA	314	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.105000	0.731343	
mm_22713.1	chr3	19188120	19188320	+	1	NA	NA	NA	-1	NM_026182	67472	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.070000	0.686567	
mm_66621.1	chr7	45474848	45475048	-	1	NA	NA	NA	-8050	NM_007527	12028	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.020000	0.417910	
mm_106903.1	chr12	8015227	8015427	+	1	NA	NA	NA	37650	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.452736	
mm_76712.1	chr8	94666868	94667068	-	1	NA	NA	NA	-123	NM_024269	107566	Mm.393247	NM_024191	ENSMUSG00000031776	Arl2bp	1700010P10Rik|1700027H16Rik|6330544B05Rik|AI482273|AI849834|BART|Bart1	ADP-ribosylation factor-like 2 binding protein	protein-coding	0.090000	0.621891	
mm_98429.1	chr11	94677505	94677705	+	1	NA	NA	NA	-112	NM_145828	217119	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	0.060000	0.606965	
mm_33605.1	chr4	132580567	132580767	+	1	NA	NA	NA	16600	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.005000	0.482587	
mm_91928.1	chr10	60358124	60358324	-	1	NA	NA	NA	11373	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.025000	0.557214	
mm_11794.1	chr2	43366079	43366279	+	1	NA	NA	NA	-189146	NM_001289593	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.000000	0.388060	
mm_155667.1	chrX	88959084	88959284	+	1	NA	NA	NA	-199631	NR_037313	100499530		NR_037313	ENSMUSG00000084559	Mir1906-2	mmu-mir-1906-2	microRNA 1906-2	ncRNA	0.020000	0.383085	
mm_114904.1	chr13	94817603	94817803	+	1	NA	NA	NA	28760	NM_009321	21371	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0.025000	0.432836	
mm_172224.1	chr6	66766016	66766216	+	1	NA	NA	NA	11014	NM_134168	171186	Mm.377167	NM_134168	ENSMUSG00000093632	Vmn1r38	V1rc13	vomeronasal 1 receptor 38	protein-coding	0.030000	0.482587	
mm_169174.1	chr13	65699115	65699315	-	1	NA	NA	NA	-414238	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.025000	0.537313	
mm_147975.1	chr18	67401499	67401699	-	1	NA	NA	NA	10868	NM_026473	67951	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	0.065000	0.577114	
mm_16715.1	chr2	7125558	7125758	-	1	NA	NA	NA	-44356	NM_001160292	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.000000	0.393035	28(TCTTTAAAGGTC,+,0.00)
mm_57920.1	chr6	133864899	133865099	-	1	NA	NA	NA	-11332	NM_010594	16483	Mm.13052	NM_010594	ENSMUSG00000032758	Kap	AW146435|FKSG22	kidney androgen regulated protein	protein-coding	0.030000	0.517413	
mm_103042.1	chr11	69795809	69796009	-	1	NA	NA	NA	28	NM_009601	11443	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	0.070000	0.661692	
mm_150808.1	chr19	44376776	44376976	+	1	NA	NA	NA	30833	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.000000	0.437811	
mm_3109.1	chr1	134540754	134540954	+	1	NA	NA	NA	8828	NM_001145300	71001	Mm.158529	NM_183292	ENSMUSG00000046367	Mgat4e	4931440L10Rik	MGAT4 family, member E	protein-coding	0.020000	0.547264	
mm_93935.1	chr10	127180481	127180681	-	1	NA	NA	NA	64	NM_177615	216441	Mm.248373	NM_177615	ENSMUSG00000040441	Slc26a10	C78409|D630010I07	solute carrier family 26, member 10	protein-coding	0.020000	0.547264	-70(CTTTATAGAGGC,+,0.00),-35(GGGTATTTAAGA,-,0.00)
mm_98524.1	chr11	94990678	94990878	+	1	NA	NA	NA	-434	NM_172261	217124	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.035000	0.582090	
mm_87778.1	chr10	60295856	60296056	+	1	NA	NA	NA	11495	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.040000	0.542289	
mm_38484.1	chr4	140750478	140750678	-	1	NA	NA	NA	-7935	NM_153106	242726	Mm.271661	NM_153106	ENSMUSG00000040935	Padi6	Pad6|Padi5|ePAD	peptidyl arginine deiminase, type VI	protein-coding	0.050000	0.631841	
mm_34655.1	chr4	150854973	150855173	+	1	NA	NA	NA	-18	NM_133753	74155	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.165000	0.701493	
mm_68367.1	chr7	107209148	107209348	-	1	NA	NA	NA	-197	NM_029660	76572	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	0.070000	0.597015	
mm_28011.1	chr3	83043302	83043502	-	1	NA	NA	NA	6461	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.025000	0.517413	
mm_58484.1	chr7	3620017	3620217	+	1	NA	NA	NA	2744	NM_025348	66091	Mm.17851	NM_025348	ENSMUSG00000035674	Ndufa3	1010001M12Rik|1700022J01Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3	protein-coding	0.010000	0.482587	
mm_119790.1	chr14	54192662	54192862	+	1	NA	NA	NA	61167	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.432836	
mm_70960.1	chr8	26979844	26980044	+	1	NA	NA	NA	2608	NM_001110508	353310	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.060000	0.661692	
mm_62960.1	chr7	119760826	119761026	+	1	NA	NA	NA	3	NM_212442	20216	Mm.334199	NM_016870	ENSMUSG00000030935	Acsm3	Sa|Sah	acyl-CoA synthetase medium-chain family member 3	protein-coding	0.025000	0.477612	
mm_151312.1	chr19	55832652	55832852	+	1	NA	NA	NA	-62569	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.010000	0.383085	
mm_23166.1	chr3	40745211	40745411	+	1	NA	NA	NA	-302	NM_011020	18415	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0.140000	0.786070	
mm_71785.1	chr8	66697169	66697369	+	1	NA	NA	NA	-153	NM_010934	18166	Mm.5112	NM_010934	ENSMUSG00000036437	Npy1r	Npyr|Y1-R	neuropeptide Y receptor Y1	protein-coding	0.040000	0.532338	
mm_71699.1	chr8	61713487	61713687	+	1	NA	NA	NA	46511	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.025000	0.422886	-32(TCCTATAAAGGC,+,0.00),-32(TCCTATAAAGGC,-,0.00),-6(TAGTTTAAAAGA,-,0.00)
mm_40364.1	chr5	48372292	48372492	+	1	NA	NA	NA	0	NM_025755	66768	Mm.29409	NM_025755	ENSMUSG00000029089	Pacrgl	4933428G09Rik	PARK2 co-regulated-like	protein-coding	0.105000	0.631841	
mm_140163.1	chr17	80224442	80224642	+	1	NA	NA	NA	53	NM_026053	67242	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem (nuclear organelle) associated protein 6	protein-coding	0.075000	0.597015	
mm_99035.1	chr11	98960360	98960560	+	1	NA	NA	NA	-11	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.105000	0.751244	
mm_151086.1	chr19	47625339	47625539	+	1	NA	NA	NA	45420	NM_001164639	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0.035000	0.492537	79(GCTTTTAAAATG,+,0.00)
mm_40546.1	chr5	58042696	58042896	+	1	NA	NA	NA	324715	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.010000	0.437811	
mm_42396.1	chr5	114937771	114937971	+	1	NA	NA	NA	-4331	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.015000	0.512438	
mm_11835.1	chr2	45110890	45111090	+	1	NA	NA	NA	-148	NR_110572	433424	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|OTTMUSG00000012358|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0.030000	0.407960	
mm_120347.1	chr14	63819648	63819848	+	1	NA	NA	NA	-40564	NM_028228	72400	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	0.050000	0.562189	
mm_161850.1	chr18	13846845	13847045	-	1	NA	NA	NA	125788	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.030000	0.557214	
mm_18024.1	chr2	38613663	38613863	-	1	NA	NA	NA	30143	NM_011187	19177	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0.010000	0.447761	
mm_113944.1	chr13	49814647	49814847	+	1	NA	NA	NA	132617	NM_172015	105148	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	0.005000	0.502488	
mm_4332.1	chr1	171854805	171855005	+	1	NA	NA	NA	15208	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.000000	0.353234	-59(GACTCTAAAGGC,-,0.00)
mm_124155.1	chr14	93224819	93225019	-	1	NA	NA	NA	663969	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.368159	
mm_90301.1	chr10	125972283	125972483	+	1	NA	NA	NA	6164	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0.005000	0.338308	0(GCATTTATAGGA,+,0.00)
mm_66300.1	chr7	38184422	38184622	-	1	NA	NA	NA	735	NM_028166	72244	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0.005000	0.462687	
mm_101005.1	chr11	8477047	8477247	-	1	NA	NA	NA	187388	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.005000	0.383085	
mm_24551.1	chr3	93442280	93442480	+	1	NA	NA	NA	50	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.005000	0.348259	
mm_111042.1	chr12	79296188	79296388	-	1	NA	NA	NA	-6	NM_001008550	211978	Mm.297919	NM_001008550	ENSMUSG00000066440	Zfyve26	4930465A13|9330197E15Rik|A630028O16Rik|Gm893|mKIAA0321	zinc finger, FYVE domain containing 26	protein-coding	0.065000	0.557214	
mm_120746.1	chr14	73237898	73238098	+	1	NA	NA	NA	107	NM_175116	67168	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.015000	0.477612	
mm_153575.1	chr19	43247959	43248159	-	1	NA	NA	NA	140296	NM_001081257	545291	Mm.442200	NM_001081257	ENSMUSG00000074852	Hpse2	Gm968|Hpa2	heparanase 2	protein-coding	0.000000	0.313433	
mm_89910.1	chr10	111174194	111174394	+	1	NA	NA	NA	9492	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.005000	0.412935	
mm_75577.1	chr8	61289229	61289429	-	1	NA	NA	NA	-457	NR_045475	69279	Mm.417857	NR_045475	ENSMUSG00000099419	1700001D01Rik	-	RIKEN cDNA 1700001D01 gene	ncRNA	0.010000	0.437811	
mm_67240.1	chr7	75308853	75309053	-	1	NA	NA	NA	251	NR_045814	68954	Mm.46960	NR_045812	ENSMUSG00000097247	1500012K07Rik	-	RIKEN cDNA 1500012K07 gene	ncRNA	0.105000	0.666667	
mm_60482.1	chr7	44478315	44478515	+	1	NA	NA	NA	-6102	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.477612	
mm_20600.1	chr2	131352745	131352945	-	1	NA	NA	NA	47	NM_178607	51902	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	0.145000	0.771144	
mm_172348.1	chr7	113491382	113491582	-	1	NA	NA	NA	-22352	NM_001285831	67420	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.035000	0.472637	
mm_165247.1	chr2	69789543	69789743	+	1	NA	NA	NA	-94	NM_028521	73373	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	0.100000	0.641791	
mm_30757.1	chr4	15266038	15266238	+	1	NA	NA	NA	318	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.165000	0.825871	
mm_52635.1	chr6	117174393	117174593	+	1	NA	NA	NA	5958	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.015000	0.353234	
mm_4452.1	chr1	172697955	172698155	+	1	NA	NA	NA	-1	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding	0.015000	0.492537	
mm_141160.1	chr17	26508373	26508573	-	1	NA	NA	NA	-1	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.105000	0.666667	
mm_141411.1	chr17	29403252	29403452	-	1	NA	NA	NA	42438	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.005000	0.442786	
mm_170238.1	chr1	78955219	78955419	+	1	NA	NA	NA	138370	NM_021342	57814	Mm.24386	NM_021342	ENSMUSG00000047330	Kcne4	AW487937|MiRP3	potassium voltage-gated channel, Isk-related subfamily, gene 4	protein-coding	0.055000	0.621891	
mm_38541.1	chr4	141595848	141596048	-	1	NA	NA	NA	3976	NM_001163256	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.035000	0.552239	
mm_90524.1	chr10	128068117	128068317	+	1	NA	NA	NA	9235	NM_019766	56351	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3 (cytosolic)	protein-coding	0.005000	0.358209	
mm_8874.1	chr1	162859889	162860089	-	1	NA	NA	NA	11	NM_001330291	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.015000	0.582090	
mm_38580.1	chr4	141818976	141819176	-	1	NA	NA	NA	6929	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.035000	0.606965	
mm_99292.1	chr11	101330715	101330915	+	1	NA	NA	NA	209	NM_009675	11754	Mm.67281	NM_009675	ENSMUSG00000019326	Aoc3	SSAO|VAP1	amine oxidase, copper containing 3	protein-coding	0.015000	0.557214	
mm_38138.1	chr4	134750194	134750394	-	1	NA	NA	NA	17710	NM_145554	100017	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.020000	0.572139	
mm_132462.1	chr16	36206297	36206497	+	1	NA	NA	NA	-4006	NM_001082542	408196	Mm.432544	NM_001082542	ENSMUSG00000094733	Gm5416	EG408196|Stfna1l1	predicted gene 5416	protein-coding	0.010000	0.422886	
mm_96736.1	chr11	69765899	69766099	+	1	NA	NA	NA	87	NM_029348	75580	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0.130000	0.815920	
mm_68650.1	chr7	118491791	118491991	-	1	NA	NA	NA	84	NM_001033380	319622	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	0.070000	0.686567	
mm_59687.1	chr7	28443001	28443201	+	1	NA	NA	NA	2164	NM_001039192	63986	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.005000	0.417910	
mm_129972.1	chr15	85811144	85811344	-	1	NA	NA	NA	453	NM_001164626	72355	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	0.085000	0.562189	
mm_117498.1	chr13	78199745	78199945	-	1	NA	NA	NA	-972	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.020000	0.348259	
mm_152600.1	chr19	11690942	11691142	-	1	NA	NA	NA	9	NM_133353	170834	Mm.24754	NM_133353	ENSMUSG00000041857	Oosp1	AA536827	oocyte secreted protein 1	protein-coding	0.015000	0.507463	
mm_52480.1	chr6	114315318	114315518	+	1	NA	NA	NA	32783	NM_178703	232333	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.010000	0.592040	
mm_35707.1	chr4	44167943	44168143	-	1	NA	NA	NA	240	NM_001038993	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.130000	0.751244	
mm_130006.1	chr15	86221944	86222144	-	1	NA	NA	NA	7585	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.030000	0.522388	-33(TTCTATAAAAAC,-,0.00)
mm_60540.1	chr7	44480386	44480586	+	1	NA	NA	NA	-4031	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.467662	
mm_93957.1	chr10	127266936	127267136	-	1	NA	NA	NA	774	NM_001190453	69654	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	0.025000	0.577114	
mm_98318.1	chr11	90249395	90249595	+	1	NA	NA	NA	19	NM_026178	67468	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.100000	0.805970	
mm_50720.1	chr6	52229876	52230076	+	1	NA	NA	NA	189	NR_029912	723820		NR_029912	ENSMUSG00000065443	Mir196b	Mirn196b|mir-196b	microRNA 196b	ncRNA	0.065000	0.671642	
mm_85804.1	chr9	110210016	110210216	-	1	NA	NA	NA	-33667	NM_013884	29873	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding	0.040000	0.437811	
mm_30624.1	chr4	8731899	8732099	+	1	NA	NA	NA	41593	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.000000	0.363184	-62(TCTTATAAAGAA,+,0.00)
mm_56580.1	chr6	106791527	106791727	-	1	NA	NA	NA	8460	NM_021449	58799	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.020000	0.452736	
mm_104615.1	chr11	97280338	97280538	-	1	NA	NA	NA	138	NM_008942	19155	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0.120000	0.786070	
mm_26274.1	chr3	142505329	142505529	+	1	NA	NA	NA	8495	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.030000	0.502488	
mm_63593.1	chr7	128139054	128139254	+	1	NA	NA	NA	9586	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.000000	0.412935	
mm_13562.1	chr2	112265734	112265934	+	1	NA	NA	NA	-480	NM_133649	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.140000	0.741294	
mm_140788.1	chr17	18968890	18969090	-	1	NA	NA	NA	54668	NM_001104549	627367	Mm.384131	NM_001104549	ENSMUSG00000091491	Vmn2r97	EG627367|Vn2r97	vomeronasal 2, receptor 97	protein-coding	0.030000	0.512438	
mm_18156.1	chr2	45092390	45092590	-	1	NA	NA	NA	17787	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.020000	0.462687	
mm_24989.1	chr3	97032343	97032543	+	1	NA	NA	NA	41	NM_008121	14613	Mm.281816	NM_008121	ENSMUSG00000057123	Gja5	5730555N10Rik|Cnx40|Cx40|Gja-5	gap junction protein, alpha 5	protein-coding	0.010000	0.522388	58(AACTTTAAAAGC,-,0.00)
mm_137144.1	chr17	23660401	23660601	+	1	NA	NA	NA	-5	NM_153784	212733	Mm.59997	NM_153784	ENSMUSG00000043782	Ccdc64b	BICDR-2|Bicdl2	coiled-coil domain containing 64B	protein-coding	0.050000	0.666667	
mm_33535.1	chr4	130932407	130932607	+	1	NA	NA	NA	-11878	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.005000	0.417910	9(CCATTTATACAT,+,0.00)
mm_12946.1	chr2	87506462	87506662	+	1	NA	NA	NA	-1896	NM_178249	347711	Mm.21815	NM_178249	ENSMUSG00000025838	Pramel6	C80453|C80515	preferentially expressed antigen in melanoma like 6	protein-coding	0.020000	0.447761	
mm_123969.1	chr14	75130547	75130747	-	1	NA	NA	NA	236	NM_027581	70859	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	0.075000	0.641791	
mm_151082.1	chr19	47620284	47620484	+	1	NA	NA	NA	40365	NM_001164639	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0.020000	0.606965	
mm_44240.1	chr5	5314487	5314687	-	1	NA	NA	NA	-48519	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.015000	0.482587	
mm_161109.1	chr12	103863463	103863663	-	1	NA	NA	NA	56	NM_001252569	20700	Mm.439692	NM_009243	ENSMUSG00000066366	Serpina1a	Aat-2|Aat2|Dom1|PI1|Spi1-1|Spi1-3	serine (or cysteine) peptidase inhibitor, clade A, member 1A	protein-coding	0.005000	0.502488	-30(GCTTAAATACAG,+,0.00)
mm_109501.1	chr12	111451974	111452174	+	1	NA	NA	NA	9413	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.010000	0.497512	
mm_15094.1	chr2	153291332	153291532	+	1	NA	NA	NA	16	NM_008444	16569	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0.115000	0.661692	
mm_144731.1	chr18	35553490	35553690	+	1	NA	NA	NA	180	NR_038073	100503380	Mm.482118	NR_038073	ENSMUSG00000097769	Snhg4	Gm17457	small nucleolar RNA host gene 4	ncRNA	0.030000	0.492537	
mm_105054.1	chr11	100703624	100703824	-	1	NA	NA	NA	547	NM_030150	80861	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0.015000	0.557214	
mm_164562.1	chr17	17832366	17832566	+	1	NA	NA	NA	1491	NM_001162909	75202	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0.005000	0.437811	
mm_159235.1	chr2	144332002	144332202	-	1	NA	NA	NA	-22	NM_026924	107586	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0.080000	0.567164	
mm_19188.1	chr2	84416528	84416728	-	1	NA	NA	NA	8638	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.010000	0.412935	
mm_28535.1	chr3	92720252	92720452	-	1	NA	NA	NA	-2	NM_026394	67828	Mm.158176	NM_026394	ENSMUSG00000042124	Lce1f	1110055J05Rik	late cornified envelope 1F	protein-coding	0.005000	0.507463	
mm_54873.1	chr6	42601756	42601956	-	1	NA	NA	NA	-4484	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.000000	0.422886	
mm_140860.1	chr17	23740275	23740475	-	1	NA	NA	NA	-45	NM_023824	76498	Mm.491253	NM_023824	ENSMUSG00000023909	Paqr4	1500004C10Rik	progestin and adipoQ receptor family member IV	protein-coding	0.120000	0.726368	
mm_52860.1	chr6	122294055	122294255	+	1	NA	NA	NA	-11322	NM_016970	50928	Mm.20434	NM_016970	ENSMUSG00000030114	Klrg1	2F1-Ag|MAFA|MAFA-L	killer cell lectin-like receptor subfamily G, member 1	protein-coding	0.000000	0.437811	
mm_97845.1	chr11	83065293	83065493	+	1	NA	NA	NA	281	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.000000	0.477612	
mm_29043.1	chr3	103020241	103020441	-	1	NA	NA	NA	-205	NM_001310693	229663	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0.070000	0.542289	
mm_73263.1	chr8	104340681	104340881	+	1	NA	NA	NA	187	NM_024217	68119	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.090000	0.701493	
mm_27604.1	chr3	59153510	59153710	-	1	NA	NA	NA	18	NR_045641	320463	Mm.484506	NR_045641	ENSMUSG00000036381	F630111L10Rik	-	RIKEN cDNA F630111L10 gene	ncRNA	0.015000	0.497512	
mm_127555.1	chr15	102150496	102150696	+	1	NA	NA	NA	21	NM_146064	223920	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	0.020000	0.542289	
mm_153651.1	chr19	44388446	44388646	-	1	NA	NA	NA	19163	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.070000	0.631841	86(CCTTTTAGGTAG,+,0.00)
mm_56895.1	chr6	119121038	119121238	-	1	NA	NA	NA	-12643	NM_001256002	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.000000	0.398010	
mm_9432.1	chr1	172506774	172506974	-	1	NA	NA	NA	6628	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.000000	0.537313	
mm_11906.1	chr2	50909483	50909683	+	1	NA	NA	NA	-101	NR_033595	227885	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	OTTMUSG00000012426	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.015000	0.432836	-62(TCCCATTAATGG,-,0.00),-60(CCATTAATGGGA,+,0.00)
mm_72177.1	chr8	72319452	72319652	+	1	NA	NA	NA	490	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.095000	0.686567	
mm_95089.1	chr11	33534659	33534859	+	1	NA	NA	NA	-21013	NM_023146	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.010000	0.517413	
mm_112076.1	chr12	112632990	112633190	-	1	NA	NA	NA	-11738	NM_001161737	30954	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.015000	0.547264	
mm_47558.1	chr5	124395941	124396141	-	1	NA	NA	NA	29873	NM_001081203	243272	Mm.23879	NM_001081203	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch homolog 1 (Drosophila)	protein-coding	0.010000	0.383085	
mm_18267.1	chr2	52319569	52319769	-	1	NA	NA	NA	19129	NM_010889	17996	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	0.010000	0.467662	
mm_81607.1	chr9	110663592	110663792	+	1	NA	NA	NA	7189	NM_028312	72654	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.015000	0.532338	-33(GCTTTAATGCCC,+,0.00)
mm_170342.1	chr18	48046609	48046809	+	1	NA	NA	NA	1374	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.055000	0.522388	
mm_154783.1	chrX	13041928	13042128	+	1	NA	NA	NA	13	NR_038158	70489	Mm.383563	NR_038158	ENSMUSG00000087424	5730405O15Rik	-	RIKEN cDNA 5730405O15 gene	ncRNA	0.050000	0.641791	
mm_20483.1	chr2	129699743	129699943	-	1	NA	NA	NA	95	NM_018863	18610	Mm.6239	NM_018863	ENSMUSG00000027400	Pdyn	Dyn	prodynorphin	protein-coding	0.030000	0.572139	-35(ATCTATAAAAGG,-,0.00)
mm_17106.1	chr2	24049268	24049468	-	1	NA	NA	NA	11	NM_080462	140483	Mm.33120	NM_080462	ENSMUSG00000026986	Hnmt	1500031F01Rik|AI788969	histamine N-methyltransferase	protein-coding	0.015000	0.373134	
mm_21954.1	chr2	167188531	167188731	-	1	NA	NA	NA	187	NM_008420	16500	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	0.125000	0.771144	
mm_125213.1	chr15	34082648	34082848	+	1	NA	NA	NA	29	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.150000	0.766169	
mm_62026.1	chr7	91672286	91672486	+	1	NA	NA	NA	-390008	NM_001243046	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.010000	0.487562	
mm_94728.1	chr11	20740568	20740768	+	1	NA	NA	NA	888	NM_001290545	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.040000	0.497512	
mm_52706.1	chr6	119388780	119388980	+	1	NA	NA	NA	28603	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.075000	0.606965	
mm_171941.1	chr5	69946119	69946319	+	1	NA	NA	NA	-353915	NM_001347363	67980	Mm.33830	NM_027681	ENSMUSG00000029209	Gnpda2	4921523I18Rik|4933412A11Rik|BB189630|GNPDA|Gnp2|Sb52|mKIAA4008	glucosamine-6-phosphate deaminase 2	protein-coding	0.015000	0.462687	
mm_11531.1	chr2	32628340	32628540	+	1	NA	NA	NA	50	NM_001198792	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.005000	0.572139	
mm_44108.1	chr5	149368396	149368596	+	1	NA	NA	NA	-43310	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.025000	0.517413	-40(GTCCCTAAAGGC,-,0.00)
mm_116928.1	chr13	55647610	55647810	-	1	NA	NA	NA	12711	NM_001282055	212880	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	0.040000	0.487562	
mm_143124.1	chr17	57211585	57211785	-	1	NA	NA	NA	5543	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.040000	0.592040	
mm_74806.1	chr8	22593872	22594072	-	1	NA	NA	NA	-159	NM_011696	22335	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	0.125000	0.726368	
mm_73339.1	chr8	105323345	105323545	+	1	NA	NA	NA	2831	NM_177449	234684	Mm.381717	NM_177449	ENSMUSG00000041679	Lrrc29	A630024J02Rik|FBL9|FBXL9	leucine rich repeat containing 29	protein-coding	0.005000	0.502488	
mm_95222.1	chr11	44399963	44400163	+	1	NA	NA	NA	0	NM_001303244	16160	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.010000	0.492537	-33(GAGTATATAAGC,-,0.00)
mm_148733.1	chr19	5878501	5878701	+	1	NA	NA	NA	135	NM_134154	107375	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0.025000	0.577114	
mm_27371.1	chr3	50438919	50439119	-	1	NA	NA	NA	4594	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.398010	
mm_154570.1	chrX	6778381	6778581	+	1	NA	NA	NA	-95003	NM_177914	331374	Mm.392752	NM_177914	ENSMUSG00000062393	Dgkk	Gm360	diacylglycerol kinase kappa	protein-coding	0.070000	0.621891	
mm_103147.1	chr11	70322370	70322570	-	1	NA	NA	NA	48	NM_145684	11685	Mm.274093	NM_145684	ENSMUSG00000018907	Alox12e	8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1	arachidonate lipoxygenase, epidermal	protein-coding	0.035000	0.567164	
mm_108812.1	chr12	95692129	95692329	+	1	NA	NA	NA	3	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.025000	0.517413	
mm_10061.1	chr1	193370144	193370344	-	1	NA	NA	NA	38	NM_144817	215303	Mm.40329	NM_144817	ENSMUSG00000016179	Camk1g	CLICK-III|CaMKIgamma	calcium/calmodulin-dependent protein kinase I gamma	protein-coding	0.000000	0.512438	-99(TCCCCTTTAAGG,-,0.00),-98(CCCCTTTAAGGC,-,0.00),-97(CCCTTTAAGGCT,+,0.00),-96(CCTTTAAGGCTG,+,0.00)
mm_55239.1	chr6	52260730	52260930	-	1	NA	NA	NA	50	NM_008264	15398	Mm.377086	NM_008264		Hoxa13	Hd|Hox-1.10	homeobox A13	protein-coding	0.120000	0.746269	8(GGCTTTTTAAAA,-,0.00)
mm_53542.1	chr6	136809497	136809697	+	1	NA	NA	NA	1349	NM_177688	232440	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	0.025000	0.427861	
mm_105215.1	chr11	102167111	102167311	-	1	NA	NA	NA	-10804	NM_029649	76547	Mm.46529	NM_029649	ENSMUSG00000020921	Tmem101	2610511E22Rik	transmembrane protein 101	protein-coding	0.015000	0.507463	
mm_114484.1	chr13	69612143	69612343	+	1	NA	NA	NA	227	NM_145354	28114	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	0.115000	0.681592	
mm_102968.1	chr11	69666014	69666214	-	1	NA	NA	NA	56	NM_001291058	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.010000	0.492537	
mm_155564.1	chrX	75668010	75668210	+	1	NA	NA	NA	-89879	NM_175122	67790	Mm.45148	NM_175122	ENSMUSG00000031202	Rab39b	6330580M05Rik	RAB39B, member RAS oncogene family	protein-coding	0.015000	0.348259	
mm_137849.1	chr17	31067196	31067396	+	1	NA	NA	NA	9602	NM_009593	11307	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding	0.025000	0.582090	
mm_133155.1	chr16	70321174	70321374	+	1	NA	NA	NA	7325	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.000000	0.447761	
mm_20213.1	chr2	125624994	125625194	-	1	NA	NA	NA	19	NM_001081091	99100	Mm.330545	NM_001081091	ENSMUSG00000068394	Cep152	AI851464|mKIAA0912	centrosomal protein 152	protein-coding	0.125000	0.726368	
mm_172104.1	chr6	31804293	31804493	-	1	NA	NA	NA	-240456	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	0.025000	0.477612	
mm_144899.1	chr18	37186596	37186796	+	1	NA	NA	NA	42727	NM_001003672	353237	Mm.308500	NM_001003672	ENSMUSG00000102697	Pcdhac2	CNRc2	protocadherin alpha subfamily C, 2	protein-coding	0.000000	0.333333	
mm_120792.1	chr14	74733559	74733759	+	1	NA	NA	NA	1362	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.000000	0.412935	
mm_161400.1	chr14	119138154	119138354	+	1	NA	NA	NA	-11	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.140000	0.761194	
mm_92752.1	chr10	81025309	81025509	-	1	NA	NA	NA	-32	NM_145217	208666	Mm.44995	NM_145217	ENSMUSG00000043670	Diras1	Di-Ras1|Gbts1|RIG	DIRAS family, GTP-binding RAS-like 1	protein-coding	0.125000	0.805970	
mm_52466.1	chr6	113702197	113702397	+	1	NA	NA	NA	-4911	NR_106009	102465631		NR_106009	ENSMUSG00000106581	Mir7042	mmu-mir-7042	microRNA 7042	ncRNA	0.000000	0.542289	
mm_37141.1	chr4	116990270	116990470	-	1	NA	NA	NA	4043	NM_009478	22275	Mm.46484	NM_009478	ENSMUSG00000028684	Urod	AI323803|UPD|Uro-d	uroporphyrinogen decarboxylase	protein-coding	0.030000	0.517413	
mm_40681.1	chr5	65539960	65540160	+	1	NA	NA	NA	2815	NM_001310619	53323	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.005000	0.363184	
mm_783.1	chr1	45311531	45311731	+	1	NA	NA	NA	93	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.020000	0.522388	-33(TCCTATTTAAGG,-,0.00),-31(CTATTTAAGGCC,+,0.00)
mm_515.1	chr1	37409520	37409720	+	1	NA	NA	NA	20483	NM_198006	76178	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	0.000000	0.343284	4(CCTTTTAGAAAC,+,0.00)
mm_161185.1	chr13	49078033	49078233	-	1	NA	NA	NA	70195	NM_029361	75607	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.010000	0.616915	
mm_127728.1	chr15	103252921	103253121	+	1	NA	NA	NA	131	NM_001302343	18022	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.005000	0.462687	
mm_2481.1	chr1	105980999	105981199	+	1	NA	NA	NA	-9307	NM_001122676	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.000000	0.417910	
mm_48587.1	chr5	143732399	143732599	-	1	NA	NA	NA	-219	NM_029749	76800	Mm.259620	NM_029749	ENSMUSG00000051306	Usp42	2410140K03Rik|3110031A07Rik|A630018G05Rik|D5Ertd591e	ubiquitin specific peptidase 42	protein-coding	0.135000	0.736318	
mm_94181.1	chr10	128922924	128923124	-	1	NA	NA	NA	500	NM_015740	14533	Mm.30118	NM_015740	ENSMUSG00000090247	Bloc1s1	AI839753|BLOS1|Gcn5l1	biogenesis of lysosomal organelles complex-1, subunit 1	protein-coding	0.030000	0.572139	
mm_146141.1	chr18	74740029	74740229	+	1	NA	NA	NA	38326	NR_028560	100217466		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	0.000000	0.522388	-57(GTCCATAAAGGC,-,0.00)
mm_14633.1	chr2	136781365	136781565	+	1	NA	NA	NA	68015	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.010000	0.378109	
mm_49019.1	chr6	4758827	4759027	+	1	NA	NA	NA	11621	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.402985	
mm_154804.1	chrX	13302161	13302361	+	1	NA	NA	NA	21239	NM_010028	13205	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	0.015000	0.407960	
mm_1373.1	chr1	66468300	66468500	+	1	NA	NA	NA	-47	NM_175510	329178	Mm.44798	NM_175510	ENSMUSG00000055567	Unc80	C030018G13Rik|C230061B10Rik|UNC-80	unc-80, NALCN activator	protein-coding	0.115000	0.741294	
mm_117751.1	chr13	95912461	95912661	-	1	NA	NA	NA	-20639	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.005000	0.517413	
mm_72851.1	chr8	88320695	88320895	+	1	NA	NA	NA	26591	NM_001037724	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.015000	0.512438	
mm_97250.1	chr11	75754767	75754967	+	1	NA	NA	NA	21980	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.000000	0.368159	
mm_13859.1	chr2	119711390	119711590	+	1	NA	NA	NA	-30847	NM_146125	228550	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	0.010000	0.542289	
mm_14939.1	chr2	151558711	151558911	+	1	NA	NA	NA	-13812	NM_145535	228765	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0.000000	0.378109	
mm_169931.1	chr16	57606651	57606851	-	1	NA	NA	NA	116	NM_025599	66497	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	0.105000	0.646766	
mm_149892.1	chr19	25406923	25407123	+	1	NA	NA	NA	-98683	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.055000	0.676617	
mm_71878.1	chr8	69808607	69808807	+	1	NA	NA	NA	20	NM_198101	78816	Mm.324305	NM_198101	ENSMUSG00000036246	Gmip	5031419I10Rik	Gem-interacting protein	protein-coding	0.100000	0.696517	
mm_25000.1	chr3	97651658	97651858	+	1	NA	NA	NA	-6454	NM_182997	108097	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.035000	0.537313	
mm_11547.1	chr2	32680183	32680383	+	1	NA	NA	NA	7483	NR_106168	102465885		NR_106168	ENSMUSG00000098972	Mir8093	Gm27548|mmu-mir-8093	microRNA 8093	ncRNA	0.015000	0.597015	
mm_31892.1	chr4	82692659	82692859	+	1	NA	NA	NA	166902	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0.025000	0.492537	
mm_74437.1	chr8	3754634	3754834	-	1	NA	NA	NA	-5750	NM_133238	170786	Mm.32510	NM_133238	ENSMUSG00000031494	Cd209a	CD209|CDSIGN|CIRE|DC-SIGN|DC-SIGN1|Dcsign|SIGN-R1|SIGNR5	CD209a antigen	protein-coding	0.020000	0.467662	
mm_164727.1	chr17	57839144	57839344	-	1	NA	NA	NA	69674	NM_001081653	620292	Mm.391030	NM_001081653	ENSMUSG00000038048	Cntnap5c	Caspr5-3|EG620292|Gm325	contactin associated protein-like 5C	protein-coding	0.020000	0.487562	
mm_153573.1	chr19	42779861	42780061	-	1	NA	NA	NA	15	NM_001346703	192236	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	Hermansky-Pudlak syndrome 1	protein-coding	0.100000	0.686567	
mm_47569.1	chr5	124478190	124478390	-	1	NA	NA	NA	-55	NM_030259	80291	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.075000	0.646766	
mm_132190.1	chr16	32430997	32431197	+	1	NA	NA	NA	77	NM_001163159	13026	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	0.040000	0.611940	
mm_6965.1	chr1	86124355	86124555	-	1	NA	NA	NA	-12485	NM_008311	15559	Mm.439747	NM_008311	ENSMUSG00000026228	Htr2b	5-HT2B|AJ012488|AV377389	5-hydroxytryptamine (serotonin) receptor 2B	protein-coding	0.005000	0.333333	-66(GTCCTTAAAAAG,-,0.00),-64(CCTTAAAAAGAG,+,0.00),-33(ACCTATAAAGGG,-,0.00)
mm_87470.1	chr10	51491526	51491726	+	1	NA	NA	NA	728	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.452736	-85(CTGTATAAAGAG,-,0.00)
mm_69775.1	chr7	141016852	141017052	-	1	NA	NA	NA	-60	NM_001033632	213002	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.010000	0.507463	11(TTCTATAAAAGT,-,0.00)
mm_151290.1	chr19	55316192	55316392	+	1	NA	NA	NA	235	NM_001293686	53611	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.070000	0.582090	
mm_34757.1	chr4	152338730	152338930	+	1	NA	NA	NA	179	NM_001081376	269610	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding	0.135000	0.781095	
mm_1646.1	chr1	74601453	74601653	+	1	NA	NA	NA	98	NM_175031	269209	Mm.310974	NM_175031	ENSMUSG00000033276	Stk36	1700112N14Rik|B930045J24|FU|Fused|mKIAA1278	serine/threonine kinase 36	protein-coding	0.030000	0.492537	
mm_150273.1	chr19	34243365	34243565	+	1	NA	NA	NA	11908	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.015000	0.487562	
mm_159420.1	chr3	107239465	107239665	-	1	NA	NA	NA	142	NM_001044382	246691	Mm.490697	NM_001044382	ENSMUSG00000070368	Prok1	EG-VEGF	prokineticin 1	protein-coding	0.030000	0.497512	
mm_2151.1	chr1	88165921	88166121	+	1	NA	NA	NA	9	NM_201643	394433	Mm.300095	NM_201643	ENSMUSG00000089943	Ugt1a5	-	UDP glucuronosyltransferase 1 family, polypeptide A5	protein-coding	0.020000	0.522388	
mm_19582.1	chr2	101772948	101773148	-	1	NA	NA	NA	24659	NM_175181	72446	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0.000000	0.442786	
mm_74358.1	chr8	128358525	128358725	+	1	NA	NA	NA	-448	NM_008737	18186	Mm.271745	NM_008737	ENSMUSG00000025810	Nrp1	C530029I03|NP-1|NPN-1|Npn1|Nrp	neuropilin 1	protein-coding	0.065000	0.606965	
mm_145767.1	chr18	65023618	65023818	+	1	NA	NA	NA	191	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.020000	0.577114	
mm_90774.1	chr10	5922227	5922427	-	1	NA	NA	NA	73	NM_001161822	56533	Mm.44606	NM_019958	ENSMUSG00000019775	Rgs17	6430507P11Rik|Rgsz2	regulator of G-protein signaling 17	protein-coding	0.075000	0.686567	
mm_84518.1	chr9	67043630	67043830	-	1	NA	NA	NA	141	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.110000	0.716418	
mm_76154.1	chr8	82356072	82356272	-	1	NA	NA	NA	46414	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.005000	0.378109	
mm_113722.1	chr13	43785050	43785250	+	1	NA	NA	NA	38	NM_001289915	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.130000	0.746269	
mm_118784.1	chr14	24100069	24100269	+	1	NA	NA	NA	11292	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.000000	0.422886	
mm_71151.1	chr8	39636065	39636265	+	1	NA	NA	NA	6513	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.020000	0.412935	-82(CCCTTTTAATGC,-,0.00),-80(CTTTTAATGCAC,+,0.00)
mm_143500.1	chr17	71526688	71526888	-	1	NA	NA	NA	69	NM_023294	67052	Mm.225956	NM_023294	ENSMUSG00000024056	Ndc80	2610020P18Rik|AV139730|HEC|HEC1|Kntc2	NDC80 kinetochore complex component	protein-coding	0.115000	0.592040	
mm_34039.1	chr4	138205985	138206185	+	1	NA	NA	NA	-10527	NM_001122896	15441	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	0.040000	0.482587	
mm_112772.1	chr13	19623073	19623273	+	1	NA	NA	NA	-2	NM_016687	20379	Mm.42095	NM_016687	ENSMUSG00000021319	Sfrp4	-	secreted frizzled-related protein 4	protein-coding	0.095000	0.691542	
mm_155661.1	chrX	86770372	86770572	+	1	NA	NA	NA	-415478	NR_036689	245502	Mm.490821	NR_036689		Gm41	-	melanoma antigen, family B, 4 pseudogene	pseudo	0.015000	0.388060	
mm_36357.1	chr4	75982677	75982877	-	1	NA	NA	NA	-704491	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.005000	0.412935	
mm_67043.1	chr7	67255201	67255401	-	1	NA	NA	NA	32685	NM_001191051	75099	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.000000	0.358209	32(CTTTAAATAGTC,+,0.00)
mm_135780.1	chr16	56885884	56886084	-	1	NA	NA	NA	179	NM_019631	56277	Mm.262328	NM_019631	ENSMUSG00000022754	Tmem45a	C630002M10Rik|M32486|p19.5	transmembrane protein 45a	protein-coding	0.025000	0.492537	
mm_100370.1	chr11	119089233	119089433	+	1	NA	NA	NA	-3096	NM_007625	12418	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.035000	0.592040	-33(ACCTTTATAAGA,-,0.00)
mm_86987.1	chr10	25489489	25489689	+	1	NA	NA	NA	46683	NM_001195596	100504474	Mm.46323	NM_001195596	ENSMUSG00000096546	Smlr1	2010003K15Rik	small leucine-rich protein 1	protein-coding	0.000000	0.343284	
mm_48893.1	chr5	151428080	151428280	-	1	NA	NA	NA	21676	NR_131166	100042166	Mm.443286	NR_131166	ENSMUSG00000097321	Gm3704	-	predicted gene 3704	ncRNA	0.010000	0.512438	
mm_144619.1	chr18	32837246	32837446	+	1	NA	NA	NA	-59	NR_045381	75795	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	0.120000	0.691542	
mm_13380.1	chr2	103838824	103839024	+	1	NA	NA	NA	-28302	NR_040514	78031	Mm.243867	NR_040514	ENSMUSG00000086687	4930547E08Rik	-	RIKEN cDNA 4930547E08 gene	ncRNA	0.040000	0.467662	
mm_128134.1	chr15	31453402	31453602	-	1	NA	NA	NA	187	NM_145852	252967	Mm.436668	NM_145852	ENSMUSG00000022236	Ropn1l	ASP|AV047578|Akapasp	ropporin 1-like	protein-coding	0.100000	0.691542	
mm_54234.1	chr6	28238712	28238912	-	1	NA	NA	NA	22789	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.010000	0.318408	82(TGCTTTAAAAGT,-,0.00),83(GCTTTAAAAGTA,+,0.00)
mm_160819.1	chr11	29693423	29693623	+	1	NA	NA	NA	-251	NM_194051	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.155000	0.805970	
mm_119416.1	chr14	45219660	45219860	+	1	NA	NA	NA	43	NM_027518	70713	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	0.115000	0.716418	
mm_62548.1	chr7	102441592	102441792	+	1	NA	NA	NA	-3	NM_009103	20133	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.070000	0.572139	
mm_116516.1	chr13	45712907	45713107	-	1	NA	NA	NA	205563	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.010000	0.358209	
mm_161189.1	chr13	50467207	50467407	+	1	NA	NA	NA	0	NM_001033400	328250	Mm.315205	NM_001033400	ENSMUSG00000071909	Nutm2	Fam22|Gm806	NUT family member 2	protein-coding	0.010000	0.497512	
mm_138744.1	chr17	37002514	37002714	+	1	NA	NA	NA	89	NM_001013745	22715	Mm.305561	NM_009559	ENSMUSG00000036036	Zfp57	G19|Zfp-57	zinc finger protein 57	protein-coding	0.065000	0.582090	
mm_48190.1	chr5	137529011	137529211	-	1	NA	NA	NA	483	NR_105846	102465227		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0.040000	0.587065	
mm_137259.1	chr17	24632592	24632792	+	1	NA	NA	NA	10	NM_008743	18207	Mm.148315	NM_008743	ENSMUSG00000041429	Nthl1	Nth1|Octs3	nth (endonuclease III)-like 1 (E.coli)	protein-coding	0.090000	0.631841	
mm_146253.1	chr18	77781750	77781950	+	1	NA	NA	NA	8082	NM_007505	11946	Mm.276137	NM_007505	ENSMUSG00000025428	Atp5a1	AI035633|AL022851|AL023067|Atpm|D18Ertd206e|Mom2	ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	protein-coding	0.015000	0.432836	
mm_130396.1	chr15	97975608	97975808	-	1	NA	NA	NA	11479	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.025000	0.472637	
mm_125073.1	chr15	25984235	25984435	+	1	NA	NA	NA	-31	NM_144523	52521	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.065000	0.582090	
mm_124153.1	chr14	93202039	93202239	-	1	NA	NA	NA	686749	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.358209	
mm_134668.1	chr16	22261660	22261860	-	1	NA	NA	NA	4245	NM_001330554	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding	0.005000	0.333333	
mm_114298.1	chr13	59357654	59357854	+	1	NA	NA	NA	186697	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.015000	0.567164	
mm_126019.1	chr15	76671568	76671768	+	1	NA	NA	NA	-12	NM_033371	73062	Mm.322901	NM_033371	ENSMUSG00000033819	Ppp1r16a	2900084E10Rik|Mypt3|R75527	protein phosphatase 1, regulatory (inhibitor) subunit 16A	protein-coding	0.115000	0.746269	
mm_151596.1	chr19	3441171	3441371	-	1	NA	NA	NA	-26727	NM_010253	14419	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	0.040000	0.532338	
mm_18921.1	chr2	76742187	76742387	-	1	NA	NA	NA	66972	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.020000	0.457711	
mm_76462.1	chr8	85365226	85365426	-	1	NA	NA	NA	-2	NM_175441	213435	Mm.32804	NM_175441	ENSMUSG00000031698	Mylk3	D830007F02Rik|MLCK	myosin light chain kinase 3	protein-coding	0.020000	0.567164	
mm_62764.1	chr7	112226670	112226870	+	1	NA	NA	NA	934	NM_001193305	320878	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0.035000	0.552239	
mm_29945.1	chr3	132948340	132948540	-	1	NA	NA	NA	1374	NM_001287103	114249	Mm.279310	NM_033525	ENSMUSG00000040998	Npnt	1110009H02Rik|AA682063|AI314031|Nctn|POEM	nephronectin	protein-coding	0.020000	0.487562	
mm_119983.1	chr14	55575761	55575961	+	1	NA	NA	NA	187	NM_026808	68680	Mm.36758	NM_026808	ENSMUSG00000022215	Fitm1	1110028A07Rik|AV010547|Cg10671|Fit1	fat storage-inducing transmembrane protein 1	protein-coding	0.045000	0.562189	
mm_75572.1	chr8	60954658	60954858	-	1	NA	NA	NA	41	NM_173876	12725	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0.010000	0.462687	
mm_154909.1	chrX	21360778	21360978	+	1	NA	NA	NA	13	NR_045668	331392	Mm.23126	NM_198633	ENSMUSG00000051537	Gm5124	EG331392	nucleolar and coiled-body phosphoprotein 1 pseudogene	pseudo	0.105000	0.597015	
mm_14623.1	chr2	136773843	136774043	+	1	NA	NA	NA	60493	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.015000	0.517413	
mm_55126.1	chr6	50574323	50574523	-	1	NA	NA	NA	2025	NR_105790	102465193		NR_105790	ENSMUSG00000099221	Mir6371	Gm27376|mmu-mir-6371	microRNA 6371	ncRNA	0.015000	0.437811	-76(TGCCTTAAAAAC,-,0.00),-74(CCTTAAAAACTC,+,0.00)
mm_82992.1	chr9	36541794	36541994	-	1	NA	NA	NA	69	NM_001033783	434396	Mm.118836	NM_001033783	ENSMUSG00000074448	Gm5615	EG434396|Pate-H|Pate9	predicted gene 5615	protein-coding	0.020000	0.427861	-37(AGCTCTATAAAG,-,0.00),-35(CTCTATAAAGAG,+,0.00),-35(CTCTATAAAGAG,-,0.00)
mm_108190.1	chr12	76742577	76742777	+	1	NA	NA	NA	-22896	NM_206534	211151	Mm.80970	NM_206534	ENSMUSG00000090258	Churc1	1700030P15Rik|My015|chch	churchill domain containing 1	protein-coding	0.000000	0.432836	
mm_140183.1	chr17	80995995	80996195	+	1	NA	NA	NA	51463	NM_026516	68027	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0.000000	0.358209	
mm_138846.1	chr17	40561405	40561605	+	1	NA	NA	NA	-2	NM_001177529	433107	Mm.353122	NM_001177529	ENSMUSG00000092043	Esp6	EG433107|Esp5|Gm5494	exocrine gland secreted peptide 6	protein-coding	0.015000	0.452736	-31(CCATTTAAAGGA,+,0.00)
mm_28477.1	chr3	92123848	92124048	-	1	NA	NA	NA	-1	NM_175424	109314	Mm.440617	NM_175424	ENSMUSG00000056270	Prr9	A030004J04Rik	proline rich 9	protein-coding	0.015000	0.477612	-32(CTGTATAAAAGT,-,0.00)
mm_1047.1	chr1	58796230	58796430	+	1	NA	NA	NA	956	NM_009812	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.015000	0.547264	
mm_23186.1	chr3	40949866	40950066	+	1	NA	NA	NA	-665	NM_001040399	214048	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0.200000	0.815920	
mm_78701.1	chr9	41326981	41327181	+	1	NA	NA	NA	-49445	NR_040725	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.015000	0.482587	
mm_13747.1	chr2	118120737	118120937	+	1	NA	NA	NA	8961	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.005000	0.482587	-83(CTTTTAATACTG,+,0.00)
mm_161807.1	chr17	61020521	61020721	+	1	NA	NA	NA	1860696	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.040000	0.507463	
mm_21318.1	chr2	157099075	157099275	-	1	NA	NA	NA	12120	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.010000	0.417910	
mm_57638.1	chr6	128362577	128362777	-	1	NA	NA	NA	145	NM_001326583	72440	Mm.143908	NM_197981	ENSMUSG00000048668	Rhno1	2510047L19Rik|5930416I19Rik	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding	0.100000	0.721393	
mm_84893.1	chr9	79793294	79793494	-	1	NA	NA	NA	36	NM_133718	69981	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	0.095000	0.691542	
mm_128899.1	chr15	73296581	73296781	-	1	NA	NA	NA	-41799	NR_029561	387169		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA	0.025000	0.482587	
mm_145069.1	chr18	42052381	42052581	+	1	NA	NA	NA	-1229	NM_172966	269016	Mm.45472	NM_172966	ENSMUSG00000057719	Sh3rf2	2310046K19|9130023G24Rik|AI452083|Ppp1r39|RNF158	SH3 domain containing ring finger 2	protein-coding	0.005000	0.542289	
mm_13725.1	chr2	117421558	117421758	+	1	NA	NA	NA	-78781	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.010000	0.442786	
mm_63854.1	chr7	135667347	135667547	+	1	NA	NA	NA	-15133	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.015000	0.487562	-30(CCCTTTATAAAA,-,0.00),-28(CTTTATAAAAGA,-,0.00)
mm_99112.1	chr11	100140492	100140692	+	1	NA	NA	NA	3107	NM_001313963	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.025000	0.452736	
mm_2142.1	chr1	88094971	88095171	+	1	NA	NA	NA	70	NM_201642	394432	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	0.010000	0.517413	
mm_107409.1	chr12	33928305	33928505	+	1	NA	NA	NA	-20	NM_033522	114712	Mm.204643	NM_033522	ENSMUSG00000046518	Ferd3l	Mnato3|N-twist|Nato|Nato3|Ntwist|Ptfb|bHLHa31|fer3	Fer3-like (Drosophila)	protein-coding	0.035000	0.497512	
mm_103569.1	chr11	77893709	77893909	-	1	NA	NA	NA	63	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding	0.010000	0.527363	
mm_154328.1	chrM	2759	2959	+	1	NA	NA	NA	NA	NA									0.035000	0.378109	
mm_53342.1	chr6	129267996	129268196	+	1	NA	NA	NA	7273	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.005000	0.447761	
mm_59017.1	chr7	19258416	19258616	+	1	NA	NA	NA	13338	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.005000	0.482587	
mm_113855.1	chr13	47228403	47228603	+	1	NA	NA	NA	34500	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.035000	0.467662	
mm_134001.1	chr16	4789818	4790018	-	1	NA	NA	NA	17	NM_025670	66626	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0.070000	0.651741	
mm_116521.1	chr13	45789086	45789286	-	1	NA	NA	NA	175805	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.005000	0.388060	
mm_16307.1	chr2	174289868	174290068	+	1	NA	NA	NA	5468	NR_002846	56802	Mm.125770	NR_002846	ENSMUSG00000086537	Nespas	Gnas-as|Nespos	neuroendocrine secretory protein antisense	ncRNA	0.000000	0.437811	
mm_35099.1	chr4	8913588	8913788	-	1	NA	NA	NA	223282	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.015000	0.457711	87(CCATTTATATAG,+,0.00)
mm_101103.1	chr11	11931702	11931902	-	1	NA	NA	NA	-33658	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.015000	0.378109	
mm_157576.1	chrX	52614123	52614323	-	1	NA	NA	NA	-249	NM_016697	14734	Mm.22515	NM_016697	ENSMUSG00000055653	Gpc3	OCI-5	glypican 3	protein-coding	0.055000	0.631841	
mm_78045.1	chr9	14501803	14502003	+	1	NA	NA	NA	1284	NM_023153	66070	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	0.005000	0.388060	
mm_58866.1	chr7	16944583	16944783	+	1	NA	NA	NA	1	NM_001099636	434128	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	0.105000	0.681592	
mm_77433.1	chr8	121544224	121544424	-	1	NA	NA	NA	-64	NR_045903	72259	Mm.396206	NR_045903	ENSMUSG00000097424	1700030M09Rik	-	RIKEN cDNA 1700030M09 gene	ncRNA	0.015000	0.587065	
mm_120909.1	chr14	76114737	76114937	+	1	NA	NA	NA	3946	NM_013745	27275	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.015000	0.492537	
mm_169323.1	chr14	115042154	115042354	+	1	NA	NA	NA	-1417	NR_029785	723905		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0.115000	0.741294	
mm_146342.1	chr18	82475206	82475406	+	1	NA	NA	NA	183	NM_001025245	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.080000	0.686567	
mm_149441.1	chr19	11480244	11480444	+	1	NA	NA	NA	10976	NM_028595	73656	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.005000	0.492537	
mm_89569.1	chr10	95456398	95456598	+	1	NA	NA	NA	39123	NR_045338	70523	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	0.000000	0.452736	
mm_155794.1	chrX	98937403	98937603	+	1	NA	NA	NA	-278	NM_207633	77929	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	0.060000	0.597015	
mm_35574.1	chr4	41723054	41723254	-	1	NA	NA	NA	9	NM_001159565	53598	Mm.29025	NM_016890	ENSMUSG00000028447	Dctn3	p24	dynactin 3	protein-coding	0.085000	0.626866	
mm_34343.1	chr4	144403648	144403848	+	1	NA	NA	NA	4716	NM_029948	77632	Mm.31283	NM_029948	ENSMUSG00000028591	Pramef12	4930569K13Rik|AU023001|C86578	PRAME family member 12	protein-coding	0.015000	0.606965	-34(CAGTATAAAAGG,-,0.00)
mm_38846.1	chr4	149247167	149247367	-	1	NA	NA	NA	60431	NM_207682	16561	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0.015000	0.497512	
mm_58808.1	chr7	16315504	16315704	+	1	NA	NA	NA	6021	NM_133234	170770	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.005000	0.462687	-7(TTTTTTAAACAC,+,0.00)
mm_69053.1	chr7	126875968	126876168	-	1	NA	NA	NA	8899	NM_001163775	381921	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	0.010000	0.517413	
mm_61528.1	chr7	78920034	78920234	+	1	NA	NA	NA	5899	NM_001113527	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.020000	0.547264	
mm_166208.1	chr5	45493279	45493479	+	1	NA	NA	NA	5	NM_024434	66988	Mm.286830	NM_024434	ENSMUSG00000039682	Lap3	2410015L10Rik|AA410100|LAP-3|Lap|Lapep|Pep-7|Pep-S|Pep7|Peps	leucine aminopeptidase 3	protein-coding	0.125000	0.736318	
mm_50246.1	chr6	42355865	42356065	+	1	NA	NA	NA	6137	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.020000	0.557214	
mm_17629.1	chr2	31036658	31036858	-	1	NA	NA	NA	54479	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.005000	0.507463	
mm_32357.1	chr4	105157378	105157578	+	1	NA	NA	NA	131	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.085000	0.666667	
mm_138695.1	chr17	35980024	35980224	+	1	NA	NA	NA	169	NM_008136	14670	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	0.130000	0.786070	
mm_60721.1	chr7	45335939	45336139	+	1	NA	NA	NA	770	NM_010473	15464	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.015000	0.527363	
mm_65436.1	chr7	25384855	25385055	-	1	NA	NA	NA	5157	NM_001039507	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.015000	0.587065	
mm_138622.1	chr17	35835548	35835748	+	1	NA	NA	NA	2653	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.070000	0.572139	
mm_24705.1	chr3	95160377	95160577	+	1	NA	NA	NA	57	NR_073551	20360	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	0.120000	0.711443	
mm_26461.1	chr3	143017160	143017360	+	1	NA	NA	NA	-135256	NM_178654	109333	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	0.020000	0.462687	
mm_88154.1	chr10	69572582	69572782	+	1	NA	NA	NA	38974	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.015000	0.552239	
mm_155218.1	chrX	56792573	56792773	+	1	NA	NA	NA	6146	NM_001287800	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.025000	0.432836	
mm_56540.1	chr6	99712071	99712271	-	1	NA	NA	NA	14221	NM_001037539	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.005000	0.333333	
mm_5685.1	chr1	43170468	43170668	-	1	NA	NA	NA	-6607	NM_010212	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.005000	0.343284	
mm_129294.1	chr15	77245499	77245699	-	1	NA	NA	NA	61454	NM_001110827	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.010000	0.522388	
mm_714.1	chr1	42693998	42694198	+	1	NA	NA	NA	727	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.060000	0.552239	
mm_151445.1	chr19	57508490	57508690	+	1	NA	NA	NA	26	NR_040306	78073	Mm.12411	NR_040306		6720468P15Rik	-	RIKEN cDNA 6720468P15 gene	ncRNA	0.020000	0.552239	
mm_3322.1	chr1	137918677	137918877	+	1	NA	NA	NA	-47678	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.005000	0.368159	-72(GCATATAAACAC,+,0.00)
mm_108382.1	chr12	80878223	80878423	+	1	NA	NA	NA	46124	NR_033786	67340	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.015000	0.527363	
mm_120618.1	chr14	70431911	70432111	+	1	NA	NA	NA	-2917	NM_021308	57746	Mm.85253	NM_021308	ENSMUSG00000033644	Piwil2	Piwil1l|mili	piwi-like RNA-mediated gene silencing 2	protein-coding	0.010000	0.393035	
mm_143158.1	chr17	57223860	57224060	-	1	NA	NA	NA	4176	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.025000	0.557214	
mm_14566.1	chr2	135061228	135061428	+	1	NA	NA	NA	154288	NR_040517	78805	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA	0.005000	0.353234	
mm_60876.1	chr7	46050560	46050760	+	1	NA	NA	NA	16964	NM_153057	211548	Mm.274811	NM_153057	ENSMUSG00000030835	Nomo1	D7Ertd156e|Nomo|pM5	nodal modulator 1	protein-coding	0.040000	0.542289	
mm_110014.1	chr12	16610876	16611076	-	1	NA	NA	NA	-21206	NM_172950	14245	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188	lipin 1	protein-coding	0.005000	0.547264	
mm_80413.1	chr9	77784202	77784402	+	1	NA	NA	NA	29767	NM_010295	14629	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.015000	0.388060	
mm_21562.1	chr2	164182617	164182817	-	1	NA	NA	NA	25	NM_145369	209232	Mm.218273	NM_145369	ENSMUSG00000040154	Wfdc5	BC019734|Prg5|Wap1	WAP four-disulfide core domain 5	protein-coding	0.010000	0.567164	
mm_22948.1	chr3	32364298	32364498	+	1	NA	NA	NA	-1091	NR_027966	67576	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	0.020000	0.542289	
mm_74740.1	chr8	18846069	18846269	-	1	NA	NA	NA	-110	NM_026792	52123	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	0.080000	0.601990	
mm_119870.1	chr14	54681000	54681200	+	1	NA	NA	NA	-5071	NM_021437	58248	Mm.197509	NM_021437	ENSMUSG00000040822	1700123O20Rik	MNCb-2990	RIKEN cDNA 1700123O20 gene	protein-coding	0.005000	0.437811	-20(CTATATTAAAGG,-,0.00)
mm_59047.1	chr7	19361094	19361294	+	1	NA	NA	NA	-22	NM_001010836	333654	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0.095000	0.691542	
mm_145094.1	chr18	43207550	43207750	+	1	NA	NA	NA	-47	NM_178749	269019	Mm.150401	NM_178749	ENSMUSG00000039954	Stk32a	A930015B13Rik|YANK1	serine/threonine kinase 32A	protein-coding	0.095000	0.721393	
mm_98875.1	chr11	97799677	97799877	+	1	NA	NA	NA	105	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.095000	0.641791	
mm_54093.1	chr6	16836775	16836975	-	1	NA	NA	NA	61566	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.000000	0.447761	
mm_164026.1	chr14	76556760	76556960	-	1	NA	NA	NA	29	NR_027699	72661	Mm.320384	NM_001160326	ENSMUSG00000052584	Serp2	2810032E02Rik	stress-associated endoplasmic reticulum protein family member 2	protein-coding	0.125000	0.741294	
mm_40518.1	chr5	57843255	57843455	+	1	NA	NA	NA	125274	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.000000	0.358209	
mm_131461.1	chr16	16983358	16983558	+	1	NA	NA	NA	76	NM_001038663	26413	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	0.110000	0.661692	
mm_117833.1	chr13	98535805	98536005	-	1	NA	NA	NA	-100840	NR_045498	70090	Mm.410857	NR_045498	ENSMUSG00000099446	2310005E17Rik	-	RIKEN cDNA 2310005E17 gene	ncRNA	0.015000	0.532338	
mm_45941.1	chr5	90243915	90244115	-	1	NA	NA	NA	-20019	NM_001163456	231430	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	0.020000	0.532338	
mm_88207.1	chr10	70190332	70190532	+	1	NA	NA	NA	-14232	NM_001304739	69563	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Mln	myoregulin	protein-coding	0.030000	0.517413	
mm_56762.1	chr6	116109758	116109958	-	1	NA	NA	NA	83516	NM_177412	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.000000	0.278607	30(CTTTTTAAACTA,+,0.00)
mm_67368.1	chr7	79840848	79841048	-	1	NA	NA	NA	1404	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.020000	0.512438	
mm_105281.1	chr11	102433876	102434076	-	1	NA	NA	NA	3654	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.010000	0.517413	
mm_20728.1	chr2	136891019	136891219	-	1	NA	NA	NA	-99	NM_028201	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.065000	0.656716	
mm_145631.1	chr18	61110312	61110512	+	1	NA	NA	NA	4840	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.040000	0.517413	
mm_88391.1	chr10	76481014	76481214	+	1	NA	NA	NA	-12000	NM_172550	216119	Mm.344778	NM_172550	ENSMUSG00000033126	Ybey	1110068N23Rik|A130042E20Rik|C21orf57|ORF57|ORF66	ybeY metallopeptidase	protein-coding	0.030000	0.487562	82(GACTTTTAAAAA,-,0.00)
mm_59986.1	chr7	30553168	30553368	+	1	NA	NA	NA	-34	NM_001012401	243912	Mm.34885	NM_001012401	ENSMUSG00000036854	Hspb6	AA387366|Gm479|Hsp20	heat shock protein, alpha-crystallin-related, B6	protein-coding	0.045000	0.572139	
mm_129646.1	chr15	80576521	80576721	-	1	NA	NA	NA	4024	NM_001289442	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.020000	0.472637	
mm_55930.1	chr6	84588208	84588408	-	1	NA	NA	NA	5502	NM_175475	232174	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.030000	0.492537	41(CCGCCTAAAGGG,-,0.00)
mm_57574.1	chr6	127148633	127148833	-	1	NA	NA	NA	-656	NR_040274	77558	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.030000	0.557214	
mm_147460.1	chr18	46597365	46597565	-	1	NA	NA	NA	70	NM_025698	66676	Mm.296043	NM_025698	ENSMUSG00000033184	Tmed7	3930401E15Rik|5830493P14Rik|AU044611|AW545765|TRAM	transmembrane p24 trafficking protein 7	protein-coding	0.135000	0.731343	
mm_92439.1	chr10	77370149	77370349	-	1	NA	NA	NA	48024	NM_130895	110532	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0.015000	0.427861	
mm_62255.1	chr7	99269022	99269222	+	1	NA	NA	NA	776	NM_001043355	17760	Mm.154087	NM_010837	ENSMUSG00000055407	Map6	2810411E12Rik|Map-6|Mtap6|STOP	microtubule-associated protein 6	protein-coding	0.100000	0.701493	
mm_136582.1	chr17	4794592	4794792	+	1	NA	NA	NA	159712	NR_130984	75117	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA	0.000000	0.502488	23(GCCCATTAATGC,-,0.00)
mm_139207.1	chr17	47703076	47703276	+	1	NA	NA	NA	-1180	NR_045913	100126242	Mm.392746	NR_045912	ENSMUSG00000086930	Frs3os	4930417B13Rik|Gm14873|OTTMUSG00000018358	fibroblast growth factor receptor substrate 3, opposite strand	ncRNA	0.040000	0.661692	
mm_117200.1	chr13	64066016	64066216	-	1	NA	NA	NA	23085	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.005000	0.472637	
mm_50513.1	chr6	49038241	49038441	+	1	NA	NA	NA	1823	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.000000	0.427861	
mm_18063.1	chr2	42058745	42058945	-	1	NA	NA	NA	388723	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.005000	0.353234	
mm_2053.1	chr1	87404893	87405093	+	1	NA	NA	NA	-10264	NM_001110227	100040591	Mm.443539	NM_001110227	ENSMUSG00000079436	Kcnj13	-	potassium inwardly-rectifying channel, subfamily J, member 13	protein-coding	0.005000	0.417910	
mm_6717.1	chr1	82317548	82317748	-	1	NA	NA	NA	1069	NM_029777	76867	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	0.035000	0.393035	
mm_147244.1	chr18	38350017	38350217	-	1	NA	NA	NA	-11124	NM_011937	26384	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.025000	0.482587	
mm_88201.1	chr10	70110204	70110404	+	1	NA	NA	NA	13183	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.015000	0.562189	
mm_14461.1	chr2	131210320	131210520	+	1	NA	NA	NA	60	NR_110992	69596	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0.060000	0.582090	
mm_110893.1	chr12	75596070	75596270	-	1	NA	NA	NA	30	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.105000	0.681592	
mm_7047.1	chr1	87126703	87126903	-	1	NA	NA	NA	1795	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.015000	0.467662	
mm_27847.1	chr3	79156528	79156728	-	1	NA	NA	NA	-10753	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.308458	
mm_59043.1	chr7	19345505	19345705	+	1	NA	NA	NA	534	NM_007948	13870	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.035000	0.577114	
mm_116373.1	chr13	40738141	40738341	-	1	NA	NA	NA	-3321	NM_001301674	21418	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.075000	0.547264	
mm_155513.1	chrX	74177160	74177360	+	1	NA	NA	NA	1	NM_031379	83553	Mm.25057	NM_031379	ENSMUSG00000031397	Tktl1	C79967	transketolase-like 1	protein-coding	0.060000	0.601990	
mm_107772.1	chr12	59133708	59133908	+	1	NA	NA	NA	2355	NM_001165253	338320	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.030000	0.502488	
mm_155376.1	chrX	71575677	71575877	+	1	NA	NA	NA	19860	NM_001293625	15354	Mm.336087	NM_008253	ENSMUSG00000015217	Hmgb3	Hmg2a|Hmg4	high mobility group box 3	protein-coding	0.005000	0.497512	
mm_293.1	chr1	23271590	23271790	+	1	NA	NA	NA	-579	NR_029533	387225		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0.015000	0.492537	
mm_39069.1	chr4	154097010	154097210	-	1	NA	NA	NA	63	NM_001126330	22062	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0.030000	0.592040	
mm_25561.1	chr3	116562854	116563054	+	1	NA	NA	NA	-19	NM_027321	109245	Mm.216027	NM_027321	ENSMUSG00000027961	Lrrc39	2010005E21Rik|9430028I06Rik|Myomasp	leucine rich repeat containing 39	protein-coding	0.020000	0.457711	
mm_143306.1	chr17	65986704	65986904	-	1	NA	NA	NA	-35617	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.010000	0.402985	
mm_134932.1	chr16	31081301	31081501	-	1	NA	NA	NA	31	NM_198626	268880	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.115000	0.756219	
mm_28874.1	chr3	97713128	97713328	-	1	NA	NA	NA	-22666	NR_106084	102466229		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	0.020000	0.442786	
mm_90733.1	chr10	5298919	5299119	-	1	NA	NA	NA	-104312	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.020000	0.522388	
mm_36220.1	chr4	62516648	62516848	-	1	NA	NA	NA	3161	NM_001276446	17025	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0.000000	0.611940	
mm_27203.1	chr3	35754316	35754516	-	1	NA	NA	NA	278	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.155000	0.786070	
mm_92341.1	chr10	75835266	75835466	-	1	NA	NA	NA	-485	NM_010361	14872	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.025000	0.527363	
mm_164708.1	chr17	52719766	52719966	+	1	NA	NA	NA	117157	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.000000	0.353234	
mm_137136.1	chr17	23604545	23604745	+	1	NA	NA	NA	3819	NM_001289482	332221	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	0.025000	0.552239	
mm_28964.1	chr3	100685866	100686066	-	1	NA	NA	NA	-493	NM_010763	17156	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0.175000	0.825871	
mm_140493.1	chr17	3462269	3462469	-	1	NA	NA	NA	-19946	NM_001286758	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.030000	0.472637	
mm_47068.1	chr5	116422888	116423088	-	1	NA	NA	NA	-124	NM_030704	80888	Mm.21549	NM_030704	ENSMUSG00000041548	Hspb8	AU018630|AW413033|Cryac|D5Ucla4|E2IG1|H11|H11K|HSP20-like|HSP22	heat shock protein 8	protein-coding	0.040000	0.621891	
mm_10237.1	chr2	6721074	6721274	+	1	NA	NA	NA	488	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.020000	0.572139	-33(GACCATAAAAAG,-,0.00)
mm_115805.1	chr13	19358189	19358389	-	1	NA	NA	NA	37524	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.512438	
mm_57352.1	chr6	124756793	124756993	-	1	NA	NA	NA	-406	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.135000	0.761194	
mm_157554.1	chrX	51972685	51972885	-	1	NA	NA	NA	-13	NM_028851	74279	Mm.159154	NM_028851	ENSMUSG00000031118	1700080O16Rik	-	RIKEN cDNA 1700080O16 gene	protein-coding	0.045000	0.537313	
mm_55385.1	chr6	59016848	59017048	-	1	NA	NA	NA	7554	NM_153574	58909	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0.005000	0.383085	
mm_71173.1	chr8	40595570	40595770	+	1	NA	NA	NA	39122	NM_001040699	54384	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.010000	0.402985	
mm_107530.1	chr12	40518823	40519023	+	1	NA	NA	NA	72870	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.005000	0.353234	6(AACTCTAAAAGC,-,0.00),83(CCTTTAATGAAG,+,0.00)
mm_105887.1	chr11	114931068	114931268	-	1	NA	NA	NA	3218	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.005000	0.512438	
mm_1830.1	chr1	82724788	82724988	+	1	NA	NA	NA	-2	NM_001310697	75734	Mm.396863	NM_029409	ENSMUSG00000026150	Mff	5230400G24Rik|AI314724	mitochondrial fission factor	protein-coding	0.115000	0.636816	
mm_69542.1	chr7	135695627	135695827	-	1	NA	NA	NA	20652	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.472637	
mm_56111.1	chr6	87507985	87508185	-	1	NA	NA	NA	-11758	NM_175476	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.000000	0.393035	
mm_47346.1	chr5	122560647	122560847	-	1	NA	NA	NA	53771	NM_009879	12589	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	0.020000	0.462687	
mm_118436.1	chr14	8049442	8049642	+	1	NA	NA	NA	-30771	NM_025938	67053	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	0.035000	0.517413	-33(AGCTATAAAAGG,-,0.00)
mm_23445.1	chr3	59825617	59825817	+	1	NA	NA	NA	-35334	NM_001243003	666803	Mm.389443	NM_001243003	ENSMUSG00000095522	Gm8298	EG666803	predicted gene 8298	protein-coding	0.000000	0.343284	
mm_73894.1	chr8	119418947	119419147	+	1	NA	NA	NA	-18115	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.015000	0.636816	
mm_35323.1	chr4	25800304	25800504	-	1	NA	NA	NA	-401	NM_010243	14348	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.025000	0.577114	
mm_9821.1	chr1	182403097	182403297	-	1	NA	NA	NA	-5970	NM_173378	209456	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.040000	0.552239	
mm_142867.1	chr17	51814517	51814717	-	1	NA	NA	NA	-2563	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.015000	0.402985	
mm_37358.1	chr4	120570176	120570376	-	1	NA	NA	NA	0	NM_016748	51797	Mm.1815	NM_016748	ENSMUSG00000028633	Ctps	Ctps1	cytidine 5'-triphosphate synthase	protein-coding	0.120000	0.736318	
mm_170274.1	chr18	24869776	24869976	+	1	NA	NA	NA	161253	NM_001289655	225288	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0.010000	0.577114	
mm_68563.1	chr7	114927680	114927880	-	1	NA	NA	NA	-20870	NR_040317	101786	Mm.395157	NR_040317	ENSMUSG00000108379	A730082K24Rik	AU044236	RIKEN cDNA A730082K24 gene	ncRNA	0.050000	0.497512	
mm_92034.1	chr10	62486627	62486827	-	1	NA	NA	NA	78	NM_133672	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.100000	0.711443	
mm_32225.1	chr4	101717803	101718003	+	1	NA	NA	NA	496	NM_010704	16847	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.065000	0.601990	-34(CTCCTTTAAAAG,-,0.00),-33(TCCTTTAAAAGG,-,0.00),-32(CCTTTAAAAGGA,+,0.00)
mm_70121.1	chr7	143008508	143008708	-	1	NA	NA	NA	2949	NM_001128081	27027	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.020000	0.567164	
mm_72571.1	chr8	84128488	84128688	+	1	NA	NA	NA	2599	NM_001013384	244550	Mm.334654	NM_001013384	ENSMUSG00000012889	Podnl1	5832418A03Rik|Gm506	podocan-like 1	protein-coding	0.020000	0.572139	
mm_49059.1	chr6	5390193	5390393	+	1	NA	NA	NA	6907	NM_023048	65255	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0.030000	0.412935	
mm_171632.1	chr4	19386640	19386840	+	1	NA	NA	NA	105890	NM_013927	30952	Mm.445778	NM_013927	ENSMUSG00000056494	Cngb3	CCNC2|CNG6|Cngbeta2	cyclic nucleotide gated channel beta 3	protein-coding	0.030000	0.457711	
mm_62485.1	chr7	101884746	101884946	+	1	NA	NA	NA	-1014	NM_001291352	75430	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.010000	0.388060	
mm_140269.1	chr17	84683054	84683254	+	1	NA	NA	NA	33	NM_026180	67470	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP-binding cassette, sub-family G (WHITE), member 8	protein-coding	0.010000	0.532338	
mm_54402.1	chr6	31528620	31528820	-	1	NA	NA	NA	35217	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	0.020000	0.517413	
mm_65315.1	chr7	24869644	24869844	-	1	NA	NA	NA	-53	NM_182785	232973	Mm.189648	NM_182785	ENSMUSG00000062732	Lypd4	4933400F01Rik	Ly6/Plaur domain containing 4	protein-coding	0.060000	0.661692	
mm_165704.1	chr3	95719057	95719257	+	1	NA	NA	NA	15816	NR_105981	102466787		NR_105981	ENSMUSG00000098737	Mir7014	Gm27837|mmu-mir-7014	microRNA 7014	ncRNA	0.000000	0.432836	
mm_68729.1	chr7	120670125	120670325	-	1	NA	NA	NA	25	NM_001040137	67983	Mm.394441	NM_001040136	ENSMUSG00000030887	Pdzd9	4930408O21Rik	PDZ domain containing 9	protein-coding	0.030000	0.537313	
mm_2673.1	chr1	127213321	127213521	+	1	NA	NA	NA	8435	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.000000	0.432836	
mm_21127.1	chr2	154015893	154016093	-	1	NA	NA	NA	7717	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.005000	0.467662	
mm_49959.1	chr6	40634961	40635161	+	1	NA	NA	NA	6230	NM_001171003	232714	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding	0.015000	0.417910	
mm_80566.1	chr9	83843038	83843238	+	1	NA	NA	NA	8449	NM_001284272	22137	Mm.1904	NM_009445	ENSMUSG00000038379	Ttk	AL022661|Esk1|Mps1|PYT|esk	Ttk protein kinase	protein-coding	0.030000	0.507463	
mm_139322.1	chr17	48410384	48410584	+	1	NA	NA	NA	484	NM_207219	106821	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	0.025000	0.562189	
mm_33207.1	chr4	126466039	126466239	+	1	NA	NA	NA	2444	NM_001317174	236511	Mm.30800	NM_153403	ENSMUSG00000041530	Ago1	Eif2c1	argonaute RISC catalytic subunit 1	protein-coding	0.025000	0.577114	
mm_27664.1	chr3	65380214	65380414	-	1	NA	NA	NA	12239	NM_026155	67437	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.010000	0.398010	
mm_137955.1	chr17	32971505	32971705	+	1	NA	NA	NA	5774	NM_153063	224691	Mm.328953	NM_153063	ENSMUSG00000053600	Zfp472	KRIM-1|Krim-1A|Krim-1B|Krim1	zinc finger protein 472	protein-coding	0.005000	0.417910	
mm_97524.1	chr11	78501672	78501872	+	1	NA	NA	NA	-1741	NM_008759	18292	Mm.134360	NM_008759	ENSMUSG00000001103	Sebox	OG9|Og9x	SEBOX homeobox	protein-coding	0.065000	0.517413	
mm_87042.1	chr10	28757111	28757311	+	1	NA	NA	NA	88851	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.000000	0.343284	
mm_23008.1	chr3	34196649	34196849	+	1	NA	NA	NA	-115395	NM_026332	67713	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.020000	0.452736	-33(AGCTTTTAAAGC,-,0.00),-32(GCTTTTAAAGCT,+,0.00),-8(GACTCTAAATGC,-,0.00)
mm_5470.1	chr1	36558097	36558297	-	1	NA	NA	NA	184	NM_001126047	20353	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.135000	0.741294	
mm_137449.1	chr17	26532845	26533045	+	1	NA	NA	NA	-24473	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.015000	0.582090	
mm_39128.1	chr4	155063956	155064156	-	1	NA	NA	NA	-2974	NM_001042407	668173	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0.000000	0.611940	
mm_140343.1	chr17	86824481	86824681	+	1	NA	NA	NA	70717	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.030000	0.537313	
mm_47284.1	chr5	122113512	122113712	-	1	NA	NA	NA	12632	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.030000	0.532338	
mm_36010.1	chr4	56845910	56846110	-	1	NA	NA	NA	19201	NM_018761	54366	Mm.218891	NM_018761	ENSMUSG00000038816	Ctnnal1	ACRP|AI616177|AW545119|C86009|Catnal1	catenin (cadherin associated protein), alpha-like 1	protein-coding	0.030000	0.562189	
mm_148351.1	chr18	84681899	84682099	-	1	NA	NA	NA	60	NM_001289531	66054	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.010000	0.557214	
mm_79494.1	chr9	57094369	57094569	+	1	NA	NA	NA	18093	NM_011378	20466	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	0.010000	0.417910	
mm_121243.1	chr14	103056679	103056879	+	1	NA	NA	NA	9767	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.025000	0.398010	
mm_102631.1	chr11	62539089	62539289	-	1	NA	NA	NA	72	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.155000	0.771144	
mm_22550.1	chr3	9402971	9403171	+	1	NA	NA	NA	-7	NR_015499	320088	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.015000	0.507463	
mm_167235.1	chr8	15011006	15011206	+	1	NA	NA	NA	81	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.100000	0.706468	
mm_144764.1	chr18	35771626	35771826	+	1	NA	NA	NA	167	NM_019912	56550	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0.125000	0.736318	40(GCGCATAAAGGG,-,0.00)
mm_81853.1	chr9	118703280	118703480	+	1	NA	NA	NA	-8312	NM_001113514	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.015000	0.542289	
mm_152433.1	chr19	10719024	10719224	-	1	NA	NA	NA	19850	NM_007650	12507	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	0.010000	0.422886	
mm_32493.1	chr4	108170040	108170240	+	1	NA	NA	NA	4703	NM_001254754	52430	Mm.270783	NM_026728	ENSMUSG00000028601	Echdc2	1300017C12Rik|2610009M20Rik|D4Ertd765e	enoyl Coenzyme A hydratase domain containing 2	protein-coding	0.010000	0.467662	40(CCCTTTATGGAG,+,0.00)
mm_2168.1	chr1	88259253	88259453	+	1	NA	NA	NA	10055	NR_040291	78605	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.005000	0.517413	
mm_77455.1	chr8	121885873	121886073	-	1	NA	NA	NA	21713	NM_011404	20539	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	0.015000	0.592040	
mm_8699.1	chr1	158356186	158356386	-	1	NA	NA	NA	-26	NM_207583	240843	Mm.329579	NM_207583	ENSMUSG00000004031	Brinp2	6430517E21Rik|BB361039|Fam5b|mKIAA1747	bone morphogenic protein/retinoic acid inducible neural-specific 2	protein-coding	0.055000	0.592040	
mm_96712.1	chr11	69662267	69662467	+	1	NA	NA	NA	282	NR_125917	24070	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	0.045000	0.492537	
mm_7851.1	chr1	132390427	132390627	-	1	NA	NA	NA	-209	NM_001311107	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.025000	0.432836	
mm_126848.1	chr15	89099160	89099360	+	1	NA	NA	NA	10153	NM_027905	223776	Mm.44763	NM_027905	ENSMUSG00000035757	Selenoo	1300018J18Rik|Selo	selenoprotein O	protein-coding	0.015000	0.532338	
mm_13567.1	chr2	112266737	112266937	+	1	NA	NA	NA	523	NM_133649	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.015000	0.472637	
mm_14155.1	chr2	126577740	126577940	+	1	NA	NA	NA	24816	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0.030000	0.378109	
mm_111886.1	chr12	108272477	108272677	-	1	NA	NA	NA	2840	NM_001159910	668158	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010	coiled-coil domain containing 85C	protein-coding	0.010000	0.492537	
mm_167034.1	chr7	73005064	73005264	+	1	NA	NA	NA	96904	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	0.010000	0.412935	-90(CTGTTTAAAAGA,-,0.00)
mm_169313.1	chr14	104715967	104716167	-	1	NA	NA	NA	76920	NR_015593	320249	Mm.320725	NR_015593		D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0.055000	0.517413	-64(GTTTTAAGACCC,+,0.00)
mm_148102.1	chr18	74064821	74065021	-	1	NA	NA	NA	28	NM_172632	225724	Mm.254517	NM_172632	ENSMUSG00000024558	Mapk4	A330097D03Rik|Erk3|Prkm4|p63Mapk	mitogen-activated protein kinase 4	protein-coding	0.150000	0.810945	
mm_106864.1	chr12	8009277	8009477	+	1	NA	NA	NA	31700	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.402985	-30(GTCTTTATAGTC,+,0.00)
mm_159256.1	chr2	153257224	153257424	+	1	NA	NA	NA	15792	NM_080463	140484	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	0.005000	0.368159	-31(CCCTATAAATGG,-,0.00),37(CCTTAAATATGG,+,0.00),57(TTTTTAATAGCC,+,0.00)
mm_71213.1	chr8	40892167	40892367	+	1	NA	NA	NA	29900	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.030000	0.547264	
mm_93551.1	chr10	116114152	116114352	-	1	NA	NA	NA	-335	NM_001161855	619332	Mm.391427	NM_001033821	ENSMUSG00000074734	4933416C03Rik	-	RIKEN cDNA 4933416C03 gene	protein-coding	0.075000	0.626866	
mm_139412.1	chr17	52624938	52625138	+	1	NA	NA	NA	22329	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.005000	0.393035	
mm_2442.1	chr1	98421013	98421213	+	1	NA	NA	NA	-11	NM_001164233	70866	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding	0.035000	0.502488	
mm_113548.1	chr13	38037173	38037373	+	1	NA	NA	NA	284	NM_024242	71340	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1 (yeast)	protein-coding	0.080000	0.651741	
mm_19231.1	chr2	84678744	84678944	-	1	NA	NA	NA	-16	NM_025868	66958	Mm.371621	NM_025868	ENSMUSG00000050043	Tmx2	2310042M24Rik|AA589631|Txndc14	thioredoxin-related transmembrane protein 2	protein-coding	0.045000	0.517413	-77(GTTTTTATAGAG,+,0.00)
mm_95666.1	chr11	53785390	53785590	+	1	NA	NA	NA	15017	NM_001159396	16362	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.000000	0.348259	-80(GCCTTTAAAAAC,-,0.00),-55(GGATTTAAAAAC,-,0.00),19(CTATATATAGCC,+,0.00)
mm_51099.1	chr6	67271814	67272014	+	1	NA	NA	NA	4935	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.060000	0.467662	
mm_81125.1	chr9	106463700	106463900	+	1	NA	NA	NA	2140	NM_001159652	436090	Mm.482905	NM_001159652	ENSMUSG00000091735	Gpr62	4933402E03Rik	G protein-coupled receptor 62	protein-coding	0.010000	0.587065	
mm_121520.1	chr14	122105033	122105233	+	1	NA	NA	NA	1841	NR_015586	319727	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	0.040000	0.527363	
mm_9148.1	chr1	170913593	170913793	-	1	NA	NA	NA	-752	NM_001029984	435653	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0.025000	0.567164	
mm_34698.1	chr4	152057972	152058172	+	1	NA	NA	NA	18751	NM_028727	74035	Mm.275803	NM_028727	ENSMUSG00000028948	Nol9	4632412I24Rik|6030462G04Rik|AI449622|AW490720	nucleolar protein 9	protein-coding	0.015000	0.378109	
mm_60681.1	chr7	45128945	45129145	+	1	NA	NA	NA	-300	NM_009438	22121	Mm.180458	NM_009438	ENSMUSG00000074129	Rpl13a	1810026N22Rik|Tstap198-7|tum-antigen	ribosomal protein L13A	protein-coding	0.075000	0.611940	
mm_83695.1	chr9	50616806	50617006	-	1	NA	NA	NA	-415	NM_028300	72614	Mm.147232	NM_028300	ENSMUSG00000000167	Pih1d2	2700059L22Rik	PIH1 domain containing 2	protein-coding	0.125000	0.771144	
mm_139748.1	chr17	63829843	63830043	+	1	NA	NA	NA	-34038	NM_001037997	14158	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.015000	0.532338	
mm_162857.1	chr10	90576921	90577121	+	1	NA	NA	NA	330	NM_181398	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.040000	0.557214	
mm_93315.1	chr10	98913851	98914051	-	1	NA	NA	NA	-1201	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.100000	0.696517	
mm_69900.1	chr7	141638758	141638958	-	1	NA	NA	NA	16461	NM_001330001	353328	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0.020000	0.522388	
mm_163272.1	chr11	115189502	115189702	+	1	NA	NA	NA	2115	NM_001033393	320534	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	0.015000	0.517413	
mm_155306.1	chrX	61185945	61186145	+	1	NA	NA	NA	-487	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.020000	0.467662	
mm_144243.1	chr18	10725558	10725758	+	1	NA	NA	NA	33	NM_144860	225164	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0.140000	0.711443	
mm_7473.1	chr1	120494031	120494231	-	1	NA	NA	NA	10953	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.015000	0.562189	
mm_133420.1	chr16	86816794	86816994	+	1	NA	NA	NA	-537291	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0.005000	0.422886	
mm_85304.1	chr9	100546016	100546216	-	1	NA	NA	NA	18	NM_010878	17973	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0.140000	0.731343	
mm_57833.1	chr6	129464967	129465167	-	1	NA	NA	NA	7712	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.005000	0.288557	-73(TCTTTTATAGCT,+,0.00)
mm_1041.1	chr1	58795494	58795694	+	1	NA	NA	NA	220	NM_009812	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.060000	0.567164	
mm_113819.1	chr13	46736021	46736221	+	1	NA	NA	NA	-8272	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.040000	0.532338	-99(GGCTATAAAATG,-,0.00)
mm_130629.1	chr15	100422915	100423115	-	1	NA	NA	NA	40	NM_001146161	18174	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0.095000	0.716418	
mm_66034.1	chr7	30634660	30634860	-	1	NA	NA	NA	1092	NM_007959	14008	Mm.4829	NM_007959	ENSMUSG00000006311	Etv2	Etsrp71	ets variant 2	protein-coding	0.050000	0.601990	-36(GACTATAAAATG,-,0.00)
mm_170399.1	chr1	86359225	86359425	-	1	NA	NA	NA	130	NM_010880	17975	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	0.105000	0.631841	
mm_166175.1	chr5	30181704	30181904	+	1	NA	NA	NA	11065	NR_035486	100316709		NR_035486	ENSMUSG00000088113	Mir1960	mir-1960|mmu-mir-1960	microRNA 1960	ncRNA	0.000000	0.343284	
mm_171493.1	chr4	146156819	146157019	+	1	NA	NA	NA	92	NM_001177546	667666	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164|OTTMUSG00000010694	zinc finger protein 600	protein-coding	0.030000	0.547264	
mm_16963.1	chr2	17650295	17650495	-	1	NA	NA	NA	80673	NM_028757	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0.010000	0.368159	
mm_268.1	chr1	20951592	20951792	+	1	NA	NA	NA	66	NM_027974	71877	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	0.070000	0.651741	
mm_164225.1	chr15	85581729	85581929	-	1	NA	NA	NA	-8	NM_009528	22422	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	0.140000	0.776119	
mm_29805.1	chr3	127789733	127789933	-	1	NA	NA	NA	-80	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.050000	0.621891	
mm_108754.1	chr12	88990051	88990251	+	1	NA	NA	NA	36761	NM_172544	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.005000	0.358209	
mm_22443.1	chr2	181693629	181693829	-	1	NA	NA	NA	81	NM_001291206	56470	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0.060000	0.611940	
mm_153204.1	chr19	34640642	34640842	-	1	NA	NA	NA	1	NM_053217	112419	Mm.440727	NM_053217	ENSMUSG00000067297	Ifit1bl2	2010002M12Rik|AW412491|Ifit1b	interferon induced protein with tetratricopeptide repeats 1B like 2	protein-coding	0.020000	0.517413	
mm_12071.1	chr2	59640269	59640469	+	1	NA	NA	NA	-6400	NM_001290659	66860	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.005000	0.412935	
mm_8143.1	chr1	136345696	136345896	-	1	NA	NA	NA	308	NM_001081360	67886	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	0.165000	0.766169	
mm_158473.1	chrX	141208923	141209123	-	1	NA	NA	NA	-252312	NM_001164177	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	0.005000	0.358209	
mm_34879.1	chr4	155577361	155577561	+	1	NA	NA	NA	13646	NM_001159637	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.020000	0.557214	
mm_163741.1	chr13	119713804	119714004	+	1	NA	NA	NA	23553	NM_001291439	208715	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	0.015000	0.487562	
mm_33880.1	chr4	136172469	136172669	+	1	NA	NA	NA	295	NM_177733	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.135000	0.731343	
mm_92576.1	chr10	79961231	79961431	-	1	NA	NA	NA	1179	NM_175450	216156	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.005000	0.467662	
mm_46514.1	chr5	105281692	105281892	-	1	NA	NA	NA	11907	NM_194336	100702	Mm.491210	NM_194336	ENSMUSG00000079362	Gbp6	AI595338|Mpa2l	guanylate binding protein 6	protein-coding	0.005000	0.442786	
mm_6877.1	chr1	84363190	84363390	-	1	NA	NA	NA	-78645	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.005000	0.487562	
mm_93861.1	chr10	122982245	122982445	-	1	NA	NA	NA	3379	NR_029527	387251		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.005000	0.353234	
mm_146558.1	chr18	6226866	6227066	-	1	NA	NA	NA	14558	NM_008448	16573	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.005000	0.268657	
mm_68892.1	chr7	126448516	126448716	-	1	NA	NA	NA	14457	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.055000	0.582090	
mm_19280.1	chr2	87496799	87496999	-	1	NA	NA	NA	-4481	NM_178250	347712	Mm.6018	NM_178250	ENSMUSG00000025839	Pramel7	AA675346|C81180	preferentially expressed antigen in melanoma like 7	protein-coding	0.010000	0.432836	
mm_97784.1	chr11	82764253	82764453	+	1	NA	NA	NA	8	NM_025884	66983	Mm.29622	NM_025884	ENSMUSG00000046010	Zfp830	2410003C20Rik|AV301118|AW048207|Ccdc16|Omcg1|Znf830	zinc finger protein 830	protein-coding	0.080000	0.616915	
mm_16027.1	chr2	167588992	167589192	+	1	NA	NA	NA	42913	NM_001311146	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.030000	0.577114	
mm_160396.1	chr8	69140632	69140832	-	1	NA	NA	NA	221	NM_199364	211134	Mm.409446	NM_199364	ENSMUSG00000036306	Lzts1	F37|FEZ1|PSD-Zip70	leucine zipper, putative tumor suppressor 1	protein-coding	0.025000	0.547264	
mm_95240.1	chr11	44617429	44617629	+	1	NA	NA	NA	-571	NM_001290711	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.020000	0.497512	
mm_79838.1	chr9	64806075	64806275	+	1	NA	NA	NA	-4836	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.010000	0.462687	
mm_124166.1	chr14	93700812	93701012	-	1	NA	NA	NA	187976	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.368159	-35(CCTTATAAAAGC,+,0.00),-35(CCTTATAAAAGC,-,0.00)
mm_37928.1	chr4	132883236	132883436	-	1	NA	NA	NA	1122	NM_133887	100226	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	0.000000	0.298507	
mm_61325.1	chr7	68226536	68226736	+	1	NA	NA	NA	37597	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.025000	0.452736	
mm_32069.1	chr4	97778031	97778231	+	1	NA	NA	NA	505	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.100000	0.601990	
mm_157287.1	chrX	20861128	20861328	-	1	NA	NA	NA	1954	NR_049190	100885829		NR_049190	ENSMUSG00000093408	Mir5617	Gm25192|mir-5617|mmu-mir-5617	microRNA 5617	ncRNA	0.005000	0.437811	
mm_115357.1	chr13	112800834	112801034	+	1	NA	NA	NA	157	NM_008247	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.090000	0.676617	
mm_171723.1	chr4	86856633	86856833	-	1	NA	NA	NA	634	NM_009096	20104	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	0.050000	0.527363	
mm_155492.1	chrX	73734015	73734215	+	1	NA	NA	NA	-16300	NM_001313698	27061	Mm.17	NM_012060	ENSMUSG00000002015	Bcap31	Bap31	B cell receptor associated protein 31	protein-coding	0.010000	0.512438	-6(TACTCTATAAGC,-,0.00)
mm_36748.1	chr4	101172017	101172217	-	1	NA	NA	NA	93165	NM_146145	16451	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.005000	0.398010	
mm_88615.1	chr10	79826217	79826417	+	1	NA	NA	NA	5296	NM_030218	78906	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.035000	0.577114	
mm_105075.1	chr11	100770845	100771045	-	1	NA	NA	NA	12	NM_031871	80860	Mm.37308	NM_031871	ENSMUSG00000017747	Ghdc	D11Lgp1e	GH3 domain containing	protein-coding	0.025000	0.522388	-14(GCCTTTTAAAGT,-,0.00),-13(CCTTTTAAAGTC,+,0.00)
mm_89357.1	chr10	88204383	88204583	+	1	NA	NA	NA	3386	NM_027487	67282	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	0.010000	0.462687	
mm_172574.1	chr8	11312790	11312990	+	1	NA	NA	NA	-64	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.125000	0.741294	
mm_36519.1	chr4	84546192	84546392	-	1	NA	NA	NA	128794	NM_172870	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.015000	0.472637	-39(GACTTTAAGAGA,-,0.00),-38(ACTTTAAGAGAC,+,0.00)
mm_76692.1	chr8	94173379	94173579	-	1	NA	NA	NA	861	NM_008630	17750	Mm.147226	NM_008630	ENSMUSG00000031762	Mt2	AA409533|MT-II|Mt-2	metallothionein 2	protein-coding	0.020000	0.477612	
mm_15439.1	chr2	157283590	157283790	+	1	NA	NA	NA	-4141	NM_001039557	629499	Mm.384235	NM_001039557	ENSMUSG00000074627	Mroh8	4922505G16Rik	maestro heat-like repeat family member 8	protein-coding	0.020000	0.582090	
mm_13103.1	chr2	91457425	91457625	+	1	NA	NA	NA	-6	NM_172668	228357	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0.110000	0.756219	68(GCTTTTCAACCC,+,0.00)
mm_19618.1	chr2	102812398	102812598	-	1	NA	NA	NA	89167	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.005000	0.318408	
mm_146550.1	chr18	6220775	6220975	-	1	NA	NA	NA	20649	NM_008448	16573	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.015000	0.378109	
mm_44279.1	chr5	5783534	5783734	-	1	NA	NA	NA	-34317	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.035000	0.457711	
mm_132848.1	chr16	46039408	46039608	+	1	NA	NA	NA	-29095	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.005000	0.467662	
mm_69167.1	chr7	127214655	127214855	-	1	NA	NA	NA	3147	NM_016754	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.060000	0.616915	
mm_128366.1	chr15	42033751	42033951	-	1	NA	NA	NA	-164131	NM_175456	223513	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0.030000	0.517413	
mm_10574.1	chr2	18064616	18064816	+	1	NA	NA	NA	131	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.090000	0.741294	
mm_18717.1	chr2	72446256	72446456	-	1	NA	NA	NA	-29863	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.005000	0.482587	
mm_166833.1	chr7	19271442	19271642	-	1	NA	NA	NA	312	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.095000	0.756219	
mm_138670.1	chr17	35879802	35880002	+	1	NA	NA	NA	124	NM_026987	69192	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	0.135000	0.721393	
mm_83489.1	chr9	45945078	45945278	-	1	NA	NA	NA	-5588	NR_106055	102465659		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.025000	0.567164	
mm_65111.1	chr7	19309943	19310143	-	1	NA	NA	NA	2	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.075000	0.592040	
mm_63147.1	chr7	123228782	123228982	+	1	NA	NA	NA	14016	NM_146198	233836	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.000000	0.432836	
mm_22095.1	chr2	168955420	168955620	-	1	NA	NA	NA	67	NM_009564	22722	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	0.055000	0.656716	
mm_33904.1	chr4	136286033	136286233	+	1	NA	NA	NA	64	NM_009557	22704	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	0.050000	0.577114	
mm_80495.1	chr9	78481925	78482125	+	1	NA	NA	NA	-301	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.055000	0.577114	
mm_73446.1	chr8	106243181	106243381	+	1	NA	NA	NA	32227	NM_145404	214572	Mm.251804	NM_145404	ENSMUSG00000060098	Prmt7	4933402B05Rik|BC006705	protein arginine N-methyltransferase 7	protein-coding	0.030000	0.582090	
mm_107502.1	chr12	38868055	38868255	+	1	NA	NA	NA	84444	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.005000	0.283582	-34(GTGTTTAAATGG,-,0.00)
mm_59475.1	chr7	27455904	27456104	+	1	NA	NA	NA	3586	NM_001290525	233016	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0.005000	0.412935	
mm_93937.1	chr10	127188691	127188891	-	1	NA	NA	NA	1032	NM_001166413	52666	Mm.272230	NM_028027	ENSMUSG00000019467	Arhgef25	2410008H17Rik|D10Ertd610e|GEFT	Rho guanine nucleotide exchange factor (GEF) 25	protein-coding	0.105000	0.776119	
mm_49642.1	chr6	30805362	30805562	+	1	NA	NA	NA	64163	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.010000	0.547264	
mm_69908.1	chr7	141639986	141640186	-	1	NA	NA	NA	15233	NM_001330001	353328	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0.015000	0.457711	
mm_65911.1	chr7	30194057	30194257	-	1	NA	NA	NA	891	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.030000	0.477612	
mm_80748.1	chr9	95047761	95047961	+	1	NA	NA	NA	296032	NR_106116	102465763		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.010000	0.363184	-63(CTTTTTATACAT,+,0.00)
mm_22113.1	chr2	170134442	170134642	-	1	NA	NA	NA	-3322	NM_001033299	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.015000	0.472637	
mm_40249.1	chr5	38108046	38108246	+	1	NA	NA	NA	51321	NM_010942	18196	Mm.7414	NM_010942	ENSMUSG00000029126	Nsg1	Neep21|m234|p21	neuron specific gene family member 1	protein-coding	0.005000	0.472637	
mm_7824.1	chr1	132067808	132068008	-	1	NA	NA	NA	154	NM_172510	213006	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4a	A230072B04|A930031D07Rik|AI850289|Mfsd4	major facilitator superfamily domain containing 4A	protein-coding	0.120000	0.746269	
mm_140311.1	chr17	86167686	86167886	+	1	NA	NA	NA	1	NM_011104	18754	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0.185000	0.825871	
mm_81910.1	chr9	120074721	120074921	+	1	NA	NA	NA	-6525	NM_009987	13051	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	0.025000	0.417910	5(ACCTATTAAAAC,-,0.00)
mm_86080.1	chr9	114781749	114781949	-	1	NA	NA	NA	144	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.130000	0.766169	
mm_43440.1	chr5	136096351	136096551	+	1	NA	NA	NA	-9071	NR_106002	102465626		NR_106002	ENSMUSG00000099003	Mir7035	Gm27661|mmu-mir-7035	microRNA 7035	ncRNA	0.000000	0.417910	-6(TTTTTTAAAGAG,+,0.00)
mm_100200.1	chr11	116807781	116807981	+	1	NA	NA	NA	20165	NM_026280	67622	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0.010000	0.487562	
mm_53383.1	chr6	129517432	129517632	+	1	NA	NA	NA	4975	NM_001081186	330428	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	0.015000	0.412935	-61(TCTTTTATACCA,+,0.00)
mm_170573.1	chr19	5288261	5288461	-	1	NA	NA	NA	7094	NM_030109	319322	Mm.196532	NM_030109	ENSMUSG00000024853	Sf3b2	145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150	splicing factor 3b, subunit 2	protein-coding	0.020000	0.547264	
mm_120846.1	chr14	75200355	75200555	+	1	NA	NA	NA	-41832	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.030000	0.497512	-67(TGGCTTAAAAAG,-,0.00),-65(GCTTAAAAAGCA,+,0.00)
mm_38464.1	chr4	140616973	140617173	-	1	NA	NA	NA	31683	NM_001112723	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.050000	0.577114	
mm_12159.1	chr2	62147679	62147879	+	1	NA	NA	NA	101264	NM_033552	94229	Mm.314497	NM_033552	ENSMUSG00000026904	Slc4a10	NCBE|mKIAA4136	solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	protein-coding	0.010000	0.462687	
mm_147406.1	chr18	44662129	44662329	-	1	NA	NA	NA	37	NM_001085374	328949	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0.055000	0.587065	
mm_35062.1	chr4	6453596	6453796	-	1	NA	NA	NA	575	NM_010945	18201	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.105000	0.721393	
mm_120053.1	chr14	56668196	56668396	+	1	NA	NA	NA	48	NM_023773	75339	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	0.120000	0.666667	
mm_125391.1	chr15	41173573	41173773	+	1	NA	NA	NA	-273809	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.040000	0.621891	
mm_106412.1	chr11	119086141	119086341	-	1	NA	NA	NA	-4	NM_007625	12418	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.155000	0.756219	
mm_55610.1	chr6	72010065	72010265	-	1	NA	NA	NA	32363	NR_046180	330350	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0.010000	0.477612	3(GTCCTTTTAAGA,-,0.00),5(CCTTTTAAGATG,+,0.00)
mm_79684.1	chr9	59942023	59942223	+	1	NA	NA	NA	7956	NM_013708	23958	Mm.103641	NM_013708	ENSMUSG00000032292	Nr2e3	A930035N01Rik|PNR|RNR|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding	0.030000	0.522388	
mm_146781.1	chr18	20061550	20061750	-	1	NA	NA	NA	-2096	NM_001317365	13506	Mm.280547	NM_013505	ENSMUSG00000024331	Dsc2	AW228162	desmocollin 2	protein-coding	0.010000	0.487562	
mm_31775.1	chr4	63558806	63559006	+	1	NA	NA	NA	-1454	NM_144905	230279	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.095000	0.701493	
mm_95457.1	chr11	50376978	50377178	+	1	NA	NA	NA	-641	NM_021510	59013	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.090000	0.681592	
mm_49222.1	chr6	15793436	15793636	+	1	NA	NA	NA	72875	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.010000	0.388060	
mm_124652.1	chr15	5185621	5185821	+	1	NA	NA	NA	161	NM_026213	67515	Mm.254979	NM_026213	ENSMUSG00000022151	Ttc33	2410099M07Rik|2900001O04Rik|AI507072|AW538342|Osrf	tetratricopeptide repeat domain 33	protein-coding	0.050000	0.512438	
mm_146786.1	chr18	20114555	20114755	-	1	NA	NA	NA	118	NM_001291804	13505	Mm.33740	NM_013504	ENSMUSG00000044322	Dsc1	1110020A10Rik|AI507491	desmocollin 1	protein-coding	0.005000	0.557214	
mm_133256.1	chr16	77329404	77329604	+	1	NA	NA	NA	176	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.045000	0.547264	
mm_145662.1	chr18	61130796	61130996	+	1	NA	NA	NA	13428	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.010000	0.512438	
mm_42959.1	chr5	123076215	123076415	+	1	NA	NA	NA	40	NM_001039723	330189	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0.155000	0.791045	
mm_45790.1	chr5	87490772	87490972	-	1	NA	NA	NA	-1	NM_053184	94215	Mm.26794	NM_053184	ENSMUSG00000106677	Ugt2a1	-	UDP glucuronosyltransferase 2 family, polypeptide A1	protein-coding	0.000000	0.303483	69(CCTTTTAGAGAA,+,0.00),83(GGATTTTAAAAG,-,0.00)
mm_79442.1	chr9	56090077	56090277	+	1	NA	NA	NA	201	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.040000	0.601990	
mm_5578.1	chr1	39551875	39552075	-	1	NA	NA	NA	-3135	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.040000	0.552239	
mm_131402.1	chr16	14373232	14373432	+	1	NA	NA	NA	11774	NM_008576	17250	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.010000	0.368159	
mm_110284.1	chr12	32109284	32109484	-	1	NA	NA	NA	-48105	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.020000	0.537313	
mm_110586.1	chr12	56529349	56529549	-	1	NA	NA	NA	-29	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.045000	0.631841	
mm_22219.1	chr2	174345021	174345221	-	1	NA	NA	NA	15032	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.045000	0.552239	
mm_123005.1	chr14	54993590	54993790	-	1	NA	NA	NA	859	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.025000	0.522388	
mm_105478.1	chr11	105937758	105937958	-	1	NA	NA	NA	6289	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.020000	0.592040	
mm_157691.1	chrX	60403807	60404007	-	1	NA	NA	NA	74	NM_001001798	320940	Mm.490394	NM_001001798	ENSMUSG00000062949	Atp11c	A330005H02Rik|AI315324|Ig	ATPase, class VI, type 11C	protein-coding	0.115000	0.731343	
mm_162793.1	chr10	75853150	75853350	+	1	NA	NA	NA	7000	NM_010798	17319	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor	protein-coding	0.010000	0.437811	
mm_130501.1	chr15	98831343	98831543	-	1	NA	NA	NA	65	NM_016781	19082	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.105000	0.731343	
mm_31951.1	chr4	86748521	86748721	+	1	NA	NA	NA	66	NM_184088	329877	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	0.080000	0.631841	
mm_129801.1	chr15	82899740	82899940	-	1	NA	NA	NA	760	NR_045068	100504637	Mm.440928	NR_045068	ENSMUSG00000100199	Gm20324	-	predicted gene, 20324	ncRNA	0.150000	0.776119	
mm_71654.1	chr8	60508626	60508826	+	1	NA	NA	NA	2602	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.010000	0.328358	
mm_92778.1	chr10	81201952	81202152	-	1	NA	NA	NA	-15	NM_027120	69564	Mm.437211	NM_027120	ENSMUSG00000004939	Nmrk2	2310015C21Rik|Itgb1bp3|Mibp	nicotinamide riboside kinase 2	protein-coding	0.025000	0.616915	-34(ACCTATAAATGC,-,0.00)
mm_69857.1	chr7	141434189	141434389	-	1	NA	NA	NA	305	NM_001177576	68267	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0.015000	0.557214	
mm_151683.1	chr19	4269128	4269328	-	1	NA	NA	NA	-56	NM_198113	245857	Mm.248388	NM_198113	ENSMUSG00000034616	Ssh3	BC028922|SSH-3|mSSH-3L	slingshot homolog 3 (Drosophila)	protein-coding	0.085000	0.666667	0(GGCCCTTTAAGG,-,0.00),1(GCCCTTTAAGGG,-,0.00),2(CCCTTTAAGGGC,+,0.00),3(CCTTTAAGGGCC,+,0.00)
mm_11246.1	chr2	29890379	29890579	+	1	NA	NA	NA	416	NM_013615	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.040000	0.631841	
mm_81993.1	chr9	121472363	121472563	+	1	NA	NA	NA	23231	NM_001284508	12424	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.055000	0.646766	
mm_165085.1	chr19	47228756	47228956	+	1	NA	NA	NA	13	NM_001163480	18011	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.040000	0.676617	
mm_27611.1	chr3	59210766	59210966	-	1	NA	NA	NA	16	NM_028808	74191	Mm.90067	NM_028808	ENSMUSG00000036362	P2ry13	2010001L06Rik|GPCR1|GPR94|Gpr86|P2Y13|P2yr13|SP174	purinergic receptor P2Y, G-protein coupled 13	protein-coding	0.005000	0.378109	74(TGCTATAAAAGG,-,0.00)
mm_44572.1	chr5	24813896	24814096	-	1	NA	NA	NA	28365	NM_053075	19744	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.010000	0.378109	7(CCATTAATGGCA,+,0.00)
mm_150078.1	chr19	29386854	29387054	+	1	NA	NA	NA	19516	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.313433	
mm_105349.1	chr11	102999749	102999949	-	1	NA	NA	NA	72	NR_105896	102466988		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.035000	0.572139	
mm_148342.1	chr18	84589830	84590030	-	1	NA	NA	NA	-426	NM_001033341	240476	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.085000	0.686567	
mm_163761.1	chr13	119941880	119942080	+	1	NA	NA	NA	8826	NM_001033769	333467	Mm.387257	NM_001033769	ENSMUSG00000078537	B020031M17Rik	-	RIKEN cDNA B020031M17 gene	protein-coding	0.010000	0.452736	-33(GCCTATATAAAG,-,0.00),-31(CTATATAAAGAC,+,0.00)
mm_147624.1	chr18	58072772	58072972	-	1	NA	NA	NA	137054	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.015000	0.502488	
mm_11798.1	chr2	43625065	43625265	+	1	NA	NA	NA	69840	NM_027552	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.000000	0.318408	84(GGCCTGATAAGC,-,0.00)
mm_148679.1	chr19	5645443	5645643	+	1	NA	NA	NA	8053	NM_009045	19697	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.025000	0.522388	
mm_34391.1	chr4	144977347	144977547	+	1	NA	NA	NA	84310	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.000000	0.467662	
mm_103700.1	chr11	79516340	79516540	-	1	NA	NA	NA	7322	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.005000	0.442786	
mm_1993.1	chr1	87126228	87126428	+	1	NA	NA	NA	1320	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.010000	0.517413	
mm_74757.1	chr8	19142560	19142760	-	1	NA	NA	NA	1901	NM_001286493	546038	Mm.99206	NM_001034905	ENSMUSG00000059463	Spag11b	EG546038|Ep2c/h|Spag11c/h	sperm associated antigen 11B	protein-coding	0.005000	0.368159	
mm_80637.1	chr9	89218354	89218554	+	1	NA	NA	NA	7264	NM_026829	107885	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.020000	0.507463	
mm_128755.1	chr15	64922203	64922403	-	1	NA	NA	NA	-7	NM_009623	11514	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	0.100000	0.696517	
mm_59947.1	chr7	30425607	30425807	+	1	NA	NA	NA	2403	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.035000	0.621891	
mm_124167.1	chr14	93710662	93710862	-	1	NA	NA	NA	178126	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.005000	0.363184	
mm_108584.1	chr12	85121963	85122163	+	1	NA	NA	NA	11230	NM_030225	78920	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0.020000	0.597015	
mm_49332.1	chr6	21215458	21215658	+	1	NA	NA	NA	-551	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.085000	0.641791	
mm_78491.1	chr9	32704080	32704280	+	1	NA	NA	NA	8138	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.010000	0.402985	
mm_161694.1	chr17	23600830	23601030	+	1	NA	NA	NA	104	NM_001289482	332221	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	0.030000	0.572139	
mm_48544.1	chr5	142905361	142905561	-	1	NA	NA	NA	1293	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.015000	0.537313	
mm_76039.1	chr8	77451989	77452189	-	1	NA	NA	NA	-64967	NR_028125	70345	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.025000	0.353234	
mm_114753.1	chr13	85126477	85126677	+	1	NA	NA	NA	-62808	NM_001347587	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0.005000	0.283582	
mm_22749.1	chr3	19966251	19966451	+	1	NA	NA	NA	9297	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.010000	0.457711	
mm_105738.1	chr11	109358661	109358861	-	1	NA	NA	NA	-4033	NM_010303	14674	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0.010000	0.502488	
mm_85182.1	chr9	96631421	96631621	-	1	NA	NA	NA	-18	NM_053268	114713	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.140000	0.781095	
mm_57965.1	chr6	135254243	135254443	-	1	NA	NA	NA	-7	NM_001080553	14840	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	0.020000	0.597015	
mm_96698.1	chr11	69632948	69633148	+	1	NA	NA	NA	77	NM_011814	23879	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0.165000	0.815920	
mm_78413.1	chr9	30736465	30736665	+	1	NA	NA	NA	184385	NM_001329420	235130	Mm.65867	NM_001024139	ENSMUSG00000033453	Adamts15	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15	protein-coding	0.000000	0.427861	68(GCATAAAGAGCC,+,0.00)
mm_169120.1	chr13	51636715	51636915	-	1	NA	NA	NA	-8417	NM_025415	66197	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0.000000	0.388060	
mm_125306.1	chr15	37318295	37318495	+	1	NA	NA	NA	85359	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	0.040000	0.442786	
mm_27385.1	chr3	50628312	50628512	-	1	NA	NA	NA	-184799	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.020000	0.502488	
mm_23975.1	chr3	85915619	85915819	+	1	NA	NA	NA	-28201	NM_177130	320302	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding	0.035000	0.462687	
mm_49853.1	chr6	38433776	38433976	+	1	NA	NA	NA	-49	NM_177185	320538	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	0.090000	0.626866	
mm_103136.1	chr11	70237803	70238003	-	1	NA	NA	NA	11	NM_001177601	104457	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	0.120000	0.721393	
mm_98709.1	chr11	96306983	96307183	+	1	NA	NA	NA	-173	NR_131758	75395	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	0.030000	0.512438	
mm_102947.1	chr11	69617631	69617831	-	1	NA	NA	NA	174	NM_011367	20415	Mm.1431	NM_011367	ENSMUSG00000005202	Shbg	ABP	sex hormone binding globulin	protein-coding	0.015000	0.537313	
mm_114972.1	chr13	97241026	97241226	+	1	NA	NA	NA	21	NM_007930	13803	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.130000	0.736318	
mm_67698.1	chr7	89518194	89518394	-	1	NA	NA	NA	-708	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.020000	0.552239	
mm_36068.1	chr4	57943717	57943917	-	1	NA	NA	NA	12594	NM_011660	22166	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.000000	0.323383	
mm_92818.1	chr10	81459805	81460005	-	1	NA	NA	NA	13226	NM_001311127	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.015000	0.427861	
mm_22999.1	chr3	34045970	34046170	+	1	NA	NA	NA	25991	NM_001113188	14359	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0.020000	0.427861	
mm_59714.1	chr7	28766685	28766885	+	1	NA	NA	NA	33	NM_001122766	64383	Mm.272443	NM_022432	ENSMUSG00000015149	Sirt2	5730427M03Rik|SIR2L2|Sir2l	sirtuin 2	protein-coding	0.070000	0.577114	
mm_111420.1	chr12	91589509	91589709	-	1	NA	NA	NA	40	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.050000	0.427861	
mm_144419.1	chr18	20962795	20962995	+	1	NA	NA	NA	18270	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.050000	0.507463	
mm_77448.1	chr8	121805215	121805415	-	1	NA	NA	NA	24254	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.010000	0.457711	
mm_34758.1	chr4	152338841	152339041	+	1	NA	NA	NA	290	NM_001081376	269610	Mm.40192	NM_029216	ENSMUSG00000005045	Chd5	4930532L22Rik|AW060752|B230399N07Rik|CHD-5	chromodomain helicase DNA binding protein 5	protein-coding	0.140000	0.771144	
mm_69801.1	chr7	141178413	141178613	-	1	NA	NA	NA	-5662	NM_001172100	107702	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.035000	0.497512	
mm_123944.1	chr14	73376690	73376890	-	1	NA	NA	NA	8481	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.005000	0.318408	
mm_80535.1	chr9	80305651	80305851	+	1	NA	NA	NA	140717	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.025000	0.402985	
mm_98178.1	chr11	87760442	87760642	+	1	NA	NA	NA	1	NM_172449	207777	Mm.342019	NM_172449	ENSMUSG00000034156	Bzrap1	D230016K05|PRAX-1|Tspoap1|mKIAA0612	benzodiazepine receptor associated protein 1	protein-coding	0.030000	0.621891	
mm_52988.1	chr6	123264761	123264961	+	1	NA	NA	NA	2754	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.000000	0.402985	
mm_63442.1	chr7	127482962	127483162	+	1	NA	NA	NA	-2159	NM_010183	14123	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.035000	0.661692	
mm_102321.1	chr11	57507013	57507213	-	1	NA	NA	NA	11531	NM_001168667	67726	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	0.015000	0.492537	
mm_130212.1	chr15	95654585	95654785	-	1	NA	NA	NA	86	NM_207533	223843	Mm.152937	NM_207533	ENSMUSG00000045608	Dbx2	9430056A22Rik|9630005K15|AI846217|Gm1229	developing brain homeobox 2	protein-coding	0.065000	0.651741	
mm_108427.1	chr12	82244558	82244758	+	1	NA	NA	NA	-66691	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.020000	0.447761	
mm_129694.1	chr15	81585939	81586139	-	1	NA	NA	NA	-175	NM_177821	328572	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.125000	0.761194	
mm_15373.1	chr2	156457143	156457343	+	1	NA	NA	NA	-18291	NM_001006664	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.005000	0.497512	
mm_56726.1	chr6	115653899	115654099	-	1	NA	NA	NA	22636	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.010000	0.412935	
mm_167374.1	chr8	91313348	91313548	+	1	NA	NA	NA	-77	NM_011936	26383	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	0.065000	0.601990	
mm_99002.1	chr11	98798575	98798775	+	1	NA	NA	NA	2906	NM_028722	74026	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male-specific lethal 1 homolog (Drosophila)	protein-coding	0.025000	0.492537	-51(CACCTTAAAAGA,-,0.00)
mm_138308.1	chr17	34647022	34647222	+	1	NA	NA	NA	-24	NM_017406	12915	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	0.085000	0.636816	
mm_139087.1	chr17	46812690	46812890	+	1	NA	NA	NA	18623	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.010000	0.502488	
mm_36308.1	chr4	69395366	69395566	-	1	NA	NA	NA	-441069	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.010000	0.467662	
mm_102584.1	chr11	61854922	61855122	-	1	NA	NA	NA	70	NM_013881	29869	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.180000	0.776119	
mm_10324.1	chr2	11250393	11250593	+	1	NA	NA	NA	78111	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.010000	0.492537	
mm_62357.1	chr7	100499207	100499407	+	1	NA	NA	NA	5949	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.015000	0.527363	
mm_119313.1	chr14	36659023	36659223	+	1	NA	NA	NA	260412	NM_001347503	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.000000	0.482587	-63(CCCTCTAAAAGT,-,0.00),-62(CCTCTAAAAGTG,+,0.00),-36(GACCCTATAAAG,-,0.00),-34(CCCTATAAAGGC,+,0.00),-34(CCCTATAAAGGC,-,0.00),21(TCTTTTAGGCTC,+,0.00)
mm_59804.1	chr7	29137536	29137736	+	1	NA	NA	NA	2703	NR_045676	233046	Mm.465324	NM_145149	ENSMUSG00000030589	Rasgrp4	-	RAS guanyl releasing protein 4	protein-coding	0.050000	0.597015	
mm_85152.1	chr9	96332940	96333140	-	1	NA	NA	NA	31259	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.015000	0.447761	
mm_128284.1	chr15	37007292	37007492	-	1	NA	NA	NA	10	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.155000	0.781095	
mm_91815.1	chr10	54075610	54075810	-	1	NA	NA	NA	86	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.145000	0.716418	
mm_66885.1	chr7	59228440	59228640	-	1	NA	NA	NA	-210	NM_173010	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|mKIAA4216	ubiquitin protein ligase E3A	protein-coding	0.050000	0.601990	
mm_26354.1	chr3	142548876	142549076	+	1	NA	NA	NA	-11076	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.000000	0.308458	29(GCTTTTAGAGCA,+,0.00)
mm_35074.1	chr4	6989560	6989760	-	1	NA	NA	NA	1063	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.030000	0.537313	
mm_7700.1	chr1	130422653	130422853	-	1	NA	NA	NA	290	NM_007827	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	0.020000	0.592040	
mm_9363.1	chr1	172198450	172198650	-	1	NA	NA	NA	8254	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.030000	0.577114	
mm_16801.1	chr2	10119440	10119640	-	1	NA	NA	NA	11143	NM_010582	16425	Mm.182043	NM_010582	ENSMUSG00000037254	Itih2	AI747202|Intin2|Itih-2	inter-alpha trypsin inhibitor, heavy chain 2	protein-coding	0.015000	0.532338	
mm_145037.1	chr18	39362828	39363028	+	1	NA	NA	NA	124317	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.010000	0.542289	
mm_125480.1	chr15	54595089	54595289	+	1	NA	NA	NA	23823	NM_178920	105853	Mm.410994	NM_178920	ENSMUSG00000024479	Mal2	AI461653	mal, T cell differentiation protein 2	protein-coding	0.015000	0.393035	
mm_172036.1	chr6	125191431	125191631	-	1	NA	NA	NA	55	NM_146171	68298	Mm.257590	NM_146171	ENSMUSG00000038252	Ncapd2	2810406C15Rik|2810465G24Rik|CAP-D2|CNAP1|mKIAA0159	non-SMC condensin I complex, subunit D2	protein-coding	0.065000	0.572139	
mm_100595.1	chr11	120991289	120991489	+	1	NA	NA	NA	-56	NM_027874	104318	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0.065000	0.621891	
mm_148134.1	chr18	75697568	75697768	-	1	NA	NA	NA	28	NM_201354	269037	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0.040000	0.577114	
mm_49986.1	chr6	41033061	41033261	+	1	NA	NA	NA	2348	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.417910	
mm_95145.1	chr11	35544412	35544612	+	1	NA	NA	NA	-72304	NR_029799	723924		NR_029799	ENSMUSG00000065583	Mir218-2	Mirn218-2|mir-218-2	microRNA 218-2	ncRNA	0.035000	0.492537	
mm_157014.1	chrX	7680917	7681117	-	1	NA	NA	NA	72	NM_018832	54634	Mm.67912	NM_018832	ENSMUSG00000031147	Magix	Pdzx|Sfc18	MAGI family member, X-linked	protein-coding	0.040000	0.616915	
mm_2710.1	chr1	128103282	128103482	+	1	NA	NA	NA	76	NM_181750	226412	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	0.115000	0.701493	
mm_10108.1	chr2	3664434	3664634	+	1	NA	NA	NA	-48924	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.015000	0.532338	
mm_146905.1	chr18	31316865	31317065	-	1	NA	NA	NA	163	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding	0.030000	0.502488	
mm_152592.1	chr19	11604754	11604954	-	1	NA	NA	NA	-50	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.005000	0.447761	
mm_1056.1	chr1	58846825	58847025	+	1	NA	NA	NA	44423	NM_001080126	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.000000	0.308458	-49(CCCTTTAAACCC,+,0.00)
mm_17865.1	chr2	34851461	34851661	-	1	NA	NA	NA	19401	NM_080554	66998	Mm.270632	NM_080554	ENSMUSG00000026869	Psmd5	1500032A03Rik|AW475925|S5b|W91691|mKIAA0072	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	protein-coding	0.000000	0.348259	
mm_14735.1	chr2	144331381	144331581	+	1	NA	NA	NA	-119	NM_152947	107586	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0.080000	0.646766	
mm_149178.1	chr19	9283148	9283348	+	1	NA	NA	NA	-147682	NM_025610	66514	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	0.050000	0.522388	
mm_59251.1	chr7	24824663	24824863	+	1	NA	NA	NA	5968	NR_045096	545936	Mm.376228	NR_045096	ENSMUSG00000011350	Gm5893	EG545936|Gm477	predicted gene 5893	pseudo	0.015000	0.482587	45(CCTCTTAGACAC,+,0.00)
mm_135652.1	chr16	52396185	52396385	-	1	NA	NA	NA	56796	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.343284	-3(TGTTCTAAAAGG,-,0.00)
mm_64594.1	chr7	3201163	3201363	-	1	NA	NA	NA	-17363	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.015000	0.507463	
mm_118104.1	chr13	103920392	103920592	-	1	NA	NA	NA	94	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.085000	0.656716	
mm_143747.1	chr17	81520439	81520639	-	1	NA	NA	NA	217848	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.010000	0.407960	-34(GCTTTTCAAGAG,+,0.00)
mm_148969.1	chr19	7536803	7537003	+	1	NA	NA	NA	-20556	NM_139269	225845	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.005000	0.417910	
mm_134392.1	chr16	17405783	17405983	-	1	NA	NA	NA	-117	NM_023348	67474	Mm.271992	NM_023348	ENSMUSG00000022765	Snap29	1300018G05Rik|AI891940|AU020222|BB131856|Gs32	synaptosomal-associated protein 29	protein-coding	0.090000	0.746269	
mm_51639.1	chr6	85961638	85961838	+	1	NA	NA	NA	-71	NM_028099	72102	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	0.095000	0.587065	
mm_31636.1	chr4	59438064	59438264	+	1	NA	NA	NA	469	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.115000	0.706468	
mm_54480.1	chr6	35100871	35101071	-	1	NA	NA	NA	32766	NM_001164412	53621	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0.010000	0.393035	
mm_82455.1	chr9	15627727	15627927	-	1	NA	NA	NA	106	NM_181816	234964	Mm.32237	NM_181816	ENSMUSG00000039977	Ccdc67	4933401K09Rik|Deup1	coiled-coil domain containing 67	protein-coding	0.050000	0.686567	
mm_102439.1	chr11	59526540	59526740	-	1	NA	NA	NA	-16046	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.030000	0.557214	
mm_78378.1	chr9	27790885	27791085	+	1	NA	NA	NA	-284	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.040000	0.616915	
mm_106134.1	chr11	116466150	116466350	-	1	NA	NA	NA	-11903	NM_001033267	217341	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0.060000	0.611940	
mm_74200.1	chr8	123891833	123892033	+	1	NA	NA	NA	2842	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.095000	0.552239	
mm_8947.1	chr1	164438361	164438561	-	1	NA	NA	NA	19894	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.045000	0.522388	
mm_116990.1	chr13	56482157	56482357	-	1	NA	NA	NA	-11	NM_008373	16198	Mm.3006	NM_008373	ENSMUSG00000021538	Il9	Il-9|P40	interleukin 9	protein-coding	0.010000	0.472637	
mm_159129.1	chr2	74705488	74705688	+	1	NA	NA	NA	99	NM_008276	15437	Mm.280673	NM_008276	ENSMUSG00000027102	Hoxd8	4921540P06Rik|AI047735|Hox-4.3|Hox-5.4	homeobox D8	protein-coding	0.170000	0.731343	
mm_37111.1	chr4	116640976	116641176	-	1	NA	NA	NA	10598	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.010000	0.512438	
mm_97474.1	chr11	78322974	78323174	+	1	NA	NA	NA	1	NM_001303423	11676	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0.040000	0.601990	
mm_168887.1	chr1	24612598	24612798	-	1	NA	NA	NA	-25261	NM_007733	12823	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.010000	0.333333	
mm_87806.1	chr10	60300729	60300929	+	1	NA	NA	NA	16368	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.552239	-36(CTGCCTATAAGC,-,0.00)
mm_80218.1	chr9	72532708	72532908	+	1	NA	NA	NA	568	NM_001033536	319758	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	0.055000	0.691542	
mm_56240.1	chr6	90689673	90689873	-	1	NA	NA	NA	26756	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.020000	0.537313	
mm_76422.1	chr8	84977426	84977626	-	1	NA	NA	NA	1222	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.085000	0.641791	
mm_171598.1	chr4	147702556	147702756	-	1	NA	NA	NA	-25	NM_001127188	100503584	Mm.276881	NM_001127188	ENSMUSG00000062518	Zfp534	Gm13159|OTTMUSG00000010681	zinc finger protein 534	protein-coding	0.015000	0.477612	
mm_109129.1	chr12	105837143	105837343	+	1	NA	NA	NA	52546	NM_001347440	18789	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0.020000	0.358209	
mm_94468.1	chr11	6476068	6476268	+	1	NA	NA	NA	-92	NM_011221	19291	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0.145000	0.726368	
mm_60834.1	chr7	45717942	45718142	+	1	NA	NA	NA	-29	NM_009077	19899	Mm.3459	NM_009077	ENSMUSG00000059070	Rpl18	L18|Rpl18a	ribosomal protein L18	protein-coding	0.115000	0.626866	
mm_90590.1	chr10	128277288	128277488	+	1	NA	NA	NA	6812	NM_019963	20847	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	0.010000	0.502488	
mm_113723.1	chr13	43785086	43785286	+	1	NA	NA	NA	74	NM_001289915	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.120000	0.731343	
mm_36072.1	chr4	57956191	57956391	-	1	NA	NA	NA	120	NM_011660	22166	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.110000	0.656716	-34(TTCTATAAAGAG,-,0.00)
mm_122160.1	chr14	31391662	31391862	-	1	NA	NA	NA	25915	NM_001347585	24056	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.015000	0.487562	-27(GACCTTAAATAG,-,0.00),-25(CCTTAAATAGCA,+,0.00)
mm_34588.1	chr4	150187347	150187547	+	1	NA	NA	NA	13688	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.020000	0.442786	
mm_45064.1	chr5	43233736	43233936	-	1	NA	NA	NA	373	NM_001177379	231207	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.090000	0.731343	
mm_84357.1	chr9	64704501	64704701	-	1	NA	NA	NA	33155	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.020000	0.482587	
mm_113921.1	chr13	49582533	49582733	+	1	NA	NA	NA	-114	NM_012050	27047	Mm.390589	NM_012050	ENSMUSG00000048368	Omd	OSAD|SLRR2C	osteomodulin	protein-coding	0.000000	0.333333	
mm_41717.1	chr5	102070745	102070945	+	1	NA	NA	NA	-924	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.015000	0.402985	
mm_152139.1	chr19	7089505	7089705	-	1	NA	NA	NA	16124	NM_201411	396184	Mm.386930	NM_201411	ENSMUSG00000047787	Flrt1	AW742165|D630040I23Rik	fibronectin leucine rich transmembrane protein 1	protein-coding	0.005000	0.412935	
mm_12093.1	chr2	60367523	60367723	+	1	NA	NA	NA	15608	NM_013825	17076	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	0.010000	0.527363	
mm_20793.1	chr2	144253654	144253854	-	1	NA	NA	NA	12448	NR_030762	100313519	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.010000	0.393035	
mm_31449.1	chr4	48610345	48610545	+	1	NA	NA	NA	25252	NM_021436	230157	Mm.422686	NM_021436	ENSMUSG00000028347	Tmeff1	A830033E11|M7365|Tr1	transmembrane protein with EGF-like and two follistatin-like domains 1	protein-coding	0.020000	0.487562	
mm_90173.1	chr10	119549375	119549575	+	1	NA	NA	NA	95441	NM_001277293	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding	0.015000	0.323383	12(CTCTATATAGCC,+,0.00)
mm_118406.1	chr13	119409355	119409555	-	1	NA	NA	NA	-198	NM_001308506	18115	Mm.132584	NM_008710	ENSMUSG00000025453	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.040000	0.452736	
mm_39185.1	chr4	155785802	155786002	-	1	NA	NA	NA	-28	NM_001033394	320587	Mm.384382	NM_001033394	ENSMUSG00000073680	Tmem88b	A230069A22Rik	transmembrane protein 88B	protein-coding	0.015000	0.542289	
mm_101615.1	chr11	35834424	35834624	-	1	NA	NA	NA	4	NM_025936	104458	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.075000	0.606965	
mm_163240.1	chr11	104637458	104637658	+	1	NA	NA	NA	29558	NM_016780	16416	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding	0.005000	0.507463	
mm_157025.1	chrX	7898788	7898988	-	1	NA	NA	NA	112	NM_001252528	54633	Mm.14616	NM_019478	ENSMUSG00000031157	Pqbp1	PQBP-1|Sfc2|npw38	polyglutamine binding protein 1	protein-coding	0.020000	0.507463	
mm_46858.1	chr5	113772571	113772771	-	1	NA	NA	NA	-141	NM_025526	66383	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0.125000	0.666667	
mm_101635.1	chr11	36432736	36432936	-	1	NA	NA	NA	-452747	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.020000	0.467662	
mm_111139.1	chr12	81663900	81664100	-	1	NA	NA	NA	32751	NM_001033149	69480	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	0.020000	0.547264	
mm_17174.1	chr2	25319099	25319299	-	1	NA	NA	NA	-12	NM_001177656	14810	Mm.278672	NM_008169	ENSMUSG00000026959	Grin1	GluN1|GluRdelta1|GluRzeta1|M100174|NMD-R1|NMDAR1|NR1|Nmdar|Rgsc174	glutamate receptor, ionotropic, NMDA1 (zeta 1)	protein-coding	0.155000	0.691542	
mm_78587.1	chr9	37367542	37367742	+	1	NA	NA	NA	36	NM_175189	72927	Mm.266133	NM_175189	ENSMUSG00000046240	Hepacam	2900042E01Rik|Glialcam|Hepn1	hepatocyte cell adhesion molecule	protein-coding	0.030000	0.547264	
mm_5073.1	chr1	3489051	3489251	-	1	NA	NA	NA	182347	NM_001011874	497097	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.010000	0.412935	
mm_16655.1	chr2	6549862	6550062	-	1	NA	NA	NA	171700	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.000000	0.432836	
mm_159337.1	chr3	54735259	54735459	-	1	NA	NA	NA	5	NM_027148	69639	Mm.29253	NM_027148	ENSMUSG00000027752	Exosc8	2310032N20Rik|CIP3|mKIAA4013	exosome component 8	protein-coding	0.105000	0.691542	
mm_35052.1	chr4	6355249	6355449	-	1	NA	NA	NA	-10331	NM_016807	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.015000	0.447761	
mm_109296.1	chr12	109559695	109559895	+	1	NA	NA	NA	-3897	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.035000	0.532338	
mm_128260.1	chr15	36771264	36771464	-	1	NA	NA	NA	19568	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.005000	0.402985	
mm_56855.1	chr6	118166339	118166539	-	1	NA	NA	NA	-27299	NM_030165	78752	Mm.300317	NM_030165	ENSMUSG00000042042	Csgalnact2	4632415D10Rik|Galnact2	chondroitin sulfate N-acetylgalactosaminyltransferase 2	protein-coding	0.000000	0.487562	
mm_50332.1	chr6	48412928	48413128	+	1	NA	NA	NA	17442	NM_001347153	77827	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	0.015000	0.532338	
mm_18645.1	chr2	69533543	69533743	-	1	NA	NA	NA	52424	NM_001081088	14725	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	0.010000	0.393035	
mm_45577.1	chr5	73647615	73647815	-	1	NA	NA	NA	16	NM_011890	24051	Mm.89310	NM_011890	ENSMUSG00000029156	Sgcb	43kDa|AI747103|AI844814|beta-SG	sarcoglycan, beta (dystrophin-associated glycoprotein)	protein-coding	0.120000	0.746269	
mm_71951.1	chr8	70493062	70493262	+	1	NA	NA	NA	31	NM_018827	12931	Mm.335584	NM_018827	ENSMUSG00000007888	Crlf1	CLF-1|CRLM-3|CRLM3|NR6|NR6.1	cytokine receptor-like factor 1	protein-coding	0.130000	0.756219	
mm_71412.1	chr8	46472277	46472477	+	1	NA	NA	NA	1340	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.005000	0.398010	
mm_94889.1	chr11	28712237	28712437	+	1	NA	NA	NA	30773	NR_045906	72818	Mm.410846	NR_045906	ENSMUSG00000084966	2810471M01Rik	-	RIKEN cDNA 2810471M01 gene	ncRNA	0.000000	0.358209	
mm_1397.1	chr1	67136656	67136856	+	1	NA	NA	NA	13729	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.020000	0.432836	
mm_1084.1	chr1	59548741	59548941	+	1	NA	NA	NA	32577	NM_001013771	381260	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0.000000	0.447761	
mm_49873.1	chr6	38576939	38577139	+	1	NA	NA	NA	21316	NM_001331223	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.000000	0.308458	
mm_123778.1	chr14	70323675	70323875	-	1	NA	NA	NA	24658	NM_001135152	213053	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0.030000	0.582090	-47(TCTTTAATGGGC,+,0.00)
mm_146028.1	chr18	69521230	69521430	+	1	NA	NA	NA	175609	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.025000	0.492537	10(GCATCTAAAAGA,-,0.00)
mm_43339.1	chr5	135089790	135089990	+	1	NA	NA	NA	-11624	NM_001199677	194309	Mm.44356	NM_177574	ENSMUSG00000043614	Vps37d	Wbscr24	vacuolar protein sorting 37D	protein-coding	0.095000	0.706468	-1(CAGTCTAAAAGC,-,0.00)
mm_41294.1	chr5	90464003	90464203	+	1	NA	NA	NA	3233	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.487562	
mm_7912.1	chr1	133689994	133690194	-	1	NA	NA	NA	14	NM_001159649	240754	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	0.030000	0.552239	
mm_125137.1	chr15	30485772	30485972	+	1	NA	NA	NA	313279	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.000000	0.353234	
mm_149190.1	chr19	9939082	9939282	+	1	NA	NA	NA	-39649	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.020000	0.562189	-37(CCTCATATAGGT,+,0.00)
mm_8903.1	chr1	163304419	163304619	-	1	NA	NA	NA	9131	NM_011127	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.010000	0.338308	
mm_125383.1	chr15	40655215	40655415	+	1	NA	NA	NA	273	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding	0.065000	0.631841	
mm_40557.1	chr5	59771096	59771296	+	1	NA	NA	NA	214806	NR_040683	71057	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.005000	0.338308	
mm_60008.1	chr7	30729503	30729703	+	1	NA	NA	NA	-69	NM_027215	69804	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	0.090000	0.646766	
mm_119550.1	chr14	48553162	48553362	+	1	NA	NA	NA	106910	NR_132324	218989	Mm.85211	NM_172600	ENSMUSG00000036339	Tmem260	5930435P15|6720456H20Rik	transmembrane protein 260	protein-coding	0.010000	0.492537	
mm_142143.1	chr17	35980116	35980316	-	1	NA	NA	NA	261	NM_008136	14670	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	0.110000	0.746269	
mm_36298.1	chr4	66404420	66404620	-	1	NA	NA	NA	-37	NM_207109	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding	0.105000	0.746269	
mm_51543.1	chr6	83206024	83206224	+	1	NA	NA	NA	20178	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.005000	0.522388	-91(CCTTTTCAGGAG,+,0.00)
mm_70639.1	chr8	13907682	13907882	+	1	NA	NA	NA	-24	NM_025785	66822	Mm.37950	NM_025785	ENSMUSG00000038365	Fbxo25	9130015I06Rik|AI649137|Fbx25	F-box protein 25	protein-coding	0.105000	0.681592	
mm_65209.1	chr7	19697524	19697724	-	1	NA	NA	NA	774	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.030000	0.572139	
mm_116009.1	chr13	24613564	24613764	-	1	NA	NA	NA	-942	NM_001286101	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.005000	0.517413	35(GCTTTTCTAGAG,+,0.00)
mm_36302.1	chr4	68937615	68937815	-	1	NA	NA	NA	16682	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.000000	0.233831	
mm_167982.1	chrX	164437988	164438188	+	1	NA	NA	NA	1094	NM_001313737	68854	Mm.33225	NM_026853	ENSMUSG00000031382	Asb11	1110067L12Rik|1600009D24Rik	ankyrin repeat and SOCS box-containing 11	protein-coding	0.015000	0.402985	
mm_111514.1	chr12	99627875	99628075	-	1	NA	NA	NA	-1	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.130000	0.781095	
mm_46595.1	chr5	107731381	107731581	-	1	NA	NA	NA	-5676	NM_001267621	14581	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.010000	0.417910	
mm_159360.1	chr3	86084319	86084519	+	1	NA	NA	NA	-15	NM_001082414	27059	Mm.2454	NM_012059	ENSMUSG00000028082	Sh3d19	AW011754|Kryn	SH3 domain protein D19	protein-coding	0.025000	0.537313	
mm_153542.1	chr19	42052973	42053173	-	1	NA	NA	NA	845	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	0.020000	0.522388	
mm_113882.1	chr13	48969000	48969200	+	1	NA	NA	NA	988	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.010000	0.368159	-17(TTCTTTTAAAGA,-,0.00),-16(TCTTTTAAAGAC,+,0.00)
mm_78929.1	chr9	45079120	45079320	+	1	NA	NA	NA	37	NM_001005421	270152	Mm.190461	NM_001005421	ENSMUSG00000048534	Amica1	AMICA|Crea7|Gm638|Jaml	adhesion molecule, interacts with CXADR antigen 1	protein-coding	0.020000	0.542289	
mm_48380.1	chr5	139771492	139771692	-	1	NA	NA	NA	-3649	NR_106004	102465628		NR_106004	ENSMUSG00000098574	Mir7037	Gm27447|mmu-mir-7037	microRNA 7037	ncRNA	0.050000	0.601990	
mm_116081.1	chr13	28450408	28450608	-	1	NA	NA	NA	260365	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.000000	0.437811	
mm_143895.1	chr17	84676864	84677064	-	1	NA	NA	NA	662	NM_001286005	67470	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP-binding cassette, sub-family G (WHITE), member 8	protein-coding	0.010000	0.388060	
mm_69094.1	chr7	127018487	127018687	-	1	NA	NA	NA	-1235	NM_030240	67278	Mm.345385	NM_030240	ENSMUSG00000030680	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0.005000	0.616915	
mm_125144.1	chr15	30634650	30634850	+	1	NA	NA	NA	-404376	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.025000	0.587065	
mm_34664.1	chr4	150867192	150867392	+	1	NA	NA	NA	12201	NM_133753	74155	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.015000	0.452736	
mm_2830.1	chr1	131204619	131204819	+	1	NA	NA	NA	-4534	NM_001311094	54354	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.025000	0.462687	
mm_131487.1	chr16	17222274	17222474	+	1	NA	NA	NA	-11213	NM_178922	58180	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0.075000	0.606965	
mm_74452.1	chr8	4214023	4214223	-	1	NA	NA	NA	3189	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.050000	0.557214	
mm_126315.1	chr15	79687838	79688038	+	1	NA	NA	NA	-66	NM_028792	74158	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	0.135000	0.706468	
mm_151631.1	chr19	3918594	3918794	-	1	NA	NA	NA	-5920	NM_001271444	225887	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0.030000	0.572139	
mm_94374.1	chr11	5099568	5099768	+	1	NA	NA	NA	-80	NR_110961	279766	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0.075000	0.666667	
mm_14349.1	chr2	129596113	129596313	+	1	NA	NA	NA	3044	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.010000	0.502488	-6(GCTTTTAGAAGG,+,0.00)
mm_86959.1	chr10	25053187	25053387	+	1	NA	NA	NA	-125817	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.035000	0.427861	
mm_152186.1	chr19	7431930	7432130	-	1	NA	NA	NA	9457	NR_105957	102466781		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	0.010000	0.417910	
mm_16270.1	chr2	173659975	173660175	+	1	NA	NA	NA	230	NM_024436	19334	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	0.115000	0.746269	
mm_83357.1	chr9	44406922	44407122	-	1	NA	NA	NA	526	NM_021789	60409	Mm.29814	NM_021789	ENSMUSG00000032112	Trappc4	1500017G03Rik|AI303617|HSPC172|PTD009|Sbd|Sbdn|Sdcbp2|TRS23	trafficking protein particle complex 4	protein-coding	0.055000	0.636816	
mm_136192.1	chr16	89420031	89420231	-	1	NA	NA	NA	-20	NM_010673	16701	Mm.3524	NM_010673	ENSMUSG00000062433	Krtap6-2	AI646275|HGTpII.4	keratin associated protein 6-2	protein-coding	0.005000	0.398010	-34(CAGTATATAAAG,-,0.00)
mm_28990.1	chr3	101288035	101288235	-	1	NA	NA	NA	-196	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.010000	0.457711	
mm_79141.1	chr9	47655034	47655234	+	1	NA	NA	NA	124782	NM_018770	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.020000	0.467662	
mm_121861.1	chr14	20702878	20703078	-	1	NA	NA	NA	-49	NM_025366	66121	Mm.246996	NM_025366	ENSMUSG00000063787	Chchd1	1110001O19Rik|2400010G13Rik|MRP-S37	coiled-coil-helix-coiled-coil-helix domain containing 1	protein-coding	0.115000	0.651741	
mm_118743.1	chr14	22318617	22318817	+	1	NA	NA	NA	224081	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.015000	0.447761	
mm_131095.1	chr16	4913099	4913299	+	1	NA	NA	NA	-25912	NM_001316715	66911	Mm.428698	NM_025839	ENSMUSG00000022516	Nudt16l1	1110001K21Rik|5330437I08Rik|Sdos	nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 1	protein-coding	0.020000	0.492537	
mm_52651.1	chr6	117559597	117559797	+	1	NA	NA	NA	192072	NR_045731	72263	Mm.443289	NR_045731	ENSMUSG00000099869	1700030F04Rik	-	RIKEN cDNA 1700030F04 gene	ncRNA	0.030000	0.527363	-33(CCACATAAAAGG,-,0.00)
mm_88403.1	chr10	76716176	76716376	+	1	NA	NA	NA	9768	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.035000	0.542289	
mm_28618.1	chr3	95003312	95003512	-	1	NA	NA	NA	-756	NR_105980	102465613		NR_105980	ENSMUSG00000099033	Mir7013	Gm27488|mmu-mir-7013	microRNA 7013	ncRNA	0.000000	0.383085	
mm_70790.1	chr8	22506463	22506663	+	1	NA	NA	NA	-29684	NM_001146117	102032	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	0.035000	0.442786	
mm_32364.1	chr4	105224209	105224409	+	1	NA	NA	NA	66962	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.020000	0.527363	
mm_117395.1	chr13	73678068	73678268	-	1	NA	NA	NA	-145	NM_001168643	22598	Mm.30370	NM_011730	ENSMUSG00000021612	Slc6a18	B0AT3|D630001K16Rik|Xt2|Xtrp2	solute carrier family 6 (neurotransmitter transporter), member 18	protein-coding	0.010000	0.477612	
mm_61497.1	chr7	75753369	75753569	+	1	NA	NA	NA	-94869	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.035000	0.507463	
mm_34267.1	chr4	141421788	141421988	+	1	NA	NA	NA	1109	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.040000	0.601990	
mm_128411.1	chr15	44748303	44748503	-	1	NA	NA	NA	269	NM_001285840	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding	0.125000	0.741294	
mm_57559.1	chr6	126966688	126966888	-	1	NA	NA	NA	26822	NM_138594	28040	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	0.015000	0.412935	
mm_149490.1	chr19	11818010	11818210	+	1	NA	NA	NA	1293	NM_001286543	20908	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.025000	0.482587	
mm_81583.1	chr9	110422444	110422644	+	1	NA	NA	NA	2736	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.000000	0.517413	
mm_69383.1	chr7	131329363	131329563	-	1	NA	NA	NA	36	NM_027037	69318	Mm.233840	NM_027037	ENSMUSG00000030858	1700007K09Rik	-	RIKEN cDNA 1700007K09 gene	protein-coding	0.010000	0.398010	
mm_105211.1	chr11	102163060	102163260	-	1	NA	NA	NA	-6753	NM_029649	76547	Mm.46529	NM_029649	ENSMUSG00000020921	Tmem101	2610511E22Rik	transmembrane protein 101	protein-coding	0.025000	0.562189	
mm_163903.1	chr14	30485003	30485203	+	1	NA	NA	NA	5538	NM_133761	75901	Mm.28733	NM_133761	ENSMUSG00000021962	Dcp1a	1110066A22Rik|4930568L04Rik|AU019772|D14Ertd817e|Mitc1|SMIF	decapping mRNA 1A	protein-coding	0.010000	0.472637	
mm_166793.1	chr6	146850072	146850272	+	1	NA	NA	NA	62	NM_027059	69371	Mm.252733	NM_027059	ENSMUSG00000030292	Smco2	1700023A16Rik	single-pass membrane protein with coiled-coil domains 2	protein-coding	0.015000	0.532338	
mm_131405.1	chr16	14398187	14398387	+	1	NA	NA	NA	36729	NM_008576	17250	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.010000	0.363184	
mm_139902.1	chr17	70858494	70858694	+	1	NA	NA	NA	-5062	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.005000	0.393035	
mm_113536.1	chr13	37848612	37848812	+	1	NA	NA	NA	21319	NM_001039188	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.010000	0.407960	-100(GCCCCTAAAAAG,-,0.00),-54(GCTCATAAGGCC,+,0.00)
mm_56434.1	chr6	97354080	97354280	-	1	NA	NA	NA	-101400	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.020000	0.567164	
mm_82901.1	chr9	32731832	32732032	-	1	NA	NA	NA	35890	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.030000	0.532338	
mm_139280.1	chr17	48247724	48247924	+	1	NA	NA	NA	95	NM_021407	58218	Mm.302438	NM_021407	ENSMUSG00000041754	Trem3	BB134760	triggering receptor expressed on myeloid cells 3	protein-coding	0.015000	0.572139	
mm_157695.1	chrX	60426453	60426653	-	1	NA	NA	NA	-22572	NM_001037863	320940	Mm.490394	NM_001001798	ENSMUSG00000062949	Atp11c	A330005H02Rik|AI315324|Ig	ATPase, class VI, type 11C	protein-coding	0.025000	0.472637	
mm_102753.1	chr11	67297647	67297847	-	1	NA	NA	NA	20623	NM_177369	17885	Mm.340163	NM_177369	ENSMUSG00000055775	Myh8	4832426G23Rik|AI327267|MHCp|MyHC-pn|Myhs-p|Myhsp	myosin, heavy polypeptide 8, skeletal muscle, perinatal	protein-coding	0.015000	0.427861	
mm_34743.1	chr4	152274112	152274312	+	1	NA	NA	NA	-150	NM_178406	100129	Mm.23235	NM_178406	ENSMUSG00000042804	Gpr153	1110065N12Rik|AI449320|PGR1	G protein-coupled receptor 153	protein-coding	0.145000	0.820896	
mm_8128.1	chr1	136230220	136230420	-	1	NA	NA	NA	3960	NM_028872	67313	Mm.36763	NM_028872	ENSMUSG00000041605	5730559C18Rik	1700034M08Rik|4933426C09Rik|AI586180|D1Mgi54	RIKEN cDNA 5730559C18 gene	protein-coding	0.030000	0.626866	
mm_47843.1	chr5	134314557	134314757	-	1	NA	NA	NA	103	NM_001080746	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.070000	0.631841	
mm_134275.1	chr16	13987133	13987333	-	1	NA	NA	NA	-366	NM_001270718	74482	Mm.484026	NM_028968	ENSMUSG00000065968	Ifitm7	4933438K12Rik|Mil4	interferon induced transmembrane protein 7	protein-coding	0.035000	0.562189	
mm_105303.1	chr11	102579427	102579627	-	1	NA	NA	NA	-408	NR_040286	100040792	Mm.277966	NR_040286	ENSMUSG00000078640	Gm11627	OTTMUSG00000002879	predicted gene 11627	ncRNA	0.045000	0.597015	
mm_7235.1	chr1	93445329	93445529	-	1	NA	NA	NA	272	NM_001301364	110611	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0.130000	0.726368	
mm_147038.1	chr18	34861334	34861534	-	1	NA	NA	NA	227	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.070000	0.681592	
mm_40122.1	chr5	34989441	34989641	+	1	NA	NA	NA	-9537	NM_001163512	71729	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.020000	0.393035	
mm_71817.1	chr8	68886821	68887021	+	1	NA	NA	NA	6366	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.383085	
mm_65016.1	chr7	17094989	17095189	-	1	NA	NA	NA	21049	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.015000	0.432836	
mm_130764.1	chr15	101364504	101364704	-	1	NA	NA	NA	-4748	NR_035462	100316694		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0.015000	0.562189	
mm_113691.1	chr13	43112017	43112217	+	1	NA	NA	NA	-10722	NM_001005748	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.030000	0.522388	
mm_113419.1	chr13	34037514	34037714	+	1	NA	NA	NA	-27	NM_026512	68021	Mm.140243	NM_026512	ENSMUSG00000038286	Bphl	2010012D11Rik|5730533B08Rik|AI115341	biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen)	protein-coding	0.080000	0.646766	
mm_51599.1	chr6	84008449	84008649	+	1	NA	NA	NA	-49	NM_001077694	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.055000	0.606965	
mm_11992.1	chr2	55511444	55511644	+	1	NA	NA	NA	75574	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.000000	0.253731	
mm_19281.1	chr2	89912139	89912339	-	1	NA	NA	NA	-17572	NM_146978	258980	Mm.223370	NM_146978	ENSMUSG00000049149	Olfr1258	MOR232-3	olfactory receptor 1258	protein-coding	0.015000	0.368159	
mm_148863.1	chr19	6408305	6408505	+	1	NA	NA	NA	7822	NM_011242	19395	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.015000	0.582090	
mm_48187.1	chr5	137502319	137502519	-	1	NA	NA	NA	10	NM_028753	74097	Mm.290242	NM_028753	ENSMUSG00000029715	Pop7	0610037N12Rik|AI852017|Rpp20	processing of precursor 7, ribonuclease P family, (S. cerevisiae)	protein-coding	0.120000	0.631841	
mm_5798.1	chr1	52155307	52155507	-	1	NA	NA	NA	35785	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.005000	0.368159	
mm_66382.1	chr7	43979301	43979501	-	1	NA	NA	NA	3340	NM_010116	13648	Mm.440884	NM_010116	ENSMUSG00000059042	Klk1b9	EGF-BP C|Egfbp-3|Egfbp3|KAL|Klk9|kallikrein|mGk-9	kallikrein 1-related peptidase b9	protein-coding	0.025000	0.517413	
mm_102065.1	chr11	52256913	52257113	-	1	NA	NA	NA	25018	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.015000	0.542289	
mm_50796.1	chr6	54264751	54264951	+	1	NA	NA	NA	-7	NM_001311133	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.020000	0.462687	-65(GCCTTTAAGAAG,-,0.00),-64(CCTTTAAGAAGC,+,0.00),40(TCCTTTAAGGAC,+,0.00)
mm_80727.1	chr9	92542335	92542535	+	1	NA	NA	NA	212	NM_001142916	26432	Mm.79983	NM_011961	ENSMUSG00000032374	Plod2	D530025C14Rik|LH2|Plod-2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	protein-coding	0.115000	0.746269	
mm_157584.1	chrX	53057092	53057292	-	1	NA	NA	NA	-2	NR_038184	72575	Mm.59516	NR_038184		C430049B03Rik	2700063P19Rik|9430052C07Rik|mir-322|mir-351|mir-503	RIKEN cDNA C430049B03 gene	ncRNA	0.115000	0.741294	-29(CTTTTTCTAGGG,+,0.00)
mm_66851.1	chr7	50575852	50576052	-	1	NA	NA	NA	-68	NR_045928	73515	Mm.437440	NR_045928	ENSMUSG00000085265	Nell1os	1700081H22Rik	NEL-like 1, opposite strand	ncRNA	0.015000	0.497512	
mm_21751.1	chr2	164828433	164828633	-	1	NA	NA	NA	1	NM_029370	75642	Mm.159541	NM_029370	ENSMUSG00000017767	Spata25	1700020C07Rik|Tsg23	spermatogenesis associated 25	protein-coding	0.020000	0.507463	
mm_102113.1	chr11	53270982	53271182	-	1	NA	NA	NA	29397	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.000000	0.398010	
mm_3028.1	chr1	133667916	133668116	+	1	NA	NA	NA	-6617	NM_144530	70579	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	0.030000	0.492537	
mm_128073.1	chr15	27663260	27663460	-	1	NA	NA	NA	18182	NM_001242424	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.010000	0.457711	
mm_64242.1	chr7	141702485	141702685	+	1	NA	NA	NA	12245	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.015000	0.482587	
mm_168120.1	chr10	18559292	18559492	+	1	NA	NA	NA	-13316	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	0.015000	0.487562	
mm_108439.1	chr12	82339668	82339868	+	1	NA	NA	NA	28419	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.025000	0.532338	
mm_141562.1	chr17	32229353	32229553	-	1	NA	NA	NA	-12467	NR_102329	100043434		NR_102329		Gm4432	-	predicted gene 4432	pseudo	0.015000	0.542289	
mm_29372.1	chr3	108722007	108722207	-	1	NA	NA	NA	192	NM_029522	76123	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0.120000	0.751244	
mm_29686.1	chr3	123034790	123034990	-	1	NA	NA	NA	97	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.025000	0.512438	
mm_33647.1	chr4	133039359	133039559	+	1	NA	NA	NA	27953	NM_146155	230793	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.140000	0.766169	
mm_79516.1	chr9	57528851	57529051	+	1	NA	NA	NA	7719	NM_007747	12858	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.020000	0.432836	
mm_92854.1	chr10	81524286	81524486	-	1	NA	NA	NA	-161	NM_010304	14676	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.015000	0.601990	
mm_98155.1	chr11	87617117	87617317	+	1	NA	NA	NA	53	NM_001045527	327992	Mm.390371	NM_001045527	ENSMUSG00000070345	Hsf5	Gm739|MLZ-220	heat shock transcription factor family member 5	protein-coding	0.115000	0.761194	
mm_10532.1	chr2	16408456	16408656	+	1	NA	NA	NA	52252	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.005000	0.348259	
mm_164684.1	chr17	47521726	47521926	+	1	NA	NA	NA	16775	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.030000	0.601990	
mm_137836.1	chr17	30901719	30901919	+	1	NA	NA	NA	-48	NM_021332	14652	Mm.390969	NM_021332	ENSMUSG00000024027	Glp1r	GLP-1R|GLP1Rc	glucagon-like peptide 1 receptor	protein-coding	0.095000	0.741294	
mm_113504.1	chr13	37580984	37581184	+	1	NA	NA	NA	235739	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.010000	0.487562	
mm_1732.1	chr1	75384576	75384776	+	1	NA	NA	NA	-934	NM_001085370	11790	Mm.275397	NM_007463	ENSMUSG00000026207	Speg	AW125581|Apeg1|BPEG|D1Bwg1450e|SPEGalpha|SPEGbeta|mKIAA1297	SPEG complex locus	protein-coding	0.040000	0.626866	
mm_146798.1	chr18	20682904	20683104	-	1	NA	NA	NA	17754	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.035000	0.517413	
mm_128983.1	chr15	74833633	74833833	-	1	NA	NA	NA	7910	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.010000	0.427861	-49(GTTTATAAAAAG,-,0.00)
mm_32315.1	chr4	103348606	103348806	+	1	NA	NA	NA	-33794	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA	0.000000	0.472637	
mm_89247.1	chr10	87858952	87859152	+	1	NA	NA	NA	0	NM_001111275	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.020000	0.467662	-91(TCTTTTAGGGGG,+,0.00)
mm_128724.1	chr15	64060214	64060414	-	1	NA	NA	NA	134	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.155000	0.741294	-76(CCTTTTATAGCG,+,0.00)
mm_161191.1	chr13	51101243	51101443	+	1	NA	NA	NA	-204	NM_001283029	20729	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0.140000	0.796020	
mm_111548.1	chr12	100978009	100978209	-	1	NA	NA	NA	43659	NR_035421	100316805		NR_035421	ENSMUSG00000080575	Mir1190	Mirn1190|mmu-mir-1190	microRNA 1190	ncRNA	0.025000	0.601990	
mm_15841.1	chr2	164745902	164746102	+	1	NA	NA	NA	-13	NM_133763	76233	Mm.440009	NM_133763	ENSMUSG00000017299	Dnttip1	6430706C13Rik	deoxynucleotidyltransferase, terminal, interacting protein 1	protein-coding	0.150000	0.756219	
mm_132543.1	chr16	37882521	37882721	+	1	NA	NA	NA	14221	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.080000	0.661692	
mm_152738.1	chr19	19001050	19001250	-	1	NA	NA	NA	-33	NM_001289921	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.020000	0.472637	
mm_95575.1	chr11	52405159	52405359	+	1	NA	NA	NA	8831	NM_153117	213673	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.010000	0.398010	
mm_59515.1	chr7	27591529	27591729	+	1	NA	NA	NA	77	NM_001110208	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.065000	0.671642	
mm_52905.1	chr6	122770601	122770801	+	1	NA	NA	NA	-27956	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.010000	0.547264	
mm_169111.1	chr13	44869852	44870052	-	1	NA	NA	NA	132144	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.095000	0.597015	
mm_152439.1	chr19	10738848	10739048	-	1	NA	NA	NA	26	NM_007650	12507	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	0.000000	0.567164	
mm_89085.1	chr10	83590890	83591090	+	1	NA	NA	NA	47049	NM_001033375	319277	Mm.491194	NM_001033375	ENSMUSG00000034560	Washc4	A230046K03Rik|AA589518|Kiaa1033|mKIAA1033	WASH complex subunit 4	protein-coding	0.015000	0.452736	
mm_145260.1	chr18	52565584	52565784	+	1	NA	NA	NA	-35817	NM_001286182	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.010000	0.442786	-33(GCTTATATATGG,+,0.00),-33(GCTTATATATGG,-,0.00)
mm_49042.1	chr6	4760019	4760219	+	1	NA	NA	NA	12813	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.373134	
mm_116465.1	chr13	43480889	43481089	-	1	NA	NA	NA	-16	NM_019930	56705	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.160000	0.800995	
mm_44206.1	chr5	3844934	3845134	-	1	NA	NA	NA	-139	NM_172879	242838	Mm.482273	NM_172879	ENSMUSG00000040367	Lrrd1	4932412H11Rik	leucine rich repeats and death domain containing 1	protein-coding	0.035000	0.572139	
mm_82370.1	chr9	14614800	14615000	-	1	NA	NA	NA	100	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.090000	0.741294	
mm_99986.1	chr11	114710772	114710972	+	1	NA	NA	NA	-16540	NM_001034878	432611	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728	dynein, axonemal, intermediate chain 2	protein-coding	0.050000	0.597015	
mm_108100.1	chr12	74804233	74804433	+	1	NA	NA	NA	372999	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0.015000	0.393035	
mm_139677.1	chr17	57414538	57414738	+	1	NA	NA	NA	55952	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.472637	-43(TCTTTTAGACAG,+,0.00)
mm_3478.1	chr1	150105384	150105584	+	1	NA	NA	NA	5453	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.020000	0.502488	
mm_47088.1	chr5	117305431	117305631	-	1	NA	NA	NA	-13735	NM_001033311	231668	Mm.298603	NM_001033311	ENSMUSG00000066894	Vsig10	-	V-set and immunoglobulin domain containing 10	protein-coding	0.020000	0.472637	
mm_388.1	chr1	34077198	34077398	+	1	NA	NA	NA	-40061	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.050000	0.547264	
mm_32417.1	chr4	107048341	107048541	+	1	NA	NA	NA	18425	NM_025500	56280	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0.010000	0.358209	
mm_136952.1	chr17	14943143	14943343	+	1	NA	NA	NA	59	NM_026451	67912	Mm.390949	NM_026451	ENSMUSG00000050088	1600012H06Rik	-	RIKEN cDNA 1600012H06 gene	protein-coding	0.105000	0.676617	
mm_6275.1	chr1	69682922	69683122	-	1	NA	NA	NA	2938	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.020000	0.407960	
mm_33082.1	chr4	123921405	123921605	+	1	NA	NA	NA	4072	NM_017475	54170	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.005000	0.313433	15(GGGTCTTAAAAG,-,0.00),66(ACTTTTAAAAGC,-,0.00),67(CTTTTAAAAGCA,+,0.00)
mm_97329.1	chr11	77009173	77009373	+	1	NA	NA	NA	10676	NM_010484	15567	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	0.015000	0.532338	
mm_17784.1	chr2	32981947	32982147	-	1	NA	NA	NA	9	NM_019488	56017	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0.080000	0.661692	
mm_34852.1	chr4	155495120	155495320	+	1	NA	NA	NA	3859	NM_001160016	14688	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.015000	0.477612	-30(TAGTTTAAAAGA,-,0.00)
mm_108113.1	chr12	75308562	75308762	+	1	NA	NA	NA	349	NM_023275	80837	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	0.025000	0.601990	
mm_82049.1	chr9	122358797	122358997	+	1	NA	NA	NA	7281	NM_026179	67469	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0.030000	0.407960	
mm_145625.1	chr18	61109572	61109772	+	1	NA	NA	NA	4100	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.025000	0.611940	
mm_73389.1	chr8	105701066	105701266	+	1	NA	NA	NA	18	NM_001286344	56513	Mm.472753	NM_019695	ENSMUSG00000005699	Pard6a	0710008C04Rik|2610010A15Rik|PAR-6A|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40	par-6 family cell polarity regulator alpha	protein-coding	0.075000	0.616915	
mm_36476.1	chr4	82850627	82850827	-	1	NA	NA	NA	8934	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0.015000	0.507463	
mm_56006.1	chr6	86488214	86488414	-	1	NA	NA	NA	-87	NR_040292	381792	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.015000	0.557214	
mm_5353.1	chr1	25273106	25273306	-	1	NA	NA	NA	4748	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding	0.015000	0.358209	
mm_142459.1	chr17	45595755	45595955	-	1	NA	NA	NA	47	NM_001199114	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.075000	0.666667	
mm_50133.1	chr6	41542514	41542714	+	1	NA	NA	NA	20838	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.015000	0.467662	
mm_55414.1	chr6	65024615	65024815	-	1	NA	NA	NA	-17952	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.000000	0.457711	-29(GCTTTTAGATCA,+,0.00)
mm_11401.1	chr2	31488976	31489176	+	1	NA	NA	NA	18768	NR_002687	432466	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.015000	0.422886	
mm_73960.1	chr8	120487532	120487732	+	1	NA	NA	NA	-1234	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.125000	0.791045	
mm_47314.1	chr5	122459414	122459614	-	1	NA	NA	NA	37070	NM_019805	56317	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0.020000	0.507463	
mm_116173.1	chr13	30819708	30819908	-	1	NA	NA	NA	70575	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.015000	0.363184	
mm_76543.1	chr8	88108716	88108916	-	1	NA	NA	NA	-9943	NM_029074	382030	Mm.216574	NM_029074	ENSMUSG00000036810	Cnep1r1	5033428A16Rik|NEP1-R1|Tmem188	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding	0.005000	0.323383	59(GGTTTTTAAAAG,-,0.00),60(GTTTTTAAAAGG,-,0.00)
mm_107766.1	chr12	59129688	59129888	+	1	NA	NA	NA	42	NM_001165254	338320	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.020000	0.462687	
mm_37155.1	chr4	117122234	117122434	-	1	NA	NA	NA	3391	NR_024078	78611	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0.020000	0.532338	
mm_152740.1	chr19	19032146	19032346	-	1	NA	NA	NA	-31129	NM_001289921	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.000000	0.353234	
mm_74674.1	chr8	13974587	13974787	-	1	NA	NA	NA	90	NM_173744	72148	Mm.5727	NM_173744	ENSMUSG00000050052	Tdrp	2610019F03Rik	testis development related protein	protein-coding	0.120000	0.746269	
mm_65407.1	chr7	25237684	25237884	-	1	NA	NA	NA	67	NM_001031667	606496	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	0.120000	0.756219	
mm_51970.1	chr6	91758398	91758598	+	1	NA	NA	NA	48895	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.000000	0.402985	
mm_172138.1	chr6	3552694	3552894	-	1	NA	NA	NA	54401	NM_001167750	73288	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	0.035000	0.562189	
mm_155658.1	chrX	86044109	86044309	+	1	NA	NA	NA	10	NM_028554	73495	Mm.159020	NM_028554	ENSMUSG00000035454	Samt3	1700072E05Rik	spermatogenesis associated multipass transmembrane protein 3	protein-coding	0.000000	0.338308	
mm_38336.1	chr4	137666257	137666457	-	1	NA	NA	NA	1631	NR_138591	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.015000	0.477612	-36(GGACATAAAAGC,-,0.00)
mm_50639.1	chr6	51330558	51330758	+	1	NA	NA	NA	-49052	NR_110455	625167	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	0.005000	0.507463	
mm_73916.1	chr8	119666392	119666592	+	1	NA	NA	NA	127	NM_023395	67866	Mm.87599	NM_023395	ENSMUSG00000023336	Wfdc1	2310058A03Rik|ps20	WAP four-disulfide core domain 1	protein-coding	0.030000	0.606965	
mm_130516.1	chr15	98867329	98867529	-	1	NA	NA	NA	3776	NM_001033276	381022	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.010000	0.542289	
mm_1518.1	chr1	72824392	72824592	+	1	NA	NA	NA	12	NM_008342	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.055000	0.661692	-34(GGCTTTTTAGGA,-,0.00)
mm_87306.1	chr10	42678819	42679019	+	1	NA	NA	NA	3	NM_172416	14628	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0.135000	0.736318	
mm_75096.1	chr8	34107729	34107929	-	1	NA	NA	NA	-15	NM_001293758	22428	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.040000	0.492537	
mm_106917.1	chr12	8219907	8220107	+	1	NA	NA	NA	11880	NM_001167767	68832	Mm.25608	NM_172401	ENSMUSG00000037669	Ldah	1110057K04Rik|mLDAH	lipid droplet associated hydrolase	protein-coding	0.010000	0.492537	
mm_121421.1	chr14	120275573	120275773	+	1	NA	NA	NA	4	NM_175341	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding	0.040000	0.572139	
mm_135826.1	chr16	58507552	58507752	-	1	NA	NA	NA	15660	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.020000	0.398010	
mm_48808.1	chr5	148969792	148969992	-	1	NA	NA	NA	19642	NR_040686	71473	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	0.030000	0.592040	
mm_111220.1	chr12	84546075	84546275	-	1	NA	NA	NA	-23653	NM_007701	12677	Mm.4405	NM_007701	ENSMUSG00000021239	Vsx2	Chx10|Hox-10|Hox10|or	visual system homeobox 2	protein-coding	0.045000	0.592040	
mm_39026.1	chr4	152132253	152132453	-	1	NA	NA	NA	-3428	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.045000	0.626866	
mm_48313.1	chr5	138755322	138755522	-	1	NA	NA	NA	341	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.095000	0.681592	
mm_18018.1	chr2	38511454	38511654	-	1	NA	NA	NA	-143	NM_021606	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.090000	0.666667	55(GACTTTATAAGA,-,0.00)
mm_162065.1	chrX	9885526	9885726	+	1	NA	NA	NA	5	NM_001290728	236643	Mm.246606	NM_177704	ENSMUSG00000054453	Sytl5	ENSMUSG00000054453|slp5	synaptotagmin-like 5	protein-coding	0.010000	0.383085	
mm_134440.1	chr16	18247312	18247512	-	1	NA	NA	NA	1282	NM_011239	19385	Mm.235287	NM_011239	ENSMUSG00000005732	Ranbp1	Htf9a	RAN binding protein 1	protein-coding	0.030000	0.487562	
mm_12102.1	chr2	61578437	61578637	+	1	NA	NA	NA	-49	NM_011529	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.010000	0.452736	
mm_55502.1	chr6	69776238	69776438	-	1	NA	NA	NA	-449164	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.383085	-95(TCTTATAAAGTC,+,0.00)
mm_154174.1	chr19	58730473	58730673	-	1	NA	NA	NA	1686	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.010000	0.492537	
mm_25218.1	chr3	103851174	103851374	+	1	NA	NA	NA	-8521	NR_104070	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.015000	0.457711	
mm_18055.1	chr2	39226154	39226354	-	1	NA	NA	NA	84	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding	0.115000	0.631841	
mm_26962.1	chr3	21988202	21988402	-	1	NA	NA	NA	-88350	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.030000	0.492537	
mm_55488.1	chr6	69378422	69378622	-	1	NA	NA	NA	-51348	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.348259	-96(GTGTTTATAAGC,-,0.00)
mm_35297.1	chr4	22486627	22486827	-	1	NA	NA	NA	1639	NM_008899	18992	Mm.129387	NM_008899	ENSMUSG00000095139	Pou3f2	9430075J19Rik|A230098E07Rik|Brn-2|Brn2|OTF-7|Otf7|oct-7	POU domain, class 3, transcription factor 2	protein-coding	0.025000	0.462687	62(CCTTAAAAAAGG,+,0.00)
mm_65206.1	chr7	19697413	19697613	-	1	NA	NA	NA	885	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.030000	0.597015	
mm_56920.1	chr6	119399020	119399220	-	1	NA	NA	NA	18363	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.010000	0.278607	-85(CCTTATATATTA,+,0.00)
mm_118003.1	chr13	100552613	100552813	-	1	NA	NA	NA	-215	NM_008756	18260	Mm.4807	NM_008756	ENSMUSG00000021638	Ocln	AI503564|Ocl	occludin	protein-coding	0.075000	0.656716	
mm_150893.1	chr19	45445453	45445653	+	1	NA	NA	NA	81819	NM_001037758	12234	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.010000	0.412935	-93(GCTTTTAGGGAG,+,0.00)
mm_123324.1	chr14	62966086	62966286	-	1	NA	NA	NA	18324	NM_001037751	432867	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0.015000	0.547264	
mm_118881.1	chr14	25869536	25869736	+	1	NA	NA	NA	27481	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.020000	0.562189	
mm_85921.1	chr9	111271480	111271680	-	1	NA	NA	NA	28	NM_026810	17350	Mm.486383	NM_026810	ENSMUSG00000032498	Mlh1	1110035C23Rik|AI317206|AI325952|AI561766	mutL homolog 1	protein-coding	0.080000	0.567164	
mm_71484.1	chr8	46739744	46739944	+	1	NA	NA	NA	99	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.035000	0.447761	
mm_172636.1	chr8	20580037	20580237	+	1	NA	NA	NA	-34790	NM_001270553	100861668	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.005000	0.467662	
mm_148298.1	chr18	82686933	82687133	-	1	NA	NA	NA	5701	NM_177832	329002	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.000000	0.378109	
mm_23135.1	chr3	38485103	38485303	+	1	NA	NA	NA	-387	NM_001167883	99696	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.095000	0.676617	
mm_117338.1	chr13	69534272	69534472	-	1	NA	NA	NA	-508	NM_001169131	210106	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.195000	0.840796	
mm_64708.1	chr7	4628231	4628431	-	1	NA	NA	NA	2151	NM_023440	68255	Mm.389784	NM_023440	ENSMUSG00000045282	Tmem86b	C330014O21Rik	transmembrane protein 86B	protein-coding	0.010000	0.537313	
mm_24150.1	chr3	88340179	88340379	+	1	NA	NA	NA	4019	NM_178246	229512	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.010000	0.298507	
mm_42238.1	chr5	113772707	113772907	+	1	NA	NA	NA	-5	NM_025526	66383	Mm.29497	NM_025526	ENSMUSG00000025825	Iscu	2310020H20Rik|AA407971|Nifu|Nifun	iron-sulfur cluster assembly enzyme	protein-coding	0.180000	0.786070	
mm_22470.1	chr3	5090192	5090392	+	1	NA	NA	NA	-128262	NM_030708	80892	Mm.41522	NM_030708	ENSMUSG00000025255	Zfhx4	A930021B15|C130041O22Rik|Zfh-4|Zfh4	zinc finger homeodomain 4	protein-coding	0.010000	0.457711	
mm_72962.1	chr8	92827353	92827553	+	1	NA	NA	NA	156	NM_008610	17390	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	0.045000	0.597015	
mm_143471.1	chr17	71127453	71127653	-	1	NA	NA	NA	-56425	NM_022882	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.015000	0.497512	22(ATCTTTTAAAAG,-,0.00),23(TCTTTTAAAAGC,+,0.00),23(TCTTTTAAAAGC,-,0.00),24(CTTTTAAAAGCT,+,0.00)
mm_37555.1	chr4	126162550	126162750	-	1	NA	NA	NA	15	NM_025856	66938	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	0.040000	0.616915	
mm_143513.1	chr17	72918056	72918256	-	1	NA	NA	NA	-149	NM_029999	77889	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.095000	0.666667	
mm_101143.1	chr11	16508019	16508219	-	1	NA	NA	NA	365	NM_011343	20335	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0.050000	0.572139	
mm_79074.1	chr9	46241417	46241617	+	1	NA	NA	NA	673	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.020000	0.527363	
mm_23608.1	chr3	65516029	65516229	+	1	NA	NA	NA	-12318	NM_178892	99929	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	0.000000	0.393035	
mm_125909.1	chr15	76009778	76009978	+	1	NA	NA	NA	-380	NM_001168253	105732	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	0.070000	0.636816	
mm_146478.1	chr18	89197333	89197533	+	1	NA	NA	NA	6	NM_001039149	225825	Mm.139293	NM_178687	ENSMUSG00000034028	Cd226	BC051526|DNAM-1|DNAM1|Pta1|TLiSA1	CD226 antigen	protein-coding	0.015000	0.452736	
mm_131471.1	chr16	17070071	17070271	+	1	NA	NA	NA	32	NM_001291047	106369	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee-like 1 (Drosophila)	protein-coding	0.135000	0.751244	
mm_138371.1	chr17	35001260	35001460	+	1	NA	NA	NA	453	NM_011690	22321	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.090000	0.696517	
mm_92260.1	chr10	70923696	70923896	-	1	NA	NA	NA	235894	NM_031397	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	BicC family RNA binding protein 1	protein-coding	0.000000	0.427861	
mm_137558.1	chr17	27655558	27655758	+	1	NA	NA	NA	67	NM_001286743	23969	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.135000	0.756219	
mm_150557.1	chr19	39330177	39330377	+	1	NA	NA	NA	43192	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.010000	0.378109	
mm_37693.1	chr4	129248365	129248565	-	1	NA	NA	NA	-22	NM_001033189	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.185000	0.850746	
mm_117811.1	chr13	97747279	97747479	-	1	NA	NA	NA	187379	NR_046157	328314	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.030000	0.457711	
mm_133099.1	chr16	64852272	64852472	+	1	NA	NA	NA	287	NM_178647	106143	Mm.10160	NM_178647	ENSMUSG00000054604	Cggbp1	AA960172|AL023996|AW045841	CGG triplet repeat binding protein 1	protein-coding	0.150000	0.830846	
mm_75385.1	chr8	45410276	45410476	-	1	NA	NA	NA	163	NM_126166	142980	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0.040000	0.532338	
mm_153893.1	chr19	46985266	46985466	-	1	NA	NA	NA	-15799	NM_001164365	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.020000	0.577114	
mm_70726.1	chr8	18595065	18595265	+	1	NA	NA	NA	-8	NM_173189	244329	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT	microcephaly, primary autosomal recessive 1	protein-coding	0.110000	0.766169	
mm_124813.1	chr15	8968191	8968391	+	1	NA	NA	NA	342	NM_198024	223332	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0.035000	0.442786	
mm_158307.1	chrX	122397288	122397488	-	1	NA	NA	NA	-3	NM_138742	54561	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	0.045000	0.572139	
mm_82232.1	chr9	3036011	3036211	-	1	NA	NA	NA	2632	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.318408	
mm_105725.1	chr11	109011778	109011978	-	1	NA	NA	NA	91529	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.090000	0.631841	
mm_63100.1	chr7	122562120	122562320	+	1	NA	NA	NA	-109524	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.000000	0.293532	-89(TCTTTTATATAC,+,0.00),0(GCTTTAATAACC,+,0.00)
mm_41495.1	chr5	92323687	92323887	+	1	NA	NA	NA	4292	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.015000	0.383085	-80(ATGTATTAAAGG,-,0.00)
mm_91299.1	chr10	24916022	24916222	-	1	NA	NA	NA	5458	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.035000	0.507463	
mm_18474.1	chr2	62412078	62412278	-	1	NA	NA	NA	53	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.015000	0.517413	
mm_119107.1	chr14	31001295	31001495	+	1	NA	NA	NA	2	NM_001165930	76485	Mm.8766	NM_029626	ENSMUSG00000021916	Glt8d1	2410004H05Rik|5430414N14Rik|AI450005	glycosyltransferase 8 domain containing 1	protein-coding	0.100000	0.651741	
mm_137104.1	chr17	21707685	21707885	+	1	NA	NA	NA	44	NM_001008501	240034	Mm.34723	NM_001008501	ENSMUSG00000067928	Zfp760	9430018I06|BC029103	zinc finger protein 760	protein-coding	0.060000	0.572139	
mm_122207.1	chr14	31830593	31830793	-	1	NA	NA	NA	-278	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.140000	0.741294	
mm_44011.1	chr5	147077465	147077665	+	1	NA	NA	NA	219	NM_009087	20018	Mm.317557	NM_009087	ENSMUSG00000029642	Polr1d	1110003G10Rik|AC19|RPA16|Rpo1-3	polymerase (RNA) I polypeptide D	protein-coding	0.095000	0.686567	
mm_40795.1	chr5	67608280	67608480	+	1	NA	NA	NA	497	NM_001033415	330096	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.130000	0.736318	
mm_78668.1	chr9	40730866	40731066	+	1	NA	NA	NA	45002	NM_133733	71566	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.045000	0.621891	
mm_128283.1	chr15	37007265	37007465	-	1	NA	NA	NA	37	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.165000	0.786070	
mm_99124.1	chr11	100206366	100206566	+	1	NA	NA	NA	-436	NM_001313957	16664	Mm.439898	NM_016958	ENSMUSG00000045545	Krt14	AI626930|CK-14|K14|Krt-1.14|Krt1-14	keratin 14	protein-coding	0.030000	0.532338	
mm_115411.1	chr13	114818168	114818368	+	1	NA	NA	NA	31	NM_001113374	17434	Mm.19027	NM_013826	ENSMUSG00000015536	Mocs2	AI415403	molybdenum cofactor synthesis 2	protein-coding	0.085000	0.641791	
mm_43041.1	chr5	124034697	124034897	+	1	NA	NA	NA	-2537	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.020000	0.462687	
mm_70140.1	chr7	143299748	143299948	-	1	NA	NA	NA	-3301	NR_001461	63830	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.005000	0.567164	
mm_7378.1	chr1	107084036	107084236	-	1	NA	NA	NA	-656	NM_201376	394252	Mm.352392	NM_201376	ENSMUSG00000058017	Serpinb3d	Serpinb3l1	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 3D	protein-coding	0.000000	0.378109	
mm_148618.1	chr19	5405991	5406191	+	1	NA	NA	NA	-724	NR_015545	74931	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	0.020000	0.482587	
mm_160471.1	chr8	117082378	117082578	-	1	NA	NA	NA	-29	NM_029686	76645	Mm.159753	NM_029686	ENSMUSG00000034416	Pkd1l2	1700126L06Rik	polycystic kidney disease 1 like 2	protein-coding	0.015000	0.552239	
mm_1129.1	chr1	60343276	60343476	+	1	NA	NA	NA	76	NM_001313721	77951	Mm.197640	NM_030013	ENSMUSG00000049439	Cyp20a1	A930011N14Rik|Cypm	cytochrome P450, family 20, subfamily a, polypeptide 1	protein-coding	0.120000	0.701493	
mm_115423.1	chr13	117220511	117220711	+	1	NA	NA	NA	38	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.090000	0.706468	
mm_81245.1	chr9	107975403	107975603	+	1	NA	NA	NA	-64	NM_023738	74153	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0.005000	0.477612	
mm_121156.1	chr14	102981211	102981411	+	1	NA	NA	NA	1321	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.035000	0.577114	
mm_150650.1	chr19	41911856	41912056	+	1	NA	NA	NA	85	NM_023418	18648	Mm.16783	NM_023418	ENSMUSG00000011752	Pgam1	2310050F24Rik|Pgam-1	phosphoglycerate mutase 1	protein-coding	0.120000	0.681592	
mm_76971.1	chr8	106282054	106282254	-	1	NA	NA	NA	-75	NR_126091	75044	Mm.445896	NR_126090		4930506A18Rik	-	RIKEN cDNA 4930506A18 gene	ncRNA	0.005000	0.502488	
mm_46318.1	chr5	100643132	100643332	-	1	NA	NA	NA	31024	NM_027978	71883	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0.025000	0.497512	-92(GCTTTTAGGCAG,+,0.00)
mm_83580.1	chr9	48340584	48340784	-	1	NA	NA	NA	214	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.025000	0.467662	-8(CTTTATATAGAA,+,0.00)
mm_89405.1	chr10	90576780	90576980	+	1	NA	NA	NA	189	NM_181398	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.025000	0.477612	
mm_169453.1	chr14	61324883	61325083	-	1	NA	NA	NA	15230	NM_177337	219144	Mm.206566	NM_177337	ENSMUSG00000043157	Arl11	ARLTS1|C730007L20Rik	ADP-ribosylation factor-like 11	protein-coding	0.005000	0.452736	
mm_6680.1	chr1	80574093	80574293	-	1	NA	NA	NA	91159	NM_001285927	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.030000	0.383085	
mm_119382.1	chr14	41136250	41136450	+	1	NA	NA	NA	4562	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.005000	0.283582	
mm_149506.1	chr19	11965599	11965799	+	1	NA	NA	NA	-145	NM_001033174	76303	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.075000	0.592040	
mm_73466.1	chr8	106668521	106668721	+	1	NA	NA	NA	-14447	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.045000	0.527363	
mm_136719.1	chr17	8165476	8165676	+	1	NA	NA	NA	58	NM_201230	75296	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0.135000	0.706468	
mm_51580.1	chr6	83762606	83762806	+	1	NA	NA	NA	60	NM_029245	75305	Mm.391478	NM_029245	ENSMUSG00000014747	Ankrd53	4930564N15Rik	ankyrin repeat domain 53	protein-coding	0.030000	0.462687	
mm_26751.1	chr3	7613652	7613852	-	1	NA	NA	NA	8	NM_008371	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.035000	0.467662	
mm_46061.1	chr5	92262696	92262896	-	1	NA	NA	NA	-9637	NM_011148	19023	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	0.035000	0.512438	
mm_158699.1	chrX	162019365	162019565	-	1	NA	NA	NA	139976	NM_001081052	195727	Mm.336313	NM_001081052	ENSMUSG00000059493	Nhs	Gm389|Gm48|Nhs1|Xcat	Nance-Horan syndrome (human)	protein-coding	0.010000	0.373134	-79(CCCTATAAATAC,-,0.00)
mm_113960.1	chr13	51171146	51171346	+	1	NA	NA	NA	221	NM_029173	75124	Mm.179243	NM_029173	ENSMUSG00000021396	Nxnl2	4930519N16Rik|Rdcvf2	nucleoredoxin-like 2	protein-coding	0.065000	0.656716	
mm_85754.1	chr9	108648967	108649167	-	1	NA	NA	NA	313	NM_011790	23807	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.145000	0.736318	
mm_114156.1	chr13	55402947	55403147	+	1	NA	NA	NA	3399	NM_011392	20505	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	0.030000	0.572139	
mm_29561.1	chr3	116808043	116808243	-	1	NA	NA	NA	23	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.145000	0.810945	
mm_13138.1	chr2	92058654	92058854	+	1	NA	NA	NA	-34584	NM_011957	26427	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.075000	0.626866	
mm_97799.1	chr11	82951978	82952178	+	1	NA	NA	NA	-24	NM_183201	327978	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	0.035000	0.572139	
mm_16162.1	chr2	172455393	172455593	+	1	NA	NA	NA	3103	NM_001039560	654821	Mm.389337	NM_001039560	ENSMUSG00000074569	Gcnt7	A330041C17Rik|gnt	glucosaminyl (N-acetyl) transferase family member 7	protein-coding	0.010000	0.447761	4(GCTTTTATGTTG,+,0.00)
mm_13173.1	chr2	92915025	92915225	+	1	NA	NA	NA	24	NM_030725	80976	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	0.110000	0.726368	
mm_171850.1	chr5	16904565	16904765	+	1	NA	NA	NA	350764	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.015000	0.492537	
mm_125928.1	chr15	76246747	76246947	+	1	NA	NA	NA	40	NM_023168	66168	Mm.41665	NM_023168	ENSMUSG00000022564	Grina	1110025J15Rik|Lag|Tmbim3	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	protein-coding	0.115000	0.726368	
mm_59165.1	chr7	24399540	24399740	+	1	NA	NA	NA	12	NM_028047	71997	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.105000	0.651741	
mm_41280.1	chr5	90366544	90366744	+	1	NA	NA	NA	-353	NR_045618	791294	Mm.30508	NR_045618	ENSMUSG00000054945	Gm9958	ENSMUSG00000054945	predicted gene 9958	ncRNA	0.125000	0.726368	
mm_140841.1	chr17	23673467	23673667	-	1	NA	NA	NA	-41	NM_181821	353502	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	0.070000	0.572139	
mm_157633.1	chrX	56853718	56853918	-	1	NA	NA	NA	-31493	NM_177293	320923	Mm.186745	NM_177293	ENSMUSG00000067878	Mtap7d3	4933424A10Rik|Map7d3	MAP7 domain containing 3	protein-coding	0.000000	0.412935	-84(TGTCATAAAAGC,-,0.00)
mm_81065.1	chr9	106177988	106178188	+	1	NA	NA	NA	-752	NR_029526	387249		NR_029526	ENSMUSG00000065440	Mirlet7g	Mirnlet7g|let-7g|mmu-let-7g	microRNA let7g	ncRNA	0.010000	0.452736	
mm_15558.1	chr2	158502524	158502724	+	1	NA	NA	NA	12	NM_145635	246747	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	0.015000	0.557214	
mm_116653.1	chr13	49187857	49188057	-	1	NA	NA	NA	410	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.080000	0.686567	
mm_120887.1	chr14	75455838	75456038	+	1	NA	NA	NA	-44	NM_001128093	380918	Mm.484360	NM_001128093	ENSMUSG00000091722	Siah3	Gm912	seven in absentia homolog 3 (Drosophila)	protein-coding	0.040000	0.502488	
mm_87626.1	chr10	57807817	57808017	+	1	NA	NA	NA	13373	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.025000	0.442786	
mm_9069.1	chr1	168293348	168293548	-	1	NA	NA	NA	138721	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.010000	0.432836	
mm_39262.1	chr5	3571476	3571676	+	1	NA	NA	NA	-140	NM_029843	77036	Mm.389069	NM_029843	ENSMUSG00000008307	1700109H08Rik	-	RIKEN cDNA 1700109H08 gene	protein-coding	0.010000	0.457711	
mm_125695.1	chr15	66891322	66891522	+	1	NA	NA	NA	29	NM_018865	22402	Mm.10222	NM_018865	ENSMUSG00000005124	Wisp1	AW146261|CCN4|Elm1	WNT1 inducible signaling pathway protein 1	protein-coding	0.030000	0.572139	
mm_103549.1	chr11	77718563	77718763	-	1	NA	NA	NA	6630	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.010000	0.338308	88(TTTTTAAAAGAC,+,0.00)
mm_41099.1	chr5	87694708	87694908	+	1	NA	NA	NA	4617	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.502488	
mm_80750.1	chr9	95168111	95168311	+	1	NA	NA	NA	239059	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.005000	0.467662	
mm_64538.1	chr7	144175615	144175815	+	1	NA	NA	NA	195	NM_001113373	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.070000	0.651741	
mm_89192.1	chr10	86347414	86347614	+	1	NA	NA	NA	47102	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.005000	0.323383	
mm_135344.1	chr16	43362965	43363165	-	1	NA	NA	NA	57131	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.020000	0.532338	
mm_111079.1	chr12	80168854	80169054	-	1	NA	NA	NA	-36110	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.035000	0.537313	
mm_148159.1	chr18	77687363	77687563	-	1	NA	NA	NA	26547	NM_178670	212163	Mm.23293	NM_178670	ENSMUSG00000047466	8030462N17Rik	Akd2|Ark2N	RIKEN cDNA 8030462N17 gene	protein-coding	0.005000	0.412935	-8(CTTTTTCTAGAC,+,0.00)
mm_23530.1	chr3	60626702	60626902	+	1	NA	NA	NA	125623	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.025000	0.333333	
mm_139365.1	chr17	50698448	50698648	+	1	NA	NA	NA	-133	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.145000	0.666667	
mm_113205.1	chr13	25055870	25056070	+	1	NA	NA	NA	-34	NM_001195617	195208	Mm.284719	NM_177577	ENSMUSG00000035910	Dcdc2a	AW492955|Dcdc2|RU2	doublecortin domain containing 2a	protein-coding	0.110000	0.631841	
mm_102386.1	chr11	58928386	58928586	-	1	NA	NA	NA	10420	NM_022423	108660	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	0.015000	0.497512	-35(GGCCATTTAAGA,-,0.00)
mm_62451.1	chr7	101386693	101386893	+	1	NA	NA	NA	1267	NM_027180	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.020000	0.517413	
mm_57553.1	chr6	126849048	126849248	-	1	NA	NA	NA	-4	NM_025358	66108	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	0.085000	0.582090	
mm_72109.1	chr8	71611155	71611355	+	1	NA	NA	NA	231	NM_146211	234407	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	0.160000	0.736318	
mm_63156.1	chr7	123418186	123418386	+	1	NA	NA	NA	40304	NM_025304	30949	Mm.260527	NM_025304	ENSMUSG00000030763	Lcmt1	AL033290|LCMT-1|Lcmt	leucine carboxyl methyltransferase 1	protein-coding	0.010000	0.467662	
mm_107194.1	chr12	25285002	25285202	+	1	NA	NA	NA	155928	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.020000	0.457711	
mm_170828.1	chr2	176864395	176864595	-	1	NA	NA	NA	-58	NR_040256	626877	Mm.490744	NR_040256		Gm14405	OTTMUSG00000016573	predicted gene 14405	pseudo	0.020000	0.482587	
mm_164777.1	chr18	3280851	3281051	-	1	NA	NA	NA	181	NM_001311066	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.035000	0.477612	
mm_63017.1	chr7	121032682	121032882	+	1	NA	NA	NA	-1663	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.005000	0.437811	60(CTCTATAAAAAG,-,0.00)
mm_77751.1	chr8	128466205	128466405	-	1	NA	NA	NA	107064	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.000000	0.407960	
mm_32216.1	chr4	101647624	101647824	+	1	NA	NA	NA	-59	NM_175036	230514	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0.080000	0.646766	
mm_140438.1	chr17	88479175	88479375	+	1	NA	NA	NA	38563	NM_180974	14236	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.040000	0.527363	
mm_154132.1	chr19	57314768	57314968	-	1	NA	NA	NA	40908	NR_045319	78120	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	0.125000	0.776119	
mm_129242.1	chr15	76656660	76656860	-	1	NA	NA	NA	141	NM_001276321	54151	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0.150000	0.815920	
mm_136046.1	chr16	78546555	78546755	-	1	NA	NA	NA	-13661	NR_040569	75818	Mm.410817	NR_040569		4930478L05Rik	-	RIKEN cDNA 4930478L05 gene	ncRNA	0.020000	0.437811	-59(CCTTTTAAGAAC,+,0.00)
mm_43059.1	chr5	124229628	124229828	+	1	NA	NA	NA	3	NR_045369	75927	Mm.410803	NR_045369	ENSMUSG00000090220	Pitpnm2os1	4930568K20Rik	phosphatidylinositol transfer protein, membrane-associated 2, opposite strand 1	ncRNA	0.005000	0.482587	
mm_35872.1	chr4	49536551	49536751	-	1	NA	NA	NA	12895	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.000000	0.398010	
mm_57841.1	chr6	129465470	129465670	-	1	NA	NA	NA	7209	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.025000	0.442786	26(CCGTATTAATGC,-,0.00)
mm_160979.1	chr11	102365149	102365349	-	1	NA	NA	NA	32	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.020000	0.651741	
mm_126737.1	chr15	85671393	85671593	+	1	NA	NA	NA	-32280	NR_110483	102800312	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0.155000	0.746269	
mm_121570.1	chr14	122876351	122876551	+	1	NA	NA	NA	36714	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.025000	0.492537	
mm_52474.1	chr6	114282687	114282887	+	1	NA	NA	NA	152	NM_178703	232333	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.115000	0.756219	
mm_126984.1	chr15	93996100	93996300	+	1	NA	NA	NA	-69089	NR_045737	77248	Mm.410768	NR_045737		9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	0.005000	0.328358	
mm_135726.1	chr16	55822037	55822237	-	1	NA	NA	NA	1	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.115000	0.701493	
mm_2960.1	chr1	132880255	132880455	+	1	NA	NA	NA	0	NM_010732	16980	Mm.39640	NM_010732	ENSMUSG00000026443	Lrrn2	5730406J09Rik|NLRR-2	leucine rich repeat protein 2, neuronal	protein-coding	0.125000	0.741294	
mm_9791.1	chr1	181820546	181820746	-	1	NA	NA	NA	21755	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.020000	0.323383	
mm_158553.1	chrX	147429091	147429291	-	1	NA	NA	NA	1	NM_001306059	16165	Mm.368330	NM_008356	ENSMUSG00000031289	Il13ra2	CD213a2|IL-13R-alpha-2	interleukin 13 receptor, alpha 2	protein-coding	0.000000	0.388060	87(TCATATAAAGAC,+,0.00)
mm_156489.1	chrX	144335971	144336171	+	1	NA	NA	NA	18105	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.015000	0.482587	
mm_72433.1	chr8	82932353	82932553	+	1	NA	NA	NA	69097	NM_177378	330812	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	0.000000	0.343284	
mm_34035.1	chr4	138147341	138147541	+	1	NA	NA	NA	-8923	NR_126429	73563	Mm.444294	NR_126429	ENSMUSG00000084804	1700095J12Rik	-	RIKEN cDNA 1700095J12 gene	ncRNA	0.010000	0.452736	
mm_117319.1	chr13	67683419	67683619	-	1	NA	NA	NA	-7	NM_001001187	408068	Mm.435551	NM_175676	ENSMUSG00000048280	Zfp738	3830402I07Rik|6720487G11Rik	zinc finger protein 738	protein-coding	0.015000	0.497512	
mm_120438.1	chr14	65837270	65837470	+	1	NA	NA	NA	68	NM_145944	67179	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	0.095000	0.606965	
mm_39390.1	chr5	13399301	13399501	+	1	NA	NA	NA	92	NM_009152	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.045000	0.572139	
mm_128861.1	chr15	72809834	72810034	-	1	NA	NA	NA	390	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.055000	0.547264	-33(GTCTCTAAAGAC,-,0.00)
mm_83312.1	chr9	44047524	44047724	-	1	NA	NA	NA	4240	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.015000	0.532338	
mm_59365.1	chr7	25687543	25687743	+	1	NA	NA	NA	641	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.035000	0.542289	-34(CCCTATTTAAGA,-,0.00)
mm_85560.1	chr9	106891286	106891486	-	1	NA	NA	NA	552	NM_029103	74840	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	0.010000	0.462687	
mm_129061.1	chr15	75567118	75567318	-	1	NA	NA	NA	-36	NM_011837	23934	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	0.040000	0.572139	
mm_138608.1	chr17	35649732	35649932	+	1	NA	NA	NA	124	NM_001163194	433102	Mm.136760	NM_001163194	ENSMUSG00000090509	Sfta2	EG433102	surfactant associated 2	protein-coding	0.015000	0.557214	
mm_107959.1	chr12	72664889	72665089	+	1	NA	NA	NA	-161	NM_025522	66375	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.040000	0.517413	
mm_99794.1	chr11	107479411	107479611	+	1	NA	NA	NA	-17	NM_025894	66997	Mm.491171	NM_025894	ENSMUSG00000020720	Psmd12	1500002F15Rik|AI480719|P55	proteasome (prosome, macropain) 26S subunit, non-ATPase, 12	protein-coding	0.095000	0.701493	
mm_164423.1	chr16	45031039	45031239	-	1	NA	NA	NA	-62914	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.000000	0.417910	
mm_148521.1	chr19	4300535	4300735	+	1	NA	NA	NA	5587	NM_130863	110355	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.010000	0.567164	
mm_172243.1	chr6	69227337	69227537	-	1	NA	NA	NA	99737	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.363184	-92(GTGTTTATAAGC,-,0.00)
mm_107709.1	chr12	55565164	55565364	+	1	NA	NA	NA	59	NM_001277340	79459	Mm.392781	NM_001277340	ENSMUSG00000063129	Aldoart2	4933425L11Rik|Aldo1-ps1|Aldoa-ps1	aldolase 1 A, retrogene 2	protein-coding	0.050000	0.592040	
mm_135103.1	chr16	35490730	35490930	-	1	NA	NA	NA	43	NM_028295	72599	Mm.71015	NM_028295	ENSMUSG00000022844	Pdia5	2700053F16Rik|AU015525|Pdir	protein disulfide isomerase associated 5	protein-coding	0.105000	0.726368	
mm_66058.1	chr7	30744034	30744234	-	1	NA	NA	NA	-453	NM_001290631	14447	Mm.436562	NM_008085	ENSMUSG00000061099	Gapdhs	Gapd-s|Gapds	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein-coding	0.010000	0.477612	
mm_144510.1	chr18	24709172	24709372	+	1	NA	NA	NA	649	NM_001289655	225288	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0.085000	0.666667	
mm_157502.1	chrX	48594338	48594538	-	1	NA	NA	NA	14	NM_001166649	208968	Mm.293819	NM_153532	ENSMUSG00000036916	Zfp280c	BC028839|Suhw3|Zfp633|Znf280c|mKIAA1584	zinc finger protein 280C	protein-coding	0.070000	0.646766	
mm_165076.1	chr19	45545241	45545441	+	1	NA	NA	NA	15223	NM_001330506	56626	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0.030000	0.557214	
mm_164966.1	chr19	6398651	6398851	+	1	NA	NA	NA	-1832	NM_011242	19395	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.075000	0.686567	
mm_141205.1	chr17	27043004	27043204	-	1	NA	NA	NA	13845	NM_027544	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.015000	0.616915	
mm_142707.1	chr17	47878967	47879167	-	1	NA	NA	NA	-44376	NM_001109973	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.030000	0.592040	
mm_85292.1	chr9	100466762	100466962	-	1	NA	NA	NA	19611	NM_001033543	213208	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.000000	0.557214	
mm_138692.1	chr17	35979816	35980016	+	1	NA	NA	NA	-39	NM_008136	14670	Mm.335754	NM_008136	ENSMUSG00000024429	Gnl1	Gna-rs1|Gnal1	guanine nucleotide binding protein-like 1	protein-coding	0.165000	0.781095	
mm_5196.1	chr1	13373553	13373753	-	1	NA	NA	NA	430	NM_008678	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.135000	0.781095	
mm_105783.1	chr11	109797257	109797457	-	1	NA	NA	NA	30689	NM_027038	69324	Mm.31700	NM_027038	ENSMUSG00000020617	1700012B07Rik	1700069D21Rik	RIKEN cDNA 1700012B07 gene	protein-coding	0.035000	0.507463	
mm_169576.1	chr15	22714011	22714211	-	1	NA	NA	NA	873	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding	0.020000	0.472637	
mm_54913.1	chr6	47796145	47796345	-	1	NA	NA	NA	7407	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.005000	0.243781	81(ACTTTAAAAGTC,+,0.00)
mm_85833.1	chr9	110462345	110462545	-	1	NA	NA	NA	14249	NM_177771	270201	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0.025000	0.567164	
mm_113713.1	chr13	43603733	43603933	+	1	NA	NA	NA	-11964	NM_183204	328234	Mm.40588	NM_183204	ENSMUSG00000044164	Rnf182	C630023L15Rik	ring finger protein 182	protein-coding	0.030000	0.567164	
mm_138435.1	chr17	35110586	35110786	+	1	NA	NA	NA	2386	NM_148947	114652	Mm.222643	NM_148947	ENSMUSG00000034482	Ly6g5c	G5c|NG33	lymphocyte antigen 6 complex, locus G5C	protein-coding	0.025000	0.542289	
mm_56893.1	chr6	119108956	119109156	-	1	NA	NA	NA	-561	NM_001256002	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.045000	0.557214	
mm_51039.1	chr6	65597263	65597463	+	1	NA	NA	NA	6965	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.020000	0.537313	
mm_98343.1	chr11	93099145	93099345	+	1	NA	NA	NA	-45	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	0.100000	0.661692	
mm_46176.1	chr5	96922082	96922282	-	1	NA	NA	NA	910	NR_131152	666266	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0.025000	0.507463	
mm_47538.1	chr5	124249670	124249870	-	1	NA	NA	NA	-10	NM_011256	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.190000	0.840796	
mm_84537.1	chr9	67262044	67262244	-	1	NA	NA	NA	-25418	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	0.010000	0.557214	
mm_59183.1	chr7	24462386	24462586	+	1	NA	NA	NA	3	NM_011113	18793	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.030000	0.601990	
mm_1782.1	chr1	78526486	78526686	+	1	NA	NA	NA	15526	NM_026713	68393	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	0.005000	0.452736	
mm_109992.1	chr12	15793071	15793271	-	1	NA	NA	NA	7930	NR_105809	102465204		NR_105809	ENSMUSG00000098480	Mir6387	Gm27281|mmu-mir-6387	microRNA 6387	ncRNA	0.015000	0.358209	
mm_103602.1	chr11	78404497	78404697	-	1	NA	NA	NA	10112	NR_003282	790911	Mm.457257	NR_003282	ENSMUSG00000085747	Slc13a2os	Gm11194|OTTMUSG00000000132	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand	ncRNA	0.020000	0.567164	
mm_164936.1	chr18	84251429	84251629	+	1	NA	NA	NA	163371	NM_146090	225791	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.005000	0.592040	
mm_112601.1	chr13	14161217	14161417	+	1	NA	NA	NA	97533	NM_198122	94246	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.000000	0.333333	68(GCTTATAAAAAG,+,0.00),68(GCTTATAAAAAG,-,0.00)
mm_131373.1	chr16	13863281	13863481	+	1	NA	NA	NA	39764	NM_001039533	94184	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0.015000	0.417910	
mm_153079.1	chr19	32349844	32350044	-	1	NA	NA	NA	-628	NM_001168525	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.015000	0.333333	
mm_38934.1	chr4	150193667	150193867	-	1	NA	NA	NA	7368	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.035000	0.527363	
mm_70841.1	chr8	23411399	23411599	+	1	NA	NA	NA	-3	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding	0.150000	0.756219	
mm_105435.1	chr11	104328140	104328340	-	1	NA	NA	NA	96804	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.010000	0.502488	
mm_84613.1	chr9	70421463	70421663	-	1	NA	NA	NA	-9	NM_007630	12442	Mm.22592	NM_007630	ENSMUSG00000032218	Ccnb2	CycB2	cyclin B2	protein-coding	0.110000	0.636816	
mm_93727.1	chr10	119240043	119240243	-	1	NA	NA	NA	-88	NM_027994	71902	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	0.130000	0.746269	
mm_122921.1	chr14	54960410	54960610	-	1	NA	NA	NA	6097	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.010000	0.502488	
mm_101324.1	chr11	22860381	22860581	-	1	NA	NA	NA	-145	NM_001169114	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.080000	0.651741	
mm_169803.1	chr16	18016806	18017006	+	1	NA	NA	NA	-35954	NM_010047	13353	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0.030000	0.492537	-31(CTTTAAATACCC,+,0.00)
mm_73341.1	chr8	105326330	105326530	+	1	NA	NA	NA	66	NM_025486	66320	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	0.060000	0.552239	
mm_24282.1	chr3	89230218	89230418	+	1	NA	NA	NA	1262	NM_013605	17829	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	0.020000	0.606965	
mm_148834.1	chr19	6343688	6343888	+	1	NA	NA	NA	2628	NR_117093	26412	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0.015000	0.587065	
mm_4618.1	chr1	178798312	178798512	+	1	NA	NA	NA	269287	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.015000	0.606965	
mm_125329.1	chr15	38661809	38662009	+	1	NA	NA	NA	5	NM_025494	66335	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.135000	0.716418	
mm_16019.1	chr2	167503134	167503334	+	1	NA	NA	NA	-10360	NM_170756	263876	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	0.025000	0.552239	
mm_156588.1	chrX	152178898	152179098	+	1	NA	NA	NA	-11	NM_001005475	245666	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	0.005000	0.611940	
mm_80070.1	chr9	69476295	69476495	+	1	NA	NA	NA	19451	NR_037296	100526560		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0.005000	0.348259	
mm_53535.1	chr6	136630169	136630369	+	1	NA	NA	NA	31624	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.000000	0.542289	
mm_109951.1	chr12	11435546	11435746	-	1	NA	NA	NA	1003	NM_012038	26950	Mm.27005	NM_012038	ENSMUSG00000054459	Vsnl1	VILIP|Vnsl1	visinin-like 1	protein-coding	0.020000	0.442786	65(TTGCTTTAAAGG,-,0.00),66(TGCTTTAAAGGA,-,0.00),67(GCTTTAAAGGAG,+,0.00)
mm_75230.1	chr8	39621581	39621781	-	1	NA	NA	NA	20997	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.323383	
mm_81533.1	chr9	110082544	110082744	+	1	NA	NA	NA	18443	NM_001252683	72831	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	0.010000	0.547264	
mm_22493.1	chr3	6107425	6107625	+	1	NA	NA	NA	512918	NM_027048	69347	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	0.015000	0.432836	
mm_88303.1	chr10	75324833	75325033	+	1	NA	NA	NA	75	NM_001331096	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.035000	0.621891	
mm_139790.1	chr17	65885050	65885250	+	1	NA	NA	NA	-227	NM_001198949	19765	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.080000	0.611940	
mm_55618.1	chr6	72234363	72234563	-	1	NA	NA	NA	1114	NM_153778	71093	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0.105000	0.646766	
mm_71494.1	chr8	46766606	46766806	+	1	NA	NA	NA	26961	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.005000	0.482587	
mm_11954.1	chr2	52976844	52977044	+	1	NA	NA	NA	119076	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.015000	0.467662	
mm_90280.1	chr10	122821077	122821277	+	1	NA	NA	NA	141862	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.010000	0.398010	
mm_34066.1	chr4	138454810	138455010	+	1	NA	NA	NA	-238	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.180000	0.810945	
mm_74332.1	chr8	127063807	127064007	+	1	NA	NA	NA	-149	NM_033620	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.140000	0.796020	
mm_163.1	chr1	12744679	12744879	+	1	NA	NA	NA	26234	NM_172294	240725	Mm.45563	NM_172294	ENSMUSG00000016918	Sulf1	AI467640|AW121680|mKIAA1077	sulfatase 1	protein-coding	0.010000	0.507463	
mm_47001.1	chr5	115348625	115348825	-	1	NA	NA	NA	230	NM_007748	12861	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	0.125000	0.736318	
mm_104713.1	chr11	98052908	98053108	-	1	NA	NA	NA	454	NM_146028	217154	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0.060000	0.626866	9(TCCTTTATACCC,+,0.00)
mm_31308.1	chr4	46077087	46077287	+	1	NA	NA	NA	37965	NM_021883	21916	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0.005000	0.447761	-57(TCATAAATAGCC,+,0.00)
mm_167827.1	chr9	124423448	124423648	-	1	NA	NA	NA	-239	NR_102721	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.125000	0.681592	
mm_162345.1	chr1	52119785	52119985	+	1	NA	NA	NA	263	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.050000	0.522388	
mm_38497.1	chr4	141053614	141053814	-	1	NA	NA	NA	-53	NM_172122	230872	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	0.035000	0.582090	
mm_116477.1	chr13	43559761	43559961	-	1	NA	NA	NA	330	NM_001081059	76137	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0.160000	0.771144	
mm_120891.1	chr14	75845017	75845217	+	1	NA	NA	NA	-139	NM_009429	22070	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	0.125000	0.751244	
mm_165463.1	chr2	161354763	161354963	+	1	NA	NA	NA	-245777	NR_126509	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0.005000	0.432836	
mm_131141.1	chr16	6348958	6349158	+	1	NA	NA	NA	373471	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA	0.105000	0.711443	
mm_38280.1	chr4	136889994	136890194	-	1	NA	NA	NA	2820	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.035000	0.592040	
mm_127647.1	chr15	102486158	102486358	+	1	NA	NA	NA	15626	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.020000	0.477612	
mm_25748.1	chr3	123267092	123267292	+	1	NA	NA	NA	-304	NM_027135	69608	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	0.070000	0.616915	
mm_129821.1	chr15	83033203	83033403	-	1	NA	NA	NA	94	NM_001271412	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.030000	0.567164	
mm_114406.1	chr13	64161846	64162046	+	1	NA	NA	NA	80	NM_019986	56541	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	0.155000	0.786070	
mm_144406.1	chr18	20961162	20961362	+	1	NA	NA	NA	16637	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.030000	0.467662	
mm_152143.1	chr19	7198832	7199032	-	1	NA	NA	NA	7352	NM_134150	107260	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	0.020000	0.452736	60(TTTTATTAAAGG,-,0.00)
mm_39641.1	chr5	24586658	24586858	+	1	NA	NA	NA	8	NM_133913	100910	Mm.140672	NM_133913	ENSMUSG00000038181	Chpf2	2010209O12Rik|AW060945|mKIAA1402|mir-671	chondroitin polymerizing factor 2	protein-coding	0.080000	0.671642	
mm_144168.1	chr18	6516142	6516342	+	1	NA	NA	NA	-134	NM_007935	13831	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1 (Drosophila)	protein-coding	0.105000	0.686567	
mm_30852.1	chr4	25340314	25340514	+	1	NA	NA	NA	-58593	NM_026194	67490	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	0.015000	0.462687	
mm_112998.1	chr13	21753975	21754175	+	1	NA	NA	NA	-48	NM_178201	319187		NM_178201	ENSMUSG00000095217	Hist1h2bn	-	histone cluster 1, H2bn	protein-coding	0.035000	0.477612	-32(TTGTTTAAAAGG,-,0.00)
mm_120309.1	chr14	63142190	63142390	+	1	NA	NA	NA	19828	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.452736	
mm_168349.1	chr1	112838015	112838215	+	1	NA	NA	NA	-973197	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0.040000	0.532338	
mm_100984.1	chr11	7213475	7213675	-	1	NA	NA	NA	348	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding	0.180000	0.771144	
mm_27568.1	chr3	58637077	58637277	-	1	NA	NA	NA	30	NM_001081262	545527	Mm.357722	NM_001081262	ENSMUSG00000070471	Erich6	4932431H17Rik|Fam194a	glutamate rich 6	protein-coding	0.060000	0.582090	
mm_151758.1	chr19	5106933	5107133	-	1	NA	NA	NA	-37	NM_029576	76308	Mm.182563	NM_029576	ENSMUSG00000024870	Rab1b	1110011F09Rik	RAB1B, member RAS oncogene family	protein-coding	0.120000	0.681592	
mm_67082.1	chr7	68276159	68276359	-	1	NA	NA	NA	335	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.025000	0.592040	
mm_45335.1	chr5	65697741	65697941	-	1	NA	NA	NA	15	NM_001081321	71521	Mm.278974	NM_027818	ENSMUSG00000029202	Pds5a	9030416H16Rik|E230024D05Rik|mKIAA0648	PDS5 cohesin associated factor A	protein-coding	0.170000	0.800995	
mm_133248.1	chr16	77236220	77236420	+	1	NA	NA	NA	-93008	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.005000	0.507463	
mm_19296.1	chr2	90460641	90460841	-	1	NA	NA	NA	18433	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.015000	0.437811	
mm_88005.1	chr10	67096302	67096502	+	1	NA	NA	NA	586	NM_001204915	28193	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.185000	0.786070	
mm_38176.1	chr4	135264111	135264311	-	1	NA	NA	NA	8549	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.020000	0.452736	
mm_135304.1	chr16	38712640	38712840	-	1	NA	NA	NA	295	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.090000	0.681592	
mm_154907.1	chrX	21146587	21146787	+	1	NA	NA	NA	28273	NM_001205086	385338	Mm.298019	NM_001205086		Ssxa1	Gm1532|Ssxa	synovial sarcoma, X member A1	protein-coding	0.060000	0.611940	
mm_142551.1	chr17	46629268	46629468	-	1	NA	NA	NA	136	NM_175168	71461	Mm.181833	NM_175168	ENSMUSG00000023972	Ptk7	8430404F20Rik|chz|mPTK7/CCK4	PTK7 protein tyrosine kinase 7	protein-coding	0.135000	0.751244	
mm_80464.1	chr9	78113140	78113340	+	1	NA	NA	NA	2	NM_019987	56542	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	0.085000	0.681592	
mm_32418.1	chr4	107049986	107050186	+	1	NA	NA	NA	16780	NM_025500	56280	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0.015000	0.393035	
mm_3160.1	chr1	135231893	135232093	+	1	NA	NA	NA	26479	NM_001163131	13710	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0.065000	0.577114	
mm_83844.1	chr9	54474035	54474235	-	1	NA	NA	NA	27491	NM_172771	235380	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.005000	0.402985	
mm_125418.1	chr15	41830861	41831061	+	1	NA	NA	NA	3	NM_001130164	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.005000	0.417910	
mm_97292.1	chr11	76243651	76243851	+	1	NA	NA	NA	15	NM_183263	67390	Mm.24886	NM_183263	ENSMUSG00000038046	Rnmtl1	4833420N02Rik|AI255153|HC90|Mrm3	RNA methyltransferase like 1	protein-coding	0.105000	0.651741	
mm_137238.1	chr17	24454769	24454969	+	1	NA	NA	NA	523	NM_001301784	13560	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	0.055000	0.641791	
mm_138996.1	chr17	45555697	45555897	+	1	NA	NA	NA	97	NM_001304956	18037	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	0.070000	0.606965	
mm_3621.1	chr1	152750425	152750625	+	1	NA	NA	NA	-26	NM_001081197	71281	Mm.158650	NM_001081197	ENSMUSG00000055547	Apobec4	4933431M11Rik	apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative)	protein-coding	0.010000	0.383085	
mm_8138.1	chr1	136255767	136255967	-	1	NA	NA	NA	5006	NM_001101516	383563	Mm.40367	NM_001101516	ENSMUSG00000052759	Gpr25	Gm1300	G protein-coupled receptor 25	protein-coding	0.020000	0.522388	
mm_108942.1	chr12	102270316	102270516	+	1	NA	NA	NA	-12658	NM_177620	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.000000	0.378109	
mm_143275.1	chr17	65674946	65675146	-	1	NA	NA	NA	-32842	NM_001146002	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.005000	0.512438	
mm_76411.1	chr8	84893794	84893994	-	1	NA	NA	NA	27	NM_001044744	270076	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	0.025000	0.552239	33(CTCTTTTAAAAG,-,0.00),34(TCTTTTAAAAGG,+,0.00),34(TCTTTTAAAAGG,-,0.00),35(CTTTTAAAAGGC,+,0.00)
mm_124076.1	chr14	78629189	78629389	-	1	NA	NA	NA	1	NM_001253766	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.020000	0.522388	-33(GTCTATTTAAGT,-,0.00)
mm_11892.1	chr2	49787585	49787785	+	1	NA	NA	NA	-1	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.165000	0.825871	
mm_35174.1	chr4	15148847	15149047	-	1	NA	NA	NA	184	NM_178617	69352	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	0.075000	0.656716	
mm_157086.1	chrX	9436230	9436430	-	1	NA	NA	NA	32994	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.412935	
mm_95113.1	chr11	34075202	34075402	+	1	NA	NA	NA	28101	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.020000	0.417910	
mm_13925.1	chr2	120850027	120850227	+	1	NA	NA	NA	291	NM_001024857	140810	Mm.275698	NM_080788	ENSMUSG00000090100	Ttbk2	2610507N02Rik|AI326283|B930008N24Rik|TTK|Ttbk|Ttbk1|mKIAA0847	tau tubulin kinase 2	protein-coding	0.125000	0.751244	
mm_48348.1	chr5	139325522	139325722	-	1	NA	NA	NA	-158	NM_172723	231821	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.135000	0.756219	
mm_141864.1	chr17	34804426	34804626	-	1	NA	NA	NA	-100	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.000000	0.492537	84(GGCTATAAAAGG,-,0.00)
mm_27728.1	chr3	69006326	69006526	-	1	NA	NA	NA	1454	NM_133786	70099	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	0.045000	0.492537	
mm_119454.1	chr14	47001266	47001466	+	1	NA	NA	NA	26	NM_001163433	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.015000	0.507463	
mm_171969.1	chr5	88162516	88162716	-	1	NA	NA	NA	76060	NM_001252680	20600	Mm.1397	NM_021289	ENSMUSG00000029281	Smr2	MSG2|Vcs2	submaxillary gland androgen regulated protein 2	protein-coding	0.035000	0.502488	
mm_164454.1	chr16	55262057	55262257	+	1	NA	NA	NA	21080	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0.005000	0.427861	-91(GCTTTTATATCA,+,0.00)
mm_150662.1	chr19	41981584	41981784	+	1	NA	NA	NA	-79	NM_145500	226122	Mm.22948	NM_145500	ENSMUSG00000025171	Ubtd1	BC016129	ubiquitin domain containing 1	protein-coding	0.080000	0.741294	
mm_41890.1	chr5	105495526	105495726	+	1	NA	NA	NA	-23845	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.020000	0.492537	
mm_76563.1	chr8	88635882	88636082	-	1	NA	NA	NA	146	NM_027840	71607	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	0.020000	0.562189	
mm_50321.1	chr6	48065845	48066045	+	1	NA	NA	NA	-17831	NM_001081382	72306	Mm.381553	NM_001081382	ENSMUSG00000071477	Zfp777	2500002G23Rik	zinc finger protein 777	protein-coding	0.020000	0.472637	
mm_68975.1	chr7	126587435	126587635	-	1	NA	NA	NA	-1718	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.005000	0.542289	
mm_6546.1	chr1	75128549	75128749	-	1	NA	NA	NA	5241	NM_194333	22626	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.005000	0.482587	
mm_49278.1	chr6	17637575	17637775	+	1	NA	NA	NA	577	NM_007604	12343	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.030000	0.512438	
mm_99447.1	chr11	102433841	102434041	+	1	NA	NA	NA	3619	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.010000	0.517413	
mm_57575.1	chr6	127148662	127148862	-	1	NA	NA	NA	-627	NR_040274	77558	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.025000	0.537313	
mm_117205.1	chr13	64076508	64076708	-	1	NA	NA	NA	12593	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.005000	0.472637	
mm_136954.1	chr17	14945212	14945412	+	1	NA	NA	NA	2128	NM_026451	67912	Mm.390949	NM_026451	ENSMUSG00000050088	1600012H06Rik	-	RIKEN cDNA 1600012H06 gene	protein-coding	0.010000	0.412935	
mm_158611.1	chrX	152643773	152643973	-	1	NA	NA	NA	276	NM_001290687	110380	Mm.40796	NM_172441	ENSMUSG00000045180	Shroom2	4832440C16|Apxl|C630003H05Rik|Shrm2	shroom family member 2	protein-coding	0.015000	0.497512	
mm_90329.1	chr10	127078865	127079065	+	1	NA	NA	NA	58	NM_001033263	216439	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.075000	0.701493	
mm_4898.1	chr1	189781908	189782108	+	1	NA	NA	NA	53740	NM_008976	19250	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|OTTMUSG00000022087|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	0.015000	0.527363	
mm_66944.1	chr7	61982198	61982398	-	1	NA	NA	NA	5	NR_015599	320026	Mm.131850	NR_015599	ENSMUSG00000109321	A330076H08Rik	Mirh1	RIKEN cDNA A330076H08 gene	ncRNA	0.005000	0.532338	
mm_81927.1	chr9	120175380	120175580	+	1	NA	NA	NA	25738	NM_001039364	17433	Mm.486167	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.005000	0.497512	
mm_137184.1	chr17	23816310	23816510	+	1	NA	NA	NA	12699	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.030000	0.447761	
mm_66108.1	chr7	31041615	31041815	-	1	NA	NA	NA	124	NM_001111073	18301	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	0.030000	0.631841	
mm_120642.1	chr14	70521728	70521928	+	1	NA	NA	NA	-1568	NR_033241	12153	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.015000	0.512438	69(GCTTATAGGCCG,+,0.00)
mm_160622.1	chr9	97018179	97018379	-	1	NA	NA	NA	76	NM_145134	211949	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0.095000	0.686567	77(TCTTTTATGGTA,+,0.00)
mm_104115.1	chr11	86730237	86730437	-	1	NA	NA	NA	27155	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.020000	0.417910	
mm_129326.1	chr15	77771119	77771319	-	1	NA	NA	NA	-15990	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.030000	0.577114	
mm_23236.1	chr3	50900947	50901147	+	1	NA	NA	NA	-323400	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.030000	0.477612	
mm_111589.1	chr12	101975615	101975815	-	1	NA	NA	NA	-259	NM_016856	51786	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.095000	0.701493	
mm_36796.1	chr4	103114724	103114924	-	1	NA	NA	NA	434	NM_001286222	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.140000	0.741294	
mm_1527.1	chr1	72848983	72849183	+	1	NA	NA	NA	23696	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.020000	0.542289	
mm_64981.1	chr7	16915497	16915697	-	1	NA	NA	NA	8435	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.015000	0.542289	
mm_2269.1	chr1	91214431	91214631	+	1	NA	NA	NA	34709	NM_001168392	51801	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	0.000000	0.432836	
mm_170183.1	chr17	6122035	6122235	-	1	NA	NA	NA	15305	NM_001103181	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.070000	0.641791	
mm_92254.1	chr10	70599219	70599419	-	1	NA	NA	NA	-28	NM_178621	70911	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding	0.165000	0.776119	
mm_101049.1	chr11	8635810	8636010	-	1	NA	NA	NA	28625	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.010000	0.542289	
mm_90808.1	chr10	7681041	7681241	-	1	NA	NA	NA	17	NR_033219	407824	Mm.393120	NR_033219		BC020402	-	cDNA sequence BC020402	ncRNA	0.150000	0.751244	
mm_161537.1	chr15	102936737	102936937	+	1	NA	NA	NA	-16	NM_010463	15421	Mm.221179	NM_010463	ENSMUSG00000050328	Hoxc12	Hox-3.8	homeobox C12	protein-coding	0.050000	0.557214	
mm_165389.1	chr2	131807123	131807323	+	1	NA	NA	NA	40433	NR_029381	414081	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	0.025000	0.502488	
mm_43764.1	chr5	140704984	140705184	+	1	NA	NA	NA	18	NM_001276287	231841	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	0.085000	0.631841	
mm_17984.1	chr2	37802090	37802290	-	1	NA	NA	NA	25941	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.035000	0.572139	
mm_35846.1	chr4	48435004	48435204	-	1	NA	NA	NA	38318	NM_172304	269536	Mm.272025	NM_172304	ENSMUSG00000028345	Tex10	2610206N19Rik|2810462N03Rik|BC006867	testis expressed gene 10	protein-coding	0.005000	0.407960	
mm_108476.1	chr12	83659334	83659534	+	1	NA	NA	NA	27200	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.015000	0.343284	
mm_113240.1	chr13	27312554	27312754	+	1	NA	NA	NA	27	NM_011166	19111	Mm.7512	NM_011166	ENSMUSG00000069259	Prl6a1	Ghd10|PLP-B|Prlpb	prolactin family 6, subfamily a, member 1	protein-coding	0.020000	0.432836	-69(GTATATAAAAGG,-,0.00)
mm_151730.1	chr19	4876775	4876975	-	1	NA	NA	NA	1034	NM_013456	11474	Mm.5316	NM_013456	ENSMUSG00000006457	Actn3	-	actinin alpha 3	protein-coding	0.010000	0.582090	
mm_114843.1	chr13	92660937	92661137	+	1	NA	NA	NA	49899	NM_172588	218442	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.030000	0.517413	
mm_163838.1	chr14	19417751	19417951	+	1	NA	NA	NA	184736	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.353234	
mm_65379.1	chr7	25090575	25090775	-	1	NA	NA	NA	6500	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.020000	0.378109	-65(AGCTTTAAAAGA,-,0.00),-64(GCTTTAAAAGAA,+,0.00)
mm_26275.1	chr3	142505374	142505574	+	1	NA	NA	NA	8540	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.025000	0.547264	
mm_36478.1	chr4	82859525	82859725	-	1	NA	NA	NA	36	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0.170000	0.791045	
mm_100591.1	chr11	120957914	120958114	+	1	NA	NA	NA	8947	NM_001038654	80879	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0.020000	0.601990	
mm_25625.1	chr3	118777435	118777635	+	1	NA	NA	NA	215357	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.005000	0.432836	
mm_156055.1	chrX	109118245	109118445	+	1	NA	NA	NA	22938	NM_019989	56726	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	0.000000	0.437811	
mm_167272.1	chr8	33517187	33517387	+	1	NA	NA	NA	32976	NR_033589	628431	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	0.140000	0.791045	
mm_121051.1	chr14	84445244	84445444	+	1	NA	NA	NA	1781	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0.040000	0.492537	58(ATCTTTAAATGC,-,0.00)
mm_152787.1	chr19	21460783	21460983	-	1	NA	NA	NA	11778	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.015000	0.497512	
mm_131568.1	chr16	18217779	18217979	+	1	NA	NA	NA	-4016	NR_015575	66779	Mm.387525	NR_015575		4933432I09Rik	-	RIKEN cDNA 4933432I09 gene	ncRNA	0.005000	0.601990	
mm_103207.1	chr11	70652831	70653031	-	1	NA	NA	NA	1719	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.030000	0.487562	
mm_117497.1	chr13	78198938	78199138	-	1	NA	NA	NA	-165	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.105000	0.711443	
mm_139175.1	chr17	47590468	47590668	+	1	NA	NA	NA	-2899	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.015000	0.517413	
mm_158254.1	chrX	108765267	108765467	-	1	NA	NA	NA	68988	NM_001081477	382236	Mm.100112	NM_001081477	ENSMUSG00000063663	Brwd3	Brodl|D030064D06Rik|Gm596	bromodomain and WD repeat domain containing 3	protein-coding	0.000000	0.363184	
mm_2510.1	chr1	106228086	106228286	+	1	NA	NA	NA	56317	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.000000	0.442786	
mm_34319.1	chr4	141821301	141821501	+	1	NA	NA	NA	4604	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.010000	0.512438	
mm_97415.1	chr11	77982667	77982867	+	1	NA	NA	NA	-49	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0.180000	0.791045	
mm_45545.1	chr5	72868373	72868573	-	1	NA	NA	NA	-25	NM_001113460	21682	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.110000	0.701493	
mm_55846.1	chr6	83326175	83326375	-	1	NA	NA	NA	236	NM_145571	232157	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	0.130000	0.796020	
mm_608.1	chr1	39907053	39907253	+	1	NA	NA	NA	6240	NM_008696	26921	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.020000	0.542289	
mm_15390.1	chr2	156720977	156721177	+	1	NA	NA	NA	112	NM_001042488	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.175000	0.781095	
mm_30784.1	chr4	19575034	19575234	+	1	NA	NA	NA	68	NM_025476	66302	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	0.100000	0.646766	
mm_55696.1	chr6	72885327	72885527	-	1	NA	NA	NA	13865	NM_001347231	74287	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0.005000	0.343284	
mm_43179.1	chr5	127793185	127793385	+	1	NA	NA	NA	161023	NM_177005	319804	Mm.237888	NM_177005	ENSMUSG00000049971	Glt1d1	5730455A04Rik	glycosyltransferase 1 domain containing 1	protein-coding	0.000000	0.407960	-38(GGCTCTTTGAGG,-,0.00)
mm_118272.1	chr13	112620580	112620780	-	1	NA	NA	NA	31630	NM_010029	13206	Mm.12818	NM_010029	ENSMUSG00000021758	Ddx4	AV206478|Mvh|VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding	0.020000	0.412935	
mm_96176.1	chr11	61647614	61647814	+	1	NA	NA	NA	-5607	NM_027817	71520	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.030000	0.552239	
mm_71064.1	chr8	34054541	34054741	+	1	NA	NA	NA	53173	NM_001293758	22428	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.025000	0.507463	
mm_170619.1	chr19	61313412	61313612	-	1	NA	NA	NA	-85094	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.035000	0.542289	
mm_97398.1	chr11	77837994	77838194	+	1	NA	NA	NA	36796	NM_001291215	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.015000	0.597015	
mm_138534.1	chr17	35246918	35247118	+	1	NA	NA	NA	2943	NR_105941	102465589		NR_105941	ENSMUSG00000098499	Mir6975	Gm27693|mmu-mir-6975	microRNA 6975	ncRNA	0.040000	0.487562	
mm_70460.1	chr8	11840422	11840622	+	1	NA	NA	NA	1	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	0.010000	0.482587	-80(CCTTTTATGACC,+,0.00),61(CTTCTTAGAGGC,+,0.00)
mm_90686.1	chr10	128933657	128933857	+	1	NA	NA	NA	-56	NM_008398	16404	Mm.179747	NM_008398	ENSMUSG00000025348	Itga7	[a]7|alpha7	integrin alpha 7	protein-coding	0.065000	0.696517	
mm_32910.1	chr4	119132137	119132337	+	1	NA	NA	NA	23492	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.035000	0.557214	
mm_162682.1	chr10	13868666	13868866	-	1	NA	NA	NA	191	NM_025446	66253	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	0.120000	0.716418	
mm_73453.1	chr8	106415258	106415458	+	1	NA	NA	NA	19	NM_011764	22751	Mm.295582	NM_011764	ENSMUSG00000031907	Zfp90	6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954	zinc finger protein 90	protein-coding	0.100000	0.636816	
mm_111697.1	chr12	103657004	103657204	-	1	NA	NA	NA	114	NM_007618	12401	Mm.290079	NM_007618	ENSMUSG00000060807	Serpina6	Cbg	serine (or cysteine) peptidase inhibitor, clade A, member 6	protein-coding	0.015000	0.552239	
mm_35912.1	chr4	50827022	50827222	-	1	NA	NA	NA	-389556	NM_001162865	74914	Mm.159368	NM_001162865	ENSMUSG00000039555	Cylc2	4930488P18Rik	cylicin, basic protein of sperm head cytoskeleton 2	protein-coding	0.005000	0.477612	
mm_66224.1	chr7	34952890	34953090	-	1	NA	NA	NA	40583	NM_008820	18624	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0.005000	0.467662	
mm_13125.1	chr2	91710768	91710968	+	1	NA	NA	NA	-82	NM_178724	241547	Mm.130331	NM_178724	ENSMUSG00000027243	Harbi1	D230010M03Rik	harbinger transposase derived 1	protein-coding	0.130000	0.691542	
mm_172195.1	chr6	51466208	51466408	-	1	NA	NA	NA	3586	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.000000	0.353234	-83(CACCATAAATGG,-,0.00),-81(CCATAAATGGTC,+,0.00)
mm_63711.1	chr7	130692506	130692706	+	1	NA	NA	NA	50	NM_021314	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.070000	0.611940	-20(GGCTTTAAGAGA,-,0.00),-19(GCTTTAAGAGAA,+,0.00)
mm_129614.1	chr15	80013119	80013319	-	1	NA	NA	NA	1589	NM_011057	18591	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.080000	0.676617	
mm_24044.1	chr3	87846936	87847136	+	1	NA	NA	NA	281	NM_021309	27371	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	0.025000	0.547264	-82(CCTTTTCGAGAC,+,0.00)
mm_26211.1	chr3	138744169	138744369	+	1	NA	NA	NA	2061	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.005000	0.447761	
mm_133403.1	chr16	84834950	84835150	+	1	NA	NA	NA	-28	NM_001302214	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.045000	0.557214	
mm_73368.1	chr8	105613135	105613335	+	1	NA	NA	NA	-2231	NR_035492	100316712		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0.070000	0.686567	
mm_84866.1	chr9	78630273	78630473	-	1	NA	NA	NA	14827	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.015000	0.427861	
mm_148658.1	chr19	5553267	5553467	+	1	NA	NA	NA	7208	NM_019935	18426	Mm.280225	NM_019935	ENSMUSG00000024922	Ovol1	BB147136|Ovo1|movo1	ovo like zinc finger 1	protein-coding	0.020000	0.467662	-34(GCCCATATAGGA,-,0.00),12(GACCCTAAAGGC,-,0.00)
mm_49006.1	chr6	4757294	4757494	+	1	NA	NA	NA	10088	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.452736	-29(CACTTTATAAGT,-,0.00)
mm_32077.1	chr4	98111927	98112127	+	1	NA	NA	NA	271238	NM_053157	94043	Mm.331719	NM_053157	ENSMUSG00000028563	Tm2d1	2310026L18Rik|AA990549|Bbp	TM2 domain containing 1	protein-coding	0.005000	0.278607	
mm_37871.1	chr4	132353275	132353475	-	1	NA	NA	NA	311	NR_003270	399101	Mm.486919	NR_002904	ENSMUSG00000085241	Snhg3	Rnu17d|U17HG	small nucleolar RNA host gene 3	ncRNA	0.060000	0.507463	7(CCTTTAATGTTC,+,0.00),18(CACTTTAAGAGG,-,0.00)
mm_29920.1	chr3	131490374	131490574	-	1	NA	NA	NA	-74294	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.120000	0.721393	
mm_32575.1	chr4	110351384	110351584	+	1	NA	NA	NA	427	NM_001163397	15572	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein-coding	0.075000	0.636816	
mm_133312.1	chr16	77636970	77637170	+	1	NA	NA	NA	-9203	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0.005000	0.353234	
mm_63993.1	chr7	140097037	140097237	+	1	NA	NA	NA	3741	NM_009475	22264	Mm.439707	NM_009475	ENSMUSG00000025467	Prap1	Upa	proline-rich acidic protein 1	protein-coding	0.010000	0.482587	
mm_22798.1	chr3	22398823	22399023	+	1	NA	NA	NA	147553	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0.010000	0.462687	
mm_131977.1	chr16	24984136	24984336	+	1	NA	NA	NA	-75403	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.000000	0.343284	
mm_108480.1	chr12	83660218	83660418	+	1	NA	NA	NA	28084	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.010000	0.383085	
mm_78855.1	chr9	44379424	44379624	+	1	NA	NA	NA	34	NM_021395	12282	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	0.135000	0.721393	
mm_167972.1	chrX	154685179	154685379	+	1	NA	NA	NA	-105949	NM_001037167	434881	Mm.357614	NM_001037167	ENSMUSG00000072888	Samt2	EG434881|Gm5647	spermatogenesis associated multipass transmembrane protein 2	protein-coding	0.050000	0.522388	-72(GGCTATATAAGC,-,0.00)
mm_155237.1	chrX	57211987	57212187	+	1	NA	NA	NA	-56	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.025000	0.477612	
mm_85719.1	chr9	108274977	108275177	-	1	NA	NA	NA	-11119	NM_001276486	13138	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	0.000000	0.472637	
mm_4581.1	chr1	178211066	178211266	+	1	NA	NA	NA	23749	NM_024282	78825	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	0.000000	0.278607	-16(GCTTTTATACAC,+,0.00)
mm_65809.1	chr7	29007802	29008002	-	1	NA	NA	NA	25048	NM_008279	26411	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.015000	0.542289	
mm_86949.1	chr10	24869924	24870124	+	1	NA	NA	NA	38	NM_027347	70208	Mm.28020	NM_027347	ENSMUSG00000019984	Med23	130kDa|3000002A17Rik|Crsp3|ESTM7|Sur2|X83317|mKIAA1216	mediator complex subunit 23	protein-coding	0.090000	0.661692	
mm_159877.1	chr6	4905113	4905313	+	1	NA	NA	NA	1893	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.010000	0.338308	
mm_65092.1	chr7	19266463	19266663	-	1	NA	NA	NA	5291	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.020000	0.611940	
mm_78395.1	chr9	28920316	28920516	+	1	NA	NA	NA	1042713	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.005000	0.343284	
mm_138403.1	chr17	35059081	35059281	+	1	NA	NA	NA	146	NM_016765	51793	Mm.1457	NM_016765	ENSMUSG00000007039	Ddah2	1110003M04Rik|AU019324|AW413173|DDAH-2|DDAHII|Ddah|G6a|NG30	dimethylarginine dimethylaminohydrolase 2	protein-coding	0.060000	0.626866	
mm_55835.1	chr6	83125093	83125293	-	1	NA	NA	NA	-164	NM_023547	70020	Mm.27814	NM_023547	ENSMUSG00000030034	Ino80b	2510009I23Rik|HMG1YL4|Hmga1l4|Papa1|Znhit4	INO80 complex subunit B	protein-coding	0.070000	0.537313	
mm_92921.1	chr10	84440498	84440698	-	1	NA	NA	NA	-127	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.135000	0.736318	
mm_42496.1	chr5	115476769	115476969	+	1	NA	NA	NA	7428	NM_001167691	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.010000	0.338308	
mm_37883.1	chr4	132463801	132464001	-	1	NA	NA	NA	20	NM_026039	67219	Mm.45929	NM_026039	ENSMUSG00000066042	Med18	2810046C01Rik	mediator complex subunit 18	protein-coding	0.075000	0.592040	
mm_15972.1	chr2	166080654	166080854	+	1	NA	NA	NA	74531	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.040000	0.592040	
mm_77475.1	chr8	122443283	122443483	-	1	NA	NA	NA	39	NM_138656	192156	Mm.28146	NM_138656	ENSMUSG00000006517	Mvd	C78718|Mpd	mevalonate (diphospho) decarboxylase	protein-coding	0.060000	0.572139	
mm_145476.1	chr18	60376035	60376235	+	1	NA	NA	NA	106	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.457711	
mm_49377.1	chr6	24552758	24552958	+	1	NA	NA	NA	24714	NM_080847	78910	Mm.160150	NM_080847	ENSMUSG00000029685	Asb15	4930400E23Rik|Asb-15	ankyrin repeat and SOCS box-containing 15	protein-coding	0.015000	0.303483	
mm_160797.1	chr11	4704234	4704434	-	1	NA	NA	NA	10	NM_197979	66152	Mm.269736	NM_197979	ENSMUSG00000059534	Uqcr10	1110020P15Rik|AA960494|Ucrc	ubiquinol-cytochrome c reductase, complex III subunit X	protein-coding	0.075000	0.532338	
mm_136802.1	chr17	12318784	12318984	+	1	NA	NA	NA	31	NR_045290	224523	Mm.188855	NR_045290	ENSMUSG00000097350	4732491K20Rik	-	RIKEN cDNA 4732491K20 gene	ncRNA	0.100000	0.706468	
mm_83923.1	chr9	56620592	56620792	-	1	NA	NA	NA	14956	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.060000	0.572139	
mm_130270.1	chr15	96698657	96698857	-	1	NA	NA	NA	941	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.105000	0.646766	
mm_6620.1	chr1	75549713	75549913	-	1	NA	NA	NA	3547	NM_009208	20536	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	0.020000	0.597015	
mm_103701.1	chr11	79516378	79516578	-	1	NA	NA	NA	7284	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.005000	0.442786	
mm_60568.1	chr7	44481380	44481580	+	1	NA	NA	NA	-3037	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.502488	
mm_84713.1	chr9	73113236	73113436	-	1	NA	NA	NA	-133	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0.060000	0.587065	
mm_106040.1	chr11	116079171	116079371	-	1	NA	NA	NA	-1310	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.030000	0.597015	
mm_135874.1	chr16	62846876	62847076	-	1	NA	NA	NA	64	NM_026577	68146	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	0.110000	0.671642	
mm_103359.1	chr11	74896973	74897173	-	1	NA	NA	NA	7	NM_197943	97761	Mm.245894	NM_197943	ENSMUSG00000038351	Sgsm2	D630003G22Rik|R74628|Rutbc1|mKIAA0397	small G protein signaling modulator 2	protein-coding	0.105000	0.766169	
mm_2435.1	chr1	97024307	97024507	+	1	NA	NA	NA	-26847	NR_120500	67854	Mm.263706	NM_026413	ENSMUSG00000045463	Slco6b1	1700022M03Rik	solute carrier organic anion transporter family, member 6b1	ncRNA	0.050000	0.467662	79(GCGTTTTTAAGG,-,0.00),81(GTTTTTAAGGCG,+,0.00)
mm_134127.1	chr16	10395349	10395549	-	1	NA	NA	NA	-1	NM_001099275	70426	Mm.142181	NM_001099275	ENSMUSG00000039179	Tekt5	3300001K11Rik	tektin 5	protein-coding	0.025000	0.567164	
mm_42729.1	chr5	120621277	120621477	+	1	NA	NA	NA	8247	NM_028041	71990	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0.045000	0.542289	
mm_143174.1	chr17	57242610	57242810	-	1	NA	NA	NA	4760	NM_001308074	78308	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0.020000	0.537313	
mm_94360.1	chr11	5009374	5009574	+	1	NA	NA	NA	22650	NM_007454	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.005000	0.427861	
mm_39867.1	chr5	31054743	31054943	+	1	NA	NA	NA	63	NM_001289522	69719	Mm.305535	NM_023525	ENSMUSG00000013629	Cad	2410008J01Rik|AU018859|Cpad	carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase	protein-coding	0.130000	0.711443	
mm_26443.1	chr3	142635188	142635388	+	1	NA	NA	NA	-11342	NR_105802	102465200		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.010000	0.442786	
mm_36007.1	chr4	56802152	56802352	-	1	NA	NA	NA	-77	NM_001081420	230234	Mm.268148	NM_001081420	ENSMUSG00000038827	Fam206a	simiate	family with sequence similarity 206, member A	protein-coding	0.125000	0.666667	
mm_95867.1	chr11	58012433	58012633	+	1	NA	NA	NA	3469	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.000000	0.353234	
mm_113522.1	chr13	37825760	37825960	+	1	NA	NA	NA	-178	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.070000	0.701493	
mm_114207.1	chr13	56144222	56144422	+	1	NA	NA	NA	-8772	NM_001159513	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.010000	0.492537	
mm_60850.1	chr7	45830770	45830970	+	1	NA	NA	NA	-81	NM_153419	101612	Mm.274847	NM_153419	ENSMUSG00000053801	Grwd1	A301|AI504353|Grwd|Wdr28	glutamate-rich WD repeat containing 1	protein-coding	0.070000	0.557214	
mm_112176.1	chr12	113421381	113421581	-	1	NA	NA	NA	-68084	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.442786	
mm_130391.1	chr15	97908189	97908389	-	1	NA	NA	NA	7	NM_009504	22337	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D receptor	protein-coding	0.065000	0.671642	
mm_134900.1	chr16	30039227	30039427	-	1	NA	NA	NA	152	NR_045878	71528	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	0.005000	0.572139	-74(CCTCTAATGGGC,+,0.00)
mm_83376.1	chr9	44526385	44526585	-	1	NA	NA	NA	-64	NM_007551	12145	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	0.025000	0.517413	
mm_144693.1	chr18	34860874	34861074	+	1	NA	NA	NA	-233	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.070000	0.691542	
mm_57543.1	chr6	126645063	126645263	-	1	NA	NA	NA	638	NM_010595	16485	Mm.40424	NM_010595	ENSMUSG00000047976	Kcna1	AI840627|Kca1-1|Kv1.1|MBK1|Mk-1|Shak|mceph	potassium voltage-gated channel, shaker-related subfamily, member 1	protein-coding	0.055000	0.631841	
mm_31674.1	chr4	62230894	62231094	+	1	NA	NA	NA	-22448	NM_001290350	22696	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0.035000	0.502488	
mm_45974.1	chr5	90470678	90470878	-	1	NA	NA	NA	9908	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.398010	
mm_67112.1	chr7	70360639	70360839	-	1	NA	NA	NA	-146	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.025000	0.507463	
mm_79613.1	chr9	58629018	58629218	+	1	NA	NA	NA	46878	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.010000	0.407960	
mm_46983.1	chr5	115300836	115301036	-	1	NA	NA	NA	54	NM_019682	56455	Mm.256858	NM_019682	ENSMUSG00000009013	Dynll1	Dlc8|Dnclc1|Pin	dynein light chain LC8-type 1	protein-coding	0.125000	0.736318	
mm_79410.1	chr9	55149526	55149726	+	1	NA	NA	NA	257	NM_001346657	109161	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0.125000	0.701493	
mm_77484.1	chr8	122491838	122492038	-	1	NA	NA	NA	15795	NM_153775	66965	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0.025000	0.507463	-45(GCTTTTATGTAG,+,0.00)
mm_117600.1	chr13	89909560	89909760	-	1	NA	NA	NA	-167148	NM_001134475	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.000000	0.368159	
mm_20868.1	chr2	148443337	148443537	-	1	NA	NA	NA	98	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.015000	0.621891	
mm_81627.1	chr9	110849369	110849569	+	1	NA	NA	NA	4963	NM_183103	74306	Mm.87419	NM_183103	ENSMUSG00000049719	Prss46	1700112C13Rik|79H19B|Tessp6	protease, serine 46	protein-coding	0.015000	0.507463	
mm_100932.1	chr11	6519679	6519879	-	1	NA	NA	NA	1179	NM_178440	246177	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0.015000	0.567164	
mm_142811.1	chr17	51175416	51175616	-	1	NA	NA	NA	3836	NM_028162	72238	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.005000	0.338308	
mm_30500.1	chr3	157909502	157909702	-	1	NA	NA	NA	15461	NM_145953	107869	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	0.000000	0.253731	
mm_26285.1	chr3	142505721	142505921	+	1	NA	NA	NA	8887	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.000000	0.412935	-14(GTTTATTTAAGG,-,0.00)
mm_131023.1	chr16	3121351	3121551	+	1	NA	NA	NA	-470947	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.000000	0.358209	-55(AACCTTAAAAAG,-,0.00),-53(CCTTAAAAAGAT,+,0.00)
mm_157897.1	chrX	77795898	77796098	-	1	NA	NA	NA	-38	NM_016979	19108	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding	0.105000	0.686567	
mm_93847.1	chr10	121800476	121800676	-	1	NA	NA	NA	60639	NM_173022	270802	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	0.005000	0.442786	
mm_18222.1	chr2	50522933	50523133	-	1	NA	NA	NA	226223	NR_040362	100502624	Mm.382825	NR_040361	ENSMUSG00000085862	Gm13483	OTTMUSG00000012382	predicted gene 13483	ncRNA	0.035000	0.383085	-22(CTCCATTAAAAC,-,0.00)
mm_145779.1	chr18	65072207	65072407	+	1	NA	NA	NA	48780	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.030000	0.477612	
mm_83052.1	chr9	37544967	37545167	-	1	NA	NA	NA	5812	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.075000	0.601990	
mm_166982.1	chr7	45639804	45640004	+	1	NA	NA	NA	-73	NM_172418	74490	Mm.107442	NM_172418	ENSMUSG00000042918	Mamstr	2810022D01Rik|5430432N15Rik|AW743872|Mastr	MEF2 activating motif and SAP domain containing transcriptional regulator	protein-coding	0.055000	0.636816	5(CCCTAGAAAGGG,-,0.00)
mm_34010.1	chr4	137992958	137993158	+	1	NA	NA	NA	-398	NM_001256198	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.110000	0.611940	
mm_95439.1	chr11	50225272	50225472	+	1	NA	NA	NA	37	NM_145926	103534	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0.150000	0.771144	-68(CCCTTTAAATCC,+,0.00)
mm_144915.1	chr18	37484892	37485092	+	1	NA	NA	NA	-29	NM_053142	93888	Mm.87553	NM_053142	ENSMUSG00000046387	Pcdhb17	Pcdhb16|PcdhbQ|mKIAA1621	protocadherin beta 17	protein-coding	0.035000	0.472637	
mm_102592.1	chr11	61926932	61927132	-	1	NA	NA	NA	3225	NM_019921	56697	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0.015000	0.388060	
mm_28560.1	chr3	93443818	93444018	-	1	NA	NA	NA	1588	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.060000	0.572139	
mm_5524.1	chr1	37865034	37865234	-	1	NA	NA	NA	-52	NM_207228	211484	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	0.160000	0.711443	
mm_171767.1	chr5	107903189	107903389	+	1	NA	NA	NA	2761	NM_016980	100503670	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	0.010000	0.442786	
mm_64368.1	chr7	142441717	142441917	+	1	NA	NA	NA	-651	NM_009405	21953	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	0.015000	0.616915	
mm_157046.1	chrX	8005869	8006069	-	1	NA	NA	NA	12523	NM_027227	69824	Mm.279756	NM_027227	ENSMUSG00000031163	Glod5	2010001H14Rik|AV061890	glyoxalase domain containing 5	protein-coding	0.035000	0.507463	-25(GTTTTTAAACCG,+,0.00)
mm_171754.1	chr5	104859968	104860168	-	1	NA	NA	NA	0	NM_001039231	626391	Mm.385405	NM_001039231	ENSMUSG00000072774	Zfp951	C230055K05Rik	zinc finger protein 951	protein-coding	0.030000	0.467662	
mm_157723.1	chrX	70344866	70345066	-	1	NA	NA	NA	20119	NM_010498	15931	Mm.233083	NM_010498	ENSMUSG00000035847	Ids	AW214631	iduronate 2-sulfatase	protein-coding	0.000000	0.348259	
mm_62824.1	chr7	113513721	113513921	+	1	NA	NA	NA	-13	NM_001285831	67420	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.120000	0.676617	
mm_74161.1	chr8	123397826	123398026	+	1	NA	NA	NA	-9156	NM_008559	17199	Mm.324942	NM_008559	ENSMUSG00000074037	Mc1r	Mcr1|Mshra|Tob|e	melanocortin 1 receptor	protein-coding	0.020000	0.577114	
mm_117724.1	chr13	95525125	95525325	-	1	NA	NA	NA	15	NM_007974	14063	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	0.080000	0.651741	
mm_48728.1	chr5	147426452	147426652	-	1	NA	NA	NA	-4028	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.000000	0.502488	
mm_105526.1	chr11	106300447	106300647	-	1	NA	NA	NA	1349	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.050000	0.592040	
mm_22730.1	chr3	19686982	19687182	+	1	NA	NA	NA	8314	NM_205769	12918	Mm.290689	NM_205769	ENSMUSG00000049796	Crh	CRF|Gm1347	corticotropin releasing hormone	protein-coding	0.000000	0.313433	
mm_28046.1	chr3	84040024	84040224	-	1	NA	NA	NA	37	NM_172681	229473	Mm.28838	NM_172681	ENSMUSG00000033767	D930015E06Rik	Kiaa0922|mKIAA0922	RIKEN cDNA D930015E06 gene	protein-coding	0.160000	0.796020	
mm_92992.1	chr10	86702884	86703084	-	1	NA	NA	NA	2460	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.015000	0.378109	
mm_68154.1	chr7	102250403	102250603	-	1	NA	NA	NA	-385	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.050000	0.641791	
mm_46902.1	chr5	114131492	114131692	-	1	NA	NA	NA	436	NM_011677	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.070000	0.587065	
mm_32447.1	chr4	107314312	107314512	+	1	NA	NA	NA	49	NM_001205156	230584	Mm.29118	NM_145550	ENSMUSG00000057375	Yipf1	C030002N13Rik	Yip1 domain family, member 1	protein-coding	0.040000	0.616915	
mm_19996.1	chr2	118728338	118728538	-	1	NA	NA	NA	0	NM_177568	18796	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	0.020000	0.587065	-34(GGCTATAAGAGC,-,0.00)
mm_82276.1	chr9	7354665	7354865	-	1	NA	NA	NA	7391	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.378109	-92(ACCTTTAAAAAG,-,0.00),-91(CCTTTAAAAAGG,+,0.00),-90(CTTTAAAAAGGA,+,0.00)
mm_126010.1	chr15	76576322	76576522	+	1	NA	NA	NA	63	NR_073123	268822	Mm.181624	NM_172960	ENSMUSG00000022550	Adck5	A230108P17	aarF domain containing kinase 5	protein-coding	0.110000	0.696517	
mm_170271.1	chr18	24051544	24051744	-	1	NA	NA	NA	-30873	NM_021559	59057	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf191|Znf24|Znp191	zinc finger protein 24	protein-coding	0.005000	0.452736	
mm_57040.1	chr6	122339737	122339937	-	1	NA	NA	NA	-180	NM_007905	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.150000	0.855721	
mm_167340.1	chr8	73353460	73353660	-	1	NA	NA	NA	-20	NM_010687	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.090000	0.681592	
mm_7273.1	chr1	96997503	96997703	-	1	NA	NA	NA	-43	NR_120500	67854	Mm.263706	NM_026413	ENSMUSG00000045463	Slco6b1	1700022M03Rik	solute carrier organic anion transporter family, member 6b1	ncRNA	0.035000	0.512438	
mm_43375.1	chr5	135669935	135670135	+	1	NA	NA	NA	-19110	NM_008898	18984	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.010000	0.562189	
mm_76685.1	chr8	94070127	94070327	-	1	NA	NA	NA	28584	NM_026116	67378	Mm.292107	NM_026116	ENSMUSG00000031755	Bbs2	2410125H22Rik|AI447581	Bardet-Biedl syndrome 2 (human)	protein-coding	0.010000	0.606965	
mm_1893.1	chr1	85699543	85699743	+	1	NA	NA	NA	36963	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.035000	0.522388	
mm_159942.1	chr6	83277141	83277341	+	1	NA	NA	NA	39866	NM_001166067	232156	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	0.025000	0.477612	
mm_130495.1	chr15	98807848	98808048	-	1	NA	NA	NA	-23	NM_001013741	13199	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.110000	0.696517	15(GGGTATATATAG,-,0.00)
mm_67234.1	chr7	75307629	75307829	-	1	NA	NA	NA	657	NM_001109753	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.015000	0.517413	
mm_136895.1	chr17	13013447	13013647	+	1	NA	NA	NA	5708	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.015000	0.502488	74(GCTTTAAAACTC,+,0.00)
mm_86315.1	chr9	122865869	122866069	-	1	NA	NA	NA	37	NM_173364	235682	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	0.080000	0.646766	
mm_98065.1	chr11	85832837	85833037	+	1	NA	NA	NA	322	NM_009324	21385	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0.165000	0.825871	
mm_160363.1	chr8	21958765	21958965	+	1	NA	NA	NA	151	NM_001081662	97476	Mm.297693	NM_001081662	ENSMUSG00000079112	Fam90a1a	C86695	family with sequence similarity 90, member A1A	protein-coding	0.010000	0.467662	
mm_169005.1	chr13	104183472	104183672	+	1	NA	NA	NA	4474	NM_030731	81003	Mm.244190	NM_030731	ENSMUSG00000021712	Trim23	6330516O20Rik|AI450195|Arfd1	tripartite motif-containing 23	protein-coding	0.005000	0.462687	
mm_63489.1	chr7	127767380	127767580	+	1	NA	NA	NA	-2335	NM_198424	269999	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0.040000	0.601990	
mm_67960.1	chr7	100533370	100533570	-	1	NA	NA	NA	-3630	NM_183270	68185	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	0.020000	0.477612	
mm_116017.1	chr13	24800684	24800884	-	1	NA	NA	NA	-873	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.060000	0.646766	
mm_140488.1	chr17	3283072	3283272	-	1	NA	NA	NA	-43401	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.015000	0.527363	
mm_149710.1	chr19	21653105	21653305	+	1	NA	NA	NA	-104	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.135000	0.771144	
mm_47269.1	chr5	121859049	121859249	-	1	NA	NA	NA	10121	NM_175474	231717	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.020000	0.432836	
mm_49123.1	chr6	8521790	8521990	+	1	NA	NA	NA	1832	NM_001286729	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.015000	0.522388	
mm_82942.1	chr9	35305339	35305539	-	1	NA	NA	NA	24334	NR_040715	71133	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.025000	0.368159	
mm_110492.1	chr12	52602267	52602467	-	1	NA	NA	NA	-45	NR_045910	73278	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0.020000	0.532338	
mm_104203.1	chr11	87998178	87998378	-	1	NA	NA	NA	20	NM_001168471	68097	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	0.010000	0.492537	
mm_46059.1	chr5	92256237	92256437	-	1	NA	NA	NA	-3178	NM_011148	19023	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	0.025000	0.597015	
mm_132335.1	chr16	33819586	33819786	+	1	NA	NA	NA	-9979	NM_010580	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.005000	0.507463	
mm_76033.1	chr8	77310842	77311042	-	1	NA	NA	NA	-206114	NR_028125	70345	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.015000	0.447761	
mm_73071.1	chr8	94434634	94434834	+	1	NA	NA	NA	369	NR_015514	320377	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0.010000	0.402985	
mm_91796.1	chr10	53398616	53398816	-	1	NA	NA	NA	-18865	NM_001204983	100038725	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	ENSMUSG00000038594|Gm9766	centrosomal protein 85-like	protein-coding	0.035000	0.552239	
mm_81485.1	chr9	109968935	109969135	+	1	NA	NA	NA	37261	NM_008633	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.005000	0.407960	
mm_10663.1	chr2	20737236	20737436	+	1	NA	NA	NA	217823	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.020000	0.452736	
mm_154646.1	chrX	7794205	7794405	+	1	NA	NA	NA	4312	NM_207670	54645	Mm.194811	NM_207670	ENSMUSG00000031153	Gripap1	AI854681|DXImx47e|GRASP-1|Sfc10|mKIAA1167	GRIP1 associated protein 1	protein-coding	0.000000	0.482587	-53(CCTTTTAGGCAC,+,0.00)
mm_16233.1	chr2	173156157	173156357	+	1	NA	NA	NA	3184	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.030000	0.537313	
mm_34143.1	chr4	139338035	139338235	+	1	NA	NA	NA	14441	NM_001290810	69902	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	0.045000	0.512438	
mm_68907.1	chr7	126456895	126457095	-	1	NA	NA	NA	6078	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.025000	0.597015	
mm_144688.1	chr18	34840481	34840681	+	1	NA	NA	NA	-8	NM_001204914	225362	Mm.293588	NM_144865	ENSMUSG00000038555	Reep2	-	receptor accessory protein 2	protein-coding	0.095000	0.686567	-6(CCCTTTAAGAGG,-,0.00),-5(CCTTTAAGAGGC,+,0.00)
mm_88384.1	chr10	76449002	76449202	+	1	NA	NA	NA	21	NM_029816	76964	Mm.472489	NM_029816	ENSMUSG00000009114	2610028H24Rik	ORF67	RIKEN cDNA 2610028H24 gene	protein-coding	0.005000	0.557214	
mm_5533.1	chr1	38022096	38022296	-	1	NA	NA	NA	24186	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.015000	0.333333	
mm_146279.1	chr18	77882458	77882658	+	1	NA	NA	NA	-55909	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.005000	0.527363	
mm_24272.1	chr3	89202902	89203102	+	1	NA	NA	NA	77	NR_122037	14466	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	0.025000	0.497512	-82(GCCCCTTTAAGC,-,0.00),-80(CCCTTTAAGCCG,+,0.00)
mm_156223.1	chrX	135707074	135707274	+	1	NA	NA	NA	-13384	NM_027952	71841	Mm.371643	NM_027952	ENSMUSG00000058252	Tcp11x2	1700008I05Rik|C77164|TCP11|Tcp11l3	t-complex 11 family, X-linked 2	protein-coding	0.000000	0.278607	
mm_79844.1	chr9	64811394	64811594	+	1	NA	NA	NA	483	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.120000	0.721393	
mm_169382.1	chr14	4097793	4097993	-	1	NA	NA	NA	73952	NM_001029930	545007	Mm.449725	NM_001029930	ENSMUSG00000096775	Gm5796	-	predicted gene 5796	protein-coding	0.065000	0.631841	
mm_73639.1	chr8	110740829	110741029	+	1	NA	NA	NA	15203	NM_001310591	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.010000	0.611940	
mm_49739.1	chr6	34745701	34745901	+	1	NA	NA	NA	-34631	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.050000	0.502488	
mm_60935.1	chr7	46861334	46861534	+	1	NA	NA	NA	171	NM_013580	16833	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	0.005000	0.587065	
mm_139293.1	chr17	48316038	48316238	+	1	NA	NA	NA	-24	NM_177083	320148	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.010000	0.527363	
mm_162245.1	chrX	159210428	159210628	+	1	NA	NA	NA	-45254	NM_148945	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	0.020000	0.447761	
mm_94510.1	chr11	7976981	7977181	+	1	NA	NA	NA	687454	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.005000	0.457711	
mm_134888.1	chr16	29490334	29490534	-	1	NA	NA	NA	51049	NM_172613	224079	Mm.54954	NM_172613	ENSMUSG00000038094	Atp13a4	4631413J11Rik|4832416L12|9330174J19Rik	ATPase type 13A4	protein-coding	0.005000	0.427861	
mm_63891.1	chr7	138846253	138846453	+	1	NA	NA	NA	-6	NM_001347618	52432	Mm.258739	NM_026391	ENSMUSG00000041769	Ppp2r2d	1300017E19Rik|D7Ertd753e|MDS026	protein phosphatase 2, regulatory subunit B, delta	protein-coding	0.155000	0.741294	
mm_153631.1	chr19	44021647	44021847	-	1	NA	NA	NA	7500	NM_001001446	226143	Mm.329866	NM_001001446	ENSMUSG00000025197	Cyp2c44	AW107714|BC034834|b2b386Clo	cytochrome P450, family 2, subfamily c, polypeptide 44	protein-coding	0.010000	0.452736	
mm_38649.1	chr4	143273932	143274132	-	1	NA	NA	NA	25532	NM_010329	14726	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding	0.025000	0.492537	
mm_65947.1	chr7	30419672	30419872	-	1	NA	NA	NA	82	NM_011827	23900	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	0.010000	0.582090	
mm_77664.1	chr8	124716600	124716800	-	1	NA	NA	NA	5275	NM_145607	234875	Mm.38436	NM_145607	ENSMUSG00000037300	Ttc13	BC017545	tetratricopeptide repeat domain 13	protein-coding	0.025000	0.577114	
mm_40320.1	chr5	43882449	43882649	+	1	NA	NA	NA	13740	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.005000	0.368159	-34(CCTTTTAAGTAG,+,0.00)
mm_53600.1	chr6	138147592	138147792	+	1	NA	NA	NA	6098	NM_001347489	56615	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.020000	0.497512	
mm_93466.1	chr10	111009913	111010113	-	1	NA	NA	NA	53	NM_172554	320150	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0.130000	0.696517	
mm_159296.1	chr2	175372370	175372570	+	1	NA	NA	NA	8	NM_001177404	100303732	Mm.484983	NM_001177404	ENSMUSG00000095199	Zfp967	Gm14431|OTTMUSG00000016608	zinc finger protein 967	protein-coding	0.015000	0.497512	
mm_46111.1	chr5	92361191	92361391	-	1	NA	NA	NA	1986	NM_019494	56066	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0.045000	0.512438	
mm_108234.1	chr12	77239070	77239270	+	1	NA	NA	NA	431	NR_045554	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.125000	0.721393	
mm_40504.1	chr5	57728694	57728894	+	1	NA	NA	NA	10713	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.010000	0.323383	
mm_71596.1	chr8	54955107	54955307	+	1	NA	NA	NA	479	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.025000	0.507463	
mm_148722.1	chr19	5846754	5846954	+	1	NA	NA	NA	-1374	NR_003513	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.030000	0.522388	
mm_10689.1	chr2	22622190	22622390	+	1	NA	NA	NA	-37	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.050000	0.601990	
mm_84429.1	chr9	65884984	65885184	-	1	NA	NA	NA	89	NM_001170907	56404	Mm.208379	NM_019797	ENSMUSG00000032386	Trip4	4930558E03Rik|ASC-1|Asc1|BB191711	thyroid hormone receptor interactor 4	protein-coding	0.110000	0.671642	
mm_10355.1	chr2	11690015	11690215	+	1	NA	NA	NA	-15178	NM_001271498	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.000000	0.393035	
mm_98734.1	chr11	96352981	96353181	+	1	NA	NA	NA	1449	NM_134032	103889	Mm.281153	NM_134032	ENSMUSG00000075588	Hoxb2	AI894218|Hox-2.8|Hoxbes2	homeobox B2	protein-coding	0.095000	0.611940	
mm_115863.1	chr13	21447142	21447342	-	1	NA	NA	NA	2082	NR_035441	100316752		NR_035441	ENSMUSG00000084590	Mir1896	Mirn1896|mmu-mir-1896	microRNA 1896	ncRNA	0.000000	0.432836	
mm_99078.1	chr11	99388878	99389078	+	1	NA	NA	NA	386	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.045000	0.601990	
mm_30617.1	chr4	8535634	8535834	+	1	NA	NA	NA	90	NM_021518	59021	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0.155000	0.766169	
mm_49183.1	chr6	15184661	15184861	+	1	NA	NA	NA	-745	NM_212435	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.000000	0.402985	
mm_96624.1	chr11	69142464	69142664	+	1	NA	NA	NA	-14508	NM_009659	11686	Mm.340329	NM_009659	ENSMUSG00000032807	Alox12b	12R-LOX|Aloxe2|e-LOX2	arachidonate 12-lipoxygenase, 12R type	protein-coding	0.005000	0.497512	
mm_144315.1	chr18	12643682	12643882	+	1	NA	NA	NA	249	NM_028341	72747	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.155000	0.815920	
mm_93423.1	chr10	108796803	108797003	-	1	NA	NA	NA	-96743	NM_203660	368203	Mm.452758	NM_203660		Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding	0.015000	0.358209	
mm_109989.1	chr12	14151977	14152177	-	1	NA	NA	NA	-39	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	0.095000	0.651741	
mm_131243.1	chr16	10526237	10526437	+	1	NA	NA	NA	16717	NM_021428	58239	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0.025000	0.532338	
mm_79967.1	chr9	66430432	66430632	+	1	NA	NA	NA	80082	NM_145617	235439	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.005000	0.323383	31(TTCCTTATAAGA,-,0.00)
mm_93225.1	chr10	95264877	95265077	-	1	NA	NA	NA	58732	NM_001330138	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.070000	0.606965	
mm_172875.1	chr9	4401015	4401215	+	1	NA	NA	NA	17578	NM_145609	78100	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	0.035000	0.537313	
mm_72503.1	chr8	83741311	83741511	+	1	NA	NA	NA	-100	NM_001163031	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.090000	0.686567	
mm_15207.1	chr2	154212950	154213150	+	1	NA	NA	NA	-10692	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.025000	0.592040	
mm_70831.1	chr8	23148502	23148702	+	1	NA	NA	NA	983	NM_001282148	101056408	Mm.475778	NM_001282148		Gm15816	OTTMUSG00000026380	predicted gene 15816	protein-coding	0.025000	0.442786	
mm_1155.1	chr1	60887217	60887417	+	1	NA	NA	NA	-21708	NM_009843	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.010000	0.412935	
mm_97689.1	chr11	80141733	80141933	+	1	NA	NA	NA	320	NM_183275	68550	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0.060000	0.532338	-29(AACTTTATAAGA,-,0.00),85(GGCCATTAAAGC,-,0.00)
mm_27319.1	chr3	50366866	50367066	-	1	NA	NA	NA	76647	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.407960	-2(CCCTTAATAACC,+,0.00)
mm_47471.1	chr5	123693380	123693580	-	1	NA	NA	NA	-9119	NM_001347468	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.010000	0.462687	-61(CCCTTTATGCAG,+,0.00)
mm_129097.1	chr15	75981731	75981931	-	1	NA	NA	NA	454	NM_001163518	223648	Mm.17610	NM_146059	ENSMUSG00000098176	Ccdc166	2410075B13Rik	coiled-coil domain containing 166	protein-coding	0.120000	0.701493	
mm_80516.1	chr9	80066816	80067016	+	1	NA	NA	NA	13	NM_146003	215351	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.130000	0.791045	
mm_62349.1	chr7	100498683	100498883	+	1	NA	NA	NA	5425	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.035000	0.597015	
mm_33557.1	chr4	131843381	131843581	+	1	NA	NA	NA	10	NM_025297	26922	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	0.100000	0.661692	-86(CTCTTTTAAAGA,-,0.00),-85(TCTTTTAAAGAA,+,0.00)
mm_50646.1	chr6	51464343	51464543	+	1	NA	NA	NA	5451	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.010000	0.417910	
mm_126463.1	chr15	80977775	80977975	+	1	NA	NA	NA	110	NM_134091	105835	Mm.274943	NM_134091	ENSMUSG00000042303	Sgsm3	1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3	small G protein signaling modulator 3	protein-coding	0.120000	0.731343	
mm_76549.1	chr8	88199238	88199438	-	1	NA	NA	NA	125	NM_001164498	214627	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0.155000	0.756219	
mm_152075.1	chr19	6840770	6840970	-	1	NA	NA	NA	-243	NM_019924	56613	Mm.20914	NM_019924	ENSMUSG00000024952	Rps6ka4	1110069D02Rik|90kDa|AI848992|Msk2|mMSK2	ribosomal protein S6 kinase, polypeptide 4	protein-coding	0.015000	0.621891	
mm_155884.1	chrX	101532656	101532856	+	1	NA	NA	NA	21	NM_001290729	270627	Mm.261750	NM_001081008	ENSMUSG00000031314	Taf1	AU015687|B430306D02Rik|Ccg-1|Ccg1|KAT4|N-TAF1|TAFII250|Taf2a|p250	TATA-box binding protein associated factor 1	protein-coding	0.055000	0.572139	
mm_73533.1	chr8	108703460	108703660	+	1	NA	NA	NA	-11084	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.010000	0.507463	
mm_137361.1	chr17	25369174	25369374	+	1	NA	NA	NA	-1279	NM_012034	26945	Mm.180108	NM_012034	ENSMUSG00000033200	Tpsg1	Prss31|Tmt	tryptase gamma 1	protein-coding	0.005000	0.542289	
mm_77792.1	chr9	3027354	3027554	+	1	NA	NA	NA	11289	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.035000	0.348259	
mm_80234.1	chr9	72679031	72679231	+	1	NA	NA	NA	16784	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.010000	0.328358	
mm_21854.1	chr2	165879522	165879722	-	1	NA	NA	NA	-1185	NM_001291158	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.020000	0.457711	
mm_25688.1	chr3	122245574	122245774	+	1	NA	NA	NA	117	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.130000	0.701493	
mm_93389.1	chr10	107123683	107123883	-	1	NA	NA	NA	-119	NM_198636	380660	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding	0.030000	0.507463	-26(CCCTATAAACTC,+,0.00)
mm_135010.1	chr16	32430998	32431198	-	1	NA	NA	NA	78	NM_001163159	13026	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	0.040000	0.611940	
mm_110928.1	chr12	76369579	76369779	-	1	NA	NA	NA	-119	NM_028356	109929	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0.145000	0.746269	
mm_142964.1	chr17	56120947	56121147	-	1	NA	NA	NA	899	NM_029796	76905	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0.015000	0.512438	
mm_163382.1	chr12	52621592	52621792	-	1	NA	NA	NA	-19370	NR_045910	73278	Mm.396209	NR_045910	ENSMUSG00000100315	1700031P21Rik	-	RIKEN cDNA 1700031P21 gene	ncRNA	0.005000	0.412935	
mm_94817.1	chr11	23152040	23152240	+	1	NA	NA	NA	0	NR_131065	76993	Mm.59224	NR_131065	ENSMUSG00000086366	1700061J23Rik	-	RIKEN cDNA 1700061J23 gene	ncRNA	0.000000	0.517413	
mm_102213.1	chr11	54908469	54908669	-	1	NA	NA	NA	5715	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.015000	0.512438	
mm_11938.1	chr2	52857733	52857933	+	1	NA	NA	NA	-35	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.160000	0.796020	
mm_16248.1	chr2	173158645	173158845	+	1	NA	NA	NA	5672	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.025000	0.507463	26(CTTTTAATAGTC,+,0.00)
mm_105317.1	chr11	102887754	102887954	-	1	NA	NA	NA	2685	NM_025766	66784	Mm.483216	NM_025766	ENSMUSG00000075510	Fam187a	4933439F11Rik	family with sequence similarity 187, member A	protein-coding	0.015000	0.497512	
mm_54308.1	chr6	29609742	29609942	-	1	NA	NA	NA	-235	NM_177296	320938	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	0.090000	0.666667	
mm_99709.1	chr11	106216874	106217074	+	1	NA	NA	NA	48	NM_028074	72047	Mm.41367	NM_028074	ENSMUSG00000020705	Ddx42	1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	protein-coding	0.140000	0.721393	
mm_48799.1	chr5	148928840	148929040	-	1	NA	NA	NA	-293	NM_153572	231912	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	0.115000	0.721393	
mm_29565.1	chr3	116861737	116861937	-	1	NA	NA	NA	157	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.050000	0.542289	
mm_34739.1	chr4	152217151	152217351	+	1	NA	NA	NA	17407	NM_001146058	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.010000	0.482587	
mm_159128.1	chr2	74668028	74668228	+	1	NA	NA	NA	-182	NM_008275	15433	Mm.57227	NM_008275	ENSMUSG00000001819	Hoxd13	Hox-4.8|spdh	homeobox D13	protein-coding	0.130000	0.731343	-32(GTTTTTATAAAC,+,0.00)
mm_123012.1	chr14	55092200	55092400	-	1	NA	NA	NA	-252	NM_001039198	239102	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	0.030000	0.557214	
mm_119981.1	chr14	55575658	55575858	+	1	NA	NA	NA	84	NM_026808	68680	Mm.36758	NM_026808	ENSMUSG00000022215	Fitm1	1110028A07Rik|AV010547|Cg10671|Fit1	fat storage-inducing transmembrane protein 1	protein-coding	0.050000	0.661692	
mm_144197.1	chr18	7915926	7916126	+	1	NA	NA	NA	46829	NM_153085	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.000000	0.358209	
mm_16564.1	chr2	3335897	3336097	-	1	NA	NA	NA	-171	NM_030063	78245	Mm.99733	NM_030063	ENSMUSG00000026644	Acbd7	9230116B18Rik	acyl-Coenzyme A binding domain containing 7	protein-coding	0.025000	0.542289	
mm_56466.1	chr6	98941643	98941843	-	1	NA	NA	NA	86555	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.030000	0.442786	67(TCTTTTATACTT,+,0.00)
mm_2489.1	chr1	105990662	105990862	+	1	NA	NA	NA	356	NM_001122675	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.150000	0.766169	
mm_30737.1	chr4	13892108	13892308	+	1	NA	NA	NA	107426	NM_009822	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.010000	0.343284	
mm_129597.1	chr15	79834135	79834335	-	1	NA	NA	NA	98	NM_001013360	504193	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	0.140000	0.721393	
mm_138178.1	chr17	34267236	34267436	+	1	NA	NA	NA	4109	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.005000	0.517413	
mm_171510.1	chr4	146286959	146287159	+	1	NA	NA	NA	16674	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.000000	0.492537	
mm_159149.1	chr2	87943531	87943731	-	1	NA	NA	NA	-5	NM_146643	258636	Mm.377605	NM_146643	ENSMUSG00000075145	Olfr1155	MOR174-10	olfactory receptor 1155	protein-coding	0.005000	0.388060	
mm_31841.1	chr4	74251751	74251951	+	1	NA	NA	NA	-28	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.125000	0.731343	
mm_140158.1	chr17	80207392	80207592	+	1	NA	NA	NA	-187	NM_001195485	225027	Mm.292016	NM_146083	ENSMUSG00000024097	Srsf7	35kDa|9430065L19Rik|9G8|NX-96|Sfrs7	serine/arginine-rich splicing factor 7	protein-coding	0.060000	0.621891	
mm_88150.1	chr10	69533955	69534155	+	1	NA	NA	NA	347	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.020000	0.527363	57(CCCTAAATGGAC,+,0.00)
mm_48468.1	chr5	140830342	140830542	-	1	NA	NA	NA	-11	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.140000	0.766169	
mm_136935.1	chr17	14203643	14203843	+	1	NA	NA	NA	88	NM_172826	240025	Mm.79993	NM_172826	ENSMUSG00000048826	Dact2	2900084M21Rik|A630024E20|Dpr2|Frd2|dapper2	dishevelled-binding antagonist of beta-catenin 2	protein-coding	0.155000	0.766169	
mm_98801.1	chr11	97040992	97041192	+	1	NA	NA	NA	277	NM_027026	69297	Mm.250465	NM_027026	ENSMUSG00000020878	Lrrc46	1700006D24Rik	leucine rich repeat containing 46	protein-coding	0.040000	0.472637	
mm_33666.1	chr4	133176249	133176449	+	1	NA	NA	NA	-19306	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.005000	0.462687	
mm_130571.1	chr15	99458023	99458223	-	1	NA	NA	NA	-375	NM_001001884	380969	Mm.22915	NM_001001884	ENSMUSG00000023009	Nckap5l	C230021P08Rik|Cep169	NCK-associated protein 5-like	protein-coding	0.070000	0.567164	
mm_93934.1	chr10	127178996	127179196	-	1	NA	NA	NA	1549	NM_177615	216441	Mm.248373	NM_177615	ENSMUSG00000040441	Slc26a10	C78409|D630010I07	solute carrier family 26, member 10	protein-coding	0.030000	0.482587	
mm_162285.1	chr1	24177555	24177755	+	1	NA	NA	NA	45	NM_007740	12839	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding	0.005000	0.532338	9(CAGCTTAAAGGG,-,0.00)
mm_114324.1	chr13	60603495	60603695	+	1	NA	NA	NA	1384	NM_134062	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.005000	0.487562	
mm_135792.1	chr16	57189320	57189520	-	1	NA	NA	NA	-22088	NM_023175	52633	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.010000	0.402985	
mm_111259.1	chr12	85138638	85138838	-	1	NA	NA	NA	12526	NM_146244	238323	Mm.44829	NM_146244	ENSMUSG00000019235	Rps6kl1	A830084F09Rik|AW046440	ribosomal protein S6 kinase-like 1	protein-coding	0.035000	0.567164	
mm_86098.1	chr9	115298024	115298224	-	1	NA	NA	NA	12297	NM_024222	68292	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0.000000	0.338308	46(TAGTTTAAAAAG,-,0.00),48(GTTTAAAAAGAG,+,0.00)
mm_43458.1	chr5	136245424	136245624	+	1	NA	NA	NA	-584	NM_018825	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.040000	0.601990	
mm_78255.1	chr9	21826452	21826652	+	1	NA	NA	NA	-8958	NM_001080940	624219	Mm.440264	NM_001080940	ENSMUSG00000047822	Angptl8	EG624219|Gm6484|Rifl	angiopoietin-like 8	protein-coding	0.020000	0.492537	
mm_117365.1	chr13	70841642	70841842	-	1	NA	NA	NA	69	NM_172053	271127	Mm.115970	NM_172053	ENSMUSG00000049538	Adamts16	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	protein-coding	0.050000	0.621891	
mm_36233.1	chr4	63152579	63152779	-	1	NA	NA	NA	1493	NM_007443	11699	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.040000	0.547264	
mm_41336.1	chr5	90495982	90496182	+	1	NA	NA	NA	5368	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.020000	0.507463	
mm_150658.1	chr19	41981169	41981369	+	1	NA	NA	NA	-133	NM_028152	72199	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	0.090000	0.746269	
mm_112638.1	chr13	16014330	16014530	+	1	NA	NA	NA	2579	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.015000	0.457711	
mm_16566.1	chr2	3366481	3366681	-	1	NA	NA	NA	-12	NM_145921	99035	Mm.13808	NM_145921	ENSMUSG00000026645	Olah	AI607300|E230009B14Rik|Thedc1	oleoyl-ACP hydrolase	protein-coding	0.035000	0.512438	
mm_14339.1	chr2	129592939	129593139	+	1	NA	NA	NA	-130	NM_001291019	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.125000	0.726368	-100(CACCTTAAGAGG,-,0.00)
mm_64975.1	chr7	16816638	16816838	-	1	NA	NA	NA	-6	NM_173430	243853	Mm.39703	NM_173430	ENSMUSG00000048920	Fkrp	A830029B19Rik|AI842067|AI847300|LGMD1I|MDC1C	fukutin related protein	protein-coding	0.160000	0.830846	
mm_15939.1	chr2	165807452	165807652	+	1	NA	NA	NA	50621	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.025000	0.577114	
mm_129288.1	chr15	77163047	77163247	-	1	NA	NA	NA	-9335	NM_001286418	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.020000	0.512438	
mm_64236.1	chr7	141698612	141698812	+	1	NA	NA	NA	8372	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.040000	0.552239	
mm_115599.1	chr13	11876369	11876569	-	1	NA	NA	NA	230476	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.005000	0.398010	64(CCTTATAGAGGC,+,0.00)
mm_90203.1	chr10	120380617	120380817	+	1	NA	NA	NA	-8806	NR_040626	320626	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	0.020000	0.432836	
mm_21329.1	chr2	157101284	157101484	-	1	NA	NA	NA	14329	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.015000	0.502488	
mm_7786.1	chr1	131424838	131425038	-	1	NA	NA	NA	102423	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.000000	0.298507	39(TCTTTAATAGTT,+,0.00)
mm_55676.1	chr6	72598249	72598449	-	1	NA	NA	NA	64	NM_144917	232089	Mm.167232	NM_144917	ENSMUSG00000056698	Elmod3	AI844780|C330008I15Rik|RBM29|Rbed1	ELMO/CED-12 domain containing 3	protein-coding	0.070000	0.606965	
mm_66777.1	chr7	46908923	46909123	-	1	NA	NA	NA	10907	NM_021884	22088	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	0.005000	0.363184	46(GACTATTAAAAC,-,0.00)
mm_26110.1	chr3	137623642	137623842	+	1	NA	NA	NA	70	NM_030143	73284	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	0.095000	0.721393	
mm_78019.1	chr9	13708822	13709022	+	1	NA	NA	NA	-40259	NM_023858	77116	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.000000	0.313433	
mm_43963.1	chr5	145263820	145264020	+	1	NA	NA	NA	-19423	NM_001081431	666311	Mm.260773	NM_001081431	ENSMUSG00000070420	Zscan25	EG666311|Zfp498	zinc finger and SCAN domain containing 25	protein-coding	0.005000	0.417910	
mm_59056.1	chr7	19414140	19414340	+	1	NA	NA	NA	3146	NM_007710	12715	Mm.2375	NM_007710	ENSMUSG00000030399	Ckm	Ckmm|M-CK|MCK	creatine kinase, muscle	protein-coding	0.030000	0.547264	
mm_48514.1	chr5	142822746	142822946	-	1	NA	NA	NA	-5459	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.045000	0.477612	
mm_166406.1	chr5	136581546	136581746	-	1	NA	NA	NA	-14156	NM_001291238	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.035000	0.477612	
mm_158818.1	chrX	167330444	167330644	-	1	NA	NA	NA	27	NM_001290757	170743	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	0.025000	0.517413	
mm_68453.1	chr7	110061445	110061645	-	1	NA	NA	NA	-157	NM_009281	20841	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0.060000	0.552239	
mm_157193.1	chrX	12079965	12080165	-	1	NA	NA	NA	488	NM_175045	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.120000	0.766169	
mm_15686.1	chr2	163630913	163631113	+	1	NA	NA	NA	-13837	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.020000	0.462687	62(GGCTTGTAAAGG,-,0.00),81(GGCTAGAAAAGG,-,0.00)
mm_165293.1	chr2	91096790	91096990	+	1	NA	NA	NA	212	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.045000	0.656716	
mm_136894.1	chr17	13013380	13013580	+	1	NA	NA	NA	5641	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.015000	0.477612	
mm_148231.1	chr18	80440758	80440958	-	1	NA	NA	NA	28809	NM_026295	67655	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.010000	0.522388	
mm_76220.1	chr8	83572205	83572405	-	1	NA	NA	NA	5547	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.005000	0.582090	
mm_19589.1	chr2	101981911	101982111	-	1	NA	NA	NA	95749	NM_029635	76501	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0.005000	0.402985	
mm_72430.1	chr8	82863394	82863594	+	1	NA	NA	NA	138	NM_177378	330812	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	0.075000	0.641791	
mm_166622.1	chr6	72538142	72538342	+	1	NA	NA	NA	-6149	NM_007599	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.025000	0.577114	
mm_168270.1	chr10	93889596	93889796	-	1	NA	NA	NA	1506	NM_019648	56307	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	0.085000	0.666667	
mm_143907.1	chr17	84958445	84958645	-	1	NA	NA	NA	544	NM_001159496	19043	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.155000	0.791045	
mm_94917.1	chr11	29463642	29463842	+	1	NA	NA	NA	51291	NM_026465	67939	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0.005000	0.427861	
mm_18942.1	chr2	76764784	76764984	-	1	NA	NA	NA	89569	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.025000	0.432836	
mm_139927.1	chr17	71019430	71019630	+	1	NA	NA	NA	-27	NM_010867	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.015000	0.547264	-74(GGCCATAAAAGG,-,0.00)
mm_23044.1	chr3	34784029	34784229	+	1	NA	NA	NA	12054	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA	0.005000	0.407960	-7(TTTTTTAAAGCC,+,0.00)
mm_102730.1	chr11	67243383	67243583	-	1	NA	NA	NA	5671	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.015000	0.462687	
mm_90199.1	chr10	120227214	120227414	+	1	NA	NA	NA	254	NM_025431	66225	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.100000	0.706468	
mm_55156.1	chr6	51545202	51545402	-	1	NA	NA	NA	779	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.000000	0.512438	
mm_9204.1	chr1	171229619	171229819	-	1	NA	NA	NA	4630	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.015000	0.467662	
mm_2716.1	chr1	128143256	128143456	+	1	NA	NA	NA	40050	NM_181750	226412	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	0.015000	0.497512	
mm_45364.1	chr5	66004185	66004385	-	1	NA	NA	NA	0	NR_027961	231253	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.015000	0.522388	
mm_40701.1	chr5	65861042	65861242	+	1	NA	NA	NA	-2427	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.020000	0.552239	
mm_75072.1	chr8	33843468	33843668	-	1	NA	NA	NA	86295	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.030000	0.482587	38(AGCCATAAGAGG,-,0.00)
mm_118836.1	chr14	25607812	25608012	+	1	NA	NA	NA	4399	NM_001309430	100188919	Mm.473810	NM_001309430		Israa	-	immune system released activating agent	protein-coding	0.145000	0.731343	
mm_3046.1	chr1	134040370	134040570	+	1	NA	NA	NA	2955	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.025000	0.562189	
mm_89204.1	chr10	86685498	86685698	+	1	NA	NA	NA	71	NR_015572	66263	Mm.392261	NR_015572		1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	0.100000	0.641791	
mm_95179.1	chr11	41590913	41591113	+	1	NA	NA	NA	409701	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding	0.035000	0.437811	-88(ACCTTTAAAAAA,-,0.00)
mm_64669.1	chr7	4445513	4445713	-	1	NA	NA	NA	44	NM_175372	108841	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	0.075000	0.621891	
mm_23822.1	chr3	80800451	80800651	+	1	NA	NA	NA	2240	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.045000	0.582090	
mm_50468.1	chr6	48977153	48977353	+	1	NA	NA	NA	2110	NM_001029987	243376	Mm.244112	NM_001029987	ENSMUSG00000068536	Doxl2	-	diamine oxidase-like protein 2	protein-coding	0.010000	0.517413	
mm_13873.1	chr2	119872714	119872914	+	1	NA	NA	NA	-24414	NM_001164274	29808	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	0.140000	0.721393	
mm_53045.1	chr6	124712216	124712416	+	1	NA	NA	NA	27	NM_007531	12034	Mm.36241	NM_007531	ENSMUSG00000004264	Phb2	AU044498|BAP|Bap37|Bcap37|REA	prohibitin 2	protein-coding	0.115000	0.731343	
mm_78268.1	chr9	22002896	22003096	+	1	NA	NA	NA	8	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.080000	0.582090	
mm_7263.1	chr1	94052482	94052682	-	1	NA	NA	NA	-29	NM_008798	18566	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0.020000	0.611940	
mm_37564.1	chr4	126202541	126202741	-	1	NA	NA	NA	69	NM_146153	230753	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0.115000	0.666667	
mm_35022.1	chr4	3938278	3938478	-	1	NA	NA	NA	27	NM_019969	56711	Mm.331467	NM_019969	ENSMUSG00000003282	Plag1	-	pleiomorphic adenoma gene 1	protein-coding	0.115000	0.676617	
mm_171413.1	chr4	130047676	130047876	-	1	NA	NA	NA	-64	NM_028266	107581	Mm.41860	NM_028266	ENSMUSG00000040690	Col16a1	2700007F12Rik|A530052M23Rik|AI838662|CA1F	collagen, type XVI, alpha 1	protein-coding	0.085000	0.756219	
mm_170525.1	chr19	33456334	33456534	-	1	NA	NA	NA	61336	NM_001323386	628236		NM_001323386	ENSMUSG00000079344	Lipo4	Gm6857	lipase, member O4	protein-coding	0.025000	0.527363	
mm_126921.1	chr15	91643909	91644109	+	1	NA	NA	NA	-29215	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.005000	0.487562	
mm_164587.1	chr17	26509366	26509566	-	1	NA	NA	NA	-994	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.015000	0.512438	
mm_14494.1	chr2	131937367	131937567	+	1	NA	NA	NA	-13394	NM_001278257	26434	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion protein dublet	protein-coding	0.005000	0.447761	
mm_137939.1	chr17	32685491	32685691	+	1	NA	NA	NA	-40	NM_001346538	106648	Mm.26539	NM_134127	ENSMUSG00000073424	Cyp4f15	AI787289|Cyp4f-15	cytochrome P450, family 4, subfamily f, polypeptide 15	protein-coding	0.005000	0.537313	
mm_133853.1	chr16	96258562	96258762	+	1	NA	NA	NA	-22370	NM_033149	93961	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	0.030000	0.512438	
mm_4617.1	chr1	178766896	178767096	+	1	NA	NA	NA	237871	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.000000	0.432836	
mm_167330.1	chr8	70544088	70544288	-	1	NA	NA	NA	4513	NM_007924	13716	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0.015000	0.572139	
mm_83198.1	chr9	41157560	41157760	-	1	NA	NA	NA	-166	NM_176860	72828	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0.075000	0.641791	
mm_96928.1	chr11	70510969	70511169	+	1	NA	NA	NA	3547	NM_001013607	327956	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	0.005000	0.452736	
mm_170458.1	chr18	89989260	89989460	-	1	NA	NA	NA	-220224	NM_001039173	623279	Mm.447164	NM_001039173	ENSMUSG00000073514	Dok6	Dok-6	docking protein 6	protein-coding	0.015000	0.477612	
mm_86770.1	chr10	19957020	19957220	+	1	NA	NA	NA	22594	NM_008580	26408	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.010000	0.487562	
mm_5035.1	chr1	193303280	193303480	+	1	NA	NA	NA	1137	NM_001277928	16780	Mm.435441	NM_008484	ENSMUSG00000026639	Lamb3	-	laminin, beta 3	protein-coding	0.005000	0.522388	
mm_17738.1	chr2	32704031	32704231	-	1	NA	NA	NA	8653	NM_130860	107951	Mm.27557	NM_130860	ENSMUSG00000009555	Cdk9	PITALRE	cyclin-dependent kinase 9 (CDC2-related kinase)	protein-coding	0.005000	0.562189	
mm_81986.1	chr9	121403371	121403571	+	1	NA	NA	NA	36513	NM_175114	67095	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.025000	0.606965	
mm_171050.1	chr3	102935947	102936147	-	1	NA	NA	NA	53	NM_011516	20957	Mm.243849	NM_011516	ENSMUSG00000027855	Sycp1	SCP1	synaptonemal complex protein 1	protein-coding	0.095000	0.661692	
mm_168765.1	chr12	12022911	12023111	+	1	NA	NA	NA	-140112	NR_003964	627110	Mm.194735	NR_003964		Tubb2a-ps2	C79445	tubulin, beta 2a, pseudogene 2	pseudo	0.020000	0.407960	
mm_140179.1	chr17	80943742	80943942	+	1	NA	NA	NA	-790	NM_026516	68027	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0.010000	0.552239	
mm_18135.1	chr2	45019049	45019249	-	1	NA	NA	NA	4028	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.398010	
mm_172968.1	chr9	88956857	88957057	+	1	NA	NA	NA	37	NM_009742	12044	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0.015000	0.512438	
mm_149990.1	chr19	29252207	29252407	+	1	NA	NA	NA	504	NM_008413	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.020000	0.457711	
mm_12219.1	chr2	67648652	67648852	+	1	NA	NA	NA	-26705	NR_106083	102465706		NR_106083	ENSMUSG00000098299	Mir7224	Gm27971|mmu-mir-7224	microRNA 7224	ncRNA	0.010000	0.447761	
mm_82491.1	chr9	18473547	18473747	-	1	NA	NA	NA	-88	NM_028935	72230	Mm.289689	NM_028935	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	0.105000	0.631841	
mm_151131.1	chr19	48313249	48313449	+	1	NA	NA	NA	107324	NM_025696	66673	Mm.70980	NM_025696	ENSMUSG00000063434	Sorcs3	6330404A12Rik|AW045579	sortilin-related VPS10 domain containing receptor 3	protein-coding	0.015000	0.402985	
mm_77963.1	chr9	7764018	7764218	+	1	NA	NA	NA	41	NM_133739	71929	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0.110000	0.751244	
mm_89312.1	chr10	87923147	87923347	+	1	NA	NA	NA	-43424	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.462687	
mm_142527.1	chr17	46433608	46433808	-	1	NA	NA	NA	4766	NM_181664	114570	Mm.25168	NM_053250	ENSMUSG00000023968	Crip3	TLP|TLP-A|TLP-B|Tlmp	cysteine-rich protein 3	protein-coding	0.020000	0.587065	
mm_155467.1	chrX	73639292	73639492	+	1	NA	NA	NA	-49	NM_029352	75590	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	0.070000	0.661692	
mm_108543.1	chr12	84317025	84317225	+	1	NA	NA	NA	266	NM_001252583	52708	Mm.255150	NM_144833	ENSMUSG00000042472	Zfp410	Apa1|D12Ertd748e|Znf410	zinc finger protein 410	protein-coding	0.095000	0.671642	
mm_137812.1	chr17	30005796	30005996	+	1	NA	NA	NA	809	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.010000	0.402985	
mm_81451.1	chr9	109816556	109816756	+	1	NA	NA	NA	29	NM_183136	78709	Mm.99613	NM_183136	ENSMUSG00000050074	Spink8	C630041L24Rik	serine peptidase inhibitor, Kazal type 8	protein-coding	0.020000	0.532338	
mm_85607.1	chr9	107605013	107605213	-	1	NA	NA	NA	289	NM_009153	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.045000	0.671642	
mm_98788.1	chr11	96929237	96929437	+	1	NA	NA	NA	13	NM_146026	217138	Mm.342551	NM_146026	ENSMUSG00000047040	Prr15l	Atad4|BC022765|E230006A12Rik	proline rich 15-like	protein-coding	0.020000	0.606965	
mm_87659.1	chr10	58485659	58485859	+	1	NA	NA	NA	-12178	NM_001162956	76138	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.005000	0.402985	
mm_28795.1	chr3	96057749	96057949	-	1	NA	NA	NA	606	NM_013841	22365	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	0.045000	0.577114	
mm_11078.1	chr2	27709148	27709348	+	1	NA	NA	NA	-44	NM_001290481	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.000000	0.537313	-58(CCCTAGAAATGG,-,0.00)
mm_87647.1	chr10	58400412	58400612	+	1	NA	NA	NA	6139	NM_001346676	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.005000	0.333333	
mm_135065.1	chr16	34191685	34191885	-	1	NA	NA	NA	-224782	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.015000	0.442786	76(AAGTTTAAAAGC,-,0.00)
mm_168570.1	chr11	69921289	69921489	-	1	NA	NA	NA	-3	NM_181582	276770	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.075000	0.636816	
mm_94790.1	chr11	22735414	22735614	+	1	NA	NA	NA	124221	NM_016888	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.015000	0.497512	
mm_81854.1	chr9	118703298	118703498	+	1	NA	NA	NA	-8294	NM_001113514	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.015000	0.552239	
mm_134890.1	chr16	29541450	29541650	-	1	NA	NA	NA	-67	NM_001164612	224079	Mm.54954	NM_172613	ENSMUSG00000038094	Atp13a4	4631413J11Rik|4832416L12|9330174J19Rik	ATPase type 13A4	protein-coding	0.025000	0.532338	
mm_145578.1	chr18	60963554	60963754	+	1	NA	NA	NA	100	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.015000	0.587065	
mm_89233.1	chr10	87566007	87566207	+	1	NA	NA	NA	44312	NM_008777	18478	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0.010000	0.437811	
mm_32171.1	chr4	100478739	100478939	+	1	NA	NA	NA	-28	NM_001033773	381534	Mm.318133	NM_001033773	ENSMUSG00000069733	Ube2u	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding	0.030000	0.507463	
mm_78260.1	chr9	21927520	21927720	+	1	NA	NA	NA	-85	NM_001253870	235043	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0.065000	0.606965	
mm_62535.1	chr7	102249608	102249808	+	1	NA	NA	NA	410	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.045000	0.611940	
mm_60617.1	chr7	44595933	44596133	+	1	NA	NA	NA	5147	NM_001290682	16504	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.035000	0.631841	
mm_127273.1	chr15	99725551	99725751	+	1	NA	NA	NA	33	NM_183256	66379	Mm.5265	NM_183256	ENSMUSG00000023020	Cox14	2310016M24Rik|AA959804	cytochrome c oxidase assembly protein 14	protein-coding	0.065000	0.606965	
mm_58345.1	chr6	147243725	147243925	-	1	NA	NA	NA	20188	NM_008970	19227	Mm.28440	NM_008970	ENSMUSG00000048776	Pthlh	PLP|PTH-like|Pthrp	parathyroid hormone-like peptide	protein-coding	0.025000	0.487562	72(CCCTTTCAAGGC,+,0.00)
mm_105246.1	chr11	102349664	102349864	-	1	NA	NA	NA	15517	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.010000	0.582090	
mm_96705.1	chr11	69655463	69655663	+	1	NA	NA	NA	526	NM_009235	20670	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0.070000	0.631841	
mm_37047.1	chr4	115964122	115964322	-	1	NA	NA	NA	-24296	NM_130865	140477	Mm.213206	NM_130865	ENSMUSG00000028707	Dmbx1	Atx|Cdmx|Mbx|Otx3	diencephalon/mesencephalon homeobox 1	protein-coding	0.020000	0.497512	-67(GTTTTAAGAGGC,+,0.00)
mm_19693.1	chr2	103485673	103485873	-	1	NA	NA	NA	-620	NM_009804	12359	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0.025000	0.567164	
mm_110452.1	chr12	51636567	51636767	-	1	NA	NA	NA	43326	NM_001198835	12810	Mm.21325	NM_007728	ENSMUSG00000020953	Coch	AW122937|Coch-5B2|D12H14S564E	cochlin	protein-coding	0.010000	0.323383	-87(CTCTCTTAAAAG,-,0.00),-49(TCTTATAAAGCA,+,0.00),-7(TTTTTTATAGCT,+,0.00)
mm_24439.1	chr3	90600111	90600311	+	1	NA	NA	NA	-4	NM_011310	20197	Mm.440044	NM_011310	ENSMUSG00000001021	S100a3	S100E	S100 calcium binding protein A3	protein-coding	0.015000	0.547264	
mm_142363.1	chr17	44105590	44105790	-	1	NA	NA	NA	118	NM_199016	224794	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90|mKIAA0879	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	0.115000	0.681592	
mm_66135.1	chr7	31110788	31110988	-	1	NA	NA	NA	109	NM_001276269	15451	Mm.19182	NM_008281	ENSMUSG00000001249	Hpn	Hlb320	hepsin	protein-coding	0.055000	0.532338	
mm_23504.1	chr3	60528416	60528616	+	1	NA	NA	NA	27337	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.010000	0.457711	
mm_104941.1	chr11	100117347	100117547	-	1	NA	NA	NA	3130	NM_001313949	16663	Mm.4646	NM_010662	ENSMUSG00000044041	Krt13	CK13|K13|Krt-1.13|Krt1-13	keratin 13	protein-coding	0.005000	0.502488	
mm_7281.1	chr1	97661530	97661730	-	1	NA	NA	NA	388	NM_133825	52392	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.130000	0.761194	
mm_36949.1	chr4	109102515	109102715	-	1	NA	NA	NA	15421	NM_173350	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.020000	0.398010	
mm_171469.1	chr4	145781367	145781567	+	1	NA	NA	NA	-76	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.040000	0.502488	
mm_45562.1	chr5	73191855	73192055	-	1	NA	NA	NA	64663	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.035000	0.502488	
mm_61851.1	chr7	88297151	88297351	+	1	NA	NA	NA	19166	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.010000	0.417910	
mm_26491.1	chr3	145292453	145292653	+	1	NA	NA	NA	81	NM_001317733	71355	Mm.235570	NM_027770	ENSMUSG00000028197	Col24a1	5430404K19Rik	collagen, type XXIV, alpha 1	protein-coding	0.055000	0.557214	
mm_158598.1	chrX	151414462	151414662	-	1	NA	NA	NA	70339	NM_198105	207375	Mm.391339	NM_198105	ENSMUSG00000025262	Fam120c	D930001I21Rik|ORF34	family with sequence similarity 120, member C	protein-coding	0.045000	0.512438	-90(CACCATAAAAAA,-,0.00)
mm_117500.1	chr13	78199896	78200096	-	1	NA	NA	NA	-1123	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.010000	0.323383	
mm_27363.1	chr3	50434291	50434491	-	1	NA	NA	NA	9222	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.393035	-36(CTACATAAAAGC,-,0.00)
mm_74876.1	chr8	25052745	25052945	-	1	NA	NA	NA	-13883	NM_001081187	330723	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0.015000	0.527363	
mm_95120.1	chr11	34078409	34078609	+	1	NA	NA	NA	31308	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.020000	0.462687	
mm_170055.1	chr17	30005072	30005272	+	1	NA	NA	NA	85	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.170000	0.825871	
mm_84819.1	chr9	77544746	77544946	-	1	NA	NA	NA	6	NM_001146048	214345	Mm.28534	NM_172528	ENSMUSG00000032352	Lrrc1	A430093J20Rik|AU016091|D030059I21|mKIAA4018	leucine rich repeat containing 1	protein-coding	0.175000	0.751244	
mm_39149.1	chr4	155397920	155398120	-	1	NA	NA	NA	49	NM_008072	14403	Mm.388925	NM_008072	ENSMUSG00000029054	Gabrd	AI853201	gamma-aminobutyric acid (GABA) A receptor, subunit delta	protein-coding	0.100000	0.711443	
mm_28130.1	chr3	87112173	87112373	-	1	NA	NA	NA	62474	NM_001170985	170643	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kin of IRRE like (Drosophila)	protein-coding	0.010000	0.477612	
mm_61034.1	chr7	49558499	49558699	+	1	NA	NA	NA	78236	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.030000	0.507463	
mm_165499.1	chr2	167349061	167349261	-	1	NA	NA	NA	17	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.170000	0.835821	
mm_99785.1	chr11	107337938	107338138	+	1	NA	NA	NA	132682	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.010000	0.447761	
mm_133855.1	chr16	96273374	96273574	+	1	NA	NA	NA	-7558	NM_033149	93961	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	0.015000	0.537313	
mm_136844.1	chr17	12762832	12763032	+	1	NA	NA	NA	6774	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.015000	0.492537	
mm_30260.1	chr3	146747939	146748139	-	1	NA	NA	NA	22199	NM_001164198	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.040000	0.467662	
mm_168303.1	chr11	106725157	106725357	+	1	NA	NA	NA	-9976	NM_001305157	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.030000	0.487562	-26(ACCTTTTAAAGA,-,0.00),-25(CCTTTTAAAGAA,+,0.00)
mm_13227.1	chr2	97480017	97480217	+	1	NA	NA	NA	12460	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.010000	0.388060	
mm_70994.1	chr8	27447608	27447808	+	1	NA	NA	NA	38	NM_027618	70952	Mm.158160	NM_026256	ENSMUSG00000063932	Poteg	4921537P18Rik|4930456F22Rik|Gsarp1|Gsarp2	POTE ankyrin domain family, member G	protein-coding	0.020000	0.502488	
mm_830.1	chr1	51289200	51289400	+	1	NA	NA	NA	174	NM_138741	20324	Mm.398690	NM_138741	ENSMUSG00000045954	Sdpr	-	serum deprivation response	protein-coding	0.010000	0.527363	-80(TCCTTTAAGAGC,-,0.00),-79(CCTTTAAGAGCA,+,0.00)
mm_67607.1	chr7	83794765	83794965	-	1	NA	NA	NA	-26	NM_029335	75556	Mm.17649	NM_029335	ENSMUSG00000011154	Cfap161	1700026D08Rik|AW047638|AW551802	cilia and flagella associated protein 161	protein-coding	0.040000	0.567164	
mm_120227.1	chr14	62857478	62857678	+	1	NA	NA	NA	-7964	NR_105860	102465311		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.005000	0.368159	12(CCATATATACAC,+,0.00)
mm_106160.1	chr11	116626831	116627031	-	1	NA	NA	NA	88	NM_172572	217344	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.030000	0.616915	
mm_77773.1	chr9	3015610	3015810	+	1	NA	NA	NA	23033	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.015000	0.323383	
mm_98411.1	chr11	94363849	94364049	+	1	NA	NA	NA	29027	NM_029600	76408	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.010000	0.547264	
mm_94318.1	chr11	4236703	4236903	+	1	NA	NA	NA	18	NM_001013365	18413	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.030000	0.611940	
mm_121015.1	chr14	79536131	79536331	+	1	NA	NA	NA	20557	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.015000	0.492537	
mm_112234.1	chr12	113482248	113482448	-	1	NA	NA	NA	-7217	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.532338	
mm_63143.1	chr7	123158575	123158775	+	1	NA	NA	NA	34790	NM_144925	233833	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0.015000	0.393035	
mm_53599.1	chr6	138142758	138142958	+	1	NA	NA	NA	1264	NM_001347489	56615	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.025000	0.537313	
mm_159413.1	chr3	104777435	104777635	-	1	NA	NA	NA	12	NM_183224	329731	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	0.085000	0.651741	
mm_134836.1	chr16	26358691	26358891	-	1	NA	NA	NA	13048	NM_016674	12737	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding	0.005000	0.442786	
mm_28010.1	chr3	83042362	83042562	-	1	NA	NA	NA	7401	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.010000	0.502488	
mm_143860.1	chr17	84186086	84186286	-	1	NA	NA	NA	1761	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.160000	0.766169	
mm_155249.1	chrX	57223637	57223837	+	1	NA	NA	NA	11594	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.000000	0.452736	
mm_145739.1	chr18	64265290	64265490	+	1	NA	NA	NA	11031	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.075000	0.641791	
mm_125793.1	chr15	74784010	74784210	+	1	NA	NA	NA	-5251	NR_027837	78725	Mm.171357	NM_172433	ENSMUSG00000101026	D730001G18Rik	Ly6g6g	RIKEN cDNA D730001G18 gene	ncRNA	0.030000	0.552239	
mm_139929.1	chr17	71019492	71019692	+	1	NA	NA	NA	35	NM_001083934	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.020000	0.547264	
mm_96999.1	chr11	70718848	70719048	+	1	NA	NA	NA	12958	NR_105890	102465557		NR_105890	ENSMUSG00000105932	Mir6925	mmu-mir-6925	microRNA 6925	ncRNA	0.010000	0.517413	
mm_155771.1	chrX	96255486	96255686	+	1	NA	NA	NA	12769	NR_029801	723814		NR_029801	ENSMUSG00000076066	Mir223	Mirn223|miR-223|mmu-mir-223	microRNA 223	ncRNA	0.000000	0.388060	
mm_153518.1	chr19	41665926	41666126	-	1	NA	NA	NA	77375	NR_106166	102465884		NR_106166	ENSMUSG00000098286	Mir8091	Gm27575|mmu-mir-8091	microRNA 8091	ncRNA	0.005000	0.502488	
mm_104341.1	chr11	94202099	94202299	-	1	NA	NA	NA	-9255	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.015000	0.447761	
mm_98368.1	chr11	93995991	93996191	+	1	NA	NA	NA	0	NM_001199203	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.140000	0.835821	
mm_102868.1	chr11	69407513	69407713	-	1	NA	NA	NA	6062	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.020000	0.552239	-85(GGGCCTTAAAGG,-,0.00)
mm_159955.1	chr6	86526031	86526231	-	1	NA	NA	NA	34	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.185000	0.815920	
mm_71147.1	chr8	39298071	39298271	+	1	NA	NA	NA	191	NR_044988	621335	Mm.208080	NR_044988	ENSMUSG00000109827	Gm6213	EG621335	predicted gene 6213	ncRNA	0.025000	0.447761	-33(CTCTATATAGCA,+,0.00),18(GCTTTTAGATGA,+,0.00)
mm_160435.1	chr8	94136856	94137056	+	1	NA	NA	NA	-248	NM_008631	17752	Mm.1536	NM_008631	ENSMUSG00000031757	Mt4	MT-IV	metallothionein 4	protein-coding	0.010000	0.557214	
mm_19244.1	chr2	84727264	84727464	-	1	NA	NA	NA	-96	NM_133840	98985	Mm.21583	NM_133840	ENSMUSG00000027079	Clp1	AI462438|Heab	CLP1, cleavage and polyadenylation factor I subunit	protein-coding	0.095000	0.572139	
mm_28393.1	chr3	90020851	90021051	-	1	NA	NA	NA	-9741	NR_106129	102465771		NR_106129	ENSMUSG00000098397	Mir7669	Gm27996|mmu-mir-7669	microRNA 7669	ncRNA	0.015000	0.522388	
mm_73069.1	chr8	94434249	94434449	+	1	NA	NA	NA	754	NR_015514	320377	Mm.486022	NR_015514		9330175E14Rik	A630085K21	RIKEN cDNA 9330175E14 gene	ncRNA	0.090000	0.621891	
mm_75438.1	chr8	47352394	47352594	-	1	NA	NA	NA	-146	NM_175162	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.025000	0.527363	
mm_15763.1	chr2	164316612	164316812	+	1	NA	NA	NA	-39	NM_013679	20945	Mm.439686	NM_013679	ENSMUSG00000017000	Svs6	MSVSP99|Svp6	seminal vesicle secretory protein 6	protein-coding	0.000000	0.482587	
mm_69792.1	chr7	141100471	141100671	-	1	NA	NA	NA	-25	NM_023059	24058	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0.080000	0.651741	
mm_72695.1	chr8	84971135	84971335	+	1	NA	NA	NA	1613	NM_011563	21672	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0.010000	0.577114	
mm_145090.1	chr18	42536164	42536364	+	1	NA	NA	NA	24777	NR_110344	56070	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	0.010000	0.452736	
mm_102086.1	chr11	52282201	52282401	-	1	NA	NA	NA	294	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.025000	0.552239	
mm_105338.1	chr11	102994620	102994820	-	1	NA	NA	NA	5201	NR_105896	102466988		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.030000	0.587065	
mm_159174.1	chr2	109676985	109677185	+	1	NA	NA	NA	53	NM_001285419	12064	Mm.1442	NM_007540	ENSMUSG00000048482	Bdnf	-	brain derived neurotrophic factor	protein-coding	0.040000	0.557214	
mm_85184.1	chr9	96685232	96685432	-	1	NA	NA	NA	46343	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.000000	0.238806	
mm_10350.1	chr2	11689771	11689971	+	1	NA	NA	NA	-15422	NM_001271498	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.015000	0.452736	
mm_28690.1	chr3	95518946	95519146	-	1	NA	NA	NA	-7740	NM_021281	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.025000	0.517413	
mm_63979.1	chr7	139978844	139979044	+	1	NA	NA	NA	-189	NM_001347613	381933	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0.020000	0.343284	
mm_53678.1	chr6	142161393	142161593	+	1	NA	NA	NA	24656	NM_023718	28254	Mm.38953	NM_023718	ENSMUSG00000079262	Slco1a6	4930422F19Rik|AI790453|Oatp-5|Oatp5|Slc21a13	solute carrier organic anion transporter family, member 1a6	protein-coding	0.010000	0.368159	
mm_74156.1	chr8	123397669	123397869	+	1	NA	NA	NA	-9313	NM_008559	17199	Mm.324942	NM_008559	ENSMUSG00000074037	Mc1r	Mcr1|Mshra|Tob|e	melanocortin 1 receptor	protein-coding	0.005000	0.512438	
mm_75133.1	chr8	34979804	34980004	-	1	NA	NA	NA	-14214	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.015000	0.507463	
mm_148531.1	chr19	4558712	4558912	+	1	NA	NA	NA	-35507	NM_008797	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.005000	0.542289	
mm_30402.1	chr3	152252994	152253194	-	1	NA	NA	NA	13226	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.005000	0.348259	
mm_151611.1	chr19	3897451	3897651	-	1	NA	NA	NA	7679	NM_016921	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.010000	0.517413	
mm_26763.1	chr3	8692794	8692994	-	1	NA	NA	NA	-25856	NM_010423	15213	Mm.29581	NM_010423	ENSMUSG00000040289	Hey1	AI316788|AI414254|CHF2|HRT1|Herp2|Hesr1|bHLHb31|hesr-1	hairy/enhancer-of-split related with YRPW motif 1	protein-coding	0.015000	0.442786	
mm_1952.1	chr1	86356950	86357150	+	1	NA	NA	NA	-723	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.005000	0.457711	
mm_36679.1	chr4	96507298	96507498	-	1	NA	NA	NA	-12	NM_001104927	665095	Mm.331717	NM_001104927	ENSMUSG00000082932	Cyp2j8	Cyp2j8-ps|OTTMUSG00000007938	cytochrome P450, family 2, subfamily j, polypeptide 8	protein-coding	0.000000	0.482587	
mm_85339.1	chr9	102628828	102629028	-	1	NA	NA	NA	2632	NM_181394	69010	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	0.010000	0.542289	
mm_62366.1	chr7	100607487	100607687	+	1	NA	NA	NA	1	NM_001163663	19346	Mm.28650	NM_024287	ENSMUSG00000030704	Rab6a	2610028L11Rik|AA419671|Rab6	RAB6A, member RAS oncogene family	protein-coding	0.095000	0.616915	
mm_6556.1	chr1	75141412	75141612	-	1	NA	NA	NA	856	NM_026977	69171	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0.070000	0.636816	
mm_1102.1	chr1	59763453	59763653	+	1	NA	NA	NA	-726	NM_007561	12168	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0.085000	0.701493	
mm_138572.1	chr17	35393998	35394198	+	1	NA	NA	NA	-1	NR_051981	15016	Mm.439648	NR_051981	ENSMUSG00000055413	H2-Q5	H-2Q5|Qa-5|Qa5|Qat-5	histocompatibility 2, Q region locus 5	pseudo	0.085000	0.616915	
mm_146616.1	chr18	10090802	10091002	-	1	NA	NA	NA	-60753	NM_001038589	59025	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0.015000	0.393035	
mm_66883.1	chr7	58759354	58759554	-	1	NA	NA	NA	101252	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.010000	0.462687	
mm_80053.1	chr9	69314694	69314894	+	1	NA	NA	NA	24953	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.020000	0.393035	
mm_127704.1	chr15	102990907	102991107	+	1	NA	NA	NA	468	NM_010466	15426	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.085000	0.641791	65(CCCTTTATGGGG,+,0.00)
mm_133351.1	chr16	84557059	84557259	+	1	NA	NA	NA	-122630	NR_040537	78023	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0.005000	0.447761	
mm_43798.1	chr5	142817962	142818162	+	1	NA	NA	NA	-675	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.035000	0.621891	
mm_11009.1	chr2	26580932	26581132	+	1	NA	NA	NA	-24	NM_178444	353156	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0.020000	0.611940	
mm_23454.1	chr3	60472102	60472302	+	1	NA	NA	NA	-628	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.000000	0.422886	
mm_118979.1	chr14	28152237	28152437	+	1	NA	NA	NA	-353136	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.005000	0.532338	
mm_80833.1	chr9	97103819	97104019	+	1	NA	NA	NA	7122	NM_138756	192287	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.000000	0.482587	
mm_23432.1	chr3	59091781	59091981	+	1	NA	NA	NA	9940	NM_173398	229323	Mm.123648	NM_173398	ENSMUSG00000050075	Gpr171	A630006E05|F730001G15Rik|H963	G protein-coupled receptor 171	protein-coding	0.000000	0.278607	
mm_39495.1	chr5	21054889	21055089	+	1	NA	NA	NA	808	NM_011203	19248	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.030000	0.542289	
mm_77054.1	chr8	109578685	109578885	-	1	NA	NA	NA	387	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.005000	0.368159	
mm_57696.1	chr6	128522031	128522231	-	1	NA	NA	NA	4589	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.005000	0.432836	
mm_111026.1	chr12	79132076	79132276	-	1	NA	NA	NA	1388	NM_009705	11847	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.005000	0.487562	
mm_34735.1	chr4	152190417	152190617	+	1	NA	NA	NA	4383	NM_001146057	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.020000	0.502488	60(GGGTTTAAAAGT,-,0.00)
mm_54246.1	chr6	28259829	28260029	-	1	NA	NA	NA	1672	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.015000	0.313433	-100(TCTTAAAAGGAC,+,0.00)
mm_173050.1	chrX	121452535	121452735	+	1	NA	NA	NA	944750	NM_138742	54561	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	0.015000	0.477612	
mm_162258.1	chrX	169828034	169828234	+	1	NA	NA	NA	-25	NM_001290504	17318	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	0.015000	0.507463	
mm_21161.1	chr2	154603544	154603744	-	1	NA	NA	NA	29	NM_021534	59038	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	0.070000	0.671642	
mm_49518.1	chr6	29894630	29894830	+	1	NA	NA	NA	-22283	NM_001037740	320609	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0.010000	0.482587	
mm_59050.1	chr7	19381929	19382129	+	1	NA	NA	NA	-10	NM_007949	13871	Mm.36524	NM_007949	ENSMUSG00000030400	Ercc2	AA407812|AU020867|AW240756|CXPD|Ercc-2|Mhdarco15|RCO015|XPD	excision repair cross-complementing rodent repair deficiency, complementation group 2	protein-coding	0.105000	0.651741	
mm_95396.1	chr11	49663512	49663712	+	1	NA	NA	NA	17	NM_170727	68662	Mm.22802	NM_054037	ENSMUSG00000064057	Scgb3a1	HIN-1|LuLeu2|Pnsp2|UGRP2|Utgrp2	secretoglobin, family 3A, member 1	protein-coding	0.005000	0.507463	
mm_68537.1	chr7	113388471	113388671	-	1	NA	NA	NA	2	NM_020623	19226	Mm.284168	NM_020623	ENSMUSG00000059077	Pth	Pthp	parathyroid hormone	protein-coding	0.005000	0.457711	
mm_74088.1	chr8	122564493	122564693	+	1	NA	NA	NA	-3422	NM_026014	67177	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0.020000	0.442786	
mm_106674.1	chr11	121741490	121741690	-	1	NA	NA	NA	39163	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.005000	0.482587	
mm_97402.1	chr11	77840183	77840383	+	1	NA	NA	NA	38985	NM_001291215	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.005000	0.587065	
mm_46353.1	chr5	102913100	102913300	-	1	NA	NA	NA	68193	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.060000	0.592040	
mm_81086.1	chr9	106281280	106281480	+	1	NA	NA	NA	319	NM_027354	70235	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	0.075000	0.641791	
mm_76730.1	chr8	95020895	95021095	-	1	NA	NA	NA	3303	NM_173036	54672	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.040000	0.587065	
mm_3871.1	chr1	160989509	160989709	+	1	NA	NA	NA	11003	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.030000	0.542289	
mm_80849.1	chr9	98296808	98297008	+	1	NA	NA	NA	325	NM_144533	74080	Mm.294082	NM_144533	ENSMUSG00000032456	Nmnat3	4933408N02Rik|PNAT3	nicotinamide nucleotide adenylyltransferase 3	protein-coding	0.100000	0.597015	
mm_58352.1	chr6	147531180	147531380	-	1	NA	NA	NA	55409	NM_025911	67015	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding	0.005000	0.492537	
mm_147568.1	chr18	54992433	54992633	-	1	NA	NA	NA	-2353	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.015000	0.442786	
mm_162391.1	chr1	75885329	75885529	+	1	NA	NA	NA	339163	NM_009208	20536	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	0.000000	0.353234	
mm_129071.1	chr15	75664087	75664287	-	1	NA	NA	NA	14603	NM_028404	72960	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	0.035000	0.572139	
mm_16402.1	chr2	180024809	180025009	+	1	NA	NA	NA	-78	NM_177727	241846	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	0.135000	0.746269	
mm_75619.1	chr8	64609008	64609208	-	1	NA	NA	NA	84001	NM_013494	12876	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|R74677|fat	carboxypeptidase E	protein-coding	0.050000	0.527363	
mm_159818.1	chr5	122047758	122047958	-	1	NA	NA	NA	-33	NM_007804	13048	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2|ENSMUSG00000072641	cut-like homeobox 2	protein-coding	0.010000	0.562189	
mm_122157.1	chr14	31374222	31374422	-	1	NA	NA	NA	37598	NM_009796	12339	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.010000	0.497512	-58(CACTTTTTAGGG,-,0.00),-56(CTTTTTAGGGGT,+,0.00)
mm_85342.1	chr9	103201983	103202183	-	1	NA	NA	NA	-18	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.095000	0.626866	
mm_69809.1	chr7	141231396	141231596	-	1	NA	NA	NA	2708	NM_001081118	101471	Mm.248656	NM_207211	ENSMUSG00000038611	Phrf1	AA673488	PHD and ring finger domains 1	protein-coding	0.005000	0.388060	
mm_104352.1	chr11	94297729	94297929	-	1	NA	NA	NA	24082	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.020000	0.422886	
mm_161052.1	chr12	55230341	55230541	+	1	NA	NA	NA	-37	NM_001100110	100101806	Mm.471968	NM_001100110	ENSMUSG00000079108	Srp54c	E330029E12Rik	signal recognition particle 54C	protein-coding	0.075000	0.611940	
mm_29353.1	chr3	108445097	108445297	-	1	NA	NA	NA	62	NM_011319	20226	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0.075000	0.631841	
mm_157164.1	chrX	9466629	9466829	-	1	NA	NA	NA	2595	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.328358	
mm_31657.1	chr4	59879927	59880127	+	1	NA	NA	NA	35029	NM_021053	30936	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0.000000	0.422886	
mm_84854.1	chr9	78481638	78481838	-	1	NA	NA	NA	-14	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.090000	0.681592	34(CGGTATATAAGT,-,0.00)
mm_125589.1	chr15	59620172	59620372	+	1	NA	NA	NA	-28382	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.015000	0.457711	
mm_10518.1	chr2	16356670	16356870	+	1	NA	NA	NA	466	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.080000	0.626866	
mm_29857.1	chr3	130041273	130041473	-	1	NA	NA	NA	19534	NM_207209	99683	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.010000	0.437811	
mm_115160.1	chr13	107063646	107063846	+	1	NA	NA	NA	41176	NR_015471	100040322	Mm.133867	NR_015471		3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.005000	0.398010	
mm_100422.1	chr11	119441491	119441691	+	1	NA	NA	NA	-49756	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.020000	0.542289	
mm_123880.1	chr14	72709352	72709552	-	1	NA	NA	NA	551	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.120000	0.721393	
mm_158860.1	chrY	942914	943114	+	1	NA	NA	NA	45226	NM_011419	20592	Mm.262676	NM_011419	ENSMUSG00000056673	Kdm5d	HY|Jarid1d|Smcy	lysine (K)-specific demethylase 5D	protein-coding	0.000000	0.373134	
mm_61513.1	chr7	78888258	78888458	+	1	NA	NA	NA	81	NR_029826	723884		NR_029826	ENSMUSG00000065609	Mir7-2	Mir7a2|Mirn7-2|mir-7a-2|mir-7a2|mmu-mir-7-2|mmu-mir-7a2	microRNA 7-2	ncRNA	0.025000	0.512438	
mm_45531.1	chr5	72736504	72736704	-	1	NA	NA	NA	-2	NM_013698	22165	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.020000	0.482587	
mm_91910.1	chr10	60292477	60292677	-	1	NA	NA	NA	8116	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.020000	0.527363	
mm_70885.1	chr8	25518537	25518737	+	1	NA	NA	NA	-122	NM_001079909	14182	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.035000	0.597015	
mm_29778.1	chr3	127408859	127409059	-	1	NA	NA	NA	99	NM_001327939	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.040000	0.606965	
mm_101589.1	chr11	34681757	34681957	-	1	NA	NA	NA	102048	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.020000	0.368159	
mm_170249.1	chr17	94887070	94887270	+	1	NA	NA	NA	22252	NM_001024731	100044193		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	0.000000	0.457711	
mm_78616.1	chr9	37555521	37555721	+	1	NA	NA	NA	-2876	NM_022029	64011	Mm.335065	NM_022029	ENSMUSG00000053310	Nrgn	0710001B06Rik|AI838505|NG|NG/RC3|Pss1|R75334|RC3	neurogranin	protein-coding	0.005000	0.507463	
mm_95716.1	chr11	54516701	54516901	+	1	NA	NA	NA	-6044	NM_001252494	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.000000	0.298507	
mm_72645.1	chr8	84703303	84703503	+	1	NA	NA	NA	1946	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.005000	0.492537	
mm_154191.1	chr19	58822447	58822647	-	1	NA	NA	NA	-28133	NM_026208	67507	Mm.27027	NM_026208	ENSMUSG00000026931	1700019N19Rik	-	RIKEN cDNA 1700019N19 gene	protein-coding	0.035000	0.547264	
mm_21911.1	chr2	166581894	166582094	-	1	NA	NA	NA	-90724	NR_105783	102465188		NR_105783	ENSMUSG00000098675	Mir6364	Gm27327|mmu-mir-6364	microRNA 6364	ncRNA	0.030000	0.567164	
mm_871.1	chr1	52153743	52153943	+	1	NA	NA	NA	34221	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.025000	0.522388	
mm_23864.1	chr3	83012838	83013038	+	1	NA	NA	NA	5214	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.060000	0.532338	
mm_42237.1	chr5	113735917	113736117	+	1	NA	NA	NA	235	NM_001010825	231630	Mm.21926	NM_001010825	ENSMUSG00000053334	Ficd	D5Ertd40e|Hype	FIC domain containing	protein-coding	0.105000	0.671642	
mm_89911.1	chr10	111174711	111174911	+	1	NA	NA	NA	10009	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.005000	0.412935	1(CCTTTTAAATAA,+,0.00)
mm_5495.1	chr1	36943705	36943905	-	1	NA	NA	NA	-4278	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.015000	0.537313	
mm_7311.1	chr1	98057607	98057807	-	1	NA	NA	NA	-9914	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA	0.015000	0.437811	
mm_52177.1	chr6	99264372	99264572	+	1	NA	NA	NA	2043	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.020000	0.497512	
mm_44407.1	chr5	17848832	17849032	-	1	NA	NA	NA	860	NM_001159557	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.388060	
mm_71483.1	chr8	46739718	46739918	+	1	NA	NA	NA	73	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.045000	0.502488	
mm_53036.1	chr6	124570210	124570410	+	1	NA	NA	NA	-120	NM_001113356	667277	Mm.481484	NM_001113356	ENSMUSG00000098470	C1rb	Gm8551|mC1rB	complement component 1, r subcomponent B	protein-coding	0.010000	0.482587	
mm_157926.1	chrX	79635481	79635681	-	1	NA	NA	NA	1	NM_001113734	71967	Mm.379207	NM_028025	ENSMUSG00000046942	Mageb16	2410003J06Rik	melanoma antigen family B, 16	protein-coding	0.045000	0.482587	
mm_144936.1	chr18	37736828	37737028	+	1	NA	NA	NA	-8	NM_033592	93717	Mm.247203	NM_033592	ENSMUSG00000102440	Pcdhga9	-	protocadherin gamma subfamily A, 9	protein-coding	0.030000	0.492537	
mm_141843.1	chr17	34739897	34740097	-	1	NA	NA	NA	3900	NM_009780	12268	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	0.010000	0.537313	
mm_23960.1	chr3	84952117	84952317	+	1	NA	NA	NA	6	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.020000	0.532338	
mm_108878.1	chr12	99884415	99884615	+	1	NA	NA	NA	0	NM_028354	104884	Mm.312323	NM_028354	ENSMUSG00000021177	Tdp1	2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1	tyrosyl-DNA phosphodiesterase 1	protein-coding	0.165000	0.786070	
mm_163237.1	chr11	104231434	104231634	+	1	NA	NA	NA	98	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.110000	0.676617	
mm_73620.1	chr8	110266853	110267053	+	1	NA	NA	NA	-24	NM_172916	244653	Mm.444803	NM_172916	ENSMUSG00000059854	Hydin	1700034M11Rik|4930545D19Rik|4932703P14|A830061H17|AC069308.21gm4|hy-3|hy3|hyrh	HYDIN, axonemal central pair apparatus protein	protein-coding	0.045000	0.507463	
mm_127612.1	chr15	102459992	102460192	+	1	NA	NA	NA	922	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.015000	0.537313	
mm_45082.1	chr5	43981705	43981905	-	1	NA	NA	NA	-6	NM_001271616	14181	Mm.46053	NM_008009	ENSMUSG00000048373	Fgfbp1	FGF-BP|FGF-BP1|FGFBP-1	fibroblast growth factor binding protein 1	protein-coding	0.010000	0.532338	
mm_152661.1	chr19	12796461	12796661	-	1	NA	NA	NA	-438	NM_053009	109910	Mm.290924	NM_053009	ENSMUSG00000024695	Zfp91	9130014I08Rik|A530054C17Rik|AL024263|AW545902|Pzf|Zfp-91	zinc finger protein 91	protein-coding	0.045000	0.467662	
mm_66111.1	chr7	31041718	31041918	-	1	NA	NA	NA	21	NM_001111073	18301	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	0.045000	0.656716	
mm_149848.1	chr19	25052483	25052683	+	1	NA	NA	NA	53054	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.030000	0.417910	
mm_171746.1	chr4	98726718	98726918	+	1	NA	NA	NA	64	NM_001081202	381591	Mm.34340	NM_001081202	ENSMUSG00000087166	L1td1	AA546746|AB211064|D76865|ECAT11	LINE-1 type transposase domain containing 1	protein-coding	0.040000	0.631841	
mm_103408.1	chr11	75449805	75450005	-	1	NA	NA	NA	4812	NM_138950	192652	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0.025000	0.616915	
mm_45233.1	chr5	53594206	53594406	-	1	NA	NA	NA	3820	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.010000	0.452736	
mm_72400.1	chr8	81769264	81769464	+	1	NA	NA	NA	426802	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.000000	0.492537	
mm_129875.1	chr15	83432704	83432904	-	1	NA	NA	NA	46	NM_011862	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.020000	0.522388	
mm_142472.1	chr17	45659224	45659424	-	1	NA	NA	NA	-15	NM_001013767	268958	Mm.426026	NM_001013767	ENSMUSG00000058626	Capn11	-	calpain 11	protein-coding	0.015000	0.577114	
mm_130972.1	chr15	103333273	103333473	-	1	NA	NA	NA	6713	NM_013866	29813	Mm.14099	NM_013866	ENSMUSG00000000552	Zfp385a	Hzf|Zfp385|Znf385a	zinc finger protein 385A	protein-coding	0.005000	0.557214	28(GTGTATATATGG,-,0.00)
mm_7270.1	chr1	96872027	96872227	-	1	NA	NA	NA	44	NM_172658	227394	Mm.11662	NM_172658	ENSMUSG00000040693	Slco4c1	9530051F04|C330017E21Rik|OATP-H|OATP-M1|OATP4C1|OATPX|PRO2176|SLC21A20|oatp-R	solute carrier organic anion transporter family, member 4C1	protein-coding	0.060000	0.611940	
mm_67042.1	chr7	67255115	67255315	-	1	NA	NA	NA	32599	NM_001191051	75099	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.000000	0.313433	-54(CTTTAAATAGTC,+,0.00)
mm_157189.1	chrX	12053527	12053727	-	1	NA	NA	NA	26926	NM_175045	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.005000	0.512438	-64(TGCCATAAGAGG,-,0.00)
mm_157656.1	chrX	57338448	57338648	-	1	NA	NA	NA	181	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	0.035000	0.502488	-51(GCTCATAAAAGG,-,0.00)
mm_99386.1	chr11	102097149	102097349	+	1	NA	NA	NA	4051	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.065000	0.661692	
mm_15140.1	chr2	153974703	153974903	+	1	NA	NA	NA	-142	NM_001080811	545477	Mm.379973	NM_001080811	ENSMUSG00000078998	Bpifa6	EG545477|Gm5840|Splunc6	BPI fold containing family A, member 6	protein-coding	0.010000	0.537313	
mm_111858.1	chr12	107956553	107956753	-	1	NA	NA	NA	46761	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.005000	0.402985	
mm_74413.1	chr8	3624877	3625077	-	1	NA	NA	NA	72	NM_001129804	18545	Mm.440882	NM_008790	ENSMUSG00000004630	Pcp2	L7|Pcp-2	Purkinje cell protein 2 (L7)	protein-coding	0.020000	0.557214	
mm_31089.1	chr4	41634775	41634975	+	1	NA	NA	NA	5427	NM_027147	69638	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.005000	0.477612	
mm_92799.1	chr10	81358259	81358459	-	1	NA	NA	NA	789	NM_028657	73822	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1	major facilitator superfamily domain containing 12	protein-coding	0.010000	0.592040	
mm_26204.1	chr3	138548899	138549099	+	1	NA	NA	NA	21731	NM_001313980	13684	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.000000	0.258706	
mm_39091.1	chr4	154667598	154667798	-	1	NA	NA	NA	169	NM_028513	73353	Mm.30958	NM_028513	ENSMUSG00000051276	Actrt2	1700052K15Rik|Arp-T2|Arpm2	actin-related protein T2	protein-coding	0.015000	0.497512	
mm_45340.1	chr5	65763869	65764069	-	1	NA	NA	NA	448	NM_001024917	333789	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.130000	0.776119	
mm_70908.1	chr8	25673885	25674085	+	1	NA	NA	NA	33408	NM_001081269	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.005000	0.318408	
mm_147262.1	chr18	38866912	38867112	-	1	NA	NA	NA	-25444	NM_001033789	545253	Mm.244585	NM_001033789	ENSMUSG00000036452	Gm5820	EG545253	predicted gene 5820	protein-coding	0.015000	0.482587	
mm_107653.1	chr12	52699254	52699454	+	1	NA	NA	NA	-29	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.010000	0.472637	
mm_8198.1	chr1	138121393	138121593	-	1	NA	NA	NA	53633	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.442786	
mm_67902.1	chr7	99691529	99691729	-	1	NA	NA	NA	4180	NM_001252531	101488	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0.005000	0.592040	
mm_170455.1	chr18	87044876	87045076	-	1	NA	NA	NA	332911	NM_172633	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.050000	0.512438	
mm_134472.1	chr16	18586865	18587065	-	1	NA	NA	NA	4	NM_011532	21380	Mm.295194	NM_011532	ENSMUSG00000009097	Tbx1	-	T-box 1	protein-coding	0.165000	0.776119	
mm_145402.1	chr18	57373783	57373983	+	1	NA	NA	NA	19150	NM_028447	73137	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	0.020000	0.472637	47(CGGTTTTAATGG,-,0.00),49(GTTTTAATGGCG,+,0.00)
mm_98956.1	chr11	98493010	98493210	+	1	NA	NA	NA	46276	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.015000	0.432836	
mm_76095.1	chr8	79864009	79864209	-	1	NA	NA	NA	152289	NM_026904	68999	Mm.257445	NM_026904	ENSMUSG00000036977	Anapc10	1500026N15Rik|A830003M23Rik|APC10	anaphase promoting complex subunit 10	protein-coding	0.010000	0.472637	
mm_53444.1	chr6	134414329	134414529	+	1	NA	NA	NA	18100	NM_025778	66813	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.020000	0.507463	-76(GCTTTTCGAGTC,+,0.00)
mm_3081.1	chr1	134405613	134405813	+	1	NA	NA	NA	-277	NM_028057	72017	Mm.280230	NM_028057	ENSMUSG00000026456	Cyb5r1	1500005G05Rik|B5R.1|C80155|Nqo3a2	cytochrome b5 reductase 1	protein-coding	0.020000	0.432836	
mm_52133.1	chr6	97945083	97945283	+	1	NA	NA	NA	15366	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.015000	0.422886	-14(GCATTTATGGGT,+,0.00)
mm_154487.1	chrM	4954	5154	-	1	NA	NA	NA	NA	NA									0.015000	0.358209	
mm_161526.1	chr15	100936194	100936394	+	1	NA	NA	NA	23	NM_011323	20273	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	0.065000	0.577114	-73(CCTTTTAGAGCG,+,0.00)
mm_160408.1	chr8	71922762	71922962	+	1	NA	NA	NA	37	NM_133358	170938	Mm.480419	NM_133358	ENSMUSG00000066880	Zfp617	Zfps11-6	zinc finger protein 617	protein-coding	0.065000	0.646766	
mm_35237.1	chr4	19877099	19877299	-	1	NA	NA	NA	45367	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.000000	0.288557	
mm_104137.1	chr11	86993539	86993739	-	1	NA	NA	NA	123	NM_001005341	77864	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee-like 2 (Drosophila)	protein-coding	0.115000	0.701493	-56(GGCTTTAAGAGC,-,0.00),-55(GCTTTAAGAGCG,+,0.00)
mm_27740.1	chr3	69093714	69093914	-	1	NA	NA	NA	33278	NM_008467	16649	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	0.010000	0.303483	
mm_47500.1	chr5	124034486	124034686	-	1	NA	NA	NA	-2326	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.035000	0.492537	
mm_85053.1	chr9	90114632	90114832	-	1	NA	NA	NA	88	NM_001039147	21761	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.120000	0.686567	
mm_143008.1	chr17	56440124	56440324	-	1	NA	NA	NA	-21315	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0.025000	0.572139	
mm_91626.1	chr10	41809537	41809737	-	1	NA	NA	NA	26	NM_001243075	103268	Mm.338605	NM_026643	ENSMUSG00000019813	Cep57l1	2410017P07Rik|4930484D11Rik|AI607327|cep57R	centrosomal protein 57-like 1	protein-coding	0.065000	0.537313	
mm_109753.1	chr12	117688734	117688934	+	1	NA	NA	NA	-155027	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.035000	0.582090	75(GCCTTTAGGGGA,+,0.00)
mm_14629.1	chr2	136781098	136781298	+	1	NA	NA	NA	67748	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.005000	0.467662	
mm_104355.1	chr11	94301479	94301679	-	1	NA	NA	NA	20332	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.005000	0.353234	-10(CTTTTTATAGGC,+,0.00)
mm_89068.1	chr10	82954462	82954662	+	1	NA	NA	NA	-30935	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.100000	0.726368	
mm_91790.1	chr10	53349721	53349921	-	1	NA	NA	NA	12135	NM_001141927	18821	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0.005000	0.502488	
mm_129225.1	chr15	76612608	76612808	-	1	NA	NA	NA	4144	NM_028064	72027	Mm.276829	NM_028064	ENSMUSG00000063354	Slc39a4	1600025H15Rik|AU041686|AWMS2|ZIP4	solute carrier family 39 (zinc transporter), member 4	protein-coding	0.035000	0.562189	
mm_26514.1	chr3	145891901	145892101	+	1	NA	NA	NA	-32261	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.030000	0.477612	16(GCCCCTAAAAAC,-,0.00)
mm_59819.1	chr7	29238259	29238459	+	1	NA	NA	NA	36	NM_029887	77254	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	0.110000	0.646766	
mm_89439.1	chr10	91170680	91170880	+	1	NA	NA	NA	-230	NM_001283048	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.115000	0.661692	
mm_30040.1	chr3	135691860	135692060	-	1	NA	NA	NA	-413	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.045000	0.492537	
mm_122755.1	chr14	54213626	54213826	-	1	NA	NA	NA	40203	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.512438	
mm_5355.1	chr1	25694027	25694227	-	1	NA	NA	NA	135580	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.000000	0.233831	
mm_161220.1	chr13	67451485	67451685	-	1	NA	NA	NA	39	NM_177712	238692	Mm.486478	NM_177712	ENSMUSG00000069206	Zfp874a	C330011K17Rik|Rslcan15|Zfp874	zinc finger protein 874a	protein-coding	0.030000	0.527363	
mm_165784.1	chr3	131357673	131357873	-	1	NA	NA	NA	-12850	NM_028943	74442	Mm.273360	NM_028943	ENSMUSG00000050931	Sgms2	4933405A16Rik|5133401H06Rik|AI854299	sphingomyelin synthase 2	protein-coding	0.010000	0.472637	
mm_31570.1	chr4	57594618	57594818	+	1	NA	NA	NA	26470	NM_172868	242481	Mm.331630	NM_172868	ENSMUSG00000090053	Palm2	53-H12|B130066I24|R75368|pEN70	paralemmin 2	protein-coding	0.005000	0.363184	
mm_65745.1	chr7	28544035	28544235	-	1	NA	NA	NA	3119	NM_001081115	233038	Mm.224815	NM_001081115	ENSMUSG00000047586	Nccrp1	1190020J12Rik|Gm163|NCCRP-1	non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)	protein-coding	0.040000	0.567164	
mm_116157.1	chr13	30551270	30551470	-	1	NA	NA	NA	-6054	NM_025710	66694	Mm.181933	NM_025710	ENSMUSG00000038462	Uqcrfs1	4430402G14Rik|AI875505	ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	protein-coding	0.015000	0.522388	
mm_54176.1	chr6	23655085	23655285	-	1	NA	NA	NA	-49	NM_027754	71300	Mm.443309	NM_027754	ENSMUSG00000078179	Rnf148	4933432M07Rik|Greul3	ring finger protein 148	protein-coding	0.000000	0.333333	
mm_101846.1	chr11	48817261	48817461	-	1	NA	NA	NA	30	NM_145377	211007	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0.095000	0.646766	
mm_93797.1	chr10	120895232	120895432	-	1	NA	NA	NA	3639	NM_177092	320183	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	0.015000	0.477612	
mm_109962.1	chr12	12492810	12493010	-	1	NA	NA	NA	-100435	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	0.005000	0.407960	1(AGCTTTTAAAGG,-,0.00),2(GCTTTTAAAGGC,+,0.00),2(GCTTTTAAAGGC,-,0.00),3(CTTTTAAAGGCA,+,0.00)
mm_77840.1	chr9	5299154	5299354	+	1	NA	NA	NA	737	NM_009807	12362	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.010000	0.388060	
mm_108523.1	chr12	84100666	84100866	+	1	NA	NA	NA	112	NM_172580	217700	Mm.49245	NM_172580	ENSMUSG00000043487	Acot6	4632408A20Rik|A330054B07|BE688602	acyl-CoA thioesterase 6	protein-coding	0.030000	0.477612	-98(GTTTTTATAGAA,+,0.00)
mm_36773.1	chr4	102572089	102572289	-	1	NA	NA	NA	2129	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.015000	0.477612	
mm_55504.1	chr6	69823855	69824055	-	1	NA	NA	NA	-496781	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.010000	0.388060	-82(TCTTATAAAGTC,+,0.00)
mm_34230.1	chr4	141078344	141078544	+	1	NA	NA	NA	-99	NM_025383	66147	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898	NECAP endocytosis associated 2	protein-coding	0.070000	0.611940	
mm_149335.1	chr19	10849057	10849257	+	1	NA	NA	NA	6613	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.010000	0.512438	
mm_165048.1	chr19	40637680	40637880	-	1	NA	NA	NA	-21990	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.020000	0.507463	-32(CTCTTTTAATGG,-,0.00),-30(CTTTTAATGGCC,+,0.00)
mm_148007.1	chr18	67799850	67800050	-	1	NA	NA	NA	-7	NR_045376	75286	Mm.307315	NR_045376		4930549G23Rik	-	RIKEN cDNA 4930549G23 gene	ncRNA	0.065000	0.582090	
mm_41093.1	chr5	87694491	87694691	+	1	NA	NA	NA	4834	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.507463	
mm_75055.1	chr8	33385394	33385594	-	1	NA	NA	NA	33	NM_001122822	22427	Mm.228805	NM_011721	ENSMUSG00000031583	Wrn	AI846146	Werner syndrome homolog (human)	protein-coding	0.080000	0.666667	
mm_131345.1	chr16	13468761	13468961	+	1	NA	NA	NA	2319	NR_105784	102466153		NR_105784	ENSMUSG00000099214	Mir6365	Gm27683|mmu-mir-6365	microRNA 6365	ncRNA	0.010000	0.502488	
mm_79087.1	chr9	46242518	46242718	+	1	NA	NA	NA	1774	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.025000	0.532338	
mm_124475.1	chr14	121456791	121456991	-	1	NA	NA	NA	48363	NM_053079	56643	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	0.025000	0.517413	
mm_116283.1	chr13	34993137	34993337	-	1	NA	NA	NA	907	NM_011868	23986	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0.000000	0.437811	
mm_14477.1	chr2	131505560	131505760	+	1	NA	NA	NA	13798	NM_001177838	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.000000	0.482587	
mm_139235.1	chr17	47732365	47732565	+	1	NA	NA	NA	-4572	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.045000	0.587065	
mm_43839.1	chr5	142972786	142972986	+	1	NA	NA	NA	12531	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.030000	0.631841	
mm_155750.1	chrX	96167173	96167373	+	1	NA	NA	NA	71228	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.000000	0.407960	
mm_95123.1	chr11	34083523	34083723	+	1	NA	NA	NA	36422	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.005000	0.417910	
mm_157995.1	chrX	94540214	94540414	-	1	NA	NA	NA	1760	NM_019791	94275	Mm.27578	NM_019791	ENSMUSG00000025151	Maged1	2810433C11Rik|5430405L04Rik|DXBwg1492e|Dlixin|Dlxin-1|Dlxin1|MAGE-D1|NRAGE|mFLJ00163	melanoma antigen, family D, 1	protein-coding	0.010000	0.527363	-34(GCTTTAAGGCCC,+,0.00)
mm_78526.1	chr9	34636206	34636406	+	1	NA	NA	NA	147575	NM_001190911	67703	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kin of IRRE like 3 (Drosophila)	protein-coding	0.020000	0.437811	43(CCATTTATAGGC,+,0.00)
mm_9120.1	chr1	170211682	170211882	-	1	NA	NA	NA	3611	NM_010633	16589	Mm.209150	NM_010633	ENSMUSG00000026667	Uhmk1	4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|OTTMUSG00000021542|P-CIP2	U2AF homology motif (UHM) kinase 1	protein-coding	0.025000	0.467662	
mm_108581.1	chr12	85110758	85110958	+	1	NA	NA	NA	25	NM_030225	78920	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0.125000	0.706468	
mm_139800.1	chr17	66111455	66111655	+	1	NA	NA	NA	9	NM_026833	68767	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	0.070000	0.651741	
mm_94124.1	chr10	128670465	128670665	-	1	NA	NA	NA	3353	NM_173733	211389	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	0.020000	0.507463	
mm_50079.1	chr6	41458800	41459000	+	1	NA	NA	NA	-30	NM_053243	114228	Mm.449428	NM_053243	ENSMUSG00000062751	Prss1	Try-1|Try1|Trygn16	protease, serine 1 (trypsin 1)	protein-coding	0.000000	0.547264	-4(GGGTATAAAGGC,-,0.00)
mm_126864.1	chr15	89334902	89335102	+	1	NA	NA	NA	529	NM_019977	56727	Mm.158200	NM_019977	ENSMUSG00000022613	Miox	0610009I10Rik|AI314022|Aldrl6|C85427|RSOR	myo-inositol oxygenase	protein-coding	0.015000	0.532338	77(CCTTTTCAAGCA,+,0.00)
mm_1550.1	chr1	72934812	72935012	+	1	NA	NA	NA	-60047	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.005000	0.368159	
mm_37072.1	chr4	116151289	116151489	-	1	NA	NA	NA	-42	NM_001290658	68273	Mm.196045	NM_026651	ENSMUSG00000028700	Pomgnt1	0610016I07Rik|4930467B06Rik	protein O-linked mannose beta 1,2-N-acetylglucosaminyltransferase	protein-coding	0.005000	0.507463	
mm_69231.1	chr7	127708008	127708208	-	1	NA	NA	NA	-379	NR_030428	791073		NR_030428	ENSMUSG00000076454	Mir762	Mirn762|mir-762|mmu-mir-762	microRNA 762	ncRNA	0.025000	0.597015	
mm_149047.1	chr19	8831491	8831691	+	1	NA	NA	NA	-5876	NM_001136064	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.025000	0.592040	
mm_80324.1	chr9	74976037	74976237	+	1	NA	NA	NA	26	NM_153584	235493	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	0.060000	0.636816	
mm_120726.1	chr14	73142427	73142627	+	1	NA	NA	NA	17	NM_134083	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.010000	0.447761	
mm_142697.1	chr17	47834428	47834628	-	1	NA	NA	NA	163	NM_001109973	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.085000	0.676617	
mm_39190.1	chr4	155891642	155891842	-	1	NA	NA	NA	20	NM_001033490	433813	Mm.259270	NM_001033490	ENSMUSG00000051557	Pusl1	2810021I11Rik|AI853843|D18346	pseudouridylate synthase-like 1	protein-coding	0.110000	0.701493	
mm_44493.1	chr5	23676362	23676562	-	1	NA	NA	NA	36205	NR_038090	433855	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	0.045000	0.572139	
mm_69252.1	chr7	127848860	127849060	-	1	NA	NA	NA	7152	NM_009294	20909	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.005000	0.412935	
mm_99831.1	chr11	108923182	108923382	+	1	NA	NA	NA	2933	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.050000	0.542289	
mm_8009.1	chr1	134803621	134803821	-	1	NA	NA	NA	0	NR_015606	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.005000	0.502488	
mm_158790.1	chrX	167209371	167209571	-	1	NA	NA	NA	-253	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.025000	0.482587	
mm_109452.1	chr12	111067802	111068002	+	1	NA	NA	NA	28104	NM_198023	217864	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0.020000	0.512438	
mm_63944.1	chr7	139834180	139834380	+	1	NA	NA	NA	106	NM_177469	52389	Mm.39863	NM_177469	ENSMUSG00000025475	Adgra1	2900059M17Rik|D7Ertd680e|Gpr123	adhesion G protein-coupled receptor A1	protein-coding	0.065000	0.666667	
mm_135373.1	chr16	44086473	44086673	-	1	NA	NA	NA	52446	NM_007508	11964	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.005000	0.462687	
mm_119410.1	chr14	44988808	44989008	+	1	NA	NA	NA	797	NM_008964	19217	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.020000	0.552239	
mm_127851.1	chr15	7398611	7398811	-	1	NA	NA	NA	-316	NM_001289498	268780	Mm.203208	NM_178748	ENSMUSG00000042961	Egflam	5930412K08|AU040377	EGF-like, fibronectin type III and laminin G domains	protein-coding	0.010000	0.507463	
mm_95948.1	chr11	58390012	58390212	+	1	NA	NA	NA	9466	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.010000	0.487562	
mm_157961.1	chrX	88115847	88116047	-	1	NA	NA	NA	-324	NM_001160403	331461	Mm.121680	NM_001160403	ENSMUSG00000052372	Il1rapl1	6330532G10Rik|C030039N24|IL1R8|IL1RAPL|MRX34|OPHN4|TIGIRR-2	interleukin 1 receptor accessory protein-like 1	protein-coding	0.020000	0.407960	
mm_19679.1	chr2	103454511	103454711	-	1	NA	NA	NA	30542	NM_009804	12359	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0.035000	0.447761	
mm_38886.1	chr4	149737906	149738106	-	1	NA	NA	NA	62	NM_001284270	230917	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	0.155000	0.756219	
mm_115135.1	chr13	104620102	104620302	+	1	NA	NA	NA	196751	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.005000	0.393035	-34(GTGTATTTAAAG,-,0.00),31(GCTTTTAAATAA,+,0.00)
mm_97166.1	chr11	75509874	75510074	+	1	NA	NA	NA	-120	NM_001029938	280408	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	0.015000	0.562189	78(CCCCTTATGGCC,+,0.00)
mm_126920.1	chr15	91641859	91642059	+	1	NA	NA	NA	-31265	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.005000	0.497512	
mm_35355.1	chr4	32291364	32291564	-	1	NA	NA	NA	-125971	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.010000	0.472637	
mm_64261.1	chr7	141746537	141746737	+	1	NA	NA	NA	-42374	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.005000	0.502488	
mm_83902.1	chr9	56160922	56161122	-	1	NA	NA	NA	48	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.120000	0.721393	
mm_68556.1	chr7	114416532	114416732	-	1	NA	NA	NA	1378	NM_011055	18576	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0.060000	0.577114	
mm_153426.1	chr19	40821360	40821560	-	1	NA	NA	NA	-9819	NM_172839	240665	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.010000	0.542289	
mm_147263.1	chr18	38866966	38867166	-	1	NA	NA	NA	-25390	NM_001033789	545253	Mm.244585	NM_001033789	ENSMUSG00000036452	Gm5820	EG545253	predicted gene 5820	protein-coding	0.020000	0.437811	
mm_24732.1	chr3	95282993	95283193	+	1	NA	NA	NA	158	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.055000	0.621891	
mm_171582.1	chr4	147492391	147492591	+	1	NA	NA	NA	-60786	NM_001014397	433804	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154|OTTMUSG00000010673	zinc finger protein 985	protein-coding	0.025000	0.547264	
mm_52809.1	chr6	121342963	121343163	+	1	NA	NA	NA	-13	NM_001347433	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.025000	0.611940	
mm_105861.1	chr11	113797374	113797574	-	1	NA	NA	NA	-45659	NM_001163346	56699	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.020000	0.542289	-35(GGGTATAAAGAG,-,0.00)
mm_33295.1	chr4	128976080	128976280	+	1	NA	NA	NA	-13725	NM_001301841	242669	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.015000	0.497512	
mm_172436.1	chr7	29799625	29799825	-	1	NA	NA	NA	14935	NM_013705	22693	Mm.292690	NM_013705	ENSMUSG00000047473	Zfp30	2610306P15Rik|Zfp-30	zinc finger protein 30	protein-coding	0.030000	0.537313	
mm_109267.1	chr12	109545317	109545517	+	1	NA	NA	NA	19	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.015000	0.437811	
mm_153635.1	chr19	44069291	44069491	-	1	NA	NA	NA	295	NM_145502	226144	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	0.060000	0.621891	
mm_163658.1	chr13	74533436	74533636	+	1	NA	NA	NA	-39586	NM_146231	235956	Mm.296909	NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.005000	0.542289	
mm_26342.1	chr3	142547168	142547368	+	1	NA	NA	NA	-12784	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.015000	0.527363	
mm_52268.1	chr6	108472975	108473175	+	1	NA	NA	NA	-16668	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.010000	0.467662	
mm_139620.1	chr17	57362558	57362758	+	1	NA	NA	NA	3972	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.398010	
mm_152994.1	chr19	29806442	29806642	-	1	NA	NA	NA	-533	NM_172836	240613	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	ENSMUSG00000048936|Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	0.085000	0.686567	
mm_116432.1	chr13	42052699	42052899	-	1	NA	NA	NA	778	NM_007772	110521	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.065000	0.666667	
mm_6743.1	chr1	83277107	83277307	-	1	NA	NA	NA	117445	NM_027725	71227	Mm.256482	NM_027725	ENSMUSG00000053161	Daw1	4930563E19Rik|4933429D11Rik|Wdr69|b2b1116Clo|b2b1584Clo	dynein assembly factor with WDR repeat domains 1	protein-coding	0.040000	0.487562	
mm_62004.1	chr7	91253180	91253380	+	1	NA	NA	NA	162494	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.203980	
mm_26371.1	chr3	142560525	142560725	+	1	NA	NA	NA	129	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.015000	0.492537	
mm_91772.1	chr10	51757064	51757264	-	1	NA	NA	NA	30	NR_045158	71090	Mm.72588	NM_027670	ENSMUSG00000062224	4933411G06Rik	-	Sumo1 pseudogene	pseudo	0.025000	0.492537	
mm_108271.1	chr12	78860939	78861139	+	1	NA	NA	NA	599	NM_023721	73834	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	0.035000	0.537313	
mm_69874.1	chr7	141539715	141539915	-	1	NA	NA	NA	42	NM_026522	68038	Mm.245355	NM_026522	ENSMUSG00000025512	Chid1	3110023E09Rik|AI841869	chitinase domain containing 1	protein-coding	0.085000	0.626866	
mm_31125.1	chr4	43045929	43046129	+	1	NA	NA	NA	191	NR_045567	230088	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0.055000	0.621891	
mm_158050.1	chrX	99470612	99470812	-	1	NA	NA	NA	23	NM_001083110	18744	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger 1, E3 ubiquitin protein ligase	protein-coding	0.105000	0.696517	
mm_71834.1	chr8	68901082	68901282	+	1	NA	NA	NA	20627	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.020000	0.472637	
mm_31986.1	chr4	89182193	89182393	+	1	NA	NA	NA	44923	NM_024433	66902	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	0.000000	0.313433	
mm_87070.1	chr10	29144124	29144324	+	1	NA	NA	NA	228	NM_026138	67412	Mm.390264	NM_026138	ENSMUSG00000038916	Soga3	6330407J23Rik	SOGA family member 3	protein-coding	0.050000	0.562189	
mm_28569.1	chr3	93444954	93445154	-	1	NA	NA	NA	2724	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.040000	0.611940	
mm_64059.1	chr7	140847746	140847946	+	1	NA	NA	NA	-70	NM_027019	69287	Mm.56404	NM_027019	ENSMUSG00000025482	Odf3	1700011O04Rik|SHIPPO1	outer dense fiber of sperm tails 3	protein-coding	0.005000	0.577114	-8(TCCTTTTTAGGG,-,0.00),-6(CTTTTTAGGGAG,+,0.00)
mm_152273.1	chr19	8819190	8819390	-	1	NA	NA	NA	4	NM_027412	70387	Mm.261082	NM_027412	ENSMUSG00000071660	Ttc9c	2210019E14Rik|6330408J23Rik	tetratricopeptide repeat domain 9C	protein-coding	0.050000	0.562189	
mm_119121.1	chr14	31130958	31131158	+	1	NA	NA	NA	-2128	NM_001308464	66487	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0.145000	0.800995	
mm_73931.1	chr8	119941941	119942141	+	1	NA	NA	NA	31681	NM_001310630	22224	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	0.005000	0.522388	
mm_32688.1	chr4	115847812	115848012	+	1	NA	NA	NA	8714	NM_001285487	17346	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0.020000	0.537313	
mm_54774.1	chr6	41538590	41538790	-	1	NA	NA	NA	16914	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.358209	
mm_74986.1	chr8	27142244	27142444	-	1	NA	NA	NA	-566	NR_045840	71082	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.005000	0.527363	
mm_134023.1	chr16	4939516	4939716	-	1	NA	NA	NA	-31	NR_037666	100503704	Mm.480572	NR_037666	ENSMUSG00000097397	Gm16861	-	predicted gene, 16861	ncRNA	0.035000	0.611940	
mm_111728.1	chr12	103767938	103768138	-	1	NA	NA	NA	5595	NM_009246	20703	Mm.439695	NM_009246	ENSMUSG00000071177	Serpina1d	AI118301|Dom4|PI4|Spi1-4	serine (or cysteine) peptidase inhibitor, clade A, member 1D	protein-coding	0.000000	0.522388	
mm_132181.1	chr16	32400708	32400908	+	1	NA	NA	NA	302	NM_001160402	277203	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0.035000	0.582090	
mm_120980.1	chr14	78724765	78724965	+	1	NA	NA	NA	224	NM_001081336	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.075000	0.686567	
mm_89812.1	chr10	103367692	103367892	+	1	NA	NA	NA	-16	NM_001252330	103098	Mm.458408	NM_175328	ENSMUSG00000019894	Slc6a15	AA536730|AI326450|AI326451|v7-3	solute carrier family 6 (neurotransmitter transporter), member 15	protein-coding	0.055000	0.587065	
mm_9686.1	chr1	178334460	178334660	-	1	NA	NA	NA	3224	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.000000	0.383085	10(AACCTTAAAAGG,-,0.00),12(CCTTAAAAGGCT,+,0.00)
mm_5688.1	chr1	43183723	43183923	-	1	NA	NA	NA	12938	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.005000	0.467662	75(TCCTTTATAAGA,-,0.00)
mm_35794.1	chr4	46536013	46536213	-	1	NA	NA	NA	28	NM_029077	74735	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	0.100000	0.686567	
mm_86463.1	chr10	4387429	4387629	+	1	NA	NA	NA	579	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.145000	0.786070	
mm_140445.1	chr17	88580301	88580501	+	1	NA	NA	NA	-46154	NM_029858	77057	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.040000	0.547264	
mm_58514.1	chr7	4130717	4130917	+	1	NA	NA	NA	6109	NR_033548	100037396	Mm.447887	NR_033548	ENSMUSG00000085886	D030047H15Rik	Gm15924|OTTMUSG00000027889	RIKEN cDNA D030047H15 gene	ncRNA	0.020000	0.592040	
mm_6565.1	chr1	75142580	75142780	-	1	NA	NA	NA	-106	NM_170755	227298	Mm.273062	NM_170755	ENSMUSG00000049339	Fam134a	-	family with sequence similarity 134, member A	protein-coding	0.125000	0.671642	
mm_15319.1	chr2	155747044	155747244	+	1	NA	NA	NA	-4073	NM_011171	19124	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	0.010000	0.497512	
mm_91544.1	chr10	39692218	39692418	-	1	NA	NA	NA	39689	NR_038037	327744	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	0.000000	0.308458	
mm_165294.1	chr2	91096803	91097003	+	1	NA	NA	NA	225	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.045000	0.641791	
mm_46334.1	chr5	101665151	101665351	-	1	NA	NA	NA	-540	NM_144955	18096	Mm.193072	NM_144955	ENSMUSG00000035187	Nkx6-1	NKX6A|Nkx6.1	NK6 homeobox 1	protein-coding	0.060000	0.621891	
mm_6850.1	chr1	84247663	84247863	-	1	NA	NA	NA	-28802	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.442786	
mm_80467.1	chr9	78113253	78113453	+	1	NA	NA	NA	115	NM_019987	56542	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	0.120000	0.706468	
mm_152645.1	chr19	12528109	12528309	-	1	NA	NA	NA	-26213	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.010000	0.437811	
mm_15940.1	chr2	165810143	165810343	+	1	NA	NA	NA	47930	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.005000	0.522388	
mm_133231.1	chr16	76926112	76926312	+	1	NA	NA	NA	84669	NR_040573	76601	Mm.396217	NR_040573	ENSMUSG00000100857	1700041M19Rik	-	RIKEN cDNA 1700041M19 gene	ncRNA	0.020000	0.437811	-33(CACCCTAAAAAG,-,0.00),-31(CCCTAAAAAGAG,+,0.00)
mm_56157.1	chr6	87850933	87851133	-	1	NA	NA	NA	73	NM_001109746	12785	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	0.105000	0.656716	
mm_124925.1	chr15	12146079	12146279	+	1	NA	NA	NA	-25313	NR_035443	100316684		NR_035443	ENSMUSG00000084592	Mir1898	Mirn1898|mmu-mir-1898	microRNA 1898	ncRNA	0.015000	0.412935	-77(CCTTTTATAATC,+,0.00)
mm_142006.1	chr17	35200031	35200231	-	1	NA	NA	NA	1876	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.015000	0.512438	
mm_39884.1	chr5	31116475	31116675	+	1	NA	NA	NA	-37	NM_021447	58522	Mm.143796	NM_021447	ENSMUSG00000062077	Trim54	4930486E09Rik|4930566I02Rik|MURF|MURF-3|MuRF3|Rnf30	tripartite motif-containing 54	protein-coding	0.010000	0.547264	
mm_20333.1	chr2	127521267	127521467	-	1	NA	NA	NA	25	NM_001291005	56461	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0.035000	0.606965	
mm_69861.1	chr7	141437519	141437719	-	1	NA	NA	NA	255	NM_026646	68267	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0.115000	0.711443	
mm_39775.1	chr5	30020757	30020957	+	1	NA	NA	NA	7743	NM_031168	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.000000	0.368159	
mm_163203.1	chr11	97435292	97435492	+	1	NA	NA	NA	-14768	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.015000	0.447761	
mm_39855.1	chr5	30921475	30921675	+	1	NA	NA	NA	16	NM_001310524	16548	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0.095000	0.681592	
mm_112030.1	chr12	111485998	111486198	-	1	NA	NA	NA	-275	NM_001033248	212539	Mm.81916	NM_001033248	ENSMUSG00000010529	Gm266	-	predicted gene 266	protein-coding	0.030000	0.616915	
mm_40944.1	chr5	76822286	76822486	+	1	NA	NA	NA	-18213	NM_001163793	320827	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.045000	0.567164	
mm_131021.1	chr15	103564979	103565179	-	1	NA	NA	NA	2	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.000000	0.492537	
mm_48538.1	chr5	142904664	142904864	-	1	NA	NA	NA	1990	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.020000	0.487562	
mm_116556.1	chr13	46727561	46727761	-	1	NA	NA	NA	188	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.155000	0.736318	
mm_80253.1	chr9	72749462	72749662	+	1	NA	NA	NA	-57712	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.030000	0.373134	
mm_91950.1	chr10	61098783	61098983	-	1	NA	NA	NA	9552	NM_025273	13180	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.010000	0.407960	
mm_45646.1	chr5	76971385	76971585	-	1	NA	NA	NA	-3216	NM_025691	66661	Mm.296976	NM_025691	ENSMUSG00000036323	Srp72	5730576P14Rik|72kDa|AI132477|BC019196|C77589	signal recognition particle 72	protein-coding	0.015000	0.422886	5(CCCTCTTAAAGG,-,0.00),6(CCTCTTAAAGGC,+,0.00)
mm_67903.1	chr7	99695466	99695666	-	1	NA	NA	NA	243	NM_001252531	101488	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0.015000	0.547264	
mm_72396.1	chr8	81767983	81768183	+	1	NA	NA	NA	425521	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.015000	0.447761	
mm_12309.1	chr2	69113707	69113907	+	1	NA	NA	NA	-21993	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.010000	0.313433	
mm_59002.1	chr7	19178909	19179109	+	1	NA	NA	NA	-2161	NM_001162996	72205	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0.040000	0.592040	
mm_90764.1	chr10	5593421	5593621	-	1	NA	NA	NA	-207	NM_026793	68632	Mm.338242	NM_026793	ENSMUSG00000046916	Myct1	1110020B04Rik|AI225941|AI642973|Mtmc1	myc target 1	protein-coding	0.005000	0.487562	
mm_12675.1	chr2	75808158	75808358	+	1	NA	NA	NA	-23919	NM_172666	228061	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.045000	0.517413	
mm_74176.1	chr8	123452350	123452550	+	1	NA	NA	NA	9191	NM_001281803	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.010000	0.492537	
mm_115728.1	chr13	17694658	17694858	-	1	NA	NA	NA	7	NM_138654	192136	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	0.085000	0.766169	
mm_155519.1	chrX	74254783	74254983	+	1	NA	NA	NA	196	NM_007927	13726	Mm.18892	NM_007927	ENSMUSG00000001964	Emd	AW550900|Sta	emerin	protein-coding	0.100000	0.641791	
mm_97457.1	chr11	78244433	78244633	+	1	NA	NA	NA	1170	NM_009297	20926	Mm.20755	NM_009297	ENSMUSG00000002052	Supt6	5131400N11Rik|AI132449|SPT6|Supt6h|mKIAA0162	suppressor of Ty 6	protein-coding	0.010000	0.522388	
mm_65453.1	chr7	25412808	25413008	-	1	NA	NA	NA	-22	NM_153576	232983	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0.010000	0.457711	
mm_158110.1	chrX	102156922	102157122	-	1	NA	NA	NA	69	NM_146235	236930	Mm.31911	NM_146235	ENSMUSG00000051220	Ercc6l	BC004701|D330021P09Rik	excision repair cross-complementing rodent repair deficiency complementation group 6 like	protein-coding	0.065000	0.616915	
mm_86670.1	chr10	18055505	18055705	+	1	NA	NA	NA	-335	NM_009048	19707	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0.115000	0.716418	
mm_39749.1	chr5	29587467	29587667	+	1	NA	NA	NA	18325	NM_133907	100763	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	0.000000	0.308458	-3(TTGCTTATAAGG,-,0.00),-1(GCTTATAAGGTT,+,0.00),53(CTCCATATAAGG,-,0.00),55(CCATATAAGGAG,+,0.00)
mm_108104.1	chr12	75307971	75308171	+	1	NA	NA	NA	-242	NM_023275	80837	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	0.025000	0.542289	
mm_44855.1	chr5	34243257	34243457	-	1	NA	NA	NA	44967	NM_001015039	231125	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.000000	0.577114	
mm_84818.1	chr9	77544698	77544898	-	1	NA	NA	NA	54	NM_001146048	214345	Mm.28534	NM_172528	ENSMUSG00000032352	Lrrc1	A430093J20Rik|AU016091|D030059I21|mKIAA4018	leucine rich repeat containing 1	protein-coding	0.165000	0.756219	
mm_63066.1	chr7	122132478	122132678	+	1	NA	NA	NA	368	NM_001289844	233826	Mm.38348	NM_172744	ENSMUSG00000044702	Palb2	BC066140	partner and localizer of BRCA2	protein-coding	0.040000	0.502488	
mm_24571.1	chr3	93444445	93444645	+	1	NA	NA	NA	2215	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.090000	0.711443	
mm_294.1	chr1	23271660	23271860	+	1	NA	NA	NA	-509	NR_029533	387225		NR_029533	ENSMUSG00000065405	Mir30a	Mirn30a|mir-30a|mmu-mir-30a	microRNA 30a	ncRNA	0.010000	0.457711	
mm_112235.1	chr12	113482256	113482456	-	1	NA	NA	NA	-7209	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.522388	
mm_169366.1	chr14	32202329	32202529	+	1	NA	NA	NA	458	NM_011960	26430	Mm.15962	NM_011960	ENSMUSG00000021911	Parg	AI413217	poly (ADP-ribose) glycohydrolase	protein-coding	0.075000	0.616915	
mm_172312.1	chr7	105953856	105954056	-	1	NA	NA	NA	11	NM_001243040	100042856	Mm.425473	NM_001243039	ENSMUSG00000078606	Gm4070	VLIG-1	predicted gene 4070	protein-coding	0.000000	0.517413	-28(CCTCATAGAGCC,+,0.00)
mm_56245.1	chr6	90736032	90736232	-	1	NA	NA	NA	-19603	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.040000	0.616915	
mm_97420.1	chr11	78032228	78032428	+	1	NA	NA	NA	15	NM_183286	70451	Mm.390342	NM_183286	ENSMUSG00000020834	Dhrs13	2610209N15Rik	dehydrogenase/reductase (SDR family) member 13	protein-coding	0.135000	0.771144	
mm_132232.1	chr16	32736195	32736395	+	1	NA	NA	NA	409	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.010000	0.601990	
mm_22636.1	chr3	14863337	14863537	+	1	NA	NA	NA	-101	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.030000	0.547264	41(CTATATAAAAGA,-,0.00)
mm_90615.1	chr10	128377021	128377221	+	1	NA	NA	NA	-3	NM_172790	237615	Mm.440177	NM_172790	ENSMUSG00000014498	Ankrd52	6430544C07|G431002C21Rik	ankyrin repeat domain 52	protein-coding	0.165000	0.845771	
mm_68991.1	chr7	126624955	126625155	-	1	NA	NA	NA	415	NM_019738	56312	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	0.040000	0.557214	-33(CCATTTATATGC,+,0.00)
mm_148797.1	chr19	6184269	6184469	+	1	NA	NA	NA	-41	NM_001165919	622554	Mm.159757	NM_001165919	ENSMUSG00000024786	Majin	1700123I01Rik	membrane anchored junction protein	protein-coding	0.070000	0.537313	
mm_48981.1	chr6	4755303	4755503	+	1	NA	NA	NA	8097	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.055000	0.587065	
mm_64571.1	chr7	144900353	144900553	+	1	NA	NA	NA	3921	NM_008003	14170	Mm.3904	NM_008003	ENSMUSG00000031073	Fgf15	FGF19	fibroblast growth factor 15	protein-coding	0.010000	0.482587	
mm_147871.1	chr18	64488861	64489061	-	1	NA	NA	NA	105	NM_007998	14151	Mm.1070	NM_007998	ENSMUSG00000024588	Fech	AI894116|Fcl|fch	ferrochelatase	protein-coding	0.150000	0.726368	
mm_34220.1	chr4	140983458	140983658	+	1	NA	NA	NA	-3315	NM_029097	74772	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.025000	0.621891	
mm_5842.1	chr1	52953102	52953302	-	1	NA	NA	NA	-362	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.045000	0.631841	
mm_70477.1	chr8	12395429	12395629	+	1	NA	NA	NA	10	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.105000	0.711443	
mm_139231.1	chr17	47731117	47731317	+	1	NA	NA	NA	4375	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.020000	0.582090	
mm_135468.1	chr16	45844242	45844442	-	1	NA	NA	NA	36	NM_153412	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology like domain, family B, member 2	protein-coding	0.105000	0.761194	
mm_67101.1	chr7	69909486	69909686	-	1	NA	NA	NA	413492	NR_045940	73796	Mm.410832	NR_045940	ENSMUSG00000108885	4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA	0.005000	0.487562	
mm_27395.1	chr3	51210087	51210287	-	1	NA	NA	NA	-14260	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.005000	0.562189	
mm_126739.1	chr15	85671713	85671913	+	1	NA	NA	NA	-31960	NR_110483	102800312	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0.125000	0.701493	
mm_145527.1	chr18	60638461	60638661	+	1	NA	NA	NA	-14256	NM_177340	104027	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	0.005000	0.502488	
mm_23776.1	chr3	76637443	76637643	+	1	NA	NA	NA	561960	NM_001253719	213262	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	0.005000	0.233831	
mm_102888.1	chr11	69411647	69411847	-	1	NA	NA	NA	1928	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.080000	0.701493	
mm_125689.1	chr15	66807417	66807617	+	1	NA	NA	NA	24312	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.005000	0.492537	
mm_127367.1	chr15	100747779	100747979	+	1	NA	NA	NA	-13868	NM_021530	59033	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0.020000	0.572139	
mm_65777.1	chr7	28766337	28766537	-	1	NA	NA	NA	207	NM_001306222	18036	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	0.080000	0.671642	-100(GGGTATATGAGG,-,0.00)
mm_111865.1	chr12	107985193	107985393	-	1	NA	NA	NA	18121	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.000000	0.412935	
mm_107575.1	chr12	44438958	44439158	+	1	NA	NA	NA	110173	NM_001146031	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.015000	0.497512	
mm_159943.1	chr6	83711055	83711255	+	1	NA	NA	NA	-109	NM_011912	24113	Mm.307165	NM_011912	ENSMUSG00000034777	Vax2	Dres93	ventral anterior homeobox 2	protein-coding	0.055000	0.666667	
mm_139170.1	chr17	47558319	47558519	+	1	NA	NA	NA	-35048	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.015000	0.427861	
mm_28476.1	chr3	92083040	92083240	-	1	NA	NA	NA	2	NM_008508	16939	Mm.1121	NM_008508	ENSMUSG00000043165	Lor	AI036317|S77319	loricrin	protein-coding	0.005000	0.542289	
mm_10365.1	chr2	11705649	11705849	+	1	NA	NA	NA	37	NM_001271500	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.045000	0.601990	
mm_12688.1	chr2	76028066	76028266	+	1	NA	NA	NA	-46199	NM_030188	78802	Mm.282339	NM_030188	ENSMUSG00000075271	Ttc30a1	4930506L13Rik	tetratricopeptide repeat domain 30A1	protein-coding	0.025000	0.547264	
mm_1662.1	chr1	74716173	74716373	+	1	NA	NA	NA	2738	NM_024264	104086	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0.000000	0.427861	-57(CTGTATTAAAGG,-,0.00),72(TCTTTTAGGCCC,+,0.00)
mm_125110.1	chr15	27924203	27924403	+	1	NA	NA	NA	101545	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.015000	0.383085	
mm_34600.1	chr4	150236718	150236918	+	1	NA	NA	NA	-379	NM_023119	13806	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	0.120000	0.711443	
mm_144815.1	chr18	36287973	36288173	+	1	NA	NA	NA	6911	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.030000	0.532338	
mm_42633.1	chr5	118478486	118478686	+	1	NA	NA	NA	-82133	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.015000	0.512438	
mm_112690.1	chr13	16756080	16756280	+	1	NA	NA	NA	744329	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.457711	
mm_169648.1	chr15	5266761	5266961	+	1	NA	NA	NA	-22674	NM_008965	19219	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.010000	0.472637	
mm_150669.1	chr19	42046690	42046890	+	1	NA	NA	NA	939	NM_026152	67432	Mm.24196	NM_026152	ENSMUSG00000025176	Hoga1	0610010D20Rik|Dhdpsl|Npl2	4-hydroxy-2-oxoglutarate aldolase 1	protein-coding	0.010000	0.472637	
mm_69622.1	chr7	137314163	137314363	-	1	NA	NA	NA	182	NM_001113415	13593	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.145000	0.706468	
mm_152307.1	chr19	9135519	9135719	-	1	NA	NA	NA	-53	NM_025610	66514	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	0.110000	0.706468	
mm_136400.1	chr16	93490191	93490391	-	1	NA	NA	NA	-31419	NR_040494	72264	Mm.396204	NR_040494	ENSMUSG00000099968	1700029J03Rik	-	RIKEN cDNA 1700029J03 gene	ncRNA	0.005000	0.502488	
mm_126608.1	chr15	82898927	82899127	+	1	NA	NA	NA	-53	NR_045068	100504637	Mm.440928	NR_045068	ENSMUSG00000100199	Gm20324	-	predicted gene, 20324	ncRNA	0.110000	0.751244	
mm_121658.1	chr14	12343216	12343416	-	1	NA	NA	NA	2549	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	0.000000	0.407960	
mm_79118.1	chr9	46291977	46292177	+	1	NA	NA	NA	9065	NM_146000	215051	Mm.32648	NM_146000	ENSMUSG00000032077	Bud13	AV305342|D030060M11Rik	BUD13 homolog	protein-coding	0.020000	0.522388	
mm_91861.1	chr10	59441692	59441892	-	1	NA	NA	NA	-13	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.040000	0.537313	
mm_24884.1	chr3	96104384	96104584	+	1	NA	NA	NA	-43	NM_001025613	229603	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0.150000	0.791045	
mm_60944.1	chr7	46920091	46920291	+	1	NA	NA	NA	-261	NM_021884	22088	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	0.090000	0.577114	
mm_9246.1	chr1	171345542	171345742	-	1	NA	NA	NA	3	NM_001242580	27045	Mm.12915	NM_012049	ENSMUSG00000013997	Nit1	AI255805|ESTM30|W57327	nitrilase 1	protein-coding	0.060000	0.626866	
mm_100851.1	chr11	5803617	5803817	-	1	NA	NA	NA	79	NM_018870	56012	Mm.219627	NM_018870	ENSMUSG00000020475	Pgam2	-	phosphoglycerate mutase 2	protein-coding	0.025000	0.562189	
mm_120623.1	chr14	70457396	70457596	+	1	NA	NA	NA	-21	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.060000	0.562189	
mm_121367.1	chr14	117386030	117386230	+	1	NA	NA	NA	460833	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.000000	0.452736	
mm_124465.1	chr14	121287031	121287231	-	1	NA	NA	NA	92099	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.045000	0.477612	
mm_85.1	chr1	7068264	7068464	+	1	NA	NA	NA	-20556	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.010000	0.457711	
mm_94396.1	chr11	5574011	5574211	+	1	NA	NA	NA	4427	NM_023816	76389	Mm.67300	NM_023816	ENSMUSG00000020481	Ankrd36	1700008J08Rik|1700012M14Rik|Ankrd48	ankyrin repeat domain 36	protein-coding	0.000000	0.442786	-85(CCTTTTATGGCA,+,0.00)
mm_128418.1	chr15	45114568	45114768	-	1	NA	NA	NA	266	NM_026200	67498	Mm.300079	NM_026200	ENSMUSG00000022342	Kcnv1	2700023A03Rik|vibe	potassium channel, subfamily V, member 1	protein-coding	0.080000	0.676617	
mm_83837.1	chr9	54249723	54249923	-	1	NA	NA	NA	-36663	NM_177350	235379	Mm.123549	NM_177350	ENSMUSG00000046167	Gldn	CRG-L2|Clom|Colm|Crgl2|Crlg2	gliomedin	protein-coding	0.005000	0.497512	
mm_135555.1	chr16	49855445	49855645	-	1	NA	NA	NA	-109	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.130000	0.741294	
mm_17684.1	chr2	32312263	32312463	-	1	NA	NA	NA	-5902	NR_128563	104795665		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	0.110000	0.746269	
mm_26931.1	chr3	20262465	20262665	-	1	NA	NA	NA	13168	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.015000	0.437811	
mm_62527.1	chr7	102232998	102233198	+	1	NA	NA	NA	10070	NR_111937	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.015000	0.457711	
mm_92692.1	chr10	80666872	80667072	-	1	NA	NA	NA	9321	NM_021462	17347	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.025000	0.601990	
mm_79729.1	chr9	62341810	62342010	+	1	NA	NA	NA	567	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.085000	0.626866	
mm_132732.1	chr16	43694268	43694468	+	1	NA	NA	NA	-30184	NM_001146325	100043314	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	ENSMUSG00000071552|Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0.045000	0.542289	
mm_135434.1	chr16	45382853	45383053	-	1	NA	NA	NA	26100	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.005000	0.412935	
mm_47635.1	chr5	125304205	125304405	-	1	NA	NA	NA	36789	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.050000	0.582090	
mm_152296.1	chr19	9083635	9083835	-	1	NA	NA	NA	4221	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.015000	0.477612	
mm_34301.1	chr4	141746678	141746878	+	1	NA	NA	NA	103	NM_001081408	75986	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	0.025000	0.636816	
mm_89488.1	chr10	93690996	93691196	+	1	NA	NA	NA	-7774	NR_038017	100504069	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	OTTMUSG00000027787	predicted gene 15915	ncRNA	0.000000	0.363184	-98(GCTCTAATAGCC,+,0.00)
mm_15084.1	chr2	153191701	153191901	+	1	NA	NA	NA	30500	NM_133847	99237	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.015000	0.572139	
mm_41390.1	chr5	90769500	90769700	+	1	NA	NA	NA	1082	NM_023785	57349	Mm.293614	NM_023785	ENSMUSG00000029372	Ppbp	2400003M24Rik|AI854500|CTAP3|CTAPIII|Cxcl7|LA-PF4|LDGF|MDGF|NAP-2|NAP-2-L1|Scyb7|TGB|TGB1|THBGB1|b-TG1|beta-TG	pro-platelet basic protein	protein-coding	0.010000	0.388060	
mm_78503.1	chr9	32745209	32745409	+	1	NA	NA	NA	49267	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.020000	0.452736	
mm_3654.1	chr1	153099259	153099459	+	1	NA	NA	NA	87088	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.035000	0.452736	
mm_124898.1	chr15	10485943	10486143	+	1	NA	NA	NA	5	NM_001289447	19355	Mm.38376	NM_011232	ENSMUSG00000022248	Rad1	mRAD1	RAD1 checkpoint DNA exonuclease	protein-coding	0.075000	0.592040	
mm_52518.1	chr6	115421992	115422192	+	1	NA	NA	NA	26	NM_011146	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.010000	0.417910	
mm_100878.1	chr11	5972596	5972796	-	1	NA	NA	NA	16938	NM_019661	56418	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0.010000	0.577114	
mm_159077.1	chr2	26225223	26225423	-	1	NA	NA	NA	12076	NM_153559	227638	Mm.116769	NM_153559	ENSMUSG00000036327	Qsox2	BC030934|Qscn6l1|Soxn	quiescin Q6 sulfhydryl oxidase 2	protein-coding	0.010000	0.572139	
mm_72180.1	chr8	72319588	72319788	+	1	NA	NA	NA	626	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.130000	0.781095	
mm_122544.1	chr14	47723943	47724143	-	1	NA	NA	NA	60287	NM_001347522	16709	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	0.025000	0.472637	
mm_86576.1	chr10	12955968	12956168	+	1	NA	NA	NA	8191	NM_029075	74732	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.005000	0.507463	
mm_142858.1	chr17	51813224	51813424	-	1	NA	NA	NA	-1270	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.125000	0.781095	
mm_26303.1	chr3	142510639	142510839	+	1	NA	NA	NA	13805	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.015000	0.512438	-41(CCTCTTAAATCC,+,0.00)
mm_66784.1	chr7	47008161	47008361	-	1	NA	NA	NA	153	NM_175318	101685	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.100000	0.621891	
mm_92037.1	chr10	62494677	62494877	-	1	NA	NA	NA	-7972	NM_133672	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.015000	0.368159	85(GCTTTAATGCTG,+,0.00)
mm_19885.1	chr2	114050250	114050450	-	1	NA	NA	NA	2525	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.025000	0.542289	
mm_162163.1	chrX	95166403	95166603	-	1	NA	NA	NA	36	NM_001290385	236915	Mm.44841	NM_001033329	ENSMUSG00000025656	Arhgef9	9630036L12Rik	CDC42 guanine nucleotide exchange factor (GEF) 9	protein-coding	0.055000	0.587065	
mm_170347.1	chr18	50858966	50859166	-	1	NA	NA	NA	-258832	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0.005000	0.427861	-41(GCATTTAAGGCG,+,0.00),-30(GGCTATAAATAG,-,0.00),-28(CTATAAATAGCC,+,0.00)
mm_22433.1	chr2	181688903	181689103	-	1	NA	NA	NA	2814	NM_001291205	56470	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0.000000	0.522388	55(CCCTTTAGGCCC,+,0.00)
mm_59316.1	chr7	25290991	25291191	+	1	NA	NA	NA	6864	NM_008776	18476	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	0.005000	0.592040	
mm_101996.1	chr11	51220326	51220526	-	1	NA	NA	NA	-8	NR_110444	71297	Mm.390420	NR_110444	ENSMUSG00000086646	Platr20	5133400J02Rik	pluripotency associated transcript 20	ncRNA	0.035000	0.462687	75(TAGTATAAATGG,-,0.00)
mm_163507.1	chr12	113140568	113140768	+	1	NA	NA	NA	63	NM_001347443	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.100000	0.636816	
mm_98401.1	chr11	94328003	94328203	+	1	NA	NA	NA	102	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.155000	0.840796	
mm_161212.1	chr13	63565454	63565654	-	1	NA	NA	NA	181	NM_008957	19206	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes	patched 1	protein-coding	0.160000	0.805970	
mm_165776.1	chr3	129332192	129332392	-	1	NA	NA	NA	457	NM_007934	13809	Mm.1193	NM_007934	ENSMUSG00000028024	Enpep	6030431M22Rik|APA|Bp-1/6C3|Ly-51|Ly51	glutamyl aminopeptidase	protein-coding	0.020000	0.532338	
mm_100597.1	chr11	121146053	121146253	+	1	NA	NA	NA	10	NM_028602	73679	Mm.390423	NM_028602	ENSMUSG00000039329	Tex19.1	2410081M02Rik|Tex19|Tex19a|mTex19.1	testis expressed gene 19.1	protein-coding	0.045000	0.592040	-32(CCCTTTATAAGG,+,0.00),-32(CCCTTTATAAGG,-,0.00),-30(CTTTATAAGGCC,+,0.00)
mm_62623.1	chr7	107567353	107567553	+	1	NA	NA	NA	20	NM_172907	244198	Mm.77425	NM_172907	ENSMUSG00000051041	Olfml1	6720478C22|AV321997|BC047207|MVAL564|ONT2|mONT2	olfactomedin-like 1	protein-coding	0.015000	0.562189	
mm_4845.1	chr1	186967543	186967743	+	1	NA	NA	NA	227	NM_033077	110957	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding	0.120000	0.686567	
mm_62336.1	chr7	100494794	100494994	+	1	NA	NA	NA	1536	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.005000	0.427861	
mm_172562.1	chr8	107263188	107263388	-	1	NA	NA	NA	7124	NR_039557	100628577		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.035000	0.472637	
mm_54841.1	chr6	42586375	42586575	-	1	NA	NA	NA	10897	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.368159	
mm_140909.1	chr17	24164956	24165156	-	1	NA	NA	NA	-1323	NM_172935	245847	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	0.020000	0.557214	
mm_166593.1	chr6	57485020	57485220	+	1	NA	NA	NA	50306	NM_175523	243382	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.010000	0.497512	
mm_94116.1	chr10	128626581	128626781	-	1	NA	NA	NA	-175	NM_013765	27370	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0.025000	0.373134	2(CCATTTCTAGGG,+,0.00)
mm_76336.1	chr8	84713740	84713940	-	1	NA	NA	NA	12383	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.040000	0.616915	
mm_141128.1	chr17	26201209	26201409	-	1	NA	NA	NA	41	NM_008113	14570	Mm.1383	NM_008113	ENSMUSG00000073433	Arhgdig	Gdi5|RIP2|Rho-GDI-3|Rho-GDI2	Rho GDP dissociation inhibitor (GDI) gamma	protein-coding	0.195000	0.825871	
mm_31102.1	chr4	41762243	41762443	+	1	NA	NA	NA	33	NM_010549	16157	Mm.193451	NM_010549	ENSMUSG00000073889	Il11ra1	AI314697|GP130|Il-11ra|Il11ra|Il11ra2|NR1	interleukin 11 receptor, alpha chain 1	protein-coding	0.015000	0.601990	
mm_84222.1	chr9	61925379	61925579	-	1	NA	NA	NA	-10969	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.020000	0.467662	
mm_156541.1	chrX	151169470	151169670	+	1	NA	NA	NA	-28508	NM_001271679	279561	Mm.441474	NM_001271678	ENSMUSG00000041245	Wnk3	Prkwnk3|Wnk3-ps	WNK lysine deficient protein kinase 3	protein-coding	0.135000	0.716418	
mm_9380.1	chr1	172210367	172210567	-	1	NA	NA	NA	-3663	NM_011063	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.060000	0.572139	
mm_97168.1	chr11	75510017	75510217	+	1	NA	NA	NA	23	NM_001029938	280408	Mm.41416	NM_001029938	ENSMUSG00000038195	Rilp	AI835553|Gm857	Rab interacting lysosomal protein	protein-coding	0.030000	0.572139	-65(CCCCTTATGGCC,+,0.00)
mm_172493.1	chr7	59228752	59228952	+	1	NA	NA	NA	100	NM_011668	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|mKIAA4216	ubiquitin protein ligase E3A	protein-coding	0.110000	0.646766	
mm_66275.1	chr7	37563554	37563754	-	1	NA	NA	NA	206098	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.000000	0.303483	
mm_148809.1	chr19	6276818	6277018	+	1	NA	NA	NA	22	NM_010119	13660	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.120000	0.771144	
mm_810.1	chr1	45795425	45795625	+	1	NA	NA	NA	24	NM_028599	73674	Mm.270376	NM_028599	ENSMUSG00000025995	Wdr75	1300003A18Rik|2410118I19Rik|C77608	WD repeat domain 75	protein-coding	0.100000	0.651741	
mm_36569.1	chr4	87806239	87806439	-	1	NA	NA	NA	-16	NM_029931	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.020000	0.457711	
mm_170345.1	chr1	85012000	85012200	+	1	NA	NA	NA	-77017	NM_027921	71781	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.020000	0.542289	
mm_166703.1	chr6	115759629	115759829	+	1	NA	NA	NA	-730	NM_144805	94346	Mm.29739	NM_144805	ENSMUSG00000059900	Tmem40	9030407H20Rik|AV091463|W64236	transmembrane protein 40	protein-coding	0.015000	0.557214	
mm_10260.1	chr2	9376203	9376403	+	1	NA	NA	NA	186788	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.000000	0.308458	
mm_9679.1	chr1	178332096	178332296	-	1	NA	NA	NA	5588	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.015000	0.422886	
mm_144526.1	chr18	25065583	25065783	+	1	NA	NA	NA	100282	NM_001142697	66648	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.020000	0.467662	
mm_74517.1	chr8	8745676	8745876	-	1	NA	NA	NA	-55239	NM_176849	234023	Mm.251655	NM_176849	ENSMUSG00000040459	Arglu1	9430010O03Rik|C130008N12	arginine and glutamate rich 1	protein-coding	0.020000	0.442786	
mm_102881.1	chr11	69410512	69410712	-	1	NA	NA	NA	3063	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.055000	0.557214	
mm_94352.1	chr11	4902185	4902385	+	1	NA	NA	NA	6942	NM_172438	107829	Mm.28969	NM_172438	ENSMUSG00000034274	Thoc5	1700060C24Rik|A430085L24Rik|Fmip|PK1.3|Sgk2	THO complex 5	protein-coding	0.010000	0.537313	
mm_154049.1	chr19	55096786	55096986	-	1	NA	NA	NA	2561	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.010000	0.417910	-33(GGCTTTAAATGC,-,0.00)
mm_126790.1	chr15	86325910	86326110	+	1	NA	NA	NA	111551	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.000000	0.517413	
mm_52932.1	chr6	122933681	122933881	+	1	NA	NA	NA	11933	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.010000	0.462687	
mm_131339.1	chr16	13392320	13392520	+	1	NA	NA	NA	33999	NM_153588	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.020000	0.432836	
mm_77414.1	chr8	120634266	120634466	-	1	NA	NA	NA	16	NM_197988	68918	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0.140000	0.805970	
mm_129136.1	chr15	76199722	76199922	-	1	NA	NA	NA	13	NM_201391	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.030000	0.646766	
mm_96704.1	chr11	69654942	69655142	+	1	NA	NA	NA	5	NM_009235	20670	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0.015000	0.567164	-40(GCCTTTTAGAGG,-,0.00),-39(CCTTTTAGAGGC,+,0.00)
mm_117532.1	chr13	83503438	83503638	-	1	NA	NA	NA	-496	NM_001347572	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.020000	0.402985	
mm_72891.1	chr8	90493010	90493210	+	1	NA	NA	NA	-144858	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding	0.020000	0.532338	
mm_26414.1	chr3	142609198	142609398	+	1	NA	NA	NA	-11365	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.005000	0.412935	49(CCTCTTAAAACC,+,0.00)
mm_56905.1	chr6	119196494	119196694	-	1	NA	NA	NA	-185	NM_001255999	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.015000	0.562189	
mm_30487.1	chr3	155091052	155091252	-	1	NA	NA	NA	2226	NM_029330	75540	Mm.35218	NM_029330	ENSMUSG00000053870	Fpgt	1700016E03Rik	fucose-1-phosphate guanylyltransferase	protein-coding	0.000000	0.323383	
mm_66665.1	chr7	45717804	45718004	-	1	NA	NA	NA	98	NM_203280	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.060000	0.577114	
mm_98693.1	chr11	96299115	96299315	+	1	NA	NA	NA	44	NM_008269	15414	Mm.215	NM_008269	ENSMUSG00000000690	Hoxb6	Hox-2.2	homeobox B6	protein-coding	0.090000	0.636816	
mm_104323.1	chr11	93955903	93956103	-	1	NA	NA	NA	-220	NM_001077529	18103	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	0.085000	0.691542	
mm_173024.1	chrX	103129487	103129687	+	1	NA	NA	NA	57077	NM_008671	17954	Mm.388694	NM_008671	ENSMUSG00000082229	Nap1l2	Bpx	nucleosome assembly protein 1-like 2	protein-coding	0.040000	0.537313	
mm_141208.1	chr17	27101343	27101543	-	1	NA	NA	NA	10198	NR_106142	102465779		NR_106142	ENSMUSG00000098826	Mir7677	Gm27400|mmu-mir-7677	microRNA 7677	ncRNA	0.010000	0.626866	
mm_164677.1	chr17	46572009	46572209	-	1	NA	NA	NA	-15947	NM_020493	20807	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0.010000	0.537313	
mm_146419.1	chr18	84719397	84719597	+	1	NA	NA	NA	-745	NM_173770	240479	Mm.472378	NM_173770	ENSMUSG00000047992	Fam69c	B230399E16Rik	family with sequence similarity 69, member C	protein-coding	0.015000	0.542289	-30(CCTTTTAACGCC,+,0.00)
mm_35788.1	chr4	46472045	46472245	-	1	NA	NA	NA	-17184	NM_053179	94181	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.015000	0.422886	
mm_79114.1	chr9	46270463	46270663	+	1	NA	NA	NA	1955	NM_080434	66113	Mm.29738	NM_080434	ENSMUSG00000032079	Apoa5	1300007O05Rik|Apoav|RAP3	apolipoprotein A-V	protein-coding	0.030000	0.587065	
mm_164358.1	chr16	22617914	22618114	-	1	NA	NA	NA	39217	NM_138650	110197	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0.025000	0.472637	
mm_29147.1	chr3	105932572	105932772	-	1	NA	NA	NA	-8	NM_001033780	433638	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	0.015000	0.437811	
mm_93726.1	chr10	119240017	119240217	-	1	NA	NA	NA	-62	NM_027994	71902	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	0.130000	0.751244	
mm_111489.1	chr12	98901344	98901544	-	1	NA	NA	NA	40	NM_001081191	319670	Mm.390484	NM_001081191	ENSMUSG00000051166	Eml5	BC027154|C130068M19Rik	echinoderm microtubule associated protein like 5	protein-coding	0.145000	0.796020	
mm_132349.1	chr16	33891878	33892078	+	1	NA	NA	NA	62313	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.020000	0.557214	
mm_161206.1	chr13	59706081	59706281	-	1	NA	NA	NA	16	NM_028157	72219	Mm.233883	NM_028157	ENSMUSG00000050876	Spata31d1a	1700013B16Rik|Fam75d1a|Fam75d3	spermatogenesis associated 31 subfamily D, member 1A	protein-coding	0.000000	0.572139	
mm_118160.1	chr13	105292910	105293110	-	1	NA	NA	NA	4	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.015000	0.497512	
mm_154757.1	chrX	10717487	10717687	+	1	NA	NA	NA	222	NM_001166635	68041	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	0.050000	0.631841	
mm_123409.1	chr14	63860181	63860381	-	1	NA	NA	NA	-31	NM_028228	72400	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	0.100000	0.631841	
mm_56039.1	chr6	86684395	86684595	-	1	NA	NA	NA	-4	NM_025665	66618	Mm.182650	NM_025665	ENSMUSG00000001158	Snrnp27	2610209M04Rik|AI449063|AU022368|Ry1	small nuclear ribonucleoprotein 27 (U4/U6.U5)	protein-coding	0.085000	0.626866	
mm_97849.1	chr11	83069187	83069387	+	1	NA	NA	NA	4175	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.010000	0.452736	
mm_103356.1	chr11	74851094	74851294	-	1	NA	NA	NA	17000	NR_105891	102465558		NR_105891	ENSMUSG00000098317	Mir6926	Gm27949|mmu-mir-6926	microRNA 6926	ncRNA	0.030000	0.532338	
mm_92573.1	chr10	79913594	79913794	-	1	NA	NA	NA	3236	NM_177994	109284	Mm.300416	NM_177994	ENSMUSG00000035781	R3hdm4	AI503502|C030046I01Rik	R3H domain containing 4	protein-coding	0.020000	0.606965	
mm_50399.1	chr6	48718674	48718874	+	1	NA	NA	NA	153	NM_146167	231932	Mm.30479	NM_146167	ENSMUSG00000043931	Gimap7	IAN7|Ian3	GTPase, IMAP family member 7	protein-coding	0.005000	0.527363	
mm_62289.1	chr7	99906421	99906621	+	1	NA	NA	NA	47303	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.005000	0.507463	
mm_123894.1	chr14	73048971	73049171	-	1	NA	NA	NA	43	NM_133720	70086	Mm.158324	NM_133720	ENSMUSG00000033470	Cysltr2	2300001H05Rik|CYSLT2R|Cltr2|Cyslt2	cysteinyl leukotriene receptor 2	protein-coding	0.025000	0.467662	
mm_153356.1	chr19	40163016	40163216	-	1	NA	NA	NA	24170	NM_145499	226105	Mm.29119	NM_145499	ENSMUSG00000060613	Cyp2c70	-	cytochrome P450, family 2, subfamily c, polypeptide 70	protein-coding	0.005000	0.358209	-86(GTGTTTTTAAAG,-,0.00),-84(GTTTTTAAAGAA,+,0.00)
mm_154871.1	chrX	20681250	20681450	+	1	NA	NA	NA	-6604	NM_001310456	18555	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	0.005000	0.457711	
mm_2509.1	chr1	106223806	106224006	+	1	NA	NA	NA	52037	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.000000	0.462687	87(CCATATATGGGA,+,0.00)
mm_43070.1	chr5	124446142	124446342	+	1	NA	NA	NA	-462	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.040000	0.557214	
mm_108348.1	chr12	80480137	80480337	+	1	NA	NA	NA	17142	NM_133798	97827	Mm.206631	NM_133798	ENSMUSG00000032705	Exd2	4930539P14Rik|C85658|Exdl2	exonuclease 3'-5' domain containing 2	protein-coding	0.015000	0.477612	-54(CTATTTATAGAC,+,0.00),9(TGCTTTATAAGA,-,0.00)
mm_60386.1	chr7	44473884	44474084	+	1	NA	NA	NA	3637	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.427861	
mm_161143.1	chr13	21981059	21981259	+	1	NA	NA	NA	-22	NM_001162928	195236	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	0.035000	0.522388	
mm_163384.1	chr12	53737635	53737835	+	1	NA	NA	NA	466139	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	0.000000	0.452736	
mm_134424.1	chr16	17894012	17894212	-	1	NA	NA	NA	-91	NM_009435	22114	Mm.439725	NM_009435	ENSMUSG00000041566	Tssk1	Stk22a|TSK-1|Tsk1|Tssk|Tssk1b	testis-specific serine kinase 1	protein-coding	0.010000	0.507463	
mm_142381.1	chr17	44736357	44736557	-	1	NA	NA	NA	191	NM_001145920	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.130000	0.741294	
mm_16943.1	chr2	15049065	15049265	-	1	NA	NA	NA	147	NM_001165942	74455	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	0.045000	0.527363	
mm_87364.1	chr10	43902134	43902334	+	1	NA	NA	NA	427	NM_130892	170728	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	0.040000	0.487562	
mm_17236.1	chr2	25581549	25581749	-	1	NA	NA	NA	-1550	NM_001005424	381353	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	-	predicted gene 996	protein-coding	0.035000	0.547264	
mm_6633.1	chr1	78537403	78537603	-	1	NA	NA	NA	26443	NM_026713	68393	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	0.015000	0.373134	
mm_153364.1	chr19	40271442	40271642	-	1	NA	NA	NA	74	NM_016861	54132	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	0.135000	0.741294	
mm_15592.1	chr2	160394423	160394623	+	1	NA	NA	NA	-27458	NM_010658	16658	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.015000	0.502488	
mm_77572.1	chr8	123432458	123432658	-	1	NA	NA	NA	-10398	NM_001253784	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.065000	0.582090	
mm_141670.1	chr17	33903959	33904159	-	1	NA	NA	NA	-1076	NR_040470	474160	Mm.206186	NR_040470	ENSMUSG00000092349	Platr17	-	pluripotency associated transcript 17	ncRNA	0.000000	0.532338	
mm_37814.1	chr4	130936038	130936238	-	1	NA	NA	NA	-8247	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.005000	0.492537	
mm_85830.1	chr9	110459141	110459341	-	1	NA	NA	NA	17453	NM_177771	270201	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0.005000	0.462687	
mm_167831.1	chr9	124424025	124424225	-	1	NA	NA	NA	338	NR_015516	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.120000	0.701493	
mm_138739.1	chr17	36994215	36994415	+	1	NA	NA	NA	-4811	NM_001115075	240095	Mm.246609	NM_001115075	ENSMUSG00000024459	H2-M5	CRW2|D130003B22Rik|H-2M5	histocompatibility 2, M region locus 5	protein-coding	0.020000	0.522388	-35(CCCTTTATGGTC,+,0.00)
mm_144088.1	chr17	94834686	94834886	-	1	NA	NA	NA	13	NR_045964	100038746	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	0.045000	0.552239	
mm_104397.1	chr11	94499882	94500082	-	1	NA	NA	NA	-8	NM_027984	71889	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	0.065000	0.661692	
mm_16521.1	chr2	181506604	181506804	+	1	NA	NA	NA	9562	NM_001291204	66314	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	0.015000	0.442786	
mm_45382.1	chr5	66132045	66132245	-	1	NA	NA	NA	18833	NM_001291226	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.010000	0.527363	
mm_55453.1	chr6	67339548	67339748	-	1	NA	NA	NA	46	NM_001311141	16162	Mm.188337	NM_008354	ENSMUSG00000018341	Il12rb2	A930027I18Rik|IL-12RB2|Ifnm	interleukin 12 receptor, beta 2	protein-coding	0.000000	0.472637	38(CCATATAAATGG,-,0.00)
mm_36269.1	chr4	63622335	63622535	-	1	NA	NA	NA	-6	NM_029324	75524	Mm.38543	NM_029324	ENSMUSG00000058935	1700018C11Rik	bM230C2.3	RIKEN cDNA 1700018C11 gene	protein-coding	0.015000	0.537313	
mm_97123.1	chr11	74925725	74925925	+	1	NA	NA	NA	-27	NM_001163311	27364	Mm.131443	NM_013761	ENSMUSG00000001323	Srr	M100034|Rgsc34|Srs	serine racemase	protein-coding	0.120000	0.706468	
mm_40452.1	chr5	53602448	53602648	+	1	NA	NA	NA	12062	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.000000	0.363184	
mm_66644.1	chr7	45655545	45655745	-	1	NA	NA	NA	10749	NM_018876	14344	Mm.290046	NM_018876	ENSMUSG00000055978	Fut2	-	fucosyltransferase 2	protein-coding	0.015000	0.427861	
mm_114464.1	chr13	67729138	67729338	+	1	NA	NA	NA	-24	NR_027969	68271	Mm.145530	NM_026649		Zfp85os	4930441O14Rik	zinc finger protein 85, opposite strand	ncRNA	0.020000	0.512438	
mm_68776.1	chr7	122066960	122067160	-	1	NA	NA	NA	26	NM_026140	67417	Mm.45171	NM_026140	ENSMUSG00000030871	Ears2	3230401I01Rik|mKIAA1970	glutamyl-tRNA synthetase 2, mitochondrial	protein-coding	0.110000	0.656716	
mm_167244.1	chr8	22339920	22340120	+	1	NA	NA	NA	56579	NM_199257	234129	Mm.450553	NM_181851	ENSMUSG00000031481	Tpte	Pten2	transmembrane phosphatase with tensin homology	protein-coding	0.005000	0.427861	
mm_26706.1	chr3	157946918	157947118	+	1	NA	NA	NA	-448	NM_001013806	433667	Mm.265806	NM_001013806	ENSMUSG00000039988	Ankrd13c	AI505652|AU022220	ankyrin repeat domain 13c	protein-coding	0.060000	0.542289	
mm_18321.1	chr2	57114811	57115011	-	1	NA	NA	NA	127	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.115000	0.721393	
mm_19867.1	chr2	114047234	114047434	-	1	NA	NA	NA	5541	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.005000	0.437811	
mm_117680.1	chr13	94155598	94155798	-	1	NA	NA	NA	97902	NM_172589	218454	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.000000	0.507463	
mm_73345.1	chr8	105349232	105349432	+	1	NA	NA	NA	1074	NM_001081332	277973	Mm.334766	NM_001081332	ENSMUSG00000014786	Slc9a5	Gm696	solute carrier family 9 (sodium/hydrogen exchanger), member 5	protein-coding	0.135000	0.781095	
mm_69351.1	chr7	130264126	130264326	-	1	NA	NA	NA	2582	NM_010207	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	0.040000	0.567164	-84(CCCTTTAAGGTA,+,0.00)
mm_28614.1	chr3	94886831	94887031	-	1	NA	NA	NA	27	NM_008945	19172	Mm.368	NM_008945	ENSMUSG00000005779	Psmb4	Pros-27	proteasome (prosome, macropain) subunit, beta type 4	protein-coding	0.065000	0.601990	
mm_68567.1	chr7	115663956	115664156	-	1	NA	NA	NA	137553	NM_001277328	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.000000	0.393035	
mm_52897.1	chr6	122644168	122644368	+	1	NA	NA	NA	17844	NM_139218	73708	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.040000	0.492537	
mm_98671.1	chr11	96282932	96283132	+	1	NA	NA	NA	1127	NM_010461	15416	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	0.085000	0.582090	
mm_95580.1	chr11	52816269	52816469	+	1	NA	NA	NA	51663	NM_177059	320027	Mm.44518	NM_177059	ENSMUSG00000036264	Fstl4	B230374F23Rik|SPIG1|mKIAA1061	follistatin-like 4	protein-coding	0.010000	0.323383	
mm_116253.1	chr13	34002663	34002863	-	1	NA	NA	NA	31	NM_001243192	20719	Mm.252210	NM_009254	ENSMUSG00000060147	Serpinb6a	4930482L21Rik|D330015H01Rik|PI-6|Serpinb6|Spi3|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6a	protein-coding	0.120000	0.691542	
mm_99567.1	chr11	103894029	103894229	+	1	NA	NA	NA	59927	NM_008740	18195	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	0.010000	0.477612	
mm_158103.1	chrX	101794339	101794539	-	1	NA	NA	NA	-54946	NM_001163610	100042480	Mm.232	NM_001163610	ENSMUSG00000079481	Nhsl2	1110062M06Rik|6430511F03|AI225852|AW488865|EG621083|ENSMUSG00000073037|Gm10456	NHS-like 2	protein-coding	0.105000	0.701493	
mm_110549.1	chr12	55489717	55489917	-	1	NA	NA	NA	2830	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.015000	0.353234	
mm_52470.1	chr6	114248005	114248205	+	1	NA	NA	NA	-34530	NM_178703	232333	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.010000	0.477612	
mm_55465.1	chr6	67535749	67535949	-	1	NA	NA	NA	-27	NM_020047	56753	Mm.439913	NM_020047	ENSMUSG00000051397	Tacstd2	C80403|EGP-1|GA733-1|Ly97|TROP2	tumor-associated calcium signal transducer 2	protein-coding	0.030000	0.572139	23(GCTTATAAGAGC,+,0.00)
mm_122058.1	chr14	30345704	30345904	-	1	NA	NA	NA	7682	NM_001302637	12289	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.010000	0.432836	68(TTCTTTATAGCC,+,0.00)
mm_46589.1	chr5	107725272	107725472	-	1	NA	NA	NA	433	NM_001267621	14581	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.065000	0.606965	
mm_74992.1	chr8	27202380	27202580	-	1	NA	NA	NA	67	NM_029674	76615	Mm.272794	NM_029674	ENSMUSG00000039720	Got1l1	1700083M11Rik	glutamic-oxaloacetic transaminase 1-like 1	protein-coding	0.020000	0.517413	
mm_44235.1	chr5	5265610	5265810	-	1	NA	NA	NA	358	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.010000	0.442786	
mm_93327.1	chr10	99261618	99261818	-	1	NA	NA	NA	-1513	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.140000	0.706468	
mm_132294.1	chr16	33380783	33380983	+	1	NA	NA	NA	108	NM_011749	22661	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0.075000	0.676617	
mm_145623.1	chr18	61109524	61109724	+	1	NA	NA	NA	4052	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.020000	0.606965	
mm_150833.1	chr19	44756812	44757012	+	1	NA	NA	NA	-482	NM_011037	18504	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0.120000	0.741294	
mm_37029.1	chr4	114987138	114987338	-	1	NA	NA	NA	-10	NM_025647	66588	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	0.145000	0.756219	
mm_158211.1	chrX	105875316	105875516	-	1	NA	NA	NA	53956	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.020000	0.432836	
mm_76840.1	chr8	105288976	105289176	-	1	NA	NA	NA	452	NM_001166394	74356	Mm.204876	NM_028888	ENSMUSG00000014837	4931428F04Rik	AI426165|Kiaa0895l	RIKEN cDNA 4931428F04 gene	protein-coding	0.025000	0.557214	
mm_51090.1	chr6	67146157	67146357	+	1	NA	NA	NA	-108850	NM_007836	13197	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.010000	0.537313	
mm_58802.1	chr7	16299796	16299996	+	1	NA	NA	NA	-9687	NM_133234	170770	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.115000	0.746269	
mm_113547.1	chr13	38010722	38010922	+	1	NA	NA	NA	-16632	NM_025965	107513	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0.020000	0.517413	
mm_145116.1	chr18	44333972	44334172	+	1	NA	NA	NA	-2	NM_001033621	58916	Mm.143804	NM_001033621	ENSMUSG00000024471	Myot	5530402I04Rik|Ttid	myotilin	protein-coding	0.010000	0.512438	
mm_168942.1	chr12	72049191	72049391	-	1	NA	NA	NA	21700	NM_181752	238252	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding	0.015000	0.437811	
mm_39957.1	chr5	32135928	32136128	+	1	NA	NA	NA	-444	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.115000	0.701493	
mm_23914.1	chr3	83044123	83044323	+	1	NA	NA	NA	5640	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.015000	0.472637	
mm_48654.1	chr5	145872312	145872512	-	1	NA	NA	NA	7442	NM_007818	13112	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	0.000000	0.388060	
mm_35659.1	chr4	43558304	43558504	-	1	NA	NA	NA	4179	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.010000	0.507463	-30(CTTCATAAAGCC,+,0.00)
mm_70170.1	chr7	143628044	143628244	-	1	NA	NA	NA	-299	NM_175649	244237	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	0.015000	0.472637	
mm_127275.1	chr15	99725629	99725829	+	1	NA	NA	NA	111	NM_183256	66379	Mm.5265	NM_183256	ENSMUSG00000023020	Cox14	2310016M24Rik|AA959804	cytochrome c oxidase assembly protein 14	protein-coding	0.100000	0.656716	
mm_161968.1	chr19	9895282	9895482	-	1	NA	NA	NA	4151	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.005000	0.547264	
mm_25147.1	chr3	102735119	102735319	+	1	NA	NA	NA	4	NM_001243132	70747	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	0.055000	0.592040	
mm_100235.1	chr11	117231775	117231975	+	1	NA	NA	NA	32214	NM_001113486	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.020000	0.582090	
mm_132023.1	chr16	26582242	26582442	+	1	NA	NA	NA	637	NM_008364	16180	Mm.253424	NM_008364	ENSMUSG00000022514	Il1rap	6430709H04Rik|AI255955|AV239853|IL-1RAcP	interleukin 1 receptor accessory protein	protein-coding	0.005000	0.497512	
mm_126518.1	chr15	81872392	81872592	+	1	NA	NA	NA	29	NM_080633	11429	Mm.154581	NM_080633	ENSMUSG00000022477	Aco2	Aco-2|Aco3|D10Wsu183e	aconitase 2, mitochondrial	protein-coding	0.070000	0.601990	-43(GCTTTTTTAAGG,-,0.00),-41(TTTTTTAAGGGC,+,0.00)
mm_158734.1	chrX	164027880	164028080	-	1	NA	NA	NA	30	NM_181315	56078	Mm.180953	NM_181315	ENSMUSG00000031373	Car5b	7330410H16Rik|CAVB|Ca5b|CarVb|D730005F19Rik	carbonic anhydrase 5b, mitochondrial	protein-coding	0.045000	0.601990	
mm_16493.1	chr2	181187211	181187411	+	1	NA	NA	NA	-32	NM_025598	66496	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0.095000	0.621891	
mm_171599.1	chr4	147738706	147738906	-	1	NA	NA	NA	-36175	NM_001127188	100503584	Mm.276881	NM_001127188	ENSMUSG00000062518	Zfp534	Gm13159|OTTMUSG00000010681	zinc finger protein 534	protein-coding	0.130000	0.711443	
mm_69632.1	chr7	137410860	137411060	-	1	NA	NA	NA	-204	NM_029886	77252	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.060000	0.567164	
mm_118687.1	chr14	22122343	22122543	+	1	NA	NA	NA	102731	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.288557	
mm_129696.1	chr15	81586234	81586434	-	1	NA	NA	NA	120	NM_177821	328572	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.085000	0.666667	
mm_143524.1	chr17	73870707	73870907	-	1	NA	NA	NA	65966	NM_020578	57440	Mm.18526	NM_020578	ENSMUSG00000024065	Ehd3	Ehd2	EH-domain containing 3	protein-coding	0.030000	0.507463	
mm_101740.1	chr11	43379018	43379218	-	1	NA	NA	NA	-4657	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.000000	0.353234	
mm_22970.1	chr3	32708604	32708804	+	1	NA	NA	NA	158	NM_019673	56456	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0.090000	0.631841	
mm_9743.1	chr1	180387383	180387583	-	1	NA	NA	NA	-56934	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.035000	0.557214	
mm_53492.1	chr6	135197948	135198148	+	1	NA	NA	NA	61	NM_028982	74525	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|Kiaa1467|mKIAA1467	family with sequence similarity 234, member B	protein-coding	0.115000	0.716418	
mm_4494.1	chr1	173641331	173641531	+	1	NA	NA	NA	10572	NM_175026	236312	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	0.000000	0.407960	
mm_158556.1	chrX	150177183	150177383	-	1	NA	NA	NA	136081	NM_001101501	333588	Mm.159296	NM_001101501		Gm15104	OTTMUSG00000018998	predicted gene 15104	protein-coding	0.005000	0.522388	
mm_139694.1	chr17	57441233	57441433	+	1	NA	NA	NA	82647	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.452736	
mm_55142.1	chr6	51464348	51464548	-	1	NA	NA	NA	5446	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.010000	0.432836	
mm_99796.1	chr11	107546768	107546968	+	1	NA	NA	NA	-1092	NM_198298	78455	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	0.070000	0.636816	
mm_93026.1	chr10	87957487	87957687	-	1	NA	NA	NA	-9084	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.000000	0.452736	
mm_140546.1	chr17	6827910	6828110	-	1	NA	NA	NA	-45230	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.110000	0.651741	51(GCTTTTATACTG,+,0.00)
mm_41507.1	chr5	92371560	92371760	+	1	NA	NA	NA	-8364	NR_038116	56066	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0.040000	0.542289	
mm_25243.1	chr3	103914519	103914719	+	1	NA	NA	NA	499	NM_172684	229675	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0.130000	0.676617	
mm_46476.1	chr5	105131519	105131719	-	1	NA	NA	NA	7933	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.487562	
mm_130355.1	chr15	97767164	97767364	-	1	NA	NA	NA	402	NM_001177810	223864	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.030000	0.567164	
mm_89004.1	chr10	81620522	81620722	+	1	NA	NA	NA	6700	NM_001163430	50721	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0.015000	0.472637	
mm_3065.1	chr1	134182367	134182567	+	1	NA	NA	NA	63	NM_007695	12654	Mm.38274	NM_007695	ENSMUSG00000064246	Chil1	AW208766|Brp39|Chi3l1|Gp39	chitinase-like 1	protein-coding	0.010000	0.557214	-35(GGGTATAAGAAG,-,0.00)
mm_19680.1	chr2	103454522	103454722	-	1	NA	NA	NA	30531	NM_009804	12359	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0.045000	0.462687	
mm_41493.1	chr5	92322888	92323088	+	1	NA	NA	NA	5091	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.015000	0.348259	-54(TCTTAAAAACCC,+,0.00)
mm_56001.1	chr6	86484786	86484986	-	1	NA	NA	NA	3341	NR_040293	381792	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.000000	0.388060	
mm_113382.1	chr13	33017030	33017230	+	1	NA	NA	NA	-10284	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	0.005000	0.417910	
mm_168173.1	chr10	55720508	55720708	-	1	NA	NA	NA	-386309	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding	0.035000	0.472637	
mm_166422.1	chr5	137151798	137151998	+	1	NA	NA	NA	-35691	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.010000	0.497512	
mm_7425.1	chr1	119827990	119828190	-	1	NA	NA	NA	8981	NM_019933	19258	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	0.005000	0.383085	
mm_112411.1	chr13	3633920	3634120	+	1	NA	NA	NA	-12	NM_178283	142688	Mm.253061	NM_178283	ENSMUSG00000033781	Asb13	2210015B19Rik|6430573K02Rik|Asb-13|C85285	ankyrin repeat and SOCS box-containing 13	protein-coding	0.065000	0.651741	
mm_148807.1	chr19	6276686	6276886	+	1	NA	NA	NA	-110	NM_010119	13660	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.145000	0.761194	
mm_4245.1	chr1	171389122	171389322	+	1	NA	NA	NA	262	NM_001005508	226652	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	0.015000	0.616915	
mm_108719.1	chr12	87163616	87163816	+	1	NA	NA	NA	-8231	NR_136901	625237	Mm.390529	NR_136901		Gm6566	EG625237	predicted gene 6566	ncRNA	0.015000	0.547264	
mm_123908.1	chr14	73325569	73325769	-	1	NA	NA	NA	122	NM_009029	19645	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb	retinoblastoma 1	protein-coding	0.195000	0.800995	
mm_137313.1	chr17	24885883	24886083	+	1	NA	NA	NA	367	NM_011956	26426	Mm.36718	NM_011956	ENSMUSG00000039183	Nubp2	D17Wsu11e	nucleotide binding protein 2	protein-coding	0.045000	0.512438	
mm_117895.1	chr13	99424314	99424514	-	1	NA	NA	NA	-11588	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.268657	
mm_6293.1	chr1	71028528	71028728	-	1	NA	NA	NA	74344	NM_007525	12021	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	ENSMUSG00000060893|ENSMUSG00000073653	BRCA1 associated RING domain 1	protein-coding	0.020000	0.452736	
mm_110345.1	chr12	36218080	36218280	-	1	NA	NA	NA	22	NM_027699	71156	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	0.015000	0.492537	68(TCTTTAATACCC,+,0.00)
mm_153620.1	chr19	43986411	43986611	-	1	NA	NA	NA	9	NM_030703	93721	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	0.025000	0.512438	
mm_27574.1	chr3	58692302	58692502	-	1	NA	NA	NA	-14	NM_009174	20439	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	seven in absentia 2	protein-coding	0.115000	0.736318	
mm_65500.1	chr7	25722767	25722967	-	1	NA	NA	NA	-3814	NM_028771	52132	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.010000	0.606965	
mm_74397.1	chr8	3240889	3241089	-	1	NA	NA	NA	38628	NM_010568	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.010000	0.348259	
mm_85825.1	chr9	110422218	110422418	-	1	NA	NA	NA	2510	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.015000	0.427861	
mm_162518.1	chr1	156723380	156723580	+	1	NA	NA	NA	-4570	NM_145413	215015	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	0.020000	0.482587	
mm_100319.1	chr11	118003420	118003620	+	1	NA	NA	NA	1250	NR_105898	102466768		NR_105898	ENSMUSG00000098958	Mir6933	Gm27856|mmu-mir-6933	microRNA 6933	ncRNA	0.020000	0.572139	
mm_17003.1	chr2	18698779	18698979	-	1	NA	NA	NA	-143	NM_001001334	381350	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	0.065000	0.592040	
mm_59011.1	chr7	19228296	19228496	+	1	NA	NA	NA	7	NM_207525	403187	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.120000	0.696517	
mm_55207.1	chr6	52217343	52217543	-	1	NA	NA	NA	1130	NM_010455	15404	Mm.294826	NM_010455	ENSMUSG00000038236	Hoxa7	AV118143|Hox-1.1|M6	homeobox A7	protein-coding	0.070000	0.467662	
mm_80731.1	chr9	94473259	94473459	+	1	NA	NA	NA	64722	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0.025000	0.522388	
mm_75661.1	chr8	66483920	66484120	-	1	NA	NA	NA	2487	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.020000	0.407960	
mm_54011.1	chr6	8180136	8180336	-	1	NA	NA	NA	12381	NM_001037865	213945	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	0.000000	0.373134	
mm_163327.1	chr12	8351270	8351470	-	1	NA	NA	NA	37937	NM_021429	58240	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.005000	0.512438	
mm_118364.1	chr13	115101781	115101981	-	1	NA	NA	NA	83	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.035000	0.522388	-36(GTCCCTTTAAGG,-,0.00),-34(CCCTTTAAGGTT,+,0.00)
mm_88187.1	chr10	70006129	70006329	+	1	NA	NA	NA	80697	NM_009670	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.000000	0.303483	
mm_118317.1	chr13	113180862	113181062	-	1	NA	NA	NA	-65	NM_008196	14945	Mm.56993	NM_008196	ENSMUSG00000042385	Gzmk	-	granzyme K	protein-coding	0.025000	0.462687	
mm_21276.1	chr2	156887136	156887336	-	1	NA	NA	NA	-158	NM_029983	77799	Mm.29264	NM_029983	ENSMUSG00000027636	Sla2	A930009E21Rik|AI430952|SLAP-2|SLAP2	Src-like-adaptor 2	protein-coding	0.025000	0.592040	
mm_80313.1	chr9	74848634	74848834	+	1	NA	NA	NA	297	NR_045284	100503019	Mm.482658	NR_045284	ENSMUSG00000066477	Gm16551	-	predicted gene 16551	ncRNA	0.050000	0.582090	
mm_121863.1	chr14	20733487	20733687	-	1	NA	NA	NA	975	NM_010811	17423	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0.015000	0.427861	
mm_89458.1	chr10	93184124	93184324	+	1	NA	NA	NA	21439	NR_035452	100316689		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	0.005000	0.283582	
mm_103547.1	chr11	77607736	77607936	-	1	NA	NA	NA	-21	NM_144825	216965	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	0.055000	0.666667	
mm_137306.1	chr17	24874805	24875005	+	1	NA	NA	NA	-3865	NM_008340	16005	Mm.3135	NM_008340	ENSMUSG00000046070	Igfals	ALS|Albs|mKIAA4111	insulin-like growth factor binding protein, acid labile subunit	protein-coding	0.005000	0.527363	-33(CACTATAAGAGG,-,0.00)
mm_20486.1	chr2	129895292	129895492	-	1	NA	NA	NA	-93933	NR_029452	654409	Mm.305555	NR_029452		4932416H05Rik	-	RIKEN cDNA 4932416H05 gene	ncRNA	0.015000	0.512438	
mm_28201.1	chr3	88281178	88281378	-	1	NA	NA	NA	15560	NM_029801	76927	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	0.025000	0.517413	
mm_72692.1	chr8	84969704	84969904	+	1	NA	NA	NA	182	NM_011563	21672	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0.050000	0.557214	
mm_109435.1	chr12	110694520	110694720	+	1	NA	NA	NA	1775	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.010000	0.393035	
mm_31298.1	chr4	45972701	45972901	+	1	NA	NA	NA	504	NM_146142	100121	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.095000	0.661692	
mm_14273.1	chr2	128708999	128709199	+	1	NA	NA	NA	10102	NM_008587	17289	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.010000	0.417910	-52(CCTTTTCTGGCG,+,0.00)
mm_50626.1	chr6	50200075	50200275	+	1	NA	NA	NA	61594	NM_018769	54722	Mm.248361	NM_018769	ENSMUSG00000029821	Dfna5	2310037D07Rik|4932441K13Rik|Dfna5h|EG14210|Fin15	deafness, autosomal dominant 5 (human)	protein-coding	0.000000	0.278607	
mm_158039.1	chrX	98888299	98888499	-	1	NA	NA	NA	2626	NM_052976	94190	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	0.000000	0.417910	
mm_74530.1	chr8	9589488	9589688	-	1	NA	NA	NA	181435	NM_173446	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding	0.005000	0.328358	
mm_57304.1	chr6	124708955	124709155	-	1	NA	NA	NA	3123	NM_013536	14791	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0.010000	0.457711	
mm_104450.1	chr11	95040457	95040657	-	1	NA	NA	NA	814	NM_133667	18604	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	0.010000	0.572139	
mm_24755.1	chr3	95434304	95434504	+	1	NA	NA	NA	14	NM_001037737	11863	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	0.065000	0.671642	
mm_132847.1	chr16	46010675	46010875	+	1	NA	NA	NA	-362	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.040000	0.477612	
mm_45217.1	chr5	53152776	53152976	-	1	NA	NA	NA	60576	NM_172710	231238	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0.015000	0.343284	
mm_88853.1	chr10	80930614	80930814	+	1	NA	NA	NA	623	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.030000	0.502488	
mm_92297.1	chr10	73282085	73282285	-	1	NA	NA	NA	-195480	NR_040646	327768	Mm.417745	NR_040646		A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0.005000	0.303483	-6(TTTTTAAGAGGC,+,0.00)
mm_22051.1	chr2	168281032	168281232	-	1	NA	NA	NA	-11801	NM_001081134	241794	Mm.425102	NM_001081134	ENSMUSG00000074575	Kcng1	AW536275|OTTMUSG00000016048	potassium voltage-gated channel, subfamily G, member 1	protein-coding	0.130000	0.800995	
mm_88728.1	chr10	80226598	80226798	+	1	NA	NA	NA	100	NM_023431	68114	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	0.180000	0.800995	
mm_103006.1	chr11	69695791	69695991	-	1	NA	NA	NA	207	NM_011614	21944	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0.075000	0.681592	
mm_45003.1	chr5	38344227	38344427	-	1	NA	NA	NA	-62	NR_046191	78172	Mm.243835	NR_046191	ENSMUSG00000106932	4930487D11Rik	-	RIKEN cDNA 4930487D11 gene	ncRNA	0.000000	0.492537	
mm_145867.1	chr18	65462815	65463015	+	1	NA	NA	NA	31918	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.015000	0.407960	
mm_36581.1	chr4	88032751	88032951	-	1	NA	NA	NA	556	NM_027326	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.110000	0.721393	
mm_110295.1	chr12	32208466	32208666	-	1	NA	NA	NA	83	NM_001146200	30955	Mm.101369	NM_020272	ENSMUSG00000020573	Pik3cg	5830428L06Rik|PI3Kgamma|p110gamma	phosphoinositide-3-kinase, catalytic, gamma polypeptide	protein-coding	0.025000	0.467662	
mm_93553.1	chr10	116114191	116114391	-	1	NA	NA	NA	-374	NM_001161855	619332	Mm.391427	NM_001033821	ENSMUSG00000074734	4933416C03Rik	-	RIKEN cDNA 4933416C03 gene	protein-coding	0.070000	0.606965	
mm_159528.1	chr4	62525041	62525241	+	1	NA	NA	NA	-127	NM_021498	59001	Mm.27444	NM_021498	ENSMUSG00000028394	Pole3	1810034K18Rik|YBL1	polymerase (DNA directed), epsilon 3 (p17 subunit)	protein-coding	0.055000	0.562189	
mm_62046.1	chr7	92336509	92336709	+	1	NA	NA	NA	101639	NM_001243047	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.427861	
mm_27460.1	chr3	52179854	52180054	-	1	NA	NA	NA	-74948	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.025000	0.626866	
mm_150387.1	chr19	36348428	36348628	+	1	NA	NA	NA	-30539	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.165000	0.761194	
mm_38507.1	chr4	141137285	141137485	-	1	NA	NA	NA	2411	NR_102344	213491	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0.005000	0.353234	
mm_90635.1	chr10	128494241	128494441	+	1	NA	NA	NA	-455	NM_010860	17904	Mm.337074	NM_010860	ENSMUSG00000090841	Myl6	ESMLC|LC17|LC17-GI|MLC-3|MLC1SM|Myln	myosin, light polypeptide 6, alkali, smooth muscle and non-muscle	protein-coding	0.070000	0.686567	
mm_73185.1	chr8	95332211	95332411	+	1	NA	NA	NA	27	NM_133954	101985	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	0.080000	0.686567	
mm_1506.1	chr1	72307367	72307567	+	1	NA	NA	NA	46	NM_009533	22596	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.060000	0.567164	
mm_54862.1	chr6	42597307	42597507	-	1	NA	NA	NA	-35	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.015000	0.398010	
mm_171567.1	chr4	147310438	147310638	+	1	NA	NA	NA	134672	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.015000	0.512438	
mm_169963.1	chr16	97490698	97490898	+	1	NA	NA	NA	14138	NM_020622	52793	Mm.327932	NM_020622	ENSMUSG00000022938	Fam3b	2-21|9030624C24Rik|D16Jhu19e|ORF9|Pander	family with sequence similarity 3, member B	protein-coding	0.000000	0.522388	
mm_115886.1	chr13	21897432	21897632	-	1	NA	NA	NA	-483	NR_035500	100316716		NR_035500	ENSMUSG00000088148	Mir1983	mmu-mir-1983	microRNA 1983	ncRNA	0.020000	0.477612	
mm_1723.1	chr1	75361957	75362157	+	1	NA	NA	NA	1765	NM_010043	13346	Mm.6712	NM_010043	ENSMUSG00000026208	Des	-	desmin	protein-coding	0.010000	0.552239	
mm_172097.1	chr6	26247541	26247741	+	1	NA	NA	NA	316215	NR_040771	626904	Mm.126787	NR_040771	ENSMUSG00000106799	Gm20756	-	predicted gene, 20756	ncRNA	0.040000	0.547264	
mm_39168.1	chr4	155669041	155669241	-	1	NA	NA	NA	113	NM_001256108	76580	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	0.090000	0.701493	
mm_141698.1	chr17	33996227	33996427	-	1	NA	NA	NA	4006	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.000000	0.532338	
mm_8314.1	chr1	144249006	144249206	-	1	NA	NA	NA	-2	NM_015811	50778	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.035000	0.472637	13(CGCTATATAAAG,-,0.00)
mm_131687.1	chr16	20678344	20678544	+	1	NA	NA	NA	5717	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.010000	0.606965	
mm_93277.1	chr10	96077473	96077673	-	1	NA	NA	NA	136910	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.020000	0.353234	
mm_8157.1	chr1	136949080	136949280	-	1	NA	NA	NA	4450	NM_001159769	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	0.085000	0.681592	
mm_11297.1	chr2	30171392	30171592	+	1	NA	NA	NA	-32	NM_007931	13804	Mm.474473	NM_007931	ENSMUSG00000015337	Endog	-	endonuclease G	protein-coding	0.085000	0.646766	-14(CGTCTTAAAAGG,-,0.00),-12(TCTTAAAAGGGC,+,0.00)
mm_83538.1	chr9	46233238	46233438	-	1	NA	NA	NA	1961	NM_001289833	11814	Mm.390161	NM_023114	ENSMUSG00000032081	Apoc3	apo-CIII|apoC-III	apolipoprotein C-III	protein-coding	0.005000	0.512438	
mm_46466.1	chr5	105121114	105121314	-	1	NA	NA	NA	-10922	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.000000	0.393035	
mm_15381.1	chr2	156538668	156538868	+	1	NA	NA	NA	-8808	NM_026661	68295	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	0.010000	0.532338	
mm_99050.1	chr11	99047221	99047421	+	1	NA	NA	NA	6061	NM_010517	16010	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.020000	0.582090	
mm_86722.1	chr10	19061267	19061467	+	1	NA	NA	NA	-45957	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.005000	0.398010	
mm_145033.1	chr18	39353397	39353597	+	1	NA	NA	NA	133748	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.000000	0.388060	-59(TCCTCTATAAGG,-,0.00)
mm_171329.1	chr3	98468764	98468964	-	1	NA	NA	NA	-11833	NM_001111336	15495	Mm.14309	NM_008294	ENSMUSG00000095143	Hsd3b4	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	protein-coding	0.035000	0.507463	
mm_61656.1	chr7	80501137	80501337	+	1	NA	NA	NA	33761	NM_007550	12144	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ helicase-like	protein-coding	0.030000	0.517413	
mm_10863.1	chr2	25080230	25080430	+	1	NA	NA	NA	7	NM_028093	72090	Mm.33403	NM_028093	ENSMUSG00000036813	Entpd8	-	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding	0.015000	0.527363	
mm_52379.1	chr6	113120883	113121083	+	1	NA	NA	NA	16048	NM_173005	72895	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0.030000	0.492537	
mm_2097.1	chr1	87755960	87756160	+	1	NA	NA	NA	49	NM_001205392	77040	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.105000	0.686567	
mm_98097.1	chr11	86618702	86618902	+	1	NA	NA	NA	-34644	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.000000	0.522388	
mm_139219.1	chr17	47729219	47729419	+	1	NA	NA	NA	2477	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.015000	0.562189	
mm_22806.1	chr3	27063954	27064154	+	1	NA	NA	NA	89800	NM_007900	13605	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536|mKIAA4037	ect2 oncogene	protein-coding	0.025000	0.482587	
mm_93422.1	chr10	108719395	108719595	-	1	NA	NA	NA	-19335	NM_203660	368203	Mm.452758	NM_203660		Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding	0.000000	0.343284	
mm_148810.1	chr19	6281965	6282165	+	1	NA	NA	NA	5169	NM_010119	13660	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.015000	0.482587	
mm_58693.1	chr7	12925317	12925517	+	1	NA	NA	NA	-1999	NM_029809	381845	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0.035000	0.522388	
mm_28001.1	chr3	83008430	83008630	-	1	NA	NA	NA	806	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.035000	0.487562	
mm_31015.1	chr4	40722387	40722587	+	1	NA	NA	NA	19	NM_008298	15502	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0.115000	0.721393	
mm_39816.1	chr5	30711507	30711707	+	1	NA	NA	NA	-288	NM_023047	65254	Mm.27732	NM_023047	ENSMUSG00000029168	Dpysl5	CRAM|CRMP-5|Crmp5	dihydropyrimidinase-like 5	protein-coding	0.055000	0.616915	
mm_39830.1	chr5	30814692	30814892	+	1	NA	NA	NA	151	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.125000	0.766169	-34(GTGCTTTTAAGC,-,0.00),-32(GCTTTTAAGCCG,+,0.00)
mm_160018.1	chr6	129717164	129717364	-	1	NA	NA	NA	-132	NM_001012520	503550	Mm.376476	NM_001012520	ENSMUSG00000067610	Klri1	-	killer cell lectin-like receptor family I member 1	protein-coding	0.010000	0.412935	
mm_143227.1	chr17	63312878	63313078	-	1	NA	NA	NA	-5	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.000000	0.447761	
mm_40554.1	chr5	58452965	58453165	+	1	NA	NA	NA	-67	NR_046190	78163	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA	0.010000	0.383085	
mm_30289.1	chr3	148989418	148989618	-	1	NA	NA	NA	-34883	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.050000	0.631841	
mm_51967.1	chr6	91758314	91758514	+	1	NA	NA	NA	48979	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.010000	0.532338	
mm_99685.1	chr11	106036796	106036996	+	1	NA	NA	NA	24	NM_027946	71833	Mm.307455	NM_027946	ENSMUSG00000049354	Dcaf7	1700012F10Rik|2610037L01Rik|C86529|HAN11|Wdr68	DDB1 and CUL4 associated factor 7	protein-coding	0.110000	0.646766	
mm_71041.1	chr8	33660786	33660986	+	1	NA	NA	NA	7648	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.000000	0.412935	-25(CCCCTTAAAAAA,-,0.00)
mm_24946.1	chr3	96601012	96601212	+	1	NA	NA	NA	-21	NM_001163170	280411	Mm.482147	NM_001163170	ENSMUSG00000049288	Lix1l	D130027M04Rik	Lix1-like	protein-coding	0.070000	0.676617	
mm_30692.1	chr4	11558847	11559047	+	1	NA	NA	NA	27	NM_001256145	623474	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	0.125000	0.711443	
mm_23178.1	chr3	40799932	40800132	+	1	NA	NA	NA	81	NR_045576	20873	Mm.3794	NM_011495	ENSMUSG00000025758	Plk4	1700028H20|AI385771|Sak|Stk18	polo-like kinase 4	protein-coding	0.100000	0.651741	-41(GCCTCTAAGAAG,-,0.00)
mm_90230.1	chr10	121374259	121374459	+	1	NA	NA	NA	9269	NM_029364	75612	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.025000	0.567164	
mm_18811.1	chr2	74518872	74519072	-	1	NA	NA	NA	59976	NM_001110209	69605	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	0.010000	0.422886	
mm_109540.1	chr12	111583527	111583727	+	1	NA	NA	NA	9117	NM_022801	17169	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	0.020000	0.482587	
mm_84355.1	chr9	64704483	64704683	-	1	NA	NA	NA	33173	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.020000	0.502488	
mm_126887.1	chr15	89456636	89456836	+	1	NA	NA	NA	2825	NM_021921	60597	Mm.173337	NM_021921	ENSMUSG00000022619	Mapk8ip2	3230402N03Rik|AI847694|AW049958|IB2|Jip2|R75148	mitogen-activated protein kinase 8 interacting protein 2	protein-coding	0.005000	0.542289	
mm_41715.1	chr5	101968661	101968861	+	1	NA	NA	NA	101160	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.025000	0.522388	54(ACTTTTAGAGAG,+,0.00)
mm_43941.1	chr5	145127815	145128015	+	1	NA	NA	NA	12174	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.005000	0.522388	
mm_136898.1	chr17	13014994	13015194	+	1	NA	NA	NA	7255	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.025000	0.427861	-18(CAGTATAAAAAC,-,0.00)
mm_68300.1	chr7	105745580	105745780	-	1	NA	NA	NA	-1342	NM_020024	24075	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	0.000000	0.422886	
mm_3007.1	chr1	133350575	133350775	+	1	NA	NA	NA	1	NM_031192	19701	Mm.220955	NM_031192	ENSMUSG00000070645	Ren1	D19352|Ren|Ren-1|Ren-A|Ren1c|Ren1d|Rn-1|Rnr	renin 1 structural	protein-coding	0.000000	0.527363	-33(GTGTATAAAAGA,-,0.00)
mm_116680.1	chr13	49248030	49248230	-	1	NA	NA	NA	33	NM_025491	66329	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.090000	0.666667	
mm_117311.1	chr13	67500382	67500582	-	1	NA	NA	NA	40	NM_001007575	238693	Mm.478914	NM_001007575	ENSMUSG00000071291	Zfp58	A530094I17Rik|Mfg-1|Mfg1|Rslcan5|Zfp817	zinc finger protein 58	protein-coding	0.040000	0.527363	
mm_114274.1	chr13	58214831	58215031	+	1	NA	NA	NA	722	NM_152234	56085	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	0.030000	0.472637	-35(TTTTATATAGGA,+,0.00)
mm_108019.1	chr12	73598399	73598599	+	1	NA	NA	NA	13703	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.020000	0.487562	87(GAGTATTAAGGG,-,0.00)
mm_44610.1	chr5	25472426	25472626	-	1	NA	NA	NA	26257	NM_001081383	231051	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3|mKIAA1506	lysine (K)-specific methyltransferase 2C	protein-coding	0.005000	0.333333	
mm_43225.1	chr5	129794260	129794460	+	1	NA	NA	NA	-201	NR_003681	100113364	Mm.449738	NR_003681	ENSMUSG00000093413	Snora15	MBI-79	small nucleolar RNA, H/ACA box 15	snoRNA	0.005000	0.422886	
mm_118693.1	chr14	22135628	22135828	+	1	NA	NA	NA	116016	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.333333	
mm_58669.1	chr7	7185565	7185765	+	1	NA	NA	NA	14312	NM_146179	232854	Mm.184857	NM_146179	ENSMUSG00000034538	Zfp418	A230102I05Rik	zinc finger protein 418	protein-coding	0.005000	0.348259	
mm_81231.1	chr9	107729423	107729623	+	1	NA	NA	NA	-19048	NM_011349	20350	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.005000	0.512438	
mm_162773.1	chr10	68136649	68136849	-	1	NA	NA	NA	141977	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.020000	0.572139	
mm_81467.1	chr9	109875855	109876055	+	1	NA	NA	NA	376	NM_007658	12530	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	0.140000	0.771144	
mm_135952.1	chr16	74412024	74412224	-	1	NA	NA	NA	-1212	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.050000	0.631841	
mm_42440.1	chr5	115429627	115429827	+	1	NA	NA	NA	42	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.180000	0.825871	
mm_50376.1	chr6	48684450	48684650	+	1	NA	NA	NA	-28	NM_001243200	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.015000	0.477612	
mm_116811.1	chr13	54379459	54379659	-	1	NA	NA	NA	8210	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.015000	0.587065	
mm_142981.1	chr17	56271156	56271356	-	1	NA	NA	NA	5511	NM_174989	106759	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.020000	0.552239	
mm_89490.1	chr10	93778516	93778716	+	1	NA	NA	NA	-52939	NM_183199	327799	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.010000	0.422886	
mm_115117.1	chr13	104228856	104229056	+	1	NA	NA	NA	-112	NM_172807	238831	Mm.98910	NM_172807	ENSMUSG00000021713	Ppwd1	4632422M10Rik|A330090G21Rik	peptidylprolyl isomerase domain and WD repeat containing 1	protein-coding	0.090000	0.616915	
mm_41073.1	chr5	87668896	87669096	+	1	NA	NA	NA	2788	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.005000	0.437811	
mm_108099.1	chr12	74804176	74804376	+	1	NA	NA	NA	373056	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0.015000	0.402985	
mm_96371.1	chr11	67236108	67236308	+	1	NA	NA	NA	-1604	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.010000	0.472637	
mm_160632.1	chr9	107541558	107541758	-	1	NA	NA	NA	207	NM_019720	56368	Mm.24833	NM_019720	ENSMUSG00000037190	Cyb561d2	AW049681|Tsp10	cytochrome b-561 domain containing 2	protein-coding	0.045000	0.582090	
mm_10522.1	chr2	16363425	16363625	+	1	NA	NA	NA	7221	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.005000	0.303483	
mm_45038.1	chr5	39644510	39644710	-	1	NA	NA	NA	21	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.075000	0.671642	
mm_86062.1	chr9	114640061	114640261	-	1	NA	NA	NA	39	NM_153585	78893	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	0.095000	0.671642	
mm_43422.1	chr5	136054372	136054572	+	1	NA	NA	NA	-2795	NM_027158	69665	Mm.75713	NM_027158	ENSMUSG00000006143	Upk3bl	2310043J07Rik	uroplakin 3B-like	protein-coding	0.010000	0.527363	
mm_142595.1	chr17	46763510	46763710	-	1	NA	NA	NA	102	NM_011195	19208	Mm.215173	NM_011195	ENSMUSG00000036858	Ptcra	gp33|pT-alpha|pT-alpha-TCR|pT[a]|pTa|pTalpha	pre T cell antigen receptor alpha	protein-coding	0.010000	0.611940	
mm_160334.1	chr8	13000555	13000755	+	1	NA	NA	NA	-25379	NM_010172	14068	Mm.4827	NM_010172	ENSMUSG00000031443	F7	AI132620|Cf7|FVII	coagulation factor VII	protein-coding	0.010000	0.477612	
mm_14521.1	chr2	132690041	132690241	+	1	NA	NA	NA	-142	NM_028637	73747	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0.025000	0.512438	
mm_69032.1	chr7	126797812	126798012	-	1	NA	NA	NA	1266	NM_001177307	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.010000	0.597015	
mm_93908.1	chr10	126978787	126978987	-	1	NA	NA	NA	170	NM_001113470	52468	Mm.29490	NM_146012	ENSMUSG00000078429	Ctdsp2	AI586070|D10Ertd73e|OS-4|OS4|SCP2	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	protein-coding	0.085000	0.666667	
mm_61905.1	chr7	90131021	90131221	+	1	NA	NA	NA	889	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.040000	0.477612	
mm_9945.1	chr1	190911665	190911865	-	1	NA	NA	NA	5	NM_178775	320119	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.090000	0.671642	
mm_23127.1	chr3	37655923	37656123	+	1	NA	NA	NA	16076	NM_001305442	24063	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty homolog 1 (Drosophila)	protein-coding	0.015000	0.502488	
mm_133104.1	chr16	65368256	65368456	+	1	NA	NA	NA	-152273	NM_008849	18736	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.000000	0.199005	
mm_158500.1	chrX	142390262	142390462	-	1	NA	NA	NA	173	NM_001033600	50790	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	0.065000	0.631841	3(CCTCTTAAGGCC,+,0.00)
mm_155345.1	chrX	68678533	68678733	+	1	NA	NA	NA	92	NM_001290424	14265	Mm.3451	NM_008031	ENSMUSG00000000838	Fmr1	FMRP|Fmr-1	fragile X mental retardation syndrome 1	protein-coding	0.135000	0.706468	
mm_145704.1	chr18	62657235	62657435	+	1	NA	NA	NA	-61071	NM_001001803	408198	Mm.478742	NM_001001803	ENSMUSG00000060201	Spink7	EG408198|Ecg2	serine peptidase inhibitor, Kazal type 7 (putative)	protein-coding	0.005000	0.427861	
mm_115768.1	chr13	19306072	19306272	-	1	NA	NA	NA	89641	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.412935	
mm_28714.1	chr3	95658475	95658675	-	1	NA	NA	NA	-146	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.110000	0.631841	
mm_75818.1	chr8	70419927	70420127	-	1	NA	NA	NA	19546	NM_001004062	382056	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	0.010000	0.606965	
mm_87982.1	chr10	63859033	63859233	+	1	NA	NA	NA	38078	NM_001164519	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.005000	0.373134	-27(CCATTTAAAAAC,+,0.00)
mm_129307.1	chr15	77561772	77561972	-	1	NA	NA	NA	20	NR_040310	76409	Mm.183491	NR_040310	ENSMUSG00000101113	1700025B11Rik	-	RIKEN cDNA 1700025B11 gene	ncRNA	0.000000	0.497512	
mm_11429.1	chr2	31961919	31962119	+	1	NA	NA	NA	11716	NM_145144	108897	Mm.24838	NM_145144	ENSMUSG00000001864	Aif1l	2810003C17Rik|AI043124|C87647|Iba2	allograft inflammatory factor 1-like	protein-coding	0.010000	0.537313	
mm_20249.1	chr2	126499749	126499949	-	1	NA	NA	NA	-8296	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	0.030000	0.467662	
mm_162353.1	chr1	55412113	55412313	+	1	NA	NA	NA	6267	NM_001114663	227120	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.005000	0.437811	
mm_49924.1	chr6	39379885	39380085	+	1	NA	NA	NA	-1443	NM_011226	19331	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	0.015000	0.482587	
mm_14243.1	chr2	128015085	128015285	+	1	NA	NA	NA	-110853	NM_207681	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.000000	0.417910	
mm_124843.1	chr15	9435961	9436161	+	1	NA	NA	NA	33	NM_029341	75568	Mm.82143	NM_029341	ENSMUSG00000039676	Capsl	1700028N11Rik|AW125205	calcyphosine-like	protein-coding	0.030000	0.547264	
mm_107244.1	chr12	26479128	26479328	+	1	NA	NA	NA	10013	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.000000	0.412935	
mm_145689.1	chr18	61952879	61953079	+	1	NA	NA	NA	-96	NM_172628	225608	Mm.262320	NM_172628	ENSMUSG00000045629	Sh3tc2	D430044G18Rik	SH3 domain and tetratricopeptide repeats 2	protein-coding	0.035000	0.656716	
mm_107662.1	chr12	52829084	52829284	+	1	NA	NA	NA	129801	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.020000	0.497512	
mm_35425.1	chr4	35225084	35225284	-	1	NA	NA	NA	696	NM_001081343	73205	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585	RIKEN cDNA 3110043O21 gene	protein-coding	0.020000	0.517413	-55(ACTTATTAAAGG,-,0.00)
mm_46520.1	chr5	105338958	105339158	-	1	NA	NA	NA	7414	NM_001039647	634650	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	0.000000	0.388060	
mm_106618.1	chr11	120820201	120820401	-	1	NA	NA	NA	4246	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.025000	0.527363	
mm_99662.1	chr11	105901878	105902078	+	1	NA	NA	NA	42169	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.005000	0.393035	
mm_61759.1	chr7	82771523	82771723	+	1	NA	NA	NA	-15979	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.050000	0.646766	
mm_167771.1	chr9	111025971	111026171	-	1	NA	NA	NA	6779	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.035000	0.587065	
mm_2362.1	chr1	93006238	93006438	+	1	NA	NA	NA	4	NM_001159658	208760	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0.010000	0.532338	
mm_120812.1	chr14	75131029	75131229	+	1	NA	NA	NA	6	NM_001247984	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.070000	0.651741	
mm_64294.1	chr7	141859049	141859249	+	1	NA	NA	NA	20077	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.015000	0.522388	
mm_49320.1	chr6	18853557	18853757	+	1	NA	NA	NA	5022	NM_133939	76522	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	0.025000	0.427861	
mm_32752.1	chr4	116686470	116686670	+	1	NA	NA	NA	-548	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.025000	0.407960	
mm_1719.1	chr1	75360136	75360336	+	1	NA	NA	NA	-56	NM_010043	13346	Mm.6712	NM_010043	ENSMUSG00000026208	Des	-	desmin	protein-coding	0.040000	0.681592	
mm_29516.1	chr3	116424018	116424218	-	1	NA	NA	NA	-86	NM_001173553	229776	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.055000	0.651741	-5(GTCCCTTTAAGG,-,0.00),-4(TCCCTTTAAGGG,-,0.00),-3(CCCTTTAAGGGA,+,0.00),-2(CCTTTAAGGGAT,+,0.00)
mm_77855.1	chr9	5311892	5312092	+	1	NA	NA	NA	3143	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.000000	0.353234	
mm_116585.1	chr13	47106115	47106315	-	1	NA	NA	NA	6	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.160000	0.726368	
mm_161001.1	chr11	116359288	116359488	-	1	NA	NA	NA	-24034	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.030000	0.532338	
mm_18627.1	chr2	69206039	69206239	-	1	NA	NA	NA	74	NM_025565	66442	Mm.272969	NM_025565	ENSMUSG00000005233	Spc25	2600017H08Rik|2610205L13Rik|Spbc25	SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	0.080000	0.631841	
mm_98941.1	chr11	98383724	98383924	+	1	NA	NA	NA	13	NM_011540	21393	Mm.10762	NM_011540	ENSMUSG00000007877	Tcap	AI503981|AJ223855	titin-cap	protein-coding	0.010000	0.552239	-33(GGCTATTTAAAG,-,0.00),-31(CTATTTAAAGGG,+,0.00),-31(CTATTTAAAGGG,-,0.00)
mm_103122.1	chr11	70204934	70205134	-	1	NA	NA	NA	-8876	NM_153081	216867	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0.005000	0.422886	3(GACTATATATAG,-,0.00)
mm_131614.1	chr16	19760197	19760397	+	1	NA	NA	NA	63	NM_001159407	108105	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	0.050000	0.616915	
mm_55415.1	chr6	65024652	65024852	-	1	NA	NA	NA	-17915	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.005000	0.492537	8(GCTTTTAGATCA,+,0.00)
mm_26194.1	chr3	138489679	138489879	+	1	NA	NA	NA	-397	NM_175224	75624	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	0.075000	0.587065	
mm_62156.1	chr7	97140250	97140450	+	1	NA	NA	NA	58599	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.005000	0.308458	
mm_161424.1	chr15	41789366	41789566	+	1	NA	NA	NA	-49	NM_001130163	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.065000	0.587065	88(AACTTTAAAAAC,-,0.00)
mm_140114.1	chr17	78916391	78916591	+	1	NA	NA	NA	-8	NM_001177403	68554	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	0.060000	0.597015	
mm_123148.1	chr14	57099456	57099656	-	1	NA	NA	NA	5146	NM_008125	14619	Mm.390683	NM_008125	ENSMUSG00000046352	Gjb2	AI325222|Cnx26|Cx26|Gjb-2	gap junction protein, beta 2	protein-coding	0.005000	0.328358	
mm_40825.1	chr5	72802999	72803199	+	1	NA	NA	NA	-50322	NM_001122754	22165	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.005000	0.462687	-35(GCTTATTTAAGC,-,0.00)
mm_118791.1	chr14	24118897	24119097	+	1	NA	NA	NA	30120	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.005000	0.412935	
mm_138276.1	chr17	34605759	34605959	+	1	NA	NA	NA	-2	NM_001163379	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.065000	0.711443	
mm_127338.1	chr15	100478697	100478897	+	1	NA	NA	NA	9763	NM_134093	68614	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	0.015000	0.462687	
mm_142315.1	chr17	42876546	42876746	-	1	NA	NA	NA	-222	NM_009847	12488	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.135000	0.736318	
mm_160192.1	chr7	60140131	60140331	-	1	NA	NA	NA	-12	NM_001082962	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding	0.010000	0.562189	
mm_110361.1	chr12	40037936	40038136	-	1	NA	NA	NA	-49	NM_001039515	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.195000	0.786070	
mm_68311.1	chr7	105787389	105787589	-	1	NA	NA	NA	61	NM_001162943	233651	Mm.334108	NM_001162943	ENSMUSG00000036862	Dchs1	3110041P15Rik|C130033F22Rik|CDH25|FIB1|Gm165|PCDH16	dachsous 1 (Drosophila)	protein-coding	0.155000	0.781095	
mm_577.1	chr1	39193669	39193869	+	1	NA	NA	NA	-503	NM_008719	18143	Mm.2380	NM_008719	ENSMUSG00000026077	Npas2	MOP4|bHLHe9	neuronal PAS domain protein 2	protein-coding	0.120000	0.746269	
mm_86184.1	chr9	119322297	119322497	-	1	NA	NA	NA	30	NR_045693	108737	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	0.115000	0.716418	
mm_43544.1	chr5	137553417	137553617	+	1	NA	NA	NA	-38	NM_031404	83766	Mm.31646	NM_031404	ENSMUSG00000029712	Actl6b	Actl6|ArpNa|Baf53b	actin-like 6B	protein-coding	0.125000	0.701493	-81(TACCTTTAAAGC,-,0.00),-79(CCTTTAAAGCAG,+,0.00)
mm_71356.1	chr8	45658665	45658865	+	1	NA	NA	NA	-3228	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.010000	0.462687	80(CCTTTTAAAAAG,+,0.00),80(CCTTTTAAAAAG,-,0.00)
mm_168373.1	chr11	21259069	21259269	+	1	NA	NA	NA	20137	NM_001290628	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.010000	0.388060	
mm_107106.1	chr12	17786393	17786593	+	1	NA	NA	NA	95679	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.040000	0.567164	
mm_47724.1	chr5	130023131	130023331	-	1	NA	NA	NA	1100	NM_133768	109900	Mm.23869	NM_133768	ENSMUSG00000025533	Asl	2510006M18Rik	argininosuccinate lyase	protein-coding	0.010000	0.402985	
mm_105958.1	chr11	115419843	115420043	-	1	NA	NA	NA	-24	NM_027862	71679	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	0.055000	0.572139	
mm_47220.1	chr5	121163125	121163325	-	1	NA	NA	NA	28172	NM_001109992	19247	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0.025000	0.542289	
mm_143106.1	chr17	57087632	57087832	-	1	NA	NA	NA	50	NM_009451	22153	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	0.050000	0.611940	
mm_67405.1	chr7	80025024	80025224	-	1	NA	NA	NA	310	NM_001146000	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.085000	0.636816	
mm_25229.1	chr3	103860221	103860421	+	1	NA	NA	NA	44	NM_008979	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.010000	0.497512	
mm_79232.1	chr9	50496689	50496889	+	1	NA	NA	NA	2264	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.005000	0.517413	
mm_39217.1	chr4	156186147	156186347	-	1	NA	NA	NA	11241	NM_021604	11603	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0.085000	0.676617	
mm_84723.1	chr9	73988143	73988343	-	1	NA	NA	NA	-54676	NM_001081153	208898	Mm.41035	NM_001081153	ENSMUSG00000062151	Unc13c	1500037O19Rik|AU019458|D9Ertd414e|Munc13-3|Unc13h3	unc-13 homolog C (C. elegans)	protein-coding	0.000000	0.452736	
mm_69715.1	chr7	140154629	140154829	-	1	NA	NA	NA	-70	NM_183147	212518	Mm.246858	NM_183147	ENSMUSG00000045733	Sprn	C630041J07	shadow of prion protein	protein-coding	0.050000	0.621891	
mm_12541.1	chr2	72297804	72298004	+	1	NA	NA	NA	12203	NM_178084	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.030000	0.582090	
mm_11821.1	chr2	44335784	44335984	+	1	NA	NA	NA	-270560	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.000000	0.338308	
mm_29239.1	chr3	107215883	107216083	-	1	NA	NA	NA	5749	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.512438	
mm_159245.1	chr2	151098143	151098343	+	1	NA	NA	NA	-2	NM_001097977	433486	Mm.422661	NM_001097977	ENSMUSG00000079006	Gm14151	OTTMUSG00000015806	predicted gene 14151	protein-coding	0.015000	0.467662	
mm_104040.1	chr11	86304632	86304832	-	1	NA	NA	NA	-47164	NM_027421	70422	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0.005000	0.288557	-6(GAGCCTTAAAGC,-,0.00)
mm_90577.1	chr10	128254067	128254267	+	1	NA	NA	NA	36	NM_133996	28194	Mm.439846	NM_133996	ENSMUSG00000051716	Apon	AI195275|D10Ucla2	apolipoprotein N	protein-coding	0.010000	0.502488	
mm_136722.1	chr17	8195870	8196070	+	1	NA	NA	NA	30452	NM_201230	75296	Mm.227250	NM_201230	ENSMUSG00000069135	Fgfr1op	4930553O10Rik|FOP	Fgfr1 oncogene partner	protein-coding	0.015000	0.482587	
mm_138550.1	chr17	35264308	35264508	+	1	NA	NA	NA	1285	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.025000	0.577114	
mm_153531.1	chr19	41848200	41848400	-	1	NA	NA	NA	-168	NM_177603	212398	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	0.090000	0.651741	
mm_34654.1	chr4	150854278	150854478	+	1	NA	NA	NA	571	NR_040649	73348	Mm.396218	NR_040649	ENSMUSG00000078492	1700045H11Rik	-	RIKEN cDNA 1700045H11 gene	ncRNA	0.020000	0.537313	
mm_85222.1	chr9	97018765	97018965	-	1	NA	NA	NA	-510	NM_145134	211949	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0.115000	0.746269	
mm_40612.1	chr5	64780918	64781118	+	1	NA	NA	NA	-22505	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.010000	0.477612	
mm_6952.1	chr1	85956643	85956843	-	1	NA	NA	NA	4312	NM_001033290	227326	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0.010000	0.527363	
mm_12048.1	chr2	59160943	59161143	+	1	NA	NA	NA	193	NM_175464	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.110000	0.741294	
mm_125949.1	chr15	76248729	76248929	+	1	NA	NA	NA	638	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.035000	0.587065	
mm_35914.1	chr4	52445328	52445528	-	1	NA	NA	NA	6207	NM_001301412	14211	Mm.2999	NM_008017	ENSMUSG00000028312	Smc2	5730502P04Rik|AI255214|AW545314|CAP-E|CAPE|Fin16|SMC-2|Smc2l1	structural maintenance of chromosomes 2	protein-coding	0.010000	0.402985	
mm_71408.1	chr8	46471599	46471799	+	1	NA	NA	NA	662	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.090000	0.616915	
mm_11264.1	chr2	29984021	29984221	+	1	NA	NA	NA	-11829	NR_105963	102465603		NR_105963	ENSMUSG00000098453	Mir6997	Gm27310|mmu-mir-6997	microRNA 6997	ncRNA	0.000000	0.393035	
mm_110661.1	chr12	59131186	59131386	-	1	NA	NA	NA	-167	NM_001165253	338320	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.130000	0.706468	-34(GACCTTAAAGGG,-,0.00),-32(CCTTAAAGGGCC,+,0.00)
mm_84843.1	chr9	78378454	78378654	-	1	NA	NA	NA	34	NM_026480	67968	Mm.26883	NM_026480	ENSMUSG00000032346	Ooep	2410146L05Rik|Floped|Moep19|Sddr	oocyte expressed protein	protein-coding	0.070000	0.666667	
mm_34871.1	chr4	155558870	155559070	+	1	NA	NA	NA	-3422	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.025000	0.527363	
mm_49458.1	chr6	29398863	29399063	+	1	NA	NA	NA	37	NM_001201378	232664	Mm.251303	NM_145574	ENSMUSG00000029769	Ccdc136	4921511K06Rik|BC006583	coiled-coil domain containing 136	protein-coding	0.010000	0.492537	
mm_48945.1	chr6	4539496	4539696	+	1	NA	NA	NA	33978	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.035000	0.532338	
mm_120989.1	chr14	79290132	79290332	+	1	NA	NA	NA	11403	NM_025427	66214	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	0.035000	0.497512	
mm_134497.1	chr16	18811541	18811741	-	1	NA	NA	NA	-2	NM_001161623	12544	Mm.1248	NM_009862	ENSMUSG00000000028	Cdc45	Cdc45l	cell division cycle 45	protein-coding	0.055000	0.537313	
mm_32788.1	chr4	116720973	116721173	+	1	NA	NA	NA	118	NM_146151	230661	Mm.482431	NM_146151	ENSMUSG00000033985	Tesk2	-	testis-specific kinase 2	protein-coding	0.080000	0.686567	
mm_101693.1	chr11	40750318	40750518	-	1	NA	NA	NA	4868	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.005000	0.373134	
mm_111985.1	chr12	110478560	110478760	-	1	NA	NA	NA	-7079	NM_001081457	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.015000	0.492537	47(CCTTTTCAAGAG,+,0.00)
mm_35550.1	chr4	41507687	41507887	-	1	NA	NA	NA	-23	NM_001253778	73721	Mm.45614	NM_028624	ENSMUSG00000028441	1110017D15Rik	Cbe1|Smrp1	RIKEN cDNA 1110017D15 gene	protein-coding	0.040000	0.552239	
mm_91300.1	chr10	24916035	24916235	-	1	NA	NA	NA	5471	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.035000	0.517413	
mm_165028.1	chr19	32757588	32757788	+	1	NA	NA	NA	111	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.115000	0.726368	
mm_150478.1	chr19	38930835	38931035	+	1	NA	NA	NA	-55	NM_008234	15201	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	0.145000	0.676617	
mm_71142.1	chr8	39046523	39046723	+	1	NA	NA	NA	40756	NM_030254	80286	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	0.040000	0.522388	
mm_44719.1	chr5	30960076	30960276	-	1	NA	NA	NA	151	NM_001294302	50907	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0.115000	0.676617	
mm_170522.1	chr19	3282829	3283029	-	1	NA	NA	NA	28	NM_001347420	353242	Mm.74084	NM_172252	ENSMUSG00000024829	Mrpl21	BC028768	mitochondrial ribosomal protein L21	protein-coding	0.065000	0.611940	
mm_84824.1	chr9	77976812	77977012	-	1	NA	NA	NA	59547	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.030000	0.492537	
mm_45862.1	chr5	87929775	87929975	-	1	NA	NA	NA	4242	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.010000	0.467662	
mm_94994.1	chr11	31871570	31871770	+	1	NA	NA	NA	730	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.005000	0.393035	
mm_29810.1	chr3	127837362	127837562	-	1	NA	NA	NA	30	NM_001346718	211556	Mm.403486	NM_145964	ENSMUSG00000074238	Ap1ar	AA407621|C78909|Gadkin	adaptor-related protein complex 1 associated regulatory protein	protein-coding	0.165000	0.810945	
mm_76612.1	chr8	91133933	91134133	-	1	NA	NA	NA	-6	NM_001302268	14339	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	0.100000	0.696517	
mm_89618.1	chr10	96173141	96173341	+	1	NA	NA	NA	-52966	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.010000	0.407960	
mm_20046.1	chr2	120154506	120154706	-	1	NA	NA	NA	-31	NM_133838	98878	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.110000	0.651741	
mm_107050.1	chr12	16232200	16232400	+	1	NA	NA	NA	357470	NM_015763	14245	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188	lipin 1	protein-coding	0.005000	0.462687	
mm_21026.1	chr2	152413388	152413588	-	1	NA	NA	NA	1556	NM_175126	67917	Mm.391810	NM_175126	ENSMUSG00000074682	Zcchc3	2810406K24Rik	zinc finger, CCHC domain containing 3	protein-coding	0.035000	0.432836	55(TTTTTTAAACCG,+,0.00)
mm_55945.1	chr6	85125994	85126194	-	1	NA	NA	NA	0	NM_001034902	545861	Mm.321419	NM_001034902	ENSMUSG00000072952	Gm5878	EG545861	predicted gene 5878	protein-coding	0.110000	0.686567	
mm_37161.1	chr4	117148127	117148327	-	1	NA	NA	NA	6347	NR_028524	100217424		NR_028524	ENSMUSG00000065680	Snord38a	MBII-329	small nucleolar RNA, C/D box 38A	snoRNA	0.020000	0.522388	
mm_95259.1	chr11	44667459	44667659	+	1	NA	NA	NA	49459	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.000000	0.393035	
mm_162564.1	chr1	172430853	172431053	+	1	NA	NA	NA	-44407	NM_029612	98365	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	0.015000	0.547264	
mm_28036.1	chr3	83789851	83790051	-	1	NA	NA	NA	23630	NM_009144	20319	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0.100000	0.691542	
mm_69748.1	chr7	140955808	140956008	-	1	NA	NA	NA	53	NM_030694	80876	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.025000	0.537313	
mm_145062.1	chr18	40512926	40513126	+	1	NA	NA	NA	254665	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.010000	0.447761	
mm_138378.1	chr17	35024010	35024210	+	1	NA	NA	NA	3906	NR_028258	78376	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	0.005000	0.547264	
mm_171788.1	chr5	113767000	113767200	+	1	NA	NA	NA	4549	NM_016926	53890	Mm.29594	NM_016926	ENSMUSG00000018974	Sart3	AU045857|mKIAA0156	squamous cell carcinoma antigen recognized by T cells 3	protein-coding	0.040000	0.517413	
mm_114459.1	chr13	67451153	67451353	+	1	NA	NA	NA	371	NM_177712	238692	Mm.486478	NM_177712	ENSMUSG00000069206	Zfp874a	C330011K17Rik|Rslcan15|Zfp874	zinc finger protein 874a	protein-coding	0.015000	0.477612	
mm_90693.1	chr10	130004259	130004459	+	1	NA	NA	NA	-13004	NM_146675	258670	Mm.271512	NM_146675	ENSMUSG00000048745	Olfr820	MOR116-1	olfactory receptor 820	protein-coding	0.010000	0.442786	-60(TTCCCTAAAAGA,-,0.00)
mm_49531.1	chr6	30102045	30102245	+	1	NA	NA	NA	25824	NM_001164229	18181	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	0.020000	0.542289	
mm_104157.1	chr11	87217636	87217836	-	1	NA	NA	NA	90661	NM_197987	68729	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.015000	0.477612	
mm_157223.1	chrX	13524082	13524282	-	1	NA	NA	NA	56510	NM_173415	236690	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	0.000000	0.467662	
mm_33710.1	chr4	133813448	133813648	+	1	NA	NA	NA	-59937	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.160000	0.805970	
mm_50265.1	chr6	45059510	45059710	+	1	NA	NA	NA	-451	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.025000	0.661692	
mm_117324.1	chr13	67830809	67831009	-	1	NA	NA	NA	76	NR_045194	320163	Mm.444711	NR_045194	ENSMUSG00000097276	4930525G20Rik	-	RIKEN cDNA 4930525G20 gene	ncRNA	0.035000	0.502488	
mm_138337.1	chr17	34898496	34898696	+	1	NA	NA	NA	104	NM_147151	110147	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0.145000	0.781095	
mm_66431.1	chr7	44668396	44668596	-	1	NA	NA	NA	2347	NM_001271540	71960	Mm.158289	NM_028021	ENSMUSG00000030739	Myh14	2400004E04Rik|II-C|NHMCII|NMHC II-C	myosin, heavy polypeptide 14	protein-coding	0.015000	0.626866	
mm_158079.1	chrX	101264878	101265078	-	1	NA	NA	NA	-986	NM_001317221	245536	Mm.212463	NM_001033362	ENSMUSG00000090141	Gm614	-	predicted gene 614	protein-coding	0.015000	0.582090	-47(GTGTCTAAAGGG,-,0.00)
mm_53676.1	chr6	141875949	141876149	+	1	NA	NA	NA	-19878	NM_030687	28250	Mm.255586	NM_030687	ENSMUSG00000030237	Slco1a4	AI785519|Oatp1a4|Oatp2|Slc21a5	solute carrier organic anion transporter family, member 1a4	protein-coding	0.005000	0.437811	
mm_154159.1	chr19	58455745	58455945	-	1	NA	NA	NA	-447	NM_010279	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.080000	0.686567	
mm_94418.1	chr11	5864129	5864329	+	1	NA	NA	NA	2363	NM_001291857	11568	Mm.3317	NM_009636	ENSMUSG00000020473	Aebp1	ACLP	AE binding protein 1	protein-coding	0.025000	0.577114	
mm_105300.1	chr11	102553124	102553324	-	1	NA	NA	NA	2934	NM_001159492	237943	Mm.260282	NM_001159492	ENSMUSG00000034621	Gpatch8	5430405G24Rik|AU018890|ENSMUSG00000075516|Fbm1|Gpatc8|mKIAA0553	G patch domain containing 8	protein-coding	0.005000	0.323383	-71(AGCCTTTTAAGG,-,0.00),-69(CCTTTTAAGGTT,+,0.00)
mm_87032.1	chr10	28668356	28668556	+	1	NA	NA	NA	96	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.015000	0.542289	
mm_21612.1	chr2	164256191	164256391	-	1	NA	NA	NA	352	NM_173377	329557	Mm.118769	NM_173377	ENSMUSG00000050383	Svs3b	9530004A22Rik	seminal vesicle secretory protein 3B	protein-coding	0.000000	0.422886	
mm_89201.1	chr10	86348380	86348580	+	1	NA	NA	NA	48068	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.000000	0.402985	
mm_103118.1	chr11	70092029	70092229	-	1	NA	NA	NA	-515	NM_007493	11890	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	0.020000	0.592040	
mm_117281.1	chr13	65205865	65206065	-	1	NA	NA	NA	-249	NM_175290	97895	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	0.030000	0.462687	
mm_18322.1	chr2	57114839	57115039	-	1	NA	NA	NA	99	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.125000	0.721393	
mm_151382.1	chr19	56287859	56288059	+	1	NA	NA	NA	47	NM_146101	226243	Mm.25791	NM_146101	ENSMUSG00000025075	Habp2	AI035669|FSAP|HABP|HGFAL|PHBP	hyaluronic acid binding protein 2	protein-coding	0.025000	0.532338	
mm_36675.1	chr4	96348509	96348709	-	1	NA	NA	NA	71	NM_001004141	100066	Mm.26915	NM_001004141	ENSMUSG00000066097	Cyp2j11	AI314783|Cyp2j11-ps	cytochrome P450, family 2, subfamily j, polypeptide 11	protein-coding	0.005000	0.497512	
mm_91280.1	chr10	24711814	24712014	-	1	NA	NA	NA	245	NM_001308327	18605	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	0.125000	0.726368	
mm_96714.1	chr11	69664077	69664277	+	1	NA	NA	NA	1134	NR_035455	100316840		NR_035455	ENSMUSG00000088752	Mir1934	mir-1934|mmu-mir-1934	microRNA 1934	ncRNA	0.015000	0.432836	
mm_142285.1	chr17	40232492	40232692	-	1	NA	NA	NA	9666	NM_009639	11572	Mm.14138	NM_009639	ENSMUSG00000025433	Crisp3	Aeg2|CRISP-3|CRS3|SGP28	cysteine-rich secretory protein 3	protein-coding	0.005000	0.353234	71(CTCTATAAATGA,-,0.00)
mm_58599.1	chr7	5039187	5039387	+	1	NA	NA	NA	-841	NM_001039532	654801	Mm.333548	NM_001039532	ENSMUSG00000043290	Zfp784	C730049F21Rik|Znf784	zinc finger protein 784	protein-coding	0.005000	0.358209	
mm_22649.1	chr3	14869150	14869350	+	1	NA	NA	NA	5712	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.015000	0.393035	
mm_77694.1	chr8	126589453	126589653	-	1	NA	NA	NA	3883	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.005000	0.318408	
mm_155505.1	chrX	73787066	73787266	+	1	NA	NA	NA	23	NM_009279	20832	Mm.831	NM_009279	ENSMUSG00000002014	Ssr4	AW743063|C78062|Trap	signal sequence receptor, delta	protein-coding	0.115000	0.661692	
mm_258.1	chr1	20682756	20682956	+	1	NA	NA	NA	87	NR_029902	723817		NR_029902	ENSMUSG00000065480	Mir133b	Mirn133b|mir-133b	microRNA 133b	ncRNA	0.010000	0.502488	
mm_5855.1	chr1	53352577	53352777	-	1	NA	NA	NA	75	NM_001290984	70396	Mm.285783	NM_133728	ENSMUSG00000026095	Asnsd1	2210409M21Rik	asparagine synthetase domain containing 1	protein-coding	0.130000	0.721393	
mm_121886.1	chr14	21740334	21740534	-	1	NA	NA	NA	2445	NM_013849	27389	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.020000	0.542289	
mm_138065.1	chr17	33931266	33931466	+	1	NA	NA	NA	1472	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.035000	0.577114	
mm_147289.1	chr18	39489798	39489998	-	1	NA	NA	NA	-2653	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.175000	0.810945	
mm_22555.1	chr3	9658275	9658475	+	1	NA	NA	NA	-48290	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.005000	0.492537	-54(GATCATAAAAGG,-,0.00)
mm_158276.1	chrX	111463061	111463261	-	1	NA	NA	NA	74798	NM_025949	67071	Mm.37617	NM_025949	ENSMUSG00000025665	Rps6ka6	2610524K04Rik|RSK4|S6K-alpha-6	ribosomal protein S6 kinase polypeptide 6	protein-coding	0.095000	0.736318	
mm_14694.1	chr2	141182799	141182999	+	1	NA	NA	NA	-511423	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.005000	0.318408	44(CCTTTTATGTTA,+,0.00)
mm_155409.1	chrX	73411011	73411211	+	1	NA	NA	NA	15	NM_009566	22754	Mm.5060	NM_009566	ENSMUSG00000031374	Zfp92	-	zinc finger protein 92	protein-coding	0.070000	0.656716	
mm_51274.1	chr6	72125338	72125538	+	1	NA	NA	NA	-2241	NR_045165	71265	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.010000	0.412935	-27(GGCCATAAAAGA,-,0.00)
mm_74432.1	chr8	3720708	3720908	-	1	NA	NA	NA	-157	NM_029465	75863	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	0.015000	0.522388	
mm_33131.1	chr4	124936958	124937158	+	1	NA	NA	NA	10	NM_177573	194268	Mm.266907	NM_177573		9930104L06Rik	-	RIKEN cDNA 9930104L06 gene	protein-coding	0.060000	0.497512	
mm_126071.1	chr15	77476946	77477146	+	1	NA	NA	NA	-1	NM_177744	245282	Mm.390820	NM_177744	ENSMUSG00000050982	Apol10a	9030421J09Rik	apolipoprotein L 10A	protein-coding	0.010000	0.472637	
mm_1547.1	chr1	72852327	72852527	+	1	NA	NA	NA	22438	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.005000	0.452736	
mm_110671.1	chr12	65073841	65074041	-	1	NA	NA	NA	-3	NM_013902	30795	Mm.28480	NM_013902	ENSMUSG00000020949	Fkbp3	25kDa|FKBP-3|FKBP25	FK506 binding protein 3	protein-coding	0.090000	0.676617	
mm_113707.1	chr13	43398289	43398489	+	1	NA	NA	NA	13	NM_023554	70078	Mm.439927	NM_023554	ENSMUSG00000063200	Nol7	2210008F15Rik|5730556I21Rik|NOP27|RARG-1	nucleolar protein 7	protein-coding	0.140000	0.706468	
mm_73555.1	chr8	108959378	108959578	+	1	NA	NA	NA	22618	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.005000	0.263682	
mm_31319.1	chr4	46138727	46138927	+	1	NA	NA	NA	316	NM_001033201	433702	Mm.389536	NM_001033201	ENSMUSG00000028330	Ncbp1	AU014645|AW538051|CBP80	nuclear cap binding protein subunit 1	protein-coding	0.135000	0.706468	
mm_157522.1	chrX	50942649	50942849	-	1	NA	NA	NA	-39	NM_001190332	385354	Mm.393050	NM_001190332	ENSMUSG00000036131	Frmd7	EG665849|Gm1533	FERM domain containing 7	protein-coding	0.025000	0.542289	
mm_66445.1	chr7	44863295	44863495	-	1	NA	NA	NA	5992	NM_001290767	59047	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0.020000	0.641791	
mm_43787.1	chr5	142629507	142629707	+	1	NA	NA	NA	23	NM_178398	74781	Mm.29432	NM_178398	ENSMUSG00000029578	Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding	0.165000	0.741294	
mm_122657.1	chr14	51911456	51911656	-	1	NA	NA	NA	1932	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.025000	0.547264	
mm_81692.1	chr9	111168646	111168846	+	1	NA	NA	NA	50635	NM_001164838	71268	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.010000	0.373134	
mm_124681.1	chr15	6429671	6429871	+	1	NA	NA	NA	-15562	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.040000	0.532338	
mm_143701.1	chr17	80577298	80577498	-	1	NA	NA	NA	-13564	NM_001033443	381113	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.080000	0.661692	
mm_66292.1	chr7	38018680	38018880	-	1	NA	NA	NA	772	NM_011274	19777	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	0.040000	0.417910	
mm_35186.1	chr4	16001374	16001574	-	1	NA	NA	NA	12403	NM_145950	209212	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.000000	0.368159	
mm_163996.1	chr14	64440745	64440945	-	1	NA	NA	NA	181	NM_001253715	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.080000	0.626866	
mm_143392.1	chr17	69775910	69776110	-	1	NA	NA	NA	-193063	NM_001347412	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.015000	0.378109	
mm_1306.1	chr1	64690823	64691023	+	1	NA	NA	NA	-264	NR_038009	69941	Mm.69044	NR_038009	ENSMUSG00000087213	2810408I11Rik	-	RIKEN cDNA 2810408I11 gene	ncRNA	0.145000	0.781095	-35(CCTTTTAAATAA,+,0.00)
mm_170925.1	chr2	39005061	39005261	-	1	NA	NA	NA	-30	NM_025592	66489	Mm.345333	NM_025592	ENSMUSG00000062997	Rpl35	2410039E09Rik	ribosomal protein L35	protein-coding	0.115000	0.686567	
mm_41323.1	chr5	90472434	90472634	+	1	NA	NA	NA	11664	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.492537	
mm_112394.1	chr12	119238526	119238726	-	1	NA	NA	NA	-350	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.050000	0.641791	
mm_32187.1	chr4	101068989	101069189	+	1	NA	NA	NA	51	NM_183024	242570	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.175000	0.815920	
mm_131876.1	chr16	23192058	23192258	+	1	NA	NA	NA	-32582	NM_145933	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.010000	0.472637	
mm_149806.1	chr19	23758763	23758963	+	1	NA	NA	NA	-13	NM_177034	319924	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.180000	0.830846	
mm_51649.1	chr6	86028724	86028924	+	1	NA	NA	NA	143	NM_001271860	11519	Mm.104155	NM_013458	ENSMUSG00000030000	Add2	2900072M03Rik|add97	adducin 2 (beta)	protein-coding	0.080000	0.656716	
mm_163352.1	chr12	21496373	21496573	+	1	NA	NA	NA	-79037	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.015000	0.502488	
mm_110799.1	chr12	72212066	72212266	-	1	NA	NA	NA	23580	NR_104446	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.025000	0.492537	
mm_136107.1	chr16	85173638	85173838	-	1	NA	NA	NA	-31	NM_001198826	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.135000	0.756219	
mm_139679.1	chr17	57414959	57415159	+	1	NA	NA	NA	56373	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.402985	
mm_88805.1	chr10	80755118	80755318	+	1	NA	NA	NA	12	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.120000	0.741294	
mm_70191.1	chr7	143784201	143784401	-	1	NA	NA	NA	199	NM_175534	244238	Mm.183561	NM_175534	ENSMUSG00000048965	Mrgpre	C130069N09Rik|Ebrt3|Mgrf|MrgE	MAS-related GPR, member E	protein-coding	0.045000	0.636816	
mm_150774.1	chr19	44294139	44294339	+	1	NA	NA	NA	563	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.045000	0.502488	
mm_40992.1	chr5	77283873	77284073	+	1	NA	NA	NA	11216	NR_039557	100628577		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.005000	0.353234	
mm_166512.1	chr6	12749088	12749288	-	1	NA	NA	NA	65	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding	0.100000	0.726368	
mm_83461.1	chr9	45262957	45263157	-	1	NA	NA	NA	3650	NR_106054	102466803		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.000000	0.502488	
mm_109132.1	chr12	105862648	105862848	+	1	NA	NA	NA	78051	NM_001347440	18789	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0.060000	0.597015	
mm_35561.1	chr4	41569555	41569755	-	1	NA	NA	NA	-128	NM_027993	71901	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	0.090000	0.681592	
mm_143846.1	chr17	84137102	84137302	-	1	NA	NA	NA	50745	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.015000	0.537313	
mm_19273.1	chr2	85157691	85157891	-	1	NA	NA	NA	21431	NM_011784	23796	Mm.29368	NM_011784	ENSMUSG00000044338	Aplnr	APJ|Agtrl1|msr/apj	apelin receptor	protein-coding	0.000000	0.383085	29(TTCTTTAAAAGC,-,0.00),30(TCTTTAAAAGCC,+,0.00)
mm_89781.1	chr10	101681581	101681781	+	1	NA	NA	NA	194	NM_001205098	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.015000	0.472637	
mm_116326.1	chr13	37994048	37994248	-	1	NA	NA	NA	42	NM_025965	107513	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0.130000	0.716418	
mm_171666.1	chr4	46517395	46517595	+	1	NA	NA	NA	18646	NM_029077	74735	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	0.055000	0.537313	-31(CTCCTTAAGAGG,-,0.00)
mm_82006.1	chr9	121710273	121710473	+	1	NA	NA	NA	-16	NM_026794	26901	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	0.100000	0.611940	
mm_32953.1	chr4	119637595	119637795	+	1	NA	NA	NA	-37	NM_008190	14915	Mm.2614	NM_008190	ENSMUSG00000023247	Guca2a	Guca2	guanylate cyclase activator 2a (guanylin)	protein-coding	0.000000	0.552239	-14(CTCTTTAAAAGC,-,0.00),-13(TCTTTAAAAGCC,+,0.00)
mm_61278.1	chr7	66743597	66743797	+	1	NA	NA	NA	193	NM_001164201	545975	Mm.380104	NM_001164201	ENSMUSG00000030510	Cers3	4930550L11Rik|Gm488|Lass3|T3L	ceramide synthase 3	protein-coding	0.025000	0.512438	
mm_46170.1	chr5	96739575	96739775	-	1	NA	NA	NA	-53710	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.005000	0.402985	
mm_116392.1	chr13	41194716	41194916	-	1	NA	NA	NA	25346	NM_001311121	54326	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0.030000	0.502488	
mm_165027.1	chr19	32757392	32757592	+	1	NA	NA	NA	-85	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.145000	0.800995	
mm_98431.1	chr11	94742031	94742231	+	1	NA	NA	NA	19051	NM_001105561	217122	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086|OTTMUSG00000002043	predicted gene 11545	protein-coding	0.035000	0.601990	
mm_113628.1	chr13	41800677	41800877	+	1	NA	NA	NA	46711	NM_175417	109254	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.005000	0.442786	
mm_31759.1	chr4	63381248	63381448	+	1	NA	NA	NA	16892	NM_001305432	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.025000	0.512438	61(TCCTTTAAACAC,+,0.00)
mm_64153.1	chr7	141328123	141328323	+	1	NA	NA	NA	93	NM_027797	71448	Mm.248960	NM_027797	ENSMUSG00000025505	Tmem80	5530601I19Rik	transmembrane protein 80	protein-coding	0.130000	0.711443	
mm_173249.1	chrX	91852177	91852377	+	1	NA	NA	NA	-69301	NM_028847	74271	Mm.141337	NM_028847	ENSMUSG00000061392	Mageb5	1700056A17Rik|mMage-b5	melanoma antigen, family B, 5	protein-coding	0.060000	0.532338	-31(CTCCTTAAGAGG,-,0.00)
mm_146628.1	chr18	10181980	10182180	-	1	NA	NA	NA	-288	NM_009071	19877	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.100000	0.686567	
mm_31113.1	chr4	42926285	42926485	+	1	NA	NA	NA	9134	NM_172690	230085	Mm.240965	NM_172690	ENSMUSG00000036062	Phf24	GINIP|N28178	PHD finger protein 24	protein-coding	0.000000	0.388060	68(CCTTAAAAATAC,+,0.00)
mm_29855.1	chr3	130041098	130041298	-	1	NA	NA	NA	19709	NM_207209	99683	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.025000	0.537313	
mm_69200.1	chr7	127375942	127376142	-	1	NA	NA	NA	8	NM_175560	269997	Mm.221270	NM_175560	ENSMUSG00000054381	Zfp747	6430604K15Rik	zinc finger protein 747	protein-coding	0.050000	0.517413	
mm_117502.1	chr13	78200086	78200286	-	1	NA	NA	NA	-1313	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.010000	0.482587	
mm_27621.1	chr3	59343989	59344189	-	1	NA	NA	NA	167	NM_001162884	242050	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.045000	0.467662	
mm_45808.1	chr5	87669449	87669649	-	1	NA	NA	NA	3341	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.343284	
mm_53208.1	chr6	125690557	125690757	+	1	NA	NA	NA	238	NM_153589	243634	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.045000	0.651741	
mm_96297.1	chr11	63133075	63133275	+	1	NA	NA	NA	372	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.065000	0.661692	
mm_101432.1	chr11	30099371	30099571	-	1	NA	NA	NA	-73438	NM_146016	237711	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0.015000	0.412935	64(GCTTTTAAATCT,+,0.00)
mm_22653.1	chr3	14870052	14870252	+	1	NA	NA	NA	6614	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.035000	0.557214	
mm_124895.1	chr15	10358435	10358635	+	1	NA	NA	NA	2	NM_001310735	268782	Mm.482244	NM_001031851	ENSMUSG00000089678	Agxt2	AI303810|AI663818	alanine-glyoxylate aminotransferase 2	protein-coding	0.010000	0.482587	-82(CCATTTATAGTC,+,0.00)
mm_53450.1	chr6	134605671	134605871	+	1	NA	NA	NA	26717	NM_026345	67729	Mm.57648	NM_026345	ENSMUSG00000032718	Mansc1	9130403P13Rik	MANSC domain containing 1	protein-coding	0.025000	0.552239	-17(GCCTTAATAGAG,+,0.00)
mm_140190.1	chr17	83312632	83312832	+	1	NA	NA	NA	-38199	NM_001114361	78798	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0.030000	0.572139	
mm_155511.1	chrX	74127366	74127566	+	1	NA	NA	NA	0	NM_008106	14539	Mm.284825	NM_008106	ENSMUSG00000031394	Opn1mw	Gcp	opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan)	protein-coding	0.000000	0.502488	-71(GGGCCTTTAAGG,-,0.00)
mm_94649.1	chr11	17051513	17051713	+	1	NA	NA	NA	-321	NM_029861	380686	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	0.010000	0.502488	
mm_88243.1	chr10	72654761	72654961	+	1	NA	NA	NA	15	NM_001293683	52696	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	0.100000	0.562189	-33(TCATTTAAAGTC,+,0.00)
mm_147949.1	chr18	66503961	66504161	-	1	NA	NA	NA	-117	NR_040528	100503565	Mm.98256	NR_040528		Gm9926	ENSMUSG00000053891	predicted gene 9926	ncRNA	0.040000	0.497512	
mm_40634.1	chr5	64830366	64830566	+	1	NA	NA	NA	26943	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.000000	0.348259	
mm_134936.1	chr16	31143707	31143907	-	1	NA	NA	NA	57431	NM_030138	78618	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.000000	0.318408	
mm_87930.1	chr10	62602281	62602481	+	1	NA	NA	NA	-83	NM_019553	56200	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0.120000	0.646766	
mm_138619.1	chr17	35823465	35823665	+	1	NA	NA	NA	208	NM_008027	14251	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	0.055000	0.641791	
mm_145503.1	chr18	60391391	60391591	+	1	NA	NA	NA	15462	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.393035	88(GTTTTTAAACTG,+,0.00)
mm_106601.1	chr11	120731798	120731998	-	1	NA	NA	NA	123	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.015000	0.567164	
mm_58097.1	chr6	137537670	137537870	-	1	NA	NA	NA	-17875	NM_001271589	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.015000	0.368159	
mm_895.1	chr1	53297052	53297252	+	1	NA	NA	NA	57	NM_145517	227102	Mm.212846	NM_145517	ENSMUSG00000026097	Ormdl1	C730042F17Rik	ORM1-like 1 (S. cerevisiae)	protein-coding	0.065000	0.656716	
mm_10080.1	chr1	195131462	195131662	-	1	NA	NA	NA	8	NM_013499	12946	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	0.015000	0.457711	-53(ATTTTTAAAAGG,-,0.00)
mm_157484.1	chrX	48208529	48208729	-	1	NA	NA	NA	73	NM_172465	208884	Mm.207367	NM_172465	ENSMUSG00000036985	Zdhhc9	6430508G22|9530098M12Rik	zinc finger, DHHC domain containing 9	protein-coding	0.060000	0.626866	
mm_66914.1	chr7	60005026	60005226	-	1	NA	NA	NA	30	NM_013670	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding	0.065000	0.597015	
mm_48017.1	chr5	136170585	136170785	-	1	NA	NA	NA	-29	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.110000	0.721393	
mm_145342.1	chr18	56469414	56469614	+	1	NA	NA	NA	37382	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.020000	0.522388	
mm_4621.1	chr1	178828008	178828208	+	1	NA	NA	NA	298983	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.005000	0.388060	
mm_22594.1	chr3	13781648	13781848	+	1	NA	NA	NA	-128883	NR_040598	75203	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	0.005000	0.288557	
mm_157329.1	chrX	23361595	23361795	-	1	NA	NA	NA	3387	NM_026167	67455	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	0.015000	0.532338	
mm_137657.1	chr17	28627367	28627567	+	1	NA	NA	NA	-5013	NM_016795	20815	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	0.005000	0.462687	
mm_115762.1	chr13	19193505	19193705	-	1	NA	NA	NA	202208	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.472637	
mm_9297.1	chr1	171637262	171637462	-	1	NA	NA	NA	4538	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.020000	0.497512	
mm_119271.1	chr14	34091711	34091911	+	1	NA	NA	NA	5832	NM_013473	11752	Mm.3267	NM_013473	ENSMUSG00000021950	Anxa8	AI466995|Anx8	annexin A8	protein-coding	0.025000	0.532338	
mm_139049.1	chr17	46253920	46254120	+	1	NA	NA	NA	-145	NM_001111142	224813	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0.120000	0.766169	
mm_131496.1	chr16	17336144	17336344	+	1	NA	NA	NA	4873	NM_001331047	15160	Mm.6609	NM_008223	ENSMUSG00000022766	Serpind1	AA985900|AI303446|HC-II|HCII|Hcf2	serine (or cysteine) peptidase inhibitor, clade D, member 1	protein-coding	0.000000	0.447761	
mm_121273.1	chr14	103513253	103513453	+	1	NA	NA	NA	12	NM_022886	64929	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.040000	0.572139	
mm_29194.1	chr3	106760499	106760699	-	1	NA	NA	NA	29550	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.000000	0.333333	
mm_31199.1	chr4	43669209	43669409	+	1	NA	NA	NA	338	NM_001085508	242409	Mm.171489	NM_001085508	ENSMUSG00000078716	Tmem8b	4930500O05Rik	transmembrane protein 8B	protein-coding	0.135000	0.771144	
mm_98054.1	chr11	85821786	85821986	+	1	NA	NA	NA	10502	NR_077059	69909	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.030000	0.601990	
mm_23237.1	chr3	51210193	51210393	+	1	NA	NA	NA	-14154	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.000000	0.522388	
mm_159624.1	chr4	135573703	135573903	-	1	NA	NA	NA	-183	NM_001013756	230824	Mm.331972	NM_001013756	ENSMUSG00000037188	Grhl3	AI561912|Get1|Som|Tfcp2l4|ct	grainyhead-like 3 (Drosophila)	protein-coding	0.030000	0.532338	
mm_150672.1	chr19	42051708	42051908	+	1	NA	NA	NA	-420	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	0.010000	0.467662	
mm_111176.1	chr12	83819845	83820045	-	1	NA	NA	NA	22413	NM_001272055	18222	Mm.4390	NM_010949	ENSMUSG00000021224	Numb	Nb	numb homolog (Drosophila)	protein-coding	0.005000	0.368159	9(ATCTTTTAAAGG,-,0.00),10(TCTTTTAAAGGT,+,0.00),11(CTTTTAAAGGTC,+,0.00)
mm_64163.1	chr7	141392122	141392322	+	1	NA	NA	NA	62	NM_011528	21351	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0.085000	0.597015	
mm_67766.1	chr7	92876399	92876599	-	1	NA	NA	NA	1246	NM_028243	72461	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.015000	0.328358	
mm_70702.1	chr8	15036726	15036926	+	1	NA	NA	NA	9252	NR_037972	434285	Mm.334425	NM_001007591	ENSMUSG00000049008	BB014433	-	expressed sequence BB014433	ncRNA	0.030000	0.592040	
mm_5702.1	chr1	43310804	43311004	-	1	NA	NA	NA	-114143	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.025000	0.487562	
mm_5806.1	chr1	52232919	52233119	-	1	NA	NA	NA	213	NM_001081081	14660	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.130000	0.706468	65(GCTCTTAAGGCC,+,0.00)
mm_97932.1	chr11	83648134	83648334	+	1	NA	NA	NA	1144	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.025000	0.552239	
mm_113193.1	chr13	24943094	24943294	+	1	NA	NA	NA	42	NM_008156	14756	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0.030000	0.487562	-78(CACCATAAAAGC,-,0.00)
mm_83696.1	chr9	50617159	50617359	-	1	NA	NA	NA	-62	NM_028300	72614	Mm.147232	NM_028300	ENSMUSG00000000167	Pih1d2	2700059L22Rik	PIH1 domain containing 2	protein-coding	0.120000	0.691542	
mm_127105.1	chr15	97842637	97842837	+	1	NA	NA	NA	1765	NM_001204279	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.015000	0.497512	
mm_76395.1	chr8	84844339	84844539	-	1	NA	NA	NA	2492	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.005000	0.532338	
mm_37233.1	chr4	118012391	118012591	-	1	NA	NA	NA	-82728	NM_001284192	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.005000	0.407960	
mm_83505.1	chr9	45955185	45955385	-	1	NA	NA	NA	-36	NM_001289668	214597	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	0.125000	0.676617	-33(CCCTTTAAATCC,+,0.00),71(CGCCCTTAAAGG,-,0.00),72(GCCCTTAAAGGG,-,0.00),73(CCCTTAAAGGGC,+,0.00),74(CCTTAAAGGGCC,+,0.00)
mm_131592.1	chr16	18812211	18812411	+	1	NA	NA	NA	17	NM_011672	22230	Mm.237594	NM_011672	ENSMUSG00000005262	Ufd1l	Ufd1	ubiquitin fusion degradation 1 like	protein-coding	0.055000	0.557214	
mm_168011.1	chrY	20697288	20697488	+	1	NA	NA	NA	-397943	NM_009220	20611	Mm.347498	NM_009220	ENSMUSG00000095267	Ssty1	Smy|Ssty	spermiogenesis specific transcript on the Y 1	protein-coding	0.015000	0.432836	
mm_25630.1	chr3	119184028	119184228	+	1	NA	NA	NA	599260	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.005000	0.447761	
mm_58339.1	chr6	146954315	146954515	-	1	NA	NA	NA	6	NM_001164236	73344	Mm.391543	NM_028509	ENSMUSG00000040163	1700034J05Rik	-	RIKEN cDNA 1700034J05 gene	protein-coding	0.005000	0.472637	
mm_144095.1	chr18	3338113	3338313	+	1	NA	NA	NA	-624	NM_001110852	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.030000	0.388060	
mm_7808.1	chr1	131527244	131527444	-	1	NA	NA	NA	17	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.075000	0.626866	
mm_42528.1	chr5	115631818	115632018	+	1	NA	NA	NA	-69	NM_198163	77407	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	0.125000	0.761194	
mm_42769.1	chr5	121232913	121233113	+	1	NA	NA	NA	12794	NM_181421	269700	Mm.184589	NM_181421	ENSMUSG00000042744	Gm15800	A130010L24|AU042671|BC019639|EG545802|OTTMUSG00000026283|mKIAA0614	predicted gene 15800	protein-coding	0.005000	0.417910	-6(TTTTTTAAAGAG,+,0.00)
mm_81308.1	chr9	108347864	108348064	+	1	NA	NA	NA	133	NM_011678	22258	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0.130000	0.736318	
mm_43275.1	chr5	130507994	130508194	+	1	NA	NA	NA	59302	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.000000	0.467662	
mm_122555.1	chr14	49066246	49066446	-	1	NA	NA	NA	-149	NM_144535	74385	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	0.140000	0.761194	
mm_131559.1	chr16	18066378	18066578	+	1	NA	NA	NA	75	NM_001289813	13353	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0.145000	0.731343	
mm_100913.1	chr11	6267637	6267837	-	1	NA	NA	NA	-8	NM_026538	52513	Mm.29810	NM_026538	ENSMUSG00000004393	Ddx56	2600001H07Rik|D11Ertd619e|Noh61	DEAD (Asp-Glu-Ala-Asp) box polypeptide 56	protein-coding	0.055000	0.582090	
mm_75701.1	chr8	68556935	68557135	-	1	NA	NA	NA	178111	NM_001252623	234356	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	0.040000	0.542289	
mm_44885.1	chr5	34654387	34654587	-	1	NA	NA	NA	5661	NM_029278	75416	Mm.40292	NM_029278	ENSMUSG00000036693	Nop14	2610033H07Rik|Nol14	NOP14 nucleolar protein	protein-coding	0.010000	0.512438	
mm_52351.1	chr6	112459500	112459700	+	1	NA	NA	NA	95	NM_007617	12391	Mm.3924	NM_007617	ENSMUSG00000062694	Cav3	AI385751|Cav-3|M-cav	caveolin 3	protein-coding	0.030000	0.592040	-33(CCCCCTTTAAGG,-,0.00),-31(CCCTTTAAGGAG,+,0.00),-30(CCTTTAAGGAGC,+,0.00)
mm_139657.1	chr17	57402732	57402932	+	1	NA	NA	NA	44146	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.378109	
mm_138678.1	chr17	35916483	35916683	+	1	NA	NA	NA	-143	NM_001347380	66973	Mm.29484	NM_025878	ENSMUSG00000024436	Mrps18b	2400002C15Rik	mitochondrial ribosomal protein S18B	protein-coding	0.075000	0.522388	
mm_126639.1	chr15	83596937	83597137	+	1	NA	NA	NA	-1880	NM_183017	223723	Mm.46778	NM_183017	ENSMUSG00000016757	Ttll12	BC055368|D430005B17	tubulin tyrosine ligase-like family, member 12	protein-coding	0.005000	0.378109	
mm_11493.1	chr2	32493439	32493639	+	1	NA	NA	NA	-41820	NM_153560	98952	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.040000	0.512438	
mm_156624.1	chrX	155172347	155172547	+	1	NA	NA	NA	-24598	NM_001081671	73347	Mm.63848	NM_001081671	ENSMUSG00000057402	Cldn34b2	1700042B14Rik	claudin 34B2	protein-coding	0.000000	0.442786	
mm_30421.1	chr3	152340283	152340483	-	1	NA	NA	NA	24	NM_001162375	215708	Mm.135018	NM_174868	ENSMUSG00000054942	Miga1	A930038D06|AI852168|C030011O14Rik|Fam73a|Mita1	mitoguardin 1	protein-coding	0.120000	0.731343	
mm_154632.1	chrX	7762699	7762899	+	1	NA	NA	NA	138	NM_172472	209446	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	0.085000	0.656716	
mm_138976.1	chr17	45433500	45433700	+	1	NA	NA	NA	107	NM_152810	71702	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0.105000	0.631841	
mm_147258.1	chr18	38635811	38636011	-	1	NA	NA	NA	-34643	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.025000	0.457711	48(CGCTATTTAAAC,-,0.00)
mm_113490.1	chr13	37378604	37378804	+	1	NA	NA	NA	33359	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.000000	0.383085	
mm_28881.1	chr3	97824401	97824601	-	1	NA	NA	NA	-56487	NM_178080	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.060000	0.616915	
mm_83462.1	chr9	45262985	45263185	-	1	NA	NA	NA	3622	NR_106054	102466803		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.000000	0.527363	
mm_116445.1	chr13	43154699	43154899	-	1	NA	NA	NA	16702	NM_001252639	67046	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	0.040000	0.512438	
mm_163578.1	chr13	33139356	33139556	-	1	NA	NA	NA	18895	NM_011453	20707	Mm.219429	NM_011453	ENSMUSG00000021404	Serpinb9c	3830421J05Rik|Nk9|Spi11	serine (or cysteine) peptidase inhibitor, clade B, member 9c	protein-coding	0.010000	0.442786	
mm_40678.1	chr5	65537199	65537399	+	1	NA	NA	NA	54	NM_001310619	53323	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.125000	0.701493	
mm_116414.1	chr13	41487226	41487426	-	1	NA	NA	NA	34	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.035000	0.542289	
mm_158745.1	chrX	164373322	164373522	-	1	NA	NA	NA	-100	NM_001308489	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.005000	0.402985	-35(TGCTTTATAAGG,-,0.00),-33(CTTTATAAGGAG,+,0.00)
mm_112013.1	chr12	110987007	110987207	-	1	NA	NA	NA	-7291	NR_036598	77878	Mm.293198	NR_036598		6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	0.015000	0.502488	-91(GCCCATTTATGG,-,0.00),-89(CCATTTATGGAC,+,0.00)
mm_104132.1	chr11	86828366	86828566	-	1	NA	NA	NA	-20806	NM_026191	67487	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.020000	0.482587	
mm_151929.1	chr19	5800132	5800332	-	1	NA	NA	NA	2440	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.025000	0.502488	
mm_45662.1	chr5	77140188	77140388	-	1	NA	NA	NA	-25165	NM_175606	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.005000	0.577114	
mm_8039.1	chr1	135258357	135258557	-	1	NA	NA	NA	15	NM_001163131	13710	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0.055000	0.621891	-33(CTATTTAGAGCG,+,0.00)
mm_117076.1	chr13	59556750	59556950	-	1	NA	NA	NA	72	NM_001284219	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.100000	0.671642	
mm_53510.1	chr6	135382415	135382615	+	1	NA	NA	NA	15022	NM_001288627	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.000000	0.407960	-73(CTCTTTTAAAAC,-,0.00),-71(CTTTTAAAACAG,+,0.00),40(CTGCCTTAAAGG,-,0.00),41(TGCCTTAAAGGG,-,0.00),42(GCCTTAAAGGGC,+,0.00),43(CCTTAAAGGGCT,+,0.00)
mm_121714.1	chr14	16243227	16243427	-	1	NA	NA	NA	-5987	NM_021504	59007	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	0.090000	0.656716	
mm_65497.1	chr7	25718708	25718908	-	1	NA	NA	NA	245	NM_028771	52132	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.040000	0.542289	
mm_53031.1	chr6	124512528	124512728	+	1	NA	NA	NA	7	NM_023143	50909	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	0.015000	0.497512	
mm_113218.1	chr13	26855106	26855306	+	1	NA	NA	NA	-85041	NM_008232	15192	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	hepatoma derived growth factor-like 1	protein-coding	0.020000	0.462687	
mm_45349.1	chr5	65858158	65858358	-	1	NA	NA	NA	-5311	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.015000	0.597015	
mm_166642.1	chr6	83537060	83537260	-	1	NA	NA	NA	-909	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.010000	0.517413	
mm_120099.1	chr14	58072122	58072322	+	1	NA	NA	NA	-464	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.180000	0.800995	
mm_136706.1	chr17	7925775	7925975	+	1	NA	NA	NA	-125	NM_145968	72536	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik	T cell activation Rho GTPase activating protein	protein-coding	0.025000	0.522388	-32(TGCCCTAAAAGG,-,0.00)
mm_152774.1	chr19	21170832	21171032	-	1	NA	NA	NA	66222	NR_126458	75354	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.005000	0.497512	
mm_168836.1	chr12	23117763	23117963	+	1	NA	NA	NA	-107620	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA	0.005000	0.412935	
mm_166771.1	chr6	136120210	136120410	+	1	NA	NA	NA	53201	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.045000	0.452736	
mm_152196.1	chr19	7483121	7483321	-	1	NA	NA	NA	70	NM_001271486	20168	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0.120000	0.666667	
mm_124353.1	chr14	104522561	104522761	-	1	NA	NA	NA	5	NM_026047	72486	Mm.291811	NM_026047	ENSMUSG00000022120	Rnf219	2610206B13Rik|2810449K13Rik|AI451544	ring finger protein 219	protein-coding	0.125000	0.681592	
mm_91713.1	chr10	44170227	44170427	-	1	NA	NA	NA	-120	NR_001582	70365	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	0.045000	0.552239	
mm_162732.1	chr10	49831927	49832127	+	1	NA	NA	NA	-43273	NM_001111268	14806	Mm.332838	NM_010349	ENSMUSG00000056073	Grik2	AW124492|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.000000	0.383085	-26(CCCTATATAGAA,+,0.00)
mm_57838.1	chr6	129465420	129465620	-	1	NA	NA	NA	7259	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.025000	0.452736	-24(CCGTATTAATGC,-,0.00)
mm_55741.1	chr6	77526874	77527074	-	1	NA	NA	NA	-144499	NR_045141	70753	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	0.000000	0.363184	
mm_7401.1	chr1	119053259	119053459	-	1	NA	NA	NA	260	NM_001081125	14633	Mm.273292	NM_001081125	ENSMUSG00000048402	Gli2	-	GLI-Kruppel family member GLI2	protein-coding	0.050000	0.646766	
mm_44313.1	chr5	9300006	9300206	-	1	NA	NA	NA	33913	NM_172706	231014	Mm.130063	NM_172706	ENSMUSG00000056004	9330182L06Rik	Eig121l	RIKEN cDNA 9330182L06 gene	protein-coding	0.020000	0.427861	
mm_46977.1	chr5	115267080	115267280	-	1	NA	NA	NA	5715	NM_001302448	50849	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	0.010000	0.373134	
mm_132705.1	chr16	43364021	43364221	+	1	NA	NA	NA	56075	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.010000	0.477612	
mm_141393.1	chr17	29189016	29189216	-	1	NA	NA	NA	48674	NM_153166	240058	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	0.025000	0.611940	
mm_74701.1	chr8	16670064	16670264	-	1	NA	NA	NA	-501326	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0.010000	0.333333	
mm_49187.1	chr6	15185388	15185588	+	1	NA	NA	NA	-18	NM_212435	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.020000	0.422886	
mm_79386.1	chr9	54772813	54773013	+	1	NA	NA	NA	8165	NM_013496	12903	Mm.34797	NM_013496	ENSMUSG00000032291	Crabp1	AI326249|CRABP-I|Crabp-1|CrabpI|Rbp-5	cellular retinoic acid binding protein I	protein-coding	0.030000	0.537313	
mm_101564.1	chr11	34098474	34098674	-	1	NA	NA	NA	51373	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.030000	0.477612	
mm_6199.1	chr1	65186303	65186503	-	1	NA	NA	NA	76	NM_001111320	15926	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.060000	0.552239	
mm_122690.1	chr14	52020572	52020772	-	1	NA	NA	NA	61	NM_001253696	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.025000	0.532338	
mm_15382.1	chr2	156540035	156540235	+	1	NA	NA	NA	-7441	NM_026661	68295	Mm.253648	NM_026661	ENSMUSG00000027628	Aar2	0610011L14Rik	AAR2 splicing factor homolog	protein-coding	0.020000	0.452736	
mm_22198.1	chr2	173305037	173305237	-	1	NA	NA	NA	-28604	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.040000	0.557214	
mm_55880.1	chr6	83526789	83526989	-	1	NA	NA	NA	9362	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.020000	0.517413	
mm_173177.1	chrX	50635138	50635338	-	1	NA	NA	NA	83	NR_015505	103012	Mm.482523	NR_015505	ENSMUSG00000085396	Firre	5830467J12Rik|6720401G13Rik|AW048145	functional intergenic repeating RNA element	ncRNA	0.055000	0.626866	51(CCTTTTATGTAG,+,0.00)
mm_76576.1	chr8	89006565	89006765	-	1	NA	NA	NA	-18070	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.115000	0.701493	
mm_115428.1	chr13	117235924	117236124	+	1	NA	NA	NA	15451	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.020000	0.502488	
mm_156648.1	chrX	157702395	157702595	+	1	NA	NA	NA	3522	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.030000	0.487562	
mm_40781.1	chr5	67306896	67307096	+	1	NA	NA	NA	41	NM_001310629	109108	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	0.125000	0.731343	
mm_15509.1	chr2	158258106	158258306	+	1	NA	NA	NA	-35	NM_177850	329547	Mm.260883	NM_177850	ENSMUSG00000052922	Bpi	9230105K17Rik|Bpifd1	bactericidal permeablility increasing protein	protein-coding	0.025000	0.636816	
mm_3567.1	chr1	150438991	150439191	+	1	NA	NA	NA	27074	NM_021400	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.005000	0.328358	-20(AACTCTTAAAGG,-,0.00)
mm_97222.1	chr11	75642474	75642674	+	1	NA	NA	NA	-8935	NM_008659	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.005000	0.517413	
mm_6685.1	chr1	80664198	80664398	-	1	NA	NA	NA	1054	NM_001285927	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.000000	0.283582	-33(CCTTATAGATAC,+,0.00)
mm_154856.1	chrX	20617687	20617887	+	1	NA	NA	NA	28	NM_145627	236732	Mm.279194	NM_145627	ENSMUSG00000031060	Rbm10	E430039K10Rik	RNA binding motif protein 10	protein-coding	0.060000	0.606965	
mm_116757.1	chr13	52530734	52530934	-	1	NA	NA	NA	2	NM_001024474	68203	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0.060000	0.611940	
mm_6696.1	chr1	80755951	80756151	-	1	NA	NA	NA	2502	NM_175291	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.005000	0.452736	
mm_24632.1	chr3	94310063	94310263	+	1	NA	NA	NA	31	NM_029431	75778	Mm.45092	NM_029431	ENSMUSG00000028145	Them4	2700077M13Rik|4921507I02Rik	thioesterase superfamily member 4	protein-coding	0.090000	0.661692	
mm_18444.1	chr2	60902737	60902937	-	1	NA	NA	NA	-21399	NM_001141931	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.015000	0.353234	
mm_83447.1	chr9	45009741	45009941	-	1	NA	NA	NA	-251	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.020000	0.562189	
mm_169151.1	chr13	63003472	63003672	-	1	NA	NA	NA	38679	NM_001289924	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.025000	0.492537	
mm_40316.1	chr5	43869694	43869894	+	1	NA	NA	NA	985	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.005000	0.323383	
mm_123623.1	chr14	68121051	68121251	-	1	NA	NA	NA	-2601	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.030000	0.497512	
mm_166743.1	chr6	124817902	124818102	-	1	NA	NA	NA	-3706	NM_009415	21991	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.035000	0.537313	
mm_102239.1	chr11	54973686	54973886	-	1	NA	NA	NA	-10846	NM_001271455	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.030000	0.497512	
mm_115610.1	chr13	11992019	11992219	-	1	NA	NA	NA	114826	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.005000	0.388060	73(GCTTATAGAGCC,+,0.00)
mm_4716.1	chr1	181035519	181035719	+	1	NA	NA	NA	-15618	NM_001033819	619326	Mm.355174	NM_001033819	ENSMUSG00000038768	9130409I23Rik	-	RIKEN cDNA 9130409I23 gene	protein-coding	0.000000	0.552239	
mm_136425.1	chr16	94223054	94223254	-	1	NA	NA	NA	64702	NM_139145	110948	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.015000	0.512438	
mm_55285.1	chr6	54531031	54531231	-	1	NA	NA	NA	35251	NM_027268	69938	Mm.41557	NM_027268	ENSMUSG00000019124	Scrn1	2810019K23Rik|6330535A03Rik|AI852905|SES1|mKIAA0193	secernin 1	protein-coding	0.010000	0.497512	
mm_89179.1	chr10	86344537	86344737	+	1	NA	NA	NA	44225	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.020000	0.562189	
mm_120410.1	chr14	65173966	65174166	+	1	NA	NA	NA	-75960	NM_018788	54616	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.010000	0.532338	
mm_134818.1	chr16	25517601	25517801	-	1	NA	NA	NA	-166064	NM_001127259	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.010000	0.487562	
mm_118496.1	chr14	13453845	13454045	+	1	NA	NA	NA	-13	NM_001163032	72003	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.015000	0.542289	
mm_103944.1	chr11	83850668	83850868	-	1	NA	NA	NA	-101	NM_001291268	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.030000	0.552239	-81(GGCCATATAAGA,-,0.00)
mm_105361.1	chr11	103131715	103131915	-	1	NA	NA	NA	-1524	NM_001130516	71059	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0.015000	0.383085	17(CCATTTAAAGTC,+,0.00)
mm_20093.1	chr2	120850529	120850729	-	1	NA	NA	NA	-27	NR_038349	100502700	Mm.330516	NR_038349	ENSMUSG00000087519	AV039307	-	expressed sequence AV039307	ncRNA	0.065000	0.606965	
mm_24745.1	chr3	95315192	95315392	+	1	NA	NA	NA	102	NM_029789	76893	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.125000	0.741294	
mm_5751.1	chr1	46853427	46853627	-	1	NA	NA	NA	-18	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.105000	0.616915	
mm_87102.1	chr10	33157034	33157234	+	1	NA	NA	NA	73651	NM_029726	76757	Mm.338508	NM_029726	ENSMUSG00000019787	Trdn	2310045H21Rik|EG432451|TDN	triadin	protein-coding	0.005000	0.383085	67(TCATATATAGAG,+,0.00)
mm_39787.1	chr5	30263443	30263643	+	1	NA	NA	NA	30962	NR_137634	28042	Mm.168854	NM_027652	ENSMUSG00000075703	Selenoi	4933402G07Rik|AI448296|AI452230|C79563|D5Wsu178e|Ept1|SELI|mKIAA1724	selenoprotein I	protein-coding	0.005000	0.457711	
mm_166218.1	chr5	63693844	63694044	+	1	NA	NA	NA	44841	NM_177006	319807	Mm.319487	NM_028470	ENSMUSG00000090061	Nwd2	3110047P20Rik|B830017A01Rik|Hn1-ps2|mKIAA1239	NACHT and WD repeat domain containing 2	protein-coding	0.025000	0.502488	
mm_30881.1	chr4	32240372	32240572	+	1	NA	NA	NA	-176963	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.015000	0.333333	
mm_20200.1	chr2	124711440	124711640	-	1	NA	NA	NA	57959	NM_199239	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.000000	0.422886	
mm_171058.1	chr3	10760331	10760531	+	1	NA	NA	NA	-320301	NM_001127191	74718	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0.005000	0.393035	
mm_84202.1	chr9	60649773	60649973	-	1	NA	NA	NA	37661	NM_001311095	102747	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0.025000	0.477612	
mm_21680.1	chr2	164426119	164426319	-	1	NA	NA	NA	16969	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.045000	0.582090	
mm_105579.1	chr11	106615544	106615744	-	1	NA	NA	NA	-2714	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.020000	0.517413	
mm_116416.1	chr13	41605399	41605599	-	1	NA	NA	NA	-717	NM_001163572	621976	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.060000	0.577114	
mm_13234.1	chr2	98662135	98662335	+	1	NA	NA	NA	1194578	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.020000	0.363184	
mm_30518.1	chr3	158561241	158561441	-	1	NA	NA	NA	880	NM_001291453	242274	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding	0.105000	0.761194	
mm_42211.1	chr5	112793187	112793387	+	1	NA	NA	NA	-5	NR_040675	67360	Mm.59218	NR_040675	ENSMUSG00000098230	1700095B10Rik	-	RIKEN cDNA 1700095B10 gene	ncRNA	0.015000	0.512438	
mm_145487.1	chr18	60384916	60385116	+	1	NA	NA	NA	8987	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.383085	
mm_103411.1	chr11	75454589	75454789	-	1	NA	NA	NA	28	NM_138950	192652	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0.085000	0.656716	-63(CCCTTTAGAGAC,+,0.00)
mm_87173.1	chr10	38965453	38965653	+	1	NA	NA	NA	38	NM_010681	16775	Mm.258065	NM_010681	ENSMUSG00000019846	Lama4	-	laminin, alpha 4	protein-coding	0.040000	0.621891	
mm_4150.1	chr1	171018827	171019027	+	1	NA	NA	NA	1	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.005000	0.477612	-1(GGCCCTTAAGGG,-,0.00)
mm_91409.1	chr10	31445772	31445972	-	1	NA	NA	NA	49	NM_009413	21987	Mm.439966	NM_009413	ENSMUSG00000000296	Tpd52l1	D53	tumor protein D52-like 1	protein-coding	0.110000	0.686567	
mm_128162.1	chr15	33687752	33687952	-	1	NA	NA	NA	31	NM_001085421	239364	Mm.60794	NM_001085421	ENSMUSG00000038984	Tspyl5	6330530B20|E130308C19Rik	testis-specific protein, Y-encoded-like 5	protein-coding	0.065000	0.621891	
mm_21884.1	chr2	166155071	166155271	-	1	NA	NA	NA	114	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.140000	0.736318	
mm_64463.1	chr7	142665690	142665890	+	1	NA	NA	NA	1026	NM_001315488	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.010000	0.527363	
mm_91075.1	chr10	19009602	19009802	-	1	NA	NA	NA	2261	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.015000	0.472637	-74(CCTTTTAAAAAC,+,0.00),-73(CTTTTAAAAACC,+,0.00)
mm_10280.1	chr2	9906187	9906387	+	1	NA	NA	NA	-16747	NR_040511	77682	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA	0.040000	0.532338	
mm_124617.1	chr15	3279552	3279752	+	1	NA	NA	NA	8675	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.010000	0.462687	
mm_114576.1	chr13	75089853	75090053	+	1	NA	NA	NA	-34	NM_013628	18548	Mm.1333	NM_013628	ENSMUSG00000021587	Pcsk1	Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	0.030000	0.552239	
mm_26851.1	chr3	14776165	14776365	-	1	NA	NA	NA	2195	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.015000	0.442786	
mm_111515.1	chr12	99642587	99642787	-	1	NA	NA	NA	-14713	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.015000	0.527363	
mm_82309.1	chr9	7872745	7872945	-	1	NA	NA	NA	325	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.080000	0.651741	
mm_49213.1	chr6	15727712	15727912	+	1	NA	NA	NA	7151	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.005000	0.492537	
mm_129766.1	chr15	82687597	82687797	-	1	NA	NA	NA	2361	NR_033515	627860	Mm.486636	NR_033515		Cyp2d37-ps	EG627860|Gm6800	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene	pseudo	0.005000	0.343284	
mm_48895.1	chr5	151651085	151651285	-	1	NA	NA	NA	23	NM_027009	69263	Mm.12553	NM_027009	ENSMUSG00000033970	Rfc3	2810416I22Rik|38kDa|AU022547|Recc3	replication factor C (activator 1) 3	protein-coding	0.100000	0.631841	
mm_158614.1	chrX	152644324	152644524	-	1	NA	NA	NA	124	NM_001290686	110380	Mm.40796	NM_172441	ENSMUSG00000045180	Shroom2	4832440C16|Apxl|C630003H05Rik|Shrm2	shroom family member 2	protein-coding	0.020000	0.532338	
mm_154588.1	chrX	7577409	7577609	+	1	NA	NA	NA	-2167	NM_001199347	20371	Mm.182291	NM_054039	ENSMUSG00000039521	Foxp3	JM2|scurfin|sf	forkhead box P3	protein-coding	0.005000	0.497512	
mm_159907.1	chr6	43235592	43235792	+	1	NA	NA	NA	82	NM_146370	18346	Mm.222840	NM_146370	ENSMUSG00000061210	Olfr47	IB12|MOR261-9|Olfr13	olfactory receptor 47	protein-coding	0.005000	0.462687	
mm_164994.1	chr19	14904550	14904750	+	1	NA	NA	NA	-306467	NM_001302947	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.015000	0.447761	
mm_61021.1	chr7	49484437	49484637	+	1	NA	NA	NA	152298	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.010000	0.582090	
mm_56108.1	chr6	87496604	87496804	-	1	NA	NA	NA	-377	NM_175476	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.005000	0.472637	
mm_162647.1	chr1	195131327	195131527	-	1	NA	NA	NA	143	NM_013499	12946	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	0.030000	0.487562	
mm_142530.1	chr17	46438376	46438576	-	1	NA	NA	NA	1	NM_144856	108114	Mm.387538	NM_144856	ENSMUSG00000067144	Slc22a7	NLT|OAT2	solute carrier family 22 (organic anion transporter), member 7	protein-coding	0.010000	0.562189	
mm_72684.1	chr8	84950059	84950259	+	1	NA	NA	NA	3168	NM_144929	234542	Mm.461701	NM_144929	ENSMUSG00000048617	Rtbdn	A330096I21Rik|BC022744|Rtbnd	retbindin	protein-coding	0.035000	0.557214	
mm_104084.1	chr11	86602240	86602440	-	1	NA	NA	NA	-18182	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.432836	
mm_94505.1	chr11	7199755	7199955	+	1	NA	NA	NA	2068	NM_008341	16006	Mm.21300	NM_008341	ENSMUSG00000020429	Igfbp1	-	insulin-like growth factor binding protein 1	protein-coding	0.045000	0.592040	
mm_30673.1	chr4	11156733	11156933	+	1	NA	NA	NA	392	NM_021897	60599	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.050000	0.517413	31(GCTTATTTAAGC,-,0.00)
mm_15811.1	chr2	164497873	164498073	+	1	NA	NA	NA	448	NM_133779	78928	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	0.035000	0.582090	
mm_26065.1	chr3	135839680	135839880	+	1	NA	NA	NA	489	NR_040540	71038	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	0.045000	0.507463	
mm_160985.1	chr11	104442817	104443017	-	1	NA	NA	NA	-626	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.075000	0.656716	
mm_128270.1	chr15	36793516	36793716	-	1	NA	NA	NA	922	NM_011740	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.090000	0.661692	
mm_99077.1	chr11	99388720	99388920	+	1	NA	NA	NA	544	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.045000	0.547264	
mm_104314.1	chr11	93885633	93885833	-	1	NA	NA	NA	33	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.150000	0.726368	
mm_103564.1	chr11	77880908	77881108	-	1	NA	NA	NA	12864	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding	0.010000	0.482587	
mm_36611.1	chr4	89282032	89282232	-	1	NA	NA	NA	60	NM_001040654	12578	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin-dependent kinase inhibitor 2A	protein-coding	0.070000	0.666667	
mm_126093.1	chr15	77929140	77929340	+	1	NA	NA	NA	-246	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.020000	0.532338	
mm_103531.1	chr11	77200881	77201081	-	1	NA	NA	NA	-12013	NM_176965	319634	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	0.005000	0.472637	
mm_7856.1	chr1	132417875	132418075	-	1	NA	NA	NA	522	NM_172516	213452	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	0.070000	0.641791	
mm_171807.1	chr5	129887222	129887422	-	1	NA	NA	NA	148	NM_024166	14004	Mm.30133	NM_024166	ENSMUSG00000070493	Chchd2	AL033347|Etohi6	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding	0.070000	0.522388	
mm_4294.1	chr1	171775061	171775261	+	1	NA	NA	NA	8029	NM_013730	27218	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	0.015000	0.442786	
mm_39047.1	chr4	152477406	152477606	-	1	NA	NA	NA	43	NM_001252654	16498	Mm.388924	NM_010598	ENSMUSG00000028931	Kcnab2	F5|I2rf5|Kcnb3|kv-beta-2	potassium voltage-gated channel, shaker-related subfamily, beta member 2	protein-coding	0.075000	0.631841	
mm_39871.1	chr5	31074764	31074964	+	1	NA	NA	NA	18663	NM_011773	22784	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.015000	0.507463	
mm_52222.1	chr6	103510945	103511145	+	1	NA	NA	NA	169	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.040000	0.582090	
mm_110578.1	chr12	56513852	56514052	-	1	NA	NA	NA	15468	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.020000	0.373134	
mm_27950.1	chr3	79825428	79825628	-	1	NA	NA	NA	17134	NM_027495	70652	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.015000	0.492537	
mm_33660.1	chr4	133130549	133130749	+	1	NA	NA	NA	16	NM_153423	242687	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.110000	0.701493	
mm_58374.1	chr6	148989236	148989436	-	1	NA	NA	NA	-42904	NM_019643	56306	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Tera	family with sequence similarity 60, member A	protein-coding	0.000000	0.402985	5(CCTCAAAGAGGC,+,0.00)
mm_169300.1	chr14	101982692	101982892	-	1	NA	NA	NA	142169	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.030000	0.517413	-91(CCATTAAAAGCC,+,0.00),-55(TCCTTTTTAAGA,-,0.00)
mm_162892.1	chr10	111010188	111010388	-	1	NA	NA	NA	-222	NM_172554	320150	Mm.339281	NM_172554	ENSMUSG00000035798	Zdhhc17	A230053P19Rik|BB187739|D130071N24Rik|Hip14	zinc finger, DHHC domain containing 17	protein-coding	0.150000	0.800995	
mm_162877.1	chr10	99443774	99443974	+	1	NA	NA	NA	-165297	NR_038019	100504202	Mm.403801	NR_038019		Gm20110	-	predicted gene, 20110	ncRNA	0.030000	0.472637	
mm_148517.1	chr19	4232694	4232894	+	1	NA	NA	NA	379	NR_132280	69745	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0.010000	0.552239	
mm_12517.1	chr2	72112647	72112847	+	1	NA	NA	NA	58130	NM_001204166	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.015000	0.383085	
mm_134494.1	chr16	18784211	18784411	-	1	NA	NA	NA	7464	NM_013805	12741	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	0.010000	0.417910	
mm_22876.1	chr3	29240324	29240524	+	1	NA	NA	NA	157847	NM_029412	75740	Mm.330948	NM_029412	ENSMUSG00000063600	Egfem1	6130401L20Rik|Efcab11	EGF-like and EMI domain containing 1	protein-coding	0.000000	0.467662	
mm_8565.1	chr1	155417203	155417403	-	1	NA	NA	NA	141	NM_011273	19775	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.120000	0.716418	
mm_88454.1	chr10	77556024	77556224	+	1	NA	NA	NA	-25643	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.040000	0.587065	
mm_47906.1	chr5	134945726	134945926	-	1	NA	NA	NA	1108	NM_009903	12740	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	0.025000	0.522388	
mm_36681.1	chr4	96507382	96507582	-	1	NA	NA	NA	-96	NM_001104927	665095	Mm.331717	NM_001104927	ENSMUSG00000082932	Cyp2j8	Cyp2j8-ps|OTTMUSG00000007938	cytochrome P450, family 2, subfamily j, polypeptide 8	protein-coding	0.005000	0.462687	
mm_57243.1	chr6	123283076	123283276	-	1	NA	NA	NA	6695	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.393035	-22(CTGTATAAAGAG,-,0.00)
mm_156910.1	chrX	169052797	169052997	+	1	NA	NA	NA	16286	NR_109847	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.010000	0.457711	
mm_51862.1	chr6	90486320	90486520	+	1	NA	NA	NA	23794	NM_023184	66277	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.025000	0.552239	
mm_91356.1	chr10	27990995	27991195	-	1	NA	NA	NA	-83725	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0.010000	0.437811	14(CTCCATTTAAGA,-,0.00)
mm_37931.1	chr4	132884680	132884880	-	1	NA	NA	NA	-322	NM_133887	100226	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	0.085000	0.606965	
mm_30221.1	chr3	145032784	145032984	-	1	NA	NA	NA	-108	NM_017474	23844	Mm.33483	NM_017474	ENSMUSG00000028255	Clca1	Clca2|Clca3|gob-5|gob5	chloride channel accessory 1	protein-coding	0.000000	0.378109	-44(CCATTTAGGGTC,+,0.00)
mm_14315.1	chr2	129246259	129246459	+	1	NA	NA	NA	27390	NR_045838	329513	Mm.473529	NM_177847	ENSMUSG00000056738	A730036I17Rik	-	RIKEN cDNA A730036I17 gene	ncRNA	0.005000	0.522388	
mm_123891.1	chr14	72710664	72710864	-	1	NA	NA	NA	-761	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.035000	0.467662	
mm_143972.1	chr17	87427599	87427799	-	1	NA	NA	NA	42	NM_029298	75467	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0.070000	0.611940	
mm_62713.1	chr7	110768525	110768725	+	1	NA	NA	NA	419	NM_001276301	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.110000	0.736318	
mm_26898.1	chr3	19264901	19265101	-	1	NA	NA	NA	7	NM_008802	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.015000	0.557214	
mm_108405.1	chr12	81631287	81631487	+	1	NA	NA	NA	138	NM_001033149	69480	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	0.160000	0.761194	-32(CGCTTTTAAAGC,-,0.00),-31(GCTTTTAAAGCC,+,0.00),-30(CTTTTAAAGCCC,+,0.00)
mm_129857.1	chr15	83251628	83251828	-	1	NA	NA	NA	3	NM_001170954	239559	Mm.323805	NM_001004150	ENSMUSG00000047878	A4galt	-	alpha 1,4-galactosyltransferase	protein-coding	0.095000	0.741294	
mm_17517.1	chr2	29251590	29251790	-	1	NA	NA	NA	1303	NR_029460	76220	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0.085000	0.547264	-32(CTTTATTAAAGG,-,0.00)
mm_39840.1	chr5	30887510	30887710	+	1	NA	NA	NA	-1242	NM_174849	231093	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0.060000	0.631841	-33(GACCATAAAAGC,-,0.00)
mm_47453.1	chr5	123572938	123573138	-	1	NA	NA	NA	-23	NM_029929	77573	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0.110000	0.631841	
mm_54288.1	chr6	29249941	29250141	-	1	NA	NA	NA	-22447	NM_001190461	69573	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.005000	0.547264	-37(GGCTCTTTAAGC,-,0.00)
mm_38378.1	chr4	138623911	138624111	-	1	NA	NA	NA	-19	NM_029401	75718	Mm.251530	NM_029401	ENSMUSG00000028753	Vwa5b1	4931403E03Rik	von Willebrand factor A domain containing 5B1	protein-coding	0.010000	0.442786	
mm_91162.1	chr10	20596291	20596491	-	1	NA	NA	NA	-48063	NM_001347366	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.000000	0.348259	
mm_13410.1	chr2	104095701	104095901	+	1	NA	NA	NA	0	NM_007652	12509	Mm.247265	NM_007652	ENSMUSG00000032679	Cd59a	AA987121|Cd59|protectin	CD59a antigen	protein-coding	0.010000	0.537313	
mm_14069.1	chr2	122738549	122738749	+	1	NA	NA	NA	144	NM_019788	18457	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	0.095000	0.661692	
mm_159469.1	chr4	11705942	11706142	+	1	NA	NA	NA	1595	NM_010276	14579	Mm.247486	NM_010276	ENSMUSG00000028214	Gem	AV020497	GTP binding protein (gene overexpressed in skeletal muscle)	protein-coding	0.050000	0.601990	
mm_54618.1	chr6	38433552	38433752	-	1	NA	NA	NA	-273	NM_177185	320538	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	0.090000	0.661692	
mm_164216.1	chr15	84301365	84301565	+	1	NA	NA	NA	-23255	NM_022321	64099	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0.000000	0.597015	
mm_27422.1	chr3	51517858	51518058	-	1	NA	NA	NA	33992	NM_016858	19338	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.015000	0.432836	
mm_102673.1	chr11	65243456	65243656	-	1	NA	NA	NA	26433	NM_145136	214384	Mm.32257	NM_145136	ENSMUSG00000020542	Myocd	BSAC2A|Srfcp	myocardin	protein-coding	0.005000	0.457711	
mm_149397.1	chr19	11389077	11389277	+	1	NA	NA	NA	13689	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.005000	0.467662	
mm_29632.1	chr3	121723302	121723502	-	1	NA	NA	NA	-135	NM_010171	14066	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0.090000	0.671642	
mm_48533.1	chr5	142904299	142904499	-	1	NA	NA	NA	2355	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.030000	0.527363	
mm_4634.1	chr1	179668317	179668517	+	1	NA	NA	NA	186	NM_178653	109232	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	0.085000	0.691542	
mm_145355.1	chr18	56675595	56675795	+	1	NA	NA	NA	-32118	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.020000	0.467662	
mm_132526.1	chr16	37831475	37831675	+	1	NA	NA	NA	-36825	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.005000	0.497512	
mm_39725.1	chr5	28317087	28317287	+	1	NA	NA	NA	-2	NM_028234	381626	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	0.170000	0.761194	
mm_62090.1	chr7	94042541	94042741	+	1	NA	NA	NA	962762	NM_021427	58238	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.035000	0.542289	
mm_91212.1	chr10	21410483	21410683	-	1	NA	NA	NA	33283	NM_178713	237320	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0.030000	0.557214	
mm_116025.1	chr13	25020028	25020228	-	1	NA	NA	NA	189	NM_001013389	380836	Mm.387097	NM_001013389	ENSMUSG00000021339	Mrs2	Gm902|HPT|Mrs2l|RPT	MRS2 magnesium transporter	protein-coding	0.160000	0.810945	
mm_157693.1	chrX	60404703	60404903	-	1	NA	NA	NA	-822	NM_001037863	320940	Mm.490394	NM_001001798	ENSMUSG00000062949	Atp11c	A330005H02Rik|AI315324|Ig	ATPase, class VI, type 11C	protein-coding	0.055000	0.601990	
mm_31118.1	chr4	42952676	42952876	+	1	NA	NA	NA	-318	NM_019874	56323	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.025000	0.611940	
mm_153572.1	chr19	42767393	42767593	-	1	NA	NA	NA	12483	NM_001346703	192236	Mm.218381	NM_019424	ENSMUSG00000025188	Hps1	6030422N11Rik|BB405864|Gm21361|Hps|ep	Hermansky-Pudlak syndrome 1	protein-coding	0.015000	0.482587	
mm_10953.1	chr2	25653021	25653221	+	1	NA	NA	NA	3	NM_033145	78076	Mm.196708	NM_033145	ENSMUSG00000036449	Lcn8	9230106L18Rik|EP17|Lcn5|mEP17	lipocalin 8	protein-coding	0.005000	0.512438	
mm_79702.1	chr9	60866039	60866239	+	1	NA	NA	NA	71591	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.015000	0.587065	
mm_67288.1	chr7	78737130	78737330	-	1	NA	NA	NA	-19010	NR_015542	414121	Mm.482537	NR_015542	ENSMUSG00000059146	E430016F16Rik	-	RIKEN cDNA E430016F16 gene	ncRNA	0.025000	0.358209	75(GCTTATAAACTA,+,0.00)
mm_20648.1	chr2	132029773	132029973	-	1	NA	NA	NA	115	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.110000	0.751244	
mm_117009.1	chr13	58007766	58007966	-	1	NA	NA	NA	15334	NR_030544	100124491		NR_030544	ENSMUSG00000077962	Mir874	Mirn874|mir-874|mmu-mir-874	microRNA 874	ncRNA	0.015000	0.502488	-61(CCCTTTATGACG,+,0.00)
mm_52879.1	chr6	122513282	122513482	+	1	NA	NA	NA	-202	NM_001347434	50530	Mm.41931	NM_015776	ENSMUSG00000030116	Mfap5	MAGP-2|MFAP-5	microfibrillar associated protein 5	protein-coding	0.015000	0.537313	
mm_103769.1	chr11	81968321	81968521	-	1	NA	NA	NA	-25	NM_001034013	11418	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	0.020000	0.502488	
mm_126130.1	chr15	78335193	78335393	+	1	NA	NA	NA	9303	NM_007780	12983	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.005000	0.552239	
mm_140415.1	chr17	87650411	87650611	+	1	NA	NA	NA	14532	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.030000	0.502488	
mm_123223.1	chr14	59597801	59598001	-	1	NA	NA	NA	58	NM_001168537	71891	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0.065000	0.592040	
mm_41787.1	chr5	103736811	103737011	+	1	NA	NA	NA	-17251	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.005000	0.378109	-6(TTTTTTAAAGAC,+,0.00)
mm_99549.1	chr11	103412734	103412934	+	1	NA	NA	NA	-170	NM_183034	353047	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.060000	0.661692	
mm_115543.1	chr13	7175569	7175769	-	1	NA	NA	NA	-526898	NM_001291071	56421	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.030000	0.532338	
mm_140798.1	chr17	21516850	21517050	-	1	NA	NA	NA	-18589	NM_144515	22710	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	0.060000	0.606965	
mm_167302.1	chr8	56344597	56344797	+	1	NA	NA	NA	50145	NM_008278	15446	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.005000	0.412935	
mm_149232.1	chr19	10182812	10183012	+	1	NA	NA	NA	24	NM_146094	76267	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0.170000	0.756219	
mm_11007.1	chr2	26575992	26576192	+	1	NA	NA	NA	-4964	NM_178444	353156	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0.015000	0.592040	
mm_102813.1	chr11	68956791	68956991	-	1	NA	NA	NA	-33	NM_177566	442801	Mm.376147	NM_177566	ENSMUSG00000052921	Arhgef15	D130071N09|D530030K12Rik|E5	Rho guanine nucleotide exchange factor (GEF) 15	protein-coding	0.030000	0.616915	
mm_151644.1	chr19	4042136	4042336	-	1	NA	NA	NA	-15	NM_181796	14869	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	0.045000	0.582090	-33(CCCCTTATAAGG,-,0.00),-31(CCTTATAAGGCT,+,0.00)
mm_168126.1	chr10	23349541	23349741	-	1	NA	NA	NA	249	NM_001347372	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.040000	0.567164	
mm_161114.1	chr12	104751910	104752110	-	1	NA	NA	NA	-58	NM_148948	192119	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	0.205000	0.830846	
mm_157246.1	chrX	18461294	18461494	-	1	NA	NA	NA	3	NR_132634	75905	Mm.159617	NM_175228	ENSMUSG00000037358	4930578C19Rik	-	RIKEN cDNA 4930578C19 gene	protein-coding	0.005000	0.542289	
mm_35320.1	chr4	25800119	25800319	-	1	NA	NA	NA	-216	NM_010243	14348	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.040000	0.567164	
mm_44600.1	chr5	25100329	25100529	-	1	NA	NA	NA	213	NM_145401	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.050000	0.532338	
mm_151708.1	chr19	4615072	4615272	-	1	NA	NA	NA	495	NM_153388	225875	Mm.329675	NM_153388	ENSMUSG00000045045	Lrfn4	BC023156|Salm3	leucine rich repeat and fibronectin type III domain containing 4	protein-coding	0.165000	0.791045	
mm_4913.1	chr1	190594207	190594407	+	1	NA	NA	NA	317463	NM_178775	320119	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.030000	0.477612	-99(CTTTTTAAAGAT,+,0.00)
mm_139182.1	chr17	47593647	47593847	+	1	NA	NA	NA	280	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.095000	0.661692	
mm_18103.1	chr2	44988437	44988637	-	1	NA	NA	NA	34640	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.015000	0.432836	
mm_10312.1	chr2	11172218	11172418	+	1	NA	NA	NA	-64	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.120000	0.731343	
mm_98003.1	chr11	84177542	84177742	+	1	NA	NA	NA	-10166	NM_001037932	628813	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690|OTTMUSG00000000997	predicted gene 11437	protein-coding	0.005000	0.487562	
mm_8828.1	chr1	162570202	162570402	-	1	NA	NA	NA	-526	NM_016796	53330	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e	vesicle-associated membrane protein 4	protein-coding	0.045000	0.527363	
mm_4450.1	chr1	172588877	172589077	+	1	NA	NA	NA	1591	NM_029084	74748	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	0.030000	0.417910	
mm_18986.1	chr2	76856261	76856461	-	1	NA	NA	NA	126186	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.015000	0.417910	
mm_129114.1	chr15	76080784	76080984	-	1	NA	NA	NA	-14	NM_001164600	67959	Mm.29965	NM_028364	ENSMUSG00000002524	Puf60	2410104I19Rik|2810454F19Rik|SIAHBP1	poly-U binding splicing factor 60	protein-coding	0.160000	0.681592	
mm_85280.1	chr9	99691586	99691786	-	1	NA	NA	NA	18377	NM_019815	56492	Mm.386784	NM_019815	ENSMUSG00000032473	Cldn18	-	claudin 18	protein-coding	0.015000	0.398010	-62(CTGTTTAAAAGT,-,0.00)
mm_103329.1	chr11	74547006	74547206	-	1	NA	NA	NA	43052	NM_001015046	380711	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.025000	0.572139	
mm_140871.1	chr17	23786117	23786317	-	1	NA	NA	NA	-140	NM_029798	76917	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	0.070000	0.562189	
mm_158886.1	chr1	10232453	10232653	-	1	NA	NA	NA	117	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.115000	0.726368	
mm_49466.1	chr6	29433158	29433358	+	1	NA	NA	NA	-90	NM_001311074	68794	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	0.105000	0.766169	
mm_91829.1	chr10	56914454	56914654	-	1	NA	NA	NA	537254	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.015000	0.417910	
mm_310.1	chr1	24195109	24195309	+	1	NA	NA	NA	6	NM_001290691	12839	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding	0.015000	0.532338	
mm_19946.1	chr2	117122782	117122982	-	1	NA	NA	NA	1811	NM_033524	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.030000	0.472637	
mm_96539.1	chr11	68691978	68692178	+	1	NA	NA	NA	163	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.080000	0.671642	
mm_50887.1	chr6	56714775	56714975	+	1	NA	NA	NA	-30	NM_030235	78937	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	0.080000	0.701493	-71(TCCTTTAGACCC,+,0.00)
mm_42182.1	chr5	112263421	112263621	+	1	NA	NA	NA	7701	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.030000	0.552239	
mm_57630.1	chr6	128300377	128300577	-	1	NA	NA	NA	336	NM_001080979	21679	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	0.100000	0.731343	
mm_78369.1	chr9	27191638	27191838	+	1	NA	NA	NA	-36317	NM_023277	83964	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	0.010000	0.492537	
mm_46870.1	chr5	113830472	113830672	-	1	NA	NA	NA	-71	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.030000	0.532338	
mm_75359.1	chr8	45262014	45262214	-	1	NA	NA	NA	-83	NM_028066	109821	Mm.33326	NM_028066	ENSMUSG00000031645	F11	1600027G01Rik|AI503996|Cf11|FXI|PTA	coagulation factor XI	protein-coding	0.030000	0.432836	
mm_33387.1	chr4	129772456	129772656	+	1	NA	NA	NA	-30253	NR_045036	20218	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	0.010000	0.572139	
mm_66119.1	chr7	31051360	31051560	-	1	NA	NA	NA	-6	NM_022007	57780	Mm.41770	NM_022007	ENSMUSG00000036578	Fxyd7	1110035I01Rik	FXYD domain-containing ion transport regulator 7	protein-coding	0.035000	0.676617	
mm_86965.1	chr10	25359732	25359932	+	1	NA	NA	NA	34	NM_001199265	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.120000	0.746269	
mm_90004.1	chr10	112726820	112727020	+	1	NA	NA	NA	-6	NR_040579	69355	Mm.84337	NR_040579	ENSMUSG00000100314	1700010J16Rik	-	RIKEN cDNA 1700010J16 gene	ncRNA	0.015000	0.432836	
mm_20384.1	chr2	128943910	128944110	-	1	NA	NA	NA	10	NM_020594	57432	Mm.11675	NM_020594	ENSMUSG00000027387	Zc3h8	AU020882|E130108N08Rik|Fliz1|Zc3hdc8	zinc finger CCCH type containing 8	protein-coding	0.120000	0.636816	
mm_127674.1	chr15	102762182	102762382	+	1	NA	NA	NA	-15373	NR_104334	102216269		NR_104334		Gm38436	Cistr|Cistr-act	predicted gene, 38436	ncRNA	0.010000	0.378109	
mm_128987.1	chr15	74834568	74834768	-	1	NA	NA	NA	6975	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.000000	0.437811	
mm_109681.1	chr12	113133418	113133618	+	1	NA	NA	NA	-6718	NM_024223	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.030000	0.606965	
mm_42053.1	chr5	108669197	108669397	+	1	NA	NA	NA	5499	NM_001310692	231583	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0.100000	0.651741	21(CCGCCTAAAAAG,-,0.00)
mm_197.1	chr1	16051453	16051653	+	1	NA	NA	NA	41772	NM_001305227	75799	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	0.015000	0.412935	-41(GCCTCTAAAAGG,-,0.00),-32(AGGTATAAAAAC,-,0.00)
mm_13554.1	chr2	112261848	112262048	+	1	NA	NA	NA	22	NM_025403	66181	Mm.272346	NM_025403	ENSMUSG00000027133	Nop10	1110036B12Rik|NOP10P|Nola3	NOP10 ribonucleoprotein	protein-coding	0.060000	0.512438	
mm_126119.1	chr15	78325637	78325837	+	1	NA	NA	NA	-253	NM_007780	12983	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.000000	0.562189	
mm_139253.1	chr17	47734314	47734514	+	1	NA	NA	NA	-2623	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.010000	0.527363	
mm_24784.1	chr3	95541550	95541750	+	1	NA	NA	NA	14864	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.000000	0.437811	
mm_87086.1	chr10	31313298	31313498	+	1	NA	NA	NA	-7	NM_027168	69692	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	0.050000	0.641791	
mm_129746.1	chr15	82244636	82244836	-	1	NA	NA	NA	11	NM_178269	66570	Mm.23596	NM_025639	ENSMUSG00000068101	Cenpm	2610019I03Rik|AI853711|Pane1	centromere protein M	protein-coding	0.095000	0.606965	-73(TGCTTTTAAAAG,-,0.00),-72(GCTTTTAAAAGT,+,0.00),-71(CTTTTAAAAGTG,+,0.00)
mm_17464.1	chr2	28557942	28558142	-	1	NA	NA	NA	5361	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.030000	0.517413	
mm_37210.1	chr4	117887151	117887351	-	1	NA	NA	NA	78	NM_033617	114143	Mm.207052	NM_033617	ENSMUSG00000033379	Atp6v0b	2310024H13Rik|Atp6f|VMA16	ATPase, H+ transporting, lysosomal V0 subunit B	protein-coding	0.110000	0.706468	
mm_65305.1	chr7	24750309	24750509	-	1	NA	NA	NA	9902	NM_026862	68891	Mm.292848	NM_026862	ENSMUSG00000052212	Cd177	1190003K14Rik|Pdp3	CD177 antigen	protein-coding	0.040000	0.587065	
mm_157218.1	chrX	13071827	13072027	-	1	NA	NA	NA	429	NM_009481	22284	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	0.070000	0.681592	
mm_17210.1	chr2	25477985	25478185	-	1	NA	NA	NA	-8336	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.000000	0.547264	
mm_148033.1	chr18	70141495	70141695	-	1	NA	NA	NA	10	NM_001082553	80718	Mm.246753	NM_030554	ENSMUSG00000024511	Rab27b	2310021G14Rik|B130064M09Rik	RAB27B, member RAS oncogene family	protein-coding	0.025000	0.522388	
mm_158390.1	chrX	136172139	136172339	-	1	NA	NA	NA	12	NM_001168578	66684	Mm.182094	NM_025703	ENSMUSG00000051579	Tceal8	3930402F23Rik	transcription elongation factor A (SII)-like 8	protein-coding	0.030000	0.522388	
mm_151519.1	chr19	58738260	58738460	+	1	NA	NA	NA	9473	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.015000	0.482587	
mm_139111.1	chr17	47385278	47385478	+	1	NA	NA	NA	-15	NM_146079	107477	Mm.59151	NM_146079	ENSMUSG00000023979	Guca1b	BC018258|GCAP2	guanylate cyclase activator 1B	protein-coding	0.025000	0.577114	
mm_142542.1	chr17	46555941	46556141	-	1	NA	NA	NA	121	NM_020493	20807	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0.140000	0.820896	
mm_164754.1	chr17	82539064	82539264	+	1	NA	NA	NA	539061	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0.030000	0.532338	
mm_88720.1	chr10	80167739	80167939	+	1	NA	NA	NA	-2	NM_007705	12696	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.105000	0.671642	
mm_135561.1	chr16	50070614	50070814	-	1	NA	NA	NA	2138	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.000000	0.427861	
mm_140434.1	chr17	88440628	88440828	+	1	NA	NA	NA	16	NM_180974	14236	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.095000	0.776119	
mm_14125.1	chr2	126025216	126025416	+	1	NA	NA	NA	-9342	NM_008008	14178	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0.005000	0.442786	
mm_1257.1	chr1	63114344	63114544	+	1	NA	NA	NA	-27	NR_045915	100380944	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602|OTTMUSG00000002611	INO80 complex subunit D, opposite strand	ncRNA	0.030000	0.532338	
mm_107078.1	chr12	16965428	16965628	+	1	NA	NA	NA	34590	NM_172574	217430	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	0.005000	0.293532	
mm_132562.1	chr16	38089278	38089478	+	1	NA	NA	NA	-118	NR_033221	414072	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.110000	0.681592	
mm_156218.1	chrX	134717836	134718036	+	1	NA	NA	NA	-2	NM_001166380	78248	Mm.458522	NM_030066	ENSMUSG00000033460	Armcx1	3010033I09Rik|ALEX1	armadillo repeat containing, X-linked 1	protein-coding	0.030000	0.577114	
mm_83919.1	chr9	56549035	56549235	-	1	NA	NA	NA	86513	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.000000	0.522388	-36(CACTATAAAAGG,-,0.00)
mm_86384.1	chr9	123872033	123872233	-	1	NA	NA	NA	-10104	NM_011798	23832	Mm.390241	NM_011798	ENSMUSG00000060509	Xcr1	Ccxcr1|Gpr5|mXcr1	chemokine (C motif) receptor 1	protein-coding	0.010000	0.388060	73(ACTTTTAAAGTC,+,0.00)
mm_67647.1	chr7	84605723	84605923	-	1	NA	NA	NA	119	NM_010176	14085	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	-	fumarylacetoacetate hydrolase	protein-coding	0.060000	0.666667	
mm_14985.1	chr2	152179444	152179644	+	1	NA	NA	NA	35935	NM_009328	21407	Mm.3881	NM_009328	ENSMUSG00000068079	Tcf15	Meso1|bHLH-EC2	transcription factor 15	protein-coding	0.000000	0.542289	-34(GGGCTTAAAAAG,-,0.00),-32(GCTTAAAAAGGG,+,0.00)
mm_34718.1	chr4	152128896	152129096	+	1	NA	NA	NA	-71	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.005000	0.611940	
mm_43744.1	chr5	140264288	140264488	+	1	NA	NA	NA	57164	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.035000	0.532338	
mm_9028.1	chr1	166483366	166483566	-	1	NA	NA	NA	14122	NM_001164306	226601	Mm.475593	NM_001164306	ENSMUSG00000086056	Gm4846	EG226601|Fmo13	predicted gene 4846	protein-coding	0.010000	0.318408	
mm_90563.1	chr10	128225738	128225938	+	1	NA	NA	NA	28	NM_008600	17339	Mm.31625	NM_008600	ENSMUSG00000025389	Mip	Aqp0|Cat|Cts|Hfi|Lop|MIP26|MP26|Svl|shrivelled	major intrinsic protein of lens fiber	protein-coding	0.005000	0.552239	-36(TCCTCTATAAAG,-,0.00),-34(CTCTATAAAGGG,+,0.00),-34(CTCTATAAAGGG,-,0.00)
mm_157637.1	chrX	57188823	57189023	-	1	NA	NA	NA	-11714	NR_038463	100502842	Mm.164733	NR_038463	ENSMUSG00000085808	Gm14718	OTTMUSG00000017790	predicted gene 14718	ncRNA	0.005000	0.457711	
mm_128103.1	chr15	27968134	27968334	-	1	NA	NA	NA	57614	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.030000	0.497512	
mm_123673.1	chr14	69249619	69249819	-	1	NA	NA	NA	35384	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.010000	0.398010	
mm_148389.1	chr19	3388783	3388983	+	1	NA	NA	NA	26	NM_001039657	17771	Mm.209941	NM_010841	ENSMUSG00000024905	Mtl5	tesmin	metallothionein-like 5, testis-specific (tesmin)	protein-coding	0.095000	0.686567	
mm_133439.1	chr16	87700107	87700307	+	1	NA	NA	NA	1253	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.040000	0.557214	-34(CACTATAAAAGG,-,0.00)
mm_30739.1	chr4	14240104	14240304	+	1	NA	NA	NA	51105	NR_131155	100040030	Mm.366499	NR_131155		Gm2560	-	predicted gene 2560	ncRNA	0.015000	0.472637	
mm_100585.1	chr11	120948448	120948648	+	1	NA	NA	NA	64	NM_030696	80879	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0.030000	0.582090	
mm_144423.1	chr18	21001170	21001370	+	1	NA	NA	NA	-30	NM_019706	56515	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	0.095000	0.661692	
mm_113447.1	chr13	35738350	35738550	+	1	NA	NA	NA	-2952	NM_001123386	12593	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.005000	0.497512	
mm_28093.1	chr3	85887335	85887535	-	1	NA	NA	NA	83	NM_177130	320302	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding	0.070000	0.691542	
mm_512.1	chr1	37299810	37300010	+	1	NA	NA	NA	72	NM_001290797	269180	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.115000	0.741294	
mm_117753.1	chr13	95957511	95957711	-	1	NA	NA	NA	-65689	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.005000	0.462687	
mm_148980.1	chr19	7591708	7591908	+	1	NA	NA	NA	15368	NM_019516	56072	Mm.298242	NM_019516	ENSMUSG00000024972	Lgals12	AW987437|Grip1	lectin, galactose binding, soluble 12	protein-coding	0.005000	0.388060	
mm_142384.1	chr17	44814318	44814518	-	1	NA	NA	NA	209	NM_009820	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.015000	0.398010	
mm_58479.1	chr7	3423533	3423733	+	1	NA	NA	NA	-188	NR_126426	70230	Mm.458356	NR_126426	ENSMUSG00000107585	3300002P13Rik	-	RIKEN cDNA 3300002P13 gene	ncRNA	0.095000	0.681592	
mm_67480.1	chr7	80711938	80712138	-	1	NA	NA	NA	-23161	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.010000	0.472637	
mm_20840.1	chr2	147977049	147977249	-	1	NA	NA	NA	68315	NM_001291067	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.000000	0.417910	
mm_110401.1	chr12	44210283	44210483	-	1	NA	NA	NA	70	NR_049203	100885842		NR_049203	ENSMUSG00000093618	Mir5627	Gm23684|mir-5627|mmu-mir-5627	microRNA 5627	ncRNA	0.095000	0.626866	
mm_689.1	chr1	40542888	40543088	+	1	NA	NA	NA	27626	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.015000	0.482587	
mm_36369.1	chr4	76450387	76450587	-	1	NA	NA	NA	-1172201	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.085000	0.611940	
mm_141512.1	chr17	31678049	31678249	-	1	NA	NA	NA	218	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.040000	0.572139	
mm_162250.1	chrX	163549624	163549824	-	1	NA	NA	NA	12	NM_008177	14829	Mm.4687	NM_008177	ENSMUSG00000031364	Grpr	GRP-R	gastrin releasing peptide receptor	protein-coding	0.010000	0.447761	
mm_55393.1	chr6	60462111	60462311	-	1	NA	NA	NA	-58504	NR_015565	208079	Mm.131226	NM_177329	ENSMUSG00000046764	A530053G22Rik	-	RIKEN cDNA A530053G22 gene	ncRNA	0.025000	0.388060	
mm_94747.1	chr11	21105832	21106032	+	1	NA	NA	NA	14608	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.005000	0.293532	
mm_165792.1	chr3	138112370	138112570	+	1	NA	NA	NA	18907	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	0.005000	0.442786	
mm_153429.1	chr19	40894522	40894722	-	1	NA	NA	NA	-81	NR_106167	102466881		NR_106167	ENSMUSG00000099118	Mir8092	Gm27407|mmu-mir-8092	microRNA 8092	ncRNA	0.135000	0.736318	
mm_104890.1	chr11	99566533	99566733	-	1	NA	NA	NA	-3	NM_023511	69473	Mm.158281	NM_023511	ENSMUSG00000047564	Krtap3-1	2310003K17Rik|KAP3.1|KRTAP3.1	keratin associated protein 3-1	protein-coding	0.030000	0.547264	-39(GGGTATATAAAA,-,0.00),-37(GTATATAAAAGC,-,0.00)
mm_87322.1	chr10	42860605	42860805	+	1	NA	NA	NA	193	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.040000	0.527363	
mm_27890.1	chr3	79286908	79287108	-	1	NA	NA	NA	-58368	NM_001142953	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.150000	0.786070	
mm_167291.1	chr8	45409844	45410044	-	1	NA	NA	NA	595	NM_126166	142980	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0.005000	0.427861	
mm_149537.1	chr19	12465749	12465949	+	1	NA	NA	NA	5070	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.005000	0.472637	
mm_53964.1	chr6	5819713	5819913	-	1	NA	NA	NA	94174	NM_001191026	13426	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0.010000	0.492537	
mm_51642.1	chr6	86017167	86017367	+	1	NA	NA	NA	76	NM_012013	26910	Mm.8024	NM_012013	ENSMUSG00000030001	Figla	FIGalpha|bHLHc8	folliculogenesis specific basic helix-loop-helix	protein-coding	0.045000	0.671642	
mm_87074.1	chr10	29200734	29200934	+	1	NA	NA	NA	-10809	NM_001162537	212448	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	0.005000	0.373134	
mm_154885.1	chrX	20719712	20719912	+	1	NA	NA	NA	15903	NM_145628	236733	Mm.34489	NM_145628	ENSMUSG00000031066	Usp11	6230415D12Rik|mKIAA4085	ubiquitin specific peptidase 11	protein-coding	0.015000	0.502488	
mm_4603.1	chr1	178406428	178406628	+	1	NA	NA	NA	647	NM_026626	68226	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.080000	0.646766	
mm_46653.1	chr5	108660703	108660903	-	1	NA	NA	NA	-34	NM_199011	110524	Mm.260921	NM_199011	ENSMUSG00000004815	Dgkq	110kDa|DAGK|DAGK7|Dagk4|Dgkd	diacylglycerol kinase, theta	protein-coding	0.090000	0.701493	
mm_5371.1	chr1	30642235	30642435	-	1	NA	NA	NA	220921	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding	0.005000	0.383085	51(GATCTTTAAAGG,-,0.00),53(TCTTTAAAGGAG,+,0.00)
mm_152542.1	chr19	11335961	11336161	-	1	NA	NA	NA	85	NM_001025610	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.010000	0.537313	
mm_29884.1	chr3	131112529	131112729	-	1	NA	NA	NA	-162	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.025000	0.517413	-73(TGCCATTTAAGG,-,0.00),-71(CCATTTAAGGAA,+,0.00)
mm_38210.1	chr4	135873976	135874176	-	1	NA	NA	NA	-230	NM_026383	52830	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.080000	0.651741	
mm_5525.1	chr1	37890217	37890417	-	1	NA	NA	NA	94	NM_026913	69028	Mm.63984	NM_026913	ENSMUSG00000026088	Mitd1	1500032H18Rik	MIT, microtubule interacting and transport, domain containing 1	protein-coding	0.080000	0.621891	
mm_51255.1	chr6	71912143	71912343	+	1	NA	NA	NA	3190	NM_009088	20019	Mm.135581	NM_009088	ENSMUSG00000049553	Polr1a	194kDa|3010014K16Rik|RPA194|Rpo1-4|mRPA1	polymerase (RNA) I polypeptide A	protein-coding	0.005000	0.492537	
mm_102404.1	chr11	59163202	59163402	-	1	NA	NA	NA	443	NM_001270791	216792	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	0.030000	0.532338	
mm_62632.1	chr7	107639021	107639221	+	1	NA	NA	NA	32277	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.015000	0.507463	
mm_31616.1	chr4	59035371	59035571	+	1	NA	NA	NA	315	NM_025277	14700	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	0.125000	0.736318	
mm_73888.1	chr8	119394810	119395010	+	1	NA	NA	NA	18	NM_019966	56690	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	0.125000	0.731343	
mm_130508.1	chr15	98845666	98845866	-	1	NA	NA	NA	-14258	NM_016781	19082	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.005000	0.621891	
mm_112578.1	chr13	13694358	13694558	+	1	NA	NA	NA	-89601	NM_001302997	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0.010000	0.402985	
mm_27487.1	chr3	54686715	54686915	-	1	NA	NA	NA	-6290	NM_019995	56790	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0.000000	0.412935	
mm_40317.1	chr5	43874982	43875182	+	1	NA	NA	NA	6273	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.000000	0.512438	
mm_23215.1	chr3	45378305	45378505	+	1	NA	NA	NA	7	NM_001098171	18526	Mm.242644	NM_011043	ENSMUSG00000049100	Pcdh10	6430521D13Rik|6430703F07Rik|OL-pc|mKIAA1400	protocadherin 10	protein-coding	0.055000	0.582090	
mm_65851.1	chr7	29281552	29281752	-	1	NA	NA	NA	325	NM_001082548	20733	Mm.295230	NM_011464	ENSMUSG00000074227	Spint2	AL024025|C76321|HAI-2	serine protease inhibitor, Kunitz type 2	protein-coding	0.130000	0.746269	
mm_170374.1	chr18	55202172	55202372	-	1	NA	NA	NA	-212092	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.035000	0.497512	
mm_19773.1	chr2	105904406	105904606	-	1	NA	NA	NA	58	NM_023876	77766	Mm.3608	NM_023876	ENSMUSG00000027167	Elp4	A330107A17Rik|Paxneb	elongator acetyltransferase complex subunit 4	protein-coding	0.075000	0.631841	
mm_61778.1	chr7	83641727	83641927	+	1	NA	NA	NA	9810	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.010000	0.457711	
mm_157299.1	chrX	20928288	20928488	-	1	NA	NA	NA	3167	NM_008823	18636	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	0.015000	0.601990	
mm_139543.1	chr17	56734734	56734934	+	1	NA	NA	NA	606	NR_033644	14346	Mm.160272	NR_033644		Fut4-ps1	-	fucosyltransferase 4, pseudogene 1	pseudo	0.010000	0.537313	
mm_114960.1	chr13	97071341	97071541	+	1	NA	NA	NA	-202	NM_001100458	320557	Mm.458280	NM_001100458	ENSMUSG00000041817	Fam169a	B230112C05Rik|SLAP75	family with sequence similarity 169, member A	protein-coding	0.190000	0.791045	-57(TCTTTAATACGG,+,0.00)
mm_7597.1	chr1	125912080	125912280	-	1	NA	NA	NA	34	NM_145100	72585	Mm.490405	NM_145100	ENSMUSG00000026344	Lypd1	2700050C12Rik|AI853408|C530008O16Rik|Lynx2|Lypdc1	Ly6/Plaur domain containing 1	protein-coding	0.065000	0.666667	
mm_83007.1	chr9	36759146	36759346	-	1	NA	NA	NA	8332	NM_008408	16430	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	0.020000	0.452736	
mm_63104.1	chr7	122628802	122629002	+	1	NA	NA	NA	-42842	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.005000	0.422886	
mm_47989.1	chr5	135957416	135957616	-	1	NA	NA	NA	16960	NM_001160366	109267	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0.040000	0.482587	
mm_111587.1	chr12	101958087	101958287	-	1	NA	NA	NA	56	NM_029705	110616	Mm.271914	NM_029705	ENSMUSG00000021189	Atxn3	2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3	ataxin 3	protein-coding	0.095000	0.696517	
mm_143876.1	chr17	84187647	84187847	-	1	NA	NA	NA	200	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.085000	0.577114	
mm_134216.1	chr16	11253669	11253869	-	1	NA	NA	NA	556	NM_001130008	14852	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	0.130000	0.711443	
mm_19977.1	chr2	118373225	118373425	-	1	NA	NA	NA	94	NM_201367	381413	Mm.70979	NM_201367	ENSMUSG00000040133	Gpr176	Gm1012	G protein-coupled receptor 176	protein-coding	0.090000	0.741294	
mm_129024.1	chr15	74958614	74958814	-	1	NA	NA	NA	3608	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.015000	0.592040	-61(GGACCTAAAAGG,-,0.00)
mm_148077.1	chr18	72350982	72351182	-	1	NA	NA	NA	-13	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.050000	0.587065	
mm_84798.1	chr9	77230295	77230495	-	1	NA	NA	NA	117475	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.015000	0.487562	
mm_19315.1	chr2	90550033	90550233	-	1	NA	NA	NA	30514	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.000000	0.368159	20(GCTTTTAAAAAA,+,0.00)
mm_109412.1	chr12	110463826	110464026	+	1	NA	NA	NA	16747	NM_001135001	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.020000	0.532338	
mm_100911.1	chr11	6230044	6230244	-	1	NA	NA	NA	101	NM_207242	237636	Mm.212492	NM_207242	ENSMUSG00000020447	Npc1l1	9130221N23Rik|Gm243	NPC1-like 1	protein-coding	0.010000	0.577114	
mm_166427.1	chr5	137152289	137152489	+	1	NA	NA	NA	-36182	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.462687	
mm_112306.1	chr12	114809806	114810006	-	1	NA	NA	NA	-296212	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.442786	
mm_55178.1	chr6	52012467	52012667	-	1	NA	NA	NA	-18	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.085000	0.651741	
mm_104656.1	chr11	97576245	97576445	-	1	NA	NA	NA	-1219	NM_018873	56013	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.015000	0.552239	
mm_35427.1	chr4	35225723	35225923	-	1	NA	NA	NA	57	NM_001081343	73205	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585	RIKEN cDNA 3110043O21 gene	protein-coding	0.150000	0.815920	
mm_172414.1	chr7	19991343	19991543	+	1	NA	NA	NA	-16580	NM_194058	243874	Mm.277114	NM_194058	ENSMUSG00000060508	Nlrp9b	Nalp-delta|Nalp9b|Nlrp9	NLR family, pyrin domain containing 9B	protein-coding	0.025000	0.562189	-32(GCCCTTATAAGC,-,0.00),-30(CCTTATAAGCAC,+,0.00)
mm_136750.1	chr17	8525283	8525483	+	1	NA	NA	NA	-1418	NM_001290707	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.055000	0.557214	
mm_115089.1	chr13	102706191	102706391	+	1	NA	NA	NA	12733	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.025000	0.417910	
mm_119383.1	chr14	41136317	41136517	+	1	NA	NA	NA	4629	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.010000	0.333333	
mm_44657.1	chr5	28237784	28237984	-	1	NA	NA	NA	7904	NM_001310512	269637	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.000000	0.552239	
mm_76226.1	chr8	83573014	83573214	-	1	NA	NA	NA	6356	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.050000	0.577114	35(TCATTTATGGCC,+,0.00)
mm_18237.1	chr2	51973127	51973327	-	1	NA	NA	NA	-19	NM_001141948	64685	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0.015000	0.398010	0(CCGTCTAAAAAG,-,0.00)
mm_100406.1	chr11	119415630	119415830	+	1	NA	NA	NA	25258	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.015000	0.477612	
mm_102024.1	chr11	51650697	51650897	-	1	NA	NA	NA	-157	NR_027958	97775	Mm.220299	NM_175289	ENSMUSG00000052563	D930048N14Rik	AI315703|R75254	RIKEN cDNA D930048N14 gene	ncRNA	0.125000	0.726368	
mm_143080.1	chr17	57045240	57045440	-	1	NA	NA	NA	-3686	NM_175333	103775	Mm.33647	NM_175333	ENSMUSG00000011486	Slc25a41	4933406J04Rik|AI507137	solute carrier family 25, member 41	protein-coding	0.010000	0.562189	
mm_58134.1	chr6	140747119	140747319	-	1	NA	NA	NA	120334	NM_001309436	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.060000	0.527363	
mm_31326.1	chr4	46450798	46450998	+	1	NA	NA	NA	-28	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.150000	0.776119	
mm_97285.1	chr11	76201919	76202119	+	1	NA	NA	NA	-37	NM_027773	116972	Mm.188413	NM_027773	ENSMUSG00000069808	Fam57a	2310047D13Rik|4932415L08Rik|5430402E13Rik|5430420K21Rik|Wdt3	family with sequence similarity 57, member A	protein-coding	0.155000	0.786070	
mm_153485.1	chr19	41305828	41306028	-	1	NA	NA	NA	-41924	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.000000	0.378109	
mm_63223.1	chr7	126353456	126353656	+	1	NA	NA	NA	14489	NR_106025	102466797		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.020000	0.557214	
mm_102532.1	chr11	61159245	61159445	-	1	NA	NA	NA	15714	NM_001004143	216825	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	0.020000	0.547264	
mm_154165.1	chr19	58673026	58673226	-	1	NA	NA	NA	2761	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.030000	0.417910	
mm_67644.1	chr7	84594721	84594921	-	1	NA	NA	NA	11121	NM_010176	14085	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	-	fumarylacetoacetate hydrolase	protein-coding	0.020000	0.537313	
mm_164121.1	chr15	38300187	38300387	+	1	NA	NA	NA	424	NM_013692	21847	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.035000	0.562189	
mm_82444.1	chr9	15301463	15301663	-	1	NA	NA	NA	44	NM_133732	70984	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0.015000	0.547264	
mm_159363.1	chr3	87729393	87729593	+	1	NA	NA	NA	19130	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding	0.020000	0.547264	
mm_53009.1	chr6	123272074	123272274	+	1	NA	NA	NA	10067	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.010000	0.353234	44(GTATTTAAAAGG,-,0.00)
mm_46578.1	chr5	107406274	107406474	-	1	NA	NA	NA	2861	NM_001001804	384214	Mm.489863	NM_001001804	ENSMUSG00000033805	Ephx4	Abhd7|Ephxrp|Gm1382	epoxide hydrolase 4	protein-coding	0.010000	0.422886	
mm_90356.1	chr10	127165282	127165482	+	1	NA	NA	NA	226	NM_001244617	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.115000	0.711443	
mm_78751.1	chr9	42264375	42264575	+	1	NA	NA	NA	-175	NM_172769	235293	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	0.120000	0.666667	
mm_162599.1	chr1	183147430	183147630	-	1	NA	NA	NA	27	NM_001278220	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0.010000	0.587065	
mm_140310.1	chr17	86167552	86167752	+	1	NA	NA	NA	-133	NM_011104	18754	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0.125000	0.671642	
mm_79862.1	chr9	65032545	65032745	+	1	NA	NA	NA	187	NM_028906	74388	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	0.145000	0.781095	
mm_130580.1	chr15	99527699	99527899	-	1	NA	NA	NA	366	NM_028224	72393	Mm.39760	NM_028224	ENSMUSG00000023011	Faim2	2900002L20Rik|Lfg|Lfg2|NMP25|Nmp35|Tmbim2	Fas apoptotic inhibitory molecule 2	protein-coding	0.060000	0.666667	
mm_33351.1	chr4	129381327	129381527	+	1	NA	NA	NA	-3399	NM_028603	73680	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	0.025000	0.592040	
mm_158119.1	chrX	102251976	102252176	-	1	NA	NA	NA	105	NM_001276466	12705	Mm.2390	NM_007709	ENSMUSG00000051159	Cited1	AI316840|AU019144|Msg1	Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1	protein-coding	0.070000	0.636816	
mm_57237.1	chr6	123282897	123283097	-	1	NA	NA	NA	6874	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.010000	0.452736	
mm_167081.1	chr7	101111912	101112112	+	1	NA	NA	NA	3237	NM_199012	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.010000	0.437811	
mm_151529.1	chr19	58744020	58744220	+	1	NA	NA	NA	15233	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.025000	0.487562	
mm_28381.1	chr3	89998580	89998780	-	1	NA	NA	NA	36	NM_011826	23897	Mm.256035	NM_011826	ENSMUSG00000027944	Hax1	HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s	HCLS1 associated X-1	protein-coding	0.080000	0.587065	
mm_45977.1	chr5	90472427	90472627	-	1	NA	NA	NA	11657	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.477612	
mm_26078.1	chr3	136670476	136670676	+	1	NA	NA	NA	510	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.115000	0.681592	
mm_42145.1	chr5	111418161	111418361	+	1	NA	NA	NA	95	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.065000	0.606965	
mm_116791.1	chr13	53421553	53421753	-	1	NA	NA	NA	27964	NR_037991	100040421	Mm.83967	NR_037991	ENSMUSG00000107008	Gm2762	1700025I17Rik	predicted gene 2762	ncRNA	0.000000	0.487562	
mm_122101.1	chr14	30915626	30915826	-	1	NA	NA	NA	7861	NM_008407	16426	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	0.020000	0.522388	
mm_129590.1	chr15	79789535	79789735	-	1	NA	NA	NA	15074	NM_030689	73340	Mm.38438	NM_030689	ENSMUSG00000022421	Nptxr	1200009K17Rik|1700036C17Rik|5730406O18Rik|AI452369|AI785356|D15Bwg0580e|NPR|Npcd	neuronal pentraxin receptor	protein-coding	0.015000	0.597015	
mm_64410.1	chr7	142512152	142512352	+	1	NA	NA	NA	-5481	NR_033261	677289	Mm.350054	NR_033261	ENSMUSG00000043795	Prr33	ENSMUSG00000043795|Gm14492|OTTMUSG00000016823	proline rich 33	ncRNA	0.030000	0.532338	
mm_12072.1	chr2	59645396	59645596	+	1	NA	NA	NA	-1273	NM_001290659	66860	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.000000	0.348259	
mm_87847.1	chr10	60931943	60932143	+	1	NA	NA	NA	6089	NR_033616	73616	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	0.040000	0.502488	
mm_42727.1	chr5	120613289	120613489	+	1	NA	NA	NA	259	NM_028041	71990	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0.100000	0.626866	
mm_158470.1	chrX	141207485	141207685	-	1	NA	NA	NA	-250874	NM_001164177	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	0.010000	0.388060	
mm_29086.1	chr3	104511773	104511973	-	1	NA	NA	NA	45	NM_001310698	269473	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0.120000	0.696517	
mm_83216.1	chr9	42124027	42124227	-	1	NA	NA	NA	162	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.150000	0.756219	
mm_29263.1	chr3	107329825	107330025	-	1	NA	NA	NA	3364	NM_001045807	229700	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.005000	0.293532	
mm_140344.1	chr17	86825556	86825756	+	1	NA	NA	NA	71792	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.025000	0.616915	
mm_1631.1	chr1	74505931	74506131	+	1	NA	NA	NA	-29	NM_021383	58184	Mm.291708	NM_021383	ENSMUSG00000026174	Cnot9	2610007F23Rik|AI593551|Fl10|Rqcd1	CCR4-NOT transcription complex, subunit 9	protein-coding	0.075000	0.601990	
mm_125755.1	chr15	73751298	73751498	+	1	NA	NA	NA	3372	NM_008975	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.035000	0.601990	
mm_97056.1	chr11	72607299	72607499	+	1	NA	NA	NA	138	NM_025985	67128	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	0.150000	0.756219	
mm_10668.1	chr2	20968609	20968809	+	1	NA	NA	NA	-165	NR_033225	433408	Mm.386941	NR_033225		Gm13375	OTTMUSG00000011664	predicted gene 13375	ncRNA	0.150000	0.751244	
mm_161897.1	chr18	44812090	44812290	-	1	NA	NA	NA	-8	NM_001085373	328949	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0.105000	0.691542	
mm_67090.1	chr7	68742536	68742736	-	1	NA	NA	NA	6602	NM_001042592	66412	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.020000	0.452736	
mm_153172.1	chr19	34493556	34493756	-	1	NA	NA	NA	-18521	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.005000	0.442786	-95(CCTTTTAAGTGT,+,0.00)
mm_69975.1	chr7	142377026	142377226	-	1	NA	NA	NA	-3380	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.005000	0.547264	
mm_40947.1	chr5	76822433	76822633	+	1	NA	NA	NA	-18066	NM_001163793	320827	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.030000	0.492537	-41(CCTTTTAAGAAG,+,0.00)
mm_35622.1	chr4	43454470	43454670	-	1	NA	NA	NA	56	NM_001110320	12517	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.035000	0.552239	
mm_83436.1	chr9	44999139	44999339	-	1	NA	NA	NA	10351	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.010000	0.482587	
mm_112616.1	chr13	15463788	15463988	+	1	NA	NA	NA	165	NM_008130	14634	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0.125000	0.716418	
mm_5872.1	chr1	53785077	53785277	-	1	NA	NA	NA	38	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.090000	0.631841	
mm_112427.1	chr13	4233644	4233844	+	1	NA	NA	NA	4	NM_001013785	432720	Mm.22832	NM_001013785	ENSMUSG00000071551	Akr1c19	1810010N06Rik	aldo-keto reductase family 1, member C19	protein-coding	0.010000	0.467662	
mm_4938.1	chr1	191172288	191172488	+	1	NA	NA	NA	-7571	NM_001109759	619288	Mm.61148	NM_001109759	ENSMUSG00000091017	Fam71a	4933417M04Rik|GARI-L4	family with sequence similarity 71, member A	protein-coding	0.020000	0.527363	
mm_114905.1	chr13	94826902	94827102	+	1	NA	NA	NA	38059	NM_009321	21371	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0.000000	0.348259	-7(TTTTTTAAAGAG,+,0.00)
mm_10068.1	chr1	193510109	193510309	-	1	NA	NA	NA	-2679	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.010000	0.512438	-32(GCATAAATAGAG,+,0.00)
mm_65826.1	chr7	29179072	29179272	-	1	NA	NA	NA	1501	NM_026545	57296	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	0.020000	0.507463	
mm_87239.1	chr10	40883459	40883659	+	1	NA	NA	NA	25	NM_031877	83767	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	0.060000	0.616915	
mm_142417.1	chr17	45567972	45568172	-	1	NA	NA	NA	3920	NM_028662	73836	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.025000	0.527363	
mm_27854.1	chr3	79157110	79157310	-	1	NA	NA	NA	-11335	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.407960	
mm_45255.1	chr5	62766306	62766506	-	1	NA	NA	NA	-229	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.105000	0.736318	
mm_80417.1	chr9	77838752	77838952	+	1	NA	NA	NA	-78513	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.010000	0.527363	
mm_74834.1	chr8	23208283	23208483	-	1	NA	NA	NA	70	NM_018743	102247	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	0.130000	0.726368	
mm_68010.1	chr7	100939036	100939236	-	1	NA	NA	NA	-6975	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.040000	0.577114	
mm_99812.1	chr11	108395839	108396039	+	1	NA	NA	NA	642	NM_013475	11818	Mm.2266	NM_013475	ENSMUSG00000000049	Apoh	B2GPI|beta-2-GPI|beta2-GPI	apolipoprotein H	protein-coding	0.025000	0.522388	-83(CCCCTTAAAGAC,+,0.00)
mm_141981.1	chr17	35164748	35164948	-	1	NA	NA	NA	29	NM_001199044	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.135000	0.786070	
mm_43151.1	chr5	125531703	125531903	+	1	NA	NA	NA	-615	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0.055000	0.616915	
mm_147215.1	chr18	37969876	37970076	-	1	NA	NA	NA	-245	NM_175684	319262	Mm.285060	NM_175684	ENSMUSG00000038524	Fchsd1	A030002D08Rik	FCH and double SH3 domains 1	protein-coding	0.050000	0.517413	
mm_47383.1	chr5	122990362	122990562	-	1	NA	NA	NA	1108	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.015000	0.467662	
mm_133988.1	chr16	4624888	4625088	-	1	NA	NA	NA	-42	NM_025571	66449	Mm.354760	NM_025571	ENSMUSG00000014301	Pam16	2010110I09Rik|AV006767|CGI-136|Magmas|Tim16|Timm16	presequence translocase-asssociated motor 16 homolog (S. cerevisiae)	protein-coding	0.085000	0.666667	
mm_32261.1	chr4	102585963	102586163	+	1	NA	NA	NA	-1495	NM_001177982	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.000000	0.407960	
mm_114490.1	chr13	69802298	69802498	+	1	NA	NA	NA	-7484	NM_138596	28077	Mm.52583	NM_138596	ENSMUSG00000021598	Med10	AA959813|AI385605|C78613|D13Wsu50e	mediator complex subunit 10	protein-coding	0.010000	0.497512	
mm_152793.1	chr19	21471181	21471381	-	1	NA	NA	NA	1380	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.010000	0.432836	
mm_92328.1	chr10	75780973	75781173	-	1	NA	NA	NA	341	NM_133994	103140	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding	0.060000	0.606965	
mm_117397.1	chr13	73689006	73689206	-	1	NA	NA	NA	-10720	NM_027780	71390	Mm.105251	NM_027780		Slc6a19os	5430425J12Rik	solute carrier family 6 (neurotransmitter transporter), member 19, opposite strand	protein-coding	0.010000	0.577114	
mm_22168.1	chr2	173062015	173062215	-	1	NA	NA	NA	40213	NM_019547	56190	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.015000	0.582090	
mm_54285.1	chr6	29216248	29216448	-	1	NA	NA	NA	16	NM_001302933	23917	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine 5'-phosphate dehydrogenase 1	protein-coding	0.080000	0.701493	
mm_77446.1	chr8	121792168	121792368	-	1	NA	NA	NA	37301	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.020000	0.497512	
mm_169428.1	chr14	53640534	53640734	+	1	NA	NA	NA	613295	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.487562	
mm_23255.1	chr3	51276755	51276955	+	1	NA	NA	NA	94	NR_073429	67746	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	0.150000	0.791045	
mm_107402.1	chr12	33348305	33348505	+	1	NA	NA	NA	45890	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.000000	0.388060	
mm_2959.1	chr1	132880229	132880429	+	1	NA	NA	NA	-26	NM_010732	16980	Mm.39640	NM_010732	ENSMUSG00000026443	Lrrn2	5730406J09Rik|NLRR-2	leucine rich repeat protein 2, neuronal	protein-coding	0.095000	0.716418	
mm_112815.1	chr13	20796290	20796490	+	1	NA	NA	NA	2277	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.363184	
mm_58361.1	chr6	148354495	148354695	-	1	NA	NA	NA	-61	NR_003634	66184	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	0.065000	0.611940	
mm_47706.1	chr5	129887323	129887523	-	1	NA	NA	NA	47	NM_024166	14004	Mm.30133	NM_024166	ENSMUSG00000070493	Chchd2	AL033347|Etohi6	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding	0.045000	0.532338	
mm_77008.1	chr8	107580969	107581169	-	1	NA	NA	NA	7413	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.040000	0.557214	
mm_111791.1	chr12	104864874	104865074	-	1	NA	NA	NA	102	NR_104436	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.150000	0.781095	
mm_17771.1	chr2	32823087	32823287	-	1	NA	NA	NA	24045	NM_009295	20910	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0.030000	0.537313	
mm_124667.1	chr15	6386672	6386872	+	1	NA	NA	NA	24	NM_001310446	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.070000	0.537313	63(GGCTATTTAAGT,-,0.00)
mm_39966.1	chr5	32138963	32139163	+	1	NA	NA	NA	2591	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.005000	0.482587	
mm_172837.1	chr9	26407497	26407697	-	1	NA	NA	NA	-326211	NM_001310766	76898	Mm.218788	NM_029792	ENSMUSG00000045994	B3gat1	0710007K08Rik|AI846286|GlcAT-P|Glcatp|Hnk1	beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	protein-coding	0.065000	0.656716	
mm_51679.1	chr6	86443711	86443911	+	1	NA	NA	NA	5165	NM_001243741	232196	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	0.000000	0.482587	
mm_91239.1	chr10	22306275	22306475	-	1	NA	NA	NA	-345	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.010000	0.462687	
mm_29578.1	chr3	117077665	117077865	-	1	NA	NA	NA	0	NR_038029	433646	Mm.158997	NR_038029	ENSMUSG00000028009	1700061I17Rik	-	RIKEN cDNA 1700061I17 gene	ncRNA	0.005000	0.487562	
mm_118305.1	chr13	113101037	113101237	-	1	NA	NA	NA	-156	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.015000	0.472637	
mm_121652.1	chr14	10331755	10331955	-	1	NA	NA	NA	121603	NM_001308286	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.000000	0.308458	
mm_63386.1	chr7	127214450	127214650	+	1	NA	NA	NA	2942	NM_016754	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.055000	0.567164	22(CCTCTTAGAGCC,+,0.00)
mm_124527.1	chr14	122233477	122233677	-	1	NA	NA	NA	61	NR_015532	68245	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.030000	0.597015	
mm_136033.1	chr16	77420194	77420394	-	1	NA	NA	NA	90966	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.010000	0.432836	
mm_85990.1	chr9	112187818	112188018	-	1	NA	NA	NA	8	NM_001177615	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.030000	0.497512	
mm_134686.1	chr16	22439492	22439692	-	1	NA	NA	NA	-22	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.140000	0.781095	
mm_25062.1	chr3	99140992	99141192	+	1	NA	NA	NA	2	NM_027462	70560	Mm.316754	NM_027462	ENSMUSG00000004233	Wars2	5730427B17Rik|9430020O07Rik|AI413375|TrpRS	tryptophanyl tRNA synthetase 2 (mitochondrial)	protein-coding	0.085000	0.646766	
mm_10241.1	chr2	8946835	8947035	+	1	NA	NA	NA	-242580	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.005000	0.368159	
mm_19147.1	chr2	80524607	80524807	-	1	NA	NA	NA	56475	NM_001290745	50884	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0.025000	0.472637	
mm_90832.1	chr10	8358241	8358441	-	1	NA	NA	NA	160484	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.010000	0.422886	
mm_69491.1	chr7	134221438	134221638	-	1	NA	NA	NA	3559	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.005000	0.412935	
mm_22799.1	chr3	23460962	23461162	+	1	NA	NA	NA	1209692	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0.010000	0.437811	
mm_108196.1	chr12	76792675	76792875	+	1	NA	NA	NA	2779	NM_030677	14776	Mm.441856	NM_030677	ENSMUSG00000042808	Gpx2	GI-GPx|GPx-GI|GSHPx-2|GSHPx-GI	glutathione peroxidase 2	protein-coding	0.050000	0.557214	-34(GGCCCTATGAGG,-,0.00)
mm_3839.1	chr1	160044393	160044593	+	1	NA	NA	NA	113	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.045000	0.611940	
mm_59750.1	chr7	28821919	28822119	+	1	NA	NA	NA	-3319	NM_016772	51798	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.005000	0.358209	29(CCTTTTAAATGC,+,0.00)
mm_81541.1	chr9	110245300	110245500	+	1	NA	NA	NA	1617	NM_001166273	29873	Mm.38496	NM_013884	ENSMUSG00000032482	Cspg5	Caleb|Ngc	chondroitin sulfate proteoglycan 5	protein-coding	0.160000	0.781095	
mm_64065.1	chr7	140857323	140857523	+	1	NA	NA	NA	26	NM_053194	101489	Mm.281916	NM_053194	ENSMUSG00000025485	Ric8a	AI114950|RIC-8|Ric8	RIC8 guanine nucleotide exchange factor A	protein-coding	0.080000	0.691542	
mm_137888.1	chr17	31679475	31679675	+	1	NA	NA	NA	1644	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.035000	0.532338	
mm_46786.1	chr5	112589911	112590111	-	1	NA	NA	NA	-15	NR_045397	67325	Mm.490791	NR_045396	ENSMUSG00000097962	1700034G24Rik	-	RIKEN cDNA 1700034G24 gene	ncRNA	0.005000	0.567164	
mm_74394.1	chr8	3176946	3177146	-	1	NA	NA	NA	102571	NM_010568	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.000000	0.328358	
mm_1244.1	chr1	62798108	62798308	+	1	NA	NA	NA	-3476	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.010000	0.447761	-48(GTTTTTAAACAG,+,0.00),47(GCATTTATAGAA,+,0.00)
mm_152412.1	chr19	10605369	10605569	-	1	NA	NA	NA	-156	NM_015735	13194	Mm.289915	NM_015735	ENSMUSG00000024740	Ddb1	127kDa|AA408517|p127-Ddb1	damage specific DNA binding protein 1	protein-coding	0.080000	0.666667	
mm_37126.1	chr4	116682895	116683095	-	1	NA	NA	NA	-2604	NM_011034	18477	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0.000000	0.393035	54(GTCTCTATAAAG,-,0.00)
mm_172504.1	chr7	68055049	68055249	+	1	NA	NA	NA	102892	NM_010513	16001	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.025000	0.582090	
mm_61348.1	chr7	68287092	68287292	+	1	NA	NA	NA	-10598	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.020000	0.482587	
mm_92377.1	chr10	76416693	76416893	-	1	NA	NA	NA	26119	NM_008787	18541	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	0.015000	0.457711	
mm_126479.1	chr15	81585260	81585460	+	1	NA	NA	NA	-854	NM_177821	328572	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.060000	0.666667	
mm_106021.1	chr11	116024000	116024200	-	1	NA	NA	NA	404	NM_008211	15081	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0.105000	0.716418	
mm_132446.1	chr16	35982998	35983198	+	1	NA	NA	NA	-265	NM_008465	16646	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0.030000	0.502488	
mm_172762.1	chr8	90933688	90933888	+	1	NA	NA	NA	1539	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.025000	0.457711	
mm_171602.1	chr4	147809686	147809886	-	1	NA	NA	NA	2	NM_001127189	100041677	Mm.327194	NM_001127189	ENSMUSG00000078495	Zfp984	Gm13157|OTTMUSG00000010679	zinc finger protein 984	protein-coding	0.035000	0.517413	
mm_122552.1	chr14	48742237	48742437	-	1	NA	NA	NA	73049	NR_029384	606497	Mm.165199	NR_029384	ENSMUSG00000098682	Otx2os1	-	orthodenticle homeobox 2 opposite strand 1	ncRNA	0.005000	0.552239	
mm_128256.1	chr15	36771088	36771288	-	1	NA	NA	NA	19744	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.015000	0.527363	
mm_47943.1	chr5	135394123	135394323	-	1	NA	NA	NA	323	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.135000	0.741294	
mm_87842.1	chr10	60400659	60400859	+	1	NA	NA	NA	1033	NM_001164374	100302688	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.010000	0.636816	
mm_119244.1	chr14	33590729	33590929	+	1	NA	NA	NA	1559	NM_008978	19256	Mm.8019	NM_008978	ENSMUSG00000021940	Ptpn20	typ	protein tyrosine phosphatase, non-receptor type 20	protein-coding	0.010000	0.328358	
mm_166930.1	chr7	34724960	34725160	+	1	NA	NA	NA	-72219	NM_146188	233107	Mm.486198	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	0.010000	0.562189	
mm_145399.1	chr18	57354622	57354822	+	1	NA	NA	NA	-11	NM_028447	73137	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	0.130000	0.751244	
mm_11533.1	chr2	32629391	32629591	+	1	NA	NA	NA	-9	NM_021515	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.010000	0.562189	
mm_140600.1	chr17	10319189	10319389	-	1	NA	NA	NA	72	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.190000	0.786070	
mm_28300.1	chr3	89188519	89188719	-	1	NA	NA	NA	5394	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.045000	0.616915	
mm_167213.1	chr8	3711364	3711564	+	1	NA	NA	NA	9187	NM_029465	75863	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	0.005000	0.407960	
mm_159965.1	chr6	91055565	91055765	-	1	NA	NA	NA	61161	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.010000	0.542289	
mm_142198.1	chr17	36958173	36958373	-	1	NA	NA	NA	155	NM_023162	66136	Mm.486229	NM_023162	ENSMUSG00000036315	Znrd1	1110014N07Rik|Rpa12	zinc ribbon domain containing, 1	protein-coding	0.035000	0.532338	
mm_28945.1	chr3	99352063	99352263	-	1	NA	NA	NA	98403	NM_009323	21384	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0.010000	0.552239	
mm_129469.1	chr15	78670442	78670642	-	1	NA	NA	NA	47571	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0.020000	0.621891	
mm_170760.1	chr2	159346017	159346217	+	1	NA	NA	NA	551310	NM_001291144	71715	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	0.040000	0.477612	-14(TGGTATATAAGA,-,0.00)
mm_21738.1	chr2	164777903	164778103	-	1	NA	NA	NA	1731	NM_009394	21925	Mm.1716	NM_009394	ENSMUSG00000017300	Tnnc2	Tncs	troponin C2, fast	protein-coding	0.040000	0.582090	
mm_42518.1	chr5	115545194	115545394	+	1	NA	NA	NA	-14173	NM_007475	11837	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.025000	0.597015	
mm_120133.1	chr14	60265102	60265302	+	1	NA	NA	NA	-3	NM_144843	219135	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	0.080000	0.631841	
mm_111290.1	chr12	85468547	85468747	-	1	NA	NA	NA	-5254	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.015000	0.393035	
mm_18632.1	chr2	69342485	69342685	-	1	NA	NA	NA	31	NM_021022	27413	Mm.439855	NM_021022	ENSMUSG00000027048	Abcb11	ABC16|Bsep|Lith1|PFIC2|PGY4|SPGP	ATP-binding cassette, sub-family B (MDR/TAP), member 11	protein-coding	0.015000	0.417910	
mm_31974.1	chr4	88353762	88353962	+	1	NA	NA	NA	85064	NM_025760	66775	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.005000	0.497512	
mm_124484.1	chr14	121698334	121698534	-	1	NA	NA	NA	-17	NM_001081039	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.020000	0.606965	
mm_86489.1	chr10	5548716	5548916	+	1	NA	NA	NA	1876	NM_153399	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.005000	0.572139	
mm_93303.1	chr10	96958694	96958894	-	1	NA	NA	NA	-76974	NR_045358	75301	Mm.108650	NR_045358		4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	0.005000	0.402985	
mm_103846.1	chr11	83067170	83067370	-	1	NA	NA	NA	2158	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.010000	0.507463	80(GGATTTAAGAGG,-,0.00)
mm_154505.1	chrM	11895	12095	-	1	NA	NA	NA	NA	NA									0.005000	0.293532	
mm_23194.1	chr3	41083339	41083539	+	1	NA	NA	NA	-393	NM_027558	70804	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0.155000	0.711443	
mm_26987.1	chr3	25698035	25698235	-	1	NA	NA	NA	455172	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.273632	
mm_41568.1	chr5	93159934	93160134	+	1	NA	NA	NA	46461	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.000000	0.293532	
mm_140375.1	chr17	86981021	86981221	+	1	NA	NA	NA	18010	NM_145491	104215	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.005000	0.512438	
mm_79892.1	chr9	65294467	65294667	+	1	NA	NA	NA	307	NM_011802	270166	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0.105000	0.691542	
mm_156018.1	chrX	107089594	107089794	+	1	NA	NA	NA	359	NM_172435	78826	Mm.74639	NM_172435	ENSMUSG00000050921	P2ry10	5830408N17Rik|Lypsr2|P2Y10	purinergic receptor P2Y, G-protein coupled 10	protein-coding	0.000000	0.388060	
mm_631.1	chr1	40324497	40324697	+	1	NA	NA	NA	-30	NM_133193	107527	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0.025000	0.542289	
mm_111576.1	chr12	101818859	101819059	-	1	NA	NA	NA	160	NM_011812	23876	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	0.035000	0.507463	
mm_141097.1	chr17	26004739	26004939	-	1	NA	NA	NA	17021	NM_153140	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.030000	0.621891	
mm_62651.1	chr7	107691750	107691950	+	1	NA	NA	NA	66182	NM_001205227	320635	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	0.010000	0.532338	
mm_112991.1	chr13	21717529	21717729	+	1	NA	NA	NA	1	NM_178206	319152	Mm.377874	NM_178206	ENSMUSG00000101355	Hist1h3h	H3-291	histone cluster 1, H3h	protein-coding	0.050000	0.532338	
mm_94420.1	chr11	5871537	5871737	+	1	NA	NA	NA	6619	NM_008894	18972	Mm.35788	NM_008894	ENSMUSG00000020471	Pold2	50kDa|p50|po1D2	polymerase (DNA directed), delta 2, regulatory subunit	protein-coding	0.015000	0.562189	
mm_139502.1	chr17	56303266	56303466	+	1	NA	NA	NA	29	NM_001111079	18140	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	0.050000	0.577114	
mm_45318.1	chr5	65453299	65453499	-	1	NA	NA	NA	-17557	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.020000	0.502488	
mm_152009.1	chr19	5951970	5952170	-	1	NA	NA	NA	12136	NM_001164057	18969	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0.050000	0.517413	63(CTATTAATAGCC,+,0.00)
mm_74315.1	chr8	126662846	126663046	+	1	NA	NA	NA	-69510	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.020000	0.537313	-50(GGGCTTATAAGG,-,0.00),-48(GCTTATAAGGGT,+,0.00)
mm_107152.1	chr12	24498504	24498704	+	1	NA	NA	NA	23	NR_028341	21340	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	0.075000	0.611940	
mm_87433.1	chr10	50969263	50969463	+	1	NA	NA	NA	73712	NM_011376	20464	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded homolog 1 (Drosophila)	protein-coding	0.000000	0.298507	15(GACCCTAAAAGT,-,0.00)
mm_40271.1	chr5	39798003	39798203	+	1	NA	NA	NA	-153472	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.035000	0.527363	
mm_152355.1	chr19	10060317	10060517	-	1	NA	NA	NA	18869	NM_021890	60527	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0.035000	0.512438	
mm_159160.1	chr2	90677303	90677503	+	1	NA	NA	NA	188	NM_021512	59015	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.005000	0.407960	
mm_95802.1	chr11	55109541	55109741	+	1	NA	NA	NA	11656	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.015000	0.577114	
mm_133074.1	chr16	58679613	58679813	+	1	NA	NA	NA	9505	NM_007757	12892	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0.000000	0.278607	
mm_169718.1	chr15	77775781	77775981	-	1	NA	NA	NA	-20652	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.015000	0.542289	
mm_170614.1	chr19	60769783	60769983	-	1	NA	NA	NA	4502	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.025000	0.427861	
mm_18016.1	chr2	38368919	38369119	-	1	NA	NA	NA	17711	NM_010710	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.060000	0.626866	
mm_121576.1	chr14	122912935	122913135	+	1	NA	NA	NA	130	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.110000	0.726368	
mm_166588.1	chr6	55336079	55336279	+	1	NA	NA	NA	-120	NM_007472	11826	Mm.18625	NM_007472	ENSMUSG00000004655	Aqp1	CHIP28	aquaporin 1	protein-coding	0.025000	0.626866	-7(GCCTATTAGAGC,-,0.00)
mm_49585.1	chr6	30642831	30643031	+	1	NA	NA	NA	3713	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.025000	0.522388	
mm_24345.1	chr3	89820085	89820285	+	1	NA	NA	NA	-11185	NM_172530	214547	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.020000	0.477612	
mm_9419.1	chr1	172329184	172329384	-	1	NA	NA	NA	-21	NM_008429	16524	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	0.025000	0.572139	
mm_128323.1	chr15	38059651	38059851	-	1	NA	NA	NA	19103	NM_001112721	70790	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.005000	0.338308	79(GGGCTTTAAAGA,-,0.00),80(GGCTTTAAAGAC,-,0.00)
mm_48821.1	chr5	149051284	149051484	-	1	NA	NA	NA	232	NM_001313894	15289	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.100000	0.621891	
mm_162684.1	chr10	13983682	13983882	-	1	NA	NA	NA	17403	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.045000	0.457711	
mm_169466.1	chr14	66044864	66045064	+	1	NA	NA	NA	32805	NM_009618	11495	Mm.422850	NM_009618	ENSMUSG00000022039	Adam2	AI323749|Ftnb|Ph30-beta	a disintegrin and metallopeptidase domain 2	protein-coding	0.075000	0.577114	-44(TTCTTTAAAAAG,-,0.00),-42(CTTTAAAAAGTG,+,0.00)
mm_15607.1	chr2	160731686	160731886	+	1	NA	NA	NA	476	NM_021280	18803	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.165000	0.810945	
mm_112923.1	chr13	20934575	20934775	+	1	NA	NA	NA	138624	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.005000	0.407960	
mm_2396.1	chr1	93685596	93685796	+	1	NA	NA	NA	121	NM_016778	51800	Mm.3295	NM_016778	ENSMUSG00000026278	Bok	matador|mtd	BCL2-related ovarian killer	protein-coding	0.140000	0.731343	
mm_11980.1	chr2	55292386	55292586	+	1	NA	NA	NA	-143484	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.015000	0.512438	
mm_77108.1	chr8	111081613	111081813	-	1	NA	NA	NA	-5	NM_181549	353287	Mm.135495	NM_181549	ENSMUSG00000033633	Clec18a	Mrcl	C-type lectin domain family 18, member A	protein-coding	0.020000	0.562189	
mm_52769.1	chr6	121183813	121184013	+	1	NA	NA	NA	246	NM_001304773	74043	Mm.491240	NM_028730	ENSMUSG00000067825	Pex26	4632428M11Rik	peroxisomal biogenesis factor 26	protein-coding	0.065000	0.606965	
mm_146358.1	chr18	82584017	82584217	+	1	NA	NA	NA	29609	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.040000	0.562189	
mm_156762.1	chrX	160505081	160505281	+	1	NA	NA	NA	2747	NM_001177878	110094	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	0.005000	0.447761	
mm_1006.1	chr1	58725940	58726140	+	1	NA	NA	NA	-4512	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.015000	0.457711	
mm_64265.1	chr7	141749828	141750028	+	1	NA	NA	NA	-39083	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.000000	0.432836	
mm_92213.1	chr10	68233210	68233410	-	1	NA	NA	NA	45416	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.010000	0.407960	
mm_84263.1	chr9	62537245	62537445	-	1	NA	NA	NA	-301	NM_175484	235431	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.020000	0.537313	
mm_8167.1	chr1	136960414	136960614	-	1	NA	NA	NA	-66	NM_030676	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	0.010000	0.432836	
mm_41623.1	chr5	96911665	96911865	+	1	NA	NA	NA	-9507	NR_131152	666266	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0.035000	0.532338	
mm_30891.1	chr4	32263787	32263987	+	1	NA	NA	NA	-153548	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.035000	0.507463	
mm_132112.1	chr16	31456568	31456768	+	1	NA	NA	NA	27915	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.055000	0.577114	
mm_158201.1	chrX	105374711	105374911	-	1	NA	NA	NA	16943	NR_015552	100043213	Mm.388967	NR_015552	ENSMUSG00000087620	5330434G04Rik	-	RIKEN cDNA 5330434G04 gene	ncRNA	0.000000	0.462687	
mm_172376.1	chr7	127397792	127397992	+	1	NA	NA	NA	-1024	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.040000	0.497512	
mm_67484.1	chr7	80713091	80713291	-	1	NA	NA	NA	-24314	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.015000	0.452736	-25(CCATTTAGAGAC,+,0.00)
mm_20844.1	chr2	148038194	148038394	-	1	NA	NA	NA	7170	NM_001291067	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.030000	0.532338	
mm_7333.1	chr1	105356546	105356746	-	1	NA	NA	NA	64	NM_178779	320311	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	0.085000	0.711443	
mm_47447.1	chr5	123482518	123482718	-	1	NA	NA	NA	-517	NM_029594	76399	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.010000	0.577114	
mm_126580.1	chr15	82292575	82292775	+	1	NA	NA	NA	-6309	NM_029066	74716	Mm.159315	NM_029066	ENSMUSG00000022455	Wbp2nl	4930521I23Rik|PAWP	WBP2 N-terminal like	protein-coding	0.000000	0.388060	
mm_149099.1	chr19	8941858	8942058	+	1	NA	NA	NA	38	NM_011842	23942	Mm.25339	NM_011842	ENSMUSG00000071646	Mta2	AW550797|Mata1l1|Mta1l1|mmta2	metastasis-associated gene family, member 2	protein-coding	0.120000	0.676617	
mm_36738.1	chr4	99655915	99656115	-	1	NA	NA	NA	-284	NM_010425	15221	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	0.080000	0.621891	
mm_166526.1	chr6	24598003	24598203	+	1	NA	NA	NA	332	NM_053098	93677	Mm.332941	NM_053098	ENSMUSG00000029683	Lmod2	C-Lmod	leiomodin 2 (cardiac)	protein-coding	0.030000	0.527363	
mm_118466.1	chr14	11553433	11553633	+	1	NA	NA	NA	-20	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.110000	0.676617	
mm_151701.1	chr19	4477040	4477240	-	1	NA	NA	NA	3	NM_134164	171180	Mm.262270	NM_134164	ENSMUSG00000049303	Syt12	-	synaptotagmin XII	protein-coding	0.135000	0.731343	
mm_25396.1	chr3	107230362	107230562	+	1	NA	NA	NA	-152	NM_001256174	319929	Mm.30453	NM_001256174	ENSMUSG00000094613	A630076J17Rik	-	RIKEN cDNA A630076J17 gene	protein-coding	0.010000	0.517413	
mm_172949.1	chr9	82592650	82592850	-	1	NA	NA	NA	-237056	NM_001168240	65099	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	0.000000	0.398010	
mm_266.1	chr1	20951498	20951698	+	1	NA	NA	NA	-28	NM_027974	71877	Mm.29178	NM_027974	ENSMUSG00000041809	Efhc1	1700029F22Rik|mRib72-1|myoclonin1	EF-hand domain (C-terminal) containing 1	protein-coding	0.065000	0.646766	
mm_86704.1	chr10	18613361	18613561	+	1	NA	NA	NA	-67385	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	0.005000	0.348259	
mm_24284.1	chr3	89231390	89231590	+	1	NA	NA	NA	2434	NM_013605	17829	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	0.030000	0.532338	
mm_45013.1	chr5	38527104	38527304	-	1	NA	NA	NA	-25052	NM_145559	117591	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.005000	0.407960	
mm_161911.1	chr18	65470343	65470543	+	1	NA	NA	NA	39446	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.467662	
mm_100794.1	chr11	4939837	4940037	-	1	NA	NA	NA	-7584	NM_001243043	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.010000	0.512438	
mm_134951.1	chr16	31301156	31301356	-	1	NA	NA	NA	13552	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.005000	0.482587	
mm_73471.1	chr8	106683016	106683216	+	1	NA	NA	NA	48	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.090000	0.676617	
mm_92510.1	chr10	78427378	78427578	-	1	NA	NA	NA	1808	NM_007793	13014	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	0.025000	0.462687	
mm_153565.1	chr19	42431685	42431885	-	1	NA	NA	NA	-2	NM_145123	72832	Mm.313558	NM_145123	ENSMUSG00000042401	Crtac1	2810454P21Rik|AW047536|Crtac1B|Lotus	cartilage acidic protein 1	protein-coding	0.125000	0.741294	
mm_57440.1	chr6	124962332	124962532	-	1	NA	NA	NA	2965	NM_012003	26894	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e	COP9 signalosome subunit 7A	protein-coding	0.015000	0.487562	
mm_44985.1	chr5	37434658	37434858	-	1	NA	NA	NA	96280	NM_145920	68525	Mm.25506	NM_145920	ENSMUSG00000050248	Evc2	1110017L09Rik|Lbn|limbin	Ellis van Creveld syndrome 2	protein-coding	0.000000	0.552239	
mm_152347.1	chr19	9984763	9984963	-	1	NA	NA	NA	2217	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.025000	0.482587	
mm_37902.1	chr4	132732333	132732533	-	1	NA	NA	NA	113	NM_201368	381560	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	0.060000	0.611940	
mm_85851.1	chr9	110654142	110654342	-	1	NA	NA	NA	-81	NM_183276	235627	Mm.335481	NM_183276	ENSMUSG00000056724	Nbeal2	1110014F23Rik|BC042396|mKIAA0540	neurobeachin-like 2	protein-coding	0.065000	0.676617	
mm_103253.1	chr11	70970999	70971199	-	1	NA	NA	NA	899	NM_001252415	69723	Mm.275691	NM_027186	ENSMUSG00000018449	Rpain	2400006N03Rik|Rip	RPA interacting protein	protein-coding	0.015000	0.447761	
mm_85675.1	chr9	107757434	107757634	-	1	NA	NA	NA	13468	NM_148930	83486	Mm.259197	NM_148930	ENSMUSG00000032580	Rbm5	D030069N10Rik	RNA binding motif protein 5	protein-coding	0.005000	0.417910	6(CCTTTTAAAATG,+,0.00)
mm_91116.1	chr10	19188410	19188610	-	1	NA	NA	NA	21272	NR_038022	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.015000	0.512438	
mm_129543.1	chr15	79396733	79396933	-	1	NA	NA	NA	6086	NM_001253817	223693	Mm.323358	NM_172608	ENSMUSG00000009035	Tmem184b	2610507A11|4732495E13Rik	transmembrane protein 184b	protein-coding	0.035000	0.587065	
mm_139797.1	chr17	66005607	66005807	+	1	NA	NA	NA	-54520	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.025000	0.552239	
mm_51078.1	chr6	66935769	66935969	+	1	NA	NA	NA	38978	NM_001177558	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.000000	0.343284	
mm_88482.1	chr10	77622269	77622469	+	1	NA	NA	NA	48	NM_019803	22213	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0.150000	0.711443	
mm_121568.1	chr14	122749268	122749468	+	1	NA	NA	NA	163797	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.000000	0.452736	
mm_102593.1	chr11	61930120	61930320	-	1	NA	NA	NA	37	NM_019921	56697	Mm.274404	NM_019921	ENSMUSG00000047804	Akap10	1500031L16Rik|B130049N18Rik|D-AKAP-2|D-AKAP2|PRKA10	A kinase (PRKA) anchor protein 10	protein-coding	0.125000	0.736318	
mm_162450.1	chr1	122357215	122357415	-	1	NA	NA	NA	-789335	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	0.055000	0.552239	
mm_67088.1	chr7	68285848	68286048	-	1	NA	NA	NA	-9354	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.020000	0.472637	
mm_44435.1	chr5	21055912	21056112	-	1	NA	NA	NA	-215	NM_011203	19248	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.105000	0.766169	
mm_159265.1	chr2	156174216	156174416	-	1	NA	NA	NA	5264	NM_001291115	170791	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.000000	0.363184	
mm_50975.1	chr6	61204747	61204947	+	1	NA	NA	NA	-24037	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA	0.015000	0.358209	
mm_5944.1	chr1	56782088	56782288	-	1	NA	NA	NA	-144737	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	0.060000	0.542289	
mm_89744.1	chr10	99107421	99107621	+	1	NA	NA	NA	350	NM_027740	382406	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.105000	0.716418	-28(GTTTAAAGAGCG,+,0.00)
mm_33732.1	chr4	134098806	134099006	+	1	NA	NA	NA	-3677	NR_045571	67586	Mm.282029	NM_026257	ENSMUSG00000012126	Ubxn11	4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5	UBX domain protein 11	protein-coding	0.020000	0.542289	
mm_159331.1	chr3	40846697	40846897	-	1	NA	NA	NA	57	NM_028140	72175	Mm.130610	NM_028140	ENSMUSG00000025759	Mfsd8	2810423E13Rik|AI836898|AV142426|Cln7	major facilitator superfamily domain containing 8	protein-coding	0.095000	0.646766	
mm_168134.1	chr10	27936260	27936460	+	1	NA	NA	NA	-138460	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0.020000	0.358209	
mm_103508.1	chr11	76617375	76617575	-	1	NA	NA	NA	-39736	NM_198894	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.005000	0.452736	
mm_112606.1	chr13	14509991	14510191	+	1	NA	NA	NA	13135	NM_001081348	94253	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.005000	0.462687	
mm_37027.1	chr4	114970414	114970614	-	1	NA	NA	NA	16714	NM_025647	66588	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	0.000000	0.313433	-70(TCATTTATAGCT,+,0.00)
mm_144790.1	chr18	35910233	35910433	+	1	NA	NA	NA	-54497	NM_028707	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.010000	0.527363	
mm_24341.1	chr3	89773269	89773469	+	1	NA	NA	NA	31	NR_130957	74034	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	0.130000	0.701493	
mm_83385.1	chr9	44582367	44582567	-	1	NA	NA	NA	-22425	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.030000	0.517413	
mm_122178.1	chr14	31553137	31553337	-	1	NA	NA	NA	24146	NM_009937	382864	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.010000	0.373134	32(CGATTTAAAAGA,-,0.00)
mm_35182.1	chr4	15958086	15958286	-	1	NA	NA	NA	219	NM_013752	27354	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	0.130000	0.736318	
mm_134421.1	chr16	17891569	17891769	-	1	NA	NA	NA	59	NM_010048	13356	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	0.130000	0.736318	
mm_21390.1	chr2	157560871	157561071	-	1	NA	NA	NA	893	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.025000	0.298507	
mm_94702.1	chr11	20225972	20226172	+	1	NA	NA	NA	23352	NM_172260	216543	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.015000	0.502488	
mm_163848.1	chr14	19418110	19418310	-	1	NA	NA	NA	184377	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.368159	
mm_37913.1	chr4	132782381	132782581	-	1	NA	NA	NA	13883	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.000000	0.467662	
mm_81053.1	chr9	105658346	105658546	+	1	NA	NA	NA	15451	NM_001081309	75669	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 4, p150	protein-coding	0.045000	0.592040	
mm_16465.1	chr2	180635006	180635206	+	1	NA	NA	NA	7585	NM_178254	277353	Mm.473700	NM_178254	ENSMUSG00000038932	Tcfl5	AV260129|Figlb|Sosf1	transcription factor-like 5 (basic helix-loop-helix)	protein-coding	0.015000	0.472637	
mm_78379.1	chr9	27790898	27791098	+	1	NA	NA	NA	-271	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.040000	0.611940	
mm_11130.1	chr2	28230252	28230452	+	1	NA	NA	NA	24663	NM_019498	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.040000	0.472637	
mm_157964.1	chrX	90744603	90744803	-	1	NA	NA	NA	-147439	NM_001101450	212952	Mm.477436	NM_001101450	ENSMUSG00000091497	Gm44	-	predicted gene 44	protein-coding	0.005000	0.447761	
mm_83474.1	chr9	45827195	45827395	-	1	NA	NA	NA	1343	NM_001081373	214552	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	0.010000	0.477612	
mm_123459.1	chr14	65592986	65593186	-	1	NA	NA	NA	26	NM_001253812	74195	Mm.29719	NM_028811	ENSMUSG00000022031	Elp3	2610507P14Rik|KAT9	elongator acetyltransferase complex subunit 3	protein-coding	0.075000	0.592040	
mm_71543.1	chr8	47675288	47675488	+	1	NA	NA	NA	-229	NM_023503	69260	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.100000	0.706468	-29(CCCTCTTAAAGG,-,0.00),-28(CCTCTTAAAGGG,+,0.00)
mm_40060.1	chr5	33996614	33996814	+	1	NA	NA	NA	730	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.175000	0.796020	
mm_108369.1	chr12	80816635	80816835	+	1	NA	NA	NA	26203	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.000000	0.492537	6(CTCTTTATGAGC,-,0.00)
mm_62216.1	chr7	98178277	98178477	+	1	NA	NA	NA	-103	NM_007602	12337	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0.055000	0.646766	
mm_75048.1	chr8	32874724	32874924	-	1	NA	NA	NA	75202	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding	0.005000	0.402985	
mm_39825.1	chr5	30797979	30798179	+	1	NA	NA	NA	-16562	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.030000	0.492537	
mm_125452.1	chr15	51877415	51877615	+	1	NA	NA	NA	74	NM_030132	78581	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	0.065000	0.532338	
mm_80432.1	chr9	77923170	77923370	+	1	NA	NA	NA	5905	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.015000	0.462687	-33(GCATTTAAAGGA,+,0.00)
mm_22592.1	chr3	13610410	13610610	+	1	NA	NA	NA	42355	NR_040598	75203	Mm.490940	NR_040598		4930539N22Rik	-	RIKEN cDNA 4930539N22 gene	ncRNA	0.000000	0.393035	
mm_44649.1	chr5	28209933	28210133	-	1	NA	NA	NA	135	NM_001310511	269637	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.065000	0.577114	
mm_96818.1	chr11	69994412	69994612	+	1	NA	NA	NA	-1254	NM_001291125	78246	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.020000	0.497512	
mm_149702.1	chr19	21396513	21396713	+	1	NA	NA	NA	76048	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.025000	0.388060	
mm_54235.1	chr6	28239198	28239398	-	1	NA	NA	NA	22303	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.010000	0.348259	-61(GATTATAAAAGG,-,0.00)
mm_62756.1	chr7	112023484	112023684	+	1	NA	NA	NA	78	NM_177249	74996	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	0.125000	0.751244	
mm_10318.1	chr2	11206011	11206211	+	1	NA	NA	NA	33729	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.005000	0.412935	-34(CAGTATAAATGC,-,0.00)
mm_7109.1	chr1	89931061	89931261	-	1	NA	NA	NA	15	NM_010262	14472	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.120000	0.666667	
mm_66599.1	chr7	45458303	45458503	-	1	NA	NA	NA	1483	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.010000	0.472637	50(TTTTTTAAAGCT,+,0.00)
mm_172155.1	chr6	42450647	42450847	+	1	NA	NA	NA	10270	NM_146444	258436	Mm.377501	NM_146444	ENSMUSG00000068574	Olfr458	MOR211-8P|MOR221-4|MOR257-4|Olfr301	olfactory receptor 458	protein-coding	0.035000	0.447761	
mm_62946.1	chr7	119526229	119526429	+	1	NA	NA	NA	64	NM_178758	272428	Mm.185183	NM_178758	ENSMUSG00000030972	Acsm5	C730019D22|C730027J19Rik	acyl-CoA synthetase medium-chain family member 5	protein-coding	0.010000	0.502488	
mm_119665.1	chr14	52304805	52305005	+	1	NA	NA	NA	219	NM_019721	56335	Mm.271759	NM_019721	ENSMUSG00000022160	Mettl3	2310024F18Rik|M6A|Spo8	methyltransferase like 3	protein-coding	0.085000	0.661692	
mm_114170.1	chr13	55472195	55472395	+	1	NA	NA	NA	5481	NR_105909	102465569		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0.145000	0.771144	
mm_137107.1	chr17	21962641	21962841	+	1	NA	NA	NA	182	NM_001025373	74670	Mm.26540	NM_001025373	ENSMUSG00000053347	Zfp943	4930432O21Rik	zinc finger prtoein 943	protein-coding	0.075000	0.646766	
mm_38736.1	chr4	145245565	145245765	-	1	NA	NA	NA	1205	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.010000	0.582090	
mm_423.1	chr1	34444781	34444981	+	1	NA	NA	NA	5052	NM_178601	27993	Mm.289667	NM_178601	ENSMUSG00000026127	Imp4	AA409888|AV031295|D1Wsu40e	IMP4, U3 small nucleolar ribonucleoprotein	protein-coding	0.025000	0.472637	
mm_140293.1	chr17	85620703	85620903	+	1	NA	NA	NA	-31	NM_011381	20473	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0.050000	0.512438	
mm_54515.1	chr6	35511966	35512166	-	1	NA	NA	NA	27822	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.417910	-59(TACTTTAAGAGG,-,0.00),-58(ACTTTAAGAGGG,+,0.00)
mm_43846.1	chr5	143235097	143235297	+	1	NA	NA	NA	34	NM_177681	231866	Mm.55211	NM_177681	ENSMUSG00000029587	Zfp12	C530015C18|Krox-7|Zfp-12|Znf12	zinc finger protein 12	protein-coding	0.115000	0.671642	
mm_90397.1	chr10	127324249	127324449	+	1	NA	NA	NA	622	NM_146011	216445	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.005000	0.467662	
mm_56167.1	chr6	87994082	87994282	-	1	NA	NA	NA	12499	NR_026990	434064	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	0.030000	0.616915	
mm_149951.1	chr19	27430049	27430249	+	1	NA	NA	NA	112	NR_027987	107372	Mm.17942	NM_175354		C030016D13Rik	AW413347	RIKEN cDNA C030016D13 gene	ncRNA	0.070000	0.542289	
mm_92197.1	chr10	68136492	68136692	-	1	NA	NA	NA	142134	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.055000	0.606965	
mm_100128.1	chr11	115933549	115933749	+	1	NA	NA	NA	-10	NM_020483	57230	Mm.267810	NM_020483	ENSMUSG00000020755	Sap30bp	2700016D05Rik|Hcngp	SAP30 binding protein	protein-coding	0.055000	0.502488	
mm_100793.1	chr11	4939714	4939914	-	1	NA	NA	NA	-7707	NM_001243043	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.025000	0.537313	
mm_119066.1	chr14	30825510	30825710	+	1	NA	NA	NA	16	NM_028839	69179	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	0.140000	0.736318	
mm_147025.1	chr18	34651622	34651822	-	1	NA	NA	NA	14	NM_178347	52563	Mm.196638	NM_178347	ENSMUSG00000024370	Cdc23	6030435O18|D18Ertd243e	CDC23 cell division cycle 23	protein-coding	0.085000	0.572139	
mm_104033.1	chr11	86257463	86257663	-	1	NA	NA	NA	5	NM_027421	70422	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0.080000	0.626866	
mm_164176.1	chr15	76199285	76199485	-	1	NA	NA	NA	21	NM_201392	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.030000	0.587065	
mm_26774.1	chr3	8964284	8964484	-	1	NA	NA	NA	-330	NM_001025261	21985	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.025000	0.477612	
mm_22753.1	chr3	19972531	19972731	+	1	NA	NA	NA	15577	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.010000	0.412935	
mm_98753.1	chr11	96545379	96545579	+	1	NA	NA	NA	80888	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.005000	0.368159	
mm_7178.1	chr1	92473668	92473868	-	1	NA	NA	NA	-10	NM_024197	67273	Mm.248778	NM_024197	ENSMUSG00000026260	Ndufa10	2900053E13Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10	protein-coding	0.140000	0.666667	
mm_46062.1	chr5	92263565	92263765	-	1	NA	NA	NA	-10506	NM_011148	19023	Mm.87155	NM_011148	ENSMUSG00000029410	Ppef2	-	protein phosphatase, EF hand calcium-binding domain 2	protein-coding	0.030000	0.527363	
mm_135951.1	chr16	74411773	74411973	-	1	NA	NA	NA	-961	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.045000	0.646766	
mm_61390.1	chr7	73108185	73108385	+	1	NA	NA	NA	-6217	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	0.010000	0.427861	54(GTTTTTAAACGA,+,0.00)
mm_29467.1	chr3	113593033	113593233	-	1	NA	NA	NA	-15383	NM_001110505	11722	Mm.439727	NM_007446	ENSMUSG00000074264	Amy1	Amy-1|Amy1a|C030014B17Rik	amylase 1, salivary	protein-coding	0.000000	0.303483	
mm_105875.1	chr11	114923763	114923963	-	1	NA	NA	NA	10523	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.015000	0.527363	
mm_114946.1	chr13	96565307	96565507	+	1	NA	NA	NA	22672	NM_023420	68018	Mm.24125	NM_023420	ENSMUSG00000021669	Col4a3bp	2810404O15Rik|9230101K08Rik|AU016711|CERT|GPBP	collagen, type IV, alpha 3 (Goodpasture antigen) binding protein	protein-coding	0.000000	0.288557	-55(CTGTATATAAAC,-,0.00)
mm_17645.1	chr2	31460338	31460538	-	1	NA	NA	NA	-9832	NM_007494	11898	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.050000	0.587065	
mm_90989.1	chr10	13869666	13869866	-	1	NA	NA	NA	-809	NM_001347362	66253	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	0.010000	0.437811	
mm_87429.1	chr10	50819491	50819691	+	1	NA	NA	NA	-76060	NM_011376	20464	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded homolog 1 (Drosophila)	protein-coding	0.000000	0.358209	-4(GGCCTTTAGAGC,-,0.00),-3(GCCTTTAGAGCT,+,0.00)
mm_131711.1	chr16	20866910	20867110	+	1	NA	NA	NA	-132499	NM_009379	21832	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.000000	0.412935	-35(GAGTATATAAAG,-,0.00),-33(GTATATAAAGGC,+,0.00),-33(GTATATAAAGGC,-,0.00)
mm_149708.1	chr19	21653019	21653219	+	1	NA	NA	NA	-190	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.090000	0.651741	
mm_83068.1	chr9	37607558	37607758	-	1	NA	NA	NA	6062	NM_011449	20686	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	0.010000	0.333333	83(ATCTATAAAAGA,-,0.00)
mm_155074.1	chrX	45090830	45091030	+	1	NA	NA	NA	26	NM_026841	68800	Mm.336041	NM_026841	ENSMUSG00000037086	Prr32	1110059M19Rik	proline rich 32	protein-coding	0.005000	0.432836	
mm_46985.1	chr5	115312799	115312999	-	1	NA	NA	NA	11779	NR_131932	102639268	Mm.319998	NR_131932		Gm13830	OTTMUSG00000014646	predicted gene 13830	ncRNA	0.010000	0.497512	-35(GGCTTTAAATGT,-,0.00)
mm_62791.1	chr7	112679329	112679529	+	1	NA	NA	NA	109	NM_009346	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.185000	0.786070	
mm_6484.1	chr1	74108204	74108404	-	1	NA	NA	NA	16143	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.005000	0.572139	
mm_139907.1	chr17	70873431	70873631	+	1	NA	NA	NA	-19999	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.040000	0.467662	
mm_116717.1	chr13	51569352	51569552	-	1	NA	NA	NA	-2368	NM_009167	20418	Mm.131870	NM_009167	ENSMUSG00000021448	Shc3	N-Shc|Rai|ShcC	src homology 2 domain-containing transforming protein C3	protein-coding	0.050000	0.512438	
mm_105778.1	chr11	109722080	109722280	-	1	NA	NA	NA	76	NM_153782	208659	Mm.208662	NM_153782	ENSMUSG00000020614	Fam20a	AI606893	family with sequence similarity 20, member A	protein-coding	0.060000	0.641791	
mm_12803.1	chr2	80159035	80159235	+	1	NA	NA	NA	-29723	NM_001159582	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.010000	0.383085	
mm_32224.1	chr4	101717768	101717968	+	1	NA	NA	NA	461	NM_010704	16847	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.045000	0.547264	1(CTCCTTTAAAAG,-,0.00),2(TCCTTTAAAAGG,-,0.00),3(CCTTTAAAAGGA,+,0.00)
mm_52820.1	chr6	121356703	121356903	+	1	NA	NA	NA	10106	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.025000	0.552239	
mm_137105.1	chr17	21733613	21733813	+	1	NA	NA	NA	-11	NM_001164676	381067	Mm.482723	NM_001164676	ENSMUSG00000061544	Zfp229	-	zinc finger protein 229	protein-coding	0.035000	0.517413	
mm_143242.1	chr17	63702473	63702673	-	1	NA	NA	NA	-161408	NM_001037997	14158	Mm.23039	NM_008000	ENSMUSG00000000127	Fer	AV082135|C330004K01Rik|Fert|Fert2	fer (fms/fps related) protein kinase	protein-coding	0.040000	0.462687	-29(GAGTCTAAAAGG,-,0.00)
mm_72774.1	chr8	86286859	86287059	+	1	NA	NA	NA	279631	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	0.020000	0.487562	
mm_167574.1	chr9	44379088	44379288	-	1	NA	NA	NA	-302	NM_021395	12282	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	0.085000	0.587065	
mm_11385.1	chr2	31293090	31293290	+	1	NA	NA	NA	47267	NM_019681	14299	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.015000	0.398010	
mm_2063.1	chr1	87594451	87594651	+	1	NA	NA	NA	1	NM_015750	23956	Mm.143717	NM_015750	ENSMUSG00000079434	Neu2	MBS|MSS|MTS	neuraminidase 2	protein-coding	0.010000	0.497512	
mm_170363.1	chr1	85270389	85270589	-	1	NA	NA	NA	77	NM_175219	620078	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik|OTTMUSG00000029174	RIKEN cDNA C130026I21 gene	protein-coding	0.015000	0.492537	
mm_6727.1	chr1	82586968	82587168	-	1	NA	NA	NA	147	NM_007734	12828	Mm.389135	NM_007734	ENSMUSG00000079465	Col4a3	[a]3(IV)|alpha3(IV)	collagen, type IV, alpha 3	protein-coding	0.035000	0.601990	
mm_122086.1	chr14	30624948	30625148	-	1	NA	NA	NA	1160	NM_011103	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.015000	0.597015	
mm_518.1	chr1	37491881	37492081	+	1	NA	NA	NA	-3376	NR_024017	77633	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.025000	0.462687	
mm_60185.1	chr7	43221667	43221867	+	1	NA	NA	NA	7728	NM_001177525	100170401		NM_001177525		EU599041	TU7	expressed sequence EU599041	protein-coding	0.005000	0.308458	-65(GTTTTTATAGTT,+,0.00)
mm_17121.1	chr2	24608008	24608208	-	1	NA	NA	NA	-132509	NM_011040	18510	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0.025000	0.611940	
mm_162414.1	chr1	87449185	87449385	+	1	NA	NA	NA	-20979	NM_028473	73234	Mm.7310	NM_028473	ENSMUSG00000026258	3110079O15Rik	Snorc	RIKEN cDNA 3110079O15 gene	protein-coding	0.005000	0.462687	
mm_140611.1	chr17	10840013	10840213	-	1	NA	NA	NA	78	NM_027032	69310	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.035000	0.567164	-33(GCTCTTAGAGAC,+,0.00)
mm_4028.1	chr1	165767642	165767842	+	1	NA	NA	NA	3962	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.000000	0.616915	
mm_101040.1	chr11	8605197	8605397	-	1	NA	NA	NA	59238	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.020000	0.507463	
mm_8705.1	chr1	158828834	158829034	-	1	NA	NA	NA	128504	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding	0.000000	0.268657	
mm_114180.1	chr13	55639779	55639979	+	1	NA	NA	NA	4880	NM_001282055	212880	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	0.075000	0.601990	
mm_155024.1	chrX	42066479	42066679	+	1	NA	NA	NA	-1257	NM_009688	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.010000	0.467662	
mm_3462.1	chr1	150104182	150104382	+	1	NA	NA	NA	4251	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.015000	0.412935	
mm_32906.1	chr4	119109205	119109405	+	1	NA	NA	NA	560	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.085000	0.726368	
mm_86530.1	chr10	7832334	7832534	+	1	NA	NA	NA	-36	NM_172785	237256	Mm.140055	NM_172785	ENSMUSG00000039981	Zc3h12d	D730019B10Rik|TFL	zinc finger CCCH type containing 12D	protein-coding	0.020000	0.597015	
mm_159728.1	chr5	43602025	43602225	+	1	NA	NA	NA	203	NM_175425	109323	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	0.005000	0.427861	
mm_56542.1	chr6	99726220	99726420	-	1	NA	NA	NA	72	NM_001037539	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.130000	0.726368	
mm_148590.1	chr19	5069175	5069375	+	1	NA	NA	NA	1197	NM_054042	70445	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.000000	0.577114	75(CCCTATAGGCCC,+,0.00)
mm_50185.1	chr6	41641644	41641844	+	1	NA	NA	NA	-5339	NM_022413	64177	Mm.296889	NM_022413	ENSMUSG00000029868	Trpv6	CAT|CaT1|Cac|Ecac2|Otrpc3	transient receptor potential cation channel, subfamily V, member 6	protein-coding	0.010000	0.532338	
mm_110793.1	chr12	72085279	72085479	-	1	NA	NA	NA	-66	NM_026038	67217	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	0.065000	0.621891	
mm_143609.1	chr17	78684165	78684365	-	1	NA	NA	NA	52295	NM_011500	268980	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	0.015000	0.398010	-61(GCTTTTCAAGTG,+,0.00)
mm_68697.1	chr7	119620251	119620451	-	1	NA	NA	NA	2523	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.000000	0.457711	40(CCTTTTCAACAC,+,0.00)
mm_163967.1	chr14	54966543	54966743	-	1	NA	NA	NA	-36	NM_010856	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.000000	0.572139	34(GGATATAAAGGG,-,0.00)
mm_153800.1	chr19	46039469	46039669	-	1	NA	NA	NA	52	NM_010697	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.065000	0.696517	
mm_50454.1	chr6	48906440	48906640	+	1	NA	NA	NA	1554	NM_001161621	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.035000	0.472637	
mm_2212.1	chr1	89738118	89738318	+	1	NA	NA	NA	-54326	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.005000	0.482587	
mm_140752.1	chr17	17196013	17196213	-	1	NA	NA	NA	74730	NM_011765	22759	Mm.436633	NM_011765	ENSMUSG00000095990	Zfp97	NGD16-4	zinc finger protein 97	protein-coding	0.010000	0.447761	
mm_103509.1	chr11	76622138	76622338	-	1	NA	NA	NA	-44499	NM_198894	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.065000	0.626866	
mm_55384.1	chr6	59016756	59016956	-	1	NA	NA	NA	7646	NM_153574	58909	Mm.28813	NM_153574	ENSMUSG00000037709	Fam13a	AI462012|D430015B01Rik|FAM13A1|Precm1	family with sequence similarity 13, member A	protein-coding	0.000000	0.457711	
mm_89098.1	chr10	84534096	84534296	+	1	NA	NA	NA	-308	NM_175451	216197	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.110000	0.771144	
mm_36064.1	chr4	57916133	57916333	-	1	NA	NA	NA	31	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.040000	0.557214	
mm_97286.1	chr11	76201965	76202165	+	1	NA	NA	NA	9	NM_027773	116972	Mm.188413	NM_027773	ENSMUSG00000069808	Fam57a	2310047D13Rik|4932415L08Rik|5430402E13Rik|5430420K21Rik|Wdt3	family with sequence similarity 57, member A	protein-coding	0.165000	0.781095	
mm_94564.1	chr11	11685609	11685809	+	1	NA	NA	NA	-216	NM_009578	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.180000	0.835821	
mm_96588.1	chr11	69089877	69090077	+	1	NA	NA	NA	1449	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.010000	0.562189	
mm_38778.1	chr4	148068436	148068636	-	1	NA	NA	NA	19528	NM_009642	11610	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.055000	0.562189	
mm_80431.1	chr9	77921814	77922014	+	1	NA	NA	NA	4549	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.005000	0.437811	
mm_102916.1	chr11	69581103	69581303	-	1	NA	NA	NA	844	NM_001127233	22059	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.070000	0.572139	
mm_109695.1	chr12	113151950	113152150	+	1	NA	NA	NA	38	NM_007763	12925	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	0.055000	0.661692	-59(GGGCCTTAAAGG,-,0.00),-58(GGCCTTAAAGGG,-,0.00),-57(GCCTTAAAGGGC,+,0.00),-56(CCTTAAAGGGCA,+,0.00)
mm_128226.1	chr15	36555438	36555638	-	1	NA	NA	NA	30	NM_001347022	66696	Mm.253627	NM_025712	ENSMUSG00000013611	Snx31	4631426E05Rik	sorting nexin 31	protein-coding	0.070000	0.691542	
mm_15091.1	chr2	153278576	153278776	+	1	NA	NA	NA	-12740	NM_008444	16569	Mm.315560	NM_008444	ENSMUSG00000027475	Kif3b	AI854312|AW549267|mKIAA0359	kinesin family member 3B	protein-coding	0.010000	0.597015	
mm_158354.1	chrX	134589902	134590102	-	1	NA	NA	NA	4348	NM_019865	19982	Mm.286408	NM_019865	ENSMUSG00000079435	Rpl36a	L44L|Rpl44	ribosomal protein L36A	protein-coding	0.010000	0.502488	78(GACCTTAAAAAC,-,0.00),80(CCTTAAAAACTC,+,0.00)
mm_132700.1	chr16	43363627	43363827	+	1	NA	NA	NA	56469	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.015000	0.378109	
mm_159903.1	chr6	40490950	40491150	+	1	NA	NA	NA	-188	NM_001025385	574417	Mm.386354	NM_001025385	ENSMUSG00000052850	Tas2r137	T2R37|Tas2r3|mt2r41	taste receptor, type 2, member 137	protein-coding	0.000000	0.422886	
mm_144881.1	chr18	36795015	36795215	+	1	NA	NA	NA	1192	NM_025594	66492	Mm.251155	NM_025594	ENSMUSG00000001383	Zmat2	2610510D14Rik|2900082I05Rik	zinc finger, matrin type 2	protein-coding	0.025000	0.517413	
mm_46335.1	chr5	101835508	101835708	-	1	NA	NA	NA	70478	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.010000	0.358209	
mm_137788.1	chr17	29614722	29614922	+	1	NA	NA	NA	33	NM_021419	58230	Mm.305994	NM_021419	ENSMUSG00000090083	Rnf8	3830404E21Rik|AIP37|laXp180	ring finger protein 8	protein-coding	0.120000	0.676617	
mm_95040.1	chr11	32276501	32276701	+	1	NA	NA	NA	1	NM_010405	15126	Mm.141758	NM_010405	ENSMUSG00000055609	Hba-x	AI450015|Hbz	hemoglobin X, alpha-like embryonic chain in Hba complex	protein-coding	0.005000	0.562189	-34(GTGTATATAAAG,-,0.00)
mm_173323.1	chrY	90736939	90737139	+	1	NA	NA	NA	18011	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.477612	
mm_55437.1	chr6	67029731	67029931	-	1	NA	NA	NA	-6768	NR_040278	320172	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0.010000	0.492537	
mm_153458.1	chr19	41214447	41214647	-	1	NA	NA	NA	-7773	NM_011904	24087	Mm.89983	NM_011904	ENSMUSG00000025013	Tll2	-	tolloid-like 2	protein-coding	0.005000	0.298507	
mm_68020.1	chr7	100964224	100964424	-	1	NA	NA	NA	42	NM_183168	233571	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.010000	0.572139	
mm_164305.1	chr15	103897337	103897537	+	1	NA	NA	NA	1863	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.025000	0.407960	
mm_64501.1	chr7	143475104	143475304	+	1	NA	NA	NA	88	NM_001042760	18400	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0.040000	0.597015	
mm_64283.1	chr7	141838974	141839174	+	1	NA	NA	NA	2	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.010000	0.626866	
mm_151307.1	chr19	55743018	55743218	+	1	NA	NA	NA	1308	NM_001142923	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.120000	0.701493	-24(GGCTCTTTAAGG,-,0.00),-22(CTCTTTAAGGGG,+,0.00),-21(TCTTTAAGGGGC,+,0.00)
mm_32107.1	chr4	98922833	98923033	+	1	NA	NA	NA	-877	NM_001301414	230484	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	0.070000	0.597015	
mm_95357.1	chr11	48838593	48838793	+	1	NA	NA	NA	688	NM_001347436	94089	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.020000	0.512438	
mm_46913.1	chr5	114380393	114380593	-	1	NA	NA	NA	12	NM_001159941	330171	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	0.100000	0.686567	-91(CGCTTTAAGAAG,-,0.00)
mm_665.1	chr1	40444779	40444979	+	1	NA	NA	NA	5250	NM_010743	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.015000	0.502488	
mm_139905.1	chr17	70870653	70870853	+	1	NA	NA	NA	-17221	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.010000	0.512438	
mm_107528.1	chr12	40480666	40480866	+	1	NA	NA	NA	34713	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.000000	0.293532	
mm_72617.1	chr8	84636265	84636465	+	1	NA	NA	NA	26487	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.005000	0.562189	
mm_134207.1	chr16	11155006	11155206	-	1	NA	NA	NA	-20574	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.005000	0.482587	
mm_43586.1	chr5	137747525	137747725	+	1	NA	NA	NA	1656	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.030000	0.696517	
mm_58086.1	chr6	136967546	136967746	-	1	NA	NA	NA	13123	NM_023898	78600	Mm.290622	NM_023898	ENSMUSG00000064330	Pde6h	A930033D18Rik|PDEgamma	phosphodiesterase 6H, cGMP-specific, cone, gamma	protein-coding	0.010000	0.517413	
mm_127614.1	chr15	102460274	102460474	+	1	NA	NA	NA	1204	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.025000	0.502488	
mm_69027.1	chr7	126795615	126795815	-	1	NA	NA	NA	-3244	NM_019674	56420	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|Ppx	protein phosphatase 4, catalytic subunit	protein-coding	0.015000	0.582090	30(TGCTCTAAAGGC,-,0.00),31(GCTCTAAAGGCC,+,0.00)
mm_66690.1	chr7	45870875	45871075	-	1	NA	NA	NA	-1865	NM_133950	68137	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	0.060000	0.661692	
mm_149840.1	chr19	25004559	25004759	+	1	NA	NA	NA	5130	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.025000	0.363184	
mm_117712.1	chr13	95223359	95223559	-	1	NA	NA	NA	-409	NM_001170669	218461	Mm.100167	NM_172263	ENSMUSG00000021684	Pde8b	B230331L10Rik|C030047E14Rik	phosphodiesterase 8B	protein-coding	0.005000	0.552239	
mm_85808.1	chr9	110330452	110330652	-	1	NA	NA	NA	-2736	NM_001103162	235623	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0.030000	0.547264	
mm_10767.1	chr2	24186682	24186882	+	1	NA	NA	NA	306	NM_153511	215257	Mm.249379	NM_153511	ENSMUSG00000044103	Il1f9	Il36g	interleukin 1 family, member 9	protein-coding	0.015000	0.502488	
mm_50844.1	chr6	54824694	54824894	+	1	NA	NA	NA	7878	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.010000	0.517413	
mm_172691.1	chr8	60056627	60056827	+	1	NA	NA	NA	231078	NR_126087	75017	Mm.60775	NR_126087	ENSMUSG00000110406	4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA	0.045000	0.606965	
mm_8941.1	chr1	164437851	164438051	-	1	NA	NA	NA	20404	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.025000	0.407960	
mm_35414.1	chr4	34882842	34883042	-	1	NA	NA	NA	6	NM_013889	30046	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	0.150000	0.726368	
mm_8477.1	chr1	153487576	153487776	-	1	NA	NA	NA	-16	NM_007842	13211	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.120000	0.686567	
mm_170599.1	chr19	5802325	5802525	-	1	NA	NA	NA	247	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.010000	0.333333	72(AGTTCTAAAAGG,-,0.00)
mm_122922.1	chr14	54960782	54960982	-	1	NA	NA	NA	5725	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.025000	0.537313	
mm_51157.1	chr6	70722460	70722660	+	1	NA	NA	NA	69615	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.025000	0.482587	
mm_7393.1	chr1	111881235	111881435	-	1	NA	NA	NA	-16417	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0.020000	0.368159	
mm_77163.1	chr8	111688442	111688642	-	1	NA	NA	NA	1132	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.025000	0.582090	
mm_163915.1	chr14	35568397	35568597	+	1	NA	NA	NA	243481	NM_001033766	239036	Mm.239970	NM_001033766	ENSMUSG00000041068	4930596D02Rik	-	RIKEN cDNA 4930596D02 gene	protein-coding	0.000000	0.417910	
mm_114958.1	chr13	97071244	97071444	+	1	NA	NA	NA	-299	NM_001100458	320557	Mm.458280	NM_001100458	ENSMUSG00000041817	Fam169a	B230112C05Rik|SLAP75	family with sequence similarity 169, member A	protein-coding	0.145000	0.701493	-38(GACCTTAAAGGA,-,0.00),40(TCTTTAATACGG,+,0.00)
mm_141764.1	chr17	34269309	34269509	-	1	NA	NA	NA	6182	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.015000	0.462687	
mm_96686.1	chr11	69585936	69586136	+	1	NA	NA	NA	5677	NM_001127233	22059	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.005000	0.507463	
mm_110187.1	chr12	27339102	27339302	-	1	NA	NA	NA	3516	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.075000	0.676617	
mm_72519.1	chr8	83955612	83955812	+	1	NA	NA	NA	18	NM_024184	66929	Mm.29680	NM_024184	ENSMUSG00000005470	Asf1b	1700003K02Rik|AA409591	anti-silencing function 1B histone chaperone	protein-coding	0.085000	0.616915	
mm_93562.1	chr10	116517869	116518069	-	1	NA	NA	NA	-44446	NM_021452	58802	Mm.440652	NM_021452	ENSMUSG00000054934	Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding	0.015000	0.353234	-74(GTTTATAAATGG,-,0.00),-49(CTGTCTATAAAG,-,0.00)
mm_134256.1	chr16	13730590	13730790	-	1	NA	NA	NA	-206	NM_011987	26565	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	0.030000	0.492537	
mm_8070.1	chr1	135495426	135495626	-	1	NA	NA	NA	-40843	NR_049188	100885827		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0.005000	0.417910	
mm_88516.1	chr10	78049848	78050048	+	1	NA	NA	NA	-11	NM_001284197	54427	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.040000	0.562189	
mm_171704.1	chr4	74643680	74643880	-	1	NA	NA	NA	391901	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.060000	0.621891	
mm_31291.1	chr4	45972140	45972340	+	1	NA	NA	NA	-57	NM_146142	100121	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.140000	0.721393	
mm_89292.1	chr10	87906828	87907028	+	1	NA	NA	NA	45817	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.000000	0.437811	
mm_35183.1	chr4	15958219	15958419	-	1	NA	NA	NA	352	NM_013752	27354	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	0.095000	0.701493	
mm_58413.1	chr7	3289416	3289616	+	1	NA	NA	NA	478	NM_001093764	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.035000	0.477612	
mm_133585.1	chr16	91420800	91421000	+	1	NA	NA	NA	14665	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.005000	0.497512	
mm_90952.1	chr10	13192665	13192865	-	1	NA	NA	NA	372	NM_181470	353258	Mm.117581	NM_181470	ENSMUSG00000019814	Ltv1	2610020N02Rik	LTV1 ribosome biogenesis factor	protein-coding	0.040000	0.517413	
mm_140959.1	chr17	24640619	24640819	-	1	NA	NA	NA	4238	NM_023449	65962	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0.050000	0.552239	
mm_67244.1	chr7	75309042	75309242	-	1	NA	NA	NA	120	NM_153579	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.035000	0.611940	
mm_20604.1	chr2	131443353	131443553	-	1	NA	NA	NA	-48409	NM_001177834	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.005000	0.442786	
mm_55559.1	chr6	71341149	71341349	-	1	NA	NA	NA	18437	NM_009858	12526	Mm.333148	NM_009858	ENSMUSG00000053044	Cd8b1	Cd8b|Ly-3|Ly-C|Lyt-3	CD8 antigen, beta chain 1	protein-coding	0.025000	0.542289	
mm_137111.1	chr17	22081139	22081339	+	1	NA	NA	NA	84738	NM_177596	210853	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	0.110000	0.726368	
mm_122530.1	chr14	47381576	47381776	-	1	NA	NA	NA	7816	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.015000	0.452736	
mm_153644.1	chr19	44231581	44231781	-	1	NA	NA	NA	28393	NM_024450	30049	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	0.005000	0.407960	
mm_10022.1	chr1	192092271	192092471	-	1	NA	NA	NA	228	NM_011633	22033	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.100000	0.621891	
mm_25706.1	chr3	122504563	122504763	+	1	NA	NA	NA	37018	NR_106117	102465764		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.035000	0.562189	
mm_116233.1	chr13	33566147	33566347	-	1	NA	NA	NA	2622	NR_131140	619715	Mm.390575	NR_131140		Gm6093	EG619715	predicted gene 6093	ncRNA	0.010000	0.492537	-38(GACCATAAAAGG,-,0.00),-36(CCATAAAAGGGC,+,0.00)
mm_52656.1	chr6	117862986	117863186	+	1	NA	NA	NA	9	NM_001001792	22685	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0.055000	0.606965	
mm_168969.1	chr1	28288728	28288928	+	1	NA	NA	NA	491424	NM_001013750	210962	Mm.214178	NM_001013750	ENSMUSG00000048411	Gm597	-	predicted gene 597	protein-coding	0.045000	0.641791	
mm_41043.1	chr5	86091236	86091436	+	1	NA	NA	NA	19590	NM_001310639	56792	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.010000	0.497512	
mm_87828.1	chr10	60358009	60358209	+	1	NA	NA	NA	11258	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.035000	0.547264	
mm_125817.1	chr15	74955520	74955720	+	1	NA	NA	NA	514	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.060000	0.651741	
mm_3821.1	chr1	159268419	159268619	+	1	NA	NA	NA	-25254	NR_144489	100846986		NR_144489		Pou5f1-rs1	Gm21053|Oct4P2|Otf-3rs|Otf3-rs1|Otf3a	POU domain, class 5, transcription factor 1, related sequence 1	pseudo	0.020000	0.338308	
mm_76910.1	chr8	105901073	105901273	-	1	NA	NA	NA	699	NM_173432	244631	Mm.27627	NM_173432	ENSMUSG00000048310	Pskh1	AW539964|E130013P03Rik|b2b1230Clo	protein serine kinase H1	protein-coding	0.035000	0.477612	
mm_114068.1	chr13	54381990	54382190	+	1	NA	NA	NA	10741	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.005000	0.577114	
mm_144030.1	chr17	90037096	90037296	-	1	NA	NA	NA	51172	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.035000	0.512438	
mm_100215.1	chr11	116918805	116919005	+	1	NA	NA	NA	42	NM_172948	268510	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	0.170000	0.766169	
mm_90665.1	chr10	128821659	128821859	+	1	NA	NA	NA	-12	NM_025364	66118	Mm.235562	NM_025364	ENSMUSG00000078427	Sarnp	1110005A23Rik|Cip29	SAP domain containing ribonucleoprotein	protein-coding	0.070000	0.577114	2(CTTTTTAGAGAG,+,0.00)
mm_106839.1	chr12	8006626	8006826	+	1	NA	NA	NA	29049	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.492537	
mm_52554.1	chr6	115995041	115995241	+	1	NA	NA	NA	-136	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.075000	0.636816	
mm_53895.1	chr6	3399208	3399408	-	1	NA	NA	NA	263	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.010000	0.313433	-2(CCTTTTAAACGA,+,0.00)
mm_112120.1	chr12	112860141	112860341	-	1	NA	NA	NA	675	NM_019925	56696	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.025000	0.547264	
mm_116937.1	chr13	55904820	55905020	-	1	NA	NA	NA	-73495	NM_011097	18740	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.010000	0.477612	
mm_145694.1	chr18	62182849	62183049	+	1	NA	NA	NA	-2968	NM_007420	11555	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.020000	0.477612	
mm_130625.1	chr15	100410063	100410263	-	1	NA	NA	NA	12892	NM_001146161	18174	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0.015000	0.557214	
mm_56389.1	chr6	94698758	94698958	-	1	NA	NA	NA	1287	NM_008377	16206	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.005000	0.467662	
mm_57985.1	chr6	136003321	136003521	-	1	NA	NA	NA	170090	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.010000	0.368159	
mm_99356.1	chr11	101588815	101589015	+	1	NA	NA	NA	6673	NM_144830	217203	Mm.280559	NM_144830	ENSMUSG00000034947	Tmem106a	0610008L10Rik|AI043106|BC022145	transmembrane protein 106A	protein-coding	0.025000	0.542289	
mm_24458.1	chr3	90614252	90614452	+	1	NA	NA	NA	1458	NM_011313	20200	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0.025000	0.452736	
mm_76479.1	chr8	85548591	85548791	-	1	NA	NA	NA	6580	NM_019794	56445	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0.020000	0.442786	
mm_54525.1	chr6	36179689	36179889	-	1	NA	NA	NA	-208295	NM_203491	243764	Mm.448632	NM_203491	ENSMUSG00000045613	Chrm2	AChR-M2|Chrm-2|M2	cholinergic receptor, muscarinic 2, cardiac	protein-coding	0.005000	0.388060	
mm_77476.1	chr8	122443315	122443515	-	1	NA	NA	NA	7	NM_138656	192156	Mm.28146	NM_138656	ENSMUSG00000006517	Mvd	C78718|Mpd	mevalonate (diphospho) decarboxylase	protein-coding	0.065000	0.587065	
mm_130152.1	chr15	91190890	91191090	-	1	NA	NA	NA	817	NM_011994	26874	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.020000	0.422886	
mm_113724.1	chr13	43790941	43791141	+	1	NA	NA	NA	5929	NM_001289915	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.005000	0.373134	
mm_56552.1	chr6	100287390	100287590	-	1	NA	NA	NA	-132	NM_019743	56353	Mm.321633	NM_019743	ENSMUSG00000072872	Rybp	2410018J24Rik|DEDAF|YEAF1	RING1 and YY1 binding protein	protein-coding	0.190000	0.800995	
mm_39862.1	chr5	30968561	30968761	+	1	NA	NA	NA	-16	NM_053085	69852	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	0.020000	0.611940	
mm_105328.1	chr11	102897052	102897252	-	1	NA	NA	NA	48	NM_001131020	14580	Mm.1239	NM_010277	ENSMUSG00000020932	Gfap	AI836096	glial fibrillary acidic protein	protein-coding	0.040000	0.641791	-12(CTCCATAAAGGC,-,0.00)
mm_95365.1	chr11	49076465	49076665	+	1	NA	NA	NA	-22	NM_001271677	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.015000	0.437811	
mm_4597.1	chr1	178338096	178338296	+	1	NA	NA	NA	-412	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.020000	0.348259	
mm_172555.1	chr8	105593915	105594115	+	1	NA	NA	NA	-11214	NM_001081241	75687	Mm.41261	NM_001081241	ENSMUSG00000038604	Fam65a	2310066E14Rik|AI837433	family with sequence similarity 65, member A	protein-coding	0.025000	0.537313	
mm_104846.1	chr11	99230877	99231077	-	1	NA	NA	NA	40	NM_020618	57376	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	0.065000	0.572139	
mm_85888.1	chr9	111053783	111053983	-	1	NA	NA	NA	3361	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.010000	0.512438	
mm_117761.1	chr13	96132455	96132655	-	1	NA	NA	NA	22	NM_029210	75209	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	0.100000	0.731343	
mm_147477.1	chr18	47112255	47112455	-	1	NA	NA	NA	153479	NM_178377	69456	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2	COMM domain containing 10	protein-coding	0.010000	0.437811	
mm_145783.1	chr18	65083468	65083668	+	1	NA	NA	NA	60041	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.040000	0.522388	
mm_167599.1	chr9	50592921	50593121	-	1	NA	NA	NA	10828	NM_025848	66925	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0.005000	0.432836	
mm_44771.1	chr5	31961478	31961678	-	1	NA	NA	NA	-174894	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.005000	0.402985	
mm_125464.1	chr15	52712356	52712556	+	1	NA	NA	NA	11	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.140000	0.706468	
mm_58971.1	chr7	19003971	19004171	+	1	NA	NA	NA	6	NM_178757	272359	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0.125000	0.691542	
mm_99900.1	chr11	109651045	109651245	+	1	NA	NA	NA	224	NM_001313976	19084	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.155000	0.810945	
mm_136564.1	chr17	3239748	3239948	+	1	NA	NA	NA	-86725	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.020000	0.393035	
mm_145986.1	chr18	68227971	68228171	+	1	NA	NA	NA	32902	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0.005000	0.472637	
mm_158341.1	chrX	134162386	134162586	-	1	NA	NA	NA	-558	NM_183319	331524	Mm.235055	NM_183319	ENSMUSG00000031258	Xkrx	A630026F04	X-linked Kx blood group related, X-linked	protein-coding	0.020000	0.542289	
mm_89923.1	chr10	111226795	111226995	+	1	NA	NA	NA	62093	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.000000	0.378109	-63(TACTTTTTAAGC,-,0.00),-61(CTTTTTAAGCTC,+,0.00)
mm_125009.1	chr15	25414211	25414411	+	1	NA	NA	NA	119	NR_027376	432939	Mm.146555	NM_001013791		Gm5468	100040583|EG432939	predicted gene 5468	ncRNA	0.050000	0.552239	
mm_42931.1	chr5	122850092	122850292	+	1	NA	NA	NA	4	NM_030564	80751	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	0.120000	0.686567	
mm_68815.1	chr7	125707641	125707841	-	1	NA	NA	NA	-53	NM_207239	233863	Mm.294173	NM_207239	ENSMUSG00000032777	Gtf3c1	-	general transcription factor III C 1	protein-coding	0.120000	0.696517	
mm_139884.1	chr17	70819577	70819777	+	1	NA	NA	NA	27100	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.010000	0.348259	
mm_63175.1	chr7	125368895	125369095	+	1	NA	NA	NA	134	NM_001145759	75861	Mm.349600	NM_001145759		4930571K23Rik	AI428146	RIKEN cDNA 4930571K23 gene	protein-coding	0.010000	0.562189	
mm_115328.1	chr13	112465745	112465945	+	1	NA	NA	NA	1775	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.005000	0.477612	
mm_170952.1	chr2	5379081	5379281	-	1	NA	NA	NA	-209	NR_030601	100124465		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.055000	0.492537	
mm_26378.1	chr3	142567457	142567657	+	1	NA	NA	NA	7061	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.015000	0.497512	
mm_48423.1	chr5	140389160	140389360	-	1	NA	NA	NA	48	NM_172277	231834	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.125000	0.751244	
mm_118169.1	chr13	105299611	105299811	-	1	NA	NA	NA	-6697	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.010000	0.368159	
mm_148477.1	chr19	4100907	4101107	+	1	NA	NA	NA	385	NM_008851	18739	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0.100000	0.726368	
mm_81012.1	chr9	104063594	104063794	+	1	NA	NA	NA	-9	NM_175324	102632	Mm.41274	NM_175324	ENSMUSG00000090150	Acad11	5730439E10Rik|AI987948	acyl-Coenzyme A dehydrogenase family, member 11	protein-coding	0.055000	0.636816	
mm_89751.1	chr10	99263204	99263404	+	1	NA	NA	NA	73	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.045000	0.527363	
mm_113020.1	chr13	22006469	22006669	+	1	NA	NA	NA	3172	NM_019429	54373	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0.025000	0.572139	
mm_145322.1	chr18	54906806	54907006	+	1	NA	NA	NA	83274	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.020000	0.477612	
mm_25379.1	chr3	107211365	107211565	+	1	NA	NA	NA	10267	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.522388	
mm_25450.1	chr3	108364828	108365028	+	1	NA	NA	NA	17	NM_026831	68753	Mm.75201	NM_026831	ENSMUSG00000068745	Mybphl	1110037P11Rik	myosin binding protein H-like	protein-coding	0.000000	0.577114	
mm_4954.1	chr1	191239814	191240014	+	1	NA	NA	NA	-56581	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.010000	0.432836	25(GTTTTTTAAAGC,-,0.00),26(TTTTTTAAAGCT,+,0.00)
mm_21020.1	chr2	152397934	152398134	-	1	NA	NA	NA	12	NM_011438	20667	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.185000	0.796020	
mm_151489.1	chr19	58679647	58679847	+	1	NA	NA	NA	9382	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.005000	0.442786	
mm_110610.1	chr12	56536816	56537016	-	1	NA	NA	NA	-8	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.040000	0.572139	
mm_144938.1	chr18	37746897	37747097	+	1	NA	NA	NA	-191	NM_033593	93722	Mm.247203	NM_033593	ENSMUSG00000102222	Pcdhga10	-	protocadherin gamma subfamily A, 10	protein-coding	0.055000	0.537313	
mm_82472.1	chr9	16499159	16499359	-	1	NA	NA	NA	-121028	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.010000	0.323383	
mm_131029.1	chr16	3730178	3730378	+	1	NA	NA	NA	-12154	NM_001161791	54483	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.015000	0.497512	
mm_16635.1	chr2	5844851	5845051	-	1	NA	NA	NA	9	NM_133837	98828	Mm.181490	NM_133837	ENSMUSG00000039128	Cdc123	AA959893|G431001I09Rik	cell division cycle 123	protein-coding	0.085000	0.582090	-59(TCTTTAAGACGG,+,0.00)
mm_39846.1	chr5	30907845	30908045	+	1	NA	NA	NA	-157	NM_024460	67695	Mm.21450	NM_024460	ENSMUSG00000038803	Ost4	2310016E02Rik	oligosaccharyltransferase complex subunit 4 (non-catalytic)	protein-coding	0.105000	0.721393	
mm_53487.1	chr6	135078640	135078840	+	1	NA	NA	NA	13078	NM_181444	232431	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	0.040000	0.577114	
mm_152263.1	chr19	8798311	8798511	-	1	NA	NA	NA	146	NM_026329	67710	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	0.040000	0.587065	
mm_64992.1	chr7	16917540	16917740	-	1	NA	NA	NA	6392	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.035000	0.592040	
mm_103491.1	chr11	76548337	76548537	-	1	NA	NA	NA	22947	NM_198895	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.010000	0.398010	
mm_62700.1	chr7	110221632	110221832	+	1	NA	NA	NA	29	NM_009302	20947	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.080000	0.691542	
mm_41580.1	chr5	93173509	93173709	+	1	NA	NA	NA	32886	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.015000	0.348259	64(CTTTTTAAAGCT,+,0.00)
mm_38577.1	chr4	141817858	141818058	-	1	NA	NA	NA	8047	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.035000	0.567164	
mm_137171.1	chr17	23815054	23815254	+	1	NA	NA	NA	11967	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.035000	0.497512	
mm_101640.1	chr11	36432924	36433124	-	1	NA	NA	NA	-452935	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.035000	0.517413	-16(CCTTTAAAATCC,+,0.00),-6(CCTTTTATGGAG,+,0.00)
mm_72511.1	chr8	83900505	83900705	+	1	NA	NA	NA	507	NM_181039	330814	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0.150000	0.771144	
mm_147033.1	chr18	34751251	34751451	-	1	NA	NA	NA	182	NM_009860	12532	Mm.286602	NM_009860	ENSMUSG00000044201	Cdc25c	Cdc25	cell division cycle 25C	protein-coding	0.040000	0.427861	
mm_12034.1	chr2	58755086	58755286	+	1	NA	NA	NA	2	NM_029692	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.005000	0.432836	-34(GCGTATAAAAGG,-,0.00)
mm_114360.1	chr13	61039001	61039201	+	1	NA	NA	NA	1496	NM_029636	104002	Mm.46088	NM_029636	ENSMUSG00000021439	Ctsq	1600010J02Rik	cathepsin Q	protein-coding	0.000000	0.378109	
mm_75448.1	chr8	47675019	47675219	-	1	NA	NA	NA	40	NM_023503	69260	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.085000	0.686567	
mm_156035.1	chrX	107542471	107542671	+	1	NA	NA	NA	-11	NR_033580	71011	Mm.307348	NR_033580	ENSMUSG00000055700	4933401B06Rik	-	GLE1 RNA export mediator pseudogene	pseudo	0.005000	0.482587	68(GCCTCTAAAATG,-,0.00)
mm_168724.1	chr12	110694979	110695179	-	1	NA	NA	NA	1316	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.015000	0.482587	
mm_46650.1	chr5	108629597	108629797	-	1	NA	NA	NA	80	NM_153569	231580	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	0.130000	0.711443	
mm_130640.1	chr15	100551746	100551946	-	1	NA	NA	NA	162	NM_033476	21422	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	0.085000	0.671642	
mm_157205.1	chrX	12677499	12677699	-	1	NA	NA	NA	-3960	NM_175141	69155	Mm.15974	NM_175141	ENSMUSG00000044148	1810030O07Rik	-	RIKEN cDNA 1810030O07 gene	protein-coding	0.015000	0.427861	30(GTTTTTAAACCA,+,0.00)
mm_90038.1	chr10	115817185	115817385	+	1	NA	NA	NA	1	NM_001168679	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	0.020000	0.467662	
mm_119184.1	chr14	32201909	32202109	+	1	NA	NA	NA	38	NM_011960	26430	Mm.15962	NM_011960	ENSMUSG00000021911	Parg	AI413217	poly (ADP-ribose) glycohydrolase	protein-coding	0.120000	0.706468	
mm_88719.1	chr10	80158659	80158859	+	1	NA	NA	NA	9077	NM_001305799	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.020000	0.592040	
mm_98254.1	chr11	88624838	88625038	+	1	NA	NA	NA	5687	NR_131025	68397	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	0.020000	0.527363	
mm_84256.1	chr9	62536657	62536857	-	1	NA	NA	NA	287	NM_175484	235431	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.140000	0.756219	
mm_41616.1	chr5	96799701	96799901	+	1	NA	NA	NA	6416	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.020000	0.467662	
mm_88146.1	chr10	69533613	69533813	+	1	NA	NA	NA	5	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.025000	0.537313	
mm_118222.1	chr13	110397659	110397859	-	1	NA	NA	NA	2715	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.020000	0.487562	
mm_160874.1	chr11	68594052	68594252	+	1	NA	NA	NA	7115	NM_177779	276920	Mm.123046	NM_177779	ENSMUSG00000045915	Ccdc42	A530001H01Rik	coiled-coil domain containing 42	protein-coding	0.020000	0.547264	
mm_17184.1	chr2	25460846	25461046	-	1	NA	NA	NA	148	NM_153557	227622	Mm.261780	NM_153557	ENSMUSG00000047617	BC029214	D930050G13Rik|Paxx	cDNA sequence BC029214	protein-coding	0.090000	0.621891	
mm_119033.1	chr14	30549049	30549249	+	1	NA	NA	NA	18	NM_009388	21881	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0.105000	0.701493	
mm_93114.1	chr10	91123189	91123389	-	1	NA	NA	NA	674	NM_133668	18674	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.035000	0.557214	
mm_154629.1	chrX	7762455	7762655	+	1	NA	NA	NA	-106	NM_001271489	209446	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	0.065000	0.616915	
mm_82819.1	chr9	31030141	31030341	-	1	NA	NA	NA	-403	NM_001115130	235132	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.090000	0.631841	
mm_156768.1	chrX	160768016	160768216	+	1	NA	NA	NA	103	NM_011302	20147	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	0.005000	0.452736	
mm_158059.1	chrX	101067633	101067833	-	1	NA	NA	NA	-8094	NM_001167997	83558	Mm.134024	NM_031384	ENSMUSG00000009670	Tex11	4930565P14Rik|BB024231|ZIP4H	testis expressed gene 11	protein-coding	0.030000	0.497512	
mm_137476.1	chr17	26780977	26781177	+	1	NA	NA	NA	-2	NM_172149	224630	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	0.080000	0.577114	
mm_19294.1	chr2	90458220	90458420	-	1	NA	NA	NA	20854	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.025000	0.532338	
mm_101332.1	chr11	23257383	23257583	-	1	NA	NA	NA	1442	NM_134014	103573	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.060000	0.562189	-34(GCATTTAGACCC,+,0.00)
mm_140581.1	chr17	10211971	10212171	-	1	NA	NA	NA	107290	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.005000	0.378109	
mm_137582.1	chr17	28007431	28007631	+	1	NA	NA	NA	73053	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.050000	0.542289	-74(GCCTTTATGGGA,+,0.00),26(CCTTATATAGCA,+,0.00)
mm_99231.1	chr11	101062933	101063133	+	1	NA	NA	NA	-7061	NM_013792	27419	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.020000	0.611940	
mm_35103.1	chr4	9451055	9451255	-	1	NA	NA	NA	181838	NM_028940	74438	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.000000	0.268657	
mm_31965.1	chr4	86930654	86930854	+	1	NA	NA	NA	56340	NM_139306	230379	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0.025000	0.527363	
mm_150009.1	chr19	29312114	29312314	+	1	NA	NA	NA	13104	NM_013754	27356	Mm.306511	NM_013754	ENSMUSG00000050957	Insl6	RIF1	insulin-like 6	protein-coding	0.005000	0.308458	
mm_59313.1	chr7	25284827	25285027	+	1	NA	NA	NA	2748	NM_027882	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.015000	0.601990	
mm_129897.1	chr15	83595072	83595272	-	1	NA	NA	NA	-15	NM_183017	223723	Mm.46778	NM_183017	ENSMUSG00000016757	Ttll12	BC055368|D430005B17	tubulin tyrosine ligase-like family, member 12	protein-coding	0.120000	0.681592	
mm_116070.1	chr13	27640713	27640913	-	1	NA	NA	NA	1680	NM_001164058	19113	Mm.196424	NM_008930	ENSMUSG00000006488	Prl7a1	AA407021|AA409971|AA410116|PLP-E|PLP-G|Prlpe|Prlpg	prolactin family 7, subfamily a, member 1	protein-coding	0.005000	0.442786	28(CCTTTTATGGGA,+,0.00)
mm_17088.1	chr2	22989150	22989350	-	1	NA	NA	NA	50991	NM_001077192	11308	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.000000	0.562189	
mm_136495.1	chr16	96135783	96135983	-	1	NA	NA	NA	-8158	NM_008251	15312	Mm.2756	NM_008251	ENSMUSG00000040681	Hmgn1	HMG-14|Hmg14	high mobility group nucleosomal binding domain 1	protein-coding	0.010000	0.532338	-35(GCTTTAAGACCC,+,0.00)
mm_166782.1	chr6	141856088	141856288	-	1	NA	NA	NA	-17	NM_030687	28250	Mm.255586	NM_030687	ENSMUSG00000030237	Slco1a4	AI785519|Oatp1a4|Oatp2|Slc21a5	solute carrier organic anion transporter family, member 1a4	protein-coding	0.010000	0.447761	
mm_23763.1	chr3	73066252	73066452	+	1	NA	NA	NA	1	NR_040557	626082	Mm.428099	NR_040557	ENSMUSG00000103428	Gm20754	-	predicted gene, 20754	ncRNA	0.050000	0.552239	
mm_171273.1	chr3	88775134	88775334	+	1	NA	NA	NA	-1823	NR_028359	100302730	Mm.482358	NR_028359		5830417I10Rik	3632445O20Rik|AA387005	gon-4-like pseudogene	pseudo	0.115000	0.666667	
mm_21769.1	chr2	164844602	164844802	-	1	NA	NA	NA	10929	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.045000	0.592040	
mm_26385.1	chr3	142569114	142569314	+	1	NA	NA	NA	8718	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.000000	0.547264	
mm_34584.1	chr4	150148789	150148989	+	1	NA	NA	NA	-83	NM_001085529	435818	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	OTTMUSG00000010396	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0.025000	0.542289	
mm_57112.1	chr6	122595729	122595929	-	1	NA	NA	NA	6615	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.020000	0.497512	
mm_75851.1	chr8	70659571	70659771	-	1	NA	NA	NA	67	NM_023217	66522	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0.110000	0.721393	
mm_138347.1	chr17	34931266	34931466	+	1	NA	NA	NA	113	NM_010893	18010	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0.100000	0.686567	-33(CGCTTTTAAAGG,-,0.00),-32(GCTTTTAAAGGG,+,0.00),-32(GCTTTTAAAGGG,-,0.00),-31(CTTTTAAAGGGC,+,0.00)
mm_157511.1	chrX	49273714	49273914	-	1	NA	NA	NA	14428	NM_001271449	209224	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	0.005000	0.502488	
mm_85731.1	chr9	108358996	108359196	-	1	NA	NA	NA	11265	NM_011678	22258	Mm.3974	NM_011678	ENSMUSG00000032612	Usp4	F730026I20Rik|Unp|mKIAA4155	ubiquitin specific peptidase 4 (proto-oncogene)	protein-coding	0.040000	0.517413	-80(TTTTTTAAAAGG,-,0.00),-79(TTTTTAAAAGGG,+,0.00)
mm_135507.1	chr16	46498485	46498685	-	1	NA	NA	NA	-1618	NM_021497	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.015000	0.512438	
mm_139718.1	chr17	57466602	57466802	+	1	NA	NA	NA	78612	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.000000	0.383085	
mm_56931.1	chr6	119544193	119544393	-	1	NA	NA	NA	54	NM_009525	22419	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0.195000	0.825871	
mm_122457.1	chr14	45388653	45388853	-	1	NA	NA	NA	43	NM_019425	54342	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding	0.120000	0.751244	
mm_171553.1	chr4	147131948	147132148	+	1	NA	NA	NA	-43818	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.040000	0.502488	
mm_115941.1	chr13	23684533	23684733	-	1	NA	NA	NA	434	NM_023422	68024	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	0.040000	0.562189	
mm_33983.1	chr4	137717273	137717473	+	1	NA	NA	NA	-7088	NR_138592	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.020000	0.547264	
mm_156620.1	chrX	153832159	153832359	+	1	NA	NA	NA	-34	NM_001005370	278240	Mm.293363	NM_001005370	ENSMUSG00000046550	Spin2c	BC068162|SPIN-2C|Spin2	spindlin family, member 2C	protein-coding	0.050000	0.606965	
mm_166704.1	chr6	115792848	115793048	+	1	NA	NA	NA	15155	NR_028546	100217451	Mm.484708	NR_028546	ENSMUSG00000064563	Snora7a	MBI-141	small nucleolar RNA, H/ACA box 7A	snoRNA	0.035000	0.641791	
mm_90639.1	chr10	128499327	128499527	+	1	NA	NA	NA	180	NR_131151	654440	Mm.441262	NR_131150	ENSMUSG00000097353	A430046D13Rik	-	Riken cDNA A430046D13 gene	ncRNA	0.055000	0.527363	
mm_148663.1	chr19	5601747	5601947	+	1	NA	NA	NA	-26	NM_026616	68209	Mm.246200	NM_026616	ENSMUSG00000024925	Rnaseh2c	1500026D16Rik|AYP1	ribonuclease H2, subunit C	protein-coding	0.045000	0.537313	
mm_82948.1	chr9	35558368	35558568	-	1	NA	NA	NA	2	NM_013932	30959	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	0.165000	0.786070	
mm_64905.1	chr7	16047541	16047741	-	1	NA	NA	NA	-24204	NM_001347559	666528	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.065000	0.611940	
mm_168515.1	chr11	5699898	5700098	-	1	NA	NA	NA	7701	NM_026080	64660	Mm.7328	NM_026080	ENSMUSG00000020477	Mrps24	3110030K20Rik|AI414579|Rpms24	mitochondrial ribosomal protein S24	protein-coding	0.010000	0.582090	
mm_59453.1	chr7	27195022	27195222	+	1	NA	NA	NA	638	NM_001046637	53607	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0.015000	0.492537	
mm_149133.1	chr19	9002551	9002751	+	1	NA	NA	NA	13367	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.010000	0.507463	
mm_69600.1	chr7	135716377	135716577	-	1	NA	NA	NA	-98	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.110000	0.686567	
mm_122285.1	chr14	34503168	34503368	-	1	NA	NA	NA	-722	NM_009758	12166	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK3|AU045487|BMPR-IA|Bmpr	bone morphogenetic protein receptor, type 1A	protein-coding	0.110000	0.686567	
mm_129838.1	chr15	83154326	83154526	-	1	NA	NA	NA	4781	NR_004432	104307	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.010000	0.631841	
mm_168666.1	chr1	191120896	191121096	+	1	NA	NA	NA	22582	NM_030060	381319	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.040000	0.467662	
mm_125527.1	chr15	57892655	57892855	+	1	NA	NA	NA	-337	NM_024207	67819	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.030000	0.467662	
mm_10708.1	chr2	22774254	22774454	+	1	NA	NA	NA	27	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.060000	0.656716	
mm_150242.1	chr19	34085276	34085476	+	1	NA	NA	NA	-15567	NM_023903	78753	Mm.195937	NM_023903	ENSMUSG00000056078	Lipm	4632427C23Rik|AW227514|Lipl3	lipase, family member M	protein-coding	0.000000	0.358209	
mm_130279.1	chr15	96702452	96702652	-	1	NA	NA	NA	-2854	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.025000	0.492537	
mm_114936.1	chr13	95988329	95988529	+	1	NA	NA	NA	-96507	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.015000	0.527363	
mm_40279.1	chr5	42615097	42615297	+	1	NA	NA	NA	547237	NR_131130	433882	Mm.319353	NR_131130	ENSMUSG00000067285	Gm16223	EG433882|OTTMUSG00000031875	predicted gene 16223	ncRNA	0.000000	0.368159	
mm_157535.1	chrX	51116006	51116206	-	1	NA	NA	NA	89884	NM_001310515	171170	Mm.295324	NM_134163	ENSMUSG00000036109	Mbnl3	A530038J18Rik|AI661274|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL	muscleblind-like 3 (Drosophila)	protein-coding	0.010000	0.398010	
mm_167557.1	chr9	35908289	35908489	+	1	NA	NA	NA	-58509	NR_030730	100041605	Mm.99350	NR_030730	ENSMUSG00000098705	Gm3428	-	predicted gene 3428	ncRNA	0.000000	0.378109	
mm_74868.1	chr8	25012520	25012720	-	1	NA	NA	NA	4302	NM_001270996	11502	Mm.28908	NM_007404	ENSMUSG00000031555	Adam9	AU020942|MDC9|Mltng|mKIAA0021	a disintegrin and metallopeptidase domain 9 (meltrin gamma)	protein-coding	0.005000	0.452736	-32(GCTTATAAACCT,+,0.00)
mm_66231.1	chr7	35121826	35122026	-	1	NA	NA	NA	2633	NM_007678	12606	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.015000	0.412935	-23(GGTTTTAAAAAG,-,0.00)
mm_22614.1	chr3	14578548	14578748	+	1	NA	NA	NA	-23	NM_007892	13559	Mm.153415	NM_007892	ENSMUSG00000027552	E2f5	AU024671|E2F-5	E2F transcription factor 5	protein-coding	0.160000	0.741294	-25(CCATTTAAACTC,+,0.00)
mm_42628.1	chr5	118381552	118381752	+	1	NA	NA	NA	136425	NM_001081236	76792	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0.030000	0.507463	
mm_70917.1	chr8	25754374	25754574	+	1	NA	NA	NA	-194	NM_028102	72108	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	0.125000	0.706468	
mm_122040.1	chr14	30008889	30009089	-	1	NA	NA	NA	-11	NM_001136240	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.100000	0.726368	
mm_76114.1	chr8	80788737	80788937	-	1	NA	NA	NA	-49378	NM_053124	93762	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.040000	0.537313	
mm_159574.1	chr4	115600840	115601040	+	1	NA	NA	NA	2	NM_001100181	100040843	Mm.482683	NM_001100181	ENSMUSG00000063929	Cyp4a32	OTTMUSG00000008689	cytochrome P450, family 4, subfamily a, polypeptide 32	protein-coding	0.015000	0.522388	
mm_85306.1	chr9	100987855	100988055	-	1	NA	NA	NA	46929	NM_001311149	66904	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0.010000	0.477612	
mm_90406.1	chr10	127390223	127390423	+	1	NA	NA	NA	12	NM_001168292	71750	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.010000	0.457711	
mm_103515.1	chr11	76763466	76763666	-	1	NA	NA	NA	-11	NM_016810	53334	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	0.055000	0.601990	
mm_76262.1	chr8	84011381	84011581	-	1	NA	NA	NA	152	NR_035431	100316677		NR_035431	ENSMUSG00000080665	Mir1199	Mirn1199|mir-1199|mmu-mir-1199	microRNA 1199	ncRNA	0.175000	0.751244	
mm_159815.1	chr5	120887471	120887671	-	1	NA	NA	NA	42	NM_011852	23960	Mm.389688	NM_011852	ENSMUSG00000066861	Oas1g	AI449562|L2|Mmu-L|Mmu-L2|Oas1b|Oias-1|Oias1	2'-5' oligoadenylate synthetase 1G	protein-coding	0.025000	0.547264	
mm_135497.1	chr16	46433599	46433799	-	1	NA	NA	NA	63268	NM_021496	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.015000	0.402985	
mm_70073.1	chr7	142653076	142653276	-	1	NA	NA	NA	1820	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.005000	0.467662	
mm_122520.1	chr14	47276720	47276920	-	1	NA	NA	NA	37	NM_172598	218973	Mm.265615	NM_172598	ENSMUSG00000037572	Wdhd1	A630092E18|AND-1|D630024B06Rik	WD repeat and HMG-box DNA binding protein 1	protein-coding	0.125000	0.726368	
mm_172925.1	chr9	69464411	69464611	+	1	NA	NA	NA	7567	NR_037296	100526560		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0.010000	0.358209	
mm_12639.1	chr2	74711798	74711998	+	1	NA	NA	NA	-95	NM_010468	15434	Mm.430708	NM_010468	ENSMUSG00000079277	Hoxd3	Hox-4.1|Hox-5.5	homeobox D3	protein-coding	0.045000	0.512438	-73(CTTTTTATGACC,+,0.00)
mm_22135.1	chr2	170470604	170470804	-	1	NA	NA	NA	-25724	NM_001013369	109054	Mm.28808	NM_001013369	ENSMUSG00000052033	Pfdn4	0610025M10Rik|1810063B06Rik|C-1|C1|Pfd4	prefoldin 4	protein-coding	0.010000	0.497512	
mm_60682.1	chr7	45154226	45154426	+	1	NA	NA	NA	23	NM_001278207	68845	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	0.125000	0.741294	
mm_170077.1	chr17	33760181	33760381	-	1	NA	NA	NA	205	NM_008997	19326	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0.125000	0.651741	-79(GCCTTTAGACCG,+,0.00)
mm_148232.1	chr18	80451154	80451354	-	1	NA	NA	NA	18413	NM_026295	67655	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.025000	0.492537	
mm_148553.1	chr19	4711991	4712191	+	1	NA	NA	NA	868	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	0.185000	0.830846	
mm_38600.1	chr4	141859140	141859340	-	1	NA	NA	NA	-12881	NM_001033875	76701	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	0.015000	0.552239	
mm_84423.1	chr9	65764904	65765104	-	1	NA	NA	NA	62560	NM_172536	214812	Mm.139231	NM_172536	ENSMUSG00000040524	Zfp609	9830165N24|BC016271|Znf609|mKIAA0295	zinc finger protein 609	protein-coding	0.000000	0.417910	
mm_130414.1	chr15	97997494	97997694	-	1	NA	NA	NA	7130	NM_031163	12824	Mm.2423	NM_031163	ENSMUSG00000022483	Col2a1	Col2|Col2a|Col2a-1|Del1|Dmm|Lpk|Rgsc856	collagen, type II, alpha 1	protein-coding	0.035000	0.442786	-79(GCCTTTTAAAGG,-,0.00),-78(CCTTTTAAAGGC,+,0.00),-77(CTTTTAAAGGCG,+,0.00),-34(ACGTTTATAAGG,-,0.00),-32(GTTTATAAGGCA,+,0.00)
mm_34272.1	chr4	141424101	141424301	+	1	NA	NA	NA	3422	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.010000	0.582090	
mm_3233.1	chr1	135849965	135850165	+	1	NA	NA	NA	9204	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.000000	0.432836	
mm_9356.1	chr1	172197760	172197960	-	1	NA	NA	NA	8944	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.015000	0.527363	
mm_17062.1	chr2	22589337	22589537	-	1	NA	NA	NA	-32890	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.025000	0.358209	
mm_74056.1	chr8	122332676	122332876	+	1	NA	NA	NA	27970	NM_133202	170732	Mm.154808	NM_133202	ENSMUSG00000039079	Trhr2	TRH-R2	thyrotropin releasing hormone receptor 2	protein-coding	0.010000	0.641791	
mm_158090.1	chrX	101384563	101384763	-	1	NA	NA	NA	931	NM_001302497	14618	Mm.21198	NM_008124	ENSMUSG00000047797	Gjb1	Cnx32|Cx32|connexin-32	gap junction protein, beta 1	protein-coding	0.050000	0.572139	
mm_6210.1	chr1	66817468	66817668	-	1	NA	NA	NA	27	NM_177645	68691	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.155000	0.810945	
mm_169830.1	chr16	24529318	24529518	+	1	NA	NA	NA	104	NR_038091	624582	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.040000	0.537313	74(TGCCATAAAGGA,-,0.00)
mm_84015.1	chr9	57646658	57646858	-	1	NA	NA	NA	-1105	NM_007783	12988	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.025000	0.487562	
mm_45667.1	chr5	77211100	77211300	-	1	NA	NA	NA	5	NM_001289767	69982	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0.035000	0.557214	
mm_68550.1	chr7	114276016	114276216	-	1	NA	NA	NA	0	NM_011965	26440	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.095000	0.626866	
mm_123045.1	chr14	55590962	55591162	-	1	NA	NA	NA	39	NM_001029855	19188	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	0.045000	0.616915	
mm_38604.1	chr4	141860480	141860680	-	1	NA	NA	NA	-14221	NM_001033875	76701	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	0.055000	0.601990	
mm_167351.1	chr8	83740296	83740496	+	1	NA	NA	NA	915	NM_001163029	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.025000	0.562189	
mm_70707.1	chr8	15058872	15059072	+	1	NA	NA	NA	1319	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.020000	0.477612	
mm_6072.1	chr1	60910839	60911039	-	1	NA	NA	NA	1914	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.005000	0.437811	42(GTGTTTAAAAAA,-,0.00)
mm_32842.1	chr4	117849205	117849405	+	1	NA	NA	NA	14047	NM_008135	14664	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	0.045000	0.641791	
mm_55998.1	chr6	86438527	86438727	-	1	NA	NA	NA	-19	NM_001243742	232196	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	0.095000	0.611940	
mm_100626.1	chr11	121702434	121702634	+	1	NA	NA	NA	107	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.110000	0.686567	
mm_112335.1	chr12	115981082	115981282	-	1	NA	NA	NA	-66542	NM_001004066	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0.000000	0.437811	
mm_108764.1	chr12	89453919	89454119	+	1	NA	NA	NA	-358464	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.015000	0.358209	
mm_48805.1	chr5	148959888	148960088	-	1	NA	NA	NA	9738	NR_040686	71473	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	0.020000	0.527363	
mm_73688.1	chr8	111556535	111556735	+	1	NA	NA	NA	18292	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.005000	0.537313	
mm_60431.1	chr7	44476726	44476926	+	1	NA	NA	NA	6479	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.422886	
mm_57625.1	chr6	128279034	128279234	-	1	NA	NA	NA	21679	NM_001080979	21679	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	0.005000	0.477612	
mm_92868.1	chr10	81627500	81627700	-	1	NA	NA	NA	8	NM_181586	50721	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0.085000	0.582090	
mm_129767.1	chr15	82692972	82693172	-	1	NA	NA	NA	-3014	NR_033515	627860	Mm.486636	NR_033515		Cyp2d37-ps	EG627860|Gm6800	cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene	pseudo	0.005000	0.517413	
mm_7177.1	chr1	92439688	92439888	-	1	NA	NA	NA	24754	NR_105865	102465542		NR_105865	ENSMUSG00000098288	Mir6900	Gm27708|mmu-mir-6900	microRNA 6900	ncRNA	0.015000	0.482587	
mm_48963.1	chr6	4600567	4600767	+	1	NA	NA	NA	-399	NM_145398	213819	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1	CAS1 domain containing 1	protein-coding	0.015000	0.587065	
mm_103025.1	chr11	69735084	69735284	-	1	NA	NA	NA	23449	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.010000	0.527363	
mm_129692.1	chr15	81523187	81523387	-	1	NA	NA	NA	56971	NM_019712	56438	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.090000	0.706468	
mm_153095.1	chr19	32682745	32682945	-	1	NA	NA	NA	29453	NM_026487	67979	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.005000	0.368159	
mm_106309.1	chr11	118302054	118302254	-	1	NA	NA	NA	-11910	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.010000	0.517413	35(GTCCTTTTAAGA,-,0.00),37(CCTTTTAAGACA,+,0.00)
mm_49453.1	chr6	29374379	29374579	+	1	NA	NA	NA	6034	NM_007538	12057	Mm.56987	NM_007538	ENSMUSG00000058831	Opn1sw	AW551857|Bcp	opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)	protein-coding	0.020000	0.437811	
mm_154002.1	chr19	53013355	53013555	-	1	NA	NA	NA	-2699	NR_105834	102465220		NR_105834	ENSMUSG00000098730	Mir6407	Gm27832|mmu-mir-6407	microRNA 6407	ncRNA	0.020000	0.567164	
mm_1068.1	chr1	59172000	59172200	+	1	NA	NA	NA	-8711	NM_001164682	227157	Mm.474049	NM_145143	ENSMUSG00000079550	Mpp4	Dlg6	membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)	protein-coding	0.015000	0.472637	-45(CTGTATTAAAGG,-,0.00)
mm_139597.1	chr17	57249386	57249586	+	1	NA	NA	NA	35	NM_001242389	106628	Mm.37368	NM_134125	ENSMUSG00000019487	Trip10	AI646975|Cip4	thyroid hormone receptor interactor 10	protein-coding	0.080000	0.686567	
mm_22248.1	chr2	174807764	174807964	-	1	NA	NA	NA	47245	NM_007903	13616	Mm.9478	NM_007903	ENSMUSG00000027524	Edn3	ET-3|PPET3|ls|tmgc48	endothelin 3	protein-coding	0.015000	0.452736	
mm_45841.1	chr5	87697043	87697243	-	1	NA	NA	NA	2282	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.000000	0.298507	
mm_85863.1	chr9	110873900	110874100	-	1	NA	NA	NA	6083	NM_146260	20776	Mm.390229	NM_146260	ENSMUSG00000049555	Tmie	5131400L21Rik|Mm.87012|sr	transmembrane inner ear	protein-coding	0.070000	0.646766	
mm_93288.1	chr10	96306833	96307033	-	1	NA	NA	NA	80726	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.020000	0.467662	
mm_71361.1	chr8	45690007	45690207	+	1	NA	NA	NA	28114	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.005000	0.368159	
mm_142689.1	chr17	47737687	47737887	-	1	NA	NA	NA	-144	NM_001161723	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.090000	0.766169	
mm_71998.1	chr8	70649445	70649645	+	1	NA	NA	NA	10193	NM_023217	66522	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0.005000	0.582090	
mm_51433.1	chr6	78467405	78467605	+	1	NA	NA	NA	1369	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.010000	0.487562	
mm_113903.1	chr13	49216079	49216279	+	1	NA	NA	NA	-153	NM_026738	68480	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.080000	0.621891	
mm_95856.1	chr11	57973161	57973361	+	1	NA	NA	NA	-35803	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.015000	0.611940	
mm_44509.1	chr5	24100376	24100576	-	1	NA	NA	NA	-114	NM_026448	52323	Mm.273768	NM_026448	ENSMUSG00000028986	Klhl7	2700038B03Rik|D5Ertd363e|SBBI26	kelch-like 7	protein-coding	0.095000	0.606965	
mm_96402.1	chr11	67250771	67250971	+	1	NA	NA	NA	13059	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.030000	0.477612	
mm_121805.1	chr14	20269109	20269309	-	1	NA	NA	NA	-47	NM_029006	74571	Mm.105571	NM_029006	ENSMUSG00000023387	Kcnk16	4731413G05Rik|TALK-1|TALK1	potassium channel, subfamily K, member 16	protein-coding	0.020000	0.621891	
mm_38158.1	chr4	135214398	135214598	-	1	NA	NA	NA	58262	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.005000	0.358209	
mm_134611.1	chr16	20784638	20784838	-	1	NA	NA	NA	-50227	NM_009379	21832	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.010000	0.432836	
mm_61952.1	chr7	90207629	90207829	+	1	NA	NA	NA	57703	NM_029256	75338	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.020000	0.447761	45(ACTTATAAAGCC,+,0.00)
mm_149906.1	chr19	25610443	25610643	+	1	NA	NA	NA	6	NM_177360	240590	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	0.060000	0.706468	
mm_47825.1	chr5	134264331	134264531	-	1	NA	NA	NA	-34806	NR_104383	17969	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.015000	0.512438	
mm_121385.1	chr14	118953335	118953535	+	1	NA	NA	NA	15503	NM_008929	100037258	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.015000	0.482587	
mm_143464.1	chr17	70997912	70998112	-	1	NA	NA	NA	4521	NM_026064	67268	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0.015000	0.452736	-14(GCTTTAAAACTG,+,0.00)
mm_45264.1	chr5	64255047	64255247	-	1	NA	NA	NA	24790	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.020000	0.537313	
mm_126080.1	chr15	77800721	77800921	+	1	NA	NA	NA	41354	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.000000	0.557214	
mm_56681.1	chr6	113891235	113891435	-	1	NA	NA	NA	204	NM_001036684	11941	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.140000	0.741294	
mm_7515.1	chr1	124045123	124045323	-	1	NA	NA	NA	336	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.040000	0.606965	
mm_56481.1	chr6	99096118	99096318	-	1	NA	NA	NA	-67920	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.035000	0.527363	
mm_89785.1	chr10	102158781	102158981	+	1	NA	NA	NA	23	NM_001162368	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.025000	0.442786	
mm_14961.1	chr2	152081023	152081223	+	1	NA	NA	NA	-406	NM_001160410	545474	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.015000	0.601990	
mm_91852.1	chr10	59165166	59165366	-	1	NA	NA	NA	56581	NM_001024911	103080	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	0.020000	0.447761	
mm_104662.1	chr11	97629200	97629400	-	1	NA	NA	NA	416	NM_175332	103551	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0.090000	0.736318	
mm_113357.1	chr13	32801980	32802180	+	1	NA	NA	NA	50	NM_030215	78903	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	0.140000	0.721393	
mm_100946.1	chr11	6546673	6546873	-	1	NA	NA	NA	-114	NM_146014	216527	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0.085000	0.711443	
mm_55130.1	chr6	50631024	50631224	-	1	NA	NA	NA	23269	NM_021892	60531	Mm.157158	NM_021892	ENSMUSG00000029831	Npvf	Rfrp	neuropeptide VF precursor	protein-coding	0.005000	0.507463	-35(CCCTTTAAAAGG,+,0.00),-35(CCCTTTAAAAGG,-,0.00),-34(CCTTTAAAAGGT,+,0.00),-33(CTTTAAAAGGTC,+,0.00)
mm_84916.1	chr9	80067266	80067466	-	1	NA	NA	NA	463	NM_146003	215351	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.140000	0.796020	
mm_131642.1	chr16	20516881	20517081	+	1	NA	NA	NA	-5	NM_001347176	13544	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	-	dishevelled segment polarity protein 3	protein-coding	0.140000	0.796020	
mm_15696.1	chr2	163662795	163662995	+	1	NA	NA	NA	4437	NM_001164053	18769	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.005000	0.517413	
mm_17898.1	chr2	35101110	35101310	-	1	NA	NA	NA	-525	NM_001243103	98870	Mm.415380	NM_178885	ENSMUSG00000035875	AI182371	AI046667	expressed sequence AI182371	protein-coding	0.015000	0.487562	
mm_156649.1	chrX	157702480	157702680	+	1	NA	NA	NA	3607	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.030000	0.557214	
mm_138021.1	chr17	33910305	33910505	+	1	NA	NA	NA	804	NM_001199733	13163	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0.025000	0.527363	
mm_121328.1	chr14	114945940	114946140	+	1	NA	NA	NA	-92	NR_126548	74982		NR_126548		1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	0.015000	0.417910	
mm_128431.1	chr15	50682351	50682551	-	1	NA	NA	NA	206598	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.368159	
mm_78667.1	chr9	40710012	40710212	+	1	NA	NA	NA	24148	NM_133733	71566	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.010000	0.487562	
mm_69240.1	chr7	127777652	127777852	-	1	NA	NA	NA	363	NM_178029	233904	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	0.115000	0.741294	
mm_84.1	chr1	6995121	6995321	+	1	NA	NA	NA	-93699	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.010000	0.417910	
mm_160756.1	chr10	82629763	82629963	+	1	NA	NA	NA	21	NR_037190	624784	Mm.284252	NR_037190		Gm9855	ENSMUSG00000051559	thymine DNA glycosylase pseudogene	pseudo	0.130000	0.736318	-89(GCCCCGAAAAGG,-,0.00)
mm_152529.1	chr19	11324435	11324635	-	1	NA	NA	NA	10160	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.005000	0.472637	
mm_125491.1	chr15	54892457	54892657	+	1	NA	NA	NA	27589	NM_015744	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.020000	0.477612	
mm_26919.1	chr3	20242094	20242294	-	1	NA	NA	NA	-13	NM_007753	12873	Mm.1135	NM_007753	ENSMUSG00000001865	Cpa3	MC-CPA	carboxypeptidase A3, mast cell	protein-coding	0.015000	0.422886	
mm_80325.1	chr9	75004268	75004468	+	1	NA	NA	NA	28257	NM_153584	235493	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	0.045000	0.562189	
mm_32931.1	chr4	119234479	119234679	+	1	NA	NA	NA	750	NM_001042411	56401	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	0.015000	0.522388	
mm_111950.1	chr12	109458029	109458229	-	1	NA	NA	NA	4674	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.030000	0.557214	
mm_15358.1	chr2	156371162	156371362	+	1	NA	NA	NA	21717	NR_024329	347740	Mm.324242	NR_024329		2900097C17Rik	1810005K14Rik|4930563C06Rik	RIKEN cDNA 2900097C17 gene	ncRNA	0.005000	0.517413	
mm_158891.1	chr1	19213827	19214027	+	1	NA	NA	NA	1873	NM_001025305	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.035000	0.587065	
mm_86433.1	chr10	3863759	3863959	+	1	NA	NA	NA	-8808	NM_001033253	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.020000	0.507463	
mm_122181.1	chr14	31577189	31577389	-	1	NA	NA	NA	94	NM_009937	382864	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.000000	0.512438	
mm_41480.1	chr5	91962851	91963051	+	1	NA	NA	NA	69	NR_028429	381650	Mm.159453	NR_028429	ENSMUSG00000102644	Thap6	4930534K21Rik|AI448650	THAP domain containing 6	pseudo	0.075000	0.597015	
mm_33201.1	chr4	126286720	126286920	+	1	NA	NA	NA	26	NM_199473	329941	Mm.296327	NM_199473	ENSMUSG00000056174	Col8a2	AI429819	collagen, type VIII, alpha 2	protein-coding	0.155000	0.810945	
mm_2657.1	chr1	125677062	125677262	+	1	NA	NA	NA	166	NM_027677	71111	Mm.32727	NM_027677	ENSMUSG00000026343	Gpr39	4933415E13Rik	G protein-coupled receptor 39	protein-coding	0.040000	0.567164	
mm_36172.1	chr4	62085894	62086094	-	1	NA	NA	NA	1318	NM_001039544	17842	Mm.250267	NM_010845	ENSMUSG00000066154	Mup3	MUP15|MUPIII|Mup-3|Mup25	major urinary protein 3	protein-coding	0.010000	0.323383	-68(CCTTATATAAAA,+,0.00),40(GTATATAAAAAG,-,0.00)
mm_59182.1	chr7	24462365	24462565	+	1	NA	NA	NA	-18	NM_011113	18793	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.035000	0.641791	
mm_104671.1	chr11	97661642	97661842	-	1	NA	NA	NA	-1670	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.030000	0.601990	
mm_159319.1	chr3	15426378	15426578	-	1	NA	NA	NA	-51	NM_001002898	320832	Mm.330924	NM_178792	ENSMUSG00000095788	Sirpb1a	9930027N05Rik|SIRP-beta|Sirpb|Sirpb1	signal-regulatory protein beta 1A	protein-coding	0.000000	0.388060	
mm_51464.1	chr6	82402937	82403137	+	1	NA	NA	NA	562	NM_009313	21336	Mm.8055	NM_009313	ENSMUSG00000030043	Tacr1	Nk1r|Spr|Tac1r	tachykinin receptor 1	protein-coding	0.040000	0.567164	-32(GGTTATAAAAGC,-,0.00)
mm_64068.1	chr7	140882304	140882504	+	1	NA	NA	NA	10	NM_011875	23997	Mm.29760	NM_011875	ENSMUSG00000025487	Psmd13	S11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	protein-coding	0.085000	0.611940	
mm_127717.1	chr15	103034567	103034767	+	1	NA	NA	NA	272	NM_013553	15423	Mm.1351	NM_013553	ENSMUSG00000075394	Hoxc4	Hox-3.5	homeobox C4	protein-coding	0.055000	0.462687	
mm_42525.1	chr5	115610344	115610544	+	1	NA	NA	NA	21372	NR_027810	66123	Mm.133063	NM_021417	ENSMUSG00000107121	1110006O24Rik	-	RIKEN cDNA 1110006O24 gene	ncRNA	0.010000	0.492537	
mm_78517.1	chr9	32926513	32926713	+	1	NA	NA	NA	2353	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.010000	0.432836	76(CCCTTTAGGGAA,+,0.00)
mm_103194.1	chr11	70646828	70647028	-	1	NA	NA	NA	111	NM_024211	67863	Mm.296082	NM_024211	ENSMUSG00000014606	Slc25a11	2310022P18Rik|2oxoc	solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	protein-coding	0.125000	0.721393	
mm_1064.1	chr1	59119742	59119942	+	1	NA	NA	NA	-36	NM_001037812	381259	Mm.261275	NM_001033449	ENSMUSG00000038079	Tmem237	AI853305|Als2cr4|Gm972	transmembrane protein 237	protein-coding	0.105000	0.746269	
mm_61634.1	chr7	80261130	80261330	+	1	NA	NA	NA	15	NM_031375	83485	Mm.21175	NM_031375	ENSMUSG00000047084	Ngrn	AW552001	neugrin, neurite outgrowth associated	protein-coding	0.110000	0.606965	
mm_166192.1	chr5	34001052	34001252	+	1	NA	NA	NA	5168	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.055000	0.641791	
mm_71989.1	chr8	70616773	70616973	+	1	NA	NA	NA	29	NM_153074	211228	Mm.132939	NM_153074	ENSMUSG00000049988	Lrrc25	Mapa	leucine rich repeat containing 25	protein-coding	0.030000	0.611940	
mm_121811.1	chr14	20388820	20389020	-	1	NA	NA	NA	-10	NM_134081	108671	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	0.110000	0.681592	
mm_75376.1	chr8	45333148	45333348	-	1	NA	NA	NA	-52	NM_133969	102294	Mm.245297	NM_133969	ENSMUSG00000079057	Cyp4v3	AU043077|AW111961|Cyp4v2	cytochrome P450, family 4, subfamily v, polypeptide 3	protein-coding	0.070000	0.572139	
mm_166248.1	chr5	77266097	77266297	+	1	NA	NA	NA	703	NM_011263	19712	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.145000	0.786070	
mm_168077.1	chr10	113119105	113119305	+	1	NA	NA	NA	-190179	NM_001033474	382423	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132|ENSMUSG00000074747	ataxin 7-like 3B	protein-coding	0.005000	0.393035	-51(GCCCTTAAAAAG,-,0.00),-49(CCTTAAAAAGTA,+,0.00),39(TGCTATAAAAGA,-,0.00)
mm_101946.1	chr11	50217723	50217923	-	1	NA	NA	NA	-7003	NM_011018	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.010000	0.482587	-52(CTATATATAAGC,-,0.00)
mm_32639.1	chr4	115056673	115056873	+	1	NA	NA	NA	347	NM_011527	21349	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.145000	0.736318	
mm_7947.1	chr1	133915024	133915224	-	1	NA	NA	NA	6277	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.035000	0.567164	
mm_658.1	chr1	40434709	40434909	+	1	NA	NA	NA	-4820	NM_001025602	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.000000	0.447761	
mm_135448.1	chr16	45653990	45654190	-	1	NA	NA	NA	28	NM_145389	212998	Mm.97511	NM_145389	ENSMUSG00000033187	BC016579	-	cDNA sequence, BC016579	protein-coding	0.065000	0.646766	
mm_87464.1	chr10	51485629	51485829	+	1	NA	NA	NA	5117	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.015000	0.487562	
mm_152214.1	chr19	7966500	7966700	-	1	NA	NA	NA	-573	NM_134256	171405	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	Oat9|mOAT6-L|mOAT6-S	solute carrier family 22, member 27	protein-coding	0.005000	0.298507	-64(CCTTTTAAAATA,+,0.00),0(GATTTTAAAAGA,-,0.00)
mm_85001.1	chr9	86880308	86880508	-	1	NA	NA	NA	-11	NM_001277982	20616	Mm.281651	NM_013669	ENSMUSG00000033419	Snap91	91kDa|AP180|F1-20|mKIAA0656	synaptosomal-associated protein 91	protein-coding	0.140000	0.771144	
mm_74838.1	chr8	23237552	23237752	-	1	NA	NA	NA	16	NM_024240	109145	Mm.27945	NM_024240	ENSMUSG00000031546	Gins4	2810037C03Rik|4933405K01Rik|Sld5	GINS complex subunit 4 (Sld5 homolog)	protein-coding	0.115000	0.691542	
mm_38295.1	chr4	136892802	136893002	-	1	NA	NA	NA	12	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.020000	0.562189	
mm_124854.1	chr15	9528434	9528634	+	1	NA	NA	NA	1342	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.000000	0.363184	
mm_19707.1	chr2	103796939	103797139	-	1	NA	NA	NA	39	NM_001111290	53872	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	0.150000	0.721393	
mm_89505.1	chr10	94073942	94074142	+	1	NA	NA	NA	38041	NM_053072	13998	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	0.010000	0.457711	
mm_34861.1	chr4	155553327	155553527	+	1	NA	NA	NA	-8965	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.020000	0.517413	
mm_84729.1	chr9	75038372	75038572	-	1	NA	NA	NA	740	NM_021548	59046	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	0.040000	0.427861	
mm_74366.1	chr8	128374910	128375110	+	1	NA	NA	NA	15769	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.005000	0.457711	
mm_4006.1	chr1	164796664	164796864	+	1	NA	NA	NA	32	NM_019759	56429	Mm.28935	NM_019759	ENSMUSG00000026574	Dpt	1810032B19Rik|5033416F05Rik|EQ-1|Eq1	dermatopontin	protein-coding	0.025000	0.542289	
mm_85041.1	chr9	88959007	88959207	-	1	NA	NA	NA	2187	NM_009742	12044	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0.015000	0.452736	
mm_90644.1	chr10	128720040	128720240	+	1	NA	NA	NA	13882	NM_021882	20431	Mm.16756	NM_021882	ENSMUSG00000025359	Pmel	D10H12S53E|D12S53Eh|Pmel17|Si|Silv|gp100|gp87	premelanosome protein	protein-coding	0.015000	0.417910	25(GCTTTTAAATCT,+,0.00)
mm_145036.1	chr18	39362479	39362679	+	1	NA	NA	NA	124666	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.025000	0.587065	
mm_139949.1	chr17	71204570	71204770	+	1	NA	NA	NA	16	NM_001164885	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.005000	0.402985	-40(TTTTTTAAAGAC,+,0.00)
mm_20969.1	chr2	151972940	151973140	-	1	NA	NA	NA	354	NM_001289151	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.015000	0.552239	-36(GGGTATAAAAGC,-,0.00)
mm_14950.1	chr2	151973365	151973565	+	1	NA	NA	NA	-71	NM_001289151	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.055000	0.582090	
mm_2039.1	chr1	87225825	87226025	+	1	NA	NA	NA	11986	NM_001039169	26987	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0.030000	0.522388	
mm_115709.1	chr13	14612937	14613137	-	1	NA	NA	NA	0	NM_029271	75398	Mm.36511	NM_029271	ENSMUSG00000015672	Mrpl32	0610033O15Rik	mitochondrial ribosomal protein L32	protein-coding	0.080000	0.631841	
mm_151394.1	chr19	56436597	56436797	+	1	NA	NA	NA	-24940	NM_001164263	226245	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	0.040000	0.557214	
mm_55176.1	chr6	51990258	51990458	-	1	NA	NA	NA	22191	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.000000	0.308458	
mm_149109.1	chr19	8953812	8954012	+	1	NA	NA	NA	80	NM_197993	70044	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	0.110000	0.562189	
mm_69468.1	chr7	133702420	133702620	-	1	NA	NA	NA	-20	NM_001302087	22276	Mm.3160	NM_009479	ENSMUSG00000030979	Uros	AI415298|UROIIIS|Uros3	uroporphyrinogen III synthase	protein-coding	0.035000	0.522388	
mm_117842.1	chr13	98692673	98692873	-	1	NA	NA	NA	2058	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.010000	0.467662	
mm_125324.1	chr15	38470640	38470840	+	1	NA	NA	NA	19807	NR_105916	102465574		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.100000	0.731343	
mm_79062.1	chr9	46230171	46230371	+	1	NA	NA	NA	1641	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.050000	0.592040	
mm_87639.1	chr10	58359783	58359983	+	1	NA	NA	NA	-11571	NM_201242	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.005000	0.358209	-66(CTCTATAAAAGT,-,0.00)
mm_80814.1	chr9	96525469	96525669	+	1	NA	NA	NA	-46894	NM_001311135	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.015000	0.537313	
mm_59574.1	chr7	28115525	28115725	+	1	NA	NA	NA	-13841	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.020000	0.542289	
mm_127308.1	chr15	100227835	100228035	+	1	NA	NA	NA	76	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.145000	0.761194	
mm_9156.1	chr1	170959655	170959855	-	1	NA	NA	NA	16316	NM_001077189	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.000000	0.373134	-74(AGCTATTTAAGC,-,0.00)
mm_43197.1	chr5	129020337	129020537	+	1	NA	NA	NA	281	NM_009391	19384	Mm.297440	NM_009391	ENSMUSG00000029430	Ran	-	RAN, member RAS oncogene family	protein-coding	0.155000	0.766169	
mm_159662.1	chr4	150406201	150406401	+	1	NA	NA	NA	124385	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.040000	0.507463	
mm_152109.1	chr19	6941726	6941926	-	1	NA	NA	NA	-35	NM_007522	12015	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.085000	0.636816	
mm_24505.1	chr3	92484038	92484238	+	1	NA	NA	NA	1743	NM_009264	20753	Mm.331191	NM_009264	ENSMUSG00000050359	Sprr1a	AI528815|SPR1a|mSPRR1A	small proline-rich protein 1A	protein-coding	0.000000	0.457711	
mm_72835.1	chr8	88276235	88276435	+	1	NA	NA	NA	3932	NM_007406	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.010000	0.452736	
mm_26765.1	chr3	8829623	8829823	-	1	NA	NA	NA	94134	NM_025434	66230	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.020000	0.492537	
mm_123100.1	chr14	55881951	55882151	-	1	NA	NA	NA	2205	NM_019820	56410	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0.015000	0.482587	27(TCTTTTAAGGTC,+,0.00)
mm_160480.1	chr8	122495270	122495470	-	1	NA	NA	NA	19227	NM_153775	66965	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0.005000	0.532338	
mm_107110.1	chr12	17992733	17992933	+	1	NA	NA	NA	302019	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.145000	0.771144	
mm_13274.1	chr2	99800115	99800315	+	1	NA	NA	NA	-1824533	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.010000	0.432836	
mm_16529.1	chr2	181550283	181550483	+	1	NA	NA	NA	-28097	NR_027289	100271841	Mm.438007	NR_027289	ENSMUSG00000010492	Uckl1os	Gm16119|OTTMUSG00000030649	uridine-cytidine kinase 1-like 1, opposite strand	ncRNA	0.005000	0.572139	
mm_50211.1	chr6	42264983	42265183	+	1	NA	NA	NA	98	NM_007610	12366	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	0.105000	0.711443	
mm_89894.1	chr10	110878030	110878230	+	1	NA	NA	NA	18377	NR_045979	75630	Mm.392786	NR_045979	ENSMUSG00000101801	1700020G17Rik	4930480D05Rik	RIKEN cDNA 1700020G17 gene	ncRNA	0.025000	0.532338	
mm_132685.1	chr16	43072102	43072302	+	1	NA	NA	NA	116622	NR_002445	170658	Mm.375824	NR_002445		BC002163	-	NADH dehydrogenase Fe-S protein 5 pseudogene	pseudo	0.005000	0.432836	
mm_138217.1	chr17	34311970	34312170	+	1	NA	NA	NA	6203	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.005000	0.462687	11(GGACATAAAAGG,-,0.00)
mm_71982.1	chr8	70596738	70596938	+	1	NA	NA	NA	2357	NM_023627	71780	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.050000	0.621891	
mm_58850.1	chr7	16845719	16845919	+	1	NA	NA	NA	2754	NM_178900	101540	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.035000	0.572139	
mm_153614.1	chr19	43986029	43986229	-	1	NA	NA	NA	391	NM_030703	93721	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	0.075000	0.577114	
mm_161345.1	chr14	52410940	52411140	-	1	NA	NA	NA	-113	NM_146431	258423	Mm.377492	NM_146431	ENSMUSG00000063106	Olfr1510	MOR223-6	olfactory receptor 1510	protein-coding	0.000000	0.407960	
mm_165669.1	chr3	89226149	89226349	+	1	NA	NA	NA	949	NR_030579	100124470		NR_030579	ENSMUSG00000076255	Mir92b	Mirn92b|mir-92b|mmu-mir-92b	microRNA 92b	ncRNA	0.010000	0.606965	
mm_62330.1	chr7	100493260	100493460	+	1	NA	NA	NA	2	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.105000	0.686567	
mm_47417.1	chr5	123140013	123140213	-	1	NA	NA	NA	-2080	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.030000	0.447761	
mm_69819.1	chr7	141265151	141265351	-	1	NA	NA	NA	1173	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.025000	0.601990	
mm_62073.1	chr7	92761270	92761470	+	1	NA	NA	NA	19656	NM_029494	75985	Mm.323004	NM_029494	ENSMUSG00000030643	Rab30	5033421K01Rik|AI323892|Rsb30	RAB30, member RAS oncogene family	protein-coding	0.030000	0.512438	
mm_153138.1	chr19	34246040	34246240	-	1	NA	NA	NA	9233	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.035000	0.572139	
mm_112138.1	chr12	113000577	113000777	-	1	NA	NA	NA	-56	NM_028193	72308	Mm.196721	NM_028193	ENSMUSG00000011158	Brf1	2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90	BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit	protein-coding	0.125000	0.736318	
mm_28118.1	chr3	86901911	86902111	-	1	NA	NA	NA	18873	NM_001195496	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.005000	0.333333	
mm_32570.1	chr4	109843709	109843909	+	1	NA	NA	NA	-134216	NM_172296	242620	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0.005000	0.472637	
mm_50456.1	chr6	48907579	48907779	+	1	NA	NA	NA	2693	NM_001161621	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.015000	0.577114	
mm_16597.1	chr2	4959676	4959876	-	1	NA	NA	NA	-16346	NM_001311208	68527	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding	0.035000	0.542289	
mm_46613.1	chr5	108065429	108065629	-	1	NA	NA	NA	-145	NM_001253877	17765	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0.090000	0.547264	47(GTCTTTTAAAAA,-,0.00)
mm_112057.1	chr12	111907908	111908108	-	1	NA	NA	NA	47	NM_011625	21981	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.180000	0.810945	
mm_137898.1	chr17	31681569	31681769	+	1	NA	NA	NA	3738	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.015000	0.522388	
mm_91127.1	chr10	19591754	19591954	-	1	NA	NA	NA	-95	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.040000	0.597015	
mm_28402.1	chr3	90242423	90242623	-	1	NA	NA	NA	27	NM_001307935	78284	Mm.299952	NM_030080	ENSMUSG00000027938	Creb3l4	1700012K17Rik|5330432F22Rik|AIBZIP|AV040530|AV258827|CREB4|JAL|TISP40|acre1	cAMP responsive element binding protein 3-like 4	protein-coding	0.025000	0.437811	
mm_38385.1	chr4	138806181	138806381	-	1	NA	NA	NA	12976	NM_011110	18784	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	0.015000	0.532338	
mm_47830.1	chr5	134274949	134275149	-	1	NA	NA	NA	39711	NM_001080746	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.020000	0.417910	
mm_49914.1	chr6	39035457	39035657	+	1	NA	NA	NA	32029	NR_040523	69986	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.000000	0.437811	
mm_56257.1	chr6	90782420	90782620	-	1	NA	NA	NA	27603	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.035000	0.527363	
mm_23190.1	chr3	40954940	40955140	+	1	NA	NA	NA	4409	NM_001040399	214048	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0.005000	0.303483	
mm_59775.1	chr7	28835767	28835967	+	1	NA	NA	NA	1697	NM_010707	16857	Mm.210336	NM_010707		Lgals6	galectin-6	lectin, galactose binding, soluble 6	protein-coding	0.030000	0.562189	
mm_90216.1	chr10	121033872	121034072	+	1	NA	NA	NA	-32	NM_011915	24117	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0.105000	0.691542	
mm_62524.1	chr7	102230947	102231147	+	1	NA	NA	NA	8019	NR_111937	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.000000	0.487562	
mm_32343.1	chr4	104766262	104766462	+	1	NA	NA	NA	45	NM_001316671	110382	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding	0.025000	0.512438	
mm_141529.1	chr17	31844276	31844476	-	1	NA	NA	NA	11416	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.025000	0.263682	-79(GCCTATTTAAAG,-,0.00),-77(CTATTTAAAGAC,+,0.00)
mm_10257.1	chr2	9368387	9368587	+	1	NA	NA	NA	178972	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.015000	0.447761	-42(CCTTATCAAGTG,+,0.00)
mm_158639.1	chrX	155216254	155216454	-	1	NA	NA	NA	95	NM_009121	20229	Mm.2734	NM_009121	ENSMUSG00000025283	Sat1	AA617398|SSAT|Sat	spermidine/spermine N1-acetyl transferase 1	protein-coding	0.070000	0.577114	-26(GGACTTAAAAGG,-,0.00)
mm_172877.1	chr9	44604548	44604748	+	1	NA	NA	NA	-244	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.135000	0.771144	
mm_102497.1	chr11	60416939	60417139	-	1	NA	NA	NA	60	NM_145427	246782	Mm.41651	NM_145427	ENSMUSG00000042709	Atpaf2	ATP12|ATP12p	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding	0.105000	0.661692	
mm_88469.1	chr10	77581687	77581887	+	1	NA	NA	NA	20	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.105000	0.661692	
mm_138269.1	chr17	34604687	34604887	+	1	NA	NA	NA	-1074	NM_001163379	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.030000	0.552239	
mm_58183.1	chr6	142964018	142964218	-	1	NA	NA	NA	334	NM_011374	20449	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0.080000	0.681592	
mm_125772.1	chr15	74588312	74588512	+	1	NA	NA	NA	47906	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.030000	0.601990	
mm_167578.1	chr9	44767312	44767512	+	1	NA	NA	NA	396	NM_145985	213827	Mm.371682	NM_145985	ENSMUSG00000032096	Arcn1	4632432M07Rik|nur17	archain 1	protein-coding	0.095000	0.656716	
mm_35293.1	chr4	21890557	21890757	-	1	NA	NA	NA	10982	NM_172687	230027	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	0.005000	0.363184	22(TGGTATATATGG,-,0.00)
mm_164590.1	chr17	26535244	26535444	+	1	NA	NA	NA	-26168	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.015000	0.527363	
mm_11819.1	chr2	44243041	44243241	+	1	NA	NA	NA	-177817	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.040000	0.462687	
mm_15863.1	chr2	164832808	164833008	+	1	NA	NA	NA	36	NM_001038492	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.080000	0.606965	
mm_116796.1	chr13	53533163	53533363	-	1	NA	NA	NA	-60483	NM_013601	17702	Mm.1763	NM_013601	ENSMUSG00000021469	Msx2	BB122635|Hox-8|Hox8|Hox8.1	msh homeobox 2	protein-coding	0.040000	0.542289	
mm_126020.1	chr15	76690469	76690669	+	1	NA	NA	NA	-6157	NM_182805	76282	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	0.020000	0.606965	
mm_21152.1	chr2	154421169	154421369	-	1	NA	NA	NA	-13185	NM_009228	20648	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	0.015000	0.532338	-1(CCATTTATGGAG,+,0.00)
mm_5954.1	chr1	56971193	56971393	-	1	NA	NA	NA	41	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.020000	0.547264	
mm_134838.1	chr16	26371568	26371768	-	1	NA	NA	NA	171	NM_016674	12737	Mm.289441	NM_016674	ENSMUSG00000022512	Cldn1	AI596271	claudin 1	protein-coding	0.045000	0.606965	
mm_102655.1	chr11	63887667	63887867	-	1	NA	NA	NA	34517	NM_018805	54710	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0.000000	0.358209	
mm_79810.1	chr9	64177666	64177866	+	1	NA	NA	NA	-1531	NM_183316	330959	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	0.020000	0.457711	83(GACTATTAAAGG,-,0.00)
mm_168386.1	chr11	24040771	24040971	-	1	NA	NA	NA	-37185	NM_016707	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.025000	0.467662	
mm_4207.1	chr1	171250325	171250525	+	1	NA	NA	NA	296	NM_172845	240913	Mm.491147	NM_172845	ENSMUSG00000006403	Adamts4	ADAM-TS4|ADAMTS-2|ADMP-1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	protein-coding	0.015000	0.562189	
mm_145889.1	chr18	65582196	65582396	+	1	NA	NA	NA	2066	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.015000	0.502488	
mm_25235.1	chr3	103886143	103886343	+	1	NA	NA	NA	25966	NM_008979	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.025000	0.497512	12(TCTTTTATAGCA,+,0.00)
mm_119613.1	chr14	51114274	51114474	+	1	NA	NA	NA	-2179	NM_203508	219026	Mm.297297	NM_203508	ENSMUSG00000072575	Eddm3b	Fam12|Gm75	epididymal protein 3B	protein-coding	0.020000	0.517413	
mm_146410.1	chr18	84088096	84088296	+	1	NA	NA	NA	38	NM_146090	225791	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.105000	0.706468	
mm_70013.1	chr7	142472028	142472228	-	1	NA	NA	NA	285	NM_019391	16985	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.000000	0.567164	
mm_97050.1	chr11	72441264	72441464	+	1	NA	NA	NA	-14	NM_016776	18432	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	0.085000	0.651741	
mm_168.1	chr1	13094805	13095005	+	1	NA	NA	NA	32258	NM_001081209	383491	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0.010000	0.487562	
mm_108575.1	chr12	84996339	84996539	+	1	NA	NA	NA	118	NM_178363	56531	Mm.153183	NM_178363	ENSMUSG00000021244	Ylpm1	A930013E17Rik|ZAP|Zap3	YLP motif containing 1	protein-coding	0.160000	0.696517	
mm_105000.1	chr11	100362057	100362257	-	1	NA	NA	NA	-6016	NM_010404	15114	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.010000	0.502488	
mm_89482.1	chr10	93640890	93641090	+	1	NA	NA	NA	-59	NM_021320	57764	Mm.483868	NM_021320	ENSMUSG00000020019	Ntn4	-	netrin 4	protein-coding	0.110000	0.701493	
mm_118023.1	chr13	100833241	100833441	-	1	NA	NA	NA	86	NM_022885	69048	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.140000	0.741294	
mm_79890.1	chr9	65294332	65294532	+	1	NA	NA	NA	172	NM_011802	270166	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0.120000	0.706468	
mm_62767.1	chr7	112241769	112241969	+	1	NA	NA	NA	16033	NM_001193305	320878	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0.015000	0.557214	
mm_97117.1	chr11	74830796	74830996	+	1	NA	NA	NA	-28	NM_010813	17428	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.130000	0.751244	
mm_33144.1	chr4	125127357	125127557	+	1	NA	NA	NA	424	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.040000	0.601990	
mm_78361.1	chr9	26733679	26733879	+	1	NA	NA	NA	-29	NM_001310766	76898	Mm.218788	NM_029792	ENSMUSG00000045994	B3gat1	0710007K08Rik|AI846286|GlcAT-P|Glcatp|Hnk1	beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	protein-coding	0.195000	0.850746	
mm_72837.1	chr8	88288985	88289185	+	1	NA	NA	NA	19	NM_001037723	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.025000	0.582090	
mm_134597.1	chr16	20619749	20619949	-	1	NA	NA	NA	1429	NM_028420	73047	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	0.105000	0.731343	
mm_31764.1	chr4	63399421	63399621	+	1	NA	NA	NA	-1281	NM_001305432	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.010000	0.582090	
mm_141487.1	chr17	31268256	31268456	-	1	NA	NA	NA	9000	NM_025290	22092	Mm.12743	NM_025290	ENSMUSG00000024033	Rsph1	MCA|Tsga2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding	0.000000	0.417910	
mm_57694.1	chr6	128521973	128522173	-	1	NA	NA	NA	4647	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.010000	0.452736	
mm_88144.1	chr10	69533550	69533750	+	1	NA	NA	NA	-58	NM_170729	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.025000	0.532338	
mm_3215.1	chr1	135840768	135840968	+	1	NA	NA	NA	7	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.040000	0.557214	
mm_106629.1	chr11	120866529	120866729	-	1	NA	NA	NA	-42082	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.005000	0.512438	
mm_145448.1	chr18	60212497	60212697	+	1	NA	NA	NA	520	NM_001033767	240327	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.005000	0.388060	
mm_78775.1	chr9	43743931	43744131	+	1	NA	NA	NA	-545	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	0.125000	0.716418	
mm_140267.1	chr17	84683021	84683221	+	1	NA	NA	NA	0	NM_001347418	67470	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP-binding cassette, sub-family G (WHITE), member 8	protein-coding	0.010000	0.527363	
mm_138281.1	chr17	34608909	34609109	+	1	NA	NA	NA	-5	NM_018862	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.015000	0.537313	
mm_51953.1	chr6	91755066	91755266	+	1	NA	NA	NA	52227	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.020000	0.353234	
mm_16210.1	chr2	173065879	173066079	+	1	NA	NA	NA	44077	NM_019547	56190	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.025000	0.497512	
mm_82176.1	chr9	123851230	123851430	+	1	NA	NA	NA	331	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.040000	0.562189	
mm_40716.1	chr5	65934864	65935064	+	1	NA	NA	NA	-32160	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.020000	0.562189	
mm_47166.1	chr5	120743553	120743753	-	1	NA	NA	NA	6195	NM_145227	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.020000	0.477612	
mm_109922.1	chr12	8539487	8539687	-	1	NA	NA	NA	-21	NM_001286385	328059	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	0.035000	0.537313	
mm_40266.1	chr5	38505193	38505393	+	1	NA	NA	NA	-3141	NM_145559	117591	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.010000	0.567164	
mm_131255.1	chr16	10769892	10770092	+	1	NA	NA	NA	15544	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.005000	0.577114	
mm_4387.1	chr1	172219422	172219622	+	1	NA	NA	NA	373	NM_009813	12372	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.045000	0.562189	
mm_58378.1	chr6	149101580	149101780	-	1	NA	NA	NA	0	NM_177192	320560	Mm.426874	NM_177192	ENSMUSG00000030313	Dennd5b	9330160C06Rik|AI852444|D030011O10Rik|ENSMUSG00000072657|Gm17524	DENN/MADD domain containing 5B	protein-coding	0.175000	0.791045	
mm_160792.1	chr11	3202277	3202477	+	1	NA	NA	NA	24	NM_001166548	74203	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0.140000	0.731343	
mm_126799.1	chr15	87327132	87327332	+	1	NA	NA	NA	-217067	NM_001252310	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.015000	0.542289	
mm_64606.1	chr7	3249527	3249727	-	1	NA	NA	NA	113	NM_001033431	378425	Mm.277152	NM_001033431	ENSMUSG00000078817	Nlrp12	Nalp12|PYPAF7	NLR family, pyrin domain containing 12	protein-coding	0.020000	0.482587	41(CCTTTTAGAGAG,+,0.00)
mm_123645.1	chr14	68655669	68655869	-	1	NA	NA	NA	73	NM_010082	13522	Mm.117450	NM_010082	ENSMUSG00000014725	Adam28	C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII	a disintegrin and metallopeptidase domain 28	protein-coding	0.020000	0.542289	3(TCCCTTAAGAGG,-,0.00),4(CCCTTAAGAGGA,+,0.00)
mm_73356.1	chr8	105518645	105518845	+	1	NA	NA	NA	-1	NM_008289	15484	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	0.075000	0.671642	-33(CGCTTTATAAGC,-,0.00)
mm_172386.1	chr7	133179769	133179969	+	1	NA	NA	NA	51618	NR_046279	74970	Mm.491044	NR_046279	ENSMUSG00000109816	4930483O08Rik	-	RIKEN cDNA 4930483O08 gene	ncRNA	0.005000	0.467662	
mm_99284.1	chr11	101320630	101320830	+	1	NA	NA	NA	-4333	NM_178932	237940	Mm.302277	NM_178932	ENSMUSG00000078651	Aoc2	RAO	amine oxidase, copper containing 2 (retina-specific)	protein-coding	0.015000	0.492537	
mm_37958.1	chr4	133339209	133339409	-	1	NA	NA	NA	6	NM_199306	230796	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	0.110000	0.666667	
mm_157670.1	chrX	59134286	59134486	-	1	NA	NA	NA	50	NM_010200	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding	0.110000	0.726368	
mm_126924.1	chr15	91672968	91673168	+	1	NA	NA	NA	-156	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.075000	0.621891	-89(CTCCCTATAGGG,-,0.00),-87(CCCTATAGGGGG,+,0.00)
mm_170251.1	chr1	80967732	80967932	+	1	NA	NA	NA	-109485	NM_172849	241134	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	0.015000	0.492537	-22(GTGTTTTTAAGG,-,0.00),-20(GTTTTTAAGGTA,+,0.00)
mm_9596.1	chr1	175453894	175454094	-	1	NA	NA	NA	38551	NM_011880	24012	Mm.7956	NM_011880	ENSMUSG00000026527	Rgs7	-	regulator of G protein signaling 7	protein-coding	0.000000	0.313433	
mm_74241.1	chr8	124792877	124793077	+	1	NA	NA	NA	-42	NM_198632	330863	Mm.422769	NM_198632	ENSMUSG00000036913	Trim67	D130049O21Rik|TNL	tripartite motif-containing 67	protein-coding	0.120000	0.696517	
mm_160496.1	chr9	4383422	4383622	+	1	NA	NA	NA	-15	NM_145609	78100	Mm.206549	NM_145609	ENSMUSG00000041124	Msantd4	8430410K20Rik|Mysantd4	Myb/SANT-like DNA-binding domain containing 4 with coiled-coils	protein-coding	0.000000	0.398010	
mm_28819.1	chr3	96269354	96269554	-	1	NA	NA	NA	-246	NM_175666	319189	Mm.297655	NM_175666	ENSMUSG00000105827	Hist2h2bb	H2b-616	histone cluster 2, H2bb	protein-coding	0.025000	0.427861	
mm_118114.1	chr13	103921724	103921924	-	1	NA	NA	NA	-1238	NM_001005868	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.060000	0.517413	
mm_20799.1	chr2	144266102	144266302	-	1	NA	NA	NA	0	NR_030762	100313519	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.020000	0.457711	
mm_166364.1	chr5	124186564	124186764	+	1	NA	NA	NA	518	NM_001289472	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.030000	0.582090	
mm_158451.1	chrX	140543063	140543263	-	1	NA	NA	NA	24	NM_010286	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.015000	0.532338	-57(TCCTATATAAAG,-,0.00)
mm_96498.1	chr11	68153779	68153979	+	1	NA	NA	NA	-67013	NR_105833	102465219		NR_105833	ENSMUSG00000099174	Mir6406	Gm27981|mmu-mir-6406	microRNA 6406	ncRNA	0.005000	0.388060	
mm_164894.1	chr18	65023643	65023843	+	1	NA	NA	NA	216	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.030000	0.597015	
mm_50614.1	chr6	49823580	49823780	+	1	NA	NA	NA	970	NM_023456	109648	Mm.154796	NM_023456	ENSMUSG00000029819	Npy	0710005A05Rik	neuropeptide Y	protein-coding	0.050000	0.567164	
mm_105902.1	chr11	114982913	114983113	-	1	NA	NA	NA	6873	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.000000	0.427861	
mm_159251.1	chr2	152415669	152415869	+	1	NA	NA	NA	182	NR_110368	228778	Mm.70959	NM_177656	ENSMUSG00000032680	6820408C15Rik	-	RIKEN cDNA 6820408C15 gene	protein-coding	0.025000	0.497512	
mm_2608.1	chr1	120340475	120340675	+	1	NA	NA	NA	-7	NM_207233	226359	Mm.337409	NM_207233	ENSMUSG00000036907	C1ql2	BC040774|CTRP10	complement component 1, q subcomponent-like 2	protein-coding	0.105000	0.666667	
mm_120958.1	chr14	77520035	77520235	+	1	NA	NA	NA	-13267	NR_033141	629678	Mm.390721	NM_001037935	ENSMUSG00000067973	Gm6994	EG629678	predicted gene 6994	ncRNA	0.010000	0.388060	
mm_25844.1	chr3	129217806	129218006	+	1	NA	NA	NA	3974	NM_001287048	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.025000	0.572139	
mm_9723.1	chr1	180193069	180193269	-	1	NA	NA	NA	316	NM_001163290	67426	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0.010000	0.457711	
mm_46945.1	chr5	114910895	114911095	-	1	NA	NA	NA	-12245	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.020000	0.542289	
mm_76904.1	chr8	105827554	105827754	-	1	NA	NA	NA	-90	NM_024445	72236	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	0.035000	0.562189	
mm_120815.1	chr14	75131448	75131648	+	1	NA	NA	NA	425	NM_001247984	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.025000	0.492537	-99(GTTTTTAAAGTT,+,0.00),-27(CTCTTTAAAAGG,-,0.00),-26(TCTTTAAAAGGA,+,0.00),-25(CTTTAAAAGGAC,+,0.00)
mm_170196.1	chr17	6655716	6655916	-	1	NA	NA	NA	15	NM_001166630	100040563	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	0.100000	0.661692	
mm_167616.1	chr9	57075339	57075539	+	1	NA	NA	NA	-937	NM_001110350	20466	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	0.025000	0.527363	-77(ACATTTAAAGGC,+,0.00)
mm_58869.1	chr7	16950061	16950261	+	1	NA	NA	NA	5479	NM_001099636	434128	Mm.483018	NM_001099636	ENSMUSG00000070802	Pnmal2	EG434128	PNMA-like 2	protein-coding	0.070000	0.587065	
mm_140857.1	chr17	23726186	23726386	-	1	NA	NA	NA	-50	NM_023058	268930	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	0.105000	0.661692	
mm_144051.1	chr17	90455940	90456140	-	1	NA	NA	NA	-160	NM_001346959	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.055000	0.542289	
mm_102924.1	chr11	69600548	69600748	-	1	NA	NA	NA	5312	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.005000	0.507463	
mm_68780.1	chr7	122186128	122186328	-	1	NA	NA	NA	3	NM_012016	26918	Mm.20452	NM_012016	ENSMUSG00000030866	Ern2	Ern1|Ire1|Ire1b|ire1-beta|mIre1	endoplasmic reticulum (ER) to nucleus signalling 2	protein-coding	0.045000	0.651741	
mm_172129.1	chr6	3268592	3268792	-	1	NA	NA	NA	-19827	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.040000	0.547264	
mm_105291.1	chr11	102469753	102469953	-	1	NA	NA	NA	30	NM_010575	16399	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0.025000	0.582090	
mm_34902.1	chr4	155638466	155638666	+	1	NA	NA	NA	13697	NM_007661	12537	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	0.020000	0.557214	
mm_145857.1	chr18	65455770	65455970	+	1	NA	NA	NA	24873	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.517413	2(TCTTTAATACAC,+,0.00)
mm_22725.1	chr3	19644371	19644571	+	1	NA	NA	NA	11	NM_001081281	381485	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0.015000	0.492537	-85(GCTTATATGGAC,+,0.00)
mm_63211.1	chr7	126272369	126272569	+	1	NA	NA	NA	-150	NM_145587	104175	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.210000	0.845771	
mm_10839.1	chr2	24949674	24949874	+	1	NA	NA	NA	-3	NM_026021	67187	Mm.296106	NM_026021	ENSMUSG00000026974	Zmynd19	2700064H14Rik|AA536891|AU014915|mizip	zinc finger, MYND domain containing 19	protein-coding	0.185000	0.810945	
mm_27971.1	chr3	80802496	80802696	-	1	NA	NA	NA	195	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.025000	0.537313	
mm_132798.1	chr16	45093986	45094186	+	1	NA	NA	NA	33	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.025000	0.457711	
mm_139591.1	chr17	57225166	57225366	+	1	NA	NA	NA	2870	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.025000	0.492537	74(CTCTTTAGAGTC,+,0.00)
mm_116716.1	chr13	51569243	51569443	-	1	NA	NA	NA	-2259	NM_009167	20418	Mm.131870	NM_009167	ENSMUSG00000021448	Shc3	N-Shc|Rai|ShcC	src homology 2 domain-containing transforming protein C3	protein-coding	0.045000	0.462687	
mm_40526.1	chr5	57919721	57919921	+	1	NA	NA	NA	201740	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.005000	0.417910	
mm_59381.1	chr7	26099027	26099227	+	1	NA	NA	NA	37632	NM_007813	13089	Mm.482696	NM_007813	ENSMUSG00000040583	Cyp2b13	-	cytochrome P450, family 2, subfamily b, polypeptide 13	protein-coding	0.000000	0.328358	
mm_42740.1	chr5	120678452	120678652	+	1	NA	NA	NA	29364	NM_001281999	19415	Mm.41209	NM_013832	ENSMUSG00000029602	Rasal1	MRASAL	RAS protein activator like 1 (GAP1 like)	protein-coding	0.005000	0.472637	
mm_173309.1	chrY	90734600	90734800	+	1	NA	NA	NA	20350	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.427861	
mm_142894.1	chr17	51833189	51833389	-	1	NA	NA	NA	1	NM_001163632	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.060000	0.646766	
mm_158873.1	chrY	1286433	1286633	-	1	NA	NA	NA	80	NM_012008	26900	Mm.302938	NM_012008	ENSMUSG00000069045	Ddx3y	8030469F12Rik|D1Pas1-rs1|Dby	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	protein-coding	0.055000	0.477612	
mm_58667.1	chr7	6995392	6995592	+	1	NA	NA	NA	107	NM_001080965	20871	Mm.261572	NM_020572	ENSMUSG00000070837	Aurkc	AIE1|AIK3|ARK-3|IAK3|Stk13	aurora kinase C	protein-coding	0.030000	0.547264	
mm_156415.1	chrX	140664777	140664977	+	1	NA	NA	NA	-13151	NM_011845	23947	Mm.131097	NM_011845	ENSMUSG00000000266	Mid2	FXY2|Trim1	midline 2	protein-coding	0.060000	0.656716	
mm_159445.1	chr3	130474504	130474704	+	1	NA	NA	NA	-142844	NM_001163587	71760	Mm.29125	NM_027907	ENSMUSG00000019232	Etnppl	1300019H02Rik|AI195447|Agxt2l1	ethanolamine phosphate phospholyase	protein-coding	0.030000	0.472637	-85(CCCTTTAAAAAG,+,0.00),-85(CCCTTTAAAAAG,-,0.00),-84(CCTTTAAAAAGA,+,0.00)
mm_59100.1	chr7	19697382	19697582	+	1	NA	NA	NA	916	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.025000	0.577114	
mm_155605.1	chrX	82954103	82954303	+	1	NA	NA	NA	5333	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.005000	0.353234	
mm_10298.1	chr2	10448994	10449194	+	1	NA	NA	NA	-17569	NR_130333	100526481		NR_130333	ENSMUSG00000092793	Mir466m	mmu-mir-466m	microRNA 466m	ncRNA	0.010000	0.368159	
mm_156406.1	chrX	140277661	140277861	+	1	NA	NA	NA	-33187	NR_037208	100499512		NR_037208	ENSMUSG00000093102	Mir3475	mir-3475|mmu-mir-3475	microRNA 3475	ncRNA	0.130000	0.771144	
mm_126577.1	chr15	82274907	82275107	+	1	NA	NA	NA	72	NM_011889	24050	Mm.309707	NM_011889	ENSMUSG00000022456	Sept3	3110018K01Rik|AV154067|B530002E20Rik|Sep3	septin 3	protein-coding	0.080000	0.626866	
mm_151738.1	chr19	4942975	4943175	-	1	NA	NA	NA	17	NM_172835	240518	Mm.277580	NM_172835	ENSMUSG00000024901	Peli3	6030441F14Rik|A930011L17|BC028931	pellino 3	protein-coding	0.100000	0.761194	
mm_11234.1	chr2	29803526	29803726	+	1	NA	NA	NA	946	NM_011989	26569	Mm.330113	NM_011989	ENSMUSG00000059316	Slc27a4	BB144259|FATP4	solute carrier family 27 (fatty acid transporter), member 4	protein-coding	0.015000	0.582090	
mm_50119.1	chr6	41534987	41535187	+	1	NA	NA	NA	13311	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.517413	
mm_142105.1	chr17	35835673	35835873	-	1	NA	NA	NA	2528	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.050000	0.537313	
mm_36901.1	chr4	107803287	107803487	-	1	NA	NA	NA	1128	NM_001080926	16975	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0.095000	0.676617	
mm_118255.1	chr13	112354160	112354360	-	1	NA	NA	NA	65742	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.005000	0.537313	
mm_60754.1	chr7	45513606	45513806	+	1	NA	NA	NA	0	NM_008807	56734	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0.010000	0.532338	-50(GTCCCTTTAAGG,-,0.00),-48(CCCTTTAAGGAA,+,0.00)
mm_123175.1	chr14	57571470	57571670	-	1	NA	NA	NA	-1	NM_026526	68043	Mm.45225	NM_026526	ENSMUSG00000021951	Eef1akmt1	2510005D08Rik|AW045965|Ayu21-96|Gt(pU21)96Imeg|GtAyu21-96|N6amt2	eukaryotic translation elongation factor 1 alpha lysine methyltransferase 1	protein-coding	0.090000	0.661692	
mm_58582.1	chr7	4922505	4922705	+	1	NA	NA	NA	354	NM_201355	269854	Mm.42652	NM_201355	ENSMUSG00000035285	Nat14	BC047219	N-acetyltransferase 14	protein-coding	0.025000	0.572139	
mm_56.1	chr1	6537307	6537507	+	1	NA	NA	NA	50176	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.015000	0.263682	
mm_107875.1	chr12	69963326	69963526	+	1	NA	NA	NA	17	NR_036607	100040999	Mm.394588	NR_036607	ENSMUSG00000079076	Gm3086	-	RuvB-like protein 1 pseudogene	pseudo	0.020000	0.398010	
mm_26072.1	chr3	136670160	136670360	+	1	NA	NA	NA	194	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.160000	0.761194	
mm_17350.1	chr2	26607970	26608170	-	1	NA	NA	NA	-3653	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.005000	0.517413	
mm_66495.1	chr7	45061538	45061738	-	1	NA	NA	NA	14	NM_022999	65116	Mm.379098	NM_022999	ENSMUSG00000007837	Prrg2	1600014G02Rik|2510041M06Rik|N4WBP1	proline-rich Gla (G-carboxyglutamic acid) polypeptide 2	protein-coding	0.025000	0.626866	
mm_61164.1	chr7	59228860	59229060	+	1	NA	NA	NA	208	NM_011668	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|mKIAA4216	ubiquitin protein ligase E3A	protein-coding	0.120000	0.666667	
mm_68817.1	chr7	126081991	126082191	-	1	NA	NA	NA	320	NM_001101488	269994	Mm.39599	NM_001101488	ENSMUSG00000046182	Gsg1l	AI852434|C230098I05Rik|G630023A01Rik|Gm637|g1l	GSG1-like	protein-coding	0.125000	0.736318	
mm_11023.1	chr2	26628408	26628608	+	1	NA	NA	NA	51	NM_019833	56279	Mm.279863	NM_019833	ENSMUSG00000036186	Fam69b	AB030186|AW209000|B230317C12Rik|PIP49	family with sequence similarity 69, member B	protein-coding	0.155000	0.756219	
mm_162028.1	chr19	53143808	53144008	+	1	NA	NA	NA	-89	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.005000	0.457711	
mm_52501.1	chr6	115238873	115239073	+	1	NA	NA	NA	-21	NM_001326560	20965	Mm.441431	NM_013681	ENSMUSG00000009394	Syn2	2900074L19Rik|AI836018|AI841723	synapsin II	protein-coding	0.000000	0.512438	
mm_152031.1	chr19	6084615	6084815	-	1	NA	NA	NA	176	NM_024231	81909	Mm.289471	NM_024231	ENSMUSG00000024792	Zfpl1	1500015B20Rik	zinc finger like protein 1	protein-coding	0.070000	0.616915	
mm_24365.1	chr3	90086248	90086448	+	1	NA	NA	NA	6827	NM_001293749	59069	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0.005000	0.393035	-32(GCATTTAAAGCA,+,0.00)
mm_59523.1	chr7	27607903	27608103	+	1	NA	NA	NA	667	NM_001331109	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.020000	0.582090	
mm_164009.1	chr14	69840289	69840489	+	1	NA	NA	NA	-18	NM_028560	73523	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0.005000	0.472637	
mm_70239.1	chr8	3353412	3353612	+	1	NA	NA	NA	97	NM_001033378	319493	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0.020000	0.507463	52(AACCATAAAAAG,-,0.00),54(CCATAAAAAGCC,+,0.00)
mm_114519.1	chr13	73264503	73264703	+	1	NA	NA	NA	4106	NM_018885	50916	Mm.103784	NM_018885	ENSMUSG00000021604	Irx4	-	Iroquois related homeobox 4 (Drosophila)	protein-coding	0.050000	0.507463	
mm_65140.1	chr7	19573275	19573475	-	1	NA	NA	NA	-32	NM_027189	69731	Mm.24540	NM_027189	ENSMUSG00000044709	Gemin7	2400008I04Rik|AI120175|AI461688	gem (nuclear organelle) associated protein 7	protein-coding	0.110000	0.731343	
mm_28256.1	chr3	88554353	88554553	-	1	NA	NA	NA	737	NM_033526	94232	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	0.025000	0.472637	
mm_46631.1	chr5	108449085	108449285	-	1	NA	NA	NA	-294	NM_172883	243197	Mm.106818	NM_172883	ENSMUSG00000029490	Mfsd7a	4732482E20Rik|Mfsd7	major facilitator superfamily domain containing 7A	protein-coding	0.030000	0.532338	
mm_46999.1	chr5	115348512	115348712	-	1	NA	NA	NA	343	NM_007748	12861	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	0.095000	0.636816	
mm_62067.1	chr7	92637095	92637295	+	1	NA	NA	NA	-53	NM_028665	73845	Mm.73248	NM_028665	ENSMUSG00000041343	Ankrd42	4931426M20|4933417L02Rik|Ikbn	ankyrin repeat domain 42	protein-coding	0.085000	0.547264	
mm_101883.1	chr11	48945152	48945352	-	1	NA	NA	NA	1158	NM_001281472	621823	Mm.440151	NM_001281472	ENSMUSG00000078153	Psme2b	PA28b-p|PA28b2|Psme2-like|Psme2b-ps	protease (prosome, macropain) activator subunit 2B	protein-coding	0.005000	0.323383	-53(CCTTAAAGAGGA,+,0.00)
mm_120651.1	chr14	70530805	70531005	+	1	NA	NA	NA	84	NM_145219	213469	Mm.41708	NM_145219	ENSMUSG00000033595	Lgi3	AI841179|AW049851	leucine-rich repeat LGI family, member 3	protein-coding	0.105000	0.696517	
mm_28987.1	chr3	101287751	101287951	-	1	NA	NA	NA	88	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.030000	0.507463	
mm_107120.1	chr12	18610027	18610227	+	1	NA	NA	NA	95617	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.110000	0.731343	
mm_156609.1	chrX	153359483	153359683	+	1	NA	NA	NA	121538	NM_173780	245671	Mm.260751	NM_173780	ENSMUSG00000041649	Klf8	A830097P10Rik|BKLF3|ZNF74	Kruppel-like factor 8	protein-coding	0.025000	0.582090	-34(TCCCTTTTAAGG,-,0.00),-33(CCCTTTTAAGGA,-,0.00),-32(CCTTTTAAGGAA,+,0.00)
mm_76585.1	chr8	89033277	89033477	-	1	NA	NA	NA	8642	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.020000	0.472637	80(CTCCATAAAAAG,-,0.00),82(CCATAAAAAGAG,+,0.00)
mm_60292.1	chr7	44012557	44012757	+	1	NA	NA	NA	-21	NM_010644	16618	Mm.439663	NM_010644	ENSMUSG00000053719	Klk1b26	Egfbp2|Klk26|PRECE-2|mGK-26|mGK26	kallikrein 1-related petidase b26	protein-coding	0.000000	0.547264	
mm_33631.1	chr4	132883860	132884060	+	1	NA	NA	NA	498	NM_133887	100226	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	0.050000	0.601990	
mm_93317.1	chr10	98914899	98915099	-	1	NA	NA	NA	-153	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.155000	0.791045	
mm_69520.1	chr7	135528553	135528753	-	1	NA	NA	NA	1	NM_178669	212070	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	0.025000	0.437811	
mm_54470.1	chr6	34910409	34910609	-	1	NA	NA	NA	322	NM_001013366	101240	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.045000	0.616915	
mm_165859.1	chr4	24430636	24430836	-	1	NA	NA	NA	-65726	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.005000	0.467662	
mm_32720.1	chr4	116221594	116221794	+	1	NA	NA	NA	-220	NM_181585	18710	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55pik	phosphatidylinositol 3 kinase, regulatory subunit, polypeptide 3 (p55)	protein-coding	0.065000	0.601990	
mm_153693.1	chr19	44397164	44397364	-	1	NA	NA	NA	10445	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.015000	0.437811	
mm_75854.1	chr8	70698249	70698449	-	1	NA	NA	NA	610	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.030000	0.621891	35(CGCCCTAAAAGC,-,0.00)
mm_70022.1	chr7	142575746	142575946	-	1	NA	NA	NA	1301	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.025000	0.437811	
mm_21287.1	chr2	156970411	156970611	-	1	NA	NA	NA	21600	NM_013865	29812	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0.010000	0.462687	
mm_90149.1	chr10	118141792	118141992	+	1	NA	NA	NA	105	NM_010785	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.145000	0.746269	
mm_20378.1	chr2	128467428	128467628	-	1	NA	NA	NA	-38177	NR_028590	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.015000	0.497512	
mm_15768.1	chr2	164332630	164332830	+	1	NA	NA	NA	-35	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.010000	0.507463	
mm_76053.1	chr8	77689123	77689323	-	1	NA	NA	NA	35229	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	0.010000	0.492537	-36(GGGTATATGAGC,-,0.00)
mm_20385.1	chr2	128967148	128967348	-	1	NA	NA	NA	-154	NM_178404	78751	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	0.105000	0.676617	-8(CCTTTAATACGC,+,0.00)
mm_170634.1	chr1	98589413	98589613	+	1	NA	NA	NA	168389	NM_027584	70866	Mm.389164	NM_027584	ENSMUSG00000026336	Slco6d1	4921511I05Rik	solute carrier organic anion transporter family, member 6d1	protein-coding	0.020000	0.537313	40(GCTTTAAGAACC,+,0.00)
mm_65474.1	chr7	25536978	25537178	-	1	NA	NA	NA	2926	NM_001113368	26367	Mm.439731	NM_007543	ENSMUSG00000054385	Ceacam2	AI267129|Bgp2|Ceacam2-L	carcinoembryonic antigen-related cell adhesion molecule 2	protein-coding	0.020000	0.577114	
mm_45818.1	chr5	87680842	87681042	-	1	NA	NA	NA	14734	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.383085	
mm_82256.1	chr9	4796106	4796306	-	1	NA	NA	NA	28	NM_001113180	14802	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.080000	0.661692	
mm_11336.1	chr2	30654776	30654976	+	1	NA	NA	NA	23135	NR_136917	665635	Mm.450149	NR_136917		Gm14486	OTTMUSG00000016802	predicted gene 14486	ncRNA	0.020000	0.616915	
mm_54211.1	chr6	25689500	25689700	-	1	NA	NA	NA	380	NM_010338	14763	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	0.040000	0.537313	
mm_4015.1	chr1	165485087	165485287	+	1	NA	NA	NA	4	NM_173029	271639	Mm.66952	NM_173029	ENSMUSG00000026567	Adcy10	4930431D04Rik|4931412F17|Sacy|sAC	adenylate cyclase 10	protein-coding	0.020000	0.482587	
mm_3629.1	chr1	152807681	152807881	+	1	NA	NA	NA	7628	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.015000	0.547264	
mm_47791.1	chr5	132258918	132259118	-	1	NA	NA	NA	283325	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.040000	0.517413	
mm_127813.1	chr15	5099040	5099240	-	1	NA	NA	NA	9393	NM_001163138	239319	Mm.31252	NM_001163138	ENSMUSG00000041849	Card6	D730008L15	caspase recruitment domain family, member 6	protein-coding	0.025000	0.497512	
mm_87436.1	chr10	51459162	51459362	+	1	NA	NA	NA	-21350	NM_008147	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.000000	0.457711	
mm_144393.1	chr18	20673562	20673762	+	1	NA	NA	NA	8412	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.025000	0.567164	
mm_152918.1	chr19	28009800	28010000	-	1	NA	NA	NA	1266	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.005000	0.427861	
mm_29995.1	chr3	135587900	135588100	-	1	NA	NA	NA	102389	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.010000	0.532338	
mm_130379.1	chr15	97844186	97844386	-	1	NA	NA	NA	216	NM_001204279	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.025000	0.601990	
mm_71850.1	chr8	68905929	68906129	+	1	NA	NA	NA	25474	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.333333	
mm_89950.1	chr10	111289746	111289946	+	1	NA	NA	NA	-8833	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.000000	0.393035	
mm_150824.1	chr19	44554856	44555056	+	1	NA	NA	NA	459	NM_026061	67264	Mm.2060	NM_026061	ENSMUSG00000025204	Ndufb8	2900010I05Rik|AI987932	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8	protein-coding	0.070000	0.587065	
mm_76738.1	chr8	95143152	95143352	-	1	NA	NA	NA	-712	NM_001145831	16582	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.020000	0.532338	26(AGCTTTTAAAGA,-,0.00),27(GCTTTTAAAGAC,+,0.00)
mm_65632.1	chr7	27553010	27553210	-	1	NA	NA	NA	108	NM_011116	18807	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.075000	0.631841	
mm_115127.1	chr13	104287395	104287595	+	1	NA	NA	NA	-340	NR_136938	108154	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.020000	0.363184	-13(TCTTTAAAACTC,+,0.00)
mm_13736.1	chr2	118112560	118112760	+	1	NA	NA	NA	784	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.015000	0.537313	
mm_35556.1	chr4	41569310	41569510	-	1	NA	NA	NA	117	NM_001159583	71901	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	0.110000	0.691542	
mm_117334.1	chr13	69069850	69070050	-	1	NA	NA	NA	-70409	NM_153534	210044	Mm.390617	NM_153534	ENSMUSG00000021536	Adcy2	mKIAA1060	adenylate cyclase 2	protein-coding	0.005000	0.502488	
mm_166974.1	chr7	44669269	44669469	-	1	NA	NA	NA	1474	NM_001271540	71960	Mm.158289	NM_028021	ENSMUSG00000030739	Myh14	2400004E04Rik|II-C|NHMCII|NMHC II-C	myosin, heavy polypeptide 14	protein-coding	0.050000	0.676617	
mm_42122.1	chr5	110895123	110895323	+	1	NA	NA	NA	15420	NM_001267622	209683	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	0.020000	0.547264	
mm_103484.1	chr11	76509118	76509318	-	1	NA	NA	NA	201	NM_198018	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.045000	0.721393	
mm_59261.1	chr7	24884528	24884728	+	1	NA	NA	NA	-86	NM_023133	20085	Mm.300281	NM_023133	ENSMUSG00000040952	Rps19	Dsk3	ribosomal protein S19	protein-coding	0.125000	0.706468	
mm_75393.1	chr8	45999767	45999967	-	1	NA	NA	NA	-17	NM_001039562	654824	Mm.334517	NM_001039562	ENSMUSG00000050914	Ankrd37	-	ankyrin repeat domain 37	protein-coding	0.070000	0.711443	
mm_22926.1	chr3	31121314	31121514	+	1	NA	NA	NA	26356	NM_001039090	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.010000	0.512438	
mm_102348.1	chr11	58168406	58168606	-	1	NA	NA	NA	33	NM_172558	216766	Mm.275349	NM_172558	ENSMUSG00000037275	Gemin5	AA407055|AA407208|AI451603|BB194447|C330013N08	gem (nuclear organelle) associated protein 5	protein-coding	0.135000	0.721393	
mm_21429.1	chr2	158320238	158320438	-	1	NA	NA	NA	13845	NM_008489	16803	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	0.020000	0.482587	
mm_135093.1	chr16	34958708	34958908	-	1	NA	NA	NA	56	NR_045722	278725	Mm.436927	NR_045722		E130310I04Rik	A930019C19Rik	RIKEN cDNA E130310I04 gene	ncRNA	0.030000	0.616915	31(AACCATAAAAGG,-,0.00)
mm_156083.1	chrX	109445324	109445524	+	1	NA	NA	NA	248668	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.000000	0.407960	
mm_3838.1	chr1	160044379	160044579	+	1	NA	NA	NA	99	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.050000	0.621891	
mm_166392.1	chr5	134938353	134938553	+	1	NA	NA	NA	6080	NM_001347490	79565	Mm.34235	NM_024479	ENSMUSG00000040557	Wbscr27	AW492986|BC002286	Williams Beuren syndrome chromosome region 27 (human)	protein-coding	0.000000	0.477612	
mm_112185.1	chr12	113422415	113422615	-	1	NA	NA	NA	-67050	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.502488	
mm_164959.1	chr19	5798928	5799128	-	1	NA	NA	NA	-3047	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.020000	0.388060	
mm_49930.1	chr6	39420485	39420685	+	1	NA	NA	NA	-216	NM_018810	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.040000	0.597015	-61(CGCCCTAAAGGG,-,0.00),-59(CCCTAAAGGGGC,+,0.00)
mm_44316.1	chr5	9300042	9300242	-	1	NA	NA	NA	33949	NM_172706	231014	Mm.130063	NM_172706	ENSMUSG00000056004	9330182L06Rik	Eig121l	RIKEN cDNA 9330182L06 gene	protein-coding	0.020000	0.457711	
mm_8636.1	chr1	156421014	156421214	-	1	NA	NA	NA	-199	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.060000	0.532338	
mm_4372.1	chr1	172121670	172121870	+	1	NA	NA	NA	-4985	NM_001159525	19298	Mm.247764	NM_023041	ENSMUSG00000003464	Pex19	Pxf	peroxisomal biogenesis factor 19	protein-coding	0.020000	0.487562	
mm_144907.1	chr18	37403956	37404156	+	1	NA	NA	NA	3201	NM_053134	93880	Mm.286019	NM_053134	ENSMUSG00000051242	Pcdhb9	Pcdhb4C|PcdhbI	protocadherin beta 9	protein-coding	0.010000	0.373134	85(CTTTTTAAAATC,+,0.00)
mm_106756.1	chr12	4225626	4225826	+	1	NA	NA	NA	-8301	NM_001204912	69709	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.030000	0.487562	
mm_38640.1	chr4	143162016	143162216	-	1	NA	NA	NA	-25954	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	0.095000	0.661692	
mm_1037.1	chr1	58756715	58756915	+	1	NA	NA	NA	26263	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.010000	0.447761	
mm_76961.1	chr8	106134838	106135038	-	1	NA	NA	NA	-462	NR_040345	69771	Mm.393274	NR_040344		1810019D21Rik	-	RIKEN cDNA 1810019D21 gene	ncRNA	0.015000	0.611940	
mm_32428.1	chr4	107178342	107178542	+	1	NA	NA	NA	-76	NM_025617	66526	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0.080000	0.671642	
mm_68870.1	chr7	126446485	126446685	-	1	NA	NA	NA	16488	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.030000	0.611940	
mm_87629.1	chr10	58323389	58323589	+	1	NA	NA	NA	23	NM_026148	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.120000	0.711443	
mm_126511.1	chr15	81802700	81802900	+	1	NA	NA	NA	127	NM_153484	21685	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.010000	0.597015	
mm_53769.1	chr6	145865584	145865784	+	1	NA	NA	NA	-264	NM_024469	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.115000	0.766169	
mm_126822.1	chr15	88819606	88819806	+	1	NA	NA	NA	60	NM_029720	76737	Mm.292567	NM_029720	ENSMUSG00000023272	Creld2	5730592L21Rik|C85758	cysteine-rich with EGF-like domains 2	protein-coding	0.135000	0.746269	
mm_41304.1	chr5	90467265	90467465	+	1	NA	NA	NA	6495	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.417910	-30(CCTTTTCAGGGC,+,0.00)
mm_36985.1	chr4	109666532	109666732	-	1	NA	NA	NA	124	NM_001301368	12580	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	protein-coding	0.045000	0.457711	
mm_171829.1	chr5	145271885	145272085	-	1	NA	NA	NA	-11358	NM_001081431	666311	Mm.260773	NM_001081431	ENSMUSG00000070420	Zscan25	EG666311|Zfp498	zinc finger and SCAN domain containing 25	protein-coding	0.030000	0.492537	-32(GCCTATATAAGC,-,0.00)
mm_98377.1	chr11	94044237	94044437	+	1	NA	NA	NA	132	NM_001025429	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.025000	0.522388	
mm_81477.1	chr9	109931805	109932005	+	1	NA	NA	NA	131	NM_008633	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.095000	0.721393	
mm_128823.1	chr15	67128896	67129096	-	1	NA	NA	NA	47886	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.000000	0.577114	
mm_72748.1	chr8	85095242	85095442	+	1	NA	NA	NA	12073	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.045000	0.567164	
mm_78530.1	chr9	35054136	35054336	+	1	NA	NA	NA	-62492	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.010000	0.462687	
mm_9574.1	chr1	173979929	173980129	-	1	NA	NA	NA	2815	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.005000	0.378109	
mm_26813.1	chr3	10254104	10254304	-	1	NA	NA	NA	-45628	NM_024406	11770	Mm.582	NM_024406	ENSMUSG00000062515	Fabp4	422/aP2|ALBP/Ap2|Ap2|Lbpl	fatty acid binding protein 4, adipocyte	protein-coding	0.005000	0.437811	
mm_74181.1	chr8	123477840	123478040	+	1	NA	NA	NA	78	NR_028260	114896	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	0.110000	0.726368	
mm_110561.1	chr12	55783218	55783418	-	1	NA	NA	NA	38198	NM_019994	56784	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0.000000	0.328358	
mm_132491.1	chr16	36934493	36934693	+	1	NA	NA	NA	-390	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.000000	0.398010	
mm_28121.1	chr3	86920304	86920504	-	1	NA	NA	NA	480	NM_001195496	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.125000	0.736318	
mm_29404.1	chr3	108906882	108907082	-	1	NA	NA	NA	4722	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.000000	0.323383	
mm_169311.1	chr14	104715855	104716055	-	1	NA	NA	NA	76808	NR_015593	320249	Mm.320725	NR_015593		D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0.085000	0.522388	45(AACTTTAAATGG,-,0.00)
mm_135274.1	chr16	38407587	38407787	-	1	NA	NA	NA	25458	NM_134102	85031	Mm.279805	NM_134102	ENSMUSG00000002847	Pla1a	AA986889|Ps-pla1|Pspla1	phospholipase A1 member A	protein-coding	0.010000	0.512438	
mm_94452.1	chr11	6389348	6389548	+	1	NA	NA	NA	-5677	NM_001005867	52915	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.200000	0.850746	
mm_48033.1	chr5	136266621	136266821	-	1	NA	NA	NA	-21781	NM_018825	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.005000	0.323383	
mm_69217.1	chr7	127585090	127585290	-	1	NA	NA	NA	3405	NM_001033040	233899	Mm.25220	NM_001033040	ENSMUSG00000057176	Ccdc189	Gm166	coiled-coil domain containing 189	protein-coding	0.025000	0.527363	-50(CTCTTTAAAGAG,+,0.00),-50(CTCTTTAAAGAG,-,0.00)
mm_39025.1	chr4	152131780	152131980	-	1	NA	NA	NA	-2955	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.080000	0.671642	
mm_107083.1	chr12	17274357	17274557	+	1	NA	NA	NA	7862	NM_027959	71853	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	0.015000	0.472637	
mm_62868.1	chr7	114722367	114722567	+	1	NA	NA	NA	3824	NM_054084	116903	Mm.273838	NM_054084	ENSMUSG00000030666	Calcb	CGRP2|Calc2	calcitonin-related polypeptide, beta	protein-coding	0.005000	0.502488	
mm_74435.1	chr8	3754383	3754583	-	1	NA	NA	NA	-5499	NM_133238	170786	Mm.32510	NM_133238	ENSMUSG00000031494	Cd209a	CD209|CDSIGN|CIRE|DC-SIGN|DC-SIGN1|Dcsign|SIGN-R1|SIGNR5	CD209a antigen	protein-coding	0.055000	0.542289	
mm_117282.1	chr13	65278631	65278831	-	1	NA	NA	NA	-123	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.080000	0.597015	
mm_41222.1	chr5	88584088	88584288	+	1	NA	NA	NA	675	NM_027530	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.030000	0.542289	
mm_157643.1	chrX	57304763	57304963	-	1	NA	NA	NA	33866	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	0.005000	0.497512	
mm_38717.1	chr4	145234654	145234854	-	1	NA	NA	NA	12116	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.000000	0.432836	
mm_167738.1	chr9	106561551	106561751	-	1	NA	NA	NA	-26	NM_026645	68265	Mm.141451	NM_026645	ENSMUSG00000023577	Iqcf3	1700012F17Rik|AV040440	IQ motif containing F3	protein-coding	0.020000	0.542289	
mm_54735.1	chr6	40940839	40941039	-	1	NA	NA	NA	-382	NM_028550	73481	Mm.333010	NM_028550	ENSMUSG00000029883	1700074P13Rik	AV047902|Tryx5	RIKEN cDNA 1700074P13 gene	protein-coding	0.025000	0.487562	
mm_163638.1	chr13	60602466	60602666	-	1	NA	NA	NA	355	NM_134062	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.090000	0.631841	
mm_28274.1	chr3	88913706	88913906	-	1	NA	NA	NA	144	NM_144898	229524	Mm.440405	NM_144898	ENSMUSG00000068922	Msto1	BC008103|mst	misato 1, mitochondrial distribution and morphology regulator	protein-coding	0.085000	0.701493	
mm_122534.1	chr14	47385592	47385792	-	1	NA	NA	NA	11832	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.035000	0.507463	
mm_110609.1	chr12	56536704	56536904	-	1	NA	NA	NA	104	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.045000	0.606965	
mm_74370.1	chr8	128487258	128487458	+	1	NA	NA	NA	128117	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.000000	0.348259	
mm_36037.1	chr4	57240949	57241149	-	1	NA	NA	NA	60788	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.030000	0.547264	-34(TTATTTAAAAGC,-,0.00)
mm_22953.1	chr3	32397026	32397226	+	1	NA	NA	NA	-31461	NM_009517	22401	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0.065000	0.597015	
mm_107805.1	chr12	65021727	65021927	+	1	NA	NA	NA	-14507	NM_177806	328110	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	0.000000	0.293532	
mm_123862.1	chr14	72539060	72539260	-	1	NA	NA	NA	170843	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.005000	0.442786	
mm_123139.1	chr14	56620462	56620662	-	1	NA	NA	NA	44943	NM_001145978	328417	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	0.030000	0.497512	
mm_58290.1	chr6	145863726	145863926	-	1	NA	NA	NA	1594	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.075000	0.611940	
mm_125311.1	chr15	38078969	38079169	+	1	NA	NA	NA	-215	NM_001081359	70790	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.120000	0.661692	
mm_69636.1	chr7	138397535	138397735	-	1	NA	NA	NA	95	NM_183289	70571	Mm.334297	NM_183289	ENSMUSG00000091002	Tcerg1l	5730476P14Rik	transcription elongation regulator 1-like	protein-coding	0.150000	0.800995	
mm_58559.1	chr7	4741703	4741903	+	1	NA	NA	NA	1676	NM_001115018	232811	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	0.030000	0.542289	54(GGTTTTTAAAGC,-,0.00),55(GTTTTTAAAGCA,+,0.00)
mm_46560.1	chr5	106879813	106880013	-	1	NA	NA	NA	45977	NM_177873	330149	Mm.121664	NM_177873	ENSMUSG00000043410	Hfm1	A330009G12Rik|Gm1046|Mer3|Sec63d1	HFM1, ATP-dependent DNA helicase homolog	protein-coding	0.005000	0.368159	
mm_51852.1	chr6	90428443	90428643	+	1	NA	NA	NA	-63	NM_173775	243538	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	0.080000	0.621891	
mm_64915.1	chr7	16239685	16239885	-	1	NA	NA	NA	2546	NM_001146005	319430	Mm.239570	NM_176912	ENSMUSG00000074361	C5ar2	C5L2|E030029A11Rik|Gpr77	complement component 5a receptor 2	protein-coding	0.030000	0.601990	
mm_113485.1	chr13	37345369	37345569	+	1	NA	NA	NA	124	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.035000	0.577114	
mm_99878.1	chr11	109425846	109426046	+	1	NA	NA	NA	0	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.090000	0.671642	
mm_16916.1	chr2	13558409	13558609	-	1	NA	NA	NA	-13845	NM_010067	13434	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0.010000	0.378109	
mm_85767.1	chr9	108937076	108937276	-	1	NA	NA	NA	528	NM_025407	22273	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	0.055000	0.611940	
mm_91637.1	chr10	42270831	42271031	-	1	NA	NA	NA	5811	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.015000	0.447761	85(CCTTTTAGACTT,+,0.00)
mm_69551.1	chr7	135697844	135698044	-	1	NA	NA	NA	18435	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.005000	0.477612	
mm_11149.1	chr2	28517383	28517583	+	1	NA	NA	NA	4316	NM_001145834	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.010000	0.547264	
mm_65781.1	chr7	28767015	28767215	-	1	NA	NA	NA	363	NM_001122766	64383	Mm.272443	NM_022432	ENSMUSG00000015149	Sirt2	5730427M03Rik|SIR2L2|Sir2l	sirtuin 2	protein-coding	0.035000	0.477612	
mm_23283.1	chr3	51682519	51682719	+	1	NA	NA	NA	21440	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.010000	0.398010	
mm_32564.1	chr4	109676577	109676777	+	1	NA	NA	NA	50	NM_007983	14084	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	0.135000	0.761194	
mm_125427.1	chr15	43477142	43477342	+	1	NA	NA	NA	13	NM_025736	66736	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	0.080000	0.562189	
mm_139146.1	chr17	47527698	47527898	+	1	NA	NA	NA	22747	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.020000	0.587065	
mm_114206.1	chr13	56104841	56105041	+	1	NA	NA	NA	30609	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.015000	0.532338	
mm_141250.1	chr17	27556408	27556608	-	1	NA	NA	NA	-66	NM_001166536	15361	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0.155000	0.756219	-33(GGATTTAAAAGG,-,0.00)
mm_14206.1	chr2	127247959	127248159	+	1	NA	NA	NA	84	NM_175145	69470	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	0.075000	0.656716	
mm_115156.1	chr13	107034195	107034395	+	1	NA	NA	NA	11725	NR_015471	100040322	Mm.133867	NR_015471		3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.005000	0.462687	
mm_104876.1	chr11	99432193	99432393	-	1	NA	NA	NA	5860	NM_023256	66809	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	0.015000	0.492537	
mm_109709.1	chr12	113422436	113422636	+	1	NA	NA	NA	-67029	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.502488	
mm_47151.1	chr5	120588566	120588766	-	1	NA	NA	NA	-53	NM_145853	252972	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.090000	0.671642	
mm_49343.1	chr6	21949925	21950125	+	1	NA	NA	NA	410	NM_023626	71777	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0.120000	0.656716	
mm_86512.1	chr10	7663308	7663508	+	1	NA	NA	NA	37	NR_030698	320642	Mm.398806	NR_030698		A630066F11Rik	-	RIKEN cDNA A630066F11 gene	ncRNA	0.130000	0.736318	
mm_163393.1	chr12	64474819	64475019	-	1	NA	NA	NA	-21	NM_001163271	623046	Mm.189552	NM_001163271	ENSMUSG00000043060	Fscb	EG623046	fibrous sheath CABYR binding protein	protein-coding	0.000000	0.373134	
mm_108232.1	chr12	77239018	77239218	+	1	NA	NA	NA	379	NR_045554	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.115000	0.701493	
mm_154518.1	chrM	12816	13016	-	1	NA	NA	NA	NA	NA									0.025000	0.407960	
mm_79394.1	chr9	54863755	54863955	+	1	NA	NA	NA	100	NM_022655	64602	Mm.208991	NM_022655	ENSMUSG00000032293	Ireb2	D9Ertd85e|Irp2	iron responsive element binding protein 2	protein-coding	0.075000	0.681592	
mm_24374.1	chr3	90220774	90220974	+	1	NA	NA	NA	90	NM_026677	68328	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	0.060000	0.646766	
mm_38796.1	chr4	148149590	148149790	-	1	NA	NA	NA	2235	NM_001163705	50762	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	0.025000	0.577114	
mm_158610.1	chrX	152643755	152643955	-	1	NA	NA	NA	294	NM_001290687	110380	Mm.40796	NM_172441	ENSMUSG00000045180	Shroom2	4832440C16|Apxl|C630003H05Rik|Shrm2	shroom family member 2	protein-coding	0.015000	0.507463	
mm_140963.1	chr17	24647711	24647911	-	1	NA	NA	NA	2494	NM_023055	65962	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0.020000	0.646766	
mm_65201.1	chr7	19696829	19697029	-	1	NA	NA	NA	1469	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.095000	0.661692	
mm_4939.1	chr1	191182287	191182487	+	1	NA	NA	NA	946	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.055000	0.567164	
mm_126953.1	chr15	92161321	92161521	+	1	NA	NA	NA	64	NM_001159647	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.015000	0.472637	
mm_121897.1	chr14	21845418	21845618	-	1	NA	NA	NA	-2060	NM_176925	319486	Mm.390671	NM_176925	ENSMUSG00000090564	A430057M04Rik	-	RIKEN cDNA A430057M04 gene	protein-coding	0.020000	0.368159	
mm_151261.1	chr19	54020284	54020484	+	1	NA	NA	NA	-24798	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	0.010000	0.268657	
mm_637.1	chr1	40381369	40381569	+	1	NA	NA	NA	-48101	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.015000	0.467662	
mm_153341.1	chr19	38789006	38789206	-	1	NA	NA	NA	30131	NM_021315	57753	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	0.005000	0.288557	
mm_37984.1	chr4	133622428	133622628	-	1	NA	NA	NA	10901	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.025000	0.532338	
mm_123621.1	chr14	68120971	68121171	-	1	NA	NA	NA	-2681	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.025000	0.547264	
mm_78916.1	chr9	44999353	44999553	+	1	NA	NA	NA	10137	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.015000	0.562189	
mm_170027.1	chr17	21679887	21680087	+	1	NA	NA	NA	-10225	NR_045766	100310809	Mm.293030	NR_045766		Gm10509	ENSMUSG00000073448	zinc finger protein 51 pseudogene	pseudo	0.025000	0.552239	
mm_55845.1	chr6	83325869	83326069	-	1	NA	NA	NA	-70	NM_145571	232157	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	0.075000	0.616915	
mm_78728.1	chr9	41580886	41581086	+	1	NA	NA	NA	-267	NR_015483	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.020000	0.512438	
mm_101706.1	chr11	42000377	42000577	-	1	NA	NA	NA	237	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding	0.020000	0.462687	
mm_149079.1	chr19	8888850	8889050	+	1	NA	NA	NA	67	NR_104416	66276	Mm.27503	NM_025463	ENSMUSG00000071653	1810009A15Rik	-	RIKEN cDNA 1810009A15 gene	protein-coding	0.070000	0.567164	
mm_28067.1	chr3	84270609	84270809	-	1	NA	NA	NA	74	NM_001271725	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.015000	0.522388	
mm_82112.1	chr9	123150881	123151081	+	1	NA	NA	NA	35	NM_011606	21922	Mm.34588	NM_011606	ENSMUSG00000025784	Clec3b	Tna	C-type lectin domain family 3, member b	protein-coding	0.005000	0.512438	
mm_9494.1	chr1	173729537	173729737	-	1	NA	NA	NA	12172	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.010000	0.487562	
mm_131939.1	chr16	23986376	23986576	+	1	NA	NA	NA	2136	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.010000	0.472637	
mm_14409.1	chr2	130277099	130277299	+	1	NA	NA	NA	-827	NR_028528	100217428		NR_028528	ENSMUSG00000065272	Snord57	MBII-434	small nucleolar RNA, C/D box 57	snoRNA	0.005000	0.557214	-88(GGGCTGAAAAGG,-,0.00)
mm_74144.1	chr8	123280526	123280726	+	1	NA	NA	NA	-26404	NM_028200	72325	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	0.015000	0.527363	69(ATCCATAAAGGG,-,0.00)
mm_111287.1	chr12	85429985	85430185	-	1	NA	NA	NA	-43816	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.015000	0.487562	
mm_110531.1	chr12	54999031	54999231	-	1	NA	NA	NA	-12795	NM_013815	217578	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.035000	0.587065	
mm_38246.1	chr4	136602527	136602727	-	1	NA	NA	NA	96	NM_133872	99982	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	0.175000	0.791045	
mm_62199.1	chr7	97788504	97788704	+	1	NA	NA	NA	-50357	NM_175105	66333	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.120000	0.716418	
mm_160921.1	chr11	84880016	84880216	+	1	NA	NA	NA	79	NM_027388	70325	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	0.110000	0.721393	
mm_130892.1	chr15	102366226	102366426	-	1	NA	NA	NA	-55	NM_130458	170574	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	0.020000	0.597015	
mm_150612.1	chr19	40894614	40894814	+	1	NA	NA	NA	9	NM_028319	72672	Mm.313523	NM_028319	ENSMUSG00000049164	Zfp518a	2810401C22Rik|6330417C12Rik|AI426493|Zfp518|Znf518|Znf518a|mKIAA0335	zinc finger protein 518A	protein-coding	0.120000	0.726368	
mm_155788.1	chrX	96713414	96713614	+	1	NA	NA	NA	46	NM_029536	76206	Mm.256065	NM_029536	ENSMUSG00000031210	Gpr165	6530406P05Rik	G protein-coupled receptor 165	protein-coding	0.030000	0.577114	-79(TTCTATAAAGGG,-,0.00)
mm_48072.1	chr5	136581683	136581883	-	1	NA	NA	NA	-14293	NM_001291238	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.025000	0.492537	
mm_48607.1	chr5	144255883	144256083	-	1	NA	NA	NA	758	NM_018772	55950	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.060000	0.681592	
mm_134354.1	chr16	16717997	16718197	-	1	NA	NA	NA	24	NR_045920	74066	Mm.61161	NM_028739		4933404G15Rik	4933401J20Rik	RIKEN cDNA 4933404G15 gene	ncRNA	0.000000	0.417910	
mm_158851.1	chrX	169993978	169994178	-	1	NA	NA	NA	-15161	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.100000	0.706468	
mm_150448.1	chr19	38096774	38096974	+	1	NA	NA	NA	-205	NM_181748	107221	Mm.35288	NM_181748	ENSMUSG00000054200	Ffar4	AI552415|GT01|Gpr120|Gpr129|KPG_013|O3far1|Pgr4	free fatty acid receptor 4	protein-coding	0.050000	0.651741	
mm_171209.1	chr3	5860344	5860544	+	1	NA	NA	NA	-284196	NM_001163305	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.070000	0.497512	
mm_116471.1	chr13	43481082	43481282	-	1	NA	NA	NA	-209	NM_019930	56705	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.165000	0.771144	
mm_45909.1	chr5	89418951	89419151	-	1	NA	NA	NA	38847	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.000000	0.348259	
mm_59499.1	chr7	27540998	27541198	+	1	NA	NA	NA	12120	NM_011116	18807	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.015000	0.636816	
mm_92879.1	chr10	82623124	82623324	-	1	NA	NA	NA	4	NM_001135569	544717	Mm.334867	NM_001135567	ENSMUSG00000063320	1190007I07Rik	-	RIKEN cDNA 1190007I07 gene	protein-coding	0.080000	0.626866	
mm_119373.1	chr14	41122722	41122922	+	1	NA	NA	NA	-8966	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.000000	0.437811	
mm_91655.1	chr10	42583534	42583734	-	1	NA	NA	NA	-46	NM_152229	21907	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	0.080000	0.646766	
mm_27737.1	chr3	69073468	69073668	-	1	NA	NA	NA	-28826	NM_025863	66949	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.025000	0.507463	
mm_158032.1	chrX	97377075	97377275	-	1	NA	NA	NA	34	NM_001161432	245527	Mm.189270	NM_175540	ENSMUSG00000034457	Eda2r	9430060M22Rik|TNFRSF27|Xedar	ectodysplasin A2 receptor	protein-coding	0.025000	0.497512	
mm_70377.1	chr8	10006697	10006897	+	1	NA	NA	NA	164	NM_033622	24099	Mm.28835	NM_033622	ENSMUSG00000031497	Tnfsf13b	BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4	tumor necrosis factor (ligand) superfamily, member 13b	protein-coding	0.020000	0.567164	
mm_148628.1	chr19	5450158	5450358	+	1	NA	NA	NA	2560	NM_010235	14283	Mm.6215	NM_010235	ENSMUSG00000024912	Fosl1	AW538199|Fra1|fra-1	fos-like antigen 1	protein-coding	0.040000	0.631841	
mm_146514.1	chr18	3337590	3337790	-	1	NA	NA	NA	-101	NM_001110852	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.060000	0.601990	
mm_11118.1	chr2	28205560	28205760	+	1	NA	NA	NA	-29	NM_001038612	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.155000	0.786070	
mm_167492.1	chr9	7558143	7558343	-	1	NA	NA	NA	-186	NM_008611	17394	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	0.025000	0.472637	
mm_23341.1	chr3	54692945	54693145	+	1	NA	NA	NA	-60	NM_019995	56790	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0.095000	0.597015	
mm_91195.1	chr10	21150296	21150496	-	1	NA	NA	NA	10588	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.035000	0.547264	
mm_4365.1	chr1	172082426	172082626	+	1	NA	NA	NA	-3	NM_009938	12847	Mm.30041	NM_009938	ENSMUSG00000026553	Copa	AU040324|xenin	coatomer protein complex subunit alpha	protein-coding	0.045000	0.567164	35(TCCTCTTAAAGA,-,0.00),36(CCTCTTAAAGAC,+,0.00)
mm_8629.1	chr1	156303275	156303475	-	1	NA	NA	NA	-27	NM_001134741	214575	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	0.180000	0.776119	
mm_54472.1	chr6	34910470	34910670	-	1	NA	NA	NA	261	NM_001013366	101240	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.070000	0.666667	
mm_160645.1	chr9	109978859	109979059	+	1	NA	NA	NA	47185	NM_008633	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.030000	0.492537	
mm_134909.1	chr16	30260683	30260883	-	1	NA	NA	NA	6749	NM_027904	71756	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.055000	0.631841	
mm_148551.1	chr19	4711868	4712068	+	1	NA	NA	NA	745	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	0.100000	0.736318	
mm_14427.1	chr2	130539334	130539534	+	1	NA	NA	NA	24315	NR_040348	321014	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	0.010000	0.492537	
mm_98336.1	chr11	90804591	90804791	+	1	NA	NA	NA	0	NR_045956	73922	Mm.233289	NR_045956	ENSMUSG00000085940	4930405D11Rik	-	RIKEN cDNA 4930405D11 gene	ncRNA	0.015000	0.497512	-34(GCCTATAAAAAC,-,0.00)
mm_93193.1	chr10	94035703	94035903	-	1	NA	NA	NA	-4	NM_001304575	215008	Mm.124177	NM_172538	ENSMUSG00000036099	Vezt	A630071D13Rik|AI848282	vezatin, adherens junctions transmembrane protein	protein-coding	0.075000	0.651741	
mm_104778.1	chr11	98545969	98546169	-	1	NA	NA	NA	-38	NM_011771	22780	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.080000	0.577114	
mm_147348.1	chr18	43324256	43324456	-	1	NA	NA	NA	48916	NM_001136086	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.020000	0.472637	
mm_148670.1	chr19	5637438	5637638	+	1	NA	NA	NA	48	NM_009045	19697	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.155000	0.746269	-90(TCCCCTAAAAAC,-,0.00)
mm_99843.1	chr11	109359499	109359699	+	1	NA	NA	NA	-3195	NM_010303	14674	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0.015000	0.452736	
mm_103382.1	chr11	75415034	75415234	-	1	NA	NA	NA	7489	NM_011340	20317	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.020000	0.532338	
mm_154089.1	chr19	56815691	56815891	-	1	NA	NA	NA	-2108	NM_170757	213993	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0.025000	0.447761	
mm_78454.1	chr9	32372317	32372517	+	1	NA	NA	NA	-1	NM_019659	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.020000	0.457711	-66(TCATTTAAGGCC,+,0.00)
mm_24709.1	chr3	95217351	95217551	+	1	NA	NA	NA	-6	NR_108026	100504029	Mm.478537	NR_108026	ENSMUSG00000097167	Gm16740	-	predicted gene, 16740	ncRNA	0.050000	0.711443	
mm_125181.1	chr15	31604713	31604913	+	1	NA	NA	NA	2697	NM_026546	68073	Mm.119185	NM_026546	ENSMUSG00000039065	Fam173b	A930016P21Rik|AA987072	family with sequence similarity 173, member B	protein-coding	0.000000	0.432836	
mm_7031.1	chr1	87099430	87099630	-	1	NA	NA	NA	2076	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.035000	0.562189	
mm_18385.1	chr2	60113693	60113893	-	1	NA	NA	NA	11947	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.000000	0.432836	
mm_102296.1	chr11	55419810	55420010	-	1	NA	NA	NA	170	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.020000	0.636816	
mm_122761.1	chr14	54233156	54233356	-	1	NA	NA	NA	20673	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.462687	
mm_144707.1	chr18	34864560	34864760	+	1	NA	NA	NA	3453	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.020000	0.407960	
mm_118984.1	chr14	28504485	28504685	+	1	NA	NA	NA	-888	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.025000	0.472637	-92(GCTTTAAAATCC,+,0.00)
mm_26408.1	chr3	142608093	142608293	+	1	NA	NA	NA	-12470	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.005000	0.467662	
mm_36527.1	chr4	86558187	86558387	-	1	NA	NA	NA	16	NM_001081096	75811	Mm.56451	NM_001081096	ENSMUSG00000028492	Saxo1	4930500O09Rik|Fam154a	stabilizer of axonemal microtubules 1	protein-coding	0.015000	0.597015	
mm_29927.1	chr3	131491182	131491382	-	1	NA	NA	NA	-73486	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.020000	0.427861	
mm_158111.1	chrX	102156981	102157181	-	1	NA	NA	NA	10	NM_146235	236930	Mm.31911	NM_146235	ENSMUSG00000051220	Ercc6l	BC004701|D330021P09Rik	excision repair cross-complementing rodent repair deficiency complementation group 6 like	protein-coding	0.100000	0.656716	
mm_75122.1	chr8	34806978	34807178	-	1	NA	NA	NA	-532	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.105000	0.656716	
mm_32497.1	chr4	108431279	108431479	+	1	NA	NA	NA	-24666	NM_024198	67305	Mm.20164	NM_024198	ENSMUSG00000028597	Gpx7	3110050F08Rik|AI327032|GPX6	glutathione peroxidase 7	protein-coding	0.005000	0.537313	81(TTGTTTTAAAGC,-,0.00)
mm_9662.1	chr1	177796515	177796715	-	1	NA	NA	NA	-106	NM_007422	11566	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.135000	0.796020	
mm_109667.1	chr12	113050407	113050607	+	1	NA	NA	NA	-23995	NM_029381	75671	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0.015000	0.517413	
mm_170985.1	chr2	73867839	73868039	+	1	NA	NA	NA	24700	NM_001284371	11909	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0.075000	0.527363	
mm_9469.1	chr1	173333412	173333612	-	1	NA	NA	NA	-9	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	0.005000	0.517413	
mm_527.1	chr1	37660695	37660895	+	1	NA	NA	NA	59016	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.020000	0.457711	
mm_15342.1	chr2	156008013	156008213	+	1	NA	NA	NA	-12	NM_025516	66366	Mm.141276	NM_025516	ENSMUSG00000005881	Ergic3	2310015B14Rik|AV318804|CGI-54|D2Ucla1|NY-BR-84|Sdbcag84	ERGIC and golgi 3	protein-coding	0.080000	0.691542	
mm_32909.1	chr4	119132084	119132284	+	1	NA	NA	NA	23439	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.035000	0.547264	
mm_129883.1	chr15	83483930	83484130	-	1	NA	NA	NA	-19424	NM_001159509	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.030000	0.502488	
mm_111628.1	chr12	102438995	102439195	-	1	NA	NA	NA	718	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.010000	0.412935	
mm_28558.1	chr3	93443774	93443974	-	1	NA	NA	NA	1544	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.055000	0.577114	
mm_123075.1	chr14	55721813	55722013	-	1	NA	NA	NA	263	NM_019519	56187	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0.055000	0.626866	
mm_45542.1	chr5	72846350	72846550	-	1	NA	NA	NA	21998	NM_001113461	21682	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.020000	0.532338	
mm_50556.1	chr6	49047681	49047881	+	1	NA	NA	NA	11263	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.025000	0.472637	
mm_173123.1	chrX	165466142	165466342	+	1	NA	NA	NA	-139261	NM_183427	237213	Mm.113877	NM_183427	ENSMUSG00000018589	Glra2	-	glycine receptor, alpha 2 subunit	protein-coding	0.025000	0.472637	
mm_72761.1	chr8	85509093	85509293	+	1	NA	NA	NA	16576	NM_173866	108682	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.020000	0.472637	
mm_1497.1	chr1	72074290	72074490	+	1	NA	NA	NA	-69195	NR_040454	71134	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.015000	0.492537	
mm_144528.1	chr18	25065746	25065946	+	1	NA	NA	NA	100119	NM_001142697	66648	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.010000	0.487562	
mm_26952.1	chr3	20275567	20275767	-	1	NA	NA	NA	66	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.005000	0.457711	-34(GGCTATAAAAGC,-,0.00)
mm_166876.1	chr7	25412849	25413049	-	1	NA	NA	NA	-63	NM_153576	232983	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0.010000	0.467662	
mm_148075.1	chr18	72350916	72351116	-	1	NA	NA	NA	53	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.060000	0.597015	
mm_157842.1	chrX	74373142	74373342	-	1	NA	NA	NA	107	NM_001256104	214601	Mm.19931	NM_145406	ENSMUSG00000032806	Slc10a3	DXHXS253E|DXS253Eh|DXSmhG28|P3	solute carrier family 10 (sodium/bile acid cotransporter family), member 3	protein-coding	0.085000	0.671642	
mm_39110.1	chr4	154928065	154928265	-	1	NA	NA	NA	-88	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.010000	0.507463	
mm_85599.1	chr9	107542033	107542233	-	1	NA	NA	NA	-76	NM_018879	56032	Mm.11337	NM_018879	ENSMUSG00000010057	Nprl2	2810446G01Rik|G21|NPR2L|Tusc4	nitrogen permease regulator-like 2	protein-coding	0.080000	0.636816	
mm_31384.1	chr4	47996367	47996567	+	1	NA	NA	NA	-48838	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.000000	0.412935	
mm_25359.1	chr3	107090856	107091056	+	1	NA	NA	NA	-10611	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.000000	0.452736	
mm_155043.1	chrX	42150597	42150797	+	1	NA	NA	NA	-4	NM_021465	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.030000	0.671642	
mm_49789.1	chr6	35185142	35185342	+	1	NA	NA	NA	7626	NM_027513	70699	Mm.261208	NM_027513	ENSMUSG00000038759	Nup205	3830404O05Rik|AV248391|mKIAA0225	nucleoporin 205	protein-coding	0.005000	0.407960	
mm_133296.1	chr16	77500121	77500321	+	1	NA	NA	NA	-98715	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.020000	0.457711	
mm_9828.1	chr1	182517490	182517690	-	1	NA	NA	NA	-107	NM_009794	12334	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.135000	0.781095	
mm_163948.1	chr14	51923046	51923246	-	1	NA	NA	NA	-373	NM_001011687	497071	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	0.005000	0.537313	
mm_75915.1	chr8	71463485	71463685	-	1	NA	NA	NA	72	NM_022419	64296	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	0.110000	0.726368	
mm_96105.1	chr11	60537932	60538132	+	1	NA	NA	NA	349	NM_172943	268420	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.155000	0.716418	47(GCTTTAAAGTGC,+,0.00)
mm_131172.1	chr16	7069691	7069891	+	1	NA	NA	NA	-44	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.030000	0.512438	
mm_114197.1	chr13	55905199	55905399	+	1	NA	NA	NA	-73874	NM_011097	18740	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.005000	0.492537	
mm_113165.1	chr13	24812617	24812817	+	1	NA	NA	NA	11060	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.005000	0.462687	
mm_70448.1	chr8	11758252	11758452	+	1	NA	NA	NA	22	NM_001113518	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.125000	0.721393	
mm_98108.1	chr11	86900148	86900348	+	1	NA	NA	NA	-92588	NM_026191	67487	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.015000	0.497512	
mm_99081.1	chr11	99389007	99389207	+	1	NA	NA	NA	257	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.025000	0.606965	
mm_82671.1	chr9	22130526	22130726	-	1	NA	NA	NA	-28	NM_007388	11433	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.015000	0.542289	
mm_53129.1	chr6	125145143	125145343	+	1	NA	NA	NA	19	NM_001302779	320678	Mm.129415	NM_178787	ENSMUSG00000038271	Iffo1	4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo	intermediate filament family orphan 1	protein-coding	0.035000	0.597015	
mm_52524.1	chr6	115601865	115602065	+	1	NA	NA	NA	27	NM_023290	67027	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	0.105000	0.776119	
mm_65575.1	chr7	27195621	27195821	-	1	NA	NA	NA	39	NM_001046637	53607	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0.065000	0.572139	
mm_77123.1	chr8	111310110	111310310	-	1	NA	NA	NA	-9988	NM_146218	234736	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	0.070000	0.587065	
mm_486.1	chr1	36764418	36764618	+	1	NA	NA	NA	3	NM_001289766	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.015000	0.577114	
mm_40566.1	chr5	62818495	62818695	+	1	NA	NA	NA	4772	NM_001170705	100322896	Mm.479821	NM_001170705	ENSMUSG00000090326	Dthd1	Gm17384	death domain containing 1	protein-coding	0.005000	0.422886	53(TCCTTTATAGTG,+,0.00)
mm_29292.1	chr3	107760142	107760342	-	1	NA	NA	NA	227	NM_001113530	12977	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0.085000	0.651741	-33(CCGCTTAAAAGG,-,0.00),-31(GCTTAAAAGGCT,+,0.00)
mm_53404.1	chr6	131782072	131782272	+	1	NA	NA	NA	-92109	NM_207019	387346	Mm.377908	NM_207019	ENSMUSG00000063478	Tas2r114	T2R14|Tas2r14|mGR14|mt2r46	taste receptor, type 2, member 114	protein-coding	0.005000	0.393035	
mm_22756.1	chr3	19985538	19985738	+	1	NA	NA	NA	28584	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.010000	0.388060	
mm_73473.1	chr8	106716297	106716497	+	1	NA	NA	NA	33329	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.010000	0.537313	
mm_103943.1	chr11	83850639	83850839	-	1	NA	NA	NA	-130	NM_001291268	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.035000	0.547264	
mm_3846.1	chr1	160054970	160055170	+	1	NA	NA	NA	10690	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.005000	0.437811	
mm_89063.1	chr10	82896824	82897024	+	1	NA	NA	NA	30298	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.010000	0.383085	
mm_110379.1	chr12	40209579	40209779	-	1	NA	NA	NA	-10364	NM_001033437	380755	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	0.005000	0.268657	-58(CCTTTAAGATGC,+,0.00)
mm_11499.1	chr2	32535186	32535386	+	1	NA	NA	NA	-73	NM_153560	98952	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.145000	0.726368	
mm_172700.1	chr8	63933220	63933420	-	1	NA	NA	NA	18850	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding	0.030000	0.592040	
mm_167586.1	chr9	46196988	46197188	+	1	NA	NA	NA	-31542	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.030000	0.472637	
mm_137985.1	chr17	33607955	33608155	+	1	NA	NA	NA	-21037	NR_034153	328801	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	0.030000	0.507463	-92(GACTTTTAAAAA,-,0.00)
mm_110425.1	chr12	46818832	46819032	-	1	NA	NA	NA	-157	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.045000	0.512438	
mm_100213.1	chr11	116918732	116918932	+	1	NA	NA	NA	-31	NM_172948	268510	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	0.160000	0.771144	
mm_1252.1	chr1	62816720	62816920	+	1	NA	NA	NA	-22088	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.005000	0.427861	7(CCTTATAGGGAT,+,0.00)
mm_57320.1	chr6	124732927	124733127	-	1	NA	NA	NA	127	NM_013545	15170	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.010000	0.592040	
mm_101927.1	chr11	50202782	50202982	-	1	NA	NA	NA	7938	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.015000	0.547264	
mm_168106.1	chr10	14745795	14745995	-	1	NA	NA	NA	-14394	NM_008703	18101	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.015000	0.492537	
mm_64603.1	chr7	3216896	3217096	-	1	NA	NA	NA	-1630	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.015000	0.368159	-35(CTTTAAATAGCT,+,0.00)
mm_130626.1	chr15	100415652	100415852	-	1	NA	NA	NA	7303	NM_001146161	18174	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0.030000	0.462687	
mm_137661.1	chr17	28691367	28691567	+	1	NA	NA	NA	125	NM_001168514	26416	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.140000	0.746269	
mm_23639.1	chr3	67092402	67092602	+	1	NA	NA	NA	106830	NM_025822	66880	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	0.000000	0.303483	
mm_143159.1	chr17	57224042	57224242	-	1	NA	NA	NA	3994	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.020000	0.552239	
mm_28644.1	chr3	95228115	95228315	-	1	NA	NA	NA	-209	NM_172395	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.055000	0.646766	
mm_44574.1	chr5	24842213	24842413	-	1	NA	NA	NA	48	NM_053075	19744	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.135000	0.701493	
mm_139942.1	chr17	71183487	71183687	+	1	NA	NA	NA	-391	NM_022882	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.175000	0.820896	
mm_153225.1	chr19	34879086	34879286	-	1	NA	NA	NA	269	NM_001114339	75735	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	0.075000	0.616915	-72(CCCTTTAGGCTC,+,0.00)
mm_27868.1	chr3	79159527	79159727	-	1	NA	NA	NA	-13752	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.005000	0.398010	
mm_153048.1	chr19	32068761	32068961	-	1	NA	NA	NA	34279	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.010000	0.417910	-91(CTACATATAAGG,-,0.00)
mm_78519.1	chr9	32962966	32963166	+	1	NA	NA	NA	-34100	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.010000	0.427861	
mm_123528.1	chr14	66803449	66803649	-	1	NA	NA	NA	65051	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.010000	0.343284	13(TTGTTTTAAAGG,-,0.00)
mm_11369.1	chr2	30995454	30995654	+	1	NA	NA	NA	13275	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.010000	0.512438	
mm_118971.1	chr14	27876066	27876266	+	1	NA	NA	NA	253759	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	0.035000	0.502488	
mm_165876.1	chr4	41124190	41124390	-	1	NA	NA	NA	49	NM_139236	230082	Mm.285797	NM_139236	ENSMUSG00000028430	Nol6	AA410091|Nrap	nucleolar protein family 6 (RNA-associated)	protein-coding	0.050000	0.611940	
mm_149006.1	chr19	8723396	8723596	+	1	NA	NA	NA	9	NR_002896	83673	Mm.292489	NR_002896	ENSMUSG00000108414	Snhg1	-	small nucleolar RNA host gene 1	ncRNA	0.045000	0.427861	-41(CTATTTATAGGC,+,0.00)
mm_15815.1	chr2	164507313	164507513	+	1	NA	NA	NA	9888	NM_133779	78928	Mm.28228	NM_133779	ENSMUSG00000017721	Pigt	2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7	phosphatidylinositol glycan anchor biosynthesis, class T	protein-coding	0.060000	0.601990	
mm_112177.1	chr12	113421562	113421762	-	1	NA	NA	NA	-67903	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.492537	
mm_146293.1	chr18	79958849	79959049	+	1	NA	NA	NA	-87946	NM_053117	93737	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0.040000	0.472637	
mm_52258.1	chr6	108064944	108065144	+	1	NA	NA	NA	-1	NM_001276356	74729	Mm.56539	NM_178391	ENSMUSG00000034639	Setmar	5830404F24Rik|Etet2	SET domain without mariner transposase fusion	protein-coding	0.040000	0.542289	
mm_12545.1	chr2	72390629	72390829	+	1	NA	NA	NA	-85490	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.020000	0.547264	-93(CTTTTTATAGAC,+,0.00)
mm_4424.1	chr1	172502486	172502686	+	1	NA	NA	NA	2340	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.015000	0.606965	
mm_71783.1	chr8	66697086	66697286	+	1	NA	NA	NA	-236	NM_010934	18166	Mm.5112	NM_010934	ENSMUSG00000036437	Npy1r	Npyr|Y1-R	neuropeptide Y receptor Y1	protein-coding	0.035000	0.477612	-29(GACTTTTAAAAC,-,0.00),-27(CTTTTAAAACAG,+,0.00)
mm_123465.1	chr14	65953661	65953861	-	1	NA	NA	NA	-17	NM_172604	219151	Mm.344095	NM_172604	ENSMUSG00000034463	Scara3	APC7|C130058N24Rik|CSR|CSR1|MSLR1|MSRL1	scavenger receptor class A, member 3	protein-coding	0.110000	0.706468	
mm_1062.1	chr1	58973610	58973810	+	1	NA	NA	NA	139	NM_172656	227154	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	0.105000	0.726368	
mm_25534.1	chr3	115384442	115384642	+	1	NA	NA	NA	303577	NM_153157	229759	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding	0.010000	0.452736	
mm_112846.1	chr13	20835864	20836064	+	1	NA	NA	NA	41851	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.373134	
mm_16613.1	chr2	5339771	5339971	-	1	NA	NA	NA	-39519	NR_030601	100124465		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.010000	0.502488	
mm_131123.1	chr16	5476244	5476444	+	1	NA	NA	NA	-220388	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.005000	0.492537	
mm_28967.1	chr3	101003672	101003872	-	1	NA	NA	NA	25723	NM_001167906	630146	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0.030000	0.611940	
mm_144895.1	chr18	36973708	36973908	+	1	NA	NA	NA	6	NM_001301259	103611159		NM_001301259		Gm38667	Pcdha7-g	predicted gene, 38667	protein-coding	0.025000	0.422886	
mm_263.1	chr1	20890506	20890706	+	1	NA	NA	NA	-16	NM_028829	74229	Mm.40780	NM_028829	ENSMUSG00000025931	Paqr8	1700019B16Rik|3110001D06Rik	progestin and adipoQ receptor family member VIII	protein-coding	0.100000	0.726368	
mm_37890.1	chr4	132533085	132533285	-	1	NA	NA	NA	2229	NM_007512	11983	Mm.2171	NM_007512	ENSMUSG00000054428	Atpif1	Atpi|IF(1)|If1	ATPase inhibitory factor 1	protein-coding	0.050000	0.597015	
mm_3465.1	chr1	150104272	150104472	+	1	NA	NA	NA	4341	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.025000	0.482587	
mm_35109.1	chr4	9651235	9651435	-	1	NA	NA	NA	-7618	NM_001177852	65973	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.005000	0.402985	
mm_96071.1	chr11	59810222	59810422	+	1	NA	NA	NA	242	NR_045686	100504104	Mm.391737	NR_045686	ENSMUSG00000087249	Gm16062	ENSMUSG00000072890|OTTMUSG00000029633	predicted gene 16062	ncRNA	0.040000	0.542289	
mm_13688.1	chr2	117120741	117120941	+	1	NA	NA	NA	-230	NM_001277256	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.095000	0.651741	
mm_167581.1	chr9	45944744	45944944	-	1	NA	NA	NA	-5254	NR_106055	102465659		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.015000	0.512438	
mm_143650.1	chr17	79451557	79451757	-	1	NA	NA	NA	26228	NR_033463	74622	Mm.311921	NR_033463		4930429F11Rik	-	RIKEN cDNA 4930429F11 gene	ncRNA	0.010000	0.477612	
mm_73045.1	chr8	94347313	94347513	+	1	NA	NA	NA	18205	NM_001205311	20497	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.000000	0.497512	
mm_20694.1	chr2	132793257	132793457	-	1	NA	NA	NA	12079	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.030000	0.547264	
mm_159682.1	chr5	5749252	5749452	-	1	NA	NA	NA	-35	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.145000	0.776119	
mm_146029.1	chr18	69521258	69521458	+	1	NA	NA	NA	175637	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.020000	0.477612	-18(GCATCTAAAAGA,-,0.00)
mm_12489.1	chr2	71745743	71745943	+	1	NA	NA	NA	26426	NR_037979	381371	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	0.000000	0.532338	
mm_27282.1	chr3	41494801	41495001	-	1	NA	NA	NA	-1702	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.005000	0.422886	-32(TCTTATATAACC,+,0.00),47(GCTTAAATGCTC,+,0.00)
mm_111556.1	chr12	101066312	101066512	-	1	NA	NA	NA	-16039	NR_038048	319760	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	0.000000	0.378109	
mm_1394.1	chr1	67129034	67129234	+	1	NA	NA	NA	6107	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.000000	0.318408	
mm_17582.1	chr2	30415435	30415635	-	1	NA	NA	NA	213	NM_007760	12908	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.115000	0.751244	
mm_45053.1	chr5	41799828	41800028	-	1	NA	NA	NA	-35708	NM_007524	12020	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0.010000	0.348259	
mm_37329.1	chr4	119539430	119539630	-	1	NA	NA	NA	-131	NM_001290696	230700	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	0.140000	0.726368	
mm_107281.1	chr12	29724326	29724526	+	1	NA	NA	NA	-37981	NR_046080	328075	Mm.447832	NR_046080		C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	0.005000	0.402985	
mm_95570.1	chr11	52396388	52396588	+	1	NA	NA	NA	60	NM_153117	213673	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.120000	0.701493	
mm_140773.1	chr17	17855103	17855303	-	1	NA	NA	NA	-15	NM_008215	15116	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase1	protein-coding	0.015000	0.562189	
mm_126636.1	chr15	83563502	83563702	+	1	NA	NA	NA	29	NM_009775	12257	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	0.090000	0.701493	
mm_35338.1	chr4	31970480	31970680	-	1	NA	NA	NA	6473	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.010000	0.537313	
mm_26317.1	chr3	142521223	142521423	+	1	NA	NA	NA	-9013	NM_001083312	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.010000	0.422886	
mm_85586.1	chr9	107307460	107307660	-	1	NA	NA	NA	10901	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.025000	0.552239	
mm_109065.1	chr12	104345172	104345372	+	1	NA	NA	NA	6786	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.010000	0.522388	
mm_148115.1	chr18	74957923	74958123	-	1	NA	NA	NA	3240	NM_010720	16891	Mm.299647	NM_010720	ENSMUSG00000053846	Lipg	3110013K01Rik|EL|lipase|mEDL	lipase, endothelial	protein-coding	0.010000	0.522388	
mm_7978.1	chr1	134099025	134099225	-	1	NA	NA	NA	-12117	NM_001284524	71884	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.010000	0.542289	
mm_88927.1	chr10	81256958	81257158	+	1	NA	NA	NA	-241	NM_001285854	17179	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0.010000	0.407960	
mm_86280.1	chr9	121839384	121839584	-	1	NA	NA	NA	-23	NM_028384	100502861	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	0.105000	0.671642	-72(ACCTTTAGAGGC,+,0.00)
mm_74528.1	chr8	9559163	9559363	-	1	NA	NA	NA	211760	NM_173446	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding	0.000000	0.487562	
mm_134475.1	chr16	18588678	18588878	-	1	NA	NA	NA	-1809	NM_001285476	21380	Mm.295194	NM_011532	ENSMUSG00000009097	Tbx1	-	T-box 1	protein-coding	0.080000	0.676617	
mm_43640.1	chr5	138255620	138255820	+	1	NA	NA	NA	238	NM_001081108	66096	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	0.060000	0.557214	
mm_149456.1	chr19	11516385	11516585	+	1	NA	NA	NA	-2074	NM_027209	69774	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	0.000000	0.527363	
mm_36706.1	chr4	97523605	97523805	-	1	NA	NA	NA	-58238	NM_001122952	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.040000	0.432836	
mm_44432.1	chr5	21008541	21008741	-	1	NA	NA	NA	47156	NM_011203	19248	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.000000	0.338308	-78(CACCTTTTAAGG,-,0.00),-76(CCTTTTAAGGAA,+,0.00)
mm_93049.1	chr10	88503863	88504063	-	1	NA	NA	NA	7	NR_027477	212862	Mm.288897	NM_144807	ENSMUSG00000060002	Chpt1	-	choline phosphotransferase 1	protein-coding	0.160000	0.850746	
mm_149998.1	chr19	29271443	29271643	+	1	NA	NA	NA	19740	NM_008413	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.020000	0.388060	
mm_49159.1	chr6	13413248	13413448	+	1	NA	NA	NA	11	NR_038149	69413	Mm.177847	NR_038149	ENSMUSG00000101894	1700016P04Rik	-	RIKEN cDNA 1700016P04 gene	ncRNA	0.015000	0.452736	
mm_46261.1	chr5	99728707	99728907	-	1	NA	NA	NA	253	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.080000	0.691542	
mm_25831.1	chr3	129199421	129199621	+	1	NA	NA	NA	-357	NM_001286942	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.040000	0.567164	
mm_19786.1	chr2	107057222	107057422	-	1	NA	NA	NA	2329	NM_008045	14308	Mm.249525	NM_008045	ENSMUSG00000027120	Fshb	FSH|FSH-B|FSH-beta|Fshbeta	follicle stimulating hormone beta	protein-coding	0.035000	0.537313	
mm_55744.1	chr6	77979391	77979591	-	1	NA	NA	NA	176	NM_145732	12386	Mm.34637	NM_009819	ENSMUSG00000063063	Ctnna2	AI481747|Catna|Catna2|cdf|chp	catenin (cadherin associated protein), alpha 2	protein-coding	0.075000	0.686567	
mm_120192.1	chr14	61598205	61598405	+	1	NA	NA	NA	79	NM_001164220	66597	Mm.491258	NM_023233	ENSMUSG00000035235	Trim13	3110001L12Rik|CAR|LEU5|RNF77|Rfp2	tripartite motif-containing 13	protein-coding	0.020000	0.487562	-57(GCCTTTATGGAA,+,0.00)
mm_161340.1	chr14	51717083	51717283	-	1	NA	NA	NA	-51	NM_001034102	545047	Mm.425915	NM_001034102	ENSMUSG00000068506	Gm5800	EG545047	predicted gene 5800	protein-coding	0.000000	0.477612	
mm_12854.1	chr2	83723991	83724191	+	1	NA	NA	NA	-306	NM_008402	16410	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.025000	0.502488	
mm_165664.1	chr3	88454783	88454983	-	1	NA	NA	NA	878	NM_013658	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.000000	0.577114	
mm_138306.1	chr17	34644689	34644889	+	1	NA	NA	NA	-94	NM_019873	56299	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0.050000	0.557214	
mm_163315.1	chr12	6595747	6595947	+	1	NA	NA	NA	784483	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA	0.015000	0.467662	-90(CCCTTTATAAGC,+,0.00),-90(CCCTTTATAAGC,-,0.00),-88(CTTTATAAGCGC,+,0.00)
mm_102760.1	chr11	67589063	67589263	-	1	NA	NA	NA	2663	NM_001109657	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.020000	0.592040	
mm_131888.1	chr16	23226001	23226201	+	1	NA	NA	NA	80	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.035000	0.557214	
mm_134679.1	chr16	22411736	22411936	-	1	NA	NA	NA	27734	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.020000	0.597015	
mm_78556.1	chr9	35559377	35559577	+	1	NA	NA	NA	11	NM_023292	67049	Mm.425574	NM_023292	ENSMUSG00000032103	Pus3	2610020J05Rik|5730412F04Rik	pseudouridine synthase 3	protein-coding	0.070000	0.557214	
mm_63178.1	chr7	125487318	125487518	+	1	NA	NA	NA	4124	NM_026330	67711	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.030000	0.592040	
mm_172480.1	chr7	4950945	4951145	-	1	NA	NA	NA	13303	NM_001146329	381836	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	0.035000	0.587065	
mm_97477.1	chr11	78323059	78323259	+	1	NA	NA	NA	86	NM_001303423	11676	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0.060000	0.597015	
mm_74264.1	chr8	124898343	124898543	+	1	NA	NA	NA	557	NM_001111141	244666	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	0.105000	0.666667	
mm_127201.1	chr15	99126465	99126665	+	1	NA	NA	NA	-280	NM_139140	72572	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.210000	0.825871	
mm_172676.1	chr8	4818624	4818824	-	1	NA	NA	NA	-39190	NM_011369	20419	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	0.010000	0.522388	-31(ACCTTTATAAAC,-,0.00),-29(CTTTATAAACGC,+,0.00)
mm_75687.1	chr8	68204817	68205017	-	1	NA	NA	NA	-71611	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.000000	0.417910	
mm_155890.1	chrX	101652267	101652467	+	1	NA	NA	NA	12149	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.005000	0.417910	
mm_40988.1	chr5	77266186	77266386	+	1	NA	NA	NA	792	NM_011263	19712	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.155000	0.791045	
mm_4879.1	chr1	187943240	187943440	+	1	NA	NA	NA	-54487	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.030000	0.462687	
mm_97757.1	chr11	80810281	80810481	+	1	NA	NA	NA	-34	NM_029537	103743	Mm.27682	NM_029537	ENSMUSG00000035413	Tmem98	6530411B15Rik|AI463522	transmembrane protein 98	protein-coding	0.110000	0.771144	
mm_89645.1	chr10	96725029	96725229	+	1	NA	NA	NA	108128	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.010000	0.502488	
mm_137676.1	chr17	28801062	28801262	+	1	NA	NA	NA	36	NM_001081315	268936	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0.120000	0.810945	
mm_171352.1	chr4	109676510	109676710	+	1	NA	NA	NA	-17	NM_007983	14084	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	0.120000	0.716418	
mm_64580.1	chr7	145283979	145284179	+	1	NA	NA	NA	-68	NR_132642	233979	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.025000	0.517413	
mm_45397.1	chr5	66151436	66151636	-	1	NA	NA	NA	418	NM_001127382	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.070000	0.711443	
mm_165726.1	chr3	104478713	104478913	+	1	NA	NA	NA	33105	NM_001310698	269473	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0.005000	0.462687	
mm_25809.1	chr3	127789894	127790094	+	1	NA	NA	NA	81	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.105000	0.716418	
mm_8.1	chr1	4807797	4807997	+	1	NA	NA	NA	4	NM_008866	18777	Mm.299955	NM_008866	ENSMUSG00000025903	Lypla1	Pla1a	lysophospholipase 1	protein-coding	0.165000	0.771144	
mm_48641.1	chr5	145201783	145201983	-	1	NA	NA	NA	-1	NM_023322	67235	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	0.070000	0.537313	84(CCTTTTCTGGGC,+,0.00)
mm_91061.1	chr10	18957865	18958065	-	1	NA	NA	NA	53998	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.010000	0.407960	
mm_152892.1	chr19	24861762	24861962	-	1	NA	NA	NA	-20	NM_175013	226041	Mm.105222	NM_175013	ENSMUSG00000041731	Pgm5	4833423B07|9530034F03Rik|D830025G17|aciculin	phosphoglucomutase 5	protein-coding	0.095000	0.741294	
mm_138375.1	chr17	35004612	35004812	+	1	NA	NA	NA	3805	NM_011690	22321	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.015000	0.522388	
mm_92532.1	chr10	79586973	79587173	-	1	NA	NA	NA	63	NM_199226	21830	Mm.89197	NM_011583	ENSMUSG00000020317	Theg	-	testicular haploid expressed gene	protein-coding	0.015000	0.542289	
mm_107775.1	chr12	59152979	59153179	+	1	NA	NA	NA	21626	NM_001165253	338320	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.010000	0.442786	
mm_51501.1	chr6	83109164	83109364	+	1	NA	NA	NA	156	NM_026744	68499	Mm.333183	NM_026744	ENSMUSG00000030037	Mrpl53	1110007K17Rik	mitochondrial ribosomal protein L53	protein-coding	0.115000	0.676617	
mm_46065.1	chr5	92278081	92278281	-	1	NA	NA	NA	0	NM_001163687	67111	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	0.050000	0.696517	
mm_142646.1	chr17	47501823	47502023	-	1	NA	NA	NA	364	NM_022015	63856	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0.025000	0.482587	
mm_84770.1	chr9	75642017	75642217	-	1	NA	NA	NA	16385	NM_027309	70082	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	0.000000	0.402985	
mm_40718.1	chr5	65955559	65955759	+	1	NA	NA	NA	-11465	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.035000	0.457711	
mm_122191.1	chr14	31728916	31729116	-	1	NA	NA	NA	87959	NM_025295	26363	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0.000000	0.398010	-34(AGCTATAAAAGG,-,0.00),11(GCATTTATAGTA,+,0.00)
mm_84979.1	chr9	85347955	85348155	-	1	NA	NA	NA	-20905	NM_001160379	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.010000	0.432836	
mm_169167.1	chr13	65503839	65504039	+	1	NA	NA	NA	225085	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.020000	0.527363	
mm_88661.1	chr10	80015714	80015914	+	1	NA	NA	NA	-858	NM_001142701	70719	Mm.243954	NM_027521	ENSMUSG00000035697	Hmha1	6330406L22Rik|AW539505|Ha-1	histocompatibility (minor) HA-1	protein-coding	0.020000	0.567164	
mm_120338.1	chr14	63493577	63493777	+	1	NA	NA	NA	15415	NM_021480	58865	Mm.354229	NM_021480	ENSMUSG00000021953	Tdh	-	L-threonine dehydrogenase	protein-coding	0.055000	0.601990	
mm_163947.1	chr14	51923012	51923212	-	1	NA	NA	NA	-339	NM_001011687	497071	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	0.005000	0.532338	
mm_19889.1	chr2	114050396	114050596	-	1	NA	NA	NA	2379	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.015000	0.537313	
mm_23533.1	chr3	60627830	60628030	+	1	NA	NA	NA	126751	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.010000	0.338308	15(ATCTATTAAAGC,-,0.00)
mm_130405.1	chr15	97976630	97976830	-	1	NA	NA	NA	12501	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.030000	0.572139	
mm_128391.1	chr15	43170722	43170922	-	1	NA	NA	NA	-4	NM_172815	239405	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.035000	0.547264	
mm_18189.1	chr2	45113108	45113308	-	1	NA	NA	NA	71	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.040000	0.507463	
mm_129823.1	chr15	83122010	83122210	-	1	NA	NA	NA	691	NM_029101	74778	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.045000	0.567164	
mm_17163.1	chr2	25255273	25255473	-	1	NA	NA	NA	41	NM_001252541	78797	Mm.40020	NM_178239	ENSMUSG00000006471	Ndor1	4930447P04Rik|NR1|Ndor	NADPH dependent diflavin oxidoreductase 1	protein-coding	0.070000	0.636816	
mm_3468.1	chr1	150104377	150104577	+	1	NA	NA	NA	4446	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.015000	0.492537	
mm_90162.1	chr10	119131010	119131210	+	1	NA	NA	NA	38205	NR_045348	73400	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	0.030000	0.487562	-43(GCGTTGAAAAGC,-,0.00)
mm_158901.1	chr1	32547193	32547393	-	1	NA	NA	NA	0	NM_001164286	408191	Mm.479439	NM_001164286	ENSMUSG00000091318	Gm5415	EG408191|Senp14	predicted gene 5415	protein-coding	0.030000	0.452736	
mm_143374.1	chr17	67632618	67632818	-	1	NA	NA	NA	5	NM_001033340	240131	Mm.295736	NM_001033340	ENSMUSG00000073375	Lrrc30	Gm326	leucine rich repeat containing 30	protein-coding	0.025000	0.582090	
mm_83360.1	chr9	44407222	44407422	-	1	NA	NA	NA	226	NM_021789	60409	Mm.29814	NM_021789	ENSMUSG00000032112	Trappc4	1500017G03Rik|AI303617|HSPC172|PTD009|Sbd|Sbdn|Sdcbp2|TRS23	trafficking protein particle complex 4	protein-coding	0.080000	0.611940	
mm_71907.1	chr8	70074364	70074564	+	1	NA	NA	NA	1540	NM_181540	107770	Mm.37974	NM_181540	ENSMUSG00000036151	Tm6sf2	-	transmembrane 6 superfamily member 2	protein-coding	0.010000	0.507463	
mm_65957.1	chr7	30428505	30428705	-	1	NA	NA	NA	5301	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.020000	0.512438	
mm_87056.1	chr10	28837457	28837657	+	1	NA	NA	NA	85950	NR_033601	114676	Mm.390292	NR_033601		4930519F09Rik	-	pyruvate dehydrogenase E1 alpha 1 pseudogene	pseudo	0.010000	0.343284	
mm_8422.1	chr1	152386580	152386780	-	1	NA	NA	NA	2	NM_025677	66637	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	0.110000	0.706468	
mm_112968.1	chr13	21286331	21286531	+	1	NA	NA	NA	6255	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.000000	0.378109	
mm_72381.1	chr8	81558791	81558991	+	1	NA	NA	NA	216329	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.005000	0.442786	
mm_122373.1	chr14	39473421	39473621	-	1	NA	NA	NA	-433	NM_008734	18183	Mm.258705	NM_008734	ENSMUSG00000041014	Nrg3	ska	neuregulin 3	protein-coding	0.130000	0.711443	
mm_9562.1	chr1	173974992	173975192	-	1	NA	NA	NA	7752	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.000000	0.378109	
mm_133431.1	chr16	87553424	87553624	+	1	NA	NA	NA	194	NM_144854	224419	Mm.194466	NM_144854	ENSMUSG00000025610	Map3k7cl	C21orf7|ORF63|Tak1l	Map3k7 C-terminal like	protein-coding	0.020000	0.567164	
mm_18407.1	chr2	60383200	60383400	-	1	NA	NA	NA	-69	NM_013825	17076	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	0.100000	0.741294	
mm_107091.1	chr12	17544776	17544976	+	1	NA	NA	NA	3	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.170000	0.761194	
mm_129090.1	chr15	75909481	75909681	-	1	NA	NA	NA	-25	NM_001285429	66656	Mm.258927	NM_023240	ENSMUSG00000055762	Eef1d	EF-1-delta	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	protein-coding	0.115000	0.666667	
mm_152827.1	chr19	23140545	23140745	-	1	NA	NA	NA	-581	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.035000	0.442786	
mm_123723.1	chr14	70153565	70153765	-	1	NA	NA	NA	126	NM_146055	219158	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	0.085000	0.696517	
mm_141201.1	chr17	27028526	27028726	-	1	NA	NA	NA	0	NM_007523	12018	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	0.055000	0.626866	
mm_74982.1	chr8	27141784	27141984	-	1	NA	NA	NA	-1026	NR_045840	71082	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.035000	0.517413	-85(AAATTTAAAAGG,-,0.00)
mm_117831.1	chr13	98316777	98316977	-	1	NA	NA	NA	90	NM_145455	218490	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	0.100000	0.666667	
mm_59442.1	chr7	27132486	27132686	+	1	NA	NA	NA	12631	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.030000	0.462687	
mm_164315.1	chr15	103899208	103899408	-	1	NA	NA	NA	4	NM_009267	20770	Mm.1280	NM_009267	ENSMUSG00000036925	Mucl2	Spt-1|Spt1	mucin-like 2	protein-coding	0.000000	0.477612	
mm_71382.1	chr8	45975436	45975636	+	1	NA	NA	NA	8	NM_138668	192169	Mm.210882	NM_138668	ENSMUSG00000031634	Ufsp2	1810047C23Rik	UFM1-specific peptidase 2	protein-coding	0.075000	0.577114	
mm_98345.1	chr11	93099571	93099771	+	1	NA	NA	NA	381	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	0.045000	0.597015	
mm_79351.1	chr9	53771555	53771755	+	1	NA	NA	NA	120	NM_028060	72022	Mm.26159	NM_028060	ENSMUSG00000042195	Slc35f2	1500009K05Rik|AU019213	solute carrier family 35, member F2	protein-coding	0.100000	0.641791	
mm_82007.1	chr9	121710282	121710482	+	1	NA	NA	NA	-7	NM_026794	26901	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	0.105000	0.621891	
mm_75872.1	chr8	70764509	70764709	-	1	NA	NA	NA	2054	NM_023065	65972	Mm.30241	NM_023065	ENSMUSG00000031838	Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	0.035000	0.577114	
mm_124414.1	chr14	118012902	118013102	-	1	NA	NA	NA	39244	NM_010024	13190	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	0.030000	0.492537	-81(CGCCCTTAATGG,-,0.00),-79(CCCTTAATGGAG,+,0.00)
mm_86581.1	chr10	12976223	12976423	+	1	NA	NA	NA	-12064	NM_001163591	74732	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.020000	0.452736	
mm_99879.1	chr11	109425889	109426089	+	1	NA	NA	NA	43	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.080000	0.666667	
mm_124584.1	chr14	124677456	124677656	-	1	NA	NA	NA	-429	NM_207667	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.025000	0.562189	
mm_101971.1	chr11	50311658	50311858	-	1	NA	NA	NA	13915	NM_001110499	12330	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	0.020000	0.467662	
mm_17576.1	chr2	30414075	30414275	-	1	NA	NA	NA	1573	NM_007760	12908	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.010000	0.552239	
mm_159911.1	chr6	48413029	48413229	+	1	NA	NA	NA	17543	NM_001347153	77827	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	0.020000	0.597015	
mm_68029.1	chr7	101011919	101012119	-	1	NA	NA	NA	-21	NM_008773	18442	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0.095000	0.741294	
mm_52434.1	chr6	113537711	113537911	+	1	NA	NA	NA	6129	NM_001347350	211651	Mm.160061	NM_001033244	ENSMUSG00000034023	Fancd2	2410150O07Rik|AU015151|BB137857|FA-D2|FA4|FACD|FAD|FANCD	Fanconi anemia, complementation group D2	protein-coding	0.010000	0.452736	
mm_35715.1	chr4	44524929	44525129	-	1	NA	NA	NA	-177771	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0.000000	0.358209	
mm_118088.1	chr13	103768357	103768557	-	1	NA	NA	NA	-3875	NM_172592	218543	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0.000000	0.228856	
mm_123527.1	chr14	66803367	66803567	-	1	NA	NA	NA	65133	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.000000	0.308458	-69(TTGTTTTAAAGG,-,0.00)
mm_100227.1	chr11	117143741	117143941	+	1	NA	NA	NA	28669	NM_001166506	74136	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.030000	0.567164	-70(TACCTTAAAGGG,-,0.00),-68(CCTTAAAGGGGA,+,0.00)
mm_108186.1	chr12	76571431	76571631	+	1	NA	NA	NA	-23606	NR_046044	100504549	Mm.440349	NR_046044		AI463170	-	expressed sequence AI463170	ncRNA	0.020000	0.582090	
mm_144776.1	chr18	35829710	35829910	+	1	NA	NA	NA	-8	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.125000	0.736318	
mm_27686.1	chr3	65958453	65958653	-	1	NA	NA	NA	-328	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.095000	0.626866	-62(GCCTTTCTAGGC,+,0.00)
mm_71122.1	chr8	36248461	36248661	+	1	NA	NA	NA	955	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.145000	0.786070	
mm_101802.1	chr11	46286910	46287110	-	1	NA	NA	NA	25348	NM_001252460	76884	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0.015000	0.482587	89(TCTTTTAGACAC,+,0.00)
mm_115579.1	chr13	11584644	11584844	-	1	NA	NA	NA	62692	NR_027813	664793	Mm.410565	NR_027813		Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo	0.005000	0.378109	
mm_133339.1	chr16	81200613	81200813	+	1	NA	NA	NA	16	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.175000	0.815920	
mm_151545.1	chr19	59284126	59284326	+	1	NA	NA	NA	23348	NM_172523	214084	Mm.268797	NM_172523	ENSMUSG00000025094	Slc18a2	1110037L13Rik|9330105E13|Vmat2	solute carrier family 18 (vesicular monoamine), member 2	protein-coding	0.005000	0.348259	
mm_43588.1	chr5	137747624	137747824	+	1	NA	NA	NA	1755	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.025000	0.641791	
mm_114243.1	chr13	56625554	56625754	+	1	NA	NA	NA	16051	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.030000	0.567164	
mm_86908.1	chr10	22648906	22649106	+	1	NA	NA	NA	3995	NM_178934	353169	Mm.473705	NM_178934	ENSMUSG00000037490	Slc2a12	GLUT-12|Glut12	solute carrier family 2 (facilitated glucose transporter), member 12	protein-coding	0.010000	0.512438	-81(GCTTTTATGACC,+,0.00)
mm_113245.1	chr13	27348910	27349110	+	1	NA	NA	NA	3337	NM_001289919	13529	Mm.291450	NM_010088	ENSMUSG00000018259	Prl8a2	D/tPRP|DPRP|Dtprp|Ghd11|mdPRP	prolactin family 8, subfamily a, member 2	protein-coding	0.005000	0.373134	
mm_58903.1	chr7	17163598	17163798	+	1	NA	NA	NA	13298	NM_054059	384557	Mm.486145	NM_054059	ENSMUSG00000053228	Ceacam3	EG384557|Psg24|cea12	carcinoembryonic antigen-related cell adhesion molecule 3	protein-coding	0.010000	0.422886	
mm_135466.1	chr16	45843379	45843579	-	1	NA	NA	NA	899	NM_153412	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology like domain, family B, member 2	protein-coding	0.025000	0.502488	-44(CTGTTTAAAAGA,-,0.00)
mm_85003.1	chr9	86880383	86880583	-	1	NA	NA	NA	-34	NM_001277983	20616	Mm.281651	NM_013669	ENSMUSG00000033419	Snap91	91kDa|AP180|F1-20|mKIAA0656	synaptosomal-associated protein 91	protein-coding	0.135000	0.771144	
mm_164533.1	chr17	6296631	6296831	+	1	NA	NA	NA	20743	NM_001166629	100310872	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	0.005000	0.402985	65(TCTTAAATGGGG,+,0.00)
mm_10904.1	chr2	25332657	25332857	+	1	NA	NA	NA	14	NM_001029983	227619	Mm.270798	NM_001029983	ENSMUSG00000036646	Man1b1	E430019H13Rik|ERMan1|Gm108|MANA-ER	mannosidase, alpha, class 1B, member 1	protein-coding	0.100000	0.621891	
mm_169746.1	chr1	58646512	58646712	+	1	NA	NA	NA	-6029	NR_045007	100504501	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo	0.060000	0.502488	
mm_61728.1	chr7	81859233	81859433	+	1	NA	NA	NA	332	NM_145375	107769	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.135000	0.756219	
mm_172225.1	chr6	66875609	66875809	-	1	NA	NA	NA	-20688	NM_001177557	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.055000	0.502488	
mm_88566.1	chr10	79665405	79665605	+	1	NA	NA	NA	931	NM_013591	17123	Mm.391556	NM_013591	ENSMUSG00000020310	Madcam1	AV211525	mucosal vascular addressin cell adhesion molecule 1	protein-coding	0.020000	0.616915	
mm_146532.1	chr18	5334645	5334845	-	1	NA	NA	NA	-306	NM_178722	240186	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.065000	0.577114	
mm_77050.1	chr8	109577085	109577285	-	1	NA	NA	NA	1987	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.040000	0.567164	
mm_139140.1	chr17	47509540	47509740	+	1	NA	NA	NA	4589	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.030000	0.522388	
mm_84351.1	chr9	64340889	64341089	-	1	NA	NA	NA	-216	NM_001177784	213550	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	0.120000	0.731343	
mm_41711.1	chr5	101814405	101814605	+	1	NA	NA	NA	49375	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.040000	0.517413	
mm_161461.1	chr15	77447340	77447540	-	1	NA	NA	NA	20	NM_001024848	278679	Mm.440965	NM_001024848	ENSMUSG00000068252	Apol7b	-	apolipoprotein L 7b	protein-coding	0.005000	0.502488	-34(GGGTATATAAGC,-,0.00)
mm_121415.1	chr14	119654958	119655158	+	1	NA	NA	NA	-94169	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA	0.005000	0.273632	9(CTCTTTTTAAAC,-,0.00),11(CTTTTTAAACCA,+,0.00)
mm_31925.1	chr4	85413894	85414094	+	1	NA	NA	NA	208538	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.015000	0.388060	
mm_107006.1	chr12	11311469	11311669	+	1	NA	NA	NA	11682	NR_106136	102465775		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.000000	0.298507	-72(GAGCCTAAAAGA,-,0.00)
mm_149350.1	chr19	10895194	10895394	+	1	NA	NA	NA	63	NM_001253843	28000	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	0.110000	0.676617	
mm_120356.1	chr14	64085414	64085614	+	1	NA	NA	NA	-125	NM_001081063	71037	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	0.005000	0.497512	
mm_43924.1	chr5	144771234	144771434	+	1	NA	NA	NA	2542	NM_001081362	100683	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0.020000	0.492537	
mm_163553.1	chr13	23839527	23839727	+	1	NA	NA	NA	193	NM_134069	105355	Mm.27038	NM_134069	ENSMUSG00000036083	Slc17a3	AW261723|Npt4	solute carrier family 17 (sodium phosphate), member 3	protein-coding	0.000000	0.462687	
mm_58970.1	chr7	18992334	18992534	+	1	NA	NA	NA	1189	NM_145579	232934	Mm.440069	NM_145579	ENSMUSG00000048481	Mypop	Myodysa|P42pop	Myb-related transcription factor, partner of profilin	protein-coding	0.100000	0.701493	
mm_3234.1	chr1	135850004	135850204	+	1	NA	NA	NA	9243	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.010000	0.442786	
mm_167963.1	chrX	150552175	150552375	+	1	NA	NA	NA	-4830	NR_106147	102465782		NR_106147	ENSMUSG00000099172	Mir3620	Gm27984|mmu-mir-3620	microRNA 3620	ncRNA	0.010000	0.512438	
mm_105651.1	chr11	107189181	107189381	-	1	NA	NA	NA	100	NM_133702	68979	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.065000	0.592040	
mm_86518.1	chr10	7725906	7726106	+	1	NA	NA	NA	6	NM_011835	23924	Mm.28127	NM_011835	ENSMUSG00000019794	Katna1	-	katanin p60 (ATPase-containing) subunit A1	protein-coding	0.125000	0.676617	38(CCTTTTAAGAGG,+,0.00),39(CTTTTAAGAGGG,+,0.00)
mm_91466.1	chr10	34151814	34152014	-	1	NA	NA	NA	-23942	NM_175449	215900	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik	family with sequence similarity 26, member F	protein-coding	0.000000	0.298507	
mm_47640.1	chr5	125340919	125341119	-	1	NA	NA	NA	75	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.075000	0.681592	
mm_59456.1	chr7	27195722	27195922	+	1	NA	NA	NA	41	NM_001243888	414069	Mm.379069	NM_001243888	ENSMUSG00000078786	BC024978	-	cDNA sequence BC024978	protein-coding	0.085000	0.572139	
mm_126721.1	chr15	85393342	85393542	+	1	NA	NA	NA	57061	NM_016843	54138	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.020000	0.388060	-44(CTCTCTAAAAGC,-,0.00)
mm_116704.1	chr13	50934067	50934267	-	1	NA	NA	NA	166560	NR_029463	77428	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0.015000	0.477612	
mm_87166.1	chr10	37078526	37078726	+	1	NA	NA	NA	60300	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.005000	0.527363	
mm_26034.1	chr3	135485537	135485737	+	1	NA	NA	NA	26	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.080000	0.666667	
mm_155717.1	chrX	96106948	96107148	+	1	NA	NA	NA	11003	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.005000	0.358209	
mm_102392.1	chr11	58999129	58999329	-	1	NA	NA	NA	21136	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.015000	0.631841	
mm_38713.1	chr4	145225372	145225572	-	1	NA	NA	NA	21398	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.030000	0.567164	
mm_29135.1	chr3	105785758	105785958	-	1	NA	NA	NA	15523	NM_145541	109905	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein-1a	protein-coding	0.000000	0.328358	
mm_128477.1	chr15	50889577	50889777	-	1	NA	NA	NA	364	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.045000	0.626866	
mm_135926.1	chr16	70006394	70006594	-	1	NA	NA	NA	-142750	NM_173069	224318	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0.000000	0.507463	
mm_22765.1	chr3	20058244	20058444	+	1	NA	NA	NA	53	NR_105047	20585	Mm.209650	NM_009210	ENSMUSG00000002428	Hltf	AF010600|BC057116|P113|Smarca3|Snf2l3	helicase-like transcription factor	protein-coding	0.035000	0.472637	
mm_138784.1	chr17	37270583	37270783	+	1	NA	NA	NA	449	NM_013819	14991	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	0.035000	0.497512	
mm_164642.1	chr17	35067015	35067215	+	1	NA	NA	NA	-210	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.000000	0.547264	
mm_128747.1	chr15	64382848	64383048	-	1	NA	NA	NA	-29	NM_010026	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.130000	0.711443	
mm_169558.1	chr15	103917149	103917349	-	1	NA	NA	NA	-17937	NM_009267	20770	Mm.1280	NM_009267	ENSMUSG00000036925	Mucl2	Spt-1|Spt1	mucin-like 2	protein-coding	0.025000	0.502488	-33(GAGTATTTAAGG,-,0.00)
mm_152190.1	chr19	7441498	7441698	-	1	NA	NA	NA	19025	NR_105957	102466781		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	0.055000	0.631841	
mm_3047.1	chr1	134040646	134040846	+	1	NA	NA	NA	3231	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.030000	0.582090	
mm_48085.1	chr5	136987435	136987635	-	1	NA	NA	NA	424	NM_027318	70103	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	0.100000	0.661692	
mm_131497.1	chr16	17336185	17336385	+	1	NA	NA	NA	4914	NM_001331047	15160	Mm.6609	NM_008223	ENSMUSG00000022766	Serpind1	AA985900|AI303446|HC-II|HCII|Hcf2	serine (or cysteine) peptidase inhibitor, clade D, member 1	protein-coding	0.000000	0.482587	
mm_146205.1	chr18	76595642	76595842	+	1	NA	NA	NA	-260663	NM_001109743	664805	Mm.329543	NM_001109743	ENSMUSG00000091519	Skor2	Corl2|EG664805|Fussel18|Gm7348	SKI family transcriptional corepressor 2	protein-coding	0.005000	0.502488	-35(CTTCTTAAAAGG,-,0.00)
mm_47327.1	chr5	122489220	122489420	-	1	NA	NA	NA	12905	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.010000	0.383085	
mm_54303.1	chr6	29526380	29526580	-	1	NA	NA	NA	-145	NM_001311083	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.100000	0.706468	
mm_35047.1	chr4	4765305	4765505	-	1	NA	NA	NA	27901	NM_177730	242291	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	0.010000	0.412935	51(TCTTATAAACTC,+,0.00)
mm_127591.1	chr15	102386829	102387029	+	1	NA	NA	NA	-19387	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.035000	0.537313	
mm_103036.1	chr11	69758536	69758736	-	1	NA	NA	NA	-3	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.095000	0.651741	-33(ATCTATAAAGGG,-,0.00)
mm_15799.1	chr2	164460882	164461082	+	1	NA	NA	NA	11	NM_025575	66460	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0.080000	0.671642	
mm_73217.1	chr8	97142057	97142257	+	1	NA	NA	NA	-596184	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.000000	0.323383	
mm_66298.1	chr7	38107369	38107569	-	1	NA	NA	NA	21	NM_007633	12447	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	0.170000	0.786070	
mm_21619.1	chr2	164275988	164276188	-	1	NA	NA	NA	2219	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.025000	0.507463	
mm_92450.1	chr10	77751323	77751523	-	1	NA	NA	NA	19902	NM_001101630	100041261	Mm.477434	NM_001101630	ENSMUSG00000095817	Gm3238	-	predicted gene 3238	protein-coding	0.000000	0.512438	
mm_77897.1	chr9	7348535	7348735	+	1	NA	NA	NA	1261	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.402985	
mm_132076.1	chr16	30067036	30067236	+	1	NA	NA	NA	1779	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hairy and enhancer of split 1 (Drosophila)	protein-coding	0.125000	0.771144	
mm_74900.1	chr8	25201304	25201504	-	1	NA	NA	NA	138	NM_199323	320165	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.175000	0.776119	
mm_170362.1	chr1	85270257	85270457	-	1	NA	NA	NA	209	NM_175219	620078	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik|OTTMUSG00000029174	RIKEN cDNA C130026I21 gene	protein-coding	0.015000	0.552239	
mm_139296.1	chr17	48316124	48316324	+	1	NA	NA	NA	62	NM_177083	320148	Mm.123455	NM_177083	ENSMUSG00000043740	B430306N03Rik	Treml6	RIKEN cDNA B430306N03 gene	protein-coding	0.000000	0.547264	
mm_32391.1	chr4	106622351	106622551	+	1	NA	NA	NA	2	NM_177667	230576	Mm.41945	NM_177667	ENSMUSG00000034919	Ttc22	4732467L16Rik	tetratricopeptide repeat domain 22	protein-coding	0.050000	0.661692	
mm_119624.1	chr14	51128999	51129199	+	1	NA	NA	NA	31	NM_030098	78416	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	0.010000	0.512438	
mm_73467.1	chr8	106668638	106668838	+	1	NA	NA	NA	-14330	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.000000	0.398010	
mm_124836.1	chr15	9279753	9279953	+	1	NA	NA	NA	24	NM_207216	105887	Mm.482274	NM_207216	ENSMUSG00000072664	Ugt3a1	AI746432	UDP glycosyltransferases 3 family, polypeptide A1	protein-coding	0.005000	0.452736	
mm_104574.1	chr11	96944840	96945040	-	1	NA	NA	NA	794	NR_003293	319371	Mm.436865	NR_003293	ENSMUSG00000078700	D030028A08Rik	-	RIKEN cDNA D030028A08 gene	ncRNA	0.030000	0.547264	
mm_71653.1	chr8	60506017	60506217	+	1	NA	NA	NA	-7	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.035000	0.587065	
mm_54405.1	chr6	31563768	31563968	-	1	NA	NA	NA	69	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	0.145000	0.766169	
mm_46143.1	chr5	93190181	93190381	-	1	NA	NA	NA	16214	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.005000	0.243781	-78(GTTTTTAAAGAA,+,0.00)
mm_77270.1	chr8	116529289	116529489	-	1	NA	NA	NA	24374	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.000000	0.482587	
mm_22955.1	chr3	32397152	32397352	+	1	NA	NA	NA	-31587	NM_009517	22401	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0.145000	0.731343	
mm_82088.1	chr9	123046441	123046641	+	1	NA	NA	NA	11800	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.025000	0.502488	
mm_13345.1	chr2	102940966	102941166	+	1	NA	NA	NA	-39401	NM_001039150	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.025000	0.532338	
mm_66172.1	chr7	33944887	33945087	-	1	NA	NA	NA	-2	NM_178308	110187	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	0.005000	0.502488	-30(TGTTTTATAAGG,-,0.00)
mm_115222.1	chr13	109685470	109685670	+	1	NA	NA	NA	-218239	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.040000	0.552239	
mm_13110.1	chr2	91537725	91537925	+	1	NA	NA	NA	-8497	NM_001165989	75786	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0.060000	0.626866	
mm_86421.1	chr10	3740289	3740489	+	1	NA	NA	NA	12	NM_001159942	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.130000	0.756219	
mm_51125.1	chr6	68219851	68220051	+	1	NA	NA	NA	-654252	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.005000	0.447761	
mm_132759.1	chr16	44531126	44531326	+	1	NA	NA	NA	26903	NR_037242	100526478		NR_037242	ENSMUSG00000093046	Mir3081	mir-3081|mmu-mir-3081	microRNA 3081	ncRNA	0.030000	0.462687	
mm_105044.1	chr11	100613287	100613487	-	1	NA	NA	NA	6781	NM_019795	56354	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0.015000	0.467662	
mm_145777.1	chr18	65072139	65072339	+	1	NA	NA	NA	48712	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.020000	0.512438	
mm_82621.1	chr9	21798432	21798632	-	1	NA	NA	NA	14	NM_145611	235041	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	0.125000	0.761194	
mm_124600.1	chr15	3275619	3275819	+	1	NA	NA	NA	4742	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.010000	0.402985	-50(TCTTAAAAAGCA,+,0.00)
mm_134771.1	chr16	23520902	23521102	-	1	NA	NA	NA	-412	NM_008555	17174	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0.000000	0.432836	
mm_141992.1	chr17	35175917	35176117	-	1	NA	NA	NA	-16	NM_019467	11629	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.010000	0.552239	
mm_118113.1	chr13	103921697	103921897	-	1	NA	NA	NA	-1211	NM_001005868	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.065000	0.537313	
mm_86283.1	chr9	121857465	121857665	-	1	NA	NA	NA	435	NM_019814	56295	Mm.347915	NM_019814	ENSMUSG00000038412	Higd1a	2210020B17Rik|7420700H20Rik|AI303276|AW049839|HIMP1|Hig1	HIG1 domain family, member 1A	protein-coding	0.110000	0.726368	
mm_43643.1	chr5	138255995	138256195	+	1	NA	NA	NA	613	NM_001081108	66096	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	0.015000	0.567164	
mm_39059.1	chr4	154023693	154023893	-	1	NA	NA	NA	2251	NM_001163722	68859	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	0.015000	0.582090	
mm_61950.1	chr7	90195903	90196103	+	1	NA	NA	NA	65771	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.005000	0.323383	
mm_47407.1	chr5	123132319	123132519	-	1	NA	NA	NA	210	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.085000	0.736318	
mm_20399.1	chr2	129199089	129199289	-	1	NA	NA	NA	416	NM_001159593	20515	Mm.272675	NM_015747	ENSMUSG00000027397	Slc20a1	AI607883|Glvr-1|Glvr1	solute carrier family 20, member 1	protein-coding	0.145000	0.741294	
mm_92357.1	chr10	75921450	75921650	-	1	NA	NA	NA	64	NM_011418	20587	Mm.279751	NM_011418	ENSMUSG00000000902	Smarcb1	AU020204|Baf47|Ini1|SNF5/INI1|Snf5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding	0.135000	0.711443	
mm_46153.1	chr5	96092416	96092616	-	1	NA	NA	NA	69031	NM_001285511	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.000000	0.263682	18(ACCTTTATATGC,-,0.00),20(CTTTATATGCAC,+,0.00)
mm_66216.1	chr7	34389507	34389707	-	1	NA	NA	NA	-67	NM_025948	67070	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral	LSM14A mRNA processing body assembly factor	protein-coding	0.170000	0.791045	
mm_101711.1	chr11	42000778	42000978	-	1	NA	NA	NA	-164	NM_008073	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding	0.010000	0.427861	
mm_168927.1	chr12	63691492	63691692	-	1	NA	NA	NA	783306	NM_001163271	623046	Mm.189552	NM_001163271	ENSMUSG00000043060	Fscb	EG623046	fibrous sheath CABYR binding protein	protein-coding	0.040000	0.497512	
mm_142952.1	chr17	56109720	56109920	-	1	NA	NA	NA	-18	NM_020568	57435	Mm.12966	NM_020568	ENSMUSG00000002831	Plin4	S3-12|mKIAA1881	perilipin 4	protein-coding	0.035000	0.681592	1(GACCCTATAAGG,-,0.00),3(CCCTATAAGGCT,+,0.00)
mm_80998.1	chr9	103424966	103425166	+	1	NA	NA	NA	1488	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.030000	0.507463	
mm_56406.1	chr6	97178983	97179183	-	1	NA	NA	NA	41	NM_001081111	232286	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	0.135000	0.751244	
mm_28785.1	chr3	95995577	95995777	-	1	NA	NA	NA	162	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.105000	0.696517	
mm_80339.1	chr9	75071308	75071508	+	1	NA	NA	NA	202	NM_010864	17918	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	0.140000	0.781095	
mm_96669.1	chr11	69410467	69410667	+	1	NA	NA	NA	3108	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.050000	0.527363	
mm_100787.1	chr11	4849233	4849433	-	1	NA	NA	NA	211	NM_001252250	18016	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	0.145000	0.721393	
mm_39936.1	chr5	31698689	31698889	+	1	NA	NA	NA	739	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.005000	0.348259	
mm_121875.1	chr14	21049352	21049552	-	1	NA	NA	NA	2990	NM_018829	55946	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.005000	0.308458	
mm_127325.1	chr15	100304135	100304335	+	1	NA	NA	NA	-582	NM_027334	70152	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	0.010000	0.422886	
mm_94520.1	chr11	8773542	8773742	+	1	NA	NA	NA	-109107	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.035000	0.462687	
mm_139022.1	chr17	46124171	46124371	+	1	NA	NA	NA	13267	NM_026768	68565	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	0.030000	0.601990	
mm_14942.1	chr2	151572551	151572751	+	1	NA	NA	NA	28	NM_145535	228765	Mm.32068	NM_145535	ENSMUSG00000027456	Sdcbp2	-	syndecan binding protein (syntenin) 2	protein-coding	0.035000	0.606965	
mm_136853.1	chr17	12793837	12794037	+	1	NA	NA	NA	-24231	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.015000	0.452736	
mm_146140.1	chr18	74733744	74733944	+	1	NA	NA	NA	44611	NR_028560	100217466		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	0.010000	0.502488	
mm_160720.1	chr10	63429872	63430072	+	1	NA	NA	NA	-126	NM_177612	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.165000	0.691542	
mm_51092.1	chr6	67226351	67226551	+	1	NA	NA	NA	-40528	NM_001113564	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.010000	0.492537	
mm_109006.1	chr12	103336769	103336969	+	1	NA	NA	NA	19132	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.015000	0.532338	
mm_123934.1	chr14	73368227	73368427	-	1	NA	NA	NA	16944	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.040000	0.487562	
mm_6817.1	chr1	84183000	84183200	-	1	NA	NA	NA	35861	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.025000	0.437811	
mm_16111.1	chr2	169664830	169665030	+	1	NA	NA	NA	31284	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.005000	0.477612	
mm_16772.1	chr2	9880947	9881147	-	1	NA	NA	NA	-199	NR_024257	381347	Mm.441450	NR_024257		4930412O13Rik	ENSMUSG00000075535|Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.030000	0.567164	
mm_32969.1	chr4	120032644	120032844	+	1	NA	NA	NA	-128462	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.125000	0.746269	
mm_70988.1	chr8	27262653	27262853	+	1	NA	NA	NA	2426	NM_007918	13685	Mm.6700	NM_007918	ENSMUSG00000031490	Eif4ebp1	4e-bp1|AA959816|PHAS-I	eukaryotic translation initiation factor 4E binding protein 1	protein-coding	0.005000	0.412935	
mm_105979.1	chr11	115590757	115590957	-	1	NA	NA	NA	13059	NM_001252067	260302	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	0.010000	0.577114	
mm_141574.1	chr17	32321009	32321209	-	1	NA	NA	NA	129	NM_019774	56399	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	0.085000	0.572139	
mm_26288.1	chr3	142506651	142506851	+	1	NA	NA	NA	9817	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.020000	0.442786	
mm_79489.1	chr9	57071971	57072171	+	1	NA	NA	NA	31	NM_001110351	20466	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	0.040000	0.522388	
mm_29702.1	chr3	123225035	123225235	-	1	NA	NA	NA	11014	NM_080451	118449	Mm.34359	NM_080451	ENSMUSG00000050315	Synpo2	1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo	synaptopodin 2	protein-coding	0.010000	0.318408	
mm_78872.1	chr9	44482442	44482642	+	1	NA	NA	NA	-16594	NM_030256	80288	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.030000	0.567164	
mm_122462.1	chr14	45477763	45477963	-	1	NA	NA	NA	52202	NM_146054	218952	Mm.210018	NM_146054	ENSMUSG00000037712	Fermt2	AA960555|Kindlin-2|Mig2|Plekhc1	fermitin family member 2	protein-coding	0.025000	0.527363	
mm_165911.1	chr4	57778971	57779171	+	1	NA	NA	NA	-66177	NM_009649	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.005000	0.238806	
mm_56777.1	chr6	116633211	116633411	-	1	NA	NA	NA	-4312	NM_026057	67255	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0.015000	0.517413	
mm_66650.1	chr7	45706812	45707012	-	1	NA	NA	NA	1665	NM_016974	13170	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.135000	0.796020	
mm_143800.1	chr17	83221109	83221309	-	1	NA	NA	NA	5926	NM_134117	106522	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.035000	0.572139	
mm_129541.1	chr15	79357695	79357895	-	1	NA	NA	NA	9393	NM_001304832	17133	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.130000	0.761194	
mm_125058.1	chr15	25910406	25910606	+	1	NA	NA	NA	-23046	NM_001277318	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.015000	0.507463	
mm_23036.1	chr3	34699846	34700046	+	1	NA	NA	NA	16716	NR_038347	100041108	Mm.24764	NR_038347	ENSMUSG00000105153	Gm3143	-	predicted gene 3143	ncRNA	0.025000	0.477612	
mm_146649.1	chr18	11051280	11051480	-	1	NA	NA	NA	-1130	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.035000	0.502488	
mm_167431.1	chr8	118438025	118438225	+	1	NA	NA	NA	154514	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.005000	0.492537	
mm_118709.1	chr14	22180239	22180439	+	1	NA	NA	NA	160627	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.000000	0.303483	
mm_165054.1	chr19	41339387	41339587	+	1	NA	NA	NA	45583	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.045000	0.626866	
mm_84472.1	chr9	66795209	66795409	-	1	NA	NA	NA	114	NM_177583	208117	Mm.41291	NM_177583	ENSMUSG00000032375	Aph1b	2310057K14Rik|Aph1c	aph1 homolog B, gamma secretase subunit	protein-coding	0.115000	0.666667	
mm_41832.1	chr5	104202517	104202717	+	1	NA	NA	NA	0	NM_016779	13406	Mm.199008	NM_016779	ENSMUSG00000029307	Dmp1	AV020965|Dmp|PP	dentin matrix protein 1	protein-coding	0.020000	0.542289	
mm_43884.1	chr5	143817757	143817957	+	1	NA	NA	NA	-54005	NM_013557	15467	Mm.389709	NM_013557	ENSMUSG00000029613	Eif2ak1	HCR|Hri	eukaryotic translation initiation factor 2 alpha kinase 1	protein-coding	0.115000	0.676617	
mm_124709.1	chr15	6569389	6569589	+	1	NA	NA	NA	-10358	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.015000	0.492537	
mm_110395.1	chr12	44203115	44203315	-	1	NA	NA	NA	6853	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.015000	0.467662	
mm_85019.1	chr9	88380121	88380321	-	1	NA	NA	NA	52612	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	0.025000	0.512438	
mm_161022.1	chr11	121207722	121207922	+	1	NA	NA	NA	179	NM_001146073	238023	Mm.275130	NM_001001333	ENSMUSG00000039307	Hexdc	BC069960	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing	protein-coding	0.030000	0.527363	-89(GGACCTTAAAGG,-,0.00),-88(GACCTTAAAGGA,-,0.00)
mm_103139.1	chr11	70238307	70238507	-	1	NA	NA	NA	-493	NM_145758	104457	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	0.070000	0.567164	
mm_58052.1	chr6	136857154	136857354	-	1	NA	NA	NA	346	NM_026639	109978	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	0.025000	0.567164	
mm_168816.1	chr12	21960100	21960300	+	1	NA	NA	NA	196446	NR_136920	100043416		NM_001004167	ENSMUSG00000093846	Gm4425	EG432637|Gm5433	KRAB-domain protein pseudogene	pseudo	0.005000	0.407960	
mm_30387.1	chr3	152247115	152247315	-	1	NA	NA	NA	19105	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.020000	0.398010	-23(GTTTTTAAAGAG,+,0.00)
mm_115766.1	chr13	19304344	19304544	-	1	NA	NA	NA	91369	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.432836	
mm_93705.1	chr10	118556434	118556634	-	1	NA	NA	NA	-9	NR_104123	103214	Mm.30529	NR_104123		Tmevpg1	AI447422	Theiler's murine encephalomyelitis virus persistence candidate gene 1	ncRNA	0.010000	0.472637	-29(GACTCTTTAAGA,-,0.00),-27(CTCTTTAAGAGG,-,0.00)
mm_149051.1	chr19	8837504	8837704	+	1	NA	NA	NA	137	NM_001136064	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.095000	0.676617	
mm_35993.1	chr4	55532201	55532401	-	1	NA	NA	NA	174	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.140000	0.805970	
mm_57263.1	chr6	123285477	123285677	-	1	NA	NA	NA	4294	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.005000	0.348259	
mm_36171.1	chr4	62054015	62054215	-	1	NA	NA	NA	2	NM_001012323	381530	Mm.460005	NM_001012323	ENSMUSG00000078672	Mup20	Gm12560|Mup24|OTTMUSG00000007485|darcin	major urinary protein 20	protein-coding	0.010000	0.363184	
mm_7528.1	chr1	124208369	124208569	-	1	NA	NA	NA	-162910	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.507463	
mm_65027.1	chr7	18474919	18475119	-	1	NA	NA	NA	9130	NM_001029893	574429	Mm.296754	NM_001029893	ENSMUSG00000070799	Psg26	EG574429|cea14	pregnancy-specific glycoprotein 26	protein-coding	0.000000	0.502488	
mm_157089.1	chrX	9436948	9437148	-	1	NA	NA	NA	32276	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.293532	-63(GCTTAAATACCT,+,0.00)
mm_23906.1	chr3	83031996	83032196	+	1	NA	NA	NA	5943	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.025000	0.467662	
mm_140974.1	chr17	24696102	24696302	-	1	NA	NA	NA	-32	NM_027988	71893	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	0.155000	0.835821	
mm_46382.1	chr5	103977282	103977482	-	1	NA	NA	NA	6	NM_198030	243168	Mm.284944	NM_198030	ENSMUSG00000034528	Hsd17b13	AI047820|PAN1B-like|Pan1b	hydroxysteroid (17-beta) dehydrogenase 13	protein-coding	0.010000	0.497512	
mm_17762.1	chr2	32788190	32788390	-	1	NA	NA	NA	-3885	NM_025619	227736	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	0.040000	0.562189	
mm_71352.1	chr8	45658204	45658404	+	1	NA	NA	NA	-3689	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.005000	0.417910	
mm_116345.1	chr13	38528342	38528542	-	1	NA	NA	NA	42	NM_145367	105245	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	0.140000	0.796020	
mm_170966.1	chr2	58256675	58256875	+	1	NA	NA	NA	-20004	NR_040365	100502932	Mm.417207	NR_040365	ENSMUSG00000086995	Gm13544	OTTMUSG00000012672	predicted gene 13544	ncRNA	0.040000	0.507463	
mm_118475.1	chr14	11617577	11617777	+	1	NA	NA	NA	64124	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.020000	0.502488	
mm_99620.1	chr11	104633495	104633695	+	1	NA	NA	NA	25595	NM_016780	16416	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding	0.025000	0.527363	
mm_3929.1	chr1	162857145	162857345	+	1	NA	NA	NA	2755	NM_001330291	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.000000	0.542289	
mm_12161.1	chr2	62147751	62147951	+	1	NA	NA	NA	101336	NM_033552	94229	Mm.314497	NM_033552	ENSMUSG00000026904	Slc4a10	NCBE|mKIAA4136	solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	protein-coding	0.010000	0.462687	
mm_21554.1	chr2	164077806	164078006	-	1	NA	NA	NA	3728	NM_021420	58231	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.015000	0.378109	-96(TCTTATAAACAG,+,0.00),-85(GCTTATATAAAG,+,0.00),-85(GCTTATATAAAG,-,0.00)
mm_133600.1	chr16	91465079	91465279	+	1	NA	NA	NA	75	NR_077219	100503120	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.080000	0.621891	
mm_147478.1	chr18	47247796	47247996	-	1	NA	NA	NA	120972	NM_018744	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.015000	0.378109	
mm_44880.1	chr5	34636974	34637174	-	1	NA	NA	NA	40	NM_026660	68294	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	0.065000	0.606965	
mm_167975.1	chrX	157711487	157711687	+	1	NA	NA	NA	12614	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.010000	0.373134	
mm_146470.1	chr18	88587371	88587571	+	1	NA	NA	NA	306736	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.010000	0.522388	
mm_89851.1	chr10	107271739	107271939	+	1	NA	NA	NA	8	NM_001033223	108030	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding	0.050000	0.601990	
mm_127182.1	chr15	98983846	98984046	+	1	NA	NA	NA	-2019	NR_045991	75951	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.025000	0.477612	
mm_133474.1	chr16	89306832	89307032	+	1	NA	NA	NA	96842	NM_028621	170656	Mm.46109	NM_028621	ENSMUSG00000058368	Krtap21-1	1110017B05Rik|AI506979|KAP21.1|Krtap16-7	keratin associated protein 21-1	protein-coding	0.010000	0.417910	-36(CCTTATATATAA,+,0.00),-32(ATATATAAAAGG,-,0.00)
mm_172394.1	chr7	140890989	140891189	+	1	NA	NA	NA	8695	NM_011875	23997	Mm.29760	NM_011875	ENSMUSG00000025487	Psmd13	S11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	protein-coding	0.010000	0.412935	
mm_84989.1	chr9	86571024	86571224	-	1	NA	NA	NA	718	NM_001163746	109785	Mm.390201	NM_028352	ENSMUSG00000056131	Pgm3	2810473H05Rik|Agm1|BB187688|C77933|PAGM|Pgm-3	phosphoglucomutase 3	protein-coding	0.025000	0.512438	
mm_36148.1	chr4	59475811	59476011	-	1	NA	NA	NA	-37278	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.000000	0.248756	
mm_76311.1	chr8	84661448	84661648	-	1	NA	NA	NA	1304	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.060000	0.577114	
mm_61134.1	chr7	55962436	55962636	+	1	NA	NA	NA	5	NR_015495	320845	Mm.274484	NM_001033396		A230056P14Rik	OTTMUSG00000027345	RIKEN cDNA A230056P14 gene	ncRNA	0.085000	0.601990	
mm_109718.1	chr12	116055248	116055448	+	1	NA	NA	NA	7624	NM_019565	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0.010000	0.388060	
mm_156325.1	chrX	137708908	137709108	+	1	NA	NA	NA	138254	NM_030688	60367	Mm.328321	NM_030688	ENSMUSG00000059203	Il1rapl2	-	interleukin 1 receptor accessory protein-like 2	protein-coding	0.000000	0.368159	
mm_159657.1	chr4	148643193	148643393	+	1	NA	NA	NA	-24	NM_001085505	230909	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	0.000000	0.572139	
mm_155650.1	chrX	85776915	85777115	+	1	NA	NA	NA	-196	NM_001294138	14933	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	0.065000	0.646766	
mm_105836.1	chr11	113649971	113650171	-	1	NA	NA	NA	542	NM_013581	16834	Mm.261620	NM_013581	ENSMUSG00000018661	Cog1	6030445I15|Ldlb|mKIAA1381	component of oligomeric golgi complex 1	protein-coding	0.105000	0.651741	
mm_90929.1	chr10	12868081	12868281	-	1	NA	NA	NA	-6446	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.045000	0.641791	
mm_35411.1	chr4	34806228	34806428	-	1	NA	NA	NA	-27962	NM_025471	66291	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	0.015000	0.417910	
mm_39677.1	chr5	25529908	25530108	+	1	NA	NA	NA	-10	NR_027388	73571	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0.130000	0.781095	
mm_110354.1	chr12	39974935	39975135	-	1	NA	NA	NA	62341	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.010000	0.477612	
mm_153519.1	chr19	41743553	41743753	-	1	NA	NA	NA	203	NM_015748	20562	Mm.39155	NM_015748	ENSMUSG00000025020	Slit1	Slil1|mKIAA0813	slit homolog 1 (Drosophila)	protein-coding	0.100000	0.666667	
mm_158308.1	chrX	124109697	124109897	-	1	NA	NA	NA	26113	NM_001100616	100038941	Mm.388852	NM_001100616	ENSMUSG00000072049	Vmn2r121	EG625699	vomeronasal 2, receptor 121	protein-coding	0.005000	0.328358	
mm_94782.1	chr11	21601043	21601243	+	1	NA	NA	NA	28862	NM_145425	216560	Mm.138090	NM_145425	ENSMUSG00000020319	Wdpcp	AV249152	WD repeat containing planar cell polarity effector	protein-coding	0.005000	0.497512	-34(GCTTTAATATCC,+,0.00)
mm_17672.1	chr2	32236257	32236457	-	1	NA	NA	NA	-326	NM_145145	99011	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0.070000	0.542289	
mm_75916.1	chr8	71463540	71463740	-	1	NA	NA	NA	17	NM_022419	64296	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	0.105000	0.691542	
mm_126475.1	chr15	81522265	81522465	+	1	NA	NA	NA	56049	NM_019712	56438	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.040000	0.621891	
mm_150716.1	chr19	43468282	43468482	+	1	NA	NA	NA	27946	NM_031396	83674	Mm.329864	NM_031396	ENSMUSG00000025189	Cnnm1	AI846314|Acdp1|CLP-1	cyclin M1	protein-coding	0.025000	0.537313	
mm_54297.1	chr6	29380419	29380619	-	1	NA	NA	NA	-6	NM_007538	12057	Mm.56987	NM_007538	ENSMUSG00000058831	Opn1sw	AW551857|Bcp	opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)	protein-coding	0.015000	0.467662	11(TCTTTAAAGGAG,+,0.00),56(GTCTATAAGAGG,-,0.00)
mm_139508.1	chr17	56304247	56304447	+	1	NA	NA	NA	34	NM_001111080	18140	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	0.085000	0.711443	-35(GGGTCTTTAAAG,-,0.00),-34(GGTCTTTAAAGC,-,0.00),-33(GTCTTTAAAGCG,+,0.00),-32(TCTTTAAAGCGC,+,0.00)
mm_100291.1	chr11	117813661	117813861	+	1	NA	NA	NA	4094	NM_009304	20973	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0.025000	0.537313	
mm_147720.1	chr18	60822887	60823087	-	1	NA	NA	NA	10911	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.015000	0.512438	
mm_77162.1	chr8	111688392	111688592	-	1	NA	NA	NA	1182	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.015000	0.467662	
mm_21656.1	chr2	164372647	164372847	-	1	NA	NA	NA	-16240	NM_011414	20568	Mm.371583	NM_011414	ENSMUSG00000017002	Slpi	-	secretory leukocyte peptidase inhibitor	protein-coding	0.005000	0.497512	
mm_101390.1	chr11	24385933	24386133	-	1	NA	NA	NA	-95876	NR_045857	71316	Mm.79162	NR_045857	ENSMUSG00000086892	4933430M04Rik	-	RIKEN cDNA 4933430M04 gene	ncRNA	0.000000	0.447761	
mm_108865.1	chr12	98950008	98950208	+	1	NA	NA	NA	29496	NM_198311	76260	Mm.282660	NM_029553	ENSMUSG00000021013	Ttc8	0610012F22Rik|AV001447|BBS8	tetratricopeptide repeat domain 8	protein-coding	0.005000	0.527363	
mm_102625.1	chr11	62537151	62537351	-	1	NA	NA	NA	2010	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.010000	0.343284	
mm_52063.1	chr6	97431403	97431603	+	1	NA	NA	NA	27783	NM_001346639	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.020000	0.572139	
mm_132646.1	chr16	41020039	41020239	+	1	NA	NA	NA	-512687	NM_001347236	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.005000	0.323383	18(TCCCATATAAAC,-,0.00),20(CCATATAAACAG,+,0.00)
mm_2828.1	chr1	131153124	131153324	+	1	NA	NA	NA	17	NM_010709	16865	Mm.276294	NM_010709	ENSMUSG00000026427	Eif2d	D1Ertd5e|Lgtn	eukaryotic translation initiation factor 2D	protein-coding	0.075000	0.661692	
mm_166105.1	chr4	146904864	146905064	-	1	NA	NA	NA	-116886	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.005000	0.487562	
mm_62145.1	chr7	97101526	97101726	+	1	NA	NA	NA	19875	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.005000	0.407960	
mm_1592.1	chr1	74352358	74352558	+	1	NA	NA	NA	-9650	NM_001033345	241112	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0.005000	0.547264	
mm_88502.1	chr10	77852713	77852913	+	1	NA	NA	NA	-46	NM_001162944	622629	Mm.426393	NM_001162944		Gm10318	EG622629|ENSMUSG00000071195	predicted gene 10318	protein-coding	0.035000	0.582090	-34(GGGTATAAAAGC,-,0.00)
mm_27962.1	chr3	80688041	80688241	-	1	NA	NA	NA	114650	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.005000	0.253731	12(GCTTTTAAATAA,+,0.00)
mm_57340.1	chr6	124746850	124747050	-	1	NA	NA	NA	-5871	NM_013535	14790	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.005000	0.577114	
mm_134588.1	chr16	20426204	20426404	-	1	NA	NA	NA	90	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.085000	0.592040	-29(CGCTATAAAGGC,-,0.00)
mm_2102.1	chr1	87803802	87804002	+	1	NA	NA	NA	222	NM_009118	20215	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	0.020000	0.587065	-100(GTTTTTAGACAC,+,0.00)
mm_133421.1	chr16	86816812	86817012	+	1	NA	NA	NA	-537273	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0.005000	0.427861	
mm_56278.1	chr6	91116747	91116947	-	1	NA	NA	NA	-21	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.155000	0.776119	
mm_123448.1	chr14	65174829	65175029	-	1	NA	NA	NA	-76823	NM_018788	54616	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.030000	0.502488	
mm_149731.1	chr19	21851324	21851524	+	1	NA	NA	NA	73084	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.000000	0.253731	
mm_167696.1	chr9	88522972	88523172	+	1	NA	NA	NA	-175	NR_040721	72655	Mm.21798	NR_040721	ENSMUSG00000097195	Snhg5	2810026P18Rik|4933428I09Rik|mU50HG-b	small nucleolar RNA host gene 5	ncRNA	0.145000	0.686567	
mm_132007.1	chr16	25801950	25802150	+	1	NA	NA	NA	134	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.015000	0.482587	
mm_50825.1	chr6	54595182	54595382	+	1	NA	NA	NA	171	NM_001164361	231999	Mm.35416	NM_001001335	ENSMUSG00000005225	Plekha8	6330400G01|AA517676|BC052360|Fapp-2|Fapp2	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 8	protein-coding	0.130000	0.791045	
mm_70940.1	chr8	26082514	26082714	+	1	NA	NA	NA	5	NR_110583	76604	Mm.437190	NR_110583	ENSMUSG00000085437	1700047A11Rik	4930554C15Rik	RIKEN cDNA 1700047A11 gene	ncRNA	0.010000	0.417910	
mm_90345.1	chr10	127149276	127149476	+	1	NA	NA	NA	-15780	NR_045166	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.005000	0.487562	-34(GGGTATTTAAGA,-,0.00)
mm_36970.1	chr4	109476333	109476533	-	1	NA	NA	NA	72	NM_013876	29864	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0.140000	0.830846	
mm_23998.1	chr3	86551670	86551870	+	1	NA	NA	NA	-3487	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.015000	0.343284	15(GGATATTTAAGG,-,0.00)
mm_36113.1	chr4	58885387	58885587	-	1	NA	NA	NA	27238	NM_172381	230249	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|mKIAA0368	expressed sequence AI314180	protein-coding	0.015000	0.363184	-76(GGCTATAAAAAT,-,0.00)
mm_44951.1	chr5	36586144	36586344	-	1	NA	NA	NA	-18	NM_001113362	100855	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.015000	0.522388	
mm_80124.1	chr9	70579224	70579424	+	1	NA	NA	NA	36454	NM_025690	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.020000	0.467662	
mm_72738.1	chr8	85085317	85085517	+	1	NA	NA	NA	2148	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.040000	0.542289	
mm_66353.1	chr7	43527445	43527645	-	1	NA	NA	NA	5626	NM_001111058	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.005000	0.467662	
mm_156890.1	chrX	166510103	166510303	+	1	NA	NA	NA	275	NM_001007577	245695	Mm.336318	NM_001007577	ENSMUSG00000051224	Tceanc	A630018P17Rik|Gm390	transcription elongation factor A (SII) N-terminal and central domain containing	protein-coding	0.065000	0.631841	
mm_65740.1	chr7	28436140	28436340	-	1	NA	NA	NA	-49	NM_175021	233033	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0.200000	0.850746	
mm_90.1	chr1	7089094	7089294	+	1	NA	NA	NA	274	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.110000	0.681592	
mm_21563.1	chr2	164182648	164182848	-	1	NA	NA	NA	-6	NM_145369	209232	Mm.218273	NM_145369	ENSMUSG00000040154	Wfdc5	BC019734|Prg5|Wap1	WAP four-disulfide core domain 5	protein-coding	0.010000	0.562189	
mm_157398.1	chrX	38420802	38421002	-	1	NA	NA	NA	35558	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.005000	0.388060	
mm_120898.1	chr14	75846045	75846245	+	1	NA	NA	NA	889	NM_009429	22070	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	0.035000	0.378109	
mm_120032.1	chr14	55854066	55854266	+	1	NA	NA	NA	51	NM_001040072	277154	Mm.319347	NM_001040072	ENSMUSG00000075592	Nynrin	AA409373|C80530|mKIAA1305	NYN domain and retroviral integrase containing	protein-coding	0.070000	0.696517	
mm_35620.1	chr4	43452501	43452701	-	1	NA	NA	NA	2025	NM_001110320	12517	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.015000	0.577114	
mm_32532.1	chr4	109000556	109000756	+	1	NA	NA	NA	1	NM_001346554	230598	Mm.274950	NM_146150	ENSMUSG00000053510	Nrd1	2600011I06Rik|AI875733|NRD-C|Nrdc	nardilysin, N-arginine dibasic convertase, NRD convertase 1	protein-coding	0.090000	0.646766	
mm_102014.1	chr11	51606793	51606993	-	1	NA	NA	NA	-12	NM_010448	15384	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.095000	0.567164	
mm_127457.1	chr15	101271706	101271906	+	1	NA	NA	NA	4960	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.045000	0.606965	
mm_127177.1	chr15	98953657	98953857	+	1	NA	NA	NA	-256	NM_011653	22142	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	0.030000	0.527363	
mm_139113.1	chr17	47385326	47385526	+	1	NA	NA	NA	33	NM_146079	107477	Mm.59151	NM_146079	ENSMUSG00000023979	Guca1b	BC018258|GCAP2	guanylate cyclase activator 1B	protein-coding	0.035000	0.611940	48(CTTTCTAAAAGC,-,0.00)
mm_154061.1	chr19	55127152	55127352	-	1	NA	NA	NA	-27805	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.025000	0.532338	
mm_66546.1	chr7	45210341	45210541	-	1	NA	NA	NA	1442	NM_015789	50722	Mm.27287	NM_015789	ENSMUSG00000030792	Dkkl1	AI414495|SGY|SGY-1|SGY1|Soggy|mSgy	dickkopf-like 1	protein-coding	0.020000	0.557214	
mm_144660.1	chr18	34313094	34313294	+	1	NA	NA	NA	-17951	NM_025527	66384	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	0.010000	0.402985	
mm_103831.1	chr11	83020125	83020325	-	1	NA	NA	NA	497	NM_001167743	276950	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0.020000	0.452736	
mm_125586.1	chr15	59618190	59618390	+	1	NA	NA	NA	-30364	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.035000	0.542289	
mm_30651.1	chr4	8842279	8842479	+	1	NA	NA	NA	151973	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.010000	0.348259	
mm_4707.1	chr1	180904662	180904862	+	1	NA	NA	NA	488	NM_133705	69051	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	0.025000	0.547264	
mm_48477.1	chr5	141000474	141000674	-	1	NA	NA	NA	22	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.020000	0.592040	
mm_165424.1	chr2	151974132	151974332	-	1	NA	NA	NA	-251	NM_028666	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.030000	0.527363	
mm_98858.1	chr11	97683009	97683209	+	1	NA	NA	NA	-2843	NM_001085500	217149	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	0.010000	0.338308	
mm_99805.1	chr11	107995308	107995508	+	1	NA	NA	NA	-1440	NR_106082	102465705		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0.010000	0.388060	
mm_55666.1	chr6	72520537	72520737	-	1	NA	NA	NA	-23754	NM_007599	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.005000	0.557214	
mm_96040.1	chr11	59556394	59556594	+	1	NA	NA	NA	13808	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.005000	0.417910	
mm_102819.1	chr11	69008350	69008550	-	1	NA	NA	NA	10	NM_001159519	237823	Mm.340288	NM_001159519	ENSMUSG00000020899	Pfas	4432409B16Rik|FGAMS|FGAR-AT|FGARAT|Gm18|PURL|Sofa	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)	protein-coding	0.115000	0.651741	
mm_58236.1	chr6	145047414	145047614	-	1	NA	NA	NA	1298	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.025000	0.582090	
mm_137220.1	chr17	24171464	24171664	+	1	NA	NA	NA	-2135	NM_009729	11984	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0.005000	0.497512	
mm_103138.1	chr11	70238280	70238480	-	1	NA	NA	NA	-466	NM_145758	104457	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	0.060000	0.557214	85(CTCTATTTAAAG,-,0.00),87(CTATTTAAAGAC,+,0.00)
mm_60277.1	chr7	43950531	43950731	+	1	NA	NA	NA	-35	NM_008457	16624	Mm.435488	NM_008457	ENSMUSG00000063089	Klk1b8	Klk8|Nrpn|TADG14|kallikrein|mGK-8	kallikrein 1-related peptidase b8	protein-coding	0.000000	0.542289	-14(GGGTTTTTAAAG,-,0.00),-12(GTTTTTAAAGTC,+,0.00)
mm_120329.1	chr14	63317622	63317822	+	1	NA	NA	NA	-72451	NM_001310610	14463	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0.015000	0.457711	
mm_91101.1	chr10	19065203	19065403	-	1	NA	NA	NA	-49893	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.010000	0.412935	-32(TTTTATAAAGAG,+,0.00),4(GCCTTGATAAGG,-,0.00)
mm_107349.1	chr12	32820362	32820562	+	1	NA	NA	NA	127	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.145000	0.746269	
mm_42475.1	chr5	115466056	115466256	+	1	NA	NA	NA	-110	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.015000	0.507463	81(ATGTATAAAAGA,-,0.00)
mm_22103.1	chr2	169686790	169686990	-	1	NA	NA	NA	53244	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.045000	0.492537	
mm_24018.1	chr3	87525557	87525757	+	1	NA	NA	NA	79	NM_012051	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.145000	0.731343	
mm_68008.1	chr7	100938938	100939138	-	1	NA	NA	NA	-6877	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.070000	0.626866	
mm_111528.1	chr12	100239446	100239646	-	1	NA	NA	NA	-37063	NR_045741	100038713	Mm.470751	NR_045741		Gm10432	ENSMUSG00000072882	predicted gene 10432	ncRNA	0.020000	0.527363	
mm_90227.1	chr10	121316673	121316873	+	1	NA	NA	NA	-5584	NM_029057	74694	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik	TBC1 domain family, member 30	protein-coding	0.015000	0.407960	-99(CCTTTAAGACAA,+,0.00),69(GATTTTAAAAGA,-,0.00)
mm_19124.1	chr2	80128918	80129118	-	1	NA	NA	NA	-47	NM_016744	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.025000	0.517413	
mm_4499.1	chr1	173673606	173673806	+	1	NA	NA	NA	26	NM_001162938	100033459	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|Pydc3|Pyr-rv1	interferon activated gene 208	protein-coding	0.005000	0.447761	
mm_129250.1	chr15	76669716	76669916	-	1	NA	NA	NA	132	NM_007989	14106	Mm.42011	NM_007989	ENSMUSG00000033837	Foxh1	Fast1|Fast2|fast-1|fast-2	forkhead box H1	protein-coding	0.035000	0.616915	
mm_165403.1	chr2	137528252	137528452	+	1	NA	NA	NA	-411832	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.005000	0.417910	10(CTTTTTATGGTG,+,0.00)
mm_159135.1	chr2	76686972	76687172	+	1	NA	NA	NA	11757	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.025000	0.492537	
mm_37692.1	chr4	129248323	129248523	-	1	NA	NA	NA	20	NM_001033189	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.185000	0.850746	
mm_170950.1	chr2	53191189	53191389	-	1	NA	NA	NA	-102	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.090000	0.651741	
mm_167014.1	chr7	63127031	63127231	+	1	NA	NA	NA	85395	NM_007390	11441	Mm.113464	NM_007390	ENSMUSG00000030525	Chrna7	Acra7|alpha7|nAchR	cholinergic receptor, nicotinic, alpha polypeptide 7	protein-coding	0.000000	0.467662	
mm_164582.1	chr17	25736127	25736327	+	1	NA	NA	NA	187	NM_177822	328783	Mm.183275	NM_177822	ENSMUSG00000041062	Mslnl	4732467B22	mesothelin-like	protein-coding	0.015000	0.527363	
mm_27281.1	chr3	41493090	41493290	-	1	NA	NA	NA	9	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.025000	0.537313	
mm_166535.1	chr6	30639893	30640093	+	1	NA	NA	NA	775	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.035000	0.606965	
mm_124058.1	chr14	77904299	77904499	-	1	NA	NA	NA	160	NM_029495	108670	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.040000	0.552239	
mm_42399.1	chr5	114942120	114942320	+	1	NA	NA	NA	18	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.065000	0.616915	
mm_51486.1	chr6	83054631	83054831	+	1	NA	NA	NA	-160	NM_019752	64704	Mm.21880	NM_019752	ENSMUSG00000068329	Htra2	AI481710|Omi|Prss25|mnd2	HtrA serine peptidase 2	protein-coding	0.105000	0.721393	
mm_153914.1	chr19	47205636	47205836	-	1	NA	NA	NA	-23107	NM_001163480	18011	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.010000	0.487562	
mm_144296.1	chr18	12256094	12256294	+	1	NA	NA	NA	-19808	NM_008720	18145	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	Niemann-Pick type C1	protein-coding	0.005000	0.537313	
mm_135675.1	chr16	52419815	52420015	-	1	NA	NA	NA	33166	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.318408	
mm_115931.1	chr13	23574114	23574314	-	1	NA	NA	NA	-24	NM_178195	319180		NM_178195	ENSMUSG00000069268	Hist1h2bf	-	histone cluster 1, H2bf	protein-coding	0.035000	0.512438	
mm_90254.1	chr10	122198672	122198872	+	1	NA	NA	NA	79075	NR_027637	100043513	Mm.429141	NR_027637		Gm4489	Gm241	predicted gene 4489	ncRNA	0.005000	0.427861	
mm_126441.1	chr15	80671563	80671763	+	1	NA	NA	NA	-184	NM_145986	213956	Mm.132439	NM_145986	ENSMUSG00000022408	Fam83f	AW544981	family with sequence similarity 83, member F	protein-coding	0.115000	0.726368	
mm_45459.1	chr5	67784118	67784318	-	1	NA	NA	NA	63213	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.005000	0.268657	
mm_13037.1	chr2	91081285	91081485	+	1	NA	NA	NA	-11070	NM_001290765	68427	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.020000	0.537313	
mm_43103.1	chr5	124483381	124483581	+	1	NA	NA	NA	326	NM_029532	76167	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.065000	0.686567	
mm_133478.1	chr16	89826035	89826235	+	1	NA	NA	NA	-7783	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.020000	0.502488	
mm_3786.1	chr1	156838847	156839047	+	1	NA	NA	NA	-76	NM_028333	72713	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	0.020000	0.512438	
mm_41666.1	chr5	99336664	99336864	+	1	NA	NA	NA	-83837	NM_145839	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.030000	0.472637	
mm_168381.1	chr11	23256111	23256311	+	1	NA	NA	NA	170	NM_134014	103573	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.085000	0.716418	
mm_148010.1	chr18	68230987	68231187	-	1	NA	NA	NA	29886	NR_106078	102465702		NR_106078	ENSMUSG00000098253	Mir7219	Gm27613|mmu-mir-7219	microRNA 7219	ncRNA	0.025000	0.467662	
mm_86152.1	chr9	117588574	117588774	-	1	NA	NA	NA	41239	NM_001172121	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.000000	0.407960	
mm_43512.1	chr5	137046060	137046260	+	1	NA	NA	NA	-100	NM_007457	11769	Mm.833	NM_007457	ENSMUSG00000004849	Ap1s1	AP19	adaptor protein complex AP-1, sigma 1	protein-coding	0.085000	0.646766	
mm_6836.1	chr1	84230449	84230649	-	1	NA	NA	NA	-11588	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.452736	
mm_28444.1	chr3	90509381	90509581	-	1	NA	NA	NA	17	NM_001293776	66511	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	0.100000	0.651741	
mm_133632.1	chr16	91651662	91651862	+	1	NA	NA	NA	3938	NM_178880	20658	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	0.020000	0.457711	
mm_142371.1	chr17	44654345	44654545	-	1	NA	NA	NA	81731	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.000000	0.348259	
mm_35668.1	chr4	43562388	43562588	-	1	NA	NA	NA	95	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.065000	0.547264	51(GCGTTTAAAAGG,-,0.00)
mm_165924.1	chr4	63213931	63214131	+	1	NA	NA	NA	-1381	NM_025685	373864	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0.080000	0.646766	30(CGATTTAAAAGG,-,0.00)
mm_144154.1	chr18	5593249	5593449	+	1	NA	NA	NA	-912	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	0.070000	0.601990	-34(GGCTATATAAGG,-,0.00)
mm_85309.1	chr9	101034798	101034998	-	1	NA	NA	NA	-14	NM_025835	66904	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0.090000	0.562189	
mm_137922.1	chr17	32492084	32492284	+	1	NA	NA	NA	-14278	NM_001101445	208285	Mm.311422	NM_001101445	ENSMUSG00000091586	Cyp4f17	EG208285	cytochrome P450, family 4, subfamily f, polypeptide 17	protein-coding	0.025000	0.447761	
mm_117133.1	chr13	60939311	60939511	-	1	NA	NA	NA	2524	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding	0.000000	0.388060	
mm_173118.1	chrX	161546651	161546851	-	1	NA	NA	NA	-170285	NM_001103367	24004	Mm.328503	NM_198409	ENSMUSG00000043518	Rai2	3f8	retinoic acid induced 2	protein-coding	0.010000	0.502488	
mm_143598.1	chr17	75518308	75518508	-	1	NA	NA	NA	33538	NM_133747	72722	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0.020000	0.432836	
mm_149852.1	chr19	25075498	25075698	+	1	NA	NA	NA	76069	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.005000	0.402985	
mm_166274.1	chr5	90490718	90490918	+	1	NA	NA	NA	104	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.030000	0.472637	
mm_76946.1	chr8	105979308	105979508	-	1	NA	NA	NA	11	NM_027960	71854	Mm.173395	NM_027960	ENSMUSG00000031898	Dpep3	1700018F16Rik|AI507039|MBD-3|MLZ-136	dipeptidase 3	protein-coding	0.060000	0.606965	
mm_43185.1	chr5	128600708	128600908	+	1	NA	NA	NA	-121	NR_015517	319616	Mm.387738	NR_015517	ENSMUSG00000072591	5930412G12Rik	-	RIKEN cDNA 5930412G12 gene	ncRNA	0.070000	0.616915	
mm_156185.1	chrX	133908324	133908524	+	1	NA	NA	NA	-1	NM_026838	68792	Mm.263553	NM_026838	ENSMUSG00000031253	Srpx2	1110039C07Rik|SRP|SRPUL	sushi-repeat-containing protein, X-linked 2	protein-coding	0.005000	0.512438	
mm_78576.1	chr9	36767787	36767987	+	1	NA	NA	NA	-309	NM_008408	16430	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	0.100000	0.577114	
mm_13740.1	chr2	118118153	118118353	+	1	NA	NA	NA	6377	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.030000	0.587065	
mm_8098.1	chr1	135847970	135848170	-	1	NA	NA	NA	7209	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.030000	0.562189	
mm_164316.1	chr15	103899442	103899642	-	1	NA	NA	NA	-230	NM_009267	20770	Mm.1280	NM_009267	ENSMUSG00000036925	Mucl2	Spt-1|Spt1	mucin-like 2	protein-coding	0.005000	0.393035	
mm_96495.1	chr11	67975434	67975634	+	1	NA	NA	NA	9051	NM_018768	55943	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	0.005000	0.368159	
mm_22343.1	chr2	180889609	180889809	-	1	NA	NA	NA	-4331	NR_029538	723951		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA	0.025000	0.606965	
mm_63093.1	chr7	122366070	122366270	+	1	NA	NA	NA	77045	NM_008855	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.020000	0.467662	
mm_6862.1	chr1	84278261	84278461	-	1	NA	NA	NA	6284	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.005000	0.388060	
mm_164825.1	chr18	36719857	36720057	-	1	NA	NA	NA	6858	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.000000	0.358209	
mm_22766.1	chr3	20062553	20062753	+	1	NA	NA	NA	4362	NR_105047	20585	Mm.209650	NM_009210	ENSMUSG00000002428	Hltf	AF010600|BC057116|P113|Smarca3|Snf2l3	helicase-like transcription factor	protein-coding	0.000000	0.398010	
mm_56995.1	chr6	120971318	120971518	-	1	NA	NA	NA	12574	NR_138099	215458	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	0.005000	0.477612	
mm_145455.1	chr18	60229589	60229789	+	1	NA	NA	NA	17612	NM_001033767	240327	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.000000	0.537313	
mm_115984.1	chr13	24281151	24281351	-	1	NA	NA	NA	-461	NM_026825	68732	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0.130000	0.756219	
mm_75024.1	chr8	31918260	31918460	-	1	NA	NA	NA	-157	NM_178591	211323	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding	0.015000	0.358209	
mm_73837.1	chr8	117460980	117461180	+	1	NA	NA	NA	1815	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.025000	0.402985	
mm_65008.1	chr7	17060804	17061004	-	1	NA	NA	NA	1523	NM_001162950	53417	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0.035000	0.641791	
mm_77777.1	chr9	3018670	3018870	+	1	NA	NA	NA	19973	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.015000	0.353234	
mm_88943.1	chr10	81321117	81321317	+	1	NA	NA	NA	114	NM_027381	70312	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.135000	0.686567	
mm_63378.1	chr7	127212566	127212766	+	1	NA	NA	NA	1058	NM_016754	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.030000	0.562189	
mm_142162.1	chr17	36145611	36145811	-	1	NA	NA	NA	693	NR_033517	675325	Mm.75890	NR_033517	ENSMUSG00000038311	2410017I17Rik	-	RIKEN cDNA 2410017I17 gene	ncRNA	0.125000	0.726368	
mm_124911.1	chr15	11064681	11064881	+	1	NA	NA	NA	8	NM_175501	239337	Mm.224825	NM_175501	ENSMUSG00000047497	Adamts12	ADAMTS-12|AI605170	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12	protein-coding	0.015000	0.577114	
mm_21501.1	chr2	163472552	163472752	-	1	NA	NA	NA	-23	NM_173397	228859	Mm.242917	NM_173397	ENSMUSG00000048486	Fitm2	AI414861|D930001I22Rik|Fit2	fat storage-inducing transmembrane protein 2	protein-coding	0.080000	0.666667	
mm_21812.1	chr2	165234570	165234770	-	1	NA	NA	NA	67	NM_174988	104010	Mm.151819	NM_174988	ENSMUSG00000053166	Cdh22	-	cadherin 22	protein-coding	0.110000	0.706468	
mm_129657.1	chr15	81066915	81067115	-	1	NA	NA	NA	38032	NM_153049	223701	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.010000	0.487562	
mm_86942.1	chr10	24595956	24596156	+	1	NA	NA	NA	614	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.065000	0.641791	
mm_28929.1	chr3	98859661	98859861	-	1	NA	NA	NA	33	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.010000	0.432836	
mm_120314.1	chr14	63142582	63142782	+	1	NA	NA	NA	20220	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.025000	0.557214	
mm_8670.1	chr1	156669580	156669780	-	1	NA	NA	NA	4659	NM_023141	30935	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.025000	0.562189	
mm_34519.1	chr4	148941082	148941282	+	1	NA	NA	NA	136790	NM_027195	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.045000	0.606965	
mm_120492.1	chr14	65979750	65979950	+	1	NA	NA	NA	11367	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.030000	0.542289	
mm_150532.1	chr19	39291000	39291200	+	1	NA	NA	NA	4015	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.020000	0.422886	
mm_121208.1	chr14	103053544	103053744	+	1	NA	NA	NA	6632	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.427861	
mm_3072.1	chr1	134193339	134193539	+	1	NA	NA	NA	-9	NM_016749	53311	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	0.000000	0.577114	-33(GCCTTTATAAGC,+,0.00),-33(GCCTTTATAAGC,-,0.00)
mm_133239.1	chr16	77074762	77074962	+	1	NA	NA	NA	60793	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.020000	0.378109	
mm_43066.1	chr5	124439841	124440041	+	1	NA	NA	NA	11	NM_001310725	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.080000	0.621891	
mm_5271.1	chr1	18145809	18146009	-	1	NA	NA	NA	-7	NM_001347048	78081	Mm.319913	NM_030033	ENSMUSG00000025774	Crisp4	9230112K08Rik	cysteine-rich secretory protein 4	protein-coding	0.005000	0.373134	
mm_23669.1	chr3	68572307	68572507	+	1	NA	NA	NA	39	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.065000	0.646766	
mm_95623.1	chr11	53583800	53584000	+	1	NA	NA	NA	16531	NM_001290806	16568	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	0.030000	0.492537	
mm_44950.1	chr5	36586124	36586324	-	1	NA	NA	NA	2	NM_001113362	100855	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.010000	0.537313	
mm_75814.1	chr8	70316110	70316310	-	1	NA	NA	NA	435	NM_001163282	14559	Mm.258280	NM_008107	ENSMUSG00000087408	Gdf1	AI385651|Gdf-1	growth differentiation factor 1	protein-coding	0.040000	0.606965	
mm_58381.1	chr6	149188587	149188787	-	1	NA	NA	NA	25	NM_001113424	232566	Mm.209147	NM_001113424	ENSMUSG00000068250	Amn1	5830467E07Rik|A230083D09|C730024G19Rik	antagonist of mitotic exit network 1	protein-coding	0.065000	0.597015	
mm_133955.1	chr16	4016997	4017197	-	1	NA	NA	NA	-15419	NM_177472	52864	Mm.29935	NM_177472	ENSMUSG00000039738	Slx4	AI256635|AI426760|Btbd12|D16Bwg1016e	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)	protein-coding	0.040000	0.497512	
mm_23457.1	chr3	60472549	60472749	+	1	NA	NA	NA	-181	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.388060	
mm_135579.1	chr16	50432198	50432398	-	1	NA	NA	NA	91	NM_027444	70508	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.105000	0.686567	
mm_77971.1	chr9	7793205	7793405	+	1	NA	NA	NA	8915	NR_049191	100885830		NR_049191	ENSMUSG00000093615	Mir5618	Gm23685|mmu-mir-5618	microRNA 5618	ncRNA	0.005000	0.398010	
mm_155736.1	chrX	96166372	96166572	+	1	NA	NA	NA	70427	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.015000	0.457711	
mm_77267.1	chr8	115713416	115713616	-	1	NA	NA	NA	-6622	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.020000	0.527363	
mm_87350.1	chr10	43583798	43583998	+	1	NA	NA	NA	4729	NM_009846	12484	Mm.29742	NM_009846	ENSMUSG00000047139	Cd24a	Cd24|HSA|Ly-52|nectadrin	CD24a antigen	protein-coding	0.020000	0.368159	
mm_153787.1	chr19	45816146	45816346	-	1	NA	NA	NA	-183	NM_145703	80906	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	0.045000	0.626866	-31(GCTTTTCTGGCC,+,0.00)
mm_50976.1	chr6	61350881	61351081	+	1	NA	NA	NA	-170171	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA	0.005000	0.348259	-68(GACTATATAAAA,-,0.00)
mm_21141.1	chr2	154220120	154220320	-	1	NA	NA	NA	-3522	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.010000	0.587065	
mm_81556.1	chr9	110344095	110344295	+	1	NA	NA	NA	10839	NM_001001144	235623	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0.005000	0.457711	
mm_143673.1	chr17	79981519	79981719	-	1	NA	NA	NA	80649	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.010000	0.497512	-92(CCTTCTTAAAGG,-,0.00),-91(CTTCTTAAAGGG,+,0.00)
mm_137802.1	chr17	29846433	29846633	+	1	NA	NA	NA	41349	NM_001081160	74762	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0.055000	0.562189	-22(GTTTTTAAACCA,+,0.00)
mm_49578.1	chr6	30642196	30642396	+	1	NA	NA	NA	3078	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.035000	0.527363	
mm_104822.1	chr11	99002957	99003157	-	1	NA	NA	NA	-20041	NM_178596	353155	Mm.453253	NM_178596	ENSMUSG00000047197	Gjd3	Gja11|Gjc1|cx30.2	gap junction protein, delta 3	protein-coding	0.000000	0.338308	-96(CAATTTTAAAGG,-,0.00),-72(GCTTTTATAAGG,+,0.00),-72(GCTTTTATAAGG,-,0.00)
mm_17017.1	chr2	18997949	18998149	-	1	NA	NA	NA	72	NM_008845	18718	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.125000	0.781095	
mm_170628.1	chr19	7516803	7517003	+	1	NA	NA	NA	22465	NM_146091	109168	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0.000000	0.402985	
mm_35581.1	chr4	41740934	41741134	-	1	NA	NA	NA	325	NM_001286540	18391	Mm.425181	NM_011014	ENSMUSG00000036078	Sigmar1	Oprs1|Sig1R|sigma1R	sigma non-opioid intracellular receptor 1	protein-coding	0.090000	0.646766	
mm_53275.1	chr6	128648779	128648979	+	1	NA	NA	NA	-13506	NM_053165	94071	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	0.015000	0.537313	-30(CAGCTTTAAAGG,-,0.00),-29(AGCTTTAAAGGA,-,0.00),-28(GCTTTAAAGGAT,+,0.00)
mm_8340.1	chr1	150164810	150165010	-	1	NA	NA	NA	38	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.040000	0.462687	55(GGCTTTTAATGA,-,0.00)
mm_9119.1	chr1	170211672	170211872	-	1	NA	NA	NA	3621	NM_010633	16589	Mm.209150	NM_010633	ENSMUSG00000026667	Uhmk1	4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|OTTMUSG00000021542|P-CIP2	U2AF homology motif (UHM) kinase 1	protein-coding	0.025000	0.452736	
mm_130927.1	chr15	103097686	103097886	-	1	NA	NA	NA	49042	NR_045743	432989	Mm.383979	NR_045743	ENSMUSG00000097003	D930007P13Rik	-	Riken cDNA D930007P13 gene	ncRNA	0.010000	0.348259	
mm_152611.1	chr19	11912003	11912203	-	1	NA	NA	NA	-296	NM_172635	225929	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	0.045000	0.522388	
mm_83217.1	chr9	42124059	42124259	-	1	NA	NA	NA	130	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.155000	0.771144	
mm_142918.1	chr17	53689142	53689342	-	1	NA	NA	NA	73	NM_028232	72415	Mm.153202	NM_028232	ENSMUSG00000023940	Sgol1	3300001M08Rik|C81037|Sgo1	shugoshin-like 1 (S. pombe)	protein-coding	0.150000	0.656716	
mm_70004.1	chr7	142387801	142388001	-	1	NA	NA	NA	-31	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.115000	0.686567	38(CTGCCTATAAGC,-,0.00)
mm_28045.1	chr3	84039790	84039990	-	1	NA	NA	NA	271	NM_172681	229473	Mm.28838	NM_172681	ENSMUSG00000033767	D930015E06Rik	Kiaa0922|mKIAA0922	RIKEN cDNA D930015E06 gene	protein-coding	0.095000	0.706468	-38(TCTTTTAGGGAA,+,0.00)
mm_75082.1	chr8	33916044	33916244	-	1	NA	NA	NA	13719	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.010000	0.457711	-16(CCCTTAATACAG,+,0.00)
mm_21798.1	chr2	164879670	164879870	-	1	NA	NA	NA	402	NM_146129	228866	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	0.150000	0.796020	
mm_18317.1	chr2	57108181	57108381	-	1	NA	NA	NA	6757	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.015000	0.447761	
mm_114124.1	chr13	55209709	55209909	+	1	NA	NA	NA	27	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.060000	0.552239	-62(GGCTTTAAAATG,-,0.00)
mm_8170.1	chr1	137751326	137751526	-	1	NA	NA	NA	-215029	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.015000	0.422886	89(CCTTATAAAGAT,+,0.00)
mm_25915.1	chr3	131136048	131136248	+	1	NA	NA	NA	23357	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.000000	0.333333	-6(TTTTTTAAGGAG,+,0.00)
mm_111639.1	chr12	102652546	102652746	-	1	NA	NA	NA	32374	NR_035457	100316812		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.020000	0.552239	
mm_79640.1	chr9	59557251	59557451	+	1	NA	NA	NA	17811	NM_010421	15211	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.025000	0.477612	
mm_22098.1	chr2	169081678	169081878	-	1	NA	NA	NA	103509	NR_040326	75508	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.010000	0.467662	
mm_59209.1	chr7	24530629	24530829	+	1	NA	NA	NA	81	NM_153134	210146	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	0.045000	0.522388	
mm_166442.1	chr5	137263828	137264028	-	1	NA	NA	NA	-24326	NM_009599	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.020000	0.477612	
mm_51395.1	chr6	78371098	78371298	+	1	NA	NA	NA	313	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.010000	0.497512	
mm_156891.1	chrX	166661522	166661722	+	1	NA	NA	NA	-403	NR_046015	382255	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA	0.005000	0.452736	
mm_78805.1	chr9	44066877	44067077	+	1	NA	NA	NA	-44	NM_198092	53376	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.095000	0.646766	
mm_139581.1	chr17	57105311	57105511	+	1	NA	NA	NA	26	NM_009404	21950	Mm.41171	NM_009404	ENSMUSG00000035678	Tnfsf9	4-1BB-L|4-1BBL|AI848817|Cd137l|Ly63l	tumor necrosis factor (ligand) superfamily, member 9	protein-coding	0.095000	0.661692	-30(GCCTATAAAGCA,+,0.00)
mm_160037.1	chr6	133292116	133292316	+	1	NA	NA	NA	0	NM_027784	232426	Mm.158689	NM_027784	ENSMUSG00000055594	5530400C23Rik	GRP	RIKEN cDNA 5530400C23 gene	protein-coding	0.000000	0.457711	-35(CCTTTTATAAAG,+,0.00)
mm_54717.1	chr6	40049593	40049793	-	1	NA	NA	NA	-60560	NM_001004182	434008	Mm.130209	NM_001004182	ENSMUSG00000057716	Tmem178b	EG434008|Gm5567	transmembrane protein 178B	protein-coding	0.015000	0.452736	
mm_67842.1	chr7	98539034	98539234	-	1	NA	NA	NA	44912	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.020000	0.432836	
mm_142157.1	chr17	36046466	36046666	-	1	NA	NA	NA	3605	NM_001034909	547347	Mm.484641	NM_001034909	ENSMUSG00000073407	Gm6034	EG547347|H2-gs14-2	predicted gene 6034	protein-coding	0.025000	0.502488	
mm_166767.1	chr6	134567140	134567340	-	1	NA	NA	NA	-327	NM_008514	16974	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	0.150000	0.746269	
mm_20567.1	chr2	131083269	131083469	-	1	NA	NA	NA	3396	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.010000	0.562189	
mm_84129.1	chr9	59036112	59036312	-	1	NA	NA	NA	229	NM_008684	18007	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0.175000	0.805970	
mm_20310.1	chr2	127247635	127247835	-	1	NA	NA	NA	81	NM_025296	26371	Mm.45179	NM_025296	ENSMUSG00000003662	Ciao1	AW210570|Wdr39	cytosolic iron-sulfur protein assembly 1	protein-coding	0.080000	0.567164	
mm_173282.1	chrY	1561078	1561278	+	1	NA	NA	NA	-101396	NM_148943	107868	Mm.347376	NM_148943	ENSMUSG00000069044	Usp9y	Dffry|Fafl2	ubiquitin specific peptidase 9, Y chromosome	protein-coding	0.055000	0.606965	
mm_153017.1	chr19	30674493	30674693	-	1	NA	NA	NA	-125097	NM_010051	13380	Mm.214717	NM_010051	ENSMUSG00000024868	Dkk1	mdkk-1	dickkopf WNT signaling pathway inhibitor 1	protein-coding	0.000000	0.273632	
mm_147196.1	chr18	37655748	37655948	-	1	NA	NA	NA	-6097	NM_033584	93709	Mm.247203	NM_033584	ENSMUSG00000103144	Pcdhga1	-	protocadherin gamma subfamily A, 1	protein-coding	0.050000	0.532338	63(AATTTTAAAAGG,-,0.00)
mm_57259.1	chr6	123285211	123285411	-	1	NA	NA	NA	4560	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.407960	
mm_121668.1	chr14	12346548	12346748	-	1	NA	NA	NA	-783	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	0.035000	0.477612	-33(GTTTTAATAGGA,+,0.00)
mm_104193.1	chr11	87828242	87828442	-	1	NA	NA	NA	-2228	NM_080420	76113	Mm.41236	NM_080420	ENSMUSG00000009356	Lpo	5830499B15Rik	lactoperoxidase	protein-coding	0.005000	0.472637	
mm_101745.1	chr11	43379274	43379474	-	1	NA	NA	NA	-4913	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.015000	0.447761	
mm_32252.1	chr4	102570402	102570602	+	1	NA	NA	NA	442	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.035000	0.587065	
mm_155343.1	chrX	68678480	68678680	+	1	NA	NA	NA	39	NM_001290424	14265	Mm.3451	NM_008031	ENSMUSG00000000838	Fmr1	FMRP|Fmr-1	fragile X mental retardation syndrome 1	protein-coding	0.110000	0.691542	
mm_71555.1	chr8	48632761	48632961	+	1	NA	NA	NA	41829	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.000000	0.293532	
mm_67907.1	chr7	99695748	99695948	-	1	NA	NA	NA	-39	NM_001252531	101488	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0.015000	0.562189	
mm_76936.1	chr8	105939745	105939945	-	1	NA	NA	NA	-1453	NM_013640	19171	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0.040000	0.572139	
mm_14272.1	chr2	128708960	128709160	+	1	NA	NA	NA	10063	NM_008587	17289	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.010000	0.437811	-13(CCTTTTCTGGCG,+,0.00)
mm_3173.1	chr1	135719705	135719905	+	1	NA	NA	NA	-9392	NM_007791	13007	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.030000	0.532338	
mm_65789.1	chr7	28893745	28893945	-	1	NA	NA	NA	12189	NM_001110807	60594	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	0.010000	0.631841	
mm_134307.1	chr16	15863023	15863223	-	1	NA	NA	NA	199	NM_029354	72083	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	0.035000	0.517413	
mm_118055.1	chr13	101768074	101768274	-	1	NA	NA	NA	43	NM_001077495	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.100000	0.716418	
mm_115887.1	chr13	21901015	21901215	-	1	NA	NA	NA	-4066	NR_035500	100316716		NR_035500	ENSMUSG00000088148	Mir1983	mmu-mir-1983	microRNA 1983	ncRNA	0.020000	0.482587	
mm_133174.1	chr16	72027589	72027789	+	1	NA	NA	NA	206638	NR_131116	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0.030000	0.462687	
mm_13559.1	chr2	112265614	112265814	+	1	NA	NA	NA	-600	NM_133649	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.150000	0.756219	
mm_156491.1	chrX	144336002	144336202	+	1	NA	NA	NA	18136	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.015000	0.492537	
mm_75853.1	chr8	70698222	70698422	-	1	NA	NA	NA	583	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.015000	0.582090	8(CGCCCTAAAAGC,-,0.00)
mm_15527.1	chr2	158382617	158382817	+	1	NA	NA	NA	7079	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.015000	0.328358	
mm_71547.1	chr8	47836828	47837028	+	1	NA	NA	NA	12446	NM_029383	75677	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	0.020000	0.452736	
mm_51894.1	chr6	90619051	90619251	+	1	NA	NA	NA	-95	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.020000	0.601990	
mm_129779.1	chr15	82793081	82793281	-	1	NA	NA	NA	1064	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.020000	0.542289	
mm_94095.1	chr10	128547645	128547845	-	1	NA	NA	NA	-1	NM_134003	103284	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0.090000	0.646766	
mm_78948.1	chr9	45138507	45138707	+	1	NA	NA	NA	-435	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.075000	0.631841	
mm_29560.1	chr3	116808002	116808202	-	1	NA	NA	NA	64	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.140000	0.771144	
mm_66113.1	chr7	31041989	31042189	-	1	NA	NA	NA	242	NM_008761	18301	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	0.055000	0.611940	
mm_135254.1	chr16	37654329	37654529	-	1	NA	NA	NA	-61	NM_026610	68194	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.075000	0.651741	
mm_36452.1	chr4	82499242	82499442	-	1	NA	NA	NA	6437	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.025000	0.492537	
mm_164666.1	chr17	44279810	44280010	+	1	NA	NA	NA	91338	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	0.000000	0.368159	
mm_168868.1	chr12	35047131	35047331	+	1	NA	NA	NA	42	NM_001014973	217463	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0.160000	0.726368	
mm_91096.1	chr10	19062098	19062298	-	1	NA	NA	NA	-46788	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.025000	0.507463	
mm_144286.1	chr18	12128500	12128700	+	1	NA	NA	NA	-250	NM_024182	66878	Mm.28551	NM_024182	ENSMUSG00000024404	Riok3	1200013N13Rik|D18Ertd331e|E130306C24Rik|Sudd	RIO kinase 3	protein-coding	0.045000	0.552239	
mm_43767.1	chr5	140735462	140735662	+	1	NA	NA	NA	11435	NM_173405	231842	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.070000	0.651741	
mm_16506.1	chr2	181306655	181306855	+	1	NA	NA	NA	7745	NM_009133	20262	Mm.2319	NM_009133	ENSMUSG00000027581	Stmn3	9330161A03Rik|AI604839|R75323|Sclip	stathmin-like 3	protein-coding	0.040000	0.527363	
mm_112165.1	chr12	113366421	113366621	-	1	NA	NA	NA	-123044	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.477612	
mm_134115.1	chr16	10292270	10292470	-	1	NA	NA	NA	21598	NM_007929	13731	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	0.020000	0.467662	
mm_15740.1	chr2	164237206	164237406	+	1	NA	NA	NA	1035	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.005000	0.402985	
mm_128878.1	chr15	73060136	73060336	-	1	NA	NA	NA	968	NM_001164641	76510	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.020000	0.442786	-56(CCCCTTTAAAAG,-,0.00),-55(CCCTTTAAAAGC,+,0.00),-55(CCCTTTAAAAGC,-,0.00),-54(CCTTTAAAAGCA,+,0.00)
mm_117476.1	chr13	76271846	76272046	-	1	NA	NA	NA	-113015	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.010000	0.432836	86(GGCTTTTTAAGA,-,0.00)
mm_144947.1	chr18	37806917	37807117	+	1	NA	NA	NA	607	NM_033581	93706	Mm.247203	NM_033581	ENSMUSG00000102918	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding	0.090000	0.577114	
mm_137086.1	chr17	21488921	21489121	+	1	NA	NA	NA	33	NM_013843	24132	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	0.035000	0.527363	
mm_90241.1	chr10	121396669	121396869	+	1	NA	NA	NA	31679	NM_029364	75612	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.005000	0.407960	3(CGCCTTATAAGA,-,0.00)
mm_2287.1	chr1	91366323	91366523	+	1	NA	NA	NA	-7	NM_173395	227358	Mm.389157	NM_173395	ENSMUSG00000047443	Erfe	4832406C22|Fam132b|myonectin	erythroferrone	protein-coding	0.155000	0.751244	-1(CGCGTTATAAGG,-,0.00)
mm_111757.1	chr12	103958784	103958984	-	1	NA	NA	NA	-1987	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	0.005000	0.577114	
mm_11920.1	chr2	52072240	52072440	+	1	NA	NA	NA	-497	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.020000	0.537313	
mm_102110.1	chr11	53265948	53266148	-	1	NA	NA	NA	34431	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.015000	0.398010	
mm_167012.1	chr7	60005078	60005278	-	1	NA	NA	NA	-22	NM_033174	84704	Mm.274995	NM_033174	ENSMUSG00000000948	Snurf	2410045I01Rik|Snrpn	SNRPN upstream reading frame	protein-coding	0.060000	0.587065	
mm_55063.1	chr6	49047967	49048167	-	1	NA	NA	NA	11549	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.040000	0.582090	
mm_141426.1	chr17	29437220	29437420	-	1	NA	NA	NA	-53725	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.055000	0.601990	
mm_25431.1	chr3	107895813	107896013	+	1	NA	NA	NA	59	NM_010360	14866	Mm.282351	NM_010360	ENSMUSG00000004032	Gstm5	-	glutathione S-transferase, mu 5	protein-coding	0.080000	0.601990	
mm_28276.1	chr3	88913891	88914091	-	1	NA	NA	NA	-41	NM_144898	229524	Mm.440405	NM_144898	ENSMUSG00000068922	Msto1	BC008103|mst	misato 1, mitochondrial distribution and morphology regulator	protein-coding	0.110000	0.676617	
mm_41346.1	chr5	90501333	90501533	+	1	NA	NA	NA	10719	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.010000	0.308458	
mm_23254.1	chr3	51276166	51276366	+	1	NA	NA	NA	-495	NR_073429	67746	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	0.075000	0.621891	
mm_22359.1	chr2	181029211	181029411	-	1	NA	NA	NA	9866	NM_015730	11438	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	0.035000	0.542289	
mm_89167.1	chr10	86309881	86310081	+	1	NA	NA	NA	9569	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.010000	0.402985	
mm_129255.1	chr15	76697920	76698120	-	1	NA	NA	NA	1294	NM_182805	76282	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	0.085000	0.636816	
mm_161707.1	chr17	24804253	24804453	+	1	NA	NA	NA	-29	NM_029197	75178	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	0.110000	0.716418	
mm_33021.1	chr4	121041665	121041865	+	1	NA	NA	NA	2199	NM_007741	12840	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	0.010000	0.383085	47(TTCTCTAAAAAG,-,0.00)
mm_72878.1	chr8	88697251	88697451	+	1	NA	NA	NA	323	NM_001128171	74256	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	0.115000	0.706468	
mm_70758.1	chr8	21249617	21249817	+	1	NA	NA	NA	-45	NM_001177487	100041787	Mm.437206	NM_001177487	ENSMUSG00000074441	Gm15292	ENSMUSG00000074441|OTTMUSG00000019784	predicted gene 15292	protein-coding	0.000000	0.512438	
mm_119479.1	chr14	47319488	47319688	+	1	NA	NA	NA	21274	NM_178684	218975	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	0.015000	0.353234	
mm_97479.1	chr11	78324163	78324363	+	1	NA	NA	NA	65	NM_009657	11676	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0.010000	0.562189	
mm_47384.1	chr5	122990386	122990586	-	1	NA	NA	NA	1132	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.015000	0.477612	
mm_128965.1	chr15	74832019	74832219	-	1	NA	NA	NA	9524	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.010000	0.462687	
mm_77692.1	chr8	126588583	126588783	-	1	NA	NA	NA	4753	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.005000	0.432836	
mm_89900.1	chr10	110937823	110938023	+	1	NA	NA	NA	17747	NM_007792	13008	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	0.015000	0.467662	
mm_86288.1	chr9	121914742	121914942	-	1	NA	NA	NA	1463	NM_010012	13124	Mm.20889	NM_010012	ENSMUSG00000050445	Cyp8b1	-	cytochrome P450, family 8, subfamily b, polypeptide 1	protein-coding	0.040000	0.557214	
mm_11237.1	chr2	29858158	29858358	+	1	NA	NA	NA	-11236	NM_207298	99151	Mm.296336	NM_207298	ENSMUSG00000039787	Cercam	2600006K01Rik|AL024097|Ceecam1	cerebral endothelial cell adhesion molecule	protein-coding	0.015000	0.567164	
mm_43648.1	chr5	138280246	138280446	+	1	NA	NA	NA	-163	NM_016964	50878	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	0.090000	0.631841	
mm_112542.1	chr13	11840168	11840368	+	1	NA	NA	NA	266677	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.010000	0.412935	-9(GCACATAAAAGG,-,0.00)
mm_115201.1	chr13	109116136	109116336	+	1	NA	NA	NA	-208508	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.015000	0.542289	
mm_120915.1	chr14	76414709	76414909	+	1	NA	NA	NA	-152	NM_001310646	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.065000	0.666667	
mm_166749.1	chr6	125236998	125237198	-	1	NA	NA	NA	-71	NM_001286753	21940	Mm.367714	NM_001033126	ENSMUSG00000030336	Cd27	S152|Tnfrsf7|Tp55	CD27 antigen	protein-coding	0.025000	0.537313	
mm_8654.1	chr1	156462222	156462422	-	1	NA	NA	NA	12006	NM_009230	20652	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0.000000	0.348259	
mm_132219.1	chr16	32630924	32631124	+	1	NA	NA	NA	-13619	NM_001110147	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.000000	0.358209	
mm_81877.1	chr9	119322956	119323156	+	1	NA	NA	NA	-629	NM_133985	108737	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	0.070000	0.557214	
mm_62027.1	chr7	91672339	91672539	+	1	NA	NA	NA	-389955	NM_001243046	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.015000	0.492537	
mm_153540.1	chr19	41966560	41966760	-	1	NA	NA	NA	14476	NM_028152	72199	Mm.218940	NM_028152	ENSMUSG00000025159	Mms19	2410001K24Rik|2610042O15Rik|AI316855|C79368|C86341|Mms19l	MMS19 (MET18 S. cerevisiae)	protein-coding	0.000000	0.437811	
mm_48059.1	chr5	136566269	136566469	-	1	NA	NA	NA	-388	NM_001291233	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.145000	0.791045	
mm_44544.1	chr5	24555334	24555534	-	1	NA	NA	NA	35	NR_033188	231045	Mm.255800	NM_177676	ENSMUSG00000038199	4931409K22Rik	Iqca1l|Iqca1p1	RIKEN cDNA 4931409K22 gene	protein-coding	0.015000	0.497512	73(GGCTTGAAAAGC,-,0.00)
mm_41416.1	chr5	90804050	90804250	+	1	NA	NA	NA	9616	NM_011339	20309	Mm.64326	NM_011339	ENSMUSG00000029375	Cxcl15	Il8|Scyb15|lungkine|weche	chemokine (C-X-C motif) ligand 15	protein-coding	0.000000	0.348259	
mm_81618.1	chr9	110797154	110797354	+	1	NA	NA	NA	-931	NM_153099	235628	Mm.292285	NM_153099	ENSMUSG00000044664	Prss42	Tessp2	protease, serine 42	protein-coding	0.025000	0.512438	
mm_101530.1	chr11	33162980	33163180	-	1	NA	NA	NA	126	NM_001252261	18148	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	0.100000	0.626866	
mm_89681.1	chr10	97517546	97517746	+	1	NA	NA	NA	35315	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.025000	0.388060	
mm_70748.1	chr8	19225378	19225578	+	1	NA	NA	NA	0	NM_054074	116746	Mm.358822	NM_054074	ENSMUSG00000050756	Defb6	BD-6	defensin beta 6	protein-coding	0.000000	0.457711	-34(CACTATATAAGG,-,0.00)
mm_88998.1	chr10	81575217	81575417	+	1	NA	NA	NA	30	NM_001252401	21886	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0.110000	0.781095	
mm_35769.1	chr4	46196215	46196415	-	1	NA	NA	NA	-4	NM_011728	22590	Mm.247036	NM_011728	ENSMUSG00000028329	Xpa	AI573865|Xpac	xeroderma pigmentosum, complementation group A	protein-coding	0.075000	0.597015	
mm_27122.1	chr3	31310196	31310396	-	1	NA	NA	NA	23	NM_172861	241919	Mm.285366	NM_172861	ENSMUSG00000069072	Slc7a14	A930013N06|BC061928	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	protein-coding	0.055000	0.552239	
mm_72929.1	chr8	91115622	91115822	+	1	NA	NA	NA	18305	NM_001302337	14339	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	0.030000	0.457711	
mm_118134.1	chr13	104816830	104817030	-	1	NA	NA	NA	23	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.050000	0.527363	
mm_34102.1	chr4	138983612	138983812	+	1	NA	NA	NA	10807	NM_029857	77056	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	0.010000	0.497512	
mm_162556.1	chr1	171849555	171849755	+	1	NA	NA	NA	9958	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.015000	0.462687	
mm_153008.1	chr19	30175381	30175581	-	1	NA	NA	NA	-40	NM_138595	104174	Mm.274852	NM_138595	ENSMUSG00000024827	Gldc	D030049L12Rik|D19Wsu57e	glycine decarboxylase	protein-coding	0.045000	0.606965	
mm_73020.1	chr8	94010387	94010587	+	1	NA	NA	NA	2153	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.010000	0.442786	
mm_133316.1	chr16	77651869	77652069	+	1	NA	NA	NA	5696	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0.000000	0.472637	
mm_124738.1	chr15	6580961	6581161	+	1	NA	NA	NA	1214	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.020000	0.507463	
mm_9498.1	chr1	173729964	173730164	-	1	NA	NA	NA	11745	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.000000	0.442786	
mm_143970.1	chr17	87306834	87307034	-	1	NA	NA	NA	24048	NM_028639	225049	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.035000	0.621891	
mm_92186.1	chr10	68097496	68097696	-	1	NA	NA	NA	117998	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.040000	0.547264	
mm_145041.1	chr18	39519730	39519930	+	1	NA	NA	NA	-32585	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.015000	0.492537	
mm_118933.1	chr14	27114802	27115002	+	1	NA	NA	NA	-29091	NM_001289686	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.105000	0.736318	
mm_163436.1	chr12	85455521	85455721	+	1	NA	NA	NA	-18280	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.050000	0.557214	
mm_15559.1	chr2	158502566	158502766	+	1	NA	NA	NA	54	NM_145635	246747	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	0.020000	0.562189	
mm_122513.1	chr14	47175556	47175756	-	1	NA	NA	NA	13746	NM_008102	14528	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	0.005000	0.502488	
mm_592.1	chr1	39551634	39551834	+	1	NA	NA	NA	-2894	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.000000	0.263682	
mm_51592.1	chr6	83867320	83867520	+	1	NA	NA	NA	-35679	NM_146169	232164	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	0.060000	0.651741	
mm_131024.1	chr16	3542111	3542311	+	1	NA	NA	NA	-50187	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.040000	0.422886	
mm_113607.1	chr13	41249813	41250013	+	1	NA	NA	NA	69	NM_001135577	108934	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.125000	0.726368	
mm_83645.1	chr9	49505111	49505311	-	1	NA	NA	NA	-13077	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.015000	0.398010	-63(GCCTTTAAAAAC,-,0.00),-62(CCTTTAAAAACA,+,0.00)
mm_144482.1	chr18	23954799	23954999	+	1	NA	NA	NA	211	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.105000	0.681592	
mm_127863.1	chr15	8351604	8351804	-	1	NA	NA	NA	92759	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.010000	0.457711	83(CTCCATAAAAAA,-,0.00)
mm_113204.1	chr13	25055381	25055581	+	1	NA	NA	NA	-523	NM_001195617	195208	Mm.284719	NM_177577	ENSMUSG00000035910	Dcdc2a	AW492955|Dcdc2|RU2	doublecortin domain containing 2a	protein-coding	0.070000	0.616915	
mm_169894.1	chr16	48283662	48283862	+	1	NA	NA	NA	27	NM_001018002	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding	0.015000	0.472637	
mm_116036.1	chr13	26770015	26770215	-	1	NA	NA	NA	50	NM_008232	15192	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	hepatoma derived growth factor-like 1	protein-coding	0.055000	0.601990	
mm_143910.1	chr17	85162584	85162784	-	1	NA	NA	NA	71984	NM_028576	73582	Mm.260753	NM_028576	ENSMUSG00000071037	Camkmt	1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT	calmodulin-lysine N-methyltransferase	protein-coding	0.015000	0.502488	
mm_71608.1	chr8	56305604	56305804	+	1	NA	NA	NA	11152	NM_008278	15446	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.000000	0.398010	63(TACTATATAAGA,-,0.00)
mm_160962.1	chr11	99543039	99543239	-	1	NA	NA	NA	19	NM_001039666	406221	Mm.422372	NM_001039666	ENSMUSG00000059169	Krt40	CK-40|K40	keratin 40	protein-coding	0.025000	0.562189	
mm_93200.1	chr10	94688484	94688684	-	1	NA	NA	NA	29	NR_015524	67723	Mm.116284	NR_015524	ENSMUSG00000097164	Cep83os	4932415G12Rik|Ccdc41os1	centrosomal protein 83, opposite strand	ncRNA	0.135000	0.691542	
mm_136517.1	chr16	97453923	97454123	-	1	NA	NA	NA	8882	NM_010846	17857	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.000000	0.482587	
mm_60644.1	chr7	44849888	44850088	+	1	NA	NA	NA	-19	NM_001253920	67605	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	0.065000	0.661692	
mm_161128.1	chr12	111844722	111844922	-	1	NA	NA	NA	30652	NM_026752	68520	Mm.390497	NM_026752	ENSMUSG00000021286	Zfyve21	1110013H04Rik|AW558780|C85416	zinc finger, FYVE domain containing 21	protein-coding	0.030000	0.532338	
mm_114069.1	chr13	54382444	54382644	+	1	NA	NA	NA	11195	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.020000	0.567164	
mm_162850.1	chr10	88224652	88224852	+	1	NA	NA	NA	23655	NM_027487	67282	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	0.025000	0.462687	
mm_150424.1	chr19	37434741	37434941	+	1	NA	NA	NA	0	NM_008245	15242	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0.145000	0.761194	
mm_163487.1	chr12	109453510	109453710	+	1	NA	NA	NA	155	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.110000	0.721393	
mm_9238.1	chr1	171294732	171294932	-	1	NA	NA	NA	150	NM_025388	66155	Mm.2815	NM_025388	ENSMUSG00000062963	Ufc1	1110021H02Rik|AA062310|ESTM29	ubiquitin-fold modifier conjugating enzyme 1	protein-coding	0.065000	0.502488	-32(CCGCTTTAAAGC,-,0.00),-30(GCTTTAAAGCCA,+,0.00)
mm_153499.1	chr19	41332602	41332802	-	1	NA	NA	NA	52368	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.015000	0.482587	
mm_49969.1	chr6	40768618	40768818	+	1	NA	NA	NA	118776	NM_139296	194357	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0.000000	0.432836	
mm_108361.1	chr12	80790490	80790690	+	1	NA	NA	NA	58	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.130000	0.761194	
mm_72216.1	chr8	72687102	72687302	+	1	NA	NA	NA	-36068	NM_001113248	20467	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0.015000	0.537313	
mm_77384.1	chr8	120101390	120101590	-	1	NA	NA	NA	-18	NM_133967	102193	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.105000	0.626866	
mm_146682.1	chr18	12860048	12860248	-	1	NA	NA	NA	2565	NM_001252493	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.000000	0.507463	
mm_109648.1	chr12	112855323	112855523	+	1	NA	NA	NA	5493	NM_019925	56696	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.005000	0.567164	
mm_137374.1	chr17	25579085	25579285	+	1	NA	NA	NA	11	NR_045520	76483	Mm.12787	NM_029624	ENSMUSG00000002279	Lmf1	2400010G15Rik|AW822050|Tmem112|cld	lipase maturation factor 1	protein-coding	0.095000	0.661692	
mm_169092.1	chr13	39939480	39939680	+	1	NA	NA	NA	348431	NM_172143	218165	Mm.364096	NM_172143	ENSMUSG00000047094	Ofcc1	opo	orofacial cleft 1 candidate 1	protein-coding	0.040000	0.467662	
mm_44758.1	chr5	31526620	31526820	-	1	NA	NA	NA	42	NM_028150	72195	Mm.164187	NM_028150	ENSMUSG00000053134	Supt7l	2610524B01Rik|6030455L14Rik	suppressor of Ty 7-like	protein-coding	0.040000	0.532338	
mm_120664.1	chr14	70545290	70545490	+	1	NA	NA	NA	139	NM_180588	72549	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	0.120000	0.711443	
mm_156168.1	chrX	130116073	130116273	+	1	NA	NA	NA	366431	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.010000	0.263682	
mm_155535.1	chrX	74303861	74304061	+	1	NA	NA	NA	-1051	NM_010273	14567	Mm.205830	NM_010273	ENSMUSG00000015291	Gdi1	GDIA|GDIalpha	guanosine diphosphate (GDP) dissociation inhibitor 1	protein-coding	0.010000	0.487562	
mm_153403.1	chr19	40511722	40511922	-	1	NA	NA	NA	1914	NM_178362	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.005000	0.363184	
mm_83867.1	chr9	54849966	54850166	-	1	NA	NA	NA	-13689	NM_022655	64602	Mm.208991	NM_022655	ENSMUSG00000032293	Ireb2	D9Ertd85e|Irp2	iron responsive element binding protein 2	protein-coding	0.005000	0.373134	
mm_121078.1	chr14	99046318	99046518	+	1	NA	NA	NA	41	NM_175265	77744	Mm.23503	NM_175265	ENSMUSG00000022070	Bora	6720463M24Rik|AI317232	bora, aurora kinase A activator	protein-coding	0.100000	0.671642	
mm_56967.1	chr6	120114679	120114879	-	1	NA	NA	NA	21399	NM_016718	29862	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.020000	0.422886	
mm_169393.1	chr14	43694480	43694680	+	1	NA	NA	NA	-86567	NM_001098269	100042342	Mm.429750	NM_001098269	ENSMUSG00000095528	Gm10375	ENSMUSG00000072602	predicted gene 10375	protein-coding	0.005000	0.462687	
mm_18681.1	chr2	71347737	71347937	-	1	NA	NA	NA	19717	NM_172436	78830	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.015000	0.457711	
mm_171016.1	chr2	83960609	83960809	+	1	NA	NA	NA	-19483	NM_027964	71861	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.050000	0.442786	
mm_125362.1	chr15	39434474	39434674	+	1	NA	NA	NA	-224937	NM_001256384	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.010000	0.363184	
mm_146396.1	chr18	82910568	82910768	+	1	NA	NA	NA	-211	NM_183033	329003	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.055000	0.621891	
mm_111841.1	chr12	107931209	107931409	-	1	NA	NA	NA	72105	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.030000	0.532338	-42(CTCTATTTAAAG,-,0.00),-40(CTATTTAAAGGG,+,0.00),-40(CTATTTAAAGGG,-,0.00)
mm_110096.1	chr12	25189508	25189708	-	1	NA	NA	NA	60434	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.025000	0.567164	
mm_17316.1	chr2	26445013	26445213	-	1	NA	NA	NA	103	NM_153125	227648	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	0.095000	0.691542	
mm_30271.1	chr3	146781291	146781491	-	1	NA	NA	NA	25	NM_001164200	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.015000	0.447761	
mm_100484.1	chr11	120236409	120236609	+	1	NA	NA	NA	3562	NM_198423	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.090000	0.636816	
mm_117447.1	chr13	74770548	74770748	-	1	NA	NA	NA	88	NM_001301156	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.060000	0.582090	
mm_142821.1	chr17	51756360	51756560	-	1	NA	NA	NA	55594	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.005000	0.507463	
mm_41340.1	chr5	90497187	90497387	+	1	NA	NA	NA	6573	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.010000	0.487562	
mm_23926.1	chr3	83766508	83766708	+	1	NA	NA	NA	287	NM_009144	20319	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0.090000	0.696517	
mm_53016.1	chr6	123283330	123283530	+	1	NA	NA	NA	6441	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.378109	
mm_136374.1	chr16	92825523	92825723	-	1	NA	NA	NA	451	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.035000	0.447761	
mm_86685.1	chr10	18407681	18407881	+	1	NA	NA	NA	106	NM_173390	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.040000	0.567164	
mm_52612.1	chr6	117173707	117173907	+	1	NA	NA	NA	5272	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.020000	0.437811	4(GCTTTTATAACT,+,0.00)
mm_22158.1	chr2	172901879	172902079	-	1	NA	NA	NA	38342	NM_007557	12162	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	0.005000	0.517413	-71(TCTTTAAGAGTG,+,0.00)
mm_162209.1	chrX	136033267	136033467	+	1	NA	NA	NA	0	NM_029541	76219	Mm.482965	NM_029541	ENSMUSG00000048355	Arxes1	6530401D17Rik|Spc22/23|Spcs3	adipocyte-related X-chromosome expressed sequence 1	protein-coding	0.110000	0.721393	
mm_4644.1	chr1	180199708	180199908	+	1	NA	NA	NA	-3788	NM_023341	67426	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0.010000	0.527363	
mm_106551.1	chr11	120598276	120598476	-	1	NA	NA	NA	-11	NM_011568	21681	Mm.1886	NM_011568	ENSMUSG00000025134	Alyref	ALY|REF1|Refbp1|Thoc4	Aly/REF export factor	protein-coding	0.160000	0.686567	
mm_24434.1	chr3	90541167	90541367	+	1	NA	NA	NA	44	NM_026416	67860	Mm.331185	NM_026416	ENSMUSG00000074457	S100a16	2300002L21Rik|AI325039|AI663996|DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding	0.025000	0.582090	
mm_167098.1	chr7	109798575	109798775	+	1	NA	NA	NA	-17130	NM_020610	78593	Mm.275374	NM_020610	ENSMUSG00000034825	Nrip3	A330103B05Rik|D7H11orf14|ICRFP703B1614Q5.2	nuclear receptor interacting protein 3	protein-coding	0.010000	0.407960	
mm_42871.1	chr5	122240563	122240763	+	1	NA	NA	NA	23797	NR_104441	654470	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.020000	0.532338	
mm_94812.1	chr11	23067899	23068099	+	1	NA	NA	NA	54612	NM_028672	73873	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0.085000	0.686567	
mm_51079.1	chr6	66956929	66957129	+	1	NA	NA	NA	60138	NM_001177558	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.005000	0.353234	-52(GCTTTTATATAG,+,0.00),-50(TTTTATATAGGC,+,0.00)
mm_102283.1	chr11	55399128	55399328	-	1	NA	NA	NA	20852	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.030000	0.542289	
mm_40010.1	chr5	33018795	33018995	+	1	NA	NA	NA	79	NM_011738	22629	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.190000	0.810945	
mm_96914.1	chr11	70459992	70460192	+	1	NA	NA	NA	-108	NM_023158	66102	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.055000	0.577114	
mm_159195.1	chr2	119208533	119208733	+	1	NA	NA	NA	-87	NM_001164827	72008	Mm.386807	NM_028054	ENSMUSG00000068580	Zfyve19	1500041L05Rik|ANCHR	zinc finger, FYVE domain containing 19	protein-coding	0.080000	0.606965	
mm_68052.1	chr7	101585500	101585700	-	1	NA	NA	NA	-4439	NM_019915	11872	Mm.57008	NM_019915	ENSMUSG00000030651	Art2b	ART2.2|ARTC2|Art|Ly92b|Rt-6|Rt6|Rt6-2	ADP-ribosyltransferase 2b	protein-coding	0.010000	0.412935	5(GCTTTTAGAAGA,+,0.00)
mm_63760.1	chr7	131112046	131112246	+	1	NA	NA	NA	34137	NM_173409	233918	Mm.78341	NM_173409	ENSMUSG00000013668	4933402N03Rik	4930412O05	RIKEN cDNA 4933402N03 gene	protein-coding	0.005000	0.507463	
mm_13452.1	chr2	105425881	105426081	+	1	NA	NA	NA	-26662	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0.030000	0.497512	
mm_55829.1	chr6	83124674	83124874	-	1	NA	NA	NA	255	NM_023547	70020	Mm.27814	NM_023547	ENSMUSG00000030034	Ino80b	2510009I23Rik|HMG1YL4|Hmga1l4|Papa1|Znhit4	INO80 complex subunit B	protein-coding	0.030000	0.507463	
mm_138063.1	chr17	33930788	33930988	+	1	NA	NA	NA	994	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.030000	0.562189	
mm_31507.1	chr4	53631327	53631527	+	1	NA	NA	NA	-44	NM_176966	319636	Mm.103464	NM_176966	ENSMUSG00000054752	Fsd1l	A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl|OTTMUSG00000007002	fibronectin type III and SPRY domain containing 1-like	protein-coding	0.165000	0.761194	
mm_85331.1	chr9	102354557	102354757	-	1	NA	NA	NA	36	NM_001168296	270190	Mm.22897	NM_173447	ENSMUSG00000032537	Ephb1	9330129L11|AW488255|C130099E04Rik|Cek6|ENSMUSG00000074119|Elk|Elkh|Hek6|Net	Eph receptor B1	protein-coding	0.070000	0.651741	
mm_125206.1	chr15	33221286	33221486	+	1	NA	NA	NA	138257	NM_176073	54381	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0.025000	0.447761	
mm_18510.1	chr2	62617237	62617437	-	1	NA	NA	NA	28918	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.020000	0.482587	
mm_10307.1	chr2	11172010	11172210	+	1	NA	NA	NA	-272	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.075000	0.611940	
mm_129301.1	chr15	77306951	77307151	-	1	NA	NA	NA	2	NM_001110827	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.120000	0.721393	
mm_70168.1	chr7	143627744	143627944	-	1	NA	NA	NA	1	NM_175649	244237	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	0.015000	0.497512	
mm_122517.1	chr14	47186855	47187055	-	1	NA	NA	NA	2447	NM_008102	14528	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	0.010000	0.467662	
mm_151527.1	chr19	58743983	58744183	+	1	NA	NA	NA	15196	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.010000	0.467662	
mm_157756.1	chrX	73494767	73494967	-	1	NA	NA	NA	-8219	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.000000	0.507463	
mm_75532.1	chr8	57320273	57320473	-	1	NA	NA	NA	486	NR_110474	102636514		NR_110474	ENSMUSG00000100510	Uph	-	upperhand	ncRNA	0.035000	0.537313	
mm_106780.1	chr12	4635521	4635721	+	1	NA	NA	NA	42613	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.020000	0.432836	
mm_166574.1	chr6	50247415	50247615	-	1	NA	NA	NA	14254	NM_018769	54722	Mm.248361	NM_018769	ENSMUSG00000029821	Dfna5	2310037D07Rik|4932441K13Rik|Dfna5h|EG14210|Fin15	deafness, autosomal dominant 5 (human)	protein-coding	0.005000	0.522388	
mm_91706.1	chr10	44058816	44059016	-	1	NA	NA	NA	-54070	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.025000	0.482587	-33(TCTTATAAAGCG,+,0.00)
mm_8735.1	chr1	160212517	160212717	-	1	NA	NA	NA	275	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0.135000	0.741294	
mm_7858.1	chr1	132523594	132523794	-	1	NA	NA	NA	17464	NM_029025	74626	Mm.34611	NM_029025	ENSMUSG00000048174	Tmem81	4930429O20Rik|AI465369	transmembrane protein 81	protein-coding	0.035000	0.606965	
mm_159230.1	chr2	135741706	135741906	+	1	NA	NA	NA	-24	NM_013829	18798	Mm.38009	NM_013829	ENSMUSG00000039943	Plcb4	A930039J07Rik|AI854601|C230058B11Rik	phospholipase C, beta 4	protein-coding	0.010000	0.462687	
mm_64819.1	chr7	7298644	7298844	-	1	NA	NA	NA	92	NM_001302387	12727	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2	chloride channel, voltage-sensitive 4	protein-coding	0.105000	0.681592	
mm_1089.1	chr1	59619307	59619507	+	1	NA	NA	NA	51427	NM_009460	22218	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0.035000	0.527363	
mm_3379.1	chr1	139454686	139454886	+	1	NA	NA	NA	13	NM_009791	12316	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	asp (abnormal spindle)-like, microcephaly associated (Drosophila)	protein-coding	0.065000	0.557214	
mm_147739.1	chr18	61108477	61108677	-	1	NA	NA	NA	3005	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.020000	0.606965	
mm_137620.1	chr17	28298250	28298450	+	1	NA	NA	NA	-15180	NR_028297	72775	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	0.045000	0.597015	
mm_147466.1	chr18	46713311	46713511	-	1	NA	NA	NA	14931	NM_033037	12583	Mm.241056	NM_033037	ENSMUSG00000033022	Cdo1	1300002L19Rik|Cdo|D18Ucla3	cysteine dioxygenase 1, cytosolic	protein-coding	0.015000	0.398010	
mm_104527.1	chr11	96111875	96112075	-	1	NA	NA	NA	-13	NM_001271018	76815	Mm.296049	NM_029755	ENSMUSG00000006056	Calcoco2	2410154J16Rik|C77254|Ndp52|Ndp52l1	calcium binding and coiled-coil domain 2	protein-coding	0.040000	0.592040	
mm_106824.1	chr12	7987695	7987895	+	1	NA	NA	NA	10118	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.462687	
mm_145107.1	chr18	44104558	44104758	+	1	NA	NA	NA	135	NM_030061	78242	Mm.99782	NM_030061	ENSMUSG00000061144	Spink12	9230117E20Rik	serine peptidase inhibitor, Kazal type 12	protein-coding	0.010000	0.442786	
mm_38756.1	chr4	147848292	147848492	-	1	NA	NA	NA	-17	NM_198619	242747	Mm.332053	NM_198619	ENSMUSG00000059423	Zfp933	2810408P10Rik	zinc finger protein 933	protein-coding	0.020000	0.487562	
mm_125129.1	chr15	30187862	30188062	+	1	NA	NA	NA	15369	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.010000	0.417910	
mm_80943.1	chr9	102718357	102718557	+	1	NA	NA	NA	653	NM_019764	56332	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0.085000	0.606965	
mm_124522.1	chr14	122105738	122105938	-	1	NA	NA	NA	1136	NR_015586	319727	Mm.215552	NR_015586		A330035P11Rik	-	RIKEN cDNA A330035P11 gene	ncRNA	0.025000	0.442786	
mm_82442.1	chr9	15287965	15288165	-	1	NA	NA	NA	-8198	NM_144933	234959	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0.020000	0.522388	
mm_137852.1	chr17	31097919	31098119	+	1	NA	NA	NA	31592	NM_011575	21786	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.005000	0.512438	
mm_18562.1	chr2	65238691	65238891	-	1	NA	NA	NA	-165	NM_027225	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.110000	0.721393	
mm_101563.1	chr11	34098448	34098648	-	1	NA	NA	NA	51347	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.035000	0.487562	
mm_18132.1	chr2	45005165	45005365	-	1	NA	NA	NA	17912	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.020000	0.402985	
mm_103855.1	chr11	83286572	83286772	-	1	NA	NA	NA	54	NM_001166028	237890	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0.000000	0.467662	
mm_16115.1	chr2	169723870	169724070	+	1	NA	NA	NA	90324	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.045000	0.457711	
mm_76859.1	chr8	105467820	105468020	-	1	NA	NA	NA	3502	NM_026481	67971	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0.060000	0.572139	
mm_88828.1	chr10	80804119	80804319	+	1	NA	NA	NA	-1029	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.005000	0.686567	
mm_82678.1	chr9	22132192	22132392	-	1	NA	NA	NA	-427	NM_001102404	11433	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.040000	0.542289	
mm_86542.1	chr10	8883980	8884180	+	1	NA	NA	NA	1990	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.010000	0.502488	
mm_112607.1	chr13	14522401	14522601	+	1	NA	NA	NA	725	NM_001081348	94253	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.045000	0.597015	-78(TTGTCTAAAAGC,-,0.00)
mm_27049.1	chr3	27194101	27194301	-	1	NA	NA	NA	11197	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.015000	0.452736	
mm_162171.1	chrX	101288237	101288437	+	1	NA	NA	NA	-10842	NM_172932	245537	Mm.121508	NM_172932	ENSMUSG00000031302	Nlgn3	A230085M13Rik|HNL3|NL3	neuroligin 3	protein-coding	0.010000	0.472637	
mm_95488.1	chr11	51605499	51605699	+	1	NA	NA	NA	1282	NM_001048061	15384	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.010000	0.412935	
mm_119266.1	chr14	34052643	34052843	+	1	NA	NA	NA	-727	NM_172808	239029	Mm.477093	NM_172808	ENSMUSG00000047441	Antxrl	1700112N15Rik|4933430J11	anthrax toxin receptor-like	protein-coding	0.015000	0.552239	
mm_51562.1	chr6	83523116	83523316	+	1	NA	NA	NA	13035	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.005000	0.512438	
mm_76090.1	chr8	79638614	79638814	-	1	NA	NA	NA	-962	NM_001256033	73945	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.040000	0.412935	
mm_97237.1	chr11	75655920	75656120	+	1	NA	NA	NA	5	NM_001080775	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.080000	0.751244	
mm_111932.1	chr12	108888680	108888880	-	1	NA	NA	NA	4418	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.010000	0.457711	
mm_117017.1	chr13	58127010	58127210	-	1	NA	NA	NA	1446	NM_029872	77134	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	0.030000	0.447761	
mm_98534.1	chr11	95009673	95009873	+	1	NA	NA	NA	-106	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.080000	0.621891	
mm_5157.1	chr1	9991825	9992025	-	1	NA	NA	NA	17211	NR_110971	69312	Mm.386795	NM_027033	ENSMUSG00000025916	Ppp1r42	1700011J18Rik|4930418G15Rik|Lrrc67|TLRR	protein phosphatase 1, regulatory subunit 42	protein-coding	0.000000	0.527363	
mm_55434.1	chr6	66875570	66875770	-	1	NA	NA	NA	-20727	NM_001177557	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.060000	0.547264	
mm_77769.1	chr9	3005528	3005728	+	1	NA	NA	NA	33115	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.343284	
mm_9408.1	chr1	172274343	172274543	-	1	NA	NA	NA	-16019	NM_013734	27222	Mm.482392	NM_013734	ENSMUSG00000007107	Atp1a4	-	ATPase, Na+/K+ transporting, alpha 4 polypeptide	protein-coding	0.020000	0.527363	
mm_1635.1	chr1	74506283	74506483	+	1	NA	NA	NA	323	NM_021383	58184	Mm.291708	NM_021383	ENSMUSG00000026174	Cnot9	2610007F23Rik|AI593551|Fl10|Rqcd1	CCR4-NOT transcription complex, subunit 9	protein-coding	0.110000	0.701493	
mm_71764.1	chr8	66400417	66400617	+	1	NA	NA	NA	14216	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.010000	0.432836	
mm_125066.1	chr15	25940938	25941138	+	1	NA	NA	NA	212	NM_025459	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.020000	0.517413	80(CTTCTTAGAGCC,+,0.00)
mm_16216.1	chr2	173073193	173073393	+	1	NA	NA	NA	46232	NM_001081387	664799	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris|OTTMUSG00000016680	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.015000	0.547264	
mm_162920.1	chr10	120653268	120653468	-	1	NA	NA	NA	-112364	NR_038000	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.000000	0.527363	
mm_52044.1	chr6	96592888	96593088	+	1	NA	NA	NA	-426783	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo	0.015000	0.432836	
mm_100374.1	chr11	119229012	119229212	+	1	NA	NA	NA	540	NM_175430	207607	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	0.070000	0.557214	
mm_154080.1	chr19	56566003	56566203	-	1	NA	NA	NA	17842	NM_025811	66866	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.020000	0.452736	
mm_8896.1	chr1	162898620	162898820	-	1	NA	NA	NA	-8	NM_018881	55990	Mm.10929	NM_018881	ENSMUSG00000040170	Fmo2	2310008D08Rik|2310042I22Rik|AW107733	flavin containing monooxygenase 2	protein-coding	0.020000	0.522388	
mm_139733.1	chr17	57483757	57483957	+	1	NA	NA	NA	61457	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.000000	0.368159	
mm_149765.1	chr19	22926973	22927173	+	1	NA	NA	NA	176468	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.010000	0.472637	
mm_71652.1	chr8	60505804	60506004	+	1	NA	NA	NA	-220	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.050000	0.577114	
mm_123248.1	chr14	60485544	60485744	-	1	NA	NA	NA	107358	NM_001164705	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.055000	0.577114	
mm_173290.1	chrY	2314351	2314551	+	1	NA	NA	NA	-144042	NM_009571	22768	Mm.411381	NM_009571	ENSMUSG00000000103	Zfy2	Zfy-2	zinc finger protein 2, Y-linked	protein-coding	0.020000	0.482587	
mm_30605.1	chr4	6394642	6394842	+	1	NA	NA	NA	29062	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.010000	0.452736	
mm_139275.1	chr17	48233776	48233976	+	1	NA	NA	NA	1137	NM_021406	58217	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	0.015000	0.353234	
mm_100199.1	chr11	116753181	116753381	+	1	NA	NA	NA	1114	NR_003364	193217	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	0.020000	0.517413	
mm_52861.1	chr6	122294080	122294280	+	1	NA	NA	NA	-11347	NM_016970	50928	Mm.20434	NM_016970	ENSMUSG00000030114	Klrg1	2F1-Ag|MAFA|MAFA-L	killer cell lectin-like receptor subfamily G, member 1	protein-coding	0.000000	0.447761	
mm_64170.1	chr7	141448704	141448904	+	1	NA	NA	NA	1	NR_034049	100217419		NR_034049	ENSMUSG00000064666	Snora52	MBI-20	small nucleolar RNA, H/ACA box 52	snoRNA	0.010000	0.517413	
mm_139861.1	chr17	69982313	69982513	+	1	NA	NA	NA	13340	NM_001347411	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.005000	0.422886	
mm_105254.1	chr11	102354267	102354467	-	1	NA	NA	NA	10914	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.015000	0.512438	
mm_162643.1	chr1	193338478	193338678	+	1	NA	NA	NA	31704	NM_144817	215303	Mm.40329	NM_144817	ENSMUSG00000016179	Camk1g	CLICK-III|CaMKIgamma	calcium/calmodulin-dependent protein kinase I gamma	protein-coding	0.000000	0.552239	
mm_9237.1	chr1	171294670	171294870	-	1	NA	NA	NA	212	NM_025388	66155	Mm.2815	NM_025388	ENSMUSG00000062963	Ufc1	1110021H02Rik|AA062310|ESTM29	ubiquitin-fold modifier conjugating enzyme 1	protein-coding	0.080000	0.597015	-94(CCGCTTTAAAGC,-,0.00),-92(GCTTTAAAGCCA,+,0.00)
mm_108126.1	chr12	75983594	75983794	+	1	NA	NA	NA	74591	NR_039560	100628610		NR_039560	ENSMUSG00000092922	Mir5101	mmu-mir-5101|mu-mir-5101	microRNA 5101	ncRNA	0.015000	0.452736	
mm_92043.1	chr10	62494848	62495048	-	1	NA	NA	NA	-8143	NM_133672	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.035000	0.482587	
mm_34623.1	chr4	150568726	150568926	+	1	NA	NA	NA	83348	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.005000	0.507463	-32(TTCTTTATAGGC,+,0.00),-32(TTCTTTATAGGC,-,0.00),-30(CTTTATAGGCCC,+,0.00)
mm_47250.1	chr5	121593388	121593588	-	1	NA	NA	NA	336	NM_009656	11669	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.125000	0.681592	
mm_110975.1	chr12	76962109	76962309	-	1	NA	NA	NA	39	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.110000	0.651741	
mm_106027.1	chr11	116030002	116030202	-	1	NA	NA	NA	-214	NM_001286006	217331	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0.030000	0.492537	
mm_102121.1	chr11	53307534	53307734	-	1	NA	NA	NA	-7155	NM_008300	15525	Mm.239865	NM_008300	ENSMUSG00000020361	Hspa4	70kDa|AI317151|APG-2|Hsp110|Hsp70RY|mKIAA4025	heat shock protein 4	protein-coding	0.020000	0.477612	
mm_88884.1	chr10	81135182	81135382	+	1	NA	NA	NA	-989	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.060000	0.592040	
mm_104297.1	chr11	90390668	90390868	-	1	NA	NA	NA	149	NM_172563	217082	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0.100000	0.651741	
mm_84606.1	chr9	70141422	70141622	-	1	NA	NA	NA	35	NM_029784	76886	Mm.44355	NM_029784	ENSMUSG00000032224	Fam81a	6430514L14Rik	family with sequence similarity 81, member A	protein-coding	0.160000	0.786070	
mm_26729.1	chr3	5220683	5220883	-	1	NA	NA	NA	40	NR_045905	72608	Mm.384359	NR_045905		2700069I18Rik	-	RIKEN cDNA 2700069I18 gene	ncRNA	0.035000	0.562189	
mm_101046.1	chr11	8624585	8624785	-	1	NA	NA	NA	39850	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.110000	0.686567	
mm_157618.1	chrX	56549430	56549630	-	1	NA	NA	NA	76	NM_001033372	270599	Mm.424438	NM_001033372	ENSMUSG00000064016	Gm648	-	predicted gene 648	protein-coding	0.030000	0.517413	
mm_124490.1	chr14	121738837	121739037	-	1	NA	NA	NA	-8	NM_001128307	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.010000	0.492537	
mm_97599.1	chr11	78949065	78949265	+	1	NA	NA	NA	23874	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.020000	0.532338	
mm_76773.1	chr8	95864677	95864877	-	1	NA	NA	NA	-11286	NM_172758	234595	Mm.29267	NM_172758	ENSMUSG00000036534	Slc38a7	D430050E18	solute carrier family 38, member 7	protein-coding	0.020000	0.487562	28(GGCTATAAGAGA,-,0.00)
mm_99837.1	chr11	109011890	109012090	+	1	NA	NA	NA	91641	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.080000	0.606965	
mm_91939.1	chr10	60752697	60752897	-	1	NA	NA	NA	-15	NM_023596	71279	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.065000	0.691542	
mm_157222.1	chrX	13518836	13519036	-	1	NA	NA	NA	51264	NM_173415	236690	Mm.90233	NM_173415	ENSMUSG00000051228	Nyx	CLNP|CSNB1|CSNB4|nob	nyctalopin	protein-coding	0.000000	0.368159	
mm_103003.1	chr11	69695576	69695776	-	1	NA	NA	NA	422	NM_011614	21944	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0.065000	0.766169	
mm_10340.1	chr2	11653459	11653659	+	1	NA	NA	NA	10767	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.015000	0.562189	
mm_143919.1	chr17	85618267	85618467	-	1	NA	NA	NA	29	NR_038084	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.060000	0.656716	
mm_38751.1	chr4	145577235	145577435	-	1	NA	NA	NA	-7865	NM_001324416	433801	Mm.276881	NM_001013808	ENSMUSG00000078502	Gm13212	OTTMUSG00000010965	predicted gene 13212	protein-coding	0.050000	0.572139	-48(CTTTATATGCCC,+,0.00)
mm_127083.1	chr15	97718620	97718820	+	1	NA	NA	NA	2430	NM_008902	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.015000	0.537313	
mm_73913.1	chr8	119666175	119666375	+	1	NA	NA	NA	-90	NM_023395	67866	Mm.87599	NM_023395	ENSMUSG00000023336	Wfdc1	2310058A03Rik|ps20	WAP four-disulfide core domain 1	protein-coding	0.015000	0.592040	
mm_156934.1	chrX	169879526	169879726	+	1	NA	NA	NA	7	NM_001290505	17318	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	0.065000	0.572139	
mm_102575.1	chr11	61653031	61653231	-	1	NA	NA	NA	-190	NM_027817	71520	Mm.202760	NM_027817	ENSMUSG00000004837	Grap	8430435N19Rik|BB233594	GRB2-related adaptor protein	protein-coding	0.010000	0.487562	-33(GCTCATAAACCC,+,0.00)
mm_30164.1	chr3	144188898	144189098	-	1	NA	NA	NA	13334	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.020000	0.482587	
mm_52337.1	chr6	110648697	110648897	+	1	NA	NA	NA	3199	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.000000	0.333333	
mm_6248.1	chr1	68184318	68184518	-	1	NA	NA	NA	923641	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	0.000000	0.333333	
mm_8479.1	chr1	153518852	153519052	-	1	NA	NA	NA	30762	NM_028749	74091	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0.020000	0.422886	
mm_16168.1	chr2	172545620	172545820	+	1	NA	NA	NA	-3873	NM_009335	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding	0.035000	0.562189	
mm_22740.1	chr3	19956828	19957028	+	1	NA	NA	NA	-126	NM_001276250	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.010000	0.388060	
mm_75834.1	chr8	70523000	70523200	-	1	NA	NA	NA	80	NM_029366	75620	Mm.482129	NM_029366	ENSMUSG00000055553	Kxd1	0610030B01Rik|2810422J05Rik|C78305	KxDL motif containing 1	protein-coding	0.120000	0.726368	
mm_75362.1	chr8	45283227	45283427	-	1	NA	NA	NA	11508	NM_008455	16621	Mm.482691	NM_008455	ENSMUSG00000109764	Klkb1	APS|Kal-3|Kal3|Klk3|PSA	kallikrein B, plasma 1	protein-coding	0.020000	0.373134	-89(GTGTCTAAAAAG,-,0.00)
mm_153798.1	chr19	46039119	46039319	-	1	NA	NA	NA	402	NM_010697	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.065000	0.706468	
mm_151233.1	chr19	53793171	53793371	+	1	NA	NA	NA	-98960	NM_011050	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.045000	0.582090	
mm_161319.1	chr14	44724887	44725087	-	1	NA	NA	NA	0	NM_001162954	666744	Mm.387002	NM_001162954	ENSMUSG00000091923	Gm8267	EG666744	predicted gene 8267	protein-coding	0.010000	0.447761	4(CCTTTTATATTC,+,0.00)
mm_110050.1	chr12	17881930	17882130	-	1	NA	NA	NA	191216	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.150000	0.756219	
mm_70819.1	chr8	23130665	23130865	+	1	NA	NA	NA	-8265	NM_001310436	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.000000	0.492537	
mm_64256.1	chr7	141744605	141744805	+	1	NA	NA	NA	-44306	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.015544	0.525773	
mm_92724.1	chr10	80813410	80813610	-	1	NA	NA	NA	-12	NM_028001	71912	Mm.45137	NM_028001	ENSMUSG00000020216	Jsrp1	2300003C06Rik|2310032K21Rik|JP-45|JP45	junctional sarcoplasmic reticulum protein 1	protein-coding	0.020000	0.626866	
mm_21894.1	chr2	166155548	166155748	-	1	NA	NA	NA	35	NM_001252579	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.065000	0.592040	
mm_134224.1	chr16	11254247	11254447	-	1	NA	NA	NA	-22	NM_146066	14852	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	0.130000	0.636816	
mm_45236.1	chr5	53671344	53671544	-	1	NA	NA	NA	27144	NR_024201	19866		NR_024201	ENSMUSG00000089083	Rnu7	-	U7 small nuclear RNA	snRNA	0.025000	0.467662	
mm_62209.1	chr7	97842949	97843149	+	1	NA	NA	NA	110	NM_011035	18479	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding	0.060000	0.646766	
mm_114982.1	chr13	97293924	97294124	+	1	NA	NA	NA	52919	NM_007930	13803	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.015000	0.457711	-34(GGTTATAAAAAC,-,0.00)
mm_132243.1	chr16	32750942	32751142	+	1	NA	NA	NA	15156	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.005000	0.437811	
mm_59460.1	chr7	27196887	27197087	+	1	NA	NA	NA	-716	NM_001285825	53607	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0.000000	0.407960	-45(TCCTTTAAAAAC,-,0.00)
mm_19210.1	chr2	84531332	84531532	-	1	NA	NA	NA	-24559	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	0.005000	0.507463	
mm_159620.1	chr4	134402846	134403046	+	1	NA	NA	NA	-24	NM_001285877	100163	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	0.020000	0.582090	
mm_58674.1	chr7	10687692	10687892	+	1	NA	NA	NA	-1	NM_172481	210045	Mm.95244	NM_172481	ENSMUSG00000034087	Nlrp4b	AU022726|E330024M09|Nalp-gamma|Nalp4b	NLR family, pyrin domain containing 4B	protein-coding	0.005000	0.432836	
mm_171333.1	chr3	98820849	98821049	+	1	NA	NA	NA	-6506	NM_013821	15497	Mm.14435	NM_013821	ENSMUSG00000027869	Hsd3b6	D19210	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 6	protein-coding	0.095000	0.507463	-38(ACATTTATAGAC,+,0.00)
mm_83880.1	chr9	55283555	55283755	-	1	NA	NA	NA	-30	NM_032002	83961	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.040000	0.532338	
mm_135495.1	chr16	46120332	46120532	-	1	NA	NA	NA	-184	NM_032465	84544	Mm.29204	NM_032465	ENSMUSG00000022657	Cd96	1700109I12Rik|Tactile	CD96 antigen	protein-coding	0.020000	0.417910	-33(ATGTATAAAAAG,-,0.00),76(GTCTTTTAAAGG,-,0.00),77(TCTTTTAAAGGT,+,0.00),78(CTTTTAAAGGTG,+,0.00)
mm_59718.1	chr7	28767534	28767734	+	1	NA	NA	NA	882	NM_001122766	64383	Mm.272443	NM_022432	ENSMUSG00000015149	Sirt2	5730427M03Rik|SIR2L2|Sir2l	sirtuin 2	protein-coding	0.020000	0.597015	
mm_71240.1	chr8	40908637	40908837	+	1	NA	NA	NA	-17496	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.005000	0.288557	
mm_21028.1	chr2	152414691	152414891	-	1	NA	NA	NA	253	NM_175126	67917	Mm.391810	NM_175126	ENSMUSG00000074682	Zcchc3	2810406K24Rik	zinc finger, CCHC domain containing 3	protein-coding	0.135000	0.751244	
mm_38063.1	chr4	134018733	134018933	-	1	NA	NA	NA	-17	NM_145833	83557	Mm.302567	NM_145833	ENSMUSG00000050966	Lin28a	AL024421|ENSMUSG00000070700|Gm10299|Lin-28|Lin28|Tex17|lin-28A	lin-28 homolog A (C. elegans)	protein-coding	0.065000	0.651741	
mm_69915.1	chr7	141702675	141702875	-	1	NA	NA	NA	12435	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.010000	0.517413	
mm_152375.1	chr19	10225155	10225355	-	1	NA	NA	NA	15493	NM_001033481	225908	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.065000	0.626866	
mm_109077.1	chr12	104406616	104406816	+	1	NA	NA	NA	8	NM_009252	20716	Mm.482074	NM_009252	ENSMUSG00000021091	Serpina3n	Spi2-2|Spi2.2|Spi2/eb.4	serine (or cysteine) peptidase inhibitor, clade A, member 3N	protein-coding	0.010000	0.532338	-23(GCTTTAATGTGC,+,0.00)
mm_125402.1	chr15	41487261	41487461	+	1	NA	NA	NA	39879	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.005000	0.288557	
mm_54392.1	chr6	31220192	31220392	-	1	NA	NA	NA	-59	NR_040258	73652	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.055000	0.641791	
mm_86388.1	chr9	123940085	123940285	-	1	NA	NA	NA	28507	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.005000	0.368159	
mm_43748.1	chr5	140392844	140393044	+	1	NA	NA	NA	-3636	NM_172277	231834	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.010000	0.432836	
mm_97003.1	chr11	70869565	70869765	+	1	NA	NA	NA	24904	NM_001291142	54189	Mm.7087	NM_019400	ENSMUSG00000020817	Rabep1	Rab5ep|rabaptin-5|rabaptin-5alpha	rabaptin, RAB GTPase binding effector protein 1	protein-coding	0.015000	0.402985	-33(AAGTTTTAAAGG,-,0.00)
mm_108491.1	chr12	83674944	83675144	+	1	NA	NA	NA	-13519	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.005000	0.368159	
mm_87332.1	chr10	42940328	42940528	+	1	NA	NA	NA	79916	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.040000	0.572139	
mm_166591.1	chr6	56714911	56715111	+	1	NA	NA	NA	106	NM_030235	78937	Mm.105343	NM_030235	ENSMUSG00000029787	Avl9	5830411G16Rik|D730049P16Rik|mKIAA0241	AVL9 cell migration associated	protein-coding	0.130000	0.736318	
mm_102347.1	chr11	58139446	58139646	-	1	NA	NA	NA	28993	NM_172558	216766	Mm.275349	NM_172558	ENSMUSG00000037275	Gemin5	AA407055|AA407208|AI451603|BB194447|C330013N08	gem (nuclear organelle) associated protein 5	protein-coding	0.000000	0.417910	
mm_130873.1	chr15	102231831	102232031	-	1	NA	NA	NA	4	NM_013566	16421	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0.010000	0.606965	
mm_104716.1	chr11	98053217	98053417	-	1	NA	NA	NA	145	NM_146028	217154	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0.105000	0.736318	
mm_112174.1	chr12	113421094	113421294	-	1	NA	NA	NA	-68371	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.542289	
mm_160475.1	chr8	120144623	120144823	+	1	NA	NA	NA	-206	NM_001163760	234797	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.005000	0.572139	
mm_130261.1	chr15	96642764	96642964	-	1	NA	NA	NA	49	NM_001166458	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.105000	0.746269	
mm_159061.1	chr2	13793465	13793665	-	1	NA	NA	NA	-45	NM_145838	241230	Mm.330004	NM_145838	ENSMUSG00000003418	St8sia6	1700007J08Rik|AI314453|AI875066|ST8SiaVI|Siat8f	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	protein-coding	0.135000	0.761194	
mm_138256.1	chr17	34590711	34590911	+	1	NA	NA	NA	1005	NM_134116	106512	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.030000	0.636816	
mm_37641.1	chr4	128260794	128260994	-	1	NA	NA	NA	1	NM_027036	69317	Mm.331893	NM_027036	ENSMUSG00000048686	Hmgb4	1700001F22Rik|AI326135	high-mobility group box 4	protein-coding	0.015000	0.532338	
mm_88147.1	chr10	69533669	69533869	+	1	NA	NA	NA	61	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.025000	0.527363	
mm_120092.1	chr14	57889729	57889929	+	1	NA	NA	NA	433	NM_029492	75965	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|ENSMUSG00000055956|HK11	zinc finger, DHHC domain containing 20	protein-coding	0.080000	0.656716	
mm_145262.1	chr18	52615929	52616129	+	1	NA	NA	NA	114	NM_025749	66758	Mm.251599	NM_025749	ENSMUSG00000046886	Zfp474	4933409D10Rik|Znf474	zinc finger protein 474	protein-coding	0.025000	0.537313	
mm_18121.1	chr2	44997185	44997385	-	1	NA	NA	NA	25892	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.020000	0.417910	
mm_158137.1	chrX	103186545	103186745	-	1	NA	NA	NA	19	NM_008671	17954	Mm.388694	NM_008671	ENSMUSG00000082229	Nap1l2	Bpx	nucleosome assembly protein 1-like 2	protein-coding	0.035000	0.562189	
mm_169438.1	chr14	56262165	56262365	-	1	NA	NA	NA	69	NM_013542	14939	Mm.14874	NM_013542	ENSMUSG00000015437	Gzmb	AI553453|CCP-1/C11|CCP1|Ctla-1|Ctla1|GZB	granzyme B	protein-coding	0.010000	0.497512	-9(CATCATAAAAGC,-,0.00)
mm_164232.1	chr15	89542487	89542687	+	1	NA	NA	NA	-25739	NM_013455	11434	Mm.57	NM_013455	ENSMUSG00000022622	Acr	-	acrosin prepropeptide	protein-coding	0.005000	0.407960	40(GTTTTTAGAGAC,+,0.00)
mm_25325.1	chr3	106565814	106566014	+	1	NA	NA	NA	-18112	NM_133869	99712	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.005000	0.323383	
mm_76293.1	chr8	84201915	84202115	-	1	NA	NA	NA	-6503	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.010000	0.532338	
mm_145741.1	chr18	64288236	64288436	+	1	NA	NA	NA	-11156	NR_045366	73588	Mm.65475	NR_045366	ENSMUSG00000086128	St8sia3os	1700091E21Rik	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3, opposite strand	ncRNA	0.035000	0.472637	
mm_164690.1	chr17	47729212	47729412	-	1	NA	NA	NA	2470	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.015000	0.562189	
mm_148800.1	chr19	6241617	6241817	+	1	NA	NA	NA	49	NM_194348	329015	Mm.277384	NM_194348	ENSMUSG00000024773	Atg2a	1810013C15Rik|A830054M12|BC023754|mKIAA0404	autophagy related 2A	protein-coding	0.130000	0.721393	
mm_66248.1	chr7	35555984	35556184	-	1	NA	NA	NA	-156	NM_033080	110959	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	0.025000	0.537313	
mm_149347.1	chr19	10859728	10859928	+	1	NA	NA	NA	9951	NM_133804	98170	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.020000	0.527363	
mm_89496.1	chr10	93833831	93834031	+	1	NA	NA	NA	2376	NM_001206851	327799	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.115000	0.736318	
mm_45618.1	chr5	75835837	75836037	-	1	NA	NA	NA	142491	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.025000	0.487562	
mm_35594.1	chr4	43010418	43010618	-	1	NA	NA	NA	-217	NM_053081	60534	Mm.23122	NM_053081	ENSMUSG00000028453	Fancg	AU041407|Xrcc9	Fanconi anemia, complementation group G	protein-coding	0.060000	0.606965	
mm_52924.1	chr6	122921735	122921935	+	1	NA	NA	NA	-13	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.005000	0.378109	
mm_163334.1	chr12	11436429	11436629	-	1	NA	NA	NA	120	NM_012038	26950	Mm.27005	NM_012038	ENSMUSG00000054459	Vsnl1	VILIP|Vnsl1	visinin-like 1	protein-coding	0.070000	0.572139	39(TCCTAGAAAAGG,-,0.00)
mm_54989.1	chr6	48770638	48770838	-	1	NA	NA	NA	113	NM_031247	83408	Mm.333050	NM_031247	ENSMUSG00000039264	Gimap3	2010110D23Rik|Gimap5|Ian4	GTPase, IMAP family member 3	protein-coding	0.010000	0.507463	
mm_61673.1	chr7	80830651	80830851	+	1	NA	NA	NA	-27420	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.020000	0.557214	
mm_139993.1	chr17	72918421	72918621	+	1	NA	NA	NA	216	NM_029999	77889	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.030000	0.482587	
mm_122179.1	chr14	31553704	31553904	-	1	NA	NA	NA	23579	NM_009937	382864	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.040000	0.577114	
mm_18252.1	chr2	52232881	52233081	-	1	NA	NA	NA	-58021	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.020000	0.432836	71(TGCTTTTTAAGA,-,0.00)
mm_47019.1	chr5	115489868	115490068	-	1	NA	NA	NA	-5484	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.070000	0.587065	
mm_96851.1	chr11	70045221	70045421	+	1	NA	NA	NA	-8803	NM_001291131	11889	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.010000	0.497512	
mm_37549.1	chr4	125127770	125127970	-	1	NA	NA	NA	11	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.115000	0.701493	0(TGCCCTTAAAGC,-,0.00),2(CCCTTAAAGCAC,+,0.00)
mm_171407.1	chr4	129212641	129212841	+	1	NA	NA	NA	15170	NM_001285866	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.010000	0.437811	
mm_166739.1	chr6	124570192	124570392	+	1	NA	NA	NA	-138	NM_001113356	667277	Mm.481484	NM_001113356	ENSMUSG00000098470	C1rb	Gm8551|mC1rB	complement component 1, r subcomponent B	protein-coding	0.015000	0.492537	
mm_111156.1	chr12	83439822	83440022	-	1	NA	NA	NA	47814	NM_001267626	70127	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0.005000	0.557214	
mm_120052.1	chr14	56647990	56648190	+	1	NA	NA	NA	-20158	NM_023773	75339	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	0.000000	0.611940	
mm_122061.1	chr14	30363797	30363997	-	1	NA	NA	NA	-10411	NM_001083616	12289	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.005000	0.363184	
mm_95832.1	chr11	55496471	55496671	+	1	NA	NA	NA	13865	NR_028480	100303747	Mm.453534	NR_028480	ENSMUSG00000065061	Gm12238	Mbi-39|OTTMUSG00000005697	predicted gene 12238	snoRNA	0.005000	0.482587	
mm_159069.1	chr2	25080309	25080509	+	1	NA	NA	NA	86	NM_028093	72090	Mm.33403	NM_028093	ENSMUSG00000036813	Entpd8	-	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding	0.015000	0.542289	
mm_106246.1	chr11	117813307	117813507	-	1	NA	NA	NA	3740	NM_009304	20973	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0.020000	0.587065	
mm_13432.1	chr2	105017034	105017234	+	1	NA	NA	NA	-107	NM_145380	98221	Mm.379278	NM_145380	ENSMUSG00000027170	Eif3m	Ga17|Pcid1|Tango7	eukaryotic translation initiation factor 3, subunit M	protein-coding	0.070000	0.641791	
mm_107750.1	chr12	59066802	59067002	+	1	NA	NA	NA	-17	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.110000	0.666667	
mm_26094.1	chr3	136902921	136903121	+	1	NA	NA	NA	232955	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.075000	0.552239	
mm_91858.1	chr10	59438812	59439012	-	1	NA	NA	NA	2867	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.035000	0.502488	
mm_157694.1	chrX	60426197	60426397	-	1	NA	NA	NA	-22316	NM_001037863	320940	Mm.490394	NM_001001798	ENSMUSG00000062949	Atp11c	A330005H02Rik|AI315324|Ig	ATPase, class VI, type 11C	protein-coding	0.015000	0.542289	
mm_5912.1	chr1	55021993	55022193	-	1	NA	NA	NA	5385	NM_031179	81898	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	0.000000	0.368159	
mm_52785.1	chr6	121256889	121257089	+	1	NA	NA	NA	11083	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.015000	0.378109	
mm_82857.1	chr9	31464114	31464314	-	1	NA	NA	NA	24	NM_144936	235135	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	0.060000	0.681592	
mm_1042.1	chr1	58795529	58795729	+	1	NA	NA	NA	255	NM_009812	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.075000	0.597015	
mm_170537.1	chr19	38869703	38869903	-	1	NA	NA	NA	33224	NM_145952	209478	Mm.391153	NM_145952	ENSMUSG00000048720	Tbc1d12	BC033574	TBC1D12: TBC1 domain family, member 12	protein-coding	0.025000	0.497512	
mm_119009.1	chr14	29968226	29968426	+	1	NA	NA	NA	-54	NM_019979	80795	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	0.030000	0.572139	
mm_67966.1	chr7	100590757	100590957	-	1	NA	NA	NA	-7727	NM_198831	52443	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e	mitochondrial ribosomal protein L48	protein-coding	0.020000	0.457711	
mm_127200.1	chr15	99125801	99126001	+	1	NA	NA	NA	-944	NM_139140	72572	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.040000	0.517413	
mm_97501.1	chr11	78394399	78394599	+	1	NA	NA	NA	14	NR_003282	790911	Mm.457257	NR_003282	ENSMUSG00000085747	Slc13a2os	Gm11194|OTTMUSG00000000132	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand	ncRNA	0.010000	0.582090	
mm_122870.1	chr14	54925490	54925690	-	1	NA	NA	NA	1198	NM_010112	13644	Mm.236438	NM_010112	ENSMUSG00000022203	Efs	-	embryonal Fyn-associated substrate	protein-coding	0.030000	0.572139	
mm_17125.1	chr2	24763089	24763289	-	1	NA	NA	NA	-37	NM_007579	12287	Mm.4424	NM_007579	ENSMUSG00000004113	Cacna1b	AW050276|AW060892|AW822256|BIII|Cav2.2|Cchn1a|alpha(1B)	calcium channel, voltage-dependent, N type, alpha 1B subunit	protein-coding	0.135000	0.761194	-15(CCCCTTATAGGG,+,0.00),-15(CCCCTTATAGGG,-,0.00),-13(CCTTATAGGGCG,+,0.00)
mm_18798.1	chr2	73892127	73892327	-	1	NA	NA	NA	412	NM_001284371	11909	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0.120000	0.691542	
mm_15051.1	chr2	152876464	152876664	+	1	NA	NA	NA	11497	NR_049195	100885834		NR_049195	ENSMUSG00000093746	Mir5622	Gm24421|mmu-mir-5622	microRNA 5622	ncRNA	0.005000	0.398010	
mm_54936.1	chr6	48445636	48445836	-	1	NA	NA	NA	89	NM_020589	68910	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	0.030000	0.611940	
mm_146741.1	chr18	15403584	15403784	-	1	NA	NA	NA	74	NM_001317729	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.020000	0.537313	
mm_149799.1	chr19	23687093	23687293	+	1	NA	NA	NA	-207	NM_028208	72351	Mm.474795	NM_028208	ENSMUSG00000074925	Ptar1	1700084D09Rik|2010013L17Rik|4930428J16Rik|AI449677	protein prenyltransferase alpha subunit repeat containing 1	protein-coding	0.055000	0.631841	
mm_86955.1	chr10	24920674	24920874	+	1	NA	NA	NA	6696	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.030000	0.507463	25(TGCCATTAAAAG,-,0.00)
mm_152697.1	chr19	17125491	17125691	-	1	NA	NA	NA	169473	NM_181348	353211	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.025000	0.537313	
mm_165858.1	chr4	20032178	20032378	+	1	NA	NA	NA	-9774	NM_010281	14590	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0.005000	0.402985	
mm_54448.1	chr6	34745873	34746073	-	1	NA	NA	NA	-34459	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.010000	0.472637	
mm_40742.1	chr5	66686101	66686301	+	1	NA	NA	NA	-9704	NR_102714	101202684	Mm.381468	NR_102714	ENSMUSG00000087601	Uchl1os	Gm16832|Uchl1as	ubiquitin carboxy-terminal hydrolase L1, opposite strand	ncRNA	0.005000	0.442786	
mm_28542.1	chr3	92827148	92827348	-	1	NA	NA	NA	-1	NM_028629	433619	Mm.28359	NM_028629	ENSMUSG00000059832	Kprp	1110001M24Rik|AA589586	keratinocyte expressed, proline-rich	protein-coding	0.005000	0.507463	-32(CTTTATATAAAC,+,0.00)
mm_93448.1	chr10	109903917	109904117	-	1	NA	NA	NA	96202	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.025000	0.432836	
mm_48051.1	chr5	136472314	136472514	-	1	NA	NA	NA	93567	NM_001291239	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.015000	0.452736	
mm_150572.1	chr19	40119656	40119856	+	1	NA	NA	NA	30077	NM_001167875	107141	Mm.474575	NM_134144	ENSMUSG00000054827	Cyp2c50	AI266900	cytochrome P450, family 2, subfamily c, polypeptide 50	protein-coding	0.035000	0.457711	
mm_29712.1	chr3	123690050	123690250	-	1	NA	NA	NA	702	NR_121616	83398	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	0.020000	0.477612	
mm_76868.1	chr8	105496992	105497192	-	1	NA	NA	NA	-222	NM_175160	70796	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik	zinc finger, DHHC domain containing 1	protein-coding	0.090000	0.686567	
mm_109641.1	chr12	112808858	112809058	+	1	NA	NA	NA	-17	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.140000	0.721393	
mm_141079.1	chr17	25868572	25868772	-	1	NA	NA	NA	66	NM_026633	68241	Mm.328870	NM_026633	ENSMUSG00000025732	Fam195a	9530058B02Rik|Mcrip2	family with sequence similarity 195, member A	protein-coding	0.100000	0.721393	-98(CTCCTTAAAGGG,-,0.00),-96(CCTTAAAGGGGC,+,0.00)
mm_146336.1	chr18	82474992	82475192	+	1	NA	NA	NA	-31	NM_010777	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.085000	0.691542	
mm_9648.1	chr1	177260418	177260618	-	1	NA	NA	NA	-11751	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.010000	0.472637	
mm_4448.1	chr1	172588612	172588812	+	1	NA	NA	NA	1856	NM_029084	74748	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	0.015000	0.582090	
mm_124016.1	chr14	76506527	76506727	-	1	NA	NA	NA	2117	NM_009366	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.030000	0.646766	
mm_84298.1	chr9	63377870	63378070	-	1	NA	NA	NA	-118	NM_011840	23938	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	0.075000	0.621891	
mm_41658.1	chr5	98854458	98854658	+	1	NA	NA	NA	143	NM_001310677	110075	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0.025000	0.542289	
mm_155517.1	chrX	74254643	74254843	+	1	NA	NA	NA	56	NM_007927	13726	Mm.18892	NM_007927	ENSMUSG00000001964	Emd	AW550900|Sta	emerin	protein-coding	0.095000	0.636816	
mm_66350.1	chr7	43525129	43525329	-	1	NA	NA	NA	7942	NM_001111058	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.000000	0.437811	
mm_76731.1	chr8	95020912	95021112	-	1	NA	NA	NA	3320	NM_173036	54672	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.040000	0.577114	
mm_124605.1	chr15	3279169	3279369	+	1	NA	NA	NA	8292	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.005000	0.562189	
mm_109304.1	chr12	109560570	109560770	+	1	NA	NA	NA	-3022	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.015000	0.462687	
mm_111124.1	chr12	81333438	81333638	-	1	NA	NA	NA	-358	NM_080440	110893	Mm.443748	NM_080440	ENSMUSG00000079055	Slc8a3	AW742262|Ncx3	solute carrier family 8 (sodium/calcium exchanger), member 3	protein-coding	0.045000	0.572139	
mm_36896.1	chr4	107680872	107681072	-	1	NA	NA	NA	3190	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.015000	0.472637	
mm_54958.1	chr6	48707526	48707726	-	1	NA	NA	NA	618	NM_153175	231931	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	0.005000	0.323383	
mm_115475.1	chr13	119488408	119488608	+	1	NA	NA	NA	-124	NR_027974	67304	Mm.474382	NM_026084	ENSMUSG00000074635	3110070M22Rik	-	RIKEN cDNA 3110070M22 gene	ncRNA	0.165000	0.796020	
mm_29437.1	chr3	109808157	109808357	-	1	NA	NA	NA	234250	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.010000	0.383085	
mm_73347.1	chr8	105413523	105413723	+	1	NA	NA	NA	1	NM_001170788	270091	Mm.212709	NM_001033371	ENSMUSG00000054320	Lrrc36	BC036564	leucine rich repeat containing 36	protein-coding	0.130000	0.805970	
mm_93329.1	chr10	99270345	99270545	-	1	NA	NA	NA	7214	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.035000	0.522388	
mm_99839.1	chr11	109343840	109344040	+	1	NA	NA	NA	-2927	NR_027883	67927	Mm.394490	NR_027883	ENSMUSG00000099630	1700096J18Rik	-	RIKEN cDNA 1700096J18 gene	ncRNA	0.030000	0.512438	
mm_162112.1	chrX	51681411	51681611	-	1	NA	NA	NA	91	NM_001077202	50786	Mm.252561	NM_015819	ENSMUSG00000062184	Hs6st2	6OST2	heparan sulfate 6-O-sulfotransferase 2	protein-coding	0.095000	0.696517	
mm_169414.1	chr14	52862653	52862853	-	1	NA	NA	NA	-367058	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.065000	0.567164	-41(CCTTATATAACA,+,0.00)
mm_111817.1	chr12	105685105	105685305	-	1	NA	NA	NA	36	NM_029654	76559	Mm.114362	NM_029654	ENSMUSG00000041341	Atg2b	2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067	autophagy related 2B	protein-coding	0.120000	0.641791	
mm_34420.1	chr4	145274094	145274294	+	1	NA	NA	NA	-27324	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.005000	0.537313	
mm_98674.1	chr11	96283986	96284186	+	1	NA	NA	NA	2181	NM_010461	15416	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	0.070000	0.681592	
mm_43305.1	chr5	134676601	134676801	+	1	NA	NA	NA	1547	NM_001305875	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.025000	0.572139	
mm_754.1	chr1	43730743	43730943	+	1	NA	NA	NA	241	NM_024283	78896	Mm.50109	NM_024283	ENSMUSG00000026051	1500015O10Rik	Ecrg4	RIKEN cDNA 1500015O10 gene	protein-coding	0.040000	0.651741	
mm_6339.1	chr1	71631986	71632186	-	1	NA	NA	NA	21148	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.015000	0.532338	
mm_50679.1	chr6	51557429	51557629	+	1	NA	NA	NA	13006	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.010000	0.467662	-20(GCTTTAAGATCC,+,0.00)
mm_50941.1	chr6	57824392	57824592	+	1	NA	NA	NA	633	NM_146168	232023	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.055000	0.547264	
mm_98719.1	chr11	96318767	96318967	+	1	NA	NA	NA	600	NM_010459	15412	Mm.3546	NM_010459	ENSMUSG00000038692	Hoxb4	Hox-2.6	homeobox B4	protein-coding	0.105000	0.616915	
mm_109359.1	chr12	109633110	109633310	+	1	NA	NA	NA	-2802	NR_046302	449562		NR_046302	ENSMUSG00000088294	AF357425	MBII-48	snoRNA AF357425	snoRNA	0.005000	0.363184	
mm_153238.1	chr19	36112923	36113123	-	1	NA	NA	NA	6821	NM_013468	107765	Mm.10279	NM_013468	ENSMUSG00000024803	Ankrd1	Alrp|CARP|Crap|MARP1	ankyrin repeat domain 1 (cardiac muscle)	protein-coding	0.010000	0.398010	
mm_160.1	chr1	12718405	12718605	+	1	NA	NA	NA	-40	NM_172294	240725	Mm.45563	NM_172294	ENSMUSG00000016918	Sulf1	AI467640|AW121680|mKIAA1077	sulfatase 1	protein-coding	0.030000	0.517413	
mm_2616.1	chr1	120488108	120488308	+	1	NA	NA	NA	16876	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.010000	0.567164	
mm_137452.1	chr17	26538241	26538441	+	1	NA	NA	NA	-23171	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.015000	0.547264	
mm_151509.1	chr19	58733276	58733476	+	1	NA	NA	NA	4489	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.015000	0.522388	
mm_80059.1	chr9	69397833	69398033	+	1	NA	NA	NA	-65	NM_145618	93697	Mm.35911	NM_145618	ENSMUSG00000032235	Ice2	B230343B06Rik|Narg2	interactor of little elongation complex ELL subunit 2	protein-coding	0.115000	0.651741	17(GCTTTTAAATGA,+,0.00)
mm_156800.1	chrX	163908999	163909199	+	1	NA	NA	NA	82	NM_001290379	108012	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	0.115000	0.751244	
mm_104900.1	chr11	99620334	99620534	-	1	NA	NA	NA	-30	NM_001177537	100502803	Mm.351892	NM_001177537	ENSMUSG00000062278	Gm11562	OTTMUSG00000002199	predicted gene 11562	protein-coding	0.000000	0.532338	-33(AGGTATATAAAG,-,0.00),-31(GTATATAAAGGG,-,0.00)
mm_54953.1	chr6	48682272	48682472	-	1	NA	NA	NA	-2206	NM_001243200	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.010000	0.477612	
mm_135022.1	chr16	32496055	32496255	-	1	NA	NA	NA	-126	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.005000	0.527363	
mm_159485.1	chr4	42153315	42153515	+	1	NA	NA	NA	-30	NM_001199962	100039863	Mm.6660	NM_001164046	ENSMUSG00000073877	Gm13306	OTTMUSG00000011352	predicted gene 13306	protein-coding	0.035000	0.497512	
mm_40952.1	chr5	76856558	76856758	+	1	NA	NA	NA	16059	NM_001163793	320827	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.020000	0.641791	
mm_114113.1	chr13	54949275	54949475	+	1	NA	NA	NA	-36	NM_001311128	107448	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	0.175000	0.840796	
mm_130499.1	chr15	98809390	98809590	-	1	NA	NA	NA	-1565	NM_001013741	13199	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.000000	0.562189	-34(GACTTTAAAAGC,-,0.00)
mm_78446.1	chr9	32224175	32224375	+	1	NA	NA	NA	26	NM_177379	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.010000	0.557214	
mm_131444.1	chr16	16232330	16232530	+	1	NA	NA	NA	19085	NM_026163	67451	Mm.2252	NM_026163	ENSMUSG00000041957	Pkp2	1200008D14Rik|1200012P04Rik|AA516617|Pkp2l	plakophilin 2	protein-coding	0.010000	0.373134	
mm_14575.1	chr2	135659067	135659267	+	1	NA	NA	NA	-75947	NR_015544	320684	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.135000	0.800995	
mm_37499.1	chr4	123687238	123687438	-	1	NA	NA	NA	-2978	NM_001199136	11426	Mm.402299	NM_009600	ENSMUSG00000028649	Macf1	ABP620|Acf7|Aclp7|MACF|R74989|mKIAA0465	microtubule-actin crosslinking factor 1	protein-coding	0.175000	0.850746	
mm_18845.1	chr2	75633438	75633638	-	1	NA	NA	NA	-25721	NM_146130	229279	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.030000	0.532338	
mm_77011.1	chr8	107581155	107581355	-	1	NA	NA	NA	7227	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.010000	0.537313	
mm_110105.1	chr12	26415107	26415307	-	1	NA	NA	NA	55	NM_001081977	108089	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	0.170000	0.791045	-34(AGGCATAAAGGG,-,0.00)
mm_112515.1	chr13	9093810	9094010	+	1	NA	NA	NA	29	NM_172585	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.115000	0.686567	
mm_38288.1	chr4	136890278	136890478	-	1	NA	NA	NA	2536	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.035000	0.601990	
mm_101001.1	chr11	8468476	8468676	-	1	NA	NA	NA	195959	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.045000	0.671642	
mm_168926.1	chr12	63112967	63113167	-	1	NA	NA	NA	425280	NR_131949	73309	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0.000000	0.442786	
mm_39538.1	chr5	21424874	21425074	+	1	NA	NA	NA	71	NM_177869	330050	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	0.040000	0.502488	-69(CTCCTTTAAAAC,-,0.00),-67(CCTTTAAAACTA,+,0.00)
mm_123380.1	chr14	63271592	63271792	-	1	NA	NA	NA	-26421	NM_001310610	14463	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0.025000	0.507463	
mm_116750.1	chr13	51801052	51801252	-	1	NA	NA	NA	-7405	NM_013660	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.020000	0.527363	
mm_77696.1	chr8	126589519	126589719	-	1	NA	NA	NA	3817	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.005000	0.388060	
mm_118073.1	chr13	102969341	102969541	-	1	NA	NA	NA	209186	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.015000	0.462687	
mm_142482.1	chr17	45720986	45721186	-	1	NA	NA	NA	12758	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0.000000	0.487562	
mm_149319.1	chr19	10839788	10839988	+	1	NA	NA	NA	-2656	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.010000	0.472637	
mm_72732.1	chr8	85083183	85083383	+	1	NA	NA	NA	14	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.070000	0.646766	
mm_48445.1	chr5	140648897	140649097	-	1	NA	NA	NA	34	NM_001308040	78339	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.145000	0.800995	
mm_16492.1	chr2	181155173	181155373	+	1	NA	NA	NA	1742	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.025000	0.577114	
mm_71514.1	chr8	46846409	46846609	+	1	NA	NA	NA	106764	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.030000	0.547264	
mm_11997.1	chr2	57115044	57115244	+	1	NA	NA	NA	-106	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.065000	0.567164	
mm_64757.1	chr7	4844618	4844818	-	1	NA	NA	NA	-22	NM_172737	232813	Mm.44666	NM_172737	ENSMUSG00000053550	Shisa7	ckamp59	shisa family member 7	protein-coding	0.095000	0.736318	
mm_23917.1	chr3	83046570	83046770	+	1	NA	NA	NA	3193	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.025000	0.517413	
mm_161557.1	chr16	13984512	13984712	-	1	NA	NA	NA	-2025	NM_144518	67254	Mm.216217	NM_144518	ENSMUSG00000044117	2900011O08Rik	MINP	RIKEN cDNA 2900011O08 gene	protein-coding	0.000000	0.288557	46(TCACATAAAAGC,-,0.00)
mm_142348.1	chr17	43612093	43612293	-	1	NA	NA	NA	18106	NM_001161366	210510	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	0.010000	0.303483	
mm_66689.1	chr7	45870133	45870333	-	1	NA	NA	NA	-2607	NM_133950	68137	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	0.010000	0.577114	-33(CCTTATAAAACA,+,0.00)
mm_64901.1	chr7	15964300	15964500	-	1	NA	NA	NA	3135	NM_153068	259300	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0.015000	0.557214	
mm_66028.1	chr7	30620805	30621005	-	1	NA	NA	NA	5246	NM_025628	110323	Mm.400	NM_025628	ENSMUSG00000036751	Cox6b1	2010000G05Rik|Cox6b	cytochrome c oxidase, subunit VIb polypeptide 1	protein-coding	0.000000	0.462687	
mm_2728.1	chr1	128202326	128202526	+	1	NA	NA	NA	65	NR_029543	387147		NR_029543	ENSMUSG00000065520	Mir128-1	Mirn128|Mirn128-1|Mirn128a|mir-128-1	microRNA 128-1	ncRNA	0.015000	0.348259	
mm_90127.1	chr10	117709980	117710180	+	1	NA	NA	NA	678	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.080000	0.656716	
mm_43371.1	chr5	135632588	135632788	+	1	NA	NA	NA	34	NM_146002	215160	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0.090000	0.716418	
mm_127496.1	chr15	101411029	101411229	+	1	NA	NA	NA	-1274	NM_033073	110310	Mm.486285	NM_033073	ENSMUSG00000023039	Krt7	D15Wsu77e|K7|Krt2-7	keratin 7	protein-coding	0.015000	0.577114	
mm_40396.1	chr5	52833920	52834120	+	1	NA	NA	NA	-115	NM_024213	52206	Mm.272568	NM_024213	ENSMUSG00000029176	Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding	0.130000	0.716418	
mm_172717.1	chr8	70691685	70691885	-	1	NA	NA	NA	-5954	NM_010592	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.025000	0.582090	
mm_164081.1	chr15	4077069	4077269	+	1	NA	NA	NA	-49763	NR_028266	414066	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	0.000000	0.278607	-42(ACCTATAAAAGT,-,0.00)
mm_70054.1	chr7	142651020	142651220	-	1	NA	NA	NA	3876	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.010000	0.552239	
mm_29937.1	chr3	132655705	132655905	-	1	NA	NA	NA	25614	NM_001270430	433653		NM_001270430	ENSMUSG00000091721	Gimd1	EG433653|Gm5549	GIMAP family P-loop NTPase domain containing 1	protein-coding	0.020000	0.492537	
mm_131263.1	chr16	10827293	10827493	+	1	NA	NA	NA	-7666	NM_001162932	223970	Mm.325777	NM_001033278	ENSMUSG00000037991	Rmi2	A630055G03Rik|Gm537|Gm929	RecQ mediated genome instability 2	protein-coding	0.020000	0.467662	
mm_37485.1	chr4	123572976	123573176	-	1	NA	NA	NA	-43344	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.010000	0.512438	
mm_4531.1	chr1	175698456	175698656	+	1	NA	NA	NA	-37	NM_029453	75820	Mm.50361	NM_029453	ENSMUSG00000026523	Wdr64	4930415O10Rik|4930511H01Rik	WD repeat domain 64	protein-coding	0.000000	0.487562	
mm_89685.1	chr10	97565323	97565523	+	1	NA	NA	NA	-78	NM_008524	17022	Mm.18888	NM_008524	ENSMUSG00000036446	Lum	Ldc|SLRR2D	lumican	protein-coding	0.015000	0.417910	
mm_104182.1	chr11	87796328	87796528	-	1	NA	NA	NA	2644	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.020000	0.567164	
mm_4627.1	chr1	179546430	179546630	+	1	NA	NA	NA	1	NM_146105	226744	Mm.87662	NM_146105	ENSMUSG00000038949	Cnst	9630058J23Rik	consortin, connexin sorting protein	protein-coding	0.115000	0.721393	
mm_173039.1	chrX	112162656	112162856	+	1	NA	NA	NA	69236	NM_031382	83556	Mm.190608	NM_031382	ENSMUSG00000034555	Tex16	OTTMUSG00000018437	testis expressed gene 16	protein-coding	0.010000	0.407960	
mm_85437.1	chr9	104102228	104102428	-	1	NA	NA	NA	24315	NM_145700	252837	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	0.025000	0.492537	
mm_91969.1	chr10	61432629	61432829	-	1	NA	NA	NA	14757	NM_013611	18119	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0.035000	0.522388	
mm_55706.1	chr6	72958071	72958271	-	1	NA	NA	NA	61	NM_001039392	19240	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.105000	0.676617	
mm_50566.1	chr6	49047946	49048146	+	1	NA	NA	NA	11528	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.035000	0.577114	
mm_53469.1	chr6	134921099	134921299	+	1	NA	NA	NA	798	NM_009875	12576	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	0.050000	0.616915	
mm_111356.1	chr12	86990389	86990589	-	1	NA	NA	NA	-1813	NM_001080943	238331	Mm.185890	NM_001080943	ENSMUSG00000048483	Zdhhc22	Gm262	zinc finger, DHHC-type containing 22	protein-coding	0.075000	0.691542	
mm_134778.1	chr16	23977753	23977953	-	1	NA	NA	NA	10759	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.010000	0.452736	
mm_13694.1	chr2	117121000	117121200	+	1	NA	NA	NA	29	NM_033524	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.175000	0.781095	
mm_4312.1	chr1	171845610	171845810	+	1	NA	NA	NA	6013	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.393035	75(GCTTATATGAGG,+,0.00)
mm_155318.1	chrX	62283399	62283599	+	1	NA	NA	NA	0	NM_001199997	74437	Mm.85792	NM_001199996	ENSMUSG00000045330	4933402E13Rik	-	RIKEN cDNA 4933402E13 gene	protein-coding	0.010000	0.532338	
mm_128553.1	chr15	55905984	55906184	-	1	NA	NA	NA	865	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding	0.065000	0.616915	
mm_124563.1	chr14	123626944	123627144	-	1	NA	NA	NA	100	NM_177393	338370	Mm.255348	NM_177393	ENSMUSG00000000197	Nalcn	A530023G15Rik|AI849508|Vgcnl1	sodium leak channel, non-selective	protein-coding	0.070000	0.631841	
mm_125496.1	chr15	55112368	55112568	+	1	NA	NA	NA	151	NM_145470	97998	Mm.295397	NM_145470	ENSMUSG00000022419	Deptor	Depdc6	DEP domain containing MTOR-interacting protein	protein-coding	0.115000	0.701493	
mm_143774.1	chr17	81704696	81704896	-	1	NA	NA	NA	33591	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.398010	
mm_27351.1	chr3	50415971	50416171	-	1	NA	NA	NA	27542	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.432836	
mm_12637.1	chr2	74709614	74709814	+	1	NA	NA	NA	-2279	NM_010468	15434	Mm.430708	NM_010468	ENSMUSG00000079277	Hoxd3	Hox-4.1|Hox-5.5	homeobox D3	protein-coding	0.005000	0.393035	
mm_17927.1	chr2	35462379	35462579	-	1	NA	NA	NA	-1030	NM_001145821	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.120000	0.761194	
mm_137013.1	chr17	17831041	17831241	+	1	NA	NA	NA	166	NM_001162909	75202	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0.015000	0.507463	
mm_74077.1	chr8	122470104	122470304	+	1	NA	NA	NA	5860	NM_001033142	68718	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	0.040000	0.621891	
mm_43961.1	chr5	145249309	145249509	+	1	NA	NA	NA	17650	NM_028298	72611	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	0.020000	0.402985	
mm_28014.1	chr3	83043772	83043972	-	1	NA	NA	NA	5991	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.030000	0.417910	
mm_136910.1	chr17	13016638	13016838	+	1	NA	NA	NA	8899	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.020000	0.378109	
mm_105655.1	chr11	107289125	107289325	-	1	NA	NA	NA	-99844	NM_001161329	68979	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.010000	0.492537	
mm_128925.1	chr15	73986033	73986233	-	1	NA	NA	NA	-146462	NM_001033365	268816	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding	0.030000	0.577114	
mm_124319.1	chr14	103346629	103346829	-	1	NA	NA	NA	71	NM_207215	105689	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.120000	0.741294	
mm_169352.1	chr14	20982617	20982817	+	1	NA	NA	NA	53284	NM_009502	22330	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0.030000	0.472637	22(GCTCATAAAGAC,+,0.00)
mm_136636.1	chr17	5717920	5718120	+	1	NA	NA	NA	-80637	NR_045081	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.005000	0.512438	
mm_158578.1	chrX	150657028	150657228	-	1	NA	NA	NA	308	NM_019548	56191	Mm.3597	NM_019548	ENSMUSG00000025272	Tro	AA409408|Maged3|Maged3l|Tnn|Trol|magphinin	trophinin	protein-coding	0.045000	0.527363	
mm_85612.1	chr9	107606581	107606781	-	1	NA	NA	NA	411	NM_001291538	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.020000	0.601990	
mm_39488.1	chr5	20950673	20950873	+	1	NA	NA	NA	-216	NR_030699	320770	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.030000	0.442786	
mm_128649.1	chr15	59646256	59646456	-	1	NA	NA	NA	-2298	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.000000	0.457711	
mm_18286.1	chr2	52558490	52558690	-	1	NA	NA	NA	21	NM_146123	12298	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.015000	0.537313	31(CTTTTTATGCTC,+,0.00)
mm_53802.1	chr6	146850040	146850240	+	1	NA	NA	NA	30	NM_027059	69371	Mm.252733	NM_027059	ENSMUSG00000030292	Smco2	1700023A16Rik	single-pass membrane protein with coiled-coil domains 2	protein-coding	0.010000	0.567164	
mm_132742.1	chr16	44136714	44136914	+	1	NA	NA	NA	2205	NM_007508	11964	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.015000	0.452736	
mm_105870.1	chr11	114248235	114248435	-	1	NA	NA	NA	50077	NR_045930	73536	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.005000	0.517413	
mm_64790.1	chr7	6173016	6173216	-	1	NA	NA	NA	603	NM_001146024	72667	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0.045000	0.467662	
mm_33777.1	chr4	134506574	134506774	+	1	NA	NA	NA	-4325	NM_001081099	69885	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	0.015000	0.457711	
mm_63208.1	chr7	126272319	126272519	+	1	NA	NA	NA	-200	NM_145587	104175	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.185000	0.791045	
mm_34041.1	chr4	138216212	138216412	+	1	NA	NA	NA	-300	NM_001122896	15441	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	0.030000	0.587065	
mm_21208.1	chr2	155651727	155651927	-	1	NA	NA	NA	28947	NR_030757	735275		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	0.015000	0.353234	
mm_85066.1	chr9	91051005	91051205	-	1	NA	NA	NA	314694	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.005000	0.363184	
mm_70677.1	chr8	14961807	14962007	+	1	NA	NA	NA	-49118	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.005000	0.517413	
mm_150720.1	chr19	43528246	43528446	+	1	NA	NA	NA	-3741	NM_010324	14718	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.015000	0.437811	
mm_96843.1	chr11	70029978	70030178	+	1	NA	NA	NA	11473	NM_007864	13385	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs, large homolog 4 (Drosophila)	protein-coding	0.020000	0.532338	
mm_92734.1	chr10	80906333	80906533	-	1	NA	NA	NA	-21	NM_001347140	16907	Mm.7362	NM_010722	ENSMUSG00000062075	Lmnb2	-	lamin B2	protein-coding	0.020000	0.606965	
mm_75512.1	chr8	54529308	54529508	-	1	NA	NA	NA	590	NM_029701	76687	Mm.86437	NM_029701	ENSMUSG00000054408	Spcs3	1810011E08Rik|SPC22/23	signal peptidase complex subunit 3 homolog (S. cerevisiae)	protein-coding	0.040000	0.626866	
mm_96480.1	chr11	67683419	67683619	+	1	NA	NA	NA	-11807	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.015000	0.577114	
mm_121975.1	chr14	25768738	25768938	-	1	NA	NA	NA	18	NM_001101433	71918	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.095000	0.701493	
mm_8036.1	chr1	135167518	135167718	-	1	NA	NA	NA	63	NM_134438	171469	Mm.272290	NM_134438	ENSMUSG00000026424	Gpr37l1	AW047233|CAG-18|D0Kist8	G protein-coupled receptor 37-like 1	protein-coding	0.030000	0.636816	
mm_35995.1	chr4	55533227	55533427	-	1	NA	NA	NA	-852	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.055000	0.522388	
mm_79801.1	chr9	64139175	64139375	+	1	NA	NA	NA	22128	NM_145835	235435	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	0.030000	0.462687	
mm_111748.1	chr12	103948064	103948264	-	1	NA	NA	NA	8733	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	0.005000	0.477612	
mm_56729.1	chr6	115676425	115676625	-	1	NA	NA	NA	110	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.105000	0.676617	
mm_38925.1	chr4	150010895	150011095	-	1	NA	NA	NA	-1972	NM_173371	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.015000	0.487562	
mm_153574.1	chr19	43112312	43112512	-	1	NA	NA	NA	275943	NM_001081257	545291	Mm.442200	NM_001081257	ENSMUSG00000074852	Hpse2	Gm968|Hpa2	heparanase 2	protein-coding	0.005000	0.348259	-83(GTTTTTATACTC,+,0.00)
mm_25579.1	chr3	116861819	116862019	+	1	NA	NA	NA	239	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.040000	0.482587	
mm_163901.1	chr14	29669335	29669535	+	1	NA	NA	NA	52429	NM_009785	12294	Mm.386754	NM_009785	ENSMUSG00000021991	Cacna2d3	Cacnad3|alapha2delta3	calcium channel, voltage-dependent, alpha2/delta subunit 3	protein-coding	0.000000	0.363184	
mm_105826.1	chr11	113171851	113172051	-	1	NA	NA	NA	29887	NR_015556	72386	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.015000	0.452736	
mm_148164.1	chr18	77732632	77732832	-	1	NA	NA	NA	18548	NR_027978	67640	Mm.482903	NM_026289		4930465K10Rik	-	RIKEN cDNA 4930465K10 gene	ncRNA	0.030000	0.631841	
mm_26994.1	chr3	25790516	25790716	-	1	NA	NA	NA	362691	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.010000	0.417910	
mm_105101.1	chr11	100955111	100955311	-	1	NA	NA	NA	15406	NM_008986	19285	Mm.21864	NM_008986	ENSMUSG00000004044	Ptrf	2310075E07Rik|AW546441|Cav-p60|Cavin	polymerase I and transcript release factor	protein-coding	0.000000	0.442786	
mm_85646.1	chr9	107656079	107656279	-	1	NA	NA	NA	11220	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.015000	0.582090	
mm_111717.1	chr12	103730190	103730390	-	1	NA	NA	NA	7899	NM_009244	20701	Mm.439692	NM_009244	ENSMUSG00000071178	Serpina1b	D12Ucla2|Dom2|PI2|Spi1-2	serine (or cysteine) preptidase inhibitor, clade A, member 1B	protein-coding	0.030000	0.557214	
mm_136572.1	chr17	3453166	3453366	+	1	NA	NA	NA	-29049	NM_001286758	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.030000	0.457711	
mm_30200.1	chr3	144720125	144720325	-	1	NA	NA	NA	110	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.180000	0.796020	
mm_103218.1	chr11	70655072	70655272	-	1	NA	NA	NA	-522	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.115000	0.691542	
mm_163381.1	chr12	52504214	52504414	+	1	NA	NA	NA	-11763	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0.170000	0.766169	
mm_114677.1	chr13	80885655	80885855	+	1	NA	NA	NA	2333	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.110000	0.726368	
mm_113126.1	chr13	24603148	24603348	+	1	NA	NA	NA	1519	NR_024599	76024	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347|OTTMUSG00000000601|OTTMUSG00000000602	X-linked lymphocyte-regulated 5 pseudogene	pseudo	0.020000	0.532338	-35(GCCTATAAATAA,-,0.00)
mm_93680.1	chr10	117792548	117792748	-	1	NA	NA	NA	57	NM_134010	103468	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.085000	0.636816	
mm_24534.1	chr3	93279384	93279584	+	1	NA	NA	NA	-40265	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.015000	0.407960	
mm_146502.1	chr18	3299420	3299620	-	1	NA	NA	NA	36	NM_001110853	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.005000	0.437811	
mm_139507.1	chr17	56304169	56304369	+	1	NA	NA	NA	-44	NM_001111078	18140	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	0.090000	0.696517	43(GGGTCTTTAAAG,-,0.00),44(GGTCTTTAAAGC,-,0.00),45(GTCTTTAAAGCG,+,0.00),46(TCTTTAAAGCGC,+,0.00)
mm_110667.1	chr12	64963269	64963469	-	1	NA	NA	NA	2167	NM_025707	66689	Mm.248678	NM_025707	ENSMUSG00000020948	Klhl28	2810440N09Rik|4122402F11Rik|4931401E10Rik|Btbd5	kelch-like 28	protein-coding	0.000000	0.358209	
mm_86783.1	chr10	20170995	20171195	+	1	NA	NA	NA	22175	NM_001198635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.010000	0.457711	
mm_95505.1	chr11	51916813	51917013	+	1	NA	NA	NA	-50718	NM_029976	52626	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.030000	0.537313	
mm_172449.1	chr7	32298425	32298625	+	1	NA	NA	NA	28720	NM_001281508	668379	Mm.380094	NM_001281508	ENSMUSG00000097982	Scgb2b12	Abpbg12|EG668379|Gm9138	secretoglobin, family 2B, member 12	protein-coding	0.015000	0.457711	
mm_64954.1	chr7	16476679	16476879	-	1	NA	NA	NA	1	NM_008718	18142	Mm.145821	NM_008718	ENSMUSG00000001988	Npas1	MOP5|bHLHe11	neuronal PAS domain protein 1	protein-coding	0.105000	0.716418	
mm_132916.1	chr16	49699149	49699349	+	1	NA	NA	NA	-45	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.085000	0.686567	
mm_9048.1	chr1	167284959	167285159	-	1	NA	NA	NA	68	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.100000	0.721393	
mm_166626.1	chr6	78371803	78372003	-	1	NA	NA	NA	1018	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.015000	0.487562	
mm_120103.1	chr14	59178788	59178988	+	1	NA	NA	NA	-139	NM_001004158	380907	Mm.81009	NM_001004158	ENSMUSG00000053868	Gm5142	EG380907	predicted gene 5142	protein-coding	0.000000	0.512438	
mm_90293.1	chr10	125308901	125309101	+	1	NA	NA	NA	19534	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.005000	0.447761	76(ACCCATAAAAAG,-,0.00),78(CCATAAAAAGCA,+,0.00)
mm_8154.1	chr1	136929205	136929405	-	1	NA	NA	NA	24325	NM_001159769	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	0.000000	0.383085	
mm_65700.1	chr7	28377138	28377338	-	1	NA	NA	NA	1990	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.005000	0.487562	
mm_55550.1	chr6	71225366	71225566	-	1	NA	NA	NA	25578	NM_017399	14080	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0.030000	0.557214	
mm_40254.1	chr5	38220539	38220739	+	1	NA	NA	NA	157	NM_025281	17089	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	0.085000	0.671642	
mm_98972.1	chr11	98685810	98686010	+	1	NA	NA	NA	3356	NM_009439	22123	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0.035000	0.547264	
mm_106457.1	chr11	120020075	120020275	-	1	NA	NA	NA	-5313	NR_029767	723844		NR_029767	ENSMUSG00000065600	Mir338	Mirn338|mir-338|mmu-mir-338	microRNA 338	ncRNA	0.020000	0.621891	
mm_170524.1	chr19	33456173	33456373	-	1	NA	NA	NA	61497	NM_001323386	628236		NM_001323386	ENSMUSG00000079344	Lipo4	Gm6857	lipase, member O4	protein-coding	0.015000	0.512438	
mm_56641.1	chr6	113326560	113326760	-	1	NA	NA	NA	-316	NM_010957	18294	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0.065000	0.646766	
mm_141960.1	chr17	35118476	35118676	-	1	NA	NA	NA	2716	NM_001303476	13001	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	0.035000	0.542289	
mm_99874.1	chr11	109413818	109414018	+	1	NA	NA	NA	-12028	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.025000	0.592040	
mm_109389.1	chr12	109741550	109741750	+	1	NA	NA	NA	-759	NR_030263	723941		NR_030263	ENSMUSG00000076052	Mir541	Mirn541|mir-541|mmu-mir-541	microRNA 541	ncRNA	0.005000	0.447761	
mm_151451.1	chr19	57747507	57747707	+	1	NA	NA	NA	136573	NM_181415	226255	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0.015000	0.293532	
mm_123484.1	chr14	66009055	66009255	-	1	NA	NA	NA	55	NM_178747	268756	Mm.26207	NM_178747	ENSMUSG00000034450	Gulo	5730581M22|AU018375|BC028822|GLO|LGO|sfx|unh|unhip	gulonolactone (L-) oxidase	protein-coding	0.030000	0.572139	
mm_60833.1	chr7	45717921	45718121	+	1	NA	NA	NA	-19	NM_001172561	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.120000	0.621891	
mm_34131.1	chr4	139280446	139280646	+	1	NA	NA	NA	30154	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.030000	0.567164	
mm_63834.1	chr7	135534883	135535083	+	1	NA	NA	NA	-2841	NM_011212	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.000000	0.592040	
mm_17691.1	chr2	32332017	32332217	-	1	NA	NA	NA	13657	NR_029811	387239		NR_029811	ENSMUSG00000092807	Mir199b	Mirn199b|mir-199b	microRNA 199b	ncRNA	0.010000	0.507463	
mm_63146.1	chr7	123214773	123214973	+	1	NA	NA	NA	7	NM_146198	233836	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.010000	0.577114	
mm_151961.1	chr19	5801481	5801681	-	1	NA	NA	NA	1091	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.343284	
mm_43362.1	chr5	135230197	135230397	+	1	NA	NA	NA	20750	NM_010246	14371	Mm.6256	NM_010246	ENSMUSG00000049551	Fzd9	mfz9	frizzled class receptor 9	protein-coding	0.015000	0.487562	
mm_133557.1	chr16	91387973	91388173	+	1	NA	NA	NA	15290	NM_001110498	15976	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.055000	0.537313	
mm_94087.1	chr10	128498561	128498761	-	1	NA	NA	NA	24	NM_172259	216459	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	0.045000	0.626866	
mm_87051.1	chr10	28822966	28823166	+	1	NA	NA	NA	100441	NR_033601	114676	Mm.390292	NR_033601		4930519F09Rik	-	pyruvate dehydrogenase E1 alpha 1 pseudogene	pseudo	0.000000	0.343284	
mm_74212.1	chr8	123896155	123896355	+	1	NA	NA	NA	-1480	NM_009606	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.010000	0.537313	
mm_106055.1	chr11	116110175	116110375	-	1	NA	NA	NA	-40	NM_172570	217333	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.100000	0.756219	
mm_164321.1	chr16	4037279	4037479	+	1	NA	NA	NA	234	NM_010061	13419	Mm.291048	NM_010061	ENSMUSG00000005980	Dnase1	AI788650|DNaseI|Dnl1	deoxyribonuclease I	protein-coding	0.010000	0.512438	
mm_115440.1	chr13	117602408	117602608	+	1	NA	NA	NA	188	NM_010408	15165	Mm.343429	NM_010408	ENSMUSG00000021730	Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding	0.165000	0.815920	
mm_151392.1	chr19	56425629	56425829	+	1	NA	NA	NA	28600	NM_007611	12369	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.030000	0.592040	
mm_47642.1	chr5	125388771	125388971	-	1	NA	NA	NA	1146	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.020000	0.487562	
mm_70229.1	chr7	145284286	145284486	-	1	NA	NA	NA	-375	NR_132642	233979	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.005000	0.452736	-49(CGTCTTATAAGG,-,0.00),-47(TCTTATAAGGCT,+,0.00)
mm_73248.1	chr8	104264395	104264595	+	1	NA	NA	NA	13634	NM_001286383	75458	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	0.045000	0.616915	
mm_106811.1	chr12	7379798	7379998	+	1	NA	NA	NA	432	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA	0.000000	0.368159	
mm_168782.1	chr12	18514344	18514544	+	1	NA	NA	NA	-66	NM_001033157	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.125000	0.746269	
mm_126079.1	chr15	77800674	77800874	+	1	NA	NA	NA	41401	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.000000	0.547264	
mm_75447.1	chr8	47674752	47674952	-	1	NA	NA	NA	307	NM_023503	69260	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.120000	0.746269	
mm_13768.1	chr2	118598118	118598318	+	1	NA	NA	NA	7	NM_009773	12236	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	0.085000	0.572139	
mm_65193.1	chr7	19696630	19696830	-	1	NA	NA	NA	1668	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.105000	0.701493	
mm_172927.1	chr9	71120464	71120664	-	1	NA	NA	NA	42069	NM_001271843	64008	Mm.449427	NM_022026	ENSMUSG00000032204	Aqp9	1700020I22Rik|AI266899|AQP-9	aquaporin 9	protein-coding	0.015000	0.492537	
mm_156538.1	chrX	151168685	151168885	+	1	NA	NA	NA	-29293	NM_001271679	279561	Mm.441474	NM_001271678	ENSMUSG00000041245	Wnk3	Prkwnk3|Wnk3-ps	WNK lysine deficient protein kinase 3	protein-coding	0.055000	0.626866	
mm_38763.1	chr4	147903669	147903869	-	1	NA	NA	NA	929	NM_001285923	170731	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0.010000	0.497512	
mm_12658.1	chr2	75582348	75582548	+	1	NA	NA	NA	-76811	NM_146130	229279	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.005000	0.427861	48(CACTTTAAAAGA,-,0.00),49(ACTTTAAAAGAC,+,0.00)
mm_95384.1	chr11	49203395	49203595	+	1	NA	NA	NA	-5	NM_001024846	22720	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0.130000	0.736318	
mm_125135.1	chr15	30457569	30457769	+	1	NA	NA	NA	285076	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.020000	0.457711	
mm_55818.1	chr6	83053648	83053848	-	1	NA	NA	NA	-773	NR_125891	11993	Mm.386752	NM_007517	ENSMUSG00000068328	Aup1	AA589454	ancient ubiquitous protein 1	protein-coding	0.065000	0.582090	
mm_27837.1	chr3	79144308	79144508	-	1	NA	NA	NA	479	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.457711	
mm_107559.1	chr12	41498838	41499038	+	1	NA	NA	NA	-12881	NM_010733	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.000000	0.437811	
mm_151056.1	chr19	47178959	47179159	+	1	NA	NA	NA	239	NM_021360	18011	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.190000	0.815920	
mm_3481.1	chr1	150105481	150105681	+	1	NA	NA	NA	5550	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.467662	
mm_2131.1	chr1	88055393	88055593	+	1	NA	NA	NA	82	NM_201641	394430	Mm.300095	NM_201641	ENSMUSG00000090165	Ugt1a10	A13|Ugt1a13	UDP glycosyltransferase 1 family, polypeptide A10	protein-coding	0.005000	0.517413	
mm_158102.1	chrX	101794308	101794508	-	1	NA	NA	NA	-54977	NM_001163610	100042480	Mm.232	NM_001163610	ENSMUSG00000079481	Nhsl2	1110062M06Rik|6430511F03|AI225852|AW488865|EG621083|ENSMUSG00000073037|Gm10456	NHS-like 2	protein-coding	0.115000	0.721393	
mm_51213.1	chr6	71352874	71353074	+	1	NA	NA	NA	-20453	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.010000	0.492537	17(CTTTCTAAAAGC,-,0.00)
mm_135120.1	chr16	35841391	35841591	-	1	NA	NA	NA	29891	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.010000	0.422886	
mm_173159.1	chrX	36864060	36864260	-	1	NA	NA	NA	86	NM_029951	77644	Mm.290704	NM_029951	ENSMUSG00000006423	C330007P06Rik	-	RIKEN cDNA C330007P06 gene	protein-coding	0.100000	0.567164	
mm_128375.1	chr15	42676652	42676852	-	1	NA	NA	NA	225	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.030000	0.412935	
mm_168047.1	chrY	90811611	90811811	+	1	NA	NA	NA	26269	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.010000	0.482587	
mm_98239.1	chr11	88155736	88155936	+	1	NA	NA	NA	-13729	NM_001172099	103841	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	0.015000	0.537313	
mm_87304.1	chr10	42583699	42583899	+	1	NA	NA	NA	-211	NM_152229	21907	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	0.070000	0.537313	
mm_106453.1	chr11	120017081	120017281	-	1	NA	NA	NA	-2319	NR_029767	723844		NR_029767	ENSMUSG00000065600	Mir338	Mirn338|mir-338|mmu-mir-338	microRNA 338	ncRNA	0.020000	0.626866	
mm_103744.1	chr11	80142043	80142243	-	1	NA	NA	NA	10	NM_183275	68550	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0.055000	0.587065	
mm_82591.1	chr9	21238971	21239171	-	1	NA	NA	NA	261	NM_016679	50868	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.150000	0.771144	
mm_47685.1	chr5	129007425	129007625	-	1	NA	NA	NA	1047	NM_001286034	13852	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	0.005000	0.477612	
mm_81653.1	chr9	110960365	110960565	+	1	NA	NA	NA	8920	NM_028838	74249	Mm.307615	NM_028838	ENSMUSG00000032495	Lrrc2	2400002D05Rik|4933431K03Rik	leucine rich repeat containing 2	protein-coding	0.010000	0.487562	
mm_133936.1	chr16	3884354	3884554	-	1	NA	NA	NA	-165	NM_029090	74763	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|Nat15	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0.105000	0.696517	
mm_120448.1	chr14	65968496	65968696	+	1	NA	NA	NA	113	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.055000	0.616915	15(CGCTATAAATAG,-,0.00)
mm_35025.1	chr4	4016391	4016591	-	1	NA	NA	NA	3172	NM_181989	242285	Mm.98096	NM_181989	ENSMUSG00000028236	Sdr16c5	Rdhe2|Scdr9	short chain dehydrogenase/reductase family 16C, member 5	protein-coding	0.005000	0.442786	42(TTGCTTTAAAGG,-,0.00),44(GCTTTAAAGGTG,+,0.00)
mm_17644.1	chr2	31460292	31460492	-	1	NA	NA	NA	-9878	NM_007494	11898	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.075000	0.631841	
mm_125293.1	chr15	36792578	36792778	+	1	NA	NA	NA	-1746	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.085000	0.696517	
mm_6690.1	chr1	80709408	80709608	-	1	NA	NA	NA	-44156	NM_001285927	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.020000	0.507463	
mm_107252.1	chr12	28649525	28649725	+	1	NA	NA	NA	23	NM_001286865	19819	Mm.10152	NM_011275	ENSMUSG00000020630	Rnaseh1	-	ribonuclease H1	protein-coding	0.135000	0.686567	
mm_138885.1	chr17	43389452	43389652	+	1	NA	NA	NA	86	NM_001081178	224792	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	0.025000	0.542289	
mm_101320.1	chr11	22859540	22859740	-	1	NA	NA	NA	95	NM_016888	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.155000	0.776119	
mm_1091.1	chr1	59684886	59685086	+	1	NA	NA	NA	-20	NM_018868	55989	Mm.220367	NM_018868	ENSMUSG00000026020	Nop58	MSSP|Nol5|SIK|nop5	NOP58 ribonucleoprotein	protein-coding	0.095000	0.577114	
mm_97810.1	chr11	82962021	82962221	+	1	NA	NA	NA	-1440	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.015000	0.452736	
mm_92115.1	chr10	63203843	63204043	-	1	NA	NA	NA	9	NM_182992	68802	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	0.035000	0.512438	
mm_130037.1	chr15	88978875	88979075	-	1	NA	NA	NA	-422	NM_133241	170790	Mm.32780	NM_133241	ENSMUSG00000035805	Mlc1	AW048630|BB074274|Kiaa0027-hp|LVM|MLC|VL|WKL1|mKIAA0027	megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	protein-coding	0.020000	0.472637	83(CGGCTTAAAAAG,-,0.00),85(GCTTAAAAAGAT,+,0.00)
mm_160766.1	chr10	95415418	95415618	-	1	NA	NA	NA	-34	NM_001168656	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.025000	0.547264	
mm_17492.1	chr2	28615241	28615441	-	1	NA	NA	NA	6641	NM_008114	14582	Mm.373385	NM_008114	ENSMUSG00000026815	Gfi1b	Gfi-1B	growth factor independent 1B	protein-coding	0.025000	0.567164	
mm_30267.1	chr3	146770489	146770689	-	1	NA	NA	NA	104	NM_001164199	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.035000	0.482587	18(GCATTTAGGCGC,+,0.00)
mm_107308.1	chr12	31073887	31074087	+	1	NA	NA	NA	19	NM_027828	104943	Mm.248938	NM_027828	ENSMUSG00000036136	Fam110c	9030611O19Rik|AU019489	family with sequence similarity 110, member C	protein-coding	0.085000	0.651741	
mm_152394.1	chr19	10525090	10525290	-	1	NA	NA	NA	19	NM_025333	66072	Mm.180063	NM_025333	ENSMUSG00000024668	Sdhaf2	0610038F07Rik|AA407634|AW049997	succinate dehydrogenase complex assembly factor 2	protein-coding	0.115000	0.681592	
mm_159348.1	chr3	65188006	65188206	+	1	NA	NA	NA	3	NM_001289450	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.005000	0.343284	
mm_311.1	chr1	24195151	24195351	+	1	NA	NA	NA	48	NM_001290691	12839	Mm.154662	NM_007740	ENSMUSG00000026147	Col9a1	Col9a-1	collagen, type IX, alpha 1	protein-coding	0.015000	0.547264	
mm_91704.1	chr10	44022174	44022374	-	1	NA	NA	NA	-17428	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.015000	0.507463	
mm_23459.1	chr3	60472636	60472836	+	1	NA	NA	NA	-94	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.010000	0.378109	
mm_25676.1	chr3	122044381	122044581	+	1	NA	NA	NA	21	NM_007378	11304	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0.045000	0.582090	
mm_46970.1	chr5	115158242	115158442	-	1	NA	NA	NA	-166	NM_175403	109154	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0.110000	0.716418	
mm_39210.1	chr4	156050691	156050891	-	1	NA	NA	NA	26	NM_029264	330010	Mm.440232	NM_029264	ENSMUSG00000029074	Ttll10	4833412E22Rik|4930595O22Rik|AU022799|BC042775|Ttll5	tubulin tyrosine ligase-like family, member 10	protein-coding	0.000000	0.512438	
mm_154180.1	chr19	58792703	58792903	-	1	NA	NA	NA	1611	NM_026208	67507	Mm.27027	NM_026208	ENSMUSG00000026931	1700019N19Rik	-	RIKEN cDNA 1700019N19 gene	protein-coding	0.010000	0.497512	
mm_1854.1	chr1	84362567	84362767	+	1	NA	NA	NA	-78022	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.000000	0.462687	-32(GTCTATTTAAGA,-,0.00),4(CACTTTATAAGC,-,0.00)
mm_64940.1	chr7	16312317	16312517	-	1	NA	NA	NA	2834	NM_133234	170770	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.085000	0.751244	
mm_52522.1	chr6	115581004	115581204	+	1	NA	NA	NA	11472	NM_001101431	70291	Mm.133694	NM_001101431	ENSMUSG00000068011	Mkrn2os	2510049J12Rik	makorin, ring finger protein 2, opposite strand	protein-coding	0.005000	0.472637	
mm_147072.1	chr18	35258884	35259084	-	1	NA	NA	NA	-43960	NM_178005	107065	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0.030000	0.577114	
mm_352.1	chr1	32172652	32172852	+	1	NA	NA	NA	-54	NM_133235	170771	Mm.336594	NM_133235	ENSMUSG00000026058	Khdrbs2	6330586C16Rik|Slim1|Slm-1|Slm1|mSLM-1	KH domain containing, RNA binding, signal transduction associated 2	protein-coding	0.110000	0.726368	
mm_94905.1	chr11	29373502	29373702	+	1	NA	NA	NA	-570	NM_176841	108686	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0.125000	0.721393	
mm_1681.1	chr1	74855110	74855310	+	1	NA	NA	NA	181	NM_009872	12570	Mm.153833	NM_009872	ENSMUSG00000090071	Cdk5r2	B230310J22Rik|p39	cyclin-dependent kinase 5, regulatory subunit 2 (p39)	protein-coding	0.130000	0.731343	
mm_159350.1	chr3	72966678	72966878	-	1	NA	NA	NA	88	NM_001081137	69983	Mm.261054	NM_001081137	ENSMUSG00000027790	Sis	2010204N08Rik|SI|Si-s	sucrase isomaltase (alpha-glucosidase)	protein-coding	0.015000	0.432836	
mm_97270.1	chr11	75765268	75765468	+	1	NA	NA	NA	-30441	NR_136933	102641247	Mm.411386	NR_136932		Gm12339	OTTMUSG00000006218	predicted gene 12339	ncRNA	0.035000	0.522388	
mm_83209.1	chr9	41988154	41988354	-	1	NA	NA	NA	136035	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.015000	0.452736	
mm_93479.1	chr10	111993496	111993696	-	1	NA	NA	NA	3668	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.010000	0.412935	
mm_73904.1	chr8	119446835	119447035	+	1	NA	NA	NA	216	NM_054095	117148	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	0.175000	0.870647	
mm_63674.1	chr7	130525626	130525826	+	1	NA	NA	NA	-5357	NM_001271343	11907	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0.015000	0.457711	
mm_55037.1	chr6	48987361	48987561	-	1	NA	NA	NA	600	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.025000	0.552239	
mm_149530.1	chr19	12461035	12461235	+	1	NA	NA	NA	356	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.010000	0.442786	
mm_41510.1	chr5	92371627	92371827	+	1	NA	NA	NA	-8431	NR_038116	56066	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0.035000	0.532338	
mm_38673.1	chr4	144892230	144892430	-	1	NA	NA	NA	-497	NM_001172424	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.095000	0.676617	
mm_60147.1	chr7	38186142	38186342	+	1	NA	NA	NA	2455	NM_028166	72244	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0.000000	0.447761	
mm_100300.1	chr11	117849129	117849329	+	1	NA	NA	NA	-8	NM_001012273	11799	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0.125000	0.721393	
mm_57420.1	chr6	124913772	124913972	-	1	NA	NA	NA	-2167	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.025000	0.606965	
mm_33834.1	chr4	135685945	135686145	+	1	NA	NA	NA	-412	NM_174851	242700	Mm.259623	NM_174851	ENSMUSG00000062157	Ifnlr1	CRF2-12|Il28ra	interferon lambda receptor 1	protein-coding	0.045000	0.492537	
mm_152889.1	chr19	24859303	24859503	-	1	NA	NA	NA	2439	NM_175013	226041	Mm.105222	NM_175013	ENSMUSG00000041731	Pgm5	4833423B07|9530034F03Rik|D830025G17|aciculin	phosphoglucomutase 5	protein-coding	0.010000	0.557214	
mm_172905.1	chr9	58582873	58583073	+	1	NA	NA	NA	733	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.020000	0.552239	
mm_22270.1	chr2	178505965	178506165	-	1	NA	NA	NA	75550	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.010000	0.522388	
mm_53302.1	chr6	129180522	129180722	+	1	NA	NA	NA	7	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.010000	0.462687	
mm_8104.1	chr1	135850662	135850862	-	1	NA	NA	NA	9901	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.015000	0.572139	
mm_40932.1	chr5	76588695	76588895	+	1	NA	NA	NA	-2919	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.160000	0.751244	
mm_66051.1	chr7	30729431	30729631	-	1	NA	NA	NA	3	NM_027215	69804	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	0.115000	0.701493	
mm_114413.1	chr13	64363700	64363900	+	1	NA	NA	NA	6720	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.005000	0.353234	
mm_98511.1	chr11	94952262	94952462	+	1	NA	NA	NA	-15231	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.025000	0.587065	
mm_1316.1	chr1	65080423	65080623	+	1	NA	NA	NA	1767	NM_144761	12965	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	0.015000	0.502488	
mm_162652.1	chr10	3758296	3758496	+	1	NA	NA	NA	18019	NM_001159942	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.000000	0.482587	56(GCTTATAAATGC,+,0.00),56(GCTTATAAATGC,-,0.00)
mm_12340.1	chr2	69722954	69723154	+	1	NA	NA	NA	-34	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.135000	0.761194	
mm_87960.1	chr10	63243908	63244108	+	1	NA	NA	NA	211	NM_026101	67345	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0.110000	0.686567	
mm_19830.1	chr2	112202956	112203156	-	1	NA	NA	NA	-36785	NM_207206	99010	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.015000	0.452736	
mm_89014.1	chr10	81651552	81651752	+	1	NA	NA	NA	2583	NM_001142963	100233208	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	ENSMUSG00000074860	predicted gene 10778	protein-coding	0.020000	0.467662	
mm_145025.1	chr18	39024062	39024262	+	1	NA	NA	NA	31017	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.005000	0.442786	
mm_61179.1	chr7	60155602	60155802	+	1	NA	NA	NA	-15483	NM_001082962	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding	0.090000	0.626866	
mm_118885.1	chr14	26357442	26357642	+	1	NA	NA	NA	-5	NR_038005	71106	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.015000	0.651741	35(CCTCTAAGAGTC,+,0.00)
mm_146164.1	chr18	75183754	75183954	+	1	NA	NA	NA	113463	NR_045394	100503117	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.005000	0.432836	
mm_148533.1	chr19	4594249	4594449	+	1	NA	NA	NA	30	NM_008797	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.020000	0.577114	
mm_131854.1	chr16	23067624	23067824	+	1	NA	NA	NA	9424	NM_001102412	16644	Mm.2160	NM_023125	ENSMUSG00000022875	Kng1	Kng	kininogen 1	protein-coding	0.015000	0.427861	
mm_131653.1	chr16	20538135	20538335	+	1	NA	NA	NA	2755	NM_009679	11773	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.010000	0.517413	
mm_127469.1	chr15	101272704	101272904	+	1	NA	NA	NA	5958	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.035000	0.522388	
mm_72083.1	chr8	71573897	71574097	+	1	NA	NA	NA	5070	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.020000	0.502488	
mm_60029.1	chr7	30973740	30973940	+	1	NA	NA	NA	36	NR_038860	76415	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.050000	0.606965	
mm_127859.1	chr15	8350783	8350983	-	1	NA	NA	NA	93580	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.035000	0.462687	
mm_118565.1	chr14	18271050	18271250	+	1	NA	NA	NA	14	NM_023526	69721	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	0.065000	0.641791	
mm_71304.1	chr8	41315920	41316120	+	1	NA	NA	NA	58677	NM_019734	11886	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	0.010000	0.383085	
mm_133232.1	chr16	77013638	77013838	+	1	NA	NA	NA	-331	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.155000	0.805970	
mm_15042.1	chr2	152821175	152821375	+	1	NA	NA	NA	9442	NM_001289716	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.015000	0.537313	
mm_39176.1	chr4	155774469	155774669	-	1	NA	NA	NA	-8	NM_147776	246228	Mm.26515	NM_147776	ENSMUSG00000042116	Vwa1	4932416A11Rik|WARP	von Willebrand factor A domain containing 1	protein-coding	0.070000	0.636816	
mm_85278.1	chr9	99568559	99568759	-	1	NA	NA	NA	240	NM_001166138	74125	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	0.095000	0.696517	
mm_69059.1	chr7	126897248	126897448	-	1	NA	NA	NA	930	NM_026827	68742	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0.010000	0.407960	
mm_117781.1	chr13	97022219	97022419	-	1	NA	NA	NA	12043	NM_025585	66479	Mm.390629	NM_025585	ENSMUSG00000052075	1700029F12Rik	-	RIKEN cDNA 1700029F12 gene	protein-coding	0.005000	0.467662	89(CCATATATAACC,+,0.00)
mm_75333.1	chr8	43304575	43304775	-	1	NA	NA	NA	2334	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.000000	0.288557	18(CTGTATAAATGC,-,0.00)
mm_94112.1	chr10	128626356	128626556	-	1	NA	NA	NA	50	NM_013765	27370	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0.080000	0.577114	-79(TACTATATAAGC,-,0.00)
mm_44163.1	chr5	150673811	150674011	+	1	NA	NA	NA	84	NM_001346503	100710	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	0.140000	0.736318	
mm_107986.1	chr12	73086385	73086585	+	1	NA	NA	NA	26760	NM_011382	20474	Mm.249575	NM_011382	ENSMUSG00000034460	Six4	AI047561|AREC3|TrexBF	sine oculis-related homeobox 4	protein-coding	0.015000	0.462687	
mm_160245.1	chr7	105056311	105056511	+	1	NA	NA	NA	163	NM_146358	258355	Mm.377452	NM_146358	ENSMUSG00000073914	Olfr677	MOR32-11	olfactory receptor 677	protein-coding	0.005000	0.402985	
mm_169105.1	chr13	44869539	44869739	-	1	NA	NA	NA	132457	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.070000	0.542289	40(CCCCAGAAAAGG,-,0.00)
mm_107425.1	chr12	35135896	35136096	+	1	NA	NA	NA	88807	NM_001014973	217463	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0.000000	0.378109	
mm_30085.1	chr3	138131295	138131495	-	1	NA	NA	NA	-18	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	0.020000	0.507463	
mm_111732.1	chr12	103773536	103773736	-	1	NA	NA	NA	-3	NM_009246	20703	Mm.439695	NM_009246	ENSMUSG00000071177	Serpina1d	AI118301|Dom4|PI4|Spi1-4	serine (or cysteine) peptidase inhibitor, clade A, member 1D	protein-coding	0.015000	0.527363	
mm_67392.1	chr7	79846338	79846538	-	1	NA	NA	NA	-4086	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.005000	0.532338	
mm_20752.1	chr2	140389635	140389835	-	1	NA	NA	NA	-25	NM_001033296	228684	Mm.486585	NM_001033296	ENSMUSG00000074764	Sel1l2	Gm118	sel-1 suppressor of lin-12-like 2 (C. elegans)	protein-coding	0.005000	0.497512	
mm_157753.1	chrX	73494548	73494748	-	1	NA	NA	NA	-8438	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.010000	0.537313	
mm_104013.1	chr11	85235001	85235201	-	1	NA	NA	NA	19	NM_025825	66884	Mm.271997	NM_025825	ENSMUSG00000018481	Appbp2	1300003O07Rik|AI465480|PAT1	amyloid beta precursor protein (cytoplasmic tail) binding protein 2	protein-coding	0.140000	0.671642	
mm_36398.1	chr4	77788469	77788669	-	1	NA	NA	NA	423326	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.005000	0.333333	-68(CTTTATATACAC,+,0.00)
mm_132465.1	chr16	36307899	36308099	+	1	NA	NA	NA	26333	NM_001001332	100038854	Mm.383561	NM_001001332	ENSMUSG00000079594	BC117090	Gm1975	cDNA sequence BC1179090	protein-coding	0.000000	0.427861	-36(CCTTTAAAACCC,+,0.00)
mm_56152.1	chr6	87843725	87843925	-	1	NA	NA	NA	-5066	NM_133934	57905	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	0.010000	0.393035	
mm_56449.1	chr6	97606374	97606574	-	1	NA	NA	NA	11183	NM_145148	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.020000	0.477612	
mm_104628.1	chr11	97315528	97315728	-	1	NA	NA	NA	-88	NM_025927	67036	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.085000	0.611940	
mm_137593.1	chr17	28097917	28098117	+	1	NA	NA	NA	-17378	NM_001085555	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.025000	0.616915	
mm_66962.1	chr7	62464329	62464529	-	1	NA	NA	NA	81	NM_013788	27412	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	0.125000	0.766169	
mm_145498.1	chr18	60390563	60390763	+	1	NA	NA	NA	14634	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.010000	0.417910	
mm_141341.1	chr17	28552432	28552632	-	1	NA	NA	NA	3045	NM_001034871	328788	Mm.99400	NM_001034871	ENSMUSG00000024224	Clpsl2	Gm749	colipase-like 2	protein-coding	0.025000	0.537313	
mm_149059.1	chr19	8839382	8839582	+	1	NA	NA	NA	154	NM_008144	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.005000	0.587065	
mm_7534.1	chr1	124419798	124419998	-	1	NA	NA	NA	-374339	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.457711	
mm_16608.1	chr2	5083746	5083946	-	1	NA	NA	NA	-19908	NM_181848	71648	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0.015000	0.442786	
mm_80462.1	chr9	78051843	78052043	+	1	NA	NA	NA	-15	NM_008103	14531	Mm.1400	NM_008103	ENSMUSG00000023333	Gcm1	GCMa|Gcm-rs2|Gcm1-rs1|glide	glial cells missing homolog 1 (Drosophila)	protein-coding	0.015000	0.507463	
mm_23825.1	chr3	81036888	81037088	+	1	NA	NA	NA	572	NM_019971	54635	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C	platelet-derived growth factor, C polypeptide	protein-coding	0.085000	0.721393	
mm_100614.1	chr11	121519328	121519528	+	1	NA	NA	NA	-86	NM_178763	319530	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.030000	0.572139	
mm_8600.1	chr1	156034707	156034907	-	1	NA	NA	NA	10	NM_001160019	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.000000	0.417910	
mm_1312.1	chr1	65043687	65043887	+	1	NA	NA	NA	7376	NM_007777	12968	Mm.258170	NM_007777	ENSMUSG00000070870	Cryge	Cryg-2|Cryg-6|DGcry-2|Elo	crystallin, gamma E	protein-coding	0.010000	0.497512	
mm_3597.1	chr1	151530648	151530848	+	1	NA	NA	NA	-29925	NM_011277	19821	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0.015000	0.547264	
mm_83029.1	chr9	37255311	37255511	-	1	NA	NA	NA	327	NM_020258	56857	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.095000	0.691542	
mm_75931.1	chr8	71525607	71525807	-	1	NA	NA	NA	11730	NM_198095	69550	Mm.260325	NM_198095	ENSMUSG00000046718	Bst2	2310015I10Rik|Bst-2|C87040|CD317|DAMP-1|GREG	bone marrow stromal cell antigen 2	protein-coding	0.090000	0.716418	
mm_75401.1	chr8	46208430	46208630	-	1	NA	NA	NA	2479	NM_007450	11739	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	0.045000	0.557214	
mm_171888.1	chr5	36779237	36779437	+	1	NA	NA	NA	17417	NM_026242	67568	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0.000000	0.482587	
mm_13794.1	chr2	118901292	118901492	+	1	NA	NA	NA	-223	NM_001045523	228536	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0.120000	0.751244	
mm_30359.1	chr3	151764154	151764354	-	1	NA	NA	NA	-1363	NM_031367	15061	Mm.219544	NM_031367	ENSMUSG00000039146	Ifi44l	H-28|H28|H28-1|NS1178	interferon-induced protein 44 like	protein-coding	0.000000	0.363184	
mm_32613.1	chr4	112288578	112288778	+	1	NA	NA	NA	56257	NM_001102474	195564	Mm.259652	NM_177578	ENSMUSG00000070868	Skint3	A430090E18Rik|Skint-3	selection and upkeep of intraepithelial T cells 3	protein-coding	0.015000	0.447761	
mm_135502.1	chr16	46496849	46497049	-	1	NA	NA	NA	18	NM_021496	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.185000	0.800995	
mm_77600.1	chr8	123892796	123892996	-	1	NA	NA	NA	1879	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.065000	0.601990	
mm_150103.1	chr19	29488600	29488800	+	1	NA	NA	NA	33287	NR_015567	77779	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.030000	0.447761	
mm_24362.1	chr3	90079456	90079656	+	1	NA	NA	NA	35	NM_001293749	59069	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0.090000	0.661692	-92(CCTTTACTGGAC,+,0.00)
mm_35072.1	chr4	6989015	6989215	-	1	NA	NA	NA	1608	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.005000	0.442786	
mm_19475.1	chr2	92540858	92541058	-	1	NA	NA	NA	-51248	NR_106080	102466819		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	0.010000	0.477612	
mm_149547.1	chr19	12595634	12595834	+	1	NA	NA	NA	832	NR_015503	74333	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	0.040000	0.547264	
mm_10493.1	chr2	14824079	14824279	+	1	NA	NA	NA	87	NM_001252533	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.035000	0.487562	
mm_64498.1	chr7	143475005	143475205	+	1	NA	NA	NA	-11	NM_001042760	18400	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0.035000	0.606965	
mm_57964.1	chr6	135254221	135254421	-	1	NA	NA	NA	15	NM_010352	14840	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	0.020000	0.611940	
mm_141113.1	chr17	26081989	26082189	-	1	NA	NA	NA	8075	NM_011933	26378	Mm.292869	NM_011933	ENSMUSG00000036775	Decr2	-	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	protein-coding	0.015000	0.472637	
mm_26389.1	chr3	142570814	142571014	+	1	NA	NA	NA	10418	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.010000	0.487562	
mm_63573.1	chr7	128117693	128117893	+	1	NA	NA	NA	-11775	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.000000	0.472637	
mm_59233.1	chr7	24777110	24777310	+	1	NA	NA	NA	6	NM_007675	26366	Mm.30300	NM_007675	ENSMUSG00000054169	Ceacam10	Bgp3|Cea10	carcinoembryonic antigen-related cell adhesion molecule 10	protein-coding	0.005000	0.572139	
mm_24119.1	chr3	88167524	88167724	+	1	NA	NA	NA	10161	NR_045997	76642	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.025000	0.636816	
mm_112488.1	chr13	6548041	6548241	+	1	NA	NA	NA	-16	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.085000	0.631841	
mm_53910.1	chr6	3968491	3968691	-	1	NA	NA	NA	-216	NM_009364	21789	Mm.25612	NM_009364	ENSMUSG00000029664	Tfpi2	AV000670|PP5/TFPI-2	tissue factor pathway inhibitor 2	protein-coding	0.015000	0.497512	
mm_167224.1	chr8	12647093	12647293	+	1	NA	NA	NA	24907	NM_198031	259279	Mm.142095	NM_198031	ENSMUSG00000000759	Tubgcp3	GCP3|Spc98p	tubulin, gamma complex associated protein 3	protein-coding	0.025000	0.522388	
mm_111510.1	chr12	99563858	99564058	-	1	NA	NA	NA	117	NR_136760	102639404	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.055000	0.537313	
mm_150564.1	chr19	39510813	39511013	+	1	NA	NA	NA	91	NM_010003	13098	Mm.42101	NM_010003	ENSMUSG00000025003	Cyp2c39	CYPIIC39	cytochrome P450, family 2, subfamily c, polypeptide 39	protein-coding	0.005000	0.452736	-97(TGCTATAAAAGG,-,0.00)
mm_74873.1	chr8	25029623	25029823	-	1	NA	NA	NA	9239	NM_001081187	330723	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0.005000	0.477612	
mm_78923.1	chr9	45042544	45042744	+	1	NA	NA	NA	300	NM_007962	14012	Mm.33240	NM_007962	ENSMUSG00000032092	Mpzl2	Eva|Eva1	myelin protein zero-like 2	protein-coding	0.060000	0.646766	
mm_135454.1	chr16	45724436	45724636	-	1	NA	NA	NA	-5	NM_019754	56370	Mm.24183	NM_019754	ENSMUSG00000022658	Tagln3	2700038H05Rik|2900005O10Rik|AI426007|Np25	transgelin 3	protein-coding	0.050000	0.567164	
mm_68713.1	chr7	119895555	119895755	-	1	NA	NA	NA	90	NM_001163703	233805	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0.105000	0.706468	
mm_52784.1	chr6	121256840	121257040	+	1	NA	NA	NA	11034	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.020000	0.412935	
mm_81159.1	chr9	107296129	107296329	+	1	NA	NA	NA	-430	NM_001317354	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.005000	0.472637	
mm_16358.1	chr2	174439617	174439817	+	1	NA	NA	NA	-678	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.020000	0.542289	
mm_99467.1	chr11	102435730	102435930	+	1	NA	NA	NA	5508	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.015000	0.587065	
mm_49588.1	chr6	30642924	30643124	+	1	NA	NA	NA	3806	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.020000	0.542289	
mm_9883.1	chr1	186558413	186558613	-	1	NA	NA	NA	168	NR_131124	320449	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.010000	0.472637	
mm_10783.1	chr2	24336839	24337039	+	1	NA	NA	NA	79	NM_031167	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.005000	0.507463	-34(TCCTTTATACAC,+,0.00)
mm_172222.1	chr6	66515882	66516082	+	1	NA	NA	NA	-19486	NM_019499	56150	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	0.015000	0.547264	
mm_59618.1	chr7	28147326	28147526	+	1	NA	NA	NA	17960	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.015000	0.542289	
mm_92552.1	chr10	79766698	79766898	-	1	NA	NA	NA	154	NM_144528	70294	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0.150000	0.771144	
mm_153277.1	chr19	37193966	37194166	-	1	NA	NA	NA	4042	NM_001290829	208922	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.005000	0.313433	
mm_160349.1	chr8	21084301	21084501	+	1	NA	NA	NA	-41	NM_007849	13236	Mm.376982	NM_007849	ENSMUSG00000094687	Defa25	Defcr-2|Defcr2|Defcr25	defensin, alpha, 25	protein-coding	0.000000	0.507463	
mm_514.1	chr1	37408750	37408950	+	1	NA	NA	NA	21253	NM_198006	76178	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	0.010000	0.537313	
mm_41449.1	chr5	90905314	90905514	+	1	NA	NA	NA	1515	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.005000	0.208955	17(TCTTAAAAGGTC,+,0.00)
mm_61903.1	chr7	90130193	90130393	+	1	NA	NA	NA	61	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.085000	0.721393	
mm_89874.1	chr10	108277628	108277828	+	1	NA	NA	NA	-54461	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.000000	0.313433	
mm_3052.1	chr1	134060981	134061181	+	1	NA	NA	NA	18074	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.045000	0.582090	
mm_87023.1	chr10	28089135	28089335	+	1	NA	NA	NA	14415	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0.015000	0.378109	
mm_156849.1	chrX	164400762	164400962	+	1	NA	NA	NA	-18925	NM_011081	18700	Mm.3781	NM_011081	ENSMUSG00000031381	Piga	AI194334|Pig-a	phosphatidylinositol glycan anchor biosynthesis, class A	protein-coding	0.010000	0.442786	
mm_128447.1	chr15	50769463	50769663	-	1	NA	NA	NA	119486	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.005000	0.343284	
mm_128689.1	chr15	61546345	61546545	-	1	NA	NA	NA	228006	NR_040350	432956	Mm.404918	NR_040350		D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	0.000000	0.502488	-37(GGGCATATAAAG,-,0.00)
mm_26136.1	chr3	137914841	137915041	+	1	NA	NA	NA	-3614	NM_019920	56692	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0.000000	0.338308	
mm_115896.1	chr13	22042865	22043065	-	1	NA	NA	NA	-16	NM_178186	319167	Mm.263165	NM_178186	ENSMUSG00000069301	Hist1h2ag	-	histone cluster 1, H2ag	protein-coding	0.070000	0.522388	
mm_48184.1	chr5	137472133	137472333	-	1	NA	NA	NA	4831	NM_011741	22635	Mm.7984	NM_011741	ENSMUSG00000079173	Zan	Zan-test	zonadhesin	protein-coding	0.010000	0.587065	
mm_155144.1	chrX	52788218	52788418	+	1	NA	NA	NA	-2882	NM_001034059	434778	Mm.23411	NM_001034059	ENSMUSG00000073207	Ccdc160	6330534C20Rik	coiled-coil domain containing 160	protein-coding	0.020000	0.417910	
mm_67838.1	chr7	98415524	98415724	-	1	NA	NA	NA	-24792	NM_001130693	14918	Mm.389928	NM_001034890	ENSMUSG00000074003	Gucy2d	-	guanylate cyclase 2d	protein-coding	0.005000	0.497512	
mm_38159.1	chr4	135214413	135214613	-	1	NA	NA	NA	58247	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.010000	0.373134	
mm_104854.1	chr11	99346437	99346637	-	1	NA	NA	NA	4581	NM_010666	16675	Mm.440476	NM_010666	ENSMUSG00000017588	Krt27	CK-27|Krt1-c29|mIRSa3.1|stpm	keratin 27	protein-coding	0.010000	0.358209	
mm_167511.1	chr9	13514630	13514830	+	1	NA	NA	NA	83369	NR_028271	18689	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.000000	0.432836	
mm_50658.1	chr6	51470514	51470714	+	1	NA	NA	NA	-2	NM_007624	12417	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	0.145000	0.796020	
mm_63793.1	chr7	132781973	132782173	+	1	NA	NA	NA	4862	NM_175268	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.025000	0.492537	-36(GGGTATATATAG,-,0.00)
mm_15078.1	chr2	153147388	153147588	+	1	NA	NA	NA	-13813	NM_133847	99237	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.000000	0.487562	
mm_135081.1	chr16	34263130	34263330	-	1	NA	NA	NA	250797	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.030000	0.522388	
mm_4180.1	chr1	171158673	171158873	+	1	NA	NA	NA	3255	NM_001315500	17528	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0.015000	0.497512	
mm_8444.1	chr1	152857315	152857515	-	1	NA	NA	NA	20753	NM_001160257	226517	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.005000	0.402985	31(GATCATTAAAGG,-,0.00)
mm_168202.1	chr10	6982819	6983019	-	1	NA	NA	NA	-2454	NM_001170801	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.005000	0.492537	
mm_61742.1	chr7	82264341	82264541	+	1	NA	NA	NA	4533	NM_001277954	20408	Mm.736	NM_017400	ENSMUSG00000030638	Sh3gl3	EEN-B2|SH3P13|Sh3d2c|Sh3d2c2	SH3-domain GRB2-like 3	protein-coding	0.005000	0.577114	-35(CACTATAAAAGG,-,0.00)
mm_118870.1	chr14	25855636	25855836	+	1	NA	NA	NA	13581	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.020000	0.507463	67(CCTTTTAAACAT,+,0.00)
mm_27956.1	chr3	79843339	79843539	-	1	NA	NA	NA	-777	NM_027495	70652	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.010000	0.422886	
mm_123163.1	chr14	57133469	57133669	-	1	NA	NA	NA	42	NM_001271663	14623	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	0.020000	0.582090	
mm_117429.1	chr13	74522333	74522533	-	1	NA	NA	NA	-28483	NM_146231	235956	Mm.296909	NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.025000	0.492537	
mm_60514.1	chr7	44479654	44479854	+	1	NA	NA	NA	-4763	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.010000	0.532338	
mm_59444.1	chr7	27133156	27133356	+	1	NA	NA	NA	13301	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.040000	0.587065	
mm_43107.1	chr5	124522544	124522744	+	1	NA	NA	NA	8747	NM_021430	75695	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0.030000	0.407960	-53(ATCTTTAAAAAG,-,0.00)
mm_52100.1	chr6	97868699	97868899	+	1	NA	NA	NA	-61018	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.015000	0.353234	
mm_15173.1	chr2	154130244	154130444	+	1	NA	NA	NA	8	NM_028528	73388	Mm.71904	NM_028528	ENSMUSG00000027482	Bpifa3	1700058C13Rik|Splunc3	BPI fold containing family A, member 3	protein-coding	0.000000	0.572139	
mm_101930.1	chr11	50202928	50203128	-	1	NA	NA	NA	7792	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.015000	0.517413	
mm_105043.1	chr11	100613251	100613451	-	1	NA	NA	NA	6817	NM_019795	56354	Mm.402409	NM_019795	ENSMUSG00000014195	Dnajc7	2010003F24Rik|2010004G07Rik|CCRP|Ttc2|mDj11|mTpr2	DnaJ heat shock protein family (Hsp40) member C7	protein-coding	0.015000	0.477612	
mm_87614.1	chr10	57786194	57786394	+	1	NA	NA	NA	1371	NM_021272	12140	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.015000	0.457711	
mm_123838.1	chr14	70635858	70636058	-	1	NA	NA	NA	90	NM_001252664	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.080000	0.746269	
mm_122516.1	chr14	47177781	47177981	-	1	NA	NA	NA	11521	NM_008102	14528	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	0.020000	0.452736	
mm_139820.1	chr17	67697165	67697365	+	1	NA	NA	NA	0	NM_008480	16772	Mm.303386	NM_008480	ENSMUSG00000032796	Lama1	AA408497|Lama	laminin, alpha 1	protein-coding	0.110000	0.746269	
mm_29535.1	chr3	116662516	116662716	-	1	NA	NA	NA	61	NM_008246	15247	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	0.145000	0.766169	
mm_117086.1	chr13	59731671	59731871	-	1	NA	NA	NA	-19	NM_177711	238663	Mm.444776	NM_177711	ENSMUSG00000043986	Spata31d1d	4932411G14Rik|Fam75d1d	spermatogenesis associated 31 subfamily D, member 1D	protein-coding	0.020000	0.577114	
mm_106342.1	chr11	118393161	118393361	-	1	NA	NA	NA	8670	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.020000	0.542289	
mm_131008.1	chr15	103562825	103563025	-	1	NA	NA	NA	2156	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.010000	0.442786	
mm_117392.1	chr13	73677894	73678094	-	1	NA	NA	NA	29	NM_001168646	22598	Mm.30370	NM_011730	ENSMUSG00000021612	Slc6a18	B0AT3|D630001K16Rik|Xt2|Xtrp2	solute carrier family 6 (neurotransmitter transporter), member 18	protein-coding	0.005000	0.527363	
mm_156119.1	chrX	114907481	114907681	+	1	NA	NA	NA	-1	NM_001081661	75097	Mm.50414	NM_001081661	ENSMUSG00000047079	Ube2dnl2	4930524E20Rik	ubiquitin-conjugating enzyme E2D N-terminal like 2	protein-coding	0.005000	0.492537	-20(CTCTTTAAAGGT,+,0.00)
mm_88804.1	chr10	80755028	80755228	+	1	NA	NA	NA	-78	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.170000	0.781095	
mm_138915.1	chr17	43604506	43604706	+	1	NA	NA	NA	-13097	NR_045444	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.000000	0.427861	
mm_76888.1	chr8	105637350	105637550	-	1	NA	NA	NA	912	NM_181322	13018	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0.145000	0.771144	
mm_88025.1	chr10	67219316	67219516	+	1	NA	NA	NA	33666	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.030000	0.442786	
mm_61.1	chr1	6591519	6591719	+	1	NA	NA	NA	104388	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.457711	-73(CTTTTTATGTCC,+,0.00)
mm_67224.1	chr7	74543572	74543772	-	1	NA	NA	NA	11108	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.010000	0.502488	
mm_139127.1	chr17	47504995	47505195	+	1	NA	NA	NA	44	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.075000	0.651741	
mm_120852.1	chr14	75222866	75223066	+	1	NA	NA	NA	-19321	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.025000	0.497512	
mm_103335.1	chr11	74590101	74590301	-	1	NA	NA	NA	-43	NM_001015046	380711	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.155000	0.761194	
mm_966.1	chr1	58115326	58115526	+	1	NA	NA	NA	2290	NM_023617	71724	Mm.20108	NM_023617	ENSMUSG00000064294	Aox3	1200011D03Rik|AI326299|Aoh1|Aoh2	aldehyde oxidase 3	protein-coding	0.005000	0.437811	
mm_52946.1	chr6	122952632	122952832	+	1	NA	NA	NA	88	NM_153197	73149	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.025000	0.467662	
mm_76234.1	chr8	83574639	83574839	-	1	NA	NA	NA	7981	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.040000	0.636816	
mm_60010.1	chr7	30729701	30729901	+	1	NA	NA	NA	-267	NM_027215	69804	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	0.080000	0.567164	
mm_132876.1	chr16	48630060	48630260	+	1	NA	NA	NA	141796	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.020000	0.507463	
mm_55554.1	chr6	71270620	71270820	-	1	NA	NA	NA	-951	NR_106192	102465900		NR_106192	ENSMUSG00000098623	Mir8112	Gm27739|mmu-mir-8112	microRNA 8112	ncRNA	0.015000	0.542289	
mm_39118.1	chr4	154944083	154944283	-	1	NA	NA	NA	-16106	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.010000	0.502488	
mm_68351.1	chr7	106509410	106509610	-	1	NA	NA	NA	-68437	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.005000	0.437811	
mm_133746.1	chr16	94085138	94085338	+	1	NA	NA	NA	-22	NM_011377	20465	Mm.4775	NM_011377	ENSMUSG00000062713	Sim2	bHLHe15	single-minded homolog 2 (Drosophila)	protein-coding	0.135000	0.726368	
mm_122514.1	chr14	47177221	47177421	-	1	NA	NA	NA	12081	NM_008102	14528	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	0.000000	0.378109	
mm_96890.1	chr11	70436575	70436775	+	1	NA	NA	NA	-1580	NR_106064	102465670		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.045000	0.601990	
mm_167444.1	chr8	121796155	121796355	-	1	NA	NA	NA	33314	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.000000	0.472637	
mm_48875.1	chr5	150665331	150665531	-	1	NA	NA	NA	181	NM_201369	381695	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|zag1	NEDD4 binding protein 2-like 2	protein-coding	0.070000	0.572139	
mm_80976.1	chr9	103181360	103181560	+	1	NA	NA	NA	20605	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.005000	0.358209	
mm_122240.1	chr14	33371172	33371372	-	1	NA	NA	NA	39752	NM_001310452	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.010000	0.412935	
mm_167304.1	chr8	57801197	57801397	-	1	NA	NA	NA	-148242	NM_144731	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0.010000	0.512438	
mm_129866.1	chr15	83367177	83367377	-	1	NA	NA	NA	20	NR_027980	69291	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0.090000	0.686567	
mm_90796.1	chr10	7212109	7212309	-	1	NA	NA	NA	28	NM_172546	215748	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.135000	0.706468	
mm_162568.1	chr1	172894809	172895009	-	1	NA	NA	NA	145	NM_011318	20219	Mm.330510	NM_011318	ENSMUSG00000026542	Apcs	Sap	serum amyloid P-component	protein-coding	0.000000	0.452736	
mm_117619.1	chr13	91807583	91807783	-	1	NA	NA	NA	13	NM_145453	69085	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	0.075000	0.611940	
mm_155490.1	chrX	73716693	73716893	+	1	NA	NA	NA	196	NM_007435	11666	Mm.365	NM_007435	ENSMUSG00000031378	Abcd1	ALDP|Ald|Aldgh	ATP-binding cassette, sub-family D (ALD), member 1	protein-coding	0.030000	0.601990	
mm_48512.1	chr5	142822268	142822468	-	1	NA	NA	NA	-4981	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.055000	0.542289	
mm_130669.1	chr15	100674510	100674710	-	1	NA	NA	NA	-5110	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.020000	0.527363	
mm_120615.1	chr14	70289458	70289658	+	1	NA	NA	NA	-61	NM_001304992	19057	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	0.150000	0.736318	
mm_142137.1	chr17	35963570	35963770	-	1	NA	NA	NA	-2856	NR_030608	100124459		NR_030608	ENSMUSG00000077931	Mir877	Mirn877|mir-877|mmu-mir-877	microRNA 877	ncRNA	0.015000	0.517413	
mm_157604.1	chrX	53643643	53643843	-	1	NA	NA	NA	20	NM_024170	66158	Mm.391252	NM_024170	ENSMUSG00000067925	Cxx1a	1110012O05Rik|Mar8.2A/B|Mart8b	CAAX box 1A	protein-coding	0.055000	0.577114	
mm_25556.1	chr3	116008310	116008510	+	1	NA	NA	NA	113	NM_001163514	58193	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	0.035000	0.542289	
mm_40159.1	chr5	35587944	35588144	+	1	NA	NA	NA	719	NR_045807	74364	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	0.035000	0.601990	
mm_138464.1	chr17	35170892	35171092	+	1	NA	NA	NA	5009	NM_019467	11629	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.020000	0.512438	
mm_76151.1	chr8	82353413	82353613	-	1	NA	NA	NA	49073	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.010000	0.507463	
mm_72368.1	chr8	80948857	80949057	+	1	NA	NA	NA	65949	NM_027554	74841	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	0.005000	0.472637	-35(CATTTTAAAAGC,-,0.00)
mm_160713.1	chr10	60820453	60820653	-	1	NA	NA	NA	11028	NM_029770	107449	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0.010000	0.577114	
mm_154204.1	chr19	59041862	59042062	-	1	NA	NA	NA	34107	NM_175172	71653	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Kiaa1598|Shootin1|mKIAA1598	shootin 1	protein-coding	0.015000	0.432836	
mm_58727.1	chr7	13027804	13028004	+	1	NA	NA	NA	3752	NM_011588	21849	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	0.025000	0.497512	
mm_22575.1	chr3	10351432	10351632	+	1	NA	NA	NA	-215	NM_001331014	66361	Mm.371617	NM_025512	ENSMUSG00000039795	Zfand1	2310008M20Rik|AW048890	zinc finger, AN1-type domain 1	protein-coding	0.060000	0.601990	
mm_18020.1	chr2	38613580	38613780	-	1	NA	NA	NA	30226	NM_011187	19177	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0.010000	0.467662	
mm_83031.1	chr9	37255353	37255553	-	1	NA	NA	NA	285	NM_020258	56857	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.100000	0.686567	
mm_6901.1	chr1	84786031	84786231	-	1	NA	NA	NA	53173	NM_133975	14897	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.015000	0.417910	-75(CCATTTATAGGT,+,0.00)
mm_170147.1	chr17	45450588	45450788	+	1	NA	NA	NA	16857	NR_130961	105246278	Mm.206588	NR_130960	ENSMUSG00000097119	B230354K17Rik	-	RIKEN cDNA B230354K17 gene	ncRNA	0.015000	0.437811	
mm_2754.1	chr1	129273353	129273553	+	1	NA	NA	NA	149	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	0.065000	0.621891	
mm_140901.1	chr17	24141467	24141667	-	1	NA	NA	NA	27	NM_011062	18607	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	0.155000	0.776119	
mm_126890.1	chr15	89497889	89498089	+	1	NA	NA	NA	-1868	NM_021423	58234	Mm.146855	NM_021423	ENSMUSG00000022623	Shank3	AI841104|SHANK3c-3|SHANK3c-4|Shank3b	SH3/ankyrin domain gene 3	protein-coding	0.010000	0.601990	
mm_63942.1	chr7	139834110	139834310	+	1	NA	NA	NA	36	NM_177469	52389	Mm.39863	NM_177469	ENSMUSG00000025475	Adgra1	2900059M17Rik|D7Ertd680e|Gpr123	adhesion G protein-coupled receptor A1	protein-coding	0.080000	0.681592	
mm_139566.1	chr17	56990304	56990504	+	1	NA	NA	NA	140	NM_017393	53895	Mm.287892	NM_017393	ENSMUSG00000002660	Clpp	AU019820|D17Wsu160e	caseinolytic mitochondrial matrix peptidase proteolytic subunit	protein-coding	0.080000	0.656716	
mm_101865.1	chr11	48872254	48872454	-	1	NA	NA	NA	-1008	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding	0.020000	0.527363	
mm_130364.1	chr15	97791239	97791439	-	1	NA	NA	NA	6974	NM_026353	67739	Mm.28955	NM_026353	ENSMUSG00000081534	Slc48a1	4930570C03Rik	solute carrier family 48 (heme transporter), member 1	protein-coding	0.030000	0.562189	
mm_149302.1	chr19	10712862	10713062	+	1	NA	NA	NA	24147	NM_181403	107305	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.015000	0.626866	
mm_98190.1	chr11	87793926	87794126	+	1	NA	NA	NA	242	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.010000	0.547264	
mm_73659.1	chr8	111033774	111033974	+	1	NA	NA	NA	32	NM_146217	234734	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	0.070000	0.577114	
mm_5264.1	chr1	17082360	17082560	-	1	NA	NA	NA	15429	NM_020604	57339	Mm.143761	NM_020604	ENSMUSG00000042686	Jph1	ENSMUSG00000054314|JP-1|Jp1	junctophilin 1	protein-coding	0.015000	0.437811	
mm_151176.1	chr19	53310765	53310965	+	1	NA	NA	NA	359	NM_001008542	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.090000	0.666667	
mm_579.1	chr1	39352345	39352545	+	1	NA	NA	NA	-15406	NM_053257	114641	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.005000	0.298507	
mm_44481.1	chr5	23435159	23435359	-	1	NA	NA	NA	830	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.035000	0.522388	
mm_68585.1	chr7	116033515	116033715	-	1	NA	NA	NA	-2568	NM_001025560	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.060000	0.547264	
mm_94028.1	chr10	127751622	127751822	-	1	NA	NA	NA	76	NM_007412	11536	Mm.2857	NM_007412	ENSMUSG00000058396	Gpr182	AM-R|Admr|G10-D|Gpcr17|Gpcr22|MB10|NOW	G protein-coupled receptor 182	protein-coding	0.025000	0.616915	
mm_74572.1	chr8	11199656	11199856	-	1	NA	NA	NA	-113049	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.025000	0.497512	
mm_22941.1	chr3	31954668	31954868	+	1	NA	NA	NA	52065	NM_028231	72413	Mm.64790	NM_028231	ENSMUSG00000037610	Kcnmb2	2700049B16Rik|3110031N04Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 2	protein-coding	0.010000	0.422886	
mm_39972.1	chr5	32232605	32232805	+	1	NA	NA	NA	-3	NM_030072	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0.025000	0.552239	
mm_135768.1	chr16	56795761	56795961	-	1	NA	NA	NA	-3	NM_172825	239853	Mm.258979	NM_172825	ENSMUSG00000022755	Adgrg7	9130020O16Rik|Gpr128	adhesion G protein-coupled receptor G7	protein-coding	0.015000	0.462687	
mm_59815.1	chr7	29172243	29172443	+	1	NA	NA	NA	1953	NM_182696	243897	Mm.389886	NM_182694	ENSMUSG00000031493	Ggn	AI593290	gametogenetin	protein-coding	0.055000	0.626866	
mm_48128.1	chr5	137149754	137149954	-	1	NA	NA	NA	-33647	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.010000	0.497512	
mm_167290.1	chr8	45409831	45410031	-	1	NA	NA	NA	608	NM_126166	142980	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0.005000	0.412935	
mm_55891.1	chr6	83536155	83536355	-	1	NA	NA	NA	-4	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.020000	0.457711	-80(CACCTTATATGG,-,0.00),-78(CCTTATATGGTA,+,0.00),-42(GCCTTTTTAGGG,-,0.00),-40(CTTTTTAGGGAC,+,0.00)
mm_109470.1	chr12	111420411	111420611	+	1	NA	NA	NA	3066	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.010000	0.582090	
mm_94740.1	chr11	21092856	21093056	+	1	NA	NA	NA	1632	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.005000	0.303483	
mm_142739.1	chr17	48408891	48409091	-	1	NA	NA	NA	829	NM_001110832	18044	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	0.070000	0.597015	
mm_140167.1	chr17	80307204	80307404	+	1	NA	NA	NA	-103	NM_001145452	381112	Mm.360004	NM_001145452	ENSMUSG00000054901	Arhgef33	Gm941	Rho guanine nucleotide exchange factor (GEF) 33	protein-coding	0.010000	0.487562	68(TCATTTAAAAGC,-,0.00)
mm_79919.1	chr9	65579126	65579326	+	1	NA	NA	NA	861	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.025000	0.497512	
mm_109823.1	chr12	3862145	3862345	-	1	NA	NA	NA	-1	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.005000	0.567164	
mm_94741.1	chr11	21092932	21093132	+	1	NA	NA	NA	1708	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.000000	0.278607	40(TCTTTTAAACAC,+,0.00)
mm_167716.1	chr9	98424994	98425194	+	1	NA	NA	NA	2133	NM_011254	19659	Mm.279741	NM_011254	ENSMUSG00000046402	Rbp1	CRBPI|Crbp|Rbp-1	retinol binding protein 1, cellular	protein-coding	0.095000	0.641791	
mm_62490.1	chr7	101921215	101921415	+	1	NA	NA	NA	-541	NM_001162974	69358	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0.005000	0.467662	
mm_92247.1	chr10	70367757	70367957	-	1	NA	NA	NA	-72811	NM_001143777	71721	Mm.477813	NM_024244	ENSMUSG00000043259	Fam13c	1200015N20Rik|C030038O19Rik|mKIAA1796	family with sequence similarity 13, member C	protein-coding	0.055000	0.537313	
mm_141576.1	chr17	32350452	32350652	-	1	NA	NA	NA	25	NM_017476	54194	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	0.065000	0.611940	
mm_155460.1	chrX	73503062	73503262	+	1	NA	NA	NA	76	NM_177236	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.130000	0.756219	
mm_98280.1	chr11	89029312	89029512	+	1	NA	NA	NA	30009	NM_009546	217069	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.005000	0.532338	
mm_61062.1	chr7	49975184	49975384	+	1	NA	NA	NA	-66	NM_001037906	338352	Mm.383528	NM_001037906	ENSMUSG00000055409	Nell1	B230343H07Rik|l7R6	NEL-like 1	protein-coding	0.100000	0.726368	
mm_61201.1	chr7	64001780	64001980	+	1	NA	NA	NA	-62965	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.020000	0.552239	
mm_159622.1	chr4	135385553	135385753	-	1	NA	NA	NA	19	NM_001168498	230822	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	0.025000	0.562189	
mm_67592.1	chr7	83660984	83661184	-	1	NA	NA	NA	29067	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.015000	0.641791	
mm_129815.1	chr15	82998971	82999171	-	1	NA	NA	NA	24067	NM_028728	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.025000	0.572139	
mm_20952.1	chr2	151729847	151730047	-	1	NA	NA	NA	11363	NM_212446	228769	Mm.146984	NM_144889	ENSMUSG00000032869	Psmf1	AW048666|BC012260|PI31	proteasome (prosome, macropain) inhibitor subunit 1	protein-coding	0.005000	0.522388	
mm_90576.1	chr10	128247199	128247399	+	1	NA	NA	NA	-6832	NM_133996	28194	Mm.439846	NM_133996	ENSMUSG00000051716	Apon	AI195275|D10Ucla2	apolipoprotein N	protein-coding	0.015000	0.557214	
mm_27812.1	chr3	78594343	78594543	-	1	NA	NA	NA	550444	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.025000	0.467662	
mm_135113.1	chr16	35771272	35771472	-	1	NA	NA	NA	986	NM_175111	66667	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	0.015000	0.567164	
mm_129445.1	chr15	78544576	78544776	-	1	NA	NA	NA	-331	NM_009218	20607	Mm.211411	NM_009218	ENSMUSG00000044933	Sstr3	Smstr-3|Smstr3|sst3	somatostatin receptor 3	protein-coding	0.010000	0.562189	
mm_140772.1	chr17	17838105	17838305	-	1	NA	NA	NA	7230	NM_001162909	75202	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0.090000	0.611940	
mm_114874.1	chr13	94130676	94130876	+	1	NA	NA	NA	72980	NM_172589	218454	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.015000	0.452736	
mm_152006.1	chr19	5919750	5919950	-	1	NA	NA	NA	4966	NM_026772	104252	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.005000	0.452736	
mm_169793.1	chr16	15452128	15452328	+	1	NA	NA	NA	142290	NM_001159351	70620	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	0.005000	0.378109	
mm_6522.1	chr1	74505716	74505916	-	1	NA	NA	NA	5	NM_001310662	319651	Mm.66568	NM_176972	ENSMUSG00000033364	Usp37	4932415L06Rik|C330008N13Rik	ubiquitin specific peptidase 37	protein-coding	0.105000	0.631841	
mm_74962.1	chr8	26157941	26158141	-	1	NA	NA	NA	-128	NM_199042	73754	Mm.383241	NM_199042	ENSMUSG00000037214	Thap1	4833431A01Rik|AW490810	THAP domain containing, apoptosis associated protein 1	protein-coding	0.075000	0.601990	
mm_130922.1	chr15	102721988	102722188	-	1	NA	NA	NA	90	NM_026192	67488	Mm.71682	NM_026192	ENSMUSG00000023055	Calcoco1	1810009B06Rik|Cocoa|Gcap11|mKIAA1536	calcium binding and coiled coil domain 1	protein-coding	0.045000	0.547264	
mm_141084.1	chr17	25941786	25941986	-	1	NA	NA	NA	103	NM_001291025	14755	Mm.362054	NM_011822	ENSMUSG00000025728	Pigq	Gpi1|Gpi1h|Gpi1p|Gpih	phosphatidylinositol glycan anchor biosynthesis, class Q	protein-coding	0.140000	0.741294	
mm_158044.1	chrX	98890529	98890729	-	1	NA	NA	NA	396	NM_052976	94190	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	0.060000	0.656716	-60(GGCTTTAAGAAG,-,0.00)
mm_171289.1	chr3	90079757	90079957	+	1	NA	NA	NA	336	NM_001293749	59069	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0.075000	0.646766	
mm_168934.1	chr12	6770844	6771044	+	1	NA	NA	NA	609386	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA	0.030000	0.417910	
mm_80074.1	chr9	69767528	69767728	+	1	NA	NA	NA	6482	NR_040765	319970	Mm.186434	NR_040765	ENSMUSG00000097623	B230323A14Rik	-	RIKEN cDNA B230323A14 gene	ncRNA	0.025000	0.646766	
mm_16041.1	chr2	167693358	167693558	+	1	NA	NA	NA	2281	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.005000	0.422886	
mm_124751.1	chr15	6633578	6633778	+	1	NA	NA	NA	53831	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.000000	0.402985	49(CTTTTTTAAAGG,-,0.00),50(TTTTTTAAAGGT,+,0.00)
mm_118427.1	chr14	7951107	7951307	+	1	NA	NA	NA	42975	NM_007870	13421	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.010000	0.502488	
mm_114323.1	chr13	60602107	60602307	+	1	NA	NA	NA	-4	NM_134062	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.105000	0.776119	
mm_120761.1	chr14	73368252	73368452	+	1	NA	NA	NA	16919	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.040000	0.482587	
mm_123103.1	chr14	55882592	55882792	-	1	NA	NA	NA	1564	NM_019820	56410	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0.020000	0.601990	
mm_90912.1	chr10	12383766	12383966	-	1	NA	NA	NA	477869	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.000000	0.333333	
mm_20783.1	chr2	143989001	143989201	-	1	NA	NA	NA	22162	NM_133626	81910	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.000000	0.587065	
mm_100712.1	chr11	3775048	3775248	-	1	NA	NA	NA	-52921	NM_001302630	74309	Mm.61022	NM_152818	ENSMUSG00000020435	Osbp2	1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1	oxysterol binding protein 2	protein-coding	0.025000	0.527363	
mm_141987.1	chr17	35165057	35165257	-	1	NA	NA	NA	-280	NM_020027	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.110000	0.621891	
mm_24020.1	chr3	87526421	87526621	+	1	NA	NA	NA	943	NM_012051	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.020000	0.422886	
mm_145640.1	chr18	61117457	61117657	+	1	NA	NA	NA	89	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.015000	0.502488	
mm_151234.1	chr19	53793216	53793416	+	1	NA	NA	NA	-98915	NM_011050	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.045000	0.587065	
mm_130200.1	chr15	94589748	94589948	-	1	NA	NA	NA	-24	NM_008971	19230	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0.110000	0.736318	
mm_19472.1	chr2	92459690	92459890	-	1	NA	NA	NA	4	NM_211358	228368	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.110000	0.681592	-35(GGCCCTTTAAGG,-,0.00),-34(GCCCTTTAAGGC,-,0.00),-33(CCCTTTAAGGCG,+,0.00),-32(CCTTTAAGGCGG,+,0.00)
mm_92769.1	chr10	81148326	81148526	-	1	NA	NA	NA	12155	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.065000	0.567164	
mm_22902.1	chr3	30855874	30856074	+	1	NA	NA	NA	24	NM_001286994	71862	Mm.272019	NM_027965	ENSMUSG00000037661	Gpr160	1700025D19Rik|GPCR150	G protein-coupled receptor 160	protein-coding	0.115000	0.721393	
mm_21304.1	chr2	157079001	157079201	-	1	NA	NA	NA	164	NM_001164663	320706	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.180000	0.815920	
mm_106783.1	chr12	4712266	4712466	+	1	NA	NA	NA	26017	NM_029107	74855	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	0.010000	0.537313	
mm_112160.1	chr12	113329609	113329809	-	1	NA	NA	NA	143806	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.010000	0.497512	
mm_159255.1	chr2	152754890	152755090	+	1	NA	NA	NA	817	NM_053091	84682	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit IV isoform 2	protein-coding	0.010000	0.402985	
mm_94068.1	chr10	128401103	128401303	-	1	NA	NA	NA	21	NM_001136237	72002	Mm.22983	NM_028051	ENSMUSG00000039878	Slc39a5	1810013D05Rik|2010205A06Rik|Zip5	solute carrier family 39 (metal ion transporter), member 5	protein-coding	0.010000	0.601990	-93(GCCCCTTTAAGG,-,0.00),-91(CCCTTTAAGGTA,+,0.00)
mm_3124.1	chr1	134709174	134709374	+	1	NA	NA	NA	62593	NM_009307	20980	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194	synaptotagmin II	protein-coding	0.120000	0.701493	
mm_68138.1	chr7	102239621	102239821	-	1	NA	NA	NA	10397	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.050000	0.606965	
mm_39344.1	chr5	8893776	8893976	+	1	NA	NA	NA	155	NM_008830	18670	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.150000	0.761194	
mm_71539.1	chr8	47220658	47220858	+	1	NA	NA	NA	68644	NM_001286376	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.010000	0.412935	
mm_70539.1	chr8	13039259	13039459	+	1	NA	NA	NA	2051	NM_001242368	14058	Mm.262589	NM_007972	ENSMUSG00000031444	F10	Cf10|fX	coagulation factor X	protein-coding	0.015000	0.532338	
mm_39678.1	chr5	25555840	25556040	+	1	NA	NA	NA	25922	NR_027388	73571	Mm.105263	NR_027388	ENSMUSG00000101856	1700096K18Rik	-	RIKEN cDNA 1700096K18 gene	ncRNA	0.015000	0.517413	
mm_147008.1	chr18	34506655	34506855	-	1	NA	NA	NA	68	NM_146084	225358	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	0.145000	0.776119	
mm_52257.1	chr6	107554338	107554538	+	1	NA	NA	NA	24712	NM_008516	16979	Mm.428543	NM_008516	ENSMUSG00000034648	Lrrn1	2810047E21Rik|NLRR-1	leucine rich repeat protein 1, neuronal	protein-coding	0.000000	0.447761	
mm_146881.1	chr18	25679485	25679685	-	1	NA	NA	NA	74398	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.090000	0.716418	
mm_22422.1	chr2	181581902	181582102	-	1	NA	NA	NA	-29	NM_026765	68556	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	0.090000	0.676617	
mm_122047.1	chr14	30056255	30056455	-	1	NA	NA	NA	33722	NM_175343	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.025000	0.567164	
mm_115771.1	chr13	19307776	19307976	-	1	NA	NA	NA	87937	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.020000	0.412935	-2(GACCATAAAAGC,-,0.00)
mm_117100.1	chr13	59823008	59823208	-	1	NA	NA	NA	39	NM_153538	214290	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.130000	0.731343	
mm_10360.1	chr2	11705233	11705433	+	1	NA	NA	NA	40	NM_001271497	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.040000	0.601990	
mm_3585.1	chr1	151344401	151344601	+	1	NA	NA	NA	3	NM_001039511	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.160000	0.736318	
mm_89327.1	chr10	87931978	87932178	+	1	NA	NA	NA	-34593	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.462687	
mm_133932.1	chr16	3872140	3872340	-	1	NA	NA	NA	134	NM_001033159	71063	Mm.379190	NM_001033159	ENSMUSG00000039789	Zfp597	4933407K12Rik|AI462383|AI666357	zinc finger protein 597	protein-coding	0.065000	0.601990	
mm_120460.1	chr14	65970542	65970742	+	1	NA	NA	NA	2159	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.025000	0.522388	-60(GCCTATTAATGA,-,0.00),67(GCCCAGATAAGC,-,0.00)
mm_19448.1	chr2	91986131	91986331	-	1	NA	NA	NA	-22668	NM_138306	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.020000	0.527363	
mm_110888.1	chr12	75549552	75549752	-	1	NA	NA	NA	46548	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.000000	0.442786	14(CAGTTTAAAGGC,-,0.00)
mm_91642.1	chr10	42276616	42276816	-	1	NA	NA	NA	26	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.085000	0.721393	
mm_23824.1	chr3	81036588	81036788	+	1	NA	NA	NA	272	NM_019971	54635	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C	platelet-derived growth factor, C polypeptide	protein-coding	0.100000	0.716418	
mm_71460.1	chr8	46528497	46528697	+	1	NA	NA	NA	-23472	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.035000	0.507463	
mm_160553.1	chr9	49016582	49016782	+	1	NA	NA	NA	31297	NM_175482	235323	Mm.21630	NM_175482	ENSMUSG00000032267	Usp28	9830148O20Rik|AU022237|mKIAA1515	ubiquitin specific peptidase 28	protein-coding	0.005000	0.383085	
mm_33147.1	chr4	125158203	125158403	+	1	NA	NA	NA	-30422	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.005000	0.517413	
mm_59074.1	chr7	19517526	19517726	+	1	NA	NA	NA	-1105	NM_027116	69547	Mm.77325	NM_027116	ENSMUSG00000060621	Nkpd1	2310015G09Rik	NTPase, KAP family P-loop domain containing 1	protein-coding	0.020000	0.537313	
mm_41095.1	chr5	87694612	87694812	+	1	NA	NA	NA	4713	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.522388	
mm_77609.1	chr8	123893348	123893548	-	1	NA	NA	NA	1327	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.015000	0.522388	
mm_18059.1	chr2	39226351	39226551	-	1	NA	NA	NA	-113	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding	0.070000	0.537313	
mm_43031.1	chr5	123930639	123930839	+	1	NA	NA	NA	50	NM_001134767	208908	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|Gm150	coiled-coil domain containing 62	protein-coding	0.125000	0.716418	
mm_83279.1	chr9	43104443	43104643	-	1	NA	NA	NA	1175	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0.015000	0.393035	25(GCATTTAAAGAT,+,0.00)
mm_1848.1	chr1	83060830	83061030	+	1	NA	NA	NA	0	NM_027778	71386	Mm.389133	NM_027778	ENSMUSG00000101315	Krtap28-13	5530401N06Rik	keratin associated protein 28-13	protein-coding	0.005000	0.497512	-34(CAGTATAAAAGG,-,0.00)
mm_153018.1	chr19	30681763	30681963	-	1	NA	NA	NA	-132367	NM_010051	13380	Mm.214717	NM_010051	ENSMUSG00000024868	Dkk1	mdkk-1	dickkopf WNT signaling pathway inhibitor 1	protein-coding	0.005000	0.303483	
mm_80839.1	chr9	97275641	97275841	+	1	NA	NA	NA	94217	NM_030219	78911	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	0.035000	0.487562	
mm_103698.1	chr11	79516295	79516495	-	1	NA	NA	NA	7367	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.005000	0.442786	
mm_162874.1	chr10	96617452	96617652	+	1	NA	NA	NA	551	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.150000	0.766169	
mm_22969.1	chr3	32708169	32708369	+	1	NA	NA	NA	-277	NM_019673	56456	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0.015000	0.527363	
mm_98638.1	chr11	96194183	96194383	+	1	NA	NA	NA	-78	NM_008267	15408	Mm.57221	NM_008267	ENSMUSG00000049604	Hoxb13	-	homeobox B13	protein-coding	0.065000	0.621891	
mm_87344.1	chr10	43518493	43518693	+	1	NA	NA	NA	22401	NM_026411	67851	Mm.209953	NM_026411	ENSMUSG00000019797	1700021F05Rik	-	RIKEN cDNA 1700021F05 gene	protein-coding	0.040000	0.562189	
mm_105753.1	chr11	109472972	109473172	-	1	NA	NA	NA	157	NM_134038	104681	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.055000	0.641791	54(CGGTTTATAAGA,-,0.00)
mm_123474.1	chr14	65974900	65975100	-	1	NA	NA	NA	6517	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.020000	0.557214	
mm_31147.1	chr4	43384244	43384444	+	1	NA	NA	NA	2362	NM_001037709	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.020000	0.502488	
mm_126498.1	chr15	81744994	81745194	+	1	NA	NA	NA	246	NM_001081016	20286	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	0.105000	0.726368	
mm_139672.1	chr17	57412232	57412432	+	1	NA	NA	NA	53646	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.353234	
mm_101828.1	chr11	47379188	47379388	-	1	NA	NA	NA	14	NM_011891	24052	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.045000	0.641791	
mm_18019.1	chr2	38536213	38536413	-	1	NA	NA	NA	24437	NM_001159631	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.010000	0.482587	
mm_141718.1	chr17	34031556	34031756	-	1	NA	NA	NA	34	NM_001077709	14977	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	0.125000	0.701493	
mm_48674.1	chr5	146160446	146160646	-	1	NA	NA	NA	24758	NM_001008547	69282	Mm.373573	NM_001008547	ENSMUSG00000095040	1700001J03Rik	-	RIKEN cDNA 1700001J03 gene	protein-coding	0.010000	0.492537	
mm_135945.1	chr16	74411425	74411625	-	1	NA	NA	NA	-613	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.040000	0.562189	
mm_140122.1	chr17	79134066	79134266	+	1	NA	NA	NA	82260	NM_001316729	70536	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	0.025000	0.452736	
mm_11006.1	chr2	26515934	26516134	+	1	NA	NA	NA	12107	NR_132655	102639736		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0.005000	0.497512	
mm_74717.1	chr8	17372038	17372238	-	1	NA	NA	NA	163247	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.000000	0.363184	-90(GCATATATACAC,+,0.00),-13(CTGTATAAAGGG,-,0.00),40(TCACATAAAAGG,-,0.00)
mm_91368.1	chr10	29361921	29362121	-	1	NA	NA	NA	421	NM_026518	68031	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	0.170000	0.810945	
mm_146758.1	chr18	16808493	16808693	-	1	NA	NA	NA	653	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.090000	0.686567	
mm_67568.1	chr7	81934183	81934383	-	1	NA	NA	NA	176	NM_013886	29877	Mm.392934	NM_013886	ENSMUSG00000025104	Hdgfrp3	2700022B06Rik|HRP-3	hepatoma-derived growth factor, related protein 3	protein-coding	0.170000	0.805970	
mm_20928.1	chr2	150855738	150855938	-	1	NA	NA	NA	48893	NM_024465	76192	Mm.112632	NM_024465	ENSMUSG00000032046	Abhd12	1500011G07Rik|6330583M11Rik|AI431047|AW547313	abhydrolase domain containing 12	protein-coding	0.010000	0.373134	
mm_29685.1	chr3	123032911	123033111	-	1	NA	NA	NA	1976	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.005000	0.313433	
mm_49053.1	chr6	5048169	5048369	+	1	NA	NA	NA	144949	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.010000	0.457711	
mm_145597.1	chr18	60987836	60988036	+	1	NA	NA	NA	24382	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.010000	0.457711	
mm_169520.1	chr14	8800195	8800395	-	1	NA	NA	NA	133905	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	0.055000	0.552239	
mm_54513.1	chr6	35511614	35511814	-	1	NA	NA	NA	28174	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.015000	0.437811	
mm_106496.1	chr11	120348402	120348602	-	1	NA	NA	NA	-7	NM_009609	11465	Mm.196173	NM_009609	ENSMUSG00000062825	Actg1	AL023024|Actg|Actl|E51	actin, gamma, cytoplasmic 1	protein-coding	0.160000	0.711443	-85(CGCCATATATGG,-,0.00),-83(CCATATATGGAC,+,0.00),-23(GCTTAAATAGCG,+,0.00)
mm_109698.1	chr12	113155273	113155473	+	1	NA	NA	NA	-1048	NM_134041	104732	Mm.87616	NM_134041	ENSMUSG00000037466	4930427A07Rik	AA536649|mFLJ00116	RIKEN cDNA 4930427A07 gene	protein-coding	0.040000	0.552239	
mm_65569.1	chr7	27180992	27181192	-	1	NA	NA	NA	57	NM_019394	12587	Mm.262447	NM_019394	ENSMUSG00000089661	Mia	CD-RAP|Cdrap|Mia1	melanoma inhibitory activity	protein-coding	0.025000	0.532338	
mm_31293.1	chr4	45972251	45972451	+	1	NA	NA	NA	54	NM_146142	100121	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.135000	0.776119	
mm_67665.1	chr7	86775844	86776044	-	1	NA	NA	NA	-80	NM_001159706	53320	Mm.269137	NM_016770	ENSMUSG00000001773	Folh1	GCP2|mopsm	folate hydrolase 1	protein-coding	0.010000	0.437811	
mm_76649.1	chr8	93131183	93131383	-	1	NA	NA	NA	0	NM_007954	13884	Mm.88078	NM_007954	ENSMUSG00000057400	Ces1c	Ces-N|Ee-1|Ee1|Es-4|Es-N|Es1|Es4|EsN|PESN	carboxylesterase 1C	protein-coding	0.000000	0.472637	-33(TTCTATTTAAGC,-,0.00),-6(GTCTCTAAGAGC,-,0.00)
mm_131748.1	chr16	22265476	22265676	+	1	NA	NA	NA	429	NM_001330554	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding	0.140000	0.716418	
mm_44675.1	chr5	29736320	29736520	-	1	NA	NA	NA	-484	NR_028426	332993	Mm.473746	NR_028426		Gm5129	EG332993|ENSMUSG00000053121	predicted gene 5129	ncRNA	0.070000	0.631841	
mm_72192.1	chr8	72492888	72493088	+	1	NA	NA	NA	-374	NM_177766	270066	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	0.080000	0.601990	
mm_44022.1	chr5	147418534	147418734	+	1	NA	NA	NA	14	NR_033625	100039805	Mm.394705	NR_033625	ENSMUSG00000106820	D5Ertd605e	Gm2433	DNA segment, Chr 5, ERATO Doi 605, expressed	ncRNA	0.020000	0.522388	57(CCTCTTAAACTG,+,0.00)
mm_80702.1	chr9	92249622	92249822	+	1	NA	NA	NA	-472	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.025000	0.417910	
mm_117300.1	chr13	67108478	67108678	-	1	NA	NA	NA	5450	NM_001256052	432770	Mm.124021	NM_001256052	ENSMUSG00000074824	Rslcan18	mszf51	regulator of sex-limitation candidate 18	protein-coding	0.035000	0.517413	
mm_91283.1	chr10	24712040	24712240	-	1	NA	NA	NA	19	NM_001308327	18605	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	0.105000	0.706468	
mm_152987.1	chr19	29646079	29646279	-	1	NA	NA	NA	2241	NM_001081213	226090	Mm.267131	NM_146098	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	0.025000	0.487562	
mm_24257.1	chr3	89186652	89186852	+	1	NA	NA	NA	3527	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.030000	0.547264	
mm_41132.1	chr5	87788640	87788840	+	1	NA	NA	NA	14290	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.025000	0.358209	
mm_24655.1	chr3	94443191	94443391	+	1	NA	NA	NA	-45	NM_030116	78523	Mm.218515	NM_030116	ENSMUSG00000028140	Mrpl9	8030480E20Rik|AA409733|C330013D18Rik|L9mt	mitochondrial ribosomal protein L9	protein-coding	0.095000	0.676617	
mm_77331.1	chr8	119501664	119501864	-	1	NA	NA	NA	-66	NM_001009950	234788	Mm.302096	NM_001009950	ENSMUSG00000034224	Slc38a8	Gm587	solute carrier family 38, member 8	protein-coding	0.010000	0.537313	
mm_52165.1	chr6	98275819	98276019	+	1	NA	NA	NA	66835	NM_001128092	330390	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0.040000	0.512438	
mm_73689.1	chr8	111560842	111561042	+	1	NA	NA	NA	22599	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.005000	0.343284	-81(GCTTTTAGGAGG,+,0.00)
mm_93522.1	chr10	115289835	115290035	-	1	NA	NA	NA	25656	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.015000	0.378109	
mm_4529.1	chr1	175632077	175632277	+	1	NA	NA	NA	-16	NM_133809	98256	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	0.020000	0.467662	
mm_11784.1	chr2	40555588	40555788	+	1	NA	NA	NA	-1329350	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding	0.035000	0.383085	
mm_20193.1	chr2	122702656	122702856	-	1	NA	NA	NA	-93	NM_001290993	22785	Mm.27801	NM_011774	ENSMUSG00000005802	Slc30a4	Znt4|lm|znT-4	solute carrier family 30 (zinc transporter), member 4	protein-coding	0.170000	0.840796	
mm_100669.1	chr11	3335724	3335924	-	1	NA	NA	NA	5093	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.025000	0.537313	
mm_12580.1	chr2	73274704	73274904	+	1	NA	NA	NA	2878	NM_001005343	381373	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0.075000	0.587065	
mm_44636.1	chr5	27919176	27919376	-	1	NA	NA	NA	77329	NM_008314	15563	Mm.4835	NM_008314	ENSMUSG00000039106	Htr5a	Htr5	5-hydroxytryptamine (serotonin) receptor 5A	protein-coding	0.005000	0.477612	
mm_134493.1	chr16	18776565	18776765	-	1	NA	NA	NA	-182	NM_013805	12741	Mm.22768	NM_013805	ENSMUSG00000041378	Cldn5	AI854493|MBEC1|Tmvcf	claudin 5	protein-coding	0.045000	0.587065	
mm_14597.1	chr2	136058154	136058354	+	1	NA	NA	NA	327	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.060000	0.611940	
mm_10632.1	chr2	19909738	19909938	+	1	NA	NA	NA	251776	NM_027715	71198	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	0.095000	0.696517	
mm_38721.1	chr4	145234714	145234914	-	1	NA	NA	NA	12056	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.000000	0.388060	
mm_90875.1	chr10	9071052	9071252	-	1	NA	NA	NA	-185082	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.000000	0.383085	
mm_139730.1	chr17	57477148	57477348	+	1	NA	NA	NA	68066	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.000000	0.402985	
mm_36322.1	chr4	70378085	70378285	-	1	NA	NA	NA	32250	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.025000	0.417910	
mm_14140.1	chr2	126498971	126499171	+	1	NA	NA	NA	-7518	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	0.015000	0.422886	
mm_14411.1	chr2	130295092	130295292	+	1	NA	NA	NA	-747	NM_001110513	228598	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	0.115000	0.805970	
mm_76280.1	chr8	84191984	84192184	-	1	NA	NA	NA	-13123	NR_029821	723819		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	0.015000	0.601990	
mm_9172.1	chr1	170978529	170978729	-	1	NA	NA	NA	-2558	NM_010187	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.020000	0.577114	
mm_168064.1	chr10	102432852	102433052	-	1	NA	NA	NA	57466	NM_024435	67405	Mm.64201	NM_024435	ENSMUSG00000019890	Nts	5033428E16Rik|NMN-125|NN|NT|NT/N|NTS1	neurotensin	protein-coding	0.050000	0.631841	
mm_170235.1	chr17	87590181	87590381	-	1	NA	NA	NA	-45698	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.045000	0.502488	-29(CTTTAAATACCC,+,0.00)
mm_18611.1	chr2	68386584	68386784	-	1	NA	NA	NA	85297	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.045000	0.512438	
mm_77376.1	chr8	119834319	119834519	-	1	NA	NA	NA	6160	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.010000	0.452736	
mm_48976.1	chr6	4754335	4754535	+	1	NA	NA	NA	7129	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.020000	0.457711	
mm_57362.1	chr6	124762971	124763171	-	1	NA	NA	NA	-6584	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.055000	0.606965	
mm_34778.1	chr4	154012190	154012390	+	1	NA	NA	NA	487	NM_201226	72946	Mm.260690	NM_201226	ENSMUSG00000029028	Lrrc47	2900010D03Rik|AA960559|mKIAA1185	leucine rich repeat containing 47	protein-coding	0.095000	0.711443	
mm_103556.1	chr11	77720841	77721041	-	1	NA	NA	NA	4352	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.025000	0.487562	
mm_105360.1	chr11	103115311	103115511	-	1	NA	NA	NA	-914	NM_138753	192231	Mm.8763	NM_138753	ENSMUSG00000048878	Hexim1	7330426E13Rik|CLP-1|Clp1|HIS1	hexamethylene bis-acetamide inducible 1	protein-coding	0.060000	0.626866	
mm_73410.1	chr8	106052606	106052806	+	1	NA	NA	NA	-6897	NM_010901	18021	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.020000	0.527363	
mm_137641.1	chr17	28523195	28523395	+	1	NA	NA	NA	-7566	NM_026290	67645	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.120000	0.726368	
mm_109503.1	chr12	111452017	111452217	+	1	NA	NA	NA	9456	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.000000	0.467662	
mm_114522.1	chr13	73328432	73328632	+	1	NA	NA	NA	-50	NM_010888	407785	Mm.29897	NM_010888	ENSMUSG00000021606	Ndufs6	BC059730|IP13	NADH dehydrogenase (ubiquinone) Fe-S protein 6	protein-coding	0.085000	0.616915	
mm_7816.1	chr1	131911016	131911216	-	1	NA	NA	NA	658	NM_001145804	98415	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.110000	0.726368	
mm_152830.1	chr19	23142295	23142495	-	1	NA	NA	NA	1169	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.045000	0.616915	
mm_70014.1	chr7	142496853	142497053	-	1	NA	NA	NA	-1883	NM_001347549	21957	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	0.025000	0.537313	
mm_116920.1	chr13	55528471	55528671	-	1	NA	NA	NA	-33	NM_013739	27261	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	0.030000	0.597015	
mm_89487.1	chr10	93682382	93682582	+	1	NA	NA	NA	840	NR_038017	100504069	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	OTTMUSG00000027787	predicted gene 15915	ncRNA	0.030000	0.487562	
mm_169056.1	chr13	22788495	22788695	+	1	NA	NA	NA	-15270	NM_134218	171252	Mm.390562	NM_134218	ENSMUSG00000071493	Vmn1r208	V1rh9|Vmn1r208-ps	vomeronasal 1 receptor 208	protein-coding	0.000000	0.407960	
mm_85178.1	chr9	96611318	96611518	-	1	NA	NA	NA	20085	NM_053268	114713	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.015000	0.323383	
mm_96234.1	chr11	62551353	62551553	+	1	NA	NA	NA	-51	NR_002875	218963	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	0.090000	0.597015	18(GCATAAATAGCG,+,0.00)
mm_95430.1	chr11	50202735	50202935	+	1	NA	NA	NA	7985	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.015000	0.537313	
mm_133473.1	chr16	89288231	89288431	+	1	NA	NA	NA	82470	NM_001163615	622935	Mm.459837	NM_001163615	ENSMUSG00000091039	Krtap20-2	1190004K03Rik|EG622935|Gm6371	keratin associated protein 20-2	protein-coding	0.005000	0.472637	-34(AGGTATATAAGA,-,0.00)
mm_141563.1	chr17	32229506	32229706	-	1	NA	NA	NA	-12314	NR_102329	100043434		NR_102329		Gm4432	-	predicted gene 4432	pseudo	0.015000	0.547264	
mm_87581.1	chr10	56504428	56504628	+	1	NA	NA	NA	127228	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.040000	0.577114	
mm_92064.1	chr10	62514296	62514496	-	1	NA	NA	NA	-6641	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.015000	0.522388	
mm_77710.1	chr8	126591893	126592093	-	1	NA	NA	NA	1443	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.010000	0.507463	
mm_115769.1	chr13	19306209	19306409	-	1	NA	NA	NA	89504	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.472637	
mm_95763.1	chr11	54907046	54907246	+	1	NA	NA	NA	4292	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.025000	0.472637	54(TTCCTTTTAAGC,-,0.00),56(CCTTTTAAGCAG,+,0.00)
mm_61658.1	chr7	80583167	80583367	+	1	NA	NA	NA	-48148	NM_001042527	12144	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ helicase-like	protein-coding	0.015000	0.452736	
mm_120168.1	chr14	60768008	60768208	+	1	NA	NA	NA	-26	NM_183175	239126	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	0.010000	0.502488	
mm_13307.1	chr2	102658555	102658755	+	1	NA	NA	NA	-28	NM_001077514	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.040000	0.507463	
mm_89890.1	chr10	110660012	110660212	+	1	NA	NA	NA	59462	NR_028438	109335	Mm.367727	NR_028438		9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA	0.010000	0.462687	
mm_13247.1	chr2	98663616	98663816	+	1	NA	NA	NA	1196059	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.015000	0.378109	
mm_63424.1	chr7	127471617	127471817	+	1	NA	NA	NA	103	NM_145589	233895	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.065000	0.671642	
mm_59958.1	chr7	30427365	30427565	+	1	NA	NA	NA	4161	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.040000	0.636816	
mm_123110.1	chr14	55884195	55884395	-	1	NA	NA	NA	-39	NM_019820	56410	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0.010000	0.577114	
mm_55099.1	chr6	49733396	49733596	-	1	NA	NA	NA	-89214	NM_023456	109648	Mm.154796	NM_023456	ENSMUSG00000029819	Npy	0710005A05Rik	neuropeptide Y	protein-coding	0.020000	0.512438	-34(GAGTATAAATAG,-,0.00)
mm_154780.1	chrX	12977775	12977975	+	1	NA	NA	NA	41002	NM_001272033	245350	Mm.302695	NM_001272033		AA414768	OTTMUSG00000017000	expressed sequence AA414768	protein-coding	0.020000	0.537313	
mm_160589.1	chr9	65890262	65890462	+	1	NA	NA	NA	39	NM_026515	68026	Mm.351273	NM_026515	ENSMUSG00000040204	Pclaf	2810417H13Rik|AA409629|Ns5apt9|Ns5atp9|PAF15|Paf|mKIAA0101|p15(PAF)	PCNA clamp associated factor	protein-coding	0.065000	0.507463	-31(CCATTTAAACGG,+,0.00)
mm_50186.1	chr6	41684256	41684456	+	1	NA	NA	NA	-75	NM_029671	76606	Mm.272520	NM_029671	ENSMUSG00000029867	1700034O15Rik	-	RIKEN cDNA 1700034O15 gene	protein-coding	0.010000	0.447761	-96(TGGTATATAAGG,-,0.00)
mm_17019.1	chr2	18998011	18998211	-	1	NA	NA	NA	10	NM_008845	18718	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.165000	0.825871	
mm_104360.1	chr11	94309558	94309758	-	1	NA	NA	NA	12253	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.020000	0.333333	-73(GTTTTTAAAGTT,+,0.00)
mm_96841.1	chr11	70026734	70026934	+	1	NA	NA	NA	8229	NM_007864	13385	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs, large homolog 4 (Drosophila)	protein-coding	0.040000	0.671642	
mm_87751.1	chr10	60277441	60277641	+	1	NA	NA	NA	-87	NM_001146123	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.085000	0.601990	
mm_142053.1	chr17	35638046	35638246	-	1	NA	NA	NA	5549	NM_001033366	268949	Mm.296301	NM_001033366	ENSMUSG00000073408	Dpcr1	Gm630	diffuse panbronchiolitis critical region 1 (human)	protein-coding	0.025000	0.517413	
mm_119047.1	chr14	30626500	30626700	+	1	NA	NA	NA	-392	NM_011103	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.050000	0.671642	
mm_27266.1	chr3	38558759	38558959	-	1	NA	NA	NA	-74043	NM_001167883	99696	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.010000	0.452736	
mm_102708.1	chr11	66526902	66527102	-	1	NA	NA	NA	-876	NM_001034874	380702	Mm.351764	NM_001034874	ENSMUSG00000053930	Shisa6	Gm879|ckamp52	shisa family member 6	protein-coding	0.025000	0.577114	
mm_117295.1	chr13	66932942	66933142	-	1	NA	NA	NA	30	NM_025547	66410	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	0.135000	0.701493	
mm_131705.1	chr16	20732683	20732883	+	1	NA	NA	NA	-344	NM_001278041	12667	Mm.20457	NM_009893	ENSMUSG00000006958	Chrd	Chd	chordin	protein-coding	0.080000	0.746269	
mm_84848.1	chr9	78443067	78443267	-	1	NA	NA	NA	70	NR_125721	214763	Mm.101559	NM_173386	ENSMUSG00000032344	Mb21d1	E330016A19Rik|cGAS	Mab-21 domain containing 1	protein-coding	0.100000	0.562189	
mm_67070.1	chr7	67803411	67803611	-	1	NA	NA	NA	-15	NR_045954	73904	Mm.70992	NR_045954	ENSMUSG00000097697	4833412C05Rik	Bigheart	RIKEN cDNA 4833412C05 gene	ncRNA	0.025000	0.587065	
mm_78824.1	chr9	44101972	44102172	+	1	NA	NA	NA	302	NM_147126	259172	Mm.227110	NM_147126	ENSMUSG00000034739	Mfrp	rd6	membrane frizzled-related protein	protein-coding	0.030000	0.587065	
mm_164377.1	chr16	27849739	27849939	+	1	NA	NA	NA	-91	NR_033475	100038623	Mm.387135	NR_033475		Gm10823	ENSMUSG00000075290	predicted gene 10823	ncRNA	0.005000	0.407960	
mm_47881.1	chr5	134703085	134703285	-	1	NA	NA	NA	-14595	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.005000	0.532338	
mm_152728.1	chr19	18748417	18748617	-	1	NA	NA	NA	-1466	NM_153417	225997	Mm.215171	NM_153417	ENSMUSG00000024727	Trpm6	CHAK2|TRPM6/CHAK2	transient receptor potential cation channel, subfamily M, member 6	protein-coding	0.010000	0.427861	-35(GCTCTTATAAGG,-,0.00),-33(TCTTATAAGGCA,+,0.00)
mm_3506.1	chr1	150106996	150107196	+	1	NA	NA	NA	7065	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.015000	0.353234	
mm_33187.1	chr4	126140740	126140940	+	1	NA	NA	NA	-7163	NM_172145	230752	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0.005000	0.462687	
mm_108750.1	chr12	88917174	88917374	+	1	NA	NA	NA	-36116	NM_172544	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.010000	0.308458	
mm_102817.1	chr11	68973273	68973473	-	1	NA	NA	NA	482	NM_021329	57785	Mm.143774	NM_021329	ENSMUSG00000032892	Rangrf	2400006H24Rik|Mog1|Rangnrf	RAN guanine nucleotide release factor	protein-coding	0.060000	0.626866	
mm_72763.1	chr8	85515751	85515951	+	1	NA	NA	NA	23234	NM_173866	108682	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.025000	0.552239	
mm_96525.1	chr11	68496594	68496794	+	1	NA	NA	NA	-6325	NM_001004435	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.000000	0.482587	
mm_39872.1	chr5	31076908	31077108	+	1	NA	NA	NA	16519	NM_011773	22784	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.030000	0.611940	
mm_166096.1	chr4	141723347	141723547	-	1	NA	NA	NA	-28	NM_001017966	68817	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	0.165000	0.781095	
mm_147732.1	chr18	61035697	61035897	-	1	NA	NA	NA	402	NM_009880	12590	Mm.144448	NM_009880	ENSMUSG00000024619	Cdx1	Cdx|Cdx-1	caudal type homeobox 1	protein-coding	0.130000	0.781095	
mm_153654.1	chr19	44394693	44394893	-	1	NA	NA	NA	12916	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.005000	0.422886	
mm_171395.1	chr4	12233529	12233729	+	1	NA	NA	NA	-61614	NM_026558	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.000000	0.527363	
mm_36136.1	chr4	59349866	59350066	-	1	NA	NA	NA	88667	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.015000	0.497512	
mm_73813.1	chr8	117379297	117379497	+	1	NA	NA	NA	30227	NM_028941	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.035000	0.631841	
mm_105102.1	chr11	100956824	100957024	-	1	NA	NA	NA	13693	NM_008986	19285	Mm.21864	NM_008986	ENSMUSG00000004044	Ptrf	2310075E07Rik|AW546441|Cav-p60|Cavin	polymerase I and transcript release factor	protein-coding	0.005000	0.432836	-56(CCTTTTATACCA,+,0.00)
mm_121480.1	chr14	121035588	121035788	+	1	NA	NA	NA	114	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.170000	0.830846	
mm_105591.1	chr11	106736326	106736526	-	1	NA	NA	NA	-14800	NM_001271375	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.015000	0.502488	
mm_2196.1	chr1	89454803	89455003	+	1	NA	NA	NA	92	NM_001037136	347722	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.150000	0.805970	
mm_85542.1	chr9	106682107	106682307	-	1	NA	NA	NA	3609	NM_011573	21767	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.005000	0.567164	
mm_132403.1	chr16	35001359	35001559	+	1	NA	NA	NA	-20962	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.015000	0.472637	
mm_148729.1	chr19	5877762	5877962	+	1	NA	NA	NA	-604	NM_134154	107375	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0.025000	0.482587	-33(GTTTTTAAAGAA,+,0.00)
mm_158507.1	chrX	142852414	142852614	-	1	NA	NA	NA	113514	NR_030523	723976		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	0.000000	0.278607	-72(CCTTTTAAATGT,+,0.00)
mm_110820.1	chr12	72408614	72408814	-	1	NA	NA	NA	340	NM_001286448	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.105000	0.721393	
mm_30268.1	chr3	146770534	146770734	-	1	NA	NA	NA	59	NM_001164199	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.045000	0.472637	63(GCATTTAGGCGC,+,0.00)
mm_62716.1	chr7	110772643	110772843	+	1	NA	NA	NA	139	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.010000	0.522388	
mm_146018.1	chr18	69475500	69475700	+	1	NA	NA	NA	129879	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.010000	0.388060	
mm_28620.1	chr3	95015339	95015539	-	1	NA	NA	NA	-201	NM_030074	78266	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	0.095000	0.686567	
mm_149439.1	chr19	11478200	11478400	+	1	NA	NA	NA	8932	NM_028595	73656	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.010000	0.432836	
mm_34439.1	chr4	147868763	147868963	+	1	NA	NA	NA	-116	NM_010244	14349	Mm.422607	NM_010244	ENSMUSG00000070583	Fv1	Fv-1|Rv-1|Rv1	Friend virus susceptibility 1	protein-coding	0.050000	0.527363	
mm_28718.1	chr3	95659469	95659669	-	1	NA	NA	NA	848	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.075000	0.641791	
mm_20570.1	chr2	131084983	131085183	-	1	NA	NA	NA	1682	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.035000	0.606965	
mm_68673.1	chr7	118976583	118976783	-	1	NA	NA	NA	18528	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.020000	0.552239	
mm_118521.1	chr14	14716878	14717078	+	1	NA	NA	NA	13953	NM_001033270	218756	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.015000	0.492537	
mm_111433.1	chr12	91788271	91788471	-	1	NA	NA	NA	-1935	NM_175367	108800	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.025000	0.502488	
mm_21184.1	chr2	155129926	155130126	-	1	NA	NA	NA	-3455	NM_001243712	16396	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	0.005000	0.412935	
mm_32110.1	chr4	98923664	98923864	+	1	NA	NA	NA	-46	NM_001301414	230484	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	0.150000	0.721393	
mm_38647.1	chr4	143267987	143268187	-	1	NA	NA	NA	31477	NM_010329	14726	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding	0.010000	0.432836	
mm_18341.1	chr2	58156711	58156911	-	1	NA	NA	NA	3311	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.010000	0.532338	
mm_46668.1	chr5	108759962	108760162	-	1	NA	NA	NA	-3780	NR_040691	73295	Mm.416858	NR_040691	ENSMUSG00000101762	1700047L14Rik	-	RIKEN cDNA 1700047L14 gene	ncRNA	0.005000	0.388060	
mm_69823.1	chr7	141265835	141266035	-	1	NA	NA	NA	489	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.025000	0.507463	
mm_61855.1	chr7	88307954	88308154	+	1	NA	NA	NA	29969	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.005000	0.363184	
mm_110355.1	chr12	40014388	40014588	-	1	NA	NA	NA	22888	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.020000	0.452736	
mm_136746.1	chr17	8500372	8500572	+	1	NA	NA	NA	-26329	NM_001290707	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.005000	0.402985	
mm_14912.1	chr2	150667303	150667503	+	1	NA	NA	NA	-91	NR_040331	109344	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	0.025000	0.547264	
mm_79348.1	chr9	53667040	53667240	+	1	NA	NA	NA	367	NM_001161618	75717	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0.135000	0.716418	
mm_108276.1	chr12	78862447	78862647	+	1	NA	NA	NA	475	NM_026114	13665	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	0.025000	0.422886	
mm_161783.1	chr17	43630087	43630287	-	1	NA	NA	NA	112	NM_001161366	210510	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	0.120000	0.741294	
mm_107374.1	chr12	32953763	32953963	+	1	NA	NA	NA	-74	NR_044986	74076	Mm.50114	NR_044986	ENSMUSG00000097494	4933406C10Rik	-	RIKEN cDNA 4933406C10 gene	ncRNA	0.100000	0.691542	
mm_157591.1	chrX	53114461	53114661	-	1	NA	NA	NA	-156	NM_019538	56096	Mm.274842	NM_019538	ENSMUSG00000061082	Plac1	DXWsu72e|Epcs26|Oosp2l	placental specific protein 1	protein-coding	0.015000	0.492537	
mm_167059.1	chr7	90071576	90071776	+	1	NA	NA	NA	42517	NR_110364	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15	RIKEN cDNA E230029C05 gene	ncRNA	0.025000	0.442786	
mm_102897.1	chr11	69423810	69424010	-	1	NA	NA	NA	-10235	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.015000	0.442786	
mm_116916.1	chr13	55512263	55512463	-	1	NA	NA	NA	1083	NM_026131	67399	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	0.015000	0.572139	
mm_42700.1	chr5	119884220	119884420	+	1	NA	NA	NA	49657	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.040000	0.572139	
mm_165572.1	chr3	19992707	19992907	+	1	NA	NA	NA	35753	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.000000	0.412935	-67(GGCTCTTTAAGC,-,0.00)
mm_42885.1	chr5	122372404	122372604	+	1	NA	NA	NA	-4	NM_024216	68080	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	0.100000	0.611940	
mm_121841.1	chr14	20607786	20607986	-	1	NA	NA	NA	10468	NM_030180	78787	Mm.301173	NM_030180	ENSMUSG00000034235	Usp54	4930429G18Rik|AI115571|C030002J06Rik	ubiquitin specific peptidase 54	protein-coding	0.005000	0.378109	
mm_139124.1	chr17	47504855	47505055	+	1	NA	NA	NA	-96	NM_001081636	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.045000	0.616915	
mm_41572.1	chr5	93171276	93171476	+	1	NA	NA	NA	35119	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.025000	0.412935	
mm_9190.1	chr1	171136054	171136254	-	1	NA	NA	NA	14449	NM_025321	66052	Mm.198138	NM_025321	ENSMUSG00000058076	Sdhc	0610010E03Rik|AI316496|AU019277	succinate dehydrogenase complex, subunit C, integral membrane protein	protein-coding	0.010000	0.442786	
mm_34084.1	chr4	138831677	138831877	+	1	NA	NA	NA	-80	NR_002926	18780	Mm.4675	NM_011108	ENSMUSG00000058908	Pla2g2a	EF|Mom1|Pla2|sPLA2|sPla2-IIA	phospholipase A2, group IIA (platelets, synovial fluid)	protein-coding	0.010000	0.522388	49(AGCTATTTAAGG,-,0.00),51(CTATTTAAGGGC,+,0.00)
mm_163911.1	chr14	32085452	32085652	-	1	NA	NA	NA	140	NR_104303	105638	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	0.100000	0.616915	
mm_117206.1	chr13	64084388	64084588	-	1	NA	NA	NA	4713	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.000000	0.502488	
mm_68948.1	chr7	126562983	126563183	-	1	NA	NA	NA	3283	NM_146200	56347	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.030000	0.457711	
mm_38.1	chr1	6453748	6453948	+	1	NA	NA	NA	-33383	NM_001244693	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.318408	
mm_107606.1	chr12	49384282	49384482	+	1	NA	NA	NA	1375	NM_008241	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.140000	0.771144	
mm_45245.1	chr5	57718861	57719061	-	1	NA	NA	NA	880	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.055000	0.606965	
mm_21771.1	chr2	164844648	164844848	-	1	NA	NA	NA	10975	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.045000	0.597015	
mm_33128.1	chr4	124850662	124850862	+	1	NA	NA	NA	3	NM_153566	230734	Mm.258568	NM_153566	ENSMUSG00000028889	Yrdc	AV303379|BC023823|IRIP|ITIP	yrdC domain containing (E.coli)	protein-coding	0.165000	0.756219	-83(GTCCCTTTAAGC,-,0.00),-81(CCCTTTAAGCGG,+,0.00)
mm_21681.1	chr2	164426143	164426343	-	1	NA	NA	NA	16945	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.040000	0.587065	
mm_71556.1	chr8	48843423	48843623	+	1	NA	NA	NA	-168833	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.090000	0.666667	
mm_122832.1	chr14	54712303	54712503	-	1	NA	NA	NA	-229	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.015000	0.527363	
mm_136630.1	chr17	5661606	5661806	+	1	NA	NA	NA	-136951	NR_045081	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.030000	0.477612	
mm_20108.1	chr2	121116360	121116560	-	1	NA	NA	NA	-6669	NM_001160424	640543	Mm.478785	NM_001160424	ENSMUSG00000079103	Tgm7	TGMZ|TGz	transglutaminase 7	protein-coding	0.020000	0.532338	
mm_52593.1	chr6	116673833	116674033	+	1	NA	NA	NA	-97	NM_178045	213391	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.055000	0.592040	
mm_122163.1	chr14	31400909	31401109	-	1	NA	NA	NA	16668	NM_001347585	24056	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.015000	0.562189	
mm_17241.1	chr2	25608367	25608567	-	1	NA	NA	NA	-21	NM_001024616	227624	Mm.29600	NM_001024616	ENSMUSG00000015087	Rabl6	B230208H17Rik|Rbel1|Rbel1a|Rbel1b|parf	RAB, member RAS oncogene family-like 6	protein-coding	0.120000	0.706468	-75(TGCTAGAAAAGG,-,0.00)
mm_62147.1	chr7	97129110	97129310	+	1	NA	NA	NA	47459	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.005000	0.407960	
mm_91214.1	chr10	21785757	21785957	-	1	NA	NA	NA	95012	NR_045843	432436	Mm.244553	NM_001004162		Gm5420	EG432436	predicted gene 5420	ncRNA	0.010000	0.467662	
mm_43796.1	chr5	142816633	142816833	+	1	NA	NA	NA	654	NM_178242	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.060000	0.477612	
mm_114965.1	chr13	97088463	97088663	+	1	NA	NA	NA	16920	NM_001100458	320557	Mm.458280	NM_001100458	ENSMUSG00000041817	Fam169a	B230112C05Rik|SLAP75	family with sequence similarity 169, member A	protein-coding	0.010000	0.437811	
mm_101696.1	chr11	40750949	40751149	-	1	NA	NA	NA	4237	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.010000	0.358209	
mm_101404.1	chr11	26593889	26594089	-	1	NA	NA	NA	-69	NM_001252447	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.005000	0.472637	
mm_150575.1	chr19	40275948	40276148	+	1	NA	NA	NA	-4432	NM_016861	54132	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	0.025000	0.552239	
mm_16126.1	chr2	170184751	170184951	+	1	NA	NA	NA	-42176	NM_001159683	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.035000	0.487562	
mm_169930.1	chr16	57391508	57391708	-	1	NA	NA	NA	38331	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.125000	0.726368	
mm_41526.1	chr5	92602945	92603145	+	1	NA	NA	NA	-6	NM_175096	52331	Mm.21965	NM_175096	ENSMUSG00000047963	Stbd1	D530019K15Rik|D5Ertd593e	starch binding domain 1	protein-coding	0.095000	0.716418	-32(AACCTTAAAAGG,-,0.00),-30(CCTTAAAAGGAT,+,0.00)
mm_4067.1	chr1	166130318	166130518	+	1	NA	NA	NA	-42	NM_021610	59290	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197	glycoprotein A33 (transmembrane)	protein-coding	0.005000	0.611940	
mm_96352.1	chr11	66957830	66958030	+	1	NA	NA	NA	36	NR_130646	71576	Mm.340077	NR_130315	ENSMUSG00000085683	9130409J20Rik	-	RIKEN cDNA 9130409J20 gene	ncRNA	0.010000	0.487562	
mm_71536.1	chr8	46986838	46987038	+	1	NA	NA	NA	51	NM_177304	320981	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.005000	0.582090	
mm_132783.1	chr16	44943571	44943771	+	1	NA	NA	NA	-7	NM_001128133	74603	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0.010000	0.457711	
mm_152308.1	chr19	9559126	9559326	-	1	NA	NA	NA	22	NR_073559	619371	Mm.316894	NM_001030317		Stxbp3-ps	Munc18c(L)|Stxbp3-1|Stxbp3b	syntaxin-binding protein 3, pseudogene	pseudo	0.065000	0.601990	
mm_36956.1	chr4	109138560	109138760	-	1	NA	NA	NA	-20624	NM_001134791	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.020000	0.547264	
mm_62655.1	chr7	107693173	107693373	+	1	NA	NA	NA	64759	NM_001205227	320635	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	0.040000	0.512438	
mm_152577.1	chr19	11601994	11602194	-	1	NA	NA	NA	2710	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.000000	0.467662	
mm_92141.1	chr10	67011088	67011288	-	1	NA	NA	NA	6113	NR_110511	102634101	Mm.445258	NR_110511		Gm31763	-	predicted gene, 31763	ncRNA	0.010000	0.427861	
mm_128241.1	chr15	36608606	36608806	-	1	NA	NA	NA	267	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.110000	0.651741	
mm_162588.1	chr1	180943964	180944164	+	1	NA	NA	NA	1546	NM_144794	208795	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.005000	0.552239	
mm_126855.1	chr15	89212210	89212410	+	1	NA	NA	NA	751	NM_027805	71474	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	0.030000	0.572139	
mm_4737.1	chr1	181842432	181842632	+	1	NA	NA	NA	-131	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.140000	0.706468	
mm_146523.1	chr18	4353151	4353351	-	1	NA	NA	NA	-296	NR_040328	73915	Mm.482777	NR_040328		4833419F23Rik	-	RIKEN cDNA 4833419F23 gene	ncRNA	0.075000	0.671642	
mm_13301.1	chr2	102550006	102550206	+	1	NA	NA	NA	85	NM_173749	210622	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	0.055000	0.636816	
mm_58429.1	chr7	3297334	3297534	+	1	NA	NA	NA	4406	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.025000	0.542289	
mm_20393.1	chr2	129174727	129174927	-	1	NA	NA	NA	5846	NR_045264	100048701	Mm.428544	NR_045264	ENSMUSG00000084826	AI847159	OTTMUSG00000015420	expressed sequence AI847159	ncRNA	0.015000	0.507463	
mm_109220.1	chr12	108792867	108793067	+	1	NA	NA	NA	-344	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.120000	0.711443	
mm_84226.1	chr9	61946674	61946874	-	1	NA	NA	NA	25	NM_024245	71819	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.115000	0.716418	
mm_8490.1	chr1	153808066	153808266	-	1	NA	NA	NA	35975	NM_001243223	240816	Mm.329340	NM_001243223	ENSMUSG00000042641	Rgsl1	4930415K13Rik|Gm202|Rgsl2	regulator of G-protein signaling like 1	protein-coding	0.020000	0.462687	
mm_135643.1	chr16	52366351	52366551	-	1	NA	NA	NA	86630	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.442786	
mm_88313.1	chr10	75517920	75518120	+	1	NA	NA	NA	-22	NM_026095	67332	Mm.45151	NM_026095	ENSMUSG00000020180	Snrpd3	1700043E15Rik|2310009E13Rik|AW046420|SMD3	small nuclear ribonucleoprotein D3	protein-coding	0.065000	0.552239	
mm_72821.1	chr8	88199109	88199309	+	1	NA	NA	NA	-4	NM_001164499	214627	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0.180000	0.791045	
mm_27743.1	chr3	69126763	69126963	-	1	NA	NA	NA	229	NM_008467	16649	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	0.140000	0.746269	
mm_162968.1	chr11	10545036	10545236	+	1	NA	NA	NA	-568880	NM_177033	319922	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0.005000	0.412935	88(TCCTTTAAGGTC,+,0.00)
mm_66376.1	chr7	43660059	43660259	-	1	NA	NA	NA	2	NM_031181	83382	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.005000	0.572139	
mm_31797.1	chr4	63979841	63980041	+	1	NA	NA	NA	67074	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding	0.005000	0.517413	
mm_154458.1	chrM	2750	2950	-	1	NA	NA	NA	NA	NA									0.035000	0.383085	
mm_109369.1	chr12	109646347	109646547	+	1	NA	NA	NA	-3170	NR_046304	100861570		NR_046304	ENSMUSG00000084549	DQ267100	-	snoRNA DQ267100	snoRNA	0.005000	0.283582	
mm_150081.1	chr19	29387033	29387233	+	1	NA	NA	NA	19695	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.343284	
mm_96869.1	chr11	70167112	70167312	+	1	NA	NA	NA	589	NM_010796	17312	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	0.015000	0.457711	
mm_1886.1	chr1	85673615	85673815	+	1	NA	NA	NA	23727	NM_001313714	20684	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.010000	0.422886	
mm_45754.1	chr5	86783108	86783308	-	1	NA	NA	NA	-21058	NM_001347375	231386	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.025000	0.482587	
mm_67000.1	chr7	64907480	64907680	-	1	NA	NA	NA	-34540	NM_023239	66647	Mm.19944	NM_023239	ENSMUSG00000070520	Ndnl2	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Nsmce3|mage-g1	necdin-like 2	protein-coding	0.000000	0.353234	
mm_29599.1	chr3	119783411	119783611	-	1	NA	NA	NA	-123	NM_019550	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.100000	0.731343	
mm_14271.1	chr2	128708670	128708870	+	1	NA	NA	NA	9773	NM_008587	17289	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.005000	0.417910	
mm_41573.1	chr5	93172378	93172578	+	1	NA	NA	NA	34017	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.000000	0.512438	
mm_61086.1	chr7	51622378	51622578	+	1	NA	NA	NA	648	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.020000	0.492537	
mm_74234.1	chr8	124340468	124340668	+	1	NA	NA	NA	93368	NM_171824	209966	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	0.010000	0.542289	
mm_87718.1	chr10	60106090	60106290	+	1	NA	NA	NA	-67	NM_052994	94214	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.035000	0.482587	
mm_89416.1	chr10	90834138	90834338	+	1	NA	NA	NA	4395	NM_001347053	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.005000	0.452736	
mm_23170.1	chr3	40745383	40745583	+	1	NA	NA	NA	-130	NM_011020	18415	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0.145000	0.751244	
mm_135514.1	chr16	48771944	48772144	-	1	NA	NA	NA	-88	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.010000	0.368159	37(CGGCATTTAAGG,-,0.00)
mm_113662.1	chr13	42681597	42681797	+	1	NA	NA	NA	898	NM_001302635	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.020000	0.348259	
mm_34572.1	chr4	150052532	150052732	+	1	NA	NA	NA	-15822	NR_029751	723848		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0.010000	0.303483	
mm_82413.1	chr9	14859991	14860191	-	1	NA	NA	NA	-119	NM_001310734	14608	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0.080000	0.681592	-86(GCCTATAGGGCC,+,0.00)
mm_107691.1	chr12	55377049	55377249	+	1	NA	NA	NA	6454	NR_035430	100316807		NR_035430	ENSMUSG00000080645	Mir1198	Mirn1198|mmu-mir-1198	microRNA 1198	ncRNA	0.015000	0.497512	
mm_133289.1	chr16	77483480	77483680	+	1	NA	NA	NA	-115356	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.005000	0.313433	
mm_158237.1	chrX	106485296	106485496	-	1	NA	NA	NA	-167	NM_001007580	333564	Mm.298000	NM_001007580	ENSMUSG00000033737	Fndc3c1	Fndc3c|Gm784	fibronectin type III domain containing 3C1	protein-coding	0.070000	0.661692	
mm_9559.1	chr1	173971619	173971819	-	1	NA	NA	NA	11125	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.000000	0.353234	60(TAGTATAAAAAG,-,0.00)
mm_32214.1	chr4	101550712	101550912	+	1	NA	NA	NA	218	NM_001164583	72685	Mm.76494	NM_198412	ENSMUSG00000028528	Dnajc6	2810027M23Rik|mKIAA0473	DnaJ heat shock protein family (Hsp40) member C6	protein-coding	0.125000	0.716418	
mm_76230.1	chr8	83573358	83573558	-	1	NA	NA	NA	6700	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.020000	0.606965	-82(GCCTTTAGAGGC,+,0.00)
mm_57801.1	chr6	129331689	129331889	-	1	NA	NA	NA	-8	NM_199034	381816	Mm.46114	NM_199034	ENSMUSG00000047720	4922502D21Rik	Clec2m|Gm1074|SPATA78	RIKEN cDNA 4922502D21 gene	protein-coding	0.030000	0.547264	
mm_75586.1	chr8	61550014	61550214	-	1	NA	NA	NA	41055	NM_001293774	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.105000	0.746269	
mm_100383.1	chr11	119314743	119314943	+	1	NA	NA	NA	56	NM_130886	170720	Mm.130832	NM_130886	ENSMUSG00000013483	Card14	Bimp2|CARMA2	caspase recruitment domain family, member 14	protein-coding	0.025000	0.572139	
mm_164772.1	chr17	88583604	88583804	+	1	NA	NA	NA	-42851	NM_029858	77057	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.025000	0.467662	
mm_31366.1	chr4	47288345	47288545	+	1	NA	NA	NA	-64777	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.015000	0.557214	
mm_31722.1	chr4	62674120	62674320	+	1	NA	NA	NA	246	NM_001310706	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.015000	0.482587	
mm_162121.1	chrX	68892950	68893150	-	1	NA	NA	NA	3	NM_001098842	627927	Mm.391264	NM_001098842	ENSMUSG00000056815	Gm6812	EG627927	predicted gene 6812	protein-coding	0.015000	0.472637	
mm_33635.1	chr4	132972239	132972439	+	1	NA	NA	NA	-1756	NM_010208	14191	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.015000	0.572139	
mm_83123.1	chr9	40411633	40411833	-	1	NA	NA	NA	44031	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.005000	0.383085	
mm_150325.1	chr19	34574316	34574516	+	1	NA	NA	NA	-9113	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.005000	0.482587	
mm_116079.1	chr13	28419886	28420086	-	1	NA	NA	NA	277502	NM_023746	28078	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0.055000	0.542289	
mm_93310.1	chr10	98856994	98857194	-	1	NA	NA	NA	-58058	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.005000	0.278607	25(CCTTTTAAACTT,+,0.00),78(CCTTTTAACGTC,+,0.00)
mm_143630.1	chr17	78915756	78915956	-	1	NA	NA	NA	-643	NM_001177403	68554	Mm.391820	NM_001177402	ENSMUSG00000062691	Cebpzos	1110001A16Rik	CCAAT/enhancer binding protein (C/EBP), zeta, opposite strand	protein-coding	0.020000	0.477612	
mm_92670.1	chr10	80522008	80522208	-	1	NA	NA	NA	17016	NM_026094	67331	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0.030000	0.567164	
mm_55135.1	chr6	51270819	51271019	-	1	NA	NA	NA	-1009	NR_029719	387166		NR_029719	ENSMUSG00000065505	Mir148a	Mirn148|Mirn148a|mir-148a	microRNA 148a	ncRNA	0.105000	0.681592	
mm_8442.1	chr1	152810513	152810713	-	1	NA	NA	NA	10460	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.010000	0.512438	
mm_95790.1	chr11	54960467	54960667	+	1	NA	NA	NA	2373	NM_021327	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.020000	0.537313	
mm_101022.1	chr11	8577140	8577340	-	1	NA	NA	NA	87295	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.015000	0.462687	
mm_127812.1	chr15	5098824	5099024	-	1	NA	NA	NA	9609	NM_001163138	239319	Mm.31252	NM_001163138	ENSMUSG00000041849	Card6	D730008L15	caspase recruitment domain family, member 6	protein-coding	0.005000	0.542289	
mm_155029.1	chrX	42068127	42068327	+	1	NA	NA	NA	-171	NM_001301639	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.050000	0.597015	-6(TTTTTAAAAGTC,+,0.00)
mm_31141.1	chr4	43383019	43383219	+	1	NA	NA	NA	1137	NM_001037709	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.010000	0.348259	
mm_103144.1	chr11	70239669	70239869	-	1	NA	NA	NA	83	NM_173742	52898	Mm.29852	NM_173742	ENSMUSG00000040904	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	0.070000	0.691542	
mm_102240.1	chr11	54982647	54982847	-	1	NA	NA	NA	-19807	NM_001271455	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.015000	0.487562	
mm_35409.1	chr4	34778252	34778452	-	1	NA	NA	NA	14	NR_138487	66291	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	0.115000	0.686567	-81(GGCTCTTAGAGC,-,0.00),-80(GCTCTTAGAGCC,+,0.00)
mm_22007.1	chr2	167774860	167775060	-	1	NA	NA	NA	83783	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.030000	0.656716	
mm_35374.1	chr4	33031225	33031425	-	1	NA	NA	NA	-2	NR_036602	100504166	Mm.426309	NR_036602	ENSMUSG00000085037	4933421O10Rik	-	RIKEN cDNA 4933421O10 gene	ncRNA	0.185000	0.796020	
mm_50411.1	chr6	48739773	48739973	+	1	NA	NA	NA	826	NM_008376	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.015000	0.447761	
mm_16557.1	chr2	181850849	181851049	+	1	NA	NA	NA	13095	NM_001291211	245867	Mm.491085	NM_153594	ENSMUSG00000027589	Pcmtd2	5330414D10Rik|AI314201	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding	0.005000	0.407960	
mm_168446.1	chr11	40714731	40714931	-	1	NA	NA	NA	18606	NM_013552	15366	Mm.116997	NM_013552	ENSMUSG00000020330	Hmmr	AA386826|CD168|Rhamm	hyaluronan mediated motility receptor (RHAMM)	protein-coding	0.000000	0.457711	
mm_64667.1	chr7	4445124	4445324	-	1	NA	NA	NA	433	NM_175372	108841	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	0.020000	0.542289	
mm_50898.1	chr6	57580905	57581105	+	1	NA	NA	NA	13	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.045000	0.587065	
mm_153996.1	chr19	50678572	50678772	-	1	NA	NA	NA	-26	NM_001290356	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.180000	0.810945	
mm_71075.1	chr8	34156783	34156983	+	1	NA	NA	NA	2320	NM_026432	67887	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	0.000000	0.482587	-7(TTTTTTAGGGGC,+,0.00)
mm_58056.1	chr6	136857500	136857700	-	1	NA	NA	NA	0	NM_026639	109978	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	0.040000	0.537313	
mm_74450.1	chr8	4213643	4213843	-	1	NA	NA	NA	3569	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.025000	0.611940	
mm_123956.1	chr14	74803927	74804127	-	1	NA	NA	NA	71730	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.000000	0.378109	
mm_24120.1	chr3	88170230	88170430	+	1	NA	NA	NA	7455	NR_045997	76642	Mm.424420	NR_045997	ENSMUSG00000096935	1700113A16Rik	2210408E11Rik|AA408983	RIKEN cDNA 1700113A16 gene	ncRNA	0.015000	0.527363	
mm_106713.1	chr12	3826529	3826729	+	1	NA	NA	NA	19469	NM_001271753	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.010000	0.412935	-22(CTCTTTAAACCC,+,0.00)
mm_162447.1	chr1	119906740	119906940	+	1	NA	NA	NA	6328	NM_175106	66343	Mm.49942	NM_175106	ENSMUSG00000036975	Tmem177	2300008B03Rik	transmembrane protein 177	protein-coding	0.015000	0.407960	-38(CTCTAGAAAAGC,-,0.00)
mm_147216.1	chr18	37987072	37987272	-	1	NA	NA	NA	3773	NR_105946	102466913		NR_105946	ENSMUSG00000098297	Mir6980	Gm27969|mmu-mir-6980	microRNA 6980	ncRNA	0.010000	0.407960	
mm_75980.1	chr8	72268356	72268556	-	1	NA	NA	NA	28438	NM_007456	11767	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	0.040000	0.631841	
mm_40164.1	chr5	35757811	35758011	+	1	NA	NA	NA	31	NM_001177698	231148	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0.110000	0.746269	
mm_117745.1	chr13	95891792	95891992	-	1	NA	NA	NA	30	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.155000	0.751244	
mm_16073.1	chr2	168158972	168159172	+	1	NA	NA	NA	-4559	NR_040327	77017	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	0.015000	0.572139	
mm_90204.1	chr10	120388519	120388719	+	1	NA	NA	NA	-904	NR_040626	320626	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	0.025000	0.537313	
mm_90421.1	chr10	127481560	127481760	+	1	NA	NA	NA	-20057	NM_177707	237611	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0.035000	0.582090	
mm_17463.1	chr2	28557910	28558110	-	1	NA	NA	NA	5393	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.040000	0.527363	
mm_27974.1	chr3	80802562	80802762	-	1	NA	NA	NA	129	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.045000	0.572139	
mm_44228.1	chr5	5108345	5108545	-	1	NA	NA	NA	157623	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.005000	0.432836	
mm_16820.1	chr2	11473675	11473875	-	1	NA	NA	NA	28315	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.000000	0.477612	
mm_25738.1	chr3	122896653	122896853	+	1	NA	NA	NA	1681	NM_007980	14079	Mm.28398	NM_007980	ENSMUSG00000023057	Fabp2	Fabpi|I-FABP	fatty acid binding protein 2, intestinal	protein-coding	0.010000	0.422886	
mm_83688.1	chr9	50555077	50555277	-	1	NA	NA	NA	-39	NM_133217	170752	Mm.390149	NM_133217	ENSMUSG00000032066	Bco2	B-diox-II|Bcdo2|Bcmo2|CMO2	beta-carotene oxygenase 2	protein-coding	0.010000	0.452736	
mm_130346.1	chr15	97748412	97748612	-	1	NA	NA	NA	-17107	NM_001168693	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.025000	0.572139	
mm_121587.1	chr14	7791673	7791873	-	1	NA	NA	NA	-26184	NM_001081427	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.060000	0.651741	
mm_31419.1	chr4	48051270	48051470	+	1	NA	NA	NA	124	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.045000	0.582090	
mm_61427.1	chr7	73687071	73687271	+	1	NA	NA	NA	-608	NR_033604	244061	Mm.484605	NR_033604	ENSMUSG00000108337	Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo	0.010000	0.477612	
mm_101325.1	chr11	22860499	22860699	-	1	NA	NA	NA	-263	NM_001169114	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.070000	0.661692	
mm_154260.1	chr19	60769833	60770033	-	1	NA	NA	NA	4452	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.025000	0.422886	
mm_69962.1	chr7	142376488	142376688	-	1	NA	NA	NA	-2842	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.020000	0.557214	
mm_65638.1	chr7	27912527	27912727	-	1	NA	NA	NA	16803	NM_028538	73430	Mm.379224	NM_028538	ENSMUSG00000070709	Zfp974	1700049G17Rik|AV321011|BB026409	zinc finger protein 974	protein-coding	0.000000	0.303483	
mm_131623.1	chr16	20097476	20097676	+	1	NA	NA	NA	22	NM_029436	75785	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	0.090000	0.656716	
mm_103351.1	chr11	74830574	74830774	-	1	NA	NA	NA	-250	NM_010813	17428	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.050000	0.582090	
mm_126596.1	chr15	82358464	82358664	+	1	NA	NA	NA	-4273	NM_025987	67130	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	0.010000	0.537313	
mm_138563.1	chr17	35343055	35343255	+	1	NA	NA	NA	822	NM_010392	15013	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|ENSMUSG00000079507|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	0.065000	0.646766	
mm_165839.1	chr3	158949628	158949828	+	1	NA	NA	NA	-126636	NR_040750	624759	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA	0.005000	0.482587	
mm_81443.1	chr9	109812113	109812313	+	1	NA	NA	NA	-4414	NM_183136	78709	Mm.99613	NM_183136	ENSMUSG00000050074	Spink8	C630041L24Rik	serine peptidase inhibitor, Kazal type 8	protein-coding	0.005000	0.502488	
mm_40166.1	chr5	35786065	35786265	+	1	NA	NA	NA	28285	NM_001177698	231148	Mm.254446	NM_177678	ENSMUSG00000029095	Ablim2	AI606905|C230091L11	actin-binding LIM protein 2	protein-coding	0.020000	0.651741	
mm_41576.1	chr5	93172843	93173043	+	1	NA	NA	NA	33552	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.025000	0.497512	
mm_85276.1	chr9	99437460	99437660	-	1	NA	NA	NA	-848	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.035000	0.487562	54(CCATTTATATAG,+,0.00)
mm_90523.1	chr10	128061242	128061442	+	1	NA	NA	NA	2360	NM_019766	56351	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3 (cytosolic)	protein-coding	0.015000	0.502488	
mm_148598.1	chr19	5111227	5111427	+	1	NA	NA	NA	-4331	NM_029576	76308	Mm.182563	NM_029576	ENSMUSG00000024870	Rab1b	1110011F09Rik	RAB1B, member RAS oncogene family	protein-coding	0.015000	0.577114	
mm_26306.1	chr3	142511976	142512176	+	1	NA	NA	NA	15142	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.010000	0.457711	-62(CCTTTTAAAATC,+,0.00)
mm_143584.1	chr17	74338508	74338708	-	1	NA	NA	NA	-379	NM_001162870	50850	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	0.095000	0.616915	
mm_28732.1	chr3	95736001	95736201	-	1	NA	NA	NA	-1128	NR_105981	102466787		NR_105981	ENSMUSG00000098737	Mir7014	Gm27837|mmu-mir-7014	microRNA 7014	ncRNA	0.045000	0.611940	
mm_140620.1	chr17	11861091	11861291	-	1	NA	NA	NA	21998	NR_045808	52027	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	0.020000	0.442786	
mm_145488.1	chr18	60385604	60385804	+	1	NA	NA	NA	9675	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.000000	0.323383	
mm_91925.1	chr10	60350323	60350523	-	1	NA	NA	NA	3572	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.005000	0.611940	
mm_10143.1	chr2	4285145	4285345	+	1	NA	NA	NA	-115731	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.015000	0.477612	
mm_129747.1	chr15	82332360	82332560	-	1	NA	NA	NA	6366	NM_008669	17939	Mm.20325	NM_008669	ENSMUSG00000022453	Naga	-	N-acetyl galactosaminidase, alpha	protein-coding	0.030000	0.552239	
mm_78219.1	chr9	21545025	21545225	+	1	NA	NA	NA	-1769	NM_021531	59035	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0.020000	0.447761	
mm_88223.1	chr10	70365700	70365900	+	1	NA	NA	NA	-74868	NM_001143777	71721	Mm.477813	NM_024244	ENSMUSG00000043259	Fam13c	1200015N20Rik|C030038O19Rik|mKIAA1796	family with sequence similarity 13, member C	protein-coding	0.025000	0.507463	
mm_83393.1	chr9	44672159	44672359	-	1	NA	NA	NA	-974	NM_001277851	58866	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0.015000	0.477612	-34(CTGTATAAAAAC,-,0.00)
mm_10862.1	chr2	25080203	25080403	+	1	NA	NA	NA	-20	NM_028093	72090	Mm.33403	NM_028093	ENSMUSG00000036813	Entpd8	-	ectonucleoside triphosphate diphosphohydrolase 8	protein-coding	0.015000	0.522388	
mm_108203.1	chr12	76902094	76902294	+	1	NA	NA	NA	60054	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.010000	0.472637	-32(GAGTTTATAGGG,-,0.00),-30(GTTTATAGGGGC,+,0.00)
mm_84068.1	chr9	58201397	58201597	-	1	NA	NA	NA	218	NM_001161535	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.060000	0.527363	
mm_70784.1	chr8	22476657	22476857	+	1	NA	NA	NA	57	NM_011394	20516	Mm.323901	NM_011394	ENSMUSG00000037656	Slc20a2	MolPit2|Pit-2|Pit2|Ram-1|Ram1	solute carrier family 20, member 2	protein-coding	0.190000	0.840796	
mm_161540.1	chr15	102998456	102998656	+	1	NA	NA	NA	8017	NM_010466	15426	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.020000	0.472637	30(GGCTTTTTAAAA,-,0.00)
mm_35058.1	chr4	6357429	6357629	-	1	NA	NA	NA	-8151	NM_016807	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.015000	0.442786	
mm_20467.1	chr2	129369642	129369842	-	1	NA	NA	NA	-160	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.005000	0.442786	
mm_75211.1	chr8	39605301	39605501	-	1	NA	NA	NA	37277	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.303483	-5(AACTTTATAAGA,-,0.00)
mm_123039.1	chr14	55580045	55580245	-	1	NA	NA	NA	1651	NM_011189	19186	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0.030000	0.567164	
mm_112707.1	chr13	18781326	18781526	+	1	NA	NA	NA	64134	NM_172120	218035	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0.000000	0.452736	
mm_47305.1	chr5	122391652	122391852	-	1	NA	NA	NA	-126	NM_019824	56378	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.065000	0.497512	
mm_158998.1	chr1	143740241	143740441	+	1	NA	NA	NA	-106	NM_001038594	69367	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	0.025000	0.447761	65(GCATTTATGCGG,+,0.00)
mm_46183.1	chr5	97392242	97392442	-	1	NA	NA	NA	-12	NM_001033191	97243	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	0.080000	0.656716	
mm_128160.1	chr15	33550637	33550837	-	1	NA	NA	NA	102699	NR_045070	75880	Mm.396109	NR_045070		4930592A05Rik	-	RIKEN cDNA 4930592A05 gene	ncRNA	0.000000	0.447761	
mm_86330.1	chr9	123061762	123061962	-	1	NA	NA	NA	27121	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.025000	0.522388	
mm_4256.1	chr1	171411263	171411463	+	1	NA	NA	NA	50	NM_001305676	22278	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	0.095000	0.686567	
mm_136159.1	chr16	88290113	88290313	-	1	NA	NA	NA	45	NM_146072	14805	Mm.5134	NM_010348	ENSMUSG00000022935	Grik1	A830007B11Rik|D16Ium24|D16Ium24e|GluK1|GluK5|Glur-5|Glur5|Glurbeta1	glutamate receptor, ionotropic, kainate 1	protein-coding	0.015000	0.547264	
mm_132678.1	chr16	42921765	42921965	+	1	NA	NA	NA	-9795	NR_040402	100503040	Mm.490721	NR_040402		Gm19522	-	predicted gene, 19522	ncRNA	0.015000	0.393035	
mm_124514.1	chr14	121954660	121954860	-	1	NA	NA	NA	10433	NM_183031	321019	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.045000	0.507463	
mm_69981.1	chr7	142380713	142380913	-	1	NA	NA	NA	7057	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.020000	0.512438	
mm_64232.1	chr7	141694509	141694709	+	1	NA	NA	NA	4269	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.005000	0.572139	
mm_156149.1	chrX	129885300	129885500	+	1	NA	NA	NA	135658	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.000000	0.313433	
mm_90969.1	chr10	13443588	13443788	-	1	NA	NA	NA	30708	NM_001195065	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.005000	0.472637	
mm_156463.1	chrX	143482943	143483143	+	1	NA	NA	NA	-35548	NM_001195048	18481	Mm.40035	NM_008778	ENSMUSG00000031284	Pak3	PAK-3|Pak65alpha|Pak65beta|Stk4	p21 protein (Cdc42/Rac)-activated kinase 3	protein-coding	0.010000	0.313433	
mm_43960.1	chr5	145243993	145244193	+	1	NA	NA	NA	12334	NM_028298	72611	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	0.005000	0.422886	
mm_89367.1	chr10	88730965	88731165	+	1	NA	NA	NA	36	NM_001037166	237433	Mm.478763	NM_001037166		Gm4925	EG237433	predicted gene 4925	protein-coding	0.070000	0.527363	-30(GCATTTAGAGGA,+,0.00)
mm_70573.1	chr8	13165751	13165951	+	1	NA	NA	NA	6690	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.015000	0.492537	
mm_110467.1	chr12	51829408	51829608	-	1	NA	NA	NA	28	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.155000	0.796020	
mm_143462.1	chr17	70997837	70998037	-	1	NA	NA	NA	4596	NM_026064	67268	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0.010000	0.432836	-89(GCTTTAAAACTG,+,0.00)
mm_7743.1	chr1	131037884	131038084	-	1	NA	NA	NA	18139	NM_010548	16153	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.005000	0.328358	83(GCTTTTCTAGAG,+,0.00)
mm_18197.1	chr2	45117306	45117506	-	1	NA	NA	NA	-4127	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.035000	0.557214	-93(CCCTTAATGCCC,+,0.00)
mm_104821.1	chr11	99001296	99001496	-	1	NA	NA	NA	-18380	NM_178596	353155	Mm.453253	NM_178596	ENSMUSG00000047197	Gjd3	Gja11|Gjc1|cx30.2	gap junction protein, delta 3	protein-coding	0.015000	0.388060	
mm_73886.1	chr8	119345527	119345727	+	1	NA	NA	NA	1089	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.035000	0.562189	
mm_27788.1	chr3	75268237	75268437	-	1	NA	NA	NA	1741	NM_026460	67931	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.000000	0.368159	
mm_159484.1	chr4	41730343	41730543	-	1	NA	NA	NA	699	NM_001017362	550619	Mm.425179	NM_001017362	ENSMUSG00000066224	Arid3c	OTTMUSG00000006683	AT rich interactive domain 3C (BRIGHT-like)	protein-coding	0.000000	0.437811	
mm_130319.1	chr15	97373789	97373989	-	1	NA	NA	NA	-126602	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.035000	0.457711	
mm_70502.1	chr8	12867014	12867214	+	1	NA	NA	NA	-35195	NR_045775	100504249	Mm.441494	NR_045775	ENSMUSG00000084780	Gm15350	OTTMUSG00000020611	predicted gene 15350	ncRNA	0.015000	0.477612	81(CCTTTAAAATTG,+,0.00)
mm_26861.1	chr3	14993868	14994068	-	1	NA	NA	NA	22767	NR_040550	77127	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0.020000	0.502488	-33(CCATATAAAAAC,-,0.00)
mm_31196.1	chr4	43663839	43664039	+	1	NA	NA	NA	4920	NM_175517	242408	Mm.440423	NM_175517	ENSMUSG00000043633	Fam221b	4930412F15Rik	family with sequence similarity 221, member B	protein-coding	0.065000	0.507463	
mm_19196.1	chr2	84442688	84442888	-	1	NA	NA	NA	-17522	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.010000	0.487562	
mm_62022.1	chr7	91562983	91563183	+	1	NA	NA	NA	472297	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.323383	
mm_121441.1	chr14	120430022	120430222	+	1	NA	NA	NA	-48339	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.000000	0.243781	76(TACTATATATGG,-,0.00)
mm_10046.1	chr1	193173282	193173482	-	1	NA	NA	NA	-87	NM_001160360	319266	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	0.050000	0.527363	
mm_52127.1	chr6	97943205	97943405	+	1	NA	NA	NA	13488	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.020000	0.422886	
mm_135550.1	chr16	49839937	49840137	-	1	NA	NA	NA	-15617	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.025000	0.522388	
mm_95426.1	chr11	50174762	50174962	+	1	NA	NA	NA	11	NM_026543	68067	Mm.40828	NM_026543	ENSMUSG00000020381	Mrnip	2900016G09Rik|3010026O09Rik|AI851514|AW475975	MRN complex interacting protein	protein-coding	0.075000	0.671642	
mm_156296.1	chrX	136837485	136837685	+	1	NA	NA	NA	14839	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.398010	
mm_109395.1	chr12	109853963	109854163	+	1	NA	NA	NA	106185	NR_037233	100499517		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	0.000000	0.308458	
mm_76556.1	chr8	88361946	88362146	-	1	NA	NA	NA	145	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.170000	0.781095	
mm_110672.1	chr12	65159104	65159304	-	1	NA	NA	NA	13376	NM_172578	217653	Mm.21144	NM_172578	ENSMUSG00000047534	Mis18bp1	6720403H11|C79407|Knl2|mKIAA1903	MIS18 binding protein 1	protein-coding	0.000000	0.303483	
mm_4953.1	chr1	191225354	191225554	+	1	NA	NA	NA	-42121	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.010000	0.462687	
mm_37297.1	chr4	119189911	119190111	-	1	NA	NA	NA	0	NM_013848	27028	Mm.290753	NM_013848	ENSMUSG00000028644	Ermap	AA409279|AI666418	erythroblast membrane-associated protein	protein-coding	0.020000	0.512438	-16(GTTTATAGGGAC,+,0.00)
mm_84410.1	chr9	65556777	65556977	-	1	NA	NA	NA	23210	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.010000	0.601990	
mm_141907.1	chr17	34959135	34959335	-	1	NA	NA	NA	3	NM_010478	15511	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	0.080000	0.641791	-34(CTCCTTAAAGGC,-,0.00),-32(CCTTAAAGGCGC,+,0.00)
mm_81732.1	chr9	113756247	113756447	+	1	NA	NA	NA	14874	NM_001114347	76499	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.015000	0.462687	
mm_111849.1	chr12	107938853	107939053	-	1	NA	NA	NA	64461	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.035000	0.522388	
mm_2179.1	chr1	88472307	88472507	+	1	NA	NA	NA	37659	NM_008132	14659	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding	0.015000	0.502488	
mm_131389.1	chr16	14209566	14209766	+	1	NA	NA	NA	46391	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.020000	0.601990	
mm_1524.1	chr1	72826525	72826725	+	1	NA	NA	NA	1238	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.015000	0.532338	
mm_83897.1	chr9	56136389	56136589	-	1	NA	NA	NA	24581	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.005000	0.462687	
mm_78643.1	chr9	40269362	40269562	+	1	NA	NA	NA	246	NM_178227	235281	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.055000	0.626866	
mm_68249.1	chr7	105565480	105565680	-	1	NA	NA	NA	3197	NM_001310600	11785	Mm.38469	NM_009685	ENSMUSG00000037032	Apbb1	Fe65|Rir	amyloid beta (A4) precursor protein-binding, family B, member 1	protein-coding	0.030000	0.572139	
mm_89144.1	chr10	85927304	85927504	+	1	NA	NA	NA	-1087	NM_001163614	67341	Mm.382315	NM_001163614	ENSMUSG00000085111	Ascl4	1700054F16Rik|bHLHa44	achaete-scute family bHLH transcription factor 4	protein-coding	0.015000	0.497512	
mm_3665.1	chr1	153486809	153487009	+	1	NA	NA	NA	751	NM_007842	13211	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.050000	0.567164	
mm_6567.1	chr1	75180278	75180478	-	1	NA	NA	NA	14	NM_023732	74104	Mm.28663	NM_023732	ENSMUSG00000026198	Abcb6	1200005B17Rik	ATP-binding cassette, sub-family B (MDR/TAP), member 6	protein-coding	0.085000	0.606965	
mm_81860.1	chr9	118835399	118835599	+	1	NA	NA	NA	-91037	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.000000	0.467662	46(CCTCTTATAGCT,+,0.00)
mm_11082.1	chr2	27714394	27714594	+	1	NA	NA	NA	3911	NM_001290482	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.005000	0.552239	
mm_36482.1	chr4	82885007	82885207	-	1	NA	NA	NA	44	NM_009887	12622	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	0.015000	0.547264	-31(TCTTTTAGGCCC,+,0.00)
mm_158855.1	chrX	169997017	169997217	-	1	NA	NA	NA	-18200	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.135000	0.721393	
mm_129904.1	chr15	83935993	83936193	-	1	NA	NA	NA	2	NM_001161628	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	0.015000	0.582090	
mm_34092.1	chr4	138833171	138833371	+	1	NA	NA	NA	1395	NM_001082531	18780	Mm.4675	NM_011108	ENSMUSG00000058908	Pla2g2a	EF|Mom1|Pla2|sPLA2|sPla2-IIA	phospholipase A2, group IIA (platelets, synovial fluid)	protein-coding	0.005000	0.482587	-30(GCCTCTATAAGA,-,0.00)
mm_119216.1	chr14	33213955	33214155	+	1	NA	NA	NA	-2768	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.045000	0.601990	
mm_33332.1	chr4	129136790	129136990	+	1	NA	NA	NA	-109	NM_027402	384061	Mm.44075	NM_027402	ENSMUSG00000001334	Fndc5	1500001L03Rik|AI836596|C87088|PeP|Pxp	fibronectin type III domain containing 5	protein-coding	0.160000	0.810945	
mm_116591.1	chr13	48513323	48513523	-	1	NA	NA	NA	-13	NM_001164575	67911	Mm.251375	NM_026450	ENSMUSG00000050954	Zfp169	1700025J14Rik|4930429A13Rik|BE688704	zinc finger protein 169	protein-coding	0.090000	0.611940	
mm_11461.1	chr2	32236512	32236712	+	1	NA	NA	NA	-71	NM_145145	99011	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0.135000	0.671642	
mm_131526.1	chr16	17640799	17640999	+	1	NA	NA	NA	-5571	NM_001166164	72315	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.025000	0.572139	
mm_122113.1	chr14	31000870	31001070	-	1	NA	NA	NA	-423	NM_001165930	76485	Mm.8766	NM_029626	ENSMUSG00000021916	Glt8d1	2410004H05Rik|5430414N14Rik|AI450005	glycosyltransferase 8 domain containing 1	protein-coding	0.030000	0.492537	
mm_107689.1	chr12	55303163	55303363	+	1	NA	NA	NA	-263	NM_021529	59032	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	0.055000	0.492537	
mm_165724.1	chr3	103020360	103020560	-	1	NA	NA	NA	-86	NM_001310693	229663	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0.090000	0.616915	
mm_75731.1	chr8	69395423	69395623	-	1	NA	NA	NA	21	NR_038044	378466	Mm.37846	NM_194351	ENSMUSG00000110444	Gm10033	9330175B10Rik|ENSMUSG00000057924|Gm10311	predicted gene 10033	ncRNA	0.060000	0.606965	
mm_86294.1	chr9	122187520	122187720	-	1	NA	NA	NA	70354	NM_133741	20623	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0.005000	0.427861	
mm_43654.1	chr5	138441401	138441601	+	1	NA	NA	NA	25	NM_028130	72154	Mm.20263	NM_028130	ENSMUSG00000036898	Zfp157	2610020C11Rik|A630094N24Rik|AI327407|mszf12|mszf23-1	zinc finger protein 157	protein-coding	0.065000	0.587065	
mm_49911.1	chr6	39024206	39024406	+	1	NA	NA	NA	43280	NR_040523	69986	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.010000	0.422886	
mm_151099.1	chr19	47854935	47855135	+	1	NA	NA	NA	62	NM_010362	14873	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0.090000	0.671642	-96(TCCCTTTAAAGG,-,0.00),-95(CCCTTTAAAGGC,+,0.00),-95(CCCTTTAAAGGC,-,0.00),-94(CCTTTAAAGGCG,+,0.00)
mm_7230.1	chr1	93425276	93425476	-	1	NA	NA	NA	20325	NM_001301364	110611	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0.015000	0.472637	-67(CCTTTTATGTTC,+,0.00)
mm_165891.1	chr4	44328811	44329011	+	1	NA	NA	NA	27994	NM_010790	17279	Mm.268668	NM_010790	ENSMUSG00000035683	Melk	AI327312|MPK38|mKIAA0175	maternal embryonic leucine zipper kinase	protein-coding	0.005000	0.497512	
mm_53915.1	chr6	4030798	4030998	-	1	NA	NA	NA	16686	NR_131108	78034	Mm.243851	NR_131108	ENSMUSG00000107681	4930528H21Rik	-	RIKEN cDNA 4930528H21 gene	ncRNA	0.015000	0.452736	
mm_743.1	chr1	43522205	43522405	+	1	NA	NA	NA	76554	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.020000	0.462687	-32(CCTTATCAAGAG,+,0.00)
mm_40153.1	chr5	35395559	35395759	+	1	NA	NA	NA	6542	NM_010445	15371	Mm.358606	NM_010445	ENSMUSG00000067438	Hmx1	Nkx5-3	H6 homeobox 1	protein-coding	0.005000	0.582090	
mm_172730.1	chr8	77907024	77907224	+	1	NA	NA	NA	-182672	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	0.050000	0.522388	
mm_25785.1	chr3	126780276	126780476	+	1	NA	NA	NA	163010	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.010000	0.522388	
mm_162426.1	chr1	92774903	92775103	-	1	NA	NA	NA	-56683	NM_016696	14733	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.045000	0.562189	
mm_137665.1	chr17	28692535	28692735	+	1	NA	NA	NA	67	NM_001168513	26416	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.040000	0.502488	
mm_1613.1	chr1	74391387	74391587	+	1	NA	NA	NA	-122	NM_153088	227292	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.120000	0.761194	
mm_116529.1	chr13	45827925	45828125	-	1	NA	NA	NA	136966	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.005000	0.373134	
mm_49100.1	chr6	7846880	7847080	+	1	NA	NA	NA	1756	NM_052993	94192	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.005000	0.402985	
mm_126474.1	chr15	81466588	81466788	+	1	NA	NA	NA	372	NM_019712	56438	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.040000	0.616915	
mm_48756.1	chr5	148329860	148330060	-	1	NA	NA	NA	62855	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.005000	0.452736	
mm_146643.1	chr18	10785380	10785580	-	1	NA	NA	NA	34	NR_035413	100316783		NR_035413	ENSMUSG00000080662	Mir1b	Mir1-2-as|Mir1-2as|Mirn1-2as|mir-1b|mmu-mir-1-2-as|mmu-mir-1b	microRNA 1b	ncRNA	0.020000	0.432836	
mm_156632.1	chrX	155622698	155622898	+	1	NA	NA	NA	529	NM_001093750	211612	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	0.075000	0.696517	
mm_168354.1	chr1	113904171	113904371	-	1	NA	NA	NA	-1780866	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.025000	0.427861	
mm_170003.1	chr1	71652827	71653027	-	1	NA	NA	NA	307	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.055000	0.661692	
mm_47824.1	chr5	134256830	134257030	-	1	NA	NA	NA	-27305	NR_104383	17969	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.010000	0.472637	
mm_149996.1	chr19	29266572	29266772	+	1	NA	NA	NA	14869	NM_008413	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.015000	0.393035	
mm_96756.1	chr11	69911239	69911439	+	1	NA	NA	NA	-2853	NM_019726	56310	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953	G protein pathway suppressor 2	protein-coding	0.020000	0.606965	-79(GCCCTTTAAAGA,-,0.00),-78(CCCTTTAAAGAG,+,0.00),-78(CCCTTTAAAGAG,-,0.00),-77(CCTTTAAAGAGC,+,0.00)
mm_150985.1	chr19	46515748	46515948	+	1	NA	NA	NA	14200	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.010000	0.447761	
mm_32392.1	chr4	106622399	106622599	+	1	NA	NA	NA	50	NM_177667	230576	Mm.41945	NM_177667	ENSMUSG00000034919	Ttc22	4732467L16Rik	tetratricopeptide repeat domain 22	protein-coding	0.070000	0.696517	
mm_90911.1	chr10	11869177	11869377	-	1	NA	NA	NA	260053	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.025000	0.437811	
mm_57472.1	chr6	125232828	125233028	-	1	NA	NA	NA	-1068	NM_145391	213233	Mm.296902	NM_145391	ENSMUSG00000038213	Tapbpl	BC017613|TAPBPL-R|Tapbplr	TAP binding protein-like	protein-coding	0.020000	0.467662	
mm_139894.1	chr17	70851919	70852119	+	1	NA	NA	NA	-285	NM_001164075	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.050000	0.527363	-35(GCCTTTTTAAAA,-,0.00),-33(CTTTTTAAAAAG,+,0.00),-33(CTTTTTAAAAAG,-,0.00)
mm_79222.1	chr9	49518239	49518439	+	1	NA	NA	NA	51	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.010000	0.502488	
mm_112609.1	chr13	14613158	14613358	+	1	NA	NA	NA	16	NM_008944	19166	Mm.252255	NM_008944	ENSMUSG00000015671	Psma2	Lmpc3	proteasome (prosome, macropain) subunit, alpha type 2	protein-coding	0.055000	0.512438	
mm_145644.1	chr18	61121874	61122074	+	1	NA	NA	NA	4506	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.010000	0.437811	
mm_148251.1	chr18	80713481	80713681	-	1	NA	NA	NA	-510	NM_001164109	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.085000	0.597015	-26(TCATTAAAAGGG,+,0.00)
mm_31033.1	chr4	40948399	40948599	+	1	NA	NA	NA	-54	NM_029814	76959	Mm.212763	NM_029814	ENSMUSG00000028419	Chmp5	2210412K09Rik|AW545668	charged multivesicular body protein 5	protein-coding	0.070000	0.592040	
mm_171771.1	chr5	108762913	108763113	+	1	NA	NA	NA	-829	NR_040691	73295	Mm.416858	NR_040691	ENSMUSG00000101762	1700047L14Rik	-	RIKEN cDNA 1700047L14 gene	ncRNA	0.015000	0.442786	49(GTCTCTTAGAGG,-,0.00)
mm_133850.1	chr16	96213915	96214115	+	1	NA	NA	NA	13545	NM_015825	50795	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0.005000	0.398010	
mm_141859.1	chr17	34803971	34804171	-	1	NA	NA	NA	355	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.010000	0.532338	
mm_76515.1	chr8	87470004	87470204	-	1	NA	NA	NA	2488	NM_019626	12404	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0.090000	0.547264	
mm_76385.1	chr8	84842496	84842696	-	1	NA	NA	NA	-1931	NM_009010	19358	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.005000	0.522388	
mm_116774.1	chr13	52979741	52979941	-	1	NA	NA	NA	1198	NM_017373	18030	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0.025000	0.363184	
mm_162416.1	chr1	87901176	87901376	+	1	NA	NA	NA	-46977	NR_136921	100503175	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.010000	0.522388	-91(CCTTTTCTGGTC,+,0.00)
mm_140439.1	chr17	88530028	88530228	+	1	NA	NA	NA	4	NM_028658	73825	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0.105000	0.766169	
mm_80974.1	chr9	103143276	103143476	+	1	NA	NA	NA	31302	NM_173781	270192	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.015000	0.437811	-32(CCCTTTAGAGCA,+,0.00)
mm_108161.1	chr12	76367234	76367434	+	1	NA	NA	NA	2130	NM_001172104	109929	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0.020000	0.457711	
mm_152051.1	chr19	6235732	6235932	-	1	NA	NA	NA	8	NM_198168	225849	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0.095000	0.716418	
mm_36532.1	chr4	86611936	86612136	-	1	NA	NA	NA	-14	NM_173400	230376	Mm.74730	NM_173400	ENSMUSG00000038047	Haus6	6230416J20Rik|9830144E06|D4Ertd27e|mKIAA1574	HAUS augmin-like complex, subunit 6	protein-coding	0.075000	0.606965	
mm_62180.1	chr7	97451224	97451424	+	1	NA	NA	NA	-10	NM_001136235	233529	Mm.334033	NM_001010826	ENSMUSG00000051727	Kctd14	AI449310|D7Ertd760e	potassium channel tetramerisation domain containing 14	protein-coding	0.000000	0.432836	
mm_83506.1	chr9	45984279	45984479	-	1	NA	NA	NA	492	NM_008775	18475	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0.050000	0.537313	
mm_102749.1	chr11	67255621	67255821	-	1	NA	NA	NA	17909	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.020000	0.492537	
mm_35803.1	chr4	46602109	46602309	-	1	NA	NA	NA	-280	NM_001164804	107684	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.090000	0.666667	
mm_12622.1	chr2	74697849	74698049	+	1	NA	NA	NA	186	NM_013555	15438	Mm.26544	NM_013555	ENSMUSG00000043342	Hoxd9	Hox-4.4|Hox-5.2	homeobox D9	protein-coding	0.095000	0.587065	
mm_17793.1	chr2	33130136	33130336	-	1	NA	NA	NA	-43032	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.090000	0.701493	
mm_29326.1	chr3	108044742	108044942	-	1	NA	NA	NA	14	NM_026764	14865	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	0.070000	0.631841	
mm_50291.1	chr6	47454592	47454792	+	1	NA	NA	NA	368	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.140000	0.776119	
mm_56592.1	chr6	108472443	108472643	-	1	NA	NA	NA	-17200	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.005000	0.472637	-90(ACCTTTAAGAGG,-,0.00),-89(CCTTTAAGAGGT,+,0.00),-38(TTCCCTAAAGGG,-,0.00)
mm_11561.1	chr2	32775746	32775946	+	1	NA	NA	NA	25	NM_178595	329384	Mm.268037	NM_178595	ENSMUSG00000053746	Ptrh1	2210013M04Rik|AW046744	peptidyl-tRNA hydrolase 1 homolog	protein-coding	0.080000	0.661692	
mm_104357.1	chr11	94303780	94303980	-	1	NA	NA	NA	18031	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.030000	0.422886	
mm_78140.1	chr9	20897801	20898001	+	1	NA	NA	NA	689	NM_016876	53356	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0.010000	0.517413	
mm_12301.1	chr2	69104967	69105167	+	1	NA	NA	NA	-30733	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.010000	0.427861	
mm_56261.1	chr6	90810091	90810291	-	1	NA	NA	NA	-68	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.060000	0.651741	
mm_107985.1	chr12	73086368	73086568	+	1	NA	NA	NA	26777	NM_011382	20474	Mm.249575	NM_011382	ENSMUSG00000034460	Six4	AI047561|AREC3|TrexBF	sine oculis-related homeobox 4	protein-coding	0.015000	0.492537	
mm_158101.1	chrX	101794281	101794481	-	1	NA	NA	NA	-55004	NM_001163610	100042480	Mm.232	NM_001163610	ENSMUSG00000079481	Nhsl2	1110062M06Rik|6430511F03|AI225852|AW488865|EG621083|ENSMUSG00000073037|Gm10456	NHS-like 2	protein-coding	0.105000	0.681592	
mm_105208.1	chr11	102146150	102146350	-	1	NA	NA	NA	737	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	0.035000	0.606965	-81(CCTTATCTAGCA,+,0.00)
mm_18863.1	chr2	75704918	75705118	-	1	NA	NA	NA	-355	NM_010902	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.060000	0.636816	
mm_27616.1	chr3	59262738	59262938	-	1	NA	NA	NA	-7	NM_027571	70839	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	0.025000	0.452736	
mm_119652.1	chr14	52016764	52016964	+	1	NA	NA	NA	-1	NM_001033805	619301	Mm.475177	NM_001033805	ENSMUSG00000072571	Tmem253	G630016D24Rik	transmembrane protein 253	protein-coding	0.010000	0.547264	
mm_60401.1	chr7	44475654	44475854	+	1	NA	NA	NA	5407	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.542289	
mm_6066.1	chr1	60786351	60786551	-	1	NA	NA	NA	40063	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.025000	0.477612	
mm_11384.1	chr2	31284051	31284251	+	1	NA	NA	NA	38228	NM_019681	14299	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.025000	0.562189	
mm_16235.1	chr2	173156208	173156408	+	1	NA	NA	NA	3235	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.025000	0.527363	
mm_33679.1	chr4	133251316	133251516	+	1	NA	NA	NA	10598	NM_016693	53608	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	0.110000	0.701493	
mm_5468.1	chr1	36556576	36556776	-	1	NA	NA	NA	881	NM_001304330	20353	Mm.29558	NM_001126047	ENSMUSG00000026121	Sema4c	AI426163|M-Sema F|Semacl1|Semaf|Semai|sema I	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	protein-coding	0.040000	0.646766	
mm_171331.1	chr3	98580426	98580626	-	1	NA	NA	NA	-16488	NM_008294	15495	Mm.14309	NM_008294	ENSMUSG00000095143	Hsd3b4	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	protein-coding	0.045000	0.522388	
mm_136591.1	chr17	4995886	4996086	+	1	NA	NA	NA	912	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.105000	0.751244	
mm_112771.1	chr13	19395904	19396104	+	1	NA	NA	NA	-191	NM_001347485	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.030000	0.527363	
mm_92157.1	chr10	67537291	67537491	-	1	NA	NA	NA	-478	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.050000	0.477612	
mm_167764.1	chr9	110529128	110529328	+	1	NA	NA	NA	-3369	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.025000	0.532338	
mm_151357.1	chr19	55908411	55908611	+	1	NA	NA	NA	13190	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.040000	0.577114	
mm_129412.1	chr15	78314424	78314624	-	1	NA	NA	NA	-8803	NM_001287389	12984	Mm.1940	NM_007781	ENSMUSG00000071714	Csf2rb2	AIC2A|BetaIl3|Bil3|Csfgmrb|Il3r|Il3rb|Il3rb2	colony stimulating factor 2 receptor, beta 2, low-affinity (granulocyte-macrophage)	protein-coding	0.005000	0.407960	-6(TGTTATTAAAGG,-,0.00)
mm_7113.1	chr1	89968588	89968788	-	1	NA	NA	NA	-37512	NM_010262	14472	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.115000	0.721393	
mm_28221.1	chr3	88440903	88441103	-	1	NA	NA	NA	-52	NR_105978	102465611		NR_105978	ENSMUSG00000098655	Mir7011	Gm27677|mmu-mir-7011	microRNA 7011	ncRNA	0.040000	0.611940	
mm_107485.1	chr12	38730012	38730212	+	1	NA	NA	NA	-49970	NM_001347379	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.020000	0.497512	-32(CTTTAAATACCC,+,0.00)
mm_47273.1	chr5	121916639	121916839	-	1	NA	NA	NA	67711	NM_175474	231717	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.030000	0.572139	
mm_112423.1	chr13	4191082	4191282	+	1	NA	NA	NA	-5	NM_013778	27384	Mm.27447	NM_013778	ENSMUSG00000021213	Akr1c13	mKIAA4014	aldo-keto reductase family 1, member C13	protein-coding	0.010000	0.482587	
mm_44488.1	chr5	23669066	23669266	-	1	NA	NA	NA	43501	NR_038090	433855	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	0.005000	0.407960	
mm_18295.1	chr2	52730589	52730789	-	1	NA	NA	NA	11460	NM_019667	56324	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0.000000	0.412935	
mm_57776.1	chr6	129237946	129238146	-	1	NA	NA	NA	-1	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.020000	0.542289	
mm_39870.1	chr5	31074728	31074928	+	1	NA	NA	NA	18699	NM_011773	22784	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.010000	0.522388	
mm_28547.1	chr3	93015587	93015787	-	1	NA	NA	NA	-1	NM_028798	74175	Mm.35806	NM_028798	ENSMUSG00000027913	Crct1	2300002G24Rik|AA589624|Nice-1	cysteine-rich C-terminal 1	protein-coding	0.005000	0.492537	-32(TCTTATAAAAGC,+,0.00),-32(TCTTATAAAAGC,-,0.00)
mm_46816.1	chr5	113138326	113138526	-	1	NA	NA	NA	159	NM_001347397	243219	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.065000	0.666667	
mm_165207.1	chr2	34957076	34957276	+	1	NA	NA	NA	4596	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.015000	0.537313	
mm_60930.1	chr7	46850124	46850324	+	1	NA	NA	NA	3142	NM_001136069	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.035000	0.512438	
mm_136929.1	chr17	13874448	13874648	+	1	NA	NA	NA	-73825	NM_001122977	635895	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.000000	0.497512	
mm_86045.1	chr9	114496515	114496715	-	1	NA	NA	NA	-71	NM_009916	12773	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	0.005000	0.452736	
mm_43405.1	chr5	135862948	135863148	+	1	NA	NA	NA	-24871	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.000000	0.497512	
mm_151667.1	chr19	4175377	4175577	-	1	NA	NA	NA	2	NM_134148	107239	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	0.025000	0.616915	-33(CACTATATAAGA,-,0.00)
mm_48953.1	chr6	4540551	4540751	+	1	NA	NA	NA	35033	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.025000	0.398010	73(TCCTTTAAAAAA,-,0.00)
mm_103481.1	chr11	76495199	76495399	-	1	NA	NA	NA	-804	NM_001346670	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.025000	0.572139	
mm_39132.1	chr4	155154332	155154532	-	1	NA	NA	NA	67855	NM_001081100	76866	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0.000000	0.512438	
mm_57622.1	chr6	128233748	128233948	-	1	NA	NA	NA	-50045	NR_077223	330427	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	0.000000	0.427861	
mm_149977.1	chr19	29101271	29101471	+	1	NA	NA	NA	-4	NM_021525	59028	Mm.28630	NM_021525	ENSMUSG00000024785	Rcl1	2310040A02Rik|AI789745|C76567|RPCL1|Rnac	RNA terminal phosphate cyclase-like 1	protein-coding	0.095000	0.711443	
mm_166891.1	chr7	28140046	28140246	+	1	NA	NA	NA	10680	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.030000	0.502488	
mm_135419.1	chr16	45158567	45158767	-	1	NA	NA	NA	6	NM_028756	74102	Mm.264984	NM_028756	ENSMUSG00000022664	Slc35a5	1010001J06Rik|AU021179|BB097433|D16Ertd450e|D730043G07Rik	solute carrier family 35, member A5	protein-coding	0.095000	0.686567	
mm_148669.1	chr19	5637409	5637609	+	1	NA	NA	NA	19	NM_009045	19697	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.140000	0.726368	-61(TCCCCTAAAAAC,-,0.00)
mm_156086.1	chrX	110814304	110814504	+	1	NA	NA	NA	25	NM_008901	18994	Mm.56946	NM_008901	ENSMUSG00000056854	Pou3f4	Brn-4|Brn4|OTF-9|Otf9|Slf|oct-9	POU domain, class 3, transcription factor 4	protein-coding	0.055000	0.567164	
mm_126846.1	chr15	89079234	89079434	+	1	NA	NA	NA	3270	NM_026485	67976	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	0.005000	0.383085	
mm_19192.1	chr2	84425166	84425366	-	1	NA	NA	NA	0	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.040000	0.557214	
mm_62780.1	chr7	112427576	112427776	+	1	NA	NA	NA	-30	NM_020606	57342	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding	0.035000	0.582090	
mm_53205.1	chr6	125690277	125690477	+	1	NA	NA	NA	-42	NM_153589	243634	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.040000	0.606965	
mm_115060.1	chr13	100686097	100686297	+	1	NA	NA	NA	16716	NM_001168386	76041	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	0.010000	0.422886	
mm_7784.1	chr1	131279457	131279657	-	1	NA	NA	NA	6	NM_019777	56489	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.010000	0.522388	-82(CCCTTTAAGAGC,+,0.00),-82(CCCTTTAAGAGC,-,0.00),-81(CCTTTAAGAGCG,+,0.00)
mm_170015.1	chr17	17346112	17346312	-	1	NA	NA	NA	-28120	NM_025934	67045	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2 (yeast)	protein-coding	0.070000	0.502488	
mm_121008.1	chr14	79530580	79530780	+	1	NA	NA	NA	15006	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.015000	0.363184	
mm_123482.1	chr14	65981442	65981642	-	1	NA	NA	NA	13059	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.030000	0.492537	
mm_94453.1	chr11	6389463	6389663	+	1	NA	NA	NA	-5562	NM_001005867	52915	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.160000	0.805970	
mm_51702.1	chr6	86628099	86628299	+	1	NA	NA	NA	25	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.015000	0.597015	
mm_93093.1	chr10	89674093	89674293	-	1	NA	NA	NA	12092	NM_198021	213326	Mm.27651	NM_198021	ENSMUSG00000069539	Scyl2	AU015688|AW536445|BC030932|CVAK104|D10Ertd802e	SCY1-like 2 (S. cerevisiae)	protein-coding	0.000000	0.353234	
mm_92686.1	chr10	80645443	80645643	-	1	NA	NA	NA	11528	NM_145361	208198	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0.045000	0.601990	
mm_73340.1	chr8	105326283	105326483	+	1	NA	NA	NA	19	NM_025486	66320	Mm.29990	NM_025486	ENSMUSG00000014856	Tmem208	1700006C06Rik|2610030K20Rik|Hspc171	transmembrane protein 208	protein-coding	0.060000	0.572139	
mm_130591.1	chr15	99651505	99651705	-	1	NA	NA	NA	51	NM_001253808	26934	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	0.125000	0.661692	
mm_136834.1	chr17	12745769	12745969	+	1	NA	NA	NA	4558	NR_027784	104103	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.010000	0.512438	
mm_80852.1	chr9	98424706	98424906	+	1	NA	NA	NA	1845	NM_011254	19659	Mm.279741	NM_011254	ENSMUSG00000046402	Rbp1	CRBPI|Crbp|Rbp-1	retinol binding protein 1, cellular	protein-coding	0.100000	0.731343	
mm_72753.1	chr8	85299601	85299801	+	1	NA	NA	NA	69	NR_028268	56452	Mm.29709	NM_019716	ENSMUSG00000031697	Orc6	6720420I10Rik|Orc6l	origin recognition complex, subunit 6	protein-coding	0.095000	0.616915	
mm_135046.1	chr16	33186144	33186344	-	1	NA	NA	NA	1173	NM_176840	106326	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.015000	0.402985	
mm_115506.1	chr13	4279265	4279465	-	1	NA	NA	NA	34	NM_013777	622402	Mm.27447	NM_013777	ENSMUSG00000021211	Akr1c12	AI266976|Akra	aldo-keto reductase family 1, member C12	protein-coding	0.010000	0.462687	
mm_146882.1	chr18	25679581	25679781	-	1	NA	NA	NA	74302	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.060000	0.621891	
mm_159717.1	chr5	33722188	33722388	+	1	NA	NA	NA	-18	NM_001163217	14184	Mm.6904	NM_008010	ENSMUSG00000054252	Fgfr3	CD333|FR3|Fgfr-3|Flg-2|HBGFR|Mfr3|sam3	fibroblast growth factor receptor 3	protein-coding	0.115000	0.736318	
mm_105109.1	chr11	100970445	100970645	-	1	NA	NA	NA	72	NM_008986	19285	Mm.21864	NM_008986	ENSMUSG00000004044	Ptrf	2310075E07Rik|AW546441|Cav-p60|Cavin	polymerase I and transcript release factor	protein-coding	0.095000	0.671642	
mm_114814.1	chr13	91581729	91581929	+	1	NA	NA	NA	120732	NM_024186	66970	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.000000	0.283582	
mm_161418.1	chr15	34837320	34837520	+	1	NA	NA	NA	65	NM_181317	16539	Mm.71045	NM_181317	ENSMUSG00000050963	Kcns2	E130006J24Rik|Kv9.2	K+ voltage-gated channel, subfamily S, 2	protein-coding	0.100000	0.691542	
mm_147368.1	chr18	43438156	43438356	-	1	NA	NA	NA	30	NM_001291455	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.080000	0.681592	
mm_121777.1	chr14	19890366	19890566	-	1	NA	NA	NA	51541	NR_105025	52512	Mm.483998	NR_105025		D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.010000	0.462687	
mm_76547.1	chr8	88171841	88172041	-	1	NA	NA	NA	-27272	NM_001164499	214627	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0.000000	0.358209	
mm_26143.1	chr3	138064968	138065168	+	1	NA	NA	NA	2320	NR_037975	329763	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA	0.040000	0.527363	
mm_121960.1	chr14	25032648	25032848	-	1	NA	NA	NA	110493	NR_045718	75862	Mm.109191	NR_045718		4930572O13Rik	-	RIKEN cDNA 4930572O13 gene	ncRNA	0.005000	0.527363	
mm_160552.1	chr9	48964960	48965160	-	1	NA	NA	NA	-70	NM_020274	57014	Mm.117131	NM_020274	ENSMUSG00000008590	Htr3b	5-HT3B	5-hydroxytryptamine (serotonin) receptor 3B	protein-coding	0.010000	0.472637	
mm_10305.1	chr2	11171943	11172143	+	1	NA	NA	NA	-339	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.040000	0.477612	
mm_28113.1	chr3	86551174	86551374	-	1	NA	NA	NA	-2991	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.020000	0.427861	58(GTTTTAATACAC,+,0.00)
mm_77031.1	chr8	109251606	109251806	-	1	NA	NA	NA	89202	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo	0.045000	0.527363	73(GCTTTTAAAATC,+,0.00)
mm_138843.1	chr17	40519924	40520124	+	1	NA	NA	NA	2	NM_001177584	100126778	Mm.422023	NM_001177584	ENSMUSG00000090747	Esp8	Gm17495	exocrine gland secreted peptide 8	protein-coding	0.015000	0.492537	
mm_130628.1	chr15	100418008	100418208	-	1	NA	NA	NA	4947	NM_001146161	18174	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0.025000	0.437811	
mm_159594.1	chr4	126239852	126240052	-	1	NA	NA	NA	16367	NM_144941	245877	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0.035000	0.582090	
mm_53396.1	chr6	129588022	129588222	+	1	NA	NA	NA	-3689	NM_010654	16643	Mm.391515	NM_010654	ENSMUSG00000030165	Klrd1	CD94	killer cell lectin-like receptor, subfamily D, member 1	protein-coding	0.005000	0.378109	
mm_55949.1	chr6	85213803	85214003	-	1	NA	NA	NA	25972	NM_010131	13796	Mm.391473	NM_010131	ENSMUSG00000033726	Emx1	-	empty spiracles homeobox 1	protein-coding	0.005000	0.467662	
mm_74134.1	chr8	123212754	123212954	+	1	NA	NA	NA	-4	NM_177279	320869	Mm.258354	NM_177279	ENSMUSG00000048478	Spata33	4732415M23Rik|AI847264	spermatogenesis associated 33	protein-coding	0.140000	0.741294	
mm_112504.1	chr13	8301398	8301598	+	1	NA	NA	NA	98632	NM_052977	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding	0.000000	0.308458	
mm_157727.1	chrX	70364931	70365131	-	1	NA	NA	NA	54	NM_010498	15931	Mm.233083	NM_010498	ENSMUSG00000035847	Ids	AW214631	iduronate 2-sulfatase	protein-coding	0.115000	0.696517	
mm_96125.1	chr11	60777447	60777647	+	1	NA	NA	NA	22	NM_175491	237782	Mm.57726	NM_175491	ENSMUSG00000049323	Smcr8	2310076G09Rik|AI642055|D030073L15Rik	Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)	protein-coding	0.065000	0.572139	-85(GCCTCTTAAAAG,-,0.00),-84(CCTCTTAAAAGG,-,0.00),-83(CTCTTAAAAGGC,+,0.00),-82(TCTTAAAAGGCG,+,0.00)
mm_137123.1	chr17	22674285	22674485	+	1	NA	NA	NA	73237	NM_001104575	628185	Mm.390947	NM_001104575	ENSMUSG00000094921	Vmn2r112	EG628185|V2rp1	vomeronasal 2, receptor 112	protein-coding	0.020000	0.572139	
mm_142034.1	chr17	35242605	35242805	-	1	NA	NA	NA	-112	NM_001252457	53817	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	0.055000	0.587065	
mm_32766.1	chr4	116691832	116692032	+	1	NA	NA	NA	-5910	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.015000	0.383085	
mm_4819.1	chr1	185431854	185432054	+	1	NA	NA	NA	9865	NR_038006	319562	Mm.184335	NM_176943	ENSMUSG00000051295	9630028B13Rik	-	RIKEN cDNA 9630028B13 gene	ncRNA	0.030000	0.462687	-94(CCCTTTAAACTG,+,0.00),-64(GCCTATAAAAGA,-,0.00)
mm_71531.1	chr8	46890449	46890649	+	1	NA	NA	NA	-96338	NM_177304	320981	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.020000	0.482587	
mm_130941.1	chr15	103240653	103240853	-	1	NA	NA	NA	299	NR_002883	434858	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.035000	0.472637	
mm_26406.1	chr3	142606740	142606940	+	1	NA	NA	NA	11993	NM_010259	14468	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.010000	0.527363	
mm_149413.1	chr19	11421162	11421362	+	1	NA	NA	NA	13601	NM_029499	64380	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	0.005000	0.388060	
mm_21417.1	chr2	158127207	158127407	-	1	NA	NA	NA	19085	NM_009373	21817	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.025000	0.537313	
mm_102948.1	chr11	69617767	69617967	-	1	NA	NA	NA	38	NM_011367	20415	Mm.1431	NM_011367	ENSMUSG00000005202	Shbg	ABP	sex hormone binding globulin	protein-coding	0.020000	0.572139	
mm_13010.1	chr2	90917245	90917445	+	1	NA	NA	NA	705	NM_025576	66461	Mm.23926	NM_025576		Ptpmt1	1110001D10Rik|2810004N20Rik|PLIP	protein tyrosine phosphatase, mitochondrial 1	protein-coding	0.035000	0.597015	
mm_37878.1	chr4	132422284	132422484	-	1	NA	NA	NA	62	NM_001161797	100169	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0.075000	0.691542	
mm_134465.1	chr16	18426428	18426628	-	1	NA	NA	NA	111	NM_013711	26462	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0.130000	0.746269	
mm_14765.1	chr2	145460144	145460344	+	1	NA	NA	NA	94738	NM_001037929	627302	Mm.445953	NM_001037929		Gm14092	OTTMUSG00000015643	predicted gene 14092	protein-coding	0.010000	0.477612	
mm_38028.1	chr4	133872225	133872425	-	1	NA	NA	NA	2406	NM_001285506	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.010000	0.577114	
mm_168257.1	chr10	87180740	87180940	-	1	NA	NA	NA	122794	NM_029685	76640	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding	0.030000	0.482587	
mm_37277.1	chr4	118636267	118636467	-	1	NA	NA	NA	9963	NR_029469	100041290	Mm.472885	NR_029469		D4Ertd617e	-	DNA segment, Chr 4, ERATO Doi 617, expressed	ncRNA	0.035000	0.522388	
mm_115379.1	chr13	113095814	113096014	+	1	NA	NA	NA	5067	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.005000	0.402985	
mm_67676.1	chr7	89188213	89188413	-	1	NA	NA	NA	150474	NM_028343	72759	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.005000	0.343284	
mm_119116.1	chr14	31019602	31019802	+	1	NA	NA	NA	564	NM_001081251	66923	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	0.035000	0.353234	
mm_163985.1	chr14	61046448	61046648	-	1	NA	NA	NA	307	NM_013869	29820	Mm.281356	NM_013869	ENSMUSG00000060548	Tnfrsf19	AL023044|AW123854|TAJ|TAJ-ALPHA|TRADE|Troy	tumor necrosis factor receptor superfamily, member 19	protein-coding	0.075000	0.666667	
mm_127553.1	chr15	102150312	102150512	+	1	NA	NA	NA	-163	NM_146064	223920	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	0.025000	0.512438	
mm_88889.1	chr10	81136471	81136671	+	1	NA	NA	NA	300	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.135000	0.701493	-94(CCTTTAAGACGA,+,0.00)
mm_167257.1	chr8	25363844	25364044	-	1	NA	NA	NA	-57674	NR_040352	74489	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0.005000	0.378109	-76(CACTTTTTAAAG,-,0.00),-74(CTTTTTAAAGAT,+,0.00)
mm_55784.1	chr6	82652376	82652576	-	1	NA	NA	NA	389	NM_025882	66979	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	0.050000	0.587065	
mm_25521.1	chr3	114030751	114030951	+	1	NA	NA	NA	311	NM_007729	12814	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding	0.045000	0.507463	
mm_158973.1	chr1	109982355	109982555	+	1	NA	NA	NA	-445	NM_001316743	241201	Mm.213407	NM_172853	ENSMUSG00000026312	Cdh7	9330156F07Rik|CDH7L1	cadherin 7, type 2	protein-coding	0.045000	0.537313	
mm_11292.1	chr2	30133679	30133879	+	1	NA	NA	NA	33	NM_146252	70296	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0.105000	0.711443	
mm_160748.1	chr10	81343230	81343430	-	1	NA	NA	NA	-64	NM_148951	209047	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0.145000	0.776119	
mm_153392.1	chr19	40383042	40383242	-	1	NA	NA	NA	19168	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.010000	0.497512	
mm_69739.1	chr7	140941360	140941560	-	1	NA	NA	NA	-121	NM_145387	212974	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0.035000	0.542289	89(GGCTATTTAAGG,-,0.00)
mm_152455.1	chr19	10845413	10845613	-	1	NA	NA	NA	2969	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.005000	0.437811	
mm_63498.1	chr7	127800512	127800712	+	1	NA	NA	NA	3	NM_001040684	101502	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	0.020000	0.601990	
mm_105907.1	chr11	114983105	114983305	-	1	NA	NA	NA	6681	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.005000	0.502488	
mm_51959.1	chr6	91757724	91757924	+	1	NA	NA	NA	49569	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.005000	0.532338	
mm_135195.1	chr16	36450473	36450673	-	1	NA	NA	NA	4819	NM_025288	20863	Mm.136573	NM_025288	ENSMUSG00000054905	Stfa3	Stf3	stefin A3	protein-coding	0.010000	0.373134	
mm_138661.1	chr17	35868624	35868824	+	1	NA	NA	NA	2109	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.015000	0.577114	
mm_155297.1	chrX	61185440	61185640	+	1	NA	NA	NA	18	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.025000	0.402985	
mm_13240.1	chr2	98662489	98662689	+	1	NA	NA	NA	1194932	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.035000	0.333333	
mm_161250.1	chr13	101768050	101768250	-	1	NA	NA	NA	67	NM_001077495	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.105000	0.731343	
mm_111094.1	chr12	80441446	80441646	-	1	NA	NA	NA	-4945	NM_177267	320808	Mm.220310	NM_177267	ENSMUSG00000049106	Dcaf5	9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22	DDB1 and CUL4 associated factor 5	protein-coding	0.020000	0.363184	
mm_116919.1	chr13	55528436	55528636	-	1	NA	NA	NA	2	NM_013739	27261	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	0.030000	0.587065	
mm_155888.1	chrX	101640964	101641164	+	1	NA	NA	NA	846	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.050000	0.572139	
mm_151537.1	chr19	58980023	58980223	+	1	NA	NA	NA	-36451	NM_001327998	73442	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0.005000	0.393035	-93(GTCTTTATAAAG,-,0.00),-91(CTTTATAAAGTA,+,0.00),-33(GTGTATAAATGA,-,0.00)
mm_63064.1	chr7	122079916	122080116	+	1	NA	NA	NA	12818	NM_138589	28018	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	0.020000	0.452736	
mm_13614.1	chr2	113405083	113405283	+	1	NA	NA	NA	-35881	NM_001285459	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.015000	0.557214	
mm_75000.1	chr8	27228121	27228321	-	1	NA	NA	NA	1367	NM_013462	11556	Mm.278475	NM_013462	ENSMUSG00000031489	Adrb3	Adrb-3	adrenergic receptor, beta 3	protein-coding	0.060000	0.611940	
mm_23887.1	chr3	83031205	83031405	+	1	NA	NA	NA	5152	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.030000	0.587065	
mm_15585.1	chr2	158794773	158794973	+	1	NA	NA	NA	66	NM_001291144	71715	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	0.075000	0.671642	
mm_74972.1	chr8	27107361	27107561	-	1	NA	NA	NA	21171	NM_025686	66653	Mm.334467	NM_025686	ENSMUSG00000031487	Brf2	2700059M06Rik|5730512K07Rik|AU018504|AU022602|BRFU|TFIIIB50	BRF2, RNA polymerase III transcription initiation factor 50kDa subunit	protein-coding	0.005000	0.527363	
mm_160923.1	chr11	85170960	85171160	+	1	NA	NA	NA	-36	NM_028589	73634	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0.005000	0.562189	
mm_146245.1	chr18	77714103	77714303	+	1	NA	NA	NA	19	NR_027978	67640	Mm.482903	NM_026289		4930465K10Rik	-	RIKEN cDNA 4930465K10 gene	ncRNA	0.165000	0.741294	51(AGCCTTAAAAGC,-,0.00),52(GCCTTAAAAGCA,+,0.00)
mm_24317.1	chr3	89430181	89430381	+	1	NA	NA	NA	67	NM_001293763	68911	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	0.105000	0.716418	
mm_26731.1	chr3	5515234	5515434	-	1	NA	NA	NA	60914	NM_001163301	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.000000	0.572139	
mm_11852.1	chr2	45679941	45680141	+	1	NA	NA	NA	-16564	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.005000	0.393035	
mm_27925.1	chr3	79550275	79550475	-	1	NA	NA	NA	17304	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.000000	0.363184	74(CTCTTTAAAAGT,-,0.00)
mm_165135.1	chr2	11172284	11172484	+	1	NA	NA	NA	2	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.130000	0.736318	
mm_90215.1	chr10	120979316	120979516	+	1	NA	NA	NA	-86	NM_001081193	380664	Mm.339371	NM_001081193	ENSMUSG00000048661	Lemd3	AI316861|Man1	LEM domain containing 3	protein-coding	0.140000	0.721393	
mm_91719.1	chr10	44458633	44458833	-	1	NA	NA	NA	15	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.095000	0.651741	
mm_73818.1	chr8	117403740	117403940	+	1	NA	NA	NA	-49183	NR_106045	102466801		NR_106045	ENSMUSG00000099062	Mir7077	Gm27774|mmu-mir-7077	microRNA 7077	ncRNA	0.040000	0.606965	
mm_97449.1	chr11	78189502	78189702	+	1	NA	NA	NA	854	NM_033475	19376	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	0.040000	0.572139	
mm_49000.1	chr6	4756707	4756907	+	1	NA	NA	NA	9501	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.025000	0.502488	
mm_152244.1	chr19	8714104	8714304	-	1	NA	NA	NA	-307	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.040000	0.547264	
mm_38535.1	chr4	141571386	141571586	-	1	NA	NA	NA	25324	NR_030695	320456	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.020000	0.592040	
mm_140123.1	chr17	79611685	79611885	+	1	NA	NA	NA	-3115	NM_201361	381110	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.015000	0.427861	
mm_37537.1	chr4	125066491	125066691	-	1	NA	NA	NA	-102	NM_175246	76793	Mm.22548	NM_175246	ENSMUSG00000050213	Snip1	2410133M08Rik	Smad nuclear interacting protein 1	protein-coding	0.080000	0.686567	
mm_83362.1	chr9	44407439	44407639	-	1	NA	NA	NA	9	NM_021789	60409	Mm.29814	NM_021789	ENSMUSG00000032112	Trappc4	1500017G03Rik|AI303617|HSPC172|PTD009|Sbd|Sbdn|Sdcbp2|TRS23	trafficking protein particle complex 4	protein-coding	0.025000	0.507463	
mm_127117.1	chr15	97984087	97984287	+	1	NA	NA	NA	19958	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.020000	0.527363	
mm_28582.1	chr3	93511077	93511277	-	1	NA	NA	NA	-9319	NM_016740	20195	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0.005000	0.447761	
mm_9117.1	chr1	170198679	170198879	-	1	NA	NA	NA	16614	NM_010633	16589	Mm.209150	NM_010633	ENSMUSG00000026667	Uhmk1	4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|OTTMUSG00000021542|P-CIP2	U2AF homology motif (UHM) kinase 1	protein-coding	0.025000	0.527363	
mm_79059.1	chr9	46230116	46230316	+	1	NA	NA	NA	1586	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.075000	0.616915	
mm_168856.1	chr12	26456369	26456569	-	1	NA	NA	NA	-17	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.010000	0.532338	4(CAGTTTATAAGC,-,0.00),6(GTTTATAAGCCC,+,0.00)
mm_16606.1	chr2	5080470	5080670	-	1	NA	NA	NA	-16632	NM_181848	71648	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0.045000	0.537313	
mm_168099.1	chr10	128911729	128911929	+	1	NA	NA	NA	1963	NM_007653	12512	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.010000	0.547264	-78(CCCTTTAAATCC,+,0.00)
mm_167296.1	chr8	47425514	47425714	+	1	NA	NA	NA	-73266	NM_175162	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.005000	0.407960	
mm_8279.1	chr1	139990570	139990770	-	1	NA	NA	NA	-131971	NM_001025575	545366	Mm.439660	NM_001025575	ENSMUSG00000033898	Cfhr2	Cfhrb_4/2	complement factor H-related 2	protein-coding	0.010000	0.368159	
mm_111081.1	chr12	80231385	80231585	-	1	NA	NA	NA	28886	NM_134156	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.020000	0.557214	
mm_108874.1	chr12	99645378	99645578	+	1	NA	NA	NA	-17504	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.055000	0.507463	38(AACTTTAAATGG,-,0.00)
mm_155798.1	chrX	98948497	98948697	+	1	NA	NA	NA	10816	NM_207633	77929	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	0.015000	0.477612	
mm_21460.1	chr2	160872859	160873059	-	1	NA	NA	NA	31	NM_177263	320799	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	0.145000	0.761194	
mm_72583.1	chr8	84205132	84205332	+	1	NA	NA	NA	-3286	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.015000	0.482587	
mm_130110.1	chr15	89476062	89476262	-	1	NA	NA	NA	-90	NR_077233	100532730	Mm.461541	NR_077233		C230037L18Rik	-	RIKEN cDNA C230037L18 gene	ncRNA	0.085000	0.646766	
mm_110437.1	chr12	49381727	49381927	-	1	NA	NA	NA	-1056	NM_001160112	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.055000	0.562189	
mm_16752.1	chr2	9863469	9863669	-	1	NA	NA	NA	15031	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.005000	0.462687	6(CACTCTAAAAGA,-,0.00)
mm_52892.1	chr6	122602588	122602788	+	1	NA	NA	NA	-244	NM_001134391	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.015000	0.457711	
mm_59318.1	chr7	25301253	25301453	+	1	NA	NA	NA	-6	NM_001081294	623131	Mm.172160	NM_001081294	ENSMUSG00000058741	Prr19	EG623131	proline rich 19	protein-coding	0.065000	0.621891	
mm_35220.1	chr4	19656120	19656320	-	1	NA	NA	NA	52784	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.005000	0.383085	
mm_34201.1	chr4	140906244	140906444	+	1	NA	NA	NA	-16	NM_008812	18600	Mm.2296	NM_008812	ENSMUSG00000028927	Padi2	Pdi|Pdi2|mKIAA0994	peptidyl arginine deiminase, type II	protein-coding	0.090000	0.706468	
mm_75771.1	chr8	69986052	69986252	-	1	NA	NA	NA	10232	NM_001286450	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.010000	0.358209	
mm_94899.1	chr11	29172872	29173072	+	1	NA	NA	NA	65	NM_134034	104570	Mm.276386	NM_134034	ENSMUSG00000020463	Smek2	AW011752|AW557776|Ppp4r3b|mKIAA1387	SMEK homolog 2, suppressor of mek1 (Dictyostelium)	protein-coding	0.100000	0.626866	
mm_38106.1	chr4	134517493	134517693	-	1	NA	NA	NA	6594	NM_001081099	69885	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	0.060000	0.601990	
mm_51167.1	chr6	70726435	70726635	+	1	NA	NA	NA	65640	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.492537	
mm_17567.1	chr2	30205715	30205915	-	1	NA	NA	NA	-116	NM_172404	70266	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	0.045000	0.542289	0(GTCTTTAAAGGG,+,0.00),0(GTCTTTAAAGGG,-,0.00),1(TCTTTAAAGGGC,+,0.00)
mm_42996.1	chr5	123394635	123394835	+	1	NA	NA	NA	-63	NM_133917	208104	Mm.83277	NM_133917	ENSMUSG00000038342	Mlxip	AW228700|Mir|bHLHe36	MLX interacting protein	protein-coding	0.100000	0.646766	-13(ACCTTTAAGAGG,-,0.00),-12(CCTTTAAGAGGC,+,0.00)
mm_118925.1	chr14	27000611	27000811	+	1	NA	NA	NA	349	NM_010420	15209	Mm.4802	NM_010420	ENSMUSG00000040726	Hesx1	HES-1|Rpx	homeobox gene expressed in ES cells	protein-coding	0.040000	0.587065	
mm_172012.1	chr6	109505366	109505566	-	1	NA	NA	NA	676825	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.040000	0.462687	
mm_17358.1	chr2	26617380	26617580	-	1	NA	NA	NA	-10977	NM_019833	56279	Mm.279863	NM_019833	ENSMUSG00000036186	Fam69b	AB030186|AW209000|B230317C12Rik|PIP49	family with sequence similarity 69, member B	protein-coding	0.020000	0.497512	
mm_148461.1	chr19	4066318	4066518	+	1	NA	NA	NA	-7124	NM_144869	225884	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.025000	0.522388	
mm_156498.1	chrX	144352592	144352792	+	1	NA	NA	NA	34726	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.005000	0.412935	
mm_28360.1	chr3	89870086	89870286	-	1	NA	NA	NA	38816	NM_172530	214547	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.015000	0.417910	-96(GTTTTTAGAGAA,+,0.00)
mm_29387.1	chr3	108889729	108889929	-	1	NA	NA	NA	179	NM_177091	320181	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0.015000	0.507463	
mm_17291.1	chr2	26204559	26204759	-	1	NA	NA	NA	1916	NM_001039653	16871	Mm.386765	NM_010711	ENSMUSG00000026934	Lhx3	Lim3|P-LIM|mLIM3|mLim-3	LIM homeobox protein 3	protein-coding	0.005000	0.422886	
mm_62635.1	chr7	107661797	107661997	+	1	NA	NA	NA	55053	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.005000	0.398010	
mm_64887.1	chr7	15920685	15920885	-	1	NA	NA	NA	1586	NM_009156	20364	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0.010000	0.542289	
mm_10921.1	chr2	25424553	25424753	+	1	NA	NA	NA	959	NM_001177367	14347	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	0.005000	0.542289	
mm_87004.1	chr10	26801323	26801523	+	1	NA	NA	NA	28911	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.005000	0.348259	
mm_57043.1	chr6	122340434	122340634	-	1	NA	NA	NA	-307	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.050000	0.472637	
mm_149036.1	chr19	8819495	8819695	+	1	NA	NA	NA	194	NM_001081196	68693	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0.030000	0.552239	
mm_11501.1	chr2	32535301	32535501	+	1	NA	NA	NA	42	NM_153560	98952	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.145000	0.746269	
mm_122140.1	chr14	31168497	31168697	-	1	NA	NA	NA	44	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.030000	0.592040	-32(AGCTTTTAAAGC,-,0.00),-31(GCTTTTAAAGCG,+,0.00),-30(CTTTTAAAGCGG,+,0.00)
mm_51678.1	chr6	86438653	86438853	+	1	NA	NA	NA	107	NM_001243741	232196	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	0.070000	0.527363	
mm_78783.1	chr9	43993888	43994088	+	1	NA	NA	NA	-49396	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.005000	0.512438	
mm_126149.1	chr15	78406085	78406285	+	1	NA	NA	NA	-326	NM_009437	22117	Mm.15312	NM_009437	ENSMUSG00000044986	Tst	Rhodanese	thiosulfate sulfurtransferase, mitochondrial	protein-coding	0.035000	0.517413	
mm_112328.1	chr12	115742589	115742789	-	1	NA	NA	NA	-46895	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.005000	0.447761	
mm_171028.1	chr2	88241304	88241504	+	1	NA	NA	NA	-16374	NM_146532	258525	Mm.377552	NM_146532	ENSMUSG00000075133	Olfr1170	MOR174-12	olfactory receptor 1170	protein-coding	0.060000	0.651741	
mm_63613.1	chr7	128237207	128237407	+	1	NA	NA	NA	-50	NM_146205	233912	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0.065000	0.626866	
mm_129961.1	chr15	85577786	85577986	-	1	NA	NA	NA	184	NM_001163634	22422	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	0.080000	0.666667	
mm_151369.1	chr19	55931414	55931614	+	1	NA	NA	NA	36193	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.035000	0.572139	
mm_131105.1	chr16	5007478	5007678	+	1	NA	NA	NA	262	NR_045596	432995	Mm.271618	NM_001253796	ENSMUSG00000096215	Smim22	EG432995|Gm5480	small integral membrane protein 22	protein-coding	0.005000	0.582090	
mm_109004.1	chr12	103314871	103315071	+	1	NA	NA	NA	12	NM_001195726	100504156	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	0.055000	0.661692	
mm_118509.1	chr14	14013060	14013260	+	1	NA	NA	NA	669	NM_139227	246103	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0.135000	0.756219	
mm_163755.1	chr13	119790682	119790882	-	1	NA	NA	NA	24	NM_028245	72465	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0.135000	0.761194	
mm_148555.1	chr19	4712111	4712311	+	1	NA	NA	NA	988	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	0.165000	0.820896	
mm_98358.1	chr11	93886046	93886246	+	1	NA	NA	NA	-61	NM_001346525	103537	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	0.080000	0.646766	
mm_71713.1	chr8	61942682	61942882	+	1	NA	NA	NA	14695	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.020000	0.447761	
mm_127526.1	chr15	102074095	102074295	+	1	NA	NA	NA	422	NM_145625	75705	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0.075000	0.651741	
mm_76964.1	chr8	106136796	106136996	-	1	NA	NA	NA	78	NM_176838	77411	Mm.183003	NM_176838	ENSMUSG00000084128	Esrp2	9530027K23Rik|Rbm35b	epithelial splicing regulatory protein 2	protein-coding	0.115000	0.711443	
mm_131271.1	chr16	10976257	10976457	+	1	NA	NA	NA	16764	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.025000	0.527363	
mm_134237.1	chr16	11909287	11909487	-	1	NA	NA	NA	36	NM_146067	223978	Mm.86360	NM_146067	ENSMUSG00000065979	Cpped1	C530044N13Rik	calcineurin-like phosphoesterase domain containing 1	protein-coding	0.070000	0.691542	
mm_165681.1	chr3	90692684	90692884	+	1	NA	NA	NA	2937	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.005000	0.492537	
mm_79075.1	chr9	46241454	46241654	+	1	NA	NA	NA	710	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.025000	0.552239	
mm_33427.1	chr4	130050645	130050845	+	1	NA	NA	NA	2905	NM_028266	107581	Mm.41860	NM_028266	ENSMUSG00000040690	Col16a1	2700007F12Rik|A530052M23Rik|AI838662|CA1F	collagen, type XVI, alpha 1	protein-coding	0.010000	0.557214	
mm_8396.1	chr1	151472005	151472205	-	1	NA	NA	NA	28718	NM_011277	19821	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0.010000	0.358209	
mm_138489.1	chr17	35200246	35200446	+	1	NA	NA	NA	1661	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.025000	0.577114	
mm_54608.1	chr6	38342970	38343170	-	1	NA	NA	NA	11533	NM_028864	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.010000	0.462687	
mm_67815.1	chr7	98162364	98162564	-	1	NA	NA	NA	-122	NM_001301250	12337	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0.020000	0.577114	
mm_110950.1	chr12	76668603	76668803	-	1	NA	NA	NA	41844	NM_013675	20741	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0.015000	0.472637	
mm_121081.1	chr14	99099819	99100019	+	1	NA	NA	NA	-149	NM_028315	72662	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	0.075000	0.631841	
mm_172239.1	chr6	68632361	68632561	-	1	NA	NA	NA	694713	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.427861	
mm_94506.1	chr11	7199789	7199989	+	1	NA	NA	NA	2102	NM_008341	16006	Mm.21300	NM_008341	ENSMUSG00000020429	Igfbp1	-	insulin-like growth factor binding protein 1	protein-coding	0.040000	0.552239	
mm_79135.1	chr9	47618559	47618759	+	1	NA	NA	NA	88307	NM_018770	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.025000	0.427861	
mm_53151.1	chr6	125265442	125265642	+	1	NA	NA	NA	17	NR_015527	73870	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.025000	0.502488	
mm_169932.1	chr16	59092287	59092487	+	1	NA	NA	NA	-5906	NM_001011807	258035	Mm.377334	NM_001011807	ENSMUSG00000094539	Olfr191	MOR183-5P	olfactory receptor 191	protein-coding	0.015000	0.507463	-31(GCCTATATAAGC,-,0.00)
mm_47134.1	chr5	120494311	120494511	-	1	NA	NA	NA	9212	NM_023625	71772	Mm.100065	NM_023625	ENSMUSG00000029598	Plbd2	1300012G16Rik|AU019810|P76	phospholipase B domain containing 2	protein-coding	0.040000	0.577114	
mm_15303.1	chr2	155386783	155386983	+	1	NA	NA	NA	5027	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.040000	0.592040	
mm_147990.1	chr18	67641171	67641371	-	1	NA	NA	NA	65	NM_001081073	225659	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0.150000	0.721393	
mm_152859.1	chr19	24200547	24200747	-	1	NA	NA	NA	24379	NM_011597	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.040000	0.477612	
mm_27006.1	chr3	25847334	25847534	-	1	NA	NA	NA	305873	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.010000	0.417910	
mm_89036.1	chr10	82795839	82796039	+	1	NA	NA	NA	-16184	NR_038042	70003	Mm.48789	NR_038042	ENSMUSG00000056821	1700028I16Rik	-	RIKEN cDNA 1700028I16 gene	ncRNA	0.025000	0.507463	
mm_64751.1	chr7	4792718	4792918	-	1	NA	NA	NA	-147	NM_009081	19943	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	0.105000	0.621891	
mm_29627.1	chr3	121548002	121548202	-	1	NA	NA	NA	-15758	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.020000	0.477612	
mm_9581.1	chr1	174028273	174028473	-	1	NA	NA	NA	3382	NM_172648	226695	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	0.005000	0.343284	
mm_156214.1	chrX	134686432	134686632	+	1	NA	NA	NA	13	NM_001202500	100503043	Mm.31961	NM_001202500	ENSMUSG00000049804	Armcx4	AI448196|Gm195	armadillo repeat containing, X-linked 4	protein-coding	0.095000	0.696517	
mm_171893.1	chr5	3893815	3894015	-	1	NA	NA	NA	18	NM_001013023	545725	Mm.99593	NM_172135	ENSMUSG00000040429	Mterf1a	4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b	mitochondrial transcription termination factor 1a	protein-coding	0.100000	0.676617	
mm_78485.1	chr9	32698161	32698361	+	1	NA	NA	NA	2219	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.000000	0.293532	
mm_143449.1	chr17	70919808	70920008	-	1	NA	NA	NA	-66376	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.010000	0.398010	
mm_99239.1	chr11	101078258	101078458	+	1	NA	NA	NA	-53	NM_010475	15485	Mm.188939	NM_010475	ENSMUSG00000019301	Hsd17b1	17HSDB1|17beta-HSD|E2DH|Hsd17ba	hydroxysteroid (17-beta) dehydrogenase 1	protein-coding	0.020000	0.562189	
mm_20312.1	chr2	127272655	127272855	-	1	NA	NA	NA	2526	NM_139308	99138	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0.010000	0.502488	
mm_73256.1	chr8	104340294	104340494	+	1	NA	NA	NA	-200	NM_024217	68119	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.005000	0.542289	
mm_26122.1	chr3	137865770	137865970	+	1	NA	NA	NA	1383	NM_016750	51788	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0.025000	0.427861	
mm_123712.1	chr14	69815921	69816121	-	1	NA	NA	NA	-10476	NM_153514	246710	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0.010000	0.557214	
mm_87157.1	chr10	36525290	36525490	+	1	NA	NA	NA	18583	NM_001253356	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0.000000	0.378109	
mm_105385.1	chr11	103360283	103360483	-	1	NA	NA	NA	3309	NM_183288	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.130000	0.731343	
mm_55197.1	chr6	52204145	52204345	-	1	NA	NA	NA	342	NM_010453	15402	Mm.173	NM_010453	ENSMUSG00000038253	Hoxa5	Hox-1.3	homeobox A5	protein-coding	0.090000	0.547264	
mm_77469.1	chr8	122426150	122426350	-	1	NA	NA	NA	4165	NM_145834	234836	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.025000	0.597015	
mm_150328.1	chr19	34574631	34574831	+	1	NA	NA	NA	-8798	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.005000	0.427861	
mm_129670.1	chr15	81360742	81360942	-	1	NA	NA	NA	-77	NM_011399	20524	Mm.222536	NM_011399	ENSMUSG00000022404	Slc25a17	34kDa|47kDa|PMP34|Pmp47	solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17	protein-coding	0.070000	0.616915	
mm_26868.1	chr3	16183739	16183939	-	1	NA	NA	NA	656	NM_001145919	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.070000	0.606965	
mm_5002.1	chr1	191928546	191928746	+	1	NA	NA	NA	-21119	NR_030669	98736	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	0.025000	0.497512	
mm_158993.1	chr1	136008028	136008228	+	1	NA	NA	NA	-91	NM_001160145	66241	Mm.41773	NM_025439	ENSMUSG00000026411	Tmem9	1500015G18Rik|AW545782	transmembrane protein 9	protein-coding	0.020000	0.522388	
mm_121389.1	chr14	118981840	118982040	+	1	NA	NA	NA	44008	NM_008929	100037258	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.005000	0.383085	
mm_151777.1	chr19	5349249	5349449	-	1	NA	NA	NA	225	NM_028623	73720	Mm.36816	NM_028623	ENSMUSG00000024846	Cst6	1110017E11Rik|N28197|ichq	cystatin E/M	protein-coding	0.085000	0.656716	
mm_166413.1	chr5	137151375	137151575	-	1	NA	NA	NA	-35268	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.487562	
mm_11419.1	chr2	31688308	31688508	+	1	NA	NA	NA	-129	NM_001283047	11350	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.095000	0.621891	-32(ACCTTTAAAAGG,-,0.00),-31(CCTTTAAAAGGT,+,0.00),-30(CTTTAAAAGGTC,+,0.00)
mm_173264.1	chrX	94911445	94911645	+	1	NA	NA	NA	-113256	NR_003292	668171	Mm.426134	NR_003292		Zxda	4933406P09Rik|AW413531	zinc finger, X-linked, duplicated A	pseudo	0.010000	0.353234	-70(GTTTTTAAAAAG,-,0.00),23(GTTTTTTAAAGG,-,0.00),24(TTTTTTAAAGGA,+,0.00)
mm_71600.1	chr8	54985853	54986053	+	1	NA	NA	NA	31225	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.000000	0.298507	
mm_28871.1	chr3	97702582	97702782	-	1	NA	NA	NA	-12120	NR_106084	102466229		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	0.025000	0.442786	
mm_120760.1	chr14	73368207	73368407	+	1	NA	NA	NA	16964	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.035000	0.482587	
mm_170973.1	chr2	64313260	64313460	+	1	NA	NA	NA	-215322	NM_001267847	60344	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.065000	0.661692	
mm_96534.1	chr11	68614120	68614320	+	1	NA	NA	NA	27183	NM_177779	276920	Mm.123046	NM_177779	ENSMUSG00000045915	Ccdc42	A530001H01Rik	coiled-coil domain containing 42	protein-coding	0.025000	0.512438	
mm_110258.1	chr12	31713645	31713845	-	1	NA	NA	NA	181	NM_175191	73010	Mm.441517	NM_175191	ENSMUSG00000044067	Gpr22	2900068K05Rik|AW061316	G protein-coupled receptor 22	protein-coding	0.015000	0.462687	
mm_146238.1	chr18	77186002	77186202	+	1	NA	NA	NA	255	NM_013666	225742	Mm.365178	NM_013666	ENSMUSG00000025425	St8sia5	ST8SiaV|Siat8e	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding	0.095000	0.641791	
mm_148743.1	chr19	6036616	6036816	+	1	NA	NA	NA	-9860	NM_028769	74126	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0.010000	0.482587	
mm_59155.1	chr7	24370224	24370424	+	1	NA	NA	NA	61	NM_008433	16534	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0.020000	0.656716	
mm_47390.1	chr5	123015803	123016003	-	1	NA	NA	NA	829	NM_175423	109305	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.025000	0.487562	
mm_585.1	chr1	39369091	39369291	+	1	NA	NA	NA	1340	NM_001252218	114641	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.010000	0.477612	
mm_68093.1	chr7	101921672	101921872	-	1	NA	NA	NA	-998	NM_001162974	69358	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0.015000	0.457711	
mm_171814.1	chr5	137338260	137338460	-	1	NA	NA	NA	-4778	NM_031406	83704	Mm.235625	NM_031406	ENSMUSG00000037344	Slc12a9	CIP1	solute carrier family 12 (potassium/chloride transporters), member 9	protein-coding	0.050000	0.522388	
mm_164720.1	chr17	56866237	56866437	+	1	NA	NA	NA	8110	NM_001039114	328845	Mm.179421	NM_001039114	ENSMUSG00000024207	Acsbg2	Bgr	acyl-CoA synthetase bubblegum family member 2	protein-coding	0.015000	0.512438	
mm_22975.1	chr3	32712092	32712292	+	1	NA	NA	NA	3646	NM_019673	56456	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0.035000	0.537313	
mm_156706.1	chrX	159627147	159627347	+	1	NA	NA	NA	-25	NM_001135727	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.105000	0.716418	
mm_136920.1	chr17	13845991	13846191	+	1	NA	NA	NA	-84697	NM_022311	21646	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0.005000	0.437811	
mm_22441.1	chr2	181693562	181693762	-	1	NA	NA	NA	148	NM_001291206	56470	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0.060000	0.626866	
mm_116437.1	chr13	42245664	42245864	-	1	NA	NA	NA	-55712	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.000000	0.378109	
mm_60437.1	chr7	44476845	44477045	+	1	NA	NA	NA	6598	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.402985	
mm_12364.1	chr2	69789524	69789724	+	1	NA	NA	NA	-113	NM_028521	73373	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	0.095000	0.616915	
mm_2806.1	chr1	130865657	130865857	+	1	NA	NA	NA	-20	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.015000	0.452736	
mm_154682.1	chrX	7921992	7922192	+	1	NA	NA	NA	2270	NM_013892	30052	Mm.4881	NM_013892	ENSMUSG00000039278	Pcsk1n	AI848336|KEP|PEN|PEN19|PEN20|Pan3|SAAS|SAASCT|bLEN|lLEN|proSAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding	0.095000	0.661692	
mm_9046.1	chr1	167284572	167284772	-	1	NA	NA	NA	455	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.175000	0.800995	
mm_143576.1	chr17	74316180	74316380	-	1	NA	NA	NA	-69	NM_001146224	66310	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0.110000	0.721393	
mm_58059.1	chr6	136857600	136857800	-	1	NA	NA	NA	-100	NM_026639	109978	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	0.020000	0.572139	
mm_39694.1	chr5	27049458	27049658	+	1	NA	NA	NA	359	NM_207282	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.065000	0.582090	
mm_73915.1	chr8	119666374	119666574	+	1	NA	NA	NA	109	NM_023395	67866	Mm.87599	NM_023395	ENSMUSG00000023336	Wfdc1	2310058A03Rik|ps20	WAP four-disulfide core domain 1	protein-coding	0.030000	0.626866	
mm_56344.1	chr6	92908245	92908445	-	1	NA	NA	NA	-6904	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	0.000000	0.243781	
mm_80322.1	chr9	74953083	74953283	+	1	NA	NA	NA	130	NM_001113283	235493	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	0.095000	0.731343	
mm_50032.1	chr6	41130179	41130379	+	1	NA	NA	NA	-94770	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.457711	
mm_81068.1	chr9	106189150	106189350	+	1	NA	NA	NA	9689	NM_198931	67905	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	0.000000	0.407960	
mm_109338.1	chr12	109584955	109585155	+	1	NA	NA	NA	-734	NR_029765	723843		NR_029765	ENSMUSG00000065526	Mir337	Mirn337|mir-337|mmu-mir-337	microRNA 337	ncRNA	0.000000	0.452736	
mm_12164.1	chr2	62395058	62395258	+	1	NA	NA	NA	17073	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.000000	0.457711	
mm_157492.1	chrX	48429134	48429334	-	1	NA	NA	NA	33898	NM_019680	56501	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|ENSMUSG00000053512|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	0.000000	0.432836	
mm_13288.1	chr2	101649728	101649928	+	1	NA	NA	NA	-296	NM_009019	19373	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0.020000	0.457711	
mm_23156.1	chr3	40531455	40531655	+	1	NA	NA	NA	-8643	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.075000	0.676617	
mm_53235.1	chr6	127446782	127446982	+	1	NA	NA	NA	42	NM_001346513	101187	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.020000	0.462687	
mm_100603.1	chr11	121245285	121245485	+	1	NA	NA	NA	8149	NM_026272	67608	Mm.291832	NM_026272	ENSMUSG00000000056	Narf	4430402O11Rik	nuclear prelamin A recognition factor	protein-coding	0.020000	0.552239	
mm_23182.1	chr3	40949698	40949898	+	1	NA	NA	NA	-833	NM_001040399	214048	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0.120000	0.741294	
mm_33874.1	chr4	136144688	136144888	+	1	NA	NA	NA	966	NM_008321	15903	Mm.110	NM_008321	ENSMUSG00000007872	Id3	Hlh462|Idb3|bHLHb25	inhibitor of DNA binding 3	protein-coding	0.080000	0.676617	
mm_74157.1	chr8	123397682	123397882	+	1	NA	NA	NA	-9300	NM_008559	17199	Mm.324942	NM_008559	ENSMUSG00000074037	Mc1r	Mcr1|Mshra|Tob|e	melanocortin 1 receptor	protein-coding	0.005000	0.532338	
mm_100399.1	chr11	119392852	119393052	+	1	NA	NA	NA	2480	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.025000	0.522388	
mm_113836.1	chr13	47122640	47122840	+	1	NA	NA	NA	20	NM_146042	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.070000	0.661692	
mm_149499.1	chr19	11912332	11912532	+	1	NA	NA	NA	33	NM_172635	225929	Mm.42711	NM_172635	ENSMUSG00000046139	Patl1	AV312086|Pat1b	protein associated with topoisomerase II homolog 1 (yeast)	protein-coding	0.155000	0.766169	
mm_161415.1	chr15	21111232	21111432	+	1	NA	NA	NA	-120	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.035000	0.477612	
mm_25317.1	chr3	106482534	106482734	+	1	NA	NA	NA	184	NM_001278941	72121	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.090000	0.706468	
mm_168582.1	chr11	72292002	72292202	-	1	NA	NA	NA	-9527	NM_001291153	327959	Mm.291131	NM_001037713	ENSMUSG00000040483	Xaf1	Fbox39	XIAP associated factor 1	protein-coding	0.045000	0.532338	-33(TTCTATAAAAGT,-,0.00)
mm_64244.1	chr7	141702525	141702725	+	1	NA	NA	NA	12285	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.015000	0.492537	
mm_151749.1	chr19	5085392	5085592	-	1	NA	NA	NA	-15	NM_001001885	381199	Mm.329663	NM_001001885	ENSMUSG00000061451	Tmem151a	AW125688|Gm961|Tmem151	transmembrane protein 151A	protein-coding	0.155000	0.820896	
mm_109320.1	chr12	109561543	109561743	+	1	NA	NA	NA	-2049	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.035000	0.427861	
mm_149942.1	chr19	27312873	27313073	+	1	NA	NA	NA	-9646	NM_183179	240595	Mm.269759	NM_183179	ENSMUSG00000047298	Kcnv2	KV11.1	potassium channel, subfamily V, member 2	protein-coding	0.005000	0.432836	-33(GGCTATAAAAGG,-,0.00)
mm_163709.1	chr13	108498426	108498626	-	1	NA	NA	NA	-155651	NM_011056	238871	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	0.015000	0.482587	
mm_140746.1	chr17	15830967	15831167	-	1	NA	NA	NA	-4481	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.100000	0.691542	
mm_152124.1	chr19	6992482	6992682	-	1	NA	NA	NA	-310	NM_020566	57431	Mm.10721	NM_020566	ENSMUSG00000024963	Dnajc4	2010301J22Rik|Hspf2|Mcg18	DnaJ heat shock protein family (Hsp40) member C4	protein-coding	0.055000	0.626866	
mm_16225.1	chr2	173154640	173154840	+	1	NA	NA	NA	1667	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.045000	0.587065	
mm_12680.1	chr2	75832357	75832557	+	1	NA	NA	NA	280	NM_172666	228061	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.130000	0.736318	
mm_72245.1	chr8	75058179	75058379	+	1	NA	NA	NA	24593	NM_011622	21968	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.015000	0.492537	
mm_50427.1	chr6	48842531	48842731	+	1	NA	NA	NA	975	NM_001098271	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.015000	0.562189	
mm_36409.1	chr4	78048802	78049002	-	1	NA	NA	NA	162993	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.303483	
mm_112440.1	chr13	5804447	5804647	+	1	NA	NA	NA	53545	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.015000	0.442786	
mm_89066.1	chr10	82897340	82897540	+	1	NA	NA	NA	30814	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.010000	0.472637	
mm_6955.1	chr1	85986834	85987034	-	1	NA	NA	NA	-25879	NM_001033290	227326	Mm.244158	NM_001033290	ENSMUSG00000049608	Gpr55	CTFL|Gm218|Lpir1	G protein-coupled receptor 55	protein-coding	0.005000	0.412935	-18(TGGTCTAAAAGC,-,0.00)
mm_29748.1	chr3	126998336	126998536	-	1	NA	NA	NA	16	NM_178655	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.025000	0.502488	
mm_132693.1	chr16	43247194	43247394	+	1	NA	NA	NA	10	NM_019778	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.010000	0.412935	-28(GCTTTTATGCCA,+,0.00)
mm_100375.1	chr11	119258854	119259054	+	1	NA	NA	NA	-9009	NM_001159324	14387	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.040000	0.467662	
mm_145850.1	chr18	65453298	65453498	+	1	NA	NA	NA	22401	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.318408	
mm_40299.1	chr5	43662296	43662496	+	1	NA	NA	NA	17	NM_172274	231214	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	0.015000	0.462687	-76(CACTTTAAAAAA,-,0.00),-10(TTTTTTAAACCC,+,0.00)
mm_159616.1	chr4	133518926	133519126	+	1	NA	NA	NA	63	NM_133707	69073	Mm.299081	NM_133707	ENSMUSG00000037600	Kdf1	1810019J16Rik	keratinocyte differentiation factor 1	protein-coding	0.130000	0.781095	
mm_121203.1	chr14	103052384	103052584	+	1	NA	NA	NA	5472	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.462687	
mm_36257.1	chr4	63410616	63410816	-	1	NA	NA	NA	-7271	NM_001045514	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.070000	0.646766	
mm_67796.1	chr7	97737925	97738125	-	1	NA	NA	NA	222	NM_175105	66333	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.095000	0.736318	
mm_85912.1	chr9	111057329	111057529	-	1	NA	NA	NA	89	NM_001302376	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.020000	0.487562	
mm_57368.1	chr6	124779543	124779743	-	1	NA	NA	NA	84	NM_001302555	16977	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	0.040000	0.532338	
mm_129975.1	chr15	85821393	85821593	-	1	NA	NA	NA	240	NM_011105	18766	Mm.89965	NM_011105	ENSMUSG00000052496	Pkdrej	-	polycystin (PKD) family receptor for egg jelly	protein-coding	0.095000	0.686567	
mm_45970.1	chr5	90468578	90468778	-	1	NA	NA	NA	7808	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.005000	0.497512	
mm_50178.1	chr6	41581988	41582188	+	1	NA	NA	NA	-23394	NM_001146351	13848	Mm.271976	NM_007680	ENSMUSG00000029869	Ephb6	Cekl|Mep	Eph receptor B6	protein-coding	0.000000	0.273632	
mm_160091.1	chr7	16815801	16816001	+	1	NA	NA	NA	12	NM_001039878	97387	Mm.21612	NM_133789	ENSMUSG00000030374	Strn4	C80611|ZIN|zinedin	striatin, calmodulin binding protein 4	protein-coding	0.010000	0.462687	
mm_136436.1	chr16	94371740	94371940	-	1	NA	NA	NA	-825	NM_001159617	56176	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0.025000	0.482587	-35(AGCTTTAAAAGG,-,0.00),-34(GCTTTAAAAGGC,+,0.00)
mm_4619.1	chr1	178798358	178798558	+	1	NA	NA	NA	269333	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.020000	0.611940	
mm_42559.1	chr5	117133508	117133708	+	1	NA	NA	NA	20	NM_183306	330177	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.030000	0.587065	46(CCTCATAAGGAC,+,0.00)
mm_160425.1	chr8	86651695	86651895	+	1	NA	NA	NA	226	NM_001168591	66887	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding	0.010000	0.402985	
mm_61610.1	chr7	80039950	80040150	+	1	NA	NA	NA	13822	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.015000	0.477612	
mm_90484.1	chr10	127901870	127902070	+	1	NA	NA	NA	3435	NM_027301	70061	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	0.015000	0.552239	
mm_29098.1	chr3	104804544	104804744	-	1	NA	NA	NA	13661	NM_008619	17454	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0.040000	0.582090	
mm_137652.1	chr17	28558677	28558877	+	1	NA	NA	NA	-276	NR_105935	102465585		NR_105935	ENSMUSG00000099152	Mir6969	Gm27305|mmu-mir-6969	microRNA 6969	ncRNA	0.010000	0.557214	
mm_160373.1	chr8	36457541	36457741	+	1	NA	NA	NA	-31550	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding	0.040000	0.592040	
mm_104189.1	chr11	87825681	87825881	-	1	NA	NA	NA	333	NM_080420	76113	Mm.41236	NM_080420	ENSMUSG00000009356	Lpo	5830499B15Rik	lactoperoxidase	protein-coding	0.025000	0.467662	-32(GTATATAAAAGA,-,0.00)
mm_134432.1	chr16	17928076	17928276	-	1	NA	NA	NA	43	NM_153150	13358	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0.125000	0.746269	
mm_134042.1	chr16	5195510	5195710	-	1	NA	NA	NA	8402	NM_013796	27426	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	0.025000	0.567164	
mm_67684.1	chr7	89338652	89338852	-	1	NA	NA	NA	35	NM_028343	72759	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.165000	0.756219	
mm_26294.1	chr3	142507620	142507820	+	1	NA	NA	NA	10786	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.010000	0.422886	
mm_79824.1	chr9	64485871	64486071	+	1	NA	NA	NA	100345	NM_001134399	214058	Mm.127721	NM_172522	ENSMUSG00000036466	Megf11	2410080H04Rik|D130061K05	multiple EGF-like-domains 11	protein-coding	0.015000	0.417910	
mm_12974.1	chr2	90773471	90773671	+	1	NA	NA	NA	-9173	NM_178755	271813	Mm.61146	NM_178755	ENSMUSG00000040812	Agbl2	4930524K04|A430081C19Rik|CCP2	ATP/GTP binding protein-like 2	protein-coding	0.000000	0.338308	
mm_84630.1	chr9	70835082	70835282	-	1	NA	NA	NA	99626	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.015000	0.537313	
mm_64407.1	chr7	142511388	142511588	+	1	NA	NA	NA	-4717	NR_033261	677289	Mm.350054	NR_033261	ENSMUSG00000043795	Prr33	ENSMUSG00000043795|Gm14492|OTTMUSG00000016823	proline rich 33	ncRNA	0.040000	0.597015	
mm_30875.1	chr4	32238787	32238987	+	1	NA	NA	NA	-178548	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.155000	0.810945	
mm_14393.1	chr2	129800654	129800854	+	1	NA	NA	NA	237	NM_001038635	67333	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	0.120000	0.711443	
mm_67146.1	chr7	73466003	73466203	-	1	NA	NA	NA	75643	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.000000	0.378109	
mm_20506.1	chr2	130563622	130563822	-	1	NA	NA	NA	27	NR_040348	321014	Mm.442588	NR_040348	ENSMUSG00000060029	4930473A02Rik	-	RIKEN cDNA 4930473A02 gene	ncRNA	0.110000	0.706468	
mm_18570.1	chr2	65458652	65458852	-	1	NA	NA	NA	-94352	NR_105755	102466151		NR_105755	ENSMUSG00000099184	Mir6337	Gm27877|mmu-mir-6337	microRNA 6337	ncRNA	0.010000	0.363184	
mm_102827.1	chr11	69070641	69070841	-	1	NA	NA	NA	-68	NM_025838	66910	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	0.095000	0.626866	
mm_165532.1	chr2	180025162	180025362	+	1	NA	NA	NA	275	NM_177727	241846	Mm.21577	NM_177727	ENSMUSG00000039108	Lsm14b	9430078B04|BC040823	LSM family member 14B	protein-coding	0.125000	0.701493	
mm_103216.1	chr11	70654986	70655186	-	1	NA	NA	NA	-436	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.125000	0.716418	
mm_47781.1	chr5	131965991	131966191	-	1	NA	NA	NA	85822	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.005000	0.338308	
mm_53647.1	chr6	140642116	140642316	+	1	NA	NA	NA	15331	NM_001309436	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.010000	0.492537	
mm_135100.1	chr16	35363767	35363967	-	1	NA	NA	NA	51	NM_133704	317717	Mm.259164	NM_133704	ENSMUSG00000034473	Sec22a	1810005C06Rik|Sec22l2	SEC22 homolog A, vesicle trafficking protein	protein-coding	0.115000	0.716418	
mm_121133.1	chr14	101883942	101884142	+	1	NA	NA	NA	43419	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.010000	0.512438	
mm_95226.1	chr11	44518427	44518627	+	1	NA	NA	NA	-437	NM_028862	74315	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.030000	0.422886	
mm_86129.1	chr9	116175624	116175824	-	1	NA	NA	NA	-361	NM_009371	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.015000	0.422886	
mm_25566.1	chr3	116594895	116595095	+	1	NA	NA	NA	37	NM_001289571	72776	Mm.440836	NM_028349	ENSMUSG00000027959	Sass6	2810453L12Rik	SAS-6 centriolar assembly protein	protein-coding	0.095000	0.626866	
mm_16865.1	chr2	11777476	11777676	-	1	NA	NA	NA	-49	NM_015792	50755	Mm.24088	NM_015792	ENSMUSG00000058594	Fbxo18	AU015756|Fbh1|Fbx18	F-box protein 18	protein-coding	0.100000	0.646766	
mm_111949.1	chr12	109073329	109073529	-	1	NA	NA	NA	-5212	NM_001163175	380785	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0.065000	0.547264	
mm_47112.1	chr5	119570638	119570838	-	1	NA	NA	NA	9620	NR_045702	100993	Mm.381453	NR_045702	ENSMUSG00000087516	AW549542	-	expressed sequence AW549542	ncRNA	0.000000	0.363184	42(CCTTAAAGATCC,+,0.00)
mm_132645.1	chr16	40908087	40908287	+	1	NA	NA	NA	-624639	NM_001347236	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.005000	0.313433	
mm_115182.1	chr13	108449628	108449828	+	1	NA	NA	NA	133391	NM_178683	218581	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.000000	0.368159	
mm_4036.1	chr1	165774228	165774428	+	1	NA	NA	NA	10548	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.035000	0.601990	
mm_2125.1	chr1	87908949	87909149	+	1	NA	NA	NA	-54750	NR_136921	100503175	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.000000	0.472637	
mm_122664.1	chr14	51913474	51913674	-	1	NA	NA	NA	-86	NM_013864	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.035000	0.621891	
mm_17069.1	chr2	22744675	22744875	-	1	NA	NA	NA	-29552	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.085000	0.661692	-76(ACCTTTAAGAGG,-,0.00),-75(CCTTTAAGAGGT,+,0.00)
mm_50952.1	chr6	58831380	58831580	+	1	NA	NA	NA	-2220	NM_028705	73998	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0.120000	0.736318	
mm_123514.1	chr14	66258100	66258300	-	1	NA	NA	NA	22852	NM_172498	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.000000	0.353234	
mm_163414.1	chr12	78980437	78980637	-	1	NA	NA	NA	2941	NM_001170401	268567	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.010000	0.542289	
mm_141069.1	chr17	25832773	25832973	-	1	NA	NA	NA	488	NM_019719	56424	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	0.140000	0.736318	
mm_5397.1	chr1	33669634	33669834	-	1	NA	NA	NA	60	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	0.060000	0.601990	
mm_130726.1	chr15	101215585	101215785	-	1	NA	NA	NA	-5562	NR_045996	105968	Mm.120798	NR_045996		AU021063	-	expressed sequence AU021063	ncRNA	0.020000	0.388060	
mm_119763.1	chr14	54172011	54172211	+	1	NA	NA	NA	81818	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.432836	
mm_105018.1	chr11	100440922	100441122	-	1	NA	NA	NA	67	NM_026561	68106	Mm.28738	NM_026561	ENSMUSG00000017176	Nt5c3b	2610037D24Rik|AI841843|C330027I04Rik|Nt5c3l	5'-nucleotidase, cytosolic IIIB	protein-coding	0.115000	0.716418	
mm_20423.1	chr2	129303701	129303901	-	1	NA	NA	NA	6171	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.005000	0.358209	-21(GTTTTTAAAGAC,+,0.00),5(CCTTATAAGTAG,+,0.00)
mm_136415.1	chr16	93914246	93914446	-	1	NA	NA	NA	15221	NM_001165925	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.015000	0.487562	-39(GTCTCTAAAGGG,-,0.00)
mm_40629.1	chr5	64822045	64822245	+	1	NA	NA	NA	18622	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.060000	0.636816	
mm_93189.1	chr10	93891027	93891227	-	1	NA	NA	NA	75	NM_019648	56307	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	0.005000	0.487562	
mm_35083.1	chr4	7455143	7455343	-	1	NA	NA	NA	-105445	NR_040645	71510	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0.030000	0.457711	13(CCTTATCAAGAC,+,0.00)
mm_38340.1	chr4	137766339	137766539	-	1	NA	NA	NA	36	NM_001287172	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.010000	0.557214	
mm_133742.1	chr16	94010839	94011039	+	1	NA	NA	NA	-2102	NM_019500	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.010000	0.527363	
mm_101805.1	chr11	46312211	46312411	-	1	NA	NA	NA	47	NM_001252460	76884	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0.145000	0.805970	
mm_83812.1	chr9	53594630	53594830	-	1	NA	NA	NA	15620	NM_144784	110446	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	0.005000	0.422886	-70(GTTTTTAAAAGG,-,0.00),-69(TTTTTAAAAGGG,+,0.00),55(GCTTTTATACTT,+,0.00)
mm_116347.1	chr13	38658915	38659115	-	1	NA	NA	NA	13	NM_025380	66143	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	0.070000	0.646766	
mm_137699.1	chr17	29081482	29081682	+	1	NA	NA	NA	-2456	NR_036469	100504267	Mm.438550	NR_036469	ENSMUSG00000085912	Trp53cor1	Gm16197|OTTMUSG00000031656|linc-p21|lincRNA-p21	tumor protein p53 pathway corepressor 1	ncRNA	0.050000	0.597015	
mm_124888.1	chr15	10313923	10314123	+	1	NA	NA	NA	20372	NM_001253782	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.015000	0.452736	
mm_67034.1	chr7	66689519	66689719	-	1	NA	NA	NA	-58	NR_003961	117589	Mm.34785	NM_080443	ENSMUSG00000030509	Asb7	AI449039|Asb-7|D030055C23Rik	ankyrin repeat and SOCS box-containing 7	protein-coding	0.040000	0.656716	
mm_22761.1	chr3	19992531	19992731	+	1	NA	NA	NA	35577	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.020000	0.402985	
mm_89847.1	chr10	106949105	106949305	+	1	NA	NA	NA	174459	NM_001142804	380660	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding	0.000000	0.398010	
mm_169944.1	chr1	66948860	66949060	-	1	NA	NA	NA	-3904	NM_021285	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.050000	0.557214	
mm_106492.1	chr11	120237523	120237723	-	1	NA	NA	NA	4676	NM_198423	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.080000	0.587065	
mm_170989.1	chr2	7414995	7415195	+	1	NA	NA	NA	-18897	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.015000	0.517413	
mm_132359.1	chr16	34660655	34660855	+	1	NA	NA	NA	9544	NM_030744	76378	Mm.23515	NM_030744	ENSMUSG00000022832	Ropn1	1700008N21Rik|ODF6|RHPNAP1|Rppn|ropporin	ropporin, rhophilin associated protein 1	protein-coding	0.000000	0.383085	
mm_81678.1	chr9	111058012	111058212	+	1	NA	NA	NA	-594	NM_001302376	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.010000	0.557214	
mm_110319.1	chr12	34714219	34714419	-	1	NA	NA	NA	-185430	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.045000	0.447761	
mm_112754.1	chr13	19342058	19342258	+	1	NA	NA	NA	53655	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.417910	
mm_152123.1	chr19	6992401	6992601	-	1	NA	NA	NA	-229	NM_020566	57431	Mm.10721	NM_020566	ENSMUSG00000024963	Dnajc4	2010301J22Rik|Hspf2|Mcg18	DnaJ heat shock protein family (Hsp40) member C4	protein-coding	0.040000	0.636816	
mm_171902.1	chr5	42136056	42136256	+	1	NA	NA	NA	68196	NR_131130	433882	Mm.319353	NR_131130	ENSMUSG00000067285	Gm16223	EG433882|OTTMUSG00000031875	predicted gene 16223	ncRNA	0.040000	0.407960	-18(CACTTTAAAAAA,-,0.00)
mm_27272.1	chr3	40522814	40523014	-	1	NA	NA	NA	-2	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.040000	0.477612	
mm_77103.1	chr8	111031630	111031830	-	1	NA	NA	NA	21	NM_001190786	234733	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	0.065000	0.631841	
mm_55607.1	chr6	71881070	71881270	-	1	NA	NA	NA	27592	NM_027275	69956	Mm.30256	NM_027275	ENSMUSG00000063884	Ptcd3	2610034F17Rik|2810422B04Rik|AA589622|AU045708|MRP-S39	pentatricopeptide repeat domain 3	protein-coding	0.010000	0.457711	
mm_95696.1	chr11	54370506	54370706	+	1	NA	NA	NA	-46	NM_029105	74847	Mm.486538	NM_029105	ENSMUSG00000020332	Meikin	4930404A10Rik	meiotic kinetochore factor	protein-coding	0.035000	0.587065	
mm_84041.1	chr9	57792098	57792298	-	1	NA	NA	NA	-26338	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.010000	0.537313	
mm_3.1	chr1	4522740	4522940	+	1	NA	NA	NA	-25486	NM_001289465	20671	Mm.279103	NM_011441	ENSMUSG00000025902	Sox17	-	SRY (sex determining region Y)-box 17	protein-coding	0.030000	0.452736	
mm_14056.1	chr2	122609614	122609814	+	1	NA	NA	NA	1563	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.010000	0.562189	13(TCCTCTAAAGGG,-,0.00)
mm_108038.1	chr12	73901222	73901422	+	1	NA	NA	NA	-2	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.020000	0.412935	
mm_56022.1	chr6	86585117	86585317	-	1	NA	NA	NA	-42957	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.045000	0.611940	
mm_146277.1	chr18	77882406	77882606	+	1	NA	NA	NA	-55961	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.005000	0.537313	
mm_101428.1	chr11	29879671	29879871	-	1	NA	NA	NA	-54103	NM_176829	216622	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0.005000	0.432836	-28(CACTATAAAAAA,-,0.00)
mm_93290.1	chr10	96332864	96333064	-	1	NA	NA	NA	106757	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.020000	0.482587	
mm_43085.1	chr5	124450079	124450279	+	1	NA	NA	NA	3475	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.025000	0.442786	-72(TACTTTAAAAAG,-,0.00)
mm_166900.1	chr7	28442642	28442842	-	1	NA	NA	NA	1805	NM_001039192	63986	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.005000	0.412935	
mm_51054.1	chr6	65631409	65631609	+	1	NA	NA	NA	-40102	NM_172399	68169	Mm.52392	NM_172399	ENSMUSG00000049001	Ndnf	A930038C07Rik|epidermacan	neuron-derived neurotrophic factor	protein-coding	0.005000	0.417910	
mm_146897.1	chr18	30146451	30146651	-	1	NA	NA	NA	-126345	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding	0.020000	0.442786	
mm_135887.1	chr16	64851340	64851540	-	1	NA	NA	NA	283	NM_001347245	72020	Mm.25960	NM_028059	ENSMUSG00000047141	Zfp654	1600021C16Rik|1810008K20Rik|433036|Gm5488|Znf654	zinc finger protein 654	protein-coding	0.125000	0.746269	
mm_33684.1	chr4	133370109	133370309	+	1	NA	NA	NA	433	NR_039582	100628620		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	0.035000	0.577114	
mm_89861.1	chr10	108162057	108162257	+	1	NA	NA	NA	-243	NM_027892	17931	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.145000	0.751244	
mm_62643.1	chr7	107665600	107665800	+	1	NA	NA	NA	58856	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.010000	0.601990	
mm_117567.1	chr13	85287937	85288137	-	1	NA	NA	NA	1449	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.020000	0.422886	-34(CACTATAAAGGC,-,0.00)
mm_109710.1	chr12	113430134	113430334	+	1	NA	NA	NA	-59331	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.517413	
mm_5164.1	chr1	10038038	10038238	-	1	NA	NA	NA	21	NR_102282	26754	Mm.402384	NM_013715	ENSMUSG00000025917	Cops5	AI303502|CSN5|Jab1|Mov34|Sgn5	COP9 signalosome subunit 5	protein-coding	0.095000	0.601990	
mm_122081.1	chr14	30607724	30607924	-	1	NA	NA	NA	2486	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.015000	0.631841	
mm_33599.1	chr4	132568486	132568686	+	1	NA	NA	NA	4519	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.010000	0.497512	
mm_115224.1	chr13	109757096	109757296	+	1	NA	NA	NA	-146613	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.010000	0.507463	
mm_132680.1	chr16	42930860	42931060	+	1	NA	NA	NA	-18890	NR_040402	100503040	Mm.490721	NR_040402		Gm19522	-	predicted gene, 19522	ncRNA	0.000000	0.298507	
mm_127574.1	chr15	102279647	102279847	+	1	NA	NA	NA	291	NM_134100	106073	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0.100000	0.661692	
mm_4932.1	chr1	191097777	191097977	+	1	NA	NA	NA	-537	NM_030060	381319	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.090000	0.721393	
mm_97308.1	chr11	76679802	76680002	+	1	NA	NA	NA	29	NM_177709	237858	Mm.127006	NM_177709	ENSMUSG00000046275	Tusc5	C130069F04Rik|DSPB1|Lost1	tumor suppressor candidate 5	protein-coding	0.045000	0.592040	
mm_91390.1	chr10	30655747	30655947	-	1	NA	NA	NA	20	NM_001111267	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.015000	0.507463	
mm_64417.1	chr7	142555514	142555714	+	1	NA	NA	NA	2984	NR_002452	330677	Mm.265130	NR_002452	ENSMUSG00000087090	Nctc1	9530074L01|Rhit1	non-coding transcript 1	ncRNA	0.005000	0.557214	
mm_45764.1	chr5	86916882	86917082	-	1	NA	NA	NA	9521	NM_152811	71773	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0.000000	0.398010	
mm_127129.1	chr15	98156226	98156426	+	1	NA	NA	NA	9252	NM_001170711	78541	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0.005000	0.437811	
mm_164016.1	chr14	71263672	71263872	-	1	NA	NA	NA	12499	NR_046076	100043132	Mm.399336	NR_046075		Gm4251	-	predicted gene 4251	ncRNA	0.020000	0.452736	
mm_103347.1	chr11	74756628	74756828	-	1	NA	NA	NA	-14135	NM_026197	67493	Mm.45748	NM_026197	ENSMUSG00000010554	Mettl16	2610100D03Rik|2810013M15Rik|A830095F14Rik|AI846133|Mett10d	methyltransferase like 16	protein-coding	0.005000	0.527363	
mm_170673.1	chr2	121414075	121414275	+	1	NA	NA	NA	273	NM_007952	14827	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	0.135000	0.696517	
mm_125029.1	chr15	25753105	25753305	+	1	NA	NA	NA	-90093	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.030000	0.552239	-100(AGCCTTAAGAGG,-,0.00),-99(GCCTTAAGAGGC,+,0.00),-35(CAGCATAAAAGG,-,0.00)
mm_111068.1	chr12	80115603	80115803	-	1	NA	NA	NA	-2690	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.125000	0.746269	
mm_66400.1	chr7	44359683	44359883	-	1	NA	NA	NA	15247	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.010000	0.452736	
mm_110318.1	chr12	34639418	34639618	-	1	NA	NA	NA	-110629	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.010000	0.383085	
mm_82534.1	chr9	20746171	20746371	-	1	NA	NA	NA	-18057	NM_173777	244723	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.145000	0.800995	
mm_70355.1	chr8	5639406	5639606	+	1	NA	NA	NA	-534219	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.055000	0.492537	
mm_159800.1	chr5	112475404	112475604	-	1	NA	NA	NA	26078	NM_001177504	625464	Mm.389676	NM_001177504	ENSMUSG00000072722	Gm6588	EG625464	predicted gene 6588	protein-coding	0.020000	0.606965	
mm_160919.1	chr11	84019162	84019362	+	1	NA	NA	NA	49095	NM_019819	56405	Mm.240885	NM_019819	ENSMUSG00000018648	Dusp14	1110014C10Rik|2310042C07Rik|D11Ertd395e|MKP-L|Mkp6	dual specificity phosphatase 14	protein-coding	0.015000	0.417910	
mm_100960.1	chr11	6635481	6635681	-	1	NA	NA	NA	3068	NM_011709	22373	Mm.268094	NM_011709	ENSMUSG00000000381	Wap	-	whey acidic protein	protein-coding	0.010000	0.512438	
mm_40074.1	chr5	34336833	34337033	+	1	NA	NA	NA	1	NM_001304270	19822	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0.110000	0.676617	
mm_84574.1	chr9	69034245	69034445	-	1	NA	NA	NA	-255496	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.015000	0.522388	
mm_170074.1	chr17	33523927	33524127	+	1	NA	NA	NA	-58	NR_137628	224697	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	0.075000	0.616915	
mm_41934.1	chr5	105700788	105700988	+	1	NA	NA	NA	78	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.025000	0.542289	-14(GGCTTGAAAAAG,-,0.00),77(CCCTTTATGTGG,+,0.00)
mm_98885.1	chr11	97825470	97825670	+	1	NA	NA	NA	-15210	NM_001080935	68127	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0.035000	0.577114	-40(GTCTCTATATGG,-,0.00)
mm_3006.1	chr1	133323865	133324065	+	1	NA	NA	NA	-3247	NM_178260	280287	Mm.458301	NM_178260	ENSMUSG00000098306	Kiss1	kisspeptin|metastatin	KiSS-1 metastasis-suppressor	protein-coding	0.015000	0.592040	-33(CTTCATAAAAGG,-,0.00)
mm_142866.1	chr17	51814375	51814575	-	1	NA	NA	NA	-2421	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.015000	0.432836	83(CGCTTTAAAGAG,-,0.00),84(GCTTTAAAGAGC,+,0.00)
mm_136385.1	chr16	93127665	93127865	-	1	NA	NA	NA	225424	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.005000	0.348259	
mm_104276.1	chr11	89403431	89403631	-	1	NA	NA	NA	15417	NM_172534	382543	Mm.60997	NM_172534	ENSMUSG00000047773	Ankfn1	4932411E22Rik|Gm1175|nmf9	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding	0.025000	0.482587	-99(GCTTATATACTC,+,0.00)
mm_126477.1	chr15	81523317	81523517	+	1	NA	NA	NA	57101	NM_019712	56438	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.070000	0.686567	
mm_111478.1	chr12	98683675	98683875	-	1	NA	NA	NA	50870	NM_011877	24000	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0.020000	0.522388	
mm_98535.1	chr11	95009771	95009971	+	1	NA	NA	NA	-8	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.100000	0.681592	
mm_61823.1	chr7	87586430	87586630	+	1	NA	NA	NA	2362	NM_001143834	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0.020000	0.547264	-87(CTCTATAAATAC,-,0.00)
mm_11065.1	chr2	27625098	27625298	+	1	NA	NA	NA	-52003	NM_011305	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.005000	0.522388	
mm_120143.1	chr14	60378233	60378433	+	1	NA	NA	NA	47	NM_001164705	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.160000	0.746269	
mm_145626.1	chr18	61109622	61109822	+	1	NA	NA	NA	4150	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.045000	0.582090	
mm_72248.1	chr8	75060228	75060428	+	1	NA	NA	NA	26642	NM_011622	21968	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.015000	0.547264	
mm_59540.1	chr7	27838449	27838649	+	1	NA	NA	NA	-35	NM_011762	22717	Mm.379046	NM_011762	ENSMUSG00000078779	Zfp59	Mfg-2|Mfg2	zinc finger protein 59	protein-coding	0.065000	0.582090	-32(CCCTTTAAGCGC,+,0.00)
mm_63847.1	chr7	135652433	135652633	+	1	NA	NA	NA	-219	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.020000	0.507463	
mm_82120.1	chr9	123478569	123478769	+	1	NA	NA	NA	-32	NM_013860	29806	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.185000	0.880597	
mm_62325.1	chr7	100472834	100473034	+	1	NA	NA	NA	-57	NM_009464	22229	Mm.6254	NM_009464	ENSMUSG00000032942	Ucp3	AI645527|Slc25a9|UCP-3	uncoupling protein 3 (mitochondrial, proton carrier)	protein-coding	0.025000	0.577114	
mm_94146.1	chr10	128742616	128742816	-	1	NA	NA	NA	1340	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.005000	0.517413	
mm_144449.1	chr18	23217081	23217281	+	1	NA	NA	NA	-415	NR_110491	665797	Mm.328158	NR_110491		Gm7788	EG665797	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.005000	0.512438	
mm_37285.1	chr4	119107888	119108088	-	1	NA	NA	NA	-757	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.010000	0.522388	
mm_13249.1	chr2	98663664	98663864	+	1	NA	NA	NA	1196107	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.015000	0.348259	
mm_43691.1	chr5	139150105	139150305	+	1	NA	NA	NA	-18	NM_001081265	433956	Mm.5547	NM_001081265	ENSMUSG00000025857	Dnaaf5	BC053401|C76907|Heatr2	dynein, axonemal assembly factor 5	protein-coding	0.105000	0.686567	
mm_149646.1	chr19	17517173	17517373	+	1	NA	NA	NA	123230	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.010000	0.507463	-33(GAACATAAAAGG,-,0.00)
mm_31212.1	chr4	43957607	43957807	+	1	NA	NA	NA	5	NM_027450	384009	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0.095000	0.746269	-91(TGCCTTATAAGG,-,0.00),-89(CCTTATAAGGCG,+,0.00)
mm_143966.1	chr17	87264152	87264352	-	1	NA	NA	NA	1695	NM_176808	193813	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	0.020000	0.502488	
mm_105316.1	chr11	102887693	102887893	-	1	NA	NA	NA	2624	NM_025766	66784	Mm.483216	NM_025766	ENSMUSG00000075510	Fam187a	4933439F11Rik	family with sequence similarity 187, member A	protein-coding	0.015000	0.527363	
mm_37262.1	chr4	118437268	118437468	-	1	NA	NA	NA	-25	NM_023223	107995	Mm.261764	NM_023223	ENSMUSG00000006398	Cdc20	2310042N09Rik|C87100|p55CDC	cell division cycle 20	protein-coding	0.080000	0.547264	
mm_162827.1	chr10	81343151	81343351	-	1	NA	NA	NA	15	NM_148951	209047	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0.170000	0.791045	
mm_112097.1	chr12	112785092	112785292	-	1	NA	NA	NA	-23783	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.010000	0.517413	
mm_162972.1	chr11	12035899	12036099	-	1	NA	NA	NA	1421	NM_010345	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.025000	0.482587	
mm_133292.1	chr16	77497434	77497634	+	1	NA	NA	NA	-101402	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.005000	0.308458	
mm_1296.1	chr1	64532703	64532903	+	1	NA	NA	NA	-1	NM_133828	12912	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.120000	0.741294	
mm_129758.1	chr15	82380121	82380321	-	1	NA	NA	NA	39	NM_019823	56448	Mm.474216	NM_019823	ENSMUSG00000061740	Cyp2d22	2D22	cytochrome P450, family 2, subfamily d, polypeptide 22	protein-coding	0.030000	0.631841	
mm_77460.1	chr8	121974031	121974231	-	1	NA	NA	NA	-3893	NR_106096	102466915		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	0.070000	0.651741	
mm_72660.1	chr8	84871972	84872172	+	1	NA	NA	NA	-39	NR_031759	71846	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	0.075000	0.646766	
mm_115006.1	chr13	98316318	98316518	+	1	NA	NA	NA	549	NM_145455	218490	Mm.371688	NM_145455	ENSMUSG00000021660	Btf3	1700054E11Rik	basic transcription factor 3	protein-coding	0.090000	0.691542	
mm_132154.1	chr16	32142723	32142923	+	1	NA	NA	NA	22653	NM_146069	224109	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.010000	0.348259	
mm_157645.1	chrX	57304883	57305083	-	1	NA	NA	NA	33746	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	0.010000	0.507463	
mm_84724.1	chr9	74528511	74528711	-	1	NA	NA	NA	-319826	NR_045284	100503019	Mm.482658	NR_045284	ENSMUSG00000066477	Gm16551	-	predicted gene 16551	ncRNA	0.015000	0.417910	
mm_123637.1	chr14	68581947	68582147	-	1	NA	NA	NA	25	NM_021475	58860	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0.005000	0.437811	
mm_168551.1	chr11	64299042	64299242	+	1	NA	NA	NA	-136190	NM_178870	15478	Mm.340214	NM_178870	ENSMUSG00000047759	Hs3st3a1	3Ost3a|Hs3st3a	heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1	protein-coding	0.025000	0.527363	
mm_65532.1	chr7	25803341	25803541	-	1	NA	NA	NA	13089	NM_028775	74134	Mm.275188	NM_028775	ENSMUSG00000040703	Cyp2s1	1200011C15Rik|AU041727|C79779	cytochrome P450, family 2, subfamily s, polypeptide 1	protein-coding	0.015000	0.522388	
mm_127838.1	chr15	6874140	6874340	-	1	NA	NA	NA	73	NM_011019	18414	Mm.10760	NM_011019	ENSMUSG00000022146	Osmr	OSMRB	oncostatin M receptor	protein-coding	0.120000	0.716418	
mm_156100.1	chrX	112600630	112600830	+	1	NA	NA	NA	204	NM_177747	245595	Mm.259846	NM_177747	ENSMUSG00000025529	Zfp711	2810409C01Rik|A230078I01Rik|Znf711	zinc finger protein 711	protein-coding	0.110000	0.661692	
mm_144174.1	chr18	6733796	6733996	+	1	NA	NA	NA	-31271	NM_181070	19330	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.010000	0.442786	
mm_23026.1	chr3	34643018	34643218	+	1	NA	NA	NA	4654	NR_035433	100316679		NR_035433	ENSMUSG00000104797	Mir1897	Mirn1897|mmu-mir-1897	microRNA 1897	ncRNA	0.020000	0.388060	
mm_99608.1	chr11	104577277	104577477	+	1	NA	NA	NA	-15179	NR_130177	100415912	Mm.446786	NR_130177		Gm11665	Gm11664|OTTMUSG00000003182|OTTMUSG00000003183	predicted gene 11665	ncRNA	0.010000	0.562189	-98(CCTTTTATAGTC,+,0.00)
mm_61874.1	chr7	89426825	89427025	+	1	NA	NA	NA	619	NR_102276	101521	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	0.010000	0.298507	
mm_52329.1	chr6	108876190	108876390	+	1	NA	NA	NA	47649	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.010000	0.477612	-33(AGCTATATAAGC,-,0.00)
mm_17521.1	chr2	29252730	29252930	-	1	NA	NA	NA	163	NR_029460	76220	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0.075000	0.691542	
mm_66435.1	chr7	44813231	44813431	-	1	NA	NA	NA	2327	NM_030693	107503	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	0.010000	0.641791	
mm_165315.1	chr2	103411650	103411850	+	1	NA	NA	NA	-348	NM_001145813	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.025000	0.582090	
mm_59529.1	chr7	27653833	27654033	+	1	NA	NA	NA	9	NM_028417	73032	Mm.44095	NM_028417	ENSMUSG00000007944	Ttc9b	2900074C18Rik	tetratricopeptide repeat domain 9B	protein-coding	0.125000	0.766169	
mm_65088.1	chr7	19261945	19262145	-	1	NA	NA	NA	9809	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.005000	0.601990	
mm_4852.1	chr1	187215643	187215843	+	1	NA	NA	NA	232	NM_026367	67769	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding	0.115000	0.656716	
mm_14072.1	chr2	122765291	122765491	+	1	NA	NA	NA	32	NM_001162503	59010	Mm.28986	NM_021507	ENSMUSG00000005803	Sqrdl	0610039J17Rik|4930557M22Rik|SQOR	sulfide quinone reductase-like (yeast)	protein-coding	0.095000	0.721393	
mm_69460.1	chr7	133123314	133123514	-	1	NA	NA	NA	69	NM_009980	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.060000	0.636816	
mm_7070.1	chr1	87853060	87853260	-	1	NA	NA	NA	-127	NM_177646	227333	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0.070000	0.661692	
mm_169999.1	chr1	71649116	71649316	-	1	NA	NA	NA	4018	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.025000	0.527363	
mm_122933.1	chr14	54962627	54962827	-	1	NA	NA	NA	3880	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.025000	0.507463	
mm_103401.1	chr11	75438835	75439035	-	1	NA	NA	NA	566	NM_008878	18816	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	0.005000	0.542289	
mm_80518.1	chr9	80066897	80067097	+	1	NA	NA	NA	94	NM_146003	215351	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.140000	0.781095	
mm_74941.1	chr8	25840351	25840551	-	1	NA	NA	NA	6	NM_001286207	23808	Mm.27706	NM_011791	ENSMUSG00000031575	Ash2l	-	ash2 (absent, small, or homeotic)-like (Drosophila)	protein-coding	0.120000	0.736318	
mm_49800.1	chr6	35996901	35997101	+	1	NA	NA	NA	-391083	NM_203491	243764	Mm.448632	NM_203491	ENSMUSG00000045613	Chrm2	AChR-M2|Chrm-2|M2	cholinergic receptor, muscarinic 2, cardiac	protein-coding	0.000000	0.497512	
mm_151810.1	chr19	5468397	5468597	-	1	NA	NA	NA	10	NM_009985	13041	Mm.113590	NM_009985	ENSMUSG00000024910	Ctsw	lymphopain	cathepsin W	protein-coding	0.015000	0.572139	
mm_156347.1	chrX	139179145	139179345	+	1	NA	NA	NA	-30799	NM_175541	245631	Mm.131001	NM_175541	ENSMUSG00000042515	Mum1l1	9430086K21Rik	melanoma associated antigen (mutated) 1-like 1	protein-coding	0.035000	0.482587	
mm_137417.1	chr17	26123473	26123673	+	1	NA	NA	NA	70	NM_024227	68611	Mm.273102	NM_024227	ENSMUSG00000024181	Mrpl28	1110015G04Rik|L28mt|MAAT1|MRP-L28|p15	mitochondrial ribosomal protein L28	protein-coding	0.120000	0.656716	
mm_46880.1	chr5	113844165	113844365	-	1	NA	NA	NA	-13764	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.050000	0.587065	
mm_13229.1	chr2	97502414	97502614	+	1	NA	NA	NA	34857	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.000000	0.323383	
mm_47120.1	chr5	119671404	119671604	-	1	NA	NA	NA	271	NM_011535	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.040000	0.462687	55(TCCTTTAAAAAA,-,0.00)
mm_55713.1	chr6	73060199	73060399	-	1	NA	NA	NA	-101551	NM_001190327	19240	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.010000	0.467662	
mm_91452.1	chr10	34019374	34019574	-	1	NA	NA	NA	142	NM_025614	66521	Mm.28528	NM_025614	ENSMUSG00000019782	Rwdd1	0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1	RWD domain containing 1	protein-coding	0.135000	0.701493	
mm_27003.1	chr3	25847191	25847391	-	1	NA	NA	NA	306016	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.447761	
mm_132583.1	chr16	38362071	38362271	+	1	NA	NA	NA	-19	NM_001081984	64082	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.035000	0.552239	
mm_123316.1	chr14	62481038	62481238	-	1	NA	NA	NA	-24849	NM_172810	239134	Mm.236557	NM_172810	ENSMUSG00000021933	Gucy1b2	B930025B03|GC-SB2	guanylate cyclase 1, soluble, beta 2	protein-coding	0.050000	0.616915	
mm_136335.1	chr16	92466161	92466361	-	1	NA	NA	NA	-92	NM_001081549	54720	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.125000	0.666667	-26(GACCTTAAAGGG,-,0.00),-24(CCTTAAAGGGAA,+,0.00)
mm_101362.1	chr11	23741290	23741490	-	1	NA	NA	NA	29580	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.030000	0.492537	
mm_150909.1	chr19	46003408	46003608	+	1	NA	NA	NA	30	NM_176785	20170	Mm.101110	NM_176785	ENSMUSG00000074811	Hps6	5330434M19Rik|BLOC2|ru	Hermansky-Pudlak syndrome 6	protein-coding	0.095000	0.716418	
mm_62409.1	chr7	101214126	101214326	+	1	NA	NA	NA	87862	NM_001111111	73683	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.005000	0.368159	
mm_93326.1	chr10	99241855	99242055	-	1	NA	NA	NA	-21276	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.025000	0.487562	39(GCTCTTATAGCA,+,0.00)
mm_21375.1	chr2	157346555	157346755	-	1	NA	NA	NA	0	NM_010285	14601	Mm.389327	NM_010285	ENSMUSG00000027643	Ghrh	GRF|Ghrf	growth hormone releasing hormone	protein-coding	0.025000	0.572139	
mm_135086.1	chr16	34514108	34514308	-	1	NA	NA	NA	-181	NM_177357	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.020000	0.597015	
mm_68796.1	chr7	124629023	124629223	-	1	NA	NA	NA	79812	NR_045907	73076	Mm.417827	NR_045907	ENSMUSG00000086254	3100003L05Rik	-	RIKEN cDNA 3100003L05 gene	ncRNA	0.005000	0.487562	-34(GCTTTAAGATCC,+,0.00)
mm_161736.1	chr17	31583584	31583784	+	1	NA	NA	NA	18911	NM_016670	18771	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.030000	0.452736	
mm_140873.1	chr17	23802736	23802936	-	1	NA	NA	NA	-351	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.065000	0.552239	
mm_14472.1	chr2	131491812	131492012	+	1	NA	NA	NA	50	NM_001177838	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.130000	0.820896	
mm_148872.1	chr19	6497661	6497861	+	1	NA	NA	NA	45309	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.085000	0.716418	
mm_165750.1	chr3	108146086	108146286	+	1	NA	NA	NA	-34	NM_010306	14679	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	0.090000	0.636816	
mm_137768.1	chr17	29490687	29490887	+	1	NA	NA	NA	-258	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.135000	0.786070	
mm_20392.1	chr2	129100832	129101032	-	1	NA	NA	NA	-64	NM_009086	20017	Mm.259078	NM_009086	ENSMUSG00000027395	Polr1b	128kDa|D630020H17Rik|RPA116|RPA135|RPA2|Rpo1-2	polymerase (RNA) I polypeptide B	protein-coding	0.050000	0.542289	
mm_54932.1	chr6	48439518	48439718	-	1	NA	NA	NA	5472	NM_001085415	68910	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	0.000000	0.567164	
mm_130071.1	chr15	89355383	89355583	-	1	NA	NA	NA	176	NM_178919	105847	Mm.34511	NM_178919	ENSMUSG00000022614	Lmf2	AI451006|Tmem112b|Tmem153	lipase maturation factor 2	protein-coding	0.075000	0.646766	
mm_123202.1	chr14	59323115	59323315	-	1	NA	NA	NA	18115	NM_001164327	236451	Mm.247736	NM_001164327	ENSMUSG00000091649	Phf11b	EG236451|Gm4902	PHD finger protein 11B	protein-coding	0.010000	0.368159	
mm_90972.1	chr10	13474203	13474403	-	1	NA	NA	NA	93	NM_001195065	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.110000	0.771144	
mm_11988.1	chr2	55437041	55437241	+	1	NA	NA	NA	1171	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.050000	0.616915	
mm_53541.1	chr6	136808204	136808404	+	1	NA	NA	NA	56	NM_177688	232440	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	0.145000	0.706468	
mm_103016.1	chr11	69734798	69734998	-	1	NA	NA	NA	23735	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.005000	0.552239	
mm_162237.1	chrX	154120552	154120752	-	1	NA	NA	NA	33	NM_001201358	667256	Mm.46855	NM_001201358	ENSMUSG00000094577	4921511M17Rik	-	RIKEN cDNA 4921511M17 gene	protein-coding	0.005000	0.412935	
mm_98060.1	chr11	85831666	85831866	+	1	NA	NA	NA	622	NR_077059	69909	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.035000	0.502488	
mm_121152.1	chr14	101933918	101934118	+	1	NA	NA	NA	93395	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.020000	0.373134	-37(AGCTATAAAAAA,-,0.00),8(TTTTTTAAAGGA,+,0.00)
mm_81944.1	chr9	120492510	120492710	+	1	NA	NA	NA	4	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.190000	0.791045	
mm_166625.1	chr6	76381121	76381321	+	1	NA	NA	NA	-861496	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.005000	0.442786	
mm_124181.1	chr14	93877214	93877414	-	1	NA	NA	NA	11574	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.402985	
mm_164428.1	chr16	45382964	45383164	-	1	NA	NA	NA	25989	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.015000	0.447761	
mm_15670.1	chr2	163438396	163438596	+	1	NA	NA	NA	29	NM_144891	228858	Mm.102080	NM_144891	ENSMUSG00000017943	Gdap1l1	Gdap1l	ganglioside-induced differentiation-associated protein 1-like 1	protein-coding	0.060000	0.671642	
mm_130039.1	chr15	88982587	88982787	-	1	NA	NA	NA	-307	NM_031260	83456	Mm.358791	NM_031260	ENSMUSG00000015365	Mov10l1	CHAMP|Csm	Moloney leukemia virus 10-like 1	protein-coding	0.055000	0.557214	
mm_156141.1	chrX	129749681	129749881	+	1	NA	NA	NA	39	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.080000	0.671642	
mm_90605.1	chr10	128322542	128322742	+	1	NA	NA	NA	183	NM_019953	56530	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy FGF signaling regulator 2	protein-coding	0.055000	0.636816	
mm_61680.1	chr7	80993607	80993807	+	1	NA	NA	NA	23	NM_178707	233410	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	8430405N24|A730014M16Rik|Znf592|mKIAA0211	zinc finger protein 592	protein-coding	0.175000	0.845771	
mm_53511.1	chr6	135707317	135707517	+	1	NA	NA	NA	48504	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	0.015000	0.552239	
mm_92497.1	chr10	78351599	78351799	-	1	NA	NA	NA	1	NM_053014	28169	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.045000	0.532338	
mm_6171.1	chr1	65080157	65080357	-	1	NA	NA	NA	2033	NM_144761	12965	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	0.015000	0.412935	
mm_136604.1	chr17	5195619	5195819	+	1	NA	NA	NA	200645	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.010000	0.432836	
mm_152632.1	chr19	12501489	12501689	-	1	NA	NA	NA	407	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.170000	0.781095	
mm_43003.1	chr5	123462390	123462590	+	1	NA	NA	NA	19611	NM_029594	76399	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.005000	0.323383	
mm_125820.1	chr15	74956352	74956552	+	1	NA	NA	NA	1346	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.030000	0.452736	
mm_162724.1	chr10	39533167	39533367	+	1	NA	NA	NA	-79667	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.035000	0.527363	
mm_147207.1	chr18	37935286	37935486	-	1	NA	NA	NA	90	NM_001305980	13367	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0.125000	0.716418	
mm_7123.1	chr1	90822323	90822523	-	1	NA	NA	NA	21548	NM_001243009	12835	Mm.7562	NM_009935	ENSMUSG00000048126	Col6a3	AI507288|Col6a-3	collagen, type VI, alpha 3	protein-coding	0.030000	0.373134	8(TTCTTTTAAAGC,-,0.00),9(TCTTTTAAAGCA,+,0.00),10(CTTTTAAAGCAC,+,0.00)
mm_137887.1	chr17	31678829	31679029	+	1	NA	NA	NA	998	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.005000	0.497512	
mm_43943.1	chr5	145127891	145128091	+	1	NA	NA	NA	12098	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.005000	0.402985	24(GCCTTTTAAAGA,-,0.00),25(CCTTTTAAAGAA,+,0.00)
mm_157657.1	chrX	57338504	57338704	-	1	NA	NA	NA	125	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	0.035000	0.492537	5(GCTCATAAAAGG,-,0.00)
mm_86805.1	chr10	20325287	20325487	+	1	NA	NA	NA	12918	NM_001025393	72567	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0.005000	0.422886	63(TCATTAAAAGGC,+,0.00)
mm_39865.1	chr5	31048932	31049132	+	1	NA	NA	NA	-108	NM_001177622	330064	Mm.205463	NM_177870	ENSMUSG00000006641	Slc5a6	E430023I20	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	protein-coding	0.025000	0.442786	
mm_8898.1	chr1	162937440	162937640	-	1	NA	NA	NA	-315	NM_001178038	226565	Mm.270516	NM_001178038	ENSMUSG00000095576	Fmo6	-	flavin containing monooxygenase 6	protein-coding	0.015000	0.412935	
mm_117814.1	chr13	97781117	97781317	-	1	NA	NA	NA	221217	NR_046157	328314	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.005000	0.487562	
mm_67150.1	chr7	73517428	73517628	-	1	NA	NA	NA	24218	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.005000	0.502488	
mm_169126.1	chr13	54190031	54190231	-	1	NA	NA	NA	-1998	NM_001010973	15466	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	-	histamine receptor H2	protein-coding	0.045000	0.517413	
mm_20510.1	chr2	130638004	130638204	-	1	NA	NA	NA	4740	NM_197945	241638	Mm.440130	NM_197945	ENSMUSG00000037703	Lzts3	Prosapip1	leucine zipper, putative tumor suppressor family member 3	protein-coding	0.075000	0.587065	
mm_30324.1	chr3	151731786	151731986	-	1	NA	NA	NA	18073	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.000000	0.248756	
mm_7998.1	chr1	134361866	134362066	-	1	NA	NA	NA	33	NM_001042485	57439	Mm.393140	NM_020588	ENSMUSG00000042305	Tmem183a	1300007B12Rik|1700020N19Rik|Tmem183	transmembrane protein 183A	protein-coding	0.130000	0.741294	
mm_4870.1	chr1	187796166	187796366	+	1	NA	NA	NA	187260	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.020000	0.368159	
mm_11191.1	chr2	29122626	29122826	+	1	NA	NA	NA	-2266	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.010000	0.487562	
mm_83766.1	chr9	52048591	52048791	-	1	NA	NA	NA	14	NR_023357	629557	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.175000	0.781095	
mm_49122.1	chr6	8519928	8520128	+	1	NA	NA	NA	-30	NM_001286728	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.000000	0.343284	
mm_11511.1	chr2	32575742	32575942	+	1	NA	NA	NA	124	NM_198191	227733	Mm.78923	NM_198191	ENSMUSG00000046854	Pip5kl1	BC028795	phosphatidylinositol-4-phosphate 5-kinase-like 1	protein-coding	0.060000	0.611940	
mm_171546.1	chr4	147021955	147022155	+	1	NA	NA	NA	205	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.015000	0.477612	
mm_92649.1	chr10	80399264	80399464	-	1	NA	NA	NA	167	NM_013595	17192	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.160000	0.800995	
mm_158335.1	chrX	133981638	133981838	-	1	NA	NA	NA	74	NM_001290718	27359	Mm.38674	NM_013757	ENSMUSG00000031255	Sytl4	Gph|Slp4	synaptotagmin-like 4	protein-coding	0.030000	0.577114	
mm_6318.1	chr1	71602292	71602492	-	1	NA	NA	NA	45236	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.025000	0.532338	
mm_163918.1	chr14	37131163	37131363	-	1	NA	NA	NA	3876	NM_001199122	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.005000	0.323383	
mm_92148.1	chr10	67096797	67096997	-	1	NA	NA	NA	91	NM_001204915	28193	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.170000	0.825871	
mm_61203.1	chr7	64153746	64153946	+	1	NA	NA	NA	11	NM_001039104	17364	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.010000	0.502488	
mm_42565.1	chr5	117142096	117142296	+	1	NA	NA	NA	8608	NM_183306	330177	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.005000	0.427861	-43(CTCTTTAGGGCC,+,0.00)
mm_5968.1	chr1	56981023	56981223	-	1	NA	NA	NA	9654	NR_024325	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0.045000	0.497512	
mm_109101.1	chr12	105019444	105019644	+	1	NA	NA	NA	-9735	NM_172500	212073	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.025000	0.492537	
mm_38668.1	chr4	144686316	144686516	-	1	NA	NA	NA	-48	NM_001085504	230890	Mm.457843	NM_001085504	ENSMUSG00000078505	Gm436	-	predicted gene 436	protein-coding	0.010000	0.442786	
mm_146307.1	chr18	80256213	80256413	+	1	NA	NA	NA	7	NM_001164423	66943	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.080000	0.656716	
mm_164399.1	chr16	34034354	34034554	-	1	NA	NA	NA	-67451	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.060000	0.592040	
mm_5580.1	chr1	39551936	39552136	-	1	NA	NA	NA	-3196	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.030000	0.512438	
mm_1120.1	chr1	59913410	59913610	+	1	NA	NA	NA	504	NM_001037725	72750	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0.175000	0.800995	
mm_170262.1	chr18	15489820	15490020	-	1	NA	NA	NA	-78938	NM_001308646	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.025000	0.497512	
mm_147573.1	chr18	55838930	55839130	-	1	NA	NA	NA	-593102	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.015000	0.427861	
mm_56684.1	chr6	113910391	113910591	-	1	NA	NA	NA	-18952	NM_001036684	11941	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.010000	0.606965	
mm_40833.1	chr5	72914414	72914614	+	1	NA	NA	NA	152	NM_153567	75991	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0.130000	0.756219	
mm_90606.1	chr10	128322593	128322793	+	1	NA	NA	NA	234	NM_019953	56530	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy FGF signaling regulator 2	protein-coding	0.070000	0.676617	
mm_68594.1	chr7	116039471	116039671	-	1	NA	NA	NA	-827	NM_001025559	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.020000	0.477612	
mm_108261.1	chr12	78486765	78486965	+	1	NA	NA	NA	-204670	NM_027597	70897	Mm.56514	NM_027597	ENSMUSG00000056987	Fam71d	4921509E07Rik|4930516C23Rik|GARI-L2	family with sequence similarity 71, member D	protein-coding	0.000000	0.328358	-63(TTGTTTAAATGG,-,0.00)
mm_106563.1	chr11	120633465	120633665	-	1	NA	NA	NA	-18	NM_010756	17134	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.125000	0.696517	
mm_89249.1	chr10	87859017	87859217	+	1	NA	NA	NA	65	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.015000	0.427861	
mm_14613.1	chr2	136713418	136713618	+	1	NA	NA	NA	68	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.045000	0.572139	-99(GGCTATTAAAAG,-,0.00)
mm_27314.1	chr3	50366632	50366832	-	1	NA	NA	NA	76881	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.248756	
mm_71373.1	chr8	45784655	45784855	+	1	NA	NA	NA	34542	NR_045739	319940	Mm.441720	NR_045739	ENSMUSG00000085440	Sorbs2os	D330022K07Rik	sorbin and SH3 domain containing 2, opposite strand	ncRNA	0.000000	0.313433	
mm_46049.1	chr5	92083361	92083561	-	1	NA	NA	NA	137	NM_001080794	23881	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.135000	0.701493	
mm_67130.1	chr7	70366947	70367147	-	1	NA	NA	NA	-301	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.005000	0.417910	
mm_113925.1	chr13	49607915	49608115	+	1	NA	NA	NA	-56	NM_008760	18295	Mm.4258	NM_008760	ENSMUSG00000021390	Ogn	3110079A16Rik|OG|OIF|SLRR3A|mimecan|mimican	osteoglycin	protein-coding	0.005000	0.427861	
mm_146973.1	chr18	33463781	33463981	-	1	NA	NA	NA	148	NM_001109988	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.145000	0.781095	
mm_18762.1	chr2	73453826	73454026	-	1	NA	NA	NA	-37	NM_001289722	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.010000	0.442786	
mm_78508.1	chr9	32754548	32754748	+	1	NA	NA	NA	58606	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.030000	0.532338	
mm_132156.1	chr16	32177569	32177769	+	1	NA	NA	NA	-2131	NM_001033539	328660	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.020000	0.472637	
mm_159010.1	chr1	164123504	164123704	+	1	NA	NA	NA	8340	NM_011347	20344	Mm.3337	NM_011347	ENSMUSG00000026580	Selp	CD62P|GMP-140|Grmp|LECAM3|PADGEM	selectin, platelet	protein-coding	0.000000	0.383085	-84(ATCTTTAAAAGC,-,0.00),-83(TCTTTAAAAGCC,+,0.00)
mm_114196.1	chr13	55904998	55905198	+	1	NA	NA	NA	-73673	NM_011097	18740	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.015000	0.547264	
mm_22385.1	chr2	181156905	181157105	-	1	NA	NA	NA	10	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.090000	0.651741	
mm_7554.1	chr1	124678210	124678410	-	1	NA	NA	NA	-632751	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.383085	
mm_5989.1	chr1	58504831	58505031	-	1	NA	NA	NA	178	NM_001271526	18393	Mm.3411	NM_008765	ENSMUSG00000026037	Orc2	AU041563|Orc2l	origin recognition complex, subunit 2	protein-coding	0.120000	0.716418	
mm_52298.1	chr6	108783156	108783356	+	1	NA	NA	NA	197	NM_026011	67166	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0.125000	0.681592	
mm_100584.1	chr11	120948413	120948613	+	1	NA	NA	NA	29	NM_030696	80879	Mm.28632	NM_030696	ENSMUSG00000025161	Slc16a3	Mct3|Mct4	solute carrier family 16 (monocarboxylic acid transporters), member 3	protein-coding	0.030000	0.567164	
mm_55094.1	chr6	49263937	49264137	-	1	NA	NA	NA	15	NM_001347209	101214	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha homolog (Drosophila)	protein-coding	0.115000	0.671642	
mm_33536.1	chr4	130932484	130932684	+	1	NA	NA	NA	-11801	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.005000	0.437811	-68(CCATTTATACAT,+,0.00)
mm_158113.1	chrX	102189224	102189424	-	1	NA	NA	NA	67	NM_009094	20102	Mm.66	NM_009094	ENSMUSG00000031320	Rps4x	Rps4|Rps4-1	ribosomal protein S4, X-linked	protein-coding	0.090000	0.636816	
mm_122078.1	chr14	30606605	30606805	-	1	NA	NA	NA	3605	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.020000	0.512438	
mm_29614.1	chr3	121277092	121277292	-	1	NA	NA	NA	-13876	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0.010000	0.442786	
mm_122186.1	chr14	31637641	31637841	-	1	NA	NA	NA	3224	NM_019975	56794	Mm.38887	NM_019975	ENSMUSG00000021884	Hacl1	1600020H07Rik|Hpcl|Phyh2	2-hydroxyacyl-CoA lyase 1	protein-coding	0.000000	0.358209	
mm_122559.1	chr14	49245315	49245515	-	1	NA	NA	NA	13	NM_025956	67082	Mm.87439	NM_025956	ENSMUSG00000021850	1700011H14Rik	-	RIKEN cDNA 1700011H14 gene	protein-coding	0.015000	0.432836	
mm_108409.1	chr12	81780194	81780394	+	1	NA	NA	NA	876	NM_177395	338372	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.035000	0.621891	
mm_147943.1	chr18	66212252	66212452	-	1	NA	NA	NA	6981	NR_030467	751558		NR_030467	ENSMUSG00000076147	Mir694	Mirn694|mir-694|mmu-mir-694	microRNA 694	ncRNA	0.005000	0.442786	
mm_13519.1	chr2	110003469	110003669	+	1	NA	NA	NA	-14248	NM_026613	68201	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	0.010000	0.328358	
mm_132923.1	chr16	49791064	49791264	+	1	NA	NA	NA	-64490	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.010000	0.452736	
mm_165262.1	chr2	73561018	73561218	+	1	NA	NA	NA	19220	NM_007389	11435	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	0.055000	0.601990	
mm_161014.1	chr11	119228951	119229151	+	1	NA	NA	NA	479	NM_175430	207607	Mm.189885	NM_175430	ENSMUSG00000039963	Ccdc40	B930008I02Rik	coiled-coil domain containing 40	protein-coding	0.075000	0.562189	
mm_47009.1	chr5	115474495	115474695	-	1	NA	NA	NA	8329	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.045000	0.527363	
mm_97997.1	chr11	84129671	84129871	+	1	NA	NA	NA	-203	NM_172562	217031	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	0.075000	0.631841	
mm_129948.1	chr15	84987888	84988088	-	1	NA	NA	NA	-17	NM_001033273	223739	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.150000	0.756219	
mm_23538.1	chr3	61002699	61002899	+	1	NA	NA	NA	14	NM_001282016	18441	Mm.281452	NM_008772	ENSMUSG00000027765	P2ry1	P2Y1	purinergic receptor P2Y, G-protein coupled 1	protein-coding	0.085000	0.691542	
mm_129631.1	chr15	80228334	80228534	-	1	NA	NA	NA	-5646	NM_178719	239555	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.025000	0.572139	
mm_79766.1	chr9	62783430	62783630	+	1	NA	NA	NA	28118	NM_010193	14155	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.025000	0.532338	
mm_128962.1	chr15	74818629	74818829	-	1	NA	NA	NA	86	NM_001177524	625599	Mm.390785	NM_001177524	ENSMUSG00000068349	Gml	EG625599|HemT	glycosylphosphatidylinositol anchored molecule like	protein-coding	0.035000	0.527363	
mm_80829.1	chr9	96905300	96905500	+	1	NA	NA	NA	-15926	NM_001289645	235534	Mm.233031	NM_153420	ENSMUSG00000043587	Pxylp1	9430094M07Rik|Acpl2|BB177120|C130099A20Rik	2-phosphoxylose phosphatase 1	protein-coding	0.055000	0.497512	
mm_8596.1	chr1	156032863	156033063	-	1	NA	NA	NA	1854	NM_001160019	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.005000	0.427861	
mm_161863.1	chr18	32815273	32815473	+	1	NA	NA	NA	-10	NM_021367	53603	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	0.025000	0.517413	
mm_149777.1	chr19	23133713	23133913	+	1	NA	NA	NA	-7413	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.010000	0.517413	-33(GCTTAAAAAGAG,+,0.00)
mm_11249.1	chr2	29890456	29890656	+	1	NA	NA	NA	493	NM_013615	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.045000	0.631841	
mm_151900.1	chr19	5799124	5799324	-	1	NA	NA	NA	-3243	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.005000	0.412935	
mm_45114.1	chr5	45639202	45639402	-	1	NA	NA	NA	27	NR_102378	319251	Mm.402857	NR_102378	ENSMUSG00000097825	9630001P10Rik	-	RIKEN cDNA 9630001P10 gene	ncRNA	0.075000	0.616915	
mm_91611.1	chr10	41490252	41490452	-	1	NA	NA	NA	-12	NM_009213	20598	Mm.953	NM_009213	ENSMUSG00000019822	Smpd2	AW108287|nSMase|nSMase1	sphingomyelin phosphodiesterase 2, neutral	protein-coding	0.085000	0.636816	
mm_19003.1	chr2	76872772	76872972	-	1	NA	NA	NA	109675	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.055000	0.487562	
mm_82730.1	chr9	25151636	25151836	-	1	NA	NA	NA	45	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.130000	0.771144	
mm_125665.1	chr15	65787009	65787209	+	1	NA	NA	NA	68	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0.185000	0.746269	
mm_56207.1	chr6	89258162	89258362	-	1	NA	NA	NA	27463	NR_131021	75131	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	-	RIKEN cDNA 4930512J16 gene	ncRNA	0.015000	0.547264	
mm_109933.1	chr12	10900216	10900416	-	1	NA	NA	NA	-147497	NR_045860	71457	Mm.95280	NR_045860		7420701I03Rik	-	RIKEN cDNA 7420701I03 gene	ncRNA	0.045000	0.487562	
mm_47743.1	chr5	130255261	130255461	-	1	NA	NA	NA	169	NM_023248	66711	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	Shwachman-Bodian-Diamond syndrome homolog (human)	protein-coding	0.095000	0.626866	
mm_54851.1	chr6	42591802	42592002	-	1	NA	NA	NA	5470	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.010000	0.482587	
mm_140041.1	chr17	74489385	74489585	+	1	NA	NA	NA	-8	NM_026417	67864	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	0.080000	0.611940	
mm_123881.1	chr14	72709442	72709642	-	1	NA	NA	NA	461	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.165000	0.771144	
mm_63921.1	chr7	139330705	139330905	+	1	NA	NA	NA	-58304	NM_183144	212111	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.010000	0.462687	-33(GAGTTTAAATGG,-,0.00)
mm_98379.1	chr11	94081251	94081451	+	1	NA	NA	NA	37146	NM_001025429	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.010000	0.383085	
mm_116008.1	chr13	24613519	24613719	-	1	NA	NA	NA	-987	NM_001286101	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.005000	0.467662	-10(GCTTTTCTAGAG,+,0.00)
mm_86331.1	chr9	123071215	123071415	-	1	NA	NA	NA	36574	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.005000	0.577114	
mm_125082.1	chr15	26308947	26309147	+	1	NA	NA	NA	-1	NM_177597	211147	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0.125000	0.751244	
mm_119344.1	chr14	41104226	41104426	+	1	NA	NA	NA	-707	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.000000	0.407960	
mm_128705.1	chr15	63649024	63649224	-	1	NA	NA	NA	159615	NM_031378	83492	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	0.030000	0.497512	
mm_117727.1	chr13	95531700	95531900	-	1	NA	NA	NA	-6560	NM_007974	14063	Mm.1614	NM_007974	ENSMUSG00000021678	F2rl1	Gpcr11|PAR-2|Par2	coagulation factor II (thrombin) receptor-like 1	protein-coding	0.015000	0.552239	
mm_50672.1	chr6	51544498	51544698	+	1	NA	NA	NA	75	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.005000	0.482587	
mm_59917.1	chr7	30419540	30419740	+	1	NA	NA	NA	214	NM_011827	23900	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	0.005000	0.592040	-91(CACCAGAAAAGG,-,0.00)
mm_48880.1	chr5	151127485	151127685	-	1	NA	NA	NA	62608	NM_001163493	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.015000	0.427861	-39(CCTCTTAGAGCT,+,0.00)
mm_85712.1	chr9	108190375	108190575	-	1	NA	NA	NA	-92	NM_007567	12217	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	0.155000	0.756219	
mm_14148.1	chr2	126552810	126553010	+	1	NA	NA	NA	-114	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0.080000	0.661692	
mm_6616.1	chr1	75506319	75506519	-	1	NA	NA	NA	33	NM_178884	98733	Mm.236454	NM_178884	ENSMUSG00000026211	Obsl1	AW822216	obscurin-like 1	protein-coding	0.055000	0.681592	
mm_10228.1	chr2	6322723	6322923	+	1	NA	NA	NA	66	NM_001080548	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.130000	0.756219	
mm_12198.1	chr2	65845640	65845840	+	1	NA	NA	NA	-27	NM_001290666	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding	0.025000	0.542289	-33(TCCTCTAAAAGC,-,0.00)
mm_109349.1	chr12	109606689	109606889	+	1	NA	NA	NA	2844	NR_028261	75745	Mm.293263	NR_028261		Rian	5530401N18Rik|C130089L09Rik|Meg8	RNA imprinted and accumulated in nucleus	ncRNA	0.010000	0.402985	
mm_41163.1	chr5	87932350	87932550	+	1	NA	NA	NA	6817	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.005000	0.313433	
mm_162658.1	chr10	4358537	4358737	+	1	NA	NA	NA	29471	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.015000	0.512438	
mm_34964.1	chr4	156008545	156008745	+	1	NA	NA	NA	-5050	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.015000	0.487562	
mm_40215.1	chr5	37050815	37051015	+	1	NA	NA	NA	58	NM_178394	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0.015000	0.621891	
mm_156318.1	chrX	137038021	137038221	+	1	NA	NA	NA	181	NM_001082412	67062	Mm.276518	NM_001082412	ENSMUSG00000044348	Slc25a53	2310046F18Rik|2810402A17Rik|AI448995|AI841128|Mcart6	solute carrier family 25, member 53	protein-coding	0.065000	0.606965	
mm_2503.1	chr1	106194341	106194541	+	1	NA	NA	NA	22572	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.010000	0.502488	
mm_49654.1	chr6	31113675	31113875	+	1	NA	NA	NA	-50682	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.060000	0.601990	
mm_85388.1	chr9	103228354	103228554	-	1	NA	NA	NA	1832	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.010000	0.517413	
mm_123768.1	chr14	70211807	70212007	-	1	NA	NA	NA	-4236	NM_011366	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.020000	0.487562	
mm_86720.1	chr10	19015602	19015802	+	1	NA	NA	NA	-292	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.015000	0.467662	-75(TTTTTTATAGCT,+,0.00)
mm_148429.1	chr19	3941803	3942003	+	1	NA	NA	NA	6717	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.015000	0.542289	
mm_76152.1	chr8	82353467	82353667	-	1	NA	NA	NA	49019	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.020000	0.487562	
mm_17033.1	chr2	20654503	20654703	-	1	NA	NA	NA	135090	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.005000	0.412935	
mm_25097.1	chr3	101130957	101131157	+	1	NA	NA	NA	-20891	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding	0.025000	0.572139	
mm_3657.1	chr1	153116471	153116671	+	1	NA	NA	NA	69876	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.010000	0.402985	
mm_53540.1	chr6	136808155	136808355	+	1	NA	NA	NA	7	NM_177688	232440	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	0.105000	0.651741	
mm_74812.1	chr8	22671567	22671767	-	1	NA	NA	NA	-18230	NM_011130	18970	Mm.123211	NM_011130	ENSMUSG00000031536	Polb	A430088C08Rik	polymerase (DNA directed), beta	protein-coding	0.030000	0.447761	
mm_25267.1	chr3	104793996	104794196	+	1	NA	NA	NA	5062	NM_007484	11853	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0.020000	0.577114	
mm_7269.1	chr1	96556623	96556823	-	1	NA	NA	NA	105850	NR_040478	75159	Mm.243854	NR_040478	ENSMUSG00000100589	4930533P14Rik	-	RIKEN cDNA 4930533P14 gene	ncRNA	0.010000	0.368159	
mm_147163.1	chr18	36726012	36726212	-	1	NA	NA	NA	703	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.090000	0.562189	
mm_71758.1	chr8	66386101	66386301	+	1	NA	NA	NA	-100	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.000000	0.427861	
mm_173124.1	chrX	166854086	166854286	+	1	NA	NA	NA	192161	NR_046015	382255	Mm.336320	NR_046015	ENSMUSG00000086860	Gm1720	-	predicted gene 1720	ncRNA	0.025000	0.442786	
mm_91370.1	chr10	29535694	29535894	-	1	NA	NA	NA	73	NM_028351	72780	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0.065000	0.701493	
mm_98193.1	chr11	87794109	87794309	+	1	NA	NA	NA	425	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.000000	0.442786	-34(GTGTATAAAGGG,-,0.00)
mm_14755.1	chr2	144714689	144714889	+	1	NA	NA	NA	-108877	NM_025490	66328	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	0.010000	0.537313	-33(GTTTTTATAGGG,+,0.00)
mm_68666.1	chr7	118855899	118856099	-	1	NA	NA	NA	-1	NM_023197	66356	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0.155000	0.746269	
mm_160125.1	chr7	28371367	28371567	-	1	NA	NA	NA	1195	NM_138752	101497	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.020000	0.577114	
mm_121946.1	chr14	24176567	24176767	-	1	NA	NA	NA	69253	NM_001163513	71228	Mm.68971	NM_027726	ENSMUSG00000021782	Dlg5	4933429D20Rik|T25557|mKIAA0583	discs, large homolog 5 (Drosophila)	protein-coding	0.030000	0.577114	
mm_132518.1	chr16	37580182	37580382	+	1	NA	NA	NA	129	NM_013547	15233	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	0.015000	0.477612	-34(GAGTTTTAAAGA,-,0.00)
mm_71548.1	chr8	47853750	47853950	+	1	NA	NA	NA	29368	NM_029383	75677	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	0.010000	0.417910	
mm_6821.1	chr1	84194256	84194456	-	1	NA	NA	NA	24605	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.407960	-50(GGATTTAAAAGC,-,0.00)
mm_596.1	chr1	39555379	39555579	+	1	NA	NA	NA	-6639	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.025000	0.497512	
mm_137549.1	chr17	27557807	27558007	+	1	NA	NA	NA	1254	NM_001166477	111241	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1-rs1	ENSMUSG00000041059|Hmgi-rs1	high mobility group AT-hook I, related sequence 1	protein-coding	0.085000	0.661692	-39(GCGCCTAAAGGG,-,0.00)
mm_73393.1	chr8	105708222	105708422	+	1	NA	NA	NA	19	NM_027655	71046	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	0.020000	0.537313	
mm_121836.1	chr14	20544592	20544792	-	1	NA	NA	NA	-1601	NR_033571	75602	Mm.437061	NR_033571	ENSMUSG00000084925	1810062O18Rik	-	RIKEN cDNA 1810062O18 gene	ncRNA	0.010000	0.432836	
mm_104287.1	chr11	90130147	90130347	-	1	NA	NA	NA	99899	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.040000	0.507463	
mm_13309.1	chr2	102658634	102658834	+	1	NA	NA	NA	51	NM_001077514	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.085000	0.656716	
mm_109957.1	chr12	12491776	12491976	-	1	NA	NA	NA	-99401	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	0.010000	0.447761	
mm_10038.1	chr1	192855599	192855799	-	1	NA	NA	NA	53	NM_198247	214791	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	0.125000	0.741294	
mm_138887.1	chr17	43455343	43455543	+	1	NA	NA	NA	47330	NM_008585	17287	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	0.015000	0.462687	
mm_63388.1	chr7	127232794	127232994	+	1	NA	NA	NA	236	NR_030674	100043580	Mm.482209	NR_030674	ENSMUSG00000000486	Gm4532	-	predicted gene 4532	ncRNA	0.050000	0.582090	
mm_67174.1	chr7	73558411	73558611	-	1	NA	NA	NA	-116	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.120000	0.746269	
mm_20534.1	chr2	131041263	131041463	-	1	NA	NA	NA	-965	NR_105969	102465606		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	0.145000	0.805970	
mm_163117.1	chr11	75438270	75438470	+	1	NA	NA	NA	1131	NM_008878	18816	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	0.025000	0.597015	
mm_8359.1	chr1	150454500	150454700	-	1	NA	NA	NA	11565	NM_021400	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.010000	0.547264	
mm_166101.1	chr4	145246743	145246943	-	1	NA	NA	NA	27	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.070000	0.706468	
mm_99931.1	chr11	110997448	110997648	+	1	NA	NA	NA	61	NM_001252209	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.015000	0.507463	
mm_92755.1	chr10	81026095	81026295	-	1	NA	NA	NA	-818	NM_145217	208666	Mm.44995	NM_145217	ENSMUSG00000043670	Diras1	Di-Ras1|Gbts1|RIG	DIRAS family, GTP-binding RAS-like 1	protein-coding	0.015000	0.472637	
mm_3582.1	chr1	151136246	151136446	+	1	NA	NA	NA	-1688	NR_038011	402734	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.015000	0.457711	
mm_63864.1	chr7	135684119	135684319	+	1	NA	NA	NA	-31905	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.010000	0.557214	
mm_76637.1	chr8	92355800	92356000	-	1	NA	NA	NA	220	NR_110452	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	0.175000	0.805970	
mm_3325.1	chr1	137924798	137924998	+	1	NA	NA	NA	-41557	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.015000	0.422886	-15(GCCTCTTTGAGG,-,0.00)
mm_46736.1	chr5	110809953	110810153	-	1	NA	NA	NA	28	NM_009469	22241	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	0.110000	0.701493	
mm_22803.1	chr3	26637528	26637728	+	1	NA	NA	NA	-3	NM_029150	70862	Mm.330943	NM_027583	ENSMUSG00000039335	Spata16	4921511F01Rik|4930503K02Rik|Nyd-sp12	spermatogenesis associated 16	protein-coding	0.050000	0.542289	
mm_57379.1	chr6	124814060	124814260	-	1	NA	NA	NA	136	NM_009415	21991	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.045000	0.577114	
mm_64271.1	chr7	141805555	141805755	+	1	NA	NA	NA	16644	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.020000	0.532338	
mm_143404.1	chr17	70761300	70761500	-	1	NA	NA	NA	85377	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.025000	0.492537	
mm_151541.1	chr19	59171647	59171847	+	1	NA	NA	NA	-1718	NM_009501	22326	Mm.23801	NM_009501	ENSMUSG00000006270	Vax1	-	ventral anterior homeobox 1	protein-coding	0.090000	0.676617	
mm_117396.1	chr13	73688975	73689175	-	1	NA	NA	NA	-10751	NM_027780	71390	Mm.105251	NM_027780		Slc6a19os	5430425J12Rik	solute carrier family 6 (neurotransmitter transporter), member 19, opposite strand	protein-coding	0.010000	0.572139	78(GCCCCTAAGAGC,-,0.00)
mm_8414.1	chr1	152090095	152090295	-	1	NA	NA	NA	125	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik|ENSMUSG00000073540	RIKEN cDNA 1700025G04 gene	protein-coding	0.155000	0.756219	
mm_23293.1	chr3	52129367	52129567	+	1	NA	NA	NA	-24461	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.005000	0.572139	-33(CACTATAAAGGG,-,0.00)
mm_19849.1	chr2	113748959	113749159	-	1	NA	NA	NA	9589	NM_011824	23892	Mm.166318	NM_011824	ENSMUSG00000074934	Grem1	Cktsf1b1|Drm|Grem|ld	gremlin 1, DAN family BMP antagonist	protein-coding	0.035000	0.497512	
mm_22894.1	chr3	30792950	30793150	+	1	NA	NA	NA	174	NM_027016	69276	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	0.110000	0.716418	
mm_136763.1	chr17	8801647	8801847	+	1	NA	NA	NA	2	NM_011866	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.125000	0.756219	
mm_81980.1	chr9	121314290	121314490	+	1	NA	NA	NA	-37218	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.040000	0.462687	
mm_92065.1	chr10	62527294	62527494	-	1	NA	NA	NA	-19639	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.050000	0.547264	
mm_43589.1	chr5	137748868	137749068	+	1	NA	NA	NA	2999	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.010000	0.442786	
mm_28424.1	chr3	90451347	90451547	-	1	NA	NA	NA	14419	NM_008727	18160	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.025000	0.587065	
mm_166109.1	chr4	147103924	147104124	+	1	NA	NA	NA	-35588	NR_045446	71270	Mm.460830	NR_045446	ENSMUSG00000093617	4933438K21Rik	-	RIKEN cDNA 4933438K21 gene	ncRNA	0.010000	0.373134	80(AAGCATAAAAGC,-,0.00)
mm_160619.1	chr9	89623007	89623207	-	1	NA	NA	NA	-121	NM_153509	209743	Mm.242899	NM_153509	ENSMUSG00000039313	AF529169	DD1|Kiaa1024	cDNA sequence AF529169	protein-coding	0.055000	0.676617	
mm_52694.1	chr6	118880058	118880258	+	1	NA	NA	NA	0	NR_046053	74363	Mm.399403	NR_046053		4931430N09Rik	-	RIKEN cDNA 4931430N09 gene	ncRNA	0.010000	0.492537	
mm_77998.1	chr9	8900396	8900596	+	1	NA	NA	NA	663	NM_008829	18667	Mm.12798	NM_008829	ENSMUSG00000031870	Pgr	9930019P03Rik|BB114106|ENSMUSG00000074510|NR3C3|PR|PR-A|PR-B	progesterone receptor	protein-coding	0.040000	0.636816	
mm_57731.1	chr6	128960985	128961185	-	1	NA	NA	NA	-10075	NM_001168224	70809	Mm.439891	NM_027562	ENSMUSG00000000248	Clec2g	4632413B12Rik|Clr-c|Clr-d|Clrc|Clrd|Clrx|Ddv10|Ocilrp1	C-type lectin domain family 2, member g	protein-coding	0.000000	0.462687	
mm_123403.1	chr14	63543571	63543771	-	1	NA	NA	NA	282	NM_177594	210376	Mm.441613	NM_177594	ENSMUSG00000035078	Mtmr9	9430075G12Rik|AA516943|AF073881|LIP-STYX|MTMR8|mMTMH3	myotubularin related protein 9	protein-coding	0.095000	0.706468	
mm_64643.1	chr7	4008285	4008485	-	1	NA	NA	NA	54819	NM_001302677	52855	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.005000	0.348259	
mm_96612.1	chr11	69097668	69097868	+	1	NA	NA	NA	-1188	NM_011065	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.030000	0.567164	
mm_81418.1	chr9	109055515	109055715	+	1	NA	NA	NA	749	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.015000	0.552239	
mm_158982.1	chr1	130740167	130740367	+	1	NA	NA	NA	8291	NM_177604	212439	Mm.268547	NM_177604	ENSMUSG00000042510	AA986860	E030025M07|Sarg	expressed sequence AA986860	protein-coding	0.010000	0.517413	8(CTTTTAATGGCA,+,0.00)
mm_13793.1	chr2	118900288	118900488	+	1	NA	NA	NA	-1227	NM_001045523	228536	Mm.330487	NM_001045523	ENSMUSG00000040007	Bahd1	AL022997|AW541238|Gm117|mKIAA0945	bromo adjacent homology domain containing 1	protein-coding	0.040000	0.597015	
mm_21665.1	chr2	164425249	164425449	-	1	NA	NA	NA	17839	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.015000	0.378109	-54(GTTTTTAAATGG,-,0.00)
mm_106098.1	chr11	116206381	116206581	-	1	NA	NA	NA	-7436	NM_015729	11430	Mm.356689	NM_015729	ENSMUSG00000020777	Acox1	AOX|Acox|D130055E20Rik|Paox	acyl-Coenzyme A oxidase 1, palmitoyl	protein-coding	0.005000	0.497512	
mm_142150.1	chr17	36020401	36020601	-	1	NA	NA	NA	59	NM_008207	15042	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0.040000	0.522388	
mm_68147.1	chr7	102249364	102249564	-	1	NA	NA	NA	654	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.020000	0.477612	
mm_169843.1	chr16	3115638	3115838	-	1	NA	NA	NA	-476660	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.015000	0.452736	
mm_109692.1	chr12	113146223	113146423	+	1	NA	NA	NA	-5689	NM_007763	12925	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	0.040000	0.547264	
mm_94050.1	chr10	128180007	128180207	-	1	NA	NA	NA	190	NM_001039080	56516	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.010000	0.502488	
mm_132398.1	chr16	35001113	35001313	+	1	NA	NA	NA	-21208	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.015000	0.517413	
mm_60109.1	chr7	35448983	35449183	+	1	NA	NA	NA	-9	NM_001199015	30962	Mm.45874	NM_021291	ENSMUSG00000030492	Slc7a9	CSNU3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	protein-coding	0.025000	0.537313	
mm_54519.1	chr6	35539613	35539813	-	1	NA	NA	NA	175	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.120000	0.696517	
mm_35704.1	chr4	44167794	44167994	-	1	NA	NA	NA	-356	NM_175201	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.100000	0.716418	
mm_159822.1	chr5	123445517	123445717	+	1	NA	NA	NA	36484	NM_029594	76399	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.025000	0.587065	
mm_149474.1	chr19	11747465	11747665	+	1	NA	NA	NA	6	NM_008118	14603	Mm.456	NM_008118	ENSMUSG00000024682	Gif	AV073125	gastric intrinsic factor	protein-coding	0.010000	0.467662	
mm_69208.1	chr7	127448537	127448737	-	1	NA	NA	NA	521	NM_175163	71131	Mm.474533	NM_175163	ENSMUSG00000048921	Zfp689	4933416E05Rik|Znf689	zinc finger protein 689	protein-coding	0.070000	0.661692	
mm_125187.1	chr15	32268041	32268241	+	1	NA	NA	NA	23328	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding	0.005000	0.427861	
mm_83065.1	chr9	37552633	37552833	-	1	NA	NA	NA	12	NM_022029	64011	Mm.335065	NM_022029	ENSMUSG00000053310	Nrgn	0710001B06Rik|AI838505|NG|NG/RC3|Pss1|R75334|RC3	neurogranin	protein-coding	0.070000	0.631841	
mm_92781.1	chr10	81266820	81267020	-	1	NA	NA	NA	6	NM_025317	66047	Mm.43397	NM_025317	ENSMUSG00000034932	Mrpl54	0610008M19Rik|D10Sut1e	mitochondrial ribosomal protein L54	protein-coding	0.100000	0.641791	-83(TTTTTTAAAGAC,+,0.00)
mm_156459.1	chrX	142832407	142832607	+	1	NA	NA	NA	93507	NR_030523	723976		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	0.015000	0.557214	
mm_76123.1	chr8	80869080	80869280	-	1	NA	NA	NA	11299	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.035000	0.552239	
mm_37216.1	chr4	117914607	117914807	-	1	NA	NA	NA	292	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	0.025000	0.587065	
mm_82106.1	chr9	123067399	123067599	+	1	NA	NA	NA	32758	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.010000	0.422886	82(TCTTTTATGCCA,+,0.00)
mm_103917.1	chr11	83589280	83589480	-	1	NA	NA	NA	3707	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.045000	0.497512	
mm_97493.1	chr11	78343341	78343541	+	1	NA	NA	NA	-54	NM_001313985	22248	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.100000	0.741294	
mm_14661.1	chr2	138256473	138256673	+	1	NA	NA	NA	-11	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.095000	0.736318	
mm_50299.1	chr6	47522234	47522434	+	1	NA	NA	NA	68010	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.005000	0.363184	
mm_5638.1	chr1	40439441	40439641	-	1	NA	NA	NA	-88	NM_001025602	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.015000	0.447761	
mm_106535.1	chr11	120575404	120575604	-	1	NA	NA	NA	-2568	NM_011032	18453	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.005000	0.482587	
mm_112715.1	chr13	19184943	19185143	+	1	NA	NA	NA	210770	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.507463	
mm_9725.1	chr1	180193560	180193760	-	1	NA	NA	NA	-175	NM_001163290	67426	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0.025000	0.477612	
mm_144380.1	chr18	20666359	20666559	+	1	NA	NA	NA	1209	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.020000	0.482587	
mm_153388.1	chr19	40382486	40382686	-	1	NA	NA	NA	19724	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.010000	0.522388	
mm_91850.1	chr10	58675601	58675801	-	1	NA	NA	NA	-5	NM_010100	13608	Mm.174523	NM_010100	ENSMUSG00000003227	Edar	ED1R|ED3|ED5|EDA-A1R|EDA3|dl	ectodysplasin-A receptor	protein-coding	0.070000	0.626866	
mm_79358.1	chr9	54286238	54286438	+	1	NA	NA	NA	-148	NM_177350	235379	Mm.123549	NM_177350	ENSMUSG00000046167	Gldn	CRG-L2|Clom|Colm|Crgl2|Crlg2	gliomedin	protein-coding	0.040000	0.631841	
mm_69573.1	chr7	135700810	135701010	-	1	NA	NA	NA	15469	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.020000	0.442786	
mm_149494.1	chr19	11821736	11821936	+	1	NA	NA	NA	-2433	NM_001025307	20908	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.000000	0.303483	
mm_87115.1	chr10	33256433	33256633	+	1	NA	NA	NA	-176	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.005000	0.353234	16(CCTTTTATAGCA,+,0.00)
mm_167873.1	chrX	36872331	36872531	+	1	NA	NA	NA	-1864	NM_001313696	22209	Mm.395649	NM_019668	ENSMUSG00000016308	Ube2a	HHR6A|HR6A|Mhr6a	ubiquitin-conjugating enzyme E2A	protein-coding	0.005000	0.432836	
mm_171018.1	chr2	83972229	83972429	+	1	NA	NA	NA	-31103	NM_027964	71861	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.050000	0.442786	
mm_96827.1	chr11	69997371	69997571	+	1	NA	NA	NA	9	NM_001291127	78246	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.075000	0.666667	
mm_9755.1	chr1	180813498	180813698	-	1	NA	NA	NA	7	NM_008210	15078	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	H3.3A	H3 histone, family 3A	protein-coding	0.125000	0.731343	
mm_14238.1	chr2	127695766	127695966	+	1	NA	NA	NA	34031	NM_145532	228576	Mm.133036	NM_145532	ENSMUSG00000027377	Mall	BC012256|BENE	mal, T cell differentiation protein-like	protein-coding	0.005000	0.562189	
mm_121950.1	chr14	24245819	24246019	-	1	NA	NA	NA	1	NM_001163513	71228	Mm.68971	NM_027726	ENSMUSG00000021782	Dlg5	4933429D20Rik|T25557|mKIAA0583	discs, large homolog 5 (Drosophila)	protein-coding	0.115000	0.741294	
mm_6706.1	chr1	82283718	82283918	-	1	NA	NA	NA	7621	NM_010570	16367	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.015000	0.417910	16(CCCTCTAAAAAG,-,0.00)
mm_41306.1	chr5	90468412	90468612	+	1	NA	NA	NA	7642	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.462687	
mm_39700.1	chr5	27261848	27262048	+	1	NA	NA	NA	13	NM_001136060	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.075000	0.666667	
mm_47026.1	chr5	115535684	115535884	-	1	NA	NA	NA	-23683	NM_007475	11837	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.025000	0.567164	
mm_89510.1	chr10	94142744	94142944	+	1	NA	NA	NA	-5087	NM_011629	22025	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	0.020000	0.383085	-74(CTATCTAAAAGG,-,0.00)
mm_78865.1	chr9	44398332	44398532	+	1	NA	NA	NA	256	NM_008063	14385	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0.020000	0.537313	
mm_26896.1	chr3	19264833	19265033	-	1	NA	NA	NA	75	NM_008802	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.005000	0.542289	
mm_29300.1	chr3	107928904	107929104	-	1	NA	NA	NA	2741	NM_026672	68312	Mm.458189	NM_026672	ENSMUSG00000004035	Gstm7	0610005A07Rik|AI894236|Cd203c	glutathione S-transferase, mu 7	protein-coding	0.025000	0.552239	
mm_2015.1	chr1	87127808	87128008	+	1	NA	NA	NA	2900	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.040000	0.646766	
mm_102158.1	chr11	53724300	53724500	-	1	NA	NA	NA	3606	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.010000	0.507463	
mm_88255.1	chr10	73202057	73202257	+	1	NA	NA	NA	-115452	NR_040646	327768	Mm.417745	NR_040646		A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0.005000	0.373134	
mm_79557.1	chr9	58016264	58016464	+	1	NA	NA	NA	1412	NM_019779	13070	Mm.302865	NM_019779	ENSMUSG00000032323	Cyp11a1	Cyp11a|Cypxia1|D9Ertd411e|P450scc|Scc|cscc	cytochrome P450, family 11, subfamily a, polypeptide 1	protein-coding	0.035000	0.557214	
mm_35456.1	chr4	40703029	40703229	-	1	NA	NA	NA	65	NM_001025444	66408	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0.075000	0.592040	
mm_38524.1	chr4	141424479	141424679	-	1	NA	NA	NA	3800	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.005000	0.527363	
mm_161499.1	chr15	89378704	89378904	-	1	NA	NA	NA	450	NM_001013022	70113	Mm.247273	NM_001013022	ENSMUSG00000047394	Odf3b	2010001J22Rik	outer dense fiber of sperm tails 3B	protein-coding	0.105000	0.686567	
mm_120313.1	chr14	63142516	63142716	+	1	NA	NA	NA	20154	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.025000	0.572139	
mm_104926.1	chr11	99986507	99986707	-	1	NA	NA	NA	-14	NM_001256057	100504183	Mm.426560	NM_001256057	ENSMUSG00000078253	Krtap16-1	Gm11570|OTTMUSG00000002209	keratin associated protein 16-1	protein-coding	0.010000	0.532338	-33(GAGTATAAAAGG,-,0.00)
mm_161938.1	chr19	3904904	3905104	-	1	NA	NA	NA	226	NM_016921	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.015000	0.527363	
mm_172704.1	chr8	65453922	65454122	+	1	NA	NA	NA	-164018	NM_001293784	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.050000	0.626866	
mm_154669.1	chrX	7882080	7882280	+	1	NA	NA	NA	-2064	NM_001083937	22232	Mm.214976	NM_078484	ENSMUSG00000031156	Slc35a2	AI327289|Had-1|Had1|Sfc8|UGT|Ugalt	solute carrier family 35 (UDP-galactose transporter), member A2	protein-coding	0.025000	0.582090	
mm_115463.1	chr13	119428498	119428698	+	1	NA	NA	NA	-2	NM_001079849	218693	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0.130000	0.731343	
mm_26642.1	chr3	153844121	153844321	+	1	NA	NA	NA	-26	NM_025758	66772	Mm.116960	NM_025758	ENSMUSG00000038997	Asb17	4933436O18Rik	ankyrin repeat and SOCS box-containing 17	protein-coding	0.030000	0.562189	
mm_131728.1	chr16	21835872	21836072	+	1	NA	NA	NA	41625	NR_037957	100043489	Mm.326535	NR_037957	ENSMUSG00000097290	1300002E11Rik	1500026P21Rik	RIKEN cDNA 1300002E11 gene	ncRNA	0.000000	0.318408	
mm_2202.1	chr1	89580093	89580293	+	1	NA	NA	NA	103699	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.190000	0.815920	
mm_11576.1	chr2	32916505	32916705	+	1	NA	NA	NA	40471	NM_146119	227737	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.000000	0.348259	
mm_27307.1	chr3	50366321	50366521	-	1	NA	NA	NA	77192	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.343284	
mm_42185.1	chr5	112267451	112267651	+	1	NA	NA	NA	-9140	NM_001326590	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.025000	0.522388	3(GACCTTATAAAC,-,0.00),5(CCTTATAAACCC,+,0.00)
mm_19694.1	chr2	103605708	103605908	-	1	NA	NA	NA	39498	NM_178890	99382	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.005000	0.412935	
mm_153726.1	chr19	44407564	44407764	-	1	NA	NA	NA	45	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.025000	0.592040	14(GCCGATAAAAGG,-,0.00),70(CCCTTTAAAATC,+,0.00),71(CCTTTAAAATCC,+,0.00)
mm_14652.1	chr2	136915271	136915471	+	1	NA	NA	NA	16020	NM_001038641	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.005000	0.348259	
mm_65483.1	chr7	25651254	25651454	-	1	NA	NA	NA	7407	NM_007533	12039	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	0.030000	0.512438	
mm_26498.1	chr3	145652269	145652469	+	1	NA	NA	NA	-2384	NM_010516	16007	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0.040000	0.592040	-34(GTCCATTTAAAG,-,0.00),-32(CCATTTAAAGCA,+,0.00)
mm_49847.1	chr6	38354674	38354874	+	1	NA	NA	NA	-171	NM_028421	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.075000	0.547264	
mm_134461.1	chr16	18426307	18426507	-	1	NA	NA	NA	-10	NM_013711	26462	Mm.390906	NM_013711	ENSMUSG00000075704	Txnrd2	AA118373|ESTM573010|TGR|Tr3|Trxr2|Trxrd2	thioredoxin reductase 2	protein-coding	0.120000	0.721393	
mm_125610.1	chr15	61389536	61389736	+	1	NA	NA	NA	384815	NR_040350	432956	Mm.404918	NR_040350		D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	0.000000	0.373134	-32(TGCCATAAAAGT,-,0.00)
mm_108114.1	chr12	75393916	75394116	+	1	NA	NA	NA	22765	NM_175644	217674	Mm.252250	NM_175644	ENSMUSG00000048982	Gphb5	OGH|Zlut1	glycoprotein hormone beta 5	protein-coding	0.055000	0.467662	
mm_7716.1	chr1	130647371	130647571	-	1	NA	NA	NA	14147	NM_007576	12269	Mm.306720	NM_007576	ENSMUSG00000026405	C4bp	AI195242|C4bpa	complement component 4 binding protein	protein-coding	0.015000	0.353234	-5(TTTTATATAGGA,+,0.00)
mm_150962.1	chr19	46463843	46464043	+	1	NA	NA	NA	-37705	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.000000	0.308458	
mm_72139.1	chr8	71957623	71957823	+	1	NA	NA	NA	6657	NM_001164581	234413	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding	0.000000	0.328358	
mm_10254.1	chr2	9313265	9313465	+	1	NA	NA	NA	123850	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.005000	0.328358	-65(GACTTTTTAGGG,-,0.00),-63(CTTTTTAGGGGG,+,0.00)
mm_97242.1	chr11	75692511	75692711	+	1	NA	NA	NA	13352	NM_001277221	12928	Mm.280125	NM_133656	ENSMUSG00000017776	Crk	Crk-I|Crk-II|Crk-III|Crk3|CrkIII|Crko|c-Crk|p38	v-crk avian sarcoma virus CT10 oncogene homolog	protein-coding	0.040000	0.592040	52(GCCCATTTATGC,-,0.00),54(CCATTTATGCCA,+,0.00)
mm_144148.1	chr18	5034993	5035193	+	1	NA	NA	NA	-11496	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.015000	0.527363	
mm_168535.1	chr1	161036290	161036490	+	1	NA	NA	NA	1224	NR_002840	14455	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	0.015000	0.477612	
mm_139362.1	chr17	50539378	50539578	+	1	NA	NA	NA	29931	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.000000	0.248756	
mm_17160.1	chr2	25234139	25234339	-	1	NA	NA	NA	-5	NM_080854	142681	Mm.346652	NM_080854	ENSMUSG00000006469	Slc34a3	AI649385|Npt2c|Npt2c-v1|NptIIc|naPi-2c	solute carrier family 34 (sodium phosphate), member 3	protein-coding	0.010000	0.597015	
mm_33673.1	chr4	133194420	133194620	+	1	NA	NA	NA	-1135	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.020000	0.631841	
mm_81638.1	chr9	110880257	110880457	+	1	NA	NA	NA	35	NM_001146060	235633	Mm.86338	NM_146228	ENSMUSG00000044037	Als2cl	79H19D|79H19E|BC022645|D930044G19Rik|mRn.49018	ALS2 C-terminal like	protein-coding	0.095000	0.706468	
mm_137603.1	chr17	28218115	28218315	+	1	NA	NA	NA	10437	NM_027185	23853	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0.015000	0.487562	-6(TTTTTTAAAGTG,+,0.00)
mm_65015.1	chr7	17094956	17095156	-	1	NA	NA	NA	21016	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.015000	0.447761	
mm_114348.1	chr13	60934675	60934875	+	1	NA	NA	NA	1791	NM_001145799	13024	Mm.482089	NM_007796	ENSMUSG00000044258	Ctla2a	Ctla-2a	cytotoxic T lymphocyte-associated protein 2 alpha	protein-coding	0.005000	0.407960	
mm_28944.1	chr3	99253490	99253690	-	1	NA	NA	NA	-170	NM_009323	21384	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0.045000	0.512438	
mm_131427.1	chr16	14906551	14906751	+	1	NA	NA	NA	5	NM_025769	66793	Mm.100270	NM_025769	ENSMUSG00000068617	Efcab1	4930449A16Rik|5430404L10Rik	EF hand calcium binding domain 1	protein-coding	0.045000	0.572139	
mm_44306.1	chr5	8996991	8997191	-	1	NA	NA	NA	55	NM_023733	74114	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.075000	0.676617	
mm_101991.1	chr11	50931527	50931727	-	1	NA	NA	NA	8	NM_013744	27274	Mm.74670	NM_013744	ENSMUSG00000020335	Zfp354b	Kid2|Tcf17l1|Znf354b	zinc finger protein 354B	protein-coding	0.035000	0.567164	
mm_61880.1	chr7	89632388	89632588	+	1	NA	NA	NA	-330	NM_181407	109264	Mm.334011	NM_181407	ENSMUSG00000030621	Me3	1700020C08Rik|B230207H15Rik	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding	0.025000	0.542289	
mm_123843.1	chr14	70659686	70659886	-	1	NA	NA	NA	-6702	NM_181345	328440	Mm.347749	NM_181345	ENSMUSG00000047911	Npm2	-	nucleophosmin/nucleoplasmin 2	protein-coding	0.050000	0.497512	
mm_106644.1	chr11	121039332	121039532	-	1	NA	NA	NA	46	NM_009854	12516	Mm.4100	NM_009854	ENSMUSG00000025163	Cd7	-	CD7 antigen	protein-coding	0.015000	0.517413	
mm_94687.1	chr11	19924171	19924371	+	1	NA	NA	NA	-171	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.035000	0.517413	
mm_104996.1	chr11	100355987	100356187	-	1	NA	NA	NA	54	NM_177981	15114	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.085000	0.671642	
mm_2140.1	chr1	88087776	88087976	+	1	NA	NA	NA	-7125	NM_201642	394432	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	0.005000	0.557214	
mm_135638.1	chr16	52354180	52354380	-	1	NA	NA	NA	98801	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.388060	
mm_115367.1	chr13	112993755	112993955	+	1	NA	NA	NA	-13	NM_001037914	622408	Mm.360976	NM_001037914	ENSMUSG00000074651	Mcidas	EG622408|Gm6320|Idas|Mci|Mcin	multiciliate differentiation and DNA synthesis associated cell cycle protein	protein-coding	0.095000	0.716418	
mm_122533.1	chr14	47385516	47385716	-	1	NA	NA	NA	11756	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.045000	0.552239	
mm_118635.1	chr14	21345483	21345683	+	1	NA	NA	NA	-154187	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.000000	0.238806	
mm_81373.1	chr9	108854000	108854200	+	1	NA	NA	NA	57	NM_134420	171429	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.045000	0.597015	
mm_67979.1	chr7	100658278	100658478	-	1	NA	NA	NA	78	NM_001163185	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.045000	0.621891	
mm_16626.1	chr2	5677439	5677639	-	1	NA	NA	NA	-1493	NM_001290376	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.005000	0.427861	11(CCCCATATATGC,-,0.00)
mm_42389.1	chr5	114936880	114937080	+	1	NA	NA	NA	-5222	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.040000	0.547264	
mm_126942.1	chr15	92051062	92051262	+	1	NA	NA	NA	-3	NM_001159648	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.045000	0.601990	
mm_74568.1	chr8	11009380	11009580	-	1	NA	NA	NA	-1050	NM_001081212	384783	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.155000	0.776119	
mm_3981.1	chr1	164263401	164263601	+	1	NA	NA	NA	-12097	NM_029115	74895	Mm.167258	NM_029115	ENSMUSG00000026578	Ccdc181	4930455F23Rik|AI427889	coiled-coil domain containing 181	protein-coding	0.035000	0.512438	
mm_153850.1	chr19	46348885	46349085	-	1	NA	NA	NA	3	NR_040418	75579	Mm.436708	NR_040418		2310034G01Rik	-	RIKEN cDNA 2310034G01 gene	ncRNA	0.160000	0.731343	
mm_96995.1	chr11	70700511	70700711	+	1	NA	NA	NA	63	NM_153103	16562	Mm.99996	NM_153103	ENSMUSG00000020821	Kif1c	B430105J22Rik|D11Bwg1349e|Ltxs1|Orch3	kinesin family member 1C	protein-coding	0.150000	0.781095	
mm_154190.1	chr19	58822427	58822627	-	1	NA	NA	NA	-28113	NM_026208	67507	Mm.27027	NM_026208	ENSMUSG00000026931	1700019N19Rik	-	RIKEN cDNA 1700019N19 gene	protein-coding	0.030000	0.562189	
mm_129762.1	chr15	82407095	82407295	-	1	NA	NA	NA	-1	NM_010005	13101	Mm.174372	NM_010005	ENSMUSG00000094806	Cyp2d10	AI303445|Cyp2d|P450-2D	cytochrome P450, family 2, subfamily d, polypeptide 10	protein-coding	0.000000	0.537313	-33(TCCTTTATAAGG,-,0.00),-31(CTTTATAAGGCA,+,0.00)
mm_89522.1	chr10	94356949	94357149	+	1	NA	NA	NA	-58346	NR_033209	215472	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	0.040000	0.437811	
mm_168218.1	chr10	76440110	76440310	-	1	NA	NA	NA	2702	NM_008787	18541	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	0.050000	0.567164	
mm_133852.1	chr16	96258505	96258705	+	1	NA	NA	NA	-22427	NM_033149	93961	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	0.020000	0.467662	
mm_142901.1	chr17	52162564	52162764	-	1	NA	NA	NA	279937	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.010000	0.457711	
mm_11769.1	chr2	38587811	38588011	+	1	NA	NA	NA	55995	NM_011187	19177	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0.015000	0.393035	
mm_47401.1	chr5	123130729	123130929	-	1	NA	NA	NA	1800	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.015000	0.537313	
mm_75323.1	chr8	42083209	42083409	-	1	NA	NA	NA	256042	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	0.015000	0.492537	
mm_108166.1	chr12	76371034	76371234	+	1	NA	NA	NA	868	NM_178744	268564	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.120000	0.711443	
mm_78090.1	chr9	18292203	18292403	+	1	NA	NA	NA	36	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.095000	0.597015	
mm_82107.1	chr9	123112799	123112999	+	1	NA	NA	NA	306	NM_026917	69035	Mm.28300	NM_026917	ENSMUSG00000025786	Zdhhc3	1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373	zinc finger, DHHC domain containing 3	protein-coding	0.090000	0.671642	
mm_66109.1	chr7	31041654	31041854	-	1	NA	NA	NA	85	NM_001111073	18301	Mm.1870	NM_008761	ENSMUSG00000009687	Fxyd5	EF-8|Oit2|RIC	FXYD domain-containing ion transport regulator 5	protein-coding	0.030000	0.626866	
mm_85205.1	chr9	96787648	96787848	-	1	NA	NA	NA	22186	NR_102296	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	0.015000	0.477612	
mm_165893.1	chr4	44771341	44771541	+	1	NA	NA	NA	14882	NM_138590	319885	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	0.000000	0.442786	
mm_69663.1	chr7	139980313	139980513	-	1	NA	NA	NA	-1658	NM_001347613	381933	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0.020000	0.492537	
mm_94208.1	chr11	3105440	3105640	+	1	NA	NA	NA	-18481	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.020000	0.447761	-31(TGCTTTAAAAGT,-,0.00),-30(GCTTTAAAAGTG,+,0.00)
mm_7659.1	chr1	128413926	128414126	-	1	NA	NA	NA	3390	NM_177445	226414	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	0.010000	0.402985	-33(CTACTTAAAAGC,-,0.00)
mm_106349.1	chr11	118393403	118393603	-	1	NA	NA	NA	8428	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.025000	0.517413	
mm_171405.1	chr4	126070207	126070407	-	1	NA	NA	NA	11742	NM_172701	230751	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	0.055000	0.562189	
mm_61854.1	chr7	88302169	88302369	+	1	NA	NA	NA	24184	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.020000	0.383085	
mm_139538.1	chr17	56709911	56710111	+	1	NA	NA	NA	6910	NM_178926	106639	Mm.37290	NM_178926	ENSMUSG00000054723	Vmac	AI662250	vimentin-type intermediate filament associated coiled-coil protein	protein-coding	0.015000	0.616915	
mm_120903.1	chr14	75962331	75962531	+	1	NA	NA	NA	7428	NM_026214	67516	Mm.390712	NM_026214	ENSMUSG00000046523	Kctd4	2210017A09Rik|AU017169	potassium channel tetramerisation domain containing 4	protein-coding	0.030000	0.487562	
mm_22960.1	chr3	32510503	32510703	+	1	NA	NA	NA	11	NM_144519	67778	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	0.110000	0.771144	
mm_161463.1	chr15	77643186	77643386	-	1	NA	NA	NA	0	NM_001143686	328563	Mm.17957	NM_001143686	ENSMUSG00000091694	Apol11b	A330102K04Rik	apolipoprotein L 11b	protein-coding	0.005000	0.482587	
mm_127000.1	chr15	95790792	95790992	+	1	NA	NA	NA	49	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.120000	0.721393	
mm_107319.1	chr12	31270141	31270341	+	1	NA	NA	NA	4947	NM_008482	16777	Mm.172674	NM_008482	ENSMUSG00000002900	Lamb1	C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1	laminin B1	protein-coding	0.015000	0.343284	
mm_143030.1	chr17	56609712	56609912	-	1	NA	NA	NA	-41	NM_153152	224904	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0.065000	0.567164	
mm_24691.1	chr3	95006496	95006696	+	1	NA	NA	NA	2428	NR_105980	102465613		NR_105980	ENSMUSG00000099033	Mir7013	Gm27488|mmu-mir-7013	microRNA 7013	ncRNA	0.000000	0.388060	
mm_101552.1	chr11	33755005	33755205	-	1	NA	NA	NA	88480	NM_027398	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.035000	0.542289	
mm_26749.1	chr3	7613599	7613799	-	1	NA	NA	NA	61	NM_008371	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.030000	0.447761	
mm_131119.1	chr16	5382285	5382485	+	1	NA	NA	NA	-126429	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.010000	0.547264	
mm_170413.1	chr18	68692034	68692234	+	1	NA	NA	NA	-47266	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0.060000	0.457711	-97(GACTTTTAAAGT,-,0.00),74(AACTTTAAATGG,-,0.00)
mm_33778.1	chr4	134510939	134511139	+	1	NA	NA	NA	40	NM_001081099	69885	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	0.105000	0.691542	
mm_38494.1	chr4	140979090	140979290	-	1	NA	NA	NA	-7683	NM_029097	74772	Mm.205625	NM_029097	ENSMUSG00000036622	Atp13a2	1110012E06Rik|AA589443	ATPase type 13A2	protein-coding	0.025000	0.477612	
mm_134384.1	chr16	17201399	17201599	-	1	NA	NA	NA	-7	NM_009456	22195	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0.050000	0.616915	
mm_559.1	chr1	38021671	38021871	+	1	NA	NA	NA	23761	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.010000	0.427861	
mm_35128.1	chr4	11235455	11235655	-	1	NA	NA	NA	18704	NM_178112	72656	Mm.246713	NM_178112	ENSMUSG00000040738	Ints8	2810013E07Rik|AV063769|D130008D20Rik	integrator complex subunit 8	protein-coding	0.010000	0.338308	9(CGGTATTAAGGG,-,0.00)
mm_106501.1	chr11	120378636	120378836	-	1	NA	NA	NA	10	NM_027980	71885	Mm.274890	NM_027980	ENSMUSG00000025384	Faap100	2310003H01Rik	Fanconi anemia core complex associated protein 100	protein-coding	0.155000	0.776119	
mm_172061.1	chr6	132731888	132732088	-	1	NA	NA	NA	5998	NM_207020	353325	Mm.377892	NM_207020	ENSMUSG00000071149	Tas2r115	T2R15|Tas2r15|mGR15|mt2r49	taste receptor, type 2, member 115	protein-coding	0.010000	0.507463	-22(TCCTTTATAAAG,-,0.00),-20(CTTTATAAAGCA,+,0.00)
mm_107853.1	chr12	69447610	69447810	+	1	NA	NA	NA	27840	NR_038060	76062	Mm.380755	NR_038060		5830428M24Rik	100040862|Gm3007	RIKEN cDNA 5830428M24 gene	ncRNA	0.020000	0.412935	
mm_153230.1	chr19	34879265	34879465	-	1	NA	NA	NA	90	NM_001114339	75735	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	0.045000	0.557214	
mm_108697.1	chr12	86947300	86947500	+	1	NA	NA	NA	57	NM_001289432	217732	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.105000	0.691542	
mm_158224.1	chrX	106011783	106011983	-	1	NA	NA	NA	16	NM_001190409	67075	Mm.275943	NM_025952	ENSMUSG00000031232	Magt1	2410001C15Rik|2610529C04Rik|2810482I07Rik|IAG2|IAP	magnesium transporter 1	protein-coding	0.100000	0.597015	-50(TTTTTTAAAAGC,-,0.00),-49(TTTTTAAAAGCG,+,0.00)
mm_55823.1	chr6	83070269	83070469	-	1	NA	NA	NA	-144	NM_009392	21909	Mm.37	NM_009392	ENSMUSG00000068327	Tlx2	Enx|Hox11L.1|Hox11l1|NCX|Ncx1|Tlx1l1|Tlx1l2	T cell leukemia, homeobox 2	protein-coding	0.080000	0.716418	
mm_41893.1	chr5	105518652	105518852	+	1	NA	NA	NA	-719	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.040000	0.537313	50(GGGTCTTAAGGC,-,0.00)
mm_107284.1	chr12	29783755	29783955	+	1	NA	NA	NA	-97410	NR_046080	328075	Mm.447832	NR_046080		C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	0.015000	0.467662	
mm_48951.1	chr6	4540489	4540689	+	1	NA	NA	NA	34971	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.020000	0.398010	
mm_28907.1	chr3	98645441	98645641	-	1	NA	NA	NA	-7	NM_008295	15496	Mm.17910	NM_008295	ENSMUSG00000038092	Hsd3b5	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 5	protein-coding	0.005000	0.437811	
mm_94335.1	chr11	4637623	4637823	+	1	NA	NA	NA	-70	NM_029291	75452	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	0.065000	0.661692	
mm_119584.1	chr14	50925106	50925306	+	1	NA	NA	NA	257	NM_009687	11792	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	0.100000	0.616915	
mm_51688.1	chr6	86525799	86525999	+	1	NA	NA	NA	266	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.090000	0.631841	
mm_123865.1	chr14	72539503	72539703	-	1	NA	NA	NA	170400	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.000000	0.393035	
mm_21717.1	chr2	164613515	164613715	-	1	NA	NA	NA	11	NM_001080550	277343	Mm.383292	NM_001080550	ENSMUSG00000070533	Wfdc8	Gm706	WAP four-disulfide core domain 8	protein-coding	0.025000	0.606965	
mm_171177.1	chr3	35131149	35131349	-	1	NA	NA	NA	-208598	NR_105799	102466155		NR_105799	ENSMUSG00000098862	Mir6378	Gm27706|mmu-mir-6378	microRNA 6378	ncRNA	0.065000	0.661692	
mm_89476.1	chr10	93540540	93540740	+	1	NA	NA	NA	8	NM_175488	237465	Mm.477086	NM_175488	ENSMUSG00000036168	Ccdc38	4933417K05Rik	coiled-coil domain containing 38	protein-coding	0.065000	0.626866	
mm_57745.1	chr6	129097166	129097366	-	1	NA	NA	NA	3637	NM_153506	232409	Mm.30870	NM_153506	ENSMUSG00000030155	Clec2e	Clra|clr-a	C-type lectin domain family 2, member e	protein-coding	0.010000	0.393035	
mm_161066.1	chr12	73113359	73113559	-	1	NA	NA	NA	-214	NM_011382	20474	Mm.249575	NM_011382	ENSMUSG00000034460	Six4	AI047561|AREC3|TrexBF	sine oculis-related homeobox 4	protein-coding	0.065000	0.577114	
mm_13663.1	chr2	114061070	114061270	+	1	NA	NA	NA	6774	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.000000	0.318408	
mm_21500.1	chr2	163472498	163472698	-	1	NA	NA	NA	31	NM_173397	228859	Mm.242917	NM_173397	ENSMUSG00000048486	Fitm2	AI414861|D930001I22Rik|Fit2	fat storage-inducing transmembrane protein 2	protein-coding	0.110000	0.706468	
mm_18930.1	chr2	76746969	76747169	-	1	NA	NA	NA	71754	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.447761	
mm_55242.1	chr6	52548775	52548975	-	1	NA	NA	NA	56424	NR_046049	74304	Mm.490579	NR_046049	ENSMUSG00000107895	1700094M24Rik	-	RIKEN cDNA 1700094M24 gene	ncRNA	0.030000	0.502488	
mm_144787.1	chr18	35873404	35873604	+	1	NA	NA	NA	43686	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.110000	0.706468	
mm_40389.1	chr5	52741572	52741772	+	1	NA	NA	NA	98	NM_025951	67073	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	0.130000	0.771144	
mm_21188.1	chr2	155314485	155314685	-	1	NA	NA	NA	38221	NR_046364	66734	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0.010000	0.492537	
mm_28498.1	chr3	92484522	92484722	-	1	NA	NA	NA	1259	NM_009264	20753	Mm.331191	NM_009264	ENSMUSG00000050359	Sprr1a	AI528815|SPR1a|mSPRR1A	small proline-rich protein 1A	protein-coding	0.000000	0.606965	
mm_120630.1	chr14	70466440	70466640	+	1	NA	NA	NA	9023	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.020000	0.442786	
mm_6602.1	chr1	75317441	75317641	-	1	NA	NA	NA	96	NM_001110831	13437	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	0.110000	0.721393	
mm_167177.1	chr7	140203580	140203780	+	1	NA	NA	NA	-912	NM_001011814	258055	Mm.377339	NM_001011814	ENSMUSG00000050366	Olfr524	MOR103-14P	olfactory receptor 524	protein-coding	0.005000	0.512438	
mm_73861.1	chr8	118283696	118283896	+	1	NA	NA	NA	185	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.070000	0.601990	
mm_116813.1	chr13	54399149	54399349	-	1	NA	NA	NA	27900	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.030000	0.537313	
mm_112703.1	chr13	17967240	17967440	+	1	NA	NA	NA	-23123	NM_019491	56044	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0.010000	0.422886	
mm_122212.1	chr14	32145617	32145817	-	1	NA	NA	NA	3694	NM_020597	17695	Mm.2540	NM_020597	ENSMUSG00000021907	Msmb	PIP|PSP94|beta-MSP	beta-microseminoprotein	protein-coding	0.010000	0.537313	-98(GCTTTTAAGCGG,+,0.00)
mm_163480.1	chr12	105784973	105785173	-	1	NA	NA	NA	376	NM_001347440	18789	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0.135000	0.776119	
mm_140954.1	chr17	24614303	24614503	-	1	NA	NA	NA	18224	NM_011647	22084	Mm.30435	NM_011647	ENSMUSG00000002496	Tsc2	Nafld|Tcs2	tuberous sclerosis 2	protein-coding	0.015000	0.557214	
mm_82204.1	chr9	124102038	124102238	+	1	NA	NA	NA	-45	NM_009915	12772	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.005000	0.398010	
mm_73582.1	chr8	109854910	109855110	+	1	NA	NA	NA	-13593	NM_001122594	244650	Mm.23494	NM_001122594	ENSMUSG00000031732	Phlpp2	AI481772|C130044A18Rik|Phlppl	PH domain and leucine rich repeat protein phosphatase 2	protein-coding	0.010000	0.393035	
mm_158189.1	chrX	104413767	104413967	-	1	NA	NA	NA	-21	NM_009592	11306	Mm.426128	NM_009592	ENSMUSG00000031333	Abcb7	AA517758|AU019072|Abc7	ATP-binding cassette, sub-family B (MDR/TAP), member 7	protein-coding	0.105000	0.606965	
mm_153673.1	chr19	44396103	44396303	-	1	NA	NA	NA	11506	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.025000	0.487562	
mm_55034.1	chr6	48987237	48987437	-	1	NA	NA	NA	476	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.030000	0.532338	
mm_153750.1	chr19	45046532	45046732	-	1	NA	NA	NA	-860	NM_001195265	100503041	Mm.329877	NM_177605	ENSMUSG00000074818	Pdzd7	9130207N01|EG435601|Pdzk7	PDZ domain containing 7	protein-coding	0.080000	0.646766	
mm_39167.1	chr4	155654915	155655115	-	1	NA	NA	NA	-1631	NM_011985	26561	Mm.29373	NM_011985	ENSMUSG00000029061	Mmp23	CA-MMP	matrix metallopeptidase 23	protein-coding	0.060000	0.661692	
mm_136642.1	chr17	5803817	5804017	+	1	NA	NA	NA	4427	NR_045080	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.015000	0.457711	
mm_7261.1	chr1	94035387	94035587	-	1	NA	NA	NA	14994	NM_001310769	241159	Mm.214565	NM_173772	ENSMUSG00000034000	Neu4	9330166I04	sialidase 4	protein-coding	0.050000	0.611940	
mm_49861.1	chr6	38551363	38551563	+	1	NA	NA	NA	129	NM_001170848	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.135000	0.711443	
mm_122877.1	chr14	54926246	54926446	-	1	NA	NA	NA	442	NM_010112	13644	Mm.236438	NM_010112	ENSMUSG00000022203	Efs	-	embryonal Fyn-associated substrate	protein-coding	0.040000	0.621891	
mm_92276.1	chr10	71237916	71238116	-	1	NA	NA	NA	28	NM_009360	21780	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	0.125000	0.676617	
mm_142367.1	chr17	44105840	44106040	-	1	NA	NA	NA	-132	NM_199016	224794	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90|mKIAA0879	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	0.125000	0.751244	
mm_73634.1	chr8	110727021	110727221	+	1	NA	NA	NA	1395	NM_001310591	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.080000	0.661692	
mm_135658.1	chr16	52402391	52402591	-	1	NA	NA	NA	50590	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.278607	
mm_77165.1	chr8	111689096	111689296	-	1	NA	NA	NA	478	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.025000	0.522388	
mm_121827.1	chr14	20479978	20480178	-	1	NA	NA	NA	55	NM_001110794	11750	Mm.280231	NM_009674	ENSMUSG00000021814	Anxa7	AI265384|AI316497|Anx7|synexin	annexin A7	protein-coding	0.050000	0.587065	
mm_160999.1	chr11	115979281	115979481	+	1	NA	NA	NA	4656	NM_133663	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.015000	0.587065	
mm_43693.1	chr5	139150729	139150929	+	1	NA	NA	NA	606	NM_001081265	433956	Mm.5547	NM_001081265	ENSMUSG00000025857	Dnaaf5	BC053401|C76907|Heatr2	dynein, axonemal assembly factor 5	protein-coding	0.110000	0.661692	
mm_142761.1	chr17	49113399	49113599	-	1	NA	NA	NA	34	NR_038141	69311	Mm.46140	NR_038141	ENSMUSG00000101012	1700008K24Rik	-	RIKEN cDNA 1700008K24 gene	ncRNA	0.015000	0.532338	
mm_28567.1	chr3	93444897	93445097	-	1	NA	NA	NA	2667	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.040000	0.606965	
mm_113927.1	chr13	49608939	49609139	+	1	NA	NA	NA	968	NM_008760	18295	Mm.4258	NM_008760	ENSMUSG00000021390	Ogn	3110079A16Rik|OG|OIF|SLRR3A|mimecan|mimican	osteoglycin	protein-coding	0.005000	0.358209	33(GCTTTTAAAAAC,+,0.00),33(GCTTTTAAAAAC,-,0.00)
mm_37505.1	chr4	123750204	123750404	-	1	NA	NA	NA	-5	NM_023423	68050	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	0.105000	0.721393	
mm_21282.1	chr2	156953271	156953471	-	1	NA	NA	NA	38740	NM_013865	29812	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0.015000	0.492537	
mm_91636.1	chr10	42270244	42270444	-	1	NA	NA	NA	6398	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.010000	0.308458	
mm_171640.1	chr4	28461399	28461599	+	1	NA	NA	NA	-351632	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.030000	0.562189	
mm_31268.1	chr4	45320324	45320524	+	1	NA	NA	NA	179	NM_025513	66362	Mm.275788	NM_025513	ENSMUSG00000028322	Exosc3	2310005D06Rik|AI593501|Rrp40	exosome component 3	protein-coding	0.110000	0.691542	
mm_159869.1	chr5	146009519	146009719	-	1	NA	NA	NA	-1	NR_030782	56388	Mm.301900	NM_019792	ENSMUSG00000029630	Cyp3a25	AI327008	cytochrome P450, family 3, subfamily a, polypeptide 25	protein-coding	0.005000	0.507463	
mm_124981.1	chr15	20744137	20744337	+	1	NA	NA	NA	-77487	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.005000	0.368159	
mm_12306.1	chr2	69112461	69112661	+	1	NA	NA	NA	-23239	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.010000	0.452736	
mm_61623.1	chr7	80198324	80198524	+	1	NA	NA	NA	11583	NM_013659	20352	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.080000	0.701493	
mm_123422.1	chr14	64417686	64417886	-	1	NA	NA	NA	-507	NM_001347639	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.015000	0.462687	-72(AATTTTAAAAGG,-,0.00)
mm_11382.1	chr2	31245995	31246195	+	1	NA	NA	NA	172	NM_019681	14299	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.175000	0.830846	
mm_3378.1	chr1	139422130	139422330	+	1	NA	NA	NA	-153	NM_172643	226470	Mm.119711	NM_172643	ENSMUSG00000033964	Zbtb41	8430415N23Rik|9430031N01|9830132G07Rik|AI316857	zinc finger and BTB domain containing 41	protein-coding	0.140000	0.766169	
mm_170705.1	chr2	140105414	140105614	+	1	NA	NA	NA	-38709	NR_110351	75812	Mm.293449	NM_175225	ENSMUSG00000039033	Tasp1	4930485D02Rik|AW986064	taspase, threonine aspartase 1	protein-coding	0.025000	0.522388	-12(GTCTTTAAAAAG,-,0.00),-10(CTTTAAAAAGCA,+,0.00)
mm_119970.1	chr14	55540261	55540461	+	1	NA	NA	NA	95	NM_028994	74551	Mm.29856	NM_028994	ENSMUSG00000040618	Pck2	1810010O14Rik|9130022B02Rik|PEPCK-M	phosphoenolpyruvate carboxykinase 2 (mitochondrial)	protein-coding	0.065000	0.651741	-5(TCCTTTTTAAGC,-,0.00),-3(CTTTTTAAGCGC,+,0.00)
mm_27171.1	chr3	33844184	33844384	-	1	NA	NA	NA	26	NM_026222	51938	Mm.275710	NM_026222	ENSMUSG00000027676	Ccdc39	4921507O14Rik|AI447426|AI844750|D3Ertd789e|b2b1304Clo|b2b1735Clo|b2b2025.1Clo	coiled-coil domain containing 39	protein-coding	0.050000	0.552239	
mm_156963.1	chrX	169989868	169990068	+	1	NA	NA	NA	-11051	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.055000	0.492537	
mm_94893.1	chr11	28854211	28854411	+	1	NA	NA	NA	1106	NM_146015	216616	Mm.44176	NM_146015	ENSMUSG00000020467	Efemp1	-	epidermal growth factor-containing fibulin-like extracellular matrix protein 1	protein-coding	0.005000	0.427861	
mm_45229.1	chr5	53589160	53589360	-	1	NA	NA	NA	-1086	NM_009035	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.145000	0.736318	
mm_99370.1	chr11	101936579	101936779	+	1	NA	NA	NA	-15742	NR_045806	73887	Mm.159084	NR_045806	ENSMUSG00000071818	4930417O22Rik	-	RIKEN cDNA 4930417O22 gene	ncRNA	0.020000	0.477612	
mm_63970.1	chr7	139944601	139944801	+	1	NA	NA	NA	845	NM_009482	22286	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	0.080000	0.636816	
mm_51623.1	chr6	85441611	85441811	+	1	NA	NA	NA	9591	NM_001163427	73327	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	0.015000	0.537313	
mm_150616.1	chr19	40965667	40965867	+	1	NA	NA	NA	28768	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.005000	0.462687	-34(GGCTATATATGC,-,0.00)
mm_122676.1	chr14	52009094	52009294	-	1	NA	NA	NA	5364	NM_001253695	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.070000	0.651741	
mm_49076.1	chr6	6248584	6248784	+	1	NA	NA	NA	25	NR_136905	101056138	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0.025000	0.487562	
mm_126064.1	chr15	77017620	77017820	+	1	NA	NA	NA	5007	NM_001164048	17189	Mm.404074	NM_013593	ENSMUSG00000018893	Mb	AI325109	myoglobin	protein-coding	0.010000	0.507463	
mm_134136.1	chr16	10683439	10683639	-	1	NA	NA	NA	101997	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.010000	0.492537	
mm_49743.1	chr6	34745802	34746002	+	1	NA	NA	NA	-34530	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.025000	0.477612	
mm_126033.1	chr15	76870850	76871050	+	1	NA	NA	NA	485	NM_001007568	71591	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	0.080000	0.636816	
mm_13117.1	chr2	91663837	91664037	+	1	NA	NA	NA	10729	NM_146124	228359	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	0.005000	0.502488	
mm_86640.1	chr10	14108728	14108928	+	1	NA	NA	NA	142449	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.000000	0.278607	
mm_158230.1	chrX	106255272	106255472	-	1	NA	NA	NA	0	NM_001033424	331491	Mm.426150	NM_001033424	ENSMUSG00000073012	Fnd3c2	5031408O05Rik|Gm775	fibronectin type III domain containing 3C2	protein-coding	0.010000	0.502488	-33(GGCTATAAAACC,-,0.00),30(CAGCATAAAAAG,-,0.00)
mm_138165.1	chr17	34263140	34263340	+	1	NA	NA	NA	13	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.000000	0.532338	
mm_153284.1	chr19	37263825	37264025	-	1	NA	NA	NA	170	NR_040299	77059	Mm.251476	NR_040298		4931408D14Rik	-	RIKEN cDNA 4931408D14 gene	ncRNA	0.045000	0.517413	
mm_1251.1	chr1	62816560	62816760	+	1	NA	NA	NA	-21928	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.010000	0.462687	
mm_72733.1	chr8	85083213	85083413	+	1	NA	NA	NA	44	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.070000	0.641791	
mm_56535.1	chr6	99628844	99629044	-	1	NA	NA	NA	37827	NM_025829	66892	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.010000	0.522388	
mm_7977.1	chr1	134093815	134094015	-	1	NA	NA	NA	-14760	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.020000	0.532338	
mm_161826.1	chr17	79052053	79052253	+	1	NA	NA	NA	247	NM_001316729	70536	Mm.293870	NM_027455	ENSMUSG00000024084	Qpct	5730422A13Rik	glutaminyl-peptide cyclotransferase (glutaminyl cyclase)	protein-coding	0.070000	0.676617	
mm_37923.1	chr4	132796275	132796475	-	1	NA	NA	NA	-11	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.090000	0.671642	
mm_82559.1	chr9	21028297	21028497	-	1	NA	NA	NA	-976	NM_023892	78369	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.005000	0.422886	
mm_22333.1	chr2	180708957	180709157	-	1	NA	NA	NA	942	NM_177852	23856	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.020000	0.447761	
mm_112622.1	chr13	15613744	15613944	+	1	NA	NA	NA	150121	NM_008130	14634	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0.010000	0.412935	-98(CTTTATATAAGG,+,0.00),-98(CTTTATATAAGG,-,0.00)
mm_99010.1	chr11	98836748	98836948	+	1	NA	NA	NA	63	NM_001080925	268480	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0.105000	0.751244	
mm_71094.1	chr8	34821438	34821638	+	1	NA	NA	NA	13928	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.015000	0.502488	
mm_123196.1	chr14	59142792	59142992	-	1	NA	NA	NA	1	NM_026461	67932	Mm.65550	NM_026461	ENSMUSG00000021977	1700129C05Rik	-	RIKEN cDNA 1700129C05 gene	protein-coding	0.010000	0.517413	
mm_5643.1	chr1	40475688	40475888	-	1	NA	NA	NA	9782	NM_008365	16182	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0.010000	0.388060	70(GTCTTTATAAAG,-,0.00),72(CTTTATAAAGAA,+,0.00)
mm_105782.1	chr11	109797222	109797422	-	1	NA	NA	NA	30724	NM_027038	69324	Mm.31700	NM_027038	ENSMUSG00000020617	1700012B07Rik	1700069D21Rik	RIKEN cDNA 1700012B07 gene	protein-coding	0.035000	0.542289	
mm_35351.1	chr4	32258059	32258259	-	1	NA	NA	NA	-159276	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.030000	0.477612	
mm_69407.1	chr7	132323439	132323639	-	1	NA	NA	NA	-6384	NM_029935	77590	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.015000	0.462687	
mm_165034.1	chr19	35783445	35783645	+	1	NA	NA	NA	273815	NM_001347442	15566	Mm.254266	NM_008315	ENSMUSG00000024798	Htr7	5-HT7	5-hydroxytryptamine (serotonin) receptor 7	protein-coding	0.005000	0.442786	
mm_21685.1	chr2	164431167	164431367	-	1	NA	NA	NA	11921	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.045000	0.562189	
mm_100436.1	chr11	119486094	119486294	+	1	NA	NA	NA	-5153	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.010000	0.522388	
mm_155514.1	chrX	74202316	74202516	+	1	NA	NA	NA	25157	NM_031379	83553	Mm.25057	NM_031379	ENSMUSG00000031397	Tktl1	C79967	transketolase-like 1	protein-coding	0.000000	0.388060	
mm_127065.1	chr15	97373295	97373495	+	1	NA	NA	NA	-126108	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.030000	0.562189	
mm_93904.1	chr10	126905854	126906054	-	1	NA	NA	NA	-4583	NM_001159559	68876	Mm.276769	NM_026858	ENSMUSG00000025436	Xrcc6bp1	1110068E08Rik|2410012H02Rik|Atp23	XRCC6 binding protein 1	protein-coding	0.090000	0.572139	
mm_63679.1	chr7	130552813	130553013	+	1	NA	NA	NA	-5532	NM_001162855	67872	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0.015000	0.562189	
mm_91978.1	chr10	61679952	61680152	-	1	NA	NA	NA	238	NR_126477	75539		NR_126477		1700022H01Rik	-	RIKEN cDNA 1700022H01 gene	ncRNA	0.050000	0.562189	
mm_8759.1	chr1	160352001	160352201	-	1	NA	NA	NA	-530	NM_001038621	29809	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0.030000	0.552239	
mm_131224.1	chr16	9133171	9133371	+	1	NA	NA	NA	303171	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.015000	0.482587	
mm_8045.1	chr1	135313645	135313845	-	1	NA	NA	NA	-8	NM_011590	21854	Mm.2368	NM_011590	ENSMUSG00000062580	Timm17a	17kDa|mTim17a	translocase of inner mitochondrial membrane 17a	protein-coding	0.100000	0.631841	
mm_172479.1	chr7	4948555	4948755	+	1	NA	NA	NA	15693	NM_001146329	381836	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	0.020000	0.502488	
mm_87286.1	chr10	42308323	42308523	+	1	NA	NA	NA	-31681	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.035000	0.547264	
mm_134314.1	chr16	15895614	15895814	-	1	NA	NA	NA	8428	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.000000	0.442786	
mm_98323.1	chr11	90257270	90257470	+	1	NA	NA	NA	7894	NM_026178	67468	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.025000	0.422886	26(CTCTTTAAACGG,+,0.00)
mm_138869.1	chr17	43045825	43046025	+	1	NA	NA	NA	29370	NM_178589	94185	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0.005000	0.407960	
mm_157571.1	chrX	52578040	52578240	-	1	NA	NA	NA	2297	NR_045367	100504594	Mm.447008	NR_045367	ENSMUSG00000055110	A630012P03Rik	-	RIKEN cDNA A630012P03 gene	ncRNA	0.000000	0.283582	
mm_67172.1	chr7	73557856	73558056	-	1	NA	NA	NA	439	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.115000	0.721393	
mm_132986.1	chr16	52413828	52414028	+	1	NA	NA	NA	39153	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.398010	
mm_170874.1	chr2	20899798	20899998	+	1	NA	NA	NA	67823	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.055000	0.552239	
mm_20532.1	chr2	131041203	131041403	-	1	NA	NA	NA	-905	NR_105969	102465606		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	0.150000	0.786070	
mm_34308.1	chr4	141814864	141815064	+	1	NA	NA	NA	11041	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.010000	0.457711	
mm_116150.1	chr13	29984226	29984426	-	1	NA	NA	NA	65	NM_001289920	13557	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.120000	0.786070	
mm_28591.1	chr3	94435791	94435991	-	1	NA	NA	NA	760	NM_016901	53814	Mm.440422	NM_016901	ENSMUSG00000028141	Oaz3	AZ3|Az-3|Oaz-t	ornithine decarboxylase antizyme 3	protein-coding	0.000000	0.398010	
mm_167654.1	chr9	67420100	67420300	+	1	NA	NA	NA	139503	NM_001081242	70549	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	0.005000	0.497512	
mm_150807.1	chr19	44376689	44376889	+	1	NA	NA	NA	30920	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.005000	0.467662	
mm_148406.1	chr19	3851877	3852077	+	1	NA	NA	NA	204	NR_073190	12660	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.135000	0.746269	
mm_51013.1	chr6	65022097	65022297	+	1	NA	NA	NA	-20470	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.010000	0.472637	
mm_3030.1	chr1	133754794	133754994	+	1	NA	NA	NA	-1147	NM_213616	381290	Mm.188617	NM_213616	ENSMUSG00000026463	Atp2b4	Pmca4	ATPase, Ca++ transporting, plasma membrane 4	protein-coding	0.005000	0.348259	
mm_138328.1	chr17	34850468	34850668	+	1	NA	NA	NA	177	NM_001045864	27632	Mm.653	NM_138580	ENSMUSG00000024369	Nelfe	D17H6S45|NELF-E|RD|Rdbp	negative elongation factor complex member E, Rdbp	protein-coding	0.090000	0.666667	
mm_137525.1	chr17	27342362	27342562	+	1	NA	NA	NA	-13276	NR_106076	102465701		NR_106076	ENSMUSG00000106578	Mir7217	mmu-mir-7217	microRNA 7217	ncRNA	0.025000	0.597015	
mm_24077.1	chr3	87930343	87930543	+	1	NA	NA	NA	129	NM_177663	229504	Mm.45744	NM_177663	ENSMUSG00000048039	Isg20l2	4930429N24|C80587	interferon stimulated exonuclease gene 20-like 2	protein-coding	0.160000	0.781095	
mm_66393.1	chr7	44241132	44241332	-	1	NA	NA	NA	-5110	NR_029436	70004	Mm.158317	NR_029436	ENSMUSG00000038782	1700028J19Rik	-	RIKEN cDNA 1700028J19 gene	ncRNA	0.005000	0.482587	
mm_107172.1	chr12	24713596	24713796	+	1	NA	NA	NA	5442	NM_009104	20135	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0.005000	0.348259	
mm_38386.1	chr4	138809708	138809908	-	1	NA	NA	NA	9449	NM_011110	18784	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	0.015000	0.587065	
mm_7371.1	chr1	106759574	106759774	-	1	NA	NA	NA	68	NM_027534	70750	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	0.090000	0.661692	
mm_141532.1	chr17	31849484	31849684	-	1	NA	NA	NA	6208	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.035000	0.601990	
mm_121620.1	chr14	8298271	8298471	-	1	NA	NA	NA	11405	NM_183187	268709	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0.005000	0.542289	
mm_13469.1	chr2	105682390	105682590	+	1	NA	NA	NA	27	NM_001310145	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.010000	0.422886	
mm_153385.1	chr19	40376958	40377158	-	1	NA	NA	NA	25252	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.030000	0.492537	
mm_124258.1	chr14	102828091	102828291	-	1	NA	NA	NA	154441	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.005000	0.487562	-77(CCTTTTCGGGCC,+,0.00)
mm_33019.1	chr4	121039589	121039789	+	1	NA	NA	NA	123	NM_007741	12840	Mm.269384	NM_007741	ENSMUSG00000028626	Col9a2	AI427499|Col9a-2	collagen, type IX, alpha 2	protein-coding	0.100000	0.691542	
mm_31470.1	chr4	49631978	49632178	+	1	NA	NA	NA	18	NM_182999	109331	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0.080000	0.621891	
mm_45927.1	chr5	89445223	89445423	-	1	NA	NA	NA	12575	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.010000	0.497512	-99(TCCTATATAGCA,+,0.00)
mm_73057.1	chr8	94377802	94378002	+	1	NA	NA	NA	-8598	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.025000	0.592040	
mm_113605.1	chr13	41249724	41249924	+	1	NA	NA	NA	-20	NM_001135577	108934	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.090000	0.696517	
mm_103330.1	chr11	74572586	74572786	-	1	NA	NA	NA	17472	NM_001015046	380711	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.015000	0.577114	
mm_140129.1	chr17	79615144	79615344	+	1	NA	NA	NA	344	NM_201361	381110	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.095000	0.736318	
mm_5791.1	chr1	51895975	51896175	-	1	NA	NA	NA	19903	NM_001290982	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.015000	0.492537	
mm_48206.1	chr5	137600536	137600736	-	1	NA	NA	NA	72	NM_001254762	68929	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	0.050000	0.636816	
mm_62575.1	chr7	104332004	104332204	+	1	NA	NA	NA	2633	NM_001243916	434218	Mm.485757	NM_001243916	ENSMUSG00000090215	Trim34b	Gm15134|OTTMUSG00000019188|Trim34-2	tripartite motif-containing 34B	protein-coding	0.000000	0.293532	
mm_147860.1	chr18	64277063	64277263	-	1	NA	NA	NA	17	NR_045366	73588	Mm.65475	NR_045366	ENSMUSG00000086128	St8sia3os	1700091E21Rik	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3, opposite strand	ncRNA	0.025000	0.457711	
mm_98856.1	chr11	97663138	97663338	+	1	NA	NA	NA	-174	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.170000	0.840796	
mm_123815.1	chr14	70523358	70523558	-	1	NA	NA	NA	623	NM_011359	20389	Mm.24040	NM_011359	ENSMUSG00000022097	Sftpc	Bricd6|SP-C|SP5|SPC|Sftp-2|Sftp2|pro-SpC	surfactant associated protein C	protein-coding	0.010000	0.402985	-90(AGATATATAAGG,-,0.00)
mm_148795.1	chr19	6174786	6174986	+	1	NA	NA	NA	-9524	NM_001165919	622554	Mm.159757	NM_001165919	ENSMUSG00000024786	Majin	1700123I01Rik	membrane anchored junction protein	protein-coding	0.015000	0.562189	
mm_30694.1	chr4	11579561	11579761	+	1	NA	NA	NA	-1	NM_001256142	100503583	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	0.015000	0.457711	
mm_9181.1	chr1	171059264	171059464	-	1	NA	NA	NA	39	NM_010188	14131	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	0.005000	0.462687	
mm_72698.1	chr8	84977681	84977881	+	1	NA	NA	NA	967	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.095000	0.676617	-66(CCTCTTTAAAGG,-,0.00),-65(CTCTTTAAAGGC,+,0.00),-65(CTCTTTAAAGGC,-,0.00),-64(TCTTTAAAGGCG,+,0.00)
mm_77647.1	chr8	124563672	124563872	-	1	NA	NA	NA	5935	NM_007428	11606	Mm.301626	NM_007428	ENSMUSG00000031980	Agt	AI265500|AngI|AngII|Aogen|Serpina8	angiotensinogen (serpin peptidase inhibitor, clade A, member 8)	protein-coding	0.005000	0.507463	
mm_9536.1	chr1	173872857	173873057	-	1	NA	NA	NA	7230	NM_001170853	100040462	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	0.015000	0.407960	27(CGATATAAAAAC,-,0.00)
mm_499.1	chr1	36984511	36984711	+	1	NA	NA	NA	-45084	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.020000	0.512438	
mm_137633.1	chr17	28329278	28329478	+	1	NA	NA	NA	907	NM_011287	19896	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.060000	0.616915	
mm_43925.1	chr5	144788926	144789126	+	1	NA	NA	NA	20234	NM_001081362	100683	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0.020000	0.522388	
mm_145083.1	chr18	42394469	42394669	+	1	NA	NA	NA	-28	NM_138945	18998	Mm.488204	NM_138945	ENSMUSG00000024497	Pou4f3	Brn3.1|Brn3c|ddl|dreidel	POU domain, class 4, transcription factor 3	protein-coding	0.060000	0.626866	
mm_154618.1	chrX	7697104	7697304	+	1	NA	NA	NA	70	NM_173747	209416	Mm.148753	NM_173747	ENSMUSG00000031148	Gpkow	4432411B18|DXErtd697e|DXImx41e|T54	G patch domain and KOW motifs	protein-coding	0.095000	0.601990	
mm_56048.1	chr6	86737672	86737872	-	1	NA	NA	NA	-4394	NM_011818	23885	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	0.020000	0.442786	
mm_122979.1	chr14	54983254	54983454	-	1	NA	NA	NA	-7578	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.000000	0.502488	
mm_98413.1	chr11	94507367	94507567	+	1	NA	NA	NA	-7493	NM_027984	71889	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	0.020000	0.497512	
mm_4882.1	chr1	187997728	187997928	+	1	NA	NA	NA	1	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.055000	0.572139	
mm_147453.1	chr18	46574206	46574406	-	1	NA	NA	NA	227	NM_173394	225471	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.040000	0.562189	
mm_4315.1	chr1	171847954	171848154	+	1	NA	NA	NA	8357	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.010000	0.412935	
mm_146855.1	chr18	24178755	24178955	-	1	NA	NA	NA	-26489	NM_013814	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.030000	0.542289	
mm_96246.1	chr11	62574479	62574679	+	1	NA	NA	NA	93	NM_011706	22368	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0.010000	0.447761	
mm_119256.1	chr14	33940877	33941077	+	1	NA	NA	NA	-62	NM_019506	12165	Mm.422844	NM_019506	ENSMUSG00000072625	Gdf2	Bmp9	growth differentiation factor 2	protein-coding	0.015000	0.507463	
mm_156805.1	chrX	163909502	163909702	+	1	NA	NA	NA	585	NM_001290379	108012	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	0.080000	0.666667	
mm_165045.1	chr19	39510740	39510940	+	1	NA	NA	NA	18	NM_010003	13098	Mm.42101	NM_010003	ENSMUSG00000025003	Cyp2c39	CYPIIC39	cytochrome P450, family 2, subfamily c, polypeptide 39	protein-coding	0.005000	0.407960	-24(TGCTATAAAAGG,-,0.00)
mm_124659.1	chr15	5539459	5539659	+	1	NA	NA	NA	43241	NR_045274	71432	Mm.291087	NR_045274		5430437J10Rik	-	RIKEN cDNA 5430437J10 gene	ncRNA	0.020000	0.467662	
mm_122407.1	chr14	41008166	41008366	-	1	NA	NA	NA	0	NM_001316732	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.005000	0.572139	
mm_58473.1	chr7	3390815	3391015	+	1	NA	NA	NA	-3127	NM_133190	81905	Mm.357990	NM_133190	ENSMUSG00000053395	Cacng8	-	calcium channel, voltage-dependent, gamma subunit 8	protein-coding	0.015000	0.587065	
mm_16700.1	chr2	6921323	6921523	-	1	NA	NA	NA	7299	NR_027890	68144	Mm.483289	NM_026575		5031426D15Rik	-	RIKEN cDNA 5031426D15 gene	ncRNA	0.015000	0.363184	
mm_166805.1	chr7	5020377	5020577	+	1	NA	NA	NA	101	NM_001033383	319748	Mm.86607	NM_001033383	ENSMUSG00000074405	Zfp865	6430526N21Rik|Znf865	zinc finger protein 865	protein-coding	0.105000	0.696517	
mm_144409.1	chr18	20961269	20961469	+	1	NA	NA	NA	16744	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.060000	0.557214	
mm_85521.1	chr9	106447599	106447799	-	1	NA	NA	NA	-21	NM_001110272	68644	Mm.268925	NM_145919	ENSMUSG00000042210	Abhd14a	1110013B16Rik|AW558221|Dorz1	abhydrolase domain containing 14A	protein-coding	0.050000	0.601990	
mm_4170.1	chr1	171121534	171121734	+	1	NA	NA	NA	-27	NM_001081275	75472	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.015000	0.472637	-6(CCTCTTATGCCC,+,0.00)
mm_8434.1	chr1	152625031	152625231	-	1	NA	NA	NA	86	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.160000	0.791045	
mm_173040.1	chrX	114267816	114268016	-	1	NA	NA	NA	-206417	NM_001290478	237010	Mm.132583	NM_172781	ENSMUSG00000025597	Klhl4	B130014A11|C130018J01Rik	kelch-like 4	protein-coding	0.070000	0.651741	
mm_98366.1	chr11	93995307	93995507	+	1	NA	NA	NA	-684	NM_001199203	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.015000	0.547264	
mm_153463.1	chr19	41263870	41264070	-	1	NA	NA	NA	34	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.160000	0.796020	
mm_154769.1	chrX	12609400	12609600	+	1	NA	NA	NA	21741	NM_027439	70495	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	0.010000	0.402985	
mm_16523.1	chr2	181520422	181520622	+	1	NA	NA	NA	37	NM_001271584	13002	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0.105000	0.671642	
mm_106090.1	chr11	116197892	116198092	-	1	NA	NA	NA	-863	NM_027107	69535	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	0.005000	0.338308	
mm_95957.1	chr11	58782886	58783086	+	1	NA	NA	NA	-3153	NM_001011760	257917	Mm.377302	NM_001011760	ENSMUSG00000059504	Olfr314	MOR278-2	olfactory receptor 314	protein-coding	0.010000	0.517413	
mm_113561.1	chr13	38181079	38181279	+	1	NA	NA	NA	-23760	NM_026382	67797	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	0.045000	0.532338	
mm_38608.1	chr4	141864331	141864531	-	1	NA	NA	NA	10489	NM_025994	27984	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	0.010000	0.442786	
mm_26043.1	chr3	135571632	135571832	+	1	NA	NA	NA	86121	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.050000	0.487562	
mm_95359.1	chr11	48871766	48871966	+	1	NA	NA	NA	-520	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding	0.030000	0.462687	-34(CTCTATATAAAG,-,0.00)
mm_2953.1	chr1	132470170	132470370	+	1	NA	NA	NA	-7097	NM_172517	213464	Mm.132868	NM_172517	ENSMUSG00000026439	Rbbp5	4933411J24Rik|C330016J05	retinoblastoma binding protein 5	protein-coding	0.005000	0.507463	
mm_6079.1	chr1	62729335	62729535	-	1	NA	NA	NA	26118	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.015000	0.388060	
mm_58533.1	chr7	4412226	4412426	+	1	NA	NA	NA	-14582	NM_001163014	243816	Mm.248662	NM_001163014	ENSMUSG00000078810	Gp6	9830166G18Rik|Gm469|Gpvi	glycoprotein 6 (platelet)	protein-coding	0.045000	0.482587	
mm_110705.1	chr12	69320301	69320501	-	1	NA	NA	NA	23720	NM_027117	69554	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0.010000	0.373134	-31(GTTTTAATAGAA,+,0.00)
mm_150524.1	chr19	39042180	39042380	+	1	NA	NA	NA	-18726	NM_028191	72303	Mm.482578	NM_028191	ENSMUSG00000067231	Cyp2c65	2210009K14Rik	cytochrome P450, family 2, subfamily c, polypeptide 65	protein-coding	0.005000	0.432836	
mm_40999.1	chr5	77351208	77351408	+	1	NA	NA	NA	40824	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.035000	0.507463	
mm_173234.1	chrX	80457390	80457590	+	1	NA	NA	NA	-613154	NM_138751	192216	Mm.490421	NM_138751	ENSMUSG00000025666	Tmem47	3010015F07Rik|AI115536|BCMP1|Tm4sf10	transmembrane protein 47	protein-coding	0.000000	0.527363	
mm_67419.1	chr7	80324026	80324226	-	1	NA	NA	NA	328	NM_173445	269955	Mm.474502	NM_173445	ENSMUSG00000038930	Rccd1	5830436H09|E430018M08Rik	RCC1 domain containing 1	protein-coding	0.080000	0.572139	-14(GCCCTTAAAAAG,-,0.00),-12(CCTTAAAAAGTG,+,0.00),67(CTGCTTAAAGGG,-,0.00)
mm_11344.1	chr2	30807281	30807481	+	1	NA	NA	NA	-596	NM_170592	66617	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	0.040000	0.502488	
mm_133663.1	chr16	92015304	92015504	+	1	NA	NA	NA	-42918	NM_017391	53881	Mm.217354	NM_017391	ENSMUSG00000089774	Slc5a3	AA623876|BF642829|Smit1	solute carrier family 5 (inositol transporters), member 3	protein-coding	0.005000	0.502488	
mm_105449.1	chr11	104443412	104443612	-	1	NA	NA	NA	-1221	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.005000	0.363184	
mm_129143.1	chr15	76200529	76200729	-	1	NA	NA	NA	-22	NM_201390	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.020000	0.636816	
mm_93602.1	chr10	117224390	117224590	-	1	NA	NA	NA	17	NM_026570	64050	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0.120000	0.736318	
mm_33767.1	chr4	134401520	134401720	+	1	NA	NA	NA	-1292	NM_001285874	100163	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	0.025000	0.587065	
mm_70509.1	chr8	12926180	12926380	+	1	NA	NA	NA	10387	NM_178076	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.030000	0.626866	
mm_128248.1	chr15	36609453	36609653	-	1	NA	NA	NA	-580	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.125000	0.726368	
mm_161890.1	chr18	40258039	40258239	+	1	NA	NA	NA	-222	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.010000	0.417910	
mm_66169.1	chr7	33901719	33901919	-	1	NA	NA	NA	43166	NM_178308	110187	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	0.000000	0.432836	
mm_63029.1	chr7	121053632	121053832	+	1	NA	NA	NA	19287	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.000000	0.417910	
mm_107565.1	chr12	44221254	44221454	+	1	NA	NA	NA	-2	NR_045113	100039062	Mm.490648	NR_045113		Gm2027	-	nuclear assembly factor 1 homolog pseudogene	pseudo	0.010000	0.477612	
mm_91739.1	chr10	47102595	47102795	-	1	NA	NA	NA	857946	NR_028276	108637		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0.000000	0.417910	
mm_34536.1	chr4	149485222	149485422	+	1	NA	NA	NA	-11	NM_026963	69151	Mm.464434	NM_026963	ENSMUSG00000028990	Lzic	1810030J04Rik|AW047580	leucine zipper and CTNNBIP1 domain containing	protein-coding	0.095000	0.676617	
mm_120011.1	chr14	55672281	55672481	+	1	NA	NA	NA	146	NM_177992	105446	Mm.390685	NM_177992	ENSMUSG00000002326	Gmpr2	1810008P16Rik|5730544D12Rik|AA959850|GMPR 2	guanosine monophosphate reductase 2	protein-coding	0.040000	0.497512	
mm_120514.1	chr14	66636581	66636781	+	1	NA	NA	NA	1430	NM_001271760	11549	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	0.010000	0.417910	
mm_45615.1	chr5	75835721	75835921	-	1	NA	NA	NA	142607	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.055000	0.606965	
mm_139145.1	chr17	47521831	47522031	+	1	NA	NA	NA	16880	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.040000	0.626866	
mm_110991.1	chr12	77191623	77191823	-	1	NA	NA	NA	-46381	NM_001252614	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.005000	0.422886	
mm_61843.1	chr7	88290781	88290981	+	1	NA	NA	NA	12796	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.005000	0.398010	83(GCCCTTAAAGAG,-,0.00),85(CCTTAAAGAGTT,+,0.00)
mm_88623.1	chr10	79874411	79874611	+	1	NA	NA	NA	123	NM_181681	216152	Mm.29678	NM_181681	ENSMUSG00000035835	Plppr3	Lppr3|Prg2	phospholipid phosphatase related 3	protein-coding	0.115000	0.736318	
mm_44928.1	chr5	36146692	36146892	-	1	NA	NA	NA	-57229	NM_175249	76943	Mm.44242	NM_175249	ENSMUSG00000043430	Psapl1	2310020A21Rik	prosaposin-like 1	protein-coding	0.005000	0.427861	15(CCTCATAGAGAC,+,0.00)
mm_163127.1	chr11	78100791	78100991	-	1	NA	NA	NA	6218	NM_145430	216971	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0.025000	0.532338	
mm_47995.1	chr5	136135938	136136138	-	1	NA	NA	NA	36	NM_027891	71735	Mm.425292	NM_027891	ENSMUSG00000029703	Lrwd1	1200011O22Rik|AU042569|AW548074|Orca	leucine-rich repeats and WD repeat domain containing 1	protein-coding	0.090000	0.656716	
mm_29786.1	chr3	127522286	127522486	-	1	NA	NA	NA	-22842	NR_030403	723948		NR_030403	ENSMUSG00000076252	Mir302b	Mirn302b|mir-302b	microRNA 302b	ncRNA	0.005000	0.457711	
mm_43364.1	chr5	135369870	135370070	+	1	NA	NA	NA	17	NM_145414	100609	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	0.100000	0.631841	
mm_98915.1	chr11	98217109	98217309	+	1	NA	NA	NA	13904	NM_001109626	69131	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.020000	0.358209	
mm_108515.1	chr12	84038271	84038471	+	1	NA	NA	NA	-8	NM_134247	171282	Mm.482217	NM_134247	ENSMUSG00000052392	Acot4	B430212I04Rik|PTE-Ib|Pte1b|Pte2b	acyl-CoA thioesterase 4	protein-coding	0.035000	0.547264	
mm_13577.1	chr2	112367962	112368162	+	1	NA	NA	NA	-35	NM_026519	68032	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	0.070000	0.507463	
mm_14014.1	chr2	122149138	122149338	+	1	NA	NA	NA	1551	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.005000	0.452736	
mm_140559.1	chr17	7945768	7945968	-	1	NA	NA	NA	254	NM_025789	66832	Mm.29830	NM_025789	ENSMUSG00000073471	Rsph3a	1700012G05Rik|4930524H12Rik|R74860|Rshl2|Rshl2a	radial spoke 3A homolog (Chlamydomonas)	protein-coding	0.095000	0.691542	
mm_58829.1	chr7	16781247	16781447	+	1	NA	NA	NA	1	NM_009201	20514	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	0.085000	0.597015	-57(CCTTTTCAAGTC,+,0.00)
mm_163725.1	chr13	118714511	118714711	+	1	NA	NA	NA	-88	NM_008002	14165	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	0.025000	0.582090	
mm_114162.1	chr13	55413472	55413672	+	1	NA	NA	NA	1660	NM_029303	75477	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	0.035000	0.631841	
mm_118916.1	chr14	26693191	26693391	+	1	NA	NA	NA	-23445	NM_178668	211948	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	0.015000	0.412935	
mm_87870.1	chr10	61416438	61416638	+	1	NA	NA	NA	-1434	NM_013611	18119	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0.020000	0.542289	
mm_111364.1	chr12	87147796	87147996	-	1	NA	NA	NA	6	NM_153415	217734	Mm.388249	NM_153415	ENSMUSG00000034126	Pomt2	-	protein-O-mannosyltransferase 2	protein-coding	0.110000	0.686567	
mm_74048.1	chr8	122181692	122181892	+	1	NA	NA	NA	-100349	NM_009569	22761	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.015000	0.492537	
mm_39150.1	chr4	155397946	155398146	-	1	NA	NA	NA	23	NM_008072	14403	Mm.388925	NM_008072	ENSMUSG00000029054	Gabrd	AI853201	gamma-aminobutyric acid (GABA) A receptor, subunit delta	protein-coding	0.115000	0.731343	
mm_60370.1	chr7	44463010	44463210	+	1	NA	NA	NA	-2325	NM_026690	68352	Mm.88478	NM_026690	ENSMUSG00000038704	Aspdh	0610012D14Rik	aspartate dehydrogenase domain containing	protein-coding	0.015000	0.472637	-50(CCTTTTATGGCT,+,0.00)
mm_114686.1	chr13	81657689	81657889	+	1	NA	NA	NA	-17	NM_030257	80289	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	0.160000	0.731343	
mm_80779.1	chr9	95637528	95637728	+	1	NA	NA	NA	0	NM_029620	76477	Mm.46016	NM_029620	ENSMUSG00000015354	Pcolce2	2400001O18Rik|Pcpe2	procollagen C-endopeptidase enhancer 2	protein-coding	0.090000	0.706468	
mm_84245.1	chr9	62344554	62344754	-	1	NA	NA	NA	3311	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.075000	0.646766	
mm_41605.1	chr5	96374090	96374290	+	1	NA	NA	NA	235	NM_175473	231470	Mm.291120	NM_175473	ENSMUSG00000034687	Fras1	E130113P14Rik|bl|mKIAA1500	Fraser extracellular matrix complex subunit 1	protein-coding	0.125000	0.751244	
mm_119938.1	chr14	54976724	54976924	+	1	NA	NA	NA	-1048	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.000000	0.427861	
mm_36899.1	chr4	107684130	107684330	-	1	NA	NA	NA	-68	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.045000	0.562189	
mm_22410.1	chr2	181314188	181314388	-	1	NA	NA	NA	212	NM_009133	20262	Mm.2319	NM_009133	ENSMUSG00000027581	Stmn3	9330161A03Rik|AI604839|R75323|Sclip	stathmin-like 3	protein-coding	0.060000	0.691542	
mm_42736.1	chr5	120629998	120630198	+	1	NA	NA	NA	4137	NM_001195094	546886	Mm.464847	NM_001195094	ENSMUSG00000094282	Cfap73	Ccdc42b|Gm5988	cilia and flagella associated protein 73	protein-coding	0.065000	0.582090	
mm_53439.1	chr6	134189961	134190161	+	1	NA	NA	NA	154361	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.015000	0.507463	
mm_135237.1	chr16	36990068	36990268	-	1	NA	NA	NA	-11032	NM_001037321	207215	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0.045000	0.547264	
mm_24758.1	chr3	95454273	95454473	+	1	NA	NA	NA	19983	NM_001037737	11863	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	0.005000	0.472637	
mm_130183.1	chr15	93519413	93519613	-	1	NA	NA	NA	76378	NM_001033217	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.120000	0.716418	
mm_97187.1	chr11	75572429	75572629	+	1	NA	NA	NA	-15550	NM_008850	18738	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.020000	0.592040	
mm_165936.1	chr4	70625127	70625327	+	1	NA	NA	NA	-90299	NM_172694	230316	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.010000	0.462687	
mm_129977.1	chr15	85963420	85963620	-	1	NA	NA	NA	70257	NM_009886	12614	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	0.020000	0.547264	-34(GGTTATATAAGA,-,0.00)
mm_124546.1	chr14	122474074	122474274	-	1	NA	NA	NA	1025	NR_045046	69248	Mm.235369	NR_045046	ENSMUSG00000085555	2610035F20Rik	-	RIKEN cDNA 2610035F20 gene	ncRNA	0.075000	0.646766	
mm_42233.1	chr5	113550815	113551015	+	1	NA	NA	NA	495	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.050000	0.587065	
mm_160581.1	chr9	61914433	61914633	-	1	NA	NA	NA	-23	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.100000	0.626866	
mm_166126.1	chr4	154636822	154637022	+	1	NA	NA	NA	-49	NM_027504	70673	Mm.257785	NM_027504	ENSMUSG00000039410	Prdm16	5730557K01Rik|csp1|mel1	PR domain containing 16	protein-coding	0.085000	0.611940	
mm_153178.1	chr19	34493820	34494020	-	1	NA	NA	NA	-18785	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.010000	0.358209	
mm_150551.1	chr19	39324838	39325038	+	1	NA	NA	NA	37853	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.025000	0.527363	
mm_42792.1	chr5	121618960	121619160	+	1	NA	NA	NA	-122	NM_178799	338350	Mm.482918	NM_178799	ENSMUSG00000042647	Acad12	9330129D05Rik	acyl-Coenzyme A dehydrogenase family, member 12	protein-coding	0.150000	0.746269	
mm_90758.1	chr10	5550506	5550706	-	1	NA	NA	NA	86	NM_153399	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.090000	0.706468	
mm_69827.1	chr7	141269363	141269563	-	1	NA	NA	NA	-3039	NM_001252600	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.040000	0.666667	
mm_52331.1	chr6	109739696	109739896	+	1	NA	NA	NA	-905716	NM_001346640	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.000000	0.348259	
mm_105194.1	chr11	102082379	102082579	-	1	NA	NA	NA	6036	NM_016695	50997	Mm.36242	NM_016695	ENSMUSG00000017314	Mpp2	D11Bwg0652e|Dlg2|Dlgh2|Pals4	membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	protein-coding	0.060000	0.646766	
mm_168191.1	chr10	62864734	62864934	-	1	NA	NA	NA	15180	NM_027384	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.000000	0.268657	-84(GTATATAAATGG,-,0.00),16(AAGTTTTAAAGG,-,0.00)
mm_86419.1	chr10	3718060	3718260	+	1	NA	NA	NA	-22217	NM_001159942	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.020000	0.532338	
mm_72195.1	chr8	72530886	72531086	+	1	NA	NA	NA	17324	NM_027485	70625	Mm.235885	NM_027485	ENSMUSG00000045248	Med26	5730493L18Rik|AI414941|AW495270|Crsp7	mediator complex subunit 26	protein-coding	0.020000	0.407960	
mm_75752.1	chr8	69901896	69902096	-	1	NA	NA	NA	-188	NM_032004	83984	Mm.432504	NM_032004	ENSMUSG00000047654	Tssk6	Sstk|TSK-6|TSSK-6	testis-specific serine kinase 6	protein-coding	0.035000	0.601990	-38(CGCCCTTAATGG,-,0.00),-36(CCCTTAATGGTC,+,0.00)
mm_170338.1	chr18	46597675	46597875	+	1	NA	NA	NA	71	NM_010120	13664	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.090000	0.656716	
mm_154493.1	chrM	6302	6502	-	1	NA	NA	NA	NA	NA									0.020000	0.398010	
mm_84229.1	chr9	61976470	61976670	-	1	NA	NA	NA	-29771	NM_024245	71819	Mm.259374	NM_024245	ENSMUSG00000032254	Kif23	3110001D19Rik|C87313|CHO1|Knsl5|MKLP-1|MKLP1	kinesin family member 23	protein-coding	0.035000	0.552239	-74(GCCTTTATGAAG,-,0.00)
mm_115473.1	chr13	119488020	119488220	+	1	NA	NA	NA	81	NM_001039244	633640	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	0.105000	0.681592	
mm_65237.1	chr7	19764596	19764796	-	1	NA	NA	NA	5836	NM_020486	57278	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	0.030000	0.567164	
mm_106380.1	chr11	118494078	118494278	-	1	NA	NA	NA	17218	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.035000	0.582090	
mm_65971.1	chr7	30439937	30440137	-	1	NA	NA	NA	5545	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.040000	0.611940	
mm_142805.1	chr17	50495295	50495495	-	1	NA	NA	NA	-14152	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.020000	0.492537	
mm_122057.1	chr14	30330103	30330303	-	1	NA	NA	NA	23283	NM_001302637	12289	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.000000	0.497512	76(CTCCTTAAAAAA,-,0.00)
mm_53621.1	chr6	140432873	140433073	+	1	NA	NA	NA	8874	NM_144920	109135	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.005000	0.442786	
mm_169080.1	chr13	3375091	3375291	-	1	NA	NA	NA	-103112	NR_015522	76937	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0.010000	0.452736	
mm_26159.1	chr3	138217743	138217943	+	1	NA	NA	NA	70	NM_009626	11529	Mm.8473	NM_009626	ENSMUSG00000055301	Adh7	AI325182|Adh-3|Adh-3e|Adh-3t|Adh3|Adh3-e|Adh3-t|Adh4|Adt-1	alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide	protein-coding	0.030000	0.507463	
mm_54146.1	chr6	22329516	22329716	-	1	NA	NA	NA	26465	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.020000	0.398010	
mm_8718.1	chr1	160025618	160025818	-	1	NA	NA	NA	-18662	NR_028111	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.020000	0.522388	
mm_158871.1	chrY	1270523	1270723	-	1	NA	NA	NA	15990	NM_012008	26900	Mm.302938	NM_012008	ENSMUSG00000069045	Ddx3y	8030469F12Rik|D1Pas1-rs1|Dby	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked	protein-coding	0.005000	0.233831	
mm_15570.1	chr2	158624817	158625017	+	1	NA	NA	NA	4	NM_175419	109275	Mm.27747	NM_175419	ENSMUSG00000037761	Actr5	AA545173|B430109J19Rik	ARP5 actin-related protein 5	protein-coding	0.065000	0.616915	
mm_70001.1	chr7	142386764	142386964	-	1	NA	NA	NA	1006	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.000000	0.567164	
mm_158743.1	chrX	164258093	164258293	-	1	NA	NA	NA	0	NM_009759	12169	Mm.504	NM_009759	ENSMUSG00000031377	Bmx	Etk|Etk/Bmx|Tyro8	BMX non-receptor tyrosine kinase	protein-coding	0.020000	0.497512	
mm_101368.1	chr11	23758298	23758498	-	1	NA	NA	NA	12572	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.000000	0.393035	
mm_92229.1	chr10	68822668	68822868	-	1	NA	NA	NA	99022	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.000000	0.487562	
mm_27222.1	chr3	36053396	36053596	-	1	NA	NA	NA	51	NM_178418	241943	Mm.269018	NM_178418	ENSMUSG00000047696	Ccdc144b	-	coiled-coil domain containing 144B	protein-coding	0.040000	0.512438	
mm_98646.1	chr11	96251099	96251299	+	1	NA	NA	NA	-461	NR_037977	193022	Mm.169508	NR_037977		Gm53	-	predicted gene 53	ncRNA	0.040000	0.552239	
mm_69566.1	chr7	135700528	135700728	-	1	NA	NA	NA	15751	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.442786	
mm_108641.1	chr12	85824541	85824741	+	1	NA	NA	NA	-96	NM_021446	58520	Mm.143795	NM_021446	ENSMUSG00000021252	0610007P14Rik	1190004E09Rik|AU019315|C77855|ORF11	RIKEN cDNA 0610007P14 gene	protein-coding	0.055000	0.597015	
mm_58744.1	chr7	13277162	13277362	+	1	NA	NA	NA	-51	NM_001199310	16881	Mm.288179	NM_010715	ENSMUSG00000056394	Lig1	AL033288|LigI	ligase I, DNA, ATP-dependent	protein-coding	0.055000	0.577114	
mm_149240.1	chr19	10186730	10186930	+	1	NA	NA	NA	3942	NM_146094	76267	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0.025000	0.577114	
mm_170970.1	chr2	62001442	62001642	+	1	NA	NA	NA	-44973	NM_001242382	94229	Mm.314497	NM_033552	ENSMUSG00000026904	Slc4a10	NCBE|mKIAA4136	solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	protein-coding	0.020000	0.492537	-32(TTCTTTATAAGC,-,0.00),-30(CTTTATAAGCAC,+,0.00)
mm_32483.1	chr4	107890012	107890212	+	1	NA	NA	NA	213	NM_028754	74098	Mm.274853	NM_028754	ENSMUSG00000028608	0610037L13Rik	1110008H16Rik	RIKEN cDNA 0610037L13 gene	protein-coding	0.100000	0.666667	
mm_34175.1	chr4	140691203	140691403	+	1	NA	NA	NA	-10170	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.010000	0.587065	-34(CACTATAAAAGG,-,0.00)
mm_53624.1	chr6	140479731	140479931	+	1	NA	NA	NA	55732	NM_144920	109135	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.020000	0.477612	
mm_97870.1	chr11	83175151	83175351	+	1	NA	NA	NA	65	NM_001302559	20558	Mm.38192	NM_011410	ENSMUSG00000000204	Slfn4	AI450778	schlafen 4	protein-coding	0.040000	0.492537	
mm_98945.1	chr11	98412414	98412614	+	1	NA	NA	NA	30	NM_001003817	13866	Mm.290822	NM_001003817	ENSMUSG00000062312	Erbb2	Erbb-2|HER-2|HER2|Neu|c-erbB2|c-neu|l11Jus8|mKIAA3023	erb-b2 receptor tyrosine kinase 2	protein-coding	0.130000	0.776119	
mm_161734.1	chr17	31295292	31295492	+	1	NA	NA	NA	-91	NM_153062	224674	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.030000	0.562189	
mm_65637.1	chr7	27860934	27861134	-	1	NA	NA	NA	449	NM_001024726	545938	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	0.015000	0.567164	
mm_133176.1	chr16	72083010	72083210	+	1	NA	NA	NA	151217	NR_131116	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0.000000	0.313433	
mm_125054.1	chr15	25843427	25843627	+	1	NA	NA	NA	229	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.080000	0.726368	
mm_132780.1	chr16	44794699	44794899	+	1	NA	NA	NA	-25929	NM_207244	239849	Mm.445045	NM_207244	ENSMUSG00000062082	Cd200r4	F630107N04Rik|MCD200RLa	CD200 receptor 4	protein-coding	0.000000	0.308458	-61(GTGTATATATGC,-,0.00),-41(GCTTTTCAGGAC,+,0.00),13(GCTTATAAAGTG,+,0.00)
mm_87064.1	chr10	29029994	29030194	+	1	NA	NA	NA	-43788	NM_026336	67719	Mm.440480	NM_026336	ENSMUSG00000015519	2310057J18Rik	2210414P04Rik|Leg1	RIKEN cDNA 2310057J18 gene	protein-coding	0.055000	0.502488	
mm_125466.1	chr15	52958954	52959154	+	1	NA	NA	NA	246609	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.000000	0.522388	
mm_25435.1	chr3	107979507	107979707	+	1	NA	NA	NA	6829	NM_008183	14863	Mm.440086	NM_008183	ENSMUSG00000040562	Gstm2	Gstb-2|Gstb2	glutathione S-transferase, mu 2	protein-coding	0.045000	0.522388	
mm_12682.1	chr2	75834536	75834736	+	1	NA	NA	NA	2459	NM_172666	228061	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.000000	0.368159	
mm_157983.1	chrX	94136007	94136207	-	1	NA	NA	NA	-12700	NM_001044386	22764	Mm.919	NM_011768	ENSMUSG00000079509	Zfx	Zfx5|Zfx5,6|Zfx6	zinc finger protein X-linked	protein-coding	0.000000	0.328358	
mm_38030.1	chr4	133872955	133873155	-	1	NA	NA	NA	1676	NM_001285506	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.030000	0.666667	
mm_75273.1	chr8	40862181	40862381	-	1	NA	NA	NA	-86	NM_007514	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.105000	0.721393	
mm_60097.1	chr7	35119538	35119738	+	1	NA	NA	NA	345	NM_007678	12606	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.115000	0.706468	
mm_131327.1	chr16	13109704	13109904	+	1	NA	NA	NA	68	NM_015769	50505	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	0.095000	0.611940	
mm_132854.1	chr16	48281559	48281759	+	1	NA	NA	NA	-2076	NM_028610	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding	0.005000	0.452736	
mm_120559.1	chr14	68120559	68120759	+	1	NA	NA	NA	-3093	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.020000	0.487562	
mm_117573.1	chr13	85289376	85289576	-	1	NA	NA	NA	10	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.110000	0.731343	
mm_50558.1	chr6	49047725	49047925	+	1	NA	NA	NA	11307	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.020000	0.477612	
mm_72815.1	chr8	87563827	87564027	+	1	NA	NA	NA	20	NM_177901	330820	Mm.212913	NM_177901	ENSMUSG00000069971	4933402J07Rik	-	RIKEN cDNA 4933402J07 gene	protein-coding	0.005000	0.502488	
mm_27285.1	chr3	41496967	41497167	-	1	NA	NA	NA	-3868	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.015000	0.597015	
mm_17523.1	chr2	29252781	29252981	-	1	NA	NA	NA	112	NR_029460	76220	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0.090000	0.686567	
mm_43117.1	chr5	124629006	124629206	+	1	NA	NA	NA	54	NM_011596	21871	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0.130000	0.756219	
mm_151242.1	chr19	53863521	53863721	+	1	NA	NA	NA	-28610	NM_011050	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.000000	0.422886	
mm_38565.1	chr4	141708308	141708508	-	1	NA	NA	NA	15011	NM_001017966	68817	Mm.393721	NM_001017966	ENSMUSG00000078515	Ddi2	1110056G13Rik|1700027M01Rik|9130022E05Rik|AI604911|AU040698	DNA-damage inducible protein 2	protein-coding	0.020000	0.517413	-99(GTTTTTATGGCA,+,0.00)
mm_19563.1	chr2	100407697	100407897	-	1	NA	NA	NA	-1216951	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.005000	0.492537	
mm_144721.1	chr18	35120134	35120334	+	1	NA	NA	NA	1322	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.000000	0.338308	-47(GCTTTTCTAGTG,+,0.00)
mm_72694.1	chr8	84969981	84970181	+	1	NA	NA	NA	459	NM_011563	21672	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0.035000	0.527363	
mm_47185.1	chr5	120753877	120754077	-	1	NA	NA	NA	-4129	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.000000	0.333333	
mm_138152.1	chr17	34211843	34212043	+	1	NA	NA	NA	7464	NM_011530	21355	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.060000	0.616915	
mm_21790.1	chr2	164857074	164857274	-	1	NA	NA	NA	534	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.055000	0.562189	
mm_117246.1	chr13	64363895	64364095	-	1	NA	NA	NA	6525	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.005000	0.353234	
mm_89817.1	chr10	104659549	104659749	+	1	NA	NA	NA	372380	NR_105838	102465222		NR_105838	ENSMUSG00000099264	Mir6411	Gm27767|mmu-mir-6411	microRNA 6411	ncRNA	0.000000	0.417910	-34(AACTATAAAAAG,-,0.00)
mm_76690.1	chr8	94153914	94154114	-	1	NA	NA	NA	1407	NM_013603	17751	Mm.2064	NM_013603	ENSMUSG00000031760	Mt3	Mt-3	metallothionein 3	protein-coding	0.020000	0.636816	
mm_121906.1	chr14	21987465	21987665	-	1	NA	NA	NA	2036	NM_145459	218820	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.145000	0.776119	
mm_138333.1	chr17	34894593	34894793	+	1	NA	NA	NA	134	NM_198886	193736	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	0.130000	0.805970	
mm_154727.1	chrX	9436652	9436852	+	1	NA	NA	NA	32572	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.482587	
mm_1921.1	chr1	86039541	86039741	+	1	NA	NA	NA	-6222	NM_001144993	72792	Mm.54981	NM_001144992	ENSMUSG00000026227	2810459M11Rik	-	RIKEN cDNA 2810459M11 gene	protein-coding	0.015000	0.492537	
mm_33621.1	chr4	132709854	132710054	+	1	NA	NA	NA	22592	NM_201368	381560	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	0.015000	0.507463	
mm_73731.1	chr8	113635755	113635955	+	1	NA	NA	NA	56	NM_173015	270096	Mm.74689	NM_173015	ENSMUSG00000078908	Mon1b	5031407H10|5033413H12Rik	MON1 homolog B, secretory traffciking associated	protein-coding	0.070000	0.597015	
mm_111864.1	chr12	107980695	107980895	-	1	NA	NA	NA	22619	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.045000	0.626866	
mm_172811.1	chr9	123689373	123689573	-	1	NA	NA	NA	-10641	NM_139142	102680	Mm.440867	NM_139142	ENSMUSG00000036814	Slc6a20a	A730081N20Rik|AU022428|Xt3s1|Xtrp3s1	solute carrier family 6 (neurotransmitter transporter), member 20A	protein-coding	0.020000	0.482587	
mm_98111.1	chr11	87109088	87109288	+	1	NA	NA	NA	-73	NM_025377	66140	Mm.45008	NM_025377	ENSMUSG00000020492	Ska2	1110001A07Rik|C78640|Fam33a	spindle and kinetochore associated complex subunit 2	protein-coding	0.075000	0.557214	
mm_42369.1	chr5	114923294	114923494	+	1	NA	NA	NA	154	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.035000	0.597015	-80(CGCCTTAAAAAA,-,0.00),-78(CCTTAAAAAAGG,+,0.00)
mm_110280.1	chr12	32061101	32061301	-	1	NA	NA	NA	78	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.140000	0.786070	
mm_86740.1	chr10	19185117	19185317	+	1	NA	NA	NA	17979	NR_038022	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.015000	0.447761	-35(GCTCAAATAGCC,+,0.00)
mm_59981.1	chr7	30465394	30465594	+	1	NA	NA	NA	97	NR_004443	445267	Mm.398140	NR_004443	ENSMUSG00000087009	Nphs1os	Nphs1as	nephrosis 1 homolog, nephrin, opposite strand	ncRNA	0.065000	0.611940	
mm_102416.1	chr11	59202285	59202485	-	1	NA	NA	NA	46	NR_037964	72203	Mm.339566	NR_037964		2610507I01Rik	5033414D05Rik	RIKEN cDNA 2610507I01 gene	ncRNA	0.080000	0.651741	-80(CCCCATTAAGGG,-,0.00),-78(CCATTAAGGGCG,+,0.00)
mm_58163.1	chr6	142507836	142508036	-	1	NA	NA	NA	21	NM_008492	16832	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0.060000	0.626866	
mm_56901.1	chr6	119196383	119196583	-	1	NA	NA	NA	-74	NM_001255999	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.015000	0.497512	
mm_106471.1	chr11	120099343	120099543	-	1	NA	NA	NA	509	NM_001110242	208501	Mm.46699	NM_001110242	ENSMUSG00000078572	Ndufaf8	1810043H04Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 8	protein-coding	0.050000	0.611940	
mm_23489.1	chr3	60501796	60501996	+	1	NA	NA	NA	717	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.020000	0.482587	-82(TGCCTTATATGG,-,0.00),-80(CCTTATATGGAG,+,0.00)
mm_103344.1	chr11	74724217	74724417	-	1	NA	NA	NA	67	NM_013625	18472	Mm.397111	NM_013625	ENSMUSG00000020745	Pafah1b1	LIS-1|Lis1|MMS10-U|Mdsh|Ms10u|Pafaha	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	protein-coding	0.135000	0.741294	
mm_131984.1	chr16	25040190	25040390	+	1	NA	NA	NA	-19349	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.015000	0.502488	
mm_143345.1	chr17	66595235	66595435	-	1	NA	NA	NA	-713	NM_028998	74556	Mm.218634	NM_028998	ENSMUSG00000024105	Themis3	9130404H23Rik	thymocyte selection associated family member 3	protein-coding	0.005000	0.542289	-59(CACTATAAAAGA,-,0.00),-34(CACTATAAAAGG,-,0.00)
mm_158582.1	chrX	150812697	150812897	-	1	NA	NA	NA	906	NM_001199246	80884	Mm.22575	NM_030700	ENSMUSG00000025268	Maged2	4833439A22Rik|Mage-d2|ORF1	melanoma antigen, family D, 2	protein-coding	0.025000	0.532338	
mm_1579.1	chr1	74281119	74281319	+	1	NA	NA	NA	2619	NM_174985	227289	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.015000	0.537313	
mm_47149.1	chr5	120564634	120564834	-	1	NA	NA	NA	23879	NM_145853	252972	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.010000	0.472637	
mm_99587.1	chr11	104306547	104306747	+	1	NA	NA	NA	75211	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.060000	0.626866	
mm_147393.1	chr18	44196073	44196273	-	1	NA	NA	NA	4	NM_001048217	433181	Mm.117440	NM_001048217	ENSMUSG00000073573	Spink11	9230112K01Rik	serine peptidase inhibitor, Kazal type 11	protein-coding	0.010000	0.393035	-36(TGATATAAAAAG,-,0.00)
mm_75255.1	chr8	40511222	40511422	-	1	NA	NA	NA	432	NM_001271543	18983	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0.100000	0.696517	
mm_103269.1	chr11	72037356	72037556	-	1	NA	NA	NA	53	NM_053245	114230	Mm.95707	NM_053245	ENSMUSG00000040554	Aipl1	A930007I01Rik	aryl hydrocarbon receptor-interacting protein-like 1	protein-coding	0.015000	0.542289	
mm_131209.1	chr16	8680714	8680914	+	1	NA	NA	NA	44	NM_001324517	436336	Mm.357666	NM_001324517		Gm5767	EG436336	predicted gene 5767	protein-coding	0.010000	0.542289	
mm_25136.1	chr3	102469825	102470025	+	1	NA	NA	NA	6	NM_013609	18049	Mm.1259	NM_013609	ENSMUSG00000027859	Ngf	Ngfb	nerve growth factor	protein-coding	0.070000	0.641791	
mm_156776.1	chrX	161162660	161162860	+	1	NA	NA	NA	10	NM_001290651	107815	Mm.159173	NM_133194	ENSMUSG00000000037	Scml2	4932420G07Rik	sex comb on midleg-like 2 (Drosophila)	protein-coding	0.065000	0.621891	
mm_143472.1	chr17	71127487	71127687	-	1	NA	NA	NA	-56391	NM_022882	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.015000	0.507463	56(ATCTTTTAAAAG,-,0.00),57(TCTTTTAAAAGC,+,0.00),57(TCTTTTAAAAGC,-,0.00),58(CTTTTAAAAGCT,+,0.00)
mm_162921.1	chr10	120882573	120882773	+	1	NA	NA	NA	16298	NM_177092	320183	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	0.015000	0.517413	
mm_73656.1	chr8	110957668	110957868	+	1	NA	NA	NA	37903	NM_009179	20444	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	0.040000	0.601990	
mm_18384.1	chr2	60107904	60108104	-	1	NA	NA	NA	17736	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.010000	0.437811	
mm_12244.1	chr2	68868836	68869036	+	1	NA	NA	NA	7495	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.005000	0.427861	
mm_134357.1	chr16	16829148	16829348	-	1	NA	NA	NA	115	NM_015773	50525	Mm.31701	NM_015773	ENSMUSG00000022783	Spag6l	PF16|Spag6|Spag6l1	sperm associated antigen 6-like	protein-coding	0.065000	0.641791	
mm_153232.1	chr19	34922126	34922326	-	1	NA	NA	NA	-132	NM_183046	240641	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|B130024C23|C330014J10Rik|Mphosph1|magoo	kinesin family member 20B	protein-coding	0.100000	0.661692	
mm_123402.1	chr14	63508670	63508870	-	1	NA	NA	NA	322	NM_021480	58865	Mm.354229	NM_021480	ENSMUSG00000021953	Tdh	-	L-threonine dehydrogenase	protein-coding	0.070000	0.636816	
mm_131134.1	chr16	6068401	6068601	+	1	NA	NA	NA	92914	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA	0.005000	0.457711	
mm_133563.1	chr16	91397028	91397228	+	1	NA	NA	NA	-9107	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.015000	0.412935	
mm_8233.1	chr1	138175598	138175798	-	1	NA	NA	NA	-393	NM_001268286	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.020000	0.442786	
mm_152881.1	chr19	24528951	24529151	-	1	NA	NA	NA	26776	NM_008846	18719	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	0.005000	0.472637	
mm_138829.1	chr17	39847954	39848154	+	1	NA	NA	NA	5057	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.065000	0.532338	
mm_93595.1	chr10	117116390	117116590	-	1	NA	NA	NA	31984	NM_177798	327826	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0.010000	0.393035	
mm_22516.1	chr3	7620045	7620245	+	1	NA	NA	NA	-6385	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.000000	0.308458	
mm_60730.1	chr7	45420810	45421010	+	1	NA	NA	NA	-36	NM_008497	16866	Mm.57061	NM_008497	ENSMUSG00000100916	Lhb	Gm29035|LH|LH-B|LSH-B|LSH-beta	luteinizing hormone beta	protein-coding	0.010000	0.552239	
mm_135732.1	chr16	55831192	55831392	-	1	NA	NA	NA	7349	NM_030612	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.010000	0.467662	
mm_18239.1	chr2	52169031	52169231	-	1	NA	NA	NA	96294	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.005000	0.482587	
mm_162347.1	chr1	53313646	53313846	+	1	NA	NA	NA	122	NR_104360	72085	Mm.482256	NM_028091	ENSMUSG00000026096	Osgepl1	2610001M19Rik|AA416452	O-sialoglycoprotein endopeptidase-like 1	protein-coding	0.050000	0.542289	
mm_78536.1	chr9	35211159	35211359	+	1	NA	NA	NA	56	NM_026130	67398	Mm.284688	NM_026130	ENSMUSG00000032042	Srpr	1300011P19Rik|D11Mgi27|Srpra	signal recognition particle receptor ('docking protein')	protein-coding	0.115000	0.671642	
mm_107726.1	chr12	57230384	57230584	+	1	NA	NA	NA	59	NM_001164370	73490	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0.165000	0.731343	
mm_153869.1	chr19	46690056	46690256	-	1	NA	NA	NA	250	NM_025563	66439	Mm.87163	NM_025563	ENSMUSG00000062376	Borcs7	2010012O05Rik|4930569L17Rik|AI413851|AI467257	BLOC-1 related complex subunit 7	protein-coding	0.060000	0.621891	
mm_18038.1	chr2	38926246	38926446	-	1	NA	NA	NA	115	NM_010264	14536	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	0.120000	0.741294	
mm_169288.1	chr13	9834247	9834447	-	1	NA	NA	NA	-69026	NM_144516	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.070000	0.442786	
mm_36553.1	chr4	86857032	86857232	-	1	NA	NA	NA	235	NM_009096	20104	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	0.145000	0.731343	
mm_6780.1	chr1	84137830	84138030	-	1	NA	NA	NA	81031	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.422886	
mm_100088.1	chr11	115480839	115481039	+	1	NA	NA	NA	5262	NM_177778	276905	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0.005000	0.492537	
mm_95524.1	chr11	52224578	52224778	+	1	NA	NA	NA	-7317	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.040000	0.477612	
mm_83039.1	chr9	37348253	37348453	-	1	NA	NA	NA	39	NM_001081429	245902	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	0.080000	0.626866	
mm_156918.1	chrX	169099059	169099259	+	1	NA	NA	NA	-13719	NM_001287530	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.010000	0.358209	
mm_145595.1	chr18	60987439	60987639	+	1	NA	NA	NA	23985	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.020000	0.542289	
mm_54032.1	chr6	12724516	12724716	-	1	NA	NA	NA	24637	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding	0.000000	0.263682	
mm_157681.1	chrX	59568016	59568216	-	1	NA	NA	NA	17456	NM_001290414	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding	0.080000	0.681592	7(GTTTATATAGAA,+,0.00)
mm_87724.1	chr10	60106284	60106484	+	1	NA	NA	NA	127	NM_052994	94214	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.050000	0.621891	
mm_106770.1	chr12	4598811	4599011	+	1	NA	NA	NA	5903	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.010000	0.402985	46(GCCTTTTAAAAA,-,0.00),47(CCTTTTAAAAAT,+,0.00)
mm_34438.1	chr4	147868706	147868906	+	1	NA	NA	NA	-87	NM_001025365	28010	Mm.250504	NM_133873	ENSMUSG00000029022	Miip	AA553001|AI853621|D4Wsu114e|IIP45	migration and invasion inhibitory protein	protein-coding	0.030000	0.477612	
mm_152932.1	chr19	28560881	28561081	-	1	NA	NA	NA	-117243	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.000000	0.507463	
mm_90313.1	chr10	127048141	127048341	+	1	NA	NA	NA	-5	NM_010009	13115	Mm.6216	NM_010009	ENSMUSG00000006724	Cyp27b1	Cp2b|Cyp1|Cyp27b|Cyp40|P450c1|Pddr|Vdd1|Vddr|VddrI|Vdr	cytochrome P450, family 27, subfamily b, polypeptide 1	protein-coding	0.020000	0.547264	-35(GGGTATATATGG,-,0.00)
mm_22934.1	chr3	31163283	31163483	+	1	NA	NA	NA	13463	NM_008770	18417	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.030000	0.597015	
mm_33926.1	chr4	136802052	136802252	+	1	NA	NA	NA	33860	NM_001290753	13844	Mm.250981	NM_010142	ENSMUSG00000028664	Ephb2	Cek5|Drt|ETECK|Erk|Hek5|Nuk|Prkm5|Qek5|Sek3|Tyro5	Eph receptor B2	protein-coding	0.010000	0.467662	
mm_163552.1	chr13	23710827	23711027	-	1	NA	NA	NA	-73	NM_010424	15216	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0.010000	0.472637	
mm_141731.1	chr17	34118399	34118599	-	1	NA	NA	NA	1401	NR_037970	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.150000	0.736318	
mm_40440.1	chr5	53590963	53591163	+	1	NA	NA	NA	577	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.135000	0.756219	
mm_55613.1	chr6	72042452	72042652	-	1	NA	NA	NA	-24	NR_046180	330350	Mm.246787	NR_046180	ENSMUSG00000108356	9130221F21Rik	9130221F21	RIKEN cDNA 9130221F21 gene	ncRNA	0.015000	0.477612	
mm_71658.1	chr8	60524109	60524309	+	1	NA	NA	NA	18085	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.050000	0.552239	
mm_156637.1	chrX	157540583	157540783	+	1	NA	NA	NA	-121	NR_040420	625253	Mm.463485	NR_040420		Gm6568	EG625253	DnaJ (Hsp40) homolog, subfamily B, member 9 pseudogene	pseudo	0.045000	0.512438	
mm_84132.1	chr9	59036234	59036434	-	1	NA	NA	NA	107	NM_008684	18007	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0.125000	0.761194	
mm_145012.1	chr18	38602150	38602350	+	1	NA	NA	NA	-982	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.040000	0.616915	
mm_152029.1	chr19	6080224	6080424	-	1	NA	NA	NA	286	NM_001111317	433215	Mm.437186	NM_001111317	ENSMUSG00000047733	Tmem262	-	transmembrane protein 262	protein-coding	0.015000	0.507463	
mm_63719.1	chr7	130820024	130820224	+	1	NA	NA	NA	-45600	NM_001346515	101476	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.025000	0.532338	
mm_68547.1	chr7	114254553	114254753	-	1	NA	NA	NA	27	NM_033370	70349	Mm.277024	NM_033370	ENSMUSG00000030754	Copb1	2610019B04Rik	coatomer protein complex, subunit beta 1	protein-coding	0.115000	0.731343	
mm_114610.1	chr13	75839978	75840178	+	1	NA	NA	NA	192	NM_053108	93692	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.020000	0.487562	
mm_43483.1	chr5	136908092	136908292	+	1	NA	NA	NA	42	NM_026073	67286	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	0.095000	0.651741	
mm_138427.1	chr17	35076825	35077025	+	1	NA	NA	NA	-17	NM_027366	70274	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	0.020000	0.577114	
mm_33763.1	chr4	134396284	134396484	+	1	NA	NA	NA	64	NM_001285875	100163	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	0.040000	0.457711	
mm_109039.1	chr12	104214422	104214622	+	1	NA	NA	NA	-22	NM_001168294	238393	Mm.483584	NM_001033335	ENSMUSG00000066363	Serpina3f	2A1|BC049975	serine (or cysteine) peptidase inhibitor, clade A, member 3F	protein-coding	0.000000	0.512438	
mm_11300.1	chr2	30171449	30171649	+	1	NA	NA	NA	25	NM_007931	13804	Mm.474473	NM_007931	ENSMUSG00000015337	Endog	-	endonuclease G	protein-coding	0.105000	0.696517	-71(CGTCTTAAAAGG,-,0.00),-69(TCTTAAAAGGGC,+,0.00)
mm_163684.1	chr13	94548243	94548443	-	1	NA	NA	NA	189383	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.020000	0.542289	
mm_157262.1	chrX	19167141	19167341	-	1	NA	NA	NA	-20270	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.015000	0.507463	-34(CCCTATAAAAAA,-,0.00)
mm_76613.1	chr8	91135564	91135764	-	1	NA	NA	NA	-170	NM_010241	14339	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	0.035000	0.547264	
mm_55507.1	chr6	69900562	69900762	-	1	NA	NA	NA	-573488	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.447761	
mm_78511.1	chr9	32906494	32906694	+	1	NA	NA	NA	22372	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.025000	0.482587	
mm_113639.1	chr13	42052916	42053116	+	1	NA	NA	NA	995	NM_007772	110521	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.045000	0.462687	
mm_118981.1	chr14	28379967	28380167	+	1	NA	NA	NA	-125406	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.010000	0.383085	-78(GCTTTTAAATGT,+,0.00),-2(TCCTATAAAGAG,+,0.00),-2(TCCTATAAAGAG,-,0.00)
mm_131587.1	chr16	18548618	18548818	+	1	NA	NA	NA	38251	NM_011532	21380	Mm.295194	NM_011532	ENSMUSG00000009097	Tbx1	-	T-box 1	protein-coding	0.010000	0.502488	
mm_84992.1	chr9	86695548	86695748	-	1	NA	NA	NA	206	NR_045835	319556	Mm.386894	NR_045835	ENSMUSG00000087466	A330041J22Rik	-	RIKEN cDNA A330041J22 gene	ncRNA	0.130000	0.786070	
mm_98531.1	chr11	95006229	95006429	+	1	NA	NA	NA	-3550	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.015000	0.517413	
mm_29409.1	chr3	108911577	108911777	-	1	NA	NA	NA	27	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.115000	0.666667	
mm_163707.1	chr13	108335798	108335998	+	1	NA	NA	NA	19561	NM_178683	218581	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.025000	0.532338	
mm_62161.1	chr7	97190540	97190740	+	1	NA	NA	NA	108889	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.005000	0.258706	
mm_97109.1	chr11	74649879	74650079	+	1	NA	NA	NA	484	NM_001081158	74148	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.110000	0.701493	
mm_74532.1	chr8	9672589	9672789	-	1	NA	NA	NA	98334	NM_173446	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding	0.000000	0.472637	
mm_146892.1	chr18	26917968	26918168	-	1	NA	NA	NA	-1164085	NM_001174074	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.005000	0.472637	
mm_110891.1	chr12	75589443	75589643	-	1	NA	NA	NA	6657	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.005000	0.333333	
mm_68038.1	chr7	101354319	101354519	-	1	NA	NA	NA	6350	NM_001040111	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.025000	0.527363	
mm_31289.1	chr4	45949315	45949515	+	1	NA	NA	NA	-15920	NM_001290475	100121	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.015000	0.467662	
mm_171140.1	chr3	150225574	150225774	-	1	NA	NA	NA	950937	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.000000	0.547264	
mm_163054.1	chr11	59331290	59331490	+	1	NA	NA	NA	24460	NM_139298	216795	Mm.218794	NM_139298	ENSMUSG00000000126	Wnt9a	Wnt14	wingless-type MMTV integration site family, member 9A	protein-coding	0.030000	0.606965	
mm_1396.1	chr1	67134738	67134938	+	1	NA	NA	NA	11811	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.010000	0.442786	
mm_73612.1	chr8	110090026	110090226	+	1	NA	NA	NA	10392	NM_175480	234725	Mm.87487	NM_175480	ENSMUSG00000044676	Zfp612	B230354B21Rik	zinc finger protein 612	protein-coding	0.005000	0.383085	
mm_3635.1	chr1	152807854	152808054	+	1	NA	NA	NA	7801	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.045000	0.572139	
mm_141190.1	chr17	26939449	26939649	-	1	NA	NA	NA	-11	NM_026307	67675	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	0.085000	0.656716	
mm_132191.1	chr16	32431153	32431353	+	1	NA	NA	NA	23	NM_001163160	13026	Mm.98775	NM_009981	ENSMUSG00000005615	Pcyt1a	CTalpha|Cctalpha|Ctpct|Cttalpha	phosphate cytidylyltransferase 1, choline, alpha isoform	protein-coding	0.055000	0.601990	
mm_31806.1	chr4	65407881	65408081	+	1	NA	NA	NA	-197005	NM_053084	69807	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0.005000	0.492537	
mm_41569.1	chr5	93161102	93161302	+	1	NA	NA	NA	45293	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.035000	0.552239	
mm_103827.1	chr11	83012373	83012573	-	1	NA	NA	NA	8249	NM_001167743	276950	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0.000000	0.323383	
mm_45720.1	chr5	86020750	86020950	-	1	NA	NA	NA	44733	NM_001345902	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0.020000	0.368159	
mm_158268.1	chrX	109190963	109191163	-	1	NA	NA	NA	-5693	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.015000	0.472637	
mm_121834.1	chr14	20531756	20531956	-	1	NA	NA	NA	-14437	NR_033571	75602	Mm.437061	NR_033571	ENSMUSG00000084925	1810062O18Rik	-	RIKEN cDNA 1810062O18 gene	ncRNA	0.005000	0.333333	
mm_5110.1	chr1	6214425	6214625	-	1	NA	NA	NA	-137	NM_009826	12421	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	0.095000	0.671642	
mm_68761.1	chr7	121589752	121589952	-	1	NA	NA	NA	-16	NR_102286	75793	Mm.23397	NR_102286		4933432K03Rik	1700001C18Rik|4930433G11Rik|AI428127	RIKEN cDNA 4933432K03 gene	ncRNA	0.025000	0.502488	
mm_65531.1	chr7	25801823	25802023	-	1	NA	NA	NA	-13190	NM_001190975	26362	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.015000	0.422886	
mm_159277.1	chr2	165316265	165316465	-	1	NA	NA	NA	-14	NM_001302754	140579	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.040000	0.557214	
mm_16048.1	chr2	167750175	167750375	+	1	NA	NA	NA	59098	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.000000	0.552239	
mm_144747.1	chr18	35599107	35599307	+	1	NA	NA	NA	540	NM_026420	67869	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	0.080000	0.641791	
mm_106275.1	chr11	117991731	117991931	-	1	NA	NA	NA	4974	NM_133757	74451	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.020000	0.537313	
mm_130456.1	chr15	98567505	98567705	-	1	NA	NA	NA	31	NM_009833	12455	Mm.29941	NM_009833	ENSMUSG00000011960	Ccnt1	2810478G24Rik|AI115585|CycT1	cyclin T1	protein-coding	0.090000	0.601990	
mm_76383.1	chr8	84842417	84842617	-	1	NA	NA	NA	-1852	NM_009010	19358	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.005000	0.477612	
mm_81930.1	chr9	120179769	120179969	+	1	NA	NA	NA	30127	NM_001039364	17433	Mm.486167	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.020000	0.407960	-79(CCCTTTAGAGAA,+,0.00)
mm_65307.1	chr7	24751958	24752158	-	1	NA	NA	NA	8253	NM_026862	68891	Mm.292848	NM_026862	ENSMUSG00000052212	Cd177	1190003K14Rik|Pdp3	CD177 antigen	protein-coding	0.025000	0.567164	
mm_88188.1	chr10	70024854	70025054	+	1	NA	NA	NA	-72167	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.020000	0.457711	
mm_55519.1	chr6	70315370	70315570	-	1	NA	NA	NA	476705	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.005000	0.437811	
mm_9468.1	chr1	173333381	173333581	-	1	NA	NA	NA	22	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	0.010000	0.522388	
mm_131887.1	chr16	23225946	23226146	+	1	NA	NA	NA	25	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.030000	0.567164	
mm_164407.1	chr16	36097935	36098135	-	1	NA	NA	NA	16760	NM_001159422	381045	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	0.015000	0.492537	-33(TTCTATAAAAAC,-,0.00)
mm_25717.1	chr3	122729027	122729227	+	1	NA	NA	NA	-31	NM_153422	242202	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	0.075000	0.671642	
mm_35752.1	chr4	45770641	45770841	-	1	NA	NA	NA	-6518	NR_046068	100040567	Mm.490816	NR_046068	ENSMUSG00000085876	Gm12409	OTTMUSG00000006726	predicted gene 12409	ncRNA	0.015000	0.626866	
mm_30342.1	chr3	151737221	151737421	-	1	NA	NA	NA	12638	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.000000	0.412935	
mm_93698.1	chr10	117982543	117982743	-	1	NA	NA	NA	57184	NR_045342	71067	Mm.410793	NR_045342		4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0.030000	0.452736	79(GTGTATTTAAGA,-,0.00)
mm_19111.1	chr2	79456535	79456735	-	1	NA	NA	NA	1	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.085000	0.587065	
mm_55078.1	chr6	49214070	49214270	-	1	NA	NA	NA	784	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.120000	0.771144	
mm_75957.1	chr8	71701719	71701919	-	1	NA	NA	NA	-19	NM_028189	72297	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	0.045000	0.626866	
mm_16250.1	chr2	173158731	173158931	+	1	NA	NA	NA	5758	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.015000	0.452736	-60(CTTTTAATAGTC,+,0.00)
mm_86308.1	chr9	122805348	122805548	-	1	NA	NA	NA	-99	NM_001013405	382117	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding	0.050000	0.577114	
mm_60896.1	chr7	46397711	46397911	+	1	NA	NA	NA	1343	NM_001112739	16502	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.135000	0.666667	
mm_134955.1	chr16	31310976	31311176	-	1	NA	NA	NA	3732	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.025000	0.537313	
mm_5019.1	chr1	193153043	193153243	+	1	NA	NA	NA	31	NM_016851	54139	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	0.065000	0.681592	
mm_37227.1	chr4	117929663	117929863	-	1	NA	NA	NA	0	NM_001284191	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.060000	0.616915	
mm_145904.1	chr18	65800471	65800671	+	1	NA	NA	NA	-7	NM_025468	66286	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0.095000	0.706468	
mm_34083.1	chr4	138775706	138775906	+	1	NA	NA	NA	71	NM_011109	18782	Mm.71913	NM_011109	ENSMUSG00000041202	Pla2g2d	Splash|mGIID	phospholipase A2, group IID	protein-coding	0.025000	0.577114	
mm_58291.1	chr6	145864605	145864805	-	1	NA	NA	NA	715	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.020000	0.427861	
mm_107994.1	chr12	73286791	73286991	+	1	NA	NA	NA	43	NM_001037717	625098	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0.095000	0.671642	
mm_115662.1	chr13	12461444	12461644	-	1	NA	NA	NA	194	NM_001291060	56048	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.095000	0.681592	
mm_105840.1	chr11	113683782	113683982	-	1	NA	NA	NA	269	NM_138598	28081	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0.145000	0.756219	
mm_13998.1	chr2	121956050	121956250	+	1	NA	NA	NA	-58	NM_008545	17147	Mm.389349	NM_008545	ENSMUSG00000074881	Mageb3	Mage-b3|Mage-ps1|Mage-rs3|Smage3	melanoma antigen, family B, 3	protein-coding	0.080000	0.597015	
mm_22387.1	chr2	181156964	181157164	-	1	NA	NA	NA	-49	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.045000	0.582090	
mm_82135.1	chr9	123561539	123561739	+	1	NA	NA	NA	31757	NM_030692	83493	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.000000	0.328358	
mm_41766.1	chr5	103501022	103501222	+	1	NA	NA	NA	75930	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.025000	0.427861	
mm_59053.1	chr7	19414036	19414236	+	1	NA	NA	NA	3042	NM_007710	12715	Mm.2375	NM_007710	ENSMUSG00000030399	Ckm	Ckmm|M-CK|MCK	creatine kinase, muscle	protein-coding	0.040000	0.577114	-95(CTTTTTCAAGCC,+,0.00)
mm_103529.1	chr11	77200834	77201034	-	1	NA	NA	NA	-11966	NM_176965	319634	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	0.005000	0.412935	
mm_10150.1	chr2	4300657	4300857	+	1	NA	NA	NA	-100219	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.015000	0.482587	
mm_160744.1	chr10	81033624	81033824	-	1	NA	NA	NA	188	NM_134135	106947	Mm.5353	NM_134135	ENSMUSG00000046822	Slc39a3	AI845814|Zip3	solute carrier family 39 (zinc transporter), member 3	protein-coding	0.035000	0.582090	78(GCTTTAATGCAC,+,0.00)
mm_133045.1	chr16	57549148	57549348	+	1	NA	NA	NA	6	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.180000	0.786070	-70(CGCCTTATAAGG,-,0.00),-68(CCTTATAAGGCT,+,0.00)
mm_18044.1	chr2	39007863	39008063	-	1	NA	NA	NA	-176	NM_028809	74192	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	0.085000	0.616915	
mm_40497.1	chr5	57717970	57718170	+	1	NA	NA	NA	-11	NM_001122758	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.065000	0.621891	
mm_131753.1	chr16	22514916	22515116	+	1	NA	NA	NA	3536	NR_130988	78082	Mm.243927	NR_130988	ENSMUSG00000089874	9230117E06Rik	-	RIKEN cDNA 9230117E06 gene	ncRNA	0.030000	0.582090	
mm_15249.1	chr2	154691177	154691377	+	1	NA	NA	NA	34251	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.010000	0.477612	
mm_31662.1	chr4	59964036	59964236	+	1	NA	NA	NA	-3471	NM_008648	17843	Mm.457982	NM_008648	ENSMUSG00000041333	Mup4	Mup-4|Mup1	major urinary protein 4	protein-coding	0.000000	0.417910	
mm_52679.1	chr6	117917268	117917468	+	1	NA	NA	NA	74	NM_001166427	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.125000	0.701493	
mm_126727.1	chr15	85580084	85580284	+	1	NA	NA	NA	545	NM_001163633	22422	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	0.015000	0.542289	
mm_102845.1	chr11	69369142	69369342	-	1	NA	NA	NA	184	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.130000	0.741294	
mm_143105.1	chr17	57087547	57087747	-	1	NA	NA	NA	135	NM_009451	22153	Mm.7420	NM_009451	ENSMUSG00000062591	Tubb4a	AI325297|M(beta)4|Tubb|Tubb4	tubulin, beta 4A class IVA	protein-coding	0.075000	0.646766	
mm_148559.1	chr19	4721180	4721380	+	1	NA	NA	NA	10057	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	0.025000	0.597015	
mm_129135.1	chr15	76198123	76198323	-	1	NA	NA	NA	-14	NM_201393	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.090000	0.681592	
mm_96731.1	chr11	69686625	69686825	+	1	NA	NA	NA	-1171	NM_023517	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.010000	0.547264	
mm_32072.1	chr4	97906073	97906273	+	1	NA	NA	NA	128547	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.010000	0.323383	26(GGCTTTAAAAGC,-,0.00),27(GCTTTAAAAGCC,+,0.00)
mm_72425.1	chr8	82774693	82774893	+	1	NA	NA	NA	-667	NM_145600	30932	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	0.010000	0.467662	
mm_123047.1	chr14	55591393	55591593	-	1	NA	NA	NA	-297	NM_194346	268749	Mm.23748	NM_194346	ENSMUSG00000047098	Rnf31	AL033293|BC031509|Flj10111|HOIP|Paul|mFLJ00217	ring finger protein 31	protein-coding	0.055000	0.582090	
mm_13711.1	chr2	117161715	117161915	+	1	NA	NA	NA	-23312	NR_030440	732489		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.010000	0.492537	
mm_13418.1	chr2	104122752	104122952	+	1	NA	NA	NA	83	NM_026634	68243	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0.120000	0.651741	
mm_7429.1	chr1	119837262	119837462	-	1	NA	NA	NA	-291	NM_019933	19258	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	0.085000	0.651741	
mm_147640.1	chr18	60269543	60269743	-	1	NA	NA	NA	3624	NM_001034859	225594	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	0.005000	0.373134	
mm_2088.1	chr1	87698052	87698252	+	1	NA	NA	NA	-57859	NM_029846	77040	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.020000	0.542289	
mm_45172.1	chr5	51497208	51497408	-	1	NA	NA	NA	56613	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.000000	0.283582	-8(TTTTTTATGGAG,+,0.00)
mm_152854.1	chr19	24146956	24147156	-	1	NA	NA	NA	27084	NM_001198985	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.025000	0.462687	
mm_59829.1	chr7	29296533	29296733	+	1	NA	NA	NA	7313	NM_026731	68458	Mm.2343	NM_026731	ENSMUSG00000037166	Ppp1r14a	1110001M11Rik|Cpi17	protein phosphatase 1, regulatory (inhibitor) subunit 14A	protein-coding	0.005000	0.353234	
mm_48205.1	chr5	137599701	137599901	-	1	NA	NA	NA	907	NM_001254762	68929	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	0.030000	0.537313	
mm_159546.1	chr4	91399885	91400085	-	1	NA	NA	NA	-1	NM_207685	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding	0.035000	0.582090	
mm_111745.1	chr12	103904850	103905050	-	1	NA	NA	NA	0	NM_009245	20702	Mm.439692	NM_009245	ENSMUSG00000079015	Serpina1c	Pi3|Pi6|Skalp|Spi1-3|Spi1-6|Wap3	serine (or cysteine) peptidase inhibitor, clade A, member 1C	protein-coding	0.010000	0.497512	
mm_103495.1	chr11	76571288	76571488	-	1	NA	NA	NA	-4	NM_198895	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.120000	0.761194	
mm_97014.1	chr11	71019532	71019732	+	1	NA	NA	NA	21	NM_025993	67139	Mm.28227	NM_025993	ENSMUSG00000040599	Mis12	2510025F08Rik|AU044651|Misc12	MIS12 kinetochore complex component	protein-coding	0.085000	0.621891	
mm_156848.1	chrX	164400657	164400857	+	1	NA	NA	NA	-19030	NM_011081	18700	Mm.3781	NM_011081	ENSMUSG00000031381	Piga	AI194334|Pig-a	phosphatidylinositol glycan anchor biosynthesis, class A	protein-coding	0.030000	0.497512	
mm_99262.1	chr11	101245966	101246166	+	1	NA	NA	NA	-268	NM_019444	54409	Mm.260698	NM_019444	ENSMUSG00000001240	Ramp2	-	receptor (calcitonin) activity modifying protein 2	protein-coding	0.050000	0.626866	
mm_76136.1	chr8	81014754	81014954	-	1	NA	NA	NA	52	NM_027554	74841	Mm.246018	NM_027554	ENSMUSG00000038250	Usp38	4631402N15Rik|4833420O05Rik|AA536967|AU044701|AW544820|mKIAA1891	ubiquitin specific peptidase 38	protein-coding	0.080000	0.626866	
mm_75287.1	chr8	41041573	41041773	-	1	NA	NA	NA	258	NM_001005865	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.020000	0.547264	
mm_70665.1	chr8	14888755	14888955	+	1	NA	NA	NA	319	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.080000	0.646766	
mm_104596.1	chr11	97115230	97115430	-	1	NA	NA	NA	1	NM_019507	57765	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0.090000	0.681592	-33(CTTCATAAAGCC,+,0.00)
mm_67950.1	chr7	100498142	100498342	-	1	NA	NA	NA	4884	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.030000	0.592040	
mm_127724.1	chr15	103239946	103240146	+	1	NA	NA	NA	-230	NM_001076789	12419	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0.085000	0.557214	6(CGCCTTATAGGG,-,0.00),8(CCTTATAGGGAG,+,0.00)
mm_138906.1	chr17	43588531	43588731	+	1	NA	NA	NA	2878	NR_045445	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.010000	0.462687	
mm_108438.1	chr12	82339637	82339837	+	1	NA	NA	NA	28388	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.025000	0.532338	
mm_22712.1	chr3	19188017	19188217	+	1	NA	NA	NA	-104	NM_026182	67472	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.105000	0.711443	
mm_107728.1	chr12	57414058	57414258	+	1	NA	NA	NA	131963	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.005000	0.353234	59(GACTTTTAAAGT,-,0.00),60(ACTTTTAAAGTA,+,0.00)
mm_43279.1	chr5	130845030	130845230	+	1	NA	NA	NA	396338	NM_021371	140904	Mm.40875	NM_021371	ENSMUSG00000060371	Caln1	9630012C17Rik|Cabp8|MNCb-0849	calneuron 1	protein-coding	0.005000	0.462687	
mm_110573.1	chr12	56373622	56373822	-	1	NA	NA	NA	-27828	NM_145442	217588	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0.045000	0.487562	
mm_38667.1	chr4	144565171	144565371	-	1	NA	NA	NA	-137	NM_001085542	627085	Mm.457899	NM_001085542	ENSMUSG00000078506	Gm13124	OTTMUSG00000010546	predicted gene 13124	protein-coding	0.000000	0.507463	
mm_62262.1	chr7	99381425	99381625	+	1	NA	NA	NA	-24	NM_201352	233552	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0.115000	0.721393	
mm_138728.1	chr17	36943198	36943398	+	1	NA	NA	NA	247	NM_001099632	386454	Mm.105324	NM_001099632	ENSMUSG00000036492	Rnf39	BC038661|Gm1786|Gm1787|Gm320|LIRF	ring finger protein 39	protein-coding	0.110000	0.746269	
mm_90499.1	chr10	128035400	128035600	+	1	NA	NA	NA	154	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.120000	0.696517	
mm_89883.1	chr10	108414388	108414588	+	1	NA	NA	NA	82299	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.010000	0.258706	
mm_123358.1	chr14	63142621	63142821	-	1	NA	NA	NA	20259	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.020000	0.552239	
mm_164066.1	chr14	118428279	118428479	+	1	NA	NA	NA	62501	NR_045624	73306	Mm.362328	NR_045624	ENSMUSG00000099911	1700044C05Rik	-	RIKEN cDNA 1700044C05 gene	ncRNA	0.010000	0.422886	
mm_142004.1	chr17	35199927	35200127	-	1	NA	NA	NA	1980	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.000000	0.517413	
mm_128026.1	chr15	25135537	25135737	-	1	NA	NA	NA	278127	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.030000	0.542289	
mm_11725.1	chr2	36388925	36389125	+	1	NA	NA	NA	-886	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.030000	0.542289	
mm_129361.1	chr15	77956591	77956791	-	1	NA	NA	NA	31	NM_001168260	239554	Mm.295605	NM_001017983	ENSMUSG00000016552	Foxred2	A430097D04Rik|D15Bwg0759e|Gm304	FAD-dependent oxidoreductase domain containing 2	protein-coding	0.115000	0.721393	
mm_42977.1	chr5	123167488	123167688	+	1	NA	NA	NA	15098	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.015000	0.502488	
mm_54950.1	chr6	48680476	48680676	-	1	NA	NA	NA	-4002	NM_001243200	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.015000	0.472637	-33(GGGCATAAAAGT,-,0.00)
mm_113838.1	chr13	47193759	47193959	+	1	NA	NA	NA	-144	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.060000	0.611940	
mm_114687.1	chr13	81711332	81711532	+	1	NA	NA	NA	15	NM_028372	72852	Mm.31095	NM_028372	ENSMUSG00000051098	Mblac2	2900024O10Rik	metallo-beta-lactamase domain containing 2	protein-coding	0.065000	0.666667	
mm_8727.1	chr1	160053003	160053203	-	1	NA	NA	NA	8723	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.005000	0.502488	
mm_154397.1	chrM	13387	13587	+	1	NA	NA	NA	NA	NA									0.010000	0.303483	
mm_119168.1	chr14	32085677	32085877	+	1	NA	NA	NA	49	NM_145460	218885	Mm.202257	NM_145460	ENSMUSG00000021906	Oxnad1	2410002F01Rik|AW492292|BC019806	oxidoreductase NAD-binding domain containing 1	protein-coding	0.065000	0.582090	
mm_116444.1	chr13	43154684	43154884	-	1	NA	NA	NA	16717	NM_001252639	67046	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	0.035000	0.497512	
mm_129932.1	chr15	84675094	84675294	-	1	NA	NA	NA	-5804	NM_146061	109270	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0.005000	0.497512	
mm_14381.1	chr2	129630824	129631024	+	1	NA	NA	NA	37755	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.000000	0.323383	-72(CAGTCTTAAAGC,-,0.00)
mm_39771.1	chr5	30013875	30014075	+	1	NA	NA	NA	861	NM_031168	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.000000	0.437811	
mm_51337.1	chr6	72414210	72414410	+	1	NA	NA	NA	2	NM_019802	56316	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	0.080000	0.661692	
mm_104141.1	chr11	86993711	86993911	-	1	NA	NA	NA	-49	NM_001005341	77864	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee-like 2 (Drosophila)	protein-coding	0.095000	0.711443	
mm_70063.1	chr7	142652174	142652374	-	1	NA	NA	NA	2722	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.010000	0.427861	84(CTTTTTATGCGC,+,0.00)
mm_70041.1	chr7	142577771	142577971	-	1	NA	NA	NA	275	NR_130974	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.040000	0.587065	
mm_115256.1	chr13	110399725	110399925	+	1	NA	NA	NA	4781	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.030000	0.472637	
mm_106673.1	chr11	121703207	121703407	-	1	NA	NA	NA	880	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.045000	0.567164	
mm_46696.1	chr5	110101123	110101323	-	1	NA	NA	NA	664	NM_001281812	403178	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0.030000	0.626866	
mm_157087.1	chrX	9436257	9436457	-	1	NA	NA	NA	32967	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.422886	
mm_97630.1	chr11	78959606	78959806	+	1	NA	NA	NA	25218	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.020000	0.542289	
mm_163756.1	chr13	119790722	119790922	-	1	NA	NA	NA	-16	NM_001302549	72465	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0.110000	0.756219	
mm_45223.1	chr5	53378565	53378765	-	1	NA	NA	NA	111559	NM_001145433	66278	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.015000	0.587065	
mm_51990.1	chr6	92091452	92091652	+	1	NA	NA	NA	134	NM_011630	22026	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.150000	0.776119	
mm_33142.1	chr4	125124911	125125111	+	1	NA	NA	NA	2870	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.005000	0.597015	
mm_37695.1	chr4	129263379	129263579	-	1	NA	NA	NA	-2075	NM_001285867	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.030000	0.621891	
mm_65515.1	chr7	25755035	25755235	-	1	NA	NA	NA	-415	NM_144922	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.065000	0.567164	
mm_76608.1	chr8	90816987	90817187	-	1	NA	NA	NA	-11748	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.015000	0.517413	
mm_96973.1	chr11	70651012	70651212	+	1	NA	NA	NA	3538	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.005000	0.592040	
mm_155572.1	chrX	77510951	77511151	+	1	NA	NA	NA	-176	NM_020601	21372	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	0.135000	0.761194	
mm_66759.1	chr7	46715802	46716002	-	1	NA	NA	NA	-226	NM_011315	20210	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	0.010000	0.402985	
mm_88011.1	chr10	67126992	67127192	+	1	NA	NA	NA	-166	NM_207221	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.185000	0.796020	
mm_52382.1	chr6	113147861	113148061	+	1	NA	NA	NA	43026	NM_173005	72895	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0.020000	0.437811	
mm_170351.1	chr1	85109376	85109576	-	1	NA	NA	NA	377	NM_213615	381287	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.010000	0.542289	
mm_36696.1	chr4	96663938	96664138	-	1	NA	NA	NA	81	NM_010007	13109	Mm.12838	NM_010007	ENSMUSG00000052520	Cyp2j5	-	cytochrome P450, family 2, subfamily j, polypeptide 5	protein-coding	0.000000	0.487562	
mm_4767.1	chr1	182484104	182484304	+	1	NA	NA	NA	33279	NM_009794	12334	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.035000	0.606965	
mm_85460.1	chr9	105480088	105480288	-	1	NA	NA	NA	14945	NM_175025	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.000000	0.338308	20(GTCTAGTAAAGG,-,0.00)
mm_9909.1	chr1	187215390	187215590	-	1	NA	NA	NA	-21	NM_026367	67769	Mm.138321	NM_026367	ENSMUSG00000039210	Gpatch2	5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2	G patch domain containing 2	protein-coding	0.070000	0.597015	
mm_170127.1	chr17	39847031	39847231	+	1	NA	NA	NA	4134	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.105000	0.621891	
mm_170797.1	chr2	175435704	175435904	-	1	NA	NA	NA	-27	NM_001101804	668039	Mm.466613	NM_001101804	ENSMUSG00000078881	Gm14434	OTTMUSG00000016611	predicted gene 14434	protein-coding	0.015000	0.497512	
mm_58006.1	chr6	136449357	136449557	-	1	NA	NA	NA	-33888	NM_001201390	100502936	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	0.040000	0.572139	
mm_131716.1	chr16	21333270	21333470	+	1	NA	NA	NA	-14	NR_131983	76222	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0.125000	0.711443	
mm_139206.1	chr17	47702802	47703002	+	1	NA	NA	NA	-906	NR_045913	100126242	Mm.392746	NR_045912	ENSMUSG00000086930	Frs3os	4930417B13Rik|Gm14873|OTTMUSG00000018358	fibroblast growth factor receptor substrate 3, opposite strand	ncRNA	0.015000	0.577114	
mm_28421.1	chr3	90433491	90433691	-	1	NA	NA	NA	45	NM_145540	229543	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	0.115000	0.646766	
mm_148487.1	chr19	4151482	4151682	+	1	NA	NA	NA	2919	NM_011778	23789	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0.010000	0.532338	
mm_143491.1	chr17	71452781	71452981	-	1	NA	NA	NA	22462	NM_028887	74355	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0.005000	0.373134	
mm_56348.1	chr6	92943426	92943626	-	1	NA	NA	NA	2944	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.100000	0.706468	
mm_92318.1	chr10	75517778	75517978	-	1	NA	NA	NA	94	NM_001347201	68778	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.040000	0.611940	
mm_80239.1	chr9	72693954	72694154	+	1	NA	NA	NA	31707	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.045000	0.522388	
mm_124222.1	chr14	100284733	100284933	-	1	NA	NA	NA	-135037	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.075000	0.681592	
mm_165516.1	chr2	173275249	173275449	+	1	NA	NA	NA	1184	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.040000	0.532338	-24(GGCTATTTATAG,-,0.00),-22(CTATTTATAGGA,+,0.00)
mm_132303.1	chr16	33523615	33523815	+	1	NA	NA	NA	5120	NM_001083902	171286	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.025000	0.467662	
mm_163098.1	chr11	69735156	69735356	-	1	NA	NA	NA	23377	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.010000	0.537313	
mm_52349.1	chr6	111453573	111453773	+	1	NA	NA	NA	-757035	NR_027865	67336	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA	0.005000	0.477612	
mm_147840.1	chr18	62615620	62615820	-	1	NA	NA	NA	-19456	NM_001001803	408198	Mm.478742	NM_001001803	ENSMUSG00000060201	Spink7	EG408198|Ecg2	serine peptidase inhibitor, Kazal type 7 (putative)	protein-coding	0.005000	0.517413	
mm_113048.1	chr13	23591404	23591604	+	1	NA	NA	NA	-5534	NM_001290530	319179	Mm.440391	NM_178194	ENSMUSG00000047246	Hist1h2be	-	histone cluster 1, H2be	protein-coding	0.020000	0.487562	
mm_72944.1	chr8	91800318	91800518	+	1	NA	NA	NA	1236	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.095000	0.646766	
mm_170779.1	chr2	170701404	170701604	-	1	NA	NA	NA	-30303	NM_029761	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0.005000	0.552239	-39(TCTTTAAGAGAG,+,0.00)
mm_79776.1	chr9	62845902	62846102	+	1	NA	NA	NA	7215	NM_001033175	76524	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.020000	0.582090	
mm_70306.1	chr8	4166475	4166675	+	1	NA	NA	NA	8	NM_001346730	213027	Mm.437106	NM_153536	ENSMUSG00000011832	Evi5l	1700084G18Rik|2310039H16Rik|3110007G05Rik|B130050I23Rik	ecotropic viral integration site 5 like	protein-coding	0.085000	0.691542	
mm_172783.1	chr8	99467023	99467223	+	1	NA	NA	NA	50449	NR_132435	234624	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	0.070000	0.661692	
mm_61929.1	chr7	90165427	90165627	+	1	NA	NA	NA	35295	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.010000	0.278607	
mm_107809.1	chr12	65049093	65049293	+	1	NA	NA	NA	12859	NM_177806	328110	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	0.000000	0.393035	
mm_8142.1	chr1	136280492	136280692	-	1	NA	NA	NA	-19719	NM_001101516	383563	Mm.40367	NM_001101516	ENSMUSG00000052759	Gpr25	Gm1300	G protein-coupled receptor 25	protein-coding	0.000000	0.492537	
mm_130494.1	chr15	98807821	98808021	-	1	NA	NA	NA	4	NM_001013741	13199	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.100000	0.716418	-12(GGGTATATATAG,-,0.00)
mm_115606.1	chr13	11991516	11991716	-	1	NA	NA	NA	115329	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.000000	0.363184	
mm_126107.1	chr15	78247966	78248166	+	1	NA	NA	NA	3255	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.000000	0.547264	
mm_71291.1	chr8	41044063	41044263	+	1	NA	NA	NA	-2232	NM_001005865	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.035000	0.497512	
mm_70837.1	chr8	23272461	23272661	+	1	NA	NA	NA	-15481	NM_001042484	57437	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	0.020000	0.522388	
mm_126950.1	chr15	92161175	92161375	+	1	NA	NA	NA	-82	NM_001159647	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.010000	0.472637	
mm_73575.1	chr8	109778521	109778721	+	1	NA	NA	NA	38	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0.125000	0.681592	
mm_123943.1	chr14	73376498	73376698	-	1	NA	NA	NA	8673	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.015000	0.328358	
mm_130710.1	chr15	100732626	100732826	-	1	NA	NA	NA	11	NR_045781	619313	Mm.123436	NR_045781		I730030J21Rik	-	RIKEN cDNA I730030J21 gene	ncRNA	0.015000	0.482587	
mm_114446.1	chr13	66918473	66918673	+	1	NA	NA	NA	13158	NM_001177750	100038538	Mm.405005	NM_001177750	ENSMUSG00000074826	Gm10767	ENSMUSG00000074826	predicted gene 10767	protein-coding	0.000000	0.512438	-36(CACTATAAAAGG,-,0.00)
mm_163180.1	chr11	89841203	89841403	-	1	NA	NA	NA	-144367	NM_001327810	382543	Mm.60997	NM_172534	ENSMUSG00000047773	Ankfn1	4932411E22Rik|Gm1175|nmf9	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding	0.010000	0.502488	
mm_16876.1	chr2	12419310	12419510	-	1	NA	NA	NA	50	NM_024185	66960	Mm.34059	NM_024185	ENSMUSG00000026767	Fam188a	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958	family with sequence similarity 188, member A	protein-coding	0.100000	0.681592	
mm_57056.1	chr6	122486178	122486378	-	1	NA	NA	NA	27	NM_027664	108653	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	0.125000	0.756219	
mm_107490.1	chr12	38781011	38781211	+	1	NA	NA	NA	1029	NM_007960	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.025000	0.482587	
mm_77719.1	chr8	126595865	126596065	-	1	NA	NA	NA	-2529	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.020000	0.537313	
mm_71835.1	chr8	68901152	68901352	+	1	NA	NA	NA	20697	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.035000	0.502488	
mm_146604.1	chr18	9552599	9552799	-	1	NA	NA	NA	66770	NM_007593	26369	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	0.005000	0.532338	
mm_33308.1	chr4	129058010	129058210	+	1	NA	NA	NA	-161	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.145000	0.771144	
mm_40853.1	chr5	73502532	73502732	+	1	NA	NA	NA	11606	NM_178896	100737	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.035000	0.597015	
mm_148065.1	chr18	72327554	72327754	-	1	NA	NA	NA	23415	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.005000	0.407960	
mm_166370.1	chr5	125389757	125389957	+	1	NA	NA	NA	160	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.100000	0.616915	-80(CTTTATATAGTC,+,0.00)
mm_68794.1	chr7	123500441	123500641	-	1	NA	NA	NA	-92	NM_001081329	210162	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	0.140000	0.761194	
mm_27209.1	chr3	35925516	35925716	-	1	NA	NA	NA	4458	NM_033623	114893	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.020000	0.417910	
mm_44537.1	chr5	24540290	24540490	-	1	NA	NA	NA	67	NM_080444	117590	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	0.015000	0.572139	
mm_7821.1	chr1	132007928	132008128	-	1	NA	NA	NA	423	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.115000	0.776119	
mm_84303.1	chr9	63399183	63399383	-	1	NA	NA	NA	-39	NM_027090	69478	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	0.110000	0.786070	
mm_37495.1	chr4	123665378	123665578	-	1	NA	NA	NA	-403	NR_136925	102633214	Mm.399387	NR_136925		Gm12925	OTTMUSG00000009214	predicted gene 12925	ncRNA	0.035000	0.512438	
mm_1143.1	chr1	60713955	60714155	+	1	NA	NA	NA	-32333	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.015000	0.437811	-8(CTCTCTTTAAGC,-,0.00)
mm_149648.1	chr19	18581334	18581534	+	1	NA	NA	NA	50379	NM_017375	20409	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.035000	0.512438	
mm_29788.1	chr3	127541388	127541588	-	1	NA	NA	NA	-3740	NR_030403	723948		NR_030403	ENSMUSG00000076252	Mir302b	Mirn302b|mir-302b	microRNA 302b	ncRNA	0.015000	0.447761	
mm_89005.1	chr10	81620985	81621185	+	1	NA	NA	NA	6237	NM_001163430	50721	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0.015000	0.557214	
mm_156856.1	chrX	164401717	164401917	+	1	NA	NA	NA	-17970	NM_011081	18700	Mm.3781	NM_011081	ENSMUSG00000031381	Piga	AI194334|Pig-a	phosphatidylinositol glycan anchor biosynthesis, class A	protein-coding	0.005000	0.417910	
mm_19546.1	chr2	98662884	98663084	-	1	NA	NA	NA	1195327	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.025000	0.353234	
mm_83596.1	chr9	48494293	48494493	-	1	NA	NA	NA	937	NM_001326355	67010	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	0.005000	0.432836	-100(CTTCCTAAAAGG,-,0.00)
mm_25085.1	chr3	100489434	100489634	+	1	NA	NA	NA	-342	NM_001142952	74645	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.060000	0.582090	
mm_89195.1	chr10	86347578	86347778	+	1	NA	NA	NA	47266	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.005000	0.467662	
mm_119202.1	chr14	32833861	32834061	+	1	NA	NA	NA	-1	NM_001164485	105511	Mm.32231	NM_001164485	ENSMUSG00000078127	Fam170b	4922501K12Rik|AI449756	family with sequence similarity 170, member B	protein-coding	0.015000	0.542289	
mm_21770.1	chr2	164844620	164844820	-	1	NA	NA	NA	10947	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.050000	0.606965	
mm_4561.1	chr1	177447095	177447295	+	1	NA	NA	NA	1374	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.015000	0.512438	
mm_145275.1	chr18	53050256	53050456	+	1	NA	NA	NA	-126009	NM_026386	67804	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.010000	0.427861	
mm_144778.1	chr18	35829746	35829946	+	1	NA	NA	NA	28	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.140000	0.751244	
mm_54628.1	chr6	38689443	38689643	-	1	NA	NA	NA	26474	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.015000	0.402985	
mm_52422.1	chr6	113471397	113471597	+	1	NA	NA	NA	42	NM_134159	171095	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	0.025000	0.631841	
mm_123088.1	chr14	55758237	55758437	-	1	NA	NA	NA	87	NM_009894	12684	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	0.005000	0.522388	
mm_84734.1	chr9	75072399	75072599	-	1	NA	NA	NA	1293	NM_010864	17918	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	0.015000	0.457711	
mm_45035.1	chr5	39614983	39615183	-	1	NA	NA	NA	-11509	NR_045416	75095	Mm.332354	NR_045416	ENSMUSG00000106741	4930513D17Rik	-	RIKEN cDNA 4930513D17 gene	ncRNA	0.020000	0.557214	
mm_165888.1	chr4	43655439	43655639	+	1	NA	NA	NA	906	NM_026871	68917	Mm.25285	NM_026871	ENSMUSG00000028470	Hint2	1190005L05Rik	histidine triad nucleotide binding protein 2	protein-coding	0.015000	0.398010	
mm_84164.1	chr9	59617012	59617212	-	1	NA	NA	NA	-172	NR_038075	67287	Mm.439943	NM_029922	ENSMUSG00000025237	Parp6	1700119G14Rik|2310028P13Rik|3110038K10Rik|ARTD17|C030013N01Rik|PARP-6	poly (ADP-ribose) polymerase family, member 6	protein-coding	0.090000	0.606965	
mm_59994.1	chr7	30563224	30563424	+	1	NA	NA	NA	-16	NM_170760	233073	Mm.34790	NM_170760	ENSMUSG00000078765	U2af1l4	AA407033|AF419339|AI451269|AW553050|U2af26	U2 small nuclear RNA auxiliary factor 1-like 4	protein-coding	0.075000	0.537313	
mm_122198.1	chr14	31781360	31781560	-	1	NA	NA	NA	48955	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.025000	0.442786	
mm_83561.1	chr9	46243350	46243550	-	1	NA	NA	NA	2606	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.015000	0.572139	
mm_101884.1	chr11	48945401	48945601	-	1	NA	NA	NA	909	NM_001281472	621823	Mm.440151	NM_001281472	ENSMUSG00000078153	Psme2b	PA28b-p|PA28b2|Psme2-like|Psme2b-ps	protease (prosome, macropain) activator subunit 2B	protein-coding	0.030000	0.512438	
mm_164693.1	chr17	48234766	48234966	+	1	NA	NA	NA	2127	NM_021406	58217	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	0.005000	0.462687	
mm_9253.1	chr1	171531574	171531774	-	1	NA	NA	NA	3620	NM_010584	16429	Mm.247426	NM_010584	ENSMUSG00000038209	Itln1	IntL|Itln|Itln2|Itln3|Itln5|Itlna|Lfr	intelectin 1 (galactofuranose binding)	protein-coding	0.025000	0.557214	
mm_148400.1	chr19	3851706	3851906	+	1	NA	NA	NA	33	NR_073190	12660	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.140000	0.706468	
mm_23625.1	chr3	65958615	65958815	+	1	NA	NA	NA	-490	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.035000	0.457711	
mm_172465.1	chr7	42692699	42692899	-	1	NA	NA	NA	-81	NM_001008427	434179	Mm.284947	NM_001008427	ENSMUSG00000069727	Zfp975	EG434179|Gm5595|mszf88	zinc finger protein 975	protein-coding	0.030000	0.542289	
mm_104747.1	chr11	98463327	98463527	-	1	NA	NA	NA	16593	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.000000	0.432836	
mm_52138.1	chr6	97956944	97957144	+	1	NA	NA	NA	27227	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.015000	0.462687	
mm_91290.1	chr10	24842713	24842913	-	1	NA	NA	NA	-6618	NM_134005	209558	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	0.005000	0.398010	
mm_52210.1	chr6	101271921	101272121	+	1	NA	NA	NA	105876	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.035000	0.527363	
mm_43335.1	chr5	135023407	135023607	+	1	NA	NA	NA	25	NR_133683	20907	Mm.6225	NM_016801	ENSMUSG00000007207	Stx1a	HPC-1	syntaxin 1A (brain)	protein-coding	0.105000	0.721393	
mm_119017.1	chr14	30008856	30009056	+	1	NA	NA	NA	-44	NM_001136240	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.110000	0.726368	
mm_114103.1	chr13	54731683	54731883	+	1	NA	NA	NA	18091	NM_001316710	26913	Mm.41812	NM_012014	ENSMUSG00000069227	Gprin1	GRIN1|Z16	G protein-regulated inducer of neurite outgrowth 1	protein-coding	0.010000	0.487562	
mm_130709.1	chr15	100729254	100729454	-	1	NA	NA	NA	22	NM_001161767	207839	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	0.125000	0.741294	
mm_86871.1	chr10	21995248	21995448	+	1	NA	NA	NA	682	NM_011361	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.030000	0.343284	
mm_36073.1	chr4	58008979	58009179	-	1	NA	NA	NA	45	NM_026132	67402	Mm.87357	NM_026132	ENSMUSG00000038709	Txndc8	4930429J24Rik|Sptrx-3|Sptrx3|Trx6	thioredoxin domain containing 8	protein-coding	0.005000	0.432836	
mm_84241.1	chr9	62341060	62341260	-	1	NA	NA	NA	-183	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.080000	0.696517	
mm_41601.1	chr5	96209376	96209576	+	1	NA	NA	NA	-639	NM_001039084	94061	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	0.025000	0.432836	
mm_129324.1	chr15	77769783	77769983	-	1	NA	NA	NA	-14654	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.055000	0.601990	
mm_82121.1	chr9	123478613	123478813	+	1	NA	NA	NA	12	NM_013860	29806	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.190000	0.850746	
mm_54004.1	chr6	7693114	7693314	-	1	NA	NA	NA	-32	NM_012055	27053	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0.090000	0.671642	
mm_10027.1	chr1	192099192	192099392	-	1	NA	NA	NA	-6693	NM_011633	22033	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.005000	0.318408	82(TACTTTAAAAGC,-,0.00),83(ACTTTAAAAGCC,+,0.00)
mm_50020.1	chr6	41115946	41116146	+	1	NA	NA	NA	-80537	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.010000	0.517413	
mm_16568.1	chr2	3418943	3419143	-	1	NA	NA	NA	3605	NM_008579	104362	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	0.120000	0.661692	
mm_11137.1	chr2	28469744	28469944	+	1	NA	NA	NA	1778	NM_001166031	118451	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	0.025000	0.577114	
mm_52859.1	chr6	122294003	122294203	+	1	NA	NA	NA	-11270	NM_016970	50928	Mm.20434	NM_016970	ENSMUSG00000030114	Klrg1	2F1-Ag|MAFA|MAFA-L	killer cell lectin-like receptor subfamily G, member 1	protein-coding	0.005000	0.457711	
mm_85473.1	chr9	105819454	105819654	-	1	NA	NA	NA	8531	NM_001102607	245026	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0.035000	0.542289	
mm_84292.1	chr9	63281132	63281332	-	1	NA	NA	NA	96620	NM_011840	23938	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	0.005000	0.442786	
mm_41652.1	chr5	98254228	98254428	+	1	NA	NA	NA	144	NM_001277268	14176	Mm.5055	NM_010203	ENSMUSG00000029337	Fgf5	Fgf-5|HBGF-5|angora|go	fibroblast growth factor 5	protein-coding	0.090000	0.706468	
mm_7936.1	chr1	133914526	133914726	-	1	NA	NA	NA	-6627	NM_001160420	269120	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	0.025000	0.542289	
mm_167664.1	chr9	71896016	71896216	-	1	NA	NA	NA	-20	NM_001253863	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.000000	0.427861	
mm_65897.1	chr7	30187176	30187376	-	1	NA	NA	NA	3105	NM_009944	12865	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	0.005000	0.562189	
mm_13612.1	chr2	113405021	113405221	+	1	NA	NA	NA	-35943	NM_001285459	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.010000	0.597015	
mm_141912.1	chr17	34981695	34981895	-	1	NA	NA	NA	-59	NM_001110101	27756	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.080000	0.562189	
mm_9639.1	chr1	177071235	177071435	-	1	NA	NA	NA	177432	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.005000	0.373134	
mm_29183.1	chr3	106542078	106542278	-	1	NA	NA	NA	-5620	NM_001286986	67171	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0.010000	0.353234	
mm_153026.1	chr19	31664264	31664464	-	1	NA	NA	NA	6	NM_011160	19091	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0.070000	0.651741	
mm_100776.1	chr11	4803913	4804113	-	1	NA	NA	NA	29122	NM_001252253	18016	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	0.025000	0.467662	
mm_118052.1	chr13	101739817	101740017	-	1	NA	NA	NA	28300	NM_001077495	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.005000	0.437811	
mm_144091.1	chr18	3336596	3336796	+	1	NA	NA	NA	280	NR_033457	633947	Mm.461446	NR_033457	ENSMUSG00000097746	Gm6225	EG621440	predicted gene 6225	ncRNA	0.035000	0.537313	
mm_69893.1	chr7	141637581	141637781	-	1	NA	NA	NA	16980	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.010000	0.552239	
mm_169050.1	chr13	17949514	17949714	+	1	NA	NA	NA	-5397	NM_019491	56044	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0.040000	0.467662	
mm_38117.1	chr4	134540785	134540985	-	1	NA	NA	NA	-5498	NM_029759	76824	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	0.025000	0.582090	
mm_127208.1	chr15	99224499	99224699	+	1	NA	NA	NA	-377	NM_010601	16512	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0.095000	0.716418	-85(GTCTCTTTAAGG,-,0.00),-83(CTCTTTAAGGAG,+,0.00)
mm_147639.1	chr18	60269526	60269726	-	1	NA	NA	NA	3641	NM_001034859	225594	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	0.005000	0.373134	
mm_111935.1	chr12	108893265	108893465	-	1	NA	NA	NA	-154	NM_011710	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.005000	0.417910	
mm_116336.1	chr13	38109038	38109238	-	1	NA	NA	NA	-42156	NM_023842	109620	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding	0.030000	0.552239	
mm_165801.1	chr3	142881623	142881823	-	1	NA	NA	NA	281	NM_178654	109333	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	0.130000	0.756219	
mm_75465.1	chr8	47948266	47948466	-	1	NA	NA	NA	42185	NM_133791	52357	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.015000	0.422886	
mm_57500.1	chr6	125379804	125380004	-	1	NA	NA	NA	600	NM_198604	213522	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.015000	0.606965	-98(TCCCATTAAGGG,-,0.00),-96(CCATTAAGGGCC,+,0.00)
mm_51690.1	chr6	86526582	86526782	+	1	NA	NA	NA	-517	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.155000	0.815920	
mm_94770.1	chr11	21239191	21239391	+	1	NA	NA	NA	259	NM_001290628	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.155000	0.810945	
mm_110908.1	chr12	75928826	75929026	-	1	NA	NA	NA	19823	NR_039560	100628610		NR_039560	ENSMUSG00000092922	Mir5101	mmu-mir-5101|mu-mir-5101	microRNA 5101	ncRNA	0.000000	0.507463	
mm_28804.1	chr3	96238883	96239083	-	1	NA	NA	NA	144	NM_054045	97114	Mm.358797	NM_054045	ENSMUSG00000081058	Hist2h3c2	H3-614|H3.2-614|Hist2h3c2-ps|Hist2h3ca1|M32461	histone cluster 2, H3c2	protein-coding	0.130000	0.686567	-35(GCGCCTATAAAG,-,0.00),-33(GCCTATAAAGGC,+,0.00),-33(GCCTATAAAGGC,-,0.00)
mm_59631.1	chr7	28156972	28157172	+	1	NA	NA	NA	-12676	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.040000	0.597015	
mm_55366.1	chr6	57535406	57535606	-	1	NA	NA	NA	-80	NM_175523	243382	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.030000	0.472637	
mm_164114.1	chr15	31342207	31342407	+	1	NA	NA	NA	25452	NM_001164441	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.005000	0.517413	
mm_20027.1	chr2	119473766	119473966	-	1	NA	NA	NA	3763	NM_026574	68142	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	0.000000	0.402985	
mm_33267.1	chr4	127371658	127371858	+	1	NA	NA	NA	-13594	NM_010291	14622	Mm.26859	NM_010291	ENSMUSG00000042357	Gjb5	Cnx31.1|Cx31.1|Gjb-5	gap junction protein, beta 5	protein-coding	0.010000	0.532338	
mm_88635.1	chr10	79890811	79891011	+	1	NA	NA	NA	58	NM_001291915	11537	Mm.4407	NM_013459	ENSMUSG00000061780	Cfd	Adn|DF	complement factor D (adipsin)	protein-coding	0.015000	0.582090	
mm_19019.1	chr2	76938308	76938508	-	1	NA	NA	NA	44139	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.035000	0.492537	
mm_46814.1	chr5	113138033	113138233	-	1	NA	NA	NA	452	NM_001347397	243219	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.065000	0.611940	
mm_89912.1	chr10	111174780	111174980	+	1	NA	NA	NA	10078	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.000000	0.323383	-68(CCTTTTAAATAA,+,0.00)
mm_84277.1	chr9	62811526	62811726	-	1	NA	NA	NA	22	NM_010193	14155	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.140000	0.781095	
mm_41637.1	chr5	97700707	97700907	+	1	NA	NA	NA	-243799	NM_010294	14626	Mm.61206	NM_010294	ENSMUSG00000050553	Gk2	GKTA|Gk-rs2	glycerol kinase 2	protein-coding	0.000000	0.437811	
mm_115240.1	chr13	109952007	109952207	+	1	NA	NA	NA	48298	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.010000	0.298507	
mm_62100.1	chr7	96211731	96211931	+	1	NA	NA	NA	160	NM_001310760	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.050000	0.572139	
mm_36682.1	chr4	96547707	96547907	-	1	NA	NA	NA	5844	NM_010008	13110	Mm.98200	NM_010008	ENSMUSG00000052914	Cyp2j6	-	cytochrome P450, family 2, subfamily j, polypeptide 6	protein-coding	0.015000	0.437811	
mm_72233.1	chr8	74873177	74873377	+	1	NA	NA	NA	103	NM_001294278	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	0.005000	0.512438	
mm_149381.1	chr19	11380787	11380987	+	1	NA	NA	NA	5399	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.015000	0.407960	
mm_80031.1	chr9	68728169	68728369	+	1	NA	NA	NA	-37077	NR_033299	320440	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.005000	0.373134	
mm_138035.1	chr17	33919585	33919785	+	1	NA	NA	NA	207	NM_009318	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.020000	0.517413	
mm_38002.1	chr4	133686584	133686784	-	1	NA	NA	NA	-14037	NM_001145956	230801	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.030000	0.621891	
mm_107872.1	chr12	69930805	69931005	+	1	NA	NA	NA	-32504	NR_036607	100040999	Mm.394588	NR_036607	ENSMUSG00000079076	Gm3086	-	RuvB-like protein 1 pseudogene	pseudo	0.020000	0.442786	
mm_50637.1	chr6	51329777	51329977	+	1	NA	NA	NA	-49833	NR_110455	625167	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	0.010000	0.502488	
mm_93463.1	chr10	110896420	110896620	-	1	NA	NA	NA	-13	NR_045979	75630	Mm.392786	NR_045979	ENSMUSG00000101801	1700020G17Rik	4930480D05Rik	RIKEN cDNA 1700020G17 gene	ncRNA	0.015000	0.492537	
mm_9919.1	chr1	189343628	189343828	-	1	NA	NA	NA	-21	NM_010607	16526	Mm.33304	NM_010607	ENSMUSG00000037624	Kcnk2	A430027H14Rik|AI848635|TREK-1	potassium channel, subfamily K, member 2	protein-coding	0.105000	0.756219	
mm_167626.1	chr9	60687348	60687548	-	1	NA	NA	NA	86	NM_001311095	102747	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0.015000	0.427861	
mm_74823.1	chr8	23095455	23095655	-	1	NA	NA	NA	37296	NR_102385	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.030000	0.373134	
mm_144092.1	chr18	3336635	3336835	+	1	NA	NA	NA	319	NR_033457	633947	Mm.461446	NR_033457	ENSMUSG00000097746	Gm6225	EG621440	predicted gene 6225	ncRNA	0.050000	0.577114	
mm_35813.1	chr4	46941093	46941293	-	1	NA	NA	NA	50521	NM_001081141	242425	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	0.005000	0.437811	
mm_30517.1	chr3	158543262	158543462	-	1	NA	NA	NA	18859	NM_001291453	242274	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding	0.000000	0.338308	-31(CCATTTATACAG,+,0.00)
mm_141194.1	chr17	27020569	27020769	-	1	NA	NA	NA	2634	NM_001251881	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.005000	0.517413	
mm_31807.1	chr4	65604918	65605118	+	1	NA	NA	NA	32	NM_001161782	69807	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0.105000	0.701493	
mm_108402.1	chr12	81532870	81533070	+	1	NA	NA	NA	-59	NM_001309848	105940408		NM_001309847	ENSMUSG00000021139	Synj2bp-cox16	ARIP2a	Synj2bp-cox16 readthrough	protein-coding	0.050000	0.557214	
mm_114718.1	chr13	83663626	83663826	+	1	NA	NA	NA	-64380	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.005000	0.313433	
mm_62831.1	chr7	113765685	113765885	+	1	NA	NA	NA	-213	NM_145584	233744	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.045000	0.557214	
mm_169192.1	chr13	66108502	66108702	-	1	NA	NA	NA	-4851	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.000000	0.472637	
mm_79833.1	chr9	64797608	64797808	+	1	NA	NA	NA	-13303	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.020000	0.477612	
mm_9707.1	chr1	179517883	179518083	-	1	NA	NA	NA	20	NM_027188	69726	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.080000	0.611940	
mm_366.1	chr1	33911481	33911681	+	1	NA	NA	NA	3356	NM_001276764	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.005000	0.328358	-7(TTTTTTAAAGCA,+,0.00)
mm_72666.1	chr8	84893905	84894105	+	1	NA	NA	NA	-84	NM_008097	270076	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	0.035000	0.542289	
mm_22882.1	chr3	29732732	29732932	+	1	NA	NA	NA	96088	NR_105796	102466637		NR_105796	ENSMUSG00000098315	Mir21b	Gm27951|mmu-mir-21b	microRNA 21b	ncRNA	0.010000	0.402985	
mm_127365.1	chr15	100695712	100695912	+	1	NA	NA	NA	-7892	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.010000	0.547264	
mm_130076.1	chr15	89373746	89373946	-	1	NA	NA	NA	-28	NM_001111288	100126824	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	0.090000	0.651741	
mm_139055.1	chr17	46383496	46383696	+	1	NA	NA	NA	-170	NM_207671	57908	Mm.439916	NM_021346	ENSMUSG00000015597	Zfp318	2610034E08Rik|D530032D06Rik|TZF|Znf318	zinc finger protein 318	protein-coding	0.150000	0.781095	
mm_153688.1	chr19	44396825	44397025	-	1	NA	NA	NA	10784	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.020000	0.373134	
mm_32398.1	chr4	106859638	106859838	+	1	NA	NA	NA	-51732	NM_198438	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.000000	0.542289	
mm_157498.1	chrX	48463036	48463236	-	1	NA	NA	NA	-4	NM_019680	56501	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|ENSMUSG00000053512|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	0.055000	0.592040	
mm_160351.1	chr8	21162179	21162379	+	1	NA	NA	NA	2	NM_207658	382059	Mm.42715	NM_207658	ENSMUSG00000074443	Defa22	Defcr22	defensin, alpha, 22	protein-coding	0.000000	0.507463	
mm_84741.1	chr9	75387379	75387579	-	1	NA	NA	NA	21880	NM_027418	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.035000	0.422886	55(CCATTTATACAT,+,0.00)
mm_36121.1	chr4	58912163	58912363	-	1	NA	NA	NA	462	NM_172381	230249	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|mKIAA0368	expressed sequence AI314180	protein-coding	0.155000	0.761194	
mm_79296.1	chr9	51656763	51656963	+	1	NA	NA	NA	-108489	NM_175535	244867	Mm.400352	NM_175535	ENSMUSG00000053199	Arhgap20	6530403F17Rik|A530023E23Rik|RARhoGAP|mKIAA1391	Rho GTPase activating protein 20	protein-coding	0.015000	0.427861	
mm_119619.1	chr14	51128839	51129039	+	1	NA	NA	NA	-129	NM_030098	78416	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	0.005000	0.427861	
mm_6587.1	chr1	75256735	75256935	-	1	NA	NA	NA	7373	NM_008985	19275	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	0.005000	0.432836	
mm_9760.1	chr1	180850762	180850962	-	1	NA	NA	NA	-289	NM_145943	208768	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.090000	0.661692	-34(GGCTATAAAGGG,-,0.00)
mm_18232.1	chr2	51934879	51935079	-	1	NA	NA	NA	30	NM_030243	71684	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	0.095000	0.636816	
mm_89473.1	chr10	93516835	93517035	+	1	NA	NA	NA	23098	NM_027908	71761	Mm.244518	NM_027908	ENSMUSG00000015890	Amdhd1	1300019J08Rik	amidohydrolase domain containing 1	protein-coding	0.000000	0.512438	
mm_15944.1	chr2	165874938	165875138	+	1	NA	NA	NA	3399	NM_001291158	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.020000	0.616915	
mm_166116.1	chr4	150139236	150139436	+	1	NA	NA	NA	-9636	NM_001085529	435818	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	OTTMUSG00000010396	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0.030000	0.547264	
mm_19076.1	chr2	77816805	77817005	-	1	NA	NA	NA	-89	NM_178723	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.130000	0.786070	
mm_154729.1	chrX	9442457	9442657	+	1	NA	NA	NA	26767	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.482587	
mm_81399.1	chr9	109007800	109008000	+	1	NA	NA	NA	15998	NM_173019	270198	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0.020000	0.572139	
mm_79835.1	chr9	64805978	64806178	+	1	NA	NA	NA	-4933	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.020000	0.502488	
mm_75582.1	chr8	61533444	61533644	-	1	NA	NA	NA	45810	NM_145595	234309	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.050000	0.587065	
mm_18311.1	chr2	54085415	54085615	-	1	NA	NA	NA	37	NM_023396	67874	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	0.090000	0.671642	
mm_86461.1	chr10	4387051	4387251	+	1	NA	NA	NA	957	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.135000	0.756219	
mm_20140.1	chr2	121413731	121413931	-	1	NA	NA	NA	-39	NM_153075	212670	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	0.135000	0.746269	
mm_77526.1	chr8	122986748	122986948	-	1	NA	NA	NA	55436	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.005000	0.398010	
mm_48273.1	chr5	137962949	137963149	-	1	NA	NA	NA	-90	NM_080450	118446	Mm.332771	NM_080450	ENSMUSG00000056966	Gjc3	Cx29|Gje1	gap junction protein, gamma 3	protein-coding	0.040000	0.552239	8(TCTTTTATGCTG,+,0.00)
mm_172454.1	chr7	35647283	35647483	-	1	NA	NA	NA	99	NM_019746	56330	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0.140000	0.716418	
mm_63141.1	chr7	123124561	123124761	+	1	NA	NA	NA	776	NM_144925	233833	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0.070000	0.512438	84(CCCTTTATAATC,+,0.00)
mm_131067.1	chr16	4639841	4640041	+	1	NA	NA	NA	-4	NM_139307	246154	Mm.482140	NM_139307	ENSMUSG00000039646	Vasn	2610528G05Rik|Atia|Slitl2	vasorin	protein-coding	0.055000	0.626866	
mm_93494.1	chr10	112160209	112160409	-	1	NA	NA	NA	-3312	NM_001310675	353025	Mm.194428	NM_178278	ENSMUSG00000035694	Caps2	D630005B03Rik	calcyphosphine 2	protein-coding	0.025000	0.487562	
mm_27794.1	chr3	75556832	75557032	-	1	NA	NA	NA	-80	NM_019745	56426	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	0.035000	0.527363	
mm_75819.1	chr8	70439485	70439685	-	1	NA	NA	NA	-12	NM_001004062	382056	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	0.105000	0.671642	
mm_4495.1	chr1	173641348	173641548	+	1	NA	NA	NA	10589	NM_175026	236312	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	0.000000	0.402985	
mm_139067.1	chr17	46623899	46624099	+	1	NA	NA	NA	5505	NM_175168	71461	Mm.181833	NM_175168	ENSMUSG00000023972	Ptk7	8430404F20Rik|chz|mPTK7/CCK4	PTK7 protein tyrosine kinase 7	protein-coding	0.010000	0.487562	
mm_172732.1	chr8	78139781	78139981	-	1	NA	NA	NA	-73461	NM_183096	73301	Mm.61243	NM_183096	ENSMUSG00000037101	Ttc29	1700031F13Rik	tetratricopeptide repeat domain 29	protein-coding	0.055000	0.492537	
mm_47809.1	chr5	133790712	133790912	-	1	NA	NA	NA	-308936	NM_030719	80909	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding	0.015000	0.457711	
mm_162859.1	chr10	91039951	91040151	+	1	NA	NA	NA	42692	NM_001042558	11783	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	0.020000	0.477612	
mm_64715.1	chr7	4635277	4635477	-	1	NA	NA	NA	-4895	NM_023440	68255	Mm.389784	NM_023440	ENSMUSG00000045282	Tmem86b	C330014O21Rik	transmembrane protein 86B	protein-coding	0.000000	0.268657	
mm_162592.1	chr1	181281937	181282137	+	1	NA	NA	NA	-70059	NM_145514	226757	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.025000	0.422886	
mm_135140.1	chr16	35853648	35853848	-	1	NA	NA	NA	17634	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.005000	0.412935	-18(TCTTTAAGACCC,+,0.00)
mm_107403.1	chr12	33374386	33374586	+	1	NA	NA	NA	20274	NR_131031	75836	Mm.410807	NR_131031	ENSMUSG00000085664	Atxn7l1os2	4930556N08Rik	ataxin 7-like 1, opposite strand 2	ncRNA	0.015000	0.328358	
mm_142365.1	chr17	44105710	44105910	-	1	NA	NA	NA	-2	NM_199016	224794	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90|mKIAA0879	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	0.165000	0.791045	
mm_77014.1	chr8	107588328	107588528	-	1	NA	NA	NA	54	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.105000	0.711443	
mm_13588.1	chr2	112454943	112455143	+	1	NA	NA	NA	18	NM_133749	73024	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	0.085000	0.641791	
mm_34346.1	chr4	144522138	144522338	+	1	NA	NA	NA	2416	NM_198662	381572	Mm.184290	NM_198662	ENSMUSG00000028593	9430007A20Rik	Aadacl4|Gm1034	RIKEN cDNA 9430007A20 gene	protein-coding	0.010000	0.427861	
mm_44358.1	chr5	17796894	17797094	-	1	NA	NA	NA	38902	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.333333	
mm_114562.1	chr13	74406893	74407093	+	1	NA	NA	NA	-72	NR_035409	100124641		NR_035409	ENSMUSG00000076033	Mir692-3	Mir692-2b|Mirn692-2b|mmu-mir-692-3	microRNA 692-3	ncRNA	0.025000	0.572139	
mm_61210.1	chr7	64185449	64185649	+	1	NA	NA	NA	90	NM_018752	17364	Mm.38875	NM_018752	ENSMUSG00000030523	Trpm1	4732499L03Rik|AI606771|Ltrpc1|Mlsn1	transient receptor potential cation channel, subfamily M, member 1	protein-coding	0.015000	0.601990	-31(TCCTCTTAAAGA,-,0.00),-30(CCTCTTAAAGAG,+,0.00)
mm_154490.1	chrM	5836	6036	-	1	NA	NA	NA	NA	NA									0.025000	0.457711	
mm_119715.1	chr14	53876601	53876801	+	1	NA	NA	NA	377228	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.512438	
mm_90513.1	chr10	128042802	128043002	+	1	NA	NA	NA	7556	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.000000	0.542289	51(TCCCCTAAAAAG,-,0.00)
mm_143654.1	chr17	79707409	79707609	-	1	NA	NA	NA	7532	NM_009994	13078	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0.010000	0.422886	
mm_98381.1	chr11	94133385	94133585	+	1	NA	NA	NA	-77969	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.025000	0.597015	
mm_44151.1	chr5	150295308	150295508	+	1	NA	NA	NA	35478	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.035000	0.482587	
mm_36180.1	chr4	62208450	62208650	-	1	NA	NA	NA	-4	NM_001290350	22696	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0.105000	0.696517	
mm_79814.1	chr9	64179219	64179419	+	1	NA	NA	NA	22	NM_183316	330959	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	0.085000	0.601990	59(GCGTCTAAAGGC,-,0.00)
mm_114954.1	chr13	96924617	96924817	+	1	NA	NA	NA	28	NM_001166065	218476	Mm.483490	NM_001166065	ENSMUSG00000091387	Gcnt4	C2gnt3|Gm279|Gm73	glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)	protein-coding	0.075000	0.641791	
mm_13896.1	chr2	120450638	120450838	+	1	NA	NA	NA	-12855	NM_001177799	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.005000	0.442786	
mm_147553.1	chr18	54956649	54956849	-	1	NA	NA	NA	33431	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.010000	0.492537	
mm_15708.1	chr2	164017378	164017578	+	1	NA	NA	NA	-7746	NM_001114079	381404	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	0.015000	0.477612	
mm_146041.1	chr18	69592863	69593063	+	1	NA	NA	NA	247242	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.020000	0.398010	
mm_50571.1	chr6	49051203	49051403	+	1	NA	NA	NA	14785	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.015000	0.427861	
mm_69502.1	chr7	134232035	134232235	-	1	NA	NA	NA	-7038	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.025000	0.497512	-89(GGCCATAAAAAT,-,0.00)
mm_37490.1	chr4	123613662	123613862	-	1	NA	NA	NA	-2658	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.020000	0.507463	
mm_39287.1	chr5	4005225	4005425	+	1	NA	NA	NA	77139	NM_194462	100986	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	0.025000	0.422886	
mm_167844.1	chrM	14316	14516	-	1	NA	NA	NA	NA	NA									0.045000	0.363184	
mm_59211.1	chr7	24531317	24531517	+	1	NA	NA	NA	769	NM_153134	210146	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	0.065000	0.552239	
mm_41771.1	chr5	103501496	103501696	+	1	NA	NA	NA	76404	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.010000	0.472637	
mm_61213.1	chr7	64287386	64287586	+	1	NA	NA	NA	-184	NM_172742	233315	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0.100000	0.646766	
mm_112433.1	chr13	4573982	4574182	+	1	NA	NA	NA	7	NM_029901	77337	Mm.27085	NM_029901	ENSMUSG00000021207	Akr1c21	9430025F20Rik|AI315367	aldo-keto reductase family 1, member C21	protein-coding	0.005000	0.388060	
mm_144683.1	chr18	34768183	34768383	+	1	NA	NA	NA	-8725	NM_001081256	277250	Mm.277906	NM_029518	ENSMUSG00000038773	Kdm3b	5830462I21Rik|JHDM2B|Jmjd1b|mKIAA1082	KDM3B lysine (K)-specific demethylase 3B	protein-coding	0.015000	0.636816	
mm_170854.1	chr2	180225784	180225984	-	1	NA	NA	NA	-25	NM_001081171	16776	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0.090000	0.731343	
mm_85734.1	chr9	108452677	108452877	-	1	NA	NA	NA	-7741	NM_133744	72454	Mm.46488	NM_133744	ENSMUSG00000049305	Ccdc71	2600016J21Rik	coiled-coil domain containing 71	protein-coding	0.035000	0.626866	
mm_38733.1	chr4	145244979	145245179	-	1	NA	NA	NA	1791	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.000000	0.467662	
mm_119117.1	chr14	31030543	31030743	+	1	NA	NA	NA	11505	NM_001081251	66923	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	0.000000	0.268657	54(CCTTTTCTAGTA,+,0.00)
mm_87337.1	chr10	43478537	43478737	+	1	NA	NA	NA	-503	NM_199028	331623	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.080000	0.691542	
mm_145913.1	chr18	66475533	66475733	+	1	NA	NA	NA	17029	NM_021451	58801	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.020000	0.492537	
mm_78398.1	chr9	28920378	28920578	+	1	NA	NA	NA	1042651	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.005000	0.412935	
mm_87995.1	chr10	66698161	66698361	+	1	NA	NA	NA	222123	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.030000	0.547264	
mm_60667.1	chr7	45017823	45018023	+	1	NA	NA	NA	-84	NM_009101	20130	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.040000	0.567164	
mm_62790.1	chr7	112679312	112679512	+	1	NA	NA	NA	92	NM_009346	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.180000	0.761194	
mm_119875.1	chr14	54723859	54724059	+	1	NA	NA	NA	-11785	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.005000	0.532338	
mm_20099.1	chr2	121036615	121036815	-	1	NA	NA	NA	162	NM_013513	13828	Mm.240051	NM_013513	ENSMUSG00000023216	Epb42	Epb4.2	erythrocyte membrane protein band 4.2	protein-coding	0.010000	0.552239	
mm_74028.1	chr8	121730488	121730688	+	1	NA	NA	NA	29	NM_020605	57340	Mm.306870	NM_020605	ENSMUSG00000025318	Jph3	JP-3|Jp3	junctophilin 3	protein-coding	0.060000	0.487562	
mm_27739.1	chr3	69093466	69093666	-	1	NA	NA	NA	33526	NM_008467	16649	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	0.015000	0.407960	
mm_147957.1	chr18	67057133	67057333	-	1	NA	NA	NA	-31065	NM_177137	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.005000	0.467662	
mm_5241.1	chr1	16104316	16104516	-	1	NA	NA	NA	17	NM_011291	19989	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	0.045000	0.497512	
mm_50042.1	chr6	41151056	41151256	+	1	NA	NA	NA	-115647	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.462687	
mm_885.1	chr1	52637411	52637611	+	1	NA	NA	NA	6806	NM_001142647	227094	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	0.005000	0.417910	
mm_17215.1	chr2	25493373	25493573	-	1	NA	NA	NA	438	NM_029958	77701	Mm.99123	NM_029958	ENSMUSG00000026943	Lcn12	9230102M18Rik	lipocalin 12	protein-coding	0.005000	0.582090	
mm_110596.1	chr12	56535099	56535299	-	1	NA	NA	NA	1709	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.065000	0.527363	
mm_78700.1	chr9	41217122	41217322	+	1	NA	NA	NA	11067	NR_040392	78500	Mm.275715	NR_040392	ENSMUSG00000100837	1700063D05Rik	-	RIKEN cDNA 1700063D05 gene	ncRNA	0.015000	0.567164	
mm_140003.1	chr17	73069341	73069541	+	1	NA	NA	NA	-38544	NM_001177968	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.010000	0.492537	
mm_150162.1	chr19	32387480	32387680	+	1	NA	NA	NA	874	NM_144792	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.070000	0.651741	
mm_85207.1	chr9	96787747	96787947	-	1	NA	NA	NA	22285	NR_102296	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	0.015000	0.502488	
mm_58789.1	chr7	16130161	16130361	+	1	NA	NA	NA	435	NM_148946	110891	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	0.035000	0.666667	
mm_137748.1	chr17	29393774	29393974	+	1	NA	NA	NA	32960	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.010000	0.527363	
mm_109990.1	chr12	15050301	15050501	-	1	NA	NA	NA	-12	NR_045960	73972	Mm.107680	NR_045960		4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA	0.000000	0.338308	
mm_71840.1	chr8	68904601	68904801	+	1	NA	NA	NA	24146	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.437811	
mm_23842.1	chr3	82380063	82380263	+	1	NA	NA	NA	22091	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0.010000	0.467662	-70(GTTTTTAAAGAG,+,0.00),-15(CACTATTTAGGG,-,0.00)
mm_137034.1	chr17	17890494	17890694	+	1	NA	NA	NA	2770	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.005000	0.383085	
mm_155622.1	chrX	83591840	83592040	+	1	NA	NA	NA	-104016	NM_021898	100502723	Mm.383210	NM_021898	ENSMUSG00000035522	Tsga8	Halap-X|Halapx	testis specific gene A8	protein-coding	0.005000	0.437811	
mm_106388.1	chr11	118569610	118569810	-	1	NA	NA	NA	92750	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.110000	0.741294	
mm_118096.1	chr13	103899486	103899686	-	1	NA	NA	NA	21000	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.020000	0.457711	
mm_50111.1	chr6	41533727	41533927	+	1	NA	NA	NA	12051	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.422886	
mm_71749.1	chr8	65209100	65209300	+	1	NA	NA	NA	-79663	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA	0.020000	0.457711	
mm_168340.1	chr11	120347111	120347311	-	1	NA	NA	NA	202	NR_105900	102465564		NR_105900	ENSMUSG00000098955	Mir6935	Gm27344|mmu-mir-6935	microRNA 6935	ncRNA	0.040000	0.592040	
mm_35179.1	chr4	15149664	15149864	-	1	NA	NA	NA	-633	NM_178617	69352	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	0.030000	0.522388	
mm_124760.1	chr15	6647545	6647745	+	1	NA	NA	NA	-60736	NM_030168	78757	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.010000	0.427861	
mm_78227.1	chr9	21588803	21589003	+	1	NA	NA	NA	-3819	NM_178619	69773	Mm.39704	NM_178619	ENSMUSG00000048429	Timm29	1810026J23Rik	translocase of inner mitochondrial membrane 29	protein-coding	0.000000	0.577114	
mm_120026.1	chr14	55824775	55824975	+	1	NA	NA	NA	80	NM_023699	73181	Mm.27908	NM_023699	ENSMUSG00000023411	Nfatc4	3110041H08Rik|AW107667|AW546455|Nfat3	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4	protein-coding	0.055000	0.582090	
mm_141755.1	chr17	34262952	34263152	-	1	NA	NA	NA	-175	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.020000	0.432836	43(GGGTTTAAAGAG,-,0.00)
mm_161455.1	chr15	75747598	75747798	-	1	NA	NA	NA	224	NM_194350	378435	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	0.135000	0.800995	
mm_2227.1	chr1	90857912	90858112	+	1	NA	NA	NA	-14041	NM_001243008	12835	Mm.7562	NM_009935	ENSMUSG00000048126	Col6a3	AI507288|Col6a-3	collagen, type VI, alpha 3	protein-coding	0.010000	0.567164	-69(TCATTTATACCC,+,0.00)
mm_129609.1	chr15	79932649	79932849	-	1	NA	NA	NA	-103	NM_144811	52609	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	0.110000	0.671642	
mm_94008.1	chr10	127620843	127621043	-	1	NA	NA	NA	205	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.055000	0.666667	
mm_46222.1	chr5	98943731	98943931	-	1	NA	NA	NA	89416	NM_001310677	110075	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0.010000	0.487562	
mm_23062.1	chr3	35932799	35932999	+	1	NA	NA	NA	67	NM_001205361	114893	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.175000	0.830846	
mm_86057.1	chr9	114564244	114564444	-	1	NA	NA	NA	25	NM_001042503	636931	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	0.070000	0.601990	
mm_43417.1	chr5	135984111	135984311	+	1	NA	NA	NA	4106	NM_011776	22788	Mm.1381	NM_011776	ENSMUSG00000004948	Zp3	Zp-3	zona pellucida glycoprotein 3	protein-coding	0.020000	0.577114	-85(GGGTTTATATGG,-,0.00)
mm_62286.1	chr7	99906240	99906440	+	1	NA	NA	NA	47122	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.005000	0.427861	
mm_3386.1	chr1	140245621	140245821	+	1	NA	NA	NA	-536	NM_001081027	240776	Mm.483845	NM_001081027	ENSMUSG00000052726	Kcnt2	E330038N15Rik|Slick	potassium channel, subfamily T, member 2	protein-coding	0.055000	0.631841	
mm_26881.1	chr3	17785512	17785712	-	1	NA	NA	NA	-4309	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.010000	0.472637	
mm_159601.1	chr4	128618410	128618610	-	1	NA	NA	NA	109	NM_205823	384059	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0.025000	0.572139	
mm_118956.1	chr14	27379574	27379774	+	1	NA	NA	NA	18285	NM_001289688	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.055000	0.567164	
mm_18553.1	chr2	65171702	65171902	-	1	NA	NA	NA	66824	NM_177025	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.005000	0.447761	
mm_133741.1	chr16	94010772	94010972	+	1	NA	NA	NA	-2035	NM_019500	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.000000	0.577114	
mm_98812.1	chr11	97188467	97188667	+	1	NA	NA	NA	-675	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.115000	0.646766	
mm_146853.1	chr18	24111999	24112199	-	1	NA	NA	NA	9720	NM_172625	225280	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0.015000	0.562189	
mm_151389.1	chr19	56397148	56397348	+	1	NA	NA	NA	119	NM_007611	12369	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.105000	0.706468	
mm_59335.1	chr7	25452004	25452204	+	1	NA	NA	NA	25521	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.005000	0.477612	
mm_90592.1	chr10	128278680	128278880	+	1	NA	NA	NA	8204	NM_019963	20847	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	0.040000	0.567164	
mm_10598.1	chr2	18677012	18677212	+	1	NA	NA	NA	94	NM_007552	12151	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	0.115000	0.686567	-87(TAGTATTAAAGG,-,0.00)
mm_131338.1	chr16	13358362	13358562	+	1	NA	NA	NA	41	NM_153588	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.020000	0.552239	
mm_90919.1	chr10	12614466	12614666	-	1	NA	NA	NA	247169	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.035000	0.447761	
mm_53303.1	chr6	129180548	129180748	+	1	NA	NA	NA	33	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.015000	0.492537	
mm_110225.1	chr12	28635833	28636033	-	1	NA	NA	NA	20	NM_011300	20115	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	0.080000	0.567164	
mm_13564.1	chr2	112266299	112266499	+	1	NA	NA	NA	85	NM_133649	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.040000	0.557214	-44(GCTCTTATACGC,+,0.00),-35(CGCCTGATAAGG,-,0.00)
mm_81580.1	chr9	110422398	110422598	+	1	NA	NA	NA	2690	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.000000	0.527363	
mm_69201.1	chr7	127387042	127387242	-	1	NA	NA	NA	24	NM_030226	78921	Mm.200950	NM_030226	ENSMUSG00000030823	9130019O22Rik	-	RIKEN cDNA 9130019O22 gene	protein-coding	0.025000	0.517413	
mm_72596.1	chr8	84414563	84414763	+	1	NA	NA	NA	-701	NM_001252060	12286	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.130000	0.666667	
mm_103282.1	chr11	72214903	72215103	-	1	NA	NA	NA	-135	NM_001163728	75304	Mm.340776	NM_001163728		4930563E22Rik	-	RIKEN cDNA 4930563E22 gene	protein-coding	0.100000	0.621891	
mm_45758.1	chr5	86890034	86890234	-	1	NA	NA	NA	16803	NM_153598	100727	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding	0.000000	0.398010	
mm_22287.1	chr2	180225742	180225942	-	1	NA	NA	NA	17	NM_001081171	16776	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0.120000	0.756219	
mm_27054.1	chr3	27316890	27317090	-	1	NA	NA	NA	-87	NM_009425	22035	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.025000	0.507463	
mm_49131.1	chr6	8948333	8948533	+	1	NA	NA	NA	-1586	NM_008751	18231	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.050000	0.606965	
mm_7593.1	chr1	125435649	125435849	-	1	NA	NA	NA	-22	NM_001205386	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.125000	0.701493	
mm_6123.1	chr1	64302885	64303085	-	1	NA	NA	NA	-181596	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.015000	0.497512	
mm_75127.1	chr8	34918398	34918598	-	1	NA	NA	NA	47192	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.035000	0.472637	
mm_61748.1	chr7	82678936	82679136	+	1	NA	NA	NA	30422	NM_175317	101592	Mm.238020	NM_175317	ENSMUSG00000038563	Efl1	4932434J20Rik|6030468D11Rik|AI451340|AU019507|AU022896|D7Ertd791e|Eftud1	elongation factor like GPTase 1	protein-coding	0.010000	0.368159	
mm_152305.1	chr19	9134944	9135144	-	1	NA	NA	NA	522	NM_025610	66514	Mm.272847	NM_025610	ENSMUSG00000024654	Asrgl1	2410004D18Rik|ALP|ALP1|AU040643|AW060375	asparaginase like 1	protein-coding	0.055000	0.572139	
mm_130577.1	chr15	99521145	99521345	-	1	NA	NA	NA	6920	NM_028224	72393	Mm.39760	NM_028224	ENSMUSG00000023011	Faim2	2900002L20Rik|Lfg|Lfg2|NMP25|Nmp35|Tmbim2	Fas apoptotic inhibitory molecule 2	protein-coding	0.045000	0.562189	
mm_76969.1	chr8	106280951	106281151	-	1	NA	NA	NA	-1178	NR_126091	75044	Mm.445896	NR_126090		4930506A18Rik	-	RIKEN cDNA 4930506A18 gene	ncRNA	0.020000	0.567164	
mm_109591.1	chr12	112632463	112632663	+	1	NA	NA	NA	-12265	NM_001161737	30954	Mm.289812	NM_013929	ENSMUSG00000064326	Siva1	CD27bp|Siva	SIVA1, apoptosis-inducing factor	protein-coding	0.015000	0.577114	
mm_30132.1	chr3	142144664	142144864	-	1	NA	NA	NA	24464	NM_001277217	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.010000	0.383085	-23(TCTTTAAGAGTG,+,0.00)
mm_159586.1	chr4	121622027	121622227	-	1	NA	NA	NA	-2	NM_001099309	666927	Mm.465133	NM_001099309	ENSMUSG00000078575	Gm12887	OTTMUSG00000008910	predicted gene 12887	protein-coding	0.010000	0.532338	
mm_171910.1	chr5	52317279	52317479	+	1	NA	NA	NA	-46425	NM_011435	20657	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	0.020000	0.547264	
mm_132236.1	chr16	32750541	32750741	+	1	NA	NA	NA	14755	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.005000	0.457711	
mm_153500.1	chr19	41332935	41333135	-	1	NA	NA	NA	52035	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.010000	0.507463	
mm_86227.1	chr9	120135832	120136032	-	1	NA	NA	NA	5498	NR_002902	104433	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	0.040000	0.582090	
mm_143893.1	chr17	84543154	84543354	-	1	NA	NA	NA	31359	NM_177606	213556	Mm.215159	NM_177606	ENSMUSG00000040852	Plekhh2	AI256725|E030001K05|mKIAA2028	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	protein-coding	0.035000	0.427861	
mm_12944.1	chr2	85136512	85136712	+	1	NA	NA	NA	252	NM_011784	23796	Mm.29368	NM_011784	ENSMUSG00000044338	Aplnr	APJ|Agtrl1|msr/apj	apelin receptor	protein-coding	0.010000	0.532338	
mm_87124.1	chr10	33364349	33364549	+	1	NA	NA	NA	-108092	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.000000	0.298507	-5(GGGCATAAAAGT,-,0.00)
mm_16470.1	chr2	180710196	180710396	+	1	NA	NA	NA	-32	NM_001289651	76425	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	0.155000	0.786070	
mm_80812.1	chr9	96525214	96525414	+	1	NA	NA	NA	-46639	NM_001311135	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.025000	0.547264	
mm_82879.1	chr9	32452030	32452230	-	1	NA	NA	NA	58145	NM_001168354	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.015000	0.507463	
mm_135321.1	chr16	38783508	38783708	-	1	NA	NA	NA	16595	NM_178924	22268	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0.005000	0.417910	-76(CCTTTTATGCCT,+,0.00)
mm_131570.1	chr16	18248793	18248993	+	1	NA	NA	NA	10	NM_001081000	15547	Mm.271798	NM_008307	ENSMUSG00000022721	Trmt2a	Htf9c	TRM2 tRNA methyltransferase 2A	protein-coding	0.160000	0.746269	
mm_103277.1	chr11	72170679	72170879	-	1	NA	NA	NA	32592	NM_028963	74477	Mm.289697	NM_028963	ENSMUSG00000020807	4933427D14Rik	C85113|Kiaa0753|MNR	RIKEN cDNA 4933427D14 gene	protein-coding	0.005000	0.482587	0(ACTTTTATAGCT,+,0.00)
mm_25355.1	chr3	107038836	107039036	+	1	NA	NA	NA	-568	NR_033498	229694	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	0.020000	0.452736	
mm_142592.1	chr17	46752033	46752233	-	1	NA	NA	NA	81	NM_001305989	72029	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	0.100000	0.691542	
mm_40206.1	chr5	37046905	37047105	+	1	NA	NA	NA	-3852	NM_178394	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0.015000	0.552239	
mm_69159.1	chr7	127195774	127195974	-	1	NA	NA	NA	203	NM_001285907	70233	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 antigen (cytoplasmic tail) binding protein 2	protein-coding	0.075000	0.587065	
mm_60611.1	chr7	44590812	44591012	+	1	NA	NA	NA	26	NM_001290682	16504	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.100000	0.731343	
mm_161406.1	chr15	3270792	3270992	+	1	NA	NA	NA	81	NM_001042614	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.040000	0.507463	72(GGCTATAAAAGT,-,0.00)
mm_9637.1	chr1	177050106	177050306	-	1	NA	NA	NA	198561	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.010000	0.383085	
mm_133972.1	chr16	4420290	4420490	-	1	NA	NA	NA	108	NM_001291910	11515	Mm.439750	NM_009624	ENSMUSG00000005580	Adcy9	AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520	adenylate cyclase 9	protein-coding	0.120000	0.766169	
mm_42830.1	chr5	122101070	122101270	+	1	NA	NA	NA	190	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.005000	0.582090	
mm_79406.1	chr9	55149323	55149523	+	1	NA	NA	NA	54	NM_001346657	109161	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0.165000	0.761194	-78(GCCCTTTTAAGC,-,0.00),-76(CCTTTTAAGCCG,+,0.00)
mm_55008.1	chr6	48840362	48840562	-	1	NA	NA	NA	526	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.015000	0.557214	
mm_161974.1	chr19	12267940	12268140	+	1	NA	NA	NA	-192	NM_146686	258681	Mm.271522	NM_146686	ENSMUSG00000060049	Olfr235	MOR214-3|Olfr232|Olfr232-ps1|Olfr235-ps1|Olfr245|Olfr245-ps1	olfactory receptor 235	protein-coding	0.000000	0.323383	
mm_165898.1	chr4	46562863	46563063	-	1	NA	NA	NA	3477	NM_178893	107684	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.060000	0.611940	
mm_81996.1	chr9	121586931	121587131	+	1	NA	NA	NA	11	NR_040740	75384	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	0.020000	0.522388	
mm_140064.1	chr17	74717658	74717858	+	1	NA	NA	NA	8	NM_152817	74196	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0.060000	0.522388	
mm_110367.1	chr12	40124571	40124771	-	1	NA	NA	NA	9557	NM_009132	20259	Mm.2416	NM_009132	ENSMUSG00000002565	Scin	AW545522|adseverin	scinderin	protein-coding	0.020000	0.537313	
mm_161027.1	chr12	4234150	4234350	-	1	NA	NA	NA	44	NM_134046	52504	Mm.70546	NM_134046	ENSMUSG00000020652	Cenpo	2810429O05Rik|8430427C03Rik|D12Ertd482e	centromere protein O	protein-coding	0.085000	0.656716	
mm_24618.1	chr3	93506510	93506710	+	1	NA	NA	NA	-13886	NM_016740	20195	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0.035000	0.512438	
mm_14317.1	chr2	129300339	129300539	+	1	NA	NA	NA	3069	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.005000	0.338308	
mm_93181.1	chr10	93683242	93683442	-	1	NA	NA	NA	-20	NR_038017	100504069	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	OTTMUSG00000027787	predicted gene 15915	ncRNA	0.025000	0.522388	
mm_27223.1	chr3	36053407	36053607	-	1	NA	NA	NA	40	NM_178418	241943	Mm.269018	NM_178418	ENSMUSG00000047696	Ccdc144b	-	coiled-coil domain containing 144B	protein-coding	0.040000	0.527363	
mm_137438.1	chr17	26508564	26508764	+	1	NA	NA	NA	-192	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.100000	0.671642	
mm_125074.1	chr15	25984266	25984466	+	1	NA	NA	NA	0	NM_144523	52521	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.060000	0.572139	
mm_44854.1	chr5	34242378	34242578	-	1	NA	NA	NA	45846	NM_001015039	231125	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.015000	0.542289	
mm_148366.1	chr18	88866694	88866894	-	1	NA	NA	NA	27413	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.000000	0.318408	
mm_13746.1	chr2	118120176	118120376	+	1	NA	NA	NA	8400	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.055000	0.522388	
mm_14954.1	chr2	151999794	151999994	+	1	NA	NA	NA	28	NM_001164820	69698	Mm.258262	NM_027172	ENSMUSG00000027463	Slc52a3	2310046K01Rik|RFT2	solute carrier protein family 52, member 3	protein-coding	0.045000	0.676617	
mm_96658.1	chr11	69395746	69395946	+	1	NA	NA	NA	55	NM_030083	78304	Mm.45683	NM_030083	ENSMUSG00000059278	Naa38	1500034E06Rik|Lsmd1	N(alpha)-acetyltransferase 38, NatC auxiliary subunit	protein-coding	0.080000	0.587065	
mm_137039.1	chr17	17891320	17891520	+	1	NA	NA	NA	3596	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.000000	0.373134	-22(CCTTTTATATAG,+,0.00)
mm_88069.1	chr10	67785649	67785849	+	1	NA	NA	NA	126913	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0.010000	0.447761	
mm_129468.1	chr15	78670424	78670624	-	1	NA	NA	NA	47589	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0.025000	0.606965	
mm_109939.1	chr12	11325813	11326013	-	1	NA	NA	NA	26026	NR_106136	102465775		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.015000	0.447761	
mm_138295.1	chr17	34630421	34630621	+	1	NA	NA	NA	835	NM_030890	260297	Mm.390965	NM_030890	ENSMUSG00000015476	Prrt1	Bat-4|Bat4|D17H6S54E|DSPD1|G5b|NG5|ORF31	proline-rich transmembrane protein 1	protein-coding	0.025000	0.532338	
mm_161693.1	chr17	23599630	23599830	-	1	NA	NA	NA	-243	NM_011747	22654	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	4933429B21|AI835008|Krox-8|Rhit|Zfp-13	zinc finger protein 13	protein-coding	0.025000	0.497512	-52(AGCTTTTAAAAG,-,0.00),-51(GCTTTTAAAAGT,+,0.00),-50(CTTTTAAAAGTC,+,0.00)
mm_35296.1	chr4	22486582	22486782	-	1	NA	NA	NA	1684	NM_008899	18992	Mm.129387	NM_008899	ENSMUSG00000095139	Pou3f2	9430075J19Rik|A230098E07Rik|Brn-2|Brn2|OTF-7|Otf7|oct-7	POU domain, class 3, transcription factor 2	protein-coding	0.005000	0.402985	17(CCTTAAAAAAGG,+,0.00)
mm_171960.1	chr5	82906764	82906964	+	1	NA	NA	NA	-107799	NR_035415	100316803		NR_035415	ENSMUSG00000080586	Mir1187	Mirn1187|mir-1187|mmu-mir-1187	microRNA 1187	ncRNA	0.040000	0.502488	-30(CCTTTAATGTCC,+,0.00)
mm_129695.1	chr15	81585965	81586165	-	1	NA	NA	NA	-149	NM_177821	328572	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.105000	0.746269	
mm_35701.1	chr4	44167494	44167694	-	1	NA	NA	NA	-56	NM_175201	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.155000	0.786070	
mm_64175.1	chr7	141457510	141457710	+	1	NA	NA	NA	2422	NM_001163689	66853	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0.025000	0.547264	
mm_67017.1	chr7	65635868	65636068	-	1	NA	NA	NA	-8930	NM_172310	272396	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0.015000	0.557214	
mm_135184.1	chr16	36071463	36071663	-	1	NA	NA	NA	-48	NM_027342	70186	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	0.160000	0.786070	
mm_81822.1	chr9	118049617	118049817	+	1	NA	NA	NA	9195	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.005000	0.338308	67(TGCTTTTAAAAG,-,0.00),68(GCTTTTAAAAGT,+,0.00)
mm_21733.1	chr2	164745805	164746005	-	1	NA	NA	NA	-110	NM_133763	76233	Mm.440009	NM_133763	ENSMUSG00000017299	Dnttip1	6430706C13Rik	deoxynucleotidyltransferase, terminal, interacting protein 1	protein-coding	0.125000	0.691542	
mm_111854.1	chr12	107939115	107939315	-	1	NA	NA	NA	64199	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.000000	0.348259	
mm_62040.1	chr7	92234886	92235086	+	1	NA	NA	NA	16	NM_001243047	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.010000	0.442786	
mm_41071.1	chr5	87668228	87668428	+	1	NA	NA	NA	2120	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.308458	
mm_19775.1	chr2	106003129	106003329	-	1	NA	NA	NA	320	NM_026992	99349	Mm.25661	NM_026992	ENSMUSG00000027166	Dnajc24	1700030A21Rik|2610027M02Rik|AV066965|AW240712|Dph4|MmDjC7|Zcsl3	DnaJ heat shock protein family (Hsp40) member C24	protein-coding	0.075000	0.616915	
mm_147407.1	chr18	44662158	44662358	-	1	NA	NA	NA	8	NM_001085374	328949	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0.060000	0.601990	
mm_4104.1	chr1	167598239	167598439	+	1	NA	NA	NA	-23	NM_009107	20183	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0.075000	0.616915	
mm_102878.1	chr11	69410274	69410474	-	1	NA	NA	NA	3301	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.040000	0.547264	
mm_100389.1	chr11	119375819	119376019	+	1	NA	NA	NA	-14553	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.005000	0.527363	
mm_108964.1	chr12	102400092	102400292	+	1	NA	NA	NA	39621	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.025000	0.527363	
mm_61825.1	chr7	87843935	87844135	+	1	NA	NA	NA	259867	NM_001143834	108071	Mm.235018	NM_001033224	ENSMUSG00000049583	Grm5	6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b	glutamate receptor, metabotropic 5	protein-coding	0.000000	0.293532	80(CCTCTTATAGAA,+,0.00)
mm_145434.1	chr18	58836262	58836462	+	1	NA	NA	NA	-1	NM_175506	240322	Mm.71963	NM_175506	ENSMUSG00000053441	Adamts19	4831407I23Rik|AU015154|D230034E10Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	protein-coding	0.110000	0.711443	
mm_79996.1	chr9	67041037	67041237	+	1	NA	NA	NA	2734	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.000000	0.482587	-100(GCCCTTATATGG,-,0.00),-98(CCTTATATGGTC,+,0.00)
mm_70924.1	chr8	25809768	25809968	+	1	NA	NA	NA	1394	NM_011485	20845	Mm.293314	NM_011485	ENSMUSG00000031574	Star	AV363654|D8Ertd419e|stARD1	steroidogenic acute regulatory protein	protein-coding	0.005000	0.497512	
mm_98109.1	chr11	87015887	87016087	+	1	NA	NA	NA	-22225	NM_001005341	77864	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee-like 2 (Drosophila)	protein-coding	0.015000	0.422886	-34(GCCTCTATATAG,-,0.00),-32(CTCTATATAGGC,+,0.00),-32(CTCTATATAGGC,-,0.00)
mm_131954.1	chr16	24457703	24457903	+	1	NA	NA	NA	9712	NM_001145952	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.020000	0.388060	
mm_133088.1	chr16	62854185	62854385	+	1	NA	NA	NA	-22	NM_011173	19128	Mm.127156	NM_011173	ENSMUSG00000022912	Pros1	AW214361	protein S (alpha)	protein-coding	0.100000	0.771144	
mm_94952.1	chr11	29808814	29809014	+	1	NA	NA	NA	16754	NM_176829	216622	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0.015000	0.467662	-81(GCCTATTTATAG,-,0.00),-79(CTATTTATAGAG,+,0.00)
mm_93268.1	chr10	95767667	95767867	-	1	NA	NA	NA	-172896	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.005000	0.442786	
mm_163454.1	chr12	91357235	91357435	-	1	NA	NA	NA	27074	NM_181815	75216	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0.010000	0.283582	
mm_72721.1	chr8	85036832	85037032	+	1	NA	NA	NA	17	NM_145390	212999	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	0.085000	0.582090	
mm_17637.1	chr2	31141910	31142110	-	1	NA	NA	NA	-2	NM_001038700	14269	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.135000	0.726368	
mm_60300.1	chr7	44020707	44020907	+	1	NA	NA	NA	8110	NM_010115	13647	Mm.439663	NM_010115		Egfbp2	Egfbp-2|Klk1b26|mGk-13	epidermal growth factor binding protein type B	protein-coding	0.000000	0.532338	-33(GTTTTTAAAGTC,+,0.00)
mm_128315.1	chr15	37960983	37961183	-	1	NA	NA	NA	-28	NM_199476	382985	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.090000	0.696517	
mm_127456.1	chr15	101271674	101271874	+	1	NA	NA	NA	4928	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.035000	0.616915	
mm_40502.1	chr5	57727193	57727393	+	1	NA	NA	NA	9212	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.005000	0.358209	
mm_119239.1	chr14	33471436	33471636	+	1	NA	NA	NA	-24378	NM_016700	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.010000	0.532338	
mm_56372.1	chr6	94028738	94028938	-	1	NA	NA	NA	-115148	NM_001083320	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.005000	0.318408	
mm_49640.1	chr6	30805107	30805307	+	1	NA	NA	NA	63908	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.487562	
mm_23128.1	chr3	37668725	37668925	+	1	NA	NA	NA	28878	NM_001305442	24063	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty homolog 1 (Drosophila)	protein-coding	0.025000	0.557214	-34(GGTTATTAAAGG,-,0.00)
mm_129009.1	chr15	74909462	74909662	-	1	NA	NA	NA	-27858	NM_025929	67038	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.005000	0.557214	
mm_15307.1	chr2	155388996	155389196	+	1	NA	NA	NA	7240	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.000000	0.422886	
mm_104092.1	chr11	86671078	86671278	-	1	NA	NA	NA	12644	NM_029478	75909	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0.005000	0.472637	
mm_11666.1	chr2	35282209	35282409	+	1	NA	NA	NA	-71	NM_146120	227753	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.065000	0.636816	
mm_77780.1	chr9	3022083	3022283	+	1	NA	NA	NA	16560	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.348259	
mm_58705.1	chr7	12961916	12962116	+	1	NA	NA	NA	-3848	NM_178732	243834	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	0.030000	0.422886	
mm_119087.1	chr14	30890557	30890757	+	1	NA	NA	NA	4181	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.040000	0.507463	
mm_61526.1	chr7	78914431	78914631	+	1	NA	NA	NA	296	NM_001113527	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.040000	0.557214	
mm_117238.1	chr13	64312496	64312696	-	1	NA	NA	NA	114	NM_025370	66129	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	0.155000	0.746269	
mm_6223.1	chr1	66928704	66928904	-	1	NA	NA	NA	6562	NM_001113387	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.005000	0.338308	
mm_114045.1	chr13	54106712	54106912	+	1	NA	NA	NA	34967	NM_027324	14057	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	0.010000	0.383085	
mm_160990.1	chr11	106084861	106085061	+	1	NA	NA	NA	59	NM_011947	26406	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.105000	0.741294	
mm_66217.1	chr7	34389590	34389790	-	1	NA	NA	NA	-150	NM_025948	67070	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral	LSM14A mRNA processing body assembly factor	protein-coding	0.165000	0.776119	
mm_119385.1	chr14	41136499	41136699	+	1	NA	NA	NA	4811	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.000000	0.323383	
mm_161224.1	chr13	69533680	69533880	-	1	NA	NA	NA	84	NM_198600	210106	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.170000	0.726368	
mm_165788.1	chr3	131489918	131490118	+	1	NA	NA	NA	-74750	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.115000	0.751244	
mm_144437.1	chr18	21651298	21651498	+	1	NA	NA	NA	-167	NM_001271580	74644	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding	0.020000	0.656716	
mm_98826.1	chr11	97372964	97373164	+	1	NA	NA	NA	10513	NM_138657	192157	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.010000	0.462687	
mm_97850.1	chr11	83069238	83069438	+	1	NA	NA	NA	4226	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.005000	0.427861	
mm_53779.1	chr6	146501614	146501814	+	1	NA	NA	NA	509	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.080000	0.641791	
mm_49290.1	chr6	17666579	17666779	+	1	NA	NA	NA	-27315	NM_001289624	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.010000	0.303483	-6(TTTTTTAAACAC,+,0.00)
mm_42311.1	chr5	114853615	114853815	+	1	NA	NA	NA	1	NM_026263	67593	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	0.015000	0.527363	
mm_4247.1	chr1	171403122	171403322	+	1	NA	NA	NA	-8091	NM_001305678	22278	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	0.030000	0.532338	
mm_9868.1	chr1	184882911	184883111	-	1	NA	NA	NA	25	NM_178692	226777	Mm.169542	NM_178692	ENSMUSG00000039349	C130074G19Rik	-	RIKEN cDNA C130074G19 gene	protein-coding	0.115000	0.731343	
mm_30890.1	chr4	32258568	32258768	+	1	NA	NA	NA	-158767	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.010000	0.368159	
mm_28887.1	chr3	97868126	97868326	-	1	NA	NA	NA	20481	NM_001289702	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.105000	0.711443	
mm_83431.1	chr9	44987093	44987293	-	1	NA	NA	NA	5407	NM_013487	12500	Mm.4527	NM_013487	ENSMUSG00000032094	Cd3d	T3d	CD3 antigen, delta polypeptide	protein-coding	0.015000	0.472637	
mm_70326.1	chr8	4349504	4349704	+	1	NA	NA	NA	16	NM_009138	20300	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0.005000	0.537313	
mm_63535.1	chr7	127973527	127973727	+	1	NA	NA	NA	6148	NM_139149	233908	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0.005000	0.343284	62(AACTTTAAAAAG,-,0.00)
mm_43079.1	chr5	124446914	124447114	+	1	NA	NA	NA	310	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.010000	0.527363	-91(TTCCTTAAATGG,-,0.00),-89(CCTTAAATGGAC,+,0.00),-70(TCCTTTAAGGTC,+,0.00)
mm_134420.1	chr16	17872544	17872744	-	1	NA	NA	NA	19084	NM_010048	13356	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	0.025000	0.547264	
mm_161496.1	chr15	88751616	88751816	+	1	NA	NA	NA	5	NM_181412	223773	Mm.396622	NM_181412	ENSMUSG00000034333	Zbed4	1700009F06Rik	zinc finger, BED type containing 4	protein-coding	0.190000	0.835821	
mm_7779.1	chr1	131276783	131276983	-	1	NA	NA	NA	2680	NM_019777	56489	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.000000	0.562189	
mm_104406.1	chr11	94549094	94549294	-	1	NA	NA	NA	13	NM_001013381	237926	Mm.342275	NM_001013381	ENSMUSG00000039096	Rsad1	B430319G23|BC056485	radical S-adenosyl methionine domain containing 1	protein-coding	0.095000	0.696517	
mm_96012.1	chr11	59542662	59542862	+	1	NA	NA	NA	76	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.020000	0.452736	
mm_39915.1	chr5	31452586	31452786	+	1	NA	NA	NA	250	NM_172993	269639	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	0.030000	0.393035	23(CCTTTTATATCA,+,0.00)
mm_156047.1	chrX	108893073	108893273	+	1	NA	NA	NA	58695	NR_015493	69964	Mm.160066	NR_015493	ENSMUSG00000086629	2810403D21Rik	1810022M18Rik|4632410B05Rik|AU017716	RIKEN cDNA 2810403D21 gene	ncRNA	0.015000	0.447761	
mm_107917.1	chr12	71036871	71037071	+	1	NA	NA	NA	21004	NM_001081195	238247	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|MmRBBP1|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.010000	0.467662	
mm_63106.1	chr7	122632205	122632405	+	1	NA	NA	NA	-39439	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.010000	0.487562	
mm_151448.1	chr19	57646164	57646364	+	1	NA	NA	NA	35230	NM_181415	226255	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0.010000	0.318408	
mm_113100.1	chr13	24376040	24376240	+	1	NA	NA	NA	-38982	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.010000	0.452736	
mm_87908.1	chr10	62252999	62253199	+	1	NA	NA	NA	661	NM_009314	21337	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0.035000	0.517413	
mm_27078.1	chr3	28897064	28897264	-	1	NA	NA	NA	4547	NM_001033479	385263	Mm.60893	NM_001033479	ENSMUSG00000074655	Gm1527	Gm1136	predicted gene 1527	protein-coding	0.020000	0.621891	
mm_164813.1	chr18	32985208	32985408	+	1	NA	NA	NA	46267	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.020000	0.512438	-33(GCATTTAGGCCC,+,0.00)
mm_29918.1	chr3	131489852	131490052	-	1	NA	NA	NA	-74816	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.075000	0.651741	
mm_135186.1	chr16	36072133	36072333	-	1	NA	NA	NA	573	NM_001159421	381045	Mm.310434	NM_198645	ENSMUSG00000075229	Ccdc58	A930007B11Rik|AI413631	coiled-coil domain containing 58	protein-coding	0.030000	0.562189	-34(CCCTATAAAAAG,-,0.00)
mm_12786.1	chr2	79587661	79587861	+	1	NA	NA	NA	-47664	NM_080558	70599	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0.030000	0.502488	
mm_16155.1	chr2	172370601	172370801	+	1	NA	NA	NA	-131	NM_011497	20878	Mm.249363	NM_011497	ENSMUSG00000027496	Aurka	AIRK1|ARK-1|AU019385|AW539821|Ark1|Aurora-A|Ayk1|IAK|IAK1|Stk6	aurora kinase A	protein-coding	0.100000	0.631841	
mm_41788.1	chr5	103737256	103737456	+	1	NA	NA	NA	-16806	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.035000	0.517413	
mm_103051.1	chr11	69815233	69815433	-	1	NA	NA	NA	3107	NM_175368	108803	Mm.73263	NM_175368	ENSMUSG00000044084	4933402P03Rik	-	RIKEN cDNA 4933402P03 gene	protein-coding	0.025000	0.577114	
mm_148445.1	chr19	3972234	3972434	+	1	NA	NA	NA	6	NM_001177438	621603	Mm.34137	NM_001177438	ENSMUSG00000075296	Aldh3b2	AI848594|C130048D07Rik	aldehyde dehydrogenase 3 family, member B2	protein-coding	0.030000	0.537313	
mm_27268.1	chr3	39359058	39359258	-	1	NA	NA	NA	472218	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.050000	0.532338	
mm_59663.1	chr7	28316304	28316504	+	1	NA	NA	NA	-4358	NM_025616	66525	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	0.030000	0.542289	
mm_144670.1	chr18	34542228	34542428	+	1	NA	NA	NA	0	NM_009290	20890	Mm.558	NM_009290	ENSMUSG00000012282	Wnt8a	Stra11|Wnt-8A|Wnt-8D|Wnt8d	wingless-type MMTV integration site family, member 8A	protein-coding	0.020000	0.572139	
mm_132520.1	chr16	37616696	37616896	+	1	NA	NA	NA	36643	NM_013547	15233	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	0.025000	0.487562	
mm_33087.1	chr4	124659455	124659655	+	1	NA	NA	NA	1909	NM_011141	18991	Mm.297371	NM_011141	ENSMUSG00000090125	Pou3f1	Oct-6|Oct6|Otf-6|Otf6|Scip|Test1|Tst-1|Tst1	POU domain, class 3, transcription factor 1	protein-coding	0.070000	0.592040	
mm_90123.1	chr10	117285193	117285393	+	1	NA	NA	NA	-3021	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.010000	0.487562	-81(GGCTCTTTAGGC,-,0.00)
mm_139059.1	chr17	46428823	46429023	+	1	NA	NA	NA	-19	NM_053250	114570	Mm.25168	NM_053250	ENSMUSG00000023968	Crip3	TLP|TLP-A|TLP-B|Tlmp	cysteine-rich protein 3	protein-coding	0.030000	0.547264	
mm_8289.1	chr1	143093605	143093805	-	1	NA	NA	NA	-546992	NM_020025	26878	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.025000	0.452736	
mm_14001.1	chr2	121987880	121988080	+	1	NA	NA	NA	-31888	NM_008545	17147	Mm.389349	NM_008545	ENSMUSG00000074881	Mageb3	Mage-b3|Mage-ps1|Mage-rs3|Smage3	melanoma antigen, family B, 3	protein-coding	0.000000	0.402985	
mm_83718.1	chr9	50756530	50756730	-	1	NA	NA	NA	3659	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.005000	0.373134	
mm_79226.1	chr9	49954807	49955007	+	1	NA	NA	NA	-155514	NM_001311065	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding	0.005000	0.517413	
mm_151286.1	chr19	55285881	55286081	+	1	NA	NA	NA	30051	NM_025883	66980	Mm.386789	NM_025883	ENSMUSG00000024982	Zdhhc6	2400007G07Rik|5930409M18Rik|AI462345|C77369	zinc finger, DHHC domain containing 6	protein-coding	0.015000	0.482587	
mm_82727.1	chr9	25151550	25151750	-	1	NA	NA	NA	131	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.130000	0.776119	
mm_130761.1	chr15	101351179	101351379	-	1	NA	NA	NA	-18073	NR_035462	100316694		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0.000000	0.527363	
mm_173086.1	chrX	147239695	147239895	-	1	NA	NA	NA	81585	NR_029956	723914		NR_029956	ENSMUSG00000065450	Mir448	Mirn448|mir-448|mmu-mir-448	microRNA 448	ncRNA	0.000000	0.388060	-95(GCTTATATAACA,+,0.00)
mm_170687.1	chr2	130397499	130397699	-	1	NA	NA	NA	30	NM_019696	56264	Mm.112701	NM_019696	ENSMUSG00000027408	Cpxm1	AA986902|Cpx-1|Cpx1|Cpxm	carboxypeptidase X 1 (M14 family)	protein-coding	0.090000	0.716418	
mm_110570.1	chr12	56345680	56345880	-	1	NA	NA	NA	114	NM_145442	217588	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0.070000	0.636816	
mm_76162.1	chr8	82372797	82372997	-	1	NA	NA	NA	29689	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.005000	0.393035	
mm_155655.1	chrX	85870609	85870809	+	1	NA	NA	NA	436	NM_001163539	71398	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	0.005000	0.338308	
mm_33030.1	chr4	122689173	122689373	+	1	NA	NA	NA	14	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	0.000000	0.388060	
mm_132627.1	chr16	38902245	38902445	+	1	NA	NA	NA	0	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.135000	0.791045	
mm_86400.1	chr9	123968607	123968807	-	1	NA	NA	NA	-15	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.005000	0.472637	
mm_144407.1	chr18	20961183	20961383	+	1	NA	NA	NA	16658	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.040000	0.477612	
mm_19314.1	chr2	90548982	90549182	-	1	NA	NA	NA	31565	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.005000	0.562189	
mm_60491.1	chr7	44478544	44478744	+	1	NA	NA	NA	-5873	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.497512	
mm_139950.1	chr17	71204600	71204800	+	1	NA	NA	NA	46	NM_001164885	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.005000	0.383085	-70(TTTTTTAAAGAC,+,0.00)
mm_119489.1	chr14	47376198	47376398	+	1	NA	NA	NA	2438	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.005000	0.512438	
mm_108628.1	chr12	85608231	85608431	+	1	NA	NA	NA	8313	NM_001205053	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.035000	0.557214	
mm_77450.1	chr8	121806173	121806373	-	1	NA	NA	NA	23296	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.030000	0.507463	
mm_86362.1	chr9	123781400	123781600	-	1	NA	NA	NA	14289	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.000000	0.368159	
mm_103571.1	chr11	77893756	77893956	-	1	NA	NA	NA	16	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding	0.005000	0.567164	
mm_43722.1	chr5	139484601	139484801	+	1	NA	NA	NA	-210	NM_001159908	100494	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.050000	0.567164	
mm_53134.1	chr6	125192062	125192262	+	1	NA	NA	NA	-38	NM_025595	66493	Mm.138749	NM_025595	ENSMUSG00000030335	Mrpl51	2610511M02Rik|CDA09|HSPC241|Mrp64	mitochondrial ribosomal protein L51	protein-coding	0.055000	0.592040	
mm_138313.1	chr17	34660387	34660587	+	1	NA	NA	NA	-10048	NM_031176	81877	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	0.015000	0.641791	
mm_11189.1	chr2	29122508	29122708	+	1	NA	NA	NA	-2384	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.005000	0.532338	
mm_109917.1	chr12	8482085	8482285	-	1	NA	NA	NA	17800	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.020000	0.552239	
mm_79576.1	chr9	58134785	58134985	+	1	NA	NA	NA	220	NM_001162479	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.015000	0.537313	
mm_72170.1	chr8	72268512	72268712	+	1	NA	NA	NA	28594	NM_007456	11767	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	0.050000	0.567164	-34(CGCTATTTAAGC,-,0.00)
mm_169698.1	chr15	75086348	75086548	+	1	NA	NA	NA	25501	NM_001099217	100041546	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0.005000	0.487562	
mm_80736.1	chr9	94669851	94670051	+	1	NA	NA	NA	59	NM_177909	331004	Mm.326125	NM_177909	ENSMUSG00000031129	Slc9a9	5730527A11Rik|9930105B05|AI854429|Nhe9	solute carrier family 9 (sodium/hydrogen exchanger), member 9	protein-coding	0.035000	0.487562	-88(GCTTTAAGAGAG,+,0.00)
mm_8236.1	chr1	138175804	138176004	-	1	NA	NA	NA	-599	NM_001268286	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.457711	83(GGCTCTTTAAAG,-,0.00),84(GCTCTTTAAAGC,-,0.00),85(CTCTTTAAAGCC,+,0.00)
mm_34048.1	chr4	138225950	138226150	+	1	NA	NA	NA	8923	NM_001122897	15441	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	0.020000	0.492537	-11(GGCCATTAAGGC,-,0.00),65(GCTTATATGGTC,+,0.00)
mm_46648.1	chr5	108594320	108594520	-	1	NA	NA	NA	35357	NM_153569	231580	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	0.010000	0.417910	
mm_35877.1	chr4	49536765	49536965	-	1	NA	NA	NA	12681	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.020000	0.507463	
mm_142432.1	chr17	45570370	45570570	-	1	NA	NA	NA	2791	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.015000	0.447761	
mm_67136.1	chr7	72306648	72306848	-	1	NA	NA	NA	-153	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.080000	0.631841	75(TCCCCTTTAAGG,-,0.00),76(CCCCTTTAAGGC,-,0.00),77(CCCTTTAAGGCG,+,0.00),78(CCTTTAAGGCGG,+,0.00)
mm_80152.1	chr9	70928675	70928875	+	1	NA	NA	NA	6033	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.005000	0.388060	
mm_41007.1	chr5	81019981	81020181	+	1	NA	NA	NA	-490	NM_001347367	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.095000	0.641791	
mm_98029.1	chr11	85311100	85311300	+	1	NA	NA	NA	-54	NM_016910	53892	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	0.095000	0.656716	
mm_161341.1	chr14	51988667	51988867	+	1	NA	NA	NA	62	NR_045728	100502764	Mm.437219	NR_045728	ENSMUSG00000097633	Gm16617	-	predicted gene, 16617	ncRNA	0.020000	0.592040	
mm_165665.1	chr3	88502934	88503134	-	1	NA	NA	NA	318	NM_001111102	16905	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.095000	0.691542	
mm_55278.1	chr6	54278976	54279176	-	1	NA	NA	NA	6254	NM_023543	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.010000	0.477612	
mm_3333.1	chr1	137945907	137946107	+	1	NA	NA	NA	-20448	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.020000	0.502488	32(CATTATTAAAGG,-,0.00)
mm_60832.1	chr7	45715424	45715624	+	1	NA	NA	NA	-317	NM_020011	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.015000	0.467662	
mm_138478.1	chr17	35194930	35195130	+	1	NA	NA	NA	58	NR_105939	102465588		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	0.015000	0.577114	
mm_73534.1	chr8	108703505	108703705	+	1	NA	NA	NA	-11039	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.015000	0.462687	
mm_132576.1	chr16	38244299	38244499	+	1	NA	NA	NA	50425	NM_010936	18171	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0.020000	0.402985	70(GGTCCTAAAAGG,-,0.00)
mm_77219.1	chr8	115693701	115693901	-	1	NA	NA	NA	13093	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.005000	0.308458	
mm_6472.1	chr1	74068598	74068798	-	1	NA	NA	NA	55749	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.040000	0.601990	
mm_142322.1	chr17	43456920	43457120	-	1	NA	NA	NA	45753	NM_008585	17287	Mm.5346	NM_008585	ENSMUSG00000023914	Mep1a	AI098089|AW107200|Mep-1|Mep-1a|Mep1	meprin 1 alpha	protein-coding	0.015000	0.517413	
mm_161273.1	chr14	8258934	8259134	-	1	NA	NA	NA	-15	NM_053115	93732	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0.010000	0.542289	
mm_109214.1	chr12	108684553	108684753	+	1	NA	NA	NA	17653	NM_001171002	70059	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	0.000000	0.353234	
mm_29045.1	chr3	103028806	103029006	-	1	NA	NA	NA	8360	NM_144901	229663	Mm.277713	NM_144901	ENSMUSG00000068823	Csde1	AA960392|BC016898|D3Jfr1|mKIAA0885|unr	cold shock domain containing E1, RNA binding	protein-coding	0.010000	0.437811	
mm_31963.1	chr4	86930620	86930820	+	1	NA	NA	NA	56306	NM_139306	230379	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0.035000	0.542289	
mm_138076.1	chr17	33955714	33955914	+	1	NA	NA	NA	-68	NM_172620	224705	Mm.448614	NM_172620	ENSMUSG00000024319	Vps52	ARE1|D130068D18|D430041K17Rik|SAC2|Sacm2l|tclw5	VPS52 GARP complex subunit	protein-coding	0.075000	0.557214	
mm_50801.1	chr6	54269069	54269269	+	1	NA	NA	NA	13	NM_001311134	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.005000	0.442786	
mm_58585.1	chr7	4943747	4943947	+	1	NA	NA	NA	18003	NM_173008	269855	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	0.005000	0.537313	
mm_99053.1	chr11	99051439	99051639	+	1	NA	NA	NA	10279	NM_010517	16010	Mm.233799	NM_010517	ENSMUSG00000017493	Igfbp4	AI875747|Deb2|IGFBP-4	insulin-like growth factor binding protein 4	protein-coding	0.020000	0.631841	
mm_153934.1	chr19	47450528	47450728	-	1	NA	NA	NA	13783	NM_001164717	14218	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.010000	0.547264	
mm_132964.1	chr16	50552014	50552214	+	1	NA	NA	NA	23612	NR_040379	619312	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.015000	0.507463	
mm_115656.1	chr13	12457356	12457556	-	1	NA	NA	NA	1860	NM_001291055	56048	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.015000	0.343284	
mm_79242.1	chr9	50506297	50506497	+	1	NA	NA	NA	-1592	NR_040714	69631	Mm.414996	NR_040714	ENSMUSG00000101304	Plet1os	2310014F07Rik	placenta expressed transcript 1, opposite strand	ncRNA	0.005000	0.388060	
mm_31526.1	chr4	55008799	55008999	+	1	NA	NA	NA	60954	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.045000	0.532338	
mm_35652.1	chr4	43533264	43533464	-	1	NA	NA	NA	-9810	NM_001277875	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.025000	0.547264	
mm_51320.1	chr6	72314784	72314984	+	1	NA	NA	NA	10274	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.000000	0.472637	
mm_92806.1	chr10	81378327	81378527	-	1	NA	NA	NA	-57	NM_019757	56371	Mm.24202	NM_019757	ENSMUSG00000020235	Fzr1	AW108046|Cdh1|FZR|FZR2|Fyr|HCDH|HCDH1	fizzy/cell division cycle 20 related 1 (Drosophila)	protein-coding	0.150000	0.756219	
mm_165826.1	chr3	151294439	151294639	+	1	NA	NA	NA	-143343	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.010000	0.442786	31(CCTTTTAAAGTA,+,0.00)
mm_111843.1	chr12	107938582	107938782	-	1	NA	NA	NA	64732	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.000000	0.407960	
mm_6408.1	chr1	72874077	72874277	-	1	NA	NA	NA	688	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.040000	0.552239	-55(AGATTTAAAAGG,-,0.00)
mm_38310.1	chr4	136956728	136956928	-	1	NA	NA	NA	-12	NM_007939	13842	Mm.1390	NM_007939	ENSMUSG00000028661	Epha8	AW047546|Eek|Hek3|mKIAA1459	Eph receptor A8	protein-coding	0.205000	0.880597	
mm_154391.1	chrM	12896	13096	+	1	NA	NA	NA	NA	NA									0.035000	0.398010	
mm_32090.1	chr4	98437214	98437414	+	1	NA	NA	NA	41488	NM_172696	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.030000	0.492537	
mm_118452.1	chr14	8367316	8367516	+	1	NA	NA	NA	11347	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.005000	0.537313	
mm_82560.1	chr9	21033230	21033430	-	1	NA	NA	NA	-1002	NR_035438	100316681		NR_035438	ENSMUSG00000084663	Mir1900	Mirn1900|mmu-mir-1900	microRNA 1900	ncRNA	0.080000	0.661692	
mm_12124.1	chr2	61630709	61630909	+	1	NA	NA	NA	37712	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.005000	0.373134	
mm_27298.1	chr3	46447860	46448060	-	1	NA	NA	NA	-19	NM_001101479	241989	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding	0.050000	0.656716	
mm_140346.1	chr17	86830875	86831075	+	1	NA	NA	NA	77111	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.040000	0.592040	
mm_171874.1	chr5	29735919	29736119	+	1	NA	NA	NA	-83	NR_028426	332993	Mm.473746	NR_028426		Gm5129	EG332993|ENSMUSG00000053121	predicted gene 5129	ncRNA	0.140000	0.696517	
mm_5975.1	chr1	57969915	57970115	-	1	NA	NA	NA	69	NM_001159864	51960	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding	0.125000	0.741294	
mm_60650.1	chr7	44857232	44857432	+	1	NA	NA	NA	-71	NM_001290767	59047	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0.070000	0.611940	
mm_144736.1	chr18	35562192	35562392	+	1	NA	NA	NA	134	NM_010771	17184	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0.085000	0.686567	
mm_70970.1	chr8	27085450	27085650	+	1	NA	NA	NA	-291	NM_054044	78560	Mm.87046	NM_054044	ENSMUSG00000031486	Adgra2	8430414O08Rik|9530074E10Rik|Gpr124|Tem5|mKIAA1531	adhesion G protein-coupled receptor A2	protein-coding	0.130000	0.756219	
mm_149666.1	chr19	18749657	18749857	+	1	NA	NA	NA	-226	NM_153417	225997	Mm.215171	NM_153417	ENSMUSG00000024727	Trpm6	CHAK2|TRPM6/CHAK2	transient receptor potential cation channel, subfamily M, member 6	protein-coding	0.065000	0.572139	
mm_66937.1	chr7	61615194	61615394	-	1	NA	NA	NA	33	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.000000	0.398010	
mm_53459.1	chr6	134830669	134830869	+	1	NA	NA	NA	570	NM_177687	232430	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	0.040000	0.457711	
mm_148407.1	chr19	3895953	3896153	+	1	NA	NA	NA	9177	NM_016921	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.005000	0.522388	
mm_55919.1	chr6	83831613	83831813	-	1	NA	NA	NA	28	NM_146169	232164	Mm.404420	NM_146169	ENSMUSG00000045896	Paip2b	-	poly(A) binding protein interacting protein 2B	protein-coding	0.135000	0.706468	
mm_84477.1	chr9	66834528	66834728	-	1	NA	NA	NA	78	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.085000	0.636816	
mm_83136.1	chr9	40437151	40437351	-	1	NA	NA	NA	18513	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.015000	0.427861	
mm_41837.1	chr5	104309283	104309483	+	1	NA	NA	NA	10096	NM_008318	15891	Mm.4987	NM_008318	ENSMUSG00000029306	Ibsp	BSP|BSP II|BSPII|Bsp2	integrin binding sialoprotein	protein-coding	0.035000	0.517413	
mm_166312.1	chr5	108694108	108694308	+	1	NA	NA	NA	-21	NM_001164259	116701	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0.125000	0.741294	
mm_54097.1	chr6	16837123	16837323	-	1	NA	NA	NA	61218	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.005000	0.393035	
mm_124487.1	chr14	121738448	121738648	-	1	NA	NA	NA	381	NM_001128308	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.035000	0.532338	
mm_134682.1	chr16	22411822	22412022	-	1	NA	NA	NA	27648	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.015000	0.527363	
mm_91394.1	chr10	30763459	30763659	-	1	NA	NA	NA	39548	NM_172495	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.010000	0.452736	
mm_4443.1	chr1	172521028	172521228	+	1	NA	NA	NA	-2	NM_027972	71870	Mm.78373	NM_027972	ENSMUSG00000026546	Cfap45	1700028D05Rik|Ccdc19|Nesg1	cilia and flagella associated protein 45	protein-coding	0.065000	0.592040	
mm_60088.1	chr7	34659864	34660064	+	1	NA	NA	NA	-7123	NM_146188	233107	Mm.486198	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	0.005000	0.507463	
mm_107921.1	chr12	71063106	71063306	+	1	NA	NA	NA	47239	NM_001081195	238247	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|MmRBBP1|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.035000	0.442786	4(AGCTCTAAAAGA,-,0.00)
mm_19164.1	chr2	83941125	83941325	-	1	NA	NA	NA	1	NM_027964	71861	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.065000	0.577114	
mm_76538.1	chr8	87960531	87960731	-	1	NA	NA	NA	-1036	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	0.080000	0.651741	
mm_64539.1	chr7	144238598	144238798	+	1	NA	NA	NA	-45687	NM_001081370	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.035000	0.457711	
mm_133468.1	chr16	89215831	89216031	+	1	NA	NA	NA	10070	NM_001163615	622935	Mm.459837	NM_001163615	ENSMUSG00000091039	Krtap20-2	1190004K03Rik|EG622935|Gm6371	keratin associated protein 20-2	protein-coding	0.010000	0.482587	-33(GTGTATAAAAGG,-,0.00)
mm_73825.1	chr8	117459291	117459491	+	1	NA	NA	NA	126	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.020000	0.407960	
mm_56753.1	chr6	115994882	115995082	-	1	NA	NA	NA	23	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.135000	0.825871	
mm_51228.1	chr6	71373439	71373639	+	1	NA	NA	NA	112	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.040000	0.621891	
mm_161214.1	chr13	65205737	65205937	-	1	NA	NA	NA	-121	NM_175290	97895	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	0.010000	0.388060	
mm_165778.1	chr3	129753633	129753833	+	1	NA	NA	NA	-25	NR_040589	319224	Mm.477035	NR_040589	ENSMUSG00000105960	6330410L21Rik	-	RIKEN cDNA 6330410L21 gene	ncRNA	0.020000	0.487562	
mm_37032.1	chr4	115133974	115134174	-	1	NA	NA	NA	-97	NM_001003947	81906	Mm.215544	NM_001003947	ENSMUSG00000047155	Cyp4x1	A230025G20|CYPIVX1|CYP_a|Cyp4a28-ps	cytochrome P450, family 4, subfamily x, polypeptide 1	protein-coding	0.030000	0.621891	
mm_104045.1	chr11	86356031	86356231	-	1	NA	NA	NA	1394	NM_001080931	327987	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0.010000	0.358209	
mm_172754.1	chr8	85299372	85299572	-	1	NA	NA	NA	25	NM_022997	65114	Mm.296520	NM_022997	ENSMUSG00000031696	Vps35	AI647796|Mem3	VPS35 retromer complex component	protein-coding	0.100000	0.696517	
mm_118744.1	chr14	22318640	22318840	+	1	NA	NA	NA	224058	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.015000	0.432836	
mm_50294.1	chr6	47454904	47455104	+	1	NA	NA	NA	680	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.120000	0.691542	
mm_14404.1	chr2	130123212	130123412	+	1	NA	NA	NA	37	NM_177726	241636	Mm.83437	NM_177726	ENSMUSG00000027403	Tgm6	TGM3L|TGY	transglutaminase 6	protein-coding	0.025000	0.597015	
mm_59207.1	chr7	24512548	24512748	+	1	NA	NA	NA	5561	NR_110958	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.010000	0.547264	
mm_85557.1	chr9	106886977	106887177	-	1	NA	NA	NA	-77	NM_175402	109095	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	0.195000	0.830846	
mm_68809.1	chr7	125492467	125492667	-	1	NA	NA	NA	-1025	NM_026330	67711	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.025000	0.472637	
mm_58251.1	chr6	145048746	145048946	-	1	NA	NA	NA	-34	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.060000	0.601990	
mm_132942.1	chr16	49857785	49857985	+	1	NA	NA	NA	2231	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.005000	0.402985	9(TTCCTTTAAAGG,-,0.00),10(TCCTTTAAAGGC,+,0.00),10(TCCTTTAAAGGC,-,0.00),11(CCTTTAAAGGCA,+,0.00)
mm_78497.1	chr9	32728505	32728705	+	1	NA	NA	NA	32563	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.015000	0.402985	
mm_122374.1	chr14	39473524	39473724	-	1	NA	NA	NA	-536	NM_008734	18183	Mm.258705	NM_008734	ENSMUSG00000041014	Nrg3	ska	neuregulin 3	protein-coding	0.130000	0.706468	
mm_52969.1	chr6	123207415	123207615	+	1	NA	NA	NA	-22328	NM_020001	56620	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	0.000000	0.398010	
mm_158694.1	chrX	160994576	160994776	-	1	NA	NA	NA	5	NM_001024624	382253	Mm.443717	NM_001024624	ENSMUSG00000031292	Cdkl5	BC038161|Stk9	cyclin-dependent kinase-like 5	protein-coding	0.110000	0.636816	
mm_132575.1	chr16	38240731	38240931	+	1	NA	NA	NA	53993	NM_010936	18171	Mm.8509	NM_010936	ENSMUSG00000022809	Nr1i2	PXR|PXR.1|PXR.2|PXR1|SXR|mPXR	nuclear receptor subfamily 1, group I, member 2	protein-coding	0.020000	0.398010	43(CTTTTTAAAGTC,+,0.00),72(TACCTTAAAAAC,-,0.00),74(CCTTAAAAACCA,+,0.00)
mm_158347.1	chrX	134474901	134475101	-	1	NA	NA	NA	1489	NM_028958	74469	Mm.103259	NM_028958	ENSMUSG00000009596	Taf7l	4933438I11Rik|Taf2q	TATA-box binding protein associated factor 7 like	protein-coding	0.065000	0.651741	
mm_21291.1	chr2	156991896	156992096	-	1	NA	NA	NA	115	NM_013865	29812	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0.125000	0.731343	
mm_157177.1	chrX	9655566	9655766	-	1	NA	NA	NA	7317	NM_025975	67117	Mm.29150	NM_025975	ENSMUSG00000031176	Dynlt3	2310075M16Rik|AU042796|Tcte1l	dynein light chain Tctex-type 3	protein-coding	0.000000	0.328358	
mm_62812.1	chr7	113220548	113220748	+	1	NA	NA	NA	13183	NM_007489	11865	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0.020000	0.512438	
mm_121436.1	chr14	120414688	120414888	+	1	NA	NA	NA	-63673	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.015000	0.482587	
mm_56061.1	chr6	86775072	86775272	-	1	NA	NA	NA	-58	NM_001331120	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.015000	0.462687	
mm_161778.1	chr17	37850279	37850479	+	1	NA	NA	NA	-215	NM_146890	258892	Mm.377736	NM_146890	ENSMUSG00000109212	Olfr126	MOR218-1	olfactory receptor 126	protein-coding	0.000000	0.199005	
mm_8558.1	chr1	155244379	155244579	-	1	NA	NA	NA	85776	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.105000	0.736318	
mm_48529.1	chr5	142903697	142903897	-	1	NA	NA	NA	2957	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.035000	0.487562	
mm_90588.1	chr10	128270462	128270662	+	1	NA	NA	NA	-14	NM_019963	20847	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	0.105000	0.641791	
mm_167719.1	chr9	99035663	99035863	-	1	NA	NA	NA	-73	NM_001080776	382097	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	0.030000	0.567164	
mm_161263.1	chr14	3394993	3395193	+	1	NA	NA	NA	0	NM_029288	100041774	Mm.360540	NM_029288	ENSMUSG00000095533	Gm10413	100038846|1700001E04Rik|ENSMUSG00000072749|Gm1973	predicted gene 10413	protein-coding	0.000000	0.452736	
mm_56581.1	chr6	106794092	106794292	-	1	NA	NA	NA	5895	NM_021449	58799	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.035000	0.452736	
mm_106204.1	chr11	116843380	116843580	-	1	NA	NA	NA	-31	NM_033398	107817	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	0.115000	0.701493	
mm_66189.1	chr7	34196558	34196758	-	1	NA	NA	NA	-11	NM_026549	68079	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.095000	0.676617	
mm_160234.1	chr7	102856981	102857181	-	1	NA	NA	NA	190	NM_001011536	258168	Mm.377368	NM_001011536	ENSMUSG00000060888	Olfr566	GA_x5J8B7W5P47-379997-380552|MOR14-7P	olfactory receptor 566	protein-coding	0.000000	0.457711	
mm_72921.1	chr8	91082079	91082279	+	1	NA	NA	NA	12122	NM_001282000	19651	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	retinoblastoma-like 2	protein-coding	0.030000	0.512438	
mm_108428.1	chr12	82245423	82245623	+	1	NA	NA	NA	-65826	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.010000	0.412935	
mm_34812.1	chr4	154936139	154936339	+	1	NA	NA	NA	-8162	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.015000	0.527363	
mm_85658.1	chr9	107667283	107667483	-	1	NA	NA	NA	16	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.070000	0.716418	
mm_167478.1	chr8	129067035	129067235	+	1	NA	NA	NA	1	NM_001168369	75453	Mm.286964	NM_029292	ENSMUSG00000056018	Ccdc7b	1700008F21Rik	coiled-coil domain containing 7B	protein-coding	0.045000	0.611940	
mm_18089.1	chr2	44984468	44984668	-	1	NA	NA	NA	38609	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.358209	
mm_134943.1	chr16	31275126	31275326	-	1	NA	NA	NA	51	NM_025800	66849	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	0.160000	0.736318	
mm_170269.1	chr18	21536515	21536715	+	1	NA	NA	NA	-114950	NM_001271580	74644	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding	0.030000	0.562189	
mm_161492.1	chr15	85978937	85979137	-	1	NA	NA	NA	54740	NM_009886	12614	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	0.050000	0.582090	
mm_122092.1	chr14	30625816	30626016	-	1	NA	NA	NA	292	NM_011103	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.085000	0.661692	
mm_128412.1	chr15	44748332	44748532	-	1	NA	NA	NA	240	NM_001285840	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding	0.155000	0.791045	
mm_161158.1	chr13	26769863	26770063	-	1	NA	NA	NA	202	NM_008232	15192	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	hepatoma derived growth factor-like 1	protein-coding	0.050000	0.582090	
mm_123927.1	chr14	73365650	73365850	-	1	NA	NA	NA	19521	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.025000	0.432836	
mm_125898.1	chr15	75940904	75941104	+	1	NA	NA	NA	52	NM_030199	78834	Mm.273264	NM_030199	ENSMUSG00000050846	Zfp623	2610029D06Rik|AI847036	zinc finger protein 623	protein-coding	0.100000	0.701493	
mm_96291.1	chr11	63131428	63131628	+	1	NA	NA	NA	71	NM_001302255	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.080000	0.641791	
mm_123922.1	chr14	73365371	73365571	-	1	NA	NA	NA	19800	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.020000	0.532338	
mm_12876.1	chr2	84658974	84659174	+	1	NA	NA	NA	-5	NM_001145100	100270744	Mm.393636	NM_001145100	ENSMUSG00000086598	Btbd18	Btbd18-ps|Gm13718|OTTMUSG00000013494	BTB (POZ) domain containing 18	protein-coding	0.115000	0.676617	
mm_128588.1	chr15	58112035	58112235	-	1	NA	NA	NA	22947	NM_027435	70472	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0.010000	0.318408	
mm_130424.1	chr15	98093270	98093470	-	1	NA	NA	NA	199	NM_144851	223870	Mm.384023	NM_144851	ENSMUSG00000033075	Senp1	2310046A20Rik|D15Ertd528e|E330036L07Rik|suPr-2	SUMO1/sentrin specific peptidase 1	protein-coding	0.120000	0.676617	
mm_119746.1	chr14	54136645	54136845	+	1	NA	NA	NA	117184	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.487562	-71(GCCTCTATAGGC,-,0.00),-52(CAGCCTAAAAGG,-,0.00)
mm_93394.1	chr10	107494654	107494854	-	1	NA	NA	NA	-25	NM_008657	17878	Mm.11	NM_008657	ENSMUSG00000035923	Myf6	MRF4|bHLHc4|herculin	myogenic factor 6	protein-coding	0.010000	0.437811	
mm_4217.1	chr1	171328921	171329121	+	1	NA	NA	NA	-124	NM_001128609	21945	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	0.070000	0.601990	
mm_164156.1	chr15	66782781	66782981	-	1	NA	NA	NA	48948	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.005000	0.388060	
mm_10787.1	chr2	24345315	24345515	+	1	NA	NA	NA	44	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.020000	0.487562	-33(TTCTTTATAAGC,-,0.00)
mm_163160.1	chr11	84068692	84068892	-	1	NA	NA	NA	-435	NM_019819	56405	Mm.240885	NM_019819	ENSMUSG00000018648	Dusp14	1110014C10Rik|2310042C07Rik|D11Ertd395e|MKP-L|Mkp6	dual specificity phosphatase 14	protein-coding	0.015000	0.487562	
mm_162421.1	chr1	91459380	91459580	+	1	NA	NA	NA	-152	NM_011066	18627	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.105000	0.631841	
mm_19782.1	chr2	106974271	106974471	-	1	NA	NA	NA	26	NM_001025102	212772	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	0.095000	0.691542	
mm_73462.1	chr8	106659557	106659757	+	1	NA	NA	NA	-23411	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.045000	0.512438	
mm_92250.1	chr10	70592715	70592915	-	1	NA	NA	NA	-3	NM_001162846	70911	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding	0.010000	0.447761	32(TGGTCTTTAAGG,-,0.00)
mm_11758.1	chr2	38511609	38511809	+	1	NA	NA	NA	12	NM_021606	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.190000	0.820896	
mm_78660.1	chr9	40487574	40487774	+	1	NA	NA	NA	-31910	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.055000	0.462687	
mm_109491.1	chr12	111445881	111446081	+	1	NA	NA	NA	3320	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.095000	0.661692	
mm_99825.1	chr11	108920346	108920546	+	1	NA	NA	NA	97	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.100000	0.651741	
mm_47728.1	chr5	130171455	130171655	-	1	NA	NA	NA	-264	NM_001199059	56715	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.075000	0.592040	
mm_105511.1	chr11	106216241	106216441	-	1	NA	NA	NA	26	NM_026009	67163	Mm.22109	NM_026009	ENSMUSG00000078622	Ccdc47	2610204L23Rik|C88307|asp4|calumin	coiled-coil domain containing 47	protein-coding	0.100000	0.611940	
mm_17678.1	chr2	32287891	32288091	-	1	NA	NA	NA	78	NR_110965	72931	Mm.27344	NM_175190	ENSMUSG00000044627	Swi5	1500019F05Rik|2900010J23Rik|AI046671	SWI5 recombination repair homolog (yeast)	protein-coding	0.080000	0.636816	
mm_94393.1	chr11	5541837	5542037	+	1	NA	NA	NA	280	NM_134033	104479	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	0.155000	0.776119	
mm_156546.1	chrX	151344124	151344324	+	1	NA	NA	NA	1	NM_198105	207375	Mm.391339	NM_198105	ENSMUSG00000025262	Fam120c	D930001I21Rik|ORF34	family with sequence similarity 120, member C	protein-coding	0.100000	0.701493	
mm_22817.1	chr3	27194163	27194363	+	1	NA	NA	NA	11259	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.005000	0.388060	
mm_22943.1	chr3	31954727	31954927	+	1	NA	NA	NA	52124	NM_028231	72413	Mm.64790	NM_028231	ENSMUSG00000037610	Kcnmb2	2700049B16Rik|3110031N04Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 2	protein-coding	0.000000	0.412935	
mm_12410.1	chr2	70509346	70509546	+	1	NA	NA	NA	627	NM_025744	66748	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	0.110000	0.721393	
mm_2581.1	chr1	118597174	118597374	+	1	NA	NA	NA	-30671	NM_023755	81879	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.000000	0.407960	
mm_41401.1	chr5	90786274	90786474	+	1	NA	NA	NA	273	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.025000	0.606965	
mm_144886.1	chr18	36801734	36801934	+	1	NA	NA	NA	71	NR_027885	378472	Mm.482379	NR_027885		Vaultrc5	Gm22653|Mvg1	vault RNA component 5	ncRNA	0.045000	0.482587	
mm_95723.1	chr11	54523237	54523437	+	1	NA	NA	NA	492	NM_001252496	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.020000	0.472637	
mm_135188.1	chr16	36131074	36131274	-	1	NA	NA	NA	15	NM_001033239	209294	Mm.300592	NM_001033239	ENSMUSG00000034362	Csta1	Csta	cystatin A1	protein-coding	0.005000	0.452736	42(CCTTTAAAATCC,+,0.00)
mm_101625.1	chr11	35980426	35980626	-	1	NA	NA	NA	-437	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.150000	0.791045	
mm_114640.1	chr13	76510547	76510747	+	1	NA	NA	NA	125686	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.010000	0.422886	
mm_152946.1	chr19	28975539	28975739	-	1	NA	NA	NA	-11485	NM_198651	381218	Mm.280653	NM_198651	ENSMUSG00000064202	4430402I18Rik	AW122618|Spata6l	RIKEN cDNA 4430402I18 gene	protein-coding	0.035000	0.537313	
mm_35201.1	chr4	19122430	19122630	-	1	NA	NA	NA	-158320	NM_013927	30952	Mm.445778	NM_013927	ENSMUSG00000056494	Cngb3	CCNC2|CNG6|Cngbeta2	cyclic nucleotide gated channel beta 3	protein-coding	0.000000	0.422886	25(TGCCTTATAAGA,-,0.00)
mm_140662.1	chr17	12895501	12895701	-	1	NA	NA	NA	14399	NM_001034866	240023	Mm.242315	NM_001034866	ENSMUSG00000073460	Pnldc1	Gm313	poly(A)-specific ribonuclease (PARN)-like domain containing 1	protein-coding	0.025000	0.512438	
mm_144304.1	chr18	12504021	12504221	+	1	NA	NA	NA	-78	NM_001347461	16774	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0.020000	0.567164	
mm_171713.1	chr4	80502111	80502311	-	1	NA	NA	NA	-332002	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.005000	0.333333	
mm_81261.1	chr9	108001962	108002162	+	1	NA	NA	NA	-586	NM_013785	27399	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0.050000	0.507463	
mm_17864.1	chr2	34826114	34826314	-	1	NA	NA	NA	21	NM_001164770	30050	Mm.4465	NM_013890	ENSMUSG00000035949	Fbxw2	2700071L08Rik|FBW2|Fwd2|MD6	F-box and WD-40 domain protein 2	protein-coding	0.115000	0.696517	
mm_44765.1	chr5	31697515	31697715	-	1	NA	NA	NA	-5	NM_153196	71336	Mm.22519	NM_153196	ENSMUSG00000029136	Rbks	5230400M11Rik|AI326806|RBSK|RK	ribokinase	protein-coding	0.085000	0.676617	
mm_39275.1	chr5	3845082	3845282	+	1	NA	NA	NA	9	NM_172879	242838	Mm.482273	NM_172879	ENSMUSG00000040367	Lrrd1	4932412H11Rik	leucine rich repeats and death domain containing 1	protein-coding	0.085000	0.626866	
mm_98608.1	chr11	95842195	95842395	+	1	NA	NA	NA	0	NM_023121	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.020000	0.616915	
mm_53359.1	chr6	129353343	129353543	+	1	NA	NA	NA	3199	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.010000	0.383085	22(TTCTTTAAAAAG,-,0.00)
mm_123215.1	chr14	59440993	59441193	-	1	NA	NA	NA	112	NM_026908	69008	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding	0.065000	0.646766	
mm_118329.1	chr13	113663557	113663757	-	1	NA	NA	NA	19	NM_019960	56534	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	0.045000	0.532338	-33(GGCTATAAATAG,-,0.00),-31(CTATAAATAGCC,+,0.00)
mm_89320.1	chr10	87930859	87931059	+	1	NA	NA	NA	-35712	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.015000	0.373134	-43(TTGTTTAAAAAG,-,0.00),79(GCCTCTAAAGAG,-,0.00)
mm_23134.1	chr3	38438558	38438758	+	1	NA	NA	NA	46158	NM_001167883	99696	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.010000	0.402985	13(AGCCCTTAAAGC,-,0.00)
mm_103461.1	chr11	76398991	76399191	-	1	NA	NA	NA	50	NM_008750	18230	Mm.27915	NM_008750	ENSMUSG00000020844	Nxn	l11Jus13	nucleoredoxin	protein-coding	0.120000	0.771144	
mm_37545.1	chr4	125124929	125125129	-	1	NA	NA	NA	2852	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.005000	0.587065	
mm_145894.1	chr18	65587391	65587591	+	1	NA	NA	NA	7261	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.015000	0.547264	
mm_127127.1	chr15	98111981	98112181	+	1	NA	NA	NA	21	NM_021514	18642	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	0.010000	0.502488	
mm_122378.1	chr14	40294641	40294841	-	1	NA	NA	NA	598224	NM_177816	328381	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.010000	0.487562	
mm_93204.1	chr10	94829422	94829622	-	1	NA	NA	NA	115056	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.020000	0.587065	
mm_149980.1	chr19	29101391	29101591	+	1	NA	NA	NA	116	NM_021525	59028	Mm.28630	NM_021525	ENSMUSG00000024785	Rcl1	2310040A02Rik|AI789745|C76567|RPCL1|Rnac	RNA terminal phosphate cyclase-like 1	protein-coding	0.115000	0.691542	
mm_124723.1	chr15	6579976	6580176	+	1	NA	NA	NA	229	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.035000	0.537313	
mm_6430.1	chr1	73952698	73952898	-	1	NA	NA	NA	-88332	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.020000	0.606965	
mm_9553.1	chr1	173933363	173933563	-	1	NA	NA	NA	9029	NM_001302649	15950	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Mndal	interferon activated gene 203	protein-coding	0.020000	0.383085	
mm_6145.1	chr1	64927964	64928164	-	1	NA	NA	NA	28760	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.025000	0.547264	
mm_110648.1	chr12	59011884	59012084	-	1	NA	NA	NA	33	NM_009147	20334	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	0.090000	0.726368	
mm_159159.1	chr2	89836062	89836262	-	1	NA	NA	NA	-219	NM_146983	258985	Mm.223374	NM_146983	ENSMUSG00000075073	Olfr1256	MOR231-1	olfactory receptor 1256	protein-coding	0.005000	0.427861	
mm_71169.1	chr8	40546531	40546731	+	1	NA	NA	NA	-30784	NM_001271542	18983	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0.005000	0.328358	
mm_170326.1	chr18	42877633	42877833	-	1	NA	NA	NA	21773	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.000000	0.452736	-75(CCCTTTTTAAGA,-,0.00),-73(CTTTTTAAGACC,+,0.00)
mm_114013.1	chr13	52610629	52610829	+	1	NA	NA	NA	13847	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.015000	0.482587	
mm_62899.1	chr7	116504320	116504520	+	1	NA	NA	NA	51	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.075000	0.666667	
mm_76469.1	chr8	85386152	85386352	-	1	NA	NA	NA	-5211	NM_001297612	213435	Mm.32804	NM_175441	ENSMUSG00000031698	Mylk3	D830007F02Rik|MLCK	myosin light chain kinase 3	protein-coding	0.015000	0.502488	
mm_169503.1	chr14	78725695	78725895	-	1	NA	NA	NA	-706	NM_001081336	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.055000	0.562189	
mm_81116.1	chr9	106454153	106454353	+	1	NA	NA	NA	415	NM_021567	59092	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	0.025000	0.562189	
mm_130221.1	chr15	96197919	96198119	-	1	NA	NA	NA	-45	NR_040423	70040	Mm.437832	NR_040423		2610037D02Rik	AU024679	RIKEN cDNA 2610037D02 gene	ncRNA	0.020000	0.527363	
mm_1869.1	chr1	85598989	85599189	+	1	NA	NA	NA	-279	NM_030194	109032	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|ENSMUSG00000075603|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.000000	0.412935	
mm_87619.1	chr10	57794569	57794769	+	1	NA	NA	NA	125	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.060000	0.681592	
mm_121058.1	chr14	87416609	87416809	+	1	NA	NA	NA	126	NM_001253755	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0.050000	0.527363	
mm_26218.1	chr3	138804426	138804626	+	1	NA	NA	NA	62318	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.000000	0.303483	
mm_158876.1	chrY	1459677	1459877	-	1	NA	NA	NA	5	NM_148943	107868	Mm.347376	NM_148943	ENSMUSG00000069044	Usp9y	Dffry|Fafl2	ubiquitin specific peptidase 9, Y chromosome	protein-coding	0.045000	0.497512	
mm_118882.1	chr14	25872764	25872964	+	1	NA	NA	NA	30029	NM_207229	211623	Mm.439926	NM_207229	ENSMUSG00000095304	Plac9a	Plac9	placenta specific 9a	protein-coding	0.010000	0.567164	
mm_33275.1	chr4	128688638	128688838	+	1	NA	NA	NA	0	NM_018774	54383	Mm.473738	NM_018774	ENSMUSG00000028796	Phc2	A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36	polyhomeotic-like 2 (Drosophila)	protein-coding	0.010000	0.512438	
mm_131647.1	chr16	20532394	20532594	+	1	NA	NA	NA	-2986	NM_001302970	11773	Mm.18946	NM_009679	ENSMUSG00000022841	Ap2m1	-	adaptor-related protein complex 2, mu 1 subunit	protein-coding	0.010000	0.492537	
mm_135678.1	chr16	52419925	52420125	-	1	NA	NA	NA	33056	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.358209	
mm_101164.1	chr11	16973369	16973569	-	1	NA	NA	NA	22059	NM_176982	319701	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.015000	0.417910	
mm_42304.1	chr5	114774848	114775048	+	1	NA	NA	NA	35	NR_027872	67642	Mm.482535	NM_175120	ENSMUSG00000092183	4930515G01Rik	-	RIKEN cDNA 4930515G01 gene	ncRNA	0.200000	0.810945	
mm_53282.1	chr6	128838350	128838550	+	1	NA	NA	NA	-12135	NM_030599	80782	Mm.6180	NM_030599	ENSMUSG00000079298	Klrb1b	Klrb1d|Ly55b|Ly55d|NKR-P1B|NKR-P1D|Nkrp1-b|Nkrp1d|ly-55b|ly-55d	killer cell lectin-like receptor subfamily B member 1B	protein-coding	0.035000	0.447761	
mm_144191.1	chr18	7869262	7869462	+	1	NA	NA	NA	165	NM_153085	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.115000	0.746269	
mm_19242.1	chr2	84715217	84715417	-	1	NA	NA	NA	-153	NM_144887	228136	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0.175000	0.741294	
mm_80474.1	chr9	78175841	78176041	+	1	NA	NA	NA	27	NR_040401	320295	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	0.095000	0.621891	
mm_80309.1	chr9	74157148	74157348	+	1	NA	NA	NA	46914	NM_001033500	546144	Mm.335289	NM_177908	ENSMUSG00000044976	Wdr72	AW558070|D230040E23	WD repeat domain 72	protein-coding	0.030000	0.522388	
mm_83789.1	chr9	52168755	52168955	-	1	NA	NA	NA	-744	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.075000	0.671642	
mm_104844.1	chr11	99230796	99230996	-	1	NA	NA	NA	121	NM_020618	57376	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	0.075000	0.636816	
mm_27767.1	chr3	70807191	70807391	-	1	NA	NA	NA	0	NR_040556	625901	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA	0.015000	0.432836	
mm_112445.1	chr13	5861440	5861640	+	1	NA	NA	NA	51	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.080000	0.651741	
mm_123122.1	chr14	56132493	56132693	-	1	NA	NA	NA	0	NM_010372	14941	Mm.482071	NM_010372	ENSMUSG00000059256	Gzmd	CCP5|Ctla-5|Ctla5	granzyme D	protein-coding	0.005000	0.502488	
mm_25269.1	chr3	104795801	104796001	+	1	NA	NA	NA	6867	NM_007484	11853	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0.030000	0.542289	
mm_83115.1	chr9	40376739	40376939	-	1	NA	NA	NA	43367	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.005000	0.547264	
mm_144384.1	chr18	20666609	20666809	+	1	NA	NA	NA	1459	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.020000	0.487562	
mm_117977.1	chr13	100103940	100104140	-	1	NA	NA	NA	30	NM_001081061	544971	Mm.288546	NM_001081061	ENSMUSG00000049658	Bdp1	AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding	0.115000	0.656716	
mm_95687.1	chr11	54303954	54304154	+	1	NA	NA	NA	-150	NM_144823	216739	Mm.267478	NM_144823	ENSMUSG00000020333	Acsl6	A330035H04Rik|AW050338|Facl6|LACS|Lacsl|mKIAA0837	acyl-CoA synthetase long-chain family member 6	protein-coding	0.110000	0.746269	
mm_166482.1	chr5	146070138	146070338	-	1	NA	NA	NA	-9020	NM_001105160	100041449	Mm.301900	NM_001105160	ENSMUSG00000061292	Cyp3a59	ENSMUSG00000061292	cytochrome P450, family 3, subfamily a, polypeptide 59	protein-coding	0.005000	0.427861	
mm_149005.1	chr19	8722853	8723053	+	1	NA	NA	NA	416	NM_001161413	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.065000	0.582090	-32(TTCCCTAAAAGG,-,0.00)
mm_89103.1	chr10	84572440	84572640	+	1	NA	NA	NA	-4407	NM_146008	216198	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	0.010000	0.472637	
mm_68346.1	chr7	106506516	106506716	-	1	NA	NA	NA	-65543	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.010000	0.437811	
mm_150235.1	chr19	34008205	34008405	+	1	NA	NA	NA	51	NM_001205349	240633	Mm.58924	NM_172837	ENSMUSG00000024771	Lipk	9930115F20|BC055815|Lipl2	lipase, family member K	protein-coding	0.025000	0.457711	85(GTGTTTTAAGGG,-,0.00)
mm_153842.1	chr19	46332602	46332802	-	1	NA	NA	NA	4518	NM_133694	68431	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	0.015000	0.601990	
mm_167086.1	chr7	102250168	102250368	+	1	NA	NA	NA	-150	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.070000	0.686567	
mm_55773.1	chr6	78468427	78468627	-	1	NA	NA	NA	347	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.010000	0.467662	
mm_123313.1	chr14	62414203	62414403	-	1	NA	NA	NA	41986	NM_001204340	239134	Mm.236557	NM_172810	ENSMUSG00000021933	Gucy1b2	B930025B03|GC-SB2	guanylate cyclase 1, soluble, beta 2	protein-coding	0.025000	0.467662	
mm_152803.1	chr19	21674798	21674998	-	1	NA	NA	NA	21589	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.015000	0.457711	
mm_124211.1	chr14	99339634	99339834	-	1	NA	NA	NA	41043	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.020000	0.388060	
mm_11785.1	chr2	40556803	40557003	+	1	NA	NA	NA	-1330565	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding	0.030000	0.492537	
mm_61806.1	chr7	87246559	87246759	+	1	NA	NA	NA	10	NM_001285833	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	0.100000	0.741294	
mm_82384.1	chr9	14662838	14663038	-	1	NA	NA	NA	-47938	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.025000	0.462687	-64(CTCTTTTTAAAC,-,0.00),-62(CTTTTTAAACTC,+,0.00),-29(ACCTTTTAAAAC,-,0.00),-28(CCTTTTAAAACT,+,0.00)
mm_7388.1	chr1	110977274	110977474	-	1	NA	NA	NA	-2	NM_001081386	227485	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding	0.015000	0.407960	
mm_169513.1	chr1	4857710	4857910	+	1	NA	NA	NA	116	NM_011541	21399	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.130000	0.706468	
mm_74127.1	chr8	123186257	123186457	+	1	NA	NA	NA	122	NM_007876	13479	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	0.025000	0.587065	-34(CCCTTTTAAAGA,-,0.00),-33(CCTTTTAAAGAG,+,0.00)
mm_87987.1	chr10	64054941	64055141	+	1	NA	NA	NA	35214	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.010000	0.393035	
mm_148895.1	chr19	6909607	6909807	+	1	NA	NA	NA	9	NM_026306	67674	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.100000	0.686567	
mm_18054.1	chr2	39225995	39226195	-	1	NA	NA	NA	243	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding	0.145000	0.756219	
mm_48451.1	chr5	140702181	140702381	-	1	NA	NA	NA	97	NM_028833	74239	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	0.105000	0.691542	
mm_130592.1	chr15	99702411	99702611	-	1	NA	NA	NA	224	NM_031842	83797	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.105000	0.766169	
mm_77333.1	chr8	119558337	119558537	-	1	NA	NA	NA	324	NM_001167910	56453	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	0.135000	0.696517	
mm_161738.1	chr17	32387743	32387943	-	1	NA	NA	NA	-26	NM_212438	22404	Mm.274948	NM_011717	ENSMUSG00000024050	Wiz	-	widely-interspaced zinc finger motifs	protein-coding	0.005000	0.497512	
mm_162817.1	chr10	79888030	79888230	-	1	NA	NA	NA	1818	NM_015779	50701	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0.015000	0.507463	
mm_133918.1	chr16	97557976	97558176	+	1	NA	NA	NA	21993	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.000000	0.457711	-62(GCTCTTAGAGAG,+,0.00)
mm_47093.1	chr5	117484216	117484416	-	1	NA	NA	NA	70314	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.030000	0.497512	
mm_61131.1	chr7	55904580	55904780	+	1	NA	NA	NA	57813	NM_001256133	93790	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	0.000000	0.368159	
mm_72530.1	chr8	83989440	83989640	+	1	NA	NA	NA	-8132	NM_001081415	666704	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.025000	0.512438	-3(TCTTTTAAACTC,+,0.00)
mm_149653.1	chr19	18670731	18670931	+	1	NA	NA	NA	51	NM_026120	67383	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	0.185000	0.771144	
mm_50815.1	chr6	54429446	54429646	+	1	NA	NA	NA	675	NR_033635	100042056	Mm.448157	NM_198118	ENSMUSG00000073067	9130019P16Rik	6430501H15Rik|OTTMUSG00000023151	RIKEN cDNA 9130019P16 gene	ncRNA	0.110000	0.761194	
mm_19066.1	chr2	77621182	77621382	-	1	NA	NA	NA	81990	NM_001113399	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.030000	0.547264	
mm_38437.1	chr4	139599033	139599233	-	1	NA	NA	NA	-23761	NM_175438	212647	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	0.030000	0.552239	-39(CAGCTTTAAAGC,-,0.00),-37(GCTTTAAAGCCA,+,0.00)
mm_146900.1	chr18	30608956	30609156	-	1	NA	NA	NA	336160	NM_181414	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphoinositide-3-kinase, class 3	protein-coding	0.025000	0.432836	
mm_12050.1	chr2	59161869	59162069	+	1	NA	NA	NA	1119	NM_175464	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.095000	0.656716	
mm_39506.1	chr5	21208527	21208727	+	1	NA	NA	NA	22360	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.000000	0.328358	
mm_79709.1	chr9	61370688	61370888	+	1	NA	NA	NA	-1578	NM_001083928	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.060000	0.606965	
mm_49710.1	chr6	34419301	34419501	+	1	NA	NA	NA	7039	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.005000	0.422886	
mm_44288.1	chr5	8368035	8368235	-	1	NA	NA	NA	25	NM_001007221	11496	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.085000	0.716418	
mm_160484.1	chr8	125054047	125054247	+	1	NA	NA	NA	-48	NM_174853	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	0.145000	0.781095	
mm_66295.1	chr7	38019429	38019629	-	1	NA	NA	NA	23	NM_011274	19777	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	0.155000	0.791045	
mm_139276.1	chr17	48247627	48247827	+	1	NA	NA	NA	-2	NM_021407	58218	Mm.302438	NM_021407	ENSMUSG00000041754	Trem3	BB134760	triggering receptor expressed on myeloid cells 3	protein-coding	0.010000	0.517413	
mm_125509.1	chr15	55557490	55557690	+	1	NA	NA	NA	182	NM_001168250	105837	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0.085000	0.567164	
mm_25409.1	chr3	107291148	107291348	+	1	NA	NA	NA	18	NM_001310705	229699	Mm.38384	NM_146136	ENSMUSG00000027896	Slc16a4	AW146050|MCT 5	solute carrier family 16 (monocarboxylic acid transporters), member 4	protein-coding	0.020000	0.552239	
mm_70072.1	chr7	142653038	142653238	-	1	NA	NA	NA	1858	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.005000	0.467662	
mm_129929.1	chr15	84557513	84557713	-	1	NA	NA	NA	210	NM_177630	223732	Mm.6471	NM_177630	ENSMUSG00000055745	Ldoc1l	BC058638|Mar6|Mart6	leucine zipper, down-regulated in cancer 1-like	protein-coding	0.110000	0.721393	
mm_59163.1	chr7	24387904	24388104	+	1	NA	NA	NA	-11624	NM_028047	71997	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.015000	0.437811	
mm_40053.1	chr5	33995955	33996155	+	1	NA	NA	NA	71	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.120000	0.701493	
mm_154858.1	chrX	20658296	20658496	+	1	NA	NA	NA	94	NM_009457	22201	Mm.1104	NM_009457	ENSMUSG00000001924	Uba1	A1S9|Sbx|Ube-1|Ube1x	ubiquitin-like modifier activating enzyme 1	protein-coding	0.065000	0.572139	
mm_17808.1	chr2	33468433	33468633	-	1	NA	NA	NA	-1	NM_001025594	71834	Mm.44186	NM_027947	ENSMUSG00000026788	Zbtb43	1700010E06Rik|Zfp297b|mKIAA0414	zinc finger and BTB domain containing 43	protein-coding	0.125000	0.661692	
mm_63285.1	chr7	126777682	126777882	+	1	NA	NA	NA	807	NM_025347	66090	Mm.27114	NM_025347	ENSMUSG00000042675	Ypel3	0610043B10Rik|1190001G19Rik|Suap	yippee-like 3 (Drosophila)	protein-coding	0.040000	0.621891	
mm_86356.1	chr9	123678776	123678976	-	1	NA	NA	NA	-44	NM_139142	102680	Mm.440867	NM_139142	ENSMUSG00000036814	Slc6a20a	A730081N20Rik|AU022428|Xt3s1|Xtrp3s1	solute carrier family 6 (neurotransmitter transporter), member 20A	protein-coding	0.105000	0.706468	
mm_43716.1	chr5	139406356	139406556	+	1	NA	NA	NA	69	NM_177000	319772	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.025000	0.547264	
mm_140103.1	chr17	78508050	78508250	+	1	NA	NA	NA	87	NM_028813	74199	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik	vitrin	protein-coding	0.015000	0.462687	
mm_14667.1	chr2	138714535	138714735	+	1	NA	NA	NA	-105294	NR_035477	100316816		NR_035477	ENSMUSG00000088983	Mir1952	mmu-mir-1952	microRNA 1952	ncRNA	0.005000	0.412935	
mm_171500.1	chr4	146263446	146263646	+	1	NA	NA	NA	-6839	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.090000	0.741294	
mm_39768.1	chr5	30013700	30013900	+	1	NA	NA	NA	686	NM_031168	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.000000	0.422886	
mm_102649.1	chr11	63119163	63119363	-	1	NA	NA	NA	-9719	NM_001302258	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.015000	0.427861	-34(TGATATAAAAGC,-,0.00)
mm_83043.1	chr9	37433018	37433218	-	1	NA	NA	NA	57	NM_001164767	19649	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0.080000	0.731343	
mm_138052.1	chr17	33926313	33926513	+	1	NA	NA	NA	-3481	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.060000	0.621891	
mm_120270.1	chr14	63123799	63123999	+	1	NA	NA	NA	1437	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.030000	0.572139	-63(CTCCTTTAAAGC,-,0.00),-62(TCCTTTAAAGCC,+,0.00),-61(CCTTTAAAGCCA,+,0.00)
mm_137305.1	chr17	24850647	24850847	+	1	NA	NA	NA	80	NM_001159626	14651	Mm.43784	NM_024284	ENSMUSG00000024158	Hagh	BC019817|Glo-2|Glo2|Rsp29	hydroxyacyl glutathione hydrolase	protein-coding	0.125000	0.716418	
mm_10465.1	chr2	14315255	14315455	+	1	NA	NA	NA	54352	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.010000	0.432836	
mm_65820.1	chr7	29155879	29156079	-	1	NA	NA	NA	231	NM_001146023	73833	Mm.260890	NM_028661	ENSMUSG00000030590	Fam98c	1110006G06Rik|AI836081|AV026483|B230110F21Rik	family with sequence similarity 98, member C	protein-coding	0.140000	0.751244	
mm_118569.1	chr14	18531239	18531439	+	1	NA	NA	NA	-199495	NM_009455	22194	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	0.065000	0.577114	
mm_87025.1	chr10	28247689	28247889	+	1	NA	NA	NA	172969	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0.020000	0.363184	
mm_71198.1	chr8	40884734	40884934	+	1	NA	NA	NA	22467	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.010000	0.293532	
mm_42293.1	chr5	114412731	114412931	+	1	NA	NA	NA	8363	NR_105994	102465621		NR_105994	ENSMUSG00000098731	Mir7027	Gm27831|mmu-mir-7027	microRNA 7027	ncRNA	0.045000	0.527363	
mm_72613.1	chr8	84601330	84601530	+	1	NA	NA	NA	61422	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.035000	0.532338	
mm_125704.1	chr15	67996554	67996754	+	1	NA	NA	NA	262202	NM_001145888	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.010000	0.497512	
mm_155979.1	chrX	106126799	106126999	+	1	NA	NA	NA	-16376	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.010000	0.368159	
mm_80312.1	chr9	74848399	74848599	+	1	NA	NA	NA	62	NR_045284	100503019	Mm.482658	NR_045284	ENSMUSG00000066477	Gm16551	-	predicted gene 16551	ncRNA	0.075000	0.542289	33(GTCCCTAAATGC,-,0.00),35(CCCTAAATGCGC,+,0.00)
mm_3886.1	chr1	161142581	161142781	+	1	NA	NA	NA	-31	NM_028664	73844	Mm.38830	NM_028664	ENSMUSG00000044835	Ankrd45	4933409K03Rik	ankyrin repeat domain 45	protein-coding	0.060000	0.601990	
mm_35636.1	chr4	43515633	43515833	-	1	NA	NA	NA	7821	NM_009416	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.015000	0.547264	
mm_48758.1	chr5	148329971	148330171	-	1	NA	NA	NA	62744	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.025000	0.557214	
mm_81240.1	chr9	107928621	107928821	+	1	NA	NA	NA	252	NM_026338	67722	Mm.390222	NM_026338	ENSMUSG00000066368	Actl11	4921517D21Rik	actin-like 11	protein-coding	0.020000	0.552239	
mm_107174.1	chr12	24831474	24831674	+	1	NA	NA	NA	-25	NM_026037	67216	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	0.150000	0.796020	
mm_130589.1	chr15	99637692	99637892	-	1	NA	NA	NA	13864	NM_001253808	26934	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	0.010000	0.422886	
mm_137881.1	chr17	31585797	31585997	+	1	NA	NA	NA	21124	NM_016670	18771	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.015000	0.601990	
mm_166955.1	chr7	44476432	44476632	+	1	NA	NA	NA	6185	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.407960	
mm_12716.1	chr2	77462544	77462744	+	1	NA	NA	NA	0	NR_040368	100503106	Mm.443215	NR_040368	ENSMUSG00000085845	Gm13944	OTTMUSG00000015155	predicted gene 13944	ncRNA	0.010000	0.527363	
mm_88196.1	chr10	70097057	70097257	+	1	NA	NA	NA	36	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.205000	0.840796	
mm_110651.1	chr12	59040240	59040440	-	1	NA	NA	NA	21132	NM_001306218	78232	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	0.035000	0.467662	
mm_35457.1	chr4	40703071	40703271	-	1	NA	NA	NA	23	NM_001025444	66408	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0.075000	0.562189	
mm_86926.1	chr10	24149234	24149434	+	1	NA	NA	NA	17	NM_016797	53331	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.075000	0.711443	
mm_154788.1	chrX	13071438	13071638	+	1	NA	NA	NA	40	NM_009481	22284	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	0.090000	0.661692	
mm_56884.1	chr6	119030936	119031136	-	1	NA	NA	NA	77459	NM_001159534	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.005000	0.303483	
mm_38555.1	chr4	141642039	141642239	-	1	NA	NA	NA	-18305	NM_001013780	384071	Mm.295682	NM_001013780	ENSMUSG00000040740	Slc25a34	Gm1369	solute carrier family 25, member 34	protein-coding	0.010000	0.547264	
mm_32074.1	chr4	98041496	98041696	+	1	NA	NA	NA	263970	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.015000	0.542289	
mm_123099.1	chr14	55881886	55882086	-	1	NA	NA	NA	2270	NM_019820	56410	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0.015000	0.492537	-38(TCTTTTAAGGTC,+,0.00)
mm_45086.1	chr5	44099091	44099291	-	1	NA	NA	NA	2545	NM_008935	19126	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.015000	0.512438	
mm_43466.1	chr5	136692994	136693194	+	1	NA	NA	NA	-52	NM_001303019	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.005000	0.492537	
mm_90252.1	chr10	121626558	121626758	+	1	NA	NA	NA	-342	NM_001081056	73192	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	0.060000	0.616915	4(GCTTTTAGAAGA,+,0.00)
mm_95276.1	chr11	45851932	45852132	+	1	NA	NA	NA	68	NM_001045520	216705	Mm.169673	NM_001045520	ENSMUSG00000006169	Clint1	AI642036|AW537616|C530049I24Rik|Enth|Epn4|F630206G17Rik|mKIAA0171	clathrin interactor 1	protein-coding	0.165000	0.791045	
mm_13077.1	chr2	91203163	91203363	+	1	NA	NA	NA	351	NM_007387	11432	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.030000	0.417910	
mm_47857.1	chr5	134563744	134563944	-	1	NA	NA	NA	-3673	NM_001013751	214292	Mm.425290	NM_001013751	ENSMUSG00000085957	Syna	Gm453|Gm52|syncytin-A	syncytin a	protein-coding	0.030000	0.572139	
mm_9540.1	chr1	173880053	173880253	-	1	NA	NA	NA	34	NM_001170853	100040462	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	0.005000	0.427861	
mm_112303.1	chr12	114746658	114746858	-	1	NA	NA	NA	-233064	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.005000	0.402985	
mm_111861.1	chr12	107970614	107970814	-	1	NA	NA	NA	32700	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.010000	0.348259	
mm_33342.1	chr4	129287606	129287806	+	1	NA	NA	NA	85	NM_023485	68828	Mm.132243	NM_023485	ENSMUSG00000001333	Sync	1110057H03Rik|SNIP4	syncoilin	protein-coding	0.145000	0.751244	
mm_72200.1	chr8	72571919	72572119	+	1	NA	NA	NA	-84	NM_144534	74166	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	0.095000	0.746269	
mm_5134.1	chr1	9700265	9700465	-	1	NA	NA	NA	-156	NM_008651	17864	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	0.135000	0.746269	
mm_970.1	chr1	58278210	58278410	+	1	NA	NA	NA	-16	NM_001008419	213043	Mm.414292	NM_001008419	ENSMUSG00000079554	Aox2	Aoh3|Aox3l1	aldehyde oxidase 2	protein-coding	0.010000	0.542289	-30(ACTTAAAAAGCC,+,0.00)
mm_112163.1	chr12	113330421	113330621	-	1	NA	NA	NA	144618	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.015000	0.522388	
mm_76029.1	chr8	76551751	76551951	-	1	NA	NA	NA	348322	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA	0.005000	0.547264	
mm_140088.1	chr17	75465386	75465586	+	1	NA	NA	NA	-52	NM_207246	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding	0.040000	0.527363	
mm_51751.1	chr6	87496326	87496526	+	1	NA	NA	NA	-99	NM_175476	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.020000	0.547264	
mm_146877.1	chr18	25486910	25487110	-	1	NA	NA	NA	266973	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.105000	0.781095	
mm_20202.1	chr2	125100790	125100990	-	1	NA	NA	NA	22770	NM_001162417	17876	Mm.18535	NM_010852	ENSMUSG00000027201	Myef2	9430071B01|mKIAA1341	myelin basic protein expression factor 2, repressor	protein-coding	0.000000	0.398010	
mm_29035.1	chr3	102167611	102167811	-	1	NA	NA	NA	36982	NM_177545	229658	Mm.118004	NM_177545	ENSMUSG00000027860	Vangl1	Kitenin|Lpp2|Stb2|Stbm	vang-like 1 (van gogh, Drosophila)	protein-coding	0.005000	0.507463	
mm_142267.1	chr17	39845916	39846116	-	1	NA	NA	NA	3019	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.120000	0.671642	
mm_76474.1	chr8	85432659	85432859	-	1	NA	NA	NA	82	NR_033144	66714	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	0.110000	0.686567	
mm_20671.1	chr2	132247583	132247783	-	1	NA	NA	NA	105	NM_027478	70612	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.135000	0.706468	
mm_114460.1	chr13	67499392	67499592	+	1	NA	NA	NA	1030	NM_001007575	238693	Mm.478914	NM_001007575	ENSMUSG00000071291	Zfp58	A530094I17Rik|Mfg-1|Mfg1|Rslcan5|Zfp817	zinc finger protein 58	protein-coding	0.020000	0.487562	
mm_15464.1	chr2	157455921	157456121	+	1	NA	NA	NA	31728	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.005000	0.447761	
mm_2342.1	chr1	92859598	92859798	+	1	NA	NA	NA	9320	NR_029559	387167		NR_029559	ENSMUSG00000065470	Mir149	Mirn149|mir-149|mmu-mir-149	microRNA 149	ncRNA	0.005000	0.557214	
mm_23256.1	chr3	51340079	51340279	+	1	NA	NA	NA	465	NM_001291059	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.180000	0.805970	
mm_57644.1	chr6	128434290	128434490	-	1	NA	NA	NA	4241	NM_010219	14228	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	59kDa|AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	0.030000	0.567164	
mm_106507.1	chr11	120453378	120453578	-	1	NA	NA	NA	22	NR_126089	18588	Mm.39200	NM_012065	ENSMUSG00000025386	Pde6g	Pdeg|p3AT	phosphodiesterase 6G, cGMP-specific, rod, gamma	protein-coding	0.020000	0.522388	
mm_93598.1	chr10	117150307	117150507	-	1	NA	NA	NA	-1933	NM_177798	327826	Mm.135965	NM_177798	ENSMUSG00000020170	Frs2	4732458E18|C330018A15Rik|Frs2alpha|SNT1	fibroblast growth factor receptor substrate 2	protein-coding	0.020000	0.537313	
mm_36605.1	chr4	88938783	88938983	-	1	NA	NA	NA	3159	NR_132734	106557447	Mm.484668	NR_132734		LOC106557447	-	uncharacterized LOC106557447	ncRNA	0.030000	0.492537	
mm_169829.1	chr16	24529276	24529476	+	1	NA	NA	NA	62	NR_038091	624582	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.040000	0.552239	
mm_40501.1	chr5	57721904	57722104	+	1	NA	NA	NA	3923	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.025000	0.472637	
mm_148725.1	chr19	5846877	5847077	+	1	NA	NA	NA	-1497	NR_003513	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.015000	0.447761	
mm_28235.1	chr3	88455630	88455830	-	1	NA	NA	NA	31	NM_013658	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.035000	0.636816	
mm_31716.1	chr4	62638480	62638680	+	1	NA	NA	NA	18908	NM_134257	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.005000	0.477612	
mm_83964.1	chr9	57148256	57148456	-	1	NA	NA	NA	-1322	NM_028347	72774	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0.070000	0.592040	
mm_64458.1	chr7	142660481	142660681	+	1	NA	NA	NA	690	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.065000	0.606965	-33(GCCTCTAAAGGG,-,0.00),-32(CCTCTAAAGGGC,+,0.00)
mm_141671.1	chr17	33909050	33909250	-	1	NA	NA	NA	28	NR_045146	407803	Mm.250393	NR_045146	ENSMUSG00000092564	BC051226	-	cDNA sequence BC051226	ncRNA	0.035000	0.567164	
mm_33491.1	chr4	130823291	130823491	+	1	NA	NA	NA	30854	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.010000	0.597015	
mm_71681.1	chr8	60993118	60993318	+	1	NA	NA	NA	25	NM_175089	18004	Mm.486881	NM_175089	ENSMUSG00000031644	Nek1	D8Ertd790e|kat	NIMA (never in mitosis gene a)-related expressed kinase 1	protein-coding	0.090000	0.676617	
mm_46230.1	chr5	99215308	99215508	-	1	NA	NA	NA	37519	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.005000	0.512438	
mm_18017.1	chr2	38484587	38484787	-	1	NA	NA	NA	-27010	NM_021606	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.030000	0.542289	
mm_157521.1	chrX	50635206	50635406	-	1	NA	NA	NA	15	NR_015505	103012	Mm.482523	NR_015505	ENSMUSG00000085396	Firre	5830467J12Rik|6720401G13Rik|AW048145	functional intergenic repeating RNA element	ncRNA	0.055000	0.681592	
mm_135183.1	chr16	35983815	35984015	-	1	NA	NA	NA	552	NM_008465	16646	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0.120000	0.721393	
mm_118570.1	chr14	19127667	19127867	+	1	NA	NA	NA	-234140	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0.010000	0.457711	
mm_27684.1	chr3	65958160	65958360	-	1	NA	NA	NA	-35	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.155000	0.716418	
mm_164389.1	chr16	32487524	32487724	-	1	NA	NA	NA	255	NM_145932	106407	Mm.476915	NM_145932	ENSMUSG00000035699	Slc51a	AV001382|AW261577|D630035O19Rik|OSTalpha|Osta	solute carrier family 51, alpha subunit	protein-coding	0.030000	0.547264	
mm_7233.1	chr1	93429383	93429583	-	1	NA	NA	NA	16218	NM_001301364	110611	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0.010000	0.447761	
mm_128021.1	chr15	24724744	24724944	-	1	NA	NA	NA	688920	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.010000	0.487562	
mm_114886.1	chr13	94293947	94294147	+	1	NA	NA	NA	-8216	NM_001346609	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.035000	0.457711	
mm_111767.1	chr12	104013665	104013865	-	1	NA	NA	NA	-113	NM_027997	71907	Mm.326723	NM_027997	ENSMUSG00000058260	Serpina9	2310014L03Rik|AW049635|Centerin	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9	protein-coding	0.010000	0.527363	41(CCCCATTAAGGG,-,0.00)
mm_90255.1	chr10	122386910	122387110	+	1	NA	NA	NA	-61489	NM_016847	54140	Mm.4351	NM_016847	ENSMUSG00000020123	Avpr1a	AVPR|Avpr1|V1a|V1aR	arginine vasopressin receptor 1A	protein-coding	0.010000	0.512438	
mm_80294.1	chr9	73096513	73096713	+	1	NA	NA	NA	-5785	NM_025890	66991	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	0.000000	0.422886	
mm_4013.1	chr1	165461156	165461356	+	1	NA	NA	NA	48	NM_027430	70456	Mm.195625	NM_027430	ENSMUSG00000026568	Mpc2	0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43	mitochondrial pyruvate carrier 2	protein-coding	0.090000	0.706468	
mm_164486.1	chr16	76132362	76132562	+	1	NA	NA	NA	9849	NR_040575	78215	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.005000	0.557214	
mm_12563.1	chr2	72609021	72609221	+	1	NA	NA	NA	-94389	NR_040503	74541	Mm.410774	NR_040503	ENSMUSG00000085252	8430437L04Rik	-	RIKEN cDNA 8430437L04 gene	ncRNA	0.000000	0.268657	
mm_25263.1	chr3	104788717	104788917	+	1	NA	NA	NA	-217	NM_001291859	11853	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0.070000	0.691542	
mm_147673.1	chr18	60648836	60649036	-	1	NA	NA	NA	-14474	NR_045401	328963	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.005000	0.597015	
mm_17683.1	chr2	32312082	32312282	-	1	NA	NA	NA	-6083	NR_128563	104795665		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	0.085000	0.781095	
mm_75423.1	chr8	46868224	46868424	-	1	NA	NA	NA	-118563	NM_177304	320981	Mm.211429	NM_177304	ENSMUSG00000038173	Enpp6	4833421B01Rik|B830047L21Rik|D8Ertd514e|E-NPP 6|GPC-Cpde|Npp6	ectonucleotide pyrophosphatase/phosphodiesterase 6	protein-coding	0.010000	0.412935	
mm_89799.1	chr10	102512302	102512502	+	1	NA	NA	NA	180	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding	0.005000	0.512438	16(GAGTTGAAAAGG,-,0.00)
mm_153521.1	chr19	41747480	41747680	-	1	NA	NA	NA	619	NR_040320	100502871	Mm.394485	NR_040320		Gm19424	-	predicted gene, 19424	ncRNA	0.045000	0.572139	
mm_61738.1	chr7	82174773	82174973	+	1	NA	NA	NA	-85035	NM_001277955	20408	Mm.736	NM_017400	ENSMUSG00000030638	Sh3gl3	EEN-B2|SH3P13|Sh3d2c|Sh3d2c2	SH3-domain GRB2-like 3	protein-coding	0.155000	0.781095	
mm_144900.1	chr18	37300723	37300923	+	1	NA	NA	NA	24	NM_053128	93874	Mm.82308	NM_053128	ENSMUSG00000045498	Pcdhb3	PcdhbC	protocadherin beta 3	protein-coding	0.025000	0.412935	
mm_86299.1	chr9	122310803	122311003	-	1	NA	NA	NA	-16480	NM_133979	102566	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	0.050000	0.592040	
mm_152479.1	chr19	11047809	11048009	-	1	NA	NA	NA	2657	NR_102366	107350	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.005000	0.417910	
mm_43659.1	chr5	138707471	138707671	+	1	NA	NA	NA	-47510	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.000000	0.482587	
mm_72115.1	chr8	71676144	71676344	+	1	NA	NA	NA	-139	NM_001190830	16453	Mm.249645	NM_010589	ENSMUSG00000031805	Jak3	fae|wil	Janus kinase 3	protein-coding	0.040000	0.517413	
mm_87474.1	chr10	51491959	51492159	+	1	NA	NA	NA	1161	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.462687	
mm_9030.1	chr1	166503775	166503975	-	1	NA	NA	NA	-6287	NM_001164306	226601	Mm.475593	NM_001164306	ENSMUSG00000086056	Gm4846	EG226601|Fmo13	predicted gene 4846	protein-coding	0.005000	0.467662	-33(GCTTATAAAAGA,-,0.00),53(GCATATAAAGGA,+,0.00)
mm_108487.1	chr12	83668040	83668240	+	1	NA	NA	NA	-20423	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.055000	0.427861	
mm_55996.1	chr6	86388606	86388806	-	1	NA	NA	NA	8444	NM_025823	66881	Mm.30849	NM_025823	ENSMUSG00000029998	Pcyox1	1200015P13Rik|AI115532|AI448340|PCL1|Pcly	prenylcysteine oxidase 1	protein-coding	0.050000	0.547264	
mm_8365.1	chr1	150466114	150466314	-	1	NA	NA	NA	-49	NM_001110146	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.010000	0.398010	14(TGCTATATAAGA,-,0.00)
mm_132350.1	chr16	33984935	33985135	+	1	NA	NA	NA	-18032	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.015000	0.447761	
mm_165475.1	chr2	164316595	164316795	+	1	NA	NA	NA	-56	NM_013679	20945	Mm.439686	NM_013679	ENSMUSG00000017000	Svs6	MSVSP99|Svp6	seminal vesicle secretory protein 6	protein-coding	0.000000	0.492537	
mm_67374.1	chr7	79841853	79842053	-	1	NA	NA	NA	399	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.020000	0.497512	
mm_20734.1	chr2	137095470	137095670	-	1	NA	NA	NA	20950	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.005000	0.417910	
mm_39758.1	chr5	29736026	29736226	+	1	NA	NA	NA	-190	NR_028426	332993	Mm.473746	NR_028426		Gm5129	EG332993|ENSMUSG00000053121	predicted gene 5129	ncRNA	0.125000	0.716418	
mm_126088.1	chr15	77881889	77882089	+	1	NA	NA	NA	-39814	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.015000	0.502488	-72(GCTTTAATAAGG,+,0.00)
mm_105992.1	chr11	115628142	115628342	-	1	NA	NA	NA	53	NM_001252394	67283	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.050000	0.572139	
mm_16287.1	chr2	174110962	174111162	+	1	NA	NA	NA	711	NM_213733	228961	Mm.295629	NM_213733	ENSMUSG00000039263	Npepl1	BC023239|C85514|mKIAA1974	aminopeptidase-like 1	protein-coding	0.045000	0.616915	
mm_62584.1	chr7	105554333	105554533	+	1	NA	NA	NA	73	NM_011421	20597	Mm.4628	NM_011421	ENSMUSG00000037049	Smpd1	A-SMase|ASM|Zn-SMase|aSMase	sphingomyelin phosphodiesterase 1, acid lysosomal	protein-coding	0.035000	0.626866	-77(GGCCATAAGAGG,-,0.00)
mm_21784.1	chr2	164854312	164854512	-	1	NA	NA	NA	3296	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.030000	0.507463	
mm_36742.1	chr4	99829279	99829479	-	1	NA	NA	NA	-121	NM_145549	230500	Mm.331727	NM_145549	ENSMUSG00000073791	Efcab7	mKIAA1799	EF-hand calcium binding domain 7	protein-coding	0.060000	0.552239	
mm_74655.1	chr8	13494413	13494613	-	1	NA	NA	NA	22	NM_019521	14456	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0.115000	0.741294	
mm_69493.1	chr7	134224916	134225116	-	1	NA	NA	NA	81	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.120000	0.661692	
mm_149850.1	chr19	25057110	25057310	+	1	NA	NA	NA	57681	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.005000	0.562189	
mm_15931.1	chr2	165503804	165504004	+	1	NA	NA	NA	7	NM_130451	170441	Mm.34147	NM_130451	ENSMUSG00000027661	Slc2a10	AA450473|Glut10	solute carrier family 2 (facilitated glucose transporter), member 10	protein-coding	0.070000	0.666667	
mm_134804.1	chr16	24393338	24393538	-	1	NA	NA	NA	88	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.050000	0.626866	
mm_113386.1	chr13	33039735	33039935	+	1	NA	NA	NA	12421	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	0.010000	0.517413	
mm_33063.1	chr4	123233756	123233956	+	1	NA	NA	NA	300	NM_013905	56198	Mm.103615	NM_013905	ENSMUSG00000032744	Heyl	Hey3|Hrt3|bHLHb33|hesr3	hairy/enhancer-of-split related with YRPW motif-like	protein-coding	0.085000	0.686567	
mm_160738.1	chr10	79688778	79688978	+	1	NA	NA	NA	-142	NM_001302485	16904	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	0.005000	0.457711	
mm_29331.1	chr3	108086549	108086749	-	1	NA	NA	NA	17	NM_028779	109674	Mm.274335	NM_028779	ENSMUSG00000027889	Ampd2	1200014F01Rik|AI552571|Ampd-2|m4521Dajl	adenosine monophosphate deaminase 2	protein-coding	0.105000	0.681592	
mm_7293.1	chr1	97822907	97823107	-	1	NA	NA	NA	52835	NM_026250	252876	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding	0.030000	0.323383	
mm_147166.1	chr18	36726190	36726390	-	1	NA	NA	NA	525	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.060000	0.572139	
mm_27075.1	chr3	28805244	28805444	-	1	NA	NA	NA	-167	NM_001347226	68028	Mm.371630	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0.070000	0.577114	
mm_124919.1	chr15	12117730	12117930	+	1	NA	NA	NA	-21	NM_011767	22763	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.085000	0.681592	
mm_164649.1	chr17	35567313	35567513	+	1	NA	NA	NA	-72	NM_175148	69542	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	0.010000	0.532338	
mm_35032.1	chr4	4077425	4077625	-	1	NA	NA	NA	-11	NM_001080710	242286	Mm.298546	NM_001080710	ENSMUSG00000071019	Sdr16c6	4833413O15Rik|Gm423	short chain dehydrogenase/reductase family 16C, member 6	protein-coding	0.015000	0.512438	
mm_29978.1	chr3	133791398	133791598	-	1	NA	NA	NA	-247108	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.000000	0.368159	
mm_133693.1	chr16	92612666	92612866	+	1	NA	NA	NA	84563	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.030000	0.537313	78(GCCTCTAAAGGA,-,0.00),79(CCTCTAAAGGAC,+,0.00)
mm_80909.1	chr9	100643516	100643716	+	1	NA	NA	NA	-7	NM_009282	20842	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	0.100000	0.701493	
mm_71570.1	chr8	54077150	54077350	+	1	NA	NA	NA	-282	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding	0.175000	0.840796	
mm_31578.1	chr4	57734627	57734827	+	1	NA	NA	NA	-110521	NM_009649	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.005000	0.378109	33(GTATTTATAGAG,+,0.00)
mm_105659.1	chr11	107337750	107337950	-	1	NA	NA	NA	132870	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.020000	0.482587	19(CCTTAAAGACCG,+,0.00)
mm_90081.1	chr10	116581465	116581665	+	1	NA	NA	NA	-54	NM_001037846	72068	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.155000	0.706468	
mm_3066.1	chr1	134183246	134183446	+	1	NA	NA	NA	942	NM_007695	12654	Mm.38274	NM_007695	ENSMUSG00000064246	Chil1	AW208766|Brp39|Chi3l1|Gp39	chitinase-like 1	protein-coding	0.020000	0.557214	
mm_68583.1	chr7	116030886	116031086	-	1	NA	NA	NA	61	NM_001025560	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.045000	0.636816	
mm_6025.1	chr1	59161511	59161711	-	1	NA	NA	NA	25	NM_145143	227157	Mm.474049	NM_145143	ENSMUSG00000079550	Mpp4	Dlg6	membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)	protein-coding	0.010000	0.542289	
mm_159468.1	chr4	9844308	9844508	+	1	NA	NA	NA	36	NM_013526	242316	Mm.302555	NM_013526	ENSMUSG00000051279	Gdf6	BMP-13|BMP13|GDF16	growth differentiation factor 6	protein-coding	0.110000	0.701493	
mm_65122.1	chr7	19414937	19415137	-	1	NA	NA	NA	3943	NM_007710	12715	Mm.2375	NM_007710	ENSMUSG00000030399	Ckm	Ckmm|M-CK|MCK	creatine kinase, muscle	protein-coding	0.035000	0.567164	
mm_112945.1	chr13	21001633	21001833	+	1	NA	NA	NA	71566	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.015000	0.422886	
mm_128442.1	chr15	50731332	50731532	-	1	NA	NA	NA	157617	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.318408	
mm_107130.1	chr12	21212950	21213150	+	1	NA	NA	NA	73187	NM_008403	16413	Mm.273333	NM_008403	ENSMUSG00000062352	Itgb1bp1	AI449260|AU019480|Icap1	integrin beta 1 binding protein 1	protein-coding	0.060000	0.547264	
mm_22651.1	chr3	14869962	14870162	+	1	NA	NA	NA	6524	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.040000	0.587065	
mm_23804.1	chr3	79884957	79885157	+	1	NA	NA	NA	-873	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.035000	0.398010	-59(ATCTTTAAAAAG,-,0.00),22(CAGCTTTTAAGG,-,0.00),23(AGCTTTTAAGGC,-,0.00),24(GCTTTTAAGGCT,+,0.00)
mm_110839.1	chr12	72938768	72938968	-	1	NA	NA	NA	-1014	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	0.020000	0.407960	
mm_5235.1	chr1	14755891	14756091	-	1	NA	NA	NA	-25	NM_010827	17681	Mm.5820	NM_010827	ENSMUSG00000025930	Msc	MyoR|bHLHa22	musculin	protein-coding	0.035000	0.592040	-92(CCCTTTCAAGCC,+,0.00)
mm_155150.1	chrX	52792959	52793159	+	1	NA	NA	NA	1859	NM_001034059	434778	Mm.23411	NM_001034059	ENSMUSG00000073207	Ccdc160	6330534C20Rik	coiled-coil domain containing 160	protein-coding	0.020000	0.507463	
mm_77399.1	chr8	120489238	120489438	-	1	NA	NA	NA	472	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.160000	0.771144	
mm_157734.1	chrX	71492525	71492725	-	1	NA	NA	NA	224	NM_138309	171486	Mm.283879	NM_138309	ENSMUSG00000035776	Cd99l2	AW548191|Mic2l1|Xap89	CD99 antigen-like 2	protein-coding	0.050000	0.676617	
mm_34364.1	chr4	144892757	144892957	+	1	NA	NA	NA	30	NM_001172424	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.040000	0.512438	
mm_121532.1	chr14	122280625	122280825	+	1	NA	NA	NA	-47087	NR_015532	68245	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.040000	0.527363	
mm_39006.1	chr4	152027513	152027713	-	1	NA	NA	NA	58	NM_133879	100090	Mm.24661	NM_133879	ENSMUSG00000028952	Zbtb48	0610011D15Rik|AI327031|Hkr3	zinc finger and BTB domain containing 48	protein-coding	0.110000	0.696517	
mm_738.1	chr1	43450981	43451181	+	1	NA	NA	NA	5330	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.005000	0.497512	
mm_70099.1	chr7	142660951	142661151	-	1	NA	NA	NA	220	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.060000	0.631841	
mm_16751.1	chr2	9863215	9863415	-	1	NA	NA	NA	15285	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.010000	0.402985	
mm_156154.1	chrX	129954918	129955118	+	1	NA	NA	NA	205276	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.000000	0.313433	
mm_71318.1	chr8	44935189	44935389	+	1	NA	NA	NA	-14919	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.065000	0.656716	
mm_10379.1	chr2	12300583	12300783	+	1	NA	NA	NA	-563	NR_040353	338535	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.015000	0.527363	
mm_105950.1	chr11	115297399	115297599	-	1	NA	NA	NA	47	NM_178035	328035	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804|OTTMUSG00000021749	fatty acid desaturase domain family, member 6	protein-coding	0.100000	0.686567	
mm_84436.1	chr9	66093483	66093683	-	1	NA	NA	NA	-23852	NM_001025612	382083	Mm.477103	NM_001025612	ENSMUSG00000039452	Snx22	Gm1120	sorting nexin 22	protein-coding	0.015000	0.537313	
mm_114443.1	chr13	66488115	66488315	+	1	NA	NA	NA	-47097	NM_001290196	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.025000	0.527363	
mm_27475.1	chr3	53463116	53463316	-	1	NA	NA	NA	42	NM_172501	212114	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0.095000	0.671642	
mm_77700.1	chr8	126589981	126590181	-	1	NA	NA	NA	3355	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.025000	0.542289	
mm_13191.1	chr2	93198436	93198636	+	1	NA	NA	NA	10952	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.015000	0.587065	
mm_49066.1	chr6	5398305	5398505	+	1	NA	NA	NA	15019	NM_023048	65255	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0.045000	0.567164	
mm_83637.1	chr9	49490247	49490447	-	1	NA	NA	NA	-4122	NM_172770	235330	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	0.050000	0.477612	80(AAGTATAAAGGG,-,0.00)
mm_1110.1	chr1	59815879	59816079	+	1	NA	NA	NA	51700	NM_007561	12168	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0.000000	0.472637	
mm_62688.1	chr7	110044023	110044223	+	1	NA	NA	NA	-2241	NR_033336	100379145	Mm.484711	NR_033336	ENSMUSG00000064451	Snora23	MBI-1	small nucleolar RNA, H/ACA box 23	snoRNA	0.005000	0.363184	
mm_48026.1	chr5	136245157	136245357	-	1	NA	NA	NA	-317	NM_018825	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.060000	0.621891	-34(ACATTTATAGGG,+,0.00)
mm_129345.1	chr15	77857659	77857859	-	1	NA	NA	NA	-15584	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.065000	0.621891	
mm_152144.1	chr19	7199894	7200094	-	1	NA	NA	NA	6290	NM_134150	107260	Mm.203921	NM_134150	ENSMUSG00000024767	Otub1	AI850305	OTU domain, ubiquitin aldehyde binding 1	protein-coding	0.030000	0.552239	
mm_34368.1	chr4	144893039	144893239	+	1	NA	NA	NA	2	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.045000	0.497512	
mm_123592.1	chr14	67695521	67695721	-	1	NA	NA	NA	19989	NM_001110162	108912	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	0.010000	0.333333	
mm_22284.1	chr2	180104371	180104571	-	1	NA	NA	NA	-64	NM_133849	99296	Mm.285360	NM_133849	ENSMUSG00000039059	Hrh3	AW049250|H3R|HH3R	histamine receptor H3	protein-coding	0.165000	0.810945	
mm_77962.1	chr9	7699410	7699610	+	1	NA	NA	NA	-3879	NR_126562	102722	Mm.334941	NR_126562	ENSMUSG00000086381	AV064505	-	expressed sequence AV064505	ncRNA	0.015000	0.462687	
mm_133925.1	chr16	3633073	3633273	-	1	NA	NA	NA	40775	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.040000	0.542289	
mm_95603.1	chr11	53351770	53351970	+	1	NA	NA	NA	1103	NM_033565	93736	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.025000	0.512438	
mm_125410.1	chr15	41751596	41751796	+	1	NA	NA	NA	-37338	NM_001130165	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.025000	0.517413	
mm_120141.1	chr14	60377625	60377825	+	1	NA	NA	NA	-561	NM_028113	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.030000	0.492537	
mm_1838.1	chr1	82839384	82839584	+	1	NA	NA	NA	24	NM_001347077	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.115000	0.746269	
mm_35235.1	chr4	19837848	19838048	-	1	NA	NA	NA	19221	NM_028746	74087	Mm.173833	NM_028746	ENSMUSG00000041052	Slc7a13	0610009O04Rik|AGT-1|AGT1|XAT2	solute carrier family 7, (cationic amino acid transporter, y+ system) member 13	protein-coding	0.000000	0.363184	63(CCTTATTAAAGG,-,0.00)
mm_79982.1	chr9	66946310	66946510	+	1	NA	NA	NA	334	NM_026467	67941	Mm.30120	NM_026467	ENSMUSG00000036781	Rps27l	1810034D23Rik	ribosomal protein S27-like	protein-coding	0.095000	0.711443	
mm_34612.1	chr4	150293908	150294108	+	1	NA	NA	NA	12092	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.000000	0.333333	-34(AGATTTAAAAGG,-,0.00)
mm_18483.1	chr2	62596038	62596238	-	1	NA	NA	NA	-22117	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.005000	0.298507	80(GAATATAAATGG,-,0.00)
mm_97939.1	chr11	83662439	83662639	+	1	NA	NA	NA	-45	NM_013652	20303	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.015000	0.517413	13(GTCCCTATAAAG,-,0.00),15(CCCTATAAAGAG,+,0.00),15(CCCTATAAAGAG,-,0.00)
mm_118455.1	chr14	8368177	8368377	+	1	NA	NA	NA	10486	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.010000	0.502488	
mm_170001.1	chr1	71651970	71652170	-	1	NA	NA	NA	1164	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.000000	0.422886	
mm_18889.1	chr2	76709606	76709806	-	1	NA	NA	NA	34391	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.035000	0.462687	
mm_6915.1	chr1	84839432	84839632	-	1	NA	NA	NA	-228	NM_133975	14897	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.075000	0.661692	
mm_146840.1	chr18	23038567	23038767	-	1	NA	NA	NA	-4	NM_001161483	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding	0.015000	0.502488	
mm_32108.1	chr4	98923568	98923768	+	1	NA	NA	NA	-142	NM_001301414	230484	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	0.105000	0.567164	-91(ATGTTTAAAAAG,-,0.00)
mm_23476.1	chr3	60480913	60481113	+	1	NA	NA	NA	8183	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.402985	
mm_88409.1	chr10	77032143	77032343	+	1	NA	NA	NA	-496	NM_001199271	20509	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.020000	0.597015	
mm_30996.1	chr4	40142994	40143194	+	1	NA	NA	NA	-171	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.045000	0.646766	
mm_81224.1	chr9	107614566	107614766	+	1	NA	NA	NA	-5425	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.025000	0.502488	
mm_156435.1	chrX	141980193	141980393	+	1	NA	NA	NA	216643	NM_001007576	245650	Mm.208511	NM_001007576	ENSMUSG00000042282	Gucy2f	A930002I06|GC-F|GC2	guanylate cyclase 2f	protein-coding	0.005000	0.432836	
mm_93299.1	chr10	96621167	96621367	-	1	NA	NA	NA	4266	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.010000	0.427861	
mm_120729.1	chr14	73142959	73143159	+	1	NA	NA	NA	274	NR_033185	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.070000	0.691542	
mm_152032.1	chr19	6084807	6085007	-	1	NA	NA	NA	-16	NM_024231	81909	Mm.289471	NM_024231	ENSMUSG00000024792	Zfpl1	1500015B20Rik	zinc finger like protein 1	protein-coding	0.105000	0.626866	
mm_45482.1	chr5	70842281	70842481	-	1	NA	NA	NA	236	NM_010252	14405	Mm.255292	NM_010252	ENSMUSG00000001260	Gabrg1	GabaA|GabaA/BZ	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 1	protein-coding	0.035000	0.522388	
mm_11693.1	chr2	35691823	35692023	+	1	NA	NA	NA	-71	NM_001001602	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.025000	0.636816	
mm_40747.1	chr5	66745403	66745603	+	1	NA	NA	NA	-337	NM_001001980	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.035000	0.611940	
mm_15158.1	chr2	154009091	154009291	+	1	NA	NA	NA	915	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.005000	0.447761	
mm_144864.1	chr18	36725711	36725911	+	1	NA	NA	NA	1004	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.050000	0.557214	
mm_12708.1	chr2	76675206	76675406	+	1	NA	NA	NA	-9	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.125000	0.736318	
mm_92710.1	chr10	80757038	80757238	-	1	NA	NA	NA	1932	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.010000	0.522388	
mm_118579.1	chr14	19763659	19763859	+	1	NA	NA	NA	12502	NM_008695	18074	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.035000	0.547264	
mm_47919.1	chr5	135001225	135001425	-	1	NA	NA	NA	25	NR_026907	71304	Mm.482317	NR_026907	ENSMUSG00000054909	Wbscr25	4933433J03Rik|4933439O14Rik	Williams Beuren syndrome chromosome region 25 (human)	ncRNA	0.030000	0.651741	
mm_145099.1	chr18	43764225	43764425	+	1	NA	NA	NA	24	NM_001289644	117158	Mm.210437	NM_054038	ENSMUSG00000038791	Scgb3a2	LuLeu1|Pnsp1|UGRP1|Utgrp1	secretoglobin, family 3A, member 2	protein-coding	0.015000	0.472637	
mm_152593.1	chr19	11623594	11623794	-	1	NA	NA	NA	25	NM_001276330	14126	Mm.329735	NM_013516	ENSMUSG00000024680	Ms4a2	FcRB|Fce1b|Fcer1b|Fcrbeta|Ms4a1|fcERI	membrane-spanning 4-domains, subfamily A, member 2	protein-coding	0.010000	0.422886	
mm_113900.1	chr13	49213796	49213996	+	1	NA	NA	NA	2130	NM_026738	68480	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.010000	0.527363	-34(GCTTTTATAAGC,+,0.00),-34(GCTTTTATAAGC,-,0.00)
mm_163016.1	chr11	46055857	46056057	+	1	NA	NA	NA	-27	NM_009616	11492	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.070000	0.696517	53(GCTTTTAGGCCG,+,0.00)
mm_56877.1	chr6	118968257	118968457	-	1	NA	NA	NA	88199	NR_046053	74363	Mm.399403	NR_046053		4931430N09Rik	-	RIKEN cDNA 4931430N09 gene	ncRNA	0.005000	0.422886	
mm_101363.1	chr11	23741785	23741985	-	1	NA	NA	NA	29085	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.000000	0.308458	
mm_93571.1	chr10	116564897	116565097	-	1	NA	NA	NA	16514	NM_001037848	72068	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.030000	0.432836	
mm_20122.1	chr2	121241733	121241933	-	1	NA	NA	NA	29574	NM_001290830	27223	Mm.215389	NM_013735	ENSMUSG00000043909	Trp53bp1	53BP1|Tp53bp1|m53BP1|p53BP1	transformation related protein 53 binding protein 1	protein-coding	0.005000	0.373134	
mm_16736.1	chr2	9178621	9178821	-	1	NA	NA	NA	-10794	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.000000	0.383085	
mm_4168.1	chr1	171113913	171114113	+	1	NA	NA	NA	-7648	NM_001081275	75472	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.080000	0.631841	
mm_69820.1	chr7	141265366	141265566	-	1	NA	NA	NA	958	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.050000	0.606965	
mm_103126.1	chr11	70220713	70220913	-	1	NA	NA	NA	181	NM_172371	69309	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	0.045000	0.592040	-51(CGGTTTATAGGG,-,0.00),-49(GTTTATAGGGCC,+,0.00)
mm_17343.1	chr2	26604114	26604314	-	1	NA	NA	NA	203	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.105000	0.731343	
mm_23480.1	chr3	60487622	60487822	+	1	NA	NA	NA	-13457	NM_001253711	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.477612	
mm_61072.1	chr7	51596215	51596415	+	1	NA	NA	NA	-25515	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.010000	0.402985	
mm_172584.1	chr8	123172740	123172940	+	1	NA	NA	NA	-13395	NM_007876	13479	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	0.035000	0.522388	-25(GGGTATTTAAGG,-,0.00)
mm_72249.1	chr8	75067406	75067606	+	1	NA	NA	NA	-26112	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.020000	0.567164	
mm_1616.1	chr1	74391486	74391686	+	1	NA	NA	NA	-23	NM_153088	227292	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.105000	0.686567	44(GCCCTTTTAAGG,-,0.00),45(CCCTTTTAAGGG,-,0.00),46(CCTTTTAAGGGG,+,0.00)
mm_61963.1	chr7	90386897	90387097	+	1	NA	NA	NA	16	NM_001040088	83671	Mm.26751	NM_031394	ENSMUSG00000030616	Sytl2	AI266830|Slp2|mKIAA1597	synaptotagmin-like 2	protein-coding	0.010000	0.472637	
mm_88026.1	chr10	67220016	67220216	+	1	NA	NA	NA	34366	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.005000	0.427861	
mm_74126.1	chr8	123186177	123186377	+	1	NA	NA	NA	42	NM_007876	13479	Mm.20388	NM_007876	ENSMUSG00000019278	Dpep1	AI327012|MBD	dipeptidase 1 (renal)	protein-coding	0.045000	0.592040	46(CCCTTTTAAAGA,-,0.00),47(CCTTTTAAAGAG,+,0.00)
mm_54768.1	chr6	41445974	41446174	-	1	NA	NA	NA	23	NM_001103153	100040233	Mm.297485	NM_001103153	ENSMUSG00000071517	Gm10334	ENSMUSG00000071517	predicted gene 10334	protein-coding	0.005000	0.452736	
mm_154406.1	chrM	14472	14672	+	1	NA	NA	NA	NA	NA									0.015000	0.437811	-49(GCATTTATAGGC,+,0.00)
mm_3679.1	chr1	153695270	153695470	+	1	NA	NA	NA	29697	NM_001347115	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding	0.010000	0.452736	14(CCTCTTAAGCAC,+,0.00)
mm_118204.1	chr13	108310884	108311084	-	1	NA	NA	NA	-5353	NM_178683	218581	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.040000	0.567164	
mm_84443.1	chr9	66124778	66124978	-	1	NA	NA	NA	8	NM_019727	56440	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	0.065000	0.651741	67(CTGTCTATAAAG,-,0.00)
mm_153306.1	chr19	38022671	38022871	-	1	NA	NA	NA	20806	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.005000	0.422886	
mm_44490.1	chr5	23675726	23675926	-	1	NA	NA	NA	36841	NR_038090	433855	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	0.125000	0.706468	
mm_41803.1	chr5	103753884	103754084	+	1	NA	NA	NA	-178	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.140000	0.786070	
mm_162628.1	chr1	185283192	185283392	+	1	NA	NA	NA	-30027	NR_029580	387189		NR_029580	ENSMUSG00000065581	Mir194-1	Mirn194|Mirn194-1|miR-194|mir-194-1	microRNA 194-1	ncRNA	0.015000	0.393035	
mm_18223.1	chr2	51130762	51130962	-	1	NA	NA	NA	18249	NM_028810	74194	Mm.46497	NM_028810	ENSMUSG00000017144	Rnd3	2610017M01Rik|AI661404|Arhe|Rhoe	Rho family GTPase 3	protein-coding	0.030000	0.427861	
mm_77180.1	chr8	111721001	111721201	-	1	NA	NA	NA	11035	NM_001198839	12927	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0.025000	0.631841	
mm_145191.1	chr18	49832595	49832795	+	1	NA	NA	NA	-302	NM_001081371	240283	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0.125000	0.726368	
mm_48720.1	chr5	147322299	147322499	-	1	NA	NA	NA	41	NM_001039678	231903	Mm.291286	NM_001039678	ENSMUSG00000075543	Urad	EG231903|Prhoxnb	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase	protein-coding	0.015000	0.537313	
mm_57035.1	chr6	122339008	122339208	-	1	NA	NA	NA	549	NM_001042623	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.030000	0.467662	
mm_64629.1	chr7	3692869	3693069	-	1	NA	NA	NA	556	NM_029934	77582	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	0.075000	0.616915	
mm_72955.1	chr8	92358218	92358418	+	1	NA	NA	NA	522	NM_018826	54352	Mm.101153	NM_018826	ENSMUSG00000031737	Irx5	-	Iroquois related homeobox 5 (Drosophila)	protein-coding	0.140000	0.716418	
mm_72650.1	chr8	84803601	84803801	+	1	NA	NA	NA	-3363	NM_001081982	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.010000	0.512438	
mm_151004.1	chr19	46654732	46654932	+	1	NA	NA	NA	18168	NM_007809	13074	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.020000	0.522388	
mm_55588.1	chr6	71440445	71440645	-	1	NA	NA	NA	92	NM_024288	68477	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.140000	0.721393	
mm_29278.1	chr3	107631593	107631793	-	1	NA	NA	NA	17	NM_153563	229707	Mm.278643	NM_153563	ENSMUSG00000014601	Strip1	6330569M22Rik|6530401O14Rik|Fam40a	striatin interacting protein 1	protein-coding	0.095000	0.651741	
mm_71565.1	chr8	53511727	53511927	+	1	NA	NA	NA	125	NM_001005847	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.075000	0.631841	78(GGCCTTTTAAGA,-,0.00)
mm_146911.1	chr18	31439586	31439786	-	1	NA	NA	NA	7729	NM_009308	20983	Mm.233846	NM_009308	ENSMUSG00000024261	Syt4	SytIV	synaptotagmin IV	protein-coding	0.005000	0.298507	
mm_23601.1	chr3	65109282	65109482	+	1	NA	NA	NA	14	NM_010597	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.025000	0.587065	
mm_121801.1	chr14	20145783	20145983	-	1	NA	NA	NA	35899	NM_021542	16529	Mm.68998	NM_021542	ENSMUSG00000023243	Kcnk5	KCNK5b|TASK-2	potassium channel, subfamily K, member 5	protein-coding	0.010000	0.517413	
mm_161446.1	chr15	73839327	73839527	-	1	NA	NA	NA	244	NM_001033365	268816	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding	0.135000	0.746269	
mm_86481.1	chr10	4819389	4819589	+	1	NA	NA	NA	109331	NM_001302533	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.000000	0.363184	-71(GGTCATAAAAGG,-,0.00),36(TCCCATTAAAGG,-,0.00)
mm_58888.1	chr7	17090355	17090555	+	1	NA	NA	NA	16415	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.005000	0.447761	
mm_2480.1	chr1	105846914	105847114	+	1	NA	NA	NA	66291	NM_009399	21934	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.010000	0.358209	
mm_28138.1	chr3	87249566	87249766	-	1	NA	NA	NA	13858	NM_030707	80891	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	0.020000	0.477612	
mm_172389.1	chr7	136810715	136810915	+	1	NA	NA	NA	-83796	NM_008598	17314	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding	0.015000	0.507463	
mm_55528.1	chr6	70726552	70726752	-	1	NA	NA	NA	65523	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.025000	0.482587	
mm_23016.1	chr3	34560273	34560473	+	1	NA	NA	NA	-8	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA	0.010000	0.467662	
mm_53035.1	chr6	124555921	124556121	+	1	NA	NA	NA	-13662	NM_001097617	50908	Mm.219527	NM_144938	ENSMUSG00000038521	C1s1	AA959438|AI255193|AI327365|C1s|C1sa	complement component 1, s subcomponent 1	protein-coding	0.005000	0.398010	
mm_142642.1	chr17	47433344	47433544	-	1	NA	NA	NA	-3195	NM_145489	224833	Mm.218444	NM_145489	ENSMUSG00000034382	AI661453	-	expressed sequence AI661453	protein-coding	0.025000	0.507463	
mm_154295.1	chr19	61198675	61198875	-	1	NA	NA	NA	-22466	NM_001177513	633057	Mm.426097	NM_001177513	ENSMUSG00000094649	Gm7102	EG633057	predicted gene 7102	protein-coding	0.065000	0.616915	
mm_113445.1	chr13	35659763	35659963	+	1	NA	NA	NA	1	NM_009881	12593	Mm.29002	NM_009881	ENSMUSG00000059288	Cdyl	AI325931	chromodomain protein, Y chromosome-like	protein-coding	0.005000	0.502488	-61(CCTTTTATGAGG,+,0.00)
mm_87026.1	chr10	28277177	28277377	+	1	NA	NA	NA	202457	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0.000000	0.358209	
mm_157060.1	chrX	8132447	8132647	-	1	NA	NA	NA	311	NM_001290783	73447	Mm.284162	NM_026137	ENSMUSG00000031166	Wdr13	1700060B08Rik|5730411P10Rik|DXHXS7467e|W51679|mMg21	WD repeat domain 13	protein-coding	0.045000	0.601990	
mm_41045.1	chr5	86093135	86093335	+	1	NA	NA	NA	21489	NM_001310639	56792	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.005000	0.303483	
mm_139933.1	chr17	71085274	71085474	+	1	NA	NA	NA	65817	NM_001083934	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.010000	0.378109	
mm_153081.1	chr19	32387784	32387984	-	1	NA	NA	NA	570	NM_144792	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.085000	0.701493	
mm_48779.1	chr5	148552162	148552362	-	1	NA	NA	NA	526	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.095000	0.651741	
mm_89732.1	chr10	98990405	98990605	+	1	NA	NA	NA	75353	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.010000	0.333333	-80(TCATTTATAGAC,+,0.00),82(GCTTTAAGACTC,+,0.00)
mm_89270.1	chr10	87860158	87860358	+	1	NA	NA	NA	-853	NM_001111274	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.055000	0.641791	
mm_45787.1	chr5	87379852	87380052	-	1	NA	NA	NA	-42757	NM_028094	72094	Mm.482739	NM_028094	ENSMUSG00000035780	Ugt2a3	2010321J07Rik	UDP glucuronosyltransferase 2 family, polypeptide A3	protein-coding	0.000000	0.388060	
mm_153839.1	chr19	46327038	46327238	-	1	NA	NA	NA	18	NM_028627	73728	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.120000	0.686567	
mm_152507.1	chr19	11232346	11232546	-	1	NA	NA	NA	33705	NM_007641	12482	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	0.015000	0.457711	-86(AACTATATAAAG,-,0.00)
mm_24459.1	chr3	90614277	90614477	+	1	NA	NA	NA	1483	NM_011313	20200	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0.020000	0.477612	
mm_25028.1	chr3	98147073	98147273	+	1	NA	NA	NA	-13461	NM_027665	71078	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.015000	0.597015	
mm_40288.1	chr5	43233637	43233837	+	1	NA	NA	NA	274	NM_001177379	231207	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.125000	0.751244	
mm_131641.1	chr16	20516791	20516991	+	1	NA	NA	NA	-95	NM_001347176	13544	Mm.247259	NM_007889	ENSMUSG00000003233	Dvl3	-	dishevelled segment polarity protein 3	protein-coding	0.105000	0.751244	
mm_154537.1	chrM	13880	14080	-	1	NA	NA	NA	NA	NA									0.005000	0.293532	-17(CTATTTATGGAG,+,0.00)
mm_83458.1	chr9	45259534	45259734	-	1	NA	NA	NA	7073	NR_106054	102466803		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.000000	0.298507	
mm_170834.1	chr2	177032569	177032769	+	1	NA	NA	NA	-104856	NM_001305133	102639598	Mm.379980	NM_029813	ENSMUSG00000074527	Gm14296	-	predicted gene 14296	protein-coding	0.010000	0.482587	
mm_77181.1	chr8	111726023	111726223	-	1	NA	NA	NA	6013	NM_001198839	12927	Mm.3758	NM_009954	ENSMUSG00000031955	Bcar1	AI385681|Cas|Crkas	breast cancer anti-estrogen resistance 1	protein-coding	0.005000	0.557214	
mm_18320.1	chr2	57114664	57114864	-	1	NA	NA	NA	274	NM_013613	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.130000	0.721393	
mm_144628.1	chr18	32938861	32939061	+	1	NA	NA	NA	-80	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.050000	0.606965	
mm_80983.1	chr9	103220818	103221018	+	1	NA	NA	NA	9368	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.015000	0.532338	
mm_144905.1	chr18	37341650	37341850	+	1	NA	NA	NA	48	NM_053132	93878	Mm.44755	NM_053132	ENSMUSG00000045062	Pcdhb7	Pcdhb4B|PcdhbG	protocadherin beta 7	protein-coding	0.030000	0.412935	
mm_11925.1	chr2	52073020	52073220	+	1	NA	NA	NA	283	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.130000	0.776119	
mm_44750.1	chr5	31254604	31254804	-	1	NA	NA	NA	2998	NM_027221	69815	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	0.025000	0.522388	23(CCTTTTATGAAG,+,0.00)
mm_70180.1	chr7	143756914	143757114	-	1	NA	NA	NA	9979	NM_203492	381974	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	0.045000	0.631841	
mm_126885.1	chr15	89454035	89454235	+	1	NA	NA	NA	224	NM_021921	60597	Mm.173337	NM_021921	ENSMUSG00000022619	Mapk8ip2	3230402N03Rik|AI847694|AW049958|IB2|Jip2|R75148	mitogen-activated protein kinase 8 interacting protein 2	protein-coding	0.125000	0.741294	
mm_62160.1	chr7	97177158	97177358	+	1	NA	NA	NA	95507	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.000000	0.368159	57(CCCTATATAAAA,-,0.00)
mm_57004.1	chr6	121044026	121044226	-	1	NA	NA	NA	-20338	NR_138098	100043793	Mm.448053	NR_138098		Gm4651	-	predicted gene 4651	ncRNA	0.015000	0.412935	68(CTTTTAATATCC,+,0.00)
mm_61159.1	chr7	58750928	58751128	+	1	NA	NA	NA	92826	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.000000	0.303483	
mm_137960.1	chr17	33139636	33139836	+	1	NA	NA	NA	-53	NM_177719	240069	Mm.157765	NM_177719	ENSMUSG00000048602	Morc2b	4932411A10Rik|Tce6	microrchidia 2B	protein-coding	0.055000	0.567164	
mm_11714.1	chr2	36237639	36237839	+	1	NA	NA	NA	7313	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.025000	0.552239	
mm_101969.1	chr11	50310322	50310522	-	1	NA	NA	NA	15251	NM_001110499	12330	Mm.248827	NM_007597	ENSMUSG00000020368	Canx	1110069N15Rik|AI988026|Cnx|D11Ertd153e	calnexin	protein-coding	0.000000	0.363184	
mm_28590.1	chr3	94417855	94418055	-	1	NA	NA	NA	4637	NM_028307	72634	Mm.331198	NM_028307	ENSMUSG00000041912	Tdrkh	2700091C21Rik|Tdrd2	tudor and KH domain containing protein	protein-coding	0.005000	0.328358	
mm_100553.1	chr11	120721956	120722156	+	1	NA	NA	NA	588	NM_133223	170758	Mm.34008	NM_133223	ENSMUSG00000018012	Rac3	Rac1B	RAS-related C3 botulinum substrate 3	protein-coding	0.060000	0.601990	
mm_166231.1	chr5	66719820	66720020	-	1	NA	NA	NA	-25920	NM_001001980	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.015000	0.487562	
mm_172652.1	chr8	35053322	35053522	-	1	NA	NA	NA	-87732	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.000000	0.348259	
mm_63583.1	chr7	128118097	128118297	+	1	NA	NA	NA	-11371	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.000000	0.373134	-16(GGATATTAAAGG,-,0.00)
mm_134821.1	chr16	25960298	25960498	-	1	NA	NA	NA	145386	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.015000	0.378109	
mm_129280.1	chr15	77153610	77153810	-	1	NA	NA	NA	102	NM_001110830	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.025000	0.567164	30(ACGTTTAAAGGG,-,0.00)
mm_110161.1	chr12	26834696	26834896	-	1	NA	NA	NA	280199	NR_045052	100504347	Mm.130500	NR_045052		Gm20187	-	predicted gene, 20187	ncRNA	0.015000	0.552239	-33(TCCTATAAAAGG,-,0.00)
mm_60672.1	chr7	45018001	45018201	+	1	NA	NA	NA	94	NM_009101	20130	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.115000	0.756219	
mm_23252.1	chr3	51228225	51228425	+	1	NA	NA	NA	3878	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.010000	0.467662	
mm_169782.1	chr16	11144153	11144353	+	1	NA	NA	NA	-9721	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.100000	0.577114	
mm_151235.1	chr19	53793270	53793470	+	1	NA	NA	NA	-98861	NM_011050	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.040000	0.532338	
mm_69537.1	chr7	135695019	135695219	-	1	NA	NA	NA	21260	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.005000	0.482587	
mm_110901.1	chr12	75716318	75716518	-	1	NA	NA	NA	19311	NM_030750	81535	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.025000	0.517413	
mm_149055.1	chr19	8839222	8839422	+	1	NA	NA	NA	-6	NM_008144	14705	Mm.345134	NM_008144	ENSMUSG00000071657	Bscl2	2900097C17Rik|AI046355|Gng3lg	Berardinelli-Seip congenital lipodystrophy 2 (seipin)	protein-coding	0.005000	0.557214	
mm_83639.1	chr9	49503969	49504169	-	1	NA	NA	NA	-14219	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.015000	0.353234	52(TCCTTTAGAGCC,+,0.00)
mm_127986.1	chr15	12549191	12549391	-	1	NA	NA	NA	43265	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.030000	0.537313	
mm_61027.1	chr7	49522634	49522834	+	1	NA	NA	NA	114101	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.040000	0.557214	-33(GCACTTTAAAGG,-,0.00)
mm_154207.1	chr19	59075488	59075688	-	1	NA	NA	NA	481	NM_175172	71653	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Kiaa1598|Shootin1|mKIAA1598	shootin 1	protein-coding	0.095000	0.671642	48(CCTTTTATCCCC,+,0.00)
mm_170185.1	chr17	6132509	6132709	-	1	NA	NA	NA	-5539	NM_054040	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.030000	0.457711	-43(TACTTTATAGGC,-,0.00),-25(CCATTTATAAAC,+,0.00)
mm_157208.1	chrX	12761862	12762062	-	1	NA	NA	NA	11	NM_012005	26896	Mm.17616	NM_012005	ENSMUSG00000064127	Med14	9930001L01Rik|AU041628|Crsp2|ENSMUSG00000073278|Gm641|ORF1|Trap170	mediator complex subunit 14	protein-coding	0.120000	0.736318	
mm_106359.1	chr11	118393733	118393933	-	1	NA	NA	NA	8098	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.015000	0.542289	
mm_70483.1	chr8	12395806	12396006	+	1	NA	NA	NA	387	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.075000	0.671642	
mm_67761.1	chr7	92741331	92741531	-	1	NA	NA	NA	28	NR_015510	666737	Mm.473620	NR_015510	ENSMUSG00000074024	4632427E13Rik	AU015482	RIKEN cDNA 4632427E13 gene	ncRNA	0.060000	0.587065	
mm_59536.1	chr7	27749448	27749648	+	1	NA	NA	NA	-16125	NR_033484	100043229	Mm.458666	NR_033484	ENSMUSG00000109143	Gm10046	ENSMUSG00000058661	predicted gene 10046	ncRNA	0.025000	0.452736	
mm_91309.1	chr10	24921705	24921905	-	1	NA	NA	NA	5665	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.020000	0.442786	56(GAGTTTTAATGG,-,0.00)
mm_107203.1	chr12	26346637	26346837	+	1	NA	NA	NA	27	NR_130981	75243	Mm.444753	NR_130981		4930549C15Rik	-	RIKEN cDNA 4930549C15 gene	ncRNA	0.005000	0.512438	
mm_39932.1	chr5	31697587	31697787	+	1	NA	NA	NA	-77	NM_153196	71336	Mm.22519	NM_153196	ENSMUSG00000029136	Rbks	5230400M11Rik|AI326806|RBSK|RK	ribokinase	protein-coding	0.085000	0.651741	
mm_1826.1	chr1	82603952	82604152	+	1	NA	NA	NA	17131	NM_007734	12828	Mm.389135	NM_007734	ENSMUSG00000079465	Col4a3	[a]3(IV)|alpha3(IV)	collagen, type IV, alpha 3	protein-coding	0.010000	0.507463	
mm_31929.1	chr4	86053570	86053770	+	1	NA	NA	NA	-245	NM_029967	77739	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	0.025000	0.527363	
mm_32146.1	chr4	99656567	99656767	+	1	NA	NA	NA	368	NM_010425	15221	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	0.135000	0.731343	
mm_44169.1	chr5	150800609	150800809	+	1	NA	NA	NA	126882	NM_001346503	100710	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	0.020000	0.512438	
mm_68906.1	chr7	126456691	126456891	-	1	NA	NA	NA	6282	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.025000	0.537313	
mm_1839.1	chr1	82839466	82839666	+	1	NA	NA	NA	106	NM_001347077	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.150000	0.776119	
mm_37784.1	chr4	130275121	130275321	-	1	NA	NA	NA	-1	NM_001253386	230779	Mm.45132	NM_172702	ENSMUSG00000023232	Serinc2	2310004K20Rik|AW121759|FKSG84|TDE2|Tde2l	serine incorporator 2	protein-coding	0.140000	0.761194	
mm_115746.1	chr13	17944095	17944295	-	1	NA	NA	NA	22	NM_019491	56044	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0.135000	0.786070	
mm_97914.1	chr11	83525714	83525914	+	1	NA	NA	NA	-3715	NM_001045543	629303	Mm.390417	NM_001045543	ENSMUSG00000018925	Heatr9	Gm11435|OTTMUSG00000000990	HEAT repeat containing 9	protein-coding	0.010000	0.492537	
mm_50802.1	chr6	54272672	54272872	+	1	NA	NA	NA	-50	NM_023543	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.020000	0.592040	
mm_51336.1	chr6	72395681	72395881	+	1	NA	NA	NA	-5114	NM_016794	22320	Mm.1838	NM_016794	ENSMUSG00000050732	Vamp8	AU041171|Edb|endobrevin	vesicle-associated membrane protein 8	protein-coding	0.020000	0.437811	
mm_124729.1	chr15	6580440	6580640	+	1	NA	NA	NA	693	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.020000	0.532338	
mm_132217.1	chr16	32630609	32630809	+	1	NA	NA	NA	-13934	NM_001110147	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.010000	0.442786	
mm_2432.1	chr1	95668387	95668587	+	1	NA	NA	NA	-893	NM_001159745	20452	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.015000	0.383085	
mm_86159.1	chr9	118150077	118150277	-	1	NA	NA	NA	19	NM_026442	67899	Mm.9953	NM_026442	ENSMUSG00000039163	Cmc1	2010110K16Rik|2010312P05Rik|AI596001	COX assembly mitochondrial protein 1	protein-coding	0.110000	0.701493	
mm_43519.1	chr5	137150688	137150888	+	1	NA	NA	NA	-34581	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.517413	
mm_64517.1	chr7	143830084	143830284	+	1	NA	NA	NA	7017	NM_007856	13360	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	0.065000	0.597015	
mm_164190.1	chr15	78611320	78611520	+	1	NA	NA	NA	14373	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.025000	0.592040	
mm_106341.1	chr11	118393092	118393292	-	1	NA	NA	NA	8739	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.020000	0.547264	
mm_92994.1	chr10	86704240	86704440	-	1	NA	NA	NA	1104	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.025000	0.507463	
mm_144651.1	chr18	34220865	34221065	+	1	NA	NA	NA	-19	NM_007462	11789	Mm.384171	NM_007462	ENSMUSG00000005871	Apc	AI047805|AU020952|AW124434|CC1|Min|mAPC	adenomatosis polyposis coli	protein-coding	0.125000	0.736318	
mm_119463.1	chr14	47189536	47189736	+	1	NA	NA	NA	-234	NM_008102	14528	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	0.040000	0.517413	-43(ACTTATAAAAGG,-,0.00)
mm_168293.1	chr11	102492531	102492731	-	1	NA	NA	NA	-22748	NM_010575	16399	Mm.26646	NM_010575	ENSMUSG00000034664	Itga2b	AI172977|CD41|CD41B|GpIIb|alphaIIb	integrin alpha 2b	protein-coding	0.035000	0.552239	
mm_147604.1	chr18	56862942	56863142	-	1	NA	NA	NA	62506	NM_177115	320253	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0.000000	0.318408	
mm_123938.1	chr14	73368319	73368519	-	1	NA	NA	NA	16852	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.045000	0.542289	
mm_41999.1	chr5	107900455	107900655	+	1	NA	NA	NA	27	NM_016980	100503670	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	0.095000	0.626866	
mm_156103.1	chrX	113298189	113298389	+	1	NA	NA	NA	33	NM_001142570	93837	Mm.79760	NM_033605	ENSMUSG00000025592	Dach2	9430028N04Rik	dachshund 2 (Drosophila)	protein-coding	0.050000	0.606965	
mm_47376.1	chr5	122988594	122988794	-	1	NA	NA	NA	405	NM_001003953	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.035000	0.502488	
mm_16095.1	chr2	168978155	168978355	+	1	NA	NA	NA	-14	NR_040326	75508	Mm.271256	NR_040326	ENSMUSG00000086348	1700017J07Rik	-	RIKEN cDNA 1700017J07 gene	ncRNA	0.040000	0.562189	
mm_26960.1	chr3	21987727	21987927	-	1	NA	NA	NA	-88825	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.005000	0.457711	
mm_143059.1	chr17	57006977	57007177	-	1	NA	NA	NA	4211	NM_133801	98053	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0.020000	0.527363	
mm_161899.1	chr18	49832872	49833072	+	1	NA	NA	NA	-25	NM_001081371	240283	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0.160000	0.810945	
mm_98006.1	chr11	84179721	84179921	+	1	NA	NA	NA	-12345	NM_001037932	628813	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690|OTTMUSG00000000997	predicted gene 11437	protein-coding	0.140000	0.810945	
mm_19399.1	chr2	91635756	91635956	-	1	NA	NA	NA	601	NM_010168	14061	Mm.89048	NM_010168	ENSMUSG00000027249	F2	Cf-2|Cf2|FII	coagulation factor II	protein-coding	0.035000	0.606965	
mm_109386.1	chr12	109737267	109737467	+	1	NA	NA	NA	-1066	NR_029564	387172		NR_029564	ENSMUSG00000065448	Mir154	Mirn154|mir-154|mmu-mir-154	microRNA 154	ncRNA	0.010000	0.388060	
mm_126334.1	chr15	79894998	79895198	+	1	NA	NA	NA	75	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.015000	0.477612	-99(GCTTTTATATCT,+,0.00)
mm_115169.1	chr13	108043980	108044180	+	1	NA	NA	NA	-394	NM_001048250	75616	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	0.040000	0.557214	
mm_168146.1	chr10	35207297	35207497	+	1	NA	NA	NA	723997	NM_010237	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.005000	0.412935	
mm_99454.1	chr11	102434315	102434515	+	1	NA	NA	NA	4093	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.010000	0.527363	
mm_86747.1	chr10	19494543	19494743	+	1	NA	NA	NA	-97306	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.015000	0.442786	
mm_164089.1	chr15	9140504	9140704	+	1	NA	NA	NA	34	NM_177178	320506	Mm.259886	NM_177178	ENSMUSG00000039704	Lmbrd2	9930036E21Rik	LMBR1 domain containing 2	protein-coding	0.080000	0.646766	
mm_146814.1	chr18	20896271	20896471	-	1	NA	NA	NA	-293	NM_029491	75964	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0.105000	0.691542	
mm_91846.1	chr10	58536291	58536491	-	1	NA	NA	NA	38454	NM_001162956	76138	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.020000	0.532338	61(TCCTTTATAAAG,-,0.00),63(CTTTATAAAGTG,+,0.00)
mm_104547.1	chr11	96773283	96773483	-	1	NA	NA	NA	4172	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.010000	0.522388	
mm_95021.1	chr11	32001605	32001805	+	1	NA	NA	NA	428	NM_001290681	18197	Mm.3304	NM_008741	ENSMUSG00000020297	Nsg2	-	neuron specific gene family member 2	protein-coding	0.015000	0.537313	
mm_168164.1	chr10	51480567	51480767	+	1	NA	NA	NA	55	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.010000	0.462687	
mm_38173.1	chr4	135257587	135257787	-	1	NA	NA	NA	15073	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.000000	0.432836	
mm_74713.1	chr8	17290033	17290233	-	1	NA	NA	NA	245252	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.010000	0.472637	
mm_2730.1	chr1	128244090	128244290	+	1	NA	NA	NA	9	NM_026390	67812	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0.115000	0.626866	
mm_46906.1	chr5	114273957	114274157	-	1	NA	NA	NA	-296	NM_148935	116810	Mm.17709	NM_148935	ENSMUSG00000042002	Foxn4	-	forkhead box N4	protein-coding	0.060000	0.691542	
mm_91962.1	chr10	61180301	61180501	-	1	NA	NA	NA	5139	NM_023064	65971	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.020000	0.522388	
mm_167109.1	chr7	113760120	113760320	+	1	NA	NA	NA	-5778	NM_145584	233744	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.000000	0.482587	-23(GCTTTAATAGCT,+,0.00)
mm_85181.1	chr9	96631089	96631289	-	1	NA	NA	NA	314	NM_053268	114713	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.170000	0.815920	
mm_112095.1	chr12	112785017	112785217	-	1	NA	NA	NA	-23858	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.010000	0.462687	
mm_160291.1	chr7	127588451	127588651	-	1	NA	NA	NA	44	NM_001033040	233899	Mm.25220	NM_001033040	ENSMUSG00000057176	Ccdc189	Gm166	coiled-coil domain containing 189	protein-coding	0.060000	0.587065	
mm_147430.1	chr18	46311809	46312009	-	1	NA	NA	NA	19	NM_001160399	240261	Mm.329416	NM_001160399	ENSMUSG00000071855	Ccdc112	8430438M01Rik|AW108467	coiled-coil domain containing 112	protein-coding	0.115000	0.721393	
mm_13549.1	chr2	112239660	112239860	+	1	NA	NA	NA	-81	NM_207206	99010	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.180000	0.815920	
mm_51965.1	chr6	91758241	91758441	+	1	NA	NA	NA	49052	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.010000	0.552239	
mm_91471.1	chr10	34207133	34207333	-	1	NA	NA	NA	318	NM_172508	212898	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.125000	0.766169	
mm_111753.1	chr12	103951200	103951400	-	1	NA	NA	NA	5597	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	0.005000	0.537313	
mm_27276.1	chr3	41075092	41075292	-	1	NA	NA	NA	7854	NM_027558	70804	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0.000000	0.318408	
mm_132406.1	chr16	35001723	35001923	+	1	NA	NA	NA	-20598	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.010000	0.343284	-21(TTCCTTATAAGA,-,0.00)
mm_4285.1	chr1	171681938	171682138	+	1	NA	NA	NA	-17	NM_007649	12506	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	0.020000	0.442786	
mm_35169.1	chr4	14795959	14796159	-	1	NA	NA	NA	-7	NM_028499	73314	Mm.52613	NM_028499	ENSMUSG00000023151	Lrrc69	1700034K16Rik	leucine rich repeat containing 69	protein-coding	0.005000	0.383085	
mm_157720.1	chrX	70344267	70344467	-	1	NA	NA	NA	20718	NM_010498	15931	Mm.233083	NM_010498	ENSMUSG00000035847	Ids	AW214631	iduronate 2-sulfatase	protein-coding	0.015000	0.472637	
mm_10834.1	chr2	24481250	24481450	+	1	NA	NA	NA	-5751	NM_011040	18510	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0.000000	0.592040	8(GCCCAGAAAAGG,-,0.00)
mm_89747.1	chr10	99233002	99233202	+	1	NA	NA	NA	-30129	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.005000	0.417910	
mm_84483.1	chr9	66845445	66845645	-	1	NA	NA	NA	-10839	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.005000	0.348259	-55(GCCTATAAATGT,-,0.00)
mm_41843.1	chr5	104434438	104434638	+	1	NA	NA	NA	-573	NM_001204201	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.025000	0.482587	
mm_38801.1	chr4	148152066	148152266	-	1	NA	NA	NA	-31	NM_001163707	50762	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	0.030000	0.532338	
mm_136451.1	chr16	94997306	94997506	-	1	NA	NA	NA	290	NM_001025584	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.050000	0.646766	
mm_72276.1	chr8	75100076	75100276	+	1	NA	NA	NA	6558	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.000000	0.537313	
mm_144649.1	chr18	34007073	34007273	+	1	NA	NA	NA	33	NM_013512	13824	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	0.095000	0.681592	
mm_150500.1	chr19	39019347	39019547	+	1	NA	NA	NA	12428	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.000000	0.422886	
mm_100522.1	chr11	120573735	120573935	+	1	NA	NA	NA	-899	NM_011032	18453	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.025000	0.447761	
mm_85365.1	chr9	103220833	103221033	-	1	NA	NA	NA	9353	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.030000	0.547264	
mm_13479.1	chr2	106003270	106003470	+	1	NA	NA	NA	179	NM_026992	99349	Mm.25661	NM_026992	ENSMUSG00000027166	Dnajc24	1700030A21Rik|2610027M02Rik|AV066965|AW240712|Dph4|MmDjC7|Zcsl3	DnaJ heat shock protein family (Hsp40) member C24	protein-coding	0.070000	0.537313	
mm_49840.1	chr6	38284371	38284571	+	1	NA	NA	NA	14788	NM_172467	209032	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	0.060000	0.557214	-62(TCCTTTATAAGA,-,0.00)
mm_93511.1	chr10	115222597	115222797	-	1	NA	NA	NA	28796	NM_025706	66687	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0.010000	0.383085	-88(GCATTTATAGAT,+,0.00)
mm_154131.1	chr19	57314709	57314909	-	1	NA	NA	NA	40849	NR_045319	78120	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	0.120000	0.746269	
mm_12890.1	chr2	84794173	84794373	+	1	NA	NA	NA	-4555	NM_019949	56791	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.025000	0.447761	
mm_4872.1	chr1	187804878	187805078	+	1	NA	NA	NA	-192849	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.005000	0.373134	
mm_5124.1	chr1	9299579	9299779	-	1	NA	NA	NA	198	NM_001290390	71096	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	0.045000	0.562189	
mm_153051.1	chr19	32102982	32103182	-	1	NA	NA	NA	58	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.035000	0.527363	
mm_111993.1	chr12	110695741	110695941	-	1	NA	NA	NA	554	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.095000	0.582090	
mm_64659.1	chr7	4164439	4164639	-	1	NA	NA	NA	160	NM_021454	58804	Mm.34268	NM_021454	ENSMUSG00000063838	Cdc42ep5	1700027J19Rik|2010007O02Rik|Borg3|C85526|CEP5	CDC42 effector protein (Rho GTPase binding) 5	protein-coding	0.025000	0.557214	-73(ACTTTTAGGGAC,+,0.00)
mm_129431.1	chr15	78494264	78494464	-	1	NA	NA	NA	702	NM_008368	16185	Mm.35287	NM_008368	ENSMUSG00000068227	Il2rb	CD122|IL-15Rbeta|IL15Rbeta|Il-2/15Rbeta|Il-2Rbeta|p70	interleukin 2 receptor, beta chain	protein-coding	0.025000	0.532338	
mm_19075.1	chr2	77816687	77816887	-	1	NA	NA	NA	29	NM_178723	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.165000	0.800995	
mm_91837.1	chr10	57517056	57517256	-	1	NA	NA	NA	15373	NM_019760	56442	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	0.010000	0.432836	
mm_135510.1	chr16	48412315	48412515	-	1	NA	NA	NA	1	NR_015373	433023	Mm.483302	NR_015373	ENSMUSG00000110573	Gm5485	EG433023	predicted gene 5485	ncRNA	0.005000	0.402985	
mm_26787.1	chr3	9610140	9610340	-	1	NA	NA	NA	-155	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.035000	0.562189	
mm_102428.1	chr11	59472346	59472546	-	1	NA	NA	NA	28	NM_178417	237775	Mm.339604	NM_178417	ENSMUSG00000054519	Zfp867	-	zinc finger protein 867	protein-coding	0.070000	0.542289	53(GTCCTTATGAGG,-,0.00)
mm_140005.1	chr17	73107985	73108185	+	1	NA	NA	NA	100	NM_001177967	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.120000	0.691542	
mm_138134.1	chr17	34193217	34193417	+	1	NA	NA	NA	-4878	NM_010724	16913	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	0.005000	0.447761	16(CCTTTTATGCCT,+,0.00)
mm_114403.1	chr13	64161714	64161914	+	1	NA	NA	NA	-52	NM_019986	56541	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	0.120000	0.726368	
mm_143689.1	chr17	80253189	80253389	-	1	NA	NA	NA	28800	NM_026053	67242	Mm.279985	NM_026053	ENSMUSG00000055760	Gemin6	2610019B15Rik|2810470M17Rik	gem (nuclear organelle) associated protein 6	protein-coding	0.040000	0.507463	
mm_11916.1	chr2	52071484	52071684	+	1	NA	NA	NA	-1253	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.030000	0.497512	
mm_164630.1	chr17	33551971	33552171	+	1	NA	NA	NA	-3636	NM_053214	17916	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0.005000	0.328358	-52(GCTTATATAACA,+,0.00)
mm_144771.1	chr18	35806360	35806560	+	1	NA	NA	NA	-23358	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.010000	0.338308	
mm_147060.1	chr18	34954161	34954361	-	1	NA	NA	NA	90	NM_010481	15526	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.100000	0.701493	
mm_61776.1	chr7	83641283	83641483	+	1	NA	NA	NA	9366	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.005000	0.547264	
mm_118430.1	chr14	8002864	8003064	+	1	NA	NA	NA	-2	NM_001331064	66082	Mm.181473	NM_025341	ENSMUSG00000025277	Abhd6	0610041D24Rik|AA673485|AV065425	abhydrolase domain containing 6	protein-coding	0.070000	0.651741	
mm_64371.1	chr7	142442262	142442462	+	1	NA	NA	NA	-106	NM_009405	21953	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	0.025000	0.592040	
mm_63307.1	chr7	126861828	126862028	+	1	NA	NA	NA	-44	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	0.090000	0.646766	
mm_153879.1	chr19	46925460	46925660	-	1	NA	NA	NA	36791	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.000000	0.402985	
mm_125580.1	chr15	59489908	59490108	+	1	NA	NA	NA	115810	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.010000	0.427861	
mm_42812.1	chr5	121837148	121837348	+	1	NA	NA	NA	-389	NM_008507	16923	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.080000	0.721393	
mm_101704.1	chr11	42000174	42000374	-	1	NA	NA	NA	440	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding	0.045000	0.492537	
mm_54483.1	chr6	35133637	35133837	-	1	NA	NA	NA	0	NM_001164412	53621	Mm.214525	NM_016877	ENSMUSG00000038784	Cnot4	Not4|Not4h|Not4hp	CCR4-NOT transcription complex, subunit 4	protein-coding	0.085000	0.676617	
mm_66750.1	chr7	46712147	46712347	-	1	NA	NA	NA	-1596	NM_030233	78935	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.020000	0.547264	
mm_121224.1	chr14	103055380	103055580	+	1	NA	NA	NA	8468	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.457711	
mm_69148.1	chr7	127107687	127107887	-	1	NA	NA	NA	14242	NM_133686	67375	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0.015000	0.383085	
mm_93100.1	chr10	89745701	89745901	-	1	NA	NA	NA	810	NM_029166	75089	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0.065000	0.487562	
mm_154290.1	chr19	60994185	60994385	-	1	NA	NA	NA	104536	NM_018869	14773	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	0.005000	0.487562	
mm_94545.1	chr11	9255528	9255728	+	1	NA	NA	NA	63686	NM_178259	268379	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.005000	0.467662	
mm_147712.1	chr18	60812321	60812521	-	1	NA	NA	NA	345	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.015000	0.547264	
mm_139220.1	chr17	47730009	47730209	+	1	NA	NA	NA	3267	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.030000	0.601990	
mm_104038.1	chr11	86301064	86301264	-	1	NA	NA	NA	-43596	NM_027421	70422	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0.030000	0.412935	
mm_56123.1	chr6	87532861	87533061	-	1	NA	NA	NA	298	NM_001037727	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.025000	0.537313	
mm_74062.1	chr8	122376589	122376789	+	1	NA	NA	NA	73	NM_001029993	76014	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	0.130000	0.701493	
mm_140573.1	chr17	9669587	9669787	-	1	NA	NA	NA	17	NM_001163836	67543	Mm.26987	NM_026226	ENSMUSG00000046173	Pabpc6	4932702K14Rik|AI428050|Pabpc3	poly(A) binding protein, cytoplasmic 6	protein-coding	0.045000	0.597015	
mm_47064.1	chr5	116422660	116422860	-	1	NA	NA	NA	104	NM_030704	80888	Mm.21549	NM_030704	ENSMUSG00000041548	Hspb8	AU018630|AW413033|Cryac|D5Ucla4|E2IG1|H11|H11K|HSP20-like|HSP22	heat shock protein 8	protein-coding	0.035000	0.611940	
mm_82261.1	chr9	5440682	5440882	-	1	NA	NA	NA	95306	NM_009808	12364	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0.025000	0.487562	
mm_64779.1	chr7	5020409	5020609	-	1	NA	NA	NA	133	NM_001033383	319748	Mm.86607	NM_001033383	ENSMUSG00000074405	Zfp865	6430526N21Rik|Znf865	zinc finger protein 865	protein-coding	0.105000	0.711443	
mm_128867.1	chr15	72921336	72921536	-	1	NA	NA	NA	-111112	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.015000	0.472637	
mm_137904.1	chr17	31912633	31912833	+	1	NA	NA	NA	-56941	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.025000	0.532338	
mm_157228.1	chrX	14955898	14956098	-	1	NA	NA	NA	155491	NR_033171	67395	Mm.50369	NM_026128	ENSMUSG00000045217	Ppp1r2-ps9	4930403L05Rik	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 9	pseudo	0.005000	0.452736	
mm_117337.1	chr13	69534078	69534278	-	1	NA	NA	NA	-314	NM_001169131	210106	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.175000	0.825871	
mm_133521.1	chr16	90830754	90830954	+	1	NA	NA	NA	-5	NR_133572	70967	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	0.115000	0.696517	
mm_149268.1	chr19	10582096	10582296	+	1	NA	NA	NA	-4810	NR_126092	72982	Mm.391194	NM_028411	ENSMUSG00000024666	Tmem138	1700113I01Rik|2900055D14Rik	transmembrane protein 138	protein-coding	0.015000	0.552239	
mm_129909.1	chr15	84105529	84105729	-	1	NA	NA	NA	125	NM_013873	29859	Mm.248796	NM_013873	ENSMUSG00000018865	Sult4a1	2400007A17Rik|AI853543|BR-STL-1|ST4A1|Sultx3	sulfotransferase family 4A, member 1	protein-coding	0.165000	0.761194	
mm_142063.1	chr17	35673613	35673813	-	1	NA	NA	NA	30	NM_010364	14885	Mm.10182	NM_010364	ENSMUSG00000001524	Gtf2h4	AW545633|BTF2 p52|p52	general transcription factor II H, polypeptide 4	protein-coding	0.015000	0.457711	
mm_62865.1	chr7	114719504	114719704	+	1	NA	NA	NA	961	NM_054084	116903	Mm.273838	NM_054084	ENSMUSG00000030666	Calcb	CGRP2|Calc2	calcitonin-related polypeptide, beta	protein-coding	0.025000	0.517413	
mm_65389.1	chr7	25092320	25092520	-	1	NA	NA	NA	4755	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.010000	0.318408	
mm_118034.1	chr13	101692193	101692393	-	1	NA	NA	NA	337	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.030000	0.427861	
mm_149324.1	chr19	10842666	10842866	+	1	NA	NA	NA	222	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.015000	0.552239	
mm_89407.1	chr10	90747571	90747771	+	1	NA	NA	NA	-81983	NM_001347054	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.005000	0.303483	
mm_155105.1	chrX	48347413	48347613	+	1	NA	NA	NA	6155	NM_178782	320376	Mm.210146	NM_178782	ENSMUSG00000036959	Bcorl1	6720425J07Rik|B930011H20Rik	BCL6 co-repressor-like 1	protein-coding	0.005000	0.437811	
mm_45352.1	chr5	65912237	65912437	-	1	NA	NA	NA	48768	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.015000	0.552239	
mm_90482.1	chr10	127898444	127898644	+	1	NA	NA	NA	9	NM_027301	70061	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	0.005000	0.522388	
mm_56761.1	chr6	116107765	116107965	-	1	NA	NA	NA	85509	NM_177412	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.045000	0.577114	
mm_7705.1	chr1	130448913	130449113	-	1	NA	NA	NA	13731	NM_010016	13136	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0.000000	0.452736	
mm_105077.1	chr11	100803879	100804079	-	1	NA	NA	NA	18591	NM_011489	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.000000	0.393035	
mm_88511.1	chr10	77980569	77980769	+	1	NA	NA	NA	2019	NM_026431	67884	Mm.297512	NM_026431	ENSMUSG00000020284	1810043G02Rik	AV026620|D10Jhu13e	RIKEN cDNA 1810043G02 gene	protein-coding	0.005000	0.517413	53(TGCTTTTTAAGG,-,0.00),55(CTTTTTAAGGAT,+,0.00)
mm_35618.1	chr4	43452431	43452631	-	1	NA	NA	NA	2095	NM_001110320	12517	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.025000	0.572139	
mm_116686.1	chr13	49298553	49298753	-	1	NA	NA	NA	10555	NM_015759	30938	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.035000	0.582090	
mm_125083.1	chr15	26362101	26362301	+	1	NA	NA	NA	53153	NM_001310774	211147	Mm.54257	NM_177597	ENSMUSG00000022269	March11	9630025C22	membrane-associated ring finger (C3HC4) 11	protein-coding	0.015000	0.378109	
mm_42571.1	chr5	117210009	117210209	+	1	NA	NA	NA	76521	NM_183306	330177	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.000000	0.442786	
mm_165157.1	chr2	23138380	23138580	+	1	NA	NA	NA	17544	NM_025979	67121	Mm.253721	NM_025979	ENSMUSG00000026779	Mastl	2700091H24Rik|C88295|GW|GWL|MAST-L|THC2	microtubule associated serine/threonine kinase-like	protein-coding	0.005000	0.437811	
mm_78954.1	chr9	45138772	45138972	+	1	NA	NA	NA	-170	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.105000	0.746269	
mm_35479.1	chr4	40853690	40853890	-	1	NA	NA	NA	747	NM_022305	14595	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0.140000	0.741294	-39(CCCTCTTAAAGC,-,0.00),-38(CCTCTTAAAGCC,+,0.00)
mm_115003.1	chr13	98263232	98263432	+	1	NA	NA	NA	256	NM_001271388	68558	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	0.105000	0.686567	
mm_10329.1	chr2	11339641	11339841	+	1	NA	NA	NA	252	NR_040369	100503147	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	OTTMUSG00000011311	predicted gene 13293	ncRNA	0.005000	0.492537	
mm_19653.1	chr2	102900128	102900328	-	1	NA	NA	NA	1437	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.010000	0.383085	
mm_102846.1	chr11	69369256	69369456	-	1	NA	NA	NA	70	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.060000	0.691542	
mm_30262.1	chr3	146769957	146770157	-	1	NA	NA	NA	181	NM_001164198	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.025000	0.467662	
mm_18757.1	chr2	73437500	73437700	-	1	NA	NA	NA	16289	NM_001289722	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.040000	0.626866	
mm_21156.1	chr2	154569073	154569273	-	1	NA	NA	NA	253	NM_001291105	13555	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|mKIAA4009	E2F transcription factor 1	protein-coding	0.020000	0.562189	
mm_54726.1	chr6	40577639	40577839	-	1	NA	NA	NA	6351	NM_146383	258381	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	0.000000	0.412935	
mm_110391.1	chr12	41412566	41412766	-	1	NA	NA	NA	73391	NM_001271708	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.015000	0.393035	
mm_40523.1	chr5	57918632	57918832	+	1	NA	NA	NA	200651	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.000000	0.348259	
mm_44334.1	chr5	14723636	14723836	-	1	NA	NA	NA	191153	NM_198666	381714	Mm.368256	NM_198666	ENSMUSG00000033219	Gm9758	ENSMUSG00000033219	predicted gene 9758	protein-coding	0.005000	0.393035	
mm_61918.1	chr7	90153185	90153385	+	1	NA	NA	NA	23053	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.358209	
mm_158914.1	chr1	46836031	46836231	-	1	NA	NA	NA	17378	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.000000	0.383085	
mm_87925.1	chr10	62543572	62543772	+	1	NA	NA	NA	34785	NM_028197	72320	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.020000	0.557214	
mm_152505.1	chr19	11196588	11196788	-	1	NA	NA	NA	35	NM_198224	73466	Mm.272723	NM_198224	ENSMUSG00000057240	Ms4a13	1700060E18Rik|Tetm4.2	membrane-spanning 4-domains, subfamily A, member 13	protein-coding	0.035000	0.592040	
mm_74365.1	chr8	128359296	128359496	+	1	NA	NA	NA	155	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.065000	0.497512	
mm_151490.1	chr19	58679946	58680146	+	1	NA	NA	NA	9681	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.015000	0.492537	
mm_29809.1	chr3	127817170	127817370	-	1	NA	NA	NA	20222	NM_001346718	211556	Mm.403486	NM_145964	ENSMUSG00000074238	Ap1ar	AA407621|C78909|Gadkin	adaptor-related protein complex 1 associated regulatory protein	protein-coding	0.015000	0.582090	
mm_66748.1	chr7	46712061	46712261	-	1	NA	NA	NA	-1510	NM_030233	78935	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.020000	0.552239	
mm_133703.1	chr16	93104048	93104248	+	1	NA	NA	NA	249041	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.005000	0.378109	
mm_108948.1	chr12	102283165	102283365	+	1	NA	NA	NA	191	NM_177620	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.155000	0.796020	
mm_24573.1	chr3	93444539	93444739	+	1	NA	NA	NA	2309	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.090000	0.681592	
mm_72328.1	chr8	79017449	79017649	+	1	NA	NA	NA	-10888	NM_001294279	622675	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.010000	0.492537	
mm_98564.1	chr11	95377500	95377700	+	1	NA	NA	NA	-7322	NM_016752	110172	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	Ugalt2	solute carrier family 35, member B1	protein-coding	0.030000	0.621891	
mm_147884.1	chr18	64660973	64661173	-	1	NA	NA	NA	-73	NM_001001488	54670	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0.085000	0.731343	
mm_35822.1	chr4	47011033	47011233	-	1	NA	NA	NA	-19419	NM_001081141	242425	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	0.010000	0.512438	46(GCTTTAAAACAC,+,0.00)
mm_102141.1	chr11	53617185	53617385	-	1	NA	NA	NA	53	NR_027491	16189	Mm.276360	NM_021283	ENSMUSG00000000869	Il4	BSF-1|Il-4	interleukin 4	protein-coding	0.000000	0.482587	
mm_17693.1	chr2	32337935	32338135	-	1	NA	NA	NA	15294	NM_001301737	13429	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	0.040000	0.606965	
mm_15655.1	chr2	163204335	163204535	+	1	NA	NA	NA	-21019	NM_001098799	269389	Mm.207709	NM_001098799	ENSMUSG00000074607	Tox2	AI851523|AV026525|BI987407|Gcx1|RxHMG1	TOX high mobility group box family member 2	protein-coding	0.160000	0.696517	
mm_83131.1	chr9	40435004	40435204	-	1	NA	NA	NA	20660	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.005000	0.452736	
mm_59106.1	chr7	19756120	19756320	+	1	NA	NA	NA	-6647	NM_001159724	19294	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.015000	0.567164	
mm_45032.1	chr5	39338803	39339003	-	1	NA	NA	NA	264671	NR_045416	75095	Mm.332354	NR_045416	ENSMUSG00000106741	4930513D17Rik	-	RIKEN cDNA 4930513D17 gene	ncRNA	0.000000	0.427861	-74(GCCTTTATACAC,+,0.00)
mm_116113.1	chr13	28950100	28950300	-	1	NA	NA	NA	3482	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.020000	0.338308	
mm_95441.1	chr11	50230612	50230812	+	1	NA	NA	NA	-1533	NR_105884	102466765		NR_105884	ENSMUSG00000098474	Mir6919	Gm27889|mmu-mir-6919	microRNA 6919	ncRNA	0.045000	0.537313	
mm_102316.1	chr11	57112341	57112541	-	1	NA	NA	NA	99395	NM_001252403	14799	Mm.4920	NM_008165	ENSMUSG00000020524	Gria1	2900051M01Rik|Glr-1|Glr1|GluA1|GluR-A|GluRA|Glur-1|Glur1|HIPA1|gluR-K1	glutamate receptor, ionotropic, AMPA1 (alpha 1)	protein-coding	0.020000	0.402985	
mm_57851.1	chr6	129470889	129471089	-	1	NA	NA	NA	1790	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.482587	-100(CCCTTTAGAACC,+,0.00)
mm_47778.1	chr5	131950512	131950712	-	1	NA	NA	NA	70343	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.005000	0.248756	
mm_118516.1	chr14	14349868	14350068	+	1	NA	NA	NA	3473	NM_008369	16188	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0.035000	0.582090	
mm_154163.1	chr19	58671636	58671836	-	1	NA	NA	NA	1371	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.025000	0.487562	
mm_97822.1	chr11	82964424	82964624	+	1	NA	NA	NA	-3843	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.010000	0.442786	
mm_146694.1	chr18	12888989	12889189	-	1	NA	NA	NA	-9110	NM_001252489	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.000000	0.388060	
mm_38563.1	chr4	141679450	141679650	-	1	NA	NA	NA	6166	NM_023544	69994	Mm.441022	NM_023544	ENSMUSG00000040715	Rsc1a1	1700027M01Rik|OTTMUSG00000010365|Rs1	regulatory solute carrier protein, family 1, member 1	protein-coding	0.000000	0.373134	
mm_122142.1	chr14	31182711	31182911	-	1	NA	NA	NA	-14170	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.005000	0.522388	
mm_170964.1	chr2	58156752	58156952	-	1	NA	NA	NA	3270	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.005000	0.472637	-65(TTTTTTAAAGTG,+,0.00)
mm_140127.1	chr17	79615098	79615298	+	1	NA	NA	NA	298	NM_201361	381110	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.090000	0.721393	
mm_76363.1	chr8	84773349	84773549	-	1	NA	NA	NA	920	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.025000	0.532338	-34(CCCCTTTAAAAC,-,0.00),-32(CCTTTAAAACAT,+,0.00)
mm_172220.1	chr6	65208565	65208765	-	1	NA	NA	NA	-63935	NM_019455	54486	Mm.410688	NM_019455	ENSMUSG00000029919	Hpgds	H-PGDS|Ptgds2	hematopoietic prostaglandin D synthase	protein-coding	0.065000	0.646766	
mm_107159.1	chr12	24572527	24572727	+	1	NA	NA	NA	340	NM_001161406	195733	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead-like 1 (Drosophila)	protein-coding	0.070000	0.716418	
mm_50229.1	chr6	42350883	42351083	+	1	NA	NA	NA	1155	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.030000	0.601990	
mm_27827.1	chr3	79092668	79092868	-	1	NA	NA	NA	52119	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.040000	0.542289	
mm_42062.1	chr5	109055524	109055724	+	1	NA	NA	NA	3828	NM_001104622	384219	Mm.469885	NM_001104622	ENSMUSG00000091450	Vmn2r11	EG384219	vomeronasal 2, receptor 11	protein-coding	0.010000	0.422886	76(CCTTTTCAGGTG,+,0.00)
mm_62674.1	chr7	109439098	109439298	+	1	NA	NA	NA	-145	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	0.110000	0.661692	
mm_11502.1	chr2	32535632	32535832	+	1	NA	NA	NA	373	NM_153560	98952	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.150000	0.791045	
mm_32512.1	chr4	108579385	108579585	+	1	NA	NA	NA	31	NM_011015	18392	Mm.294154	NM_011015	ENSMUSG00000028587	Orc1	AA545195|MmORC1|Orc1l	origin recognition complex, subunit 1	protein-coding	0.075000	0.597015	
mm_162808.1	chr10	78412824	78413024	-	1	NA	NA	NA	119	NM_010925	18114	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	0.140000	0.691542	
mm_95846.1	chr11	57645353	57645553	+	1	NA	NA	NA	11	NM_134189	171212	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	0.170000	0.796020	
mm_169699.1	chr15	75086367	75086567	+	1	NA	NA	NA	25482	NM_001099217	100041546	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0.005000	0.452736	
mm_31778.1	chr4	63560154	63560354	+	1	NA	NA	NA	-106	NM_144905	230279	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.020000	0.601990	-38(CCTTTTCAACAC,+,0.00)
mm_44519.1	chr5	24373850	24374050	-	1	NA	NA	NA	9131	NM_008713	18127	Mm.258415	NM_008713	ENSMUSG00000028978	Nos3	2310065A03Rik|Nos-3|eNOS|ecNOS	nitric oxide synthase 3, endothelial cell	protein-coding	0.025000	0.542289	-26(TGGTATAAAGGC,-,0.00)
mm_48315.1	chr5	138976414	138976614	-	1	NA	NA	NA	18439	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.035000	0.368159	
mm_86575.1	chr10	12868874	12869074	+	1	NA	NA	NA	-7239	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.060000	0.601990	
mm_114307.1	chr13	59657151	59657351	+	1	NA	NA	NA	18533	NM_001035122	105348	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0.010000	0.437811	
mm_10215.1	chr2	5852751	5852951	+	1	NA	NA	NA	7817	NM_016918	53893	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	0.010000	0.442786	-33(GGCGATAAAAGG,-,0.00)
mm_101648.1	chr11	36559101	36559301	-	1	NA	NA	NA	385040	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.005000	0.308458	
mm_127970.1	chr15	12032511	12032711	-	1	NA	NA	NA	-36604	NM_011294	20024	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.010000	0.447761	
mm_139221.1	chr17	47730047	47730247	+	1	NA	NA	NA	3305	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.025000	0.587065	
mm_21435.1	chr2	158606537	158606737	-	1	NA	NA	NA	4086	NR_040358	100045469	Mm.143404	NR_040358	ENSMUSG00000086496	Gm14204	OTTMUSG00000015935	predicted gene 14204	ncRNA	0.005000	0.427861	
mm_81555.1	chr9	110344072	110344272	+	1	NA	NA	NA	10816	NM_001001144	235623	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0.010000	0.467662	
mm_158749.1	chrX	164980233	164980433	-	1	NA	NA	NA	42	NM_001290523	76763	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	0.050000	0.597015	
mm_137079.1	chr17	21383646	21383846	+	1	NA	NA	NA	-2	NM_172486	210503	Mm.33443	NM_172486	ENSMUSG00000062743	Zfp677	A830058L05Rik|Tce8	zinc finger protein 677	protein-coding	0.040000	0.547264	
mm_155885.1	chrX	101532734	101532934	+	1	NA	NA	NA	99	NM_001290729	270627	Mm.261750	NM_001081008	ENSMUSG00000031314	Taf1	AU015687|B430306D02Rik|Ccg-1|Ccg1|KAT4|N-TAF1|TAFII250|Taf2a|p250	TATA-box binding protein associated factor 1	protein-coding	0.070000	0.597015	
mm_162130.1	chrX	73117546	73117746	-	1	NA	NA	NA	56	NM_001045539	574438	Mm.435653	NM_001045539	ENSMUSG00000058328	Xlr5a	Xlr5d	X-linked lymphocyte-regulated 5A	protein-coding	0.040000	0.582090	
mm_51874.1	chr6	90552408	90552608	+	1	NA	NA	NA	1660	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.000000	0.457711	
mm_160795.1	chr11	4257306	4257506	+	1	NA	NA	NA	-162	NM_008501	16878	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.025000	0.626866	
mm_108451.1	chr12	82616427	82616627	+	1	NA	NA	NA	-398	NM_001310478	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0.055000	0.497512	
mm_119153.1	chr14	31500024	31500224	+	1	NA	NA	NA	5045	NM_028932	74427	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	0.040000	0.487562	
mm_110982.1	chr12	77064134	77064334	-	1	NA	NA	NA	-101986	NM_001146176	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.010000	0.592040	
mm_153031.1	chr19	31764908	31765108	-	1	NA	NA	NA	25	NM_001013833	19091	Mm.381170	NM_011160	ENSMUSG00000052920	Prkg1	AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b	protein kinase, cGMP-dependent, type I	protein-coding	0.040000	0.582090	-5(CCTTTTAGACGC,+,0.00)
mm_50142.1	chr6	41543267	41543467	+	1	NA	NA	NA	21591	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.020000	0.517413	
mm_107184.1	chr12	25042564	25042764	+	1	NA	NA	NA	53428	NM_010496	15902	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.025000	0.447761	
mm_93793.1	chr10	120782238	120782438	-	1	NA	NA	NA	16606	NR_038003	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.020000	0.507463	
mm_134269.1	chr16	13902960	13903160	-	1	NA	NA	NA	85	NM_001039533	94184	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0.130000	0.776119	
mm_128032.1	chr15	25363678	25363878	-	1	NA	NA	NA	49986	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.025000	0.422886	-90(CCTTAAAAACCC,+,0.00)
mm_4018.1	chr1	165655425	165655625	+	1	NA	NA	NA	-20984	NM_001083897	68481	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.020000	0.552239	
mm_126366.1	chr15	80099057	80099257	+	1	NA	NA	NA	7823	NM_207708	20972	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0.005000	0.567164	
mm_88700.1	chr10	80142442	80142642	+	1	NA	NA	NA	227	NM_025313	66043	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0.100000	0.671642	
mm_29675.1	chr3	122871478	122871678	-	1	NA	NA	NA	-23494	NM_007980	14079	Mm.28398	NM_007980	ENSMUSG00000023057	Fabp2	Fabpi|I-FABP	fatty acid binding protein 2, intestinal	protein-coding	0.005000	0.417910	
mm_125906.1	chr15	75993694	75993894	+	1	NA	NA	NA	25	NM_177922	332110	Mm.40843	NM_177922	ENSMUSG00000063704	Mapk15	BC048082	mitogen-activated protein kinase 15	protein-coding	0.060000	0.636816	
mm_141167.1	chr17	26532542	26532742	-	1	NA	NA	NA	-24170	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.000000	0.507463	
mm_146454.1	chr18	86395109	86395309	+	1	NA	NA	NA	257	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.055000	0.661692	
mm_55674.1	chr6	72552653	72552853	-	1	NA	NA	NA	3106	NM_001271395	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.020000	0.542289	
mm_107785.1	chr12	61534125	61534325	+	1	NA	NA	NA	11058	NM_001310586	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.000000	0.338308	
mm_161705.1	chr17	24658156	24658356	-	1	NA	NA	NA	169	NM_001099664	381073	Mm.291772	NM_001099664	ENSMUSG00000071230	Npw	Gm935	neuropeptide W	protein-coding	0.100000	0.721393	
mm_77716.1	chr8	126593885	126594085	-	1	NA	NA	NA	-549	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.130000	0.756219	
mm_138419.1	chr17	35069361	35069561	+	1	NA	NA	NA	2136	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.030000	0.562189	
mm_32486.1	chr4	107895709	107895909	+	1	NA	NA	NA	5910	NM_028754	74098	Mm.274853	NM_028754	ENSMUSG00000028608	0610037L13Rik	1110008H16Rik	RIKEN cDNA 0610037L13 gene	protein-coding	0.005000	0.363184	
mm_139168.1	chr17	47557756	47557956	+	1	NA	NA	NA	-35611	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.452736	
mm_92763.1	chr10	81092504	81092704	-	1	NA	NA	NA	6268	NM_145365	208677	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	0.040000	0.616915	
mm_69871.1	chr7	141475050	141475250	-	1	NA	NA	NA	3	NM_025593	66491	Mm.380115	NM_025593	ENSMUSG00000038489	Polr2l	2510029B14Rik	polymerase (RNA) II (DNA directed) polypeptide L	protein-coding	0.095000	0.666667	-16(GCCTTGAAAAGC,-,0.00)
mm_10467.1	chr2	14330972	14331172	+	1	NA	NA	NA	-57326	NM_001012305	277468	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0.035000	0.472637	
mm_25880.1	chr3	130817752	130817952	+	1	NA	NA	NA	-87454	NM_001005859	68436	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.005000	0.507463	
mm_123478.1	chr14	65976865	65977065	-	1	NA	NA	NA	8482	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.020000	0.552239	
mm_49574.1	chr6	30641408	30641608	+	1	NA	NA	NA	2290	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.015000	0.567164	
mm_165495.1	chr2	166116964	166117164	+	1	NA	NA	NA	38221	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.045000	0.582090	
mm_35429.1	chr4	36005906	36006106	-	1	NA	NA	NA	-160802	NM_175516	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.000000	0.378109	
mm_130716.1	chr15	101047325	101047525	-	1	NA	NA	NA	6974	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.060000	0.621891	
mm_153530.1	chr19	41848140	41848340	-	1	NA	NA	NA	-108	NM_177603	212398	Mm.222723	NM_177603	ENSMUSG00000047604	Frat2	-	frequently rearranged in advanced T cell lymphomas 2	protein-coding	0.125000	0.656716	
mm_60192.1	chr7	43408142	43408342	+	1	NA	NA	NA	-38	NM_172900	243958	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0.000000	0.522388	
mm_2528.1	chr1	106934353	106934553	+	1	NA	NA	NA	4	NM_027971	71869	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	0.015000	0.437811	
mm_12970.1	chr2	90745362	90745562	+	1	NA	NA	NA	92	NM_018828	55935	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0.100000	0.606965	
mm_157374.1	chrX	37878464	37878664	-	1	NA	NA	NA	380	NM_001004193	434768	Mm.336025	NM_001004193	ENSMUSG00000064137	Rhox8	Tox	reproductive homeobox 8	protein-coding	0.020000	0.547264	
mm_164260.1	chr15	100306789	100306989	+	1	NA	NA	NA	2072	NM_027334	70152	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	0.000000	0.378109	
mm_60426.1	chr7	44476538	44476738	+	1	NA	NA	NA	6291	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.388060	
mm_167413.1	chr8	107168009	107168209	+	1	NA	NA	NA	17448	NM_025558	66427	Mm.20242	NM_025558	ENSMUSG00000031924	Cyb5b	1810044O22Rik|AU015618|Cyb5m	cytochrome b5 type B	protein-coding	0.010000	0.452736	
mm_135399.1	chr16	44558770	44558970	-	1	NA	NA	NA	0	NM_172506	117606	Mm.41561	NM_172506	ENSMUSG00000022687	Boc	4732455C11|mFLJ00376	biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein	protein-coding	0.050000	0.582090	
mm_99665.1	chr11	105943253	105943453	+	1	NA	NA	NA	794	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.010000	0.507463	
mm_32383.1	chr4	106560955	106561155	+	1	NA	NA	NA	17	NM_053272	74754	Mm.133370	NM_053272	ENSMUSG00000034926	Dhcr24	2310076D10Rik|5830417J06Rik|mKIAA0018	24-dehydrocholesterol reductase	protein-coding	0.160000	0.771144	
mm_75842.1	chr8	70608196	70608396	-	1	NA	NA	NA	18	NM_133772	76900	Mm.6667	NM_133772	ENSMUSG00000070003	Ssbp4	1210002E11Rik|AW743380|Sspb4	single stranded DNA binding protein 4	protein-coding	0.185000	0.810945	-52(CACTTTAAGAGC,-,0.00),-51(ACTTTAAGAGCG,+,0.00)
mm_63409.1	chr7	127333559	127333759	+	1	NA	NA	NA	11655	NM_146202	233890	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0.015000	0.517413	
mm_108407.1	chr12	81663268	81663468	+	1	NA	NA	NA	32119	NM_001033149	69480	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	0.030000	0.587065	
mm_30107.1	chr3	138975287	138975487	-	1	NA	NA	NA	99814	NM_145544	229877	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.005000	0.393035	-70(CAGTATATAAAG,-,0.00),-68(GTATATAAAGGC,+,0.00),-68(GTATATAAAGGC,-,0.00),-20(ATCTTTAAAAGC,-,0.00),-19(TCTTTAAAAGCT,+,0.00)
mm_77698.1	chr8	126589682	126589882	-	1	NA	NA	NA	3654	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.000000	0.343284	
mm_147985.1	chr18	67610666	67610866	-	1	NA	NA	NA	30570	NM_001081073	225659	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0.200000	0.830846	
mm_93084.1	chr10	89548140	89548340	-	1	NA	NA	NA	-14618	NM_001163504	20186	Mm.3095	NM_009108	ENSMUSG00000047638	Nr1h4	AI957360|Fxr|HRR1|RIP14|Rxrip14	nuclear receptor subfamily 1, group H, member 4	protein-coding	0.015000	0.477612	
mm_13124.1	chr2	91664494	91664694	+	1	NA	NA	NA	11386	NM_146124	228359	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	0.010000	0.427861	
mm_87818.1	chr10	60302172	60302372	+	1	NA	NA	NA	17811	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.577114	
mm_19673.1	chr2	103454270	103454470	-	1	NA	NA	NA	30302	NM_010125	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.005000	0.378109	
mm_119005.1	chr14	29018162	29018362	+	1	NA	NA	NA	54	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding	0.015000	0.417910	
mm_80108.1	chr9	70399275	70399475	+	1	NA	NA	NA	6378	NR_049200	100885839		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0.020000	0.542289	
mm_124602.1	chr15	3277122	3277322	+	1	NA	NA	NA	6245	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.020000	0.427861	-73(CCTTTTAGATGT,+,0.00)
mm_93988.1	chr10	127521029	127521229	-	1	NA	NA	NA	1315	NM_001252316	108037	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0.025000	0.601990	
mm_111383.1	chr12	87420915	87421115	-	1	NA	NA	NA	16742	NR_037228	100526546		NR_037228	ENSMUSG00000105428	Mir3068	mir-3068|mmu-mir-3068	microRNA 3068	ncRNA	0.015000	0.412935	
mm_892.1	chr1	53061540	53061740	+	1	NA	NA	NA	0	NM_010834	17700	Mm.3514	NM_010834	ENSMUSG00000026100	Mstn	Cmpt|Gdf8	myostatin	protein-coding	0.025000	0.432836	-32(GAATATAAAAAG,-,0.00)
mm_31940.1	chr4	86576816	86577016	+	1	NA	NA	NA	1243	NM_178376	68441	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	0.020000	0.373134	
mm_132608.1	chr16	38564138	38564338	+	1	NA	NA	NA	1424	NM_026407	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.040000	0.547264	
mm_131827.1	chr16	22951009	22951209	+	1	NA	NA	NA	37	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.005000	0.437811	
mm_165272.1	chr2	75704562	75704762	-	1	NA	NA	NA	1	NR_132727	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.050000	0.671642	
mm_157934.1	chrX	81822783	81822983	-	1	NA	NA	NA	-364761	NM_173435	245492	Mm.109633	NM_173435	ENSMUSG00000060673	4930595M18Rik	-	RIKEN cDNA 4930595M18 gene	protein-coding	0.045000	0.597015	
mm_110761.1	chr12	70113650	70113850	-	1	NA	NA	NA	-1715	NR_104397	18080	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0.020000	0.492537	
mm_88950.1	chr10	81364193	81364393	+	1	NA	NA	NA	1527	NM_001014836	432479	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.060000	0.656716	
mm_107558.1	chr12	41395640	41395840	+	1	NA	NA	NA	90317	NM_001271708	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.010000	0.398010	
mm_92209.1	chr10	68211992	68212192	-	1	NA	NA	NA	66634	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.015000	0.417910	-34(ACTTTAATGGGG,+,0.00)
mm_132609.1	chr16	38585267	38585467	+	1	NA	NA	NA	22553	NM_026407	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.015000	0.472637	-35(GTCTCTAAAAGA,-,0.00)
mm_19301.1	chr2	90471154	90471354	-	1	NA	NA	NA	7920	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.025000	0.407960	
mm_7952.1	chr1	133915299	133915499	-	1	NA	NA	NA	6002	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.020000	0.552239	
mm_70599.1	chr8	13338651	13338851	+	1	NA	NA	NA	0	NM_001291765	21781	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	0.185000	0.800995	
mm_58112.1	chr6	138422807	138423007	-	1	NA	NA	NA	-198	NR_126073	319702	Mm.403785	NR_126072	ENSMUSG00000089957	A830011K09Rik	-	RIKEN cDNA A830011K09 gene	ncRNA	0.030000	0.552239	
mm_34239.1	chr4	141180105	141180305	+	1	NA	NA	NA	32283	NM_172518	213499	Mm.28865	NM_172518	ENSMUSG00000028920	Fbxo42	6720460I06Rik|mKIAA1332	F-box protein 42	protein-coding	0.015000	0.407960	
mm_72877.1	chr8	88697028	88697228	+	1	NA	NA	NA	100	NM_001128171	74256	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	0.135000	0.771144	
mm_95431.1	chr11	50202864	50203064	+	1	NA	NA	NA	7856	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.015000	0.547264	
mm_6276.1	chr1	69682957	69683157	-	1	NA	NA	NA	2903	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.020000	0.447761	
mm_172755.1	chr8	85553205	85553405	-	1	NA	NA	NA	1966	NM_019794	56445	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0.035000	0.457711	
mm_90900.1	chr10	10558125	10558325	-	1	NA	NA	NA	-18	NM_026405	67844	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0.070000	0.671642	
mm_119670.1	chr14	52567093	52567293	+	1	NA	NA	NA	-71498	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.005000	0.487562	
mm_131879.1	chr16	23224711	23224911	+	1	NA	NA	NA	71	NM_145933	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.040000	0.542289	
mm_48559.1	chr5	143154884	143155084	-	1	NA	NA	NA	10767	NR_040426	100042605	Mm.332809	NR_040424	ENSMUSG00000104529	Rbakdn	Gm3925	RB-associated KRAB zinc finger downstream neighbor (non-protein coding)	ncRNA	0.040000	0.567164	
mm_489.1	chr1	36767364	36767564	+	1	NA	NA	NA	530	NM_001289765	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.020000	0.567164	
mm_79129.1	chr9	47540525	47540725	+	1	NA	NA	NA	10273	NM_018770	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.000000	0.318408	
mm_111173.1	chr12	83668135	83668335	-	1	NA	NA	NA	-20328	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.060000	0.457711	
mm_114327.1	chr13	60613712	60613912	+	1	NA	NA	NA	11601	NM_134062	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.005000	0.442786	
mm_88810.1	chr10	80765558	80765758	+	1	NA	NA	NA	10452	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.010000	0.477612	
mm_13585.1	chr2	112379215	112379415	+	1	NA	NA	NA	104	NM_024254	72425	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	0.125000	0.711443	
mm_38453.1	chr4	140246832	140247032	-	1	NA	NA	NA	-121	NM_198610	230868	Mm.298731	NM_198610	ENSMUSG00000040972	Igsf21	BC055811|Gm141	immunoglobulin superfamily, member 21	protein-coding	0.075000	0.636816	
mm_56119.1	chr6	87532195	87532395	-	1	NA	NA	NA	964	NM_001037727	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.020000	0.353234	
mm_100570.1	chr11	120762724	120762924	+	1	NA	NA	NA	21380	NM_009053	19719	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.035000	0.557214	
mm_39811.1	chr5	30647917	30648117	+	1	NA	NA	NA	78	NM_175675	74919	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	0.050000	0.587065	
mm_140337.1	chr17	86778671	86778871	+	1	NA	NA	NA	24907	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.025000	0.502488	
mm_71211.1	chr8	40890611	40890811	+	1	NA	NA	NA	28344	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.015000	0.393035	
mm_22209.1	chr2	174169606	174169806	-	1	NA	NA	NA	14212	NR_040530	100038374	Mm.127249	NR_040530	ENSMUSG00000074555	Gm10714	ENSMUSG00000074555	predicted gene 10714	ncRNA	0.015000	0.477612	
mm_60171.1	chr7	40987460	40987660	+	1	NA	NA	NA	-49	NM_207248	243944	Mm.333806	NM_207248	ENSMUSG00000091692	4930433I11Rik	Gm481	RIKEN cDNA 4930433I11 gene	protein-coding	0.000000	0.472637	
mm_84651.1	chr9	71592228	71592428	-	1	NA	NA	NA	32	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	0.080000	0.711443	
mm_134644.1	chr16	21775392	21775592	-	1	NA	NA	NA	12342	NM_023737	74147	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0.015000	0.507463	
mm_152910.1	chr19	27262169	27262369	-	1	NA	NA	NA	45249	NM_001161420	22359	Mm.4141	NM_013703	ENSMUSG00000024924	Vldlr	AA408956|AI451093|AW047288	very low density lipoprotein receptor	protein-coding	0.010000	0.487562	
mm_51749.1	chr6	87428893	87429093	+	1	NA	NA	NA	-1	NM_009756	12154	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	-	bone morphogenetic protein 10	protein-coding	0.030000	0.552239	
mm_48363.1	chr5	139408416	139408616	-	1	NA	NA	NA	2129	NM_177000	319772	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.025000	0.587065	
mm_134129.1	chr16	10447225	10447425	-	1	NA	NA	NA	25	NM_001013778	383103	Mm.325732	NM_001013778	ENSMUSG00000050908	Tvp23a	Fam18a	trans-golgi network vesicle protein 23A	protein-coding	0.035000	0.616915	
mm_139835.1	chr17	69156504	69156704	+	1	NA	NA	NA	-206	NM_013813	13823	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.040000	0.611940	-80(ATCTCTAAAGGG,-,0.00)
mm_49558.1	chr6	30554499	30554699	+	1	NA	NA	NA	12957	NM_001024698	232680	Mm.268855	NM_001024698	ENSMUSG00000071553	Cpa2	-	carboxypeptidase A2, pancreatic	protein-coding	0.005000	0.373134	
mm_52853.1	chr6	121865734	121865934	+	1	NA	NA	NA	27293	NM_008645	17836	Mm.1311	NM_008645	ENSMUSG00000059908	Mug1	-	murinoglobulin 1	protein-coding	0.025000	0.552239	
mm_11027.1	chr2	26910658	26910858	+	1	NA	NA	NA	-49	NM_013721	27176	Mm.328601	NM_013721	ENSMUSG00000062647	Rpl7a	Surf3	ribosomal protein L7A	protein-coding	0.090000	0.616915	
mm_27187.1	chr3	34650942	34651142	-	1	NA	NA	NA	1047	NM_011443	20674	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0.085000	0.656716	
mm_118820.1	chr14	25529779	25529979	+	1	NA	NA	NA	-4560	NR_037236	100526533		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.010000	0.462687	
mm_49522.1	chr6	29957450	29957650	+	1	NA	NA	NA	-27779	NR_040264	76419	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	0.000000	0.323383	-73(ATCTTTATAAAG,-,0.00),-71(CTTTATAAAGGA,+,0.00)
mm_68425.1	chr7	109760111	109760311	-	1	NA	NA	NA	-7948	NM_020050	56786	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	0.000000	0.497512	
mm_111215.1	chr12	84408878	84409078	-	1	NA	NA	NA	51	NM_007647	12499	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0.195000	0.820896	
mm_143270.1	chr17	65642118	65642318	-	1	NA	NA	NA	-14	NM_001146002	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.015000	0.477612	-87(GCCTTGTAAAGC,-,0.00)
mm_100599.1	chr11	121204370	121204570	+	1	NA	NA	NA	37	NM_001001333	238023	Mm.275130	NM_001001333	ENSMUSG00000039307	Hexdc	BC069960	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing	protein-coding	0.105000	0.706468	
mm_118413.1	chr14	7791341	7791541	+	1	NA	NA	NA	-26516	NM_001081427	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.075000	0.587065	
mm_67756.1	chr7	92669771	92669971	-	1	NA	NA	NA	41	NM_029078	74737	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	0.095000	0.641791	
mm_116388.1	chr13	41184340	41184540	-	1	NA	NA	NA	35722	NM_001311121	54326	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0.005000	0.457711	
mm_55396.1	chr6	60760104	60760304	-	1	NA	NA	NA	68800	NM_001042451	20617	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alphaSYN	synuclein, alpha	protein-coding	0.020000	0.407960	
mm_94313.1	chr11	4223548	4223748	+	1	NA	NA	NA	5397	NM_028022	71962	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik	GATS protein-like 3	protein-coding	0.015000	0.631841	-35(CCCTAGAAAAGC,-,0.00)
mm_38144.1	chr4	134853209	134853409	-	1	NA	NA	NA	36	NM_025382	66146	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61	transmembrane protein 57	protein-coding	0.115000	0.726368	
mm_125555.1	chr15	58872571	58872771	+	1	NA	NA	NA	22	NM_026642	68260	Mm.278805	NM_026642	ENSMUSG00000037085	Trmt12	4632406N01Rik|AI449275|Tyw2	tRNA methyltranferase 12	protein-coding	0.080000	0.527363	
mm_22811.1	chr3	27183643	27183843	+	1	NA	NA	NA	739	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.030000	0.522388	
mm_172506.1	chr7	68275858	68276058	+	1	NA	NA	NA	636	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.035000	0.636816	
mm_60695.1	chr7	45175124	45175324	+	1	NA	NA	NA	1921	NR_106022	102465638		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0.020000	0.577114	
mm_10627.1	chr2	19657964	19658164	+	1	NA	NA	NA	2	NM_027715	71198	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	0.120000	0.736318	
mm_84865.1	chr9	78615551	78615751	-	1	NA	NA	NA	105	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.055000	0.601990	
mm_138502.1	chr17	35220188	35220388	+	1	NA	NA	NA	-14722	NM_001347351	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.025000	0.547264	
mm_46165.1	chr5	96163478	96163678	-	1	NA	NA	NA	-1588	NM_144910	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.000000	0.383085	
mm_142635.1	chr17	47414633	47414833	-	1	NA	NA	NA	-22	NM_001172091	75462	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.010000	0.492537	48(CTCTCTAAATGC,-,0.00)
mm_38798.1	chr4	148151806	148152006	-	1	NA	NA	NA	19	NM_001163705	50762	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	0.100000	0.736318	
mm_63666.1	chr7	129601442	129601642	+	1	NA	NA	NA	9679	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.000000	0.407960	
mm_60477.1	chr7	44478193	44478393	+	1	NA	NA	NA	-6224	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.452736	
mm_143388.1	chr17	68874150	68874350	-	1	NA	NA	NA	37114	NM_001206661	622645	Mm.86422	NM_001206661	ENSMUSG00000095407	Tmem200c	EG622645|Gm6338	transmembrane protein 200C	protein-coding	0.025000	0.527363	
mm_90394.1	chr10	127323618	127323818	+	1	NA	NA	NA	-9	NM_146011	216445	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.015000	0.577114	
mm_70541.1	chr8	13039443	13039643	+	1	NA	NA	NA	2235	NM_001242368	14058	Mm.262589	NM_007972	ENSMUSG00000031444	F10	Cf10|fX	coagulation factor X	protein-coding	0.035000	0.462687	
mm_67905.1	chr7	99695529	99695729	-	1	NA	NA	NA	180	NM_001252531	101488	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0.015000	0.497512	
mm_149132.1	chr19	9002386	9002586	+	1	NA	NA	NA	13202	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.005000	0.522388	
mm_122384.1	chr14	40899221	40899421	-	1	NA	NA	NA	-6356	NM_177816	328381	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.020000	0.522388	
mm_119451.1	chr14	46889270	46889470	+	1	NA	NA	NA	6405	NM_001037221	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.020000	0.492537	
mm_163610.1	chr13	50885756	50885956	+	1	NA	NA	NA	-120608	NR_045364	71654	Mm.427318	NR_045364		4930518P08Rik	-	RIKEN cDNA 4930518P08 gene	ncRNA	0.005000	0.497512	
mm_172029.1	chr6	123195615	123195815	-	1	NA	NA	NA	22692	NM_001004159	381809	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	0.015000	0.437811	
mm_48447.1	chr5	140692445	140692645	-	1	NA	NA	NA	9833	NM_028833	74239	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	0.010000	0.497512	-40(CCCCTTAAATAG,-,0.00),-38(CCTTAAATAGAA,+,0.00),-23(TCATTTAAAGTC,+,0.00)
mm_16977.1	chr2	18027371	18027571	-	1	NA	NA	NA	222	NR_028378	100034739	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	0.075000	0.631841	
mm_107296.1	chr12	30884169	30884369	+	1	NA	NA	NA	-55	NM_001159743	100294583	Mm.399726	NM_001159743	ENSMUSG00000054204	Fam150b	6230419C23Rik	family with sequence similarity 150, member B	protein-coding	0.130000	0.686567	
mm_3419.1	chr1	146323102	146323302	+	1	NA	NA	NA	-172464	NM_153539	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.000000	0.517413	-33(CCCCTTATAAGC,-,0.00),-31(CCTTATAAGCAC,+,0.00)
mm_26252.1	chr3	142000584	142000784	+	1	NA	NA	NA	-18420	NM_007560	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.025000	0.388060	
mm_162803.1	chr10	77536984	77537184	+	1	NA	NA	NA	6736	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.020000	0.512438	
mm_59447.1	chr7	27133344	27133544	+	1	NA	NA	NA	13489	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.020000	0.527363	
mm_17061.1	chr2	22588966	22589166	-	1	NA	NA	NA	-33261	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.025000	0.412935	
mm_50916.1	chr6	57602748	57602948	+	1	NA	NA	NA	21856	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.015000	0.482587	
mm_1253.1	chr1	62818152	62818352	+	1	NA	NA	NA	-23520	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.010000	0.442786	
mm_93693.1	chr10	117844218	117844418	-	1	NA	NA	NA	1656	NM_024457	215449	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.010000	0.373134	
mm_44579.1	chr5	24842461	24842661	-	1	NA	NA	NA	-200	NM_053075	19744	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.135000	0.646766	11(CCCTTTAAAGTA,+,0.00)
mm_162281.1	chr1	20356318	20356518	+	1	NA	NA	NA	-36	NR_045734	75028	Mm.417820	NR_045734	ENSMUSG00000089914	4930486I03Rik	-	RIKEN cDNA 4930486I03 gene	ncRNA	0.000000	0.477612	
mm_38999.1	chr4	151853166	151853366	-	1	NA	NA	NA	8502	NM_001081557	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.005000	0.412935	
mm_141655.1	chr17	33713259	33713459	-	1	NA	NA	NA	5318	NM_145486	224703	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	0.010000	0.432836	
mm_123419.1	chr14	64413400	64413600	-	1	NA	NA	NA	3456	NM_001253716	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.005000	0.457711	-68(TCCCTTTAATGG,-,0.00),-66(CCTTTAATGGAT,+,0.00)
mm_25204.1	chr3	103803538	103803738	+	1	NA	NA	NA	509	NR_040412	100503157	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	OTTMUSG00000022448	predicted gene 15471	ncRNA	0.015000	0.522388	
mm_70530.1	chr8	13031840	13032040	+	1	NA	NA	NA	-5368	NM_007972	14058	Mm.262589	NM_007972	ENSMUSG00000031444	F10	Cf10|fX	coagulation factor X	protein-coding	0.010000	0.492537	
mm_90303.1	chr10	126928376	126928576	+	1	NA	NA	NA	-27105	NM_001159559	68876	Mm.276769	NM_026858	ENSMUSG00000025436	Xrcc6bp1	1110068E08Rik|2410012H02Rik|Atp23	XRCC6 binding protein 1	protein-coding	0.095000	0.746269	
mm_83566.1	chr9	46315835	46316035	-	1	NA	NA	NA	4051	NM_183104	74361	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding	0.015000	0.497512	
mm_157692.1	chrX	60403881	60404081	-	1	NA	NA	NA	0	NM_001001798	320940	Mm.490394	NM_001001798	ENSMUSG00000062949	Atp11c	A330005H02Rik|AI315324|Ig	ATPase, class VI, type 11C	protein-coding	0.160000	0.815920	
mm_104641.1	chr11	97533062	97533262	-	1	NA	NA	NA	-32822	NM_001289118	100141474	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.040000	0.631841	
mm_114117.1	chr13	55016693	55016893	+	1	NA	NA	NA	4026	NM_001206390	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.020000	0.457711	
mm_52130.1	chr6	97944248	97944448	+	1	NA	NA	NA	14531	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.338308	
mm_70717.1	chr8	15086143	15086343	+	1	NA	NA	NA	28590	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.015000	0.422886	
mm_59840.1	chr7	29519064	29519264	+	1	NA	NA	NA	-13704	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.095000	0.651741	
mm_51769.1	chr6	88047980	88048180	+	1	NA	NA	NA	-2810	NM_009005	19349	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.010000	0.437811	
mm_39524.1	chr5	21265457	21265657	+	1	NA	NA	NA	79290	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.000000	0.417910	
mm_75091.1	chr8	34055804	34056004	-	1	NA	NA	NA	51910	NM_001293758	22428	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.020000	0.532338	
mm_2309.1	chr1	91540982	91541182	+	1	NA	NA	NA	2	NM_023046	65247	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	0.070000	0.636816	
mm_102200.1	chr11	54726721	54726921	-	1	NA	NA	NA	60882	NM_178626	72729	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.005000	0.482587	
mm_29964.1	chr3	133464845	133465045	-	1	NA	NA	NA	79445	NM_001346736	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.005000	0.318408	
mm_78421.1	chr9	31041788	31041988	+	1	NA	NA	NA	11244	NM_172765	235132	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.000000	0.323383	
mm_53866.1	chr6	149328446	149328646	+	1	NA	NA	NA	19132	NM_001289662	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.000000	0.358209	
mm_114378.1	chr13	63239464	63239664	+	1	NA	NA	NA	-465	NR_110520	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.015000	0.502488	
mm_146760.1	chr18	16808707	16808907	-	1	NA	NA	NA	439	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.100000	0.706468	
mm_83620.1	chr9	48822000	48822200	-	1	NA	NA	NA	13845	NM_001033324	235320	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0.025000	0.417910	54(GTTTTTAAAGAA,+,0.00)
mm_34190.1	chr4	140701736	140701936	+	1	NA	NA	NA	363	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.060000	0.497512	
mm_94929.1	chr11	29692220	29692420	+	1	NA	NA	NA	-578	NM_194053	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.020000	0.502488	-32(ACTTTTAGAGTC,+,0.00),75(GTCTAGAAAGGG,-,0.00)
mm_166129.1	chr4	155111191	155111391	+	1	NA	NA	NA	24714	NM_001081100	76866	Mm.200590	NM_001081100	ENSMUSG00000029049	Morn1	2900057D20Rik|4930417P05Rik|AU042805	MORN repeat containing 1	protein-coding	0.015000	0.572139	
mm_92501.1	chr10	78352006	78352206	-	1	NA	NA	NA	-406	NM_053014	28169	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.190000	0.865672	
mm_171639.1	chr4	24200807	24201007	+	1	NA	NA	NA	-295555	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.015000	0.482587	
mm_61476.1	chr7	75642643	75642843	+	1	NA	NA	NA	187209	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.015000	0.522388	
mm_135582.1	chr16	50529462	50529662	-	1	NA	NA	NA	1060	NR_040379	619312	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.075000	0.532338	
mm_109050.1	chr12	104339116	104339316	+	1	NA	NA	NA	730	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.000000	0.482587	
mm_91870.1	chr10	59469405	59469605	-	1	NA	NA	NA	-27726	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.020000	0.437811	
mm_170721.1	chr2	148875396	148875596	-	1	NA	NA	NA	16	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.075000	0.626866	
mm_164919.1	chr18	75930299	75930499	+	1	NA	NA	NA	110221	NM_145356	207259	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0.020000	0.567164	83(GCCTTTAGGCCC,+,0.00)
mm_47588.1	chr5	124861861	124862061	-	1	NA	NA	NA	260	NM_144819	215707	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.155000	0.776119	
mm_61749.1	chr7	82755625	82755825	+	1	NA	NA	NA	-81	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.025000	0.552239	
mm_159515.1	chr4	60139891	60140091	-	1	NA	NA	NA	-133	NM_001200004	100039150	Mm.237772	NM_001200004	ENSMUSG00000096674	Mup15	Gm2068|Mup13	major urinary protein 15	protein-coding	0.010000	0.368159	
mm_124044.1	chr14	77036840	77037040	-	1	NA	NA	NA	168	NM_001310649	108811	Mm.102168	NM_175369	ENSMUSG00000034795	Ccdc122	4933415L06Rik	coiled-coil domain containing 122	protein-coding	0.055000	0.567164	
mm_59734.1	chr7	28810840	28811040	+	1	NA	NA	NA	50	NM_177301	15388	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.135000	0.761194	
mm_113320.1	chr13	30764783	30764983	+	1	NA	NA	NA	15650	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.010000	0.343284	
mm_76836.1	chr8	105281333	105281533	-	1	NA	NA	NA	4986	NM_030152	78688	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0.015000	0.517413	
mm_2251.1	chr1	91068461	91068661	+	1	NA	NA	NA	15117	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.050000	0.542289	
mm_145166.1	chr18	46741817	46742017	+	1	NA	NA	NA	41	NM_001303015	11777	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	0.160000	0.830846	
mm_22870.1	chr3	28986541	28986741	+	1	NA	NA	NA	94024	NM_001033479	385263	Mm.60893	NM_001033479	ENSMUSG00000074655	Gm1527	Gm1136	predicted gene 1527	protein-coding	0.005000	0.363184	
mm_31055.1	chr4	41190895	41191095	+	1	NA	NA	NA	54974	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.015000	0.487562	-20(CCTTTTATGGAC,+,0.00)
mm_56745.1	chr6	115853268	115853468	-	1	NA	NA	NA	-27	NM_010774	17193	Mm.259308	NM_010774	ENSMUSG00000030322	Mbd4	Med1	methyl-CpG binding domain protein 4	protein-coding	0.065000	0.572139	
mm_129.1	chr1	9932000	9932200	+	1	NA	NA	NA	10443	NR_004410	266793		NR_004410	ENSMUSG00000093178	Snord87	MBII-276|Rnu87|U87	small nucleolar RNA, C/D box 87	snoRNA	0.005000	0.447761	
mm_37651.1	chr4	128806035	128806235	-	1	NA	NA	NA	-23	NM_001081098	230761	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.170000	0.810945	
mm_31497.1	chr4	53246093	53246293	+	1	NA	NA	NA	-3	NR_040665	78180	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.030000	0.487562	
mm_83548.1	chr9	46241459	46241659	-	1	NA	NA	NA	715	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.025000	0.552239	
mm_73479.1	chr8	107013850	107014050	+	1	NA	NA	NA	-17376	NM_126165	116733	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0.000000	0.313433	
mm_96660.1	chr11	69405087	69405287	+	1	NA	NA	NA	-6953	NM_025915	67020	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.015000	0.636816	
mm_60662.1	chr7	44997514	44997714	+	1	NA	NA	NA	-34	NR_045611	54131	Mm.3960	NM_016849	ENSMUSG00000003184	Irf3	C920001K05Rik|IRF-3	interferon regulatory factor 3	protein-coding	0.070000	0.557214	
mm_124264.1	chr14	102979656	102979856	-	1	NA	NA	NA	2876	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.015000	0.437811	
mm_109825.1	chr12	3862237	3862437	-	1	NA	NA	NA	-93	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.005000	0.552239	
mm_77061.1	chr8	109693121	109693321	-	1	NA	NA	NA	73	NM_028018	71955	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0.090000	0.606965	
mm_123531.1	chr14	66804781	66804981	-	1	NA	NA	NA	63719	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.010000	0.383085	
mm_126396.1	chr15	80212025	80212225	+	1	NA	NA	NA	-21955	NM_178719	239555	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.050000	0.626866	
mm_122197.1	chr14	31781332	31781532	-	1	NA	NA	NA	48983	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.015000	0.422886	
mm_83371.1	chr9	44479666	44479866	-	1	NA	NA	NA	-19370	NM_030256	80288	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.015000	0.552239	
mm_134309.1	chr16	15863168	15863368	-	1	NA	NA	NA	54	NM_029354	72083	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	0.060000	0.502488	4(CCGTTTAAAAGC,-,0.00)
mm_75671.1	chr8	67833776	67833976	-	1	NA	NA	NA	-15581	NM_027626	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.010000	0.298507	
mm_44242.1	chr5	5314518	5314718	-	1	NA	NA	NA	-48550	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.015000	0.482587	
mm_52121.1	chr6	97941047	97941247	+	1	NA	NA	NA	11330	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.035000	0.577114	
mm_111578.1	chr12	101818929	101819129	-	1	NA	NA	NA	90	NM_011812	23876	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	0.030000	0.502488	
mm_16868.1	chr2	12128444	12128644	-	1	NA	NA	NA	-172702	NR_040353	338535	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.010000	0.393035	
mm_93109.1	chr10	91082639	91082839	-	1	NA	NA	NA	4	NM_001042558	11783	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	0.145000	0.741294	
mm_118054.1	chr13	101759564	101759764	-	1	NA	NA	NA	8553	NM_001077495	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.005000	0.437811	
mm_94223.1	chr11	3202821	3203021	+	1	NA	NA	NA	-74	NM_001166547	74203	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0.155000	0.791045	
mm_148957.1	chr19	7383052	7383252	+	1	NA	NA	NA	-126	NM_001167831	68229	Mm.34766	NM_001033139	ENSMUSG00000024970	AI846148	1700105P06Rik	expressed sequence AI846148	protein-coding	0.070000	0.676617	
mm_172085.1	chr6	145932913	145933113	-	1	NA	NA	NA	-1134	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.045000	0.547264	
mm_171813.1	chr5	137300258	137300458	-	1	NA	NA	NA	-3670	NR_106003	102465627		NR_106003	ENSMUSG00000098624	Mir7036	Gm27973|mmu-mir-7036|mmu-mir-7036a	microRNA 7036	ncRNA	0.030000	0.537313	
mm_17252.1	chr2	25785584	25785784	-	1	NA	NA	NA	1067	NR_045340	620858	Mm.210572	NR_045340	ENSMUSG00000085484	Gm13539	OTTMUSG00000012632	predicted gene 13539	ncRNA	0.005000	0.482587	-99(GGCCAGAAAAGC,-,0.00)
mm_120699.1	chr14	70925798	70925998	+	1	NA	NA	NA	35791	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.085000	0.626866	
mm_79305.1	chr9	52047846	52048046	+	1	NA	NA	NA	5	NM_001104617	19684	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	0.130000	0.736318	
mm_167160.1	chr7	134883351	134883551	-	1	NA	NA	NA	54979	NM_001143802	627214	Mm.323610	NM_001143802	ENSMUSG00000073805	Fam196a	B830028B13Rik	family with sequence similarity 196, member A	protein-coding	0.015000	0.407960	
mm_31482.1	chr4	52440011	52440211	+	1	NA	NA	NA	890	NM_001301412	14211	Mm.2999	NM_008017	ENSMUSG00000028312	Smc2	5730502P04Rik|AI255214|AW545314|CAP-E|CAPE|Fin16|SMC-2|Smc2l1	structural maintenance of chromosomes 2	protein-coding	0.015000	0.273632	
mm_53843.1	chr6	148831451	148831651	+	1	NA	NA	NA	-84	NM_001081113	320727	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	0.060000	0.582090	
mm_53456.1	chr6	134830062	134830262	+	1	NA	NA	NA	-37	NM_177687	232430	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	0.065000	0.671642	
mm_144861.1	chr18	36713594	36713794	+	1	NA	NA	NA	13121	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.000000	0.422886	-61(CCTTTTAGGCAC,+,0.00)
mm_19364.1	chr2	91115651	91115851	-	1	NA	NA	NA	-2393	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.030000	0.457711	59(CTTTTTAAAAAG,+,0.00),59(CTTTTTAAAAAG,-,0.00)
mm_160673.1	chr10	7052532	7052732	-	1	NA	NA	NA	-29447	NM_001033391	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.015000	0.507463	
mm_64845.1	chr7	13014157	13014357	-	1	NA	NA	NA	-4457	NM_001024699	232879	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	0.005000	0.447761	
mm_172325.1	chr7	106644572	106644772	-	1	NA	NA	NA	-27	NM_001277182	434223	Mm.276443	NM_001277179		Gm1966	-	predicted gene 1966	protein-coding	0.005000	0.467662	
mm_117918.1	chr13	99433149	99433349	-	1	NA	NA	NA	-20423	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.050000	0.572139	
mm_135604.1	chr16	52147297	52147497	-	1	NA	NA	NA	115848	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.020000	0.467662	
mm_147134.1	chr18	36255054	36255254	-	1	NA	NA	NA	-26008	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.005000	0.512438	
mm_57859.1	chr6	129507079	129507279	-	1	NA	NA	NA	-14	NM_138648	108078	Mm.293626	NM_138648	ENSMUSG00000030162	Olr1	LOX-1|SR-EI|Scare1	oxidized low density lipoprotein (lectin-like) receptor 1	protein-coding	0.030000	0.467662	-20(GGCTATTTAAAC,-,0.00)
mm_83297.1	chr9	43239730	43239930	-	1	NA	NA	NA	-14	NM_178644	102644	Mm.246479	NM_178644	ENSMUSG00000032014	Oaf	AL024221|D130038B21Rik|D9Ucla1	out at first homolog	protein-coding	0.085000	0.631841	-93(GTCCCTTTAAGG,-,0.00),-92(TCCCTTTAAGGG,-,0.00),-91(CCCTTTAAGGGC,+,0.00),-90(CCTTTAAGGGCC,+,0.00),-66(GTCTCTTTAAGG,-,0.00)
mm_8499.1	chr1	153899635	153899835	-	1	NA	NA	NA	-191	NR_106194	102466257		NR_106194	ENSMUSG00000099227	Mir8114	Gm27382|mmu-mir-8114	microRNA 8114	ncRNA	0.055000	0.656716	
mm_3604.1	chr1	151632252	151632452	+	1	NA	NA	NA	60979	NM_022018	63913	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.010000	0.393035	
mm_97833.1	chr11	83064430	83064630	+	1	NA	NA	NA	-582	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.000000	0.412935	
mm_57937.1	chr6	134791255	134791455	-	1	NA	NA	NA	1273	NM_130447	70686	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	0.020000	0.432836	-12(GGGTTTTTAAAC,-,0.00),-10(GTTTTTAAACCT,+,0.00),40(TGCTTTTAAAGA,-,0.00),41(GCTTTTAAAGAT,+,0.00)
mm_71164.1	chr8	40518747	40518947	+	1	NA	NA	NA	-3000	NM_001271542	18983	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0.005000	0.462687	
mm_53556.1	chr6	136923942	136924142	+	1	NA	NA	NA	-1862	NM_026983	69187	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding	0.015000	0.507463	
mm_27464.1	chr3	52197967	52198167	-	1	NA	NA	NA	-70270	NM_019739	56458	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.035000	0.497512	
mm_137908.1	chr17	32036326	32036526	+	1	NA	NA	NA	264	NM_028244	72462	Mm.102761	NM_028244	ENSMUSG00000058392	Rrp1b	2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179	ribosomal RNA processing 1 homolog B (S. cerevisiae)	protein-coding	0.150000	0.731343	
mm_138815.1	chr17	39846939	39847139	+	1	NA	NA	NA	4042	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.090000	0.597015	
mm_142661.1	chr17	47690795	47690995	-	1	NA	NA	NA	-2509	NM_001164729	66119	Mm.89912	NM_025365	ENSMUSG00000033475	Tomm6	1110002E23Rik|AI663970	translocase of outer mitochondrial membrane 6 homolog (yeast)	protein-coding	0.015000	0.492537	
mm_113222.1	chr13	27059336	27059536	+	1	NA	NA	NA	1866	NM_011164	19109	Mm.1270	NM_011164	ENSMUSG00000021342	Prl	AV290867|Gha1|Prl1a1	prolactin	protein-coding	0.020000	0.442786	
mm_3003.1	chr1	133255991	133256191	+	1	NA	NA	NA	9994	NM_182930	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding	0.015000	0.522388	
mm_4881.1	chr1	187981668	187981868	+	1	NA	NA	NA	-16059	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.020000	0.363184	
mm_38036.1	chr4	133887685	133887885	-	1	NA	NA	NA	12	NM_001285505	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.140000	0.776119	
mm_110678.1	chr12	66560867	66561067	-	1	NA	NA	NA	-276566	NM_001162933	238217	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding	0.015000	0.552239	
mm_109991.1	chr12	15051527	15051727	-	1	NA	NA	NA	-1238	NR_045960	73972	Mm.107680	NR_045960		4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA	0.020000	0.522388	
mm_89340.1	chr10	87935113	87935313	+	1	NA	NA	NA	-31458	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.298507	
mm_64717.1	chr7	4656009	4656209	-	1	NA	NA	NA	2841	NM_172894	243819	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.005000	0.407960	
mm_150609.1	chr19	40840640	40840840	+	1	NA	NA	NA	9461	NM_172839	240665	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.020000	0.383085	
mm_164293.1	chr15	103895844	103896044	-	1	NA	NA	NA	3356	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.005000	0.333333	
mm_19183.1	chr2	84405283	84405483	-	1	NA	NA	NA	19883	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.000000	0.278607	
mm_141540.1	chr17	31857961	31858161	-	1	NA	NA	NA	-2269	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.010000	0.572139	
mm_34287.1	chr4	141546072	141546272	+	1	NA	NA	NA	10	NR_030695	320456	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.120000	0.711443	
mm_34750.1	chr4	152297249	152297449	+	1	NA	NA	NA	135	NM_133788	57295	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|OTTMUSG00000010406|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	0.160000	0.766169	
mm_78689.1	chr9	40802268	40802468	+	1	NA	NA	NA	1095	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.020000	0.393035	
mm_13481.1	chr2	106080899	106081099	+	1	NA	NA	NA	-77450	NR_033993	99349	Mm.25661	NM_026992	ENSMUSG00000027166	Dnajc24	1700030A21Rik|2610027M02Rik|AV066965|AW240712|Dph4|MmDjC7|Zcsl3	DnaJ heat shock protein family (Hsp40) member C24	protein-coding	0.020000	0.447761	
mm_82501.1	chr9	20449986	20450186	-	1	NA	NA	NA	10074	NM_011753	22688	Mm.107441	NM_011753	ENSMUSG00000063108	Zfp26	5033428C05Rik|KRAB15|Zfp-26|Zfp70|Zfp81-rs1|mKIAA4196|mkr-3|mszf14|mszf52	zinc finger protein 26	protein-coding	0.000000	0.278607	
mm_136477.1	chr16	95901384	95901584	-	1	NA	NA	NA	-2771	NR_040485	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.025000	0.462687	
mm_31895.1	chr4	83121422	83121622	+	1	NA	NA	NA	-69355	NM_001198811	329872	Mm.242337	NM_177863	ENSMUSG00000059049	Frem1	BC037594|D430009N09|D630008K06|crf11|eye<m02Jus>|eyes2|heb|qbrick	Fras1 related extracellular matrix protein 1	protein-coding	0.000000	0.442786	-93(GCCTTTAAAAAA,-,0.00)
mm_786.1	chr1	45332036	45332236	+	1	NA	NA	NA	20598	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.025000	0.482587	
mm_165474.1	chr2	164290178	164290378	+	1	NA	NA	NA	1010	NM_021363	64335	Mm.389393	NM_021363	ENSMUSG00000017003	Svs3a	9530026M05Rik|BB121242|Semg2|Svp-3|Svp3|Svs3	seminal vesicle secretory protein 3A	protein-coding	0.005000	0.442786	
mm_89642.1	chr10	96640787	96640987	+	1	NA	NA	NA	23886	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.020000	0.432836	
mm_110155.1	chr12	26455513	26455713	-	1	NA	NA	NA	839	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.417910	-70(CTCTTTAAAAAA,-,0.00)
mm_131639.1	chr16	20498757	20498957	+	1	NA	NA	NA	40	NM_172265	224045	Mm.233855	NM_172265	ENSMUSG00000003235	Eif2b5	C81315	eukaryotic translation initiation factor 2B, subunit 5 epsilon	protein-coding	0.080000	0.626866	
mm_70156.1	chr7	143502674	143502874	-	1	NA	NA	NA	-250	NM_009434	22113	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	0.070000	0.691542	
mm_44806.1	chr5	33274860	33275060	-	1	NA	NA	NA	44	NM_001310535	13016	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	0.200000	0.810945	
mm_61943.1	chr7	90182977	90183177	+	1	NA	NA	NA	52845	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.318408	
mm_33507.1	chr4	130913122	130913322	+	1	NA	NA	NA	-112	NM_010686	16792	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3	lysosomal-associated protein transmembrane 5	protein-coding	0.015000	0.611940	
mm_173348.1	chrY	90813083	90813283	+	1	NA	NA	NA	26223	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.507463	
mm_76939.1	chr8	105940033	105940233	-	1	NA	NA	NA	-1741	NM_013640	19171	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0.020000	0.577114	
mm_161408.1	chr15	5243609	5243809	-	1	NA	NA	NA	478	NM_001136079	19219	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.040000	0.562189	
mm_162503.1	chr1	143908138	143908338	+	1	NA	NA	NA	95911	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.000000	0.447761	
mm_163238.1	chr11	104306621	104306821	+	1	NA	NA	NA	75285	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.050000	0.606965	
mm_132972.1	chr16	52031999	52032199	+	1	NA	NA	NA	550	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.060000	0.641791	
mm_31012.1	chr4	40703195	40703395	+	1	NA	NA	NA	-101	NM_001025445	66408	Mm.430710	NM_025545	ENSMUSG00000028411	Aptx	2410016G21Rik|AA388047|FHA-HIT	aprataxin	protein-coding	0.065000	0.542289	
mm_63279.1	chr7	126764189	126764389	+	1	NA	NA	NA	-2125	NM_024228	68616	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	0.020000	0.517413	
mm_54420.1	chr6	32961964	32962164	-	1	NA	NA	NA	98088	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0.000000	0.368159	
mm_4334.1	chr1	171854951	171855151	+	1	NA	NA	NA	15354	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.283582	
mm_67895.1	chr7	99482830	99483030	-	1	NA	NA	NA	2	NR_002172	449630	Mm.454449	NR_002172	ENSMUSG00000065822	Snord15a	EG449630|Gm5774|RNU15A|Rnu15-a|U15A	small nucleolar RNA, C/D box 15A	snoRNA	0.025000	0.477612	
mm_43392.1	chr5	135776531	135776731	+	1	NA	NA	NA	1670	NM_001289554	76571	Mm.247666	NM_029659	ENSMUSG00000019178	Styxl1	1700011C14Rik|Dusp24|Mkstyx	serine/threonine/tyrosine interacting-like 1	protein-coding	0.010000	0.462687	
mm_66081.1	chr7	30956662	30956862	-	1	NA	NA	NA	41	NM_011680	22282	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0.130000	0.800995	
mm_49771.1	chr6	34866868	34867068	+	1	NA	NA	NA	3822	NM_197986	68487	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.015000	0.507463	
mm_145085.1	chr18	42440880	42441080	+	1	NA	NA	NA	46383	NM_138945	18998	Mm.488204	NM_138945	ENSMUSG00000024497	Pou4f3	Brn3.1|Brn3c|ddl|dreidel	POU domain, class 4, transcription factor 3	protein-coding	0.035000	0.497512	88(GGCTTTTTAGGA,-,0.00)
mm_151737.1	chr19	4928150	4928350	-	1	NA	NA	NA	37	NM_133803	75221	Mm.234769	NM_133803	ENSMUSG00000063904	Dpp3	4930533O14Rik|C86324	dipeptidylpeptidase 3	protein-coding	0.060000	0.621891	
mm_150756.1	chr19	43939658	43939858	+	1	NA	NA	NA	440	NM_028029	71972	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.025000	0.512438	
mm_101630.1	chr11	36181353	36181553	-	1	NA	NA	NA	-201364	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.000000	0.328358	
mm_164030.1	chr14	77156771	77156971	+	1	NA	NA	NA	108	NM_172813	239188	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	0.120000	0.731343	
mm_307.1	chr1	23773161	23773361	+	1	NA	NA	NA	11335	NM_172124	280645	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0.010000	0.477612	
mm_18287.1	chr2	52572455	52572655	-	1	NA	NA	NA	-13944	NM_001285427	12298	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.010000	0.427861	
mm_166629.1	chr6	78466740	78466940	-	1	NA	NA	NA	2034	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.005000	0.507463	
mm_109356.1	chr12	109628978	109629178	+	1	NA	NA	NA	-6934	NR_046302	449562		NR_046302	ENSMUSG00000088294	AF357425	MBII-48	snoRNA AF357425	snoRNA	0.005000	0.368159	7(CCTTTAATAGAC,+,0.00)
mm_132662.1	chr16	41974649	41974849	+	1	NA	NA	NA	328720	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0.010000	0.388060	
mm_99148.1	chr11	100553241	100553441	+	1	NA	NA	NA	7709	NM_028918	74407	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0.000000	0.527363	
mm_45266.1	chr5	64467821	64468021	-	1	NA	NA	NA	21	NR_040681	69999	Mm.261413	NR_040681	ENSMUSG00000100911	1700027F09Rik	-	RIKEN cDNA 1700027F09 gene	ncRNA	0.005000	0.422886	
mm_60091.1	chr7	34912308	34912508	+	1	NA	NA	NA	1	NM_008820	18624	Mm.69751	NM_008820	ENSMUSG00000063931	Pepd	Pep-4|Pep4|dal	peptidase D	protein-coding	0.070000	0.651741	-72(GCCCATTAAAAA,-,0.00)
mm_87000.1	chr10	26784313	26784513	+	1	NA	NA	NA	11901	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.005000	0.283582	7(CTCTTTTAAAGT,-,0.00),8(TCTTTTAAAGTA,+,0.00)
mm_77990.1	chr9	8134486	8134686	+	1	NA	NA	NA	-292	NM_001045524	234915	Mm.101341	NM_001045524	ENSMUSG00000040729	Cep126	Kiaa1377|mKIAA1377	centrosomal protein 126	protein-coding	0.060000	0.562189	
mm_82868.1	chr9	32422827	32423027	-	1	NA	NA	NA	28942	NM_001168354	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.015000	0.328358	
mm_94045.1	chr10	128176534	128176734	-	1	NA	NA	NA	-66	NM_019711	56516	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.025000	0.557214	
mm_917.1	chr1	55052757	55052957	+	1	NA	NA	NA	87	NM_001039710	67876	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	0.090000	0.681592	
mm_163092.1	chr11	69734636	69734836	-	1	NA	NA	NA	23897	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.005000	0.512438	
mm_85922.1	chr9	111461531	111461731	-	1	NA	NA	NA	22550	NM_172928	245038	Mm.26361	NM_172928	ENSMUSG00000032500	Dclk3	BC056929|C730036H08|Dcamkl3	doublecortin-like kinase 3	protein-coding	0.020000	0.502488	
mm_24944.1	chr3	96596545	96596745	+	1	NA	NA	NA	9	NM_001024851	545554	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	0.065000	0.671642	-78(GGCTATAAATAG,-,0.00)
mm_43937.1	chr5	145114190	145114390	+	1	NA	NA	NA	34	NM_023142	11867	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.130000	0.766169	
mm_44876.1	chr5	34634856	34635056	-	1	NA	NA	NA	2158	NM_026660	68294	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	0.025000	0.522388	
mm_161331.1	chr14	50533464	50533664	+	1	NA	NA	NA	150	NM_001177508	219019	Mm.480303	NM_001177508	ENSMUSG00000094285	Olfr743	GA_x6K02T2PMLR-6243196-6244132|MOR106-14|MOR106-8P|Olfr264|Olfr264-ps1|Olfr265|Olfr265-ps1|Olfr743-ps1	olfactory receptor 743	protein-coding	0.010000	0.527363	
mm_105505.1	chr11	106193395	106193595	-	1	NA	NA	NA	108	NM_001252448	72149	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	0.090000	0.661692	
mm_165655.1	chr3	85878937	85879137	+	1	NA	NA	NA	8481	NM_177130	320302	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding	0.015000	0.507463	
mm_66953.1	chr7	62314510	62314710	-	1	NA	NA	NA	-33667	NM_010882	17984	Mm.400253	NM_010882	ENSMUSG00000033585	Ndn	AI528698|Peg6	necdin	protein-coding	0.005000	0.293532	
mm_146146.1	chr18	74786992	74787192	+	1	NA	NA	NA	7880	NM_177470	52538	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	0.030000	0.442786	
mm_55474.1	chr6	68835233	68835433	-	1	NA	NA	NA	491841	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.497512	
mm_133142.1	chr16	69863737	69863937	+	1	NA	NA	NA	-93	NM_173069	224318	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0.015000	0.552239	
mm_85355.1	chr9	103214344	103214544	-	1	NA	NA	NA	-12379	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.010000	0.467662	
mm_62211.1	chr7	97870656	97870856	+	1	NA	NA	NA	27817	NM_011035	18479	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding	0.000000	0.388060	
mm_110637.1	chr12	57546600	57546800	-	1	NA	NA	NA	-579	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.060000	0.592040	
mm_72024.1	chr8	70755786	70755986	+	1	NA	NA	NA	1207	NM_001166399	19339	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0.055000	0.592040	
mm_8715.1	chr1	158980361	158980561	-	1	NA	NA	NA	-23023	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding	0.000000	0.587065	
mm_120524.1	chr14	66869187	66869387	+	1	NA	NA	NA	437	NM_001034881	432870	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	0.055000	0.616915	
mm_13830.1	chr2	119288712	119288912	+	1	NA	NA	NA	70	NM_172269	228545	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	0.060000	0.582090	
mm_37667.1	chr4	129111995	129112195	-	1	NA	NA	NA	6547	NM_001290706	66260	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.020000	0.577114	
mm_147458.1	chr18	46574411	46574611	-	1	NA	NA	NA	22	NM_173394	225471	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.035000	0.641791	
mm_38255.1	chr4	136785691	136785891	-	1	NA	NA	NA	50221	NM_001290753	13844	Mm.250981	NM_010142	ENSMUSG00000028664	Ephb2	Cek5|Drt|ETECK|Erk|Hek5|Nuk|Prkm5|Qek5|Sek3|Tyro5	Eph receptor B2	protein-coding	0.000000	0.407960	-67(GTCTTTAAAAAA,-,0.00)
mm_110.1	chr1	9601242	9601442	+	1	NA	NA	NA	75	NM_178399	76982	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	0.020000	0.393035	
mm_93097.1	chr10	89732189	89732389	-	1	NA	NA	NA	6	NM_025914	67019	Mm.335292	NM_025914	ENSMUSG00000019948	Actr6	2010200J04Rik|AU044443|Arp6|ArpX|CDA12	ARP6 actin-related protein 6	protein-coding	0.085000	0.552239	
mm_27005.1	chr3	25847266	25847466	-	1	NA	NA	NA	305941	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.452736	
mm_49744.1	chr6	34745875	34746075	+	1	NA	NA	NA	-34457	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.010000	0.467662	
mm_13096.1	chr2	91256788	91256988	+	1	NA	NA	NA	75	NM_001289678	80708	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	0.080000	0.731343	
mm_126574.1	chr15	82256205	82256405	+	1	NA	NA	NA	282	NR_037698	76505	Mm.23023	NR_037697	ENSMUSG00000068099	1500009C09Rik	-	RIKEN cDNA 1500009C09 gene	ncRNA	0.035000	0.601990	
mm_101357.1	chr11	23740083	23740283	-	1	NA	NA	NA	30787	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.005000	0.363184	
mm_19779.1	chr2	106970271	106970471	-	1	NA	NA	NA	20	NM_173750	212772	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	0.000000	0.417910	
mm_76923.1	chr8	105933770	105933970	-	1	NA	NA	NA	-8	NM_023182	109660	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.005000	0.532338	
mm_94197.1	chr11	3101166	3101366	+	1	NA	NA	NA	-22755	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.020000	0.393035	
mm_21813.1	chr2	165234620	165234820	-	1	NA	NA	NA	17	NM_174988	104010	Mm.151819	NM_174988	ENSMUSG00000053166	Cdh22	-	cadherin 22	protein-coding	0.105000	0.696517	
mm_44792.1	chr5	32354748	32354948	-	1	NA	NA	NA	1268	NM_172147	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0.030000	0.502488	
mm_62563.1	chr7	103918858	103919058	+	1	NA	NA	NA	3896	NM_001271020	258961	Mm.438897	NM_146959	ENSMUSG00000042219	Olfr631	MOR3-1	olfactory receptor 631	protein-coding	0.005000	0.368159	
mm_166777.1	chr6	137545135	137545335	+	1	NA	NA	NA	-25340	NM_001271589	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.010000	0.462687	-32(TCTTTTAGGGAC,+,0.00)
mm_157641.1	chrX	57224236	57224436	-	1	NA	NA	NA	12193	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.010000	0.487562	
mm_86127.1	chr9	116175224	116175424	-	1	NA	NA	NA	39	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.115000	0.696517	
mm_122724.1	chr14	52316028	52316228	-	1	NA	NA	NA	195	NM_001244916	50524	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding	0.095000	0.696517	
mm_5889.1	chr1	54195100	54195300	-	1	NA	NA	NA	-166	NM_172655	329152	Mm.132150	NM_172655	ENSMUSG00000042807	Hecw2	A730039N16Rik|D030049F17Rik|Gm971|Nedl2|mKIAA1301	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.075000	0.651741	
mm_65444.1	chr7	25395436	25395636	-	1	NA	NA	NA	451	NM_010719	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.075000	0.616915	48(CAGCTTAAAAGA,-,0.00)
mm_105491.1	chr11	106098148	106098348	-	1	NA	NA	NA	13346	NM_011947	26406	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.000000	0.338308	
mm_12270.1	chr2	68979362	68979562	+	1	NA	NA	NA	118021	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.005000	0.373134	
mm_22354.1	chr2	180954559	180954759	-	1	NA	NA	NA	40	NM_001141933	58237	Mm.40361	NM_021426	ENSMUSG00000027574	Nkain4	AB030182|C030019F02Rik	Na+/K+ transporting ATPase interacting 4	protein-coding	0.065000	0.631841	
mm_115814.1	chr13	19732643	19732843	-	1	NA	NA	NA	208	NM_175688	319293	Mm.246657	NM_175688	ENSMUSG00000047462	A530099J19Rik	-	RIKEN cDNA A530099J19 gene	protein-coding	0.025000	0.477612	
mm_145188.1	chr18	49772709	49772909	+	1	NA	NA	NA	-17208	NM_001170960	68857	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0.020000	0.383085	
mm_149276.1	chr19	10605536	10605736	+	1	NA	NA	NA	11	NM_015735	13194	Mm.289915	NM_015735	ENSMUSG00000024740	Ddb1	127kDa|AA408517|p127-Ddb1	damage specific DNA binding protein 1	protein-coding	0.100000	0.646766	
mm_111760.1	chr12	103958842	103959042	-	1	NA	NA	NA	-2045	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	0.010000	0.582090	
mm_89418.1	chr10	90875043	90875243	+	1	NA	NA	NA	45300	NM_001347053	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.005000	0.532338	
mm_26968.1	chr3	24547014	24547214	-	1	NA	NA	NA	236892	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.000000	0.248756	
mm_18411.1	chr2	60553210	60553410	-	1	NA	NA	NA	-2	NM_008867	18779	Mm.5092	NM_008867	ENSMUSG00000054580	Pla2r1	Pla2-r|Pla2g1br|Pla2r	phospholipase A2 receptor 1	protein-coding	0.055000	0.606965	
mm_94451.1	chr11	6389332	6389532	+	1	NA	NA	NA	-5693	NM_001005867	52915	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.195000	0.835821	
mm_1371.1	chr1	66468145	66468345	+	1	NA	NA	NA	-202	NM_175510	329178	Mm.44798	NM_175510	ENSMUSG00000055567	Unc80	C030018G13Rik|C230061B10Rik|UNC-80	unc-80, NALCN activator	protein-coding	0.130000	0.786070	
mm_152992.1	chr19	29787209	29787409	-	1	NA	NA	NA	18700	NM_172836	240613	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	ENSMUSG00000048936|Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	0.000000	0.293532	
mm_140533.1	chr17	6754733	6754933	-	1	NA	NA	NA	27947	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.055000	0.567164	
mm_114160.1	chr13	55412175	55412375	+	1	NA	NA	NA	2957	NM_029303	75477	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	0.020000	0.582090	
mm_24581.1	chr3	93444692	93444892	+	1	NA	NA	NA	2462	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.070000	0.621891	
mm_56894.1	chr6	119110859	119111059	-	1	NA	NA	NA	-2464	NM_001256002	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.010000	0.393035	
mm_96526.1	chr11	68496614	68496814	+	1	NA	NA	NA	-6305	NM_001004435	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.000000	0.482587	
mm_87138.1	chr10	34300750	34300950	+	1	NA	NA	NA	3429	NM_030203	72480	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	0.010000	0.477612	
mm_138835.1	chr17	39848375	39848575	+	1	NA	NA	NA	5478	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.145000	0.706468	
mm_102764.1	chr11	67922074	67922274	-	1	NA	NA	NA	-21	NM_173754	216835	Mm.158885	NM_173754	ENSMUSG00000020905	Usp43	-	ubiquitin specific peptidase 43	protein-coding	0.145000	0.820896	
mm_115433.1	chr13	117264343	117264543	+	1	NA	NA	NA	43870	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.020000	0.393035	
mm_123774.1	chr14	70289370	70289570	-	1	NA	NA	NA	27	NM_008915	19057	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	0.185000	0.776119	
mm_120093.1	chr14	57889895	57890095	+	1	NA	NA	NA	267	NM_029492	75965	Mm.29044	NM_029492	ENSMUSG00000021969	Zdhhc20	4930542A17Rik|5033406L14Rik|AI448102|B230110O18Rik|ENSMUSG00000055956|HK11	zinc finger, DHHC domain containing 20	protein-coding	0.150000	0.756219	
mm_46459.1	chr5	105118222	105118422	-	1	NA	NA	NA	-8030	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.005000	0.358209	
mm_57437.1	chr6	124917847	124918047	-	1	NA	NA	NA	-1	NM_026988	69202	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	0.135000	0.766169	-33(CGCCTTAAAAGC,-,0.00),-32(GCCTTAAAAGCG,+,0.00),-31(CCTTAAAAGCGG,+,0.00)
mm_50971.1	chr6	61179888	61180088	+	1	NA	NA	NA	-337	NM_001164316	232035	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding	0.035000	0.487562	-38(CTGTTTAAAGGG,-,0.00)
mm_14874.1	chr2	148799782	148799982	+	1	NA	NA	NA	1043	NM_009978	13012	Mm.20435	NM_009978	ENSMUSG00000027442	Cst8	Cres|Cst-rs1	cystatin 8 (cystatin-related epididymal spermatogenic)	protein-coding	0.015000	0.447761	
mm_67860.1	chr7	99020336	99020536	-	1	NA	NA	NA	120708	NM_178635	78610	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.005000	0.472637	
mm_121555.1	chr14	122479626	122479826	+	1	NA	NA	NA	4342	NM_009574	22772	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0.020000	0.363184	
mm_6170.1	chr1	65073432	65073632	-	1	NA	NA	NA	0	NM_007775	12966	Mm.491115	NM_007775	ENSMUSG00000025952	Crygc	Cryg-5	crystallin, gamma C	protein-coding	0.040000	0.537313	
mm_108091.1	chr12	74296595	74296795	+	1	NA	NA	NA	-779	NM_198866	386753	Mm.341686	NM_198866	ENSMUSG00000029878	Dbpht2	Spot2	DNA binding protein with his-thr domain	protein-coding	0.010000	0.343284	
mm_19278.1	chr2	85518951	85519151	-	1	NA	NA	NA	-116	NM_001081664	228151	Mm.17636	NM_001081664	ENSMUSG00000075217	4833423E24Rik	Fads2p1|Gm113	RIKEN cDNA 4833423E24 gene	protein-coding	0.005000	0.507463	
mm_131142.1	chr16	6349032	6349232	+	1	NA	NA	NA	373545	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA	0.075000	0.631841	
mm_102130.1	chr11	53430355	53430555	-	1	NA	NA	NA	376	NM_025352	22272	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	0.090000	0.616915	
mm_1721.1	chr1	75360248	75360448	+	1	NA	NA	NA	56	NM_010043	13346	Mm.6712	NM_010043	ENSMUSG00000026208	Des	-	desmin	protein-coding	0.070000	0.681592	
mm_113762.1	chr13	44766522	44766722	+	1	NA	NA	NA	35351	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.000000	0.273632	
mm_51539.1	chr6	83195869	83196069	+	1	NA	NA	NA	10023	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.035000	0.621891	
mm_82298.1	chr9	7836938	7837138	-	1	NA	NA	NA	19	NM_007465	11797	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.110000	0.696517	
mm_22202.1	chr2	173578094	173578294	-	1	NA	NA	NA	147	NM_001199955	70065	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	0.105000	0.711443	
mm_64883.1	chr7	15879790	15879990	-	1	NA	NA	NA	65	NM_007770	12951	Mm.441911	NM_007770	ENSMUSG00000041578	Crx	Crx1	cone-rod homeobox	protein-coding	0.015000	0.547264	
mm_114608.1	chr13	75839813	75840013	+	1	NA	NA	NA	27	NM_053108	93692	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.020000	0.522388	-92(GCCCTTTAAAAC,-,0.00),-90(CCTTTAAAACTG,+,0.00)
mm_166007.1	chr4	117272056	117272256	+	1	NA	NA	NA	17299	NM_001310730	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.005000	0.537313	
mm_52402.1	chr6	113327133	113327333	+	1	NA	NA	NA	257	NM_010957	18294	Mm.43612	NM_010957	ENSMUSG00000030271	Ogg1	Mmh	8-oxoguanine DNA-glycosylase 1	protein-coding	0.050000	0.587065	
mm_128273.1	chr15	36794156	36794356	-	1	NA	NA	NA	282	NM_011740	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.095000	0.641791	73(AGCCTTAAAAGG,-,0.00),74(GCCTTAAAAGGT,+,0.00),75(CCTTAAAAGGTC,+,0.00)
mm_152012.1	chr19	5964071	5964271	-	1	NA	NA	NA	35	NM_001164057	18969	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0.110000	0.641791	
mm_35950.1	chr4	53116141	53116341	-	1	NA	NA	NA	43654	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.000000	0.512438	58(GTCCATTTAAGA,-,0.00)
mm_5584.1	chr1	39552211	39552411	-	1	NA	NA	NA	-3471	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.000000	0.323383	
mm_50786.1	chr6	54039427	54039627	+	1	NA	NA	NA	-405	NM_001163640	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.100000	0.711443	
mm_130997.1	chr15	103446558	103446758	-	1	NA	NA	NA	1801	NM_177631	223927	Mm.243718	NM_177631	ENSMUSG00000053508	BC048502	-	cDNA sequence BC048502	protein-coding	0.055000	0.611940	
mm_167251.1	chr8	24725751	24725951	-	1	NA	NA	NA	1	NM_009619	11497	Mm.5168	NM_009619	ENSMUSG00000031553	Adam3	Cyrn1|Taz83|tMDC	a disintegrin and metallopeptidase domain 3 (cyritestin)	protein-coding	0.040000	0.601990	
mm_12474.1	chr2	71528443	71528643	+	1	NA	NA	NA	-902	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.035000	0.477612	
mm_4391.1	chr1	172341213	172341413	+	1	NA	NA	NA	103	NM_001039484	16513	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	0.090000	0.711443	
mm_2289.1	chr1	91413298	91413498	+	1	NA	NA	NA	-176	NM_019479	55927	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	0.055000	0.651741	
mm_57585.1	chr6	127154638	127154838	-	1	NA	NA	NA	-3690	NM_009829	12444	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.045000	0.552239	
mm_88219.1	chr10	70293427	70293627	+	1	NA	NA	NA	48251	NM_025807	66859	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.015000	0.547264	
mm_28703.1	chr3	95545431	95545631	-	1	NA	NA	NA	-14146	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.040000	0.532338	
mm_80150.1	chr9	70928044	70928244	+	1	NA	NA	NA	6664	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.005000	0.378109	
mm_119637.1	chr14	51893555	51893755	+	1	NA	NA	NA	45	NM_001039676	214922	Mm.281343	NM_001039676	ENSMUSG00000072572	Slc39a2	F730005G13Rik|Gm1789|Gm289|Zip2	solute carrier family 39 (zinc transporter), member 2	protein-coding	0.015000	0.547264	
mm_166255.1	chr5	87254709	87254909	-	1	NA	NA	NA	-21	NM_053215	112417	Mm.160362	NM_053215	ENSMUSG00000057425	Ugt2b37	0610033E06Rik	UDP glucuronosyltransferase 2 family, polypeptide B37	protein-coding	0.000000	0.412935	
mm_118833.1	chr14	25607675	25607875	+	1	NA	NA	NA	4262	NM_001309430	100188919	Mm.473810	NM_001309430		Israa	-	immune system released activating agent	protein-coding	0.145000	0.771144	
mm_648.1	chr1	40427429	40427629	+	1	NA	NA	NA	-2041	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.015000	0.417910	
mm_10888.1	chr2	25263105	25263305	+	1	NA	NA	NA	607	NM_175286	97031	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0.120000	0.711443	
mm_51807.1	chr6	88733484	88733684	+	1	NA	NA	NA	8880	NM_001166251	23945	Mm.272197	NM_011844	ENSMUSG00000033174	Mgll	AA589436|Magl|Mgl	monoglyceride lipase	protein-coding	0.035000	0.597015	
mm_101122.1	chr11	12027866	12028066	-	1	NA	NA	NA	5	NM_001177629	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.030000	0.452736	
mm_166236.1	chr5	67847208	67847408	-	1	NA	NA	NA	123	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.125000	0.776119	
mm_77457.1	chr8	121907586	121907786	-	1	NA	NA	NA	0	NM_011404	20539	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	0.155000	0.721393	
mm_32663.1	chr4	115096054	115096254	+	1	NA	NA	NA	7446	NM_001164557	67182	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	0.060000	0.601990	
mm_112014.1	chr12	110987038	110987238	-	1	NA	NA	NA	-7260	NR_036598	77878	Mm.293198	NR_036598		6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	0.025000	0.507463	-60(GCCCATTTATGG,-,0.00),-58(CCATTTATGGAC,+,0.00)
mm_110268.1	chr12	31950456	31950656	-	1	NA	NA	NA	-21	NM_153198	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.045000	0.507463	
mm_168369.1	chr11	18327489	18327689	-	1	NA	NA	NA	231603	NR_131129	327872		NR_131129	ENSMUSG00000085453	Gm12018	OTTMUSG00000005202	predicted gene 12018	ncRNA	0.015000	0.417910	
mm_151595.1	chr19	3440799	3440999	-	1	NA	NA	NA	-26355	NM_010253	14419	Mm.4655	NM_010253	ENSMUSG00000024907	Gal	Galn	galanin	protein-coding	0.020000	0.572139	
mm_57508.1	chr6	125463627	125463827	-	1	NA	NA	NA	31028	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.030000	0.507463	
mm_122125.1	chr14	31155455	31155655	-	1	NA	NA	NA	13086	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.005000	0.492537	
mm_121883.1	chr14	21714459	21714659	-	1	NA	NA	NA	17	NM_001013826	435391	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0.015000	0.557214	
mm_131403.1	chr16	14373537	14373737	+	1	NA	NA	NA	12079	NM_008576	17250	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.040000	0.497512	
mm_8450.1	chr1	152902668	152902868	-	1	NA	NA	NA	-122	NM_001005507	226517	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.070000	0.706468	
mm_131026.1	chr16	3723223	3723423	+	1	NA	NA	NA	-5199	NM_001161791	54483	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.005000	0.527363	
mm_39165.1	chr4	155624653	155624853	-	1	NA	NA	NA	2	NR_040441	100502734	Mm.306018	NR_040441	ENSMUSG00000086682	Gm16023	OTTMUSG00000029160	predicted gene 16023	ncRNA	0.130000	0.592040	
mm_91078.1	chr10	19011805	19012005	-	1	NA	NA	NA	58	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.005000	0.417910	-91(ATCTTTAAAAGT,-,0.00),-90(TCTTTAAAAGTG,+,0.00)
mm_29019.1	chr3	101924293	101924493	-	1	NA	NA	NA	60	NM_001039371	242126	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	0.120000	0.726368	
mm_24723.1	chr3	95281275	95281475	+	1	NA	NA	NA	701	NM_173347	229589	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	0.080000	0.676617	
mm_130896.1	chr15	102398581	102398781	-	1	NA	NA	NA	-7635	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.010000	0.462687	64(GAGTTTAAAAGA,-,0.00)
mm_168805.1	chr12	20614944	20615144	+	1	NA	NA	NA	200735	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.105000	0.736318	
mm_63009.1	chr7	120940538	120940738	+	1	NA	NA	NA	22894	NM_001164096	26939	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0.025000	0.601990	
mm_95366.1	chr11	49076493	49076693	+	1	NA	NA	NA	6	NM_001271677	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.020000	0.447761	
mm_137312.1	chr17	24885867	24886067	+	1	NA	NA	NA	383	NM_011956	26426	Mm.36718	NM_011956	ENSMUSG00000039183	Nubp2	D17Wsu11e	nucleotide binding protein 2	protein-coding	0.050000	0.512438	
mm_27022.1	chr3	26046336	26046536	-	1	NA	NA	NA	106871	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.393035	
mm_154525.1	chrM	13370	13570	-	1	NA	NA	NA	NA	NA									0.010000	0.323383	
mm_5563.1	chr1	38836539	38836739	-	1	NA	NA	NA	-15424	NM_001029878	381338	Mm.487137	NM_028403	ENSMUSG00000048814	Lonrf2	2900060P06Rik|AI851349	LON peptidase N-terminal domain and ring finger 2	protein-coding	0.135000	0.701493	
mm_29823.1	chr3	129613808	129614008	-	1	NA	NA	NA	81522	NM_130450	170439	Mm.314113	NM_130450	ENSMUSG00000041220	Elovl6	C77826|FAE|LCE	ELOVL family member 6, elongation of long chain fatty acids (yeast)	protein-coding	0.015000	0.472637	
mm_164140.1	chr15	57975596	57975796	-	1	NA	NA	NA	-10207	NM_173862	239463	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.055000	0.651741	
mm_86619.1	chr10	13965788	13965988	+	1	NA	NA	NA	-491	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.080000	0.636816	
mm_85736.1	chr9	108490434	108490634	-	1	NA	NA	NA	-142	NM_001168372	71472	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	0.040000	0.552239	
mm_99365.1	chr11	101732859	101733059	+	1	NA	NA	NA	3	NM_144831	217207	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	0.080000	0.572139	
mm_95751.1	chr11	54902656	54902856	+	1	NA	NA	NA	-98	NM_001329860	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.045000	0.577114	
mm_155619.1	chrX	83376252	83376452	+	1	NA	NA	NA	111572	NM_021898	100502723	Mm.383210	NM_021898	ENSMUSG00000035522	Tsga8	Halap-X|Halapx	testis specific gene A8	protein-coding	0.000000	0.273632	-62(ACCTTTATGGGC,+,0.00)
mm_125788.1	chr15	74721114	74721314	+	1	NA	NA	NA	-20	NM_198607	223626	Mm.268603	NM_198607	ENSMUSG00000056665	Them6	4930572J05Rik	thioesterase superfamily member 6	protein-coding	0.060000	0.676617	
mm_56250.1	chr6	90757367	90757567	-	1	NA	NA	NA	-40938	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.015000	0.616915	
mm_46217.1	chr5	98854990	98855190	-	1	NA	NA	NA	675	NM_001310677	110075	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0.095000	0.671642	
mm_118571.1	chr14	19133010	19133210	+	1	NA	NA	NA	-239483	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0.005000	0.462687	-36(TTCTTTATAAGC,-,0.00)
mm_86821.1	chr10	20952540	20952740	+	1	NA	NA	NA	93	NM_026203	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.140000	0.741294	
mm_140133.1	chr17	79622718	79622918	+	1	NA	NA	NA	7918	NM_201361	381110	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.025000	0.467662	
mm_18294.1	chr2	52676516	52676716	-	1	NA	NA	NA	-7	NM_001037099	12298	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.045000	0.577114	
mm_15146.1	chr2	153986386	153986586	+	1	NA	NA	NA	11541	NM_001080811	545477	Mm.379973	NM_001080811	ENSMUSG00000078998	Bpifa6	EG545477|Gm5840|Splunc6	BPI fold containing family A, member 6	protein-coding	0.015000	0.522388	
mm_113768.1	chr13	44836986	44837186	+	1	NA	NA	NA	105815	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.025000	0.358209	
mm_4931.1	chr1	191097746	191097946	+	1	NA	NA	NA	-568	NM_030060	381319	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.085000	0.691542	
mm_42823.1	chr5	122093482	122093682	+	1	NA	NA	NA	-7398	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.040000	0.597015	
mm_37135.1	chr4	116820784	116820984	-	1	NA	NA	NA	624	NM_146256	242642	Mm.279897	NM_146256	ENSMUSG00000043155	Hpdl	A830048M07Rik|BC034099|Gloxd1	4-hydroxyphenylpyruvate dioxygenase-like	protein-coding	0.060000	0.631841	
mm_9634.1	chr1	176835845	176836045	-	1	NA	NA	NA	188	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0.010000	0.512438	
mm_134868.1	chr16	28668702	28668902	-	1	NA	NA	NA	-68759	NR_030463	751543		NR_030463	ENSMUSG00000076064	Mir690	Mirn690|mir-690|mmu-mir-690	microRNA 690	ncRNA	0.010000	0.383085	
mm_29224.1	chr3	107212750	107212950	-	1	NA	NA	NA	8882	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.472637	
mm_32118.1	chr4	99031067	99031267	+	1	NA	NA	NA	213	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.015000	0.378109	79(CTTTTTATGACC,+,0.00)
mm_140526.1	chr17	6743715	6743915	-	1	NA	NA	NA	37985	NM_183368	83672	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0.025000	0.512438	
mm_59955.1	chr7	30427028	30427228	+	1	NA	NA	NA	3824	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.025000	0.547264	
mm_166640.1	chr6	83506994	83507194	+	1	NA	NA	NA	-125	NM_001162521	27369	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0.050000	0.512438	
mm_8280.1	chr1	140018775	140018975	-	1	NA	NA	NA	-160176	NM_001025575	545366	Mm.439660	NM_001025575	ENSMUSG00000033898	Cfhr2	Cfhrb_4/2	complement factor H-related 2	protein-coding	0.005000	0.407960	
mm_42730.1	chr5	120621325	120621525	+	1	NA	NA	NA	8295	NM_028041	71990	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0.020000	0.517413	
mm_148391.1	chr19	3651942	3652142	+	1	NA	NA	NA	34522	NM_008513	16973	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0.020000	0.532338	
mm_38356.1	chr4	137796256	137796456	-	1	NA	NA	NA	28	NM_007431	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.115000	0.791045	
mm_127751.1	chr15	103479037	103479237	+	1	NA	NA	NA	-23897	NM_008800	18574	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.000000	0.477612	13(GACCTTAAAAAA,-,0.00),15(CCTTAAAAAAGG,+,0.00)
mm_141340.1	chr17	28517434	28517634	-	1	NA	NA	NA	-13327	NM_026290	67645	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.035000	0.567164	
mm_17154.1	chr2	25218561	25218761	-	1	NA	NA	NA	-84	NM_026624	68222	Mm.227260	NM_026624	ENSMUSG00000026969	Fam166a	4931415M17	family with sequence similarity 166, member A	protein-coding	0.000000	0.547264	
mm_70124.1	chr7	143079470	143079670	-	1	NA	NA	NA	10202	NM_001115085	56844	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.010000	0.462687	
mm_132386.1	chr16	34952450	34952650	+	1	NA	NA	NA	6314	NR_045722	278725	Mm.436927	NR_045722		E130310I04Rik	A930019C19Rik	RIKEN cDNA E130310I04 gene	ncRNA	0.010000	0.432836	
mm_52782.1	chr6	121252844	121253044	+	1	NA	NA	NA	7038	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.005000	0.442786	
mm_20970.1	chr2	151973176	151973376	-	1	NA	NA	NA	118	NM_001289151	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.045000	0.552239	
mm_1135.1	chr1	60596560	60596760	+	1	NA	NA	NA	-29895	NM_001045513	77300	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0.030000	0.457711	
mm_85604.1	chr9	107576729	107576929	-	1	NA	NA	NA	-98	NM_008317	15586	Mm.475658	NM_008317	ENSMUSG00000010051	Hyal1	Hya1|Hyal-1	hyaluronoglucosaminidase 1	protein-coding	0.025000	0.567164	
mm_61132.1	chr7	55926340	55926540	+	1	NA	NA	NA	36053	NM_001256133	93790	Mm.37249	NM_023647	ENSMUSG00000030452	Nipa2	2600017P10Rik|3830408P04Rik|AB041581	non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)	protein-coding	0.025000	0.512438	
mm_142396.1	chr17	45433389	45433589	-	1	NA	NA	NA	218	NM_152810	71702	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0.085000	0.626866	
mm_72980.1	chr8	92901357	92901557	+	1	NA	NA	NA	62	NM_027112	69543	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	0.025000	0.542289	
mm_91052.1	chr10	18789374	18789574	-	1	NA	NA	NA	-2681	NM_177706	237300	Mm.444821	NM_177706	ENSMUSG00000044624	Gm4922	4933423E17|EG237300	predicted gene 4922	protein-coding	0.010000	0.412935	
mm_116119.1	chr13	28950409	28950609	-	1	NA	NA	NA	3173	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.025000	0.358209	
mm_80242.1	chr9	72735082	72735282	+	1	NA	NA	NA	-72092	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.015000	0.487562	
mm_116463.1	chr13	43435113	43435313	-	1	NA	NA	NA	36837	NM_023554	70078	Mm.439927	NM_023554	ENSMUSG00000063200	Nol7	2210008F15Rik|5730556I21Rik|NOP27|RARG-1	nucleolar protein 7	protein-coding	0.000000	0.343284	
mm_68281.1	chr7	105599606	105599806	-	1	NA	NA	NA	410	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.010000	0.412935	34(GTTCTTTAAAGG,-,0.00)
mm_57203.1	chr6	122850811	122851011	-	1	NA	NA	NA	5246	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.025000	0.487562	
mm_120523.1	chr14	66847774	66847974	+	1	NA	NA	NA	20726	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.020000	0.547264	
mm_128429.1	chr15	50309780	50309980	-	1	NA	NA	NA	579169	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.005000	0.497512	
mm_119782.1	chr14	54181432	54181632	+	1	NA	NA	NA	72397	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.437811	
mm_126870.1	chr15	89373816	89374016	+	1	NA	NA	NA	-98	NM_001111288	100126824	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	0.065000	0.626866	
mm_131346.1	chr16	13671788	13671988	+	1	NA	NA	NA	30	NM_025653	67118	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	0.080000	0.641791	
mm_38858.1	chr4	149426260	149426460	-	1	NA	NA	NA	271	NM_022022	63958	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0.080000	0.701493	-83(TGCTTTTAGAGG,-,0.00),-82(GCTTTTAGAGGG,+,0.00)
mm_21542.1	chr2	163750120	163750320	-	1	NA	NA	NA	19	NM_007398	11486	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0.105000	0.736318	
mm_54564.1	chr6	37442066	37442266	-	1	NA	NA	NA	-18	NM_178661	208647	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.040000	0.557214	
mm_38618.1	chr4	141952839	141953039	-	1	NA	NA	NA	-30053	NR_040672	545691	Mm.332015	NR_040672	ENSMUSG00000085424	Fhad1os1	Gm13037|OTTMUSG00000010113	forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1	ncRNA	0.025000	0.492537	55(CCTTTAAAACGT,+,0.00)
mm_94100.1	chr10	128562789	128562989	-	1	NA	NA	NA	3045	NM_011119	18813	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	0.015000	0.462687	
mm_9196.1	chr1	171222414	171222614	-	1	NA	NA	NA	0	NM_001037170	641376	Mm.288374	NM_001037170	ENSMUSG00000005674	Tomm40l	-	translocase of outer mitochondrial membrane 40 homolog-like (yeast)	protein-coding	0.020000	0.507463	
mm_21990.1	chr2	167643452	167643652	-	1	NA	NA	NA	-11547	NM_023230	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.010000	0.611940	
mm_57393.1	chr6	124840099	124840299	-	1	NA	NA	NA	76	NM_013530	14695	Mm.68889	NM_013530	ENSMUSG00000023439	Gnb3	Gnb-3	guanine nucleotide binding protein (G protein), beta 3	protein-coding	0.015000	0.611940	
mm_148412.1	chr19	3935125	3935325	+	1	NA	NA	NA	39	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.040000	0.621891	
mm_42148.1	chr5	111418938	111419138	+	1	NA	NA	NA	872	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.055000	0.631841	
mm_74463.1	chr8	4216931	4217131	-	1	NA	NA	NA	281	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.070000	0.646766	
mm_113282.1	chr13	30136506	30136706	+	1	NA	NA	NA	116	NM_153546	218121	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	0.090000	0.716418	
mm_89711.1	chr10	97714678	97714878	+	1	NA	NA	NA	6	NR_130992	78127	Mm.376175	NR_130992		4930525C09Rik	-	RIKEN cDNA 4930525C09 gene	ncRNA	0.015000	0.527363	
mm_106805.1	chr12	5643041	5643241	+	1	NA	NA	NA	266639	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	0.015000	0.572139	
mm_99498.1	chr11	102885067	102885267	+	1	NA	NA	NA	-2	NM_025766	66784	Mm.483216	NM_025766	ENSMUSG00000075510	Fam187a	4933439F11Rik	family with sequence similarity 187, member A	protein-coding	0.030000	0.512438	
mm_166887.1	chr7	28085260	28085460	+	1	NA	NA	NA	14124	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.020000	0.572139	
mm_155853.1	chrX	101276577	101276777	+	1	NA	NA	NA	2586	NM_021521	59024	Mm.20873	NM_021521	ENSMUSG00000079487	Med12	230kDa|Mopa|OPA-1|Tnrc11|Trap230	mediator complex subunit 12	protein-coding	0.020000	0.487562	-100(CTATTTAGAGGG,+,0.00)
mm_137905.1	chr17	31930464	31930664	+	1	NA	NA	NA	-74772	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.010000	0.547264	-34(GCCTATTTAAGG,-,0.00)
mm_51656.1	chr6	86089587	86089787	+	1	NA	NA	NA	11639	NM_001271859	11519	Mm.104155	NM_013458	ENSMUSG00000030000	Add2	2900072M03Rik|add97	adducin 2 (beta)	protein-coding	0.005000	0.437811	
mm_140352.1	chr17	86831219	86831419	+	1	NA	NA	NA	77455	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.005000	0.388060	
mm_128386.1	chr15	43090332	43090532	-	1	NA	NA	NA	80386	NM_172815	239405	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.000000	0.213930	
mm_85576.1	chr9	107289646	107289846	-	1	NA	NA	NA	131	NM_178907	102626	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0.080000	0.631841	-100(CCCTTTAAGGTT,+,0.00)
mm_100477.1	chr11	120164683	120164883	+	1	NA	NA	NA	-13432	NM_001164798	72055	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0.020000	0.597015	
mm_842.1	chr1	51594150	51594350	+	1	NA	NA	NA	-115851	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.020000	0.517413	-34(AGCTATAAAAGC,-,0.00)
mm_145922.1	chr18	67088140	67088340	+	1	NA	NA	NA	-58	NM_177137	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.055000	0.626866	
mm_157470.1	chrX	47892414	47892614	-	1	NA	NA	NA	38	NM_053123	93761	Mm.229151	NM_053123	ENSMUSG00000031099	Smarca1	5730494M04Rik|Snf2l	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding	0.050000	0.621891	
mm_9094.1	chr1	169046774	169046974	-	1	NA	NA	NA	484590	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0.015000	0.487562	
mm_50440.1	chr6	48872748	48872948	+	1	NA	NA	NA	-22407	NM_029638	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.015000	0.492537	
mm_90982.1	chr10	13553061	13553261	-	1	NA	NA	NA	-19	NM_001347361	56535	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	0.120000	0.681592	
mm_58966.1	chr7	18987421	18987621	+	1	NA	NA	NA	-3	NM_194064	378430	Mm.277153	NM_194064	ENSMUSG00000051965	Nanos2	nos2	nanos homolog 2 (Drosophila)	protein-coding	0.005000	0.537313	-33(GTATTTATAAGG,-,0.00)
mm_6101.1	chr1	64030071	64030271	-	1	NA	NA	NA	12330	NR_105864	102466760		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.000000	0.477612	
mm_152534.1	chr19	11327011	11327211	-	1	NA	NA	NA	7584	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.000000	0.492537	
mm_28705.1	chr3	95556082	95556282	-	1	NA	NA	NA	-3495	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.015000	0.368159	
mm_90467.1	chr10	127776340	127776540	+	1	NA	NA	NA	35	NM_153133	103142	Mm.235814	NM_153133	ENSMUSG00000056148	Rdh9	AI121090|Crad3	retinol dehydrogenase 9	protein-coding	0.010000	0.497512	
mm_42109.1	chr5	110565488	110565688	+	1	NA	NA	NA	21233	NM_198306	231605	Mm.275748	NM_198306	ENSMUSG00000033316	Galnt9	GalNAc-T9	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9	protein-coding	0.005000	0.567164	
mm_86250.1	chr9	121454642	121454842	-	1	NA	NA	NA	40952	NM_001284508	12424	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.020000	0.527363	
mm_43610.1	chr5	137985286	137985486	+	1	NA	NA	NA	3865	NM_013478	12007	Mm.30061	NM_013478	ENSMUSG00000037053	Azgp1	Zag	alpha-2-glycoprotein 1, zinc	protein-coding	0.015000	0.502488	
mm_76121.1	chr8	80861010	80861210	-	1	NA	NA	NA	19369	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.020000	0.542289	
mm_33805.1	chr4	134931123	134931323	+	1	NA	NA	NA	243	NM_026780	68592	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0.095000	0.706468	
mm_167445.1	chr8	121796388	121796588	-	1	NA	NA	NA	33081	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.025000	0.557214	
mm_76284.1	chr8	84197842	84198042	-	1	NA	NA	NA	-10576	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.040000	0.606965	
mm_22807.1	chr3	27153926	27154126	+	1	NA	NA	NA	0	NR_040548	76657	Mm.417839	NR_040548	ENSMUSG00000097584	1700125G22Rik	-	RIKEN cDNA 1700125G22 gene	ncRNA	0.085000	0.592040	
mm_156875.1	chrX	166170381	166170581	+	1	NA	NA	NA	27	NM_001310724	237221	Mm.209490	NM_146238	ENSMUSG00000040621	Gemin8	B130034M20Rik|B930082C09Rik|BC023488|gemin-8	gem (nuclear organelle) associated protein 8	protein-coding	0.065000	0.646766	
mm_117467.1	chr13	76018465	76018665	-	1	NA	NA	NA	-3	NM_178916	218341	Mm.266515	NM_178916	ENSMUSG00000043190	Rfesd	AI256775|D030068K09	Rieske (Fe-S) domain containing	protein-coding	0.085000	0.651741	
mm_43923.1	chr5	144768462	144768662	+	1	NA	NA	NA	-230	NM_001081362	100683	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0.110000	0.686567	
mm_107112.1	chr12	17992774	17992974	+	1	NA	NA	NA	302060	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.130000	0.761194	
mm_120269.1	chr14	63122811	63123011	+	1	NA	NA	NA	449	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.040000	0.572139	-36(GAGCTTAAAGGG,-,0.00)
mm_104482.1	chr11	95574299	95574499	-	1	NA	NA	NA	13299	NM_033217	18053	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	0.040000	0.626866	
mm_66868.1	chr7	57312994	57313194	-	1	NA	NA	NA	73777	NM_008074	14407	Mm.434343	NM_008074	ENSMUSG00000055026	Gabrg3	B230362M20Rik|Gabrg-3	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3	protein-coding	0.005000	0.333333	
mm_128994.1	chr15	74838941	74839141	-	1	NA	NA	NA	2602	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.015000	0.542289	
mm_1739.1	chr1	75440917	75441117	+	1	NA	NA	NA	5074	NM_133708	69080	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	0.005000	0.537313	
mm_39583.1	chr5	23478948	23479148	+	1	NA	NA	NA	44619	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.005000	0.338308	-75(TTCTTTAAAAGG,-,0.00),-74(TCTTTAAAAGGT,+,0.00)
mm_13174.1	chr2	92915037	92915237	+	1	NA	NA	NA	36	NM_030725	80976	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	0.100000	0.721393	
mm_113700.1	chr13	43135157	43135357	+	1	NA	NA	NA	12418	NM_001005748	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.025000	0.388060	
mm_139893.1	chr17	70851250	70851450	+	1	NA	NA	NA	-140	NM_009372	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.085000	0.731343	
mm_78894.1	chr9	44608440	44608640	+	1	NA	NA	NA	3648	NM_181324	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.000000	0.368159	
mm_120570.1	chr14	69040591	69040791	+	1	NA	NA	NA	11402	NM_009285	20855	Mm.20911	NM_009285	ENSMUSG00000014813	Stc1	Stc	stanniocalcin 1	protein-coding	0.000000	0.378109	
mm_12109.1	chr2	61590075	61590275	+	1	NA	NA	NA	-2922	NM_001164072	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.015000	0.358209	
mm_102779.1	chr11	68386857	68387057	-	1	NA	NA	NA	-131	NM_008744	18208	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0.165000	0.796020	
mm_10195.1	chr2	4925508	4925708	+	1	NA	NA	NA	6612	NM_010726	16922	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.015000	0.333333	
mm_83550.1	chr9	46242321	46242521	-	1	NA	NA	NA	1577	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.030000	0.552239	
mm_97741.1	chr11	80465412	80465612	+	1	NA	NA	NA	-11534	NM_009871	12569	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0.045000	0.537313	
mm_24243.1	chr3	89136058	89136258	+	1	NA	NA	NA	16	NM_013631	18770	Mm.383180	NM_013631	ENSMUSG00000041237	Pklr	Pk-1|Pk1|R-PK	pyruvate kinase liver and red blood cell	protein-coding	0.005000	0.527363	
mm_40756.1	chr5	66898337	66898537	+	1	NA	NA	NA	-69979	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.005000	0.542289	
mm_146959.1	chr18	33213707	33213907	-	1	NA	NA	NA	55	NM_001347624	170459	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	0.085000	0.661692	
mm_152021.1	chr19	6015757	6015957	-	1	NA	NA	NA	-32	NM_001110504	12333	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	0.055000	0.661692	
mm_57828.1	chr6	129464330	129464530	-	1	NA	NA	NA	8349	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.010000	0.338308	
mm_72789.1	chr8	86888310	86888510	+	1	NA	NA	NA	-3152	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.010000	0.477612	
mm_67786.1	chr7	97549684	97549884	-	1	NA	NA	NA	29713	NM_001177945	66273	Mm.41583	NM_183251	ENSMUSG00000035642	Aamdc	1810020D17Rik|1810037D19Rik|LI2	adipogenesis associated Mth938 domain containing	protein-coding	0.025000	0.502488	
mm_134638.1	chr16	21762483	21762683	-	1	NA	NA	NA	25251	NM_023737	74147	Mm.28100	NM_023737	ENSMUSG00000022853	Ehhadh	1300002P22Rik|HD|L-PBE|LBFP|LBP|MFP|MFP1|PBFE	enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	protein-coding	0.025000	0.542289	
mm_13910.1	chr2	120501132	120501332	+	1	NA	NA	NA	24323	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.035000	0.592040	
mm_20414.1	chr2	129300449	129300649	-	1	NA	NA	NA	3179	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.005000	0.398010	
mm_81616.1	chr9	110769649	110769849	+	1	NA	NA	NA	6068	NM_010859	17897	Mm.7353	NM_010859	ENSMUSG00000059741	Myl3	MLC1s|MLC1v|Mylc|VLC1	myosin, light polypeptide 3	protein-coding	0.005000	0.517413	
mm_87675.1	chr10	59085667	59085867	+	1	NA	NA	NA	136080	NM_001024911	103080	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	0.025000	0.661692	
mm_141704.1	chr17	33999399	33999599	-	1	NA	NA	NA	834	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.125000	0.691542	
mm_60658.1	chr7	44929669	44929869	+	1	NA	NA	NA	-279	NM_001077264	11771	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	0.085000	0.606965	
mm_118400.1	chr13	119408039	119408239	-	1	NA	NA	NA	872	NM_008710	18115	Mm.132584	NM_008710	ENSMUSG00000025453	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.015000	0.552239	84(AGCTTTTAAAAG,-,0.00),85(GCTTTTAAAAGC,+,0.00),85(GCTTTTAAAAGC,-,0.00),86(CTTTTAAAAGCA,+,0.00)
mm_13273.1	chr2	99734726	99734926	+	1	NA	NA	NA	-1889922	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.000000	0.358209	-76(CTTTTTATATAG,+,0.00)
mm_50022.1	chr6	41118401	41118601	+	1	NA	NA	NA	-82992	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.020000	0.487562	
mm_8173.1	chr1	137898298	137898498	-	1	NA	NA	NA	-68057	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.000000	0.462687	
mm_139489.1	chr17	56081373	56081573	+	1	NA	NA	NA	1842	NM_001304785	15193	Mm.12966	NM_008233	ENSMUSG00000002833	Hdgfrp2	HRP-2	hepatoma-derived growth factor, related protein 2	protein-coding	0.005000	0.562189	
mm_40270.1	chr5	39307028	39307228	+	1	NA	NA	NA	296446	NR_045416	75095	Mm.332354	NR_045416	ENSMUSG00000106741	4930513D17Rik	-	RIKEN cDNA 4930513D17 gene	ncRNA	0.000000	0.398010	52(CCTTATATAACT,+,0.00)
mm_44705.1	chr5	30625386	30625586	-	1	NA	NA	NA	-22450	NR_049199	100885838		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.015000	0.492537	
mm_171242.1	chr3	74765572	74765772	-	1	NA	NA	NA	378100	NM_001310529	213234	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding	0.030000	0.462687	
mm_99300.1	chr11	101367454	101367654	+	1	NA	NA	NA	-162	NM_008061	14377	Mm.18064	NM_008061	ENSMUSG00000078650	G6pc	AW107337|G6Pase|G6pt|Glc-6-Pase	glucose-6-phosphatase, catalytic	protein-coding	0.010000	0.427861	
mm_90628.1	chr10	128459489	128459689	+	1	NA	NA	NA	353	NM_001114097	68094	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	0.150000	0.870647	
mm_170946.1	chr2	52089475	52089675	+	1	NA	NA	NA	16738	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.005000	0.402985	-62(CTCTCTTAAAGG,-,0.00)
mm_25924.1	chr3	131184578	131184778	+	1	NA	NA	NA	71887	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.050000	0.557214	
mm_128636.1	chr15	59082209	59082409	-	1	NA	NA	NA	-283	NM_144800	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.105000	0.716418	
mm_133281.1	chr16	77421553	77421753	+	1	NA	NA	NA	92325	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.035000	0.502488	
mm_68974.1	chr7	126585708	126585908	-	1	NA	NA	NA	9	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.015000	0.592040	
mm_2299.1	chr1	91500731	91500931	+	1	NA	NA	NA	6163	NM_028718	74019	Mm.318430	NM_028718	ENSMUSG00000034292	Traf3ip1	3930402D05Rik|AU041749|MIP-T3	TRAF3 interacting protein 1	protein-coding	0.035000	0.557214	
mm_53882.1	chr6	3345791	3345991	-	1	NA	NA	NA	53680	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.000000	0.288557	-5(TCCTTTTAAAAG,-,0.00),-4(CCTTTTAAAAGA,+,0.00),-4(CCTTTTAAAAGA,-,0.00),-3(CTTTTAAAAGAT,+,0.00)
mm_74827.1	chr8	23181322	23181522	-	1	NA	NA	NA	27031	NM_018743	102247	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	0.000000	0.343284	-97(GTTTTTATAGTG,+,0.00)
mm_69269.1	chr7	127926815	127927015	-	1	NA	NA	NA	3198	NM_133351	76560	Mm.5875	NM_133351	ENSMUSG00000030800	Prss8	2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1	protease, serine 8 (prostasin)	protein-coding	0.025000	0.572139	
mm_8300.1	chr1	143776906	143777106	-	1	NA	NA	NA	45	NM_013835	20822	Mm.40370	NM_013835	ENSMUSG00000018199	Trove2	1810007I17Rik|A530054J02Rik|AI646302|SS-A/Ro|Ssa|Ssa2	TROVE domain family, member 2	protein-coding	0.095000	0.701493	
mm_22647.1	chr3	14868294	14868494	+	1	NA	NA	NA	4856	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.005000	0.447761	
mm_23689.1	chr3	68691404	68691604	+	1	NA	NA	NA	80	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.030000	0.537313	
mm_92984.1	chr10	86695431	86695631	-	1	NA	NA	NA	9913	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.015000	0.457711	
mm_72088.1	chr8	71579331	71579531	+	1	NA	NA	NA	10504	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.065000	0.636816	
mm_157555.1	chrX	52052185	52052385	-	1	NA	NA	NA	-79513	NM_028851	74279	Mm.159154	NM_028851	ENSMUSG00000031118	1700080O16Rik	-	RIKEN cDNA 1700080O16 gene	protein-coding	0.010000	0.412935	
mm_45262.1	chr5	63968784	63968984	-	1	NA	NA	NA	13	NM_145923	100532	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0.115000	0.751244	
mm_98089.1	chr11	86593166	86593366	+	1	NA	NA	NA	-9108	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.447761	
mm_18656.1	chr2	69799588	69799788	-	1	NA	NA	NA	9951	NM_028521	73373	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	0.025000	0.422886	
mm_9284.1	chr1	171634548	171634748	-	1	NA	NA	NA	7252	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.437811	
mm_61281.1	chr7	66839638	66839838	+	1	NA	NA	NA	3	NM_001033877	233332	Mm.445763	NM_001033877	ENSMUSG00000058145	Adamts17	AU023434	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17	protein-coding	0.045000	0.552239	
mm_139342.1	chr17	50181147	50181347	+	1	NA	NA	NA	9250	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.010000	0.452736	4(TCTTATAGAGAA,+,0.00)
mm_62117.1	chr7	96647562	96647762	+	1	NA	NA	NA	153887	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA	0.010000	0.572139	
mm_149007.1	chr19	8723895	8724095	+	1	NA	NA	NA	508	NR_002896	83673	Mm.292489	NR_002896	ENSMUSG00000108414	Snhg1	-	small nucleolar RNA host gene 1	ncRNA	0.015000	0.482587	
mm_154289.1	chr19	60874466	60874666	-	1	NA	NA	NA	-28	NM_007452	11757	Mm.29821	NM_007452	ENSMUSG00000024997	Prdx3	AW822249|Aop1|D0Tohi1|Ef2l|Mer5|Prx3|SP22|TDXM	peroxiredoxin 3	protein-coding	0.065000	0.636816	
mm_158663.1	chrX	157491971	157492171	-	1	NA	NA	NA	-25	NM_009214	20603	Mm.18652	NM_009214	ENSMUSG00000071708	Sms	AI427066|Gy|SPMSY|SpmST|gyro	spermine synthase	protein-coding	0.115000	0.761194	-69(TCCTCTAAGAGG,-,0.00),-68(CCTCTAAGAGGC,+,0.00)
mm_78279.1	chr9	22101043	22101243	+	1	NA	NA	NA	1890	NM_009922	12797	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	0.035000	0.611940	
mm_106405.1	chr11	118909756	118909956	-	1	NA	NA	NA	-284	NM_001039167	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.040000	0.666667	
mm_68748.1	chr7	121064591	121064791	-	1	NA	NA	NA	9839	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.010000	0.412935	
mm_117137.1	chr13	60940130	60940330	-	1	NA	NA	NA	1705	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding	0.015000	0.407960	-30(TCTCATAAAAGC,-,0.00)
mm_14695.1	chr2	141611725	141611925	+	1	NA	NA	NA	-940349	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.005000	0.512438	
mm_71288.1	chr8	40926143	40926343	+	1	NA	NA	NA	10	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.040000	0.547264	
mm_161718.1	chr17	25965323	25965523	-	1	NA	NA	NA	82	NM_015830	50817	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	0.040000	0.567164	
mm_62668.1	chr7	108950554	108950754	+	1	NA	NA	NA	16239	NM_025344	66085	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0.115000	0.756219	
mm_61568.1	chr7	79710292	79710492	+	1	NA	NA	NA	3794	NM_010626	16576	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0.140000	0.691542	
mm_171084.1	chr3	122276227	122276427	+	1	NA	NA	NA	1913	NM_153806	99480	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	0.020000	0.512438	
mm_139259.1	chr17	47749007	47749207	+	1	NA	NA	NA	11176	NM_001161723	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.025000	0.606965	
mm_64316.1	chr7	141864914	141865114	+	1	NA	NA	NA	25942	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.015000	0.517413	
mm_172680.1	chr8	51943746	51943946	-	1	NA	NA	NA	-1567856	NM_001205054	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.030000	0.512438	-32(GAGTATATAAGA,-,0.00)
mm_135842.1	chr16	58555651	58555851	-	1	NA	NA	NA	-32439	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.030000	0.537313	
mm_3979.1	chr1	164249160	164249360	+	1	NA	NA	NA	214	NM_001276455	116914	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA	solute carrier family 19 (thiamine transporter), member 2	protein-coding	0.145000	0.756219	
mm_81807.1	chr9	117252440	117252640	+	1	NA	NA	NA	-57	NM_001172126	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.010000	0.532338	
mm_116429.1	chr13	41847491	41847691	-	1	NA	NA	NA	25	NM_001145875	109254	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.025000	0.532338	
mm_138901.1	chr17	43568597	43568797	+	1	NA	NA	NA	246	NM_013737	27226	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.040000	0.567164	
mm_137749.1	chr17	29394319	29394519	+	1	NA	NA	NA	33505	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.010000	0.482587	
mm_37570.1	chr4	126242021	126242221	-	1	NA	NA	NA	14198	NM_144941	245877	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0.015000	0.641791	
mm_91540.1	chr10	39534668	39534868	-	1	NA	NA	NA	-78166	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.010000	0.532338	-37(GCTTTAAAACCC,+,0.00)
mm_152421.1	chr19	10674816	10675016	-	1	NA	NA	NA	3155	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.030000	0.562189	
mm_57918.1	chr6	133851990	133852190	-	1	NA	NA	NA	1577	NM_010594	16483	Mm.13052	NM_010594	ENSMUSG00000032758	Kap	AW146435|FKSG22	kidney androgen regulated protein	protein-coding	0.000000	0.363184	
mm_41197.1	chr5	88328062	88328262	+	1	NA	NA	NA	10850	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.010000	0.512438	
mm_66726.1	chr7	46179881	46180081	-	1	NA	NA	NA	52	NM_011510	20927	Mm.259076	NM_011510	ENSMUSG00000040136	Abcc8	D930031B21Rik|SUR1|Sur	ATP-binding cassette, sub-family C (CFTR/MRP), member 8	protein-coding	0.120000	0.776119	
mm_111369.1	chr12	87236899	87237099	-	1	NA	NA	NA	1602	NM_027744	71275	Mm.79198	NM_027744	ENSMUSG00000072919	Noxred1	4933437F05Rik	NADP+ dependent oxidoreductase domain containing 1	protein-coding	0.010000	0.388060	
mm_147369.1	chr18	43438189	43438389	-	1	NA	NA	NA	-3	NM_001291455	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.075000	0.681592	
mm_71128.1	chr8	36538141	36538341	+	1	NA	NA	NA	49050	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding	0.000000	0.477612	
mm_90751.1	chr10	5488178	5488378	-	1	NA	NA	NA	36	NM_001347711	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.015000	0.507463	
mm_52643.1	chr6	117178694	117178894	+	1	NA	NA	NA	10259	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.010000	0.417910	
mm_27112.1	chr3	30942365	30942565	-	1	NA	NA	NA	26950	NM_001165954	241915	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic-like 3 (Drosophila)	protein-coding	0.025000	0.492537	
mm_72286.1	chr8	75117519	75117719	+	1	NA	NA	NA	8110	NM_008566	17218	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0.020000	0.562189	
mm_45780.1	chr5	87296167	87296367	-	1	NA	NA	NA	40928	NM_028094	72094	Mm.482739	NM_028094	ENSMUSG00000035780	Ugt2a3	2010321J07Rik	UDP glucuronosyltransferase 2 family, polypeptide A3	protein-coding	0.015000	0.407960	
mm_148859.1	chr19	6399774	6399974	+	1	NA	NA	NA	-709	NM_011242	19395	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.140000	0.815920	
mm_121085.1	chr14	99226070	99226270	+	1	NA	NA	NA	-72521	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.020000	0.477612	
mm_128799.1	chr15	66831547	66831747	-	1	NA	NA	NA	182	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.015000	0.487562	
mm_28465.1	chr3	90695277	90695477	-	1	NA	NA	NA	344	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.000000	0.412935	
mm_70447.1	chr8	11756087	11756287	+	1	NA	NA	NA	-2143	NM_017402	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.015000	0.402985	
mm_114420.1	chr13	64370353	64370553	+	1	NA	NA	NA	67	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.090000	0.666667	
mm_28236.1	chr3	88455662	88455862	-	1	NA	NA	NA	-1	NM_013658	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.025000	0.616915	
mm_115159.1	chr13	107063628	107063828	+	1	NA	NA	NA	41158	NR_015471	100040322	Mm.133867	NR_015471		3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.010000	0.393035	
mm_106185.1	chr11	116749823	116750023	-	1	NA	NA	NA	-2244	NR_003364	193217	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	0.030000	0.507463	
mm_68225.1	chr7	104434669	104434869	-	1	NA	NA	NA	30424	NM_009099	20128	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.005000	0.378109	31(GCTTTTATATCA,+,0.00)
mm_26990.1	chr3	25712296	25712496	-	1	NA	NA	NA	440911	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.472637	-17(CACCATAAGAGG,-,0.00)
mm_65993.1	chr7	30552186	30552386	-	1	NA	NA	NA	-14	NM_183321	333193	Mm.34885	NM_183321	ENSMUSG00000036864	Proser3	-	proline and serine rich 3	protein-coding	0.070000	0.557214	
mm_92435.1	chr10	77182695	77182895	-	1	NA	NA	NA	-16265	NM_009929	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.010000	0.472637	
mm_89512.1	chr10	94147896	94148096	+	1	NA	NA	NA	65	NM_011629	22025	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	0.095000	0.696517	
mm_106120.1	chr11	116359335	116359535	-	1	NA	NA	NA	-24081	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.025000	0.502488	
mm_13767.1	chr2	118560341	118560541	+	1	NA	NA	NA	-10755	NM_138313	171543	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.005000	0.338308	
mm_38681.1	chr4	145024644	145024844	-	1	NA	NA	NA	131607	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.015000	0.412935	-7(TTTTTTAAAGAG,+,0.00)
mm_2737.1	chr1	128252107	128252307	+	1	NA	NA	NA	8026	NM_026390	67812	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0.000000	0.328358	
mm_36483.1	chr4	82885050	82885250	-	1	NA	NA	NA	1	NM_009887	12622	Mm.6780	NM_009887	ENSMUSG00000038192	Cer1	Cerl|Cerl1|Cerr1|cer-1	cerberus 1, DAN family BMP antagonist	protein-coding	0.015000	0.522388	12(TCTTTTAGGCCC,+,0.00)
mm_79561.1	chr9	58079270	58079470	+	1	NA	NA	NA	22855	NM_029212	382077	Mm.335193	NM_029212	ENSMUSG00000037716	Ccdc33	4930535E21Rik|Gm1117|Tzip1	coiled-coil domain containing 33	protein-coding	0.010000	0.482587	
mm_3201.1	chr1	135818670	135818870	+	1	NA	NA	NA	172	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding	0.155000	0.791045	
mm_5337.1	chr1	24005527	24005727	-	1	NA	NA	NA	13	NM_026503	68002	Mm.250424	NM_026503	ENSMUSG00000026154	Sdhaf4	1110058L19Rik|1700001E18Rik|C6orf57	succinate dehydrogenase complex assembly factor 4	protein-coding	0.100000	0.666667	
mm_154547.1	chrM	14754	14954	-	1	NA	NA	NA	NA	NA									0.000000	0.378109	
mm_55883.1	chr6	83527270	83527470	-	1	NA	NA	NA	8881	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.015000	0.582090	
mm_95551.1	chr11	52307762	52307962	+	1	NA	NA	NA	-24848	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.010000	0.542289	
mm_76876.1	chr8	105565928	105566128	-	1	NA	NA	NA	12	NM_013477	11972	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0.110000	0.701493	
mm_137594.1	chr17	28123941	28124141	+	1	NA	NA	NA	-18485	NM_001004366	268935	Mm.258491	NM_001004366	ENSMUSG00000038677	Scube3	CEGF3|D030038I21Rik	signal peptide, CUB domain, EGF-like 3	protein-coding	0.030000	0.611940	
mm_120686.1	chr14	70774246	70774446	+	1	NA	NA	NA	-35	NM_010071	13449	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip	docking protein 2	protein-coding	0.015000	0.492537	
mm_93720.1	chr10	119239408	119239608	-	1	NA	NA	NA	547	NM_027994	71902	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	0.105000	0.776119	
mm_129629.1	chr15	80219758	80219958	-	1	NA	NA	NA	-14222	NM_178719	239555	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.000000	0.492537	-35(GCACATAAAAGC,-,0.00)
mm_115515.1	chr13	5804542	5804742	-	1	NA	NA	NA	53450	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.020000	0.422886	
mm_31241.1	chr4	44756592	44756792	+	1	NA	NA	NA	133	NM_138590	319885	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	0.120000	0.681592	
mm_112517.1	chr13	9127851	9128051	+	1	NA	NA	NA	34070	NM_172585	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.015000	0.442786	
mm_144540.1	chr18	25839008	25839208	+	1	NA	NA	NA	-85125	NM_001174074	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.005000	0.442786	
mm_72219.1	chr8	72688361	72688561	+	1	NA	NA	NA	-34809	NM_001113248	20467	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0.000000	0.522388	
mm_2651.1	chr1	125676768	125676968	+	1	NA	NA	NA	-128	NM_027677	71111	Mm.32727	NM_027677	ENSMUSG00000026343	Gpr39	4933415E13Rik	G protein-coupled receptor 39	protein-coding	0.015000	0.572139	
mm_51924.1	chr6	91265867	91266067	+	1	NA	NA	NA	53203	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.025000	0.592040	
mm_68942.1	chr7	126503343	126503543	-	1	NA	NA	NA	-141	NM_183020	233871	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.165000	0.766169	
mm_102794.1	chr11	68825219	68825419	-	1	NA	NA	NA	27812	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.005000	0.452736	
mm_85350.1	chr9	103210544	103210744	-	1	NA	NA	NA	-8579	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.020000	0.447761	
mm_10588.1	chr2	18307858	18308058	+	1	NA	NA	NA	84872	NM_001190817	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.010000	0.412935	
mm_105437.1	chr11	104352286	104352486	-	1	NA	NA	NA	89905	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.000000	0.313433	
mm_40791.1	chr5	67453368	67453568	+	1	NA	NA	NA	-10430	NR_110363	320479	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	0.030000	0.512438	
mm_33914.1	chr4	136424482	136424682	+	1	NA	NA	NA	-30	NM_001285484	15552	Mm.40573	NM_008309	ENSMUSG00000070687	Htr1d	5-HT-1D|5-HT1D|AI853647|Gpcr14|Htr1db	5-hydroxytryptamine (serotonin) receptor 1D	protein-coding	0.115000	0.800995	
mm_62940.1	chr7	118937022	118937222	+	1	NA	NA	NA	58089	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.005000	0.532338	
mm_61438.1	chr7	75060592	75060792	+	1	NA	NA	NA	30481	NR_131122	75205	Mm.399304	NR_131122	ENSMUSG00000108803	4930533N22Rik	-	RIKEN cDNA 4930533N22 gene	ncRNA	0.005000	0.293532	
mm_21659.1	chr2	164404741	164404941	-	1	NA	NA	NA	-23	NM_013592	17183	Mm.29428	NM_013592	ENSMUSG00000016995	Matn4	matrilin-4	matrilin 4	protein-coding	0.080000	0.681592	
mm_49421.1	chr6	29216387	29216587	+	1	NA	NA	NA	-123	NM_001302934	23917	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine 5'-phosphate dehydrogenase 1	protein-coding	0.040000	0.597015	
mm_160616.1	chr9	88839210	88839410	+	1	NA	NA	NA	146	NM_001177858	666731	Mm.446951	NM_001177858	ENSMUSG00000067399	Trim43c	EG666731|Trim43	tripartite motif-containing 43C	protein-coding	0.000000	0.472637	-43(GTCTTTAGAGAC,+,0.00)
mm_98601.1	chr11	95831231	95831431	+	1	NA	NA	NA	6831	NM_153104	237928	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.065000	0.592040	
mm_172073.1	chr6	140738606	140738806	-	1	NA	NA	NA	111821	NM_001309436	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.030000	0.482587	
mm_144370.1	chr18	20510180	20510380	+	1	NA	NA	NA	6	NM_030596	13512	Mm.106811	NM_030596	ENSMUSG00000056632	Dsg3	bal	desmoglein 3	protein-coding	0.005000	0.542289	
mm_58584.1	chr7	4925735	4925935	+	1	NA	NA	NA	-9	NM_173008	269855	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	0.000000	0.691542	
mm_121429.1	chr14	120326610	120326810	+	1	NA	NA	NA	51041	NM_175341	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding	0.000000	0.497512	
mm_130418.1	chr15	98074187	98074387	-	1	NA	NA	NA	-18302	NM_001163488	18642	Mm.272582	NM_021514	ENSMUSG00000033065	Pfkm	AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx	phosphofructokinase, muscle	protein-coding	0.005000	0.393035	
mm_108272.1	chr12	78861583	78861783	+	1	NA	NA	NA	-45	NM_023721	73834	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	0.080000	0.656716	
mm_6004.1	chr1	58973245	58973445	-	1	NA	NA	NA	137	NM_172406	70827	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	0.090000	0.681592	
mm_142962.1	chr17	56120740	56120940	-	1	NA	NA	NA	1106	NM_029796	76905	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0.035000	0.606965	
mm_14931.1	chr2	151542411	151542611	+	1	NA	NA	NA	28	NM_001302078	14225	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.120000	0.691542	
mm_159064.1	chr2	20967631	20967831	-	1	NA	NA	NA	-10	NM_001128084	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.040000	0.537313	
mm_25360.1	chr3	107091316	107091516	+	1	NA	NA	NA	-10151	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.010000	0.472637	
mm_56403.1	chr6	97148819	97149019	-	1	NA	NA	NA	-36	NM_175313	101351	Mm.116802	NM_175313	ENSMUSG00000035245	Eogt	A130022J15Rik|AI447490|AW214473|AW259391|Aer61	EGF domain-specific O-linked N-acetylglucosamine (GlcNAc) transferase	protein-coding	0.125000	0.746269	
mm_85366.1	chr9	103220848	103221048	-	1	NA	NA	NA	9338	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.030000	0.552239	
mm_95943.1	chr11	58384624	58384824	+	1	NA	NA	NA	4078	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.020000	0.552239	
mm_44740.1	chr5	31192937	31193137	-	1	NA	NA	NA	102	NM_001127355	13667	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	0.060000	0.626866	
mm_156644.1	chrX	157699024	157699224	+	1	NA	NA	NA	151	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.020000	0.482587	
mm_73798.1	chr8	117274592	117274792	+	1	NA	NA	NA	17673	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.015000	0.542289	
mm_118873.1	chr14	25857484	25857684	+	1	NA	NA	NA	15429	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.015000	0.557214	
mm_35444.1	chr4	40234319	40234519	-	1	NA	NA	NA	5406	NM_172689	230073	Mm.86382	NM_172689	ENSMUSG00000040296	Ddx58	6430573D20Rik|C330021E21|RIG-I|RLR-1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 58	protein-coding	0.005000	0.527363	
mm_133680.1	chr16	92423640	92423840	+	1	NA	NA	NA	-23662	NM_019466	54720	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.020000	0.492537	
mm_145619.1	chr18	61105808	61106008	+	1	NA	NA	NA	336	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.030000	0.577114	
mm_40495.1	chr5	57717567	57717767	+	1	NA	NA	NA	252	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	0.045000	0.522388	
mm_31116.1	chr4	42950363	42950563	+	1	NA	NA	NA	-2631	NM_019874	56323	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.025000	0.567164	
mm_142606.1	chr17	46812082	46812282	-	1	NA	NA	NA	19231	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.005000	0.442786	
mm_118144.1	chr13	105054687	105054887	-	1	NA	NA	NA	143	NM_029879	52882	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.085000	0.646766	
mm_94329.1	chr11	4266435	4266635	+	1	NA	NA	NA	-261	NM_001039537	16878	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.025000	0.502488	
mm_65880.1	chr7	29556418	29556618	-	1	NA	NA	NA	-51058	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.005000	0.537313	
mm_152948.1	chr19	28990812	28991012	-	1	NA	NA	NA	560	NM_025950	67072	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	0.040000	0.567164	
mm_131382.1	chr16	14163197	14163397	+	1	NA	NA	NA	22	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.115000	0.671642	
mm_114505.1	chr13	70650045	70650245	+	1	NA	NA	NA	-12511	NM_144837	218333	Mm.139738	NM_144837	ENSMUSG00000034525	Ice1	C77245|mKIAA0947	interactor of little elongation complex ELL subunit 1	protein-coding	0.000000	0.567164	
mm_91175.1	chr10	20724936	20725136	-	1	NA	NA	NA	42	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.060000	0.656716	
mm_22390.1	chr2	181202421	181202621	-	1	NA	NA	NA	268	NM_009184	20459	Mm.4497	NM_009184	ENSMUSG00000038751	Ptk6	BRK|Sik|Tksk|tks	PTK6 protein tyrosine kinase 6	protein-coding	0.005000	0.547264	
mm_99911.1	chr11	109845767	109845967	+	1	NA	NA	NA	-11	NR_045909	73257	Mm.250442	NR_045909	ENSMUSG00000087393	1700023C21Rik	-	RIKEN cDNA 1700023C21 gene	ncRNA	0.020000	0.477612	
mm_55484.1	chr6	69043445	69043645	-	1	NA	NA	NA	283629	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.348259	-26(TTGTTTTAAAGC,-,0.00)
mm_40111.1	chr5	34827396	34827596	+	1	NA	NA	NA	65756	NM_010414	15194	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	0.005000	0.388060	-48(CCTTTTATGTTG,+,0.00)
mm_46460.1	chr5	105118256	105118456	-	1	NA	NA	NA	-8064	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.015000	0.373134	
mm_136974.1	chr17	15754939	15755139	+	1	NA	NA	NA	50072	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.060000	0.477612	7(GAATATTAAAGG,-,0.00)
mm_154091.1	chr19	56815719	56815919	-	1	NA	NA	NA	-2136	NM_170757	213993	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0.025000	0.442786	
mm_147515.1	chr18	52518395	52518595	-	1	NA	NA	NA	11226	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.020000	0.432836	
mm_95416.1	chr11	50038941	50039141	+	1	NA	NA	NA	13710	NM_001290750	59044	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.000000	0.388060	36(GCATTTAGGGAG,+,0.00)
mm_74230.1	chr8	124231396	124231596	+	1	NA	NA	NA	102	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0.200000	0.805970	
mm_15941.1	chr2	165810173	165810373	+	1	NA	NA	NA	47900	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.010000	0.547264	
mm_100206.1	chr11	116852102	116852302	+	1	NA	NA	NA	892	NM_011358	20382	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0.110000	0.646766	
mm_153553.1	chr19	42128857	42129057	-	1	NA	NA	NA	36	NM_027106	69534	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0.085000	0.636816	
mm_128872.1	chr15	73030726	73030926	-	1	NA	NA	NA	24986	NM_029640	76510	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.015000	0.507463	
mm_94491.1	chr11	6680273	6680473	+	1	NA	NA	NA	-20137	NR_028586	100041311	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	OTTMUSG00000005125|OTTMUSG00000005127	predicted gene 11978	pseudo	0.010000	0.522388	
mm_91795.1	chr10	53379782	53379982	-	1	NA	NA	NA	-31	NM_001204983	100038725	Mm.441403	NM_001204983	ENSMUSG00000038594	Cep85l	ENSMUSG00000038594|Gm9766	centrosomal protein 85-like	protein-coding	0.090000	0.731343	
mm_86913.1	chr10	23787327	23787527	+	1	NA	NA	NA	-218	NM_011295	20042	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	0.075000	0.547264	
mm_42448.1	chr5	115434880	115435080	+	1	NA	NA	NA	5295	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.025000	0.577114	
mm_123449.1	chr14	65174855	65175055	-	1	NA	NA	NA	-76849	NM_018788	54616	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.035000	0.517413	
mm_108922.1	chr12	100779048	100779248	+	1	NA	NA	NA	25	NM_145448	217830	Mm.218590	NM_145448	ENSMUSG00000021185	9030617O03Rik	-	RIKEN cDNA 9030617O03 gene	protein-coding	0.020000	0.601990	
mm_98113.1	chr11	87109163	87109363	+	1	NA	NA	NA	2	NM_025377	66140	Mm.45008	NM_025377	ENSMUSG00000020492	Ska2	1110001A07Rik|C78640|Fam33a	spindle and kinetochore associated complex subunit 2	protein-coding	0.040000	0.522388	
mm_35793.1	chr4	46534499	46534699	-	1	NA	NA	NA	1542	NM_029077	74735	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	0.060000	0.661692	
mm_44697.1	chr5	30407987	30408187	-	1	NA	NA	NA	53845	NM_001286421	83762	Mm.244502	NM_031875	ENSMUSG00000062372	Otof	-	otoferlin	protein-coding	0.015000	0.562189	
mm_3244.1	chr1	136052684	136052884	+	1	NA	NA	NA	-117	NM_001081023	12292	Mm.4418	NM_014193	ENSMUSG00000026407	Cacna1s	AW493108|Cav1.1|Cchl1a3|fmd|mdg|sj	calcium channel, voltage-dependent, L type, alpha 1S subunit	protein-coding	0.030000	0.661692	
mm_104011.1	chr11	85234724	85234924	-	1	NA	NA	NA	296	NM_025825	66884	Mm.271997	NM_025825	ENSMUSG00000018481	Appbp2	1300003O07Rik|AI465480|PAT1	amyloid beta precursor protein (cytoplasmic tail) binding protein 2	protein-coding	0.135000	0.706468	
mm_121905.1	chr14	21987401	21987601	-	1	NA	NA	NA	2100	NM_145459	218820	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.145000	0.751244	
mm_48555.1	chr5	143104779	143104979	-	1	NA	NA	NA	8141	NM_207110	108086	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.015000	0.452736	
mm_136532.1	chr16	97514699	97514899	-	1	NA	NA	NA	-9863	NM_020622	52793	Mm.327932	NM_020622	ENSMUSG00000022938	Fam3b	2-21|9030624C24Rik|D16Jhu19e|ORF9|Pander	family with sequence similarity 3, member B	protein-coding	0.005000	0.482587	
mm_156721.1	chrX	159708558	159708758	+	1	NA	NA	NA	57	NR_110970	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.015000	0.527363	
mm_3677.1	chr1	153667573	153667773	+	1	NA	NA	NA	2000	NM_001347115	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding	0.015000	0.522388	
mm_62387.1	chr7	100894402	100894602	+	1	NA	NA	NA	-12093	NR_037289	100526508		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	0.095000	0.731343	
mm_53814.1	chr6	147032517	147032717	+	1	NA	NA	NA	80	NM_025620	66532	Mm.45888	NM_025620	ENSMUSG00000040121	Rep15	2210417D09Rik	RAB15 effector protein	protein-coding	0.010000	0.482587	
mm_136133.1	chr16	86806263	86806463	-	1	NA	NA	NA	-547822	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0.005000	0.437811	-33(GGGTATAAAAAG,-,0.00)
mm_88073.1	chr10	67909960	67910160	+	1	NA	NA	NA	2602	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0.005000	0.427861	
mm_99558.1	chr11	103649482	103649682	+	1	NA	NA	NA	73	NM_001033212	104582	Mm.44618	NM_001033212	ENSMUSG00000046215	Rprml	AW049332	reprimo-like	protein-coding	0.110000	0.696517	
mm_162205.1	chrX	135589002	135589202	-	1	NA	NA	NA	4753	NM_130888	170722	Mm.103373	NM_130888	ENSMUSG00000031410	Nxf7	Nx7|Nxf6|nfx-a1|nxf-a|nxf-a2	nuclear RNA export factor 7	protein-coding	0.015000	0.457711	
mm_130645.1	chr15	100599911	100600111	-	1	NA	NA	NA	-27	NM_001304965	19009	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0.090000	0.731343	
mm_2725.1	chr1	128193632	128193832	+	1	NA	NA	NA	-8629	NR_029543	387147		NR_029543	ENSMUSG00000065520	Mir128-1	Mirn128|Mirn128-1|Mirn128a|mir-128-1	microRNA 128-1	ncRNA	0.005000	0.537313	
mm_172787.1	chr9	105819450	105819650	-	1	NA	NA	NA	8535	NM_001102607	245026	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0.040000	0.552239	
mm_108298.1	chr12	79255212	79255412	+	1	NA	NA	NA	40970	NM_001008550	211978	Mm.297919	NM_001008550	ENSMUSG00000066440	Zfyve26	4930465A13|9330197E15Rik|A630028O16Rik|Gm893|mKIAA0321	zinc finger, FYVE domain containing 26	protein-coding	0.035000	0.512438	
mm_130721.1	chr15	101078315	101078515	-	1	NA	NA	NA	-24016	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.130000	0.800995	
mm_163105.1	chr11	69921114	69921314	-	1	NA	NA	NA	61	NM_001166595	276770	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.155000	0.716418	
mm_146988.1	chr18	34006942	34007142	-	1	NA	NA	NA	164	NM_013512	13824	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	0.080000	0.701493	
mm_37714.1	chr4	129500677	129500877	-	1	NA	NA	NA	9587	NM_001085491	68233	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0.065000	0.656716	
mm_49360.1	chr6	22875404	22875604	+	1	NA	NA	NA	2	NM_001081306	19283	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding	0.130000	0.766169	
mm_133374.1	chr16	84710350	84710550	+	1	NA	NA	NA	-2573	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.015000	0.467662	
mm_165179.1	chr2	29189081	29189281	+	1	NA	NA	NA	58918	NM_001305805	171171	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	0.015000	0.422886	
mm_124741.1	chr15	6597765	6597965	+	1	NA	NA	NA	18018	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.010000	0.378109	
mm_35919.1	chr4	53031556	53031756	-	1	NA	NA	NA	19776	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.005000	0.283582	
mm_24844.1	chr3	95662014	95662214	+	1	NA	NA	NA	3393	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.010000	0.492537	-83(CCCTATAGAGTC,+,0.00)
mm_80978.1	chr9	103183271	103183471	+	1	NA	NA	NA	18694	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.005000	0.542289	
mm_150809.1	chr19	44378271	44378471	+	1	NA	NA	NA	29338	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.000000	0.621891	
mm_46587.1	chr5	107723864	107724064	-	1	NA	NA	NA	379	NM_010278	14581	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.055000	0.636816	
mm_137197.1	chr17	23853666	23853866	+	1	NA	NA	NA	-6	NM_027220	69814	Mm.244143	NM_027220	ENSMUSG00000048992	Prss32	2010001P08Rik|mT5|tryptase-5	protease, serine 32	protein-coding	0.000000	0.592040	
mm_61773.1	chr7	83631867	83632067	+	1	NA	NA	NA	-50	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.065000	0.621891	
mm_4570.1	chr1	177729756	177729956	+	1	NA	NA	NA	42	NM_027077	69428	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.005000	0.522388	
mm_172418.1	chr7	25395901	25396101	-	1	NA	NA	NA	-14	NM_010719	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.080000	0.651741	
mm_94222.1	chr11	3202790	3202990	+	1	NA	NA	NA	-105	NM_001166547	74203	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0.160000	0.810945	
mm_159768.1	chr5	98329325	98329525	+	1	NA	NA	NA	121	NM_001024614	75784	Mm.443240	NM_001024614	ENSMUSG00000057816	1700007G11Rik	4930428O21Rik	RIKEN cDNA 1700007G11 gene	protein-coding	0.095000	0.621891	
mm_92694.1	chr10	80668590	80668790	-	1	NA	NA	NA	7603	NM_021462	17347	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.025000	0.601990	
mm_129276.1	chr15	77134830	77135030	-	1	NA	NA	NA	18882	NM_001110830	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.010000	0.427861	
mm_20877.1	chr2	148732317	148732517	-	1	NA	NA	NA	3	NM_019632	17957	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	0.070000	0.611940	
mm_157552.1	chrX	51800981	51801181	-	1	NA	NA	NA	152	NM_031388	83563	Mm.242827	NM_031388	ENSMUSG00000055780	Usp26	-	ubiquitin specific peptidase 26	protein-coding	0.020000	0.477612	-34(GCCTATAAAAGG,-,0.00)
mm_125590.1	chr15	59648202	59648402	+	1	NA	NA	NA	-352	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.130000	0.781095	
mm_106373.1	chr11	118415712	118415912	-	1	NA	NA	NA	-12	NM_001267591	76025	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	0.010000	0.597015	
mm_138046.1	chr17	33925603	33925803	+	1	NA	NA	NA	-4191	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.035000	0.626866	
mm_123700.1	chr14	69716550	69716750	-	1	NA	NA	NA	-1841	NM_001301651	71843	Mm.27738	NM_001146012	ENSMUSG00000034194	R3hcc1	1700020M16Rik|AA407796	R3H domain and coiled-coil containing 1	protein-coding	0.020000	0.472637	
mm_59366.1	chr7	25687760	25687960	+	1	NA	NA	NA	858	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.085000	0.721393	
mm_142511.1	chr17	46202362	46202562	-	1	NA	NA	NA	163	NM_030715	80905	Mm.311585	NM_030715	ENSMUSG00000023953	Polh	RAD30A|XPV	polymerase (DNA directed), eta (RAD 30 related)	protein-coding	0.075000	0.562189	
mm_169858.1	chr16	3345870	3346070	+	1	NA	NA	NA	-246428	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.015000	0.442786	
mm_147064.1	chr18	35087509	35087709	-	1	NA	NA	NA	-31303	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.030000	0.492537	20(GCTTTAATAACG,+,0.00)
mm_98665.1	chr11	96282282	96282482	+	1	NA	NA	NA	477	NM_010461	15416	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	0.045000	0.601990	
mm_57716.1	chr6	128788449	128788649	-	1	NA	NA	NA	92	NM_008527	17059	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0.005000	0.467662	
mm_119517.1	chr14	47472486	47472686	+	1	NA	NA	NA	25	NM_001146085	78938	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	0.135000	0.731343	
mm_133120.1	chr16	65815133	65815333	+	1	NA	NA	NA	-400	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.080000	0.671642	
mm_36023.1	chr4	56990308	56990508	-	1	NA	NA	NA	-17	NM_001142965	230235	Mm.207654	NM_001142965	ENSMUSG00000045589	Frrs1l	6430704M03Rik	ferric-chelate reductase 1 like	protein-coding	0.150000	0.766169	
mm_42252.1	chr5	114003631	114003831	+	1	NA	NA	NA	-4	NM_010018	13142	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	0.010000	0.582090	
mm_51373.1	chr6	72955016	72955216	+	1	NA	NA	NA	3116	NM_001039392	19240	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.020000	0.487562	
mm_133812.1	chr16	95703098	95703298	+	1	NA	NA	NA	791	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.020000	0.373134	
mm_118250.1	chr13	112001146	112001346	-	1	NA	NA	NA	133310	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.020000	0.532338	
mm_63755.1	chr7	131106818	131107018	+	1	NA	NA	NA	39365	NM_173409	233918	Mm.78341	NM_173409	ENSMUSG00000013668	4933402N03Rik	4930412O05	RIKEN cDNA 4933402N03 gene	protein-coding	0.005000	0.373134	
mm_141751.1	chr17	34239628	34239828	-	1	NA	NA	NA	823	NM_010389	15002	Mm.327358	NM_010389	ENSMUSG00000041538	H2-Ob	A-beta-2|A-beta2|H-2Ab|H-2I|H-2Ob|H2-Ab|H2-Ab2|H2-IAb2|Ob	histocompatibility 2, O region beta locus	protein-coding	0.020000	0.457711	
mm_79606.1	chr9	58599287	58599487	+	1	NA	NA	NA	17147	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.010000	0.402985	
mm_113144.1	chr13	24721578	24721778	+	1	NA	NA	NA	40259	NM_020567	57441	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.030000	0.562189	
mm_5535.1	chr1	38106731	38106931	-	1	NA	NA	NA	22831	NM_019570	56210	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	0.020000	0.398010	23(GTGTATTAAAGG,-,0.00)
mm_22998.1	chr3	34041000	34041200	+	1	NA	NA	NA	21021	NM_001113188	14359	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0.020000	0.368159	
mm_145879.1	chr18	65476424	65476624	+	1	NA	NA	NA	45527	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.005000	0.343284	17(CTTTTTATAGGA,+,0.00),48(CGTTATTTAAGC,-,0.00)
mm_13465.1	chr2	105675575	105675775	+	1	NA	NA	NA	-69	NM_001244200	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.030000	0.547264	
mm_93737.1	chr10	120140515	120140715	-	1	NA	NA	NA	-27650	NM_080446	117599	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.005000	0.298507	
mm_11548.1	chr2	32715001	32715201	+	1	NA	NA	NA	-2129	NR_039536	100628606		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0.005000	0.557214	
mm_114321.1	chr13	60601681	60601881	+	1	NA	NA	NA	-166	NM_001285917	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.075000	0.552239	
mm_19264.1	chr2	84822470	84822670	-	1	NA	NA	NA	82	NM_024230	68678	Mm.33452	NM_024230	ENSMUSG00000027077	Smtnl1	1110030K22Rik|CHASM	smoothelin-like 1	protein-coding	0.030000	0.572139	
mm_20153.1	chr2	121569417	121569617	-	1	NA	NA	NA	62794	NM_001290986	241627	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	0.000000	0.452736	
mm_134662.1	chr16	22163635	22163835	-	1	NA	NA	NA	-436	NM_183029	319765	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.050000	0.572139	
mm_116641.1	chr13	49062341	49062541	-	1	NA	NA	NA	85887	NM_029361	75607	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.015000	0.398010	
mm_81561.1	chr9	110415397	110415597	+	1	NA	NA	NA	-4311	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.015000	0.527363	
mm_118605.1	chr14	20836561	20836761	+	1	NA	NA	NA	-1	NM_008873	18792	Mm.4183	NM_008873	ENSMUSG00000021822	Plau	u-PA|uPA	plasminogen activator, urokinase	protein-coding	0.050000	0.636816	
mm_2208.1	chr1	89580221	89580421	+	1	NA	NA	NA	103571	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.155000	0.741294	
mm_18780.1	chr2	73625638	73625838	-	1	NA	NA	NA	2	NM_029716	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	0.010000	0.487562	
mm_3630.1	chr1	152807723	152807923	+	1	NA	NA	NA	7670	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.030000	0.547264	
mm_93526.1	chr10	115315415	115315615	-	1	NA	NA	NA	76	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.105000	0.706468	-71(CGCCATTAGAGG,-,0.00)
mm_63721.1	chr7	130834343	130834543	+	1	NA	NA	NA	-31281	NM_001346515	101476	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.080000	0.631841	
mm_67327.1	chr7	79732701	79732901	-	1	NA	NA	NA	-25	NM_001113471	103968	Mm.254917	NM_175640	ENSMUSG00000030546	Plin1	6030432J05Rik|Peri|Plin	perilipin 1	protein-coding	0.015000	0.592040	
mm_65617.1	chr7	27533628	27533828	-	1	NA	NA	NA	10467	NM_001033315	233020	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.050000	0.592040	
mm_29399.1	chr3	108904499	108904699	-	1	NA	NA	NA	7105	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.070000	0.537313	
mm_170059.1	chr17	30624253	30624453	+	1	NA	NA	NA	2552	NR_045287	67522	Mm.254797	NR_045287	ENSMUSG00000099474	1700097N02Rik	-	RIKEN cDNA 1700097N02 gene	ncRNA	0.070000	0.631841	
mm_90024.1	chr10	115393396	115393596	+	1	NA	NA	NA	8537	NM_001033261	216345	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0.000000	0.338308	
mm_111529.1	chr12	100447191	100447391	-	1	NA	NA	NA	73531	NM_001033213	104718	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.020000	0.552239	
mm_104005.1	chr11	84944695	84944895	-	1	NA	NA	NA	-12959	NM_007607	12351	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	0.015000	0.562189	-36(CACTATAAAGGG,-,0.00)
mm_138598.1	chr17	35533101	35533301	+	1	NA	NA	NA	0	NM_020576	57390	Mm.34201	NM_020576	ENSMUSG00000024409	Psors1c2	AI448740|Pcg|SPR1	psoriasis susceptibility 1 candidate 2 (human)	protein-coding	0.010000	0.601990	
mm_52650.1	chr6	117180801	117181001	+	1	NA	NA	NA	12366	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.010000	0.557214	
mm_60139.1	chr7	38094503	38094703	+	1	NA	NA	NA	12887	NM_007633	12447	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	0.020000	0.517413	
mm_155005.1	chrX	41400623	41400823	+	1	NA	NA	NA	-578	NM_016886	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding	0.045000	0.522388	
mm_19149.1	chr2	80580794	80580994	-	1	NA	NA	NA	288	NM_001290745	50884	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0.145000	0.736318	
mm_58952.1	chr7	18786203	18786403	+	1	NA	NA	NA	1	NR_024208	20958	Mm.423480	NR_024208	ENSMUSG00000109116	Sycp1-ps1	Sycp1-rs	synaptonemal complex protein 1, pseudogene 1	pseudo	0.045000	0.577114	
mm_132804.1	chr16	45158730	45158930	+	1	NA	NA	NA	1	NM_026402	67841	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	0.080000	0.671642	
mm_74496.1	chr8	5105253	5105453	-	1	NA	NA	NA	-66	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.020000	0.358209	72(GGGTTTAAAAGT,-,0.00)
mm_72399.1	chr8	81768428	81768628	+	1	NA	NA	NA	425966	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.010000	0.432836	
mm_54775.1	chr6	41539188	41539388	-	1	NA	NA	NA	17512	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.000000	0.517413	
mm_164838.1	chr18	41916467	41916667	+	1	NA	NA	NA	34627	NM_029942	77619	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	0.015000	0.432836	
mm_68135.1	chr7	102239480	102239680	-	1	NA	NA	NA	10538	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.005000	0.572139	
mm_146385.1	chr18	82692434	82692634	+	1	NA	NA	NA	200	NM_177832	329002	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.205000	0.855721	
mm_63382.1	chr7	127213073	127213273	+	1	NA	NA	NA	1565	NM_016754	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.015000	0.532338	
mm_59061.1	chr7	19415369	19415569	+	1	NA	NA	NA	4375	NM_007710	12715	Mm.2375	NM_007710	ENSMUSG00000030399	Ckm	Ckmm|M-CK|MCK	creatine kinase, muscle	protein-coding	0.060000	0.636816	
mm_165069.1	chr19	44407417	44407617	-	1	NA	NA	NA	192	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.065000	0.606965	-77(CCCTTTAAAATC,+,0.00),-76(CCTTTAAAATCC,+,0.00)
mm_130955.1	chr15	103260064	103260264	-	1	NA	NA	NA	-1761	NM_001302341	18022	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.005000	0.542289	
mm_132649.1	chr16	41532843	41533043	+	1	NA	NA	NA	117	NM_001347236	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.010000	0.592040	
mm_99945.1	chr11	111073685	111073885	+	1	NA	NA	NA	7621	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.010000	0.348259	
mm_12948.1	chr2	87525933	87526133	+	1	NA	NA	NA	-6002	NM_206823	110511	Mm.424751	NM_206823	ENSMUSG00000061520	Olfr153	GA_x6K02T2Q125-49033418-49034341|MOR177-5|Olfr4-2|V5	olfactory receptor 153	protein-coding	0.095000	0.597015	
mm_155735.1	chrX	96165998	96166198	+	1	NA	NA	NA	70053	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.025000	0.562189	
mm_87459.1	chr10	51484557	51484757	+	1	NA	NA	NA	4045	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.005000	0.462687	
mm_3498.1	chr1	150106838	150107038	+	1	NA	NA	NA	6907	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.030000	0.492537	
mm_72985.1	chr8	92960508	92960708	+	1	NA	NA	NA	-439	NM_009209	20538	Mm.57040	NM_009209	ENSMUSG00000055368	Slc6a2	NE-T|NET|Slc6a5	solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	protein-coding	0.100000	0.731343	
mm_151559.1	chr19	60144497	60144697	+	1	NA	NA	NA	-78	NR_026942	107376	Mm.245813	NR_026942	ENSMUSG00000053117	E330013P04Rik	9930018I18Rik|AW492152	RIKEN cDNA E330013P04 gene	ncRNA	0.045000	0.522388	
mm_138465.1	chr17	35171441	35171641	+	1	NA	NA	NA	4460	NM_019467	11629	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.020000	0.507463	
mm_147288.1	chr18	39489722	39489922	-	1	NA	NA	NA	-2577	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.155000	0.756219	
mm_132230.1	chr16	32673066	32673266	+	1	NA	NA	NA	12	NM_001289443	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.020000	0.606965	
mm_132019.1	chr16	26462980	26463180	+	1	NA	NA	NA	-55	NM_053241	114141	Mm.275205	NM_053241	ENSMUSG00000038148	Cldn16	PCLN1|claudin-16	claudin 16	protein-coding	0.020000	0.517413	
mm_22598.1	chr3	13946301	13946501	+	1	NA	NA	NA	29	NM_001163330	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.025000	0.467662	
mm_134064.1	chr16	8470993	8471193	-	1	NA	NA	NA	280	NM_146247	239706	Mm.214953	NM_146247	ENSMUSG00000039345	Mettl22	-	methyltransferase like 22	protein-coding	0.070000	0.656716	
mm_125839.1	chr15	74958544	74958744	+	1	NA	NA	NA	3538	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.030000	0.567164	
mm_102124.1	chr11	53351890	53352090	-	1	NA	NA	NA	1223	NM_033565	93736	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.035000	0.487562	
mm_9332.1	chr1	171919259	171919459	-	1	NA	NA	NA	1822	NM_030710	30925	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	0.020000	0.497512	
mm_105423.1	chr11	103697685	103697885	-	1	NA	NA	NA	61	NR_102396	399609	Mm.351922	NR_102388		C130046K22Rik	-	RIKEN cDNA C130046K22 gene	ncRNA	0.110000	0.686567	
mm_150390.1	chr19	36409546	36409746	+	1	NA	NA	NA	30579	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.135000	0.796020	
mm_92770.1	chr10	81151652	81151852	-	1	NA	NA	NA	15481	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.025000	0.402985	
mm_112055.1	chr12	111813746	111813946	-	1	NA	NA	NA	33	NM_028875	74335	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	0.085000	0.636816	
mm_149718.1	chr19	21713751	21713951	+	1	NA	NA	NA	60542	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.005000	0.527363	
mm_97026.1	chr11	72207427	72207627	+	1	NA	NA	NA	-27	NM_026559	52700	Mm.27670	NM_026559	ENSMUSG00000020803	Txndc17	4831443O22Rik|D11Ertd672e|TRP14|Txnl5	thioredoxin domain containing 17	protein-coding	0.060000	0.626866	
mm_42950.1	chr5	123015049	123015249	+	1	NA	NA	NA	75	NM_175423	109305	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.160000	0.781095	
mm_139137.1	chr17	47509353	47509553	+	1	NA	NA	NA	4402	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.437811	
mm_22716.1	chr3	19310599	19310799	+	1	NA	NA	NA	623	NM_001122759	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.060000	0.641791	
mm_24132.1	chr3	88214383	88214583	+	1	NA	NA	NA	-688	NR_037276	100526540		NR_037276	ENSMUSG00000092988	Mir3093	mir-3093|mmu-mir-3093	microRNA 3093	ncRNA	0.050000	0.631841	
mm_103374.1	chr11	75340986	75341186	-	1	NA	NA	NA	7297	NM_001164223	68275	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0.020000	0.467662	
mm_20475.1	chr2	129581630	129581830	-	1	NA	NA	NA	-11109	NM_001291020	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.015000	0.442786	-34(CTCTATATAAGG,-,0.00)
mm_49895.1	chr6	38918948	38919148	+	1	NA	NA	NA	62	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.010000	0.507463	-78(CTCTTTATAAAG,-,0.00),-76(CTTTATAAAGAA,+,0.00),35(TCCTATAAGGGC,+,0.00)
mm_87915.1	chr10	62432553	62432753	+	1	NA	NA	NA	-10196	NM_145419	216019	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	0.030000	0.522388	
mm_168913.1	chr12	55502078	55502278	-	1	NA	NA	NA	-9531	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.030000	0.497512	
mm_4936.1	chr1	191120964	191121164	+	1	NA	NA	NA	22650	NM_030060	381319	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.045000	0.502488	
mm_98045.1	chr11	85683760	85683960	+	1	NA	NA	NA	35884	NR_045875	71489	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.030000	0.467662	
mm_67051.1	chr7	67337321	67337521	-	1	NA	NA	NA	35437	NM_001291192	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.005000	0.378109	
mm_144171.1	chr18	6603530	6603730	+	1	NA	NA	NA	-3	NM_027598	70901	Mm.158484	NM_027598	ENSMUSG00000039540	4921524L21Rik	-	RIKEN cDNA 4921524L21 gene	protein-coding	0.010000	0.388060	
mm_146620.1	chr18	10106353	10106553	-	1	NA	NA	NA	75339	NM_009071	19877	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.000000	0.293532	
mm_148917.1	chr19	6975122	6975322	+	1	NA	NA	NA	174	NM_008889	18938	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.170000	0.835821	
mm_170864.1	chr2	181953091	181953291	-	1	NA	NA	NA	-38035	NM_001205282	672125	Mm.489571	NM_001205282	ENSMUSG00000098505	Gm14496	OTTMUSG00000016837	predicted gene 14496	protein-coding	0.030000	0.567164	
mm_17010.1	chr2	18872278	18872478	-	1	NA	NA	NA	-70560	NR_131254	66774	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.025000	0.417910	
mm_105216.1	chr11	102177620	102177820	-	1	NA	NA	NA	7536	NM_172947	268490	Mm.259079	NM_172947	ENSMUSG00000020922	Lsm12	1110032E16Rik|1110059P07|2600001B17Rik	LSM12 homolog	protein-coding	0.015000	0.398010	
mm_149960.1	chr19	28990260	28990460	+	1	NA	NA	NA	8	NM_025950	67072	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	0.105000	0.661692	
mm_56673.1	chr6	113690397	113690597	-	1	NA	NA	NA	-6553	NM_001347356	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.000000	0.472637	
mm_144785.1	chr18	35854642	35854842	+	1	NA	NA	NA	24924	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.000000	0.542289	
mm_124936.1	chr15	12230383	12230583	+	1	NA	NA	NA	25389	NM_172958	268783	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.010000	0.407960	
mm_21966.1	chr2	167300677	167300877	-	1	NA	NA	NA	48401	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.000000	0.333333	
mm_62645.1	chr7	107666095	107666295	+	1	NA	NA	NA	59351	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.020000	0.527363	
mm_144252.1	chr18	10920832	10921032	+	1	NA	NA	NA	-131578	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.030000	0.522388	
mm_134330.1	chr16	16439401	16439601	-	1	NA	NA	NA	-80470	NM_001276340	74006	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	0.005000	0.268657	
mm_25541.1	chr3	115801016	115801216	+	1	NA	NA	NA	-86061	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.020000	0.502488	-31(TCTTTTAAGCAC,+,0.00)
mm_82352.1	chr9	14275879	14276079	-	1	NA	NA	NA	-322	NM_030261	75747	Mm.325126	NM_030261	ENSMUSG00000032009	Sesn3	5630400E15Rik|BC003348|SEST3	sestrin 3	protein-coding	0.040000	0.517413	
mm_75092.1	chr8	34093067	34093267	-	1	NA	NA	NA	14647	NM_001293758	22428	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.010000	0.507463	
mm_129249.1	chr15	76669702	76669902	-	1	NA	NA	NA	146	NM_007989	14106	Mm.42011	NM_007989	ENSMUSG00000033837	Foxh1	Fast1|Fast2|fast-1|fast-2	forkhead box H1	protein-coding	0.035000	0.626866	
mm_154349.1	chrM	5709	5909	+	1	NA	NA	NA	NA	NA									0.015000	0.412935	
mm_98798.1	chr11	97018723	97018923	+	1	NA	NA	NA	5254	NM_031183	83395	Mm.156282	NM_031183	ENSMUSG00000038560	Sp6	1110025J03Rik|AA591031|AI592962|Epfn|Klf14	trans-acting transcription factor 6	protein-coding	0.125000	0.721393	
mm_104553.1	chr11	96798518	96798718	-	1	NA	NA	NA	-462	NR_033523	629750	Mm.390396	NR_033523		Gm11517	OTTMUSG00000001634	ubiquitin A-52 residue ribosomal protein fusion product 1 pseudogene	pseudo	0.000000	0.427861	
mm_68031.1	chr7	101293381	101293581	-	1	NA	NA	NA	8607	NM_001111111	73683	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.005000	0.492537	
mm_166611.1	chr6	70031586	70031786	-	1	NA	NA	NA	-704512	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.328358	
mm_132648.1	chr16	41532758	41532958	+	1	NA	NA	NA	32	NM_001347236	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.015000	0.606965	
mm_64712.1	chr7	4630204	4630404	-	1	NA	NA	NA	178	NM_023440	68255	Mm.389784	NM_023440	ENSMUSG00000045282	Tmem86b	C330014O21Rik	transmembrane protein 86B	protein-coding	0.005000	0.532338	
mm_108716.1	chr12	87157490	87157690	+	1	NA	NA	NA	-2105	NR_136901	625237	Mm.390529	NR_136901		Gm6566	EG625237	predicted gene 6566	ncRNA	0.010000	0.527363	
mm_109685.1	chr12	113140472	113140672	+	1	NA	NA	NA	-33	NM_001347443	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.125000	0.706468	
mm_113091.1	chr13	24104220	24104420	+	1	NA	NA	NA	-113106	NM_145399	214189	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.010000	0.432836	16(ATCTTTATAAGC,-,0.00)
mm_16221.1	chr2	173110727	173110927	+	1	NA	NA	NA	8698	NM_001081387	664799	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris|OTTMUSG00000016680	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.030000	0.497512	
mm_158741.1	chrX	164246638	164246838	-	1	NA	NA	NA	11455	NM_009759	12169	Mm.504	NM_009759	ENSMUSG00000031377	Bmx	Etk|Etk/Bmx|Tyro8	BMX non-receptor tyrosine kinase	protein-coding	0.005000	0.333333	
mm_158717.1	chrX	162643547	162643747	-	1	NA	NA	NA	11	NM_001290633	194590	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	0.115000	0.736318	
mm_90246.1	chr10	121494334	121494534	+	1	NA	NA	NA	-18184	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.005000	0.482587	
mm_72597.1	chr8	84414605	84414805	+	1	NA	NA	NA	-659	NM_001252060	12286	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.110000	0.671642	
mm_90192.1	chr10	120208660	120208860	+	1	NA	NA	NA	-66	NM_026617	68212	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	0.080000	0.636816	
mm_132845.1	chr16	46009000	46009200	+	1	NA	NA	NA	1313	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.005000	0.457711	
mm_148671.1	chr19	5637619	5637819	+	1	NA	NA	NA	229	NM_009045	19697	Mm.249966	NM_009045	ENSMUSG00000024927	Rela	p65	v-rel reticuloendotheliosis viral oncogene homolog A (avian)	protein-coding	0.180000	0.761194	
mm_40957.1	chr5	76951244	76951444	+	1	NA	NA	NA	-67	NM_025939	67054	Mm.182931	NM_025939	ENSMUSG00000029247	Paics	2610511I09Rik|ADE2H1|AIRC|PAIS	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	protein-coding	0.070000	0.626866	
mm_105490.1	chr11	106084051	106084251	-	1	NA	NA	NA	-751	NM_011947	26406	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.095000	0.691542	
mm_137789.1	chr17	29614788	29614988	+	1	NA	NA	NA	99	NM_021419	58230	Mm.305994	NM_021419	ENSMUSG00000090083	Rnf8	3830404E21Rik|AIP37|laXp180	ring finger protein 8	protein-coding	0.105000	0.681592	
mm_138597.1	chr17	35532845	35533045	+	1	NA	NA	NA	-256	NM_020576	57390	Mm.34201	NM_020576	ENSMUSG00000024409	Psors1c2	AI448740|Pcg|SPR1	psoriasis susceptibility 1 candidate 2 (human)	protein-coding	0.035000	0.577114	
mm_76508.1	chr8	86885152	86885352	-	1	NA	NA	NA	6	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.150000	0.746269	
mm_134423.1	chr16	17893996	17894196	-	1	NA	NA	NA	-107	NM_009435	22114	Mm.439725	NM_009435	ENSMUSG00000041566	Tssk1	Stk22a|TSK-1|Tsk1|Tssk|Tssk1b	testis-specific serine kinase 1	protein-coding	0.010000	0.517413	
mm_24278.1	chr3	89215118	89215318	+	1	NA	NA	NA	31	NM_013691	21827	Mm.2114	NM_013691	ENSMUSG00000028047	Thbs3	TSP3|Thbs-3	thrombospondin 3	protein-coding	0.040000	0.651741	
mm_171072.1	chr3	115942368	115942568	+	1	NA	NA	NA	-37434	NR_130332	100316705		NR_130332	ENSMUSG00000089261	Mir669n	mmu-mir-669n	microRNA 669n	ncRNA	0.065000	0.577114	
mm_120398.1	chr14	64690589	64690789	+	1	NA	NA	NA	38158	NM_001081177	16554	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.005000	0.368159	
mm_110775.1	chr12	70347446	70347646	-	1	NA	NA	NA	68	NM_001286386	94090	Mm.184012	NM_053167	ENSMUSG00000021071	Trim9	-	tripartite motif-containing 9	protein-coding	0.060000	0.631841	
mm_5713.1	chr1	43933776	43933976	-	1	NA	NA	NA	-118	NM_001310540	22019	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.080000	0.582090	
mm_161053.1	chr12	55492457	55492657	-	1	NA	NA	NA	90	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.075000	0.706468	-74(GCGTTTATAGGG,-,0.00),-72(GTTTATAGGGCG,+,0.00)
mm_54801.1	chr6	41699830	41700030	-	1	NA	NA	NA	4395	NM_032540	23925	Mm.19958	NM_032540	ENSMUSG00000029866	Kel	CD238|Ece3	Kell blood group	protein-coding	0.005000	0.283582	
mm_164337.1	chr16	11022050	11022250	-	1	NA	NA	NA	13252	NR_040518	100043147	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.005000	0.407960	-91(GCTTTAATGGGA,+,0.00)
mm_95246.1	chr11	44617832	44618032	+	1	NA	NA	NA	-168	NM_001290711	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.020000	0.358209	
mm_145267.1	chr18	52767616	52767816	+	1	NA	NA	NA	-95	NM_026408	67847	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0.020000	0.527363	
mm_79547.1	chr9	57922386	57922586	+	1	NA	NA	NA	11500	NM_001122873	69459	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0.025000	0.616915	
mm_155264.1	chrX	58030556	58030756	+	1	NA	NA	NA	28	NM_009575	22773	Mm.255890	NM_009575	ENSMUSG00000067860	Zic3	Bn|Ka	zinc finger protein of the cerebellum 3	protein-coding	0.055000	0.592040	
mm_123334.1	chr14	63103914	63104114	-	1	NA	NA	NA	-18448	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.472637	
mm_99569.1	chr11	103954061	103954261	+	1	NA	NA	NA	-105	NM_008740	18195	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	0.125000	0.681592	70(GCCTTTTAATGG,-,0.00),72(CTTTTAATGGAC,+,0.00)
mm_16980.1	chr2	18028730	18028930	-	1	NA	NA	NA	1581	NR_028378	100034739	Mm.401643	NR_028378		Gm17762	-	predicted gene, 17762	ncRNA	0.065000	0.681592	
mm_166617.1	chr6	72109691	72109891	+	1	NA	NA	NA	12183	NM_011375	20454	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.015000	0.557214	
mm_140460.1	chr17	90088385	90088585	+	1	NA	NA	NA	-117	NM_001347419	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.045000	0.567164	
mm_91273.1	chr10	24590510	24590710	-	1	NA	NA	NA	-4832	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.015000	0.412935	
mm_77640.1	chr8	124369868	124370068	-	1	NA	NA	NA	63968	NM_171824	209966	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	0.020000	0.462687	
mm_108300.1	chr12	79297219	79297419	+	1	NA	NA	NA	-32	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.030000	0.522388	
mm_149125.1	chr19	8990508	8990708	+	1	NA	NA	NA	1324	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.025000	0.597015	
mm_43222.1	chr5	129787277	129787477	+	1	NA	NA	NA	21	NM_009838	12466	Mm.153159	NM_009838		Cct6a	CCT-zeta|CCT-zeta-1|Cct6|Cctz-1|TCP-1-zeta	chaperonin containing Tcp1, subunit 6a (zeta)	protein-coding	0.090000	0.646766	
mm_73780.1	chr8	116943306	116943506	+	1	NA	NA	NA	13	NM_177700	234776	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	0.155000	0.815920	
mm_9006.1	chr1	165848963	165849163	-	1	NA	NA	NA	60382	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.015000	0.537313	
mm_68047.1	chr7	101538089	101538289	-	1	NA	NA	NA	17613	NM_007490	11871	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0.025000	0.467662	-27(TCCCTTAAAAAC,-,0.00),-25(CCTTAAAAACAC,+,0.00)
mm_116812.1	chr13	54380123	54380323	-	1	NA	NA	NA	8874	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.000000	0.442786	
mm_22640.1	chr3	14863408	14863608	+	1	NA	NA	NA	-30	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.030000	0.537313	-30(CTATATAAAAGA,-,0.00)
mm_74967.1	chr8	27042634	27042834	-	1	NA	NA	NA	179	NM_054057	114863	Mm.277501	NM_054057	ENSMUSG00000031485	Prosc	1700024N20Rik|2200002F22Rik	proline synthetase co-transcribed	protein-coding	0.115000	0.731343	
mm_81430.1	chr9	109094411	109094611	+	1	NA	NA	NA	-925	NM_172775	235611	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.015000	0.562189	
mm_67271.1	chr7	75780683	75780883	-	1	NA	NA	NA	-67555	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.030000	0.641791	
mm_151477.1	chr19	58674961	58675161	+	1	NA	NA	NA	4696	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.005000	0.482587	
mm_20631.1	chr2	131994226	131994426	-	1	NA	NA	NA	35662	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.005000	0.472637	-34(AGCTTTTAAAGA,-,0.00),-33(GCTTTTAAAGAC,+,0.00)
mm_109604.1	chr12	112719147	112719347	+	1	NA	NA	NA	-2927	NM_001024602	217882	Mm.23689	NM_001024602	ENSMUSG00000072825	Cep170b	AI466840|AW555464|Kiaa0284|mKIAA0284	centrosomal protein 170B	protein-coding	0.005000	0.527363	88(CCTCTTAAGGAC,+,0.00)
mm_99694.1	chr11	106090890	106091090	+	1	NA	NA	NA	6088	NM_011947	26406	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.005000	0.402985	-49(ACTCATAAAAGG,-,0.00),-33(TCCCTTAAAAAC,-,0.00),-32(CCCTTAAAAACC,+,0.00),-31(CCTTAAAAACCC,+,0.00)
mm_2277.1	chr1	91298273	91298473	+	1	NA	NA	NA	35	NM_016717	50880	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	0.105000	0.676617	
mm_3676.1	chr1	153667538	153667738	+	1	NA	NA	NA	1965	NM_001347115	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding	0.010000	0.522388	
mm_85852.1	chr9	110656301	110656501	-	1	NA	NA	NA	-102	NM_028312	72654	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.040000	0.492537	
mm_68219.1	chr7	104410985	104411185	-	1	NA	NA	NA	-52439	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.005000	0.363184	
mm_3094.1	chr1	134415422	134415622	+	1	NA	NA	NA	-142	NM_001306069	72674	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.150000	0.805970	
mm_6745.1	chr1	83277238	83277438	-	1	NA	NA	NA	117576	NM_027725	71227	Mm.256482	NM_027725	ENSMUSG00000053161	Daw1	4930563E19Rik|4933429D11Rik|Wdr69|b2b1116Clo|b2b1584Clo	dynein assembly factor with WDR repeat domains 1	protein-coding	0.010000	0.452736	
mm_2081.1	chr1	87675556	87675756	+	1	NA	NA	NA	55344	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.000000	0.502488	
mm_140723.1	chr17	15434735	15434935	-	1	NA	NA	NA	38589	NM_024203	67544	Mm.35039	NM_024203	ENSMUSG00000014763	Fam120b	4932442K08Rik|AW049283|AW413338|CCPG|Pgcc1|mKIAA1838	family with sequence similarity 120, member B	protein-coding	0.020000	0.482587	
mm_41468.1	chr5	91139499	91139699	+	1	NA	NA	NA	0	NM_009704	11839	Mm.8039	NM_009704	ENSMUSG00000029378	Areg	AR|Mcub|Sdgf	amphiregulin	protein-coding	0.100000	0.701493	-34(GTCTATAAAAGC,-,0.00)
mm_73367.1	chr8	105605163	105605363	+	1	NA	NA	NA	34	NM_001081241	75687	Mm.41261	NM_001081241	ENSMUSG00000038604	Fam65a	2310066E14Rik|AI837433	family with sequence similarity 65, member A	protein-coding	0.130000	0.781095	
mm_155316.1	chrX	61830104	61830304	+	1	NA	NA	NA	120588	NM_001018087	434784	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Sirh7	leucine zipper, down-regulated in cancer 1	protein-coding	0.025000	0.502488	
mm_94549.1	chr11	11171226	11171426	+	1	NA	NA	NA	57310	NM_177033	319922	Mm.337851	NM_177033	ENSMUSG00000050830	Vwc2	A930041G11Rik|G11|PSST739|UNQ739|cradin	von Willebrand factor C domain containing 2	protein-coding	0.005000	0.477612	
mm_108202.1	chr12	76902076	76902276	+	1	NA	NA	NA	60072	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.010000	0.482587	-14(GAGTTTATAGGG,-,0.00),-12(GTTTATAGGGGC,+,0.00)
mm_50362.1	chr6	48647318	48647518	+	1	NA	NA	NA	57	NM_212486	243374	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	0.005000	0.537313	
mm_31936.1	chr4	86575626	86575826	+	1	NA	NA	NA	53	NM_178376	68441	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	0.110000	0.691542	
mm_12842.1	chr2	82507020	82507220	+	1	NA	NA	NA	453462	NM_175513	241514	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding	0.025000	0.402985	
mm_55014.1	chr6	48840626	48840826	-	1	NA	NA	NA	262	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.020000	0.542289	
mm_83472.1	chr9	45787559	45787759	-	1	NA	NA	NA	40979	NM_001081373	214552	Mm.260103	NM_172531	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21|mKIAA1052	centrosomal protein 164	protein-coding	0.010000	0.497512	
mm_79893.1	chr9	65312725	65312925	+	1	NA	NA	NA	18565	NM_011802	270166	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0.010000	0.487562	
mm_97629.1	chr11	78959588	78959788	+	1	NA	NA	NA	25236	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.020000	0.527363	
mm_116601.1	chr13	48593282	48593482	-	1	NA	NA	NA	32290	NM_207232	218232	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding	0.030000	0.552239	
mm_143643.1	chr17	79354846	79355046	-	1	NA	NA	NA	145	NM_026514	260409	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	0.135000	0.731343	
mm_35303.1	chr4	24430471	24430671	-	1	NA	NA	NA	-65891	NM_199467	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.015000	0.502488	2(GCCTTTCTAGGC,+,0.00)
mm_113769.1	chr13	44840592	44840792	+	1	NA	NA	NA	109421	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.050000	0.587065	
mm_27183.1	chr3	34649630	34649830	-	1	NA	NA	NA	-265	NM_011443	20674	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0.075000	0.636816	
mm_85666.1	chr9	107675563	107675763	-	1	NA	NA	NA	3929	NM_008140	14685	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.005000	0.512438	
mm_19580.1	chr2	101649431	101649631	-	1	NA	NA	NA	1	NM_009019	19373	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0.015000	0.507463	
mm_5027.1	chr1	193207619	193207819	+	1	NA	NA	NA	-6173	NM_153137	215243	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	0.005000	0.482587	
mm_142393.1	chr17	44880773	44880973	-	1	NA	NA	NA	12	NM_029257	75341	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0.010000	0.447761	
mm_31763.1	chr4	63395062	63395262	+	1	NA	NA	NA	3078	NM_001305432	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.040000	0.592040	
mm_131370.1	chr16	13830472	13830672	+	1	NA	NA	NA	11321	NM_001346111	18203	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0.030000	0.492537	
mm_74782.1	chr8	22039516	22039716	-	1	NA	NA	NA	20458	NM_007511	11979	Mm.87854	NM_007511	ENSMUSG00000006567	Atp7b	Atp7a|WND|tx	ATPase, Cu++ transporting, beta polypeptide	protein-coding	0.030000	0.577114	
mm_5082.1	chr1	4409184	4409384	-	1	NA	NA	NA	-43	NM_001195662	19888	Mm.294263	NM_011283	ENSMUSG00000025900	Rp1	Dcdc3|Orp1|Rp1h|mG145	retinitis pigmentosa 1 (human)	protein-coding	0.005000	0.487562	
mm_90779.1	chr10	6980208	6980408	-	1	NA	NA	NA	-27	NM_001347225	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.015000	0.412935	
mm_60104.1	chr7	35353449	35353649	+	1	NA	NA	NA	19312	NM_027897	52428	Mm.286600	NM_027897	ENSMUSG00000030494	Rhpn2	1300002E07Rik|AA536890|C85860|D7Ertd784e	rhophilin, Rho GTPase binding protein 2	protein-coding	0.020000	0.532338	
mm_3146.1	chr1	135146613	135146813	+	1	NA	NA	NA	-121	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.170000	0.771144	
mm_38862.1	chr4	149445494	149445694	-	1	NA	NA	NA	9374	NM_022020	63954	Mm.46023	NM_022020	ENSMUSG00000028996	Rbp7	1110002J23Rik|CRBP-III	retinol binding protein 7, cellular	protein-coding	0.055000	0.601990	
mm_121341.1	chr14	115622968	115623168	+	1	NA	NA	NA	-213516	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0.015000	0.238806	
mm_146441.1	chr18	84934923	84935123	+	1	NA	NA	NA	-2	NM_015798	50764	Mm.28369	NM_015798	ENSMUSG00000034391	Fbxo15	AU019763|Fbx15|ecat3	F-box protein 15	protein-coding	0.010000	0.437811	-32(GACTATATAAGG,-,0.00)
mm_104838.1	chr11	99170734	99170934	-	1	NA	NA	NA	-15757	NM_007719	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.025000	0.472637	
mm_143252.1	chr17	65509950	65510150	-	1	NA	NA	NA	30732	NM_001008973	381107	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	0.005000	0.467662	-43(CTCTCTATGAGG,-,0.00)
mm_80921.1	chr9	101053424	101053624	+	1	NA	NA	NA	-18640	NM_025835	66904	Mm.335385	NM_025835	ENSMUSG00000032527	Pccb	1300012P06Rik|AI314687|R74805	propionyl Coenzyme A carboxylase, beta polypeptide	protein-coding	0.040000	0.547264	
mm_78560.1	chr9	35740805	35741005	+	1	NA	NA	NA	-144	NM_001167588	100312949	Mm.475848	NM_001167588	ENSMUSG00000091174	Gm17677	Pate-n|Pate10	predicted gene, 17677	protein-coding	0.000000	0.507463	
mm_38875.1	chr4	149683045	149683245	-	1	NA	NA	NA	-7056	NM_001164051	18707	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol 3-kinase catalytic delta polypeptide	protein-coding	0.010000	0.577114	
mm_44097.1	chr5	149287606	149287806	+	1	NA	NA	NA	22702	NM_009663	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.070000	0.517413	
mm_83111.1	chr9	40376138	40376338	-	1	NA	NA	NA	42766	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.025000	0.631841	
mm_142204.1	chr17	36973165	36973365	-	1	NA	NA	NA	7972	NM_029747	76797	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding	0.020000	0.507463	-97(CAGTTTAAAGGG,-,0.00),-25(CCGTATAAAAAC,-,0.00)
mm_9173.1	chr1	171018631	171018831	-	1	NA	NA	NA	-195	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.010000	0.537313	
mm_19646.1	chr2	102865244	102865444	-	1	NA	NA	NA	36321	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.020000	0.517413	
mm_122052.1	chr14	30177318	30177518	-	1	NA	NA	NA	154785	NM_175343	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.010000	0.457711	
mm_18056.1	chr2	39226202	39226402	-	1	NA	NA	NA	36	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding	0.115000	0.621891	
mm_40298.1	chr5	43662279	43662479	+	1	NA	NA	NA	0	NM_172274	231214	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	0.015000	0.467662	-59(CACTTTAAAAAA,-,0.00),7(TTTTTTAAACCC,+,0.00)
mm_71239.1	chr8	40908574	40908774	+	1	NA	NA	NA	-17559	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.015000	0.343284	
mm_96911.1	chr11	70459689	70459889	+	1	NA	NA	NA	167	NM_001029929	574428	Mm.472771	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.055000	0.567164	
mm_72424.1	chr8	82774672	82774872	+	1	NA	NA	NA	-646	NM_145600	30932	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	0.015000	0.472637	
mm_50794.1	chr6	54041280	54041480	+	1	NA	NA	NA	1448	NM_001163640	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.005000	0.383085	
mm_77440.1	chr8	121602156	121602356	-	1	NA	NA	NA	11788	NM_026160	67443	Mm.28357	NM_026160	ENSMUSG00000031812	Map1lc3b	1010001C15Rik|Atg8|LC3b|Map1lc3	microtubule-associated protein 1 light chain 3 beta	protein-coding	0.020000	0.432836	
mm_58082.1	chr6	136941751	136941951	-	1	NA	NA	NA	48	NM_001301301	11857	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	0.015000	0.462687	
mm_17763.1	chr2	32788238	32788438	-	1	NA	NA	NA	-3933	NM_025619	227736	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	0.040000	0.572139	
mm_81104.1	chr9	106448542	106448742	+	1	NA	NA	NA	2	NM_029631	76491	Mm.335427	NM_029631	ENSMUSG00000042073	Abhd14b	1810013B01Rik	abhydrolase domain containing 14b	protein-coding	0.050000	0.587065	
mm_144489.1	chr18	24205226	24205426	+	1	NA	NA	NA	-18	NM_013814	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.090000	0.671642	
mm_109492.1	chr12	111445910	111446110	+	1	NA	NA	NA	3349	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.070000	0.606965	
mm_84149.1	chr9	59472152	59472352	-	1	NA	NA	NA	9489	NR_045640	100504377	Mm.446631	NR_045640		Gm20199	-	predicted gene, 20199	ncRNA	0.025000	0.402985	
mm_151488.1	chr19	58679450	58679650	+	1	NA	NA	NA	9185	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.025000	0.452736	-96(CCCTATTAAAAA,-,0.00)
mm_103524.1	chr11	77009076	77009276	-	1	NA	NA	NA	10579	NM_010484	15567	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	0.015000	0.457711	
mm_64636.1	chr7	3715623	3715823	-	1	NA	NA	NA	4659	NM_011095	18733	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	0.015000	0.537313	
mm_63625.1	chr7	128314690	128314890	+	1	NA	NA	NA	-16659	NM_145590	233913	Mm.220880	NM_145590	ENSMUSG00000030780	BC017158	-	cDNA sequence BC017158	protein-coding	0.020000	0.497512	
mm_17199.1	chr2	25468789	25468989	-	1	NA	NA	NA	860	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.010000	0.547264	
mm_63011.1	chr7	120982385	120982585	+	1	NA	NA	NA	-24	NM_028955	74466	Mm.189707	NM_028955	ENSMUSG00000030877	Mfsd13b	4933427G17Rik	major facilitator superfamily domain containing 13B	protein-coding	0.070000	0.567164	
mm_155806.1	chrX	99135999	99136199	+	1	NA	NA	NA	38	NM_010110	13641	Mm.3374	NM_010110	ENSMUSG00000031217	Efnb1	Cek5-L|EFL-3|Elk-L|Epl2|Eplg2|LERK-2|Lerk2|Stra1	ephrin B1	protein-coding	0.060000	0.606965	
mm_21468.1	chr2	160981582	160981782	-	1	NA	NA	NA	-69343	NM_182840	280635	Mm.330747	NM_182840	ENSMUSG00000050700	Emilin3	1110013O17Rik|EMILIN-3|EMILIN-5|EMILIN-T|Emilin5	elastin microfibril interfacer 3	protein-coding	0.025000	0.502488	
mm_159991.1	chr6	116107693	116107893	-	1	NA	NA	NA	85581	NM_177412	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.050000	0.641791	
mm_102698.1	chr11	65806927	65807127	-	1	NA	NA	NA	-148	NM_001302374	52712	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding	0.050000	0.592040	
mm_71079.1	chr8	34622356	34622556	+	1	NA	NA	NA	17860	NR_040706	330734	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	0.035000	0.452736	-33(GTCTATAAAGGC,+,0.00),-33(GTCTATAAAGGC,-,0.00)
mm_16242.1	chr2	173156988	173157188	+	1	NA	NA	NA	4015	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.045000	0.577114	-100(TGCCATTAAAAC,-,0.00)
mm_93110.1	chr10	91082695	91082895	-	1	NA	NA	NA	-52	NM_009684	11783	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	0.165000	0.766169	
mm_108856.1	chr12	98746891	98747091	+	1	NA	NA	NA	23	NM_029334	75553	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.165000	0.786070	
mm_49368.1	chr6	23248733	23248933	+	1	NA	NA	NA	-569	NM_028462	73191	Mm.55115	NM_028462	ENSMUSG00000029697	Fezf1	3110069A13Rik|Fez|Zfp312-like|fez-like	Fez family zinc finger 1	protein-coding	0.045000	0.577114	
mm_86198.1	chr9	119977518	119977718	-	1	NA	NA	NA	7040	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.005000	0.527363	
mm_43558.1	chr5	137625099	137625299	+	1	NA	NA	NA	-121	NM_027708	71176	Mm.474695	NM_027708	ENSMUSG00000089984	Fbxo24	4933422D21Rik|Fbx24	F-box protein 24	protein-coding	0.005000	0.477612	
mm_144959.1	chr18	37815356	37815556	+	1	NA	NA	NA	377	NM_033582	93707	Mm.247203	NM_033582	ENSMUSG00000023036	Pcdhgc4	-	protocadherin gamma subfamily C, 4	protein-coding	0.080000	0.616915	
mm_91269.1	chr10	24132388	24132588	-	1	NA	NA	NA	-16829	NM_016797	53331	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.020000	0.507463	
mm_162233.1	chrX	151890682	151890882	+	1	NA	NA	NA	-21564	NR_029732	387253		NR_029732	ENSMUSG00000065602	Mirlet7f-2	Mirlet7f2|Mirnlet7f2|let-7f-2	microRNA let7f-2	ncRNA	0.025000	0.437811	
mm_101039.1	chr11	8605148	8605348	-	1	NA	NA	NA	59287	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.030000	0.542289	
mm_151434.1	chr19	57273846	57274046	+	1	NA	NA	NA	-14	NR_045319	78120	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	0.010000	0.497512	
mm_142478.1	chr17	45686699	45686899	-	1	NA	NA	NA	427	NM_026732	68463	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	0.025000	0.512438	
mm_1085.1	chr1	59548767	59548967	+	1	NA	NA	NA	32603	NM_001013771	381260	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0.000000	0.447761	
mm_171009.1	chr2	82851195	82851395	-	1	NA	NA	NA	-793283	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.045000	0.482587	
mm_94739.1	chr11	21092455	21092655	+	1	NA	NA	NA	1231	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.010000	0.378109	
mm_170954.1	chr2	5379217	5379417	-	1	NA	NA	NA	-73	NR_030601	100124465		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.070000	0.492537	
mm_11762.1	chr2	38522232	38522432	+	1	NA	NA	NA	10456	NM_001159631	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.015000	0.492537	
mm_54559.1	chr6	37355192	37355392	-	1	NA	NA	NA	-55316	NM_001347104	320127	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.010000	0.343284	
mm_144668.1	chr18	34409337	34409537	+	1	NA	NA	NA	14	NM_016927	53871	Mm.445792	NM_016927	ENSMUSG00000014503	Pkd2l2	TRPP5	polycystic kidney disease 2-like 2	protein-coding	0.080000	0.631841	
mm_101986.1	chr11	50758083	50758283	-	1	NA	NA	NA	69548	NM_013922	30944	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding	0.035000	0.497512	-17(GCTTAAAAAGCC,+,0.00)
mm_38570.1	chr4	141790820	141791020	-	1	NA	NA	NA	-276	NM_172338	214063	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	0.055000	0.582090	
mm_77898.1	chr9	7348562	7348762	+	1	NA	NA	NA	1288	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.393035	
mm_129260.1	chr15	76723734	76723934	-	1	NA	NA	NA	11	NM_145472	223665	Mm.291713	NM_145472	ENSMUSG00000033707	C030006K11Rik	1110033I13Rik	RIKEN cDNA C030006K11 gene	protein-coding	0.080000	0.636816	
mm_113808.1	chr13	46502064	46502264	+	1	NA	NA	NA	261	NM_026056	67252	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding	0.095000	0.731343	
mm_49098.1	chr6	7845175	7845375	+	1	NA	NA	NA	51	NM_052993	94192	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.130000	0.741294	
mm_116333.1	chr13	38037826	38038026	-	1	NA	NA	NA	937	NM_024242	71340	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1 (yeast)	protein-coding	0.025000	0.502488	
mm_143162.1	chr17	57224259	57224459	-	1	NA	NA	NA	3777	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.030000	0.597015	
mm_111086.1	chr12	80260290	80260490	-	1	NA	NA	NA	-9	NM_001346669	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.095000	0.696517	
mm_154013.1	chr19	53188270	53188470	-	1	NA	NA	NA	44373	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.015000	0.522388	
mm_170076.1	chr17	33677287	33677487	-	1	NA	NA	NA	8071	NM_001109913	76936	Mm.311439	NM_029804	ENSMUSG00000059208	Hnrnpm	2610023M21Rik|AA409009|Hnrpm|mKIAA4193	heterogeneous nuclear ribonucleoprotein M	protein-coding	0.010000	0.368159	
mm_136089.1	chr16	84977851	84978051	-	1	NA	NA	NA	5740	NR_045889	100038614	Mm.441351	NR_045889		Gm10791	ENSMUSG00000074933	predicted gene 10791	ncRNA	0.010000	0.492537	
mm_105933.1	chr11	115133839	115134039	-	1	NA	NA	NA	53	NM_001347648	246746	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.025000	0.547264	-84(TGCTTTATATGC,-,0.00)
mm_159593.1	chr4	126147977	126148177	+	1	NA	NA	NA	74	NM_172145	230752	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0.045000	0.567164	
mm_161169.1	chr13	37827260	37827460	+	1	NA	NA	NA	-33	NM_001039188	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.120000	0.701493	
mm_7118.1	chr1	90153334	90153534	-	1	NA	NA	NA	-33	NM_029122	74918	Mm.317517	NM_029122	ENSMUSG00000026301	Iqca	4930465P12Rik|4930585L22Rik|BB288505|Iqca1	IQ motif containing with AAA domain	protein-coding	0.030000	0.601990	
mm_33501.1	chr4	130826095	130826295	+	1	NA	NA	NA	33658	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.010000	0.447761	
mm_57935.1	chr6	134645842	134646042	-	1	NA	NA	NA	5002	NM_026371	67774	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	0.025000	0.502488	
mm_47022.1	chr5	115490261	115490461	-	1	NA	NA	NA	-5877	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.045000	0.388060	
mm_70582.1	chr8	13167747	13167947	+	1	NA	NA	NA	8686	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.025000	0.452736	
mm_64654.1	chr7	4149705	4149905	-	1	NA	NA	NA	67	NM_175529	243813	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.045000	0.552239	
mm_91753.1	chr10	50589483	50589683	-	1	NA	NA	NA	-3086	NM_198007	77987	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.000000	0.442786	
mm_54957.1	chr6	48701861	48702061	-	1	NA	NA	NA	6283	NM_153175	231931	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	0.000000	0.388060	
mm_23962.1	chr3	84952271	84952471	+	1	NA	NA	NA	160	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.045000	0.547264	
mm_27705.1	chr3	67463712	67463912	-	1	NA	NA	NA	95	NM_016753	17035	Mm.2632	NM_016753	ENSMUSG00000047557	Lxn	-	latexin	protein-coding	0.065000	0.636816	
mm_166106.1	chr4	146909475	146909675	-	1	NA	NA	NA	-112275	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.030000	0.527363	
mm_129030.1	chr15	74958839	74959039	-	1	NA	NA	NA	3833	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.020000	0.497512	
mm_155055.1	chrX	42275174	42275374	+	1	NA	NA	NA	73419	NM_001290713	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.010000	0.308458	
mm_101152.1	chr11	16791210	16791410	-	1	NA	NA	NA	39107	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.020000	0.497512	
mm_101543.1	chr11	33537115	33537315	-	1	NA	NA	NA	-23469	NM_023146	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.005000	0.482587	
mm_146063.1	chr18	69686678	69686878	+	1	NA	NA	NA	-238781	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.010000	0.393035	
mm_166922.1	chr7	30981791	30981991	+	1	NA	NA	NA	-30	NM_001242647	76415	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.010000	0.552239	
mm_159509.1	chr4	55378233	55378433	+	1	NA	NA	NA	28291	NM_009011	19359	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	0.015000	0.427861	
mm_25276.1	chr3	105451871	105452071	+	1	NA	NA	NA	-359	NM_001039347	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	0.080000	0.696517	
mm_22395.1	chr2	181228249	181228449	-	1	NA	NA	NA	8333	NM_199312	332713	Mm.23349	NM_199312	ENSMUSG00000047841	BC051628	1700026M20Rik|Fndc11	cDNA sequence BC051628	protein-coding	0.005000	0.477612	-83(GCTTTTCTGGGG,+,0.00)
mm_158563.1	chrX	150440812	150441012	-	1	NA	NA	NA	-7	NM_001164686	382245	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding	0.020000	0.497512	-27(GGACTTAAAAGA,-,0.00)
mm_108352.1	chr12	80518947	80519147	+	1	NA	NA	NA	57	NM_001081421	108760	Mm.308296	NM_001081421	ENSMUSG00000021130	Galnt16	5730405L21Rik|AI415388|Galntl1|mpp-GalNAc-T16	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16	protein-coding	0.065000	0.656716	
mm_67906.1	chr7	99695547	99695747	-	1	NA	NA	NA	162	NM_001252531	101488	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0.015000	0.502488	
mm_100495.1	chr11	120467686	120467886	+	1	NA	NA	NA	151	NM_001159328	15239	Mm.7919	NM_008244	ENSMUSG00000025793	Hgs	Hgr|Hrs|ZFYVE8|tn	HGF-regulated tyrosine kinase substrate	protein-coding	0.120000	0.706468	
mm_78153.1	chr9	21019006	21019206	+	1	NA	NA	NA	3166	NM_010493	15894	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0.045000	0.601990	
mm_120260.1	chr14	63046901	63047101	+	1	NA	NA	NA	10	NM_001034910	619548	Mm.387101	NM_001034910	ENSMUSG00000054763	Defb42	BD-42|Defb44|mBD-42	defensin beta 42	protein-coding	0.015000	0.542289	
mm_132569.1	chr16	38131918	38132118	+	1	NA	NA	NA	-42758	NR_033221	414072	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.045000	0.557214	
mm_118535.1	chr14	16224896	16225096	+	1	NA	NA	NA	-24318	NM_021504	59007	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	0.000000	0.487562	
mm_122418.1	chr14	41185065	41185265	-	1	NA	NA	NA	33	NM_009160	20390	Mm.1321	NM_009160	ENSMUSG00000021795	Sftpd	AI573415|SP-D|Sfpd|Sftp4	surfactant associated protein D	protein-coding	0.010000	0.502488	-31(GCATAAATAGCC,+,0.00)
mm_87608.1	chr10	57784867	57785067	+	1	NA	NA	NA	44	NM_021272	12140	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.025000	0.472637	
mm_140227.1	chr17	83986297	83986497	+	1	NA	NA	NA	-12155	NR_130994	78148	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.045000	0.532338	-32(CGCCTTAAAAAC,-,0.00),-30(CCTTAAAAACAC,+,0.00)
mm_42494.1	chr5	115474555	115474755	+	1	NA	NA	NA	8389	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.040000	0.532338	
mm_129238.1	chr15	76625948	76626148	-	1	NA	NA	NA	36	NM_025842	66914	Mm.30028	NM_025842	ENSMUSG00000059323	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	0.085000	0.601990	
mm_99833.1	chr11	109011635	109011835	+	1	NA	NA	NA	91386	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.055000	0.587065	
mm_90043.1	chr10	115817407	115817607	+	1	NA	NA	NA	223	NM_001168679	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	0.030000	0.467662	
mm_8897.1	chr1	162898658	162898858	-	1	NA	NA	NA	-46	NM_018881	55990	Mm.10929	NM_018881	ENSMUSG00000040170	Fmo2	2310008D08Rik|2310042I22Rik|AW107733	flavin containing monooxygenase 2	protein-coding	0.010000	0.472637	
mm_103572.1	chr11	77893765	77893965	-	1	NA	NA	NA	7	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding	0.005000	0.572139	
mm_14864.1	chr2	148798728	148798928	+	1	NA	NA	NA	-11	NM_009978	13012	Mm.20435	NM_009978	ENSMUSG00000027442	Cst8	Cres|Cst-rs1	cystatin 8 (cystatin-related epididymal spermatogenic)	protein-coding	0.010000	0.532338	
mm_126069.1	chr15	77357853	77358053	+	1	NA	NA	NA	41157	NM_029419	75761	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	0.015000	0.482587	
mm_135862.1	chr16	60605149	60605349	-	1	NA	NA	NA	282	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0.080000	0.686567	
mm_165705.1	chr3	96823987	96824187	+	1	NA	NA	NA	5264	NM_001163497	54215	Mm.34693	NM_018767	ENSMUSG00000038304	Cd160	AU045688|By55	CD160 antigen	protein-coding	0.015000	0.477612	
mm_132756.1	chr16	44347338	44347538	+	1	NA	NA	NA	37	NM_144550	212514	Mm.24035	NM_144550	ENSMUSG00000043065	Spice1	Ccdc52|D16Ertd480e	spindle and centriole associated protein 1	protein-coding	0.095000	0.676617	
mm_76655.1	chr8	93197646	93197846	-	1	NA	NA	NA	58	NM_053200	104158	Mm.292803	NM_053200	ENSMUSG00000056973	Ces1d	Ces3|TGH	carboxylesterase 1D	protein-coding	0.010000	0.497512	
mm_70737.1	chr8	19140659	19140859	+	1	NA	NA	NA	0	NM_001034905	546038	Mm.99206	NM_001034905	ENSMUSG00000059463	Spag11b	EG546038|Ep2c/h|Spag11c/h	sperm associated antigen 11B	protein-coding	0.005000	0.527363	
mm_27010.1	chr3	25872508	25872708	-	1	NA	NA	NA	280699	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.313433	
mm_65469.1	chr7	25476548	25476748	-	1	NA	NA	NA	977	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.015000	0.522388	
mm_106663.1	chr11	121354287	121354487	-	1	NA	NA	NA	60	NM_025793	66840	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0.150000	0.701493	
mm_120477.1	chr14	65975510	65975710	+	1	NA	NA	NA	7127	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.030000	0.562189	
mm_96492.1	chr11	67798194	67798394	+	1	NA	NA	NA	23	NM_001013013	68460	Mm.22167	NM_001013013	ENSMUSG00000033044	Dhrs7c	1110001P11Rik|AI120487|SRP-35	dehydrogenase/reductase (SDR family) member 7C	protein-coding	0.005000	0.417910	
mm_145300.1	chr18	53323280	53323480	+	1	NA	NA	NA	77718	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.005000	0.338308	
mm_3928.1	chr1	162710325	162710525	+	1	NA	NA	NA	30131	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.010000	0.467662	
mm_141915.1	chr17	34999145	34999345	-	1	NA	NA	NA	1501	NM_033075	110956	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0.020000	0.502488	
mm_138124.1	chr17	34153102	34153302	+	1	NA	NA	NA	11	NM_010387	14999	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	0.010000	0.502488	
mm_28102.1	chr3	86546927	86547127	-	1	NA	NA	NA	1256	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.065000	0.626866	
mm_82826.1	chr9	31131697	31131897	-	1	NA	NA	NA	2	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.090000	0.726368	
mm_88521.1	chr10	78054796	78054996	+	1	NA	NA	NA	-439	NM_001284198	54427	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.005000	0.482587	
mm_171655.1	chr4	41275032	41275232	-	1	NA	NA	NA	3	NM_026872	68926	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0.100000	0.641791	
mm_34537.1	chr4	149496878	149497078	+	1	NA	NA	NA	11645	NM_026963	69151	Mm.464434	NM_026963	ENSMUSG00000028990	Lzic	1810030J04Rik|AW047580	leucine zipper and CTNNBIP1 domain containing	protein-coding	0.005000	0.497512	
mm_65150.1	chr7	19604333	19604533	-	1	NA	NA	NA	53	NR_125832	53609	Mm.20913	NM_016680	ENSMUSG00000061028	Clasrp	Clasp|Sfrs16|Srsf16|Swap2	CLK4-associating serine/arginine rich protein	protein-coding	0.130000	0.691542	
mm_119194.1	chr14	32513466	32513666	+	1	NA	NA	NA	45	NM_001081221	319955	Mm.318310	NM_177043	ENSMUSG00000054051	Ercc6	4732403I04|C130058G22Rik|CSB	excision repair cross-complementing rodent repair deficiency, complementation group 6	protein-coding	0.105000	0.651741	
mm_35136.1	chr4	11386483	11386683	-	1	NA	NA	NA	195	NM_001347052	207920	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	0.035000	0.601990	
mm_99583.1	chr11	104282282	104282482	+	1	NA	NA	NA	50946	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.005000	0.477612	88(TGGCTTAAAAGG,-,0.00)
mm_80496.1	chr9	78481969	78482169	+	1	NA	NA	NA	-345	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.065000	0.616915	
mm_109737.1	chr12	117153941	117154141	+	1	NA	NA	NA	-2772	NR_033538	100038689	Mm.445351	NR_033538	ENSMUSG00000099907	Gm10421	ENSMUSG00000072792	predicted gene 10421	ncRNA	0.115000	0.726368	
mm_150750.1	chr19	43792291	43792491	+	1	NA	NA	NA	10083	NM_013806	12780	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0.010000	0.467662	
mm_27750.1	chr3	69319175	69319375	-	1	NA	NA	NA	2357	NM_178726	242083	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	0.005000	0.447761	
mm_96000.1	chr11	59306828	59307028	+	1	NA	NA	NA	-2	NM_139298	216795	Mm.218794	NM_139298	ENSMUSG00000000126	Wnt9a	Wnt14	wingless-type MMTV integration site family, member 9A	protein-coding	0.180000	0.805970	-33(CGCTATAAGAGG,-,0.00)
mm_9107.1	chr1	170110626	170110826	-	1	NA	NA	NA	-21782	NM_022563	18214	Mm.229249	NM_022563	ENSMUSG00000026674	Ddr2	AW495251|Ntrkr3|tyro10	discoidin domain receptor family, member 2	protein-coding	0.030000	0.527363	
mm_39741.1	chr5	29569138	29569338	+	1	NA	NA	NA	-4	NM_133907	100763	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	0.175000	0.741294	
mm_6394.1	chr1	72858956	72859156	-	1	NA	NA	NA	15809	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.025000	0.527363	
mm_37300.1	chr4	119232589	119232789	-	1	NA	NA	NA	35	NM_001012400	230696	Mm.473722	NM_001012400	ENSMUSG00000078584	AU022252	AI450326	expressed sequence AU022252	protein-coding	0.080000	0.626866	
mm_96410.1	chr11	67254361	67254561	+	1	NA	NA	NA	16649	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.025000	0.452736	
mm_146724.1	chr18	15064269	15064469	-	1	NA	NA	NA	-787	NM_001142731	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.050000	0.577114	
mm_63293.1	chr7	126807619	126807819	+	1	NA	NA	NA	-7272	NM_001177308	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.015000	0.572139	
mm_5910.1	chr1	55010236	55010436	-	1	NA	NA	NA	17142	NM_031179	81898	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	0.000000	0.303483	
mm_39426.1	chr5	16296722	16296922	+	1	NA	NA	NA	-256673	NM_001289460	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.000000	0.532338	
mm_108831.1	chr12	95750326	95750526	+	1	NA	NA	NA	58200	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.000000	0.283582	
mm_21192.1	chr2	155407644	155407844	-	1	NA	NA	NA	25888	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.005000	0.522388	
mm_167117.1	chr7	118974675	118974875	-	1	NA	NA	NA	20436	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.000000	0.537313	
mm_71511.1	chr8	46846028	46846228	+	1	NA	NA	NA	106383	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.030000	0.582090	
mm_64686.1	chr7	4514463	4514663	-	1	NA	NA	NA	1412	NM_001277903	21955	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0.010000	0.572139	
mm_30696.1	chr4	11694690	11694890	+	1	NA	NA	NA	-9657	NM_010276	14579	Mm.247486	NM_010276	ENSMUSG00000028214	Gem	AV020497	GTP binding protein (gene overexpressed in skeletal muscle)	protein-coding	0.020000	0.557214	
mm_136103.1	chr16	85141151	85141351	-	1	NA	NA	NA	32456	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.010000	0.492537	
mm_107000.1	chr12	11279608	11279808	+	1	NA	NA	NA	13822	NM_025695	67241	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	0.015000	0.358209	
mm_46151.1	chr5	93306354	93306554	-	1	NA	NA	NA	38881	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0.005000	0.492537	
mm_32604.1	chr4	112006159	112006359	+	1	NA	NA	NA	-10	NM_001102662	639781	Mm.398873	NM_001102662	ENSMUSG00000089773	Skint1	OTTMUSG00000008542|Skint-1	selection and upkeep of intraepithelial T cells 1	protein-coding	0.000000	0.427861	
mm_166064.1	chr4	134470005	134470205	+	1	NA	NA	NA	1785	NM_019641	16765	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	0.010000	0.417910	
mm_31275.1	chr4	45798805	45799005	+	1	NA	NA	NA	-117	NM_028270	72535	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	0.010000	0.517413	
mm_66758.1	chr7	46715600	46715800	-	1	NA	NA	NA	-24	NM_011315	20210	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	0.015000	0.467662	
mm_120272.1	chr14	63124462	63124662	+	1	NA	NA	NA	2100	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.005000	0.432836	
mm_4868.1	chr1	187742438	187742638	+	1	NA	NA	NA	133532	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.005000	0.383085	
mm_161733.1	chr17	30954507	30954707	+	1	NA	NA	NA	-76	NM_177465	52020	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0.025000	0.606965	
mm_99196.1	chr11	101011895	101012095	+	1	NA	NA	NA	2543	NM_001243051	11975	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0.010000	0.313433	
mm_70990.1	chr8	27343887	27344087	+	1	NA	NA	NA	-407	NM_001013609	541463	Mm.84066	NM_001013609	ENSMUSG00000071138	Tex24	1700108N07Rik|TESF-1	testis expressed gene 24	protein-coding	0.010000	0.472637	-34(ATGTATAAAGGG,-,0.00)
mm_31048.1	chr4	41135889	41136089	+	1	NA	NA	NA	-32	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.135000	0.820896	
mm_3977.1	chr1	164248974	164249174	+	1	NA	NA	NA	28	NM_001276455	116914	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA	solute carrier family 19 (thiamine transporter), member 2	protein-coding	0.140000	0.761194	
mm_171443.1	chr4	143522108	143522308	+	1	NA	NA	NA	10865	NM_001039595	545693	Mm.441388	NM_001039595	ENSMUSG00000095409	Gm13043	OTTMUSG00000010136	predicted gene 13043	protein-coding	0.015000	0.472637	
mm_130988.1	chr15	103366684	103366884	-	1	NA	NA	NA	7	NM_010577	16402	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0.085000	0.696517	
mm_118277.1	chr13	112652173	112652373	-	1	NA	NA	NA	37	NM_010029	13206	Mm.12818	NM_010029	ENSMUSG00000021758	Ddx4	AV206478|Mvh|VASA	DEAD (Asp-Glu-Ala-Asp) box polypeptide 4	protein-coding	0.135000	0.771144	
mm_115665.1	chr13	12464855	12465055	-	1	NA	NA	NA	-3217	NM_001291057	56048	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.005000	0.373134	
mm_148326.1	chr18	84085881	84086081	-	1	NA	NA	NA	581	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.075000	0.606965	
mm_135972.1	chr16	75016051	75016251	-	1	NA	NA	NA	569910	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.005000	0.422886	
mm_166665.1	chr6	90552305	90552505	+	1	NA	NA	NA	1557	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.000000	0.442786	
mm_77062.1	chr8	109693162	109693362	-	1	NA	NA	NA	32	NM_028018	71955	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0.095000	0.641791	
mm_22504.1	chr3	7428955	7429155	+	1	NA	NA	NA	62451	NM_008862	18767	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	0.030000	0.402985	-34(CACTATAAAAAC,-,0.00)
mm_30159.1	chr3	142882349	142882549	-	1	NA	NA	NA	-445	NM_178654	109333	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	0.090000	0.676617	
mm_118197.1	chr13	107871136	107871336	-	1	NA	NA	NA	18828	NM_145456	67263	Mm.490418	NM_145456	ENSMUSG00000032846	Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.005000	0.338308	
mm_91564.1	chr10	40025170	40025370	-	1	NA	NA	NA	-2	NM_144821	215929	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.060000	0.601990	
mm_166501.1	chr6	4537876	4538076	+	1	NA	NA	NA	32358	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.030000	0.522388	
mm_6904.1	chr1	84824819	84825019	-	1	NA	NA	NA	14385	NM_133975	14897	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.010000	0.323383	24(GGGCCTTAAAAG,-,0.00),25(GGCCTTAAAAGG,-,0.00),26(GCCTTAAAAGGC,+,0.00),27(CCTTAAAAGGCT,+,0.00),35(GGCTTTAAAAAA,-,0.00),36(GCTTTAAAAAAC,+,0.00)
mm_138447.1	chr17	35135401	35135601	+	1	NA	NA	NA	-213	NM_001252469	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.080000	0.616915	
mm_53573.1	chr6	137410622	137410822	+	1	NA	NA	NA	1	NM_001164403	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.005000	0.427861	-59(CTATTAATAGTC,+,0.00)
mm_49604.1	chr6	30742453	30742653	+	1	NA	NA	NA	1254	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.020000	0.572139	
mm_96926.1	chr11	70510150	70510350	+	1	NA	NA	NA	4366	NM_001013607	327956	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	0.045000	0.577114	
mm_35483.1	chr4	40854443	40854643	-	1	NA	NA	NA	-6	NM_022305	14595	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0.065000	0.597015	
mm_157344.1	chrX	36903368	36903568	-	1	NA	NA	NA	-569	NM_029891	77286	Mm.21649	NM_029891	ENSMUSG00000044149	Nkrf	9430034D17Rik|AW124770|C80287	NF-kappaB repressing factor	protein-coding	0.085000	0.592040	
mm_20071.1	chr2	120534795	120534995	-	1	NA	NA	NA	28936	NM_011743	20402	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|H3a|Sh3bp3|Znf106|sirm	zinc finger protein 106	protein-coding	0.020000	0.447761	
mm_132027.1	chr16	27388754	27388954	+	1	NA	NA	NA	-102	NM_001025615	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.105000	0.756219	
mm_37372.1	chr4	120965741	120965941	-	1	NA	NA	NA	7481	NR_105982	102465614		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.020000	0.437811	76(GTGTTTATAAGA,-,0.00)
mm_123629.1	chr14	68491574	68491774	-	1	NA	NA	NA	42015	NM_007402	11500	Mm.261495	NM_007402	ENSMUSG00000022056	Adam7	ADAM 7|EAP1|EAPI	a disintegrin and metallopeptidase domain 7	protein-coding	0.000000	0.393035	
mm_99763.1	chr11	106788592	106788792	+	1	NA	NA	NA	-198	NM_007840	13207	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0.125000	0.686567	
mm_94840.1	chr11	23666115	23666315	+	1	NA	NA	NA	239	NM_028304	74467	Mm.29536	NM_028304	ENSMUSG00000020280	Pus10	2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139	pseudouridylate synthase 10	protein-coding	0.075000	0.611940	-35(GACCCTTTAAGG,-,0.00),-33(CCCTTTAAGGCT,+,0.00)
mm_25946.1	chr3	131564744	131564944	+	1	NA	NA	NA	76	NM_011863	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.100000	0.726368	
mm_155327.1	chrX	65047526	65047726	+	1	NA	NA	NA	-18	NM_027302	70062	Mm.45791	NM_027302	ENSMUSG00000031181	Ctag2	1700030B21Rik	cancer/testis antigen 2	protein-coding	0.020000	0.512438	
mm_28561.1	chr3	93443936	93444136	-	1	NA	NA	NA	1706	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.095000	0.636816	
mm_99097.1	chr11	99932850	99933050	+	1	NA	NA	NA	-3341	NM_001025244	432602	Mm.246878	NM_001025244	ENSMUSG00000051481	Krtap31-2	OTTMUSG00000002177	keratin associated protein 31-2	protein-coding	0.045000	0.522388	
mm_22190.1	chr2	173276064	173276264	-	1	NA	NA	NA	369	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.150000	0.776119	
mm_164482.1	chr16	75909049	75909249	-	1	NA	NA	NA	117	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.005000	0.402985	
mm_10934.1	chr2	25468006	25468206	+	1	NA	NA	NA	1643	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.030000	0.597015	
mm_133839.1	chr16	96200390	96200590	+	1	NA	NA	NA	20	NM_015825	50795	Mm.28638	NM_015825	ENSMUSG00000040666	Sh3bgr	5430437A18Rik	SH3-binding domain glutamic acid-rich protein	protein-coding	0.030000	0.562189	-71(GGCCTTTTAGGG,-,0.00),-69(CCTTTTAGGGAC,+,0.00),-49(GGCCTTTAAAGT,-,0.00),-48(GCCTTTAAAGTG,+,0.00)
mm_28481.1	chr3	92456771	92456971	-	1	NA	NA	NA	1849	NM_001204427	20766	Mm.57092	NM_011478	ENSMUSG00000045539	Sprr3	SPR3	small proline-rich protein 3	protein-coding	0.000000	0.567164	
mm_63704.1	chr7	130646116	130646316	+	1	NA	NA	NA	-46340	NM_001347637	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.105000	0.721393	
mm_82751.1	chr9	26829418	26829618	-	1	NA	NA	NA	-23050	NM_001310768	244757	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0.005000	0.363184	
mm_130823.1	chr15	101845667	101845867	-	1	NA	NA	NA	5019	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.005000	0.422886	
mm_27117.1	chr3	31095736	31095936	-	1	NA	NA	NA	778	NM_001039090	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.035000	0.631841	
mm_23676.1	chr3	68584096	68584296	+	1	NA	NA	NA	11828	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.020000	0.601990	
mm_84871.1	chr9	79691239	79691439	-	1	NA	NA	NA	27383	NM_001290308	12816	Mm.3819	NM_007730	ENSMUSG00000032332	Col12a1	-	collagen, type XII, alpha 1	protein-coding	0.000000	0.308458	-62(CACTTTTAAAAC,-,0.00)
mm_83289.1	chr9	43116443	43116643	-	1	NA	NA	NA	27	NM_001034863	235300	Mm.261326	NM_001034863	ENSMUSG00000048503	Tmem136	AA396355|Gm184	transmembrane protein 136	protein-coding	0.095000	0.701493	
mm_163804.1	chr14	19415841	19416041	-	1	NA	NA	NA	186646	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.343284	
mm_161237.1	chr13	95478334	95478534	-	1	NA	NA	NA	221	NM_001081159	268686	Mm.291249	NM_001081159	ENSMUSG00000021679	S100z	Gm625	S100 calcium binding protein, zeta	protein-coding	0.015000	0.512438	
mm_90266.1	chr10	122678886	122679086	+	1	NA	NA	NA	224	NM_001110218	319468	Mm.489703	NM_176919	ENSMUSG00000034613	Ppm1h	A430075L18Rik|ARHCL1|C030002B11Rik	protein phosphatase 1H (PP2C domain containing)	protein-coding	0.140000	0.781095	
mm_12704.1	chr2	76539634	76539834	+	1	NA	NA	NA	40728	NM_001290735	99031	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding	0.000000	0.447761	
mm_38539.1	chr4	141581292	141581492	-	1	NA	NA	NA	18532	NM_001163256	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.015000	0.402985	
mm_51950.1	chr6	91739076	91739276	+	1	NA	NA	NA	55109	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.000000	0.462687	
mm_127143.1	chr15	98398343	98398543	+	1	NA	NA	NA	-2	NR_015496	73302	Mm.272760	NR_015496	ENSMUSG00000099353	1700031M16Rik	4930413L20Rik	RIKEN cDNA 1700031M16 gene	ncRNA	0.015000	0.532338	
mm_100813.1	chr11	5099133	5099333	-	1	NA	NA	NA	-40	NM_001290492	279766	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0.120000	0.651741	
mm_165814.1	chr3	145758732	145758932	+	1	NA	NA	NA	140	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.140000	0.761194	
mm_133857.1	chr16	96273494	96273694	+	1	NA	NA	NA	-7438	NM_033149	93961	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	0.015000	0.522388	
mm_171810.1	chr5	13121391	13121591	+	1	NA	NA	NA	-275293	NM_001243072	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.005000	0.383085	-29(GCCTTTTTAAGA,-,0.00)
mm_58857.1	chr7	16893016	16893216	+	1	NA	NA	NA	1330	NM_010320	14709	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	0.020000	0.497512	
mm_173116.1	chrX	160132057	160132257	-	1	NA	NA	NA	6273	NM_008810	18597	Mm.34775	NM_008810	ENSMUSG00000031299	Pdha1	Pdha-1	pyruvate dehydrogenase E1 alpha 1	protein-coding	0.025000	0.512438	
mm_126121.1	chr15	78325752	78325952	+	1	NA	NA	NA	-138	NM_007780	12983	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.010000	0.527363	
mm_64141.1	chr7	141216091	141216291	+	1	NA	NA	NA	331	NM_025886	66985	Mm.21202	NM_025886	ENSMUSG00000038618	Rassf7	2400009B11Rik|AW210608	Ras association (RalGDS/AF-6) domain family (N-terminal) member 7	protein-coding	0.065000	0.701493	
mm_85994.1	chr9	112211652	112211852	-	1	NA	NA	NA	5509	NM_001177617	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.010000	0.507463	
mm_23473.1	chr3	60480703	60480903	+	1	NA	NA	NA	7973	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.000000	0.402985	
mm_46877.1	chr5	113843860	113844060	-	1	NA	NA	NA	-13459	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.020000	0.388060	
mm_47854.1	chr5	134552297	134552497	-	1	NA	NA	NA	37	NM_001039162	269713	Mm.255138	NM_009990	ENSMUSG00000063146	Clip2	B230327O20|CLIP-115|Clip1|Cyln2|WSCR4|mKIAA0291|wbscr4	CAP-GLY domain containing linker protein 2	protein-coding	0.110000	0.731343	
mm_149070.1	chr19	8871479	8871679	+	1	NA	NA	NA	20	NM_146093	225896	Mm.27839	NM_146093	ENSMUSG00000071655	Ubxn1	2B28|4930455J02Rik|D19Ertd721e|T25529	UBX domain protein 1	protein-coding	0.110000	0.716418	
mm_17833.1	chr2	34278218	34278418	-	1	NA	NA	NA	93727	NM_001290576	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.000000	0.298507	
mm_76459.1	chr8	85327917	85328117	-	1	NA	NA	NA	28385	NR_028268	56452	Mm.29709	NM_019716	ENSMUSG00000031697	Orc6	6720420I10Rik|Orc6l	origin recognition complex, subunit 6	protein-coding	0.000000	0.512438	
mm_75886.1	chr8	70839434	70839634	-	1	NA	NA	NA	186	NM_027560	70807	Mm.24215	NM_027560	ENSMUSG00000002910	Arrdc2	4632416I05Rik|Ilad1	arrestin domain containing 2	protein-coding	0.100000	0.616915	
mm_42229.1	chr5	113510802	113511002	+	1	NA	NA	NA	-39518	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.035000	0.621891	
mm_106846.1	chr12	8007758	8007958	+	1	NA	NA	NA	30181	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.020000	0.452736	
mm_169767.1	chr15	99819947	99820147	-	1	NA	NA	NA	102	NM_023063	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.020000	0.502488	
mm_113694.1	chr13	43125750	43125950	+	1	NA	NA	NA	3011	NM_001005748	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.010000	0.487562	
mm_163222.1	chr11	102097210	102097410	+	1	NA	NA	NA	3990	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.045000	0.601990	
mm_146099.1	chr18	73878442	73878642	+	1	NA	NA	NA	19157	NM_001305882	71263	Mm.126220	NM_027741	ENSMUSG00000064036	Mro	4930507C04Rik|4933435E20Rik	maestro	protein-coding	0.010000	0.303483	
mm_172572.1	chr8	112321029	112321229	+	1	NA	NA	NA	248446	NR_132433	102640845	Mm.405615	NR_132433	ENSMUSG00000098075	Gm26994	-	predicted gene, 26994	ncRNA	0.030000	0.487562	-28(CTTTAAATACTC,+,0.00)
mm_28040.1	chr3	83841462	83841662	-	1	NA	NA	NA	46	NM_011905	24088	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.060000	0.676617	
mm_107324.1	chr12	31446908	31447108	+	1	NA	NA	NA	8789	NM_021353	13487	Mm.490454	NM_021353	ENSMUSG00000001225	Slc26a3	9030623B18Rik|9130013M11Rik|AV376035|Dra	solute carrier family 26, member 3	protein-coding	0.010000	0.427861	
mm_72265.1	chr8	75097129	75097329	+	1	NA	NA	NA	3611	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.025000	0.552239	
mm_150752.1	chr19	43808672	43808872	+	1	NA	NA	NA	26464	NM_013806	12780	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0.010000	0.388060	
mm_154211.1	chr19	59170295	59170495	-	1	NA	NA	NA	-366	NM_009501	22326	Mm.23801	NM_009501	ENSMUSG00000006270	Vax1	-	ventral anterior homeobox 1	protein-coding	0.090000	0.572139	
mm_2601.1	chr1	120006978	120007178	+	1	NA	NA	NA	98	NM_001311077	319229	Mm.189223	NM_001012322	ENSMUSG00000026387	Sctr	6530402O03Rik	secretin receptor	protein-coding	0.030000	0.597015	
mm_115720.1	chr13	15980301	15980501	-	1	NA	NA	NA	-31450	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.333333	
mm_153709.1	chr19	44397824	44398024	-	1	NA	NA	NA	9785	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.025000	0.462687	
mm_68158.1	chr7	102565350	102565550	-	1	NA	NA	NA	32	NM_001082552	20821	Mm.321227	NM_009277	ENSMUSG00000030966	Trim21	Ro52|Ssa1	tripartite motif-containing 21	protein-coding	0.010000	0.557214	
mm_169157.1	chr13	64152400	64152600	-	1	NA	NA	NA	699	NM_175494	238673	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	0.140000	0.756219	
mm_108642.1	chr12	85824864	85825064	+	1	NA	NA	NA	14	NM_001081423	320244	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0.120000	0.696517	
mm_135865.1	chr16	60605500	60605700	-	1	NA	NA	NA	-69	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0.060000	0.621891	
mm_101703.1	chr11	40755381	40755581	-	1	NA	NA	NA	-195	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.035000	0.497512	
mm_157221.1	chrX	13345214	13345414	-	1	NA	NA	NA	64292	NM_010028	13205	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	0.025000	0.487562	
mm_89526.1	chr10	94463739	94463939	+	1	NA	NA	NA	-51018	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.000000	0.417910	
mm_84669.1	chr9	72007914	72008114	-	1	NA	NA	NA	44573	NR_029879	723889		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.000000	0.328358	
mm_97131.1	chr11	74981684	74981884	+	1	NA	NA	NA	55912	NM_001002764	103677	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.000000	0.492537	-35(CCCTTTAGACCC,+,0.00)
mm_40072.1	chr5	34336290	34336490	+	1	NA	NA	NA	10	NM_001304269	19822	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0.075000	0.567164	
mm_24521.1	chr3	92957288	92957488	+	1	NA	NA	NA	-2	NM_001270426	630994	Mm.455176	NM_001270426	ENSMUSG00000043472	Lce3d	ENSMUSG00000043472|Gm9782	late cornified envelope 3D	protein-coding	0.005000	0.497512	
mm_32591.1	chr4	111719963	111720163	+	1	NA	NA	NA	53	NM_026470	67946	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	0.115000	0.751244	
mm_92069.1	chr10	62578319	62578519	-	1	NA	NA	NA	38	NM_028197	72320	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.120000	0.666667	
mm_165746.1	chr3	107760077	107760277	-	1	NA	NA	NA	292	NM_001113530	12977	Mm.795	NM_007778	ENSMUSG00000014599	Csf1	C87615|Csfm|MCSF|op	colony stimulating factor 1 (macrophage)	protein-coding	0.105000	0.686567	-98(CCGCTTAAAAGG,-,0.00),-96(GCTTAAAAGGCT,+,0.00)
mm_116539.1	chr13	45923330	45923530	-	1	NA	NA	NA	41561	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.005000	0.447761	
mm_114808.1	chr13	91461102	91461302	+	1	NA	NA	NA	105	NM_024186	66970	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.105000	0.676617	
mm_115722.1	chr13	16023319	16023519	-	1	NA	NA	NA	11568	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.393035	
mm_70345.1	chr8	4678366	4678566	+	1	NA	NA	NA	65296	NM_145591	233987	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.130000	0.666667	
mm_106982.1	chr12	9580726	9580926	+	1	NA	NA	NA	6384	NM_011859	23967	Mm.45055	NM_011859	ENSMUSG00000048387	Osr1	Odd1|Osr	odd-skipped related 1 (Drosophila)	protein-coding	0.060000	0.542289	
mm_136330.1	chr16	92398728	92398928	-	1	NA	NA	NA	1250	NM_019466	54720	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.010000	0.512438	
mm_154890.1	chrX	20842239	20842439	+	1	NA	NA	NA	-6204	NM_009703	11836	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	0.015000	0.472637	-47(CGTTTTTAAAGG,-,0.00),-46(GTTTTTAAAGGC,+,0.00),-45(TTTTTAAAGGCC,+,0.00)
mm_18662.1	chr2	70745933	70746133	-	1	NA	NA	NA	79447	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.010000	0.303483	
mm_167536.1	chr9	21797970	21798170	+	1	NA	NA	NA	476	NM_145611	235041	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	0.080000	0.746269	
mm_60317.1	chr7	44207218	44207418	+	1	NA	NA	NA	-115	NM_010915	18048	Mm.440886	NM_010915	ENSMUSG00000066513	Klk1b4	Ngfa|alpha-NGF|mGk-4	kallikrein 1-related pepidase b4	protein-coding	0.010000	0.577114	63(GGGTTTTAAAGT,-,0.00)
mm_94118.1	chr10	128626632	128626832	-	1	NA	NA	NA	-226	NM_013765	27370	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0.040000	0.412935	53(CCATTTCTAGGG,+,0.00)
mm_172268.1	chr6	78155444	78155644	+	1	NA	NA	NA	-175877	NM_009819	12386	Mm.34637	NM_009819	ENSMUSG00000063063	Ctnna2	AI481747|Catna|Catna2|cdf|chp	catenin (cadherin associated protein), alpha 2	protein-coding	0.040000	0.616915	
mm_29093.1	chr3	104777133	104777333	-	1	NA	NA	NA	314	NM_183224	329731	Mm.389494	NM_183224	ENSMUSG00000055865	Fam19a3	7530404M11Rik|TAFA3|Tafa-3	family with sequence similarity 19, member A3	protein-coding	0.035000	0.522388	
mm_14224.1	chr2	127363166	127363366	+	1	NA	NA	NA	-20	NM_009633	11552	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	0.100000	0.671642	
mm_158628.1	chrX	153037380	153037580	-	1	NA	NA	NA	83	NM_023788	75625	Mm.6890	NM_023788	ENSMUSG00000047238	Mageh1	2010107K23Rik|APR-1|APR1	melanoma antigen, family H, 1	protein-coding	0.075000	0.606965	
mm_72967.1	chr8	92855260	92855460	+	1	NA	NA	NA	10	NM_173014	270084	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	A330042H22|Aytl1|Aytl1a|lpafat1	lysophosphatidylcholine acyltransferase 2	protein-coding	0.080000	0.686567	
mm_80192.1	chr9	72395867	72396067	+	1	NA	NA	NA	-42562	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.005000	0.507463	
mm_110328.1	chr12	35021335	35021535	-	1	NA	NA	NA	-25754	NM_001014973	217463	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0.020000	0.492537	-4(CACTCTTAAAGA,-,0.00)
mm_13491.1	chr2	106693411	106693611	+	1	NA	NA	NA	52	NM_001143683	77015	Mm.45628	NM_029837	ENSMUSG00000016386	Mpped2	239Fb|2700082O15Rik|AV354767|AW060960	metallophosphoesterase domain containing 2	protein-coding	0.085000	0.706468	
mm_61625.1	chr7	80213849	80214049	+	1	NA	NA	NA	18856	NM_001291276	23991	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0.010000	0.427861	
mm_139290.1	chr17	48300353	48300553	+	1	NA	NA	NA	415	NM_001033405	328833	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0.020000	0.592040	
mm_43164.1	chr5	127170464	127170664	+	1	NA	NA	NA	-1	NR_045371	75916	Mm.394659	NR_045371	ENSMUSG00000105308	4930572K03Rik	-	RIKEN cDNA 4930572K03 gene	ncRNA	0.000000	0.442786	
mm_96805.1	chr11	69981428	69981628	+	1	NA	NA	NA	-293	NM_018740	54351	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.095000	0.681592	
mm_47388.1	chr5	123012778	123012978	-	1	NA	NA	NA	-2196	NM_175423	109305	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.020000	0.547264	
mm_95799.1	chr11	55108935	55109135	+	1	NA	NA	NA	11050	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.015000	0.547264	
mm_157651.1	chrX	57326193	57326393	-	1	NA	NA	NA	12436	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	0.070000	0.691542	
mm_43577.1	chr5	137746144	137746344	+	1	NA	NA	NA	275	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.060000	0.567164	
mm_42476.1	chr5	115466082	115466282	+	1	NA	NA	NA	-84	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.015000	0.527363	55(ATGTATAAAAGA,-,0.00)
mm_56254.1	chr6	90781184	90781384	-	1	NA	NA	NA	28839	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.000000	0.477612	
mm_102956.1	chr11	69664378	69664578	-	1	NA	NA	NA	1435	NR_035455	100316840		NR_035455	ENSMUSG00000088752	Mir1934	mir-1934|mmu-mir-1934	microRNA 1934	ncRNA	0.035000	0.592040	
mm_122276.1	chr14	34403643	34403843	-	1	NA	NA	NA	28239	NM_153127	105450	Mm.272673	NM_153127	ENSMUSG00000041445	Mmrn2	AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1	multimerin 2	protein-coding	0.000000	0.368159	
mm_81345.1	chr9	108559928	108560128	+	1	NA	NA	NA	-473	NM_011830	23918	Mm.6065	NM_011830	ENSMUSG00000062867	Impdh2	IMPD	inosine 5'-phosphate dehydrogenase 2	protein-coding	0.005000	0.328358	
mm_109473.1	chr12	111421374	111421574	+	1	NA	NA	NA	4029	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.015000	0.572139	
mm_132434.1	chr16	35871524	35871724	+	1	NA	NA	NA	-242	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.015000	0.592040	
mm_155053.1	chrX	42238498	42238698	+	1	NA	NA	NA	36743	NM_001290713	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.020000	0.353234	
mm_24483.1	chr3	92024434	92024634	+	1	NA	NA	NA	9951	NM_207247	242100	Mm.297406	NM_207247	ENSMUSG00000042244	Pglyrp3	Gm420	peptidoglycan recognition protein 3	protein-coding	0.060000	0.512438	
mm_18814.1	chr2	74562700	74562900	-	1	NA	NA	NA	16148	NM_001110209	69605	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	0.000000	0.363184	
mm_52398.1	chr6	113307751	113307951	+	1	NA	NA	NA	714	NM_001282126	78783	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.045000	0.582090	
mm_50480.1	chr6	48988149	48988349	+	1	NA	NA	NA	1388	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.015000	0.577114	
mm_53022.1	chr6	124279704	124279904	+	1	NA	NA	NA	-24847	NM_001170395	93671	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.045000	0.497512	
mm_60364.1	chr7	44441906	44442106	+	1	NA	NA	NA	-481	NM_198250	272381	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	0.035000	0.621891	
mm_96775.1	chr11	69935850	69936050	+	1	NA	NA	NA	51	NM_016875	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.160000	0.820896	
mm_28677.1	chr3	95314995	95315195	-	1	NA	NA	NA	-95	NM_029789	76893	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.115000	0.771144	
mm_84665.1	chr9	71976020	71976220	-	1	NA	NA	NA	12679	NR_029879	723889		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.015000	0.432836	
mm_23869.1	chr3	83028509	83028709	+	1	NA	NA	NA	2456	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.020000	0.487562	
mm_110510.1	chr12	54695789	54695989	-	1	NA	NA	NA	5	NM_001331162	66266	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	0.095000	0.601990	
mm_47124.1	chr5	119807532	119807732	-	1	NA	NA	NA	-27031	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.040000	0.457711	
mm_36430.1	chr4	82294280	82294480	-	1	NA	NA	NA	211399	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.000000	0.393035	
mm_5724.1	chr1	44102341	44102541	-	1	NA	NA	NA	-53	NM_029368	75623	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0.150000	0.716418	
mm_24833.1	chr3	95658679	95658879	+	1	NA	NA	NA	58	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.105000	0.691542	
mm_43918.1	chr5	144768020	144768220	+	1	NA	NA	NA	-672	NM_001081362	100683	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0.115000	0.716418	
mm_103794.1	chr11	82871014	82871214	-	1	NA	NA	NA	96	NM_001007465	67338	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.115000	0.771144	
mm_158805.1	chrX	167264142	167264342	-	1	NA	NA	NA	87	NM_001313761	170744	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	0.005000	0.442786	
mm_166247.1	chr5	77261587	77261787	+	1	NA	NA	NA	-3807	NM_011263	19712	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.005000	0.378109	
mm_94090.1	chr10	128518434	128518634	-	1	NA	NA	NA	-6504	NR_105881	102465552		NR_105881	ENSMUSG00000099292	Mir6916	Gm27721|mmu-mir-6916	microRNA 6916	ncRNA	0.015000	0.417910	
mm_7971.1	chr1	134060835	134061035	-	1	NA	NA	NA	18220	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.035000	0.611940	
mm_103163.1	chr11	70455208	70455408	-	1	NA	NA	NA	3377	NM_025397	66172	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0.015000	0.507463	
mm_27992.1	chr3	82145774	82145974	-	1	NA	NA	NA	3	NM_021896	60596	Mm.143831	NM_021896	ENSMUSG00000033910	Gucy1a3	1200016O07Rik|sGC-alpha1	guanylate cyclase 1, soluble, alpha 3	protein-coding	0.030000	0.597015	
mm_42826.1	chr5	122100734	122100934	+	1	NA	NA	NA	-146	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.025000	0.572139	
mm_7924.1	chr1	133801084	133801284	-	1	NA	NA	NA	-47437	NM_213616	381290	Mm.188617	NM_213616	ENSMUSG00000026463	Atp2b4	Pmca4	ATPase, Ca++ transporting, plasma membrane 4	protein-coding	0.040000	0.562189	5(GCCTTAAGACCC,+,0.00)
mm_87617.1	chr10	57794459	57794659	+	1	NA	NA	NA	15	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.035000	0.502488	
mm_56576.1	chr6	106748846	106749046	-	1	NA	NA	NA	91	NM_008370	16192	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	0.010000	0.402985	
mm_152537.1	chr19	11327143	11327343	-	1	NA	NA	NA	7452	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.005000	0.437811	
mm_37240.1	chr4	118134707	118134907	-	1	NA	NA	NA	139	NM_001285520	20441	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.110000	0.741294	
mm_32896.1	chr4	118968063	118968263	+	1	NA	NA	NA	6196	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.040000	0.587065	
mm_159698.1	chr5	26105215	26105415	-	1	NA	NA	NA	-1	NM_207657	381622	Mm.226878	NM_207657	ENSMUSG00000051940	5031410I06Rik	-	RIKEN cDNA 5031410I06 gene	protein-coding	0.015000	0.502488	
mm_59957.1	chr7	30427332	30427532	+	1	NA	NA	NA	4128	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.045000	0.636816	
mm_5174.1	chr1	10233017	10233217	-	1	NA	NA	NA	-447	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.170000	0.810945	
mm_153982.1	chr19	47913784	47913984	-	1	NA	NA	NA	5415	NM_001001738	414801	Mm.29457	NM_001001738	ENSMUSG00000044948	Itprip	4833424O12Rik|DANGER|mKIAA1754	inositol 1,4,5-triphosphate receptor interacting protein	protein-coding	0.015000	0.447761	
mm_25296.1	chr3	105907464	105907664	+	1	NA	NA	NA	3143	NM_009631	11542	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0.035000	0.482587	
mm_143066.1	chr17	57021363	57021563	-	1	NA	NA	NA	10044	NM_010613	16549	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0.010000	0.353234	48(CTTTTTAAAAGG,+,0.00),48(CTTTTTAAAAGG,-,0.00)
mm_17393.1	chr2	27111926	27112126	-	1	NA	NA	NA	30451	NM_175427	109349	Mm.314080	NM_175427	ENSMUSG00000009216	Fam163b	C630035N08Rik	family with sequence similarity 163, member B	protein-coding	0.005000	0.527363	
mm_108781.1	chr12	89870616	89870816	+	1	NA	NA	NA	58233	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.000000	0.378109	22(GCCTATATATAC,-,0.00)
mm_50675.1	chr6	51544577	51544777	+	1	NA	NA	NA	154	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.005000	0.457711	
mm_47506.1	chr5	124035696	124035896	-	1	NA	NA	NA	-3536	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.025000	0.447761	-92(CCTTTAAAACAA,+,0.00)
mm_50386.1	chr6	48690964	48691164	+	1	NA	NA	NA	6486	NM_174990	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.020000	0.432836	
mm_117341.1	chr13	69594874	69595074	-	1	NA	NA	NA	16489	NM_175283	78925	Mm.451912	NM_175283	ENSMUSG00000021594	Srd5a1	0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1	steroid 5 alpha-reductase 1	protein-coding	0.005000	0.427861	
mm_99345.1	chr11	101552762	101552962	+	1	NA	NA	NA	208	NM_001252223	17966	Mm.784	NM_008676	ENSMUSG00000017119	Nbr1	mKIAA0049	neighbor of Brca1 gene 1	protein-coding	0.060000	0.582090	
mm_89190.1	chr10	86347244	86347444	+	1	NA	NA	NA	46932	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.010000	0.383085	
mm_68246.1	chr7	105482108	105482308	-	1	NA	NA	NA	-11	NM_028444	109042	Mm.3124	NM_028444	ENSMUSG00000037060	Prkcdbp	3110015B12Rik|6330514M23Rik|SRBC	protein kinase C, delta binding protein	protein-coding	0.070000	0.686567	
mm_90440.1	chr10	127643050	127643250	+	1	NA	NA	NA	164	NM_009284	20852	Mm.121721	NM_009284	ENSMUSG00000002147	Stat6	-	signal transducer and activator of transcription 6	protein-coding	0.060000	0.601990	-1(GTTTTTAGGGCC,+,0.00)
mm_169686.1	chr1	57377467	57377667	-	1	NA	NA	NA	-23	NR_037999	75323	Mm.362968	NR_037999	ENSMUSG00000097519	4930558J18Rik	-	RIKEN cDNA 4930558J18 gene	ncRNA	0.140000	0.736318	
mm_49732.1	chr6	34709523	34709723	+	1	NA	NA	NA	179	NM_145575	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.040000	0.621891	
mm_79854.1	chr9	64960729	64960929	+	1	NA	NA	NA	-3	NM_001077631	69882	Mm.272616	NM_175153	ENSMUSG00000034263	Vwa9	2010321M09Rik	von Willebrand factor A domain containing 9	protein-coding	0.090000	0.656716	
mm_63413.1	chr7	127448535	127448735	+	1	NA	NA	NA	523	NM_175163	71131	Mm.474533	NM_175163	ENSMUSG00000048921	Zfp689	4933416E05Rik|Znf689	zinc finger protein 689	protein-coding	0.070000	0.666667	
mm_61429.1	chr7	73740269	73740469	+	1	NA	NA	NA	62	NM_001162532	100038347	Mm.425464	NM_001162532	ENSMUSG00000078670	Fam174b	-	family with sequence similarity 174, member B	protein-coding	0.120000	0.746269	
mm_86850.1	chr10	21593066	21593266	+	1	NA	NA	NA	21	NR_027968	67692	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.070000	0.631841	
mm_163353.1	chr12	24830803	24831003	+	1	NA	NA	NA	-696	NM_026037	67216	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	0.080000	0.671642	
mm_170145.1	chr17	4403809	4404009	-	1	NA	NA	NA	-231071	NR_130984	75117	Mm.429393	NR_130984		4930517M08Rik	-	RIKEN cDNA 4930517M08 gene	ncRNA	0.020000	0.507463	-34(GAGTATATAAGA,-,0.00)
mm_70680.1	chr8	14994553	14994753	+	1	NA	NA	NA	-16372	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.020000	0.547264	
mm_48471.1	chr5	140936041	140936241	-	1	NA	NA	NA	64455	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.005000	0.512438	
mm_65134.1	chr7	19562044	19562244	-	1	NA	NA	NA	254	NM_199149	232947	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	0.165000	0.741294	
mm_42434.1	chr5	115429411	115429611	+	1	NA	NA	NA	-174	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.135000	0.810945	
mm_68294.1	chr7	105737157	105737357	-	1	NA	NA	NA	128	NM_133951	101867	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.065000	0.582090	
mm_119892.1	chr14	54937670	54937870	+	1	NA	NA	NA	1273	NM_029390	67272	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	0.005000	0.542289	
mm_97858.1	chr11	83116585	83116785	+	1	NA	NA	NA	-160	NM_011407	20555	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0.015000	0.507463	
mm_119933.1	chr14	54970130	54970330	+	1	NA	NA	NA	1443	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.010000	0.517413	
mm_138620.1	chr17	35829880	35830080	+	1	NA	NA	NA	6623	NM_008027	14251	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	0.070000	0.646766	
mm_82661.1	chr9	22108136	22108336	-	1	NA	NA	NA	5777	NR_106052	102466221		NR_106052	ENSMUSG00000098646	Mir7084	Gm27978|mmu-mir-7084	microRNA 7084	ncRNA	0.020000	0.636816	
mm_76691.1	chr8	94154045	94154245	-	1	NA	NA	NA	1538	NM_013603	17751	Mm.2064	NM_013603	ENSMUSG00000031760	Mt3	Mt-3	metallothionein 3	protein-coding	0.030000	0.616915	
mm_9864.1	chr1	184845746	184845946	-	1	NA	NA	NA	1	NM_133684	67247	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0.075000	0.681592	
mm_163404.1	chr12	75308455	75308655	+	1	NA	NA	NA	242	NM_023275	80837	Mm.27467	NM_023275	ENSMUSG00000046768	Rhoj	1110005O19Rik|AW210585|Arhj|TC10L|TCL	ras homolog family member J	protein-coding	0.020000	0.532338	
mm_114782.1	chr13	88824116	88824316	+	1	NA	NA	NA	2744	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.025000	0.333333	
mm_25404.1	chr3	107278781	107278981	+	1	NA	NA	NA	23	NM_026774	68576	Mm.290035	NM_026774	ENSMUSG00000087260	Lamtor5	1110003H18Rik|Hbxip|XIP	late endosomal/lysosomal adaptor, MAPK and MTOR activator 5	protein-coding	0.065000	0.547264	
mm_22633.1	chr3	14776129	14776329	+	1	NA	NA	NA	2231	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.020000	0.462687	
mm_172050.1	chr6	128760194	128760394	+	1	NA	NA	NA	28347	NM_008527	17059	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0.080000	0.512438	
mm_132268.1	chr16	32877790	32877990	+	1	NA	NA	NA	106	NM_001159349	69823	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	0.115000	0.656716	
mm_80606.1	chr9	86743527	86743727	+	1	NA	NA	NA	-6	NM_178738	244954	Mm.257629	NM_178738	ENSMUSG00000033491	Prss35	6030424L22Rik|P3D9	protease, serine 35	protein-coding	0.040000	0.641791	
mm_101676.1	chr11	39767734	39767934	-	1	NA	NA	NA	-377609	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA	0.000000	0.258706	
mm_15933.1	chr2	165594945	165595145	+	1	NA	NA	NA	17	NM_001271963	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	0.180000	0.840796	
mm_91653.1	chr10	42583487	42583687	-	1	NA	NA	NA	1	NM_152229	21907	Mm.287100	NM_152229	ENSMUSG00000019803	Nr2e1	Mtl1|Mtll|TLL|Tlx|XTLL|fierce|frc|tailless	nuclear receptor subfamily 2, group E, member 1	protein-coding	0.075000	0.626866	
mm_26098.1	chr3	136935431	136935631	+	1	NA	NA	NA	265465	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.015000	0.353234	-83(GCCTTTAAAAAA,-,0.00)
mm_10636.1	chr2	20355664	20355864	+	1	NA	NA	NA	65851	NM_001081006	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.000000	0.452736	
mm_1008.1	chr1	58726001	58726201	+	1	NA	NA	NA	-4451	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.015000	0.422886	
mm_162990.1	chr11	23961508	23961708	+	1	NA	NA	NA	-66338	NM_172555	216578	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0.010000	0.442786	
mm_20875.1	chr2	148701111	148701311	-	1	NA	NA	NA	20091	NM_028986	74533	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0.000000	0.492537	
mm_113860.1	chr13	48031748	48031948	+	1	NA	NA	NA	-13240	NR_038004	70971	Mm.158514	NR_038004	ENSMUSG00000047324	4931429P17Rik	-	RIKEN cDNA 4931429P17 gene	ncRNA	0.030000	0.552239	
mm_18060.1	chr2	39421034	39421234	-	1	NA	NA	NA	-194796	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding	0.060000	0.701493	
mm_147089.1	chr18	35648323	35648523	-	1	NA	NA	NA	944	NM_027222	69816	Mm.27252	NM_027222	ENSMUSG00000024353	Mzb1	2010001M09Rik|AV064572|PACAP|pERp1	marginal zone B and B1 cell-specific protein 1	protein-coding	0.015000	0.587065	
mm_108610.1	chr12	85476391	85476591	+	1	NA	NA	NA	2590	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.055000	0.606965	
mm_79451.1	chr9	56119547	56119747	+	1	NA	NA	NA	29671	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.005000	0.507463	
mm_42239.1	chr5	113819323	113819523	+	1	NA	NA	NA	11078	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.035000	0.547264	
mm_17457.1	chr2	28556652	28556852	-	1	NA	NA	NA	6651	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.020000	0.557214	
mm_49556.1	chr6	30544892	30545092	+	1	NA	NA	NA	3350	NM_001024698	232680	Mm.268855	NM_001024698	ENSMUSG00000071553	Cpa2	-	carboxypeptidase A2, pancreatic	protein-coding	0.020000	0.522388	
mm_151034.1	chr19	47015226	47015426	+	1	NA	NA	NA	-137	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.150000	0.751244	
mm_66822.1	chr7	48657993	48658193	-	1	NA	NA	NA	-14292	NM_207537	404238	Mm.377926	NM_207537	ENSMUSG00000070546	Mrgprb3	MrgB3	MAS-related GPR, member B3	protein-coding	0.000000	0.457711	
mm_104870.1	chr11	99405738	99405938	-	1	NA	NA	NA	16421	NM_010661	268482	Mm.436651	NM_010661	ENSMUSG00000020912	Krt12	AI835216|K12|Krt-12|Krt1-12	keratin 12	protein-coding	0.015000	0.497512	
mm_70174.1	chr7	143649501	143649701	-	1	NA	NA	NA	63	NM_001311145	79202	Mm.261384	NM_023680	ENSMUSG00000010751	Tnfrsf22	2810028K06Rik|C130035G06Rik|SOBa|Tnfrh2|Tnfrsf1al2|mDcTrailr2	tumor necrosis factor receptor superfamily, member 22	protein-coding	0.040000	0.626866	
mm_25167.1	chr3	103071097	103071297	+	1	NA	NA	NA	-2817	NM_001033303	229665	Mm.331272	NM_001033303	ENSMUSG00000070385	Ampd1	AI553520|Ampd-1	adenosine monophosphate deaminase 1	protein-coding	0.030000	0.457711	
mm_62429.1	chr7	101361169	101361369	+	1	NA	NA	NA	13200	NM_001040111	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.015000	0.592040	
mm_131743.1	chr16	22095907	22096107	+	1	NA	NA	NA	67292	NM_183029	319765	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.000000	0.462687	
mm_65412.1	chr7	25245092	25245292	-	1	NA	NA	NA	5566	NM_010155	13875	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.040000	0.686567	
mm_65255.1	chr7	19880206	19880406	-	1	NA	NA	NA	7659	NM_177036	319930	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.015000	0.492537	-98(ACTTTTAAGGAC,+,0.00)
mm_79849.1	chr9	64821968	64822168	+	1	NA	NA	NA	11057	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.005000	0.308458	
mm_167509.1	chr9	13323944	13324144	+	1	NA	NA	NA	77088	NM_025534	66396	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.000000	0.452736	
mm_97732.1	chr11	80395442	80395642	+	1	NA	NA	NA	12263	NM_001130171	22680	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0.025000	0.477612	65(GTTTATATAGAC,+,0.00)
mm_16543.1	chr2	181689027	181689227	+	1	NA	NA	NA	2690	NM_001291205	56470	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0.020000	0.567164	
mm_137022.1	chr17	17866959	17867159	+	1	NA	NA	NA	-11871	NM_008215	15116	Mm.255701	NM_008215	ENSMUSG00000003665	Has1	HAS	hyaluronan synthase1	protein-coding	0.020000	0.452736	
mm_112372.1	chr12	119197603	119197803	-	1	NA	NA	NA	40573	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.005000	0.402985	-37(GTGTCTTAAAGC,-,0.00)
mm_53770.1	chr6	145934025	145934225	+	1	NA	NA	NA	-22	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.045000	0.696517	
mm_51462.1	chr6	82070641	82070841	+	1	NA	NA	NA	29113	NM_145570	232146	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	0.020000	0.537313	
mm_122158.1	chr14	31374501	31374701	-	1	NA	NA	NA	37877	NM_009796	12339	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.000000	0.472637	
mm_599.1	chr1	39650633	39650833	+	1	NA	NA	NA	449	NM_170597	263764	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0.100000	0.686567	
mm_136390.1	chr16	93142057	93142257	-	1	NA	NA	NA	211032	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.025000	0.537313	
mm_137947.1	chr17	32877948	32878148	+	1	NA	NA	NA	13555	NM_207245	240066	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0.020000	0.507463	
mm_38610.1	chr4	141874816	141875016	-	1	NA	NA	NA	4	NM_025994	27984	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	0.115000	0.761194	
mm_47248.1	chr5	121572615	121572815	-	1	NA	NA	NA	21109	NM_009656	11669	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.060000	0.626866	
mm_92950.1	chr10	85184576	85184776	-	1	NA	NA	NA	378	NM_007771	12952	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0.125000	0.726368	
mm_22352.1	chr2	180920919	180921119	-	1	NA	NA	NA	-83	NM_173761	228994	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	0.160000	0.751244	
mm_46294.1	chr5	100416099	100416299	-	1	NA	NA	NA	35	NM_026969	69162	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	0.140000	0.771144	
mm_91110.1	chr10	19185767	19185967	-	1	NA	NA	NA	18629	NR_038022	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.025000	0.482587	
mm_126258.1	chr15	79085485	79085685	+	1	NA	NA	NA	10362	NM_145139	223691	Mm.206404	NM_145139	ENSMUSG00000033047	Eif3l	0610011H21Rik|D15N1e|Eif3eip|Eif3ip|Eif3s6ip|HSP-66Y|PAF67	eukaryotic translation initiation factor 3, subunit L	protein-coding	0.035000	0.567164	
mm_67066.1	chr7	67736436	67736636	-	1	NA	NA	NA	23206	NM_183312	233335	Mm.60526	NM_183312	ENSMUSG00000030554	Synm	4930412K21Rik|AI852401|Dmn|E130104F11|Syn|Synemin	synemin, intermediate filament protein	protein-coding	0.050000	0.547264	
mm_168165.1	chr10	51490865	51491065	+	1	NA	NA	NA	67	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.010000	0.457711	
mm_136576.1	chr17	3482150	3482350	+	1	NA	NA	NA	-65	NM_001286758	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.010000	0.502488	
mm_34672.1	chr4	150927927	150928127	+	1	NA	NA	NA	28	NM_001077509	21942	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.025000	0.582090	
mm_138863.1	chr17	43016414	43016614	+	1	NA	NA	NA	-41	NM_178589	94185	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0.080000	0.646766	
mm_65837.1	chr7	29232361	29232561	-	1	NA	NA	NA	61	NM_001033525	52150	Mm.24877	NM_001033525	ENSMUSG00000046410	Kcnk6	D7Ertd764e|Toss|Twik2	potassium inwardly-rectifying channel, subfamily K, member 6	protein-coding	0.135000	0.761194	
mm_73810.1	chr8	117342572	117342772	+	1	NA	NA	NA	-6498	NM_028941	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.020000	0.552239	
mm_169431.1	chr14	53763007	53763207	+	1	NA	NA	NA	490822	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.457711	
mm_147227.1	chr18	38209556	38209756	-	1	NA	NA	NA	106	NM_029357	75599	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.040000	0.601990	
mm_12232.1	chr2	68568481	68568681	+	1	NA	NA	NA	-13832	NM_177651	227998	Mm.67562	NM_177651	ENSMUSG00000053896	4933409G03Rik	-	RIKEN cDNA 4933409G03 gene	protein-coding	0.045000	0.567164	
mm_31049.1	chr4	41135932	41136132	+	1	NA	NA	NA	11	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.115000	0.761194	
mm_123754.1	chr14	70195931	70196131	-	1	NA	NA	NA	-3785	NM_001271409	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.005000	0.587065	
mm_149466.1	chr19	11536708	11536908	+	1	NA	NA	NA	-41	NM_025658	66607	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	0.035000	0.611940	
mm_134308.1	chr16	15863131	15863331	-	1	NA	NA	NA	91	NM_029354	72083	Mm.22351	NM_029354	ENSMUSG00000022671	Mzt2	2410018G20Rik|2610001E06Rik|Fam128|Fam128b	mitotic spindle organizing protein 2	protein-coding	0.050000	0.477612	-33(CCGTTTAAAAGC,-,0.00)
mm_156713.1	chrX	159627453	159627653	+	1	NA	NA	NA	281	NM_001135727	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.125000	0.731343	
mm_32217.1	chr4	101647652	101647852	+	1	NA	NA	NA	-31	NM_175036	230514	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0.090000	0.661692	
mm_148144.1	chr18	77047198	77047398	-	1	NA	NA	NA	-2	NM_027721	71206	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	0.055000	0.557214	
mm_9509.1	chr1	173738807	173739007	-	1	NA	NA	NA	2902	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.000000	0.248756	-19(CTATATTTAAGG,-,0.00)
mm_149844.1	chr19	25044492	25044692	+	1	NA	NA	NA	45063	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.010000	0.442786	
mm_30810.1	chr4	20042038	20042238	+	1	NA	NA	NA	86	NM_010281	14590	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0.125000	0.681592	
mm_139072.1	chr17	46650482	46650682	+	1	NA	NA	NA	244	NM_025611	66515	Mm.329078	NM_025611	ENSMUSG00000038545	Cul7	2510004L20Rik|AA409809|C230011P08Rik|p185|p193	cullin 7	protein-coding	0.090000	0.716418	
mm_165308.1	chr2	101797551	101797751	-	1	NA	NA	NA	56	NM_175181	72446	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0.075000	0.641791	
mm_104493.1	chr11	95835249	95835449	-	1	NA	NA	NA	-6946	NM_023121	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.015000	0.512438	
mm_64107.1	chr7	141051561	141051761	+	1	NA	NA	NA	-9613	NM_177897	330671	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.030000	0.537313	
mm_170729.1	chr2	15125237	15125437	+	1	NA	NA	NA	69975	NM_029466	75869	Mm.174068	NM_029466	ENSMUSG00000017418	Arl5b	4930587A11Rik|AW146430|Arl8	ADP-ribosylation factor-like 5B	protein-coding	0.005000	0.492537	-32(GCTTTTAGACCC,+,0.00)
mm_21919.1	chr2	166825015	166825215	-	1	NA	NA	NA	19534	NM_001085495	99371	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.010000	0.507463	
mm_5986.1	chr1	58423953	58424153	-	1	NA	NA	NA	35	NR_027853	12747	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	0.090000	0.582090	
mm_56996.1	chr6	120971524	120971724	-	1	NA	NA	NA	12780	NR_138099	215458	Mm.122399	NR_138099		LOC215458	-	uncharacterized LOC215458	ncRNA	0.025000	0.542289	
mm_164380.1	chr16	31234295	31234495	+	1	NA	NA	NA	-33157	NM_030138	78618	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.025000	0.407960	
mm_62469.1	chr7	101765393	101765593	+	1	NA	NA	NA	-52820	NM_008887	11859	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	0.010000	0.437811	
mm_166956.1	chr7	44477278	44477478	+	1	NA	NA	NA	7031	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.447761	
mm_114015.1	chr13	52610844	52611044	+	1	NA	NA	NA	14062	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.035000	0.567164	
mm_9396.1	chr1	172219754	172219954	-	1	NA	NA	NA	41	NM_009813	12372	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.025000	0.621891	
mm_114390.1	chr13	63272498	63272698	+	1	NA	NA	NA	24549	NR_045794	100504114	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	0.025000	0.492537	
mm_4604.1	chr1	178448511	178448711	+	1	NA	NA	NA	42730	NM_026626	68226	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.015000	0.472637	
mm_91236.1	chr10	22302740	22302940	-	1	NA	NA	NA	-3880	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.005000	0.407960	
mm_23974.1	chr3	85914504	85914704	+	1	NA	NA	NA	-27086	NM_177130	320302	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding	0.005000	0.363184	
mm_165823.1	chr3	149423673	149423873	+	1	NA	NA	NA	149036	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.015000	0.457711	
mm_36754.1	chr4	101265123	101265323	-	1	NA	NA	NA	59	NM_146145	16451	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.150000	0.731343	-32(GTTTTTAGAGCG,+,0.00)
mm_54464.1	chr6	34903266	34903466	-	1	NA	NA	NA	7465	NM_001013366	101240	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.020000	0.442786	-6(TTTTTTAAACAC,+,0.00)
mm_131040.1	chr16	3884598	3884798	+	1	NA	NA	NA	79	NM_001290689	74763	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|Nat15	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0.120000	0.721393	
mm_21691.1	chr2	164443980	164444180	-	1	NA	NA	NA	-892	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.015000	0.462687	-35(TTTTTTAAAGAC,+,0.00)
mm_69363.1	chr7	130547163	130547363	-	1	NA	NA	NA	118	NM_001162855	67872	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0.160000	0.756219	
mm_105892.1	chr11	114934264	114934464	-	1	NA	NA	NA	22	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.020000	0.497512	-40(CGCTATAAAAGG,-,0.00)
mm_154803.1	chrX	13297495	13297695	+	1	NA	NA	NA	16573	NM_010028	13205	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	0.010000	0.497512	-34(CCCTTTATAAGC,+,0.00),-34(CCCTTTATAAGC,-,0.00),-32(CTTTATAAGCTC,+,0.00)
mm_135384.1	chr16	44140439	44140639	-	1	NA	NA	NA	730	NM_028108	72117	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	0.070000	0.592040	
mm_145557.1	chr18	60812073	60812273	+	1	NA	NA	NA	97	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.010000	0.597015	
mm_34093.1	chr4	138834829	138835029	+	1	NA	NA	NA	3053	NM_001082531	18780	Mm.4675	NM_011108	ENSMUSG00000058908	Pla2g2a	EF|Mom1|Pla2|sPLA2|sPla2-IIA	phospholipase A2, group IIA (platelets, synovial fluid)	protein-coding	0.020000	0.537313	
mm_125454.1	chr15	52039860	52040060	+	1	NA	NA	NA	-147	NM_175503	239435	Mm.24204	NM_175503	ENSMUSG00000068522	Aard	A5D3|AV328152	alanine and arginine rich domain containing protein	protein-coding	0.030000	0.492537	
mm_870.1	chr1	52152255	52152455	+	1	NA	NA	NA	32733	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.050000	0.582090	
mm_130970.1	chr15	103323338	103323538	-	1	NA	NA	NA	-13000	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.105000	0.805970	
mm_81987.1	chr9	121415857	121416057	+	1	NA	NA	NA	48999	NM_175114	67095	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.030000	0.656716	
mm_112070.1	chr12	112511019	112511219	-	1	NA	NA	NA	41	NM_178915	104885	Mm.37751	NM_178915	ENSMUSG00000054013	Tmem179	AI839735	transmembrane protein 179	protein-coding	0.160000	0.726368	
mm_119607.1	chr14	51096319	51096519	+	1	NA	NA	NA	419	NM_201239	58809	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	0.020000	0.522388	
mm_30804.1	chr4	20028616	20028816	+	1	NA	NA	NA	-13336	NM_010281	14590	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0.000000	0.323383	26(CCTTTTAAATTA,+,0.00)
mm_40780.1	chr5	67306859	67307059	+	1	NA	NA	NA	4	NM_001310629	109108	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	0.130000	0.731343	
mm_15864.1	chr2	164832865	164833065	+	1	NA	NA	NA	93	NM_001038492	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.070000	0.611940	
mm_79378.1	chr9	54764470	54764670	+	1	NA	NA	NA	-178	NM_001284507	12903	Mm.34797	NM_013496	ENSMUSG00000032291	Crabp1	AI326249|CRABP-I|Crabp-1|CrabpI|Rbp-5	cellular retinoic acid binding protein I	protein-coding	0.025000	0.557214	
mm_106786.1	chr12	4769058	4769258	+	1	NA	NA	NA	109	NM_175431	207921	Mm.184898	NM_175431	ENSMUSG00000050545	Fam228b	A830093I24Rik	family with sequence similarity 228, member B	protein-coding	0.135000	0.686567	
mm_8182.1	chr1	138080785	138080985	-	1	NA	NA	NA	94241	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.497512	
mm_14553.1	chr2	133552128	133552328	+	1	NA	NA	NA	69	NM_007553	12156	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.170000	0.781095	-35(CTCCTTTAAAAG,-,0.00),-34(TCCTTTAAAAGC,-,0.00),-33(CCTTTAAAAGCC,+,0.00)
mm_41965.1	chr5	107055088	107055288	+	1	NA	NA	NA	90627	NM_001271566	12545	Mm.20842	NM_009863	ENSMUSG00000029283	Cdc7	AI597260|Cdc7l1|muCdc7	cell division cycle 7 (S. cerevisiae)	protein-coding	0.020000	0.522388	
mm_104233.1	chr11	88689835	88690035	-	1	NA	NA	NA	28294	NM_054043	76626	Mm.400451	NM_054043	ENSMUSG00000069769	Msi2	1700105C15Rik|AI451722|AI563628|AW489193|Msi2h	musashi RNA-binding protein 2	protein-coding	0.015000	0.567164	
mm_156914.1	chrX	169082527	169082727	+	1	NA	NA	NA	-30251	NM_001287530	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.000000	0.437811	
mm_158648.1	chrX	155504843	155505043	-	1	NA	NA	NA	118384	NM_001093750	211612	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	0.020000	0.398010	
mm_155317.1	chrX	62222415	62222615	+	1	NA	NA	NA	-60984	NM_001199997	74437	Mm.85792	NM_001199996	ENSMUSG00000045330	4933402E13Rik	-	RIKEN cDNA 4933402E13 gene	protein-coding	0.015000	0.333333	-31(GCTTAAATAGGG,+,0.00)
mm_11934.1	chr2	52619641	52619841	+	1	NA	NA	NA	56118	NM_001285428	12298	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.065000	0.616915	
mm_75078.1	chr8	33886651	33886851	-	1	NA	NA	NA	43112	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.005000	0.373134	
mm_121690.1	chr14	13961093	13961293	-	1	NA	NA	NA	120	NM_001285780	66231	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.145000	0.761194	
mm_115126.1	chr13	104287359	104287559	+	1	NA	NA	NA	-376	NR_136938	108154	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.015000	0.368159	23(TCTTTAAAACTC,+,0.00)
mm_110641.1	chr12	58268773	58268973	-	1	NA	NA	NA	385	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	0.030000	0.601990	
mm_154943.1	chrX	36195855	36196055	+	1	NA	NA	NA	51	NM_028325	72693	Mm.297698	NM_028325	ENSMUSG00000036699	Zcchc12	2810028A01Rik|AV136720|Sizn1	zinc finger, CCHC domain containing 12	protein-coding	0.050000	0.562189	
mm_127109.1	chr15	97869565	97869765	+	1	NA	NA	NA	-25163	NM_001204278	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.040000	0.592040	
mm_65721.1	chr7	28379155	28379355	-	1	NA	NA	NA	-27	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.085000	0.641791	-33(CCCCATAAAAGG,-,0.00)
mm_65889.1	chr7	29953785	29953985	-	1	NA	NA	NA	-1992	NM_178384	72723	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77	zinc finger protein 74	protein-coding	0.100000	0.716418	
mm_15854.1	chr2	164777854	164778054	+	1	NA	NA	NA	1780	NM_009394	21925	Mm.1716	NM_009394	ENSMUSG00000017300	Tnnc2	Tncs	troponin C2, fast	protein-coding	0.035000	0.606965	
mm_167490.1	chr9	6953176	6953376	+	1	NA	NA	NA	223770	NM_029851	110350	Mm.237596	NM_029851	ENSMUSG00000047193	Dync2h1	4432416O06Rik|AI448217|D030010H02Rik|D330044F14Rik|DHC1b|DHC2|Dnchc2|b2b414Clo|mKIAA1997	dynein cytoplasmic 2 heavy chain 1	protein-coding	0.010000	0.447761	-89(AACCCTAAAAGC,-,0.00)
mm_93573.1	chr10	116581421	116581621	-	1	NA	NA	NA	-10	NM_001037846	72068	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.120000	0.641791	
mm_92543.1	chr10	79711441	79711641	-	1	NA	NA	NA	-5093	NM_008226	15166	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	0.020000	0.597015	
mm_76930.1	chr8	105936934	105937134	-	1	NA	NA	NA	1358	NM_013640	19171	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0.040000	0.592040	
mm_1419.1	chr1	67165369	67165569	+	1	NA	NA	NA	42442	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.025000	0.507463	
mm_68812.1	chr7	125605722	125605922	-	1	NA	NA	NA	2393	NM_021887	60504	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.000000	0.582090	
mm_66218.1	chr7	34389610	34389810	-	1	NA	NA	NA	-170	NM_025948	67070	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral	LSM14A mRNA processing body assembly factor	protein-coding	0.175000	0.786070	
mm_109315.1	chr12	109561107	109561307	+	1	NA	NA	NA	-2485	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.020000	0.492537	
mm_417.1	chr1	34238000	34238200	+	1	NA	NA	NA	77770	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.030000	0.502488	
mm_153116.1	chr19	33177081	33177281	-	1	NA	NA	NA	215114	NM_001167818	67795	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	0.010000	0.482587	
mm_60106.1	chr7	35416256	35416456	+	1	NA	NA	NA	19263	NM_028120	72140	Mm.133263	NM_028120	ENSMUSG00000023072	Cep89	2610507L03Rik|Ccdc123	centrosomal protein 89	protein-coding	0.015000	0.552239	
mm_32976.1	chr4	120097824	120098024	+	1	NA	NA	NA	-63282	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.010000	0.592040	
mm_99455.1	chr11	102434358	102434558	+	1	NA	NA	NA	4136	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.010000	0.512438	78(GCCCATATATAG,-,0.00),80(CCATATATAGTC,+,0.00)
mm_96469.1	chr11	67646501	67646701	+	1	NA	NA	NA	-48725	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.015000	0.477612	
mm_96958.1	chr11	70639047	70639247	+	1	NA	NA	NA	25	NM_010326	14723	Mm.377085	NM_010326	ENSMUSG00000050675	Gp1ba	GPIba|GPIbalpha	glycoprotein 1b, alpha polypeptide	protein-coding	0.005000	0.532338	
mm_55210.1	chr6	52218601	52218801	-	1	NA	NA	NA	-128	NM_010455	15404	Mm.294826	NM_010455	ENSMUSG00000038236	Hoxa7	AV118143|Hox-1.1|M6	homeobox A7	protein-coding	0.025000	0.567164	
mm_38270.1	chr4	136880690	136880890	-	1	NA	NA	NA	5387	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.035000	0.611940	
mm_82507.1	chr9	20481638	20481838	-	1	NA	NA	NA	11008	NM_146221	235028	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	0.010000	0.412935	
mm_59861.1	chr7	30095071	30095271	+	1	NA	NA	NA	95	NM_011981	26466	Mm.195092	NM_011981	ENSMUSG00000049421	Zfp260	AI480997|Ozrf1|PEX1|Zfp63|Znf260	zinc finger protein 260	protein-coding	0.045000	0.547264	
mm_49034.1	chr6	4759781	4759981	+	1	NA	NA	NA	12575	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.388060	69(CCTTTAAGGCCG,+,0.00)
mm_72769.1	chr8	85730719	85730919	+	1	NA	NA	NA	29914	NR_106189	102465898		NR_106189	ENSMUSG00000098388	Mir8109	Gm27495|mmu-mir-8109	microRNA 8109	ncRNA	0.005000	0.427861	-2(GTGTATTAAAGA,-,0.00)
mm_28806.1	chr3	96245120	96245320	-	1	NA	NA	NA	-237	NM_178212	319192	Mm.5220	NM_178212	ENSMUSG00000063954	Hist2h2aa2	H2a-614|H2a-615	histone cluster 2, H2aa2	protein-coding	0.065000	0.611940	
mm_127700.1	chr15	102990838	102991038	+	1	NA	NA	NA	399	NM_010466	15426	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.100000	0.661692	
mm_120475.1	chr14	65974851	65975051	+	1	NA	NA	NA	6468	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.025000	0.567164	
mm_17887.1	chr2	34963648	34963848	-	1	NA	NA	NA	-1976	NM_001326601	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.015000	0.487562	-35(CTCCATATAAAC,-,0.00),-33(CCATATAAACTG,+,0.00)
mm_100479.1	chr11	120229987	120230187	+	1	NA	NA	NA	-2860	NM_001347621	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.070000	0.636816	
mm_135970.1	chr16	74961041	74961241	-	1	NA	NA	NA	-550229	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.005000	0.368159	
mm_36306.1	chr4	68954334	68954534	-	1	NA	NA	NA	-37	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.080000	0.676617	
mm_33789.1	chr4	134923889	134924089	+	1	NA	NA	NA	364	NM_023665	27981	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.135000	0.671642	
mm_86265.1	chr9	121705209	121705409	-	1	NA	NA	NA	-280	NM_178677	215474	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.060000	0.646766	
mm_43625.1	chr5	138171909	138172109	+	1	NA	NA	NA	-12	NM_021392	11781	Mm.113205	NM_021392	ENSMUSG00000019518	Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding	0.050000	0.537313	
mm_53114.1	chr6	125096079	125096279	+	1	NA	NA	NA	16	NM_145979	107932	Mm.333388	NM_145979	ENSMUSG00000063870	Chd4	9530019N15Rik|AA617397|BC005710|D6Ertd380e|Mi-2beta|mKIAA4075	chromodomain helicase DNA binding protein 4	protein-coding	0.115000	0.701493	-36(GGCCCTTTAAGA,-,0.00),-35(GCCCTTTAAGAG,-,0.00),-34(CCCTTTAAGAGG,-,0.00),-33(CCTTTAAGAGGC,+,0.00)
mm_98591.1	chr11	95777933	95778133	+	1	NA	NA	NA	28966	NM_201609	268469	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	0.035000	0.562189	
mm_101346.1	chr11	23633530	23633730	-	1	NA	NA	NA	1	NM_001347242	71675	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	0.155000	0.766169	
mm_133397.1	chr16	84783621	84783821	+	1	NA	NA	NA	9598	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.005000	0.333333	
mm_127942.1	chr15	10713461	10713661	-	1	NA	NA	NA	-21	NM_030690	75646	Mm.212395	NM_030690	ENSMUSG00000022246	Rai14	1700008J19Rik|1700020L11Rik|Ankycorbin|Norpeg|mKIAA1334	retinoic acid induced 14	protein-coding	0.015000	0.487562	
mm_56831.1	chr6	117174478	117174678	-	1	NA	NA	NA	6043	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.010000	0.363184	
mm_67787.1	chr7	97578666	97578866	-	1	NA	NA	NA	731	NM_001177945	66273	Mm.41583	NM_183251	ENSMUSG00000035642	Aamdc	1810020D17Rik|1810037D19Rik|LI2	adipogenesis associated Mth938 domain containing	protein-coding	0.005000	0.462687	
mm_116727.1	chr13	51714731	51714931	-	1	NA	NA	NA	63123	NM_029279	75420	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.020000	0.487562	
mm_2782.1	chr1	130841453	130841653	+	1	NA	NA	NA	14869	NM_011082	18703	Mm.276414	NM_011082	ENSMUSG00000026417	Pigr	-	polymeric immunoglobulin receptor	protein-coding	0.035000	0.527363	
mm_134286.1	chr16	14215743	14215943	-	1	NA	NA	NA	52568	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.010000	0.537313	
mm_87487.1	chr10	51494531	51494731	+	1	NA	NA	NA	3733	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.010000	0.482587	
mm_145296.1	chr18	53275732	53275932	+	1	NA	NA	NA	30170	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.005000	0.472637	
mm_126798.1	chr15	86704067	86704267	+	1	NA	NA	NA	489708	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.020000	0.547264	
mm_16664.1	chr2	6721543	6721743	-	1	NA	NA	NA	19	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.025000	0.522388	
mm_126858.1	chr15	89286451	89286651	+	1	NA	NA	NA	19181	NR_105924	102465981		NR_105924	ENSMUSG00000098442	Mir6959	Gm27807|mmu-mir-6959	microRNA 6959	ncRNA	0.010000	0.432836	
mm_33401.1	chr4	129821455	129821655	+	1	NA	NA	NA	847	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.025000	0.417910	
mm_64363.1	chr7	142399557	142399757	+	1	NA	NA	NA	-11787	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.005000	0.537313	
mm_148939.1	chr19	7056652	7056852	+	1	NA	NA	NA	-16	NM_134147	107227	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0.110000	0.656716	
mm_119172.1	chr14	32159243	32159443	+	1	NA	NA	NA	-544	NM_001033988	27057	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.010000	0.512438	
mm_114822.1	chr13	91750119	91750319	+	1	NA	NA	NA	-8347	NR_028313	373852	Mm.466817	NR_015501	ENSMUSG00000074782	4833422C13Rik	-	RIKEN cDNA 4833422C13 gene	ncRNA	0.015000	0.462687	
mm_142117.1	chr17	35865606	35865806	-	1	NA	NA	NA	111	NM_001146711	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.045000	0.611940	
mm_109871.1	chr12	4916081	4916281	-	1	NA	NA	NA	-1172	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.005000	0.388060	
mm_100683.1	chr11	3502552	3502752	-	1	NA	NA	NA	2169	NM_172439	170835	Mm.24313	NM_172439	ENSMUSG00000034570	Inpp5j	Pib5pa|Pipp	inositol polyphosphate 5-phosphatase J	protein-coding	0.020000	0.606965	
mm_62580.1	chr7	105374935	105375135	+	1	NA	NA	NA	-3	NM_001195727	100503879	Mm.380109	NM_001195727	ENSMUSG00000078611	Gm5901	EG545989	predicted gene 5901	protein-coding	0.005000	0.562189	
mm_25735.1	chr3	122860170	122860370	+	1	NA	NA	NA	-34802	NM_007980	14079	Mm.28398	NM_007980	ENSMUSG00000023057	Fabp2	Fabpi|I-FABP	fatty acid binding protein 2, intestinal	protein-coding	0.015000	0.442786	
mm_170742.1	chr2	154892693	154892893	-	1	NA	NA	NA	113	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.095000	0.621891	
mm_90719.1	chr10	4432194	4432394	-	1	NA	NA	NA	58	NM_025343	66084	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	0.115000	0.721393	
mm_73764.1	chr8	115707525	115707725	+	1	NA	NA	NA	-731	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.015000	0.452736	70(TTTTTTAAAGCA,+,0.00)
mm_150122.1	chr19	29958970	29959170	+	1	NA	NA	NA	13280	NM_001164724	77125	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	0.020000	0.398010	
mm_94978.1	chr11	31733223	31733423	+	1	NA	NA	NA	-61461	NM_001024919	69556	Mm.34183	NM_001024919	ENSMUSG00000044502	Bod1	2310022M17Rik|BOD2.1|Fam44b	biorientation of chromosomes in cell division 1	protein-coding	0.000000	0.587065	
mm_93594.1	chr10	117087029	117087229	-	1	NA	NA	NA	-23315	NM_007636	12461	Mm.247788	NM_007636	ENSMUSG00000034024	Cct2	Cctb	chaperonin containing Tcp1, subunit 2 (beta)	protein-coding	0.005000	0.348259	
mm_113878.1	chr13	48968240	48968440	+	1	NA	NA	NA	228	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.165000	0.805970	
mm_92712.1	chr10	80796266	80796466	-	1	NA	NA	NA	2260	NM_023900	78670	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.010000	0.502488	
mm_129880.1	chr15	83464449	83464649	-	1	NA	NA	NA	57	NM_001159509	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.145000	0.771144	
mm_172880.1	chr9	48303528	48303728	-	1	NA	NA	NA	37270	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.015000	0.507463	-39(CCCTTTATAAGC,+,0.00),-39(CCCTTTATAAGC,-,0.00)
mm_145089.1	chr18	42524131	42524331	+	1	NA	NA	NA	12744	NR_110344	56070	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	0.025000	0.621891	
mm_149971.1	chr19	29048103	29048303	+	1	NA	NA	NA	-301	NM_021299	56248	Mm.196067	NM_021299	ENSMUSG00000024782	Ak3	AA407498|AI506714|AK-3|Ak3l|Ak3l1|Akl3l	adenylate kinase 3	protein-coding	0.025000	0.542289	
mm_65427.1	chr7	25297642	25297842	-	1	NA	NA	NA	213	NM_008776	18476	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	0.075000	0.691542	
mm_101819.1	chr11	46451254	46451454	-	1	NA	NA	NA	-3577	NM_134250	171285	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0.045000	0.492537	
mm_25865.1	chr3	129878701	129878901	+	1	NA	NA	NA	195	NR_104611	66350	Mm.151951	NM_023196	ENSMUSG00000027999	Pla2g12a	2310004B05Rik|GXII|GXII-1|GXII-1-PLA2|Pla2g12|Rossy|mGXII-1	phospholipase A2, group XIIA	protein-coding	0.110000	0.721393	
mm_40217.1	chr5	37091403	37091603	+	1	NA	NA	NA	6267	NM_001347348	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0.100000	0.661692	
mm_140146.1	chr17	80062399	80062599	+	1	NA	NA	NA	-231	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.115000	0.656716	
mm_35403.1	chr4	34687361	34687561	-	1	NA	NA	NA	-23	NM_011895	24060	Mm.281885	NM_011895	ENSMUSG00000028293	Slc35a1	AA408150|AI314851	solute carrier family 35 (CMP-sialic acid transporter), member 1	protein-coding	0.105000	0.636816	
mm_95375.1	chr11	49089494	49089694	+	1	NA	NA	NA	2577	NM_008330	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.010000	0.402985	-52(CCTTTTATGTGA,+,0.00)
mm_39115.1	chr4	154936489	154936689	-	1	NA	NA	NA	-8512	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.010000	0.427861	42(TGCTTTTAATGC,-,0.00)
mm_76778.1	chr8	96403786	96403986	-	1	NA	NA	NA	142087	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.010000	0.482587	
mm_163151.1	chr11	83437627	83437827	+	1	NA	NA	NA	33	NM_025492	66330	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	0.000000	0.532338	39(GGCTAGAAAGGG,-,0.00)
mm_144950.1	chr18	37807982	37808182	+	1	NA	NA	NA	1672	NM_033581	93706	Mm.247203	NM_033581	ENSMUSG00000102918	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding	0.050000	0.517413	
mm_172357.1	chr7	116084518	116084718	-	1	NA	NA	NA	8531	NR_029433	69350	Mm.440425	NR_029433	ENSMUSG00000087621	1700003G18Rik	2610312K03Rik	RIKEN cDNA 1700003G18 gene	ncRNA	0.040000	0.467662	
mm_143484.1	chr17	71270233	71270433	-	1	NA	NA	NA	40632	NM_145158	246707	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.025000	0.462687	
mm_13699.1	chr2	117123440	117123640	+	1	NA	NA	NA	2469	NM_033524	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.010000	0.283582	
mm_63880.1	chr7	137316802	137317002	+	1	NA	NA	NA	-2457	NM_010096	13593	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.030000	0.537313	
mm_95996.1	chr11	59208288	59208488	+	1	NA	NA	NA	27	NM_024210	67862	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	0.140000	0.681592	
mm_138444.1	chr17	35132067	35132267	+	1	NA	NA	NA	-415	NM_018816	55938	Mm.2161	NM_018816	ENSMUSG00000024391	Apom	1190010O19Rik|G3a|NG20	apolipoprotein M	protein-coding	0.010000	0.378109	-7(TTTTTTAAAGCG,+,0.00)
mm_19510.1	chr2	93869267	93869467	-	1	NA	NA	NA	-210	NM_001033452	381411	Mm.9889	NM_001033452	ENSMUSG00000075023	Accsl	Gm1967	1-aminocyclopropane-1-carboxylate synthase (non-functional)-like	protein-coding	0.020000	0.557214	
mm_114030.1	chr13	52646835	52647035	+	1	NA	NA	NA	50053	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.015000	0.537313	
mm_82550.1	chr9	20952718	20952918	-	1	NA	NA	NA	161	NM_010066	13433	Mm.128580	NM_010066	ENSMUSG00000004099	Dnmt1	Cxxc9|Dnmt|Dnmt1o|MCMT|MTase|Met-1|Met1|MommeD2|m.MmuI	DNA methyltransferase (cytosine-5) 1	protein-coding	0.090000	0.646766	
mm_93074.1	chr10	89433973	89434173	-	1	NA	NA	NA	9894	NM_001284344	237436	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0.015000	0.482587	74(GCCTTTATGCAG,+,0.00)
mm_132304.1	chr16	33594296	33594496	+	1	NA	NA	NA	75801	NM_001083902	171286	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.010000	0.517413	
mm_97304.1	chr11	76672359	76672559	+	1	NA	NA	NA	-11	NM_177182	320522	Mm.131585	NM_177182	ENSMUSG00000044243	Bhlha9	A830053O21Rik|Fingerin	basic helix-loop-helix family, member a9	protein-coding	0.020000	0.592040	
mm_87415.1	chr10	50252882	50253082	+	1	NA	NA	NA	-339687	NM_198007	77987	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.020000	0.477612	
mm_157146.1	chrX	9461329	9461529	-	1	NA	NA	NA	7895	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.432836	
mm_82150.1	chr9	123774868	123775068	+	1	NA	NA	NA	7757	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.015000	0.422886	
mm_103452.1	chr11	76243571	76243771	-	1	NA	NA	NA	28	NM_026029	67201	Mm.482113	NM_026029	ENSMUSG00000017286	Glod4	1700082G03Rik|2700085E05Rik|C81254	glyoxalase domain containing 4	protein-coding	0.100000	0.592040	
mm_158405.1	chrX	136837798	136837998	-	1	NA	NA	NA	15152	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.353234	
mm_137325.1	chr17	25015996	25016196	+	1	NA	NA	NA	10	NM_134126	106633	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	0.070000	0.522388	
mm_63574.1	chr7	128117720	128117920	+	1	NA	NA	NA	-11748	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.005000	0.467662	
mm_105179.1	chr11	101785133	101785333	-	1	NA	NA	NA	77	NM_008815	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.075000	0.686567	
mm_129132.1	chr15	76195615	76195815	-	1	NA	NA	NA	-5	NM_201394	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.040000	0.631841	
mm_4718.1	chr1	181051158	181051358	+	1	NA	NA	NA	21	NM_001033819	619326	Mm.355174	NM_001033819	ENSMUSG00000038768	9130409I23Rik	-	RIKEN cDNA 9130409I23 gene	protein-coding	0.015000	0.562189	
mm_133110.1	chr16	65520592	65520792	+	1	NA	NA	NA	63	NM_008849	18736	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.030000	0.532338	
mm_5601.1	chr1	39570849	39571049	-	1	NA	NA	NA	6398	NM_001033135	67702	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4|OTTMUSG00000026591	ring finger protein 149	protein-coding	0.000000	0.393035	
mm_143090.1	chr17	57080454	57080654	-	1	NA	NA	NA	-2044	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.005000	0.532338	
mm_71691.1	chr8	61327855	61328055	+	1	NA	NA	NA	-39083	NR_045475	69279	Mm.417857	NR_045475	ENSMUSG00000099419	1700001D01Rik	-	RIKEN cDNA 1700001D01 gene	ncRNA	0.010000	0.447761	30(CTTTTTATACCG,+,0.00)
mm_169087.1	chr13	37837570	37837770	+	1	NA	NA	NA	10277	NM_001039188	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.015000	0.492537	
mm_150354.1	chr19	34648168	34648368	+	1	NA	NA	NA	7379	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.025000	0.477612	
mm_13597.1	chr2	112618296	112618496	+	1	NA	NA	NA	58714	NM_001165935	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.010000	0.432836	
mm_14073.1	chr2	122771596	122771796	+	1	NA	NA	NA	-17	NR_027888	59010	Mm.28986	NM_021507	ENSMUSG00000005803	Sqrdl	0610039J17Rik|4930557M22Rik|SQOR	sulfide quinone reductase-like (yeast)	protein-coding	0.000000	0.462687	
mm_4892.1	chr1	188726912	188727112	+	1	NA	NA	NA	280828	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.000000	0.283582	32(TGGTTTATAAGA,-,0.00)
mm_41224.1	chr5	88593596	88593796	+	1	NA	NA	NA	10183	NM_027530	52822	Mm.270469	NM_027530	ENSMUSG00000029291	Rufy3	2810428M05Rik|6330416M07Rik|AW455998|AW538594|D5Bwg0860e|Ripx|Rpipx	RUN and FYVE domain containing 3	protein-coding	0.020000	0.477612	
mm_24038.1	chr3	87845197	87845397	+	1	NA	NA	NA	-1458	NM_001025571	27371	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	0.005000	0.472637	
mm_109240.1	chr12	109375296	109375496	+	1	NA	NA	NA	-77427	NR_033813	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.010000	0.502488	
mm_88801.1	chr10	80702605	80702805	+	1	NA	NA	NA	12	NM_027829	71564	Mm.35802	NM_027829	ENSMUSG00000055862	Izumo4	9030607L17Rik|AI550407	IZUMO family member 4	protein-coding	0.100000	0.731343	
mm_87710.1	chr10	60003232	60003432	+	1	NA	NA	NA	5	NM_001199187	69090	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0.035000	0.517413	
mm_143235.1	chr17	63499929	63500129	-	1	NA	NA	NA	551	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.135000	0.771144	
mm_29735.1	chr3	126921712	126921912	-	1	NA	NA	NA	21574	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.000000	0.313433	
mm_86622.1	chr10	13966114	13966314	+	1	NA	NA	NA	-165	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.105000	0.721393	
mm_24002.1	chr3	86986473	86986673	+	1	NA	NA	NA	-13	NM_007640	12480	Mm.389465	NM_007640	ENSMUSG00000041750	Cd1d2	CD1.2|Cd1b|Ly-38	CD1d2 antigen	protein-coding	0.045000	0.557214	
mm_3318.1	chr1	137906927	137907127	+	1	NA	NA	NA	-59428	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.020000	0.447761	
mm_151946.1	chr19	5800962	5801162	-	1	NA	NA	NA	1610	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.050000	0.567164	
mm_44500.1	chr5	23783555	23783755	-	1	NA	NA	NA	56	NM_001289780	78697	Mm.58660	NM_178403	ENSMUSG00000057541	Pus7	C330017I15Rik	pseudouridylate synthase 7	protein-coding	0.165000	0.796020	
mm_149813.1	chr19	23893447	23893647	+	1	NA	NA	NA	134671	NM_177034	319924	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.155000	0.706468	
mm_10845.1	chr2	24975935	24976135	+	1	NA	NA	NA	2	NM_146251	241274	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0.040000	0.597015	
mm_8913.1	chr1	163313160	163313360	-	1	NA	NA	NA	390	NM_011127	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.030000	0.442786	
mm_150462.1	chr19	38348608	38348808	+	1	NA	NA	NA	-47272	NM_175507	240660	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	0.015000	0.467662	
mm_78788.1	chr9	44043132	44043332	+	1	NA	NA	NA	-152	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.040000	0.601990	
mm_59348.1	chr7	25644799	25644999	+	1	NA	NA	NA	13862	NM_007533	12039	Mm.25848	NM_007533	ENSMUSG00000060376	Bckdha	-	branched chain ketoacid dehydrogenase E1, alpha polypeptide	protein-coding	0.015000	0.507463	
mm_70738.1	chr8	19141277	19141477	+	1	NA	NA	NA	618	NM_001286493	546038	Mm.99206	NM_001034905	ENSMUSG00000059463	Spag11b	EG546038|Ep2c/h|Spag11c/h	sperm associated antigen 11B	protein-coding	0.015000	0.427861	
mm_18313.1	chr2	54085468	54085668	-	1	NA	NA	NA	-16	NM_023396	67874	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	0.090000	0.696517	
mm_44091.1	chr5	149244846	149245046	+	1	NA	NA	NA	-20058	NM_001308462	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.025000	0.507463	
mm_81723.1	chr9	112234142	112234342	+	1	NA	NA	NA	-35	NR_033432	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA	0.020000	0.487562	
mm_167459.1	chr8	123417989	123418189	+	1	NA	NA	NA	6525	NM_023279	22152	Mm.40068	NM_023279	ENSMUSG00000062380	Tubb3	3200002H15Rik|M(beta)3|M(beta)6	tubulin, beta 3 class III	protein-coding	0.045000	0.547264	
mm_6441.1	chr1	73998374	73998574	-	1	NA	NA	NA	125973	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.015000	0.562189	
mm_42291.1	chr5	114407991	114408191	+	1	NA	NA	NA	3623	NR_105994	102465621		NR_105994	ENSMUSG00000098731	Mir7027	Gm27831|mmu-mir-7027	microRNA 7027	ncRNA	0.015000	0.517413	
mm_4538.1	chr1	176814781	176814981	+	1	NA	NA	NA	221	NM_029756	76816	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	0.040000	0.601990	
mm_109204.1	chr12	108675373	108675573	+	1	NA	NA	NA	16853	NR_029771	723909		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.010000	0.651741	-85(GCTTTTCAGGGC,+,0.00)
mm_161192.1	chr13	51567128	51567328	-	1	NA	NA	NA	-144	NM_009167	20418	Mm.131870	NM_009167	ENSMUSG00000021448	Shc3	N-Shc|Rai|ShcC	src homology 2 domain-containing transforming protein C3	protein-coding	0.115000	0.756219	
mm_135073.1	chr16	34262783	34262983	-	1	NA	NA	NA	251144	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.025000	0.552239	
mm_169714.1	chr15	77113677	77113877	-	1	NA	NA	NA	29379	NR_108037	74303	Mm.444304	NR_108037	ENSMUSG00000097267	1700109K24Rik	4933425G21Rik	RIKEN cDNA 1700109K24 gene	ncRNA	0.025000	0.442786	
mm_101744.1	chr11	43379210	43379410	-	1	NA	NA	NA	-4849	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.015000	0.393035	
mm_70202.1	chr7	144678707	144678907	-	1	NA	NA	NA	59785	NM_178642	101772	Mm.26700	NM_178642	ENSMUSG00000031075	Ano1	Tmem16a	anoctamin 1, calcium activated chloride channel	protein-coding	0.140000	0.751244	
mm_127639.1	chr15	102473414	102473614	+	1	NA	NA	NA	2882	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.005000	0.462687	
mm_13212.1	chr2	96317666	96317866	+	1	NA	NA	NA	-403	NM_001289742	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.025000	0.537313	
mm_42994.1	chr5	123344506	123344706	+	1	NA	NA	NA	158	NM_029850	77045	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0.085000	0.646766	
mm_25422.1	chr3	107873784	107873984	+	1	NA	NA	NA	-3346	NM_133867	99662	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0.015000	0.537313	
mm_135975.1	chr16	75047319	75047519	-	1	NA	NA	NA	538642	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.000000	0.462687	
mm_94412.1	chr11	5849221	5849421	+	1	NA	NA	NA	-11305	NM_017401	54125	Mm.260194	NM_017401	ENSMUSG00000020474	Polm	AI462166|B230309I03Rik|Tdt-N	polymerase (DNA directed), mu	protein-coding	0.005000	0.447761	
mm_159636.1	chr4	139575274	139575474	+	1	NA	NA	NA	654	NM_001205173	212632	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	0.140000	0.781095	
mm_75098.1	chr8	34108417	34108617	-	1	NA	NA	NA	195	NM_001293759	22428	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.065000	0.592040	
mm_52315.1	chr6	108835997	108836197	+	1	NA	NA	NA	7456	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.010000	0.482587	-89(GCCCTTAAAAGT,-,0.00)
mm_51889.1	chr6	90604834	90605034	+	1	NA	NA	NA	54	NM_027868	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.100000	0.741294	
mm_129400.1	chr15	78284077	78284277	-	1	NA	NA	NA	672	NR_106138	102466845		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0.005000	0.577114	
mm_36872.1	chr4	107177606	107177806	-	1	NA	NA	NA	660	NM_025617	66526	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0.040000	0.437811	
mm_23656.1	chr3	67892042	67892242	+	1	NA	NA	NA	-78	NM_001113419	100505386	Mm.331064	NM_001113419	ENSMUSG00000102422	Gm21949	Iqcj-schip1|Schip-1-iqcj|Schip1	predicted gene, 21949	protein-coding	0.020000	0.507463	
mm_62662.1	chr7	108934318	108934518	+	1	NA	NA	NA	3	NM_025344	66085	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0.065000	0.532338	
mm_107742.1	chr12	58212335	58212535	+	1	NA	NA	NA	631	NM_009216	20605	Mm.278336	NM_009216	ENSMUSG00000035431	Sstr1	SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1	somatostatin receptor 1	protein-coding	0.075000	0.696517	
mm_77726.1	chr8	126849865	126850065	-	1	NA	NA	NA	95956	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.020000	0.522388	
mm_149264.1	chr19	10577088	10577288	+	1	NA	NA	NA	31	NM_001282067	225912	Mm.252701	NM_201351	ENSMUSG00000034445	Cyb561a3	2310004G04Rik|Cybasc3|Lcytb	cytochrome b561 family, member A3	protein-coding	0.060000	0.542289	
mm_24682.1	chr3	94932957	94933157	+	1	NA	NA	NA	-26	NM_009150	20341	Mm.196558	NM_009150	ENSMUSG00000068874	Selenbp1	Lp56|Lpsb|SBP56	selenium binding protein 1	protein-coding	0.015000	0.577114	-90(CCCTTTATAGTT,+,0.00)
mm_44998.1	chr5	38159634	38159834	-	1	NA	NA	NA	-267	NM_010942	18196	Mm.7414	NM_010942	ENSMUSG00000029126	Nsg1	Neep21|m234|p21	neuron specific gene family member 1	protein-coding	0.090000	0.686567	
mm_112696.1	chr13	17695165	17695365	+	1	NA	NA	NA	-148	NM_025479	66308	Mm.291109	NM_025479	ENSMUSG00000012429	Mplkip	2810021B07Rik|C330007M08Rik|Ttdn1	M-phase specific PLK1 intereacting protein	protein-coding	0.060000	0.547264	
mm_95253.1	chr11	44621101	44621301	+	1	NA	NA	NA	3101	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.040000	0.601990	
mm_135211.1	chr16	36621495	36621695	-	1	NA	NA	NA	44482	NM_019388	12524	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.000000	0.457711	
mm_76770.1	chr8	95817592	95817792	-	1	NA	NA	NA	-10230	NM_001205226	234594	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	0.010000	0.517413	
mm_160208.1	chr7	92661769	92661969	-	1	NA	NA	NA	8043	NM_029078	74737	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	0.015000	0.427861	
mm_7288.1	chr1	97769314	97769514	-	1	NA	NA	NA	678	NM_173760	227399	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	0.045000	0.517413	
mm_69822.1	chr7	141265769	141265969	-	1	NA	NA	NA	555	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.005000	0.432836	
mm_56335.1	chr6	92677755	92677955	-	1	NA	NA	NA	28329	NM_001081146	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.010000	0.348259	
mm_104694.1	chr11	97884031	97884231	-	1	NA	NA	NA	23	NM_001081435	72973	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	0.075000	0.592040	
mm_62569.1	chr7	104244378	104244578	+	1	NA	NA	NA	21	NM_030684	94094	Mm.326945	NM_030684	ENSMUSG00000056144	Trim34a	Trim34|Trim34-1	tripartite motif-containing 34A	protein-coding	0.010000	0.492537	
mm_64716.1	chr7	4655460	4655660	-	1	NA	NA	NA	3390	NM_172894	243819	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.015000	0.512438	
mm_108837.1	chr12	96662214	96662414	+	1	NA	NA	NA	-615092	NR_103800	69423	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0.010000	0.512438	
mm_105567.1	chr11	106578981	106579181	-	1	NA	NA	NA	33849	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.005000	0.497512	
mm_17346.1	chr2	26604314	26604514	-	1	NA	NA	NA	3	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.115000	0.776119	
mm_89989.1	chr10	112002266	112002466	+	1	NA	NA	NA	-5102	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.010000	0.537313	
mm_110526.1	chr12	54937582	54937782	-	1	NA	NA	NA	48654	NM_013815	217578	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.000000	0.512438	
mm_31524.1	chr4	54947748	54947948	+	1	NA	NA	NA	-97	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.040000	0.542289	
mm_160040.1	chr6	137170530	137170730	-	1	NA	NA	NA	-134	NM_181988	232441	Mm.46233	NM_181988	ENSMUSG00000030222	Rerg	-	RAS-like, estrogen-regulated, growth-inhibitor	protein-coding	0.015000	0.547264	
mm_52777.1	chr6	121245806	121246006	+	1	NA	NA	NA	0	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.065000	0.656716	
mm_105025.1	chr11	100472665	100472865	-	1	NA	NA	NA	17	NM_172565	217194	Mm.183320	NM_172565	ENSMUSG00000048732	Klhl11	BC011167	kelch-like 11	protein-coding	0.125000	0.671642	
mm_53453.1	chr6	134641008	134641208	+	1	NA	NA	NA	168	NM_026371	67774	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	0.100000	0.726368	
mm_104125.1	chr11	86757331	86757531	-	1	NA	NA	NA	61	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.070000	0.706468	
mm_161898.1	chr18	46198745	46198945	+	1	NA	NA	NA	-27	NM_001170855	28105	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.125000	0.771144	
mm_125529.1	chr15	57919145	57919345	+	1	NA	NA	NA	7046	NM_001167679	210544	Mm.390835	NM_199300	ENSMUSG00000022364	Tbc1d31	4B3|D330013L20Rik|Gm85|Wdr67	TBC1 domain family, member 31	protein-coding	0.020000	0.452736	
mm_141200.1	chr17	27028513	27028713	-	1	NA	NA	NA	13	NM_007523	12018	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	0.055000	0.626866	
mm_104768.1	chr11	98535574	98535774	-	1	NA	NA	NA	10357	NM_011771	22780	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.000000	0.383085	
mm_7044.1	chr1	87125624	87125824	-	1	NA	NA	NA	716	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.045000	0.562189	
mm_163411.1	chr12	77238621	77238821	+	1	NA	NA	NA	-18	NR_045554	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.150000	0.786070	
mm_58993.1	chr7	19131621	19131821	+	1	NA	NA	NA	11862	NM_175530	243867	Mm.230830	NM_175530	ENSMUSG00000050428	Fbxo46	20D7-FC4|4932704E22Rik|Fbxo34l	F-box protein 46	protein-coding	0.105000	0.721393	
mm_162810.1	chr10	79664279	79664479	+	1	NA	NA	NA	-195	NM_013591	17123	Mm.391556	NM_013591	ENSMUSG00000020310	Madcam1	AV211525	mucosal vascular addressin cell adhesion molecule 1	protein-coding	0.020000	0.577114	
mm_31311.1	chr4	46082781	46082981	+	1	NA	NA	NA	43659	NM_021883	21916	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0.020000	0.462687	
mm_104643.1	chr11	97537061	97537261	-	1	NA	NA	NA	-36821	NM_001289118	100141474	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.060000	0.666667	
mm_170932.1	chr2	42956079	42956279	-	1	NA	NA	NA	-302581	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding	0.045000	0.626866	
mm_23055.1	chr3	35754028	35754228	+	1	NA	NA	NA	-10	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.140000	0.786070	
mm_53011.1	chr6	123274917	123275117	+	1	NA	NA	NA	12910	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.000000	0.363184	
mm_35792.1	chr4	46528278	46528478	-	1	NA	NA	NA	7763	NM_029077	74735	Mm.240252	NM_029077	ENSMUSG00000039853	Trim14	5830400N10Rik|pub	tripartite motif-containing 14	protein-coding	0.010000	0.482587	
mm_59672.1	chr7	28381170	28381370	+	1	NA	NA	NA	-2042	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.070000	0.611940	
mm_112428.1	chr13	4233692	4233892	+	1	NA	NA	NA	52	NM_001013785	432720	Mm.22832	NM_001013785	ENSMUSG00000071551	Akr1c19	1810010N06Rik	aldo-keto reductase family 1, member C19	protein-coding	0.015000	0.477612	
mm_3458.1	chr1	150103876	150104076	+	1	NA	NA	NA	3945	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.547264	
mm_148014.1	chr18	68300150	68300350	-	1	NA	NA	NA	83	NM_153794	108654	Mm.125857	NM_153794	ENSMUSG00000038121	Fam210a	4933403F05Rik|AA987140|AV134576|AW491926	family with sequence similarity 210, member A	protein-coding	0.105000	0.681592	
mm_136397.1	chr16	93358620	93358820	-	1	NA	NA	NA	-8	NR_040489	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.010000	0.467662	
mm_154764.1	chrX	12088944	12089144	+	1	NA	NA	NA	-8491	NM_029510	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.055000	0.666667	
mm_53732.1	chr6	145121638	145121838	+	1	NA	NA	NA	-1	NM_008511	16970	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.030000	0.587065	
mm_25002.1	chr3	97651726	97651926	+	1	NA	NA	NA	-6386	NM_182997	108097	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.020000	0.512438	
mm_32944.1	chr4	119539046	119539246	+	1	NA	NA	NA	-377	NM_001004178	433752	Mm.425205	NM_001004178	ENSMUSG00000087385	AA415398	-	expressed sequence AA415398	protein-coding	0.025000	0.537313	
mm_173217.1	chrX	74170529	74170729	+	1	NA	NA	NA	-2791	NM_001126488	385380	Mm.475616	NM_001126488	ENSMUSG00000062564	Tex28	Gm1538|Gm1811	testis expressed 28	protein-coding	0.050000	0.532338	
mm_32837.1	chr4	117835155	117835355	+	1	NA	NA	NA	-3	NM_008135	14664	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	0.055000	0.631841	
mm_76108.1	chr8	80395121	80395321	-	1	NA	NA	NA	-98824	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.015000	0.412935	
mm_52992.1	chr6	123266072	123266272	+	1	NA	NA	NA	4065	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.010000	0.437811	
mm_133032.1	chr16	57352719	57352919	+	1	NA	NA	NA	-458	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.020000	0.552239	
mm_120633.1	chr14	70466734	70466934	+	1	NA	NA	NA	9317	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.040000	0.601990	
mm_116020.1	chr13	24831281	24831481	-	1	NA	NA	NA	108	NM_025790	66834	Mm.2125	NM_025790	ENSMUSG00000006717	Acot13	0610006O17Rik|Them2	acyl-CoA thioesterase 13	protein-coding	0.085000	0.592040	
mm_94554.1	chr11	11522132	11522332	+	1	NA	NA	NA	32966	NM_028669	73862	Mm.159077	NM_028669	ENSMUSG00000020191	4930415F15Rik	-	RIKEN cDNA 4930415F15 gene	protein-coding	0.005000	0.482587	
mm_134413.1	chr16	17704305	17704505	-	1	NA	NA	NA	18495	NM_001285886	94112	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.010000	0.452736	
mm_54692.1	chr6	39445712	39445912	-	1	NA	NA	NA	-25443	NM_018810	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.020000	0.417910	30(GAGCCTAAAAGG,-,0.00)
mm_17885.1	chr2	34962841	34963041	-	1	NA	NA	NA	-1169	NM_001326601	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.015000	0.462687	61(AGCCATTAAAGC,-,0.00)
mm_88460.1	chr10	77560928	77561128	+	1	NA	NA	NA	-20739	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.015000	0.517413	
mm_133354.1	chr16	84606396	84606596	+	1	NA	NA	NA	-73293	NR_040537	78023	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0.010000	0.368159	
mm_15282.1	chr2	155276428	155276628	+	1	NA	NA	NA	164	NR_046364	66734	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0.145000	0.751244	
mm_81920.1	chr9	120116417	120116617	+	1	NA	NA	NA	6118	NM_144793	208638	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0.030000	0.567164	
mm_125276.1	chr15	36210410	36210610	+	1	NA	NA	NA	29654	NR_106173	102465888		NR_106173	ENSMUSG00000098457	Mir8097	Gm27497|mmu-mir-8097	microRNA 8097	ncRNA	0.100000	0.706468	
mm_1368.1	chr1	66439673	66439873	+	1	NA	NA	NA	-28674	NM_175510	329178	Mm.44798	NM_175510	ENSMUSG00000055567	Unc80	C030018G13Rik|C230061B10Rik|UNC-80	unc-80, NALCN activator	protein-coding	0.005000	0.348259	
mm_145956.1	chr18	67700540	67700740	+	1	NA	NA	NA	23981	NM_001127177	19255	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	0.000000	0.427861	-33(GCCTATAAATAA,-,0.00)
mm_41040.1	chr5	86086173	86086373	+	1	NA	NA	NA	14527	NM_001310639	56792	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.005000	0.407960	
mm_111469.1	chr12	98574635	98574835	-	1	NA	NA	NA	-23	NM_001316665	72258	Mm.196158	NM_029911	ENSMUSG00000033854	Kcnk10	1700024D23Rik|3010005K24Rik|Trek2	potassium channel, subfamily K, member 10	protein-coding	0.115000	0.681592	
mm_136258.1	chr16	91010949	91011149	-	1	NA	NA	NA	46	NM_001045515	104015	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.125000	0.786070	
mm_120508.1	chr14	66296996	66297196	+	1	NA	NA	NA	33	NR_038077	69303	Mm.352258	NR_038077	ENSMUSG00000085984	1700001G11Rik	-	RIKEN cDNA 1700001G11 gene	ncRNA	0.085000	0.651741	
mm_133211.1	chr16	75592815	75593015	+	1	NA	NA	NA	24	NM_198302	224344	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	0.110000	0.721393	
mm_67797.1	chr7	97738170	97738370	-	1	NA	NA	NA	-23	NM_175105	66333	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.100000	0.751244	
mm_123685.1	chr14	69555287	69555487	-	1	NA	NA	NA	0	NR_045091	100504477	Mm.396396	NR_045091		Gm16677	-	predicted gene, 16677	ncRNA	0.145000	0.711443	
mm_27086.1	chr3	30013234	30013434	-	1	NA	NA	NA	-130	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.030000	0.487562	
mm_32561.1	chr4	109666761	109666961	+	1	NA	NA	NA	-105	NM_001301368	12580	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	protein-coding	0.145000	0.800995	
mm_61259.1	chr7	66060681	66060881	+	1	NA	NA	NA	445	NM_021336	68981	Mm.22362	NM_021336	ENSMUSG00000030512	Snrpa1	1500015N06Rik	small nuclear ribonucleoprotein polypeptide A'	protein-coding	0.120000	0.731343	
mm_171371.1	chr4	119282247	119282447	-	1	NA	NA	NA	12166	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.055000	0.532338	
mm_112773.1	chr13	19623207	19623407	+	1	NA	NA	NA	132	NM_016687	20379	Mm.42095	NM_016687	ENSMUSG00000021319	Sfrp4	-	secreted frizzled-related protein 4	protein-coding	0.045000	0.626866	
mm_16297.1	chr2	174285258	174285458	+	1	NA	NA	NA	1038	NM_022000	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.070000	0.676617	
mm_162715.1	chr10	33461590	33461790	+	1	NA	NA	NA	162910	NM_175448	215890	Mm.94461	NM_175448	ENSMUSG00000019785	Clvs2	A330019N05Rik|Rlbp1l2	clavesin 2	protein-coding	0.000000	0.393035	
mm_33098.1	chr4	124700585	124700785	+	1	NA	NA	NA	-14	NM_010213	14201	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	0.110000	0.781095	
mm_84959.1	chr9	83587151	83587351	-	1	NA	NA	NA	38913	NM_172507	212531	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.030000	0.457711	
mm_38108.1	chr4	134532078	134532278	-	1	NA	NA	NA	3090	NM_001256112	76824	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	0.010000	0.532338	
mm_23486.1	chr3	60501128	60501328	+	1	NA	NA	NA	49	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.170000	0.791045	
mm_80355.1	chr9	75190142	75190342	+	1	NA	NA	NA	-41772	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.000000	0.378109	
mm_75782.1	chr8	70018520	70018720	-	1	NA	NA	NA	-22236	NM_145596	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.005000	0.427861	
mm_168999.1	chr13	100786374	100786574	-	1	NA	NA	NA	12	NM_172301	268697	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	0.070000	0.597015	
mm_147337.1	chr18	42899358	42899558	-	1	NA	NA	NA	48	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.070000	0.711443	-83(CGCCTTTAATGC,-,0.00),-81(CCTTTAATGCAC,+,0.00)
mm_65264.1	chr7	19921043	19921243	-	1	NA	NA	NA	0	NM_027514	52118	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.065000	0.592040	
mm_172668.1	chr8	43306855	43307055	-	1	NA	NA	NA	54	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.040000	0.522388	
mm_166092.1	chr4	140750418	140750618	-	1	NA	NA	NA	-7875	NM_153106	242726	Mm.271661	NM_153106	ENSMUSG00000040935	Padi6	Pad6|Padi5|ePAD	peptidyl arginine deiminase, type VI	protein-coding	0.045000	0.621891	
mm_95233.1	chr11	44537956	44538156	+	1	NA	NA	NA	18679	NM_001166553	74315	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.015000	0.492537	
mm_30024.1	chr3	135665419	135665619	-	1	NA	NA	NA	26028	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.030000	0.497512	
mm_79808.1	chr9	64177347	64177547	+	1	NA	NA	NA	-1850	NM_183316	330959	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	0.025000	0.467662	
mm_90629.1	chr10	128459649	128459849	+	1	NA	NA	NA	513	NM_001114097	68094	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	0.120000	0.776119	
mm_131957.1	chr16	24486867	24487067	+	1	NA	NA	NA	38876	NM_001145952	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.000000	0.407960	
mm_49765.1	chr6	34863007	34863207	+	1	NA	NA	NA	-39	NM_197986	68487	Mm.248440	NM_197986	ENSMUSG00000057137	Tmem140	1110007F12Rik	transmembrane protein 140	protein-coding	0.020000	0.457711	
mm_94009.1	chr10	127620896	127621096	-	1	NA	NA	NA	152	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.045000	0.661692	
mm_28827.1	chr3	96293899	96294099	-	1	NA	NA	NA	-30	NM_010186	14129	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0.000000	0.437811	-78(TCCCAGAAAAGG,-,0.00)
mm_28185.1	chr3	88058139	88058339	-	1	NA	NA	NA	256	NM_144897	246703	Mm.205996	NM_144897	ENSMUSG00000028070	Apoa1bp	AA087124|AI-BP|AIBP|Apoa1ip|ESTM37|Naxe	apolipoprotein A-I binding protein	protein-coding	0.065000	0.651741	
mm_131237.1	chr16	10484052	10484252	+	1	NA	NA	NA	-4026	NM_007575	12265	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.020000	0.497512	
mm_118849.1	chr14	25666100	25666300	+	1	NA	NA	NA	-27970	NM_134084	105675	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.025000	0.427861	
mm_15842.1	chr2	164745934	164746134	+	1	NA	NA	NA	19	NM_133763	76233	Mm.440009	NM_133763	ENSMUSG00000017299	Dnttip1	6430706C13Rik	deoxynucleotidyltransferase, terminal, interacting protein 1	protein-coding	0.160000	0.781095	
mm_125559.1	chr15	58889011	58889211	+	1	NA	NA	NA	-118	NM_175226	75841	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0.125000	0.796020	
mm_123532.1	chr14	66804801	66805001	-	1	NA	NA	NA	63699	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.005000	0.358209	
mm_73581.1	chr8	109838675	109838875	+	1	NA	NA	NA	-537	NR_028532	100217432		NR_028532		Snord71	MBII-239	small nucleolar RNA, C/D box 71	snoRNA	0.005000	0.447761	
mm_17119.1	chr2	24475501	24475701	-	1	NA	NA	NA	-2	NM_011040	18510	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0.030000	0.641791	
mm_71349.1	chr8	45628063	45628263	+	1	NA	NA	NA	412	NM_001310707	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.030000	0.572139	
mm_84016.1	chr9	57653343	57653543	-	1	NA	NA	NA	188	NM_001304761	12988	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.010000	0.552239	
mm_38812.1	chr4	148444636	148444836	-	1	NA	NA	NA	15	NM_027873	71707	Mm.292503	NM_027873	ENSMUSG00000047719	Ubiad1	1200002M06Rik|AI426463|AW320947|Tere1	UbiA prenyltransferase domain containing 1	protein-coding	0.110000	0.721393	
mm_140766.1	chr17	17624529	17624729	-	1	NA	NA	NA	-140	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.105000	0.696517	
mm_128484.1	chr15	50889978	50890178	-	1	NA	NA	NA	-37	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.100000	0.582090	-59(GTCTCTTTAAGG,-,0.00)
mm_33570.1	chr4	132274276	132274476	+	1	NA	NA	NA	1	NM_025579	66464	Mm.331926	NM_025579	ENSMUSG00000028899	Taf12	20kDa|2810422D08Rik|AW557038|Taf2J	TATA-box binding protein associated factor 12	protein-coding	0.110000	0.666667	
mm_129414.1	chr15	78336322	78336522	-	1	NA	NA	NA	10432	NM_007780	12983	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.010000	0.547264	
mm_19161.1	chr2	83725338	83725538	-	1	NA	NA	NA	1041	NM_008402	16410	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.035000	0.432836	
mm_121115.1	chr14	101840226	101840426	+	1	NA	NA	NA	-297	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.030000	0.497512	
mm_107439.1	chr12	36314043	36314243	+	1	NA	NA	NA	-26	NM_025312	66042	Mm.43375	NM_025312	ENSMUSG00000036169	Sostdc1	0610006G05Rik|Sostl|USAG-1|Wise|ectodin	sclerostin domain containing 1	protein-coding	0.015000	0.497512	48(GGCTATATAAAG,-,0.00),50(CTATATAAAGGG,+,0.00),50(CTATATAAAGGG,-,0.00)
mm_74731.1	chr8	18296389	18296589	-	1	NA	NA	NA	-298684	NM_173189	244329	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT	microcephaly, primary autosomal recessive 1	protein-coding	0.010000	0.378109	-77(ATCTATAAAAGT,-,0.00)
mm_125429.1	chr15	44064100	44064300	+	1	NA	NA	NA	-131935	NM_013696	22045	Mm.309350	NM_013696	ENSMUSG00000038760	Trhr	TRH-R1	thyrotropin releasing hormone receptor	protein-coding	0.030000	0.522388	
mm_146648.1	chr18	11051249	11051449	-	1	NA	NA	NA	-1161	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.030000	0.472637	
mm_40782.1	chr5	67306929	67307129	+	1	NA	NA	NA	74	NM_001310629	109108	Mm.234455	NM_178651	ENSMUSG00000029221	Slc30a9	2310024J23Rik|AL024256|GAC63|HUEL|znT-9	solute carrier family 30 (zinc transporter), member 9	protein-coding	0.140000	0.746269	
mm_106672.1	chr11	121673025	121673225	-	1	NA	NA	NA	26	NM_178664	210004	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0.065000	0.601990	
mm_155648.1	chrX	85716446	85716646	+	1	NA	NA	NA	60273	NM_001294140	14933	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	0.040000	0.572139	
mm_116644.1	chr13	49147884	49148084	-	1	NA	NA	NA	344	NM_029361	75607	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.150000	0.781095	
mm_2756.1	chr1	129273395	129273595	+	1	NA	NA	NA	191	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	0.075000	0.631841	
mm_152396.1	chr19	10525617	10525817	-	1	NA	NA	NA	473	NM_172302	269061	Mm.490260	NM_172302	ENSMUSG00000034820	Cpsf7	5730453I16Rik|AL022757|C330017N18Rik	cleavage and polyadenylation specific factor 7	protein-coding	0.140000	0.761194	
mm_116612.1	chr13	48870913	48871113	-	1	NA	NA	NA	-128	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.200000	0.850746	
mm_97251.1	chr11	75755497	75755697	+	1	NA	NA	NA	22710	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.005000	0.353234	
mm_164441.1	chr16	49855011	49855211	+	1	NA	NA	NA	-543	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.020000	0.537313	
mm_97988.1	chr11	83942117	83942317	+	1	NA	NA	NA	127	NM_030096	78394	Mm.280544	NM_030096	ENSMUSG00000020677	Ddx52	2700029C06Rik|ROK1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	protein-coding	0.115000	0.616915	
mm_16342.1	chr2	174344291	174344491	+	1	NA	NA	NA	14302	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.005000	0.437811	
mm_65579.1	chr7	27228195	27228395	-	1	NA	NA	NA	302	NM_181593	233011	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	0.115000	0.711443	
mm_41239.1	chr5	88765055	88765255	+	1	NA	NA	NA	142	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.135000	0.716418	
mm_14380.1	chr2	129630723	129630923	+	1	NA	NA	NA	37654	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.010000	0.447761	29(CAGTCTTAAAGC,-,0.00)
mm_116837.1	chr13	54687979	54688179	-	1	NA	NA	NA	121	NM_001146027	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.080000	0.646766	
mm_9974.1	chr1	191201164	191201364	-	1	NA	NA	NA	-17931	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.000000	0.467662	
mm_25546.1	chr3	115888001	115888201	+	1	NA	NA	NA	19	NR_027895	68161	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.070000	0.606965	
mm_109983.1	chr12	13249065	13249265	-	1	NA	NA	NA	9	NM_134040	104721	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	0.135000	0.661692	
mm_81362.1	chr9	108692107	108692307	+	1	NA	NA	NA	64	NM_008924	19087	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0.185000	0.800995	
mm_140726.1	chr17	15498169	15498369	-	1	NA	NA	NA	7	NM_011185	19170	Mm.32912	NM_011185	ENSMUSG00000014769	Psmb1	AA409053|C81484|Lmpc5	proteasome (prosome, macropain) subunit, beta type 1	protein-coding	0.095000	0.661692	
mm_144952.1	chr18	37808616	37808816	+	1	NA	NA	NA	2306	NM_033581	93706	Mm.247203	NM_033581	ENSMUSG00000102918	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding	0.045000	0.537313	
mm_1106.1	chr1	59763659	59763859	+	1	NA	NA	NA	-520	NM_007561	12168	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0.130000	0.701493	
mm_36855.1	chr4	106855049	106855249	-	1	NA	NA	NA	-50142	NM_001347159	329910	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0.010000	0.592040	
mm_99649.1	chr11	105589683	105589883	+	1	NA	NA	NA	-203	NM_181071	77097	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.180000	0.850746	
mm_135570.1	chr16	50330876	50331076	-	1	NA	NA	NA	101413	NM_027444	70508	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.010000	0.457711	
mm_14326.1	chr2	129367179	129367379	+	1	NA	NA	NA	-2623	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.020000	0.502488	-73(GGCCAGAAAGGG,-,0.00)
mm_16365.1	chr2	174760666	174760866	+	1	NA	NA	NA	147	NM_007903	13616	Mm.9478	NM_007903	ENSMUSG00000027524	Edn3	ET-3|PPET3|ls|tmgc48	endothelin 3	protein-coding	0.090000	0.701493	
mm_36965.1	chr4	109202136	109202336	-	1	NA	NA	NA	36	NM_133885	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.080000	0.621891	-32(TGCCATATAGGC,-,0.00)
mm_55085.1	chr6	49214918	49215118	-	1	NA	NA	NA	-64	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.070000	0.537313	
mm_158709.1	chrX	162415193	162415393	-	1	NA	NA	NA	228365	NM_001290633	194590	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	0.000000	0.447761	
mm_69672.1	chr7	139983890	139984090	-	1	NA	NA	NA	2884	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.010000	0.552239	
mm_58167.1	chr6	142571528	142571728	-	1	NA	NA	NA	-14	NM_008428	16523	Mm.1482	NM_008428	ENSMUSG00000030247	Kcnj8	AI448900|Kir6.1|gnite|slmbr|sltr|uKATP-1	potassium inwardly-rectifying channel, subfamily J, member 8	protein-coding	0.050000	0.572139	-33(GCCTTTTAAAGA,-,0.00),-32(CCTTTTAAAGAT,+,0.00)
mm_50508.1	chr6	49036586	49036786	+	1	NA	NA	NA	168	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.035000	0.587065	
mm_25885.1	chr3	130874018	130874218	+	1	NA	NA	NA	-143720	NM_001005859	68436	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.015000	0.497512	
mm_142643.1	chr17	47437134	47437334	-	1	NA	NA	NA	141	NM_029296	75462	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.040000	0.557214	
mm_162418.1	chr1	91295907	91296107	+	1	NA	NA	NA	-2331	NM_016717	50880	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	0.050000	0.497512	
mm_103429.1	chr11	75751826	75752026	-	1	NA	NA	NA	19039	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.010000	0.393035	
mm_87081.1	chr10	29313133	29313333	+	1	NA	NA	NA	67	NM_001110195	52665	Mm.28930	NM_025855	ENSMUSG00000019883	Echdc1	1700028A24Rik|AI314462|AI930038|D10Ertd667e|MMCD	enoyl Coenzyme A hydratase domain containing 1	protein-coding	0.070000	0.641791	
mm_100997.1	chr11	8468372	8468572	-	1	NA	NA	NA	196063	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.025000	0.631841	
mm_11448.1	chr2	32081502	32081702	+	1	NA	NA	NA	2103	NM_175511	241303	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.030000	0.502488	61(CTCTCTTAAAGC,-,0.00)
mm_142850.1	chr17	51804165	51804365	-	1	NA	NA	NA	7789	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.010000	0.422886	
mm_8594.1	chr1	156007615	156007815	-	1	NA	NA	NA	27102	NM_001160019	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.005000	0.412935	
mm_79104.1	chr9	46256817	46257017	+	1	NA	NA	NA	-11691	NM_080434	66113	Mm.29738	NM_080434	ENSMUSG00000032079	Apoa5	1300007O05Rik|Apoav|RAP3	apolipoprotein A-V	protein-coding	0.020000	0.527363	
mm_129127.1	chr15	76188872	76189072	-	1	NA	NA	NA	6738	NM_201394	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.050000	0.606965	
mm_8315.1	chr1	144249040	144249240	-	1	NA	NA	NA	-36	NM_015811	50778	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.030000	0.442786	47(CGCTATATAAAG,-,0.00)
mm_95470.1	chr11	50772114	50772314	+	1	NA	NA	NA	55517	NM_013922	30944	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding	0.000000	0.373134	
mm_81915.1	chr9	120110403	120110603	+	1	NA	NA	NA	104	NM_144793	208638	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0.115000	0.711443	
mm_167326.1	chr8	69901682	69901882	+	1	NA	NA	NA	-402	NM_032004	83984	Mm.432504	NM_032004	ENSMUSG00000047654	Tssk6	Sstk|TSK-6|TSSK-6	testis-specific serine kinase 6	protein-coding	0.050000	0.547264	
mm_143757.1	chr17	81604177	81604377	-	1	NA	NA	NA	134110	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.000000	0.452736	
mm_27148.1	chr3	32984981	32985181	-	1	NA	NA	NA	-2	NM_001163517	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.015000	0.422886	
mm_16510.1	chr2	181365328	181365528	+	1	NA	NA	NA	5	NM_001048148	229007	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	0.130000	0.736318	
mm_17137.1	chr2	24975753	24975953	-	1	NA	NA	NA	-180	NM_146251	241274	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0.015000	0.567164	
mm_102241.1	chr11	54985071	54985271	-	1	NA	NA	NA	-22231	NM_001271455	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.015000	0.517413	
mm_92351.1	chr10	75892972	75893172	-	1	NA	NA	NA	-326	NM_024440	70377	Mm.275878	NM_024440	ENSMUSG00000009092	Derl3	1810006I20Rik|1810063P04Rik|IZP6|derlin-3	Der1-like domain family, member 3	protein-coding	0.035000	0.532338	
mm_47099.1	chr5	118169487	118169687	-	1	NA	NA	NA	-177	NM_007545	12123	Mm.384468	NM_007545	ENSMUSG00000046607	Hrk	AI838259|Bid3|DP5|harakiri	harakiri, BCL2 interacting protein (contains only BH3 domain)	protein-coding	0.090000	0.701493	
mm_99661.1	chr11	105901803	105902003	+	1	NA	NA	NA	42244	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.000000	0.308458	
mm_93435.1	chr10	109010837	109011037	-	1	NA	NA	NA	38	NM_009306	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding	0.045000	0.616915	
mm_62994.1	chr7	120635126	120635326	+	1	NA	NA	NA	37	NM_025899	67003	Mm.334206	NM_025899	ENSMUSG00000030884	Uqcrc2	1500004O06Rik	ubiquinol cytochrome c reductase core protein 2	protein-coding	0.075000	0.641791	
mm_156121.1	chrX	115683603	115683803	+	1	NA	NA	NA	756714	NR_130989	78086		NR_130989	ENSMUSG00000085619	4930555B12Rik	-	RIKEN cDNA 4930555B12 gene	ncRNA	0.005000	0.323383	
mm_91484.1	chr10	35485258	35485458	-	1	NA	NA	NA	1001958	NM_010237	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.025000	0.482587	
mm_18254.1	chr2	52263514	52263714	-	1	NA	NA	NA	-27388	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.015000	0.452736	
mm_55124.1	chr6	50566447	50566647	-	1	NA	NA	NA	-73	NM_007808	13063	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0.135000	0.661692	
mm_75061.1	chr8	33666274	33666474	-	1	NA	NA	NA	13136	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.025000	0.482587	
mm_40855.1	chr5	73502567	73502767	+	1	NA	NA	NA	11641	NM_178896	100737	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.025000	0.587065	
mm_172575.1	chr8	11312925	11313125	+	1	NA	NA	NA	-199	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.105000	0.736318	
mm_34530.1	chr4	149334565	149334765	+	1	NA	NA	NA	26	NR_131918	74310	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0.010000	0.557214	
mm_29933.1	chr3	131504849	131505049	-	1	NA	NA	NA	-59819	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.025000	0.517413	
mm_34024.1	chr4	138045251	138045451	+	1	NA	NA	NA	51895	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.045000	0.592040	
mm_118862.1	chr14	25842129	25842329	+	1	NA	NA	NA	74	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.120000	0.686567	
mm_46245.1	chr5	99243133	99243333	-	1	NA	NA	NA	9694	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.020000	0.452736	
mm_125190.1	chr15	32489587	32489787	+	1	NA	NA	NA	244874	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding	0.005000	0.373134	
mm_166043.1	chr4	130520432	130520632	+	1	NA	NA	NA	53504	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.040000	0.587065	
mm_105789.1	chr11	109827968	109828168	-	1	NA	NA	NA	-22	NM_001162428	69324	Mm.31700	NM_027038	ENSMUSG00000020617	1700012B07Rik	1700069D21Rik	RIKEN cDNA 1700012B07 gene	protein-coding	0.010000	0.482587	83(TTGTATAAAGGC,-,0.00)
mm_139156.1	chr17	47540631	47540831	+	1	NA	NA	NA	35680	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.025000	0.442786	
mm_162439.1	chr1	109983657	109983857	+	1	NA	NA	NA	34	NM_172853	241201	Mm.213407	NM_172853	ENSMUSG00000026312	Cdh7	9330156F07Rik|CDH7L1	cadherin 7, type 2	protein-coding	0.020000	0.487562	
mm_172426.1	chr7	28259413	28259613	-	1	NA	NA	NA	-8368	NM_198425	386655	Mm.258201	NM_198425	ENSMUSG00000046058	Eid2	Cri2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding	0.025000	0.552239	
mm_53772.1	chr6	145953481	145953681	+	1	NA	NA	NA	19434	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.010000	0.467662	
mm_62010.1	chr7	91262629	91262829	+	1	NA	NA	NA	171943	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.055000	0.611940	
mm_150861.1	chr19	45016840	45017040	+	1	NA	NA	NA	-1195	NM_001130526	226154	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.025000	0.487562	-34(GTGTATTTAAAG,-,0.00)
mm_43299.1	chr5	134582990	134583190	+	1	NA	NA	NA	400	NM_020022	19718	Mm.332739	NM_020022	ENSMUSG00000023104	Rfc2	2610008M13Rik|40kDa|AI326953|Recc2	replication factor C (activator 1) 2	protein-coding	0.025000	0.407960	
mm_83445.1	chr9	45009522	45009722	-	1	NA	NA	NA	-32	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.030000	0.567164	
mm_30130.1	chr3	141982131	141982331	-	1	NA	NA	NA	33	NM_007560	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.030000	0.527363	
mm_135516.1	chr16	48772023	48772223	-	1	NA	NA	NA	-167	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.005000	0.363184	
mm_87449.1	chr10	51482496	51482696	+	1	NA	NA	NA	1984	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.005000	0.417910	
mm_144381.1	chr18	20666399	20666599	+	1	NA	NA	NA	1249	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.015000	0.517413	
mm_167429.1	chr8	117343183	117343383	+	1	NA	NA	NA	-5887	NM_028941	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.025000	0.497512	-24(GCTTTTAAATCG,+,0.00)
mm_1433.1	chr1	67193668	67193868	+	1	NA	NA	NA	70741	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.000000	0.457711	
mm_169575.1	chr15	22704910	22705110	-	1	NA	NA	NA	9974	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding	0.030000	0.482587	-28(CTTTAAATACCC,+,0.00)
mm_134722.1	chr16	22898108	22898308	-	1	NA	NA	NA	-3822	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.010000	0.472637	
mm_117462.1	chr13	75942196	75942396	-	1	NA	NA	NA	1528	NM_028493	73296	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	0.000000	0.238806	
mm_57222.1	chr6	123263216	123263416	-	1	NA	NA	NA	1209	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.005000	0.482587	
mm_121935.1	chr14	24004031	24004231	-	1	NA	NA	NA	74	NM_001253375	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.120000	0.711443	
mm_110312.1	chr12	33315152	33315352	-	1	NA	NA	NA	12737	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.020000	0.477612	
mm_9381.1	chr1	172211903	172212103	-	1	NA	NA	NA	-5199	NM_011063	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.015000	0.467662	-81(CCTCTTATGGAC,+,0.00)
mm_41864.1	chr5	104440614	104440814	+	1	NA	NA	NA	4522	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.005000	0.358209	
mm_139183.1	chr17	47594490	47594690	+	1	NA	NA	NA	1123	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.035000	0.552239	
mm_117132.1	chr13	60936685	60936885	-	1	NA	NA	NA	-160	NM_007796	13024	Mm.482089	NM_007796	ENSMUSG00000044258	Ctla2a	Ctla-2a	cytotoxic T lymphocyte-associated protein 2 alpha	protein-coding	0.010000	0.437811	
mm_110310.1	chr12	33147504	33147704	-	1	NA	NA	NA	-18	NR_015602	320046	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	0.130000	0.786070	
mm_75155.1	chr8	36223014	36223214	-	1	NA	NA	NA	26402	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.005000	0.338308	
mm_143825.1	chr17	83990376	83990576	-	1	NA	NA	NA	-8076	NR_130994	78148	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.015000	0.562189	
mm_148478.1	chr19	4104322	4104522	+	1	NA	NA	NA	3800	NM_008851	18739	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0.010000	0.343284	
mm_59664.1	chr7	28350651	28350851	+	1	NA	NA	NA	62	NM_013647	20055	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	0.120000	0.641791	
mm_163448.1	chr12	87373805	87374005	+	1	NA	NA	NA	14450	NM_011479	20773	Mm.565	NM_011479	ENSMUSG00000021036	Sptlc2	LCB2|LCB2a|Spt2	serine palmitoyltransferase, long chain base subunit 2	protein-coding	0.025000	0.497512	
mm_163571.1	chr13	30659866	30660066	+	1	NA	NA	NA	-93	NM_001037955	105352	Mm.289646	NM_134068	ENSMUSG00000069255	Dusp22	JKAP|JSP1|LMW-DSP2|MKPX	dual specificity phosphatase 22	protein-coding	0.180000	0.796020	
mm_77713.1	chr8	126592148	126592348	-	1	NA	NA	NA	1188	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.060000	0.597015	
mm_21391.1	chr2	157561768	157561968	-	1	NA	NA	NA	1790	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.040000	0.597015	72(GCTTTTCTGGGG,+,0.00)
mm_30078.1	chr3	138090137	138090337	-	1	NA	NA	NA	-22849	NR_037975	329763	Mm.169710	NM_177860	ENSMUSG00000049349	Gm5105	D830013H12|EG329763	predicted gene 5105	ncRNA	0.000000	0.363184	
mm_134303.1	chr16	15636639	15636839	-	1	NA	NA	NA	661	NM_008565	17217	Mm.1500	NM_008565	ENSMUSG00000022673	Mcm4	19G|AI325074|AU045576|Cdc21|Mcmd4|mKIAA4003|mcdc21	minichromosome maintenance complex component 4	protein-coding	0.050000	0.532338	
mm_115901.1	chr13	23368890	23369090	-	1	NA	NA	NA	218	NM_001286156	218100	Mm.286454	NM_172586	ENSMUSG00000046351	Zfp322a	Znf322|Znf322a	zinc finger protein 322A	protein-coding	0.110000	0.681592	
mm_103119.1	chr11	70153482	70153682	-	1	NA	NA	NA	-13041	NM_001204252	17312	Mm.252405	NM_010796	ENSMUSG00000000318	Clec10a	CD301a|M-ASGP-BP-1|Mgl|Mgl1	C-type lectin domain family 10, member A	protein-coding	0.015000	0.467662	
mm_51914.1	chr6	91233402	91233602	+	1	NA	NA	NA	20738	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.030000	0.592040	
mm_138361.1	chr17	34982519	34982719	+	1	NA	NA	NA	489	NM_030597	27756	Mm.165735	NM_030597	ENSMUSG00000007050	Lsm2	D17H6S56E-2|D17H6S56E2|Dmapl|Dmpkap|G7b|Sm-X5|SmX5|snRNP	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.020000	0.462687	
mm_117820.1	chr13	98016080	98016280	-	1	NA	NA	NA	189985	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0.040000	0.562189	
mm_36432.1	chr4	82294574	82294774	-	1	NA	NA	NA	211105	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.000000	0.417910	
mm_66947.1	chr7	61989551	61989751	-	1	NA	NA	NA	-7292	NR_037287	100526507		NR_037287	ENSMUSG00000092850	Mir344g	mir-344g|mmu-mir-344g	microRNA 344g	ncRNA	0.000000	0.263682	44(ACCTCTATAGGG,-,0.00)
mm_168229.1	chr10	80107095	80107295	+	1	NA	NA	NA	-4493	NM_183426	216161	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch homolog 2 (Drosophila)	protein-coding	0.000000	0.532338	
mm_111833.1	chr12	107911512	107911712	-	1	NA	NA	NA	91802	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.000000	0.353234	
mm_128157.1	chr15	32623405	32623605	-	1	NA	NA	NA	-297218	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0.005000	0.437811	-93(CCTTTTATGACA,+,0.00)
mm_15261.1	chr2	155018816	155019016	+	1	NA	NA	NA	5346	NM_015770	50518	Mm.315593	NM_015770	ENSMUSG00000027596	a	A<y>|ASIP|ASP|As	nonagouti	protein-coding	0.025000	0.497512	
mm_66306.1	chr7	39264355	39264555	-	1	NA	NA	NA	148705	NM_177890	330513	Mm.67238	NM_177890	ENSMUSG00000053742	Gm5114	4921507A12|EG330513	predicted gene 5114	protein-coding	0.000000	0.457711	
mm_49386.1	chr6	24791119	24791319	+	1	NA	NA	NA	31	NM_001079875	20690	Mm.4688	NM_009241	ENSMUSG00000029682	Spam1	AV039194|Ph-20	sperm adhesion molecule 1	protein-coding	0.000000	0.398010	
mm_142341.1	chr17	43591387	43591587	-	1	NA	NA	NA	22	NR_045445	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.010000	0.472637	
mm_61221.1	chr7	64439504	64439704	+	1	NA	NA	NA	46833	NM_028626	73724	Mm.10093	NM_028626	ENSMUSG00000033429	Mcee	1110007A04Rik	methylmalonyl CoA epimerase	protein-coding	0.010000	0.487562	
mm_19322.1	chr2	90568543	90568743	-	1	NA	NA	NA	12004	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.005000	0.407960	
mm_87905.1	chr10	62252241	62252441	+	1	NA	NA	NA	-97	NM_009314	21337	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0.015000	0.572139	81(GCCTTAAGAGAG,+,0.00)
mm_135612.1	chr16	52268336	52268536	-	1	NA	NA	NA	184645	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.040000	0.487562	
mm_127025.1	chr15	96287157	96287357	+	1	NA	NA	NA	-265	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.165000	0.835821	
mm_88729.1	chr10	80226659	80226859	+	1	NA	NA	NA	161	NM_023431	68114	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	0.160000	0.815920	
mm_14168.1	chr2	126673554	126673754	+	1	NA	NA	NA	1938	NM_001271469	14391	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.040000	0.417910	
mm_23325.1	chr3	53488552	53488752	+	1	NA	NA	NA	-141	NM_153156	229277	Mm.222810	NM_153156	ENSMUSG00000027744	Stoml3	Epb7.2l|SLP3|sro	stomatin (Epb7.2)-like 3	protein-coding	0.020000	0.522388	
mm_81171.1	chr9	107299926	107300126	+	1	NA	NA	NA	3367	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.025000	0.616915	
mm_25529.1	chr3	114904179	114904379	+	1	NA	NA	NA	201	NM_153458	229759	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding	0.070000	0.686567	
mm_118405.1	chr13	119409115	119409315	-	1	NA	NA	NA	42	NM_001308506	18115	Mm.132584	NM_008710	ENSMUSG00000025453	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.055000	0.631841	
mm_155912.1	chrX	101849284	101849484	+	1	NA	NA	NA	-1	NM_001163610	100042480	Mm.232	NM_001163610	ENSMUSG00000079481	Nhsl2	1110062M06Rik|6430511F03|AI225852|AW488865|EG621083|ENSMUSG00000073037|Gm10456	NHS-like 2	protein-coding	0.090000	0.711443	
mm_77629.1	chr8	124020975	124021175	-	1	NA	NA	NA	234	NM_133966	102162	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	0.200000	0.870647	
mm_49553.1	chr6	30541543	30541743	+	1	NA	NA	NA	1	NM_001024698	232680	Mm.268855	NM_001024698	ENSMUSG00000071553	Cpa2	-	carboxypeptidase A2, pancreatic	protein-coding	0.010000	0.452736	-35(CTCCCTATAAAG,-,0.00),-33(CCCTATAAAGTT,+,0.00)
mm_67352.1	chr7	79836195	79836395	-	1	NA	NA	NA	6057	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.045000	0.557214	
mm_20712.1	chr2	134634370	134634570	-	1	NA	NA	NA	9651	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding	0.000000	0.402985	
mm_124773.1	chr15	7129503	7129703	+	1	NA	NA	NA	31	NM_001113386	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.150000	0.786070	
mm_145190.1	chr18	49832554	49832754	+	1	NA	NA	NA	-343	NM_001081371	240283	Mm.257790	NM_001081371	ENSMUSG00000037416	Dmxl1	C630007L23Rik|D030030C22	Dmx-like 1	protein-coding	0.115000	0.696517	-89(GACTAGAAAAGG,-,0.00)
mm_127217.1	chr15	99392796	99392996	+	1	NA	NA	NA	-51	NM_026669	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.050000	0.592040	
mm_110006.1	chr12	16221148	16221348	-	1	NA	NA	NA	368522	NM_015763	14245	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188	lipin 1	protein-coding	0.000000	0.452736	
mm_153144.1	chr19	34248577	34248777	-	1	NA	NA	NA	6696	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.015000	0.442786	
mm_23077.1	chr3	36475846	36476046	+	1	NA	NA	NA	9	NM_028183	72282	Mm.55317	NM_028183	ENSMUSG00000027713	1810062G17Rik	-	RIKEN cDNA 1810062G17 gene	protein-coding	0.070000	0.656716	
mm_35482.1	chr4	40853933	40854133	-	1	NA	NA	NA	504	NM_022305	14595	Mm.15622	NM_022305	ENSMUSG00000028413	B4galt1	B-1,4-GalT|B-1,4-GalT1|GalT|Ggtb|Ggtb2|b4Gal-T1|beta-1,4-GalT|beta-1,4-GalT1|beta4Gal-T1	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 1	protein-coding	0.110000	0.691542	
mm_163876.1	chr14	19419372	19419572	-	1	NA	NA	NA	183115	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.328358	
mm_137132.1	chr17	23600736	23600936	+	1	NA	NA	NA	10	NM_001289482	332221	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	0.015000	0.537313	
mm_98476.1	chr11	94950389	94950589	+	1	NA	NA	NA	14265	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.065000	0.592040	
mm_153317.1	chr19	38116687	38116887	-	1	NA	NA	NA	8024	NM_011255	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.015000	0.417910	
mm_16166.1	chr2	172472461	172472661	+	1	NA	NA	NA	7	NM_029608	76426	Mm.46148	NM_029608	ENSMUSG00000027505	Fam209	1700029J11Rik	family with sequence similarity 209	protein-coding	0.025000	0.592040	
mm_73709.1	chr8	111688461	111688661	+	1	NA	NA	NA	1113	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.025000	0.597015	
mm_52975.1	chr6	123260358	123260558	+	1	NA	NA	NA	-1649	NM_001163161	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.015000	0.447761	
mm_36288.1	chr4	63987731	63987931	-	1	NA	NA	NA	59184	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding	0.015000	0.363184	
mm_148560.1	chr19	4731051	4731251	+	1	NA	NA	NA	19928	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	0.015000	0.378109	
mm_32179.1	chr4	100819197	100819397	+	1	NA	NA	NA	42618	NM_198037	320508	Mm.151962	NM_198037	ENSMUSG00000028532	Cachd1	1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573	cache domain containing 1	protein-coding	0.000000	0.492537	
mm_106057.1	chr11	116110628	116110828	-	1	NA	NA	NA	-493	NM_172570	217333	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.020000	0.472637	
mm_22289.1	chr2	180227619	180227819	-	1	NA	NA	NA	-1860	NM_001081171	16776	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0.015000	0.567164	
mm_66152.1	chr7	31148746	31148946	-	1	NA	NA	NA	2204	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.010000	0.582090	
mm_168279.1	chr1	107208848	107209048	-	1	NA	NA	NA	-47834	NM_198680	383548	Mm.483991	NM_198680	ENSMUSG00000073602	Serpinb3b	Scca2-rs|Scca2-rs1	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 3B	protein-coding	0.060000	0.651741	
mm_19212.1	chr2	84601432	84601632	-	1	NA	NA	NA	48978	NM_001085453	12388	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.010000	0.487562	
mm_63172.1	chr7	125349770	125349970	+	1	NA	NA	NA	-84	NR_045803	71208	Mm.159465	NM_172408	ENSMUSG00000045928	4933440M02Rik	-	RIKEN cDNA 4933440M02 gene	ncRNA	0.015000	0.477612	
mm_106089.1	chr11	116193450	116193650	-	1	NA	NA	NA	-5305	NM_027107	69535	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	0.000000	0.402985	
mm_87802.1	chr10	60300159	60300359	+	1	NA	NA	NA	15798	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.020000	0.532338	
mm_117325.1	chr13	67830846	67831046	-	1	NA	NA	NA	39	NR_045194	320163	Mm.444711	NR_045194	ENSMUSG00000097276	4930525G20Rik	-	RIKEN cDNA 4930525G20 gene	ncRNA	0.030000	0.522388	
mm_102046.1	chr11	52000319	52000519	-	1	NA	NA	NA	47	NM_009458	22210	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	2610301N02Rik|E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0.110000	0.696517	
mm_23240.1	chr3	51210271	51210471	+	1	NA	NA	NA	-14076	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.000000	0.492537	89(TCCTTTATAAGA,-,0.00)
mm_113477.1	chr13	36734762	36734962	+	1	NA	NA	NA	-385	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.050000	0.676617	
mm_52417.1	chr6	113434799	113434999	+	1	NA	NA	NA	856	NM_178373	14311	Mm.10026	NM_178373	ENSMUSG00000030278	Cidec	CIDE-3|Fsp27	cell death-inducing DFFA-like effector c	protein-coding	0.025000	0.587065	
mm_132749.1	chr16	44159657	44159857	+	1	NA	NA	NA	-13640	NM_001029889	207806	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.005000	0.363184	
mm_97076.1	chr11	73009011	73009211	+	1	NA	NA	NA	-9897	NM_018883	55984	Mm.9998	NM_018883	ENSMUSG00000020785	Camkk1	AI846603|CaMKKalpha|Camkk	calcium/calmodulin-dependent protein kinase kinase 1, alpha	protein-coding	0.010000	0.597015	
mm_33619.1	chr4	132656594	132656794	+	1	NA	NA	NA	17648	NM_010166	14050	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0.020000	0.422886	-49(CAGTTTATAAGC,-,0.00),-39(GCATATAAAGCT,+,0.00)
mm_156758.1	chrX	160502352	160502552	+	1	NA	NA	NA	18	NM_001177878	110094	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	0.045000	0.616915	-71(CCCTTTAGGCGG,+,0.00),-25(GCCTAGTAAAGC,-,0.00)
mm_79271.1	chr9	50754132	50754332	+	1	NA	NA	NA	1261	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.010000	0.502488	
mm_59793.1	chr7	29000703	29000903	+	1	NA	NA	NA	17949	NM_008279	26411	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.020000	0.537313	
mm_135739.1	chr16	55838685	55838885	-	1	NA	NA	NA	-144	NM_001159395	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.060000	0.601990	
mm_29490.1	chr3	115801064	115801264	-	1	NA	NA	NA	-86109	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.010000	0.432836	68(GTGCTTAAAAGA,-,0.00)
mm_84603.1	chr9	70102993	70103193	-	1	NA	NA	NA	38464	NM_029784	76886	Mm.44355	NM_029784	ENSMUSG00000032224	Fam81a	6430514L14Rik	family with sequence similarity 81, member A	protein-coding	0.020000	0.527363	
mm_78443.1	chr9	32159454	32159654	+	1	NA	NA	NA	43418	NM_001195632	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.000000	0.373134	
mm_158081.1	chrX	101265570	101265770	-	1	NA	NA	NA	-1678	NM_001317221	245536	Mm.212463	NM_001033362	ENSMUSG00000090141	Gm614	-	predicted gene 614	protein-coding	0.005000	0.447761	
mm_92270.1	chr10	71159592	71159792	-	1	NA	NA	NA	-2	NM_001347189	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	BicC family RNA binding protein 1	protein-coding	0.190000	0.850746	
mm_38952.1	chr4	150569970	150570170	-	1	NA	NA	NA	82104	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.040000	0.592040	
mm_147725.1	chr18	60877233	60877433	-	1	NA	NA	NA	-28369	NM_001198984	21453	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0.015000	0.502488	
mm_130219.1	chr15	95887421	95887621	-	1	NA	NA	NA	96678	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.020000	0.517413	88(GTTTTTAGAGTG,+,0.00)
mm_134165.1	chr16	10795952	10796152	-	1	NA	NA	NA	771	NM_013637	19118	Mm.42733	NM_013637	ENSMUSG00000022501	Prm1	Prm-1	protamine 1	protein-coding	0.000000	0.497512	
mm_77662.1	chr8	124663297	124663497	-	1	NA	NA	NA	-28	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding	0.080000	0.696517	
mm_108895.1	chr12	100156429	100156629	+	1	NA	NA	NA	3124	NM_001290303	217827	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0.005000	0.447761	
mm_54096.1	chr6	16837001	16837201	-	1	NA	NA	NA	61340	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.005000	0.303483	
mm_33282.1	chr4	128744958	128745158	+	1	NA	NA	NA	-14200	NM_001009819	215493	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	0.025000	0.557214	
mm_73093.1	chr8	94544079	94544279	+	1	NA	NA	NA	11151	NM_153507	234577	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0.030000	0.626866	
mm_70546.1	chr8	13055738	13055938	+	1	NA	NA	NA	-5070	NM_025834	66901	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.015000	0.547264	
mm_50318.1	chr6	47943078	47943278	+	1	NA	NA	NA	3	NR_027963	232785	Mm.482185	NR_027963	ENSMUSG00000072653	Zfp783	A230106D06Rik|ENSMUSG00000072653|Gm20494	zinc finger protein 783	ncRNA	0.120000	0.766169	
mm_3640.1	chr1	152812411	152812611	+	1	NA	NA	NA	12358	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.010000	0.422886	
mm_109824.1	chr12	3862211	3862411	-	1	NA	NA	NA	-67	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.005000	0.542289	
mm_99319.1	chr11	101442326	101442526	+	1	NA	NA	NA	181	NM_011289	19942	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	0.060000	0.641791	
mm_35468.1	chr4	40805755	40805955	-	1	NA	NA	NA	44283	NR_039584	100628614		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.015000	0.487562	
mm_72984.1	chr8	92960478	92960678	+	1	NA	NA	NA	-469	NM_009209	20538	Mm.57040	NM_009209	ENSMUSG00000055368	Slc6a2	NE-T|NET|Slc6a5	solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	protein-coding	0.095000	0.706468	
mm_119215.1	chr14	33203870	33204070	+	1	NA	NA	NA	-12853	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.040000	0.502488	-34(GAATATAAAAAG,-,0.00),14(CCTTATAGAGCT,+,0.00)
mm_145880.1	chr18	65476799	65476999	+	1	NA	NA	NA	45902	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.353234	
mm_79579.1	chr9	58134922	58135122	+	1	NA	NA	NA	357	NM_001162479	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.005000	0.422886	-7(TTCCTTTTAAGC,-,0.00),-5(CCTTTTAAGCCT,+,0.00)
mm_131317.1	chr16	11778357	11778557	+	1	NA	NA	NA	-1245	NR_126430	73761	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.010000	0.492537	
mm_141334.1	chr17	28507422	28507622	-	1	NA	NA	NA	-21373	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.005000	0.587065	
mm_81489.1	chr9	110003540	110003740	+	1	NA	NA	NA	-48381	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.000000	0.343284	
mm_172016.1	chr6	111513868	111514068	+	1	NA	NA	NA	-696740	NR_027865	67336	Mm.378014	NR_027865	ENSMUSG00000100219	1700054K19Rik	-	RIKEN cDNA 1700054K19 gene	ncRNA	0.015000	0.482587	
mm_6491.1	chr1	74150574	74150774	-	1	NA	NA	NA	-3320	NM_009909	12765	Mm.234466	NM_009909	ENSMUSG00000026180	Cxcr2	CD128|CDw128|Cmkar2|Gpcr16|IL-8Rh|IL-8rb|IL8RA|Il8rb|mIL-8RH	chemokine (C-X-C motif) receptor 2	protein-coding	0.015000	0.472637	
mm_85786.1	chr9	109071616	109071816	-	1	NA	NA	NA	2408	NM_172774	235610	Mm.100622	NM_172774	ENSMUSG00000025646	Atrip	6620401K05Rik	ATR interacting protein	protein-coding	0.015000	0.467662	
mm_57094.1	chr6	122587810	122588010	-	1	NA	NA	NA	14534	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.000000	0.258706	
mm_103446.1	chr11	76154873	76155073	-	1	NA	NA	NA	24657	NM_026664	68299	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	0.010000	0.517413	
mm_2619.1	chr1	120495365	120495565	+	1	NA	NA	NA	9619	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.000000	0.492537	
mm_12165.1	chr2	62395092	62395292	+	1	NA	NA	NA	17039	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.000000	0.462687	
mm_166908.1	chr7	28962423	28962623	+	1	NA	NA	NA	-243	NM_021895	60595	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.065000	0.562189	
mm_123563.1	chr14	66868943	66869143	-	1	NA	NA	NA	193	NM_001034881	432870	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	0.145000	0.761194	
mm_21637.1	chr2	164317468	164317668	-	1	NA	NA	NA	817	NM_013679	20945	Mm.439686	NM_013679	ENSMUSG00000017000	Svs6	MSVSP99|Svp6	seminal vesicle secretory protein 6	protein-coding	0.015000	0.417910	
mm_165533.1	chr2	180104313	180104513	-	1	NA	NA	NA	-6	NM_133849	99296	Mm.285360	NM_133849	ENSMUSG00000039059	Hrh3	AW049250|H3R|HH3R	histamine receptor H3	protein-coding	0.130000	0.746269	
mm_8079.1	chr1	135585432	135585632	-	1	NA	NA	NA	-177	NM_173437	215690	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.065000	0.552239	
mm_105098.1	chr11	100939371	100939571	-	1	NA	NA	NA	69	NM_213660	20848	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.060000	0.626866	
mm_102300.1	chr11	55469065	55469265	-	1	NA	NA	NA	-587	NM_013716	27041	Mm.39631	NM_013716	ENSMUSG00000018583	G3bp1	AI849976|B430204O07|C87777|G3bp|mKIAA4115	GTPase activating protein (SH3 domain) binding protein 1	protein-coding	0.055000	0.587065	
mm_106322.1	chr11	118303548	118303748	-	1	NA	NA	NA	-13404	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.025000	0.522388	
mm_26076.1	chr3	136670365	136670565	+	1	NA	NA	NA	399	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.115000	0.706468	
mm_120690.1	chr14	70774506	70774706	+	1	NA	NA	NA	225	NM_010071	13449	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip	docking protein 2	protein-coding	0.025000	0.542289	
mm_92415.1	chr10	76822725	76822925	-	1	NA	NA	NA	-96781	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.025000	0.497512	
mm_74622.1	chr8	13104875	13105075	-	1	NA	NA	NA	368	NM_178708	234069	Mm.103427	NM_178708	ENSMUSG00000038542	Pcid2	A730042J05Rik	PCI domain containing 2	protein-coding	0.130000	0.701493	
mm_111768.1	chr12	104013684	104013884	-	1	NA	NA	NA	-132	NM_027997	71907	Mm.326723	NM_027997	ENSMUSG00000058260	Serpina9	2310014L03Rik|AW049635|Centerin	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9	protein-coding	0.010000	0.527363	60(CCCCATTAAGGG,-,0.00)
mm_35964.1	chr4	53143931	53144131	-	1	NA	NA	NA	15864	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.035000	0.547264	
mm_86277.1	chr9	121809718	121809918	-	1	NA	NA	NA	-17311	NM_029095	74770	Mm.44195	NM_029095	ENSMUSG00000032523	Hhatl	1110011D13Rik|Gup1|Mg56	hedgehog acyltransferase-like	protein-coding	0.015000	0.462687	-4(GGCCTTAAAATG,-,0.00)
mm_74466.1	chr8	4217116	4217316	-	1	NA	NA	NA	96	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.075000	0.696517	
mm_43637.1	chr5	138229716	138229916	+	1	NA	NA	NA	3912	NM_001013773	381680	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0.005000	0.383085	
mm_70637.1	chr8	13896371	13896571	+	1	NA	NA	NA	-6200	NM_025556	66423	Mm.29063	NM_025556	ENSMUSG00000031458	Coprs	1700029I03Rik|2410022L05Rik|AA409325|AI256813|C85432|Copr5	coordinator of PRMT5, differentiation stimulator	protein-coding	0.025000	0.552239	
mm_117063.1	chr13	58668661	58668861	-	1	NA	NA	NA	-57884	NM_022317	114304	Mm.18188	NM_022317	ENSMUSG00000021553	Slc28a3	Cnt3	solute carrier family 28 (sodium-coupled nucleoside transporter), member 3	protein-coding	0.055000	0.641791	
mm_147947.1	chr18	66471418	66471618	-	1	NA	NA	NA	12914	NM_021451	58801	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.030000	0.442786	
mm_103880.1	chr11	83530390	83530590	-	1	NA	NA	NA	28	NM_013653	20304	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.020000	0.631841	-63(CCCTATAAAAGG,-,0.00)
mm_21848.1	chr2	165858060	165858260	-	1	NA	NA	NA	13	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.045000	0.601990	
mm_36842.1	chr4	106678567	106678767	-	1	NA	NA	NA	19	NM_001172073	72354	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	0.050000	0.582090	
mm_172259.1	chr6	73454344	73454544	-	1	NA	NA	NA	15223	NM_025737	66740	Mm.440760	NM_025737	ENSMUSG00000056197	4931417E11Rik	-	RIKEN cDNA 4931417E11 gene	protein-coding	0.030000	0.452736	
mm_44766.1	chr5	31698151	31698351	-	1	NA	NA	NA	201	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.050000	0.552239	
mm_138573.1	chr17	35424749	35424949	+	1	NA	NA	NA	2	NM_023124	15019	Mm.486287	NM_023124		H2-Q8	H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8	histocompatibility 2, Q region locus 8	protein-coding	0.085000	0.621891	
mm_45055.1	chr5	41809992	41810192	-	1	NA	NA	NA	34223	NM_001310601	665775	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0.000000	0.353234	
mm_96582.1	chr11	69073327	69073527	+	1	NA	NA	NA	2618	NM_028336	66910	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	0.020000	0.437811	-54(CCTTTAATAGGA,+,0.00),-7(CCTTTTATCGTC,+,0.00)
mm_26214.1	chr3	138758030	138758230	+	1	NA	NA	NA	15922	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.005000	0.447761	
mm_48668.1	chr5	145997054	145997254	-	1	NA	NA	NA	12463	NM_019792	56388	Mm.301900	NM_019792	ENSMUSG00000029630	Cyp3a25	AI327008	cytochrome P450, family 3, subfamily a, polypeptide 25	protein-coding	0.000000	0.358209	
mm_81312.1	chr9	108392813	108393013	+	1	NA	NA	NA	79	NM_053216	112418	Mm.78287	NM_053216	ENSMUSG00000032611	1700102P08Rik	AI593206	RIKEN cDNA 1700102P08 gene	protein-coding	0.060000	0.651741	
mm_69151.1	chr7	127137279	127137479	-	1	NA	NA	NA	444	NR_110337	20737	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	0.020000	0.587065	
mm_66088.1	chr7	30972083	30972283	-	1	NA	NA	NA	1286	NM_001164185	54135	Mm.4067	NM_017405	ENSMUSG00000001247	Lsr	ILDR3|Lisch7	lipolysis stimulated lipoprotein receptor	protein-coding	0.020000	0.537313	
mm_130277.1	chr15	96699608	96699808	-	1	NA	NA	NA	-10	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.135000	0.626866	
mm_137335.1	chr17	25120695	25120895	+	1	NA	NA	NA	35	NM_001163416	68509	Mm.328855	NM_026747	ENSMUSG00000044172	Ptx4	1110018H23Rik	pentraxin 4	protein-coding	0.010000	0.502488	
mm_50410.1	chr6	48738968	48739168	+	1	NA	NA	NA	21	NM_008376	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.025000	0.542289	-90(GTCTCTTTAAGC,-,0.00)
mm_136714.1	chr17	7929286	7929486	+	1	NA	NA	NA	3386	NM_145968	72536	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik	T cell activation Rho GTPase activating protein	protein-coding	0.025000	0.547264	-85(CTGCCTTAAAGG,-,0.00),-83(GCCTTAAAGGTC,+,0.00)
mm_37562.1	chr4	126201058	126201258	-	1	NA	NA	NA	1552	NM_146153	230753	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0.015000	0.407960	
mm_105666.1	chr11	107419783	107419983	-	1	NA	NA	NA	50837	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.035000	0.432836	
mm_166037.1	chr4	129189371	129189571	-	1	NA	NA	NA	11	NM_029036	74648	Mm.172064	NM_029036	ENSMUSG00000040928	S100pbp	4930429A08Rik|AI851343|S100pbpr	S100P binding protein	protein-coding	0.110000	0.701493	
mm_81186.1	chr9	107533983	107534183	+	1	NA	NA	NA	138	NM_019704	56395	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	0.110000	0.691542	
mm_77672.1	chr8	124897621	124897821	-	1	NA	NA	NA	-16	NM_198103	102058	Mm.347360	NM_198103	ENSMUSG00000074030	Exoc8	AI414418|EXO84|Exo84p|R74783|SEC84	exocyst complex component 8	protein-coding	0.130000	0.736318	
mm_172552.1	chr8	102784962	102785162	-	1	NA	NA	NA	49	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.130000	0.756219	
mm_75311.1	chr8	41209753	41209953	-	1	NA	NA	NA	5303	NM_145594	234199	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding	0.015000	0.502488	
mm_10967.1	chr2	25702444	25702644	+	1	NA	NA	NA	2470	NM_153558	227627	Mm.44630	NM_153558	ENSMUSG00000062061	Obp2a	BC027556|Lcn13	odorant binding protein 2A	protein-coding	0.000000	0.527363	
mm_51955.1	chr6	91756050	91756250	+	1	NA	NA	NA	51243	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.005000	0.547264	
mm_117407.1	chr13	73937674	73937874	-	1	NA	NA	NA	-7	NM_027182	69716	Mm.275095	NM_027182	ENSMUSG00000021569	Trip13	2410002G23Rik|D13Ertd328e	thyroid hormone receptor interactor 13	protein-coding	0.130000	0.706468	
mm_122577.1	chr14	50829957	50830157	-	1	NA	NA	NA	22111	NM_009632	11546	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0.005000	0.512438	
mm_173250.1	chrX	92662838	92663038	-	1	NA	NA	NA	-63366	NM_173783	215641	Mm.327999	NM_173783	ENSMUSG00000067649	Mageb18	B430216B18Rik	melanoma antigen family B, 18	protein-coding	0.015000	0.452736	-32(CCCCTTATAAGC,-,0.00),-30(CCTTATAAGCAC,+,0.00)
mm_133738.1	chr16	93929264	93929464	+	1	NA	NA	NA	203	NM_001165925	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.025000	0.572139	
mm_51009.1	chr6	64734601	64734801	+	1	NA	NA	NA	5555	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal bHLH transcription factor 1	protein-coding	0.085000	0.701493	
mm_166011.1	chr4	118409289	118409489	+	1	NA	NA	NA	52	NM_020000	80509	Mm.259567	NM_020000	ENSMUSG00000006392	Med8	2210021A15Rik|AB041805|ARC32	mediator complex subunit 8	protein-coding	0.080000	0.636816	
mm_63323.1	chr7	126941967	126942167	+	1	NA	NA	NA	7514	NM_001347657	233879	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0.010000	0.562189	
mm_138933.1	chr17	43803931	43804131	+	1	NA	NA	NA	28	NM_001286653	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.010000	0.497512	
mm_148187.1	chr18	78867770	78867970	-	1	NA	NA	NA	241521	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.000000	0.238806	
mm_49550.1	chr6	30512207	30512407	+	1	NA	NA	NA	21	NM_029373	75647	Mm.46117	NM_027073	ENSMUSG00000029784	Ssmem1	1700016K02Rik|1700025E21Rik	serine-rich single-pass membrane protein 1	protein-coding	0.015000	0.447761	
mm_140948.1	chr17	24527802	24528002	-	1	NA	NA	NA	36	NM_153792	224619	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	0.070000	0.567164	
mm_72353.1	chr8	79711665	79711865	+	1	NA	NA	NA	-25	NM_015751	24015	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	0.110000	0.631841	
mm_72341.1	chr8	79458775	79458975	+	1	NA	NA	NA	-59407	NM_008539	17125	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.000000	0.328358	
mm_158375.1	chrX	135210551	135210751	-	1	NA	NA	NA	36	NM_025355	66104	Mm.336239	NM_025355	ENSMUSG00000031409	Tceal6	1500026B10Rik	transcription elongation factor A (SII)-like 6	protein-coding	0.045000	0.606965	
mm_61474.1	chr7	75612441	75612641	+	1	NA	NA	NA	157007	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.010000	0.363184	
mm_9394.1	chr1	172219430	172219630	-	1	NA	NA	NA	365	NM_009813	12372	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.045000	0.547264	
mm_157997.1	chrX	94540338	94540538	-	1	NA	NA	NA	1636	NM_019791	94275	Mm.27578	NM_019791	ENSMUSG00000025151	Maged1	2810433C11Rik|5430405L04Rik|DXBwg1492e|Dlixin|Dlxin-1|Dlxin1|MAGE-D1|NRAGE|mFLJ00163	melanoma antigen, family D, 1	protein-coding	0.015000	0.582090	
mm_114738.1	chr13	83732469	83732669	+	1	NA	NA	NA	4463	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.030000	0.447761	
mm_35494.1	chr4	41033571	41033771	-	1	NA	NA	NA	14465	NM_007473	11832	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	0.000000	0.388060	
mm_99188.1	chr11	100884282	100884482	+	1	NA	NA	NA	23898	NM_001164062	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.025000	0.507463	13(CCCTTTATACCT,+,0.00)
mm_92386.1	chr10	76595832	76596032	-	1	NA	NA	NA	20284	NM_080845	14317	Mm.36278	NM_080845	ENSMUSG00000001155	Ftcd	-	formiminotransferase cyclodeaminase	protein-coding	0.000000	0.557214	
mm_147413.1	chr18	45895488	45895688	-	1	NA	NA	NA	149672	NR_040342	107003	Mm.395148	NR_040342		A330093E20Rik	AU043608	RIKEN cDNA A330093E20 gene	ncRNA	0.005000	0.353234	
mm_68570.1	chr7	115722640	115722840	-	1	NA	NA	NA	78869	NM_001277328	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.005000	0.338308	75(CTGTTTAAAAGA,-,0.00)
mm_126177.1	chr15	78597043	78597243	+	1	NA	NA	NA	96	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.020000	0.641791	
mm_168190.1	chr10	62602216	62602416	-	1	NA	NA	NA	-18	NM_019553	56200	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0.105000	0.651741	
mm_63855.1	chr7	135667437	135667637	+	1	NA	NA	NA	-15223	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.025000	0.522388	
mm_85984.1	chr9	112185686	112185886	-	1	NA	NA	NA	163	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.015000	0.427861	9(CCTTTTAGGGTC,+,0.00),16(GGGTCTAAAAAC,-,0.00)
mm_109911.1	chr12	8480104	8480304	-	1	NA	NA	NA	19781	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.030000	0.557214	
mm_45561.1	chr5	73191830	73192030	-	1	NA	NA	NA	64688	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.025000	0.492537	
mm_89225.1	chr10	87205924	87206124	+	1	NA	NA	NA	147978	NM_029685	76640	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding	0.005000	0.497512	
mm_88633.1	chr10	79887821	79888021	+	1	NA	NA	NA	1609	NM_015779	50701	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0.025000	0.582090	
mm_158685.1	chrX	160735653	160735853	-	1	NA	NA	NA	-15781	NM_011147	237178	Mm.296779	NM_011147	ENSMUSG00000062168	Ppef1	PPEF-1	protein phosphatase with EF hand calcium-binding domain 1	protein-coding	0.025000	0.497512	
mm_137038.1	chr17	17890647	17890847	+	1	NA	NA	NA	2923	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.000000	0.338308	
mm_25116.1	chr3	101667513	101667713	+	1	NA	NA	NA	-62906	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.015000	0.532338	
mm_37453.1	chr4	123411885	123412085	-	1	NA	NA	NA	-74	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.100000	0.761194	-57(CCCTATAGGCCC,+,0.00)
mm_69854.1	chr7	141429344	141429544	-	1	NA	NA	NA	-24	NM_021316	57754	Mm.87027	NM_021316	ENSMUSG00000060240	Cend1	1500001H12Rik|AI415214|BM88	cell cycle exit and neuronal differentiation 1	protein-coding	0.065000	0.636816	
mm_103370.1	chr11	75195214	75195414	-	1	NA	NA	NA	1321	NM_177708	237847	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0.055000	0.651741	
mm_123031.1	chr14	55524823	55525023	-	1	NA	NA	NA	58	NM_001271916	18185	Mm.20422	NM_008736	ENSMUSG00000040632	Nrl	D14H14S46E	neural retina leucine zipper gene	protein-coding	0.030000	0.522388	
mm_125115.1	chr15	28203705	28203905	+	1	NA	NA	NA	39	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.035000	0.502488	66(CCTCTTAGAGTC,+,0.00)
mm_51212.1	chr6	71352843	71353043	+	1	NA	NA	NA	-20484	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.010000	0.492537	48(CTTTCTAAAAGC,-,0.00)
mm_135176.1	chr16	35938963	35939163	-	1	NA	NA	NA	-36	NM_001013371	209200	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0.075000	0.597015	
mm_10151.1	chr2	4300685	4300885	+	1	NA	NA	NA	-100191	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.015000	0.482587	
mm_72142.1	chr8	72135187	72135387	+	1	NA	NA	NA	-5	NM_001001491	326618	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	0.085000	0.741294	
mm_88137.1	chr10	69398864	69399064	+	1	NA	NA	NA	-46052	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.115000	0.721393	
mm_140527.1	chr17	6743742	6743942	-	1	NA	NA	NA	38012	NM_183368	83672	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0.020000	0.542289	
mm_60598.1	chr7	44516834	44517034	+	1	NA	NA	NA	7735	NM_146189	233199	Mm.358888	NM_146189	ENSMUSG00000038670	Mybpc2	-	myosin binding protein C, fast-type	protein-coding	0.035000	0.527363	
mm_61926.1	chr7	90162968	90163168	+	1	NA	NA	NA	32836	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.005000	0.328358	
mm_108478.1	chr12	83659422	83659622	+	1	NA	NA	NA	27288	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.020000	0.432836	
mm_100698.1	chr11	3531466	3531666	-	1	NA	NA	NA	7726	NM_013870	29856	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.020000	0.587065	
mm_89034.1	chr10	82771231	82771431	+	1	NA	NA	NA	-7190	NM_010914	18045	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	0.025000	0.547264	
mm_27175.1	chr3	34078945	34079145	-	1	NA	NA	NA	2309	NM_001286972	67713	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.015000	0.422886	
mm_2905.1	chr1	131970495	131970695	+	1	NA	NA	NA	-14	NM_145977	212980	Mm.200307	NM_145977	ENSMUSG00000026435	Slc45a3	2210413P12Rik|AU023994|AU043764|IPCA-6|PRST|Pcanap6	solute carrier family 45, member 3	protein-coding	0.010000	0.547264	-47(ACCCCTAAAAGC,-,0.00)
mm_139247.1	chr17	47734143	47734343	+	1	NA	NA	NA	-2794	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.015000	0.537313	
mm_73561.1	chr8	109493904	109494104	+	1	NA	NA	NA	-23	NM_019938	56523	Mm.42166	NM_019938	ENSMUSG00000031727	Pmfbp1	1700016D22Rik|F77|Stap	polyamine modulated factor 1 binding protein 1	protein-coding	0.000000	0.407960	
mm_100455.1	chr11	119729437	119729637	+	1	NA	NA	NA	104828	NR_045313	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	0.015000	0.457711	12(GGCCTTTAAGAG,-,0.00),13(GCCTTTAAGAGA,-,0.00),14(CCTTTAAGAGAA,+,0.00)
mm_1900.1	chr1	85779976	85780176	+	1	NA	NA	NA	4805	NR_108086	77762	Mm.434298	NR_108086	ENSMUSG00000100217	9930111H07Rik	-	RIKEN cDNA 9930111H07 gene	ncRNA	0.005000	0.507463	
mm_148776.1	chr19	6106792	6106992	+	1	NA	NA	NA	1094	NM_001009546	381204	Mm.359041	NM_001009546	ENSMUSG00000054999	Naaladl1	Gm964|Naaladasel	N-acetylated alpha-linked acidic dipeptidase-like 1	protein-coding	0.035000	0.567164	
mm_133476.1	chr16	89511882	89512082	+	1	NA	NA	NA	-3659	NM_027771	71363	Mm.158680	NM_027771	ENSMUSG00000056706	Krtap7-1	5430433J05Rik	keratin associated protein 7-1	protein-coding	0.030000	0.467662	-47(ACCTCTAAAAGG,-,0.00),-46(CCTCTAAAAGGG,+,0.00),-32(GCTTATAAAGCG,+,0.00),74(TGCTTTTTAAAG,-,0.00),76(CTTTTTAAAGAC,+,0.00)
mm_121002.1	chr14	79515556	79515756	+	1	NA	NA	NA	-18	NM_001286412	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.015000	0.457711	
mm_113514.1	chr13	37778427	37778627	+	1	NA	NA	NA	-47511	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.075000	0.691542	
mm_115286.1	chr13	111867912	111868112	+	1	NA	NA	NA	76	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.040000	0.537313	
mm_1908.1	chr1	85903006	85903206	+	1	NA	NA	NA	8596	NM_022417	64294	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.045000	0.616915	
mm_23239.1	chr3	51210255	51210455	+	1	NA	NA	NA	-14092	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.000000	0.502488	
mm_83402.1	chr9	44735128	44735328	-	1	NA	NA	NA	-30	NM_153537	102693	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.055000	0.681592	
mm_17548.1	chr2	29914739	29914939	-	1	NA	NA	NA	-20570	NM_028923	74412	Mm.275121	NM_028923	ENSMUSG00000019715	Gle1	4933405K21Rik|AA553313|Gle1l	GLE1 RNA export mediator (yeast)	protein-coding	0.040000	0.572139	
mm_22917.1	chr3	31094843	31095043	+	1	NA	NA	NA	-115	NM_011386	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.160000	0.800995	
mm_96728.1	chr11	69684398	69684598	+	1	NA	NA	NA	1056	NM_001159505	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.005000	0.522388	
mm_143675.1	chr17	80006167	80006367	-	1	NA	NA	NA	56001	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.005000	0.507463	-33(TCCTATAAAAAG,-,0.00)
mm_37571.1	chr4	126242086	126242286	-	1	NA	NA	NA	14133	NM_144941	245877	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0.015000	0.631841	
mm_42200.1	chr5	112309742	112309942	+	1	NA	NA	NA	-16527	NM_018783	54723	Mm.172947	NM_018783	ENSMUSG00000029345	Tfip11	2810002G02Rik|AF097181|AW046167|Srr1|TIP33|Tip39	tuftelin interacting protein 11	protein-coding	0.040000	0.582090	
mm_59999.1	chr7	30589687	30589887	+	1	NA	NA	NA	407	NR_106134	102465774		NR_106134	ENSMUSG00000098553	Mir3569	Gm27279|mmu-mir-3569	microRNA 3569	ncRNA	0.045000	0.502488	
mm_65472.1	chr7	25477500	25477700	-	1	NA	NA	NA	25	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.005000	0.572139	
mm_141867.1	chr17	34810477	34810677	-	1	NA	NA	NA	-6151	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.010000	0.606965	
mm_13206.1	chr2	93642173	93642373	+	1	NA	NA	NA	-161	NM_007442	11695	Mm.389389	NM_007442	ENSMUSG00000040310	Alx4	lst	aristaless-like homeobox 4	protein-coding	0.025000	0.517413	
mm_129119.1	chr15	76091563	76091763	-	1	NA	NA	NA	-1650	NM_144847	223649	Mm.101946	NM_144847	ENSMUSG00000075590	Nrbp2	BC011468	nuclear receptor binding protein 2	protein-coding	0.110000	0.761194	
mm_65470.1	chr7	25476599	25476799	-	1	NA	NA	NA	926	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.005000	0.517413	
mm_44278.1	chr5	5783360	5783560	-	1	NA	NA	NA	-34143	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.020000	0.507463	
mm_166219.1	chr5	64264198	64264398	+	1	NA	NA	NA	33941	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.050000	0.552239	
mm_105197.1	chr11	102088447	102088647	-	1	NA	NA	NA	-32	NM_016695	50997	Mm.36242	NM_016695	ENSMUSG00000017314	Mpp2	D11Bwg0652e|Dlg2|Dlgh2|Pals4	membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	protein-coding	0.095000	0.626866	34(CGCTTTAAGAGC,-,0.00),35(GCTTTAAGAGCG,+,0.00)
mm_97213.1	chr11	75630665	75630865	+	1	NA	NA	NA	-255	NM_008916	19062	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.130000	0.706468	
mm_171834.1	chr5	148176723	148176923	+	1	NA	NA	NA	215992	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.030000	0.497512	-26(CTTTAAATACCC,+,0.00)
mm_24422.1	chr3	90527646	90527846	+	1	NA	NA	NA	897	NM_001163526	66166	Mm.24006	NM_025393	ENSMUSG00000042306	S100a14	1110013O05Rik|S100a15|S114	S100 calcium binding protein A14	protein-coding	0.010000	0.517413	
mm_73518.1	chr8	107457684	107457884	+	1	NA	NA	NA	21386	NM_025830	66894	Mm.390058	NM_025830	ENSMUSG00000031930	Wwp2	1300010O06Rik|AA690238|AIP2|AW554328	WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.015000	0.487562	
mm_66852.1	chr7	51772659	51772859	-	1	NA	NA	NA	-89256	NM_001330608	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.010000	0.487562	
mm_60110.1	chr7	35449024	35449224	+	1	NA	NA	NA	26	NM_001199016	30962	Mm.45874	NM_021291	ENSMUSG00000030492	Slc7a9	CSNU3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	protein-coding	0.020000	0.557214	
mm_26577.1	chr3	146899085	146899285	+	1	NA	NA	NA	46818	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.000000	0.507463	
mm_74774.1	chr8	21756751	21756951	-	1	NA	NA	NA	-19704	NM_007843	13214	Mm.431316	NM_007843	ENSMUSG00000044748	Defb1	AW260221|BD-1	defensin beta 1	protein-coding	0.010000	0.412935	
mm_58260.1	chr6	145250118	145250318	-	1	NA	NA	NA	13	NM_021284	16653	Mm.383182	NM_021284	ENSMUSG00000030265	Kras	AI929937|K-Ras|K-Ras 2|K-ras|Ki-ras|Kras-2|Kras2|c-K-ras|c-Ki-ras|p21B|ras	Kirsten rat sarcoma viral oncogene homolog	protein-coding	0.180000	0.796020	
mm_168928.1	chr12	63692254	63692454	+	1	NA	NA	NA	782544	NM_001163271	623046	Mm.189552	NM_001163271	ENSMUSG00000043060	Fscb	EG623046	fibrous sheath CABYR binding protein	protein-coding	0.005000	0.492537	
mm_23928.1	chr3	83766534	83766734	+	1	NA	NA	NA	313	NM_009144	20319	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0.080000	0.671642	
mm_43938.1	chr5	145123488	145123688	+	1	NA	NA	NA	9332	NM_023142	11867	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.055000	0.597015	
mm_71326.1	chr8	44951266	44951466	+	1	NA	NA	NA	1158	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.020000	0.442786	51(GTTTTTAAAAGC,+,0.00),51(GTTTTTAAAAGC,-,0.00),52(TTTTTAAAAGCG,+,0.00)
mm_3044.1	chr1	134040303	134040503	+	1	NA	NA	NA	2888	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.020000	0.572139	
mm_62033.1	chr7	92062309	92062509	+	1	NA	NA	NA	15	NM_001243046	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.432836	
mm_95171.1	chr11	40733842	40734042	+	1	NA	NA	NA	281	NM_001290697	52653	Mm.276504	NM_026023	ENSMUSG00000020328	Nudcd2	-	NudC domain containing 2	protein-coding	0.085000	0.661692	
mm_33438.1	chr4	130108306	130108506	+	1	NA	NA	NA	850	NM_026441	67898	Mm.20818	NM_026441	ENSMUSG00000028779	Pef1	2600002E23Rik|Peflin	penta-EF hand domain containing 1	protein-coding	0.010000	0.373134	
mm_22181.1	chr2	173216902	173217102	-	1	NA	NA	NA	1920	NM_021394	58203	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.025000	0.547264	
mm_97548.1	chr11	78927307	78927507	+	1	NA	NA	NA	2116	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.005000	0.422886	
mm_102322.1	chr11	57507032	57507232	-	1	NA	NA	NA	11512	NM_001168667	67726	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	0.010000	0.507463	
mm_47470.1	chr5	123684234	123684434	-	1	NA	NA	NA	27	NM_019765	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.170000	0.810945	
mm_48610.1	chr5	144357973	144358173	-	1	NA	NA	NA	39	NM_025833	66898	Mm.18814	NM_025833	ENSMUSG00000038859	Baiap2l1	1300006M19Rik|AI585895|IRTKS	BAI1-associated protein 2-like 1	protein-coding	0.080000	0.676617	
mm_111069.1	chr12	80116830	80117030	-	1	NA	NA	NA	-3917	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.025000	0.492537	
mm_168200.1	chr10	66582705	66582905	+	1	NA	NA	NA	337579	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.060000	0.646766	
mm_6227.1	chr1	66937372	66937572	-	1	NA	NA	NA	-2106	NM_001113387	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.010000	0.393035	
mm_73149.1	chr8	94992829	94993029	+	1	NA	NA	NA	8530	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.015000	0.572139	
mm_6930.1	chr1	84934999	84935199	-	1	NA	NA	NA	-16	NM_027921	71781	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.070000	0.587065	-34(CCCTTTTTAAAG,-,0.00),-33(CCTTTTTAAAGG,-,0.00),-32(CTTTTTAAAGGC,+,0.00)
mm_164559.1	chr17	15577395	15577595	-	1	NA	NA	NA	-14172	NM_144809	213389	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	0.135000	0.726368	
mm_50323.1	chr6	48289122	48289322	+	1	NA	NA	NA	-106364	NM_001347152	77827	Mm.107646	NM_133922	ENSMUSG00000042810	Krba1	A930040G15Rik|AI448780	KRAB-A domain containing 1	protein-coding	0.030000	0.422886	
mm_69358.1	chr7	130488664	130488864	-	1	NA	NA	NA	30816	NM_001136054	11907	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0.000000	0.328358	-68(GACTTTTAAAAG,-,0.00),-66(CTTTTAAAAGAC,+,0.00)
mm_109986.1	chr12	14147003	14147203	-	1	NA	NA	NA	4935	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	0.005000	0.373134	
mm_49740.1	chr6	34745748	34745948	+	1	NA	NA	NA	-34584	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.035000	0.492537	
mm_101307.1	chr11	22610289	22610489	-	1	NA	NA	NA	98106	NM_153596	103765	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.005000	0.502488	
mm_37575.1	chr4	126255987	126256187	-	1	NA	NA	NA	232	NM_144941	245877	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0.120000	0.756219	
mm_130105.1	chr15	89429711	89429911	-	1	NA	NA	NA	116	NR_037154	12651	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	0.085000	0.616915	
mm_2834.1	chr1	131525338	131525538	+	1	NA	NA	NA	1923	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.035000	0.562189	
mm_155745.1	chrX	96166793	96166993	+	1	NA	NA	NA	70848	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.015000	0.492537	
mm_3017.1	chr1	133363719	133363919	+	1	NA	NA	NA	247	NM_175443	214253	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	0.080000	0.726368	
mm_82275.1	chr9	7353390	7353590	-	1	NA	NA	NA	6116	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.398010	
mm_5125.1	chr1	9631009	9631209	-	1	NA	NA	NA	-17	NR_015470	72481	Mm.279818	NR_015470	ENSMUSG00000079671	2610203C22Rik	2310007M24Rik	RIKEN cDNA 2610203C22 gene	ncRNA	0.015000	0.502488	
mm_85633.1	chr9	107635283	107635483	-	1	NA	NA	NA	-41	NM_008138	14678	Mm.196464	NM_008138	ENSMUSG00000032562	Gnai2	C76432|Galphai2|Gia|Gnai-2	guanine nucleotide binding protein (G protein), alpha inhibiting 2	protein-coding	0.120000	0.736318	
mm_140603.1	chr17	10319287	10319487	-	1	NA	NA	NA	-26	NM_001159517	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.175000	0.815920	
mm_117720.1	chr13	95444670	95444870	-	1	NA	NA	NA	61	NM_198408	12919	Mm.316614	NM_198408	ENSMUSG00000021680	Crhbp	CRH-BP	corticotropin releasing hormone binding protein	protein-coding	0.025000	0.552239	-34(CTCTATAAAAGA,-,0.00)
mm_11918.1	chr2	52071780	52071980	+	1	NA	NA	NA	-957	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.010000	0.407960	-7(TTTTTTAAAGAC,+,0.00)
mm_7357.1	chr1	106695618	106695818	-	1	NA	NA	NA	18572	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.015000	0.527363	
mm_83659.1	chr9	49554421	49554621	-	1	NA	NA	NA	36233	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.010000	0.482587	
mm_58856.1	chr7	16891738	16891938	+	1	NA	NA	NA	52	NM_010320	14709	Mm.103770	NM_010320	ENSMUSG00000063594	Gng8	G(y)8	guanine nucleotide binding protein (G protein), gamma 8	protein-coding	0.025000	0.587065	
mm_105481.1	chr11	105939858	105940058	-	1	NA	NA	NA	4189	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.015000	0.592040	
mm_165521.1	chr2	174284133	174284333	+	1	NA	NA	NA	-87	NM_019690	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.055000	0.616915	53(AACTTTATAGGG,-,0.00),55(CTTTATAGGGCC,+,0.00)
mm_12768.1	chr2	79289141	79289341	+	1	NA	NA	NA	33815	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.005000	0.343284	
mm_108569.1	chr12	84806959	84807159	+	1	NA	NA	NA	33789	NM_028863	74316	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0.020000	0.467662	
mm_106100.1	chr11	116247107	116247307	-	1	NA	NA	NA	-9116	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding	0.010000	0.512438	
mm_99857.1	chr11	109364963	109365163	+	1	NA	NA	NA	-1409	NR_038097	100036768	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	OTTMUSG00000003456	predicted gene 11696	ncRNA	0.015000	0.502488	
mm_67358.1	chr7	79837602	79837802	-	1	NA	NA	NA	4650	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.005000	0.532338	36(GCTCTTATGCCC,+,0.00)
mm_20718.1	chr2	134644083	134644283	-	1	NA	NA	NA	-62	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding	0.075000	0.676617	
mm_113851.1	chr13	47208925	47209125	+	1	NA	NA	NA	15022	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.005000	0.412935	
mm_75369.1	chr8	45306714	45306914	-	1	NA	NA	NA	-11979	NM_008455	16621	Mm.482691	NM_008455	ENSMUSG00000109764	Klkb1	APS|Kal-3|Kal3|Klk3|PSA	kallikrein B, plasma 1	protein-coding	0.000000	0.388060	
mm_7453.1	chr1	120265275	120265475	-	1	NA	NA	NA	-95	NM_133186	68428	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.060000	0.676617	
mm_40063.1	chr5	33996676	33996876	+	1	NA	NA	NA	792	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.170000	0.820896	
mm_114635.1	chr13	76384273	76384473	+	1	NA	NA	NA	-588	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.130000	0.751244	
mm_15223.1	chr2	154472178	154472378	+	1	NA	NA	NA	35794	NM_009823	12396	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	0.005000	0.417910	
mm_163856.1	chr14	19418433	19418633	+	1	NA	NA	NA	184054	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.323383	
mm_121669.1	chr14	12437445	12437645	-	1	NA	NA	NA	-91680	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	0.015000	0.502488	
mm_123834.1	chr14	70628956	70629156	-	1	NA	NA	NA	-9	NM_001252665	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.030000	0.601990	
mm_44694.1	chr5	30355152	30355352	-	1	NA	NA	NA	13589	NM_001033460	381738	Mm.389604	NM_001033460	ENSMUSG00000073102	Drc1	Ccdc164|Gm1060|b2b1654Clo	dynein regulatory complex subunit 1	protein-coding	0.015000	0.547264	
mm_113645.1	chr13	42301369	42301569	+	1	NA	NA	NA	-7	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.035000	0.512438	
mm_15079.1	chr2	153161200	153161400	+	1	NA	NA	NA	-1	NM_133847	99237	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.040000	0.512438	
mm_75358.1	chr8	45261980	45262180	-	1	NA	NA	NA	-49	NM_028066	109821	Mm.33326	NM_028066	ENSMUSG00000031645	F11	1600027G01Rik|AI503996|Cf11|FXI|PTA	coagulation factor XI	protein-coding	0.025000	0.427861	
mm_70016.1	chr7	142512040	142512240	-	1	NA	NA	NA	-5369	NR_033261	677289	Mm.350054	NR_033261	ENSMUSG00000043795	Prr33	ENSMUSG00000043795|Gm14492|OTTMUSG00000016823	proline rich 33	ncRNA	0.010000	0.537313	
mm_166286.1	chr5	98030857	98031057	-	1	NA	NA	NA	5	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.105000	0.686567	
mm_128465.1	chr15	50814172	50814372	-	1	NA	NA	NA	74777	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.005000	0.303483	
mm_25944.1	chr3	131496807	131497007	+	1	NA	NA	NA	-67861	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.030000	0.457711	-34(GGGTATAAAGAG,-,0.00)
mm_111669.1	chr12	103338103	103338303	-	1	NA	NA	NA	17798	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.040000	0.582090	
mm_45907.1	chr5	89416181	89416381	-	1	NA	NA	NA	41617	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.005000	0.293532	
mm_167143.1	chr7	127981850	127982050	+	1	NA	NA	NA	11917	NM_023258	66824	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	0.010000	0.402985	
mm_29545.1	chr3	116712610	116712810	-	1	NA	NA	NA	-430	NM_144902	229782	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	0.015000	0.482587	
mm_105737.1	chr11	109298032	109298232	-	1	NA	NA	NA	49	NM_001165934	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0.090000	0.661692	
mm_42655.1	chr5	119325925	119326125	+	1	NA	NA	NA	-126007	NR_046033	665194	Mm.491047	NR_046033	ENSMUSG00000107334	Gm7538	EG665194	predicted gene 7538	ncRNA	0.005000	0.522388	
mm_63010.1	chr7	120940575	120940775	+	1	NA	NA	NA	22931	NM_001164096	26939	Mm.193632	NM_025298	ENSMUSG00000030880	Polr3e	RPC5|Sin	polymerase (RNA) III (DNA directed) polypeptide E	protein-coding	0.035000	0.582090	
mm_121049.1	chr14	84443461	84443661	+	1	NA	NA	NA	-2	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0.085000	0.616915	
mm_101817.1	chr11	46389489	46389689	-	1	NA	NA	NA	-74	NM_001281965	16428	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	0.015000	0.457711	
mm_86049.1	chr9	114520517	114520717	-	1	NA	NA	NA	-24073	NM_009916	12773	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	0.015000	0.323383	
mm_149364.1	chr19	11321312	11321512	+	1	NA	NA	NA	13283	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.005000	0.373134	
mm_43409.1	chr5	135887900	135888100	+	1	NA	NA	NA	81	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.065000	0.601990	-80(CCATTAATAGAG,+,0.00)
mm_160769.1	chr10	110000003	110000203	-	1	NA	NA	NA	116	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.045000	0.522388	
mm_114495.1	chr13	69959733	69959933	+	1	NA	NA	NA	0	NR_138559	67550	Mm.158159	NR_138559		4933416O17Rik	-	RIKEN cDNA 4933416O17 gene	ncRNA	0.005000	0.437811	
mm_97719.1	chr11	80209616	80209816	+	1	NA	NA	NA	661	NM_021536	59040	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	0.020000	0.477612	
mm_84062.1	chr9	58199667	58199867	-	1	NA	NA	NA	1948	NM_001161535	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.060000	0.587065	
mm_93845.1	chr10	121628670	121628870	-	1	NA	NA	NA	-2454	NM_001081056	73192	Mm.25042	NM_001081056	ENSMUSG00000034667	Xpot	1110004L07Rik|3110065H13Rik|AI452076|C79645|EXPORTIN-T	exportin, tRNA (nuclear export receptor for tRNAs)	protein-coding	0.010000	0.437811	
mm_144008.1	chr17	88305292	88305492	-	1	NA	NA	NA	-135320	NM_180974	14236	Mm.112824	NM_180974	ENSMUSG00000034998	Foxn2	3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF	forkhead box N2	protein-coding	0.035000	0.562189	
mm_35243.1	chr4	19877379	19877579	-	1	NA	NA	NA	45087	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.000000	0.323383	21(CTTTAAATAGGA,+,0.00)
mm_91320.1	chr10	24959807	24960007	-	1	NA	NA	NA	-32437	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.005000	0.507463	
mm_165985.1	chr4	107253135	107253335	+	1	NA	NA	NA	298	NM_029985	77809	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	0.090000	0.741294	
mm_84146.1	chr9	59410530	59410730	-	1	NA	NA	NA	-57122	NM_175325	102774	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	0.010000	0.383085	
mm_169801.1	chr16	17222366	17222566	+	1	NA	NA	NA	-11121	NM_178922	58180	Mm.261602	NM_178922	ENSMUSG00000050240	Hic2	AA409108|HRG22|mKIAA1020	hypermethylated in cancer 2	protein-coding	0.040000	0.462687	
mm_22401.1	chr2	181240977	181241177	-	1	NA	NA	NA	950	NM_183162	229003	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.020000	0.562189	
mm_43866.1	chr5	143481906	143482106	+	1	NA	NA	NA	17513	NM_144915	231871	Mm.469963	NM_144915	ENSMUSG00000039206	Daglb	E330036I19Rik	diacylglycerol lipase, beta	protein-coding	0.005000	0.368159	9(TTTTATATAGTC,+,0.00)
mm_135710.1	chr16	55523591	55523791	-	1	NA	NA	NA	28960	NR_039578	100628589		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.015000	0.407960	
mm_30529.1	chr4	3090579	3090779	+	1	NA	NA	NA	-81404	NM_001167534	100312470	Mm.480297	NM_001167534	ENSMUSG00000094798	Vmn1r2	Gm11776|OTTMUSG00000004179	vomeronasal 1 receptor 2	protein-coding	0.030000	0.368159	
mm_35213.1	chr4	19635225	19635425	-	1	NA	NA	NA	60259	NM_025476	66302	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	0.005000	0.288557	
mm_33288.1	chr4	128883480	128883680	+	1	NA	NA	NA	-560	NM_178110	67525	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0.130000	0.800995	
mm_162392.1	chr1	76596552	76596752	+	1	NA	NA	NA	87092	NR_105761	102465175		NR_105761	ENSMUSG00000098611	Mir6343	Gm27304|mmu-mir-6343	microRNA 6343	ncRNA	0.000000	0.298507	
mm_122348.1	chr14	38701812	38702012	-	1	NA	NA	NA	-196390	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA	0.000000	0.253731	
mm_108168.1	chr12	76404116	76404316	+	1	NA	NA	NA	40	NM_001002012	15512	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0.070000	0.656716	
mm_167725.1	chr9	101074529	101074729	+	1	NA	NA	NA	-133	NM_001100451	77853	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	male-specific lethal 2 homolog (Drosophila)	protein-coding	0.135000	0.791045	
mm_37098.1	chr4	116615189	116615389	-	1	NA	NA	NA	12208	NM_001081475	50927	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.005000	0.373134	
mm_166261.1	chr5	87694458	87694658	+	1	NA	NA	NA	4867	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.010000	0.467662	
mm_128180.1	chr15	34495069	34495269	-	1	NA	NA	NA	77	NM_008287	15473	Mm.491154	NM_008287	ENSMUSG00000022323	Rida	HR12|HRP12|Hrsp12	reactive intermediate imine deaminase A homolog	protein-coding	0.045000	0.517413	
mm_157400.1	chrX	38424203	38424403	-	1	NA	NA	NA	32157	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.010000	0.447761	
mm_80423.1	chr9	77917281	77917481	+	1	NA	NA	NA	16	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.105000	0.656716	
mm_143405.1	chr17	70805895	70806095	-	1	NA	NA	NA	40782	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.020000	0.532338	
mm_1335.1	chr1	66032905	66033105	+	1	NA	NA	NA	106483	NM_027010	12969	Mm.275362	NM_027010	ENSMUSG00000025945	Crygf	3110001K11Rik|Cryg-2|DGcry-2|Len-2	crystallin, gamma F	protein-coding	0.035000	0.482587	
mm_62454.1	chr7	101421609	101421809	+	1	NA	NA	NA	18	NM_001143848	207728	Mm.247564	NM_001008548	ENSMUSG00000030653	Pde2a	CGS-PDE|cGSPDE	phosphodiesterase 2A, cGMP-stimulated	protein-coding	0.020000	0.601990	
mm_159017.1	chr1	171252076	171252276	+	1	NA	NA	NA	2047	NM_172845	240913	Mm.491147	NM_172845	ENSMUSG00000006403	Adamts4	ADAM-TS4|ADAMTS-2|ADMP-1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	protein-coding	0.035000	0.601990	
mm_83349.1	chr9	44342204	44342404	-	1	NA	NA	NA	77	NM_001110251	15288	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	0.010000	0.557214	
mm_46077.1	chr5	92323775	92323975	-	1	NA	NA	NA	4204	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.020000	0.402985	
mm_74606.1	chr8	12439092	12439292	-	1	NA	NA	NA	43673	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.015000	0.517413	
mm_150885.1	chr19	45150578	45150778	+	1	NA	NA	NA	-37	NM_021901	21908	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	0.065000	0.616915	
mm_40743.1	chr5	66686789	66686989	+	1	NA	NA	NA	-10392	NR_102714	101202684	Mm.381468	NR_102714	ENSMUSG00000087601	Uchl1os	Gm16832|Uchl1as	ubiquitin carboxy-terminal hydrolase L1, opposite strand	ncRNA	0.050000	0.587065	
mm_116435.1	chr13	42241651	42241851	-	1	NA	NA	NA	-59725	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.005000	0.447761	-33(ACTTATAAAGAG,+,0.00)
mm_166076.1	chr4	136943113	136943313	+	1	NA	NA	NA	13603	NM_007939	13842	Mm.1390	NM_007939	ENSMUSG00000028661	Epha8	AW047546|Eek|Hek3|mKIAA1459	Eph receptor A8	protein-coding	0.065000	0.507463	
mm_49150.1	chr6	11933293	11933493	+	1	NA	NA	NA	7512	NM_001168382	75725	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	0.005000	0.333333	
mm_3424.1	chr1	146495603	146495803	+	1	NA	NA	NA	37	NM_153539	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.000000	0.447761	
mm_13035.1	chr2	91054494	91054694	+	1	NA	NA	NA	578	NM_008948	19182	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	0.040000	0.557214	
mm_34975.1	chr4	156012714	156012914	+	1	NA	NA	NA	-881	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.025000	0.512438	
mm_57475.1	chr6	125233031	125233231	-	1	NA	NA	NA	-1271	NM_145391	213233	Mm.296902	NM_145391	ENSMUSG00000038213	Tapbpl	BC017613|TAPBPL-R|Tapbplr	TAP binding protein-like	protein-coding	0.005000	0.527363	
mm_60402.1	chr7	44475673	44475873	+	1	NA	NA	NA	5426	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.532338	
mm_127769.1	chr15	3279113	3279313	-	1	NA	NA	NA	8236	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.010000	0.532338	
mm_13106.1	chr2	91526660	91526860	+	1	NA	NA	NA	-19562	NM_001165989	75786	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0.095000	0.621891	-82(TTCCCTTTAAGG,-,0.00),-80(CCCTTTAAGGCC,+,0.00),-79(CCTTTAAGGCCG,+,0.00)
mm_63589.1	chr7	128134698	128134898	+	1	NA	NA	NA	5230	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.005000	0.502488	
mm_117388.1	chr13	73347192	73347392	-	1	NA	NA	NA	92	NR_045293	432777	Mm.415319	NR_045293		D630045M09Rik	AU019512	RIKEN cDNA D630045M09 gene	ncRNA	0.005000	0.507463	
mm_154040.1	chr19	53789602	53789802	-	1	NA	NA	NA	-102529	NM_011050	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.020000	0.592040	
mm_66831.1	chr7	48845147	48845347	-	1	NA	NA	NA	-1576	NM_013808	13009	Mm.17235	NM_013808	ENSMUSG00000030470	Csrp3	CRP3|MLP|MMLP	cysteine and glycine-rich protein 3	protein-coding	0.020000	0.487562	
mm_172958.1	chr9	88482064	88482264	-	1	NA	NA	NA	233	NM_019666	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.135000	0.721393	
mm_10317.1	chr2	11205930	11206130	+	1	NA	NA	NA	33648	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.005000	0.402985	47(CAGTATAAATGC,-,0.00)
mm_72042.1	chr8	71026509	71026709	+	1	NA	NA	NA	146	NR_045487	69419	Mm.188688	NR_045487	ENSMUSG00000101854	1700026F02Rik	-	RIKEN cDNA 1700026F02 gene	ncRNA	0.035000	0.611940	
mm_142302.1	chr17	42692212	42692412	-	1	NA	NA	NA	-28	NM_030067	78249	Mm.66217	NM_030067	ENSMUSG00000023918	Adgrf4	4632435A09Rik|AV239010|Gpr115	adhesion G protein-coupled receptor F4	protein-coding	0.020000	0.492537	
mm_116134.1	chr13	28953344	28953544	-	1	NA	NA	NA	238	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.060000	0.537313	
mm_99769.1	chr11	107022640	107022840	+	1	NA	NA	NA	-5483	NM_001163473	69066	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	OTTMUSG00000003581	RIKEN cDNA 1810010H24 gene	protein-coding	0.005000	0.507463	
mm_22273.1	chr2	178594262	178594462	-	1	NA	NA	NA	163847	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.015000	0.552239	
mm_127016.1	chr15	95959088	95959288	+	1	NA	NA	NA	120365	NR_126493	402773	Mm.210567	NM_001033483	ENSMUSG00000078925	D030018L15Rik	-	nuclear receptor coactivator 2 pseudogene	pseudo	0.035000	0.487562	
mm_43995.1	chr5	146832874	146833074	+	1	NA	NA	NA	84	NM_019647	19933	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	0.110000	0.641791	
mm_46820.1	chr5	113138860	113139060	-	1	NA	NA	NA	-375	NM_001347397	243219	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.040000	0.636816	
mm_123462.1	chr14	65833822	65834022	-	1	NA	NA	NA	47	NM_028039	71988	Mm.249280	NM_028039	ENSMUSG00000022034	Esco2	2410004I17Rik|D030072L07Rik	establishment of sister chromatid cohesion N-acetyltransferase 2	protein-coding	0.105000	0.621891	
mm_152385.1	chr19	10457451	10457651	-	1	NA	NA	NA	-104	NM_001111140	278795	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0.130000	0.761194	
mm_100795.1	chr11	4939946	4940146	-	1	NA	NA	NA	-7475	NM_001243043	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.010000	0.547264	
mm_79485.1	chr9	56995321	56995521	+	1	NA	NA	NA	453	NM_019651	56294	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	0.115000	0.696517	
mm_135392.1	chr16	44332918	44333118	-	1	NA	NA	NA	-180	NM_001159419	320007	Mm.242144	NM_198034	ENSMUSG00000022696	Sidt1	AW045928|B830021E24Rik	SID1 transmembrane family, member 1	protein-coding	0.040000	0.497512	
mm_117125.1	chr13	60902495	60902695	-	1	NA	NA	NA	2252	NM_026429	116913	Mm.443229	NM_026429	ENSMUSG00000062705	Tpbpb	1600012N09Rik	trophoblast specific protein beta	protein-coding	0.000000	0.442786	
mm_157149.1	chrX	9461836	9462036	-	1	NA	NA	NA	7388	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.398010	
mm_8549.1	chr1	155159216	155159416	-	1	NA	NA	NA	613	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.080000	0.592040	
mm_132954.1	chr16	49955721	49955921	+	1	NA	NA	NA	-24639	NR_045001	628951	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0.010000	0.487562	
mm_17530.1	chr2	29621133	29621333	-	1	NA	NA	NA	1513	NM_001039086	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.020000	0.512438	
mm_61168.1	chr7	59231030	59231230	+	1	NA	NA	NA	2378	NM_011668	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|mKIAA4216	ubiquitin protein ligase E3A	protein-coding	0.010000	0.263682	-88(CCCTTTTTATGG,-,0.00),-86(CTTTTTATGGTT,+,0.00)
mm_8868.1	chr1	162859464	162859664	-	1	NA	NA	NA	436	NM_001330291	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.020000	0.537313	
mm_26282.1	chr3	142505603	142505803	+	1	NA	NA	NA	8769	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.005000	0.378109	
mm_152204.1	chr19	7610374	7610574	-	1	NA	NA	NA	-2095	NM_025731	66727	Mm.116803	NM_025731	ENSMUSG00000024973	Hrasls5	1700055A14Rik|1700086E08Rik|4921526K24Rik|HRSL5|iNAT	HRAS-like suppressor family, member 5	protein-coding	0.010000	0.442786	
mm_166598.1	chr6	67376143	67376343	-	1	NA	NA	NA	-106	NM_008354	16162	Mm.188337	NM_008354	ENSMUSG00000018341	Il12rb2	A930027I18Rik|IL-12RB2|Ifnm	interleukin 12 receptor, beta 2	protein-coding	0.050000	0.597015	
mm_124362.1	chr14	105177207	105177407	-	1	NA	NA	NA	20	NM_134077	74213	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0.090000	0.611940	
mm_14643.1	chr2	136892125	136892325	+	1	NA	NA	NA	-38	NM_028834	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.050000	0.522388	
mm_115231.1	chr13	109902959	109903159	+	1	NA	NA	NA	-750	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.155000	0.746269	
mm_40158.1	chr5	35587930	35588130	+	1	NA	NA	NA	733	NR_045807	74364	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	0.030000	0.587065	
mm_38433.1	chr4	139352232	139352432	-	1	NA	NA	NA	244	NM_001290810	69902	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	0.110000	0.706468	
mm_165727.1	chr3	104511654	104511854	-	1	NA	NA	NA	164	NM_001310698	269473	Mm.34855	NM_001025067	ENSMUSG00000032913	Lrig2	4632419I10Rik|BB096938|LIG-2	leucine-rich repeats and immunoglobulin-like domains 2	protein-coding	0.105000	0.711443	
mm_48065.1	chr5	136567861	136568061	-	1	NA	NA	NA	-471	NM_001291238	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.080000	0.671642	
mm_158495.1	chrX	142358238	142358438	-	1	NA	NA	NA	32197	NM_001033600	50790	Mm.391337	NM_019477	ENSMUSG00000031278	Acsl4	9430020A05Rik|ACS4|AU018108|Facl4|Lacs4	acyl-CoA synthetase long-chain family member 4	protein-coding	0.015000	0.507463	-36(ATCTTTTTAAGG,-,0.00),-34(CTTTTTAAGGCA,+,0.00)
mm_65204.1	chr7	19696949	19697149	-	1	NA	NA	NA	1349	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.040000	0.597015	
mm_150624.1	chr19	41273513	41273713	+	1	NA	NA	NA	-9609	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.010000	0.487562	
mm_56509.1	chr6	99364184	99364384	-	1	NA	NA	NA	71061	NM_053202	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.035000	0.417910	
mm_50372.1	chr6	48677581	48677781	+	1	NA	NA	NA	1546	NM_174960	317758	Mm.116971	NM_174960	ENSMUSG00000051124	Gimap9	A630002K24|BB145400	GTPase, IMAP family member 9	protein-coding	0.030000	0.502488	
mm_87704.1	chr10	59916737	59916937	+	1	NA	NA	NA	34933	NM_029083	74747	Mm.21697	NM_029083	ENSMUSG00000020108	Ddit4	5830413E08Rik|AA415483|REDD1|Rtp801|dig2	DNA-damage-inducible transcript 4	protein-coding	0.025000	0.562189	55(GCCTAGAAAAAG,-,0.00)
mm_123585.1	chr14	67062987	67063187	-	1	NA	NA	NA	9384	NM_028032	71978	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0.010000	0.432836	
mm_139148.1	chr17	47529219	47529419	+	1	NA	NA	NA	24268	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.358209	
mm_23379.1	chr3	55707446	55707646	+	1	NA	NA	NA	-74964	NM_010750	17116	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.005000	0.338308	
mm_28682.1	chr3	95357099	95357299	-	1	NA	NA	NA	3	NM_001163641	84505	Mm.490259	NM_018877	ENSMUSG00000015697	Setdb1	AU022152|ESET|KMT1E|mKIAA0067	SET domain, bifurcated 1	protein-coding	0.085000	0.661692	
mm_2787.1	chr1	130848340	130848540	+	1	NA	NA	NA	-17337	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.015000	0.452736	
mm_121902.1	chr14	21889677	21889877	-	1	NA	NA	NA	-40867	NM_026965	69156	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0.015000	0.502488	
mm_42513.1	chr5	115543991	115544191	+	1	NA	NA	NA	-15376	NM_007475	11837	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.030000	0.641791	
mm_27469.1	chr3	52856260	52856460	-	1	NA	NA	NA	71306	NR_040555	622124	Mm.389434	NR_040555	ENSMUSG00000104401	Gm20750	-	predicted gene, 20750	ncRNA	0.020000	0.472637	
mm_111427.1	chr12	91686027	91686227	-	1	NA	NA	NA	-95640	NM_175335	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.015000	0.631841	
mm_165098.1	chr19	55183694	55183894	-	1	NA	NA	NA	2909	NM_009348	21684	Mm.42139	NM_009348	ENSMUSG00000024979	Tectb	Tctnb	tectorin beta	protein-coding	0.025000	0.547264	
mm_6617.1	chr1	75506347	75506547	-	1	NA	NA	NA	5	NM_178884	98733	Mm.236454	NM_178884	ENSMUSG00000026211	Obsl1	AW822216	obscurin-like 1	protein-coding	0.050000	0.696517	
mm_97591.1	chr11	78945811	78946011	+	1	NA	NA	NA	20620	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.020000	0.572139	
mm_2206.1	chr1	89580174	89580374	+	1	NA	NA	NA	103618	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.175000	0.771144	
mm_8127.1	chr1	136212722	136212922	-	1	NA	NA	NA	6	NM_001329610	76422	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	0.005000	0.567164	
mm_72755.1	chr8	85421479	85421679	+	1	NA	NA	NA	11262	NR_033144	66714	Mm.272748	NM_025722	ENSMUSG00000036934	4921524J17Rik	-	RIKEN cDNA 4921524J17 gene	protein-coding	0.005000	0.467662	
mm_79947.1	chr9	66032409	66032609	+	1	NA	NA	NA	-27660	NM_011149	19035	Mm.335249	NM_011149	ENSMUSG00000032383	Ppib	AA408962|AA553318|AI844835|Cphn-2|Cphn2|CyP-20b	peptidylprolyl isomerase B	protein-coding	0.005000	0.393035	
mm_65621.1	chr7	27537665	27537865	-	1	NA	NA	NA	14504	NM_001033315	233020	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.025000	0.606965	
mm_642.1	chr1	40404845	40405045	+	1	NA	NA	NA	-24625	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.020000	0.497512	-11(TCTTTAAAACCA,+,0.00)
mm_6446.1	chr1	74001475	74001675	-	1	NA	NA	NA	122872	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.035000	0.651741	
mm_169846.1	chr16	3120584	3120784	-	1	NA	NA	NA	-471714	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.020000	0.482587	
mm_18128.1	chr2	45004484	45004684	-	1	NA	NA	NA	18593	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.412935	
mm_130047.1	chr15	89140580	89140780	-	1	NA	NA	NA	23	NM_013871	29857	Mm.38343	NM_013871	ENSMUSG00000022610	Mapk12	AW123708|Erk6|P38gamma|Prkm12|Sapk3	mitogen-activated protein kinase 12	protein-coding	0.070000	0.676617	
mm_91036.1	chr10	18234869	18235069	-	1	NA	NA	NA	12	NM_001346751	215814	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	0.070000	0.606965	
mm_98334.1	chr11	90675909	90676109	+	1	NA	NA	NA	11592	NM_028011	71943	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	0.000000	0.462687	
mm_18969.1	chr2	76811301	76811501	-	1	NA	NA	NA	136086	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.040000	0.477612	
mm_148942.1	chr19	7056850	7057050	+	1	NA	NA	NA	182	NM_134147	107227	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0.120000	0.771144	
mm_74681.1	chr8	14090222	14090422	-	1	NA	NA	NA	5	NM_001034862	234086	Mm.268896	NM_001034862	ENSMUSG00000051978	Erich1	-	glutamate rich 1	protein-coding	0.090000	0.616915	
mm_58472.1	chr7	3390789	3390989	+	1	NA	NA	NA	-3153	NM_133190	81905	Mm.357990	NM_133190	ENSMUSG00000053395	Cacng8	-	calcium channel, voltage-dependent, gamma subunit 8	protein-coding	0.015000	0.557214	
mm_126451.1	chr15	80820309	80820509	+	1	NA	NA	NA	21799	NM_177124	213988	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.005000	0.522388	
mm_64786.1	chr7	5129319	5129519	-	1	NA	NA	NA	-3469	NM_009028	19428	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	0.045000	0.462687	
mm_82589.1	chr9	21238742	21238942	-	1	NA	NA	NA	490	NM_016679	50868	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.130000	0.751244	
mm_2823.1	chr1	131138344	131138544	+	1	NA	NA	NA	-210	NM_145508	226419	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.050000	0.557214	
mm_158350.1	chrX	134541774	134541974	-	1	NA	NA	NA	-204	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.085000	0.621891	
mm_150276.1	chr19	34248337	34248537	+	1	NA	NA	NA	6936	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.025000	0.517413	
mm_49822.1	chr6	37530122	37530322	+	1	NA	NA	NA	49	NM_145364	208665	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0.010000	0.477612	
mm_111227.1	chr12	84756605	84756805	-	1	NA	NA	NA	16407	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.015000	0.562189	
mm_112817.1	chr13	20796418	20796618	+	1	NA	NA	NA	2405	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.472637	
mm_89313.1	chr10	87925164	87925364	+	1	NA	NA	NA	-41407	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.010000	0.427861	
mm_70627.1	chr8	13686679	13686879	+	1	NA	NA	NA	-9192	NM_009025	19414	Mm.18517	NM_009025	ENSMUSG00000031453	Rasa3	AI326412|C86362|E130011G04|GAPIII|hlb381|scat	RAS p21 protein activator 3	protein-coding	0.005000	0.552239	
mm_69910.1	chr7	141640216	141640416	-	1	NA	NA	NA	15003	NM_001330001	353328	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0.020000	0.542289	
mm_89043.1	chr10	82859127	82859327	+	1	NA	NA	NA	21	NM_015762	50493	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	0.090000	0.626866	
mm_36836.1	chr4	106492137	106492337	-	1	NA	NA	NA	6	NM_080458	140475	Mm.135448	NM_080458	ENSMUSG00000025418	Bsnd	-	Bartter syndrome, infantile, with sensorineural deafness (Barttin)	protein-coding	0.005000	0.582090	
mm_158159.1	chrX	103480809	103481009	-	1	NA	NA	NA	2324	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.020000	0.343284	
mm_135869.1	chr16	61056274	61056474	-	1	NA	NA	NA	-450843	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0.055000	0.631841	
mm_91531.1	chr10	37233216	37233416	-	1	NA	NA	NA	-94390	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.005000	0.442786	43(CCTTTTATGTGA,+,0.00)
mm_9551.1	chr1	173923744	173923944	-	1	NA	NA	NA	-10798	NM_001033450	381308	Mm.490248	NM_001033450	ENSMUSG00000026536	Ifi211	A730048F03|Ifi205b|Mnda|ifi-205-B	interferon activated gene 211	protein-coding	0.000000	0.293532	
mm_112326.1	chr12	115507924	115508124	-	1	NA	NA	NA	187770	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.000000	0.422886	
mm_78370.1	chr9	27299130	27299330	+	1	NA	NA	NA	2	NM_001129787	235086	Mm.48719	NM_001033323	ENSMUSG00000034275	Igsf9b	AI414108|AI854107|Gm508|mKIAA1030	immunoglobulin superfamily, member 9B	protein-coding	0.100000	0.706468	
mm_121939.1	chr14	24004791	24004991	-	1	NA	NA	NA	-100	NR_131107	78019	Mm.243845	NR_131107		4930519K11Rik	-	RIKEN cDNA 4930519K11 gene	ncRNA	0.120000	0.726368	
mm_72316.1	chr8	78066242	78066442	+	1	NA	NA	NA	-147000	NM_183096	73301	Mm.61243	NM_183096	ENSMUSG00000037101	Ttc29	1700031F13Rik	tetratricopeptide repeat domain 29	protein-coding	0.015000	0.542289	
mm_25044.1	chr3	98299020	98299220	+	1	NA	NA	NA	18689	NM_008256	15360	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.010000	0.472637	
mm_49414.1	chr6	28773196	28773396	+	1	NA	NA	NA	58451	NM_138682	192198	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.000000	0.338308	
mm_68465.1	chr7	110464551	110464751	-	1	NA	NA	NA	150269	NM_177324	319934	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.010000	0.378109	
mm_131683.1	chr16	20677524	20677724	+	1	NA	NA	NA	4897	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.020000	0.532338	
mm_85944.1	chr9	112101588	112101788	-	1	NA	NA	NA	17023	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.005000	0.517413	33(GCTTTTAGACTG,+,0.00)
mm_55573.1	chr6	71394929	71395129	-	1	NA	NA	NA	21602	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.005000	0.442786	
mm_104201.1	chr11	87987404	87987604	-	1	NA	NA	NA	29	NM_026556	68097	Mm.246436	NM_026556	ENSMUSG00000020483	Dynll2	1700064A15Rik|6720463E02Rik|C87222|DLC8|DLC8b|Dlc2	dynein light chain LC8-type 2	protein-coding	0.185000	0.805970	
mm_75873.1	chr8	70764537	70764737	-	1	NA	NA	NA	2026	NM_023065	65972	Mm.30241	NM_023065	ENSMUSG00000031838	Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	0.030000	0.542289	
mm_82630.1	chr9	21927439	21927639	-	1	NA	NA	NA	-4	NM_001253870	235043	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0.065000	0.606965	
mm_91686.1	chr10	43971865	43972065	-	1	NA	NA	NA	32881	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.005000	0.378109	-63(GCTTTTATATCT,+,0.00)
mm_150915.1	chr19	46075751	46075951	+	1	NA	NA	NA	4	NM_001039351	70769	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	0.105000	0.641791	
mm_68572.1	chr7	115737835	115738035	-	1	NA	NA	NA	63674	NM_001277328	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.005000	0.293532	
mm_127164.1	chr15	98643969	98644169	+	1	NA	NA	NA	9302	NM_001286226	12297	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0.025000	0.547264	
mm_112615.1	chr13	15463632	15463832	+	1	NA	NA	NA	9	NM_008130	14634	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0.110000	0.656716	
mm_10091.1	chr2	3284111	3284311	+	1	NA	NA	NA	-1	NM_008708	18108	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	0.130000	0.771144	
mm_50647.1	chr6	51464355	51464555	+	1	NA	NA	NA	5439	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.010000	0.422886	
mm_52590.1	chr6	116669345	116669545	+	1	NA	NA	NA	4391	NM_178045	213391	Mm.257931	NM_178045	ENSMUSG00000042129	Rassf4	3830411C14Rik|AD037|AI586137	Ras association (RalGDS/AF-6) domain family member 4	protein-coding	0.000000	0.492537	-87(GCCCAGATAAGG,-,0.00)
mm_150375.1	chr19	34961751	34961951	+	1	NA	NA	NA	39493	NM_183046	240641	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|B130024C23|C330014J10Rik|Mphosph1|magoo	kinesin family member 20B	protein-coding	0.010000	0.447761	
mm_108748.1	chr12	88794923	88795123	+	1	NA	NA	NA	519	NM_001198587	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.015000	0.487562	-63(CCCTCTTTATGG,-,0.00),-61(CTCTTTATGGGA,+,0.00)
mm_170495.1	chr19	23135835	23136035	+	1	NA	NA	NA	-5291	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.045000	0.582090	
mm_52681.1	chr6	117926461	117926661	+	1	NA	NA	NA	9267	NM_001166427	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.010000	0.328358	-6(TTTTTTAAAGCC,+,0.00)
mm_79831.1	chr9	64794501	64794701	+	1	NA	NA	NA	-16410	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.015000	0.467662	
mm_60725.1	chr7	45361472	45361672	+	1	NA	NA	NA	-4591	NR_015480	50994	Mm.389897	NM_016664	ENSMUSG00000091510	Mtag2	MAG	metastasis associated gene 2	ncRNA	0.095000	0.666667	
mm_93020.1	chr10	87860101	87860301	-	1	NA	NA	NA	-910	NM_001111274	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.050000	0.577114	
mm_136366.1	chr16	92801366	92801566	-	1	NA	NA	NA	24608	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.025000	0.552239	
mm_106035.1	chr11	116077840	116078040	-	1	NA	NA	NA	21	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.035000	0.641791	
mm_125674.1	chr15	66577428	66577628	+	1	NA	NA	NA	-44	NM_001081409	239510	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	0.145000	0.756219	
mm_102965.1	chr11	69665740	69665940	-	1	NA	NA	NA	330	NM_001291058	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.025000	0.562189	
mm_148503.1	chr19	4201707	4201907	+	1	NA	NA	NA	-204	NM_011237	19367	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0.040000	0.601990	
mm_76504.1	chr8	86883186	86883386	-	1	NA	NA	NA	1972	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.015000	0.557214	
mm_139447.1	chr17	55445651	55445851	+	1	NA	NA	NA	34	NM_172829	240119	Mm.311687	NM_172829	ENSMUSG00000024172	St6gal2	C230064G14Rik|St6galII|mKIAA1877	beta galactoside alpha 2,6 sialyltransferase 2	protein-coding	0.125000	0.711443	
mm_138397.1	chr17	35052729	35052929	+	1	NA	NA	NA	2586	NM_033444	114584	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.030000	0.542289	
mm_93179.1	chr10	93589551	93589751	-	1	NA	NA	NA	7	NM_027246	69878	Mm.259642	NM_027246	ENSMUSG00000020018	Snrpf	2010013O18Rik|SMF|sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding	0.120000	0.651741	
mm_171676.1	chr4	53057892	53058092	-	1	NA	NA	NA	46112	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.015000	0.502488	
mm_2577.1	chr1	118481914	118482114	+	1	NA	NA	NA	-22749	NR_027901	68204	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.015000	0.517413	
mm_171791.1	chr5	115802085	115802285	-	1	NA	NA	NA	-43471	NM_007708	12704	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0.050000	0.442786	
mm_167803.1	chr9	123928140	123928340	+	1	NA	NA	NA	40452	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.025000	0.512438	
mm_51440.1	chr6	80067944	80068144	+	1	NA	NA	NA	48401	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.005000	0.303483	
mm_98365.1	chr11	93995272	93995472	+	1	NA	NA	NA	-719	NM_001199203	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.005000	0.522388	
mm_85740.1	chr9	108566853	108567053	-	1	NA	NA	NA	389	NM_023247	66706	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	0.110000	0.636816	
mm_82385.1	chr9	14662868	14663068	-	1	NA	NA	NA	-47968	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.025000	0.497512	-34(CTCTTTTTAAAC,-,0.00),-32(CTTTTTAAACTC,+,0.00),1(ACCTTTTAAAAC,-,0.00),2(CCTTTTAAAACT,+,0.00)
mm_114594.1	chr13	75763800	75764000	+	1	NA	NA	NA	56416	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.000000	0.447761	
mm_92455.1	chr10	77811787	77811987	-	1	NA	NA	NA	-2795	NM_001205009	100040299	Mm.486155	NM_001205009		Gm2696	-	predicted gene 2696	protein-coding	0.025000	0.587065	
mm_172416.1	chr7	24702896	24703096	+	1	NA	NA	NA	-6263	NM_199150	232972	Mm.293074	NM_199150	ENSMUSG00000045587	BC049730	Lypd10	cDNA sequence BC049730	protein-coding	0.020000	0.562189	-33(CCCCTTATAAGC,-,0.00),-31(CCTTATAAGCAC,+,0.00)
mm_145392.1	chr18	57142608	57142808	+	1	NA	NA	NA	9618	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.005000	0.462687	
mm_85017.1	chr9	88273271	88273471	-	1	NA	NA	NA	-54238	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	0.010000	0.472637	
mm_165977.1	chr4	102955715	102955915	+	1	NA	NA	NA	-30564	NM_001163767	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.020000	0.417910	
mm_55147.1	chr6	51466555	51466755	-	1	NA	NA	NA	3239	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.005000	0.373134	
mm_169089.1	chr1	33838916	33839116	-	1	NA	NA	NA	-102	NM_001161816	433287	Mm.383632	NM_001161816		Gm15455	AA692849|OTTMUSG00000022109	predicted gene 15455	protein-coding	0.070000	0.606965	
mm_11799.1	chr2	43635187	43635387	+	1	NA	NA	NA	79962	NM_027552	70789	Mm.105278	NM_027552	ENSMUSG00000026866	Kynu	4432411A05Rik	kynureninase (L-kynurenine hydrolase)	protein-coding	0.000000	0.313433	
mm_80455.1	chr9	77982626	77982826	+	1	NA	NA	NA	65361	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.050000	0.557214	
mm_113539.1	chr13	37857318	37857518	+	1	NA	NA	NA	30025	NM_001039188	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.075000	0.567164	-33(GGGTTTTAAAGC,-,0.00)
mm_62621.1	chr7	107422568	107422768	+	1	NA	NA	NA	51878	NM_021889	60510	Mm.302793	NM_021889	ENSMUSG00000062542	Syt9	-	synaptotagmin IX	protein-coding	0.000000	0.388060	
mm_146323.1	chr18	80704927	80705127	+	1	NA	NA	NA	3146	NM_001164111	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.035000	0.577114	
mm_34046.1	chr4	138217173	138217373	+	1	NA	NA	NA	146	NM_001122897	15441	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	0.125000	0.721393	
mm_82123.1	chr9	123509073	123509273	+	1	NA	NA	NA	-20709	NM_030692	83493	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.005000	0.502488	
mm_51456.1	chr6	82041572	82041772	+	1	NA	NA	NA	44	NM_145570	232146	Mm.489683	NM_145570	ENSMUSG00000035104	Eva1a	BC014699|Fam176a|Tmem166	eva-1 homolog A (C. elegans)	protein-coding	0.060000	0.681592	
mm_106340.1	chr11	118393075	118393275	-	1	NA	NA	NA	8756	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.010000	0.557214	
mm_124952.1	chr15	12824796	12824996	+	1	NA	NA	NA	81	NM_001130149	14000	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	0.075000	0.592040	
mm_92398.1	chr10	76614493	76614693	-	1	NA	NA	NA	8811	NM_146007	12834	Mm.1949	NM_146007	ENSMUSG00000020241	Col6a2	Col6a-2	collagen, type VI, alpha 2	protein-coding	0.070000	0.621891	
mm_72653.1	chr8	84842476	84842676	+	1	NA	NA	NA	-1911	NM_009010	19358	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.005000	0.552239	
mm_62361.1	chr7	100536996	100537196	+	1	NA	NA	NA	-4	NM_183270	68185	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	0.095000	0.641791	
mm_60515.1	chr7	44479690	44479890	+	1	NA	NA	NA	-4727	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.517413	
mm_143882.1	chr17	84306230	84306430	-	1	NA	NA	NA	-118383	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.005000	0.532338	
mm_153920.1	chr19	47314279	47314479	-	1	NA	NA	NA	-40790	NR_105961	102466782		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.055000	0.696517	
mm_147863.1	chr18	64339690	64339890	-	1	NA	NA	NA	-574	NM_194268	225631	Mm.234723	NM_194268	ENSMUSG00000045991	Onecut2	C730009D12|OC-2|Oc2	one cut domain, family member 2	protein-coding	0.035000	0.502488	
mm_93245.1	chr10	95416756	95416956	-	1	NA	NA	NA	1	NM_007706	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.145000	0.746269	
mm_44828.1	chr5	33936163	33936363	-	1	NA	NA	NA	-5	NM_011914	24116	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	0.120000	0.701493	
mm_107208.1	chr12	26444320	26444520	+	1	NA	NA	NA	12032	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.313433	
mm_57163.1	chr6	122800726	122800926	-	1	NA	NA	NA	-19358	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.015000	0.402985	
mm_2674.1	chr1	127228513	127228713	+	1	NA	NA	NA	23627	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.010000	0.547264	
mm_137159.1	chr17	23749272	23749472	+	1	NA	NA	NA	136	NR_015472	638247	Mm.382600	NR_015472	ENSMUSG00000097006	9530082P21Rik	E030034P13Rik	RIKEN cDNA 9530082P21 gene	ncRNA	0.015000	0.547264	
mm_79645.1	chr9	59561887	59562087	+	1	NA	NA	NA	-16350	NM_175235	76183	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0.020000	0.527363	
mm_106137.1	chr11	116490065	116490265	-	1	NA	NA	NA	181	NM_026364	67763	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	0.140000	0.751244	
mm_64255.1	chr7	141744584	141744784	+	1	NA	NA	NA	-44327	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.017442	0.531792	
mm_154664.1	chrX	7874380	7874580	+	1	NA	NA	NA	-3826	NM_138606	18715	Mm.347478	NM_138606	ENSMUSG00000031155	Pim2	DXCch3|Pim-2	proviral integration site 2	protein-coding	0.020000	0.547264	
mm_10502.1	chr2	15526428	15526628	+	1	NA	NA	NA	49	NM_001310455	102635496		NM_001310455	ENSMUSG00000075520	Malrd1	-	MAM and LDL receptor class A domain containing 1	protein-coding	0.000000	0.373134	
mm_121450.1	chr14	120431186	120431386	+	1	NA	NA	NA	-47175	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.000000	0.228856	
mm_169007.1	chr13	105974199	105974399	-	1	NA	NA	NA	530606	NM_008308	15550	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0.000000	0.363184	
mm_7958.1	chr1	133929798	133929998	-	1	NA	NA	NA	-8497	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.015000	0.527363	
mm_169279.1	chr13	94417976	94418176	+	1	NA	NA	NA	59116	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.030000	0.482587	
mm_80075.1	chr9	69989333	69989533	+	1	NA	NA	NA	-33	NM_016787	12175	Mm.159777	NM_016787	ENSMUSG00000011958	Bnip2	5730523P12Rik|BNIP2beta|Nip21	BCL2/adenovirus E1B interacting protein 2	protein-coding	0.115000	0.701493	
mm_50840.1	chr6	54816797	54816997	+	1	NA	NA	NA	-19	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.195000	0.796020	
mm_65737.1	chr7	28386027	28386227	-	1	NA	NA	NA	6563	NM_026042	67224	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0.010000	0.572139	
mm_144206.1	chr18	9505422	9505622	+	1	NA	NA	NA	-55372	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.000000	0.432836	
mm_130528.1	chr15	98898421	98898621	-	1	NA	NA	NA	19	NM_007857	13363	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	0.045000	0.646766	
mm_10485.1	chr2	14763154	14763354	+	1	NA	NA	NA	42612	NR_028497	625342	Mm.484784	NR_028497		Gm13315	OTTMUSG00000011384	lactate dehydrogenase A pseudogene	pseudo	0.015000	0.502488	-33(CCTTATAAACAA,+,0.00)
mm_91326.1	chr10	25215650	25215850	-	1	NA	NA	NA	-15580	NM_001347460	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.000000	0.452736	
mm_138332.1	chr17	34894565	34894765	+	1	NA	NA	NA	106	NM_198886	193736	Mm.161119	NM_198886	ENSMUSG00000049823	Zbtb12	BC020447|Bat-9|Bat9|G10|NG35	zinc finger and BTB domain containing 12	protein-coding	0.135000	0.805970	
mm_156184.1	chrX	133859599	133859799	+	1	NA	NA	NA	8691	NM_022322	64103	Mm.46221	NM_022322	ENSMUSG00000031250	Tnmd	1110017I01Rik|Bricd4|ChM1L|TeM	tenomodulin	protein-coding	0.015000	0.462687	
mm_51232.1	chr6	71374482	71374682	+	1	NA	NA	NA	1155	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.025000	0.552239	
mm_134805.1	chr16	24393558	24393758	-	1	NA	NA	NA	-3	NR_037954	68841	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	0.150000	0.805970	
mm_89921.1	chr10	111211485	111211685	+	1	NA	NA	NA	46783	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.010000	0.472637	
mm_123279.1	chr14	61410985	61411185	-	1	NA	NA	NA	28862	NM_008466	16648	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0.000000	0.432836	
mm_48590.1	chr5	143894950	143895150	-	1	NA	NA	NA	17	NM_025732	66729	Mm.439817	NM_025732	ENSMUSG00000029607	Ankrd61	4921520G13Rik	ankyrin repeat domain 61	protein-coding	0.010000	0.388060	
mm_157515.1	chrX	49787541	49787741	-	1	NA	NA	NA	602	NM_183336	209268	Mm.110505	NM_177591	ENSMUSG00000031111	Igsf1	5330413N23|5530402E03|AI747649|InhBP/p120|mKIAA0364	immunoglobulin superfamily, member 1	protein-coding	0.015000	0.507463	
mm_133656.1	chr16	91818187	91818387	+	1	NA	NA	NA	88916	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.010000	0.378109	
mm_158122.1	chrX	102505015	102505215	-	1	NA	NA	NA	43	NM_001313742	70315	Mm.328128	NM_027382	ENSMUSG00000067567	Hdac8	2610007D20Rik	histone deacetylase 8	protein-coding	0.040000	0.577114	
mm_79260.1	chr9	50753002	50753202	+	1	NA	NA	NA	131	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.015000	0.507463	
mm_154721.1	chrX	9272683	9272883	+	1	NA	NA	NA	-1	NM_023500	22439	Mm.56468	NM_023500	ENSMUSG00000015342	Xk	1810038K19Rik|XRG1|Xkh	X-linked Kx blood group	protein-coding	0.150000	0.786070	
mm_78267.1	chr9	22002702	22002902	+	1	NA	NA	NA	-168	NM_029939	77609	Mm.159953	NM_029939	ENSMUSG00000039632	Ccdc151	AI644415|C330001K17Rik|b2b1885Clo	coiled-coil domain containing 151	protein-coding	0.090000	0.597015	
mm_5786.1	chr1	51852722	51852922	-	1	NA	NA	NA	63156	NM_001290982	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.000000	0.402985	
mm_20304.1	chr2	127143222	127143422	-	1	NA	NA	NA	135	NM_001163527	73338	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	0.080000	0.601990	73(GTCTCTTTAAGA,-,0.00)
mm_122021.1	chr14	28308626	28308826	-	1	NA	NA	NA	-196747	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.005000	0.422886	
mm_18766.1	chr2	73463820	73464020	-	1	NA	NA	NA	-10031	NM_001289722	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.015000	0.537313	
mm_158227.1	chrX	106219544	106219744	-	1	NA	NA	NA	198	NM_001001176	407786	Mm.19440	NM_001001176	ENSMUSG00000047242	Taf9b	BC066223|Taf9l	TATA-box binding protein associated factor 9B	protein-coding	0.090000	0.666667	
mm_137289.1	chr17	24739962	24740162	+	1	NA	NA	NA	3469	NM_001346668	27361	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	0.015000	0.557214	
mm_58912.1	chr7	17672174	17672374	+	1	NA	NA	NA	-39	NR_002857	232919	Mm.153893	NR_002857	ENSMUSG00000108558	Psg-ps1	AV036018|Cea-6|Cea6	pregnancy specific glycoprotein pseudogene 1	pseudo	0.000000	0.457711	
mm_80627.1	chr9	89066873	89067073	+	1	NA	NA	NA	25862	NM_001170884	666747	Mm.425592	NM_001170884	ENSMUSG00000079162	Trim43b	EG666747|Gm8269	tripartite motif-containing 43B	protein-coding	0.055000	0.577114	-33(AACTATAAAGGG,-,0.00),4(TCTTTTAGGCCG,+,0.00)
mm_100048.1	chr11	115163307	115163507	+	1	NA	NA	NA	66	NM_012030	26941	Mm.27842	NM_012030	ENSMUSG00000020733	Slc9a3r1	EBP-50|NHE-RF|NHERF-1|NHERF1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1	protein-coding	0.115000	0.701493	
mm_158026.1	chrX	96166903	96167103	-	1	NA	NA	NA	70958	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.005000	0.462687	
mm_99198.1	chr11	101015952	101016152	+	1	NA	NA	NA	6600	NM_001243051	11975	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0.000000	0.338308	
mm_64168.1	chr7	141447726	141447926	+	1	NA	NA	NA	176	NM_026020	67186	Mm.380435	NM_026020	ENSMUSG00000025508	Rplp2	2700049I22Rik	ribosomal protein, large P2	protein-coding	0.070000	0.636816	
mm_113266.1	chr13	28951472	28951672	+	1	NA	NA	NA	2110	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.010000	0.358209	
mm_27044.1	chr3	27153771	27153971	-	1	NA	NA	NA	7	NM_001177626	13605	Mm.261453	NM_007900	ENSMUSG00000027699	Ect2	AI528536|mKIAA4037	ect2 oncogene	protein-coding	0.075000	0.587065	6(GCTCTTAGAGAG,+,0.00)
mm_114893.1	chr13	94359390	94359590	+	1	NA	NA	NA	530	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.040000	0.507463	
mm_131958.1	chr16	24486991	24487191	+	1	NA	NA	NA	39000	NM_001145952	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.005000	0.437811	
mm_2389.1	chr1	93509041	93509241	+	1	NA	NA	NA	-2963	NM_145519	227377	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	0.005000	0.472637	
mm_7923.1	chr1	133800962	133801162	-	1	NA	NA	NA	-47315	NM_213616	381290	Mm.188617	NM_213616	ENSMUSG00000026463	Atp2b4	Pmca4	ATPase, Ca++ transporting, plasma membrane 4	protein-coding	0.045000	0.621891	
mm_71166.1	chr8	40546275	40546475	+	1	NA	NA	NA	-30528	NM_001271542	18983	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0.010000	0.412935	
mm_9737.1	chr1	180245841	180246041	-	1	NA	NA	NA	9	NM_011183	19165	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.020000	0.472637	
mm_146719.1	chr18	15064029	15064229	-	1	NA	NA	NA	-547	NM_001142731	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.095000	0.756219	
mm_50467.1	chr6	48977061	48977261	+	1	NA	NA	NA	2018	NM_001029987	243376	Mm.244112	NM_001029987	ENSMUSG00000068536	Doxl2	-	diamine oxidase-like protein 2	protein-coding	0.005000	0.452736	-31(GTTTTTATGGCC,+,0.00)
mm_70879.1	chr8	25198754	25198954	+	1	NA	NA	NA	2688	NM_199323	320165	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.000000	0.532338	
mm_113111.1	chr13	24416815	24417015	+	1	NA	NA	NA	1793	NM_001284520	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.030000	0.512438	-99(GGCTTTTAAAAG,-,0.00),-98(GCTTTTAAAAGA,+,0.00),-98(GCTTTTAAAAGA,-,0.00),-97(CTTTTAAAAGAG,+,0.00)
mm_105634.1	chr11	106998344	106998544	-	1	NA	NA	NA	1081	NM_010655	16647	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.020000	0.388060	69(GTGTATAAAAAC,-,0.00)
mm_67643.1	chr7	84444435	84444635	-	1	NA	NA	NA	-34497	NM_007488	11864	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding	0.000000	0.432836	
mm_28938.1	chr3	98882154	98882354	-	1	NA	NA	NA	10976	NM_019545	56185	Mm.281874	NM_019545	ENSMUSG00000027870	Hao2	AI325478|Hao-2|Hao3|Haox3	hydroxyacid oxidase 2	protein-coding	0.015000	0.462687	
mm_48552.1	chr5	142929008	142929208	-	1	NA	NA	NA	-22354	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.040000	0.621891	-88(CCTTTTATGGAC,+,0.00)
mm_7939.1	chr1	133914659	133914859	-	1	NA	NA	NA	6642	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.035000	0.577114	
mm_44903.1	chr5	35652517	35652717	-	1	NA	NA	NA	27163	NM_001042615	78558	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.005000	0.592040	
mm_154557.1	chrM	15974	16174	-	1	NA	NA	NA	NA	NA									0.015000	0.388060	
mm_110626.1	chr12	57197169	57197369	-	1	NA	NA	NA	203	NM_172577	217593	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0.035000	0.542289	
mm_64366.1	chr7	142434851	142435051	+	1	NA	NA	NA	-26	NM_001285857	55925	Mm.213002	NM_018802	ENSMUSG00000031098	Syt8	-	synaptotagmin VIII	protein-coding	0.010000	0.577114	
mm_141344.1	chr17	28558336	28558536	-	1	NA	NA	NA	65	NR_105935	102465585		NR_105935	ENSMUSG00000099152	Mir6969	Gm27305|mmu-mir-6969	microRNA 6969	ncRNA	0.020000	0.562189	
mm_75895.1	chr8	70897315	70897515	-	1	NA	NA	NA	28	NM_029751	76808	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	0.085000	0.611940	
mm_49613.1	chr6	30747273	30747473	+	1	NA	NA	NA	6074	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.383085	
mm_62728.1	chr7	110777575	110777775	+	1	NA	NA	NA	5071	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.020000	0.537313	
mm_11860.1	chr2	48814049	48814249	+	1	NA	NA	NA	40	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.150000	0.761194	
mm_54850.1	chr6	42590940	42591140	-	1	NA	NA	NA	6332	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.328358	
mm_22447.1	chr2	181697741	181697941	-	1	NA	NA	NA	601	NM_199023	277496	Mm.212749	NM_199023	ENSMUSG00000045794	Lkaaear1	4930526D03Rik|Gm692	LKAAEAR motif containing 1 (IKAAEAR murine motif)	protein-coding	0.020000	0.452736	
mm_57381.1	chr6	124814192	124814392	-	1	NA	NA	NA	4	NM_009415	21991	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.050000	0.597015	
mm_69058.1	chr7	126897139	126897339	-	1	NA	NA	NA	1039	NM_026827	68742	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0.010000	0.557214	
mm_16152.1	chr2	172345538	172345738	+	1	NA	NA	NA	61	NM_025912	67017	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	0.095000	0.726368	
mm_105073.1	chr11	100759903	100760103	-	1	NA	NA	NA	-225	NM_001081194	380728	Mm.297539	NM_001081194	ENSMUSG00000035355	Kcnh4	BEC2	potassium voltage-gated channel, subfamily H (eag-related), member 4	protein-coding	0.065000	0.656716	
mm_33391.1	chr4	129811564	129811764	+	1	NA	NA	NA	-8815	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.005000	0.432836	
mm_74255.1	chr8	124862961	124863161	+	1	NA	NA	NA	28	NM_010322	14712	Mm.29114	NM_010322	ENSMUSG00000031985	Gnpat	AU019525|D1Ertd819e|DHAPAT	glyceronephosphate O-acyltransferase	protein-coding	0.120000	0.726368	
mm_128876.1	chr15	73040670	73040870	-	1	NA	NA	NA	15042	NM_029640	76510	Mm.158902	NM_029640	ENSMUSG00000047921	Trappc9	1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|Nibp|TRS130|mKIAA1882	trafficking protein particle complex 9	protein-coding	0.015000	0.442786	
mm_155433.1	chrX	73493198	73493398	+	1	NA	NA	NA	9697	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.010000	0.532338	
mm_168735.1	chr12	115120128	115120328	-	1	NA	NA	NA	575566	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.005000	0.437811	
mm_51348.1	chr6	72555688	72555888	+	1	NA	NA	NA	6141	NM_001271395	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.025000	0.616915	
mm_116599.1	chr13	48552225	48552425	-	1	NA	NA	NA	-14053	NR_029725	387244		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.025000	0.601990	
mm_163954.1	chr14	54476153	54476353	+	1	NA	NA	NA	153	NM_080726	140743	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	0.050000	0.601990	-65(GTATTTAAAGGG,+,0.00),-65(GTATTTAAAGGG,-,0.00)
mm_119490.1	chr14	47376253	47376453	+	1	NA	NA	NA	2493	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.010000	0.452736	
mm_70228.1	chr7	145283888	145284088	-	1	NA	NA	NA	23	NR_132644	233979	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.050000	0.621891	
mm_143344.1	chr17	66594523	66594723	-	1	NA	NA	NA	-1	NM_028998	74556	Mm.218634	NM_028998	ENSMUSG00000024105	Themis3	9130404H23Rik	thymocyte selection associated family member 3	protein-coding	0.025000	0.512438	
mm_12132.1	chr2	61653414	61653614	+	1	NA	NA	NA	-58180	NM_021526	59029	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0.015000	0.417910	22(ACTTTAATGGGG,+,0.00)
mm_40650.1	chr5	65107515	65107715	+	1	NA	NA	NA	47	NM_001347355	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.135000	0.776119	
mm_49812.1	chr6	36389298	36389498	+	1	NA	NA	NA	-1164	NR_015589	319472	Mm.226434	NR_015589	ENSMUSG00000073154	9330158H04Rik	-	RIKEN cDNA 9330158H04 gene	ncRNA	0.035000	0.577114	
mm_94347.1	chr11	4887664	4887864	+	1	NA	NA	NA	-3581	NR_105883	102466764		NR_105883	ENSMUSG00000098296	Mir6918	Gm27968|mmu-mir-6918	microRNA 6918	ncRNA	0.010000	0.417910	7(TCTTATATAGCT,+,0.00)
mm_11230.1	chr2	29802609	29802809	+	1	NA	NA	NA	29	NM_011989	26569	Mm.330113	NM_011989	ENSMUSG00000059316	Slc27a4	BB144259|FATP4	solute carrier family 27 (fatty acid transporter), member 4	protein-coding	0.110000	0.771144	
mm_109789.1	chr12	3249203	3249403	-	1	NA	NA	NA	13512	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.015000	0.393035	
mm_47935.1	chr5	135251126	135251326	-	1	NA	NA	NA	-179	NM_010246	14371	Mm.6256	NM_010246	ENSMUSG00000049551	Fzd9	mfz9	frizzled class receptor 9	protein-coding	0.150000	0.776119	
mm_158181.1	chrX	103981134	103981334	-	1	NA	NA	NA	50	NM_011276	19820	Mm.427762	NM_011276	ENSMUSG00000056537	Rlim	AL022832|AW743871|Ha1r|Rlim1|Rnf12	ring finger protein, LIM domain interacting	protein-coding	0.065000	0.601990	
mm_102206.1	chr11	54787554	54787754	-	1	NA	NA	NA	49	NM_178626	72729	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.120000	0.711443	
mm_66230.1	chr7	35067727	35067927	-	1	NA	NA	NA	-11261	NM_009884	12611	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.005000	0.502488	
mm_150251.1	chr19	34101020	34101220	+	1	NA	NA	NA	177	NM_023903	78753	Mm.195937	NM_023903	ENSMUSG00000056078	Lipm	4632427C23Rik|AW227514|Lipl3	lipase, family member M	protein-coding	0.015000	0.378109	
mm_29148.1	chr3	105932599	105932799	-	1	NA	NA	NA	-35	NM_001033780	433638	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	0.010000	0.417910	
mm_31705.1	chr4	62583477	62583677	+	1	NA	NA	NA	23730	NM_019492	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.105000	0.726368	
mm_89051.1	chr10	82874570	82874770	+	1	NA	NA	NA	8044	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.010000	0.477612	
mm_147891.1	chr18	65040636	65040836	-	1	NA	NA	NA	17209	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.005000	0.507463	
mm_12382.1	chr2	69862077	69862277	+	1	NA	NA	NA	615	NM_009278	20823	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	0.040000	0.482587	
mm_9555.1	chr1	173940534	173940734	-	1	NA	NA	NA	1858	NM_001302649	15950	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Mndal	interferon activated gene 203	protein-coding	0.010000	0.383085	41(TTTTTTAAACCC,+,0.00)
mm_57463.1	chr6	125191478	125191678	-	1	NA	NA	NA	8	NM_146171	68298	Mm.257590	NM_146171	ENSMUSG00000038252	Ncapd2	2810406C15Rik|2810465G24Rik|CAP-D2|CNAP1|mKIAA0159	non-SMC condensin I complex, subunit D2	protein-coding	0.090000	0.616915	
mm_134204.1	chr16	11134542	11134742	-	1	NA	NA	NA	-110	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.115000	0.726368	
mm_163674.1	chr13	83571968	83572168	-	1	NA	NA	NA	-1539	NM_001347577	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.010000	0.517413	
mm_83597.1	chr9	48494318	48494518	-	1	NA	NA	NA	912	NM_001326355	67010	Mm.76911	NM_144948	ENSMUSG00000042396	Rbm7	1200007M24Rik|1500011D06Rik|AU041934|AW554393	RNA binding motif protein 7	protein-coding	0.010000	0.407960	-75(CTTCCTAAAAGG,-,0.00)
mm_111656.1	chr12	102878329	102878529	-	1	NA	NA	NA	-23	NM_172806	238386	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	0.135000	0.761194	
mm_24854.1	chr3	95871510	95871710	+	1	NA	NA	NA	88	NR_040446	100042889	Mm.440109	NR_040446	ENSMUSG00000080727	C920021L13Rik	-	RIKEN cDNA C920021L13 gene	ncRNA	0.100000	0.626866	
mm_29772.1	chr3	127240694	127240894	-	1	NA	NA	NA	79489	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.005000	0.343284	
mm_59742.1	chr7	28818368	28818568	+	1	NA	NA	NA	-6870	NM_016772	51798	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.035000	0.567164	
mm_66971.1	chr7	63887547	63887747	-	1	NA	NA	NA	-29210	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.010000	0.368159	
mm_139628.1	chr17	57367203	57367403	+	1	NA	NA	NA	8617	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.010000	0.412935	78(CTCTTTTAAAAG,-,0.00),80(CTTTTAAAAGTA,+,0.00)
mm_100180.1	chr11	116624319	116624519	+	1	NA	NA	NA	-167	NM_001167680	217344	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.055000	0.582090	-6(CCACTTATGGCC,+,0.00)
mm_110198.1	chr12	27340530	27340730	-	1	NA	NA	NA	2088	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.010000	0.328358	
mm_145238.1	chr18	50278287	50278487	+	1	NA	NA	NA	18	NM_001004061	225497	Mm.329435	NM_001004061	ENSMUSG00000035420	Fam170a	Gm93|Znfd	family with sequence similarity 170, member A	protein-coding	0.005000	0.447761	
mm_47465.1	chr5	123670984	123671184	-	1	NA	NA	NA	13277	NM_019765	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.025000	0.557214	
mm_47391.1	chr5	123015852	123016052	-	1	NA	NA	NA	878	NM_175423	109305	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.025000	0.497512	
mm_84874.1	chr9	79718490	79718690	-	1	NA	NA	NA	132	NM_001290308	12816	Mm.3819	NM_007730	ENSMUSG00000032332	Col12a1	-	collagen, type XII, alpha 1	protein-coding	0.105000	0.691542	
mm_137365.1	chr17	25453631	25453831	+	1	NA	NA	NA	-17859	NM_027951	71840	Mm.282330	NM_027951	ENSMUSG00000024175	Tekt4	1700010L19Rik	tektin 4	protein-coding	0.010000	0.601990	
mm_146198.1	chr18	76241601	76241801	+	1	NA	NA	NA	0	NM_010754	17126	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0.185000	0.830846	
mm_57006.1	chr6	121103426	121103626	-	1	NA	NA	NA	-21899	NR_138097	194401	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0.035000	0.547264	45(GCCTTTCTAGGC,+,0.00)
mm_107044.1	chr12	15811245	15811445	+	1	NA	NA	NA	5440	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.005000	0.512438	
mm_165214.1	chr2	38165978	38166178	-	1	NA	NA	NA	121306	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.020000	0.412935	
mm_42695.1	chr5	119836769	119836969	+	1	NA	NA	NA	2206	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.045000	0.547264	
mm_53186.1	chr6	125434230	125434430	+	1	NA	NA	NA	-53826	NM_198604	213522	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.015000	0.452736	
mm_39950.1	chr5	32055149	32055349	+	1	NA	NA	NA	-81223	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.015000	0.383085	
mm_136411.1	chr16	93794945	93795145	-	1	NA	NA	NA	-37076	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.020000	0.557214	
mm_111400.1	chr12	90969686	90969886	-	1	NA	NA	NA	-76062	NR_045858	71349	Mm.442093	NR_045858		5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	0.000000	0.522388	
mm_82765.1	chr9	26919993	26920193	-	1	NA	NA	NA	2988	NM_001281475	382064	Mm.335028	NM_001177509	ENSMUSG00000079644	Gm1110	-	predicted gene 1110	protein-coding	0.010000	0.402985	
mm_99910.1	chr11	109845733	109845933	+	1	NA	NA	NA	-45	NR_045909	73257	Mm.250442	NR_045909	ENSMUSG00000087393	1700023C21Rik	-	RIKEN cDNA 1700023C21 gene	ncRNA	0.020000	0.487562	
mm_21922.1	chr2	166905795	166905995	-	1	NA	NA	NA	-201	NM_023565	110750	Mm.22417	NM_023565	ENSMUSG00000002718	Cse1l	2610100P18Rik|AA407533|Capts|Cas|Xpo2	chromosome segregation 1-like (S. cerevisiae)	protein-coding	0.065000	0.587065	
mm_70458.1	chr8	11822208	11822408	+	1	NA	NA	NA	-18213	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	0.000000	0.298507	1(CCTTTTAAAAAT,+,0.00)
mm_11861.1	chr2	48814098	48814298	+	1	NA	NA	NA	89	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.140000	0.751244	
mm_170383.1	chr18	60211980	60212180	+	1	NA	NA	NA	3	NM_001033767	240327	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.005000	0.477612	
mm_107713.1	chr12	55836287	55836487	+	1	NA	NA	NA	21	NM_001037756	52592	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0.095000	0.696517	
mm_48412.1	chr5	140262467	140262667	-	1	NA	NA	NA	58985	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.010000	0.467662	
mm_100027.1	chr11	114908511	114908711	+	1	NA	NA	NA	18570	NM_170758	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.000000	0.472637	
mm_156977.1	chrX	7188543	7188743	-	1	NA	NA	NA	71	NM_016691	12728	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	0.035000	0.502488	
mm_55638.1	chr6	72333369	72333569	-	1	NA	NA	NA	11706	NM_138592	28035	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	0.010000	0.452736	
mm_98783.1	chr11	96849780	96849980	+	1	NA	NA	NA	4	NM_019877	56358	Mm.22144	NM_019877	ENSMUSG00000018672	Copz2	1110012D12Rik|zeta2-COP	coatomer protein complex, subunit zeta 2	protein-coding	0.125000	0.796020	
mm_2646.1	chr1	125438139	125438339	+	1	NA	NA	NA	-2512	NM_001205386	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.010000	0.407960	
mm_152769.1	chr19	20954172	20954372	-	1	NA	NA	NA	-70	NM_028953	13409	Mm.219585	NM_028953	ENSMUSG00000024749	Tmc1	4933416G09Rik|Beethoven|Bth|CWEA1|dn	transmembrane channel-like gene family 1	protein-coding	0.005000	0.427861	
mm_44311.1	chr5	9161514	9161714	-	1	NA	NA	NA	162	NM_001110327	23857	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0.080000	0.661692	
mm_45104.1	chr5	44782442	44782642	-	1	NA	NA	NA	17204	NM_001347349	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0.005000	0.482587	
mm_33603.1	chr4	132579319	132579519	+	1	NA	NA	NA	15352	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.025000	0.447761	
mm_56636.1	chr6	113077144	113077344	-	1	NA	NA	NA	0	NR_027010	14910	Mm.280950	NR_027008	ENSMUSG00000086429	Gt(ROSA)26Sor	AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26|Thumpd3as1	gene trap ROSA 26, Philippe Soriano	ncRNA	0.105000	0.726368	
mm_34475.1	chr4	148332209	148332409	+	1	NA	NA	NA	-44344	NM_001083342	242748	Mm.33873	NM_001083342	ENSMUSG00000041544	Ptchd2	Disp3|G630052C06Rik|RNDEu-2	patched domain containing 2	protein-coding	0.000000	0.437811	
mm_61577.1	chr7	79841734	79841934	+	1	NA	NA	NA	518	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.035000	0.537313	
mm_68191.1	chr7	104353261	104353461	-	1	NA	NA	NA	-3	NM_001146007	319236	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	0.020000	0.437811	
mm_105743.1	chr11	109366895	109367095	-	1	NA	NA	NA	-3341	NR_038097	100036768	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	OTTMUSG00000003456	predicted gene 11696	ncRNA	0.025000	0.472637	
mm_48140.1	chr5	137150260	137150460	-	1	NA	NA	NA	-34153	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.492537	
mm_127241.1	chr15	99591043	99591243	+	1	NA	NA	NA	115	NM_009701	11830	Mm.45580	NM_009701	ENSMUSG00000044217	Aqp5	-	aquaporin 5	protein-coding	0.180000	0.830846	-32(CTCTATATAGCG,+,0.00)
mm_63496.1	chr7	127777295	127777495	+	1	NA	NA	NA	6	NM_178029	233904	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	0.155000	0.781095	
mm_21322.1	chr2	157099404	157099604	-	1	NA	NA	NA	12449	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.000000	0.402985	
mm_79592.1	chr9	58279979	58280179	+	1	NA	NA	NA	26915	NM_026942	69106	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.005000	0.502488	
mm_104461.1	chr11	95076549	95076749	-	1	NA	NA	NA	65	NM_013565	16400	Mm.57035	NM_013565	ENSMUSG00000001507	Itga3	AA407068|CD49C|GAPB3	integrin alpha 3	protein-coding	0.080000	0.666667	
mm_91176.1	chr10	20724957	20725157	-	1	NA	NA	NA	21	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.055000	0.641791	
mm_130847.1	chr15	101929179	101929379	-	1	NA	NA	NA	-4544	NM_008475	16682	Mm.46425	NM_008475	ENSMUSG00000059668	Krt4	AW108092|K4|Krt-2.4|Krt2-4	keratin 4	protein-coding	0.035000	0.562189	
mm_125862.1	chr15	75222443	75222643	+	1	NA	NA	NA	-45878	NM_008530	17071	Mm.377095	NM_008530	ENSMUSG00000022583	Ly6f	-	lymphocyte antigen 6 complex, locus F	protein-coding	0.005000	0.358209	
mm_123606.1	chr14	68087254	68087454	-	1	NA	NA	NA	3470	NM_010910	18039	Mm.1956	NM_010910	ENSMUSG00000022055	Nefl	AI847934|CMT2E|NF-L|NF68|Nfl	neurofilament, light polypeptide	protein-coding	0.000000	0.442786	
mm_91348.1	chr10	27133913	27134113	-	1	NA	NA	NA	-255853	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	0.020000	0.477612	
mm_43281.1	chr5	131753592	131753792	+	1	NA	NA	NA	-126577	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.000000	0.467662	
mm_151681.1	chr19	4269002	4269202	-	1	NA	NA	NA	70	NM_198113	245857	Mm.248388	NM_198113	ENSMUSG00000034616	Ssh3	BC028922|SSH-3|mSSH-3L	slingshot homolog 3 (Drosophila)	protein-coding	0.065000	0.646766	
mm_33492.1	chr4	130823358	130823558	+	1	NA	NA	NA	30921	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.010000	0.542289	
mm_56914.1	chr6	119330712	119330912	-	1	NA	NA	NA	-46	NM_172492	211187	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	0.085000	0.641791	
mm_17076.1	chr2	22775172	22775372	-	1	NA	NA	NA	945	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.030000	0.487562	
mm_150032.1	chr19	29375620	29375820	+	1	NA	NA	NA	8282	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.010000	0.402985	65(ATTTTTAAAGAC,+,0.00)
mm_114009.1	chr13	52606824	52607024	+	1	NA	NA	NA	10042	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.005000	0.477612	
mm_28811.1	chr3	96259633	96259833	-	1	NA	NA	NA	3584	NM_033596	97122	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0.015000	0.497512	
mm_88541.1	chr10	78542561	78542761	+	1	NA	NA	NA	-31839	NM_173751	216136	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0.050000	0.542289	
mm_90327.1	chr10	127078802	127079002	+	1	NA	NA	NA	-5	NM_001301014	216439	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.075000	0.696517	
mm_19073.1	chr2	77816619	77816819	-	1	NA	NA	NA	97	NM_178723	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.165000	0.810945	
mm_85246.1	chr9	99035642	99035842	-	1	NA	NA	NA	-52	NM_001080776	382097	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	0.035000	0.587065	
mm_46371.1	chr5	103647399	103647599	-	1	NA	NA	NA	8225	NM_028824	74218	Mm.159141	NM_028824	ENSMUSG00000029320	1700016H13Rik	-	RIKEN cDNA 1700016H13 gene	protein-coding	0.010000	0.487562	-65(CCTCTTAGAGGT,+,0.00)
mm_85077.1	chr9	91362518	91362718	-	1	NA	NA	NA	3181	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.070000	0.512438	
mm_156254.1	chrX	136707954	136708154	+	1	NA	NA	NA	-11	NM_146236	237052	Mm.40713	NM_146236	ENSMUSG00000049536	Tceal1	0610011M09Rik|BC011290|P21|SIIR|pp21	transcription elongation factor A (SII)-like 1	protein-coding	0.035000	0.537313	
mm_103075.1	chr11	69894700	69894900	-	1	NA	NA	NA	739	NM_153788	216859	Mm.288671	NM_153788	ENSMUSG00000001588	Acap1	Centb1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein-coding	0.015000	0.582090	
mm_143031.1	chr17	56609729	56609929	-	1	NA	NA	NA	-58	NM_153152	224904	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0.060000	0.557214	
mm_14127.1	chr2	126034542	126034742	+	1	NA	NA	NA	-16	NM_008008	14178	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0.030000	0.422886	
mm_86930.1	chr10	24151056	24151256	+	1	NA	NA	NA	1839	NM_016797	53331	Mm.248042	NM_016797	ENSMUSG00000019998	Stx7	AI315064|AI317144|AW107239|Syn7	syntaxin 7	protein-coding	0.010000	0.427861	
mm_45768.1	chr5	86917222	86917422	-	1	NA	NA	NA	9181	NM_152811	71773	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0.000000	0.313433	
mm_46491.1	chr5	105132247	105132447	-	1	NA	NA	NA	7205	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.368159	
mm_42084.1	chr5	110176869	110177069	+	1	NA	NA	NA	268	NM_008146	269682	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	0.075000	0.666667	
mm_123028.1	chr14	55511118	55511318	-	1	NA	NA	NA	-142	NM_009947	12891	Mm.5249	NM_009947	ENSMUSG00000022212	Cpne6	AU067659|BB076446	copine VI	protein-coding	0.025000	0.631841	
mm_167970.1	chrX	152584112	152584312	+	1	NA	NA	NA	20878	NM_001199311	635396	Mm.485766	NM_001199311	ENSMUSG00000091863	Cldn34a	Gm7157	claudin 34A	protein-coding	0.000000	0.383085	
mm_65141.1	chr7	19573291	19573491	-	1	NA	NA	NA	-48	NM_027189	69731	Mm.24540	NM_027189	ENSMUSG00000044709	Gemin7	2400008I04Rik|AI120175|AI461688	gem (nuclear organelle) associated protein 7	protein-coding	0.115000	0.736318	
mm_5221.1	chr1	14299610	14299810	-	1	NA	NA	NA	10489	NM_001310459	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.020000	0.398010	
mm_60430.1	chr7	44476702	44476902	+	1	NA	NA	NA	6455	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.417910	
mm_134496.1	chr16	18811525	18811725	-	1	NA	NA	NA	14	NM_001161623	12544	Mm.1248	NM_009862	ENSMUSG00000000028	Cdc45	Cdc45l	cell division cycle 45	protein-coding	0.065000	0.552239	
mm_122906.1	chr14	54953734	54953934	-	1	NA	NA	NA	-4692	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.035000	0.547264	
mm_11936.1	chr2	52857671	52857871	+	1	NA	NA	NA	-97	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.165000	0.786070	
mm_9085.1	chr1	168432018	168432218	-	1	NA	NA	NA	51	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.020000	0.577114	
mm_134297.1	chr16	14317245	14317445	-	1	NA	NA	NA	-13	NM_025345	66086	Mm.42072	NM_025345	ENSMUSG00000022677	Fopnl	0610037P05Rik	Fgfr1op N-terminal like	protein-coding	0.100000	0.611940	
mm_21721.1	chr2	164638723	164638923	-	1	NA	NA	NA	-21	NM_001012723	277345	Mm.247244	NM_001012723	ENSMUSG00000070530	Wfdc16	BC043944|WAP16	WAP four-disulfide core domain 16	protein-coding	0.010000	0.437811	
mm_24999.1	chr3	97651584	97651784	+	1	NA	NA	NA	-6528	NM_182997	108097	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.035000	0.567164	
mm_67538.1	chr7	81454658	81454858	-	1	NA	NA	NA	0	NM_001252525	12877	Mm.273122	NM_007755	ENSMUSG00000025586	Cpeb1	AU024112|Cpeb|mCPEB	cytoplasmic polyadenylation element binding protein 1	protein-coding	0.155000	0.761194	-33(AGCTTTATAAGC,-,0.00),-31(CTTTATAAGCCG,+,0.00)
mm_157351.1	chrX	36989594	36989794	-	1	NA	NA	NA	1	NM_001177324	56526	Mm.260036	NM_019942	ENSMUSG00000050379	Sept6	2810035H17Rik|C920001C06Rik|Sep6|mKIAA0128	septin 6	protein-coding	0.070000	0.686567	
mm_118282.1	chr13	112753390	112753590	-	1	NA	NA	NA	-47287	NM_008903	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.015000	0.522388	
mm_72267.1	chr8	75097212	75097412	+	1	NA	NA	NA	3694	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.025000	0.527363	
mm_130288.1	chr15	97008608	97008808	-	1	NA	NA	NA	47248	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.020000	0.457711	
mm_94745.1	chr11	21100941	21101141	+	1	NA	NA	NA	9717	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.005000	0.378109	
mm_93978.1	chr10	127341789	127341989	-	1	NA	NA	NA	-310	NM_010296	14632	Mm.391450	NM_010296	ENSMUSG00000025407	Gli1	AV235269|Zfp-5|Zfp5	GLI-Kruppel family member GLI1	protein-coding	0.050000	0.616915	
mm_144859.1	chr18	36709115	36709315	+	1	NA	NA	NA	-13290	NM_172831	240216	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0.000000	0.398010	
mm_43926.1	chr5	144855115	144855315	+	1	NA	NA	NA	41601	NR_106006	102465629		NR_106006	ENSMUSG00000098822	Mir7039	Gm27824|mmu-mir-7039	microRNA 7039	ncRNA	0.005000	0.437811	
mm_100578.1	chr11	120767236	120767436	+	1	NA	NA	NA	16868	NM_009053	19719	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.015000	0.582090	
mm_110855.1	chr12	73287097	73287297	-	1	NA	NA	NA	349	NM_001037717	625098	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0.025000	0.572139	
mm_94488.1	chr11	6658442	6658642	+	1	NA	NA	NA	9	NM_019511	56089	Mm.39884	NM_019511	ENSMUSG00000041046	Ramp3	AI850306	receptor (calcitonin) activity modifying protein 3	protein-coding	0.050000	0.631841	
mm_110333.1	chr12	35534916	35535116	-	1	NA	NA	NA	-27	NM_001314027	11622	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0.130000	0.776119	
mm_133156.1	chr16	70352166	70352366	+	1	NA	NA	NA	38317	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.000000	0.398010	
mm_123738.1	chr14	70184783	70184983	-	1	NA	NA	NA	-7211	NM_145978	213019	Mm.283968	NM_145978	ENSMUSG00000022090	Pdlim2	4732462F18Rik|Slim	PDZ and LIM domain 2	protein-coding	0.025000	0.611940	
mm_90599.1	chr10	128322360	128322560	+	1	NA	NA	NA	1	NM_019953	56530	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy FGF signaling regulator 2	protein-coding	0.075000	0.611940	
mm_45487.1	chr5	71095846	71096046	-	1	NA	NA	NA	-97	NM_008066	14395	Mm.5304	NM_008066	ENSMUSG00000000560	Gabra2	C630048P16Rik|Gabra-2	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2	protein-coding	0.065000	0.676617	
mm_116125.1	chr13	28951761	28951961	-	1	NA	NA	NA	1821	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.095000	0.587065	
mm_93265.1	chr10	95673375	95673575	-	1	NA	NA	NA	-109308	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.010000	0.442786	-78(CACTCTATAAGC,-,0.00)
mm_168431.1	chr11	33754909	33755109	-	1	NA	NA	NA	88576	NM_027398	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.060000	0.552239	
mm_38046.1	chr4	133967879	133968079	-	1	NA	NA	NA	12	NM_016957	15331	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	0.085000	0.631841	40(CGCTATAAAAAC,-,0.00),51(CTTTATAAACCC,+,0.00)
mm_137017.1	chr17	17838221	17838421	+	1	NA	NA	NA	7346	NM_001162909	75202	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0.080000	0.631841	
mm_103668.1	chr11	79086910	79087110	-	1	NA	NA	NA	59344	NM_013571	16706	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb	kinase suppressor of ras 1	protein-coding	0.040000	0.582090	-34(TGCCTTATAAAG,-,0.00),-32(CCTTATAAAGCG,+,0.00)
mm_59594.1	chr7	28137436	28137636	+	1	NA	NA	NA	8070	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.040000	0.557214	
mm_124537.1	chr14	122451167	122451367	-	1	NA	NA	NA	-121	NR_033326	328479	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.045000	0.651741	
mm_163519.1	chr12	114896623	114896823	-	1	NA	NA	NA	-383029	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.422886	-11(CACCCTAAAAAC,-,0.00)
mm_102031.1	chr11	51693364	51693564	-	1	NA	NA	NA	-4830	NM_025319	66050	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	0.000000	0.293532	63(CTCTTTTTAAGA,-,0.00)
mm_51389.1	chr6	77245147	77245347	+	1	NA	NA	NA	2530	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.035000	0.477612	
mm_55039.1	chr6	48987636	48987836	-	1	NA	NA	NA	875	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.025000	0.492537	
mm_105474.1	chr11	105936386	105936586	-	1	NA	NA	NA	7661	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.020000	0.582090	
mm_23020.1	chr3	34589929	34590129	+	1	NA	NA	NA	29648	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA	0.005000	0.442786	
mm_121456.1	chr14	120480105	120480305	+	1	NA	NA	NA	1744	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.005000	0.373134	
mm_57797.1	chr6	129284339	129284539	-	1	NA	NA	NA	-9070	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.015000	0.427861	-76(CTTCATATAAGG,-,0.00)
mm_96555.1	chr11	68901486	68901686	+	1	NA	NA	NA	-3	NR_003373	100034726	Mm.3229	NR_003373	ENSMUSG00000062353	Gm15772	ENSMUSG00000062353|OTTMUSG00000026108	ribosomal protein L26 pseudogene	pseudo	0.105000	0.587065	
mm_152408.1	chr19	10604260	10604460	-	1	NA	NA	NA	-102	NM_145496	225913	Mm.374868	NM_145496	ENSMUSG00000034371	Tkfc	BC021917|Dak	triokinase, FMN cyclase	protein-coding	0.020000	0.537313	
mm_9752.1	chr1	180808575	180808775	-	1	NA	NA	NA	4930	NM_008210	15078	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	H3.3A	H3 histone, family 3A	protein-coding	0.000000	0.293532	
mm_84409.1	chr9	65556542	65556742	-	1	NA	NA	NA	23445	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.015000	0.582090	
mm_106624.1	chr11	120825069	120825269	-	1	NA	NA	NA	-622	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.010000	0.567164	
mm_153956.1	chr19	47691917	47692117	-	1	NA	NA	NA	25	NM_007732	12821	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	0.025000	0.417910	
mm_147902.1	chr18	65381569	65381769	-	1	NA	NA	NA	12219	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.025000	0.537313	
mm_143646.1	chr17	79354993	79355193	-	1	NA	NA	NA	-2	NM_026514	260409	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	0.130000	0.781095	
mm_117259.1	chr13	64368139	64368339	-	1	NA	NA	NA	2281	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.020000	0.487562	
mm_59115.1	chr7	19822863	19823063	+	1	NA	NA	NA	-208	NM_033601	12051	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.040000	0.567164	
mm_169785.1	chr16	11403285	11403485	+	1	NA	NA	NA	-2263	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.020000	0.452736	
mm_38767.1	chr4	147904692	147904892	-	1	NA	NA	NA	-94	NM_001285923	170731	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0.100000	0.656716	
mm_42668.1	chr5	119671163	119671363	+	1	NA	NA	NA	30	NM_011535	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.090000	0.547264	
mm_88558.1	chr10	79497060	79497260	+	1	NA	NA	NA	28202	NM_001104537	625029	Mm.469865	NM_001104537	ENSMUSG00000091381	Vmn2r83	EG625029	vomeronasal 2, receptor 83	protein-coding	0.010000	0.422886	
mm_72639.1	chr8	84701364	84701564	+	1	NA	NA	NA	7	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.020000	0.621891	
mm_150306.1	chr19	34570542	34570742	+	1	NA	NA	NA	-12887	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.000000	0.452736	
mm_108760.1	chr12	89089355	89089555	+	1	NA	NA	NA	136065	NM_172544	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.000000	0.308458	
mm_94965.1	chr11	30831194	30831394	+	1	NA	NA	NA	-54064	NM_175490	237716	Mm.338361	NM_175490	ENSMUSG00000043999	Gpr75	-	G protein-coupled receptor 75	protein-coding	0.005000	0.348259	
mm_50667.1	chr6	51531275	51531475	+	1	NA	NA	NA	7472	NM_001127349	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.005000	0.427861	
mm_94580.1	chr11	11690221	11690421	+	1	NA	NA	NA	144	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.015000	0.562189	
mm_48244.1	chr5	137786151	137786351	-	1	NA	NA	NA	450	NM_144913	231803	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0.140000	0.691542	
mm_161159.1	chr13	27156676	27156876	+	1	NA	NA	NA	-23	NM_172156	215029	Mm.461202	NM_172156	ENSMUSG00000062201	Prl3d3	Ghd6|PL-Ig|Plig	prolactin family 3, subfamily d, member 3	protein-coding	0.010000	0.452736	
mm_127310.1	chr15	100228227	100228427	+	1	NA	NA	NA	468	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.165000	0.781095	
mm_140501.1	chr17	4281508	4281708	-	1	NA	NA	NA	-159506	NR_045462	78043	Mm.398313	NR_045462		4930548J01Rik	1700113K09Rik	RIKEN cDNA 4930548J01 gene	ncRNA	0.010000	0.472637	
mm_35552.1	chr4	41517186	41517386	-	1	NA	NA	NA	47	NM_001048005	73721	Mm.45614	NM_028624	ENSMUSG00000028441	1110017D15Rik	Cbe1|Smrp1	RIKEN cDNA 1110017D15 gene	protein-coding	0.005000	0.542289	38(GGCTATTTAGGG,-,0.00)
mm_81608.1	chr9	110665338	110665538	+	1	NA	NA	NA	8935	NM_028312	72654	Mm.249115	NM_028312	ENSMUSG00000019659	Ccdc12	2700094L05Rik|C76605	coiled-coil domain containing 12	protein-coding	0.010000	0.432836	
mm_59686.1	chr7	28440931	28441131	+	1	NA	NA	NA	94	NM_001039192	63986	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.005000	0.572139	
mm_136989.1	chr17	17374430	17374630	+	1	NA	NA	NA	198	NM_025934	67045	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2 (yeast)	protein-coding	0.070000	0.522388	-32(CCTTAAATACAG,+,0.00)
mm_57036.1	chr6	122339324	122339524	-	1	NA	NA	NA	233	NM_001042623	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.095000	0.641791	
mm_142743.1	chr17	48409648	48409848	-	1	NA	NA	NA	72	NM_001110832	18044	Mm.4929	NM_010913	ENSMUSG00000023994	Nfya	AA407810|Cbf-b|SEZ-10|SEZ10	nuclear transcription factor-Y alpha	protein-coding	0.100000	0.681592	
mm_10351.1	chr2	11689793	11689993	+	1	NA	NA	NA	-15400	NM_001271498	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.015000	0.462687	
mm_128870.1	chr15	72925617	72925817	-	1	NA	NA	NA	-115393	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.005000	0.527363	
mm_34341.1	chr4	143413667	143413867	+	1	NA	NA	NA	1341	NM_172877	242736	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding	0.000000	0.328358	
mm_77930.1	chr9	7353791	7353991	+	1	NA	NA	NA	6517	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.422886	
mm_172071.1	chr6	137280710	137280910	+	1	NA	NA	NA	28511	NM_011216	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.000000	0.562189	
mm_14638.1	chr2	136781785	136781985	+	1	NA	NA	NA	68435	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.005000	0.388060	
mm_50899.1	chr6	57580988	57581188	+	1	NA	NA	NA	96	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.055000	0.626866	
mm_119770.1	chr14	54174772	54174972	+	1	NA	NA	NA	79057	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.447761	
mm_122540.1	chr14	47418127	47418327	-	1	NA	NA	NA	180	NM_144553	218977	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	discs, large (Drosophila) homolog-associated protein 5	protein-coding	0.070000	0.547264	
mm_137569.1	chr17	27840034	27840234	+	1	NA	NA	NA	47	NM_011432	20630	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	0.070000	0.651741	
mm_93267.1	chr10	95722354	95722554	-	1	NA	NA	NA	-158287	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.020000	0.557214	
mm_17627.1	chr2	31035434	31035634	-	1	NA	NA	NA	53255	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.005000	0.393035	
mm_147878.1	chr18	64516456	64516656	-	1	NA	NA	NA	1	NM_027350	70223	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0.080000	0.577114	
mm_34427.1	chr4	145434606	145434806	+	1	NA	NA	NA	-29504	NR_002888	545700	Mm.389595	NR_002888	ENSMUSG00000052912	Smarca5-ps	9230115A19Rik|OTTMUSG00000011029	SWI/SNF related, matrix associated, actin depenent ragulator of chromatin, subfamily a, member 5, pseudogene	pseudo	0.000000	0.497512	
mm_156820.1	chrX	164140454	164140654	+	1	NA	NA	NA	74	NM_027286	70008	Mm.13451	NM_027286	ENSMUSG00000015405	Ace2	2010305L05Rik	angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	protein-coding	0.010000	0.417910	
mm_62116.1	chr7	96644058	96644258	+	1	NA	NA	NA	157391	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA	0.035000	0.522388	75(CTTTTAATAGTT,+,0.00)
mm_50487.1	chr6	48988528	48988728	+	1	NA	NA	NA	1767	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.015000	0.512438	
mm_145119.1	chr18	44344331	44344531	+	1	NA	NA	NA	10357	NM_001033621	58916	Mm.143804	NM_001033621	ENSMUSG00000024471	Myot	5530402I04Rik|Ttid	myotilin	protein-coding	0.010000	0.318408	
mm_61245.1	chr7	65803809	65804009	+	1	NA	NA	NA	-143	NR_045301	100503969	Mm.383527	NR_045301		1810008I18Rik	-	RIKEN cDNA 1810008I18 gene	ncRNA	0.020000	0.452736	
mm_105343.1	chr11	102997434	102997634	-	1	NA	NA	NA	2387	NR_105896	102466988		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.015000	0.582090	
mm_10435.1	chr2	14174401	14174601	+	1	NA	NA	NA	-23	NM_001081310	625286	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	0.005000	0.442786	23(GTGTTTATATGC,-,0.00)
mm_115300.1	chr13	112001813	112002013	+	1	NA	NA	NA	133977	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.015000	0.532338	
mm_93909.1	chr10	127030701	127030901	-	1	NA	NA	NA	13	NM_025537	66399	Mm.29900	NM_025537	ENSMUSG00000040521	Tsfm	2310050B20Rik|9430024O13Rik|EF-TS|EF-Tsmt	Ts translation elongation factor, mitochondrial	protein-coding	0.160000	0.736318	
mm_139615.1	chr17	57361066	57361266	+	1	NA	NA	NA	2480	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.010000	0.437811	-88(CTCTTTAAAAAC,-,0.00)
mm_72411.1	chr8	81779825	81780025	+	1	NA	NA	NA	437363	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.020000	0.542289	
mm_56333.1	chr6	92642245	92642445	-	1	NA	NA	NA	63839	NM_001081146	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.005000	0.328358	
mm_55411.1	chr6	65021828	65022028	-	1	NA	NA	NA	-20739	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.010000	0.447761	
mm_1956.1	chr1	86359565	86359765	+	1	NA	NA	NA	91	NR_015507	319336	Mm.389155	NR_015507	ENSMUSG00000073627	C130036L24Rik	ENSMUSG00000073627	RIKEN cDNA C130036L24 gene	ncRNA	0.105000	0.686567	
mm_141520.1	chr17	31690325	31690525	-	1	NA	NA	NA	12494	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.010000	0.537313	-34(GCTTTAAGACCC,+,0.00)
mm_145500.1	chr18	60390835	60391035	+	1	NA	NA	NA	14906	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.000000	0.338308	
mm_38635.1	chr4	142460305	142460505	-	1	NA	NA	NA	-221004	NM_001109685	71529	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	0.015000	0.497512	
mm_77186.1	chr8	111854152	111854352	-	1	NA	NA	NA	58	NM_011801	23837	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	0.060000	0.592040	
mm_7231.1	chr1	93428125	93428325	-	1	NA	NA	NA	17476	NM_001301364	110611	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0.000000	0.477612	
mm_152925.1	chr19	28011423	28011623	-	1	NA	NA	NA	-357	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.095000	0.691542	
mm_12056.1	chr2	59314729	59314929	+	1	NA	NA	NA	71853	NR_040510	76676	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.000000	0.358209	
mm_93716.1	chr10	118889161	118889361	-	1	NA	NA	NA	-20358	NM_001014390	69181	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.005000	0.457711	
mm_9026.1	chr1	166409711	166409911	-	1	NA	NA	NA	17	NM_175170	71592	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	0.135000	0.761194	
mm_25059.1	chr3	98852621	98852821	+	1	NA	NA	NA	7073	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.020000	0.502488	
mm_161921.1	chr18	73677721	73677921	-	1	NA	NA	NA	25920	NM_008540	17128	Mm.100399	NM_008540	ENSMUSG00000024515	Smad4	AW743858|D18Wsu70e|DPC4|Madh4	SMAD family member 4	protein-coding	0.005000	0.343284	
mm_30104.1	chr3	138526141	138526341	-	1	NA	NA	NA	50	NM_007917	13684	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.035000	0.477612	
mm_37189.1	chr4	117473925	117474125	-	1	NA	NA	NA	23027	NM_025739	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.005000	0.422886	
mm_119371.1	chr14	41122622	41122822	+	1	NA	NA	NA	-9066	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.000000	0.497512	
mm_16861.1	chr2	11659701	11659901	-	1	NA	NA	NA	17009	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.010000	0.487562	
mm_127767.1	chr15	3219630	3219830	-	1	NA	NA	NA	-51037	NM_001042613	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.030000	0.393035	
mm_46236.1	chr5	99218236	99218436	-	1	NA	NA	NA	34591	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.005000	0.492537	
mm_118648.1	chr14	21622460	21622660	+	1	NA	NA	NA	92016	NM_001013826	435391	Mm.295860	NM_001013826	ENSMUSG00000063821	Dupd1	EG435391	dual specificity phosphatase and pro isomerase domain containing 1	protein-coding	0.005000	0.278607	33(ACCTATAAATGA,-,0.00)
mm_27494.1	chr3	54915721	54915921	-	1	NA	NA	NA	66	NM_177854	329641	Mm.51187	NM_177854	ENSMUSG00000056306	Sertm1	6030405A18Rik	serine rich and transmembrane domain containing 1	protein-coding	0.105000	0.686567	
mm_71106.1	chr8	35587739	35587939	+	1	NA	NA	NA	41	NM_001081279	52065	Mm.103246	NM_001081279	ENSMUSG00000070056	Mfhas1	2310066G09Rik|D8Ertd91e	malignant fibrous histiocytoma amplified sequence 1	protein-coding	0.175000	0.786070	
mm_120365.1	chr14	64440995	64441195	+	1	NA	NA	NA	-55	NM_001253712	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.030000	0.452736	-33(GTGCATAAAAAG,-,0.00),-31(GCATAAAAAGGC,+,0.00),2(ACCTATAAGAGG,-,0.00)
mm_134019.1	chr16	4880170	4880370	-	1	NA	NA	NA	-419	NM_145359	207740	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.045000	0.472637	
mm_95884.1	chr11	58103941	58104141	+	1	NA	NA	NA	-112	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.125000	0.691542	
mm_97743.1	chr11	80470724	80470924	+	1	NA	NA	NA	-6222	NM_009871	12569	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0.015000	0.437811	
mm_61588.1	chr7	80024765	80024965	+	1	NA	NA	NA	51	NM_001146000	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.045000	0.636816	
mm_85782.1	chr9	109058665	109058865	-	1	NA	NA	NA	486	NM_001012236	22040	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	0.030000	0.611940	
mm_48649.1	chr5	145855929	145856129	-	1	NA	NA	NA	23825	NM_007818	13112	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	0.010000	0.447761	
mm_127771.1	chr15	3279211	3279411	-	1	NA	NA	NA	8334	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.010000	0.572139	
mm_27825.1	chr3	79083506	79083706	-	1	NA	NA	NA	61281	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.477612	
mm_46159.1	chr5	96161988	96162188	-	1	NA	NA	NA	-98	NM_144910	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.140000	0.810945	
mm_153831.1	chr19	46318035	46318235	-	1	NA	NA	NA	8731	NM_001347454	73728	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.145000	0.796020	
mm_83346.1	chr9	44320160	44320360	-	1	NA	NA	NA	22	NM_027909	71764	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	0.120000	0.756219	-56(CTCCTTTAAGGG,-,0.00),-55(TCCTTTAAGGGC,+,0.00),-54(CCTTTAAGGGCG,+,0.00)
mm_122188.1	chr14	31640836	31641036	-	1	NA	NA	NA	29	NM_019975	56794	Mm.38887	NM_019975	ENSMUSG00000021884	Hacl1	1600020H07Rik|Hpcl|Phyh2	2-hydroxyacyl-CoA lyase 1	protein-coding	0.035000	0.537313	
mm_38292.1	chr4	136892439	136892639	-	1	NA	NA	NA	375	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.020000	0.616915	
mm_33736.1	chr4	134118396	134118596	+	1	NA	NA	NA	10257	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.015000	0.577114	
mm_124401.1	chr14	114945855	114946055	-	1	NA	NA	NA	-7	NR_126548	74982		NR_126548		1700100I10Rik	1700085D13Rik|4930481K08Rik	RIKEN cDNA 1700100I10 gene	ncRNA	0.025000	0.537313	
mm_141304.1	chr17	28211450	28211650	-	1	NA	NA	NA	3772	NM_027185	23853	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0.015000	0.557214	3(TTCTCTTAAAAG,-,0.00)
mm_76127.1	chr8	80879838	80880038	-	1	NA	NA	NA	541	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.125000	0.736318	
mm_12590.1	chr2	73584763	73584963	+	1	NA	NA	NA	-4525	NM_007389	11435	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	0.035000	0.611940	
mm_166760.1	chr6	129236021	129236221	+	1	NA	NA	NA	1924	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.005000	0.477612	
mm_109616.1	chr12	112760631	112760831	+	1	NA	NA	NA	76	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.005000	0.592040	
mm_4241.1	chr1	171389008	171389208	+	1	NA	NA	NA	148	NM_001005508	226652	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	0.020000	0.641791	
mm_131419.1	chr16	14706792	14706992	+	1	NA	NA	NA	1033	NM_011415	20583	Mm.4272	NM_011415	ENSMUSG00000022676	Snai2	Slug|Slugh|Snail2	snail family zinc finger 2	protein-coding	0.025000	0.532338	
mm_89656.1	chr10	97482297	97482497	+	1	NA	NA	NA	66	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.020000	0.452736	
mm_33296.1	chr4	128976885	128977085	+	1	NA	NA	NA	-14530	NM_001301841	242669	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.015000	0.432836	
mm_55882.1	chr6	83527252	83527452	-	1	NA	NA	NA	8899	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.015000	0.557214	
mm_15346.1	chr2	156065649	156065849	+	1	NA	NA	NA	536	NM_139151	245865	Mm.330713	NM_139151	ENSMUSG00000038180	Spag4	1700041K21Rik|MNCb-0953|Sun4|mKIAA4118	sperm associated antigen 4	protein-coding	0.130000	0.776119	
mm_62112.1	chr7	96593269	96593469	+	1	NA	NA	NA	208180	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA	0.000000	0.398010	
mm_123745.1	chr14	70191822	70192022	-	1	NA	NA	NA	324	NM_001271409	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.060000	0.676617	
mm_73165.1	chr8	95017645	95017845	+	1	NA	NA	NA	53	NM_173036	54672	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.035000	0.587065	
mm_14166.1	chr2	126636997	126637197	+	1	NA	NA	NA	-18419	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.015000	0.308458	55(CCTTATAGGCGG,+,0.00)
mm_157731.1	chrX	70477084	70477284	-	1	NA	NA	NA	-141	NM_001033328	236848	Mm.24569	NM_001033328	ENSMUSG00000073139	Tmem185a	-	transmembrane protein 185A	protein-coding	0.065000	0.616915	
mm_110776.1	chr12	70371588	70371788	-	1	NA	NA	NA	-24074	NM_001110203	94090	Mm.184012	NM_053167	ENSMUSG00000021071	Trim9	-	tripartite motif-containing 9	protein-coding	0.030000	0.442786	-34(CTGCATAAAAAG,-,0.00)
mm_92475.1	chr10	78169659	78169859	-	1	NA	NA	NA	9	NM_138601	28295	Mm.268691	NM_138601	ENSMUSG00000053329	D10Jhu81e	C21orf33|ES1	DNA segment, Chr 10, Johns Hopkins University 81 expressed	protein-coding	0.085000	0.676617	
mm_76643.1	chr8	93079841	93080041	-	1	NA	NA	NA	76	NM_001081372	382044	Mm.482549	NM_001081372	ENSMUSG00000078964	Ces1b	Gm5158	carboxylesterase 1B	protein-coding	0.000000	0.482587	
mm_155075.1	chrX	46155978	46156178	+	1	NA	NA	NA	172833	NR_045440	75133	Mm.417818	NR_045440	ENSMUSG00000085157	4930515L19Rik	-	RIKEN cDNA 4930515L19 gene	ncRNA	0.005000	0.293532	-48(CACTATAAAAGA,-,0.00)
mm_34321.1	chr4	141821645	141821845	+	1	NA	NA	NA	4260	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.030000	0.597015	
mm_63611.1	chr7	128203503	128203703	+	1	NA	NA	NA	-275	NR_045183	70973	Mm.441564	NR_045183	ENSMUSG00000108354	4931431B13Rik	1700108I23Rik|AA536668	RIKEN cDNA 4931431B13 gene	ncRNA	0.025000	0.552239	
mm_162351.1	chr1	55052188	55052388	+	1	NA	NA	NA	-482	NM_026424	67876	Mm.281019	NM_026424	ENSMUSG00000025981	Coq10b	1500041J02Rik|1700030I21Rik|9530077A17Rik|AV002237|AW742641	coenzyme Q10B	protein-coding	0.030000	0.482587	
mm_81332.1	chr9	108517034	108517234	+	1	NA	NA	NA	47	NM_175143	69232	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik	glutamine-rich 1	protein-coding	0.130000	0.686567	
mm_30893.1	chr4	32291608	32291808	+	1	NA	NA	NA	-125727	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.010000	0.522388	
mm_4335.1	chr1	171854980	171855180	+	1	NA	NA	NA	15383	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.278607	
mm_87544.1	chr10	53596870	53597070	+	1	NA	NA	NA	9	NM_025541	66403	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0.075000	0.562189	
mm_86692.1	chr10	18431360	18431560	+	1	NA	NA	NA	23785	NM_173390	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.005000	0.358209	
mm_30817.1	chr4	21776179	21776379	+	1	NA	NA	NA	9	NM_152825	77593	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	0.085000	0.696517	
mm_9697.1	chr1	178337651	178337851	-	1	NA	NA	NA	33	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.150000	0.706468	
mm_137424.1	chr17	26252809	26253009	+	1	NA	NA	NA	-1	NM_025881	66978	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	0.090000	0.572139	
mm_136015.1	chr16	76022207	76022407	-	1	NA	NA	NA	-100306	NR_040575	78215	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.010000	0.442786	
mm_12720.1	chr2	78214690	78214890	+	1	NA	NA	NA	-22757	NM_177843	329436	Mm.235448	NM_177843		Gm14461	A830093M07|OTTMUSG00000016703	predicted gene 14461	protein-coding	0.005000	0.388060	
mm_116321.1	chr13	37827138	37827338	-	1	NA	NA	NA	-155	NM_001039188	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.140000	0.756219	
mm_34252.1	chr4	141296165	141296365	+	1	NA	NA	NA	-4956	NM_010139	13836	Mm.2581	NM_010139	ENSMUSG00000006445	Epha2	AW545284|Eck|Myk2|Sek-2|Sek2	Eph receptor A2	protein-coding	0.045000	0.577114	
mm_9740.1	chr1	180263381	180263581	-	1	NA	NA	NA	-7181	NM_001128605	19165	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.005000	0.422886	-50(GGCCATTTGAGG,-,0.00)
mm_163611.1	chr13	51833477	51833677	+	1	NA	NA	NA	-13098	NM_011817	23882	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.020000	0.587065	
mm_4584.1	chr1	178318738	178318938	+	1	NA	NA	NA	-315	NM_025511	66359	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0.125000	0.701493	-65(CCCTCTAAGAGG,-,0.00)
mm_21852.1	chr2	165878841	165879041	-	1	NA	NA	NA	-504	NM_001291158	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.020000	0.492537	
mm_135885.1	chr16	64771031	64771231	-	1	NA	NA	NA	-192	NM_026273	67609	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	0.075000	0.597015	
mm_1026.1	chr1	58754789	58754989	+	1	NA	NA	NA	24337	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.015000	0.527363	4(GTATTTATAGTG,+,0.00)
mm_152525.1	chr19	11321480	11321680	-	1	NA	NA	NA	13115	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.000000	0.278607	
mm_17126.1	chr2	24818896	24819096	-	1	NA	NA	NA	-55844	NM_007579	12287	Mm.4424	NM_007579	ENSMUSG00000004113	Cacna1b	AW050276|AW060892|AW822256|BIII|Cav2.2|Cchn1a|alpha(1B)	calcium channel, voltage-dependent, N type, alpha 1B subunit	protein-coding	0.025000	0.432836	
mm_157577.1	chrX	52614150	52614350	-	1	NA	NA	NA	-276	NM_016697	14734	Mm.22515	NM_016697	ENSMUSG00000055653	Gpc3	OCI-5	glypican 3	protein-coding	0.055000	0.651741	
mm_46581.1	chr5	107437672	107437872	-	1	NA	NA	NA	-225	NM_001255991	100503185	Mm.366650	NM_001255991	ENSMUSG00000111375	Btbd8	EG627196|Gm16115|OTTMUSG00000030610	BTB (POZ) domain containing 8	protein-coding	0.065000	0.562189	
mm_53121.1	chr6	125113426	125113626	+	1	NA	NA	NA	16502	NR_106012	102466272		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	0.020000	0.482587	
mm_17360.1	chr2	26640143	26640343	-	1	NA	NA	NA	1	NR_024068	72091	Mm.27103	NR_024068		Snhg7	2610002F03Rik|AI427062	small nucleolar RNA host gene 7	ncRNA	0.095000	0.606965	64(CCCTATATACCC,+,0.00)
mm_70814.1	chr8	23095390	23095590	+	1	NA	NA	NA	37231	NR_102385	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.030000	0.407960	
mm_113858.1	chr13	47246886	47247086	+	1	NA	NA	NA	52983	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.010000	0.388060	
mm_123884.1	chr14	72709752	72709952	-	1	NA	NA	NA	151	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.115000	0.736318	
mm_140695.1	chr17	13761347	13761547	-	1	NA	NA	NA	-53	NM_022311	21646	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0.165000	0.736318	
mm_54504.1	chr6	35510594	35510794	-	1	NA	NA	NA	29194	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.353234	
mm_106808.1	chr12	5896491	5896691	+	1	NA	NA	NA	520089	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	0.005000	0.318408	
mm_131311.1	chr16	11584411	11584611	+	1	NA	NA	NA	178863	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.020000	0.452736	
mm_152457.1	chr19	10869678	10869878	-	1	NA	NA	NA	1	NM_133804	98170	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.085000	0.701493	
mm_157849.1	chrX	74410125	74410325	-	1	NA	NA	NA	-14387	NM_001161421	16151	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	0.015000	0.527363	
mm_168481.1	chr11	49023366	49023566	+	1	NA	NA	NA	-27267	NM_010999	18356	Mm.24769	NM_010999	ENSMUSG00000040328	Olfr56	IF7|MOR276-1	olfactory receptor 56	protein-coding	0.050000	0.562189	
mm_57272.1	chr6	123289722	123289922	-	1	NA	NA	NA	49	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.015000	0.407960	
mm_131499.1	chr16	17336450	17336650	+	1	NA	NA	NA	5179	NM_001331047	15160	Mm.6609	NM_008223	ENSMUSG00000022766	Serpind1	AA985900|AI303446|HC-II|HCII|Hcf2	serine (or cysteine) peptidase inhibitor, clade D, member 1	protein-coding	0.030000	0.502488	
mm_169966.1	chr17	12198906	12199106	+	1	NA	NA	NA	79722	NM_026644	68262	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.010000	0.547264	
mm_148896.1	chr19	6909641	6909841	+	1	NA	NA	NA	43	NM_026306	67674	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.100000	0.661692	
mm_132661.1	chr16	41830435	41830635	+	1	NA	NA	NA	297193	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.000000	0.348259	
mm_13445.1	chr2	105162430	105162630	+	1	NA	NA	NA	36001	NM_144783	22431	Mm.389339	NM_144783	ENSMUSG00000016458	Wt1	D630046I19Rik|Wt-1	Wilms tumor 1 homolog	protein-coding	0.000000	0.393035	
mm_121792.1	chr14	20082641	20082841	-	1	NA	NA	NA	431	NM_026209	67509	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0.060000	0.577114	
mm_66615.1	chr7	45466778	45466978	-	1	NA	NA	NA	20	NM_007527	12028	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.135000	0.691542	
mm_29390.1	chr3	108889911	108890111	-	1	NA	NA	NA	-3	NM_001165965	320181	Mm.244233	NM_177091	ENSMUSG00000045326	Fndc7	E230011A21Rik	fibronectin type III domain containing 7	protein-coding	0.000000	0.427861	
mm_110498.1	chr12	54203730	54203930	-	1	NA	NA	NA	44	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	0.090000	0.696517	
mm_37601.1	chr4	126752015	126752215	-	1	NA	NA	NA	1314	NM_011986	26562	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	0.025000	0.611940	
mm_47883.1	chr5	134703245	134703445	-	1	NA	NA	NA	-14755	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.010000	0.572139	
mm_78300.1	chr9	22475624	22475824	+	1	NA	NA	NA	9	NM_178415	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.065000	0.597015	
mm_140524.1	chr17	6317400	6317600	-	1	NA	NA	NA	-26	NM_001166629	100310872	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	0.080000	0.696517	
mm_163041.1	chr11	54141771	54141971	+	1	NA	NA	NA	40947	NM_011031	18452	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.010000	0.487562	
mm_109035.1	chr12	104101050	104101250	+	1	NA	NA	NA	37	NM_172953	268591	Mm.73172	NM_172953	ENSMUSG00000041550	Serpina5	4933415L04|PAI-3|Pci	serine (or cysteine) peptidase inhibitor, clade A, member 5	protein-coding	0.020000	0.502488	-76(CCTTTTATCGGG,+,0.00)
mm_100150.1	chr11	116080514	116080714	+	1	NA	NA	NA	-2653	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.020000	0.592040	
mm_91460.1	chr10	34096366	34096566	-	1	NA	NA	NA	53	NM_178908	103511	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404	family with sequence similarity 26, member E	protein-coding	0.015000	0.467662	
mm_129436.1	chr15	78495146	78495346	-	1	NA	NA	NA	-180	NM_008368	16185	Mm.35287	NM_008368	ENSMUSG00000068227	Il2rb	CD122|IL-15Rbeta|IL15Rbeta|Il-2/15Rbeta|Il-2Rbeta|p70	interleukin 2 receptor, beta chain	protein-coding	0.020000	0.557214	
mm_122799.1	chr14	54549938	54550138	-	1	NA	NA	NA	4323	NM_145462	219072	Mm.202152	NM_145462	ENSMUSG00000022177	Haus4	9430093H08Rik|AU016300|D14Ertd500e	HAUS augmin-like complex, subunit 4	protein-coding	0.040000	0.487562	
mm_154249.1	chr19	60766520	60766720	-	1	NA	NA	NA	7765	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.045000	0.582090	
mm_160635.1	chr9	107710207	107710407	-	1	NA	NA	NA	168	NM_011349	20350	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.070000	0.661692	
mm_66151.1	chr7	31142530	31142730	-	1	NA	NA	NA	8420	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.050000	0.597015	
mm_4956.1	chr1	191266725	191266925	+	1	NA	NA	NA	51293	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.020000	0.562189	
mm_150801.1	chr19	44333226	44333426	+	1	NA	NA	NA	0	NM_183216	329065	Mm.313583	NM_183216	ENSMUSG00000050195	Scd4	ACOD4	stearoyl-coenzyme A desaturase 4	protein-coding	0.025000	0.512438	-33(CCCTTTAAATCC,+,0.00)
mm_14074.1	chr2	122771615	122771815	+	1	NA	NA	NA	2	NR_027888	59010	Mm.28986	NM_021507	ENSMUSG00000005803	Sqrdl	0610039J17Rik|4930557M22Rik|SQOR	sulfide quinone reductase-like (yeast)	protein-coding	0.000000	0.457711	
mm_46387.1	chr5	104018333	104018533	-	1	NA	NA	NA	3363	NM_053262	114664	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0.015000	0.497512	
mm_108010.1	chr12	73584744	73584944	+	1	NA	NA	NA	48	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.120000	0.751244	
mm_37558.1	chr4	126163378	126163578	-	1	NA	NA	NA	-137	NM_001162533	66938	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	0.000000	0.537313	
mm_83731.1	chr9	51056886	51057086	-	1	NA	NA	NA	20108	NM_001033534	244864	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0.000000	0.512438	
mm_165140.1	chr2	14512493	14512693	+	1	NA	NA	NA	-91713	NM_023116	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.010000	0.502488	
mm_163474.1	chr12	103992292	103992492	+	1	NA	NA	NA	-2435	NM_001166350	380780	Mm.201338	NM_199314	ENSMUSG00000063232	Serpina11	Gm895	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11	protein-coding	0.020000	0.497512	
mm_4590.1	chr1	178335815	178336015	+	1	NA	NA	NA	1869	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.025000	0.442786	
mm_123050.1	chr14	55604330	55604530	-	1	NA	NA	NA	-149	NM_001159418	16391	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0.005000	0.537313	
mm_85899.1	chr9	111055869	111056069	-	1	NA	NA	NA	1275	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.035000	0.527363	
mm_5447.1	chr1	36240987	36241187	-	1	NA	NA	NA	3215	NM_198899	320011	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	0.005000	0.298507	-8(ACCTATTAAAAG,-,0.00),33(TACTTTTAAAGC,-,0.00),34(ACTTTTAAAGCA,+,0.00)
mm_167411.1	chr8	105932523	105932723	+	1	NA	NA	NA	1239	NM_023182	109660	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.025000	0.577114	
mm_13183.1	chr2	93181155	93181355	+	1	NA	NA	NA	-6329	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.000000	0.477612	16(GCCTAGAAAAGA,-,0.00)
mm_74590.1	chr8	11478543	11478743	-	1	NA	NA	NA	-144	NM_011227	19332	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0.090000	0.706468	
mm_116076.1	chr13	27716635	27716835	-	1	NA	NA	NA	2	NM_011120	18814	Mm.3258	NM_011120	ENSMUSG00000021348	Prl7d1	Ghd19|PLF-RP|PRP|Plfr	prolactin family 7, subfamily d, member 1	protein-coding	0.025000	0.472637	-34(GACTATATAAGA,-,0.00)
mm_1216.1	chr1	62727032	62727232	+	1	NA	NA	NA	23815	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.010000	0.447761	
mm_49475.1	chr6	29526607	29526807	+	1	NA	NA	NA	82	NM_012057	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.130000	0.800995	
mm_14299.1	chr2	128967695	128967895	+	1	NA	NA	NA	393	NM_178404	78751	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	0.100000	0.706468	
mm_121242.1	chr14	103056230	103056430	+	1	NA	NA	NA	9318	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.000000	0.318408	34(CACCATATAAAC,-,0.00),36(CCATATAAACAG,+,0.00)
mm_46879.1	chr5	113843977	113844177	-	1	NA	NA	NA	-13576	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.035000	0.517413	
mm_54406.1	chr6	31563783	31563983	-	1	NA	NA	NA	54	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	0.140000	0.781095	
mm_4625.1	chr1	179546321	179546521	+	1	NA	NA	NA	-108	NM_146105	226744	Mm.87662	NM_146105	ENSMUSG00000038949	Cnst	9630058J23Rik	consortin, connexin sorting protein	protein-coding	0.105000	0.701493	
mm_122971.1	chr14	54974626	54974826	-	1	NA	NA	NA	1050	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.025000	0.592040	
mm_34348.1	chr4	144529129	144529329	+	1	NA	NA	NA	9407	NM_198662	381572	Mm.184290	NM_198662	ENSMUSG00000028593	9430007A20Rik	Aadacl4|Gm1034	RIKEN cDNA 9430007A20 gene	protein-coding	0.000000	0.388060	
mm_48671.1	chr5	146008986	146009186	-	1	NA	NA	NA	531	NM_019792	56388	Mm.301900	NM_019792	ENSMUSG00000029630	Cyp3a25	AI327008	cytochrome P450, family 3, subfamily a, polypeptide 25	protein-coding	0.000000	0.422886	
mm_97404.1	chr11	77853530	77853730	+	1	NA	NA	NA	40242	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding	0.020000	0.597015	
mm_41265.1	chr5	89028032	89028232	+	1	NA	NA	NA	140872	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.015000	0.467662	
mm_124535.1	chr14	122451040	122451240	-	1	NA	NA	NA	6	NR_033326	328479	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.055000	0.661692	18(CGCTCTTAAAGA,-,0.00),19(GCTCTTAAAGAG,+,0.00),21(TCTTAAAGAGAC,+,0.00)
mm_83463.1	chr9	45264083	45264283	-	1	NA	NA	NA	2524	NR_106054	102466803		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.000000	0.447761	
mm_166016.1	chr4	121084046	121084246	-	1	NA	NA	NA	14097	NM_172700	230709	Mm.34399	NM_172700	ENSMUSG00000043207	Zmpste24	A530043O15Rik|D030046F19|FACE1|Face-1|MADB|STE24|Ste24p	zinc metallopeptidase, STE24	protein-coding	0.010000	0.487562	
mm_40828.1	chr5	72904952	72905152	+	1	NA	NA	NA	-9310	NM_001113423	75991	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0.020000	0.442786	
mm_57322.1	chr6	124733033	124733233	-	1	NA	NA	NA	21	NM_013545	15170	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.030000	0.651741	
mm_129269.1	chr15	76925322	76925522	-	1	NA	NA	NA	26	NM_172817	239546	Mm.183650	NM_172817	ENSMUSG00000054967	Zfp647	6030449J21|Es492|Znf250	zinc finger protein 647	protein-coding	0.085000	0.696517	
mm_161398.1	chr14	118676794	118676994	-	1	NA	NA	NA	37	NM_001163675	239273	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.030000	0.502488	
mm_126279.1	chr15	79209187	79209387	+	1	NA	NA	NA	-19886	NM_008837	18693	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	0.055000	0.651741	
mm_37012.1	chr4	112774748	112774948	-	1	NA	NA	NA	13	NM_177668	230613	Mm.122553	NM_177668	ENSMUSG00000048766	Skint10	A030001H23Rik|Gm570	selection and upkeep of intraepithelial T cells 10	protein-coding	0.005000	0.412935	
mm_45516.1	chr5	72504440	72504640	-	1	NA	NA	NA	0	NM_001122756	53419	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.035000	0.537313	
mm_168371.1	chr11	19409363	19409563	+	1	NA	NA	NA	344188	NR_046037	74059	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA	0.075000	0.552239	
mm_83225.1	chr9	42264154	42264354	-	1	NA	NA	NA	46	NM_172769	235293	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	0.100000	0.696517	
mm_122995.1	chr14	54991523	54991723	-	1	NA	NA	NA	2926	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.005000	0.482587	
mm_110760.1	chr12	70111902	70112102	-	1	NA	NA	NA	33	NM_001286080	18080	Mm.244047	NM_008697	ENSMUSG00000021068	Nin	3110068G20Rik|AI385615|AU024711|mKIAA1565	ninein	protein-coding	0.140000	0.786070	
mm_137777.1	chr17	29492903	29493103	+	1	NA	NA	NA	1958	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.010000	0.492537	
mm_79433.1	chr9	56041771	56041971	+	1	NA	NA	NA	26	NM_011992	26611	Mm.1782	NM_011992	ENSMUSG00000032320	Rcn2	AA408742|Tcbp49	reticulocalbin 2	protein-coding	0.085000	0.706468	-34(GGCCATATAAGG,-,0.00),-32(CCATATAAGGCA,+,0.00)
mm_61988.1	chr7	91090780	91090980	+	1	NA	NA	NA	94	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.020000	0.487562	-85(CTATATATAGCC,+,0.00)
mm_99320.1	chr11	101442354	101442554	+	1	NA	NA	NA	209	NM_011289	19942	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	0.065000	0.636816	
mm_172445.1	chr7	3002235	3002435	+	1	NA	NA	NA	-125811	NR_001583	73949	Mm.55687	NR_001583	ENSMUSG00000107956	Speer9-ps1	4930415A14Rik|SPEER-9|Speer9-ps	spermatogenesis associated glutamate (E)-rich protein 9, pseudogene 1	pseudo	0.025000	0.477612	
mm_71022.1	chr8	33516637	33516837	+	1	NA	NA	NA	32426	NR_033589	628431	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	0.055000	0.577114	-35(CGGTATATAAGT,-,0.00)
mm_9578.1	chr1	174027212	174027412	-	1	NA	NA	NA	4443	NM_172648	226695	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	0.000000	0.393035	
mm_140839.1	chr17	23670833	23671033	-	1	NA	NA	NA	-2675	NM_181821	353502	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	0.015000	0.587065	
mm_136061.1	chr16	84584962	84585162	-	1	NA	NA	NA	-94727	NR_040537	78023	Mm.243853	NR_040537		4930529L06Rik	-	RIKEN cDNA 4930529L06 gene	ncRNA	0.025000	0.432836	-34(GAGTTTAAAAAC,-,0.00)
mm_92252.1	chr10	70599177	70599377	-	1	NA	NA	NA	14	NM_178621	70911	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding	0.175000	0.776119	
mm_164675.1	chr17	46124129	46124329	+	1	NA	NA	NA	13225	NM_026768	68565	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	0.025000	0.582090	
mm_113354.1	chr13	31884094	31884294	+	1	NA	NA	NA	77548	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.010000	0.457711	
mm_31498.1	chr4	53246110	53246310	+	1	NA	NA	NA	14	NR_040665	78180	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.030000	0.482587	
mm_109045.1	chr12	104263023	104263223	+	1	NA	NA	NA	1	NM_001199940	628900	Mm.436602	NM_001199940	ENSMUSG00000079014	Serpina3i	2B2|EG628900|Gm6930	serine (or cysteine) peptidase inhibitor, clade A, member 3I	protein-coding	0.000000	0.552239	
mm_44315.1	chr5	9300031	9300231	-	1	NA	NA	NA	33938	NM_172706	231014	Mm.130063	NM_172706	ENSMUSG00000056004	9330182L06Rik	Eig121l	RIKEN cDNA 9330182L06 gene	protein-coding	0.020000	0.452736	
mm_89967.1	chr10	111473158	111473358	+	1	NA	NA	NA	66	NM_015781	53605	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.145000	0.711443	
mm_87940.1	chr10	62893073	62893273	+	1	NA	NA	NA	-13159	NM_001253857	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.005000	0.432836	
mm_64535.1	chr7	144175420	144175620	+	1	NA	NA	NA	0	NM_001113373	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.065000	0.567164	
mm_110897.1	chr12	75631114	75631314	-	1	NA	NA	NA	535	NR_038063	665931	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo	0.050000	0.562189	
mm_18487.1	chr2	62601415	62601615	-	1	NA	NA	NA	-27494	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.035000	0.447761	
mm_75874.1	chr8	70764670	70764870	-	1	NA	NA	NA	1893	NM_023065	65972	Mm.30241	NM_023065	ENSMUSG00000031838	Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	0.035000	0.572139	
mm_152714.1	chr19	17394403	17394603	-	1	NA	NA	NA	460	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.090000	0.611940	
mm_31373.1	chr4	47386150	47386350	+	1	NA	NA	NA	34	NM_001312869	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.005000	0.452736	
mm_97090.1	chr11	73160225	73160425	+	1	NA	NA	NA	-205	NM_033321	94045	Mm.156893	NM_033321	ENSMUSG00000005950	P2rx5	P2X5	purinergic receptor P2X, ligand-gated ion channel, 5	protein-coding	0.085000	0.681592	
mm_153196.1	chr19	34524907	34525107	-	1	NA	NA	NA	2467	NM_001111100	16889	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.015000	0.507463	87(GACTTTTAAAGA,-,0.00),88(ACTTTTAAAGAA,+,0.00)
mm_107150.1	chr12	23903066	23903266	+	1	NA	NA	NA	194103	NM_001256489	66808	Mm.379124	NM_001256489	ENSMUSG00000073158	9030624G23Rik	-	RIKEN cDNA 9030624G23 gene	protein-coding	0.050000	0.562189	
mm_21017.1	chr2	152397655	152397855	-	1	NA	NA	NA	291	NM_011438	20667	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.185000	0.855721	
mm_87682.1	chr10	59229974	59230174	+	1	NA	NA	NA	8152	NM_172939	268301	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.005000	0.407960	-31(AGCCATATAAGC,-,0.00)
mm_88294.1	chr10	75278213	75278413	+	1	NA	NA	NA	-38564	NM_009630	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.000000	0.547264	
mm_49731.1	chr6	34709481	34709681	+	1	NA	NA	NA	137	NM_145575	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.045000	0.626866	
mm_50717.1	chr6	52211690	52211890	+	1	NA	NA	NA	1277	NM_010452	15400	Mm.71533	NM_010452	ENSMUSG00000079560	Hoxa3	Hox-1.5|Mo-10	homeobox A3	protein-coding	0.105000	0.671642	
mm_19765.1	chr2	105399276	105399476	-	1	NA	NA	NA	-57	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0.130000	0.771144	
mm_72199.1	chr8	72571103	72571303	+	1	NA	NA	NA	-155	NM_172396	66818	Mm.22565	NM_172396	ENSMUSG00000044600	Smim7	9130011J15Rik	small integral membrane protein 7	protein-coding	0.065000	0.587065	
mm_70221.1	chr7	145110618	145110818	-	1	NA	NA	NA	97401	NR_033626	100040049	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.010000	0.582090	
mm_1645.1	chr1	74601381	74601581	+	1	NA	NA	NA	26	NM_175031	269209	Mm.310974	NM_175031	ENSMUSG00000033276	Stk36	1700112N14Rik|B930045J24|FU|Fused|mKIAA1278	serine/threonine kinase 36	protein-coding	0.050000	0.537313	
mm_49751.1	chr6	34746331	34746531	+	1	NA	NA	NA	-34001	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.025000	0.587065	
mm_166848.1	chr7	19696609	19696809	+	1	NA	NA	NA	1689	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.100000	0.711443	
mm_124506.1	chr14	121879628	121879828	-	1	NA	NA	NA	-320	NR_130999	78312	Mm.188743	NR_130999	ENSMUSG00000102112	1810041H14Rik	-	RIKEN cDNA 1810041H14 gene	ncRNA	0.020000	0.432836	
mm_149785.1	chr19	23140732	23140932	+	1	NA	NA	NA	-394	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.065000	0.572139	
mm_64002.1	chr7	140137861	140138061	+	1	NA	NA	NA	397	NM_199301	212508	Mm.296088	NM_199301	ENSMUSG00000039018	Mtg1	Gm169|Gtpbp7	mitochondrial ribosome-associated GTPase 1	protein-coding	0.035000	0.527363	
mm_86936.1	chr10	24223508	24223708	+	1	NA	NA	NA	91	NM_021509	59012	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	0.120000	0.761194	
mm_69449.1	chr7	133015410	133015610	-	1	NA	NA	NA	-263	NM_001170744	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.015000	0.562189	
mm_155691.1	chrX	94234499	94234699	+	1	NA	NA	NA	-331	NM_001039059	236904	Mm.115533	NM_153165	ENSMUSG00000043929	Klhl15	6330500C13Rik	kelch-like 15	protein-coding	0.105000	0.701493	
mm_27311.1	chr3	50366508	50366708	-	1	NA	NA	NA	77005	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.323383	
mm_76981.1	chr8	106893440	106893640	-	1	NA	NA	NA	53	NM_145412	214987	Mm.490308	NM_145412	ENSMUSG00000046691	Chtf8	5830457O10Rik|Ctf8|Derpc	CTF8, chromosome transmission fidelity factor 8	protein-coding	0.205000	0.800995	
mm_82749.1	chr9	26806323	26806523	-	1	NA	NA	NA	-6	NM_153803	244757	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0.065000	0.676617	
mm_35854.1	chr4	49407944	49408144	-	1	NA	NA	NA	107	NM_145368	209186	Mm.35071	NM_145368	ENSMUSG00000060317	Acnat2	C730036D15Rik	acyl-coenzyme A amino acid N-acyltransferase 2	protein-coding	0.015000	0.333333	
mm_125174.1	chr15	31565318	31565518	+	1	NA	NA	NA	-3494	NM_181588	69574	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0.015000	0.487562	
mm_51196.1	chr6	71271608	71271808	+	1	NA	NA	NA	37	NR_106192	102465900		NR_106192	ENSMUSG00000098623	Mir8112	Gm27739|mmu-mir-8112	microRNA 8112	ncRNA	0.105000	0.751244	
mm_72885.1	chr8	89041601	89041801	+	1	NA	NA	NA	2461	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.065000	0.601990	
mm_58943.1	chr7	18472287	18472487	+	1	NA	NA	NA	11762	NM_001029893	574429	Mm.296754	NM_001029893	ENSMUSG00000070799	Psg26	EG574429|cea14	pregnancy-specific glycoprotein 26	protein-coding	0.000000	0.457711	-33(GACCATAAAAGG,-,0.00),-31(CCATAAAAGGGG,+,0.00)
mm_99205.1	chr11	101022835	101023035	+	1	NA	NA	NA	-7405	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.010000	0.457711	
mm_33049.1	chr4	123016536	123016736	+	1	NA	NA	NA	39	NM_025873	66966	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	0.070000	0.631841	
mm_23609.1	chr3	65527723	65527923	+	1	NA	NA	NA	-624	NM_178892	99929	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	0.100000	0.626866	
mm_92555.1	chr10	79766867	79767067	-	1	NA	NA	NA	-15	NR_027505	70294	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0.140000	0.696517	
mm_169875.1	chr16	37654287	37654487	-	1	NA	NA	NA	-19	NM_026610	68194	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.085000	0.656716	
mm_68162.1	chr7	103812121	103812321	-	1	NA	NA	NA	1702	NM_016956	15130	Mm.288567	NM_016956		Hbb-b2	AI036344|Hbb2|Hbbt2|beta2	hemoglobin, beta adult minor chain	protein-coding	0.005000	0.353234	
mm_40172.1	chr5	35893352	35893552	+	1	NA	NA	NA	133	NM_027373	70292	Mm.125167	NM_027373	ENSMUSG00000029094	Afap1	2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018	actin filament associated protein 1	protein-coding	0.110000	0.721393	
mm_60076.1	chr7	34021381	34021581	+	1	NA	NA	NA	-86	NM_009596	11354	Mm.8025	NM_009596	ENSMUSG00000066583	Scgb1b27	Abp|Abpa|Abpa27|Sal-1|Tcp	secretoglobin, family 1B, member 27	protein-coding	0.000000	0.512438	39(AGTTATAAAAGG,-,0.00)
mm_52560.1	chr6	116207972	116208172	+	1	NA	NA	NA	39	NM_026585	28006	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	0.065000	0.616915	
mm_155834.1	chrX	100774699	100774899	+	1	NA	NA	NA	304	NM_001177779	53310	Mm.4615	NM_016747	ENSMUSG00000000881	Dlg3	Dlgh3|SAP102|mKIAA1232	discs, large homolog 3 (Drosophila)	protein-coding	0.030000	0.656716	
mm_88499.1	chr10	77837570	77837770	+	1	NA	NA	NA	1723	NM_001024709	544710	Mm.441890	NM_001024709		Krtap10-10	EG544710	keratin associated protein 10-10	protein-coding	0.015000	0.472637	
mm_45955.1	chr5	90462686	90462886	-	1	NA	NA	NA	1916	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.020000	0.447761	
mm_146024.1	chr18	69519717	69519917	+	1	NA	NA	NA	174096	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.020000	0.472637	
mm_152019.1	chr19	6015421	6015621	-	1	NA	NA	NA	-274	NM_007600	12333	Mm.6221	NM_007600	ENSMUSG00000024942	Capn1	Capa-1|Capa1|mu-calpin	calpain 1	protein-coding	0.070000	0.636816	
mm_21579.1	chr2	164237118	164237318	-	1	NA	NA	NA	1123	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.000000	0.393035	
mm_115468.1	chr13	119457036	119457236	+	1	NA	NA	NA	-5623	NM_001113550	67392	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	0.010000	0.278607	
mm_99817.1	chr11	108587034	108587234	+	1	NA	NA	NA	-95475	NM_145688	76380	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0.010000	0.363184	
mm_12647.1	chr2	74729731	74729931	+	1	NA	NA	NA	3761	NR_029566	387144		NR_029566	ENSMUSG00000065500	Mir10b	Mirn10b|mir-10b|mmu-mir-10b	microRNA 10b	ncRNA	0.000000	0.323383	
mm_23146.1	chr3	39364464	39364664	+	1	NA	NA	NA	477624	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.000000	0.298507	
mm_32972.1	chr4	120095034	120095234	+	1	NA	NA	NA	-66072	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.035000	0.582090	
mm_2739.1	chr1	128259354	128259554	+	1	NA	NA	NA	15273	NM_026390	67812	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0.015000	0.447761	
mm_121444.1	chr14	120430247	120430447	+	1	NA	NA	NA	-48114	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.010000	0.263682	
mm_84977.1	chr9	85327197	85327397	-	1	NA	NA	NA	-147	NM_001160379	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.120000	0.661692	-34(CGGTATAAAAAA,-,0.00)
mm_129985.1	chr15	86051193	86051393	-	1	NA	NA	NA	-6402	NM_172611	223752	Mm.24442	NM_172611	ENSMUSG00000035900	Gramd4	9930016O13	GRAM domain containing 4	protein-coding	0.025000	0.517413	
mm_121847.1	chr14	20631633	20631833	-	1	NA	NA	NA	-13379	NM_030180	78787	Mm.301173	NM_030180	ENSMUSG00000034235	Usp54	4930429G18Rik|AI115571|C030002J06Rik	ubiquitin specific peptidase 54	protein-coding	0.000000	0.258706	
mm_33496.1	chr4	130823550	130823750	+	1	NA	NA	NA	31113	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.025000	0.537313	
mm_46835.1	chr5	113310620	113310820	-	1	NA	NA	NA	66	NM_001162965	52850	Mm.200203	NM_172718	ENSMUSG00000042216	Sgsm1	2410098H20Rik|AA408781|D5Bwg1524e|E130107M15|NuIP|Rutbc2	small G protein signaling modulator 1	protein-coding	0.115000	0.736318	
mm_134651.1	chr16	21995364	21995564	-	1	NA	NA	NA	78	NM_001289582	239759	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	0.065000	0.597015	
mm_4252.1	chr1	171408088	171408288	+	1	NA	NA	NA	-3125	NM_001305678	22278	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	0.020000	0.462687	
mm_171247.1	chr3	78559547	78559747	-	1	NA	NA	NA	585240	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.035000	0.502488	
mm_134241.1	chr16	12945801	12946001	-	1	NA	NA	NA	134511	NR_040507	75493	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.010000	0.517413	
mm_128324.1	chr15	38061506	38061706	-	1	NA	NA	NA	17248	NM_001112721	70790	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.000000	0.273632	
mm_111289.1	chr12	85455113	85455313	-	1	NA	NA	NA	-18688	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.045000	0.606965	
mm_173176.1	chrX	50468984	50469184	-	1	NA	NA	NA	-42590	NM_146292	258289	Mm.451653	NM_146292	ENSMUSG00000048173	Olfr1324	MOR128-2	olfactory receptor 1324	protein-coding	0.055000	0.552239	-30(GAGTATAAAAGG,-,0.00)
mm_72632.1	chr8	84664150	84664350	+	1	NA	NA	NA	-1398	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.075000	0.582090	
mm_160533.1	chr9	39019577	39019777	-	1	NA	NA	NA	-138	NM_146747	258742	Mm.271535	NM_146747	ENSMUSG00000058820	Olfr146	M15|MOR171-10	olfactory receptor 146	protein-coding	0.000000	0.268657	
mm_88234.1	chr10	71347650	71347850	+	1	NA	NA	NA	-13	NM_001347191	69718	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.115000	0.736318	
mm_152126.1	chr19	6999336	6999536	-	1	NA	NA	NA	3305	NR_027351	107328	Mm.391161	NM_153597	ENSMUSG00000047656	Trpt1	AU079016|AW045591|Tpt1|Tpt1h	tRNA phosphotransferase 1	protein-coding	0.040000	0.582090	
mm_137927.1	chr17	32536464	32536664	+	1	NA	NA	NA	-65	NM_024442	70101	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0.010000	0.557214	
mm_26025.1	chr3	135438959	135439159	+	1	NA	NA	NA	300	NM_025356	66105	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.170000	0.820896	
mm_2534.1	chr1	106998495	106998695	+	1	NA	NA	NA	17611	NM_172852	241196	Mm.110886	NM_172852	ENSMUSG00000048775	Serpinb13	5430417G24|HUR7|HURPIN|PI13|headpin	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 13	protein-coding	0.005000	0.442786	
mm_149630.1	chr19	17222382	17222582	+	1	NA	NA	NA	117023	NM_001136484	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.020000	0.527363	
mm_48172.1	chr5	137153966	137154166	-	1	NA	NA	NA	-37859	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.030000	0.512438	
mm_158755.1	chrX	166457787	166457987	-	1	NA	NA	NA	17132	NM_001313722	66226	Mm.279752	NM_025432	ENSMUSG00000079317	Trappc2	1110066L09Rik|1810064C02Rik|AW496358|MIP-2A|Sedl|TRS20	trafficking protein particle complex 2	protein-coding	0.025000	0.472637	
mm_165578.1	chr3	27316992	27317192	+	1	NA	NA	NA	15	NM_009425	22035	Mm.1062	NM_009425	ENSMUSG00000039304	Tnfsf10	A330042I21Rik|AI448571|APO-2L|Ly81|TL2|Tnlg6a|Trail	tumor necrosis factor (ligand) superfamily, member 10	protein-coding	0.015000	0.527363	
mm_172547.1	chr8	100030394	100030594	+	1	NA	NA	NA	613820	NR_132435	234624	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	0.070000	0.547264	
mm_23950.1	chr3	84858724	84858924	+	1	NA	NA	NA	-5321	NM_001177774	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.000000	0.353234	
mm_13139.1	chr2	92183721	92183921	+	1	NA	NA	NA	-361	NM_138755	192285	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0.100000	0.731343	
mm_150886.1	chr19	45150700	45150900	+	1	NA	NA	NA	85	NM_021901	21908	Mm.391203	NM_021901	ENSMUSG00000025215	Tlx1	Hox-11|Hox11|Tlx-1	T cell leukemia, homeobox 1	protein-coding	0.095000	0.686567	
mm_144147.1	chr18	4994912	4995112	+	1	NA	NA	NA	-51577	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.000000	0.368159	-33(GTCTTTAAAGGT,-,0.00)
mm_117923.1	chr13	99433904	99434104	-	1	NA	NA	NA	-21178	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.010000	0.422886	
mm_107913.1	chr12	70997436	70997636	+	1	NA	NA	NA	18287	NR_045056	73204	Mm.363770	NR_045055	ENSMUSG00000085622	3110056K07Rik	4921536K06Rik	RIKEN cDNA 3110056K07 gene	ncRNA	0.010000	0.333333	39(CAATTTTAAAGG,-,0.00)
mm_18750.1	chr2	73386273	73386473	-	1	NA	NA	NA	107	NM_001276443	68526	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0.080000	0.656716	
mm_61763.1	chr7	82771840	82772040	+	1	NA	NA	NA	-16296	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.075000	0.691542	
mm_3899.1	chr1	161704768	161704968	+	1	NA	NA	NA	83627	NM_001205243	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.000000	0.398010	50(GGCTCTAAAAAG,-,0.00)
mm_84260.1	chr9	62536877	62537077	-	1	NA	NA	NA	67	NM_175484	235431	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.140000	0.781095	
mm_41620.1	chr5	96837402	96837602	+	1	NA	NA	NA	44117	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.005000	0.477612	-90(CCTTTACTAGAG,+,0.00)
mm_4673.1	chr1	180401952	180402152	+	1	NA	NA	NA	-71503	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.010000	0.462687	
mm_135439.1	chr16	45397037	45397237	-	1	NA	NA	NA	11916	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.005000	0.472637	-100(TTCTCTAAAAAC,-,0.00)
mm_86170.1	chr9	119093385	119093585	-	1	NA	NA	NA	17	NR_121571	18799	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	0.100000	0.706468	
mm_169559.1	chr15	10470235	10470435	-	1	NA	NA	NA	181	NM_030046	78244	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	0.125000	0.771144	
mm_43530.1	chr5	137289885	137290085	+	1	NA	NA	NA	1731	NM_001290010	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.000000	0.547264	
mm_99937.1	chr11	111026840	111027040	+	1	NA	NA	NA	3080	NM_001252208	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.010000	0.407960	-53(AGCTTTATAAAC,-,0.00),-51(CTTTATAAACTG,+,0.00)
mm_3218.1	chr1	135845512	135845712	+	1	NA	NA	NA	4751	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.010000	0.582090	
mm_92187.1	chr10	68097927	68098127	-	1	NA	NA	NA	118429	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.025000	0.542289	
mm_63781.1	chr7	131570972	131571172	+	1	NA	NA	NA	10578	NM_001317350	12237	Mm.927	NM_009774	ENSMUSG00000066979	Bub3	AU019800|AU021329|AU043350|AW146323|C78067	BUB3 mitotic checkpoint protein	protein-coding	0.020000	0.388060	
mm_126012.1	chr15	76626099	76626299	+	1	NA	NA	NA	-115	NM_001305668	66914	Mm.30028	NM_025842	ENSMUSG00000059323	Vps28	1110014J03Rik|CIIA|D730005C08Rik	vacuolar protein sorting 28	protein-coding	0.040000	0.487562	
mm_120362.1	chr14	64440068	64440268	+	1	NA	NA	NA	858	NM_001253715	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.020000	0.512438	1(CCTCTTAGAGGC,+,0.00)
mm_10008.1	chr1	191791272	191791472	-	1	NA	NA	NA	-30101	NM_010892	18005	Mm.33773	NM_010892	ENSMUSG00000026622	Nek2	AA617254|C77054	NIMA (never in mitosis gene a)-related expressed kinase 2	protein-coding	0.020000	0.472637	
mm_53042.1	chr6	124663101	124663301	+	1	NA	NA	NA	97	NM_145130	14792	Mm.273915	NM_145130	ENSMUSG00000004270	Lpcat3	C3f|Grcc3f|Lpcat|Lpeat|Lplat5|Lpsat|Mboat5|Moact5|Oact5|PTG	lysophosphatidylcholine acyltransferase 3	protein-coding	0.105000	0.701493	
mm_11828.1	chr2	44988633	44988833	+	1	NA	NA	NA	34444	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.075000	0.547264	
mm_75794.1	chr8	70108352	70108552	-	1	NA	NA	NA	-5866	NR_106033	102465646		NR_106033	ENSMUSG00000099042	Mir7066	Gm27290|mmu-mir-7066	microRNA 7066	ncRNA	0.025000	0.666667	
mm_169922.1	chr16	57391196	57391396	-	1	NA	NA	NA	38019	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.075000	0.507463	74(AACTTTAAATGG,-,0.00)
mm_45616.1	chr5	75835738	75835938	-	1	NA	NA	NA	142590	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.045000	0.606965	
mm_173064.1	chrX	134054377	134054577	-	1	NA	NA	NA	-4699	NM_001290398	108062	Mm.67938	NM_133196	ENSMUSG00000031256	Cstf2	C630034J23Rik|Cstf64|mir-3112	cleavage stimulation factor, 3' pre-RNA subunit 2	protein-coding	0.005000	0.412935	
mm_25052.1	chr3	98382379	98382579	+	1	NA	NA	NA	-2	NM_172863	242109	Mm.358911	NM_172863	ENSMUSG00000050064	Zfp697	9430053K19|AI467503|Znf697	zinc finger protein 697	protein-coding	0.055000	0.641791	
mm_51552.1	chr6	83325947	83326147	+	1	NA	NA	NA	8	NM_145571	232157	Mm.29500	NM_145571	ENSMUSG00000043131	Mob1a	4022402H07Rik|MOB1|MOB4B|Mobk1b|Mobkl1b	MOB kinase activator 1A	protein-coding	0.100000	0.666667	
mm_125215.1	chr15	34082713	34082913	+	1	NA	NA	NA	94	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.125000	0.751244	
mm_116696.1	chr13	49652669	49652869	-	1	NA	NA	NA	-38	NM_025495	66336	Mm.440323	NM_025495	ENSMUSG00000021391	Cenpp	1700022C02Rik|4921518G09Rik	centromere protein P	protein-coding	0.125000	0.681592	
mm_65083.1	chr7	19227890	19228090	-	1	NA	NA	NA	-399	NM_207525	403187	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.070000	0.582090	
mm_144446.1	chr18	22643478	22643678	+	1	NA	NA	NA	298489	NM_001167777	211961	Mm.392310	NM_001167777	ENSMUSG00000045215	Asxl3	C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945	additional sex combs like 3 (Drosophila)	protein-coding	0.005000	0.417910	
mm_172177.1	chr6	48525008	48525208	-	1	NA	NA	NA	12366	NR_130985	69432		NR_130985	ENSMUSG00000097716	1700026J14Rik	-	RIKEN cDNA 1700026J14 gene	ncRNA	0.060000	0.557214	
mm_78671.1	chr9	40774321	40774521	+	1	NA	NA	NA	-26852	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.030000	0.532338	
mm_111862.1	chr12	107971937	107972137	-	1	NA	NA	NA	31377	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.005000	0.507463	
mm_64746.1	chr7	4771244	4771444	-	1	NA	NA	NA	-74	NM_172895	243822	Mm.333542	NM_172895	ENSMUSG00000092518	Fam71e2	4930401F20Rik	family with sequence similarity 71, member E2	protein-coding	0.010000	0.582090	
mm_66845.1	chr7	49162060	49162260	-	1	NA	NA	NA	-84029	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.020000	0.512438	
mm_132725.1	chr16	43618913	43619113	+	1	NA	NA	NA	-21642	NR_030576	100124467		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.005000	0.427861	34(GCCTCTAAATAC,-,0.00)
mm_91944.1	chr10	60831480	60831680	-	1	NA	NA	NA	1	NM_029770	107449	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0.150000	0.791045	
mm_170465.1	chr18	9707469	9707669	+	1	NA	NA	NA	-79	NM_130449	140792	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.140000	0.786070	
mm_156234.1	chrX	135885864	135886064	+	1	NA	NA	NA	113	NM_198161	70237	Mm.440847	NM_198161	ENSMUSG00000072964	Bhlhb9	2700087I09Rik	basic helix-loop-helix domain containing, class B9	protein-coding	0.090000	0.691542	
mm_58639.1	chr7	6155201	6155401	+	1	NA	NA	NA	670	NM_001013012	67109	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.075000	0.631841	
mm_7395.1	chr1	113903978	113904178	-	1	NA	NA	NA	-1781059	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.025000	0.507463	
mm_133560.1	chr16	91391726	91391926	+	1	NA	NA	NA	-14409	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.030000	0.447761	
mm_144018.1	chr17	89200591	89200791	-	1	NA	NA	NA	-16	NM_013523	14309	Mm.57155	NM_013523	ENSMUSG00000032937	Fshr	-	follicle stimulating hormone receptor	protein-coding	0.025000	0.492537	
mm_74628.1	chr8	13171139	13171339	-	1	NA	NA	NA	12078	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.005000	0.527363	
mm_139039.1	chr17	46227675	46227875	+	1	NA	NA	NA	-3756	NR_030466	751553		NR_030466	ENSMUSG00000076141	Mir693	Mirn693|mir-693|mmu-mir-693	microRNA 693	ncRNA	0.020000	0.487562	
mm_49299.1	chr6	17743488	17743688	+	1	NA	NA	NA	-4	NM_001289629	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.020000	0.527363	
mm_70313.1	chr8	4239003	4239203	+	1	NA	NA	NA	363	NM_001164172	26400	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	0.080000	0.726368	
mm_86444.1	chr10	4242383	4242583	+	1	NA	NA	NA	-23846	NM_031185	83397	Mm.27481	NM_031185	ENSMUSG00000038587	Akap12	AI317366|SSeCKS|Srcs5|Tsga12	A kinase (PRKA) anchor protein (gravin) 12	protein-coding	0.035000	0.502488	
mm_132132.1	chr16	31878753	31878953	+	1	NA	NA	NA	43	NM_013900	30060	Mm.30988	NM_013900	ENSMUSG00000022780	Mfi2	CD228|MTf|Meltf	antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5	protein-coding	0.030000	0.601990	-8(GCTTAAATAGTG,+,0.00)
mm_62914.1	chr7	117670530	117670730	+	1	NA	NA	NA	289651	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.010000	0.427861	
mm_20006.1	chr2	119156861	119157061	-	1	NA	NA	NA	73	NM_001033136	67809	Mm.475909	NM_001033136	ENSMUSG00000070730	Rmdn3	1200015F23Rik|AI131757|Fam82a2|Ptpip51|RMD-3|Rmd3	regulator of microtubule dynamics 3	protein-coding	0.090000	0.656716	
mm_166113.1	chr4	149622674	149622874	+	1	NA	NA	NA	32793	NR_105990	102465983		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.000000	0.462687	
mm_162317.1	chr1	38393874	38394074	-	1	NA	NA	NA	233270	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.005000	0.442786	
mm_15605.1	chr2	160731179	160731379	+	1	NA	NA	NA	-31	NM_021280	18803	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.115000	0.761194	
mm_112640.1	chr13	16014365	16014565	+	1	NA	NA	NA	2614	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.442786	73(GCTTTTAAATTC,+,0.00)
mm_24451.1	chr3	90612840	90613040	+	1	NA	NA	NA	46	NM_011313	20200	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0.035000	0.527363	
mm_135071.1	chr16	34255565	34255765	-	1	NA	NA	NA	258362	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.005000	0.452736	
mm_151130.1	chr19	48206048	48206248	+	1	NA	NA	NA	123	NM_025696	66673	Mm.70980	NM_025696	ENSMUSG00000063434	Sorcs3	6330404A12Rik|AW045579	sortilin-related VPS10 domain containing receptor 3	protein-coding	0.105000	0.756219	
mm_31348.1	chr4	46601931	46602131	+	1	NA	NA	NA	-102	NM_001164804	107684	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.135000	0.741294	
mm_117456.1	chr13	74808728	74808928	-	1	NA	NA	NA	-68	NM_001301153	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.015000	0.527363	
mm_169772.1	chr1	60047719	60047919	+	1	NA	NA	NA	-4697	NM_001316695	70375	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15	islet cell autoantigen 1-like	protein-coding	0.030000	0.557214	-34(CCTTTTATAAGC,+,0.00),-34(CCTTTTATAAGC,-,0.00)
mm_151935.1	chr19	5800507	5800707	-	1	NA	NA	NA	2065	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.437811	
mm_92751.1	chr10	81025283	81025483	-	1	NA	NA	NA	-6	NM_145217	208666	Mm.44995	NM_145217	ENSMUSG00000043670	Diras1	Di-Ras1|Gbts1|RIG	DIRAS family, GTP-binding RAS-like 1	protein-coding	0.115000	0.805970	
mm_171268.1	chr3	88577757	88577957	-	1	NA	NA	NA	-1814	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.005000	0.517413	
mm_150830.1	chr19	44746607	44746807	+	1	NA	NA	NA	-10687	NM_011037	18504	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0.130000	0.746269	
mm_154988.1	chrX	38189758	38189958	+	1	NA	NA	NA	65	NM_001079513	56805	Mm.391248	NM_020256	ENSMUSG00000048047	Zbtb33	AW260253|E130014G12Rik|Kaiso|Znf-kaiso	zinc finger and BTB domain containing 33	protein-coding	0.125000	0.711443	-52(ACATTTAAAGCG,+,0.00)
mm_92937.1	chr10	84533899	84534099	-	1	NA	NA	NA	-111	NM_175451	216197	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.180000	0.835821	
mm_149782.1	chr19	23136641	23136841	+	1	NA	NA	NA	-4485	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.030000	0.517413	
mm_58535.1	chr7	4460644	4460844	+	1	NA	NA	NA	-3991	NM_026146	67425	Mm.360392	NM_026146	ENSMUSG00000006154	Eps8l1	2310051G19Rik|4632407K17Rik|AW060268|DRC3|EPS8R1	EPS8-like 1	protein-coding	0.035000	0.537313	
mm_94261.1	chr11	3488198	3488398	+	1	NA	NA	NA	71	NM_172791	237625	Mm.100476	NM_172791	ENSMUSG00000034579	Pla2g3	-	phospholipase A2, group III	protein-coding	0.015000	0.621891	
mm_152671.1	chr19	14597960	14598160	-	1	NA	NA	NA	123	NM_001302950	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.055000	0.507463	
mm_34581.1	chr4	150139417	150139617	+	1	NA	NA	NA	-9455	NM_001085529	435818	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	OTTMUSG00000010396	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0.035000	0.631841	
mm_111851.1	chr12	107939007	107939207	-	1	NA	NA	NA	64307	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.030000	0.442786	
mm_103378.1	chr11	75414872	75415072	-	1	NA	NA	NA	7651	NM_011340	20317	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.035000	0.587065	
mm_123363.1	chr14	63144646	63144846	-	1	NA	NA	NA	22284	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.005000	0.348259	
mm_119110.1	chr14	31001572	31001772	+	1	NA	NA	NA	-6	NM_026911	69019	Mm.28852	NM_026911	ENSMUSG00000021917	Spcs1	1810004F21Rik	signal peptidase complex subunit 1 homolog (S. cerevisiae)	protein-coding	0.100000	0.701493	
mm_3756.1	chr1	156040994	156041194	+	1	NA	NA	NA	233	NM_022329	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.015000	0.427861	
mm_44968.1	chr5	36795738	36795938	-	1	NA	NA	NA	916	NM_026242	67568	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0.025000	0.422886	
mm_98568.1	chr11	95384852	95385052	+	1	NA	NA	NA	30	NM_016752	110172	Mm.4593	NM_016752	ENSMUSG00000020873	Slc35b1	Ugalt2	solute carrier family 35, member B1	protein-coding	0.125000	0.681592	
mm_65112.1	chr7	19310113	19310313	-	1	NA	NA	NA	-168	NM_001347586	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.060000	0.661692	
mm_79531.1	chr9	57764356	57764556	+	1	NA	NA	NA	1404	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.050000	0.592040	
mm_131578.1	chr16	18407560	18407760	+	1	NA	NA	NA	5834	NM_001111063	12846	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.015000	0.532338	42(CCTTTAATGTGC,+,0.00)
mm_143560.1	chr17	74188022	74188222	-	1	NA	NA	NA	106741	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.000000	0.383085	
mm_84170.1	chr9	59940964	59941164	-	1	NA	NA	NA	9015	NM_013708	23958	Mm.103641	NM_013708	ENSMUSG00000032292	Nr2e3	A930035N01Rik|PNR|RNR|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding	0.025000	0.572139	-74(ACCTTTAAGAGG,-,0.00),-73(CCTTTAAGAGGC,+,0.00)
mm_77601.1	chr8	123892835	123893035	-	1	NA	NA	NA	1840	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.050000	0.592040	
mm_116623.1	chr13	48880347	48880547	-	1	NA	NA	NA	-9562	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.010000	0.308458	
mm_20009.1	chr2	119208685	119208885	-	1	NA	NA	NA	10	NM_139139	69408	Mm.222241	NM_139139	ENSMUSG00000034278	Dnajc17	1700025B16Rik|C87112|D9Bwg1371e	DnaJ heat shock protein family (Hsp40) member C17	protein-coding	0.070000	0.572139	
mm_142874.1	chr17	51823287	51823487	-	1	NA	NA	NA	3201	NM_001163631	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.005000	0.427861	
mm_11767.1	chr2	38536766	38536966	+	1	NA	NA	NA	24990	NM_001159631	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.010000	0.517413	
mm_58139.1	chr6	141855447	141855647	-	1	NA	NA	NA	624	NM_030687	28250	Mm.255586	NM_030687	ENSMUSG00000030237	Slco1a4	AI785519|Oatp1a4|Oatp2|Slc21a5	solute carrier organic anion transporter family, member 1a4	protein-coding	0.010000	0.417910	
mm_147372.1	chr18	43438364	43438564	-	1	NA	NA	NA	-178	NM_001291455	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.065000	0.616915	
mm_131795.1	chr16	22898953	22899153	+	1	NA	NA	NA	-4667	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.025000	0.597015	
mm_99203.1	chr11	101022781	101022981	+	1	NA	NA	NA	-7459	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.020000	0.507463	
mm_170879.1	chr2	20899969	20900169	+	1	NA	NA	NA	67652	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.080000	0.552239	28(AACTTTAAATGG,-,0.00)
mm_107618.1	chr12	51348217	51348417	+	1	NA	NA	NA	87	NM_001015099	217558	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding	0.130000	0.686567	
mm_50859.1	chr6	55306797	55306997	+	1	NA	NA	NA	-29402	NM_007472	11826	Mm.18625	NM_007472	ENSMUSG00000004655	Aqp1	CHIP28	aquaporin 1	protein-coding	0.005000	0.537313	-38(TACTATAAAAGG,-,0.00)
mm_34059.1	chr4	138434598	138434798	+	1	NA	NA	NA	26	NM_026689	68350	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	0.130000	0.661692	
mm_74651.1	chr8	13396676	13396876	-	1	NA	NA	NA	2	NM_009724	11945	Mm.154039	NM_009724	ENSMUSG00000031449	Atp4b	AV080843	ATPase, H+/K+ exchanging, beta polypeptide	protein-coding	0.035000	0.562189	
mm_130043.1	chr15	89106073	89106273	-	1	NA	NA	NA	16977	NM_001163319	328580	Mm.380934	NM_001163319	ENSMUSG00000051786	Tubgcp6	AI843275|D430023H11|GCP-6|mKIAA1669	tubulin, gamma complex associated protein 6	protein-coding	0.025000	0.562189	
mm_137822.1	chr17	30576244	30576444	+	1	NA	NA	NA	-57	NM_027060	224671	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0.150000	0.741294	
mm_20402.1	chr2	129297075	129297275	-	1	NA	NA	NA	37	NM_181589	70466	Mm.45785	NM_181589	ENSMUSG00000048327	Ckap2l	2010016H04Rik|2610318C08Rik|AV070319|radmis|rdm	cytoskeleton associated protein 2-like	protein-coding	0.095000	0.611940	
mm_79510.1	chr9	57504447	57504647	+	1	NA	NA	NA	445	NM_133982	102614	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	0.115000	0.686567	
mm_134236.1	chr16	11909268	11909468	-	1	NA	NA	NA	55	NM_146067	223978	Mm.86360	NM_146067	ENSMUSG00000065979	Cpped1	C530044N13Rik	calcineurin-like phosphoesterase domain containing 1	protein-coding	0.080000	0.696517	
mm_2605.1	chr1	120121072	120121272	+	1	NA	NA	NA	-15	NM_028439	73103	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	0.110000	0.631841	
mm_48763.1	chr5	148392713	148392913	-	1	NA	NA	NA	2	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.025000	0.467662	-35(GGGCTTATAAAG,-,0.00),-33(GCTTATAAAGGT,+,0.00)
mm_69118.1	chr7	127026039	127026239	-	1	NA	NA	NA	340	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.145000	0.786070	
mm_133968.1	chr16	4229016	4229216	-	1	NA	NA	NA	0	NR_040571	76397	Mm.243719	NM_183117		4930455F16Rik	1700013J11Rik	RIKEN cDNA 4930455F16 gene	ncRNA	0.000000	0.462687	-79(GCTTTTAGAATC,+,0.00),60(CCCTCTTTAGGG,-,0.00)
mm_70311.1	chr8	4238650	4238850	+	1	NA	NA	NA	10	NM_001164172	26400	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	0.115000	0.686567	
mm_134552.1	chr16	19982934	19983134	-	1	NA	NA	NA	15	NM_183390	239743	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.025000	0.527363	
mm_42431.1	chr5	115345741	115345941	+	1	NA	NA	NA	3114	NM_007748	12861	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	0.035000	0.552239	
mm_106620.1	chr11	120821034	120821234	-	1	NA	NA	NA	3413	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.020000	0.577114	
mm_31123.1	chr4	42969848	42970048	+	1	NA	NA	NA	2	NM_026088	67317	Mm.478018	NM_026088	ENSMUSG00000028451	1700022I11Rik	-	RIKEN cDNA 1700022I11 gene	protein-coding	0.015000	0.482587	
mm_71407.1	chr8	46471078	46471278	+	1	NA	NA	NA	141	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.115000	0.706468	-32(CCTTAAATAGCA,+,0.00)
mm_5512.1	chr1	37519092	37519292	-	1	NA	NA	NA	17212	NM_001290801	269181	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.005000	0.402985	
mm_103518.1	chr11	76787510	76787710	-	1	NA	NA	NA	-24055	NM_016810	53334	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	0.010000	0.383085	
mm_60469.1	chr7	44477959	44478159	+	1	NA	NA	NA	-6458	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.487562	
mm_80379.1	chr9	75410110	75410310	+	1	NA	NA	NA	26	NR_040719	71274	Mm.399152	NR_040719	ENSMUSG00000097021	4933433G15Rik	4921522K19Rik	RIKEN cDNA 4933433G15 gene	ncRNA	0.120000	0.691542	
mm_6759.1	chr1	84068992	84069192	-	1	NA	NA	NA	149869	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.447761	
mm_2095.1	chr1	87702248	87702448	+	1	NA	NA	NA	-53663	NM_029846	77040	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.005000	0.457711	40(CCCTTTTAAAAG,-,0.00),41(CCTTTTAAAAGA,+,0.00),41(CCTTTTAAAAGA,-,0.00),42(CTTTTAAAAGAC,+,0.00)
mm_161222.1	chr13	68582315	68582515	+	1	NA	NA	NA	205	NR_138478	69577	Mm.23670	NM_027123	ENSMUSG00000021532	Fastkd3	2310010B21Rik|AW048587	FAST kinase domains 3	protein-coding	0.100000	0.666667	
mm_165786.1	chr3	131474517	131474717	-	1	NA	NA	NA	-90151	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.020000	0.522388	
mm_47338.1	chr5	122502069	122502269	-	1	NA	NA	NA	56	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.160000	0.766169	
mm_80674.1	chr9	90245331	90245531	+	1	NA	NA	NA	25338	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.020000	0.507463	
mm_42316.1	chr5	114883269	114883469	+	1	NA	NA	NA	-13565	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.040000	0.572139	
mm_104884.1	chr11	99543119	99543319	-	1	NA	NA	NA	-61	NM_001317213	406221	Mm.422372	NM_001039666	ENSMUSG00000059169	Krt40	CK-40|K40	keratin 40	protein-coding	0.020000	0.482587	
mm_27529.1	chr3	57387680	57387880	-	1	NA	NA	NA	-37630	NM_145539	229302	Mm.26618	NM_145539	ENSMUSG00000027801	Tm4sf4	Iltmp	transmembrane 4 superfamily member 4	protein-coding	0.005000	0.378109	
mm_51044.1	chr6	65621767	65621967	+	1	NA	NA	NA	31469	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.010000	0.447761	
mm_13219.1	chr2	96340984	96341184	+	1	NA	NA	NA	22915	NM_001289743	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.005000	0.422886	
mm_104104.1	chr11	86705133	86705333	-	1	NA	NA	NA	21152	NM_001098810	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.020000	0.417910	
mm_171048.1	chr3	102436280	102436480	-	1	NA	NA	NA	-33539	NM_001112698	18049	Mm.1259	NM_013609	ENSMUSG00000027859	Ngf	Ngfb	nerve growth factor	protein-coding	0.030000	0.447761	
mm_94761.1	chr11	21149619	21149819	+	1	NA	NA	NA	58395	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.015000	0.507463	53(CTTTTTAAATGC,+,0.00)
mm_95288.1	chr11	45980130	45980330	+	1	NA	NA	NA	-80	NM_173384	214105	Mm.66708	NM_173384	ENSMUSG00000040489	Sox30	-	SRY (sex determining region Y)-box 30	protein-coding	0.085000	0.686567	
mm_138701.1	chr17	35998270	35998470	+	1	NA	NA	NA	3866	NR_015618	77810	Mm.483143	NR_015618		A930015D03Rik	-	RIKEN cDNA A930015D03 gene	ncRNA	0.005000	0.512438	
mm_28671.1	chr3	95283417	95283617	-	1	NA	NA	NA	582	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.090000	0.656716	
mm_133572.1	chr16	91406187	91406387	+	1	NA	NA	NA	52	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.110000	0.771144	
mm_146053.1	chr18	69636800	69637000	+	1	NA	NA	NA	-288659	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.045000	0.567164	
mm_49310.1	chr6	18170490	18170690	+	1	NA	NA	NA	-97	NM_021050	12638	Mm.15621	NM_021050	ENSMUSG00000041301	Cftr	AW495489|Abcc7	cystic fibrosis transmembrane conductance regulator	protein-coding	0.125000	0.756219	
mm_85102.1	chr9	94538143	94538343	-	1	NA	NA	NA	-162	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0.165000	0.776119	
mm_23393.1	chr3	57441270	57441470	+	1	NA	NA	NA	15960	NM_145539	229302	Mm.26618	NM_145539	ENSMUSG00000027801	Tm4sf4	Iltmp	transmembrane 4 superfamily member 4	protein-coding	0.005000	0.258706	60(TTGTATATAAAG,-,0.00)
mm_44093.1	chr5	149246249	149246449	+	1	NA	NA	NA	-18655	NM_001308462	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.030000	0.646766	
mm_48678.1	chr5	146220847	146221047	-	1	NA	NA	NA	24	NM_001256085	74132	Mm.26696	NM_028774	ENSMUSG00000029634	Rnf6	1200013I08Rik|5730419H05Rik|AA537053	ring finger protein (C3H2C3 type) 6	protein-coding	0.040000	0.512438	
mm_169854.1	chr1	63303152	63303352	+	1	NA	NA	NA	29983	NM_001267872	73884	Mm.86986	NM_028673	ENSMUSG00000027520	Zdbf2	4930431J08Rik|9330107J05Rik	zinc finger, DBF-type containing 2	protein-coding	0.020000	0.442786	
mm_151816.1	chr19	5503654	5503854	-	1	NA	NA	NA	33	NM_023781	75555	Mm.440432	NM_023781	ENSMUSG00000100937	1700020D05Rik	mage-g2	RIKEN cDNA 1700020D05 gene	protein-coding	0.080000	0.686567	
mm_26103.1	chr3	137340939	137341139	+	1	NA	NA	NA	-39	NM_001163522	59308	Mm.27343	NM_016885	ENSMUSG00000054690	Emcn	0610012K22Rik|AI315669|Muc14	endomucin	protein-coding	0.010000	0.422886	
mm_100309.1	chr11	117976240	117976440	+	1	NA	NA	NA	-6974	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.020000	0.621891	
mm_64632.1	chr7	3693467	3693667	-	1	NA	NA	NA	-42	NM_029934	77582	Mm.397541	NM_029934	ENSMUSG00000035596	Mboat7	5730589L02Rik|BB1|Leng4|Lpiat|Lpiat1|mBB1	membrane bound O-acyltransferase domain containing 7	protein-coding	0.045000	0.552239	
mm_154000.1	chr19	52264853	52265053	-	1	NA	NA	NA	656	NM_008386	16333	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding	0.025000	0.487562	
mm_170305.1	chr18	34945879	34946079	-	1	NA	NA	NA	8372	NM_010481	15526	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.010000	0.402985	
mm_48042.1	chr5	136423006	136423206	-	1	NA	NA	NA	-47303	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	0.005000	0.398010	-4(ATCTTTTAAAGG,-,0.00),-3(TCTTTTAAAGGT,+,0.00)
mm_127410.1	chr15	101254415	101254615	+	1	NA	NA	NA	-12331	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.065000	0.681592	
mm_149798.1	chr19	23675751	23675951	+	1	NA	NA	NA	-11549	NM_028208	72351	Mm.474795	NM_028208	ENSMUSG00000074925	Ptar1	1700084D09Rik|2010013L17Rik|4930428J16Rik|AI449677	protein prenyltransferase alpha subunit repeat containing 1	protein-coding	0.035000	0.497512	
mm_165393.1	chr2	131936720	131936920	+	1	NA	NA	NA	-14041	NM_001278257	26434	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion protein dublet	protein-coding	0.030000	0.582090	
mm_39215.1	chr4	156185982	156186182	-	1	NA	NA	NA	11406	NM_021604	11603	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0.055000	0.651741	
mm_157144.1	chrX	9460610	9460810	-	1	NA	NA	NA	8614	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.452736	
mm_44566.1	chr5	24685327	24685527	-	1	NA	NA	NA	-388	NM_016736	53312	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0.030000	0.507463	
mm_120259.1	chr14	63046875	63047075	+	1	NA	NA	NA	-16	NM_001034910	619548	Mm.387101	NM_001034910	ENSMUSG00000054763	Defb42	BD-42|Defb44|mBD-42	defensin beta 42	protein-coding	0.010000	0.537313	
mm_121713.1	chr14	16173221	16173421	-	1	NA	NA	NA	-75993	NM_021504	59007	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	0.000000	0.373134	
mm_142125.1	chr17	35897229	35897429	-	1	NA	NA	NA	49	NM_001033630	69662	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	0.135000	0.756219	
mm_29891.1	chr3	131271978	131272178	-	1	NA	NA	NA	23	NM_008212	15107	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.095000	0.721393	
mm_82792.1	chr9	29411663	29411863	-	1	NA	NA	NA	551366	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.080000	0.661692	
mm_29846.1	chr3	129901253	129901453	-	1	NA	NA	NA	-62	NM_009811	12368	Mm.281379	NM_009811	ENSMUSG00000027997	Casp6	CASP-6|Mch2	caspase 6	protein-coding	0.045000	0.641791	
mm_49186.1	chr6	15185346	15185546	+	1	NA	NA	NA	-60	NM_212435	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.020000	0.447761	
mm_132841.1	chr16	45936212	45936412	+	1	NA	NA	NA	74101	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.005000	0.522388	
mm_68297.1	chr7	105739041	105739241	-	1	NA	NA	NA	-1756	NM_133951	101867	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.005000	0.487562	
mm_60946.1	chr7	46986723	46986923	+	1	NA	NA	NA	10191	NR_033461	629141	Mm.229259	NR_033461	ENSMUSG00000056509	Gm9999	ENSMUSG00000056509	predicted gene 9999	ncRNA	0.005000	0.522388	
mm_54349.1	chr6	30896660	30896860	-	1	NA	NA	NA	34	NM_017478	54160	Mm.39896	NM_017478	ENSMUSG00000025607	Copg2	AW227625|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding	0.115000	0.701493	
mm_146246.1	chr18	77732931	77733131	+	1	NA	NA	NA	18847	NR_027978	67640	Mm.482903	NM_026289		4930465K10Rik	-	RIKEN cDNA 4930465K10 gene	ncRNA	0.035000	0.517413	
mm_171481.1	chr4	145868718	145868918	+	1	NA	NA	NA	31599	NR_033612	236069	Mm.276881	NR_033612	ENSMUSG00000096233	Gm13238	OTTMUSG00000011065	carnitine deficiency-associated gene expressed in ventricle 3 pseudogene	pseudo	0.015000	0.517413	
mm_49829.1	chr6	37806597	37806797	+	1	NA	NA	NA	-64114	NM_001272064	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.035000	0.601990	
mm_57673.1	chr6	128492092	128492292	-	1	NA	NA	NA	34528	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.010000	0.437811	
mm_124739.1	chr15	6592753	6592953	+	1	NA	NA	NA	13006	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.010000	0.388060	
mm_116700.1	chr13	50443755	50443955	-	1	NA	NA	NA	-23452	NM_001033400	328250	Mm.315205	NM_001033400	ENSMUSG00000071909	Nutm2	Fam22|Gm806	NUT family member 2	protein-coding	0.010000	0.497512	
mm_171779.1	chr5	109996430	109996630	+	1	NA	NA	NA	3	NM_145563	69504	Mm.441438	NM_145563	ENSMUSG00000066613	Zfp932	2310001H12Rik|Znf431	zinc finger protein 932	protein-coding	0.035000	0.572139	
mm_96908.1	chr11	70459377	70459577	+	1	NA	NA	NA	-145	NM_001029929	574428	Mm.472771	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.050000	0.567164	
mm_120768.1	chr14	73509935	73510135	+	1	NA	NA	NA	-14	NM_026119	67381	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0.085000	0.616915	
mm_136188.1	chr16	89010662	89010862	-	1	NA	NA	NA	-3	NM_001191018	68740	Mm.69020	NM_001191018	ENSMUSG00000095992	Krtap22-2	1110032D16Rik	keratin associated protein 22-2	protein-coding	0.015000	0.497512	-35(CAGTATAAAAGG,-,0.00)
mm_27625.1	chr3	59344344	59344544	-	1	NA	NA	NA	-188	NM_001162884	242050	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.055000	0.646766	
mm_172807.1	chr9	123461701	123461901	+	1	NA	NA	NA	-16900	NM_013860	29806	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.030000	0.532338	
mm_37964.1	chr4	133417050	133417250	-	1	NA	NA	NA	47374	NR_039582	100628620		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	0.035000	0.582090	
mm_56046.1	chr6	86737608	86737808	-	1	NA	NA	NA	-4330	NM_011818	23885	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	0.025000	0.402985	
mm_51409.1	chr6	78380630	78380830	+	1	NA	NA	NA	21	NM_011259	19694	Mm.2552	NM_011259	ENSMUSG00000079516	Reg3a	AV063448	regenerating islet-derived 3 alpha	protein-coding	0.000000	0.417910	
mm_81013.1	chr9	104063626	104063826	+	1	NA	NA	NA	23	NM_175324	102632	Mm.41274	NM_175324	ENSMUSG00000090150	Acad11	5730439E10Rik|AI987948	acyl-Coenzyme A dehydrogenase family, member 11	protein-coding	0.060000	0.636816	
mm_85175.1	chr9	96525172	96525372	-	1	NA	NA	NA	-46597	NM_001311135	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.030000	0.577114	
mm_92203.1	chr10	68136618	68136818	-	1	NA	NA	NA	142008	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.030000	0.597015	
mm_329.1	chr1	24864211	24864411	+	1	NA	NA	NA	185393	NM_001310483	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.000000	0.358209	
mm_67357.1	chr7	79837563	79837763	-	1	NA	NA	NA	4689	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.005000	0.517413	-3(GCTCTTATGCCC,+,0.00)
mm_20717.1	chr2	134644061	134644261	-	1	NA	NA	NA	-40	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding	0.075000	0.676617	
mm_92930.1	chr10	84526880	84527080	-	1	NA	NA	NA	6908	NM_175451	216197	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.005000	0.353234	-7(TTTTTTATACTC,+,0.00)
mm_98328.1	chr11	90586453	90586653	+	1	NA	NA	NA	51555	NM_011505	20913	Mm.207203	NM_011505	ENSMUSG00000020546	Stxbp4	6030470M02Rik|Synip	syntaxin binding protein 4	protein-coding	0.025000	0.492537	
mm_114462.1	chr13	67660273	67660473	+	1	NA	NA	NA	-22620	NM_183146	212281	Mm.342918	NM_183146	ENSMUSG00000021510	Zfp729a	A530054K11Rik|Rslcan3	zinc finger protein 729a	protein-coding	0.005000	0.412935	-51(GGCCCTTAAAGA,-,0.00),-50(GCCCTTAAAGAG,-,0.00),-48(CCTTAAAGAGGA,+,0.00)
mm_81275.1	chr9	108145887	108146087	+	1	NA	NA	NA	9132	NR_126077	76873	Mm.436935	NR_126077	ENSMUSG00000102224	4930447F24Rik	-	RIKEN cDNA 4930447F24 gene	ncRNA	0.015000	0.567164	
mm_100786.1	chr11	4849010	4849210	-	1	NA	NA	NA	434	NM_001252250	18016	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	0.060000	0.691542	
mm_41995.1	chr5	107830129	107830329	+	1	NA	NA	NA	67	NM_001276397	73318	Mm.441500	NM_028502	ENSMUSG00000063447	Ube2d2b	1700013N18Rik	ubiquitin-conjugating enzyme E2D 2B	protein-coding	0.075000	0.626866	
mm_54945.1	chr6	48572725	48572925	-	1	NA	NA	NA	-23	NM_001347167	71660	Mm.28231	NM_027852	ENSMUSG00000009281	Rarres2	0610007L05Rik|AI303516	retinoic acid receptor responder (tazarotene induced) 2	protein-coding	0.020000	0.547264	
mm_159947.1	chr6	85423786	85423986	+	1	NA	NA	NA	0	NM_001007472	384452	Mm.347883	NM_001007472	ENSMUSG00000068302	Noto	Flh|MmNot|Not|tc	notochord homeobox	protein-coding	0.030000	0.567164	
mm_149230.1	chr19	10182774	10182974	+	1	NA	NA	NA	-14	NM_146094	76267	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0.135000	0.711443	
mm_155164.1	chrX	53002072	53002272	+	1	NA	NA	NA	14094	NM_013556	15452	Mm.299381	NM_013556	ENSMUSG00000025630	Hprt	C81579|HPGRT|Hprt1	hypoxanthine guanine phosphoribosyl transferase	protein-coding	0.005000	0.422886	
mm_82801.1	chr9	29468226	29468426	-	1	NA	NA	NA	494803	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.000000	0.442786	
mm_167589.1	chr9	46240875	46241075	+	1	NA	NA	NA	131	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.015000	0.582090	53(GGCTTTAAATGA,-,0.00)
mm_105446.1	chr11	104442162	104442362	-	1	NA	NA	NA	29	NM_001081045	76719	Mm.136418	NM_001081045	ENSMUSG00000018412	Kansl1	1700081L11Rik|9430041J06Rik|mKIAA1267	KAT8 regulatory NSL complex subunit 1	protein-coding	0.135000	0.711443	
mm_55606.1	chr6	71831085	71831285	-	1	NA	NA	NA	-135	NM_001253681	76614	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	0.065000	0.547264	
mm_99469.1	chr11	102435946	102436146	+	1	NA	NA	NA	5724	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.045000	0.616915	
mm_168797.1	chr1	21961293	21961493	-	1	NA	NA	NA	549	NM_001160139	226922	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	0.130000	0.766169	
mm_145543.1	chr18	60807918	60808118	+	1	NA	NA	NA	-4058	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.025000	0.577114	
mm_60873.1	chr7	45942196	45942396	+	1	NA	NA	NA	13898	NM_001033243	211535	Mm.227539	NM_001033243	ENSMUSG00000040189	Ccdc114	-	coiled-coil domain containing 114	protein-coding	0.015000	0.557214	
mm_47306.1	chr5	122396797	122396997	-	1	NA	NA	NA	5019	NM_019824	56378	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.030000	0.577114	
mm_168840.1	chr12	23427024	23427224	-	1	NA	NA	NA	-416881	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA	0.115000	0.746269	
mm_134452.1	chr16	18407911	18408111	-	1	NA	NA	NA	5483	NM_001111063	12846	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.025000	0.597015	
mm_134598.1	chr16	20621119	20621319	-	1	NA	NA	NA	59	NM_028420	73047	Mm.425977	NM_028420	ENSMUSG00000051146	Camk2n2	2900075A18Rik	calcium/calmodulin-dependent protein kinase II inhibitor 2	protein-coding	0.095000	0.681592	
mm_91664.1	chr10	42999055	42999255	-	1	NA	NA	NA	138643	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.005000	0.462687	
mm_11380.1	chr2	31245811	31246011	+	1	NA	NA	NA	-12	NM_019681	14299	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.140000	0.746269	
mm_13996.1	chr2	121934733	121934933	+	1	NA	NA	NA	-21168	NM_001290992	329506	Mm.249405	NM_212450	ENSMUSG00000033411	Ctdspl2	D2Ertd485e	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	protein-coding	0.000000	0.378109	
mm_144671.1	chr18	34624525	34624725	+	1	NA	NA	NA	1	NM_001166407	19348	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	0.075000	0.517413	
mm_146788.1	chr18	20114608	20114808	-	1	NA	NA	NA	65	NM_001291804	13505	Mm.33740	NM_013504	ENSMUSG00000044322	Dsc1	1110020A10Rik|AI507491	desmocollin 1	protein-coding	0.005000	0.542289	
mm_9374.1	chr1	172210016	172210216	-	1	NA	NA	NA	-3312	NM_011063	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.015000	0.482587	
mm_29196.1	chr3	106762049	106762249	-	1	NA	NA	NA	28000	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.005000	0.373134	76(AGCCCTATAAGG,-,0.00)
mm_18094.1	chr2	44986447	44986647	-	1	NA	NA	NA	36630	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.005000	0.313433	
mm_115436.1	chr13	117601730	117601930	+	1	NA	NA	NA	-490	NM_010408	15165	Mm.343429	NM_010408	ENSMUSG00000021730	Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding	0.010000	0.482587	
mm_30452.1	chr3	153866517	153866717	-	1	NA	NA	NA	-14193	NR_040373	72317	Mm.440147	NR_040373	ENSMUSG00000086438	Asb17os	2510003D18Rik	ankyrin repeat and SOCS box-containing 17, opposite strand	ncRNA	0.005000	0.338308	
mm_103609.1	chr11	78512027	78512227	-	1	NA	NA	NA	41	NM_199199	195040	Mm.383431	NM_199199	ENSMUSG00000051232	Tmem199	AI316787|AI848469|R74819	transmembrane protein 199	protein-coding	0.100000	0.676617	
mm_147139.1	chr18	36453733	36453933	-	1	NA	NA	NA	662	NM_026027	67199	Mm.30184	NM_026027	ENSMUSG00000024346	Pfdn1	2700086I23Rik|AA408327|AU044714	prefoldin 1	protein-coding	0.000000	0.348259	
mm_145650.1	chr18	61128963	61129163	+	1	NA	NA	NA	11595	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.035000	0.527363	
mm_22039.1	chr2	168206910	168207110	-	1	NA	NA	NA	102	NM_009628	11538	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0.120000	0.761194	
mm_94331.1	chr11	4316062	4316262	+	1	NA	NA	NA	49366	NM_001039537	16878	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.010000	0.537313	
mm_44470.1	chr5	23403197	23403397	-	1	NA	NA	NA	31056	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.030000	0.552239	-28(GCCTTTATAAAC,+,0.00),-28(GCCTTTATAAAC,-,0.00)
mm_85269.1	chr9	99436455	99436655	-	1	NA	NA	NA	157	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.145000	0.791045	
mm_32132.1	chr4	99193816	99194016	+	1	NA	NA	NA	-18	NM_175029	242557	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.035000	0.512438	
mm_55358.1	chr6	56923391	56923591	-	1	NA	NA	NA	441	NM_026004	107569	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0.040000	0.482587	
mm_120429.1	chr14	65730943	65731143	+	1	NA	NA	NA	64640	NM_001168318	71145	Mm.83840	NM_028903	ENSMUSG00000022032	Scara5	4932433F15Rik|4933425F03Rik|AV278087|Tesr	scavenger receptor class A, member 5	protein-coding	0.065000	0.631841	
mm_122673.1	chr14	52008604	52008804	-	1	NA	NA	NA	5854	NM_001253695	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.030000	0.601990	
mm_18497.1	chr2	62606339	62606539	-	1	NA	NA	NA	-32418	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.040000	0.447761	
mm_110681.1	chr12	67082020	67082220	-	1	NA	NA	NA	140429	NM_001193266	320772	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	0.000000	0.308458	-48(CCCTTTATGTGG,+,0.00)
mm_64214.1	chr7	141481957	141482157	+	1	NA	NA	NA	5677	NM_001252588	64540	Mm.489619	NM_053082	ENSMUSG00000025511	Tspan4	AI325509|AI746565|D130042I01Rik|NAG-2|Tm4sf7|Tspan-4	tetraspanin 4	protein-coding	0.150000	0.791045	
mm_165581.1	chr3	28581089	28581289	+	1	NA	NA	NA	-116714	NM_031197	20526	Mm.18443	NM_031197	ENSMUSG00000027690	Slc2a2	AI266973|Glut-2|Glut2	solute carrier family 2 (facilitated glucose transporter), member 2	protein-coding	0.020000	0.482587	
mm_65984.1	chr7	30457316	30457516	-	1	NA	NA	NA	99	NM_172898	243911	Mm.113908	NM_172898	ENSMUSG00000036915	Kirrel2	C330019F22Rik|NEPH3|NLG1	kin of IRRE like 2 (Drosophila)	protein-coding	0.040000	0.611940	-20(CCATTTATAGCT,+,0.00)
mm_27665.1	chr3	65380688	65380888	-	1	NA	NA	NA	11765	NM_026155	67437	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.005000	0.343284	
mm_173011.1	chrM	323	523	+	1	NA	NA	NA	NA	NA									0.030000	0.318408	
mm_25928.1	chr3	131206422	131206622	+	1	NA	NA	NA	65579	NM_008212	15107	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.000000	0.328358	
mm_14966.1	chr2	152081718	152081918	+	1	NA	NA	NA	289	NM_001160410	545474	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.135000	0.701493	-34(TCCCATATAAAG,-,0.00),-32(CCATATAAAGCC,+,0.00)
mm_44304.1	chr5	8996812	8997012	-	1	NA	NA	NA	234	NM_023733	74114	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.060000	0.616915	
mm_122379.1	chr14	40295465	40295665	-	1	NA	NA	NA	597400	NM_177816	328381	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.000000	0.417910	
mm_50640.1	chr6	51330609	51330809	+	1	NA	NA	NA	-49001	NR_110455	625167	Mm.389772	NR_110455	ENSMUSG00000107660	Gm6559	EG625167	predicted gene 6559	ncRNA	0.015000	0.497512	
mm_66827.1	chr7	48748094	48748294	-	1	NA	NA	NA	-40809	NM_028031	243983	Mm.279116	NM_028031	ENSMUSG00000030471	Zdhhc13	2410004E01Rik|C530010M18|HIP3RP|Hip14l|kojak|skc4	zinc finger, DHHC domain containing 13	protein-coding	0.010000	0.462687	
mm_15016.1	chr2	152604348	152604548	+	1	NA	NA	NA	121	NM_001037247	266620	Mm.330669	NM_001037247	ENSMUSG00000044863	Defb36	BD-36|Defb123|mBD-36	defensin beta 36	protein-coding	0.070000	0.611940	
mm_46600.1	chr5	107859111	107859311	-	1	NA	NA	NA	15896	NM_007964	14020	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0.010000	0.447761	
mm_152628.1	chr19	12486950	12487150	-	1	NA	NA	NA	14946	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.010000	0.542289	-40(GCCTTTATAAGT,-,0.00)
mm_60151.1	chr7	38379267	38379467	+	1	NA	NA	NA	-108019	NM_025390	66161	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0.035000	0.502488	
mm_39367.1	chr5	9266050	9266250	+	1	NA	NA	NA	-43	NM_172706	231014	Mm.130063	NM_172706	ENSMUSG00000056004	9330182L06Rik	Eig121l	RIKEN cDNA 9330182L06 gene	protein-coding	0.135000	0.756219	
mm_52658.1	chr6	117879922	117880122	+	1	NA	NA	NA	16945	NM_001001792	22685	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0.085000	0.552239	83(TTGTATAAAAAC,-,0.00)
mm_149170.1	chr19	9083602	9083802	+	1	NA	NA	NA	4254	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.015000	0.487562	
mm_43188.1	chr5	128603563	128603763	+	1	NA	NA	NA	2557	NM_175284	93897	Mm.197628	NM_175284	ENSMUSG00000081683	Fzd10	Fz-10	frizzled class receptor 10	protein-coding	0.005000	0.358209	
mm_160618.1	chr9	89211297	89211497	+	1	NA	NA	NA	207	NM_026829	107885	Mm.486274	NM_026829	ENSMUSG00000066442	Mthfs	1110034I12Rik|2310020H23Rik|AI119695	5, 10-methenyltetrahydrofolate synthetase	protein-coding	0.110000	0.686567	
mm_9020.1	chr1	166236816	166237016	-	1	NA	NA	NA	1828	NM_175296	98558	Mm.26189	NM_175296	ENSMUSG00000040629	Mael	4933405K18Rik|AU019877	maelstrom spermatogenic transposon silencer	protein-coding	0.000000	0.363184	24(ATCTATAAAAAG,-,0.00)
mm_40515.1	chr5	57810152	57810352	+	1	NA	NA	NA	92171	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.005000	0.363184	78(GCCTTTATATCC,+,0.00)
mm_57066.1	chr6	122571299	122571499	-	1	NA	NA	NA	17590	NM_009645	11628	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.005000	0.402985	
mm_135473.1	chr16	45910382	45910582	-	1	NA	NA	NA	-66104	NM_001252442	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology like domain, family B, member 2	protein-coding	0.020000	0.442786	
mm_49202.1	chr6	15365114	15365314	+	1	NA	NA	NA	179708	NM_001286607	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.005000	0.417910	-70(TCCTTTATGCCC,+,0.00),68(CCTTTTCAAGCC,+,0.00)
mm_72924.1	chr8	91106302	91106502	+	1	NA	NA	NA	27625	NM_001302337	14339	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	0.025000	0.552239	
mm_126184.1	chr15	78615671	78615871	+	1	NA	NA	NA	18724	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.030000	0.532338	
mm_30319.1	chr3	151731602	151731802	-	1	NA	NA	NA	18257	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.005000	0.383085	
mm_113076.1	chr13	23806971	23807171	+	1	NA	NA	NA	44	NM_144836	218103	Mm.24030	NM_144836	ENSMUSG00000036110	Slc17a2	C730032N17Rik|NPT3	solute carrier family 17 (sodium phosphate), member 2	protein-coding	0.015000	0.378109	
mm_87500.1	chr10	51677678	51677878	+	1	NA	NA	NA	18	NM_001159389	320995	Mm.109190	NM_177306	ENSMUSG00000019900	Rfx6	4930572O07Rik|Rfxdc1	regulatory factor X, 6	protein-coding	0.080000	0.706468	
mm_153126.1	chr19	34165834	34166034	-	1	NA	NA	NA	107	NM_024204	52024	Mm.183030	NM_024204	ENSMUSG00000024774	Ankrd22	5430429D21Rik|D19Ertd675e	ankyrin repeat domain 22	protein-coding	0.005000	0.467662	
mm_119988.1	chr14	55578452	55578652	+	1	NA	NA	NA	58	NM_011189	19186	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0.060000	0.646766	
mm_113348.1	chr13	31806776	31806976	+	1	NA	NA	NA	230	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.060000	0.497512	
mm_160398.1	chr8	70755445	70755645	+	1	NA	NA	NA	866	NM_001166399	19339	Mm.5083	NM_009001	ENSMUSG00000031840	Rab3a	-	RAB3A, member RAS oncogene family	protein-coding	0.050000	0.532338	
mm_116675.1	chr13	49237503	49237703	-	1	NA	NA	NA	10560	NM_025491	66329	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.030000	0.587065	
mm_27863.1	chr3	79158686	79158886	-	1	NA	NA	NA	-12911	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.020000	0.562189	
mm_93994.1	chr10	127534453	127534653	-	1	NA	NA	NA	6	NM_183297	104080	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.140000	0.805970	
mm_31744.1	chr4	63283411	63283611	+	1	NA	NA	NA	26660	NR_030477	735262		NR_030477	ENSMUSG00000070102	Mir455	Mirn455|mir-455|mmu-mir-455	microRNA 455	ncRNA	0.010000	0.527363	
mm_128458.1	chr15	50785072	50785272	-	1	NA	NA	NA	103877	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.338308	
mm_170610.1	chr19	5845465	5845665	-	1	NA	NA	NA	-85	NR_003513	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.050000	0.527363	53(GAGTATAAAAGC,-,0.00)
mm_24611.1	chr3	93447390	93447590	+	1	NA	NA	NA	5160	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.075000	0.611940	
mm_5101.1	chr1	5020218	5020418	-	1	NA	NA	NA	-779	NM_021374	58175	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0.065000	0.587065	
mm_144169.1	chr18	6516570	6516770	+	1	NA	NA	NA	-562	NM_007935	13831	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1 (Drosophila)	protein-coding	0.020000	0.437811	
mm_150431.1	chr19	37536522	37536722	+	1	NA	NA	NA	-13796	NM_175353	107371	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0.010000	0.467662	
mm_150600.1	chr19	40738804	40739004	+	1	NA	NA	NA	79134	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.025000	0.532338	
mm_55682.1	chr6	72610927	72611127	-	1	NA	NA	NA	5721	NM_009444	22135	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	0.005000	0.457711	
mm_70713.1	chr8	15060230	15060430	+	1	NA	NA	NA	2677	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.025000	0.502488	
mm_91118.1	chr10	19321617	19321817	-	1	NA	NA	NA	-34822	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20|oligo3	oligodendrocyte transcription factor 3	protein-coding	0.010000	0.477612	
mm_27348.1	chr3	50414830	50415030	-	1	NA	NA	NA	28683	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.373134	
mm_35697.1	chr4	44152294	44152494	-	1	NA	NA	NA	15144	NM_175201	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.020000	0.467662	
mm_167368.1	chr8	89130237	89130437	+	1	NA	NA	NA	-86175	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.020000	0.477612	
mm_57483.1	chr6	125253978	125254178	-	1	NA	NA	NA	-11447	NR_015527	73870	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.030000	0.527363	
mm_142577.1	chr17	46680753	46680953	-	1	NA	NA	NA	70	NM_001277311	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.105000	0.636816	
mm_116642.1	chr13	49127776	49127976	-	1	NA	NA	NA	20452	NM_029361	75607	Mm.342723	NM_029361	ENSMUSG00000037989	Wnk2	1810073P09Rik|AW122246|ESTM15|X83337|mKIAA1760	WNK lysine deficient protein kinase 2	protein-coding	0.040000	0.552239	
mm_156430.1	chrX	140998211	140998411	+	1	NA	NA	NA	-41600	NM_001164177	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	0.005000	0.636816	
mm_13876.1	chr2	119897469	119897669	+	1	NA	NA	NA	341	NM_013720	29808	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	0.105000	0.666667	
mm_171444.1	chr4	143546746	143546946	+	1	NA	NA	NA	-4854	NM_001113736	100040854	Mm.472683	NM_001113736	ENSMUSG00000070616	Gm13040	OTTMUSG00000010130	predicted gene 13040	protein-coding	0.015000	0.472637	
mm_16018.1	chr2	167503116	167503316	+	1	NA	NA	NA	-10342	NM_170756	263876	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	0.025000	0.547264	
mm_45356.1	chr5	65929152	65929352	-	1	NA	NA	NA	-37872	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.010000	0.567164	
mm_137865.1	chr17	31296706	31296906	+	1	NA	NA	NA	582	NM_001242427	224674	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.055000	0.592040	
mm_17931.1	chr2	35463414	35463614	-	1	NA	NA	NA	-2065	NM_001145821	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.030000	0.527363	
mm_84184.1	chr9	60141029	60141229	-	1	NA	NA	NA	91	NM_172444	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.030000	0.532338	
mm_55590.1	chr6	71502734	71502934	-	1	NA	NA	NA	8957	NM_001308303	22644	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	0.010000	0.398010	
mm_30454.1	chr3	153912104	153912304	-	1	NA	NA	NA	-1	NR_028095	19352	Mm.277831	NM_011231	ENSMUSG00000038975	Rabggtb	-	Rab geranylgeranyl transferase, b subunit	protein-coding	0.015000	0.378109	
mm_155595.1	chrX	81094501	81094701	+	1	NA	NA	NA	23957	NM_138751	192216	Mm.490421	NM_138751	ENSMUSG00000025666	Tmem47	3010015F07Rik|AI115536|BCMP1|Tm4sf10	transmembrane protein 47	protein-coding	0.005000	0.402985	
mm_131233.1	chr16	10479973	10480173	+	1	NA	NA	NA	1	NM_001302618	12265	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.015000	0.552239	
mm_169760.1	chr15	93679891	93680091	-	1	NA	NA	NA	-84100	NM_001033217	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.025000	0.497512	
mm_161875.1	chr18	37143948	37144148	+	1	NA	NA	NA	79	NM_001003672	353237	Mm.308500	NM_001003672	ENSMUSG00000102697	Pcdhac2	CNRc2	protocadherin alpha subfamily C, 2	protein-coding	0.085000	0.711443	
mm_75189.1	chr8	38359674	38359874	-	1	NA	NA	NA	-107572	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	0.010000	0.318408	
mm_148041.1	chr18	70276110	70276310	-	1	NA	NA	NA	-31626	NM_029346	75577	Mm.58214	NM_029346	ENSMUSG00000024512	Dynap	2310002L13Rik	dynactin associated protein	protein-coding	0.010000	0.422886	
mm_165346.1	chr2	118728231	118728431	-	1	NA	NA	NA	107	NM_177568	18796	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	0.015000	0.522388	
mm_18304.1	chr2	53152987	53153187	-	1	NA	NA	NA	38100	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.015000	0.323383	-5(GGCCTTTAATGC,-,0.00),-3(CCTTTAATGCCT,+,0.00),5(GCCTATAAAGTC,+,0.00)
mm_44930.1	chr5	36164917	36165117	-	1	NA	NA	NA	-39004	NM_175249	76943	Mm.44242	NM_175249	ENSMUSG00000043430	Psapl1	2310020A21Rik	prosaposin-like 1	protein-coding	0.010000	0.572139	
mm_132470.1	chr16	36693953	36694153	+	1	NA	NA	NA	75	NM_001285791	106347	Mm.17807	NM_134109	ENSMUSG00000022900	Ildr1	AU041483|AU044638	immunoglobulin-like domain containing receptor 1	protein-coding	0.080000	0.681592	
mm_151107.1	chr19	47863312	47863512	+	1	NA	NA	NA	-2133	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.005000	0.378109	
mm_159494.1	chr4	42950754	42950954	+	1	NA	NA	NA	-2240	NM_019874	56323	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.035000	0.547264	
mm_49939.1	chr6	39592504	39592704	+	1	NA	NA	NA	21	NM_026612	68198	Mm.29415	NM_026612	ENSMUSG00000002416	Ndufb2	1810011O01Rik|8kDa|AGGG|AI325567|CI-AGGG	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2	protein-coding	0.110000	0.686567	
mm_98212.1	chr11	87799795	87799995	+	1	NA	NA	NA	6111	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.035000	0.562189	
mm_158415.1	chrX	137119610	137119810	-	1	NA	NA	NA	616	NM_007957	13984	Mm.8017	NM_007957	ENSMUSG00000023443	Esx1	Spx1	extraembryonic, spermatogenesis, homeobox 1	protein-coding	0.045000	0.502488	
mm_110642.1	chr12	58268837	58269037	-	1	NA	NA	NA	321	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	0.025000	0.572139	
mm_157505.1	chrX	48868093	48868293	-	1	NA	NA	NA	9520	NM_001085499	209005	Mm.336054	NM_001085499	ENSMUSG00000079606	Gm595	-	predicted gene 595	protein-coding	0.010000	0.442786	
mm_1755.1	chr1	75509933	75510133	+	1	NA	NA	NA	2424	NM_001329843	16322	Mm.1100	NM_010564	ENSMUSG00000032968	Inha	AW555078	inhibin alpha	protein-coding	0.030000	0.611940	
mm_147304.1	chr18	39519320	39519520	-	1	NA	NA	NA	-32175	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.040000	0.522388	
mm_122263.1	chr14	34310269	34310469	-	1	NA	NA	NA	134	NM_029389	75698	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	0.115000	0.706468	
mm_119265.1	chr14	34052607	34052807	+	1	NA	NA	NA	-763	NM_172808	239029	Mm.477093	NM_172808	ENSMUSG00000047441	Antxrl	1700112N15Rik|4933430J11	anthrax toxin receptor-like	protein-coding	0.020000	0.567164	
mm_70672.1	chr8	14906307	14906507	+	1	NA	NA	NA	-5256	NM_172751	234094	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	0.025000	0.527363	-33(TGCTATAAAGGC,-,0.00)
mm_87815.1	chr10	60301986	60302186	+	1	NA	NA	NA	17625	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.005000	0.492537	25(GGCCTTTAGAGC,-,0.00),26(GCCTTTAGAGCG,+,0.00)
mm_56069.1	chr6	86790031	86790231	-	1	NA	NA	NA	3453	NM_013471	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.010000	0.462687	
mm_7280.1	chr1	97661289	97661489	-	1	NA	NA	NA	629	NM_133825	52392	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.195000	0.800995	
mm_16247.1	chr2	173158561	173158761	+	1	NA	NA	NA	5588	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.035000	0.542289	
mm_89255.1	chr10	87859184	87859384	+	1	NA	NA	NA	232	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.015000	0.422886	
mm_31601.1	chr4	57894070	57894270	+	1	NA	NA	NA	22094	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.005000	0.393035	
mm_121486.1	chr14	121230837	121231037	+	1	NA	NA	NA	148293	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.010000	0.373134	-6(TTTTTTAAGGAC,+,0.00)
mm_16957.1	chr2	17390898	17391098	-	1	NA	NA	NA	-172516	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	0.015000	0.402985	
mm_51932.1	chr6	91515932	91516132	+	1	NA	NA	NA	-3	NM_026309	67678	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.090000	0.532338	
mm_166470.1	chr5	142905896	142906096	-	1	NA	NA	NA	758	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.130000	0.736318	
mm_11394.1	chr2	31454679	31454879	+	1	NA	NA	NA	-15491	NM_007494	11898	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.010000	0.557214	
mm_107246.1	chr12	26479214	26479414	+	1	NA	NA	NA	10099	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.000000	0.363184	
mm_90844.1	chr10	8756663	8756863	-	1	NA	NA	NA	129307	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.025000	0.497512	
mm_35009.1	chr4	3090176	3090376	-	1	NA	NA	NA	-81807	NM_001167534	100312470	Mm.480297	NM_001167534	ENSMUSG00000094798	Vmn1r2	Gm11776|OTTMUSG00000004179	vomeronasal 1 receptor 2	protein-coding	0.030000	0.373134	
mm_39335.1	chr5	8798549	8798749	+	1	NA	NA	NA	502	NM_011075	18669	Mm.146649	NM_011075	ENSMUSG00000028970	Abcb1b	Abcb1|Mdr1|Mdr1b|Pgy-1|Pgy1|mdr	ATP-binding cassette, sub-family B (MDR/TAP), member 1B	protein-coding	0.060000	0.656716	
mm_83691.1	chr9	50561211	50561411	-	1	NA	NA	NA	-43	NM_025687	66654	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	0.120000	0.691542	
mm_121160.1	chr14	103008036	103008236	+	1	NA	NA	NA	-25499	NM_177715	239217	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0.000000	0.457711	
mm_68274.1	chr7	105596277	105596477	-	1	NA	NA	NA	3739	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.015000	0.398010	
mm_169346.1	chr14	18463491	18463691	+	1	NA	NA	NA	-131747	NM_009455	22194	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	0.005000	0.512438	-31(CCCTTTATAAGT,-,0.00)
mm_48676.1	chr5	146185216	146185416	-	1	NA	NA	NA	-12	NM_001008547	69282	Mm.373573	NM_001008547	ENSMUSG00000095040	1700001J03Rik	-	RIKEN cDNA 1700001J03 gene	protein-coding	0.010000	0.527363	
mm_112314.1	chr12	114932734	114932934	-	1	NA	NA	NA	-419140	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.010000	0.437811	
mm_63247.1	chr7	126589311	126589511	+	1	NA	NA	NA	-3594	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.015000	0.611940	
mm_82528.1	chr9	20667860	20668060	-	1	NA	NA	NA	15830	NM_023371	23988	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	0.010000	0.482587	53(GCCTTTTTATGG,-,0.00),55(CTTTTTATGGAT,+,0.00)
mm_60340.1	chr7	44343573	44343773	+	1	NA	NA	NA	31357	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.030000	0.646766	
mm_11505.1	chr2	32567650	32567850	+	1	NA	NA	NA	-3108	NM_010073	13481	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0.015000	0.636816	
mm_104550.1	chr11	96780222	96780422	-	1	NA	NA	NA	-2767	NM_001163389	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.040000	0.462687	
mm_54318.1	chr6	30245312	30245512	-	1	NA	NA	NA	-1609	NM_001169577	22214	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0.010000	0.378109	-67(CTCTTTTAAAAG,-,0.00),-66(TCTTTTAAAAGG,+,0.00),-66(TCTTTTAAAAGG,-,0.00),-65(CTTTTAAAAGGA,+,0.00)
mm_23474.1	chr3	60480760	60480960	+	1	NA	NA	NA	8030	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.417910	
mm_33359.1	chr4	129487065	129487265	+	1	NA	NA	NA	3605	NM_080442	58864	Mm.143802	NM_080442	ENSMUSG00000000411	Tssk3	1700014N07Rik|4930594I21Rik|Stk22c|Stk22d|Tsk-3|Tssk-3|Tssk3b	testis-specific serine kinase 3	protein-coding	0.030000	0.572139	
mm_63628.1	chr7	128373855	128374055	+	1	NA	NA	NA	44217	NM_026418	67865	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.030000	0.497512	
mm_129142.1	chr15	76200499	76200699	-	1	NA	NA	NA	8	NM_201390	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.025000	0.676617	
mm_47868.1	chr5	134639377	134639577	-	1	NA	NA	NA	-68	NM_033561	22384	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0.165000	0.800995	
mm_155861.1	chrX	101377174	101377374	+	1	NA	NA	NA	39	NM_008124	14618	Mm.21198	NM_008124	ENSMUSG00000047797	Gjb1	Cnx32|Cx32|connexin-32	gap junction protein, beta 1	protein-coding	0.010000	0.587065	
mm_29158.1	chr3	106032799	106032999	-	1	NA	NA	NA	-4	NM_001080816	229687	Mm.39224	NM_170594	ENSMUSG00000043873	Chil5	Bclp|Bclp1|Bclp2|Chi3l7	chitinase-like 5	protein-coding	0.005000	0.393035	38(TTTTAAAAAGCC,+,0.00)
mm_119289.1	chr14	34673776	34673976	+	1	NA	NA	NA	-52	NM_001004436	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.150000	0.726368	
mm_4220.1	chr1	171329538	171329738	+	1	NA	NA	NA	493	NM_011615	21945	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	0.105000	0.766169	
mm_173102.1	chrX	152910040	152910240	-	1	NA	NA	NA	-96329	NM_001137547	635253	Mm.426169	NM_001137547	ENSMUSG00000067215	Usp51	AV136873	ubiquitin specific protease 51	protein-coding	0.075000	0.592040	
mm_67331.1	chr7	79742872	79743072	-	1	NA	NA	NA	53	NM_011068	18631	Mm.20615	NM_011068	ENSMUSG00000030545	Pex11a	PEX11alpha	peroxisomal biogenesis factor 11 alpha	protein-coding	0.090000	0.686567	
mm_104679.1	chr11	97699464	97699664	-	1	NA	NA	NA	84	NM_001163308	22658	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	0.090000	0.676617	
mm_77257.1	chr8	115706879	115707079	-	1	NA	NA	NA	-85	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.100000	0.761194	
mm_165002.1	chr19	21778199	21778399	+	1	NA	NA	NA	-41	NM_001033759	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.080000	0.696517	
mm_13193.1	chr2	93200173	93200373	+	1	NA	NA	NA	12689	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.015000	0.547264	
mm_37113.1	chr4	116641044	116641244	-	1	NA	NA	NA	10530	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.015000	0.537313	
mm_71935.1	chr8	70302683	70302883	+	1	NA	NA	NA	-2	NM_021538	59042	Mm.28668	NM_021538	ENSMUSG00000055681	Cope	1110005D17Rik|Cope1	coatomer protein complex, subunit epsilon	protein-coding	0.075000	0.562189	
mm_172204.1	chr6	54177610	54177810	-	1	NA	NA	NA	-87148	NM_001311133	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.035000	0.482587	
mm_170504.1	chr19	24290810	24291010	-	1	NA	NA	NA	-10324	NM_008044	14297	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	0.035000	0.462687	-18(GTATTTAAAAAG,-,0.00)
mm_157704.1	chrX	62515989	62516189	-	1	NA	NA	NA	-20	NR_045443	75545	Mm.391270	NR_045442	ENSMUSG00000085757	1700019B21Rik	-	RIKEN cDNA 1700019B21 gene	ncRNA	0.000000	0.517413	
mm_10395.1	chr2	13573954	13574154	+	1	NA	NA	NA	-257	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.025000	0.552239	
mm_88758.1	chr10	80329874	80330074	+	1	NA	NA	NA	-171	NM_001204931	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.065000	0.671642	
mm_36177.1	chr4	62207820	62208020	-	1	NA	NA	NA	282	NM_001290353	22696	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0.005000	0.452736	
mm_84110.1	chr9	58370280	58370480	-	1	NA	NA	NA	-11	NM_028854	74286	Mm.252761	NM_028854	ENSMUSG00000036244	Tbc1d21	1700095K08Rik|MgcRabGAP	TBC1 domain family, member 21	protein-coding	0.005000	0.507463	-34(TCTCTTAAAAGG,-,0.00)
mm_63159.1	chr7	123462185	123462385	+	1	NA	NA	NA	-9	NM_007474	11833	Mm.273175	NM_007474	ENSMUSG00000030762	Aqp8	AI255744|AQP-8	aquaporin 8	protein-coding	0.020000	0.492537	40(GTCCTTTAAAAG,-,0.00),41(TCCTTTAAAAGC,-,0.00),42(CCTTTAAAAGCG,+,0.00)
mm_137642.1	chr17	28523223	28523423	+	1	NA	NA	NA	-7538	NM_026290	67645	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.105000	0.716418	
mm_47274.1	chr5	122002216	122002416	-	1	NA	NA	NA	45509	NM_007804	13048	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2|ENSMUSG00000072641	cut-like homeobox 2	protein-coding	0.050000	0.611940	
mm_66800.1	chr7	47133510	47133710	-	1	NA	NA	NA	74	NM_013643	19259	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0.025000	0.492537	-40(GAGCATTAAAGG,-,0.00),-38(GCATTAAAGGAC,+,0.00)
mm_26803.1	chr3	10022477	10022677	-	1	NA	NA	NA	9992	NM_001272098	16592	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0.010000	0.462687	
mm_73322.1	chr8	105269747	105269947	+	1	NA	NA	NA	46	NM_001256044	26386	Mm.89204	NM_011939	ENSMUSG00000033249	Hsf4	HSF 4|HSTF 4|HSTF4|ldis1|mHSF4	heat shock transcription factor 4	protein-coding	0.115000	0.741294	
mm_165710.1	chr3	98592332	98592532	+	1	NA	NA	NA	-28394	NM_008294	15495	Mm.14309	NM_008294	ENSMUSG00000095143	Hsd3b4	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	protein-coding	0.000000	0.338308	
mm_44802.1	chr5	32985532	32985732	-	1	NA	NA	NA	-33184	NM_011738	22629	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.005000	0.422886	
mm_30291.1	chr3	148989463	148989663	-	1	NA	NA	NA	-34928	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.050000	0.616915	
mm_33990.1	chr4	137862160	137862360	+	1	NA	NA	NA	23	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.100000	0.701493	
mm_148572.1	chr19	4859316	4859516	+	1	NA	NA	NA	4287	NM_019861	56464	Mm.29561	NM_019861	ENSMUSG00000083282	Ctsf	AI481912	cathepsin F	protein-coding	0.025000	0.507463	
mm_29671.1	chr3	122801889	122802089	-	1	NA	NA	NA	-9	NR_045168	71647	Mm.449992	NR_045168	ENSMUSG00000106583	4930447N08Rik	-	RIKEN cDNA 4930447N08 gene	ncRNA	0.040000	0.587065	
mm_153122.1	chr19	33626242	33626442	-	1	NA	NA	NA	-1093	NM_001323251	668106	Mm.379675	NM_001323251		Gm8978	EG668106	predicted gene 8978	protein-coding	0.005000	0.298507	-68(TTCTATAAAAGG,-,0.00)
mm_34716.1	chr4	152125028	152125228	+	1	NA	NA	NA	3797	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.055000	0.582090	
mm_76720.1	chr8	94838196	94838396	-	1	NA	NA	NA	44	NM_134141	109006	Mm.27582	NM_134141	ENSMUSG00000031781	Ciapin1	2810413N20Rik|AA617265|AU021794|anamorsin	cytokine induced apoptosis inhibitor 1	protein-coding	0.140000	0.686567	
mm_4774.1	chr1	182764155	182764355	+	1	NA	NA	NA	-651	NM_144796	96935	Mm.331052	NM_144796	ENSMUSG00000038576	Susd4	AI848994|E430021N18Rik|N28096	sushi domain containing 4	protein-coding	0.145000	0.761194	
mm_121613.1	chr14	8258899	8259099	-	1	NA	NA	NA	20	NM_053115	93732	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0.005000	0.507463	
mm_12205.1	chr2	66021509	66021709	+	1	NA	NA	NA	89744	NM_001290665	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding	0.010000	0.497512	
mm_169001.1	chr13	100909817	100910017	-	1	NA	NA	NA	-76490	NM_022885	69048	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.025000	0.442786	
mm_99496.1	chr11	102881171	102881371	+	1	NA	NA	NA	27	NM_028492	73293	Mm.67659	NM_028492	ENSMUSG00000020930	Ccdc103	1700039D13Rik	coiled-coil domain containing 103	protein-coding	0.045000	0.552239	
mm_6753.1	chr1	84037180	84037380	-	1	NA	NA	NA	181681	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.407960	
mm_43324.1	chr5	134987052	134987252	+	1	NA	NA	NA	938	NM_009902	12739	Mm.158662	NM_009902	ENSMUSG00000070473	Cldn3	AI182374|Cpetr2|mRVP1	claudin 3	protein-coding	0.085000	0.651741	
mm_50354.1	chr6	48594113	48594313	+	1	NA	NA	NA	330	NM_001079904	58887	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	0.130000	0.711443	
mm_51615.1	chr6	85154899	85155099	+	1	NA	NA	NA	-17235	NM_011467	20751	Mm.28393	NM_011467	ENSMUSG00000033735	Spr	AA409688|ENSMUSG00000071345|Gm10328	sepiapterin reductase	protein-coding	0.045000	0.621891	
mm_103287.1	chr11	72266531	72266731	-	1	NA	NA	NA	-27	NM_001004148	237831	Mm.340778	NM_001004148	ENSMUSG00000020805	Slc13a5	Indy|NaC2/NaCT|Nact|mINDY	solute carrier family 13 (sodium-dependent citrate transporter), member 5	protein-coding	0.075000	0.621891	-7(CCCCTTTTAAGC,-,0.00),-5(CCTTTTAAGCTC,+,0.00)
mm_30202.1	chr3	144720226	144720426	-	1	NA	NA	NA	9	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.165000	0.796020	
mm_102935.1	chr11	69601011	69601211	-	1	NA	NA	NA	4849	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.010000	0.482587	
mm_45424.1	chr5	66618661	66618861	-	1	NA	NA	NA	56	NM_009686	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.110000	0.726368	
mm_103095.1	chr11	69921184	69921384	-	1	NA	NA	NA	-9	NM_001166595	276770	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.115000	0.706468	
mm_54340.1	chr6	30669295	30669495	-	1	NA	NA	NA	24354	NM_031998	83922	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	0.020000	0.462687	
mm_101844.1	chr11	48816817	48817017	-	1	NA	NA	NA	474	NM_145377	211007	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0.060000	0.691542	-37(GGGTTTATGAGC,-,0.00)
mm_26061.1	chr3	135826161	135826361	+	1	NA	NA	NA	471	NM_001135150	67547	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.040000	0.606965	
mm_166077.1	chr4	137277384	137277584	+	1	NA	NA	NA	-151	NM_009523	22417	Mm.20355	NM_009523	ENSMUSG00000036856	Wnt4	Wnt-4	wingless-type MMTV integration site family, member 4	protein-coding	0.170000	0.840796	
mm_70996.1	chr8	28520559	28520759	+	1	NA	NA	NA	-435806	NR_033590	666422	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	0.005000	0.447761	
mm_16442.1	chr2	180439941	180440141	+	1	NA	NA	NA	-20937	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.005000	0.537313	
mm_41037.1	chr5	86083179	86083379	+	1	NA	NA	NA	11533	NM_001310639	56792	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.010000	0.457711	
mm_62690.1	chr7	110061618	110061818	+	1	NA	NA	NA	16	NM_009281	20841	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0.050000	0.522388	
mm_83920.1	chr9	56620238	56620438	-	1	NA	NA	NA	15310	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.040000	0.611940	
mm_80383.1	chr9	75441384	75441584	+	1	NA	NA	NA	-40	NM_001039522	235497	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0.090000	0.636816	
mm_63014.1	chr7	120982451	120982651	+	1	NA	NA	NA	42	NM_028955	74466	Mm.189707	NM_028955	ENSMUSG00000030877	Mfsd13b	4933427G17Rik	major facilitator superfamily domain containing 13B	protein-coding	0.075000	0.606965	
mm_56416.1	chr6	97252555	97252755	-	1	NA	NA	NA	125	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.005000	0.378109	
mm_25739.1	chr3	122899260	122899460	+	1	NA	NA	NA	4288	NM_007980	14079	Mm.28398	NM_007980	ENSMUSG00000023057	Fabp2	Fabpi|I-FABP	fatty acid binding protein 2, intestinal	protein-coding	0.015000	0.402985	
mm_54594.1	chr6	38254032	38254232	-	1	NA	NA	NA	-123	NM_194061	330286	Mm.277163	NM_194061	ENSMUSG00000063455	D630045J12Rik	Kiaa1549|mKIAA1549	RIKEN cDNA D630045J12 gene	protein-coding	0.185000	0.840796	
mm_61750.1	chr7	82755656	82755856	+	1	NA	NA	NA	-112	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.025000	0.547264	
mm_133588.1	chr16	91424781	91424981	+	1	NA	NA	NA	18646	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.040000	0.537313	-87(GCCCAGAAAAAG,-,0.00)
mm_69303.1	chr7	128376065	128376265	-	1	NA	NA	NA	42007	NM_026418	67865	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.010000	0.572139	
mm_102586.1	chr11	61854990	61855190	-	1	NA	NA	NA	2	NM_013881	29869	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.175000	0.761194	
mm_161285.1	chr14	26042611	26042811	-	1	NA	NA	NA	26	NM_001270503	100039246	Mm.425864	NM_001270503	ENSMUSG00000072674	Plac9b	ENSMUSG00000072674|Gm10393	placenta specific 9b	protein-coding	0.105000	0.681592	
mm_31054.1	chr4	41190848	41191048	+	1	NA	NA	NA	54927	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.020000	0.537313	27(CCTTTTATGGAC,+,0.00)
mm_78584.1	chr9	37348445	37348645	+	1	NA	NA	NA	-153	NM_001081429	245902	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	0.060000	0.527363	
mm_117866.1	chr13	98846706	98846906	-	1	NA	NA	NA	-31357	NM_172591	218503	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.005000	0.258706	
mm_147322.1	chr18	42253665	42253865	-	1	NA	NA	NA	8306	NM_134137	107045	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	0.010000	0.373134	
mm_79607.1	chr9	58603641	58603841	+	1	NA	NA	NA	21501	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.000000	0.273632	
mm_41247.1	chr5	88782098	88782298	+	1	NA	NA	NA	17185	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.005000	0.447761	
mm_160055.1	chr7	3844951	3845151	-	1	NA	NA	NA	0	NM_011089	18725	Mm.482470	NM_011089	ENSMUSG00000089942	Pira2	6M23	paired-Ig-like receptor A2	protein-coding	0.000000	0.562189	
mm_65096.1	chr7	19271710	19271910	-	1	NA	NA	NA	44	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.085000	0.611940	-77(GCCCCTTTAAGG,-,0.00),-76(CCCCTTTAAGGC,-,0.00),-75(CCCTTTAAGGCG,+,0.00),-74(CCTTTAAGGCGC,+,0.00)
mm_123119.1	chr14	56102365	56102565	-	1	NA	NA	NA	109	NM_007800	13035	Mm.4858	NM_007800	ENSMUSG00000040314	Ctsg	CatG|VSP	cathepsin G	protein-coding	0.015000	0.517413	
mm_111472.1	chr12	98577941	98578141	-	1	NA	NA	NA	172	NM_029911	72258	Mm.196158	NM_029911	ENSMUSG00000033854	Kcnk10	1700024D23Rik|3010005K24Rik|Trek2	potassium channel, subfamily K, member 10	protein-coding	0.045000	0.606965	
mm_90794.1	chr10	7140286	7140486	-	1	NA	NA	NA	71851	NM_172546	215748	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.015000	0.442786	-47(GGTTTTAAATGG,-,0.00)
mm_28513.1	chr3	92584276	92584476	-	1	NA	NA	NA	4648	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.015000	0.601990	
mm_151558.1	chr19	59837701	59837901	+	1	NA	NA	NA	105563	NM_001033172	74998	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	0.020000	0.422886	
mm_22381.1	chr2	181156738	181156938	-	1	NA	NA	NA	177	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.120000	0.696517	
mm_72933.1	chr8	91313443	91313643	+	1	NA	NA	NA	18	NM_011936	26383	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	0.080000	0.621891	
mm_145573.1	chr18	60914528	60914728	+	1	NA	NA	NA	2388	NM_001038499	545260	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	0.005000	0.417910	
mm_81577.1	chr9	110422269	110422469	+	1	NA	NA	NA	2561	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.015000	0.437811	
mm_141977.1	chr17	35160715	35160915	-	1	NA	NA	NA	4062	NM_001199044	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.020000	0.527363	-82(ACGTTTAAAGGG,-,0.00),31(CCTTATAGATAC,+,0.00)
mm_43360.1	chr5	135217678	135217878	+	1	NA	NA	NA	30455	NM_011714	22385	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.015000	0.492537	
mm_32950.1	chr4	119553071	119553271	+	1	NA	NA	NA	13510	NM_172699	230700	Mm.259227	NM_172699	ENSMUSG00000032998	Foxj3	C330039G02Rik|Fhd6	forkhead box J3	protein-coding	0.010000	0.482587	-4(TTTTAAATAGGC,+,0.00)
mm_22762.1	chr3	19992684	19992884	+	1	NA	NA	NA	35730	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.005000	0.432836	-44(GGCTCTTTAAGC,-,0.00)
mm_158736.1	chrX	164042233	164042433	-	1	NA	NA	NA	-14323	NM_181315	56078	Mm.180953	NM_181315	ENSMUSG00000031373	Car5b	7330410H16Rik|CAVB|Ca5b|CarVb|D730005F19Rik	carbonic anhydrase 5b, mitochondrial	protein-coding	0.050000	0.507463	-33(GCTTTAAAACTC,+,0.00)
mm_27249.1	chr3	36613395	36613595	-	1	NA	NA	NA	-106	NM_027810	71492	Mm.286187	NM_027810	ENSMUSG00000037325	Bbs7	8430406N16Rik	Bardet-Biedl syndrome 7 (human)	protein-coding	0.070000	0.651741	
mm_3239.1	chr1	135852116	135852316	+	1	NA	NA	NA	11355	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.015000	0.537313	
mm_12032.1	chr2	58567284	58567484	+	1	NA	NA	NA	50	NM_001289660	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.125000	0.776119	
mm_45745.1	chr5	86632285	86632485	-	1	NA	NA	NA	39	NM_178730	243083	Mm.106867	NM_178730	ENSMUSG00000048764	Tmprss11f	4631408C20|4732406D01Rik	transmembrane protease, serine 11f	protein-coding	0.005000	0.393035	
mm_119679.1	chr14	52795023	52795223	+	1	NA	NA	NA	-299428	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.005000	0.417910	
mm_10152.1	chr2	4300791	4300991	+	1	NA	NA	NA	-100085	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.015000	0.487562	
mm_52717.1	chr6	119515599	119515799	+	1	NA	NA	NA	28648	NM_009525	22419	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0.005000	0.547264	
mm_108318.1	chr12	79663736	79663936	+	1	NA	NA	NA	260897	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.010000	0.422886	
mm_1657.1	chr1	74713090	74713290	+	1	NA	NA	NA	-345	NM_024264	104086	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0.030000	0.567164	
mm_21344.1	chr2	157110518	157110718	-	1	NA	NA	NA	23563	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.015000	0.462687	
mm_56367.1	chr6	93913316	93913516	-	1	NA	NA	NA	274	NM_001286788	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.035000	0.592040	
mm_120440.1	chr14	65837340	65837540	+	1	NA	NA	NA	138	NM_145944	67179	Mm.214576	NM_145944	ENSMUSG00000022035	Ccdc25	2610528H13Rik|NSrp70	coiled-coil domain containing 25	protein-coding	0.100000	0.646766	
mm_99539.1	chr11	103197556	103197756	+	1	NA	NA	NA	10892	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.025000	0.517413	
mm_56596.1	chr6	108659313	108659513	-	1	NA	NA	NA	-1216	NM_011498	20893	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0.120000	0.706468	
mm_132940.1	chr16	49856464	49856664	+	1	NA	NA	NA	910	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.015000	0.417910	
mm_66186.1	chr7	34192044	34192244	-	1	NA	NA	NA	4503	NM_026549	68079	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.005000	0.398010	
mm_7170.1	chr1	92126751	92126951	-	1	NA	NA	NA	53490	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.005000	0.427861	
mm_165370.1	chr2	128114278	128114478	+	1	NA	NA	NA	-11660	NM_207681	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.010000	0.487562	
mm_123916.1	chr14	73362845	73363045	-	1	NA	NA	NA	22326	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.005000	0.343284	
mm_75930.1	chr8	71511670	71511870	-	1	NA	NA	NA	-1	NM_032398	84094	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	0.045000	0.606965	
mm_86438.1	chr10	3973022	3973222	+	1	NA	NA	NA	47	NM_172308	270685	Mm.184752	NM_172308	ENSMUSG00000040675	Mthfd1l	2410004L15Rik|AI647056|Fthfsdc1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like	protein-coding	0.060000	0.636816	
mm_97695.1	chr11	80161247	80161447	+	1	NA	NA	NA	7185	NM_172133	216991	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.010000	0.522388	
mm_75984.1	chr8	72284904	72285104	-	1	NA	NA	NA	-34058	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.015000	0.512438	
mm_161792.1	chr17	47695019	47695219	+	1	NA	NA	NA	-88	NM_144939	107971	Mm.392206	NM_144939	ENSMUSG00000023266	Frs3	4930417B13Rik|AI449674|Frs2beta|Snt2	fibroblast growth factor receptor substrate 3	protein-coding	0.125000	0.746269	
mm_13482.1	chr2	106080931	106081131	+	1	NA	NA	NA	-77482	NR_033993	99349	Mm.25661	NM_026992	ENSMUSG00000027166	Dnajc24	1700030A21Rik|2610027M02Rik|AV066965|AW240712|Dph4|MmDjC7|Zcsl3	DnaJ heat shock protein family (Hsp40) member C24	protein-coding	0.020000	0.457711	
mm_85717.1	chr9	108263663	108263863	-	1	NA	NA	NA	52	NM_010017	13138	Mm.7524	NM_010017	ENSMUSG00000039952	Dag1	D9Wsu13e|DG|Dp427|Dp71	dystroglycan 1	protein-coding	0.180000	0.791045	
mm_77138.1	chr8	111393768	111393968	-	1	NA	NA	NA	-47	NM_178086	338521	Mm.41083	NM_178086	ENSMUSG00000033579	Fa2h	FAAH|Faxdc1|G630055L08Rik	fatty acid 2-hydroxylase	protein-coding	0.110000	0.736318	
mm_24563.1	chr3	93443682	93443882	+	1	NA	NA	NA	1452	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.060000	0.587065	
mm_165107.1	chr19	56535073	56535273	-	1	NA	NA	NA	13049	NM_018831	55947	Mm.2805	NM_018831	ENSMUSG00000025077	Dclre1a	2810043H12Rik|AU022226|Pso2|Smn1a|Snm1|mKIAA0086	DNA cross-link repair 1A	protein-coding	0.030000	0.472637	
mm_32318.1	chr4	103619135	103619335	+	1	NA	NA	NA	236735	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA	0.020000	0.517413	
mm_21473.1	chr2	161108922	161109122	-	1	NA	NA	NA	64	NM_173368	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0.035000	0.537313	
mm_30321.1	chr3	151731647	151731847	-	1	NA	NA	NA	18212	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.005000	0.393035	
mm_54134.1	chr6	21852055	21852255	-	1	NA	NA	NA	360	NM_173007	269831	Mm.21950	NM_173007	ENSMUSG00000029669	Tspan12	9030619E17|AI426782|AI663988|AW111457|Tm4sf12	tetraspanin 12	protein-coding	0.060000	0.497512	
mm_157843.1	chrX	74373185	74373385	-	1	NA	NA	NA	64	NM_001256104	214601	Mm.19931	NM_145406	ENSMUSG00000032806	Slc10a3	DXHXS253E|DXS253Eh|DXSmhG28|P3	solute carrier family 10 (sodium/bile acid cotransporter family), member 3	protein-coding	0.085000	0.671642	
mm_161236.1	chr13	94285858	94286058	-	1	NA	NA	NA	-127	NM_001346609	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.030000	0.537313	
mm_102657.1	chr11	63922175	63922375	-	1	NA	NA	NA	9	NM_018805	54710	Mm.274426	NM_018805	ENSMUSG00000070407	Hs3st3b1	3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B	heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1	protein-coding	0.095000	0.691542	
mm_38549.1	chr4	141601607	141601807	-	1	NA	NA	NA	-1783	NM_001163256	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.015000	0.587065	
mm_28912.1	chr3	98814342	98814542	-	1	NA	NA	NA	1	NM_013821	15497	Mm.14435	NM_013821	ENSMUSG00000027869	Hsd3b6	D19210	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 6	protein-coding	0.010000	0.552239	
mm_139561.1	chr17	56931604	56931804	+	1	NA	NA	NA	3684	NM_022328	64144	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0.000000	0.482587	
mm_121795.1	chr14	20083034	20083234	-	1	NA	NA	NA	38	NM_026209	67509	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0.110000	0.676617	
mm_51405.1	chr6	78373259	78373459	+	1	NA	NA	NA	2474	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.005000	0.363184	
mm_111078.1	chr12	80168090	80168290	-	1	NA	NA	NA	-35346	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.040000	0.537313	
mm_129722.1	chr15	81960707	81960907	-	1	NA	NA	NA	123	NM_001282040	29858	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	0.125000	0.736318	
mm_81632.1	chr9	110857873	110858073	+	1	NA	NA	NA	6	NM_146227	235631	Mm.102265	NM_146227	ENSMUSG00000048752	Prss50	79H19C|Tsp50	protease, serine 50	protein-coding	0.090000	0.726368	
mm_92356.1	chr10	75921329	75921529	-	1	NA	NA	NA	185	NM_011418	20587	Mm.279751	NM_011418	ENSMUSG00000000902	Smarcb1	AU020204|Baf47|Ini1|SNF5/INI1|Snf5	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	protein-coding	0.110000	0.671642	
mm_108705.1	chr12	87021227	87021427	+	1	NA	NA	NA	-5237	NM_172583	217733	Mm.110032	NM_172583	ENSMUSG00000034145	Tmem63c	4932420N09|9330187M14Rik	transmembrane protein 63c	protein-coding	0.010000	0.507463	
mm_117845.1	chr13	98694683	98694883	-	1	NA	NA	NA	48	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.055000	0.636816	
mm_170780.1	chr2	171083559	171083759	+	1	NA	NA	NA	351852	NM_001163686	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0.025000	0.452736	
mm_138287.1	chr17	34612646	34612846	+	1	NA	NA	NA	3225	NM_152922	81701	Mm.231343	NM_152922	ENSMUSG00000015467	Egfl8	Ng3	EGF-like domain 8	protein-coding	0.025000	0.557214	
mm_43158.1	chr5	125928672	125928872	+	1	NA	NA	NA	396354	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0.005000	0.477612	
mm_97860.1	chr11	83116730	83116930	+	1	NA	NA	NA	-15	NM_011407	20555	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0.020000	0.502488	
mm_27468.1	chr3	52754951	52755151	-	1	NA	NA	NA	15327	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	0.020000	0.442786	
mm_75288.1	chr8	41041740	41041940	-	1	NA	NA	NA	91	NM_001005865	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.030000	0.557214	
mm_46043.1	chr5	92015232	92015432	-	1	NA	NA	NA	27364	NM_001276315	53886	Mm.44963	NM_016912	ENSMUSG00000029403	Cdkl2	5330436L21Rik|AI505225|KKIAMRE|Kkm	cyclin-dependent kinase-like 2 (CDC2-related kinase)	protein-coding	0.005000	0.368159	7(TTCTTTTTAAGC,-,0.00)
mm_125561.1	chr15	58889190	58889390	+	1	NA	NA	NA	61	NM_175226	75841	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0.130000	0.810945	
mm_16350.1	chr2	174346474	174346674	+	1	NA	NA	NA	16485	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.010000	0.383085	
mm_168630.1	chr1	182182667	182182867	+	1	NA	NA	NA	-24669	NM_001166728	625823	Mm.479992	NM_001166728	ENSMUSG00000091013	Vmn1r1	EG625823|Gm6628	vomeronasal 1 receptor 1	protein-coding	0.020000	0.522388	
mm_65613.1	chr7	27531625	27531825	-	1	NA	NA	NA	8464	NM_001033315	233020	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.035000	0.567164	
mm_121360.1	chr14	117240599	117240799	+	1	NA	NA	NA	315402	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.005000	0.432836	
mm_141488.1	chr17	31277191	31277391	-	1	NA	NA	NA	65	NM_025290	22092	Mm.12743	NM_025290	ENSMUSG00000024033	Rsph1	MCA|Tsga2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding	0.065000	0.597015	
mm_64422.1	chr7	142576913	142577113	+	1	NA	NA	NA	134	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.025000	0.597015	
mm_42836.1	chr5	122102873	122103073	+	1	NA	NA	NA	1993	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.015000	0.447761	-6(TTTTTTAAACAC,+,0.00)
mm_70925.1	chr8	25812880	25813080	+	1	NA	NA	NA	4506	NM_011485	20845	Mm.293314	NM_011485	ENSMUSG00000031574	Star	AV363654|D8Ertd419e|stARD1	steroidogenic acute regulatory protein	protein-coding	0.005000	0.467662	
mm_74533.1	chr8	9702491	9702691	-	1	NA	NA	NA	68432	NM_173446	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding	0.010000	0.358209	
mm_117242.1	chr13	64362902	64363102	-	1	NA	NA	NA	7518	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.005000	0.318408	
mm_118371.1	chr13	116888897	116889097	-	1	NA	NA	NA	136519	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.010000	0.437811	
mm_21929.1	chr2	167043409	167043609	-	1	NA	NA	NA	-14	NM_001291162	98999	Mm.297074	NM_001033196	ENSMUSG00000039501	Znfx1	AI481105|Astx3	zinc finger, NFX1-type containing 1	protein-coding	0.020000	0.527363	81(GCCTCTTAAGGA,-,0.00),82(CCTCTTAAGGAC,+,0.00)
mm_25253.1	chr3	104655768	104655968	+	1	NA	NA	NA	17204	NM_009196	20501	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.005000	0.417910	
mm_30006.1	chr3	135613579	135613779	-	1	NA	NA	NA	77868	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.025000	0.442786	
mm_34575.1	chr4	150087427	150087627	+	1	NA	NA	NA	24	NM_177366	269604	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0.060000	0.656716	
mm_57144.1	chr6	122635276	122635476	-	1	NA	NA	NA	8952	NM_139218	73708	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.010000	0.432836	14(GGATATTTAAGC,-,0.00)
mm_91412.1	chr10	31608522	31608722	-	1	NA	NA	NA	1103	NM_001146349	268291	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.090000	0.711443	69(GCCTATTAGGGG,-,0.00)
mm_66843.1	chr7	48886978	48887178	-	1	NA	NA	NA	-6037	NM_001013368	108961	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.025000	0.517413	
mm_144261.1	chr18	11052423	11052623	+	1	NA	NA	NA	13	NM_010258	14465	Mm.329287	NM_010258	ENSMUSG00000005836	Gata6	AA410133|GATA-6	GATA binding protein 6	protein-coding	0.045000	0.597015	
mm_54106.1	chr6	16898327	16898527	-	1	NA	NA	NA	14	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.010000	0.398010	
mm_37702.1	chr4	129375919	129376119	-	1	NA	NA	NA	2009	NM_028603	73680	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	0.015000	0.542289	
mm_42501.1	chr5	115490141	115490341	+	1	NA	NA	NA	-5757	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.095000	0.582090	
mm_71209.1	chr8	40890512	40890712	+	1	NA	NA	NA	28245	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.010000	0.407960	
mm_32375.1	chr4	106315921	106316121	+	1	NA	NA	NA	-192	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.110000	0.731343	
mm_149197.1	chr19	9954991	9955191	+	1	NA	NA	NA	-25509	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.005000	0.557214	
mm_128013.1	chr15	15175359	15175559	-	1	NA	NA	NA	-1602642	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.000000	0.477612	
mm_137493.1	chr17	26951612	26951812	+	1	NA	NA	NA	-3593	NR_037244	100526534		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0.020000	0.621891	
mm_94188.1	chr10	128960739	128960939	-	1	NA	NA	NA	149	NM_027853	71664	Mm.337232	NM_027853	ENSMUSG00000025347	Mettl7b	0610006F02Rik|AI266817	methyltransferase like 7B	protein-coding	0.005000	0.492537	
mm_101338.1	chr11	23519141	23519341	-	1	NA	NA	NA	-46	NM_026105	67358	Mm.87328	NM_026105	ENSMUSG00000020286	1700093K21Rik	-	RIKEN cDNA 1700093K21 gene	protein-coding	0.005000	0.552239	
mm_13733.1	chr2	118111404	118111604	+	1	NA	NA	NA	-302	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA	0.020000	0.487562	-54(TCCTTTAAGGGG,+,0.00),-53(CCTTTAAGGGGT,+,0.00),56(CTCCCTAAAGGG,-,0.00)
mm_130484.1	chr15	98742553	98742753	-	1	NA	NA	NA	-14455	NM_024169	66120	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.025000	0.552239	
mm_157356.1	chrX	37085046	37085246	-	1	NA	NA	NA	76	NM_026055	67248	Mm.30478	NM_026055	ENSMUSG00000079641	Rpl39	2810465O16Rik	ribosomal protein L39	protein-coding	0.090000	0.597015	
mm_144751.1	chr18	35608957	35609157	+	1	NA	NA	NA	10390	NM_026420	67869	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	0.005000	0.368159	
mm_50719.1	chr6	52229806	52230006	+	1	NA	NA	NA	259	NR_029912	723820		NR_029912	ENSMUSG00000065443	Mir196b	Mirn196b|mir-196b	microRNA 196b	ncRNA	0.075000	0.661692	
mm_25090.1	chr3	100920679	100920879	+	1	NA	NA	NA	-1714	NM_001165952	229644	Mm.189351	NM_194343	ENSMUSG00000033233	Trim45	4921530N01Rik	tripartite motif-containing 45	protein-coding	0.025000	0.497512	
mm_100202.1	chr11	116843444	116843644	+	1	NA	NA	NA	29	NM_028865	74319	Mm.429312	NM_028865	ENSMUSG00000090266	Mettl23	1110005A03Rik|1500035B17Rik|4933424L15Rik	methyltransferase like 23	protein-coding	0.115000	0.701493	
mm_112322.1	chr12	115294401	115294601	-	1	NA	NA	NA	401293	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.005000	0.487562	
mm_46388.1	chr5	104021688	104021888	-	1	NA	NA	NA	8	NM_053262	114664	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0.055000	0.527363	-58(TCTTTAATAGGG,+,0.00)
mm_121614.1	chr14	8258916	8259116	-	1	NA	NA	NA	3	NM_053115	93732	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0.010000	0.532338	
mm_102646.1	chr11	62789362	62789562	-	1	NA	NA	NA	-45	NM_138949	192651	Mm.168530	NM_138949	ENSMUSG00000047342	Zfp286	BC027023	zinc finger protein 286	protein-coding	0.055000	0.587065	
mm_142514.1	chr17	46247885	46248085	-	1	NA	NA	NA	60	NM_009085	20016	Mm.3458	NM_009085	ENSMUSG00000067148	Polr1c	40kDa|AA409007|AA959927|AL024089|Polr1e|RPA40|Rpo1-1	polymerase (RNA) I polypeptide C	protein-coding	0.110000	0.621891	
mm_51896.1	chr6	90619128	90619328	+	1	NA	NA	NA	-18	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.025000	0.592040	
mm_84642.1	chr9	71215231	71215431	-	1	NA	NA	NA	55	NR_110518	100041660	Mm.487231	NR_110518		Gm3458	-	predicted gene 3458	ncRNA	0.060000	0.656716	
mm_8179.1	chr1	138080101	138080301	-	1	NA	NA	NA	94925	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.467662	
mm_134885.1	chr16	29378519	29378719	-	1	NA	NA	NA	113	NM_001284375	268878	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	0.020000	0.497512	74(TGCTCTTAATGG,-,0.00)
mm_149418.1	chr19	11435109	11435309	+	1	NA	NA	NA	-8349	NM_021718	60361	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	0.005000	0.343284	
mm_115038.1	chr13	99425287	99425487	+	1	NA	NA	NA	-12561	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.010000	0.517413	
mm_129789.1	chr15	82832418	82832618	-	1	NA	NA	NA	-38273	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.005000	0.407960	
mm_116956.1	chr13	56135985	56136185	-	1	NA	NA	NA	-535	NM_001159513	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.015000	0.462687	
mm_68142.1	chr7	102240101	102240301	-	1	NA	NA	NA	9917	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.035000	0.542289	
mm_83855.1	chr9	54642586	54642786	-	1	NA	NA	NA	19199	NM_053178	94180	Mm.20592	NM_053178	ENSMUSG00000032281	Acsbg1	BG1|Bgm|E230019G03Rik|GR-LACS|Lpd|R75185	acyl-CoA synthetase bubblegum family member 1	protein-coding	0.020000	0.532338	52(CTCCAGAAAAGG,-,0.00)
mm_143088.1	chr17	57080289	57080489	-	1	NA	NA	NA	-1879	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.005000	0.487562	-26(TCCTTTATGCCC,+,0.00)
mm_36692.1	chr4	96635729	96635929	-	1	NA	NA	NA	28290	NM_010007	13109	Mm.12838	NM_010007	ENSMUSG00000052520	Cyp2j5	-	cytochrome P450, family 2, subfamily j, polypeptide 5	protein-coding	0.005000	0.422886	
mm_121005.1	chr14	79516334	79516534	+	1	NA	NA	NA	760	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.020000	0.487562	
mm_48219.1	chr5	137613672	137613872	-	1	NA	NA	NA	-2368	NM_008788	18542	Mm.262345	NM_008788	ENSMUSG00000029718	Pcolce	Astt-2|Astt2|P14|PCPE-1	procollagen C-endopeptidase enhancer protein	protein-coding	0.045000	0.621891	
mm_156455.1	chrX	142783108	142783308	+	1	NA	NA	NA	44208	NR_030523	723976		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	0.005000	0.313433	
mm_88218.1	chr10	70285409	70285609	+	1	NA	NA	NA	40233	NM_025807	66859	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.005000	0.388060	
mm_163020.1	chr11	46750387	46750587	+	1	NA	NA	NA	-24	NM_001166631	171283	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	0.005000	0.383085	49(GGGCTTAAAAGT,-,0.00)
mm_141668.1	chr17	33890452	33890652	-	1	NA	NA	NA	81	NM_001195298	100502766	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	0.095000	0.641791	
mm_44261.1	chr5	5514784	5514984	-	1	NA	NA	NA	-35	NM_001193659	64945	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding	0.090000	0.676617	
mm_129936.1	chr15	84855081	84855281	-	1	NA	NA	NA	948	NM_001081166	271305	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.105000	0.601990	
mm_103802.1	chr11	82910693	82910893	-	1	NA	NA	NA	-460	NM_178680	217012	Mm.295205	NM_178680	ENSMUSG00000018845	Unc45b	AA445617|Cmya4|D230041A13Rik|Unc45	unc-45 myosin chaperone B	protein-coding	0.015000	0.567164	
mm_89082.1	chr10	83543918	83544118	+	1	NA	NA	NA	77	NM_001033375	319277	Mm.491194	NM_001033375	ENSMUSG00000034560	Washc4	A230046K03Rik|AA589518|Kiaa1033|mKIAA1033	WASH complex subunit 4	protein-coding	0.130000	0.716418	
mm_535.1	chr1	37997881	37998081	+	1	NA	NA	NA	-29	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.130000	0.696517	
mm_172507.1	chr7	68303994	68304194	+	1	NA	NA	NA	-27500	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.005000	0.552239	
mm_164097.1	chr15	12598958	12599158	-	1	NA	NA	NA	-6502	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.020000	0.452736	
mm_36884.1	chr4	107253270	107253470	-	1	NA	NA	NA	163	NM_029985	77809	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	0.065000	0.711443	
mm_97176.1	chr11	75532076	75532276	+	1	NA	NA	NA	64	NM_001199283	215113	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.055000	0.626866	
mm_31068.1	chr4	41348946	41349146	+	1	NA	NA	NA	50	NM_023305	67123	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.075000	0.646766	
mm_158112.1	chrX	102189204	102189404	-	1	NA	NA	NA	87	NM_009094	20102	Mm.66	NM_009094	ENSMUSG00000031320	Rps4x	Rps4|Rps4-1	ribosomal protein S4, X-linked	protein-coding	0.095000	0.636816	
mm_30815.1	chr4	21749605	21749805	+	1	NA	NA	NA	17506	NM_029840	77032	Mm.87238	NM_029840	ENSMUSG00000028251	Tstd3	2610029I01Rik	thiosulfate sulfurtransferase (rhodanese)-like domain containing 3	protein-coding	0.010000	0.323383	
mm_67930.1	chr7	99922257	99922457	-	1	NA	NA	NA	58101	NM_175388	108937	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.000000	0.323383	
mm_155850.1	chrX	101274027	101274227	+	1	NA	NA	NA	36	NM_021521	59024	Mm.20873	NM_021521	ENSMUSG00000079487	Med12	230kDa|Mopa|OPA-1|Tnrc11|Trap230	mediator complex subunit 12	protein-coding	0.100000	0.691542	
mm_55844.1	chr6	83317496	83317696	-	1	NA	NA	NA	8	NM_008638	17768	Mm.443	NM_008638	ENSMUSG00000005667	Mthfd2	AW558851|NMDMC	methylenetetrahydrofolate dehydrogenase (NAD+ dependent), methenyltetrahydrofolate cyclohydrolase	protein-coding	0.110000	0.666667	
mm_38876.1	chr4	149685599	149685799	-	1	NA	NA	NA	-9610	NM_001164051	18707	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol 3-kinase catalytic delta polypeptide	protein-coding	0.020000	0.472637	
mm_75759.1	chr8	69917405	69917605	-	1	NA	NA	NA	-14947	NM_023312	67184	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.040000	0.577114	
mm_70547.1	chr8	13055860	13056060	+	1	NA	NA	NA	-4948	NM_025834	66901	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.020000	0.542289	
mm_169054.1	chr13	22422873	22423073	+	1	NA	NA	NA	-18299	NM_134211	171245	Mm.377201	NM_134211		Vmn1r-ps103	V1rh1	vomeronasal 1 receptor, pseudogene 103	protein-coding	0.040000	0.452736	
mm_119934.1	chr14	54970938	54971138	+	1	NA	NA	NA	2251	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.025000	0.532338	
mm_94270.1	chr11	3648687	3648887	+	1	NA	NA	NA	27	NR_002321	544752	Mm.390314	NR_002321	ENSMUSG00000056579	Tug1	AI316828	taurine upregulated gene 1	ncRNA	0.165000	0.711443	
mm_151407.1	chr19	56548463	56548663	+	1	NA	NA	NA	302	NM_025811	66866	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.100000	0.696517	
mm_48708.1	chr5	147221709	147221909	-	1	NA	NA	NA	33113	NM_008178	14842	Mm.4797	NM_008178	ENSMUSG00000053129	Gsx1	Gsh-1|Gsh1	GS homeobox 1	protein-coding	0.050000	0.611940	-35(TTCCTTAAAGGC,-,0.00)
mm_42928.1	chr5	122850039	122850239	+	1	NA	NA	NA	-49	NM_030564	80751	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	0.105000	0.651741	
mm_78687.1	chr9	40801175	40801375	+	1	NA	NA	NA	2	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.065000	0.597015	
mm_65080.1	chr7	19166027	19166227	-	1	NA	NA	NA	0	NM_001080815	381853	Mm.333633	NM_001080815	ENSMUSG00000030406	Gipr	GIP-R|Gm1081|Gm160	gastric inhibitory polypeptide receptor	protein-coding	0.030000	0.666667	
mm_123181.1	chr14	57718877	57719077	-	1	NA	NA	NA	15441	NM_153382	50523	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.000000	0.323383	
mm_62282.1	chr7	99818487	99818687	+	1	NA	NA	NA	9830	NM_016720	50877	Mm.103703	NM_016720	ENSMUSG00000035239	Neu3	-	neuraminidase 3	protein-coding	0.015000	0.547264	
mm_105773.1	chr11	109721547	109721747	-	1	NA	NA	NA	609	NM_153782	208659	Mm.208662	NM_153782	ENSMUSG00000020614	Fam20a	AI606893	family with sequence similarity 20, member A	protein-coding	0.110000	0.741294	
mm_162902.1	chr10	115763936	115764136	+	1	NA	NA	NA	-53248	NM_001168680	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	0.015000	0.477612	
mm_90971.1	chr10	13446051	13446251	-	1	NA	NA	NA	28245	NM_001195065	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.005000	0.507463	
mm_63590.1	chr7	128134747	128134947	+	1	NA	NA	NA	5279	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.010000	0.502488	
mm_128040.1	chr15	25364792	25364992	-	1	NA	NA	NA	48872	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.040000	0.577114	
mm_13748.1	chr2	118120796	118120996	+	1	NA	NA	NA	9020	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.020000	0.527363	
mm_21163.1	chr2	154603606	154603806	-	1	NA	NA	NA	-33	NM_021534	59038	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	0.040000	0.606965	
mm_119338.1	chr14	40972546	40972746	+	1	NA	NA	NA	-5750	NM_145928	52588	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.020000	0.502488	
mm_120187.1	chr14	61492636	61492836	+	1	NA	NA	NA	48	NR_045714	75349	Mm.233613	NR_045714		4930556J02Rik	-	RIKEN cDNA 4930556J02 gene	ncRNA	0.010000	0.487562	
mm_94692.1	chr11	19983041	19983241	+	1	NA	NA	NA	58699	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.010000	0.452736	
mm_154654.1	chrX	7841831	7842031	+	1	NA	NA	NA	100	NM_138604	54644	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	0.090000	0.631841	
mm_148368.1	chr18	88894109	88894309	-	1	NA	NA	NA	-2	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.140000	0.791045	
mm_45603.1	chr5	75044319	75044519	-	1	NA	NA	NA	222	NM_028850	74277	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	0.130000	0.756219	
mm_158117.1	chrX	102250850	102251050	-	1	NA	NA	NA	-174	NM_001276474	12705	Mm.2390	NM_007709	ENSMUSG00000051159	Cited1	AI316840|AU019144|Msg1	Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1	protein-coding	0.095000	0.631841	
mm_123177.1	chr14	57662120	57662320	-	1	NA	NA	NA	2736	NM_020506	57258	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	0.000000	0.288557	
mm_42099.1	chr5	110344647	110344847	+	1	NA	NA	NA	17	NM_001310709	381667	Mm.332572	NM_001033459	ENSMUSG00000072754	Lrcol1	Clpsl3|Gm1679	leucine rich colipase-like 1	protein-coding	0.015000	0.552239	
mm_81093.1	chr9	106370739	106370939	+	1	NA	NA	NA	2207	NM_153459	235584	Mm.275584	NM_153459	ENSMUSG00000053716	Dusp7	AU015694|Mkpx|Pyst2	dual specificity phosphatase 7	protein-coding	0.060000	0.661692	
mm_163623.1	chr13	55449892	55450092	+	1	NA	NA	NA	-3114	NR_105908	102466770		NR_105908	ENSMUSG00000099058	Mir6943	Gm27791|mmu-mir-6943	microRNA 6943	ncRNA	0.010000	0.567164	
mm_127110.1	chr15	97869671	97869871	+	1	NA	NA	NA	-25269	NM_001204278	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.040000	0.562189	
mm_163861.1	chr14	19418644	19418844	-	1	NA	NA	NA	183843	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.035000	0.358209	
mm_144041.1	chr17	90313193	90313393	-	1	NA	NA	NA	142587	NM_001346958	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.010000	0.378109	
mm_156742.1	chrX	159942998	159943198	+	1	NA	NA	NA	405	NM_001290664	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.000000	0.482587	
mm_63887.1	chr7	137437562	137437762	+	1	NA	NA	NA	-12	NR_033611	620016	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	OTTMUSG00000007920	glutaredoxin 3 pseudogene	pseudo	0.110000	0.716418	
mm_153064.1	chr19	32196333	32196533	-	1	NA	NA	NA	14580	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.010000	0.442786	
mm_45693.1	chr5	82123242	82123442	-	1	NA	NA	NA	1371	NR_138557	67327	Mm.87058	NR_138557		1700031L13Rik	-	RIKEN cDNA 1700031L13 gene	ncRNA	0.005000	0.398010	
mm_106573.1	chr11	120673103	120673303	-	1	NA	NA	NA	230	NM_026877	68938	Mm.294020	NM_026877	ENSMUSG00000025142	Aspscr1	1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG	alveolar soft part sarcoma chromosome region, candidate 1 (human)	protein-coding	0.135000	0.786070	
mm_50962.1	chr6	59208823	59209023	+	1	NA	NA	NA	53	NM_001081145	68140	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.160000	0.751244	
mm_128600.1	chr15	58191326	58191526	-	1	NA	NA	NA	23466	NM_026346	67731	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.015000	0.452736	
mm_166967.1	chr7	44481570	44481770	+	1	NA	NA	NA	-2847	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.497512	
mm_8798.1	chr1	161793150	161793350	-	1	NA	NA	NA	-4755	NM_010177	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.005000	0.447761	
mm_147549.1	chr18	54901021	54901221	-	1	NA	NA	NA	89059	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.025000	0.422886	
mm_41138.1	chr5	87825665	87825865	+	1	NA	NA	NA	68	NM_001163551	73779	Mm.263642	NM_028648	ENSMUSG00000002240	Prr27	4930432K09Rik	proline rich 27	protein-coding	0.010000	0.398010	
mm_162092.1	chrX	37514324	37514524	+	1	NA	NA	NA	-111	NM_001039695	664610	Mm.381921	NM_001039695	ENSMUSG00000079633	Rhox4d	Rhox4.4|Rhox4c	reproductive homeobox 4D	protein-coding	0.080000	0.547264	
mm_158065.1	chrX	101212802	101213002	-	1	NA	NA	NA	9661	NM_001110311	55988	Mm.206949	NM_018875	ENSMUSG00000046032	Snx12	2610001F05Rik|AW045757|SDP8	sorting nexin 12	protein-coding	0.005000	0.472637	
mm_76885.1	chr8	105636066	105636266	-	1	NA	NA	NA	-372	NM_181322	13018	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0.080000	0.671642	
mm_107444.1	chr12	36381471	36381671	+	1	NA	NA	NA	121	NM_178629	75847	Mm.261764	NM_178629	ENSMUSG00000043153	Ispd	4930579E17Rik|AV040780	isoprenoid synthase domain containing	protein-coding	0.055000	0.626866	
mm_103554.1	chr11	77718798	77718998	-	1	NA	NA	NA	6395	NM_001313933	12957	Mm.22830	NM_009965	ENSMUSG00000000724	Cryba1	BA3/A1|Cryb	crystallin, beta A1	protein-coding	0.015000	0.437811	
mm_6705.1	chr1	82281191	82281391	-	1	NA	NA	NA	10148	NM_010570	16367	Mm.4952	NM_010570	ENSMUSG00000055980	Irs1	G972R|IRS-1	insulin receptor substrate 1	protein-coding	0.000000	0.338308	
mm_25829.1	chr3	128843680	128843880	+	1	NA	NA	NA	-356098	NM_001286942	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.000000	0.308458	
mm_39474.1	chr5	20085494	20085694	+	1	NA	NA	NA	178076	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.005000	0.368159	
mm_69678.1	chr7	139985329	139985529	-	1	NA	NA	NA	1445	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.005000	0.577114	
mm_141895.1	chr17	34862367	34862567	-	1	NA	NA	NA	47	NM_001142706	14962	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0.000000	0.527363	
mm_50368.1	chr6	48676035	48676235	+	1	NA	NA	NA	0	NM_174960	317758	Mm.116971	NM_174960	ENSMUSG00000051124	Gimap9	A630002K24|BB145400	GTPase, IMAP family member 9	protein-coding	0.020000	0.547264	
mm_53870.1	chr6	149361405	149361605	+	1	NA	NA	NA	-47479	NM_001112796	12121	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	bicaudal D homolog 1 (Drosophila)	protein-coding	0.055000	0.557214	
mm_49859.1	chr6	38534753	38534953	+	1	NA	NA	NA	-8	NM_025363	66117	Mm.158971	NM_025363	ENSMUSG00000019689	Fmc1	1110001J03Rik	formation of mitochondrial complex V assembly factor 1	protein-coding	0.090000	0.701493	
mm_147759.1	chr18	61289614	61289814	-	1	NA	NA	NA	69215	NM_146086	225600	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	0.005000	0.417910	
mm_134938.1	chr16	31167893	31168093	-	1	NA	NA	NA	33245	NM_030138	78618	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.015000	0.462687	
mm_119397.1	chr14	41151377	41151577	+	1	NA	NA	NA	21	NM_010775	17194	Mm.281805	NM_010775	ENSMUSG00000037780	Mbl1	MBL-A|MBP-A|S-MBP	mannose-binding lectin (protein A) 1	protein-coding	0.010000	0.487562	
mm_112223.1	chr12	113429731	113429931	-	1	NA	NA	NA	-59734	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.020000	0.517413	
mm_132721.1	chr16	43573673	43573873	+	1	NA	NA	NA	-66882	NR_030576	100124467		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.020000	0.442786	
mm_153801.1	chr19	46039546	46039746	-	1	NA	NA	NA	-25	NM_010697	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.090000	0.721393	
mm_14030.1	chr2	122152743	122152943	+	1	NA	NA	NA	5156	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.000000	0.273632	
mm_170555.1	chr19	41525222	41525422	+	1	NA	NA	NA	70	NM_001326287	627352	Mm.395111	NM_001326287		Morf4l1b	EG627352|Gm6747	mortality factor 4 like 1B	protein-coding	0.045000	0.547264	
mm_71849.1	chr8	68905875	68906075	+	1	NA	NA	NA	25420	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.328358	
mm_63866.1	chr7	135684250	135684450	+	1	NA	NA	NA	32029	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.522388	
mm_92504.1	chr10	78352392	78352592	-	1	NA	NA	NA	-792	NM_053014	28169	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.155000	0.776119	
mm_9788.1	chr1	181257051	181257251	-	1	NA	NA	NA	-45173	NM_145514	226757	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.025000	0.557214	
mm_107739.1	chr12	58002656	58002856	+	1	NA	NA	NA	-209048	NM_009216	20605	Mm.278336	NM_009216	ENSMUSG00000035431	Sstr1	SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1	somatostatin receptor 1	protein-coding	0.010000	0.363184	
mm_159131.1	chr2	74762912	74763112	+	1	NA	NA	NA	32	NM_010467	15429	Mm.4932	NM_010467	ENSMUSG00000042448	Hoxd1	Hox-4.9	homeobox D1	protein-coding	0.120000	0.701493	
mm_44351.1	chr5	17788213	17788413	-	1	NA	NA	NA	47583	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.298507	
mm_163912.1	chr14	33510831	33511031	-	1	NA	NA	NA	-63773	NM_016700	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.005000	0.497512	
mm_39350.1	chr5	8957081	8957281	+	1	NA	NA	NA	39965	NM_023733	74114	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.000000	0.283582	
mm_142563.1	chr17	46645916	46646116	-	1	NA	NA	NA	-205	NM_001316742	27398	Mm.391007	NM_025302	ENSMUSG00000002767	Mrpl2	CGI-22|L2mt|MRP-L14|MRP-L2|Rpml14	mitochondrial ribosomal protein L2	protein-coding	0.060000	0.606965	
mm_173343.1	chrY	90812862	90813062	+	1	NA	NA	NA	26444	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.000000	0.502488	
mm_125993.1	chr15	76354400	76354600	+	1	NA	NA	NA	3206	NM_026859	68877	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	0.030000	0.547264	
mm_118888.1	chr14	26590045	26590245	+	1	NA	NA	NA	10595	NM_145969	211922	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	0.000000	0.358209	
mm_44372.1	chr5	17814117	17814317	-	1	NA	NA	NA	21679	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.348259	
mm_1630.1	chr1	74432259	74432459	+	1	NA	NA	NA	22975	NM_009509	22349	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.010000	0.552239	
mm_38732.1	chr4	145243953	145244153	-	1	NA	NA	NA	2817	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.010000	0.432836	
mm_51564.1	chr6	83575795	83575995	+	1	NA	NA	NA	-3391	NM_024239	70527	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0.005000	0.522388	
mm_40441.1	chr5	53591138	53591338	+	1	NA	NA	NA	752	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.060000	0.601990	
mm_78217.1	chr9	21537129	21537329	+	1	NA	NA	NA	-9665	NM_021531	59035	Mm.178115	NM_021531	ENSMUSG00000032185	Carm1	Prmt4	coactivator-associated arginine methyltransferase 1	protein-coding	0.015000	0.562189	
mm_66092.1	chr7	30973347	30973547	-	1	NA	NA	NA	22	NM_001164185	54135	Mm.4067	NM_017405	ENSMUSG00000001247	Lsr	ILDR3|Lisch7	lipolysis stimulated lipoprotein receptor	protein-coding	0.080000	0.711443	
mm_75220.1	chr8	39605852	39606052	-	1	NA	NA	NA	36726	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.393035	6(CCTTTTAAGATC,+,0.00),49(CTCCTTAAAAGA,-,0.00),50(TCCTTAAAAGAC,+,0.00),51(CCTTAAAAGACC,+,0.00)
mm_30564.1	chr4	3790168	3790368	+	1	NA	NA	NA	45387	NM_026147	67427	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.010000	0.422886	82(GCTTTAAAACAC,+,0.00)
mm_119231.1	chr14	33317046	33317246	+	1	NA	NA	NA	93878	NM_001310452	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.005000	0.378109	
mm_150737.1	chr19	43752992	43753192	+	1	NA	NA	NA	69	NM_025530	66388	Mm.20257	NM_025530	ENSMUSG00000025193	Cutc	2310039I18Rik|AI326282|CGI-32	cutC copper transporter	protein-coding	0.150000	0.716418	
mm_75197.1	chr8	39006156	39006356	-	1	NA	NA	NA	389	NM_030254	80286	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	0.105000	0.716418	
mm_119462.1	chr14	47087428	47087628	+	1	NA	NA	NA	18551	NM_001310544	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.010000	0.462687	85(GCTTTTAGATAC,+,0.00)
mm_61041.1	chr7	49759421	49759621	+	1	NA	NA	NA	9	NM_001146052	53415	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0.020000	0.572139	
mm_75761.1	chr8	69936404	69936604	-	1	NA	NA	NA	-33946	NM_023312	67184	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.010000	0.507463	
mm_161347.1	chr14	52495569	52495769	-	1	NA	NA	NA	26	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.010000	0.452736	
mm_7180.1	chr1	92641859	92642059	-	1	NA	NA	NA	-11	NR_028108	66915	Mm.30179	NM_001163425	ENSMUSG00000073616	Myeov2	1110002M09Rik|Cops9	myeloma overexpressed 2	protein-coding	0.105000	0.671642	
mm_170315.1	chr18	36920212	36920412	+	1	NA	NA	NA	7	NR_076393	627427		NR_076393	ENSMUSG00000063514	Gm6756	EG627427	3-phosphoglycerate dehydrogenase pseudogene	pseudo	0.010000	0.417910	
mm_22215.1	chr2	174295322	174295522	-	1	NA	NA	NA	14	NR_002846	56802	Mm.125770	NR_002846	ENSMUSG00000086537	Nespas	Gnas-as|Nespos	neuroendocrine secretory protein antisense	ncRNA	0.080000	0.646766	
mm_131153.1	chr16	6840330	6840530	+	1	NA	NA	NA	-229405	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.010000	0.517413	
mm_7240.1	chr1	93621898	93622098	-	1	NA	NA	NA	13729	NM_021537	59041	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.010000	0.338308	40(GTTTTAATAGAG,+,0.00)
mm_9324.1	chr1	171841099	171841299	-	1	NA	NA	NA	1502	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.000000	0.328358	
mm_159701.1	chr5	27261796	27261996	+	1	NA	NA	NA	-39	NM_001136060	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.070000	0.671642	
mm_128835.1	chr15	68340382	68340582	-	1	NA	NA	NA	807	NR_029718	387228		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0.005000	0.263682	
mm_137005.1	chr17	17624647	17624847	+	1	NA	NA	NA	-258	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.090000	0.686567	
mm_138877.1	chr17	43359925	43360125	+	1	NA	NA	NA	-29441	NM_001081178	224792	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	0.010000	0.477612	
mm_713.1	chr1	42261846	42262046	+	1	NA	NA	NA	432879	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.035000	0.502488	
mm_24805.1	chr3	95556121	95556321	+	1	NA	NA	NA	-3456	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.010000	0.343284	
mm_29514.1	chr3	116423862	116424062	-	1	NA	NA	NA	70	NM_001080818	229776	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.070000	0.651741	
mm_959.1	chr1	57901860	57902060	+	1	NA	NA	NA	56389	NM_001164566	67198	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.015000	0.482587	
mm_7397.1	chr1	118311092	118311292	-	1	NA	NA	NA	-60	NM_011650	22099	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	0.155000	0.726368	
mm_140101.1	chr17	78491451	78491651	+	1	NA	NA	NA	-16512	NM_001197028	74199	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik	vitrin	protein-coding	0.050000	0.487562	
mm_21742.1	chr2	164779631	164779831	-	1	NA	NA	NA	3	NM_009394	21925	Mm.1716	NM_009394	ENSMUSG00000017300	Tnnc2	Tncs	troponin C2, fast	protein-coding	0.015000	0.577114	
mm_68786.1	chr7	123300419	123300619	-	1	NA	NA	NA	69396	NM_001122643	70497	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.015000	0.477612	
mm_98026.1	chr11	85177938	85178138	+	1	NA	NA	NA	6942	NM_028589	73634	Mm.48850	NM_028589	ENSMUSG00000018479	1700125H20Rik	-	RIKEN cDNA 1700125H20 gene	protein-coding	0.010000	0.552239	
mm_35868.1	chr4	49506451	49506651	-	1	NA	NA	NA	7	NM_007519	12012	Mm.2859	NM_007519	ENSMUSG00000039653	Baat	AI118337|AI158864|BAT	bile acid-Coenzyme A: amino acid N-acyltransferase	protein-coding	0.010000	0.393035	
mm_62292.1	chr7	99915691	99915891	+	1	NA	NA	NA	56573	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.010000	0.517413	
mm_86632.1	chr10	14017858	14018058	+	1	NA	NA	NA	51579	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.025000	0.467662	
mm_117064.1	chr13	58762183	58762383	-	1	NA	NA	NA	28	NR_045469	67585	Mm.84751	NR_045469		4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	0.020000	0.467662	89(CAGCATTTAAGG,-,0.00)
mm_22281.1	chr2	180042285	180042485	-	1	NA	NA	NA	79	NM_001289476	26444	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	0.130000	0.696517	
mm_55370.1	chr6	57824548	57824748	-	1	NA	NA	NA	477	NM_146168	232023	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.060000	0.611940	21(GGCTTTTAGAGG,-,0.00),22(GCTTTTAGAGGC,+,0.00)
mm_75328.1	chr8	43142954	43143154	-	1	NA	NA	NA	-1568	NM_177742	244448	Mm.64542	NM_177742	ENSMUSG00000031651	Triml1	4933403D14|BC050188	tripartite motif family-like 1	protein-coding	0.005000	0.383085	
mm_109853.1	chr12	4738282	4738482	-	1	NA	NA	NA	1	NM_029107	74855	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	0.045000	0.646766	
mm_107417.1	chr12	34984695	34984895	+	1	NA	NA	NA	34	NM_029294	75456	Mm.79179	NM_029294	ENSMUSG00000092305	Prps1l1	1700011K15Rik	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding	0.025000	0.497512	
mm_107375.1	chr12	32953783	32953983	+	1	NA	NA	NA	-62	NM_013635	19027	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	0.100000	0.676617	
mm_10021.1	chr1	192074426	192074626	-	1	NA	NA	NA	18073	NM_011633	22033	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.020000	0.527363	
mm_98000.1	chr11	84173355	84173555	+	1	NA	NA	NA	-5979	NM_001037932	628813	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690|OTTMUSG00000000997	predicted gene 11437	protein-coding	0.000000	0.467662	
mm_173145.1	chrX	21922534	21922734	+	1	NA	NA	NA	207734	NM_020049	56774	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	0.010000	0.378109	73(AATTTTAAAAGG,-,0.00)
mm_118538.1	chr14	16365083	16365283	+	1	NA	NA	NA	-23	NM_009409	21974	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.080000	0.621891	
mm_8016.1	chr1	134955743	134955943	-	1	NA	NA	NA	97	NM_001081307	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.060000	0.641791	
mm_102738.1	chr11	67251647	67251847	-	1	NA	NA	NA	13935	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.040000	0.477612	
mm_73566.1	chr8	109608649	109608849	+	1	NA	NA	NA	-76	NM_020046	56749	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	0.055000	0.542289	
mm_122699.1	chr14	52103901	52104101	-	1	NA	NA	NA	27	NM_001170982	15381	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	0.100000	0.621891	
mm_72564.1	chr8	84125890	84126090	+	1	NA	NA	NA	1	NM_001013384	244550	Mm.334654	NM_001013384	ENSMUSG00000012889	Podnl1	5832418A03Rik|Gm506	podocan-like 1	protein-coding	0.030000	0.587065	
mm_93761.1	chr10	120193328	120193528	-	1	NA	NA	NA	8109	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.030000	0.497512	
mm_90372.1	chr10	127181723	127181923	+	1	NA	NA	NA	-1178	NM_177615	216441	Mm.248373	NM_177615	ENSMUSG00000040441	Slc26a10	C78409|D630010I07	solute carrier family 26, member 10	protein-coding	0.020000	0.547264	
mm_138179.1	chr17	34267274	34267474	+	1	NA	NA	NA	4147	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.020000	0.552239	
mm_110326.1	chr12	34906832	34907032	-	1	NA	NA	NA	10163	NM_001271386	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.175000	0.791045	
mm_113008.1	chr13	21897092	21897292	+	1	NA	NA	NA	-143	NR_035500	100316716		NR_035500	ENSMUSG00000088148	Mir1983	mmu-mir-1983	microRNA 1983	ncRNA	0.030000	0.512438	
mm_100826.1	chr11	5381640	5381840	-	1	NA	NA	NA	0	NM_001290501	407821	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0.005000	0.457711	
mm_164888.1	chr18	61315846	61316046	-	1	NA	NA	NA	84485	NM_133249	170826	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0.025000	0.572139	
mm_164178.1	chr15	76234863	76235063	-	1	NA	NA	NA	-3585	NM_011117	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.020000	0.517413	
mm_12554.1	chr2	72442996	72443196	+	1	NA	NA	NA	-33123	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.005000	0.417910	
mm_163622.1	chr13	55449865	55450065	+	1	NA	NA	NA	-3141	NR_105908	102466770		NR_105908	ENSMUSG00000099058	Mir6943	Gm27791|mmu-mir-6943	microRNA 6943	ncRNA	0.020000	0.567164	
mm_106125.1	chr11	116412942	116413142	-	1	NA	NA	NA	-10	NM_027258	217340	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.155000	0.800995	
mm_88242.1	chr10	72634230	72634430	+	1	NA	NA	NA	-20516	NM_025635	52696	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	0.020000	0.512438	
mm_55652.1	chr6	72371171	72371371	-	1	NA	NA	NA	-4299	NM_001331167	66510	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0.015000	0.502488	
mm_41300.1	chr5	90465082	90465282	+	1	NA	NA	NA	4312	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.005000	0.363184	
mm_103262.1	chr11	71033371	71033571	-	1	NA	NA	NA	146	NM_134022	103712	Mm.27768	NM_134022		6330403K07Rik	AI415455|AV161034|UGS148	RIKEN cDNA 6330403K07 gene	protein-coding	0.055000	0.651741	
mm_150731.1	chr19	43731073	43731273	+	1	NA	NA	NA	21827	NM_144874	226139	Mm.248237	NM_144874	ENSMUSG00000040018	Cox15	2900026G05Rik	cytochrome c oxidase assembly protein 15	protein-coding	0.005000	0.388060	
mm_50747.1	chr6	52776039	52776239	+	1	NA	NA	NA	62410	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.025000	0.557214	
mm_167556.1	chr9	35908264	35908464	+	1	NA	NA	NA	-58484	NR_030730	100041605	Mm.99350	NR_030730	ENSMUSG00000098705	Gm3428	-	predicted gene 3428	ncRNA	0.000000	0.388060	
mm_69307.1	chr7	128410307	128410507	-	1	NA	NA	NA	7765	NM_026418	67865	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.035000	0.502488	
mm_167798.1	chr9	123927397	123927597	+	1	NA	NA	NA	41195	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.045000	0.552239	
mm_60019.1	chr7	30776302	30776502	+	1	NA	NA	NA	-3	NM_028618	73712	Mm.30138	NM_028618	ENSMUSG00000060962	Dmkn	1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36	dermokine	protein-coding	0.035000	0.601990	
mm_126862.1	chr15	89334363	89334563	+	1	NA	NA	NA	-10	NM_019977	56727	Mm.158200	NM_019977	ENSMUSG00000022613	Miox	0610009I10Rik|AI314022|Aldrl6|C85427|RSOR	myo-inositol oxygenase	protein-coding	0.030000	0.497512	-35(GCGCATATAAAG,-,0.00),-33(GCATATAAAGAG,+,0.00)
mm_164029.1	chr14	76693885	76694085	-	1	NA	NA	NA	16417	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.015000	0.467662	
mm_49566.1	chr6	30639343	30639543	+	1	NA	NA	NA	225	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.020000	0.572139	-32(GTGTTTAAAAAG,-,0.00),-30(GTTTAAAAAGGC,+,0.00)
mm_127836.1	chr15	6837499	6837699	-	1	NA	NA	NA	36714	NM_011019	18414	Mm.10760	NM_011019	ENSMUSG00000022146	Osmr	OSMRB	oncostatin M receptor	protein-coding	0.010000	0.343284	
mm_109063.1	chr12	104344038	104344238	+	1	NA	NA	NA	5652	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.010000	0.497512	
mm_19806.1	chr2	110305676	110305876	-	1	NA	NA	NA	-51	NM_130452	170442	Mm.27335	NM_130452	ENSMUSG00000041660	Bbox1	AI874739	butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase)	protein-coding	0.010000	0.447761	
mm_33744.1	chr4	134160263	134160463	+	1	NA	NA	NA	26722	NM_144527	70012	Mm.26542	NM_144527	ENSMUSG00000037443	Cep85	2410030J07Rik|AI173272|AI173504|Ccdc21	centrosomal protein 85	protein-coding	0.075000	0.507463	
mm_58558.1	chr7	4741261	4741461	+	1	NA	NA	NA	1234	NM_001115018	232811	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	0.005000	0.587065	
mm_87219.1	chr10	40283922	40284122	+	1	NA	NA	NA	18164	NM_007444	100041585	Mm.476925	NM_007444	ENSMUSG00000063953	Amd2	AdoMetDC|Amd1|Amd3|ENSMUSG00000063953	S-adenosylmethionine decarboxylase 2	protein-coding	0.005000	0.388060	
mm_126628.1	chr15	83394020	83394220	+	1	NA	NA	NA	-26823	NR_027980	69291	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0.000000	0.517413	
mm_17504.1	chr2	28915777	28915977	-	1	NA	NA	NA	544	NM_019446	54422	Mm.21390	NM_019446	ENSMUSG00000026805	Barhl1	Dres115|MBH2	BarH-like 1 (Drosophila)	protein-coding	0.070000	0.681592	
mm_52498.1	chr6	115134892	115135092	+	1	NA	NA	NA	90	NM_001111015	20965	Mm.441431	NM_013681	ENSMUSG00000009394	Syn2	2900074L19Rik|AI836018|AI841723	synapsin II	protein-coding	0.115000	0.711443	
mm_85143.1	chr9	95815294	95815494	-	1	NA	NA	NA	29885	NM_001033210	102502	Mm.11869	NM_001033210	ENSMUSG00000049493	Pls1	AI427122	plastin 1 (I-isoform)	protein-coding	0.015000	0.442786	
mm_163087.1	chr11	69734532	69734732	-	1	NA	NA	NA	24001	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.020000	0.542289	
mm_110889.1	chr12	75549582	75549782	-	1	NA	NA	NA	46518	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.005000	0.432836	44(CAGTTTAAAGGC,-,0.00)
mm_152274.1	chr19	8819232	8819432	-	1	NA	NA	NA	-38	NM_027412	70387	Mm.261082	NM_027412	ENSMUSG00000071660	Ttc9c	2210019E14Rik|6330408J23Rik	tetratricopeptide repeat domain 9C	protein-coding	0.055000	0.557214	
mm_129026.1	chr15	74958678	74958878	-	1	NA	NA	NA	3672	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.005000	0.567164	3(GGACCTAAAAGG,-,0.00)
mm_157808.1	chrX	73930743	73930943	-	1	NA	NA	NA	7	NM_023132	19703	Mm.236969	NM_023132	ENSMUSG00000031387	Renbp	Age|Rnbp	renin binding protein	protein-coding	0.050000	0.597015	
mm_68171.1	chr7	103826462	103826662	-	1	NA	NA	NA	1366	NM_001201391	100503605	Mm.288567	NM_001201391	ENSMUSG00000052305	Hbb-bs	Beta-s|Hbbt1|Hbbt2	hemoglobin, beta adult s chain	protein-coding	0.000000	0.348259	
mm_146142.1	chr18	74764976	74765176	+	1	NA	NA	NA	13379	NR_028560	100217466		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	0.000000	0.427861	
mm_145428.1	chr18	58677830	58678030	+	1	NA	NA	NA	18448	NM_025478	66307	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	0.030000	0.502488	
mm_7381.1	chr1	107349932	107350132	-	1	NA	NA	NA	-12282	NM_025867	66957	Mm.12638	NM_025867	ENSMUSG00000026327	Serpinb11	2310046M08Rik|AU015399	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11	protein-coding	0.000000	0.402985	
mm_75750.1	chr8	69901545	69901745	-	1	NA	NA	NA	-539	NM_032004	83984	Mm.432504	NM_032004	ENSMUSG00000047654	Tssk6	Sstk|TSK-6|TSSK-6	testis-specific serine kinase 6	protein-coding	0.085000	0.626866	
mm_103533.1	chr11	77386208	77386408	-	1	NA	NA	NA	38028	NM_001291190	237860	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot homolog 2 (Drosophila)	protein-coding	0.000000	0.417910	
mm_60288.1	chr7	43987652	43987852	+	1	NA	NA	NA	-8125	NM_010640	16613	Mm.443378	NM_010640	ENSMUSG00000044485	Klk1b11	Klk11|mGK-11	kallikrein 1-related peptidase b11	protein-coding	0.005000	0.537313	-33(GTTTTTAAAGTC,+,0.00)
mm_6590.1	chr1	75264140	75264340	-	1	NA	NA	NA	-32	NM_008985	19275	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	0.065000	0.631841	
mm_150419.1	chr19	37263897	37264097	+	1	NA	NA	NA	98	NR_040299	77059	Mm.251476	NR_040298		4931408D14Rik	-	RIKEN cDNA 4931408D14 gene	ncRNA	0.045000	0.552239	
mm_27493.1	chr3	54811303	54811503	-	1	NA	NA	NA	-3612	NM_133231	170767	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	0.070000	0.532338	
mm_33069.1	chr4	123624685	123624885	+	1	NA	NA	NA	8365	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.015000	0.462687	
mm_94859.1	chr11	24077489	24077689	+	1	NA	NA	NA	-467	NM_016707	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.060000	0.621891	
mm_18495.1	chr2	62606261	62606461	-	1	NA	NA	NA	-32340	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.055000	0.462687	
mm_77709.1	chr8	126591820	126592020	-	1	NA	NA	NA	1516	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.010000	0.472637	
mm_73879.1	chr8	119344413	119344613	+	1	NA	NA	NA	-25	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.100000	0.626866	
mm_142796.1	chr17	50190351	50190551	-	1	NA	NA	NA	46	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.155000	0.766169	
mm_108101.1	chr12	74804298	74804498	+	1	NA	NA	NA	372934	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0.025000	0.407960	
mm_158793.1	chrX	167229063	167229263	-	1	NA	NA	NA	-19945	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.010000	0.432836	
mm_139257.1	chr17	47737091	47737291	+	1	NA	NA	NA	154	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.140000	0.761194	
mm_66093.1	chr7	30973374	30973574	-	1	NA	NA	NA	-5	NM_001164184	54135	Mm.4067	NM_017405	ENSMUSG00000001247	Lsr	ILDR3|Lisch7	lipolysis stimulated lipoprotein receptor	protein-coding	0.075000	0.721393	
mm_105533.1	chr11	106301085	106301285	-	1	NA	NA	NA	711	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.030000	0.562189	
mm_44775.1	chr5	32030969	32031169	-	1	NA	NA	NA	-105403	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.015000	0.417910	
mm_40350.1	chr5	45670139	45670339	+	1	NA	NA	NA	314	NM_019438	54392	Mm.32012	NM_019438	ENSMUSG00000015880	Ncapg	5730507H05Rik|Hcapg|MFT.M05.13	non-SMC condensin I complex, subunit G	protein-coding	0.110000	0.681592	
mm_26319.1	chr3	142521542	142521742	+	1	NA	NA	NA	-8694	NM_001083312	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.000000	0.373134	
mm_46386.1	chr5	104018301	104018501	-	1	NA	NA	NA	3395	NM_053262	114664	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0.020000	0.482587	
mm_145649.1	chr18	61128901	61129101	+	1	NA	NA	NA	11533	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.030000	0.527363	
mm_50450.1	chr6	48905038	48905238	+	1	NA	NA	NA	152	NM_001161621	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.010000	0.582090	
mm_4976.1	chr1	191328065	191328265	+	1	NA	NA	NA	2200	NM_025864	66950	Mm.236300	NM_025864	ENSMUSG00000026627	Tmem206	2310028N02Rik|AI118576	transmembrane protein 206	protein-coding	0.030000	0.517413	-34(GCCTAGAAAGGC,-,0.00)
mm_119755.1	chr14	54166434	54166634	+	1	NA	NA	NA	87395	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.477612	
mm_1463.1	chr1	69681183	69681383	+	1	NA	NA	NA	4677	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.015000	0.407960	
mm_96403.1	chr11	67250807	67251007	+	1	NA	NA	NA	13095	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.015000	0.477612	
mm_566.1	chr1	38035645	38035845	+	1	NA	NA	NA	37735	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.010000	0.562189	
mm_82314.1	chr9	7872897	7873097	-	1	NA	NA	NA	173	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.040000	0.641791	
mm_73997.1	chr8	120739568	120739768	+	1	NA	NA	NA	1029	NM_001301811	15900	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.030000	0.592040	
mm_37165.1	chr4	117156059	117156259	-	1	NA	NA	NA	-27	NM_009098	20116	Mm.260904	NM_009098	ENSMUSG00000047675	Rps8	-	ribosomal protein S8	protein-coding	0.105000	0.656716	
mm_42943.1	chr5	122989831	122990031	+	1	NA	NA	NA	577	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.030000	0.447761	48(GGCTTTTAAAGA,-,0.00),49(GCTTTTAAAGAG,+,0.00)
mm_117454.1	chr13	74808644	74808844	-	1	NA	NA	NA	16	NM_001301153	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.010000	0.572139	
mm_169523.1	chr14	90078445	90078645	-	1	NA	NA	NA	-48346	NR_045712	74967	Mm.390704	NR_045712		4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA	0.025000	0.462687	
mm_49674.1	chr6	31574886	31575086	+	1	NA	NA	NA	-11049	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	0.005000	0.412935	
mm_93025.1	chr10	87930766	87930966	-	1	NA	NA	NA	-35805	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.020000	0.398010	-61(CTTTTTAAACAA,+,0.00)
mm_6184.1	chr1	65109990	65110190	-	1	NA	NA	NA	-6727	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.060000	0.567164	
mm_749.1	chr1	43561275	43561475	+	1	NA	NA	NA	115624	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.010000	0.388060	
mm_65241.1	chr7	19818726	19818926	-	1	NA	NA	NA	3929	NM_033601	12051	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.020000	0.487562	
mm_131966.1	chr16	24681652	24681852	+	1	NA	NA	NA	-40103	NM_001145954	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.010000	0.417910	
mm_90691.1	chr10	128971097	128971297	+	1	NA	NA	NA	-10209	NM_027853	71664	Mm.337232	NM_027853	ENSMUSG00000025347	Mettl7b	0610006F02Rik|AI266817	methyltransferase like 7B	protein-coding	0.005000	0.422886	
mm_46158.1	chr5	96161661	96161861	-	1	NA	NA	NA	-6	NM_001285514	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.095000	0.666667	
mm_127823.1	chr15	5244070	5244270	-	1	NA	NA	NA	17	NM_001136079	19219	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.075000	0.651741	
mm_62513.1	chr7	102210506	102210706	+	1	NA	NA	NA	271	NM_001291358	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.040000	0.582090	
mm_149290.1	chr19	10674946	10675146	+	1	NA	NA	NA	3025	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.020000	0.577114	
mm_24798.1	chr3	95549954	95550154	+	1	NA	NA	NA	-9623	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.010000	0.422886	
mm_54978.1	chr6	48739361	48739561	-	1	NA	NA	NA	414	NM_008376	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.005000	0.353234	
mm_138543.1	chr17	35262994	35263194	+	1	NA	NA	NA	0	NM_010380	14964	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	0.110000	0.681592	
mm_128434.1	chr15	50682473	50682673	-	1	NA	NA	NA	206476	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.010000	0.447761	
mm_121671.1	chr14	12466901	12467101	-	1	NA	NA	NA	-121136	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	0.010000	0.417910	
mm_138731.1	chr17	36958527	36958727	+	1	NA	NA	NA	35	NM_029602	76416	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	0.100000	0.577114	
mm_147450.1	chr18	46572835	46573035	-	1	NA	NA	NA	1598	NM_173394	225471	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.020000	0.477612	
mm_163341.1	chr12	15010525	15010725	+	1	NA	NA	NA	39764	NR_045960	73972	Mm.107680	NR_045960		4930448C13Rik	-	RIKEN cDNA 4930448C13 gene	ncRNA	0.000000	0.343284	
mm_97643.1	chr11	79329490	79329690	+	1	NA	NA	NA	-10302	NM_010897	18015	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0.015000	0.402985	15(ACTTTTAAAGAT,+,0.00)
mm_60951.1	chr7	47050537	47050737	+	1	NA	NA	NA	-3	NM_026436	67893	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.090000	0.651741	
mm_52045.1	chr6	97179101	97179301	+	1	NA	NA	NA	-77	NM_001081111	232286	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	0.120000	0.686567	
mm_76764.1	chr8	95744533	95744733	-	1	NA	NA	NA	8581	NR_106041	102465650		NR_106041	ENSMUSG00000106145	Mir7073	mmu-mir-7073	microRNA 7073	ncRNA	0.000000	0.398010	
mm_124007.1	chr14	76098441	76098641	-	1	NA	NA	NA	12274	NM_026177	67467	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0.020000	0.477612	5(CCTTTAAGAGAA,+,0.00)
mm_157080.1	chrX	9435794	9435994	-	1	NA	NA	NA	33430	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.417910	
mm_149546.1	chr19	12595594	12595794	+	1	NA	NA	NA	872	NR_015503	74333	Mm.329744	NR_015503	ENSMUSG00000086213	A330040F15Rik	-	RIKEN cDNA A330040F15 gene	ncRNA	0.035000	0.552239	
mm_162091.1	chrX	37480277	37480477	+	1	NA	NA	NA	40	NM_001039689	434759	Mm.296444	NM_001039689	ENSMUSG00000079635	Rhox4c	Rhox4.3|Rhox4b	reproductive homeobox 4C	protein-coding	0.045000	0.532338	
mm_138247.1	chr17	34589773	34589973	+	1	NA	NA	NA	67	NM_134116	106512	Mm.26584	NM_134116	ENSMUSG00000034786	Gpsm3	AA960287|AGS4	G-protein signalling modulator 3 (AGS3-like, C. elegans)	protein-coding	0.025000	0.597015	
mm_13215.1	chr2	96317841	96318041	+	1	NA	NA	NA	-228	NM_001289742	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.025000	0.532338	
mm_23874.1	chr3	83030104	83030304	+	1	NA	NA	NA	4051	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.025000	0.398010	
mm_143724.1	chr17	81375989	81376189	-	1	NA	NA	NA	-311004	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.015000	0.467662	
mm_45016.1	chr5	38540124	38540324	-	1	NA	NA	NA	21371	NM_011715	22388	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0.015000	0.482587	
mm_66779.1	chr7	46919851	46920051	-	1	NA	NA	NA	-21	NM_021884	22088	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	0.140000	0.746269	
mm_60897.1	chr7	46422570	46422770	+	1	NA	NA	NA	26202	NM_001112739	16502	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.010000	0.472637	
mm_27074.1	chr3	28781017	28781217	-	1	NA	NA	NA	-194	NM_177586	208691	Mm.193670	NM_177586	ENSMUSG00000050192	Eif5a2	9630038B20|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding	0.090000	0.641791	
mm_171038.1	chr2	92183977	92184177	+	1	NA	NA	NA	-105	NM_138755	192285	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0.000000	0.577114	
mm_154906.1	chrX	21068341	21068541	+	1	NA	NA	NA	-47	NM_001085393	278203		NM_001085393	ENSMUSG00000037167	Spaca5	Gm718|Lyze	sperm acrosome associated 5	protein-coding	0.005000	0.452736	-43(GCTCATAAAGCC,+,0.00)
mm_74391.1	chr8	3155150	3155350	-	1	NA	NA	NA	124367	NM_010568	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.005000	0.298507	38(GACTATTTATGG,-,0.00),40(CTATTTATGGAG,+,0.00)
mm_66240.1	chr7	35537640	35537840	-	1	NA	NA	NA	4	NM_028034	71981	Mm.47904	NM_028034	ENSMUSG00000030491	Tdrd12	2410004F06Rik|2410070K17Rik|ECAT8|EG434165|G1-476-14|repro23	tudor domain containing 12	protein-coding	0.060000	0.641791	
mm_55428.1	chr6	65779539	65779739	-	1	NA	NA	NA	677	NM_029549	70779	Mm.263355	NM_027547	ENSMUSG00000029913	Prdm5	4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2	PR domain containing 5	protein-coding	0.015000	0.462687	
mm_71404.1	chr8	46432922	46433122	+	1	NA	NA	NA	-38015	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.000000	0.378109	62(CATCATAAAAGG,-,0.00)
mm_63699.1	chr7	130645398	130645598	+	1	NA	NA	NA	-47058	NM_001347637	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.015000	0.457711	-8(CCACATATAGCC,+,0.00)
mm_153014.1	chr19	30625356	30625556	-	1	NA	NA	NA	-75960	NM_010051	13380	Mm.214717	NM_010051	ENSMUSG00000024868	Dkk1	mdkk-1	dickkopf WNT signaling pathway inhibitor 1	protein-coding	0.000000	0.472637	
mm_15993.1	chr2	167061180	167061380	+	1	NA	NA	NA	-1654	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.010000	0.442786	
mm_28033.1	chr3	83601447	83601647	-	1	NA	NA	NA	-27429	NR_036591	69460	Mm.389464	NR_036591	ENSMUSG00000101334	1700028M03Rik	-	RIKEN cDNA 1700028M03 gene	ncRNA	0.005000	0.442786	
mm_160541.1	chr9	40992620	40992820	-	1	NA	NA	NA	11908	NM_001281954	54698	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	0.015000	0.487562	4(AGCTTTAAAAAG,-,0.00),5(GCTTTAAAAAGC,+,0.00),6(CTTTAAAAAGCT,+,0.00)
mm_56296.1	chr6	91668412	91668612	-	1	NA	NA	NA	-15555	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.005000	0.522388	
mm_116836.1	chr13	54687653	54687853	-	1	NA	NA	NA	55	NM_001146025	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.160000	0.746269	
mm_161363.1	chr14	58072586	58072786	+	1	NA	NA	NA	0	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.050000	0.467662	
mm_165687.1	chr3	90854285	90854485	-	1	NA	NA	NA	127479	NM_207263	384997	Mm.316644	NM_207263	ENSMUSG00000042250	Pglyrp4	Gm1478|Gm413	peptidoglycan recognition protein 4	protein-coding	0.005000	0.388060	-32(GCTTTTAAATGC,+,0.00),-32(GCTTTTAAATGC,-,0.00)
mm_79668.1	chr9	59665217	59665417	+	1	NA	NA	NA	8949	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.020000	0.552239	67(TCCTCTAAATGG,-,0.00)
mm_146194.1	chr18	76165066	76165266	+	1	NA	NA	NA	-5386	NR_105776	102465184		NR_105776	ENSMUSG00000098276	Mir6358	Gm27830|mmu-mir-6358	microRNA 6358	ncRNA	0.025000	0.582090	
mm_141592.1	chr17	32420901	32421101	-	1	NA	NA	NA	-26	NR_073184	57757	Mm.86752	NM_021319	ENSMUSG00000079563	Pglyrp2	C730002N09Rik|PGRP-L|Pglyrpl|tagL	peptidoglycan recognition protein 2	protein-coding	0.030000	0.537313	
mm_31190.1	chr4	43562611	43562811	+	1	NA	NA	NA	77	NM_013497	12913	Mm.12407	NM_013497	ENSMUSG00000028466	Creb3	AU044960|AW538053|C80076|LZIP|LZIP-1|LZIP-2|Luman	cAMP responsive element binding protein 3	protein-coding	0.060000	0.562189	
mm_34573.1	chr4	150063451	150063651	+	1	NA	NA	NA	-4903	NR_029751	723848		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0.010000	0.447761	
mm_80540.1	chr9	80399404	80399604	+	1	NA	NA	NA	65934	NM_022016	63859	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	0.035000	0.462687	
mm_113667.1	chr13	42709234	42709434	+	1	NA	NA	NA	-247	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.035000	0.592040	
mm_113109.1	chr13	24416548	24416748	+	1	NA	NA	NA	1526	NM_001284520	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.010000	0.512438	
mm_117662.1	chr13	93499355	93499555	-	1	NA	NA	NA	353	NM_021310	57748	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	0.120000	0.706468	
mm_95206.1	chr11	43586970	43587170	+	1	NA	NA	NA	14492	NM_008375	16204	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0.010000	0.393035	
mm_126694.1	chr15	85028851	85029051	+	1	NA	NA	NA	-8111	NM_133750	73225	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0.005000	0.532338	
mm_16049.1	chr2	167752942	167753142	+	1	NA	NA	NA	61865	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.010000	0.597015	
mm_133904.1	chr16	97548627	97548827	+	1	NA	NA	NA	12644	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.005000	0.313433	
mm_107297.1	chr12	30884224	30884424	+	1	NA	NA	NA	0	NM_001159743	100294583	Mm.399726	NM_001159743	ENSMUSG00000054204	Fam150b	6230419C23Rik	family with sequence similarity 150, member B	protein-coding	0.110000	0.676617	
mm_154440.1	chrM	1194	1394	-	1	NA	NA	NA	NA	NA									0.020000	0.338308	
mm_150385.1	chr19	36348318	36348518	+	1	NA	NA	NA	-30649	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.200000	0.825871	
mm_103505.1	chr11	76604530	76604730	-	1	NA	NA	NA	-26891	NM_198894	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.010000	0.442786	
mm_90821.1	chr10	7919987	7920187	-	1	NA	NA	NA	36036	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.015000	0.447761	
mm_1785.1	chr1	78537886	78538086	+	1	NA	NA	NA	26926	NM_026713	68393	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	0.030000	0.527363	
mm_142954.1	chr17	56117444	56117644	-	1	NA	NA	NA	4	NM_025874	66968	Mm.254985	NM_025874	ENSMUSG00000011305	Plin5	2310076L09Rik|AI415325|AW109675|Lsdp5|MLDP|PAT-1	perilipin 5	protein-coding	0.075000	0.696517	
mm_44553.1	chr5	24601781	24601981	-	1	NA	NA	NA	121	NM_025891	66993	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.050000	0.557214	
mm_171275.1	chr3	8882331	8882531	-	1	NA	NA	NA	41426	NM_025434	66230	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.015000	0.507463	
mm_65881.1	chr7	29726876	29727076	-	1	NA	NA	NA	39	NM_029714	76718	Mm.69030	NM_029714	ENSMUSG00000049123	Catsperg2	1700067C01Rik|CATSPERG	catsper channel auxiliary subunit gamma 2	protein-coding	0.050000	0.567164	
mm_66375.1	chr7	43659669	43659869	-	1	NA	NA	NA	392	NM_031181	83382	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.030000	0.477612	
mm_5550.1	chr1	38627985	38628185	-	1	NA	NA	NA	-841	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.045000	0.547264	
mm_116500.1	chr13	44982728	44982928	-	1	NA	NA	NA	19268	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.020000	0.601990	
mm_15802.1	chr2	164460986	164461186	+	1	NA	NA	NA	115	NM_025575	66460	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0.130000	0.731343	
mm_12106.1	chr2	61582064	61582264	+	1	NA	NA	NA	3578	NM_011529	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.010000	0.353234	
mm_16419.1	chr2	180171524	180171724	+	1	NA	NA	NA	36	NM_019822	56436	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	0.150000	0.771144	
mm_171414.1	chr4	130053370	130053570	+	1	NA	NA	NA	5630	NM_028266	107581	Mm.41860	NM_028266	ENSMUSG00000040690	Col16a1	2700007F12Rik|A530052M23Rik|AI838662|CA1F	collagen, type XVI, alpha 1	protein-coding	0.030000	0.621891	
mm_1052.1	chr1	58802553	58802753	+	1	NA	NA	NA	151	NM_001080126	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.010000	0.542289	48(GGGCTTTTAAGC,-,0.00),50(GCTTTTAAGCAG,+,0.00)
mm_65467.1	chr7	25476458	25476658	-	1	NA	NA	NA	1067	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.030000	0.467662	
mm_171394.1	chr4	12233041	12233241	+	1	NA	NA	NA	-61126	NM_026558	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.025000	0.462687	84(TGGTATTAAAGA,-,0.00)
mm_154388.1	chrM	11972	12172	+	1	NA	NA	NA	NA	NA									0.005000	0.338308	
mm_78920.1	chr9	45040335	45040535	+	1	NA	NA	NA	-1909	NM_007962	14012	Mm.33240	NM_007962	ENSMUSG00000032092	Mpzl2	Eva|Eva1	myelin protein zero-like 2	protein-coding	0.025000	0.492537	
mm_211.1	chr1	16665083	16665283	+	1	NA	NA	NA	-8	NM_027415	70397	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	0.085000	0.631841	
mm_66184.1	chr7	34189388	34189588	-	1	NA	NA	NA	7159	NM_026549	68079	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.030000	0.487562	
mm_69469.1	chr7	133708934	133709134	-	1	NA	NA	NA	261	NM_009479	22276	Mm.3160	NM_009479	ENSMUSG00000030979	Uros	AI415298|UROIIIS|Uros3	uroporphyrinogen III synthase	protein-coding	0.080000	0.641791	
mm_46982.1	chr5	115300458	115300658	-	1	NA	NA	NA	432	NM_019682	56455	Mm.256858	NM_019682	ENSMUSG00000009013	Dynll1	Dlc8|Dnclc1|Pin	dynein light chain LC8-type 1	protein-coding	0.080000	0.572139	
mm_34437.1	chr4	147847828	147848028	+	1	NA	NA	NA	447	NM_198619	242747	Mm.332053	NM_198619	ENSMUSG00000059423	Zfp933	2810408P10Rik	zinc finger protein 933	protein-coding	0.020000	0.378109	
mm_141544.1	chr17	31905760	31905960	-	1	NA	NA	NA	-50068	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.040000	0.587065	
mm_132119.1	chr16	31695447	31695647	+	1	NA	NA	NA	31612	NM_001252434	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.020000	0.388060	
mm_95697.1	chr11	54370520	54370720	+	1	NA	NA	NA	-32	NM_029105	74847	Mm.486538	NM_029105	ENSMUSG00000020332	Meikin	4930404A10Rik	meiotic kinetochore factor	protein-coding	0.040000	0.587065	
mm_91610.1	chr10	41490230	41490430	-	1	NA	NA	NA	10	NM_009213	20598	Mm.953	NM_009213	ENSMUSG00000019822	Smpd2	AW108287|nSMase|nSMase1	sphingomyelin phosphodiesterase 2, neutral	protein-coding	0.080000	0.636816	
mm_117940.1	chr13	99434542	99434742	-	1	NA	NA	NA	-21816	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.020000	0.517413	
mm_108695.1	chr12	86946427	86946627	+	1	NA	NA	NA	-514	NM_001289431	217732	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.030000	0.467662	
mm_37395.1	chr4	121098120	121098320	-	1	NA	NA	NA	23	NM_172700	230709	Mm.34399	NM_172700	ENSMUSG00000043207	Zmpste24	A530043O15Rik|D030046F19|FACE1|Face-1|MADB|STE24|Ste24p	zinc metallopeptidase, STE24	protein-coding	0.030000	0.512438	
mm_55637.1	chr6	72333278	72333478	-	1	NA	NA	NA	11797	NM_138592	28035	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	0.025000	0.517413	
mm_73363.1	chr8	105595099	105595299	+	1	NA	NA	NA	-10030	NM_001081241	75687	Mm.41261	NM_001081241	ENSMUSG00000038604	Fam65a	2310066E14Rik|AI837433	family with sequence similarity 65, member A	protein-coding	0.020000	0.522388	
mm_157163.1	chrX	9465617	9465817	-	1	NA	NA	NA	3607	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.020000	0.532338	
mm_21050.1	chr2	152622019	152622219	-	1	NA	NA	NA	934	NM_001039122	654459	Mm.358531	NM_001039122	ENSMUSG00000074678	Defb25	BD-25|OTTMUSG00000015862|mBD-25	defensin beta 25	protein-coding	0.030000	0.452736	
mm_26132.1	chr3	137882564	137882764	+	1	NA	NA	NA	14989	NM_001033155	70604	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	0.010000	0.427861	
mm_28698.1	chr3	95540245	95540445	-	1	NA	NA	NA	13559	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.005000	0.497512	
mm_150779.1	chr19	44294829	44295029	+	1	NA	NA	NA	1253	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.030000	0.537313	
mm_102344.1	chr11	58093000	58093200	-	1	NA	NA	NA	-11053	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.030000	0.611940	
mm_85622.1	chr9	107614884	107615084	-	1	NA	NA	NA	-5743	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.010000	0.597015	
mm_30059.1	chr3	137552561	137552761	-	1	NA	NA	NA	-39	NM_177665	229862	Mm.246591	NM_177665	ENSMUSG00000055138	Gm4861	9230109N16|EG229862	predicted gene 4861	protein-coding	0.025000	0.477612	
mm_122643.1	chr14	51345388	51345588	-	1	NA	NA	NA	1	NR_045736	75377	Mm.402100	NR_045736		4930597G03Rik	-	RIKEN cDNA 4930597G03 gene	ncRNA	0.000000	0.442786	
mm_160758.1	chr10	85598388	85598588	+	1	NA	NA	NA	77	NM_001017525	74007	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.015000	0.562189	
mm_2688.1	chr1	127482931	127483131	+	1	NA	NA	NA	194990	NM_028135	72160	Mm.281287	NM_028135	ENSMUSG00000026347	Tmem163	2610024A01Rik|SV31	transmembrane protein 163	protein-coding	0.025000	0.427861	
mm_34215.1	chr4	140971747	140971947	+	1	NA	NA	NA	10576	NM_023374	67680	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.030000	0.552239	
mm_65052.1	chr7	18656516	18656716	-	1	NA	NA	NA	109	NM_027403	72242	Mm.326858	NM_027403	ENSMUSG00000070796	Psg21	1600019C01Rik|1600025N01Rik|1600026N13Rik|cea8	pregnancy-specific glycoprotein 21	protein-coding	0.000000	0.497512	
mm_114354.1	chr13	60940086	60940286	+	1	NA	NA	NA	1749	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding	0.015000	0.383085	63(GCTTTTATGAGA,+,0.00)
mm_166568.1	chr6	48988283	48988483	+	1	NA	NA	NA	1522	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.010000	0.477612	-11(CTTCTTATGGGC,+,0.00)
mm_64576.1	chr7	144930538	144930738	+	1	NA	NA	NA	1497	NR_039539	100628615		NR_039539	ENSMUSG00000092633	Mir3962	mmu-mir-3962|mu-mir-3962	microRNA 3962	ncRNA	0.015000	0.393035	
mm_137010.1	chr17	17830778	17830978	+	1	NA	NA	NA	66	NR_029539	387235		NR_029539	ENSMUSG00000065479	Mir125a	Mirn125a	microRNA 125a	ncRNA	0.015000	0.547264	
mm_166173.1	chr5	29636602	29636802	+	1	NA	NA	NA	67460	NM_133907	100763	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	0.000000	0.482587	
mm_143874.1	chr17	84187081	84187281	-	1	NA	NA	NA	766	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.050000	0.582090	
mm_165042.1	chr19	39031304	39031504	+	1	NA	NA	NA	24385	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.010000	0.303483	
mm_154926.1	chrX	24008571	24008771	+	1	NA	NA	NA	115908	NM_001034864	236749	Mm.296422	NM_001034864	ENSMUSG00000068113	Gm4907	EG236749	predicted gene 4907	protein-coding	0.040000	0.482587	
mm_98194.1	chr11	87794429	87794629	+	1	NA	NA	NA	745	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.015000	0.557214	
mm_13968.1	chr2	121430772	121430972	+	1	NA	NA	NA	11729	NM_145973	269344	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	0.005000	0.497512	
mm_66272.1	chr7	37366601	37366801	-	1	NA	NA	NA	403051	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.005000	0.328358	
mm_112026.1	chr12	111458549	111458749	-	1	NA	NA	NA	15988	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.005000	0.557214	
mm_92621.1	chr10	80258919	80259119	-	1	NA	NA	NA	1993	NM_001347119	14431	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0.020000	0.557214	
mm_33178.1	chr4	126058485	126058685	+	1	NA	NA	NA	20	NM_172701	230751	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	0.060000	0.562189	
mm_38405.1	chr4	139075466	139075666	-	1	NA	NA	NA	-777	NM_021358	15565	Mm.291096	NM_021358	ENSMUSG00000028747	Htr6	5-HT6	5-hydroxytryptamine (serotonin) receptor 6	protein-coding	0.145000	0.771144	
mm_158786.1	chrX	167207863	167208063	-	1	NA	NA	NA	1255	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.055000	0.522388	
mm_17571.1	chr2	30359131	30359331	-	1	NA	NA	NA	85	NM_139302	227700	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	0.135000	0.761194	
mm_135464.1	chr16	45799671	45799871	-	1	NA	NA	NA	44607	NM_153412	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology like domain, family B, member 2	protein-coding	0.000000	0.243781	
mm_110787.1	chr12	72014430	72014630	-	1	NA	NA	NA	56461	NM_181752	238252	Mm.390508	NM_181752	ENSMUSG00000043398	Gpr135	PAFR	G protein-coupled receptor 135	protein-coding	0.020000	0.492537	
mm_2426.1	chr1	95498494	95498694	+	1	NA	NA	NA	169000	NM_009183	20452	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.050000	0.592040	
mm_153912.1	chr19	47138207	47138407	-	1	NA	NA	NA	-13	NM_133746	72691	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	0.050000	0.656716	
mm_45276.1	chr5	64812690	64812890	-	1	NA	NA	NA	9267	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.035000	0.512438	
mm_49480.1	chr6	29531062	29531262	+	1	NA	NA	NA	1880	NM_001252382	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.020000	0.592040	
mm_72818.1	chr8	88118698	88118898	+	1	NA	NA	NA	39	NM_029074	382030	Mm.216574	NM_029074	ENSMUSG00000036810	Cnep1r1	5033428A16Rik|NEP1-R1|Tmem188	CTD nuclear envelope phosphatase 1 regulatory subunit 1	protein-coding	0.105000	0.656716	
mm_25644.1	chr3	121369490	121369690	+	1	NA	NA	NA	-56951	NM_028044	71994	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0.010000	0.502488	33(CCTTATAAGTCC,+,0.00)
mm_72942.1	chr8	91630966	91631166	+	1	NA	NA	NA	170588	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.005000	0.328358	
mm_158910.1	chr1	39537900	39538100	+	1	NA	NA	NA	2198	NM_028043	52846	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0.005000	0.447761	65(TGGTTTATAGGG,-,0.00)
mm_166536.1	chr6	30680409	30680609	-	1	NA	NA	NA	13240	NM_031998	83922	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	0.020000	0.522388	42(AACCTTAAAAGA,-,0.00),83(TCCTTTTTAAGG,-,0.00),85(CTTTTTAAGGTT,+,0.00)
mm_163619.1	chr13	55322044	55322244	+	1	NA	NA	NA	89	NM_025596	66494	Mm.439805	NM_025596	ENSMUSG00000021486	Prelid1	2610524G07Rik|Preli	PRELI domain containing 1	protein-coding	0.090000	0.686567	
mm_104990.1	chr11	100269851	100270051	-	1	NA	NA	NA	-80	NM_212483	68239	Mm.158190	NM_212483	ENSMUSG00000053654	Krt42	2410039E07Rik|K17n|Ka22|ecat6	keratin 42	protein-coding	0.005000	0.542289	16(GGCTATAAAGGG,-,0.00)
mm_145936.1	chr18	67289131	67289331	+	1	NA	NA	NA	8	NM_053261	114663	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0.100000	0.711443	
mm_154489.1	chrM	5767	5967	-	1	NA	NA	NA	NA	NA									0.020000	0.398010	
mm_143712.1	chr17	80727908	80728108	-	1	NA	NA	NA	17	NM_001290345	225028	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.180000	0.845771	
mm_35197.1	chr4	16163423	16163623	-	1	NA	NA	NA	120	NM_138952	192656	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.115000	0.766169	
mm_169891.1	chr16	4798126	4798326	-	1	NA	NA	NA	-8291	NM_025670	66626	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0.035000	0.492537	-30(CTTTAAATACCC,+,0.00)
mm_1434.1	chr1	67193719	67193919	+	1	NA	NA	NA	70792	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.000000	0.467662	
mm_139428.1	chr17	53566900	53567100	+	1	NA	NA	NA	29	NM_020005	18519	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.100000	0.696517	
mm_115559.1	chr13	9173381	9173581	-	1	NA	NA	NA	79600	NM_172585	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.015000	0.482587	
mm_9789.1	chr1	181257568	181257768	-	1	NA	NA	NA	-45690	NM_145514	226757	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.030000	0.517413	
mm_15707.1	chr2	164017153	164017353	+	1	NA	NA	NA	-7971	NM_001114079	381404	Mm.82301	NM_001114079	ENSMUSG00000054582	Pabpc1l	1810053B01Rik|Epab	poly(A) binding protein, cytoplasmic 1-like	protein-coding	0.010000	0.472637	
mm_86067.1	chr9	114775320	114775520	-	1	NA	NA	NA	6573	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.010000	0.631841	
mm_43427.1	chr5	136057255	136057455	+	1	NA	NA	NA	88	NM_027158	69665	Mm.75713	NM_027158	ENSMUSG00000006143	Upk3bl	2310043J07Rik	uroplakin 3B-like	protein-coding	0.025000	0.636816	
mm_62537.1	chr7	102266718	102266918	+	1	NA	NA	NA	-1006	NM_009287	20866	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0.025000	0.502488	
mm_122330.1	chr14	37109943	37110143	-	1	NA	NA	NA	58	NM_001206684	70045	Mm.271619	NM_001206684	ENSMUSG00000096001	2610528A11Rik	AW494830	RIKEN cDNA 2610528A11 gene	protein-coding	0.025000	0.542289	-88(CCTTATAAATGT,+,0.00)
mm_167412.1	chr8	107031182	107031382	+	1	NA	NA	NA	-44	NM_126165	116733	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0.095000	0.731343	-65(CCCTCTTAGAGG,-,0.00),-64(CCTCTTAGAGGA,+,0.00)
mm_87073.1	chr10	29200506	29200706	+	1	NA	NA	NA	-11037	NM_001162537	212448	Mm.132789	NM_001162537	ENSMUSG00000004360	9330159F19Rik	-	RIKEN cDNA 9330159F19 gene	protein-coding	0.005000	0.477612	
mm_167636.1	chr9	63220918	63221118	+	1	NA	NA	NA	-72057	NM_001163758	207667	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.010000	0.338308	
mm_104995.1	chr11	100355308	100355508	-	1	NA	NA	NA	733	NM_177981	15114	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.090000	0.671642	
mm_730.1	chr1	43196902	43197102	+	1	NA	NA	NA	-241	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.005000	0.527363	
mm_138910.1	chr17	43594705	43594905	+	1	NA	NA	NA	-3296	NR_045444	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.030000	0.412935	
mm_48998.1	chr6	4756618	4756818	+	1	NA	NA	NA	9412	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.025000	0.452736	
mm_88036.1	chr10	67535379	67535579	+	1	NA	NA	NA	-2390	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.120000	0.771144	
mm_22938.1	chr3	31686328	31686528	+	1	NA	NA	NA	-216275	NM_028231	72413	Mm.64790	NM_028231	ENSMUSG00000037610	Kcnmb2	2700049B16Rik|3110031N04Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 2	protein-coding	0.010000	0.597015	
mm_70463.1	chr8	11912887	11913087	+	1	NA	NA	NA	72466	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	0.035000	0.472637	
mm_147499.1	chr18	49755470	49755670	-	1	NA	NA	NA	31	NM_026854	68857	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0.120000	0.731343	
mm_52525.1	chr6	115666861	115667061	+	1	NA	NA	NA	9674	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.015000	0.402985	
mm_159266.1	chr2	156700306	156700506	+	1	NA	NA	NA	20503	NR_040505	74846	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	0.020000	0.592040	
mm_112228.1	chr12	113430527	113430727	-	1	NA	NA	NA	-58938	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.015000	0.502488	
mm_165278.1	chr2	80316875	80317075	+	1	NA	NA	NA	1509	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.005000	0.467662	
mm_156695.1	chrX	159472774	159472974	+	1	NA	NA	NA	13749	NM_001313753	78283	Mm.160079	NM_001081124	ENSMUSG00000041020	Map7d2	1600028E09Rik|2900002G04Rik|5330432J06Rik|C030036K04Rik|Mtap7d2	MAP7 domain containing 2	protein-coding	0.010000	0.467662	
mm_152865.1	chr19	24224887	24225087	-	1	NA	NA	NA	39	NM_011597	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.100000	0.661692	
mm_97876.1	chr11	83191233	83191433	+	1	NA	NA	NA	3	NM_011409	20557	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	0.030000	0.557214	
mm_40665.1	chr5	65386356	65386556	+	1	NA	NA	NA	4975	NM_011292	20005	Mm.300271	NM_011292	ENSMUSG00000047215	Rpl9	-	ribosomal protein L9	protein-coding	0.015000	0.417910	
mm_133011.1	chr16	56075413	56075613	+	1	NA	NA	NA	33	NM_001304503	66315	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0.075000	0.666667	
mm_152419.1	chr19	10673574	10673774	-	1	NA	NA	NA	4397	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.005000	0.507463	
mm_54541.1	chr6	36743286	36743486	-	1	NA	NA	NA	67975	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.035000	0.552239	
mm_139555.1	chr17	56875403	56875603	+	1	NA	NA	NA	-130	NM_030141	78625	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0.020000	0.542289	
mm_76846.1	chr8	105295977	105296177	-	1	NA	NA	NA	21	NM_177788	277978	Mm.40228	NM_177788	ENSMUSG00000043251	Exoc3l	C730015A04Rik|Exoc3l1	exocyst complex component 3-like	protein-coding	0.015000	0.572139	
mm_102003.1	chr11	51584564	51584764	-	1	NA	NA	NA	-93	NM_028398	72947	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.080000	0.626866	
mm_3749.1	chr1	156005307	156005507	+	1	NA	NA	NA	29410	NM_001160019	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.000000	0.567164	
mm_127661.1	chr15	102518646	102518846	+	1	NA	NA	NA	554	NM_009319	21357	Mm.291485	NM_009319	ENSMUSG00000023051	Tarbp2	Prbp|TRBP	TARBP2, RISC loading complex RNA binding subunit	protein-coding	0.040000	0.631841	
mm_112691.1	chr13	17310780	17310980	+	1	NA	NA	NA	383885	NM_138654	192136	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	0.000000	0.432836	
mm_142675.1	chr17	47730657	47730857	-	1	NA	NA	NA	3915	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.035000	0.597015	
mm_58237.1	chr6	145047442	145047642	-	1	NA	NA	NA	1270	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.020000	0.552239	
mm_23531.1	chr3	60626818	60627018	+	1	NA	NA	NA	125739	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.025000	0.393035	
mm_59477.1	chr7	27459258	27459458	+	1	NA	NA	NA	6940	NM_001290525	233016	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0.045000	0.636816	
mm_109798.1	chr12	3309226	3309426	-	1	NA	NA	NA	643	NM_016676	19325	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.060000	0.527363	
mm_109192.1	chr12	108554866	108555066	+	1	NA	NA	NA	246	NM_007965	14026	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.205000	0.845771	
mm_66968.1	chr7	62823643	62823843	-	1	NA	NA	NA	-359233	NM_013788	27412	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	0.025000	0.472637	
mm_97130.1	chr11	74927629	74927829	+	1	NA	NA	NA	1857	NM_001002764	103677	Mm.288460	NM_001002764	ENSMUSG00000038290	Smg6	AI317223|AU041178	Smg-6 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.000000	0.343284	
mm_81953.1	chr9	120555511	120555711	+	1	NA	NA	NA	15793	NM_178676	215446	Mm.76648	NM_178676	ENSMUSG00000041608	Entpd3	Cd39l3|HB6|NTPDase-3	ectonucleoside triphosphate diphosphohydrolase 3	protein-coding	0.005000	0.447761	
mm_130778.1	chr15	101488204	101488404	-	1	NA	NA	NA	2999	NM_016879	53622	Mm.347934	NM_016879		Krt85	AA589597|BB007925|Hb5|Krt2-18	keratin 85	protein-coding	0.005000	0.557214	
mm_69255.1	chr7	127875518	127875718	-	1	NA	NA	NA	1205	NM_146259	244219	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.055000	0.557214	
mm_122929.1	chr14	54961575	54961775	-	1	NA	NA	NA	4932	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.010000	0.597015	
mm_120068.1	chr14	56938461	56938661	+	1	NA	NA	NA	50766	NM_029498	76007	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.010000	0.333333	
mm_117620.1	chr13	91861212	91861412	-	1	NA	NA	NA	15573	NM_198415	76722	Mm.316438	NM_198415	ENSMUSG00000021622	Ckmt2	2300008A19Rik|ScCKmit	creatine kinase, mitochondrial 2	protein-coding	0.045000	0.616915	
mm_49060.1	chr6	5390254	5390454	+	1	NA	NA	NA	6968	NM_023048	65255	Mm.51340	NM_023048	ENSMUSG00000042607	Asb4	8430401O13Rik|AV117194|AW060255	ankyrin repeat and SOCS box-containing 4	protein-coding	0.030000	0.427861	
mm_42896.1	chr5	122404068	122404268	+	1	NA	NA	NA	12290	NM_019824	56378	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.040000	0.497512	47(CCATTTATGCCA,+,0.00)
mm_49759.1	chr6	34773813	34774013	+	1	NA	NA	NA	-6519	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.005000	0.313433	
mm_121153.1	chr14	102515154	102515354	+	1	NA	NA	NA	467378	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.020000	0.412935	
mm_10832.1	chr2	24386545	24386745	+	1	NA	NA	NA	1248	NM_177611	215632	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.065000	0.611940	
mm_117390.1	chr13	73347279	73347479	-	1	NA	NA	NA	5	NR_045293	432777	Mm.415319	NR_045293		D630045M09Rik	AU019512	RIKEN cDNA D630045M09 gene	ncRNA	0.010000	0.452736	
mm_96005.1	chr11	59541485	59541685	+	1	NA	NA	NA	-1101	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.005000	0.422886	
mm_65580.1	chr7	27228410	27228610	-	1	NA	NA	NA	87	NM_181593	233011	Mm.30963	NM_181593	ENSMUSG00000003752	Itpkc	9130023N17Rik	inositol 1,4,5-trisphosphate 3-kinase C	protein-coding	0.100000	0.741294	-35(GGATTTTAAAGG,-,0.00),-34(GATTTTAAAGGG,-,0.00)
mm_123624.1	chr14	68121227	68121427	-	1	NA	NA	NA	-2425	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.015000	0.482587	
mm_109226.1	chr12	108793325	108793525	+	1	NA	NA	NA	114	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.125000	0.736318	
mm_76214.1	chr8	83458259	83458459	-	1	NA	NA	NA	37	NM_001039137	56367	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	0.045000	0.597015	
mm_134873.1	chr16	28902504	28902704	-	1	NA	NA	NA	27094	NM_177718	239796	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.020000	0.393035	-37(ATCTTTTAAGGG,-,0.00),-36(TCTTTTAAGGGC,+,0.00),-35(CTTTTAAGGGCC,+,0.00)
mm_64392.1	chr7	142489086	142489286	+	1	NA	NA	NA	-9650	NM_001347549	21957	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	0.010000	0.532338	
mm_31798.1	chr4	63979862	63980062	+	1	NA	NA	NA	67053	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding	0.000000	0.512438	
mm_94115.1	chr10	128626455	128626655	-	1	NA	NA	NA	-49	NM_013765	27370	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0.065000	0.472637	20(TACTATATAAGC,-,0.00)
mm_77764.1	chr9	3002389	3002589	+	1	NA	NA	NA	36254	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.010000	0.343284	
mm_59711.1	chr7	28741894	28742094	+	1	NA	NA	NA	26	NM_023637	71984	Mm.333725	NM_023637	ENSMUSG00000070699	Sars2	2410015F05Rik|D7Ertd353e|SerRS|SerRSmt	seryl-aminoacyl-tRNA synthetase 2	protein-coding	0.060000	0.567164	
mm_38946.1	chr4	150315440	150315640	-	1	NA	NA	NA	33624	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.085000	0.572139	
mm_5575.1	chr1	39549936	39550136	-	1	NA	NA	NA	-1196	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.010000	0.477612	
mm_170384.1	chr18	6030006	6030206	-	1	NA	NA	NA	105992	NM_029277	75415	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0.005000	0.457711	
mm_124057.1	chr14	77875031	77875231	-	1	NA	NA	NA	-214	NM_025384	66148	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	0.025000	0.512438	
mm_22339.1	chr2	180711529	180711729	-	1	NA	NA	NA	-917	NM_029607	76425	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	0.010000	0.492537	
mm_88345.1	chr10	75837372	75837572	+	1	NA	NA	NA	-2591	NM_010361	14872	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.055000	0.601990	
mm_87049.1	chr10	28808791	28808991	+	1	NA	NA	NA	114616	NR_033601	114676	Mm.390292	NR_033601		4930519F09Rik	-	pyruvate dehydrogenase E1 alpha 1 pseudogene	pseudo	0.010000	0.348259	
mm_103806.1	chr11	82979877	82980077	-	1	NA	NA	NA	5088	NR_106144	102466846		NR_106144	ENSMUSG00000098840	Mir7679	Gm27908|mmu-mir-7679	microRNA 7679	ncRNA	0.005000	0.402985	
mm_165238.1	chr2	62046505	62046705	+	1	NA	NA	NA	90	NM_033552	94229	Mm.314497	NM_033552	ENSMUSG00000026904	Slc4a10	NCBE|mKIAA4136	solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	protein-coding	0.025000	0.527363	
mm_167542.1	chr9	25263114	25263314	+	1	NA	NA	NA	10775	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.005000	0.427861	
mm_141157.1	chr17	26507544	26507744	-	1	NA	NA	NA	828	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.030000	0.547264	
mm_114146.1	chr13	55322791	55322991	+	1	NA	NA	NA	836	NM_025596	66494	Mm.439805	NM_025596	ENSMUSG00000021486	Prelid1	2610524G07Rik|Preli	PRELI domain containing 1	protein-coding	0.035000	0.532338	
mm_154681.1	chrX	7921958	7922158	+	1	NA	NA	NA	2236	NM_013892	30052	Mm.4881	NM_013892	ENSMUSG00000039278	Pcsk1n	AI848336|KEP|PEN|PEN19|PEN20|Pan3|SAAS|SAASCT|bLEN|lLEN|proSAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding	0.070000	0.611940	
mm_113267.1	chr13	28951546	28951746	+	1	NA	NA	NA	2036	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.015000	0.402985	
mm_30507.1	chr3	158024590	158024790	-	1	NA	NA	NA	7064	NM_001093753	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.005000	0.318408	
mm_167527.1	chr9	21288189	21288389	+	1	NA	NA	NA	-320	NM_145416	215194	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	0.055000	0.616915	
mm_149621.1	chr19	16955870	16956070	+	1	NA	NA	NA	-148	NM_181348	353211	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.090000	0.711443	
mm_86037.1	chr9	114365574	114365774	-	1	NA	NA	NA	-1047	NR_040738	75100	Mm.78599	NR_040738		4930525D18Rik	-	RIKEN cDNA 4930525D18 gene	ncRNA	0.010000	0.487562	
mm_166995.1	chr7	46715330	46715530	-	1	NA	NA	NA	246	NM_011315	20210	Mm.14277	NM_011315	ENSMUSG00000040026	Saa3	AV098916|Saa-3|l7R3	serum amyloid A 3	protein-coding	0.000000	0.437811	
mm_104186.1	chr11	87797518	87797718	-	1	NA	NA	NA	3834	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.030000	0.572139	
mm_15392.1	chr2	156721182	156721382	+	1	NA	NA	NA	3	NM_001042487	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.150000	0.786070	
mm_156795.1	chrX	162901522	162901722	+	1	NA	NA	NA	27	NM_018737	55936	Mm.2065	NM_018737	ENSMUSG00000031360	Ctps2	A830031M15Rik|AI326475|Ctpsh	cytidine 5'-triphosphate synthase 2	protein-coding	0.030000	0.597015	18(CTTTTTAGGCGC,+,0.00)
mm_68879.1	chr7	126447547	126447747	-	1	NA	NA	NA	15426	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.010000	0.587065	
mm_95478.1	chr11	51238315	51238515	+	1	NA	NA	NA	-17997	NR_110444	71297	Mm.390420	NR_110444	ENSMUSG00000086646	Platr20	5133400J02Rik	pluripotency associated transcript 20	ncRNA	0.010000	0.442786	
mm_3773.1	chr1	156468808	156469008	+	1	NA	NA	NA	5420	NM_009230	20652	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0.015000	0.398010	
mm_102926.1	chr11	69600565	69600765	-	1	NA	NA	NA	5295	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.005000	0.497512	
mm_25139.1	chr3	102513888	102514088	+	1	NA	NA	NA	44069	NM_013609	18049	Mm.1259	NM_013609	ENSMUSG00000027859	Ngf	Ngfb	nerve growth factor	protein-coding	0.020000	0.552239	
mm_83716.1	chr9	50752453	50752653	-	1	NA	NA	NA	-199	NM_024441	69253	Mm.1980	NM_024441	ENSMUSG00000038086	Hspb2	27kDa|2810021G24Rik|HSP27|MKBP	heat shock protein 2	protein-coding	0.005000	0.597015	
mm_13176.1	chr2	92952029	92952229	+	1	NA	NA	NA	37028	NM_030725	80976	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	0.010000	0.402985	
mm_169467.1	chr1	46649880	46650080	-	1	NA	NA	NA	203529	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.010000	0.522388	85(CCTTTTATAAGT,+,0.00)
mm_164164.1	chr15	73487789	73487989	+	1	NA	NA	NA	-24671	NM_001081066	105841	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.010000	0.497512	
mm_162534.1	chr1	166003268	166003468	-	1	NA	NA	NA	-734	NM_011137	18986	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0.130000	0.716418	
mm_77212.1	chr8	114130903	114131103	-	1	NA	NA	NA	-2571	NM_024446	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	0.015000	0.462687	-82(CCCTAGAAAAGC,-,0.00)
mm_81056.1	chr9	106147849	106148049	+	1	NA	NA	NA	-6175	NR_029549	387153		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	0.025000	0.631841	
mm_131747.1	chr16	22265462	22265662	+	1	NA	NA	NA	443	NM_001330554	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding	0.135000	0.706468	
mm_28084.1	chr3	84875424	84875624	-	1	NA	NA	NA	11379	NM_001177774	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.020000	0.512438	
mm_156339.1	chrX	139009839	139010039	+	1	NA	NA	NA	75297	NM_177920	331535	Mm.211704	NM_177920	ENSMUSG00000031271	Serpina7	C730040N12Rik|Tbg	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7	protein-coding	0.005000	0.373134	
mm_78779.1	chr9	43804043	43804243	+	1	NA	NA	NA	59567	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	0.015000	0.547264	
mm_24646.1	chr3	94386823	94387023	+	1	NA	NA	NA	9491	NR_121656	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.005000	0.482587	-34(CTCCATAAAAGC,-,0.00)
mm_41168.1	chr5	87969358	87969558	+	1	NA	NA	NA	9893	NR_045924	73471	Mm.396240	NR_045924	ENSMUSG00000099605	1700066N21Rik	-	RIKEN cDNA 1700066N21 gene	ncRNA	0.010000	0.497512	88(GGCCTTATAAGG,-,0.00)
mm_53618.1	chr6	140423964	140424164	+	1	NA	NA	NA	-35	NM_144920	109135	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.190000	0.835821	
mm_67095.1	chr7	69756800	69757000	-	1	NA	NA	NA	260806	NR_045940	73796	Mm.410832	NR_045940	ENSMUSG00000108885	4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA	0.005000	0.348259	
mm_2494.1	chr1	106002746	106002946	+	1	NA	NA	NA	12440	NM_001122675	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.010000	0.442786	
mm_7762.1	chr1	131138197	131138397	-	1	NA	NA	NA	-63	NM_145508	226419	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.130000	0.736318	
mm_21633.1	chr2	164278157	164278357	-	1	NA	NA	NA	50	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.000000	0.447761	
mm_82711.1	chr9	24503184	24503384	-	1	NA	NA	NA	-144	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.180000	0.796020	
mm_63848.1	chr7	135652444	135652644	+	1	NA	NA	NA	-230	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.020000	0.492537	
mm_44354.1	chr5	17795505	17795705	-	1	NA	NA	NA	40291	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.010000	0.343284	
mm_6074.1	chr1	60974285	60974485	-	1	NA	NA	NA	-3529	NM_017480	54167	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0.010000	0.452736	
mm_171674.1	chr4	5006795	5006995	-	1	NA	NA	NA	-213589	NM_177730	242291	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	0.025000	0.487562	
mm_74430.1	chr8	3717472	3717672	-	1	NA	NA	NA	3079	NM_029465	75863	Mm.109183	NM_029465	ENSMUSG00000074491	Clec4g	4930572L20Rik	C-type lectin domain family 4, member g	protein-coding	0.010000	0.522388	
mm_103482.1	chr11	76495284	76495484	-	1	NA	NA	NA	-889	NM_001346670	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.020000	0.542289	
mm_133519.1	chr16	90830025	90830225	+	1	NA	NA	NA	-734	NR_133572	70967	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	0.100000	0.701493	
mm_106823.1	chr12	7987661	7987861	+	1	NA	NA	NA	10084	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.477612	
mm_26372.1	chr3	142560862	142561062	+	1	NA	NA	NA	466	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.005000	0.507463	
mm_140468.1	chr17	93199068	93199268	+	1	NA	NA	NA	0	NM_001315504	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.035000	0.542289	
mm_116756.1	chr13	52530648	52530848	-	1	NA	NA	NA	88	NM_001024474	68203	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0.065000	0.676617	
mm_30751.1	chr4	14929766	14929966	+	1	NA	NA	NA	-775	NM_001243100	100038514	Mm.331495	NM_001243100		Gm11837	OTTMUSG00000004551	predicted gene 11837	protein-coding	0.025000	0.517413	
mm_158867.1	chrY	1197345	1197545	-	1	NA	NA	NA	48314	NM_001326683	22290	Mm.20477	NM_009484	ENSMUSG00000068457	Uty	Hydb|mKIAA4057	ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome	protein-coding	0.000000	0.248756	
mm_18145.1	chr2	45065175	45065375	-	1	NA	NA	NA	-42098	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.407960	
mm_136154.1	chr16	87736813	87737013	-	1	NA	NA	NA	37959	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.015000	0.427861	
mm_74320.1	chr8	126848894	126849094	+	1	NA	NA	NA	96927	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.025000	0.542289	
mm_76346.1	chr8	84727123	84727323	-	1	NA	NA	NA	25766	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.020000	0.582090	
mm_33346.1	chr4	129327087	129327287	+	1	NA	NA	NA	8183	NM_009030	19646	Mm.12145	NM_009030	ENSMUSG00000057236	Rbbp4	RBAP48|mRbAp48	retinoblastoma binding protein 4	protein-coding	0.000000	0.383085	
mm_163823.1	chr14	19416735	19416935	-	1	NA	NA	NA	185752	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.015000	0.333333	
mm_116918.1	chr13	55528347	55528547	-	1	NA	NA	NA	91	NM_013739	27261	Mm.33910	NM_013739	ENSMUSG00000035711	Dok3	AI450713|Dokl	docking protein 3	protein-coding	0.035000	0.611940	
mm_24329.1	chr3	89459183	89459383	+	1	NA	NA	NA	165	NM_026784	68603	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0.045000	0.572139	
mm_37091.1	chr4	116556952	116557152	-	1	NA	NA	NA	-675	NM_029868	77110	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	0.050000	0.567164	77(GAGTCTATAAGC,-,0.00)
mm_123835.1	chr14	70630067	70630267	-	1	NA	NA	NA	-13	NM_013514	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.015000	0.592040	
mm_31040.1	chr4	41067749	41067949	+	1	NA	NA	NA	-19713	NM_007473	11832	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	0.010000	0.467662	
mm_78424.1	chr9	31211251	31211451	+	1	NA	NA	NA	464	NM_001102455	11804	Mm.19133	NM_009691	ENSMUSG00000031996	Aplp2	AI790698|APLP-2	amyloid beta (A4) precursor-like protein 2	protein-coding	0.145000	0.791045	-78(CCATTTAGAGCG,+,0.00)
mm_61235.1	chr7	64753980	64754180	+	1	NA	NA	NA	118960	NM_023239	66647	Mm.19944	NM_023239	ENSMUSG00000070520	Ndnl2	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Nsmce3|mage-g1	necdin-like 2	protein-coding	0.005000	0.497512	41(TCCTATTTAAAC,-,0.00)
mm_119907.1	chr14	54950017	54950217	+	1	NA	NA	NA	-975	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.035000	0.587065	
mm_162885.1	chr10	105574282	105574482	-	1	NA	NA	NA	97	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.110000	0.691542	
mm_141835.1	chr17	34637877	34638077	-	1	NA	NA	NA	-6906	NM_019873	56299	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0.025000	0.462687	
mm_23951.1	chr3	84869382	84869582	+	1	NA	NA	NA	5337	NM_001177774	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.005000	0.383085	-8(TTTTTTAAAGGA,+,0.00)
mm_137892.1	chr17	31681048	31681248	+	1	NA	NA	NA	3217	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.030000	0.646766	
mm_111286.1	chr12	85393993	85394193	-	1	NA	NA	NA	-19376	NM_026775	68581	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.020000	0.467662	
mm_98876.1	chr11	97801836	97802036	+	1	NA	NA	NA	2264	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.010000	0.562189	
mm_111493.1	chr12	99162565	99162765	-	1	NA	NA	NA	143	NR_038130	67639	Mm.87374	NR_038130		4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.015000	0.487562	
mm_410.1	chr1	34215207	34215407	+	1	NA	NA	NA	54977	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.025000	0.532338	
mm_68326.1	chr7	106503883	106504083	-	1	NA	NA	NA	-62910	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.293532	
mm_54485.1	chr6	35256707	35256907	-	1	NA	NA	NA	4075	NR_027875	67705	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	0.015000	0.457711	
mm_164031.1	chr14	77176820	77177020	+	1	NA	NA	NA	20157	NM_172813	239188	Mm.441158	NM_172813	ENSMUSG00000022012	Enox1	B230207J08|D230005D02Rik	ecto-NOX disulfide-thiol exchanger 1	protein-coding	0.025000	0.507463	
mm_14671.1	chr2	139493896	139494096	+	1	NA	NA	NA	76	NM_175467	228677	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	0.005000	0.412935	
mm_171592.1	chr4	147642434	147642634	-	1	NA	NA	NA	-26	NM_145078	112422	Mm.327194	NM_145078	ENSMUSG00000066000	Zfp979	2610305D13Rik|Ssm1b	zinc finger protein 979	protein-coding	0.030000	0.522388	
mm_12441.1	chr2	70843446	70843646	+	1	NA	NA	NA	-18066	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.025000	0.447761	-36(GAGTATAAATGG,-,0.00)
mm_102143.1	chr11	53618564	53618764	-	1	NA	NA	NA	1	NM_021283	16189	Mm.276360	NM_021283	ENSMUSG00000000869	Il4	BSF-1|Il-4	interleukin 4	protein-coding	0.010000	0.402985	-35(CTCTATATATAG,-,0.00),-33(CTATATATAGAG,+,0.00)
mm_96381.1	chr11	67243174	67243374	+	1	NA	NA	NA	5462	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.005000	0.427861	
mm_29041.1	chr3	102936000	102936200	-	1	NA	NA	NA	0	NM_011516	20957	Mm.243849	NM_011516	ENSMUSG00000027855	Sycp1	SCP1	synaptonemal complex protein 1	protein-coding	0.115000	0.651741	
mm_104518.1	chr11	96064913	96065113	-	1	NA	NA	NA	351	NM_172300	268470	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	0.110000	0.726368	
mm_58307.1	chr6	146212818	146213018	-	1	NA	NA	NA	278771	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.015000	0.492537	
mm_37454.1	chr4	123411910	123412110	-	1	NA	NA	NA	-99	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.100000	0.771144	-32(CCCTATAGGCCC,+,0.00)
mm_39273.1	chr5	3803101	3803301	+	1	NA	NA	NA	20	NR_033173	79264	Mm.32368	NM_030675	ENSMUSG00000000600	Krit1	2010007K12Rik|A630036P20Rik|AA432855|AI450393|AI643869|BB155247|BB235701|Ccm1	KRIT1, ankyrin repeat containing	protein-coding	0.085000	0.666667	
mm_38575.1	chr4	141817791	141817991	-	1	NA	NA	NA	8114	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.035000	0.587065	
mm_131120.1	chr16	5393601	5393801	+	1	NA	NA	NA	-137745	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.010000	0.472637	
mm_163965.1	chr14	54966396	54966596	-	1	NA	NA	NA	111	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.010000	0.572139	
mm_5140.1	chr1	9736496	9736696	-	1	NA	NA	NA	-11052	NR_040462	73331	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	0.015000	0.462687	
mm_36367.1	chr4	76435771	76435971	-	1	NA	NA	NA	-1157585	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.010000	0.467662	-34(GGGTTTAAAGGC,-,0.00)
mm_49443.1	chr6	29319167	29319367	+	1	NA	NA	NA	127	NM_001289664	330277	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	0.010000	0.522388	
mm_153804.1	chr19	46044960	46045160	-	1	NA	NA	NA	151	NM_001113408	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.130000	0.751244	
mm_68850.1	chr7	126369322	126369522	-	1	NA	NA	NA	146	NM_010689	16797	Mm.10280	NM_010689	ENSMUSG00000030742	Lat	p36-38|pp36	linker for activation of T cells	protein-coding	0.045000	0.656716	
mm_42074.1	chr5	110110028	110110228	+	1	NA	NA	NA	36	NM_001163996	675812	Mm.442122	NM_001163996	ENSMUSG00000023284	Zfp605	A830023I12Rik	zinc finger protein 605	protein-coding	0.020000	0.502488	
mm_25755.1	chr3	123429707	123429907	+	1	NA	NA	NA	-17106	NM_008939	19142	Mm.9431	NM_008939	ENSMUSG00000027978	Prss12	Bssp-3|motopsin	protease, serine 12 neurotrypsin (motopsin)	protein-coding	0.025000	0.477612	
mm_101720.1	chr11	42182245	42182445	-	1	NA	NA	NA	585	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding	0.090000	0.562189	
mm_140442.1	chr17	88530163	88530363	+	1	NA	NA	NA	139	NM_028658	73825	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0.060000	0.721393	
mm_62875.1	chr7	114745845	114746045	+	1	NA	NA	NA	179	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	0.035000	0.611940	
mm_58262.1	chr6	145267762	145267962	-	1	NA	NA	NA	17310	NR_045598	100039495	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	OTTMUSG00000025463	predicted gene 15706	ncRNA	0.010000	0.477612	
mm_35475.1	chr4	40846524	40846724	-	1	NA	NA	NA	3514	NR_039584	100628614		NR_039584	ENSMUSG00000096377	Mir5123	mmu-mir-5123|mu-mir-5123	microRNA 5123	ncRNA	0.000000	0.512438	
mm_137527.1	chr17	27398114	27398314	+	1	NA	NA	NA	40117	NR_106077	102466228		NR_106077	ENSMUSG00000106215	Mir7218	mmu-mir-7218	microRNA 7218	ncRNA	0.030000	0.547264	
mm_4317.1	chr1	171848295	171848495	+	1	NA	NA	NA	8698	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.000000	0.388060	
mm_39705.1	chr5	27262105	27262305	+	1	NA	NA	NA	270	NM_001136060	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.020000	0.537313	-86(GCATTTAAAGAG,+,0.00)
mm_1992.1	chr1	87125901	87126101	+	1	NA	NA	NA	993	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.025000	0.537313	
mm_126429.1	chr15	80572587	80572787	+	1	NA	NA	NA	90	NM_001289442	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.060000	0.527363	
mm_132075.1	chr16	30066925	30067125	+	1	NA	NA	NA	1668	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hairy and enhancer of split 1 (Drosophila)	protein-coding	0.100000	0.696517	
mm_143201.1	chr17	62780235	62780435	-	1	NA	NA	NA	100982	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.005000	0.447761	
mm_31758.1	chr4	63377024	63377224	+	1	NA	NA	NA	14675	NM_011016	18406	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0.060000	0.616915	
mm_147016.1	chr18	34578947	34579147	-	1	NA	NA	NA	59	NM_080637	75533	Mm.275430	NM_080637	ENSMUSG00000035984	Nme5	1700019D05Rik|Nm23-M5	NME/NM23 family member 5	protein-coding	0.035000	0.572139	
mm_121210.1	chr14	103053942	103054142	+	1	NA	NA	NA	7030	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.010000	0.422886	
mm_117113.1	chr13	60480267	60480467	-	1	NA	NA	NA	-121580	NM_001285917	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.030000	0.432836	
mm_12538.1	chr2	72297716	72297916	+	1	NA	NA	NA	12115	NM_178084	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.030000	0.572139	
mm_55497.1	chr6	69727056	69727256	-	1	NA	NA	NA	-399982	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.398010	
mm_59948.1	chr7	30425623	30425823	+	1	NA	NA	NA	2419	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.040000	0.621891	
mm_128745.1	chr15	64382691	64382891	-	1	NA	NA	NA	128	NM_001276461	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.185000	0.810945	
mm_117878.1	chr13	98926562	98926762	-	1	NA	NA	NA	-278	NM_178716	238799	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.105000	0.746269	
mm_115289.1	chr13	111958259	111958459	+	1	NA	NA	NA	90423	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.000000	0.497512	
mm_129308.1	chr15	77584803	77585003	-	1	NA	NA	NA	11222	NM_177820	328561	Mm.379486	NM_177820	ENSMUSG00000050014	Apol10b	9130218O11Rik	apolipoprotein L 10B	protein-coding	0.005000	0.398010	
mm_14220.1	chr2	127362715	127362915	+	1	NA	NA	NA	-471	NM_009633	11552	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	0.035000	0.552239	
mm_163273.1	chr11	115297405	115297605	-	1	NA	NA	NA	41	NM_178035	328035	Mm.21995	NM_178035	ENSMUSG00000044788	Fads6	BC044804|OTTMUSG00000021749	fatty acid desaturase domain family, member 6	protein-coding	0.100000	0.681592	
mm_24623.1	chr3	93525972	93526172	+	1	NA	NA	NA	5576	NM_016740	20195	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0.020000	0.467662	
mm_150579.1	chr19	40639957	40640157	+	1	NA	NA	NA	-19713	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.020000	0.487562	-51(TCTTTTAGACAG,+,0.00)
mm_99298.1	chr11	101338152	101338352	+	1	NA	NA	NA	7646	NM_009675	11754	Mm.67281	NM_009675	ENSMUSG00000019326	Aoc3	SSAO|VAP1	amine oxidase, copper containing 3	protein-coding	0.015000	0.522388	
mm_78623.1	chr9	38718170	38718370	+	1	NA	NA	NA	2	NM_172767	67776	Mm.290950	NM_172767	ENSMUSG00000023186	Vwa5a	5830475I06Rik|AW552491|BCSC-1|E130119J22|Loh11cr2a	von Willebrand factor A domain containing 5A	protein-coding	0.010000	0.437811	31(CACTTTTAAAGC,-,0.00),32(ACTTTTAAAGCT,+,0.00)
mm_64846.1	chr7	13014192	13014392	-	1	NA	NA	NA	-4492	NM_001024699	232879	Mm.279272	NM_001024699	ENSMUSG00000049600	Zbtb45	BB161562|Gm157|Zfp499	zinc finger and BTB domain containing 45	protein-coding	0.005000	0.417910	
mm_74017.1	chr8	121544283	121544483	+	1	NA	NA	NA	-5	NR_045903	72259	Mm.396206	NR_045903	ENSMUSG00000097424	1700030M09Rik	-	RIKEN cDNA 1700030M09 gene	ncRNA	0.025000	0.592040	
mm_16009.1	chr2	167381775	167381975	+	1	NA	NA	NA	-32697	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.030000	0.507463	
mm_77234.1	chr8	115704651	115704851	-	1	NA	NA	NA	2143	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.005000	0.333333	
mm_64665.1	chr7	4397617	4397817	-	1	NA	NA	NA	27	NM_001163014	243816	Mm.248662	NM_001163014	ENSMUSG00000078810	Gp6	9830166G18Rik|Gm469|Gpvi	glycoprotein 6 (platelet)	protein-coding	0.005000	0.522388	
mm_27483.1	chr3	53863697	53863897	-	1	NA	NA	NA	10	NM_026435	67890	Mm.23067	NM_026435	ENSMUSG00000027746	Ufm1	1810045K17Rik|AI132708|AI463323|ENSMUSG00000074598|Gm10726	ubiquitin-fold modifier 1	protein-coding	0.115000	0.681592	
mm_6239.1	chr1	66945372	66945572	-	1	NA	NA	NA	-416	NM_021285	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.010000	0.447761	
mm_57853.1	chr6	129472684	129472884	-	1	NA	NA	NA	-5	NR_132130	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.015000	0.462687	
mm_65468.1	chr7	25476478	25476678	-	1	NA	NA	NA	1047	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.030000	0.487562	
mm_80142.1	chr9	70779031	70779231	+	1	NA	NA	NA	100149	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.010000	0.358209	
mm_5998.1	chr1	58804687	58804887	-	1	NA	NA	NA	2285	NM_001080126	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.010000	0.398010	-39(CACTCTATAAGA,-,0.00)
mm_125921.1	chr15	76199430	76199630	+	1	NA	NA	NA	-124	NM_201392	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.045000	0.651741	
mm_119884.1	chr14	54897076	54897276	+	1	NA	NA	NA	3033	NM_019402	54196	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	0.055000	0.547264	-64(CCTTTTCAGGTG,+,0.00)
mm_91230.1	chr10	22301598	22301798	-	1	NA	NA	NA	-5022	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.005000	0.447761	-70(GCCTAGTTAAGG,-,0.00)
mm_170738.1	chr2	154285460	154285660	-	1	NA	NA	NA	-21684	NM_001025574	433492	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838|OTTMUSG00000015915	BPI fold containing family B, member 9B	protein-coding	0.010000	0.407960	
mm_50668.1	chr6	51537333	51537533	+	1	NA	NA	NA	-7090	NM_028035	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.015000	0.462687	
mm_83098.1	chr9	40321215	40321415	-	1	NA	NA	NA	-12157	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.010000	0.517413	
mm_161241.1	chr13	96519039	96519239	-	1	NA	NA	NA	48	NR_144623	27015	Mm.89926	NM_012048	ENSMUSG00000021668	Polk	DINP|Dinb1	polymerase (DNA directed), kappa	protein-coding	0.025000	0.402985	-87(CACTTTTTAAAG,-,0.00),-85(CTTTTTAAAGCA,+,0.00)
mm_69793.1	chr7	141117685	141117885	-	1	NA	NA	NA	21	NM_178381	71345	Mm.235813	NM_178381	ENSMUSG00000054662	Ano9	5430425C04Rik|Tmem16j|Tp53i5|Trp53i5	anoctamin 9	protein-coding	0.025000	0.606965	
mm_130217.1	chr15	95772531	95772731	-	1	NA	NA	NA	-18212	NM_175344	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.045000	0.572139	
mm_159207.1	chr2	121442973	121443173	-	1	NA	NA	NA	-472	NM_145973	269344	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	0.035000	0.557214	-33(CCTTTTAGAAAC,+,0.00)
mm_153772.1	chr19	45683436	45683636	-	1	NA	NA	NA	-23343	NM_013907	30838	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0.020000	0.502488	
mm_76933.1	chr8	105938303	105938503	-	1	NA	NA	NA	-11	NM_013640	19171	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0.005000	0.467662	49(TACTTTTAAGGG,-,0.00),50(ACTTTTAAGGGG,+,0.00)
mm_67613.1	chr7	83884174	83884374	-	1	NA	NA	NA	67	NM_030705	80889	Mm.272998	NM_030705	ENSMUSG00000070462	Mesdc1	AW061151	mesoderm development candidate 1	protein-coding	0.115000	0.691542	
mm_90233.1	chr10	121376366	121376566	+	1	NA	NA	NA	11376	NM_029364	75612	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.020000	0.507463	-25(GGCTTTTAAAAC,-,0.00),-24(GCTTTTAAAACA,+,0.00),-23(CTTTTAAAACAG,+,0.00)
mm_38098.1	chr4	134245492	134245692	-	1	NA	NA	NA	-1	NM_024215	68040	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	0.085000	0.626866	
mm_136391.1	chr16	93142123	93142323	-	1	NA	NA	NA	210966	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.025000	0.547264	
mm_111567.1	chr12	101809759	101809959	-	1	NA	NA	NA	9260	NM_011812	23876	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	0.035000	0.557214	
mm_40120.1	chr5	34975150	34975350	+	1	NA	NA	NA	-23828	NM_001163512	71729	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.030000	0.502488	
mm_18165.1	chr2	45102042	45102242	-	1	NA	NA	NA	8135	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.010000	0.442786	
mm_139429.1	chr17	53567173	53567373	+	1	NA	NA	NA	302	NM_020005	18519	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.130000	0.830846	
mm_105418.1	chr11	103686743	103686943	-	1	NA	NA	NA	10867	NM_019650	56494	Mm.195451	NM_019650	ENSMUSG00000020946	Gosr2	2310032N09Rik|C76855|Gs27|SNARE|membrin	golgi SNAP receptor complex member 2	protein-coding	0.010000	0.577114	
mm_24035.1	chr3	87650862	87651062	+	1	NA	NA	NA	32211	NM_001003912	213498	Mm.287267	NM_001003912	ENSMUSG00000041977	Arhgef11	B930073M02|E130307F09|PDZ-RhoGEF|Prg|RhoGEF|mKIAA0380	Rho guanine nucleotide exchange factor (GEF) 11	protein-coding	0.000000	0.373134	
mm_64838.1	chr7	12998018	12998218	-	1	NA	NA	NA	74	NM_009512	26459	Mm.10984	NM_009512	ENSMUSG00000030382	Slc27a5	FACVL3|FATP5|VLCS-H2|VLCSH2|Vlacsr	solute carrier family 27 (fatty acid transporter), member 5	protein-coding	0.005000	0.452736	-35(TTCCTTAAAGGC,-,0.00)
mm_108776.1	chr12	89812828	89813028	+	1	NA	NA	NA	445	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.025000	0.437811	
mm_60798.1	chr7	45621690	45621890	+	1	NA	NA	NA	-21	NM_001018013	73456	Mm.380445	NM_001018013	ENSMUSG00000064158	Izumo1	1700058F15Rik|Izumo	izumo sperm-egg fusion 1	protein-coding	0.025000	0.482587	
mm_40965.1	chr5	76995735	76995935	+	1	NA	NA	NA	-8220	NM_206935	384185	Mm.451858	NM_206935	ENSMUSG00000063820	Arl9	1700110A09Rik	ADP-ribosylation factor-like 9	protein-coding	0.020000	0.422886	-24(GTCTCTAAAAGT,-,0.00)
mm_158561.1	chrX	150435426	150435626	-	1	NA	NA	NA	5379	NM_001164686	382245	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding	0.010000	0.547264	
mm_29017.1	chr3	101924106	101924306	-	1	NA	NA	NA	247	NM_001039371	242126	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	0.150000	0.781095	
mm_14936.1	chr2	151543590	151543790	+	1	NA	NA	NA	1207	NM_001302078	14225	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.005000	0.572139	
mm_161741.1	chr17	33089217	33089417	+	1	NA	NA	NA	-50	NM_001024950	240068	Mm.121392	NM_001024950	ENSMUSG00000067424	Zfp563	D10628|D130054H01|NTfin7|Zfp413	zinc finger protein 563	protein-coding	0.050000	0.587065	
mm_2178.1	chr1	88472286	88472486	+	1	NA	NA	NA	37680	NM_008132	14659	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding	0.015000	0.492537	
mm_166975.1	chr7	44857970	44858170	-	1	NA	NA	NA	667	NM_001290767	59047	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0.020000	0.517413	
mm_32339.1	chr4	104486438	104486638	+	1	NA	NA	NA	119000	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding	0.000000	0.323383	
mm_31808.1	chr4	65604958	65605158	+	1	NA	NA	NA	72	NM_001161782	69807	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0.095000	0.661692	
mm_109765.1	chr12	118301534	118301734	+	1	NA	NA	NA	-194	NM_001166385	20688	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0.115000	0.751244	
mm_172391.1	chr7	139867356	139867556	-	1	NA	NA	NA	-27240	NM_177261	76484	Mm.44442	NM_177261	ENSMUSG00000066129	Kndc1	2410012C07Rik|B830014K08Rik|VKIND|very-kind	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding	0.000000	0.482587	
mm_168285.1	chr11	100494122	100494322	-	1	NA	NA	NA	-15742	NR_130343	102465671		NR_130343	ENSMUSG00000104854	Mir7116	mmu-mir-7116	microRNA 7116	ncRNA	0.025000	0.492537	
mm_107026.1	chr12	12993111	12993311	+	1	NA	NA	NA	-51375	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.010000	0.492537	
mm_152893.1	chr19	24862068	24862268	-	1	NA	NA	NA	-326	NM_175013	226041	Mm.105222	NM_175013	ENSMUSG00000041731	Pgm5	4833423B07|9530034F03Rik|D830025G17|aciculin	phosphoglucomutase 5	protein-coding	0.005000	0.606965	
mm_111512.1	chr12	99627832	99628032	-	1	NA	NA	NA	42	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.125000	0.771144	
mm_3125.1	chr1	134709206	134709406	+	1	NA	NA	NA	62625	NM_009307	20980	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194	synaptotagmin II	protein-coding	0.120000	0.696517	
mm_71143.1	chr8	39119033	39119233	+	1	NA	NA	NA	113266	NM_030254	80286	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	0.000000	0.492537	
mm_86858.1	chr10	21884074	21884274	+	1	NA	NA	NA	1990	NM_001161845	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.000000	0.358209	
mm_18855.1	chr2	75677486	75677686	-	1	NA	NA	NA	18296	NR_033513	627828	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	0.015000	0.492537	79(CCTTTTAAATTA,+,0.00)
mm_111779.1	chr12	104194762	104194962	-	1	NA	NA	NA	-19682	NM_001168294	238393	Mm.483584	NM_001033335	ENSMUSG00000066363	Serpina3f	2A1|BC049975	serine (or cysteine) peptidase inhibitor, clade A, member 3F	protein-coding	0.000000	0.562189	
mm_133391.1	chr16	84774134	84774334	+	1	NA	NA	NA	111	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.065000	0.656716	
mm_132511.1	chr16	37011675	37011875	+	1	NA	NA	NA	-11	NM_029977	77782	Mm.259114	NM_029977	ENSMUSG00000034206	Polq	A430110D14Rik	polymerase (DNA directed), theta	protein-coding	0.060000	0.601990	
mm_143170.1	chr17	57226192	57226392	-	1	NA	NA	NA	1844	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.020000	0.517413	
mm_164483.1	chr16	75909077	75909277	-	1	NA	NA	NA	89	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.015000	0.442786	
mm_39999.1	chr5	32637166	32637366	+	1	NA	NA	NA	26095	NM_009535	22612	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	0.000000	0.278607	
mm_63910.1	chr7	139214616	139214816	+	1	NA	NA	NA	-1409	NM_001162540	57740	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	0.020000	0.582090	
mm_103460.1	chr11	76398968	76399168	-	1	NA	NA	NA	73	NM_008750	18230	Mm.27915	NM_008750	ENSMUSG00000020844	Nxn	l11Jus13	nucleoredoxin	protein-coding	0.130000	0.756219	
mm_35202.1	chr4	19122446	19122646	-	1	NA	NA	NA	-158304	NM_013927	30952	Mm.445778	NM_013927	ENSMUSG00000056494	Cngb3	CCNC2|CNG6|Cngbeta2	cyclic nucleotide gated channel beta 3	protein-coding	0.000000	0.427861	41(TGCCTTATAAGA,-,0.00)
mm_117226.1	chr13	64153069	64153269	-	1	NA	NA	NA	30	NM_175494	238673	Mm.300065	NM_175494	ENSMUSG00000044934	Zfp367	8030486J21Rik|ZFF29a|ZFF29b|Znf367	zinc finger protein 367	protein-coding	0.140000	0.691542	
mm_89753.1	chr10	99267100	99267300	+	1	NA	NA	NA	3969	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.000000	0.348259	
mm_84002.1	chr9	57552666	57552866	-	1	NA	NA	NA	-14	NM_025837	110119	Mm.247218	NM_025837	ENSMUSG00000032306	Mpi	1110002E17Rik|AI315153|Mpi-1|Mpi1	mannose phosphate isomerase	protein-coding	0.060000	0.557214	-100(GCTTTTAGGCAA,+,0.00)
mm_55432.1	chr6	65779676	65779876	-	1	NA	NA	NA	814	NM_029549	70779	Mm.263355	NM_027547	ENSMUSG00000029913	Prdm5	4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2	PR domain containing 5	protein-coding	0.000000	0.432836	
mm_152984.1	chr19	29522104	29522304	-	1	NA	NA	NA	-78	NM_001081319	226089	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0.170000	0.815920	
mm_94918.1	chr11	29482199	29482399	+	1	NA	NA	NA	32734	NM_026465	67939	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0.020000	0.388060	
mm_60436.1	chr7	44476818	44477018	+	1	NA	NA	NA	6571	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.407960	
mm_24850.1	chr3	95736032	95736232	+	1	NA	NA	NA	-1159	NR_105981	102466787		NR_105981	ENSMUSG00000098737	Mir7014	Gm27837|mmu-mir-7014	microRNA 7014	ncRNA	0.035000	0.592040	
mm_42962.1	chr5	123128527	123128727	+	1	NA	NA	NA	4002	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.025000	0.557214	
mm_112478.1	chr13	5868785	5868985	+	1	NA	NA	NA	7396	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.005000	0.383085	-15(CTTTTAAGAGAC,+,0.00)
mm_73954.1	chr8	120335104	120335304	+	1	NA	NA	NA	-106974	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.010000	0.507463	-42(TTATTTAAAAGG,-,0.00)
mm_155086.1	chrX	48108799	48108999	+	1	NA	NA	NA	174	NM_133213	170745	Mm.129279	NM_133213	ENSMUSG00000037005	Xpnpep2	9030008G12Rik|mAPP	X-prolyl aminopeptidase (aminopeptidase P) 2, membrane-bound	protein-coding	0.015000	0.577114	
mm_164290.1	chr15	103861060	103861260	-	1	NA	NA	NA	38140	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.000000	0.437811	
mm_124396.1	chr14	111778125	111778325	-	1	NA	NA	NA	103110	NM_198865	75409	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0.005000	0.462687	
mm_26051.1	chr3	135689139	135689339	+	1	NA	NA	NA	2308	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.025000	0.502488	45(TACTTTTAAGGG,-,0.00),46(ACTTTTAAGGGG,+,0.00),47(CTTTTAAGGGGC,+,0.00)
mm_59842.1	chr7	29534947	29535147	+	1	NA	NA	NA	-29587	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.005000	0.412935	
mm_157341.1	chrX	36902759	36902959	-	1	NA	NA	NA	40	NM_029891	77286	Mm.21649	NM_029891	ENSMUSG00000044149	Nkrf	9430034D17Rik|AW124770|C80287	NF-kappaB repressing factor	protein-coding	0.105000	0.746269	
mm_65660.1	chr7	28139726	28139926	-	1	NA	NA	NA	10360	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.035000	0.631841	
mm_107469.1	chr12	37241982	37242182	+	1	NA	NA	NA	443	NM_178767	319660	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	0.015000	0.472637	
mm_128287.1	chr15	37080304	37080504	-	1	NA	NA	NA	-73002	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.005000	0.502488	
mm_145932.1	chr18	67205343	67205543	+	1	NA	NA	NA	84	NM_024190	67064	Mm.73777	NM_024190	ENSMUSG00000109901	Chmp1b	2810405I11Rik|Chmp1b1	charged multivesicular body protein 1B	protein-coding	0.115000	0.626866	
mm_13351.1	chr2	103009506	103009706	+	1	NA	NA	NA	63907	NM_175094	27402	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0.010000	0.432836	
mm_4476.1	chr1	173420495	173420695	+	1	NA	NA	NA	-9	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.020000	0.507463	
mm_12486.1	chr2	71530669	71530869	+	1	NA	NA	NA	1324	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.045000	0.492537	
mm_10084.1	chr2	3114103	3114303	+	1	NA	NA	NA	-21	NM_001310434	269233	Mm.23044	NM_001081161	ENSMUSG00000050530	Fam171a1	9630050M13Rik|AA409679	family with sequence similarity 171, member A1	protein-coding	0.010000	0.383085	
mm_12358.1	chr2	69749635	69749835	+	1	NA	NA	NA	26647	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.015000	0.417910	
mm_151661.1	chr19	4139471	4139671	-	1	NA	NA	NA	38	NM_144532	73660	Mm.379226	NM_144532	ENSMUSG00000024842	Cabp4	2410038D05Rik	calcium binding protein 4	protein-coding	0.000000	0.542289	
mm_162849.1	chr10	87456049	87456249	+	1	NA	NA	NA	37511	NM_008553	17172	Mm.136217	NM_008553	ENSMUSG00000020052	Ascl1	AI225900|ASH1|Mash1|bHLHa46	achaete-scute family bHLH transcription factor 1	protein-coding	0.005000	0.422886	
mm_51093.1	chr6	67236671	67236871	+	1	NA	NA	NA	-30208	NM_001113564	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.010000	0.422886	
mm_42546.1	chr5	116009227	116009427	+	1	NA	NA	NA	15101	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.020000	0.482587	
mm_37732.1	chr4	129573514	129573714	-	1	NA	NA	NA	27	NM_001162433	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.035000	0.646766	
mm_88189.1	chr10	70025594	70025794	+	1	NA	NA	NA	-71427	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.005000	0.412935	-82(GGATTTATAAGG,-,0.00)
mm_172690.1	chr8	60056207	60056407	+	1	NA	NA	NA	230658	NR_126087	75017	Mm.60775	NR_126087	ENSMUSG00000110406	4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA	0.015000	0.482587	
mm_41590.1	chr5	93268412	93268612	+	1	NA	NA	NA	939	NM_007635	12452	Mm.3527	NM_007635	ENSMUSG00000029385	Ccng2	-	cyclin G2	protein-coding	0.075000	0.626866	
mm_142031.1	chr17	35235639	35235839	-	1	NA	NA	NA	76	NM_010909	18038	Mm.300795	NM_010909	ENSMUSG00000042419	Nfkbil1	Def-7|IKBL	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1	protein-coding	0.060000	0.641791	
mm_170566.1	chr19	47092711	47092911	+	1	NA	NA	NA	2045	NM_011053	18572	Mm.41166	NM_011053	ENSMUSG00000025047	Pdcd11	1110021I22Rik|ALG-4|Pdcd7|mKIAA0185	programmed cell death 11	protein-coding	0.010000	0.507463	
mm_87856.1	chr10	61175114	61175314	+	1	NA	NA	NA	-48	NM_001017409	65971	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.025000	0.452736	
mm_89268.1	chr10	87860073	87860273	+	1	NA	NA	NA	-938	NM_001111274	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.040000	0.562189	
mm_14514.1	chr2	132490602	132490802	+	1	NA	NA	NA	-26	NR_028286	70371	Mm.394667	NR_028286	ENSMUSG00000086379	1700026D11Rik	-	RIKEN cDNA 1700026D11 gene	ncRNA	0.015000	0.517413	-77(GCCTTTAGAGGC,+,0.00)
mm_40429.1	chr5	53555707	53555907	+	1	NA	NA	NA	28	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.020000	0.492537	
mm_42927.1	chr5	122820904	122821104	+	1	NA	NA	NA	338	NM_021505	59008	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	0.125000	0.711443	80(TCTTATAGGGCG,+,0.00)
mm_19265.1	chr2	84886340	84886540	-	1	NA	NA	NA	252	NM_199223	269295	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0.070000	0.716418	
mm_94855.1	chr11	24076446	24076646	+	1	NA	NA	NA	-1510	NM_016707	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.070000	0.507463	39(GTGCATTAAAGA,-,0.00)
mm_5467.1	chr1	36547114	36547314	-	1	NA	NA	NA	38	NM_001310533	109346	Mm.247537	NM_026241	ENSMUSG00000079610	Ankrd39	9130416N05Rik|C030004B10Rik	ankyrin repeat domain 39	protein-coding	0.095000	0.671642	
mm_47696.1	chr5	129779081	129779281	-	1	NA	NA	NA	8072	NM_133900	100678	Mm.271784	NM_133900	ENSMUSG00000029446	Psph	AI480570|PSP|PSPase	phosphoserine phosphatase	protein-coding	0.045000	0.611940	
mm_150816.1	chr19	44401775	44401975	+	1	NA	NA	NA	5834	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.055000	0.547264	
mm_102526.1	chr11	60931740	60931940	-	1	NA	NA	NA	27	NR_027800	24082	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	0.045000	0.636816	
mm_20562.1	chr2	131079342	131079542	-	1	NA	NA	NA	7323	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.030000	0.552239	
mm_24936.1	chr3	96560187	96560387	+	1	NA	NA	NA	2330	NM_023719	56338	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.020000	0.517413	
mm_169535.1	chr1	4947199	4947399	+	1	NA	NA	NA	71435	NM_001290372	58175	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0.040000	0.537313	
mm_35945.1	chr4	53112442	53112642	-	1	NA	NA	NA	47353	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.010000	0.422886	
mm_11897.1	chr2	49890259	49890459	+	1	NA	NA	NA	102673	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.015000	0.368159	
mm_159927.1	chr6	58596528	58596728	+	1	NA	NA	NA	-44	NM_011920	26357	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP-binding cassette, sub-family G (WHITE), member 2	protein-coding	0.035000	0.507463	
mm_127288.1	chr15	100038678	100038878	+	1	NA	NA	NA	114	NM_001159361	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.155000	0.791045	
mm_89379.1	chr10	88885923	88886123	+	1	NA	NA	NA	31	NM_145423	216225	Mm.77381	NM_145423	ENSMUSG00000020062	Slc5a8	Ait|SMCT	solute carrier family 5 (iodide transporter), member 8	protein-coding	0.090000	0.701493	
mm_145148.1	chr18	46176493	46176693	+	1	NA	NA	NA	22225	NM_001170855	28105	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.010000	0.422886	21(GTCTTTAAAATG,-,0.00)
mm_17001.1	chr2	18392624	18392824	-	1	NA	NA	NA	106	NM_001190817	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.085000	0.711443	
mm_128815.1	chr15	67105057	67105257	-	1	NA	NA	NA	71725	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.005000	0.467662	
mm_142914.1	chr17	53539367	53539567	-	1	NA	NA	NA	-16	NM_173449	110332	Mm.444633	NM_173449	ENSMUSG00000044957	Pp2d1	4921523A10Rik	protein phosphatase 2C-like domain containing 1	protein-coding	0.000000	0.422886	
mm_135704.1	chr16	52468666	52468866	-	1	NA	NA	NA	-15685	NM_001331110	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.457711	
mm_144203.1	chr18	9487491	9487691	+	1	NA	NA	NA	-37441	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.005000	0.457711	
mm_23759.1	chr3	70007589	70007789	+	1	NA	NA	NA	76	NM_001018031	229389	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1	protein-coding	0.010000	0.432836	
mm_57655.1	chr6	128485556	128485756	-	1	NA	NA	NA	41064	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.020000	0.422886	67(CCCCATAAAAGT,-,0.00)
mm_71659.1	chr8	60524221	60524421	+	1	NA	NA	NA	18197	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.010000	0.388060	
mm_151592.1	chr19	3388559	3388759	-	1	NA	NA	NA	-198	NM_001039658	17771	Mm.209941	NM_010841	ENSMUSG00000024905	Mtl5	tesmin	metallothionein-like 5, testis-specific (tesmin)	protein-coding	0.015000	0.621891	
mm_110404.1	chr12	45074200	45074400	-	1	NA	NA	NA	183	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.135000	0.746269	
mm_172720.1	chr8	71741920	71742120	+	1	NA	NA	NA	-16339	NM_028715	74015	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.035000	0.567164	
mm_96017.1	chr11	59542923	59543123	+	1	NA	NA	NA	337	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.020000	0.457711	-8(CTTTTAATACCA,+,0.00)
mm_169299.1	chr14	101670348	101670548	-	1	NA	NA	NA	16481	NM_016723	50933	Mm.275970	NM_016723	ENSMUSG00000022111	Uchl3	-	ubiquitin carboxyl-terminal esterase L3 (ubiquitin thiolesterase)	protein-coding	0.005000	0.487562	-30(GCCCATAAAAAG,-,0.00),-28(CCATAAAAAGGA,+,0.00)
mm_44990.1	chr5	37824482	37824682	-	1	NA	NA	NA	3	NM_010835	17701	Mm.256509	NM_010835	ENSMUSG00000048450	Msx1	AA675338|AI324650|Hox-7|Hox7|Hox7.1|msh	msh homeobox 1	protein-coding	0.100000	0.696517	
mm_38857.1	chr4	149426167	149426367	-	1	NA	NA	NA	364	NM_022022	63958	Mm.415260	NM_022022	ENSMUSG00000028960	Ube4b	4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684	ubiquitination factor E4B	protein-coding	0.095000	0.701493	
mm_116241.1	chr13	33905626	33905826	-	1	NA	NA	NA	-18	NM_148942	97848	Mm.272188	NM_148942	ENSMUSG00000052180	Serpinb6c	C76171|C76174|SPI3C|SPIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6c	protein-coding	0.010000	0.577114	
mm_52927.1	chr6	122922650	122922850	+	1	NA	NA	NA	902	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.020000	0.462687	
mm_46055.1	chr5	92140871	92141071	-	1	NA	NA	NA	3033	NM_019490	56041	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0.030000	0.472637	
mm_125877.1	chr15	75632191	75632391	+	1	NA	NA	NA	15607	NM_011759	22701	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0.015000	0.532338	
mm_23390.1	chr3	57425553	57425753	+	1	NA	NA	NA	243	NM_145539	229302	Mm.26618	NM_145539	ENSMUSG00000027801	Tm4sf4	Iltmp	transmembrane 4 superfamily member 4	protein-coding	0.025000	0.567164	
mm_58292.1	chr6	145864789	145864989	-	1	NA	NA	NA	531	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.020000	0.427861	
mm_15795.1	chr2	164443288	164443488	+	1	NA	NA	NA	-200	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.050000	0.606965	
mm_100429.1	chr11	119456846	119457046	+	1	NA	NA	NA	-34401	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.010000	0.527363	
mm_90674.1	chr10	128900870	128901070	+	1	NA	NA	NA	-7949	NM_001042580	12512	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.000000	0.507463	
mm_164963.1	chr19	5991996	5992196	-	1	NA	NA	NA	-5953	NM_198650	381203	Mm.329638	NM_198650	ENSMUSG00000037451	Slc22a20	Gm963|OAT1-L|mOAT6	solute carrier family 22 (organic anion transporter), member 20	protein-coding	0.010000	0.557214	
mm_151443.1	chr19	57477451	57477651	+	1	NA	NA	NA	24645	NM_028115	72133	Mm.258404	NM_028115	ENSMUSG00000025086	Trub1	2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870	TruB pseudouridine (psi) synthase family member 1	protein-coding	0.030000	0.492537	
mm_46549.1	chr5	106574617	106574817	-	1	NA	NA	NA	-116551	NM_001005477	104382	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH-like 2 (Drosophila)	protein-coding	0.130000	0.756219	
mm_149664.1	chr19	18732642	18732842	+	1	NA	NA	NA	-17241	NM_153417	225997	Mm.215171	NM_153417	ENSMUSG00000024727	Trpm6	CHAK2|TRPM6/CHAK2	transient receptor potential cation channel, subfamily M, member 6	protein-coding	0.025000	0.467662	
mm_145024.1	chr18	38993180	38993380	+	1	NA	NA	NA	135	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.125000	0.746269	
mm_136772.1	chr17	9864515	9864715	+	1	NA	NA	NA	-88749	NR_045433	71092	Mm.243827	NR_045433		4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	0.015000	0.512438	
mm_47036.1	chr5	116021590	116021790	-	1	NA	NA	NA	2738	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.035000	0.562189	
mm_62245.1	chr7	98895831	98896031	+	1	NA	NA	NA	57086	NM_001285795	22411	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.020000	0.492537	-35(AACTATAAAAAG,-,0.00)
mm_67409.1	chr7	80075167	80075367	-	1	NA	NA	NA	-10	NR_045695	100859962	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.005000	0.601990	
mm_86730.1	chr10	19065408	19065608	+	1	NA	NA	NA	-50098	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.000000	0.427861	9(CCTTATAGGCAG,+,0.00)
mm_161564.1	chr16	18498723	18498923	+	1	NA	NA	NA	-48	NM_001285494	13972	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|OTTMUSG00000033458|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	0.160000	0.751244	
mm_123241.1	chr14	60197079	60197279	-	1	NA	NA	NA	31736	NR_030458	751526		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA	0.020000	0.477612	
mm_6129.1	chr1	64532330	64532530	-	1	NA	NA	NA	-374	NM_133828	12912	Mm.422634	NM_009952	ENSMUSG00000025958	Creb1	2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1	cAMP responsive element binding protein 1	protein-coding	0.115000	0.701493	
mm_16705.1	chr2	7081141	7081341	-	1	NA	NA	NA	61	NM_001110230	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.040000	0.601990	
mm_76298.1	chr8	84223354	84223554	-	1	NA	NA	NA	13588	NM_172503	212168	Mm.117094	NM_172503	ENSMUSG00000035671	Zswim4	D330002I24|E130119J17Rik	zinc finger SWIM-type containing 4	protein-coding	0.020000	0.567164	
mm_153976.1	chr19	47864350	47864550	-	1	NA	NA	NA	-1095	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.015000	0.472637	
mm_146500.1	chr18	3281665	3281865	-	1	NA	NA	NA	-18	NM_001110855	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.010000	0.432836	
mm_59385.1	chr7	26215241	26215441	+	1	NA	NA	NA	41932	NM_010000	13094	Mm.14413	NM_010000	ENSMUSG00000040660	Cyp2b9	Cyp2b	cytochrome P450, family 2, subfamily b, polypeptide 9	protein-coding	0.005000	0.402985	
mm_68659.1	chr7	118707250	118707450	-	1	NA	NA	NA	-1612	NM_019580	56209	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	0.010000	0.522388	-35(CACTATAAAAGA,-,0.00)
mm_99561.1	chr11	103697231	103697431	+	1	NA	NA	NA	379	NM_019650	56494	Mm.195451	NM_019650	ENSMUSG00000020946	Gosr2	2310032N09Rik|C76855|Gs27|SNARE|membrin	golgi SNAP receptor complex member 2	protein-coding	0.020000	0.472637	
mm_144120.1	chr18	4634843	4635043	+	1	NA	NA	NA	14	NM_001081963	240185	Mm.33179	NM_001081963	ENSMUSG00000033960	9430020K01Rik	1110056P05Rik|Gm328|Jcad|mKIAA1462	RIKEN cDNA 9430020K01 gene	protein-coding	0.110000	0.721393	
mm_139712.1	chr17	57460620	57460820	+	1	NA	NA	NA	84594	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.010000	0.457711	
mm_76942.1	chr8	105943183	105943383	-	1	NA	NA	NA	119	NM_008490	16816	Mm.1593	NM_008490	ENSMUSG00000035237	Lcat	AI046659|D8Wsu61e	lecithin cholesterol acyltransferase	protein-coding	0.035000	0.636816	
mm_158778.1	chrX	167174262	167174462	-	1	NA	NA	NA	34856	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.000000	0.333333	
mm_102357.1	chr11	58307595	58307795	-	1	NA	NA	NA	626	NM_001040686	103836	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	0.100000	0.706468	
mm_34741.1	chr4	152241919	152242119	+	1	NA	NA	NA	-32343	NM_178406	100129	Mm.23235	NM_178406	ENSMUSG00000042804	Gpr153	1110065N12Rik|AI449320|PGR1	G protein-coupled receptor 153	protein-coding	0.045000	0.577114	
mm_26775.1	chr3	9001298	9001498	-	1	NA	NA	NA	3117	NM_009412	21985	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.000000	0.407960	
mm_28916.1	chr3	98853239	98853439	-	1	NA	NA	NA	6455	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.015000	0.467662	
mm_24.1	chr1	5115108	5115308	+	1	NA	NA	NA	32122	NM_001310442	108664	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	0.000000	0.353234	
mm_3398.1	chr1	143681829	143682029	+	1	NA	NA	NA	20964	NM_145991	214498	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	0.005000	0.393035	
mm_108648.1	chr12	85987867	85988067	+	1	NA	NA	NA	91074	NM_009368	21809	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.015000	0.383085	
mm_124763.1	chr15	6663257	6663457	+	1	NA	NA	NA	-45024	NM_030168	78757	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.000000	0.363184	
mm_152318.1	chr19	9928275	9928475	-	1	NA	NA	NA	-28842	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.025000	0.532338	
mm_121012.1	chr14	79535502	79535702	+	1	NA	NA	NA	19928	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.030000	0.447761	46(CACTCTTAAAAG,-,0.00)
mm_24664.1	chr3	94486233	94486433	+	1	NA	NA	NA	3611	NR_110353	78784	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.005000	0.363184	
mm_69614.1	chr7	137303128	137303328	-	1	NA	NA	NA	11217	NM_001113415	13593	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.015000	0.402985	
mm_172369.1	chr7	123224775	123224975	+	1	NA	NA	NA	10009	NM_146198	233836	Mm.211838	NM_146198	ENSMUSG00000030769	Slc5a11	2010013B02Rik|Kst1|RKST2|SMIT2|Slc5a10	solute carrier family 5 (sodium/glucose cotransporter), member 11	protein-coding	0.015000	0.492537	
mm_97759.1	chr11	80858263	80858463	+	1	NA	NA	NA	-26	NM_029367	75622	Mm.26988	NM_029367	ENSMUSG00000053184	Spaca3	1700025M08Rik|ALLP17|Lyc3|SLLP1|mSLLP1	sperm acrosome associated 3	protein-coding	0.035000	0.542289	
mm_693.1	chr1	40580223	40580423	+	1	NA	NA	NA	96	NM_177084	110895	Mm.108602	NM_177084	ENSMUSG00000026065	Slc9a4	AW990558|D730009J23Rik|NHE4	solute carrier family 9 (sodium/hydrogen exchanger), member 4	protein-coding	0.020000	0.422886	
mm_130762.1	chr15	101364449	101364649	-	1	NA	NA	NA	-4803	NR_035462	100316694		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0.025000	0.577114	
mm_19879.1	chr2	114049251	114049451	-	1	NA	NA	NA	3524	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.025000	0.452736	
mm_127218.1	chr15	99392868	99393068	+	1	NA	NA	NA	21	NM_001171034	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.060000	0.626866	
mm_162063.1	chrX	9350535	9350735	+	1	NA	NA	NA	36	NM_001085537	547154	Mm.327545	NM_001085537	ENSMUSG00000100448	H2al1k	Gm14501|OTTMUSG00000016887	H2A histone family member L1K	protein-coding	0.010000	0.452736	
mm_61215.1	chr7	64287571	64287771	+	1	NA	NA	NA	1	NM_172742	233315	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0.130000	0.751244	
mm_164344.1	chr16	16409486	16409686	+	1	NA	NA	NA	-50555	NM_001276340	74006	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	0.000000	0.432836	
mm_64575.1	chr7	144915117	144915317	+	1	NA	NA	NA	23	NM_028184	72284	Mm.273049	NM_028184	ENSMUSG00000031072	Oraov1	2210010N10Rik|TAOS1	oral cancer overexpressed 1	protein-coding	0.100000	0.577114	
mm_91100.1	chr10	19065165	19065365	-	1	NA	NA	NA	-49855	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.010000	0.427861	-70(TTTTATAAAGAG,+,0.00),-34(GCCTTGATAAGG,-,0.00)
mm_162240.1	chrX	154995763	154995963	-	1	NA	NA	NA	-13	NM_020020	17144	Mm.196415	NM_020020	ENSMUSG00000079350	Magea8	Mage-a8	melanoma antigen, family A, 8	protein-coding	0.045000	0.527363	
mm_144865.1	chr18	36725856	36726056	+	1	NA	NA	NA	859	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.065000	0.567164	
mm_1164.1	chr1	60909253	60909453	+	1	NA	NA	NA	328	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.005000	0.402985	
mm_81291.1	chr9	108327580	108327780	+	1	NA	NA	NA	-11400	NM_008160	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.030000	0.512438	
mm_128998.1	chr15	74841709	74841909	-	1	NA	NA	NA	-166	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.010000	0.537313	
mm_30231.1	chr3	145924784	145924984	-	1	NA	NA	NA	622	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.085000	0.636816	
mm_171419.1	chr4	133601455	133601655	-	1	NA	NA	NA	613	NM_018754	55948	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	0.070000	0.611940	
mm_44624.1	chr5	25713098	25713298	-	1	NA	NA	NA	-7401	NM_020570	57434	Mm.143767	NM_020570	ENSMUSG00000028933	Xrcc2	4921524O04Rik|8030409M04Rik|RAD51|RecA	X-ray repair complementing defective repair in Chinese hamster cells 2	protein-coding	0.005000	0.517413	-39(GGTTTTAAATGC,-,0.00)
mm_41543.1	chr5	92897688	92897888	+	1	NA	NA	NA	-205	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.060000	0.582090	
mm_148952.1	chr19	7274348	7274548	+	1	NA	NA	NA	6169	NM_001320554	104383	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.045000	0.681592	
mm_168580.1	chr1	171728897	171729097	+	1	NA	NA	NA	-38135	NM_013730	27218	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	0.025000	0.512438	-33(GCCTATATAAGC,-,0.00)
mm_123504.1	chr14	66232257	66232457	-	1	NA	NA	NA	-18805	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.000000	0.517413	
mm_10452.1	chr2	14278824	14279024	+	1	NA	NA	NA	17921	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.010000	0.343284	
mm_84903.1	chr9	79961892	79962092	-	1	NA	NA	NA	15890	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.030000	0.572139	
mm_134875.1	chr16	28929578	28929778	-	1	NA	NA	NA	20	NM_177718	239796	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.110000	0.756219	
mm_121279.1	chr14	103719767	103719967	+	1	NA	NA	NA	-20435	NR_045148	70898	Mm.27548	NR_045148	ENSMUSG00000089707	Slain1os	4921525B02Rik	SLAIN motif family, member 1, opposite strand	ncRNA	0.010000	0.298507	
mm_145515.1	chr18	60443099	60443299	+	1	NA	NA	NA	58784	NM_134133	106878	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.005000	0.412935	
mm_16571.1	chr2	3422488	3422688	-	1	NA	NA	NA	60	NM_008579	104362	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	0.015000	0.432836	
mm_72681.1	chr8	84949769	84949969	+	1	NA	NA	NA	2878	NM_144929	234542	Mm.461701	NM_144929	ENSMUSG00000048617	Rtbdn	A330096I21Rik|BC022744|Rtbnd	retbindin	protein-coding	0.015000	0.527363	
mm_23929.1	chr3	83766567	83766767	+	1	NA	NA	NA	346	NM_009144	20319	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0.065000	0.651741	
mm_13078.1	chr2	91205721	91205921	+	1	NA	NA	NA	2909	NM_007387	11432	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.015000	0.492537	
mm_31438.1	chr4	48540258	48540458	+	1	NA	NA	NA	-141	NM_028137	66665	Mm.140749	NM_028137	ENSMUSG00000039693	Msantd3	2410046L14Rik|2810429P03Rik|5730528L13Rik|Mysantd3	Myb/SANT-like DNA-binding domain containing 3	protein-coding	0.190000	0.870647	
mm_112338.1	chr12	116200116	116200316	-	1	NA	NA	NA	62809	NM_146039	217935	Mm.31382	NM_146039	ENSMUSG00000042050	Wdr60	D430033N04Rik	WD repeat domain 60	protein-coding	0.005000	0.398010	
mm_21316.1	chr2	157098902	157099102	-	1	NA	NA	NA	11947	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.010000	0.552239	
mm_12651.1	chr2	74752883	74753083	+	1	NA	NA	NA	299	NR_110447	102634401	Mm.235021	NR_110447	ENSMUSG00000085015	LOC102634401	-	uncharacterized LOC102634401	ncRNA	0.155000	0.706468	
mm_44781.1	chr5	32132949	32133149	-	1	NA	NA	NA	-3423	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.060000	0.646766	
mm_65787.1	chr7	28810408	28810608	-	1	NA	NA	NA	-382	NM_177301	15388	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.065000	0.547264	
mm_28188.1	chr3	88071957	88072157	-	1	NA	NA	NA	6247	NM_172526	214191	Mm.229191	NM_172526	ENSMUSG00000051036	Ttc24	A430025D11Rik	tetratricopeptide repeat domain 24	protein-coding	0.010000	0.522388	37(CCCTAAATGGCC,+,0.00)
mm_75682.1	chr8	68062374	68062574	-	1	NA	NA	NA	-87900	NM_177698	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.145000	0.741294	
mm_67735.1	chr7	90131022	90131222	-	1	NA	NA	NA	890	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.040000	0.482587	
mm_140275.1	chr17	84956632	84956832	+	1	NA	NA	NA	-9	NM_001159497	19043	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.010000	0.432836	44(TCTTTAAGAGAG,+,0.00)
mm_98988.1	chr11	98753288	98753488	+	1	NA	NA	NA	11603	NM_001313983	21833	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.000000	0.592040	
mm_145223.1	chr18	50057012	50057212	+	1	NA	NA	NA	3830	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.000000	0.273632	34(TCCTTTTAAAAG,-,0.00),35(CCTTTTAAAAGA,+,0.00),35(CCTTTTAAAAGA,-,0.00),36(CTTTTAAAAGAA,+,0.00)
mm_86873.1	chr10	21996830	21997030	+	1	NA	NA	NA	2264	NM_011361	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.005000	0.432836	
mm_86486.1	chr10	5003333	5003533	+	1	NA	NA	NA	65630	NM_022027	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.015000	0.288557	
mm_97087.1	chr11	73138235	73138435	+	1	NA	NA	NA	-41	NM_010353	14841	Mm.42045	NM_010353	ENSMUSG00000050107	Gsg2	Haspin	germ cell associated 2, haspin	protein-coding	0.130000	0.726368	
mm_61136.1	chr7	56050247	56050447	+	1	NA	NA	NA	192	NM_010418	15204	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	0.115000	0.686567	
mm_168409.1	chr1	131157934	131158134	-	1	NA	NA	NA	4827	NM_010709	16865	Mm.276294	NM_010709	ENSMUSG00000026427	Eif2d	D1Ertd5e|Lgtn	eukaryotic translation initiation factor 2D	protein-coding	0.010000	0.517413	-97(CTCTTTTAAAAG,-,0.00),-96(TCTTTTAAAAGG,+,0.00),-96(TCTTTTAAAAGG,-,0.00),-95(CTTTTAAAAGGA,+,0.00)
mm_153120.1	chr19	33392178	33392378	-	1	NA	NA	NA	17	NM_001167818	67795	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	0.045000	0.616915	
mm_31111.1	chr4	42921815	42922015	+	1	NA	NA	NA	4664	NM_172690	230085	Mm.240965	NM_172690	ENSMUSG00000036062	Phf24	GINIP|N28178	PHD finger protein 24	protein-coding	0.005000	0.437811	
mm_75891.1	chr8	70887764	70887964	-	1	NA	NA	NA	4893	NM_053248	114479	Mm.172923	NM_053248	ENSMUSG00000000792	Slc5a5	NIS	solute carrier family 5 (sodium iodide symporter), member 5	protein-coding	0.050000	0.681592	
mm_133238.1	chr16	77071648	77071848	+	1	NA	NA	NA	57679	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.035000	0.502488	
mm_134815.1	chr16	25059172	25059372	-	1	NA	NA	NA	-367	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.070000	0.636816	
mm_87121.1	chr10	33304938	33305138	+	1	NA	NA	NA	-48681	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.005000	0.298507	
mm_162907.1	chr10	117360996	117361196	-	1	NA	NA	NA	15877	NM_001013391	432508	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.030000	0.686567	
mm_36140.1	chr4	59438286	59438486	-	1	NA	NA	NA	247	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.115000	0.771144	
mm_31166.1	chr4	43443063	43443263	+	1	NA	NA	NA	886	NM_011571	21754	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.155000	0.830846	
mm_26480.1	chr3	144677622	144677822	+	1	NA	NA	NA	42613	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.020000	0.477612	
mm_138147.1	chr17	34204748	34204948	+	1	NA	NA	NA	369	NM_011530	21355	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.065000	0.706468	
mm_59614.1	chr7	28143761	28143961	+	1	NA	NA	NA	14395	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.015000	0.557214	
mm_165804.1	chr3	144324760	144324960	+	1	NA	NA	NA	-119605	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.005000	0.437811	-28(CCTTTTAGAAGA,+,0.00)
mm_32427.1	chr4	107135033	107135233	+	1	NA	NA	NA	38242	NM_172873	242603	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	0.000000	0.293532	
mm_42464.1	chr5	115448787	115448987	+	1	NA	NA	NA	-17379	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.005000	0.452736	
mm_119195.1	chr14	32573543	32573743	+	1	NA	NA	NA	-25765	NM_001347590	107751	Mm.119274	NM_001001796	ENSMUSG00000041730	Prrxl1	Drg11|Drgx	paired related homeobox protein-like 1	protein-coding	0.005000	0.313433	
mm_57632.1	chr6	128300457	128300657	-	1	NA	NA	NA	256	NM_001080979	21679	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	0.120000	0.746269	
mm_127849.1	chr15	7398293	7398493	-	1	NA	NA	NA	2	NM_001289498	268780	Mm.203208	NM_178748	ENSMUSG00000042961	Egflam	5930412K08|AU040377	EGF-like, fibronectin type III and laminin G domains	protein-coding	0.085000	0.661692	
mm_119054.1	chr14	30677176	30677376	+	1	NA	NA	NA	22901	NM_177815	328370	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	0.015000	0.452736	-33(CTATTTTAAAGG,-,0.00),7(CTGTATTAATGG,-,0.00)
mm_22769.1	chr3	20223023	20223223	+	1	NA	NA	NA	-764	NR_105974	102465609		NR_105974	ENSMUSG00000099105	Mir7007	Gm27897|mmu-mir-7007	microRNA 7007	ncRNA	0.015000	0.383085	
mm_44159.1	chr5	150566426	150566626	+	1	NA	NA	NA	27999	NM_133898	100637	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.000000	0.457711	
mm_109793.1	chr12	3256846	3257046	-	1	NA	NA	NA	21155	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.010000	0.422886	
mm_149021.1	chr19	8756986	8757186	+	1	NA	NA	NA	-17	NM_016813	53319	Mm.7271	NM_016813	ENSMUSG00000010097	Nxf1	Mex67|Mvb1|Tap	nuclear RNA export factor 1	protein-coding	0.140000	0.711443	
mm_153349.1	chr19	39741004	39741204	-	1	NA	NA	NA	-3	NM_001039555	433247	Mm.335660	NM_001039555	ENSMUSG00000074882	Cyp2c68	9030012A22Rik	cytochrome P450, family 2, subfamily c, polypeptide 68	protein-coding	0.005000	0.383085	
mm_115570.1	chr13	10360828	10361028	-	1	NA	NA	NA	-125	NM_033269	12671	Mm.342315	NM_033269	ENSMUSG00000046159	Chrm3	Chrm-3|M3|M3R	cholinergic receptor, muscarinic 3, cardiac	protein-coding	0.040000	0.597015	
mm_93372.1	chr10	105456131	105456331	-	1	NA	NA	NA	118248	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.005000	0.318408	
mm_127435.1	chr15	101270107	101270307	+	1	NA	NA	NA	3361	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.055000	0.631841	
mm_3936.1	chr1	163762105	163762305	+	1	NA	NA	NA	-17378	NM_001305643	16579	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	0.010000	0.383085	
mm_22546.1	chr3	9034004	9034204	+	1	NA	NA	NA	-27860	NR_040597	75149	Mm.399324	NR_040597	ENSMUSG00000103116	4930539M17Rik	-	RIKEN cDNA 4930539M17 gene	ncRNA	0.025000	0.477612	
mm_142708.1	chr17	47888071	47888271	-	1	NA	NA	NA	36461	NM_028767	74123	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.020000	0.626866	
mm_73358.1	chr8	105518838	105519038	+	1	NA	NA	NA	192	NM_008289	15484	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	0.105000	0.766169	
mm_3246.1	chr1	136052852	136053052	+	1	NA	NA	NA	51	NM_014193	12292	Mm.4418	NM_014193	ENSMUSG00000026407	Cacna1s	AW493108|Cav1.1|Cchl1a3|fmd|mdg|sj	calcium channel, voltage-dependent, L type, alpha 1S subunit	protein-coding	0.035000	0.626866	
mm_134816.1	chr16	25059639	25059839	-	1	NA	NA	NA	100	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.030000	0.577114	
mm_163708.1	chr13	108465702	108465902	+	1	NA	NA	NA	149465	NM_178683	218581	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.010000	0.457711	
mm_54675.1	chr6	39377560	39377760	-	1	NA	NA	NA	47	NM_028123	72144	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0.120000	0.731343	
mm_117189.1	chr13	63563009	63563209	-	1	NA	NA	NA	2626	NM_008957	19206	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes	patched 1	protein-coding	0.070000	0.671642	
mm_117080.1	chr13	59640063	59640263	-	1	NA	NA	NA	35621	NM_001035122	105348	Mm.171335	NM_027307	ENSMUSG00000021556	Golm1	2310001L02Rik|AW125446|D030064E01Rik|GP73|Golph2|PSEC0257	golgi membrane protein 1	protein-coding	0.025000	0.582090	
mm_120312.1	chr14	63142321	63142521	+	1	NA	NA	NA	19959	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.472637	
mm_117262.1	chr13	64368923	64369123	-	1	NA	NA	NA	1497	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.005000	0.437811	
mm_143034.1	chr17	56609897	56610097	-	1	NA	NA	NA	-226	NM_153152	224904	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0.070000	0.597015	
mm_121894.1	chr14	21748530	21748730	-	1	NA	NA	NA	-8	NM_001007268	27389	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.010000	0.562189	
mm_116535.1	chr13	45875852	45876052	-	1	NA	NA	NA	89039	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.005000	0.542289	
mm_147800.1	chr18	61657992	61658192	-	1	NA	NA	NA	7446	NR_045402	328968	Mm.392305	NR_045402		Carmn	Carmen|E330013P06|Gm16908|Mir143hg	cardiac mesoderm enhancer-associated non-coding RNA	ncRNA	0.010000	0.532338	
mm_81195.1	chr9	107554542	107554742	+	1	NA	NA	NA	59	NM_019713	56289	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0.135000	0.676617	
mm_73842.1	chr8	117498182	117498382	+	1	NA	NA	NA	7	NM_172285	234779	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.105000	0.721393	
mm_66993.1	chr7	64373497	64373697	-	1	NA	NA	NA	498	NM_177893	330554	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.025000	0.432836	-85(CCCTTTAGGGTC,+,0.00)
mm_110176.1	chr12	27336856	27337056	-	1	NA	NA	NA	5762	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.005000	0.422886	-20(CAGTATAAAAGT,-,0.00)
mm_56728.1	chr6	115675779	115675979	-	1	NA	NA	NA	756	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.070000	0.611940	-18(CCTTTTAGGGAA,+,0.00)
mm_54988.1	chr6	48747648	48747848	-	1	NA	NA	NA	1551	NM_175035	317757	Mm.455917	NM_175035	ENSMUSG00000043505	Gimap5	D630024P16|E230026N22Rik	GTPase, IMAP family member 5	protein-coding	0.000000	0.447761	
mm_21041.1	chr2	152511697	152511897	-	1	NA	NA	NA	-61	NM_001039120	654457	Mm.389363	NM_001039120	ENSMUSG00000074680	Defb26	EG654457	defensin beta 26	protein-coding	0.005000	0.457711	-79(CCTTTAATGATC,+,0.00)
mm_136279.1	chr16	91069033	91069233	-	1	NA	NA	NA	12	NM_001163695	74387	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.030000	0.577114	
mm_32569.1	chr4	109836281	109836481	+	1	NA	NA	NA	-141644	NM_172296	242620	Mm.32825	NM_172296	ENSMUSG00000047143	Dmrta2	Dmrt5	doublesex and mab-3 related transcription factor like family A2	protein-coding	0.000000	0.298507	
mm_132771.1	chr16	44766009	44766209	+	1	NA	NA	NA	373	NM_021325	57781	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.015000	0.487562	
mm_62919.1	chr7	118329359	118329559	+	1	NA	NA	NA	85552	NR_027879	67745	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0.015000	0.467662	
mm_134476.1	chr16	18588725	18588925	-	1	NA	NA	NA	1846	NM_001285472	21380	Mm.295194	NM_011532	ENSMUSG00000009097	Tbx1	-	T-box 1	protein-coding	0.105000	0.691542	
mm_88849.1	chr10	80930161	80930361	+	1	NA	NA	NA	170	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.060000	0.562189	
mm_147993.1	chr18	67641269	67641469	-	1	NA	NA	NA	-33	NM_001081073	225659	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0.150000	0.711443	
mm_18525.1	chr2	63184090	63184290	-	1	NA	NA	NA	97	NM_133207	170738	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.095000	0.641791	
mm_20476.1	chr2	129592503	129592703	-	1	NA	NA	NA	-236	NM_001291020	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.020000	0.562189	
mm_3942.1	chr1	163779654	163779854	+	1	NA	NA	NA	171	NM_010629	16579	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	0.095000	0.706468	
mm_94653.1	chr11	17051761	17051961	+	1	NA	NA	NA	-73	NM_029861	380686	Mm.425666	NM_029861	ENSMUSG00000044629	Cnrip1	1500041B16Rik|3110054C06Rik|5330437A18Rik|AI854501|C2orf32	cannabinoid receptor interacting protein 1	protein-coding	0.055000	0.636816	
mm_154129.1	chr19	57274698	57274898	-	1	NA	NA	NA	838	NR_045319	78120	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	0.015000	0.517413	-33(CACTATAAAAGG,-,0.00)
mm_164778.1	chr18	3531799	3531999	+	1	NA	NA	NA	23942	NM_026505	68010	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	0.010000	0.512438	
mm_119252.1	chr14	33923564	33923764	+	1	NA	NA	NA	77	NM_145741	14560	Mm.432071	NM_145741	ENSMUSG00000021943	Gdf10	Bmp3b	growth differentiation factor 10	protein-coding	0.150000	0.736318	
mm_50725.1	chr6	52245876	52246076	+	1	NA	NA	NA	-166	NM_010450	15396	Mm.26954	NM_010450	ENSMUSG00000038210	Hoxa11	Hox-1.9|Hoxa-11	homeobox A11	protein-coding	0.050000	0.537313	
mm_172242.1	chr6	69035427	69035627	-	1	NA	NA	NA	291647	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.040000	0.592040	
mm_138687.1	chr17	35947066	35947266	+	1	NA	NA	NA	12	NR_028278	667766	Mm.29385	NR_028278		Gm8801	-	protein phosphatase 1, regulatory subunit 10 pseudogene	pseudo	0.005000	0.462687	
mm_81371.1	chr9	108853945	108854145	+	1	NA	NA	NA	2	NM_134420	171429	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.050000	0.572139	
mm_167036.1	chr7	75455439	75455639	+	1	NA	NA	NA	5	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.070000	0.611940	
mm_129942.1	chr15	84856444	84856644	-	1	NA	NA	NA	-415	NR_030731	271305	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.050000	0.462687	
mm_95019.1	chr11	32001174	32001374	+	1	NA	NA	NA	-3	NM_001290681	18197	Mm.3304	NM_008741	ENSMUSG00000020297	Nsg2	-	neuron specific gene family member 2	protein-coding	0.010000	0.412935	
mm_11928.1	chr2	52121370	52121570	+	1	NA	NA	NA	48633	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.000000	0.258706	
mm_173205.1	chrX	69606088	69606288	-	1	NA	NA	NA	245857	NM_008032	14266	Mm.466576	NM_008032	ENSMUSG00000031189	Aff2	FMR2P|Fmr2|Ox19|Oxh	AF4/FMR2 family, member 2	protein-coding	0.070000	0.582090	
mm_148584.1	chr19	5041424	5041624	+	1	NA	NA	NA	120	NM_134155	107392	Mm.29628	NM_134155	ENSMUSG00000080268	Brms1	AV003220|AW554636	breast cancer metastasis-suppressor 1	protein-coding	0.100000	0.671642	
mm_3588.1	chr1	151354888	151355088	+	1	NA	NA	NA	10490	NM_001039511	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.015000	0.378109	
mm_135287.1	chr16	38452594	38452794	-	1	NA	NA	NA	-5	NM_007414	11544	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.115000	0.741294	
mm_39145.1	chr4	155345648	155345848	-	1	NA	NA	NA	41	NM_001039079	18762	Mm.28561	NM_008860	ENSMUSG00000029053	Prkcz	AI098070|C80388|Pkcz|R74924|aPKCzeta|nPKC-zeta|zetaPKC	protein kinase C, zeta	protein-coding	0.070000	0.646766	
mm_83973.1	chr9	57261481	57261681	-	1	NA	NA	NA	1018	NM_028820	74211	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.070000	0.661692	
mm_18064.1	chr2	42079535	42079735	-	1	NA	NA	NA	367933	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.000000	0.293532	
mm_90845.1	chr10	8760514	8760714	-	1	NA	NA	NA	125456	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.010000	0.383085	
mm_7647.1	chr1	128299512	128299712	-	1	NA	NA	NA	28706	NM_001081078	226413	Mm.26930	NM_001081078	ENSMUSG00000026354	Lct	Gm100|LAC|LPH|Lphl	lactase	protein-coding	0.010000	0.487562	
mm_117550.1	chr13	84056353	84056553	-	1	NA	NA	NA	8321	NR_131220	553095	Mm.39702	NR_131220	ENSMUSG00000098087	Gm17750	-	predicted gene, 17750	ncRNA	0.010000	0.497512	33(CCCTAAATAGGG,+,0.00)
mm_107328.1	chr12	31735603	31735803	+	1	NA	NA	NA	-21777	NM_175191	73010	Mm.441517	NM_175191	ENSMUSG00000044067	Gpr22	2900068K05Rik|AW061316	G protein-coupled receptor 22	protein-coding	0.005000	0.333333	
mm_53093.1	chr6	125009028	125009228	+	1	NA	NA	NA	-110	NM_001252083	269800	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	0.070000	0.656716	
mm_92121.1	chr10	63338963	63339163	-	1	NA	NA	NA	-28	NM_001159589	93759	Mm.351459	NM_019812	ENSMUSG00000020063	Sirt1	AA673258|SIR2L1|Sir2|Sir2a|Sir2alpha	sirtuin 1	protein-coding	0.145000	0.761194	
mm_13168.1	chr2	92609478	92609678	+	1	NA	NA	NA	9871	NM_023850	76969	Mm.38021	NM_023850	ENSMUSG00000027221	Chst1	2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KSGAL6ST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding	0.000000	0.557214	
mm_58699.1	chr7	12927246	12927446	+	1	NA	NA	NA	-70	NM_029809	381845	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0.025000	0.542289	
mm_79548.1	chr9	57922429	57922629	+	1	NA	NA	NA	11543	NM_001122873	69459	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0.025000	0.621891	
mm_50874.1	chr6	55452176	55452376	+	1	NA	NA	NA	298	NM_007407	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	0.125000	0.721393	
mm_11306.1	chr2	30262983	30263183	+	1	NA	NA	NA	-3120	NM_001252568	227696	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	0.005000	0.442786	-47(GCTTTTAAGGTG,+,0.00)
mm_13442.1	chr2	105127111	105127311	+	1	NA	NA	NA	682	NM_144783	22431	Mm.389339	NM_144783	ENSMUSG00000016458	Wt1	D630046I19Rik|Wt-1	Wilms tumor 1 homolog	protein-coding	0.120000	0.716418	
mm_26482.1	chr3	144691858	144692058	+	1	NA	NA	NA	28377	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.010000	0.452736	
mm_141578.1	chr17	32364321	32364521	-	1	NA	NA	NA	-13844	NM_017476	54194	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	0.175000	0.810945	
mm_162954.1	chr11	4232959	4233159	+	1	NA	NA	NA	-3726	NM_001013365	18413	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.020000	0.532338	
mm_47790.1	chr5	132250713	132250913	-	1	NA	NA	NA	291530	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.020000	0.492537	
mm_51369.1	chr6	72743939	72744139	+	1	NA	NA	NA	45006	NM_001079822	21415	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.000000	0.417910	-49(ATCTTTAAAAGC,-,0.00),-48(TCTTTAAAAGCA,+,0.00)
mm_119301.1	chr14	34709770	34709970	+	1	NA	NA	NA	35942	NM_001301330	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.005000	0.288557	
mm_91968.1	chr10	61416604	61416804	-	1	NA	NA	NA	-1268	NM_013611	18119	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0.015000	0.532338	
mm_8815.1	chr1	161979586	161979786	-	1	NA	NA	NA	-50	NM_001204904	75368	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	0.005000	0.457711	
mm_28589.1	chr3	94412789	94412989	-	1	NA	NA	NA	-429	NM_028307	72634	Mm.331198	NM_028307	ENSMUSG00000041912	Tdrkh	2700091C21Rik|Tdrd2	tudor and KH domain containing protein	protein-coding	0.065000	0.611940	
mm_168226.1	chr10	79960075	79960275	+	1	NA	NA	NA	23	NM_175450	216156	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.070000	0.626866	
mm_22380.1	chr2	181156723	181156923	-	1	NA	NA	NA	192	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.110000	0.691542	
mm_64127.1	chr7	141145029	141145229	+	1	NA	NA	NA	13843	NM_013782	27388	Mm.293591	NM_013782	ENSMUSG00000025495	Ptdss2	AI481134|AI988017|PSS2	phosphatidylserine synthase 2	protein-coding	0.005000	0.482587	76(TGGCATTAAAGG,-,0.00),78(GCATTAAAGGCG,+,0.00)
mm_98276.1	chr11	89016841	89017041	+	1	NA	NA	NA	17538	NM_009546	217069	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.005000	0.507463	
mm_5443.1	chr1	36010902	36011102	-	1	NA	NA	NA	-57398	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.035000	0.587065	
mm_158392.1	chrX	136271342	136271542	-	1	NA	NA	NA	1189	NM_001110234	12070	Mm.90787	NM_009750	ENSMUSG00000046432	Bex3	AL033356|DXWsu67e|Gcap27|Nade|Ngfrap1	brain expressed X-linked 3	protein-coding	0.030000	0.557214	
mm_137260.1	chr17	24632636	24632836	+	1	NA	NA	NA	54	NM_008743	18207	Mm.148315	NM_008743	ENSMUSG00000041429	Nthl1	Nth1|Octs3	nth (endonuclease III)-like 1 (E.coli)	protein-coding	0.095000	0.616915	
mm_51063.1	chr6	65818214	65818414	+	1	NA	NA	NA	39352	NM_029549	70779	Mm.263355	NM_027547	ENSMUSG00000029913	Prdm5	4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2	PR domain containing 5	protein-coding	0.000000	0.437811	
mm_108652.1	chr12	86275706	86275906	+	1	NA	NA	NA	33948	NM_001324488	70373	Mm.252967	NM_027405	ENSMUSG00000021254	Gpatch2l	1700020O03Rik|4732487G21Rik|A630090I05Rik|Kiaa1152	G patch domain containing 2 like	protein-coding	0.000000	0.363184	57(CCCCCTAAAAGT,-,0.00)
mm_82152.1	chr9	123774936	123775136	+	1	NA	NA	NA	7825	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.015000	0.427861	49(CCTTTAAAACAC,+,0.00)
mm_12499.1	chr2	71867657	71867857	+	1	NA	NA	NA	-5467	NM_172665	228026	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.015000	0.467662	
mm_97868.1	chr11	83122183	83122383	+	1	NA	NA	NA	5438	NM_011407	20555	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0.010000	0.512438	
mm_166715.1	chr6	118277421	118277621	-	1	NA	NA	NA	-29067	NR_040527	73531	Mm.396245	NR_040527	ENSMUSG00000107637	1700069P05Rik	-	RIKEN cDNA 1700069P05 gene	ncRNA	0.000000	0.467662	
mm_102957.1	chr11	69664409	69664609	-	1	NA	NA	NA	1466	NR_035455	100316840		NR_035455	ENSMUSG00000088752	Mir1934	mir-1934|mmu-mir-1934	microRNA 1934	ncRNA	0.025000	0.577114	
mm_45992.1	chr5	90504874	90505074	-	1	NA	NA	NA	-13975	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.045000	0.537313	
mm_5237.1	chr1	15892593	15892793	-	1	NA	NA	NA	29	NM_001033288	226866	Mm.131665	NM_001033288	ENSMUSG00000032719	Sbspon	Gm106|Rpesp	somatomedin B and thrombospondin, type 1 domain containing	protein-coding	0.100000	0.731343	
mm_82343.1	chr9	13105755	13105955	-	1	NA	NA	NA	0	NR_040755	78219	Mm.414868	NR_040755	ENSMUSG00000111830	4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA	0.040000	0.517413	-34(GCCTATATAAGG,-,0.00),35(ATGTATTAAAGC,-,0.00)
mm_63826.1	chr7	134800607	134800807	+	1	NA	NA	NA	130020	NM_001033420	330662	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik	dedicator of cytokinesis 1	protein-coding	0.000000	0.278607	
mm_132551.1	chr16	37883536	37883736	+	1	NA	NA	NA	15236	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.020000	0.457711	
mm_80553.1	chr9	83014760	83014960	+	1	NA	NA	NA	-39371	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.015000	0.507463	-86(GCTTTTAGGAGC,+,0.00)
mm_133437.1	chr16	87698956	87699156	+	1	NA	NA	NA	102	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.150000	0.771144	
mm_93549.1	chr10	116113847	116114047	-	1	NA	NA	NA	-30	NM_001161855	619332	Mm.391427	NM_001033821	ENSMUSG00000074734	4933416C03Rik	-	RIKEN cDNA 4933416C03 gene	protein-coding	0.065000	0.681592	
mm_137973.1	chr17	33557682	33557882	+	1	NA	NA	NA	2075	NM_053214	17916	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0.000000	0.467662	
mm_89459.1	chr10	93188097	93188297	+	1	NA	NA	NA	25412	NR_035452	100316689		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	0.000000	0.353234	87(GACTTTTAAAGA,-,0.00),88(ACTTTTAAAGAC,+,0.00)
mm_66465.1	chr7	44929297	44929497	-	1	NA	NA	NA	93	NM_007458	11771	Mm.6877	NM_007458	ENSMUSG00000060279	Ap2a1	Adtaa	adaptor-related protein complex 2, alpha 1 subunit	protein-coding	0.125000	0.746269	
mm_128737.1	chr15	64304861	64305061	-	1	NA	NA	NA	7712	NM_001276462	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.000000	0.402985	
mm_135433.1	chr16	45382811	45383011	-	1	NA	NA	NA	26142	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.005000	0.457711	
mm_11598.1	chr2	33641157	33641357	+	1	NA	NA	NA	64	NR_046275	100504399	Mm.72070	NM_177842		C130021I20Rik	-	Riken cDNA C130021I20 gene	ncRNA	0.075000	0.621891	
mm_52314.1	chr6	108834458	108834658	+	1	NA	NA	NA	5917	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.015000	0.467662	
mm_55775.1	chr6	78468771	78468971	-	1	NA	NA	NA	3	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.000000	0.467662	-33(TACTATAAAAAC,-,0.00)
mm_161336.1	chr14	51095911	51096111	+	1	NA	NA	NA	11	NM_201239	58809	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	0.005000	0.462687	
mm_31235.1	chr4	44664342	44664542	+	1	NA	NA	NA	-38358	NR_073462	70602	Mm.491142	NR_073462	ENSMUSG00000103995	5730488B01Rik	-	RIKEN cDNA 5730488B01 gene	ncRNA	0.155000	0.721393	
mm_128515.1	chr15	53346003	53346203	-	1	NA	NA	NA	80	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.160000	0.706468	
mm_108119.1	chr12	75749995	75750195	+	1	NA	NA	NA	-14366	NM_030750	81535	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.005000	0.417910	
mm_147481.1	chr18	47248036	47248236	-	1	NA	NA	NA	120732	NM_018744	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.030000	0.482587	
mm_49007.1	chr6	4758200	4758400	+	1	NA	NA	NA	10994	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.412935	
mm_127571.1	chr15	102279385	102279585	+	1	NA	NA	NA	29	NM_134100	106073	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0.125000	0.776119	
mm_27921.1	chr3	79532070	79532270	-	1	NA	NA	NA	35509	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.015000	0.512438	-33(CCATTAAGAGGG,+,0.00)
mm_77616.1	chr8	123925770	123925970	-	1	NA	NA	NA	23395	NM_172288	234865	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	0.015000	0.537313	
mm_48137.1	chr5	137150172	137150372	-	1	NA	NA	NA	-34065	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.527363	
mm_37749.1	chr4	129621310	129621510	-	1	NA	NA	NA	-2317	NM_198026	230767	Mm.441132	NM_198026	ENSMUSG00000040795	Iqcc	BC026978	IQ motif containing C	protein-coding	0.025000	0.527363	
mm_156123.1	chrX	116448844	116449044	+	1	NA	NA	NA	0	NM_001033471	382239	Mm.336224	NM_001033471	ENSMUSG00000072995	Cpxcr1	Gm1143	CPX chromosome region, candidate 1	protein-coding	0.000000	0.398010	
mm_54677.1	chr6	39412122	39412322	-	1	NA	NA	NA	7554	NM_001311109	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.010000	0.422886	
mm_24633.1	chr3	94310154	94310354	+	1	NA	NA	NA	122	NM_029431	75778	Mm.45092	NM_029431	ENSMUSG00000028145	Them4	2700077M13Rik|4921507I02Rik	thioesterase superfamily member 4	protein-coding	0.070000	0.616915	
mm_167516.1	chr9	14643513	14643713	+	1	NA	NA	NA	-28613	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.020000	0.512438	
mm_124342.1	chr14	103844252	103844452	-	1	NA	NA	NA	124	NM_001136061	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.050000	0.552239	
mm_165013.1	chr19	28402307	28402507	+	1	NA	NA	NA	-275817	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.010000	0.462687	
mm_18107.1	chr2	44988826	44989026	-	1	NA	NA	NA	34251	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.070000	0.626866	
mm_137153.1	chr17	23681448	23681648	+	1	NA	NA	NA	2183	NM_018777	54419	Mm.86421	NM_018777	ENSMUSG00000023906	Cldn6	AL024037	claudin 6	protein-coding	0.015000	0.616915	
mm_170215.1	chr17	74528747	74528947	+	1	NA	NA	NA	552	NM_007566	12211	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.120000	0.741294	
mm_145366.1	chr18	56732574	56732774	+	1	NA	NA	NA	24861	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.010000	0.482587	-34(AACTATAAAAGA,-,0.00)
mm_90507.1	chr10	128039500	128039700	+	1	NA	NA	NA	4254	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.015000	0.542289	70(GAATCTAAAAGG,-,0.00)
mm_99890.1	chr11	109525228	109525428	+	1	NA	NA	NA	-18383	NM_001166177	74008	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872	arylsulfatase G	protein-coding	0.030000	0.412935	
mm_127742.1	chr15	103308287	103308487	+	1	NA	NA	NA	2051	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.015000	0.512438	59(CTTTAAATAGCT,+,0.00),68(GCTTTAATGGAA,+,0.00)
mm_54272.1	chr6	29026080	29026280	-	1	NA	NA	NA	3561	NR_029567	387237		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	0.005000	0.517413	
mm_53330.1	chr6	129232985	129233185	+	1	NA	NA	NA	4960	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.035000	0.457711	
mm_52550.1	chr6	115944840	115945040	+	1	NA	NA	NA	9	NM_138311	171506	Mm.21899	NM_138311	ENSMUSG00000042279	H1foo	C86609|H1.8|H1fo|H1oo	H1 histone family, member O, oocyte-specific	protein-coding	0.010000	0.547264	-34(AGGTATTTAAGG,-,0.00)
mm_35900.1	chr4	49597359	49597559	-	1	NA	NA	NA	411	NM_025944	67063	Mm.490285	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	0.115000	0.771144	
mm_128191.1	chr15	34983250	34983450	-	1	NA	NA	NA	145301	NM_001271704	16539	Mm.71045	NM_181317	ENSMUSG00000050963	Kcns2	E130006J24Rik|Kv9.2	K+ voltage-gated channel, subfamily S, 2	protein-coding	0.010000	0.462687	
mm_89130.1	chr10	85102643	85102843	+	1	NA	NA	NA	116	NM_001013028	103266	Mm.335025	NM_001013028	ENSMUSG00000060935	Tmem263	AI597468	transmembrane protein 263	protein-coding	0.190000	0.820896	
mm_145219.1	chr18	50053347	50053547	+	1	NA	NA	NA	165	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.115000	0.691542	
mm_129588.1	chr15	79786781	79786981	-	1	NA	NA	NA	-12414	NM_017470	54152	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	0.000000	0.542289	
mm_90086.1	chr10	116914023	116914223	+	1	NA	NA	NA	-17244	NM_001033333	237558	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	0.045000	0.537313	
mm_87654.1	chr10	58446787	58446987	+	1	NA	NA	NA	35	NM_011240	19386	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0.140000	0.741294	
mm_115576.1	chr13	11573209	11573409	-	1	NA	NA	NA	51257	NR_027813	664793	Mm.410565	NR_027813		Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo	0.000000	0.442786	
mm_69800.1	chr7	141172736	141172936	-	1	NA	NA	NA	15	NM_001172100	107702	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.070000	0.611940	
mm_163703.1	chr13	104376955	104377155	+	1	NA	NA	NA	89220	NM_001081020	108154	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.010000	0.308458	
mm_118319.1	chr13	113593617	113593817	-	1	NA	NA	NA	24847	NM_130796	170625	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.025000	0.407960	14(TCTTTTATAGCT,+,0.00)
mm_25503.1	chr3	109524148	109524348	+	1	NA	NA	NA	-49759	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.000000	0.432836	
mm_124955.1	chr15	12918300	12918500	+	1	NA	NA	NA	93585	NM_001130149	14000	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	0.040000	0.532338	
mm_113029.1	chr13	23493725	23493925	+	1	NA	NA	NA	-4968	NM_001289614	238555	Mm.129668	NM_175938	ENSMUSG00000053216	Btn2a2	Btn2|D030063K05	butyrophilin, subfamily 2, member A2	protein-coding	0.005000	0.447761	
mm_78998.1	chr9	45406016	45406216	+	1	NA	NA	NA	39	NM_007503	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.025000	0.562189	
mm_87706.1	chr10	60002507	60002707	+	1	NA	NA	NA	-198	NM_026937	69090	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0.040000	0.522388	
mm_143799.1	chr17	83181531	83181731	-	1	NA	NA	NA	-33652	NM_134117	106522	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.005000	0.452736	-35(AGCTTTATAAAG,-,0.00),-33(CTTTATAAAGGG,+,0.00),-33(CTTTATAAAGGG,-,0.00)
mm_28526.1	chr3	92621081	92621281	-	1	NA	NA	NA	479	NM_001166172	78382	Mm.235474	NM_001166172	ENSMUSG00000086848	Lce6a	2210420J11Rik	late cornified envelope 6A	protein-coding	0.010000	0.442786	
mm_74024.1	chr8	121730022	121730222	+	1	NA	NA	NA	-437	NM_020605	57340	Mm.306870	NM_020605	ENSMUSG00000025318	Jph3	JP-3|Jp3	junctophilin 3	protein-coding	0.205000	0.875622	
mm_13347.1	chr2	102948675	102948875	+	1	NA	NA	NA	-47110	NM_001039150	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.000000	0.462687	
mm_151087.1	chr19	47636336	47636536	+	1	NA	NA	NA	55606	NM_007732	12821	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	0.025000	0.422886	
mm_104166.1	chr11	87358990	87359190	-	1	NA	NA	NA	-96	NM_177167	320472	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	0.145000	0.776119	
mm_150367.1	chr19	34649720	34649920	+	1	NA	NA	NA	8931	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.010000	0.452736	28(GCCTATATATGA,-,0.00)
mm_40537.1	chr5	57963517	57963717	+	1	NA	NA	NA	245536	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.000000	0.363184	-32(TCCTTTTTATGG,-,0.00),-30(CTTTTTATGGAT,+,0.00),-11(GTCTCTTAATGG,-,0.00),-9(CTCTTAATGGCC,+,0.00)
mm_124994.1	chr15	22789569	22789769	+	1	NA	NA	NA	-74685	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding	0.020000	0.412935	45(CCTTTTATATTT,+,0.00)
mm_127837.1	chr15	6853027	6853227	-	1	NA	NA	NA	21186	NM_011019	18414	Mm.10760	NM_011019	ENSMUSG00000022146	Osmr	OSMRB	oncostatin M receptor	protein-coding	0.005000	0.383085	
mm_64816.1	chr7	7277937	7278137	-	1	NA	NA	NA	252	NR_003555	76229	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	0.055000	0.626866	
mm_102677.1	chr11	65261617	65261817	-	1	NA	NA	NA	8272	NM_145136	214384	Mm.32257	NM_145136	ENSMUSG00000020542	Myocd	BSAC2A|Srfcp	myocardin	protein-coding	0.005000	0.422886	
mm_158937.1	chr1	74362306	74362506	+	1	NA	NA	NA	298	NM_001033345	241112	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0.005000	0.517413	
mm_160190.1	chr7	55806285	55806485	+	1	NA	NA	NA	12237	NM_146190	233276	Mm.284306	NM_146190	ENSMUSG00000033790	Tubgcp5	B130010C12Rik|GCP5|mKIAA1899	tubulin, gamma complex associated protein 5	protein-coding	0.010000	0.258706	24(GTTTTTAAAAAG,-,0.00)
mm_10733.1	chr2	22971027	22971227	+	1	NA	NA	NA	69114	NM_001077192	11308	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.025000	0.373134	
mm_51911.1	chr6	91212765	91212965	+	1	NA	NA	NA	101	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.105000	0.656716	
mm_70776.1	chr8	22192764	22192964	+	1	NA	NA	NA	4	NM_027338	70160	Mm.41453	NM_027338	ENSMUSG00000031479	Vps36	1700010A24Rik|2210415M20Rik|2810408E15Rik|Eap45	vacuolar protein sorting 36	protein-coding	0.140000	0.751244	
mm_129958.1	chr15	85156032	85156232	-	1	NA	NA	NA	0	NR_040360	100502602	Mm.390830	NR_040360		Gm19277	-	predicted gene, 19277	ncRNA	0.015000	0.552239	
mm_42760.1	chr5	121204388	121204588	+	1	NA	NA	NA	-13	NM_011290	19988	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	0.045000	0.557214	16(GCTTATAGACCG,+,0.00)
mm_111128.1	chr12	81472170	81472370	-	1	NA	NA	NA	12581	NR_132135	66272	Mm.439970	NM_025461	ENSMUSG00000091803	Cox16	1810020G14Rik|1810055I05Rik|BB388670	cytochrome c oxidase assembly protein 16	protein-coding	0.015000	0.388060	
mm_95071.1	chr11	32610953	32611153	+	1	NA	NA	NA	-31502	NM_001271348	103583	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.005000	0.477612	-96(GTGTCTAAAAGA,-,0.00)
mm_146242.1	chr18	77281560	77281760	+	1	NA	NA	NA	-298	NM_172834	240411	Mm.380247	NM_172834	ENSMUSG00000032818	Loxhd1	1700096C21Rik|4932417K07|sba	lipoxygenase homology domains 1	protein-coding	0.040000	0.557214	
mm_120291.1	chr14	63135524	63135724	+	1	NA	NA	NA	13162	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.035000	0.527363	
mm_120361.1	chr14	64434281	64434481	+	1	NA	NA	NA	6645	NM_001253715	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.005000	0.452736	
mm_32182.1	chr4	100994520	100994720	+	1	NA	NA	NA	-74418	NM_183024	242570	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.010000	0.497512	
mm_123562.1	chr14	66868834	66869034	-	1	NA	NA	NA	84	NM_001034881	432870	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	0.115000	0.731343	
mm_79444.1	chr9	56090250	56090450	+	1	NA	NA	NA	374	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.045000	0.636816	
mm_40488.1	chr5	56896383	56896583	+	1	NA	NA	NA	821436	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	0.010000	0.333333	
mm_5333.1	chr1	23922167	23922367	-	1	NA	NA	NA	114	NM_028534	98366	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	0.195000	0.845771	
mm_56868.1	chr6	118479178	118479378	-	1	NA	NA	NA	-5	NM_011763	22750	Mm.106970	NM_011763	ENSMUSG00000072623	Zfp9	1810048F22Rik|AU016736|Krox-4|Zfp-9|mszf79-2	zinc finger protein 9	protein-coding	0.090000	0.711443	
mm_81512.1	chr9	110034862	110035062	+	1	NA	NA	NA	-17059	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.010000	0.497512	
mm_105885.1	chr11	114930607	114930807	-	1	NA	NA	NA	3679	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.015000	0.457711	
mm_29659.1	chr3	122552240	122552440	-	1	NA	NA	NA	-10659	NR_106117	102465764		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.005000	0.278607	
mm_49437.1	chr6	29313383	29313583	+	1	NA	NA	NA	-5657	NM_001289663	330277	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	0.000000	0.417910	
mm_87918.1	chr10	62504005	62504205	+	1	NA	NA	NA	3650	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.025000	0.542289	
mm_68996.1	chr7	126675489	126675689	-	1	NA	NA	NA	768	NM_133670	20887	Mm.368982	NM_133670	ENSMUSG00000030711	Sult1a1	AI266890|PST|ST1A1|Stp|Stp1	sulfotransferase family 1A, phenol-preferring, member 1	protein-coding	0.015000	0.487562	
mm_105994.1	chr11	115644963	115645163	-	1	NA	NA	NA	-16768	NM_001252395	67283	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.010000	0.338308	
mm_100863.1	chr11	5896652	5896852	-	1	NA	NA	NA	2030	NM_022879	17898	Mm.46514	NM_022879	ENSMUSG00000020469	Myl7	MLC-2alpha|MLC2a|MYL2A|Mylc2a|RLC-A	myosin, light polypeptide 7, regulatory	protein-coding	0.020000	0.537313	
mm_152129.1	chr19	7019234	7019434	-	1	NA	NA	NA	135	NM_153795	108101	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.015000	0.592040	
mm_124585.1	chr15	3251166	3251366	+	1	NA	NA	NA	-19501	NM_001042613	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.000000	0.472637	-33(AGCTATAAAGGG,-,0.00)
mm_31416.1	chr4	48050679	48050879	+	1	NA	NA	NA	-467	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.005000	0.442786	
mm_159290.1	chr2	173578200	173578400	-	1	NA	NA	NA	41	NM_001199955	70065	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	0.155000	0.786070	
mm_22367.1	chr2	181135106	181135306	-	1	NA	NA	NA	83	NM_001006668	16536	Mm.40615	NM_010611	ENSMUSG00000016346	Kcnq2	HNSPC|KQT2|Nmf134	potassium voltage-gated channel, subfamily Q, member 2	protein-coding	0.170000	0.830846	
mm_113590.1	chr13	40918432	40918632	+	1	NA	NA	NA	898	NM_133219	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.030000	0.412935	
mm_15234.1	chr2	154603923	154604123	+	1	NA	NA	NA	-350	NM_021534	59038	Mm.24673	NM_021534	ENSMUSG00000000876	Pxmp4	3010018P03Rik|Pmp24	peroxisomal membrane protein 4	protein-coding	0.025000	0.447761	83(GCTTTAAGACAG,+,0.00)
mm_8033.1	chr1	135160678	135160878	-	1	NA	NA	NA	6903	NM_134438	171469	Mm.272290	NM_134438	ENSMUSG00000026424	Gpr37l1	AW047233|CAG-18|D0Kist8	G protein-coupled receptor 37-like 1	protein-coding	0.030000	0.532338	
mm_64742.1	chr7	4770530	4770730	-	1	NA	NA	NA	640	NM_172895	243822	Mm.333542	NM_172895	ENSMUSG00000092518	Fam71e2	4930401F20Rik	family with sequence similarity 71, member E2	protein-coding	0.025000	0.527363	
mm_107837.1	chr12	69296768	69296968	+	1	NA	NA	NA	187	NM_027117	69554	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0.175000	0.781095	
mm_147228.1	chr18	38209602	38209802	-	1	NA	NA	NA	60	NM_029357	75599	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.050000	0.597015	
mm_166428.1	chr5	137152324	137152524	+	1	NA	NA	NA	-36217	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.472637	
mm_78885.1	chr9	44581620	44581820	+	1	NA	NA	NA	-23172	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.010000	0.537313	
mm_81142.1	chr9	106821908	106822108	+	1	NA	NA	NA	32	NM_001015507	321006	Mm.440089	NM_001015507	ENSMUSG00000040325	Vprbp	AI447437|B930007L02Rik|mKIAA0800	Vpr (HIV-1) binding protein	protein-coding	0.085000	0.626866	
mm_50393.1	chr6	48708246	48708446	+	1	NA	NA	NA	-102	NM_153175	231931	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	0.015000	0.467662	
mm_98382.1	chr11	94137577	94137777	+	1	NA	NA	NA	-73777	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.010000	0.562189	
mm_158586.1	chrX	150814158	150814358	-	1	NA	NA	NA	81	NM_030700	80884	Mm.22575	NM_030700	ENSMUSG00000025268	Maged2	4833439A22Rik|Mage-d2|ORF1	melanoma antigen, family D, 2	protein-coding	0.020000	0.601990	
mm_122402.1	chr14	41004303	41004503	-	1	NA	NA	NA	2517	NM_001316739	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.040000	0.616915	
mm_54573.1	chr6	38096861	38097061	-	1	NA	NA	NA	-12392	NM_029921	77522	Mm.387207	NM_029921	ENSMUSG00000029829	Tmem213	D630002J15Rik	transmembrane protein 213	protein-coding	0.005000	0.606965	
mm_119130.1	chr14	31138920	31139120	+	1	NA	NA	NA	4167	NM_027289	70021	Mm.261681	NM_027289	ENSMUSG00000071547	Nt5dc2	2510015F01Rik	5'-nucleotidase domain containing 2	protein-coding	0.025000	0.567164	
mm_164531.1	chr17	6241115	6241315	-	1	NA	NA	NA	-29255	NM_001033178	77106	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	0.005000	0.447761	
mm_17855.1	chr2	34773970	34774170	-	1	NA	NA	NA	1980	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.010000	0.507463	
mm_140523.1	chr17	6317329	6317529	-	1	NA	NA	NA	45	NM_001166629	100310872	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	0.080000	0.681592	
mm_137562.1	chr17	27702424	27702624	+	1	NA	NA	NA	17285	NM_178365	23969	Mm.4926	NM_011861	ENSMUSG00000040276	Pacsin1	A830061D09Rik|H74|mKIAA1379|syndapin	protein kinase C and casein kinase substrate in neurons 1	protein-coding	0.045000	0.432836	
mm_144037.1	chr17	90143943	90144143	-	1	NA	NA	NA	-55675	NM_001347419	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.000000	0.407960	
mm_72722.1	chr8	85037081	85037281	+	1	NA	NA	NA	13	NM_001122843	212999	Mm.220357	NM_145390	ENSMUSG00000031691	Tnpo2	1110034O24Rik|AA414969|AI464345|AI852433|IPO3|Knpb2b|Kpnb2b|TRN2	transportin 2 (importin 3, karyopherin beta 2b)	protein-coding	0.105000	0.746269	
mm_165080.1	chr19	46558687	46558887	-	1	NA	NA	NA	14298	NM_019718	56350	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	0.040000	0.611940	
mm_75104.1	chr8	34146618	34146818	-	1	NA	NA	NA	21	NM_026609	68192	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	0.150000	0.786070	
mm_123796.1	chr14	70443359	70443559	-	1	NA	NA	NA	12	NM_025945	67065	Mm.20420	NM_025945	ENSMUSG00000000776	Polr3d	2810426M17Rik|44kDa|AI326118|AW489084|BN51T|RPC4|TSBN51	polymerase (RNA) III (DNA directed) polypeptide D	protein-coding	0.095000	0.641791	
mm_14581.1	chr2	135674161	135674361	+	1	NA	NA	NA	-67569	NM_013829	18798	Mm.38009	NM_013829	ENSMUSG00000039943	Plcb4	A930039J07Rik|AI854601|C230058B11Rik	phospholipase C, beta 4	protein-coding	0.005000	0.422886	1(GCCTTTATACCC,+,0.00)
mm_122685.1	chr14	52019581	52019781	-	1	NA	NA	NA	32	NM_001253694	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.055000	0.592040	
mm_18448.1	chr2	60937762	60937962	-	1	NA	NA	NA	25342	NM_020296	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.005000	0.472637	
mm_127020.1	chr15	96285915	96286115	+	1	NA	NA	NA	-1507	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.015000	0.457711	
mm_167927.1	chrX	103466524	103466724	-	1	NA	NA	NA	16609	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.030000	0.482587	
mm_47033.1	chr5	115732389	115732589	-	1	NA	NA	NA	-930	NM_001080808	75665	Mm.233914	NM_001080808	ENSMUSG00000041609	Ccdc64	2210403N09Rik|BICDR-1|Bicdl1	coiled-coil domain containing 64	protein-coding	0.130000	0.766169	
mm_142615.1	chr17	46858385	46858585	-	1	NA	NA	NA	-27072	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.130000	0.646766	
mm_164893.1	chr18	63692368	63692568	+	1	NA	NA	NA	-109	NM_016792	53382	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.115000	0.686567	
mm_70305.1	chr8	4134622	4134822	+	1	NA	NA	NA	-14	NM_027343	70192	Mm.390006	NM_027343	ENSMUSG00000079168	Cd209g	2310066I10Rik|AI481039|SIGNR7	CD209g antigen	protein-coding	0.005000	0.552239	
mm_122165.1	chr14	31417572	31417772	-	1	NA	NA	NA	5	NM_001347585	24056	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.010000	0.547264	
mm_141677.1	chr17	33920385	33920585	-	1	NA	NA	NA	1007	NM_009318	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.080000	0.636816	-68(CCTTAAAAACTA,+,0.00)
mm_144658.1	chr18	34312712	34312912	+	1	NA	NA	NA	-18333	NM_025527	66384	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	0.030000	0.467662	
mm_45169.1	chr5	51479192	51479392	-	1	NA	NA	NA	74629	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.015000	0.442786	
mm_152208.1	chr19	7802093	7802293	-	1	NA	NA	NA	474	NM_146232	236149	Mm.207060	NM_146232	ENSMUSG00000053303	Slc22a26	-	solute carrier family 22 (organic cation transporter), member 26	protein-coding	0.010000	0.447761	
mm_16893.1	chr2	13224261	13224461	-	1	NA	NA	NA	47054	NM_009105	20163	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.015000	0.482587	
mm_88456.1	chr10	77560101	77560301	+	1	NA	NA	NA	-21566	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.035000	0.567164	
mm_75620.1	chr8	64609032	64609232	-	1	NA	NA	NA	83977	NM_013494	12876	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|R74677|fat	carboxypeptidase E	protein-coding	0.055000	0.527363	
mm_93870.1	chr10	123171713	123171913	-	1	NA	NA	NA	25206	NM_027604	14479	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	0.015000	0.383085	
mm_69209.1	chr7	127448969	127449169	-	1	NA	NA	NA	89	NM_175163	71131	Mm.474533	NM_175163	ENSMUSG00000048921	Zfp689	4933416E05Rik|Znf689	zinc finger protein 689	protein-coding	0.065000	0.567164	
mm_133300.1	chr16	77545740	77545940	+	1	NA	NA	NA	-53096	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.005000	0.328358	
mm_23383.1	chr3	55890208	55890408	+	1	NA	NA	NA	43203	NR_033592	71182	Mm.195603	NR_033592	ENSMUSG00000106572	4933417G07Rik	-	SEC13 homolog pseudogene	pseudo	0.010000	0.442786	
mm_91463.1	chr10	34127825	34128025	-	1	NA	NA	NA	47	NM_175449	215900	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik	family with sequence similarity 26, member F	protein-coding	0.030000	0.532338	
mm_164094.1	chr15	10996330	10996530	+	1	NA	NA	NA	-4291	NM_053077	22293	Mm.138278	NM_053077	ENSMUSG00000022243	Slc45a2	Aim-1|Aim1|Dbr|Matp|Oca4|blanc-sale|bls|uw	solute carrier family 45, member 2	protein-coding	0.020000	0.407960	
mm_2253.1	chr1	91083385	91083585	+	1	NA	NA	NA	30041	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.010000	0.338308	
mm_155835.1	chrX	100777156	100777356	+	1	NA	NA	NA	-15	NM_001177780	53310	Mm.4615	NM_016747	ENSMUSG00000000881	Dlg3	Dlgh3|SAP102|mKIAA1232	discs, large homolog 3 (Drosophila)	protein-coding	0.110000	0.731343	
mm_161626.1	chr16	75567591	75567791	-	1	NA	NA	NA	18370	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.010000	0.407960	
mm_128532.1	chr15	54847334	54847534	-	1	NA	NA	NA	72712	NM_015744	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.010000	0.452736	
mm_14576.1	chr2	135659225	135659425	+	1	NA	NA	NA	-76105	NR_015544	320684	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.150000	0.830846	
mm_8746.1	chr1	160287278	160287478	-	1	NA	NA	NA	8594	NR_035448	100316784		NR_035448	ENSMUSG00000089204	Mir1927	mmu-mir-1927	microRNA 1927	ncRNA	0.005000	0.417910	-33(TGCTATTAAAAC,-,0.00)
mm_56730.1	chr6	115676510	115676710	-	1	NA	NA	NA	25	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.130000	0.701493	
mm_93773.1	chr10	120408225	120408425	-	1	NA	NA	NA	18802	NR_040626	320626	Mm.446091	NR_040626	ENSMUSG00000090191	9230105E05Rik	-	RIKEN cDNA 9230105E05 gene	ncRNA	0.015000	0.402985	
mm_86511.1	chr10	7663282	7663482	+	1	NA	NA	NA	11	NR_030698	320642	Mm.398806	NR_030698		A630066F11Rik	-	RIKEN cDNA A630066F11 gene	ncRNA	0.130000	0.731343	
mm_2243.1	chr1	91053883	91054083	+	1	NA	NA	NA	539	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.020000	0.552239	
mm_118486.1	chr14	12189945	12190145	+	1	NA	NA	NA	102	NM_001347593	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.020000	0.532338	
mm_116806.1	chr13	54189956	54190156	-	1	NA	NA	NA	-2073	NM_001010973	15466	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	-	histamine receptor H2	protein-coding	0.045000	0.497512	
mm_84468.1	chr9	66592989	66593189	-	1	NA	NA	NA	26	NM_144937	235441	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.105000	0.706468	
mm_41828.1	chr5	104046969	104047169	+	1	NA	NA	NA	205	NM_028794	74167	Mm.241484	NM_028794	ENSMUSG00000029310	Nudt9	1190002C07Rik|ADPR-PPase|AI462474	nudix (nucleoside diphosphate linked moiety X)-type motif 9	protein-coding	0.140000	0.766169	
mm_88209.1	chr10	70194778	70194978	+	1	NA	NA	NA	-9786	NM_001304739	69563	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Mln	myoregulin	protein-coding	0.020000	0.422886	-11(TTTTTTAAAGAG,+,0.00)
mm_18893.1	chr2	76711635	76711835	-	1	NA	NA	NA	36420	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.522388	
mm_105681.1	chr11	107716352	107716552	-	1	NA	NA	NA	24	NM_007582	12299	Mm.57093	NM_007582	ENSMUSG00000020722	Cacng1	-	calcium channel, voltage-dependent, gamma subunit 1	protein-coding	0.025000	0.601990	
mm_93414.1	chr10	108500359	108500559	-	1	NA	NA	NA	168270	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.005000	0.427861	
mm_71316.1	chr8	43703352	43703552	+	1	NA	NA	NA	-3961	NM_001079931	384814	Mm.491652	NM_001079931		Gm5347	EG384814	predicted gene 5347	protein-coding	0.000000	0.398010	
mm_29974.1	chr3	133545042	133545242	-	1	NA	NA	NA	-752	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.060000	0.532338	
mm_102991.1	chr11	69686631	69686831	-	1	NA	NA	NA	-1177	NM_023517	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.010000	0.547264	
mm_88837.1	chr10	80855206	80855406	+	1	NA	NA	NA	31	NM_175195	73218	Mm.3285	NM_175195	ENSMUSG00000035206	Sppl2b	3110056O03Rik|AW550292|PSL1	signal peptide peptidase like 2B	protein-coding	0.150000	0.726368	
mm_168597.1	chr1	173942385	173942585	-	1	NA	NA	NA	7	NM_001302649	15950	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Mndal	interferon activated gene 203	protein-coding	0.005000	0.427861	
mm_2009.1	chr1	87127499	87127699	+	1	NA	NA	NA	2591	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.090000	0.651741	
mm_139306.1	chr17	48348417	48348617	+	1	NA	NA	NA	2116	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.030000	0.626866	
mm_55282.1	chr6	54473064	54473264	-	1	NA	NA	NA	20281	NM_001167861	330319	Mm.434326	NM_001167860	ENSMUSG00000086040	Wipf3	9030621G03|BQ952480	WAS/WASL interacting protein family, member 3	protein-coding	0.020000	0.557214	
mm_172566.1	chr8	111029674	111029874	+	1	NA	NA	NA	1977	NM_001190786	234733	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	0.015000	0.422886	68(GGCTTTAAATAG,-,0.00),70(CTTTAAATAGCC,+,0.00)
mm_55025.1	chr6	48841344	48841544	-	1	NA	NA	NA	-39	NM_025326	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.010000	0.616915	29(GCCCCTTTAGGG,-,0.00),31(CCCTTTAGGGGT,+,0.00)
mm_70719.1	chr8	15519814	15520014	+	1	NA	NA	NA	462261	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.085000	0.512438	
mm_57650.1	chr6	128438500	128438700	-	1	NA	NA	NA	31	NM_010219	14228	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	59kDa|AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	0.180000	0.771144	
mm_33232.1	chr4	126968332	126968532	+	1	NA	NA	NA	-509	NM_001114399	67785	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0.010000	0.472637	-77(CTCCCTTAAAGG,-,0.00),-76(TCCCTTAAAGGG,-,0.00),-75(CCCTTAAAGGGA,+,0.00),-74(CCTTAAAGGGAC,+,0.00)
mm_133796.1	chr16	95278463	95278663	+	1	NA	NA	NA	21005	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.010000	0.497512	
mm_104496.1	chr11	95842060	95842260	-	1	NA	NA	NA	-135	NM_023121	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.040000	0.646766	
mm_168681.1	chr11	95414243	95414443	+	1	NA	NA	NA	260	NM_025287	20747	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0.065000	0.562189	
mm_137579.1	chr17	27978978	27979178	+	1	NA	NA	NA	69772	NM_181413	224650	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.005000	0.601990	
mm_164746.1	chr17	73952193	73952393	-	1	NA	NA	NA	-2097	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.005000	0.512438	
mm_46457.1	chr5	105117913	105118113	-	1	NA	NA	NA	-7721	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.000000	0.432836	
mm_114452.1	chr13	66989198	66989398	+	1	NA	NA	NA	43107	NR_045851	71226	Mm.399574	NR_045851		4933433G19Rik	-	RIKEN cDNA 4933433G19 gene	ncRNA	0.000000	0.378109	
mm_162139.1	chrX	73950451	73950651	-	1	NA	NA	NA	15806	NM_008224	15161	Mm.491126	NM_008224	ENSMUSG00000031386	Hcfc1	AW060991|HCF|HCF1	host cell factor C1	protein-coding	0.010000	0.547264	
mm_9475.1	chr1	173336715	173336915	-	1	NA	NA	NA	-3312	NM_010045	13349	Mm.6393	NM_010045	ENSMUSG00000037872	Ackr1	AA162249|CCBP1|CD234|Darc|Dfy|ESTM35|FY|GPD	atypical chemokine receptor 1 (Duffy blood group)	protein-coding	0.030000	0.572139	
mm_148852.1	chr19	6389448	6389648	+	1	NA	NA	NA	5140	NM_011224	19309	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0.045000	0.597015	
mm_56732.1	chr6	115685374	115685574	-	1	NA	NA	NA	-8839	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.025000	0.512438	
mm_132069.1	chr16	30064341	30064541	+	1	NA	NA	NA	-916	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hairy and enhancer of split 1 (Drosophila)	protein-coding	0.115000	0.706468	-33(AGCTCTTAAAGG,-,0.00),-32(GCTCTTAAAGGG,+,0.00),-32(GCTCTTAAAGGG,-,0.00),-31(CTCTTAAAGGGC,+,0.00)
mm_119932.1	chr14	54970100	54970300	+	1	NA	NA	NA	1413	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.010000	0.522388	
mm_103130.1	chr11	70230129	70230329	-	1	NA	NA	NA	-431	NM_007528	12029	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	0.020000	0.502488	-32(CCTTTTCTGGAC,+,0.00)
mm_145221.1	chr18	50053443	50053643	+	1	NA	NA	NA	261	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.110000	0.706468	
mm_16240.1	chr2	173156296	173156496	+	1	NA	NA	NA	3323	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.015000	0.497512	
mm_171367.1	chr4	118943347	118943547	-	1	NA	NA	NA	-8607	NM_146399	258394	Mm.434316	NM_146399	ENSMUSG00000111259	Olfr1328	MOR259-1|MOR259-13|Olfr1519	olfactory receptor 1328	protein-coding	0.035000	0.557214	
mm_102467.1	chr11	59964844	59965044	-	1	NA	NA	NA	0	NM_009026	19416	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding	0.080000	0.656716	
mm_46592.1	chr5	107725398	107725598	-	1	NA	NA	NA	307	NM_001267621	14581	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.085000	0.696517	
mm_135605.1	chr16	52147406	52147606	-	1	NA	NA	NA	115957	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.025000	0.512438	
mm_87311.1	chr10	42761536	42761736	+	1	NA	NA	NA	140	NM_153055	140740	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0.200000	0.810945	
mm_62382.1	chr7	100816060	100816260	+	1	NA	NA	NA	47253	NM_177073	320100	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.005000	0.457711	
mm_113918.1	chr13	49544531	49544731	+	1	NA	NA	NA	188	NM_025711	66695	Mm.383216	NM_025711	ENSMUSG00000021388	Aspn	4631401G09Rik|AA986886|Plap1|Slrr1c	asporin	protein-coding	0.000000	0.378109	
mm_77145.1	chr8	111561956	111562156	-	1	NA	NA	NA	23713	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.015000	0.522388	-35(GTCCTTAAAAGG,-,0.00),-33(CCTTAAAAGGAG,+,0.00)
mm_89528.1	chr10	94476516	94476716	+	1	NA	NA	NA	-38241	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.015000	0.457711	-17(TTTTATATAGTG,+,0.00)
mm_80585.1	chr9	84652609	84652809	+	1	NA	NA	NA	-121689	NR_040739	75253	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	0.000000	0.472637	
mm_164536.1	chr17	6741146	6741346	-	1	NA	NA	NA	35416	NM_183368	83672	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0.015000	0.562189	
mm_99253.1	chr11	101120066	101120266	+	1	NA	NA	NA	35	NM_134024	103733	Mm.479145	NM_134024	ENSMUSG00000035198	Tubg1	1500010O08Rik|AI451582|AI503389|Tubg	tubulin, gamma 1	protein-coding	0.095000	0.626866	
mm_120089.1	chr14	57826294	57826494	+	1	NA	NA	NA	155	NM_026401	67840	Mm.319530	NM_026401	ENSMUSG00000021967	Mrpl57	2610025P17Rik|AV005697|Mrp63	mitochondrial ribosomal protein L57	protein-coding	0.125000	0.701493	
mm_127930.1	chr15	10470468	10470668	-	1	NA	NA	NA	-52	NM_030046	78244	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	0.185000	0.860697	
mm_96920.1	chr11	70497724	70497924	+	1	NA	NA	NA	-7450	NM_029360	75604	Mm.24400	NM_029360	ENSMUSG00000018919	Tm4sf5	2010003F10Rik|AI323987	transmembrane 4 superfamily member 5	protein-coding	0.035000	0.422886	
mm_81668.1	chr9	111025026	111025226	+	1	NA	NA	NA	5834	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.005000	0.542289	
mm_84673.1	chr9	72034891	72035091	-	1	NA	NA	NA	71550	NR_029879	723889		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.000000	0.328358	
mm_111277.1	chr12	85344355	85344555	-	1	NA	NA	NA	-5093	NM_145138	217718	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.005000	0.492537	
mm_81946.1	chr9	120492582	120492782	+	1	NA	NA	NA	76	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.160000	0.711443	
mm_12169.1	chr2	62610439	62610639	+	1	NA	NA	NA	35716	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.010000	0.437811	
mm_2803.1	chr1	130851649	130851849	+	1	NA	NA	NA	-14028	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.000000	0.467662	
mm_84382.1	chr9	65422741	65422941	-	1	NA	NA	NA	-68	NM_178933	330962	Mm.335247	NM_178933	ENSMUSG00000053862	Slc51b	Ostb	solute carrier family 51, beta subunit	protein-coding	0.010000	0.562189	
mm_41742.1	chr5	102768710	102768910	+	1	NA	NA	NA	0	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.025000	0.537313	
mm_6597.1	chr1	75316864	75317064	-	1	NA	NA	NA	53	NM_016878	13437	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	0.045000	0.567164	
mm_65738.1	chr7	28392598	28392798	-	1	NA	NA	NA	-8	NM_026042	67224	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0.055000	0.557214	
mm_155785.1	chrX	96456396	96456596	+	1	NA	NA	NA	150	NM_001159627	15203	Mm.277092	NM_010417	ENSMUSG00000031209	Heph	C130006F04Rik|Cpl|mKIAA0698|sla	hephaestin	protein-coding	0.015000	0.517413	
mm_109387.1	chr12	109738798	109738998	+	1	NA	NA	NA	-221	NR_030437	751524		NR_030437	ENSMUSG00000070136	Mir496a	Mir496|Mirn496|mir-496a|mmu-mir-496|mmu-mir-496a	microRNA 496a	ncRNA	0.010000	0.517413	
mm_28223.1	chr3	88452285	88452485	-	1	NA	NA	NA	3376	NM_013658	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.005000	0.492537	-86(GCTTCTTTAAGG,-,0.00)
mm_10145.1	chr2	4300453	4300653	+	1	NA	NA	NA	-100423	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.040000	0.562189	
mm_166510.1	chr6	8728905	8729105	-	1	NA	NA	NA	29453	NM_001252266	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.080000	0.557214	
mm_63354.1	chr7	126976515	126976715	+	1	NA	NA	NA	701	NM_001347656	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.060000	0.686567	
mm_117542.1	chr13	83721052	83721252	-	1	NA	NA	NA	-6954	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.075000	0.686567	
mm_51904.1	chr6	91156653	91156853	+	1	NA	NA	NA	-62	NM_144919	232232	Mm.206218	NM_144919	ENSMUSG00000034245	Hdac11	-	histone deacetylase 11	protein-coding	0.075000	0.696517	
mm_31784.1	chr4	63634314	63634514	+	1	NA	NA	NA	-11985	NM_029324	75524	Mm.38543	NM_029324	ENSMUSG00000058935	1700018C11Rik	bM230C2.3	RIKEN cDNA 1700018C11 gene	protein-coding	0.000000	0.402985	
mm_5746.1	chr1	45927877	45928077	-	1	NA	NA	NA	-2383	NM_016917	53945	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.005000	0.477612	
mm_16085.1	chr2	168670417	168670617	+	1	NA	NA	NA	-29758	NR_105971	102466784		NR_105971	ENSMUSG00000105496	Mir7004	mmu-mir-7004	microRNA 7004	ncRNA	0.035000	0.572139	
mm_129576.1	chr15	79735877	79736077	-	1	NA	NA	NA	6559	NM_194342	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.015000	0.532338	
mm_109773.1	chr12	118847478	118847678	+	1	NA	NA	NA	1249	NM_177082	320145	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.050000	0.537313	
mm_12328.1	chr2	69394394	69394594	+	1	NA	NA	NA	14032	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.025000	0.462687	
mm_156377.1	chrX	139671918	139672118	+	1	NA	NA	NA	-12978	NM_001081499	245638	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	0.015000	0.348259	
mm_131187.1	chr16	7217631	7217831	+	1	NA	NA	NA	147896	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.015000	0.552239	
mm_104968.1	chr11	100203095	100203295	-	1	NA	NA	NA	2835	NM_001313957	16664	Mm.439898	NM_016958	ENSMUSG00000045545	Krt14	AI626930|CK-14|K14|Krt-1.14|Krt1-14	keratin 14	protein-coding	0.010000	0.507463	-44(GTCCCTATAGGC,-,0.00)
mm_92632.1	chr10	80323676	80323876	-	1	NA	NA	NA	-3228	NM_025521	66374	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.090000	0.761194	
mm_10356.1	chr2	11690066	11690266	+	1	NA	NA	NA	-15127	NM_001271498	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.005000	0.427861	
mm_171326.1	chr3	96486621	96486821	-	1	NA	NA	NA	-34415	NM_001256180	329716	Mm.275223	NM_183223	ENSMUSG00000046317	BC107364	D730018G16	cDNA sequence BC107364	protein-coding	0.075000	0.631841	
mm_131868.1	chr16	23175085	23175285	+	1	NA	NA	NA	28649	NM_009605	11450	Mm.3969	NM_009605	ENSMUSG00000022878	Adipoq	30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1	adiponectin, C1Q and collagen domain containing	protein-coding	0.015000	0.407960	
mm_159708.1	chr5	30461682	30461882	-	1	NA	NA	NA	150	NM_001286421	83762	Mm.244502	NM_031875	ENSMUSG00000062372	Otof	-	otoferlin	protein-coding	0.030000	0.592040	
mm_92725.1	chr10	80818416	80818616	-	1	NA	NA	NA	-5018	NM_028001	71912	Mm.45137	NM_028001	ENSMUSG00000020216	Jsrp1	2300003C06Rik|2310032K21Rik|JP-45|JP45	junctional sarcoplasmic reticulum protein 1	protein-coding	0.010000	0.537313	
mm_167630.1	chr9	62026756	62026956	-	1	NA	NA	NA	-66	NM_028748	74090	Mm.273267	NM_028748	ENSMUSG00000032278	Paqr5	0610010I15Rik|AV002411|BB115488|mPRg	progestin and adipoQ receptor family member V	protein-coding	0.085000	0.751244	
mm_24870.1	chr3	95951237	95951437	+	1	NA	NA	NA	22080	NM_023210	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.065000	0.567164	
mm_94096.1	chr10	128549012	128549212	-	1	NA	NA	NA	56	NM_018860	67945	Mm.290786	NM_018860	ENSMUSG00000093674	Rpl41	1810055P16Rik|2210411K19Rik	ribosomal protein L41	protein-coding	0.090000	0.587065	
mm_149502.1	chr19	11921328	11921528	+	1	NA	NA	NA	-2300	NR_105960	102465601		NR_105960	ENSMUSG00000104979	Mir6994	mmu-mir-6994	microRNA 6994	ncRNA	0.025000	0.492537	
mm_5139.1	chr1	9725832	9726032	-	1	NA	NA	NA	-21716	NR_040462	73331	Mm.460470	NR_040462		1700034P13Rik	-	RIKEN cDNA 1700034P13 gene	ncRNA	0.000000	0.243781	
mm_10259.1	chr2	9368970	9369170	+	1	NA	NA	NA	179555	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.010000	0.477612	
mm_107937.1	chr12	71832385	71832585	+	1	NA	NA	NA	1417	NM_172464	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.040000	0.552239	
mm_101270.1	chr11	21370369	21370569	-	1	NA	NA	NA	160	NM_139297	216558	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0.060000	0.537313	
mm_136823.1	chr17	12466748	12466948	+	1	NA	NA	NA	4	NR_077217	77414	Mm.417145	NR_077216		C030013G03Rik	-	RIKEN cDNA C030013G03 gene	ncRNA	0.010000	0.487562	-37(GACTATATAAAG,-,0.00)
mm_40240.1	chr5	37735521	37735721	+	1	NA	NA	NA	102	NM_001081106	231162	Mm.76407	NM_001081106	ENSMUSG00000062329	Cytl1	4930443F05Rik|4Cytl1|C17|Cyt1|Gm147	cytokine-like 1	protein-coding	0.020000	0.597015	
mm_4197.1	chr1	171226071	171226271	+	1	NA	NA	NA	1117	NM_013474	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.020000	0.522388	
mm_36132.1	chr4	59331637	59331837	-	1	NA	NA	NA	71686	NR_105031	101055769	Mm.421401	NR_105031		Gm12596	OTTMUSG00000007649	predicted gene 12596	ncRNA	0.025000	0.611940	
mm_130634.1	chr15	100425002	100425202	-	1	NA	NA	NA	1909	NR_040351	432982	Mm.234608	NM_001034883	ENSMUSG00000087444	Gm5475	EG432982	predicted gene 5475	ncRNA	0.010000	0.477612	
mm_107679.1	chr12	54343656	54343856	+	1	NA	NA	NA	47562	NR_033689	665239	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.020000	0.407960	
mm_47550.1	chr5	124352180	124352380	-	1	NA	NA	NA	2348	NM_013812	13445	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0.040000	0.666667	
mm_159221.1	chr2	127656710	127656910	-	1	NA	NA	NA	-115	NM_001171187	17153	Mm.39040	NM_010762	ENSMUSG00000027375	Mal	Mpv17|Vip17	myelin and lymphocyte protein, T cell differentiation protein	protein-coding	0.030000	0.537313	
mm_51291.1	chr6	72305775	72305975	+	1	NA	NA	NA	1265	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.020000	0.542289	
mm_167768.1	chr9	110880013	110880213	-	1	NA	NA	NA	-30	NM_146260	20776	Mm.390229	NM_146260	ENSMUSG00000049555	Tmie	5131400L21Rik|Mm.87012|sr	transmembrane inner ear	protein-coding	0.125000	0.731343	
mm_136605.1	chr17	5227798	5227998	+	1	NA	NA	NA	190869	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.020000	0.318408	25(CTTTTTTAAAGG,-,0.00),26(TTTTTTAAAGGT,+,0.00)
mm_2240.1	chr1	91053427	91053627	+	1	NA	NA	NA	83	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.085000	0.661692	
mm_29612.1	chr3	121263231	121263431	-	1	NA	NA	NA	-15	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0.050000	0.522388	48(GGGCATATAAGA,-,0.00)
mm_7304.1	chr1	97977156	97977356	-	1	NA	NA	NA	70537	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA	0.050000	0.532338	
mm_39236.1	chr4	156255236	156255436	-	1	NA	NA	NA	2	NM_001110516	231004	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	0.040000	0.592040	
mm_153342.1	chr19	38809870	38810070	-	1	NA	NA	NA	9267	NM_021315	57753	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	0.000000	0.368159	89(GGGTTTAAAAAC,-,0.00)
mm_139926.1	chr17	71019413	71019613	+	1	NA	NA	NA	-44	NM_010867	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.005000	0.537313	-57(GGCCATAAAAGG,-,0.00)
mm_101348.1	chr11	23645956	23646156	-	1	NA	NA	NA	-12425	NM_027860	71675	Mm.48031	NM_027860	ENSMUSG00000042208	0610010F05Rik	Kiaa1841|mKIAA1841	RIKEN cDNA 0610010F05 gene	protein-coding	0.005000	0.303483	
mm_160281.1	chr7	122970281	122970481	+	1	NA	NA	NA	78	NR_045614	73951	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.150000	0.791045	
mm_18642.1	chr2	69491426	69491626	-	1	NA	NA	NA	94541	NM_001081088	14725	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	0.010000	0.368159	
mm_66364.1	chr7	43533006	43533206	-	1	NA	NA	NA	65	NM_001111058	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.025000	0.542289	
mm_90249.1	chr10	121586130	121586330	+	1	NA	NA	NA	564	NM_019786	56480	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.045000	0.517413	
mm_170192.1	chr17	6601673	6601873	+	1	NA	NA	NA	-6	NM_001166630	100040563	Mm.457381	NM_001166630	ENSMUSG00000000579	Dynlt1c	100040603|Dynlt1d	dynein light chain Tctex-type 1C	protein-coding	0.095000	0.661692	
mm_122306.1	chr14	35811882	35812082	-	1	NA	NA	NA	-4	NM_001033766	239036	Mm.239970	NM_001033766	ENSMUSG00000041068	4930596D02Rik	-	RIKEN cDNA 4930596D02 gene	protein-coding	0.015000	0.512438	
mm_40672.1	chr5	65536744	65536944	+	1	NA	NA	NA	-401	NM_016786	53323	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.045000	0.517413	
mm_162952.1	chr11	3529904	3530104	+	1	NA	NA	NA	9288	NM_013870	29856	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.015000	0.631841	
mm_145030.1	chr18	39291336	39291536	+	1	NA	NA	NA	195809	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.000000	0.452736	-35(TCCCATAAAAAC,-,0.00),28(CCTTTTAAATTG,+,0.00)
mm_166432.1	chr5	137179965	137180165	-	1	NA	NA	NA	-63858	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.015000	0.477612	
mm_69365.1	chr7	130547272	130547472	-	1	NA	NA	NA	9	NM_001162855	67872	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0.115000	0.661692	
mm_169158.1	chr13	65313616	65313816	+	1	NA	NA	NA	34862	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.000000	0.393035	
mm_45960.1	chr5	90464069	90464269	-	1	NA	NA	NA	3299	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.467662	
mm_26865.1	chr3	16006253	16006453	-	1	NA	NA	NA	-21	NM_001081687	381484	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0.005000	0.437811	
mm_151395.1	chr19	56441098	56441298	+	1	NA	NA	NA	-20439	NM_001164263	226245	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	0.020000	0.353234	
mm_3795.1	chr1	157412638	157412838	+	1	NA	NA	NA	-143	NM_177644	226525	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	0.085000	0.601990	
mm_61319.1	chr7	68148489	68148689	+	1	NA	NA	NA	115644	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.025000	0.517413	
mm_137774.1	chr17	29491632	29491832	+	1	NA	NA	NA	687	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.080000	0.587065	
mm_161023.1	chr11	121630996	121631196	-	1	NA	NA	NA	42055	NM_178664	210004	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0.020000	0.462687	
mm_173349.1	chrY	90813174	90813374	+	1	NA	NA	NA	26132	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.462687	
mm_5689.1	chr1	43183827	43184027	-	1	NA	NA	NA	12834	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.005000	0.497512	
mm_95675.1	chr11	54100939	54101139	+	1	NA	NA	NA	115	NM_011031	18452	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.155000	0.756219	
mm_88726.1	chr10	80179412	80179612	+	1	NA	NA	NA	30	NM_007909	13637	Mm.1478	NM_007909	ENSMUSG00000003070	Efna2	CEK7L|Elf1|Epl6|Eplg6|Lerk6	ephrin A2	protein-coding	0.180000	0.825871	
mm_87594.1	chr10	57631953	57632153	+	1	NA	NA	NA	72	NM_001039051	18768	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.075000	0.711443	
mm_31697.1	chr4	62409746	62409946	+	1	NA	NA	NA	1063	NM_027297	70052	Mm.30660	NM_027297	ENSMUSG00000066148	Prpf4	1600015H11Rik|AI874830|AW047464|bN189G18.1	pre-mRNA processing factor 4	protein-coding	0.010000	0.477612	
mm_67285.1	chr7	78627902	78628102	-	1	NA	NA	NA	-50164	NM_182809	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	0.010000	0.358209	
mm_11356.1	chr2	30913377	30913577	+	1	NA	NA	NA	-10180	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.020000	0.582090	
mm_20645.1	chr2	132029711	132029911	-	1	NA	NA	NA	177	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.110000	0.736318	
mm_33245.1	chr4	127035007	127035207	+	1	NA	NA	NA	13806	NM_023603	71514	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|OTTMUSG00000009329|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.015000	0.442786	
mm_95893.1	chr11	58183792	58183992	+	1	NA	NA	NA	49	NM_001135115	631323	Mm.394103	NM_001135115		Gm12250	Irgb10|OTTMUSG00000005723	predicted gene 12250	protein-coding	0.010000	0.477612	17(CTCTTTATACAC,+,0.00)
mm_89852.1	chr10	107271778	107271978	+	1	NA	NA	NA	47	NM_001033223	108030	Mm.268025	NM_001033223	ENSMUSG00000019906	Lin7a	AI848705|LIN-7A|MALS-1|TIP-33|Veli|Veli1	lin-7 homolog A (C. elegans)	protein-coding	0.055000	0.616915	
mm_171758.1	chr5	105093643	105093843	-	1	NA	NA	NA	16549	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.030000	0.492537	
mm_20128.1	chr2	121301182	121301382	-	1	NA	NA	NA	5828	NM_001173506	17754	Mm.36501	NM_032393	ENSMUSG00000027254	Map1a	6330416M19Rik|AI853608|Mtap-1|Mtap1|Mtap1a|moth1	microtubule-associated protein 1 A	protein-coding	0.015000	0.522388	
mm_8906.1	chr1	163312478	163312678	-	1	NA	NA	NA	1072	NM_011127	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.075000	0.661692	
mm_153832.1	chr19	46324613	46324813	-	1	NA	NA	NA	2153	NM_001347454	73728	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.035000	0.616915	
mm_158297.1	chrX	114981289	114981489	-	1	NA	NA	NA	54400	NR_130989	78086		NR_130989	ENSMUSG00000085619	4930555B12Rik	-	RIKEN cDNA 4930555B12 gene	ncRNA	0.030000	0.407960	
mm_15593.1	chr2	160583298	160583498	+	1	NA	NA	NA	-62499	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.040000	0.532338	-32(GTGTATATAAGC,-,0.00)
mm_53743.1	chr6	145163028	145163228	+	1	NA	NA	NA	41389	NM_008511	16970	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.010000	0.313433	
mm_34708.1	chr4	152115958	152116158	+	1	NA	NA	NA	124	NM_001291010	85030	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0.070000	0.676617	
mm_68596.1	chr7	116093216	116093416	-	1	NA	NA	NA	-64	NM_019772	56372	Mm.24231	NM_019772	ENSMUSG00000030663	1110004F10Rik	Smacp|Smap|sid2057|sid2057p	RIKEN cDNA 1110004F10 gene	protein-coding	0.070000	0.601990	
mm_136766.1	chr17	8849888	8850088	+	1	NA	NA	NA	3	NM_001347321	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.015000	0.567164	
mm_47436.1	chr5	123181353	123181553	-	1	NA	NA	NA	1233	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.020000	0.557214	
mm_150289.1	chr19	34492728	34492928	+	1	NA	NA	NA	-17693	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.010000	0.393035	15(GCTTTTCAAGAG,+,0.00)
mm_74732.1	chr8	18334220	18334420	-	1	NA	NA	NA	-260853	NM_173189	244329	Mm.235296	NM_173189	ENSMUSG00000039842	Mcph1	5430437K10Rik|BRIT1|D030046N04Rik|MCT	microcephaly, primary autosomal recessive 1	protein-coding	0.000000	0.477612	73(CTCTCTTTAAGC,-,0.00)
mm_129054.1	chr15	75566486	75566686	-	1	NA	NA	NA	62	NM_001135689	23934	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	0.095000	0.726368	
mm_81836.1	chr9	118478720	118478920	+	1	NA	NA	NA	631	NM_010136	13813	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	0.100000	0.731343	
mm_548.1	chr1	38019004	38019204	+	1	NA	NA	NA	21094	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.030000	0.427861	
mm_45778.1	chr5	87127757	87127957	-	1	NA	NA	NA	12483	NM_009467	22238	Mm.291575	NM_009467	ENSMUSG00000054630	Ugt2b5	AI118071|M-1|Udpgt-3|Udpgt2b5|Ugt2b17	UDP glucuronosyltransferase 2 family, polypeptide B5	protein-coding	0.015000	0.427861	
mm_134972.1	chr16	32019396	32019596	-	1	NA	NA	NA	-16209	NM_177103	320213	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	0.000000	0.298507	
mm_121526.1	chr14	122155247	122155447	+	1	NA	NA	NA	-26347	NM_029556	69634	Mm.34608	NM_029556	ENSMUSG00000025545	Clybl	0610033J05Rik|2310014M14Rik|AI256068|Clb	citrate lyase beta like	protein-coding	0.035000	0.512438	
mm_39179.1	chr4	155784845	155785045	-	1	NA	NA	NA	929	NM_001033394	320587	Mm.384382	NM_001033394	ENSMUSG00000073680	Tmem88b	A230069A22Rik	transmembrane protein 88B	protein-coding	0.015000	0.542289	
mm_6827.1	chr1	84200458	84200658	-	1	NA	NA	NA	18403	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.363184	
mm_3984.1	chr1	164275596	164275796	+	1	NA	NA	NA	98	NM_029115	74895	Mm.167258	NM_029115	ENSMUSG00000026578	Ccdc181	4930455F23Rik|AI427889	coiled-coil domain containing 181	protein-coding	0.050000	0.636816	
mm_143829.1	chr17	84025885	84026085	-	1	NA	NA	NA	27433	NR_130994	78148	Mm.243918	NR_130994		8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.025000	0.567164	0(GGGCTGAAAAGG,-,0.00)
mm_134449.1	chr16	18347951	18348151	-	1	NA	NA	NA	-131	NM_033474	11877	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velo-cardio-facial syndrome	protein-coding	0.040000	0.621891	
mm_139443.1	chr17	55445282	55445482	+	1	NA	NA	NA	0	NM_001347403	240119	Mm.311687	NM_172829	ENSMUSG00000024172	St6gal2	C230064G14Rik|St6galII|mKIAA1877	beta galactoside alpha 2,6 sialyltransferase 2	protein-coding	0.050000	0.611940	
mm_145834.1	chr18	65442236	65442436	+	1	NA	NA	NA	11339	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.010000	0.462687	
mm_30978.1	chr4	34614868	34615068	+	1	NA	NA	NA	10	NM_181406	109093	Mm.22363	NM_181406	ENSMUSG00000028292	Rars2	1500002I10Rik|PRO1992|Rarsl	arginyl-tRNA synthetase 2, mitochondrial	protein-coding	0.120000	0.701493	
mm_79159.1	chr9	47810002	47810202	+	1	NA	NA	NA	8106	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.035000	0.497512	
mm_97104.1	chr11	73662904	73663104	+	1	NA	NA	NA	-25774	NM_001126489	76390	Mm.267142	NM_001126489	ENSMUSG00000060630	Zfp735	1700012C15Rik	zinc finger protein 735	protein-coding	0.005000	0.348259	
mm_29678.1	chr3	122924024	122924224	-	1	NA	NA	NA	-8	NR_046036	74057	Mm.159123	NR_046036	ENSMUSG00000097852	4933405D12Rik	-	RIKEN cDNA 4933405D12 gene	ncRNA	0.075000	0.661692	
mm_26501.1	chr3	145758580	145758780	+	1	NA	NA	NA	-12	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.125000	0.736318	
mm_100847.1	chr11	5788296	5788496	-	1	NA	NA	NA	-87	NM_001146309	13169	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0.095000	0.656716	
mm_141486.1	chr17	31265773	31265973	-	1	NA	NA	NA	11483	NM_025290	22092	Mm.12743	NM_025290	ENSMUSG00000024033	Rsph1	MCA|Tsga2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding	0.040000	0.572139	
mm_126296.1	chr15	79348042	79348242	+	1	NA	NA	NA	81	NM_001304831	17133	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.070000	0.592040	
mm_97505.1	chr11	78465616	78465816	+	1	NA	NA	NA	15	NM_026740	52466	Mm.131618	NM_026740	ENSMUSG00000020829	Slc46a1	1110002C08Rik|D11Ertd18e|HCP1|Pcft	solute carrier family 46, member 1	protein-coding	0.075000	0.641791	
mm_2455.1	chr1	101487563	101487763	+	1	NA	NA	NA	331895	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0.000000	0.343284	
mm_10523.1	chr2	16384530	16384730	+	1	NA	NA	NA	28326	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.015000	0.303483	
mm_38728.1	chr4	145236987	145237187	-	1	NA	NA	NA	9783	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.010000	0.417910	
mm_118372.1	chr13	116923831	116924031	-	1	NA	NA	NA	101585	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.015000	0.442786	
mm_14269.1	chr2	128704710	128704910	+	1	NA	NA	NA	5813	NM_008587	17289	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.015000	0.437811	-32(GGCTTTTTAAGT,-,0.00)
mm_171980.1	chr5	89690089	89690289	-	1	NA	NA	NA	73753	NR_037571	631105	Mm.7732	NR_037571		Gm7056	Gm149	predicted gene 7056	ncRNA	0.020000	0.358209	
mm_46781.1	chr5	112522488	112522688	-	1	NA	NA	NA	54610	NM_001253917	56747	Mm.143742	NM_019982	ENSMUSG00000058153	Sez6l	AI843918|AIG1|AW539724|Acig1|BSRP-B|mKIAA0927	seizure related 6 homolog like	protein-coding	0.005000	0.437811	
mm_4386.1	chr1	172219390	172219590	+	1	NA	NA	NA	405	NM_009813	12372	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.040000	0.537313	
mm_26481.1	chr3	144689419	144689619	+	1	NA	NA	NA	30816	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.025000	0.577114	
mm_54782.1	chr6	41544174	41544374	-	1	NA	NA	NA	22498	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.015000	0.442786	
mm_59697.1	chr7	28543898	28544098	+	1	NA	NA	NA	3113	NM_026716	68416	Mm.25210	NM_026716	ENSMUSG00000084174	Sycn	0910001K16Rik|1810038B08Rik|SYL	syncollin	protein-coding	0.015000	0.547264	
mm_144855.1	chr18	36665234	36665434	+	1	NA	NA	NA	1274	NM_201256	108112	Mm.24790	NM_201256	ENSMUSG00000090264	Eif4ebp3	4e-bp3	eukaryotic translation initiation factor 4E binding protein 3	protein-coding	0.015000	0.537313	
mm_47925.1	chr5	135012718	135012918	-	1	NA	NA	NA	339	NR_026688	69812	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0.015000	0.597015	
mm_115437.1	chr13	117602217	117602417	+	1	NA	NA	NA	-3	NM_010408	15165	Mm.343429	NM_010408	ENSMUSG00000021730	Hcn1	Bcng1|C630013B14Rik|HAC2	hyperpolarization-activated, cyclic nucleotide-gated K+ 1	protein-coding	0.090000	0.676617	-87(CCTTTTCTGCCC,+,0.00)
mm_19490.1	chr2	93203564	93203764	-	1	NA	NA	NA	16080	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.010000	0.537313	
mm_29849.1	chr3	129969994	129970194	-	1	NA	NA	NA	112	NM_025779	66815	Mm.31056	NM_025779	ENSMUSG00000027994	Ccdc109b	9030408N13Rik|MCUb	coiled-coil domain containing 109B	protein-coding	0.090000	0.676617	
mm_71883.1	chr8	69812557	69812757	+	1	NA	NA	NA	3970	NM_198101	78816	Mm.324305	NM_198101	ENSMUSG00000036246	Gmip	5031419I10Rik	Gem-interacting protein	protein-coding	0.010000	0.333333	-58(CTCTTTAAAGGA,+,0.00),-58(CTCTTTAAAGGA,-,0.00)
mm_123667.1	chr14	69245168	69245368	-	1	NA	NA	NA	39835	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.020000	0.537313	
mm_9270.1	chr1	171633222	171633422	-	1	NA	NA	NA	8578	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.472637	
mm_2598.1	chr1	119837074	119837274	+	1	NA	NA	NA	-103	NM_019933	19258	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	0.140000	0.721393	
mm_35729.1	chr4	44714237	44714437	-	1	NA	NA	NA	-3897	NM_008782	18507	Mm.439659	NM_008782	ENSMUSG00000014030	Pax5	BSAP|EBB-1|KLP|Pax-5	paired box 5	protein-coding	0.070000	0.656716	
mm_50820.1	chr6	54440417	54440617	+	1	NA	NA	NA	-10296	NR_033635	100042056	Mm.448157	NM_198118	ENSMUSG00000073067	9130019P16Rik	6430501H15Rik|OTTMUSG00000023151	RIKEN cDNA 9130019P16 gene	ncRNA	0.010000	0.328358	50(TTCTTTATAAAC,-,0.00),52(CTTTATAAACAG,+,0.00)
mm_37037.1	chr4	115491050	115491250	-	1	NA	NA	NA	4991	NM_007822	13119	Mm.250901	NM_007822	ENSMUSG00000028715	Cyp4a14	AI314743	cytochrome P450, family 4, subfamily a, polypeptide 14	protein-coding	0.015000	0.532338	
mm_118503.1	chr14	13670836	13671036	+	1	NA	NA	NA	60	NM_177624	218739	Mm.39919	NM_177624	ENSMUSG00000044772	Sntn	A430083B19Rik	sentan, cilia apical structure protein	protein-coding	0.005000	0.512438	59(ATGCCTAAAAGG,-,0.00),88(TCCTTTATAGGG,+,0.00),88(TCCTTTATAGGG,-,0.00)
mm_99381.1	chr11	102041457	102041657	+	1	NA	NA	NA	46	NM_001160713	52685	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	0.020000	0.651741	
mm_19168.1	chr2	84342451	84342651	-	1	NA	NA	NA	82715	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.000000	0.427861	
mm_168723.1	chr12	110694588	110694788	-	1	NA	NA	NA	1707	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.010000	0.437811	
mm_151275.1	chr19	55251835	55252035	+	1	NA	NA	NA	-1434	NM_027976	433256	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.025000	0.552239	
mm_102799.1	chr11	68853955	68854155	-	1	NA	NA	NA	-924	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.005000	0.398010	
mm_121857.1	chr14	20668162	20668362	-	1	NA	NA	NA	92	NM_175132	68760	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	0.025000	0.636816	
mm_138428.1	chr17	35076847	35077047	+	1	NA	NA	NA	5	NM_027366	70274	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	0.020000	0.582090	
mm_135763.1	chr16	56717249	56717449	-	1	NA	NA	NA	101	NM_001252443	21787	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0.120000	0.696517	
mm_151300.1	chr19	55741693	55741893	+	1	NA	NA	NA	-17	NM_001331147	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.075000	0.601990	
mm_44586.1	chr5	24908577	24908777	-	1	NA	NA	NA	-168	NM_001170555	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.135000	0.741294	-100(CTCCTTTTAAGG,-,0.00),-99(TCCTTTTAAGGG,-,0.00),-98(CCTTTTAAGGGA,+,0.00),-97(CTTTTAAGGGAG,+,0.00)
mm_52599.1	chr6	117171397	117171597	+	1	NA	NA	NA	2962	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.025000	0.542289	
mm_138959.1	chr17	44188596	44188796	+	1	NA	NA	NA	124	NM_172621	224796	Mm.37666	NM_172621	ENSMUSG00000023959	Clic5	5730531E12Rik|B330005L24|Gm322|jbg	chloride intracellular channel 5	protein-coding	0.020000	0.492537	
mm_52918.1	chr6	122850483	122850683	+	1	NA	NA	NA	5574	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.000000	0.457711	
mm_128132.1	chr15	31367661	31367861	-	1	NA	NA	NA	-2	NM_027496	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.065000	0.646766	
mm_154941.1	chrX	36195830	36196030	+	1	NA	NA	NA	26	NM_028325	72693	Mm.297698	NM_028325	ENSMUSG00000036699	Zcchc12	2810028A01Rik|AV136720|Sizn1	zinc finger, CCHC domain containing 12	protein-coding	0.045000	0.582090	
mm_132453.1	chr16	36041116	36041316	+	1	NA	NA	NA	26	NM_027113	69544	Mm.37802	NM_027113	ENSMUSG00000034379	Wdr5b	2310009C03Rik|AI606931	WD repeat domain 5B	protein-coding	0.065000	0.577114	
mm_22624.1	chr3	14704508	14704708	+	1	NA	NA	NA	62881	NM_024495	71934	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	0.000000	0.368159	-34(TTCTATAAAAGC,-,0.00)
mm_128085.1	chr15	27697685	27697885	-	1	NA	NA	NA	-16243	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.015000	0.462687	
mm_68014.1	chr7	100954626	100954826	-	1	NA	NA	NA	9640	NM_183168	233571	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.005000	0.358209	
mm_167825.1	chr9	124423204	124423404	+	1	NA	NA	NA	53	NR_027950	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.125000	0.736318	
mm_163100.1	chr11	69735248	69735448	-	1	NA	NA	NA	23285	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.010000	0.542289	
mm_29640.1	chr3	121815119	121815319	-	1	NA	NA	NA	-4	NM_008991	19299	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.180000	0.796020	
mm_44342.1	chr5	17780493	17780693	-	1	NA	NA	NA	55303	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.393035	
mm_105586.1	chr11	106715142	106715342	-	1	NA	NA	NA	39	NM_001305158	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.020000	0.547264	
mm_59157.1	chr7	24370352	24370552	+	1	NA	NA	NA	189	NM_008433	16534	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0.040000	0.676617	
mm_3406.1	chr1	143917735	143917935	+	1	NA	NA	NA	86314	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.020000	0.522388	
mm_11242.1	chr2	29889648	29889848	+	1	NA	NA	NA	28	NM_001177659	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.110000	0.711443	-41(GGGCCTAAATGG,-,0.00),-39(GCCTAAATGGCG,+,0.00)
mm_869.1	chr1	52152234	52152434	+	1	NA	NA	NA	32712	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.045000	0.577114	
mm_2907.1	chr1	132007285	132007485	+	1	NA	NA	NA	-220	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.075000	0.611940	
mm_105675.1	chr11	107470648	107470848	-	1	NA	NA	NA	-28	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.105000	0.711443	
mm_110331.1	chr12	35533781	35533981	-	1	NA	NA	NA	1108	NM_013464	11622	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0.000000	0.313433	
mm_148299.1	chr18	82692803	82693003	-	1	NA	NA	NA	-169	NM_177832	329002	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.200000	0.835821	
mm_13089.1	chr2	91219474	91219674	+	1	NA	NA	NA	16662	NM_007387	11432	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.000000	0.437811	
mm_111675.1	chr12	103346807	103347007	-	1	NA	NA	NA	9094	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.005000	0.477612	-47(ACGTTTAAAAGG,-,0.00)
mm_160718.1	chr10	63100084	63100284	+	1	NA	NA	NA	28	NM_016864	53404	Mm.228661	NM_016864	ENSMUSG00000036816	Atoh7	Math5|bHLHa13	atonal bHLH transcription factor 7	protein-coding	0.155000	0.731343	
mm_95368.1	chr11	49086689	49086889	+	1	NA	NA	NA	-228	NM_001271676	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.020000	0.522388	
mm_2418.1	chr1	94075092	94075292	+	1	NA	NA	NA	-22639	NM_008798	18566	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0.005000	0.422886	
mm_47584.1	chr5	124861758	124861958	-	1	NA	NA	NA	363	NM_144819	215707	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.155000	0.810945	
mm_101594.1	chr11	34683638	34683838	-	1	NA	NA	NA	100167	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.000000	0.432836	
mm_95648.1	chr11	53723910	53724110	+	1	NA	NA	NA	3216	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.015000	0.492537	
mm_3240.1	chr1	136015229	136015429	+	1	NA	NA	NA	-2672	NM_025439	66241	Mm.41773	NM_025439	ENSMUSG00000026411	Tmem9	1500015G18Rik|AW545782	transmembrane protein 9	protein-coding	0.000000	0.517413	
mm_147251.1	chr18	38601246	38601446	-	1	NA	NA	NA	-78	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.080000	0.611940	
mm_81792.1	chr9	115039432	115039632	+	1	NA	NA	NA	-27747	NM_148958	74486	Mm.458474	NM_148958	ENSMUSG00000040875	Osbpl10	4933433D06Rik|C820004B04Rik|OPR-10|ORP-10	oxysterol binding protein-like 10	protein-coding	0.025000	0.562189	-34(CACTATAAAAGG,-,0.00)
mm_108681.1	chr12	86734271	86734471	+	1	NA	NA	NA	2	NM_001195767	627607	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0.030000	0.487562	
mm_84258.1	chr9	62536806	62537006	-	1	NA	NA	NA	138	NM_175484	235431	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.130000	0.786070	
mm_114975.1	chr13	97241954	97242154	+	1	NA	NA	NA	949	NM_007930	13803	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.030000	0.462687	-90(CCTTTTAGAATG,+,0.00)
mm_95269.1	chr11	45006749	45006949	+	1	NA	NA	NA	110079	NR_045100	100504255	Mm.123608	NR_045100	ENSMUSG00000084773	Gm12159	OTTMUSG00000005475	predicted gene 12159	ncRNA	0.010000	0.348259	
mm_41618.1	chr5	96827480	96827680	+	1	NA	NA	NA	34195	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.000000	0.278607	
mm_46536.1	chr5	105701449	105701649	-	1	NA	NA	NA	739	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.030000	0.497512	
mm_132207.1	chr16	32608840	32609040	+	1	NA	NA	NA	44	NM_011638	22042	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0.095000	0.666667	
mm_91446.1	chr10	33936539	33936739	-	1	NA	NA	NA	14573	NM_028287	72580	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	0.000000	0.378109	4(GTTTTTAGAGAA,+,0.00)
mm_20764.1	chr2	142757952	142758152	-	1	NA	NA	NA	143412	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.005000	0.492537	
mm_130359.1	chr15	97767614	97767814	-	1	NA	NA	NA	-48	NM_001177811	223864	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.065000	0.686567	
mm_124998.1	chr15	23038282	23038482	+	1	NA	NA	NA	1919	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding	0.000000	0.437811	
mm_64053.1	chr7	140845465	140845665	+	1	NA	NA	NA	0	NM_001099742	338417	Mm.270960	NM_001099742	ENSMUSG00000038801	Scgb1c1	Ryd5	secretoglobin, family 1C, member 1	protein-coding	0.025000	0.577114	-35(CAGCATAAAAGC,-,0.00)
mm_169484.1	chr14	73797055	73797255	-	1	NA	NA	NA	244369	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	0.055000	0.552239	
mm_70608.1	chr8	13404989	13405189	+	1	NA	NA	NA	8	NM_011881	24013	Mm.257501	NM_011881	ENSMUSG00000031450	Grk1	Gprk1|Rhok|Rk	G protein-coupled receptor kinase 1	protein-coding	0.030000	0.567164	
mm_29895.1	chr3	131322370	131322570	-	1	NA	NA	NA	-19243	NM_027816	71519	Mm.473179	NM_027816	ENSMUSG00000027983	Cyp2u1	8430436A10Rik	cytochrome P450, family 2, subfamily u, polypeptide 1	protein-coding	0.005000	0.398010	15(GTTTTTAAAGAA,+,0.00)
mm_159821.1	chr5	122823868	122824068	+	1	NA	NA	NA	-2626	NM_001289519	59008	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	0.005000	0.457711	-52(CTTTTTATAAGA,+,0.00)
mm_118024.1	chr13	100833307	100833507	-	1	NA	NA	NA	20	NM_022885	69048	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.120000	0.716418	
mm_129316.1	chr15	77760902	77761102	-	1	NA	NA	NA	-5773	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.010000	0.462687	
mm_14980.1	chr2	152110735	152110935	+	1	NA	NA	NA	5311	NM_029688	76650	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.015000	0.477612	
mm_119806.1	chr14	54220603	54220803	+	1	NA	NA	NA	33226	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.497512	
mm_20151.1	chr2	121551265	121551465	-	1	NA	NA	NA	44642	NM_001290986	241627	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	0.015000	0.587065	-83(CCCCTGATAAGG,-,0.00)
mm_156043.1	chrX	108484306	108484506	+	1	NA	NA	NA	349949	NM_001081477	382236	Mm.100112	NM_001081477	ENSMUSG00000063663	Brwd3	Brodl|D030064D06Rik|Gm596	bromodomain and WD repeat domain containing 3	protein-coding	0.005000	0.427861	
mm_12788.1	chr2	79606199	79606399	+	1	NA	NA	NA	-29126	NM_080558	70599	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0.005000	0.348259	
mm_84028.1	chr9	57761874	57762074	-	1	NA	NA	NA	3886	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.000000	0.537313	
mm_31306.1	chr4	46077060	46077260	+	1	NA	NA	NA	37938	NM_021883	21916	Mm.249594	NM_021883	ENSMUSG00000028328	Tmod1	E-Tmod|Tmod	tropomodulin 1	protein-coding	0.010000	0.482587	-30(TCATAAATAGCC,+,0.00)
mm_109048.1	chr12	104338294	104338494	+	1	NA	NA	NA	-92	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.010000	0.477612	
mm_64597.1	chr7	3203975	3204175	-	1	NA	NA	NA	-14551	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.010000	0.477612	-35(CTCTTTAAAAAA,-,0.00)
mm_161977.1	chr19	13500425	13500625	+	1	NA	NA	NA	-21	NM_146696	258691	Mm.271532	NM_146696	ENSMUSG00000071629	Olfr1477	MOR202-10	olfactory receptor 1477	protein-coding	0.005000	0.383085	
mm_114050.1	chr13	54302692	54302892	+	1	NA	NA	NA	-68557	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.120000	0.716418	
mm_25301.1	chr3	105973700	105973900	+	1	NA	NA	NA	-2	NM_007696	12659	Mm.431947	NM_007696	ENSMUSG00000074340	Ovgp1	120kDa|AU016433|AU019448|Chit5|MOGP|OGP|muc9	oviductal glycoprotein 1	protein-coding	0.010000	0.507463	-34(TCCTATTAAAGA,-,0.00)
mm_11759.1	chr2	38511779	38511979	+	1	NA	NA	NA	3	NM_001159631	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.145000	0.786070	
mm_82638.1	chr9	21989342	21989542	-	1	NA	NA	NA	11	NM_023622	71746	Mm.110594	NM_023622	ENSMUSG00000040146	Rgl3	1300003D20Rik|mFLJ00153	ral guanine nucleotide dissociation stimulator-like 3	protein-coding	0.070000	0.716418	
mm_50509.1	chr6	49036616	49036816	+	1	NA	NA	NA	198	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.045000	0.611940	
mm_65160.1	chr7	19671709	19671909	-	1	NA	NA	NA	2111	NM_001309795	11813	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0.020000	0.552239	
mm_43490.1	chr5	136932848	136933048	+	1	NA	NA	NA	13802	NR_015555	66752	Mm.135764	NR_015555	ENSMUSG00000097908	4933404O12Rik	AW494809	RIKEN cDNA 4933404O12 gene	ncRNA	0.005000	0.487562	
mm_13178.1	chr2	92954473	92954673	+	1	NA	NA	NA	39472	NM_030725	80976	Mm.33490	NM_030725	ENSMUSG00000027220	Syt13	5730409J20Rik|AI549909|mKIAA1427	synaptotagmin XIII	protein-coding	0.020000	0.542289	
mm_143989.1	chr17	87644632	87644832	-	1	NA	NA	NA	8753	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.000000	0.467662	
mm_151937.1	chr19	5800660	5800860	-	1	NA	NA	NA	1912	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.010000	0.457711	
mm_33046.1	chr4	122995964	122996164	+	1	NA	NA	NA	133	NM_008506	16918	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	0.175000	0.800995	
mm_114059.1	chr13	54371383	54371583	+	1	NA	NA	NA	134	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.085000	0.716418	
mm_45000.1	chr5	38220330	38220530	-	1	NA	NA	NA	-2	NM_029162	75079	Mm.258741	NM_029162	ENSMUSG00000029127	Zbtb49	4930518A03Rik|Zfp509|Znf509	zinc finger and BTB domain containing 49	protein-coding	0.140000	0.696517	
mm_94896.1	chr11	29131565	29131765	+	1	NA	NA	NA	914	NM_027869	71701	Mm.211131	NM_027869	ENSMUSG00000020464	Pnpt1	1200003F12Rik|Old35|PNPase|Pnptl1	polyribonucleotide nucleotidyltransferase 1	protein-coding	0.000000	0.348259	
mm_113913.1	chr13	49504695	49504895	+	1	NA	NA	NA	-15	NM_001012324	407800	Mm.386931	NM_001012324	ENSMUSG00000043631	Ecm2	9030618O22Rik|BC065151|tenonectin	extracellular matrix protein 2, female organ and adipocyte specific	protein-coding	0.015000	0.432836	
mm_45797.1	chr5	87567257	87567457	-	1	NA	NA	NA	1649	NM_016771	53315	Mm.6824	NM_016771	ENSMUSG00000029273	Sult1d1	5033411P13Rik|AI987815|ST1d1|SULT-N|Sultn	sulfotransferase family 1D, member 1	protein-coding	0.005000	0.393035	41(CTCTTTAAAGAG,+,0.00),41(CTCTTTAAAGAG,-,0.00)
mm_112018.1	chr12	111377550	111377750	-	1	NA	NA	NA	68	NM_183016	217866	Mm.27397	NM_183016	ENSMUSG00000021279	Cdc42bpb	MRCKb	CDC42 binding protein kinase beta	protein-coding	0.185000	0.820896	
mm_81700.1	chr9	111224482	111224682	+	1	NA	NA	NA	47026	NM_026810	17350	Mm.486383	NM_026810	ENSMUSG00000032498	Mlh1	1110035C23Rik|AI317206|AI325952|AI561766	mutL homolog 1	protein-coding	0.000000	0.348259	
mm_35404.1	chr4	34730048	34730248	-	1	NA	NA	NA	58	NM_027041	69329	Mm.389548	NM_027041	ENSMUSG00000028294	Cfap206	1700003M02Rik|AU024269	cilia and flagella associated protein 206	protein-coding	0.120000	0.661692	
mm_146301.1	chr18	80207095	80207295	+	1	NA	NA	NA	328	NM_001042408	27366	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|ENSMUSG00000057130|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	0.100000	0.631841	
mm_17279.1	chr2	26097155	26097355	-	1	NA	NA	NA	-4859	NM_001037098	67991	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.000000	0.437811	
mm_67354.1	chr7	79836248	79836448	-	1	NA	NA	NA	6004	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.035000	0.532338	
mm_20714.1	chr2	134643955	134644155	-	1	NA	NA	NA	66	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding	0.080000	0.696517	
mm_165546.1	chr3	7366562	7366762	+	1	NA	NA	NA	58	NM_008862	18767	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	0.095000	0.721393	
mm_53227.1	chr6	127150140	127150340	+	1	NA	NA	NA	614	NR_040273	77558	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.050000	0.601990	
mm_36801.1	chr4	103173277	103173477	-	1	NA	NA	NA	41507	NM_177732	242585	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.000000	0.393035	
mm_67054.1	chr7	67369927	67370127	-	1	NA	NA	NA	2831	NM_001291192	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.000000	0.293532	-89(GACTTTATAAGA,-,0.00)
mm_130945.1	chr15	103251581	103251781	-	1	NA	NA	NA	-5	NM_001302338	18022	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.005000	0.537313	
mm_91029.1	chr10	17947948	17948148	-	1	NA	NA	NA	19	NM_001033432	380629	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.145000	0.751244	
mm_95674.1	chr11	54100897	54101097	+	1	NA	NA	NA	73	NM_011031	18452	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.150000	0.786070	
mm_67557.1	chr7	81706835	81707035	-	1	NA	NA	NA	-10	NM_001164086	26557	Mm.228	NM_011983	ENSMUSG00000025813	Homer2	9330120H11Rik|AW539445|CPD|Vesl-2	homer scaffolding protein 2	protein-coding	0.180000	0.835821	
mm_96427.1	chr11	67277076	67277276	+	1	NA	NA	NA	52	NM_177369	17885	Mm.340163	NM_177369	ENSMUSG00000055775	Myh8	4832426G23Rik|AI327267|MHCp|MyHC-pn|Myhs-p|Myhsp	myosin, heavy polypeptide 8, skeletal muscle, perinatal	protein-coding	0.025000	0.552239	6(TCCTATATAAGC,-,0.00)
mm_20917.1	chr2	150638001	150638201	-	1	NA	NA	NA	-29393	NR_040331	109344	Mm.440012	NR_040331	ENSMUSG00000087406	E130215H24Rik	-	RIKEN cDNA E130215H24 gene	ncRNA	0.005000	0.482587	
mm_61006.1	chr7	49348113	49348313	+	1	NA	NA	NA	102024	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.025000	0.517413	
mm_104743.1	chr11	98438875	98439075	-	1	NA	NA	NA	13	NM_025559	103742	Mm.259614	NM_025559	ENSMUSG00000002580	Mien1	1810046J19Rik|AI463380|Rdx12	migration and invasion enhancer 1	protein-coding	0.095000	0.706468	
mm_149014.1	chr19	8740618	8740818	+	1	NA	NA	NA	0	NM_001177347	74307	Mm.48791	NM_001177347	ENSMUSG00000090840	1700092M07Rik	-	RIKEN cDNA 1700092M07 gene	protein-coding	0.030000	0.597015	
mm_53232.1	chr6	127434333	127434533	+	1	NA	NA	NA	-12407	NM_001346513	101187	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.010000	0.437811	
mm_109683.1	chr12	113140378	113140578	+	1	NA	NA	NA	-127	NM_001347443	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.140000	0.791045	
mm_54013.1	chr6	8193590	8193790	-	1	NA	NA	NA	-1073	NM_001037865	213945	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	0.005000	0.373134	
mm_51871.1	chr6	90552105	90552305	+	1	NA	NA	NA	1357	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.000000	0.517413	
mm_166260.1	chr5	87682242	87682442	+	1	NA	NA	NA	16134	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.005000	0.383085	-46(CCATATAGAGGC,+,0.00)
mm_122395.1	chr14	40993973	40994173	-	1	NA	NA	NA	12847	NM_001316739	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.005000	0.437811	
mm_88174.1	chr10	69787345	69787545	+	1	NA	NA	NA	-138087	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.015000	0.462687	
mm_151285.1	chr19	55284236	55284436	+	1	NA	NA	NA	30967	NM_027976	433256	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.005000	0.487562	
mm_92600.1	chr10	80104207	80104407	-	1	NA	NA	NA	-1605	NM_183426	216161	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch homolog 2 (Drosophila)	protein-coding	0.010000	0.532338	
mm_165594.1	chr3	38258759	38258959	+	1	NA	NA	NA	-50740	NR_040541	71342	Mm.410782	NR_040541	ENSMUSG00000106002	5430434I15Rik	-	RIKEN cDNA 5430434I15 gene	ncRNA	0.005000	0.452736	
mm_5099.1	chr1	4972303	4972503	-	1	NA	NA	NA	46331	NM_001290372	58175	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0.000000	0.398010	
mm_155628.1	chrX	84076535	84076735	+	1	NA	NA	NA	-588711	NM_021898	100502723	Mm.383210	NM_021898	ENSMUSG00000035522	Tsga8	Halap-X|Halapx	testis specific gene A8	protein-coding	0.010000	0.487562	
mm_42813.1	chr5	121837167	121837367	+	1	NA	NA	NA	-408	NM_008507	16923	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.085000	0.701493	
mm_171803.1	chr5	124618876	124619076	+	1	NA	NA	NA	-10076	NM_011596	21871	Mm.1158	NM_011596	ENSMUSG00000038023	Atp6v0a2	8430408C20Rik|AI385560|ATP6a2|AW489264|Atp6n1d|Atp6n2|C76904|ISF|J6B7|SHIF|Stv1|TJ6M|TJ6s|Tj6|V-ATPase 116 kDa|V-ATPase a2	ATPase, H+ transporting, lysosomal V0 subunit A2	protein-coding	0.025000	0.597015	
mm_43211.1	chr5	129363462	129363662	+	1	NA	NA	NA	-137669	NM_172276	231769	Mm.288714	NM_172276	ENSMUSG00000029439	Sfswap	1190005N23Rik|6330437E22Rik|AI197402|AW212079|SWAP|Sfrs8|Srsf8	splicing factor, suppressor of white-apricot homolog (Drosophila)	protein-coding	0.020000	0.537313	
mm_37527.1	chr4	124850528	124850728	-	1	NA	NA	NA	-64	NM_001347196	68920	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	0.145000	0.776119	-64(CCGCTTAAAGGG,-,0.00),-62(GCTTAAAGGGAC,+,0.00)
mm_117171.1	chr13	62888061	62888261	-	1	NA	NA	NA	121	NM_019395	14121	Mm.423078	NM_019395	ENSMUSG00000069805	Fbp1	Fbp-2|Fbp2|Fbp3	fructose bisphosphatase 1	protein-coding	0.015000	0.567164	
mm_56469.1	chr6	99025114	99025314	-	1	NA	NA	NA	3084	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.005000	0.358209	
mm_124092.1	chr14	79151705	79151905	-	1	NA	NA	NA	95562	NM_001033215	105590	Mm.486536	NM_001033215	ENSMUSG00000071262	Zfp957	AU017455	zinc finger protein 957	protein-coding	0.010000	0.402985	
mm_113703.1	chr13	43183888	43184088	+	1	NA	NA	NA	-12487	NM_001252640	67046	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	0.005000	0.492537	
mm_137903.1	chr17	31912565	31912765	+	1	NA	NA	NA	-56873	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.030000	0.592040	
mm_26951.1	chr3	20275376	20275576	-	1	NA	NA	NA	257	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.020000	0.383085	
mm_29365.1	chr3	108704347	108704547	-	1	NA	NA	NA	17852	NM_029522	76123	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0.015000	0.537313	
mm_27471.1	chr3	52856310	52856510	-	1	NA	NA	NA	71256	NR_040555	622124	Mm.389434	NR_040555	ENSMUSG00000104401	Gm20750	-	predicted gene, 20750	ncRNA	0.020000	0.442786	
mm_122686.1	chr14	52019700	52019900	-	1	NA	NA	NA	-87	NM_001253694	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.105000	0.676617	
mm_58213.1	chr6	144203976	144204176	-	1	NA	NA	NA	5492	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.025000	0.542289	
mm_159320.1	chr3	15542263	15542463	-	1	NA	NA	NA	32702	NM_001173460	668101	Mm.423523	NM_001173460	ENSMUSG00000095028	Sirpb1b	-	signal-regulatory protein beta 1B	protein-coding	0.005000	0.427861	
mm_29791.1	chr3	127553199	127553399	-	1	NA	NA	NA	50	NM_138593	28036	Mm.291032	NM_138593	ENSMUSG00000027968	Larp7	C330027G06Rik|D3Wsu161e	La ribonucleoprotein domain family, member 7	protein-coding	0.130000	0.651741	
mm_15069.1	chr2	153107565	153107765	+	1	NA	NA	NA	-803	NM_001172117	15162	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.025000	0.512438	
mm_26384.1	chr3	142569079	142569279	+	1	NA	NA	NA	8683	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.015000	0.532338	
mm_151633.1	chr19	3929675	3929875	-	1	NA	NA	NA	-59	NM_026316	67689	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0.030000	0.611940	
mm_148466.1	chr19	4082442	4082642	+	1	NA	NA	NA	54	NM_001160253	29866	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0.010000	0.532338	
mm_47173.1	chr5	120744236	120744436	-	1	NA	NA	NA	5512	NM_145227	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.000000	0.378109	
mm_108123.1	chr12	75880036	75880236	+	1	NA	NA	NA	-28967	NR_039560	100628610		NR_039560	ENSMUSG00000092922	Mir5101	mmu-mir-5101|mu-mir-5101	microRNA 5101	ncRNA	0.015000	0.462687	
mm_123655.1	chr14	69242989	69243189	-	1	NA	NA	NA	42014	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.000000	0.462687	
mm_17369.1	chr2	26910512	26910712	-	1	NA	NA	NA	30	NM_011513	20933	Mm.397932	NM_011513	ENSMUSG00000015776	Med22	AW212655|AW558812|Surf-5|Surf5	mediator complex subunit 22	protein-coding	0.135000	0.746269	
mm_58210.1	chr6	144020009	144020209	-	1	NA	NA	NA	-73003	NM_001347506	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.005000	0.472637	
mm_61187.1	chr7	63444652	63444852	+	1	NA	NA	NA	-20	NM_130880	170711	Mm.156872	NM_130880	ENSMUSG00000033510	Otud7a	AJ430384|Otud7	OTU domain containing 7A	protein-coding	0.175000	0.815920	
mm_34855.1	chr4	155522476	155522676	+	1	NA	NA	NA	31215	NM_001160016	14688	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.030000	0.547264	
mm_166537.1	chr6	30804913	30805113	+	1	NA	NA	NA	63714	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.547264	
mm_64785.1	chr7	5125896	5126096	-	1	NA	NA	NA	-46	NM_009028	19428	Mm.322186	NM_009028	ENSMUSG00000083649	Rasl2-9	M2|Ran|Ran/M2|Rasl2-9-ps	RAS-like, family 2, locus 9	protein-coding	0.100000	0.691542	15(GCCTTTAGAGGG,+,0.00)
mm_137109.1	chr17	21976301	21976501	+	1	NA	NA	NA	13842	NM_001025373	74670	Mm.26540	NM_001025373	ENSMUSG00000053347	Zfp943	4930432O21Rik	zinc finger prtoein 943	protein-coding	0.000000	0.358209	
mm_128184.1	chr15	34678716	34678916	-	1	NA	NA	NA	-110	NM_145469	223473	Mm.258402	NM_145469	ENSMUSG00000038879	Nipal2	9330161F08Rik|Npal2	NIPA-like domain containing 2	protein-coding	0.100000	0.706468	
mm_172241.1	chr6	68970375	68970575	+	1	NA	NA	NA	356699	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.040000	0.502488	
mm_88908.1	chr10	81179477	81179677	+	1	NA	NA	NA	616	NR_028549	100217454		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.035000	0.562189	
mm_148893.1	chr19	6906809	6907009	+	1	NA	NA	NA	2736	NM_012021	54683	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.015000	0.606965	
mm_148958.1	chr19	7417078	7417278	+	1	NA	NA	NA	-447	NM_175381	108899	Mm.386838	NM_175381	ENSMUSG00000053080	2700081O15Rik	AI255177|AI848741|AW742297	RIKEN cDNA 2700081O15 gene	protein-coding	0.110000	0.791045	
mm_74106.1	chr8	122870485	122870685	+	1	NA	NA	NA	22211	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.070000	0.701493	
mm_135992.1	chr16	75141803	75142003	-	1	NA	NA	NA	444158	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.000000	0.233831	-57(GTTTTTAAAGCA,+,0.00)
mm_10176.1	chr2	4559957	4560157	+	1	NA	NA	NA	303	NM_001177844	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.025000	0.467662	48(GCCTTGATAAGG,-,0.00)
mm_140268.1	chr17	84683037	84683237	+	1	NA	NA	NA	16	NM_026180	67470	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP-binding cassette, sub-family G (WHITE), member 8	protein-coding	0.010000	0.542289	
mm_133371.1	chr16	84709260	84709460	+	1	NA	NA	NA	-3663	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.000000	0.298507	56(GCTTATATAAAG,+,0.00),56(GCTTATATAAAG,-,0.00)
mm_46252.1	chr5	99251419	99251619	-	1	NA	NA	NA	1408	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.030000	0.512438	
mm_91257.1	chr10	23185432	23185632	-	1	NA	NA	NA	164358	NM_001347372	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.005000	0.482587	
mm_143003.1	chr17	56423236	56423436	-	1	NA	NA	NA	-4427	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0.040000	0.611940	
mm_65021.1	chr7	18069293	18069493	-	1	NA	NA	NA	3464	NM_001162523	67315	Mm.46089	NM_026087	ENSMUSG00000030366	Ceacam12	1600031J20Rik|Ceacam12-C1|Ceacam12-C3|Ceacam12C1|Ceacam12C3	carcinoembryonic antigen-related cell adhesion molecule 12	protein-coding	0.020000	0.472637	
mm_74272.1	chr8	125012896	125013096	+	1	NA	NA	NA	-1	NM_016909	53424	Mm.5248	NM_016909	ENSMUSG00000056820	Tsnax	R74833|Trax	translin-associated factor X	protein-coding	0.140000	0.761194	
mm_1333.1	chr1	65311355	65311555	+	1	NA	NA	NA	198	NM_139270	213527	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	0.060000	0.666667	
mm_209.1	chr1	16661439	16661639	+	1	NA	NA	NA	-3652	NM_027415	70397	Mm.194225	NM_026392	ENSMUSG00000025940	Tmem70	1110020A09Rik|2210416J16Rik	transmembrane protein 70	protein-coding	0.005000	0.487562	-34(AACCATATAAGG,-,0.00)
mm_136768.1	chr17	8988244	8988444	+	1	NA	NA	NA	11	NM_001347544	66931	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	0.035000	0.562189	
mm_32847.1	chr4	117883504	117883704	+	1	NA	NA	NA	-128	NM_001253381	53418	Mm.123843	NM_017377	ENSMUSG00000028541	B4galt2	Ggtb2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	protein-coding	0.110000	0.721393	
mm_32255.1	chr4	102570502	102570702	+	1	NA	NA	NA	542	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.050000	0.616915	
mm_6677.1	chr1	80405397	80405597	-	1	NA	NA	NA	-40435	NR_040460	72208	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	Jr3	RIKEN cDNA 1700016L21 gene	ncRNA	0.005000	0.442786	46(TCTTAAATAGTC,+,0.00)
mm_55765.1	chr6	78466761	78466961	-	1	NA	NA	NA	2013	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.005000	0.492537	
mm_23400.1	chr3	57976926	57977126	+	1	NA	NA	NA	-129269	NM_019410	18645	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	0.005000	0.427861	
mm_152926.1	chr19	28011473	28011673	-	1	NA	NA	NA	-407	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.100000	0.681592	
mm_93832.1	chr10	121586616	121586816	-	1	NA	NA	NA	78	NM_019786	56480	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.160000	0.810945	
mm_69155.1	chr7	127144458	127144658	-	1	NA	NA	NA	-6735	NM_001037810	20737	Mm.283714	NM_009259	ENSMUSG00000051457	Spn	A630014B01Rik|Cd43|Galgp|Ly-48|Ly48	sialophorin	protein-coding	0.010000	0.502488	
mm_167628.1	chr9	61355944	61356144	+	1	NA	NA	NA	-16322	NM_001083928	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.010000	0.452736	
mm_142240.1	chr17	37482321	37482521	-	1	NA	NA	NA	1108	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.010000	0.467662	
mm_85348.1	chr9	103208984	103209184	-	1	NA	NA	NA	-7019	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.005000	0.457711	
mm_111049.1	chr12	80108759	80108959	-	1	NA	NA	NA	4154	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.015000	0.417910	
mm_138905.1	chr17	43588477	43588677	+	1	NA	NA	NA	2932	NR_045445	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.005000	0.432836	
mm_99285.1	chr11	101321800	101322000	+	1	NA	NA	NA	-3163	NM_178932	237940	Mm.302277	NM_178932	ENSMUSG00000078651	Aoc2	RAO	amine oxidase, copper containing 2 (retina-specific)	protein-coding	0.020000	0.487562	
mm_4755.1	chr1	182287946	182288146	+	1	NA	NA	NA	-5287	NM_007853	13244	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.010000	0.577114	
mm_122008.1	chr14	26970732	26970932	-	1	NA	NA	NA	-281	NM_145221	72993	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	0.080000	0.562189	
mm_35802.1	chr4	46601791	46601991	-	1	NA	NA	NA	38	NM_001164804	107684	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.180000	0.850746	
mm_33014.1	chr4	120925044	120925244	+	1	NA	NA	NA	-139	NM_001160043	73172	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	0.060000	0.631841	
mm_94799.1	chr11	22973752	22973952	+	1	NA	NA	NA	1847	NM_011663	22183	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.040000	0.492537	
mm_101445.1	chr11	30197740	30197940	-	1	NA	NA	NA	417	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.045000	0.611940	
mm_2622.1	chr1	120602333	120602533	+	1	NA	NA	NA	-54	NM_010133	13798	Mm.2657	NM_010133	ENSMUSG00000058665	En1	En-1|Mo-en.1|engrailed-1	engrailed 1	protein-coding	0.055000	0.527363	
mm_35982.1	chr4	54945759	54945959	-	1	NA	NA	NA	-2086	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.030000	0.552239	
mm_64106.1	chr7	141047925	141048125	+	1	NA	NA	NA	-13249	NM_177897	330671	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.030000	0.601990	
mm_272.1	chr1	21218711	21218911	+	1	NA	NA	NA	236	NM_029398	75712	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	0.045000	0.582090	
mm_84264.1	chr9	62537276	62537476	-	1	NA	NA	NA	-332	NM_175484	235431	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.020000	0.557214	
mm_67615.1	chr7	83884230	83884430	-	1	NA	NA	NA	11	NM_030705	80889	Mm.272998	NM_030705	ENSMUSG00000070462	Mesdc1	AW061151	mesoderm development candidate 1	protein-coding	0.120000	0.696517	
mm_41624.1	chr5	96917905	96918105	+	1	NA	NA	NA	-3267	NR_131152	666266	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0.025000	0.492537	
mm_119858.1	chr14	54464398	54464598	+	1	NA	NA	NA	351	NM_022993	65107	Mm.472719	NM_022993	ENSMUSG00000022175	Lrp10	Lrp9	low-density lipoprotein receptor-related protein 10	protein-coding	0.070000	0.666667	
mm_139301.1	chr17	48346379	48346579	+	1	NA	NA	NA	78	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.010000	0.552239	
mm_21180.1	chr2	154899052	154899252	-	1	NA	NA	NA	-6246	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.025000	0.462687	-34(CTGCATAAAAAG,-,0.00)
mm_17924.1	chr2	35461159	35461359	-	1	NA	NA	NA	190	NM_001308299	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.040000	0.567164	
mm_59415.1	chr7	27121550	27121750	+	1	NA	NA	NA	1695	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.015000	0.601990	
mm_40013.1	chr5	33018951	33019151	+	1	NA	NA	NA	235	NM_011738	22629	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.170000	0.736318	
mm_32264.1	chr4	102596016	102596216	+	1	NA	NA	NA	6273	NM_001177981	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.015000	0.477612	
mm_133441.1	chr16	87720803	87721003	+	1	NA	NA	NA	21949	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.020000	0.368159	
mm_73331.1	chr8	105300156	105300356	+	1	NA	NA	NA	2593	NM_148952	104394	Mm.34554	NM_148952	ENSMUSG00000014859	E2f4	2010111M04Rik|AI427446	E2F transcription factor 4	protein-coding	0.005000	0.527363	
mm_74759.1	chr8	19158550	19158750	-	1	NA	NA	NA	763	NM_153115	78128	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	0.005000	0.447761	-47(CCTCAAAGAGGC,+,0.00),-38(GGCTTTTTAAAC,-,0.00),-36(CTTTTTAAACAC,+,0.00),-19(GTGTTTAAAAGC,-,0.00)
mm_136943.1	chr17	14279441	14279641	+	1	NA	NA	NA	35	NM_022315	64074	Mm.30162	NM_022315	ENSMUSG00000023886	Smoc2	1700056C05Rik|5430426J21Rik|Smoc2l	SPARC related modular calcium binding 2	protein-coding	0.110000	0.711443	
mm_50797.1	chr6	54267040	54267240	+	1	NA	NA	NA	-2016	NM_001311134	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.005000	0.482587	-41(GCTCATAAAGCC,+,0.00)
mm_48450.1	chr5	140702128	140702328	-	1	NA	NA	NA	150	NM_028833	74239	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	0.090000	0.711443	
mm_155639.1	chrX	85202642	85202842	+	1	NA	NA	NA	-46935	NM_028046	71996	Mm.20201	NM_028046	ENSMUSG00000035491	Fthl17a	1600014K23Rik|AI324104	ferritin, heavy polypeptide-like 17, member A	protein-coding	0.010000	0.293532	76(TTCTTTATATGG,-,0.00),78(CTTTATATGGAA,+,0.00)
mm_94526.1	chr11	9048976	9049176	+	1	NA	NA	NA	-85	NM_177576	194974	Mm.79210	NM_177576	ENSMUSG00000040985	Sun3	Sunc1	Sad1 and UNC84 domain containing 3	protein-coding	0.045000	0.592040	
mm_136613.1	chr17	5336577	5336777	+	1	NA	NA	NA	82090	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.010000	0.567164	
mm_147665.1	chr18	60613414	60613614	-	1	NA	NA	NA	-3410	NM_001109975	104027	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	0.020000	0.527363	
mm_72889.1	chr8	90492961	90493161	+	1	NA	NA	NA	-144809	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding	0.030000	0.532338	
mm_131155.1	chr16	6862901	6863101	+	1	NA	NA	NA	-206834	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.005000	0.363184	
mm_117886.1	chr13	99421632	99421832	-	1	NA	NA	NA	-8906	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.085000	0.587065	
mm_40916.1	chr5	75642367	75642567	+	1	NA	NA	NA	67476	NM_021099	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	KIT proto-oncogene receptor tyrosine kinase	protein-coding	0.020000	0.343284	
mm_99984.1	chr11	114675415	114675615	+	1	NA	NA	NA	47	NM_053273	117160	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.110000	0.706468	
mm_25035.1	chr3	98279841	98280041	+	1	NA	NA	NA	-490	NM_008256	15360	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.010000	0.487562	-25(TGGTATTAAAAG,-,0.00),58(GGGTATTTAAGA,-,0.00)
mm_58073.1	chr6	136924123	136924323	-	1	NA	NA	NA	-2043	NM_026983	69187	Mm.33692	NM_026983	ENSMUSG00000030219	Erp27	1810033M07Rik|1810047B09Rik	endoplasmic reticulum protein 27	protein-coding	0.025000	0.532338	
mm_146183.1	chr18	75562663	75562863	+	1	NA	NA	NA	48118	NR_045879	100038353	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	ENSMUSG00000073534	predicted gene 10532	ncRNA	0.025000	0.522388	
mm_169252.1	chr13	78261601	78261801	+	1	NA	NA	NA	-62828	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.010000	0.457711	
mm_136805.1	chr17	12378559	12378759	+	1	NA	NA	NA	50	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.010000	0.427861	
mm_97951.1	chr11	83677409	83677609	+	1	NA	NA	NA	14925	NM_013652	20303	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.005000	0.447761	
mm_96090.1	chr11	60388102	60388302	+	1	NA	NA	NA	28897	NM_145427	246782	Mm.41651	NM_145427	ENSMUSG00000042709	Atpaf2	ATP12|ATP12p	ATP synthase mitochondrial F1 complex assembly factor 2	protein-coding	0.010000	0.472637	
mm_67675.1	chr7	88530827	88531027	-	1	NA	NA	NA	100654	NM_028238	72433	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	0.050000	0.527363	
mm_170391.1	chr1	86356610	86356810	-	1	NA	NA	NA	-383	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.005000	0.432836	
mm_142466.1	chr17	45601807	45602007	-	1	NA	NA	NA	8	NM_001177470	653016	Mm.45676	NM_001177468	ENSMUSG00000079471	Gm7325	EG653016|Esgp	predicted gene 7325	protein-coding	0.000000	0.517413	
mm_123574.1	chr14	66999814	67000014	-	1	NA	NA	NA	8963	NM_009761	12177	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0.010000	0.378109	7(GCTTTAATGCAG,+,0.00)
mm_115210.1	chr13	109260294	109260494	+	1	NA	NA	NA	-64350	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.060000	0.606965	
mm_127253.1	chr15	99702008	99702208	+	1	NA	NA	NA	-179	NM_031842	83797	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.090000	0.661692	
mm_163874.1	chr14	19419326	19419526	-	1	NA	NA	NA	183161	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.348259	
mm_131071.1	chr16	4684018	4684218	+	1	NA	NA	NA	48	NM_001135112	83945	Mm.248337	NM_023646	ENSMUSG00000004069	Dnaja3	1200003J13Rik|1810053A11Rik|C81173|Tid-1|Tid1l	DnaJ heat shock protein family (Hsp40) member A3	protein-coding	0.115000	0.711443	
mm_77.1	chr1	6730029	6730229	+	1	NA	NA	NA	78	NR_045188	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.015000	0.462687	
mm_94034.1	chr10	127991176	127991376	-	1	NA	NA	NA	16232	NM_013786	27400	Mm.26719	NM_013786	ENSMUSG00000025396	Hsd17b6	17betaHSD9|Hsd17b9|Rdh8	hydroxysteroid (17-beta) dehydrogenase 6	protein-coding	0.030000	0.507463	
mm_141571.1	chr17	32315668	32315868	-	1	NA	NA	NA	5470	NM_019774	56399	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	0.020000	0.492537	
mm_52237.1	chr6	104493125	104493325	+	1	NA	NA	NA	181	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding	0.020000	0.482587	
mm_74724.1	chr8	17535094	17535294	-	1	NA	NA	NA	191	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.135000	0.771144	
mm_74711.1	chr8	17214751	17214951	-	1	NA	NA	NA	320534	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.000000	0.402985	
mm_102536.1	chr11	61174940	61175140	-	1	NA	NA	NA	19	NM_001004143	216825	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	0.095000	0.676617	
mm_131576.1	chr16	18392488	18392688	+	1	NA	NA	NA	25	NM_001272032	11877	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velo-cardio-facial syndrome	protein-coding	0.105000	0.766169	
mm_111100.1	chr12	80780401	80780601	-	1	NA	NA	NA	-10031	NM_178682	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.025000	0.477612	
mm_67714.1	chr7	89980796	89980996	-	1	NA	NA	NA	80	NM_021876	13626	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	ENSMUSG00000039373|l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	0.075000	0.606965	
mm_152843.1	chr19	23448300	23448500	-	1	NA	NA	NA	-78	NM_174857	71738	Mm.50841	NM_174857	ENSMUSG00000033207	Mamdc2	1200015L10Rik|AI591564|mamcan	MAM domain containing 2	protein-coding	0.015000	0.562189	28(GCTTTAAAATTC,+,0.00)
mm_99361.1	chr11	101642686	101642886	+	1	NA	NA	NA	14837	NM_025654	66599	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.010000	0.368159	
mm_69538.1	chr7	135695434	135695634	-	1	NA	NA	NA	20845	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.000000	0.427861	
mm_158351.1	chrX	134556033	134556233	-	1	NA	NA	NA	-14463	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.005000	0.358209	
mm_80056.1	chr9	69363760	69363960	+	1	NA	NA	NA	387	NR_136934	102642202	Mm.415363	NR_136934	ENSMUSG00000086648	Gm15511	OTTMUSG00000023029	predicted gene 15511	ncRNA	0.010000	0.482587	
mm_84363.1	chr9	64790725	64790925	-	1	NA	NA	NA	-20186	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.025000	0.507463	
mm_129752.1	chr15	82354101	82354301	-	1	NA	NA	NA	90	NM_025987	67130	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	0.125000	0.701493	
mm_2397.1	chr1	93685673	93685873	+	1	NA	NA	NA	198	NM_016778	51800	Mm.3295	NM_016778	ENSMUSG00000026278	Bok	matador|mtd	BCL2-related ovarian killer	protein-coding	0.150000	0.741294	
mm_41723.1	chr5	102481359	102481559	+	1	NA	NA	NA	68	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.035000	0.517413	
mm_1304.1	chr1	64690697	64690897	+	1	NA	NA	NA	-138	NR_038009	69941	Mm.69044	NR_038009	ENSMUSG00000087213	2810408I11Rik	-	RIKEN cDNA 2810408I11 gene	ncRNA	0.115000	0.686567	
mm_96572.1	chr11	69045792	69045992	+	1	NA	NA	NA	255	NM_011496	20877	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.055000	0.636816	
mm_91554.1	chr10	39960053	39960253	-	1	NA	NA	NA	0	NM_001173500	100041085	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	0.040000	0.532338	
mm_77880.1	chr9	7277824	7278024	+	1	NA	NA	NA	5410	NM_008607	17386	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0.010000	0.502488	
mm_102413.1	chr11	59201626	59201826	-	1	NA	NA	NA	705	NR_037964	72203	Mm.339566	NR_037964		2610507I01Rik	5033414D05Rik	RIKEN cDNA 2610507I01 gene	ncRNA	0.025000	0.492537	-92(GCCTTTAGAGGA,+,0.00)
mm_141904.1	chr17	34956724	34956924	-	1	NA	NA	NA	2414	NM_010478	15511	Mm.372314	NM_010478	ENSMUSG00000090877	Hspa1b	Hsp70|Hsp70-1|Hsp70.1|hsp68	heat shock protein 1B	protein-coding	0.000000	0.288557	
mm_164632.1	chr17	34039202	34039402	+	1	NA	NA	NA	164	NM_001317722	12815	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.030000	0.572139	
mm_161632.1	chr16	89015171	89015371	+	1	NA	NA	NA	-6	NM_001199334	100040201	Mm.436873	NM_001199334	ENSMUSG00000068075	Gm10229	ENSMUSG00000068075	predicted gene 10229	protein-coding	0.010000	0.457711	-34(GAATATAAAAGG,-,0.00)
mm_99334.1	chr11	101468044	101468244	+	1	NA	NA	NA	-194	NM_009708	11858	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn	Rho family GTPase 2	protein-coding	0.135000	0.810945	
mm_90384.1	chr10	127288440	127288640	+	1	NA	NA	NA	478	NM_001347171	110962	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.050000	0.666667	
mm_11352.1	chr2	30845439	30845639	+	1	NA	NA	NA	172	NM_009116	20204	Mm.1802	NM_009116	ENSMUSG00000039476	Prrx2	Prx2|S8	paired related homeobox 2	protein-coding	0.150000	0.791045	
mm_60785.1	chr7	45566698	45566898	+	1	NA	NA	NA	-3355	NM_009737	12036	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.020000	0.527363	
mm_108605.1	chr12	85473790	85473990	+	1	NA	NA	NA	-11	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.085000	0.631841	-36(TTCTATAAAGGC,-,0.00)
mm_19325.1	chr2	90572030	90572230	-	1	NA	NA	NA	8517	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.010000	0.417910	
mm_110128.1	chr12	26444535	26444735	-	1	NA	NA	NA	11817	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.010000	0.472637	
mm_106133.1	chr11	116466130	116466330	-	1	NA	NA	NA	-11883	NM_001033267	217341	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0.060000	0.601990	
mm_95801.1	chr11	55109518	55109718	+	1	NA	NA	NA	11633	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.015000	0.572139	
mm_2729.1	chr1	128244049	128244249	+	1	NA	NA	NA	-32	NM_026390	67812	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0.095000	0.601990	
mm_59494.1	chr7	27523181	27523381	+	1	NA	NA	NA	20	NM_001033315	233020	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.010000	0.621891	
mm_29171.1	chr3	106513438	106513638	-	1	NA	NA	NA	27498	NM_028110	72121	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.020000	0.452736	
mm_148549.1	chr19	4711304	4711504	+	1	NA	NA	NA	181	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	0.035000	0.512438	
mm_16841.1	chr2	11501956	11502156	-	1	NA	NA	NA	34	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.075000	0.631841	-18(GATCTTAAAAGG,-,0.00),-16(TCTTAAAAGGCC,+,0.00)
mm_15302.1	chr2	155386714	155386914	+	1	NA	NA	NA	4958	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.075000	0.656716	
mm_134408.1	chr16	17673135	17673335	-	1	NA	NA	NA	26765	NM_001166164	72315	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.000000	0.606965	
mm_98359.1	chr11	93886084	93886284	+	1	NA	NA	NA	-23	NM_001346525	103537	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	0.070000	0.691542	
mm_153580.1	chr19	43420579	43420779	-	1	NA	NA	NA	-19757	NM_031396	83674	Mm.329864	NM_031396	ENSMUSG00000025189	Cnnm1	AI846314|Acdp1|CLP-1	cyclin M1	protein-coding	0.015000	0.417910	
mm_95187.1	chr11	42421171	42421371	+	1	NA	NA	NA	-79	NM_001347314	14401	Mm.338723	NM_008070	ENSMUSG00000007653	Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding	0.045000	0.507463	
mm_55356.1	chr6	56901781	56901981	-	1	NA	NA	NA	5	NM_001252374	107569	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0.035000	0.477612	
mm_12397.1	chr2	70094878	70095078	+	1	NA	NA	NA	55852	NM_177376	329421	Mm.99648	NM_177376	ENSMUSG00000042064	Myo3b	A430065P19Rik	myosin IIIB	protein-coding	0.010000	0.462687	
mm_7769.1	chr1	131200072	131200272	-	1	NA	NA	NA	13	NM_001311094	54354	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.025000	0.636816	
mm_98188.1	chr11	87793719	87793919	+	1	NA	NA	NA	35	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.010000	0.507463	
mm_11374.1	chr2	31082775	31082975	+	1	NA	NA	NA	13625	NM_001177650	14269	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.025000	0.557214	
mm_140683.1	chr17	13007621	13007821	-	1	NA	NA	NA	-118	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.075000	0.676617	
mm_163613.1	chr13	51843755	51843955	-	1	NA	NA	NA	-2820	NM_011817	23882	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.020000	0.422886	-93(CCCTTTAGAGGT,+,0.00),-28(GGCTTTATAAAC,-,0.00),-26(CTTTATAAACCA,+,0.00)
mm_171417.1	chr4	132310135	132310335	+	1	NA	NA	NA	-72	NR_034046	100217440		NR_034046		Snora61	MBI-164	small nucleolar RNA, H/ACA box 61	snoRNA	0.030000	0.512438	
mm_152249.1	chr19	8714345	8714545	-	1	NA	NA	NA	-548	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.005000	0.412935	
mm_140038.1	chr17	74395523	74395723	+	1	NA	NA	NA	15	NM_144798	210148	Mm.243943	NM_144798	ENSMUSG00000024069	Slc30a6	9530029F08Rik|ZnT6	solute carrier family 30 (zinc transporter), member 6	protein-coding	0.080000	0.606965	
mm_124665.1	chr15	6380520	6380720	+	1	NA	NA	NA	-6128	NM_023118	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.010000	0.393035	
mm_132058.1	chr16	29839267	29839467	+	1	NA	NA	NA	139757	NR_037689	328657	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.035000	0.537313	
mm_14830.1	chr2	147072498	147072698	+	1	NA	NA	NA	12747	NM_023504	228731	Mm.315498	NM_023504	ENSMUSG00000054160	Nkx2-4	1700001P03Rik|Nkx-2.4|tinman	NK2 homeobox 4	protein-coding	0.005000	0.447761	
mm_72344.1	chr8	79639312	79639512	+	1	NA	NA	NA	-264	NM_001256033	73945	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.120000	0.686567	
mm_93512.1	chr10	115222608	115222808	-	1	NA	NA	NA	28785	NM_025706	66687	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0.010000	0.373134	-77(GCATTTATAGAT,+,0.00)
mm_129152.1	chr15	76231950	76232150	-	1	NA	NA	NA	-672	NM_011117	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.090000	0.661692	72(CTATTTATAGGC,+,0.00)
mm_157605.1	chrX	53643675	53643875	-	1	NA	NA	NA	-12	NM_024170	66158	Mm.391252	NM_024170	ENSMUSG00000067925	Cxx1a	1110012O05Rik|Mar8.2A/B|Mart8b	CAAX box 1A	protein-coding	0.045000	0.552239	
mm_106855.1	chr12	8008992	8009192	+	1	NA	NA	NA	31415	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.402985	
mm_66256.1	chr7	35647020	35647220	-	1	NA	NA	NA	362	NM_019746	56330	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0.110000	0.706468	
mm_115292.1	chr13	111977921	111978121	+	1	NA	NA	NA	110085	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.060000	0.577114	
mm_84589.1	chr9	70036593	70036793	-	1	NA	NA	NA	1395	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.015000	0.447761	84(CCTTTTAAAATC,+,0.00)
mm_10631.1	chr2	19909713	19909913	+	1	NA	NA	NA	251751	NM_027715	71198	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	0.100000	0.721393	
mm_41949.1	chr5	105734420	105734620	+	1	NA	NA	NA	33710	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.000000	0.318408	
mm_152658.1	chr19	12795389	12795589	-	1	NA	NA	NA	634	NR_024093	664779	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0.145000	0.805970	
mm_171694.1	chr4	6649086	6649286	+	1	NA	NA	NA	-194915	NM_010945	18201	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.030000	0.507463	
mm_73982.1	chr8	120537409	120537609	+	1	NA	NA	NA	100	NM_001145896	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.095000	0.701493	
mm_146945.1	chr18	32462365	32462565	-	1	NA	NA	NA	-84181	NR_045403	402767	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.030000	0.537313	
mm_97299.1	chr11	76494629	76494829	+	1	NA	NA	NA	-234	NM_001346670	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.110000	0.711443	
mm_116884.1	chr13	55190111	55190311	-	1	NA	NA	NA	-19571	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.050000	0.567164	
mm_119691.1	chr14	53553895	53554095	+	1	NA	NA	NA	699934	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.477612	
mm_46569.1	chr5	107178288	107178488	-	1	NA	NA	NA	111207	NM_011578	21814	Mm.200775	NM_011578	ENSMUSG00000029287	Tgfbr3	1110036H20Rik|AU015626|AW215636|TBRIII	transforming growth factor, beta receptor III	protein-coding	0.000000	0.442786	
mm_136918.1	chr17	13760451	13760651	+	1	NA	NA	NA	10	NM_010806	17356	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.240000	0.885572	
mm_149025.1	chr19	8764932	8765132	+	1	NA	NA	NA	-5964	NM_025791	66836	Mm.440071	NM_025791	ENSMUSG00000010097	Tmem223	0610006I08Rik	transmembrane protein 223	protein-coding	0.015000	0.552239	
mm_149486.1	chr19	11810579	11810779	+	1	NA	NA	NA	8724	NM_001286543	20908	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.000000	0.477612	
mm_136479.1	chr16	96001615	96001815	-	1	NA	NA	NA	-10812	NM_019537	56088	Mm.396248	NM_019537	ENSMUSG00000022913	Psmg1	AW552102|Dscr2	proteasome (prosome, macropain) assembly chaperone 1	protein-coding	0.005000	0.398010	32(CCTTATATATCT,+,0.00)
mm_66570.1	chr7	45321640	45321840	-	1	NA	NA	NA	-3218	NR_110499	100040970	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	ENSMUSG00000046721|Gm9811	ribosomal protein L14, pseudogene 1	pseudo	0.020000	0.492537	
mm_17149.1	chr2	25211251	25211451	-	1	NA	NA	NA	138	NM_021393	58202	Mm.116418	NM_021393	ENSMUSG00000013465	Nelfb	A730008L03Rik|AB041607|AI663983|Cobra1|Nelf-b	negative elongation factor complex member B	protein-coding	0.085000	0.691542	
mm_17219.1	chr2	25493870	25494070	-	1	NA	NA	NA	-59	NM_029958	77701	Mm.99123	NM_029958	ENSMUSG00000026943	Lcn12	9230102M18Rik	lipocalin 12	protein-coding	0.015000	0.557214	
mm_961.1	chr1	57995967	57996167	+	1	NA	NA	NA	93	NM_199007	68549	Mm.32800	NM_199007	ENSMUSG00000026039	Sgol2a	1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Tripin	shugoshin-like 2a (S. pombe)	protein-coding	0.090000	0.621891	
mm_164845.1	chr18	44073479	44073679	+	1	NA	NA	NA	2186	NM_001013797	433180	Mm.57302	NM_001013797	ENSMUSG00000055095	Spink6	EG433180	serine peptidase inhibitor, Kazal type 6	protein-coding	0.005000	0.422886	
mm_42217.1	chr5	113137207	113137407	+	1	NA	NA	NA	1278	NM_001347397	243219	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.010000	0.557214	
mm_16786.1	chr2	9952545	9952745	-	1	NA	NA	NA	-63105	NR_040511	77682	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA	0.020000	0.517413	-59(CTCTATAAACCC,+,0.00)
mm_164481.1	chr16	74306433	74306633	-	1	NA	NA	NA	35534	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.000000	0.283582	
mm_34170.1	chr4	140038256	140038456	+	1	NA	NA	NA	-70330	NM_173427	242721	Mm.60400	NM_173427	ENSMUSG00000078234	Klhdc7a	B230308G19Rik	kelch domain containing 7A	protein-coding	0.015000	0.532338	-36(CAATATAAAAGG,-,0.00)
mm_73778.1	chr8	116921644	116921844	+	1	NA	NA	NA	4	NM_028131	72155	Mm.23185	NM_028131	ENSMUSG00000031756	Cenpn	2610510J17Rik|AI426416|AW545024	centromere protein N	protein-coding	0.105000	0.701493	
mm_73181.1	chr8	95081096	95081296	+	1	NA	NA	NA	-5	NM_028805	74187	Mm.28382	NM_028805	ENSMUSG00000031787	Katnb1	2410003J24Rik|KAT	katanin p80 (WD40-containing) subunit B 1	protein-coding	0.050000	0.587065	
mm_101303.1	chr11	22342170	22342370	-	1	NA	NA	NA	-55475	NM_001252515	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0.005000	0.472637	
mm_139845.1	chr17	69382705	69382905	+	1	NA	NA	NA	-1173	NM_009547	22666	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0.140000	0.741294	
mm_170871.1	chr2	20651666	20651866	+	1	NA	NA	NA	132253	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.005000	0.507463	
mm_80854.1	chr9	98424829	98425029	+	1	NA	NA	NA	1968	NM_011254	19659	Mm.279741	NM_011254	ENSMUSG00000046402	Rbp1	CRBPI|Crbp|Rbp-1	retinol binding protein 1, cellular	protein-coding	0.085000	0.641791	
mm_47754.1	chr5	131289948	131290148	-	1	NA	NA	NA	17474	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.015000	0.427861	
mm_56816.1	chr6	116716544	116716744	-	1	NA	NA	NA	114	NM_178768	319776	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.015000	0.626866	
mm_107227.1	chr12	26476114	26476314	+	1	NA	NA	NA	6999	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.000000	0.457711	
mm_4962.1	chr1	191267031	191267231	+	1	NA	NA	NA	50987	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.015000	0.527363	
mm_46097.1	chr5	92347209	92347409	-	1	NA	NA	NA	1580	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.020000	0.542289	-78(AGGTCTAAAAGG,-,0.00)
mm_43135.1	chr5	125389249	125389449	+	1	NA	NA	NA	668	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.105000	0.661692	
mm_18202.1	chr2	46360342	46360542	-	1	NA	NA	NA	663837	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.005000	0.402985	
mm_48015.1	chr5	136169895	136170095	-	1	NA	NA	NA	661	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.010000	0.353234	
mm_62723.1	chr7	110773572	110773772	+	1	NA	NA	NA	1068	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.020000	0.572139	
mm_128502.1	chr15	52753337	52753537	-	1	NA	NA	NA	40992	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.000000	0.522388	
mm_146638.1	chr18	10610207	10610407	-	1	NA	NA	NA	45	NM_001081222	77805	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	0.145000	0.716418	
mm_11321.1	chr2	30415551	30415751	+	1	NA	NA	NA	97	NM_007760	12908	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.110000	0.716418	
mm_154265.1	chr19	60771582	60771782	-	1	NA	NA	NA	2703	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.005000	0.368159	-36(CCTTTAATAAAG,+,0.00)
mm_64611.1	chr7	3296967	3297167	-	1	NA	NA	NA	4039	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.045000	0.582090	
mm_161920.1	chr18	70530238	70530438	-	1	NA	NA	NA	-17	NM_001289515	26447	Mm.244352	NM_011972	ENSMUSG00000038425	Poli	Rad30b	polymerase (DNA directed), iota	protein-coding	0.085000	0.651741	
mm_44893.1	chr5	35102327	35102527	-	1	NA	NA	NA	3270	NM_013587	16976	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.015000	0.542289	
mm_150033.1	chr19	29376073	29376273	+	1	NA	NA	NA	8735	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.030000	0.457711	
mm_10423.1	chr2	13581543	13581743	+	1	NA	NA	NA	7332	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.005000	0.318408	
mm_11290.1	chr2	30067073	30067273	+	1	NA	NA	NA	699	NM_001204875	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.110000	0.736318	
mm_117615.1	chr13	91741656	91741856	-	1	NA	NA	NA	116	NR_015501	373852	Mm.466817	NR_015501	ENSMUSG00000074782	4833422C13Rik	-	RIKEN cDNA 4833422C13 gene	ncRNA	0.055000	0.626866	
mm_108829.1	chr12	95750150	95750350	+	1	NA	NA	NA	58024	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.005000	0.348259	
mm_106480.1	chr11	120164558	120164758	-	1	NA	NA	NA	-13307	NM_001164798	72055	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0.015000	0.562189	-13(ATTTTTAAAAGG,-,0.00),-12(TTTTTAAAAGGC,+,0.00)
mm_135620.1	chr16	52271967	52272167	-	1	NA	NA	NA	181014	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.303483	
mm_125709.1	chr15	68395233	68395433	+	1	NA	NA	NA	-54044	NR_029718	387228		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0.005000	0.407960	
mm_51222.1	chr6	71371262	71371462	+	1	NA	NA	NA	-2065	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.015000	0.517413	-33(CACTTTATATGC,-,0.00)
mm_141921.1	chr17	35000722	35000922	-	1	NA	NA	NA	-76	NM_033075	110956	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0.095000	0.671642	
mm_79132.1	chr9	47550279	47550479	+	1	NA	NA	NA	20027	NM_018770	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.015000	0.412935	-8(TTTTTTATGGTG,+,0.00)
mm_58511.1	chr7	4129081	4129281	+	1	NA	NA	NA	7745	NR_033548	100037396	Mm.447887	NR_033548	ENSMUSG00000085886	D030047H15Rik	Gm15924|OTTMUSG00000027889	RIKEN cDNA D030047H15 gene	ncRNA	0.020000	0.497512	
mm_139714.1	chr17	57462806	57463006	+	1	NA	NA	NA	82408	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.000000	0.343284	
mm_8317.1	chr1	144330256	144330456	-	1	NA	NA	NA	-81252	NM_015811	50778	Mm.103701	NM_015811	ENSMUSG00000026358	Rgs1	BL34	regulator of G-protein signaling 1	protein-coding	0.005000	0.363184	
mm_84719.1	chr9	73968850	73969050	-	1	NA	NA	NA	-35383	NM_001081153	208898	Mm.41035	NM_001081153	ENSMUSG00000062151	Unc13c	1500037O19Rik|AU019458|D9Ertd414e|Munc13-3|Unc13h3	unc-13 homolog C (C. elegans)	protein-coding	0.025000	0.587065	
mm_120059.1	chr14	56811889	56812089	+	1	NA	NA	NA	-273	NM_144842	219105	Mm.473172	NM_144842	ENSMUSG00000040123	Zmym5	9830124H08Rik	zinc finger, MYM-type 5	protein-coding	0.120000	0.810945	
mm_97738.1	chr11	80442601	80442801	+	1	NA	NA	NA	14086	NM_178616	69077	Mm.260539	NM_178616	ENSMUSG00000017428	Psmd11	1700089D09Rik|1810019E17Rik|2610024G20Rik|2810055C24Rik|C78232|P44.5|S9	proteasome (prosome, macropain) 26S subunit, non-ATPase, 11	protein-coding	0.005000	0.353234	-34(TCATTTATAAGG,-,0.00)
mm_102013.1	chr11	51606776	51606976	-	1	NA	NA	NA	5	NM_001048061	15384	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.095000	0.582090	
mm_150686.1	chr19	42091451	42091651	+	1	NA	NA	NA	1116	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	0.015000	0.432836	-40(AGCTTTAAAAAC,-,0.00),-38(CTTTAAAAACAC,+,0.00)
mm_59844.1	chr7	29768453	29768653	+	1	NA	NA	NA	1	NM_023750	74352	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	0.040000	0.517413	-11(CACTATAAATGC,-,0.00)
mm_94664.1	chr11	17211782	17211982	+	1	NA	NA	NA	-11	NM_178909	103784	Mm.298132	NM_178909	ENSMUSG00000078970	Wdr92	AI553587|HZGJ	WD repeat domain 92	protein-coding	0.035000	0.522388	
mm_45761.1	chr5	86891089	86891289	-	1	NA	NA	NA	15748	NM_153598	100727	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding	0.000000	0.422886	
mm_48908.1	chr6	3988965	3989165	+	1	NA	NA	NA	-207	NR_138566	21789	Mm.25612	NM_009364	ENSMUSG00000029664	Tfpi2	AV000670|PP5/TFPI-2	tissue factor pathway inhibitor 2	protein-coding	0.005000	0.432836	
mm_135911.1	chr16	67584038	67584238	-	1	NA	NA	NA	36770	NM_001347247	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.005000	0.328358	-97(ACATTTAAAAGC,-,0.00)
mm_102636.1	chr11	62550860	62551060	-	1	NA	NA	NA	-211	NM_011664	22187	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.090000	0.651741	
mm_61557.1	chr7	79499956	79500156	+	1	NA	NA	NA	30	NR_040313	101694	Mm.41661	NR_040311	ENSMUSG00000097023	Mir9-3hg	AI854517	Mir9-3 host gene	ncRNA	0.155000	0.796020	
mm_161476.1	chr15	82058914	82059114	+	1	NA	NA	NA	-137	NM_001166475	328573	Mm.399189	NM_001166475	ENSMUSG00000075524	4930407I10Rik	Gm747	RIKEN cDNA 4930407I10 gene	protein-coding	0.000000	0.522388	
mm_153725.1	chr19	44407517	44407717	-	1	NA	NA	NA	92	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.035000	0.582090	-33(GCCGATAAAAGG,-,0.00),23(CCCTTTAAAATC,+,0.00),24(CCTTTAAAATCC,+,0.00)
mm_13439.1	chr2	105126658	105126858	+	1	NA	NA	NA	229	NM_144783	22431	Mm.389339	NM_144783	ENSMUSG00000016458	Wt1	D630046I19Rik|Wt-1	Wilms tumor 1 homolog	protein-coding	0.090000	0.706468	
mm_142335.1	chr17	43557842	43558042	-	1	NA	NA	NA	-10509	NM_013737	27226	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.000000	0.542289	
mm_17718.1	chr2	32387048	32387248	-	1	NA	NA	NA	591	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.030000	0.547264	
mm_136936.1	chr17	14226460	14226660	+	1	NA	NA	NA	-22729	NM_172826	240025	Mm.79993	NM_172826	ENSMUSG00000048826	Dact2	2900084M21Rik|A630024E20|Dpr2|Frd2|dapper2	dishevelled-binding antagonist of beta-catenin 2	protein-coding	0.010000	0.512438	
mm_105658.1	chr11	107337477	107337677	-	1	NA	NA	NA	133143	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.035000	0.537313	
mm_79053.1	chr9	46229765	46229965	+	1	NA	NA	NA	1235	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.025000	0.542289	
mm_170177.1	chr17	5798587	5798787	+	1	NA	NA	NA	30	NR_045081	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.035000	0.562189	
mm_81898.1	chr9	119895083	119895283	+	1	NA	NA	NA	288	NM_026236	67561	Mm.104789	NM_026236	ENSMUSG00000032512	Wdr48	8430408H12Rik|Uaf1|mKIAA1449	WD repeat domain 48	protein-coding	0.165000	0.805970	
mm_31090.1	chr4	41639282	41639482	+	1	NA	NA	NA	920	NM_027147	69638	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.010000	0.562189	
mm_111835.1	chr12	107912126	107912326	-	1	NA	NA	NA	91188	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.030000	0.582090	
mm_38899.1	chr4	149856373	149856573	-	1	NA	NA	NA	-82206	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.035000	0.577114	
mm_134186.1	chr16	10963533	10963733	-	1	NA	NA	NA	29488	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.015000	0.507463	12(CCCTTTAAGGCT,+,0.00),13(CCTTTAAGGCTG,+,0.00),79(GGCTATTTATGC,-,0.00)
mm_35762.1	chr4	46129257	46129457	-	1	NA	NA	NA	9118	NM_173033	272027	Mm.331588	NM_173033	ENSMUSG00000035495	Tstd2	3010020C06	thiosulfate sulfurtransferase (rhodanese)-like domain containing 2	protein-coding	0.020000	0.592040	
mm_167010.1	chr7	58308128	58308328	-	1	NA	NA	NA	-349974	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.005000	0.378109	
mm_42068.1	chr5	109923549	109923749	+	1	NA	NA	NA	-9914	NR_040366	100642166		NR_040366	ENSMUSG00000090015	Gm15446	OTTMUSG00000022004	predicted gene 15446	ncRNA	0.030000	0.577114	
mm_102307.1	chr11	55608453	55608653	-	1	NA	NA	NA	-355	NM_020492	14654	Mm.89320	NM_020492	ENSMUSG00000000263	Glra1	nmf11|oscillator|ot|spasmodic|spd	glycine receptor, alpha 1 subunit	protein-coding	0.030000	0.552239	
mm_2938.1	chr1	132299243	132299443	+	1	NA	NA	NA	717	NM_144810	213417	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0.050000	0.636816	
mm_94492.1	chr11	6687920	6688120	+	1	NA	NA	NA	-27784	NR_028586	100041311	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	OTTMUSG00000005125|OTTMUSG00000005127	predicted gene 11978	pseudo	0.010000	0.512438	-35(AGCTATAAAAGC,-,0.00)
mm_757.1	chr1	43933587	43933787	+	1	NA	NA	NA	-307	NM_001310540	22019	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.095000	0.616915	
mm_43906.1	chr5	144255691	144255891	+	1	NA	NA	NA	566	NM_018772	55950	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.080000	0.691542	
mm_163652.1	chr13	69534458	69534658	-	1	NA	NA	NA	-694	NM_001169131	210106	Mm.315959	NM_198600	ENSMUSG00000034575	Papd7	LAK-1|POLK|Pols|TRF4|TRF4-1	PAP associated domain containing 7	protein-coding	0.180000	0.825871	
mm_41676.1	chr5	99687636	99687836	+	1	NA	NA	NA	41324	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.005000	0.363184	
mm_56722.1	chr6	115592457	115592657	-	1	NA	NA	NA	19	NM_001101431	70291	Mm.133694	NM_001101431	ENSMUSG00000068011	Mkrn2os	2510049J12Rik	makorin, ring finger protein 2, opposite strand	protein-coding	0.010000	0.482587	
mm_19795.1	chr2	109913211	109913411	-	1	NA	NA	NA	8	NR_033473	100038454	Mm.365649	NR_033473	ENSMUSG00000063751	Platr8	Gm13939|OTTMUSG00000015136	pluripotency associated transcript 8	ncRNA	0.010000	0.378109	
mm_156753.1	chrX	160391458	160391658	+	1	NA	NA	NA	868	NM_001290445	237175	Mm.213016	NM_178712	ENSMUSG00000031298	Adgrg2	AW212196|B830041D06Rik|Gpr64|Me6	adhesion G protein-coupled receptor G2	protein-coding	0.010000	0.497512	
mm_52873.1	chr6	122342581	122342781	+	1	NA	NA	NA	-2454	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.015000	0.472637	
mm_51759.1	chr6	87810875	87811075	+	1	NA	NA	NA	804	NM_001039394	69834	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0.065000	0.616915	-78(GTCCATAAAAGA,-,0.00)
mm_56658.1	chr6	113435656	113435856	-	1	NA	NA	NA	-1	NM_178373	14311	Mm.10026	NM_178373	ENSMUSG00000030278	Cidec	CIDE-3|Fsp27	cell death-inducing DFFA-like effector c	protein-coding	0.020000	0.606965	
mm_63688.1	chr7	130574864	130575064	+	1	NA	NA	NA	-2520	NM_001004468	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.010000	0.572139	
mm_103636.1	chr11	78951075	78951275	-	1	NA	NA	NA	25884	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.025000	0.582090	
mm_10225.1	chr2	6294246	6294446	+	1	NA	NA	NA	-28411	NM_001080548	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.025000	0.492537	-34(GGCCATAAATAG,-,0.00),77(GCTTTTATATGT,+,0.00)
mm_35664.1	chr4	43562167	43562367	-	1	NA	NA	NA	316	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.115000	0.706468	
mm_19126.1	chr2	80129067	80129267	-	1	NA	NA	NA	-196	NM_016744	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.040000	0.472637	
mm_45833.1	chr5	87694609	87694809	-	1	NA	NA	NA	4716	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.522388	
mm_127409.1	chr15	101254392	101254592	+	1	NA	NA	NA	-12354	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.065000	0.686567	
mm_82932.1	chr9	35185365	35185565	-	1	NA	NA	NA	-9478	NM_027030	69305	Mm.229110	NM_027030	ENSMUSG00000032040	Dcps	1700001E16Rik|AA408441	decapping enzyme, scavenger	protein-coding	0.005000	0.343284	14(ATCTTTTAAAGC,-,0.00),15(TCTTTTAAAGCT,+,0.00)
mm_45141.1	chr5	49112495	49112695	-	1	NA	NA	NA	173064	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.005000	0.402985	
mm_146706.1	chr18	13972087	13972287	-	1	NA	NA	NA	546	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.045000	0.477612	
mm_78109.1	chr9	20581341	20581541	+	1	NA	NA	NA	113	NM_172919	244721	Mm.86627	NM_172919	ENSMUSG00000058192	Zfp846	2210010B09Rik|9130221F13|Znf846	zinc finger protein 846	protein-coding	0.090000	0.651741	
mm_95735.1	chr11	54644982	54645182	+	1	NA	NA	NA	48936	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.000000	0.398010	68(CTCTTTAAAGGG,+,0.00),68(CTCTTTAAAGGG,-,0.00),69(TCTTTAAAGGGC,+,0.00)
mm_148192.1	chr18	79021061	79021261	-	1	NA	NA	NA	88230	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.015000	0.452736	
mm_60769.1	chr7	45554855	45555055	+	1	NA	NA	NA	27	NM_025330	66065	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.030000	0.606965	
mm_68787.1	chr7	123312388	123312588	-	1	NA	NA	NA	57427	NM_001122643	70497	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.000000	0.482587	
mm_53597.1	chr6	138141493	138141693	+	1	NA	NA	NA	-1	NM_001347489	56615	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.010000	0.442786	
mm_22062.1	chr2	168669968	168670168	-	1	NA	NA	NA	-29309	NR_105971	102466784		NR_105971	ENSMUSG00000105496	Mir7004	mmu-mir-7004	microRNA 7004	ncRNA	0.035000	0.606965	
mm_23050.1	chr3	35545782	35545982	+	1	NA	NA	NA	120281	NR_040748	625963	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	0.015000	0.477612	
mm_168333.1	chr11	118304380	118304580	+	1	NA	NA	NA	-14236	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.030000	0.532338	
mm_49473.1	chr6	29526571	29526771	+	1	NA	NA	NA	46	NM_012057	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.155000	0.825871	
mm_145592.1	chr18	60985967	60986167	+	1	NA	NA	NA	22513	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.015000	0.537313	
mm_144939.1	chr18	37751527	37751727	+	1	NA	NA	NA	-152	NM_033579	93704	Mm.247203	NM_033579	ENSMUSG00000104063	Pcdhgb7	-	protocadherin gamma subfamily B, 7	protein-coding	0.050000	0.577114	
mm_136631.1	chr17	5685583	5685783	+	1	NA	NA	NA	-112974	NR_045081	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.040000	0.527363	
mm_140796.1	chr17	21463355	21463555	-	1	NA	NA	NA	13081	NM_009558	22709	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	0.010000	0.388060	
mm_149144.1	chr19	9004333	9004533	+	1	NA	NA	NA	-13471	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.000000	0.447761	
mm_51845.1	chr6	90333188	90333388	+	1	NA	NA	NA	-1	NM_001347329	243537	Mm.335669	NM_144940	ENSMUSG00000034456	Uroc1	AI265605|BC022133	urocanase domain containing 1	protein-coding	0.015000	0.631841	
mm_58283.1	chr6	145862706	145862906	-	1	NA	NA	NA	2614	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.055000	0.572139	
mm_55863.1	chr6	83456450	83456650	-	1	NA	NA	NA	-158	NM_001347313	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.160000	0.815920	
mm_111280.1	chr12	85350483	85350683	-	1	NA	NA	NA	-11221	NM_145138	217718	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.005000	0.393035	
mm_37258.1	chr4	118437136	118437336	-	1	NA	NA	NA	107	NM_023223	107995	Mm.261764	NM_023223	ENSMUSG00000006398	Cdc20	2310042N09Rik|C87100|p55CDC	cell division cycle 20	protein-coding	0.105000	0.641791	
mm_160473.1	chr8	117349067	117349267	+	1	NA	NA	NA	-3	NM_028941	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.015000	0.532338	
mm_158292.1	chrX	112698550	112698750	-	1	NA	NA	NA	1	NM_181579	69693	Mm.34964	NM_181579	ENSMUSG00000034607	Pof1b	2310066B14Rik	premature ovarian failure 1B	protein-coding	0.015000	0.527363	
mm_70584.1	chr8	13167813	13168013	+	1	NA	NA	NA	8752	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.025000	0.522388	
mm_59518.1	chr7	27592683	27592883	+	1	NA	NA	NA	1231	NM_001110208	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.020000	0.522388	49(GTGTTTTAAGGG,-,0.00)
mm_86338.1	chr9	123215879	123216079	-	1	NA	NA	NA	59	NM_133974	109332	Mm.27519	NM_133974	ENSMUSG00000035498	Cdcp1	9030022E12Rik|AA409659|E030027H19Rik	CUB domain containing protein 1	protein-coding	0.115000	0.736318	
mm_106908.1	chr12	8015720	8015920	+	1	NA	NA	NA	38143	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.000000	0.358209	62(GCTTTTAAATCC,+,0.00)
mm_136606.1	chr17	5242895	5243095	+	1	NA	NA	NA	175772	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.030000	0.592040	
mm_34.1	chr1	6249608	6249808	+	1	NA	NA	NA	35046	NM_009826	12421	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	0.005000	0.318408	
mm_158695.1	chrX	161777751	161777951	-	1	NA	NA	NA	60298	NM_198409	24004	Mm.328503	NM_198409	ENSMUSG00000043518	Rai2	3f8	retinoic acid induced 2	protein-coding	0.030000	0.587065	
mm_84399.1	chr9	65552261	65552461	-	1	NA	NA	NA	27726	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.010000	0.507463	
mm_37298.1	chr4	119218074	119218274	-	1	NA	NA	NA	43	NM_029198	75180	Mm.179335	NM_029198	ENSMUSG00000028642	Tmem269	4930538K18Rik	transmembrane protein 269	protein-coding	0.015000	0.562189	
mm_41759.1	chr5	102859950	102860150	+	1	NA	NA	NA	15043	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.010000	0.427861	
mm_167862.1	chrX	19703922	19704122	+	1	NA	NA	NA	-355548	NM_021715	60322	Mm.44827	NM_021715	ENSMUSG00000037347	Chst7	2600013M07Rik|C6ST-2|GST5|Gn6st-4|glcNAc6ST-4	carbohydrate (N-acetylglucosamino) sulfotransferase 7	protein-coding	0.010000	0.462687	29(GCCTCTATGAGG,-,0.00)
mm_21610.1	chr2	164254616	164254816	-	1	NA	NA	NA	1927	NM_173377	329557	Mm.118769	NM_173377	ENSMUSG00000050383	Svs3b	9530004A22Rik	seminal vesicle secretory protein 3B	protein-coding	0.005000	0.502488	
mm_153305.1	chr19	38022643	38022843	-	1	NA	NA	NA	20834	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.005000	0.398010	
mm_117561.1	chr13	85258267	85258467	-	1	NA	NA	NA	31119	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.015000	0.393035	
mm_81972.1	chr9	121128409	121128609	+	1	NA	NA	NA	148663	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.005000	0.447761	
mm_136435.1	chr16	94370907	94371107	-	1	NA	NA	NA	8	NM_019543	56176	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0.120000	0.716418	
mm_127440.1	chr15	101270274	101270474	+	1	NA	NA	NA	3528	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.060000	0.621891	
mm_104593.1	chr11	97048276	97048476	-	1	NA	NA	NA	-2252	NM_001310509	71240	Mm.190450	NM_001081434	ENSMUSG00000038534	Osbpl7	4933437E18Rik	oxysterol binding protein-like 7	protein-coding	0.020000	0.527363	
mm_157699.1	chrX	60727395	60727595	-	1	NA	NA	NA	165935	NM_009237	20675	Mm.35784	NM_009237	ENSMUSG00000045179	Sox3	Sox-3	SRY (sex determining region Y)-box 3	protein-coding	0.015000	0.437811	
mm_18648.1	chr2	69585929	69586129	-	1	NA	NA	NA	38	NM_001081088	14725	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	0.085000	0.656716	
mm_81450.1	chr9	109816529	109816729	+	1	NA	NA	NA	2	NM_183136	78709	Mm.99613	NM_183136	ENSMUSG00000050074	Spink8	C630041L24Rik	serine peptidase inhibitor, Kazal type 8	protein-coding	0.020000	0.527363	
mm_57930.1	chr6	134566768	134566968	-	1	NA	NA	NA	45	NM_008514	16974	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	0.165000	0.761194	
mm_169153.1	chr13	63222815	63223015	-	1	NA	NA	NA	-17114	NR_110520	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.045000	0.497512	-40(CTCCTTAAGAGG,-,0.00)
mm_115337.1	chr13	112488492	112488692	+	1	NA	NA	NA	24522	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.010000	0.393035	-34(GTATATTAAAGC,-,0.00)
mm_34688.1	chr4	151933611	151933811	+	1	NA	NA	NA	-9	NM_172704	230935	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	0.115000	0.676617	
mm_152919.1	chr19	28009923	28010123	-	1	NA	NA	NA	1143	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.015000	0.522388	
mm_56180.1	chr6	88225582	88225782	-	1	NA	NA	NA	3414	NM_019964	56691	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	0.005000	0.567164	
mm_83711.1	chr9	50746385	50746585	-	1	NA	NA	NA	36	NM_025865	66952	Mm.273375	NM_025865	ENSMUSG00000032062	2310030G06Rik	2610024D04Rik|AV017521	RIKEN cDNA 2310030G06 gene	protein-coding	0.050000	0.597015	
mm_1538.1	chr1	72851942	72852142	+	1	NA	NA	NA	22823	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.035000	0.582090	
mm_26141.1	chr3	138000789	138000989	+	1	NA	NA	NA	-19340	NM_001310753	26377	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.015000	0.532338	
mm_35549.1	chr4	41507658	41507858	-	1	NA	NA	NA	6	NM_028624	73721	Mm.45614	NM_028624	ENSMUSG00000028441	1110017D15Rik	Cbe1|Smrp1	RIKEN cDNA 1110017D15 gene	protein-coding	0.040000	0.582090	
mm_120831.1	chr14	75176695	75176895	+	1	NA	NA	NA	40370	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.000000	0.447761	-34(GTCCTTATAAAG,-,0.00),-32(CCTTATAAAGAC,+,0.00)
mm_161171.1	chr13	38036867	38037067	-	1	NA	NA	NA	-22	NM_024242	71340	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1 (yeast)	protein-coding	0.080000	0.631841	
mm_106795.1	chr12	4843268	4843468	+	1	NA	NA	NA	65	NM_001170858	238037	Mm.146087	NM_173416	ENSMUSG00000051721	BC068281	A430092C04|Wdcp	cDNA sequence BC068281	protein-coding	0.085000	0.582090	
mm_168314.1	chr11	109011887	109012087	-	1	NA	NA	NA	91638	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.085000	0.616915	
mm_49303.1	chr6	17749119	17749319	+	1	NA	NA	NA	49	NM_022332	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.045000	0.597015	
mm_91632.1	chr10	42182349	42182549	-	1	NA	NA	NA	94293	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.025000	0.393035	-7(TTTTTTAAAGCG,+,0.00)
mm_65454.1	chr7	25463400	25463600	-	1	NA	NA	NA	14125	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.000000	0.437811	
mm_97321.1	chr11	76904441	76904641	+	1	NA	NA	NA	-4	NM_025655	66601	Mm.25138	NM_025655	ENSMUSG00000020839	Tmigd1	2010002A20Rik|Tmigd	transmembrane and immunoglobulin domain containing 1	protein-coding	0.005000	0.447761	
mm_164231.1	chr15	89384764	89384964	+	1	NA	NA	NA	-2027	NM_001160178	546648	Mm.478787	NM_001160178	ENSMUSG00000091680	Klhdc7b	EG546648|Gm306	kelch domain containing 7B	protein-coding	0.015000	0.621891	
mm_114831.1	chr13	92355115	92355315	+	1	NA	NA	NA	-212	NM_010829	17686	Mm.343101	NM_010829	ENSMUSG00000014850	Msh3	D13Em1|Rep-3|Rep3	mutS homolog 3	protein-coding	0.075000	0.577114	
mm_120614.1	chr14	70242353	70242553	+	1	NA	NA	NA	-34782	NM_011366	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.000000	0.303483	
mm_23717.1	chr3	69005363	69005563	+	1	NA	NA	NA	491	NM_133786	70099	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	0.065000	0.631841	
mm_46586.1	chr5	107721018	107721218	-	1	NA	NA	NA	3225	NM_010278	14581	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.075000	0.646766	
mm_131577.1	chr16	18392537	18392737	+	1	NA	NA	NA	74	NM_001272032	11877	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velo-cardio-facial syndrome	protein-coding	0.110000	0.726368	
mm_123412.1	chr14	64085308	64085508	-	1	NA	NA	NA	-19	NM_001081063	71037	Mm.19977	NM_001081063	ENSMUSG00000034623	Prss55	4933401F05Rik	protease, serine 55	protein-coding	0.005000	0.522388	
mm_122853.1	chr14	54781843	54782043	-	1	NA	NA	NA	-57	NM_016972	50934	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	0.090000	0.621891	
mm_124744.1	chr15	6599623	6599823	+	1	NA	NA	NA	19876	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.005000	0.363184	
mm_60814.1	chr7	45699705	45699905	+	1	NA	NA	NA	-162	NM_009800	12348	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	0.020000	0.582090	
mm_42310.1	chr5	114853564	114853764	+	1	NA	NA	NA	-50	NM_026263	67593	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	0.010000	0.507463	
mm_101723.1	chr11	42182357	42182557	-	1	NA	NA	NA	473	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding	0.030000	0.442786	
mm_123058.1	chr14	55660194	55660394	-	1	NA	NA	NA	214	NM_023397	67881	Mm.24601	NM_023397	ENSMUSG00000002329	Mdp1	1810034K20Rik|AI035604	magnesium-dependent phosphatase 1	protein-coding	0.050000	0.532338	-26(GATTTTATAAGG,-,0.00)
mm_33246.1	chr4	127035573	127035773	+	1	NA	NA	NA	14372	NM_023603	71514	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|OTTMUSG00000009329|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.000000	0.273632	
mm_34050.1	chr4	138250343	138250543	+	1	NA	NA	NA	32	NM_001099631	230863	Mm.482408	NM_001099631	ENSMUSG00000045349	Sh2d5	BC036961	SH2 domain containing 5	protein-coding	0.110000	0.771144	
mm_135837.1	chr16	58523684	58523884	-	1	NA	NA	NA	-472	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.015000	0.492537	
mm_35805.1	chr4	46648686	46648886	-	1	NA	NA	NA	1413	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	0.010000	0.452736	
mm_86122.1	chr9	116173004	116173204	-	1	NA	NA	NA	2259	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.010000	0.338308	-50(GGCTTTAAATAG,-,0.00),68(GTTTTTAAAGAT,+,0.00)
mm_145531.1	chr18	60774581	60774781	+	1	NA	NA	NA	85	NM_020600	20044	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.090000	0.636816	
mm_70991.1	chr8	27368700	27368900	+	1	NA	NA	NA	89	NM_173212	108043	Mm.110444	NM_027454	ENSMUSG00000031492	Chrnb3	5730417K16Rik|Acrb3	cholinergic receptor, nicotinic, beta polypeptide 3	protein-coding	0.020000	0.442786	-33(CACTTTAAAAAA,-,0.00)
mm_27658.1	chr3	64844623	64844823	-	1	NA	NA	NA	20	NR_003962	319210	Mm.246646	NM_175670	ENSMUSG00000097538	Vmn2r-ps11	4930518C23Rik	vomeronasal 2, receptor, pseudogene 11	pseudo	0.010000	0.457711	
mm_106722.1	chr12	3860916	3861116	+	1	NA	NA	NA	1228	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.010000	0.512438	
mm_151349.1	chr19	55897822	55898022	+	1	NA	NA	NA	2601	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.015000	0.477612	
mm_109628.1	chr12	112767399	112767599	+	1	NA	NA	NA	6844	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.035000	0.587065	
mm_84454.1	chr9	66518549	66518749	-	1	NA	NA	NA	-4056	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.000000	0.368159	
mm_41814.1	chr5	103784154	103784354	+	1	NA	NA	NA	29681	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.020000	0.552239	
mm_38750.1	chr4	145315056	145315256	-	1	NA	NA	NA	-9	NM_009401	21941	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0.055000	0.606965	
mm_119191.1	chr14	32492774	32492974	+	1	NA	NA	NA	-20647	NM_001081221	319955	Mm.318310	NM_177043	ENSMUSG00000054051	Ercc6	4732403I04|C130058G22Rik|CSB	excision repair cross-complementing rodent repair deficiency, complementation group 6	protein-coding	0.040000	0.477612	
mm_151847.1	chr19	5771257	5771457	-	1	NA	NA	NA	44	NM_023912	78891	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0.120000	0.741294	
mm_32020.1	chr4	95053992	95054192	+	1	NA	NA	NA	-1870	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.015000	0.348259	
mm_80458.1	chr9	77983060	77983260	+	1	NA	NA	NA	65795	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.005000	0.343284	
mm_124979.1	chr15	20538290	20538490	+	1	NA	NA	NA	128360	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.015000	0.353234	-41(TTATTTATAGGC,+,0.00)
mm_118922.1	chr14	26969837	26970037	+	1	NA	NA	NA	614	NM_145221	72993	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	0.070000	0.601990	
mm_86958.1	chr10	24999918	25000118	+	1	NA	NA	NA	-72548	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.010000	0.378109	
mm_128615.1	chr15	58823537	58823737	-	1	NA	NA	NA	-210	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.100000	0.731343	
mm_80710.1	chr9	92250135	92250335	+	1	NA	NA	NA	41	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.045000	0.601990	
mm_160472.1	chr8	117256671	117256871	+	1	NA	NA	NA	-248	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.200000	0.820896	
mm_51422.1	chr6	78426097	78426297	+	1	NA	NA	NA	214	NM_009042	19692	Mm.142731	NM_009042	ENSMUSG00000059654	Reg1	-	regenerating islet-derived 1	protein-coding	0.010000	0.417910	31(GCCTTGTAAAGG,-,0.00)
mm_113479.1	chr13	37333605	37333805	+	1	NA	NA	NA	-11640	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.000000	0.422886	
mm_170436.1	chr18	80015893	80016093	+	1	NA	NA	NA	-30902	NM_053117	93737	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0.020000	0.547264	
mm_11539.1	chr2	32634111	32634311	+	1	NA	NA	NA	4711	NM_021515	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.005000	0.378109	
mm_100294.1	chr11	117825851	117826051	+	1	NA	NA	NA	32	NM_027827	71562	Mm.273958	NM_027827	ENSMUSG00000017718	Afmid	9030621K19Rik|Ammd|FKF|KFA|Kf|formylase	arylformamidase	protein-coding	0.065000	0.601990	
mm_171568.1	chr4	147310465	147310665	+	1	NA	NA	NA	134699	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.015000	0.522388	
mm_13330.1	chr2	102785302	102785502	+	1	NA	NA	NA	78964	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.015000	0.477612	-50(CTCTCTTTAAGG,-,0.00),-48(CTCTTTAAGGAC,+,0.00)
mm_130779.1	chr15	101491412	101491612	-	1	NA	NA	NA	0	NM_001201323	100126226	Mm.347934	NM_001201323	ENSMUSG00000067613	Krt83	5430421N21Rik	keratin 83	protein-coding	0.035000	0.507463	-57(CCTTTTATATGC,+,0.00),-33(GCATATAAAAGG,-,0.00)
mm_141741.1	chr17	34122502	34122702	-	1	NA	NA	NA	5	NM_001204973	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.100000	0.721393	
mm_105818.1	chr11	112515540	112515740	-	1	NA	NA	NA	195716	NR_024085	217294	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA	0.005000	0.487562	
mm_158840.1	chrX	169182426	169182626	-	1	NA	NA	NA	4683	NM_001290371	11704	Mm.391342	NM_009666	ENSMUSG00000031354	Amelx	ALGN|AMGL|AMGX|Amel|Amg|LRAP|Rgsc888	amelogenin, X-linked	protein-coding	0.005000	0.358209	
mm_79352.1	chr9	53771581	53771781	+	1	NA	NA	NA	146	NM_028060	72022	Mm.26159	NM_028060	ENSMUSG00000042195	Slc35f2	1500009K05Rik|AU019213	solute carrier family 35, member F2	protein-coding	0.115000	0.666667	
mm_76099.1	chr8	80325215	80325415	-	1	NA	NA	NA	-168730	NM_010369	14934	Mm.13123	NM_010369	ENSMUSG00000051839	Gypa	AI853584|CD235a|GPA	glycophorin A	protein-coding	0.010000	0.502488	
mm_169131.1	chr13	58401986	58402186	-	1	NA	NA	NA	83	NM_001301343	15387	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.150000	0.736318	
mm_23345.1	chr3	54735461	54735661	+	1	NA	NA	NA	22	NM_025442	66248	Mm.144218	NM_025442	ENSMUSG00000036632	Alg5	1500026A19Rik|2600005J22Rik|AV009521|AV170001|AW545564	asparagine-linked glycosylation 5 (dolichyl-phosphate beta-glucosyltransferase)	protein-coding	0.140000	0.786070	
mm_141152.1	chr17	26506409	26506609	-	1	NA	NA	NA	1963	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.030000	0.587065	
mm_5127.1	chr1	9631082	9631282	-	1	NA	NA	NA	-90	NR_015470	72481	Mm.279818	NR_015470	ENSMUSG00000079671	2610203C22Rik	2310007M24Rik	RIKEN cDNA 2610203C22 gene	ncRNA	0.015000	0.517413	
mm_2152.1	chr1	88166654	88166854	+	1	NA	NA	NA	742	NM_201643	394433	Mm.300095	NM_201643	ENSMUSG00000089943	Ugt1a5	-	UDP glucuronosyltransferase 1 family, polypeptide A5	protein-coding	0.015000	0.492537	
mm_158080.1	chrX	101265325	101265525	-	1	NA	NA	NA	-1433	NM_001317221	245536	Mm.212463	NM_001033362	ENSMUSG00000090141	Gm614	-	predicted gene 614	protein-coding	0.005000	0.437811	
mm_66303.1	chr7	38271099	38271299	-	1	NA	NA	NA	149	NM_025390	66161	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0.065000	0.537313	
mm_9818.1	chr1	182282129	182282329	-	1	NA	NA	NA	530	NM_007853	13244	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.070000	0.671642	
mm_132947.1	chr16	49908893	49909093	+	1	NA	NA	NA	53339	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.010000	0.388060	
mm_85872.1	chr9	110916796	110916996	-	1	NA	NA	NA	-35	NM_001195437	235634	Mm.31788	NM_001195437	ENSMUSG00000096393	Gm590	-	predicted gene 590	protein-coding	0.025000	0.517413	
mm_95389.1	chr11	49247387	49247587	+	1	NA	NA	NA	10	NM_001110149	17308	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.000000	0.517413	
mm_64878.1	chr7	14446479	14446679	-	1	NA	NA	NA	8	NM_175250	76971	Mm.290727	NM_175250	ENSMUSG00000030378	Sult2a8	2810007J24Rik	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8	protein-coding	0.010000	0.417910	-37(GAGTTTTAAAGA,-,0.00)
mm_81674.1	chr9	111038633	111038833	+	1	NA	NA	NA	18511	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.010000	0.398010	
mm_51598.1	chr6	84008424	84008624	+	1	NA	NA	NA	-74	NM_001077694	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.060000	0.621891	
mm_136540.1	chr16	97851682	97851882	-	1	NA	NA	NA	-555	NM_144789	114604	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	0.135000	0.756219	
mm_6529.1	chr1	74747259	74747459	-	1	NA	NA	NA	1596	NM_153744	241113	Mm.166501	NM_153744	ENSMUSG00000006542	Prkag3	AMPKg3L|AMPKg3S|Amkg3|Ampkg3	protein kinase, AMP-activated, gamma 3 non-catatlytic subunit	protein-coding	0.020000	0.656716	
mm_62471.1	chr7	101820645	101820845	+	1	NA	NA	NA	2432	NM_008887	11859	Mm.5028	NM_008887	ENSMUSG00000007946	Phox2a	Arix|Phox2|Pmx2|Pmx2a|Px2a	paired-like homeobox 2a	protein-coding	0.065000	0.616915	
mm_9856.1	chr1	184810886	184811086	-	1	NA	NA	NA	314	NM_001290273	66112	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	0.120000	0.711443	
mm_123999.1	chr14	75834757	75834957	-	1	NA	NA	NA	10107	NR_045294	100043189	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.025000	0.537313	
mm_73116.1	chr8	94749912	94750112	+	1	NA	NA	NA	4328	NM_009137	20299	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	0.010000	0.577114	
mm_65387.1	chr7	25091647	25091847	-	1	NA	NA	NA	5428	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.010000	0.587065	
mm_102640.1	chr11	62647942	62648142	-	1	NA	NA	NA	481	NM_198861	192976	Mm.339972	NM_198861	ENSMUSG00000046417	Lrrc75a	Fam211a	leucine rich repeat containing 75A	protein-coding	0.080000	0.711443	
mm_65518.1	chr7	25755988	25756188	-	1	NA	NA	NA	-1368	NM_144922	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.040000	0.547264	
mm_97265.1	chr11	75764875	75765075	+	1	NA	NA	NA	-30834	NR_136933	102641247	Mm.411386	NR_136932		Gm12339	OTTMUSG00000006218	predicted gene 12339	ncRNA	0.010000	0.402985	
mm_59912.1	chr7	30415422	30415622	+	1	NA	NA	NA	1734	NM_011662	22177	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0.000000	0.472637	
mm_146428.1	chr18	84851318	84851518	+	1	NA	NA	NA	4	NM_025797	109672	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.045000	0.626866	
mm_157879.1	chrX	75842855	75843055	-	1	NA	NA	NA	66	NM_001166454	102866	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	0.025000	0.412935	
mm_158916.1	chr1	53187477	53187677	-	1	NA	NA	NA	40	NM_027070	69397	Mm.307084	NM_027070	ENSMUSG00000060715	1700019A02Rik	-	RIKEN cDNA 1700019A02 gene	protein-coding	0.035000	0.587065	
mm_160241.1	chr7	104465090	104465290	-	1	NA	NA	NA	3	NM_009099	20128	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.000000	0.447761	
mm_124130.1	chr14	83497013	83497213	-	1	NA	NA	NA	-946450	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0.005000	0.442786	-35(GCCTATATAAGA,-,0.00)
mm_30338.1	chr3	151732399	151732599	-	1	NA	NA	NA	17460	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.015000	0.477612	
mm_95212.1	chr11	43632740	43632940	+	1	NA	NA	NA	-31278	NM_008375	16204	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0.015000	0.487562	
mm_166114.1	chr4	149702814	149703014	+	1	NA	NA	NA	-1285	NM_001029837	18707	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol 3-kinase catalytic delta polypeptide	protein-coding	0.030000	0.577114	
mm_60279.1	chr7	43953961	43954161	+	1	NA	NA	NA	3395	NM_008457	16624	Mm.435488	NM_008457	ENSMUSG00000063089	Klk1b8	Klk8|Nrpn|TADG14|kallikrein|mGK-8	kallikrein 1-related peptidase b8	protein-coding	0.015000	0.547264	
mm_73650.1	chr8	110940818	110941018	+	1	NA	NA	NA	21053	NM_009179	20444	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	0.025000	0.452736	
mm_40698.1	chr5	65858067	65858267	+	1	NA	NA	NA	-5402	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.030000	0.527363	
mm_67965.1	chr7	100589869	100590069	-	1	NA	NA	NA	-6839	NM_198831	52443	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e	mitochondrial ribosomal protein L48	protein-coding	0.000000	0.457711	
mm_47771.1	chr5	131594780	131594980	-	1	NA	NA	NA	-285389	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.000000	0.452736	
mm_155941.1	chrX	104482716	104482916	+	1	NA	NA	NA	34	NM_001081189	331487	Mm.438275	NM_001081189	ENSMUSG00000073016	Uprt	Gm774	uracil phosphoribosyltransferase	protein-coding	0.045000	0.587065	
mm_126591.1	chr15	82346020	82346220	+	1	NA	NA	NA	74	NM_026914	69029	Mm.260042	NM_026914	ENSMUSG00000022452	Smdt1	1500032L24Rik|Emre	single-pass membrane protein with aspartate rich tail 1	protein-coding	0.095000	0.701493	
mm_54291.1	chr6	29272445	29272645	-	1	NA	NA	NA	57	NM_001190461	69573	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.110000	0.661692	
mm_134511.1	chr16	19067089	19067289	-	1	NA	NA	NA	190439	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.005000	0.477612	-33(GCCTATAAAAGG,-,0.00)
mm_42007.1	chr5	108060641	108060841	+	1	NA	NA	NA	-4933	NM_001253877	17765	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0.045000	0.422886	
mm_172570.1	chr8	111854267	111854467	-	1	NA	NA	NA	-57	NM_011801	23837	Mm.279437	NM_011801	ENSMUSG00000031954	Cfdp1	AA408409|Bcnt|Bucentaur|Cfdp|cp27	craniofacial development protein 1	protein-coding	0.060000	0.611940	
mm_31043.1	chr4	41135504	41135704	+	1	NA	NA	NA	-417	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.160000	0.796020	
mm_85045.1	chr9	89704799	89704999	-	1	NA	NA	NA	144	NM_025360	66111	Mm.27606	NM_025360	ENSMUSG00000032353	Tmed3	1200002G13Rik|AW546672|P24b	transmembrane p24 trafficking protein 3	protein-coding	0.070000	0.671642	
mm_5588.1	chr1	39552308	39552508	-	1	NA	NA	NA	-3568	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.005000	0.422886	
mm_138878.1	chr17	43360229	43360429	+	1	NA	NA	NA	-29137	NM_001081178	224792	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	0.025000	0.577114	
mm_105421.1	chr11	103697590	103697790	-	1	NA	NA	NA	20	NM_019650	56494	Mm.195451	NM_019650	ENSMUSG00000020946	Gosr2	2310032N09Rik|C76855|Gs27|SNARE|membrin	golgi SNAP receptor complex member 2	protein-coding	0.095000	0.686567	
mm_148402.1	chr19	3851758	3851958	+	1	NA	NA	NA	85	NR_073190	12660	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.160000	0.741294	
mm_11381.1	chr2	31245949	31246149	+	1	NA	NA	NA	126	NM_019681	14299	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.165000	0.825871	
mm_163493.1	chr12	109635980	109636180	+	1	NA	NA	NA	68	NR_046302	449562		NR_046302	ENSMUSG00000088294	AF357425	MBII-48	snoRNA AF357425	snoRNA	0.025000	0.452736	
mm_1568.1	chr1	74236515	74236715	+	1	NA	NA	NA	65	NM_029711	76709	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.120000	0.756219	
mm_24791.1	chr3	95545314	95545514	+	1	NA	NA	NA	-14263	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.015000	0.512438	
mm_58146.1	chr6	142278751	142278951	-	1	NA	NA	NA	23	NM_001267707	108096	Mm.206599	NM_130861	ENSMUSG00000063975	Slco1a5	Oatp-3|Oatp3|Slc21a7	solute carrier organic anion transporter family, member 1a5	protein-coding	0.015000	0.442786	
mm_13665.1	chr2	114103230	114103430	+	1	NA	NA	NA	47240	NR_105968	102465982		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	0.025000	0.462687	
mm_161805.1	chr17	56597669	56597869	+	1	NA	NA	NA	12002	NM_153152	224904	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0.000000	0.537313	
mm_69489.1	chr7	134197675	134197875	-	1	NA	NA	NA	27322	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.000000	0.303483	
mm_167266.1	chr8	28585833	28586033	+	1	NA	NA	NA	-501080	NR_033590	666422	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	0.005000	0.507463	
mm_34624.1	chr4	150569130	150569330	+	1	NA	NA	NA	82944	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.080000	0.666667	
mm_26829.1	chr3	10439901	10440101	-	1	NA	NA	NA	129	NM_029068	74718	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0.130000	0.741294	
mm_89758.1	chr10	99913037	99913237	+	1	NA	NA	NA	-102684	NM_001347156	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.030000	0.427861	
mm_128645.1	chr15	59524543	59524743	-	1	NA	NA	NA	-124011	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.015000	0.402985	23(AGCTTTATATGG,-,0.00),25(CTTTATATGGCT,+,0.00)
mm_101146.1	chr11	16591421	16591621	-	1	NA	NA	NA	-83037	NM_001109971	20335	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0.020000	0.512438	
mm_131948.1	chr16	24393440	24393640	+	1	NA	NA	NA	115	NR_037954	68841	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	0.085000	0.696517	
mm_128350.1	chr15	39943535	39943735	-	1	NA	NA	NA	122	NM_172814	239393	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0.075000	0.686567	
mm_802.1	chr1	45348548	45348748	+	1	NA	NA	NA	37110	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.010000	0.393035	
mm_29131.1	chr3	105687472	105687672	-	1	NA	NA	NA	-1	NM_017397	53975	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	0.060000	0.567164	
mm_126602.1	chr15	82452451	82452651	+	1	NA	NA	NA	174	NM_010006	13105	Mm.226708	NM_010006	ENSMUSG00000068086	Cyp2d9	Cyp2d|P450-2D	cytochrome P450, family 2, subfamily d, polypeptide 9	protein-coding	0.015000	0.552239	
mm_92469.1	chr10	78038159	78038359	-	1	NA	NA	NA	-4028	NM_001081695	54427	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.015000	0.557214	
mm_139352.1	chr17	50509436	50509636	+	1	NA	NA	NA	-11	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.140000	0.661692	
mm_128602.1	chr15	58214804	58215004	-	1	NA	NA	NA	-12	NM_026346	67731	Mm.25683	NM_026346	ENSMUSG00000022358	Fbxo32	4833442G10Rik|AI430017|ATROGIN1|Gm20361|MAFbx	F-box protein 32	protein-coding	0.105000	0.686567	
mm_11859.1	chr2	48813928	48814128	+	1	NA	NA	NA	-81	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.200000	0.800995	
mm_33981.1	chr4	137711932	137712132	+	1	NA	NA	NA	4527	NM_001331215	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.010000	0.592040	-68(GCCCCTTAATGG,-,0.00),-66(CCCTTAATGGGT,+,0.00)
mm_136007.1	chr16	75870708	75870908	-	1	NA	NA	NA	38458	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.030000	0.457711	
mm_131851.1	chr16	23061545	23061745	+	1	NA	NA	NA	3345	NM_001102412	16644	Mm.2160	NM_023125	ENSMUSG00000022875	Kng1	Kng	kininogen 1	protein-coding	0.000000	0.477612	
mm_40435.1	chr5	53590328	53590528	+	1	NA	NA	NA	-58	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.095000	0.636816	
mm_64493.1	chr7	143306266	143306466	+	1	NA	NA	NA	-9819	NR_001461	63830	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.000000	0.338308	
mm_110364.1	chr12	40104911	40105111	-	1	NA	NA	NA	29217	NM_009132	20259	Mm.2416	NM_009132	ENSMUSG00000002565	Scin	AW545522|adseverin	scinderin	protein-coding	0.010000	0.452736	
mm_108279.1	chr12	79029072	79029272	+	1	NA	NA	NA	9	NM_181073	211945	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	0.130000	0.776119	
mm_161949.1	chr19	5366063	5366263	-	1	NA	NA	NA	200	NM_001038231	23825	Mm.358649	NM_011793	ENSMUSG00000024844	Banf1	Baf|Bcrp1|L2bp1/Baf	barrier to autointegration factor 1	protein-coding	0.040000	0.572139	
mm_32853.1	chr4	118076905	118077105	+	1	NA	NA	NA	57941	NM_001285520	20441	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.005000	0.512438	
mm_145519.1	chr18	60526114	60526314	+	1	NA	NA	NA	-7	NM_026302	67665	Mm.272801	NM_026302	ENSMUSG00000024603	Dctn4	1110001K06Rik|4930547K17Rik|C130039E17Rik|p62	dynactin 4	protein-coding	0.100000	0.621891	
mm_78456.1	chr9	32372351	32372551	+	1	NA	NA	NA	33	NM_019659	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.015000	0.467662	-100(TCATTTAAGGCC,+,0.00)
mm_13509.1	chr2	109890764	109890964	+	1	NA	NA	NA	-14	NM_011699	22343	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	0.105000	0.671642	
mm_130425.1	chr15	98093437	98093637	-	1	NA	NA	NA	32	NM_144851	223870	Mm.384023	NM_144851	ENSMUSG00000033075	Senp1	2310046A20Rik|D15Ertd528e|E330036L07Rik|suPr-2	SUMO1/sentrin specific peptidase 1	protein-coding	0.090000	0.621891	
mm_101053.1	chr11	8664425	8664625	-	1	NA	NA	NA	10	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.135000	0.761194	
mm_5937.1	chr1	55363645	55363845	-	1	NA	NA	NA	-276	NM_029267	75388	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	bol, boule-like (Drosophila)	protein-coding	0.060000	0.626866	
mm_25792.1	chr3	127512714	127512914	+	1	NA	NA	NA	-13699	NM_001327938	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.005000	0.502488	
mm_48927.1	chr6	4516302	4516502	+	1	NA	NA	NA	10784	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.015000	0.477612	
mm_82722.1	chr9	24774184	24774384	-	1	NA	NA	NA	19	NM_020496	57246	Mm.31452	NM_020496	ENSMUSG00000031965	Tbx20	9430010M06Rik|AL022859|Tbx12	T-box 20	protein-coding	0.080000	0.631841	
mm_84238.1	chr9	62282050	62282250	-	1	NA	NA	NA	29	NM_025721	66712	Mm.263615	NM_025721	ENSMUSG00000046846	Spesp1	4921508E09Rik|AI428149	sperm equatorial segment protein 1	protein-coding	0.090000	0.676617	
mm_132258.1	chr16	32755287	32755487	+	1	NA	NA	NA	19501	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.000000	0.472637	
mm_149083.1	chr19	8915670	8915870	+	1	NA	NA	NA	-4623	NM_024256	72727	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	0.025000	0.457711	
mm_125613.1	chr15	61986949	61987149	+	1	NA	NA	NA	1708	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.140000	0.726368	
mm_112116.1	chr12	112803485	112803685	-	1	NA	NA	NA	-5390	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.015000	0.547264	
mm_44026.1	chr5	147430133	147430333	+	1	NA	NA	NA	-347	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.120000	0.671642	30(GAGTTTAAAAAC,-,0.00)
mm_153302.1	chr19	37989440	37989640	-	1	NA	NA	NA	54037	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.010000	0.402985	
mm_72312.1	chr8	77744438	77744638	+	1	NA	NA	NA	-20086	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	0.005000	0.532338	
mm_35733.1	chr4	45012026	45012226	-	1	NA	NA	NA	286	NM_001163284	230119	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0.115000	0.706468	
mm_171777.1	chr5	109900585	109900785	-	1	NA	NA	NA	-32878	NR_040366	100642166		NR_040366	ENSMUSG00000090015	Gm15446	OTTMUSG00000022004	predicted gene 15446	ncRNA	0.070000	0.547264	-39(CCCTATAAAAAG,-,0.00)
mm_129322.1	chr15	77767480	77767680	-	1	NA	NA	NA	-12351	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.055000	0.601990	
mm_118540.1	chr14	16398627	16398827	+	1	NA	NA	NA	33521	NM_009409	21974	Mm.130362	NM_009409	ENSMUSG00000017485	Top2b	D230016L12Rik|Top-2	topoisomerase (DNA) II beta	protein-coding	0.010000	0.383085	
mm_159137.1	chr2	82053575	82053775	+	1	NA	NA	NA	17	NM_175513	241514	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding	0.155000	0.791045	
mm_36157.1	chr4	59914158	59914358	-	1	NA	NA	NA	798	NM_021053	30936	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0.035000	0.562189	-1(CCTTTTCTACAG,+,0.00)
mm_134434.1	chr16	18073629	18073829	-	1	NA	NA	NA	7326	NM_001289813	13353	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0.005000	0.577114	
mm_125971.1	chr15	76294269	76294469	+	1	NA	NA	NA	-65	NM_001195537	100503915	Mm.393455	NM_001195537	ENSMUSG00000071724	Smpd5	ENSMUSG00000071724|Gm10345|MA-nSMase	sphingomyelin phosphodiesterase 5	protein-coding	0.075000	0.572139	
mm_10534.1	chr2	16410458	16410658	+	1	NA	NA	NA	54254	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.020000	0.412935	
mm_27624.1	chr3	59344296	59344496	-	1	NA	NA	NA	-140	NM_001162884	242050	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.065000	0.656716	
mm_96145.1	chr11	61022465	61022665	+	1	NA	NA	NA	1	NM_001267593	16515	Mm.4970	NM_010603	ENSMUSG00000042529	Kcnj12	IRK-2|IRK2|Kir2.2|MB-IRK2	potassium inwardly-rectifying channel, subfamily J, member 12	protein-coding	0.125000	0.741294	
mm_91486.1	chr10	37135231	37135431	-	1	NA	NA	NA	3595	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.000000	0.313433	
mm_86415.1	chr10	3395698	3395898	+	1	NA	NA	NA	29648	NM_133485	76142	Mm.308126	NM_133485	ENSMUSG00000040653	Ppp1r14c	6330514J04Rik|KEPI	protein phosphatase 1, regulatory (inhibitor) subunit 14c	protein-coding	0.005000	0.527363	
mm_88448.1	chr10	77549542	77549742	+	1	NA	NA	NA	19294	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.005000	0.432836	
mm_172559.1	chr8	106573331	106573531	-	1	NA	NA	NA	-13712	NR_045470	68692	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0.050000	0.497512	
mm_87394.1	chr10	45335634	45335834	+	1	NA	NA	NA	-28	NM_024285	23828	Mm.332793	NM_024285	ENSMUSG00000071317	Bves	Pop1|Popdc1|mBVES	blood vessel epicardial substance	protein-coding	0.180000	0.815920	
mm_136673.1	chr17	6107048	6107248	+	1	NA	NA	NA	318	NM_001103181	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.125000	0.706468	
mm_16238.1	chr2	173156269	173156469	+	1	NA	NA	NA	3296	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.015000	0.492537	
mm_173239.1	chrX	86821932	86822132	+	1	NA	NA	NA	-467038	NR_036689	245502	Mm.490821	NR_036689		Gm41	-	melanoma antigen, family B, 4 pseudogene	pseudo	0.050000	0.616915	
mm_93643.1	chr10	117348144	117348344	-	1	NA	NA	NA	28729	NM_001013391	432508	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.000000	0.313433	
mm_58009.1	chr6	136518400	136518600	-	1	NA	NA	NA	-351	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.010000	0.323383	56(GTGTTTAAAAAG,-,0.00),58(GTTTAAAAAGCG,+,0.00)
mm_27638.1	chr3	62506899	62507099	-	1	NA	NA	NA	-11	NM_028136	72162	Mm.224233	NM_028136	ENSMUSG00000027770	Dhx36	2810407E23Rik|AI452301|AU022184|Ddx36|mKIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	protein-coding	0.100000	0.621891	
mm_125368.1	chr15	39729141	39729341	+	1	NA	NA	NA	-16689	NM_001289506	75766	Mm.159563	NM_029422	ENSMUSG00000022303	Dcstamp	4833414I07Rik|DC-STAMP|FIND|Tm7sf4|mDC-STAMP	dendrocyte expressed seven transmembrane protein	protein-coding	0.005000	0.477612	-35(CACTATAAGAGG,-,0.00)
mm_141029.1	chr17	25248041	25248241	-	1	NA	NA	NA	-2503	NR_105931	102465583		NR_105931	ENSMUSG00000093202	Mir3547	Gm22410|mmu-mir-3547	microRNA 3547	ncRNA	0.025000	0.597015	
mm_68414.1	chr7	109671851	109672051	-	1	NA	NA	NA	-31786	NM_020616	57373	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	0.085000	0.706468	
mm_125935.1	chr15	76247730	76247930	+	1	NA	NA	NA	-361	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.010000	0.482587	
mm_120730.1	chr14	73143036	73143236	+	1	NA	NA	NA	351	NR_033185	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.135000	0.771144	
mm_171587.1	chr4	147642016	147642216	-	1	NA	NA	NA	392	NM_145078	112422	Mm.327194	NM_145078	ENSMUSG00000066000	Zfp979	2610305D13Rik|Ssm1b	zinc finger protein 979	protein-coding	0.005000	0.393035	
mm_31283.1	chr4	45848835	45849035	+	1	NA	NA	NA	-12	NM_028788	74152	Mm.63645	NM_028788	ENSMUSG00000028327	Stra6l	1300002K09Rik|Rbpr2	STRA6-like	protein-coding	0.020000	0.497512	
mm_63691.1	chr7	130577243	130577443	+	1	NA	NA	NA	-141	NM_001004468	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.020000	0.462687	
mm_142873.1	chr17	51822305	51822505	-	1	NA	NA	NA	4183	NM_001163631	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.005000	0.402985	33(TGTTTTTAAAGG,-,0.00),34(GTTTTTAAAGGG,+,0.00),34(GTTTTTAAAGGG,-,0.00)
mm_13456.1	chr2	105668801	105669001	+	1	NA	NA	NA	5	NM_001244201	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.075000	0.562189	
mm_69081.1	chr7	127014459	127014659	-	1	NA	NA	NA	35	NM_080638	78388	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0.025000	0.567164	-76(CCCTTTAAATAC,+,0.00),-76(CCCTTTAAATAC,-,0.00),-74(CTTTAAATACAC,+,0.00)
mm_112352.1	chr12	118301832	118302032	-	1	NA	NA	NA	-492	NM_001166385	20688	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0.090000	0.666667	
mm_172257.1	chr6	71124480	71124680	+	1	NA	NA	NA	19800	NM_001033929	232078	Mm.37547	NM_178413	ENSMUSG00000054474	Thnsl2	BC051244|TSH2	threonine synthase-like 2 (bacterial)	protein-coding	0.030000	0.437811	
mm_155045.1	chrX	42150661	42150861	+	1	NA	NA	NA	60	NM_021465	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.050000	0.597015	
mm_72637.1	chr8	84689213	84689413	+	1	NA	NA	NA	66	NM_198020	212528	Mm.275720	NM_198020	ENSMUSG00000001909	Trmt1	6720406L13Rik|6720477L24|D8Ertd812e	tRNA methyltransferase 1	protein-coding	0.045000	0.587065	
mm_161635.1	chr16	89974570	89974770	-	1	NA	NA	NA	29	NM_001145886	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.025000	0.472637	
mm_96356.1	chr11	67025062	67025262	+	1	NA	NA	NA	8	NM_001291043	338369	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	0.065000	0.706468	
mm_156850.1	chrX	164400838	164401038	+	1	NA	NA	NA	-18849	NM_011081	18700	Mm.3781	NM_011081	ENSMUSG00000031381	Piga	AI194334|Pig-a	phosphatidylinositol glycan anchor biosynthesis, class A	protein-coding	0.010000	0.353234	
mm_116965.1	chr13	56176173	56176373	-	1	NA	NA	NA	2612	NM_145976	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.015000	0.547264	
mm_16331.1	chr2	174328106	174328306	+	1	NA	NA	NA	292	NR_003258	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.005000	0.378109	-2(TCTTTTCTAGAC,+,0.00)
mm_129162.1	chr15	76243076	76243276	-	1	NA	NA	NA	264	NM_001163576	671535	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0.025000	0.577114	
mm_66384.1	chr7	43998825	43999025	-	1	NA	NA	NA	3048	NM_010640	16613	Mm.443378	NM_010640	ENSMUSG00000044485	Klk1b11	Klk11|mGK-11	kallikrein 1-related peptidase b11	protein-coding	0.025000	0.562189	
mm_59856.1	chr7	29982028	29982228	+	1	NA	NA	NA	-1827	NM_001167873	243905	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	0.015000	0.492537	
mm_34607.1	chr4	150248493	150248693	+	1	NA	NA	NA	11269	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.010000	0.587065	
mm_9484.1	chr1	173526136	173526336	-	1	NA	NA	NA	9721	NM_001024721	545384	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	0.000000	0.398010	
mm_45112.1	chr5	45450126	45450326	-	1	NA	NA	NA	3	NM_024236	110391	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	0.090000	0.631841	
mm_148796.1	chr19	6184246	6184446	+	1	NA	NA	NA	-64	NM_001165919	622554	Mm.159757	NM_001165919	ENSMUSG00000024786	Majin	1700123I01Rik	membrane anchored junction protein	protein-coding	0.080000	0.577114	
mm_31586.1	chr4	57820991	57821191	+	1	NA	NA	NA	-24157	NM_009649	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.050000	0.557214	
mm_167997.1	chrX	170017333	170017533	+	1	NA	NA	NA	-38516	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.040000	0.582090	
mm_5548.1	chr1	38627476	38627676	-	1	NA	NA	NA	-332	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.210000	0.865672	
mm_165156.1	chr2	22774213	22774413	-	1	NA	NA	NA	-14	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.065000	0.636816	78(CCGCCTAAAGGG,-,0.00)
mm_21245.1	chr2	156174430	156174630	-	1	NA	NA	NA	5050	NM_001291115	170791	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.015000	0.402985	
mm_68233.1	chr7	104465083	104465283	-	1	NA	NA	NA	10	NM_009099	20128	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.000000	0.447761	
mm_117343.1	chr13	69611172	69611372	-	1	NA	NA	NA	191	NM_175283	78925	Mm.451912	NM_175283	ENSMUSG00000021594	Srd5a1	0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1	steroid 5 alpha-reductase 1	protein-coding	0.045000	0.611940	-33(GCTTATATGTGG,+,0.00)
mm_123425.1	chr14	64434104	64434304	-	1	NA	NA	NA	6822	NM_001253715	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.005000	0.482587	
mm_23767.1	chr3	74984518	74984718	+	1	NA	NA	NA	159154	NM_001310529	213234	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding	0.005000	0.363184	
mm_66956.1	chr7	62420050	62420250	-	1	NA	NA	NA	-11	NM_011746	22652	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	0.045000	0.487562	
mm_29012.1	chr3	101604604	101604804	-	1	NA	NA	NA	3	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.105000	0.691542	
mm_43115.1	chr5	124598675	124598875	+	1	NA	NA	NA	26	NM_026486	67978	Mm.1158	NM_026486		Tctn2	4432405B04Rik|Tect2	tectonic family member 2	protein-coding	0.050000	0.557214	
mm_43934.1	chr5	145104462	145104662	+	1	NA	NA	NA	-9694	NM_023142	11867	Mm.30010	NM_023142	ENSMUSG00000029622	Arpc1b	41kDa|AA408064|AA408534|AA571392|AF007010|AW208418|L72|SOP2Hs|p41-ARC	actin related protein 2/3 complex, subunit 1B	protein-coding	0.030000	0.562189	
mm_103750.1	chr11	80504985	80505185	-	1	NA	NA	NA	4021	NR_126552	77417	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	0.005000	0.537313	
mm_51325.1	chr6	72347612	72347812	+	1	NA	NA	NA	395	NM_026696	68364	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	0.110000	0.746269	
mm_151048.1	chr19	47024882	47025082	+	1	NA	NA	NA	-9793	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.015000	0.532338	
mm_32935.1	chr4	119255379	119255579	+	1	NA	NA	NA	10	NM_001038590	242653	Mm.130701	NM_153105	ENSMUSG00000066058	Cldn19	-	claudin 19	protein-coding	0.015000	0.621891	
mm_70710.1	chr8	15058987	15059187	+	1	NA	NA	NA	1434	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.020000	0.522388	
mm_164139.1	chr15	57347590	57347790	+	1	NA	NA	NA	129935	NM_172378	210463	Mm.26555	NM_172378	ENSMUSG00000022366	Slc22a22	oat-pg	solute carrier family 22 (organic cation transporter), member 22	protein-coding	0.020000	0.393035	
mm_50494.1	chr6	48990109	48990309	+	1	NA	NA	NA	3348	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.025000	0.601990	
mm_164659.1	chr17	37481187	37481387	-	1	NA	NA	NA	2242	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.005000	0.462687	
mm_16322.1	chr2	174304504	174304704	+	1	NA	NA	NA	6745	NM_001310085	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.000000	0.343284	
mm_98626.1	chr11	96007233	96007433	+	1	NA	NA	NA	-1389	NM_009951	140486	Mm.294769	NM_009951	ENSMUSG00000013415	Igf2bp1	AL024068|AW549074|CRD-BP|Crdbp|D030026A21Rik|D11Moh40e|D11Moh45|IMP-1|IMP1|Neilsen|ZBP-1|Zbp1|mir-3063	insulin-like growth factor 2 mRNA binding protein 1	protein-coding	0.130000	0.741294	
mm_43578.1	chr5	137746265	137746465	+	1	NA	NA	NA	396	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.045000	0.597015	
mm_94939.1	chr11	29707646	29707846	+	1	NA	NA	NA	-10817	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.020000	0.467662	
mm_95894.1	chr11	58183825	58184025	+	1	NA	NA	NA	82	NM_001135115	631323	Mm.394103	NM_001135115		Gm12250	Irgb10|OTTMUSG00000005723	predicted gene 12250	protein-coding	0.010000	0.492537	-16(CTCTTTATACAC,+,0.00)
mm_159278.1	chr2	165316900	165317100	-	1	NA	NA	NA	-649	NM_001302754	140579	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.015000	0.562189	
mm_156696.1	chrX	159482185	159482385	+	1	NA	NA	NA	23160	NM_001313753	78283	Mm.160079	NM_001081124	ENSMUSG00000041020	Map7d2	1600028E09Rik|2900002G04Rik|5330432J06Rik|C030036K04Rik|Mtap7d2	MAP7 domain containing 2	protein-coding	0.010000	0.497512	
mm_124909.1	chr15	11000626	11000826	+	1	NA	NA	NA	5	NM_053077	22293	Mm.138278	NM_053077	ENSMUSG00000022243	Slc45a2	Aim-1|Aim1|Dbr|Matp|Oca4|blanc-sale|bls|uw	solute carrier family 45, member 2	protein-coding	0.030000	0.527363	
mm_92146.1	chr10	67068999	67069199	-	1	NA	NA	NA	27889	NM_001204915	28193	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.020000	0.487562	
mm_131638.1	chr16	20498699	20498899	+	1	NA	NA	NA	-18	NM_172265	224045	Mm.233855	NM_172265	ENSMUSG00000003235	Eif2b5	C81315	eukaryotic translation initiation factor 2B, subunit 5 epsilon	protein-coding	0.055000	0.597015	
mm_54375.1	chr6	31196513	31196713	-	1	NA	NA	NA	21861	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.010000	0.388060	
mm_70999.1	chr8	31089484	31089684	+	1	NA	NA	NA	-78	NM_025869	66959	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0.065000	0.626866	
mm_113517.1	chr13	37801436	37801636	+	1	NA	NA	NA	-24502	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.005000	0.427861	
mm_3421.1	chr1	146495529	146495729	+	1	NA	NA	NA	-37	NM_153539	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.010000	0.457711	
mm_136143.1	chr16	87443118	87443318	-	1	NA	NA	NA	-2626	NM_016924	53858	Mm.162406	NM_016924	ENSMUSG00000041079	Rwdd2b	ORF5	RWD domain containing 2B	protein-coding	0.000000	0.412935	-34(TGGTATAAAAGC,-,0.00)
mm_124029.1	chr14	76821647	76821847	-	1	NA	NA	NA	144179	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.015000	0.407960	
mm_146013.1	chr18	69347504	69347704	+	1	NA	NA	NA	1883	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.000000	0.333333	87(CCCTTAAAACTG,+,0.00)
mm_24659.1	chr3	94479039	94479239	+	1	NA	NA	NA	590	NM_172434	78784	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.035000	0.597015	
mm_1884.1	chr1	85669984	85670184	+	1	NA	NA	NA	20096	NM_001313714	20684	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.005000	0.338308	
mm_34527.1	chr4	149261027	149261227	+	1	NA	NA	NA	46571	NM_207682	16561	Mm.402393	NM_008441	ENSMUSG00000063077	Kif1b	A530096N05Rik|AI448212|AI506502|D4Mil1e|KIF1Bp130|KIF1Bp204	kinesin family member 1B	protein-coding	0.015000	0.477612	
mm_16043.1	chr2	167698081	167698281	+	1	NA	NA	NA	7004	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.015000	0.542289	
mm_101826.1	chr11	47105636	47105836	-	1	NA	NA	NA	273566	NM_011891	24052	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.000000	0.363184	
mm_165213.1	chr2	35964830	35965030	+	1	NA	NA	NA	14694	NM_029774	74410	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0.015000	0.547264	
mm_17663.1	chr2	32083528	32083728	-	1	NA	NA	NA	77	NM_175511	241303	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.120000	0.706468	
mm_81499.1	chr9	110034297	110034497	+	1	NA	NA	NA	-17624	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.005000	0.472637	
mm_72559.1	chr8	84073810	84074010	+	1	NA	NA	NA	7074	NM_009055	19724	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	0.025000	0.701493	
mm_24867.1	chr3	95937050	95937250	+	1	NA	NA	NA	7893	NM_023210	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.045000	0.477612	
mm_82097.1	chr9	123056548	123056748	+	1	NA	NA	NA	21907	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.030000	0.502488	
mm_2375.1	chr1	93343545	93343745	+	1	NA	NA	NA	0	NM_023200	66385	Mm.88704	NM_023200	ENSMUSG00000026275	Ppp1r7	2310014J01Rik|SDS22	protein phosphatase 1, regulatory (inhibitor) subunit 7	protein-coding	0.070000	0.611940	
mm_126162.1	chr15	78437029	78437229	+	1	NA	NA	NA	8565	NR_110357	72844	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	0.060000	0.671642	
mm_143961.1	chr17	87025444	87025644	-	1	NA	NA	NA	-17	NM_019936	56724	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	0.085000	0.636816	
mm_166348.1	chr5	119670628	119670828	+	1	NA	NA	NA	-134	NM_198052	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.075000	0.641791	
mm_141299.1	chr17	28080176	28080376	-	1	NA	NA	NA	308	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.080000	0.666667	
mm_119946.1	chr14	54991006	54991206	+	1	NA	NA	NA	3443	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.025000	0.517413	
mm_52500.1	chr6	115212811	115213011	+	1	NA	NA	NA	-26083	NM_001326560	20965	Mm.441431	NM_013681	ENSMUSG00000009394	Syn2	2900074L19Rik|AI836018|AI841723	synapsin II	protein-coding	0.005000	0.442786	
mm_132519.1	chr16	37591983	37592183	+	1	NA	NA	NA	11930	NM_013547	15233	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	0.010000	0.338308	-49(GACTAGAAAAGC,-,0.00),-18(CTACATAAAAGC,-,0.00)
mm_18891.1	chr2	76709809	76710009	-	1	NA	NA	NA	34594	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.552239	
mm_29457.1	chr3	113545472	113545672	-	1	NA	NA	NA	29190	NM_007446	11722	Mm.439727	NM_007446	ENSMUSG00000074264	Amy1	Amy-1|Amy1a|C030014B17Rik	amylase 1, salivary	protein-coding	0.000000	0.492537	
mm_111132.1	chr12	81510971	81511171	-	1	NA	NA	NA	21840	NM_001309847	105940408		NM_001309847	ENSMUSG00000021139	Synj2bp-cox16	ARIP2a	Synj2bp-cox16 readthrough	protein-coding	0.010000	0.402985	
mm_119805.1	chr14	54220476	54220676	+	1	NA	NA	NA	33353	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.487562	
mm_161512.1	chr15	98604571	98604771	-	1	NA	NA	NA	2962	NM_007405	11512	Mm.157091	NM_007405	ENSMUSG00000022994	Adcy6	AC6|mKIAA0422	adenylate cyclase 6	protein-coding	0.050000	0.577114	
mm_7794.1	chr1	131520608	131520808	-	1	NA	NA	NA	6653	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.000000	0.318408	
mm_148338.1	chr18	84468547	84468747	-	1	NA	NA	NA	120857	NM_001033341	240476	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.000000	0.373134	
mm_63981.1	chr7	139983758	139983958	+	1	NA	NA	NA	3016	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.005000	0.557214	
mm_67970.1	chr7	100644825	100645025	-	1	NA	NA	NA	12040	NM_001163187	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.015000	0.542289	
mm_143869.1	chr17	84186781	84186981	-	1	NA	NA	NA	1066	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.100000	0.706468	
mm_91692.1	chr10	43997270	43997470	-	1	NA	NA	NA	7476	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.010000	0.487562	
mm_103898.1	chr11	83575262	83575462	-	1	NA	NA	NA	3274	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.010000	0.402985	
mm_7776.1	chr1	131275191	131275391	-	1	NA	NA	NA	4272	NM_019777	56489	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.035000	0.611940	
mm_172413.1	chr7	19903149	19903349	+	1	NA	NA	NA	-15284	NM_177036	319930	Mm.215839	NM_177036	ENSMUSG00000049848	Ceacam19	C130022P09Rik|CEAL1	carcinoembryonic antigen-related cell adhesion molecule 19	protein-coding	0.020000	0.462687	
mm_156342.1	chrX	139010005	139010205	+	1	NA	NA	NA	75131	NM_177920	331535	Mm.211704	NM_177920	ENSMUSG00000031271	Serpina7	C730040N12Rik|Tbg	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7	protein-coding	0.005000	0.507463	
mm_15901.1	chr2	164960755	164960955	+	1	NA	NA	NA	-7133	NM_020333	57138	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	0.130000	0.756219	
mm_115056.1	chr13	100655198	100655398	+	1	NA	NA	NA	3691	NM_001015889	108143	Mm.301148	NM_027139	ENSMUSG00000052293	Taf9	2310012M09Rik|AA673500|AU045423|TAFII31|TAFII32|Taf2g	TATA-box binding protein associated factor 9	protein-coding	0.025000	0.437811	
mm_34637.1	chr4	150614998	150615198	+	1	NA	NA	NA	37076	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.020000	0.641791	
mm_47335.1	chr5	122501176	122501376	-	1	NA	NA	NA	949	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.050000	0.606965	
mm_156673.1	chrX	159255808	159256008	+	1	NA	NA	NA	126	NM_001346675	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	0.140000	0.761194	
mm_92131.1	chr10	64090204	64090404	-	1	NA	NA	NA	-49	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.035000	0.527363	
mm_113123.1	chr13	24575463	24575663	+	1	NA	NA	NA	-6626	NM_001286100	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.010000	0.452736	
mm_29949.1	chr3	132977109	132977309	-	1	NA	NA	NA	-26918	NM_033525	114249	Mm.279310	NM_033525	ENSMUSG00000040998	Npnt	1110009H02Rik|AA682063|AI314031|Nctn|POEM	nephronectin	protein-coding	0.010000	0.308458	
mm_80013.1	chr9	67854215	67854415	+	1	NA	NA	NA	13919	NM_177184	320528	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.000000	0.303483	
mm_67547.1	chr7	81493768	81493968	-	1	NA	NA	NA	57	NM_021492	11775	Mm.322894	NM_021492	ENSMUSG00000062444	Ap3b2	AI549966|AU042881|Naptb|[b]-NAP|beta-NAP|beta3B	adaptor-related protein complex 3, beta 2 subunit	protein-coding	0.040000	0.611940	
mm_12135.1	chr2	61660901	61661101	+	1	NA	NA	NA	-50693	NM_021526	59029	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0.010000	0.447761	-13(CCCCCTTAAAGC,-,0.00)
mm_20907.1	chr2	150362593	150362793	-	1	NA	NA	NA	72	NM_027017	69277	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	0.050000	0.552239	
mm_46271.1	chr5	99978808	99979008	-	1	NA	NA	NA	30	NM_001077266	11991	Mm.150231	NM_007516	ENSMUSG00000000568	Hnrnpd	Auf1|Hnrpd	heterogeneous nuclear ribonucleoprotein D	protein-coding	0.135000	0.666667	-7(CGCCATTAAAGC,-,0.00)
mm_88611.1	chr10	79824584	79824784	+	1	NA	NA	NA	3663	NM_030218	78906	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.010000	0.537313	
mm_134228.1	chr16	11343328	11343528	-	1	NA	NA	NA	20524	NM_028964	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.005000	0.512438	
mm_769.1	chr1	44119995	44120195	+	1	NA	NA	NA	127	NM_144558	246229	Mm.386883	NM_144558	ENSMUSG00000041684	Bivm	AI854267	basic, immunoglobulin-like variable motif containing	protein-coding	0.035000	0.601990	
mm_67014.1	chr7	65452810	65453010	-	1	NA	NA	NA	-81666	NM_009386	21872	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.005000	0.452736	
mm_170813.1	chr2	176226442	176226642	+	1	NA	NA	NA	-23	NM_001305137	100504263	Mm.379980	NM_001305136	ENSMUSG00000078894	2210418O10Rik	Gm6182	predicted gene 2210418O10Rik	protein-coding	0.005000	0.492537	
mm_43180.1	chr5	127896145	127896345	+	1	NA	NA	NA	263983	NM_177005	319804	Mm.237888	NM_177005	ENSMUSG00000049971	Glt1d1	5730455A04Rik	glycosyltransferase 1 domain containing 1	protein-coding	0.015000	0.502488	
mm_23490.1	chr3	60501889	60502089	+	1	NA	NA	NA	810	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.015000	0.432836	
mm_104936.1	chr11	100096176	100096376	-	1	NA	NA	NA	-52	NM_016880	53617	Mm.37952	NM_016880	ENSMUSG00000048013	Krt35	AI662400|Ha5|Krt1-24|Krtha5	keratin 35	protein-coding	0.020000	0.472637	
mm_12918.1	chr2	84937524	84937724	+	1	NA	NA	NA	978	NM_021398	58207	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	0.010000	0.517413	
mm_34747.1	chr4	152297153	152297353	+	1	NA	NA	NA	39	NM_133788	57295	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|OTTMUSG00000010406|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	0.150000	0.746269	
mm_57903.1	chr6	131388341	131388541	-	1	NA	NA	NA	9	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.170000	0.756219	
mm_98817.1	chr11	97310121	97310321	+	1	NA	NA	NA	-5495	NM_025927	67036	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.030000	0.472637	
mm_23399.1	chr3	57942794	57942994	+	1	NA	NA	NA	-95137	NM_019410	18645	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	0.030000	0.572139	
mm_86081.1	chr9	114781851	114782051	-	1	NA	NA	NA	42	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.095000	0.741294	
mm_43441.1	chr5	136096777	136096977	+	1	NA	NA	NA	-8645	NR_106002	102465626		NR_106002	ENSMUSG00000099003	Mir7035	Gm27661|mmu-mir-7035	microRNA 7035	ncRNA	0.005000	0.512438	
mm_12761.1	chr2	79255653	79255853	+	1	NA	NA	NA	327	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.085000	0.651741	
mm_26055.1	chr3	135825556	135825756	+	1	NA	NA	NA	-1	NM_001135149	67547	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.010000	0.522388	-27(ATCTCTAAAGGG,-,0.00)
mm_32644.1	chr4	115057324	115057524	+	1	NA	NA	NA	-387	NM_001287388	21349	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.030000	0.562189	
mm_150308.1	chr19	34570890	34571090	+	1	NA	NA	NA	-12539	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.000000	0.467662	
mm_121881.1	chr14	21500191	21500391	-	1	NA	NA	NA	506	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.140000	0.711443	
mm_63473.1	chr7	127652028	127652228	+	1	NA	NA	NA	-37695	NM_177226	320683	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0.025000	0.502488	
mm_120611.1	chr14	70205131	70205331	+	1	NA	NA	NA	-608	NM_001271408	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.010000	0.542289	
mm_153848.1	chr19	46338510	46338710	-	1	NA	NA	NA	50	NM_001164294	67116	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	0.060000	0.621891	
mm_98624.1	chr11	95918796	95918996	+	1	NA	NA	NA	-4025	NM_008081	14422	Mm.340702	NM_008081	ENSMUSG00000013418	B4galnt2	AI593864|Dlb-1|Dlb1|Galg2|Galgt2|Ggm3|Igf2bp1	beta-1,4-N-acetyl-galactosaminyl transferase 2	protein-coding	0.025000	0.487562	-34(TCCTATAAAGTC,+,0.00)
mm_126384.1	chr15	80173466	80173666	+	1	NA	NA	NA	-155	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.170000	0.865672	
mm_163169.1	chr11	86807560	86807760	-	1	NA	NA	NA	0	NM_026191	67487	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.115000	0.696517	
mm_103046.1	chr11	69799852	69800052	-	1	NA	NA	NA	1764	NM_001291104	14166	Mm.269011	NM_010198	ENSMUSG00000042826	Fgf11	Fgf-11|Fhf-3|Fhf3	fibroblast growth factor 11	protein-coding	0.015000	0.462687	
mm_88706.1	chr10	80150365	80150565	+	1	NA	NA	NA	783	NM_001305799	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.110000	0.786070	
mm_46509.1	chr5	105136235	105136435	-	1	NA	NA	NA	3217	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.328358	
mm_128072.1	chr15	27661451	27661651	-	1	NA	NA	NA	19991	NM_001242424	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.010000	0.358209	
mm_143190.1	chr17	59013204	59013404	-	1	NA	NA	NA	18	NM_026497	67993	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.050000	0.537313	
mm_39976.1	chr5	32353429	32353629	+	1	NA	NA	NA	-51	NM_172147	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0.005000	0.462687	
mm_49644.1	chr6	30805517	30805717	+	1	NA	NA	NA	64318	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.015000	0.557214	
mm_133575.1	chr16	91406349	91406549	+	1	NA	NA	NA	214	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.080000	0.736318	
mm_102811.1	chr11	68947457	68947657	-	1	NA	NA	NA	9301	NM_177566	442801	Mm.376147	NM_177566	ENSMUSG00000052921	Arhgef15	D130071N09|D530030K12Rik|E5	Rho guanine nucleotide exchange factor (GEF) 15	protein-coding	0.025000	0.552239	
mm_53674.1	chr6	141866262	141866462	+	1	NA	NA	NA	-10191	NM_030687	28250	Mm.255586	NM_030687	ENSMUSG00000030237	Slco1a4	AI785519|Oatp1a4|Oatp2|Slc21a5	solute carrier organic anion transporter family, member 1a4	protein-coding	0.020000	0.427861	
mm_117128.1	chr13	60934706	60934906	-	1	NA	NA	NA	1760	NM_001145799	13024	Mm.482089	NM_007796	ENSMUSG00000044258	Ctla2a	Ctla-2a	cytotoxic T lymphocyte-associated protein 2 alpha	protein-coding	0.005000	0.427861	
mm_164948.1	chr19	4262417	4262617	+	1	NA	NA	NA	1361	NR_105951	102465595		NR_105951	ENSMUSG00000099290	Mir6985	Gm27719|mmu-mir-6985	microRNA 6985	ncRNA	0.025000	0.597015	
mm_101722.1	chr11	42182342	42182542	-	1	NA	NA	NA	488	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding	0.025000	0.442786	
mm_76017.1	chr8	73353414	73353614	-	1	NA	NA	NA	26	NM_001317391	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.100000	0.721393	
mm_162483.1	chr1	135105136	135105336	-	1	NA	NA	NA	40	NM_001033409	329252	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0.155000	0.776119	
mm_153195.1	chr19	34524506	34524706	-	1	NA	NA	NA	2868	NM_001111100	16889	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.025000	0.402985	
mm_70359.1	chr8	8334973	8335173	+	1	NA	NA	NA	325700	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.020000	0.512438	
mm_33170.1	chr4	126025426	126025626	+	1	NA	NA	NA	867	NM_001252651	12986	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.005000	0.442786	
mm_122878.1	chr14	54926468	54926668	-	1	NA	NA	NA	220	NM_010112	13644	Mm.236438	NM_010112	ENSMUSG00000022203	Efs	-	embryonal Fyn-associated substrate	protein-coding	0.065000	0.676617	
mm_27139.1	chr3	32616368	32616568	-	1	NA	NA	NA	67	NM_013531	14696	Mm.139192	NM_013531	ENSMUSG00000027669	Gnb4	6720453A21Rik|G(beta)4	guanine nucleotide binding protein (G protein), beta 4	protein-coding	0.140000	0.771144	
mm_37102.1	chr4	116627802	116628002	-	1	NA	NA	NA	49	NM_016777	50927	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.050000	0.522388	
mm_81935.1	chr9	120180170	120180370	+	1	NA	NA	NA	30528	NM_001039364	17433	Mm.486167	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.015000	0.353234	
mm_73230.1	chr8	104111295	104111495	+	1	NA	NA	NA	-5522	NR_131138	546096	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	-	predicted gene, 29682	ncRNA	0.010000	0.522388	
mm_72289.1	chr8	75213172	75213372	+	1	NA	NA	NA	-672	NM_029182	75141	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.095000	0.711443	
mm_11503.1	chr2	32535952	32536152	+	1	NA	NA	NA	693	NM_153560	98952	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.010000	0.432836	
mm_6574.1	chr1	75210670	75210870	-	1	NA	NA	NA	8	NM_029010	74577	Mm.458319	NM_029010	ENSMUSG00000026200	Glb1l	4833408P15Rik	galactosidase, beta 1-like	protein-coding	0.065000	0.611940	
mm_5212.1	chr1	13626108	13626308	-	1	NA	NA	NA	34301	NM_145381	212442	Mm.89572	NM_145381	ENSMUSG00000025937	Lactb2	Cgi-83|E430032H21Rik	lactamase, beta 2	protein-coding	0.015000	0.457711	
mm_107668.1	chr12	53248310	53248510	+	1	NA	NA	NA	-267	NM_013780	27386	Mm.247044	NM_013780	ENSMUSG00000021010	Npas3	4930423H22Rik|bHLHe12	neuronal PAS domain protein 3	protein-coding	0.095000	0.696517	
mm_85860.1	chr9	110747029	110747229	-	1	NA	NA	NA	16	NM_011199	19228	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.010000	0.522388	-7(TCTTTTCAAGCC,+,0.00)
mm_68928.1	chr7	126475001	126475201	-	1	NA	NA	NA	29	NM_001289538	20399	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	0.145000	0.716418	
mm_144275.1	chr18	11657396	11657596	+	1	NA	NA	NA	147	NM_001081223	225182	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8	protein-coding	0.100000	0.701493	
mm_38186.1	chr4	135325222	135325422	-	1	NA	NA	NA	27892	NM_016799	51796	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.025000	0.422886	
mm_29898.1	chr3	131364637	131364837	-	1	NA	NA	NA	-19814	NM_028943	74442	Mm.273360	NM_028943	ENSMUSG00000050931	Sgms2	4933405A16Rik|5133401H06Rik|AI854299	sphingomyelin synthase 2	protein-coding	0.015000	0.507463	
mm_158979.1	chr1	125435594	125435794	-	1	NA	NA	NA	33	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.125000	0.736318	
mm_124575.1	chr14	124557449	124557649	-	1	NA	NA	NA	119578	NM_207667	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.015000	0.328358	20(CTTTTTATATTC,+,0.00)
mm_69287.1	chr7	128205888	128206088	-	1	NA	NA	NA	378	NM_009943	12862	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	0.050000	0.592040	
mm_81.1	chr1	6749138	6749338	+	1	NA	NA	NA	19187	NR_045188	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.288557	
mm_136618.1	chr17	5492834	5493034	+	1	NA	NA	NA	334	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.075000	0.641791	
mm_99827.1	chr11	108920726	108920926	+	1	NA	NA	NA	477	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.100000	0.671642	
mm_136691.1	chr17	6895858	6896058	+	1	NA	NA	NA	-621	NR_030465	751529		NR_030465	ENSMUSG00000076218	Mir692-1	Mirn692-1|mir-692-1	microRNA 692-1	ncRNA	0.005000	0.467662	-50(TGACATAAAAGC,-,0.00)
mm_67680.1	chr7	89338519	89338719	-	1	NA	NA	NA	168	NM_028343	72759	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.110000	0.696517	
mm_127762.1	chr15	103537977	103538177	+	1	NA	NA	NA	-85	NM_021391	58200	Mm.143788	NM_021391	ENSMUSG00000022490	Ppp1r1a	0610038N18Rik|I-1	protein phosphatase 1, regulatory (inhibitor) subunit 1A	protein-coding	0.100000	0.711443	
mm_92524.1	chr10	78712877	78713077	-	1	NA	NA	NA	5316	NM_009809	12365	Mm.20940	NM_009809	ENSMUSG00000005355	Casp14	MICE|mini-ICE	caspase 14	protein-coding	0.015000	0.378109	
mm_122609.1	chr14	51057501	51057701	-	1	NA	NA	NA	-359	NM_001011875	497106	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	0.015000	0.522388	
mm_62448.1	chr7	101384780	101384980	+	1	NA	NA	NA	-646	NM_027180	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.020000	0.621891	
mm_121866.1	chr14	20734208	20734408	-	1	NA	NA	NA	254	NM_010811	17423	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0.155000	0.796020	
mm_101798.1	chr11	46237115	46237315	-	1	NA	NA	NA	1658	NM_177075	320116	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	0.010000	0.442786	
mm_71884.1	chr8	69816715	69816915	+	1	NA	NA	NA	-5750	NM_020028	53978	Mm.23253	NM_020028	ENSMUSG00000031861	Lpar2	Edg4|IPA2|LPA2	lysophosphatidic acid receptor 2	protein-coding	0.030000	0.582090	
mm_94582.1	chr11	11690359	11690559	+	1	NA	NA	NA	282	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.020000	0.562189	
mm_139497.1	chr17	56241669	56241869	+	1	NA	NA	NA	-1219	NR_029827	723883		NR_029827	ENSMUSG00000065491	Mir7b	Mirn7b|mir-7b|mmu-mir-7b	microRNA 7b	ncRNA	0.050000	0.572139	
mm_46973.1	chr5	115194120	115194320	-	1	NA	NA	NA	161	NM_001310712	29867	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	0.130000	0.791045	-8(CCGCATTTAAGC,-,0.00),-6(GCATTTAAGCGG,+,0.00)
mm_140198.1	chr17	83705802	83706002	+	1	NA	NA	NA	-261	NM_001171054	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.040000	0.611940	
mm_70142.1	chr7	143458404	143458604	-	1	NA	NA	NA	2546	NM_009876	12577	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.005000	0.398010	
mm_32011.1	chr4	94739373	94739573	+	1	NA	NA	NA	184	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	0.030000	0.492537	-79(CCTTTAAGATAC,+,0.00)
mm_130584.1	chr15	99590777	99590977	-	1	NA	NA	NA	-151	NM_009701	11830	Mm.45580	NM_009701	ENSMUSG00000044217	Aqp5	-	aquaporin 5	protein-coding	0.145000	0.756219	
mm_1258.1	chr1	63114649	63114849	+	1	NA	NA	NA	9	NR_045914	100380944	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602|OTTMUSG00000002611	INO80 complex subunit D, opposite strand	ncRNA	0.035000	0.567164	
mm_12190.1	chr2	65553753	65553953	+	1	NA	NA	NA	13639	NM_018732	20269	Mm.330256	NM_018732	ENSMUSG00000057182	Scn3a	Gm1000|Nav1.3	sodium channel, voltage-gated, type III, alpha	protein-coding	0.025000	0.487562	
mm_108560.1	chr12	84641302	84641502	+	1	NA	NA	NA	383	NM_001168589	432677	Mm.311913	NM_001033776	ENSMUSG00000071235	Vrtn	7420416P09Rik	vertebrae development associated	protein-coding	0.015000	0.616915	
mm_89383.1	chr10	89465305	89465505	+	1	NA	NA	NA	-21438	NM_001033331	237436	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0.000000	0.422886	-32(AGGTATAAAAAG,-,0.00)
mm_119572.1	chr14	50357810	50358010	+	1	NA	NA	NA	-4	NM_205819	239081	Mm.291512	NM_205819	ENSMUSG00000051969	Tlr11	Gm287	toll-like receptor 11	protein-coding	0.005000	0.452736	
mm_46769.1	chr5	112273677	112273877	-	1	NA	NA	NA	-2914	NM_001326590	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.000000	0.378109	
mm_158219.1	chrX	105929258	105929458	-	1	NA	NA	NA	14	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.050000	0.562189	
mm_157054.1	chrX	8090337	8090537	-	1	NA	NA	NA	54	NM_009515	22376	Mm.4735	NM_009515	ENSMUSG00000031165	Was	U42471|Wasp	Wiskott-Aldrich syndrome	protein-coding	0.015000	0.567164	
mm_60952.1	chr7	47050569	47050769	+	1	NA	NA	NA	29	NM_026436	67893	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.090000	0.661692	
mm_89897.1	chr10	110933785	110933985	+	1	NA	NA	NA	13709	NM_007792	13008	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	0.010000	0.303483	
mm_15887.1	chr2	164841448	164841648	+	1	NA	NA	NA	7775	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.015000	0.512438	
mm_29760.1	chr3	127162275	127162475	-	1	NA	NA	NA	1070	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.075000	0.611940	
mm_127826.1	chr15	6435117	6435317	-	1	NA	NA	NA	-10116	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.020000	0.532338	
mm_75234.1	chr8	39629304	39629504	-	1	NA	NA	NA	13274	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.005000	0.363184	
mm_61639.1	chr7	80294446	80294646	+	1	NA	NA	NA	95	NM_001285998	233406	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	0.085000	0.621891	
mm_44815.1	chr5	33629513	33629713	-	1	NA	NA	NA	22	NM_178390	74504	Mm.294695	NM_178390	ENSMUSG00000037339	Fam53a	2410018C17Rik|5430419M09Rik|Dntnp	family with sequence similarity 53, member A	protein-coding	0.155000	0.756219	
mm_150180.1	chr19	32619954	32620154	+	1	NA	NA	NA	49	NM_011864	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.005000	0.452736	
mm_16490.1	chr2	180984952	180985152	+	1	NA	NA	NA	-1483	NM_028518	73368	Mm.345095	NM_028518	ENSMUSG00000016356	Col20a1	1700051I12Rik	collagen, type XX, alpha 1	protein-coding	0.005000	0.527363	65(TCATTTATGGCC,+,0.00)
mm_118512.1	chr14	14346339	14346539	+	1	NA	NA	NA	-56	NM_008369	16188	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0.105000	0.731343	
mm_87770.1	chr10	60294430	60294630	+	1	NA	NA	NA	10069	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.010000	0.527363	
mm_31152.1	chr4	43406453	43406653	+	1	NA	NA	NA	51	NM_199057	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.045000	0.597015	
mm_52811.1	chr6	121343235	121343435	+	1	NA	NA	NA	259	NM_001347433	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.015000	0.577114	
mm_46028.1	chr5	91402814	91403014	-	1	NA	NA	NA	80	NM_007568	12223	Mm.2024	NM_007568	ENSMUSG00000082361	Btc	Bcn	betacellulin, epidermal growth factor family member	protein-coding	0.030000	0.616915	
mm_151888.1	chr19	5798609	5798809	-	1	NA	NA	NA	-2728	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.005000	0.422886	31(GCCTCTTAAAAA,-,0.00)
mm_86628.1	chr10	13967731	13967931	+	1	NA	NA	NA	1452	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.040000	0.512438	
mm_26993.1	chr3	25790303	25790503	-	1	NA	NA	NA	362904	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.010000	0.457711	-74(GTGTTTAAAAAA,-,0.00)
mm_9822.1	chr1	182468517	182468717	-	1	NA	NA	NA	48866	NM_009794	12334	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.000000	0.412935	
mm_119595.1	chr14	50956052	50956252	+	1	NA	NA	NA	11	NM_001123371	667034	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	0.030000	0.562189	
mm_27482.1	chr3	53692812	53693012	-	1	NA	NA	NA	-35557	NM_172862	242022	Mm.38378	NM_172862	ENSMUSG00000037016	Frem2	6030440P17Rik|8430406N05Rik|Gm409|b2b1562Clo|my|ne|nv1	Fras1 related extracellular matrix protein 2	protein-coding	0.020000	0.422886	
mm_25573.1	chr3	116844445	116844645	+	1	NA	NA	NA	-15022	NM_001113478	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.030000	0.477612	
mm_12857.1	chr2	83724372	83724572	+	1	NA	NA	NA	75	NM_008402	16410	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.115000	0.746269	
mm_70786.1	chr8	22506328	22506528	+	1	NA	NA	NA	-29549	NM_001146117	102032	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	0.040000	0.512438	-48(TCCCATTAAAGA,-,0.00)
mm_101858.1	chr11	48871108	48871308	-	1	NA	NA	NA	138	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding	0.040000	0.487562	
mm_25233.1	chr3	103863975	103864175	+	1	NA	NA	NA	3798	NM_008979	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.015000	0.422886	
mm_33165.1	chr4	126023360	126023560	+	1	NA	NA	NA	-1199	NR_045561	12986	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.015000	0.537313	
mm_93677.1	chr10	117746241	117746441	-	1	NA	NA	NA	17	NM_029875	215436	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0.175000	0.800995	
mm_14262.1	chr2	128364328	128364528	+	1	NA	NA	NA	64923	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.035000	0.557214	
mm_133756.1	chr16	94448014	94448214	+	1	NA	NA	NA	-77099	NM_001159617	56176	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0.020000	0.527363	
mm_153141.1	chr19	34246617	34246817	-	1	NA	NA	NA	8656	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.015000	0.512438	
mm_66909.1	chr7	60002976	60003176	-	1	NA	NA	NA	2080	NM_013670	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding	0.005000	0.487562	
mm_29279.1	chr3	107664285	107664485	-	1	NA	NA	NA	32163	NM_145542	229709	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	0.005000	0.343284	
mm_47446.1	chr5	123482484	123482684	-	1	NA	NA	NA	-483	NM_029594	76399	Mm.75049	NM_029594	ENSMUSG00000029437	Il31	1700013B14Rik	interleukin 31	protein-coding	0.015000	0.542289	
mm_76947.1	chr8	105979329	105979529	-	1	NA	NA	NA	-10	NM_027960	71854	Mm.173395	NM_027960	ENSMUSG00000031898	Dpep3	1700018F16Rik|AI507039|MBD-3|MLZ-136	dipeptidase 3	protein-coding	0.065000	0.636816	
mm_74637.1	chr8	13253977	13254177	-	1	NA	NA	NA	85	NM_172750	234072	Mm.132785	NM_172750	ENSMUSG00000031448	Adprhl1	Arh2|D330008N11Rik	ADP-ribosylhydrolase like 1	protein-coding	0.020000	0.562189	
mm_35424.1	chr4	35211189	35211389	-	1	NA	NA	NA	14591	NM_001081343	73205	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585	RIKEN cDNA 3110043O21 gene	protein-coding	0.015000	0.407960	
mm_60012.1	chr7	30737800	30738000	+	1	NA	NA	NA	1507	NM_008085	14447	Mm.436562	NM_008085	ENSMUSG00000061099	Gapdhs	Gapd-s|Gapds	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein-coding	0.025000	0.646766	
mm_106928.1	chr12	8433049	8433249	+	1	NA	NA	NA	66836	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.005000	0.457711	-34(CCCCTTTAAAAG,-,0.00),-33(CCCTTTAAAAGG,+,0.00),-33(CCCTTTAAAAGG,-,0.00),-32(CCTTTAAAAGGA,+,0.00),-31(CTTTAAAAGGAC,+,0.00)
mm_169903.1	chr16	52084071	52084271	+	1	NA	NA	NA	52622	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.000000	0.557214	
mm_138429.1	chr17	35076967	35077167	+	1	NA	NA	NA	125	NM_027366	70274	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	0.020000	0.592040	
mm_132159.1	chr16	32179744	32179944	+	1	NA	NA	NA	44	NM_001033539	328660	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.010000	0.393035	
mm_120432.1	chr14	65805821	65806021	+	1	NA	NA	NA	10	NM_023209	52033	Mm.24337	NM_023209	ENSMUSG00000022033	Pbk	2810434B10Rik|AW538537|D14Ertd732e|TOPK	PDZ binding kinase	protein-coding	0.090000	0.592040	
mm_41520.1	chr5	92397954	92398154	+	1	NA	NA	NA	9920	NM_001310665	109979	Mm.263514	NM_181728	ENSMUSG00000034842	Art3	4930569O04Rik|ARTC3	ADP-ribosyltransferase 3	protein-coding	0.030000	0.482587	-52(CCATTTATGGAG,+,0.00)
mm_142839.1	chr17	51794148	51794348	-	1	NA	NA	NA	17806	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.040000	0.547264	
mm_92446.1	chr10	77690710	77690910	-	1	NA	NA	NA	-53	NM_001205032	100502831	Mm.486158	NM_001205032	ENSMUSG00000095970	Gm19402	-	predicted gene, 19402	protein-coding	0.010000	0.512438	-34(GAGTATAAAAGC,-,0.00)
mm_122270.1	chr14	34362209	34362409	-	1	NA	NA	NA	-6916	NM_183278	69134	Mm.27156	NM_183278	ENSMUSG00000043681	Fam25c	2200001I15Rik|Fam25	family with sequence similarity 25, member C	protein-coding	0.020000	0.447761	
mm_134057.1	chr16	6745389	6745589	-	1	NA	NA	NA	-324346	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.000000	0.432836	
mm_4172.1	chr1	171121575	171121775	+	1	NA	NA	NA	14	NM_001081275	75472	Mm.32760	NM_029301	ENSMUSG00000026649	Cfap126	1700009P17Rik|AV282292|Flattop|Fltp	cilia and flagella associated protein 126	protein-coding	0.010000	0.467662	-47(CCTCTTATGCCC,+,0.00)
mm_8436.1	chr1	152625116	152625316	-	1	NA	NA	NA	1	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.120000	0.696517	
mm_241.1	chr1	19208980	19209180	+	1	NA	NA	NA	166	NM_001286340	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.020000	0.457711	
mm_15614.1	chr2	160880546	160880746	+	1	NA	NA	NA	-24	NM_022883	64899	Mm.292111	NM_022883	ENSMUSG00000027412	Lpin3	9130206L11Rik|AA438110|AV236139|mKIAA4023	lipin 3	protein-coding	0.030000	0.502488	
mm_160648.1	chr9	110388412	110388612	-	1	NA	NA	NA	19698	NM_001081043	104831	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.020000	0.616915	
mm_10650.1	chr2	20667989	20668189	+	1	NA	NA	NA	148576	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.010000	0.522388	
mm_115376.1	chr13	113087830	113088030	+	1	NA	NA	NA	13051	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.015000	0.417910	
mm_81826.1	chr9	118050129	118050329	+	1	NA	NA	NA	9707	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.000000	0.427861	
mm_5275.1	chr1	18265036	18265236	-	1	NA	NA	NA	2	NM_183124	77673	Mm.99530	NM_183124	ENSMUSG00000067773	Defb41	9230102D03Rik|BD-17|Bd-41|Defb16|Defb17|Gm15386|OTTMUSG00000020946|OTTMUSG00000020948	defensin beta 41	protein-coding	0.000000	0.363184	-36(TGCTTTAAATAG,-,0.00),-34(CTTTAAATAGAA,+,0.00)
mm_115058.1	chr13	100676020	100676220	+	1	NA	NA	NA	6639	NM_001168386	76041	Mm.23977	NM_183115	ENSMUSG00000048924	Ccdc125	5830436D01Rik|AL023012	coiled-coil domain containing 125	protein-coding	0.025000	0.537313	
mm_127937.1	chr15	10558571	10558771	-	1	NA	NA	NA	-3	NM_029430	75777	Mm.48812	NM_029430	ENSMUSG00000022249	Ttc23l	4930401A09Rik	tetratricopeptide repeat domain 23-like	protein-coding	0.035000	0.606965	
mm_71087.1	chr8	34807232	34807432	+	1	NA	NA	NA	-278	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.070000	0.636816	
mm_85007.1	chr9	87209818	87210018	-	1	NA	NA	NA	45614	NM_199316	382090	Mm.335338	NM_199316	ENSMUSG00000056919	Cep162	4922501C03Rik|mKIAA1009	centrosomal protein 162	protein-coding	0.000000	0.383085	-32(GGTCTTATAAGG,-,0.00),-30(TCTTATAAGGAG,+,0.00)
mm_81558.1	chr9	110344157	110344357	+	1	NA	NA	NA	10901	NM_001001144	235623	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0.005000	0.502488	
mm_69635.1	chr7	137564602	137564802	-	1	NA	NA	NA	127028	NR_033611	620016	Mm.388932	NR_033611	ENSMUSG00000100863	Gm12669	OTTMUSG00000007920	glutaredoxin 3 pseudogene	pseudo	0.025000	0.517413	
mm_24736.1	chr3	95283116	95283316	+	1	NA	NA	NA	281	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.040000	0.562189	
mm_26594.1	chr3	151438064	151438264	+	1	NA	NA	NA	282	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.025000	0.487562	
mm_151497.1	chr19	58727911	58728111	+	1	NA	NA	NA	-876	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.010000	0.522388	
mm_164476.1	chr16	71868852	71869052	+	1	NA	NA	NA	365375	NR_131116	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0.015000	0.383085	
mm_167442.1	chr8	121571267	121571467	-	1	NA	NA	NA	7439	NM_133765	76454	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0.020000	0.527363	
mm_112745.1	chr13	19341595	19341795	+	1	NA	NA	NA	54118	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.407960	
mm_19502.1	chr2	93462376	93462576	-	1	NA	NA	NA	26	NM_001271430	12521	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.065000	0.676617	
mm_38032.1	chr4	133874602	133874802	-	1	NA	NA	NA	29	NM_001285506	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.020000	0.567164	
mm_82890.1	chr9	32541371	32541571	-	1	NA	NA	NA	-19	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.030000	0.472637	
mm_113953.1	chr13	51100690	51100890	+	1	NA	NA	NA	-63	NR_029463	77428	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0.195000	0.860697	
mm_16144.1	chr2	171640753	171640953	+	1	NA	NA	NA	321946	NR_040509	75655	Mm.396203	NR_040509	ENSMUSG00000086823	1700028P15Rik	-	RIKEN cDNA 1700028P15 gene	ncRNA	0.045000	0.472637	
mm_3394.1	chr1	143640628	143640828	+	1	NA	NA	NA	31	NM_020025	26878	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.030000	0.462687	
mm_160788.1	chr10	128989574	128989774	+	1	NA	NA	NA	-240	NM_146861	18373	Mm.377111	NM_146861	ENSMUSG00000069430	Olfr9	MOR269-3	olfactory receptor 9	protein-coding	0.005000	0.462687	
mm_56463.1	chr6	98928824	98929024	-	1	NA	NA	NA	99374	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.020000	0.442786	
mm_96038.1	chr11	59556327	59556527	+	1	NA	NA	NA	13741	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.015000	0.437811	
mm_166320.1	chr5	110867834	110868034	+	1	NA	NA	NA	-11869	NM_001267622	209683	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	0.005000	0.462687	
mm_144159.1	chr18	5603669	5603869	+	1	NA	NA	NA	-11332	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	0.010000	0.412935	
mm_171107.1	chr3	134545669	134545869	+	1	NA	NA	NA	-122134	NR_040600	75208	Mm.84580	NR_040600	ENSMUSG00000105765	4930539C22Rik	-	RIKEN cDNA 4930539C22 gene	ncRNA	0.030000	0.432836	
mm_161138.1	chr13	14169932	14170132	+	1	NA	NA	NA	106248	NM_198122	94246	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.025000	0.398010	76(TAGTATAAAAGA,-,0.00)
mm_13392.1	chr2	103969575	103969775	+	1	NA	NA	NA	118	NM_001142336	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.075000	0.572139	
mm_138188.1	chr17	34268991	34269191	+	1	NA	NA	NA	5864	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.005000	0.507463	
mm_18162.1	chr2	45099308	45099508	-	1	NA	NA	NA	10869	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.010000	0.353234	
mm_36473.1	chr4	82800169	82800369	-	1	NA	NA	NA	59392	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0.000000	0.318408	
mm_70740.1	chr8	19141358	19141558	+	1	NA	NA	NA	699	NM_001286493	546038	Mm.99206	NM_001034905	ENSMUSG00000059463	Spag11b	EG546038|Ep2c/h|Spag11c/h	sperm associated antigen 11B	protein-coding	0.030000	0.492537	
mm_123742.1	chr14	70191368	70191568	-	1	NA	NA	NA	778	NM_001271409	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.025000	0.547264	
mm_2940.1	chr1	132315990	132316190	+	1	NA	NA	NA	-35	NM_028778	74137	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.105000	0.636816	
mm_157467.1	chrX	47892310	47892510	-	1	NA	NA	NA	142	NM_053123	93761	Mm.229151	NM_053123	ENSMUSG00000031099	Smarca1	5730494M04Rik|Snf2l	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding	0.060000	0.621891	
mm_94439.1	chr11	6292762	6292962	+	1	NA	NA	NA	304	NM_001252288	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.010000	0.452736	
mm_24899.1	chr3	96173889	96174089	+	1	NA	NA	NA	1483	NM_153053	107701	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	0.030000	0.601990	
mm_50515.1	chr6	49039793	49039993	+	1	NA	NA	NA	3375	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.055000	0.547264	
mm_95990.1	chr11	59002878	59003078	+	1	NA	NA	NA	24885	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.010000	0.567164	
mm_93669.1	chr10	117709994	117710194	-	1	NA	NA	NA	664	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.090000	0.656716	
mm_159894.1	chr6	29560009	29560209	-	1	NA	NA	NA	30827	NM_001252382	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.035000	0.472637	
mm_131143.1	chr16	6349067	6349267	+	1	NA	NA	NA	373580	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA	0.060000	0.592040	
mm_148835.1	chr19	6346318	6346518	+	1	NA	NA	NA	5258	NR_117093	26412	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0.010000	0.562189	
mm_90651.1	chr10	128747773	128747973	+	1	NA	NA	NA	-6	NM_030100	78428	Mm.27358	NM_030100	ENSMUSG00000064030	Pym1	A030010B05Rik|Pym|Wibg	PYM homolog 1, exon junction complex associated factor	protein-coding	0.065000	0.611940	
mm_149111.1	chr19	8966628	8966828	+	1	NA	NA	NA	-313	NM_026007	67160	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	0.035000	0.487562	
mm_78404.1	chr9	28944273	28944473	+	1	NA	NA	NA	1018756	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.005000	0.447761	
mm_126281.1	chr15	79209265	79209465	+	1	NA	NA	NA	-19808	NM_008837	18693	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	0.055000	0.611940	
mm_49082.1	chr6	6862871	6863071	+	1	NA	NA	NA	-363	NM_010057	13396	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding	0.055000	0.552239	
mm_138519.1	chr17	35237898	35238098	+	1	NA	NA	NA	1402	NM_023179	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.020000	0.487562	
mm_6287.1	chr1	69687080	69687280	-	1	NA	NA	NA	-1220	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.025000	0.492537	
mm_5391.1	chr1	31222561	31222761	-	1	NA	NA	NA	-5	NR_033445	70988	Mm.161414	NM_027637	ENSMUSG00000086727	4931428L18Rik	4930563O14Rik	RIKEN cDNA 4931428L18 gene	ncRNA	0.020000	0.512438	
mm_82066.1	chr9	122805508	122805708	+	1	NA	NA	NA	61	NM_001013405	382117	Mm.215892	NM_001013405	ENSMUSG00000046603	Tcaim	D9Ertd402e|Gm1129|TOAG-1	T cell activation inhibitor, mitochondrial	protein-coding	0.075000	0.626866	
mm_59702.1	chr7	28692907	28693107	+	1	NA	NA	NA	-137	NM_001163702	233040	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	0.040000	0.587065	
mm_17997.1	chr2	38190586	38190786	-	1	NA	NA	NA	96698	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.000000	0.333333	-20(GGCCTTTAAGGC,-,0.00),-19(GCCTTTAAGGCC,+,0.00),31(GCTTTTATGCTG,+,0.00)
mm_117694.1	chr13	94294928	94295128	-	1	NA	NA	NA	-9197	NM_001346609	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.010000	0.552239	
mm_107114.1	chr12	18135838	18136038	+	1	NA	NA	NA	-378572	NM_001033157	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.125000	0.771144	
mm_68891.1	chr7	126448272	126448472	-	1	NA	NA	NA	14701	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.020000	0.547264	
mm_146120.1	chr18	74442304	74442504	+	1	NA	NA	NA	-215	NM_201600	17919	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	0.170000	0.835821	-6(GGGCTTAAAGGC,-,0.00)
mm_63324.1	chr7	126941987	126942187	+	1	NA	NA	NA	7494	NM_001347657	233879	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0.015000	0.542289	
mm_163724.1	chr13	117909114	117909314	+	1	NA	NA	NA	-189203	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA	0.005000	0.452736	
mm_108285.1	chr12	79135555	79135755	+	1	NA	NA	NA	4867	NM_009705	11847	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.005000	0.457711	
mm_81706.1	chr9	111289803	111290003	+	1	NA	NA	NA	18058	NM_175266	77781	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	0.005000	0.437811	
mm_74078.1	chr8	122470130	122470330	+	1	NA	NA	NA	5834	NM_001033142	68718	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	0.045000	0.636816	
mm_21034.1	chr2	152490065	152490265	-	1	NA	NA	NA	-27	NM_001002791	442835	Mm.99065	NM_001002791	ENSMUSG00000027468	Defb22	9230002F21Rik	defensin beta 22	protein-coding	0.000000	0.487562	
mm_122572.1	chr14	50807629	50807829	-	1	NA	NA	NA	42	NR_002142	85029		NR_002142	ENSMUSG00000092837	Rpph1	Gm24821|H1RNA|Rmrp5|Rpr	ribonuclease P RNA component H1	ncRNA	0.070000	0.611940	
mm_168096.1	chr10	128821825	128822025	+	1	NA	NA	NA	154	NM_025364	66118	Mm.235562	NM_025364	ENSMUSG00000078427	Sarnp	1110005A23Rik|Cip29	SAP domain containing ribonucleoprotein	protein-coding	0.065000	0.611940	
mm_24404.1	chr3	90359533	90359733	+	1	NA	NA	NA	17979	NM_139304	229542	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	0.000000	0.353234	
mm_138090.1	chr17	34031997	34032197	+	1	NA	NA	NA	-253	NM_001205216	20182	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	0.130000	0.766169	
mm_73811.1	chr8	117364947	117365147	+	1	NA	NA	NA	15877	NM_028941	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.045000	0.537313	
mm_136597.1	chr17	5089799	5089999	+	1	NA	NA	NA	94825	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.015000	0.437811	
mm_14511.1	chr2	132263341	132263541	+	1	NA	NA	NA	293	NM_138651	110911	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.130000	0.721393	
mm_83721.1	chr9	50765831	50766031	-	1	NA	NA	NA	2	NM_001311073	68721	Mm.171374	NM_023483	ENSMUSG00000037971	1110032A03Rik	4930500N06Rik|c11orf1	RIKEN cDNA 1110032A03 gene	protein-coding	0.005000	0.467662	
mm_73929.1	chr8	119910720	119910920	+	1	NA	NA	NA	460	NM_001310630	22224	Mm.256910	NM_009462	ENSMUSG00000031826	Usp10	2610014N07Rik|UBPO|Uchrp|mKIAA0190	ubiquitin specific peptidase 10	protein-coding	0.160000	0.736318	
mm_132358.1	chr16	34651131	34651331	+	1	NA	NA	NA	20	NM_030744	76378	Mm.23515	NM_030744	ENSMUSG00000022832	Ropn1	1700008N21Rik|ODF6|RHPNAP1|Rppn|ropporin	ropporin, rhophilin associated protein 1	protein-coding	0.010000	0.452736	
mm_108355.1	chr12	80644383	80644583	+	1	NA	NA	NA	268	NM_026244	328133	Mm.238279	NM_026244	ENSMUSG00000048833	Slc39a9	2010002A02Rik|2610511I23Rik|4833420E20Rik|AW209151	solute carrier family 39 (zinc transporter), member 9	protein-coding	0.045000	0.587065	
mm_109818.1	chr12	3834484	3834684	-	1	NA	NA	NA	27424	NM_001271753	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.025000	0.582090	
mm_64765.1	chr7	4964303	4964503	-	1	NA	NA	NA	-55	NM_001146329	381836	Mm.297829	NM_001146329	ENSMUSG00000030433	Sbk2	Gm1079|Sgk069	SH3-binding domain kinase family, member 2	protein-coding	0.045000	0.626866	
mm_97518.1	chr11	78499750	78499950	+	1	NA	NA	NA	730	NM_011707	22370	Mm.3667	NM_011707	ENSMUSG00000017344	Vtn	AI256434|Vn	vitronectin	protein-coding	0.050000	0.572139	
mm_89149.1	chr10	86021923	86022123	+	1	NA	NA	NA	94	NM_153195	69754	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	0.130000	0.701493	
mm_58657.1	chr7	6415085	6415285	+	1	NA	NA	NA	10	NM_001134752	100042450	Mm.416919	NM_001134752	ENSMUSG00000093536	Smim17	Gm16532	small integral membrane protein 17	protein-coding	0.045000	0.691542	
mm_80045.1	chr9	69288292	69288492	+	1	NA	NA	NA	-1449	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.005000	0.398010	
mm_118546.1	chr14	17659163	17659363	+	1	NA	NA	NA	-1697	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.025000	0.492537	
mm_76609.1	chr8	90817299	90817499	-	1	NA	NA	NA	-11436	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.005000	0.492537	
mm_63519.1	chr7	127877038	127877238	+	1	NA	NA	NA	-315	NM_146259	244219	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.090000	0.636816	
mm_137291.1	chr17	24742357	24742557	+	1	NA	NA	NA	5864	NM_001346668	27361	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	0.025000	0.527363	
mm_105673.1	chr11	107469969	107470169	-	1	NA	NA	NA	651	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.070000	0.651741	
mm_982.1	chr1	58431299	58431499	+	1	NA	NA	NA	-7311	NR_027854	12747	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	0.005000	0.452736	89(GAGCATAAAGGC,-,0.00)
mm_83918.1	chr9	56506501	56506701	-	1	NA	NA	NA	87755	NM_025812	66867	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0.025000	0.656716	
mm_90535.1	chr10	128088239	128088439	+	1	NA	NA	NA	3053	NR_030442	751518		NR_030442	ENSMUSG00000093245	Mir677	Mirn677|mir-677|mmu-mir-677	microRNA 677	ncRNA	0.005000	0.512438	
mm_104346.1	chr11	94242848	94243048	-	1	NA	NA	NA	-369	NM_181819	278507	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	0.045000	0.592040	
mm_161882.1	chr18	37513530	37513730	+	1	NA	NA	NA	-22	NM_053146	93892	Mm.348053	NM_053146	ENSMUSG00000044022	Pcdhb21	Pcdhb18|PcdhbU	protocadherin beta 21	protein-coding	0.020000	0.457711	
mm_147246.1	chr18	38381075	38381275	-	1	NA	NA	NA	-37800	NM_022996	65113	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.010000	0.477612	87(CCCTCTAAAGGA,-,0.00)
mm_132282.1	chr16	33056457	33056657	+	1	NA	NA	NA	43	NM_021338	57808	Mm.19355	NM_021338	ENSMUSG00000060636	Rpl35a	2810431L15Rik|Rpl35	ribosomal protein L35A	protein-coding	0.070000	0.646766	
mm_6386.1	chr1	72849129	72849329	-	1	NA	NA	NA	23842	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.035000	0.616915	
mm_166074.1	chr4	135958487	135958687	+	1	NA	NA	NA	-6578	NM_178389	74246	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0.020000	0.592040	
mm_167618.1	chr9	57521278	57521478	+	1	NA	NA	NA	146	NM_007747	12858	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.130000	0.746269	
mm_132317.1	chr16	33754677	33754877	+	1	NA	NA	NA	-39260	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.010000	0.348259	
mm_111550.1	chr12	101028779	101028979	-	1	NA	NA	NA	104	NM_026681	68339	Mm.156217	NM_026681	ENSMUSG00000021182	Ccdc88c	0610010D24Rik|AV000935|AW324073|Daple|mKIAA1509	coiled-coil domain containing 88C	protein-coding	0.140000	0.761194	
mm_23775.1	chr3	76074510	76074710	+	1	NA	NA	NA	49	NM_178673	213262	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	0.060000	0.636816	
mm_136139.1	chr16	87432416	87432616	-	1	NA	NA	NA	90	NM_001081068	78913	Mm.249005	NM_001081068	ENSMUSG00000052299	Ltn1	4930528H02Rik|AV266914|C87237|Listerin|Rnf160|Zfp294	listerin E3 ubiquitin protein ligase 1	protein-coding	0.075000	0.656716	
mm_142623.1	chr17	47042974	47043174	-	1	NA	NA	NA	-32542	NM_001177374	224826	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|ENSMUSG00000043296|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0.045000	0.547264	
mm_89748.1	chr10	99261484	99261684	+	1	NA	NA	NA	-1647	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.125000	0.711443	
mm_26764.1	chr3	8829602	8829802	-	1	NA	NA	NA	94155	NM_025434	66230	Mm.38460	NM_025434	ENSMUSG00000040269	Mrps28	1500012D08Rik|AW061224	mitochondrial ribosomal protein S28	protein-coding	0.015000	0.482587	
mm_42751.1	chr5	120812547	120812747	+	1	NA	NA	NA	9	NM_001083925	23961	Mm.233471	NM_001083925	ENSMUSG00000029605	Oas1b	Flv|L1|Mmu-L1|Oas1|Oias-2|Oias2|Wnv	2'-5' oligoadenylate synthetase 1B	protein-coding	0.035000	0.552239	
mm_76683.1	chr8	94036917	94037117	-	1	NA	NA	NA	22	NM_026623	68219	Mm.354445	NM_026623	ENSMUSG00000031754	Nudt21	25kDa|3110048P04Rik|5730530J16Rik|AU014860|AW549947|Cpsf5	nudix (nucleoside diphosphate linked moiety X)-type motif 21	protein-coding	0.110000	0.656716	
mm_82163.1	chr9	123781934	123782134	+	1	NA	NA	NA	14823	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.005000	0.353234	
mm_169225.1	chr13	66862287	66862487	+	1	NA	NA	NA	42963	NM_026219	67530	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	0.010000	0.507463	
mm_78451.1	chr9	32239062	32239262	+	1	NA	NA	NA	14913	NM_177379	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.020000	0.363184	
mm_56227.1	chr6	90428328	90428528	-	1	NA	NA	NA	52	NM_173775	243538	Mm.386876	NM_173775	ENSMUSG00000048794	Cfap100	AW048498|C030041G11Rik|C230069K22Rik|Ccdc37	cilia and flagella associated protein 100	protein-coding	0.075000	0.661692	
mm_9142.1	chr1	170868522	170868722	-	1	NA	NA	NA	-851	NM_001081304	226641	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.050000	0.462687	
mm_44025.1	chr5	147430085	147430285	+	1	NA	NA	NA	-395	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.125000	0.701493	78(GAGTTTAAAAAC,-,0.00)
mm_129918.1	chr15	84192032	84192232	-	1	NA	NA	NA	-101	NM_178614	68653	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0.060000	0.592040	
mm_116251.1	chr13	33965624	33965824	-	1	NA	NA	NA	1065	NM_001163241	18105	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	NAD(P)H dehydrogenase, quinone 2	protein-coding	0.020000	0.432836	
mm_111759.1	chr12	103958830	103959030	-	1	NA	NA	NA	-2033	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	0.005000	0.587065	
mm_166942.1	chr7	43436914	43437114	+	1	NA	NA	NA	-124	NM_024253	72310	Mm.34613	NM_024253	ENSMUSG00000004612	Nkg7	2500004F03Rik	natural killer cell group 7 sequence	protein-coding	0.010000	0.547264	
mm_11397.1	chr2	31470168	31470368	+	1	NA	NA	NA	-2	NM_007494	11898	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.080000	0.711443	
mm_100509.1	chr11	120529093	120529293	+	1	NA	NA	NA	-1534	NM_008101	14527	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.020000	0.557214	
mm_42264.1	chr5	114131068	114131268	+	1	NA	NA	NA	12	NM_011677	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.100000	0.676617	
mm_149578.1	chr19	14664289	14664489	+	1	NA	NA	NA	-66206	NM_001302947	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.010000	0.487562	
mm_33725.1	chr4	134068336	134068536	+	1	NA	NA	NA	-16	NM_001162970	230806	Mm.240080	NM_001162970	ENSMUSG00000012123	Aim1l	-	absent in melanoma 1-like	protein-coding	0.010000	0.547264	
mm_161194.1	chr13	54766378	54766578	-	1	NA	NA	NA	-38	NM_033610	104069	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	0.060000	0.671642	
mm_88831.1	chr10	80806035	80806235	+	1	NA	NA	NA	887	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.015000	0.616915	
mm_87906.1	chr10	62252649	62252849	+	1	NA	NA	NA	311	NM_009314	21337	Mm.8054	NM_009314	ENSMUSG00000020081	Tacr2	Nk2r|Skr|Tac2r	tachykinin receptor 2	protein-coding	0.045000	0.577114	
mm_81961.1	chr9	120929163	120929363	+	1	NA	NA	NA	1539	NR_040753	78060	Mm.463884	NR_040753	ENSMUSG00000086365	4930593C16Rik	-	RIKEN cDNA 4930593C16 gene	ncRNA	0.040000	0.517413	
mm_163423.1	chr12	81421834	81422034	-	1	NA	NA	NA	105	NM_009620	11498	Mm.408462	NM_009620	ENSMUSG00000072972	Adam4	AV274654|tMDCV	a disintegrin and metallopeptidase domain 4	protein-coding	0.005000	0.502488	
mm_144376.1	chr18	20558127	20558327	+	1	NA	NA	NA	153	NM_007883	13511	Mm.345891	NM_007883	ENSMUSG00000044393	Dsg2	AA408168|D18Ertd293e	desmoglein 2	protein-coding	0.115000	0.761194	
mm_159191.1	chr2	118400479	118400679	+	1	NA	NA	NA	11467	NM_001177806	27103	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	0.015000	0.462687	
mm_163043.1	chr11	54860673	54860873	+	1	NA	NA	NA	-182	NM_029327	75530	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	0.080000	0.567164	
mm_158890.1	chr1	15312456	15312656	+	1	NA	NA	NA	104	NM_001098528	98741	Mm.156081	NM_001033195	ENSMUSG00000092083	Kcnb2	9630047L19Rik|BB130875|Kv2.2	potassium voltage gated channel, Shab-related subfamily, member 2	protein-coding	0.040000	0.527363	
mm_77274.1	chr8	116573864	116574064	-	1	NA	NA	NA	68949	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.020000	0.407960	
mm_147887.1	chr18	64888642	64888842	-	1	NA	NA	NA	986	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.015000	0.492537	-99(GGCTTTTAAAAA,-,0.00),-98(GCTTTTAAAAAC,+,0.00),-98(GCTTTTAAAAAC,-,0.00)
mm_14843.1	chr2	147515881	147516081	+	1	NA	NA	NA	150987	NM_008780	18503	Mm.315502	NM_008780	ENSMUSG00000037034	Pax1	Pax-1|hbs|hunchback|un|undulated|wt	paired box 1	protein-coding	0.000000	0.452736	
mm_32097.1	chr4	98546655	98546855	+	1	NA	NA	NA	121	NM_001005787	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.015000	0.517413	85(GCCCTTTAAAAG,-,0.00),86(CCCTTTAAAAGA,-,0.00),87(CCTTTAAAAGAA,+,0.00)
mm_153818.1	chr19	46267588	46267788	-	1	NA	NA	NA	-37049	NM_001177369	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.015000	0.552239	
mm_151321.1	chr19	55892642	55892842	+	1	NA	NA	NA	-2579	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.015000	0.407960	
mm_130538.1	chr15	98937301	98937501	-	1	NA	NA	NA	-3011	NM_011654	22143	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.010000	0.527363	
mm_86474.1	chr10	4611893	4612093	+	1	NA	NA	NA	4	NM_007956	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.020000	0.522388	
mm_9209.1	chr1	171229769	171229969	-	1	NA	NA	NA	4480	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.020000	0.512438	
mm_36665.1	chr4	95052076	95052276	-	1	NA	NA	NA	46	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.050000	0.572139	
mm_78236.1	chr9	21616206	21616406	+	1	NA	NA	NA	137	NM_001174078	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.125000	0.716418	
mm_12756.1	chr2	79255343	79255543	+	1	NA	NA	NA	17	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.050000	0.686567	
mm_133858.1	chr16	96273510	96273710	+	1	NA	NA	NA	-7422	NM_033149	93961	Mm.154783	NM_033149	ENSMUSG00000074892	B3galt5	1190002B21Rik|AU045265|b3Galt-V	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5	protein-coding	0.010000	0.497512	
mm_167799.1	chr9	123927443	123927643	+	1	NA	NA	NA	41149	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.045000	0.547264	
mm_132269.1	chr16	32877990	32878190	+	1	NA	NA	NA	306	NM_001159349	69823	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	0.105000	0.746269	
mm_92885.1	chr10	82763870	82764070	-	1	NA	NA	NA	171	NM_010914	18045	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	0.105000	0.616915	
mm_152125.1	chr19	6995961	6996161	-	1	NA	NA	NA	-24	NM_026675	68323	Mm.49041	NM_026675	ENSMUSG00000037349	Nudt22	0610006K04Rik|AI851793|AW545547	nudix (nucleoside diphosphate linked moiety X)-type motif 22	protein-coding	0.040000	0.616915	
mm_62738.1	chr7	111028675	111028875	+	1	NA	NA	NA	-176	NM_009431	22083	Mm.255858	NM_009431	ENSMUSG00000005609	Ctr9	AA409336|Sh2bp1|Tsbp|Tsp|mKIAA0155	CTR9 homolog, Paf1/RNA polymerase II complex component	protein-coding	0.080000	0.606965	
mm_133534.1	chr16	91046845	91047045	+	1	NA	NA	NA	-2566	NM_026110	67367	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.010000	0.402985	
mm_144953.1	chr18	37812574	37812774	+	1	NA	NA	NA	-2405	NM_033582	93707	Mm.247203	NM_033582	ENSMUSG00000023036	Pcdhgc4	-	protocadherin gamma subfamily C, 4	protein-coding	0.000000	0.422886	-38(GTTTAAATGGCC,+,0.00)
mm_148172.1	chr18	78101315	78101515	-	1	NA	NA	NA	22011	NM_001171010	108052	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0.010000	0.388060	-66(GTGCTTATAAGG,-,0.00),-64(GCTTATAAGGCA,+,0.00)
mm_162821.1	chr10	80752253	80752453	+	1	NA	NA	NA	-2853	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.010000	0.532338	
mm_128739.1	chr15	64312400	64312600	-	1	NA	NA	NA	173	NM_001276462	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.155000	0.746269	
mm_100096.1	chr11	115612507	115612707	+	1	NA	NA	NA	-104	NM_001243586	69674	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	0.215000	0.840796	
mm_140230.1	chr17	84086516	84086716	+	1	NA	NA	NA	7956	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.030000	0.542289	
mm_47163.1	chr5	120711603	120711803	-	1	NA	NA	NA	-34	NM_008052	14357	Mm.1645	NM_008052	ENSMUSG00000029603	Dtx1	Fxit1|mKIAA4160	deltex 1, E3 ubiquitin ligase	protein-coding	0.125000	0.701493	
mm_170026.1	chr17	21679862	21680062	+	1	NA	NA	NA	-10250	NR_045766	100310809	Mm.293030	NR_045766		Gm10509	ENSMUSG00000073448	zinc finger protein 51 pseudogene	pseudo	0.030000	0.557214	
mm_171411.1	chr4	129542558	129542758	-	1	NA	NA	NA	-12	NM_008228	433759	Mm.202504	NM_008228	ENSMUSG00000028800	Hdac1	HD1|Hdac1-ps|MommeD5|RPD3	histone deacetylase 1	protein-coding	0.120000	0.716418	
mm_171923.1	chr5	58726477	58726677	+	1	NA	NA	NA	-273579	NR_046190	78163	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA	0.045000	0.616915	
mm_164042.1	chr14	92053089	92053289	-	1	NA	NA	NA	1835699	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.288557	67(CCCTTTAAAAAG,+,0.00),67(CCCTTTAAAAAG,-,0.00),68(CCTTTAAAAAGG,+,0.00),69(CTTTAAAAAGGA,+,0.00)
mm_29269.1	chr3	107459604	107459804	-	1	NA	NA	NA	-806	NM_145922	99738	Mm.101976	NM_145922	ENSMUSG00000027895	Kcnc4	AI850292|KSHIIIC|Kcr2-4|Kv3.4	potassium voltage gated channel, Shaw-related subfamily, member 4	protein-coding	0.115000	0.756219	
mm_106132.1	chr11	116466100	116466300	-	1	NA	NA	NA	-11853	NM_001033267	217341	Mm.387352	NM_001033267	ENSMUSG00000070331	Qrich2	Gm66	glutamine rich 2	protein-coding	0.060000	0.636816	
mm_139370.1	chr17	51826632	51826832	+	1	NA	NA	NA	-144	NM_001163631	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.010000	0.577114	
mm_9393.1	chr1	172219380	172219580	-	1	NA	NA	NA	415	NM_009813	12372	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.040000	0.537313	
mm_124931.1	chr15	12204957	12205157	+	1	NA	NA	NA	-37	NM_172958	268783	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.155000	0.791045	
mm_140710.1	chr17	14943006	14943206	-	1	NA	NA	NA	18	NM_175173	71682	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	0.075000	0.616915	
mm_139799.1	chr17	66101607	66101807	+	1	NA	NA	NA	-148	NM_028388	72900	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH dehydrogenase (ubiquinone) flavoprotein 2	protein-coding	0.090000	0.646766	-32(GTCCCTAAAAGG,-,0.00),-30(CCCTAAAAGGCC,+,0.00)
mm_164137.1	chr15	52387048	52387248	+	1	NA	NA	NA	91595	NM_172816	239436	Mm.208831	NM_172816	ENSMUSG00000022315	Slc30a8	C820002P14Rik|ZnT-8|ZnT8	solute carrier family 30 (zinc transporter), member 8	protein-coding	0.010000	0.517413	
mm_51481.1	chr6	83034120	83034320	+	1	NA	NA	NA	-4	NM_013586	16950	Mm.380433	NM_013586	ENSMUSG00000000693	Loxl3	Lor2|Loxl2	lysyl oxidase-like 3	protein-coding	0.030000	0.577114	
mm_156522.1	chrX	150594231	150594431	+	1	NA	NA	NA	4410	NM_008824	18639	Mm.249131	NM_008824	ENSMUSG00000025271	Pfkfb1	PFK/FBPase 1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	protein-coding	0.005000	0.492537	
mm_20795.1	chr2	144255303	144255503	-	1	NA	NA	NA	10799	NR_030762	100313519	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.010000	0.452736	
mm_10352.1	chr2	11689858	11690058	+	1	NA	NA	NA	-15335	NM_001271498	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.005000	0.427861	39(GCTTTAATGGGA,+,0.00)
mm_139707.1	chr17	57458791	57458991	+	1	NA	NA	NA	86423	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.000000	0.492537	34(GACTTTAAGAGG,-,0.00)
mm_117457.1	chr13	74808770	74808970	-	1	NA	NA	NA	-110	NM_001301153	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.015000	0.512438	
mm_104369.1	chr11	94352049	94352249	-	1	NA	NA	NA	24148	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.055000	0.621891	
mm_10703.1	chr2	22773931	22774131	+	1	NA	NA	NA	-296	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.010000	0.467662	
mm_23796.1	chr3	79629058	79629258	+	1	NA	NA	NA	79	NM_029482	75939	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	0.100000	0.656716	
mm_58945.1	chr7	18564987	18565187	+	1	NA	NA	NA	2218	NM_001037168	545925	Mm.440302	NM_001037168	ENSMUSG00000070797	Psg27	EG545925|cea15	pregnancy-specific glycoprotein 27	protein-coding	0.005000	0.398010	
mm_14824.1	chr2	147012948	147013148	+	1	NA	NA	NA	-12	NM_011917	24128	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	0.095000	0.646766	
mm_45390.1	chr5	66150590	66150790	-	1	NA	NA	NA	288	NM_001291226	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.045000	0.462687	
mm_75970.1	chr8	72002485	72002685	-	1	NA	NA	NA	7041	NM_024444	72054	Mm.160020	NM_024444	ENSMUSG00000003484	Cyp4f18	1810054N16Rik|Cyp4f3|Cypf18	cytochrome P450, family 4, subfamily f, polypeptide 18	protein-coding	0.005000	0.577114	
mm_127073.1	chr15	97377067	97377267	+	1	NA	NA	NA	-129880	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.045000	0.572139	-99(CGCTTTAAAAAT,-,0.00)
mm_112058.1	chr12	111907990	111908190	-	1	NA	NA	NA	-35	NM_011625	21981	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.155000	0.781095	
mm_157195.1	chrX	12080479	12080679	-	1	NA	NA	NA	-26	NM_029510	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.095000	0.736318	
mm_113508.1	chr13	37598667	37598867	+	1	NA	NA	NA	-227271	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.010000	0.487562	
mm_5457.1	chr1	36296568	36296768	-	1	NA	NA	NA	-11065	NM_001290727	214855	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.010000	0.537313	
mm_129139.1	chr15	76199865	76200065	-	1	NA	NA	NA	-130	NM_001163549	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.035000	0.641791	
mm_53312.1	chr6	129182614	129182814	+	1	NA	NA	NA	2099	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.005000	0.497512	
mm_59791.1	chr7	28982816	28983016	+	1	NA	NA	NA	62	NM_008279	26411	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.020000	0.597015	
mm_35878.1	chr4	49536792	49536992	-	1	NA	NA	NA	12654	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.020000	0.482587	
mm_83210.1	chr9	42022325	42022525	-	1	NA	NA	NA	101864	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.035000	0.472637	
mm_141352.1	chr17	28622391	28622591	-	1	NA	NA	NA	-37	NM_016795	20815	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	0.150000	0.746269	
mm_154063.1	chr19	55217472	55217672	-	1	NA	NA	NA	23664	NM_001081076	73707	Mm.489987	NM_001081076	ENSMUSG00000055523	Gucy2g	2410077I05Rik|GC-G	guanylate cyclase 2g	protein-coding	0.030000	0.502488	-31(CTTTTTATAGCC,+,0.00),39(CCCTAAATACGC,+,0.00)
mm_158485.1	chrX	142318565	142318765	-	1	NA	NA	NA	-12467	NM_021487	66240	Mm.58507	NM_021487	ENSMUSG00000090122	Kcne1l	1500015C14Rik|Kcne5|Mink	potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	protein-coding	0.015000	0.393035	
mm_101610.1	chr11	35817342	35817542	-	1	NA	NA	NA	17086	NM_025936	104458	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.010000	0.422886	
mm_85977.1	chr9	112164451	112164651	-	1	NA	NA	NA	21398	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.005000	0.343284	
mm_133470.1	chr16	89250900	89251100	+	1	NA	NA	NA	45139	NM_001163615	622935	Mm.459837	NM_001163615	ENSMUSG00000091039	Krtap20-2	1190004K03Rik|EG622935|Gm6371	keratin associated protein 20-2	protein-coding	0.010000	0.452736	-33(GTGTATAAAAGG,-,0.00)
mm_129893.1	chr15	83562932	83563132	-	1	NA	NA	NA	-541	NM_009775	12257	Mm.1508	NM_009775	ENSMUSG00000041736	Tspo	Bzrp|IBP|PBR|Tspo1	translocator protein	protein-coding	0.010000	0.537313	
mm_117953.1	chr13	99444332	99444532	-	1	NA	NA	NA	-31606	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.020000	0.552239	
mm_96626.1	chr11	69156815	69157015	+	1	NA	NA	NA	-157	NM_009659	11686	Mm.340329	NM_009659	ENSMUSG00000032807	Alox12b	12R-LOX|Aloxe2|e-LOX2	arachidonate 12-lipoxygenase, 12R type	protein-coding	0.035000	0.621891	
mm_140231.1	chr17	84100710	84100910	+	1	NA	NA	NA	22150	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.025000	0.572139	
mm_50663.1	chr6	51523861	51524061	+	1	NA	NA	NA	58	NM_001127349	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.145000	0.746269	
mm_67351.1	chr7	79836156	79836356	-	1	NA	NA	NA	6096	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.035000	0.537313	
mm_20711.1	chr2	134596562	134596762	-	1	NA	NA	NA	-42310	NM_010403	15112	Mm.26634	NM_010403	ENSMUSG00000027261	Hao1	GOX|Gox1|Hao-1	hydroxyacid oxidase 1, liver	protein-coding	0.010000	0.358209	-45(GGGTTTTAATGG,-,0.00)
mm_27765.1	chr3	69861285	69861485	-	1	NA	NA	NA	-1491	NM_001286959	66183	Mm.45481	NM_133675	ENSMUSG00000043461	Sptssb	1110032A04Rik|ADMP|Sssptb	serine palmitoyltransferase, small subunit B	protein-coding	0.035000	0.557214	
mm_161712.1	chr17	25162242	25162442	+	1	NA	NA	NA	-119	NM_001079929	207209	Mm.207121	NM_001079929	ENSMUSG00000059562	Ccdc154	Ccdc157|Gm317	coiled-coil domain containing 154	protein-coding	0.000000	0.497512	28(GGGCATATGAGG,-,0.00)
mm_170234.1	chr17	87435747	87435947	-	1	NA	NA	NA	-8106	NM_029298	75467	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0.015000	0.502488	
mm_9961.1	chr1	191098158	191098358	-	1	NA	NA	NA	-156	NM_030060	381319	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.095000	0.746269	
mm_147087.1	chr18	35648287	35648487	-	1	NA	NA	NA	980	NM_027222	69816	Mm.27252	NM_027222	ENSMUSG00000024353	Mzb1	2010001M09Rik|AV064572|PACAP|pERp1	marginal zone B and B1 cell-specific protein 1	protein-coding	0.020000	0.572139	
mm_115336.1	chr13	112482075	112482275	+	1	NA	NA	NA	18105	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.010000	0.487562	
mm_151943.1	chr19	5800872	5801072	-	1	NA	NA	NA	1700	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.020000	0.472637	
mm_120240.1	chr14	62934960	62935160	+	1	NA	NA	NA	49450	NM_001037751	432867	Mm.99387	NM_001037751	ENSMUSG00000075574	Defb48	Defb42|EG432867	defensin beta 48	protein-coding	0.020000	0.323383	
mm_92090.1	chr10	62865160	62865360	-	1	NA	NA	NA	14754	NM_027384	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.020000	0.527363	77(ACTTTTAGGGGG,+,0.00)
mm_166339.1	chr5	114853482	114853682	-	1	NA	NA	NA	-132	NM_026263	67593	Mm.251409	NM_026263	ENSMUSG00000029564	4930519G04Rik	1700014B12Rik	RIKEN cDNA 4930519G04 gene	protein-coding	0.010000	0.582090	
mm_79635.1	chr9	59542688	59542888	+	1	NA	NA	NA	3248	NM_010421	15211	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.005000	0.507463	
mm_58428.1	chr7	3297298	3297498	+	1	NA	NA	NA	4370	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.015000	0.547264	
mm_25628.1	chr3	119084818	119085018	+	1	NA	NA	NA	522740	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.000000	0.223881	
mm_123280.1	chr14	61419604	61419804	-	1	NA	NA	NA	20243	NM_008466	16648	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0.000000	0.348259	
mm_46621.1	chr5	108369319	108369519	-	1	NA	NA	NA	-18954	NM_008806	18587	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0.075000	0.592040	
mm_74670.1	chr8	13785392	13785592	-	1	NA	NA	NA	-123	NM_025924	67031	Mm.44858	NM_025924	ENSMUSG00000038398	Upf3a	2600001C03Rik|4930546M19Rik|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding	0.100000	0.686567	-30(GTTTTTAAAAGA,-,0.00),-29(TTTTTAAAAGAC,+,0.00)
mm_25990.1	chr3	134199977	134200177	+	1	NA	NA	NA	-36418	NM_001004367	319478	Mm.224814	NM_001004367	ENSMUSG00000044365	Cxxc4	9330210J02Rik|C030003J12Rik|Idax	CXXC finger 4	protein-coding	0.025000	0.497512	
mm_89486.1	chr10	93678632	93678832	+	1	NA	NA	NA	4590	NR_038017	100504069	Mm.391412	NR_038017	ENSMUSG00000085723	Gm15915	OTTMUSG00000027787	predicted gene 15915	ncRNA	0.025000	0.472637	-32(GTTTTTAAACCT,+,0.00)
mm_133611.1	chr16	91545584	91545784	+	1	NA	NA	NA	-1410	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.015000	0.542289	
mm_111633.1	chr12	102495433	102495633	-	1	NA	NA	NA	25623	NM_013747	27277	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	0.005000	0.378109	
mm_93069.1	chr10	89257604	89257804	-	1	NA	NA	NA	86	NM_001277188	320091	Mm.236464	NM_178773	ENSMUSG00000035189	Ano4	A330096O15Rik|Gm65|Tmem16d	anoctamin 4	protein-coding	0.035000	0.631841	
mm_93715.1	chr10	118889148	118889348	-	1	NA	NA	NA	-20345	NM_001014390	69181	Mm.45565	NM_001014390	ENSMUSG00000028630	Dyrk2	1810038L18Rik	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2	protein-coding	0.010000	0.467662	
mm_87636.1	chr10	58351858	58352058	+	1	NA	NA	NA	-19496	NM_201242	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.000000	0.363184	
mm_17682.1	chr2	32308917	32309117	-	1	NA	NA	NA	-9248	NR_128563	104795665		NR_128563	ENSMUSG00000092765	Gm23363	Mir3154|mir-3154|mmu-mir-3154	predicted gene, 23363	ncRNA	0.045000	0.611940	
mm_156042.1	chrX	108109877	108110077	+	1	NA	NA	NA	-161541	NM_001033252	213450	Mm.300779	NM_001033252	ENSMUSG00000073006	Gm732	-	predicted gene 732	protein-coding	0.010000	0.407960	
mm_84773.1	chr9	75643129	75643329	-	1	NA	NA	NA	17497	NM_027309	70082	Mm.19119	NM_027309	ENSMUSG00000032184	Lysmd2	2210402C18Rik|AV033872|AW538442	LysM, putative peptidoglycan-binding, domain containing 2	protein-coding	0.000000	0.398010	-2(GGGTATAAAAGT,-,0.00)
mm_71545.1	chr8	47824365	47824565	+	1	NA	NA	NA	-17	NM_029383	75677	Mm.390033	NM_029383	ENSMUSG00000038064	Cldn22	2210404A22Rik|5330431C14Rik|9530051B05Rik	claudin 22	protein-coding	0.040000	0.497512	
mm_48616.1	chr5	144761471	144761671	-	1	NA	NA	NA	7	NM_177735	243339	Mm.126793	NM_177735	ENSMUSG00000043388	Tmem130	BC067004|C130036G08	transmembrane protein 130	protein-coding	0.095000	0.686567	
mm_36415.1	chr4	78211643	78211843	-	1	NA	NA	NA	152	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.120000	0.686567	-30(CACTTTTAAAGA,-,0.00),-29(ACTTTTAAAGAA,+,0.00)
mm_155003.1	chrX	41400563	41400763	+	1	NA	NA	NA	-638	NM_016886	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding	0.040000	0.492537	-95(TCTTTAAGACGC,+,0.00),-59(GACTTTTAAAAA,-,0.00)
mm_139693.1	chr17	57438301	57438501	+	1	NA	NA	NA	79715	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.373134	
mm_146102.1	chr18	73963501	73963701	+	1	NA	NA	NA	-54306	NR_045390	77855	Mm.410760	NR_045390	ENSMUSG00000090263	D730045A05Rik	-	RIKEN cDNA D730045A05 gene	ncRNA	0.035000	0.537313	-32(GGGTATTAAAGG,-,0.00)
mm_153359.1	chr19	40180299	40180499	-	1	NA	NA	NA	6887	NM_145499	226105	Mm.29119	NM_145499	ENSMUSG00000060613	Cyp2c70	-	cytochrome P450, family 2, subfamily c, polypeptide 70	protein-coding	0.020000	0.368159	
mm_14407.1	chr2	130274346	130274546	+	1	NA	NA	NA	34	NM_024193	67134	Mm.29363	NM_024193	ENSMUSG00000027405	Nop56	2310044F10Rik|Nol5a	NOP56 ribonucleoprotein	protein-coding	0.090000	0.616915	
mm_18085.1	chr2	44927100	44927300	-	1	NA	NA	NA	-65578	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.115000	0.776119	
mm_50863.1	chr6	55336331	55336531	+	1	NA	NA	NA	132	NM_007472	11826	Mm.18625	NM_007472	ENSMUSG00000004655	Aqp1	CHIP28	aquaporin 1	protein-coding	0.020000	0.611940	-32(CCCTATAAATAG,-,0.00),-30(CTATAAATAGGC,+,0.00)
mm_53177.1	chr6	125349714	125349914	+	1	NA	NA	NA	91	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.050000	0.582090	
mm_100818.1	chr11	5152145	5152345	-	1	NA	NA	NA	-23	NM_080595	140703	Mm.840	NM_080595	ENSMUSG00000034164	Emid1	AW122071|CO-5|Emu1	EMI domain containing 1	protein-coding	0.165000	0.825871	
mm_126484.1	chr15	81588854	81589054	+	1	NA	NA	NA	2740	NM_177821	328572	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.000000	0.427861	
mm_12480.1	chr2	71529495	71529695	+	1	NA	NA	NA	150	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.145000	0.741294	
mm_61162.1	chr7	59228677	59228877	+	1	NA	NA	NA	25	NM_011668	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|mKIAA4216	ubiquitin protein ligase E3A	protein-coding	0.120000	0.666667	
mm_114453.1	chr13	66994816	66995016	+	1	NA	NA	NA	37489	NR_045851	71226	Mm.399574	NR_045851		4933433G19Rik	-	RIKEN cDNA 4933433G19 gene	ncRNA	0.010000	0.318408	-71(TCCTCTATAGGC,-,0.00)
mm_6320.1	chr1	71605875	71606075	-	1	NA	NA	NA	47259	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.005000	0.482587	
mm_67243.1	chr7	75308939	75309139	-	1	NA	NA	NA	223	NM_153579	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.065000	0.656716	
mm_20603.1	chr2	131434293	131434493	-	1	NA	NA	NA	-57469	NM_001177834	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.005000	0.462687	
mm_81180.1	chr9	107399723	107399923	+	1	NA	NA	NA	-57	NM_001174049	56808	Mm.273084	NM_020263	ENSMUSG00000010066	Cacna2d2	Cacna2d|a2d2|du|mKIAA0558|td|torpid	calcium channel, voltage-dependent, alpha 2/delta subunit 2	protein-coding	0.145000	0.771144	
mm_107631.1	chr12	51838439	51838639	+	1	NA	NA	NA	-9003	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.015000	0.477612	
mm_76499.1	chr8	86745902	86746102	-	1	NA	NA	NA	4	NM_009172	20437	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	seven in absentia 1A	protein-coding	0.190000	0.810945	
mm_138709.1	chr17	36042952	36043152	+	1	NA	NA	NA	91	NM_001034909	547347	Mm.484641	NM_001034909	ENSMUSG00000073407	Gm6034	EG547347|H2-gs14-2	predicted gene 6034	protein-coding	0.015000	0.562189	
mm_145247.1	chr18	51231829	51232029	+	1	NA	NA	NA	114031	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0.000000	0.358209	
mm_78237.1	chr9	21616270	21616470	+	1	NA	NA	NA	201	NM_001174078	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.090000	0.651741	
mm_170955.1	chr2	5379263	5379463	-	1	NA	NA	NA	-27	NR_030601	100124465		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.050000	0.492537	
mm_116690.1	chr13	49309106	49309306	-	1	NA	NA	NA	2	NM_015759	30938	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.020000	0.482587	
mm_75144.1	chr8	35495416	35495616	-	1	NA	NA	NA	17	NM_026067	67276	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	0.160000	0.711443	
mm_150030.1	chr19	29373736	29373936	+	1	NA	NA	NA	6398	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.045000	0.532338	
mm_60738.1	chr7	45439802	45440002	+	1	NA	NA	NA	5063	NM_030678	14936	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0.025000	0.537313	
mm_51709.1	chr6	86669527	86669727	+	1	NA	NA	NA	-468	NM_010751	17119	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.045000	0.671642	
mm_23868.1	chr3	83028479	83028679	+	1	NA	NA	NA	2426	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.025000	0.472637	
mm_47959.1	chr5	135586046	135586246	-	1	NA	NA	NA	-13103	NM_019577	56221	Mm.31505	NM_019577	ENSMUSG00000004814	Ccl24	CKb-6|MPIF-2|Scya24	chemokine (C-C motif) ligand 24	protein-coding	0.005000	0.547264	
mm_83549.1	chr9	46242229	46242429	-	1	NA	NA	NA	1485	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.015000	0.512438	
mm_106479.1	chr11	120151174	120151374	-	1	NA	NA	NA	77	NM_001164799	72055	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0.075000	0.646766	
mm_110962.1	chr12	76822300	76822500	-	1	NA	NA	NA	124	NM_134050	104886	Mm.172847	NM_134050	ENSMUSG00000021062	Rab15	2310012G06Rik|AI840042	RAB15, member RAS oncogene family	protein-coding	0.135000	0.766169	
mm_56196.1	chr6	88841778	88841978	-	1	NA	NA	NA	57	NM_030251	80283	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.115000	0.696517	
mm_90732.1	chr10	5289362	5289562	-	1	NA	NA	NA	-94755	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.045000	0.601990	
mm_138982.1	chr17	45459158	45459358	+	1	NA	NA	NA	15680	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.015000	0.577114	
mm_61356.1	chr7	68418355	68418555	+	1	NA	NA	NA	1031	NR_046208	71244	Mm.410787	NR_046208	ENSMUSG00000108924	4933436H12Rik	-	RIKEN cDNA 4933436H12 gene	ncRNA	0.015000	0.412935	
mm_172879.1	chr9	47958311	47958511	-	1	NA	NA	NA	-140203	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.030000	0.492537	
mm_25069.1	chr3	99296426	99296626	+	1	NA	NA	NA	42766	NM_009323	21384	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0.005000	0.482587	
mm_7622.1	chr1	127207169	127207369	-	1	NA	NA	NA	2283	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.005000	0.437811	-37(GTCCCTAAAAAG,-,0.00),-35(CCCTAAAAAGGG,+,0.00),87(TCCTCTAAAGGG,-,0.00),88(CCTCTAAAGGGG,+,0.00)
mm_56184.1	chr6	88465184	88465384	-	1	NA	NA	NA	-125	NM_019685	56505	Mm.42195	NM_019685	ENSMUSG00000030079	Ruvbl1	2510009G06Rik|Pontin52|Tip49a	RuvB-like protein 1	protein-coding	0.025000	0.432836	84(CTCTTTTAATGC,-,0.00)
mm_136655.1	chr17	5975716	5975916	+	1	NA	NA	NA	230	NM_011523	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.040000	0.547264	
mm_2319.1	chr1	92049020	92049220	+	1	NA	NA	NA	131221	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.000000	0.467662	
mm_74580.1	chr8	11239077	11239277	-	1	NA	NA	NA	-73628	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.035000	0.552239	
mm_53214.1	chr6	126808245	126808445	+	1	NA	NA	NA	40799	NM_025358	66108	Mm.29939	NM_025358	ENSMUSG00000000399	Ndufa9	1010001N11Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9	protein-coding	0.015000	0.517413	
mm_139486.1	chr17	56079560	56079760	+	1	NA	NA	NA	29	NM_001304785	15193	Mm.12966	NM_008233	ENSMUSG00000002833	Hdgfrp2	HRP-2	hepatoma-derived growth factor, related protein 2	protein-coding	0.135000	0.721393	
mm_19784.1	chr2	106974349	106974549	-	1	NA	NA	NA	-52	NM_001025102	212772	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	0.075000	0.661692	
mm_3787.1	chr1	156939573	156939773	+	1	NA	NA	NA	-47	NM_023884	78255	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0.195000	0.840796	
mm_141687.1	chr17	33951622	33951822	-	1	NA	NA	NA	-234	NM_019420	54218	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	0.030000	0.572139	
mm_145643.1	chr18	61118880	61119080	+	1	NA	NA	NA	1512	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.015000	0.557214	
mm_124536.1	chr14	122451071	122451271	-	1	NA	NA	NA	-25	NR_033326	328479	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.060000	0.661692	49(CGCTCTTAAAGA,-,0.00),50(GCTCTTAAAGAG,+,0.00),52(TCTTAAAGAGAC,+,0.00)
mm_172350.1	chr7	11397818	11398018	+	1	NA	NA	NA	3	NM_001110316	665902	Mm.425380	NM_001110316	ENSMUSG00000070828	Zscan4f	C330039H09Rik	zinc finger and SCAN domain containing 4F	protein-coding	0.015000	0.467662	-37(CGCTATAAAAGG,-,0.00)
mm_67752.1	chr7	92653918	92654118	-	1	NA	NA	NA	15894	NM_029078	74737	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	0.000000	0.363184	
mm_55472.1	chr6	68769053	68769253	-	1	NA	NA	NA	558021	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.368159	-95(AGGTTTATAAGC,-,0.00),-14(TGCTTTAAAGAG,-,0.00)
mm_117035.1	chr13	58274411	58274611	-	1	NA	NA	NA	-323	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.135000	0.771144	
mm_144555.1	chr18	31634270	31634470	+	1	NA	NA	NA	-13	NM_172965	269003	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0.080000	0.651741	
mm_129604.1	chr15	79892958	79893158	-	1	NA	NA	NA	80	NR_030675	109361	Mm.394656	NR_030675		D730005E14Rik	-	RIKEN cDNA D730005E14 gene	ncRNA	0.010000	0.497512	
mm_126321.1	chr15	79733867	79734067	+	1	NA	NA	NA	8569	NM_194342	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.010000	0.482587	-8(CGCCTTTAGAGG,-,0.00),-7(GCCTTTAGAGGC,+,0.00)
mm_2964.1	chr1	133019562	133019762	+	1	NA	NA	NA	5754	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	0.000000	0.462687	
mm_23384.1	chr3	56325187	56325387	+	1	NA	NA	NA	-141586	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.015000	0.552239	
mm_172063.1	chr6	132941092	132941292	-	1	NA	NA	NA	-9910	NM_207029	387354	Mm.377915	NM_207029	ENSMUSG00000063762	Tas2r129	T2R29|Tas2r29|mGR29|mt2r60	taste receptor, type 2, member 129	protein-coding	0.040000	0.507463	-29(CTTTAAATACCC,+,0.00)
mm_108773.1	chr12	89812378	89812578	+	1	NA	NA	NA	-5	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.050000	0.572139	
mm_134266.1	chr16	13902877	13903077	-	1	NA	NA	NA	168	NM_001039533	94184	Mm.171484	NM_053181	ENSMUSG00000022680	Pdxdc1	2210010A19Rik|AA415817|Kiaa0251-hp	pyridoxal-dependent decarboxylase domain containing 1	protein-coding	0.125000	0.746269	
mm_47600.1	chr5	125042706	125042906	-	1	NA	NA	NA	39331	NM_028443	73121	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.040000	0.651741	
mm_53068.1	chr6	124914548	124914748	+	1	NA	NA	NA	-2943	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.000000	0.517413	
mm_127472.1	chr15	101272955	101273155	+	1	NA	NA	NA	6209	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.025000	0.592040	
mm_163591.1	chr13	41136990	41137190	-	1	NA	NA	NA	19079	NM_001324525	637277		NM_001324525		Sycp2l	EG621792|Gm268|Gm40956	synaptonemal complex protein 2-like	protein-coding	0.005000	0.487562	
mm_7302.1	chr1	97977070	97977270	-	1	NA	NA	NA	70623	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA	0.120000	0.691542	
mm_45681.1	chr5	77350972	77351172	-	1	NA	NA	NA	40588	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.005000	0.383085	-64(GTCCAGAAAAGC,-,0.00),89(TCATTTAAAAGG,-,0.00)
mm_45640.1	chr5	76905350	76905550	-	1	NA	NA	NA	64	NM_173765	231326	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	0.120000	0.696517	
mm_129776.1	chr15	82792518	82792718	-	1	NA	NA	NA	1627	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.025000	0.497512	
mm_30147.1	chr3	142503004	142503204	-	1	NA	NA	NA	6170	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.005000	0.447761	
mm_4205.1	chr1	171232044	171232244	+	1	NA	NA	NA	2205	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.015000	0.472637	
mm_77059.1	chr8	109682101	109682301	-	1	NA	NA	NA	11093	NM_028018	71955	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0.020000	0.412935	-36(TTGTTTTAAAGG,-,0.00)
mm_92181.1	chr10	67912506	67912706	-	1	NA	NA	NA	56	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0.085000	0.736318	
mm_145178.1	chr18	47112043	47112243	+	1	NA	NA	NA	153267	NM_178377	69456	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2	COMM domain containing 10	protein-coding	0.030000	0.462687	
mm_1487.1	chr1	71714040	71714240	+	1	NA	NA	NA	60805	NR_040308	100042814	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	ENSMUSG00000073652|Gm15456|OTTMUSG00000022136	apolipoprotein L 7d	ncRNA	0.025000	0.452736	
mm_171860.1	chr5	21721278	21721478	+	1	NA	NA	NA	-15782	NM_028431	73078	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	0.030000	0.577114	-32(GCTTTAAGACCC,+,0.00)
mm_24356.1	chr3	90052829	90053029	+	1	NA	NA	NA	127	NM_027500	99650	Mm.300083	NM_025762	ENSMUSG00000027942	4933434E20Rik	5730552F22Rik|AI462154|NICE-3|NS5ATP4	RIKEN cDNA 4933434E20 gene	protein-coding	0.065000	0.522388	
mm_65451.1	chr7	25412751	25412951	-	1	NA	NA	NA	35	NM_153576	232983	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0.005000	0.462687	44(GCCTTTAAGAAC,-,0.00),45(CCTTTAAGAACC,+,0.00)
mm_74920.1	chr8	25556073	25556273	-	1	NA	NA	NA	-90	NR_110510	102633315	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	OTTMUSG00000031030	predicted gene 16159	ncRNA	0.025000	0.507463	
mm_25332.1	chr3	106573689	106573889	+	1	NA	NA	NA	-25987	NM_133869	99712	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.000000	0.328358	
mm_126412.1	chr15	80257009	80257209	+	1	NA	NA	NA	1925	NM_009716	11911	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	0.010000	0.562189	
mm_119414.1	chr14	45155731	45155931	+	1	NA	NA	NA	63594	NM_172597	70561	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.005000	0.477612	
mm_67516.1	chr7	80825912	80826112	-	1	NA	NA	NA	-22681	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.020000	0.522388	
mm_73875.1	chr8	119277280	119277480	+	1	NA	NA	NA	-67158	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.005000	0.532338	
mm_14007.1	chr2	122028533	122028733	+	1	NA	NA	NA	50	NM_001256055	100042807	Mm.329403	NM_001256055	ENSMUSG00000043424	Eif3j2	ENSMUSG00000043424|Eif3j-2|Gm9781|eIF3 p35|eIF3j-B	eukaryotic translation initiation factor 3, subunit J2	protein-coding	0.110000	0.716418	
mm_88354.1	chr10	75933267	75933467	+	1	NA	NA	NA	-865	NM_008606	17385	Mm.4561	NM_008606	ENSMUSG00000000901	Mmp11	MMP-11|SL-3|ST3|Stmy3	matrix metallopeptidase 11	protein-coding	0.010000	0.537313	
mm_106003.1	chr11	115699388	115699588	-	1	NA	NA	NA	46	NM_001313937	14784	Mm.439649	NM_008163	ENSMUSG00000059923	Grb2	AA408164|Ash	growth factor receptor bound protein 2	protein-coding	0.030000	0.606965	
mm_24455.1	chr3	90613428	90613628	+	1	NA	NA	NA	634	NM_011313	20200	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0.010000	0.562189	
mm_50750.1	chr6	52912566	52912766	+	1	NA	NA	NA	-3046	NM_001168277	231986	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.005000	0.542289	
mm_8847.1	chr1	162706038	162706238	-	1	NA	NA	NA	34418	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.015000	0.442786	
mm_94240.1	chr11	3293049	3293249	+	1	NA	NA	NA	2692	NM_019574	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.005000	0.582090	
mm_159303.1	chr2	178175355	178175555	+	1	NA	NA	NA	106	NM_001177791	74189	Mm.44413	NM_028806	ENSMUSG00000027525	Phactr3	1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224	phosphatase and actin regulator 3	protein-coding	0.055000	0.572139	
mm_61428.1	chr7	73740205	73740405	+	1	NA	NA	NA	-2	NM_001162532	100038347	Mm.425464	NM_001162532	ENSMUSG00000078670	Fam174b	-	family with sequence similarity 174, member B	protein-coding	0.120000	0.721393	
mm_156183.1	chrX	133851022	133851222	+	1	NA	NA	NA	114	NM_022322	64103	Mm.46221	NM_022322	ENSMUSG00000031250	Tnmd	1110017I01Rik|Bricd4|ChM1L|TeM	tenomodulin	protein-coding	0.030000	0.532338	
mm_35486.1	chr4	40898456	40898656	-	1	NA	NA	NA	-21500	NM_011463	20731	Mm.25246	NM_011463	ENSMUSG00000028415	Spink4	MPGC60	serine peptidase inhibitor, Kazal type 4	protein-coding	0.000000	0.527363	-36(CAGTATAAAAGA,-,0.00)
mm_51834.1	chr6	90301117	90301317	+	1	NA	NA	NA	-53	NM_177738	243535	Mm.233854	NM_177738	ENSMUSG00000049694	BC048671	-	cDNA sequence BC048671	protein-coding	0.005000	0.467662	
mm_11338.1	chr2	30712247	30712447	+	1	NA	NA	NA	-8863	NR_037272	100526499		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.065000	0.661692	
mm_160400.1	chr8	70796935	70797135	-	1	NA	NA	NA	-1100	NR_106099	102466823		NR_106099	ENSMUSG00000099031	Mir7240	Gm27487|mmu-mir-7240	microRNA 7240	ncRNA	0.130000	0.721393	
mm_69524.1	chr7	135651801	135652001	-	1	NA	NA	NA	2	NM_001316681	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.015000	0.597015	
mm_17295.1	chr2	26237277	26237477	-	1	NA	NA	NA	22	NM_153559	227638	Mm.116769	NM_153559	ENSMUSG00000036327	Qsox2	BC030934|Qscn6l1|Soxn	quiescin Q6 sulfhydryl oxidase 2	protein-coding	0.130000	0.706468	
mm_58083.1	chr6	136941772	136941972	-	1	NA	NA	NA	27	NM_001301301	11857	Mm.2241	NM_007486	ENSMUSG00000030220	Arhgdib	D4|Gdid4|Ly-GDI	Rho, GDP dissociation inhibitor (GDI) beta	protein-coding	0.015000	0.487562	
mm_33872.1	chr4	136081896	136082096	+	1	NA	NA	NA	-28625	NM_025919	67025	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	0.075000	0.706468	
mm_5508.1	chr1	37475357	37475557	-	1	NA	NA	NA	13148	NR_024017	77633	Mm.483177	NR_024017	ENSMUSG00000103948	4930594C11Rik	-	G1 to S phase transition pseudogene	pseudo	0.000000	0.467662	
mm_139871.1	chr17	70657363	70657563	+	1	NA	NA	NA	95716	NM_001128181	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.025000	0.552239	
mm_110062.1	chr12	21373387	21373587	-	1	NA	NA	NA	145	NR_102380	11491	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	0.070000	0.611940	
mm_91783.1	chr10	52381867	52382067	-	1	NA	NA	NA	157	NM_053187	94221	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0.140000	0.756219	
mm_11072.1	chr2	27677058	27677258	+	1	NA	NA	NA	-43	NM_011305	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.220000	0.875622	
mm_6134.1	chr1	64690558	64690758	-	1	NA	NA	NA	1	NR_038009	69941	Mm.69044	NR_038009	ENSMUSG00000087213	2810408I11Rik	-	RIKEN cDNA 2810408I11 gene	ncRNA	0.100000	0.651741	
mm_169703.1	chr15	75086802	75087002	+	1	NA	NA	NA	25047	NM_001099217	100041546	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0.010000	0.452736	
mm_144368.1	chr18	20510129	20510329	+	1	NA	NA	NA	-45	NM_030596	13512	Mm.106811	NM_030596	ENSMUSG00000056632	Dsg3	bal	desmoglein 3	protein-coding	0.005000	0.547264	
mm_113823.1	chr13	46966574	46966774	+	1	NA	NA	NA	-36956	NM_010617	16553	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	0.020000	0.507463	
mm_39152.1	chr4	155411216	155411416	-	1	NA	NA	NA	2126	NM_001166029	544678	Mm.472798	NM_177674	ENSMUSG00000078490	Cfap74	2010015L04Rik|A530045M11	cilia and flagella associated protein 74	protein-coding	0.010000	0.402985	
mm_77931.1	chr9	7353921	7354121	+	1	NA	NA	NA	6647	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.422886	
mm_134811.1	chr16	25041138	25041338	-	1	NA	NA	NA	-18401	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.035000	0.497512	
mm_131566.1	chr16	18213856	18214056	+	1	NA	NA	NA	-93	NR_015575	66779	Mm.387525	NR_015575		4933432I09Rik	-	RIKEN cDNA 4933432I09 gene	ncRNA	0.020000	0.597015	
mm_78518.1	chr9	32928617	32928817	+	1	NA	NA	NA	249	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.005000	0.393035	
mm_47394.1	chr5	123018847	123019047	-	1	NA	NA	NA	3873	NM_175423	109305	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.005000	0.532338	
mm_27734.1	chr3	69068373	69068573	-	1	NA	NA	NA	-23731	NM_025863	66949	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.010000	0.393035	60(CCTTTAAAACTG,+,0.00)
mm_110998.1	chr12	78842484	78842684	-	1	NA	NA	NA	19054	NM_023721	73834	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	0.005000	0.422886	
mm_139047.1	chr17	46253848	46254048	+	1	NA	NA	NA	-217	NM_001111142	224813	Mm.70999	NM_001111142	ENSMUSG00000071073	Lrrc73	Gm88	leucine rich repeat containing 73	protein-coding	0.130000	0.746269	
mm_131945.1	chr16	24327435	24327635	+	1	NA	NA	NA	-65815	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.005000	0.358209	
mm_158723.1	chrX	162964133	162964333	-	1	NA	NA	NA	366	NM_009789	12309	Mm.6891	NM_009789	ENSMUSG00000040808	S100g	AU042539|CABP1|CaBP-D9K|Cabp9k|Calb3	S100 calcium binding protein G	protein-coding	0.015000	0.427861	-44(TGGTATAAAAGC,-,0.00)
mm_61482.1	chr7	75678545	75678745	+	1	NA	NA	NA	-169693	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.005000	0.393035	
mm_134584.1	chr16	20423393	20423593	-	1	NA	NA	NA	2901	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.015000	0.472637	
mm_68943.1	chr7	126503489	126503689	-	1	NA	NA	NA	-287	NM_183020	233871	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.110000	0.706468	-53(CAGCATTTAAGG,-,0.00),-51(GCATTTAAGGTG,+,0.00)
mm_48338.1	chr5	139129954	139130154	-	1	NA	NA	NA	-302	NM_008923	19085	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	0.045000	0.587065	
mm_22104.1	chr2	169887932	169888132	-	1	NA	NA	NA	75155	NR_131974	446211	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0.035000	0.557214	
mm_86975.1	chr10	25414489	25414689	+	1	NA	NA	NA	6221	NM_013511	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.005000	0.373134	
mm_149020.1	chr19	8756634	8756834	+	1	NA	NA	NA	235	NR_132423	102640359	Mm.440831	NR_132423		LOC102640359	-	uncharacterized LOC102640359	ncRNA	0.060000	0.532338	
mm_90906.1	chr10	11280261	11280461	-	1	NA	NA	NA	-969	NM_027968	71865	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0.020000	0.393035	-64(GCTTATATGTGG,+,0.00)
mm_168596.1	chr1	173942379	173942579	-	1	NA	NA	NA	13	NM_001302649	15950	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Mndal	interferon activated gene 203	protein-coding	0.005000	0.427861	
mm_171372.1	chr4	119282316	119282516	-	1	NA	NA	NA	12097	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.035000	0.402985	
mm_47403.1	chr5	123130762	123130962	-	1	NA	NA	NA	1767	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.015000	0.552239	
mm_158299.1	chrX	116287193	116287393	-	1	NA	NA	NA	-161651	NM_001033471	382239	Mm.336224	NM_001033471	ENSMUSG00000072995	Cpxcr1	Gm1143	CPX chromosome region, candidate 1	protein-coding	0.065000	0.502488	
mm_24233.1	chr3	88950582	88950782	+	1	NA	NA	NA	-400	NM_001164533	65111	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0.145000	0.786070	
mm_20021.1	chr2	119346654	119346854	-	1	NA	NA	NA	-4488	NM_026929	69065	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	0.015000	0.402985	
mm_36218.1	chr4	62516586	62516786	-	1	NA	NA	NA	3223	NM_001276446	17025	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0.000000	0.567164	
mm_135348.1	chr16	43664037	43664237	-	1	NA	NA	NA	47	NM_001146325	100043314	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	ENSMUSG00000071552|Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0.010000	0.522388	
mm_131314.1	chr16	11644629	11644829	+	1	NA	NA	NA	-134973	NR_126430	73761	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.000000	0.447761	
mm_79562.1	chr9	58128965	58129165	+	1	NA	NA	NA	-23	NM_001162475	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.020000	0.557214	
mm_134276.1	chr16	14109969	14110169	-	1	NA	NA	NA	49205	NM_001081154	223989	Mm.85442	NM_001081154	ENSMUSG00000060657	Marf1	4921513D23Rik|BC031575|C87306|E030019O05|Lkap|mKIAA0430	meiosis arrest female 1	protein-coding	0.005000	0.298507	
mm_63099.1	chr7	122438551	122438751	+	1	NA	NA	NA	149526	NM_008855	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.015000	0.507463	
mm_98913.1	chr11	98203228	98203428	+	1	NA	NA	NA	23	NM_001109626	69131	Mm.260516	NM_026952	ENSMUSG00000003119	Cdk12	1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|Pksc	cyclin-dependent kinase 12	protein-coding	0.060000	0.671642	
mm_67061.1	chr7	67619887	67620087	-	1	NA	NA	NA	25249	NM_175124	67867	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	0.010000	0.417910	-39(GTCTTTTTAAAG,-,0.00),-37(CTTTTTAAAGAA,+,0.00)
mm_10372.1	chr2	11724908	11725108	+	1	NA	NA	NA	19296	NM_001271500	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.005000	0.442786	-43(AGCTTTAAAAGG,-,0.00),-42(GCTTTAAAAGGA,+,0.00)
mm_108582.1	chr12	85110782	85110982	+	1	NA	NA	NA	49	NM_030225	78920	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0.120000	0.711443	
mm_6993.1	chr1	86358379	86358579	-	1	NA	NA	NA	976	NM_010880	17975	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	0.010000	0.393035	-98(TGCTTTAAGAGG,-,0.00),-97(GCTTTAAGAGGT,+,0.00)
mm_124830.1	chr15	9155426	9155626	+	1	NA	NA	NA	-101	NM_001285980	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.000000	0.402985	-80(CCTTTTAAACAG,+,0.00)
mm_3168.1	chr1	135673628	135673828	+	1	NA	NA	NA	-55469	NM_007791	13007	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.040000	0.537313	-28(CTATTTATAGTG,+,0.00)
mm_17667.1	chr2	32085225	32085425	-	1	NA	NA	NA	-1620	NM_175511	241303	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.000000	0.482587	
mm_135669.1	chr16	52411478	52411678	-	1	NA	NA	NA	41503	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.253731	
mm_157557.1	chrX	52053013	52053213	-	1	NA	NA	NA	-80341	NM_028851	74279	Mm.159154	NM_028851	ENSMUSG00000031118	1700080O16Rik	-	RIKEN cDNA 1700080O16 gene	protein-coding	0.005000	0.343284	
mm_145548.1	chr18	60808872	60809072	+	1	NA	NA	NA	-3104	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.020000	0.547264	
mm_146271.1	chr18	77879436	77879636	+	1	NA	NA	NA	-58931	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.005000	0.497512	
mm_38177.1	chr4	135266681	135266881	-	1	NA	NA	NA	5979	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.005000	0.348259	
mm_60544.1	chr7	44480495	44480695	+	1	NA	NA	NA	-3922	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.462687	
mm_92016.1	chr10	62342630	62342830	-	1	NA	NA	NA	2123	NR_038038	70162	Mm.441212	NR_038038		Hk1os	2210417K05Rik	hexokinase 1, opposite strand	ncRNA	0.015000	0.587065	-13(GCTTATCTGGCC,+,0.00)
mm_99576.1	chr11	104132770	104132970	+	1	NA	NA	NA	89	NM_001313929	12921	Mm.1892	NM_007762	ENSMUSG00000018634	Crhr1	CRF1R|CRFR1|Crhr	corticotropin releasing hormone receptor 1	protein-coding	0.090000	0.741294	
mm_110753.1	chr12	70044316	70044516	-	1	NA	NA	NA	-57414	NM_022028	64010	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0.020000	0.482587	-76(GCCTATTAAAGG,-,0.00)
mm_38817.1	chr4	148599012	148599212	-	1	NA	NA	NA	-3432	NM_010767	17175	Mm.378962	NM_010767	ENSMUSG00000028979	Masp2	MASP-2|MAp19	mannan-binding lectin serine peptidase 2	protein-coding	0.040000	0.472637	-32(TTCTATAAAAAC,-,0.00)
mm_63140.1	chr7	123124172	123124372	+	1	NA	NA	NA	387	NM_144925	233833	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0.140000	0.741294	
mm_165984.1	chr4	107178293	107178493	+	1	NA	NA	NA	-27	NM_025617	66526	Mm.246956	NM_025617	ENSMUSG00000028619	Tceanc2	2210010B22Rik|2210012G02Rik|6330404A07Rik|AU015593|Tdeanc2	transcription elongation factor A (SII) N-terminal and central domain containing 2	protein-coding	0.090000	0.641791	
mm_37507.1	chr4	123841891	123842091	-	1	NA	NA	NA	54116	NM_183163	230726	Mm.37334	NM_183163	ENSMUSG00000043333	Rhbdl2	9130416B15|RRP2	rhomboid, veinlet-like 2 (Drosophila)	protein-coding	0.060000	0.631841	
mm_159212.1	chr2	122439682	122439882	+	1	NA	NA	NA	13305	NM_172980	269346	Mm.29510	NM_172980	ENSMUSG00000027219	Slc28a2	2010208B10Rik|B430217P18|BB152493|Cnt2	solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	protein-coding	0.000000	0.437811	
mm_69119.1	chr7	127026137	127026337	-	1	NA	NA	NA	242	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.100000	0.736318	
mm_100555.1	chr11	120722155	120722355	+	1	NA	NA	NA	787	NM_133223	170758	Mm.34008	NM_133223	ENSMUSG00000018012	Rac3	Rac1B	RAS-related C3 botulinum substrate 3	protein-coding	0.050000	0.621891	
mm_159844.1	chr5	135435042	135435242	-	1	NA	NA	NA	-40596	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.035000	0.616915	
mm_63032.1	chr7	121074557	121074757	+	1	NA	NA	NA	-127	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.010000	0.398010	-20(CCATTTAGAGTT,+,0.00)
mm_9208.1	chr1	171229743	171229943	-	1	NA	NA	NA	4506	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.015000	0.502488	
mm_19291.1	chr2	90457081	90457281	-	1	NA	NA	NA	21993	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.000000	0.378109	
mm_85038.1	chr9	88719224	88719424	-	1	NA	NA	NA	474	NM_001128601	100039707	Mm.347377	NM_001128601	ENSMUSG00000079427	Mthfsl	Gm2382	5, 10-methenyltetrahydrofolate synthetase-like	protein-coding	0.020000	0.378109	
mm_118128.1	chr13	104610531	104610731	-	1	NA	NA	NA	206322	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.030000	0.507463	
mm_105854.1	chr11	113750791	113750991	-	1	NA	NA	NA	269	NM_020006	56699	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.090000	0.626866	
mm_77216.1	chr8	114978823	114979023	-	1	NA	NA	NA	539271	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.015000	0.507463	
mm_154150.1	chr19	58454439	58454639	-	1	NA	NA	NA	859	NM_001285457	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.080000	0.641791	-39(ACCCCTAAAAGC,-,0.00)
mm_109380.1	chr12	109709025	109709225	+	1	NA	NA	NA	65	NR_029880	723858		NR_029880	ENSMUSG00000065498	Mir379	Mirn379|mir-379|mmu-mir-379	microRNA 379	ncRNA	0.040000	0.492537	
mm_49010.1	chr6	4758336	4758536	+	1	NA	NA	NA	11130	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.005000	0.402985	
mm_11667.1	chr2	35282225	35282425	+	1	NA	NA	NA	-55	NM_146120	227753	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.070000	0.656716	
mm_59548.1	chr7	28070914	28071114	+	1	NA	NA	NA	-222	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.020000	0.577114	-50(GTCTCTATAAGG,-,0.00)
mm_111797.1	chr12	104926738	104926938	-	1	NA	NA	NA	-61762	NR_104435	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.005000	0.432836	
mm_81325.1	chr9	108490754	108490954	+	1	NA	NA	NA	178	NM_027804	71472	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	0.140000	0.731343	
mm_163075.1	chr11	68117905	68118105	+	1	NA	NA	NA	-102887	NR_105833	102465219		NR_105833	ENSMUSG00000099174	Mir6406	Gm27981|mmu-mir-6406	microRNA 6406	ncRNA	0.025000	0.547264	
mm_20784.1	chr2	143989239	143989439	-	1	NA	NA	NA	21924	NM_133626	81910	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.000000	0.626866	
mm_51226.1	chr6	71373333	71373533	+	1	NA	NA	NA	6	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.020000	0.582090	-88(GCCCCTAAAAGG,-,0.00)
mm_17572.1	chr2	30359210	30359410	-	1	NA	NA	NA	6	NM_139302	227700	Mm.33343	NM_139302	ENSMUSG00000026860	Sh3glb2	SPAS-1	SH3-domain GRB2-like endophilin B2	protein-coding	0.170000	0.850746	
mm_85336.1	chr9	102626021	102626221	-	1	NA	NA	NA	3	NM_001301689	28135	Mm.38910	NM_001081122	ENSMUSG00000032534	Cep63	4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2	centrosomal protein 63	protein-coding	0.135000	0.741294	
mm_78292.1	chr9	22388779	22388979	+	1	NA	NA	NA	327	NM_028390	68743	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0.120000	0.721393	
mm_88427.1	chr10	77259259	77259459	+	1	NA	NA	NA	59	NM_030262	80294	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.125000	0.731343	
mm_14433.1	chr2	130589341	130589541	+	1	NA	NA	NA	-6853	NM_009732	11998	Mm.6190	NM_009732	ENSMUSG00000037727	Avp	Vp|Vsp	arginine vasopressin	protein-coding	0.010000	0.522388	
mm_77813.1	chr9	3199794	3199994	+	1	NA	NA	NA	-81	NR_027988	114673	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0.065000	0.626866	
mm_56064.1	chr6	86780923	86781123	-	1	NA	NA	NA	-5909	NM_001331120	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.000000	0.437811	
mm_60761.1	chr7	45526433	45526633	+	1	NA	NA	NA	203	NM_148927	69217	Mm.274158	NM_148927	ENSMUSG00000040428	Plekha4	2410005C22Rik|C88169|Pepp1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 4	protein-coding	0.035000	0.442786	
mm_129602.1	chr15	79892232	79892432	-	1	NA	NA	NA	-76	NM_001160415	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.045000	0.597015	
mm_101111.1	chr11	11944814	11945014	-	1	NA	NA	NA	-46770	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.015000	0.467662	
mm_123516.1	chr14	66279520	66279720	-	1	NA	NA	NA	1432	NM_172498	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.010000	0.522388	
mm_88581.1	chr10	79693766	79693966	+	1	NA	NA	NA	40	NM_001302499	16904	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	0.020000	0.477612	
mm_135242.1	chr16	36990425	36990625	-	1	NA	NA	NA	-11389	NM_001037321	207215	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0.005000	0.562189	
mm_115014.1	chr13	98354706	98354906	+	1	NA	NA	NA	561	NM_008242	15229	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	0.160000	0.781095	
mm_94631.1	chr11	16842316	16842516	+	1	NA	NA	NA	90213	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.005000	0.492537	
mm_10838.1	chr2	24934765	24934965	+	1	NA	NA	NA	416	NR_027876	215705	Mm.45275	NM_178408	ENSMUSG00000026972	Arrdc1	AI957342|BC004091	arrestin domain containing 1	protein-coding	0.070000	0.656716	
mm_125762.1	chr15	74044061	74044261	+	1	NA	NA	NA	-204490	NM_001033365	268816	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding	0.005000	0.542289	
mm_63744.1	chr7	130936163	130936363	+	1	NA	NA	NA	60	NM_019564	56213	Mm.30156	NM_019564	ENSMUSG00000006205	Htra1	AI429470|HTRA|L56|Prss11|RSPP11	HtrA serine peptidase 1	protein-coding	0.125000	0.676617	
mm_118504.1	chr14	13932490	13932690	+	1	NA	NA	NA	28723	NM_001285780	66231	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.025000	0.442786	-33(TTCTTTAAAAAC,-,0.00)
mm_152166.1	chr19	7297500	7297700	-	1	NA	NA	NA	-2153	NM_001080390	13728	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.005000	0.432836	
mm_167500.1	chr9	13296746	13296946	+	1	NA	NA	NA	49890	NM_025534	66396	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.055000	0.537313	
mm_37055.1	chr4	116018065	116018265	-	1	NA	NA	NA	-263	NM_010173	14073	Mm.256025	NM_010173	ENSMUSG00000034171	Faah	AW412498	fatty acid amide hydrolase	protein-coding	0.010000	0.502488	
mm_50338.1	chr6	48523351	48523551	+	1	NA	NA	NA	14023	NR_130985	69432		NR_130985	ENSMUSG00000097716	1700026J14Rik	-	RIKEN cDNA 1700026J14 gene	ncRNA	0.020000	0.467662	
mm_118349.1	chr13	114931951	114932151	-	1	NA	NA	NA	-10	NM_008396	16398	Mm.5007	NM_008396	ENSMUSG00000015533	Itga2	CD49B|DX5	integrin alpha 2	protein-coding	0.025000	0.577114	
mm_154973.1	chrX	37179503	37179703	+	1	NA	NA	NA	-10761	NM_001033785	434756	Mm.471848	NM_001033785	ENSMUSG00000036551	Akap14	-	A kinase (PRKA) anchor protein 14	protein-coding	0.020000	0.482587	
mm_121172.1	chr14	103025094	103025294	+	1	NA	NA	NA	8609	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.000000	0.258706	
mm_114423.1	chr13	64432283	64432483	+	1	NA	NA	NA	-170	NM_053180	105278	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	0.055000	0.587065	
mm_71642.1	chr8	57512770	57512970	+	1	NA	NA	NA	1027	NM_008252	97165	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.095000	0.676617	32(GGGTTTTAAAGG,-,0.00)
mm_15520.1	chr2	158328264	158328464	+	1	NA	NA	NA	21871	NM_008489	16803	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	0.015000	0.562189	
mm_36346.1	chr4	73771045	73771245	-	1	NA	NA	NA	19457	NM_001017427	242505	Mm.389582	NM_001017427	ENSMUSG00000043003	Rasef	BC030882|RAB45	RAS and EF hand domain containing	protein-coding	0.010000	0.437811	
mm_73286.1	chr8	104926121	104926321	+	1	NA	NA	NA	-39	NM_001163756	234673	Mm.441134	NM_172759	ENSMUSG00000031886	Ces2e	9030624L02Rik|Ces5	carboxylesterase 2E	protein-coding	0.010000	0.462687	
mm_17490.1	chr2	28583157	28583357	-	1	NA	NA	NA	22	NM_148928	70239	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0.060000	0.562189	
mm_158483.1	chrX	142196899	142197099	-	1	NA	NA	NA	-63	NM_001007576	245650	Mm.208511	NM_001007576	ENSMUSG00000042282	Gucy2f	A930002I06|GC-F|GC2	guanylate cyclase 2f	protein-coding	0.005000	0.402985	
mm_7818.1	chr1	132007073	132007273	-	1	NA	NA	NA	-432	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.005000	0.368159	
mm_138760.1	chr17	37050766	37050966	+	1	NA	NA	NA	4900	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.060000	0.736318	
mm_67214.1	chr7	74428065	74428265	-	1	NA	NA	NA	126615	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.005000	0.378109	
mm_76642.1	chr8	92855177	92855377	-	1	NA	NA	NA	-73	NM_173014	270084	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	A330042H22|Aytl1|Aytl1a|lpafat1	lysophosphatidylcholine acyltransferase 2	protein-coding	0.055000	0.611940	
mm_94787.1	chr11	22287310	22287510	+	1	NA	NA	NA	-615	NM_001252515	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0.025000	0.552239	
mm_45465.1	chr5	67847320	67847520	-	1	NA	NA	NA	11	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.130000	0.786070	
mm_70005.1	chr7	142387827	142388027	-	1	NA	NA	NA	-57	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.120000	0.691542	64(CTGCCTATAAGC,-,0.00)
mm_4047.1	chr1	165780663	165780863	+	1	NA	NA	NA	-7918	NM_031162	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.050000	0.577114	46(GTCCCTTTAAGG,-,0.00),48(CCCTTTAAGGAA,+,0.00)
mm_574.1	chr1	38987695	38987895	+	1	NA	NA	NA	-19	NM_026850	68833	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	0.080000	0.666667	
mm_47245.1	chr5	121567707	121567907	-	1	NA	NA	NA	-21915	NM_010765	17165	Mm.272206	NM_010765	ENSMUSG00000029454	Mapkapk5	MK5|PRAK	MAP kinase-activated protein kinase 5	protein-coding	0.020000	0.492537	
mm_97658.1	chr11	79540550	79540750	+	1	NA	NA	NA	-10041	NM_010161	14017	Mm.439665	NM_010161	ENSMUSG00000078771	Evi2a	AW491894|Evi-2|Evi2	ecotropic viral integration site 2a	protein-coding	0.000000	0.358209	
mm_170266.1	chr18	18947042	18947242	-	1	NA	NA	NA	1054955	NM_007882	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding	0.015000	0.502488	-34(CCCCATATAAGC,-,0.00),-32(CCATATAAGCAC,+,0.00)
mm_16581.1	chr2	3517693	3517893	-	1	NA	NA	NA	4728	NM_177647	227526	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	0.010000	0.388060	36(CTTTTTATAATG,+,0.00)
mm_26595.1	chr3	151439152	151439352	+	1	NA	NA	NA	1370	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.015000	0.487562	
mm_142905.1	chr17	52312073	52312273	-	1	NA	NA	NA	-290536	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.000000	0.402985	
mm_32238.1	chr4	102255071	102255271	+	1	NA	NA	NA	232	NM_019840	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.025000	0.467662	
mm_46105.1	chr5	92347757	92347957	-	1	NA	NA	NA	1032	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.025000	0.432836	
mm_21453.1	chr2	160769856	160770056	-	1	NA	NA	NA	38646	NM_021280	18803	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.005000	0.368159	
mm_132978.1	chr16	52074237	52074437	+	1	NA	NA	NA	42788	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.000000	0.462687	
mm_66221.1	chr7	34655408	34655608	-	1	NA	NA	NA	-2667	NM_146188	233107	Mm.486198	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	0.115000	0.711443	
mm_2384.1	chr1	93478993	93479193	+	1	NA	NA	NA	32	NM_001159719	18000	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	0.110000	0.646766	
mm_33068.1	chr4	123283704	123283904	+	1	NA	NA	NA	519	NM_148917	230721	Mm.277091	NM_130881	ENSMUSG00000011257	Pabpc4	-	poly(A) binding protein, cytoplasmic 4	protein-coding	0.060000	0.597015	
mm_15567.1	chr2	158610973	158611173	+	1	NA	NA	NA	315	NM_009508	22348	Mm.143404	NM_009508	ENSMUSG00000037771	Slc32a1	R75019|VGAT|Viaat	solute carrier family 32 (GABA vesicular transporter), member 1	protein-coding	0.120000	0.721393	
mm_77101.1	chr8	111027672	111027872	-	1	NA	NA	NA	-2	NM_001190800	234733	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	0.100000	0.661692	
mm_143385.1	chr17	67992991	67993191	-	1	NA	NA	NA	11017	NM_172964	268970	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0.000000	0.243781	
mm_157079.1	chrX	9435529	9435729	-	1	NA	NA	NA	33695	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.318408	
mm_157016.1	chrX	7681122	7681322	-	1	NA	NA	NA	29	NR_037581	54634	Mm.67912	NM_018832	ENSMUSG00000031147	Magix	Pdzx|Sfc18	MAGI family member, X-linked	protein-coding	0.030000	0.522388	
mm_140492.1	chr17	3314099	3314299	-	1	NA	NA	NA	-12374	NM_001122998	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.065000	0.582090	
mm_130708.1	chr15	100720140	100720340	-	1	NA	NA	NA	237	NM_001161768	207839	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	0.030000	0.502488	
mm_170219.1	chr17	77828958	77829158	+	1	NA	NA	NA	-371190	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.040000	0.542289	-61(CTTTTTTAAAGG,-,0.00),-60(TTTTTTAAAGGA,+,0.00)
mm_69170.1	chr7	127214994	127215194	-	1	NA	NA	NA	3351	NM_017461	54204	Mm.18	NM_017461	ENSMUSG00000000486	Sept1	Diff6|Pnutl3	septin 1	protein-coding	0.030000	0.532338	
mm_101766.1	chr11	43835892	43836092	-	1	NA	NA	NA	497	NM_007416	11548	Mm.39086	NM_007416	ENSMUSG00000050541	Adra1b	[a]1b	adrenergic receptor, alpha 1b	protein-coding	0.030000	0.582090	
mm_82902.1	chr9	32747506	32747706	-	1	NA	NA	NA	51564	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.005000	0.477612	
mm_37804.1	chr4	130812362	130812562	-	1	NA	NA	NA	19925	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.015000	0.582090	
mm_48307.1	chr5	138619574	138619774	-	1	NA	NA	NA	69	NM_001163797	24135	Mm.27575	NM_013844	ENSMUSG00000058291	Zfp68	KRAB3|KRAZ2|Zfp70|mszf22|mszf49	zinc finger protein 68	protein-coding	0.070000	0.656716	
mm_139149.1	chr17	47538342	47538542	+	1	NA	NA	NA	33391	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.010000	0.427861	68(GCATATATACTC,+,0.00)
mm_163310.1	chr12	4769004	4769204	+	1	NA	NA	NA	163	NM_175431	207921	Mm.184898	NM_175431	ENSMUSG00000050545	Fam228b	A830093I24Rik	family with sequence similarity 228, member B	protein-coding	0.135000	0.726368	
mm_111763.1	chr12	104002630	104002830	-	1	NA	NA	NA	10922	NM_027997	71907	Mm.326723	NM_027997	ENSMUSG00000058260	Serpina9	2310014L03Rik|AW049635|Centerin	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9	protein-coding	0.010000	0.422886	-34(GCTTTTATAAGT,+,0.00)
mm_135337.1	chr16	42292046	42292246	-	1	NA	NA	NA	11323	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0.020000	0.597015	
mm_129916.1	chr15	84185054	84185254	-	1	NA	NA	NA	-7079	NM_178614	68653	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0.020000	0.522388	-50(ATCTCTTAAAGC,-,0.00),-33(GGCCATATAAGG,-,0.00)
mm_2590.1	chr1	119290006	119290206	+	1	NA	NA	NA	132142	NM_008381	16324	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	0.025000	0.572139	
mm_73653.1	chr8	110940881	110941081	+	1	NA	NA	NA	21116	NM_009179	20444	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	0.030000	0.522388	
mm_5229.1	chr1	14309895	14310095	-	1	NA	NA	NA	204	NM_001310459	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.095000	0.621891	
mm_76328.1	chr8	84705955	84706155	-	1	NA	NA	NA	4598	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.025000	0.283582	
mm_60205.1	chr7	43436874	43437074	+	1	NA	NA	NA	-164	NM_024253	72310	Mm.34613	NM_024253	ENSMUSG00000004612	Nkg7	2500004F03Rik	natural killer cell group 7 sequence	protein-coding	0.005000	0.567164	
mm_34421.1	chr4	145274123	145274323	+	1	NA	NA	NA	-27353	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.015000	0.547264	
mm_28957.1	chr3	100489242	100489442	-	1	NA	NA	NA	-150	NM_001142952	74645	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.155000	0.805970	
mm_12118.1	chr2	61604360	61604560	+	1	NA	NA	NA	11363	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.010000	0.398010	
mm_152161.1	chr19	7275774	7275974	-	1	NA	NA	NA	7595	NM_001320554	104383	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.005000	0.398010	
mm_123709.1	chr14	69805471	69805671	-	1	NA	NA	NA	-26	NM_153514	246710	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0.050000	0.487562	88(GCGTCTTAAGGC,-,0.00)
mm_18334.1	chr2	57297540	57297740	-	1	NA	NA	NA	59258	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.000000	0.363184	
mm_153897.1	chr19	47050250	47050450	-	1	NA	NA	NA	556	NM_027654	71041	Mm.35413	NM_027654	ENSMUSG00000025050	Pcgf6	4933407A11Rik|AI604840|MBLR|Rnf134	polycomb group ring finger 6	protein-coding	0.085000	0.641791	
mm_11685.1	chr2	35621902	35622102	+	1	NA	NA	NA	21	NM_001114124	69601	Mm.29629	NM_001001602	ENSMUSG00000026883	Dab2ip	2310011D08Rik|AI480459|Aip1|mKIAA1743	disabled 2 interacting protein	protein-coding	0.100000	0.761194	
mm_16056.1	chr2	167777394	167777594	+	1	NA	NA	NA	86317	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.065000	0.691542	
mm_154927.1	chrX	24008612	24008812	+	1	NA	NA	NA	115949	NM_001034864	236749	Mm.296422	NM_001034864	ENSMUSG00000068113	Gm4907	EG236749	predicted gene 4907	protein-coding	0.045000	0.502488	
mm_107074.1	chr12	16942760	16942960	+	1	NA	NA	NA	47882	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0.005000	0.393035	
mm_63884.1	chr7	137437476	137437676	+	1	NA	NA	NA	-72	NM_023140	30926	Mm.267692	NM_023140	ENSMUSG00000031068	Glrx3	PICOT|Txnl2	glutaredoxin 3	protein-coding	0.095000	0.691542	
mm_143855.1	chr17	84183477	84183677	-	1	NA	NA	NA	4370	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.040000	0.626866	
mm_167900.1	chrX	73862935	73863135	-	1	NA	NA	NA	17799	NM_008478	16728	Mm.260568	NM_008478	ENSMUSG00000031391	L1cam	CD171|L1|N-CAM-L1|NCAM-L1	L1 cell adhesion molecule	protein-coding	0.005000	0.547264	
mm_76485.1	chr8	85700793	85700993	-	1	NA	NA	NA	-12	NR_106189	102465898		NR_106189	ENSMUSG00000098388	Mir8109	Gm27495|mmu-mir-8109	microRNA 8109	ncRNA	0.180000	0.805970	
mm_125597.1	chr15	59648600	59648800	+	1	NA	NA	NA	46	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.090000	0.611940	
mm_146403.1	chr18	82972682	82972882	+	1	NA	NA	NA	-52222	NR_033307	75853	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.030000	0.517413	
mm_62693.1	chr7	110121984	110122184	+	1	NA	NA	NA	25	NM_009516	22390	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.135000	0.681592	
mm_52875.1	chr6	122345879	122346079	+	1	NA	NA	NA	-5752	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.020000	0.507463	
mm_79985.1	chr9	66974896	66975096	+	1	NA	NA	NA	488	NM_030717	80907	Mm.157882	NM_030717	ENSMUSG00000032370	Lactb	LACT-1|Lact1|Mrpl56	lactamase, beta	protein-coding	0.080000	0.666667	-92(GACTCTAAAGGG,-,0.00)
mm_94543.1	chr11	9191841	9192041	+	1	NA	NA	NA	-1	NM_178259	268379	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.025000	0.552239	-35(TGGTATATAAGC,-,0.00)
mm_163572.1	chr13	30760885	30761085	+	1	NA	NA	NA	11752	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.005000	0.447761	
mm_12218.1	chr2	67628634	67628834	+	1	NA	NA	NA	-46723	NR_106083	102465706		NR_106083	ENSMUSG00000098299	Mir7224	Gm27971|mmu-mir-7224	microRNA 7224	ncRNA	0.010000	0.442786	
mm_136657.1	chr17	5996751	5996951	+	1	NA	NA	NA	-10729	NM_001290698	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.055000	0.572139	
mm_135067.1	chr16	34204732	34204932	-	1	NA	NA	NA	-237829	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.020000	0.437811	
mm_101370.1	chr11	23770642	23770842	-	1	NA	NA	NA	228	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.085000	0.686567	
mm_35834.1	chr4	48042429	48042629	-	1	NA	NA	NA	-2776	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.000000	0.348259	
mm_62732.1	chr7	110808712	110808912	+	1	NA	NA	NA	35569	NM_025999	67150	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	0.005000	0.422886	
mm_88082.1	chr10	68043746	68043946	+	1	NA	NA	NA	64248	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.015000	0.427861	
mm_140956.1	chr17	24614421	24614621	-	1	NA	NA	NA	18106	NM_011647	22084	Mm.30435	NM_011647	ENSMUSG00000002496	Tsc2	Nafld|Tcs2	tuberous sclerosis 2	protein-coding	0.010000	0.572139	
mm_17610.1	chr2	30921813	30922013	-	1	NA	NA	NA	-18616	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.010000	0.532338	
mm_33234.1	chr4	127021197	127021397	+	1	NA	NA	NA	-4	NR_045010	71514	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|OTTMUSG00000009329|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.060000	0.527363	-9(TCCTATTTAAGA,-,0.00)
mm_88697.1	chr10	80142281	80142481	+	1	NA	NA	NA	66	NM_025313	66043	Mm.278560	NM_025313	ENSMUSG00000003072	Atp5d	0610008F14Rik|1500000I11Rik|AA960090|AI876556|AU020773|C85518	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	protein-coding	0.105000	0.646766	
mm_101979.1	chr11	50407915	50408115	-	1	NA	NA	NA	23096	NM_172557	216724	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	0.025000	0.447761	
mm_53052.1	chr6	124808581	124808781	+	1	NA	NA	NA	20	NM_001306050	14794	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.035000	0.542289	
mm_1757.1	chr1	75521679	75521879	+	1	NA	NA	NA	250	NM_027886	71728	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	0.075000	0.601990	
mm_92727.1	chr10	80826903	80827103	-	1	NA	NA	NA	307	NR_027656	100041965	Mm.328806	NR_027656		Oaz1-ps	ENSMUSG00000043801|Gm1823|Gm9786|Oaz-ps	ornithine decarboxylase antizyme 1, pseudogene	pseudo	0.130000	0.756219	
mm_26021.1	chr3	135438433	135438633	+	1	NA	NA	NA	132	NR_030689	319587	Mm.358971	NR_030689	ENSMUSG00000097032	4930539J05Rik	8030475D13Rik	RIKEN cDNA 4930539J05 gene	ncRNA	0.105000	0.656716	
mm_173007.1	chrM	131	331	+	1	NA	NA	NA	NA	NA									0.035000	0.407960	
mm_145621.1	chr18	61108767	61108967	+	1	NA	NA	NA	3295	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.015000	0.527363	-6(TTCCTTAAAAGA,-,0.00)
mm_66302.1	chr7	38227888	38228088	-	1	NA	NA	NA	6	NM_024413	72287	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	0.095000	0.696517	
mm_164949.1	chr19	4601573	4601773	+	1	NA	NA	NA	7354	NM_008797	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.030000	0.567164	
mm_76919.1	chr8	105933144	105933344	-	1	NA	NA	NA	618	NM_023182	109660	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.010000	0.552239	
mm_49205.1	chr6	15720601	15720801	+	1	NA	NA	NA	40	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.060000	0.601990	
mm_70198.1	chr7	144553607	144553807	-	1	NA	NA	NA	22	NM_001033319	233977	Mm.490347	NM_001033319	ENSMUSG00000037519	Ppfia1	C030014K08Rik|C87158|LIP.1|LIP1	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1	protein-coding	0.205000	0.805970	
mm_165089.1	chr19	49144636	49144836	-	1	NA	NA	NA	938711	NM_025696	66673	Mm.70980	NM_025696	ENSMUSG00000063434	Sorcs3	6330404A12Rik|AW045579	sortilin-related VPS10 domain containing receptor 3	protein-coding	0.000000	0.378109	
mm_104528.1	chr11	96124368	96124568	-	1	NA	NA	NA	-9318	NM_172799	237930	Mm.249912	NM_172799	ENSMUSG00000038756	Ttll6	4932418K24Rik|D11Moh43e|D11Moh44e|t8130b59	tubulin tyrosine ligase-like family, member 6	protein-coding	0.095000	0.686567	
mm_164205.1	chr15	81969242	81969442	-	1	NA	NA	NA	-8412	NM_001282041	29858	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	0.015000	0.542289	
mm_135104.1	chr16	35490782	35490982	-	1	NA	NA	NA	-9	NM_028295	72599	Mm.71015	NM_028295	ENSMUSG00000022844	Pdia5	2700053F16Rik|AU015525|Pdir	protein disulfide isomerase associated 5	protein-coding	0.090000	0.676617	
mm_9914.1	chr1	189007763	189007963	-	1	NA	NA	NA	-23	NM_172650	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.100000	0.701493	
mm_72038.1	chr8	70808353	70808553	+	1	NA	NA	NA	4	NM_008353	16161	Mm.731	NM_008353	ENSMUSG00000000791	Il12rb1	CD212|IL-12R[b]	interleukin 12 receptor, beta 1	protein-coding	0.020000	0.547264	
mm_54585.1	chr6	38127979	38128179	-	1	NA	NA	NA	-3493	NM_080467	140494	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	0.000000	0.427861	
mm_108782.1	chr12	90168938	90169138	+	1	NA	NA	NA	356555	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.010000	0.467662	
mm_140624.1	chr17	12318578	12318778	-	1	NA	NA	NA	-18	NM_011948	26407	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.120000	0.716418	
mm_148276.1	chr18	81927571	81927771	-	1	NA	NA	NA	64409	NR_039589	100628596		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.045000	0.542289	
mm_55359.1	chr6	56923710	56923910	-	1	NA	NA	NA	122	NM_026004	107569	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0.150000	0.741294	
mm_166243.1	chr5	74647606	74647806	+	1	NA	NA	NA	30166	NM_001159580	16924	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.005000	0.492537	
mm_1964.1	chr1	86487658	86487858	+	1	NA	NA	NA	-38978	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.125000	0.686567	
mm_124440.1	chr14	118706329	118706529	-	1	NA	NA	NA	-210	NM_001033336	239273	Mm.40537	NM_001033336	ENSMUSG00000032849	Abcc4	ABCC4-N1|D630049P08Rik|MOATB|MRP4	ATP-binding cassette, sub-family C (CFTR/MRP), member 4	protein-coding	0.120000	0.696517	
mm_60554.1	chr7	44481035	44481235	+	1	NA	NA	NA	-3382	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.457711	
mm_134033.1	chr16	5013432	5013632	-	1	NA	NA	NA	21	NM_133185	66049	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	0.130000	0.701493	
mm_147420.1	chr18	46198717	46198917	-	1	NA	NA	NA	1	NM_001170855	28105	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.140000	0.781095	
mm_92461.1	chr10	77924093	77924293	-	1	NA	NA	NA	-21657	NM_145152	237387	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.025000	0.572139	
mm_58325.1	chr6	146502086	146502286	-	1	NA	NA	NA	37	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.095000	0.746269	
mm_55367.1	chr6	57540990	57541190	-	1	NA	NA	NA	-5664	NM_175523	243382	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.015000	0.472637	-34(TTCTATAAATGC,-,0.00)
mm_122649.1	chr14	51908535	51908735	-	1	NA	NA	NA	4853	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.010000	0.542289	
mm_135923.1	chr16	69861695	69861895	-	1	NA	NA	NA	1949	NM_173069	224318	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0.005000	0.462687	
mm_26253.1	chr3	142496681	142496881	+	1	NA	NA	NA	-153	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.010000	0.427861	
mm_196.1	chr1	15805557	15805757	+	1	NA	NA	NA	11	NM_001286628	21749	Mm.4306	NM_009352	ENSMUSG00000025925	Terf1	Pin2|Trbf1|Trf1	telomeric repeat binding factor 1	protein-coding	0.110000	0.651741	
mm_11970.1	chr2	54436298	54436498	+	1	NA	NA	NA	11	NM_173030	271786	Mm.330227	NM_173030	ENSMUSG00000060988	Galnt13	A230002A12|A230020F20|BB182356	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	protein-coding	0.085000	0.726368	
mm_67743.1	chr7	90442537	90442737	-	1	NA	NA	NA	-144	NR_073436	233490	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	0.050000	0.457711	
mm_151630.1	chr19	3914602	3914802	-	1	NA	NA	NA	-1928	NM_001271444	225887	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0.020000	0.522388	
mm_109400.1	chr12	109948796	109948996	+	1	NA	NA	NA	201018	NR_037233	100499517		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	0.040000	0.641791	
mm_135013.1	chr16	32487057	32487257	-	1	NA	NA	NA	722	NM_145932	106407	Mm.476915	NM_145932	ENSMUSG00000035699	Slc51a	AV001382|AW261577|D630035O19Rik|OSTalpha|Osta	solute carrier family 51, alpha subunit	protein-coding	0.015000	0.497512	
mm_58160.1	chr6	142472873	142473073	-	1	NA	NA	NA	136	NM_145572	232493	Mm.275975	NM_145572	ENSMUSG00000030244	Gys2	BC021322|LGS	glycogen synthase 2	protein-coding	0.015000	0.487562	
mm_117762.1	chr13	96132498	96132698	-	1	NA	NA	NA	-21	NM_029210	75209	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	0.115000	0.726368	
mm_58813.1	chr7	16400179	16400379	+	1	NA	NA	NA	-917	NM_198631	330474	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.095000	0.681592	
mm_58110.1	chr6	138422437	138422637	-	1	NA	NA	NA	-568	NR_126073	319702	Mm.403785	NR_126072	ENSMUSG00000089957	A830011K09Rik	-	RIKEN cDNA A830011K09 gene	ncRNA	0.025000	0.402985	
mm_172678.1	chr8	51347315	51347515	+	1	NA	NA	NA	979303	NR_046067	100039954	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.045000	0.631841	
mm_130146.1	chr15	90980896	90981096	-	1	NA	NA	NA	68955	NM_001109041	16564	Mm.41379	NM_016705	ENSMUSG00000022629	Kif21a	-	kinesin family member 21A	protein-coding	0.025000	0.383085	
mm_170718.1	chr2	14739048	14739248	+	1	NA	NA	NA	18506	NR_028497	625342	Mm.484784	NR_028497		Gm13315	OTTMUSG00000011384	lactate dehydrogenase A pseudogene	pseudo	0.030000	0.492537	
mm_167613.1	chr9	56146020	56146220	+	1	NA	NA	NA	14950	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.010000	0.378109	
mm_87135.1	chr10	34297373	34297573	+	1	NA	NA	NA	52	NM_030203	72480	Mm.21485	NM_030203	ENSMUSG00000039485	Tspyl4	2610102M01Rik|B230210I21Rik|D10Bwg0791e	TSPY-like 4	protein-coding	0.045000	0.567164	
mm_43160.1	chr5	127027285	127027485	+	1	NA	NA	NA	-3404	NR_040685	71247	Mm.399586	NR_040685	ENSMUSG00000105490	4933438B17Rik	-	RIKEN cDNA 4933438B17 gene	ncRNA	0.020000	0.532338	
mm_145827.1	chr18	65438097	65438297	+	1	NA	NA	NA	7200	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.020000	0.482587	
mm_131254.1	chr16	10716067	10716267	+	1	NA	NA	NA	69369	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.010000	0.378109	
mm_96644.1	chr11	69331344	69331544	+	1	NA	NA	NA	5186	NM_010599	16499	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0.005000	0.557214	
mm_146661.1	chr18	12121376	12121576	-	1	NA	NA	NA	61	NR_110356	338363	Mm.271567	NM_178801	ENSMUSG00000049411	Tmem241	6030446N20Rik	transmembrane protein 241	protein-coding	0.070000	0.676617	
mm_82824.1	chr9	31120788	31120988	-	1	NA	NA	NA	10911	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.005000	0.552239	
mm_36215.1	chr4	62502113	62502313	-	1	NA	NA	NA	-13	NM_024257	72748	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0.095000	0.666667	
mm_4.1	chr1	4722774	4722974	+	1	NA	NA	NA	62852	NR_033530	27395	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	0.010000	0.507463	
mm_122638.1	chr14	51185622	51185822	-	1	NA	NA	NA	10201	NM_007449	11731	Mm.377077	NM_007449	ENSMUSG00000047894	Ang2	Angrp|Raa3|Rnase5b	angiogenin, ribonuclease A family, member 2	protein-coding	0.000000	0.452736	
mm_13621.1	chr2	113440889	113441089	+	1	NA	NA	NA	-75	NM_001285459	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.020000	0.557214	
mm_15238.1	chr2	154656790	154656990	+	1	NA	NA	NA	-136	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.080000	0.587065	
mm_56849.1	chr6	117937236	117937436	-	1	NA	NA	NA	-1	NM_001173372	108017	Mm.250392	NM_033648	ENSMUSG00000004988	Fxyd4	0610008I02Rik|AI267073|Chif	FXYD domain-containing ion transport regulator 4	protein-coding	0.020000	0.582090	-97(GAGCATAAGAGG,-,0.00),-34(GGGTTTAAAGAG,-,0.00)
mm_94479.1	chr11	6561041	6561241	+	1	NA	NA	NA	958	NM_001190344	216527	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0.015000	0.497512	-59(TTTTTTAGAGGG,+,0.00)
mm_131416.1	chr16	14705561	14705761	+	1	NA	NA	NA	-198	NM_011415	20583	Mm.4272	NM_011415	ENSMUSG00000022676	Snai2	Slug|Slugh|Snail2	snail family zinc finger 2	protein-coding	0.025000	0.462687	
mm_28280.1	chr3	88950201	88950401	-	1	NA	NA	NA	-19	NM_001164533	65111	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0.110000	0.721393	
mm_107380.1	chr12	32954466	32954666	+	1	NA	NA	NA	380	NM_198710	19027	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	0.130000	0.681592	
mm_147848.1	chr18	63682193	63682393	-	1	NA	NA	NA	10066	NM_016792	53382	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.030000	0.472637	
mm_9641.1	chr1	177193843	177194043	-	1	NA	NA	NA	54824	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.005000	0.318408	
mm_86193.1	chr9	119578906	119579106	-	1	NA	NA	NA	10	NM_021544	20271	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding	0.160000	0.850746	
mm_43553.1	chr5	137601122	137601322	+	1	NA	NA	NA	-163	NM_030037	68929	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	0.035000	0.457711	
mm_51627.1	chr6	85451964	85452164	+	1	NA	NA	NA	-94	NR_028081	73327	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	0.090000	0.641791	
mm_85539.1	chr9	106663158	106663358	-	1	NA	NA	NA	-7149	NM_001160353	108068	Mm.410822	NM_001160353	ENSMUSG00000023192	Grm2	4930441L02Rik|Gprc1b|mGluR2|mGluR7	glutamate receptor, metabotropic 2	protein-coding	0.010000	0.552239	
mm_121844.1	chr14	20618224	20618424	-	1	NA	NA	NA	30	NM_030180	78787	Mm.301173	NM_030180	ENSMUSG00000034235	Usp54	4930429G18Rik|AI115571|C030002J06Rik	ubiquitin specific peptidase 54	protein-coding	0.015000	0.487562	
mm_43171.1	chr5	127554627	127554827	+	1	NA	NA	NA	62665	NM_133895	100561	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.015000	0.547264	
mm_168129.1	chr10	25237185	25237385	-	1	NA	NA	NA	-37115	NM_001347460	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.005000	0.442786	
mm_58609.1	chr7	5059564	5059764	+	1	NA	NA	NA	-2479	NM_133671	22185	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.050000	0.592040	
mm_18198.1	chr2	45117371	45117571	-	1	NA	NA	NA	-4192	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.035000	0.587065	-28(CCCTTAATGCCC,+,0.00)
mm_123631.1	chr14	68504536	68504736	-	1	NA	NA	NA	29053	NM_007402	11500	Mm.261495	NM_007402	ENSMUSG00000022056	Adam7	ADAM 7|EAP1|EAPI	a disintegrin and metallopeptidase domain 7	protein-coding	0.025000	0.417910	
mm_69490.1	chr7	134214934	134215134	-	1	NA	NA	NA	10063	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.015000	0.417910	22(CCCTTTAAATGG,+,0.00),22(CCCTTTAAATGG,-,0.00)
mm_26879.1	chr3	17785442	17785642	-	1	NA	NA	NA	-4379	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.010000	0.472637	
mm_23291.1	chr3	52102730	52102930	+	1	NA	NA	NA	2176	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.055000	0.601990	-34(GGCCATTTAAGC,-,0.00)
mm_53572.1	chr6	137386493	137386693	+	1	NA	NA	NA	-24128	NM_001164402	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.015000	0.487562	
mm_102367.1	chr11	58390143	58390343	-	1	NA	NA	NA	9597	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.025000	0.517413	
mm_93421.1	chr10	108710726	108710926	-	1	NA	NA	NA	-10666	NM_203660	368203	Mm.452758	NM_203660		Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding	0.015000	0.417910	
mm_156554.1	chrX	151800793	151800993	+	1	NA	NA	NA	-2389	NM_021523	59026	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	0.040000	0.681592	
mm_42817.1	chr5	121848929	121849129	+	1	NA	NA	NA	1	NM_175474	231717	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.110000	0.726368	
mm_136452.1	chr16	94997378	94997578	-	1	NA	NA	NA	218	NM_001025584	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.080000	0.721393	
mm_112330.1	chr12	115869140	115869340	-	1	NA	NA	NA	-173446	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.005000	0.412935	-25(TACCATAAAAAC,-,0.00)
mm_112904.1	chr13	20902796	20902996	+	1	NA	NA	NA	108783	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.492537	
mm_44422.1	chr5	20855188	20855388	-	1	NA	NA	NA	26836	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.010000	0.348259	
mm_16445.1	chr2	180443947	180444147	+	1	NA	NA	NA	-16931	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.020000	0.542289	
mm_156852.1	chrX	164401041	164401241	+	1	NA	NA	NA	-18646	NM_011081	18700	Mm.3781	NM_011081	ENSMUSG00000031381	Piga	AI194334|Pig-a	phosphatidylinositol glycan anchor biosynthesis, class A	protein-coding	0.005000	0.452736	17(GCATTTAAACAG,+,0.00)
mm_152384.1	chr19	10304811	10305011	-	1	NA	NA	NA	-34	NM_198114	269060	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.130000	0.746269	
mm_11019.1	chr2	26609668	26609868	+	1	NA	NA	NA	-5351	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.000000	0.532338	
mm_81179.1	chr9	107340521	107340721	+	1	NA	NA	NA	-19	NM_175486	235599	Mm.71039	NM_175486	ENSMUSG00000037977	6430571L13Rik	-	RIKEN cDNA 6430571L13 gene	protein-coding	0.070000	0.706468	
mm_120088.1	chr14	57826141	57826341	+	1	NA	NA	NA	2	NM_026401	67840	Mm.319530	NM_026401	ENSMUSG00000021967	Mrpl57	2610025P17Rik|AV005697|Mrp63	mitochondrial ribosomal protein L57	protein-coding	0.135000	0.686567	
mm_108965.1	chr12	102401793	102401993	+	1	NA	NA	NA	37920	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.030000	0.537313	
mm_77785.1	chr9	3025414	3025614	+	1	NA	NA	NA	13229	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.358209	
mm_122423.1	chr14	44772364	44772564	-	1	NA	NA	NA	-47477	NM_001162954	666744	Mm.387002	NM_001162954	ENSMUSG00000091923	Gm8267	EG666744	predicted gene 8267	protein-coding	0.000000	0.422886	-49(CCTTTTAGAAAA,+,0.00),14(CCCTTAATAGCA,+,0.00)
mm_94349.1	chr11	4895222	4895422	+	1	NA	NA	NA	-21	NM_172438	107829	Mm.28969	NM_172438	ENSMUSG00000034274	Thoc5	1700060C24Rik|A430085L24Rik|Fmip|PK1.3|Sgk2	THO complex 5	protein-coding	0.055000	0.597015	
mm_160608.1	chr9	80136504	80136704	+	1	NA	NA	NA	-28430	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.005000	0.422886	
mm_95630.1	chr11	53631848	53632048	+	1	NA	NA	NA	2754	NM_008355	16163	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	0.010000	0.611940	
mm_89550.1	chr10	94688674	94688874	+	1	NA	NA	NA	-16	NM_029852	77048	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	0.140000	0.771144	
mm_19947.1	chr2	117298074	117298274	-	1	NA	NA	NA	44703	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.000000	0.452736	6(GCTTATATGAGG,+,0.00)
mm_86425.1	chr10	3789278	3789478	+	1	NA	NA	NA	49001	NM_001159942	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.005000	0.402985	10(CTTTTTATAGTC,+,0.00)
mm_48485.1	chr5	142501710	142501910	-	1	NA	NA	NA	28266	NM_019943	56522	Mm.441372	NM_019943	ENSMUSG00000074817	Papolb	PAP|Paplob|Papola-ps|Papt|Plap-ps|Tpap	poly (A) polymerase beta (testis specific)	protein-coding	0.005000	0.467662	
mm_163790.1	chr14	9955650	9955850	-	1	NA	NA	NA	71655	NR_030680	100042415	Mm.235938	NR_030680		Mnd1-ps	Gm3833	Mnd1 retrotransposed pseudogene	pseudo	0.010000	0.417910	
mm_155425.1	chrX	73492028	73492228	+	1	NA	NA	NA	8527	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.030000	0.527363	
mm_69434.1	chr7	132845832	132846032	-	1	NA	NA	NA	6715	NM_028095	72096	Mm.28631	NM_028095	ENSMUSG00000030960	Mettl10	2010208K18Rik	methyltransferase like 10	protein-coding	0.000000	0.283582	
mm_51018.1	chr6	65042519	65042719	+	1	NA	NA	NA	-48	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.080000	0.572139	
mm_84950.1	chr9	83146458	83146658	-	1	NA	NA	NA	49	NM_175074	94353	Mm.244426	NM_026122	ENSMUSG00000066456	Hmgn3	1110002A15Rik|6330514M13Rik|BB071015|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding	0.075000	0.676617	
mm_63686.1	chr7	130574791	130574991	+	1	NA	NA	NA	-2593	NM_001004468	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.015000	0.547264	
mm_139839.1	chr17	69159906	69160106	+	1	NA	NA	NA	3196	NM_013813	13823	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.020000	0.477612	
mm_144086.1	chr17	94834327	94834527	-	1	NA	NA	NA	372	NR_045964	100038746	Mm.456686	NR_045963	ENSMUSG00000066057	Gm1976	100038868	predicted gene 1976	ncRNA	0.030000	0.512438	
mm_100780.1	chr11	4808255	4808455	-	1	NA	NA	NA	24780	NM_001252253	18016	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	0.020000	0.467662	
mm_71416.1	chr8	46478628	46478828	+	1	NA	NA	NA	7691	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.025000	0.447761	-40(CTTTTTAAAAGG,+,0.00),-40(CTTTTTAAAAGG,-,0.00)
mm_113288.1	chr13	30166895	30167095	+	1	NA	NA	NA	30505	NM_153546	218121	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	0.025000	0.457711	
mm_76001.1	chr8	72475128	72475328	-	1	NA	NA	NA	5	NM_138585	27967	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	0.125000	0.661692	
mm_68019.1	chr7	100964181	100964381	-	1	NA	NA	NA	85	NM_183168	233571	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.015000	0.592040	
mm_66343.1	chr7	43473458	43473658	-	1	NA	NA	NA	10325	NM_001290316	75690	Mm.30200	NM_001290316	ENSMUSG00000070604	Vsig10l	-	V-set and immunoglobulin domain containing 10 like	protein-coding	0.000000	0.577114	
mm_151670.1	chr19	4188659	4188859	-	1	NA	NA	NA	2288	NM_178650	108995	Mm.288312	NM_178650	ENSMUSG00000040247	Tbc1d10c	1810062O14Rik|AI428527	TBC1 domain family, member 10c	protein-coding	0.005000	0.358209	
mm_52899.1	chr6	122695874	122696074	+	1	NA	NA	NA	-11515	NM_001289831	71950	Mm.6047	NM_028016	ENSMUSG00000012396	Nanog	2410002E02Rik|ENK|ecat4	Nanog homeobox	protein-coding	0.040000	0.537313	
mm_130098.1	chr15	89425735	89425935	-	1	NA	NA	NA	27	NM_009948	12895	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	0.020000	0.621891	
mm_4201.1	chr1	171229586	171229786	+	1	NA	NA	NA	4632	NM_013474	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.010000	0.447761	
mm_153824.1	chr19	46305470	46305670	-	1	NA	NA	NA	-125	NM_019408	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.070000	0.701493	
mm_32197.1	chr4	101419269	101419469	+	1	NA	NA	NA	48	NM_001177604	11639	Mm.42040	NM_009647	ENSMUSG00000028527	Ak4	AK 4|Ak-3|Ak-4|Ak3|Ak3l1|D4Ertd274e	adenylate kinase 4	protein-coding	0.115000	0.716418	
mm_27154.1	chr3	33082931	33083131	-	1	NA	NA	NA	29	NM_021483	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.010000	0.552239	
mm_49628.1	chr6	30804706	30804906	+	1	NA	NA	NA	63507	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.005000	0.552239	
mm_66549.1	chr7	45211702	45211902	-	1	NA	NA	NA	81	NM_015789	50722	Mm.27287	NM_015789	ENSMUSG00000030792	Dkkl1	AI414495|SGY|SGY-1|SGY1|Soggy|mSgy	dickkopf-like 1	protein-coding	0.075000	0.587065	
mm_75645.1	chr8	65037084	65037284	-	1	NA	NA	NA	152	NM_001297554	100038489	Mm.58847	NM_001297554	ENSMUSG00000079042	Apela	ENSMUSG00000074303|Ela|Ende|Gm10664	apelin receptor early endogenous ligand	protein-coding	0.015000	0.532338	
mm_141098.1	chr17	26004764	26004964	-	1	NA	NA	NA	16996	NM_153140	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.030000	0.597015	
mm_84207.1	chr9	60687944	60688144	-	1	NA	NA	NA	90	NM_145616	102747	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0.070000	0.577114	
mm_71629.1	chr8	57455887	57456087	+	1	NA	NA	NA	64	NM_009136	20284	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.005000	0.542289	
mm_144799.1	chr18	36109528	36109728	+	1	NA	NA	NA	3425	NR_015571	74966	Mm.379238	NM_030089		4930471G03Rik	1700007N01Rik	RIKEN cDNA 4930471G03 gene	ncRNA	0.025000	0.567164	
mm_145139.1	chr18	45559396	45559596	+	1	NA	NA	NA	-658	NM_080465	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.080000	0.661692	
mm_71189.1	chr8	40866626	40866826	+	1	NA	NA	NA	4359	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.015000	0.432836	
mm_51172.1	chr6	70726524	70726724	+	1	NA	NA	NA	65551	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.025000	0.482587	
mm_102668.1	chr11	65032340	65032540	-	1	NA	NA	NA	53405	NM_023479	68626	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	0.020000	0.507463	
mm_144319.1	chr18	12661908	12662108	+	1	NA	NA	NA	18475	NM_028341	72747	Mm.52526	NM_028341	ENSMUSG00000024424	Ttc39c	1700008N02Rik|2810439F02Rik	tetratricopeptide repeat domain 39C	protein-coding	0.020000	0.393035	
mm_19654.1	chr2	102901357	102901557	-	1	NA	NA	NA	208	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.050000	0.572139	
mm_81719.1	chr9	111641716	111641916	+	1	NA	NA	NA	48532	NM_016853	20840	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	0.000000	0.472637	
mm_15483.1	chr2	157561808	157562008	+	1	NA	NA	NA	1830	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.035000	0.562189	
mm_59266.1	chr7	24898270	24898470	+	1	NA	NA	NA	859	NM_007655	12518	Mm.1355	NM_007655	ENSMUSG00000003379	Cd79a	Ig-alpha|Iga|Igalpha|Ly-54|Ly54|mb-1	CD79A antigen (immunoglobulin-associated alpha)	protein-coding	0.025000	0.547264	
mm_134352.1	chr16	16600004	16600204	-	1	NA	NA	NA	-126	NM_001301817	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.115000	0.746269	
mm_54933.1	chr6	48445366	48445566	-	1	NA	NA	NA	359	NM_020589	68910	Mm.2464	NM_020589	ENSMUSG00000068551	Zfp467	1190001I08Rik|AB041616|AI426952|AV017623|EZI|MNCb-3350|Znf467	zinc finger protein 467	protein-coding	0.115000	0.716418	
mm_74966.1	chr8	27042593	27042793	-	1	NA	NA	NA	138	NM_054057	114863	Mm.277501	NM_054057	ENSMUSG00000031485	Prosc	1700024N20Rik|2200002F22Rik	proline synthetase co-transcribed	protein-coding	0.105000	0.686567	
mm_166939.1	chr7	42430551	42430751	-	1	NA	NA	NA	-282	NR_028441	628490	Mm.246518	NR_028441		Vmn2r-ps60	Casr-rs4|Gprc2a-rs4	vomeronasal 2, receptor, pseudogene 60	pseudo	0.000000	0.432836	
mm_125386.1	chr15	40681991	40682191	+	1	NA	NA	NA	27049	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding	0.025000	0.462687	
mm_48907.1	chr6	3763752	3763952	+	1	NA	NA	NA	-229	NM_001042725	12311	Mm.4642	NM_007588	ENSMUSG00000023964	Calcr	Clr	calcitonin receptor	protein-coding	0.060000	0.701493	
mm_114614.1	chr13	75849222	75849422	+	1	NA	NA	NA	9436	NM_053108	93692	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.010000	0.492537	
mm_12624.1	chr2	74697901	74698101	+	1	NA	NA	NA	238	NM_013555	15438	Mm.26544	NM_013555	ENSMUSG00000043342	Hoxd9	Hox-4.4|Hox-5.2	homeobox D9	protein-coding	0.105000	0.641791	
mm_26029.1	chr3	135439356	135439556	+	1	NA	NA	NA	697	NM_025356	66105	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.090000	0.686567	
mm_96463.1	chr11	67596518	67596718	+	1	NA	NA	NA	63	NM_001277079	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.015000	0.542289	
mm_119340.1	chr14	41072782	41072982	+	1	NA	NA	NA	-29	NM_027094	69496	Mm.55734	NM_027094	ENSMUSG00000021790	Dydc1	1700029M23Rik	DPY30 domain containing 1	protein-coding	0.055000	0.542289	
mm_147077.1	chr18	35562428	35562628	-	1	NA	NA	NA	370	NM_010771	17184	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0.140000	0.746269	
mm_36287.1	chr4	63861241	63861441	-	1	NA	NA	NA	-57	NM_009403	21949	Mm.4664	NM_009403	ENSMUSG00000028362	Tnfsf8	CD153|CD30LG|Cd30l|Tnlg3a	tumor necrosis factor (ligand) superfamily, member 8	protein-coding	0.045000	0.527363	
mm_102098.1	chr11	52335987	52336187	-	1	NA	NA	NA	-24775	NM_011694	22333	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.020000	0.547264	
mm_90597.1	chr10	128303288	128303488	+	1	NA	NA	NA	53	NM_001252326	103135	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	0.065000	0.562189	
mm_118618.1	chr14	21052514	21052714	+	1	NA	NA	NA	40	NM_134079	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.080000	0.661692	
mm_110601.1	chr12	56535881	56536081	-	1	NA	NA	NA	927	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.050000	0.631841	
mm_88094.1	chr10	68723734	68723934	+	1	NA	NA	NA	88	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.055000	0.666667	
mm_37081.1	chr4	116371654	116371854	-	1	NA	NA	NA	92427	NM_001042743	17776	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0.000000	0.447761	
mm_159971.1	chr6	99692477	99692677	+	1	NA	NA	NA	-102	NM_008158	14761	Mm.35009	NM_008158	ENSMUSG00000072875	Gpr27	-	G protein-coupled receptor 27	protein-coding	0.180000	0.835821	
mm_46128.1	chr5	92505381	92505581	-	1	NA	NA	NA	176	NM_007644	12492	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.110000	0.711443	
mm_127260.1	chr15	99704215	99704415	+	1	NA	NA	NA	2028	NM_031842	83797	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.055000	0.532338	
mm_52707.1	chr6	119388805	119389005	+	1	NA	NA	NA	28578	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.080000	0.592040	
mm_11771.1	chr2	38823244	38823444	+	1	NA	NA	NA	-29391	NR_029568	387176		NR_029568	ENSMUSG00000065423	Mir181a-2	Mirn181|Mirn181a|Mirn181a-2|miR-181|mir-181a|mir-181a-2	microRNA 181a-2	ncRNA	0.010000	0.432836	
mm_132545.1	chr16	37882913	37883113	+	1	NA	NA	NA	14613	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.030000	0.592040	
mm_134817.1	chr16	25177994	25178194	-	1	NA	NA	NA	-108723	NM_175165	71338	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding	0.015000	0.472637	
mm_172731.1	chr8	78081308	78081508	-	1	NA	NA	NA	-131934	NM_183096	73301	Mm.61243	NM_183096	ENSMUSG00000037101	Ttc29	1700031F13Rik	tetratricopeptide repeat domain 29	protein-coding	0.025000	0.512438	-15(TCCTTTATAAAG,-,0.00),-13(CTTTATAAAGCG,+,0.00)
mm_34788.1	chr4	154191227	154191427	+	1	NA	NA	NA	20614	NM_001162977	230971	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	0.000000	0.452736	48(GCATATATACAC,+,0.00)
mm_42690.1	chr5	119835043	119835243	+	1	NA	NA	NA	480	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.020000	0.592040	
mm_107748.1	chr12	59013337	59013537	+	1	NA	NA	NA	46	NM_025656	66603	Mm.35353	NM_025656	ENSMUSG00000060121	Gemin2	Sip1|gemin-2	gem (nuclear organelle) associated protein 2	protein-coding	0.085000	0.636816	
mm_129422.1	chr15	78405889	78406089	-	1	NA	NA	NA	-130	NM_009437	22117	Mm.15312	NM_009437	ENSMUSG00000044986	Tst	Rhodanese	thiosulfate sulfurtransferase, mitochondrial	protein-coding	0.040000	0.636816	
mm_73761.1	chr8	115190150	115190350	+	1	NA	NA	NA	516644	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.015000	0.358209	-50(GTGTATATAAAG,-,0.00)
mm_59756.1	chr7	28825241	28825441	+	1	NA	NA	NA	3	NM_016772	51798	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.090000	0.601990	
mm_7725.1	chr1	130715738	130715938	-	1	NA	NA	NA	-17	NM_008825	18640	Mm.249861	NM_008825	ENSMUSG00000026409	Pfkfb2	4930568D07Rik	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding	0.070000	0.691542	
mm_87494.1	chr10	51495928	51496128	+	1	NA	NA	NA	5130	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.005000	0.477612	
mm_54577.1	chr6	38110323	38110523	-	1	NA	NA	NA	1070	NM_029921	77522	Mm.387207	NM_029921	ENSMUSG00000029829	Tmem213	D630002J15Rik	transmembrane protein 213	protein-coding	0.005000	0.412935	
mm_169248.1	chr13	74865059	74865259	+	1	NA	NA	NA	-56399	NM_001301153	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.010000	0.487562	
mm_72992.1	chr8	93012361	93012561	+	1	NA	NA	NA	35731	NM_001013764	244595	Mm.390089	NM_001013764	ENSMUSG00000071047	Ces1a	Ces1l|EG244595|Gm4976	carboxylesterase 1A	protein-coding	0.010000	0.517413	
mm_144858.1	chr18	36702343	36702543	+	1	NA	NA	NA	-6518	NM_172831	240216	Mm.252323	NM_172831	ENSMUSG00000044719	E230025N22Rik	EG240216	Riken cDNA E230025N22 gene	protein-coding	0.015000	0.512438	
mm_141594.1	chr17	32424046	32424246	-	1	NA	NA	NA	21	NM_001271476	57757	Mm.86752	NM_021319	ENSMUSG00000079563	Pglyrp2	C730002N09Rik|PGRP-L|Pglyrpl|tagL	peptidoglycan recognition protein 2	protein-coding	0.010000	0.512438	
mm_142139.1	chr17	35969604	35969804	-	1	NA	NA	NA	46	NM_013854	224742	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	0.135000	0.746269	
mm_69325.1	chr7	128539990	128540190	-	1	NA	NA	NA	16507	NM_013863	29810	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0.060000	0.646766	
mm_66041.1	chr7	30664863	30665063	-	1	NA	NA	NA	31	NM_027999	71909	Mm.290410	NM_027999	ENSMUSG00000078762	Haus5	2310022K01Rik	HAUS augmin-like complex, subunit 5	protein-coding	0.065000	0.592040	
mm_129192.1	chr15	76374820	76375020	-	1	NA	NA	NA	18	NM_183099	73542	Mm.159026	NM_183099	ENSMUSG00000060794	Tssk5	1700091F14Rik	testis-specific serine kinase 5	protein-coding	0.010000	0.477612	
mm_84494.1	chr9	66878967	66879167	-	1	NA	NA	NA	40638	NM_173413	235442	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.015000	0.398010	
mm_41854.1	chr5	104440122	104440322	+	1	NA	NA	NA	4030	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.010000	0.398010	
mm_100212.1	chr11	116918699	116918899	+	1	NA	NA	NA	-64	NM_172948	268510	Mm.35141	NM_172948	ENSMUSG00000043857	Mgat5b	C330018B01|GnT-IX|mGnTVB	mannoside acetylglucosaminyltransferase 5, isoenzyme B	protein-coding	0.130000	0.751244	
mm_128919.1	chr15	73751890	73752090	-	1	NA	NA	NA	3964	NM_008975	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.055000	0.661692	
mm_37937.1	chr4	132922523	132922723	-	1	NA	NA	NA	-72	NM_001163792	230789	Mm.11473	NM_145553	ENSMUSG00000028878	Fam76a	-	family with sequence similarity 76, member A	protein-coding	0.160000	0.746269	
mm_141577.1	chr17	32350485	32350685	-	1	NA	NA	NA	-8	NM_017476	54194	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	0.065000	0.562189	
mm_50006.1	chr6	41058458	41058658	+	1	NA	NA	NA	-23049	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.393035	
mm_61597.1	chr7	80026105	80026305	+	1	NA	NA	NA	-23	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.045000	0.577114	
mm_11324.1	chr2	30416022	30416222	+	1	NA	NA	NA	72	NM_138748	110854	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.125000	0.691542	
mm_27553.1	chr3	58372355	58372555	-	1	NA	NA	NA	-42265	NM_001347233	72033	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.005000	0.517413	
mm_54167.1	chr6	23132887	23133087	-	1	NA	NA	NA	-1	NM_013930	30956	Mm.18651	NM_013930	ENSMUSG00000029695	Aass	LKR|LKR/SDH|LOR|LOR/SDH|Lorsdh|SDH	aminoadipate-semialdehyde synthase	protein-coding	0.015000	0.502488	
mm_164082.1	chr15	4119863	4120063	+	1	NA	NA	NA	-92557	NR_028266	414066	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	0.015000	0.323383	
mm_106366.1	chr11	118396617	118396817	-	1	NA	NA	NA	5214	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.025000	0.616915	
mm_3771.1	chr1	156439605	156439805	+	1	NA	NA	NA	-18790	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.020000	0.517413	
mm_153357.1	chr19	40166879	40167079	-	1	NA	NA	NA	20307	NM_145499	226105	Mm.29119	NM_145499	ENSMUSG00000060613	Cyp2c70	-	cytochrome P450, family 2, subfamily c, polypeptide 70	protein-coding	0.000000	0.253731	
mm_122422.1	chr14	43923495	43923695	-	1	NA	NA	NA	-227	NM_053112	93725	Mm.429087	NM_053112	ENSMUSG00000090166	Ear10	Raf2	eosinophil-associated, ribonuclease A family, member 10	protein-coding	0.015000	0.527363	
mm_20173.1	chr2	122369042	122369242	-	1	NA	NA	NA	-224	NM_001013829	435684	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0.135000	0.800995	
mm_40487.1	chr5	56157206	56157406	+	1	NA	NA	NA	1560613	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	0.030000	0.497512	
mm_63345.1	chr7	126967483	126967683	+	1	NA	NA	NA	-8331	NM_026638	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.025000	0.621891	
mm_558.1	chr1	38021637	38021837	+	1	NA	NA	NA	23727	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.010000	0.417910	
mm_92068.1	chr10	62578113	62578313	-	1	NA	NA	NA	244	NM_028197	72320	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.135000	0.746269	
mm_131127.1	chr16	5884909	5885109	+	1	NA	NA	NA	216	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.080000	0.552239	
mm_125914.1	chr15	76034606	76034806	+	1	NA	NA	NA	-20370	NM_134087	105732	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	0.110000	0.706468	
mm_97119.1	chr11	74830870	74831070	+	1	NA	NA	NA	46	NM_010813	17428	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.105000	0.706468	
mm_3123.1	chr1	134646673	134646873	+	1	NA	NA	NA	92	NM_009307	20980	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194	synaptotagmin II	protein-coding	0.110000	0.711443	
mm_139266.1	chr17	47785612	47785812	+	1	NA	NA	NA	-32	NM_011549	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.020000	0.611940	
mm_58446.1	chr7	3303434	3303634	+	1	NA	NA	NA	2	NM_011102	18752	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	0.075000	0.676617	
mm_74504.1	chr8	8484616	8484816	-	1	NA	NA	NA	176057	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.035000	0.507463	
mm_134941.1	chr16	31191869	31192069	-	1	NA	NA	NA	9269	NM_030138	78618	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.020000	0.507463	
mm_122999.1	chr14	54992632	54992832	-	1	NA	NA	NA	1817	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.030000	0.552239	
mm_133284.1	chr16	77432739	77432939	+	1	NA	NA	NA	103511	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.005000	0.368159	4(CCTTTTAAGTCA,+,0.00)
mm_46885.1	chr5	113952271	113952471	-	1	NA	NA	NA	41386	NM_198109	231637	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot homolog 1 (Drosophila)	protein-coding	0.000000	0.417910	34(TCTTTTAAGAGC,+,0.00),35(CTTTTAAGAGCA,+,0.00)
mm_52971.1	chr6	123229825	123230025	+	1	NA	NA	NA	82	NM_001190321	56620	Mm.271782	NM_020001	ENSMUSG00000023349	Clec4n	Clec6a|Clecsf10|Nkcl	C-type lectin domain family 4, member n	protein-coding	0.010000	0.482587	
mm_43873.1	chr5	143622407	143622607	+	1	NA	NA	NA	60	NM_011182	19159	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0.130000	0.726368	
mm_55789.1	chr6	82705176	82705376	-	1	NA	NA	NA	-52411	NM_025882	66979	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	0.025000	0.542289	
mm_45699.1	chr5	82124634	82124834	-	1	NA	NA	NA	-21	NR_138557	67327	Mm.87058	NR_138557		1700031L13Rik	-	RIKEN cDNA 1700031L13 gene	ncRNA	0.005000	0.333333	
mm_157902.1	chrX	77848002	77848202	-	1	NA	NA	NA	5398	NM_017471	54192	Mm.8034	NM_017471	ENSMUSG00000000003	Pbsn	PB|Prbs	probasin	protein-coding	0.010000	0.402985	
mm_60245.1	chr7	43768855	43769055	+	1	NA	NA	NA	-145	NM_027097	69511	Mm.20163	NM_027097	ENSMUSG00000044430	Klk12	2310008B01Rik|AI324852|KLK-L5	kallikrein related-peptidase 12	protein-coding	0.015000	0.532338	
mm_52680.1	chr6	117922555	117922755	+	1	NA	NA	NA	5361	NM_001166427	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.000000	0.393035	45(TGCTATATAGAG,-,0.00)
mm_89509.1	chr10	94141213	94141413	+	1	NA	NA	NA	-6618	NM_011629	22025	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	0.010000	0.447761	
mm_61791.1	chr7	83891908	83892108	+	1	NA	NA	NA	8	NM_023403	67943	Mm.117365	NM_023403	ENSMUSG00000038503	Mesdc2	2210015O11Rik|AW537813|mKIAA0081|mesd|msd	mesoderm development candidate 2	protein-coding	0.065000	0.646766	
mm_31914.1	chr4	85205119	85205319	+	1	NA	NA	NA	-237	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.045000	0.631841	
mm_124624.1	chr15	3290755	3290955	+	1	NA	NA	NA	12671	NM_001166063	100039139	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	ENSMUSG00000071814	coiled-coil domain containing 152	protein-coding	0.000000	0.492537	
mm_14029.1	chr2	122152710	122152910	+	1	NA	NA	NA	5123	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.005000	0.268657	
mm_163758.1	chr13	119791104	119791304	+	1	NA	NA	NA	-82	NM_001302550	72465	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0.115000	0.706468	
mm_170685.1	chr2	129315376	129315576	-	1	NA	NA	NA	-5504	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.020000	0.368159	
mm_49121.1	chr6	8517729	8517929	+	1	NA	NA	NA	-2229	NM_001286728	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.015000	0.427861	
mm_41178.1	chr5	88008096	88008296	+	1	NA	NA	NA	5671	NM_011422	20599	Mm.261199	NM_011422	ENSMUSG00000029280	Smr3a	AA589601|MSG1|MSG3|Smr1|Smr3	submaxillary gland androgen regulated protein 3A	protein-coding	0.015000	0.577114	
mm_85745.1	chr9	108567488	108567688	-	1	NA	NA	NA	-246	NM_023247	66706	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	0.080000	0.641791	
mm_101756.1	chr11	43385079	43385279	-	1	NA	NA	NA	-10718	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.025000	0.537313	
mm_6914.1	chr1	84839385	84839585	-	1	NA	NA	NA	-181	NM_133975	14897	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.090000	0.666667	
mm_116747.1	chr13	51793520	51793720	-	1	NA	NA	NA	127	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.130000	0.756219	
mm_163471.1	chr12	103894984	103895184	+	1	NA	NA	NA	9866	NM_009245	20702	Mm.439692	NM_009245	ENSMUSG00000079015	Serpina1c	Pi3|Pi6|Skalp|Spi1-3|Spi1-6|Wap3	serine (or cysteine) peptidase inhibitor, clade A, member 1C	protein-coding	0.020000	0.467662	
mm_17586.1	chr2	30415671	30415871	-	1	NA	NA	NA	-23	NM_007760	12908	Mm.20396	NM_007760	ENSMUSG00000026853	Crat	AW107812|CARAT	carnitine acetyltransferase	protein-coding	0.065000	0.582090	
mm_47065.1	chr5	116422700	116422900	-	1	NA	NA	NA	64	NM_030704	80888	Mm.21549	NM_030704	ENSMUSG00000041548	Hspb8	AU018630|AW413033|Cryac|D5Ucla4|E2IG1|H11|H11K|HSP20-like|HSP22	heat shock protein 8	protein-coding	0.030000	0.587065	
mm_75576.1	chr8	60983167	60983367	-	1	NA	NA	NA	44	NM_173873	12725	Mm.25263	NM_007711	ENSMUSG00000004319	Clcn3	Clc3	chloride channel, voltage-sensitive 3	protein-coding	0.145000	0.701493	
mm_124173.1	chr14	93812195	93812395	-	1	NA	NA	NA	76593	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.447761	
mm_129295.1	chr15	77257570	77257770	-	1	NA	NA	NA	49383	NM_001110827	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.010000	0.442786	
mm_121951.1	chr14	24369323	24369523	-	1	NA	NA	NA	76059	NM_001033214	105418	Mm.2077	NM_001033214	ENSMUSG00000038925	E330034G19Rik	AA415275|Zpac	RIKEN cDNA E330034G19 gene	protein-coding	0.005000	0.318408	-6(TTTTTAATGGGC,+,0.00)
mm_9896.1	chr1	186705481	186705681	-	1	NA	NA	NA	408	NM_009367	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.085000	0.681592	
mm_102194.1	chr11	54353191	54353391	-	1	NA	NA	NA	-17361	NM_029105	74847	Mm.486538	NM_029105	ENSMUSG00000020332	Meikin	4930404A10Rik	meiotic kinetochore factor	protein-coding	0.040000	0.532338	-96(GCCCATAAAAGT,-,0.00)
mm_1274.1	chr1	63445640	63445840	+	1	NA	NA	NA	-151	NM_011780	23792	Mm.124892	NM_011780	ENSMUSG00000025964	Adam23	AW046396|MDC3	a disintegrin and metallopeptidase domain 23	protein-coding	0.075000	0.671642	
mm_82325.1	chr9	8134258	8134458	-	1	NA	NA	NA	-64	NM_001045524	234915	Mm.101341	NM_001045524	ENSMUSG00000040729	Cep126	Kiaa1377|mKIAA1377	centrosomal protein 126	protein-coding	0.170000	0.761194	
mm_103976.1	chr11	84823447	84823647	-	1	NA	NA	NA	-4032	NM_145433	217038	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik|ENSMUSG00000054212	mitochondrial rRNA methyltransferase 1	protein-coding	0.030000	0.587065	
mm_4065.1	chr1	166130123	166130323	+	1	NA	NA	NA	-237	NM_021610	59290	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197	glycoprotein A33 (transmembrane)	protein-coding	0.005000	0.492537	
mm_11755.1	chr2	38489924	38490124	+	1	NA	NA	NA	-21673	NM_021606	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.025000	0.467662	
mm_47875.1	chr5	134688478	134688678	-	1	NA	NA	NA	12	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.160000	0.800995	
mm_45388.1	chr5	66146709	66146909	-	1	NA	NA	NA	4169	NM_001291226	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.010000	0.492537	
mm_68150.1	chr7	102250005	102250205	-	1	NA	NA	NA	13	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.115000	0.810945	
mm_130030.1	chr15	88954323	88954523	-	1	NA	NA	NA	-5	NM_172818	239591	Mm.86807	NM_172818	ENSMUSG00000022388	Ttll8	1700019P01Rik|4933401B17	tubulin tyrosine ligase-like family, member 8	protein-coding	0.050000	0.582090	
mm_21974.1	chr2	167349050	167349250	-	1	NA	NA	NA	28	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.170000	0.825871	
mm_826.1	chr1	50927427	50927627	+	1	NA	NA	NA	4	NM_019790	56363	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	0.115000	0.706468	
mm_36069.1	chr4	57951751	57951951	-	1	NA	NA	NA	4560	NM_011660	22166	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.025000	0.522388	
mm_118111.1	chr13	103921385	103921585	-	1	NA	NA	NA	-899	NM_001005868	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.095000	0.636816	
mm_107714.1	chr12	55847629	55847829	+	1	NA	NA	NA	11363	NM_001037756	52592	Mm.24761	NM_027867	ENSMUSG00000012076	Brms1l	0710008O11Rik|AI159718|BRMS1|D12Ertd407e	breast cancer metastasis-suppressor 1-like	protein-coding	0.000000	0.313433	
mm_26949.1	chr3	20270247	20270447	-	1	NA	NA	NA	5386	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.010000	0.358209	
mm_84514.1	chr9	67033832	67034032	-	1	NA	NA	NA	9939	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.025000	0.512438	
mm_17541.1	chr2	29787554	29787754	-	1	NA	NA	NA	17	NM_001290496	227682	Mm.245739	NM_145520	ENSMUSG00000039826	Trub2	G430055L02Rik	TruB pseudouridine (psi) synthase family member 2	protein-coding	0.050000	0.567164	
mm_71837.1	chr8	68902228	68902428	+	1	NA	NA	NA	21773	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.000000	0.462687	76(AGCCTTTTAAGC,-,0.00),78(CCTTTTAAGCAT,+,0.00)
mm_126406.1	chr15	80255156	80255356	+	1	NA	NA	NA	72	NM_009716	11911	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	0.085000	0.577114	
mm_102434.1	chr11	59506300	59506500	-	1	NA	NA	NA	240	NM_001291014	268417	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0.135000	0.786070	
mm_3491.1	chr1	150105785	150105985	+	1	NA	NA	NA	5854	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.288557	
mm_144576.1	chr18	31881146	31881346	+	1	NA	NA	NA	30657	NM_026006	67158	Mm.31537	NM_026006	ENSMUSG00000044982	Sft2d3	2610206C24Rik|AI847965|AW046173	SFT2 domain containing 3	protein-coding	0.015000	0.497512	
mm_153117.1	chr19	33224211	33224411	-	1	NA	NA	NA	167984	NM_001167818	67795	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	0.005000	0.537313	
mm_38980.1	chr4	150915186	150915386	-	1	NA	NA	NA	-4869	NM_011612	21942	Mm.244187	NM_011612	ENSMUSG00000028965	Tnfrsf9	4-1BB|A930040I11Rik|AA408498|AI325004|CDw137|Cd137|ILA|Ly63	tumor necrosis factor receptor superfamily, member 9	protein-coding	0.025000	0.452736	
mm_167158.1	chr7	132317298	132317498	-	1	NA	NA	NA	-243	NM_029935	77590	Mm.213582	NM_029935	ENSMUSG00000030930	Chst15	4631426J05Rik|BRAG|GalNAcS-6ST|MAd5|mKIAA0598	carbohydrate (N-acetylgalactosamine 4-sulfate 6-O) sulfotransferase 15	protein-coding	0.055000	0.542289	
mm_59834.1	chr7	29303912	29304112	+	1	NA	NA	NA	7	NM_013874	29861	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.140000	0.766169	
mm_57469.1	chr6	125231569	125231769	-	1	NA	NA	NA	191	NM_145391	213233	Mm.296902	NM_145391	ENSMUSG00000038213	Tapbpl	BC017613|TAPBPL-R|Tapbplr	TAP binding protein-like	protein-coding	0.020000	0.567164	
mm_64369.1	chr7	142442205	142442405	+	1	NA	NA	NA	-163	NM_009405	21953	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	0.020000	0.616915	
mm_119339.1	chr14	40972587	40972787	+	1	NA	NA	NA	-5791	NM_145928	52588	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.020000	0.492537	
mm_114989.1	chr13	97495838	97496038	+	1	NA	NA	NA	13237	NR_110431	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.015000	0.472637	
mm_154279.1	chr19	60790596	60790796	-	1	NA	NA	NA	-3	NM_010123	13669	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	0.155000	0.726368	
mm_108639.1	chr12	85774723	85774923	+	1	NA	NA	NA	28284	NM_145447	217721	Mm.301076	NM_145447	ENSMUSG00000034258	Mfsd7c	CCT|Flvcr2	major facilitator superfamily domain containing 7C	protein-coding	0.015000	0.532338	40(GCTTATAAAAAG,+,0.00),40(GCTTATAAAAAG,-,0.00)
mm_16862.1	chr2	11671023	11671223	-	1	NA	NA	NA	28331	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.015000	0.388060	
mm_68120.1	chr7	102116649	102116849	-	1	NA	NA	NA	-36	NM_001081424	504186	Mm.334074	NM_001081424	ENSMUSG00000066279	Chrna10	-	cholinergic receptor, nicotinic, alpha polypeptide 10	protein-coding	0.005000	0.532338	
mm_68590.1	chr7	116034403	116034603	-	1	NA	NA	NA	-3456	NM_001025560	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.035000	0.552239	
mm_138580.1	chr17	35470661	35470861	+	1	NA	NA	NA	672	NM_010391	15007	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	0.075000	0.646766	
mm_151741.1	chr19	4993618	4993818	-	1	NA	NA	NA	-3747	NM_153553	225872	Mm.287867	NM_153553	ENSMUSG00000045903	Npas4	LE-PAS|Nxf	neuronal PAS domain protein 4	protein-coding	0.010000	0.398010	-27(AGGTATAAAAGC,-,0.00)
mm_101774.1	chr11	44496202	44496402	-	1	NA	NA	NA	-22662	NM_028862	74315	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.005000	0.502488	
mm_57850.1	chr6	129470852	129471052	-	1	NA	NA	NA	1827	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.005000	0.482587	
mm_159012.1	chr1	165916734	165916934	-	1	NA	NA	NA	18114	NM_198933	18986	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0.005000	0.388060	
mm_36672.1	chr4	96077428	96077628	-	1	NA	NA	NA	12	NM_145548	230459	Mm.268175	NM_145548	ENSMUSG00000028571	Cyp2j13	-	cytochrome P450, family 2, subfamily j, polypeptide 13	protein-coding	0.040000	0.587065	
mm_110955.1	chr12	76710001	76710201	-	1	NA	NA	NA	446	NM_013675	20741	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0.095000	0.716418	
mm_69031.1	chr7	126797671	126797871	-	1	NA	NA	NA	1407	NM_001177307	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.035000	0.626866	
mm_70909.1	chr8	25676905	25677105	+	1	NA	NA	NA	36428	NM_001081269	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.005000	0.343284	
mm_114371.1	chr13	63108799	63108999	+	1	NA	NA	NA	-131130	NR_110520	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.000000	0.492537	
mm_160776.1	chr10	123263878	123264078	+	1	NA	NA	NA	-98	NM_182807	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	0.025000	0.417910	
mm_103108.1	chr11	69980182	69980382	-	1	NA	NA	NA	48	NM_001253700	54351	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.065000	0.557214	
mm_44157.1	chr5	150522518	150522718	+	1	NA	NA	NA	-3	NM_009765	12190	Mm.236256	NM_009765	ENSMUSG00000041147	Brca2	Fancd1|RAB163	breast cancer 2, early onset	protein-coding	0.145000	0.721393	
mm_74758.1	chr8	19142737	19142937	-	1	NA	NA	NA	2078	NM_001286493	546038	Mm.99206	NM_001034905	ENSMUSG00000059463	Spag11b	EG546038|Ep2c/h|Spag11c/h	sperm associated antigen 11B	protein-coding	0.005000	0.432836	
mm_58235.1	chr6	145034515	145034715	-	1	NA	NA	NA	14197	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.040000	0.477612	
mm_119990.1	chr14	55590896	55591096	+	1	NA	NA	NA	25	NM_011190	19188	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	0.030000	0.636816	
mm_28004.1	chr3	83010310	83010510	-	1	NA	NA	NA	2686	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.025000	0.482587	
mm_20148.1	chr2	121549518	121549718	-	1	NA	NA	NA	42895	NM_001290986	241627	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	0.025000	0.542289	
mm_82736.1	chr9	25252279	25252479	-	1	NA	NA	NA	-60	NM_009859	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.115000	0.616915	
mm_133676.1	chr16	92292289	92292489	+	1	NA	NA	NA	0	NM_134110	246133	Mm.156736	NM_134110	ENSMUSG00000039672	Kcne2	2200002I16Rik|AW048273|MiRP1	potassium voltage-gated channel, Isk-related subfamily, gene 2	protein-coding	0.020000	0.517413	
mm_164432.1	chr16	48818563	48818763	-	1	NA	NA	NA	1807	NM_023881	57263	Mm.21123	NM_023881	ENSMUSG00000022650	Retnlb	9030012B21Rik|Fizz2|RELMbeta|Relmb|Xcp3	resistin like beta	protein-coding	0.020000	0.527363	
mm_872.1	chr1	52155005	52155205	+	1	NA	NA	NA	35483	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.025000	0.517413	
mm_847.1	chr1	52008171	52008371	+	1	NA	NA	NA	31	NM_011487	20849	Mm.1550	NM_011487	ENSMUSG00000062939	Stat4	-	signal transducer and activator of transcription 4	protein-coding	0.015000	0.512438	
mm_83186.1	chr9	40994504	40994704	-	1	NA	NA	NA	10024	NM_001281954	54698	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	0.055000	0.562189	
mm_54638.1	chr6	38819107	38819307	-	1	NA	NA	NA	18104	NM_001136065	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.010000	0.517413	
mm_78936.1	chr9	45117792	45117992	+	1	NA	NA	NA	16	NM_001014761	72821	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	0.010000	0.422886	
mm_107936.1	chr12	71831021	71831221	+	1	NA	NA	NA	53	NM_172464	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.075000	0.611940	
mm_145727.1	chr18	64190411	64190611	+	1	NA	NA	NA	-63848	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.025000	0.462687	
mm_65552.1	chr7	27133178	27133378	-	1	NA	NA	NA	13323	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.040000	0.577114	
mm_15635.1	chr2	163007362	163007562	+	1	NA	NA	NA	-10010	NM_172150	245866	Mm.34034	NM_172150	ENSMUSG00000017858	Ift52	BC037708|NGD5	intraflagellar transport 52	protein-coding	0.015000	0.442786	
mm_22487.1	chr3	5575796	5575996	+	1	NA	NA	NA	352	NM_001163301	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.120000	0.646766	
mm_65550.1	chr7	27131207	27131407	-	1	NA	NA	NA	11352	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.055000	0.562189	
mm_62194.1	chr7	97724036	97724236	+	1	NA	NA	NA	14111	NM_175105	66333	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.015000	0.447761	
mm_11781.1	chr2	39007957	39008157	+	1	NA	NA	NA	-82	NM_028809	74192	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	0.125000	0.711443	
mm_123433.1	chr14	64440873	64441073	-	1	NA	NA	NA	53	NM_001253715	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.055000	0.567164	-100(CTTTTTATGCAC,+,0.00)
mm_105116.1	chr11	101095303	101095503	-	1	NA	NA	NA	32	NM_008949	19183	Mm.18344	NM_008949	ENSMUSG00000019303	Psmc3ip	C79099|GT198|HOP2|Tbpip	proteasome (prosome, macropain) 26S subunit, ATPase 3, interacting protein	protein-coding	0.080000	0.626866	
mm_19218.1	chr2	84650417	84650617	-	1	NA	NA	NA	-7	NM_001085453	12388	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.040000	0.522388	74(GTTTCTTAAAGG,-,0.00)
mm_62560.1	chr7	103826435	103826635	+	1	NA	NA	NA	1393	NM_001201391	100503605	Mm.288567	NM_001201391	ENSMUSG00000052305	Hbb-bs	Beta-s|Hbbt1|Hbbt2	hemoglobin, beta adult s chain	protein-coding	0.000000	0.338308	
mm_25494.1	chr3	109340637	109340837	+	1	NA	NA	NA	54	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.155000	0.796020	
mm_156995.1	chrX	7422887	7423087	-	1	NA	NA	NA	1	NR_027924	68355	Mm.45111	NR_027924		2010204K13Rik	0610010M13Rik|Cip7	RIKEN cDNA 2010204K13 gene	ncRNA	0.040000	0.482587	
mm_52228.1	chr6	103511973	103512173	+	1	NA	NA	NA	1197	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.020000	0.542289	
mm_29852.1	chr3	129995547	129995747	-	1	NA	NA	NA	-25441	NM_001293644	66815	Mm.31056	NM_025779	ENSMUSG00000027994	Ccdc109b	9030408N13Rik|MCUb	coiled-coil domain containing 109B	protein-coding	0.015000	0.432836	
mm_62813.1	chr7	113237221	113237421	+	1	NA	NA	NA	29856	NM_007489	11865	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0.000000	0.273632	
mm_99178.1	chr11	100860014	100860214	+	1	NA	NA	NA	-370	NM_001164062	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.020000	0.487562	
mm_62260.1	chr7	99334712	99334912	+	1	NA	NA	NA	18427	NM_009825	12406	Mm.22708	NM_009825	ENSMUSG00000070436	Serpinh1	BERF-1|Cbp1|Cbp2|Hsp47|J6|Serpinh2|gp46	serine (or cysteine) peptidase inhibitor, clade H, member 1	protein-coding	0.015000	0.562189	
mm_115309.1	chr13	112318297	112318497	+	1	NA	NA	NA	29879	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.015000	0.482587	
mm_77643.1	chr8	124434248	124434448	-	1	NA	NA	NA	-412	NM_171824	209966	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	0.200000	0.845771	
mm_107331.1	chr12	32017810	32018010	+	1	NA	NA	NA	43369	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.015000	0.537313	
mm_151052.1	chr19	47090712	47090912	+	1	NA	NA	NA	46	NM_011053	18572	Mm.41166	NM_011053	ENSMUSG00000025047	Pdcd11	1110021I22Rik|ALG-4|Pdcd7|mKIAA0185	programmed cell death 11	protein-coding	0.120000	0.636816	
mm_30623.1	chr4	8711666	8711866	+	1	NA	NA	NA	21360	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.005000	0.427861	
mm_130413.1	chr15	97977811	97978011	-	1	NA	NA	NA	13682	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.045000	0.616915	
mm_63619.1	chr7	128246873	128247073	+	1	NA	NA	NA	161	NM_001289552	21804	Mm.3248	NM_009365	ENSMUSG00000030782	Tgfb1i1	ARA55|Hic5|TSC-5|hic-5	transforming growth factor beta 1 induced transcript 1	protein-coding	0.055000	0.661692	
mm_65309.1	chr7	24765834	24766034	-	1	NA	NA	NA	-5623	NM_026862	68891	Mm.292848	NM_026862	ENSMUSG00000052212	Cd177	1190003K14Rik|Pdp3	CD177 antigen	protein-coding	0.030000	0.517413	
mm_143143.1	chr17	57220988	57221188	-	1	NA	NA	NA	-3860	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.040000	0.562189	27(CTGCATAAAGGC,-,0.00)
mm_138524.1	chr17	35241711	35241911	+	1	NA	NA	NA	65	NM_019693	53817	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	0.110000	0.701493	
mm_13987.1	chr2	121621322	121621522	+	1	NA	NA	NA	114699	NM_001290986	241627	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	0.005000	0.497512	
mm_168774.1	chr12	17464232	17464432	-	1	NA	NA	NA	-80541	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.015000	0.417910	73(AGCTTTTAAAAG,-,0.00),74(GCTTTTAAAAGC,+,0.00),74(GCTTTTAAAAGC,-,0.00),75(CTTTTAAAAGCT,+,0.00)
mm_27011.1	chr3	25893449	25893649	-	1	NA	NA	NA	259758	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.422886	
mm_65770.1	chr7	28761617	28761817	-	1	NA	NA	NA	4927	NM_001306222	18036	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	0.050000	0.616915	
mm_110773.1	chr12	70347230	70347430	-	1	NA	NA	NA	284	NM_001286386	94090	Mm.184012	NM_053167	ENSMUSG00000021071	Trim9	-	tripartite motif-containing 9	protein-coding	0.110000	0.756219	
mm_77034.1	chr8	109565598	109565798	-	1	NA	NA	NA	-97	NM_178380	64340	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|Prp16|mKIAA0224	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	0.075000	0.597015	
mm_172432.1	chr7	28981686	28981886	-	1	NA	NA	NA	102	NM_001285943	73830	Mm.29714	NM_028659	ENSMUSG00000053565	Eif3k	1200009C21Rik|Eif3s12	eukaryotic translation initiation factor 3, subunit K	protein-coding	0.050000	0.567164	
mm_39255.1	chr5	3522163	3522363	+	1	NA	NA	NA	-21570	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.005000	0.388060	
mm_151531.1	chr19	58759592	58759792	+	1	NA	NA	NA	-31	NM_011128	18947	Mm.212333	NM_011128	ENSMUSG00000025091	Pnliprp2	PLRP2	pancreatic lipase-related protein 2	protein-coding	0.030000	0.606965	
mm_29077.1	chr3	103914082	103914282	-	1	NA	NA	NA	62	NM_172684	229675	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0.080000	0.582090	
mm_116782.1	chr13	53184021	53184221	-	1	NA	NA	NA	101988	NM_013846	26564	Mm.342774	NM_013846	ENSMUSG00000021464	Ror2	Ntrkr2|mRor2	receptor tyrosine kinase-like orphan receptor 2	protein-coding	0.015000	0.512438	
mm_46263.1	chr5	99728976	99729176	-	1	NA	NA	NA	-16	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.120000	0.736318	
mm_54161.1	chr6	23097972	23098172	-	1	NA	NA	NA	34914	NM_013930	30956	Mm.18651	NM_013930	ENSMUSG00000029695	Aass	LKR|LKR/SDH|LOR|LOR/SDH|Lorsdh|SDH	aminoadipate-semialdehyde synthase	protein-coding	0.000000	0.442786	
mm_39074.1	chr4	154299785	154299985	-	1	NA	NA	NA	10	NM_001112744	230972	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.115000	0.756219	
mm_17551.1	chr2	30093482	30093682	-	1	NA	NA	NA	53	NM_025428	66220	Mm.22538	NM_025428	ENSMUSG00000015335	Zdhhc12	1190004A01Rik	zinc finger, DHHC domain containing 12	protein-coding	0.080000	0.691542	
mm_14279.1	chr2	128796826	128797026	+	1	NA	NA	NA	-21377	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.000000	0.457711	
mm_74259.1	chr8	124897185	124897385	+	1	NA	NA	NA	420	NM_198103	102058	Mm.347360	NM_198103	ENSMUSG00000074030	Exoc8	AI414418|EXO84|Exo84p|R74783|SEC84	exocyst complex component 8	protein-coding	0.130000	0.776119	
mm_87813.1	chr10	60301920	60302120	+	1	NA	NA	NA	17559	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.005000	0.552239	
mm_60961.1	chr7	47699866	47700066	+	1	NA	NA	NA	-98594	NM_153067	233222	Mm.240142	NM_153067	ENSMUSG00000078698	Mrgpra3	Mrga3	MAS-related GPR, member A3	protein-coding	0.015000	0.407960	
mm_97986.1	chr11	83942022	83942222	+	1	NA	NA	NA	32	NM_030096	78394	Mm.280544	NM_030096	ENSMUSG00000020677	Ddx52	2700029C06Rik|ROK1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 52	protein-coding	0.095000	0.606965	
mm_1695.1	chr1	75142668	75142868	+	1	NA	NA	NA	-18	NM_170755	227298	Mm.273062	NM_170755	ENSMUSG00000049339	Fam134a	-	family with sequence similarity 134, member A	protein-coding	0.175000	0.741294	
mm_170582.1	chr19	5742334	5742534	+	1	NA	NA	NA	1530	NM_008520	16998	Mm.182396	NM_008520	ENSMUSG00000024940	Ltbp3	Ltbp2|mFLJ00070	latent transforming growth factor beta binding protein 3	protein-coding	0.105000	0.716418	
mm_162282.1	chr1	20605982	20606182	+	1	NA	NA	NA	11975	NM_153179	241035	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	0.010000	0.447761	
mm_86423.1	chr10	3740558	3740758	+	1	NA	NA	NA	281	NM_001159942	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.065000	0.751244	
mm_50355.1	chr6	48598586	48598786	+	1	NA	NA	NA	4803	NM_001079904	58887	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	0.000000	0.432836	
mm_42609.1	chr5	117842040	117842240	+	1	NA	NA	NA	-24699	NM_008712	18125	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.085000	0.686567	
mm_167568.1	chr9	42296727	42296927	+	1	NA	NA	NA	-32527	NM_172769	235293	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	0.020000	0.492537	
mm_134718.1	chr16	22896462	22896662	-	1	NA	NA	NA	-2176	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.005000	0.492537	
mm_55031.1	chr6	48951356	48951556	-	1	NA	NA	NA	21560	NM_001081273	69761	Mm.333053	NM_001081273	ENSMUSG00000029813	1600015I10Rik	AI429442|Doxl1	RIKEN cDNA 1600015I10 gene	protein-coding	0.005000	0.462687	
mm_155616.1	chrX	83087700	83087900	+	1	NA	NA	NA	138930	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.010000	0.298507	
mm_15726.1	chr2	164084513	164084713	+	1	NA	NA	NA	10435	NM_021420	58231	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.020000	0.417910	83(GACTTTTAAAGA,-,0.00),84(ACTTTTAAAGAT,+,0.00)
mm_111611.1	chr12	102401466	102401666	-	1	NA	NA	NA	38247	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.005000	0.452736	
mm_88235.1	chr10	71347696	71347896	+	1	NA	NA	NA	33	NM_027184	69718	Mm.245867	NM_027184	ENSMUSG00000060733	Ipmk	2410017C19Rik|AA408208|Impk	inositol polyphosphate multikinase	protein-coding	0.150000	0.776119	
mm_32929.1	chr4	119195414	119195614	+	1	NA	NA	NA	-11	NM_001038998	69216	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	0.120000	0.756219	
mm_150495.1	chr19	39016656	39016856	+	1	NA	NA	NA	9737	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.005000	0.442786	
mm_165374.1	chr2	128306908	128307108	+	1	NA	NA	NA	122343	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.020000	0.547264	
mm_135916.1	chr16	67605902	67606102	-	1	NA	NA	NA	14906	NM_001347247	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.005000	0.313433	
mm_167206.1	chr7	144284318	144284518	+	1	NA	NA	NA	33	NM_001081370	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.055000	0.676617	
mm_161573.1	chr16	22163182	22163382	-	1	NA	NA	NA	17	NM_183029	319765	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.185000	0.815920	
mm_156376.1	chrX	139671827	139672027	+	1	NA	NA	NA	-13069	NM_001081499	245638	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	0.015000	0.353234	
mm_137292.1	chr17	24752848	24753048	+	1	NA	NA	NA	-55	NM_001012402	328779	Mm.328848	NM_001012402	ENSMUSG00000039628	Hs3st6	3-OST-6	heparan sulfate (glucosamine) 3-O-sulfotransferase 6	protein-coding	0.110000	0.756219	
mm_117806.1	chr13	97482487	97482687	-	1	NA	NA	NA	-114	NR_110430	100039691	Mm.219358	NR_110430	ENSMUSG00000078952	Lncenc1	ENSMUSG00000078952|Gm11019|Gm2373|Lincenc1|Platr18|linc-Enc1	long non-coding RNA, embryonic stem cells expressed 1	ncRNA	0.000000	0.477612	38(TTCCTTAAAAGG,-,0.00),40(CCTTAAAAGGTA,+,0.00)
mm_13484.1	chr2	106304646	106304846	+	1	NA	NA	NA	218357	NR_040637	329483	Mm.246777	NR_040637	ENSMUSG00000087226	Gm14015	9330126M15|OTTMUSG00000015366	predicted gene 14015	ncRNA	0.005000	0.477612	
mm_152807.1	chr19	22340617	22340817	-	1	NA	NA	NA	-107491	NM_177341	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.015000	0.502488	
mm_159819.1	chr5	122137962	122138162	-	1	NA	NA	NA	0	NM_183307	330188	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0.020000	0.497512	
mm_121437.1	chr14	120418787	120418987	+	1	NA	NA	NA	-59574	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.020000	0.487562	
mm_130122.1	chr15	89568150	89568350	-	1	NA	NA	NA	-76	NM_013455	11434	Mm.57	NM_013455	ENSMUSG00000022622	Acr	-	acrosin prepropeptide	protein-coding	0.010000	0.567164	
mm_160680.1	chr10	14544956	14545156	-	1	NA	NA	NA	-20	NM_001002268	215798	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.115000	0.661692	
mm_132427.1	chr16	35661011	35661211	+	1	NA	NA	NA	108245	NM_153550	224132	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0.000000	0.427861	
mm_32372.1	chr4	105718817	105719017	+	1	NA	NA	NA	561570	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.005000	0.477612	-25(GTGTATATAAAG,-,0.00)
mm_58629.1	chr7	5083622	5083822	+	1	NA	NA	NA	3487	NM_001252454	13854	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0.045000	0.532338	
mm_29374.1	chr3	108722072	108722272	-	1	NA	NA	NA	127	NM_029522	76123	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0.115000	0.746269	
mm_80046.1	chr9	69289745	69289945	+	1	NA	NA	NA	4	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.125000	0.746269	38(CCTCTTATGGCT,+,0.00)
mm_70407.1	chr8	11354224	11354424	+	1	NA	NA	NA	-41498	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.020000	0.487562	
mm_127957.1	chr15	11720461	11720661	-	1	NA	NA	NA	185113	NM_008728	18162	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	0.005000	0.388060	
mm_90476.1	chr10	127866377	127866577	+	1	NA	NA	NA	1	NM_145424	216454	Mm.214923	NM_145424	ENSMUSG00000074639	BC089597	CRAD-L	cDNA sequence BC089597	protein-coding	0.010000	0.477612	
mm_129298.1	chr15	77306803	77307003	-	1	NA	NA	NA	150	NM_001110827	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.110000	0.706468	
mm_26238.1	chr3	141465101	141465301	+	1	NA	NA	NA	-363	NM_009472	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.150000	0.781095	
mm_88316.1	chr10	75531917	75532117	+	1	NA	NA	NA	13975	NM_026095	67332	Mm.45151	NM_026095	ENSMUSG00000020180	Snrpd3	1700043E15Rik|2310009E13Rik|AW046420|SMD3	small nuclear ribonucleoprotein D3	protein-coding	0.025000	0.462687	
mm_6905.1	chr1	84837703	84837903	-	1	NA	NA	NA	1501	NM_133975	14897	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.040000	0.601990	
mm_33179.1	chr4	126058520	126058720	+	1	NA	NA	NA	55	NM_172701	230751	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	0.065000	0.577114	
mm_52894.1	chr6	122626319	122626519	+	1	NA	NA	NA	-5	NM_139218	73708	Mm.27982	NM_139218	ENSMUSG00000046323	Dppa3	2410075G02Rik|PCG7|PGC7|Stella	developmental pluripotency-associated 3	protein-coding	0.015000	0.487562	-32(CTGTATAAAAGG,-,0.00)
mm_110943.1	chr12	76612566	76612766	-	1	NA	NA	NA	-64741	NR_046044	100504549	Mm.440349	NR_046044		AI463170	-	expressed sequence AI463170	ncRNA	0.035000	0.587065	
mm_80679.1	chr9	90351895	90352095	+	1	NA	NA	NA	-81226	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.005000	0.442786	-21(CTTTTTAAAGTG,+,0.00)
mm_156148.1	chrX	129869721	129869921	+	1	NA	NA	NA	120079	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.000000	0.412935	
mm_91130.1	chr10	19594595	19594795	-	1	NA	NA	NA	2746	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.005000	0.547264	
mm_134516.1	chr16	19200252	19200452	-	1	NA	NA	NA	86389	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.000000	0.482587	-32(GCCTATAAAAGG,-,0.00)
mm_87101.1	chr10	33156989	33157189	+	1	NA	NA	NA	73606	NM_029726	76757	Mm.338508	NM_029726	ENSMUSG00000019787	Trdn	2310045H21Rik|EG432451|TDN	triadin	protein-coding	0.005000	0.422886	
mm_92346.1	chr10	75859902	75860102	-	1	NA	NA	NA	248	NM_010798	17319	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor	protein-coding	0.055000	0.671642	
mm_57023.1	chr6	122282508	122282708	-	1	NA	NA	NA	225	NM_016970	50928	Mm.20434	NM_016970	ENSMUSG00000030114	Klrg1	2F1-Ag|MAFA|MAFA-L	killer cell lectin-like receptor subfamily G, member 1	protein-coding	0.020000	0.502488	
mm_153044.1	chr19	32068646	32068846	-	1	NA	NA	NA	34394	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.005000	0.502488	
mm_44889.1	chr5	35093014	35093214	-	1	NA	NA	NA	12583	NM_013587	16976	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.015000	0.492537	
mm_45920.1	chr5	89441541	89441741	-	1	NA	NA	NA	16257	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.010000	0.383085	
mm_70009.1	chr7	142443272	142443472	-	1	NA	NA	NA	904	NM_009405	21953	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	0.025000	0.552239	
mm_76486.1	chr8	85700824	85701024	-	1	NA	NA	NA	19	NR_106189	102465898		NR_106189	ENSMUSG00000098388	Mir8109	Gm27495|mmu-mir-8109	microRNA 8109	ncRNA	0.185000	0.805970	
mm_121533.1	chr14	122280674	122280874	+	1	NA	NA	NA	-47136	NR_015532	68245	Mm.443285	NR_015532	ENSMUSG00000100585	1700108J01Rik	-	RIKEN cDNA 1700108J01 gene	ncRNA	0.045000	0.507463	
mm_102996.1	chr11	69686846	69687046	-	1	NA	NA	NA	-1392	NM_023517	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.035000	0.611940	
mm_99895.1	chr11	109649307	109649507	+	1	NA	NA	NA	2	NM_001313974	19084	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.025000	0.487562	
mm_102748.1	chr11	67255508	67255708	-	1	NA	NA	NA	17796	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.025000	0.522388	
mm_162955.1	chr11	4236685	4236885	+	1	NA	NA	NA	0	NM_001013365	18413	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.030000	0.636816	
mm_18272.1	chr2	52335660	52335860	-	1	NA	NA	NA	3038	NM_010889	17996	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	0.040000	0.527363	
mm_1779.1	chr1	78511742	78511942	+	1	NA	NA	NA	782	NM_026713	68393	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	0.055000	0.636816	
mm_106024.1	chr11	116027754	116027954	-	1	NA	NA	NA	-2462	NM_001286006	217331	Mm.297706	NM_172569	ENSMUSG00000020770	Unk	B230379M23Rik|Zc3h5|Zc3hdc5|mKIAA1753	unkempt family zinc finger	protein-coding	0.010000	0.547264	
mm_19394.1	chr2	91629146	91629346	-	1	NA	NA	NA	7211	NM_010168	14061	Mm.89048	NM_010168	ENSMUSG00000027249	F2	Cf-2|Cf2|FII	coagulation factor II	protein-coding	0.025000	0.557214	
mm_655.1	chr1	40431322	40431522	+	1	NA	NA	NA	1852	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.010000	0.398010	
mm_158715.1	chrX	162643460	162643660	-	1	NA	NA	NA	98	NM_001290633	194590	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	0.125000	0.761194	
mm_110618.1	chr12	57007725	57007925	-	1	NA	NA	NA	152818	NM_001167976	217593	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0.005000	0.363184	
mm_29505.1	chr3	116129520	116129720	-	1	NA	NA	NA	68	NM_011693	22329	Mm.76649	NM_011693	ENSMUSG00000027962	Vcam1	CD106|Vcam-1	vascular cell adhesion molecule 1	protein-coding	0.015000	0.472637	
mm_58337.1	chr6	146647512	146647712	-	1	NA	NA	NA	190	NR_038089	626175	Mm.391544	NM_001178001		Gm6654	EG626175	predicted pseudogene 6654	pseudo	0.035000	0.487562	
mm_109509.1	chr12	111452366	111452566	+	1	NA	NA	NA	9805	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.000000	0.452736	
mm_50877.1	chr6	55484511	55484711	+	1	NA	NA	NA	32633	NM_007407	11517	Mm.44245	NM_007407	ENSMUSG00000029778	Adcyap1r1	2900024I10Rik|AI846590|PAC1|PAC1R|PACAP1-R	adenylate cyclase activating polypeptide 1 receptor 1	protein-coding	0.005000	0.537313	
mm_121818.1	chr14	20452098	20452298	-	1	NA	NA	NA	27	NM_001163638	76670	Mm.159759	NM_029698	ENSMUSG00000039543	Cfap70	Ttc18	cilia and flagella associated protein 70	protein-coding	0.015000	0.472637	12(CCTTTTAGGGGC,+,0.00)
mm_68447.1	chr7	110006530	110006730	-	1	NA	NA	NA	16	NR_037959	69781	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	0.005000	0.542289	
mm_123564.1	chr14	66868990	66869190	-	1	NA	NA	NA	240	NM_001034881	432870	Mm.425890	NM_001034881	ENSMUSG00000075553	Gm5464	EG432870	predicted gene 5464	protein-coding	0.145000	0.761194	
mm_104932.1	chr11	100050450	100050650	-	1	NA	NA	NA	1	NM_010659	16660	Mm.439673	NM_010659	ENSMUSG00000048981	Krt31	Ha1|Kha1|Krt1-1|MKHA-1	keratin 31	protein-coding	0.010000	0.497512	-33(GCTTATAAAGTC,+,0.00)
mm_77345.1	chr8	119574727	119574927	-	1	NA	NA	NA	373	NM_175185	72552	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	0.070000	0.606965	
mm_76761.1	chr8	95576237	95576437	-	1	NA	NA	NA	-730	NM_001310539	70993	Mm.486561	NM_027640	ENSMUSG00000048400	Prss54	4931432M23Rik|Klkbl4	protease, serine 54	protein-coding	0.045000	0.482587	
mm_170910.1	chr2	32961641	32961841	+	1	NA	NA	NA	29	NM_009076	269261	Mm.250030	NM_009076	ENSMUSG00000038900	Rpl12	E430018F03	ribosomal protein L12	protein-coding	0.110000	0.626866	
mm_151388.1	chr19	56397121	56397321	+	1	NA	NA	NA	92	NM_007611	12369	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.120000	0.716418	
mm_152608.1	chr19	11868965	11869165	-	1	NA	NA	NA	2149	NM_001011775	257938	Mm.377309	NM_001011775	ENSMUSG00000067545	Olfr1419	MOR266-10	olfactory receptor 1419	protein-coding	0.085000	0.666667	
mm_123996.1	chr14	75786901	75787101	-	1	NA	NA	NA	36	NM_026232	67554	Mm.46067	NM_026232	ENSMUSG00000022003	Slc25a30	4933433D23Rik|AV025504|AV221431|AW319655|KMCP1	solute carrier family 25, member 30	protein-coding	0.130000	0.716418	
mm_160159.1	chr7	44249968	44250168	+	1	NA	NA	NA	-82	NR_028533	100217433		NR_028533	ENSMUSG00000095472	Snord88a	MBII-211	small nucleolar RNA, C/D box 88A	snoRNA	0.005000	0.547264	
mm_125707.1	chr15	68259180	68259380	+	1	NA	NA	NA	-424	NM_198644	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.045000	0.472637	
mm_123342.1	chr14	63137980	63138180	-	1	NA	NA	NA	15618	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.000000	0.482587	
mm_13907.1	chr2	120489998	120490198	+	1	NA	NA	NA	13189	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.000000	0.398010	
mm_97901.1	chr11	83409643	83409843	+	1	NA	NA	NA	-329	NM_001013386	276952	Mm.66275	NM_001013386	ENSMUSG00000020684	Rasl10b	B230331P10Rik|Gm729|VTS58635	RAS-like, family 10, member B	protein-coding	0.170000	0.865672	
mm_37516.1	chr4	124120431	124120631	-	1	NA	NA	NA	203098	NM_017475	54170	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.015000	0.537313	
mm_163219.1	chr11	101396088	101396288	+	1	NA	NA	NA	21245	NM_144829	69684	Mm.146283	NM_144829	ENSMUSG00000075528	Aarsd1	1110069E20Rik|2310044P18Rik|AA589600|AlaX|AlaXp-II	alanyl-tRNA synthetase domain containing 1	protein-coding	0.005000	0.487562	
mm_66811.1	chr7	47252900	47253100	-	1	NA	NA	NA	-152	NM_001288801	668725	Mm.436563	NM_001177566	ENSMUSG00000074111	Mrgpra9	EG668725|MrgA9	MAS-related GPR, member A9	protein-coding	0.005000	0.427861	
mm_66236.1	chr7	35318323	35318523	-	1	NA	NA	NA	17	NM_026181	67471	Mm.358705	NM_026181	ENSMUSG00000063808	Gpatch1	1300003A17Rik|ECGP|Gpatc1	G patch domain containing 1	protein-coding	0.070000	0.587065	-38(GCCTATAGAGGC,+,0.00)
mm_21907.1	chr2	166567117	166567317	-	1	NA	NA	NA	-105501	NR_105783	102465188		NR_105783	ENSMUSG00000098675	Mir6364	Gm27327|mmu-mir-6364	microRNA 6364	ncRNA	0.015000	0.477612	
mm_126158.1	chr15	78428352	78428552	+	1	NA	NA	NA	-112	NM_001289672	72844	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	0.025000	0.527363	
mm_106909.1	chr12	8015863	8016063	+	1	NA	NA	NA	38286	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.412935	-81(GCTTTTAAATCC,+,0.00)
mm_120984.1	chr14	78849138	78849338	+	1	NA	NA	NA	60	NM_173758	219189	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	0.095000	0.721393	
mm_88301.1	chr10	75316964	75317164	+	1	NA	NA	NA	187	NM_009630	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.100000	0.716418	
mm_21947.1	chr2	167062566	167062766	-	1	NA	NA	NA	-268	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.115000	0.746269	
mm_157286.1	chrX	20861087	20861287	-	1	NA	NA	NA	1995	NR_049190	100885829		NR_049190	ENSMUSG00000093408	Mir5617	Gm25192|mir-5617|mmu-mir-5617	microRNA 5617	ncRNA	0.005000	0.437811	
mm_150449.1	chr19	38096985	38097185	+	1	NA	NA	NA	6	NM_181748	107221	Mm.35288	NM_181748	ENSMUSG00000054200	Ffar4	AI552415|GT01|Gpr120|Gpr129|KPG_013|O3far1|Pgr4	free fatty acid receptor 4	protein-coding	0.075000	0.686567	
mm_7475.1	chr1	120495934	120496134	-	1	NA	NA	NA	9050	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.005000	0.482587	
mm_138055.1	chr17	33926528	33926728	+	1	NA	NA	NA	-3266	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.005000	0.572139	
mm_38651.1	chr4	143276058	143276258	-	1	NA	NA	NA	23406	NM_010329	14726	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding	0.015000	0.487562	
mm_22462.1	chr3	3507947	3508147	+	1	NA	NA	NA	17	NM_013920	30942	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.035000	0.432836	
mm_57722.1	chr6	128890861	128891061	-	1	NA	NA	NA	163	NM_001254946	232406	Mm.30745	NM_001254946	ENSMUSG00000090164	BC035044	-	cDNA sequence BC035044	protein-coding	0.005000	0.477612	
mm_58612.1	chr7	5061612	5061812	+	1	NA	NA	NA	-431	NM_133671	22185	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.085000	0.601990	
mm_138939.1	chr17	43953264	43953464	+	1	NA	NA	NA	173	NM_030598	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.015000	0.601990	
mm_84528.1	chr9	67047776	67047976	-	1	NA	NA	NA	1337	NM_001164255	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.025000	0.577114	
mm_125299.1	chr15	37135808	37136008	+	1	NA	NA	NA	-97128	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	0.065000	0.606965	
mm_74641.1	chr8	13254082	13254282	-	1	NA	NA	NA	-20	NM_172750	234072	Mm.132785	NM_172750	ENSMUSG00000031448	Adprhl1	Arh2|D330008N11Rik	ADP-ribosylhydrolase like 1	protein-coding	0.020000	0.562189	
mm_67093.1	chr7	68768230	68768430	-	1	NA	NA	NA	-19092	NM_025549	66412	Mm.251199	NM_025549	ENSMUSG00000042659	Arrdc4	2410003C09Rik|AV216361	arrestin domain containing 4	protein-coding	0.005000	0.452736	
mm_142282.1	chr17	40222240	40222440	-	1	NA	NA	NA	-13731	NM_031190	18663	Mm.717	NM_031190	ENSMUSG00000031233	Pgk2	Pgk-2|Tcp-2	phosphoglycerate kinase 2	protein-coding	0.005000	0.373134	
mm_149284.1	chr19	10629216	10629416	+	1	NA	NA	NA	-4917	NM_027913	71768	Mm.169261	NM_027913	ENSMUSG00000043789	Vwce	1300015B04Rik	von Willebrand factor C and EGF domains	protein-coding	0.000000	0.502488	
mm_58053.1	chr6	136857335	136857535	-	1	NA	NA	NA	165	NM_026639	109978	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	0.050000	0.517413	
mm_5298.1	chr1	21291458	21291658	-	1	NA	NA	NA	6754	NR_002858	241041	Mm.290634	NR_002858	ENSMUSG00000025936	Gm4956	EG241041	predicted gene 4956	pseudo	0.005000	0.432836	
mm_5740.1	chr1	45442635	45442835	-	1	NA	NA	NA	60547	NM_007737	12832	Mm.10299	NM_007737	ENSMUSG00000026042	Col5a2	1110014L14Rik	collagen, type V, alpha 2	protein-coding	0.005000	0.457711	
mm_5053.1	chr1	194943760	194943960	+	1	NA	NA	NA	5039	NM_001111059	12490	Mm.29798	NM_133654	ENSMUSG00000016494	Cd34	AU040960	CD34 antigen	protein-coding	0.000000	0.442786	
mm_157650.1	chrX	57326138	57326338	-	1	NA	NA	NA	12491	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	0.075000	0.696517	
mm_84455.1	chr9	66520226	66520426	-	1	NA	NA	NA	-5733	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.015000	0.492537	-48(CACCTGAAAAGG,-,0.00)
mm_41815.1	chr5	103784323	103784523	+	1	NA	NA	NA	29850	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.025000	0.567164	
mm_79642.1	chr9	59558007	59558207	+	1	NA	NA	NA	18567	NM_010421	15211	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.015000	0.467662	
mm_74404.1	chr8	3354500	3354700	-	1	NA	NA	NA	1185	NM_001033378	319493	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0.015000	0.557214	
mm_164802.1	chr18	23916969	23917169	+	1	NA	NA	NA	-37619	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.045000	0.522388	
mm_130042.1	chr15	89075822	89076022	-	1	NA	NA	NA	-68	NR_040417	69120	Mm.276391	NR_040417	ENSMUSG00000087331	1810021B22Rik	-	RIKEN cDNA 1810021B22 gene	ncRNA	0.120000	0.741294	
mm_78128.1	chr9	20653888	20654088	+	1	NA	NA	NA	1858	NM_023371	23988	Mm.7906	NM_023371	ENSMUSG00000032171	Pin1	0610025L01Rik|D9Bwg1161e	protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1	protein-coding	0.000000	0.437811	
mm_110805.1	chr12	72212420	72212620	-	1	NA	NA	NA	23226	NR_104446	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.025000	0.497512	
mm_17202.1	chr2	25469017	25469217	-	1	NA	NA	NA	632	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.030000	0.616915	
mm_56593.1	chr6	108532536	108532736	-	1	NA	NA	NA	42893	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.025000	0.497512	
mm_111648.1	chr12	102730321	102730521	-	1	NA	NA	NA	13240	NM_001142937	64113	Mm.291222	NM_022323	ENSMUSG00000096458	Moap1	AA987038|Map-1|Pnma4	modulator of apoptosis 1	protein-coding	0.035000	0.537313	
mm_112693.1	chr13	17694822	17695022	+	1	NA	NA	NA	-157	NM_138654	192136	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	0.090000	0.721393	
mm_547.1	chr1	38018975	38019175	+	1	NA	NA	NA	21065	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.025000	0.407960	
mm_167810.1	chr9	123929098	123929298	-	1	NA	NA	NA	39494	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.020000	0.487562	
mm_116186.1	chr13	31079775	31079975	-	1	NA	NA	NA	-105828	NM_025588	66482	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.025000	0.467662	54(CTGCCTATAAGC,-,0.00),56(GCCTATAAGCCC,+,0.00)
mm_142782.1	chr17	50154799	50154999	-	1	NA	NA	NA	35598	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.005000	0.412935	
mm_117551.1	chr13	84064615	84064815	-	1	NA	NA	NA	59	NR_131220	553095	Mm.39702	NR_131220	ENSMUSG00000098087	Gm17750	-	predicted gene, 17750	ncRNA	0.010000	0.388060	
mm_73988.1	chr8	120668190	120668390	+	1	NA	NA	NA	-30	NM_001293559	12857	Mm.386758	NM_009941	ENSMUSG00000031818	Cox4i1	AL024441|COX|COX IV-1|COXIV|Cox4|Cox4a|IV-1	cytochrome c oxidase subunit IV isoform 1	protein-coding	0.135000	0.731343	
mm_170318.1	chr18	37761621	37761821	+	1	NA	NA	NA	-80	NM_033580	93705	Mm.247203	NM_033580	ENSMUSG00000103081	Pcdhgb8	-	protocadherin gamma subfamily B, 8	protein-coding	0.035000	0.457711	
mm_69909.1	chr7	141640011	141640211	-	1	NA	NA	NA	15208	NM_001330001	353328	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0.010000	0.442786	
mm_129329.1	chr15	77775117	77775317	-	1	NA	NA	NA	-19988	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.040000	0.626866	
mm_64039.1	chr7	140772994	140773194	+	1	NA	NA	NA	9262	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.040000	0.507463	
mm_85589.1	chr9	107313275	107313475	-	1	NA	NA	NA	16716	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.025000	0.507463	
mm_124778.1	chr15	7198606	7198806	+	1	NA	NA	NA	58164	NM_013584	16880	Mm.149720	NM_013584	ENSMUSG00000054263	Lifr	A230075M04Rik|AW061234|LIF	leukemia inhibitory factor receptor	protein-coding	0.000000	0.273632	
mm_11613.1	chr2	34589553	34589753	+	1	NA	NA	NA	165579	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.010000	0.363184	
mm_156760.1	chrX	160502569	160502769	+	1	NA	NA	NA	235	NM_001177878	110094	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	0.075000	0.611940	
mm_92482.1	chr10	78295321	78295521	-	1	NA	NA	NA	44786	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.010000	0.616915	
mm_162212.1	chrX	136741178	136741378	-	1	NA	NA	NA	74	NM_001168229	56397	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	0.040000	0.562189	
mm_32509.1	chr4	108479118	108479318	+	1	NA	NA	NA	19792	NM_175472	230594	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.010000	0.358209	
mm_141391.1	chr17	29167352	29167552	-	1	NA	NA	NA	32396	NM_001002786	442827	Mm.440341	NM_001002786	ENSMUSG00000064147	Rab44	9830134C10Rik	RAB44, member RAS oncogene family	protein-coding	0.010000	0.597015	
mm_116602.1	chr13	48625434	48625634	-	1	NA	NA	NA	138	NM_207232	218232	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding	0.160000	0.805970	
mm_16293.1	chr2	174284219	174284419	+	1	NA	NA	NA	-1	NM_019690	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.050000	0.597015	-33(AACTTTATAGGG,-,0.00),-31(CTTTATAGGGCC,+,0.00)
mm_151613.1	chr19	3898958	3899158	-	1	NA	NA	NA	6172	NM_016921	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.030000	0.542289	
mm_104925.1	chr11	99979000	99979200	-	1	NA	NA	NA	7493	NM_001256057	100504183	Mm.426560	NM_001256057	ENSMUSG00000078253	Krtap16-1	Gm11570|OTTMUSG00000002209	keratin associated protein 16-1	protein-coding	0.005000	0.497512	
mm_37868.1	chr4	132348032	132348232	-	1	NA	NA	NA	-2382	NM_133878	100088	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	0.005000	0.383085	-39(TCATTTATAAGG,-,0.00)
mm_101548.1	chr11	33578792	33578992	-	1	NA	NA	NA	65	NM_146017	216643	Mm.99989	NM_146017	ENSMUSG00000020159	Gabrp	-	gamma-aminobutyric acid (GABA) A receptor, pi	protein-coding	0.020000	0.527363	
mm_147674.1	chr18	60648858	60649058	-	1	NA	NA	NA	-14452	NR_045401	328963	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.015000	0.592040	
mm_106048.1	chr11	116080198	116080398	-	1	NA	NA	NA	-2337	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.025000	0.631841	
mm_159199.1	chr2	119758408	119758608	-	1	NA	NA	NA	17	NM_206941	17005	Mm.1740	NM_008523	ENSMUSG00000027297	Ltk	-	leukocyte tyrosine kinase	protein-coding	0.080000	0.741294	
mm_40722.1	chr5	65967264	65967464	+	1	NA	NA	NA	240	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.030000	0.582090	
mm_115084.1	chr13	102693502	102693702	+	1	NA	NA	NA	44	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.015000	0.432836	
mm_72468.1	chr8	83348641	83348841	+	1	NA	NA	NA	269	NM_026233	67555	Mm.84115	NM_026233	ENSMUSG00000035057	Mgat4d	4933434I20Rik|GnT1IP|GnT1IP-L	MGAT4 family, member C	protein-coding	0.060000	0.636816	
mm_49228.1	chr6	15800873	15801073	+	1	NA	NA	NA	80312	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.020000	0.447761	
mm_65608.1	chr7	27465655	27465855	-	1	NA	NA	NA	-8085	NM_133210	170742	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	0.025000	0.522388	
mm_127355.1	chr15	100619886	100620086	+	1	NA	NA	NA	4324	NM_011873	23994	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0.005000	0.492537	
mm_42625.1	chr5	118245230	118245430	+	1	NA	NA	NA	103	NM_001081236	76792	Mm.103428	NM_001081236	ENSMUSG00000032840	2410131K14Rik	-	RIKEN cDNA 2410131K14 gene	protein-coding	0.120000	0.701493	
mm_110041.1	chr12	17176860	17177060	-	1	NA	NA	NA	-72	NM_201531	382571	Mm.40173	NM_201531	ENSMUSG00000051726	Kcnf1	Gm1182|Kv5.1	potassium voltage-gated channel, subfamily F, member 1	protein-coding	0.015000	0.532338	
mm_9807.1	chr1	181928965	181929165	-	1	NA	NA	NA	-86664	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.010000	0.363184	
mm_110976.1	chr12	76982725	76982925	-	1	NA	NA	NA	-20577	NM_001146176	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.000000	0.527363	-36(TTCTCTATAAAG,-,0.00),-34(CTCTATAAAGGA,-,0.00)
mm_91773.1	chr10	51757095	51757295	-	1	NA	NA	NA	-1	NR_045158	71090	Mm.72588	NM_027670	ENSMUSG00000062224	4933411G06Rik	-	Sumo1 pseudogene	pseudo	0.035000	0.517413	
mm_23723.1	chr3	69009884	69010084	+	1	NA	NA	NA	82	NR_029735	723949		NR_029735	ENSMUSG00000065606	Mir16-2	Mirn16-2|mir-16-2	microRNA 16-2	ncRNA	0.010000	0.313433	
mm_156992.1	chrX	7421028	7421228	-	1	NA	NA	NA	-81	NR_027925	68355	Mm.45111	NR_027924		2010204K13Rik	0610010M13Rik|Cip7	RIKEN cDNA 2010204K13 gene	ncRNA	0.015000	0.442786	
mm_4645.1	chr1	180256313	180256513	+	1	NA	NA	NA	-113	NM_001128605	19165	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.060000	0.621891	
mm_79256.1	chr9	50751788	50751988	+	1	NA	NA	NA	466	NM_001164708	69253	Mm.1980	NM_024441	ENSMUSG00000038086	Hspb2	27kDa|2810021G24Rik|HSP27|MKBP	heat shock protein 2	protein-coding	0.020000	0.547264	
mm_53136.1	chr6	125215283	125215483	+	1	NA	NA	NA	-198	NM_009496	22317	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	0.030000	0.502488	-33(CACCATAAAAGG,-,0.00)
mm_77929.1	chr9	7353471	7353671	+	1	NA	NA	NA	6197	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.378109	
mm_168010.1	chrY	15198458	15198658	+	1	NA	NA	NA	684687	NM_001199331	100040022	Mm.485767	NM_001199331	ENSMUSG00000095172	Gm20822	-	predicted gene, 20822	protein-coding	0.000000	0.388060	0(AACCATAAAAAG,-,0.00)
mm_88525.1	chr10	78069233	78069433	+	1	NA	NA	NA	-35	NM_015790	50723	Mm.17819	NM_015790	ENSMUSG00000000732	Icosl	AU044799|B7-H2|B7RP-1|B7h|BG071784|GI50|GL50|GL50-B|ICOS-L|Icoslg|LICOS|Ly115l|mKIAA0653	icos ligand	protein-coding	0.095000	0.696517	
mm_139326.1	chr17	48462282	48462482	+	1	NA	NA	NA	7481	NM_152823	76589	Mm.311629	NM_152823	ENSMUSG00000043592	Unc5cl	2510009H09Rik|BB155270|Zud	unc-5 family C-terminal like	protein-coding	0.050000	0.616915	
mm_63478.1	chr7	127745438	127745638	+	1	NA	NA	NA	-1237	NM_172748	233902	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.045000	0.527363	
mm_122122.1	chr14	31019278	31019478	-	1	NA	NA	NA	240	NM_001081251	66923	Mm.27913	NM_025847	ENSMUSG00000042323	Pbrm1	2610016F04Rik|AI507524|BAF180|Pb1	polybromo 1	protein-coding	0.190000	0.875622	
mm_121521.1	chr14	122106937	122107137	+	1	NA	NA	NA	-45	NM_080556	68059	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	0.135000	0.716418	
mm_133518.1	chr16	90829992	90830192	+	1	NA	NA	NA	-767	NR_133572	70967	Mm.253077	NM_027627	ENSMUSG00000039903	Eva1c	1700092M14Rik|4931408A02Rik|Fam176c	eva-1 homolog C (C. elegans)	protein-coding	0.100000	0.711443	
mm_598.1	chr1	39650505	39650705	+	1	NA	NA	NA	577	NM_170597	263764	Mm.122091	NM_170597	ENSMUSG00000050967	Creg2	A830098L22Rik	cellular repressor of E1A-stimulated genes 2	protein-coding	0.095000	0.716418	
mm_133824.1	chr16	95824788	95824988	+	1	NA	NA	NA	73825	NR_040485	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.005000	0.502488	
mm_21722.1	chr2	164654842	164655042	-	1	NA	NA	NA	24	NM_001160414	629754	Mm.190489	NM_001160414	ENSMUSG00000074594	Wfdc9	OTTMUSG00000001088	WAP four-disulfide core domain 9	protein-coding	0.010000	0.522388	-35(ACCTCTTAAAGG,-,0.00),-34(CCTCTTAAAGGT,+,0.00)
mm_158394.1	chrX	136741005	136741205	-	1	NA	NA	NA	50	NM_001168225	56397	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	0.045000	0.482587	
mm_99104.1	chr11	100118992	100119192	+	1	NA	NA	NA	1485	NM_001313949	16663	Mm.4646	NM_010662	ENSMUSG00000044041	Krt13	CK13|K13|Krt-1.13|Krt1-13	keratin 13	protein-coding	0.010000	0.527363	74(CACTCTAAAAGT,-,0.00)
mm_150914.1	chr19	46064323	46064523	+	1	NA	NA	NA	7884	NM_001081214	226169	Mm.2415	NM_145504	ENSMUSG00000055491	Pprc1	A930018M19|BC013720|PRC|mKIAA0595	peroxisome proliferative activated receptor, gamma, coactivator-related 1	protein-coding	0.000000	0.497512	
mm_16378.1	chr2	178193010	178193210	+	1	NA	NA	NA	26	NM_001007154	74189	Mm.44413	NM_028806	ENSMUSG00000027525	Phactr3	1500003N10Rik|4930415A02Rik|H17739|Scapin1|Scapinin|mKIAA4224	phosphatase and actin regulator 3	protein-coding	0.020000	0.587065	
mm_120806.1	chr14	74922059	74922259	+	1	NA	NA	NA	25718	NM_001252132	380916	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.040000	0.592040	
mm_54970.1	chr6	48737816	48738016	-	1	NA	NA	NA	-1131	NM_175860	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.015000	0.517413	
mm_24888.1	chr3	96108450	96108650	+	1	NA	NA	NA	4023	NM_001025614	229603	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0.015000	0.492537	
mm_20080.1	chr2	120609395	120609595	-	1	NA	NA	NA	13	NR_027510	66606	Mm.428639	NM_025657	ENSMUSG00000027286	Lrrc57	2810002D13Rik|AA407405	leucine rich repeat containing 57	protein-coding	0.080000	0.626866	
mm_128463.1	chr15	50806686	50806886	-	1	NA	NA	NA	82263	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.378109	-90(CTTTTTAGGGCT,+,0.00)
mm_104420.1	chr11	94761081	94761281	-	1	NA	NA	NA	1	NM_001105561	217122	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086|OTTMUSG00000002043	predicted gene 11545	protein-coding	0.005000	0.502488	-35(GACTATTTAAGC,-,0.00)
mm_95374.1	chr11	49088810	49089010	+	1	NA	NA	NA	1893	NM_008330	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.015000	0.398010	
mm_81080.1	chr9	106224000	106224200	+	1	NA	NA	NA	1502	NM_031178	81897	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	0.040000	0.592040	
mm_100829.1	chr11	5401179	5401379	-	1	NA	NA	NA	-19539	NM_001290501	407821	Mm.216313	NM_001080924	ENSMUSG00000041961	Znrf3	Gm1167	zinc and ring finger 3	protein-coding	0.020000	0.402985	
mm_60792.1	chr7	45570257	45570457	+	1	NA	NA	NA	204	NM_009737	12036	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.080000	0.726368	
mm_11614.1	chr2	34608335	34608535	+	1	NA	NA	NA	146797	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.010000	0.467662	
mm_46394.1	chr5	104022100	104022300	-	1	NA	NA	NA	-404	NM_053262	114664	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0.030000	0.562189	
mm_72576.1	chr8	84192175	84192375	+	1	NA	NA	NA	-13314	NR_029821	723819		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	0.040000	0.592040	
mm_74276.1	chr8	125200504	125200704	+	1	NA	NA	NA	146409	NM_174854	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	0.020000	0.502488	
mm_35343.1	chr4	32239895	32240095	-	1	NA	NA	NA	-177440	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.085000	0.656716	
mm_28470.1	chr3	90889028	90889228	-	1	NA	NA	NA	162222	NM_207263	384997	Mm.316644	NM_207263	ENSMUSG00000042250	Pglyrp4	Gm1478|Gm413	peptidoglycan recognition protein 4	protein-coding	0.000000	0.457711	-34(GCCTTTAAATGC,+,0.00),-34(GCCTTTAAATGC,-,0.00)
mm_157444.1	chrX	41796716	41796916	-	1	NA	NA	NA	115085	NM_001033422	331401	Mm.259498	NM_001033422	ENSMUSG00000037475	Thoc2	6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2	THO complex 2	protein-coding	0.000000	0.373134	62(CCTTCTTAAAGG,-,0.00)
mm_135190.1	chr16	36359404	36359604	-	1	NA	NA	NA	8066	NM_001082546	100034684	Mm.383561	NM_001082546	ENSMUSG00000071561	BC100530	-	cDNA sequence BC100530	protein-coding	0.000000	0.388060	
mm_78866.1	chr9	44400429	44400629	+	1	NA	NA	NA	106	NR_106053	102465658		NR_106053	ENSMUSG00000099309	Mir7085	Gm27423|mmu-mir-7085	microRNA 7085	ncRNA	0.015000	0.592040	
mm_8339.1	chr1	150164762	150164962	-	1	NA	NA	NA	86	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.030000	0.452736	7(GGCTTTTAATGA,-,0.00)
mm_82179.1	chr9	123853263	123853463	+	1	NA	NA	NA	-1464	NM_001110253	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.010000	0.447761	-32(CTGTATATAAGC,-,0.00),66(GCCTCTAAATGC,-,0.00)
mm_64865.1	chr7	13278585	13278785	-	1	NA	NA	NA	36	NM_177312	321008	Mm.458832	NM_177312	ENSMUSG00000070814	6330408A02Rik	-	RIKEN cDNA 6330408A02 gene	protein-coding	0.050000	0.631841	-54(GCCTAGAAATGG,-,0.00)
mm_22021.1	chr2	168003398	168003598	-	1	NA	NA	NA	7095	NM_001080708	69553	Mm.68454	NM_001080708	ENSMUSG00000074577	Fam65c	2310033K02Rik|Gm124	family with sequence similarity 65, member C	protein-coding	0.055000	0.686567	
mm_161407.1	chr15	3471515	3471715	-	1	NA	NA	NA	110227	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.000000	0.447761	-69(GCCTCTAAAAAT,-,0.00)
mm_9279.1	chr1	171634350	171634550	-	1	NA	NA	NA	7450	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.000000	0.358209	-42(CCTTTTATATTT,+,0.00),-23(GCCTTTATAGAC,+,0.00),-23(GCCTTTATAGAC,-,0.00)
mm_141918.1	chr17	34999932	35000132	-	1	NA	NA	NA	714	NM_033075	110956	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0.055000	0.527363	-67(GCTTTTAGAAAG,+,0.00)
mm_75702.1	chr8	68735003	68735203	-	1	NA	NA	NA	43	NM_001252623	234356	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	0.070000	0.696517	
mm_33912.1	chr4	136357328	136357528	+	1	NA	NA	NA	46486	NM_001277123	74326	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	0.010000	0.452736	
mm_103325.1	chr11	74457177	74457377	-	1	NA	NA	NA	92606	NM_001011851	258153	Mm.376124	NM_001011851	ENSMUSG00000058275	Olfr412	MOR127-5P	olfactory receptor 412	protein-coding	0.035000	0.552239	
mm_171377.1	chr4	119282746	119282946	-	1	NA	NA	NA	11667	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.020000	0.412935	
mm_157603.1	chrX	53370459	53370659	-	1	NA	NA	NA	0	NM_027409	70380	Mm.491083	NM_027409	ENSMUSG00000023074	Mospd1	1810018L05Rik	motile sperm domain containing 1	protein-coding	0.040000	0.646766	
mm_22127.1	chr2	170357026	170357226	-	1	NA	NA	NA	765	NR_040610	73303	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.035000	0.577114	
mm_7016.1	chr1	86526126	86526326	-	1	NA	NA	NA	-510	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.100000	0.681592	
mm_14850.1	chr2	148440052	148440252	+	1	NA	NA	NA	3383	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.010000	0.383085	
mm_148230.1	chr18	80440721	80440921	-	1	NA	NA	NA	28846	NM_026295	67655	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.015000	0.537313	
mm_153849.1	chr19	46338551	46338751	-	1	NA	NA	NA	9	NM_001164294	67116	Mm.218848	NM_024192	ENSMUSG00000036748	Cuedc2	3010002G01Rik	CUE domain containing 2	protein-coding	0.065000	0.616915	
mm_57335.1	chr6	124742557	124742757	-	1	NA	NA	NA	-1578	NM_013535	14790	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.025000	0.427861	51(CTCTTTAAAAAA,-,0.00)
mm_25858.1	chr3	129797468	129797668	+	1	NA	NA	NA	6462	NM_001287224	242235	Mm.302549	NM_001205102	ENSMUSG00000093865	Lrit3	Gm421	leucine-rich repeat, immunoglobulin-like and transmembrane domains 3	protein-coding	0.010000	0.427861	
mm_41767.1	chr5	103501295	103501495	+	1	NA	NA	NA	76203	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.020000	0.457711	
mm_47262.1	chr5	121836659	121836859	-	1	NA	NA	NA	100	NM_001306128	16923	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.135000	0.751244	
mm_42716.1	chr5	120476430	120476630	+	1	NA	NA	NA	-17	NM_145565	231691	Mm.28685	NM_145565	ENSMUSG00000029597	Sds	4432411H13Rik|SDH	serine dehydratase	protein-coding	0.025000	0.621891	
mm_71952.1	chr8	70498523	70498723	+	1	NA	NA	NA	5492	NM_018827	12931	Mm.335584	NM_018827	ENSMUSG00000007888	Crlf1	CLF-1|CRLM-3|CRLM3|NR6|NR6.1	cytokine receptor-like factor 1	protein-coding	0.020000	0.582090	
mm_147698.1	chr18	60803908	60804108	-	1	NA	NA	NA	159	NM_010545	16149	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	0.015000	0.537313	
mm_24273.1	chr3	89203886	89204086	+	1	NA	NA	NA	1061	NR_122037	14466	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	0.025000	0.507463	-51(CCTCATAAACCC,+,0.00)
mm_124001.1	chr14	75844875	75845075	-	1	NA	NA	NA	-11	NR_045294	100043189	Mm.426329	NR_045294		Gm4285	-	predicted gene 4285	ncRNA	0.125000	0.696517	
mm_140826.1	chr17	23644856	23645056	-	1	NA	NA	NA	313	NM_001033339	240047	Mm.235343	NM_001033339	ENSMUSG00000023903	Mmp25	F730048C11Rik|Leukolysin|MMP20|MT6-MMP	matrix metallopeptidase 25	protein-coding	0.050000	0.651741	
mm_436.1	chr1	34678062	34678262	+	1	NA	NA	NA	-41952	NR_033627	241051	Mm.282827	NR_033627		AA619741	-	PHD finger protein 19 pseudogene	pseudo	0.115000	0.721393	
mm_3353.1	chr1	138164838	138165038	+	1	NA	NA	NA	10188	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.005000	0.368159	
mm_99580.1	chr11	104231386	104231586	+	1	NA	NA	NA	50	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.125000	0.736318	
mm_162548.1	chr1	170959797	170959997	-	1	NA	NA	NA	16174	NM_001077189	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.000000	0.402985	68(AGCTATTTAAGC,-,0.00)
mm_155708.1	chrX	96095898	96096098	+	1	NA	NA	NA	-47	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.095000	0.716418	
mm_107745.1	chr12	58813792	58813992	+	1	NA	NA	NA	198125	NM_009147	20334	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	0.000000	0.417910	
mm_59304.1	chr7	25221343	25221543	+	1	NA	NA	NA	18	NM_175436	210172	Mm.129371	NM_175436	ENSMUSG00000046541	Zfp526	D030024H03Rik|Znf526	zinc finger protein 526	protein-coding	0.065000	0.661692	
mm_6097.1	chr1	63442150	63442350	-	1	NA	NA	NA	-3641	NM_011780	23792	Mm.124892	NM_011780	ENSMUSG00000025964	Adam23	AW046396|MDC3	a disintegrin and metallopeptidase domain 23	protein-coding	0.005000	0.378109	
mm_43314.1	chr5	134945188	134945388	+	1	NA	NA	NA	1646	NM_009903	12740	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	0.020000	0.597015	
mm_17128.1	chr2	24819004	24819204	-	1	NA	NA	NA	-55952	NM_007579	12287	Mm.4424	NM_007579	ENSMUSG00000004113	Cacna1b	AW050276|AW060892|AW822256|BIII|Cav2.2|Cchn1a|alpha(1B)	calcium channel, voltage-dependent, N type, alpha 1B subunit	protein-coding	0.015000	0.323383	
mm_143229.1	chr17	63427964	63428164	-	1	NA	NA	NA	72516	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.000000	0.273632	
mm_60857.1	chr7	45870365	45870565	+	1	NA	NA	NA	-2375	NM_133950	68137	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	0.030000	0.577114	
mm_59745.1	chr7	28818593	28818793	+	1	NA	NA	NA	-6645	NM_016772	51798	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.045000	0.656716	
mm_84628.1	chr9	70691927	70692127	-	1	NA	NA	NA	13045	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.005000	0.383085	
mm_139285.1	chr17	48299859	48300059	+	1	NA	NA	NA	-79	NM_001033405	328833	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0.015000	0.472637	
mm_90247.1	chr10	121496886	121497086	+	1	NA	NA	NA	-20736	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.015000	0.487562	
mm_56994.1	chr6	120933707	120933907	-	1	NA	NA	NA	-16987	NM_007544	12122	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	0.020000	0.417910	
mm_92416.1	chr10	76874389	76874589	-	1	NA	NA	NA	87458	NM_001347216	59093	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding	0.005000	0.502488	
mm_96035.1	chr11	59556218	59556418	+	1	NA	NA	NA	13632	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.025000	0.412935	
mm_167467.1	chr8	126029200	126029400	+	1	NA	NA	NA	34198	NM_008430	16525	Mm.10800	NM_008430	ENSMUSG00000033998	Kcnk1	AI788889|TWIK-1	potassium channel, subfamily K, member 1	protein-coding	0.030000	0.527363	
mm_129723.1	chr15	81960732	81960932	-	1	NA	NA	NA	98	NM_001282040	29858	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	0.125000	0.746269	
mm_75808.1	chr8	70234330	70234530	-	1	NA	NA	NA	-8	NM_133972	76813	Mm.383251	NM_133972	ENSMUSG00000002343	Armc6	2410153K17Rik|AW554412	armadillo repeat containing 6	protein-coding	0.070000	0.601990	
mm_152373.1	chr19	10204302	10204502	-	1	NA	NA	NA	200	NM_026919	69038	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	0.050000	0.547264	
mm_126025.1	chr15	76696636	76696836	+	1	NA	NA	NA	10	NM_182805	76282	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	0.015000	0.626866	-20(CCTTTTCTGCCC,+,0.00)
mm_23139.1	chr3	38885653	38885853	+	1	NA	NA	NA	-1187	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.100000	0.696517	
mm_58972.1	chr7	19004268	19004468	+	1	NA	NA	NA	303	NM_178757	272359	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0.140000	0.786070	
mm_159444.1	chr3	129203736	129203936	+	1	NA	NA	NA	3958	NM_001042504	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.045000	0.582090	
mm_46671.1	chr5	108795263	108795463	-	1	NA	NA	NA	0	NM_026109	67366	Mm.46274	NM_026109	ENSMUSG00000004821	Tmed11	1810008K16Rik	transmembrane p24 trafficking protein 11	protein-coding	0.005000	0.373134	
mm_73318.1	chr8	105225241	105225441	+	1	NA	NA	NA	153	NM_145604	234678	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	0.100000	0.691542	
mm_164541.1	chr17	8283741	8283941	+	1	NA	NA	NA	28	NM_018819	55951	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	0.115000	0.666667	
mm_146725.1	chr18	15064332	15064532	-	1	NA	NA	NA	-850	NM_001142731	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.030000	0.572139	
mm_42357.1	chr5	114911618	114911818	+	1	NA	NA	NA	-11522	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.005000	0.422886	
mm_152022.1	chr19	6044796	6044996	-	1	NA	NA	NA	-1680	NM_028769	74126	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0.035000	0.522388	
mm_167238.1	chr8	19123615	19123815	+	1	NA	NA	NA	-37	NM_183035	360211	Mm.271557	NM_183035	ENSMUSG00000052554	Defb34	BD-34	defensin beta 34	protein-coding	0.015000	0.482587	
mm_136096.1	chr16	85079791	85079991	-	1	NA	NA	NA	93816	NM_001198825	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.065000	0.587065	
mm_85287.1	chr9	99717167	99717367	-	1	NA	NA	NA	0	NM_001194923	56492	Mm.386784	NM_019815	ENSMUSG00000032473	Cldn18	-	claudin 18	protein-coding	0.040000	0.587065	
mm_18388.1	chr2	60125513	60125713	-	1	NA	NA	NA	127	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.055000	0.532338	
mm_18799.1	chr2	73892233	73892433	-	1	NA	NA	NA	306	NM_001284371	11909	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0.115000	0.696517	
mm_19312.1	chr2	90546841	90547041	-	1	NA	NA	NA	33706	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.000000	0.447761	
mm_33928.1	chr4	136880425	136880625	+	1	NA	NA	NA	5652	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.055000	0.562189	
mm_12594.1	chr2	74578944	74579144	+	1	NA	NA	NA	-96	NM_027133	69605	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	0.105000	0.696517	
mm_90881.1	chr10	9782730	9782930	-	1	NA	NA	NA	98108	NR_038036	620417	Mm.378085	NR_038036		Gm6150	-	predicted gene 6150	ncRNA	0.020000	0.283582	
mm_100746.1	chr11	4135256	4135456	-	1	NA	NA	NA	196	NM_027859	71673	Mm.240586	NM_027859	ENSMUSG00000003581	Rnf215	0610009J22Rik|AW557025|C77903	ring finger protein 215	protein-coding	0.130000	0.751244	
mm_76003.1	chr8	72491579	72491779	-	1	NA	NA	NA	935	NM_177766	270066	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	0.025000	0.522388	
mm_14644.1	chr2	136892161	136892361	+	1	NA	NA	NA	-2	NM_028834	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.055000	0.542289	
mm_18651.1	chr2	69722665	69722865	-	1	NA	NA	NA	-323	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.080000	0.606965	39(CCTTTTAAAATA,+,0.00)
mm_38963.1	chr4	150866764	150866964	-	1	NA	NA	NA	11773	NM_133753	74155	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.010000	0.517413	
mm_121350.1	chr14	116925287	116925487	+	1	NA	NA	NA	90	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.060000	0.577114	
mm_61355.1	chr7	68364007	68364207	+	1	NA	NA	NA	-53317	NR_046208	71244	Mm.410787	NR_046208	ENSMUSG00000108924	4933436H12Rik	-	RIKEN cDNA 4933436H12 gene	ncRNA	0.010000	0.378109	
mm_130063.1	chr15	89187342	89187542	-	1	NA	NA	NA	-1905	NR_105923	102465578		NR_105923	ENSMUSG00000098663	Mir6958	Gm27581|mmu-mir-6958	microRNA 6958	ncRNA	0.040000	0.616915	
mm_82027.1	chr9	121898316	121898516	+	1	NA	NA	NA	61	NM_021609	59289	Mm.258105	NM_021609	ENSMUSG00000044534	Ackr2	AI464239|CCR10|CCR9|Ccbp2|Cmkbr9|D6	atypical chemokine receptor 2	protein-coding	0.025000	0.587065	
mm_132882.1	chr16	48790175	48790375	+	1	NA	NA	NA	-18319	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.010000	0.487562	
mm_169122.1	chr13	51817566	51817766	+	1	NA	NA	NA	-23919	NM_013660	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.005000	0.512438	
mm_64480.1	chr7	143064873	143065073	+	1	NA	NA	NA	-4395	NM_020285	56844	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.015000	0.552239	
mm_146554.1	chr18	6223593	6223793	-	1	NA	NA	NA	17831	NM_008448	16573	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.005000	0.368159	
mm_132630.1	chr16	38910013	38910213	+	1	NA	NA	NA	7768	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.005000	0.368159	
mm_73644.1	chr8	110846932	110847132	+	1	NA	NA	NA	8	NM_133973	102339	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	0.065000	0.597015	
mm_43344.1	chr5	135126324	135126524	+	1	NA	NA	NA	19533	NM_021455	58805	Mm.34213	NM_021455	ENSMUSG00000005373	Mlxipl	ChREBP|Mlx|WS-bHLH|Wbscr14|bHLHd14	MLX interacting protein-like	protein-coding	0.015000	0.636816	
mm_88449.1	chr10	77550398	77550598	+	1	NA	NA	NA	20150	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.000000	0.492537	
mm_72257.1	chr8	75096823	75097023	+	1	NA	NA	NA	3305	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.015000	0.542289	
mm_78845.1	chr9	44327490	44327690	+	1	NA	NA	NA	745	NM_007875	13478	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	0.025000	0.562189	
mm_135437.1	chr16	45383119	45383319	-	1	NA	NA	NA	25834	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.025000	0.487562	
mm_169109.1	chr13	44869796	44869996	-	1	NA	NA	NA	132200	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.075000	0.557214	
mm_8585.1	chr1	155973264	155973464	-	1	NA	NA	NA	-109	NM_001039184	74081	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	0.090000	0.666667	
mm_114153.1	chr13	55401000	55401200	+	1	NA	NA	NA	1452	NM_011392	20505	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	0.005000	0.587065	
mm_95025.1	chr11	32024626	32024826	+	1	NA	NA	NA	23449	NM_001290681	18197	Mm.3304	NM_008741	ENSMUSG00000020297	Nsg2	-	neuron specific gene family member 2	protein-coding	0.010000	0.447761	-38(TGGTAGAAAAGG,-,0.00),-17(GTGTTTAAAGGC,-,0.00)
mm_162369.1	chr1	66815940	66816140	-	1	NA	NA	NA	1555	NM_177645	68691	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.035000	0.363184	-77(TGCCTTAAAAGA,-,0.00),-76(GCCTTAAAAGAG,+,0.00)
mm_9600.1	chr1	175492448	175492648	-	1	NA	NA	NA	-3	NM_001347195	24012	Mm.7956	NM_011880	ENSMUSG00000026527	Rgs7	-	regulator of G protein signaling 7	protein-coding	0.145000	0.756219	
mm_160826.1	chr11	36944185	36944385	-	1	NA	NA	NA	-44	NM_011856	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.015000	0.437811	
mm_18053.1	chr2	39196772	39196972	-	1	NA	NA	NA	-6142	NM_178778	320271	Mm.204836	NM_178778	ENSMUSG00000035236	Scai	9330112M16|A930041I02Rik|AI662729	suppressor of cancer cell invasion	protein-coding	0.010000	0.398010	37(TGTTTTAAAAGG,-,0.00),38(GTTTTAAAAGGG,+,0.00),62(TGGTCTAAAGGG,-,0.00)
mm_103945.1	chr11	84066979	84067179	-	1	NA	NA	NA	1278	NM_019819	56405	Mm.240885	NM_019819	ENSMUSG00000018648	Dusp14	1110014C10Rik|2310042C07Rik|D11Ertd395e|MKP-L|Mkp6	dual specificity phosphatase 14	protein-coding	0.045000	0.537313	21(CCTTTTCGAGAG,+,0.00)
mm_72162.1	chr8	72219656	72219856	+	1	NA	NA	NA	26	NM_026455	67922	Mm.28327	NM_026455	ENSMUSG00000003039	Fam32a	2510049I19Rik|AW822030|OTAG-12|Otag12	family with sequence similarity 32, member A	protein-coding	0.075000	0.601990	
mm_84406.1	chr9	65555367	65555567	-	1	NA	NA	NA	24620	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.010000	0.527363	
mm_32083.1	chr4	98395800	98396000	+	1	NA	NA	NA	74	NM_172696	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.125000	0.751244	
mm_78814.1	chr9	44072104	44072304	+	1	NA	NA	NA	2775	NM_016808	53376	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.020000	0.597015	
mm_129834.1	chr15	83149261	83149461	-	1	NA	NA	NA	17	NM_001347082	73826	Mm.23758	NM_178627	ENSMUSG00000041815	Poldip3	1110008P04Rik|AA408269|AL022852|C77954|PDIP46|SKAR|mKIAA1649	polymerase (DNA-directed), delta interacting protein 3	protein-coding	0.120000	0.661692	
mm_167135.1	chr7	127052587	127052787	-	1	NA	NA	NA	-710	NM_026918	69036	Mm.21835	NM_026918	ENSMUSG00000049350	Zg16	1810010M01Rik|AI593689|ZG16p	zymogen granule protein 16	protein-coding	0.000000	0.467662	-3(TGGTATAAAAGC,-,0.00)
mm_28663.1	chr3	95251054	95251254	-	1	NA	NA	NA	39	NM_001168356	171388	Mm.331209	NM_134253	ENSMUSG00000028115	Bnipl	1700128A13Rik|BNIP-S|BNIPL1|BNIPL2|PP73|PP753	BCL2/adenovirus E1B 19kD interacting protein like	protein-coding	0.005000	0.572139	
mm_36221.1	chr4	62519826	62520026	-	1	NA	NA	NA	-17	NM_001276446	17025	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0.125000	0.721393	1(CGCTTTTAGAGC,-,0.00),2(GCTTTTAGAGCG,+,0.00)
mm_4461.1	chr1	172705829	172706029	+	1	NA	NA	NA	7873	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding	0.015000	0.437811	-15(GCTTTAAGGGCT,+,0.00)
mm_94857.1	chr11	24076815	24077015	+	1	NA	NA	NA	-1141	NM_016707	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.050000	0.601990	
mm_149250.1	chr19	10389126	10389326	+	1	NA	NA	NA	136	NM_173068	54525	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0.135000	0.701493	
mm_45919.1	chr5	89441523	89441723	-	1	NA	NA	NA	16275	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.010000	0.393035	
mm_92897.1	chr10	83239263	83239463	-	1	NA	NA	NA	98454	NM_177388	338365	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.015000	0.537313	
mm_131330.1	chr16	13246992	13247192	+	1	NA	NA	NA	-9389	NM_001122667	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.005000	0.492537	
mm_138924.1	chr17	43667425	43667625	+	1	NA	NA	NA	153	NM_018887	56050	Mm.17991	NM_018887	ENSMUSG00000023963	Cyp39a1	mCYP39A1	cytochrome P450, family 39, subfamily a, polypeptide 1	protein-coding	0.040000	0.472637	-35(TTGTTTAAAAAG,-,0.00)
mm_15248.1	chr2	154689561	154689761	+	1	NA	NA	NA	32635	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.040000	0.587065	
mm_34260.1	chr4	141421568	141421768	+	1	NA	NA	NA	889	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.040000	0.626866	1(GGCCTTATAAAG,-,0.00),3(CCTTATAAAGCG,+,0.00)
mm_26050.1	chr3	135689088	135689288	+	1	NA	NA	NA	2359	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.035000	0.512438	
mm_48248.1	chr5	137786594	137786794	-	1	NA	NA	NA	7	NM_144913	231803	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0.070000	0.646766	
mm_52326.1	chr6	108839118	108839318	+	1	NA	NA	NA	10577	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.010000	0.308458	
mm_99240.1	chr11	101078286	101078486	+	1	NA	NA	NA	-25	NM_010475	15485	Mm.188939	NM_010475	ENSMUSG00000019301	Hsd17b1	17HSDB1|17beta-HSD|E2DH|Hsd17ba	hydroxysteroid (17-beta) dehydrogenase 1	protein-coding	0.025000	0.547264	
mm_26837.1	chr3	13933795	13933995	-	1	NA	NA	NA	-12477	NM_001163329	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.010000	0.402985	
mm_116018.1	chr13	24831228	24831428	-	1	NA	NA	NA	161	NM_025790	66834	Mm.2125	NM_025790	ENSMUSG00000006717	Acot13	0610006O17Rik|Them2	acyl-CoA thioesterase 13	protein-coding	0.060000	0.517413	
mm_31133.1	chr4	43249372	43249572	+	1	NA	NA	NA	-17687	NM_177195	320571	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	0.015000	0.472637	
mm_136342.1	chr16	92603125	92603325	-	1	NA	NA	NA	94104	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.020000	0.457711	
mm_6601.1	chr1	75317326	75317526	-	1	NA	NA	NA	211	NM_001110831	13437	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	0.110000	0.746269	
mm_142066.1	chr17	35685326	35685526	-	1	NA	NA	NA	-11683	NM_010364	14885	Mm.10182	NM_010364	ENSMUSG00000001524	Gtf2h4	AW545633|BTF2 p52|p52	general transcription factor II H, polypeptide 4	protein-coding	0.055000	0.656716	
mm_76743.1	chr8	95202942	95203142	-	1	NA	NA	NA	-60502	NM_001145831	16582	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.020000	0.477612	
mm_141625.1	chr17	32916920	32917120	-	1	NA	NA	NA	67	NM_022434	64385	Mm.486449	NM_022434	ENSMUSG00000024292	Cyp4f14	1300014O15Rik|cyp4f-14	cytochrome P450, family 4, subfamily f, polypeptide 14	protein-coding	0.005000	0.477612	
mm_94477.1	chr11	6560133	6560333	+	1	NA	NA	NA	50	NM_001190344	216527	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0.005000	0.417910	
mm_119038.1	chr14	30565435	30565635	+	1	NA	NA	NA	-6614	NR_037237	100526475		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0.040000	0.592040	
mm_105138.1	chr11	101459429	101459629	-	1	NA	NA	NA	6670	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.020000	0.507463	
mm_113946.1	chr13	50417764	50417964	+	1	NA	NA	NA	-13	NM_175401	109082	Mm.18638	NM_175401	ENSMUSG00000037816	Fbxw17	1110064L07Rik|C85886	F-box and WD-40 domain protein 17	protein-coding	0.070000	0.641791	
mm_22991.1	chr3	34019776	34019976	+	1	NA	NA	NA	-203	NM_001113189	14359	Mm.259021	NM_008053	ENSMUSG00000027680	Fxr1	1110050J02Rik|9530073J07Rik|AI851072|Fxr1h|Fxr1p	fragile X mental retardation gene 1, autosomal homolog	protein-coding	0.175000	0.796020	
mm_171932.1	chr5	6407888	6408088	-	1	NA	NA	NA	-658671	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.010000	0.497512	66(TCCTTTATAAAG,-,0.00),68(CTTTATAAAGTG,+,0.00)
mm_86499.1	chr10	6788737	6788937	+	1	NA	NA	NA	261	NM_001039652	18390	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0.040000	0.587065	
mm_59095.1	chr7	19696786	19696986	+	1	NA	NA	NA	1512	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.090000	0.636816	
mm_131197.1	chr16	8513385	8513585	+	1	NA	NA	NA	56	NM_172961	268860	Mm.259315	NM_172961	ENSMUSG00000057880	Abat	9630038C02Rik|AI255750|ENSMUSG00000051226|Gabaat|Gabat|Gm9851|I54|Laibat|X61497	4-aminobutyrate aminotransferase	protein-coding	0.085000	0.671642	
mm_59731.1	chr7	28808714	28808914	+	1	NA	NA	NA	-2076	NM_177301	15388	Mm.9043	NM_177301	ENSMUSG00000015165	Hnrnpl	C79783|D830027H13Rik|Hnrpl	heterogeneous nuclear ribonucleoprotein L	protein-coding	0.060000	0.651741	-46(GTCCCTTTAAGG,-,0.00),-44(CCCTTTAAGGTC,+,0.00),-43(CCTTTAAGGTCC,+,0.00)
mm_23629.1	chr3	66219847	66220047	+	1	NA	NA	NA	60	NM_008987	19288	Mm.276776	NM_008987	ENSMUSG00000027832	Ptx3	AI607804|TSG-14	pentraxin related gene	protein-coding	0.050000	0.572139	
mm_421.1	chr1	34439783	34439983	+	1	NA	NA	NA	54	NM_178601	27993	Mm.289667	NM_178601	ENSMUSG00000026127	Imp4	AA409888|AV031295|D1Wsu40e	IMP4, U3 small nucleolar ribonucleoprotein	protein-coding	0.050000	0.552239	-54(GCCTCTAAAGGC,-,0.00),-53(CCTCTAAAGGCC,+,0.00)
mm_91373.1	chr10	29699281	29699481	-	1	NA	NA	NA	-163514	NM_028351	72780	Mm.45191	NM_028351	ENSMUSG00000019880	Rspo3	2810459H04Rik|AW742308|Cristin1|Thsd2	R-spondin 3	protein-coding	0.060000	0.502488	
mm_171952.1	chr5	77409542	77409742	+	1	NA	NA	NA	-1597	NM_008048	29817	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	0.015000	0.507463	
mm_117638.1	chr13	92483869	92484069	-	1	NA	NA	NA	62	NM_001163627	73942	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	0.045000	0.572139	
mm_117437.1	chr13	74725360	74725560	-	1	NA	NA	NA	8801	NM_001301158	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.005000	0.432836	
mm_120197.1	chr14	61607357	61607557	+	1	NA	NA	NA	0	NM_206974	328424	Mm.224464	NM_206974	ENSMUSG00000046168	Kcnrg	Clld4|E030012H22Rik|Gm745	potassium channel regulator	protein-coding	0.010000	0.432836	
mm_41891.1	chr5	105499521	105499721	+	1	NA	NA	NA	-19850	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.005000	0.527363	
mm_62434.1	chr7	101361962	101362162	+	1	NA	NA	NA	13993	NM_001040111	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.015000	0.562189	
mm_137389.1	chr17	25814045	25814245	+	1	NA	NA	NA	5060	NM_001164225	214931	Mm.152289	NM_001164225	ENSMUSG00000025738	Fbxl16	BC042620|Scirr1	F-box and leucine-rich repeat protein 16	protein-coding	0.000000	0.368159	
mm_81027.1	chr9	104566671	104566871	+	1	NA	NA	NA	-3017	NM_028719	74020	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	0.015000	0.532338	
mm_33490.1	chr4	130823224	130823424	+	1	NA	NA	NA	30787	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.010000	0.611940	
mm_1410.1	chr1	67154230	67154430	+	1	NA	NA	NA	31303	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.000000	0.308458	
mm_55409.1	chr6	63030915	63031115	-	1	NA	NA	NA	-225842	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.010000	0.442786	
mm_108858.1	chr12	98754909	98755109	+	1	NA	NA	NA	8041	NM_029334	75553	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.000000	0.323383	
mm_89295.1	chr10	87913533	87913733	+	1	NA	NA	NA	52522	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.010000	0.497512	
mm_125477.1	chr15	54571249	54571449	+	1	NA	NA	NA	-17	NM_178920	105853	Mm.410994	NM_178920	ENSMUSG00000024479	Mal2	AI461653	mal, T cell differentiation protein 2	protein-coding	0.125000	0.751244	
mm_149908.1	chr19	25610835	25611035	+	1	NA	NA	NA	398	NM_177360	240590	Mm.62785	NM_177360	ENSMUSG00000042372	Dmrt3	-	doublesex and mab-3 related transcription factor 3	protein-coding	0.115000	0.711443	
mm_87140.1	chr10	34456388	34456588	+	1	NA	NA	NA	-26912	NM_001159544	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.010000	0.363184	
mm_54648.1	chr6	38876212	38876412	-	1	NA	NA	NA	-122	NM_001294143	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.175000	0.820896	
mm_105522.1	chr11	106300305	106300505	-	1	NA	NA	NA	1491	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.050000	0.597015	
mm_53648.1	chr6	140651000	140651200	+	1	NA	NA	NA	24215	NM_001309436	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.015000	0.457711	52(GCCCTTAAAAAC,-,0.00),54(CCTTAAAAACAC,+,0.00)
mm_25393.1	chr3	107218595	107218795	+	1	NA	NA	NA	3037	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.030000	0.532338	
mm_116840.1	chr13	54688155	54688355	-	1	NA	NA	NA	-55	NM_001146027	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.065000	0.562189	31(CTGTTTAAAGGC,-,0.00)
mm_37431.1	chr4	122933848	122934048	-	1	NA	NA	NA	27240	NM_029662	76574	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.000000	0.427861	88(GTCTTTTAAAAA,-,0.00),89(TCTTTTAAAAAC,+,0.00)
mm_129890.1	chr15	83510784	83510984	-	1	NA	NA	NA	23	NM_178869	319953	Mm.235007	NM_178869	ENSMUSG00000022442	Ttll1	6330444E16Rik|AV014541	tubulin tyrosine ligase-like 1	protein-coding	0.105000	0.636816	
mm_143000.1	chr17	56417252	56417452	-	1	NA	NA	NA	1557	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0.055000	0.597015	
mm_143354.1	chr17	67143508	67143708	-	1	NA	NA	NA	-117373	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.000000	0.388060	
mm_131889.1	chr16	23226023	23226223	+	1	NA	NA	NA	102	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.035000	0.552239	
mm_72746.1	chr8	85090835	85091035	+	1	NA	NA	NA	7666	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.030000	0.567164	
mm_96687.1	chr11	69587414	69587614	+	1	NA	NA	NA	7155	NM_001127233	22059	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.010000	0.592040	
mm_137127.1	chr17	22876366	22876566	+	1	NA	NA	NA	-9332	NM_001110254	240041	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	0.020000	0.562189	
mm_150065.1	chr19	29386244	29386444	+	1	NA	NA	NA	18906	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.020000	0.388060	
mm_110961.1	chr12	76818292	76818492	-	1	NA	NA	NA	-18	NM_001347406	104886	Mm.172847	NM_134050	ENSMUSG00000021062	Rab15	2310012G06Rik|AI840042	RAB15, member RAS oncogene family	protein-coding	0.010000	0.562189	
mm_156001.1	chrX	106187914	106188114	+	1	NA	NA	NA	914	NM_008828	18655	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding	0.030000	0.587065	
mm_142906.1	chr17	52312112	52312312	-	1	NA	NA	NA	-290497	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.000000	0.427861	
mm_145772.1	chr18	65025833	65026033	+	1	NA	NA	NA	2406	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.030000	0.567164	
mm_120804.1	chr14	74922028	74922228	+	1	NA	NA	NA	25749	NM_001252132	380916	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.040000	0.601990	
mm_119744.1	chr14	54122139	54122339	+	1	NA	NA	NA	131690	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.025000	0.537313	
mm_55065.1	chr6	49050386	49050586	-	1	NA	NA	NA	13968	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.010000	0.442786	
mm_65571.1	chr7	27189379	27189579	-	1	NA	NA	NA	6281	NM_001046637	53607	Mm.386890	NM_015782	ENSMUSG00000061479	Snrpa	C430021M15Rik|Rnu1a-1|Rnu1a1|U1-A|U1A	small nuclear ribonucleoprotein polypeptide A	protein-coding	0.025000	0.636816	
mm_58296.1	chr6	145865334	145865534	-	1	NA	NA	NA	-14	NM_024469	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.095000	0.646766	
mm_67180.1	chr7	73686498	73686698	-	1	NA	NA	NA	-35	NR_033604	244061	Mm.484605	NR_033604	ENSMUSG00000108337	Gm4971	EG244061	Smad nuclear interacting protein 1 pseudogene	pseudo	0.030000	0.577114	
mm_20540.1	chr2	131056496	131056696	-	1	NA	NA	NA	7218	NR_136922	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.015000	0.542289	
mm_105223.1	chr11	102230007	102230207	-	1	NA	NA	NA	43	NR_106179	102465892		NR_106179	ENSMUSG00000098863	Mir8101	Gm27705|mmu-mir-8101	microRNA 8101	ncRNA	0.135000	0.696517	
mm_98403.1	chr11	94328129	94328329	+	1	NA	NA	NA	228	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.130000	0.800995	
mm_31489.1	chr4	52900514	52900714	+	1	NA	NA	NA	11178	NM_146839	258836	Mm.331617	NM_146839	ENSMUSG00000051593	Olfr272	MOR262-7	olfactory receptor 272	protein-coding	0.025000	0.467662	
mm_53690.1	chr6	142537070	142537270	+	1	NA	NA	NA	-29213	NM_001302765	16832	Mm.9745	NM_008492	ENSMUSG00000030246	Ldhb	AI790582|H-Ldh|LDH-B|LDH-H|Ldh-2|Ldh2	lactate dehydrogenase B	protein-coding	0.005000	0.537313	
mm_131075.1	chr16	4726187	4726387	+	1	NA	NA	NA	-74	NM_001136066	15369	Mm.272866	NM_010443	ENSMUSG00000004070	Hmox2	HO-2|HO2	heme oxygenase 2	protein-coding	0.075000	0.631841	
mm_50560.1	chr6	49047808	49048008	+	1	NA	NA	NA	11390	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.025000	0.507463	
mm_81178.1	chr9	107335648	107335848	+	1	NA	NA	NA	2602	NM_133984	69536	Mm.259467	NM_133984	ENSMUSG00000032579	Hemk1	2310008M14Rik|AW049265	HemK methyltransferase family member 1	protein-coding	0.000000	0.537313	
mm_64579.1	chr7	145216159	145216359	+	1	NA	NA	NA	-8140	NR_033626	100040049	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.005000	0.492537	
mm_160312.1	chr7	141338699	141338899	-	1	NA	NA	NA	-16	NM_001282073	54006	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	deformed epidermal autoregulatory factor 1 (Drosophila)	protein-coding	0.040000	0.686567	
mm_34890.1	chr4	155601797	155601997	+	1	NA	NA	NA	481	NM_177186	320541	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	0.065000	0.651741	
mm_60870.1	chr7	45942139	45942339	+	1	NA	NA	NA	13841	NM_001033243	211535	Mm.227539	NM_001033243	ENSMUSG00000040189	Ccdc114	-	coiled-coil domain containing 114	protein-coding	0.030000	0.592040	
mm_173245.1	chrX	89422415	89422615	+	1	NA	NA	NA	-12826	NM_008821	18630	Mm.3086	NM_008821	ENSMUSG00000035395	Pet2	PC231|PC326|Pex3	plasmacytoma expressed transcript 2	protein-coding	0.065000	0.621891	
mm_19512.1	chr2	93957002	93957202	-	1	NA	NA	NA	-2	NM_001145034	620695	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2|OTTMUSG00000014994	predicted gene 13889	protein-coding	0.130000	0.691542	-33(CGCTTTAAATGG,-,0.00),21(GGCTATATAAGC,-,0.00)
mm_77942.1	chr9	7357731	7357931	+	1	NA	NA	NA	10457	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.442786	
mm_120995.1	chr14	79426366	79426566	+	1	NA	NA	NA	-45	NM_001024135	211255	Mm.284526	NM_001024135	ENSMUSG00000043881	Kbtbd7	1110008P08Rik|AU045792|Gm295	kelch repeat and BTB (POZ) domain containing 7	protein-coding	0.095000	0.631841	
mm_169706.1	chr15	75155231	75155431	+	1	NA	NA	NA	70	NM_001310438	546644		NM_008531	ENSMUSG00000022582	Ly6g	Gr-1|Gr1|Ly-6G	lymphocyte antigen 6 complex, locus G	protein-coding	0.000000	0.522388	
mm_164437.1	chr16	48874265	48874465	-	1	NA	NA	NA	1757	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.015000	0.462687	
mm_83181.1	chr9	40984367	40984567	-	1	NA	NA	NA	20161	NM_001281954	54698	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	0.010000	0.497512	
mm_50721.1	chr6	52229917	52230117	+	1	NA	NA	NA	148	NR_029912	723820		NR_029912	ENSMUSG00000065443	Mir196b	Mirn196b|mir-196b	microRNA 196b	ncRNA	0.060000	0.626866	
mm_16549.1	chr2	181766921	181767121	+	1	NA	NA	NA	-8	NM_008665	17932	Mm.458718	NM_008665	ENSMUSG00000010505	Myt1	Nzf2|Nzf2a|Nzf2b|Nztf2	myelin transcription factor 1	protein-coding	0.025000	0.462687	
mm_120943.1	chr14	76677484	76677684	+	1	NA	NA	NA	16	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.010000	0.472637	
mm_117065.1	chr13	58762209	58762409	-	1	NA	NA	NA	2	NR_045469	67585	Mm.84751	NR_045469		4930455J16Rik	-	RIKEN cDNA 4930455J16 gene	ncRNA	0.020000	0.482587	
mm_78223.1	chr9	21587211	21587411	+	1	NA	NA	NA	-5411	NM_178619	69773	Mm.39704	NM_178619	ENSMUSG00000048429	Timm29	1810026J23Rik	translocase of inner mitochondrial membrane 29	protein-coding	0.020000	0.577114	
mm_52242.1	chr6	105677591	105677791	+	1	NA	NA	NA	-54	NM_001109749	269784	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding	0.060000	0.666667	
mm_172038.1	chr6	126740483	126740683	+	1	NA	NA	NA	91	NM_013568	16494	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	0.050000	0.661692	
mm_158911.1	chr1	42696972	42697172	+	1	NA	NA	NA	-74	NM_008900	18993	Mm.440553	NM_008900	ENSMUSG00000045515	Pou3f3	Brn-1|Brn1|Otf8|Skin1	POU domain, class 3, transcription factor 3	protein-coding	0.160000	0.845771	
mm_129075.1	chr15	75748220	75748420	-	1	NA	NA	NA	-398	NM_194350	378435	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	0.135000	0.805970	-37(GTCTCTATAAAG,-,0.00),-35(CTCTATAAAGGC,+,0.00),-35(CTCTATAAAGGC,-,0.00)
mm_115141.1	chr13	104816486	104816686	+	1	NA	NA	NA	367	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.030000	0.512438	
mm_166528.1	chr6	28522128	28522328	+	1	NA	NA	NA	41880	NM_019776	56463	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.015000	0.487562	
mm_58208.1	chr6	143946973	143947173	-	1	NA	NA	NA	33	NM_001347506	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.015000	0.437811	
mm_30496.1	chr3	157533986	157534186	-	1	NA	NA	NA	-311	NM_017381	53861	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding	0.110000	0.671642	
mm_42833.1	chr5	122102602	122102802	+	1	NA	NA	NA	1722	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.010000	0.562189	
mm_75372.1	chr8	45310183	45310383	-	1	NA	NA	NA	-15448	NM_008455	16621	Mm.482691	NM_008455	ENSMUSG00000109764	Klkb1	APS|Kal-3|Kal3|Klk3|PSA	kallikrein B, plasma 1	protein-coding	0.020000	0.457711	
mm_122709.1	chr14	52197335	52197535	-	1	NA	NA	NA	-196	NM_033618	114741	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	0.115000	0.691542	
mm_98310.1	chr11	90034655	90034855	+	1	NA	NA	NA	4407	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.020000	0.502488	31(CCATTTATGCAC,+,0.00)
mm_143862.1	chr17	84186272	84186472	-	1	NA	NA	NA	1575	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.115000	0.716418	
mm_938.1	chr1	56018874	56019074	+	1	NA	NA	NA	-4	NR_126075	69356	Mm.393775	NR_126075	ENSMUSG00000100372	1700003I22Rik	-	RIKEN cDNA 1700003I22 gene	ncRNA	0.035000	0.467662	
mm_85164.1	chr9	96364341	96364541	-	1	NA	NA	NA	-142	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.130000	0.776119	
mm_7356.1	chr1	106664171	106664371	-	1	NA	NA	NA	50019	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.000000	0.343284	-56(ATCTTTTAAAGG,-,0.00),-55(TCTTTTAAAGGG,+,0.00),-54(CTTTTAAAGGGA,+,0.00)
mm_81846.1	chr9	118557935	118558135	+	1	NA	NA	NA	-48674	NM_133721	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.030000	0.537313	
mm_153819.1	chr19	46267612	46267812	-	1	NA	NA	NA	-37025	NM_001177369	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.010000	0.512438	
mm_72958.1	chr8	92826166	92826366	+	1	NA	NA	NA	-1031	NM_008610	17390	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	0.005000	0.597015	
mm_81691.1	chr9	111151996	111152196	+	1	NA	NA	NA	33985	NM_001164838	71268	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.010000	0.417910	
mm_149107.1	chr19	8953741	8953941	+	1	NA	NA	NA	9	NM_197993	70044	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	0.075000	0.502488	
mm_21694.1	chr2	164473622	164473822	-	1	NA	NA	NA	2	NM_001271575	73603	Mm.472883	NM_001271575	ENSMUSG00000017720	Trp53tg5	1700126L10Rik	transformation related protein 53 target 5	protein-coding	0.025000	0.582090	
mm_146626.1	chr18	10181921	10182121	-	1	NA	NA	NA	-229	NM_009071	19877	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.100000	0.671642	
mm_19796.1	chr2	110032276	110032476	-	1	NA	NA	NA	14559	NM_026613	68201	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	0.015000	0.333333	
mm_20997.1	chr2	152332339	152332539	-	1	NA	NA	NA	-14	NM_001083921	24105	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0.095000	0.676617	
mm_64180.1	chr7	141459305	141459505	+	1	NA	NA	NA	-1689	NM_001025103	213573	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.025000	0.601990	
mm_123114.1	chr14	55900112	55900312	-	1	NA	NA	NA	20	NM_001082975	654795	Mm.486218	NM_001082975	ENSMUSG00000022223	Sdr39u1	2310014G06Rik	short chain dehydrogenase/reductase family 39U, member 1	protein-coding	0.075000	0.631841	
mm_35564.1	chr4	41640019	41640219	-	1	NA	NA	NA	183	NM_027147	69638	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.160000	0.820896	
mm_46038.1	chr5	91962628	91962828	-	1	NA	NA	NA	-154	NR_028429	381650	Mm.159453	NR_028429	ENSMUSG00000102644	Thap6	4930534K21Rik|AI448650	THAP domain containing 6	pseudo	0.075000	0.661692	
mm_166050.1	chr4	131572823	131573023	+	1	NA	NA	NA	265355	NM_011214	19273	Mm.4860	NM_011214	ENSMUSG00000028909	Ptpru	Ftp-1|PCP-2|PTP|PTP-lambda|PTPlambda|Pcp2|Ptpf|Ptprl|R-PTP-U|R-PTP-psi|RPTPlambda	protein tyrosine phosphatase, receptor type, U	protein-coding	0.015000	0.482587	
mm_158489.1	chrX	142326670	142326870	-	1	NA	NA	NA	-20572	NM_021487	66240	Mm.58507	NM_021487	ENSMUSG00000090122	Kcne1l	1500015C14Rik|Kcne5|Mink	potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	protein-coding	0.005000	0.358209	
mm_147086.1	chr18	35629765	35629965	-	1	NA	NA	NA	-2638	NM_011397	20522	Mm.22702	NM_011397	ENSMUSG00000024354	Slc23a1	D18Ucla2|SVCT1|Slc23a2|YSPL3	solute carrier family 23 (nucleobase transporters), member 1	protein-coding	0.030000	0.606965	
mm_28054.1	chr3	84191088	84191288	-	1	NA	NA	NA	16550	NR_036654	624713	Mm.442604	NR_036654		Gm6525	EG624713	ribosomal protein L36a pseudogene	pseudo	0.050000	0.601990	
mm_121741.1	chr14	18665048	18665248	-	1	NA	NA	NA	228479	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0.005000	0.507463	-80(GCTTTAAGGGGG,+,0.00),-11(GGCCCTAAAAGA,-,0.00)
mm_33289.1	chr4	128883945	128884145	+	1	NA	NA	NA	-95	NM_178110	67525	Mm.30653	NM_178110	ENSMUSG00000041000	Trim62	6330414G21Rik|AI450348|Dear1	tripartite motif-containing 62	protein-coding	0.145000	0.791045	
mm_70556.1	chr8	13060905	13061105	+	1	NA	NA	NA	97	NM_025834	66901	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.015000	0.597015	
mm_95935.1	chr11	58382190	58382390	+	1	NA	NA	NA	1644	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.030000	0.542289	
mm_38357.1	chr4	137861999	137862199	-	1	NA	NA	NA	-138	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.075000	0.651741	
mm_116973.1	chr13	56178781	56178981	-	1	NA	NA	NA	4	NM_145976	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.025000	0.552239	
mm_82592.1	chr9	21239168	21239368	-	1	NA	NA	NA	64	NM_016679	50868	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.100000	0.756219	
mm_108537.1	chr12	84236481	84236681	+	1	NA	NA	NA	-17700	NM_001163501	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.015000	0.512438	
mm_63048.1	chr7	121739303	121739503	+	1	NA	NA	NA	4924	NM_011326	20278	Mm.35247	NM_011326	ENSMUSG00000000216	Scnn1g	SCNEG	sodium channel, nonvoltage-gated 1 gamma	protein-coding	0.000000	0.353234	
mm_52577.1	chr6	116358865	116359065	+	1	NA	NA	NA	20943	NM_027920	71779	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	0.005000	0.437811	45(TGCTTTTTAAAG,-,0.00),47(CTTTTTAAAGAT,+,0.00)
mm_77597.1	chr8	123892294	123892494	-	1	NA	NA	NA	2381	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.055000	0.597015	
mm_92056.1	chr10	62507137	62507337	-	1	NA	NA	NA	518	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.010000	0.442786	
mm_153876.1	chr19	46864157	46864357	-	1	NA	NA	NA	98094	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.025000	0.512438	
mm_75435.1	chr8	47289337	47289537	-	1	NA	NA	NA	-35	NM_001114311	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.115000	0.731343	
mm_119097.1	chr14	30895374	30895574	+	1	NA	NA	NA	8998	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.030000	0.532338	
mm_159891.1	chr6	29179554	29179754	-	1	NA	NA	NA	-70	NM_001101443	101359	Mm.22818	NM_001101443	ENSMUSG00000079654	Prrt4	AW455481|D330027H18Rik	proline-rich transmembrane protein 4	protein-coding	0.080000	0.616915	
mm_4970.1	chr1	191281400	191281600	+	1	NA	NA	NA	36618	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.015000	0.557214	
mm_29347.1	chr3	108284518	108284718	-	1	NA	NA	NA	554	NM_019972	20661	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0.100000	0.671642	
mm_151703.1	chr19	4498305	4498505	-	1	NA	NA	NA	178	NM_027237	69861	Mm.282978	NM_027237	ENSMUSG00000042041	2010003K11Rik	-	RIKEN cDNA 2010003K11 gene	protein-coding	0.040000	0.641791	
mm_114552.1	chr13	74009372	74009572	+	1	NA	NA	NA	53	NM_182839	72948	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0.125000	0.736318	
mm_24688.1	chr3	94974838	94975038	+	1	NA	NA	NA	207	NM_001293716	107650	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase, catalytic, beta polypeptide	protein-coding	0.105000	0.701493	
mm_34098.1	chr4	138967020	138967220	+	1	NA	NA	NA	8	NM_025786	66825	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	0.025000	0.487562	
mm_2642.1	chr1	125174829	125175029	+	1	NA	NA	NA	260798	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.040000	0.597015	
mm_149989.1	chr19	29251797	29251997	+	1	NA	NA	NA	94	NM_008413	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.165000	0.840796	
mm_24528.1	chr3	93277452	93277652	+	1	NA	NA	NA	-42197	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.005000	0.328358	
mm_165094.1	chr19	53903256	53903456	+	1	NA	NA	NA	5	NM_001168491	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.130000	0.696517	
mm_39173.1	chr4	155735882	155736082	-	1	NA	NA	NA	1178	NM_001101506	381582	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	0.010000	0.572139	
mm_145347.1	chr18	56470989	56471189	+	1	NA	NA	NA	38957	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.020000	0.482587	
mm_25058.1	chr3	98852461	98852661	+	1	NA	NA	NA	7233	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.000000	0.502488	
mm_22107.1	chr2	169970481	169970681	-	1	NA	NA	NA	-7394	NR_131974	446211	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0.025000	0.482587	
mm_119846.1	chr14	54440573	54440773	+	1	NA	NA	NA	9075	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.040000	0.621891	
mm_114530.1	chr13	73603861	73604061	+	1	NA	NA	NA	-41	NM_146047	218335	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	0.140000	0.701493	
mm_90021.1	chr10	115384886	115385086	+	1	NA	NA	NA	27	NM_001033261	216345	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0.115000	0.681592	
mm_173297.1	chrY	43043759	43043959	-	1	NA	NA	NA	113536	NR_038299	100041346	Mm.426191	NR_038299	ENSMUSG00000101005	Gm20871	-	Sycp3 like Y-linked pseudogene	pseudo	0.070000	0.547264	-32(CCCTATAAAAAG,-,0.00)
mm_29483.1	chr3	115713700	115713900	-	1	NA	NA	NA	1255	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.045000	0.512438	
mm_63586.1	chr7	128131402	128131602	+	1	NA	NA	NA	1934	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.010000	0.507463	
mm_170388.1	chr18	60439296	60439496	+	1	NA	NA	NA	62587	NM_134133	106878	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.000000	0.497512	
mm_132690.1	chr16	43235831	43236031	+	1	NA	NA	NA	-11353	NM_181058	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.030000	0.388060	
mm_24008.1	chr3	87376303	87376503	+	1	NA	NA	NA	16	NM_001136236	229499	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	0.015000	0.467662	
mm_37366.1	chr4	120825089	120825289	-	1	NA	NA	NA	552	NM_001277095	18046	Mm.435590	NM_008692	ENSMUSG00000032897	Nfyc	-	nuclear transcription factor-Y gamma	protein-coding	0.100000	0.711443	
mm_54488.1	chr6	35325923	35326123	-	1	NA	NA	NA	118	NM_173375	208164	Mm.257766	NM_173375	ENSMUSG00000047420	Fam180a	B230314O19	family with sequence similarity 180, member A	protein-coding	0.015000	0.562189	-9(CCTTATAGACAA,+,0.00)
mm_22866.1	chr3	28781260	28781460	+	1	NA	NA	NA	49	NM_177586	208691	Mm.193670	NM_177586	ENSMUSG00000050192	Eif5a2	9630038B20|eIF5AII	eukaryotic translation initiation factor 5A2	protein-coding	0.150000	0.830846	
mm_54725.1	chr6	40577327	40577527	-	1	NA	NA	NA	6039	NM_146383	258381	Mm.377469	NM_146383	ENSMUSG00000045514	Olfr460	MOR120-2	olfactory receptor 460	protein-coding	0.010000	0.432836	
mm_71274.1	chr8	40919490	40919690	+	1	NA	NA	NA	-6643	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.010000	0.452736	
mm_85112.1	chr9	95407107	95407307	-	1	NA	NA	NA	63	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.115000	0.726368	
mm_37181.1	chr4	117277563	117277763	-	1	NA	NA	NA	11792	NM_001310730	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.035000	0.592040	60(TTCTCTAAATGG,-,0.00)
mm_82221.1	chr9	3022813	3023013	-	1	NA	NA	NA	15830	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.010000	0.363184	
mm_155127.1	chrX	48967881	48968081	+	1	NA	NA	NA	-90268	NM_001085499	209005	Mm.336054	NM_001085499	ENSMUSG00000079606	Gm595	-	predicted gene 595	protein-coding	0.060000	0.532338	
mm_26336.1	chr3	142546886	142547086	+	1	NA	NA	NA	-13066	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.010000	0.402985	
mm_160436.1	chr8	94268565	94268765	+	1	NA	NA	NA	54064	NM_172410	71805	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0.010000	0.462687	
mm_117183.1	chr13	63431646	63431846	-	1	NA	NA	NA	-1	NM_001282942	14088	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	0.115000	0.626866	
mm_97291.1	chr11	76217574	76217774	+	1	NA	NA	NA	61	NM_021294	13168	Mm.347413	NM_021294	ENSMUSG00000038057	Dbil5	ELP	diazepam binding inhibitor-like 5	protein-coding	0.080000	0.626866	
mm_100574.1	chr11	120765192	120765392	+	1	NA	NA	NA	18912	NM_009053	19719	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.000000	0.567164	
mm_40831.1	chr5	72914268	72914468	+	1	NA	NA	NA	6	NM_153567	75991	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0.135000	0.751244	
mm_52455.1	chr6	113690662	113690862	+	1	NA	NA	NA	-6288	NM_001347356	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.030000	0.611940	
mm_8528.1	chr1	154884407	154884607	-	1	NA	NA	NA	-158587	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.045000	0.552239	
mm_35933.1	chr4	53032388	53032588	-	1	NA	NA	NA	20608	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.015000	0.452736	
mm_34821.1	chr4	154961308	154961508	+	1	NA	NA	NA	485	NM_010419	15208	Mm.137268	NM_010419	ENSMUSG00000048001	Hes5	bHLHb38	hairy and enhancer of split 5 (Drosophila)	protein-coding	0.115000	0.731343	
mm_162104.1	chrX	38772637	38772837	+	1	NA	NA	NA	-43	NM_183126	77883	Mm.113311	NM_183126	ENSMUSG00000051361	6030498E09Rik	-	RIKEN cDNA 6030498E09 gene	protein-coding	0.030000	0.537313	
mm_68430.1	chr7	109840792	109840992	-	1	NA	NA	NA	24787	NM_020052	56788	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	0.000000	0.512438	
mm_35088.1	chr4	7911964	7912164	-	1	NA	NA	NA	326977	NM_007592	12319	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	0.005000	0.407960	
mm_84761.1	chr9	75598997	75599197	-	1	NA	NA	NA	36	NM_001038710	50876	Mm.291880	NM_016711	ENSMUSG00000032186	Tmod2	N-Tmod|NTMOD	tropomodulin 2	protein-coding	0.005000	0.417910	75(CTCTCTAAAGGC,-,0.00)
mm_95868.1	chr11	58040318	58040518	+	1	NA	NA	NA	31354	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.015000	0.542289	
mm_67726.1	chr7	90129248	90129448	-	1	NA	NA	NA	126	NR_046006	78329	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	0.015000	0.467662	
mm_25982.1	chr3	133310100	133310300	+	1	NA	NA	NA	90	NM_146141	74776	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0.140000	0.731343	
mm_151440.1	chr19	57361129	57361329	+	1	NA	NA	NA	220	NM_145505	226252	Mm.358870	NM_145505	ENSMUSG00000033478	Fam160b1	AI450540|mKIAA1600	family with sequence similarity 160, member B1	protein-coding	0.150000	0.796020	
mm_162067.1	chrX	11327626	11327826	+	1	NA	NA	NA	-96	NM_001114529	236663	Mm.473680	NM_001114529	ENSMUSG00000069038	H2al1j	EG236663|Gm4906	H2A histone family member L1J	protein-coding	0.000000	0.467662	
mm_16621.1	chr2	5672868	5673068	-	1	NA	NA	NA	3078	NM_001290376	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.015000	0.383085	
mm_37411.1	chr4	122859221	122859421	-	1	NA	NA	NA	23094	NM_008917	19063	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.030000	0.537313	
mm_156821.1	chrX	164140517	164140717	+	1	NA	NA	NA	137	NM_027286	70008	Mm.13451	NM_027286	ENSMUSG00000015405	Ace2	2010305L05Rik	angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	protein-coding	0.010000	0.462687	
mm_68016.1	chr7	100956025	100956225	-	1	NA	NA	NA	8241	NM_183168	233571	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.010000	0.497512	
mm_112011.1	chr12	110978872	110979072	-	1	NA	NA	NA	49	NM_175207	74251	Mm.250989	NM_175207	ENSMUSG00000037904	Ankrd9	2500003O20Rik	ankyrin repeat domain 9	protein-coding	0.165000	0.791045	
mm_123764.1	chr14	70206020	70206220	-	1	NA	NA	NA	-98	NM_001271407	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.070000	0.691542	
mm_2278.1	chr1	91306073	91306273	+	1	NA	NA	NA	7835	NM_016717	50880	Mm.25724	NM_016717	ENSMUSG00000026307	Scly	9830169H08|A930015N15Rik|SCL|Scly1|Scly2	selenocysteine lyase	protein-coding	0.025000	0.517413	
mm_12409.1	chr2	70509263	70509463	+	1	NA	NA	NA	544	NM_025744	66748	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	0.140000	0.771144	
mm_134005.1	chr16	4790111	4790311	-	1	NA	NA	NA	-276	NM_025670	66626	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0.065000	0.641791	
mm_89959.1	chr10	111296106	111296306	+	1	NA	NA	NA	-2473	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.030000	0.328358	
mm_117507.1	chr13	78200352	78200552	-	1	NA	NA	NA	-1579	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.040000	0.467662	-34(CTCCATATAAGG,-,0.00),-32(CCATATAAGGCA,+,0.00)
mm_71867.1	chr8	69105813	69106013	+	1	NA	NA	NA	-16691	NM_153054	110877	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	0.040000	0.482587	
mm_70684.1	chr8	15010974	15011174	+	1	NA	NA	NA	49	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.085000	0.686567	
mm_27834.1	chr3	79138371	79138571	-	1	NA	NA	NA	6416	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.378109	
mm_126373.1	chr15	80148617	80148817	+	1	NA	NA	NA	15563	NM_025609	66513	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	0.020000	0.572139	
mm_28731.1	chr3	95735936	95736136	-	1	NA	NA	NA	-1063	NR_105981	102466787		NR_105981	ENSMUSG00000098737	Mir7014	Gm27837|mmu-mir-7014	microRNA 7014	ncRNA	0.060000	0.616915	
mm_57713.1	chr6	128707684	128707884	-	1	NA	NA	NA	15262	NM_001099918	100043861	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	0.010000	0.442786	
mm_34800.1	chr4	154810400	154810600	+	1	NA	NA	NA	-45700	NM_172878	242800	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	0.030000	0.542289	72(CCTCATATACCC,+,0.00)
mm_76119.1	chr8	80859164	80859364	-	1	NA	NA	NA	21215	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.030000	0.517413	
mm_93375.1	chr10	105521681	105521881	-	1	NA	NA	NA	52698	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.000000	0.432836	
mm_19372.1	chr2	91183858	91184058	-	1	NA	NA	NA	-911	NM_145527	228355	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0.020000	0.522388	
mm_38790.1	chr4	148100762	148100962	-	1	NA	NA	NA	-12798	NM_001301281	11610	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.030000	0.527363	
mm_117904.1	chr13	99430127	99430327	-	1	NA	NA	NA	-17401	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.020000	0.472637	
mm_150292.1	chr19	34492997	34493197	+	1	NA	NA	NA	-17962	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.005000	0.427861	
mm_133251.1	chr16	77301888	77302088	+	1	NA	NA	NA	-27340	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.005000	0.512438	
mm_6596.1	chr1	75316826	75317026	-	1	NA	NA	NA	91	NM_016878	13437	Mm.24680	NM_016878	ENSMUSG00000026209	Dnpep	AA407814	aspartyl aminopeptidase	protein-coding	0.040000	0.592040	
mm_77846.1	chr9	5301058	5301258	+	1	NA	NA	NA	2641	NM_009807	12362	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.010000	0.383085	
mm_165493.1	chr2	165792715	165792915	-	1	NA	NA	NA	65358	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.040000	0.552239	
mm_80093.1	chr9	70235785	70235985	+	1	NA	NA	NA	28535	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.005000	0.487562	
mm_17130.1	chr2	24919494	24919694	-	1	NA	NA	NA	15	NM_172545	77683	Mm.24176	NM_172545	ENSMUSG00000036893	Ehmt1	9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876	euchromatic histone methyltransferase 1	protein-coding	0.135000	0.796020	
mm_26669.1	chr3	154711057	154711257	+	1	NA	NA	NA	24	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.005000	0.517413	
mm_72948.1	chr8	92193265	92193465	+	1	NA	NA	NA	162755	NR_110452	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	0.005000	0.343284	46(CTTTTTATGTCC,+,0.00)
mm_75034.1	chr8	32264149	32264349	-	1	NA	NA	NA	112354	NR_046039	666589	Mm.367675	NR_046039		Gm8179	EG666589	predicted gene 8179	ncRNA	0.005000	0.353234	
mm_160917.1	chr11	83429260	83429460	-	1	NA	NA	NA	161	NM_001013759	237891	Mm.340523	NM_001013759	ENSMUSG00000020686	Gas2l2	-	growth arrest-specific 2 like 2	protein-coding	0.030000	0.582090	
mm_154377.1	chrM	11081	11281	+	1	NA	NA	NA	NA	NA									0.025000	0.457711	42(CCACTTATAGCC,+,0.00)
mm_5805.1	chr1	52232890	52233090	-	1	NA	NA	NA	242	NM_001081081	14660	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.150000	0.731343	36(GCTCTTAAGGCC,+,0.00)
mm_9504.1	chr1	173732612	173732812	-	1	NA	NA	NA	9097	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.005000	0.343284	
mm_137989.1	chr17	33629433	33629633	+	1	NA	NA	NA	441	NM_026712	328801	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	0.010000	0.487562	
mm_39663.1	chr5	25181402	25181602	+	1	NA	NA	NA	22	NM_026449	67909	Mm.141471	NM_026449	ENSMUSG00000028938	Galntl5	1700021B12Rik|Galnt15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	protein-coding	0.000000	0.502488	
mm_88734.1	chr10	80249355	80249555	+	1	NA	NA	NA	3	NM_029272	75406	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0.090000	0.646766	
mm_49857.1	chr6	38501728	38501928	+	1	NA	NA	NA	-5497	NR_106130	102466843		NR_106130	ENSMUSG00000098285	Mir7670	Gm27707|mmu-mir-7670	microRNA 7670	ncRNA	0.005000	0.328358	
mm_149753.1	chr19	22692620	22692820	+	1	NA	NA	NA	101	NM_001035244	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.020000	0.527363	
mm_20666.1	chr2	132128601	132128801	-	1	NA	NA	NA	16407	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.010000	0.383085	-65(TGATATTAAAGG,-,0.00)
mm_158174.1	chrX	103821866	103822066	-	1	NA	NA	NA	22	NM_009197	20502	Mm.388973	NM_009197	ENSMUSG00000033965	Slc16a2	AW105741|Mct8|Xpct	solute carrier family 16 (monocarboxylic acid transporters), member 2	protein-coding	0.065000	0.706468	
mm_160677.1	chr10	13091685	13091885	+	1	NA	NA	NA	940	NR_131912	338438		NR_131912		Hymai	-	hydatidiform mole associated and imprinted transcript	ncRNA	0.040000	0.502488	
mm_155589.1	chrX	81070541	81070741	+	1	NA	NA	NA	-3	NM_138751	192216	Mm.490421	NM_138751	ENSMUSG00000025666	Tmem47	3010015F07Rik|AI115536|BCMP1|Tm4sf10	transmembrane protein 47	protein-coding	0.115000	0.731343	
mm_136663.1	chr17	6079834	6080034	+	1	NA	NA	NA	106	NM_181392	66467	Mm.303441	NM_181392	ENSMUSG00000034345	Gtf2h5	2700017P07Rik|2810432H05Rik|D17Wsu155e	general transcription factor IIH, polypeptide 5	protein-coding	0.085000	0.636816	-34(GCCTAGAAAAAG,-,0.00)
mm_125266.1	chr15	35501810	35502010	+	1	NA	NA	NA	130364	NM_177151	666173	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0.000000	0.268657	-65(TCTTTTAAACAA,+,0.00)
mm_18157.1	chr2	45094159	45094359	-	1	NA	NA	NA	16018	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.000000	0.388060	
mm_23268.1	chr3	51484233	51484433	+	1	NA	NA	NA	367	NM_016858	19338	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.105000	0.666667	
mm_22977.1	chr3	32817448	32817648	+	1	NA	NA	NA	-78	NM_001013024	72607	Mm.316153	NM_001013024	ENSMUSG00000056900	Usp13	2700071E21Rik|AI848077|ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding	0.135000	0.746269	
mm_39722.1	chr5	28210028	28210228	+	1	NA	NA	NA	40	NM_001310511	269637	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.075000	0.567164	
mm_98832.1	chr11	97435223	97435423	+	1	NA	NA	NA	-14837	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.025000	0.527363	
mm_91908.1	chr10	60245099	60245299	-	1	NA	NA	NA	-25939	NM_016803	53374	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	0.030000	0.542289	
mm_94157.1	chr10	128744975	128745175	-	1	NA	NA	NA	-1019	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.010000	0.398010	
mm_3695.1	chr1	153752760	153752960	+	1	NA	NA	NA	3434	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.025000	0.447761	
mm_149238.1	chr19	10183434	10183634	+	1	NA	NA	NA	646	NM_146094	76267	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0.035000	0.572139	
mm_165824.1	chr3	149954491	149954691	+	1	NA	NA	NA	679854	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.000000	0.432836	
mm_50754.1	chr6	53287263	53287463	+	1	NA	NA	NA	60	NM_001327821	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.065000	0.537313	
mm_103540.1	chr11	77506692	77506892	-	1	NA	NA	NA	6481	NM_001024920	216964	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	0.005000	0.587065	
mm_171183.1	chr3	37481484	37481684	+	1	NA	NA	NA	61634	NM_021343	57815	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0.060000	0.547264	
mm_19129.1	chr2	80129161	80129361	-	1	NA	NA	NA	151	NM_001159582	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.030000	0.467662	
mm_22976.1	chr3	32736964	32737164	+	1	NA	NA	NA	1	NM_025316	66046	Mm.28058	NM_025316	ENSMUSG00000027673	Ndufb5	0610007D05Rik|AU015782|CI-SGDH|SGDH	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5	protein-coding	0.085000	0.671642	
mm_41244.1	chr5	88765751	88765951	+	1	NA	NA	NA	838	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.015000	0.412935	-71(CCTTTAAAACTC,+,0.00)
mm_128.1	chr1	9908583	9908783	+	1	NA	NA	NA	45	NM_177722	240697	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	0.080000	0.666667	
mm_39527.1	chr5	21269795	21269995	+	1	NA	NA	NA	83628	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.020000	0.447761	
mm_129350.1	chr15	77915542	77915742	-	1	NA	NA	NA	13352	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.005000	0.597015	
mm_173325.1	chrY	90737939	90738139	+	1	NA	NA	NA	17011	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.477612	
mm_66783.1	chr7	47008123	47008323	-	1	NA	NA	NA	191	NM_175318	101685	Mm.155687	NM_175318	ENSMUSG00000049516	Spty2d1	5830435K17Rik|AI852426|P16H6	SPT2, Suppressor of Ty, domain containing 1 (S. cerevisiae)	protein-coding	0.110000	0.661692	
mm_107730.1	chr12	57501117	57501317	+	1	NA	NA	NA	44904	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.010000	0.447761	
mm_38156.1	chr4	135131130	135131330	-	1	NA	NA	NA	10585	NM_019732	12399	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.025000	0.592040	
mm_13613.1	chr2	113405044	113405244	+	1	NA	NA	NA	-35920	NM_001285459	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.010000	0.606965	
mm_34918.1	chr4	155734736	155734936	+	1	NA	NA	NA	32	NM_001101506	381582	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	0.080000	0.706468	
mm_16356.1	chr2	174438132	174438332	+	1	NA	NA	NA	807	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.035000	0.597015	
mm_17042.1	chr2	20804210	20804410	-	1	NA	NA	NA	163411	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.005000	0.398010	
mm_132395.1	chr16	35000829	35001029	+	1	NA	NA	NA	-21492	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.025000	0.547264	
mm_134944.1	chr16	31275159	31275359	-	1	NA	NA	NA	18	NM_025800	66849	Mm.291593	NM_025800	ENSMUSG00000047714	Ppp1r2	0610025N14Rik|2310007G06Rik|4930440J04Rik|5430408E15Rik|D16Ertd248e|IPP-2	protein phosphatase 1, regulatory (inhibitor) subunit 2	protein-coding	0.165000	0.791045	
mm_131534.1	chr16	17722477	17722677	+	1	NA	NA	NA	323	NM_001285886	94112	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.040000	0.582090	
mm_40819.1	chr5	72261335	72261535	+	1	NA	NA	NA	58092	NM_153389	231287	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.010000	0.402985	
mm_43294.1	chr5	134313885	134314085	+	1	NA	NA	NA	775	NM_001080746	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.135000	0.701493	
mm_97511.1	chr11	78499029	78499229	+	1	NA	NA	NA	9	NM_011707	22370	Mm.3667	NM_011707	ENSMUSG00000017344	Vtn	AI256434|Vn	vitronectin	protein-coding	0.015000	0.557214	
mm_18417.1	chr2	60705502	60705702	-	1	NA	NA	NA	17001	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.025000	0.567164	
mm_63967.1	chr7	139944518	139944718	+	1	NA	NA	NA	762	NM_009482	22286	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	0.090000	0.626866	
mm_20105.1	chr2	121085741	121085941	-	1	NA	NA	NA	-82	NM_028799	74176	Mm.20187	NM_028799	ENSMUSG00000053675	Tgm5	2310007C07Rik|TGMX|TGx	transglutaminase 5	protein-coding	0.010000	0.567164	
mm_165359.1	chr2	122369066	122369266	-	1	NA	NA	NA	-248	NM_001013829	435684	Mm.458215	NM_001013829	ENSMUSG00000033256	Shf	-	Src homology 2 domain containing F	protein-coding	0.125000	0.786070	
mm_74977.1	chr8	27141426	27141626	-	1	NA	NA	NA	-1384	NR_045840	71082	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.005000	0.383085	
mm_138786.1	chr17	37270891	37271091	+	1	NA	NA	NA	757	NM_013819	14991	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	0.025000	0.547264	
mm_108935.1	chr12	101975269	101975469	+	1	NA	NA	NA	-605	NM_016856	51786	Mm.716	NM_016856	ENSMUSG00000041781	Cpsf2	100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367	cleavage and polyadenylation specific factor 2	protein-coding	0.060000	0.522388	-34(GTTTTTAAAAGG,-,0.00),-33(TTTTTAAAAGGC,+,0.00)
mm_157411.1	chrX	38440213	38440413	-	1	NA	NA	NA	16147	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.020000	0.378109	
mm_132521.1	chr16	37624248	37624448	+	1	NA	NA	NA	30020	NM_026610	68194	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 4	protein-coding	0.015000	0.492537	
mm_12874.1	chr2	84549839	84550039	+	1	NA	NA	NA	-43066	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	OTTMUSG00000013441	predicted gene 13710	ncRNA	0.010000	0.432836	
mm_17941.1	chr2	36103925	36104125	-	1	NA	NA	NA	35	NM_001083126	16874	Mm.12881	NM_008500	ENSMUSG00000026890	Lhx6	Lhx6.1	LIM homeobox protein 6	protein-coding	0.060000	0.616915	-79(GGCTTTAAATGC,-,0.00),-77(CTTTAAATGCCC,+,0.00)
mm_125027.1	chr15	25751693	25751893	+	1	NA	NA	NA	-91505	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.030000	0.532338	
mm_54064.1	chr6	13872191	13872391	-	1	NA	NA	NA	722	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0.020000	0.388060	-69(GTGTTTAAAAGG,-,0.00)
mm_20449.1	chr2	129364714	129364914	-	1	NA	NA	NA	-5088	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.010000	0.437811	
mm_167270.1	chr8	32712403	32712603	+	1	NA	NA	NA	237523	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding	0.020000	0.467662	
mm_123438.1	chr14	64942183	64942383	-	1	NA	NA	NA	7574	NM_177338	219150	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.005000	0.248756	
mm_147558.1	chr18	54987600	54987800	-	1	NA	NA	NA	2480	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.040000	0.552239	
mm_71415.1	chr8	46476460	46476660	+	1	NA	NA	NA	5523	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.020000	0.452736	
mm_139915.1	chr17	70963688	70963888	+	1	NA	NA	NA	26728	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.050000	0.542289	
mm_7146.1	chr1	91398619	91398819	-	1	NA	NA	NA	64	NM_023343	67444	Mm.337240	NM_023343	ENSMUSG00000026309	Ilkap	0710007A14Rik|1600009O09Rik|PP2C-DELTA	integrin-linked kinase-associated serine/threonine phosphatase 2C	protein-coding	0.180000	0.805970	
mm_53827.1	chr6	147531315	147531515	+	1	NA	NA	NA	55544	NM_025911	67015	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding	0.005000	0.532338	
mm_50597.1	chr6	49087044	49087244	+	1	NA	NA	NA	13349	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.015000	0.358209	-6(TTTTTTAAAGCT,+,0.00)
mm_173366.1	chrY	90819812	90820012	+	1	NA	NA	NA	19494	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.477612	
mm_96444.1	chr11	67455012	67455212	+	1	NA	NA	NA	-77886	NM_008088	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.125000	0.771144	
mm_100807.1	chr11	5074780	5074980	-	1	NA	NA	NA	-9553	NM_001190406	78926	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0.010000	0.437811	
mm_21614.1	chr2	164256608	164256808	-	1	NA	NA	NA	-65	NM_173377	329557	Mm.118769	NM_173377	ENSMUSG00000050383	Svs3b	9530004A22Rik	seminal vesicle secretory protein 3B	protein-coding	0.000000	0.432836	
mm_145532.1	chr18	60803747	60803947	+	1	NA	NA	NA	-2	NM_001042605	16149	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	0.020000	0.557214	-33(AGCTTTAAGAGG,-,0.00),-32(GCTTTAAGAGGT,+,0.00)
mm_5062.1	chr1	194991153	194991353	+	1	NA	NA	NA	-14294	NR_033564	320400	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.000000	0.507463	
mm_142122.1	chr17	35895942	35896142	-	1	NA	NA	NA	1336	NM_001033630	69662	Mm.260159	NM_001033630	ENSMUSG00000050705	2310061I04Rik	-	RIKEN cDNA 2310061I04 gene	protein-coding	0.020000	0.537313	
mm_82367.1	chr9	14596427	14596627	-	1	NA	NA	NA	18473	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.015000	0.537313	
mm_133814.1	chr16	95703858	95704058	+	1	NA	NA	NA	1551	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.015000	0.393035	7(TCATTAAAAGCC,+,0.00)
mm_81742.1	chr9	113803292	113803492	+	1	NA	NA	NA	-9194	NM_001286601	76499	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.005000	0.353234	
mm_129924.1	chr15	84444225	84444425	-	1	NA	NA	NA	2285	NM_001347543	72301	Mm.275387	NM_001163145	ENSMUSG00000062760	1810041L15Rik	Kiaa1644	RIKEN cDNA 1810041L15 gene	protein-coding	0.020000	0.626866	
mm_59478.1	chr7	27459281	27459481	+	1	NA	NA	NA	6963	NM_001290525	233016	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0.040000	0.661692	
mm_168685.1	chr11	96032577	96032777	+	1	NA	NA	NA	-2240	NM_033568	27681	Mm.372235	NM_033568	ENSMUSG00000006058	Snf8	D11Moh34	SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)	protein-coding	0.020000	0.422886	-21(GTCTTTAAAAAA,-,0.00)
mm_102711.1	chr11	67051659	67051859	-	1	NA	NA	NA	859	NM_025510	66358	Mm.22511	NM_025510	ENSMUSG00000020910	Adprm	2310004I24Rik|MDS006	ADP-ribose/CDP-alcohol diphosphatase, manganese dependent	protein-coding	0.025000	0.432836	
mm_162288.1	chr1	25829987	25830187	-	1	NA	NA	NA	-380	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.120000	0.706468	
mm_67560.1	chr7	81829379	81829579	-	1	NA	NA	NA	-48	NM_146193	83962	Mm.439893	NM_146193	ENSMUSG00000025103	Btbd1	1190005H08Rik	BTB (POZ) domain containing 1	protein-coding	0.175000	0.800995	
mm_113822.1	chr13	46944739	46944939	+	1	NA	NA	NA	-15121	NM_010617	16553	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	0.030000	0.656716	
mm_20920.1	chr2	150822456	150822656	-	1	NA	NA	NA	35760	NM_153781	110078	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.000000	0.412935	
mm_113458.1	chr13	35963029	35963229	+	1	NA	NA	NA	-4777	NM_029628	76487	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	0.030000	0.502488	
mm_98947.1	chr11	98446938	98447138	+	1	NA	NA	NA	204	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.045000	0.567164	
mm_19619.1	chr2	102812420	102812620	-	1	NA	NA	NA	89145	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.005000	0.323383	
mm_133737.1	chr16	93912281	93912481	+	1	NA	NA	NA	17186	NM_001165925	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.015000	0.562189	
mm_104687.1	chr11	97766384	97766584	-	1	NA	NA	NA	129	NM_026186	67480	Mm.33206	NM_026186	ENSMUSG00000018541	Cwc25	1300013D05Rik|AA473636|Ccdc49|R75228	CWC25 spliceosome-associated protein	protein-coding	0.050000	0.587065	
mm_79247.1	chr9	50565305	50565505	+	1	NA	NA	NA	37	NM_008360	16173	Mm.1410	NM_008360	ENSMUSG00000039217	Il18	Igif|Il-18	interleukin 18	protein-coding	0.005000	0.572139	
mm_138017.1	chr17	33909508	33909708	+	1	NA	NA	NA	7	NM_001199733	13163	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0.100000	0.691542	
mm_54327.1	chr6	30509648	30509848	-	1	NA	NA	NA	25	NM_001347087	72649	Mm.45418	NM_178625	ENSMUSG00000029782	Tmem209	2700094F01Rik|AI428435	transmembrane protein 209	protein-coding	0.075000	0.641791	
mm_130026.1	chr15	88891400	88891600	-	1	NA	NA	NA	29306	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.035000	0.522388	
mm_99194.1	chr11	101009434	101009634	+	1	NA	NA	NA	82	NM_001243051	11975	Mm.340818	NM_016920	ENSMUSG00000019302	Atp6v0a1	AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1	ATPase, H+ transporting, lysosomal V0 subunit A1	protein-coding	0.135000	0.711443	
mm_68291.1	chr7	105736334	105736534	-	1	NA	NA	NA	150	NM_025897	101867	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.095000	0.671642	
mm_91364.1	chr10	29035361	29035561	-	1	NA	NA	NA	-49155	NM_026336	67719	Mm.440480	NM_026336	ENSMUSG00000015519	2310057J18Rik	2210414P04Rik|Leg1	RIKEN cDNA 2310057J18 gene	protein-coding	0.000000	0.447761	-75(ACTTATAAAGAG,+,0.00)
mm_132890.1	chr16	48842583	48842783	+	1	NA	NA	NA	131	NM_020509	57262	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0.005000	0.477612	
mm_167456.1	chr8	123254225	123254425	+	1	NA	NA	NA	-103	NM_028200	72325	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	0.120000	0.721393	
mm_92423.1	chr10	77059860	77060060	-	1	NA	NA	NA	26748	NM_031196	20509	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.020000	0.592040	
mm_110517.1	chr12	54862377	54862577	-	1	NA	NA	NA	400	NM_007688	12632	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	0.095000	0.606965	
mm_97294.1	chr11	76261388	76261588	+	1	NA	NA	NA	17752	NM_183263	67390	Mm.24886	NM_183263	ENSMUSG00000038046	Rnmtl1	4833420N02Rik|AI255153|HC90|Mrm3	RNA methyltransferase like 1	protein-coding	0.030000	0.552239	
mm_163484.1	chr12	108875437	108875637	-	1	NA	NA	NA	17661	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.010000	0.527363	
mm_172306.1	chr7	104353138	104353338	-	1	NA	NA	NA	111	NM_175677	319236	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	0.030000	0.492537	
mm_140048.1	chr17	74528247	74528447	+	1	NA	NA	NA	52	NM_007566	12211	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.085000	0.681592	
mm_56544.1	chr6	99726308	99726508	-	1	NA	NA	NA	-16	NM_001170419	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.150000	0.766169	-33(GCCTTTATAACC,+,0.00)
mm_23597.1	chr3	65108917	65109117	+	1	NA	NA	NA	-351	NM_010597	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.015000	0.552239	30(GCTCCTTAAAGG,-,0.00),31(CTCCTTAAAGGG,-,0.00),33(CCTTAAAGGGAC,+,0.00)
mm_37064.1	chr4	116074909	116075109	-	1	NA	NA	NA	61	NM_025641	66576	Mm.181721	NM_025641	ENSMUSG00000063882	Uqcrh	2210416J04Rik|2310021J10Rik|2610041P16Rik	ubiquinol-cytochrome c reductase hinge protein	protein-coding	0.065000	0.552239	
mm_8486.1	chr1	153549963	153550163	-	1	NA	NA	NA	-349	NM_028749	74091	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0.005000	0.497512	
mm_123238.1	chr14	60177421	60177621	-	1	NA	NA	NA	51394	NR_030458	751526		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA	0.155000	0.776119	
mm_65317.1	chr7	24897158	24897358	-	1	NA	NA	NA	-253	NM_007655	12518	Mm.1355	NM_007655	ENSMUSG00000003379	Cd79a	Ig-alpha|Iga|Igalpha|Ly-54|Ly54|mb-1	CD79A antigen (immunoglobulin-associated alpha)	protein-coding	0.030000	0.587065	
mm_36448.1	chr4	82498295	82498495	-	1	NA	NA	NA	7384	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.035000	0.527363	
mm_25110.1	chr3	101460519	101460719	+	1	NA	NA	NA	83494	NM_207205	78908	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	0.015000	0.313433	
mm_77434.1	chr8	121570231	121570431	-	1	NA	NA	NA	8475	NM_133765	76454	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0.040000	0.601990	
mm_62273.1	chr7	99579490	99579690	+	1	NA	NA	NA	27321	NR_029760	723840		NR_029760	ENSMUSG00000065571	Mir326	Mirn326|mir-326|mmu-mir-326	microRNA 326	ncRNA	0.020000	0.512438	
mm_88996.1	chr10	81575163	81575363	+	1	NA	NA	NA	-24	NM_019725	21886	Mm.38608	NM_019725	ENSMUSG00000034771	Tle2	Grg2|mKIAA4188	transducin-like enhancer of split 2	protein-coding	0.105000	0.741294	
mm_135385.1	chr16	44140477	44140677	-	1	NA	NA	NA	768	NM_028108	72117	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	0.050000	0.567164	
mm_31173.1	chr4	43473315	43473515	+	1	NA	NA	NA	10294	NM_019436	54390	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	0.005000	0.407960	
mm_47493.1	chr5	124006460	124006660	-	1	NA	NA	NA	9708	NR_105999	102465625		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.055000	0.696517	
mm_111987.1	chr12	110486085	110486285	-	1	NA	NA	NA	446	NM_012023	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.040000	0.592040	
mm_135827.1	chr16	58507810	58508010	-	1	NA	NA	NA	15402	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.030000	0.487562	
mm_137469.1	chr17	26676296	26676496	+	1	NA	NA	NA	0	NM_025272	11974	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.110000	0.661692	
mm_160344.1	chr8	19447520	19447720	-	1	NA	NA	NA	-14	NM_153108	244334	Mm.390008	NM_153108	ENSMUSG00000031471	Defb8	BD-8|Defr1	defensin beta 8	protein-coding	0.000000	0.472637	-34(CACTATATAAGG,-,0.00)
mm_128017.1	chr15	23437312	23437512	-	1	NA	NA	NA	400949	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding	0.010000	0.383085	
mm_88568.1	chr10	79669336	79669536	+	1	NA	NA	NA	26	NM_148934	110012	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	0.115000	0.666667	
mm_130153.1	chr15	91191293	91191493	-	1	NA	NA	NA	414	NM_011994	26874	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.035000	0.462687	
mm_110393.1	chr12	41485888	41486088	-	1	NA	NA	NA	69	NM_001271708	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.030000	0.542289	
mm_94907.1	chr11	29373632	29373832	+	1	NA	NA	NA	-440	NM_176841	108686	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0.130000	0.751244	
mm_89401.1	chr10	90576564	90576764	+	1	NA	NA	NA	-27	NM_001177396	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.035000	0.512438	
mm_37177.1	chr4	117251757	117251957	-	1	NA	NA	NA	60	NM_001145637	381544	Mm.23504	NM_001033774	ENSMUSG00000060268	Gm1661	Gm1662|Ncrna00082	predicted gene 1661	protein-coding	0.075000	0.651741	
mm_32987.1	chr4	120161322	120161522	+	1	NA	NA	NA	216	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.050000	0.661692	
mm_38154.1	chr4	135073472	135073672	-	1	NA	NA	NA	-47073	NM_019732	12399	Mm.378894	NM_019732	ENSMUSG00000070691	Runx3	AML2|Cbfa3|Pebp2a3	runt related transcription factor 3	protein-coding	0.020000	0.592040	42(GTGTCTAAGAGG,-,0.00)
mm_39312.1	chr5	8055000	8055200	+	1	NA	NA	NA	-1442	NM_001080974	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.030000	0.477612	
mm_169976.1	chr17	14978686	14978886	-	1	NA	NA	NA	26	NM_001123368	100041586	Mm.440445	NM_001123368	ENSMUSG00000079710	Gm3417	-	predicted gene 3417	protein-coding	0.135000	0.721393	
mm_96613.1	chr11	69098626	69098826	+	1	NA	NA	NA	-230	NM_011065	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.020000	0.572139	-68(TCCCTGAAAAGG,-,0.00)
mm_37255.1	chr4	118409151	118409351	-	1	NA	NA	NA	12	NM_198170	230676	Mm.415218	NM_198170	ENSMUSG00000033253	Szt2	6430407N22|ENSMUSG00000058432|TIGR	seizure threshold 2	protein-coding	0.075000	0.641791	
mm_121301.1	chr14	105681728	105681928	+	1	NA	NA	NA	-58058	NR_105814	102465207		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	0.045000	0.457711	
mm_46741.1	chr5	110839627	110839827	-	1	NA	NA	NA	50	NM_153571	100900	Mm.200231	NM_153571	ENSMUSG00000043510	Hscb	AI325508|AW049829|Hsc20	HscB iron-sulfur cluster co-chaperone	protein-coding	0.070000	0.636816	
mm_53451.1	chr6	134640897	134641097	+	1	NA	NA	NA	57	NM_026371	67774	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	0.135000	0.726368	
mm_158557.1	chrX	150336191	150336391	-	1	NA	NA	NA	-22927	NM_001101501	333588	Mm.159296	NM_001101501		Gm15104	OTTMUSG00000018998	predicted gene 15104	protein-coding	0.000000	0.487562	
mm_42227.1	chr5	113490648	113490848	+	1	NA	NA	NA	-59672	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.130000	0.786070	
mm_59071.1	chr7	19508649	19508849	+	1	NA	NA	NA	79	NM_025960	67091	Mm.44213	NM_025960	ENSMUSG00000002043	Trappc6a	1810073E21Rik|4930519D19Rik|AI480686|TRS33|mhyp	trafficking protein particle complex 6A	protein-coding	0.110000	0.671642	
mm_56803.1	chr6	116657111	116657311	-	1	NA	NA	NA	6527	NM_001166580	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.000000	0.412935	
mm_24880.1	chr3	95995895	95996095	+	1	NA	NA	NA	-156	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.190000	0.815920	
mm_49852.1	chr6	38433757	38433957	+	1	NA	NA	NA	-68	NM_177185	320538	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	0.075000	0.601990	
mm_125077.1	chr15	25984370	25984570	+	1	NA	NA	NA	104	NM_144523	52521	Mm.29145	NM_144523	ENSMUSG00000052253	Zfp622	1110033B05Rik|D15Ertd806e|ZPR9|Znf622	zinc finger protein 622	protein-coding	0.065000	0.597015	
mm_168573.1	chr1	171050432	171050632	+	1	NA	NA	NA	8871	NM_010188	14131	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	0.010000	0.398010	
mm_51150.1	chr6	70698323	70698523	+	1	NA	NA	NA	93752	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.487562	-14(GCTTCTTTAAGG,-,0.00)
mm_49439.1	chr6	29319043	29319243	+	1	NA	NA	NA	3	NM_001289664	330277	Mm.87624	NM_207258	ENSMUSG00000039742	Fam71f1	GARI-L1|Gm764|NYD-SP18	family with sequence similarity 71, member F1	protein-coding	0.010000	0.527363	
mm_49957.1	chr6	40628732	40628932	+	1	NA	NA	NA	1	NM_001171003	232714	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding	0.010000	0.477612	
mm_70225.1	chr7	145236482	145236682	-	1	NA	NA	NA	-28463	NR_033626	100040049	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.010000	0.502488	
mm_50312.1	chr6	47869884	47870084	+	1	NA	NA	NA	-7571	NM_146175	101095	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	0.005000	0.368159	-97(CCCCCTATATGG,-,0.00),-95(CCCTATATGGTG,+,0.00)
mm_18068.1	chr2	42244969	42245169	-	1	NA	NA	NA	202499	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.010000	0.248756	
mm_6845.1	chr1	84237632	84237832	-	1	NA	NA	NA	-18771	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.383085	
mm_20660.1	chr2	132112246	132112446	-	1	NA	NA	NA	32762	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.010000	0.567164	
mm_128756.1	chr15	64922233	64922433	-	1	NA	NA	NA	-37	NM_009623	11514	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	0.090000	0.701493	
mm_8647.1	chr1	156430816	156431016	-	1	NA	NA	NA	-10001	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.025000	0.472637	
mm_118351.1	chr13	115052633	115052833	-	1	NA	NA	NA	37425	NM_134058	105083	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota homolog (Drosophila)	protein-coding	0.025000	0.452736	-95(TTCTTTAAAAAC,-,0.00)
mm_80036.1	chr9	68906784	68906984	+	1	NA	NA	NA	141538	NR_033299	320440	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.020000	0.407960	
mm_147730.1	chr18	61014131	61014331	-	1	NA	NA	NA	-32	NM_201353	240332	Mm.39846	NM_201353	ENSMUSG00000052026	Slc6a7	AW455934|PROT	solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	protein-coding	0.110000	0.721393	
mm_148119.1	chr18	75278687	75278887	-	1	NA	NA	NA	18530	NR_045394	100503117	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.015000	0.437811	
mm_32990.1	chr4	120405097	120405297	+	1	NA	NA	NA	-84	NM_001159630	29871	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	0.190000	0.810945	
mm_108724.1	chr12	87200412	87200612	+	1	NA	NA	NA	-31	NM_001290288	238333	Mm.302304	NM_001290288	ENSMUSG00000090812	Samd15	Gm263	sterile alpha motif domain containing 15	protein-coding	0.055000	0.502488	
mm_68061.1	chr7	101845220	101845420	-	1	NA	NA	NA	11	NM_001303231	14276	Mm.439666	NM_008035	ENSMUSG00000032725	Folr2	FBP2|FR-P3|FR-beta|Folbp-2|Folbp2	folate receptor 2 (fetal)	protein-coding	0.020000	0.507463	
mm_59790.1	chr7	28982762	28982962	+	1	NA	NA	NA	8	NM_008279	26411	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.015000	0.666667	
mm_151054.1	chr19	47178872	47179072	+	1	NA	NA	NA	152	NM_021360	18011	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.165000	0.800995	
mm_68861.1	chr7	126414697	126414897	-	1	NA	NA	NA	73	NM_009844	12478	Mm.4360	NM_009844	ENSMUSG00000030724	Cd19	AW495831	CD19 antigen	protein-coding	0.025000	0.577114	
mm_47970.1	chr5	135909142	135909342	-	1	NA	NA	NA	21323	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.050000	0.572139	
mm_64435.1	chr7	142652881	142653081	+	1	NA	NA	NA	2015	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.005000	0.442786	47(TGCTTTTTAGGG,-,0.00),49(CTTTTTAGGGTA,+,0.00)
mm_14197.1	chr2	127142643	127142843	+	1	NA	NA	NA	-153	NM_001163528	73338	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	0.000000	0.532338	
mm_171872.1	chr5	28852505	28852705	+	1	NA	NA	NA	-343388	NM_001289757	56874	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	0.010000	0.467662	
mm_130590.1	chr15	99637711	99637911	-	1	NA	NA	NA	13845	NM_001253808	26934	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	0.005000	0.393035	
mm_78403.1	chr9	28921019	28921219	+	1	NA	NA	NA	1042010	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.000000	0.298507	
mm_13028.1	chr2	91053984	91054184	+	1	NA	NA	NA	68	NM_008948	19182	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	0.120000	0.671642	
mm_158060.1	chrX	101081902	101082102	-	1	NA	NA	NA	3403	NM_001301840	11989	Mm.5140	NM_007515	ENSMUSG00000031297	Slc7a3	Atrc3|CAT-3|CAT3|SLC7A1|SLC7A2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 3	protein-coding	0.010000	0.482587	
mm_97494.1	chr11	78343401	78343601	+	1	NA	NA	NA	6	NM_011676	22248	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.125000	0.771144	
mm_51387.1	chr6	77243177	77243377	+	1	NA	NA	NA	560	NM_028880	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.030000	0.457711	
mm_138614.1	chr17	35821584	35821784	+	1	NA	NA	NA	-29	NM_133662	15937	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0.040000	0.606965	-34(GGCTCTATAAGT,-,0.00)
mm_19787.1	chr2	107058880	107059080	-	1	NA	NA	NA	671	NM_008045	14308	Mm.249525	NM_008045	ENSMUSG00000027120	Fshb	FSH|FSH-B|FSH-beta|Fshbeta	follicle stimulating hormone beta	protein-coding	0.010000	0.452736	
mm_96327.1	chr11	64741497	64741697	+	1	NA	NA	NA	-237438	NM_023479	68626	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	0.000000	0.398010	
mm_3751.1	chr1	156035634	156035834	+	1	NA	NA	NA	7	NM_001160180	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.145000	0.751244	
mm_138926.1	chr17	43801239	43801439	+	1	NA	NA	NA	-512	NM_207649	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.020000	0.517413	
mm_30774.1	chr4	17871995	17872195	+	1	NA	NA	NA	18637	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.000000	0.278607	
mm_107615.1	chr12	49389777	49389977	+	1	NA	NA	NA	225	NR_026733	67293	Mm.185800	NR_026733	ENSMUSG00000104861	3110039M20Rik	-	RIKEN cDNA 3110039M20 gene	ncRNA	0.010000	0.482587	
mm_127706.1	chr15	102998117	102998317	+	1	NA	NA	NA	7678	NM_010466	15426	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.050000	0.467662	
mm_114891.1	chr13	94359010	94359210	+	1	NA	NA	NA	150	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.105000	0.676617	
mm_80166.1	chr9	71451116	71451316	+	1	NA	NA	NA	33742	NM_001164793	28015	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	0.000000	0.517413	
mm_72061.1	chr8	71405927	71406127	+	1	NA	NA	NA	15	NM_172756	234396	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	0.105000	0.671642	
mm_35513.1	chr4	41098082	41098282	-	1	NA	NA	NA	1	NM_016689	11828	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	0.105000	0.686567	-33(GCGTATAAAGGG,-,0.00)
mm_138545.1	chr17	35263341	35263541	+	1	NA	NA	NA	318	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.130000	0.666667	
mm_114580.1	chr13	75707294	75707494	+	1	NA	NA	NA	-90	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.075000	0.631841	
mm_2775.1	chr1	130764880	130765080	+	1	NA	NA	NA	33004	NM_177604	212439	Mm.268547	NM_177604	ENSMUSG00000042510	AA986860	E030025M07|Sarg	expressed sequence AA986860	protein-coding	0.010000	0.422886	
mm_113569.1	chr13	38345024	38345224	+	1	NA	NA	NA	-592	NM_007556	12161	Mm.385759	NM_007556	ENSMUSG00000039004	Bmp6	D13Wsu115e|Vgr1	bone morphogenetic protein 6	protein-coding	0.115000	0.681592	
mm_7204.1	chr1	93068599	93068799	-	1	NA	NA	NA	13781	NM_001294150	16560	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.000000	0.557214	
mm_58841.1	chr7	16838085	16838285	+	1	NA	NA	NA	-4717	NM_001252458	101540	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.010000	0.597015	
mm_172275.1	chr6	85587903	85588103	+	1	NA	NA	NA	472	NM_145223	236266	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	Alstrom syndrome 1	protein-coding	0.065000	0.681592	
mm_12964.1	chr2	90674816	90675016	+	1	NA	NA	NA	-2299	NM_021512	59015	Mm.24532	NM_021512	ENSMUSG00000051329	Nup160	160kDa|2810011M03Rik|AA414952|AU020188|Gtl-13|Gtl1-13|Gtl13|mKIAA0197	nucleoporin 160	protein-coding	0.000000	0.373134	
mm_105430.1	chr11	103938114	103938314	-	1	NA	NA	NA	15842	NM_008740	18195	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	0.040000	0.452736	
mm_169473.1	chr14	69284885	69285085	-	1	NA	NA	NA	118	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.100000	0.736318	
mm_151067.1	chr19	47509125	47509325	+	1	NA	NA	NA	-3757	NR_045322	100503104	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0.015000	0.507463	
mm_106939.1	chr12	8674624	8674824	+	1	NA	NA	NA	43	NM_030723	80913	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.100000	0.716418	
mm_155665.1	chrX	88580285	88580485	+	1	NA	NA	NA	179168	NR_035440	100316809		NR_035440	ENSMUSG00000084535	Mir1906-1	Mir1906|Mirn1906|mmu-mir-1906|mmu-mir-1906-1	microRNA 1906-1	ncRNA	0.015000	0.527363	-32(TTCTTTATAAGC,-,0.00)
mm_141948.1	chr17	35074391	35074591	-	1	NA	NA	NA	-27	NM_033478	114654	Mm.246697	NM_033478	ENSMUSG00000073413	Ly6g6d	A930024F17Rik|G6d|G6f|MEGT1|NG25|NG32	lymphocyte antigen 6 complex, locus G6D	protein-coding	0.030000	0.562189	
mm_108792.1	chr12	91400372	91400572	+	1	NA	NA	NA	-521	NM_001113404	22095	Mm.173847	NM_011648	ENSMUSG00000020963	Tshr	AI481368|hypothroid|hyt|pet	thyroid stimulating hormone receptor	protein-coding	0.050000	0.611940	
mm_138993.1	chr17	45555555	45555755	+	1	NA	NA	NA	-45	NM_008690	18037	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	0.065000	0.666667	
mm_162452.1	chr1	125434497	125434697	-	1	NA	NA	NA	1130	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.035000	0.393035	-71(TCTTTTATAGCC,+,0.00),-63(AGCCTTATAAGG,-,0.00),-61(CCTTATAAGGTA,+,0.00)
mm_73011.1	chr8	93946919	93947119	+	1	NA	NA	NA	65621	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.005000	0.492537	
mm_57047.1	chr6	122344831	122345031	-	1	NA	NA	NA	-4704	NM_001271579	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.010000	0.527363	-77(TGTTCTAAAAGC,-,0.00)
mm_167041.1	chr7	79891003	79891203	+	1	NA	NA	NA	29537	NM_009682	11778	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	0.025000	0.562189	
mm_3068.1	chr1	134183452	134183652	+	1	NA	NA	NA	1148	NM_007695	12654	Mm.38274	NM_007695	ENSMUSG00000064246	Chil1	AW208766|Brp39|Chi3l1|Gp39	chitinase-like 1	protein-coding	0.030000	0.542289	
mm_140094.1	chr17	78200109	78200309	+	1	NA	NA	NA	-39	NM_015800	50766	Mm.311912	NM_015800	ENSMUSG00000024074	Crim1	AU015004	cysteine rich transmembrane BMP regulator 1 (chordin like)	protein-coding	0.120000	0.751244	
mm_123900.1	chr14	73170173	73170373	-	1	NA	NA	NA	27488	NR_033185	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.010000	0.542289	
mm_152657.1	chr19	12795345	12795545	-	1	NA	NA	NA	678	NR_024093	664779	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0.150000	0.830846	
mm_12999.1	chr2	90889830	90890030	+	1	NA	NA	NA	4144	NM_026161	67445	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0.195000	0.776119	
mm_122383.1	chr14	40899188	40899388	-	1	NA	NA	NA	-6323	NM_177816	328381	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.020000	0.522388	
mm_19184.1	chr2	84407483	84407683	-	1	NA	NA	NA	17683	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.000000	0.363184	
mm_74862.1	chr8	24823954	24824154	-	1	NA	NA	NA	315	NM_001272058	11499	Mm.143889	NM_007401	ENSMUSG00000031554	Adam5	tMDC II|tMDCII	a disintegrin and metallopeptidase domain 5	protein-coding	0.035000	0.552239	86(GCATCTTAAAGG,-,0.00)
mm_91403.1	chr10	30842678	30842878	-	1	NA	NA	NA	5	NM_013904	15214	Mm.103573	NM_013904	ENSMUSG00000019789	Hey2	CHF1|Herp1|Hrt2|bHLHb32|hesr2	hairy/enhancer-of-split related with YRPW motif 2	protein-coding	0.120000	0.761194	
mm_24629.1	chr3	93820826	93821026	+	1	NA	NA	NA	-5094	NM_207271	399674	Mm.377923	NM_207271	ENSMUSG00000058005	Tdpoz3	-	TD and POZ domain containing 3	protein-coding	0.000000	0.457711	-32(GCCTATATAAGC,-,0.00)
mm_138630.1	chr17	35854737	35854937	+	1	NA	NA	NA	-6481	NM_134122	106582	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding	0.010000	0.472637	
mm_80617.1	chr9	88390702	88390902	+	1	NA	NA	NA	48149	NM_172926	244962	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0.030000	0.402985	
mm_128683.1	chr15	60824810	60825010	-	1	NA	NA	NA	170	NM_001162926	399603	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	0.090000	0.681592	-34(CTCTTTAAATGC,-,0.00)
mm_156501.1	chrX	144455856	144456056	+	1	NA	NA	NA	-626	NM_001195579	100503240	Mm.387258	NM_001195579	ENSMUSG00000072934	Trpc5os	ENSMUSG00000072934|Gm15070|OTTMUSG00000018931	transient receptor potential cation channel, subfamily C, member 5, opposite strand	protein-coding	0.000000	0.457711	
mm_31286.1	chr4	45890224	45890424	+	1	NA	NA	NA	21	NM_198660	381522	Mm.54220	NM_198660	ENSMUSG00000035539	Ccdc180	E230008N13Rik|Gm1025	coiled-coil domain containing 180	protein-coding	0.040000	0.606965	
mm_114720.1	chr13	83665878	83666078	+	1	NA	NA	NA	-62128	NR_015561	320203	Mm.245636	NM_177100	ENSMUSG00000050334	C130071C03Rik	2810449C10Rik	RIKEN cDNA C130071C03 gene	ncRNA	0.015000	0.378109	
mm_62237.1	chr7	98656824	98657024	+	1	NA	NA	NA	-355	NM_172280	233545	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0.060000	0.552239	
mm_112981.1	chr13	21317128	21317328	+	1	NA	NA	NA	5025	NM_145451	75512	Mm.46195	NM_145451	ENSMUSG00000004341	Gpx6	1700020G18Rik|Ry2d1|olfactory	glutathione peroxidase 6	protein-coding	0.005000	0.457711	
mm_121331.1	chr14	115040183	115040383	+	1	NA	NA	NA	-3388	NR_029785	723905		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0.035000	0.527363	
mm_118576.1	chr14	19750846	19751046	+	1	NA	NA	NA	-311	NM_008695	18074	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.070000	0.666667	
mm_117385.1	chr13	73346836	73347036	-	1	NA	NA	NA	448	NR_045293	432777	Mm.415319	NR_045293		D630045M09Rik	AU019512	RIKEN cDNA D630045M09 gene	ncRNA	0.010000	0.547264	
mm_29637.1	chr3	121814835	121815035	-	1	NA	NA	NA	280	NM_008991	19299	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.160000	0.800995	
mm_57184.1	chr6	122848703	122848903	-	1	NA	NA	NA	7354	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.020000	0.442786	
mm_50292.1	chr6	47454611	47454811	+	1	NA	NA	NA	387	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.135000	0.766169	
mm_91235.1	chr10	22302695	22302895	-	1	NA	NA	NA	-3925	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.005000	0.432836	
mm_13583.1	chr2	112379129	112379329	+	1	NA	NA	NA	18	NM_024254	72425	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	0.105000	0.746269	
mm_32829.1	chr4	117564716	117564916	+	1	NA	NA	NA	14451	NM_080469	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.040000	0.567164	
mm_126526.1	chr15	81972272	81972472	+	1	NA	NA	NA	-8168	NM_025503	66346	Mm.54292	NM_025503	ENSMUSG00000061633	1700029P11Rik	-	RIKEN cDNA 1700029P11 gene	protein-coding	0.020000	0.412935	-75(AGATATAAAAGC,-,0.00)
mm_91395.1	chr10	30771747	30771947	-	1	NA	NA	NA	31260	NM_172495	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.010000	0.328358	
mm_104190.1	chr11	87825840	87826040	-	1	NA	NA	NA	174	NM_080420	76113	Mm.41236	NM_080420	ENSMUSG00000009356	Lpo	5830499B15Rik	lactoperoxidase	protein-coding	0.030000	0.517413	
mm_64892.1	chr7	15945929	15946129	-	1	NA	NA	NA	79	NM_133831	68077	Mm.277634	NM_133831	ENSMUSG00000041560	Gltscr2	5330430H08Rik|9430097C02Rik|AU041936|AW536441|PICT-1|R74911	glioma tumor suppressor candidate region gene 2	protein-coding	0.110000	0.631841	
mm_105201.1	chr11	102097449	102097649	-	1	NA	NA	NA	3751	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.045000	0.557214	
mm_72894.1	chr8	90828731	90828931	+	1	NA	NA	NA	-4	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.075000	0.666667	
mm_95383.1	chr11	49203229	49203429	+	1	NA	NA	NA	-171	NM_001024846	22720	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0.050000	0.552239	
mm_78429.1	chr9	31354228	31354428	+	1	NA	NA	NA	-31864	NM_172766	235134	Mm.238146	NM_172766	ENSMUSG00000042185	Nfrkb	A530090G11Rik	nuclear factor related to kappa B binding protein	protein-coding	0.020000	0.477612	
mm_132060.1	chr16	29843799	29843999	+	1	NA	NA	NA	135225	NR_037689	328657	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.005000	0.388060	
mm_32846.1	chr4	117883461	117883661	+	1	NA	NA	NA	-85	NM_001253381	53418	Mm.123843	NM_017377	ENSMUSG00000028541	B4galt2	Ggtb2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2	protein-coding	0.150000	0.791045	
mm_173042.1	chrX	114981277	114981477	-	1	NA	NA	NA	54388	NR_130989	78086		NR_130989	ENSMUSG00000085619	4930555B12Rik	-	RIKEN cDNA 4930555B12 gene	ncRNA	0.035000	0.417910	
mm_3692.1	chr1	153751918	153752118	+	1	NA	NA	NA	2592	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.010000	0.532338	
mm_149128.1	chr19	8997795	8997995	+	1	NA	NA	NA	8611	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.005000	0.537313	
mm_94966.1	chr11	30855659	30855859	+	1	NA	NA	NA	-29599	NM_175490	237716	Mm.338361	NM_175490	ENSMUSG00000043999	Gpr75	-	G protein-coupled receptor 75	protein-coding	0.010000	0.293532	
mm_71009.1	chr8	31129307	31129507	+	1	NA	NA	NA	17561	NM_175136	68867	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	0.010000	0.447761	
mm_82540.1	chr9	20814959	20815159	-	1	NA	NA	NA	8	NM_001317388	53867	Mm.334994	NM_016919	ENSMUSG00000004098	Col5a3	-	collagen, type V, alpha 3	protein-coding	0.065000	0.701493	
mm_10249.1	chr2	9189452	9189652	+	1	NA	NA	NA	37	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.010000	0.447761	
mm_38989.1	chr4	151062726	151062926	-	1	NA	NA	NA	-4873	NM_009498	22319	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	0.005000	0.422886	
mm_7413.1	chr1	119422165	119422365	-	1	NA	NA	NA	-17	NM_008381	16324	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	0.100000	0.606965	
mm_8554.1	chr1	155232502	155232702	-	1	NA	NA	NA	73899	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.030000	0.557214	-63(TACCATTAAAGC,-,0.00)
mm_10486.1	chr2	14763351	14763551	+	1	NA	NA	NA	42809	NR_028497	625342	Mm.484784	NR_028497		Gm13315	OTTMUSG00000011384	lactate dehydrogenase A pseudogene	pseudo	0.010000	0.462687	
mm_126367.1	chr15	80110365	80110565	+	1	NA	NA	NA	19131	NM_207708	20972	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0.050000	0.552239	
mm_10353.1	chr2	11689912	11690112	+	1	NA	NA	NA	-15281	NM_001271498	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.000000	0.402985	-15(GCTTTAATGGGA,+,0.00)
mm_37649.1	chr4	128786371	128786571	-	1	NA	NA	NA	19641	NM_001081098	230761	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.015000	0.532338	
mm_131312.1	chr16	11615791	11615991	+	1	NA	NA	NA	-163811	NR_126430	73761	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.005000	0.522388	
mm_100137.1	chr11	115974917	115975117	+	1	NA	NA	NA	292	NM_133663	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.140000	0.766169	
mm_64758.1	chr7	4844732	4844932	-	1	NA	NA	NA	-136	NM_172737	232813	Mm.44666	NM_172737	ENSMUSG00000053550	Shisa7	ckamp59	shisa family member 7	protein-coding	0.060000	0.686567	
mm_109597.1	chr12	112674318	112674518	+	1	NA	NA	NA	-142	NM_009652	11651	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.110000	0.761194	
mm_116639.1	chr13	49015387	49015587	-	1	NA	NA	NA	47375	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.025000	0.527363	
mm_9526.1	chr1	173775205	173775405	-	1	NA	NA	NA	-8386	NM_008329	15951	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.005000	0.383085	
mm_36319.1	chr4	70260237	70260437	-	1	NA	NA	NA	150098	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.000000	0.398010	
mm_73501.1	chr8	107293373	107293573	+	1	NA	NA	NA	3	NM_133957	54446	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0.130000	0.751244	
mm_102339.1	chr11	57832045	57832245	-	1	NA	NA	NA	2	NM_008213	15110	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed transcript 1	protein-coding	0.040000	0.616915	
mm_33902.1	chr4	136284613	136284813	+	1	NA	NA	NA	-1356	NM_009557	22704	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	0.010000	0.477612	
mm_87756.1	chr10	60278462	60278662	+	1	NA	NA	NA	934	NM_001146121	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.010000	0.398010	
mm_139766.1	chr17	64601305	64601505	+	1	NA	NA	NA	-244	NM_008549	17158	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.090000	0.636816	
mm_11636.1	chr2	34802264	34802464	+	1	NA	NA	NA	-2452	NM_145522	227746	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.095000	0.592040	
mm_152363.1	chr19	10092111	10092311	-	1	NA	NA	NA	9292	NM_019699	56473	Mm.38901	NM_019699	ENSMUSG00000024665	Fads2	2900042M13Rik|Fadsd2	fatty acid desaturase 2	protein-coding	0.005000	0.487562	
mm_156876.1	chrX	166238675	166238875	+	1	NA	NA	NA	-168	NM_001177961	14758	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	0.040000	0.582090	
mm_158008.1	chrX	95444709	95444909	-	1	NA	NA	NA	31	NM_175179	72345	Mm.182867	NM_175179	ENSMUSG00000050332	Amer1	2810002O09Rik|AW492303|Fam123b|Wtx	APC membrane recruitment 1	protein-coding	0.045000	0.601990	
mm_28143.1	chr3	87263558	87263758	-	1	NA	NA	NA	-134	NM_030707	80891	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	0.025000	0.457711	-86(ATCTATAAAAGG,-,0.00)
mm_12013.1	chr2	57368325	57368525	+	1	NA	NA	NA	130043	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.020000	0.442786	
mm_20331.1	chr2	127521214	127521414	-	1	NA	NA	NA	78	NM_001291005	56461	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0.035000	0.606965	
mm_35800.1	chr4	46566387	46566587	-	1	NA	NA	NA	-47	NM_178893	107684	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.005000	0.487562	
mm_143883.1	chr17	84313525	84313725	-	1	NA	NA	NA	-125678	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.020000	0.437811	
mm_21885.1	chr2	166155083	166155283	-	1	NA	NA	NA	102	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.135000	0.726368	
mm_60219.1	chr7	43553469	43553669	+	1	NA	NA	NA	-8801	NM_001008549	210104	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0.010000	0.437811	
mm_52240.1	chr6	105334389	105334589	+	1	NA	NA	NA	158179	NR_040297	100503536	Mm.366960	NR_040297	ENSMUSG00000108237	Gm19757	-	predicted gene, 19757	ncRNA	0.000000	0.263682	
mm_139479.1	chr17	56009213	56009413	+	1	NA	NA	NA	112	NM_026530	68047	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	0.110000	0.706468	
mm_107893.1	chr12	70466025	70466225	+	1	NA	NA	NA	12971	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0.015000	0.462687	
mm_147091.1	chr18	35648393	35648593	-	1	NA	NA	NA	874	NM_027222	69816	Mm.27252	NM_027222	ENSMUSG00000024353	Mzb1	2010001M09Rik|AV064572|PACAP|pERp1	marginal zone B and B1 cell-specific protein 1	protein-coding	0.000000	0.636816	
mm_73643.1	chr8	110805342	110805542	+	1	NA	NA	NA	482	NM_029646	76527	Mm.77697	NM_029646	ENSMUSG00000031750	Il34	2010004A03Rik|AI593503	interleukin 34	protein-coding	0.010000	0.383085	
mm_10796.1	chr2	24349453	24349653	+	1	NA	NA	NA	4182	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.030000	0.532338	36(CCCCTTATAGTC,+,0.00)
mm_171865.1	chr5	24010324	24010524	-	1	NA	NA	NA	19888	NM_001310471	84652	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.040000	0.462687	
mm_124172.1	chr14	93809724	93809924	-	1	NA	NA	NA	79064	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.388060	
mm_164213.1	chr15	82662200	82662400	-	1	NA	NA	NA	-20255	NR_003552	68444	Mm.443212	NR_003552		Cyp2d13	1300007K12Rik	cytochrome P450, family 2, subfamily d, polypeptide 13	pseudo	0.000000	0.378109	
mm_99955.1	chr11	113061154	113061354	+	1	NA	NA	NA	140584	NR_015556	72386	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.015000	0.537313	-60(TTTTTTATAGTC,+,0.00)
mm_58271.1	chr6	145433903	145434103	-	1	NA	NA	NA	922	NM_028742	74071	Mm.441497	NM_028742	ENSMUSG00000054966	Lmntd1	4933403M22Rik|AI482300|Ifltd1|Lmna-rs1|Lmna1|OTTMUSG00000022798	lamin tail domain containing 1	protein-coding	0.035000	0.477612	
mm_68236.1	chr7	105395468	105395668	-	1	NA	NA	NA	4486	NM_001242364	74349	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	0.000000	0.407960	
mm_96594.1	chr11	69090766	69090966	+	1	NA	NA	NA	2338	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.010000	0.417910	
mm_10058.1	chr1	193263943	193264143	-	1	NA	NA	NA	2	NM_008288	15483	Mm.28328	NM_008288	ENSMUSG00000016194	Hsd11b1	-	hydroxysteroid 11-beta dehydrogenase 1	protein-coding	0.005000	0.482587	
mm_89943.1	chr10	111280222	111280422	+	1	NA	NA	NA	-18357	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.020000	0.363184	
mm_3080.1	chr1	134385841	134386041	+	1	NA	NA	NA	1	NM_173771	240755	Mm.67133	NM_173771	ENSMUSG00000050526	4933406M09Rik	-	RIKEN cDNA 4933406M09 gene	protein-coding	0.000000	0.462687	
mm_93899.1	chr10	125389484	125389684	-	1	NA	NA	NA	-61049	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.085000	0.676617	
mm_106056.1	chr11	116110312	116110512	-	1	NA	NA	NA	-177	NM_172570	217333	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.095000	0.716418	
mm_13034.1	chr2	91054183	91054383	+	1	NA	NA	NA	267	NM_008948	19182	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	0.060000	0.592040	
mm_14492.1	chr2	131936912	131937112	+	1	NA	NA	NA	-13849	NM_001278257	26434	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion protein dublet	protein-coding	0.055000	0.562189	
mm_49314.1	chr6	18335654	18335854	+	1	NA	NA	NA	165067	NM_021050	12638	Mm.15621	NM_021050	ENSMUSG00000041301	Cftr	AW495489|Abcc7	cystic fibrosis transmembrane conductance regulator	protein-coding	0.005000	0.467662	
mm_150896.1	chr19	45472704	45472904	+	1	NA	NA	NA	87760	NM_001330506	56626	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0.025000	0.492537	
mm_35531.1	chr4	41313808	41314008	-	1	NA	NA	NA	993	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.065000	0.552239	
mm_114248.1	chr13	56632819	56633019	+	1	NA	NA	NA	23316	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.015000	0.497512	
mm_39004.1	chr4	151988920	151989120	-	1	NA	NA	NA	-34	NM_001145929	69876	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	0.070000	0.641791	34(TTTTTTAGGGGC,+,0.00)
mm_17935.1	chr2	35979678	35979878	-	1	NA	NA	NA	-154	NM_029774	74410	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0.160000	0.756219	
mm_86658.1	chr10	17724692	17724892	+	1	NA	NA	NA	1564	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.040000	0.467662	
mm_83749.1	chr9	51165338	51165538	-	1	NA	NA	NA	-48252	NM_011136	18985	Mm.897	NM_011136	ENSMUSG00000032053	Pou2af1	BOB.1|Bob-1|Bob1|OBF-1|OBF.1|OCA-B|OCAB	POU domain, class 2, associating factor 1	protein-coding	0.015000	0.517413	
mm_152260.1	chr19	8786315	8786515	-	1	NA	NA	NA	2	NM_001177798	225895	Mm.220886	NM_146092	ENSMUSG00000003680	Taf6l	2810417N14Rik|BB223262|C530024J06Rik|Paf65a	TATA-box binding protein associated factor 6 like	protein-coding	0.050000	0.532338	-35(GCTTTAAGAAGC,+,0.00)
mm_17052.1	chr2	20969167	20969367	-	1	NA	NA	NA	393	NR_033225	433408	Mm.386941	NR_033225		Gm13375	OTTMUSG00000011664	predicted gene 13375	ncRNA	0.085000	0.671642	
mm_48525.1	chr5	142903451	142903651	-	1	NA	NA	NA	3203	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.015000	0.348259	-63(GGATTTAAAAAC,-,0.00),62(TTTTTAATAGTC,+,0.00)
mm_82666.1	chr9	22129819	22130019	-	1	NA	NA	NA	679	NM_007388	11433	Mm.46354	NM_007388	ENSMUSG00000001348	Acp5	TRACP|TRAP	acid phosphatase 5, tartrate resistant	protein-coding	0.040000	0.567164	
mm_150479.1	chr19	38930858	38931058	+	1	NA	NA	NA	-32	NM_008234	15201	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	0.150000	0.696517	
mm_107556.1	chr12	41260956	41261156	+	1	NA	NA	NA	225001	NM_001271708	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.010000	0.462687	
mm_83646.1	chr9	49505294	49505494	-	1	NA	NA	NA	-12894	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.020000	0.487562	
mm_47870.1	chr5	134639444	134639644	-	1	NA	NA	NA	-135	NM_033561	22384	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0.125000	0.766169	
mm_57397.1	chr6	124863611	124863811	-	1	NA	NA	NA	206	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.080000	0.751244	
mm_142046.1	chr17	35516708	35516908	-	1	NA	NA	NA	16	NM_001163764	106795	Mm.11434	NM_025674	ENSMUSG00000050410	Tcf19	5730403J10Rik|AW495861	transcription factor 19	protein-coding	0.145000	0.696517	
mm_36505.1	chr4	83485705	83485905	-	1	NA	NA	NA	643	NM_001290527	101739	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	0.085000	0.611940	
mm_166949.1	chr7	43979055	43979255	+	1	NA	NA	NA	3094	NM_010116	13648	Mm.440884	NM_010116	ENSMUSG00000059042	Klk1b9	EGF-BP C|Egfbp-3|Egfbp3|KAL|Klk9|kallikrein|mGk-9	kallikrein 1-related peptidase b9	protein-coding	0.010000	0.522388	
mm_160150.1	chr7	41499582	41499782	-	1	NA	NA	NA	208	NM_001033530	101835	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	0.035000	0.507463	
mm_42506.1	chr5	115500546	115500746	+	1	NA	NA	NA	-6030	NM_011223	19303	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0.035000	0.497512	
mm_12373.1	chr2	69822376	69822576	+	1	NA	NA	NA	106	NM_177784	277396	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	0.025000	0.532338	
mm_46610.1	chr5	107972772	107972972	-	1	NA	NA	NA	14205	NM_026062	67266	Mm.277897	NM_026062	ENSMUSG00000029270	Fam69a	2900024C23Rik|AI315274	family with sequence similarity 69, member A	protein-coding	0.020000	0.487562	
mm_61263.1	chr7	66079711	66079911	+	1	NA	NA	NA	162	NM_024439	109815	Mm.482127	NM_024439	ENSMUSG00000075701	Selenos	1500011E07Rik|C78786|H-4|H-47|H4|H47|Sels|Vimp	selenoprotein S	protein-coding	0.115000	0.686567	
mm_101311.1	chr11	22779210	22779410	-	1	NA	NA	NA	80425	NM_016888	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.005000	0.412935	-35(CACTAGAAAAGC,-,0.00),66(GTCTTTTTAAAC,-,0.00),68(CTTTTTAAACGC,+,0.00)
mm_153328.1	chr19	38124323	38124523	-	1	NA	NA	NA	388	NM_011255	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.045000	0.552239	
mm_32653.1	chr4	115088685	115088885	+	1	NA	NA	NA	77	NM_001164557	67182	Mm.30181	NM_026018	ENSMUSG00000028716	Pdzk1ip1	0610007F13Rik|2700030M23Rik|AU046042|Map17	PDZK1 interacting protein 1	protein-coding	0.010000	0.562189	
mm_42719.1	chr5	120513013	120513213	+	1	NA	NA	NA	1921	NM_001177594	170756	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.005000	0.597015	
mm_152378.1	chr19	10237866	10238066	-	1	NA	NA	NA	2782	NM_001033481	225908	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.020000	0.577114	
mm_171693.1	chr4	66078631	66078831	+	1	NA	NA	NA	325752	NM_019514	56079	Mm.445312	NM_019514	ENSMUSG00000028373	Astn2	1d8|Astnl|bM452J22.1	astrotactin 2	protein-coding	0.035000	0.592040	
mm_70077.1	chr7	142653172	142653372	-	1	NA	NA	NA	1724	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.005000	0.452736	
mm_60408.1	chr7	44475927	44476127	+	1	NA	NA	NA	5680	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.502488	
mm_151473.1	chr19	58672995	58673195	+	1	NA	NA	NA	2730	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.030000	0.427861	
mm_85780.1	chr9	109058531	109058731	-	1	NA	NA	NA	620	NM_001012236	22040	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	0.035000	0.592040	
mm_56209.1	chr6	89316585	89316785	-	1	NA	NA	NA	-30960	NR_131021	75131	Mm.391482	NR_131021	ENSMUSG00000107622	4930512J16Rik	-	RIKEN cDNA 4930512J16 gene	ncRNA	0.010000	0.532338	
mm_93298.1	chr10	96616550	96616750	-	1	NA	NA	NA	-351	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.080000	0.656716	
mm_34501.1	chr4	148603659	148603859	+	1	NA	NA	NA	1215	NM_001003893	17175	Mm.378962	NM_010767	ENSMUSG00000028979	Masp2	MASP-2|MAp19	mannan-binding lectin serine peptidase 2	protein-coding	0.020000	0.542289	
mm_11842.1	chr2	45117158	45117358	+	1	NA	NA	NA	-3979	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.120000	0.731343	
mm_120920.1	chr14	76427217	76427417	+	1	NA	NA	NA	11496	NM_207652	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.010000	0.353234	
mm_100171.1	chr11	116532324	116532524	+	1	NA	NA	NA	-20	NM_001172472	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.065000	0.636816	
mm_284.1	chr1	21264752	21264952	+	1	NA	NA	NA	24267	NM_010356	14859	Mm.394593	NM_010356	ENSMUSG00000025934	Gsta3	Gst2-3	glutathione S-transferase, alpha 3	protein-coding	0.015000	0.512438	
mm_166211.1	chr5	49760312	49760512	+	1	NA	NA	NA	298584	NM_133911	70693	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding	0.005000	0.338308	
mm_132832.1	chr16	45434754	45434954	+	1	NA	NA	NA	-25801	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.005000	0.432836	
mm_118132.1	chr13	104816777	104816977	-	1	NA	NA	NA	76	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.060000	0.577114	
mm_115706.1	chr13	14522932	14523132	-	1	NA	NA	NA	194	NM_001081348	94253	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.055000	0.592040	
mm_7277.1	chr1	97128226	97128426	-	1	NA	NA	NA	-23	NM_028942	74441	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	0.020000	0.482587	
mm_32952.1	chr4	119619208	119619408	+	1	NA	NA	NA	-18424	NM_008190	14915	Mm.2614	NM_008190	ENSMUSG00000023247	Guca2a	Guca2	guanylate cyclase activator 2a (guanylin)	protein-coding	0.010000	0.422886	
mm_71669.1	chr8	60674265	60674465	+	1	NA	NA	NA	18808	NM_001177882	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	0.005000	0.363184	
mm_102721.1	chr11	67116738	67116938	-	1	NA	NA	NA	3242	NR_038055	74184	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	0.015000	0.497512	
mm_50201.1	chr6	42039993	42040193	+	1	NA	NA	NA	1699	NM_009299	20939	Mm.4119	NM_009299	ENSMUSG00000023289	Sva	-	seminal vesicle antigen	protein-coding	0.015000	0.373134	
mm_17207.1	chr2	25470012	25470212	-	1	NA	NA	NA	-363	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.010000	0.547264	
mm_118296.1	chr13	113079024	113079224	-	1	NA	NA	NA	21857	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.020000	0.472637	
mm_13708.1	chr2	117157500	117157700	+	1	NA	NA	NA	-27527	NR_030440	732489		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.010000	0.348259	-32(GTTTATAGAGGA,+,0.00)
mm_70066.1	chr7	142652323	142652523	-	1	NA	NA	NA	2573	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.010000	0.621891	-45(CGCTTTTTAGGG,-,0.00),-43(CTTTTTAGGGGC,+,0.00)
mm_62908.1	chr7	117390041	117390241	+	1	NA	NA	NA	9162	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.005000	0.402985	
mm_24249.1	chr3	89164727	89164927	+	1	NA	NA	NA	32	NM_001163432	12748	Mm.288098	NM_007712	ENSMUSG00000068917	Clk2	AU041688	CDC-like kinase 2	protein-coding	0.145000	0.771144	
mm_80927.1	chr9	102172648	102172848	+	1	NA	NA	NA	132227	NR_106163	102466241		NR_106163	ENSMUSG00000098521	Mir7243	Gm27363|mmu-mir-7243	microRNA 7243	ncRNA	0.000000	0.432836	-47(TGCCATATAAGA,-,0.00)
mm_48168.1	chr5	137152994	137153194	-	1	NA	NA	NA	-36887	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.015000	0.527363	
mm_80498.1	chr9	78503848	78504048	+	1	NA	NA	NA	-22224	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.010000	0.512438	
mm_164122.1	chr15	38322106	38322306	+	1	NA	NA	NA	-21495	NM_001289471	21847	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.005000	0.482587	
mm_22521.1	chr3	7644488	7644688	+	1	NA	NA	NA	-30828	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.005000	0.353234	78(TTTTATATAGTC,+,0.00)
mm_153398.1	chr19	40487480	40487680	-	1	NA	NA	NA	26156	NM_178362	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.025000	0.437811	
mm_33555.1	chr4	130935959	130936159	+	1	NA	NA	NA	-8326	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.005000	0.512438	
mm_12170.1	chr2	62646199	62646399	+	1	NA	NA	NA	-44	NM_001164477	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.050000	0.512438	
mm_33699.1	chr4	133584323	133584523	+	1	NA	NA	NA	50	NM_133884	100210	Mm.274001	NM_133884	ENSMUSG00000028848	Gpn2	AI838661|Atpbd1b|R74630	GPN-loop GTPase 2	protein-coding	0.080000	0.636816	
mm_124424.1	chr14	118211575	118211775	-	1	NA	NA	NA	-24557	NR_131969	105245869	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	0.020000	0.532338	
mm_78034.1	chr9	13827723	13827923	+	1	NA	NA	NA	96	NM_176836	72826	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0.135000	0.746269	
mm_35240.1	chr4	19877205	19877405	-	1	NA	NA	NA	45261	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.005000	0.383085	
mm_104583.1	chr11	96977209	96977409	-	1	NA	NA	NA	379	NM_030220	78912	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.115000	0.771144	
mm_95558.1	chr11	52311080	52311280	+	1	NA	NA	NA	-28166	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.000000	0.497512	
mm_65029.1	chr7	18521021	18521221	-	1	NA	NA	NA	11106	NM_054060	114868	Mm.389809	NM_054060	ENSMUSG00000070798	Psg25	cea13	pregnancy-specific glycoprotein 25	protein-coding	0.005000	0.512438	
mm_53987.1	chr6	6871436	6871636	-	1	NA	NA	NA	-2003	NR_015388	320038	Mm.94021	NR_015388		Dlx6os1	A230055N17Rik|Dlx6as1|Evf-1|Evf-2|Evf1|Evf1/2|Evf2|Shhrs|mEvf-1	distal-less homeobox 6, opposite strand 1	ncRNA	0.015000	0.417910	
mm_63149.1	chr7	123369667	123369867	+	1	NA	NA	NA	148	NM_001122643	70497	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.155000	0.771144	
mm_23617.1	chr3	65666141	65666341	+	1	NA	NA	NA	13	NM_001166659	624866	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	0.100000	0.646766	
mm_127451.1	chr15	101270657	101270857	+	1	NA	NA	NA	3911	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.030000	0.621891	
mm_94596.1	chr11	11809423	11809623	+	1	NA	NA	NA	-561	NM_001163360	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.025000	0.467662	
mm_30637.1	chr4	8811252	8811452	+	1	NA	NA	NA	120946	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.040000	0.547264	
mm_159386.1	chr3	91090703	91090903	-	1	NA	NA	NA	2	NM_001101461	229550	Mm.98335	NM_001101461	ENSMUSG00000091175	9130204L05Rik	Gm127	RIKEN cDNA 9130204L05 gene	protein-coding	0.005000	0.457711	-34(ACCTATAAATGA,-,0.00)
mm_102782.1	chr11	68400374	68400574	-	1	NA	NA	NA	-13648	NM_008744	18208	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0.090000	0.686567	
mm_48887.1	chr5	151233927	151234127	-	1	NA	NA	NA	-43834	NM_146258	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.030000	0.517413	
mm_103685.1	chr11	79482292	79482492	-	1	NA	NA	NA	1639	NR_045305	104522	Mm.436987	NR_045305	ENSMUSG00000091523	AU040972	AU040954	expressed sequence AU040972	ncRNA	0.005000	0.348259	
mm_87017.1	chr10	26917340	26917540	+	1	NA	NA	NA	144928	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.000000	0.333333	5(GCTTTAAGACAC,+,0.00)
mm_164600.1	chr17	28952589	28952789	+	1	NA	NA	NA	-527	NM_025888	66989	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	0.105000	0.726368	
mm_140372.1	chr17	86964219	86964419	+	1	NA	NA	NA	1208	NM_145491	104215	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.020000	0.567164	
mm_77837.1	chr9	5298582	5298782	+	1	NA	NA	NA	165	NM_009807	12362	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.025000	0.388060	
mm_92147.1	chr10	67096751	67096951	-	1	NA	NA	NA	137	NM_001204915	28193	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.150000	0.766169	
mm_12217.1	chr2	67601959	67602159	+	1	NA	NA	NA	-73398	NR_106083	102465706		NR_106083	ENSMUSG00000098299	Mir7224	Gm27971|mmu-mir-7224	microRNA 7224	ncRNA	0.005000	0.393035	
mm_57530.1	chr6	126535271	126535471	-	1	NA	NA	NA	184	NM_145983	16493	Mm.222831	NM_145983	ENSMUSG00000045534	Kcna5	Kv1.5	potassium voltage-gated channel, shaker-related subfamily, member 5	protein-coding	0.015000	0.631841	
mm_92225.1	chr10	68320982	68321182	-	1	NA	NA	NA	60	NR_045357	75148	Mm.23505	NR_045357		4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	0.010000	0.472637	
mm_40248.1	chr5	38076468	38076668	+	1	NA	NA	NA	37338	NM_026959	71116	Mm.18959	NM_026959	ENSMUSG00000029125	Stx18	1810035L21Rik|4933425D03Rik|AU041562	syntaxin 18	protein-coding	0.020000	0.467662	
mm_127163.1	chr15	98634931	98635131	+	1	NA	NA	NA	264	NM_001286226	12297	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0.150000	0.776119	
mm_90235.1	chr10	121381075	121381275	+	1	NA	NA	NA	16085	NM_029364	75612	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.040000	0.562189	
mm_109813.1	chr12	3426641	3426841	-	1	NA	NA	NA	6	NR_030694	100043040	Mm.415417	NR_030694	ENSMUSG00000071456	1110002L01Rik	-	RIKEN cDNA 1110002L01 gene	ncRNA	0.125000	0.686567	
mm_130575.1	chr15	99499405	99499605	-	1	NA	NA	NA	-24775	NM_029236	75284	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	0.005000	0.532338	
mm_137787.1	chr17	29614692	29614892	+	1	NA	NA	NA	3	NM_021419	58230	Mm.305994	NM_021419	ENSMUSG00000090083	Rnf8	3830404E21Rik|AIP37|laXp180	ring finger protein 8	protein-coding	0.110000	0.621891	
mm_80463.1	chr9	78109137	78109337	+	1	NA	NA	NA	45	NM_001163780	56542	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	0.035000	0.482587	
mm_120888.1	chr14	75455877	75456077	+	1	NA	NA	NA	-5	NM_001128093	380918	Mm.484360	NM_001128093	ENSMUSG00000091722	Siah3	Gm912	seven in absentia homolog 3 (Drosophila)	protein-coding	0.040000	0.512438	
mm_33586.1	chr4	132553274	132553474	+	1	NA	NA	NA	-10693	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.025000	0.447761	
mm_99249.1	chr11	101082622	101082822	+	1	NA	NA	NA	157	NM_001305982	71743	Mm.182271	NM_027896	ENSMUSG00000001755	Coasy	1300003G02Rik|Dpck|Ppat|Ukr1	Coenzyme A synthase	protein-coding	0.060000	0.611940	
mm_11431.1	chr2	31962089	31962289	+	1	NA	NA	NA	11886	NM_145144	108897	Mm.24838	NM_145144	ENSMUSG00000001864	Aif1l	2810003C17Rik|AI043124|C87647|Iba2	allograft inflammatory factor 1-like	protein-coding	0.010000	0.537313	
mm_92641.1	chr10	80348345	80348545	-	1	NA	NA	NA	3	NM_001285435	66548	Mm.71891	NM_025629	ENSMUSG00000043822	Adamtsl5	2010109H09Rik|Thsd6	ADAMTS-like 5	protein-coding	0.095000	0.711443	
mm_77241.1	chr8	115705171	115705371	-	1	NA	NA	NA	1623	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.005000	0.383085	
mm_162541.1	chr1	169930015	169930215	+	1	NA	NA	NA	196	NM_001347138	78465	Mm.291078	NM_001033185	ENSMUSG00000070532	Ccdc190	1700084C01Rik	coiled-coil domain containing 190	protein-coding	0.015000	0.537313	
mm_79794.1	chr9	64084813	64085013	+	1	NA	NA	NA	4152	NR_040743	76814	Mm.243771	NR_040743		Scarletltr	2600006L11Rik	Scarletltr, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.125000	0.761194	
mm_92381.1	chr10	76442588	76442788	-	1	NA	NA	NA	224	NM_008787	18541	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	0.105000	0.681592	
mm_8863.1	chr1	162740446	162740646	-	1	NA	NA	NA	10	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.090000	0.626866	
mm_104767.1	chr11	98508781	98508981	-	1	NA	NA	NA	37150	NM_011771	22780	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.005000	0.398010	
mm_39971.1	chr5	32192325	32192525	+	1	NA	NA	NA	-40283	NM_030072	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0.010000	0.542289	
mm_22775.1	chr3	20275351	20275551	+	1	NA	NA	NA	282	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.020000	0.378109	
mm_10583.1	chr2	18172175	18172375	+	1	NA	NA	NA	107690	NM_001252561	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.005000	0.412935	
mm_89558.1	chr10	95265102	95265302	+	1	NA	NA	NA	58507	NM_001330138	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.030000	0.472637	
mm_114019.1	chr13	52618573	52618773	+	1	NA	NA	NA	21791	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.010000	0.522388	
mm_154201.1	chr19	58991624	58991824	-	1	NA	NA	NA	-48052	NM_001327998	73442	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0.005000	0.492537	
mm_87480.1	chr10	51493581	51493781	+	1	NA	NA	NA	2783	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.457711	
mm_237.1	chr1	19208889	19209089	+	1	NA	NA	NA	75	NM_001286340	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.065000	0.507463	
mm_7548.1	chr1	124507647	124507847	-	1	NA	NA	NA	-462188	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.442786	
mm_2405.1	chr1	93755084	93755284	+	1	NA	NA	NA	151	NM_174874	66615	Mm.29087	NM_174874	ENSMUSG00000026280	Atg4b	2510009N07Rik|AW048066|Apg4b|Atg4bl|Autl1	autophagy related 4B, cysteine peptidase	protein-coding	0.140000	0.800995	
mm_118290.1	chr13	113046222	113046422	-	1	NA	NA	NA	66	NM_027127	69590	Mm.12715	NM_027127	ENSMUSG00000021760	Gpx8	2310016C16Rik|AU017063	glutathione peroxidase 8 (putative)	protein-coding	0.030000	0.487562	
mm_145601.1	chr18	61045208	61045408	+	1	NA	NA	NA	158	NM_008809	18596	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.035000	0.616915	
mm_11165.1	chr2	28557688	28557888	+	1	NA	NA	NA	5615	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.010000	0.572139	
mm_22232.1	chr2	174437675	174437875	-	1	NA	NA	NA	1264	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.025000	0.517413	
mm_78622.1	chr9	38470217	38470417	+	1	NA	NA	NA	-2432	NM_146804	258800	Mm.377697	NM_146804	ENSMUSG00000096794	Olfr905	MOR167-1	olfactory receptor 905	protein-coding	0.005000	0.318408	
mm_37769.1	chr4	129742194	129742394	-	1	NA	NA	NA	9	NM_011317	20218	Mm.8256	NM_011317	ENSMUSG00000028790	Khdrbs1	Sam68|p62|p68	KH domain containing, RNA binding, signal transduction associated 1	protein-coding	0.145000	0.706468	
mm_39274.1	chr5	3805960	3806160	+	1	NA	NA	NA	2879	NR_033173	79264	Mm.32368	NM_030675	ENSMUSG00000000600	Krit1	2010007K12Rik|A630036P20Rik|AA432855|AI450393|AI643869|BB155247|BB235701|Ccm1	KRIT1, ankyrin repeat containing	protein-coding	0.000000	0.328358	
mm_62324.1	chr7	100372306	100372506	+	1	NA	NA	NA	173	NM_001017985	277939	Mm.276374	NM_001017985	ENSMUSG00000047248	C2cd3	AU020772	C2 calcium-dependent domain containing 3	protein-coding	0.085000	0.631841	
mm_40511.1	chr5	57785892	57786092	+	1	NA	NA	NA	67911	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.015000	0.412935	
mm_101960.1	chr11	50300835	50301035	-	1	NA	NA	NA	-8599	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.010000	0.472637	
mm_141771.1	chr17	34283597	34283797	-	1	NA	NA	NA	4074	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.025000	0.482587	
mm_150075.1	chr19	29386778	29386978	+	1	NA	NA	NA	19440	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.393035	
mm_87472.1	chr10	51491858	51492058	+	1	NA	NA	NA	1060	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.467662	
mm_15169.1	chr2	154013619	154013819	+	1	NA	NA	NA	5443	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.015000	0.452736	
mm_84627.1	chr9	70657142	70657342	-	1	NA	NA	NA	-68	NM_172772	235461	Mm.170855	NM_172772	ENSMUSG00000042444	Fam63b	AI465301|B230380D07Rik|mKIAA1164	family with sequence similarity 63, member B	protein-coding	0.160000	0.776119	
mm_122887.1	chr14	54946906	54947106	-	1	NA	NA	NA	2136	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.040000	0.572139	
mm_117647.1	chr13	92755059	92755259	-	1	NA	NA	NA	39659	NM_011582	21828	Mm.20865	NM_011582	ENSMUSG00000021702	Thbs4	TSP4	thrombospondin 4	protein-coding	0.020000	0.477612	
mm_19310.1	chr2	90540709	90540909	-	1	NA	NA	NA	39838	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.005000	0.398010	
mm_121764.1	chr14	19823684	19823884	-	1	NA	NA	NA	39	NM_026528	68045	Mm.21932	NM_026528	ENSMUSG00000021807	2700060E02Rik	-	RIKEN cDNA 2700060E02 gene	protein-coding	0.150000	0.731343	
mm_29606.1	chr3	121249866	121250066	-	1	NA	NA	NA	13350	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0.025000	0.477612	
mm_49291.1	chr6	17693513	17693713	+	1	NA	NA	NA	-381	NM_001289624	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.015000	0.417910	
mm_74561.1	chr8	11006144	11006344	-	1	NA	NA	NA	-1606	NR_046017	619321	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0.030000	0.606965	
mm_53242.1	chr6	127561124	127561324	+	1	NA	NA	NA	-16751	NM_001033464	381812	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0.060000	0.646766	
mm_136621.1	chr17	5497361	5497561	+	1	NA	NA	NA	4861	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.010000	0.522388	71(GAGCCTTTAAGG,-,0.00),73(GCCTTTAAGGAG,+,0.00),74(CCTTTAAGGAGC,+,0.00)
mm_151950.1	chr19	5801125	5801325	-	1	NA	NA	NA	1447	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.030000	0.562189	
mm_36266.1	chr4	63604987	63605187	-	1	NA	NA	NA	174	NR_028583	670833	Mm.32213	NR_028583	ENSMUSG00000084782	Gm11213	OTTMUSG00000000252	predicted gene 11213	ncRNA	0.005000	0.507463	
mm_49565.1	chr6	30610935	30611135	+	1	NA	NA	NA	25	NM_144537	74649	Mm.159276	NM_144537	ENSMUSG00000029788	Cpa5	4930430M09Rik	carboxypeptidase A5	protein-coding	0.025000	0.417910	
mm_149967.1	chr19	29047432	29047632	+	1	NA	NA	NA	49	NR_028360	67329	Mm.394933	NR_028360		1700018L02Rik	-	RIKEN cDNA 1700018L02 gene	ncRNA	0.075000	0.621891	
mm_6409.1	chr1	72874155	72874355	-	1	NA	NA	NA	610	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.025000	0.507463	23(AGATTTAAAAGG,-,0.00)
mm_138285.1	chr17	34612512	34612712	+	1	NA	NA	NA	3359	NM_152922	81701	Mm.231343	NM_152922	ENSMUSG00000015467	Egfl8	Ng3	EGF-like domain 8	protein-coding	0.010000	0.542289	
mm_13417.1	chr2	104122722	104122922	+	1	NA	NA	NA	53	NM_026634	68243	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0.120000	0.691542	
mm_47602.1	chr5	125042946	125043146	-	1	NA	NA	NA	39571	NM_028443	73121	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.015000	0.621891	
mm_104403.1	chr11	94521211	94521411	-	1	NA	NA	NA	191	NM_170671	104601	Mm.84725	NM_170671	ENSMUSG00000039110	Mycbpap	4932408B01Rik|AMAP-1|AW125474	MYCBP associated protein	protein-coding	0.105000	0.671642	
mm_126556.1	chr15	82147285	82147485	+	1	NA	NA	NA	116	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.090000	0.686567	
mm_1963.1	chr1	86473448	86473648	+	1	NA	NA	NA	47219	NM_027966	71863	Mm.179627	NM_027966	ENSMUSG00000036574	1700019O17Rik	-	RIKEN cDNA 1700019O17 gene	protein-coding	0.055000	0.557214	
mm_52175.1	chr6	99262789	99262989	+	1	NA	NA	NA	3626	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.005000	0.363184	
mm_14207.1	chr2	127258518	127258718	+	1	NA	NA	NA	10643	NM_175145	69470	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	0.005000	0.482587	
mm_146740.1	chr18	15403563	15403763	-	1	NA	NA	NA	95	NM_001317729	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.020000	0.562189	
mm_119156.1	chr14	31575427	31575627	+	1	NA	NA	NA	1856	NM_009937	382864	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.025000	0.502488	
mm_31584.1	chr4	57792284	57792484	+	1	NA	NA	NA	-52864	NM_009649	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.005000	0.358209	
mm_74322.1	chr8	126854575	126854775	+	1	NA	NA	NA	91246	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.025000	0.482587	
mm_144064.1	chr17	90834138	90834338	-	1	NA	NA	NA	-26931	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA	0.000000	0.233831	
mm_110981.1	chr12	77060096	77060296	-	1	NA	NA	NA	-97948	NM_001146176	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.025000	0.582090	
mm_92559.1	chr10	79807023	79807223	-	1	NA	NA	NA	13551	NM_001161747	18483	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0.025000	0.606965	
mm_105879.1	chr11	114927999	114928199	-	1	NA	NA	NA	6287	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.025000	0.592040	
mm_170543.1	chr19	40119679	40119879	+	1	NA	NA	NA	30100	NM_001167875	107141	Mm.474575	NM_134144	ENSMUSG00000054827	Cyp2c50	AI266900	cytochrome P450, family 2, subfamily c, polypeptide 50	protein-coding	0.040000	0.452736	
mm_158783.1	chrX	167207237	167207437	-	1	NA	NA	NA	1881	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.000000	0.457711	
mm_23765.1	chr3	73310514	73310714	+	1	NA	NA	NA	171037	NR_040547	74693	Mm.292227	NR_040547	ENSMUSG00000102362	4930509J09Rik	-	RIKEN cDNA 4930509J09 gene	ncRNA	0.000000	0.353234	
mm_169236.1	chr1	37205857	37206057	+	1	NA	NA	NA	-12321	NM_001282010	12790	Mm.214224	NM_009918	ENSMUSG00000026114	Cnga3	CNG3	cyclic nucleotide gated channel alpha 3	protein-coding	0.020000	0.522388	-13(TCCTTTATAAGA,-,0.00)
mm_151486.1	chr19	58677093	58677293	+	1	NA	NA	NA	6828	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.025000	0.462687	
mm_87541.1	chr10	53596749	53596949	+	1	NA	NA	NA	-112	NM_025541	66403	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0.100000	0.701493	
mm_141665.1	chr17	33799231	33799431	-	1	NA	NA	NA	-11192	NM_030697	80880	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	0.000000	0.452736	-27(CTCCATTTAAAG,-,0.00),-25(CCATTTAAAGTT,+,0.00)
mm_126077.1	chr15	77733532	77733732	+	1	NA	NA	NA	4511	NM_001168660	71898	Mm.422856	NM_173743	ENSMUSG00000068246	Apol9b	2310016F22Rik	apolipoprotein L 9b	protein-coding	0.025000	0.487562	
mm_114345.1	chr13	60902035	60902235	+	1	NA	NA	NA	2712	NM_026429	116913	Mm.443229	NM_026429	ENSMUSG00000062705	Tpbpb	1600012N09Rik	trophoblast specific protein beta	protein-coding	0.010000	0.373134	
mm_84564.1	chr9	68558507	68558707	-	1	NA	NA	NA	-38407	NR_040737	74951	Mm.60678	NR_040737	ENSMUSG00000111303	4930502A04Rik	-	RIKEN cDNA 4930502A04 gene	ncRNA	0.000000	0.338308	53(TTCTCTAAAAGC,-,0.00)
mm_89348.1	chr10	88146916	88147116	+	1	NA	NA	NA	24	NM_027191	69736	Mm.222184	NM_027191	ENSMUSG00000035351	Nup37	2410003L22Rik|2810039M17Rik	nucleoporin 37	protein-coding	0.110000	0.666667	
mm_41924.1	chr5	105620942	105621142	+	1	NA	NA	NA	-78927	NM_001122768	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.005000	0.497512	
mm_138636.1	chr17	35861262	35861462	+	1	NA	NA	NA	44	NM_134122	106582	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding	0.100000	0.716418	
mm_10731.1	chr2	22914573	22914773	+	1	NA	NA	NA	19151	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.010000	0.472637	
mm_141557.1	chr17	32213611	32213811	-	1	NA	NA	NA	-24162	NM_001347341	71932	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9	epoxide hydrolase 3	protein-coding	0.010000	0.432836	
mm_30640.1	chr4	8821676	8821876	+	1	NA	NA	NA	131370	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.020000	0.477612	
mm_6838.1	chr1	84232906	84233106	-	1	NA	NA	NA	-14045	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.577114	
mm_43297.1	chr5	134582658	134582858	+	1	NA	NA	NA	68	NM_020022	19718	Mm.332739	NM_020022	ENSMUSG00000023104	Rfc2	2610008M13Rik|40kDa|AI326953|Recc2	replication factor C (activator 1) 2	protein-coding	0.075000	0.646766	
mm_78414.1	chr9	30942444	30942644	+	1	NA	NA	NA	-18	NM_013906	30806	Mm.100582	NM_013906	ENSMUSG00000031994	Adamts8	METH-2|METH2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 8	protein-coding	0.105000	0.621891	
mm_77033.1	chr8	109565520	109565720	-	1	NA	NA	NA	-19	NM_178380	64340	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|Prp16|mKIAA0224	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	0.090000	0.601990	
mm_156019.1	chrX	107148834	107149034	+	1	NA	NA	NA	7	NM_001122596	213438	Mm.265244	NM_175442	ENSMUSG00000054293	A630033H20Rik	AI662791|P2ry10	RIKEN cDNA A630033H20 gene	protein-coding	0.015000	0.402985	
mm_126165.1	chr15	78493776	78493976	+	1	NA	NA	NA	1190	NM_008368	16185	Mm.35287	NM_008368	ENSMUSG00000068227	Il2rb	CD122|IL-15Rbeta|IL15Rbeta|Il-2/15Rbeta|Il-2Rbeta|p70	interleukin 2 receptor, beta chain	protein-coding	0.015000	0.542289	
mm_34885.1	chr4	155587814	155588014	+	1	NA	NA	NA	-13502	NM_177186	320541	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	0.050000	0.636816	
mm_67141.1	chr7	73310850	73311050	-	1	NA	NA	NA	570	NR_105062	100505025	Mm.445959	NR_105062	ENSMUSG00000108530	LOC100505025	-	uncharacterized LOC100505025	ncRNA	0.015000	0.517413	
mm_20501.1	chr2	130424168	130424368	-	1	NA	NA	NA	20	NM_178762	319513	Mm.482539	NM_178762	ENSMUSG00000037773	Pced1a	A930025D01Rik|AI480484|Fam113a	PC-esterase domain containing 1A	protein-coding	0.100000	0.661692	
mm_58591.1	chr7	5015388	5015588	+	1	NA	NA	NA	-20	NM_025324	66056	Mm.19974	NM_025324	ENSMUSG00000051184	Zfp524	0610012F07Rik|2300009P13Rik|Znf524	zinc finger protein 524	protein-coding	0.125000	0.771144	
mm_79383.1	chr9	54772773	54772973	+	1	NA	NA	NA	8125	NM_013496	12903	Mm.34797	NM_013496	ENSMUSG00000032291	Crabp1	AI326249|CRABP-I|Crabp-1|CrabpI|Rbp-5	cellular retinoic acid binding protein I	protein-coding	0.030000	0.517413	
mm_127893.1	chr15	9155290	9155490	-	1	NA	NA	NA	35	NM_001285980	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.010000	0.472637	-67(CTGTTTAAAAGG,-,0.00)
mm_14228.1	chr2	127483530	127483730	+	1	NA	NA	NA	-1131	NM_001111331	56461	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0.025000	0.552239	27(CGTTTTATAGAC,+,0.00)
mm_11627.1	chr2	34775071	34775271	+	1	NA	NA	NA	3081	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.015000	0.417910	
mm_97515.1	chr11	78499669	78499869	+	1	NA	NA	NA	649	NM_011707	22370	Mm.3667	NM_011707	ENSMUSG00000017344	Vtn	AI256434|Vn	vitronectin	protein-coding	0.060000	0.562189	
mm_156577.1	chrX	152016377	152016577	+	1	NA	NA	NA	49	NM_019710	24061	Mm.482095	NM_019710	ENSMUSG00000041133	Smc1a	5830426I24Rik|SMC-1A|Sb1.8|Smc1|Smc1alpha|Smc1l1|Smcb|mKIAA0178	structural maintenance of chromosomes 1A	protein-coding	0.085000	0.537313	
mm_122969.1	chr14	54974148	54974348	-	1	NA	NA	NA	1528	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.005000	0.472637	
mm_125476.1	chr15	54571096	54571296	+	1	NA	NA	NA	-170	NM_178920	105853	Mm.410994	NM_178920	ENSMUSG00000024479	Mal2	AI461653	mal, T cell differentiation protein 2	protein-coding	0.020000	0.606965	
mm_89810.1	chr10	103367561	103367761	+	1	NA	NA	NA	-147	NM_001252330	103098	Mm.458408	NM_175328	ENSMUSG00000019894	Slc6a15	AA536730|AI326450|AI326451|v7-3	solute carrier family 6 (neurotransmitter transporter), member 15	protein-coding	0.090000	0.711443	
mm_30661.1	chr4	9770557	9770757	+	1	NA	NA	NA	72	NR_030693	320152	Mm.159946	NR_030693		4930412C18Rik	5730591J02Rik	RIKEN cDNA 4930412C18 gene	ncRNA	0.070000	0.587065	
mm_43956.1	chr5	145233083	145233283	+	1	NA	NA	NA	1424	NM_028298	72611	Mm.206555	NM_028298	ENSMUSG00000007812	Zfp655	2700038I16Rik|9030409O18Rik|mKIAA4222	zinc finger protein 655	protein-coding	0.005000	0.462687	-8(TTTTTTAAAGTC,+,0.00)
mm_166318.1	chr5	110447868	110448068	+	1	NA	NA	NA	535	NM_001317042	381668	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.115000	0.711443	
mm_34006.1	chr4	137939272	137939472	+	1	NA	NA	NA	-54084	NM_001256198	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.015000	0.512438	
mm_47345.1	chr5	122560610	122560810	-	1	NA	NA	NA	53808	NM_009879	12589	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	0.010000	0.472637	
mm_34732.1	chr4	152185974	152186174	+	1	NA	NA	NA	-60	NM_001146057	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.045000	0.606965	
mm_71776.1	chr8	66471425	66471625	+	1	NA	NA	NA	14982	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.000000	0.343284	
mm_112982.1	chr13	21317158	21317358	+	1	NA	NA	NA	5055	NM_145451	75512	Mm.46195	NM_145451	ENSMUSG00000004341	Gpx6	1700020G18Rik|Ry2d1|olfactory	glutathione peroxidase 6	protein-coding	0.005000	0.447761	
mm_172587.1	chr8	123961492	123961692	-	1	NA	NA	NA	-12327	NM_172288	234865	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	0.000000	0.477612	
mm_88590.1	chr10	79716527	79716727	+	1	NA	NA	NA	-7	NM_008226	15166	Mm.12956	NM_008226	ENSMUSG00000020331	Hcn2	BCNG2|HAC1|trls	hyperpolarization-activated, cyclic nucleotide-gated K+ 2	protein-coding	0.155000	0.825871	
mm_99030.1	chr11	98943389	98943589	+	1	NA	NA	NA	3778	NM_001177303	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.015000	0.592040	
mm_105802.1	chr11	110190677	110190877	-	1	NA	NA	NA	-22624	NM_147220	217262	Mm.291459	NM_147220	ENSMUSG00000041797	Abca9	D630040K07Rik	ATP-binding cassette, sub-family A (ABC1), member 9	protein-coding	0.000000	0.368159	
mm_57260.1	chr6	123285369	123285569	-	1	NA	NA	NA	4402	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.422886	
mm_108128.1	chr12	76005129	76005329	+	1	NA	NA	NA	96126	NR_039560	100628610		NR_039560	ENSMUSG00000092922	Mir5101	mmu-mir-5101|mu-mir-5101	microRNA 5101	ncRNA	0.020000	0.522388	
mm_170336.1	chr18	45161584	45161784	+	1	NA	NA	NA	-107176	NM_001312905	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.005000	0.373134	
mm_13153.1	chr2	92422776	92422976	+	1	NA	NA	NA	11193	NM_009963	12953	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	0.030000	0.582090	
mm_172043.1	chr6	127561211	127561411	+	1	NA	NA	NA	-16664	NM_001033464	381812	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0.075000	0.651741	
mm_39278.1	chr5	3909216	3909416	+	1	NA	NA	NA	-15383	NM_172135	545725	Mm.99593	NM_172135	ENSMUSG00000040429	Mterf1a	4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b	mitochondrial transcription termination factor 1a	protein-coding	0.005000	0.343284	
mm_47326.1	chr5	122486199	122486399	-	1	NA	NA	NA	15926	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.005000	0.432836	
mm_48935.1	chr6	4537900	4538100	+	1	NA	NA	NA	32382	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.025000	0.487562	
mm_154700.1	chrX	8271379	8271579	+	1	NA	NA	NA	98	NM_172479	209837	Mm.6055	NM_172479	ENSMUSG00000031170	Slc38a5	C81234|E330031E14|JM24|SN2	solute carrier family 38, member 5	protein-coding	0.025000	0.522388	
mm_65353.1	chr7	24998616	24998816	-	1	NA	NA	NA	7221	NM_001290469	232975	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.035000	0.567164	
mm_85198.1	chr9	96732124	96732324	-	1	NA	NA	NA	-549	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.035000	0.527363	-34(CCGCATTTAAGG,-,0.00),-32(GCATTTAAGGTG,+,0.00)
mm_91549.1	chr10	39752809	39753009	-	1	NA	NA	NA	20749	NM_011264	19714	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	0.030000	0.507463	-41(CCATTAAAAGAA,+,0.00)
mm_48037.1	chr5	136302406	136302606	-	1	NA	NA	NA	-57566	NM_018825	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.010000	0.492537	
mm_85421.1	chr9	103480270	103480470	-	1	NA	NA	NA	-42	NM_001002896	107993	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding	0.020000	0.592040	
mm_52356.1	chr6	112459632	112459832	+	1	NA	NA	NA	227	NM_007617	12391	Mm.3924	NM_007617	ENSMUSG00000062694	Cav3	AI385751|Cav-3|M-cav	caveolin 3	protein-coding	0.040000	0.582090	
mm_53377.1	chr6	129486495	129486695	+	1	NA	NA	NA	-13816	NR_132130	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.005000	0.333333	
mm_37644.1	chr4	128618485	128618685	-	1	NA	NA	NA	34	NM_205823	384059	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0.035000	0.577114	
mm_38741.1	chr4	145254348	145254548	-	1	NA	NA	NA	-7578	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.020000	0.492537	
mm_37701.1	chr4	129374206	129374406	-	1	NA	NA	NA	3722	NM_028603	73680	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	0.030000	0.417910	
mm_116710.1	chr13	51567662	51567862	-	1	NA	NA	NA	-678	NM_009167	20418	Mm.131870	NM_009167	ENSMUSG00000021448	Shc3	N-Shc|Rai|ShcC	src homology 2 domain-containing transforming protein C3	protein-coding	0.055000	0.562189	
mm_143817.1	chr17	83846636	83846836	-	1	NA	NA	NA	54	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.055000	0.562189	
mm_168084.1	chr10	12385974	12386174	+	1	NA	NA	NA	475661	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.060000	0.671642	
mm_12354.1	chr2	69749477	69749677	+	1	NA	NA	NA	26489	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.015000	0.442786	
mm_27056.1	chr3	27556061	27556261	-	1	NA	NA	NA	28834	NR_037275	100526525		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.000000	0.407960	
mm_60142.1	chr7	38183151	38183351	+	1	NA	NA	NA	34	NM_001085385	72244	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0.015000	0.552239	
mm_117710.1	chr13	95222963	95223163	-	1	NA	NA	NA	-13	NM_001170669	218461	Mm.100167	NM_172263	ENSMUSG00000021684	Pde8b	B230331L10Rik|C030047E14Rik	phosphodiesterase 8B	protein-coding	0.165000	0.810945	
mm_23666.1	chr3	68496021	68496221	+	1	NA	NA	NA	1940	NM_001282044	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.010000	0.363184	24(GACTTTAAAAGA,-,0.00)
mm_84850.1	chr9	78478958	78479158	-	1	NA	NA	NA	2666	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.025000	0.507463	
mm_107814.1	chr12	65225389	65225589	+	1	NA	NA	NA	-28	NM_027614	70948	Mm.219475	NM_027614	ENSMUSG00000035560	Wdr20rt	4921538B03Rik|4930427E19Rik|Wdr20|Wdr20b	WD repeat domain 20, retrogene	protein-coding	0.015000	0.517413	
mm_74408.1	chr8	3621203	3621403	-	1	NA	NA	NA	-7	NM_026156	67439	Mm.23739	NM_026156	ENSMUSG00000019470	Xab2	0610041O14Rik|AV025587	XPA binding protein 2	protein-coding	0.090000	0.601990	
mm_122528.1	chr14	47380315	47380515	-	1	NA	NA	NA	6555	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.005000	0.611940	
mm_112256.1	chr12	113838937	113839137	-	1	NA	NA	NA	295129	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.000000	0.467662	89(TATTTTAAAAGG,-,0.00)
mm_90036.1	chr10	115569948	115570148	+	1	NA	NA	NA	62	NM_029982	77798	Mm.446685	NM_029982	ENSMUSG00000092210	A930009A15Rik	-	RIKEN cDNA A930009A15 gene	protein-coding	0.030000	0.577114	
mm_170424.1	chr18	72506960	72507160	+	1	NA	NA	NA	-155991	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.050000	0.636816	
mm_101866.1	chr11	48891453	48891653	-	1	NA	NA	NA	10599	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.000000	0.462687	
mm_117755.1	chr13	95961482	95961682	-	1	NA	NA	NA	-69660	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.060000	0.487562	
mm_128108.1	chr15	28024365	28024565	-	1	NA	NA	NA	1383	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.145000	0.776119	
mm_62685.1	chr7	110018214	110018414	+	1	NA	NA	NA	-111	NM_181517	233726	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	0.110000	0.666667	
mm_99985.1	chr11	114702447	114702647	+	1	NA	NA	NA	-24865	NM_001034878	432611	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728	dynein, axonemal, intermediate chain 2	protein-coding	0.015000	0.542289	
mm_33350.1	chr4	129375237	129375437	+	1	NA	NA	NA	2691	NM_028603	73680	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	0.015000	0.467662	
mm_8346.1	chr1	150197101	150197301	-	1	NA	NA	NA	-32253	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.000000	0.522388	
mm_96331.1	chr11	65159871	65160071	+	1	NA	NA	NA	2990	NM_001099288	216831	Mm.134338	NM_175003	ENSMUSG00000033389	Arhgap44	6330543G20|AI840762|AU040829|AW493732|Rich2	Rho GTPase activating protein 44	protein-coding	0.010000	0.472637	
mm_169605.1	chr15	36760329	36760529	+	1	NA	NA	NA	30503	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.005000	0.467662	
mm_34200.1	chr4	140721081	140721281	+	1	NA	NA	NA	19708	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.055000	0.601990	
mm_47626.1	chr5	125283846	125284046	-	1	NA	NA	NA	57148	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.060000	0.636816	
mm_128526.1	chr15	54818886	54819086	-	1	NA	NA	NA	73058	NM_010930	18133	Mm.5167	NM_010930	ENSMUSG00000037362	Nov	C130088N23Rik|CCN3	nephroblastoma overexpressed gene	protein-coding	0.005000	0.333333	
mm_164035.1	chr14	79703644	79703844	+	1	NA	NA	NA	824	NR_045060	73989	Mm.107775	NR_045060		4930452G13Rik	-	RIKEN cDNA 4930452G13 gene	ncRNA	0.030000	0.562189	
mm_6487.1	chr1	74108277	74108477	-	1	NA	NA	NA	16070	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.010000	0.567164	
mm_62697.1	chr7	110122649	110122849	+	1	NA	NA	NA	690	NM_009516	22390	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.125000	0.711443	
mm_154574.1	chrX	7068114	7068314	+	1	NA	NA	NA	4	NM_001042542	11643	Mm.1498	NM_009651	ENSMUSG00000050089	Akap4	AKAP-4|AKAP82|Fsc1|PRKA4|mAKAP82|p82	A kinase (PRKA) anchor protein 4	protein-coding	0.005000	0.527363	
mm_169097.1	chr1	34113800	34114000	+	1	NA	NA	NA	-3459	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.045000	0.477612	
mm_1722.1	chr1	75361930	75362130	+	1	NA	NA	NA	1738	NM_010043	13346	Mm.6712	NM_010043	ENSMUSG00000026208	Des	-	desmin	protein-coding	0.010000	0.557214	
mm_45396.1	chr5	66151296	66151496	-	1	NA	NA	NA	-418	NM_178446	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.055000	0.676617	
mm_62771.1	chr7	112342301	112342501	+	1	NA	NA	NA	-25907	NM_027587	100504195	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	0.005000	0.348259	
mm_50024.1	chr6	41121229	41121429	+	1	NA	NA	NA	-85820	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.457711	
mm_14391.1	chr2	129800620	129800820	+	1	NA	NA	NA	203	NM_001038635	67333	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	0.125000	0.716418	
mm_91998.1	chr10	62190767	62190967	-	1	NA	NA	NA	3360	NR_106122	102465767		NR_106122	ENSMUSG00000099185	Mir7662	Gm27876|mmu-mir-7662	microRNA 7662	ncRNA	0.020000	0.497512	
mm_39479.1	chr5	20677584	20677784	+	1	NA	NA	NA	204440	NM_172992	68770	Mm.86410	NM_172992	ENSMUSG00000039987	Phtf2	1110054G21Rik|9530062N20Rik|AI447096|C77923	putative homeodomain transcription factor 2	protein-coding	0.005000	0.383085	
mm_62845.1	chr7	114291519	114291719	+	1	NA	NA	NA	-15503	NM_011965	26440	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.030000	0.532338	-38(CAACATAAAAGG,-,0.00),75(CTGTATAAATGC,-,0.00)
mm_130564.1	chr15	99370358	99370558	-	1	NA	NA	NA	24	NM_001310623	22379	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	0.135000	0.751244	
mm_78621.1	chr9	37613732	37613932	+	1	NA	NA	NA	-15	NM_011734	22619	Mm.196345	NM_011734	ENSMUSG00000001942	Siae	LSE|Ysg2	sialic acid acetylesterase	protein-coding	0.060000	0.616915	
mm_6813.1	chr1	84158168	84158368	-	1	NA	NA	NA	60693	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.288557	
mm_149589.1	chr19	16133034	16133234	+	1	NA	NA	NA	303	NM_008139	14682	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.185000	0.825871	
mm_75517.1	chr8	54724245	54724445	-	1	NA	NA	NA	23	NM_001172152	244484	Mm.95281	NM_028220	ENSMUSG00000039375	Wdr17	3010002I12Rik|B230207L18Rik	WD repeat domain 17	protein-coding	0.060000	0.666667	
mm_407.1	chr1	34197147	34197347	+	1	NA	NA	NA	36917	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.020000	0.487562	
mm_149283.1	chr19	10622262	10622462	+	1	NA	NA	NA	-11871	NM_027913	71768	Mm.169261	NM_027913	ENSMUSG00000043789	Vwce	1300015B04Rik	von Willebrand factor C and EGF domains	protein-coding	0.025000	0.487562	
mm_69913.1	chr7	141692598	141692798	-	1	NA	NA	NA	2358	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.025000	0.616915	
mm_162871.1	chr10	95408931	95409131	+	1	NA	NA	NA	6252	NM_001168657	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.010000	0.487562	
mm_134605.1	chr16	20701762	20701962	-	1	NA	NA	NA	6805	NM_133778	78408	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0.015000	0.616915	
mm_128845.1	chr15	71671331	71671531	-	1	NA	NA	NA	56407	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding	0.000000	0.407960	-3(TTCTATTAAGGC,-,0.00)
mm_85163.1	chr9	96364316	96364516	-	1	NA	NA	NA	-117	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.165000	0.810945	
mm_99486.1	chr11	102665481	102665681	+	1	NA	NA	NA	-4	NM_001127576	268491	Mm.447643	NM_001127576	ENSMUSG00000051455	Meioc	Gm1564|Gm663	meiosis specific with coiled-coil domain	protein-coding	0.140000	0.766169	
mm_81151.1	chr9	106892382	106892582	+	1	NA	NA	NA	-544	NM_029103	74840	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	0.075000	0.587065	-6(CCTCTTAAACGA,+,0.00)
mm_75864.1	chr8	70760750	70760950	-	1	NA	NA	NA	71	NM_183170	234384	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0.140000	0.756219	
mm_166347.1	chr5	119670617	119670817	+	1	NA	NA	NA	-145	NM_198052	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.070000	0.651741	
mm_59966.1	chr7	30428292	30428492	+	1	NA	NA	NA	5088	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.010000	0.482587	
mm_37336.1	chr4	119656672	119656872	-	1	NA	NA	NA	2173	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.030000	0.507463	75(CAGCATAAATGG,-,0.00)
mm_167404.1	chr8	104101506	104101706	+	1	NA	NA	NA	-19	NM_009868	12562	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.020000	0.611940	
mm_155275.1	chrX	61120203	61120403	+	1	NA	NA	NA	3925	NR_030706	331424	Mm.127263	NM_177916	ENSMUSG00000071753	C230004F18Rik	-	RIKEN cDNA C230004F18 gene	ncRNA	0.000000	0.417910	
mm_130605.1	chr15	99819836	99820036	-	1	NA	NA	NA	213	NM_023063	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.010000	0.492537	
mm_110587.1	chr12	56529360	56529560	-	1	NA	NA	NA	-40	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.040000	0.626866	
mm_93031.1	chr10	88146712	88146912	-	1	NA	NA	NA	129	NM_029249	75317	Mm.179378	NM_029249	ENSMUSG00000035365	Parpbp	4930547N16Rik|AI503644|PARI	PARP1 binding protein	protein-coding	0.090000	0.676617	
mm_44871.1	chr5	34513838	34514038	-	1	NA	NA	NA	41	NM_139064	231130	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0.090000	0.686567	
mm_115153.1	chr13	106260525	106260725	+	1	NA	NA	NA	676290	NM_029665	76582	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.010000	0.398010	
mm_118996.1	chr14	28509705	28509905	+	1	NA	NA	NA	-1600	NM_001256224	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.085000	0.572139	
mm_116999.1	chr13	56753734	56753934	-	1	NA	NA	NA	50166	NM_001164042	17129	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.050000	0.626866	
mm_113026.1	chr13	23260817	23261017	+	1	NA	NA	NA	11679	NM_001083311	100036518	Mm.455332	NM_001083311	ENSMUSG00000069280	Vmn1r223	Gm11330|OTTMUSG00000000541	vomeronasal 1 receptor 223	protein-coding	0.045000	0.522388	-33(GCCTATAAAAGC,-,0.00)
mm_2477.1	chr1	105845159	105845359	+	1	NA	NA	NA	64536	NM_009399	21934	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.005000	0.393035	
mm_23524.1	chr3	60617292	60617492	+	1	NA	NA	NA	116213	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.000000	0.388060	
mm_83624.1	chr9	48836130	48836330	-	1	NA	NA	NA	-285	NM_001033324	235320	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0.115000	0.676617	
mm_26064.1	chr3	135826336	135826536	+	1	NA	NA	NA	646	NM_001135150	67547	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.095000	0.736318	
mm_87120.1	chr10	33257003	33257203	+	1	NA	NA	NA	-746	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.000000	0.298507	
mm_30899.1	chr4	32335869	32336069	+	1	NA	NA	NA	-81466	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.020000	0.467662	
mm_19877.1	chr2	114049175	114049375	-	1	NA	NA	NA	3600	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.045000	0.517413	
mm_123762.1	chr14	70205949	70206149	-	1	NA	NA	NA	-27	NM_001271407	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.070000	0.651741	
mm_140083.1	chr17	75390862	75391062	+	1	NA	NA	NA	-44943	NM_001166493	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding	0.005000	0.328358	
mm_149295.1	chr19	10689136	10689336	+	1	NA	NA	NA	421	NM_181403	107305	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.050000	0.601990	
mm_165252.1	chr2	71873246	71873446	+	1	NA	NA	NA	122	NM_172665	228026	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.135000	0.771144	
mm_96551.1	chr11	68888454	68888654	+	1	NA	NA	NA	1	NM_177060	320040	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	0.025000	0.606965	
mm_81146.1	chr9	106880020	106880220	+	1	NA	NA	NA	6880	NM_175402	109095	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	0.010000	0.497512	
mm_60177.1	chr7	41633474	41633674	+	1	NA	NA	NA	43	NM_023363	67607	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	0.050000	0.522388	
mm_36707.1	chr4	97584491	97584691	-	1	NA	NA	NA	0	NR_015513	319865	Mm.373807	NM_177023		E130114P18Rik	-	RIKEN cDNA E130114P18 gene	ncRNA	0.025000	0.502488	
mm_48857.1	chr5	149636579	149636779	-	1	NA	NA	NA	-343	NM_001347534	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.070000	0.597015	
mm_3939.1	chr1	163779513	163779713	+	1	NA	NA	NA	30	NM_010629	16579	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	0.095000	0.681592	
mm_32674.1	chr4	115775428	115775628	+	1	NA	NA	NA	5506	NM_029196	75173	Mm.331798	NM_029196	ENSMUSG00000044556	Tex38	4930544O15Rik|Theg4	testis expressed 38	protein-coding	0.010000	0.323383	-23(ACCTTTAAAGAC,+,0.00)
mm_136144.1	chr16	87490461	87490661	-	1	NA	NA	NA	5308	NM_009840	12469	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	0.030000	0.437811	
mm_37953.1	chr4	133277598	133277798	-	1	NA	NA	NA	92	NM_025667	52174	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	0.150000	0.711443	
mm_153280.1	chr19	37207504	37207704	-	1	NA	NA	NA	59	NM_001164336	69104	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	0.145000	0.781095	
mm_9052.1	chr1	167285062	167285262	-	1	NA	NA	NA	-35	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.095000	0.711443	
mm_40227.1	chr5	37282815	37283015	+	1	NA	NA	NA	37151	NM_007765	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.010000	0.517413	
mm_90702.1	chr10	130360994	130361194	+	1	NA	NA	NA	33147	NM_001081448	625068	Mm.359168	NM_001081448	ENSMUSG00000070601	Vmn2r84	EG625068	vomeronasal 2, receptor 84	protein-coding	0.000000	0.358209	
mm_36329.1	chr4	70534778	70534978	-	1	NA	NA	NA	50	NM_172694	230316	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.110000	0.681592	
mm_10758.1	chr2	23259888	23260088	+	1	NA	NA	NA	52512	NM_027635	70981	Mm.314026	NM_027635	ENSMUSG00000026774	4931423N10Rik	-	RIKEN cDNA 4931423N10 gene	protein-coding	0.000000	0.303483	
mm_63571.1	chr7	128117357	128117557	+	1	NA	NA	NA	-12111	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.015000	0.477612	
mm_120075.1	chr14	57424003	57424203	+	1	NA	NA	NA	32	NM_009376	21821	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	0.120000	0.721393	
mm_143277.1	chr17	65674991	65675191	-	1	NA	NA	NA	-32887	NM_001146002	213272	Mm.255732	NM_153519	ENSMUSG00000050612	Txndc2	AU021712|Sptrx-1|Sptrx1|Trx4	thioredoxin domain containing 2 (spermatozoa)	protein-coding	0.005000	0.507463	
mm_15396.1	chr2	156721275	156721475	+	1	NA	NA	NA	96	NM_001042487	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.110000	0.696517	
mm_104634.1	chr11	97510933	97511133	-	1	NA	NA	NA	-10693	NM_001289118	100141474	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.010000	0.452736	
mm_110686.1	chr12	67222464	67222664	-	1	NA	NA	NA	-15	NM_207010	320772	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	0.100000	0.681592	
mm_95851.1	chr11	57807231	57807431	+	1	NA	NA	NA	5694	NM_001081168	50724	Mm.340083	NM_001081168	ENSMUSG00000020519	Sap30l	2310079P12Rik|AF006998|L55	SAP30-like	protein-coding	0.010000	0.383085	
mm_32093.1	chr4	98546543	98546743	+	1	NA	NA	NA	9	NM_001005787	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.020000	0.542289	
mm_17507.1	chr2	29054965	29055165	-	1	NA	NA	NA	1	NM_001166705	329375	Mm.425079	NM_001085514	ENSMUSG00000079502	Cfap77	1700101E01Rik|Gm823	cilia and flagella associated protein 77	protein-coding	0.090000	0.686567	
mm_169946.1	chr16	69893476	69893676	+	1	NA	NA	NA	-29832	NM_173069	224318	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0.075000	0.671642	
mm_74424.1	chr8	3665538	3665738	-	1	NA	NA	NA	-124	NM_026985	69189	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0.010000	0.502488	60(GTCTTTAAAGGG,+,0.00),60(GTCTTTAAAGGG,-,0.00),61(TCTTTAAAGGGA,+,0.00)
mm_65246.1	chr7	19831849	19832049	-	1	NA	NA	NA	-9194	NM_033601	12051	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.025000	0.552239	
mm_126666.1	chr15	84324375	84324575	+	1	NA	NA	NA	-245	NM_022321	64099	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0.010000	0.537313	
mm_96197.1	chr11	62005679	62005879	+	1	NA	NA	NA	49016	NM_001310526	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.005000	0.452736	
mm_95176.1	chr11	41498580	41498780	+	1	NA	NA	NA	502034	NM_177408	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding	0.040000	0.467662	
mm_173035.1	chrX	106545891	106546091	-	1	NA	NA	NA	-37195	NM_001033541	331493	Mm.249319	NM_001033541	ENSMUSG00000073010	Gm5127	B130007I08|EG331493	predicted gene 5127	protein-coding	0.040000	0.517413	
mm_162905.1	chr10	116896801	116897001	-	1	NA	NA	NA	-22	NM_001033333	237558	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	0.015000	0.398010	
mm_29344.1	chr3	108256905	108257105	-	1	NA	NA	NA	79	NM_011967	26442	Mm.208883	NM_011967	ENSMUSG00000068749	Psma5	ZETA	proteasome (prosome, macropain) subunit, alpha type 5	protein-coding	0.085000	0.582090	
mm_139717.1	chr17	57466216	57466416	+	1	NA	NA	NA	78998	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.005000	0.502488	
mm_84419.1	chr9	65579984	65580184	-	1	NA	NA	NA	3	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.110000	0.766169	
mm_123823.1	chr14	70618457	70618657	-	1	NA	NA	NA	12	NM_001252666	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.045000	0.626866	
mm_68520.1	chr7	111779961	111780161	-	1	NA	NA	NA	-84	NM_173739	233733	Mm.323322	NM_173739	ENSMUSG00000038296	Galnt18	2900011G21Rik|BC024988|Galntl4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18	protein-coding	0.115000	0.746269	
mm_138928.1	chr17	43801743	43801943	+	1	NA	NA	NA	-8	NM_207649	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.100000	0.726368	
mm_156292.1	chrX	136837408	136837608	+	1	NA	NA	NA	14762	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.368159	
mm_12595.1	chr2	74667170	74667370	+	1	NA	NA	NA	-1040	NM_008275	15433	Mm.57227	NM_008275	ENSMUSG00000001819	Hoxd13	Hox-4.8|spdh	homeobox D13	protein-coding	0.045000	0.572139	
mm_72661.1	chr8	84872009	84872209	+	1	NA	NA	NA	-2	NR_031759	71846	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	0.095000	0.676617	
mm_61802.1	chr7	84333216	84333416	+	1	NA	NA	NA	76722	NM_007488	11864	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding	0.005000	0.422886	20(GTGTTTAAAGGG,-,0.00)
mm_53514.1	chr6	136328422	136328622	+	1	NA	NA	NA	983	NM_001142734	668137	Mm.417085	NM_001142734	ENSMUSG00000094973	Gm8994	B020013A22Rik|EG668137	predicted gene 8994	protein-coding	0.055000	0.517413	
mm_163760.1	chr13	119791353	119791553	-	1	NA	NA	NA	-331	NM_001302550	72465	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0.085000	0.671642	
mm_131352.1	chr16	13702447	13702647	+	1	NA	NA	NA	-27289	NR_040574	76684	Mm.491043	NR_040574		Pla2g10os	1810007I06Rik	phospholipase A2, group X, opposite strand	ncRNA	0.000000	0.457711	
mm_136619.1	chr17	5492886	5493086	+	1	NA	NA	NA	386	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.110000	0.676617	
mm_78975.1	chr9	45370104	45370304	+	1	NA	NA	NA	19	NM_022004	59095	Mm.208287	NM_022004	ENSMUSG00000066705	Fxyd6	0610030I18Rik|Php	FXYD domain-containing ion transport regulator 6	protein-coding	0.070000	0.597015	
mm_144780.1	chr18	35830094	35830294	+	1	NA	NA	NA	376	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.155000	0.810945	
mm_169880.1	chr16	37883319	37883519	+	1	NA	NA	NA	15019	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.015000	0.487562	
mm_158003.1	chrX	95166285	95166485	-	1	NA	NA	NA	154	NM_001290385	236915	Mm.44841	NM_001033329	ENSMUSG00000025656	Arhgef9	9630036L12Rik	CDC42 guanine nucleotide exchange factor (GEF) 9	protein-coding	0.025000	0.552239	
mm_59542.1	chr7	27860458	27860658	+	1	NA	NA	NA	-27	NM_001024726	545938	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	0.030000	0.592040	-67(CCCCTTTAAAGT,-,0.00),-66(CCCTTTAAAGTC,+,0.00),-65(CCTTTAAAGTCG,+,0.00)
mm_106193.1	chr11	116827936	116828136	-	1	NA	NA	NA	10	NM_026280	67622	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0.155000	0.761194	
mm_56829.1	chr6	117174203	117174403	-	1	NA	NA	NA	5768	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.020000	0.547264	
mm_157781.1	chrX	73786989	73787189	-	1	NA	NA	NA	-54	NM_009279	20832	Mm.831	NM_009279	ENSMUSG00000002014	Ssr4	AW743063|C78062|Trap	signal sequence receptor, delta	protein-coding	0.105000	0.676617	
mm_69896.1	chr7	141637768	141637968	-	1	NA	NA	NA	17167	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.010000	0.507463	
mm_148249.1	chr18	80708089	80708289	-	1	NA	NA	NA	-16	NM_001164112	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.145000	0.766169	
mm_130555.1	chr15	99096761	99096961	-	1	NA	NA	NA	-2623	NM_176835	72778	Mm.30544	NM_176835	ENSMUSG00000038009	Dnajc22	2810451A06Rik|AI506245	DnaJ heat shock protein family (Hsp40) member C22	protein-coding	0.065000	0.636816	-52(TCTTTTAAATCC,+,0.00)
mm_91063.1	chr10	19001490	19001690	-	1	NA	NA	NA	10373	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.005000	0.477612	
mm_118030.1	chr13	101548050	101548250	-	1	NA	NA	NA	144480	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.015000	0.557214	
mm_62820.1	chr7	113369389	113369589	+	1	NA	NA	NA	-150	NM_133700	68815	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0.090000	0.636816	
mm_52420.1	chr6	113458701	113458901	+	1	NA	NA	NA	-94	NM_001034031	57890	Mm.131781	NM_145826	ENSMUSG00000043088	Il17re	AA589509|IL-17RE|Il25r	interleukin 17 receptor E	protein-coding	0.020000	0.597015	
mm_11662.1	chr2	35224432	35224632	+	1	NA	NA	NA	-23412	NM_026697	68365	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.050000	0.547264	
mm_59347.1	chr7	25627528	25627728	+	1	NA	NA	NA	4	NM_146184	232984	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	0.075000	0.746269	
mm_134908.1	chr16	30260219	30260419	-	1	NA	NA	NA	7213	NM_027904	71756	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.025000	0.572139	
mm_40767.1	chr5	67028710	67028910	+	1	NA	NA	NA	60394	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.025000	0.527363	
mm_115420.1	chr13	117211832	117212032	+	1	NA	NA	NA	-8641	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.010000	0.373134	
mm_145061.1	chr18	40512895	40513095	+	1	NA	NA	NA	254634	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.010000	0.452736	
mm_142790.1	chr17	50164217	50164417	-	1	NA	NA	NA	26180	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.025000	0.442786	
mm_163071.1	chr11	67254694	67254894	+	1	NA	NA	NA	16982	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.035000	0.572139	
mm_33034.1	chr4	122689335	122689535	+	1	NA	NA	NA	176	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	0.005000	0.462687	
mm_71201.1	chr8	40887758	40887958	+	1	NA	NA	NA	25491	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.015000	0.482587	
mm_18084.1	chr2	44926795	44926995	-	1	NA	NA	NA	-65273	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.115000	0.726368	
mm_5665.1	chr1	42694745	42694945	-	1	NA	NA	NA	-20	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.085000	0.626866	
mm_133114.1	chr16	65533907	65534107	+	1	NA	NA	NA	13378	NM_008849	18736	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.010000	0.393035	
mm_28306.1	chr3	89237741	89237941	-	1	NA	NA	NA	7172	NR_121683	360213	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.060000	0.631841	
mm_67855.1	chr7	98702817	98703017	-	1	NA	NA	NA	11	NR_144495	100040769	Mm.126401	NR_144495		Gm15506	OTTMUSG00000023003	predicted gene 15506	ncRNA	0.090000	0.611940	
mm_147612.1	chr18	56981101	56981301	-	1	NA	NA	NA	-5822	NM_029909	77422	Mm.256874	NM_029909	ENSMUSG00000024592	C330018D20Rik	AU018666	RIKEN cDNA C330018D20 gene	protein-coding	0.010000	0.527363	
mm_149462.1	chr19	11528498	11528698	+	1	NA	NA	NA	-8251	NM_025658	66607	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	0.005000	0.517413	
mm_12320.1	chr2	69381932	69382132	+	1	NA	NA	NA	1570	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.025000	0.517413	
mm_71957.1	chr8	70513976	70514176	+	1	NA	NA	NA	-3709	NM_019883	22186	Mm.297372	NM_019883	ENSMUSG00000090137	Uba52	D8Ertd21e|Gm1863|Rps27a|Ubb|Ubc	ubiquitin A-52 residue ribosomal protein fusion product 1	protein-coding	0.030000	0.567164	
mm_64267.1	chr7	141751361	141751561	+	1	NA	NA	NA	-37550	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.015000	0.532338	
mm_27261.1	chr3	37707314	37707514	-	1	NA	NA	NA	16946	NM_198657	381438	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.035000	0.492537	-32(GCTTAAATACCC,+,0.00)
mm_19731.1	chr2	104494332	104494532	-	1	NA	NA	NA	57	NM_010434	15259	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.180000	0.810945	
mm_112876.1	chr13	20853833	20854033	+	1	NA	NA	NA	59820	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.358209	
mm_90877.1	chr10	9675103	9675303	-	1	NA	NA	NA	5	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0.140000	0.751244	
mm_31435.1	chr4	48539977	48540177	+	1	NA	NA	NA	-4	NM_001145924	66665	Mm.140749	NM_028137	ENSMUSG00000039693	Msantd3	2410046L14Rik|2810429P03Rik|5730528L13Rik|Mysantd3	Myb/SANT-like DNA-binding domain containing 3	protein-coding	0.070000	0.631841	
mm_81445.1	chr9	109812159	109812359	+	1	NA	NA	NA	-4368	NM_183136	78709	Mm.99613	NM_183136	ENSMUSG00000050074	Spink8	C630041L24Rik	serine peptidase inhibitor, Kazal type 8	protein-coding	0.005000	0.467662	
mm_18066.1	chr2	42165189	42165389	-	1	NA	NA	NA	282279	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.005000	0.263682	
mm_133548.1	chr16	91269772	91269972	+	1	NA	NA	NA	103	NM_016968	50914	Mm.39300	NM_016968	ENSMUSG00000046160	Olig1	AI836478|AW494459|Bhlhb6|Olg-1|Oligo1|bHLHe21	oligodendrocyte transcription factor 1	protein-coding	0.125000	0.726368	
mm_49626.1	chr6	30804097	30804297	+	1	NA	NA	NA	62898	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.005000	0.452736	
mm_67976.1	chr7	100656829	100657029	-	1	NA	NA	NA	36	NM_001163187	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.015000	0.592040	
mm_115545.1	chr13	8851917	8852117	-	1	NA	NA	NA	19027	NM_001039389	207615	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.000000	0.313433	-77(GGACTTTAAAGC,-,0.00),16(GTTTTTAAAGTG,+,0.00)
mm_144521.1	chr18	24941362	24941562	+	1	NA	NA	NA	224503	NM_001142697	66648	Mm.263189	NM_001004361	ENSMUSG00000024269	Tpgs2	5730437P09Rik|5730494M16Rik|AI666318|Pgs2	tubulin polyglutamylase complex subunit 2	protein-coding	0.030000	0.601990	
mm_108096.1	chr12	74803770	74803970	+	1	NA	NA	NA	373462	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0.015000	0.323383	
mm_47343.1	chr5	122502637	122502837	-	1	NA	NA	NA	-512	NR_027838	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.075000	0.666667	
mm_26394.1	chr3	142587529	142587729	+	1	NA	NA	NA	-7218	NM_010259	14468	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.000000	0.412935	
mm_12868.1	chr2	83812691	83812891	+	1	NA	NA	NA	63	NM_175514	241520	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	0.110000	0.726368	
mm_114071.1	chr13	54382548	54382748	+	1	NA	NA	NA	11299	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.005000	0.492537	
mm_169773.1	chr1	60704069	60704269	+	1	NA	NA	NA	-42219	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.010000	0.462687	
mm_163846.1	chr14	19418024	19418224	-	1	NA	NA	NA	184463	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.010000	0.338308	
mm_117234.1	chr13	64274883	64275083	-	1	NA	NA	NA	5	NM_172587	218294	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	0.090000	0.676617	
mm_81878.1	chr9	119323046	119323246	+	1	NA	NA	NA	-719	NM_133985	108737	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	0.055000	0.587065	
mm_67956.1	chr7	100511691	100511891	-	1	NA	NA	NA	3024	NM_153527	69387	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	0.030000	0.527363	
mm_162090.1	chrX	37469864	37470064	+	1	NA	NA	NA	96	NM_001102457	100135654	Mm.359489	NM_001102457	ENSMUSG00000079636	Rhox3c	EG665203|Rhox3.3|Rhox3b	reproductive homeobox 3C	protein-coding	0.030000	0.472637	
mm_76366.1	chr8	84774032	84774232	-	1	NA	NA	NA	237	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.040000	0.636816	
mm_158720.1	chrX	162888288	162888488	-	1	NA	NA	NA	74	NM_025932	67043	Mm.44207	NM_025932	ENSMUSG00000031357	Syap1	2010110O17Rik|AW011796	synapse associated protein 1	protein-coding	0.105000	0.706468	
mm_88334.1	chr10	75573397	75573597	+	1	NA	NA	NA	2	NM_008116	14598	Mm.4559	NM_008116	ENSMUSG00000006345	Ggt1	CD224|GGT|GGT 1|GGT-1|Ggtp|dwg	gamma-glutamyltransferase 1	protein-coding	0.030000	0.562189	
mm_27083.1	chr3	30013066	30013266	-	1	NA	NA	NA	38	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.060000	0.611940	-12(CCCCTTTAAAGA,-,0.00),-11(CCCTTTAAAGAG,+,0.00),-11(CCCTTTAAAGAG,-,0.00),-9(CTTTAAAGAGAC,+,0.00)
mm_96252.1	chr11	62575929	62576129	+	1	NA	NA	NA	1543	NM_011706	22368	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0.065000	0.597015	
mm_102310.1	chr11	55608525	55608725	-	1	NA	NA	NA	-427	NM_020492	14654	Mm.89320	NM_020492	ENSMUSG00000000263	Glra1	nmf11|oscillator|ot|spasmodic|spd	glycine receptor, alpha 1 subunit	protein-coding	0.040000	0.532338	
mm_11302.1	chr2	30184728	30184928	+	1	NA	NA	NA	-6369	NM_172660	227695	Mm.4449	NM_172660	ENSMUSG00000039660	Spout1	9930028P05|AL033358|D2Wsu81e	SPOUT domain containing methyltransferase 1	protein-coding	0.035000	0.487562	-32(TTCTATAAAAAC,-,0.00)
mm_74371.1	chr8	128493798	128493998	+	1	NA	NA	NA	134657	NR_035436	100316680		NR_035436	ENSMUSG00000084523	Mir1903	Mirn1903|mmu-mir-1903	microRNA 1903	ncRNA	0.010000	0.452736	
mm_33576.1	chr4	132311418	132311618	+	1	NA	NA	NA	815	NR_028537	100217437		NR_028537		Snord99	MBII-420	small nucleolar RNA, C/D box 99	snoRNA	0.000000	0.398010	
mm_111485.1	chr12	98822137	98822337	-	1	NA	NA	NA	51215	NM_001160108	75553	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.000000	0.363184	
mm_27893.1	chr3	79287182	79287382	-	1	NA	NA	NA	-58094	NM_001142953	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.110000	0.711443	
mm_120400.1	chr14	64949947	64950147	+	1	NA	NA	NA	2	NM_001253731	210925	Mm.71332	NM_153414	ENSMUSG00000021975	Ints9	BC028953|D14Ertd231e	integrator complex subunit 9	protein-coding	0.045000	0.562189	
mm_8977.1	chr1	165601859	165602059	-	1	NA	NA	NA	32582	NM_001001880	68481	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.015000	0.333333	
mm_155543.1	chrX	74308997	74309197	+	1	NA	NA	NA	-3936	NM_138607	108160	Mm.4370	NM_138607	ENSMUSG00000001962	Fam50a	D0HXS9928E|XAP-5	family with sequence similarity 50, member A	protein-coding	0.005000	0.472637	
mm_143674.1	chr17	79981532	79981732	-	1	NA	NA	NA	80636	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.010000	0.472637	-79(CCTTCTTAAAGG,-,0.00),-78(CTTCTTAAAGGG,+,0.00)
mm_12824.1	chr2	80317920	80318120	+	1	NA	NA	NA	2554	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.015000	0.477612	
mm_71742.1	chr8	64543752	64543952	+	1	NA	NA	NA	-29411	NR_030491	735270		NR_030491	ENSMUSG00000076042	Mir710	Mirn710|mmu-mir-710	microRNA 710	ncRNA	0.010000	0.393035	
mm_163204.1	chr11	97728284	97728484	-	1	NA	NA	NA	16320	NM_054051	108083	Mm.39700	NM_054051	ENSMUSG00000018547	Pip4k2b	AI848124|PI5P4Kbeta|Pip5k2b|c11	phosphatidylinositol-5-phosphate 4-kinase, type II, beta	protein-coding	0.020000	0.562189	
mm_50426.1	chr6	48841539	48841739	+	1	NA	NA	NA	-17	NM_001098271	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.020000	0.577114	
mm_33963.1	chr4	137560609	137560809	+	1	NA	NA	NA	14471	NM_001033979	435811	Mm.359646	NM_001033979	ENSMUSG00000094035	Ldlrad2	-	low density lipoprotein receptor A domain containing 2	protein-coding	0.015000	0.422886	
mm_15235.1	chr2	154613248	154613448	+	1	NA	NA	NA	-20	NM_199304	228807	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	0.135000	0.761194	
mm_30524.1	chr4	3089441	3089641	+	1	NA	NA	NA	-82542	NM_001167534	100312470	Mm.480297	NM_001167534	ENSMUSG00000094798	Vmn1r2	Gm11776|OTTMUSG00000004179	vomeronasal 1 receptor 2	protein-coding	0.005000	0.422886	
mm_159932.1	chr6	71373120	71373320	+	1	NA	NA	NA	-207	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.000000	0.407960	
mm_142018.1	chr17	35200829	35201029	-	1	NA	NA	NA	1078	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.015000	0.482587	-19(AAGCCTAAAAGG,-,0.00)
mm_69918.1	chr7	141704489	141704689	-	1	NA	NA	NA	14249	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.008197	0.439024	
mm_80786.1	chr9	95954664	95954864	+	1	NA	NA	NA	4	NM_001311130	24127	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	0.105000	0.651741	
mm_60829.1	chr7	45707817	45708017	+	1	NA	NA	NA	2670	NM_016974	13170	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.025000	0.507463	
mm_171906.1	chr5	47287199	47287399	-	1	NA	NA	NA	-695856	NR_111900	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding	0.055000	0.631841	
mm_94967.1	chr11	30863569	30863769	+	1	NA	NA	NA	-21689	NM_175490	237716	Mm.338361	NM_175490	ENSMUSG00000043999	Gpr75	-	G protein-coupled receptor 75	protein-coding	0.005000	0.348259	-31(CCTTTTAAATTT,+,0.00)
mm_3536.1	chr1	150393159	150393359	+	1	NA	NA	NA	-204	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.085000	0.626866	
mm_93293.1	chr10	96374119	96374319	-	1	NA	NA	NA	148012	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.015000	0.447761	
mm_122595.1	chr14	50930220	50930420	-	1	NA	NA	NA	529	NM_001310506	219024	Mm.239117	NM_001033271	ENSMUSG00000035953	Tmem55b	BC039161	transmembrane protein 55b	protein-coding	0.050000	0.567164	
mm_153473.1	chr19	41273556	41273756	-	1	NA	NA	NA	-9652	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.010000	0.477612	
mm_14270.1	chr2	128708625	128708825	+	1	NA	NA	NA	9728	NM_008587	17289	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.000000	0.417910	
mm_35504.1	chr4	41093262	41093462	-	1	NA	NA	NA	4821	NM_016689	11828	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	0.010000	0.507463	
mm_170967.1	chr2	60021163	60021363	-	1	NA	NA	NA	104477	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.025000	0.482587	
mm_45935.1	chr5	89883262	89883462	-	1	NA	NA	NA	-28	NM_001081401	330119	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	0.125000	0.766169	
mm_149761.1	chr19	22851902	22852102	+	1	NA	NA	NA	101397	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.025000	0.437811	
mm_65749.1	chr7	28547015	28547215	-	1	NA	NA	NA	139	NM_001081115	233038	Mm.224815	NM_001081115	ENSMUSG00000047586	Nccrp1	1190020J12Rik|Gm163|NCCRP-1	non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)	protein-coding	0.035000	0.611940	-36(CTCTCTTAAAAG,-,0.00),-34(CTCTTAAAAGCC,+,0.00)
mm_155895.1	chrX	101652526	101652726	+	1	NA	NA	NA	12408	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.010000	0.417910	
mm_83539.1	chr9	46234362	46234562	-	1	NA	NA	NA	837	NM_001289833	11814	Mm.390161	NM_023114	ENSMUSG00000032081	Apoc3	apo-CIII|apoC-III	apolipoprotein C-III	protein-coding	0.025000	0.582090	
mm_91002.1	chr10	14545230	14545430	-	1	NA	NA	NA	-294	NM_001002268	215798	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.110000	0.741294	
mm_138919.1	chr17	43611188	43611388	+	1	NA	NA	NA	19011	NM_001161366	210510	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	0.020000	0.398010	
mm_136013.1	chr16	75909187	75909387	-	1	NA	NA	NA	-21	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.010000	0.452736	
mm_71265.1	chr8	40918669	40918869	+	1	NA	NA	NA	-7464	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.000000	0.358209	
mm_132893.1	chr16	48842791	48842991	+	1	NA	NA	NA	339	NM_020509	57262	Mm.441868	NM_020509	ENSMUSG00000061100	Retnla	1810019L16Rik|Fizz-1|Fizz1|HIMF|RELM-alpha|RELMa|RELMalpha|Xcp2	resistin like alpha	protein-coding	0.005000	0.447761	
mm_143039.1	chr17	56717936	56718136	-	1	NA	NA	NA	274	NM_027244	69875	Mm.279823	NM_027244	ENSMUSG00000002379	Ndufa11	2010012C24Rik|AV006275|B14.7	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 11	protein-coding	0.085000	0.641791	
mm_47536.1	chr5	124248286	124248486	-	1	NA	NA	NA	1374	NM_011256	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.020000	0.532338	
mm_162689.1	chr10	18953279	18953479	+	1	NA	NA	NA	58584	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.000000	0.477612	17(CTCTCTATATGC,-,0.00)
mm_94023.1	chr10	127667497	127667697	-	1	NA	NA	NA	474	NR_045171	72243	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0.025000	0.522388	
mm_68284.1	chr7	105610823	105611023	-	1	NA	NA	NA	-10807	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.020000	0.587065	
mm_15629.1	chr2	162987346	162987546	+	1	NA	NA	NA	-35	NM_001291154	27219	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	0.020000	0.572139	
mm_43161.1	chr5	127027294	127027494	+	1	NA	NA	NA	-3395	NR_040685	71247	Mm.399586	NR_040685	ENSMUSG00000105490	4933438B17Rik	-	RIKEN cDNA 4933438B17 gene	ncRNA	0.020000	0.517413	
mm_87375.1	chr10	44358295	44358495	+	1	NA	NA	NA	-1281	NR_035450	100316688		NR_035450	ENSMUSG00000089260	Mir1929	mir-1929|mmu-mir-1929	microRNA 1929	ncRNA	0.000000	0.407960	65(GGGTTTAAAGGG,-,0.00)
mm_26601.1	chr3	152122878	152123078	+	1	NA	NA	NA	42922	NM_016867	54120	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.005000	0.532338	
mm_84897.1	chr9	79811055	79811255	-	1	NA	NA	NA	17514	NR_040734	74633	Mm.262175	NR_040734	ENSMUSG00000086918	4930429F24Rik	-	RIKEN cDNA 4930429F24 gene	ncRNA	0.010000	0.383085	
mm_47393.1	chr5	123017466	123017666	-	1	NA	NA	NA	2492	NM_175423	109305	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.010000	0.547264	
mm_15409.1	chr2	156775297	156775497	+	1	NA	NA	NA	-67	NM_172118	98932	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0.085000	0.686567	
mm_65286.1	chr7	24435423	24435623	-	1	NA	NA	NA	10159	NM_199013	210145	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.020000	0.601990	
mm_89686.1	chr10	97565391	97565591	+	1	NA	NA	NA	-10	NM_008524	17022	Mm.18888	NM_008524	ENSMUSG00000036446	Lum	Ldc|SLRR2D	lumican	protein-coding	0.015000	0.452736	
mm_148113.1	chr18	74347516	74347716	-	1	NA	NA	NA	64516	NM_028948	74453	Mm.182293	NM_028948	ENSMUSG00000035394	Cfap53	4933415I03Rik|Ccdc11	cilia and flagella associated protein 53	protein-coding	0.005000	0.467662	
mm_86341.1	chr9	123260690	123260890	-	1	NA	NA	NA	-1	NM_001002267	72309	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	0.105000	0.716418	
mm_43701.1	chr5	139252299	139252499	+	1	NA	NA	NA	75	NM_026269	67604	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.180000	0.786070	
mm_25620.1	chr3	118562051	118562251	+	1	NA	NA	NA	-27	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.050000	0.661692	
mm_80656.1	chr9	90054393	90054593	+	1	NA	NA	NA	226	NM_001312649	13036	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.045000	0.661692	
mm_46035.1	chr5	91961510	91961710	-	1	NA	NA	NA	946	NR_073442	68098	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0.000000	0.437811	-36(GGGTATATATAG,-,0.00),47(TCTTTTATAAAC,+,0.00)
mm_121244.1	chr14	103057109	103057309	+	1	NA	NA	NA	10197	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.025000	0.527363	
mm_98399.1	chr11	94327972	94328172	+	1	NA	NA	NA	71	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.125000	0.756219	
mm_89323.1	chr10	87931248	87931448	+	1	NA	NA	NA	-35323	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.318408	-72(CTCCTTAAGAGC,-,0.00)
mm_52302.1	chr6	108821491	108821691	+	1	NA	NA	NA	-7050	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.015000	0.457711	
mm_106729.1	chr12	3885911	3886111	+	1	NA	NA	NA	-5733	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.010000	0.517413	
mm_129440.1	chr15	78529493	78529693	-	1	NA	NA	NA	58	NM_001204153	72709	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	0.035000	0.636816	
mm_124991.1	chr15	22018844	22019044	+	1	NA	NA	NA	696040	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding	0.010000	0.452736	
mm_16887.1	chr2	13011544	13011744	-	1	NA	NA	NA	-780	NM_153155	227580	Mm.229322	NM_153155	ENSMUSG00000049630	C1ql3	1110065A22Rik|AI661623|C1ql|C1qtnf13|CTRP13|K100	C1q-like 3	protein-coding	0.065000	0.587065	
mm_136843.1	chr17	12760081	12760281	+	1	NA	NA	NA	9525	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.000000	0.437811	
mm_47523.1	chr5	124112133	124112333	-	1	NA	NA	NA	-67	NM_001347478	66627	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	0.110000	0.656716	
mm_140747.1	chr17	15831084	15831284	-	1	NA	NA	NA	-4598	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.120000	0.681592	-94(AGCTATAAAAAG,-,0.00)
mm_48335.1	chr5	139129777	139129977	-	1	NA	NA	NA	-125	NM_008923	19085	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	0.095000	0.716418	
mm_154530.1	chrM	13597	13797	-	1	NA	NA	NA	NA	NA									0.005000	0.373134	
mm_5826.1	chr1	52799426	52799626	-	1	NA	NA	NA	18162	NM_008384	16329	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	0.020000	0.527363	
mm_64491.1	chr7	143107207	143107407	+	1	NA	NA	NA	53	NM_008434	16535	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0.095000	0.741294	
mm_6037.1	chr1	59668875	59669075	-	1	NA	NA	NA	1859	NM_009460	22218	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0.010000	0.373134	
mm_6735.1	chr1	82832493	82832693	-	1	NA	NA	NA	-6867	NM_001310713	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.010000	0.517413	
mm_2071.1	chr1	87635870	87636070	+	1	NA	NA	NA	15658	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.000000	0.427861	45(GGATTTTAAAAG,-,0.00),46(GATTTTAAAAGG,-,0.00)
mm_22589.1	chr3	13473112	13473312	+	1	NA	NA	NA	1557	NM_001163328	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.100000	0.716418	
mm_148666.1	chr19	5609987	5610187	+	1	NA	NA	NA	7	NM_001199249	81601	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	0.060000	0.621891	
mm_42480.1	chr5	115470687	115470887	+	1	NA	NA	NA	4521	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.040000	0.532338	
mm_73660.1	chr8	111033811	111034011	+	1	NA	NA	NA	69	NM_146217	234734	Mm.24174	NM_146217	ENSMUSG00000031960	Aars	AI316495|C76919|sti	alanyl-tRNA synthetase	protein-coding	0.065000	0.597015	
mm_134011.1	chr16	4878212	4878412	-	1	NA	NA	NA	1539	NM_145359	207740	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.000000	0.572139	
mm_90282.1	chr10	122941877	122942077	+	1	NA	NA	NA	43747	NR_029527	387251		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.005000	0.477612	
mm_107256.1	chr12	28675130	28675330	+	1	NA	NA	NA	23	NM_134052	104923	Mm.291504	NM_134052	ENSMUSG00000020629	Adi1	AL024210|Fe-ARD|MTCBP-1|Ni-ARD	acireductone dioxygenase 1	protein-coding	0.100000	0.686567	
mm_100617.1	chr11	121556121	121556321	+	1	NA	NA	NA	-36879	NM_178763	319530	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.030000	0.557214	
mm_31862.1	chr4	80002562	80002762	+	1	NA	NA	NA	-831551	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.015000	0.417910	-64(CTCTTTATATGC,-,0.00),-62(CTTTATATGCTC,+,0.00)
mm_39183.1	chr4	155784967	155785167	-	1	NA	NA	NA	807	NM_001033394	320587	Mm.384382	NM_001033394	ENSMUSG00000073680	Tmem88b	A230069A22Rik	transmembrane protein 88B	protein-coding	0.015000	0.577114	
mm_104967.1	chr11	100193155	100193355	-	1	NA	NA	NA	-9	NM_201255	107656	Mm.445335	NM_201255	ENSMUSG00000051617	Krt9	EPPK|K9|Krt1-9	keratin 9	protein-coding	0.010000	0.597015	
mm_94338.1	chr11	4704572	4704772	+	1	NA	NA	NA	-6	NM_026015	67178	Mm.271056	NM_026015	ENSMUSG00000009076	Zmat5	2610510L01Rik|D11Bwg0572e|D11Bwg1548e	zinc finger, matrin type 5	protein-coding	0.060000	0.542289	
mm_23692.1	chr3	68691851	68692051	+	1	NA	NA	NA	527	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.005000	0.507463	
mm_73666.1	chr8	111056252	111056452	+	1	NA	NA	NA	13	NM_028274	72544	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	0.150000	0.706468	
mm_39281.1	chr5	3927968	3928168	+	1	NA	NA	NA	-118	NM_194462	100986	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	0.080000	0.661692	
mm_65919.1	chr7	30216830	30217030	-	1	NA	NA	NA	15099	NM_025548	66411	Mm.27947	NM_025548	ENSMUSG00000006095	Tbcb	2410007D12Rik|AU041393|CG22|CKAPI|Ckap1	tubulin folding cofactor B	protein-coding	0.055000	0.592040	
mm_9144.1	chr1	170885317	170885517	-	1	NA	NA	NA	123	NM_023173	80915	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ENSMUSG00000045460|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	0.075000	0.671642	
mm_29430.1	chr3	109027523	109027723	-	1	NA	NA	NA	-16	NM_001163567	329739	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.165000	0.786070	
mm_156639.1	chrX	157598104	157598304	+	1	NA	NA	NA	511	NM_172307	270669	Mm.37577	NM_172307	ENSMUSG00000046873	Mbtps2	9630032G22Rik|AI662535	membrane-bound transcription factor peptidase, site 2	protein-coding	0.080000	0.621891	
mm_42694.1	chr5	119836698	119836898	+	1	NA	NA	NA	2135	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.050000	0.547264	
mm_42091.1	chr5	110286259	110286459	+	1	NA	NA	NA	40	NM_011132	18973	Mm.35061	NM_011132	ENSMUSG00000007080	Pole	-	polymerase (DNA directed), epsilon	protein-coding	0.110000	0.691542	
mm_161621.1	chr16	58729056	58729256	+	1	NA	NA	NA	1246	NM_001252451	224250	Mm.29482	NM_171826	ENSMUSG00000022744	Cldnd1	1110019C08Rik|AA407103|AI849195|AW489850|Cldn25	claudin domain containing 1	protein-coding	0.010000	0.417910	-79(CTGCATTTAAGG,-,0.00),-77(GCATTTAAGGTG,+,0.00)
mm_132103.1	chr16	31428660	31428860	+	1	NA	NA	NA	7	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.085000	0.661692	
mm_63522.1	chr7	127904002	127904202	+	1	NA	NA	NA	29	NM_009739	12041	Mm.425495	NM_009739	ENSMUSG00000030802	Bckdk	AI327402	branched chain ketoacid dehydrogenase kinase	protein-coding	0.090000	0.621891	
mm_27774.1	chr3	72967867	72968067	-	1	NA	NA	NA	-1101	NM_001081137	69983	Mm.261054	NM_001081137	ENSMUSG00000027790	Sis	2010204N08Rik|SI|Si-s	sucrase isomaltase (alpha-glucosidase)	protein-coding	0.000000	0.308458	
mm_11020.1	chr2	26609707	26609907	+	1	NA	NA	NA	-5390	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.000000	0.522388	
mm_165611.1	chr3	53614661	53614861	+	1	NA	NA	NA	42594	NM_172862	242022	Mm.38378	NM_172862	ENSMUSG00000037016	Frem2	6030440P17Rik|8430406N05Rik|Gm409|b2b1562Clo|my|ne|nv1	Fras1 related extracellular matrix protein 2	protein-coding	0.005000	0.462687	-89(GCTTTTAAACTG,+,0.00)
mm_46064.1	chr5	92278063	92278263	-	1	NA	NA	NA	18	NM_001163687	67111	Mm.28890	NM_025972	ENSMUSG00000029413	Naaa	2210023K21Rik|3830414F09Rik|Asahl	N-acylethanolamine acid amidase	protein-coding	0.045000	0.671642	
mm_68523.1	chr7	112024033	112024233	-	1	NA	NA	NA	627	NM_177249	74996	Mm.16974	NM_133758	ENSMUSG00000059263	Usp47	4930502N04Rik|A630020C16Rik	ubiquitin specific peptidase 47	protein-coding	0.055000	0.527363	
mm_169948.1	chr16	73554032	73554232	-	1	NA	NA	NA	787935	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.025000	0.492537	
mm_6058.1	chr1	60489727	60489927	-	1	NA	NA	NA	76938	NM_001045513	77300	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0.000000	0.601990	
mm_107092.1	chr12	17544823	17545023	+	1	NA	NA	NA	50	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.155000	0.746269	
mm_8661.1	chr1	156654155	156654355	-	1	NA	NA	NA	20084	NM_023141	30935	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.025000	0.477612	
mm_77380.1	chr8	119840469	119840669	-	1	NA	NA	NA	10	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.110000	0.696517	
mm_64488.1	chr7	143069349	143069549	+	1	NA	NA	NA	81	NM_001115085	56844	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.100000	0.636816	
mm_32102.1	chr4	98726655	98726855	+	1	NA	NA	NA	1	NM_001081202	381591	Mm.34340	NM_001081202	ENSMUSG00000087166	L1td1	AA546746|AB211064|D76865|ECAT11	LINE-1 type transposase domain containing 1	protein-coding	0.040000	0.621891	
mm_52084.1	chr6	97829210	97829410	+	1	NA	NA	NA	22252	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.383085	
mm_13839.1	chr2	119356223	119356423	+	1	NA	NA	NA	5081	NM_026929	69065	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	0.000000	0.442786	
mm_18925.1	chr2	76745026	76745226	-	1	NA	NA	NA	69811	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.010000	0.447761	-15(CCTTATATACAG,+,0.00)
mm_97025.1	chr11	72042400	72042600	+	1	NA	NA	NA	-2	NM_144526	109212	Mm.33118	NM_144526	ENSMUSG00000020808	Fam64a	2610008F03Rik|6720460F02Rik|AI115087|CATS	family with sequence similarity 64, member A	protein-coding	0.090000	0.686567	
mm_57753.1	chr6	129216254	129216454	-	1	NA	NA	NA	21691	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.000000	0.422886	
mm_16117.1	chr2	169914994	169915194	+	1	NA	NA	NA	48093	NR_131974	446211	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0.035000	0.567164	
mm_42757.1	chr5	120854211	120854411	+	1	NA	NA	NA	6944	NM_145153	243262	Mm.105369	NM_145153	ENSMUSG00000053765	Oas1f	-	2'-5' oligoadenylate synthetase 1F	protein-coding	0.000000	0.432836	-70(GACTCTTAATGC,-,0.00)
mm_89009.1	chr10	81628611	81628811	+	1	NA	NA	NA	171	NM_027480	70615	Mm.304382	NM_027480	ENSMUSG00000054708	Ankrd24	4631433D01Rik|5730519E19Rik|D10Bur2e	ankyrin repeat domain 24	protein-coding	0.040000	0.626866	
mm_20086.1	chr2	120731419	120731619	-	1	NA	NA	NA	-2	NM_026891	68968	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	0.145000	0.731343	
mm_104322.1	chr11	93955839	93956039	-	1	NA	NA	NA	-156	NM_001077529	18103	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	0.105000	0.686567	
mm_70807.1	chr8	23021871	23022071	+	1	NA	NA	NA	-13128	NM_001277281	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.015000	0.373134	
mm_162089.1	chrX	37453559	37453759	+	1	NA	NA	NA	0	NM_001099318	100039948	Mm.477362	NM_001099318	ENSMUSG00000079637	Rhox2c	OTTMUSG00000017149|Rhox2.3|Rhox2b	reproductive homeobox 2C	protein-coding	0.040000	0.492537	
mm_108656.1	chr12	86361394	86361594	+	1	NA	NA	NA	377	NM_001159500	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.025000	0.572139	
mm_80040.1	chr9	68970293	68970493	+	1	NA	NA	NA	205047	NR_033299	320440	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.005000	0.467662	
mm_121180.1	chr14	103049159	103049359	+	1	NA	NA	NA	2247	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.452736	
mm_50406.1	chr6	48728088	48728288	+	1	NA	NA	NA	9567	NM_146167	231932	Mm.30479	NM_146167	ENSMUSG00000043931	Gimap7	IAN7|Ian3	GTPase, IMAP family member 7	protein-coding	0.015000	0.487562	
mm_172780.1	chr8	97592764	97592964	+	1	NA	NA	NA	-1046891	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.015000	0.492537	
mm_163282.1	chr11	116615808	116616008	-	1	NA	NA	NA	8344	NM_001167680	217344	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.015000	0.567164	
mm_101066.1	chr11	11404828	11405028	-	1	NA	NA	NA	57491	NM_015785	53604	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	0.000000	0.189055	
mm_138601.1	chr17	35555951	35556151	+	1	NA	NA	NA	3923	NM_001008424	386463	Mm.426664	NM_001008424	ENSMUSG00000039518	Cdsn	AI747712	corneodesmosin	protein-coding	0.030000	0.597015	
mm_60827.1	chr7	45707035	45707235	+	1	NA	NA	NA	1888	NM_016974	13170	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.030000	0.487562	
mm_162244.1	chrX	157818105	157818305	+	1	NA	NA	NA	-230	NM_001081667	245683	Mm.295846	NM_001081667	ENSMUSG00000047485	Klhl34	Gm388	kelch-like 34	protein-coding	0.030000	0.492537	
mm_36551.1	chr4	86691372	86691572	-	1	NA	NA	NA	-21413	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.015000	0.497512	
mm_91602.1	chr10	41221226	41221426	-	1	NA	NA	NA	81915	NM_133999	103199	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0.015000	0.527363	
mm_127197.1	chr15	99074914	99075114	+	1	NA	NA	NA	41	NM_030159	78733	Mm.124905	NM_030159	ENSMUSG00000032783	Troap	AW476063|E130301L11Rik|tastin	trophinin associated protein	protein-coding	0.070000	0.587065	
mm_37569.1	chr4	126241989	126242189	-	1	NA	NA	NA	14230	NM_144941	245877	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0.015000	0.616915	
mm_103047.1	chr11	69802816	69803016	-	1	NA	NA	NA	-753	NR_027913	74341	Mm.280165	NR_027913		G630025P09Rik	4632403M07Rik	RIKEN cDNA G630025P09 gene	ncRNA	0.090000	0.741294	
mm_141256.1	chr17	27596815	27597015	-	1	NA	NA	NA	26049	NM_001291046	56409	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0.015000	0.502488	
mm_149505.1	chr19	11958540	11958740	+	1	NA	NA	NA	-7204	NM_001033174	76303	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.045000	0.502488	
mm_118212.1	chr13	110127698	110127898	-	1	NA	NA	NA	152408	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding	0.025000	0.522388	-32(TTCCATATAAGG,-,0.00),-30(CCATATAAGGAG,+,0.00)
mm_103797.1	chr11	82889927	82890127	-	1	NA	NA	NA	597	NR_102719	19364	Mm.9286	NM_011235	ENSMUSG00000018841	Rad51d	R51H3|Rad51l3|TRAD|Trad-d5	RAD51 paralog D	protein-coding	0.015000	0.532338	
mm_26685.1	chr3	156562069	156562269	+	1	NA	NA	NA	375	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.080000	0.641791	
mm_28864.1	chr3	97297830	97298030	-	1	NA	NA	NA	-11326	NR_105813	102465206		NR_105813	ENSMUSG00000099036	Mir378c	Gm27930|mmu-mir-378c	microRNA 378c	ncRNA	0.010000	0.507463	
mm_25308.1	chr3	106034577	106034777	+	1	NA	NA	NA	-1782	NM_001080816	229687	Mm.39224	NM_170594	ENSMUSG00000043873	Chil5	Bclp|Bclp1|Bclp2|Chi3l7	chitinase-like 5	protein-coding	0.015000	0.343284	
mm_109354.1	chr12	109615671	109615871	+	1	NA	NA	NA	-2487	NR_029918	723854		NR_029918	ENSMUSG00000065433	Mir370	Mirn370|mir-370|mmu-mir-370	microRNA 370	ncRNA	0.015000	0.482587	
mm_96082.1	chr11	60104965	60105165	+	1	NA	NA	NA	52	NM_009021	19377	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.145000	0.761194	
mm_58299.1	chr6	145865453	145865653	-	1	NA	NA	NA	-133	NM_024469	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.120000	0.731343	
mm_64807.1	chr7	6706316	6706516	-	1	NA	NA	NA	-344	NR_023846	100169889	Mm.491213	NR_023846		Peg3os	Apeg3|Peg3as	Peg3 opposite strand	ncRNA	0.010000	0.492537	
mm_84859.1	chr9	78583140	78583340	-	1	NA	NA	NA	4805	NM_172773	235504	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.020000	0.358209	
mm_25100.1	chr3	101284047	101284247	+	1	NA	NA	NA	3792	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.020000	0.532338	
mm_135955.1	chr16	74644134	74644334	-	1	NA	NA	NA	-233322	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.000000	0.422886	
mm_112708.1	chr13	18842052	18842252	+	1	NA	NA	NA	-106199	NM_175007	218038	Mm.101650	NM_175007	ENSMUSG00000021314	Amph	-	amphiphysin	protein-coding	0.010000	0.442786	
mm_32749.1	chr4	116685499	116685699	+	1	NA	NA	NA	0	NM_011034	18477	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0.105000	0.646766	-32(GGCTATAAAAGC,-,0.00)
mm_167983.1	chrX	166217165	166217365	+	1	NA	NA	NA	-21678	NM_001177961	14758	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	0.000000	0.442786	
mm_131012.1	chr15	103563174	103563374	-	1	NA	NA	NA	1807	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.005000	0.522388	
mm_102154.1	chr11	53705605	53705805	-	1	NA	NA	NA	1614	NM_009012	19360	Mm.4888	NM_009012	ENSMUSG00000020380	Rad50	Mrell|Rad50l	RAD50 double strand break repair protein	protein-coding	0.010000	0.467662	
mm_119461.1	chr14	47068945	47069145	+	1	NA	NA	NA	68	NM_001310544	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.035000	0.532338	
mm_125708.1	chr15	68309680	68309880	+	1	NA	NA	NA	27730	NR_029534	387226		NR_029534	ENSMUSG00000065476	Mir30b	Mirn30b|mir-30b|mmu-mir-30b	microRNA 30b	ncRNA	0.030000	0.417910	
mm_569.1	chr1	38042684	38042884	+	1	NA	NA	NA	44774	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.005000	0.432836	
mm_91758.1	chr10	51453926	51454126	-	1	NA	NA	NA	-26586	NM_008147	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.000000	0.417910	
mm_64578.1	chr7	144941601	144941801	+	1	NA	NA	NA	-1776	NM_007631	12443	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.070000	0.601990	
mm_72420.1	chr8	82054008	82054208	+	1	NA	NA	NA	348478	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.000000	0.427861	
mm_67031.1	chr7	66689413	66689613	-	1	NA	NA	NA	48	NM_080443	117589	Mm.34785	NM_080443	ENSMUSG00000030509	Asb7	AI449039|Asb-7|D030055C23Rik	ankyrin repeat and SOCS box-containing 7	protein-coding	0.035000	0.626866	
mm_52517.1	chr6	115421954	115422154	+	1	NA	NA	NA	-12	NM_011146	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.005000	0.402985	
mm_105458.1	chr11	104550410	104550610	-	1	NA	NA	NA	110	NM_001285990	217232	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	0.085000	0.626866	
mm_68073.1	chr7	101869118	101869318	-	1	NA	NA	NA	1570	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.025000	0.512438	
mm_119144.1	chr14	31255504	31255704	+	1	NA	NA	NA	4115	NM_027088	104416	Mm.3779	NM_027088	ENSMUSG00000021901	Bap1	2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4	Brca1 associated protein 1	protein-coding	0.010000	0.552239	
mm_94142.1	chr10	128734350	128734550	-	1	NA	NA	NA	9606	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.000000	0.482587	
mm_69697.1	chr7	140036282	140036482	-	1	NA	NA	NA	-9	NM_027201	69752	Mm.200818	NM_027201	ENSMUSG00000025470	Zfp511	2410004P19Rik|C86579|Znf511	zinc finger protein 511	protein-coding	0.115000	0.691542	
mm_10129.1	chr2	3780002	3780202	+	1	NA	NA	NA	66644	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.000000	0.343284	
mm_35862.1	chr4	49481023	49481223	-	1	NA	NA	NA	25435	NM_007519	12012	Mm.2859	NM_007519	ENSMUSG00000039653	Baat	AI118337|AI158864|BAT	bile acid-Coenzyme A: amino acid N-acyltransferase	protein-coding	0.005000	0.477612	
mm_99643.1	chr11	105292585	105292785	+	1	NA	NA	NA	39	NM_008626	17534	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0.100000	0.711443	
mm_154634.1	chrX	7762790	7762990	+	1	NA	NA	NA	229	NM_172472	209446	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	0.095000	0.686567	
mm_2551.1	chr1	107917191	107917391	+	1	NA	NA	NA	32	NR_102307	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	0.015000	0.427861	
mm_165324.1	chr2	110419538	110419738	-	1	NA	NA	NA	-56645	NM_026271	67606	Mm.291809	NM_026271	ENSMUSG00000074971	Fibin	1110018M03Rik	fin bud initiation factor homolog (zebrafish)	protein-coding	0.030000	0.432836	
mm_112073.1	chr12	112581090	112581290	-	1	NA	NA	NA	-7594	NM_198411	70435	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.010000	0.507463	
mm_2020.1	chr1	87127985	87128185	+	1	NA	NA	NA	3077	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.005000	0.577114	
mm_39060.1	chr4	154025529	154025729	-	1	NA	NA	NA	415	NM_001163722	68859	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	0.010000	0.552239	-3(CTTTATTTAAGG,-,0.00)
mm_15444.1	chr2	157367088	157367288	+	1	NA	NA	NA	-406	NM_026968	69161	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	0.010000	0.383085	
mm_72244.1	chr8	75033588	75033788	+	1	NA	NA	NA	2	NM_011622	21968	Mm.1967	NM_011622	ENSMUSG00000042870	Tom1	-	target of myb1 trafficking protein	protein-coding	0.100000	0.741294	
mm_71564.1	chr8	53511691	53511891	+	1	NA	NA	NA	89	NM_001005847	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.075000	0.651741	
mm_111632.1	chr12	102439730	102439930	-	1	NA	NA	NA	-17	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.060000	0.611940	
mm_107920.1	chr12	71059283	71059483	+	1	NA	NA	NA	43416	NM_001081195	238247	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|MmRBBP1|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.010000	0.338308	69(GTCTTTAAATGC,-,0.00),78(TGCTTTAAAGGG,-,0.00),79(GCTTTAAAGGGT,+,0.00)
mm_36897.1	chr4	107683452	107683652	-	1	NA	NA	NA	610	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.085000	0.701493	
mm_9567.1	chr1	173979396	173979596	-	1	NA	NA	NA	3348	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.000000	0.268657	
mm_155725.1	chrX	96155376	96155576	+	1	NA	NA	NA	59431	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.005000	0.457711	
mm_121373.1	chr14	118137040	118137240	+	1	NA	NA	NA	13	NM_021434	58245	Mm.275411	NM_021434	ENSMUSG00000022131	Gpr180	AB041545|E130016I23Rik|Itr	G protein-coupled receptor 180	protein-coding	0.115000	0.736318	
mm_28601.1	chr3	94582461	94582661	-	1	NA	NA	NA	155	NM_001082484	76742	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.160000	0.786070	
mm_113063.1	chr13	23740051	23740251	+	1	NA	NA	NA	1344	NM_015786	50708	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	0.035000	0.407960	
mm_13580.1	chr2	112377065	112377265	+	1	NA	NA	NA	-2046	NM_024254	72425	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	0.025000	0.437811	
mm_132623.1	chr16	38892418	38892618	+	1	NA	NA	NA	-9827	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.015000	0.532338	
mm_165598.1	chr3	49051171	49051371	+	1	NA	NA	NA	-442171	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo	0.005000	0.363184	
mm_45449.1	chr5	67428019	67428219	-	1	NA	NA	NA	-320	NM_001164806	666938	Mm.101339	NM_001164806	ENSMUSG00000092060	Bend4	D330027G24Rik|EG666938	BEN domain containing 4	protein-coding	0.070000	0.636816	
mm_103510.1	chr11	76623203	76623403	-	1	NA	NA	NA	-45564	NM_198894	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.090000	0.606965	
mm_146940.1	chr18	32240151	32240351	-	1	NA	NA	NA	-80	NM_133658	13872	Mm.282335	NM_133658	ENSMUSG00000024382	Ercc3	BTF2 p89|Ercc-3|XPB	excision repair cross-complementing rodent repair deficiency, complementation group 3	protein-coding	0.075000	0.537313	
mm_39542.1	chr5	21543413	21543613	+	1	NA	NA	NA	-14	NM_028977	74511	Mm.439963	NM_028977	ENSMUSG00000039883	Lrrc17	37kDa|4833425M04Rik|6130400C22Rik|P37nb	leucine rich repeat containing 17	protein-coding	0.035000	0.522388	
mm_90029.1	chr10	115427226	115427426	+	1	NA	NA	NA	42367	NM_001033261	216345	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0.025000	0.402985	
mm_39137.1	chr4	155217109	155217309	-	1	NA	NA	NA	5326	NM_011385	20481	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.010000	0.447761	
mm_25451.1	chr3	108364882	108365082	+	1	NA	NA	NA	71	NM_026831	68753	Mm.75201	NM_026831	ENSMUSG00000068745	Mybphl	1110037P11Rik	myosin binding protein H-like	protein-coding	0.010000	0.587065	
mm_139711.1	chr17	57459962	57460162	+	1	NA	NA	NA	85252	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.005000	0.328358	
mm_42774.1	chr5	121367001	121367201	+	1	NA	NA	NA	18514	NM_001163470	231712	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.015000	0.507463	
mm_74414.1	chr8	3624902	3625102	-	1	NA	NA	NA	47	NM_001129804	18545	Mm.440882	NM_008790	ENSMUSG00000004630	Pcp2	L7|Pcp-2	Purkinje cell protein 2 (L7)	protein-coding	0.015000	0.567164	
mm_161554.1	chr16	11405647	11405847	+	1	NA	NA	NA	99	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.020000	0.567164	
mm_14574.1	chr2	135646423	135646623	+	1	NA	NA	NA	-63303	NR_015544	320684	Mm.421433	NR_015544	ENSMUSG00000085631	9630028H03Rik	-	RIKEN cDNA 9630028H03 gene	ncRNA	0.010000	0.467662	
mm_118010.1	chr13	100724446	100724646	-	1	NA	NA	NA	6396	NM_009874	12572	Mm.259718	NM_009874	ENSMUSG00000069089	Cdk7	AI323415|AI528512|C230069N13|Cdkn7|Crk4	cyclin-dependent kinase 7	protein-coding	0.005000	0.512438	
mm_5997.1	chr1	58727002	58727202	-	1	NA	NA	NA	-3450	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.000000	0.393035	
mm_124269.1	chr14	102982600	102982800	-	1	NA	NA	NA	-63	NM_177715	239217	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0.150000	0.786070	
mm_33664.1	chr4	133174456	133174656	+	1	NA	NA	NA	-21099	NR_105984	102466215		NR_105984	ENSMUSG00000099202	Mir7017	Gm27945|mmu-mir-7017	microRNA 7017	ncRNA	0.000000	0.412935	
mm_13218.1	chr2	96318281	96318481	+	1	NA	NA	NA	212	NM_001289743	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.020000	0.477612	
mm_97862.1	chr11	83116816	83117016	+	1	NA	NA	NA	71	NM_011407	20555	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0.020000	0.537313	
mm_57878.1	chr6	131245166	131245366	-	1	NA	NA	NA	2096	NM_001170851	16633	Mm.4783	NM_008462	ENSMUSG00000030187	Klra2	Klra30|Ly49b	killer cell lectin-like receptor, subfamily A, member 2	protein-coding	0.005000	0.412935	
mm_12729.1	chr2	78868959	78869159	+	1	NA	NA	NA	12	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.180000	0.810945	
mm_91026.1	chr10	17920102	17920302	-	1	NA	NA	NA	27865	NM_001033432	380629	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.005000	0.502488	
mm_62083.1	chr7	92934220	92934420	+	1	NA	NA	NA	59067	NM_028243	72461	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.015000	0.442786	
mm_28327.1	chr3	89349885	89350085	-	1	NA	NA	NA	43	NM_001037722	11490	Mm.274049	NM_009614	ENSMUSG00000028041	Adam15	AD56|MDC15	a disintegrin and metallopeptidase domain 15 (metargidin)	protein-coding	0.110000	0.756219	
mm_134708.1	chr16	22892159	22892359	-	1	NA	NA	NA	244	NM_001276449	11625	Mm.197554	NM_013465	ENSMUSG00000022868	Ahsg	-	alpha-2-HS-glycoprotein	protein-coding	0.020000	0.472637	
mm_74462.1	chr8	4216891	4217091	-	1	NA	NA	NA	321	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.055000	0.626866	
mm_96419.1	chr11	67255734	67255934	+	1	NA	NA	NA	18022	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.015000	0.477612	
mm_78037.1	chr9	13894749	13894949	+	1	NA	NA	NA	67122	NM_176836	72826	Mm.246174	NM_176836	ENSMUSG00000037808	Fam76b	2810485I05Rik|C78303	family with sequence similarity 76, member B	protein-coding	0.020000	0.437811	
mm_165101.1	chr19	55317925	55318125	+	1	NA	NA	NA	1968	NM_001293686	53611	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.015000	0.462687	
mm_38821.1	chr4	148723258	148723458	-	1	NA	NA	NA	80041	NM_001085505	230909	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	0.025000	0.547264	
mm_89974.1	chr10	111553908	111554108	+	1	NA	NA	NA	40265	NR_045344	71321	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.010000	0.467662	
mm_139506.1	chr17	56304138	56304338	+	1	NA	NA	NA	-75	NM_001111078	18140	Mm.42196	NM_010931	ENSMUSG00000001228	Uhrf1	AL022808|ICBP90|Np95|RNF106	ubiquitin-like, containing PHD and RING finger domains, 1	protein-coding	0.100000	0.691542	74(GGGTCTTTAAAG,-,0.00),75(GGTCTTTAAAGC,-,0.00),76(GTCTTTAAAGCG,+,0.00),77(TCTTTAAAGCGC,+,0.00)
mm_91126.1	chr10	19591607	19591807	-	1	NA	NA	NA	-242	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.035000	0.567164	
mm_26299.1	chr3	142507950	142508150	+	1	NA	NA	NA	11116	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.005000	0.477612	
mm_126407.1	chr15	80255211	80255411	+	1	NA	NA	NA	127	NM_009716	11911	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	0.100000	0.611940	
mm_112512.1	chr13	8995501	8995701	+	1	NA	NA	NA	411	NM_027000	69237	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0.045000	0.527363	-69(CTTTTTAGACCG,+,0.00)
mm_138280.1	chr17	34608888	34609088	+	1	NA	NA	NA	-26	NM_018862	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.020000	0.547264	
mm_144390.1	chr18	20669958	20670158	+	1	NA	NA	NA	4808	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.035000	0.492537	
mm_146265.1	chr18	77847394	77847594	+	1	NA	NA	NA	52944	NM_013831	19201	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.005000	0.417910	
mm_161941.1	chr19	4100680	4100880	+	1	NA	NA	NA	158	NM_008851	18739	Mm.1860	NM_008851	ENSMUSG00000024851	Pitpnm1	DRES9|Mpt-1|Nir-2|PITPnm 1|Pitpnm|R75447|Rd9|RdgB|RdgB1	phosphatidylinositol transfer protein, membrane-associated 1	protein-coding	0.090000	0.636816	
mm_53659.1	chr6	141296879	141297079	+	1	NA	NA	NA	-43574	NR_033555	100093700	Mm.483778	NR_033555	ENSMUSG00000107456	Gm10400	ENSMUSG00000072690	predicted gene 10400	ncRNA	0.010000	0.273632	
mm_119961.1	chr14	55478660	55478860	+	1	NA	NA	NA	2	NM_030686	28200	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	0.075000	0.646766	
mm_142350.1	chr17	43628475	43628675	-	1	NA	NA	NA	1724	NM_001161366	210510	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	0.035000	0.467662	
mm_63694.1	chr7	130624492	130624692	+	1	NA	NA	NA	47108	NM_206856	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.025000	0.582090	
mm_149414.1	chr19	11426105	11426305	+	1	NA	NA	NA	-17353	NM_021718	60361	Mm.33957	NM_021718	ENSMUSG00000056290	Ms4a4b	AI463180|Chandra|Ly116	membrane-spanning 4-domains, subfamily A, member 4B	protein-coding	0.005000	0.402985	
mm_42674.1	chr5	119680129	119680329	+	1	NA	NA	NA	8996	NM_011535	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.020000	0.522388	
mm_158097.1	chrX	101734017	101734217	-	1	NA	NA	NA	30	NM_009910	12766	Mm.12876	NM_009910	ENSMUSG00000050232	Cxcr3	Cd183|Cmkar3	chemokine (C-X-C motif) receptor 3	protein-coding	0.015000	0.547264	
mm_117320.1	chr13	67724202	67724402	-	1	NA	NA	NA	4871	NM_145622	235907	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	0.020000	0.492537	
mm_121452.1	chr14	120478273	120478473	+	1	NA	NA	NA	-88	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.170000	0.810945	-67(TCTTATAGACCC,+,0.00)
mm_164880.1	chr18	58210446	58210646	-	1	NA	NA	NA	-620	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.150000	0.805970	65(CCTCTAAAACCC,+,0.00)
mm_26961.1	chr3	21988168	21988368	-	1	NA	NA	NA	-88384	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.030000	0.497512	
mm_56833.1	chr6	117174597	117174797	-	1	NA	NA	NA	6162	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.005000	0.358209	
mm_7254.1	chr1	93754599	93754799	-	1	NA	NA	NA	139	NM_025920	67026	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	0.180000	0.766169	
mm_64009.1	chr7	140203736	140203936	+	1	NA	NA	NA	-1068	NM_001011814	258055	Mm.377339	NM_001011814	ENSMUSG00000050366	Olfr524	MOR103-14P	olfactory receptor 524	protein-coding	0.010000	0.547264	
mm_123573.1	chr14	66985934	66986134	-	1	NA	NA	NA	22843	NM_009761	12177	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0.010000	0.402985	
mm_107072.1	chr12	16909384	16909584	+	1	NA	NA	NA	14506	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0.005000	0.303483	
mm_171441.1	chr4	141743398	141743598	-	1	NA	NA	NA	-3177	NM_001081408	75986	Mm.30032	NM_001081408	ENSMUSG00000040706	Agmat	5033405N08Rik	agmatine ureohydrolase (agmatinase)	protein-coding	0.040000	0.512438	-30(TTCTATAAAAAC,-,0.00)
mm_98740.1	chr11	96365658	96365858	+	1	NA	NA	NA	0	NM_008266	15407	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0.035000	0.601990	
mm_118717.1	chr14	22202100	22202300	+	1	NA	NA	NA	182488	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.000000	0.432836	
mm_4138.1	chr1	170644496	170644696	+	1	NA	NA	NA	64	NM_177068	320078	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.085000	0.696517	
mm_123720.1	chr14	70152652	70152852	-	1	NA	NA	NA	1039	NM_146055	219158	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	0.010000	0.467662	
mm_80866.1	chr9	98509633	98509833	+	1	NA	NA	NA	19196	NM_009034	19660	Mm.12825	NM_009034	ENSMUSG00000032454	Rbp2	Crbp-2|CrbpII|Rbp-2	retinol binding protein 2, cellular	protein-coding	0.010000	0.517413	-36(GTGTATAAAAGG,-,0.00)
mm_93543.1	chr10	115569648	115569848	-	1	NA	NA	NA	-238	NM_029982	77798	Mm.446685	NM_029982	ENSMUSG00000092210	A930009A15Rik	-	RIKEN cDNA A930009A15 gene	protein-coding	0.005000	0.283582	73(CTTTTTAAAAGG,+,0.00),73(CTTTTTAAAAGG,-,0.00)
mm_147703.1	chr18	60809953	60810153	-	1	NA	NA	NA	-2023	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.015000	0.547264	
mm_123812.1	chr14	70522676	70522876	-	1	NA	NA	NA	1305	NM_011359	20389	Mm.24040	NM_011359	ENSMUSG00000022097	Sftpc	Bricd6|SP-C|SP5|SPC|Sftp-2|Sftp2|pro-SpC	surfactant associated protein C	protein-coding	0.035000	0.582090	
mm_1947.1	chr1	86312507	86312707	+	1	NA	NA	NA	9386	NM_145222	227327	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.005000	0.477612	
mm_116821.1	chr13	54589924	54590124	-	1	NA	NA	NA	50	NM_178605	28126	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	0.050000	0.512438	
mm_51243.1	chr6	71683169	71683369	+	1	NA	NA	NA	-24412	NM_178608	52250	Mm.146332	NM_178608	ENSMUSG00000052852	Reep1	D6Ertd253e	receptor accessory protein 1	protein-coding	0.025000	0.487562	
mm_6311.1	chr1	71593029	71593229	-	1	NA	NA	NA	35973	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.030000	0.527363	
mm_31979.1	chr4	89050177	89050377	+	1	NA	NA	NA	-30	NR_033533	100040617	Mm.171720	NR_033533	ENSMUSG00000085183	Gm12603	OTTMUSG00000007693	predicted gene 12603	ncRNA	0.005000	0.358209	
mm_94622.1	chr11	16778047	16778247	+	1	NA	NA	NA	25944	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.005000	0.417910	
mm_87554.1	chr10	54117979	54118179	+	1	NA	NA	NA	42157	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.010000	0.512438	
mm_149597.1	chr19	16315669	16315869	+	1	NA	NA	NA	-765	NR_105832	102465218		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.005000	0.417910	59(TCTTTTAGAGGG,+,0.00)
mm_38606.1	chr4	141860582	141860782	-	1	NA	NA	NA	14238	NM_025994	27984	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	0.045000	0.611940	
mm_100660.1	chr11	3266228	3266428	-	1	NA	NA	NA	58	NM_007879	13494	Mm.3250	NM_007879	ENSMUSG00000020457	Drg1	AA408859|AI132520|Nedd3	developmentally regulated GTP binding protein 1	protein-coding	0.110000	0.666667	
mm_3691.1	chr1	153751873	153752073	+	1	NA	NA	NA	2547	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.020000	0.532338	
mm_48191.1	chr5	137529054	137529254	-	1	NA	NA	NA	440	NR_105846	102465227		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0.025000	0.577114	
mm_61914.1	chr7	90146894	90147094	+	1	NA	NA	NA	16762	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.313433	
mm_104469.1	chr11	95309472	95309672	-	1	NA	NA	NA	674	NM_001195004	217127	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	0.050000	0.567164	
mm_32559.1	chr4	109475790	109475990	+	1	NA	NA	NA	615	NM_013876	29864	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0.025000	0.512438	
mm_4907.1	chr1	190159705	190159905	+	1	NA	NA	NA	10875	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding	0.010000	0.462687	-24(TCCTTTAAAAAC,-,0.00),-23(CCTTTAAAAACA,+,0.00)
mm_54815.1	chr6	42349605	42349805	-	1	NA	NA	NA	-123	NM_011777	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.050000	0.656716	
mm_77506.1	chr8	122699362	122699562	-	1	NA	NA	NA	-353	NM_009824	12398	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0.000000	0.582090	
mm_48802.1	chr5	148959195	148959395	-	1	NA	NA	NA	9045	NR_040686	71473	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	0.045000	0.621891	
mm_96001.1	chr11	59319583	59319783	+	1	NA	NA	NA	12753	NM_139298	216795	Mm.218794	NM_139298	ENSMUSG00000000126	Wnt9a	Wnt14	wingless-type MMTV integration site family, member 9A	protein-coding	0.000000	0.358209	
mm_68389.1	chr7	109493952	109494152	-	1	NA	NA	NA	-314	NM_001170913	330627	Mm.183528	NM_181853	ENSMUSG00000031026	Trim66	Kiaa0298-hp|Tif1d	tripartite motif-containing 66	protein-coding	0.015000	0.487562	
mm_89804.1	chr10	102546616	102546816	+	1	NA	NA	NA	34494	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding	0.000000	0.398010	
mm_94744.1	chr11	21097268	21097468	+	1	NA	NA	NA	6044	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.000000	0.258706	-28(TGCCTTAAAAGC,-,0.00),-27(GCCTTAAAAGCC,+,0.00),-26(CCTTAAAAGCCA,+,0.00)
mm_80797.1	chr9	96258657	96258857	+	1	NA	NA	NA	52	NM_001184709	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.010000	0.517413	
mm_12437.1	chr2	70677945	70678145	+	1	NA	NA	NA	16536	NM_027352	70231	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|ENSMUSG00000075299|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.045000	0.557214	
mm_146195.1	chr18	76241209	76241409	+	1	NA	NA	NA	-392	NM_010754	17126	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0.095000	0.736318	
mm_3488.1	chr1	150105745	150105945	+	1	NA	NA	NA	5814	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.283582	
mm_166707.1	chr6	116458784	116458984	-	1	NA	NA	NA	2294	NM_009662	11689	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0.010000	0.447761	
mm_125932.1	chr15	76247504	76247704	+	1	NA	NA	NA	-587	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.045000	0.621891	
mm_116609.1	chr13	48819651	48819851	-	1	NA	NA	NA	51134	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.015000	0.587065	
mm_150694.1	chr19	42170481	42170681	+	1	NA	NA	NA	14	NM_001164531	319740	Mm.287359	NM_177319	ENSMUSG00000018820	Zfyve27	2210011N02Rik|9530077C24Rik|AI426636|AI593546|AI835681	zinc finger, FYVE domain containing 27	protein-coding	0.140000	0.716418	
mm_74837.1	chr8	23231443	23231643	-	1	NA	NA	NA	6125	NM_024240	109145	Mm.27945	NM_024240	ENSMUSG00000031546	Gins4	2810037C03Rik|4933405K01Rik|Sld5	GINS complex subunit 4 (Sld5 homolog)	protein-coding	0.020000	0.402985	5(GGTTTTATAAAG,-,0.00)
mm_102688.1	chr11	65365769	65365969	-	1	NA	NA	NA	-78036	NR_040280	327946	Mm.383301	NR_040280	ENSMUSG00000085162	Gm12295	A730013G04|OTTMUSG00000005904	predicted gene 12295	ncRNA	0.040000	0.477612	
mm_155609.1	chrX	83043134	83043334	+	1	NA	NA	NA	94364	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.005000	0.467662	
mm_63754.1	chr7	131106289	131106489	+	1	NA	NA	NA	39894	NM_173409	233918	Mm.78341	NM_173409	ENSMUSG00000013668	4933402N03Rik	4930412O05	RIKEN cDNA 4933402N03 gene	protein-coding	0.025000	0.552239	
mm_46213.1	chr5	98185918	98186118	-	1	NA	NA	NA	5149	NM_029947	77630	Mm.332511	NM_029947	ENSMUSG00000035456	Prdm8	4930565F05Rik|PFM5	PR domain containing 8	protein-coding	0.160000	0.781095	
mm_134961.1	chr16	31421273	31421473	-	1	NA	NA	NA	-924	NM_175177	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.010000	0.462687	
mm_144494.1	chr18	24205642	24205842	+	1	NA	NA	NA	-252	NM_001160404	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.195000	0.840796	
mm_38500.1	chr4	141078220	141078420	-	1	NA	NA	NA	25	NM_025383	66147	Mm.21187	NM_025383	ENSMUSG00000028923	Necap2	1110005F07Rik|AA409105|C78898	NECAP endocytosis associated 2	protein-coding	0.090000	0.631841	
mm_52653.1	chr6	117841113	117841313	+	1	NA	NA	NA	32	NM_001346648	232337	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	0.155000	0.746269	
mm_140518.1	chr17	6079627	6079827	-	1	NA	NA	NA	12	NM_001111017	321007	Mm.5548	NM_177311	ENSMUSG00000015659	Serac1	4930511N22Rik|D17Ertd141e	serine active site containing 1	protein-coding	0.095000	0.686567	
mm_101748.1	chr11	43379339	43379539	-	1	NA	NA	NA	-4978	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.020000	0.477612	
mm_168144.1	chr10	33797779	33797979	+	1	NA	NA	NA	-15764	NM_001101452	215895	Mm.473684	NM_001101452	ENSMUSG00000090298	Sult3a2	EG215895|Gm4794	sulfotransferase family 3A, member 2	protein-coding	0.015000	0.492537	-24(TCCTTTATAAAG,-,0.00),-22(CTTTATAAAGCA,+,0.00)
mm_32322.1	chr4	103676709	103676909	+	1	NA	NA	NA	294309	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA	0.000000	0.412935	48(TCTTTTATATCC,+,0.00)
mm_153672.1	chr19	44396045	44396245	-	1	NA	NA	NA	11564	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.020000	0.477612	
mm_136419.1	chr16	93970986	93971186	-	1	NA	NA	NA	37751	NM_019500	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.035000	0.572139	
mm_121150.1	chr14	101910720	101910920	+	1	NA	NA	NA	70197	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.035000	0.437811	
mm_46954.1	chr5	114970780	114970980	-	1	NA	NA	NA	182	NM_009327	21405	Mm.332607	NM_009327	ENSMUSG00000029556	Hnf1a	AI323641|HNF1|HNF1-alpha|HNF1[a]|Hnf-1|Hnf1alpha|LFB1|Tcf-1|Tcf1	HNF1 homeobox A	protein-coding	0.060000	0.696517	
mm_76997.1	chr8	107096436	107096636	-	1	NA	NA	NA	9	NM_001286200	21750	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	0.100000	0.686567	
mm_172305.1	chr7	104315538	104315738	+	1	NA	NA	NA	-143	NM_023835	76681	Mm.458309	NM_023835	ENSMUSG00000066258	Trim12a	2310043C01Rik|Trim12	tripartite motif-containing 12A	protein-coding	0.005000	0.517413	
mm_159611.1	chr4	132007150	132007350	-	1	NA	NA	NA	41828	NM_001128606	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.030000	0.552239	
mm_104929.1	chr11	100029785	100029985	-	1	NA	NA	NA	-17	NM_013570	16671	Mm.439738	NM_013570	ENSMUSG00000057723	Krt33b	Ha3|Ha4|Krt1-3|mHa3	keratin 33B	protein-coding	0.015000	0.507463	
mm_98639.1	chr11	96194207	96194407	+	1	NA	NA	NA	-54	NM_008267	15408	Mm.57221	NM_008267	ENSMUSG00000049604	Hoxb13	-	homeobox B13	protein-coding	0.060000	0.606965	
mm_108324.1	chr12	79769952	79770152	+	1	NA	NA	NA	154681	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.020000	0.442786	
mm_163094.1	chr11	69734733	69734933	-	1	NA	NA	NA	23800	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.005000	0.547264	
mm_35511.1	chr4	41094730	41094930	-	1	NA	NA	NA	3353	NM_016689	11828	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	0.020000	0.567164	
mm_162274.1	chr1	12615669	12615869	+	1	NA	NA	NA	-51794	NR_045297	329096	Mm.417782	NR_045297	ENSMUSG00000097171	Gm17644	4932411L15	predicted gene, 17644	ncRNA	0.005000	0.442786	
mm_58180.1	chr6	142867827	142868027	-	1	NA	NA	NA	53696	NR_045707	665037	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037|ENSMUSG00000072683	predicted gene 7457	ncRNA	0.010000	0.452736	-29(GCTTTTCTAGGT,+,0.00)
mm_42710.1	chr5	120431834	120432034	+	1	NA	NA	NA	48	NM_008499	16873	Mm.5151	NM_008499	ENSMUSG00000029595	Lhx5	Lim2	LIM homeobox protein 5	protein-coding	0.115000	0.656716	
mm_118047.1	chr13	101701998	101702198	-	1	NA	NA	NA	-9468	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.005000	0.368159	
mm_7744.1	chr1	131054792	131054992	-	1	NA	NA	NA	35047	NM_010548	16153	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.030000	0.562189	48(GTTTTTATGGAA,+,0.00)
mm_70436.1	chr8	11558359	11558559	+	1	NA	NA	NA	49	NM_001302459	26356	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.115000	0.696517	
mm_26995.1	chr3	25818740	25818940	-	1	NA	NA	NA	334467	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.010000	0.363184	
mm_91434.1	chr10	33624063	33624263	-	1	NA	NA	NA	437	NM_175448	215890	Mm.94461	NM_175448	ENSMUSG00000019785	Clvs2	A330019N05Rik|Rlbp1l2	clavesin 2	protein-coding	0.025000	0.587065	
mm_21187.1	chr2	155299563	155299763	-	1	NA	NA	NA	23299	NR_046364	66734	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0.010000	0.462687	
mm_84372.1	chr9	64951517	64951717	-	1	NA	NA	NA	-10	NM_144813	214111	Mm.156124	NM_144813	ENSMUSG00000034452	Slc24a1	-	solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	protein-coding	0.030000	0.527363	
mm_41732.1	chr5	102669473	102669673	+	1	NA	NA	NA	-99237	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.000000	0.303483	
mm_83339.1	chr9	44279245	44279445	-	1	NA	NA	NA	8899	NM_138955	192663	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP-binding cassette, sub-family G (WHITE), member 4	protein-coding	0.015000	0.542289	
mm_32825.1	chr4	117552860	117553060	+	1	NA	NA	NA	2595	NM_080469	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.005000	0.447761	
mm_168651.1	chr11	8623731	8623931	-	1	NA	NA	NA	40704	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.040000	0.497512	-39(CCTTATAAATCC,+,0.00),66(TTGCTTTAAAGG,-,0.00),67(TGCTTTAAAGGA,-,0.00),68(GCTTTAAAGGAG,+,0.00)
mm_21995.1	chr2	167661453	167661653	-	1	NA	NA	NA	-9	NM_145538	407243	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.205000	0.835821	
mm_103604.1	chr11	78422132	78422332	-	1	NA	NA	NA	-47	NM_022411	20500	Mm.274058	NM_022411	ENSMUSG00000001095	Slc13a2	Nadc1|mNaDC-1	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2	protein-coding	0.020000	0.562189	-32(CTTTATATAAGC,+,0.00),-32(CTTTATATAAGC,-,0.00)
mm_728.1	chr1	43098636	43098836	+	1	NA	NA	NA	26	NM_133818	98404	Mm.28817	NM_133818	ENSMUSG00000010290	AI597479	-	expressed sequence AI597479	protein-coding	0.100000	0.686567	
mm_74503.1	chr8	8457336	8457536	-	1	NA	NA	NA	203337	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.030000	0.477612	
mm_103165.1	chr11	70455864	70456064	-	1	NA	NA	NA	-3658	NM_001029929	574428	Mm.472771	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.015000	0.547264	
mm_90855.1	chr10	8819725	8819925	-	1	NA	NA	NA	66245	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.015000	0.482587	-31(CCTTAAAGACAC,+,0.00)
mm_41227.1	chr5	88657357	88657557	+	1	NA	NA	NA	18123	NM_001098476	231413	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.010000	0.358209	
mm_94403.1	chr11	5784692	5784892	+	1	NA	NA	NA	-3691	NM_001146309	13169	Mm.256925	NM_013810	ENSMUSG00000020476	Dbnl	Abp1|SH3P7|mAbp1	drebrin-like	protein-coding	0.015000	0.393035	
mm_92486.1	chr10	78297896	78298096	-	1	NA	NA	NA	42211	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.015000	0.567164	
mm_146123.1	chr18	74442416	74442616	+	1	NA	NA	NA	-103	NM_201600	17919	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	0.165000	0.786070	
mm_109229.1	chr12	108835958	108836158	+	1	NA	NA	NA	-182	NM_181328	214663	Mm.266264	NM_181328	ENSMUSG00000021265	Slc25a29	C030003J19Rik|CACL|mCACL	solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29	protein-coding	0.100000	0.706468	
mm_46496.1	chr5	105132493	105132693	-	1	NA	NA	NA	6959	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.368159	
mm_19336.1	chr2	90580382	90580582	-	1	NA	NA	NA	165	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.165000	0.820896	
mm_111065.1	chr12	80115114	80115314	-	1	NA	NA	NA	-2201	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.065000	0.611940	
mm_89620.1	chr10	96181603	96181803	+	1	NA	NA	NA	-44504	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.015000	0.492537	
mm_96602.1	chr11	69091031	69091231	+	1	NA	NA	NA	2603	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.000000	0.472637	
mm_168398.1	chr1	129308136	129308336	+	1	NA	NA	NA	34932	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	0.010000	0.328358	
mm_63249.1	chr7	126595102	126595302	+	1	NA	NA	NA	-292	NM_145636	246779	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	0.010000	0.582090	
mm_57235.1	chr6	123282810	123283010	-	1	NA	NA	NA	6961	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.010000	0.402985	
mm_147136.1	chr18	36286885	36287085	-	1	NA	NA	NA	5823	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.095000	0.711443	
mm_20583.1	chr2	131148374	131148574	-	1	NA	NA	NA	11546	NM_026091	67326	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	0.010000	0.562189	
mm_146916.1	chr18	31597687	31597887	-	1	NA	NA	NA	12115	NM_026165	67453	Mm.23896	NM_026165	ENSMUSG00000024259	Slc25a46	1200007B05Rik|AI325987	solute carrier family 25, member 46	protein-coding	0.000000	0.358209	29(GTCTATAAAAAA,-,0.00)
mm_60072.1	chr7	33653373	33653573	+	1	NA	NA	NA	-192	NR_045685	353109	Mm.63867	NR_045685	ENSMUSG00000083896	Scgb2b23-ps	1700028O08Rik|Abpbg23-ps|C2y|Scgb2b1|Scgb2b1-ps	secretoglobin, family 2B, member 23, pseudogene	pseudo	0.050000	0.457711	
mm_13179.1	chr2	93027850	93028050	+	1	NA	NA	NA	-1398	NR_110333	433456	Mm.235231	NM_001002794	ENSMUSG00000075027	4631405J19Rik	-	RIKEN cDNA 4631405J19 gene	ncRNA	0.015000	0.542289	
mm_91851.1	chr10	59164442	59164642	-	1	NA	NA	NA	57305	NM_001024911	103080	Mm.346842	NM_001024910	ENSMUSG00000019917	Sept10	4921515A04Rik|9430099J10Rik|AA408298|AI874685	septin 10	protein-coding	0.005000	0.328358	79(CCTTTTATGACT,+,0.00)
mm_68446.1	chr7	109991335	109991535	-	1	NA	NA	NA	-5205	NM_153525	233724	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	0.000000	0.417910	
mm_91658.1	chr10	42762246	42762446	-	1	NA	NA	NA	850	NM_153055	140740	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0.040000	0.567164	
mm_127786.1	chr15	3542459	3542659	-	1	NA	NA	NA	39283	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.000000	0.353234	
mm_102396.1	chr11	59002115	59002315	-	1	NA	NA	NA	24122	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.030000	0.542289	
mm_93514.1	chr10	115250436	115250636	-	1	NA	NA	NA	957	NM_025706	66687	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0.055000	0.472637	
mm_160449.1	chr8	105375079	105375279	+	1	NA	NA	NA	-202	NM_001081333	102075	Mm.32034	NM_175321	ENSMUSG00000014782	Plekhg4	4931414L13Rik|AI448583|mFLJ00068	pleckstrin homology domain containing, family G (with RhoGef domain) member 4	protein-coding	0.035000	0.572139	
mm_41424.1	chr5	90892410	90892610	+	1	NA	NA	NA	1265	NM_008176	14825	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.010000	0.452736	
mm_31776.1	chr4	63560094	63560294	+	1	NA	NA	NA	-166	NM_144905	230279	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.020000	0.567164	22(CCTTTTCAACAC,+,0.00)
mm_69457.1	chr7	133123234	133123434	-	1	NA	NA	NA	149	NM_009980	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.080000	0.681592	
mm_65056.1	chr7	18746560	18746760	-	1	NA	NA	NA	28570	NM_001004152	243862	Mm.389833	NM_001004152	ENSMUSG00000044903	Psg22	AA408604|cea9	pregnancy-specific glycoprotein 22	protein-coding	0.030000	0.572139	
mm_54509.1	chr6	35511387	35511587	-	1	NA	NA	NA	28401	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.005000	0.303483	
mm_160263.1	chr7	109781905	109782105	-	1	NA	NA	NA	-460	NM_020610	78593	Mm.275374	NM_020610	ENSMUSG00000034825	Nrip3	A330103B05Rik|D7H11orf14|ICRFP703B1614Q5.2	nuclear receptor interacting protein 3	protein-coding	0.060000	0.651741	
mm_46949.1	chr5	114923672	114923872	-	1	NA	NA	NA	532	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.030000	0.427861	
mm_2602.1	chr1	120055135	120055335	+	1	NA	NA	NA	18545	NM_019432	170706	Mm.24750	NM_019432	ENSMUSG00000050777	Tmem37	AI173373|AW540203|Pr|Pr1	transmembrane protein 37	protein-coding	0.010000	0.517413	
mm_50851.1	chr6	54888733	54888933	+	1	NA	NA	NA	71917	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.000000	0.298507	
mm_15980.1	chr2	166792431	166792631	+	1	NA	NA	NA	-1236	NM_023815	76367	Mm.330796	NM_023815	ENSMUSG00000042854	Trp53rkb	2810408M09Rik|4933401B08Rik|5630401H01Rik|Nori-2|PRPK|Tp53rk|Trp53rk|Trp53tk|mNori-2p	transformation related protein 53 regulating kinase B	protein-coding	0.020000	0.472637	
mm_35401.1	chr4	34687261	34687461	-	1	NA	NA	NA	77	NM_011895	24060	Mm.281885	NM_011895	ENSMUSG00000028293	Slc35a1	AA408150|AI314851	solute carrier family 35 (CMP-sialic acid transporter), member 1	protein-coding	0.140000	0.716418	
mm_157297.1	chrX	20927966	20928166	-	1	NA	NA	NA	3489	NM_008823	18636	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	0.015000	0.567164	
mm_69986.1	chr7	142380843	142381043	-	1	NA	NA	NA	6927	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.005000	0.477612	
mm_162562.1	chr1	172317472	172317672	+	1	NA	NA	NA	5205	NM_080419	140559	Mm.271717	NM_080419	ENSMUSG00000038034	Igsf8	ESTM34|EWI-2|KCT-4|PGRL	immunoglobulin superfamily, member 8	protein-coding	0.050000	0.601990	
mm_59397.1	chr7	26764562	26764762	+	1	NA	NA	NA	7520	NM_007814	13090	Mm.14098	NM_007814	ENSMUSG00000066704	Cyp2b19	CYPIIB19	cytochrome P450, family 2, subfamily b, polypeptide 19	protein-coding	0.000000	0.407960	
mm_143475.1	chr17	71256740	71256940	-	1	NA	NA	NA	52186	NM_001164885	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.020000	0.542289	
mm_115180.1	chr13	108446575	108446775	+	1	NA	NA	NA	130338	NM_178683	218581	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.020000	0.368159	
mm_47733.1	chr5	130172367	130172567	-	1	NA	NA	NA	648	NM_001199059	56715	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.020000	0.517413	
mm_165579.1	chr3	28431431	28431631	+	1	NA	NA	NA	11588	NR_130342	100628591		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA	0.005000	0.427861	
mm_170278.1	chr18	27463045	27463245	-	1	NA	NA	NA	-1097019	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.025000	0.482587	
mm_148741.1	chr19	5953525	5953725	+	1	NA	NA	NA	10581	NM_001164057	18969	Mm.209931	NM_008893	ENSMUSG00000024833	Pola2	AI573378	polymerase (DNA directed), alpha 2	protein-coding	0.040000	0.572139	
mm_70252.1	chr8	3493074	3493274	+	1	NA	NA	NA	36	NM_080461	140482	Mm.299073	NM_080461	ENSMUSG00000047264	Zfp358	Zfend	zinc finger protein 358	protein-coding	0.120000	0.776119	
mm_16359.1	chr2	174442135	174442335	+	1	NA	NA	NA	-3196	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.005000	0.358209	
mm_25330.1	chr3	106569514	106569714	+	1	NA	NA	NA	-21812	NM_133869	99712	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.000000	0.412935	
mm_80196.1	chr9	72396258	72396458	+	1	NA	NA	NA	-42171	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.005000	0.472637	72(GCTTTTCTGGGC,+,0.00)
mm_128927.1	chr15	74636154	74636354	-	1	NA	NA	NA	64	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.005000	0.522388	
mm_164818.1	chr18	34954572	34954772	+	1	NA	NA	NA	-321	NM_010481	15526	Mm.209419	NM_010481	ENSMUSG00000024359	Hspa9	74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74	heat shock protein 9	protein-coding	0.090000	0.562189	
mm_125277.1	chr15	36210436	36210636	+	1	NA	NA	NA	29628	NR_106173	102465888		NR_106173	ENSMUSG00000098457	Mir8097	Gm27497|mmu-mir-8097	microRNA 8097	ncRNA	0.105000	0.716418	
mm_86464.1	chr10	4429172	4429372	+	1	NA	NA	NA	-106	NR_002891	433224	Mm.153111	NR_002891		Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	0.015000	0.462687	
mm_79863.1	chr9	65032646	65032846	+	1	NA	NA	NA	288	NM_028906	74388	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	0.120000	0.726368	
mm_117775.1	chr13	96666618	96666818	-	1	NA	NA	NA	4218	NM_008255	15357	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0.015000	0.492537	
mm_54598.1	chr6	38299163	38299363	-	1	NA	NA	NA	-4	NM_172467	209032	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	0.090000	0.731343	
mm_38006.1	chr4	133722803	133723003	-	1	NA	NA	NA	-5795	NR_106086	102465707		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	0.020000	0.577114	
mm_163033.1	chr11	52230778	52230978	+	1	NA	NA	NA	-1117	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.015000	0.552239	
mm_30569.1	chr4	3791898	3792098	+	1	NA	NA	NA	43657	NM_026147	67427	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.005000	0.467662	
mm_69436.1	chr7	132852563	132852763	-	1	NA	NA	NA	-16	NM_001347629	72096	Mm.28631	NM_028095	ENSMUSG00000030960	Mettl10	2010208K18Rik	methyltransferase like 10	protein-coding	0.070000	0.631841	
mm_8588.1	chr1	156005662	156005862	-	1	NA	NA	NA	29055	NM_001160019	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.000000	0.328358	
mm_41405.1	chr5	90786482	90786682	+	1	NA	NA	NA	481	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.015000	0.527363	
mm_113745.1	chr13	44730496	44730696	+	1	NA	NA	NA	-178	NM_021878	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.115000	0.756219	
mm_50841.1	chr6	54816813	54817013	+	1	NA	NA	NA	-3	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.200000	0.805970	
mm_169850.1	chr1	63200134	63200334	+	1	NA	NA	NA	-124	NM_001285937	73884	Mm.86986	NM_028673	ENSMUSG00000027520	Zdbf2	4930431J08Rik|9330107J05Rik	zinc finger, DBF-type containing 2	protein-coding	0.060000	0.522388	
mm_160883.1	chr11	69655347	69655547	+	1	NA	NA	NA	410	NM_009235	20670	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0.045000	0.626866	
mm_163461.1	chr12	100134364	100134564	-	1	NA	NA	NA	22133	NM_008947	19179	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.045000	0.557214	
mm_34387.1	chr4	144923886	144924086	+	1	NA	NA	NA	30849	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.020000	0.487562	
mm_166731.1	chr6	122578090	122578290	-	1	NA	NA	NA	24254	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.000000	0.427861	24(GGGCATTAAAAG,-,0.00)
mm_18051.1	chr2	39190617	39190817	-	1	NA	NA	NA	13	NM_178778	320271	Mm.204836	NM_178778	ENSMUSG00000035236	Scai	9330112M16|A930041I02Rik|AI662729	suppressor of cancer cell invasion	protein-coding	0.105000	0.731343	
mm_102533.1	chr11	61174860	61175060	-	1	NA	NA	NA	99	NM_001004143	216825	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	0.115000	0.731343	
mm_144967.1	chr18	37824859	37825059	+	1	NA	NA	NA	5413	NM_033583	93708	Mm.247203	NM_033583	ENSMUSG00000102543	Pcdhgc5	-	protocadherin gamma subfamily C, 5	protein-coding	0.015000	0.577114	
mm_42486.1	chr5	115471592	115471792	+	1	NA	NA	NA	5426	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.010000	0.477612	
mm_80364.1	chr9	75314072	75314272	+	1	NA	NA	NA	104	NM_138719	14697	Mm.17604	NM_010313	ENSMUSG00000032192	Gnb5	GBS|Gbeta5|flr	guanine nucleotide binding protein (G protein), beta 5	protein-coding	0.130000	0.721393	
mm_39941.1	chr5	31814228	31814428	+	1	NA	NA	NA	116278	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.010000	0.393035	
mm_98219.1	chr11	88047575	88047775	+	1	NA	NA	NA	302	NM_173374	110809	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	0.110000	0.676617	
mm_97814.1	chr11	82962775	82962975	+	1	NA	NA	NA	-2194	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.005000	0.353234	
mm_92496.1	chr10	78320606	78320806	-	1	NA	NA	NA	19501	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.005000	0.587065	
mm_59816.1	chr7	29179444	29179644	+	1	NA	NA	NA	1129	NM_026545	57296	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	0.015000	0.512438	
mm_12605.1	chr2	74681899	74682099	+	1	NA	NA	NA	-324	NM_008273	15431	Mm.207763	NM_008273	ENSMUSG00000042499	Hoxd11	E230017H14Rik|Hox-4.6|Hox-5.4|Hox-5.5	homeobox D11	protein-coding	0.100000	0.746269	
mm_171842.1	chr5	15670888	15671088	+	1	NA	NA	NA	-9722	NR_001585	75858	Mm.359463	NR_001585	ENSMUSG00000089871	Speer4cos	4930568L21Rik|SPEER-7|Speer7-ps|Speer7-ps1	spermatogenesis associated glutamate (E)-rich protein 4C, opposite strand transcript	pseudo	0.040000	0.522388	
mm_155688.1	chrX	93968586	93968786	+	1	NA	NA	NA	30	NR_028320	385493	Mm.328014	NM_001033480	ENSMUSG00000081044	AU015836	-	expressed sequence AU015836	ncRNA	0.040000	0.572139	
mm_152487.1	chr19	11050339	11050539	-	1	NA	NA	NA	127	NR_102366	107350	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.010000	0.427861	
mm_25893.1	chr3	131110552	131110752	+	1	NA	NA	NA	355	NM_001276402	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.060000	0.572139	
mm_45426.1	chr5	66689842	66690042	-	1	NA	NA	NA	-13445	NR_102714	101202684	Mm.381468	NR_102714	ENSMUSG00000087601	Uchl1os	Gm16832|Uchl1as	ubiquitin carboxy-terminal hydrolase L1, opposite strand	ncRNA	0.015000	0.532338	
mm_55621.1	chr6	72235125	72235325	-	1	NA	NA	NA	352	NM_153778	71093	Mm.87449	NM_153778	ENSMUSG00000037621	Atoh8	4933425C05Rik|Hath6|Math6|bHLHa21|okadin	atonal bHLH transcription factor 8	protein-coding	0.140000	0.751244	
mm_51120.1	chr6	68016611	68016811	+	1	NA	NA	NA	-451012	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.000000	0.487562	
mm_38143.1	chr4	134853150	134853350	-	1	NA	NA	NA	95	NM_025382	66146	Mm.99793	NM_025382	ENSMUSG00000028826	Tmem57	1110007C24Rik|9230118A01Rik|AI317300|AI606104|C61	transmembrane protein 57	protein-coding	0.120000	0.751244	
mm_124456.1	chr14	119099322	119099522	-	1	NA	NA	NA	12	NM_001081252	66435	Mm.213406	NM_025561	ENSMUSG00000042104	Uggt2	1810064L21Rik|3110001A05Rik|3110027P15Rik|A230065J02Rik|AW047562|Ugcgl2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding	0.115000	0.721393	
mm_30460.1	chr3	153944557	153944757	-	1	NA	NA	NA	-14	NM_007382	11364	Mm.10530	NM_007382	ENSMUSG00000062908	Acadm	AU018656|MCAD	acyl-Coenzyme A dehydrogenase, medium chain	protein-coding	0.045000	0.621891	
mm_72209.1	chr8	72646347	72646547	+	1	NA	NA	NA	-264	NM_176940	319555	Mm.212927	NM_176940	ENSMUSG00000048148	Nwd1	A230063L24Rik	NACHT and WD repeat domain containing 1	protein-coding	0.030000	0.572139	
mm_97960.1	chr11	83740576	83740776	+	1	NA	NA	NA	-6264	NM_183249	66107	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.010000	0.412935	
mm_8270.1	chr1	139494590	139494790	-	1	NA	NA	NA	-7017	NM_031164	14060	Mm.30105	NM_031164	ENSMUSG00000026368	F13b	Cf-13b|Cf13b	coagulation factor XIII, beta subunit	protein-coding	0.005000	0.452736	
mm_83190.1	chr9	41012806	41013006	-	1	NA	NA	NA	-8278	NM_019465	54698	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	0.015000	0.378109	
mm_70357.1	chr8	5640121	5640321	+	1	NA	NA	NA	-534934	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.035000	0.567164	
mm_141252.1	chr17	27580118	27580318	-	1	NA	NA	NA	-14491	NM_001002895	106672	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251	expressed sequence AI413582	protein-coding	0.040000	0.462687	
mm_79588.1	chr9	58275343	58275543	+	1	NA	NA	NA	22279	NM_026942	69106	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.020000	0.462687	
mm_3122.1	chr1	134646653	134646853	+	1	NA	NA	NA	72	NM_009307	20980	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194	synaptotagmin II	protein-coding	0.115000	0.716418	
mm_122480.1	chr14	45658011	45658211	-	1	NA	NA	NA	32	NM_001039106	114874	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	0.145000	0.756219	
mm_146046.1	chr18	69593370	69593570	+	1	NA	NA	NA	247749	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.035000	0.467662	
mm_52699.1	chr6	119236420	119236620	+	1	NA	NA	NA	-6	NM_001033382	319734	Mm.440773	NM_001033382	ENSMUSG00000041460	Cacna2d4	5730412N02Rik|BE686333	calcium channel, voltage-dependent, alpha 2/delta subunit 4	protein-coding	0.005000	0.582090	
mm_91536.1	chr10	39133821	39134021	-	1	NA	NA	NA	-26	NM_183254	66337	Mm.45187	NM_183254	ENSMUSG00000051736	Fam229b	1700025K23Rik	family with sequence similarity 229, member B	protein-coding	0.075000	0.587065	
mm_160664.1	chr9	119977020	119977220	-	1	NA	NA	NA	7538	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.020000	0.587065	
mm_46883.1	chr5	113945170	113945370	-	1	NA	NA	NA	-36564	NM_011779	23790	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0.020000	0.557214	
mm_171207.1	chr3	58104190	58104390	-	1	NA	NA	NA	59517	NR_040538	67850	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	0.035000	0.462687	
mm_82791.1	chr9	29368133	29368333	-	1	NA	NA	NA	594896	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.010000	0.363184	
mm_8405.1	chr1	151520676	151520876	-	1	NA	NA	NA	-19953	NM_011277	19821	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0.040000	0.497512	-21(TCCTTTATAAGA,-,0.00)
mm_96115.1	chr11	60699774	60699974	+	1	NA	NA	NA	184	NM_008502	16897	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	lethal giant larvae homolog 1 (Drosophila)	protein-coding	0.160000	0.766169	
mm_77718.1	chr8	126594465	126594665	-	1	NA	NA	NA	-1129	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.085000	0.611940	
mm_118289.1	chr13	112927519	112927719	-	1	NA	NA	NA	-174	NM_172594	218629	Mm.35094	NM_172594	ENSMUSG00000042426	Dhx29	3732415M03|AU043276|Ddxx|E130202M19Rik	DEAH (Asp-Glu-Ala-His) box polypeptide 29	protein-coding	0.090000	0.651741	
mm_106163.1	chr11	116653913	116654113	-	1	NA	NA	NA	300	NM_030206	114886	Mm.34598	NM_030206	ENSMUSG00000020810	Cygb	3110001K20Rik|HGb|Staap	cytoglobin	protein-coding	0.140000	0.756219	
mm_156330.1	chrX	138975416	138975616	+	1	NA	NA	NA	61086	NM_013724	27206	Mm.482319	NM_013724	ENSMUSG00000052854	Nrk	AA407323|AA409510|AI225895|AV168563|AW538185|Nesk	Nik related kinase	protein-coding	0.015000	0.562189	
mm_65159.1	chr7	19671598	19671798	-	1	NA	NA	NA	2222	NM_001309795	11813	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0.020000	0.552239	
mm_120685.1	chr14	70773182	70773382	+	1	NA	NA	NA	-1099	NM_010071	13449	Mm.243323	NM_010071	ENSMUSG00000022102	Dok2	DokR|Frip	docking protein 2	protein-coding	0.010000	0.492537	
mm_139095.1	chr17	46893818	46894018	+	1	NA	NA	NA	3297	NM_178385	72726	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0.025000	0.512438	
mm_165081.1	chr19	46635727	46635927	+	1	NA	NA	NA	12426	NM_001177813	226178	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.010000	0.373134	
mm_158015.1	chrX	95956804	95957004	-	1	NA	NA	NA	70	NM_152822	76130	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	0.070000	0.597015	
mm_12950.1	chr2	87769472	87769672	+	1	NA	NA	NA	-12964	NM_146646	258640	Mm.377607	NM_146646	ENSMUSG00000068816	Olfr152	MOR181-1|Olfr4-1|V1	olfactory receptor 152	protein-coding	0.045000	0.522388	-41(CTCCTTAAGAGG,-,0.00)
mm_50151.1	chr6	41544415	41544615	+	1	NA	NA	NA	22739	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.442786	
mm_64605.1	chr7	3228436	3228636	-	1	NA	NA	NA	7763	NR_029645	100049713		NR_029645	ENSMUSG00000077886	Mir295	Mirn295|mir-295|mmu-miR-295	microRNA 295	ncRNA	0.025000	0.552239	
mm_53362.1	chr6	129366453	129366653	+	1	NA	NA	NA	16309	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.005000	0.407960	
mm_103934.1	chr11	83648951	83649151	-	1	NA	NA	NA	327	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.000000	0.422886	3(CCTTTTATAGGT,+,0.00)
mm_72288.1	chr8	75213118	75213318	+	1	NA	NA	NA	-726	NM_029182	75141	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.115000	0.761194	
mm_132708.1	chr16	43474134	43474334	+	1	NA	NA	NA	-54038	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.005000	0.298507	
mm_140882.1	chr17	23829052	23829252	-	1	NA	NA	NA	-43	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.150000	0.781095	
mm_89262.1	chr10	87859454	87859654	+	1	NA	NA	NA	502	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.015000	0.398010	
mm_36827.1	chr4	105268360	105268560	-	1	NA	NA	NA	111113	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.020000	0.452736	
mm_146239.1	chr18	77194671	77194871	+	1	NA	NA	NA	8924	NM_013666	225742	Mm.365178	NM_013666	ENSMUSG00000025425	St8sia5	ST8SiaV|Siat8e	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding	0.005000	0.323383	46(GACTATTTAGGC,-,0.00),65(CCCTTTAAACAT,+,0.00)
mm_32379.1	chr4	106316115	106316315	+	1	NA	NA	NA	2	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.170000	0.815920	
mm_117079.1	chr13	59557263	59557463	-	1	NA	NA	NA	-16	NM_023328	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.155000	0.796020	
mm_60127.1	chr7	36729393	36729593	+	1	NA	NA	NA	31375	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.010000	0.437811	
mm_103252.1	chr11	70970982	70971182	-	1	NA	NA	NA	882	NM_001252415	69723	Mm.275691	NM_027186	ENSMUSG00000018449	Rpain	2400006N03Rik|Rip	RPA interacting protein	protein-coding	0.015000	0.452736	
mm_27556.1	chr3	58525623	58525823	-	1	NA	NA	NA	-98	NM_001005509	229317	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	0.120000	0.706468	
mm_87247.1	chr10	41303846	41304046	+	1	NA	NA	NA	-705	NM_133999	103199	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0.040000	0.567164	
mm_93211.1	chr10	94944711	94944911	-	1	NA	NA	NA	-233	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.165000	0.786070	
mm_37289.1	chr4	119174100	119174300	-	1	NA	NA	NA	-5	NM_001145936	195522	Mm.169620	NM_183140	ENSMUSG00000045268	Zfp691	6430544H17Rik|Znf691	zinc finger protein 691	protein-coding	0.095000	0.641791	
mm_91217.1	chr10	21846404	21846604	-	1	NA	NA	NA	-35680	NM_001161845	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.035000	0.507463	
mm_100322.1	chr11	118014493	118014693	+	1	NA	NA	NA	12323	NR_105898	102466768		NR_105898	ENSMUSG00000098958	Mir6933	Gm27856|mmu-mir-6933	microRNA 6933	ncRNA	0.030000	0.587065	
mm_137840.1	chr17	30983995	30984195	+	1	NA	NA	NA	29412	NM_177465	52020	Mm.25923	NM_177465	ENSMUSG00000054134	Umodl1	D17Ertd488e	uromodulin-like 1	protein-coding	0.030000	0.557214	
mm_140743.1	chr17	15830692	15830892	-	1	NA	NA	NA	-4206	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.080000	0.741294	
mm_29036.1	chr3	102204512	102204712	-	1	NA	NA	NA	81	NM_177545	229658	Mm.118004	NM_177545	ENSMUSG00000027860	Vangl1	Kitenin|Lpp2|Stb2|Stbm	vang-like 1 (van gogh, Drosophila)	protein-coding	0.145000	0.800995	
mm_35773.1	chr4	46403918	46404118	-	1	NA	NA	NA	165	NM_053149	93966	Mm.25793	NM_053149	ENSMUSG00000028332	Hemgn	4921524M03Rik|AI317176|EDAG|Hgn|mNDR	hemogen	protein-coding	0.015000	0.467662	-29(GCTTTTAGGCTG,+,0.00)
mm_116192.1	chr13	31439671	31439871	-	1	NA	NA	NA	-118399	NM_008239	15220	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	0.005000	0.467662	-33(GCTTTTAGGCCT,+,0.00)
mm_72950.1	chr8	92357646	92357846	+	1	NA	NA	NA	-50	NM_018826	54352	Mm.101153	NM_018826	ENSMUSG00000031737	Irx5	-	Iroquois related homeobox 5 (Drosophila)	protein-coding	0.095000	0.741294	
mm_151195.1	chr19	53533807	53534007	+	1	NA	NA	NA	4589	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.025000	0.542289	
mm_152947.1	chr19	28975561	28975761	-	1	NA	NA	NA	-11507	NM_198651	381218	Mm.280653	NM_198651	ENSMUSG00000064202	4430402I18Rik	AW122618|Spata6l	RIKEN cDNA 4430402I18 gene	protein-coding	0.035000	0.517413	
mm_56500.1	chr6	99300206	99300406	-	1	NA	NA	NA	-33791	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.010000	0.447761	
mm_135469.1	chr16	45844879	45845079	-	1	NA	NA	NA	-601	NM_001252442	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology like domain, family B, member 2	protein-coding	0.030000	0.472637	
mm_96870.1	chr11	70198775	70198975	+	1	NA	NA	NA	-15035	NM_153081	216867	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0.020000	0.432836	21(CCTTTTCAAGGC,+,0.00)
mm_101431.1	chr11	30078814	30079014	-	1	NA	NA	NA	-52881	NM_146016	237711	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0.010000	0.477612	-34(GACCATAAAAAG,-,0.00),-32(CCATAAAAAGGG,+,0.00)
mm_50864.1	chr6	55336733	55336933	+	1	NA	NA	NA	534	NM_007472	11826	Mm.18625	NM_007472	ENSMUSG00000004655	Aqp1	CHIP28	aquaporin 1	protein-coding	0.045000	0.582090	
mm_48141.1	chr5	137150312	137150512	-	1	NA	NA	NA	-34205	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.477612	
mm_73213.1	chr8	95806905	95807105	+	1	NA	NA	NA	175	NR_015574	319960	Mm.386996	NR_015574	ENSMUSG00000074136	4930513N10Rik	-	RIKEN cDNA 4930513N10 gene	ncRNA	0.120000	0.731343	
mm_128353.1	chr15	39943896	39944096	-	1	NA	NA	NA	-2	NM_001347036	239393	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0.155000	0.766169	
mm_106912.1	chr12	8208068	8208268	+	1	NA	NA	NA	41	NM_001167767	68832	Mm.25608	NM_172401	ENSMUSG00000037669	Ldah	1110057K04Rik|mLDAH	lipid droplet associated hydrolase	protein-coding	0.100000	0.646766	
mm_30520.1	chr3	158561446	158561646	-	1	NA	NA	NA	675	NM_001291453	242274	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding	0.095000	0.696517	
mm_80468.1	chr9	78113266	78113466	+	1	NA	NA	NA	128	NM_019987	56542	Mm.288719	NM_019987	ENSMUSG00000009828	Ick	2210420N10Rik|AI848300|Mrk	intestinal cell kinase	protein-coding	0.115000	0.701493	
mm_79405.1	chr9	55149280	55149480	+	1	NA	NA	NA	11	NM_001346657	109161	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0.160000	0.776119	-35(GCCCTTTTAAGC,-,0.00),-33(CCTTTTAAGCCG,+,0.00)
mm_71067.1	chr8	34145147	34145347	+	1	NA	NA	NA	1492	NM_026609	68192	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	0.015000	0.422886	
mm_87427.1	chr10	50797897	50798097	+	1	NA	NA	NA	-97654	NM_011376	20464	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded homolog 1 (Drosophila)	protein-coding	0.000000	0.402985	
mm_125850.1	chr15	74959110	74959310	+	1	NA	NA	NA	4104	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.010000	0.567164	
mm_41171.1	chr5	88002392	88002592	+	1	NA	NA	NA	-33	NM_011422	20599	Mm.261199	NM_011422	ENSMUSG00000029280	Smr3a	AA589601|MSG1|MSG3|Smr1|Smr3	submaxillary gland androgen regulated protein 3A	protein-coding	0.015000	0.417910	-58(GTCCATAAAGGA,-,0.00)
mm_113402.1	chr13	33935951	33936151	+	1	NA	NA	NA	19	NR_040707	68808	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0.045000	0.592040	-52(GGCCTTAAATAC,-,0.00)
mm_150155.1	chr19	32172624	32172824	+	1	NA	NA	NA	38289	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.010000	0.442786	75(CCTTTAAAAATG,+,0.00)
mm_114386.1	chr13	63251285	63251485	+	1	NA	NA	NA	11356	NR_110521	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.035000	0.502488	
mm_157837.1	chrX	74281622	74281822	-	1	NA	NA	NA	14	NM_027109	69537	Mm.20169	NM_027109	ENSMUSG00000019088	Dnase1l1	2310005K03Rik|AI324885|Dnase1ll|Dnasex|Dnl1ll|G4.8	deoxyribonuclease 1-like 1	protein-coding	0.030000	0.616915	
mm_93695.1	chr10	117845844	117846044	-	1	NA	NA	NA	30	NM_024457	215449	Mm.233009	NM_024457	ENSMUSG00000052681	Rap1b	2810443E11Rik	RAS related protein 1b	protein-coding	0.190000	0.761194	
mm_5883.1	chr1	53978421	53978621	-	1	NA	NA	NA	129097	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.005000	0.497512	
mm_161699.1	chr17	23867950	23868150	+	1	NA	NA	NA	-22	NM_020487	57256	Mm.386785	NM_020487	ENSMUSG00000024116	Prss21	1700023E12Rik|TESP5|mT4|testisin	protease, serine 21	protein-coding	0.055000	0.631841	
mm_108820.1	chr12	95695382	95695582	+	1	NA	NA	NA	3256	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.145000	0.721393	
mm_108861.1	chr12	98920442	98920642	+	1	NA	NA	NA	-32	NM_029553	76260	Mm.282660	NM_029553	ENSMUSG00000021013	Ttc8	0610012F22Rik|AV001447|BBS8	tetratricopeptide repeat domain 8	protein-coding	0.080000	0.656716	
mm_59401.1	chr7	26784791	26784991	+	1	NA	NA	NA	-24036	NM_013809	13108	Mm.102312	NM_013809	ENSMUSG00000049685	Cyp2g1	-	cytochrome P450, family 2, subfamily g, polypeptide 1	protein-coding	0.005000	0.432836	
mm_115312.1	chr13	112335836	112336036	+	1	NA	NA	NA	47418	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.015000	0.497512	
mm_55249.1	chr6	52714240	52714440	-	1	NA	NA	NA	611	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.040000	0.562189	
mm_165732.1	chr3	106464930	106465130	+	1	NA	NA	NA	-17401	NM_001093754	72121	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.000000	0.432836	
mm_137404.1	chr17	25961653	25961853	+	1	NA	NA	NA	3752	NM_015830	50817	Mm.216072	NM_015830	ENSMUSG00000037326	Capn15	Solh	calpain 15	protein-coding	0.015000	0.567164	-92(GCTTATCTAGAC,+,0.00)
mm_94253.1	chr11	3330825	3331025	+	1	NA	NA	NA	194	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.025000	0.562189	
mm_167208.1	chr7	144939673	144939873	-	1	NA	NA	NA	152	NM_007631	12443	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.090000	0.661692	
mm_165529.1	chr2	178416520	178416720	-	1	NA	NA	NA	2086	NM_001081289	71532	Mm.40216	NM_001081289	ENSMUSG00000070476	Fam217b	9030418K01Rik|AI851938	family with sequence similarity 217, member B	protein-coding	0.045000	0.527363	
mm_104745.1	chr11	98457909	98458109	-	1	NA	NA	NA	11175	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.095000	0.731343	
mm_100326.1	chr11	118153124	118153324	+	1	NA	NA	NA	-24005	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.010000	0.532338	
mm_57357.1	chr6	124760415	124760615	-	1	NA	NA	NA	-4028	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.035000	0.587065	
mm_160175.1	chr7	45437962	45438162	-	1	NA	NA	NA	3223	NM_030678	14936	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0.035000	0.616915	
mm_46037.1	chr5	91962220	91962420	-	1	NA	NA	NA	236	NR_073442	68098	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0.020000	0.402985	
mm_122554.1	chr14	49066220	49066420	-	1	NA	NA	NA	-175	NM_144535	74385	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	0.125000	0.746269	
mm_3804.1	chr1	158361996	158362196	+	1	NA	NA	NA	-208	NM_007495	11899	Mm.329586	NM_007495	ENSMUSG00000026587	Astn1	Astn|GC14|mKIAA0289	astrotactin 1	protein-coding	0.010000	0.437811	-19(AGCCCTTTAAGG,-,0.00),-17(CCCTTTAAGGTG,+,0.00)
mm_147608.1	chr18	56925416	56925616	-	1	NA	NA	NA	32	NM_177115	320253	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0.110000	0.721393	
mm_38430.1	chr4	139310584	139310784	-	1	NA	NA	NA	16	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.095000	0.701493	
mm_67440.1	chr7	80387317	80387517	-	1	NA	NA	NA	529	NM_010194	14159	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.030000	0.542289	
mm_20800.1	chr2	144269967	144270167	-	1	NA	NA	NA	505	NM_024225	69178	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	0.040000	0.398010	
mm_169485.1	chr14	73797133	73797333	-	1	NA	NA	NA	244447	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	0.070000	0.577114	
mm_113618.1	chr13	41605742	41605942	+	1	NA	NA	NA	-374	NM_001163572	621976	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.195000	0.835821	
mm_21109.1	chr2	153411325	153411525	-	1	NA	NA	NA	33054	NM_001001986	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.000000	0.467662	47(AGCTCTAAAAGG,-,0.00),48(GCTCTAAAAGGG,+,0.00),68(CCCCTGAAAAGG,-,0.00)
mm_34405.1	chr4	145234143	145234343	+	1	NA	NA	NA	12627	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.005000	0.487562	
mm_125488.1	chr15	54745776	54745976	+	1	NA	NA	NA	-52	NM_010930	18133	Mm.5167	NM_010930	ENSMUSG00000037362	Nov	C130088N23Rik|CCN3	nephroblastoma overexpressed gene	protein-coding	0.045000	0.631841	
mm_129200.1	chr15	76511762	76511962	-	1	NA	NA	NA	-44	NM_010046	13350	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	0.150000	0.766169	
mm_124197.1	chr14	98169190	98169390	-	1	NA	NA	NA	475	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.050000	0.621891	-33(CCTTATATGTGA,+,0.00)
mm_62997.1	chr7	120739796	120739996	+	1	NA	NA	NA	339	NM_177697	233813	Mm.389939	NM_177697	ENSMUSG00000030889	Vwa3a	E030013G06Rik	von Willebrand factor A domain containing 3A	protein-coding	0.005000	0.507463	
mm_162068.1	chrX	13554831	13555031	-	1	NA	NA	NA	-77838	NM_011823	23890	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	0.015000	0.477612	
mm_25351.1	chr3	106788770	106788970	+	1	NA	NA	NA	1279	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.005000	0.368159	
mm_13167.1	chr2	92609451	92609651	+	1	NA	NA	NA	9844	NM_023850	76969	Mm.38021	NM_023850	ENSMUSG00000027221	Chst1	2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KSGAL6ST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding	0.000000	0.557214	-92(ACCTTTATAGAC,+,0.00),-90(CTTTATAGACAG,+,0.00)
mm_161310.1	chr14	40892894	40893094	-	1	NA	NA	NA	-29	NM_177816	328381	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.035000	0.592040	
mm_45981.1	chr5	90475218	90475418	-	1	NA	NA	NA	14448	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.368159	
mm_84742.1	chr9	75387793	75387993	-	1	NA	NA	NA	21466	NM_027418	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.015000	0.338308	
mm_128476.1	chr15	50889206	50889406	-	1	NA	NA	NA	-192	NR_035444	100316685		NR_035444	ENSMUSG00000084458	Mir1907	Mirn1907|mmu-mir-1907	microRNA 1907	ncRNA	0.030000	0.532338	
mm_163935.1	chr14	50381189	50381389	-	1	NA	NA	NA	-11469	NM_146666	258660	Mm.377623	NM_146666	ENSMUSG00000047716	Olfr736	MOR106-5	olfactory receptor 736	protein-coding	0.045000	0.512438	
mm_159354.1	chr3	80741012	80741212	-	1	NA	NA	NA	61679	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.025000	0.447761	
mm_164102.1	chr15	22548845	22549045	+	1	NA	NA	NA	166039	NM_001165971	545091	Mm.475598	NM_001165971		Gm5803	EG545091	predicted gene 5803	protein-coding	0.000000	0.472637	
mm_119052.1	chr14	30654253	30654453	+	1	NA	NA	NA	-22	NM_177815	328370	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	0.075000	0.636816	
mm_12701.1	chr2	76537269	76537469	+	1	NA	NA	NA	38363	NM_001290735	99031	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding	0.010000	0.522388	
mm_26113.1	chr3	137624107	137624307	+	1	NA	NA	NA	535	NM_030143	73284	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	0.040000	0.547264	
mm_116101.1	chr13	28884587	28884787	-	1	NA	NA	NA	735	NR_045054	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.030000	0.487562	
mm_19152.1	chr2	80581122	80581322	-	1	NA	NA	NA	-40	NM_016965	50884	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0.170000	0.796020	
mm_79201.1	chr9	48670373	48670573	+	1	NA	NA	NA	-65350	NM_010924	18113	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0.035000	0.517413	
mm_172388.1	chr7	135651790	135651990	+	1	NA	NA	NA	-9	NM_001316681	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.015000	0.626866	
mm_60070.1	chr7	31375492	31375692	+	1	NA	NA	NA	0	NM_001256073	384585	Mm.305164	NM_001256073	ENSMUSG00000095257	Scgb1b3	Abpa21|Abpa3|EG384585|Gm5325	secretoglobin, family 1B, member 3	protein-coding	0.010000	0.587065	
mm_92823.1	chr10	81461628	81461828	-	1	NA	NA	NA	11403	NM_001311127	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.005000	0.522388	
mm_57681.1	chr6	128503459	128503659	-	1	NA	NA	NA	23161	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.015000	0.532338	
mm_148101.1	chr18	73971367	73971567	-	1	NA	NA	NA	-46440	NR_045390	77855	Mm.410760	NR_045390	ENSMUSG00000090263	D730045A05Rik	-	RIKEN cDNA D730045A05 gene	ncRNA	0.020000	0.557214	-52(TGACATAAAAGC,-,0.00)
mm_62979.1	chr7	120173770	120173970	+	1	NA	NA	NA	12	NM_028085	72074	Mm.23165	NM_028085	ENSMUSG00000030909	Anks4b	2010013E14Rik|AI956809|Harp	ankyrin repeat and sterile alpha motif domain containing 4B	protein-coding	0.020000	0.542289	
mm_119995.1	chr14	55604102	55604302	+	1	NA	NA	NA	217	NM_001159417	16391	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0.035000	0.562189	
mm_145358.1	chr18	56676523	56676723	+	1	NA	NA	NA	-31190	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.025000	0.572139	
mm_85100.1	chr9	94537929	94538129	-	1	NA	NA	NA	52	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0.155000	0.771144	
mm_65765.1	chr7	28741641	28741841	-	1	NA	NA	NA	40	NM_011885	24030	Mm.358650	NM_011885	ENSMUSG00000045948	Mrps12	AI327385|Rpms12|rps12	mitochondrial ribosomal protein S12	protein-coding	0.035000	0.592040	
mm_170442.1	chr18	80186223	80186423	+	1	NA	NA	NA	84	NR_131039	105246506	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	0.015000	0.527363	
mm_52.1	chr1	6527911	6528111	+	1	NA	NA	NA	40780	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.015000	0.427861	
mm_90947.1	chr10	12975500	12975700	-	1	NA	NA	NA	-11341	NM_001163591	74732	Mm.248648	NM_029075	ENSMUSG00000039232	Stx11	5830405C08Rik	syntaxin 11	protein-coding	0.010000	0.442786	
mm_172883.1	chr9	49483023	49483223	+	1	NA	NA	NA	3102	NM_172770	235330	Mm.177413	NM_172770	ENSMUSG00000040219	Ttc12	E330017O07Rik	tetratricopeptide repeat domain 12	protein-coding	0.010000	0.552239	
mm_66153.1	chr7	31148842	31149042	-	1	NA	NA	NA	2108	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.035000	0.621891	
mm_120643.1	chr14	70522123	70522323	+	1	NA	NA	NA	1858	NM_011359	20389	Mm.24040	NM_011359	ENSMUSG00000022097	Sftpc	Bricd6|SP-C|SP5|SPC|Sftp-2|Sftp2|pro-SpC	surfactant associated protein C	protein-coding	0.055000	0.567164	
mm_126657.1	chr15	84231936	84232136	+	1	NA	NA	NA	-7	NM_133167	170736	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.105000	0.726368	
mm_114087.1	chr13	54590144	54590344	+	1	NA	NA	NA	13	NM_025933	67044	Mm.29353	NM_025933	ENSMUSG00000025868	Higd2a	2010110M21Rik|AA690237	HIG1 domain family, member 2A	protein-coding	0.065000	0.606965	
mm_18269.1	chr2	52335091	52335291	-	1	NA	NA	NA	3607	NM_010889	17996	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	0.015000	0.457711	
mm_104451.1	chr11	95040495	95040695	-	1	NA	NA	NA	776	NM_133667	18604	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	0.005000	0.587065	
mm_128078.1	chr15	27664274	27664474	-	1	NA	NA	NA	17168	NM_001242424	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.020000	0.492537	
mm_45049.1	chr5	41708053	41708253	-	1	NA	NA	NA	26	NR_132325	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.085000	0.706468	
mm_75910.1	chr8	71381974	71382174	-	1	NA	NA	NA	-122	NM_010150	13864	Mm.28989	NM_010150	ENSMUSG00000002393	Nr2f6	AV090102|COUP-TF3|EAR2|Erbal2	nuclear receptor subfamily 2, group F, member 6	protein-coding	0.175000	0.810945	43(GCCCTTATAAGG,-,0.00),45(CCTTATAAGGGC,+,0.00)
mm_116468.1	chr13	43480962	43481162	-	1	NA	NA	NA	-89	NM_019930	56705	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.180000	0.810945	
mm_111936.1	chr12	108893290	108893490	-	1	NA	NA	NA	-179	NM_011710	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.010000	0.467662	
mm_54698.1	chr6	39557713	39557913	-	1	NA	NA	NA	21	NM_172477	209773	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.160000	0.791045	
mm_71303.1	chr8	41299032	41299232	+	1	NA	NA	NA	59373	NM_023662	18536	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	0.000000	0.402985	
mm_102276.1	chr11	55395413	55395613	-	1	NA	NA	NA	24567	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.015000	0.432836	
mm_153250.1	chr19	36349309	36349509	-	1	NA	NA	NA	-29658	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.130000	0.621891	
mm_29867.1	chr3	130709305	130709505	-	1	NA	NA	NA	39	NM_025509	66357	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0.065000	0.601990	
mm_82305.1	chr9	7868031	7868231	-	1	NA	NA	NA	5039	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.015000	0.527363	-55(GTGTTTTAAAGG,-,0.00),-53(GTTTTAAAGGCC,+,0.00)
mm_161764.1	chr17	36111346	36111546	-	1	NA	NA	NA	230	NM_001271005	667803	Mm.477808	NM_001271005		H2-T-ps	C920025E04Rik|H2-T11	histocompatibility 2, T region locus, pseudogene	protein-coding	0.095000	0.666667	
mm_91533.1	chr10	39122137	39122337	-	1	NA	NA	NA	11658	NM_183254	66337	Mm.45187	NM_183254	ENSMUSG00000051736	Fam229b	1700025K23Rik	family with sequence similarity 229, member B	protein-coding	0.010000	0.422886	
mm_103990.1	chr11	84840216	84840416	-	1	NA	NA	NA	11138	NR_046281	74995	Mm.84413	NR_046281	ENSMUSG00000086799	4930502E09Rik	-	RIKEN cDNA 4930502E09 gene	ncRNA	0.040000	0.442786	
mm_100189.1	chr11	116725335	116725535	+	1	NA	NA	NA	-26732	NR_003364	193217	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	0.040000	0.587065	-30(GCTTATAGAGCT,+,0.00)
mm_42377.1	chr5	114929738	114929938	+	1	NA	NA	NA	6598	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.030000	0.512438	
mm_85760.1	chr9	108649566	108649766	-	1	NA	NA	NA	-286	NM_011790	23807	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.055000	0.472637	
mm_133785.1	chr16	95257531	95257731	+	1	NA	NA	NA	73	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.025000	0.427861	-40(ACCTTTAAAAAA,-,0.00),-39(CCTTTAAAAAAC,+,0.00),41(TCTTTTATACAC,+,0.00)
mm_140347.1	chr17	86830966	86831166	+	1	NA	NA	NA	77202	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.040000	0.636816	
mm_154223.1	chr19	59879134	59879334	-	1	NA	NA	NA	64130	NM_001033172	74998	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	0.015000	0.512438	
mm_21834.1	chr2	165493214	165493414	-	1	NA	NA	NA	0	NM_001007581	381406	Mm.330785	NM_001007581	ENSMUSG00000039725	Trp53rka	2810408M09Rik	transformation related protein 53 regulating kinase A	protein-coding	0.115000	0.676617	
mm_53422.1	chr6	134035678	134035878	+	1	NA	NA	NA	78	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.120000	0.676617	
mm_31781.1	chr4	63560607	63560807	+	1	NA	NA	NA	347	NM_144905	230279	Mm.41523	NM_144905	ENSMUSG00000045917	Tmem268	6330416G13Rik|AW492431|bM230C2.2	transmembrane protein 268	protein-coding	0.020000	0.512438	65(CTTTTTATAGGG,+,0.00)
mm_112521.1	chr13	9171230	9171430	+	1	NA	NA	NA	77449	NM_172585	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.010000	0.462687	
mm_100169.1	chr11	116531791	116531991	+	1	NA	NA	NA	-20	NM_001172475	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.060000	0.606965	
mm_122264.1	chr14	34310294	34310494	-	1	NA	NA	NA	109	NM_029389	75698	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	0.130000	0.736318	
mm_2117.1	chr1	87878092	87878292	+	1	NA	NA	NA	-23893	NR_136921	100503175	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.005000	0.402985	-79(TTCTATAAATAG,-,0.00)
mm_43138.1	chr5	125391762	125391962	+	1	NA	NA	NA	-1845	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.015000	0.522388	
mm_105980.1	chr11	115603794	115603994	-	1	NA	NA	NA	22	NM_001252067	260302	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	0.120000	0.751244	
mm_79842.1	chr9	64811332	64811532	+	1	NA	NA	NA	421	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.130000	0.736318	
mm_38898.1	chr4	149856187	149856387	-	1	NA	NA	NA	-82020	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.020000	0.432836	
mm_52939.1	chr6	122934050	122934250	+	1	NA	NA	NA	12302	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.005000	0.497512	
mm_107694.1	chr12	55384661	55384861	+	1	NA	NA	NA	539	NM_001310583	26443	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.000000	0.572139	
mm_109810.1	chr12	3356946	3357146	-	1	NA	NA	NA	-8086	NM_008445	16570	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.040000	0.557214	
mm_156572.1	chrX	151919545	151919745	+	1	NA	NA	NA	6431	NR_029753	723947		NR_029753	ENSMUSG00000065536	Mir98	Mirn98|mir-98|mmu-mir-98	microRNA 98	ncRNA	0.020000	0.502488	
mm_103544.1	chr11	77530176	77530376	-	1	NA	NA	NA	15159	NM_026185	67477	Mm.432526	NM_026185	ENSMUSG00000000686	Abhd15	1300007F04Rik	abhydrolase domain containing 15	protein-coding	0.005000	0.283582	
mm_68350.1	chr7	106509315	106509515	-	1	NA	NA	NA	-68342	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.010000	0.393035	
mm_106310.1	chr11	118302068	118302268	-	1	NA	NA	NA	-11924	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.005000	0.522388	49(GTCCTTTTAAGA,-,0.00),51(CCTTTTAAGACA,+,0.00)
mm_145639.1	chr18	61117188	61117388	+	1	NA	NA	NA	-180	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.010000	0.572139	
mm_15371.1	chr2	156432873	156433073	+	1	NA	NA	NA	12064	NM_001291123	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.010000	0.606965	
mm_40226.1	chr5	37280461	37280661	+	1	NA	NA	NA	34797	NM_007765	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.015000	0.616915	
mm_152379.1	chr19	10237879	10238079	-	1	NA	NA	NA	2769	NM_001033481	225908	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.020000	0.582090	
mm_23627.1	chr3	65974908	65975108	+	1	NA	NA	NA	-16783	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.045000	0.547264	
mm_37857.1	chr4	132261509	132261709	-	1	NA	NA	NA	-60	NM_001122992	56809	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	0.160000	0.766169	-41(TCCCCTTTAAGG,-,0.00),-40(CCCCTTTAAGGC,-,0.00),-39(CCCTTTAAGGCG,+,0.00),-38(CCTTTAAGGCGC,+,0.00)
mm_46802.1	chr5	113075784	113075984	-	1	NA	NA	NA	5700	NM_001159650	12962	Mm.378899	NM_021352	ENSMUSG00000029352	Crybb3	AI852419	crystallin, beta B3	protein-coding	0.055000	0.626866	
mm_135094.1	chr16	34958726	34958926	-	1	NA	NA	NA	38	NR_045722	278725	Mm.436927	NR_045722		E130310I04Rik	A930019C19Rik	RIKEN cDNA E130310I04 gene	ncRNA	0.020000	0.597015	49(AACCATAAAAGG,-,0.00)
mm_57707.1	chr6	128581505	128581705	-	1	NA	NA	NA	1	NM_001001179	232400	Mm.259234	NM_001001179	ENSMUSG00000047228	BC048546	Ovos	cDNA sequence BC048546	protein-coding	0.010000	0.457711	-34(GACTATAAAAGC,-,0.00)
mm_131564.1	chr16	18143420	18143620	+	1	NA	NA	NA	15814	NM_022982	65079	Mm.40149	NM_022982	ENSMUSG00000043811	Rtn4r	NOGOR|NgR|NgR1	reticulon 4 receptor	protein-coding	0.010000	0.507463	
mm_89819.1	chr10	105040178	105040378	+	1	NA	NA	NA	534201	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.000000	0.358209	-26(TCTTTAAAGGTG,+,0.00)
mm_114483.1	chr13	69611976	69612176	+	1	NA	NA	NA	60	NM_145354	28114	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	0.130000	0.726368	
mm_102050.1	chr11	52000687	52000887	-	1	NA	NA	NA	-321	NM_009458	22210	Mm.384918	NM_009458	ENSMUSG00000020390	Ube2b	2610301N02Rik|E2-14k|HR6B|Rad6b|mHR6B	ubiquitin-conjugating enzyme E2B	protein-coding	0.075000	0.631841	
mm_78149.1	chr9	21015296	21015496	+	1	NA	NA	NA	-544	NM_010493	15894	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0.045000	0.616915	
mm_44867.1	chr5	34495213	34495413	-	1	NA	NA	NA	18666	NM_139064	231130	Mm.28615	NM_139064	ENSMUSG00000059866	Tnip2	1810020H16Rik|ABIN-2|AI428870	TNFAIP3 interacting protein 2	protein-coding	0.000000	0.412935	
mm_35333.1	chr4	27867504	27867704	-	1	NA	NA	NA	-945527	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.025000	0.497512	
mm_156311.1	chrX	136838067	136838267	+	1	NA	NA	NA	15421	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.313433	
mm_82991.1	chr9	36533924	36534124	-	1	NA	NA	NA	7939	NM_001033783	434396	Mm.118836	NM_001033783	ENSMUSG00000074448	Gm5615	EG434396|Pate-H|Pate9	predicted gene 5615	protein-coding	0.005000	0.437811	
mm_154050.1	chr19	55099355	55099555	-	1	NA	NA	NA	-8	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.165000	0.771144	
mm_141633.1	chr17	32947292	32947492	-	1	NA	NA	NA	-31	NM_130882	170716	Mm.254838	NM_130882	ENSMUSG00000024055	Cyp4f13	0610030I10Rik|Cypf13	cytochrome P450, family 4, subfamily f, polypeptide 13	protein-coding	0.025000	0.567164	
mm_118341.1	chr13	114458628	114458828	-	1	NA	NA	NA	223	NM_001301373	14313	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	0.170000	0.746269	
mm_171259.1	chr3	83880250	83880450	+	1	NA	NA	NA	-38742	NM_011905	24088	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.005000	0.522388	
mm_156088.1	chrX	110814368	110814568	+	1	NA	NA	NA	89	NM_008901	18994	Mm.56946	NM_008901	ENSMUSG00000056854	Pou3f4	Brn-4|Brn4|OTF-9|Otf9|Slf|oct-9	POU domain, class 3, transcription factor 4	protein-coding	0.050000	0.567164	
mm_51652.1	chr6	86028778	86028978	+	1	NA	NA	NA	197	NM_001271860	11519	Mm.104155	NM_013458	ENSMUSG00000030000	Add2	2900072M03Rik|add97	adducin 2 (beta)	protein-coding	0.085000	0.651741	
mm_112619.1	chr13	15534366	15534566	+	1	NA	NA	NA	70743	NM_008130	14634	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0.005000	0.353234	
mm_37744.1	chr4	129600524	129600724	-	1	NA	NA	NA	24	NM_018799	54709	Mm.250874	NM_018799	ENSMUSG00000028798	Eif3i	36kDa|D4Ertd632e|Eif3s2|Trip1	eukaryotic translation initiation factor 3, subunit I	protein-coding	0.100000	0.666667	
mm_9840.1	chr1	184453283	184453483	-	1	NA	NA	NA	104308	NR_040472	73590	Mm.82792	NR_040472	ENSMUSG00000101574	1700112H15Rik	-	RIKEN cDNA 1700112H15 gene	ncRNA	0.020000	0.482587	
mm_107419.1	chr12	34984763	34984963	+	1	NA	NA	NA	102	NM_029294	75456	Mm.79179	NM_029294	ENSMUSG00000092305	Prps1l1	1700011K15Rik	phosphoribosyl pyrophosphate synthetase 1-like 1	protein-coding	0.040000	0.527363	
mm_140614.1	chr17	10840179	10840379	-	1	NA	NA	NA	-80	NM_001317726	50873	Mm.311110	NM_016694	ENSMUSG00000023826	Park2	PRKN	Parkinson disease (autosomal recessive, juvenile) 2, parkin	protein-coding	0.105000	0.631841	
mm_24390.1	chr3	90264878	90265078	+	1	NA	NA	NA	-1536	NM_201407	229541	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0.035000	0.597015	
mm_130208.1	chr15	95528454	95528654	-	1	NA	NA	NA	-302	NM_001289653	54003	Mm.3959	NM_016743	ENSMUSG00000022454	Nell2	A330108N19Rik|R75516|mel91	NEL-like 2	protein-coding	0.095000	0.671642	
mm_169392.1	chr14	43556344	43556544	+	1	NA	NA	NA	51569	NM_001098269	100042342	Mm.429750	NM_001098269	ENSMUSG00000095528	Gm10375	ENSMUSG00000072602	predicted gene 10375	protein-coding	0.000000	0.457711	
mm_20770.1	chr2	142901354	142901554	-	1	NA	NA	NA	10	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.095000	0.741294	
mm_143282.1	chr17	65772591	65772791	-	1	NA	NA	NA	61	NM_133685	106572	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.130000	0.741294	
mm_70648.1	chr8	14303318	14303518	+	1	NA	NA	NA	207543	NM_172910	244310	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	discs, large (Drosophila) homolog-associated protein 2	protein-coding	0.000000	0.333333	
mm_123470.1	chr14	65973367	65973567	-	1	NA	NA	NA	4984	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.020000	0.547264	
mm_21625.1	chr2	164277070	164277270	-	1	NA	NA	NA	1137	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.020000	0.417910	
mm_115998.1	chr13	24414871	24415071	-	1	NA	NA	NA	-151	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.010000	0.517413	
mm_68177.1	chr7	103851697	103851897	-	1	NA	NA	NA	1410	NM_008221	15135	Mm.440164	NM_008221	ENSMUSG00000052187	Hbb-y	Ey|Hby	hemoglobin Y, beta-like embryonic chain	protein-coding	0.010000	0.422886	
mm_56692.1	chr6	114397666	114397866	-	1	NA	NA	NA	-170	NM_008285	15465	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.065000	0.651741	
mm_18250.1	chr2	52206859	52207059	-	1	NA	NA	NA	-84043	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.010000	0.442786	
mm_80122.1	chr9	70576649	70576849	+	1	NA	NA	NA	33879	NM_025690	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.000000	0.472637	
mm_61439.1	chr7	75455488	75455688	+	1	NA	NA	NA	54	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.105000	0.691542	
mm_40231.1	chr5	37288758	37288958	+	1	NA	NA	NA	43094	NM_007765	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.025000	0.532338	
mm_7829.1	chr1	132116812	132117012	-	1	NA	NA	NA	22773	NM_008795	18557	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.045000	0.592040	
mm_140130.1	chr17	79615176	79615376	+	1	NA	NA	NA	376	NM_201361	381110	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.100000	0.716418	
mm_57760.1	chr6	129232871	129233071	-	1	NA	NA	NA	5074	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.030000	0.472637	
mm_41342.1	chr5	90499517	90499717	+	1	NA	NA	NA	8903	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.015000	0.407960	
mm_88314.1	chr10	75517936	75518136	+	1	NA	NA	NA	-6	NM_026095	67332	Mm.45151	NM_026095	ENSMUSG00000020180	Snrpd3	1700043E15Rik|2310009E13Rik|AW046420|SMD3	small nuclear ribonucleoprotein D3	protein-coding	0.060000	0.552239	
mm_65127.1	chr7	19458690	19458890	-	1	NA	NA	NA	-296	NM_172279	232944	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.115000	0.800995	
mm_91737.1	chr10	46819805	46820005	-	1	NA	NA	NA	575156	NR_028276	108637		NR_028276	ENSMUSG00000096263	Snord14c	Gm23107|Rnu14|U14	small nucleolar RNA, C/D box 14C	snoRNA	0.020000	0.467662	
mm_70069.1	chr7	142652925	142653125	-	1	NA	NA	NA	1971	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.000000	0.427861	-16(TACCCTAAAAAG,-,0.00),-14(CCCTAAAAAGCA,+,0.00)
mm_113991.1	chr13	52582971	52583171	+	1	NA	NA	NA	-366	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.095000	0.711443	
mm_36555.1	chr4	86857231	86857431	-	1	NA	NA	NA	36	NM_009096	20104	Mm.379007	NM_009096	ENSMUSG00000028495	Rps6	S6R	ribosomal protein S6	protein-coding	0.115000	0.661692	
mm_6264.1	chr1	69541230	69541430	-	1	NA	NA	NA	144630	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.000000	0.427861	
mm_73445.1	chr8	106210930	106211130	+	1	NA	NA	NA	-24	NM_145404	214572	Mm.251804	NM_145404	ENSMUSG00000060098	Prmt7	4933402B05Rik|BC006705	protein arginine N-methyltransferase 7	protein-coding	0.100000	0.696517	
mm_60768.1	chr7	45554832	45555032	+	1	NA	NA	NA	4	NM_025330	66065	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.010000	0.587065	
mm_6967.1	chr1	86154527	86154727	-	1	NA	NA	NA	-153	NM_030184	78795	Mm.379264	NM_027456	ENSMUSG00000062590	Armc9	3830422A13Rik|4831423D23Rik|4930438O05Rik|5730415N24Rik	armadillo repeat containing 9	protein-coding	0.065000	0.537313	
mm_137135.1	chr17	23601395	23601595	+	1	NA	NA	NA	669	NM_001289482	332221	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	0.005000	0.487562	
mm_126863.1	chr15	89334875	89335075	+	1	NA	NA	NA	502	NM_019977	56727	Mm.158200	NM_019977	ENSMUSG00000022613	Miox	0610009I10Rik|AI314022|Aldrl6|C85427|RSOR	myo-inositol oxygenase	protein-coding	0.015000	0.497512	-86(GTATTTATACCC,+,0.00)
mm_42907.1	chr5	122502374	122502574	+	1	NA	NA	NA	-249	NR_027838	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.165000	0.776119	
mm_158942.1	chr1	79671852	79672052	-	1	NA	NA	NA	20	NM_183027	252903	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0.050000	0.641791	
mm_115416.1	chr13	115089404	115089604	+	1	NA	NA	NA	654	NM_134058	105083	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota homolog (Drosophila)	protein-coding	0.055000	0.621891	
mm_34924.1	chr4	155812371	155812571	+	1	NA	NA	NA	-18	NM_207678	56036	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	0.145000	0.721393	
mm_54350.1	chr6	30915471	30915671	-	1	NA	NA	NA	2	NM_054073	116732	Mm.207048	NM_054073	ENSMUSG00000039032	Tsga13	1700023D02Rik|Vme1	testis specific gene A13	protein-coding	0.005000	0.393035	
mm_63404.1	chr7	127325132	127325332	+	1	NA	NA	NA	20082	NM_146202	233890	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0.020000	0.567164	
mm_126472.1	chr15	81466216	81466416	+	1	NA	NA	NA	0	NM_019712	56438	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.095000	0.676617	-100(GCCTTTAAGGGG,+,0.00),-100(GCCTTTAAGGGG,-,0.00),-99(CCTTTAAGGGGC,+,0.00)
mm_85223.1	chr9	97018956	97019156	-	1	NA	NA	NA	-701	NM_145134	211949	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0.075000	0.646766	
mm_154004.1	chr19	53032031	53032231	-	1	NA	NA	NA	6523	NM_133216	170750	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	0.030000	0.577114	
mm_92590.1	chr10	80075269	80075469	-	1	NA	NA	NA	21350	NM_001037741	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.065000	0.666667	
mm_8612.1	chr1	156035993	156036193	-	1	NA	NA	NA	57	NM_001160182	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.125000	0.676617	
mm_53222.1	chr6	126939899	126940099	+	1	NA	NA	NA	33	NM_138594	28040	Mm.44228	NM_138594	ENSMUSG00000030347	D6Wsu163e	C12orf4	DNA segment, Chr 6, Wayne State University 163, expressed	protein-coding	0.025000	0.467662	
mm_159292.1	chr2	174297906	174298106	+	1	NA	NA	NA	147	NM_001310085	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.065000	0.621891	
mm_127132.1	chr15	98167745	98167945	+	1	NA	NA	NA	39	NM_177716	239650	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	0.115000	0.691542	
mm_153840.1	chr19	46327069	46327269	-	1	NA	NA	NA	-13	NM_028627	73728	Mm.268532	NM_028627	ENSMUSG00000037126	Psd	1110007H17Rik|A930015K15|Efa6|Efa6a|Psdl|mKIAA2011	pleckstrin and Sec7 domain containing	protein-coding	0.100000	0.666667	
mm_11712.1	chr2	36237409	36237609	+	1	NA	NA	NA	7083	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.015000	0.502488	
mm_74576.1	chr8	11218667	11218867	-	1	NA	NA	NA	-94038	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.015000	0.527363	
mm_164473.1	chr16	68104220	68104420	+	1	NA	NA	NA	-483412	NM_178721	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.010000	0.467662	
mm_14875.1	chr2	148799808	148800008	+	1	NA	NA	NA	1069	NM_009978	13012	Mm.20435	NM_009978	ENSMUSG00000027442	Cst8	Cres|Cst-rs1	cystatin 8 (cystatin-related epididymal spermatogenic)	protein-coding	0.015000	0.482587	
mm_96513.1	chr11	68473762	68473962	+	1	NA	NA	NA	-29157	NM_001004435	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.035000	0.587065	
mm_95263.1	chr11	44926111	44926311	+	1	NA	NA	NA	190717	NR_045100	100504255	Mm.123608	NR_045100	ENSMUSG00000084773	Gm12159	OTTMUSG00000005475	predicted gene 12159	ncRNA	0.010000	0.348259	
mm_14664.1	chr2	138278375	138278575	+	1	NA	NA	NA	-18	NM_145534	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.050000	0.562189	
mm_132168.1	chr16	32277447	32277647	+	1	NA	NA	NA	86	NM_027355	70238	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	0.110000	0.691542	
mm_128457.1	chr15	50781935	50782135	-	1	NA	NA	NA	107014	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.015000	0.432836	
mm_88375.1	chr10	76253807	76254007	+	1	NA	NA	NA	71	NM_009115	20203	Mm.235998	NM_009115	ENSMUSG00000033208	S100b	AI850290|Bpb	S100 protein, beta polypeptide, neural	protein-coding	0.010000	0.537313	
mm_15576.1	chr2	158667025	158667225	+	1	NA	NA	NA	-10	NM_001159662	228852	Mm.150540	NM_153089	ENSMUSG00000037754	Ppp1r16b	ANKRD4|C130078N17Rik|TIMAP|Wdt4	protein phosphatase 1, regulatory (inhibitor) subunit 16B	protein-coding	0.085000	0.686567	
mm_83096.1	chr9	40321162	40321362	-	1	NA	NA	NA	-12210	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.020000	0.502488	
mm_98372.1	chr11	94044049	94044249	+	1	NA	NA	NA	-56	NM_001025430	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.035000	0.512438	
mm_136602.1	chr17	5160848	5161048	+	1	NA	NA	NA	165874	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.015000	0.358209	
mm_33124.1	chr4	124802715	124802915	+	1	NA	NA	NA	266	NM_008636	17764	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	0.035000	0.626866	
mm_172132.1	chr6	3399330	3399530	-	1	NA	NA	NA	141	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.005000	0.432836	
mm_69212.1	chr7	127512137	127512337	-	1	NA	NA	NA	254	NM_001304266	100043597	Mm.428042	NM_175144	ENSMUSG00000053877	Srcap	B930091H02Rik|D030022P06Rik|F630004O05Rik	Snf2-related CREBBP activator protein	protein-coding	0.085000	0.656716	
mm_162868.1	chr10	93589598	93589798	-	1	NA	NA	NA	-40	NM_027246	69878	Mm.259642	NM_027246	ENSMUSG00000020018	Snrpf	2010013O18Rik|SMF|sm-F|snRNP-F	small nuclear ribonucleoprotein polypeptide F	protein-coding	0.080000	0.572139	
mm_72132.1	chr8	71881941	71882141	+	1	NA	NA	NA	-27	NM_145624	236193	Mm.290790	NM_145624	ENSMUSG00000056019	Zfp709	BC021921|GIOT-4|HIT-40	zinc finger protein 709	protein-coding	0.085000	0.621891	
mm_126585.1	chr15	82298853	82299053	+	1	NA	NA	NA	-31	NM_029066	74716	Mm.159315	NM_029066	ENSMUSG00000022455	Wbp2nl	4930521I23Rik|PAWP	WBP2 N-terminal like	protein-coding	0.065000	0.641791	
mm_34395.1	chr4	145022940	145023140	+	1	NA	NA	NA	129903	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.025000	0.537313	
mm_116531.1	chr13	45841545	45841745	-	1	NA	NA	NA	123346	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.000000	0.422886	
mm_125558.1	chr15	58888921	58889121	+	1	NA	NA	NA	-208	NM_175226	75841	Mm.4537	NM_175226	ENSMUSG00000037075	Rnf139	4930555P18Rik	ring finger protein 139	protein-coding	0.145000	0.766169	
mm_107905.1	chr12	70939848	70940048	+	1	NA	NA	NA	2091	NM_019785	56444	Mm.29317	NM_019785	ENSMUSG00000021076	Actr10	Actr11|Arp11	ARP10 actin-related protein 10	protein-coding	0.015000	0.383085	
mm_23302.1	chr3	52516874	52517074	+	1	NA	NA	NA	-222750	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	0.010000	0.517413	
mm_112779.1	chr13	20090486	20090686	+	1	NA	NA	NA	79	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.110000	0.681592	
mm_43288.1	chr5	134141520	134141720	+	1	NA	NA	NA	35147	NM_033572	94254	Mm.29508	NM_033572	ENSMUSG00000061979	Rcc1l	5730496C04Rik|AU019812|Wbscr16	reculator of chromosome condensation 1 like	protein-coding	0.020000	0.517413	
mm_10479.1	chr2	14604127	14604327	+	1	NA	NA	NA	-79	NM_023116	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.095000	0.726368	
mm_61969.1	chr7	90442812	90443012	+	1	NA	NA	NA	131	NR_073438	233490	Mm.29496	NM_145151	ENSMUSG00000051451	Crebzf	1110034C16Rik|6330417B10Rik|LAZip|LAZipII|SMILE|Zf	CREB/ATF bZIP transcription factor	protein-coding	0.150000	0.815920	
mm_57111.1	chr6	122595618	122595818	-	1	NA	NA	NA	6726	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.005000	0.422886	
mm_67395.1	chr7	79858238	79858438	-	1	NA	NA	NA	-15986	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.010000	0.462687	
mm_20755.1	chr2	140660278	140660478	-	1	NA	NA	NA	11098	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.020000	0.467662	
mm_88212.1	chr10	70204562	70204762	+	1	NA	NA	NA	-2	NM_001304739	69563	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Mln	myoregulin	protein-coding	0.020000	0.517413	
mm_77870.1	chr9	6168355	6168555	+	1	NA	NA	NA	-157	NM_027924	71785	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0.045000	0.616915	
mm_17172.1	chr2	25316786	25316986	-	1	NA	NA	NA	2301	NM_008169	14810	Mm.278672	NM_008169	ENSMUSG00000026959	Grin1	GluN1|GluRdelta1|GluRzeta1|M100174|NMD-R1|NMDAR1|NR1|Nmdar|Rgsc174	glutamate receptor, ionotropic, NMDA1 (zeta 1)	protein-coding	0.035000	0.567164	
mm_70962.1	chr8	26980376	26980576	+	1	NA	NA	NA	3140	NM_001110508	353310	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.000000	0.398010	
mm_147144.1	chr18	36559741	36559941	-	1	NA	NA	NA	-762	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.075000	0.621891	
mm_117518.1	chr13	81004362	81004562	-	1	NA	NA	NA	40388	NR_015587	319983	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.005000	0.398010	
mm_153495.1	chr19	41332180	41332380	-	1	NA	NA	NA	52790	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.045000	0.557214	
mm_22149.1	chr2	172397963	172398163	-	1	NA	NA	NA	4269	NM_001276423	320664	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.010000	0.422886	
mm_122547.1	chr14	48662646	48662846	-	1	NA	NA	NA	126	NM_144841	18424	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	0.040000	0.557214	-38(CTCCTTTAAAAG,-,0.00),-37(TCCTTTAAAAGC,-,0.00),-36(CCTTTAAAAGCC,+,0.00)
mm_135830.1	chr16	58523255	58523455	-	1	NA	NA	NA	-43	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.100000	0.696517	
mm_93541.1	chr10	115384674	115384874	-	1	NA	NA	NA	-185	NM_001033261	216345	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0.055000	0.611940	
mm_135031.1	chr16	32810388	32810588	-	1	NA	NA	NA	-42	NM_001256309	381043	Mm.303864	NM_001256309	ENSMUSG00000094430	Gm933	Gm1743	predicted gene 933	protein-coding	0.005000	0.572139	
mm_169511.1	chr14	85379566	85379766	+	1	NA	NA	NA	-866304	NR_040457	75155	Mm.399239	NR_040457		4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	0.000000	0.452736	
mm_109126.1	chr12	105761352	105761552	+	1	NA	NA	NA	-23245	NM_011112	18789	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0.025000	0.452736	
mm_133577.1	chr16	91406905	91407105	+	1	NA	NA	NA	770	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.020000	0.497512	
mm_124473.1	chr14	121379098	121379298	-	1	NA	NA	NA	32	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.155000	0.805970	
mm_110088.1	chr12	25002780	25002980	-	1	NA	NA	NA	27948	NM_001081378	77480	Mm.250641	NM_001081378	ENSMUSG00000036333	Kidins220	3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250	kinase D-interacting substrate 220	protein-coding	0.000000	0.323383	-7(CTGCATAAAAAC,-,0.00)
mm_165968.1	chr4	96244798	96244998	+	1	NA	NA	NA	-103746	NM_001100182	242546	Mm.302562	NM_001100182	ENSMUSG00000081225	Cyp2j12	BB197342|Cyp2j12-ps|OTTMUSG00000007939	cytochrome P450, family 2, subfamily j, polypeptide 12	protein-coding	0.000000	0.482587	
mm_58388.1	chr7	3180973	3181173	+	1	NA	NA	NA	-11870	NM_001004153	245128	Mm.268551	NM_001004153	ENSMUSG00000054753	AU018091	-	expressed sequence AU018091	protein-coding	0.060000	0.467662	
mm_100754.1	chr11	4240077	4240277	-	1	NA	NA	NA	3392	NM_001013365	18413	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.015000	0.542289	
mm_52272.1	chr6	108549800	108550000	+	1	NA	NA	NA	60157	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.015000	0.467662	
mm_30109.1	chr3	139002193	139002393	-	1	NA	NA	NA	72908	NM_145544	229877	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.015000	0.512438	
mm_39762.1	chr5	30013042	30013242	+	1	NA	NA	NA	28	NM_031168	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.015000	0.447761	
mm_60904.1	chr7	46712122	46712322	+	1	NA	NA	NA	-1571	NM_030233	78935	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.020000	0.527363	
mm_148798.1	chr19	6226280	6226480	+	1	NA	NA	NA	-21	NM_130453	170458	Mm.379306	NM_130453	ENSMUSG00000024784	Gpha2	GPA2|zsig51	glycoprotein hormone alpha 2	protein-coding	0.010000	0.592040	
mm_85564.1	chr9	106891839	106892039	-	1	NA	NA	NA	-1	NM_029103	74840	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	0.110000	0.686567	
mm_15932.1	chr2	165530018	165530218	+	1	NA	NA	NA	26221	NM_130451	170441	Mm.34147	NM_130451	ENSMUSG00000027661	Slc2a10	AA450473|Glut10	solute carrier family 2 (facilitated glucose transporter), member 10	protein-coding	0.015000	0.626866	
mm_25117.1	chr3	102010019	102010219	+	1	NA	NA	NA	-26	NM_178777	18072	Mm.137286	NM_178777	ENSMUSG00000048540	Nhlh2	6230401I09Rik|Hen2|NSCL2|Nscl-2|bHLHa34	nescient helix loop helix 2	protein-coding	0.005000	0.457711	
mm_30968.1	chr4	34124840	34125040	+	1	NA	NA	NA	-74873	NM_026293	67652	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.000000	0.398010	66(CTTTTTATGGAT,+,0.00)
mm_2961.1	chr1	132880327	132880527	+	1	NA	NA	NA	72	NM_010732	16980	Mm.39640	NM_010732	ENSMUSG00000026443	Lrrn2	5730406J09Rik|NLRR-2	leucine rich repeat protein 2, neuronal	protein-coding	0.145000	0.771144	
mm_106355.1	chr11	118393527	118393727	-	1	NA	NA	NA	8304	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.025000	0.572139	
mm_141891.1	chr17	34861786	34861986	-	1	NA	NA	NA	628	NM_001142706	14962	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0.030000	0.582090	
mm_151684.1	chr19	4269166	4269366	-	1	NA	NA	NA	-94	NM_198113	245857	Mm.248388	NM_198113	ENSMUSG00000034616	Ssh3	BC028922|SSH-3|mSSH-3L	slingshot homolog 3 (Drosophila)	protein-coding	0.090000	0.686567	38(GGCCCTTTAAGG,-,0.00),39(GCCCTTTAAGGG,-,0.00),40(CCCTTTAAGGGC,+,0.00),41(CCTTTAAGGGCC,+,0.00)
mm_20860.1	chr2	148437111	148437311	-	1	NA	NA	NA	6324	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.005000	0.462687	
mm_25003.1	chr3	97651759	97651959	+	1	NA	NA	NA	-6353	NM_182997	108097	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.020000	0.492537	
mm_93286.1	chr10	96185623	96185823	-	1	NA	NA	NA	-40484	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.005000	0.378109	
mm_22187.1	chr2	173247138	173247338	-	1	NA	NA	NA	-28316	NM_001139519	58203	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.005000	0.572139	
mm_103662.1	chr11	79023415	79023615	-	1	NA	NA	NA	-82	NR_045873	790910	Mm.440410	NR_045873		Gm11201	ENSMUSG00000072637|OTTMUSG00000000169	predicted gene 11201	ncRNA	0.015000	0.582090	
mm_141593.1	chr17	32424015	32424215	-	1	NA	NA	NA	52	NM_001271476	57757	Mm.86752	NM_021319	ENSMUSG00000079563	Pglyrp2	C730002N09Rik|PGRP-L|Pglyrpl|tagL	peptidoglycan recognition protein 2	protein-coding	0.010000	0.507463	
mm_130550.1	chr15	98985673	98985873	-	1	NA	NA	NA	-192	NR_045991	75951	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.045000	0.547264	
mm_153727.1	chr19	44407608	44407808	-	1	NA	NA	NA	1	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.030000	0.592040	58(GCCGATAAAAGG,-,0.00)
mm_12468.1	chr2	71421136	71421336	+	1	NA	NA	NA	6760	NR_039557	100628577		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.040000	0.437811	
mm_111116.1	chr12	80967537	80967737	-	1	NA	NA	NA	442	NM_011387	20493	Mm.486361	NM_011387	ENSMUSG00000021135	Slc10a1	Ntcp	solute carrier family 10 (sodium/bile acid cotransporter family), member 1	protein-coding	0.015000	0.577114	
mm_128377.1	chr15	42676698	42676898	-	1	NA	NA	NA	179	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.025000	0.482587	
mm_56935.1	chr6	119847974	119848174	-	1	NA	NA	NA	76	NM_053204	111173	Mm.288860	NM_053204	ENSMUSG00000030172	Erc1	4930404L01Rik|5033405M01Rik|9630025C19Rik|B430107L16Rik|CAST2|ELKS|Elks1|RAB6IP2A|RAB6IP2B|Rab6ip2|mKIAA1081	ELKS/RAB6-interacting/CAST family member 1	protein-coding	0.145000	0.746269	
mm_65812.1	chr7	29042164	29042364	-	1	NA	NA	NA	41430	NR_035489	100316710		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	0.000000	0.427861	-31(CCATATATACAC,+,0.00)
mm_123495.1	chr14	66178942	66179142	-	1	NA	NA	NA	34510	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.035000	0.532338	
mm_138185.1	chr17	34267900	34268100	+	1	NA	NA	NA	4773	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.030000	0.606965	
mm_84391.1	chr9	65499813	65500013	-	1	NA	NA	NA	38976	NM_138584	27965	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	spastic paraplegia 21 homolog (human)	protein-coding	0.000000	0.427861	
mm_41751.1	chr5	102845141	102845341	+	1	NA	NA	NA	234	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.030000	0.621891	
mm_136930.1	chr17	13874472	13874672	+	1	NA	NA	NA	-73801	NM_001122977	635895	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.005000	0.527363	
mm_118019.1	chr13	100786506	100786706	-	1	NA	NA	NA	-120	NM_172301	268697	Mm.260114	NM_172301	ENSMUSG00000041431	Ccnb1	Ccnb1-rs1|Ccnb1-rs13|CycB1|Cycb-4|Cycb-5|Cycb1-rs1	cyclin B1	protein-coding	0.115000	0.696517	
mm_96552.1	chr11	68888483	68888683	+	1	NA	NA	NA	30	NM_177060	320040	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	0.025000	0.582090	
mm_81892.1	chr9	119434656	119434856	+	1	NA	NA	NA	-10167	NM_001172136	208194	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	0.020000	0.348259	
mm_122473.1	chr14	45598558	45598758	-	1	NA	NA	NA	54948	NR_045809	67651	Mm.55930	NR_045809		4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	0.005000	0.432836	
mm_90381.1	chr10	127274889	127275089	+	1	NA	NA	NA	8727	NM_001190453	69654	Mm.167537	NM_027151	ENSMUSG00000025410	Dctn2	2310042E05Rik|C130077D06Rik|C87049|DCTN-50|GMP23-48K|RBP50|p50	dynactin 2	protein-coding	0.015000	0.512438	
mm_87576.1	chr10	56388304	56388504	+	1	NA	NA	NA	11104	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.035000	0.512438	
mm_141511.1	chr17	31678017	31678217	-	1	NA	NA	NA	186	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.045000	0.592040	
mm_156301.1	chrX	136837799	136837999	+	1	NA	NA	NA	15153	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.348259	
mm_109943.1	chr12	11326258	11326458	-	1	NA	NA	NA	26471	NR_106136	102465775		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.020000	0.442786	
mm_6886.1	chr1	84695726	84695926	-	1	NA	NA	NA	-13	NR_039588	100628595		NR_039588	ENSMUSG00000093254	Mir5126	mir-5126|mmu-mir-5126|mu-mir-5126	microRNA 5126	ncRNA	0.130000	0.761194	
mm_48727.1	chr5	147400289	147400489	-	1	NA	NA	NA	100	NM_010229	14255	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	0.095000	0.711443	
mm_148915.1	chr19	6975024	6975224	+	1	NA	NA	NA	76	NM_008889	18938	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.160000	0.840796	
mm_133369.1	chr16	84708954	84709154	+	1	NA	NA	NA	-3969	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.005000	0.323383	
mm_119190.1	chr14	32347767	32347967	+	1	NA	NA	NA	25848	NM_001081130	239017	Mm.318302	NM_001081130	ENSMUSG00000021913	Ogdhl	-	oxoglutarate dehydrogenase-like	protein-coding	0.015000	0.422886	
mm_143332.1	chr17	66479298	66479498	-	1	NA	NA	NA	-29648	NM_001114098	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.045000	0.592040	
mm_116181.1	chr13	30950220	30950420	-	1	NA	NA	NA	-2559	NM_153072	210554	Mm.450571	NM_153072	ENSMUSG00000076430	Hus1b	-	HUS1 checkpoint clamp component B	protein-coding	0.000000	0.427861	
mm_25149.1	chr3	102760801	102761001	+	1	NA	NA	NA	21813	NM_009432	22094	Mm.110730	NM_009432	ENSMUSG00000027857	Tshb	-	thyroid stimulating hormone, beta subunit	protein-coding	0.010000	0.567164	
mm_72269.1	chr8	75099783	75099983	+	1	NA	NA	NA	6265	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.020000	0.552239	
mm_104221.1	chr11	88428766	88428966	-	1	NA	NA	NA	76093	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	0.035000	0.507463	-8(CCTCATAAAGGA,+,0.00)
mm_165782.1	chr3	131111697	131111897	-	1	NA	NA	NA	-994	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.075000	0.636816	
mm_40104.1	chr5	34660216	34660416	+	1	NA	NA	NA	-63	NM_001080743	14772	Mm.117076	NM_019497	ENSMUSG00000052783	Grk4	A830025H08Rik|GRK|Gprk2l|Gprk4	G protein-coupled receptor kinase 4	protein-coding	0.060000	0.597015	
mm_21800.1	chr2	164911129	164911329	-	1	NA	NA	NA	521	NM_199027	329559	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0.100000	0.761194	
mm_165204.1	chr2	33353531	33353731	-	1	NA	NA	NA	17863	NM_001290570	241308	Mm.274249	NM_175211	ENSMUSG00000038831	Ralgps1	5830418G11Rik|AI853783|AI854138|RALGEF2|RALGPS1A|RalGEF 2|mKIAA0351	Ral GEF with PH domain and SH3 binding motif 1	protein-coding	0.015000	0.517413	
mm_48336.1	chr5	139129907	139130107	-	1	NA	NA	NA	-255	NM_008923	19085	Mm.306163	NM_008923	ENSMUSG00000025855	Prkar1b	AI385716|RIbeta	protein kinase, cAMP dependent regulatory, type I beta	protein-coding	0.035000	0.597015	
mm_157871.1	chrX	75416444	75416644	-	1	NA	NA	NA	40	NM_010839	105886298	Mm.16366	NM_010839	ENSMUSG00000090110	Cmc4	Mtcp1nb|p8MTCP1	C-x(9)-C motif containing 4	protein-coding	0.060000	0.661692	
mm_18797.1	chr2	73892101	73892301	-	1	NA	NA	NA	438	NM_001284371	11909	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0.115000	0.681592	
mm_135515.1	chr16	48771961	48772161	-	1	NA	NA	NA	-105	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.010000	0.373134	54(CGGCATTTAAGG,-,0.00)
mm_123897.1	chr14	73116918	73117118	-	1	NA	NA	NA	-25492	NM_001170694	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.010000	0.487562	60(CCTTTTAAAAAG,+,0.00),60(CCTTTTAAAAAG,-,0.00)
mm_129759.1	chr15	82380177	82380377	-	1	NA	NA	NA	-17	NM_001163472	56448	Mm.474216	NM_019823	ENSMUSG00000061740	Cyp2d22	2D22	cytochrome P450, family 2, subfamily d, polypeptide 22	protein-coding	0.025000	0.626866	
mm_136972.1	chr17	15747706	15747906	+	1	NA	NA	NA	42839	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.020000	0.422886	
mm_23010.1	chr3	34196828	34197028	+	1	NA	NA	NA	-115574	NM_026332	67713	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.055000	0.552239	
mm_124672.1	chr15	6407864	6408064	+	1	NA	NA	NA	21216	NM_001310446	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.000000	0.407960	
mm_153433.1	chr19	40955477	40955677	-	1	NA	NA	NA	38958	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.020000	0.492537	
mm_24773.1	chr3	95529382	95529582	+	1	NA	NA	NA	2696	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.005000	0.462687	
mm_33048.1	chr4	123016502	123016702	+	1	NA	NA	NA	5	NM_025873	66966	Mm.235030	NM_025873	ENSMUSG00000028653	Trit1	2310075G14Rik|AI314189|AI314635|AV099619|IPT|MOD5	tRNA isopentenyltransferase 1	protein-coding	0.080000	0.626866	
mm_9853.1	chr1	184732563	184732763	-	1	NA	NA	NA	-170	NM_008250	15284	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.060000	0.527363	56(GTTTTTAGAGAG,+,0.00)
mm_126456.1	chr15	80930443	80930643	+	1	NA	NA	NA	-9496	NR_039573	100628612		NR_039573	ENSMUSG00000092868	Mir5113	mir-5113|mmu-mir-5113|mu-mir-5113	microRNA 5113	ncRNA	0.020000	0.542289	
mm_95553.1	chr11	52309420	52309620	+	1	NA	NA	NA	-26506	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.000000	0.502488	
mm_52854.1	chr6	121870488	121870688	+	1	NA	NA	NA	32047	NM_008645	17836	Mm.1311	NM_008645	ENSMUSG00000059908	Mug1	-	murinoglobulin 1	protein-coding	0.015000	0.422886	
mm_125291.1	chr15	36771017	36771217	+	1	NA	NA	NA	19815	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.020000	0.537313	-100(GGATTTTAAAGG,-,0.00),-99(GATTTTAAAGGG,-,0.00),-76(GACCATTTAGGG,-,0.00),-74(CCATTTAGGGCA,+,0.00)
mm_5931.1	chr1	55362621	55362821	-	1	NA	NA	NA	-14	NM_001113367	75388	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	bol, boule-like (Drosophila)	protein-coding	0.110000	0.696517	
mm_32371.1	chr4	105578199	105578399	+	1	NA	NA	NA	420952	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.025000	0.472637	
mm_31492.1	chr4	53011847	53012047	+	1	NA	NA	NA	67	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.140000	0.726368	
mm_68733.1	chr7	120754013	120754213	-	1	NA	NA	NA	14556	NM_177697	233813	Mm.389939	NM_177697	ENSMUSG00000030889	Vwa3a	E030013G06Rik	von Willebrand factor A domain containing 3A	protein-coding	0.045000	0.492537	
mm_21461.1	chr2	160872897	160873097	-	1	NA	NA	NA	-7	NM_177263	320799	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	0.135000	0.756219	
mm_91659.1	chr10	42768133	42768333	-	1	NA	NA	NA	6737	NM_153055	140740	Mm.214344	NM_153055	ENSMUSG00000019802	Sec63	5730478J10Rik|AI649014|AW319215	SEC63-like (S. cerevisiae)	protein-coding	0.020000	0.447761	
mm_10330.1	chr2	11521607	11521807	+	1	NA	NA	NA	-19617	NM_001177757	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.020000	0.517413	
mm_143299.1	chr17	65961382	65961582	-	1	NA	NA	NA	-10295	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.010000	0.452736	-36(AGCTTTAAAAGC,-,0.00),-35(GCTTTAAAAGCA,+,0.00)
mm_127616.1	chr15	102460356	102460556	+	1	NA	NA	NA	1286	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.020000	0.582090	
mm_19456.1	chr2	92370918	92371118	-	1	NA	NA	NA	39	NM_001290774	228366	Mm.31158	NM_172670	ENSMUSG00000040434	Large2	5730485C17Rik|AI891893|Gyltl1b|Largel|mKIAA4105	LARGE xylosyl- and glucuronyltransferase 2	protein-coding	0.070000	0.676617	
mm_13628.1	chr2	113640647	113640847	+	1	NA	NA	NA	-44343	NM_001287818	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.010000	0.402985	
mm_8925.1	chr1	163994651	163994851	-	1	NA	NA	NA	30	NM_201364	381306	Mm.28152	NM_201364	ENSMUSG00000041406	BC055324	-	cDNA sequence BC055324	protein-coding	0.095000	0.641791	
mm_23516.1	chr3	60575738	60575938	+	1	NA	NA	NA	74659	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.015000	0.313433	
mm_154958.1	chrX	36795548	36795748	+	1	NA	NA	NA	51	NM_007451	11740	Mm.371544	NM_007451	ENSMUSG00000016319	Slc25a5	Ant2	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5	protein-coding	0.085000	0.631841	-30(CGCTATATAAGT,-,0.00)
mm_4453.1	chr1	172698900	172699100	+	1	NA	NA	NA	944	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding	0.015000	0.492537	
mm_16712.1	chr2	7099216	7099416	-	1	NA	NA	NA	-18014	NM_001160292	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.010000	0.323383	
mm_121352.1	chr14	116925430	116925630	+	1	NA	NA	NA	233	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.120000	0.646766	81(GTGTTTAAAAAA,-,0.00)
mm_18093.1	chr2	44986401	44986601	-	1	NA	NA	NA	36676	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.005000	0.288557	
mm_76542.1	chr8	87960715	87960915	-	1	NA	NA	NA	-1220	NM_033327	94187	Mm.23452	NM_033327	ENSMUSG00000045333	Zfp423	Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12	zinc finger protein 423	protein-coding	0.090000	0.641791	
mm_33575.1	chr4	132310595	132310795	+	1	NA	NA	NA	-8	NR_028537	100217437		NR_028537		Snord99	MBII-420	small nucleolar RNA, C/D box 99	snoRNA	0.005000	0.437811	
mm_50590.1	chr6	49060948	49061148	+	1	NA	NA	NA	-12747	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.005000	0.502488	
mm_32787.1	chr4	116720862	116721062	+	1	NA	NA	NA	7	NM_146151	230661	Mm.482431	NM_146151	ENSMUSG00000033985	Tesk2	-	testis-specific kinase 2	protein-coding	0.075000	0.701493	
mm_109321.1	chr12	109561817	109562017	+	1	NA	NA	NA	-1775	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.030000	0.432836	
mm_69313.1	chr7	128418594	128418794	-	1	NA	NA	NA	-522	NM_026418	67865	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.065000	0.577114	
mm_21235.1	chr2	156111827	156112027	-	1	NA	NA	NA	38	NM_170598	75710	Mm.27660	NM_029397	ENSMUSG00000089824	Rbm12	5730420G12Rik|9430070C08Rik|AI852903|SWAN|mKIAA0765	RNA binding motif protein 12	protein-coding	0.125000	0.726368	
mm_22511.1	chr3	7615898	7616098	+	1	NA	NA	NA	-2238	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.000000	0.512438	
mm_2175.1	chr1	88406873	88407073	+	1	NA	NA	NA	-37	NM_029269	75396	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	0.010000	0.487562	
mm_18725.1	chr2	72952942	72953142	-	1	NA	NA	NA	26239	NM_001098425	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.005000	0.422886	
mm_24312.1	chr3	89418566	89418766	+	1	NA	NA	NA	115	NM_011368	20416	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	0.055000	0.582090	
mm_7081.1	chr1	88277473	88277673	-	1	NA	NA	NA	6	NM_198652	381280	Mm.384762	NM_198652	ENSMUSG00000044783	Hjurp	6430706D22Rik|A730008H23Rik|C330011F01Rik|Gm975|Mfleg1	Holliday junction recognition protein	protein-coding	0.110000	0.651741	
mm_28150.1	chr3	87684539	87684739	-	1	NA	NA	NA	63984	NM_028971	74485	Mm.474494	NM_028971	ENSMUSG00000023084	Lrrc71	4933430H15Rik	leucine rich repeat containing 71	protein-coding	0.005000	0.447761	
mm_170771.1	chr2	162999110	162999310	+	1	NA	NA	NA	7795	NM_001291152	27219	Mm.26462	NM_013731	ENSMUSG00000017868	Sgk2	AI098171|AW146006|Sgkl	serum/glucocorticoid regulated kinase 2	protein-coding	0.050000	0.587065	
mm_150194.1	chr19	32665935	32666135	+	1	NA	NA	NA	46030	NM_011864	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.010000	0.398010	
mm_167145.1	chr7	128266254	128266454	+	1	NA	NA	NA	657	NM_133254	246787	Mm.38870	NM_133254	ENSMUSG00000030781	Slc5a2	Sglt2	solute carrier family 5 (sodium/glucose cotransporter), member 2	protein-coding	0.010000	0.567164	
mm_140414.1	chr17	87650359	87650559	+	1	NA	NA	NA	14480	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.030000	0.527363	
mm_70074.1	chr7	142653097	142653297	-	1	NA	NA	NA	1799	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.005000	0.487562	
mm_8376.1	chr1	151250126	151250326	-	1	NA	NA	NA	-94272	NM_001039512	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.010000	0.393035	-84(CACCATAAAAAG,-,0.00),-82(CCATAAAAAGCC,+,0.00)
mm_90213.1	chr10	120787191	120787391	+	1	NA	NA	NA	21559	NR_038003	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.025000	0.567164	-85(TGCTTTAAAGGC,-,0.00),-84(GCTTTAAAGGCT,+,0.00)
mm_87010.1	chr10	26880619	26880819	+	1	NA	NA	NA	108207	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.005000	0.378109	
mm_80225.1	chr9	72662307	72662507	+	1	NA	NA	NA	60	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.125000	0.726368	
mm_27103.1	chr3	30509673	30509873	-	1	NA	NA	NA	-286	NM_021442	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.070000	0.547264	
mm_25454.1	chr3	108383892	108384092	+	1	NA	NA	NA	154	NM_019976	56742	Mm.389499	NM_019976	ENSMUSG00000068744	Psrc1	5430413I02Rik|AL033312|Dda3	proline/serine-rich coiled-coil 1	protein-coding	0.060000	0.592040	
mm_135873.1	chr16	62846759	62846959	-	1	NA	NA	NA	181	NM_026577	68146	Mm.96833	NM_026577	ENSMUSG00000022911	Arl13b	A530097K21Rik|A930014M17Rik|Arl2l1|C530009C10Rik|hnn	ADP-ribosylation factor-like 13B	protein-coding	0.095000	0.736318	
mm_120341.1	chr14	63606298	63606498	+	1	NA	NA	NA	-132	NM_173393	219149	Mm.32071	NM_173393	ENSMUSG00000035067	Xkr6	2700008G24Rik|BC024502|Xrg6	X-linked Kx blood group related 6	protein-coding	0.090000	0.751244	
mm_142849.1	chr17	51798203	51798403	-	1	NA	NA	NA	13751	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.005000	0.398010	
mm_5940.1	chr1	56637327	56637527	-	1	NA	NA	NA	24	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	0.005000	0.432836	
mm_104486.1	chr11	95799715	95799915	-	1	NA	NA	NA	-24685	NM_153104	237928	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.000000	0.358209	
mm_15405.1	chr2	156743671	156743871	+	1	NA	NA	NA	22492	NM_001042487	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.010000	0.447761	
mm_26088.1	chr3	136702665	136702865	+	1	NA	NA	NA	32699	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.005000	0.268657	
mm_75777.1	chr8	69996149	69996349	-	1	NA	NA	NA	135	NM_001286450	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.110000	0.676617	
mm_46599.1	chr5	107856837	107857037	-	1	NA	NA	NA	18170	NM_007964	14020	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0.005000	0.432836	
mm_50569.1	chr6	49050333	49050533	+	1	NA	NA	NA	13915	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.010000	0.393035	
mm_129285.1	chr15	77162880	77163080	-	1	NA	NA	NA	-9168	NM_001286418	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.005000	0.412935	
mm_99504.1	chr11	103028458	103028658	+	1	NA	NA	NA	-4	NM_008707	18107	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.055000	0.552239	
mm_42159.1	chr5	112206690	112206890	+	1	NA	NA	NA	27	NR_045378	75569	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	0.020000	0.572139	
mm_172710.1	chr8	69563361	69563561	-	1	NA	NA	NA	61714	NM_001045553	234362	Mm.458487	NM_172754	ENSMUSG00000060427	Zfp868	AI449175|AW108241|C530032E20|mszf62	zinc finger protein 868	protein-coding	0.005000	0.402985	
mm_99588.1	chr11	104306593	104306793	+	1	NA	NA	NA	75257	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.055000	0.601990	
mm_45327.1	chr5	65492782	65492982	-	1	NA	NA	NA	-47	NM_133697	68552	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.125000	0.686567	
mm_100641.1	chr11	121830120	121830320	+	1	NA	NA	NA	2	NM_029049	74675	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.050000	0.611940	
mm_29325.1	chr3	108044612	108044812	-	1	NA	NA	NA	144	NM_026764	14865	Mm.31203	NM_026764	ENSMUSG00000027890	Gstm4	1110004G14Rik|GSTM7-7|Gstb-4|Gstb4	glutathione S-transferase, mu 4	protein-coding	0.040000	0.621891	
mm_30665.1	chr4	10877238	10877438	+	1	NA	NA	NA	2840	NM_026005	67157	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	0.005000	0.368159	
mm_49795.1	chr6	35261183	35261383	+	1	NA	NA	NA	8551	NR_027875	67705	Mm.228046	NR_015608	ENSMUSG00000073155	1810058I24Rik	AI414869|AI848234	RIKEN cDNA 1810058I24 gene	ncRNA	0.020000	0.572139	
mm_117836.1	chr13	98637264	98637464	-	1	NA	NA	NA	46	NM_026685	68344	Mm.28766	NM_026685	ENSMUSG00000046082	Tmem174	0610009B10Rik|AA986094	transmembrane protein 174	protein-coding	0.030000	0.487562	
mm_113771.1	chr13	44840645	44840845	+	1	NA	NA	NA	109474	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.050000	0.582090	
mm_13808.1	chr2	119047282	119047482	+	1	NA	NA	NA	263	NM_029617	76464	Mm.202518	NM_029617	ENSMUSG00000027326	Knl1	2310043D08Rik|5730505K17Rik|Casc5	kinetochore scaffold 1	protein-coding	0.145000	0.691542	
mm_50593.1	chr6	49069445	49069645	+	1	NA	NA	NA	-4250	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.000000	0.398010	
mm_71766.1	chr8	66425757	66425957	+	1	NA	NA	NA	39556	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.000000	0.398010	
mm_149872.1	chr19	25155732	25155932	+	1	NA	NA	NA	-81370	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.030000	0.482587	
mm_158650.1	chrX	155606199	155606399	-	1	NA	NA	NA	17028	NM_001093750	211612	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	0.005000	0.318408	
mm_74302.1	chr8	126422396	126422596	+	1	NA	NA	NA	-5	NM_174987	67892	Mm.31946	NM_174987	ENSMUSG00000051671	Coa6	1810063B05Rik|AI447995	cytochrome c oxidase assembly factor 6	protein-coding	0.105000	0.626866	
mm_138916.1	chr17	43607032	43607232	+	1	NA	NA	NA	-15623	NR_045444	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.020000	0.442786	
mm_80729.1	chr9	92691817	92692017	+	1	NA	NA	NA	-26799	NR_040770	331003	Mm.50805	NR_040770	ENSMUSG00000101734	4933400C23Rik	4933400C23	RIKEN cDNA 4933400C23 gene	ncRNA	0.010000	0.462687	
mm_168989.1	chr12	99645031	99645231	+	1	NA	NA	NA	-17157	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.120000	0.686567	
mm_130458.1	chr15	98567669	98567869	-	1	NA	NA	NA	-133	NM_009833	12455	Mm.29941	NM_009833	ENSMUSG00000011960	Ccnt1	2810478G24Rik|AI115585|CycT1	cyclin T1	protein-coding	0.115000	0.631841	
mm_126092.1	chr15	77911236	77911436	+	1	NA	NA	NA	17658	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.010000	0.597015	
mm_27742.1	chr3	69125263	69125463	-	1	NA	NA	NA	1729	NM_008467	16649	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	0.000000	0.427861	
mm_42985.1	chr5	123273650	123273850	+	1	NA	NA	NA	45560	NM_026000	67151	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0.025000	0.517413	
mm_13973.1	chr2	121435817	121436017	+	1	NA	NA	NA	6684	NM_145973	269344	Mm.330522	NM_145973	ENSMUSG00000027246	Ell3	A930015D22Rik	elongation factor RNA polymerase II-like 3	protein-coding	0.005000	0.388060	
mm_104110.1	chr11	86717934	86718134	-	1	NA	NA	NA	33953	NM_001098810	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.005000	0.398010	
mm_115208.1	chr13	109260256	109260456	+	1	NA	NA	NA	-64388	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.045000	0.572139	
mm_129630.1	chr15	80228314	80228514	-	1	NA	NA	NA	-5666	NM_178719	239555	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.025000	0.562189	
mm_83397.1	chr9	44721334	44721534	-	1	NA	NA	NA	13764	NM_153537	102693	Mm.28639	NM_153537	ENSMUSG00000048537	Phldb1	AU041016|D330037A14Rik|Ll5a	pleckstrin homology like domain, family B, member 1	protein-coding	0.080000	0.731343	
mm_60421.1	chr7	44476300	44476500	+	1	NA	NA	NA	6053	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.427861	
mm_33495.1	chr4	130823543	130823743	+	1	NA	NA	NA	31106	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.025000	0.542289	
mm_168722.1	chr12	110485681	110485881	+	1	NA	NA	NA	42	NM_012023	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.025000	0.472637	
mm_24497.1	chr3	92373815	92374015	+	1	NA	NA	NA	0	NR_003548	20761	Mm.57083	NR_003548	ENSMUSG00000046203	Sprr2g	-	small proline-rich protein 2G	pseudo	0.005000	0.432836	-32(TTCTATAAAGAG,-,0.00)
mm_39438.1	chr5	16870073	16870273	+	1	NA	NA	NA	316272	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.005000	0.323383	
mm_51227.1	chr6	71373385	71373585	+	1	NA	NA	NA	58	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.035000	0.601990	
mm_120591.1	chr14	70075061	70075261	+	1	NA	NA	NA	-2284	NM_018781	13655	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.110000	0.746269	
mm_163066.1	chr11	67170926	67171126	+	1	NA	NA	NA	-1	NM_001039545	17882	Mm.422801	NM_144961	ENSMUSG00000033196	Myh2	MHC2A|MyHC-IIa|Myh2a|Myhs-f|Myhs-f1|Myhsf1	myosin, heavy polypeptide 2, skeletal muscle, adult	protein-coding	0.035000	0.477612	8(CCATATAAAAGA,-,0.00),44(TGCTTTAAAAAG,-,0.00),45(GCTTTAAAAAGC,+,0.00),46(CTTTAAAAAGCT,+,0.00)
mm_140968.1	chr17	24689784	24689984	-	1	NA	NA	NA	65	NM_011522	20974	Mm.26032	NM_011522	ENSMUSG00000007021	Syngr3	-	synaptogyrin 3	protein-coding	0.120000	0.731343	
mm_33898.1	chr4	136247923	136248123	+	1	NA	NA	NA	66	NM_011542	21401	Mm.112	NM_011542	ENSMUSG00000001604	Tcea3	S-II|SII-K1	transcription elongation factor A (SII), 3	protein-coding	0.095000	0.681592	
mm_134954.1	chr16	31310958	31311158	-	1	NA	NA	NA	3750	NM_001301353	11815	Mm.2082	NM_007470	ENSMUSG00000022548	Apod	-	apolipoprotein D	protein-coding	0.030000	0.512438	
mm_68405.1	chr7	109616346	109616546	-	1	NA	NA	NA	122	NR_037617	76954	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.020000	0.592040	
mm_1326.1	chr1	65110201	65110401	+	1	NA	NA	NA	-6938	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.015000	0.442786	
mm_143621.1	chr17	78854976	78855176	-	1	NA	NA	NA	-2532	NR_003363	625054	Mm.311918	NR_003363		Gm6548	EG625054	eukaryotic translation elongation factor 1 alpha 1 pseudogene	pseudo	0.010000	0.402985	
mm_161922.1	chr18	74273443	74273643	+	1	NA	NA	NA	5255	NM_013594	17190	Mm.22522	NM_013594	ENSMUSG00000024561	Mbd1	Cxxc3|PCM1	methyl-CpG binding domain protein 1	protein-coding	0.030000	0.517413	
mm_25999.1	chr3	134828904	134829104	+	1	NA	NA	NA	-3	NM_021382	21338	Mm.103810	NM_021382	ENSMUSG00000028172	Tacr3	Nk3r|Nkr|Tac3r	tachykinin receptor 3	protein-coding	0.040000	0.621891	
mm_73480.1	chr8	107019295	107019495	+	1	NA	NA	NA	-11931	NM_126165	116733	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0.000000	0.323383	
mm_64453.1	chr7	142659064	142659264	+	1	NA	NA	NA	-360	NM_010514	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.085000	0.701493	
mm_74236.1	chr8	124520721	124520921	+	1	NA	NA	NA	54	NM_029746	76332	Mm.240108	NM_029746	ENSMUSG00000031979	Cog2	1190002B08Rik|2700012E02Rik|C86089|Ldlc	component of oligomeric golgi complex 2	protein-coding	0.110000	0.686567	
mm_74436.1	chr8	3754451	3754651	-	1	NA	NA	NA	-5567	NM_133238	170786	Mm.32510	NM_133238	ENSMUSG00000031494	Cd209a	CD209|CDSIGN|CIRE|DC-SIGN|DC-SIGN1|Dcsign|SIGN-R1|SIGNR5	CD209a antigen	protein-coding	0.055000	0.547264	
mm_88983.1	chr10	81563736	81563936	+	1	NA	NA	NA	4392	NM_001276288	14797	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.015000	0.542289	-24(GTCCTTAAATGC,-,0.00),-22(CCTTAAATGCAG,+,0.00)
mm_65850.1	chr7	29258458	29258658	-	1	NA	NA	NA	-10091	NM_028179	72275	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0.050000	0.547264	
mm_9802.1	chr1	181865562	181865762	-	1	NA	NA	NA	-23261	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.015000	0.572139	
mm_104477.1	chr11	95568940	95569140	-	1	NA	NA	NA	18658	NM_033217	18053	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	0.015000	0.582090	
mm_96468.1	chr11	67643207	67643407	+	1	NA	NA	NA	46752	NM_001277079	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.035000	0.621891	
mm_87141.1	chr10	34483330	34483530	+	1	NA	NA	NA	30	NM_010237	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.015000	0.482587	-4(CCTTTTAGATCA,+,0.00)
mm_66149.1	chr7	31137235	31137435	-	1	NA	NA	NA	-10312	NM_011322	20266	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	0.000000	0.497512	
mm_137763.1	chr17	29490372	29490572	+	1	NA	NA	NA	-573	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.135000	0.726368	
mm_81603.1	chr9	110624424	110624624	+	1	NA	NA	NA	-131	NM_026012	67169	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	0.080000	0.676617	
mm_159093.1	chr2	32587533	32587733	+	1	NA	NA	NA	555	NM_011373	20448	Mm.27446	NM_011373	ENSMUSG00000079442	St6galnac4	SIAT7-D|ST6GalNAcIV|Siat7d	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 4	protein-coding	0.010000	0.542289	
mm_101388.1	chr11	24172670	24172870	-	1	NA	NA	NA	92075	NM_001159290	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.070000	0.572139	
mm_95165.1	chr11	40429743	40429943	+	1	NA	NA	NA	262839	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.015000	0.477612	
mm_1930.1	chr1	86110862	86111062	+	1	NA	NA	NA	1008	NM_008311	15559	Mm.439747	NM_008311	ENSMUSG00000026228	Htr2b	5-HT2B|AJ012488|AV377389	5-hydroxytryptamine (serotonin) receptor 2B	protein-coding	0.020000	0.457711	
mm_74598.1	chr8	11635608	11635808	-	1	NA	NA	NA	28	NR_106097	102465714		NR_106097	ENSMUSG00000104958	Mir7238	mmu-mir-7238	microRNA 7238	ncRNA	0.100000	0.676617	
mm_124812.1	chr15	8967904	8968104	+	1	NA	NA	NA	55	NM_198024	223332	Mm.321371	NM_198024	ENSMUSG00000048424	Ranbp3l	C130037N17Rik	RAN binding protein 3-like	protein-coding	0.025000	0.497512	
mm_153149.1	chr19	34251737	34251937	-	1	NA	NA	NA	3536	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.030000	0.472637	
mm_61758.1	chr7	82771463	82771663	+	1	NA	NA	NA	-15919	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.045000	0.641791	
mm_119645.1	chr14	51984609	51984809	+	1	NA	NA	NA	-124	NM_001145921	268739	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	0.095000	0.746269	
mm_167471.1	chr8	126807367	126807567	-	1	NA	NA	NA	138454	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.010000	0.512438	
mm_118994.1	chr14	28505689	28505889	+	1	NA	NA	NA	316	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.135000	0.666667	
mm_3940.1	chr1	163779570	163779770	+	1	NA	NA	NA	87	NM_010629	16579	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	0.115000	0.726368	
mm_450.1	chr1	36068281	36068481	+	1	NA	NA	NA	-19	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.190000	0.810945	
mm_108765.1	chr12	89559686	89559886	+	1	NA	NA	NA	-252697	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.015000	0.368159	
mm_122361.1	chr14	39240150	39240350	-	1	NA	NA	NA	-232179	NR_131973	432842	Mm.352566	NR_131973		LOC432842	-	uncharacterized LOC432842	ncRNA	0.000000	0.308458	
mm_47727.1	chr5	130144381	130144581	-	1	NA	NA	NA	-407	NM_172509	212919	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	0.045000	0.542289	
mm_6432.1	chr1	73962880	73963080	-	1	NA	NA	NA	-98514	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.020000	0.577114	
mm_145569.1	chr18	60911668	60911868	+	1	NA	NA	NA	-472	NM_001038499	545260	Mm.20147	NM_001038499	ENSMUSG00000036412	Arsi	BC020108	arylsulfatase i	protein-coding	0.055000	0.681592	
mm_78707.1	chr9	41376393	41376593	+	1	NA	NA	NA	-33	NR_040725	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.050000	0.587065	
mm_109745.1	chr12	117533851	117534051	+	1	NA	NA	NA	17472	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.150000	0.766169	
mm_144373.1	chr18	20557921	20558121	+	1	NA	NA	NA	-53	NM_007883	13511	Mm.345891	NM_007883	ENSMUSG00000044393	Dsg2	AA408168|D18Ertd293e	desmoglein 2	protein-coding	0.065000	0.636816	
mm_8779.1	chr1	161159212	161159412	-	1	NA	NA	NA	2	NM_001195189	100502590	Mm.449990	NM_001195189		4930469G21Rik	-	RIKEN cDNA 4930469G21 gene	protein-coding	0.005000	0.412935	
mm_24952.1	chr3	96635552	96635752	+	1	NA	NA	NA	-195	NM_001162388	18632	Mm.20901	NM_011069	ENSMUSG00000028102	Pex11b	PEX11beta|Pex11pbeta	peroxisomal biogenesis factor 11 beta	protein-coding	0.105000	0.716418	
mm_99383.1	chr11	102050082	102050282	+	1	NA	NA	NA	8671	NM_001160713	52685	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	0.015000	0.492537	-27(GCCTCTTAAAAG,-,0.00)
mm_8381.1	chr1	151250754	151250954	-	1	NA	NA	NA	-93644	NM_001039512	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.030000	0.527363	
mm_171092.1	chr3	127772129	127772329	+	1	NA	NA	NA	8298	NM_027808	71481	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	0.065000	0.626866	
mm_125413.1	chr15	41788884	41789084	+	1	NA	NA	NA	-50	NM_001130165	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.170000	0.800995	
mm_16729.1	chr2	7396117	7396317	-	1	NA	NA	NA	-19	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.015000	0.562189	
mm_48550.1	chr5	142905853	142906053	-	1	NA	NA	NA	801	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.115000	0.721393	
mm_92577.1	chr10	79983893	79984093	-	1	NA	NA	NA	337	NM_001003949	216157	Mm.29442	NM_001003949	ENSMUSG00000013858	Tmem259	AC087114.7gm2|ORF61|R32184_3|mFLJ00277	transmembrane protein 259	protein-coding	0.110000	0.656716	
mm_151421.1	chr19	56821846	56822046	+	1	NA	NA	NA	-4263	NM_001002238	83561	Mm.247541	NM_031387	ENSMUSG00000025081	Tdrd1	MTR-1	tudor domain containing 1	protein-coding	0.150000	0.771144	
mm_16424.1	chr2	180290622	180290822	+	1	NA	NA	NA	-843	NM_173031	271887	Mm.246640	NM_173031	ENSMUSG00000038980	Rbbp8nl	4732416F18	RBBP8 N-terminal like	protein-coding	0.025000	0.557214	
mm_36979.1	chr4	109656433	109656633	-	1	NA	NA	NA	8839	NM_007671	12580	Mm.1912	NM_007671	ENSMUSG00000028551	Cdkn2c	C77269|INK4c|p18|p18-INK4c|p18-INK6|p18INK4c	cyclin-dependent kinase inhibitor 2C (p18, inhibits CDK4)	protein-coding	0.015000	0.462687	
mm_169121.1	chr13	51754721	51754921	-	1	NA	NA	NA	38926	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.030000	0.626866	
mm_96847.1	chr11	70038442	70038642	+	1	NA	NA	NA	-15582	NM_001291131	11889	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.015000	0.467662	
mm_141619.1	chr17	32877793	32877993	-	1	NA	NA	NA	13710	NM_207245	240066	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0.020000	0.492537	
mm_43235.1	chr5	129978848	129979048	+	1	NA	NA	NA	23880	NM_010368	110006	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.005000	0.412935	-63(GTCTTTTTAAAG,-,0.00),-61(CTTTTTAAAGTT,+,0.00)
mm_48638.1	chr5	145191457	145191657	-	1	NA	NA	NA	35	NM_020582	57423	Mm.133551	NM_020582	ENSMUSG00000038690	Atp5j2	1110019H14Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2	protein-coding	0.060000	0.601990	
mm_42069.1	chr5	109996414	109996614	+	1	NA	NA	NA	-13	NM_145563	69504	Mm.441438	NM_145563	ENSMUSG00000066613	Zfp932	2310001H12Rik|Znf431	zinc finger protein 932	protein-coding	0.035000	0.572139	
mm_94558.1	chr11	11557917	11558117	+	1	NA	NA	NA	68751	NM_028669	73862	Mm.159077	NM_028669	ENSMUSG00000020191	4930415F15Rik	-	RIKEN cDNA 4930415F15 gene	protein-coding	0.015000	0.452736	
mm_10019.1	chr1	192074238	192074438	-	1	NA	NA	NA	18261	NM_011633	22033	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.015000	0.532338	
mm_42941.1	chr5	122989629	122989829	+	1	NA	NA	NA	375	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.010000	0.457711	89(ACTTTTAAACTC,+,0.00)
mm_67593.1	chr7	83697360	83697560	-	1	NA	NA	NA	38030	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.000000	0.412935	
mm_20953.1	chr2	151741063	151741263	-	1	NA	NA	NA	147	NM_212446	228769	Mm.146984	NM_144889	ENSMUSG00000032869	Psmf1	AW048666|BC012260|PI31	proteasome (prosome, macropain) inhibitor subunit 1	protein-coding	0.105000	0.616915	
mm_64243.1	chr7	141702507	141702707	+	1	NA	NA	NA	12267	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.015000	0.487562	
mm_108454.1	chr12	82616919	82617119	+	1	NA	NA	NA	94	NM_015812	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0.130000	0.786070	
mm_96504.1	chr11	68442708	68442908	+	1	NA	NA	NA	10683	NM_177320	320207	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik	phosphoinositide-3-kinase, regulatory subunit 5, p101	protein-coding	0.010000	0.437811	
mm_14648.1	chr2	136910532	136910732	+	1	NA	NA	NA	11281	NM_001038641	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.010000	0.303483	
mm_131010.1	chr15	103562856	103563056	-	1	NA	NA	NA	2125	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.010000	0.432836	
mm_148579.1	chr19	4962274	4962474	+	1	NA	NA	NA	68	NM_025553	66419	Mm.28494	NM_025553	ENSMUSG00000024902	Mrpl11	2410001P07Rik|L11mt	mitochondrial ribosomal protein L11	protein-coding	0.080000	0.582090	
mm_134481.1	chr16	18621907	18622107	-	1	NA	NA	NA	396	NM_001001999	14724	Mm.475622	NM_010327	ENSMUSG00000050761	Gp1bb	-	glycoprotein Ib, beta polypeptide	protein-coding	0.045000	0.587065	
mm_32075.1	chr4	98062978	98063178	+	1	NA	NA	NA	285452	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.035000	0.537313	
mm_124363.1	chr14	105641949	105642149	-	1	NA	NA	NA	-18279	NR_105814	102465207		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	0.000000	0.487562	
mm_146756.1	chr18	16808385	16808585	-	1	NA	NA	NA	761	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.095000	0.721393	
mm_148844.1	chr19	6373594	6373794	+	1	NA	NA	NA	10004	NR_122118	22668	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.015000	0.577114	
mm_104877.1	chr11	99432857	99433057	-	1	NA	NA	NA	5196	NM_023256	66809	Mm.28042	NM_023256	ENSMUSG00000035775	Krt20	9030623C06Rik|Ck-20|Ck20|K20|Krt21	keratin 20	protein-coding	0.010000	0.398010	
mm_163728.1	chr13	119601422	119601622	-	1	NA	NA	NA	-22297	NM_020279	56838	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.025000	0.641791	
mm_12525.1	chr2	72179729	72179929	+	1	NA	NA	NA	-105808	NM_023057	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.025000	0.592040	
mm_44426.1	chr5	20945338	20945538	-	1	NA	NA	NA	-5551	NR_030699	320770	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.010000	0.507463	-33(GCTCATATAGAG,+,0.00)
mm_62443.1	chr7	101383855	101384055	+	1	NA	NA	NA	-1571	NM_027180	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.010000	0.572139	
mm_31072.1	chr4	41358792	41358992	+	1	NA	NA	NA	9896	NM_023305	67123	Mm.289795	NM_023305	ENSMUSG00000028437	Ubap1	2700092A01Rik|NAG20|UBAP-1|Ubap	ubiquitin-associated protein 1	protein-coding	0.005000	0.368159	-4(GGGCTTAAATGC,-,0.00)
mm_91297.1	chr10	24915977	24916177	-	1	NA	NA	NA	5413	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.040000	0.547264	
mm_160047.1	chr6	147086875	147087075	-	1	NA	NA	NA	57	NM_001034903	545893	Mm.224739	NM_001034903	ENSMUSG00000072662	Mansc4	A430079E08|EG545893|Gm5887	MANSC domain containing 4	protein-coding	0.025000	0.606965	
mm_127058.1	chr15	97246881	97247081	+	1	NA	NA	NA	-126	NM_172293	239647	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	0.130000	0.646766	
mm_146590.1	chr18	9329856	9330056	-	1	NA	NA	NA	-47147	NM_153086	225152	Mm.119273	NM_153086	ENSMUSG00000036855	Gjd4	9430022F06Rik|Cx39	gap junction protein, delta 4	protein-coding	0.000000	0.323383	
mm_145764.1	chr18	64976769	64976969	+	1	NA	NA	NA	-46658	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.010000	0.492537	
mm_110933.1	chr12	76370285	76370485	-	1	NA	NA	NA	119	NM_178744	268564	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.130000	0.771144	
mm_66722.1	chr7	46100699	46100899	-	1	NA	NA	NA	-35	NM_001204411	16514	Mm.333863	NM_010602	ENSMUSG00000096146	Kcnj11	Kir6.2|mBIR	potassium inwardly rectifying channel, subfamily J, member 11	protein-coding	0.090000	0.711443	
mm_36506.1	chr4	83485768	83485968	-	1	NA	NA	NA	580	NM_001290527	101739	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	0.110000	0.681592	
mm_138575.1	chr17	35425232	35425432	+	1	NA	NA	NA	455	NM_207648	110557	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	0.080000	0.646766	
mm_45581.1	chr5	74009345	74009545	-	1	NA	NA	NA	58966	NM_177561	69727	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.000000	0.447761	
mm_118124.1	chr13	104205243	104205443	-	1	NA	NA	NA	-23268	NM_181061	60411	Mm.281498	NM_021790	ENSMUSG00000021714	Cenpk	B130045K24Rik|BB232189|C530004N04Rik|Cenp-K|Solt|Solzt	centromere protein K	protein-coding	0.000000	0.253731	8(CCTTTTCTGGAC,+,0.00),77(TCTTTTATAGGT,+,0.00)
mm_131750.1	chr16	22294872	22295072	+	1	NA	NA	NA	-28967	NM_001330555	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding	0.055000	0.587065	
mm_154758.1	chrX	10718439	10718639	+	1	NA	NA	NA	1174	NM_001166635	68041	Mm.29429	NM_026524	ENSMUSG00000008035	Mid1ip1	3110038L01Rik|Mig12|S14R	Mid1 interacting protein 1 (gastrulation specific G12-like (zebrafish))	protein-coding	0.075000	0.626866	
mm_61792.1	chr7	83891947	83892147	+	1	NA	NA	NA	47	NM_023403	67943	Mm.117365	NM_023403	ENSMUSG00000038503	Mesdc2	2210015O11Rik|AW537813|mKIAA0081|mesd|msd	mesoderm development candidate 2	protein-coding	0.075000	0.651741	
mm_5463.1	chr1	36445137	36445337	-	1	NA	NA	NA	34	NM_001310517	214895	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	0.090000	0.666667	
mm_4077.1	chr1	166254118	166254318	+	1	NA	NA	NA	79	NM_001164528	100039795	Mm.101743	NM_001164528	ENSMUSG00000040612	Ildr2	2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|ENSMUSG00000040612|Ll	immunoglobulin-like domain containing receptor 2	protein-coding	0.175000	0.825871	
mm_28.1	chr1	6214694	6214894	+	1	NA	NA	NA	132	NM_009826	12421	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	0.155000	0.781095	
mm_8888.1	chr1	162886401	162886601	-	1	NA	NA	NA	12211	NM_018881	55990	Mm.10929	NM_018881	ENSMUSG00000040170	Fmo2	2310008D08Rik|2310042I22Rik|AW107733	flavin containing monooxygenase 2	protein-coding	0.020000	0.388060	
mm_54071.1	chr6	14754976	14755176	-	1	NA	NA	NA	198	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	0.025000	0.512438	
mm_59905.1	chr7	30322462	30322662	+	1	NA	NA	NA	-187	NM_001033140	68332	Mm.6844	NM_001033140	ENSMUSG00000074211	Sdhaf1	0610010E21Rik|AI430885|AW490662|Lyrm8	succinate dehydrogenase complex assembly factor 1	protein-coding	0.020000	0.517413	-30(CACTCTAAAGAG,-,0.00)
mm_162339.1	chr1	46852689	46852889	-	1	NA	NA	NA	720	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.090000	0.646766	
mm_165442.1	chr2	154580638	154580838	+	1	NA	NA	NA	-10846	NM_007891	13555	Mm.18036	NM_007891	ENSMUSG00000027490	E2f1	E2F-1|mKIAA4009	E2F transcription factor 1	protein-coding	0.015000	0.532338	
mm_160395.1	chr8	66687917	66688117	-	1	NA	NA	NA	77	NM_016708	18168	Mm.10685	NM_016708	ENSMUSG00000044014	Npy5r	NPY5-R|NPYY5-R|Y5R	neuropeptide Y receptor Y5	protein-coding	0.080000	0.691542	
mm_76182.1	chr8	82402278	82402478	-	1	NA	NA	NA	208	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.035000	0.572139	
mm_10313.1	chr2	11172240	11172440	+	1	NA	NA	NA	-42	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.115000	0.731343	
mm_99439.1	chr11	102432914	102433114	+	1	NA	NA	NA	2692	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.015000	0.577114	
mm_93261.1	chr10	95564010	95564210	-	1	NA	NA	NA	57	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.185000	0.776119	-68(CCGCTTAAATGC,-,0.00),-66(GCTTAAATGCGG,+,0.00)
mm_143842.1	chr17	84126207	84126407	-	1	NA	NA	NA	47647	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.010000	0.542289	
mm_154585.1	chrX	7572644	7572844	+	1	NA	NA	NA	-856	NR_029473	78185	Mm.160055	NR_029473	ENSMUSG00000039545	Ppp1r3fos	4930524L23Rik	protein phosphatase 1, regulatory subunit 3F, opposite strand	ncRNA	0.025000	0.512438	
mm_5537.1	chr1	38120947	38121147	-	1	NA	NA	NA	8615	NM_019570	56210	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	0.020000	0.417910	
mm_128414.1	chr15	44752110	44752310	-	1	NA	NA	NA	248	NM_178765	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding	0.035000	0.517413	
mm_32701.1	chr4	116075301	116075501	+	1	NA	NA	NA	132	NM_153521	230654	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	0.095000	0.641791	-63(GGTCCTAAAAGC,-,0.00)
mm_42778.1	chr5	121385417	121385617	+	1	NA	NA	NA	98	NM_001163470	231712	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.155000	0.815920	
mm_109114.1	chr12	105488557	105488757	+	1	NA	NA	NA	-24776	NR_102381	104932	Mm.274150	NR_102381		AU015791	-	expressed sequence AU015791	ncRNA	0.015000	0.537313	
mm_13802.1	chr2	119008041	119008241	+	1	NA	NA	NA	21252	NM_199310	269336	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	0.025000	0.442786	
mm_924.1	chr1	55147531	55147731	+	1	NA	NA	NA	16386	NM_025283	19070	Mm.291037	NM_025283	ENSMUSG00000025979	Mob4	2610109B12Rik|Mobkl3|Phocn|Prei3	MOB family member 4, phocein	protein-coding	0.000000	0.378109	
mm_38893.1	chr4	149774123	149774323	-	1	NA	NA	NA	44	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.180000	0.791045	
mm_33869.1	chr4	135963651	135963851	+	1	NA	NA	NA	-1414	NM_178389	74246	Mm.247946	NM_178389	ENSMUSG00000028671	Gale	2310002A12Rik|AI323962	galactose-4-epimerase, UDP	protein-coding	0.085000	0.666667	-31(AGGTCTTAAAGG,-,0.00),-30(GGTCTTAAAGGG,-,0.00),-28(TCTTAAAGGGGC,+,0.00)
mm_79060.1	chr9	46230138	46230338	+	1	NA	NA	NA	1608	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.055000	0.606965	
mm_127387.1	chr15	101040944	101041144	+	1	NA	NA	NA	13355	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.015000	0.373134	27(CACTTTAAAAGT,-,0.00)
mm_35901.1	chr4	49597643	49597843	-	1	NA	NA	NA	127	NM_025944	67063	Mm.490285	NM_025944	ENSMUSG00000039611	Tmem246	2810432L12Rik|9330170P15Rik|AI835809	transmembrane protein 246	protein-coding	0.075000	0.691542	
mm_46275.1	chr5	100038780	100038980	-	1	NA	NA	NA	342	NM_016690	50926	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	0.120000	0.686567	-64(GGCTATAAAGGG,-,0.00)
mm_149455.1	chr19	11516350	11516550	+	1	NA	NA	NA	-2109	NM_027209	69774	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	0.000000	0.487562	
mm_17900.1	chr2	35181599	35181799	-	1	NA	NA	NA	19421	NM_026697	68365	Mm.198264	NM_026697	ENSMUSG00000026878	Rab14	0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik	RAB14, member RAS oncogene family	protein-coding	0.000000	0.293532	
mm_47334.1	chr5	122501158	122501358	-	1	NA	NA	NA	967	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.045000	0.606965	
mm_108932.1	chr12	101083719	101083919	+	1	NA	NA	NA	-117	NM_001160214	68734	Mm.87077	NM_211355	ENSMUSG00000041846	Smek1	1110034C04Rik|BC064465|Ppp4r3a|mKIAA2010	SMEK homolog 1, suppressor of mek1 (Dictyostelium)	protein-coding	0.085000	0.666667	
mm_145006.1	chr18	38419393	38419593	+	1	NA	NA	NA	518	NM_022996	65113	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.050000	0.482587	
mm_141016.1	chr17	25081070	25081270	-	1	NA	NA	NA	-56	NM_001001183	407831	Mm.34379	NM_001001183	ENSMUSG00000024168	Tmem204	-	transmembrane protein 204	protein-coding	0.030000	0.527363	56(GCTTTTCAGGAC,+,0.00)
mm_140405.1	chr17	87641353	87641553	+	1	NA	NA	NA	5474	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.015000	0.417910	
mm_68359.1	chr7	106511481	106511681	-	1	NA	NA	NA	-70508	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.467662	
mm_98464.1	chr11	94948454	94948654	+	1	NA	NA	NA	12330	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.015000	0.621891	
mm_80776.1	chr9	95564370	95564570	+	1	NA	NA	NA	4653	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.005000	0.427861	-100(CTTTATATATGG,+,0.00),63(TGCTTTTTAAGG,-,0.00),65(CTTTTTAAGGGT,+,0.00)
mm_24739.1	chr3	95283301	95283501	+	1	NA	NA	NA	466	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.100000	0.676617	
mm_44684.1	chr5	30120132	30120332	-	1	NA	NA	NA	-14146	NM_001256263	433868	Mm.450696	NM_001256263	ENSMUSG00000086815	3110082J24Rik	ENSMUSG00000073106	RIKEN cDNA 3110082J24 gene	protein-coding	0.030000	0.537313	
mm_89960.1	chr10	111296208	111296408	+	1	NA	NA	NA	-2371	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.030000	0.323383	
mm_105569.1	chr11	106579026	106579226	-	1	NA	NA	NA	33804	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.005000	0.482587	
mm_115132.1	chr13	104296366	104296566	+	1	NA	NA	NA	8631	NM_001081020	108154	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.005000	0.338308	
mm_151167.1	chr19	53197904	53198104	+	1	NA	NA	NA	54007	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.010000	0.482587	
mm_22196.1	chr2	173291053	173291253	-	1	NA	NA	NA	-14620	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.030000	0.542289	
mm_60441.1	chr7	44476935	44477135	+	1	NA	NA	NA	6688	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.388060	
mm_64633.1	chr7	3703816	3704016	-	1	NA	NA	NA	-125	NM_029767	76846	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	0.080000	0.547264	39(GGCGATTAAAGG,-,0.00)
mm_6803.1	chr1	84154661	84154861	-	1	NA	NA	NA	64200	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.015000	0.402985	
mm_150680.1	chr19	42052891	42053091	+	1	NA	NA	NA	763	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	0.015000	0.507463	
mm_45654.1	chr5	77095113	77095313	-	1	NA	NA	NA	54	NM_001159901	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.070000	0.661692	
mm_126611.1	chr15	83033292	83033492	+	1	NA	NA	NA	5	NM_001271412	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.010000	0.552239	
mm_137095.1	chr17	21535511	21535711	+	1	NA	NA	NA	72	NM_144515	22710	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	0.025000	0.547264	
mm_151331.1	chr19	55894374	55894574	+	1	NA	NA	NA	-847	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.015000	0.417910	70(GGCTTTTAAAGT,-,0.00),71(GCTTTTAAAGTC,+,0.00)
mm_56181.1	chr6	88268740	88268940	-	1	NA	NA	NA	46572	NM_019964	56691	Mm.272871	NM_019964	ENSMUSG00000048206	Dnajb8	1700016F14Rik|1700031F10Rik|AI326313|mDj6	DnaJ heat shock protein family (Hsp40) member B8	protein-coding	0.000000	0.477612	
mm_56522.1	chr6	99520890	99521090	-	1	NA	NA	NA	3	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.045000	0.567164	
mm_120224.1	chr14	62857087	62857287	+	1	NA	NA	NA	-8355	NR_105860	102465311		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.010000	0.537313	
mm_109878.1	chr12	4918073	4918273	-	1	NA	NA	NA	820	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.030000	0.507463	
mm_15780.1	chr2	164333401	164333601	+	1	NA	NA	NA	736	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.040000	0.467662	60(CCTTTAAAACCA,+,0.00)
mm_115510.1	chr13	4523239	4523439	-	1	NA	NA	NA	5	NM_001311132	116852	Mm.37605	NM_054080	ENSMUSG00000054757	Akr1c20	2610528B18Rik	aldo-keto reductase family 1, member C20	protein-coding	0.005000	0.437811	
mm_172698.1	chr8	63933171	63933371	-	1	NA	NA	NA	18899	NM_001195687	244495	Mm.485331	NM_001195687	ENSMUSG00000094443	Sgol2b	EG244495|Gm4975|Sgo2B	shugoshin like 2b (S. pombe)	protein-coding	0.030000	0.582090	
mm_48929.1	chr6	4528278	4528478	+	1	NA	NA	NA	22760	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.015000	0.542289	
mm_81219.1	chr9	107590835	107591035	+	1	NA	NA	NA	3217	NM_025903	15983	Mm.215335	NM_025903	ENSMUSG00000010048	Ifrd2	1810034A24Rik|AA470234|AI838527|SKMc15	interferon-related developmental regulator 2	protein-coding	0.030000	0.582090	
mm_74051.1	chr8	122282029	122282229	+	1	NA	NA	NA	-12	NM_009569	22761	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.170000	0.786070	
mm_170122.1	chr17	39846819	39847019	+	1	NA	NA	NA	3922	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.050000	0.497512	
mm_47985.1	chr5	135933603	135933803	-	1	NA	NA	NA	938	NM_018871	22628	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.010000	0.373134	88(CTCTATATAGCA,+,0.00)
mm_116472.1	chr13	43481173	43481373	-	1	NA	NA	NA	-300	NM_019930	56705	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.200000	0.825871	
mm_145457.1	chr18	60235713	60235913	+	1	NA	NA	NA	23736	NM_001033767	240327	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.000000	0.373134	
mm_44860.1	chr5	34288245	34288445	-	1	NA	NA	NA	-21	NM_001015039	231125	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.160000	0.741294	
mm_1459.1	chr1	67230823	67231023	+	1	NA	NA	NA	107896	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.000000	0.343284	-93(ACTTATATAGTC,+,0.00)
mm_157726.1	chrX	70364833	70365033	-	1	NA	NA	NA	152	NM_010498	15931	Mm.233083	NM_010498	ENSMUSG00000035847	Ids	AW214631	iduronate 2-sulfatase	protein-coding	0.110000	0.651741	
mm_149833.1	chr19	24875530	24875730	+	1	NA	NA	NA	-13788	NM_175013	226041	Mm.105222	NM_175013	ENSMUSG00000041731	Pgm5	4833423B07|9530034F03Rik|D830025G17|aciculin	phosphoglucomutase 5	protein-coding	0.070000	0.517413	
mm_81828.1	chr9	118054850	118055050	+	1	NA	NA	NA	14428	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.005000	0.328358	-54(TCTTTTATAGGT,+,0.00)
mm_145676.1	chr18	61566043	61566243	+	1	NA	NA	NA	10561	NM_146087	93687	Mm.26908	NM_146087	ENSMUSG00000024576	Csnk1a1	2610208K14Rik|4632404G05Rik|5430427P18Rik|CK1a|Csnk1a	casein kinase 1, alpha 1	protein-coding	0.005000	0.358209	
mm_67933.1	chr7	99980354	99980554	-	1	NA	NA	NA	4	NM_175388	108937	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.105000	0.686567	
mm_46025.1	chr5	91282951	91283151	-	1	NA	NA	NA	25	NR_040428	100503265	Mm.125059	NR_040428	ENSMUSG00000107198	Gm19619	-	predicted gene, 19619	ncRNA	0.005000	0.497512	
mm_171896.1	chr5	39798316	39798516	+	1	NA	NA	NA	-153785	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.010000	0.412935	
mm_22304.1	chr2	180381106	180381306	-	1	NA	NA	NA	-4398	NR_045331	622283	Mm.447602	NR_045331		Mir1a-1hg	EG622283|Gm6307	Mir1a-1 and Mir133a-2 host gene	ncRNA	0.005000	0.557214	
mm_67169.1	chr7	73556598	73556798	-	1	NA	NA	NA	1697	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.015000	0.338308	-31(CCTTTTATGGGG,+,0.00),83(TGGTTTTAAAGC,-,0.00)
mm_20529.1	chr2	131012271	131012471	-	1	NA	NA	NA	28027	NR_105969	102465606		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	0.000000	0.318408	-80(CTTTTTATAGCT,+,0.00)
mm_57890.1	chr6	131368330	131368530	-	1	NA	NA	NA	20020	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.055000	0.532338	
mm_141018.1	chr17	25115826	25116026	-	1	NA	NA	NA	-21	NM_027880	71718	Mm.288702	NM_027880	ENSMUSG00000024170	Telo2	1200003M09Rik|AI415602|Tel2|mKIAA0683	telomere maintenance 2	protein-coding	0.085000	0.592040	
mm_75233.1	chr8	39629252	39629452	-	1	NA	NA	NA	13326	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.005000	0.402985	
mm_75817.1	chr8	70382422	70382622	-	1	NA	NA	NA	8974	NM_016685	12845	Mm.45071	NM_016685	ENSMUSG00000031849	Comp	TSP5	cartilage oligomeric matrix protein	protein-coding	0.065000	0.656716	
mm_119025.1	chr14	30010233	30010433	+	1	NA	NA	NA	1333	NM_001136240	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.015000	0.527363	
mm_84841.1	chr9	78378084	78378284	-	1	NA	NA	NA	404	NM_026480	67968	Mm.26883	NM_026480	ENSMUSG00000032346	Ooep	2410146L05Rik|Floped|Moep19|Sddr	oocyte expressed protein	protein-coding	0.025000	0.527363	
mm_127179.1	chr15	98983595	98983795	+	1	NA	NA	NA	-2270	NR_045991	75951	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.030000	0.507463	
mm_46856.1	chr5	113745093	113745293	-	1	NA	NA	NA	9411	NM_001010825	231630	Mm.21926	NM_001010825	ENSMUSG00000053334	Ficd	D5Ertd40e|Hype	FIC domain containing	protein-coding	0.030000	0.567164	
mm_107453.1	chr12	37108440	37108640	+	1	NA	NA	NA	-6	NM_008584	17286	Mm.341398	NM_008584	ENSMUSG00000036144	Meox2	AI528662|Gax|Mox-2|Mox2	mesenchyme homeobox 2	protein-coding	0.010000	0.517413	
mm_143841.1	chr17	84126165	84126365	-	1	NA	NA	NA	47605	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.010000	0.537313	
mm_102051.1	chr11	52098424	52098624	-	1	NA	NA	NA	-300	NM_019411	19052	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.060000	0.592040	
mm_108710.1	chr12	87026390	87026590	+	1	NA	NA	NA	-74	NM_172583	217733	Mm.110032	NM_172583	ENSMUSG00000034145	Tmem63c	4932420N09|9330187M14Rik	transmembrane protein 63c	protein-coding	0.045000	0.626866	-98(GCTTATCTAGCC,+,0.00)
mm_166700.1	chr6	114880440	114880640	+	1	NA	NA	NA	41212	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.005000	0.567164	
mm_101314.1	chr11	22813971	22814171	-	1	NA	NA	NA	45664	NM_016888	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.015000	0.497512	
mm_147056.1	chr18	34941811	34942011	-	1	NA	NA	NA	-9908	NM_144866	225363	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.015000	0.482587	
mm_102870.1	chr11	69407722	69407922	-	1	NA	NA	NA	5853	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.015000	0.537313	
mm_85933.1	chr9	112097650	112097850	-	1	NA	NA	NA	20961	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.000000	0.482587	
mm_155755.1	chrX	96167409	96167609	+	1	NA	NA	NA	71464	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.000000	0.447761	
mm_128551.1	chr15	55638602	55638802	-	1	NA	NA	NA	81294	NM_001168250	105837	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0.005000	0.412935	
mm_156568.1	chrX	151909451	151909651	+	1	NA	NA	NA	-2795	NR_029732	387253		NR_029732	ENSMUSG00000065602	Mirlet7f-2	Mirlet7f2|Mirnlet7f2|let-7f-2	microRNA let7f-2	ncRNA	0.030000	0.497512	
mm_116377.1	chr13	40984695	40984895	-	1	NA	NA	NA	-16215	NM_026550	68083	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0.020000	0.502488	
mm_152097.1	chr19	6909875	6910075	-	1	NA	NA	NA	277	NM_026306	67674	Mm.318804	NM_026306	ENSMUSG00000038812	Trmt112	0610038D11Rik|Trm112p	tRNA methyltransferase 11-2	protein-coding	0.085000	0.567164	
mm_42904.1	chr5	122501487	122501687	+	1	NA	NA	NA	638	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.090000	0.676617	
mm_43810.1	chr5	142904360	142904560	+	1	NA	NA	NA	2294	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.045000	0.557214	
mm_24550.1	chr3	93440663	93440863	+	1	NA	NA	NA	-1567	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.005000	0.457711	-32(CCCTATAAAAGG,-,0.00)
mm_93473.1	chr10	111507227	111507427	-	1	NA	NA	NA	1041	NM_009344	21664	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0.030000	0.646766	
mm_39093.1	chr4	154871936	154872136	-	1	NA	NA	NA	2451	NM_013783	27390	Mm.116944	NM_013783	ENSMUSG00000058183	Mmel1	Mell1|NEP2|NEPII|Nl1|SEP	membrane metallo-endopeptidase-like 1	protein-coding	0.045000	0.666667	
mm_108833.1	chr12	95778982	95779182	+	1	NA	NA	NA	86856	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.025000	0.502488	
mm_96429.1	chr11	67278738	67278938	+	1	NA	NA	NA	1714	NM_177369	17885	Mm.340163	NM_177369	ENSMUSG00000055775	Myh8	4832426G23Rik|AI327267|MHCp|MyHC-pn|Myhs-p|Myhsp	myosin, heavy polypeptide 8, skeletal muscle, perinatal	protein-coding	0.040000	0.502488	
mm_170167.1	chr1	75431461	75431661	+	1	NA	NA	NA	-4382	NM_133708	69080	Mm.23951	NM_133708	ENSMUSG00000033021	Gmppa	1810012N01Rik	GDP-mannose pyrophosphorylase A	protein-coding	0.035000	0.616915	
mm_69309.1	chr7	128412201	128412401	-	1	NA	NA	NA	5871	NM_026418	67865	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.015000	0.507463	
mm_13210.1	chr2	94406686	94406886	+	1	NA	NA	NA	79	NR_027831	66457	Mm.402557	NR_027831		2810002D19Rik	-	RIKEN cDNA 2810002D19 gene	ncRNA	0.080000	0.606965	
mm_61594.1	chr7	80025842	80026042	+	1	NA	NA	NA	-286	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.030000	0.452736	-3(CCTTTTAGAGAA,+,0.00)
mm_3384.1	chr1	139501609	139501809	+	1	NA	NA	NA	2	NM_031164	14060	Mm.30105	NM_031164	ENSMUSG00000026368	F13b	Cf-13b|Cf13b	coagulation factor XIII, beta subunit	protein-coding	0.010000	0.358209	
mm_24352.1	chr3	90000741	90000941	+	1	NA	NA	NA	2081	NR_045749	100503469	Mm.440636	NR_045749	ENSMUSG00000105552	Gm19710	-	predicted gene, 19710	ncRNA	0.015000	0.562189	
mm_161926.1	chr18	77282012	77282212	+	1	NA	NA	NA	154	NM_172834	240411	Mm.380247	NM_172834	ENSMUSG00000032818	Loxhd1	1700096C21Rik|4932417K07|sba	lipoxygenase homology domains 1	protein-coding	0.085000	0.636816	
mm_85081.1	chr9	91365048	91365248	-	1	NA	NA	NA	651	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.070000	0.686567	
mm_140426.1	chr17	88000690	88000890	+	1	NA	NA	NA	25740	NM_010830	17688	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.015000	0.353234	-4(CCTTCTATAAGG,-,0.00)
mm_32259.1	chr4	102572728	102572928	+	1	NA	NA	NA	2768	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.005000	0.462687	
mm_163764.1	chr13	120015494	120015694	+	1	NA	NA	NA	36610	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.040000	0.547264	
mm_121964.1	chr14	25461033	25461233	-	1	NA	NA	NA	1948	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.070000	0.661692	
mm_146171.1	chr18	75366556	75366756	+	1	NA	NA	NA	-709	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.100000	0.701493	
mm_154814.1	chrX	13662237	13662437	+	1	NA	NA	NA	974	NM_175669	319200	Mm.383294	NM_175669	ENSMUSG00000047678	Gpr82	-	G protein-coupled receptor 82	protein-coding	0.000000	0.398010	
mm_7406.1	chr1	119053601	119053801	-	1	NA	NA	NA	-82	NM_001081125	14633	Mm.273292	NM_001081125	ENSMUSG00000048402	Gli2	-	GLI-Kruppel family member GLI2	protein-coding	0.105000	0.641791	
mm_10661.1	chr2	20737214	20737414	+	1	NA	NA	NA	217801	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.025000	0.467662	
mm_136298.1	chr16	91533501	91533701	-	1	NA	NA	NA	-13493	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.030000	0.567164	-35(CCTTATAAATGA,+,0.00)
mm_42011.1	chr5	108066280	108066480	+	1	NA	NA	NA	706	NM_013827	17765	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0.025000	0.567164	
mm_74282.1	chr8	125584551	125584751	+	1	NA	NA	NA	13	NR_015535	75930	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	0.020000	0.537313	
mm_151337.1	chr19	55895050	55895250	+	1	NA	NA	NA	-171	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.020000	0.398010	36(AGCTATTAAAGC,-,0.00)
mm_114895.1	chr13	94390595	94390795	+	1	NA	NA	NA	31735	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.010000	0.432836	
mm_172273.1	chr6	85106341	85106541	+	1	NA	NA	NA	19653	NM_001034902	545861	Mm.321419	NM_001034902	ENSMUSG00000072952	Gm5878	EG545861	predicted gene 5878	protein-coding	0.000000	0.303483	-59(GCCTTTTTAAGT,-,0.00)
mm_49018.1	chr6	4758803	4759003	+	1	NA	NA	NA	11597	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.015000	0.437811	
mm_99566.1	chr11	103810128	103810328	+	1	NA	NA	NA	36053	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding	0.130000	0.771144	
mm_19904.1	chr2	114150409	114150609	-	1	NA	NA	NA	61	NR_105968	102465982		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	0.040000	0.547264	
mm_52998.1	chr6	123268136	123268336	+	1	NA	NA	NA	6129	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.010000	0.402985	
mm_82015.1	chr9	121719337	121719537	+	1	NA	NA	NA	256	NM_010918	18087	Mm.32842	NM_010918	ENSMUSG00000032525	Nktr	5330401F18Rik|D9Wsu172e	natural killer tumor recognition sequence	protein-coding	0.150000	0.796020	
mm_146068.1	chr18	70472467	70472667	+	1	NA	NA	NA	-5	NM_001289648	170461	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	0.080000	0.641791	
mm_122302.1	chr14	34674171	34674371	-	1	NA	NA	NA	343	NM_001301330	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.135000	0.741294	
mm_62995.1	chr7	120677505	120677705	+	1	NA	NA	NA	-15	NM_001164580	233812	Mm.276479	NM_001164580	ENSMUSG00000046096	BC030336	-	cDNA sequence BC030336	protein-coding	0.185000	0.855721	
mm_171040.1	chr2	9676586	9676786	+	1	NA	NA	NA	201914	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.005000	0.363184	
mm_136355.1	chr16	92739399	92739599	-	1	NA	NA	NA	-42170	NM_009821	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.000000	0.273632	
mm_167617.1	chr9	57261784	57261984	-	1	NA	NA	NA	715	NM_028820	74211	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.055000	0.631841	
mm_64085.1	chr7	140954902	140955102	+	1	NA	NA	NA	959	NM_030694	80876	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.030000	0.527363	
mm_83046.1	chr9	37489741	37489941	-	1	NA	NA	NA	520	NM_146222	235184	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	0.120000	0.781095	
mm_172395.1	chr7	140955837	140956037	-	1	NA	NA	NA	24	NM_030694	80876	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.025000	0.522388	
mm_153998.1	chr19	50713542	50713742	-	1	NA	NA	NA	-34996	NM_001290356	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.020000	0.432836	
mm_79511.1	chr9	57504481	57504681	+	1	NA	NA	NA	479	NM_133982	102614	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	0.100000	0.641791	
mm_77742.1	chr8	126970969	126971169	-	1	NA	NA	NA	10	NM_172762	52202	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	0.080000	0.621891	
mm_16769.1	chr2	9879443	9879643	-	1	NA	NA	NA	-943	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.040000	0.592040	
mm_149292.1	chr19	10688632	10688832	+	1	NA	NA	NA	-83	NM_181403	107305	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.095000	0.681592	
mm_3805.1	chr1	158362086	158362286	+	1	NA	NA	NA	-118	NM_007495	11899	Mm.329586	NM_007495	ENSMUSG00000026587	Astn1	Astn|GC14|mKIAA0289	astrotactin 1	protein-coding	0.010000	0.507463	
mm_7459.1	chr1	120447380	120447580	-	1	NA	NA	NA	57604	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.010000	0.552239	
mm_119309.1	chr14	35247324	35247524	+	1	NA	NA	NA	352815	NR_029774	723847		NR_029774	ENSMUSG00000065481	Mir346	Mirn346|mir-346|mmu-mir-346	microRNA 346	ncRNA	0.005000	0.487562	
mm_136063.1	chr16	84704805	84705005	-	1	NA	NA	NA	-8118	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.010000	0.442786	
mm_111359.1	chr12	86990479	86990679	-	1	NA	NA	NA	-1903	NM_001080943	238331	Mm.185890	NM_001080943	ENSMUSG00000048483	Zdhhc22	Gm262	zinc finger, DHHC-type containing 22	protein-coding	0.060000	0.731343	
mm_25664.1	chr3	121734524	121734724	+	1	NA	NA	NA	11087	NM_010171	14066	Mm.273188	NM_010171	ENSMUSG00000028128	F3	AA409063|CD142|Cf-3|Cf3|TF	coagulation factor III	protein-coding	0.020000	0.402985	20(TTTTATAAAGCG,+,0.00)
mm_75249.1	chr8	40307817	40308017	-	1	NA	NA	NA	12	NR_106126	102466237		NR_106126	ENSMUSG00000098431	Mir7666	Gm27915|mmu-mir-7666	microRNA 7666	ncRNA	0.110000	0.701493	
mm_137298.1	chr17	24840016	24840216	+	1	NA	NA	NA	10186	NM_023480	68636	Mm.347964	NM_023480	ENSMUSG00000045316	Fahd1	1110025H10Rik|AV002085	fumarylacetoacetate hydrolase domain containing 1	protein-coding	0.020000	0.537313	
mm_22895.1	chr3	30792990	30793190	+	1	NA	NA	NA	214	NM_027016	69276	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	0.120000	0.711443	
mm_152334.1	chr19	9977649	9977849	-	1	NA	NA	NA	-2851	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.000000	0.298507	-35(GACTATTAAAGG,-,0.00)
mm_4413.1	chr1	172499764	172499964	+	1	NA	NA	NA	-382	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.025000	0.502488	
mm_150053.1	chr19	29381233	29381433	+	1	NA	NA	NA	13895	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.422886	
mm_37219.1	chr4	117914945	117915145	-	1	NA	NA	NA	-46	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	0.105000	0.716418	
mm_74596.1	chr8	11634966	11635166	-	1	NA	NA	NA	-30	NR_030781	102334	Mm.12459	NM_133971	ENSMUSG00000031508	Ankrd10	4833425P12Rik|AW549277	ankyrin repeat domain 10	protein-coding	0.115000	0.716418	
mm_152207.1	chr19	7711188	7711388	-	1	NA	NA	NA	22	NM_144785	207151	Mm.21365	NM_144785	ENSMUSG00000024757	Slc22a19	D630043A20Rik|OAT-5|Oat5|Slc22a9	solute carrier family 22 (organic anion transporter), member 19	protein-coding	0.000000	0.407960	
mm_102311.1	chr11	55608546	55608746	-	1	NA	NA	NA	-448	NM_020492	14654	Mm.89320	NM_020492	ENSMUSG00000000263	Glra1	nmf11|oscillator|ot|spasmodic|spd	glycine receptor, alpha 1 subunit	protein-coding	0.040000	0.527363	
mm_66201.1	chr7	34230338	34230538	-	1	NA	NA	NA	-102	NM_008155	14751	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	0.070000	0.631841	
mm_154394.1	chrM	13225	13425	+	1	NA	NA	NA	NA	NA									0.010000	0.348259	
mm_32904.1	chr4	119108647	119108847	+	1	NA	NA	NA	2	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.070000	0.666667	23(TCCTATAAAAAG,-,0.00)
mm_117848.1	chr13	98694799	98694999	-	1	NA	NA	NA	-68	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.100000	0.761194	
mm_67365.1	chr7	79839141	79839341	-	1	NA	NA	NA	3111	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.025000	0.587065	
mm_20725.1	chr2	136387900	136388100	-	1	NA	NA	NA	-33	NM_172858	241656	Mm.131572	NM_172858	ENSMUSG00000039913	Pak7	2900083L08Rik|6430627N20|Pak5	p21 protein (Cdc42/Rac)-activated kinase 7	protein-coding	0.040000	0.601990	
mm_74911.1	chr8	25256312	25256512	-	1	NA	NA	NA	49858	NR_040352	74489	Mm.256468	NR_040352	ENSMUSG00000110140	5430421F17Rik	-	RIKEN cDNA 5430421F17 gene	ncRNA	0.060000	0.611940	
mm_117316.1	chr13	67637634	67637834	-	1	NA	NA	NA	19	NM_183146	212281	Mm.342918	NM_183146	ENSMUSG00000021510	Zfp729a	A530054K11Rik|Rslcan3	zinc finger protein 729a	protein-coding	0.030000	0.507463	
mm_91478.1	chr10	34233466	34233666	-	1	NA	NA	NA	-26015	NM_172508	212898	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.005000	0.512438	
mm_145633.1	chr18	61111864	61112064	+	1	NA	NA	NA	-5504	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.040000	0.577114	
mm_31633.1	chr4	59337898	59338098	+	1	NA	NA	NA	77947	NR_105031	101055769	Mm.421401	NR_105031		Gm12596	OTTMUSG00000007649	predicted gene 12596	ncRNA	0.010000	0.412935	
mm_157451.1	chrX	42149250	42149450	-	1	NA	NA	NA	-62	NM_001077712	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.070000	0.402985	
mm_62788.1	chr7	112679250	112679450	+	1	NA	NA	NA	30	NM_009346	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.165000	0.761194	
mm_170823.1	chr2	176670465	176670665	+	1	NA	NA	NA	43	NM_001242943	545490	Mm.484023	NM_001242943	ENSMUSG00000078879	Zfp973	6230416C02Rik|Gm14306|Gm14436|OTTMUSG00000016614	zinc finger protein 973	protein-coding	0.015000	0.487562	
mm_6299.1	chr1	71102840	71103040	-	1	NA	NA	NA	32	NM_007525	12021	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	ENSMUSG00000060893|ENSMUSG00000073653	BRCA1 associated RING domain 1	protein-coding	0.095000	0.631841	
mm_67696.1	chr7	89518081	89518281	-	1	NA	NA	NA	-595	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.030000	0.611940	
mm_60508.1	chr7	44479466	44479666	+	1	NA	NA	NA	-4951	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.442786	
mm_95661.1	chr11	53771280	53771480	+	1	NA	NA	NA	907	NM_001159396	16362	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.025000	0.462687	
mm_9113.1	chr1	170174722	170174922	-	1	NA	NA	NA	142	NM_001305046	107652	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.145000	0.766169	
mm_50900.1	chr6	57581032	57581232	+	1	NA	NA	NA	140	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.045000	0.616915	
mm_167884.1	chrX	53039766	53039966	+	1	NA	NA	NA	8212	NR_030498	751532		NR_030498	ENSMUSG00000076050	Mir450b	Mirn450b|mir-450b	microRNA 450b	ncRNA	0.015000	0.442786	
mm_153951.1	chr19	47681393	47681593	-	1	NA	NA	NA	10549	NM_007732	12821	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	0.045000	0.572139	
mm_88503.1	chr10	77861854	77862054	+	1	NA	NA	NA	-21	NM_001101631	100041351	Mm.441672	NM_001101631		Gm3285	-	predicted gene 3285	protein-coding	0.030000	0.512438	-33(TGGTATAAAAGC,-,0.00)
mm_22599.1	chr3	14480600	14480800	+	1	NA	NA	NA	1	NM_080852	140918	Mm.215250	NM_080852	ENSMUSG00000039710	Slc7a12	Asc-2|XAT1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 12	protein-coding	0.000000	0.318408	
mm_134610.1	chr16	20730468	20730668	-	1	NA	NA	NA	30	NM_001289896	21832	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.010000	0.611940	
mm_72006.1	chr8	70698838	70699038	+	1	NA	NA	NA	1199	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.145000	0.761194	-33(GGCTATAAGAGT,-,0.00)
mm_172059.1	chr6	132521403	132521603	-	1	NA	NA	NA	-48339	NM_011174	19131	Mm.425348	NM_011174	ENSMUSG00000059934	Prh1	MP2|Prp	proline rich protein HaeIII subfamily 1	protein-coding	0.050000	0.532338	
mm_87024.1	chr10	28185235	28185435	+	1	NA	NA	NA	110515	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0.010000	0.338308	
mm_142939.1	chr17	56017349	56017549	-	1	NA	NA	NA	8248	NM_026530	68047	Mm.358710	NM_026530	ENSMUSG00000003199	Mpnd	E130307M08Rik	MPN domain containing	protein-coding	0.010000	0.577114	
mm_105403.1	chr11	103443747	103443947	-	1	NA	NA	NA	-31183	NM_183034	353047	Mm.18556	NM_183034	ENSMUSG00000034247	Plekhm1	AP162|B2|BC038943|D330036J23Rik	pleckstrin homology domain containing, family M (with RUN domain) member 1	protein-coding	0.015000	0.492537	
mm_141795.1	chr17	34343624	34343824	-	1	NA	NA	NA	921	NM_010381	100504404	Mm.15680	NM_010381		H2-Ea-ps	AI323765|E-alpha-f|H-2Ea|H2-Ea|I-Ealpha|Ia-3|Ia3|MHC-H2-Ea	histocompatibility 2, class II antigen E alpha, pseudogene	protein-coding	0.045000	0.567164	
mm_53996.1	chr6	6881984	6882184	-	1	NA	NA	NA	-16	NM_010056	13395	Mm.4873	NM_010056	ENSMUSG00000029755	Dlx5	AI385752	distal-less homeobox 5	protein-coding	0.070000	0.661692	
mm_8454.1	chr1	153129987	153130187	-	1	NA	NA	NA	56360	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.020000	0.437811	
mm_4190.1	chr1	171213929	171214129	+	1	NA	NA	NA	59	NM_001243063	12355	Mm.486506	NM_009803	ENSMUSG00000005677	Nr1i3	AA209988|AI551208|CAR|CAR-beta|Care2|ESTM32|MB67	nuclear receptor subfamily 1, group I, member 3	protein-coding	0.015000	0.597015	
mm_54875.1	chr6	42644951	42645151	-	1	NA	NA	NA	-10	NM_146174	232748	Mm.279659	NM_146174	ENSMUSG00000029851	Tcaf2	Fam115c	TRPM8 channel-associated factor 2	protein-coding	0.050000	0.577114	
mm_104054.1	chr11	86484231	86484431	-	1	NA	NA	NA	-326	NM_029788	76892	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0.080000	0.567164	
mm_25273.1	chr3	104908501	104908701	+	1	NA	NA	NA	44095	NM_153091	229681	Mm.206379	NM_153091	ENSMUSG00000045576	St7l	St7r	suppression of tumorigenicity 7-like	protein-coding	0.000000	0.238806	
mm_114532.1	chr13	73604041	73604241	+	1	NA	NA	NA	139	NM_146047	218335	Mm.30099	NM_146047	ENSMUSG00000021610	Clptm1l	C130052I12Rik|Crr9	CLPTM1-like	protein-coding	0.175000	0.781095	
mm_63135.1	chr7	123031269	123031469	+	1	NA	NA	NA	60805	NM_175023	19647	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6	protein-coding	0.040000	0.517413	
mm_124158.1	chr14	93471931	93472131	-	1	NA	NA	NA	416857	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.010000	0.353234	
mm_101225.1	chr11	20202374	20202574	-	1	NA	NA	NA	872	NM_008996	19324	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0.005000	0.388060	
mm_12156.1	chr2	62046487	62046687	+	1	NA	NA	NA	72	NM_033552	94229	Mm.314497	NM_033552	ENSMUSG00000026904	Slc4a10	NCBE|mKIAA4136	solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	protein-coding	0.020000	0.527363	
mm_122356.1	chr14	39001638	39001838	-	1	NA	NA	NA	103436	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA	0.005000	0.298507	
mm_157006.1	chrX	7594958	7595158	-	1	NA	NA	NA	10362	NM_138603	54638	Mm.288192	NM_138603	ENSMUSG00000031143	Ccdc22	AI481216|DXImx40e|Ppp1r3f|Sfc22	coiled-coil domain containing 22	protein-coding	0.025000	0.487562	
mm_149838.1	chr19	24999428	24999628	+	1	NA	NA	NA	-1	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.155000	0.786070	
mm_46770.1	chr5	112276262	112276462	-	1	NA	NA	NA	-329	NM_001326590	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.070000	0.646766	
mm_49872.1	chr6	38567429	38567629	+	1	NA	NA	NA	11806	NM_001331223	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.005000	0.303483	
mm_100667.1	chr11	3332189	3332389	-	1	NA	NA	NA	1558	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.125000	0.721393	
mm_91583.1	chr10	40227742	40227942	-	1	NA	NA	NA	19137	NM_001042556	67239	Mm.11480	NM_023323	ENSMUSG00000038510	Rpf2	2810470K21Rik|AU040229|AU043242|Bxdc1	ribosome production factor 2 homolog	protein-coding	0.010000	0.502488	
mm_38115.1	chr4	134535287	134535487	-	1	NA	NA	NA	0	NM_029759	76824	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	0.095000	0.711443	
mm_108933.1	chr12	101169689	101169889	+	1	NA	NA	NA	24180	NR_033653	74947	Mm.488905	NR_033653	ENSMUSG00000092054	Kif4-ps	4930463M05Rik|Kif4b	kinesin family member 4, pseudogene	pseudo	0.005000	0.402985	
mm_94751.1	chr11	21116759	21116959	+	1	NA	NA	NA	25535	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.005000	0.452736	
mm_126356.1	chr15	79935865	79936065	+	1	NA	NA	NA	-3319	NM_144811	52609	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	0.015000	0.417910	
mm_38895.1	chr4	149850116	149850316	-	1	NA	NA	NA	-75949	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.020000	0.522388	
mm_110276.1	chr12	32057480	32057680	-	1	NA	NA	NA	3699	NM_011158	19088	Mm.25594	NM_011158	ENSMUSG00000002997	Prkar2b	AI451071|AW061005|PKARIIbeta|Pkarb2|RII(beta)	protein kinase, cAMP dependent regulatory, type II beta	protein-coding	0.000000	0.383085	18(TCCTATAAAGAC,+,0.00),18(TCCTATAAAGAC,-,0.00)
mm_17045.1	chr2	20943301	20943501	-	1	NA	NA	NA	24320	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.020000	0.557214	
mm_997.1	chr1	58713226	58713426	+	1	NA	NA	NA	40	NM_207653	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.050000	0.532338	
mm_30939.1	chr4	33031442	33031642	+	1	NA	NA	NA	117	NM_019586	56228	Mm.259095	NM_019586	ENSMUSG00000028277	Ube2j1	0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p	ubiquitin-conjugating enzyme E2J 1	protein-coding	0.160000	0.786070	
mm_45783.1	chr5	87336581	87336781	-	1	NA	NA	NA	514	NM_028094	72094	Mm.482739	NM_028094	ENSMUSG00000035780	Ugt2a3	2010321J07Rik	UDP glucuronosyltransferase 2 family, polypeptide A3	protein-coding	0.020000	0.472637	
mm_53249.1	chr6	127582055	127582255	+	1	NA	NA	NA	4180	NM_001033464	381812	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0.050000	0.577114	
mm_107323.1	chr12	31438118	31438318	+	1	NA	NA	NA	-1	NM_021353	13487	Mm.490454	NM_021353	ENSMUSG00000001225	Slc26a3	9030623B18Rik|9130013M11Rik|AV376035|Dra	solute carrier family 26, member 3	protein-coding	0.005000	0.328358	-34(ACCTATATAAAG,-,0.00),-32(CTATATAAAGAC,+,0.00)
mm_17182.1	chr2	25365554	25365754	-	1	NA	NA	NA	-28	NM_001033293	227620	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	0.070000	0.666667	
mm_81357.1	chr9	108661989	108662189	+	1	NA	NA	NA	-9	NM_020520	57279	Mm.29666	NM_020520	ENSMUSG00000032602	Slc25a20	1110007P09Rik|C78826|Cact|mCAC	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	protein-coding	0.060000	0.621891	
mm_67658.1	chr7	85379630	85379830	-	1	NA	NA	NA	35946	NM_001105182	330581	Mm.469909	NM_001105182	ENSMUSG00000091006	Vmn2r69	-	vomeronasal 2, receptor 69	protein-coding	0.035000	0.512438	
mm_123828.1	chr14	70626939	70627139	-	1	NA	NA	NA	26	NM_001252662	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.055000	0.686567	
mm_140687.1	chr17	13674636	13674836	-	1	NA	NA	NA	-85805	NM_010806	17356	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.030000	0.487562	-33(CCTTTAAGAACC,+,0.00)
mm_102547.1	chr11	61342699	61342899	-	1	NA	NA	NA	61	NM_001033542	380701	Mm.340166	NM_001033542	ENSMUSG00000069855	Slc47a2	4933429E10Rik	solute carrier family 47, member 2	protein-coding	0.115000	0.736318	
mm_97945.1	chr11	83663475	83663675	+	1	NA	NA	NA	991	NM_013652	20303	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.015000	0.487562	
mm_80240.1	chr9	72719049	72719249	+	1	NA	NA	NA	56802	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.000000	0.393035	
mm_78686.1	chr9	40799997	40800197	+	1	NA	NA	NA	-1176	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.070000	0.562189	
mm_93387.1	chr10	106192700	106192900	-	1	NA	NA	NA	-277510	NM_177373	327814	Mm.391424	NM_177373	ENSMUSG00000053825	Ppfia2	5330438O12|B230207K17Rik|E130120L08Rik|mKIAA4112	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding	0.030000	0.477612	
mm_142631.1	chr17	47400518	47400718	-	1	NA	NA	NA	-12	NM_008189	14913	Mm.16224	NM_008189	ENSMUSG00000023982	Guca1a	GC-A|Gcap1|Guca1|mGCAP1	guanylate cyclase activator 1a (retina)	protein-coding	0.035000	0.527363	-5(CTTTTAATACCG,+,0.00)
mm_37106.1	chr4	116638370	116638570	-	1	NA	NA	NA	-10519	NM_016777	50927	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.010000	0.373134	
mm_133790.1	chr16	95258182	95258382	+	1	NA	NA	NA	724	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.010000	0.487562	
mm_28662.1	chr3	95251032	95251232	-	1	NA	NA	NA	61	NM_001168356	171388	Mm.331209	NM_134253	ENSMUSG00000028115	Bnipl	1700128A13Rik|BNIP-S|BNIPL1|BNIPL2|PP73|PP753	BCL2/adenovirus E1B 19kD interacting protein like	protein-coding	0.005000	0.577114	
mm_82665.1	chr9	22117049	22117249	-	1	NA	NA	NA	-2980	NM_170777	66126	Mm.29801	NM_170777	ENSMUSG00000013822	Elof1	1110011K10Rik	ELF1 homolog, elongation factor 1	protein-coding	0.090000	0.606965	
mm_18786.1	chr2	73660274	73660474	-	1	NA	NA	NA	49	NM_175752	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	0.025000	0.517413	
mm_45845.1	chr5	87697977	87698177	-	1	NA	NA	NA	1348	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.417910	-88(TAGTATTTAAGG,-,0.00),-86(GTATTTAAGGGC,+,0.00)
mm_4773.1	chr1	182763888	182764088	+	1	NA	NA	NA	-918	NM_144796	96935	Mm.331052	NM_144796	ENSMUSG00000038576	Susd4	AI848994|E430021N18Rik|N28096	sushi domain containing 4	protein-coding	0.145000	0.781095	
mm_116902.1	chr13	55426689	55426889	-	1	NA	NA	NA	15	NM_021489	58992	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	0.035000	0.577114	
mm_22678.1	chr3	16099771	16099971	+	1	NA	NA	NA	-83312	NR_027375	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.000000	0.383085	
mm_136876.1	chr17	13007599	13007799	+	1	NA	NA	NA	-140	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.060000	0.656716	
mm_169441.1	chr14	56694080	56694280	-	1	NA	NA	NA	6820	NR_046209	100503823	Mm.474486	NR_046209		Gm16973	-	predicted gene, 16973	ncRNA	0.030000	0.467662	
mm_86114.1	chr9	115471596	115471796	-	1	NA	NA	NA	89877	NR_130329	100316675		NR_130329	ENSMUSG00000080409	Mir467h	Mirn467h|mmu-mir-467h	microRNA 467h	ncRNA	0.020000	0.477612	
mm_49919.1	chr6	39150827	39151027	+	1	NA	NA	NA	32454	NR_045813	75379	Mm.348014	NR_045813	ENSMUSG00000073144	4930599N23Rik	-	RIKEN cDNA 4930599N23 gene	ncRNA	0.000000	0.348259	
mm_84522.1	chr9	67043753	67043953	-	1	NA	NA	NA	18	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.130000	0.761194	
mm_77923.1	chr9	7352815	7353015	+	1	NA	NA	NA	5541	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.393035	
mm_2391.1	chr1	93512007	93512207	+	1	NA	NA	NA	3	NM_145519	227377	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	0.170000	0.815920	
mm_60746.1	chr7	45458082	45458282	+	1	NA	NA	NA	1704	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.040000	0.587065	
mm_4676.1	chr1	180420955	180421155	+	1	NA	NA	NA	62449	NM_001081227	381310	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|ENSMUSG00000056615|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.020000	0.542289	
mm_16453.1	chr2	180499806	180500006	+	1	NA	NA	NA	-70	NM_018766	18216	Mm.301712	NM_018766	ENSMUSG00000027568	Ntsr1	NT-1R|NTR-1|NTR1	neurotensin receptor 1	protein-coding	0.085000	0.686567	
mm_167209.1	chr7	145268938	145269138	+	1	NA	NA	NA	14973	NR_132644	233979	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.020000	0.552239	
mm_86853.1	chr10	21669121	21669321	+	1	NA	NA	NA	-21624	NR_045843	432436	Mm.244553	NM_001004162		Gm5420	EG432436	predicted gene 5420	ncRNA	0.040000	0.587065	32(TCCTCTATAGGC,-,0.00)
mm_97972.1	chr11	83853721	83853921	+	1	NA	NA	NA	861	NM_001291269	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.025000	0.333333	
mm_8392.1	chr1	151345214	151345414	-	1	NA	NA	NA	816	NM_001039511	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.125000	0.706468	
mm_155721.1	chrX	96115748	96115948	+	1	NA	NA	NA	19803	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.000000	0.437811	
mm_166875.1	chr7	25412700	25412900	-	1	NA	NA	NA	86	NM_153576	232983	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0.005000	0.472637	-7(GCCTTTAAGAAC,-,0.00),-6(CCTTTAAGAACC,+,0.00)
mm_12510.1	chr2	71981135	71981335	+	1	NA	NA	NA	20	NM_019688	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.160000	0.815920	
mm_105142.1	chr11	101459809	101460009	-	1	NA	NA	NA	6290	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.000000	0.646766	
mm_8592.1	chr1	156005798	156005998	-	1	NA	NA	NA	28919	NM_001160019	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.015000	0.432836	
mm_87187.1	chr10	39369821	39370021	+	1	NA	NA	NA	122	NM_001122893	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.130000	0.746269	
mm_52613.1	chr6	117173734	117173934	+	1	NA	NA	NA	5299	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.020000	0.412935	-23(GCTTTTATAACT,+,0.00)
mm_53402.1	chr6	131380779	131380979	+	1	NA	NA	NA	7571	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.015000	0.393035	
mm_103818.1	chr11	83003568	83003768	-	1	NA	NA	NA	-11838	NM_172796	237886	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.015000	0.427861	
mm_93145.1	chr10	92246980	92247180	-	1	NA	NA	NA	-81902	NR_028262	110333	Mm.429764	NR_028262		Rmst	100041799|AI853140|C230053E11Rik|D930049J19Rik|Dmt2|Gm3515|M2|Ncrms	rhabdomyosarcoma 2 associated transcript (non-coding RNA)	ncRNA	0.010000	0.412935	
mm_61295.1	chr7	67660780	67660980	+	1	NA	NA	NA	13470	NM_025905	67009	Mm.249356	NM_025905	ENSMUSG00000030555	Ttc23	1600012K10Rik	tetratricopeptide repeat domain 23	protein-coding	0.040000	0.512438	
mm_76509.1	chr8	86885195	86885395	-	1	NA	NA	NA	-37	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.150000	0.746269	
mm_116174.1	chr13	30819967	30820167	-	1	NA	NA	NA	70834	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.010000	0.492537	
mm_121921.1	chr14	23464028	23464228	-	1	NA	NA	NA	-369557	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA	0.000000	0.417910	
mm_59801.1	chr7	29134793	29134993	+	1	NA	NA	NA	-40	NM_001174155	233046	Mm.465324	NM_145149	ENSMUSG00000030589	Rasgrp4	-	RAS guanyl releasing protein 4	protein-coding	0.040000	0.646766	
mm_115122.1	chr13	104286998	104287198	+	1	NA	NA	NA	-737	NR_136938	108154	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.040000	0.537313	
mm_135002.1	chr16	32179502	32179702	-	1	NA	NA	NA	-198	NM_001033539	328660	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.015000	0.517413	73(GGCTATAAGAAG,-,0.00)
mm_96164.1	chr11	61487924	61488124	+	1	NA	NA	NA	2580	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.025000	0.557214	
mm_93944.1	chr10	127211477	127211677	-	1	NA	NA	NA	45	NM_054097	117150	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	0.140000	0.761194	
mm_65998.1	chr7	30558679	30558879	-	1	NA	NA	NA	867	NM_029377	75660	Mm.379242	NM_029377	ENSMUSG00000036845	Lin37	1810054G18Rik	lin-37 homolog (C. elegans)	protein-coding	0.010000	0.482587	
mm_159288.1	chr2	172043431	172043631	-	1	NA	NA	NA	-65	NM_175631	228942	Mm.40555	NM_175631	ENSMUSG00000067578	Cbln4	AI848962	cerebellin 4 precursor protein	protein-coding	0.060000	0.616915	-32(GCTTTTCTGGGC,+,0.00)
mm_155303.1	chrX	61185762	61185962	+	1	NA	NA	NA	-304	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.005000	0.398010	
mm_104387.1	chr11	94485178	94485378	-	1	NA	NA	NA	32	NM_144827	217116	Mm.156123	NM_144827	ENSMUSG00000020867	Spata20	Tisp78	spermatogenesis associated 20	protein-coding	0.015000	0.577114	
mm_61881.1	chr7	89632421	89632621	+	1	NA	NA	NA	-297	NM_181407	109264	Mm.334011	NM_181407	ENSMUSG00000030621	Me3	1700020C08Rik|B230207H15Rik	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding	0.025000	0.562189	
mm_44756.1	chr5	31520624	31520824	-	1	NA	NA	NA	6038	NM_028150	72195	Mm.164187	NM_028150	ENSMUSG00000053134	Supt7l	2610524B01Rik|6030455L14Rik	suppressor of Ty 7-like	protein-coding	0.010000	0.432836	
mm_30571.1	chr4	3804281	3804481	+	1	NA	NA	NA	31274	NM_026147	67427	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.005000	0.383085	
mm_37954.1	chr4	133277667	133277867	-	1	NA	NA	NA	23	NM_025667	52174	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	0.120000	0.691542	
mm_133464.1	chr16	89174634	89174834	+	1	NA	NA	NA	-31127	NM_001163615	622935	Mm.459837	NM_001163615	ENSMUSG00000091039	Krtap20-2	1190004K03Rik|EG622935|Gm6371	keratin associated protein 20-2	protein-coding	0.000000	0.467662	-33(GTATATAAAAGG,-,0.00)
mm_119651.1	chr14	52016730	52016930	+	1	NA	NA	NA	-35	NM_001033805	619301	Mm.475177	NM_001033805	ENSMUSG00000072571	Tmem253	G630016D24Rik	transmembrane protein 253	protein-coding	0.010000	0.577114	
mm_64233.1	chr7	141695254	141695454	+	1	NA	NA	NA	5014	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.015000	0.542289	
mm_47233.1	chr5	121385509	121385709	-	1	NA	NA	NA	6	NM_001163470	231712	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.110000	0.731343	
mm_2321.1	chr1	92052423	92052623	+	1	NA	NA	NA	127818	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.005000	0.532338	
mm_49621.1	chr6	30803262	30803462	+	1	NA	NA	NA	62063	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.477612	
mm_150741.1	chr19	43782227	43782427	+	1	NA	NA	NA	19	NM_013806	12780	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0.015000	0.422886	
mm_12891.1	chr2	84798188	84798388	+	1	NA	NA	NA	-540	NM_019949	56791	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.040000	0.492537	
mm_21308.1	chr2	157079243	157079443	-	1	NA	NA	NA	-78	NM_001164663	320706	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.160000	0.815920	
mm_68292.1	chr7	105736368	105736568	-	1	NA	NA	NA	116	NM_025897	101867	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.095000	0.651741	
mm_167253.1	chr8	24823876	24824076	-	1	NA	NA	NA	393	NM_001272058	11499	Mm.143889	NM_007401	ENSMUSG00000031554	Adam5	tMDC II|tMDCII	a disintegrin and metallopeptidase domain 5	protein-coding	0.030000	0.557214	8(GCATCTTAAAGG,-,0.00)
mm_97550.1	chr11	78928510	78928710	+	1	NA	NA	NA	3319	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.512438	
mm_17919.1	chr2	35432806	35433006	-	1	NA	NA	NA	28543	NM_001308299	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.020000	0.577114	
mm_169021.1	chr13	112578629	112578829	-	1	NA	NA	NA	1933	NM_139299	218624	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	0.030000	0.462687	
mm_50082.1	chr6	41522778	41522978	+	1	NA	NA	NA	1102	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.472637	15(GTCCCTAAATGC,-,0.00)
mm_33945.1	chr4	137277409	137277609	+	1	NA	NA	NA	-126	NM_009523	22417	Mm.20355	NM_009523	ENSMUSG00000036856	Wnt4	Wnt-4	wingless-type MMTV integration site family, member 4	protein-coding	0.175000	0.860697	
mm_42462.1	chr5	115438114	115438314	+	1	NA	NA	NA	8529	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.005000	0.572139	
mm_104867.1	chr11	99387547	99387747	-	1	NA	NA	NA	1717	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.035000	0.497512	
mm_12416.1	chr2	70561416	70561616	+	1	NA	NA	NA	-613	NM_001312900	14415	Mm.272120	NM_008077	ENSMUSG00000070880	Gad1	EP10|Gad-1	glutamate decarboxylase 1	protein-coding	0.020000	0.502488	
mm_122668.1	chr14	51922890	51923090	-	1	NA	NA	NA	-217	NM_001011687	497071	Mm.378602	NM_001011687	ENSMUSG00000068392	Rnase13	-	ribonuclease, RNase A family, 13 (non-active)	protein-coding	0.005000	0.557214	
mm_53351.1	chr6	129350220	129350420	+	1	NA	NA	NA	76	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.005000	0.412935	
mm_52666.1	chr6	117906736	117906936	+	1	NA	NA	NA	54	NM_133834	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.090000	0.696517	
mm_169669.1	chr15	62693675	62693875	-	1	NA	NA	NA	-474324	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.040000	0.547264	-43(CTTCTTATAGGC,+,0.00)
mm_70617.1	chr8	13435504	13435704	+	1	NA	NA	NA	145	NM_001143672	272465	Mm.250502	NM_001143671	ENSMUSG00000038457	Tmem255b	Fam70b|Gm687	transmembrane protein 255B	protein-coding	0.045000	0.626866	
mm_6843.1	chr1	84235217	84235417	-	1	NA	NA	NA	-16356	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.398010	
mm_107401.1	chr12	33337410	33337610	+	1	NA	NA	NA	34995	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.015000	0.452736	
mm_119111.1	chr14	31001782	31001982	+	1	NA	NA	NA	-216	NM_026911	69019	Mm.28852	NM_026911	ENSMUSG00000021917	Spcs1	1810004F21Rik	signal peptidase complex subunit 1 homolog (S. cerevisiae)	protein-coding	0.125000	0.756219	
mm_105052.1	chr11	100692357	100692557	-	1	NA	NA	NA	11814	NM_030150	80861	Mm.271830	NM_030150	ENSMUSG00000017830	Dhx58	B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3	DEXH (Asp-Glu-X-His) box polypeptide 58	protein-coding	0.065000	0.671642	
mm_126280.1	chr15	79209211	79209411	+	1	NA	NA	NA	-19862	NM_008837	18693	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	0.050000	0.626866	
mm_82896.1	chr9	32615846	32616046	-	1	NA	NA	NA	-74494	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.005000	0.407960	
mm_27951.1	chr3	79825448	79825648	-	1	NA	NA	NA	17114	NM_027495	70652	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.020000	0.502488	
mm_38435.1	chr4	139352462	139352662	-	1	NA	NA	NA	14	NM_001290810	69902	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	0.085000	0.691542	
mm_48250.1	chr5	137787437	137787637	-	1	NA	NA	NA	-265	NM_001005426	381678	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	0.020000	0.462687	
mm_3892.1	chr1	161395445	161395645	+	1	NA	NA	NA	107	NM_009452	22164	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	0.020000	0.537313	
mm_29908.1	chr3	131474411	131474611	-	1	NA	NA	NA	-90257	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.015000	0.532338	
mm_163716.1	chr13	111805857	111806057	+	1	NA	NA	NA	3026	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.020000	0.422886	-76(GCTTCTAAAAGG,-,0.00)
mm_82648.1	chr9	22018166	22018366	-	1	NA	NA	NA	15278	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.015000	0.522388	
mm_148471.1	chr19	4097327	4097527	+	1	NA	NA	NA	76	NM_026373	52004	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0.075000	0.701493	
mm_21783.1	chr2	164851470	164851670	-	1	NA	NA	NA	6138	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.035000	0.572139	
mm_84337.1	chr9	64172804	64173004	-	1	NA	NA	NA	27	NM_026507	68014	Mm.335237	NM_026507	ENSMUSG00000032400	Zwilch	2310031L18Rik	zwilch kinetochore protein	protein-coding	0.100000	0.562189	
mm_29601.1	chr3	121159128	121159328	-	1	NA	NA	NA	12467	NM_028456	66568	Mm.263163	NM_025637	ENSMUSG00000028133	Rwdd3	2510027J23Rik|3110037C01Rik|AI035684|AI662458|Rsume|X2CR1	RWD domain containing 3	protein-coding	0.015000	0.422886	
mm_51081.1	chr6	66970419	66970619	+	1	NA	NA	NA	-66080	NR_040278	320172	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0.015000	0.502488	
mm_64499.1	chr7	143475041	143475241	+	1	NA	NA	NA	25	NM_001042760	18400	Mm.271740	NM_008767	ENSMUSG00000000154	Slc22a18	AW260131|BWR1A|BWSCR1A|HET|ITM|Impt1|Orctl2|Slc22a1l|TSSC5|p45-BWR1A	solute carrier family 22 (organic cation transporter), member 18	protein-coding	0.035000	0.587065	
mm_156054.1	chrX	109106920	109107120	+	1	NA	NA	NA	11613	NM_019989	56726	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	0.000000	0.278607	
mm_135282.1	chr16	38447486	38447686	-	1	NA	NA	NA	5103	NM_007414	11544	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.060000	0.611940	
mm_124547.1	chr14	122475067	122475267	-	1	NA	NA	NA	32	NR_045046	69248	Mm.235369	NR_045046	ENSMUSG00000085555	2610035F20Rik	-	RIKEN cDNA 2610035F20 gene	ncRNA	0.115000	0.716418	
mm_139349.1	chr17	50508811	50509011	+	1	NA	NA	NA	-636	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.110000	0.741294	
mm_69260.1	chr7	127890836	127891036	-	1	NA	NA	NA	34	NM_001081268	330657	Mm.425491	NM_001081268	ENSMUSG00000044139	Prss53	Pol3s|mFLJ00289	protease, serine 53	protein-coding	0.015000	0.592040	
mm_115507.1	chr13	4279300	4279500	-	1	NA	NA	NA	-1	NM_013777	622402	Mm.27447	NM_013777	ENSMUSG00000021211	Akr1c12	AI266976|Akra	aldo-keto reductase family 1, member C12	protein-coding	0.010000	0.472637	
mm_47867.1	chr5	134639230	134639430	-	1	NA	NA	NA	79	NM_001312867	22384	Mm.27955	NM_033561	ENSMUSG00000040731	Eif4h	AU018978|D5Ertd355e|E430026L18Rik|Ef4h|Wbscr1|Wscr1|eIF-4H	eukaryotic translation initiation factor 4H	protein-coding	0.125000	0.681592	
mm_93919.1	chr10	127069003	127069203	-	1	NA	NA	NA	1158	NM_025982	67125	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	0.005000	0.472637	
mm_170376.1	chr1	85526550	85526750	+	1	NA	NA	NA	72160	NM_030194	109032	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|ENSMUSG00000075603|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.005000	0.577114	
mm_37830.1	chr4	132014208	132014408	-	1	NA	NA	NA	34770	NM_001128606	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.015000	0.303483	0(GCTTTTAGAAGG,+,0.00)
mm_73396.1	chr8	105827672	105827872	+	1	NA	NA	NA	28	NM_024445	72236	Mm.386810	NM_024445	ENSMUSG00000031893	Tsnaxip1	1700016K08Rik|TXI1	translin-associated factor X (Tsnax) interacting protein 1	protein-coding	0.045000	0.582090	
mm_148937.1	chr19	7039432	7039632	+	1	NA	NA	NA	494	NM_016737	20867	Mm.258633	NM_016737	ENSMUSG00000024966	Stip1	Hop|Sti1|p60	stress-induced phosphoprotein 1	protein-coding	0.085000	0.641791	
mm_161184.1	chr13	48831921	48832121	-	1	NA	NA	NA	38864	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.040000	0.616915	
mm_148588.1	chr19	5068008	5068208	+	1	NA	NA	NA	30	NM_054042	70445	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.105000	0.766169	
mm_5996.1	chr1	58725793	58725993	-	1	NA	NA	NA	-4659	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.010000	0.517413	
mm_102583.1	chr11	61854779	61854979	-	1	NA	NA	NA	213	NM_013881	29869	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.150000	0.796020	
mm_26424.1	chr3	142618168	142618368	+	1	NA	NA	NA	-2395	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.010000	0.407960	
mm_107882.1	chr12	69987107	69987307	+	1	NA	NA	NA	-205	NM_022028	64010	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0.185000	0.815920	
mm_90283.1	chr10	122944625	122944825	+	1	NA	NA	NA	40999	NR_029527	387251		NR_029527	ENSMUSG00000065406	Mirlet7i	Mirnlet7i|let-7i|mmu-let-7i	microRNA let7i	ncRNA	0.020000	0.407960	
mm_1558.1	chr1	74031234	74031434	+	1	NA	NA	NA	93113	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.005000	0.557214	
mm_118266.1	chr13	112561933	112562133	-	1	NA	NA	NA	18629	NM_139299	218624	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	0.010000	0.442786	-82(AGCTTTAAAAAC,-,0.00),-35(TCCCTTATAAGA,-,0.00),-33(CCTTATAAGAAG,+,0.00)
mm_84579.1	chr9	69439907	69440107	-	1	NA	NA	NA	-13676	NM_007585	12306	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	0.015000	0.472637	
mm_65153.1	chr7	19628316	19628516	-	1	NA	NA	NA	1022	NM_001290457	19698	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.055000	0.562189	
mm_41939.1	chr5	105731534	105731734	+	1	NA	NA	NA	30824	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.015000	0.477612	
mm_22260.1	chr2	177957199	177957399	-	1	NA	NA	NA	-11	NM_001190302	665211	Mm.441314	NM_001190302	ENSMUSG00000078862	Gm14326	OTTMUSG00000016327	predicted gene 14326	protein-coding	0.015000	0.502488	
mm_133769.1	chr16	94569932	94570132	+	1	NA	NA	NA	-174	NM_007890	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.180000	0.800995	
mm_147522.1	chr18	52529537	52529737	-	1	NA	NA	NA	84	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.055000	0.562189	
mm_24699.1	chr3	95126094	95126294	+	1	NA	NA	NA	1680	NM_016712	50874	Mm.71935	NM_016712	ENSMUSG00000005628	Tmod4	MTMOD|Sk-Tmod	tropomodulin 4	protein-coding	0.005000	0.472637	
mm_123304.1	chr14	61682223	61682423	-	1	NA	NA	NA	50	NR_028264	668253	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.090000	0.626866	
mm_78238.1	chr9	21625559	21625759	+	1	NA	NA	NA	9490	NM_001174078	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.010000	0.497512	
mm_110692.1	chr12	69184350	69184550	-	1	NA	NA	NA	292	NM_146035	217664	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	0.130000	0.741294	
mm_172712.1	chr8	69791509	69791709	-	1	NA	NA	NA	446	NM_133224	170759	Mm.186066	NM_133224	ENSMUSG00000031862	Atp13a1	Atp13a|Cgi152|catp	ATPase type 13A1	protein-coding	0.120000	0.721393	
mm_123272.1	chr14	61366577	61366777	-	1	NA	NA	NA	-6232	NM_026598	68177	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0.000000	0.273632	
mm_50932.1	chr6	57702398	57702598	+	1	NA	NA	NA	43	NM_133737	71835	Mm.274904	NM_133737	ENSMUSG00000062190	Lancl2	1700003F10Rik	LanC (bacterial lantibiotic synthetase component C)-like 2	protein-coding	0.015000	0.462687	
mm_54539.1	chr6	36741335	36741535	-	1	NA	NA	NA	69926	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.010000	0.432836	
mm_56799.1	chr6	116656401	116656601	-	1	NA	NA	NA	5817	NM_001166580	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.000000	0.437811	
mm_95769.1	chr11	54908513	54908713	+	1	NA	NA	NA	5759	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.020000	0.542289	
mm_25917.1	chr3	131156226	131156426	+	1	NA	NA	NA	43535	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.015000	0.393035	
mm_150334.1	chr19	34575154	34575354	+	1	NA	NA	NA	-8275	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.000000	0.293532	
mm_22421.1	chr2	181581882	181582082	-	1	NA	NA	NA	-9	NM_026765	68556	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	0.100000	0.716418	
mm_94306.1	chr11	4178026	4178226	+	1	NA	NA	NA	-8707	NM_134023	103724	Mm.28140	NM_134023	ENSMUSG00000034412	Tbc1d10a	AI447804|EPI64|Tbc1d10|mFLJ00288	TBC1 domain family, member 10a	protein-coding	0.010000	0.562189	
mm_87738.1	chr10	60218842	60219042	+	1	NA	NA	NA	318	NM_016803	53374	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	0.125000	0.746269	
mm_13791.1	chr2	118861916	118862116	+	1	NA	NA	NA	16	NM_019826	56357	Mm.6635	NM_019826	ENSMUSG00000027332	Ivd	1300016K07Rik|6720455E18Rik|AI463340	isovaleryl coenzyme A dehydrogenase	protein-coding	0.070000	0.616915	
mm_139474.1	chr17	55986413	55986613	+	1	NA	NA	NA	2	NM_183178	240121	Mm.270660	NM_183178	ENSMUSG00000011589	Fsd1	-	fibronectin type 3 and SPRY domain-containing protein	protein-coding	0.090000	0.626866	
mm_47076.1	chr5	116591762	116591962	-	1	NA	NA	NA	-45	NM_026886	68955	Mm.146779	NM_026886	ENSMUSG00000063919	Srrm4	1500001A10Rik|B230202K19Rik|bv|mKIAA1853|nSR100	serine/arginine repetitive matrix 4	protein-coding	0.090000	0.641791	
mm_65476.1	chr7	25539726	25539926	-	1	NA	NA	NA	178	NM_001113368	26367	Mm.439731	NM_007543	ENSMUSG00000054385	Ceacam2	AI267129|Bgp2|Ceacam2-L	carcinoembryonic antigen-related cell adhesion molecule 2	protein-coding	0.005000	0.537313	
mm_121151.1	chr14	101918996	101919196	+	1	NA	NA	NA	78473	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.015000	0.442786	
mm_15579.1	chr2	158667998	158668198	+	1	NA	NA	NA	963	NM_001159662	228852	Mm.150540	NM_153089	ENSMUSG00000037754	Ppp1r16b	ANKRD4|C130078N17Rik|TIMAP|Wdt4	protein phosphatase 1, regulatory (inhibitor) subunit 16B	protein-coding	0.070000	0.646766	
mm_75115.1	chr8	34528998	34529198	-	1	NA	NA	NA	111218	NR_040706	330734	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	0.005000	0.452736	
mm_86842.1	chr10	21419352	21419552	+	1	NA	NA	NA	42152	NM_178713	237320	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0.055000	0.542289	
mm_80298.1	chr9	73122899	73123099	+	1	NA	NA	NA	9530	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0.005000	0.388060	
mm_69535.1	chr7	135694908	135695108	-	1	NA	NA	NA	21371	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.507463	
mm_53635.1	chr6	140607410	140607610	+	1	NA	NA	NA	-15153	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.010000	0.547264	-24(CACTATAAAAGG,-,0.00)
mm_122325.1	chr14	36968681	36968881	-	1	NA	NA	NA	-17	NM_027045	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.135000	0.766169	
mm_134733.1	chr16	22899047	22899247	-	1	NA	NA	NA	-4761	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.015000	0.512438	
mm_85694.1	chr9	108079640	108079840	-	1	NA	NA	NA	-365	NM_032543	84585	Mm.379272	NM_032543	ENSMUSG00000041528	Rnf123	BC003945|Kpc1	ring finger protein 123	protein-coding	0.010000	0.552239	
mm_122451.1	chr14	45313275	45313475	-	1	NA	NA	NA	5197	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.025000	0.587065	
mm_138318.1	chr17	34836966	34837166	+	1	NA	NA	NA	47	NM_001163770	112403	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	0.110000	0.656716	
mm_147651.1	chr18	60501619	60501819	-	1	NA	NA	NA	264	NM_134133	106878	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.040000	0.577114	
mm_36079.1	chr4	58206439	58206639	-	1	NA	NA	NA	57	NM_022814	64817	Mm.261024	NM_022814	ENSMUSG00000028369	Svep1	1110021D17Rik|4833413O10Rik|AA387071|D430029O09Rik|Polydom	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	protein-coding	0.060000	0.601990	
mm_93813.1	chr10	121374366	121374566	-	1	NA	NA	NA	9376	NM_029364	75612	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.035000	0.542289	
mm_30576.1	chr4	3939301	3939501	+	1	NA	NA	NA	-23	NR_104356	66433	Mm.27406	NM_181391	ENSMUSG00000042198	Chchd7	1810049H20Rik	coiled-coil-helix-coiled-coil-helix domain containing 7	protein-coding	0.030000	0.507463	
mm_32495.1	chr4	108328058	108328258	+	1	NA	NA	NA	6	NM_027250	69893	Mm.28354	NM_027250	ENSMUSG00000048351	Coa7	2010305A19Rik|AI451324|D4Ertd796e|Selrc1	cytochrome c oxidase assembly factor 7	protein-coding	0.070000	0.626866	
mm_71848.1	chr8	68905742	68905942	+	1	NA	NA	NA	25287	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.388060	
mm_130100.1	chr15	89426148	89426348	-	1	NA	NA	NA	-386	NM_009948	12895	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	0.005000	0.517413	-78(GGGCTTAAAAGT,-,0.00)
mm_44170.1	chr5	150800752	150800952	+	1	NA	NA	NA	127025	NM_001346503	100710	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	0.015000	0.467662	
mm_41474.1	chr5	91517657	91517857	+	1	NA	NA	NA	57	NM_145562	231440	Mm.5002	NM_145562	ENSMUSG00000034981	Parm1	2210012L08Rik|9130213B05Rik|W91666	prostate androgen-regulated mucin-like protein 1	protein-coding	0.095000	0.711443	
mm_137085.1	chr17	21474815	21475015	+	1	NA	NA	NA	-14073	NM_013843	24132	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	0.015000	0.517413	22(TCTTATAAACAG,+,0.00)
mm_11568.1	chr2	32894461	32894661	+	1	NA	NA	NA	18427	NM_146119	227737	Mm.301646	NM_146119	ENSMUSG00000026796	Fam129b	9130404D14Rik	family with sequence similarity 129, member B	protein-coding	0.010000	0.452736	
mm_47272.1	chr5	121895247	121895447	-	1	NA	NA	NA	46319	NM_175474	231717	Mm.12654	NM_175474	ENSMUSG00000044134	Fam109a	A230106M15Rik|AU017694|IPIP27A|Ses1	family with sequence similarity 109, member A	protein-coding	0.045000	0.492537	
mm_34580.1	chr4	150120596	150120796	+	1	NA	NA	NA	1352	NM_019741	56485	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	0.025000	0.517413	
mm_63485.1	chr7	127748014	127748214	+	1	NA	NA	NA	1339	NM_172748	233902	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.010000	0.587065	
mm_143178.1	chr17	57247260	57247460	-	1	NA	NA	NA	110	NM_001308074	78308	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0.045000	0.631841	
mm_44199.1	chr5	3647824	3648024	-	1	NA	NA	NA	12	NM_026033	67210	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|ENSMUSG00000073241|Odag	GATA zinc finger domain containing 1	protein-coding	0.150000	0.815920	
mm_68461.1	chr7	110288132	110288332	-	1	NA	NA	NA	66529	NM_009302	20947	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.010000	0.552239	
mm_700.1	chr1	40606158	40606358	+	1	NA	NA	NA	26031	NM_177084	110895	Mm.108602	NM_177084	ENSMUSG00000026065	Slc9a4	AW990558|D730009J23Rik|NHE4	solute carrier family 9 (sodium/hydrogen exchanger), member 4	protein-coding	0.000000	0.427861	59(TGGTTTTAAAAG,-,0.00),60(GGTTTTAAAAGG,-,0.00),61(GTTTTAAAAGGT,+,0.00)
mm_83246.1	chr9	42399821	42400021	-	1	NA	NA	NA	8	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.015000	0.417910	-60(CTCTTTTTAAAG,-,0.00),-59(TCTTTTTAAAGG,-,0.00),-58(CTTTTTAAAGGA,+,0.00)
mm_61745.1	chr7	82648254	82648454	+	1	NA	NA	NA	174	NM_177894	330577	Mm.222812	NM_177894	ENSMUSG00000038570	Saxo2	1700129I04Rik|D030069K18|Fam154b	stabilizer of axonemal microtubules 2	protein-coding	0.075000	0.681592	
mm_145390.1	chr18	57142523	57142723	+	1	NA	NA	NA	9533	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.010000	0.407960	
mm_18887.1	chr2	76709373	76709573	-	1	NA	NA	NA	34158	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.040000	0.537313	
mm_21958.1	chr2	167189998	167190198	-	1	NA	NA	NA	-1280	NM_008420	16500	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	0.185000	0.771144	
mm_91091.1	chr10	19061787	19061987	-	1	NA	NA	NA	-46477	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.010000	0.393035	
mm_116832.1	chr13	54683998	54684198	-	1	NA	NA	NA	3710	NM_001146025	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.025000	0.646766	
mm_151039.1	chr19	47023451	47023651	+	1	NA	NA	NA	-8362	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.025000	0.472637	
mm_14997.1	chr2	152413592	152413792	+	1	NA	NA	NA	1352	NM_175126	67917	Mm.391810	NM_175126	ENSMUSG00000074682	Zcchc3	2810406K24Rik	zinc finger, CCHC domain containing 3	protein-coding	0.045000	0.582090	
mm_164663.1	chr17	40442897	40443097	+	1	NA	NA	NA	-77025	NM_001177584	100126778	Mm.422023	NM_001177584	ENSMUSG00000090747	Esp8	Gm17495	exocrine gland secreted peptide 8	protein-coding	0.000000	0.283582	
mm_33442.1	chr4	130360084	130360284	+	1	NA	NA	NA	52	NM_025645	66585	Mm.423019	NM_025645	ENSMUSG00000074088	Snrnp40	0610009C03Rik|Prp8bp|Wdr57	small nuclear ribonucleoprotein 40 (U5)	protein-coding	0.100000	0.631841	
mm_9531.1	chr1	173802650	173802850	-	1	NA	NA	NA	-35831	NM_008329	15951	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.005000	0.442786	
mm_70470.1	chr8	12323568	12323768	+	1	NA	NA	NA	-62103	NR_027975	434280	Mm.447484	NM_001013812	ENSMUSG00000047935	Gm5607	EG434280	predicted gene 5607	ncRNA	0.010000	0.497512	
mm_117248.1	chr13	64364068	64364268	-	1	NA	NA	NA	6352	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.025000	0.457711	
mm_101050.1	chr11	8653086	8653286	-	1	NA	NA	NA	11349	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.020000	0.462687	
mm_171202.1	chr3	54481610	54481810	+	1	NA	NA	NA	120603	NM_015784	50706	Mm.236067	NM_015784	ENSMUSG00000027750	Postn	A630052E07Rik|AI747096|OSF-2|Osf2|PLF|PN	periostin, osteoblast specific factor	protein-coding	0.030000	0.462687	82(TGGTATTAAAGA,-,0.00)
mm_41477.1	chr5	91962370	91962570	+	1	NA	NA	NA	86	NR_073442	68098	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0.040000	0.522388	
mm_170616.1	chr19	61199706	61199906	-	1	NA	NA	NA	-23497	NM_001177513	633057	Mm.426097	NM_001177513	ENSMUSG00000094649	Gm7102	EG633057	predicted gene 7102	protein-coding	0.065000	0.542289	
mm_132184.1	chr16	32419680	32419880	+	1	NA	NA	NA	78	NM_001347183	66061	Mm.302693	NM_025329	ENSMUSG00000014075	Tctex1d2	0610012D17Rik|2410011K15Rik	Tctex1 domain containing 2	protein-coding	0.085000	0.611940	
mm_5348.1	chr1	25094209	25094409	-	1	NA	NA	NA	183645	NM_001204913	100504323	Mm.484176	NM_001204913		Gm20172	-	predicted gene, 20172	protein-coding	0.020000	0.472637	
mm_33396.1	chr4	129820579	129820779	+	1	NA	NA	NA	-29	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.125000	0.786070	
mm_68498.1	chr7	111078430	111078630	-	1	NA	NA	NA	4500	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.010000	0.447761	-88(CTGTTTAAAGGG,-,0.00)
mm_40325.1	chr5	43910330	43910530	+	1	NA	NA	NA	41621	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.005000	0.432836	
mm_172579.1	chr8	120719845	120720045	-	1	NA	NA	NA	-16413	NM_008320	15900	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.050000	0.611940	
mm_40478.1	chr5	54047418	54047618	+	1	NA	NA	NA	48995	NM_001081103	116873	Mm.265985	NM_054083	ENSMUSG00000039156	Stim2	-	stromal interaction molecule 2	protein-coding	0.005000	0.422886	
mm_125222.1	chr15	34083271	34083471	+	1	NA	NA	NA	652	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.080000	0.621891	
mm_99282.1	chr11	101316763	101316963	+	1	NA	NA	NA	612	NM_011192	19192	Mm.288477	NM_011192	ENSMUSG00000078652	Psme3	AA410043|AU020960|Ki|PA28gamma|REGgamma|pa28g	proteaseome (prosome, macropain) activator subunit 3 (PA28 gamma, Ki)	protein-coding	0.030000	0.597015	
mm_94373.1	chr11	5099536	5099736	+	1	NA	NA	NA	-112	NR_110961	279766	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0.085000	0.721393	
mm_1383.1	chr1	66926477	66926677	+	1	NA	NA	NA	8789	NM_001113387	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.035000	0.527363	
mm_51413.1	chr6	78380974	78381174	+	1	NA	NA	NA	365	NM_011259	19694	Mm.2552	NM_011259	ENSMUSG00000079516	Reg3a	AV063448	regenerating islet-derived 3 alpha	protein-coding	0.000000	0.467662	
mm_52226.1	chr6	103511783	103511983	+	1	NA	NA	NA	1007	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.040000	0.577114	
mm_123199.1	chr14	59260088	59260288	-	1	NA	NA	NA	28	NM_001164329	628693	Mm.479519	NM_001164329	ENSMUSG00000090881	Gm6904	EG628693	predicted gene 6904	protein-coding	0.010000	0.507463	
mm_18442.1	chr2	60888935	60889135	-	1	NA	NA	NA	-7597	NM_001141931	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.010000	0.422886	
mm_8273.1	chr1	139660832	139661032	-	1	NA	NA	NA	-100710	NM_015780	50702	Mm.220362	NM_015780	ENSMUSG00000057037	Cfhr1	AI194696|CFHRB|Cfhl1	complement factor H-related 1	protein-coding	0.005000	0.422886	
mm_116746.1	chr13	51793438	51793638	-	1	NA	NA	NA	209	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.160000	0.766169	
mm_75983.1	chr8	72284871	72285071	-	1	NA	NA	NA	-34091	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.015000	0.492537	
mm_136431.1	chr16	94370402	94370602	-	1	NA	NA	NA	48	NM_001159618	56176	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0.065000	0.626866	
mm_111744.1	chr12	103904797	103904997	-	1	NA	NA	NA	53	NM_009245	20702	Mm.439692	NM_009245	ENSMUSG00000079015	Serpina1c	Pi3|Pi6|Skalp|Spi1-3|Spi1-6|Wap3	serine (or cysteine) peptidase inhibitor, clade A, member 1C	protein-coding	0.005000	0.502488	
mm_134376.1	chr16	17144333	17144533	-	1	NA	NA	NA	-10	NM_029779	76872	Mm.101656	NM_029779	ENSMUSG00000022768	Ccdc116	4930432J16Rik	coiled-coil domain containing 116	protein-coding	0.010000	0.512438	3(GAGCTTTAAAGG,-,0.00),4(AGCTTTAAAGGG,-,0.00),5(GCTTTAAAGGGT,+,0.00)
mm_23696.1	chr3	68693645	68693845	+	1	NA	NA	NA	2321	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.010000	0.422886	
mm_129960.1	chr15	85409105	85409305	-	1	NA	NA	NA	72824	NM_016843	54138	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.005000	0.393035	
mm_36823.1	chr4	105109711	105109911	-	1	NA	NA	NA	87	NM_178143	108079	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding	0.145000	0.741294	
mm_118069.1	chr13	102905979	102906179	-	1	NA	NA	NA	145824	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.015000	0.492537	
mm_46903.1	chr5	114271063	114271263	-	1	NA	NA	NA	2598	NM_148935	116810	Mm.17709	NM_148935	ENSMUSG00000042002	Foxn4	-	forkhead box N4	protein-coding	0.035000	0.577114	
mm_14088.1	chr2	125152499	125152699	+	1	NA	NA	NA	-1	NM_183354	20495	Mm.3914	NM_011389	ENSMUSG00000027202	Slc12a1	AI788571|D630042G03Rik|Nkcc2|mBSC1|urehr3	solute carrier family 12, member 1	protein-coding	0.025000	0.492537	-33(CCCCATATATGC,-,0.00)
mm_159796.1	chr5	111417885	111418085	+	1	NA	NA	NA	-181	NM_001081235	433938	Mm.332576	NM_001081235	ENSMUSG00000070576	Mn1	AA003644|AA009236	meningioma 1	protein-coding	0.135000	0.731343	
mm_29474.1	chr3	115710943	115711143	-	1	NA	NA	NA	4012	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.015000	0.333333	
mm_127733.1	chr15	103293305	103293505	+	1	NA	NA	NA	8280	NR_029766	724064		NR_029766	ENSMUSG00000065560	Mir148b	Mirn148b|mir-148b	microRNA 148b	ncRNA	0.005000	0.422886	
mm_118316.1	chr13	113155424	113155624	-	1	NA	NA	NA	19448	NR_131045	76720	Mm.54263	NR_131045		1700084D21Rik	-	RIKEN cDNA 1700084D21 gene	ncRNA	0.040000	0.492537	
mm_69475.1	chr7	133732168	133732368	-	1	NA	NA	NA	22935	NM_025392	66165	Mm.389983	NM_025392	ENSMUSG00000030983	Bccip	1110013J05Rik|TOK-1	BRCA2 and CDKN1A interacting protein	protein-coding	0.005000	0.412935	
mm_14392.1	chr2	129800636	129800836	+	1	NA	NA	NA	219	NM_001038635	67333	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	0.120000	0.711443	
mm_70139.1	chr7	143296448	143296648	-	1	NA	NA	NA	-1	NR_001461	63830	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.055000	0.577114	
mm_43331.1	chr5	135009672	135009872	+	1	NA	NA	NA	316	NR_033794	68758	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.065000	0.641791	
mm_9400.1	chr1	172234528	172234728	-	1	NA	NA	NA	-14733	NM_009813	12372	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.015000	0.502488	
mm_152357.1	chr19	10064696	10064896	-	1	NA	NA	NA	23248	NM_021890	60527	Mm.253875	NM_021890	ENSMUSG00000024664	Fads3	AI464531	fatty acid desaturase 3	protein-coding	0.020000	0.601990	
mm_36082.1	chr4	58206508	58206708	-	1	NA	NA	NA	-12	NM_022814	64817	Mm.261024	NM_022814	ENSMUSG00000028369	Svep1	1110021D17Rik|4833413O10Rik|AA387071|D430029O09Rik|Polydom	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	protein-coding	0.030000	0.552239	-33(CATTTTATAGGC,+,0.00)
mm_102323.1	chr11	57518526	57518726	-	1	NA	NA	NA	18	NM_001168667	67726	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	0.135000	0.701493	
mm_84253.1	chr9	62497762	62497962	-	1	NA	NA	NA	39182	NM_175484	235431	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.020000	0.507463	
mm_41613.1	chr5	96793329	96793529	+	1	NA	NA	NA	44	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.055000	0.646766	
mm_49255.1	chr6	17408242	17408442	+	1	NA	NA	NA	-55615	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.000000	0.393035	-85(CTATTTATACTC,+,0.00)
mm_158289.1	chrX	112698281	112698481	-	1	NA	NA	NA	270	NM_181579	69693	Mm.34964	NM_181579	ENSMUSG00000034607	Pof1b	2310066B14Rik	premature ovarian failure 1B	protein-coding	0.015000	0.527363	
mm_145876.1	chr18	65476094	65476294	+	1	NA	NA	NA	45197	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.035000	0.542289	
mm_60551.1	chr7	44480900	44481100	+	1	NA	NA	NA	-3517	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.462687	
mm_125512.1	chr15	55591682	55591882	+	1	NA	NA	NA	34374	NM_001168250	105837	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0.005000	0.547264	
mm_58745.1	chr7	13278455	13278655	+	1	NA	NA	NA	166	NM_177312	321008	Mm.458832	NM_177312	ENSMUSG00000070814	6330408A02Rik	-	RIKEN cDNA 6330408A02 gene	protein-coding	0.070000	0.651741	
mm_35080.1	chr4	6991157	6991357	-	1	NA	NA	NA	-534	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.055000	0.701493	
mm_160468.1	chr8	111177901	111178101	-	1	NA	NA	NA	-32503	NR_040364	434350	Mm.442061	NR_040363		9430091E24Rik	-	RIKEN cDNA 9430091E24 gene	ncRNA	0.005000	0.452736	
mm_153947.1	chr19	47580424	47580624	-	1	NA	NA	NA	505	NM_001164639	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0.060000	0.547264	-96(GATTTTAAAAGA,-,0.00)
mm_148856.1	chr19	6397550	6397750	+	1	NA	NA	NA	-2933	NM_011242	19395	Mm.77017	NM_011242	ENSMUSG00000032946	Rasgrp2	CDC25L|Caldaggef1	RAS, guanyl releasing protein 2	protein-coding	0.050000	0.577114	
mm_55991.1	chr6	86003482	86003682	-	1	NA	NA	NA	-13609	NM_012013	26910	Mm.8024	NM_012013	ENSMUSG00000030001	Figla	FIGalpha|bHLHc8	folliculogenesis specific basic helix-loop-helix	protein-coding	0.035000	0.597015	
mm_139102.1	chr17	47141121	47141321	+	1	NA	NA	NA	279	NM_001097623	224829	Mm.260989	NM_172622		Trerf1	9430096I18Rik|AI429294|B830015H24|RAPA|Trep-132|Trep132	transcriptional regulating factor 1	protein-coding	0.045000	0.641791	
mm_53830.1	chr6	148047294	148047494	+	1	NA	NA	NA	-22	NM_001347516	330450	Mm.447274	NM_178797	ENSMUSG00000030303	Far2	A230046P18|AW048109|BC055759|Mlstd1	fatty acyl CoA reductase 2	protein-coding	0.075000	0.651741	
mm_121865.1	chr14	20733560	20733760	-	1	NA	NA	NA	902	NM_010811	17423	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0.005000	0.472637	
mm_10078.1	chr1	195131399	195131599	-	1	NA	NA	NA	71	NM_013499	12946	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	0.025000	0.492537	
mm_66610.1	chr7	45466379	45466579	-	1	NA	NA	NA	419	NM_007527	12028	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.025000	0.621891	
mm_171158.1	chr3	22730920	22731120	-	1	NA	NA	NA	479650	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0.065000	0.631841	
mm_59669.1	chr7	28377391	28377591	+	1	NA	NA	NA	1737	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.005000	0.522388	
mm_95343.1	chr11	48782486	48782686	+	1	NA	NA	NA	-17774	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.000000	0.318408	
mm_78827.1	chr9	44107221	44107421	+	1	NA	NA	NA	12	NM_001190319	235312	Mm.227110	NM_145613	ENSMUSG00000079592	C1qtnf5	Ctrp5	C1q and tumor necrosis factor related protein 5	protein-coding	0.010000	0.577114	
mm_36258.1	chr4	63410651	63410851	-	1	NA	NA	NA	-7306	NM_001045514	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.065000	0.631841	
mm_53563.1	chr6	137252212	137252412	+	1	NA	NA	NA	13	NM_011216	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.050000	0.661692	
mm_45108.1	chr5	45444499	45444699	-	1	NA	NA	NA	5630	NM_024236	110391	Mm.30204	NM_024236	ENSMUSG00000015806	Qdpr	2610008L04Rik|D5Ertd371e|Dhpr|PKU2	quinoid dihydropteridine reductase	protein-coding	0.020000	0.502488	
mm_95527.1	chr11	52232106	52232306	+	1	NA	NA	NA	211	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.115000	0.711443	
mm_173352.1	chrY	90813795	90813995	+	1	NA	NA	NA	25511	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.467662	
mm_156887.1	chrX	166372572	166372772	+	1	NA	NA	NA	28119	NM_001177960	14758	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	0.010000	0.532338	
mm_105872.1	chr11	114890125	114890325	-	1	NA	NA	NA	184	NM_170758	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.055000	0.567164	
mm_19089.1	chr2	79257944	79258144	-	1	NA	NA	NA	2618	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.005000	0.412935	
mm_93954.1	chr10	127263052	127263252	-	1	NA	NA	NA	211	NM_008447	16572	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	0.120000	0.716418	
mm_172583.1	chr8	122841481	122841681	+	1	NA	NA	NA	-6793	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.065000	0.641791	
mm_92424.1	chr10	77085252	77085452	-	1	NA	NA	NA	28353	NM_001109991	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.030000	0.542289	
mm_17415.1	chr2	27248212	27248412	-	1	NA	NA	NA	-1009	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.005000	0.517413	
mm_59361.1	chr7	25687271	25687471	+	1	NA	NA	NA	369	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.070000	0.606965	
mm_56169.1	chr6	88000209	88000409	-	1	NA	NA	NA	18626	NR_026990	434064	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	0.025000	0.492537	
mm_83852.1	chr9	54559993	54560193	-	1	NA	NA	NA	-14	NM_019686	56506	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	0.110000	0.711443	
mm_51146.1	chr6	70607303	70607503	+	1	NA	NA	NA	184772	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.487562	
mm_127588.1	chr15	102331876	102332076	+	1	NA	NA	NA	267	NM_021713	60315	Mm.251638	NM_021713	ENSMUSG00000001285	Myg1	0610023A07Rik|2810433J21Rik|5830429P19Rik|AI325965|Gamm1	melanocyte proliferating gene 1	protein-coding	0.085000	0.621891	
mm_148496.1	chr19	4171488	4171688	+	1	NA	NA	NA	3891	NM_134148	107239	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	0.035000	0.631841	
mm_3878.1	chr1	161034812	161035012	+	1	NA	NA	NA	-254	NR_002840	14455	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	0.095000	0.716418	
mm_425.1	chr1	34459685	34459885	+	1	NA	NA	NA	39	NM_011206	19253	Mm.361	NM_011206	ENSMUSG00000026126	Ptpn18	FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1	protein tyrosine phosphatase, non-receptor type 18	protein-coding	0.055000	0.597015	
mm_7465.1	chr1	120478941	120479141	-	1	NA	NA	NA	26043	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.015000	0.567164	
mm_116842.1	chr13	54691690	54691890	-	1	NA	NA	NA	2170	NR_027395	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.000000	0.422886	
mm_9721.1	chr1	179803773	179803973	-	1	NA	NA	NA	142	NM_026375	226747	Mm.128165	NM_026375	ENSMUSG00000026491	Ahctf1	6230412P20Rik|AV011447|Elys	AT hook containing transcription factor 1	protein-coding	0.075000	0.567164	
mm_5309.1	chr1	22398584	22398784	-	1	NA	NA	NA	34159	NM_053270	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.055000	0.557214	
mm_25122.1	chr3	102012336	102012536	+	1	NA	NA	NA	2291	NM_178777	18072	Mm.137286	NM_178777	ENSMUSG00000048540	Nhlh2	6230401I09Rik|Hen2|NSCL2|Nscl-2|bHLHa34	nescient helix loop helix 2	protein-coding	0.045000	0.621891	
mm_49747.1	chr6	34745989	34746189	+	1	NA	NA	NA	-34343	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.025000	0.507463	
mm_45624.1	chr5	76182394	76182594	-	1	NA	NA	NA	-1386	NM_011626	21982	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0.010000	0.552239	
mm_44002.1	chr5	146948578	146948778	+	1	NA	NA	NA	21	NM_025652	66596	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0.135000	0.736318	
mm_139965.1	chr17	71673137	71673337	+	1	NA	NA	NA	-24	NM_177087	320159	Mm.187372	NM_177087	ENSMUSG00000045761	Fam179a	4632412N22Rik	family with sequence similarity 179, member A	protein-coding	0.025000	0.567164	
mm_28071.1	chr3	84304554	84304754	-	1	NA	NA	NA	121	NM_001271726	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.055000	0.562189	
mm_34582.1	chr4	150142186	150142386	+	1	NA	NA	NA	-6686	NM_001085529	435818	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	OTTMUSG00000010396	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0.015000	0.507463	
mm_29508.1	chr3	116253322	116253522	-	1	NA	NA	NA	62	NM_022427	64378	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.020000	0.582090	
mm_99915.1	chr11	110180067	110180267	+	1	NA	NA	NA	-12014	NM_147220	217262	Mm.291459	NM_147220	ENSMUSG00000041797	Abca9	D630040K07Rik	ATP-binding cassette, sub-family A (ABC1), member 9	protein-coding	0.045000	0.532338	
mm_102571.1	chr11	61579224	61579424	-	1	NA	NA	NA	363	NM_010148	13855	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0.100000	0.721393	
mm_161378.1	chr14	70078857	70079057	+	1	NA	NA	NA	1162	NM_001289927	13655	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.050000	0.557214	
mm_15856.1	chr2	164785933	164786133	+	1	NA	NA	NA	12	NM_133924	101113	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	0.110000	0.786070	
mm_108365.1	chr12	80793247	80793447	+	1	NA	NA	NA	2815	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.000000	0.398010	
mm_92536.1	chr10	79613934	79614134	-	1	NA	NA	NA	-9	NM_001168624	237397	Mm.334207	NM_198614	ENSMUSG00000045912	C2cd4c	4932409I22Rik|Fam148c|Gm238	C2 calcium-dependent domain containing 4C	protein-coding	0.135000	0.706468	
mm_14747.1	chr2	144527656	144527856	+	1	NA	NA	NA	11	NM_029763	70408	Mm.389351	NM_029763	ENSMUSG00000027427	Polr3f	2810411G20Rik|3010019O03Rik|3110032A07Rik|RPC39|RPC6	polymerase (RNA) III (DNA directed) polypeptide F	protein-coding	0.115000	0.676617	
mm_25443.1	chr3	108200514	108200714	+	1	NA	NA	NA	220	NM_028061	72023	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	0.055000	0.651741	
mm_84309.1	chr9	63666734	63666934	-	1	NA	NA	NA	64179	NM_025857	66939	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.020000	0.532338	-82(CCTTTTAGAGTG,+,0.00)
mm_160268.1	chr7	115801409	115801609	-	1	NA	NA	NA	100	NM_001277328	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.010000	0.517413	
mm_124511.1	chr14	121915884	121916084	-	1	NA	NA	NA	-210	NM_182806	110168	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	0.010000	0.422886	
mm_94897.1	chr11	29172819	29173019	+	1	NA	NA	NA	12	NM_134034	104570	Mm.276386	NM_134034	ENSMUSG00000020463	Smek2	AW011752|AW557776|Ppp4r3b|mKIAA1387	SMEK homolog 2, suppressor of mek1 (Dictyostelium)	protein-coding	0.105000	0.621891	
mm_92648.1	chr10	80398175	80398375	-	1	NA	NA	NA	1256	NM_013595	17192	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.005000	0.402985	
mm_105190.1	chr11	101986909	101987109	-	1	NA	NA	NA	-47	NM_029287	75437	Mm.108632	NM_029287	ENSMUSG00000010841	1700006E09Rik	-	RIKEN cDNA 1700006E09 gene	protein-coding	0.010000	0.457711	
mm_75113.1	chr8	34156483	34156683	-	1	NA	NA	NA	2020	NM_026432	67887	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	0.005000	0.437811	
mm_107268.1	chr12	29528544	29528744	+	1	NA	NA	NA	260	NM_008666	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.015000	0.502488	
mm_123024.1	chr14	55116526	55116726	-	1	NA	NA	NA	309	NM_177049	319984	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.020000	0.651741	
mm_164520.1	chr16	97423604	97423804	+	1	NA	NA	NA	39201	NM_010846	17857	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.000000	0.432836	
mm_120025.1	chr14	55784049	55784249	+	1	NA	NA	NA	-130	NM_080435	104110	Mm.287010	NM_080435	ENSMUSG00000022220	Adcy4	mKIAA4004	adenylate cyclase 4	protein-coding	0.065000	0.597015	
mm_140074.1	chr17	75165079	75165279	+	1	NA	NA	NA	-13602	NM_001331236	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.025000	0.432836	
mm_56369.1	chr6	93913503	93913703	-	1	NA	NA	NA	87	NM_001286788	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.035000	0.502488	-32(GCTTAAATACAG,+,0.00),16(TGATATAAAAGG,-,0.00)
mm_145769.1	chr18	65023732	65023932	+	1	NA	NA	NA	305	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.020000	0.562189	
mm_2507.1	chr1	106213573	106213773	+	1	NA	NA	NA	41804	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.010000	0.383085	
mm_109714.1	chr12	114932300	114932500	+	1	NA	NA	NA	-418706	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.005000	0.477612	
mm_28439.1	chr3	90490686	90490886	-	1	NA	NA	NA	227	NM_133854	20615	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	0.060000	0.601990	
mm_133497.1	chr16	90386318	90386518	+	1	NA	NA	NA	21	NM_015755	26559	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.140000	0.805970	
mm_104030.1	chr11	86232063	86232263	-	1	NA	NA	NA	25405	NM_027421	70422	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0.020000	0.502488	
mm_120683.1	chr14	70659273	70659473	+	1	NA	NA	NA	-6289	NM_181345	328440	Mm.347749	NM_181345	ENSMUSG00000047911	Npm2	-	nucleophosmin/nucleoplasmin 2	protein-coding	0.075000	0.631841	
mm_33205.1	chr4	126412720	126412920	+	1	NA	NA	NA	16722	NM_153402	214150	Mm.440915	NM_153402	ENSMUSG00000028842	Ago3	AW048688|C130014L07Rik|Eif2c3	argonaute RISC catalytic subunit 3	protein-coding	0.010000	0.462687	-35(GAGTATAAATAG,-,0.00)
mm_87245.1	chr10	40938096	40938296	+	1	NA	NA	NA	54662	NM_031877	83767	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	0.025000	0.353234	
mm_124289.1	chr14	103054459	103054659	-	1	NA	NA	NA	7547	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.030000	0.557214	
mm_57297.1	chr6	124464578	124464778	-	1	NA	NA	NA	106	NM_153508	232370	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.030000	0.582090	
mm_134168.1	chr16	10796271	10796471	-	1	NA	NA	NA	452	NM_013637	19118	Mm.42733	NM_013637	ENSMUSG00000022501	Prm1	Prm-1	protamine 1	protein-coding	0.030000	0.492537	
mm_15029.1	chr2	152694900	152695100	+	1	NA	NA	NA	7852	NM_025543	66405	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	0.020000	0.582090	
mm_28028.1	chr3	83046685	83046885	-	1	NA	NA	NA	3078	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.045000	0.572139	
mm_172746.1	chr8	80739379	80739579	-	1	NA	NA	NA	-20	NM_053124	93762	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.090000	0.641791	
mm_4616.1	chr1	178739891	178740091	+	1	NA	NA	NA	210866	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.020000	0.328358	
mm_137168.1	chr17	23812271	23812471	+	1	NA	NA	NA	9184	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.005000	0.407960	
mm_148546.1	chr19	4711250	4711450	+	1	NA	NA	NA	127	NM_021287	20743	Mm.329668	NM_021287	ENSMUSG00000067889	Sptbn2	Spnb3|mKIAA0302	spectrin beta, non-erythrocytic 2	protein-coding	0.035000	0.517413	
mm_40640.1	chr5	64910199	64910399	+	1	NA	NA	NA	22400	NM_030682	21897	Mm.273024	NM_030682	ENSMUSG00000044827	Tlr1	-	toll-like receptor 1	protein-coding	0.015000	0.487562	-67(GCTTTACAAGCC,+,0.00)
mm_64987.1	chr7	16916266	16916466	-	1	NA	NA	NA	7666	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.050000	0.651741	
mm_115748.1	chr13	18031521	18031721	-	1	NA	NA	NA	-38270	NM_025904	67008	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0.025000	0.457711	-31(GTCTTTAAAAAA,-,0.00)
mm_131871.1	chr16	23175264	23175464	+	1	NA	NA	NA	28828	NM_009605	11450	Mm.3969	NM_009605	ENSMUSG00000022878	Adipoq	30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1	adiponectin, C1Q and collagen domain containing	protein-coding	0.005000	0.452736	
mm_79514.1	chr9	57521174	57521374	+	1	NA	NA	NA	42	NM_007747	12858	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.150000	0.731343	
mm_149604.1	chr19	16349522	16349722	+	1	NA	NA	NA	-34618	NR_105832	102465218		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.010000	0.343284	
mm_70469.1	chr8	12323552	12323752	+	1	NA	NA	NA	-62119	NR_027975	434280	Mm.447484	NM_001013812	ENSMUSG00000047935	Gm5607	EG434280	predicted gene 5607	ncRNA	0.010000	0.457711	-92(TCTTTTATACCA,+,0.00)
mm_148581.1	chr19	5024072	5024272	+	1	NA	NA	NA	166	NM_007854	13340	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	0.100000	0.676617	
mm_97412.1	chr11	77977653	77977853	+	1	NA	NA	NA	-5063	NM_174852	268448	Mm.274329	NM_174852	ENSMUSG00000037791	Phf12	2410142K10Rik|F630045O13|PF1|mKIAA1523	PHD finger protein 12	protein-coding	0.025000	0.507463	
mm_170426.1	chr1	87326968	87327168	+	1	NA	NA	NA	70	NM_001110212	227331	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	0.120000	0.701493	
mm_139153.1	chr17	47540320	47540520	+	1	NA	NA	NA	35369	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.010000	0.507463	
mm_152752.1	chr19	20116565	20116765	-	1	NA	NA	NA	274006	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.000000	0.248756	
mm_50586.1	chr6	49059143	49059343	+	1	NA	NA	NA	-14552	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.020000	0.457711	
mm_60024.1	chr7	30832720	30832920	+	1	NA	NA	NA	-9045	NM_146187	233079	Mm.97338	NM_146187	ENSMUSG00000051314	Ffar2	GPCR43|Gpr43	free fatty acid receptor 2	protein-coding	0.030000	0.582090	
mm_38207.1	chr4	135873693	135873893	-	1	NA	NA	NA	53	NM_026383	52830	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.090000	0.616915	
mm_67891.1	chr7	99478498	99478698	-	1	NA	NA	NA	1109	NR_002173	449631	Mm.236868	NR_002173	ENSMUSG00000064966	Snord15b	Gm5775|Rnu15-b|Rnu15b|U15B	small nucleolar RNA, C/D box 14B	snoRNA	0.005000	0.442786	
mm_143095.1	chr17	57080626	57080826	-	1	NA	NA	NA	-2216	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.035000	0.562189	
mm_63436.1	chr7	127479002	127479202	+	1	NA	NA	NA	-6119	NM_010183	14123	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.115000	0.736318	-33(CTGTTTTAAAGA,-,0.00)
mm_99659.1	chr11	105731721	105731921	+	1	NA	NA	NA	141835	NM_181071	77097	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.025000	0.457711	
mm_144767.1	chr18	35772055	35772255	+	1	NA	NA	NA	596	NM_019912	56550	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0.095000	0.711443	
mm_80592.1	chr9	85842793	85842993	+	1	NA	NA	NA	41	NM_001164792	21983	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	0.075000	0.721393	
mm_62389.1	chr7	100943452	100943652	+	1	NA	NA	NA	-11391	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.010000	0.567164	
mm_133459.1	chr16	89132757	89132957	+	1	NA	NA	NA	-68855	NM_001276278	68637	Mm.384089	NM_001276278	ENSMUSG00000068073	1110025L11Rik	-	RIKEN cDNA 1110025L11 gene	protein-coding	0.005000	0.442786	-33(GTGTATAAAAGG,-,0.00)
mm_138612.1	chr17	35808289	35808489	+	1	NA	NA	NA	-13324	NM_133662	15937	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0.025000	0.467662	37(TTTTTAATAGGC,+,0.00)
mm_101430.1	chr11	30025835	30026035	-	1	NA	NA	NA	98	NM_146016	237711	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0.070000	0.671642	
mm_15446.1	chr2	157367512	157367712	+	1	NA	NA	NA	18	NM_026968	69161	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	0.125000	0.671642	
mm_100983.1	chr11	7213347	7213547	-	1	NA	NA	NA	476	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding	0.110000	0.716418	
mm_79017.1	chr9	45841017	45841217	+	1	NA	NA	NA	2572	NM_011792	23821	Mm.24044	NM_011792	ENSMUSG00000032086	Bace1	ASP2|Bace|C76936	beta-site APP cleaving enzyme 1	protein-coding	0.015000	0.606965	
mm_22940.1	chr3	31902573	31902773	+	1	NA	NA	NA	-30	NM_028231	72413	Mm.64790	NM_028231	ENSMUSG00000037610	Kcnmb2	2700049B16Rik|3110031N04Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 2	protein-coding	0.030000	0.442786	-32(CGCTTTTAAAAA,-,0.00),-31(GCTTTTAAAAAC,+,0.00),-31(GCTTTTAAAAAC,-,0.00)
mm_93655.1	chr10	117689773	117689973	-	1	NA	NA	NA	20885	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.005000	0.343284	
mm_153115.1	chr19	33108104	33108304	-	1	NA	NA	NA	284091	NM_001167818	67795	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	0.015000	0.552239	-90(TCTTTTAAACAG,+,0.00)
mm_20782.1	chr2	143988969	143989169	-	1	NA	NA	NA	22194	NM_133626	81910	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.000000	0.577114	
mm_149338.1	chr19	10850221	10850421	+	1	NA	NA	NA	7777	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.010000	0.487562	
mm_30045.1	chr3	135839650	135839850	-	1	NA	NA	NA	519	NR_040540	71038	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	0.045000	0.527363	
mm_108028.1	chr12	73720499	73720699	+	1	NA	NA	NA	135803	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.005000	0.472637	
mm_82794.1	chr9	29411761	29411961	-	1	NA	NA	NA	551268	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.090000	0.636816	
mm_51703.1	chr6	86628133	86628333	+	1	NA	NA	NA	59	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.025000	0.616915	
mm_9232.1	chr1	171280885	171281085	-	1	NA	NA	NA	201	NM_008911	19044	Mm.266888	NM_008911	ENSMUSG00000062729	Ppox	Ppo	protoporphyrinogen oxidase	protein-coding	0.055000	0.562189	
mm_87976.1	chr10	63638206	63638406	+	1	NA	NA	NA	180795	NM_001164376	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.010000	0.517413	
mm_50198.1	chr6	42038287	42038487	+	1	NA	NA	NA	-7	NM_009299	20939	Mm.4119	NM_009299	ENSMUSG00000023289	Sva	-	seminal vesicle antigen	protein-coding	0.000000	0.437811	
mm_99248.1	chr11	101082603	101082803	+	1	NA	NA	NA	138	NM_001305982	71743	Mm.182271	NM_027896	ENSMUSG00000001755	Coasy	1300003G02Rik|Dpck|Ppat|Ukr1	Coenzyme A synthase	protein-coding	0.060000	0.592040	
mm_148507.1	chr19	4214271	4214471	+	1	NA	NA	NA	-18	NM_001310039	56708	Mm.347919	NM_019952	ENSMUSG00000040663	Clcf1	BSF-3|Bsf3|CLC|NNT-1	cardiotrophin-like cytokine factor 1	protein-coding	0.080000	0.552239	20(GATTATTAAAGC,-,0.00)
mm_23183.1	chr3	40949735	40949935	+	1	NA	NA	NA	-796	NM_001040399	214048	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0.150000	0.771144	
mm_166091.1	chr4	140131740	140131940	+	1	NA	NA	NA	114971	NM_198610	230868	Mm.298731	NM_198610	ENSMUSG00000040972	Igsf21	BC055811|Gm141	immunoglobulin superfamily, member 21	protein-coding	0.010000	0.532338	
mm_67854.1	chr7	98702788	98702988	-	1	NA	NA	NA	40	NR_144495	100040769	Mm.126401	NR_144495		Gm15506	OTTMUSG00000023003	predicted gene 15506	ncRNA	0.085000	0.587065	
mm_76951.1	chr8	105991624	105991824	-	1	NA	NA	NA	49	NM_001301204	319446	Mm.248357	NM_176913	ENSMUSG00000053687	Dpep2	F630103D06Rik|MBD-2	dipeptidase 2	protein-coding	0.010000	0.592040	
mm_51088.1	chr6	67052857	67053057	+	1	NA	NA	NA	-15550	NM_007836	13197	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.005000	0.378109	
mm_127320.1	chr15	100297040	100297240	+	1	NA	NA	NA	-7677	NM_027334	70152	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	0.040000	0.532338	
mm_67505.1	chr7	80782089	80782289	-	1	NA	NA	NA	21142	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.020000	0.457711	
mm_138480.1	chr17	35194960	35195160	+	1	NA	NA	NA	88	NR_105939	102465588		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	0.020000	0.572139	
mm_24609.1	chr3	93446139	93446339	+	1	NA	NA	NA	3909	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.085000	0.621891	
mm_117332.1	chr13	68999332	68999532	-	1	NA	NA	NA	109	NM_153534	210044	Mm.390617	NM_153534	ENSMUSG00000021536	Adcy2	mKIAA1060	adenylate cyclase 2	protein-coding	0.165000	0.840796	
mm_80176.1	chr9	72274846	72275046	+	1	NA	NA	NA	58	NM_001311105	235469	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	0.105000	0.741294	
mm_55076.1	chr6	49111028	49111228	-	1	NA	NA	NA	37333	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.005000	0.462687	
mm_73753.1	chr8	114815494	114815694	+	1	NA	NA	NA	375942	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.005000	0.477612	
mm_126483.1	chr15	81586503	81586703	+	1	NA	NA	NA	389	NM_177821	328572	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.085000	0.597015	
mm_64583.1	chr7	145300758	145300958	+	1	NA	NA	NA	-51	NM_145379	211577	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	0.030000	0.601990	
mm_135597.1	chr16	50732591	50732791	-	1	NA	NA	NA	82	NR_028300	68190	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0.105000	0.606965	
mm_168113.1	chr10	15063705	15063905	+	1	NA	NA	NA	303516	NM_008703	18101	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.035000	0.432836	
mm_152970.1	chr19	29386603	29386803	-	1	NA	NA	NA	19265	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.537313	
mm_69750.1	chr7	140955879	140956079	-	1	NA	NA	NA	-18	NM_030694	80876	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.020000	0.522388	
mm_153776.1	chr19	45749470	45749670	-	1	NA	NA	NA	-7	NM_008723	18150	Mm.1406	NM_008723	ENSMUSG00000056209	Npm3	Nub1	nucleoplasmin 3	protein-coding	0.125000	0.711443	-51(CTCCTTTAATGG,-,0.00),-49(CCTTTAATGGGC,+,0.00)
mm_42322.1	chr5	114897698	114897898	+	1	NA	NA	NA	864	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.015000	0.542289	
mm_96059.1	chr11	59566307	59566507	+	1	NA	NA	NA	5331	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.020000	0.542289	
mm_103837.1	chr11	83020716	83020916	-	1	NA	NA	NA	-6	NM_181545	276950	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0.015000	0.497512	54(GCTTTTCTGGAC,+,0.00)
mm_19927.1	chr2	116064478	116064678	-	1	NA	NA	NA	41	NM_001346044	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.075000	0.572139	
mm_104425.1	chr11	94938155	94938355	-	1	NA	NA	NA	2031	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.025000	0.447761	
mm_112659.1	chr13	16026840	16027040	+	1	NA	NA	NA	15089	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.015000	0.547264	
mm_62879.1	chr7	114753712	114753912	+	1	NA	NA	NA	8046	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	0.000000	0.462687	
mm_89964.1	chr10	111298610	111298810	+	1	NA	NA	NA	31	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.115000	0.661692	
mm_90788.1	chr10	7054870	7055070	-	1	NA	NA	NA	-31785	NM_001033391	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.010000	0.452736	
mm_32173.1	chr4	100479060	100479260	+	1	NA	NA	NA	293	NM_001033773	381534	Mm.318133	NM_001033773	ENSMUSG00000069733	Ube2u	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding	0.020000	0.462687	
mm_35059.1	chr4	6452517	6452717	-	1	NA	NA	NA	1654	NM_010945	18201	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.010000	0.467662	
mm_44070.1	chr5	148678816	148679016	+	1	NA	NA	NA	-62924	NR_028285	70138	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.025000	0.482587	-43(TTGTATAAAAAC,-,0.00)
mm_78585.1	chr9	37367241	37367441	+	1	NA	NA	NA	-265	NM_175189	72927	Mm.266133	NM_175189	ENSMUSG00000046240	Hepacam	2900042E01Rik|Glialcam|Hepn1	hepatocyte cell adhesion molecule	protein-coding	0.010000	0.482587	
mm_127822.1	chr15	5121084	5121284	-	1	NA	NA	NA	2763	NR_028091	100302529		NR_028091		Snord72	MBII-240	small nucleolar RNA, C/D box 72	snoRNA	0.025000	0.462687	66(TGCTCTAAAAAC,-,0.00)
mm_84411.1	chr9	65562056	65562256	-	1	NA	NA	NA	17931	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.015000	0.651741	
mm_73797.1	chr8	117265982	117266182	+	1	NA	NA	NA	9063	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.010000	0.422886	
mm_101379.1	chr11	23771147	23771347	-	1	NA	NA	NA	-277	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.130000	0.696517	
mm_116459.1	chr13	43304083	43304283	-	1	NA	NA	NA	-11	NM_001033399	328232	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	0.135000	0.721393	
mm_102474.1	chr11	60031808	60032008	-	1	NA	NA	NA	5097	NM_008819	18618	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	0.010000	0.502488	
mm_129519.1	chr15	79109331	79109531	-	1	NA	NA	NA	448	NM_177461	27008	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	0.130000	0.736318	
mm_167732.1	chr9	105316265	105316465	+	1	NA	NA	NA	78922	NM_172461	208583	Mm.347509	NM_172461	ENSMUSG00000035032	Nek11	4932416N14Rik	NIMA (never in mitosis gene a)-related expressed kinase 11	protein-coding	0.025000	0.567164	
mm_146333.1	chr18	81387599	81387799	+	1	NA	NA	NA	-401121	NM_178280	20689	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	sal-like 3 (Drosophila)	protein-coding	0.010000	0.527363	
mm_119732.1	chr14	54113233	54113433	+	1	NA	NA	NA	140596	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.457711	
mm_90112.1	chr10	117277355	117277555	+	1	NA	NA	NA	4817	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.010000	0.432836	
mm_32973.1	chr4	120096469	120096669	+	1	NA	NA	NA	-64637	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.010000	0.527363	
mm_114898.1	chr13	94407740	94407940	+	1	NA	NA	NA	48880	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.000000	0.437811	
mm_135886.1	chr16	64771065	64771265	-	1	NA	NA	NA	-226	NM_026273	67609	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	0.070000	0.636816	
mm_134399.1	chr16	17531038	17531238	-	1	NA	NA	NA	-86	NM_026909	69009	Mm.10174	NM_026909	ENSMUSG00000022760	Thap7	1810004B07Rik	THAP domain containing 7	protein-coding	0.110000	0.646766	
mm_21628.1	chr2	164277146	164277346	-	1	NA	NA	NA	1061	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.020000	0.442786	
mm_109378.1	chr12	109705692	109705892	+	1	NA	NA	NA	-3268	NR_029880	723858		NR_029880	ENSMUSG00000065498	Mir379	Mirn379|mir-379|mmu-mir-379	microRNA 379	ncRNA	0.010000	0.338308	
mm_153131.1	chr19	34241570	34241770	-	1	NA	NA	NA	13703	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.035000	0.527363	
mm_114967.1	chr13	97137890	97138090	+	1	NA	NA	NA	53	NM_001271464	320806	Mm.219675	NM_177266	ENSMUSG00000021666	Gfm2	6530419G12Rik|A930009M04Rik|EF-G2mt|EFG2|MST027|RRF2mt	G elongation factor, mitochondrial 2	protein-coding	0.065000	0.572139	
mm_117683.1	chr13	94246453	94246653	-	1	NA	NA	NA	38728	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.010000	0.467662	
mm_26876.1	chr3	17714550	17714750	-	1	NA	NA	NA	-75271	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.005000	0.348259	
mm_171515.1	chr4	146501920	146502120	+	1	NA	NA	NA	20	NM_001243138	100041433	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247|OTTMUSG00000011075	zinc finger protein 981	protein-coding	0.020000	0.502488	
mm_169776.1	chr1	60900836	60901036	+	1	NA	NA	NA	-8089	NM_009843	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.050000	0.562189	
mm_15180.1	chr2	154190719	154190919	+	1	NA	NA	NA	1	NM_001012392	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.025000	0.592040	
mm_59877.1	chr7	30291675	30291875	+	1	NA	NA	NA	22	NM_001081114	76686	Mm.159258	NM_001081114	ENSMUSG00000013921	Clip3	1500005P14Rik|AI844915|Clipr-59	CAP-GLY domain containing linker protein 3	protein-coding	0.055000	0.651741	
mm_2303.1	chr1	91539916	91540116	+	1	NA	NA	NA	-549	NM_001039126	65247	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	0.040000	0.597015	
mm_167353.1	chr8	83742460	83742660	+	1	NA	NA	NA	-1249	NM_001163031	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.010000	0.398010	
mm_121280.1	chr14	103827105	103827305	+	1	NA	NA	NA	16496	NM_007904	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.015000	0.398010	
mm_172197.1	chr6	51466451	51466651	-	1	NA	NA	NA	3343	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.005000	0.348259	
mm_46197.1	chr5	98030646	98030846	-	1	NA	NA	NA	216	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.050000	0.656716	
mm_124892.1	chr15	10314024	10314224	+	1	NA	NA	NA	20473	NM_001253782	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.010000	0.462687	
mm_22427.1	chr2	181598937	181599137	-	1	NA	NA	NA	110	NM_172676	229011	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	0.130000	0.741294	
mm_165482.1	chr2	164333369	164333569	+	1	NA	NA	NA	704	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.035000	0.472637	
mm_91207.1	chr10	21161453	21161653	-	1	NA	NA	NA	-569	NM_010848	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.025000	0.447761	
mm_66977.1	chr7	63936226	63936426	-	1	NA	NA	NA	2589	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.050000	0.562189	
mm_29056.1	chr3	103776710	103776910	-	1	NA	NA	NA	14465	NM_001301306	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.000000	0.298507	
mm_126812.1	chr15	87654932	87655132	+	1	NA	NA	NA	29802	NM_134096	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.010000	0.502488	
mm_161385.1	chr14	75197947	75198147	+	1	NA	NA	NA	-44240	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.025000	0.512438	-46(CCTCTAATAGAC,+,0.00)
mm_96653.1	chr11	69368240	69368440	+	1	NA	NA	NA	1086	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.040000	0.626866	
mm_114870.1	chr13	94068454	94068654	+	1	NA	NA	NA	10758	NM_172589	218454	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.000000	0.422886	
mm_95550.1	chr11	52307715	52307915	+	1	NA	NA	NA	-24801	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.010000	0.601990	
mm_13752.1	chr2	118126421	118126621	+	1	NA	NA	NA	14645	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.000000	0.348259	
mm_39449.1	chr5	17574423	17574623	+	1	NA	NA	NA	-293	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.090000	0.681592	-96(GCTTTTCAAGAG,+,0.00)
mm_91943.1	chr10	60831400	60831600	-	1	NA	NA	NA	81	NM_029770	107449	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0.165000	0.766169	
mm_15960.1	chr2	166009519	166009719	+	1	NA	NA	NA	16982	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.005000	0.388060	
mm_88225.1	chr10	70440558	70440758	+	1	NA	NA	NA	-10	NM_001143777	71721	Mm.477813	NM_024244	ENSMUSG00000043259	Fam13c	1200015N20Rik|C030038O19Rik|mKIAA1796	family with sequence similarity 13, member C	protein-coding	0.030000	0.626866	
mm_31458.1	chr4	48898462	48898662	+	1	NA	NA	NA	-160900	NM_178756	272031	Mm.299460	NM_178756	ENSMUSG00000063446	Plppr1	E130309F12Rik|Lppr1|PRG-3|mKIAA4247	phospholipid phosphatase related 1	protein-coding	0.000000	0.477612	
mm_136555.1	chr17	3114895	3115095	+	1	NA	NA	NA	23	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.135000	0.726368	
mm_121510.1	chr14	121962030	121962230	+	1	NA	NA	NA	3063	NM_183031	321019	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.020000	0.567164	
mm_125484.1	chr15	54600826	54601026	+	1	NA	NA	NA	29560	NM_178920	105853	Mm.410994	NM_178920	ENSMUSG00000024479	Mal2	AI461653	mal, T cell differentiation protein 2	protein-coding	0.005000	0.343284	29(CTTTTTAAATGC,+,0.00)
mm_107743.1	chr12	58413172	58413372	+	1	NA	NA	NA	-144014	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	0.010000	0.422886	
mm_13428.1	chr2	104816952	104817152	+	1	NA	NA	NA	-356	NM_001123327	99003	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	0.140000	0.756219	
mm_54348.1	chr6	30806698	30806898	-	1	NA	NA	NA	65499	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.005000	0.323383	
mm_24471.1	chr3	90668970	90669170	+	1	NA	NA	NA	-1	NM_013650	20201	Mm.21567	NM_013650	ENSMUSG00000056054	S100a8	60B8Ag|AI323541|B8Ag|CFAg|CP-10|Caga|MRP8|p8	S100 calcium binding protein A8 (calgranulin A)	protein-coding	0.025000	0.527363	-32(CTCTATAAAAGC,-,0.00)
mm_116995.1	chr13	56548410	56548610	-	1	NA	NA	NA	28	NM_010702	16841	Mm.16973	NM_010702	ENSMUSG00000021539	Lect2	-	leukocyte cell-derived chemotaxin 2	protein-coding	0.035000	0.477612	
mm_97194.1	chr11	75576931	75577131	+	1	NA	NA	NA	-11048	NM_008850	18738	Mm.3128	NM_008850	ENSMUSG00000017781	Pitpna	Pitpn|vb|vibrator	phosphatidylinositol transfer protein, alpha	protein-coding	0.020000	0.482587	
mm_173099.1	chrX	15262906	15263106	+	1	NA	NA	NA	-151517	NR_033171	67395	Mm.50369	NM_026128	ENSMUSG00000045217	Ppp1r2-ps9	4930403L05Rik	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 9	pseudo	0.020000	0.477612	
mm_84157.1	chr9	59530138	59530338	-	1	NA	NA	NA	-4737	NM_178388	73893	Mm.216135	NM_178388	ENSMUSG00000049526	Tmem202	4930425N13Rik	transmembrane protein 202	protein-coding	0.005000	0.492537	
mm_60261.1	chr7	43811346	43811546	+	1	NA	NA	NA	152	NM_011872	23993	Mm.251227	NM_011872	ENSMUSG00000030713	Klk7	Prss6|SCCE	kallikrein related-peptidase 7 (chymotryptic, stratum corneum)	protein-coding	0.020000	0.616915	-34(AGGTATAAAAGG,-,0.00)
mm_21172.1	chr2	154691155	154691355	-	1	NA	NA	NA	34229	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.015000	0.487562	
mm_21690.1	chr2	164443821	164444021	-	1	NA	NA	NA	-733	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.020000	0.427861	
mm_74392.1	chr8	3176623	3176823	-	1	NA	NA	NA	102894	NM_010568	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.025000	0.507463	
mm_59356.1	chr7	25680752	25680952	+	1	NA	NA	NA	-306	NM_172148	232987	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0.070000	0.646766	
mm_4521.1	chr1	175631920	175632120	+	1	NA	NA	NA	-173	NM_133809	98256	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	0.020000	0.422886	-56(TGCTATTTAAAC,-,0.00)
mm_167033.1	chr7	72910429	72910629	-	1	NA	NA	NA	191539	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	0.010000	0.427861	-72(AACTATTTAAGG,-,0.00)
mm_68811.1	chr7	125552055	125552255	-	1	NA	NA	NA	-127	NM_001008700	16190	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0.070000	0.597015	61(GCTTTTAAGTCC,+,0.00)
mm_157996.1	chrX	94540313	94540513	-	1	NA	NA	NA	1661	NM_019791	94275	Mm.27578	NM_019791	ENSMUSG00000025151	Maged1	2810433C11Rik|5430405L04Rik|DXBwg1492e|Dlixin|Dlxin-1|Dlxin1|MAGE-D1|NRAGE|mFLJ00163	melanoma antigen, family D, 1	protein-coding	0.010000	0.587065	65(GCTTTAAGGCCC,+,0.00)
mm_51307.1	chr6	72313510	72313710	+	1	NA	NA	NA	9000	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.015000	0.577114	
mm_52868.1	chr6	122315987	122316187	+	1	NA	NA	NA	7077	NM_010749	17113	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	0.010000	0.447761	
mm_144609.1	chr18	32431893	32432093	+	1	NA	NA	NA	-53709	NR_045403	402767	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.035000	0.587065	
mm_82262.1	chr9	6266449	6266649	-	1	NA	NA	NA	-2	NM_027942	71829	Mm.141452	NM_027942	ENSMUSG00000047619	Ddi1	1700011N24Rik	DNA-damage inducible 1	protein-coding	0.005000	0.497512	
mm_57103.1	chr6	122591046	122591246	-	1	NA	NA	NA	11298	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.040000	0.562189	
mm_91103.1	chr10	19116955	19117155	-	1	NA	NA	NA	-24694	NR_038021	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.010000	0.412935	
mm_126717.1	chr15	85336269	85336469	+	1	NA	NA	NA	-12	NM_016843	54138	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.080000	0.656716	
mm_153650.1	chr19	44378100	44378300	-	1	NA	NA	NA	29509	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.005000	0.597015	
mm_67878.1	chr7	99229528	99229728	-	1	NA	NA	NA	8983	NM_177448	233549	Mm.208030	NM_177448	ENSMUSG00000052396	Mogat2	DGAT2L5|MGAT2|Mgat1l	monoacylglycerol O-acyltransferase 2	protein-coding	0.010000	0.472637	
mm_157823.1	chrX	74085519	74085719	-	1	NA	NA	NA	71	NM_010788	17257	Mm.131408	NM_010788	ENSMUSG00000031393	Mecp2	1500041B07Rik|D630021H01Rik|Mbd5|WBP10	methyl CpG binding protein 2	protein-coding	0.155000	0.756219	
mm_114310.1	chr13	59733562	59733762	+	1	NA	NA	NA	12	NR_045977	75223	Mm.444771	NR_045977	ENSMUSG00000097502	4930528D03Rik	-	RIKEN cDNA 4930528D03 gene	ncRNA	0.015000	0.547264	
mm_55516.1	chr6	70172198	70172398	-	1	NA	NA	NA	619877	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.437811	
mm_153154.1	chr19	34252437	34252637	-	1	NA	NA	NA	2836	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.045000	0.577114	
mm_53440.1	chr6	134222838	134223038	+	1	NA	NA	NA	-173391	NM_025778	66813	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.025000	0.487562	
mm_96550.1	chr11	68888420	68888620	+	1	NA	NA	NA	-33	NM_177060	320040	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	0.015000	0.611940	
mm_144038.1	chr17	90143962	90144162	-	1	NA	NA	NA	-55694	NM_001347419	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.000000	0.417910	
mm_140478.1	chr17	94864842	94865042	+	1	NA	NA	NA	24	NM_001024731	100044193		NM_001024731	ENSMUSG00000095193	Gm20939	-	predicted gene, 20939	protein-coding	0.035000	0.557214	
mm_27985.1	chr3	81975651	81975851	-	1	NA	NA	NA	-23	NM_019911	56720	Mm.258622	NM_019911	ENSMUSG00000028011	Tdo2	AA407491|TDO|TO|chky	tryptophan 2,3-dioxygenase	protein-coding	0.015000	0.487562	
mm_7419.1	chr1	119526292	119526492	-	1	NA	NA	NA	238	NM_146103	226351	Mm.439806	NM_146103	ENSMUSG00000098923	Tmem185b	2500001K11Rik	transmembrane protein 185B	protein-coding	0.120000	0.691542	
mm_119370.1	chr14	41122480	41122680	+	1	NA	NA	NA	-9208	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.025000	0.532338	
mm_66698.1	chr7	45920532	45920732	-	1	NA	NA	NA	217	NM_001146346	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.020000	0.592040	
mm_129233.1	chr15	76616731	76616931	-	1	NA	NA	NA	21	NM_028064	72027	Mm.276829	NM_028064	ENSMUSG00000063354	Slc39a4	1600025H15Rik|AU041686|AWMS2|ZIP4	solute carrier family 39 (zinc transporter), member 4	protein-coding	0.020000	0.587065	
mm_98301.1	chr11	90030624	90030824	+	1	NA	NA	NA	376	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.050000	0.552239	
mm_81812.1	chr9	118040385	118040585	+	1	NA	NA	NA	-37	NM_001286508	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.115000	0.671642	15(CCCTATATAGTC,+,0.00)
mm_132292.1	chr16	33380676	33380876	+	1	NA	NA	NA	1	NM_011749	22661	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0.110000	0.691542	
mm_106860.1	chr12	8009188	8009388	+	1	NA	NA	NA	31611	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.432836	-62(GAGTATAAAAGT,-,0.00),59(GTCTTTATAGTC,+,0.00)
mm_161150.1	chr13	23465075	23465275	-	1	NA	NA	NA	726	NM_013483	12231	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0.025000	0.557214	
mm_20263.1	chr2	126675106	126675306	-	1	NA	NA	NA	386	NM_001271469	14391	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.115000	0.651741	
mm_12454.1	chr2	71214344	71214544	+	1	NA	NA	NA	2498	NM_010064	13427	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0.015000	0.363184	-16(TGCTTTTTAAGG,-,0.00),-14(CTTTTTAAGGTC,+,0.00),18(TGATTTAAAAGC,-,0.00)
mm_29029.1	chr3	102166342	102166542	-	1	NA	NA	NA	38251	NM_177545	229658	Mm.118004	NM_177545	ENSMUSG00000027860	Vangl1	Kitenin|Lpp2|Stb2|Stbm	vang-like 1 (van gogh, Drosophila)	protein-coding	0.020000	0.512438	
mm_134149.1	chr16	10784974	10785174	-	1	NA	NA	NA	462	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.100000	0.696517	
mm_143194.1	chr17	62609857	62610057	-	1	NA	NA	NA	271360	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.005000	0.323383	
mm_23895.1	chr3	83031547	83031747	+	1	NA	NA	NA	5494	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.040000	0.482587	
mm_45039.1	chr5	39644547	39644747	-	1	NA	NA	NA	-16	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.080000	0.676617	
mm_53146.1	chr6	125237660	125237860	+	1	NA	NA	NA	-733	NM_001286753	21940	Mm.367714	NM_001033126	ENSMUSG00000030336	Cd27	S152|Tnfrsf7|Tp55	CD27 antigen	protein-coding	0.005000	0.437811	-71(ATGTATAAAGGG,-,0.00),-40(CCTTATATAACT,+,0.00)
mm_70650.1	chr8	14353653	14353853	+	1	NA	NA	NA	257878	NM_172910	244310	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	discs, large (Drosophila) homolog-associated protein 2	protein-coding	0.000000	0.412935	
mm_163968.1	chr14	55003275	55003475	+	1	NA	NA	NA	-8826	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.025000	0.482587	
mm_131899.1	chr16	23250703	23250903	+	1	NA	NA	NA	24782	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.025000	0.437811	
mm_84316.1	chr9	63738956	63739156	-	1	NA	NA	NA	18938	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.030000	0.517413	-83(TGCCTTAAAAAC,-,0.00),-81(CCTTAAAAACAC,+,0.00)
mm_65357.1	chr7	25000541	25000741	-	1	NA	NA	NA	5296	NM_001290469	232975	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.030000	0.601990	
mm_76864.1	chr8	105482755	105482955	-	1	NA	NA	NA	-11433	NM_026481	67971	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0.000000	0.527363	
mm_76086.1	chr8	79399370	79399570	-	1	NA	NA	NA	-2	NM_008539	17125	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.135000	0.726368	
mm_12553.1	chr2	72442969	72443169	+	1	NA	NA	NA	-33150	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.005000	0.407960	
mm_25768.1	chr3	126106601	126106801	+	1	NA	NA	NA	-168151	NM_011674	22239	Mm.306021	NM_011674	ENSMUSG00000032854	Ugt8a	AI850488|AW455908|Cgt|Ugt8|mCerGT	UDP galactosyltransferase 8A	protein-coding	0.005000	0.407960	
mm_153621.1	chr19	43986439	43986639	-	1	NA	NA	NA	-19	NM_030703	93721	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	0.020000	0.502488	-99(CTCTTAAAAGCC,+,0.00)
mm_136440.1	chr16	94570664	94570864	-	1	NA	NA	NA	-143	NM_001113389	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.085000	0.746269	
mm_41364.1	chr5	90508340	90508540	+	1	NA	NA	NA	-10509	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.015000	0.422886	
mm_172642.1	chr8	25767684	25767884	-	1	NA	NA	NA	-13504	NM_028102	72108	Mm.246875	NM_028102	ENSMUSG00000061313	Ddhd2	2010305K11Rik|SAMWD1|mKIAA0725	DDHD domain containing 2	protein-coding	0.015000	0.417910	
mm_53418.1	chr6	133851838	133852038	+	1	NA	NA	NA	1729	NM_010594	16483	Mm.13052	NM_010594	ENSMUSG00000032758	Kap	AW146435|FKSG22	kidney androgen regulated protein	protein-coding	0.010000	0.477612	
mm_40663.1	chr5	65348296	65348496	+	1	NA	NA	NA	-15	NM_031180	83379	Mm.45274	NM_031180	ENSMUSG00000029195	Klb	AV071179|betaKlotho	klotho beta	protein-coding	0.025000	0.482587	
mm_62514.1	chr7	102222325	102222525	+	1	NA	NA	NA	-603	NR_111938	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.045000	0.587065	
mm_12138.1	chr2	61711725	61711925	+	1	NA	NA	NA	131	NM_021526	59029	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0.085000	0.636816	
mm_38096.1	chr4	134245425	134245625	-	1	NA	NA	NA	66	NM_024215	68040	Mm.300404	NM_024215	ENSMUSG00000028840	Zfp593	3110024A21Rik|AV062409|E130106C14Rik|ZNF593	zinc finger protein 593	protein-coding	0.100000	0.656716	
mm_153907.1	chr19	47138045	47138245	-	1	NA	NA	NA	149	NM_133746	72691	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	0.050000	0.517413	
mm_49260.1	chr6	17463792	17463992	+	1	NA	NA	NA	-65	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.135000	0.746269	
mm_134697.1	chr16	22656973	22657173	-	1	NA	NA	NA	158	NM_138650	110197	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0.080000	0.681592	
mm_134788.1	chr16	24013278	24013478	-	1	NA	NA	NA	-24766	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.005000	0.482587	
mm_124161.1	chr14	93635894	93636094	-	1	NA	NA	NA	252894	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.005000	0.308458	25(GTATTTTAAAGG,-,0.00)
mm_152726.1	chr19	18631689	18631889	-	1	NA	NA	NA	24	NM_017375	20409	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.125000	0.736318	
mm_150956.1	chr19	46369165	46369365	+	1	NA	NA	NA	12385	NM_029186	75146	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	0.005000	0.601990	
mm_55464.1	chr6	67535693	67535893	-	1	NA	NA	NA	29	NM_020047	56753	Mm.439913	NM_020047	ENSMUSG00000051397	Tacstd2	C80403|EGP-1|GA733-1|Ly97|TROP2	tumor-associated calcium signal transducer 2	protein-coding	0.020000	0.557214	-33(GCTTATAAGAGC,+,0.00)
mm_112806.1	chr13	20605349	20605549	+	1	NA	NA	NA	132459	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.015000	0.527363	
mm_13601.1	chr2	112618917	112619117	+	1	NA	NA	NA	59335	NM_001165935	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.015000	0.492537	
mm_74184.1	chr8	123518786	123518986	+	1	NA	NA	NA	51	NM_018855	104346	Mm.117265	NM_018855	ENSMUSG00000040220	Gas8	Gas11	growth arrest specific 8	protein-coding	0.055000	0.631841	
mm_91741.1	chr10	49218275	49218475	-	1	NA	NA	NA	-122532	NR_046212	100418235	Mm.185993	NR_046212		C130030K03Rik	-	proteasome (prosome, macropain) subunit, alpha type 6 pseudogene	pseudo	0.000000	0.353234	0(GCTTTAAAACAG,+,0.00),83(CCTTTTAGACAC,+,0.00)
mm_92972.1	chr10	86491772	86491972	-	1	NA	NA	NA	7024	NM_001164495	27204	Mm.394931	NM_013722	ENSMUSG00000059602	Syn3	-	synapsin III	protein-coding	0.005000	0.547264	
mm_82503.1	chr9	20459877	20460077	-	1	NA	NA	NA	183	NM_011753	22688	Mm.107441	NM_011753	ENSMUSG00000063108	Zfp26	5033428C05Rik|KRAB15|Zfp-26|Zfp70|Zfp81-rs1|mKIAA4196|mkr-3|mszf14|mszf52	zinc finger protein 26	protein-coding	0.090000	0.606965	
mm_111968.1	chr12	109741521	109741721	-	1	NA	NA	NA	-788	NR_030263	723941		NR_030263	ENSMUSG00000076052	Mir541	Mirn541|mir-541|mmu-mir-541	microRNA 541	ncRNA	0.005000	0.398010	
mm_22255.1	chr2	174927646	174927846	-	1	NA	NA	NA	140023	NM_001085546	664987		NM_001085546	ENSMUSG00000078905	Gm14393	OTTMUSG00000016546	predicted gene 14393	protein-coding	0.015000	0.472637	
mm_62877.1	chr7	114753662	114753862	+	1	NA	NA	NA	7996	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	0.000000	0.477612	
mm_35268.1	chr4	19900868	19901068	-	1	NA	NA	NA	21598	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.015000	0.348259	
mm_45312.1	chr5	65435575	65435775	-	1	NA	NA	NA	167	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.105000	0.681592	
mm_117689.1	chr13	94285297	94285497	-	1	NA	NA	NA	-116	NM_029153	107767	Mm.201455	NM_029153	ENSMUSG00000021687	Scamp1	4930505M11Rik|AI415563|AW122395	secretory carrier membrane protein 1	protein-coding	0.165000	0.796020	
mm_28579.1	chr3	93447290	93447490	-	1	NA	NA	NA	5060	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.090000	0.621891	
mm_148497.1	chr19	4180564	4180764	+	1	NA	NA	NA	-5185	NM_134148	107239	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	0.010000	0.492537	
mm_95428.1	chr11	50200531	50200731	+	1	NA	NA	NA	10189	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.010000	0.517413	23(TGCCTGAAAAGG,-,0.00)
mm_80884.1	chr9	99243348	99243548	+	1	NA	NA	NA	-20	NM_023873	68121	Mm.288739	NM_023873	ENSMUSG00000056267	Cep70	6720484E09Rik|Bite|C030018L16Rik	centrosomal protein 70	protein-coding	0.120000	0.706468	
mm_2141.1	chr1	88094907	88095107	+	1	NA	NA	NA	6	NM_201642	394432	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	0.010000	0.472637	
mm_123963.1	chr14	74947568	74947768	-	1	NA	NA	NA	209	NM_001252132	380916	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.125000	0.726368	
mm_29181.1	chr3	106529166	106529366	-	1	NA	NA	NA	-18532	NM_001286986	67171	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0.000000	0.437811	
mm_145075.1	chr18	42142933	42143133	+	1	NA	NA	NA	53676	NM_027072	69401	Mm.34841	NM_027072	ENSMUSG00000059455	Plac8l1	1700009N18Rik|1700015M15Rik	PLAC8-like 1	protein-coding	0.005000	0.393035	
mm_64088.1	chr7	140967941	140968141	+	1	NA	NA	NA	-35	NM_001112715	68713	Mm.175661	NM_026820	ENSMUSG00000025491	Ifitm1	1110036C17Rik|DSPA2a|Mil-2|Mil2	interferon induced transmembrane protein 1	protein-coding	0.005000	0.512438	-35(AGCTTGAAAAGG,-,0.00),46(GCCCCTAAAAAG,-,0.00),48(CCCTAAAAAGCA,+,0.00)
mm_60967.1	chr7	47772662	47772862	+	1	NA	NA	NA	-171390	NM_153067	233222	Mm.240142	NM_153067	ENSMUSG00000078698	Mrgpra3	Mrga3	MAS-related GPR, member A3	protein-coding	0.000000	0.378109	
mm_135760.1	chr16	56690906	56691106	-	1	NA	NA	NA	26444	NM_001252443	21787	Mm.425970	NM_019678	ENSMUSG00000022757	Tfg	AI173908	Trk-fused gene	protein-coding	0.015000	0.567164	-60(CCTTTTCTGGCC,+,0.00)
mm_52958.1	chr6	123123261	123123461	+	1	NA	NA	NA	45	NM_001170333	26888	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0.010000	0.427861	
mm_82134.1	chr9	123534205	123534405	+	1	NA	NA	NA	4423	NM_030692	83493	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.005000	0.472637	
mm_131689.1	chr16	20679557	20679757	+	1	NA	NA	NA	-4599	NR_028530	100217430		NR_028530		Snord66	MBII-142|snoRNA142	small nucleolar RNA, C/D box 66	snoRNA	0.025000	0.582090	
mm_71487.1	chr8	46740157	46740357	+	1	NA	NA	NA	512	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.020000	0.537313	
mm_38072.1	chr4	134127557	134127757	-	1	NA	NA	NA	1096	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.025000	0.532338	
mm_38276.1	chr4	136886082	136886282	-	1	NA	NA	NA	-5	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.010000	0.597015	
mm_116144.1	chr13	29854922	29855122	-	1	NA	NA	NA	651	NR_131896	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0.005000	0.313433	-52(CAGTTTAAAAAG,-,0.00)
mm_2698.1	chr1	127793380	127793580	+	1	NA	NA	NA	19316	NM_028399	72949	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	0.000000	0.318408	
mm_107042.1	chr12	15606244	15606444	+	1	NA	NA	NA	194757	NR_105809	102465204		NR_105809	ENSMUSG00000098480	Mir6387	Gm27281|mmu-mir-6387	microRNA 6387	ncRNA	0.010000	0.393035	81(TGGTTTATAAAG,-,0.00),83(GTTTATAAAGGA,+,0.00)
mm_37238.1	chr4	118117606	118117806	-	1	NA	NA	NA	17240	NM_001285520	20441	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.025000	0.567164	
mm_80050.1	chr9	69294572	69294772	+	1	NA	NA	NA	4831	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.005000	0.502488	
mm_53475.1	chr6	134928996	134929196	+	1	NA	NA	NA	4	NR_037955	381822	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	0.035000	0.572139	
mm_10590.1	chr2	18567621	18567821	+	1	NA	NA	NA	-104741	NM_147778	12238	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0.015000	0.412935	
mm_160783.1	chr10	127724194	127724394	+	1	NA	NA	NA	-184	NM_001199971	21334	Mm.2374	NM_009312	ENSMUSG00000025400	Tac2	PPT-B|Tac3	tachykinin 2	protein-coding	0.005000	0.452736	
mm_21581.1	chr2	164237150	164237350	-	1	NA	NA	NA	1091	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.000000	0.383085	
mm_9184.1	chr1	171089885	171090085	-	1	NA	NA	NA	-25333	NR_106103	102466998		NR_106103	ENSMUSG00000099119	Mir6546	Gm27408|mmu-mir-6546	microRNA 6546	ncRNA	0.005000	0.427861	
mm_137824.1	chr17	30576484	30576684	+	1	NA	NA	NA	-297	NM_027060	224671	Mm.41220	NM_027060	ENSMUSG00000062202	Btbd9	1700023F20Rik|4930402L05|AI464421	BTB (POZ) domain containing 9	protein-coding	0.080000	0.577114	
mm_157974.1	chrX	93832053	93832253	-	1	NA	NA	NA	-58	NM_145630	236900	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	0.125000	0.711443	
mm_118490.1	chr14	12301216	12301416	+	1	NA	NA	NA	17113	NM_001284386	218734	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	0.020000	0.348259	
mm_160847.1	chr11	50984816	50985016	+	1	NA	NA	NA	213	NM_146911	258913	Mm.451670	NM_146911	ENSMUSG00000061952	Olfr1377	MOR129-1	olfactory receptor 1377	protein-coding	0.005000	0.497512	
mm_62226.1	chr7	98500807	98501007	+	1	NA	NA	NA	6685	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.010000	0.517413	
mm_169650.1	chr15	53574548	53574748	+	1	NA	NA	NA	-228465	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.030000	0.547264	
mm_84794.1	chr9	77200318	77200518	-	1	NA	NA	NA	147452	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.005000	0.283582	
mm_126192.1	chr15	78670692	78670892	+	1	NA	NA	NA	47321	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0.005000	0.577114	
mm_93156.1	chr10	93124334	93124534	-	1	NA	NA	NA	-36442	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.025000	0.532338	
mm_28523.1	chr3	92588924	92589124	-	1	NA	NA	NA	0	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.000000	0.462687	
mm_90002.1	chr10	112270215	112270415	+	1	NA	NA	NA	-808	NM_001025581	268345	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0.090000	0.706468	
mm_74396.1	chr8	3232281	3232481	-	1	NA	NA	NA	47236	NM_010568	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.000000	0.407960	
mm_164799.1	chr18	23715160	23715360	+	1	NA	NA	NA	37045	NR_126066	100502834	Mm.213614	NR_126066	ENSMUSG00000086287	Gm15972	OTTMUSG00000028454	predicted gene 15972	ncRNA	0.010000	0.358209	
mm_43152.1	chr5	125532285	125532485	+	1	NA	NA	NA	-33	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0.100000	0.771144	
mm_27400.1	chr3	51275943	51276143	-	1	NA	NA	NA	-718	NR_073429	67746	Mm.441177	NR_073429	ENSMUSG00000087440	4930577N17Rik	-	RIKEN cDNA 4930577N17 gene	ncRNA	0.070000	0.572139	
mm_96221.1	chr11	62511589	62511789	+	1	NA	NA	NA	27572	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.015000	0.522388	
mm_52673.1	chr6	117907681	117907881	+	1	NA	NA	NA	-23	NM_001166428	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.135000	0.736318	
mm_14704.1	chr2	142631954	142632154	+	1	NA	NA	NA	269410	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.010000	0.432836	
mm_118025.1	chr13	100833359	100833559	-	1	NA	NA	NA	-32	NM_022885	69048	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.115000	0.711443	
mm_155108.1	chrX	48513753	48513953	+	1	NA	NA	NA	-290	NM_012019	26926	Mm.240434	NM_012019	ENSMUSG00000036932	Aifm1	AIF|AIFsh2|Hq|Pdcd8	apoptosis-inducing factor, mitochondrion-associated 1	protein-coding	0.020000	0.402985	23(CGGCATTTAAGC,-,0.00)
mm_88284.1	chr10	75173748	75173948	+	1	NA	NA	NA	-38225	NM_153406	74392	Mm.27716	NM_153406	ENSMUSG00000033444	Specc1l	4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376	sperm antigen with calponin homology and coiled-coil domains 1-like	protein-coding	0.015000	0.512438	-89(CACTTGAAAAGG,-,0.00)
mm_22884.1	chr3	30012104	30012304	+	1	NA	NA	NA	1000	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.025000	0.447761	
mm_79880.1	chr9	65215038	65215238	+	1	NA	NA	NA	448	NM_177460	214424	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.115000	0.751244	
mm_144444.1	chr18	22318895	22319095	+	1	NA	NA	NA	-26094	NM_001167777	211961	Mm.392310	NM_001167777	ENSMUSG00000045215	Asxl3	C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945	additional sex combs like 3 (Drosophila)	protein-coding	0.015000	0.467662	46(CCATCTAAAAGG,-,0.00)
mm_76387.1	chr8	84842680	84842880	-	1	NA	NA	NA	-2115	NM_009010	19358	Mm.255539	NM_009010	ENSMUSG00000003813	Rad23a	2310040P19Rik|AL024030|HR23A|mHR23A	RAD23 homolog A, nucleotide excision repair protein	protein-coding	0.010000	0.452736	
mm_52003.1	chr6	92827636	92827836	+	1	NA	NA	NA	73705	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	0.015000	0.477612	
mm_13840.1	chr2	119356293	119356493	+	1	NA	NA	NA	5151	NM_026929	69065	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	0.000000	0.477612	
mm_131400.1	chr16	14365634	14365834	+	1	NA	NA	NA	4176	NM_008576	17250	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.015000	0.611940	
mm_108533.1	chr12	84217585	84217785	+	1	NA	NA	NA	1196	NM_001163501	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.030000	0.482587	
mm_155611.1	chrX	83043315	83043515	+	1	NA	NA	NA	94545	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.005000	0.422886	
mm_50908.1	chr6	57582530	57582730	+	1	NA	NA	NA	1638	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.020000	0.437811	33(GTCCATAAAAAC,-,0.00)
mm_49505.1	chr6	29831845	29832045	+	1	NA	NA	NA	-21796	NM_001347084	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.025000	0.427861	
mm_141601.1	chr17	32767099	32767299	-	1	NA	NA	NA	20348	NM_001346705	208292	Mm.38813	NM_172458	ENSMUSG00000024298	Zfp871	4732483N19|9030612M13Rik|AI118577|AI265322|mKIAA3006	zinc finger protein 871	protein-coding	0.000000	0.293532	-45(GCTTATATGCAA,+,0.00)
mm_135915.1	chr16	67602525	67602725	-	1	NA	NA	NA	18283	NM_001347247	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.005000	0.358209	64(CACTTTAAAAAG,-,0.00)
mm_88684.1	chr10	80053950	80054150	+	1	NA	NA	NA	31	NM_001037741	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.145000	0.736318	
mm_63703.1	chr7	130646008	130646208	+	1	NA	NA	NA	-46448	NM_001347637	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.105000	0.766169	
mm_96637.1	chr11	69326199	69326399	+	1	NA	NA	NA	41	NM_010599	16499	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0.060000	0.587065	
mm_98949.1	chr11	98446994	98447194	+	1	NA	NA	NA	260	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.040000	0.507463	
mm_91160.1	chr10	20554736	20554936	-	1	NA	NA	NA	-6508	NM_001347366	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.015000	0.353234	
mm_15750.1	chr2	164237563	164237763	+	1	NA	NA	NA	678	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.015000	0.467662	
mm_62242.1	chr7	98835012	98835212	+	1	NA	NA	NA	0	NM_001285794	22411	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.165000	0.726368	-32(CCTTATAAAACG,+,0.00)
mm_94063.1	chr10	128368992	128369192	-	1	NA	NA	NA	945	NM_001081040	210582	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.080000	0.616915	
mm_38375.1	chr4	138457138	138457338	-	1	NA	NA	NA	2090	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.015000	0.383085	
mm_98745.1	chr11	96467167	96467367	+	1	NA	NA	NA	2676	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.015000	0.427861	
mm_79526.1	chr9	57645695	57645895	+	1	NA	NA	NA	-142	NM_007783	12988	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.045000	0.611940	
mm_61032.1	chr7	49553746	49553946	+	1	NA	NA	NA	82989	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.005000	0.517413	
mm_132205.1	chr16	32551762	32551962	+	1	NA	NA	NA	55581	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.005000	0.412935	-63(GCTTTTAGGCAG,+,0.00),-38(CCTTTAAGACTG,+,0.00)
mm_40995.1	chr5	77312452	77312652	+	1	NA	NA	NA	2068	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.000000	0.462687	
mm_60552.1	chr7	44480964	44481164	+	1	NA	NA	NA	-3453	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.452736	
mm_3339.1	chr1	137966613	137966813	+	1	NA	NA	NA	74	NR_029820	723890		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA	0.040000	0.467662	-34(GTGTAGAAAAGC,-,0.00)
mm_60817.1	chr7	45700898	45701098	+	1	NA	NA	NA	1031	NM_009800	12348	Mm.27736	NM_009800	ENSMUSG00000003273	Car11	Ca11	carbonic anhydrase 11	protein-coding	0.015000	0.472637	5(GCCCTTTTAAAG,-,0.00),6(CCCTTTTAAAGA,-,0.00),7(CCTTTTAAAGAT,+,0.00)
mm_160127.1	chr7	28630679	28630879	-	1	NA	NA	NA	236	NM_175319	101744	Mm.26022	NM_175319	ENSMUSG00000037469	Acp7	AU017076|C330005M16Rik|Papl	acid phosphatase 7, tartrate resistant	protein-coding	0.060000	0.686567	
mm_26857.1	chr3	14863948	14864148	-	1	NA	NA	NA	510	NM_007606	12350	Mm.300	NM_007606	ENSMUSG00000027559	Car3	BB219044|Ca3|Car-3	carbonic anhydrase 3	protein-coding	0.010000	0.417910	
mm_35708.1	chr4	44168178	44168378	-	1	NA	NA	NA	5	NM_001038993	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.095000	0.751244	
mm_74417.1	chr8	3625150	3625350	-	1	NA	NA	NA	32	NM_008790	18545	Mm.440882	NM_008790	ENSMUSG00000004630	Pcp2	L7|Pcp-2	Purkinje cell protein 2 (L7)	protein-coding	0.000000	0.492537	-65(GAGTATAAGAGC,-,0.00)
mm_66837.1	chr7	48880911	48881111	-	1	NA	NA	NA	30	NM_001013368	108961	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.095000	0.681592	
mm_28576.1	chr3	93445303	93445503	-	1	NA	NA	NA	3073	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.065000	0.577114	
mm_111146.1	chr12	81817184	81817384	-	1	NA	NA	NA	-36114	NM_001174107	338372	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.015000	0.527363	
mm_80301.1	chr9	73192368	73192568	+	1	NA	NA	NA	78999	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0.020000	0.606965	
mm_105129.1	chr11	101337925	101338125	-	1	NA	NA	NA	7419	NM_009675	11754	Mm.67281	NM_009675	ENSMUSG00000019326	Aoc3	SSAO|VAP1	amine oxidase, copper containing 3	protein-coding	0.005000	0.457711	-56(GCTTTTAAATGA,+,0.00)
mm_25863.1	chr3	129852791	129852991	+	1	NA	NA	NA	16152	NM_007686	12630	Mm.117180	NM_007686	ENSMUSG00000058952	Cfi	-	complement component factor i	protein-coding	0.005000	0.273632	
mm_60338.1	chr7	44335698	44335898	+	1	NA	NA	NA	25534	NM_001034115	243961	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3/ankyrin domain gene 1	protein-coding	0.120000	0.791045	
mm_37018.1	chr4	113999406	113999606	-	1	NA	NA	NA	-3	NM_001167876	242627	Mm.484115	NM_001167876	ENSMUSG00000078598	Skint5	OTTMUSG00000008560|Skint-5	selection and upkeep of intraepithelial T cells 5	protein-coding	0.005000	0.383085	73(GCTTTTAGACTT,+,0.00)
mm_112210.1	chr12	113427315	113427515	-	1	NA	NA	NA	-62150	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.407960	
mm_131828.1	chr16	22951034	22951234	+	1	NA	NA	NA	62	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.005000	0.452736	
mm_91369.1	chr10	29361954	29362154	-	1	NA	NA	NA	388	NM_026518	68031	Mm.28930	NM_026518	ENSMUSG00000038876	Rnf146	2610509H23Rik|Iduna	ring finger protein 146	protein-coding	0.175000	0.791045	
mm_110532.1	chr12	55014241	55014441	-	1	NA	NA	NA	-28005	NM_013815	217578	Mm.479583	NM_013815	ENSMUSG00000035021	Baz1a	Acf1|B930060C03|BC065123|Gtl5|Wcrf180|cbp146	bromodomain adjacent to zinc finger domain 1A	protein-coding	0.020000	0.407960	
mm_98327.1	chr11	90548756	90548956	+	1	NA	NA	NA	89252	NM_011505	20913	Mm.207203	NM_011505	ENSMUSG00000020546	Stxbp4	6030470M02Rik|Synip	syntaxin binding protein 4	protein-coding	0.040000	0.512438	
mm_9995.1	chr1	191396842	191397042	-	1	NA	NA	NA	99	NM_144880	226849	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0.105000	0.706468	
mm_120215.1	chr14	62663569	62663769	+	1	NA	NA	NA	2	NM_001199945	319433	Mm.483827	NM_001199945	ENSMUSG00000091155	Serpine3	E130113E03Rik	serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 3	protein-coding	0.015000	0.477612	
mm_98213.1	chr11	87799878	87800078	+	1	NA	NA	NA	6194	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.035000	0.547264	
mm_173281.1	chrY	1561072	1561272	+	1	NA	NA	NA	-101390	NM_148943	107868	Mm.347376	NM_148943	ENSMUSG00000069044	Usp9y	Dffry|Fafl2	ubiquitin specific peptidase 9, Y chromosome	protein-coding	0.050000	0.606965	
mm_128440.1	chr15	50720451	50720651	-	1	NA	NA	NA	168498	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.000000	0.313433	
mm_21480.1	chr2	162924560	162924760	-	1	NA	NA	NA	-6848	NM_026499	67996	Mm.24042	NM_026499	ENSMUSG00000016921	Srsf6	1210001E11Rik|AI314910|AW146126|Sfrs6	serine/arginine-rich splicing factor 6	protein-coding	0.015000	0.482587	-32(GCCTATATAAGG,-,0.00)
mm_118292.1	chr13	113046290	113046490	-	1	NA	NA	NA	-2	NM_027127	69590	Mm.12715	NM_027127	ENSMUSG00000021760	Gpx8	2310016C16Rik|AU017063	glutathione peroxidase 8 (putative)	protein-coding	0.040000	0.532338	
mm_69958.1	chr7	142375975	142376175	-	1	NA	NA	NA	-2329	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.010000	0.592040	
mm_60932.1	chr7	46853069	46853269	+	1	NA	NA	NA	6087	NM_001136069	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.010000	0.442786	
mm_78891.1	chr9	44604842	44605042	+	1	NA	NA	NA	50	NM_181324	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.105000	0.706468	
mm_160786.1	chr10	128369959	128370159	-	1	NA	NA	NA	-22	NM_001081040	210582	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.025000	0.442786	
mm_84677.1	chr9	72090171	72090371	-	1	NA	NA	NA	20930	NM_001253862	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.005000	0.238806	
mm_25595.1	chr3	116899748	116899948	+	1	NA	NA	NA	38168	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.020000	0.393035	-33(CCTTATATATGC,+,0.00)
mm_11664.1	chr2	35259555	35259755	+	1	NA	NA	NA	3296	NM_001206368	227753	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.020000	0.482587	
mm_169038.1	chr13	13870265	13870465	+	1	NA	NA	NA	-84309	NM_178640	97884	Mm.21686	NM_178640	ENSMUSG00000039242	B3galnt2	A930105D20Rik|C80633|D230016N13Rik	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2	protein-coding	0.010000	0.472637	
mm_147012.1	chr18	34511884	34512084	-	1	NA	NA	NA	-5161	NM_146084	225358	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	0.065000	0.557214	
mm_89116.1	chr10	84755970	84756170	+	1	NA	NA	NA	22	NM_001024918	71137	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.060000	0.537313	
mm_60255.1	chr7	43791867	43792067	+	1	NA	NA	NA	76	NM_028660	101533	Mm.19942	NM_028660	ENSMUSG00000047884	Klk9	1200016C12Rik|AI324041	kallikrein related-peptidase 9	protein-coding	0.020000	0.577114	
mm_110095.1	chr12	25189489	25189689	-	1	NA	NA	NA	60415	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.030000	0.582090	
mm_23812.1	chr3	79886121	79886321	+	1	NA	NA	NA	291	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.055000	0.552239	
mm_129223.1	chr15	76607413	76607613	-	1	NA	NA	NA	78	NM_053193	94230	Mm.45141	NM_053193	ENSMUSG00000034022	Cpsf1	-	cleavage and polyadenylation specific factor 1	protein-coding	0.130000	0.696517	
mm_97889.1	chr11	83298846	83299046	+	1	NA	NA	NA	31	NM_134025	103737	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding	0.100000	0.621891	
mm_13473.1	chr2	105682873	105683073	+	1	NA	NA	NA	510	NM_001310145	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.055000	0.562189	
mm_7290.1	chr1	97769923	97770123	-	1	NA	NA	NA	69	NM_173760	227399	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	0.100000	0.686567	
mm_158115.1	chrX	102189280	102189480	-	1	NA	NA	NA	11	NM_009094	20102	Mm.66	NM_009094	ENSMUSG00000031320	Rps4x	Rps4|Rps4-1	ribosomal protein S4, X-linked	protein-coding	0.070000	0.631841	
mm_166198.1	chr5	37419071	37419271	+	1	NA	NA	NA	80693	NM_145920	68525	Mm.25506	NM_145920	ENSMUSG00000050248	Evc2	1110017L09Rik|Lbn|limbin	Ellis van Creveld syndrome 2	protein-coding	0.025000	0.567164	
mm_28965.1	chr3	100969560	100969760	-	1	NA	NA	NA	3	NM_001013026	74044	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	0.065000	0.616915	
mm_107207.1	chr12	26444296	26444496	+	1	NA	NA	NA	12056	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.333333	
mm_4722.1	chr1	181150855	181151055	+	1	NA	NA	NA	24	NM_030131	98417	Mm.38229	NM_030131	ENSMUSG00000062169	Cnih4	AI647760|AW050376|CNIH-4|D530030D03Rik|E430023H19Rik|HSPC163	cornichon family AMPA receptor auxiliary protein 4	protein-coding	0.110000	0.641791	
mm_26397.1	chr3	142601182	142601382	+	1	NA	NA	NA	6435	NM_010259	14468	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.010000	0.437811	
mm_40835.1	chr5	73006807	73007007	+	1	NA	NA	NA	3	NM_173403	231290	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	0.105000	0.686567	
mm_117353.1	chr13	69739767	69739967	-	1	NA	NA	NA	30	NM_001145162	76980	Mm.23960	NM_001145162	ENSMUSG00000052981	Ube2ql1	3110006E14Rik	ubiquitin-conjugating enzyme E2Q family-like 1	protein-coding	0.145000	0.791045	
mm_21720.1	chr2	164638700	164638900	-	1	NA	NA	NA	2	NM_001012723	277345	Mm.247244	NM_001012723	ENSMUSG00000070530	Wfdc16	BC043944|WAP16	WAP four-disulfide core domain 16	protein-coding	0.015000	0.467662	
mm_68755.1	chr7	121069572	121069772	-	1	NA	NA	NA	4858	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.010000	0.353234	
mm_105543.1	chr11	106324810	106325010	-	1	NA	NA	NA	-10348	NM_001313939	15985	Mm.2987	NM_008339	ENSMUSG00000040592	Cd79b	B29|Ig-beta|Igb|Igbeta	CD79B antigen	protein-coding	0.000000	0.547264	
mm_124666.1	chr15	6386576	6386776	+	1	NA	NA	NA	-72	NM_023118	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.085000	0.597015	
mm_127566.1	chr15	102234117	102234317	+	1	NA	NA	NA	-2282	NM_013566	16421	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0.005000	0.557214	
mm_6362.1	chr1	72201220	72201420	-	1	NA	NA	NA	10987	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.005000	0.457711	-84(CCTTATAGACTC,+,0.00),-61(GCCTTTAAACCA,+,0.00),-33(CCTTATATGTCC,+,0.00)
mm_137944.1	chr17	32730884	32731084	+	1	NA	NA	NA	45325	NM_134127	106648	Mm.26539	NM_134127	ENSMUSG00000073424	Cyp4f15	AI787289|Cyp4f-15	cytochrome P450, family 4, subfamily f, polypeptide 15	protein-coding	0.020000	0.472637	
mm_143965.1	chr17	87264133	87264333	-	1	NA	NA	NA	1714	NM_176808	193813	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	0.020000	0.522388	
mm_45847.1	chr5	87699321	87699521	-	1	NA	NA	NA	4	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.358209	
mm_13920.1	chr2	120609299	120609499	+	1	NA	NA	NA	17	NM_025475	66296	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0.115000	0.706468	
mm_148829.1	chr19	6341355	6341555	+	1	NA	NA	NA	295	NR_117093	26412	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0.110000	0.736318	
mm_22139.1	chr2	170673707	170673907	-	1	NA	NA	NA	-58000	NM_029761	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0.025000	0.532338	
mm_126368.1	chr15	80115365	80115565	+	1	NA	NA	NA	-17689	NM_025609	66513	Mm.288245	NM_025609	ENSMUSG00000022414	Tab1	2310012M03Rik|Map3k7ip1|b2b449Clo	TGF-beta activated kinase 1/MAP3K7 binding protein 1	protein-coding	0.020000	0.482587	17(GCTTTTAGAAGC,+,0.00)
mm_170862.1	chr2	181919053	181919253	+	1	NA	NA	NA	54793	NM_025901	67005	Mm.271986	NM_025901	ENSMUSG00000038628	Polr3k	12.3kDa|1500004O14Rik|AI196849|AU014893|C11|RPC10|RPC11	polymerase (RNA) III (DNA directed) polypeptide K	protein-coding	0.005000	0.412935	
mm_96591.1	chr11	69090691	69090891	+	1	NA	NA	NA	2263	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.020000	0.452736	
mm_51726.1	chr6	86955062	86955262	+	1	NA	NA	NA	-54674	NM_001170591	56748	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	0.020000	0.542289	-68(CCTTTTCTAGAC,+,0.00)
mm_69311.1	chr7	128418073	128418273	-	1	NA	NA	NA	-1	NM_026418	67865	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.150000	0.781095	
mm_92690.1	chr10	80657011	80657211	-	1	NA	NA	NA	-40	NM_145361	208198	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0.010000	0.597015	
mm_165721.1	chr3	101604341	101604541	+	1	NA	NA	NA	266	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.110000	0.746269	
mm_22115.1	chr2	170141509	170141709	-	1	NA	NA	NA	1066	NM_001159683	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.005000	0.348259	-7(TTTTTTAAAGCA,+,0.00)
mm_64988.1	chr7	16916682	16916882	-	1	NA	NA	NA	7250	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.020000	0.537313	
mm_135840.1	chr16	58524121	58524321	-	1	NA	NA	NA	-909	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.020000	0.482587	
mm_124214.1	chr14	100165008	100165208	-	1	NA	NA	NA	-15312	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.005000	0.333333	
mm_70800.1	chr8	22938006	22938206	+	1	NA	NA	NA	-36730	NM_001110783	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.015000	0.442786	
mm_91357.1	chr10	28013278	28013478	-	1	NA	NA	NA	-61442	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0.000000	0.502488	-16(GCTTTAAGACCC,+,0.00)
mm_109298.1	chr12	109559829	109560029	+	1	NA	NA	NA	-3763	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.015000	0.462687	
mm_66371.1	chr7	43656535	43656735	-	1	NA	NA	NA	3526	NM_031181	83382	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.020000	0.517413	
mm_164435.1	chr16	48873975	48874175	+	1	NA	NA	NA	1467	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.000000	0.398010	
mm_99397.1	chr11	102185289	102185489	+	1	NA	NA	NA	-133	NM_172947	268490	Mm.259079	NM_172947	ENSMUSG00000020922	Lsm12	1110032E16Rik|1110059P07|2600001B17Rik	LSM12 homolog	protein-coding	0.060000	0.517413	
mm_172333.1	chr7	10930885	10931085	-	1	NA	NA	NA	-25935	NM_001185173	665780	Mm.482067	NM_001185173	ENSMUSG00000095339	Zscan4b	EG665780	zinc finger and SCAN domain containing 4B	protein-coding	0.040000	0.512438	-32(CACTTTAAAAAG,-,0.00),-18(GGCTTTTAAAAA,-,0.00),-17(GCTTTTAAAAAC,+,0.00),-17(GCTTTTAAAAAC,-,0.00)
mm_164635.1	chr17	34197647	34197847	+	1	NA	NA	NA	-448	NM_010724	16913	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	0.055000	0.611940	
mm_52703.1	chr6	119336328	119336528	+	1	NA	NA	NA	-5662	NM_172492	211187	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	0.010000	0.592040	
mm_7719.1	chr1	130661459	130661659	-	1	NA	NA	NA	59	NM_007576	12269	Mm.306720	NM_007576	ENSMUSG00000026405	C4bp	AI195242|C4bpa	complement component 4 binding protein	protein-coding	0.010000	0.452736	
mm_11435.1	chr2	31991261	31991461	+	1	NA	NA	NA	16911	NM_172268	227720	Mm.289686	NM_172268	ENSMUSG00000001855	Nup214	BC039282|CAN|D2H9S46E	nucleoporin 214	protein-coding	0.015000	0.477612	
mm_48028.1	chr5	136245885	136246085	-	1	NA	NA	NA	-1045	NM_018825	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.005000	0.542289	
mm_59530.1	chr7	27653901	27654101	+	1	NA	NA	NA	77	NM_028417	73032	Mm.44095	NM_028417	ENSMUSG00000007944	Ttc9b	2900074C18Rik	tetratricopeptide repeat domain 9B	protein-coding	0.125000	0.761194	
mm_92464.1	chr10	77970426	77970626	-	1	NA	NA	NA	-654	NM_138301	28240	Mm.276762	NM_138301	ENSMUSG00000009292	Trpm2	9830168K16Rik|C79133|LTRPC2|TRPC7|Trp7|Trrp7	transient receptor potential cation channel, subfamily M, member 2	protein-coding	0.015000	0.507463	
mm_152005.1	chr19	5918414	5918614	-	1	NA	NA	NA	-5643	NM_001291078	19708	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	0.030000	0.557214	
mm_108048.1	chr12	73908111	73908311	+	1	NA	NA	NA	344	NM_001313919	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.155000	0.761194	
mm_76721.1	chr8	94838728	94838928	-	1	NA	NA	NA	411	NM_026452	67914	Mm.169234	NM_026452	ENSMUSG00000031782	Coq9	2310005O14Rik|C78387	coenzyme Q9	protein-coding	0.070000	0.582090	
mm_116440.1	chr13	43077754	43077954	-	1	NA	NA	NA	-44985	NM_001005748	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.035000	0.621891	
mm_86591.1	chr10	13128934	13129134	+	1	NA	NA	NA	38189	NR_131912	338438		NR_131912		Hymai	-	hydatidiform mole associated and imprinted transcript	ncRNA	0.010000	0.512438	
mm_161884.1	chr18	37720253	37720453	+	1	NA	NA	NA	-201	NM_033576	93701	Mm.247203	NM_033576	ENSMUSG00000103585	Pcdhgb4	-	protocadherin gamma subfamily B, 4	protein-coding	0.040000	0.487562	
mm_85391.1	chr9	103230323	103230523	-	1	NA	NA	NA	-137	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.025000	0.517413	
mm_124913.1	chr15	11064770	11064970	+	1	NA	NA	NA	97	NM_175501	239337	Mm.224825	NM_175501	ENSMUSG00000047497	Adamts12	ADAMTS-12|AI605170	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12	protein-coding	0.040000	0.577114	
mm_2105.1	chr1	87813247	87813447	+	1	NA	NA	NA	9667	NM_009118	20215	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	0.020000	0.487562	
mm_120468.1	chr14	65971726	65971926	+	1	NA	NA	NA	3343	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.010000	0.572139	
mm_57519.1	chr6	125494660	125494860	-	1	NA	NA	NA	-5	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.075000	0.656716	
mm_6586.1	chr1	75255758	75255958	-	1	NA	NA	NA	8350	NM_008985	19275	Mm.2902	NM_008985	ENSMUSG00000026204	Ptprn	IA-2|mIA-A|mKIAA4064	protein tyrosine phosphatase, receptor type, N	protein-coding	0.015000	0.597015	
mm_92726.1	chr10	80826144	80826344	-	1	NA	NA	NA	-412	NM_001301034	18245	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	0.040000	0.552239	
mm_105553.1	chr11	106395709	106395909	-	1	NA	NA	NA	-13028	NM_010494	15896	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.005000	0.527363	
mm_53307.1	chr6	129181188	129181388	+	1	NA	NA	NA	673	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.005000	0.432836	
mm_133307.1	chr16	77598234	77598434	+	1	NA	NA	NA	-602	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.005000	0.258706	
mm_133774.1	chr16	94721886	94722086	+	1	NA	NA	NA	110567	NM_001347731	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.015000	0.517413	
mm_165983.1	chr4	106464360	106464560	+	1	NA	NA	NA	-135	NM_153565	100102	Mm.133268	NM_153565	ENSMUSG00000044254	Pcsk9	AI415265|AI747682|FH3|HCHOLA3|Narc1|PC9	proprotein convertase subtilisin/kexin type 9	protein-coding	0.030000	0.572139	
mm_162512.1	chr1	155059427	155059627	-	1	NA	NA	NA	40109	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.010000	0.557214	
mm_150027.1	chr19	29373623	29373823	+	1	NA	NA	NA	6285	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.020000	0.532338	
mm_57703.1	chr6	128540947	128541147	-	1	NA	NA	NA	-14327	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.010000	0.477612	
mm_168480.1	chr11	49023170	49023370	+	1	NA	NA	NA	-27463	NM_010999	18356	Mm.24769	NM_010999	ENSMUSG00000040328	Olfr56	IF7|MOR276-1	olfactory receptor 56	protein-coding	0.050000	0.572139	
mm_88037.1	chr10	67535404	67535604	+	1	NA	NA	NA	-2365	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.110000	0.726368	
mm_77926.1	chr9	7352902	7353102	+	1	NA	NA	NA	5628	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.442786	
mm_111699.1	chr12	103657065	103657265	-	1	NA	NA	NA	53	NM_007618	12401	Mm.290079	NM_007618	ENSMUSG00000060807	Serpina6	Cbg	serine (or cysteine) peptidase inhibitor, clade A, member 6	protein-coding	0.010000	0.512438	
mm_159170.1	chr2	104070842	104071042	+	1	NA	NA	NA	-68	NM_181858	333883	Mm.359026	NM_181858	ENSMUSG00000068686	Cd59b	-	CD59b antigen	protein-coding	0.005000	0.452736	
mm_22698.1	chr3	18054056	18054256	+	1	NA	NA	NA	-169	NM_021560	59058	Mm.149938	NM_021560	ENSMUSG00000025128	Bhlhe22	Beta3|Beta3a|Bhlhb5	basic helix-loop-helix family, member e22	protein-coding	0.020000	0.477612	51(CCTTTTATAAAG,+,0.00)
mm_73284.1	chr8	104841941	104842141	+	1	NA	NA	NA	-5027	NM_145603	234671	Mm.28191	NM_145603	ENSMUSG00000061825	Ces2c	ACH M1|CES 2|Ces2|ces2A3	carboxylesterase 2C	protein-coding	0.010000	0.393035	
mm_6784.1	chr1	84139524	84139724	-	1	NA	NA	NA	79337	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.358209	
mm_25099.1	chr3	101280552	101280752	+	1	NA	NA	NA	7287	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.020000	0.532338	
mm_87178.1	chr10	39043512	39043712	+	1	NA	NA	NA	78097	NM_010681	16775	Mm.258065	NM_010681	ENSMUSG00000019846	Lama4	-	laminin, alpha 4	protein-coding	0.010000	0.383085	
mm_83904.1	chr9	56201610	56201810	-	1	NA	NA	NA	-40640	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.005000	0.422886	
mm_6429.1	chr1	73947988	73948188	-	1	NA	NA	NA	-83622	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.025000	0.492537	17(TCTTCTAAAAGG,-,0.00)
mm_50112.1	chr6	41533768	41533968	+	1	NA	NA	NA	12092	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.015000	0.442786	
mm_144985.1	chr18	38250164	38250364	+	1	NA	NA	NA	15	NM_024179	66839	Mm.281086	NM_024179	ENSMUSG00000024442	0610009O20Rik	2700004E22Rik|Dele|Kiaa0141	RIKEN cDNA 0610009O20 gene	protein-coding	0.065000	0.661692	
mm_133953.1	chr16	4003628	4003828	-	1	NA	NA	NA	-2050	NM_177472	52864	Mm.29935	NM_177472	ENSMUSG00000039738	Slx4	AI256635|AI426760|Btbd12|D16Bwg1016e	SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)	protein-coding	0.105000	0.666667	
mm_133636.1	chr16	91663291	91663491	+	1	NA	NA	NA	15567	NM_178880	20658	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	0.000000	0.288557	
mm_81353.1	chr9	108649368	108649568	+	1	NA	NA	NA	-88	NM_011790	23807	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.090000	0.601990	
mm_52152.1	chr6	98000906	98001106	+	1	NA	NA	NA	9223	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.010000	0.393035	-91(AGGTATAAATGC,-,0.00),24(GTGTATAAGAGG,-,0.00)
mm_54518.1	chr6	35538162	35538362	-	1	NA	NA	NA	1626	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.010000	0.333333	
mm_59305.1	chr7	25267596	25267796	+	1	NA	NA	NA	-3	NM_001302811	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.075000	0.651741	
mm_121785.1	chr14	19976947	19977147	-	1	NA	NA	NA	202	NM_001038637	14702	Mm.41737	NM_010315	ENSMUSG00000043004	Gng2	-	guanine nucleotide binding protein (G protein), gamma 2	protein-coding	0.040000	0.696517	
mm_15220.1	chr2	154428654	154428854	+	1	NA	NA	NA	-7730	NM_172860	12396	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (human)	protein-coding	0.015000	0.502488	
mm_139391.1	chr17	52280049	52280249	+	1	NA	NA	NA	-322560	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.010000	0.417910	
mm_162589.1	chr1	181144162	181144362	+	1	NA	NA	NA	-58	NM_026171	67459	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	0.090000	0.646766	
mm_22557.1	chr3	9853133	9853333	+	1	NA	NA	NA	-19554	NM_001195031	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.010000	0.537313	
mm_143521.1	chr17	73636959	73637159	-	1	NA	NA	NA	73392	NM_027864	71685	Mm.271953	NM_027864	ENSMUSG00000024064	Galnt14	0610033M06Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14	protein-coding	0.015000	0.517413	
mm_71030.1	chr8	33599740	33599940	+	1	NA	NA	NA	219	NM_017374	19053	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	0.185000	0.855721	
mm_117169.1	chr13	62879895	62880095	-	1	NA	NA	NA	8287	NM_019395	14121	Mm.423078	NM_019395	ENSMUSG00000069805	Fbp1	Fbp-2|Fbp2|Fbp3	fructose bisphosphatase 1	protein-coding	0.010000	0.532338	
mm_170062.1	chr17	30626835	30627035	+	1	NA	NA	NA	-1	NM_013811	13417	Mm.426017	NM_013811	ENSMUSG00000033826	Dnah8	ATPase|Dnahc8|Hst6.7b|P1-Loop	dynein, axonemal, heavy chain 8	protein-coding	0.070000	0.631841	
mm_45527.1	chr5	72642662	72642862	-	1	NA	NA	NA	-10	NM_007723	12788	Mm.436652	NM_007723	ENSMUSG00000067220	Cnga1	Cncg	cyclic nucleotide gated channel alpha 1	protein-coding	0.015000	0.417910	
mm_131038.1	chr16	3884541	3884741	+	1	NA	NA	NA	22	NM_001290689	74763	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|Nat15	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0.110000	0.711443	
mm_40513.1	chr5	57793152	57793352	+	1	NA	NA	NA	75171	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.005000	0.373134	
mm_60588.1	chr7	44482712	44482912	+	1	NA	NA	NA	-1705	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.512438	-42(CCCTTTCTGGGC,+,0.00)
mm_138540.1	chr17	35262651	35262851	+	1	NA	NA	NA	-343	NM_010380	14964	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	0.030000	0.517413	
mm_44953.1	chr5	36621173	36621373	-	1	NA	NA	NA	-35047	NM_001113362	100855	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.025000	0.497512	
mm_83719.1	chr9	50765784	50765984	-	1	NA	NA	NA	49	NM_001311073	68721	Mm.171374	NM_023483	ENSMUSG00000037971	1110032A03Rik	4930500N06Rik|c11orf1	RIKEN cDNA 1110032A03 gene	protein-coding	0.010000	0.442786	
mm_143094.1	chr17	57080595	57080795	-	1	NA	NA	NA	-2185	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.020000	0.567164	
mm_119401.1	chr14	43857406	43857606	+	1	NA	NA	NA	-37867	NM_007894	13586	Mm.86948	NM_007894	ENSMUSG00000072601	Ear1	EAR-1|ECP 1|Raf1	eosinophil-associated, ribonuclease A family, member 1	protein-coding	0.035000	0.522388	
mm_45945.1	chr5	90263253	90263453	-	1	NA	NA	NA	-39357	NM_001163456	231430	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	0.020000	0.467662	
mm_71778.1	chr8	66471802	66472002	+	1	NA	NA	NA	14605	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.025000	0.517413	
mm_159340.1	chr3	57846987	57847187	-	1	NA	NA	NA	670	NM_019410	18645	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	0.115000	0.805970	
mm_30256.1	chr3	146651195	146651395	-	1	NA	NA	NA	22	NM_029144	75015	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.010000	0.432836	
mm_16883.1	chr2	13010944	13011144	-	1	NA	NA	NA	-180	NM_153155	227580	Mm.229322	NM_153155	ENSMUSG00000049630	C1ql3	1110065A22Rik|AI661623|C1ql|C1qtnf13|CTRP13|K100	C1q-like 3	protein-coding	0.070000	0.681592	
mm_60686.1	chr7	45154622	45154822	+	1	NA	NA	NA	-184	NM_145954	69748	Mm.82139	NM_145954	ENSMUSG00000007833	Aldh16a1	2410004H02Rik|AI452234|mFLJ00209	aldehyde dehydrogenase 16 family, member A1	protein-coding	0.050000	0.497512	
mm_41490.1	chr5	92137760	92137960	+	1	NA	NA	NA	-78	NM_019490	56041	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0.110000	0.751244	
mm_106255.1	chr11	117849005	117849205	-	1	NA	NA	NA	-132	NM_001012273	11799	Mm.8552	NM_009689	ENSMUSG00000017716	Birc5	AAC-11|Api4|TIAP|survivin40	baculoviral IAP repeat-containing 5	protein-coding	0.075000	0.656716	80(CTCTTTAAAGCA,+,0.00)
mm_158837.1	chrX	168673711	168673911	-	1	NA	NA	NA	91	NM_010832	17692	Mm.24248	NM_010832	ENSMUSG00000031358	Msl3	AU018931|Msl31|Msl3l1	male-specific lethal 3 homolog (Drosophila)	protein-coding	0.110000	0.681592	
mm_145989.1	chr18	68300280	68300480	+	1	NA	NA	NA	25	NM_001170953	67897	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	0.090000	0.582090	
mm_38692.1	chr4	145213565	145213765	-	1	NA	NA	NA	-18660	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.005000	0.467662	
mm_135583.1	chr16	50552171	50552371	-	1	NA	NA	NA	23769	NR_040379	619312	Mm.427671	NR_040379		G730013B05Rik	linc-Cblb|linc1610	RIKEN cDNA G730013B05 gene	ncRNA	0.015000	0.437811	
mm_116518.1	chr13	45763220	45763420	-	1	NA	NA	NA	201671	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.000000	0.432836	
mm_1606.1	chr1	74381672	74381872	+	1	NA	NA	NA	6569	NM_013612	18173	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.030000	0.517413	
mm_9787.1	chr1	181255208	181255408	-	1	NA	NA	NA	-43330	NM_145514	226757	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.005000	0.407960	
mm_106472.1	chr11	120136603	120136803	-	1	NA	NA	NA	14648	NM_001164799	72055	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0.005000	0.502488	
mm_90178.1	chr10	119692301	119692501	+	1	NA	NA	NA	69298	NR_045359	75321	Mm.402041	NR_045359	ENSMUSG00000084764	Grip1os2	4930564G21Rik	glutamate receptor interacting protein 1, opposite strand 2	ncRNA	0.045000	0.631841	
mm_167994.1	chrX	170010247	170010447	+	1	NA	NA	NA	-31430	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.288557	-93(CTCTTTAGAGCC,+,0.00),84(CTCTTTATAGCC,+,0.00)
mm_160610.1	chr9	80465318	80465518	-	1	NA	NA	NA	20	NM_022016	63859	Mm.422780	NM_022016	ENSMUSG00000032343	Impg1	A930015H12Rik|IMP150|SPACR	interphotoreceptor matrix proteoglycan 1	protein-coding	0.025000	0.447761	
mm_38010.1	chr4	133752630	133752830	-	1	NA	NA	NA	881	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.115000	0.761194	
mm_144083.1	chr17	94749408	94749608	-	1	NA	NA	NA	384	NM_176917	76781	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding	0.025000	0.447761	
mm_2836.1	chr1	131527806	131528006	+	1	NA	NA	NA	3	NM_175382	108900	Mm.31278	NM_175382	ENSMUSG00000055184	Fam72a	2700049P18Rik|P17	family with sequence similarity 72, member A	protein-coding	0.060000	0.562189	
mm_102579.1	chr11	61720722	61720922	-	1	NA	NA	NA	-23	NM_001033227	109342	Mm.441070	NM_001033227	ENSMUSG00000042371	Slc5a10	C330021F16Rik|SGLT5	solute carrier family 5 (sodium/glucose cotransporter), member 10	protein-coding	0.015000	0.507463	
mm_107047.1	chr12	15929523	15929723	+	1	NA	NA	NA	-112838	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.000000	0.447761	81(TTCCTTAAAAGA,-,0.00)
mm_19741.1	chr2	104742741	104742941	-	1	NA	NA	NA	-40	NM_144804	211896	Mm.288805	NM_144804	ENSMUSG00000027173	Depdc7	AV216087	DEP domain containing 7	protein-coding	0.125000	0.726368	
mm_57473.1	chr6	125232931	125233131	-	1	NA	NA	NA	-1171	NM_145391	213233	Mm.296902	NM_145391	ENSMUSG00000038213	Tapbpl	BC017613|TAPBPL-R|Tapbplr	TAP binding protein-like	protein-coding	0.015000	0.512438	
mm_162959.1	chr11	5061873	5062073	-	1	NA	NA	NA	3354	NM_144560	78926	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0.065000	0.656716	
mm_146615.1	chr18	10083088	10083288	-	1	NA	NA	NA	-53039	NM_001038589	59025	Mm.329277	NM_021522	ENSMUSG00000047879	Usp14	2610005K12Rik|2610037B11Rik|AW107924|C78769|ax|nmf375	ubiquitin specific peptidase 14	protein-coding	0.010000	0.353234	53(CCCTTAAAACAC,+,0.00)
mm_73968.1	chr8	120488639	120488839	+	1	NA	NA	NA	-127	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.050000	0.527363	
mm_147102.1	chr18	35655092	35655292	-	1	NA	NA	NA	7	NM_001270646	381148	Mm.297784	NM_001270646	ENSMUSG00000073600	Prob1	Gm1614	proline rich basic protein 1	protein-coding	0.085000	0.696517	
mm_11738.1	chr2	37776167	37776367	+	1	NA	NA	NA	18	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.065000	0.736318	
mm_60880.1	chr7	46169113	46169313	+	1	NA	NA	NA	10820	NM_011510	20927	Mm.259076	NM_011510	ENSMUSG00000040136	Abcc8	D930031B21Rik|SUR1|Sur	ATP-binding cassette, sub-family C (CFTR/MRP), member 8	protein-coding	0.005000	0.512438	
mm_69608.1	chr7	137194761	137194961	-	1	NA	NA	NA	-39822	NR_045885	100038555	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	ENSMUSG00000073800	predicted gene 10578	ncRNA	0.040000	0.402985	
mm_28357.1	chr3	89764426	89764626	-	1	NA	NA	NA	106	NM_009602	11444	Mm.35088	NM_009602	ENSMUSG00000027950	Chrnb2	Acrb-2|Acrb2|C030030P04Rik|[b]2-nAchR	cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)	protein-coding	0.085000	0.681592	
mm_3712.1	chr1	153908401	153908601	+	1	NA	NA	NA	8572	NM_008131	14645	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.020000	0.457711	
mm_26039.1	chr3	135548456	135548656	+	1	NA	NA	NA	62945	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.020000	0.537313	
mm_73618.1	chr8	110126398	110126598	+	1	NA	NA	NA	41708	NM_007586	12308	Mm.2755	NM_007586	ENSMUSG00000003657	Calb2	CR	calbindin 2	protein-coding	0.010000	0.492537	
mm_84091.1	chr9	58229726	58229926	-	1	NA	NA	NA	8676	NR_105806	102466639		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	0.005000	0.532338	
mm_4635.1	chr1	179677170	179677370	+	1	NA	NA	NA	9039	NM_178653	109232	Mm.136458	NM_178653	ENSMUSG00000038936	Sccpdh	AW214504|C330023F11Rik	saccharopine dehydrogenase (putative)	protein-coding	0.010000	0.547264	
mm_19411.1	chr2	91705664	91705864	-	1	NA	NA	NA	4828	NM_145528	51897	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	0.025000	0.427861	
mm_55786.1	chr6	82652769	82652969	-	1	NA	NA	NA	-4	NM_025882	66979	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	0.140000	0.741294	
mm_24141.1	chr3	88297030	88297230	+	1	NA	NA	NA	-5	NM_009836	12462	Mm.256034	NM_009836	ENSMUSG00000001416	Cct3	AL024092|Cctg|Tcp1-rs3|TriC-P5	chaperonin containing Tcp1, subunit 3 (gamma)	protein-coding	0.050000	0.517413	
mm_60380.1	chr7	44473462	44473662	+	1	NA	NA	NA	3215	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.015000	0.631841	-99(GGCCAGATAAGG,-,0.00)
mm_153559.1	chr19	42202023	42202223	-	1	NA	NA	NA	129	NM_018780	54612	Mm.470071	NM_018780	ENSMUSG00000018822	Sfrp5	AI605071|SARP3	secreted frizzled-related sequence protein 5	protein-coding	0.100000	0.721393	
mm_100721.1	chr11	3913652	3913852	-	1	NA	NA	NA	912	NM_153142	103710	Mm.171514	NM_153142	ENSMUSG00000048807	Slc35e4	A330108F03Rik|AI414849|AI536442	solute carrier family 35, member E4	protein-coding	0.125000	0.726368	
mm_8252.1	chr1	138620121	138620321	-	1	NA	NA	NA	-464	NM_001311148	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.025000	0.432836	
mm_15849.1	chr2	164771799	164771999	+	1	NA	NA	NA	1970	NM_026785	68612	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	0.020000	0.547264	
mm_161670.1	chr17	13354501	13354701	+	1	NA	NA	NA	29	NM_001167578	100041352	Mm.490251	NM_001167578	ENSMUSG00000052469	Tcp10c	D17Leh66C|D17Leh66ca|Gm9880|T66C-a|Tcp-10c	t-complex protein 10c	protein-coding	0.015000	0.512438	-64(GGCCCTTTAAGA,-,0.00),-61(CCTTTAAGACAG,+,0.00)
mm_63481.1	chr7	127746449	127746649	+	1	NA	NA	NA	-226	NM_172748	233902	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.070000	0.676617	
mm_8758.1	chr1	160351944	160352144	-	1	NA	NA	NA	-473	NM_001038621	29809	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0.040000	0.572139	
mm_165471.1	chr2	164255898	164256098	+	1	NA	NA	NA	645	NM_173377	329557	Mm.118769	NM_173377	ENSMUSG00000050383	Svs3b	9530004A22Rik	seminal vesicle secretory protein 3B	protein-coding	0.020000	0.492537	
mm_17306.1	chr2	26356772	26356972	-	1	NA	NA	NA	2675	NM_001037747	332579	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	0.025000	0.592040	
mm_20422.1	chr2	129303675	129303875	-	1	NA	NA	NA	6197	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.005000	0.358209	-47(GTTTTTAAAGAC,+,0.00),-21(CCTTATAAGTAG,+,0.00)
mm_141564.1	chr17	32229544	32229744	-	1	NA	NA	NA	-12276	NR_102329	100043434		NR_102329		Gm4432	-	predicted gene 4432	pseudo	0.015000	0.552239	
mm_170433.1	chr1	87784455	87784655	+	1	NA	NA	NA	-16	NR_028519	100217415	Mm.453537	NR_028519	ENSMUSG00000089281	Scarna6	MBI-46	small Cajal body-specific RNA 6	ncRNA	0.015000	0.567164	
mm_10697.1	chr2	22622525	22622725	+	1	NA	NA	NA	298	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.090000	0.651741	
mm_7455.1	chr1	120270929	120271129	-	1	NA	NA	NA	53	NM_001085409	68428	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.010000	0.542289	
mm_92609.1	chr10	80121699	80121899	-	1	NA	NA	NA	5996	NM_001301854	20869	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.010000	0.532338	
mm_143294.1	chr17	65884858	65885058	-	1	NA	NA	NA	-35	NM_001198949	19765	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.120000	0.691542	
mm_149595.1	chr19	16225095	16225295	+	1	NA	NA	NA	61097	NR_033228	595139	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0.000000	0.343284	5(CAGTTTAAAAAC,-,0.00)
mm_121650.1	chr14	10204535	10204735	-	1	NA	NA	NA	248823	NM_001308286	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.000000	0.383085	
mm_99219.1	chr11	101033018	101033218	+	1	NA	NA	NA	2778	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.015000	0.407960	
mm_154649.1	chrX	7800382	7800582	+	1	NA	NA	NA	10489	NM_207670	54645	Mm.194811	NM_207670	ENSMUSG00000031153	Gripap1	AI854681|DXImx47e|GRASP-1|Sfc10|mKIAA1167	GRIP1 associated protein 1	protein-coding	0.010000	0.537313	
mm_8796.1	chr1	161788393	161788593	-	1	NA	NA	NA	2	NM_001205243	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.025000	0.472637	
mm_56787.1	chr6	116640230	116640430	-	1	NA	NA	NA	5717	NR_106010	102466793		NR_106010	ENSMUSG00000098334	Mir7043	Gm27776|mmu-mir-7043	microRNA 7043	ncRNA	0.015000	0.442786	
mm_57278.1	chr6	124321492	124321692	-	1	NA	NA	NA	16941	NM_053094	93671	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.030000	0.542289	-45(CGCTCTTAAAGT,-,0.00),-44(GCTCTTAAAGTG,+,0.00)
mm_67309.1	chr7	79465407	79465607	-	1	NA	NA	NA	766	NM_017462	18975	Mm.3616	NM_017462	ENSMUSG00000039176	Polg	AA409516|PolgA	polymerase (DNA directed), gamma	protein-coding	0.045000	0.522388	
mm_144063.1	chr17	90800486	90800686	-	1	NA	NA	NA	-7110	NR_136930	102634634		NR_136930		Gm20491	-	enolase 1, alpha non-neuron pseudogene	pseudo	0.010000	0.333333	
mm_161987.1	chr19	29806002	29806202	-	1	NA	NA	NA	-93	NM_172836	240613	Mm.313351	NM_172836	ENSMUSG00000046138	9930021J03Rik	ENSMUSG00000048936|Gm9832|mKIAA2026	RIKEN cDNA 9930021J03 gene	protein-coding	0.160000	0.840796	
mm_122954.1	chr14	54967922	54968122	-	1	NA	NA	NA	-765	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.005000	0.517413	
mm_159330.1	chr3	40708749	40708949	+	1	NA	NA	NA	-22	NM_178386	73333	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	0.085000	0.611940	
mm_86012.1	chr9	112234536	112234736	-	1	NA	NA	NA	205	NM_001177619	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.035000	0.582090	
mm_102907.1	chr11	69555891	69556091	-	1	NA	NA	NA	4246	NM_007911	13643	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	0.020000	0.656716	
mm_164475.1	chr16	69254074	69254274	+	1	NA	NA	NA	546207	NR_130991	78110	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	-	RIKEN cDNA 4930428D20 gene	ncRNA	0.010000	0.308458	-77(CTTTTTATACAG,+,0.00)
mm_23140.1	chr3	38885749	38885949	+	1	NA	NA	NA	-1091	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.115000	0.681592	
mm_60487.1	chr7	44478479	44478679	+	1	NA	NA	NA	-5938	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.507463	
mm_76793.1	chr8	102785004	102785204	-	1	NA	NA	NA	7	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.125000	0.761194	
mm_111787.1	chr12	104751970	104752170	-	1	NA	NA	NA	-118	NM_148948	192119	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	0.165000	0.756219	
mm_104468.1	chr11	95274684	95274884	-	1	NA	NA	NA	13255	NM_053093	93670	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0.015000	0.527363	
mm_89106.1	chr10	84584763	84584963	+	1	NA	NA	NA	7916	NM_146008	216198	Mm.296142	NM_146008	ENSMUSG00000020034	Tcp11l2	E430026E19Rik	t-complex 11 (mouse) like 2	protein-coding	0.020000	0.522388	
mm_36526.1	chr4	85373142	85373342	-	1	NA	NA	NA	167786	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.010000	0.437811	-22(CTTTATATACAG,+,0.00)
mm_114906.1	chr13	94875506	94875706	+	1	NA	NA	NA	-21	NM_011021	18420	Mm.42051	NM_011021	ENSMUSG00000021685	Otp	-	orthopedia homeobox	protein-coding	0.035000	0.437811	-13(CTCTCTAAAGGA,-,0.00)
mm_133871.1	chr16	96372616	96372816	+	1	NA	NA	NA	10952	NM_028078	72058	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.020000	0.502488	
mm_70342.1	chr8	4613095	4613295	+	1	NA	NA	NA	25	NM_145591	233987	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.050000	0.587065	
mm_37907.1	chr4	132747156	132747356	-	1	NA	NA	NA	9915	NM_133888	100340	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	0.005000	0.467662	
mm_3060.1	chr1	134093193	134093393	+	1	NA	NA	NA	-14138	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.070000	0.656716	
mm_138613.1	chr17	35813779	35813979	+	1	NA	NA	NA	-7834	NM_133662	15937	Mm.25613	NM_133662	ENSMUSG00000003541	Ier3	AI663993|IEX-1|cI-3|gly96	immediate early response 3	protein-coding	0.020000	0.517413	
mm_110730.1	chr12	69767190	69767390	-	1	NA	NA	NA	-3346	NR_030450	751538		NR_030450	ENSMUSG00000076065	Mir681	Mirn681|mmu-mir-681	microRNA 681	ncRNA	0.020000	0.577114	
mm_157244.1	chrX	18461173	18461373	-	1	NA	NA	NA	124	NR_132634	75905	Mm.159617	NM_175228	ENSMUSG00000037358	4930578C19Rik	-	RIKEN cDNA 4930578C19 gene	protein-coding	0.030000	0.601990	
mm_101955.1	chr11	50296108	50296308	-	1	NA	NA	NA	-3872	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.005000	0.437811	
mm_18897.1	chr2	76713720	76713920	-	1	NA	NA	NA	38505	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.040000	0.522388	
mm_67517.1	chr7	80901135	80901335	-	1	NA	NA	NA	34	NM_028026	71968	Mm.274226	NM_028026	ENSMUSG00000025722	Wdr73	1200011I23Rik|2410008B13Rik|AI848574|C85352	WD repeat domain 73	protein-coding	0.095000	0.656716	
mm_96486.1	chr11	67686550	67686750	+	1	NA	NA	NA	-8676	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.010000	0.417910	
mm_135194.1	chr16	36408350	36408550	-	1	NA	NA	NA	-87	NM_001082545	20862	Mm.359610	NM_001082545	ENSMUSG00000022902	Stfa2	Stf2	stefin A2	protein-coding	0.000000	0.472637	56(CCTTTAAAACCC,+,0.00)
mm_56667.1	chr6	113623430	113623630	-	1	NA	NA	NA	-491	NM_009507	22346	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0.010000	0.462687	
mm_137629.1	chr17	28328519	28328719	+	1	NA	NA	NA	148	NM_011287	19896	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.150000	0.681592	
mm_83163.1	chr9	40487575	40487775	-	1	NA	NA	NA	-31911	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.055000	0.457711	
mm_31712.1	chr4	62634187	62634387	+	1	NA	NA	NA	14615	NM_134257	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.040000	0.631841	
mm_59464.1	chr7	27252161	27252361	+	1	NA	NA	NA	-6500	NM_010950	18223	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0.030000	0.547264	
mm_129699.1	chr15	81694118	81694318	-	1	NA	NA	NA	3069	NM_001164320	214685	Mm.393287	NM_001164320	ENSMUSG00000063765	Chadl	AY100452|D930017K21Rik	chondroadherin-like	protein-coding	0.135000	0.756219	
mm_81997.1	chr9	121599702	121599902	+	1	NA	NA	NA	12782	NR_040740	75384	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	0.015000	0.492537	
mm_110035.1	chr12	16999931	17000131	-	1	NA	NA	NA	87	NM_172574	217430	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	0.075000	0.626866	
mm_12254.1	chr2	68911521	68911721	+	1	NA	NA	NA	50180	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.020000	0.432836	
mm_85673.1	chr9	107709562	107709762	-	1	NA	NA	NA	813	NM_011349	20350	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.140000	0.800995	
mm_122801.1	chr14	54554224	54554424	-	1	NA	NA	NA	37	NM_145462	219072	Mm.202152	NM_145462	ENSMUSG00000022177	Haus4	9430093H08Rik|AU016300|D14Ertd500e	HAUS augmin-like complex, subunit 4	protein-coding	0.150000	0.736318	
mm_149585.1	chr19	16132592	16132792	+	1	NA	NA	NA	-139	NM_008139	14682	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.110000	0.731343	
mm_71311.1	chr8	43180421	43180621	+	1	NA	NA	NA	-2601	NM_001160412	622117	Mm.390031	NM_001160412	ENSMUSG00000091490	Triml2	EG622117|Tu4	tripartite motif family-like 2	protein-coding	0.040000	0.477612	
mm_170873.1	chr2	20899789	20899989	+	1	NA	NA	NA	67832	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.055000	0.542289	
mm_76228.1	chr8	83573103	83573303	-	1	NA	NA	NA	6445	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.030000	0.592040	
mm_107982.1	chr12	72945694	72945894	+	1	NA	NA	NA	5912	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	0.100000	0.736318	
mm_576.1	chr1	39089996	39090196	+	1	NA	NA	NA	96896	NR_105767	102466631		NR_105767	ENSMUSG00000098833	Mir6349	Gm27558|mmu-mir-6349	microRNA 6349	ncRNA	0.030000	0.522388	
mm_79039.1	chr9	46208422	46208622	+	1	NA	NA	NA	-20108	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.030000	0.547264	
mm_2239.1	chr1	91053371	91053571	+	1	NA	NA	NA	27	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.090000	0.711443	
mm_167981.1	chrX	164076048	164076248	-	1	NA	NA	NA	-13	NM_009173	20438	Mm.37215	NM_009173	ENSMUSG00000040749	Siah1b	AA960570|Sinh1b|siah-1b	seven in absentia 1B	protein-coding	0.090000	0.666667	
mm_27438.1	chr3	51750764	51750964	-	1	NA	NA	NA	89685	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.015000	0.467662	
mm_158286.1	chrX	112384439	112384639	-	1	NA	NA	NA	22240	NM_028655	73809	Mm.50508	NM_028655	ENSMUSG00000025527	Satl1	4930404K22Rik	spermidine/spermine N1-acetyl transferase-like 1	protein-coding	0.010000	0.422886	
mm_10776.1	chr2	24316428	24316628	+	1	NA	NA	NA	-20332	NM_031167	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.005000	0.477612	-33(CCACATAAAAGG,-,0.00),54(CCTTCTATAAGG,-,0.00)
mm_58665.1	chr7	6894150	6894350	+	1	NA	NA	NA	82412	NR_036631	116811	Mm.381671	NR_036631	ENSMUSG00000108043	Zim3	1700128I23Rik	zinc finger, imprinted 3	ncRNA	0.000000	0.527363	
mm_111206.1	chr12	84382421	84382621	-	1	NA	NA	NA	18413	NM_001286058	12499	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0.020000	0.557214	
mm_67651.1	chr7	84689729	84689929	-	1	NA	NA	NA	189	NR_038175	72495	Mm.382914	NR_038175	ENSMUSG00000085236	2610206C17Rik	-	RIKEN cDNA 2610206C17 gene	ncRNA	0.130000	0.721393	
mm_148343.1	chr18	84649839	84650039	-	1	NA	NA	NA	156	NM_177450	338403	Mm.23278	NM_177450	ENSMUSG00000056162	Cndp1	AI746433|Cn1	carnosine dipeptidase 1 (metallopeptidase M20 family)	protein-coding	0.020000	0.388060	
mm_142114.1	chr17	35838131	35838331	-	1	NA	NA	NA	70	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.110000	0.681592	
mm_95549.1	chr11	52307702	52307902	+	1	NA	NA	NA	-24788	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.010000	0.611940	
mm_39656.1	chr5	24842895	24843095	+	1	NA	NA	NA	-634	NM_053075	19744	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.070000	0.567164	-35(GGCCCTTAAAAG,-,0.00),-34(GCCCTTAAAAGG,-,0.00),-33(CCCTTAAAAGGA,+,0.00),-32(CCTTAAAAGGAG,+,0.00)
mm_121196.1	chr14	103051427	103051627	+	1	NA	NA	NA	4515	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.025000	0.542289	
mm_137791.1	chr17	29636926	29637126	+	1	NA	NA	NA	22237	NM_021419	58230	Mm.305994	NM_021419	ENSMUSG00000090083	Rnf8	3830404E21Rik|AIP37|laXp180	ring finger protein 8	protein-coding	0.010000	0.557214	
mm_100297.1	chr11	117830555	117830755	+	1	NA	NA	NA	-4641	NM_009387	21877	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.030000	0.537313	
mm_145473.1	chr18	60358508	60358708	+	1	NA	NA	NA	-17421	NM_021792	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.487562	32(TCCCATAAAGAG,-,0.00),34(CCATAAAGAGCC,+,0.00)
mm_67586.1	chr7	83631738	83631938	-	1	NA	NA	NA	-179	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.040000	0.552239	
mm_20946.1	chr2	151632458	151632658	-	1	NA	NA	NA	35	NM_198214	241727	Mm.39312	NM_198214	ENSMUSG00000027457	Snph	6430515A01|AW045671|AW556958|AW743098|mKIAA0374	syntaphilin	protein-coding	0.055000	0.691542	
mm_19534.1	chr2	94404894	94405094	-	1	NA	NA	NA	1695	NM_183106	74569	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	0.020000	0.422886	-32(CTATTTATACTC,+,0.00)
mm_167966.1	chrX	151801117	151801317	+	1	NA	NA	NA	-2065	NM_021523	59026	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	0.045000	0.631841	70(CCCTAGAAAAGA,-,0.00)
mm_64586.1	chr7	3155275	3155475	-	1	NA	NA	NA	13828	NM_001004153	245128	Mm.268551	NM_001004153	ENSMUSG00000054753	AU018091	-	expressed sequence AU018091	protein-coding	0.000000	0.308458	
mm_121179.1	chr14	103048917	103049117	+	1	NA	NA	NA	2005	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.482587	
mm_31734.1	chr4	63150255	63150455	+	1	NA	NA	NA	3817	NM_007443	11699	Mm.2197	NM_007443	ENSMUSG00000028356	Ambp	AI194774|ASPI|HI-30|Intin4|Itil|UTI	alpha 1 microglobulin/bikunin	protein-coding	0.010000	0.497512	
mm_89365.1	chr10	88570494	88570694	+	1	NA	NA	NA	34558	NM_001252372	109272	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0.015000	0.417910	
mm_3755.1	chr1	156040817	156041017	+	1	NA	NA	NA	56	NM_022329	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.065000	0.592040	61(GTGTTTTAAAAC,-,0.00)
mm_143608.1	chr17	78665113	78665313	-	1	NA	NA	NA	71347	NM_011500	268980	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	0.030000	0.487562	
mm_22820.1	chr3	27210372	27210572	+	1	NA	NA	NA	27468	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.020000	0.507463	
mm_134397.1	chr16	17530905	17531105	-	1	NA	NA	NA	47	NM_026909	69009	Mm.10174	NM_026909	ENSMUSG00000022760	Thap7	1810004B07Rik	THAP domain containing 7	protein-coding	0.100000	0.631841	
mm_19762.1	chr2	105399193	105399393	-	1	NA	NA	NA	26	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0.130000	0.791045	
mm_43499.1	chr5	136967836	136968036	+	1	NA	NA	NA	67	NM_021719	60363	Mm.87202	NM_021719	ENSMUSG00000001739	Cldn15	2210009B08Rik|BB107105	claudin 15	protein-coding	0.035000	0.592040	
mm_23774.1	chr3	76074468	76074668	+	1	NA	NA	NA	7	NM_178673	213262	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	0.060000	0.601990	
mm_25624.1	chr3	118733523	118733723	+	1	NA	NA	NA	171445	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.005000	0.417910	
mm_77148.1	chr8	111629063	111629263	-	1	NA	NA	NA	1159	NM_027570	52815	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	0.035000	0.606965	
mm_24285.1	chr3	89231691	89231891	+	1	NA	NA	NA	2735	NM_013605	17829	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	0.025000	0.572139	
mm_125424.1	chr15	42479641	42479841	+	1	NA	NA	NA	197236	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.010000	0.477612	-35(GGTTATTTAAGG,-,0.00)
mm_12806.1	chr2	80292727	80292927	+	1	NA	NA	NA	357	NM_177256	320769	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	0.075000	0.507463	
mm_26916.1	chr3	20155006	20155206	-	1	NA	NA	NA	10	NM_013755	27357	Mm.6375	NM_013755	ENSMUSG00000019528	Gyg	AU017667|Gyg1	glycogenin	protein-coding	0.115000	0.766169	9(CGCTATAAGAGC,-,0.00)
mm_28761.1	chr3	95882112	95882312	-	1	NA	NA	NA	16	NM_001033302	229599	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	0.080000	0.646766	
mm_102891.1	chr11	69416056	69416256	-	1	NA	NA	NA	-2481	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.035000	0.711443	
mm_125018.1	chr15	25632237	25632437	+	1	NA	NA	NA	9787	NM_019472	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.010000	0.457711	
mm_37582.1	chr4	126325590	126325790	-	1	NA	NA	NA	-491	NM_011902	24084	Mm.23895	NM_011902	ENSMUSG00000028845	Tekt2	AU014974|tektin-t	tektin 2	protein-coding	0.070000	0.661692	
mm_124949.1	chr15	12350566	12350766	+	1	NA	NA	NA	29170	NM_025673	66629	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.000000	0.388060	-58(CTCTTTATGAGC,-,0.00)
mm_172142.1	chr6	36810143	36810343	-	1	NA	NA	NA	1118	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.030000	0.542289	
mm_15333.1	chr2	155826045	155826245	+	1	NA	NA	NA	780	NM_010579	16418	Mm.271674	NM_010579	ENSMUSG00000027613	Eif6	1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding	0.080000	0.592040	
mm_119752.1	chr14	54157171	54157371	+	1	NA	NA	NA	96658	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.502488	
mm_118697.1	chr14	22140773	22140973	+	1	NA	NA	NA	121161	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.010000	0.482587	
mm_73570.1	chr8	109705410	109705610	+	1	NA	NA	NA	-36	NM_001286393	75871	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	0.140000	0.766169	
mm_157154.1	chrX	9463332	9463532	-	1	NA	NA	NA	5892	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.442786	
mm_94334.1	chr11	4637606	4637806	+	1	NA	NA	NA	-87	NM_029291	75452	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	0.065000	0.641791	
mm_156936.1	chrX	169915815	169916015	+	1	NA	NA	NA	36296	NM_001290505	17318	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	0.015000	0.532338	
mm_18097.1	chr2	44987354	44987554	-	1	NA	NA	NA	35723	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.253731	
mm_130806.1	chr15	101709747	101709947	-	1	NA	NA	NA	3044	NM_027011	110308	Mm.451847	NM_027011	ENSMUSG00000061527	Krt5	3300001P10Rik|AW146334|CK5|K5|Krt2-5|Tfip8	keratin 5	protein-coding	0.030000	0.507463	
mm_75715.1	chr8	68905672	68905872	-	1	NA	NA	NA	25217	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.407960	
mm_32726.1	chr4	116557483	116557683	+	1	NA	NA	NA	-144	NM_029868	77110	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	0.130000	0.756219	
mm_167503.1	chr9	13298058	13298258	+	1	NA	NA	NA	51202	NM_025534	66396	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.055000	0.656716	
mm_10821.1	chr2	24350968	24351168	+	1	NA	NA	NA	5697	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.005000	0.378109	
mm_87029.1	chr10	28611845	28612045	+	1	NA	NA	NA	-56415	NM_001305663	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.010000	0.432836	
mm_155007.1	chrX	41400762	41400962	+	1	NA	NA	NA	-439	NM_016886	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding	0.030000	0.437811	
mm_104353.1	chr11	94297764	94297964	-	1	NA	NA	NA	24047	NM_026313	67684	Mm.30927	NM_026313	ENSMUSG00000020863	Luc7l3	3300001P08Rik|Luc7a	LUC7-like 3 (S. cerevisiae)	protein-coding	0.010000	0.432836	
mm_159542.1	chr4	88827248	88827448	+	1	NA	NA	NA	-68	NM_206871	15969	Mm.377090	NM_206871	ENSMUSG00000101252	Ifna6	IFNa8/6|Ifa6|Ifa8|Ifna8	interferon alpha 6	protein-coding	0.000000	0.437811	-35(CCCTATTTAAGA,-,0.00)
mm_91988.1	chr10	61978992	61979192	-	1	NA	NA	NA	16	NM_001304757	12817	Mm.300931	NM_007731	ENSMUSG00000058806	Col13a1	-	collagen, type XIII, alpha 1	protein-coding	0.105000	0.706468	
mm_47113.1	chr5	119580441	119580641	-	1	NA	NA	NA	-183	NR_045702	100993	Mm.381453	NR_045702	ENSMUSG00000087516	AW549542	-	expressed sequence AW549542	ncRNA	0.015000	0.492537	86(TCCTATATAGCC,+,0.00)
mm_120409.1	chr14	65173950	65174150	+	1	NA	NA	NA	-75944	NM_018788	54616	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.010000	0.562189	
mm_160364.1	chr8	21969501	21969701	+	1	NA	NA	NA	-995	NM_026459	67929	Mm.60688	NM_026459	ENSMUSG00000017049	Ccdc70	1700112P19Rik	coiled-coil domain containing 70	protein-coding	0.010000	0.472637	
mm_173170.1	chrX	43679493	43679693	-	1	NA	NA	NA	88604	NM_001195271	637093	Mm.368463	NM_001195271	ENSMUSG00000078320	Tex13c1	Gm362|Tex13c	TEX13 family member C1	protein-coding	0.060000	0.666667	
mm_142294.1	chr17	40879925	40880125	-	1	NA	NA	NA	533	NM_027834	71583	Mm.158733	NM_027834	ENSMUSG00000054951	9130008F23Rik	-	RIKEN cDNA 9130008F23 gene	protein-coding	0.055000	0.597015	
mm_170276.1	chr18	25460651	25460851	-	1	NA	NA	NA	291731	NM_001033532	225289	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	0.030000	0.497512	
mm_31087.1	chr4	41631619	41631819	+	1	NA	NA	NA	8583	NM_027147	69638	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.015000	0.592040	
mm_50228.1	chr6	42350847	42351047	+	1	NA	NA	NA	1119	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.030000	0.567164	
mm_89440.1	chr10	91170742	91170942	+	1	NA	NA	NA	-292	NM_001283048	21917	Mm.159684	NM_011605	ENSMUSG00000019961	Tmpo	5630400D24Rik|AI195756|AI606875|AW214352|AW547477|LAP2|TP	thymopoietin	protein-coding	0.145000	0.726368	
mm_141441.1	chr17	29691150	29691350	-	1	NA	NA	NA	25767	NM_026782	68597	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	0.025000	0.517413	
mm_26618.1	chr3	152395972	152396172	+	1	NA	NA	NA	69	NM_001080755	108946	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.170000	0.815920	
mm_40094.1	chr5	34557217	34557417	+	1	NA	NA	NA	7741	NM_001145859	24055	Mm.5012	NM_011893	ENSMUSG00000054520	Sh3bp2	3BP2	SH3-domain binding protein 2	protein-coding	0.040000	0.567164	
mm_25162.1	chr3	103058227	103058427	+	1	NA	NA	NA	42	NM_010937	18176	Mm.400954	NM_010937	ENSMUSG00000027852	Nras	AV095280|N-ras	neuroblastoma ras oncogene	protein-coding	0.085000	0.681592	
mm_76370.1	chr8	84800206	84800406	-	1	NA	NA	NA	32	NM_010906	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.205000	0.786070	
mm_136421.1	chr16	93971028	93971228	-	1	NA	NA	NA	37709	NM_019500	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.035000	0.577114	
mm_162734.1	chr10	52193193	52193393	+	1	NA	NA	NA	1951	NM_011282	19886	Mm.236163	NM_011282	ENSMUSG00000019893	Ros1	Ros-1|c-ros	Ros1 proto-oncogene	protein-coding	0.005000	0.452736	
mm_9366.1	chr1	172199136	172199336	-	1	NA	NA	NA	7568	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.020000	0.512438	
mm_42920.1	chr5	122720191	122720391	+	1	NA	NA	NA	12747	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.005000	0.522388	
mm_113184.1	chr13	24905559	24905759	+	1	NA	NA	NA	59	NR_045182	73326	Mm.458692	NR_045182		4932702P03Rik	1700047I16Rik	RIKEN cDNA 4932702P03 gene	ncRNA	0.045000	0.547264	
mm_6819.1	chr1	84191987	84192187	-	1	NA	NA	NA	26874	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.442786	
mm_67873.1	chr7	99182561	99182761	-	1	NA	NA	NA	52	NM_026384	67800	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	0.120000	0.721393	
mm_55438.1	chr6	67035197	67035397	-	1	NA	NA	NA	-1302	NR_040278	320172	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0.000000	0.278607	
mm_57151.1	chr6	122729819	122730019	-	1	NA	NA	NA	12826	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.030000	0.611940	
mm_152673.1	chr19	14679775	14679975	-	1	NA	NA	NA	-81692	NM_001302947	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.010000	0.472637	
mm_31504.1	chr4	53456797	53456997	+	1	NA	NA	NA	16484	NM_133891	100434	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.025000	0.333333	
mm_71278.1	chr8	40919647	40919847	+	1	NA	NA	NA	-6486	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.005000	0.393035	22(AGCTCTTTAAGG,-,0.00)
mm_152428.1	chr19	10676705	10676905	-	1	NA	NA	NA	1266	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.020000	0.462687	
mm_92605.1	chr10	80105995	80106195	-	1	NA	NA	NA	-3393	NM_183426	216161	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch homolog 2 (Drosophila)	protein-coding	0.005000	0.606965	
mm_25862.1	chr3	129836689	129836889	+	1	NA	NA	NA	50	NM_007686	12630	Mm.117180	NM_007686	ENSMUSG00000058952	Cfi	-	complement component factor i	protein-coding	0.025000	0.467662	
mm_163142.1	chr11	80494975	80495175	+	1	NA	NA	NA	14031	NR_126552	77417	Mm.437510	NR_126552	ENSMUSG00000085078	C030013C21Rik	-	RIKEN cDNA C030013C21 gene	ncRNA	0.040000	0.522388	
mm_94607.1	chr11	16257542	16257742	+	1	NA	NA	NA	-82	NM_001290539	211739	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding	0.130000	0.716418	
mm_162413.1	chr1	87358277	87358477	+	1	NA	NA	NA	31379	NM_001110212	227331	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	0.000000	0.343284	
mm_41098.1	chr5	87694681	87694881	+	1	NA	NA	NA	4644	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.522388	
mm_105181.1	chr11	101893640	101893840	-	1	NA	NA	NA	614	NM_010791	17285	Mm.3404	NM_010791	ENSMUSG00000001493	Meox1	AI385561|D330041M02Rik|Mox-1|Mox1	mesenchyme homeobox 1	protein-coding	0.040000	0.656716	
mm_129920.1	chr15	84238786	84238986	-	1	NA	NA	NA	6843	NM_133167	170736	Mm.323892	NM_133167	ENSMUSG00000022438	Parvb	AI595373|AW742462|D15Gsk1|affixin	parvin, beta	protein-coding	0.045000	0.432836	
mm_60651.1	chr7	44857278	44857478	+	1	NA	NA	NA	-25	NM_001290767	59047	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0.060000	0.641791	
mm_110524.1	chr12	54892477	54892677	-	1	NA	NA	NA	-29700	NM_007688	12632	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	0.005000	0.343284	
mm_165011.1	chr19	27216973	27217173	+	1	NA	NA	NA	53	NM_001161420	22359	Mm.4141	NM_013703	ENSMUSG00000024924	Vldlr	AA408956|AI451093|AW047288	very low density lipoprotein receptor	protein-coding	0.115000	0.766169	
mm_78461.1	chr9	32393870	32394070	+	1	NA	NA	NA	-15	NM_001168354	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.005000	0.407960	
mm_115361.1	chr13	112927589	112927789	+	1	NA	NA	NA	-104	NM_172594	218629	Mm.35094	NM_172594	ENSMUSG00000042426	Dhx29	3732415M03|AU043276|Ddxx|E130202M19Rik	DEAH (Asp-Glu-Ala-His) box polypeptide 29	protein-coding	0.080000	0.676617	
mm_145622.1	chr18	61108813	61109013	+	1	NA	NA	NA	3341	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.015000	0.522388	-52(TTCCTTAAAAGA,-,0.00)
mm_10885.1	chr2	25262439	25262639	+	1	NA	NA	NA	-59	NM_175286	97031	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0.045000	0.582090	
mm_92359.1	chr10	75932376	75932576	-	1	NA	NA	NA	26	NM_001306184	17385	Mm.4561	NM_008606	ENSMUSG00000000901	Mmp11	MMP-11|SL-3|ST3|Stmy3	matrix metallopeptidase 11	protein-coding	0.115000	0.761194	
mm_173293.1	chrY	3934573	3934773	+	1	NA	NA	NA	163000	NM_011253	19657	Mm.4711	NM_011253	ENSMUSG00000094658	Rbmy	RBM|Rbm1|Rbm1-rs1|Rbmy1a1|Rbmy1a1-rs1|Rbmy1b	RNA binding motif protein, Y chromosome	protein-coding	0.025000	0.358209	
mm_127221.1	chr15	99393487	99393687	+	1	NA	NA	NA	368	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.035000	0.582090	
mm_106079.1	chr11	116174663	116174863	-	1	NA	NA	NA	-6585	NM_172571	217335	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.050000	0.557214	
mm_169107.1	chr13	44869582	44869782	-	1	NA	NA	NA	132414	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.080000	0.582090	-64(AACTTTAAATGG,-,0.00),83(CCCCAGAAAAGG,-,0.00)
mm_7000.1	chr1	86426123	86426323	-	1	NA	NA	NA	-106	NM_027966	71863	Mm.179627	NM_027966	ENSMUSG00000036574	1700019O17Rik	-	RIKEN cDNA 1700019O17 gene	protein-coding	0.005000	0.507463	
mm_79233.1	chr9	50499054	50499254	+	1	NA	NA	NA	4629	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.040000	0.532338	
mm_23359.1	chr3	55181942	55182142	+	1	NA	NA	NA	-2	NM_028937	74434	Mm.25514	NM_028937	ENSMUSG00000027794	Sohlh2	4933406N12Rik|AI413378|Sosf2	spermatogenesis and oogenesis specific basic helix-loop-helix 2	protein-coding	0.070000	0.711443	
mm_13927.1	chr2	120971550	120971750	+	1	NA	NA	NA	-935	NM_009461	22222	Mm.389330	NM_009461	ENSMUSG00000027272	Ubr1	AI504731	ubiquitin protein ligase E3 component n-recognin 1	protein-coding	0.015000	0.447761	
mm_109422.1	chr12	110500706	110500906	+	1	NA	NA	NA	15067	NM_012023	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.000000	0.363184	
mm_135222.1	chr16	36784614	36784814	-	1	NA	NA	NA	248	NM_001145899	57738	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.015000	0.487562	
mm_119334.1	chr14	39980425	39980625	+	1	NA	NA	NA	324862	NR_045936	73591	Mm.65499	NR_045936	ENSMUSG00000101261	1700109I08Rik	-	RIKEN cDNA 1700109I08 gene	ncRNA	0.010000	0.263682	
mm_2854.1	chr1	131674853	131675053	+	1	NA	NA	NA	-13742	NM_145509	226421	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0.020000	0.487562	-13(CCCTAAAGAGGG,+,0.00)
mm_6298.1	chr1	71101871	71102071	-	1	NA	NA	NA	1001	NM_007525	12021	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	ENSMUSG00000060893|ENSMUSG00000073653	BRCA1 associated RING domain 1	protein-coding	0.015000	0.278607	
mm_45538.1	chr5	72774849	72775049	-	1	NA	NA	NA	-22172	NM_001122754	22165	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.000000	0.393035	
mm_110001.1	chr12	15816501	15816701	-	1	NA	NA	NA	184	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.040000	0.432836	
mm_6797.1	chr1	84150382	84150582	-	1	NA	NA	NA	68479	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.030000	0.472637	21(TGCTTTTTAAAG,-,0.00),22(GCTTTTTAAAGC,-,0.00),23(CTTTTTAAAGCC,+,0.00)
mm_20314.1	chr2	127300744	127300944	-	1	NA	NA	NA	30615	NM_139308	99138	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0.005000	0.542289	-34(AGGTTTAAAAAG,-,0.00),-32(GTTTAAAAAGCC,+,0.00)
mm_36784.1	chr4	103011906	103012106	-	1	NA	NA	NA	-41	NR_028391	100473	Mm.393171	NR_028391	ENSMUSG00000085041	BB031773	-	expressed sequence BB031773	ncRNA	0.020000	0.507463	-34(GAACTTATAAGG,-,0.00)
mm_109322.1	chr12	109561871	109562071	+	1	NA	NA	NA	-1721	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.020000	0.383085	
mm_567.1	chr1	38035664	38035864	+	1	NA	NA	NA	37754	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.010000	0.532338	
mm_114316.1	chr13	60029583	60029783	+	1	NA	NA	NA	-28	NR_046142	328263	Mm.123405	NR_046142		A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	0.015000	0.487562	
mm_169590.1	chr15	29015467	29015667	-	1	NA	NA	NA	811801	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.005000	0.353234	
mm_165160.1	chr2	25047877	25048077	+	1	NA	NA	NA	-6402	NM_001177654	56876	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.005000	0.477612	
mm_95539.1	chr11	52275537	52275737	+	1	NA	NA	NA	6958	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.020000	0.552239	
mm_52963.1	chr6	123124336	123124536	+	1	NA	NA	NA	1120	NM_001170333	26888	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0.005000	0.393035	
mm_127627.1	chr15	102462336	102462536	+	1	NA	NA	NA	3266	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.015000	0.477612	
mm_58647.1	chr7	6260223	6260423	+	1	NA	NA	NA	4401	NM_001177417	627821	Mm.99441	NM_001177416	ENSMUSG00000053367	Gm6792	EG627821	predicted gene 6792	protein-coding	0.010000	0.527363	
mm_94504.1	chr11	7197753	7197953	+	1	NA	NA	NA	66	NM_008341	16006	Mm.21300	NM_008341	ENSMUSG00000020429	Igfbp1	-	insulin-like growth factor binding protein 1	protein-coding	0.035000	0.582090	
mm_158781.1	chrX	167207149	167207349	-	1	NA	NA	NA	1969	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.000000	0.447761	
mm_107478.1	chr12	37880687	37880887	+	1	NA	NA	NA	82	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	0.020000	0.567164	
mm_56629.1	chr6	112930580	112930780	-	1	NA	NA	NA	16586	NM_080448	259302	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	0.020000	0.398010	
mm_133639.1	chr16	91729253	91729453	+	1	NA	NA	NA	-18	NM_001110275	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.100000	0.701493	
mm_136318.1	chr16	91931486	91931686	-	1	NA	NA	NA	44	NM_138597	28080	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.105000	0.641791	
mm_34979.1	chr4	156013804	156014004	+	1	NA	NA	NA	209	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.010000	0.532338	-95(GTTCTTATAGCC,+,0.00)
mm_167451.1	chr8	122775389	122775589	+	1	NA	NA	NA	3	NM_144932	257633	Mm.334875	NM_144932	ENSMUSG00000015016	Acsf3	BB101783	acyl-CoA synthetase family member 3	protein-coding	0.085000	0.606965	
mm_54136.1	chr6	21852415	21852615	-	1	NA	NA	NA	0	NM_173007	269831	Mm.21950	NM_173007	ENSMUSG00000029669	Tspan12	9030619E17|AI426782|AI663988|AW111457|Tm4sf12	tetraspanin 12	protein-coding	0.025000	0.477612	1(CCATTTTAAAGG,-,0.00),2(CATTTTAAAGGG,+,0.00)
mm_155626.1	chrX	83855291	83855491	+	1	NA	NA	NA	-367467	NM_021898	100502723	Mm.383210	NM_021898	ENSMUSG00000035522	Tsga8	Halap-X|Halapx	testis specific gene A8	protein-coding	0.010000	0.378109	
mm_133702.1	chr16	92995677	92995877	+	1	NA	NA	NA	-169703	NM_001111022	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.010000	0.532338	
mm_111170.1	chr12	83621076	83621276	-	1	NA	NA	NA	-11058	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.055000	0.532338	
mm_1240.1	chr1	62796124	62796324	+	1	NA	NA	NA	-1492	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.020000	0.393035	
mm_28265.1	chr3	88744893	88745093	-	1	NA	NA	NA	27606	NM_018804	229521	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0.015000	0.497512	
mm_154663.1	chrX	7874304	7874504	+	1	NA	NA	NA	-3902	NM_138606	18715	Mm.347478	NM_138606	ENSMUSG00000031155	Pim2	DXCch3|Pim-2	proviral integration site 2	protein-coding	0.010000	0.502488	
mm_172517.1	chr7	80098430	80098630	-	1	NA	NA	NA	16820	NM_173011	269951	Mm.246432	NM_173011	ENSMUSG00000030541	Idh2	E430004F23|IDPm|Idh-2	isocitrate dehydrogenase 2 (NADP+), mitochondrial	protein-coding	0.015000	0.507463	
mm_70297.1	chr8	3994923	3995123	+	1	NA	NA	NA	-48160	NM_130903	170776	Mm.215729	NM_130903	ENSMUSG00000040165	Cd209c	SIGNR2|mSIGNR2	CD209c antigen	protein-coding	0.040000	0.437811	
mm_106571.1	chr11	120660476	120660676	-	1	NA	NA	NA	261	NM_175263	77583	Mm.32839	NM_175263	ENSMUSG00000042988	Notum	5730593N15Rik	notum pectinacetylesterase homolog (Drosophila)	protein-coding	0.145000	0.751244	
mm_99390.1	chr11	102097466	102097666	+	1	NA	NA	NA	3734	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.035000	0.567164	
mm_93609.1	chr10	117238450	117238650	-	1	NA	NA	NA	131	NM_029906	77397	Mm.118350	NM_029906	ENSMUSG00000020177	9530003J23Rik	Lyzf1	RIKEN cDNA 9530003J23 gene	protein-coding	0.015000	0.522388	-87(GCTTAAATACTG,+,0.00)
mm_77155.1	chr8	111686552	111686752	-	1	NA	NA	NA	3022	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.025000	0.606965	
mm_10803.1	chr2	24349646	24349846	+	1	NA	NA	NA	4375	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.000000	0.457711	
mm_2106.1	chr1	87814702	87814902	+	1	NA	NA	NA	11122	NM_009118	20215	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	0.025000	0.567164	
mm_65243.1	chr7	19822637	19822837	-	1	NA	NA	NA	18	NM_033601	12051	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.145000	0.791045	
mm_109449.1	chr12	111029004	111029204	+	1	NA	NA	NA	-10694	NM_198023	217864	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0.010000	0.398010	
mm_23119.1	chr3	37643173	37643373	+	1	NA	NA	NA	3326	NM_001305442	24063	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty homolog 1 (Drosophila)	protein-coding	0.030000	0.587065	
mm_6579.1	chr1	75218389	75218589	-	1	NA	NA	NA	805	NM_001313723	22145	Mm.1155	NM_009447	ENSMUSG00000026202	Tuba4a	M[a]4|Tuba4	tubulin, alpha 4A	protein-coding	0.050000	0.606965	-32(GTATTTATAGCC,+,0.00)
mm_167814.1	chr9	124257518	124257718	-	1	NA	NA	NA	55076	NM_001243118	630836	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0.000000	0.482587	
mm_132273.1	chr16	32914016	32914216	+	1	NA	NA	NA	16	NM_001310672	70144	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	0.120000	0.726368	
mm_42659.1	chr5	119670304	119670504	+	1	NA	NA	NA	-458	NM_198052	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.080000	0.636816	
mm_131244.1	chr16	10526267	10526467	+	1	NA	NA	NA	16687	NM_021428	58239	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0.025000	0.542289	
mm_358.1	chr1	33719886	33720086	+	1	NA	NA	NA	90	NM_008999	19335	Mm.86744	NM_008999	ENSMUSG00000004768	Rab23	AW545388|opb|opb2	RAB23, member RAS oncogene family	protein-coding	0.135000	0.666667	
mm_128620.1	chr15	58942708	58942908	-	1	NA	NA	NA	8998	NM_023172	66218	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.020000	0.497512	
mm_120319.1	chr14	63142765	63142965	+	1	NA	NA	NA	20403	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.015000	0.477612	
mm_21741.1	chr2	164778117	164778317	-	1	NA	NA	NA	1517	NM_009394	21925	Mm.1716	NM_009394	ENSMUSG00000017300	Tnnc2	Tncs	troponin C2, fast	protein-coding	0.025000	0.567164	
mm_32746.1	chr4	116668396	116668596	+	1	NA	NA	NA	-16822	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.005000	0.437811	
mm_22282.1	chr2	180042320	180042520	-	1	NA	NA	NA	44	NM_001289476	26444	Mm.21728	NM_011969	ENSMUSG00000027566	Psma7	C6-I	proteasome (prosome, macropain) subunit, alpha type 7	protein-coding	0.145000	0.731343	
mm_154109.1	chr19	57118904	57119104	-	1	NA	NA	NA	20	NM_001347459	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.020000	0.557214	
mm_6213.1	chr1	66838358	66838558	-	1	NA	NA	NA	-20863	NM_001122738	68691	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.015000	0.432836	-88(CCTTTTATCGGA,+,0.00)
mm_165497.1	chr2	166509620	166509820	+	1	NA	NA	NA	62269	NR_015558	319684	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.015000	0.487562	
mm_129193.1	chr15	76374834	76375034	-	1	NA	NA	NA	4	NM_183099	73542	Mm.159026	NM_183099	ENSMUSG00000060794	Tssk5	1700091F14Rik	testis-specific serine kinase 5	protein-coding	0.010000	0.472637	-88(GGGCTTAAGAGG,-,0.00)
mm_98987.1	chr11	98752928	98753128	+	1	NA	NA	NA	11243	NM_001313983	21833	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.025000	0.462687	-33(GCTCATAAAGAG,+,0.00)
mm_109341.1	chr12	109595289	109595489	+	1	NA	NA	NA	8	NR_037232	100526473		NR_037232	ENSMUSG00000070129	Mir3071	mir-3071|mmu-mir-3071	microRNA 3071	ncRNA	0.030000	0.482587	
mm_46086.1	chr5	92346837	92347037	-	1	NA	NA	NA	1952	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.015000	0.398010	
mm_83090.1	chr9	40320867	40321067	-	1	NA	NA	NA	-12505	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.025000	0.562189	
mm_39225.1	chr4	156200698	156200898	-	1	NA	NA	NA	20	NM_015783	100038882	Mm.4950	NM_015783	ENSMUSG00000035692	Isg15	G1p2|IGI15|IP17|Irfp|UCRP	ISG15 ubiquitin-like modifier	protein-coding	0.020000	0.502488	
mm_155737.1	chrX	96166390	96166590	+	1	NA	NA	NA	70445	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.025000	0.497512	
mm_52461.1	chr6	113697111	113697311	+	1	NA	NA	NA	161	NM_001033463	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.140000	0.786070	
mm_153490.1	chr19	41323840	41324040	-	1	NA	NA	NA	-59936	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.000000	0.482587	
mm_117177.1	chr13	63323422	63323622	-	1	NA	NA	NA	-22239	NR_037235	100526474		NR_037235	ENSMUSG00000092741	Mir3074-1	mmu-mir-3074-1	microRNA 3074-1	ncRNA	0.010000	0.522388	-34(GCTTTAAGAGTC,+,0.00)
mm_110656.1	chr12	59061351	59061551	-	1	NA	NA	NA	21	NM_001306218	78232	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	0.075000	0.701493	
mm_20271.1	chr2	126783334	126783534	-	1	NA	NA	NA	26	NM_029163	75083	Mm.389373	NM_029163	ENSMUSG00000027364	Usp50	1700086G18Rik|4930511O11Rik	ubiquitin specific peptidase 50	protein-coding	0.010000	0.462687	
mm_45765.1	chr5	86916933	86917133	-	1	NA	NA	NA	9470	NM_152811	71773	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0.000000	0.398010	
mm_130661.1	chr15	100644849	100645049	-	1	NA	NA	NA	4280	NR_105926	102465580		NR_105926	ENSMUSG00000098527	Mir6961	Gm27367|mmu-mir-6961	microRNA 6961	ncRNA	0.030000	0.626866	
mm_146298.1	chr18	80186139	80186339	+	1	NA	NA	NA	0	NR_131039	105246506	Mm.392326	NR_131039		LOC105246506	-	uncharacterized LOC105246506	ncRNA	0.010000	0.437811	
mm_105683.1	chr11	107716423	107716623	-	1	NA	NA	NA	-47	NM_007582	12299	Mm.57093	NM_007582	ENSMUSG00000020722	Cacng1	-	calcium channel, voltage-dependent, gamma subunit 1	protein-coding	0.020000	0.592040	
mm_17795.1	chr2	33130493	33130693	-	1	NA	NA	NA	-43389	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.120000	0.786070	
mm_27189.1	chr3	34699353	34699553	-	1	NA	NA	NA	17209	NR_038347	100041108	Mm.24764	NR_038347	ENSMUSG00000105153	Gm3143	-	predicted gene 3143	ncRNA	0.020000	0.497512	
mm_138718.1	chr17	36869421	36869621	+	1	NA	NA	NA	-53	NM_011280	19824	Mm.299155	NM_011280	ENSMUSG00000073400	Trim10	AI324236|BB139825|Herf1|Rnf9	tripartite motif-containing 10	protein-coding	0.005000	0.552239	
mm_144284.1	chr18	11924857	11925057	+	1	NA	NA	NA	-84519	NR_035447	100316686		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0.030000	0.582090	
mm_127581.1	chr15	102326063	102326263	+	1	NA	NA	NA	47	NM_027044	56612	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	0.080000	0.601990	
mm_135436.1	chr16	45383021	45383221	-	1	NA	NA	NA	25932	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.015000	0.482587	
mm_17964.1	chr2	37430767	37430967	-	1	NA	NA	NA	52	NM_146253	241322	Mm.330182	NM_146253	ENSMUSG00000066798	Zbtb6	A830092L04Rik|ZID|Zfp482	zinc finger and BTB domain containing 6	protein-coding	0.055000	0.547264	
mm_28275.1	chr3	88913817	88914017	-	1	NA	NA	NA	33	NM_144898	229524	Mm.440405	NM_144898	ENSMUSG00000068922	Msto1	BC008103|mst	misato 1, mitochondrial distribution and morphology regulator	protein-coding	0.130000	0.716418	
mm_172281.1	chr6	90845390	90845590	-	1	NA	NA	NA	-35367	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.025000	0.447761	
mm_97551.1	chr11	78929658	78929858	+	1	NA	NA	NA	4467	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.010000	0.452736	
mm_27000.1	chr3	25838356	25838556	-	1	NA	NA	NA	314851	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.388060	
mm_171725.1	chr4	88376284	88376484	+	1	NA	NA	NA	62542	NM_025760	66775	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.060000	0.651741	
mm_50501.1	chr6	49035975	49036175	+	1	NA	NA	NA	-443	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.025000	0.482587	
mm_127642.1	chr15	102483091	102483291	+	1	NA	NA	NA	12559	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.015000	0.452736	
mm_106364.1	chr11	118393880	118394080	-	1	NA	NA	NA	7951	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.030000	0.562189	
mm_146434.1	chr18	84879498	84879698	+	1	NA	NA	NA	28184	NM_025797	109672	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.025000	0.497512	
mm_78816.1	chr9	44084824	44085024	+	1	NA	NA	NA	4	NM_198091	53376	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.160000	0.776119	
mm_50649.1	chr6	51469345	51469545	+	1	NA	NA	NA	449	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.105000	0.686567	
mm_150168.1	chr19	32485834	32486034	+	1	NA	NA	NA	165	NM_010799	17330	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0.175000	0.786070	
mm_91186.1	chr10	21125159	21125359	-	1	NA	NA	NA	35725	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.005000	0.263682	
mm_30483.1	chr3	155025348	155025548	-	1	NA	NA	NA	29959	NM_177066	435766	Mm.210428	NM_177066	ENSMUSG00000040086	Tnni3k	Cark|D830019J24Rik	TNNI3 interacting kinase	protein-coding	0.010000	0.378109	
mm_159914.1	chr6	48605436	48605636	+	1	NA	NA	NA	-7644	NM_173429	243372	Mm.435190	NM_173429	ENSMUSG00000007216	Zfp775	C130032F08Rik|Znf775	zinc finger protein 775	protein-coding	0.005000	0.487562	
mm_143686.1	chr17	80062481	80062681	-	1	NA	NA	NA	-313	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.105000	0.606965	
mm_141881.1	chr17	34859938	34860138	-	1	NA	NA	NA	-2406	NR_105938	102465587		NR_105938	ENSMUSG00000098445	Mir6972	Gm27810|mmu-mir-6972	microRNA 6972	ncRNA	0.025000	0.477612	-71(TTTTTTAAACAC,+,0.00)
mm_18555.1	chr2	65189082	65189282	-	1	NA	NA	NA	49444	NM_177025	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.005000	0.288557	
mm_37916.1	chr4	132783857	132784057	-	1	NA	NA	NA	12407	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.000000	0.467662	
mm_45452.1	chr5	67697675	67697875	-	1	NA	NA	NA	89892	NM_001033415	330096	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.015000	0.378109	85(TCCCTTTAAAAG,-,0.00),86(CCCTTTAAAAGG,+,0.00),86(CCCTTTAAAAGG,-,0.00),87(CCTTTAAAAGGA,+,0.00)
mm_48301.1	chr5	138271412	138271612	-	1	NA	NA	NA	1242	NM_001033416	330217	Mm.332774	NM_001033416	ENSMUSG00000075593	Gal3st4	1500031A01Rik	galactose-3-O-sulfotransferase 4	protein-coding	0.010000	0.557214	
mm_72201.1	chr8	72571943	72572143	+	1	NA	NA	NA	-60	NM_144534	74166	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	0.095000	0.761194	
mm_143084.1	chr17	57078314	57078514	-	1	NA	NA	NA	96	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.015000	0.626866	
mm_34270.1	chr4	141423963	141424163	+	1	NA	NA	NA	3284	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.035000	0.611940	
mm_8388.1	chr1	151344976	151345176	-	1	NA	NA	NA	578	NM_001039511	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.110000	0.701493	
mm_102960.1	chr11	69665209	69665409	-	1	NA	NA	NA	861	NM_001291058	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.005000	0.462687	
mm_149205.1	chr19	9980545	9980745	+	1	NA	NA	NA	45	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.010000	0.412935	
mm_57730.1	chr6	128954061	128954261	-	1	NA	NA	NA	-16999	NM_001168224	70809	Mm.439891	NM_027562	ENSMUSG00000000248	Clec2g	4632413B12Rik|Clr-c|Clr-d|Clrc|Clrd|Clrx|Ddv10|Ocilrp1	C-type lectin domain family 2, member g	protein-coding	0.000000	0.522388	
mm_103804.1	chr11	82960578	82960778	-	1	NA	NA	NA	3	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.015000	0.452736	
mm_161165.1	chr13	33323966	33324166	+	1	NA	NA	NA	-11	NM_183197	20709	Mm.474264	NM_183197	ENSMUSG00000038327	Serpinb9f	BC052216|NK21|NK21L1|Spi13|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9f	protein-coding	0.015000	0.517413	
mm_47822.1	chr5	134236808	134237008	-	1	NA	NA	NA	-7283	NR_104383	17969	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.010000	0.497512	
mm_159184.1	chr2	111984207	111984407	-	1	NA	NA	NA	-211	NM_146447	258439	Mm.377502	NM_146447	ENSMUSG00000109528	Olfr1309	MOR245-5	olfactory receptor 1309	protein-coding	0.000000	0.338308	
mm_111035.1	chr12	79191722	79191922	-	1	NA	NA	NA	-3	NM_021557	17252	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c	retinol dehydrogenase 11	protein-coding	0.035000	0.522388	-11(CTCTTTAGAGCA,+,0.00)
mm_3062.1	chr1	134109240	134109440	+	1	NA	NA	NA	-1902	NM_001284524	71884	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.040000	0.502488	
mm_163527.1	chr13	6073766	6073966	+	1	NA	NA	NA	212377	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.010000	0.318408	
mm_4322.1	chr1	171851888	171852088	+	1	NA	NA	NA	12291	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.388060	-51(GCTTTTATAAAA,+,0.00),0(ACTTATAAAGGA,+,0.00)
mm_77869.1	chr9	5345378	5345578	+	1	NA	NA	NA	2	NM_009808	12364	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0.015000	0.457711	12(CTTTTTATGTCC,+,0.00)
mm_50848.1	chr6	54854980	54855180	+	1	NA	NA	NA	38164	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.020000	0.457711	
mm_58772.1	chr7	15917266	15917466	+	1	NA	NA	NA	5005	NM_009156	20364	Mm.42829	NM_009156	ENSMUSG00000041571	Selenow	Sepw1|selW	selenoprotein W	protein-coding	0.020000	0.587065	
mm_6750.1	chr1	83408106	83408306	-	1	NA	NA	NA	-6	NM_172430	77629	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	0.040000	0.606965	
mm_145423.1	chr18	58556135	58556335	+	1	NA	NA	NA	-5	NM_001081072	225579	Mm.258517	NM_001081072	ENSMUSG00000024600	Slc27a6	4732438L20Rik|FACVL2|FATP6|VLCS-H1	solute carrier family 27 (fatty acid transporter), member 6	protein-coding	0.020000	0.492537	
mm_10771.1	chr2	24263356	24263556	+	1	NA	NA	NA	-13498	NM_001146088	54450	Mm.29261	NM_019451	ENSMUSG00000026983	Il1f5	AI413231|Fil1delta|IL-36Ra|IL36RN|Il-1h3|Il1hy1	interleukin 1 family, member 5 (delta)	protein-coding	0.000000	0.378109	
mm_36394.1	chr4	77764277	77764477	-	1	NA	NA	NA	447518	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.358209	
mm_8480.1	chr1	153545258	153545458	-	1	NA	NA	NA	4356	NM_028749	74091	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0.010000	0.447761	
mm_74035.1	chr8	121851247	121851447	+	1	NA	NA	NA	-21778	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.030000	0.542289	
mm_157741.1	chrX	72918331	72918531	-	1	NA	NA	NA	-87	NM_019405	26370	Mm.24643	NM_019405	ENSMUSG00000031347	Cetn2	1110034A02Rik|AI326150|Calt|caltractin	centrin 2	protein-coding	0.080000	0.597015	
mm_158967.1	chr1	93861244	93861444	+	1	NA	NA	NA	0	NM_199366	381334	Mm.482878	NM_199366	ENSMUSG00000094651	Gal3st2	GP3ST|Gm988	galactose-3-O-sulfotransferase 2	protein-coding	0.000000	0.572139	
mm_131253.1	chr16	10700238	10700438	+	1	NA	NA	NA	85198	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.010000	0.557214	-34(CTCTATATAAAG,-,0.00),-32(CTATATAAAGCC,+,0.00)
mm_161076.1	chr12	81379352	81379552	-	1	NA	NA	NA	34	NM_001038995	214321	Mm.444671	NM_001038995	ENSMUSG00000072974	Gm4787	Adam4b|EG214321	predicted gene 4787	protein-coding	0.005000	0.512438	
mm_135262.1	chr16	37956682	37956882	-	1	NA	NA	NA	40286	NM_153394	239845	Mm.228018	NM_153394	ENSMUSG00000046961	Gpr156	Gababl	G protein-coupled receptor 156	protein-coding	0.010000	0.542289	-33(CACTATAAAAGG,-,0.00)
mm_158935.1	chr1	73941907	73942107	-	1	NA	NA	NA	-77541	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.045000	0.666667	
mm_2497.1	chr1	106033569	106033769	+	1	NA	NA	NA	43263	NM_001122675	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.030000	0.398010	
mm_67346.1	chr7	79825641	79825841	-	1	NA	NA	NA	15014	NM_008589	17293	Mm.31472	NM_008589	ENSMUSG00000030543	Mesp2	bHLHc6	mesoderm posterior 2	protein-coding	0.020000	0.532338	
mm_20706.1	chr2	132945935	132946135	-	1	NA	NA	NA	1	NM_198029	241639	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0.010000	0.552239	
mm_45180.1	chr5	51723478	51723678	-	1	NA	NA	NA	-155853	NR_132764	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.010000	0.393035	
mm_128168.1	chr15	34083152	34083352	-	1	NA	NA	NA	533	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.115000	0.726368	
mm_5380.1	chr1	30949779	30949979	-	1	NA	NA	NA	-124	NM_011200	19243	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	0.150000	0.706468	89(GGCTATAAAGGG,-,0.00)
mm_157372.1	chrX	37878410	37878610	-	1	NA	NA	NA	434	NM_001004193	434768	Mm.336025	NM_001004193	ENSMUSG00000064137	Rhox8	Tox	reproductive homeobox 8	protein-coding	0.015000	0.487562	
mm_60372.1	chr7	44465337	44465537	+	1	NA	NA	NA	2	NM_026690	68352	Mm.88478	NM_026690	ENSMUSG00000038704	Aspdh	0610012D14Rik	aspartate dehydrogenase domain containing	protein-coding	0.010000	0.587065	
mm_151263.1	chr19	54045139	54045339	+	1	NA	NA	NA	57	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	0.105000	0.711443	-12(GGCTATAAAACC,-,0.00)
mm_2778.1	chr1	130826562	130826762	+	1	NA	NA	NA	-22	NM_011082	18703	Mm.276414	NM_011082	ENSMUSG00000026417	Pigr	-	polymeric immunoglobulin receptor	protein-coding	0.015000	0.517413	-12(GGCCCTTTAAGA,-,0.00),-11(GCCCTTTAAGAG,-,0.00),-10(CCCTTTAAGAGC,+,0.00),-10(CCCTTTAAGAGC,-,0.00),-9(CCTTTAAGAGCC,+,0.00)
mm_68374.1	chr7	108930058	108930258	-	1	NA	NA	NA	0	NM_175532	244202	Mm.37991	NM_175532	ENSMUSG00000049709	Nlrp10	6430548I20Rik|Nalp10|Napl10|PAN5|Pynod	NLR family, pyrin domain containing 10	protein-coding	0.010000	0.432836	
mm_142069.1	chr17	35697626	35697826	-	1	NA	NA	NA	2864	NM_001198833	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.000000	0.577114	
mm_88711.1	chr10	80151251	80151451	+	1	NA	NA	NA	1669	NM_001305799	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.060000	0.646766	
mm_143494.1	chr17	71475254	71475454	-	1	NA	NA	NA	-11	NM_028887	74355	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0.150000	0.711443	
mm_109732.1	chr12	116485709	116485909	+	1	NA	NA	NA	89	NM_011215	19276	Mm.206054	NM_011215	ENSMUSG00000056553	Ptprn2	4930425H11Rik|IA2beta|PTP-NP|Phol|mKIAA0387|phogrin	protein tyrosine phosphatase, receptor type, N polypeptide 2	protein-coding	0.135000	0.741294	
mm_161188.1	chr13	50250196	50250396	-	1	NA	NA	NA	12	NM_001033438	380882	Mm.425809	NM_001033438	ENSMUSG00000095300	Gm906	-	predicted gene 906	protein-coding	0.010000	0.497512	
mm_129871.1	chr15	83416817	83417017	-	1	NA	NA	NA	15933	NM_011862	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.000000	0.288557	
mm_93800.1	chr10	120898832	120899032	-	1	NA	NA	NA	39	NM_177092	320183	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	0.135000	0.721393	
mm_57664.1	chr6	128487826	128488026	-	1	NA	NA	NA	38794	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.020000	0.522388	
mm_46145.1	chr5	93205270	93205470	-	1	NA	NA	NA	1125	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.025000	0.452736	
mm_76261.1	chr8	83996777	83996977	-	1	NA	NA	NA	-795	NM_001081415	666704	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.140000	0.751244	
mm_53981.1	chr6	6861639	6861839	-	1	NA	NA	NA	-1595	NM_010057	13396	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding	0.010000	0.353234	-33(TTCTATAAAAAG,-,0.00)
mm_66144.1	chr7	31126871	31127071	-	1	NA	NA	NA	52	NM_011322	20266	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	0.145000	0.796020	
mm_172695.1	chr8	61591067	61591267	-	1	NA	NA	NA	2	NM_001293774	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.085000	0.666667	
mm_161113.1	chr12	104722522	104722722	-	1	NA	NA	NA	29330	NM_148948	192119	Mm.21135	NM_148948	ENSMUSG00000041415	Dicer1	1110006F08Rik|D12Ertd7e|mKIAA0928	dicer 1, ribonuclease type III	protein-coding	0.020000	0.467662	
mm_97174.1	chr11	75532012	75532212	+	1	NA	NA	NA	0	NM_001199283	215113	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.080000	0.631841	
mm_124405.1	chr14	115477386	115477586	-	1	NA	NA	NA	-67934	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0.050000	0.537313	
mm_145.1	chr1	11089563	11089763	+	1	NA	NA	NA	96198	NM_029525	109294	Mm.123247	NM_029525	ENSMUSG00000048960	Prex2	6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	protein-coding	0.015000	0.462687	
mm_140987.1	chr17	24737543	24737743	-	1	NA	NA	NA	1050	NM_001346668	27361	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	0.005000	0.447761	
mm_121523.1	chr14	122106996	122107196	+	1	NA	NA	NA	14	NM_080556	68059	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	0.140000	0.706468	
mm_71227.1	chr8	40902467	40902667	+	1	NA	NA	NA	-23666	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.000000	0.398010	
mm_36096.1	chr4	58529850	58530050	-	1	NA	NA	NA	23343	NM_172989	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.000000	0.343284	
mm_112415.1	chr13	3924600	3924800	+	1	NA	NA	NA	5	NM_001033879	238463	Mm.313659	NM_001033879	ENSMUSG00000021216	Tubal3	-	tubulin, alpha-like 3	protein-coding	0.020000	0.482587	
mm_93197.1	chr10	94312488	94312688	-	1	NA	NA	NA	-13885	NR_033209	215472	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	0.040000	0.626866	
mm_19225.1	chr2	84670520	84670720	-	1	NA	NA	NA	88	NM_001033166	72657	Mm.259293	NM_001033166	ENSMUSG00000076437	Selenoh	2700094K13Rik|Selh	selenoprotein H	protein-coding	0.085000	0.606965	
mm_82111.1	chr9	123150764	123150964	+	1	NA	NA	NA	-82	NM_011606	21922	Mm.34588	NM_011606	ENSMUSG00000025784	Clec3b	Tna	C-type lectin domain family 3, member b	protein-coding	0.005000	0.482587	
mm_61478.1	chr7	75655716	75655916	+	1	NA	NA	NA	-192522	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.025000	0.398010	
mm_46054.1	chr5	92137678	92137878	-	1	NA	NA	NA	-160	NM_019490	56041	Mm.15868	NM_019490	ENSMUSG00000029407	Uso1	115kDa|TAP|Vdp	USO1 vesicle docking factor	protein-coding	0.075000	0.731343	
mm_127755.1	chr15	103502978	103503178	+	1	NA	NA	NA	44	NM_008800	18574	Mm.390792	NM_008800	ENSMUSG00000022489	Pde1b	Pde1b1	phosphodiesterase 1B, Ca2+-calmodulin dependent	protein-coding	0.090000	0.726368	
mm_18149.1	chr2	45067043	45067243	-	1	NA	NA	NA	43134	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.010000	0.437811	
mm_116594.1	chr13	48538087	48538287	-	1	NA	NA	NA	85	NR_029725	387244		NR_029725	ENSMUSG00000065421	Mirlet7a-1	Let-7a|Mirnlet7a|Mirnlet7a-1|let-7a-1	microRNA let7a-1	ncRNA	0.000000	0.412935	77(TGCCTTAAAAGC,-,0.00),78(GCCTTAAAAGCA,+,0.00)
mm_164945.1	chr19	4180535	4180735	+	1	NA	NA	NA	-5156	NM_134148	107239	Mm.482310	NM_134148	ENSMUSG00000075289	Carns1	AI790298|Atpgd1|mKIAA1394	carnosine synthase 1	protein-coding	0.010000	0.477612	
mm_44267.1	chr5	5664079	5664279	-	1	NA	NA	NA	53	NM_172447	207686	Mm.319007	NM_172447	ENSMUSG00000040473	Cfap69	4921525K03|A330021E22Rik|AI427898	cilia and flagella associated protein 69	protein-coding	0.065000	0.616915	
mm_66673.1	chr7	45742233	45742433	-	1	NA	NA	NA	-16517	NM_027055	69363	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	0.040000	0.587065	
mm_171198.1	chr3	51210842	51211042	+	1	NA	NA	NA	-13505	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.030000	0.517413	
mm_46232.1	chr5	99217660	99217860	-	1	NA	NA	NA	35167	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.015000	0.393035	
mm_57125.1	chr6	122600084	122600284	-	1	NA	NA	NA	2260	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.005000	0.427861	
mm_45400.1	chr5	66151624	66151824	-	1	NA	NA	NA	230	NM_001127382	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.020000	0.557214	
mm_64291.1	chr7	141857759	141857959	+	1	NA	NA	NA	18787	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.025000	0.477612	
mm_8481.1	chr1	153545290	153545490	-	1	NA	NA	NA	4324	NM_028749	74091	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0.010000	0.437811	
mm_167381.1	chr8	94340466	94340666	+	1	NA	NA	NA	11358	NM_001205311	20497	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.025000	0.587065	
mm_66960.1	chr7	62423323	62423523	-	1	NA	NA	NA	-3284	NM_011746	22652	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	0.020000	0.497512	-38(GGCTTGAAAAGA,-,0.00)
mm_59463.1	chr7	27252092	27252292	+	1	NA	NA	NA	-6569	NM_010950	18223	Mm.458153	NM_010950	ENSMUSG00000063160	Numbl	nbl	numb-like	protein-coding	0.020000	0.557214	
mm_163805.1	chr14	19415938	19416138	-	1	NA	NA	NA	186549	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.338308	
mm_150713.1	chr19	43280682	43280882	+	1	NA	NA	NA	107573	NM_001081257	545291	Mm.442200	NM_001081257	ENSMUSG00000074852	Hpse2	Gm968|Hpa2	heparanase 2	protein-coding	0.020000	0.457711	
mm_148367.1	chr18	88867103	88867303	-	1	NA	NA	NA	27004	NM_018821	54607	Mm.91920	NM_018821	ENSMUSG00000056153	Socs6	1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4	suppressor of cytokine signaling 6	protein-coding	0.005000	0.363184	
mm_158601.1	chrX	151803598	151803798	-	1	NA	NA	NA	416	NM_021523	59026	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	0.100000	0.621891	
mm_59784.1	chr7	28895017	28895217	+	1	NA	NA	NA	13461	NM_001110807	60594	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	0.010000	0.611940	
mm_147357.1	chr18	43373158	43373358	-	1	NA	NA	NA	14	NM_001136086	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.015000	0.452736	-69(TGTTATAAAAGG,-,0.00)
mm_143952.1	chr17	86827457	86827657	-	1	NA	NA	NA	73693	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.025000	0.597015	
mm_31788.1	chr4	63667975	63668175	+	1	NA	NA	NA	-45646	NM_029324	75524	Mm.38543	NM_029324	ENSMUSG00000058935	1700018C11Rik	bM230C2.3	RIKEN cDNA 1700018C11 gene	protein-coding	0.005000	0.417910	
mm_134152.1	chr16	10785906	10786106	-	1	NA	NA	NA	-470	NM_001271603	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.055000	0.681592	
mm_88888.1	chr10	81136410	81136610	+	1	NA	NA	NA	239	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.110000	0.706468	-33(CCTTTAAGACGA,+,0.00)
mm_170369.1	chr18	54698844	54699044	-	1	NA	NA	NA	87200	NR_045400	328957	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	0.070000	0.577114	
mm_165549.1	chr3	9887363	9887563	+	1	NA	NA	NA	-53784	NM_001195031	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.010000	0.452736	
mm_111099.1	chr12	80760606	80760806	-	1	NA	NA	NA	9	NM_001008423	380768	Mm.29367	NM_001008423	ENSMUSG00000062961	Ccdc177	Gm1568	coiled-coil domain containing 177	protein-coding	0.035000	0.492537	
mm_103469.1	chr11	76479048	76479248	-	1	NA	NA	NA	-10683	NM_001291186	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.020000	0.522388	
mm_72285.1	chr8	75109480	75109680	+	1	NA	NA	NA	71	NM_008566	17218	Mm.5048	NM_008566	ENSMUSG00000005410	Mcm5	AA617332|AI324988|AL033333|Cdc46|Mcmd5|P1-CDC46	minichromosome maintenance complex component 5	protein-coding	0.105000	0.646766	
mm_114149.1	chr13	55369671	55369871	+	1	NA	NA	NA	39	NM_016758	51791	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	0.025000	0.557214	
mm_82745.1	chr9	26803536	26803736	-	1	NA	NA	NA	2781	NM_153803	244757	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0.015000	0.502488	
mm_83133.1	chr9	40435064	40435264	-	1	NA	NA	NA	20600	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.005000	0.417910	
mm_30139.1	chr3	142285343	142285543	-	1	NA	NA	NA	106407	NM_022554	56376	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0.010000	0.383085	
mm_152837.1	chr19	23357475	23357675	-	1	NA	NA	NA	-83678	NM_001252684	226026	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	0.010000	0.393035	
mm_94202.1	chr11	3102175	3102375	+	1	NA	NA	NA	-21746	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.020000	0.353234	
mm_48867.1	chr5	150062064	150062264	-	1	NA	NA	NA	43489	NM_001289566	140498	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	0.030000	0.482587	
mm_159895.1	chr6	30243656	30243856	-	1	NA	NA	NA	47	NM_001169577	22214	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0.015000	0.512438	
mm_131460.1	chr16	16983339	16983539	+	1	NA	NA	NA	57	NM_001038663	26413	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	0.110000	0.666667	
mm_145263.1	chr18	52646083	52646283	+	1	NA	NA	NA	-37	NM_030097	78414	Mm.273327	NM_030097	ENSMUSG00000024532	1700034E13Rik	-	RIKEN cDNA 1700034E13 gene	protein-coding	0.005000	0.507463	-34(CCTCATAAAGTG,+,0.00)
mm_109565.1	chr12	111966712	111966912	+	1	NA	NA	NA	165	NM_027360	70257	Mm.318	NM_027360	ENSMUSG00000021290	2010107E04Rik	9430003J03Rik|AU043134|AV124504|Mp68	RIKEN cDNA 2010107E04 gene	protein-coding	0.080000	0.666667	
mm_144500.1	chr18	24470783	24470983	+	1	NA	NA	NA	12	NM_026529	68046	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	0.090000	0.592040	
mm_75112.1	chr8	34154950	34155150	-	1	NA	NA	NA	487	NM_026432	67887	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	0.050000	0.507463	
mm_109952.1	chr12	11436404	11436604	-	1	NA	NA	NA	145	NM_012038	26950	Mm.27005	NM_012038	ENSMUSG00000054459	Vsnl1	VILIP|Vnsl1	visinin-like 1	protein-coding	0.050000	0.497512	14(TCCTAGAAAAGG,-,0.00)
mm_48116.1	chr5	137138165	137138365	-	1	NA	NA	NA	-22058	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.055000	0.567164	
mm_146501.1	chr18	3299401	3299601	-	1	NA	NA	NA	55	NM_001110853	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.005000	0.417910	
mm_138978.1	chr17	45456019	45456219	+	1	NA	NA	NA	18819	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.055000	0.467662	-34(CTGCATAAAAAG,-,0.00)
mm_88730.1	chr10	80226674	80226874	+	1	NA	NA	NA	176	NM_023431	68114	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	0.160000	0.815920	
mm_146439.1	chr18	84934549	84934749	+	1	NA	NA	NA	-376	NM_015798	50764	Mm.28369	NM_015798	ENSMUSG00000034391	Fbxo15	AU019763|Fbx15|ecat3	F-box protein 15	protein-coding	0.005000	0.457711	
mm_123430.1	chr14	64440756	64440956	-	1	NA	NA	NA	170	NM_001253715	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.080000	0.636816	
mm_143746.1	chr17	81520085	81520285	-	1	NA	NA	NA	218202	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.010000	0.353234	
mm_137792.1	chr17	29660560	29660760	+	1	NA	NA	NA	65	NM_028791	74157	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	0.135000	0.746269	
mm_58258.1	chr6	145122628	145122828	-	1	NA	NA	NA	989	NM_008511	16970	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.025000	0.378109	
mm_85705.1	chr9	108126451	108126651	-	1	NA	NA	NA	-7167	NR_126078	76873	Mm.436935	NR_126077	ENSMUSG00000102224	4930447F24Rik	-	RIKEN cDNA 4930447F24 gene	ncRNA	0.020000	0.621891	
mm_16691.1	chr2	6884830	6885030	-	1	NA	NA	NA	66	NM_010160	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.025000	0.467662	68(CTGCTTTTAAGG,-,0.00),70(GCTTTTAAGGTA,+,0.00)
mm_96739.1	chr11	69777506	69777706	+	1	NA	NA	NA	11694	NM_029348	75580	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0.025000	0.582090	
mm_155049.1	chrX	42152084	42152284	+	1	NA	NA	NA	1483	NM_021465	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.050000	0.582090	
mm_60438.1	chr7	44476865	44477065	+	1	NA	NA	NA	6618	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.398010	
mm_68839.1	chr7	126351471	126351671	-	1	NA	NA	NA	16474	NR_106025	102466797		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.015000	0.507463	
mm_75773.1	chr8	69994924	69995124	-	1	NA	NA	NA	1360	NM_001286450	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.005000	0.388060	
mm_165009.1	chr19	25383467	25383667	+	1	NA	NA	NA	-122139	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.030000	0.572139	
mm_35986.1	chr4	55477292	55477492	-	1	NA	NA	NA	55083	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.010000	0.537313	
mm_55214.1	chr6	52225147	52225347	-	1	NA	NA	NA	2123	NM_010456	15405	Mm.4694	NM_010456	ENSMUSG00000038227	Hoxa9	D6a9|Hox-1.7	homeobox A9	protein-coding	0.060000	0.636816	
mm_131620.1	chr16	19760806	19761006	+	1	NA	NA	NA	672	NM_001159407	108105	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	0.050000	0.616915	
mm_170848.1	chr2	177600262	177600462	+	1	NA	NA	NA	102136	NR_036450	433520	Mm.425117	NM_001024825		Gm14403	OTTMUSG00000016571	predicted gene 14403	ncRNA	0.015000	0.492537	
mm_121006.1	chr14	79516471	79516671	+	1	NA	NA	NA	897	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.015000	0.383085	
mm_67959.1	chr7	100514711	100514911	-	1	NA	NA	NA	4	NM_153527	69387	Mm.278554	NM_153527	ENSMUSG00000030708	Dnajb13	1700014P03Rik|Tsarg	DnaJ heat shock protein family (Hsp40) member B13	protein-coding	0.025000	0.517413	
mm_151114.1	chr19	47864413	47864613	+	1	NA	NA	NA	-1032	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.010000	0.492537	
mm_51973.1	chr6	91758528	91758728	+	1	NA	NA	NA	48765	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.005000	0.293532	
mm_140776.1	chr17	17876897	17877097	-	1	NA	NA	NA	6942	NM_013521	14293	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0.010000	0.482587	
mm_10309.1	chr2	11172091	11172291	+	1	NA	NA	NA	-191	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.090000	0.701493	
mm_59593.1	chr7	28137339	28137539	+	1	NA	NA	NA	7973	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.015000	0.497512	
mm_9032.1	chr1	166681745	166681945	-	1	NA	NA	NA	0	NM_172844	240894	Mm.246610	NM_172844	ENSMUSG00000026560	Fmo9	4831428F09Rik	flavin containing monooxygenase 9	protein-coding	0.005000	0.383085	-34(AGCTATAAAAGA,-,0.00)
mm_91556.1	chr10	39960114	39960314	-	1	NA	NA	NA	-61	NM_001173500	100041085	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	0.035000	0.527363	
mm_76565.1	chr8	88636025	88636225	-	1	NA	NA	NA	3	NM_027840	71607	Mm.270607	NM_027840	ENSMUSG00000031662	Snx20	9130017C17Rik	sorting nexin 20	protein-coding	0.015000	0.482587	
mm_67294.1	chr7	78913781	78913981	-	1	NA	NA	NA	116	NM_020583	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.015000	0.582090	
mm_20654.1	chr2	132102584	132102784	-	1	NA	NA	NA	42424	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.025000	0.527363	-32(TCATATAGAGCC,+,0.00)
mm_89277.1	chr10	87861224	87861424	+	1	NA	NA	NA	213	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.020000	0.477612	
mm_50067.1	chr6	41217985	41218185	+	1	NA	NA	NA	-84187	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.005000	0.477612	
mm_22857.1	chr3	28559058	28559258	+	1	NA	NA	NA	-138745	NM_031197	20526	Mm.18443	NM_031197	ENSMUSG00000027690	Slc2a2	AI266973|Glut-2|Glut2	solute carrier family 2 (facilitated glucose transporter), member 2	protein-coding	0.000000	0.452736	
mm_148316.1	chr18	83768050	83768250	-	1	NA	NA	NA	318412	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.015000	0.537313	
mm_22920.1	chr3	31095815	31096015	+	1	NA	NA	NA	857	NM_001039090	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.035000	0.547264	
mm_53488.1	chr6	135083977	135084177	+	1	NA	NA	NA	18415	NM_181444	232431	Mm.23575	NM_181444	ENSMUSG00000046733	Gprc5a	Rai3|Raig1	G protein-coupled receptor, family C, group 5, member A	protein-coding	0.015000	0.527363	
mm_148512.1	chr19	4231845	4232045	+	1	NA	NA	NA	52	NM_027196	69745	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0.035000	0.587065	
mm_95401.1	chr11	49722789	49722989	+	1	NA	NA	NA	-10167	NM_212484	104625	Mm.247113	NM_212484	ENSMUSG00000020362	Cnot6	CCR4	CCR4-NOT transcription complex, subunit 6	protein-coding	0.025000	0.417910	
mm_29448.1	chr3	110251275	110251475	-	1	NA	NA	NA	-376	NR_024139	99890	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	0.020000	0.497512	
mm_1414.1	chr1	67157702	67157902	+	1	NA	NA	NA	34775	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.452736	
mm_77025.1	chr8	108722665	108722865	-	1	NA	NA	NA	8121	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.015000	0.522388	
mm_157162.1	chrX	9465540	9465740	-	1	NA	NA	NA	3684	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.015000	0.502488	
mm_149325.1	chr19	10842700	10842900	+	1	NA	NA	NA	256	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.010000	0.547264	
mm_170827.1	chr2	176830943	176831143	+	1	NA	NA	NA	32443	NM_001205057	100039123	Mm.389409	NM_001205057	ENSMUSG00000078877	Gm14295	OTTMUSG00000016219	predicted gene 14295	protein-coding	0.010000	0.482587	
mm_152484.1	chr19	11049356	11049556	-	1	NA	NA	NA	1110	NR_102366	107350	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.005000	0.333333	
mm_161507.1	chr15	98220891	98221091	-	1	NA	NA	NA	65	NM_001011780	634104	Mm.259785	NM_001011780	ENSMUSG00000090129	Olfr287	MOR286-1	olfactory receptor 287	protein-coding	0.010000	0.547264	58(CCCTATAAATGC,+,0.00),58(CCCTATAAATGC,-,0.00)
mm_120086.1	chr14	57798567	57798767	+	1	NA	NA	NA	243	NR_037238	100526476		NR_037238	ENSMUSG00000092784	Mir3077	mir-3077|mmu-mir-3077	microRNA 3077	ncRNA	0.120000	0.671642	
mm_89463.1	chr10	93309944	93310144	+	1	NA	NA	NA	1115	NM_001322268	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.035000	0.487562	-35(CCCCTTAAAAAA,-,0.00)
mm_142181.1	chr17	36271799	36271999	-	1	NA	NA	NA	105	NM_024468	79263	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0.065000	0.567164	
mm_126169.1	chr15	78560904	78561104	+	1	NA	NA	NA	11779	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.010000	0.502488	
mm_145819.1	chr18	65430985	65431185	+	1	NA	NA	NA	88	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.100000	0.696517	
mm_21194.1	chr2	155414890	155415090	-	1	NA	NA	NA	25793	NM_001242558	56406	Mm.27592	NM_019825	ENSMUSG00000038369	Ncoa6	AIB3|ASC-2|ASC2|NRC|Ncoa7|PRIP|RAP250|mKIAA0181	nuclear receptor coactivator 6	protein-coding	0.025000	0.452736	
mm_14901.1	chr2	150107501	150107701	+	1	NA	NA	NA	29077	NM_023266	104348	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding	0.005000	0.442786	
mm_84300.1	chr9	63398947	63399147	-	1	NA	NA	NA	197	NM_027090	69478	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	0.095000	0.666667	
mm_7903.1	chr1	133660734	133660934	-	1	NA	NA	NA	51	NM_001166552	667118	Mm.245357	NM_001166552	ENSMUSG00000094410	Zbed6	Gm8466|MGR	zinc finger, BED type containing 6	protein-coding	0.050000	0.557214	
mm_92041.1	chr10	62494779	62494979	-	1	NA	NA	NA	-8074	NM_133672	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.015000	0.402985	
mm_6122.1	chr1	64302857	64303057	-	1	NA	NA	NA	-181568	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.020000	0.532338	
mm_87555.1	chr10	54118020	54118220	+	1	NA	NA	NA	42198	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.010000	0.477612	
mm_58316.1	chr6	146424920	146425120	-	1	NA	NA	NA	77203	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.005000	0.393035	
mm_39556.1	chr5	22745950	22746150	+	1	NA	NA	NA	-143	NM_001081231	269629	Mm.371712	NM_029990	ENSMUSG00000106379	Lhfpl3	A930031L14Rik	lipoma HMGIC fusion partner-like 3	protein-coding	0.085000	0.716418	
mm_65611.1	chr7	27486690	27486890	-	1	NA	NA	NA	-163	NM_018820	55942	Mm.153684	NM_018820	ENSMUSG00000008384	Sertad1	1110032C13Rik|AV000455|AW456625|Sei-1|Sei1|TRIP-Br1	SERTA domain containing 1	protein-coding	0.050000	0.611940	78(TACTTTAAAAAG,-,0.00)
mm_136308.1	chr16	91647540	91647740	-	1	NA	NA	NA	-184	NM_019973	20658	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	0.100000	0.621891	
mm_169476.1	chr14	69337097	69337297	+	1	NA	NA	NA	46	NM_026174	67464	Mm.489765	NM_026174	ENSMUSG00000095463	Entpd4	1200014F22Rik|4930513O14Rik|A430102M06Rik|AI414893|Lysal1|mKIAA0392	ectonucleoside triphosphate diphosphohydrolase 4	protein-coding	0.165000	0.771144	
mm_34578.1	chr4	150119203	150119403	+	1	NA	NA	NA	-41	NM_019741	56485	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	0.045000	0.606965	
mm_93015.1	chr10	87492715	87492915	-	1	NA	NA	NA	845	NM_008553	17172	Mm.136217	NM_008553	ENSMUSG00000020052	Ascl1	AI225900|ASH1|Mash1|bHLHa46	achaete-scute family bHLH transcription factor 1	protein-coding	0.125000	0.711443	
mm_82053.1	chr9	122572402	122572602	+	1	NA	NA	NA	1	NR_015610	319626	Mm.186748	NR_015610	ENSMUSG00000097736	9530059O14Rik	-	RIKEN cDNA 9530059O14 gene	ncRNA	0.145000	0.751244	
mm_54112.1	chr6	17459519	17459719	-	1	NA	NA	NA	-4338	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.010000	0.512438	
mm_77500.1	chr8	122629840	122630040	-	1	NA	NA	NA	-7205	NM_001007462	382035	Mm.25449	NM_001007462	ENSMUSG00000069867	Pabpn1l	Gm1108|Pabpnl1|ePABP2	poly(A)binding protein nuclear 1-like	protein-coding	0.005000	0.353234	
mm_153088.1	chr19	32389590	32389790	-	1	NA	NA	NA	474	NR_033198	67188	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	0.060000	0.611940	
mm_13963.1	chr2	121414546	121414746	+	1	NA	NA	NA	744	NM_007952	14827	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	0.000000	0.472637	
mm_3986.1	chr1	164307572	164307772	+	1	NA	NA	NA	0	NM_138314	171567	Mm.219428	NM_138314	ENSMUSG00000026575	Nme7	D530024H21Rik|Nm23-M7|Nm23-r7	NME/NM23 family member 7	protein-coding	0.045000	0.532338	
mm_53721.1	chr6	143955824	143956024	+	1	NA	NA	NA	-8818	NM_001347506	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.010000	0.447761	-33(CCTTATAAATGT,+,0.00)
mm_97255.1	chr11	75756889	75757089	+	1	NA	NA	NA	24102	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.040000	0.467662	
mm_21896.1	chr2	166155632	166155832	-	1	NA	NA	NA	-49	NM_028072	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.035000	0.611940	
mm_135166.1	chr16	35926853	35927053	-	1	NA	NA	NA	-11517	NM_030253	80285	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.000000	0.412935	
mm_95679.1	chr11	54124413	54124613	+	1	NA	NA	NA	23589	NM_011031	18452	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.020000	0.587065	
mm_49105.1	chr6	8259204	8259404	+	1	NA	NA	NA	16	NM_001302353	100036521	Mm.446106	NM_001302353	ENSMUSG00000089862	Umad1	Gm16039|OTTMUSG00000029336	UMAP1-MVP12 associated (UMA) domain containing 1	protein-coding	0.095000	0.676617	
mm_7817.1	chr1	131911036	131911236	-	1	NA	NA	NA	678	NM_001145804	98415	Mm.246869	NM_175294	ENSMUSG00000026434	Nucks1	2700010L10Rik|8430423A01Rik|AI647518|C78391|Nucks	nuclear casein kinase and cyclin-dependent kinase substrate 1	protein-coding	0.110000	0.716418	
mm_73840.1	chr8	117461107	117461307	+	1	NA	NA	NA	1942	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.030000	0.378109	
mm_69187.1	chr7	127272386	127272586	-	1	NA	NA	NA	1573	NM_009266	20768	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0.030000	0.532338	
mm_169196.1	chr13	66113351	66113551	+	1	NA	NA	NA	-2	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.020000	0.527363	
mm_172262.1	chr6	75296607	75296807	-	1	NA	NA	NA	-1825686	NR_108032	73408	Mm.233629	NR_108032	ENSMUSG00000107408	1700065L07Rik	-	RIKEN cDNA 1700065L07 gene	ncRNA	0.010000	0.532338	
mm_135149.1	chr16	35857581	35857781	-	1	NA	NA	NA	13701	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.005000	0.398010	
mm_130942.1	chr15	103249232	103249432	-	1	NA	NA	NA	2344	NM_001302338	18022	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.000000	0.517413	
mm_86379.1	chr9	123845094	123845294	-	1	NA	NA	NA	6467	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.000000	0.497512	
mm_43739.1	chr5	139822262	139822462	+	1	NA	NA	NA	4481	NM_025604	66506	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	0.010000	0.547264	
mm_154488.1	chrM	5711	5911	-	1	NA	NA	NA	NA	NA									0.015000	0.412935	
mm_70488.1	chr8	12439251	12439451	+	1	NA	NA	NA	43832	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.010000	0.522388	
mm_149609.1	chr19	16385587	16385787	+	1	NA	NA	NA	-49980	NM_008137	14675	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.020000	0.393035	55(GCTTTTATACAA,+,0.00)
mm_79591.1	chr9	58279564	58279764	+	1	NA	NA	NA	26500	NM_026942	69106	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.010000	0.422886	
mm_36566.1	chr4	87806169	87806369	-	1	NA	NA	NA	54	NM_001286158	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.015000	0.462687	
mm_139571.1	chr17	57060646	57060846	+	1	NA	NA	NA	-883	NM_025877	66972	Mm.23720	NM_025877	ENSMUSG00000046329	Slc25a23	2310067G05Rik|SCaMC-3	solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23	protein-coding	0.060000	0.522388	
mm_168779.1	chr12	17873770	17873970	-	1	NA	NA	NA	183056	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.020000	0.562189	
mm_52959.1	chr6	123123301	123123501	+	1	NA	NA	NA	85	NM_001170333	26888	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0.010000	0.412935	
mm_161307.1	chr14	34460393	34460593	-	1	NA	NA	NA	42053	NM_009758	12166	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK3|AU045487|BMPR-IA|Bmpr	bone morphogenetic protein receptor, type 1A	protein-coding	0.020000	0.407960	
mm_91303.1	chr10	24916586	24916786	-	1	NA	NA	NA	6022	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.005000	0.283582	-71(TCTTTTATATGC,+,0.00)
mm_124278.1	chr14	103037034	103037234	-	1	NA	NA	NA	-3331	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.010000	0.457711	
mm_149805.1	chr19	23758700	23758900	+	1	NA	NA	NA	-76	NM_177034	319924	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.200000	0.840796	
mm_101516.1	chr11	32527446	32527646	-	1	NA	NA	NA	28	NM_027031	69306	Mm.288704	NM_027031	ENSMUSG00000044056	Efcab9	1700007I06Rik|4930403C08Rik	EF-hand calcium binding domain 9	protein-coding	0.015000	0.492537	
mm_3819.1	chr1	159241212	159241412	+	1	NA	NA	NA	8986	NM_011931	26374	Mm.328135	NM_011931	ENSMUSG00000040782	Rfwd2	AI316802|C80879|Cop1	ring finger and WD repeat domain 2	protein-coding	0.005000	0.338308	
mm_172218.1	chr6	6351538	6351738	-	1	NA	NA	NA	102979	NR_136905	101056138	Mm.389085	NR_136904	ENSMUSG00000093482	Gm20619	-	predicted gene 20619	ncRNA	0.030000	0.542289	
mm_130808.1	chr15	101712804	101713004	-	1	NA	NA	NA	-13	NM_027011	110308	Mm.451847	NM_027011	ENSMUSG00000061527	Krt5	3300001P10Rik|AW146334|CK5|K5|Krt2-5|Tfip8	keratin 5	protein-coding	0.030000	0.582090	-34(GGGGATAAAAGG,-,0.00)
mm_46534.1	chr5	105700477	105700677	-	1	NA	NA	NA	-233	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.115000	0.716418	
mm_59224.1	chr7	24636454	24636654	+	1	NA	NA	NA	-16	NM_133743	72434	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	0.040000	0.631841	
mm_51781.1	chr6	88198232	88198432	+	1	NA	NA	NA	-332	NM_008090	14461	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.050000	0.616915	
mm_68525.1	chr7	112158331	112158531	-	1	NA	NA	NA	626	NM_015814	50781	Mm.55143	NM_015814	ENSMUSG00000030772	Dkk3	AW061014|C87148	dickkopf WNT signaling pathway inhibitor 3	protein-coding	0.080000	0.681592	
mm_67163.1	chr7	73545545	73545745	-	1	NA	NA	NA	-3899	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.000000	0.303483	-69(CTCCTTTAAAGA,-,0.00)
mm_168317.1	chr11	113136012	113136212	+	1	NA	NA	NA	65726	NR_015556	72386	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.020000	0.507463	
mm_20523.1	chr2	130839971	130840171	-	1	NA	NA	NA	74	NM_029432	228602	Mm.271990	NM_028367	ENSMUSG00000027309	4930402H24Rik	2810487F15Rik|AI413763|C78926	RIKEN cDNA 4930402H24 gene	protein-coding	0.135000	0.791045	
mm_102966.1	chr11	69665799	69665999	-	1	NA	NA	NA	271	NM_001291058	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.020000	0.582090	
mm_8005.1	chr1	134773166	134773366	-	1	NA	NA	NA	30455	NR_015606	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.020000	0.432836	
mm_18353.1	chr2	58160991	58161191	-	1	NA	NA	NA	-969	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.040000	0.432836	
mm_115546.1	chr13	8858712	8858912	-	1	NA	NA	NA	12232	NM_001039389	207615	Mm.284654	NM_172445	ENSMUSG00000021147	Wdr37	-	WD repeat domain 37	protein-coding	0.005000	0.427861	
mm_73687.1	chr8	111556517	111556717	+	1	NA	NA	NA	18274	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.005000	0.542289	
mm_133346.1	chr16	81269610	81269810	+	1	NA	NA	NA	69013	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.010000	0.328358	
mm_124576.1	chr14	124572281	124572481	-	1	NA	NA	NA	104746	NM_207667	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.000000	0.318408	-75(TCATTTAAACCC,+,0.00),-4(CTCTATATAAGG,-,0.00)
mm_100735.1	chr11	3983893	3984093	-	1	NA	NA	NA	357	NM_016922	53897	Mm.103414	NM_016922	ENSMUSG00000049721	Gal3st1	Cst|Gcst	galactose-3-O-sulfotransferase 1	protein-coding	0.015000	0.562189	
mm_141372.1	chr17	29007844	29008044	-	1	NA	NA	NA	-7	NM_134115	106504	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0.125000	0.736318	
mm_84050.1	chr9	58118725	58118925	-	1	NA	NA	NA	-2	NM_001166282	382077	Mm.335193	NM_029212	ENSMUSG00000037716	Ccdc33	4930535E21Rik|Gm1117|Tzip1	coiled-coil domain containing 33	protein-coding	0.005000	0.557214	83(GGCCTTTAGAGG,-,0.00),84(GCCTTTAGAGGT,+,0.00)
mm_78896.1	chr9	44638617	44638817	+	1	NA	NA	NA	33825	NM_181324	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.030000	0.472637	
mm_160967.1	chr11	99780604	99780804	-	1	NA	NA	NA	-61	NM_001085547	665992	Mm.473674	NM_001085547	ENSMUSG00000089724	Krtap4-8	OTTMUSG00000002541	keratin associated protein 4-8	protein-coding	0.000000	0.487562	-34(GGGTATAAAAGG,-,0.00)
mm_142917.1	chr17	53682846	53683046	-	1	NA	NA	NA	6369	NM_028232	72415	Mm.153202	NM_028232	ENSMUSG00000023940	Sgol1	3300001M08Rik|C81037|Sgo1	shugoshin-like 1 (S. pombe)	protein-coding	0.020000	0.363184	
mm_120904.1	chr14	75962370	75962570	+	1	NA	NA	NA	7467	NM_026214	67516	Mm.390712	NM_026214	ENSMUSG00000046523	Kctd4	2210017A09Rik|AU017169	potassium channel tetramerisation domain containing 4	protein-coding	0.030000	0.472637	59(TTTTTTAAAAGG,-,0.00)
mm_107045.1	chr12	15814817	15815017	+	1	NA	NA	NA	1868	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.085000	0.611940	
mm_162918.1	chr10	120462800	120463000	-	1	NA	NA	NA	13569	NM_001347170	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0.020000	0.472637	-62(TCTTTTATGGTG,+,0.00),-33(CTCTTTATAGCA,+,0.00)
mm_17382.1	chr2	27021791	27021991	-	1	NA	NA	NA	6107	NM_172659	227659	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.020000	0.626866	
mm_65107.1	chr7	19309596	19309796	-	1	NA	NA	NA	349	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.085000	0.626866	
mm_19972.1	chr2	118218531	118218731	-	1	NA	NA	NA	38335	NM_027759	71313	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	0.010000	0.402985	
mm_130228.1	chr15	96285621	96285821	-	1	NA	NA	NA	-1801	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.100000	0.756219	
mm_114246.1	chr13	56629629	56629829	+	1	NA	NA	NA	20126	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.010000	0.537313	
mm_106073.1	chr11	116173050	116173250	-	1	NA	NA	NA	-4972	NM_172571	217335	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.000000	0.388060	
mm_91510.1	chr10	37137184	37137384	-	1	NA	NA	NA	1642	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.085000	0.716418	
mm_82620.1	chr9	21794968	21795168	-	1	NA	NA	NA	3478	NM_145611	235041	Mm.257371	NM_145611	ENSMUSG00000032194	Kank2	AI504612|Ankrd25|BC010245	KN motif and ankyrin repeat domains 2	protein-coding	0.045000	0.616915	
mm_156391.1	chrX	139800874	139801074	+	1	NA	NA	NA	166	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.040000	0.522388	
mm_117069.1	chr13	59145741	59145941	-	1	NA	NA	NA	338144	NM_001025074	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.025000	0.492537	
mm_94252.1	chr11	3330796	3330996	+	1	NA	NA	NA	165	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.020000	0.552239	
mm_14267.1	chr2	128698781	128698981	+	1	NA	NA	NA	-116	NM_008587	17289	Mm.239655	NM_008587	ENSMUSG00000014361	Mertk	Eyk|Mer|Nyk|nmf12	c-mer proto-oncogene tyrosine kinase	protein-coding	0.080000	0.696517	
mm_4983.1	chr1	191717912	191718112	+	1	NA	NA	NA	-12	NM_172266	226856	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0.160000	0.820896	
mm_3596.1	chr1	151499908	151500108	+	1	NA	NA	NA	815	NM_011277	19821	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0.055000	0.462687	
mm_8980.1	chr1	165652486	165652686	-	1	NA	NA	NA	-18045	NM_001083897	68481	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.000000	0.547264	
mm_139772.1	chr17	64721653	64721853	+	1	NA	NA	NA	-45358	NR_105051	101202683	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.010000	0.318408	
mm_168763.1	chr1	21201726	21201926	-	1	NA	NA	NA	-16749	NM_001290679	75712	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	0.060000	0.646766	
mm_127679.1	chr15	102921086	102921286	+	1	NA	NA	NA	55	NM_010464	15422	Mm.207062	NM_010464	ENSMUSG00000001655	Hoxc13	-	homeobox C13	protein-coding	0.080000	0.616915	-27(GTTTTTAAAAAG,-,0.00)
mm_108539.1	chr12	84285275	84285475	+	1	NA	NA	NA	79	NM_001252626	77219	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	0.080000	0.601990	-12(CCGCAGAAAAGG,-,0.00)
mm_12374.1	chr2	69822438	69822638	+	1	NA	NA	NA	168	NM_177784	277396	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	0.040000	0.557214	
mm_166196.1	chr5	37245658	37245858	+	1	NA	NA	NA	-6	NM_007765	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.100000	0.706468	
mm_14882.1	chr2	148835095	148835295	+	1	NA	NA	NA	48	NM_009979	13013	Mm.21005	NM_009979	ENSMUSG00000027445	Cst9	M12|cresp|testatin	cystatin 9	protein-coding	0.000000	0.502488	
mm_122388.1	chr14	40937375	40937575	-	1	NA	NA	NA	10734	NM_001316748	52588	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.015000	0.432836	
mm_28281.1	chr3	88950317	88950517	-	1	NA	NA	NA	-135	NM_001164533	65111	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0.135000	0.751244	
mm_173153.1	chrX	32487861	32488061	+	1	NA	NA	NA	-72094	NM_001168334	100040482	Mm.479861	NM_001168334	ENSMUSG00000096194	Btbd35f2	Gm2799	BTB domain containing 35, family member 2	protein-coding	0.040000	0.512438	-29(TTCTATAAAAGT,-,0.00)
mm_112980.1	chr13	21312130	21312330	+	1	NA	NA	NA	27	NM_145451	75512	Mm.46195	NM_145451	ENSMUSG00000004341	Gpx6	1700020G18Rik|Ry2d1|olfactory	glutathione peroxidase 6	protein-coding	0.005000	0.507463	
mm_83790.1	chr9	52168796	52168996	-	1	NA	NA	NA	-785	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.055000	0.646766	
mm_111564.1	chr12	101646177	101646377	-	1	NA	NA	NA	65296	NM_028924	74413	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	0.005000	0.388060	
mm_85027.1	chr9	88460924	88461124	-	1	NA	NA	NA	21373	NM_019666	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.010000	0.462687	
mm_124408.1	chr14	115477514	115477714	-	1	NA	NA	NA	-68062	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0.040000	0.552239	
mm_128209.1	chr15	36140328	36140528	-	1	NA	NA	NA	-28	NM_001195748	626596	Mm.321798	NM_001195748	ENSMUSG00000037627	Rgs22	-	regulator of G-protein signalling 22	protein-coding	0.095000	0.731343	
mm_43358.1	chr5	135188367	135188567	+	1	NA	NA	NA	1144	NM_011714	22385	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.025000	0.437811	
mm_156253.1	chrX	136707908	136708108	+	1	NA	NA	NA	-57	NM_146236	237052	Mm.40713	NM_146236	ENSMUSG00000049536	Tceal1	0610011M09Rik|BC011290|P21|SIIR|pp21	transcription elongation factor A (SII)-like 1	protein-coding	0.035000	0.542289	
mm_115696.1	chr13	14063199	14063399	-	1	NA	NA	NA	189	NM_001331119	14593	Mm.148039	NM_010282	ENSMUSG00000021302	Ggps1	1810026C22Rik|9530089B04Rik|AI843169|C79210	geranylgeranyl diphosphate synthase 1	protein-coding	0.065000	0.552239	
mm_137598.1	chr17	28177072	28177272	+	1	NA	NA	NA	-246	NM_172617	224656	Mm.267359	NM_172617	ENSMUSG00000024220	Zfp523	2810027J07|BC025615|Znf76	zinc finger protein 523	protein-coding	0.150000	0.751244	
mm_66082.1	chr7	30956769	30956969	-	1	NA	NA	NA	-66	NM_011680	22282	Mm.322453	NM_011680	ENSMUSG00000058239	Usf2	Usf-2|bHLHb12	upstream transcription factor 2	protein-coding	0.125000	0.781095	
mm_153739.1	chr19	44695211	44695411	-	1	NA	NA	NA	-62083	NM_011037	18504	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0.010000	0.631841	
mm_153053.1	chr19	32103065	32103265	-	1	NA	NA	NA	-25	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.030000	0.532338	
mm_12413.1	chr2	70532968	70533168	+	1	NA	NA	NA	24249	NM_025744	66748	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	0.025000	0.487562	
mm_142497.1	chr17	46030837	46031037	-	1	NA	NA	NA	1440	NM_001287058	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.080000	0.721393	
mm_58094.1	chr6	137519774	137519974	-	1	NA	NA	NA	21	NM_001271589	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.015000	0.542289	
mm_109567.1	chr12	111971514	111971714	+	1	NA	NA	NA	55	NM_029056	74691	Mm.60648	NM_029056	ENSMUSG00000054003	Tdrd9	4930441E05Rik	tudor domain containing 9	protein-coding	0.055000	0.597015	
mm_90039.1	chr10	115817235	115817435	+	1	NA	NA	NA	51	NM_001168679	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	0.015000	0.393035	
mm_77883.1	chr9	7280764	7280964	+	1	NA	NA	NA	8350	NM_008607	17386	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0.005000	0.343284	
mm_36278.1	chr4	63744958	63745158	-	1	NA	NA	NA	55	NM_177371	326623	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0.010000	0.537313	
mm_99338.1	chr11	101468143	101468343	+	1	NA	NA	NA	-95	NM_009708	11858	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn	Rho family GTPase 2	protein-coding	0.145000	0.830846	
mm_38831.1	chr4	149143363	149143563	-	1	NA	NA	NA	-5863	NM_027263	69928	Mm.260893	NM_027263	ENSMUSG00000073705	Apitd1	2610040C18Rik|2810407L01Rik|CENP-S	apoptosis-inducing, TAF9-like domain 1	protein-coding	0.040000	0.457711	-24(TGCTTTTAAAAG,-,0.00),-23(GCTTTTAAAAGT,+,0.00)
mm_82565.1	chr9	21075153	21075353	-	1	NA	NA	NA	335	NR_106050	102465656		NR_106050	ENSMUSG00000098907	Mir7082	Gm27933|mmu-mir-7082	microRNA 7082	ncRNA	0.005000	0.427861	
mm_24822.1	chr3	95650798	95650998	+	1	NA	NA	NA	-7823	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.010000	0.527363	
mm_852.1	chr1	52119446	52119646	+	1	NA	NA	NA	-76	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.080000	0.636816	
mm_149092.1	chr19	8929364	8929564	+	1	NA	NA	NA	-108	NM_009073	19881	Mm.426094	NM_009073	ENSMUSG00000071648	Rom1	M101156|Rgsc1156|Rom-1|Rosp1|Tspan23	rod outer segment membrane protein 1	protein-coding	0.065000	0.651741	
mm_133540.1	chr16	91064143	91064343	+	1	NA	NA	NA	4902	NM_001163695	74387	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.010000	0.527363	
mm_6160.1	chr1	65048550	65048750	-	1	NA	NA	NA	2513	NM_007777	12968	Mm.258170	NM_007777	ENSMUSG00000070870	Cryge	Cryg-2|Cryg-6|DGcry-2|Elo	crystallin, gamma E	protein-coding	0.030000	0.487562	
mm_156515.1	chrX	150565134	150565334	+	1	NA	NA	NA	-17789	NR_106147	102465782		NR_106147	ENSMUSG00000099172	Mir3620	Gm27984|mmu-mir-3620	microRNA 3620	ncRNA	0.020000	0.557214	
mm_121562.1	chr14	122484339	122484539	+	1	NA	NA	NA	9055	NM_009574	22772	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0.030000	0.567164	
mm_20492.1	chr2	130279266	130279466	-	1	NA	NA	NA	1340	NR_028528	100217428		NR_028528	ENSMUSG00000065272	Snord57	MBII-434	small nucleolar RNA, C/D box 57	snoRNA	0.005000	0.383085	
mm_149229.1	chr19	10177300	10177500	+	1	NA	NA	NA	-5488	NM_146094	76267	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0.010000	0.412935	
mm_136736.1	chr17	8340303	8340503	+	1	NA	NA	NA	-3	NR_028280	320111	Mm.442510	NM_178774	ENSMUSG00000055945	Prr18	9630019K15Rik	proline rich 18	protein-coding	0.030000	0.552239	-75(GCGCCTAAAAGC,-,0.00)
mm_61772.1	chr7	83584826	83585026	+	1	NA	NA	NA	-5	NM_177695	233424	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.010000	0.527363	
mm_1978.1	chr1	86528768	86528968	+	1	NA	NA	NA	2132	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.035000	0.552239	
mm_161727.1	chr17	28953121	28953321	+	1	NA	NA	NA	5	NM_025888	66989	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	0.030000	0.432836	
mm_147079.1	chr18	35619544	35619744	-	1	NA	NA	NA	7583	NM_011397	20522	Mm.22702	NM_011397	ENSMUSG00000024354	Slc23a1	D18Ucla2|SVCT1|Slc23a2|YSPL3	solute carrier family 23 (nucleobase transporters), member 1	protein-coding	0.015000	0.517413	
mm_160685.1	chr10	20323017	20323217	+	1	NA	NA	NA	10648	NM_001025393	72567	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0.040000	0.482587	
mm_45690.1	chr5	77407943	77408143	-	1	NA	NA	NA	2	NM_001159518	29817	Mm.233470	NM_008048	ENSMUSG00000036256	Igfbp7	AGM|Fstl2|Mac25	insulin-like growth factor binding protein 7	protein-coding	0.105000	0.746269	-35(CGGCTTTAAGGG,-,0.00)
mm_167967.1	chrX	152016323	152016523	+	1	NA	NA	NA	-5	NM_019710	24061	Mm.482095	NM_019710	ENSMUSG00000041133	Smc1a	5830426I24Rik|SMC-1A|Sb1.8|Smc1|Smc1alpha|Smc1l1|Smcb|mKIAA0178	structural maintenance of chromosomes 1A	protein-coding	0.095000	0.572139	
mm_134803.1	chr16	24382289	24382489	-	1	NA	NA	NA	-10961	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.005000	0.402985	
mm_71827.1	chr8	68896587	68896787	+	1	NA	NA	NA	16132	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.025000	0.507463	
mm_158261.1	chrX	109013280	109013480	-	1	NA	NA	NA	0	NM_016710	50887	Mm.298443	NM_016710	ENSMUSG00000031245	Hmgn5	GARP45|NBP-45|Nsbp1	high-mobility group nucleosome binding domain 5	protein-coding	0.070000	0.502488	
mm_111711.1	chr12	103695486	103695686	-	1	NA	NA	NA	-57	NM_026687	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding	0.030000	0.527363	
mm_47359.1	chr5	122821175	122821375	-	1	NA	NA	NA	67	NM_021505	59008	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	0.080000	0.661692	
mm_44050.1	chr5	147873152	147873352	+	1	NA	NA	NA	12624	NM_025624	66537	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.035000	0.542289	
mm_62957.1	chr7	119720321	119720521	+	1	NA	NA	NA	377	NM_145585	233802	Mm.26392	NM_145585	ENSMUSG00000030942	Thumpd1	6330575P11Rik	THUMP domain containing 1	protein-coding	0.065000	0.616915	-87(GCCTAAAGAGCC,+,0.00)
mm_102604.1	chr11	62395107	62395307	-	1	NA	NA	NA	43308	NM_001252313	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.000000	0.318408	
mm_65054.1	chr7	18711121	18711321	-	1	NA	NA	NA	-6869	NM_001004152	243862	Mm.389833	NM_001004152	ENSMUSG00000044903	Psg22	AA408604|cea9	pregnancy-specific glycoprotein 22	protein-coding	0.000000	0.427861	
mm_69339.1	chr7	129648919	129649119	-	1	NA	NA	NA	57156	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.020000	0.537313	
mm_113261.1	chr13	28839294	28839494	+	1	NA	NA	NA	46028	NR_045054	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.005000	0.447761	
mm_98037.1	chr11	85339629	85339829	+	1	NA	NA	NA	-13435	NM_001166642	192197	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.005000	0.467662	
mm_53771.1	chr6	145934049	145934249	+	1	NA	NA	NA	2	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.045000	0.686567	
mm_166504.1	chr6	4747336	4747536	+	1	NA	NA	NA	130	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.100000	0.631841	
mm_169435.1	chr14	5501575	5501775	+	1	NA	NA	NA	-14604	NM_001256885	100041735	Mm.464176	NM_001256885	ENSMUSG00000095295	Gm3488	100041747|Gm3494	predicted gene, 3488	protein-coding	0.120000	0.761194	
mm_79585.1	chr9	58253199	58253399	+	1	NA	NA	NA	135	NM_026942	69106	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.065000	0.651741	
mm_149885.1	chr19	25383359	25383559	+	1	NA	NA	NA	-122247	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.020000	0.557214	
mm_105589.1	chr11	106725167	106725367	-	1	NA	NA	NA	-9986	NM_001305157	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.030000	0.502488	24(TTCTTTAAAAGG,-,0.00),25(TCTTTAAAAGGT,+,0.00)
mm_67393.1	chr7	79848082	79848282	-	1	NA	NA	NA	-5830	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.085000	0.701493	
mm_20753.1	chr2	140592275	140592475	-	1	NA	NA	NA	79101	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.010000	0.288557	
mm_45975.1	chr5	90470734	90470934	-	1	NA	NA	NA	9964	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.368159	
mm_89011.1	chr10	81643537	81643737	+	1	NA	NA	NA	-5432	NM_001142963	100233208	Mm.327168	NM_001142963	ENSMUSG00000096856	Gm10778	ENSMUSG00000074860	predicted gene 10778	protein-coding	0.135000	0.711443	
mm_133341.1	chr16	81200657	81200857	+	1	NA	NA	NA	60	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.160000	0.791045	
mm_130582.1	chr15	99534803	99535003	-	1	NA	NA	NA	-6738	NM_001038658	72393	Mm.39760	NM_028224	ENSMUSG00000023011	Faim2	2900002L20Rik|Lfg|Lfg2|NMP25|Nmp35|Tmbim2	Fas apoptotic inhibitory molecule 2	protein-coding	0.025000	0.487562	
mm_114095.1	chr13	54701341	54701541	+	1	NA	NA	NA	-22	NM_001033364	268663	Mm.315382	NM_001033364	ENSMUSG00000034918	Cdhr2	Gm624|PC-LKC|Pcdh24	cadherin-related family member 2	protein-coding	0.020000	0.587065	
mm_56085.1	chr6	87335448	87335648	-	1	NA	NA	NA	227	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.090000	0.631841	
mm_151984.1	chr19	5841783	5841983	-	1	NA	NA	NA	3595	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.005000	0.447761	
mm_39063.1	chr4	154025859	154026059	-	1	NA	NA	NA	85	NM_001163722	68859	Mm.477488	NM_001033144	ENSMUSG00000078350	Smim1	0610011H04Rik|1190007F08Rik|2700009I11Rik	small integral membrane protein 1	protein-coding	0.070000	0.721393	
mm_80931.1	chr9	102626203	102626403	+	1	NA	NA	NA	7	NM_181394	69010	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	0.135000	0.696517	
mm_77599.1	chr8	123892585	123892785	-	1	NA	NA	NA	2090	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.050000	0.601990	
mm_27706.1	chr3	67463786	67463986	-	1	NA	NA	NA	21	NM_016753	17035	Mm.2632	NM_016753	ENSMUSG00000047557	Lxn	-	latexin	protein-coding	0.075000	0.681592	
mm_94904.1	chr11	29198777	29198977	+	1	NA	NA	NA	25970	NM_134034	104570	Mm.276386	NM_134034	ENSMUSG00000020463	Smek2	AW011752|AW557776|Ppp4r3b|mKIAA1387	SMEK homolog 2, suppressor of mek1 (Dictyostelium)	protein-coding	0.015000	0.378109	
mm_23651.1	chr3	67582628	67582828	+	1	NA	NA	NA	-40	NM_025813	66868	Mm.491153	NM_025813	ENSMUSG00000027775	Mfsd1	1200003O06Rik	major facilitator superfamily domain containing 1	protein-coding	0.090000	0.631841	
mm_2036.1	chr1	87213964	87214164	+	1	NA	NA	NA	125	NM_001039169	26987	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0.155000	0.776119	
mm_149793.1	chr19	23141555	23141755	+	1	NA	NA	NA	429	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.155000	0.751244	
mm_38891.1	chr4	149773955	149774155	-	1	NA	NA	NA	212	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.135000	0.721393	
mm_101076.1	chr11	11685540	11685740	-	1	NA	NA	NA	-285	NM_009578	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.190000	0.825871	
mm_4135.1	chr1	170644402	170644602	+	1	NA	NA	NA	-30	NM_177068	320078	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.085000	0.711443	
mm_104149.1	chr11	87074026	87074226	-	1	NA	NA	NA	11	NM_025638	66569	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	0.135000	0.711443	
mm_131609.1	chr16	19236297	19236497	+	1	NA	NA	NA	50344	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.010000	0.437811	
mm_164795.1	chr18	20059272	20059472	-	1	NA	NA	NA	182	NM_013505	13506	Mm.280547	NM_013505	ENSMUSG00000024331	Dsc2	AW228162	desmocollin 2	protein-coding	0.070000	0.582090	
mm_20669.1	chr2	132146154	132146354	-	1	NA	NA	NA	-1146	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.010000	0.393035	
mm_33920.1	chr4	136540856	136541056	+	1	NA	NA	NA	61767	NM_133872	99982	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	0.005000	0.378109	
mm_100435.1	chr11	119475952	119476152	+	1	NA	NA	NA	-15295	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.005000	0.402985	
mm_97204.1	chr11	75598801	75599001	+	1	NA	NA	NA	1330	NR_110477	654359	Mm.439961	NR_110477		Gm12338	OTTMUSG00000006216	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.010000	0.442786	
mm_65953.1	chr7	30426092	30426292	-	1	NA	NA	NA	2888	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.020000	0.577114	
mm_102253.1	chr11	55151599	55151799	-	1	NA	NA	NA	7	NM_172258	215332	Mm.87054	NM_172258	ENSMUSG00000049491	Slc36a3	PAT3|TRAMD2|tramdorin2	solute carrier family 36 (proton/amino acid symporter), member 3	protein-coding	0.010000	0.542289	
mm_54778.1	chr6	41541665	41541865	-	1	NA	NA	NA	19989	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.452736	
mm_170453.1	chr18	85382466	85382666	-	1	NA	NA	NA	-431042	NM_025969	67105	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	tranlocase of inner mitochondrial membrane 21	protein-coding	0.055000	0.537313	-31(CTCCTTAAGAGG,-,0.00)
mm_37172.1	chr4	117182530	117182730	-	1	NA	NA	NA	-6	NM_134471	73804	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.085000	0.577114	
mm_48373.1	chr5	139484300	139484500	-	1	NA	NA	NA	91	NM_133349	100494	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.080000	0.606965	
mm_23363.1	chr3	55242559	55242759	+	1	NA	NA	NA	133	NM_001195538	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.095000	0.691542	
mm_64010.1	chr7	140207175	140207375	+	1	NA	NA	NA	-4507	NM_001011814	258055	Mm.377339	NM_001011814	ENSMUSG00000050366	Olfr524	MOR103-14P	olfactory receptor 524	protein-coding	0.010000	0.497512	
mm_98682.1	chr11	96286685	96286885	+	1	NA	NA	NA	139	NM_010460	15415	Mm.390366	NM_010460	ENSMUSG00000038721	Hoxb7	AI325018|Hox-2.3	homeobox B7	protein-coding	0.075000	0.522388	
mm_67693.1	chr7	89517778	89517978	-	1	NA	NA	NA	-292	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.060000	0.606965	
mm_111350.1	chr12	86949476	86949676	-	1	NA	NA	NA	2233	NM_001289432	217732	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.040000	0.507463	
mm_18303.1	chr2	53146048	53146248	-	1	NA	NA	NA	45039	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.030000	0.487562	
mm_33879.1	chr4	136172335	136172535	+	1	NA	NA	NA	161	NM_177733	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.085000	0.557214	
mm_73910.1	chr8	119575258	119575458	+	1	NA	NA	NA	123	NM_026648	68270	Mm.41977	NM_026648	ENSMUSG00000031831	Dnaaf1	4930457P18Rik|Lrrc50	dynein, axonemal assembly factor 1	protein-coding	0.120000	0.686567	
mm_50445.1	chr6	48874738	48874938	+	1	NA	NA	NA	-20417	NM_029638	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.015000	0.552239	
mm_71668.1	chr8	60673263	60673463	+	1	NA	NA	NA	17806	NM_001177882	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	0.005000	0.398010	55(CACTTTTAATGC,-,0.00)
mm_172836.1	chr9	26406684	26406884	-	1	NA	NA	NA	-327024	NM_001310766	76898	Mm.218788	NM_029792	ENSMUSG00000045994	B3gat1	0710007K08Rik|AI846286|GlcAT-P|Glcatp|Hnk1	beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)	protein-coding	0.065000	0.671642	
mm_126419.1	chr15	80320092	80320292	+	1	NA	NA	NA	32954	NM_001044308	239556	Mm.291058	NM_001044308	ENSMUSG00000022416	Cacna1i	Ca(V)3.3	calcium channel, voltage-dependent, alpha 1I subunit	protein-coding	0.015000	0.606965	
mm_108087.1	chr12	74208260	74208460	+	1	NA	NA	NA	-75916	NR_030734	74284	Mm.287421	NR_030733	ENSMUSG00000071265	1700086L19Rik	1700006L05Rik|AU016007	RIKEN cDNA 1700086L19 gene	ncRNA	0.010000	0.442786	
mm_96057.1	chr11	59566252	59566452	+	1	NA	NA	NA	5386	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.030000	0.557214	
mm_159016.1	chr1	171150610	171150810	+	1	NA	NA	NA	-3	NM_008623	17528	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0.040000	0.497512	
mm_80547.1	chr9	82829726	82829926	+	1	NA	NA	NA	20	NM_022986	65099	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	0.060000	0.626866	
mm_65771.1	chr7	28761694	28761894	-	1	NA	NA	NA	4850	NM_001306222	18036	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	0.040000	0.626866	
mm_126328.1	chr15	79891599	79891799	+	1	NA	NA	NA	-709	NM_001160415	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.040000	0.537313	
mm_31803.1	chr4	65123658	65123858	+	1	NA	NA	NA	-416	NM_021362	18491	Mm.317854	NM_021362	ENSMUSG00000028370	Pappa	8430414N03Rik|IGFBP-4ase|PAG1|PAPP-A	pregnancy-associated plasma protein A	protein-coding	0.035000	0.398010	
mm_30836.1	chr4	22357481	22357681	+	1	NA	NA	NA	38	NR_104380	269514	Mm.40708	NM_172988	ENSMUSG00000040410	Fbxl4	AI836810|FBL4|FBL5	F-box and leucine-rich repeat protein 4	protein-coding	0.130000	0.786070	
mm_31129.1	chr4	43058937	43059137	+	1	NA	NA	NA	84	NM_001310758	22249	Mm.128892	NM_021468	ENSMUSG00000028456	Unc13b	Munc13-1|Munc13-2|Unc13a|Unc13h1|Unc13h2	unc-13 homolog B (C. elegans)	protein-coding	0.115000	0.711443	
mm_31617.1	chr4	59035397	59035597	+	1	NA	NA	NA	341	NM_025277	14700	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	0.115000	0.721393	
mm_113996.1	chr13	52583242	52583442	+	1	NA	NA	NA	-95	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.115000	0.731343	
mm_144080.1	chr17	91092924	91093124	-	1	NA	NA	NA	-222	NM_020252	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.015000	0.572139	
mm_28048.1	chr3	84040160	84040360	-	1	NA	NA	NA	-99	NM_172681	229473	Mm.28838	NM_172681	ENSMUSG00000033767	D930015E06Rik	Kiaa0922|mKIAA0922	RIKEN cDNA D930015E06 gene	protein-coding	0.150000	0.786070	
mm_25215.1	chr3	103846761	103846961	+	1	NA	NA	NA	-12934	NR_104070	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.025000	0.447761	
mm_148484.1	chr19	4148541	4148741	+	1	NA	NA	NA	-22	NM_011778	23789	Mm.276859	NM_011778	ENSMUSG00000024835	Coro1b	-	coronin, actin binding protein 1B	protein-coding	0.110000	0.721393	
mm_118536.1	chr14	16249213	16249413	+	1	NA	NA	NA	-1	NM_021504	59007	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	0.140000	0.791045	
mm_129377.1	chr15	78172337	78172537	-	1	NA	NA	NA	1671	NM_025931	67042	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	0.005000	0.462687	
mm_147996.1	chr18	67675776	67675976	-	1	NA	NA	NA	34277	NM_134138	107047	Mm.150701	NM_134138	ENSMUSG00000024537	Psmg2	1700017I17Rik|AW545363|Clast3|Tnfsf5ip1	proteasome (prosome, macropain) assembly chaperone 2	protein-coding	0.005000	0.318408	
mm_146048.1	chr18	69593423	69593623	+	1	NA	NA	NA	247802	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.045000	0.477612	
mm_171213.1	chr3	5860685	5860885	+	1	NA	NA	NA	-284537	NM_001163305	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.095000	0.611940	
mm_82714.1	chr9	24542014	24542214	-	1	NA	NA	NA	-38974	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.010000	0.398010	
mm_125260.1	chr15	35371062	35371262	+	1	NA	NA	NA	-384	NM_177151	666173	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0.050000	0.542289	
mm_32227.1	chr4	102087555	102087755	+	1	NA	NA	NA	100815	NM_001085520	381536	Mm.297685	NM_001085520	ENSMUSG00000078625	Gm12789	OTTMUSG00000008445	predicted gene 12789	protein-coding	0.100000	0.691542	
mm_28254.1	chr3	88552749	88552949	-	1	NA	NA	NA	78	NM_031248	83409	Mm.41680	NM_031248	ENSMUSG00000028062	Lamtor2	2010111E04Rik|AL022628|Mapbpip|P14|Rab25|Robld3	late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	protein-coding	0.050000	0.616915	
mm_171274.1	chr3	88775150	88775350	+	1	NA	NA	NA	-1807	NR_028359	100302730	Mm.482358	NR_028359		5830417I10Rik	3632445O20Rik|AA387005	gon-4-like pseudogene	pseudo	0.105000	0.671642	
mm_166600.1	chr6	67532472	67532672	-	1	NA	NA	NA	3250	NM_020047	56753	Mm.439913	NM_020047	ENSMUSG00000051397	Tacstd2	C80403|EGP-1|GA733-1|Ly97|TROP2	tumor-associated calcium signal transducer 2	protein-coding	0.005000	0.482587	
mm_29222.1	chr3	107212708	107212908	-	1	NA	NA	NA	8924	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.477612	
mm_61470.1	chr7	75612120	75612320	+	1	NA	NA	NA	156686	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.025000	0.542289	
mm_120544.1	chr14	67297893	67298093	+	1	NA	NA	NA	16718	NM_001037931	628416	Mm.390723	NM_001037931		Gm6878	EG628416	predicted gene 6878	protein-coding	0.005000	0.293532	45(TGCCTTTAAAGG,-,0.00),46(GCCTTTAAAGGT,+,0.00),46(GCCTTTAAAGGT,-,0.00),47(CCTTTAAAGGTT,+,0.00),70(CCCTTTAAAAAA,-,0.00)
mm_93103.1	chr10	91001276	91001476	-	1	NA	NA	NA	81367	NM_001042558	11783	Mm.220289	NM_009684	ENSMUSG00000019979	Apaf1	6230400I06Rik|Apaf-1|Apaf1l|fog|mKIAA0413	apoptotic peptidase activating factor 1	protein-coding	0.005000	0.303483	
mm_129448.1	chr15	78561108	78561308	-	1	NA	NA	NA	11575	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.015000	0.557214	
mm_40762.1	chr5	66969021	66969221	+	1	NA	NA	NA	705	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.060000	0.512438	
mm_8020.1	chr1	134984922	134985122	-	1	NA	NA	NA	22457	NM_001278115	67196	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	0.005000	0.417910	
mm_79211.1	chr9	49037182	49037382	+	1	NA	NA	NA	-18299	NM_012039	26951	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	0.010000	0.447761	
mm_148688.1	chr19	5724780	5724980	+	1	NA	NA	NA	1437	NM_001114595	114601	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0.020000	0.572139	
mm_7022.1	chr1	86909605	86909805	-	1	NA	NA	NA	180223	NM_007433	11650	Mm.195224	NM_007433	ENSMUSG00000026246	Alppl2	Akp5|C77216|D1Ertd816e|EAP	alkaline phosphatase, placental-like 2	protein-coding	0.025000	0.502488	-81(TCTTAAATAGTC,+,0.00)
mm_70113.1	chr7	142678606	142678806	-	1	NA	NA	NA	1020	NM_001185083	16334	Mm.4946	NM_008387	ENSMUSG00000000215	Ins2	AA986540|Ins-2|InsII|Mody|Mody4	insulin II	protein-coding	0.005000	0.527363	
mm_52815.1	chr6	121343868	121344068	+	1	NA	NA	NA	892	NM_001347433	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.015000	0.547264	
mm_24417.1	chr3	90526677	90526877	+	1	NA	NA	NA	-72	NM_025393	66166	Mm.24006	NM_025393	ENSMUSG00000042306	S100a14	1110013O05Rik|S100a15|S114	S100 calcium binding protein A14	protein-coding	0.010000	0.631841	
mm_55164.1	chr6	51873603	51873803	-	1	NA	NA	NA	138846	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.000000	0.268657	
mm_13053.1	chr2	91102180	91102380	+	1	NA	NA	NA	5602	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.025000	0.502488	
mm_72092.1	chr8	71580421	71580621	+	1	NA	NA	NA	11594	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.020000	0.552239	
mm_91362.1	chr10	28986197	28986397	-	1	NA	NA	NA	9	NM_026336	67719	Mm.440480	NM_026336	ENSMUSG00000015519	2310057J18Rik	2210414P04Rik|Leg1	RIKEN cDNA 2310057J18 gene	protein-coding	0.010000	0.492537	
mm_141196.1	chr17	27021149	27021349	-	1	NA	NA	NA	3214	NM_001251881	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.045000	0.582090	-99(GCCTATTTAAGA,-,0.00)
mm_46480.1	chr5	105131804	105132004	-	1	NA	NA	NA	7648	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.422886	
mm_111115.1	chr12	80960559	80960759	-	1	NA	NA	NA	7420	NM_011387	20493	Mm.486361	NM_011387	ENSMUSG00000021135	Slc10a1	Ntcp	solute carrier family 10 (sodium/bile acid cotransporter family), member 1	protein-coding	0.010000	0.452736	
mm_107867.1	chr12	69907736	69907936	+	1	NA	NA	NA	-14673	NM_201519	399510	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	0.045000	0.582090	
mm_21261.1	chr2	156720699	156720899	-	1	NA	NA	NA	110	NR_040505	74846	Mm.443946	NR_040505	ENSMUSG00000086638	4930405A21Rik	-	RIKEN cDNA 4930405A21 gene	ncRNA	0.120000	0.701493	-82(GTCTTGAAAGGG,-,0.00)
mm_30628.1	chr4	8752241	8752441	+	1	NA	NA	NA	61935	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.025000	0.537313	
mm_80186.1	chr9	72357676	72357876	+	1	NA	NA	NA	-80753	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.000000	0.412935	
mm_78470.1	chr9	32636151	32636351	+	1	NA	NA	NA	-59791	NM_011808	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.030000	0.512438	
mm_101902.1	chr11	49187041	49187241	-	1	NA	NA	NA	-52	NM_172793	237754	Mm.130787	NM_172793	ENSMUSG00000040283	Btnl9	B430208I01|Btn3|D330012D11Rik	butyrophilin-like 9	protein-coding	0.010000	0.457711	86(CCCCTTTAGAGG,-,0.00),87(CCCTTTAGAGGG,+,0.00)
mm_12677.1	chr2	75832081	75832281	+	1	NA	NA	NA	4	NM_172666	228061	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.140000	0.766169	
mm_62588.1	chr7	105640389	105640589	+	1	NA	NA	NA	-51	NM_019502	14356	Mm.220330	NM_019502	ENSMUSG00000089847	Timm10b	Fxc1|Tim10b|Tim9b	translocase of inner mitochondrial membrane 10B	protein-coding	0.065000	0.646766	
mm_92508.1	chr10	78412757	78412957	-	1	NA	NA	NA	186	NM_010925	18114	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	0.135000	0.716418	
mm_146791.1	chr18	20114760	20114960	-	1	NA	NA	NA	-87	NM_013504	13505	Mm.33740	NM_013504	ENSMUSG00000044322	Dsc1	1110020A10Rik|AI507491	desmocollin 1	protein-coding	0.000000	0.537313	
mm_109908.1	chr12	8351292	8351492	-	1	NA	NA	NA	37959	NM_021429	58240	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.010000	0.517413	
mm_118714.1	chr14	22186465	22186665	+	1	NA	NA	NA	166853	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.010000	0.407960	
mm_103240.1	chr11	70687849	70688049	-	1	NA	NA	NA	156	NM_001190376	216874	Mm.473726	NM_178116	ENSMUSG00000040712	Camta2	Kiaa0909-hp|mKIAA0909	calmodulin binding transcription activator 2	protein-coding	0.100000	0.711443	
mm_91396.1	chr10	30771803	30772003	-	1	NA	NA	NA	31204	NM_172495	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.010000	0.343284	
mm_6816.1	chr1	84181422	84181622	-	1	NA	NA	NA	37439	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.358209	
mm_161383.1	chr14	74640875	74641075	+	1	NA	NA	NA	135	NM_172812	15558	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	0.030000	0.562189	
mm_99804.1	chr11	107993916	107994116	+	1	NA	NA	NA	-2832	NR_106082	102465705		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0.000000	0.567164	
mm_2361.1	chr1	92973107	92973307	+	1	NA	NA	NA	88	NM_001104529	64095	Mm.152780	NM_022320	ENSMUSG00000026271	Gpr35	KPG_007	G protein-coupled receptor 35	protein-coding	0.005000	0.567164	
mm_75562.1	chr8	58911740	58911940	-	1	NA	NA	NA	85	NM_173411	234290	Mm.39244	NM_173411	ENSMUSG00000049946	BC030500	-	cDNA sequence BC030500	protein-coding	0.040000	0.442786	
mm_150573.1	chr19	40119704	40119904	+	1	NA	NA	NA	30125	NM_001167875	107141	Mm.474575	NM_134144	ENSMUSG00000054827	Cyp2c50	AI266900	cytochrome P450, family 2, subfamily c, polypeptide 50	protein-coding	0.045000	0.452736	
mm_147361.1	chr18	43393061	43393261	-	1	NA	NA	NA	216	NM_009468	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.110000	0.731343	
mm_18120.1	chr2	44997038	44997238	-	1	NA	NA	NA	26039	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.015000	0.437811	
mm_46665.1	chr5	108693939	108694139	-	1	NA	NA	NA	-190	NM_001164259	116701	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0.110000	0.706468	
mm_56965.1	chr6	120038573	120038773	-	1	NA	NA	NA	-18	NM_001185021	232341	Mm.333349	NM_198703	ENSMUSG00000045962	Wnk1	6430573H23Rik|EG406236|Hsn2|Prkwnk1|mKIAA0344	WNK lysine deficient protein kinase 1	protein-coding	0.130000	0.696517	10(CGCCATTTAAAG,-,0.00),12(CCATTTAAAGCG,+,0.00)
mm_77639.1	chr8	124369809	124370009	-	1	NA	NA	NA	64027	NM_171824	209966	Mm.234233	NM_171824	ENSMUSG00000050751	Pgbd5	2900019M05Rik|AI854313	piggyBac transposable element derived 5	protein-coding	0.005000	0.462687	
mm_79403.1	chr9	54981389	54981589	+	1	NA	NA	NA	609	NM_176844	110835	Mm.103778	NM_176844	ENSMUSG00000035594	Chrna5	Acra-5|Acra5	cholinergic receptor, nicotinic, alpha polypeptide 5	protein-coding	0.125000	0.701493	
mm_111428.1	chr12	91696282	91696482	-	1	NA	NA	NA	90054	NM_175367	108800	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.010000	0.577114	
mm_108711.1	chr12	87026477	87026677	+	1	NA	NA	NA	13	NM_172583	217733	Mm.110032	NM_172583	ENSMUSG00000034145	Tmem63c	4932420N09|9330187M14Rik	transmembrane protein 63c	protein-coding	0.045000	0.616915	
mm_140371.1	chr17	86963305	86963505	+	1	NA	NA	NA	294	NM_145491	104215	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.145000	0.820896	
mm_99015.1	chr11	98863670	98863870	+	1	NA	NA	NA	172	NM_197940	68524	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0.075000	0.611940	
mm_142358.1	chr17	43667051	43667251	-	1	NA	NA	NA	-136	NM_028711	74011	Mm.288697	NM_028711	ENSMUSG00000023912	Slc25a27	3632410G24Rik|9430092A03Rik|D530043E16Rik|Ucp4	solute carrier family 25, member 27	protein-coding	0.065000	0.621891	69(GGGCTGAAAAGG,-,0.00)
mm_33503.1	chr4	130884840	130885040	+	1	NA	NA	NA	-28394	NM_010686	16792	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3	lysosomal-associated protein transmembrane 5	protein-coding	0.050000	0.537313	
mm_158001.1	chrX	94998913	94999113	-	1	NA	NA	NA	27669	NM_178753	270624	Mm.115205	NM_178753	ENSMUSG00000071722	Spin4	9630042H07Rik	spindlin family, member 4	protein-coding	0.035000	0.537313	
mm_92711.1	chr10	80757090	80757290	-	1	NA	NA	NA	1984	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.010000	0.502488	
mm_32095.1	chr4	98546603	98546803	+	1	NA	NA	NA	69	NM_001005787	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.015000	0.567164	
mm_161431.1	chr15	55576720	55576920	+	1	NA	NA	NA	19412	NM_001168250	105837	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0.010000	0.427861	
mm_162766.1	chr10	63987964	63988164	+	1	NA	NA	NA	102191	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.005000	0.398010	
mm_21341.1	chr2	157107466	157107666	-	1	NA	NA	NA	20511	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.015000	0.383085	
mm_171718.1	chr4	8461829	8462029	-	1	NA	NA	NA	-73715	NM_021518	59021	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0.020000	0.547264	-36(CCTTTTATAAGC,+,0.00),-36(CCTTTTATAAGC,-,0.00)
mm_168571.1	chr11	70652765	70652965	+	1	NA	NA	NA	1785	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.030000	0.512438	
mm_162862.1	chr10	93124193	93124393	-	1	NA	NA	NA	-36583	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.020000	0.472637	78(GCTTTTAAACAA,+,0.00)
mm_62222.1	chr7	98489934	98490134	+	1	NA	NA	NA	-4188	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.155000	0.781095	-73(CTATTTAAAAGG,-,0.00)
mm_106599.1	chr11	120730948	120731148	-	1	NA	NA	NA	973	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.020000	0.597015	
mm_104888.1	chr11	99566330	99566530	-	1	NA	NA	NA	200	NM_023511	69473	Mm.158281	NM_023511	ENSMUSG00000047564	Krtap3-1	2310003K17Rik|KAP3.1|KRTAP3.1	keratin associated protein 3-1	protein-coding	0.015000	0.626866	
mm_60958.1	chr7	47271727	47271927	+	1	NA	NA	NA	-18979	NM_001288801	668725	Mm.436563	NM_001177566	ENSMUSG00000074111	Mrgpra9	EG668725|MrgA9	MAS-related GPR, member A9	protein-coding	0.020000	0.452736	
mm_102009.1	chr11	51605397	51605597	-	1	NA	NA	NA	1384	NM_001048061	15384	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.005000	0.388060	
mm_99075.1	chr11	99387239	99387439	+	1	NA	NA	NA	2025	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.020000	0.457711	
mm_47048.1	chr5	116083106	116083306	-	1	NA	NA	NA	40	NM_001101546	545798	Mm.483995	NM_001101546	ENSMUSG00000079278	Tmem233	DSPB2|Gm13843|OTTMUSG00000014722	transmembrane protein 233	protein-coding	0.055000	0.616915	
mm_124186.1	chr14	95558031	95558231	-	1	NA	NA	NA	-323135	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	0.020000	0.452736	
mm_141135.1	chr17	26206393	26206593	-	1	NA	NA	NA	3531	NM_001081069	50782	Mm.109840	NM_001081069	ENSMUSG00000024186	Rgs11	C78048	regulator of G-protein signaling 11	protein-coding	0.000000	0.517413	
mm_110445.1	chr12	51030080	51030280	-	1	NA	NA	NA	25024	NR_126468	75494	Mm.416848	NR_126468		1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA	0.010000	0.412935	
mm_14346.1	chr2	129593298	129593498	+	1	NA	NA	NA	229	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.105000	0.736318	
mm_31650.1	chr4	59673908	59674108	+	1	NA	NA	NA	47797	NM_153158	230259	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	0.000000	0.487562	
mm_54334.1	chr6	30641764	30641964	-	1	NA	NA	NA	2646	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.020000	0.522388	
mm_88766.1	chr10	80335132	80335332	+	1	NA	NA	NA	5087	NM_139292	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.025000	0.552239	
mm_117190.1	chr13	63564651	63564851	-	1	NA	NA	NA	984	NM_008957	19206	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes	patched 1	protein-coding	0.055000	0.567164	
mm_78197.1	chr9	21367921	21368121	+	1	NA	NA	NA	150	NM_001042709	16201	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.085000	0.616915	
mm_62701.1	chr7	110221654	110221854	+	1	NA	NA	NA	51	NM_009302	20947	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.080000	0.681592	
mm_146714.1	chr18	14729253	14729453	-	1	NA	NA	NA	23202	NM_001163609	73677	Mm.87277	NM_001163609	ENSMUSG00000036743	Psma8	2410072D24Rik	proteasome (prosome, macropain) subunit, alpha type, 8	protein-coding	0.000000	0.412935	
mm_85005.1	chr9	86880553	86880753	-	1	NA	NA	NA	-204	NM_001277983	20616	Mm.281651	NM_013669	ENSMUSG00000033419	Snap91	91kDa|AP180|F1-20|mKIAA0656	synaptosomal-associated protein 91	protein-coding	0.160000	0.776119	
mm_14959.1	chr2	152080849	152081049	+	1	NA	NA	NA	-580	NM_001160410	545474	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.060000	0.567164	
mm_170653.1	chr2	10365137	10365337	-	1	NA	NA	NA	-5214	NM_001198808	353282	Mm.329991	NM_177386	ENSMUSG00000061186	Sfmbt2	D2Wsu23e|D330030P06Rik	Scm-like with four mbt domains 2	protein-coding	0.010000	0.492537	
mm_71377.1	chr8	45827245	45827445	+	1	NA	NA	NA	-8048	NR_045739	319940	Mm.441720	NR_045739	ENSMUSG00000085440	Sorbs2os	D330022K07Rik	sorbin and SH3 domain containing 2, opposite strand	ncRNA	0.000000	0.308458	
mm_94413.1	chr11	5861774	5861974	+	1	NA	NA	NA	8	NM_001291857	11568	Mm.3317	NM_009636	ENSMUSG00000020473	Aebp1	ACLP	AE binding protein 1	protein-coding	0.105000	0.746269	
mm_88271.1	chr10	74967084	74967284	+	1	NA	NA	NA	-47	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	0.170000	0.805970	
mm_163500.1	chr12	112369010	112369210	-	1	NA	NA	NA	54088	NR_036459	100504733	Mm.255309	NM_176956		A730018C14Rik	-	RIKEN cDNA A730018C14 gene	ncRNA	0.010000	0.572139	
mm_14092.1	chr2	125161208	125161408	+	1	NA	NA	NA	8708	NM_001079690	20495	Mm.3914	NM_011389	ENSMUSG00000027202	Slc12a1	AI788571|D630042G03Rik|Nkcc2|mBSC1|urehr3	solute carrier family 12, member 1	protein-coding	0.015000	0.398010	
mm_7979.1	chr1	134099042	134099242	-	1	NA	NA	NA	-12100	NM_001284524	71884	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.015000	0.557214	
mm_41100.1	chr5	87694754	87694954	+	1	NA	NA	NA	4571	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.010000	0.512438	
mm_12467.1	chr2	71389331	71389531	+	1	NA	NA	NA	171	NM_026115	107435	Mm.272472	NM_026115	ENSMUSG00000027018	Hat1	2410071B14Rik|AA536933|Hat-1|KAT1	histone aminotransferase 1	protein-coding	0.105000	0.726368	
mm_133186.1	chr16	72663066	72663266	+	1	NA	NA	NA	17	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.075000	0.651741	-79(CCCCTTTAAAGG,-,0.00),-78(CCCTTTAAAGGT,+,0.00),-78(CCCTTTAAAGGT,-,0.00),-77(CCTTTAAAGGTT,+,0.00)
mm_2247.1	chr1	91056585	91056785	+	1	NA	NA	NA	3241	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.015000	0.522388	
mm_9098.1	chr1	169531354	169531554	-	1	NA	NA	NA	10	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0.100000	0.592040	
mm_158184.1	chrX	104201046	104201246	-	1	NA	NA	NA	-29	NM_001077354	245555	Mm.381907	NM_001077354	ENSMUSG00000046449	C77370	A230051P11|C77386|KIDLIA|Kiaa2022|Xpn|mKIAA2022	expressed sequence C77370	protein-coding	0.080000	0.676617	
mm_31903.1	chr4	84104727	84104927	+	1	NA	NA	NA	-59948	NR_130998	78238	Mm.243903	NR_130998	ENSMUSG00000085217	6030471H07Rik	-	RIKEN cDNA 6030471H07 gene	ncRNA	0.015000	0.512438	
mm_53241.1	chr6	127474044	127474244	+	1	NA	NA	NA	20421	NM_181402	101187	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.010000	0.472637	
mm_108654.1	chr12	86361337	86361537	+	1	NA	NA	NA	320	NM_001159500	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.030000	0.527363	
mm_40162.1	chr5	35591982	35592182	+	1	NA	NA	NA	-3319	NR_045807	74364	Mm.473123	NM_175208	ENSMUSG00000055061	4931431C16Rik	-	RIKEN cDNA 4931431C16 gene	ncRNA	0.030000	0.557214	
mm_122940.1	chr14	54965251	54965451	-	1	NA	NA	NA	1256	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.060000	0.587065	
mm_38308.1	chr4	136898745	136898945	-	1	NA	NA	NA	-1	NM_007572	12259	Mm.439957	NM_007572	ENSMUSG00000036887	C1qa	AI255395|C1q	complement component 1, q subcomponent, alpha polypeptide	protein-coding	0.040000	0.557214	
mm_34507.1	chr4	148804262	148804462	+	1	NA	NA	NA	-30	NM_001159344	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.120000	0.671642	
mm_34571.1	chr4	150049082	150049282	+	1	NA	NA	NA	-19272	NR_029751	723848		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0.050000	0.661692	
mm_13661.1	chr2	114055226	114055426	+	1	NA	NA	NA	930	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.025000	0.457711	
mm_8452.1	chr1	152903003	152903203	-	1	NA	NA	NA	-457	NM_001005507	226517	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.085000	0.636816	
mm_143859.1	chr17	84185954	84186154	-	1	NA	NA	NA	1893	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.140000	0.756219	
mm_111202.1	chr12	84226094	84226294	-	1	NA	NA	NA	-7313	NM_001163501	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.020000	0.477612	
mm_127766.1	chr15	103563310	103563510	+	1	NA	NA	NA	1671	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.000000	0.482587	
mm_76277.1	chr8	84183791	84183991	-	1	NA	NA	NA	-4930	NR_029821	723819		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	0.180000	0.815920	
mm_75640.1	chr8	64849852	64850052	-	1	NA	NA	NA	-28	NM_178633	77113	Mm.350347	NM_178633	ENSMUSG00000031605	Klhl2	6030411N21Rik|ABP-KELCH|AU020744|Mav	kelch-like 2, Mayven	protein-coding	0.200000	0.845771	
mm_105096.1	chr11	100939241	100939441	-	1	NA	NA	NA	199	NM_213660	20848	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.110000	0.721393	
mm_134780.1	chr16	23981140	23981340	-	1	NA	NA	NA	7372	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.040000	0.502488	
mm_98560.1	chr11	95336919	95337119	+	1	NA	NA	NA	1	NM_172543	215512	Mm.262113	NM_172543	ENSMUSG00000038893	Fam117a	5730593F17Rik|AW548096	family with sequence similarity 117, member A	protein-coding	0.100000	0.751244	
mm_19059.1	chr2	77313875	77314075	-	1	NA	NA	NA	-33383	NM_175465	228071	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.020000	0.512438	
mm_38900.1	chr4	149909473	149909673	-	1	NA	NA	NA	45433	NM_029035	74646	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	0.055000	0.582090	
mm_57409.1	chr6	124865673	124865873	-	1	NA	NA	NA	-1856	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.010000	0.552239	
mm_168890.1	chr1	24615462	24615662	-	1	NA	NA	NA	-28125	NM_007733	12823	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.005000	0.293532	-9(TCTTATATGGCC,+,0.00)
mm_170569.1	chr19	51142411	51142611	-	1	NA	NA	NA	-463865	NM_001290356	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.065000	0.537313	41(GCCCAGAAAAGG,-,0.00)
mm_120160.1	chr14	60709427	60709627	+	1	NA	NA	NA	-23377	NM_001310594	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.040000	0.616915	
mm_138857.1	chr17	42380766	42380966	+	1	NA	NA	NA	64919	NM_028474	627626	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	0.000000	0.308458	-54(TCCTTTTTAAAG,-,0.00),-53(CCTTTTTAAAGG,-,0.00),-52(CTTTTTAAAGGC,+,0.00)
mm_34147.1	chr4	139360007	139360207	+	1	NA	NA	NA	7520	NM_146157	230866	Mm.394288	NM_146157	ENSMUSG00000078517	Emc1	2700016F22Rik	ER membrane protein complex subunit 1	protein-coding	0.015000	0.582090	
mm_96667.1	chr11	69409675	69409875	+	1	NA	NA	NA	3900	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.040000	0.572139	
mm_155112.1	chrX	48519431	48519631	+	1	NA	NA	NA	246	NM_011228	19337	Mm.2015	NM_011228	ENSMUSG00000031104	Rab33a	Rabs10	RAB33A, member RAS oncogene family	protein-coding	0.085000	0.641791	
mm_61493.1	chr7	75730443	75730643	+	1	NA	NA	NA	-117795	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.045000	0.507463	
mm_16507.1	chr2	181319647	181319847	+	1	NA	NA	NA	23	NM_001001882	269400	Mm.11333	NM_001001882	ENSMUSG00000038685	Rtel1	AI451565|AW540478|Rtel	regulator of telomere elongation helicase 1	protein-coding	0.090000	0.577114	
mm_37465.1	chr4	123486318	123486518	-	1	NA	NA	NA	-74507	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.015000	0.348259	
mm_104736.1	chr11	98358145	98358345	-	1	NA	NA	NA	38	NR_045477	69338	Mm.398308	NR_045477	ENSMUSG00000085944	1700003D09Rik	-	RIKEN cDNA 1700003D09 gene	ncRNA	0.060000	0.582090	
mm_122978.1	chr14	54983222	54983422	-	1	NA	NA	NA	-7546	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.000000	0.517413	
mm_170983.1	chr2	73214234	73214434	-	1	NA	NA	NA	113	NM_030091	67059	Mm.22661	NM_025942	ENSMUSG00000027108	Ola1	2510025G09Rik|2810405J23Rik|2810409H07Rik|Gtpbp9|PTD004	Obg-like ATPase 1	protein-coding	0.135000	0.736318	
mm_142310.1	chr17	42876313	42876513	-	1	NA	NA	NA	11	NM_009847	12488	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.135000	0.791045	
mm_2115.1	chr1	87878048	87878248	+	1	NA	NA	NA	-23849	NR_136921	100503175	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.010000	0.442786	-35(TTCTATAAATAG,-,0.00)
mm_131881.1	chr16	23224740	23224940	+	1	NA	NA	NA	100	NM_145933	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.045000	0.547264	
mm_158849.1	chrX	169985126	169985326	-	1	NA	NA	NA	-6309	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.035000	0.452736	
mm_44142.1	chr5	150259524	150259724	+	1	NA	NA	NA	-306	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.045000	0.592040	
mm_120504.1	chr14	66280994	66281194	+	1	NA	NA	NA	-42	NM_001162365	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.025000	0.577114	-39(TTCCTTAAAGGG,-,0.00),-37(CCTTAAAGGGTG,+,0.00)
mm_18791.1	chr2	73775214	73775414	-	1	NA	NA	NA	32	NM_001166603	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	0.210000	0.820896	
mm_55840.1	chr6	83156297	83156497	-	1	NA	NA	NA	-7	NM_027948	71837	Mm.17621	NM_027948	ENSMUSG00000030030	1700003E16Rik	AU041756	RIKEN cDNA 1700003E16 gene	protein-coding	0.105000	0.671642	
mm_171297.1	chr3	91126955	91127155	-	1	NA	NA	NA	-36250	NM_001101461	229550	Mm.98335	NM_001101461	ENSMUSG00000091175	9130204L05Rik	Gm127	RIKEN cDNA 9130204L05 gene	protein-coding	0.070000	0.641791	
mm_30426.1	chr3	152973258	152973458	-	1	NA	NA	NA	8849	NM_012028	26938	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.015000	0.457711	
mm_21669.1	chr2	164425473	164425673	-	1	NA	NA	NA	17615	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.020000	0.492537	
mm_121916.1	chr14	22635508	22635708	-	1	NA	NA	NA	-92810	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.010000	0.422886	-34(AGCTCTATAAAG,-,0.00),-32(CTCTATAAAGGC,+,0.00),-32(CTCTATAAAGGC,-,0.00)
mm_15152.1	chr2	154008136	154008336	+	1	NA	NA	NA	-40	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.010000	0.427861	
mm_78717.1	chr9	41531910	41532110	+	1	NA	NA	NA	585	NR_029790	723892		NR_029790	ENSMUSG00000093011	Mir100	Mirn100|mir-100|mmu-mir-100	microRNA 100	ncRNA	0.005000	0.422886	
mm_88382.1	chr10	76448963	76449163	+	1	NA	NA	NA	-18	NM_029816	76964	Mm.472489	NM_029816	ENSMUSG00000009114	2610028H24Rik	ORF67	RIKEN cDNA 2610028H24 gene	protein-coding	0.005000	0.557214	
mm_10149.1	chr2	4300634	4300834	+	1	NA	NA	NA	-100242	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.020000	0.492537	
mm_84025.1	chr9	57756190	57756390	-	1	NA	NA	NA	9570	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.000000	0.373134	-7(TTTTTTAAAGGT,+,0.00)
mm_154776.1	chrX	12762368	12762568	+	1	NA	NA	NA	190	NR_045852	552913	Mm.216846	NR_045852	ENSMUSG00000085891	Gm14634	OTTMUSG00000017535	predicted gene 14634	ncRNA	0.065000	0.487562	
mm_81442.1	chr9	109536964	109537164	+	1	NA	NA	NA	31198	NM_199036	382105	Mm.335468	NM_199036	ENSMUSG00000074060	Fbxw15	Fbxo12J	F-box and WD-40 domain protein 15	protein-coding	0.000000	0.502488	
mm_118445.1	chr14	8125144	8125344	+	1	NA	NA	NA	27031	NM_178279	218699	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|MONaKA	PX domain containing serine/threonine kinase	protein-coding	0.030000	0.512438	
mm_19966.1	chr2	117977068	117977268	-	1	NA	NA	NA	134034	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA	0.035000	0.547264	
mm_64509.1	chr7	143627995	143628195	+	1	NA	NA	NA	-250	NM_175649	244237	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	0.020000	0.462687	
mm_37965.1	chr4	133417069	133417269	-	1	NA	NA	NA	47393	NR_039582	100628620		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	0.030000	0.577114	
mm_132283.1	chr16	33056925	33057125	+	1	NA	NA	NA	511	NM_021338	57808	Mm.19355	NM_021338	ENSMUSG00000060636	Rpl35a	2810431L15Rik|Rpl35	ribosomal protein L35A	protein-coding	0.070000	0.582090	-29(GCCTCTATAGGG,-,0.00)
mm_6194.1	chr1	65160993	65161193	-	1	NA	NA	NA	18049	NM_010497	15926	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.015000	0.467662	23(TTGCATTAAAGG,-,0.00)
mm_61859.1	chr7	88309715	88309915	+	1	NA	NA	NA	31730	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.025000	0.467662	
mm_169993.1	chr17	15730909	15731109	+	1	NA	NA	NA	26042	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.060000	0.527363	
mm_127048.1	chr15	96643149	96643349	+	1	NA	NA	NA	-336	NM_001166458	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.030000	0.567164	
mm_19304.1	chr2	90490703	90490903	-	1	NA	NA	NA	-11629	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.020000	0.487562	
mm_81072.1	chr9	106211510	106211710	+	1	NA	NA	NA	8502	NM_011876	23999	Mm.274346	NM_011876	ENSMUSG00000023277	Twf2	A6-related|AU014993|Ptk9l|Ptk9r	twinfilin actin binding protein 2	protein-coding	0.020000	0.507463	
mm_152717.1	chr19	17511318	17511518	-	1	NA	NA	NA	117375	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.015000	0.562189	
mm_124962.1	chr15	13481227	13481427	+	1	NA	NA	NA	-307652	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.000000	0.378109	
mm_95730.1	chr11	54626355	54626555	+	1	NA	NA	NA	30309	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.010000	0.388060	-69(CCTTTTAGAGCA,+,0.00)
mm_82977.1	chr9	35849803	35850003	-	1	NA	NA	NA	-23	NR_030730	100041605	Mm.99350	NR_030730	ENSMUSG00000098705	Gm3428	-	predicted gene 3428	ncRNA	0.000000	0.537313	
mm_155146.1	chrX	52790989	52791189	+	1	NA	NA	NA	-111	NM_001034059	434778	Mm.23411	NM_001034059	ENSMUSG00000073207	Ccdc160	6330534C20Rik	coiled-coil domain containing 160	protein-coding	0.050000	0.616915	45(CCCTTTAAATCC,+,0.00)
mm_66491.1	chr7	45053223	45053423	-	1	NA	NA	NA	-442	NM_175022	233210	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	0.085000	0.656716	
mm_85008.1	chr9	87209841	87210041	-	1	NA	NA	NA	45591	NM_199316	382090	Mm.335338	NM_199316	ENSMUSG00000056919	Cep162	4922501C03Rik|mKIAA1009	centrosomal protein 162	protein-coding	0.000000	0.373134	-9(GGTCTTATAAGG,-,0.00),-7(TCTTATAAGGAG,+,0.00)
mm_71637.1	chr8	57490223	57490423	+	1	NA	NA	NA	2360	NR_126555	78353	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	0.000000	0.517413	-14(GCTTAAAGACCC,+,0.00)
mm_33077.1	chr4	123904812	123905012	+	1	NA	NA	NA	-101	NM_019660	56309	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	0.135000	0.701493	
mm_108842.1	chr12	97354450	97354650	+	1	NA	NA	NA	904909	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.005000	0.328358	70(TCCTTTATATGG,-,0.00),72(CTTTATATGGCT,+,0.00)
mm_6202.1	chr1	66348946	66349146	-	1	NA	NA	NA	27322	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.015000	0.393035	
mm_116107.1	chr13	28949286	28949486	-	1	NA	NA	NA	4296	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.020000	0.313433	
mm_86363.1	chr9	123791960	123792160	-	1	NA	NA	NA	-14417	NM_030712	80901	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.010000	0.532338	
mm_80532.1	chr9	80274630	80274830	+	1	NA	NA	NA	109696	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.000000	0.288557	-85(CTTTATAAATGC,+,0.00)
mm_43723.1	chr5	139543767	139543967	+	1	NA	NA	NA	-31	NM_013702	22255	Mm.42190	NM_013702	ENSMUSG00000029546	Uncx	Chx4|Uncx4.1	UNC homeobox	protein-coding	0.105000	0.592040	
mm_16178.1	chr2	172577549	172577749	+	1	NA	NA	NA	26658	NM_001159696	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding	0.010000	0.557214	
mm_113247.1	chr13	27354029	27354229	+	1	NA	NA	NA	8456	NM_001289919	13529	Mm.291450	NM_010088	ENSMUSG00000018259	Prl8a2	D/tPRP|DPRP|Dtprp|Ghd11|mdPRP	prolactin family 8, subfamily a, member 2	protein-coding	0.005000	0.353234	39(CTCTTTAAAAAA,-,0.00)
mm_100004.1	chr11	114851562	114851762	+	1	NA	NA	NA	122	NM_001110338	70355	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.060000	0.582090	
mm_26687.1	chr3	156562691	156562891	+	1	NA	NA	NA	997	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.010000	0.477612	
mm_21759.1	chr2	164839726	164839926	-	1	NA	NA	NA	6053	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.030000	0.587065	
mm_944.1	chr1	56972093	56972293	+	1	NA	NA	NA	724	NR_024325	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0.085000	0.671642	
mm_153239.1	chr19	36114199	36114399	-	1	NA	NA	NA	5545	NM_013468	107765	Mm.10279	NM_013468	ENSMUSG00000024803	Ankrd1	Alrp|CARP|Crap|MARP1	ankyrin repeat domain 1 (cardiac muscle)	protein-coding	0.000000	0.313433	
mm_125786.1	chr15	74716571	74716771	+	1	NA	NA	NA	1832	NM_028216	72373	Mm.46395	NM_028216	ENSMUSG00000022598	Psca	2210408B04Rik	prostate stem cell antigen	protein-coding	0.010000	0.611940	
mm_78317.1	chr9	24341558	24341758	+	1	NA	NA	NA	161482	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.005000	0.447761	9(GGCGTTTAAAGG,-,0.00),10(GCGTTTAAAGGA,-,0.00)
mm_141022.1	chr17	25140192	25140392	-	1	NA	NA	NA	3661	NM_001317404	26373	Mm.270587	NM_011930	ENSMUSG00000036636	Clcn7	ClC-7|D17Wsu51e	chloride channel, voltage-sensitive 7	protein-coding	0.010000	0.437811	
mm_67379.1	chr7	79842026	79842226	-	1	NA	NA	NA	226	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.030000	0.582090	
mm_134371.1	chr16	17130178	17130378	-	1	NA	NA	NA	2105	NM_022324	64136	Mm.30222	NM_022324	ENSMUSG00000022769	Sdf2l1	-	stromal cell-derived factor 2-like 1	protein-coding	0.000000	0.452736	74(TGGTATTAAAGG,-,0.00)
mm_20739.1	chr2	137116628	137116828	-	1	NA	NA	NA	-208	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.095000	0.592040	
mm_34082.1	chr4	138775680	138775880	+	1	NA	NA	NA	45	NM_011109	18782	Mm.71913	NM_011109	ENSMUSG00000041202	Pla2g2d	Splash|mGIID	phospholipase A2, group IID	protein-coding	0.025000	0.537313	
mm_14481.1	chr2	131514763	131514963	+	1	NA	NA	NA	23001	NM_001177838	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.010000	0.378109	
mm_51317.1	chr6	72314433	72314633	+	1	NA	NA	NA	9923	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.005000	0.452736	
mm_129877.1	chr15	83447768	83447968	-	1	NA	NA	NA	-15018	NM_001159510	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.015000	0.517413	
mm_4753.1	chr1	182287885	182288085	+	1	NA	NA	NA	-5226	NM_007853	13244	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.020000	0.562189	
mm_89962.1	chr10	111296727	111296927	+	1	NA	NA	NA	-1852	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.015000	0.462687	
mm_72828.1	chr8	88251903	88252103	+	1	NA	NA	NA	-20400	NM_007406	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.010000	0.437811	-59(TTCTTTTAAAGG,-,0.00),-58(TCTTTTAAAGGT,+,0.00)
mm_78215.1	chr9	21526076	21526276	+	1	NA	NA	NA	-1	NM_206536	382062	Mm.325205	NM_206536	ENSMUSG00000057191	AB124611	Gm1706	cDNA sequence AB124611	protein-coding	0.020000	0.601990	
mm_36436.1	chr4	82295280	82295480	-	1	NA	NA	NA	210399	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.020000	0.412935	
mm_28495.1	chr3	92484388	92484588	-	1	NA	NA	NA	1393	NM_009264	20753	Mm.331191	NM_009264	ENSMUSG00000050359	Sprr1a	AI528815|SPR1a|mSPRR1A	small proline-rich protein 1A	protein-coding	0.005000	0.666667	
mm_109046.1	chr12	104263046	104263246	+	1	NA	NA	NA	24	NM_001199940	628900	Mm.436602	NM_001199940	ENSMUSG00000079014	Serpina3i	2B2|EG628900|Gm6930	serine (or cysteine) peptidase inhibitor, clade A, member 3I	protein-coding	0.000000	0.552239	
mm_122287.1	chr14	34503234	34503434	-	1	NA	NA	NA	-788	NM_009758	12166	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK3|AU045487|BMPR-IA|Bmpr	bone morphogenetic protein receptor, type 1A	protein-coding	0.105000	0.621891	-55(GTATTTATAGTC,+,0.00)
mm_91298.1	chr10	24915996	24916196	-	1	NA	NA	NA	5432	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.035000	0.537313	
mm_136983.1	chr17	17005023	17005223	+	1	NA	NA	NA	-58980	NM_001005358	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	0.030000	0.507463	
mm_80335.1	chr9	75052014	75052214	+	1	NA	NA	NA	14382	NM_021548	59046	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	0.010000	0.368159	
mm_64523.1	chr7	143847791	143847991	+	1	NA	NA	NA	24724	NM_007856	13360	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	0.020000	0.537313	
mm_131573.1	chr16	18348127	18348327	+	1	NA	NA	NA	45	NM_001272029	11877	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velo-cardio-facial syndrome	protein-coding	0.070000	0.661692	
mm_94623.1	chr11	16778506	16778706	+	1	NA	NA	NA	26403	NM_007912	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.010000	0.467662	
mm_166051.1	chr4	131844409	131844609	-	1	NA	NA	NA	1038	NM_025297	26922	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	0.005000	0.368159	
mm_7764.1	chr1	131199824	131200024	-	1	NA	NA	NA	261	NM_001311094	54354	Mm.248291	NM_018750	ENSMUSG00000026430	Rassf5	1300019G20Rik|Maxp1|Nore1|Nore1A|Nore1B|Rapl	Ras association (RalGDS/AF-6) domain family member 5	protein-coding	0.045000	0.557214	
mm_75062.1	chr8	33731675	33731875	-	1	NA	NA	NA	-139	NM_001167921	68153	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	0.110000	0.621891	
mm_158453.1	chrX	140548494	140548694	-	1	NA	NA	NA	-5407	NM_010286	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.010000	0.492537	
mm_19303.1	chr2	90479072	90479272	-	1	NA	NA	NA	2	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.020000	0.422886	
mm_43099.1	chr5	124477987	124478187	+	1	NA	NA	NA	148	NM_030259	80291	Mm.425280	NM_030259	ENSMUSG00000029401	Rilpl2	-	Rab interacting lysosomal protein-like 2	protein-coding	0.090000	0.671642	
mm_126182.1	chr15	78609725	78609925	+	1	NA	NA	NA	12778	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.035000	0.601990	
mm_5988.1	chr1	58445349	58445549	-	1	NA	NA	NA	37	NM_027374	70225	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding	0.060000	0.587065	
mm_127861.1	chr15	8351442	8351642	-	1	NA	NA	NA	92921	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.010000	0.368159	-79(CTCCATAAAAAA,-,0.00)
mm_66193.1	chr7	34213360	34213560	-	1	NA	NA	NA	-16813	NM_026549	68079	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.010000	0.502488	
mm_85346.1	chr9	103208909	103209109	-	1	NA	NA	NA	-6944	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.010000	0.527363	
mm_14331.1	chr2	129490072	129490272	+	1	NA	NA	NA	46430	NM_177653	228592	Mm.452175	NM_177653	ENSMUSG00000043727	F830045P16Rik	Sirpb3	RIKEN cDNA F830045P16 gene	protein-coding	0.000000	0.388060	29(GCTTCTAAAAGA,-,0.00)
mm_167697.1	chr9	88542318	88542518	+	1	NA	NA	NA	-5602	NM_001142943	71640	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik	zinc finger protein 949	protein-coding	0.010000	0.452736	
mm_37795.1	chr4	130520022	130520222	-	1	NA	NA	NA	53914	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.045000	0.606965	
mm_5129.1	chr1	9667601	9667801	-	1	NA	NA	NA	32508	NM_001290397	17864	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	0.005000	0.328358	
mm_128996.1	chr15	74841522	74841722	-	1	NA	NA	NA	21	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.010000	0.512438	
mm_130447.1	chr15	98528942	98529142	-	1	NA	NA	NA	-2583	NR_034052	100217416	Mm.296240	NR_034052	ENSMUSG00000065939	Snora2b	MBI-137	small nucleolar RNA, H/ACA box 2B	snoRNA	0.015000	0.373134	
mm_118344.1	chr13	114607002	114607202	-	1	NA	NA	NA	-126	NR_045976	75161	Mm.50406	NM_175218	ENSMUSG00000051758	4930544M13Rik	-	RIKEN cDNA 4930544M13 gene	ncRNA	0.005000	0.363184	
mm_78274.1	chr9	22070927	22071127	+	1	NA	NA	NA	25	NR_040406	100503652	Mm.439941	NR_040406	ENSMUSG00000096981	Gm16845	-	predicted gene, 16845	ncRNA	0.115000	0.746269	
mm_151317.1	chr19	55885793	55885993	+	1	NA	NA	NA	-9428	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.010000	0.427861	
mm_164143.1	chr15	59416531	59416731	-	1	NA	NA	NA	42433	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.000000	0.402985	85(TACTATAAATGC,-,0.00)
mm_60781.1	chr7	45565079	45565279	+	1	NA	NA	NA	-4974	NM_009737	12036	Mm.24210	NM_009737	ENSMUSG00000030826	Bcat2	Bcat-2|Eca40	branched chain aminotransferase 2, mitochondrial	protein-coding	0.005000	0.522388	
mm_154828.1	chrX	18145764	18145964	+	1	NA	NA	NA	-6	NM_028568	73547	Mm.159027	NM_028568	ENSMUSG00000025043	Dusp21	1700094E07Rik|DSP21	dual specificity phosphatase 21	protein-coding	0.005000	0.497512	
mm_51995.1	chr6	92156880	92157080	+	1	NA	NA	NA	27043	NM_025578	64658	Mm.87062	NM_025578	ENSMUSG00000014551	Mrps25	2810429N01Rik|Rpms25	mitochondrial ribosomal protein S25	protein-coding	0.000000	0.313433	69(TGGTTTTAAAGA,-,0.00)
mm_67324.1	chr7	79721191	79721391	-	1	NA	NA	NA	-7105	NM_001291222	16576	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0.045000	0.527363	
mm_85704.1	chr9	108111186	108111386	-	1	NA	NA	NA	-16806	NM_146226	235606	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0.035000	0.631841	
mm_172005.1	chr6	108708297	108708497	+	1	NA	NA	NA	-47463	NR_104577	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.055000	0.487562	
mm_19533.1	chr2	94400318	94400518	-	1	NA	NA	NA	6271	NM_183106	74569	Mm.248504	NM_183106	ENSMUSG00000027194	Ttc17	9130020K17Rik|D2Bwg1005e	tetratricopeptide repeat domain 17	protein-coding	0.000000	0.407960	
mm_159512.1	chr4	58911927	58912127	-	1	NA	NA	NA	698	NM_172381	230249	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|mKIAA0368	expressed sequence AI314180	protein-coding	0.210000	0.845771	
mm_158082.1	chrX	101265625	101265825	-	1	NA	NA	NA	-1733	NM_001317221	245536	Mm.212463	NM_001033362	ENSMUSG00000090141	Gm614	-	predicted gene 614	protein-coding	0.010000	0.462687	
mm_108826.1	chr12	95740096	95740296	+	1	NA	NA	NA	47970	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.005000	0.348259	
mm_72226.1	chr8	72741770	72741970	+	1	NA	NA	NA	18600	NM_009188	20467	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0.035000	0.542289	
mm_138530.1	chr17	35242964	35243164	+	1	NA	NA	NA	247	NM_001252457	53817	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	0.040000	0.472637	
mm_67028.1	chr7	66427376	66427576	-	1	NA	NA	NA	1	NM_053080	56847	Mm.140988	NM_053080	ENSMUSG00000015134	Aldh1a3	ALDH6|RALDH3|V1	aldehyde dehydrogenase family 1, subfamily A3	protein-coding	0.090000	0.686567	-33(CTGCATAAAGGC,-,0.00)
mm_124321.1	chr14	103346703	103346903	-	1	NA	NA	NA	-3	NM_207215	105689	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.115000	0.731343	
mm_162343.1	chr1	50958590	50958790	+	1	NA	NA	NA	31167	NM_019790	56363	Mm.245154	NM_019790	ENSMUSG00000026109	Tmeff2	4832418D20Rik|7630402F16Rik|TR-2	transmembrane protein with EGF-like and two follistatin-like domains 2	protein-coding	0.000000	0.378109	
mm_75901.1	chr8	71272275	71272475	-	1	NA	NA	NA	215	NM_001163042	76478	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding	0.085000	0.641791	
mm_37486.1	chr4	123575606	123575806	-	1	NA	NA	NA	-40714	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.005000	0.422886	31(AGCTTTAAAAAG,-,0.00),32(GCTTTAAAAAGG,+,0.00),33(CTTTAAAAAGGG,+,0.00),42(GGGTTTATAGGC,-,0.00)
mm_59484.1	chr7	27462562	27462762	+	1	NA	NA	NA	10244	NM_001290525	233016	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0.030000	0.597015	
mm_56541.1	chr6	99726193	99726393	-	1	NA	NA	NA	99	NM_001037539	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.140000	0.726368	
mm_47229.1	chr5	121384447	121384647	-	1	NA	NA	NA	1068	NM_001163470	231712	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.020000	0.437811	
mm_117482.1	chr13	77135354	77135554	-	1	NA	NA	NA	14	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0.105000	0.616915	
mm_112061.1	chr12	111966583	111966783	-	1	NA	NA	NA	294	NM_027360	70257	Mm.318	NM_027360	ENSMUSG00000021290	2010107E04Rik	9430003J03Rik|AU043134|AV124504|Mp68	RIKEN cDNA 2010107E04 gene	protein-coding	0.070000	0.646766	
mm_161657.1	chr17	6984917	6985117	+	1	NA	NA	NA	6157	NM_026611	68195	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	0.010000	0.378109	-25(CCTTATATAAAA,+,0.00)
mm_67050.1	chr7	67335152	67335352	-	1	NA	NA	NA	37606	NM_001291192	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.010000	0.343284	
mm_139771.1	chr17	64719065	64719265	+	1	NA	NA	NA	-47946	NR_105051	101202683	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.015000	0.303483	20(CCATTTATAACC,+,0.00)
mm_259.1	chr1	20730806	20731006	+	1	NA	NA	NA	1	NM_010552	16171	Mm.5419	NM_010552	ENSMUSG00000025929	Il17a	Ctla-8|Ctla8|IL-17|IL-17A|Il17	interleukin 17A	protein-coding	0.025000	0.502488	-35(CCGTATAAAAAG,-,0.00)
mm_86039.1	chr9	114390560	114390760	-	1	NA	NA	NA	52	NM_019922	56693	Mm.20904	NM_019922	ENSMUSG00000032431	Crtap	5730529N23Rik|CASP|Leprel3|P3h5	cartilage associated protein	protein-coding	0.120000	0.751244	
mm_86053.1	chr9	114563995	114564195	-	1	NA	NA	NA	274	NM_001042503	636931	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	0.145000	0.721393	
mm_130854.1	chr15	102073500	102073700	-	1	NA	NA	NA	-173	NM_145625	75705	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0.090000	0.577114	
mm_43413.1	chr5	135962826	135963026	+	1	NA	NA	NA	11550	NM_001160366	109267	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0.065000	0.651741	-88(CTCCATATAAAC,-,0.00),-86(CCATATAAACCC,+,0.00)
mm_95820.1	chr11	55217621	55217821	+	1	NA	NA	NA	13381	NM_153139	215335	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0.005000	0.497512	
mm_18482.1	chr2	62592097	62592297	-	1	NA	NA	NA	-18176	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.015000	0.348259	
mm_89954.1	chr10	111293525	111293725	+	1	NA	NA	NA	-5054	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.015000	0.358209	
mm_50.1	chr1	6527825	6528025	+	1	NA	NA	NA	40694	NM_001244692	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.015000	0.407960	
mm_157740.1	chrX	72918319	72918519	-	1	NA	NA	NA	-75	NM_019405	26370	Mm.24643	NM_019405	ENSMUSG00000031347	Cetn2	1110034A02Rik|AI326150|Calt|caltractin	centrin 2	protein-coding	0.080000	0.611940	
mm_117602.1	chr13	90089011	90089211	-	1	NA	NA	NA	497	NM_028012	108138	Mm.37531	NM_028012	ENSMUSG00000021615	Xrcc4	2310057B22Rik|AW413319|AW545101	X-ray repair complementing defective repair in Chinese hamster cells 4	protein-coding	0.035000	0.572139	
mm_131421.1	chr16	14708049	14708249	+	1	NA	NA	NA	2290	NM_011415	20583	Mm.4272	NM_011415	ENSMUSG00000022676	Snai2	Slug|Slugh|Snail2	snail family zinc finger 2	protein-coding	0.000000	0.427861	-85(TCCTATAAAAAG,-,0.00)
mm_82273.1	chr9	7352897	7353097	-	1	NA	NA	NA	5623	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.442786	
mm_43290.1	chr5	134183922	134184122	+	1	NA	NA	NA	-16	NM_053266	114674	Mm.218744	NM_053266	ENSMUSG00000015942	Gtf2ird2	1700012P16Rik	GTF2I repeat domain containing 2	protein-coding	0.105000	0.611940	
mm_155796.1	chrX	98938088	98938288	+	1	NA	NA	NA	407	NM_207633	77929	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	0.105000	0.671642	
mm_100529.1	chr11	120598560	120598760	+	1	NA	NA	NA	128	NM_001038230	66156	Mm.21645	NM_025389	ENSMUSG00000025135	Anapc11	1110011I19Rik|R75218	anaphase promoting complex subunit 11	protein-coding	0.140000	0.756219	
mm_3997.1	chr1	164488856	164489056	+	1	NA	NA	NA	-30601	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.010000	0.502488	
mm_159091.1	chr2	32320732	32320932	-	1	NA	NA	NA	2372	NR_029811	387239		NR_029811	ENSMUSG00000092807	Mir199b	Mirn199b|mir-199b	microRNA 199b	ncRNA	0.025000	0.527363	
mm_36861.1	chr4	106911253	106911453	-	1	NA	NA	NA	-117	NM_198438	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.170000	0.820896	
mm_135217.1	chr16	36656724	36656924	-	1	NA	NA	NA	9253	NM_019388	12524	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.000000	0.422886	
mm_48640.1	chr5	145201751	145201951	-	1	NA	NA	NA	31	NM_023322	67235	Mm.432480	NM_023322	ENSMUSG00000029627	Zkscan14	2310046C23Rik|2810437E14Rik|Zfp99|Znf394	zinc finger with KRAB and SCAN domains 14	protein-coding	0.075000	0.557214	52(CCTTTTCTGGGC,+,0.00)
mm_64040.1	chr7	140773043	140773243	+	1	NA	NA	NA	9311	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.040000	0.547264	
mm_136163.1	chr16	88562964	88563164	-	1	NA	NA	NA	119	NM_018778	54420	Mm.25836	NM_018778	ENSMUSG00000050520	Cldn8	AI648025	claudin 8	protein-coding	0.030000	0.542289	
mm_20036.1	chr2	119878354	119878554	-	1	NA	NA	NA	-18774	NM_001164274	29808	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	0.020000	0.457711	
mm_23749.1	chr3	69397211	69397411	+	1	NA	NA	NA	80393	NM_178726	242083	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	0.015000	0.353234	
mm_57371.1	chr6	124780358	124780558	-	1	NA	NA	NA	-731	NM_001302555	16977	Mm.3207	NM_013588	ENSMUSG00000030125	Lrrc23	4921537K05Rik|B7|Lrpb7	leucine rich repeat containing 23	protein-coding	0.015000	0.388060	
mm_96605.1	chr11	69091348	69091548	+	1	NA	NA	NA	2920	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.010000	0.537313	
mm_168323.1	chr11	115536076	115536276	-	1	NA	NA	NA	54	NM_133354	170930	Mm.29923	NM_133354	ENSMUSG00000020738	Sumo2	SUMO-2|Smt3A|Smt3b|Smt3h2	small ubiquitin-like modifier 2	protein-coding	0.120000	0.716418	
mm_70291.1	chr8	3665655	3665855	+	1	NA	NA	NA	-7	NM_026985	69189	Mm.175176	NM_026985	ENSMUSG00000013974	Mcemp1	1810033B17Rik	mast cell expressed membrane protein 1	protein-coding	0.025000	0.537313	
mm_124933.1	chr15	12205042	12205242	+	1	NA	NA	NA	48	NM_172958	268783	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.145000	0.766169	
mm_48151.1	chr5	137151014	137151214	-	1	NA	NA	NA	-34907	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.492537	
mm_28669.1	chr3	95281738	95281938	-	1	NA	NA	NA	238	NM_173347	229589	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	0.065000	0.611940	
mm_106195.1	chr11	116842724	116842924	-	1	NA	NA	NA	625	NM_033398	107817	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	0.080000	0.621891	
mm_83382.1	chr9	44568032	44568232	-	1	NA	NA	NA	-36760	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.035000	0.577114	
mm_111224.1	chr12	84698694	84698894	-	1	NA	NA	NA	13	NM_001033334	627191	Mm.152484	NM_001033334	ENSMUSG00000071234	Syndig1l	DSPC1|Gm261|Tmem90a	synapse differentiation inducing 1 like	protein-coding	0.150000	0.796020	
mm_77279.1	chr8	116708057	116708257	-	1	NA	NA	NA	24834	NM_029441	75796	Mm.159575	NM_029441	ENSMUSG00000031758	Cdyl2	1700029M19Rik|4930453I21Rik|Gm20194	chromodomain protein, Y chromosome-like 2	protein-coding	0.000000	0.283582	
mm_87623.1	chr10	57802323	57802523	+	1	NA	NA	NA	7879	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.010000	0.432836	
mm_65674.1	chr7	28310302	28310502	-	1	NA	NA	NA	1644	NM_025616	66525	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	0.000000	0.537313	
mm_19459.1	chr2	92389192	92389392	-	1	NA	NA	NA	-1846	NR_105966	102466783		NR_105966	ENSMUSG00000099093	Mir7000	Gm27338|mmu-mir-7000	microRNA 7000	ncRNA	0.100000	0.726368	
mm_89731.1	chr10	98986993	98987193	+	1	NA	NA	NA	71941	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.035000	0.552239	
mm_67994.1	chr7	100894607	100894807	-	1	NA	NA	NA	-12298	NR_037289	100526508		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	0.135000	0.776119	
mm_58365.1	chr6	148814829	148815029	-	1	NA	NA	NA	16538	NM_001081113	320727	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	0.005000	0.378109	
mm_55803.1	chr6	82824229	82824429	-	1	NA	NA	NA	-49875	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.015000	0.482587	
mm_124254.1	chr14	101892169	101892369	-	1	NA	NA	NA	51646	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.030000	0.517413	
mm_89646.1	chr10	96764906	96765106	+	1	NA	NA	NA	148005	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.010000	0.417910	
mm_166446.1	chr5	137265878	137266078	-	1	NA	NA	NA	-22276	NM_009599	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.000000	0.427861	
mm_116540.1	chr13	45923565	45923765	-	1	NA	NA	NA	41326	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.010000	0.417910	50(GCCTTTTAAAAA,-,0.00),51(CCTTTTAAAAAT,+,0.00)
mm_116703.1	chr13	50595413	50595613	-	1	NA	NA	NA	5567	NR_030453	751559		NR_030453	ENSMUSG00000095697	Mir683-1	Gm26093|Mirn683|Mirn683-1|Mirn683a|mmu-mir-683|mmu-mir-683-1	microRNA 683-1	ncRNA	0.010000	0.467662	
mm_148085.1	chr18	73662625	73662825	-	1	NA	NA	NA	41016	NM_008540	17128	Mm.100399	NM_008540	ENSMUSG00000024515	Smad4	AW743858|D18Wsu70e|DPC4|Madh4	SMAD family member 4	protein-coding	0.065000	0.547264	
mm_39959.1	chr5	32136428	32136628	+	1	NA	NA	NA	56	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.115000	0.676617	-87(CTTTTTAGAGGG,+,0.00)
mm_152053.1	chr19	6277645	6277845	-	1	NA	NA	NA	849	NM_010119	13660	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.020000	0.532338	-18(CACTTTAAAAAC,-,0.00),-16(CTTTAAAAACGG,+,0.00)
mm_23313.1	chr3	53175376	53175576	+	1	NA	NA	NA	133929	NM_175386	108927	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968	lipoma HMGIC fusion partner	protein-coding	0.015000	0.348259	
mm_8420.1	chr1	152386500	152386700	-	1	NA	NA	NA	82	NM_025677	66637	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	0.140000	0.726368	
mm_58526.1	chr7	4147750	4147950	+	1	NA	NA	NA	2022	NM_175529	243813	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.010000	0.462687	
mm_82563.1	chr9	21073418	21073618	-	1	NA	NA	NA	-4	NM_001039824	68165	Mm.490294	NM_001039824	ENSMUSG00000079677	Fdx1l	B230118G17Rik|Fdx2	ferredoxin 1-like	protein-coding	0.100000	0.676617	
mm_37759.1	chr4	129672643	129672843	-	1	NA	NA	NA	24	NM_008468	16650	Mm.202358	NM_008468	ENSMUSG00000003731	Kpna6	IPOA7|Kpna5|NPI-2	karyopherin (importin) alpha 6	protein-coding	0.110000	0.636816	
mm_49367.1	chr6	23248672	23248872	+	1	NA	NA	NA	-508	NM_028462	73191	Mm.55115	NM_028462	ENSMUSG00000029697	Fezf1	3110069A13Rik|Fez|Zfp312-like|fez-like	Fez family zinc finger 1	protein-coding	0.030000	0.492537	
mm_136442.1	chr16	94571029	94571229	-	1	NA	NA	NA	222	NM_001113389	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.050000	0.592040	-45(GCCTATAAATAG,-,0.00)
mm_169048.1	chr13	16499749	16499949	+	1	NA	NA	NA	487998	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.025000	0.567164	
mm_59900.1	chr7	30308666	30308866	+	1	NA	NA	NA	13	NM_198027	233065	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	0.065000	0.582090	
mm_66623.1	chr7	45474967	45475167	-	1	NA	NA	NA	-8169	NM_007527	12028	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.025000	0.517413	
mm_78599.1	chr9	37488894	37489094	+	1	NA	NA	NA	-327	NM_146222	235184	Mm.127892	NM_146222	ENSMUSG00000042138	Msantd2	2810450G17Rik|9530092B10Rik	Myb/SANT-like DNA-binding domain containing 2	protein-coding	0.045000	0.592040	
mm_17175.1	chr2	25332388	25332588	-	1	NA	NA	NA	83	NR_027448	100272219	Mm.382103	NR_027448	ENSMUSG00000097345	AA543186	-	expressed sequence AA543186	ncRNA	0.090000	0.606965	
mm_37523.1	chr4	124699415	124699615	-	1	NA	NA	NA	-1184	NM_010213	14201	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	0.010000	0.417910	
mm_48104.1	chr5	137071033	137071233	-	1	NA	NA	NA	1139	NM_008871	18787	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.045000	0.562189	
mm_141175.1	chr17	26841145	26841345	-	1	NA	NA	NA	320	NM_008700	18091	Mm.41974	NM_008700	ENSMUSG00000015579	Nkx2-5	Csx|Nkx-2.5|Nkx2.5|tinman	NK2 homeobox 5	protein-coding	0.080000	0.701493	
mm_137781.1	chr17	29493076	29493276	+	1	NA	NA	NA	2131	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.015000	0.532338	-34(GTGTATAAAGGC,-,0.00)
mm_66425.1	chr7	44553828	44554028	-	1	NA	NA	NA	37	NM_009473	22260	Mm.968	NM_009473	ENSMUSG00000060601	Nr1h2	AI194859|LXR|LXRB|LXRBSV|LXRbeta|NER1|OR-1|RIP15|UR|Unr|Unr2	nuclear receptor subfamily 1, group H, member 2	protein-coding	0.075000	0.587065	
mm_31381.1	chr4	47943653	47943853	+	1	NA	NA	NA	-101552	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.005000	0.378109	
mm_73680.1	chr8	111536919	111537119	+	1	NA	NA	NA	379	NM_001168621	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.050000	0.567164	
mm_20463.1	chr2	129367334	129367534	-	1	NA	NA	NA	-2468	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.005000	0.427861	
mm_87022.1	chr10	28074833	28075033	+	1	NA	NA	NA	113	NM_008983	19272	Mm.332303	NM_008983	ENSMUSG00000019889	Ptprk	AI853699|PTPk|RPTPkappa	protein tyrosine phosphatase, receptor type, K	protein-coding	0.140000	0.716418	
mm_62020.1	chr7	91542919	91543119	+	1	NA	NA	NA	452233	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.040000	0.587065	
mm_164412.1	chr16	37836368	37836568	+	1	NA	NA	NA	-31932	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.005000	0.288557	
mm_120351.1	chr14	63943842	63944042	+	1	NA	NA	NA	236	NM_011446	20680	Mm.42162	NM_011446	ENSMUSG00000063060	Sox7	-	SRY (sex determining region Y)-box 7	protein-coding	0.085000	0.636816	
mm_99980.1	chr11	114666915	114667115	+	1	NA	NA	NA	-1528	NM_023372	67671	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.020000	0.542289	
mm_32368.1	chr4	105261252	105261452	+	1	NA	NA	NA	104005	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.015000	0.467662	-34(GACCATAAATAG,-,0.00),-32(CCATAAATAGCA,+,0.00)
mm_1685.1	chr1	74856540	74856740	+	1	NA	NA	NA	1611	NM_009872	12570	Mm.153833	NM_009872	ENSMUSG00000090071	Cdk5r2	B230310J22Rik|p39	cyclin-dependent kinase 5, regulatory subunit 2 (p39)	protein-coding	0.040000	0.587065	
mm_48322.1	chr5	138994018	138994218	-	1	NA	NA	NA	835	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.065000	0.666667	87(CCCTTTTAAAAA,-,0.00),88(CCTTTTAAAAAC,+,0.00),89(CTTTTAAAAACC,+,0.00)
mm_39734.1	chr5	29195978	29196178	+	1	NA	NA	NA	85	NR_110371	56874	Mm.87352	NM_021470	ENSMUSG00000029130	Rnf32	1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2	ring finger protein 32	protein-coding	0.090000	0.636816	
mm_167299.1	chr8	55059132	55059332	+	1	NA	NA	NA	104504	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.005000	0.283582	
mm_56161.1	chr6	87980873	87981073	-	1	NA	NA	NA	509	NM_198622	243529	Mm.33796	NM_198622	ENSMUSG00000044927	H1fx	Gm461|H1.10|H1X	H1 histone family, member X	protein-coding	0.150000	0.721393	
mm_77778.1	chr9	3018871	3019071	+	1	NA	NA	NA	19772	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.015000	0.348259	
mm_63922.1	chr7	139347672	139347872	+	1	NA	NA	NA	-41337	NM_183144	212111	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.000000	0.437811	
mm_51377.1	chr6	73222950	73223150	+	1	NA	NA	NA	-1419	NM_001164669	330355	Mm.333166	NM_001164669	ENSMUSG00000052861	Dnah6	9830168K20|A730004I20Rik|Dnahc6|mKIAA1697|mdhc6	dynein, axonemal, heavy chain 6	protein-coding	0.020000	0.562189	-36(GTCCTTATATGG,-,0.00),-34(CCTTATATGGGG,+,0.00)
mm_147047.1	chr18	34931705	34931905	-	1	NA	NA	NA	198	NM_144866	225363	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.130000	0.766169	
mm_158464.1	chrX	140813365	140813565	-	1	NA	NA	NA	-32	NM_031381	83555	Mm.193025	NM_031381	ENSMUSG00000042386	Tex13b	4933403J23Rik|Tex13	testis expressed 13B	protein-coding	0.050000	0.512438	
mm_164444.1	chr16	49855391	49855591	+	1	NA	NA	NA	-163	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.085000	0.681592	
mm_59357.1	chr7	25681084	25681284	+	1	NA	NA	NA	26	NM_172148	232987	Mm.22849	NM_172148	ENSMUSG00000063439	B9d2	stumpy	B9 protein domain 2	protein-coding	0.025000	0.547264	23(GCTTTTCTGGGG,+,0.00)
mm_160665.1	chr9	120128379	120128579	+	1	NA	NA	NA	713	NM_011029	16785	Mm.4071	NM_011029	ENSMUSG00000032518	Rpsa	67kDa|67lr|AL022858|Lamr|Lamr1|Lamrl1|MLR|P40|P40-3|P40-8	ribosomal protein SA	protein-coding	0.020000	0.467662	
mm_62653.1	chr7	107693062	107693262	+	1	NA	NA	NA	64870	NM_001205227	320635	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	0.015000	0.447761	
mm_142569.1	chr17	46676661	46676861	-	1	NA	NA	NA	-2506	NM_144857	224823	Mm.45101	NM_144857	ENSMUSG00000023971	Rrp36	-	ribosomal RNA processing 36 homolog (S. cerevisiae)	protein-coding	0.030000	0.542289	
mm_61404.1	chr7	73409475	73409675	+	1	NA	NA	NA	-33801	NR_040324	319783	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.055000	0.616915	
mm_88474.1	chr10	77606516	77606716	+	1	NA	NA	NA	18	NM_001301671	20610	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.115000	0.701493	
mm_136541.1	chr16	97851725	97851925	-	1	NA	NA	NA	-598	NM_144789	114604	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	0.130000	0.741294	
mm_28472.1	chr3	92080299	92080499	-	1	NA	NA	NA	2743	NM_008508	16939	Mm.1121	NM_008508	ENSMUSG00000043165	Lor	AI036317|S77319	loricrin	protein-coding	0.025000	0.482587	
mm_26388.1	chr3	142570458	142570658	+	1	NA	NA	NA	10062	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.005000	0.447761	
mm_40034.1	chr5	33658492	33658692	+	1	NA	NA	NA	464	NM_001040435	21335	Mm.379024	NM_011524	ENSMUSG00000037313	Tacc3	Aint|C86661|Eric1	transforming, acidic coiled-coil containing protein 3	protein-coding	0.110000	0.626866	
mm_67711.1	chr7	89980389	89980589	-	1	NA	NA	NA	487	NM_021876	13626	Mm.380914	NM_021876	ENSMUSG00000030619	Eed	ENSMUSG00000039373|l(7)5Rn|l7Rn5|lusk	embryonic ectoderm development	protein-coding	0.100000	0.661692	
mm_44583.1	chr5	24908301	24908501	-	1	NA	NA	NA	108	NM_001170556	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.130000	0.761194	
mm_157517.1	chrX	49797628	49797828	-	1	NA	NA	NA	17	NM_177915	209268	Mm.110505	NM_177591	ENSMUSG00000031111	Igsf1	5330413N23|5530402E03|AI747649|InhBP/p120|mKIAA0364	immunoglobulin superfamily, member 1	protein-coding	0.055000	0.626866	
mm_97331.1	chr11	77216075	77216275	+	1	NA	NA	NA	-250	NM_177710	237860	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot homolog 2 (Drosophila)	protein-coding	0.170000	0.771144	
mm_80579.1	chr9	84049257	84049457	+	1	NA	NA	NA	100576	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.000000	0.447761	
mm_166964.1	chr7	44480742	44480942	+	1	NA	NA	NA	-3675	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.402985	
mm_134763.1	chr16	23449731	23449931	-	1	NA	NA	NA	20698	NM_001004151	239766	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0.000000	0.398010	-27(CCATTTAAATGC,+,0.00)
mm_82637.1	chr9	21989316	21989516	-	1	NA	NA	NA	37	NM_023622	71746	Mm.110594	NM_023622	ENSMUSG00000040146	Rgl3	1300003D20Rik|mFLJ00153	ral guanine nucleotide dissociation stimulator-like 3	protein-coding	0.075000	0.716418	
mm_116386.1	chr13	41183978	41184178	-	1	NA	NA	NA	36084	NM_001311121	54326	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0.010000	0.472637	
mm_67925.1	chr7	99889198	99889398	-	1	NA	NA	NA	30080	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.015000	0.422886	
mm_16592.1	chr2	4651969	4652169	-	1	NA	NA	NA	17	NM_026045	67229	Mm.38529	NM_026045	ENSMUSG00000039449	Prpf18	2810441A10Rik	pre-mRNA processing factor 18	protein-coding	0.060000	0.582090	
mm_8616.1	chr1	156036336	156036536	-	1	NA	NA	NA	44	NM_144791	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.060000	0.681592	
mm_4352.1	chr1	171898937	171899137	+	1	NA	NA	NA	-18425	NM_001347187	30925	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	0.000000	0.402985	
mm_139123.1	chr17	47504743	47504943	+	1	NA	NA	NA	-208	NM_001081636	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.045000	0.542289	
mm_162018.1	chr19	45235358	45235558	-	1	NA	NA	NA	-222	NM_010691	16814	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox homolog 1 (Drosophila)	protein-coding	0.160000	0.761194	-95(CTTTAAATAGCA,+,0.00)
mm_137820.1	chr17	30155865	30156065	+	1	NA	NA	NA	100570	NR_105839	102465223		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0.000000	0.402985	
mm_50601.1	chr6	49218342	49218542	+	1	NA	NA	NA	-3488	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.040000	0.417910	
mm_72671.1	chr8	84908615	84908815	+	1	NA	NA	NA	91	NM_010062	13423	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	0.070000	0.587065	-16(CGGTTTTTAGGG,-,0.00),-14(GTTTTTAGGGGA,+,0.00),34(TCTTTTAGAGTC,+,0.00)
mm_84147.1	chr9	59464998	59465198	-	1	NA	NA	NA	16643	NR_045640	100504377	Mm.446631	NR_045640		Gm20199	-	predicted gene, 20199	ncRNA	0.005000	0.442786	
mm_107108.1	chr12	17881797	17881997	+	1	NA	NA	NA	191083	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.135000	0.716418	
mm_147581.1	chr18	56470809	56471009	-	1	NA	NA	NA	38777	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.055000	0.547264	
mm_1649.1	chr1	74661545	74661745	+	1	NA	NA	NA	-109	NM_001014974	67534	Mm.260714	NM_001014974	ENSMUSG00000033257	Ttll4	4632407P03Rik|AI451681|mKIAA0173	tubulin tyrosine ligase-like family, member 4	protein-coding	0.060000	0.641791	
mm_131020.1	chr15	103564137	103564337	-	1	NA	NA	NA	844	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.000000	0.417910	
mm_121766.1	chr14	19860510	19860710	-	1	NA	NA	NA	21685	NR_105025	52512	Mm.483998	NR_105025		D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.025000	0.442786	-33(GGGCCTAAAGGC,-,0.00)
mm_117597.1	chr13	89742569	89742769	-	1	NA	NA	NA	-157	NM_001134475	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.035000	0.597015	
mm_100566.1	chr11	120730692	120730892	+	1	NA	NA	NA	1229	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.030000	0.587065	
mm_19219.1	chr2	84650465	84650665	-	1	NA	NA	NA	-55	NM_001085453	12388	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.040000	0.567164	
mm_64018.1	chr7	140247218	140247418	+	1	NA	NA	NA	17	NM_175533	244234	Mm.85125	NM_175533	ENSMUSG00000054672	5830411N06Rik	Scart2	RIKEN cDNA 5830411N06 gene	protein-coding	0.005000	0.512438	
mm_157132.1	chrX	9450687	9450887	-	1	NA	NA	NA	18537	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.025000	0.388060	
mm_96445.1	chr11	67455271	67455471	+	1	NA	NA	NA	-77627	NM_008088	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.145000	0.800995	
mm_9223.1	chr1	171234546	171234746	-	1	NA	NA	NA	-297	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.010000	0.467662	-3(GGGTATATAAAG,-,0.00)
mm_100356.1	chr11	118443426	118443626	+	1	NA	NA	NA	-8	NM_001204130	56745	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.010000	0.537313	
mm_29520.1	chr3	116507995	116508195	-	1	NA	NA	NA	80	NM_025517	66368	Mm.251228	NM_025517	ENSMUSG00000000339	Rtca	2310009A18Rik|AI450277|RPC|Rtcd1	RNA 3'-terminal phosphate cyclase	protein-coding	0.110000	0.681592	
mm_35905.1	chr4	49631852	49632052	-	1	NA	NA	NA	-108	NM_001163263	109331	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0.085000	0.611940	
mm_31183.1	chr4	43519147	43519347	+	1	NA	NA	NA	4307	NM_009416	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.030000	0.616915	
mm_84445.1	chr9	66126481	66126681	-	1	NA	NA	NA	-30	NM_026635	68250	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	0.060000	0.502488	
mm_41805.1	chr5	103754109	103754309	+	1	NA	NA	NA	47	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.150000	0.746269	
mm_121639.1	chr14	8378734	8378934	-	1	NA	NA	NA	-71	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.015000	0.552239	
mm_42044.1	chr5	108461178	108461378	+	1	NA	NA	NA	-54	NM_172716	69587	Mm.261218	NM_172716	ENSMUSG00000033623	Pcgf3	2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3	polycomb group ring finger 3	protein-coding	0.070000	0.646766	
mm_141738.1	chr17	34122124	34122324	-	1	NA	NA	NA	383	NM_001204973	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.065000	0.741294	
mm_64534.1	chr7	144175399	144175599	+	1	NA	NA	NA	-21	NM_001113373	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.060000	0.507463	
mm_61371.1	chr7	69918077	69918277	+	1	NA	NA	NA	419645	NR_131145	624549	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	-	predicted gene, 29683	ncRNA	0.005000	0.383085	
mm_128710.1	chr15	63943185	63943385	-	1	NA	NA	NA	28824	NR_029414	74460	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0.025000	0.482587	
mm_20796.1	chr2	144255499	144255699	-	1	NA	NA	NA	10603	NR_030762	100313519	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.010000	0.393035	
mm_2205.1	chr1	89580151	89580351	+	1	NA	NA	NA	103641	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.185000	0.800995	
mm_3501.1	chr1	150106904	150107104	+	1	NA	NA	NA	6973	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.025000	0.447761	
mm_135994.1	chr16	75240066	75240266	-	1	NA	NA	NA	345895	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.005000	0.293532	86(TCCTTTATAGCT,+,0.00)
mm_34486.1	chr4	148558346	148558546	+	1	NA	NA	NA	19	NR_131061	50912	Mm.266635	NM_016699	ENSMUSG00000017264	Exosc10	PM-Scl|PM/Scl-100|Pmscl2|RRP6|p2|p3|p4	exosome component 10	protein-coding	0.110000	0.651741	
mm_76093.1	chr8	79711563	79711763	-	1	NA	NA	NA	77	NM_015751	24015	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	0.125000	0.656716	
mm_133907.1	chr16	97550407	97550607	+	1	NA	NA	NA	14424	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.015000	0.422886	-81(CCATATATACTG,+,0.00)
mm_51805.1	chr6	88724800	88725000	+	1	NA	NA	NA	196	NM_001166251	23945	Mm.272197	NM_011844	ENSMUSG00000033174	Mgll	AA589436|Magl|Mgl	monoglyceride lipase	protein-coding	0.115000	0.661692	
mm_133107.1	chr16	65473697	65473897	+	1	NA	NA	NA	-46832	NM_008849	18736	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.015000	0.641791	
mm_140693.1	chr17	13761287	13761487	-	1	NA	NA	NA	7	NM_022311	21646	Mm.486358	NM_022311	ENSMUSG00000038347	Tcte2	AI429268|Tcte-2	t-complex-associated testis expressed 2	protein-coding	0.175000	0.756219	
mm_53711.1	chr6	143203932	143204132	+	1	NA	NA	NA	36802	NM_029250	75320	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0.000000	0.333333	
mm_41230.1	chr5	88720853	88721053	+	1	NA	NA	NA	82	NM_026735	68473	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	0.140000	0.726368	
mm_59065.1	chr7	19463180	19463380	+	1	NA	NA	NA	-4786	NM_172279	232944	Mm.260504	NM_172279	ENSMUSG00000030397	Mark4	2410090P21Rik|C79806|Markl1	MAP/microtubule affinity regulating kinase 4	protein-coding	0.005000	0.601990	
mm_7101.1	chr1	88779826	88780026	-	1	NA	NA	NA	25036	NR_040493	78650	Mm.243767	NR_040493	ENSMUSG00000097398	Platr5	2410088K16Rik	pluripotency associated transcript 5	ncRNA	0.000000	0.527363	
mm_4519.1	chr1	175631873	175632073	+	1	NA	NA	NA	-220	NM_133809	98256	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	0.030000	0.412935	-9(TGCTATTTAAAC,-,0.00)
mm_119088.1	chr14	30891308	30891508	+	1	NA	NA	NA	4932	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.010000	0.497512	
mm_158398.1	chrX	136741966	136742166	-	1	NA	NA	NA	-457	NM_019768	56397	Mm.27218	NM_019768	ENSMUSG00000031422	Morf4l2	2410017O14Rik|Mrgx|Sid393p|mKIAA0026	mortality factor 4 like 2	protein-coding	0.090000	0.701493	
mm_38055.1	chr4	134004367	134004567	-	1	NA	NA	NA	-3603	NM_026144	67422	Mm.100290	NM_026144	ENSMUSG00000012117	Dhdds	3222401G21Rik|CIT|DS|HDS|W91638	dehydrodolichyl diphosphate synthase	protein-coding	0.010000	0.477612	
mm_150246.1	chr19	34085479	34085679	+	1	NA	NA	NA	-15364	NM_023903	78753	Mm.195937	NM_023903	ENSMUSG00000056078	Lipm	4632427C23Rik|AW227514|Lipl3	lipase, family member M	protein-coding	0.000000	0.303483	
mm_123947.1	chr14	73383321	73383521	-	1	NA	NA	NA	1850	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.010000	0.373134	-30(GGGTTGTAAAGG,-,0.00)
mm_21230.1	chr2	155989113	155989313	-	1	NA	NA	NA	15214	NM_001145351	320095	Mm.442175	NM_001145351	ENSMUSG00000074646	6430550D23Rik	-	RIKEN cDNA 6430550D23 gene	protein-coding	0.005000	0.527363	
mm_4575.1	chr1	177740927	177741127	+	1	NA	NA	NA	11213	NM_027077	69428	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.000000	0.417910	
mm_81959.1	chr9	120866983	120867183	+	1	NA	NA	NA	48167	NR_040742	76402	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0.015000	0.522388	
mm_68937.1	chr7	126502232	126502432	-	1	NA	NA	NA	93	NM_001347658	233871	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.105000	0.676617	
mm_101545.1	chr11	33537342	33537542	-	1	NA	NA	NA	-23696	NM_023146	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.010000	0.388060	-30(CTCCTTAAAAGA,-,0.00)
mm_11516.1	chr2	32599612	32599812	+	1	NA	NA	NA	3	NM_001025311	50935	Mm.88831	NM_016973	ENSMUSG00000026811	St6galnac6	ST6GalNAcVI|Siat7f	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	protein-coding	0.005000	0.527363	
mm_53394.1	chr6	129587979	129588179	+	1	NA	NA	NA	-3732	NM_010654	16643	Mm.391515	NM_010654	ENSMUSG00000030165	Klrd1	CD94	killer cell lectin-like receptor, subfamily D, member 1	protein-coding	0.005000	0.447761	
mm_102087.1	chr11	52282227	52282427	-	1	NA	NA	NA	268	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.035000	0.557214	
mm_3269.1	chr1	136415246	136415446	+	1	NA	NA	NA	75	NM_026500	67997	Mm.385462	NM_026500	ENSMUSG00000026404	Ddx59	1210002B07Rik|4833411G06Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	protein-coding	0.150000	0.761194	
mm_161102.1	chr12	102129366	102129566	+	1	NA	NA	NA	47	NM_172152	238384	Mm.312448	NM_172152	ENSMUSG00000041771	Slc24a4	A930002M03Rik|AW492432|NCKX4	solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	protein-coding	0.070000	0.636816	
mm_126389.1	chr15	80189057	80189257	+	1	NA	NA	NA	15436	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.010000	0.527363	
mm_97466.1	chr11	78266289	78266489	+	1	NA	NA	NA	4635	NM_001002004	72503	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0.020000	0.442786	
mm_66984.1	chr7	63938918	63939118	-	1	NA	NA	NA	-103	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.100000	0.721393	
mm_140528.1	chr17	6745910	6746110	-	1	NA	NA	NA	36770	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.010000	0.447761	
mm_94231.1	chr11	3290374	3290574	+	1	NA	NA	NA	17	NM_019574	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.080000	0.666667	
mm_17494.1	chr2	28621224	28621424	-	1	NA	NA	NA	658	NM_008114	14582	Mm.373385	NM_008114	ENSMUSG00000026815	Gfi1b	Gfi-1B	growth factor independent 1B	protein-coding	0.005000	0.522388	
mm_28746.1	chr3	95754728	95754928	-	1	NA	NA	NA	149	NM_027931	71807	Mm.271754	NM_027931	ENSMUSG00000028107	Tars2	2610024N01Rik|AI429208|Tarsl1	threonyl-tRNA synthetase 2, mitochondrial (putative)	protein-coding	0.055000	0.577114	
mm_41248.1	chr5	88782184	88782384	+	1	NA	NA	NA	17271	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.010000	0.507463	
mm_4869.1	chr1	187742504	187742704	+	1	NA	NA	NA	133598	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.000000	0.393035	
mm_133261.1	chr16	77338206	77338406	+	1	NA	NA	NA	8978	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.015000	0.373134	
mm_96031.1	chr11	59553407	59553607	+	1	NA	NA	NA	10821	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.005000	0.363184	
mm_51683.1	chr6	86487368	86487568	+	1	NA	NA	NA	759	NR_040293	381792	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.045000	0.597015	
mm_15275.1	chr2	155236510	155236710	+	1	NA	NA	NA	2	NM_001291108	67068	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	0.110000	0.671642	
mm_61175.1	chr7	60004328	60004528	+	1	NA	NA	NA	728	NM_013670	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding	0.040000	0.631841	
mm_51713.1	chr6	86785394	86785594	+	1	NA	NA	NA	8090	NM_013471	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.000000	0.467662	
mm_1959.1	chr1	86424070	86424270	+	1	NA	NA	NA	-2159	NM_027966	71863	Mm.179627	NM_027966	ENSMUSG00000036574	1700019O17Rik	-	RIKEN cDNA 1700019O17 gene	protein-coding	0.010000	0.547264	
mm_142231.1	chr17	37480789	37480989	-	1	NA	NA	NA	2640	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.010000	0.378109	
mm_121141.1	chr14	101896303	101896503	+	1	NA	NA	NA	55780	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.030000	0.487562	
mm_14807.1	chr2	145903167	145903367	+	1	NA	NA	NA	26	NM_001141965	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.120000	0.661692	
mm_120271.1	chr14	63123857	63124057	+	1	NA	NA	NA	1495	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.030000	0.597015	
mm_956.1	chr1	57776971	57777171	+	1	NA	NA	NA	2210	NM_144882	67198	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.005000	0.378109	
mm_9836.1	chr1	184034035	184034235	-	1	NA	NA	NA	-137	NM_028516	73363	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.040000	0.547264	
mm_19709.1	chr2	103797540	103797740	-	1	NA	NA	NA	0	NM_001111291	53872	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	0.100000	0.686567	
mm_14669.1	chr2	139493835	139494035	+	1	NA	NA	NA	15	NM_175467	228677	Mm.100450	NM_175467	ENSMUSG00000039092	Sptlc3	C130053K05Rik	serine palmitoyltransferase, long chain base subunit 3	protein-coding	0.005000	0.427861	-90(ATCTTTAAAAGT,-,0.00),-89(TCTTTAAAAGTC,+,0.00)
mm_40397.1	chr5	52833979	52834179	+	1	NA	NA	NA	-56	NM_024213	52206	Mm.272568	NM_024213	ENSMUSG00000029176	Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding	0.125000	0.716418	
mm_123408.1	chr14	63543907	63544107	-	1	NA	NA	NA	-54	NM_177594	210376	Mm.441613	NM_177594	ENSMUSG00000035078	Mtmr9	9430075G12Rik|AA516943|AF073881|LIP-STYX|MTMR8|mMTMH3	myotubularin related protein 9	protein-coding	0.070000	0.582090	
mm_70683.1	chr8	14996908	14997108	+	1	NA	NA	NA	-14017	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.020000	0.597015	
mm_114333.1	chr13	60647664	60647864	+	1	NA	NA	NA	45553	NM_134062	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.005000	0.432836	
mm_102038.1	chr11	51857555	51857755	-	1	NA	NA	NA	-174	NM_199299	76901	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.030000	0.532338	-41(CCCTCTAAAGAG,-,0.00),-14(TGGTTTAAAAAG,-,0.00)
mm_3862.1	chr1	160987010	160987210	+	1	NA	NA	NA	8504	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.025000	0.582090	
mm_86238.1	chr9	120806938	120807138	-	1	NA	NA	NA	108212	NR_040742	76402	Mm.436588	NR_040742	ENSMUSG00000100146	1700020M21Rik	-	RIKEN cDNA 1700020M21 gene	ncRNA	0.015000	0.502488	
mm_70721.1	chr8	15726504	15726704	+	1	NA	NA	NA	442234	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0.015000	0.447761	
mm_157343.1	chrX	36903249	36903449	-	1	NA	NA	NA	-450	NM_029891	77286	Mm.21649	NM_029891	ENSMUSG00000044149	Nkrf	9430034D17Rik|AW124770|C80287	NF-kappaB repressing factor	protein-coding	0.045000	0.562189	84(CCATATATAAGG,-,0.00)
mm_31179.1	chr4	43506946	43507146	+	1	NA	NA	NA	20	NM_139305	230099	Mm.283682	NM_139305	ENSMUSG00000028463	Car9	CAIX|Ca9|MN/CA9	carbonic anhydrase 9	protein-coding	0.020000	0.641791	
mm_141351.1	chr17	28622346	28622546	-	1	NA	NA	NA	8	NM_016795	20815	Mm.15252	NM_016795	ENSMUSG00000004865	Srpk1	AU017960	serine/arginine-rich protein specific kinase 1	protein-coding	0.155000	0.771144	
mm_134052.1	chr16	5431693	5431893	-	1	NA	NA	NA	-175837	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.010000	0.532338	
mm_117124.1	chr13	60901258	60901458	-	1	NA	NA	NA	3489	NM_026429	116913	Mm.443229	NM_026429	ENSMUSG00000062705	Tpbpb	1600012N09Rik	trophoblast specific protein beta	protein-coding	0.000000	0.417910	
mm_75361.1	chr8	45281510	45281710	-	1	NA	NA	NA	13225	NM_008455	16621	Mm.482691	NM_008455	ENSMUSG00000109764	Klkb1	APS|Kal-3|Kal3|Klk3|PSA	kallikrein B, plasma 1	protein-coding	0.000000	0.417910	
mm_58975.1	chr7	19024313	19024513	+	1	NA	NA	NA	36	NM_026605	68188	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	0.160000	0.776119	
mm_76709.1	chr8	94601522	94601722	-	1	NA	NA	NA	104	NM_028221	102122	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	0.075000	0.522388	
mm_6787.1	chr1	84140185	84140385	-	1	NA	NA	NA	78676	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.333333	2(GCCTATTAAGGC,-,0.00)
mm_128280.1	chr15	36931586	36931786	-	1	NA	NA	NA	75716	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.000000	0.502488	
mm_81669.1	chr9	111027235	111027435	+	1	NA	NA	NA	8043	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.025000	0.522388	
mm_124887.1	chr15	10276550	10276750	+	1	NA	NA	NA	-17001	NM_001253782	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.000000	0.432836	
mm_64331.1	chr7	142283133	142283333	+	1	NA	NA	NA	-8870	NM_001199309	100043627	Mm.388589	NM_001199309	ENSMUSG00000056885	Gm4559	-	predicted gene 4559	protein-coding	0.015000	0.512438	
mm_23794.1	chr3	79628995	79629195	+	1	NA	NA	NA	16	NM_029482	75939	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	0.055000	0.592040	
mm_4249.1	chr1	171407926	171408126	+	1	NA	NA	NA	-3287	NM_001305678	22278	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	0.015000	0.567164	
mm_18937.1	chr2	76753794	76753994	-	1	NA	NA	NA	78579	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.010000	0.462687	
mm_73690.1	chr8	111562351	111562551	+	1	NA	NA	NA	24108	NM_001168623	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.015000	0.437811	
mm_115147.1	chr13	104918572	104918772	+	1	NA	NA	NA	-54779	NM_029984	77803	Mm.159995	NM_029984	ENSMUSG00000042655	Fam159b	A930021C24Rik	family with sequence similarity 159, member B	protein-coding	0.040000	0.457711	
mm_93220.1	chr10	95145708	95145908	-	1	NA	NA	NA	17	NR_131146	628062		NR_131146		Gm29684	-	predicted gene, 29684	ncRNA	0.020000	0.562189	
mm_82739.1	chr9	26791784	26791984	-	1	NA	NA	NA	14533	NM_153803	244757	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0.010000	0.527363	
mm_151544.1	chr19	59260824	59261024	+	1	NA	NA	NA	46	NM_172523	214084	Mm.268797	NM_172523	ENSMUSG00000025094	Slc18a2	1110037L13Rik|9330105E13|Vmat2	solute carrier family 18 (vesicular monoamine), member 2	protein-coding	0.075000	0.666667	
mm_82876.1	chr9	32451308	32451508	-	1	NA	NA	NA	57423	NM_001168354	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.030000	0.472637	
mm_164885.1	chr18	60584610	60584810	-	1	NA	NA	NA	7006	NM_133363	170947	Mm.159257	NM_133363	ENSMUSG00000049173	Myoz3	4833419K08Rik|Fatz-3	myozenin 3	protein-coding	0.010000	0.437811	
mm_39938.1	chr5	31726044	31726244	+	1	NA	NA	NA	28094	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.000000	0.432836	
mm_166375.1	chr5	128717349	128717549	+	1	NA	NA	NA	-18797	NM_021311	57749	Mm.272720	NM_021311	ENSMUSG00000029423	Piwil1	MIWI	piwi-like RNA-mediated gene silencing 1	protein-coding	0.015000	0.532338	
mm_160696.1	chr10	34037406	34037606	+	1	NA	NA	NA	-91	NM_001162937	692132	Mm.383415	NM_001162937	ENSMUSG00000071340	Trappc3l	Bet3l|ENSMUSG00000071340	trafficking protein particle complex 3 like	protein-coding	0.005000	0.422886	
mm_27947.1	chr3	79790243	79790443	-	1	NA	NA	NA	52319	NM_027495	70652	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.020000	0.452736	
mm_120467.1	chr14	65971702	65971902	+	1	NA	NA	NA	3319	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.010000	0.557214	
mm_57518.1	chr6	125494627	125494827	-	1	NA	NA	NA	28	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.080000	0.631841	
mm_87764.1	chr10	60292510	60292710	+	1	NA	NA	NA	8149	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.020000	0.547264	
mm_138813.1	chr17	39846643	39846843	+	1	NA	NA	NA	3746	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.100000	0.611940	
mm_72591.1	chr8	84356647	84356847	+	1	NA	NA	NA	-58617	NM_001252060	12286	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.030000	0.621891	
mm_149982.1	chr19	29126655	29126855	+	1	NA	NA	NA	-8524	NR_029778	724062		NR_029778	ENSMUSG00000065556	Mir101b	Mirn101b|mir-101b	microRNA 101b	ncRNA	0.015000	0.477612	
mm_163738.1	chr13	119695761	119695961	-	1	NA	NA	NA	5510	NM_001291439	208715	Mm.61526	NM_145942	ENSMUSG00000093930	Hmgcs1	B130032C06Rik	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	protein-coding	0.015000	0.532338	
mm_127650.1	chr15	102489655	102489855	+	1	NA	NA	NA	19123	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.000000	0.338308	
mm_162569.1	chr1	173673533	173673733	+	1	NA	NA	NA	-47	NM_001162938	100033459	Mm.303377	NM_001162938	ENSMUSG00000066677	Ifi208	9830148g24rik|E430029J22Rik|Pydc3|Pyr-rv1	interferon activated gene 208	protein-coding	0.010000	0.452736	
mm_50913.1	chr6	57582743	57582943	+	1	NA	NA	NA	1851	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.000000	0.323383	
mm_50803.1	chr6	54272695	54272895	+	1	NA	NA	NA	-27	NM_023543	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.010000	0.582090	
mm_50816.1	chr6	54429541	54429741	+	1	NA	NA	NA	580	NR_033635	100042056	Mm.448157	NM_198118	ENSMUSG00000073067	9130019P16Rik	6430501H15Rik|OTTMUSG00000023151	RIKEN cDNA 9130019P16 gene	ncRNA	0.125000	0.761194	
mm_79774.1	chr9	62838759	62838959	+	1	NA	NA	NA	72	NM_001033175	76524	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.165000	0.796020	
mm_99922.1	chr11	110479280	110479480	+	1	NA	NA	NA	80258	NM_011943	26399	Mm.14487	NM_011943	ENSMUSG00000020623	Map2k6	MEK6|MKK6|Prkmk6|SAPKK3	mitogen-activated protein kinase kinase 6	protein-coding	0.015000	0.492537	
mm_109062.1	chr12	104344024	104344224	+	1	NA	NA	NA	5638	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.010000	0.502488	
mm_86406.1	chr9	123986615	123986815	-	1	NA	NA	NA	-8307	NM_007718	12770	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0.010000	0.492537	
mm_104344.1	chr11	94242646	94242846	-	1	NA	NA	NA	-167	NM_181819	278507	Mm.342216	NM_181819	ENSMUSG00000044177	Wfikkn2	2610304F08Rik|AY100450|Gasp1|WFIKKNRP	WAP, follistatin/kazal, immunoglobulin, kunitz and netrin domain containing 2	protein-coding	0.015000	0.606965	
mm_10235.1	chr2	6582833	6583033	+	1	NA	NA	NA	138729	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.000000	0.422886	
mm_126264.1	chr15	79108984	79109184	+	1	NA	NA	NA	101	NM_177461	27008	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	0.160000	0.815920	
mm_13325.1	chr2	102781959	102782159	+	1	NA	NA	NA	75621	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.000000	0.447761	84(GACCATAAAGGC,-,0.00)
mm_56546.1	chr6	99878332	99878532	-	1	NA	NA	NA	-152040	NM_001170419	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.075000	0.611940	
mm_3603.1	chr1	151603475	151603675	+	1	NA	NA	NA	32202	NM_022018	63913	Mm.157700	NM_022018	ENSMUSG00000026483	Fam129a	AI256368|AU019833|Niban	family with sequence similarity 129, member A	protein-coding	0.010000	0.373134	
mm_112665.1	chr13	16027053	16027253	+	1	NA	NA	NA	15302	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.348259	
mm_68988.1	chr7	126594832	126595032	-	1	NA	NA	NA	-22	NM_145636	246779	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	0.020000	0.587065	
mm_147488.1	chr18	47333199	47333399	-	1	NA	NA	NA	35569	NM_018744	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.015000	0.472637	
mm_165136.1	chr2	11332505	11332705	-	1	NA	NA	NA	-6884	NR_040369	100503147	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	OTTMUSG00000011311	predicted gene 13293	ncRNA	0.000000	0.477612	
mm_16834.1	chr2	11498290	11498490	-	1	NA	NA	NA	3700	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.000000	0.487562	
mm_152526.1	chr19	11323994	11324194	-	1	NA	NA	NA	10601	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.005000	0.328358	
mm_133761.1	chr16	94502367	94502567	+	1	NA	NA	NA	24162	NM_007834	13185	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	Down syndrome critical region gene 3	protein-coding	0.015000	0.462687	
mm_126842.1	chr15	89059984	89060184	+	1	NA	NA	NA	358	NM_001002005	406218	Mm.483059	NM_001002005	ENSMUSG00000058441	Panx2	-	pannexin 2	protein-coding	0.150000	0.796020	
mm_22032.1	chr2	168119082	168119282	-	1	NA	NA	NA	35331	NR_040327	77017	Mm.407822	NR_040327	ENSMUSG00000087648	E130018N17Rik	-	RIKEN cDNA E130018N17 gene	ncRNA	0.050000	0.646766	
mm_162782.1	chr10	69980241	69980441	+	1	NA	NA	NA	54809	NM_009670	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.010000	0.437811	-77(CCTTTTAGATCA,+,0.00),42(GCACATAAAAAG,-,0.00),58(CTTTTAAAACTG,+,0.00)
mm_23603.1	chr3	65109417	65109617	+	1	NA	NA	NA	149	NM_010597	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.025000	0.572139	
mm_45998.1	chr5	90640321	90640521	-	1	NA	NA	NA	106	NM_028478	73246	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.045000	0.562189	
mm_15438.1	chr2	157283484	157283684	+	1	NA	NA	NA	-4035	NM_001039557	629499	Mm.384235	NM_001039557	ENSMUSG00000074627	Mroh8	4922505G16Rik	maestro heat-like repeat family member 8	protein-coding	0.025000	0.562189	
mm_50692.1	chr6	51589899	51590099	+	1	NA	NA	NA	45476	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.005000	0.417910	
mm_96202.1	chr11	62076960	62077160	+	1	NA	NA	NA	36	NM_001029936	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.120000	0.696517	
mm_147875.1	chr18	64504903	64505103	-	1	NA	NA	NA	11554	NM_027350	70223	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0.020000	0.532338	
mm_25453.1	chr3	108383793	108383993	+	1	NA	NA	NA	55	NM_019976	56742	Mm.389499	NM_019976	ENSMUSG00000068744	Psrc1	5430413I02Rik|AL033312|Dda3	proline/serine-rich coiled-coil 1	protein-coding	0.070000	0.592040	
mm_114949.1	chr13	96748197	96748397	+	1	NA	NA	NA	-77361	NM_008255	15357	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0.095000	0.696517	
mm_155372.1	chrX	71555933	71556133	+	1	NA	NA	NA	116	NM_001293625	15354	Mm.336087	NM_008253	ENSMUSG00000015217	Hmgb3	Hmg2a|Hmg4	high mobility group box 3	protein-coding	0.150000	0.731343	
mm_35.1	chr1	6266986	6267186	+	1	NA	NA	NA	52424	NM_009826	12421	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	0.010000	0.363184	
mm_44602.1	chr5	25100505	25100705	-	1	NA	NA	NA	37	NM_145401	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.040000	0.577114	
mm_90998.1	chr10	14544893	14545093	-	1	NA	NA	NA	43	NM_001002268	215798	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.085000	0.611940	
mm_72318.1	chr8	78330657	78330857	+	1	NA	NA	NA	105895	NM_138944	18997	Mm.234261	NM_138944	ENSMUSG00000031688	Pou4f2	Brn-3.2|Brn-3b|Brn3b|Pou4f-rs1|mBrn3-3R	POU domain, class 4, transcription factor 2	protein-coding	0.000000	0.343284	
mm_117379.1	chr13	72839166	72839366	-	1	NA	NA	NA	-22503	NR_046196	78446	Mm.244082	NR_046196		D730050B12Rik	-	RIKEN cDNA D730050B12 gene	ncRNA	0.005000	0.477612	
mm_68797.1	chr7	124655204	124655404	-	1	NA	NA	NA	53631	NR_045907	73076	Mm.417827	NR_045907	ENSMUSG00000086254	3100003L05Rik	-	RIKEN cDNA 3100003L05 gene	ncRNA	0.000000	0.542289	
mm_7463.1	chr1	120477186	120477386	-	1	NA	NA	NA	27798	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.010000	0.447761	-49(TCTTTTAGAGTC,+,0.00)
mm_39385.1	chr5	13125524	13125724	+	1	NA	NA	NA	-271160	NM_001243072	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.025000	0.537313	
mm_86024.1	chr9	112235826	112236026	-	1	NA	NA	NA	-1085	NM_001177619	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.020000	0.557214	
mm_27490.1	chr3	54807660	54807860	-	1	NA	NA	NA	31	NM_133231	170767	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	0.140000	0.726368	
mm_172462.1	chr7	42592446	42592646	-	1	NA	NA	NA	50058	NM_001242388	208111	Mm.387841	NM_001034857	ENSMUSG00000074158	Zfp976	9830147E19Rik|C330019L16Rik	zinc finger protein 976	protein-coding	0.025000	0.572139	
mm_145607.1	chr18	61096609	61096809	+	1	NA	NA	NA	-8863	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.040000	0.472637	
mm_72409.1	chr8	81775703	81775903	+	1	NA	NA	NA	433241	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.005000	0.353234	
mm_14002.1	chr2	122000561	122000761	+	1	NA	NA	NA	-27919	NM_144545	78655	Mm.458184	NM_144545	ENSMUSG00000027236	Eif3j1	1810016I04Rik|2700079K05Rik|AA409117|AA409446|C78575|Eif3j|Eif3j-1|Eif3j-2|Eif3j2|Eif3s1|eIF-3-alpha-A|eIF-3-alpha-B|eIF3-alpha|eIF3-p35|eIF3j-A|eIF3j-B	eukaryotic translation initiation factor 3, subunit J1	protein-coding	0.005000	0.383085	
mm_136005.1	chr16	75766678	75766878	-	1	NA	NA	NA	40	NR_027492	110920	Mm.26704	NM_030201	ENSMUSG00000032932	Hspa13	1600002I10Rik|AV006182|B230217N24Rik|Stch	heat shock protein 70 family, member 13	protein-coding	0.090000	0.606965	
mm_98529.1	chr11	94993483	94993683	+	1	NA	NA	NA	2371	NM_172261	217124	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.000000	0.552239	30(TCTTATATGGTC,+,0.00)
mm_36687.1	chr4	96553541	96553741	-	1	NA	NA	NA	10	NM_010008	13110	Mm.98200	NM_010008	ENSMUSG00000052914	Cyp2j6	-	cytochrome P450, family 2, subfamily j, polypeptide 6	protein-coding	0.025000	0.557214	
mm_137698.1	chr17	29047117	29047317	+	1	NA	NA	NA	14557	NR_036613	20383	Mm.6787	NM_013663	ENSMUSG00000071172	Srsf3	AL024116|Sfrs3|X16	serine/arginine-rich splicing factor 3	protein-coding	0.005000	0.447761	
mm_95050.1	chr11	32297448	32297648	+	1	NA	NA	NA	1056	NM_001083955	110257	Mm.196110	NM_001083955	ENSMUSG00000069917	Hba-a2	-	hemoglobin alpha, adult chain 2	protein-coding	0.010000	0.507463	
mm_162398.1	chr1	82796156	82796356	-	1	NA	NA	NA	-27800	NM_025453	66261	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.040000	0.562189	
mm_16585.1	chr2	3718002	3718202	-	1	NA	NA	NA	4644	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.010000	0.497512	-21(ACTTTTAGAGAG,+,0.00)
mm_74015.1	chr8	121542003	121542203	+	1	NA	NA	NA	-149	NM_029597	76405	Mm.165697	NM_029597	ENSMUSG00000031809	1700018B08Rik	1700084O22Rik	RIKEN cDNA 1700018B08 gene	protein-coding	0.060000	0.577114	
mm_134993.1	chr16	32163305	32163505	-	1	NA	NA	NA	2071	NM_146069	224109	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.000000	0.507463	
mm_44395.1	chr5	17835579	17835779	-	1	NA	NA	NA	217	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.383085	-82(TTTTTTAAAGCT,+,0.00)
mm_19668.1	chr2	103372598	103372798	-	1	NA	NA	NA	66	NR_040332	319854	Mm.403818	NR_040332	ENSMUSG00000087278	A930006I01Rik	-	RIKEN cDNA A930006I01 gene	ncRNA	0.020000	0.497512	
mm_117398.1	chr13	73689055	73689255	-	1	NA	NA	NA	-10671	NM_027780	71390	Mm.105251	NM_027780		Slc6a19os	5430425J12Rik	solute carrier family 6 (neurotransmitter transporter), member 19, opposite strand	protein-coding	0.010000	0.562189	
mm_382.1	chr1	34053573	34053773	+	1	NA	NA	NA	41848	NM_134448	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.020000	0.472637	
mm_126844.1	chr15	89075982	89076182	+	1	NA	NA	NA	18	NM_026485	67976	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	0.180000	0.835821	
mm_122470.1	chr14	45530167	45530367	-	1	NA	NA	NA	-202	NM_146054	218952	Mm.210018	NM_146054	ENSMUSG00000037712	Fermt2	AA960555|Kindlin-2|Mig2|Plekhc1	fermitin family member 2	protein-coding	0.125000	0.756219	-4(TTCCATAAAAGG,-,0.00),-2(CCATAAAAGGGC,+,0.00)
mm_16439.1	chr2	180397221	180397421	+	1	NA	NA	NA	-1058	NR_029901	723954		NR_029901	ENSMUSG00000065460	Mir133a-2	Mirn133a-2|mir-133a-2	microRNA 133a-2	ncRNA	0.015000	0.552239	
mm_146136.1	chr18	74714690	74714890	+	1	NA	NA	NA	63665	NR_028560	100217466		NR_028560		Scarna17	MBII-119	small Cajal body-specific RNA 17	ncRNA	0.010000	0.552239	
mm_73078.1	chr8	94460678	94460878	+	1	NA	NA	NA	-11985	NM_001033207	434341	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	0.000000	0.343284	
mm_101200.1	chr11	19018359	19018559	-	1	NA	NA	NA	510	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.040000	0.462687	10(GCTTTTATGCTC,+,0.00)
mm_32967.1	chr4	120032407	120032607	+	1	NA	NA	NA	-128699	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.075000	0.736318	
mm_90294.1	chr10	125387864	125388064	+	1	NA	NA	NA	-59429	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.025000	0.462687	-24(GGACTTAAAAGC,-,0.00)
mm_69777.1	chr7	141017496	141017696	-	1	NA	NA	NA	-704	NM_001033632	213002	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.020000	0.462687	
mm_5339.1	chr1	24100146	24100346	-	1	NA	NA	NA	95	NM_026604	68187	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	0.145000	0.761194	
mm_39002.1	chr4	151861668	151861868	-	1	NA	NA	NA	0	NM_001081557	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.155000	0.776119	
mm_20374.1	chr2	128429240	128429440	-	1	NA	NA	NA	11	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.020000	0.452736	
mm_15577.1	chr2	158667059	158667259	+	1	NA	NA	NA	24	NM_001159662	228852	Mm.150540	NM_153089	ENSMUSG00000037754	Ppp1r16b	ANKRD4|C130078N17Rik|TIMAP|Wdt4	protein phosphatase 1, regulatory (inhibitor) subunit 16B	protein-coding	0.095000	0.721393	
mm_118238.1	chr13	111748333	111748533	-	1	NA	NA	NA	60550	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.005000	0.328358	78(GCGTTTTTAAAG,-,0.00),80(GTTTTTAAAGTT,+,0.00)
mm_49548.1	chr6	30509769	30509969	+	1	NA	NA	NA	20	NM_027073	75647	Mm.46117	NM_027073	ENSMUSG00000029784	Ssmem1	1700016K02Rik|1700025E21Rik	serine-rich single-pass membrane protein 1	protein-coding	0.055000	0.547264	
mm_152224.1	chr19	8663229	8663429	-	1	NA	NA	NA	6	NR_045314	402757	Mm.150255	NR_045314		9830166K06Rik	-	RIKEN cDNA 9830166K06 gene	ncRNA	0.000000	0.517413	
mm_156135.1	chrX	123103950	123104150	+	1	NA	NA	NA	527	NM_028426	73061	Mm.292979	NM_028426	ENSMUSG00000079450	Cldn34c1	3110007F17Rik	claudin 34C1	protein-coding	0.020000	0.487562	-80(AGCCTTAAAAGG,-,0.00),-79(GCCTTAAAAGGG,+,0.00),-78(CCTTAAAAGGGC,+,0.00)
mm_21709.1	chr2	164593435	164593635	-	1	NA	NA	NA	36	NM_029325	75526	Mm.159533	NM_029325	ENSMUSG00000017733	Eppin	1700024E17Rik|Spinlw1	epididymal peptidase inhibitor	protein-coding	0.015000	0.517413	
mm_82708.1	chr9	24412372	24412572	-	1	NA	NA	NA	90668	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.005000	0.417910	3(CCCTTTAAAAGT,-,0.00),4(CCTTTAAAAGTT,+,0.00)
mm_32464.1	chr4	107468527	107468727	+	1	NA	NA	NA	33908	NM_147221	230587	Mm.331757	NM_147221	ENSMUSG00000034762	Glis1	Gli5|Gli6|GliH1	GLIS family zinc finger 1	protein-coding	0.015000	0.527363	
mm_70079.1	chr7	142653594	142653794	-	1	NA	NA	NA	1302	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.015000	0.547264	
mm_112318.1	chr12	115024372	115024572	-	1	NA	NA	NA	-510778	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.457711	
mm_91727.1	chr10	45048601	45048801	-	1	NA	NA	NA	-18513	NM_011156	19072	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.025000	0.497512	
mm_138037.1	chr17	33919730	33919930	+	1	NA	NA	NA	352	NM_009318	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.085000	0.646766	
mm_19100.1	chr2	79454164	79454364	-	1	NA	NA	NA	2372	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.070000	0.621891	
mm_156938.1	chrX	169916006	169916206	+	1	NA	NA	NA	36487	NM_001290505	17318	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	0.025000	0.532338	
mm_54616.1	chr6	38355426	38355626	-	1	NA	NA	NA	-923	NM_028421	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.030000	0.457711	
mm_23414.1	chr3	58525730	58525930	+	1	NA	NA	NA	9	NM_001005509	229317	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	0.125000	0.701493	
mm_54727.1	chr6	40585660	40585860	-	1	NA	NA	NA	45	NM_021364	23845	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	0.020000	0.482587	
mm_49341.1	chr6	21516472	21516672	+	1	NA	NA	NA	300463	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.005000	0.388060	
mm_83036.1	chr9	37255598	37255798	-	1	NA	NA	NA	40	NM_020258	56857	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.010000	0.492537	
mm_77966.1	chr9	7767687	7767887	+	1	NA	NA	NA	3710	NM_133739	71929	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0.005000	0.502488	
mm_131617.1	chr16	19760536	19760736	+	1	NA	NA	NA	402	NM_001159407	108105	Mm.33935	NM_054052	ENSMUSG00000022686	B3gnt5	beta3GnT5	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5	protein-coding	0.045000	0.497512	-83(TGCTTTTAAAAC,-,0.00),-82(GCTTTTAAAACG,+,0.00),-81(CTTTTAAAACGA,+,0.00)
mm_152259.1	chr19	8786185	8786385	-	1	NA	NA	NA	31	NM_146092	225895	Mm.220886	NM_146092	ENSMUSG00000003680	Taf6l	2810417N14Rik|BB223262|C530024J06Rik|Paf65a	TATA-box binding protein associated factor 6 like	protein-coding	0.065000	0.646766	
mm_151205.1	chr19	53547835	53548035	+	1	NA	NA	NA	18617	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.025000	0.512438	
mm_45757.1	chr5	86804699	86804899	-	1	NA	NA	NA	309	NM_177680	231386	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.090000	0.631841	
mm_60836.1	chr7	45718034	45718234	+	1	NA	NA	NA	63	NM_009077	19899	Mm.3459	NM_009077	ENSMUSG00000059070	Rpl18	L18|Rpl18a	ribosomal protein L18	protein-coding	0.120000	0.686567	
mm_32451.1	chr4	107367642	107367842	+	1	NA	NA	NA	-42	NM_028355	72787	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0.050000	0.532338	
mm_158361.1	chrX	134601411	134601611	-	1	NA	NA	NA	332	NM_001313717	56258	Mm.315909	NM_019868	ENSMUSG00000045427	Hnrnph2	DXHXS1271E|Ftp-3|Ftp3|H'|HNRNP|Hnrph2	heterogeneous nuclear ribonucleoprotein H2	protein-coding	0.075000	0.631841	
mm_74579.1	chr8	11231350	11231550	-	1	NA	NA	NA	-81355	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.025000	0.487562	
mm_95260.1	chr11	44675569	44675769	+	1	NA	NA	NA	57569	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.005000	0.373134	
mm_65144.1	chr7	19577952	19578152	-	1	NA	NA	NA	765	NM_022409	63872	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0.015000	0.572139	
mm_48073.1	chr5	136581760	136581960	-	1	NA	NA	NA	-14370	NM_001291238	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.030000	0.467662	
mm_127827.1	chr15	6435244	6435444	-	1	NA	NA	NA	-9989	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.015000	0.537313	
mm_2002.1	chr1	87126945	87127145	+	1	NA	NA	NA	2037	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.050000	0.562189	
mm_10447.1	chr2	14273364	14273564	+	1	NA	NA	NA	12461	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.005000	0.447761	
mm_8468.1	chr1	153332822	153333022	-	1	NA	NA	NA	-136	NM_010683	226519	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	0.115000	0.771144	
mm_167824.1	chr9	124423178	124423378	+	1	NA	NA	NA	27	NR_027950	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.120000	0.706468	
mm_6411.1	chr1	72874332	72874532	-	1	NA	NA	NA	433	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.040000	0.527363	-74(CCTTTTCAAGGC,+,0.00)
mm_122717.1	chr14	52269085	52269285	-	1	NA	NA	NA	-9961	NM_023434	268741	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	0.015000	0.432836	
mm_6912.1	chr1	84839331	84839531	-	1	NA	NA	NA	-127	NM_133975	14897	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.120000	0.696517	
mm_136669.1	chr17	6106731	6106931	+	1	NA	NA	NA	1	NM_001103181	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.145000	0.810945	
mm_156265.1	chrX	136831930	136832130	+	1	NA	NA	NA	9284	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.030000	0.557214	-30(TCCTTTATGGGG,+,0.00)
mm_128529.1	chr15	54847264	54847464	-	1	NA	NA	NA	72782	NM_015744	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.005000	0.417910	
mm_1173.1	chr1	60977818	60978018	+	1	NA	NA	NA	4	NM_017480	54167	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0.015000	0.457711	
mm_94143.1	chr10	128737483	128737683	-	1	NA	NA	NA	6473	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.045000	0.611940	
mm_110940.1	chr12	76597505	76597705	-	1	NA	NA	NA	-49680	NR_046044	100504549	Mm.440349	NR_046044		AI463170	-	expressed sequence AI463170	ncRNA	0.020000	0.542289	
mm_70177.1	chr7	143713500	143713700	-	1	NA	NA	NA	26760	NM_001199227	79196	Mm.21199	NM_024289	ENSMUSG00000037606	Osbpl5	1110006M06Rik|AI462538|ORP5|Obph1|Osbp2	oxysterol binding protein-like 5	protein-coding	0.015000	0.587065	-32(GCCTTTATAGTG,+,0.00)
mm_128251.1	chr15	36770515	36770715	-	1	NA	NA	NA	20317	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.010000	0.482587	
mm_68015.1	chr7	100954945	100955145	-	1	NA	NA	NA	9321	NM_183168	233571	Mm.235193	NM_183168	ENSMUSG00000048779	P2ry6	2010204J23Rik|P2Y6	pyrimidinergic receptor P2Y, G-protein coupled, 6	protein-coding	0.010000	0.363184	
mm_7965.1	chr1	133930074	133930274	-	1	NA	NA	NA	-8773	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.015000	0.502488	
mm_103180.1	chr11	70459910	70460110	-	1	NA	NA	NA	-26	NM_023158	66102	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.040000	0.557214	
mm_142666.1	chr17	47728735	47728935	-	1	NA	NA	NA	1993	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.005000	0.482587	
mm_80303.1	chr9	73192406	73192606	+	1	NA	NA	NA	79037	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0.025000	0.582090	
mm_114100.1	chr13	54726697	54726897	+	1	NA	NA	NA	23077	NM_001316710	26913	Mm.41812	NM_012014	ENSMUSG00000069227	Gprin1	GRIN1|Z16	G protein-regulated inducer of neurite outgrowth 1	protein-coding	0.045000	0.577114	
mm_98022.1	chr11	84957726	84957926	+	1	NA	NA	NA	72	NM_007607	12351	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	0.060000	0.621891	
mm_116223.1	chr13	32940504	32940704	-	1	NA	NA	NA	-24909	NM_011454	20708	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	0.000000	0.512438	
mm_164607.1	chr17	30794100	30794300	+	1	NA	NA	NA	-107667	NM_021332	14652	Mm.390969	NM_021332	ENSMUSG00000024027	Glp1r	GLP-1R|GLP1Rc	glucagon-like peptide 1 receptor	protein-coding	0.020000	0.417910	-28(TCCCTTTTAAGC,-,0.00),-26(CCTTTTAAGCTG,+,0.00)
mm_14528.1	chr2	132724196	132724396	+	1	NA	NA	NA	34013	NM_028637	73747	Mm.284114	NM_028637	ENSMUSG00000044991	1110034G24Rik	-	RIKEN cDNA 1110034G24 gene	protein-coding	0.025000	0.497512	
mm_29619.1	chr3	121343232	121343432	-	1	NA	NA	NA	51515	NM_024178	66789	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0.025000	0.482587	
mm_70843.1	chr8	23446477	23446677	+	1	NA	NA	NA	35075	NM_013834	20377	Mm.281691	NM_013834	ENSMUSG00000031548	Sfrp1	2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1	secreted frizzled-related protein 1	protein-coding	0.025000	0.582090	
mm_105644.1	chr11	107131419	107131619	-	1	NA	NA	NA	403	NM_176850	207165	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0.125000	0.741294	
mm_130855.1	chr15	102118861	102119061	-	1	NA	NA	NA	15973	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.020000	0.587065	
mm_59610.1	chr7	28142351	28142551	+	1	NA	NA	NA	12985	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.502488	
mm_8336.1	chr1	150101152	150101352	-	1	NA	NA	NA	1221	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.472637	
mm_31687.1	chr4	62313942	62314142	+	1	NA	NA	NA	22495	NM_001290518	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.010000	0.477612	
mm_89444.1	chr10	92825624	92825824	+	1	NA	NA	NA	-103306	NM_008682	17997	Mm.2998	NM_008682	ENSMUSG00000019988	Nedd1	-	neural precursor cell expressed, developmentally down-regulated gene 1	protein-coding	0.000000	0.432836	
mm_121626.1	chr14	8317520	8317720	-	1	NA	NA	NA	-7844	NM_183187	268709	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0.085000	0.681592	
mm_146449.1	chr18	86394698	86394898	+	1	NA	NA	NA	-154	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.015000	0.492537	-78(ACCTTTAAAAAG,-,0.00),-76(CTTTAAAAAGTG,+,0.00)
mm_20993.1	chr2	152332132	152332332	-	1	NA	NA	NA	193	NM_001083921	24105	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0.085000	0.661692	
mm_80332.1	chr9	75037745	75037945	+	1	NA	NA	NA	113	NM_021548	59046	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	0.120000	0.736318	
mm_132605.1	chr16	38562773	38562973	+	1	NA	NA	NA	59	NM_026407	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.080000	0.636816	
mm_168691.1	chr11	97114187	97114387	-	1	NA	NA	NA	1044	NM_019507	57765	Mm.94519	NM_019507	ENSMUSG00000001444	Tbx21	TBT1|Tbet|Tblym	T-box 21	protein-coding	0.035000	0.557214	
mm_86556.1	chr10	11149294	11149494	+	1	NA	NA	NA	-36	NM_001077707	268281	Mm.133101	NM_172937	ENSMUSG00000090112	Shprh	2610103K11Rik|AA450458|AU024614|BC006883|D230017O13Rik|E130018M05	SNF2 histone linker PHD RING helicase	protein-coding	0.100000	0.671642	
mm_134625.1	chr16	21650017	21650217	-	1	NA	NA	NA	44548	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.000000	0.363184	
mm_149162.1	chr19	9018166	9018366	+	1	NA	NA	NA	362	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.020000	0.477612	
mm_109750.1	chr12	117657982	117658182	+	1	NA	NA	NA	141603	NM_175930	217944	Mm.227642	NM_175930	ENSMUSG00000041992	Rapgef5	4932413M22|C86120|D030051B22Rik|GFR|Mrgef|mKIAA0277|mmr-gef	Rap guanine nucleotide exchange factor (GEF) 5	protein-coding	0.020000	0.398010	
mm_103068.1	chr11	69858630	69858830	-	1	NA	NA	NA	0	NM_031880	83813	Mm.28874	NM_031880	ENSMUSG00000001583	Tnk1	Kos1|Tnk1a|Tnk1b	tyrosine kinase, non-receptor, 1	protein-coding	0.065000	0.666667	
mm_90020.1	chr10	115384835	115385035	+	1	NA	NA	NA	-24	NM_001033261	216345	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0.125000	0.681592	
mm_11223.1	chr2	29772503	29772703	+	1	NA	NA	NA	11075	NM_001177392	433416	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	OTTMUSG00000012686	predicted gene 13547	protein-coding	0.010000	0.482587	
mm_89375.1	chr10	88826766	88826966	+	1	NA	NA	NA	-52	NM_175158	70683	Mm.29631	NM_175158	ENSMUSG00000004356	Utp20	3830408P06Rik|AA617408|Drim|mDRIM|mDRIN	UTP20 small subunit processome component	protein-coding	0.055000	0.517413	
mm_81693.1	chr9	111174115	111174315	+	1	NA	NA	NA	56104	NM_001164838	71268	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.020000	0.487562	
mm_53318.1	chr6	129187214	129187414	+	1	NA	NA	NA	6699	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.000000	0.323383	
mm_48876.1	chr5	150665483	150665683	-	1	NA	NA	NA	29	NM_201369	381695	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|zag1	NEDD4 binding protein 2-like 2	protein-coding	0.100000	0.582090	
mm_59556.1	chr7	28075220	28075420	+	1	NA	NA	NA	4084	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.030000	0.522388	
mm_92290.1	chr10	71344841	71345041	-	1	NA	NA	NA	-92	NM_134007	52637	Mm.254114	NM_134007	ENSMUSG00000037710	Cisd1	AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding	0.135000	0.701493	
mm_43045.1	chr5	124075260	124075460	+	1	NA	NA	NA	20438	NM_019875	56325	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.010000	0.482587	86(TTCTTTTAAAGA,-,0.00),87(TCTTTTAAAGAA,+,0.00)
mm_162704.1	chr10	22704548	22704748	+	1	NA	NA	NA	24784	NR_106123	102465768		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	0.015000	0.462687	
mm_148206.1	chr18	79519659	79519859	-	1	NA	NA	NA	-410368	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.005000	0.258706	
mm_34429.1	chr4	145585049	145585249	+	1	NA	NA	NA	-51	NM_001324416	433801	Mm.276881	NM_001013808	ENSMUSG00000078502	Gm13212	OTTMUSG00000010965	predicted gene 13212	protein-coding	0.030000	0.482587	
mm_40295.1	chr5	43515673	43515873	+	1	NA	NA	NA	204	NM_001135172	109323	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	0.035000	0.447761	
mm_49084.1	chr6	6863171	6863371	+	1	NA	NA	NA	-63	NM_010057	13396	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding	0.020000	0.432836	
mm_69609.1	chr7	137194781	137194981	-	1	NA	NA	NA	-39802	NR_045885	100038555	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	ENSMUSG00000073800	predicted gene 10578	ncRNA	0.040000	0.378109	
mm_95607.1	chr11	53430359	53430559	+	1	NA	NA	NA	372	NM_025352	22272	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	0.095000	0.621891	
mm_94507.1	chr11	7201878	7202078	+	1	NA	NA	NA	4191	NM_008341	16006	Mm.21300	NM_008341	ENSMUSG00000020429	Igfbp1	-	insulin-like growth factor binding protein 1	protein-coding	0.005000	0.417910	
mm_40003.1	chr5	32863638	32863838	+	1	NA	NA	NA	17	NM_001170567	277854	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	0.090000	0.701493	
mm_136958.1	chr17	15396179	15396379	+	1	NA	NA	NA	33	NM_024203	67544	Mm.35039	NM_024203	ENSMUSG00000014763	Fam120b	4932442K08Rik|AW049283|AW413338|CCPG|Pgcc1|mKIAA1838	family with sequence similarity 120, member B	protein-coding	0.050000	0.547264	
mm_54018.1	chr6	8647687	8647887	-	1	NA	NA	NA	110671	NM_001252266	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.005000	0.487562	
mm_130067.1	chr15	89196368	89196568	-	1	NA	NA	NA	6	NM_027081	69440	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	0.110000	0.716418	
mm_89597.1	chr10	95970819	95971019	+	1	NA	NA	NA	30256	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.000000	0.388060	
mm_164301.1	chr15	103897282	103897482	+	1	NA	NA	NA	1918	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.025000	0.383085	
mm_113553.1	chr13	38151166	38151366	+	1	NA	NA	NA	-28	NM_023842	109620	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding	0.100000	0.751244	
mm_108559.1	chr12	84640871	84641071	+	1	NA	NA	NA	-48	NM_001168589	432677	Mm.311913	NM_001033776	ENSMUSG00000071235	Vrtn	7420416P09Rik	vertebrae development associated	protein-coding	0.025000	0.567164	
mm_48597.1	chr5	144026502	144026702	-	1	NA	NA	NA	-11749	NM_177682	231874	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0.020000	0.437811	-33(GACTATATAAGG,-,0.00)
mm_153109.1	chr19	32956927	32957127	-	1	NA	NA	NA	199450	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.045000	0.577114	
mm_61837.1	chr7	88288656	88288856	+	1	NA	NA	NA	10671	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.005000	0.462687	-79(CTCTTTTAAAAC,-,0.00),-78(TCTTTTAAAACC,+,0.00),-77(CTTTTAAAACCA,+,0.00)
mm_25166.1	chr3	103065283	103065483	+	1	NA	NA	NA	7098	NM_010937	18176	Mm.400954	NM_010937	ENSMUSG00000027852	Nras	AV095280|N-ras	neuroblastoma ras oncogene	protein-coding	0.020000	0.462687	
mm_106504.1	chr11	120437594	120437794	-	1	NA	NA	NA	6	NM_001195023	217365	Mm.309520	NM_199469	ENSMUSG00000039703	Nploc4	AK129375|Npl4|mKIAA1499	NPL4 homolog, ubiquitin recognition factor	protein-coding	0.155000	0.761194	
mm_10427.1	chr2	13582680	13582880	+	1	NA	NA	NA	8469	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.005000	0.263682	-46(CTTTTTAAAGTA,+,0.00)
mm_93347.1	chr10	100487201	100487401	-	1	NA	NA	NA	46	NM_001033332	237500	Mm.296805	NM_001033332	ENSMUSG00000036676	Tmtc3	9130014E20Rik|B130008E12Rik|mSmile	transmembrane and tetratricopeptide repeat containing 3	protein-coding	0.090000	0.661692	
mm_82302.1	chr9	7864958	7865158	-	1	NA	NA	NA	8112	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.015000	0.527363	71(CCTTTTATATCT,+,0.00)
mm_131853.1	chr16	23067598	23067798	+	1	NA	NA	NA	9398	NM_001102412	16644	Mm.2160	NM_023125	ENSMUSG00000022875	Kng1	Kng	kininogen 1	protein-coding	0.015000	0.427861	
mm_38135.1	chr4	134704004	134704204	-	1	NA	NA	NA	186	NM_207237	230815	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.110000	0.731343	
mm_43585.1	chr5	137747422	137747622	+	1	NA	NA	NA	1553	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.040000	0.646766	
mm_134291.1	chr16	14226421	14226621	-	1	NA	NA	NA	63246	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.030000	0.547264	
mm_158543.1	chrX	145348838	145349038	-	1	NA	NA	NA	-44	NM_178358	237091	Mm.135547	NM_178358	ENSMUSG00000041700	Lhfpl1	Lhfp	lipoma HMGIC fusion partner-like 1	protein-coding	0.005000	0.472637	
mm_116394.1	chr13	41216981	41217181	-	1	NA	NA	NA	3081	NM_001311121	54326	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0.005000	0.393035	
mm_44076.1	chr5	149006857	149007057	+	1	NA	NA	NA	-5	NR_040429	100503307	Mm.188008	NR_040429	ENSMUSG00000086610	Gm15408	OTTMUSG00000021225	predicted gene 15408	ncRNA	0.065000	0.621891	
mm_64936.1	chr7	16309255	16309455	-	1	NA	NA	NA	-228	NM_133234	170770	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.045000	0.651741	
mm_57533.1	chr6	126535423	126535623	-	1	NA	NA	NA	32	NM_145983	16493	Mm.222831	NM_145983	ENSMUSG00000045534	Kcna5	Kv1.5	potassium voltage-gated channel, shaker-related subfamily, member 5	protein-coding	0.025000	0.651741	
mm_23413.1	chr3	58525021	58525221	+	1	NA	NA	NA	-700	NM_001005509	229317	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	0.050000	0.522388	
mm_127943.1	chr15	10714495	10714695	-	1	NA	NA	NA	36	NM_001166408	75646	Mm.212395	NM_030690	ENSMUSG00000022246	Rai14	1700008J19Rik|1700020L11Rik|Ankycorbin|Norpeg|mKIAA1334	retinoic acid induced 14	protein-coding	0.090000	0.736318	
mm_12985.1	chr2	90847398	90847598	+	1	NA	NA	NA	343	NM_001317242	56428	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	0.080000	0.686567	
mm_32025.1	chr4	95161377	95161577	+	1	NA	NA	NA	-109255	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.095000	0.706468	
mm_14093.1	chr2	125162897	125163097	+	1	NA	NA	NA	10397	NM_001079690	20495	Mm.3914	NM_011389	ENSMUSG00000027202	Slc12a1	AI788571|D630042G03Rik|Nkcc2|mBSC1|urehr3	solute carrier family 12, member 1	protein-coding	0.010000	0.437811	20(TGCTCTTTAAGG,-,0.00)
mm_123466.1	chr14	65973255	65973455	-	1	NA	NA	NA	4872	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.025000	0.487562	
mm_150629.1	chr19	41344840	41345040	+	1	NA	NA	NA	40130	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.025000	0.532338	
mm_11854.1	chr2	45774758	45774958	+	1	NA	NA	NA	78253	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.000000	0.353234	
mm_53026.1	chr6	124476367	124476567	+	1	NA	NA	NA	-11683	NM_153508	232370	Mm.193701	NM_153508	ENSMUSG00000008153	Clstn3	CSTN3|Cs3|Cst-3|alc-beta	calsyntenin 3	protein-coding	0.020000	0.527363	
mm_126316.1	chr15	79687880	79688080	+	1	NA	NA	NA	-108	NM_028792	74158	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	0.125000	0.711443	
mm_42096.1	chr5	110344466	110344666	+	1	NA	NA	NA	-164	NR_132326	381667	Mm.332572	NM_001033459	ENSMUSG00000072754	Lrcol1	Clpsl3|Gm1679	leucine rich colipase-like 1	protein-coding	0.010000	0.552239	
mm_135303.1	chr16	38709613	38709813	-	1	NA	NA	NA	3322	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.020000	0.422886	
mm_13875.1	chr2	119897152	119897352	+	1	NA	NA	NA	24	NM_013720	29808	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	0.105000	0.661692	
mm_145303.1	chr18	53349426	53349626	+	1	NA	NA	NA	68481	NM_008908	19038	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding	0.010000	0.402985	55(GGCTATTTGAGG,-,0.00)
mm_54494.1	chr6	35509985	35510185	-	1	NA	NA	NA	29803	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.398010	
mm_144913.1	chr18	37473450	37473650	+	1	NA	NA	NA	4	NM_053140	93886	Mm.283857	NM_053140	ENSMUSG00000047033	Pcdhb15	Pcdhb7|PcdhbO	protocadherin beta 15	protein-coding	0.015000	0.492537	
mm_107754.1	chr12	59070155	59070355	+	1	NA	NA	NA	3336	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.035000	0.467662	
mm_102417.1	chr11	59208572	59208772	-	1	NA	NA	NA	311	NM_024210	67862	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	0.115000	0.731343	
mm_74207.1	chr8	123893168	123893368	+	1	NA	NA	NA	1507	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.035000	0.567164	
mm_138364.1	chr17	35000816	35001016	+	1	NA	NA	NA	9	NM_011690	22321	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.140000	0.746269	
mm_167022.1	chr7	65635857	65636057	-	1	NA	NA	NA	-8941	NM_172310	272396	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0.015000	0.547264	
mm_124683.1	chr15	6430970	6431170	+	1	NA	NA	NA	-14263	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.025000	0.522388	
mm_86006.1	chr9	112233162	112233362	-	1	NA	NA	NA	-761	NM_001177616	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.000000	0.383085	
mm_156269.1	chrX	136833225	136833425	+	1	NA	NA	NA	10579	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.010000	0.477612	
mm_137863.1	chr17	31296122	31296322	+	1	NA	NA	NA	-2	NM_001242427	224674	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.130000	0.751244	
mm_59238.1	chr7	24778237	24778437	+	1	NA	NA	NA	1133	NM_007675	26366	Mm.30300	NM_007675	ENSMUSG00000054169	Ceacam10	Bgp3|Cea10	carcinoembryonic antigen-related cell adhesion molecule 10	protein-coding	0.025000	0.442786	-22(CCATTAATAGGA,+,0.00)
mm_99481.1	chr11	102604730	102604930	+	1	NA	NA	NA	399	NM_020510	57265	Mm.36416	NM_020510	ENSMUSG00000050288	Fzd2	AL033370|AW456835|Fz10|Fzd10|Mfz10|Mfz10a	frizzled class receptor 2	protein-coding	0.080000	0.701493	
mm_48314.1	chr5	138809956	138810156	-	1	NA	NA	NA	-10024	NM_001195128	384244	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0.005000	0.537313	
mm_39289.1	chr5	4023250	4023450	+	1	NA	NA	NA	81347	NM_020010	13121	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	0.030000	0.537313	82(GCTTAAAGAGCA,+,0.00)
mm_98611.1	chr11	95842614	95842814	+	1	NA	NA	NA	46	NM_001038664	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.005000	0.562189	
mm_171580.1	chr4	147492248	147492448	+	1	NA	NA	NA	-60929	NM_001014397	433804	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154|OTTMUSG00000010673	zinc finger protein 985	protein-coding	0.025000	0.492537	
mm_54940.1	chr6	48554562	48554762	-	1	NA	NA	NA	-137	NM_001110160	243371	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	0.050000	0.502488	-98(TTGTTTTTAAGG,-,0.00),-96(GTTTTTAAGGGA,+,0.00)
mm_52556.1	chr6	116073731	116073931	+	1	NA	NA	NA	-78826	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.020000	0.482587	
mm_172000.1	chr6	107034461	107034661	+	1	NA	NA	NA	-234474	NM_175357	58799	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.010000	0.502488	-22(TCCTTTATAAAG,-,0.00),-20(CTTTATAAAGCA,+,0.00)
mm_76008.1	chr8	72570950	72571150	-	1	NA	NA	NA	-2	NM_172396	66818	Mm.22565	NM_172396	ENSMUSG00000044600	Smim7	9130011J15Rik	small integral membrane protein 7	protein-coding	0.055000	0.532338	
mm_123336.1	chr14	63128620	63128820	-	1	NA	NA	NA	6258	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.020000	0.522388	
mm_166736.1	chr6	123172792	123172992	+	1	NA	NA	NA	-131	NM_001004159	381809	Mm.333372	NM_001004159	ENSMUSG00000067767	Clec4b2	Aplra1|F830043G12Rik|mDCAR1	C-type lectin domain family 4, member b2	protein-coding	0.010000	0.412935	-33(GTCCTTAAATAG,-,0.00),-31(CCTTAAATAGTG,+,0.00)
mm_83670.1	chr9	49756324	49756524	-	1	NA	NA	NA	42645	NM_001081445	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding	0.005000	0.313433	
mm_161690.1	chr17	22165897	22166097	-	1	NA	NA	NA	-20	NM_177596	210853	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	0.035000	0.497512	
mm_21373.1	chr2	157279467	157279667	-	1	NA	NA	NA	-18	NM_001039557	629499	Mm.384235	NM_001039557	ENSMUSG00000074627	Mroh8	4922505G16Rik	maestro heat-like repeat family member 8	protein-coding	0.120000	0.716418	
mm_40255.1	chr5	38225793	38225993	+	1	NA	NA	NA	5411	NM_025281	17089	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	0.005000	0.527363	
mm_26663.1	chr3	154707542	154707742	+	1	NA	NA	NA	-3491	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.005000	0.507463	
mm_24923.1	chr3	96525075	96525275	+	1	NA	NA	NA	-10	NM_027126	69585	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0.005000	0.557214	
mm_64613.1	chr7	3502460	3502660	-	1	NA	NA	NA	-8	NM_177363	245126	Mm.245747	NM_177363	ENSMUSG00000053338	Tarm1	9930022N03Rik|ENSMUSG00000053338|Gm9904|OLT-2	T cell-interacting, activating receptor on myeloid cells 1	protein-coding	0.020000	0.512438	
mm_55979.1	chr6	85869036	85869236	-	1	NA	NA	NA	1	NM_053096	93673	Mm.24251	NM_053096	ENSMUSG00000033634	Nat8f2	Cml2	N-acetyltransferase 8 (GCN5-related) family member 2	protein-coding	0.010000	0.492537	
mm_95490.1	chr11	51606924	51607124	+	1	NA	NA	NA	-143	NM_010448	15384	Mm.256875	NM_010448	ENSMUSG00000020358	Hnrnpab	3010025C11Rik|CBF-A|Cgbfa|Hnrpab	heterogeneous nuclear ribonucleoprotein A/B	protein-coding	0.100000	0.597015	
mm_7852.1	chr1	132391570	132391770	-	1	NA	NA	NA	-284	NM_178874	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.165000	0.860697	
mm_170118.1	chr17	39846585	39846785	+	1	NA	NA	NA	3688	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.120000	0.651741	
mm_157988.1	chrX	94212814	94213014	-	1	NA	NA	NA	-263	NM_012010	26905	Mm.218851	NM_012010	ENSMUSG00000035150	Eif2s3x	AA409828|AA547477|AI314668|Eif-2gx	eukaryotic translation initiation factor 2, subunit 3, structural gene X-linked	protein-coding	0.065000	0.567164	
mm_133576.1	chr16	91406375	91406575	+	1	NA	NA	NA	240	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.090000	0.746269	
mm_166354.1	chr5	121220208	121220408	+	1	NA	NA	NA	89	NM_181421	269700	Mm.184589	NM_181421	ENSMUSG00000042744	Gm15800	A130010L24|AU042671|BC019639|EG545802|OTTMUSG00000026283|mKIAA0614	predicted gene 15800	protein-coding	0.165000	0.800995	
mm_109143.1	chr12	107129564	107129764	+	1	NA	NA	NA	-413340	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.020000	0.472637	
mm_11002.1	chr2	26454865	26455065	+	1	NA	NA	NA	-9749	NM_153125	227648	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	0.010000	0.363184	
mm_62074.1	chr7	92777484	92777684	+	1	NA	NA	NA	35870	NM_029494	75985	Mm.323004	NM_029494	ENSMUSG00000030643	Rab30	5033421K01Rik|AI323892|Rsb30	RAB30, member RAS oncogene family	protein-coding	0.025000	0.547264	
mm_7681.1	chr1	128589261	128589461	-	1	NA	NA	NA	2938	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.040000	0.552239	
mm_9071.1	chr1	168342910	168343110	-	1	NA	NA	NA	89159	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.020000	0.467662	
mm_88646.1	chr10	79952310	79952510	+	1	NA	NA	NA	-7742	NM_175450	216156	Mm.35828	NM_175450	ENSMUSG00000035754	Wdr18	2310012I10Rik|AU044733|AW122032	WD repeat domain 18	protein-coding	0.025000	0.368159	
mm_86158.1	chr9	118149993	118150193	-	1	NA	NA	NA	103	NM_026442	67899	Mm.9953	NM_026442	ENSMUSG00000039163	Cmc1	2010110K16Rik|2010312P05Rik|AI596001	COX assembly mitochondrial protein 1	protein-coding	0.115000	0.731343	
mm_43518.1	chr5	137150445	137150645	+	1	NA	NA	NA	-34338	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.467662	
mm_106509.1	chr11	120467251	120467451	-	1	NA	NA	NA	249	NM_197995	70317	Mm.485046	NM_197995	ENSMUSG00000057594	Arl16	2600005N12Rik	ADP-ribosylation factor-like 16	protein-coding	0.060000	0.636816	
mm_138917.1	chr17	43607143	43607343	+	1	NA	NA	NA	-15734	NR_045444	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.025000	0.527363	
mm_52051.1	chr6	97213850	97214050	+	1	NA	NA	NA	3158	NM_022992	65106	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	0.000000	0.462687	
mm_102560.1	chr11	61453852	61454052	-	1	NA	NA	NA	40	NM_009548	22671	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	0.020000	0.547264	
mm_76636.1	chr8	92355744	92355944	-	1	NA	NA	NA	276	NR_110452	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	0.170000	0.800995	
mm_64302.1	chr7	141861760	141861960	+	1	NA	NA	NA	22788	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.000000	0.487562	
mm_120534.1	chr14	67233216	67233416	+	1	NA	NA	NA	24	NM_001276387	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.075000	0.601990	
mm_31321.1	chr4	46165972	46166172	+	1	NA	NA	NA	27561	NM_001033201	433702	Mm.389536	NM_001033201	ENSMUSG00000028330	Ncbp1	AU014645|AW538051|CBP80	nuclear cap binding protein subunit 1	protein-coding	0.010000	0.412935	
mm_48694.1	chr5	146820947	146821147	-	1	NA	NA	NA	-11843	NM_019647	19933	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	0.015000	0.587065	
mm_97776.1	chr11	82115083	82115283	+	1	NA	NA	NA	-2	NM_021443	20307	Mm.42029	NM_021443	ENSMUSG00000009185	Ccl8	1810063B20Rik|AB023418|HC14|MCP-2|Mcp2|Scya8	chemokine (C-C motif) ligand 8	protein-coding	0.010000	0.452736	-33(CCCTATAAAAGG,-,0.00)
mm_152008.1	chr19	5929538	5929738	-	1	NA	NA	NA	-4822	NM_026772	104252	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.025000	0.587065	
mm_152216.1	chr19	8252182	8252382	-	1	NA	NA	NA	-33382	NM_001347426	236293	Mm.440581	NM_172776	ENSMUSG00000075044	Slc22a29	D630002G06Rik	solute carrier family 22. member 29	protein-coding	0.080000	0.706468	
mm_125714.1	chr15	68928338	68928538	+	1	NA	NA	NA	18	NM_010158	13992	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding	0.160000	0.776119	
mm_145685.1	chr18	61639518	61639718	+	1	NA	NA	NA	-35	NR_045420	545261	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0.030000	0.587065	
mm_43777.1	chr5	141867451	141867651	+	1	NA	NA	NA	-533946	NM_199068	17425	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf	forkhead box K1	protein-coding	0.010000	0.427861	
mm_167817.1	chr9	124282060	124282260	-	1	NA	NA	NA	30534	NM_001243118	630836	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0.030000	0.537313	
mm_123483.1	chr14	65990363	65990563	-	1	NA	NA	NA	18747	NM_178747	268756	Mm.26207	NM_178747	ENSMUSG00000034450	Gulo	5730581M22|AU018375|BC028822|GLO|LGO|sfx|unh|unhip	gulonolactone (L-) oxidase	protein-coding	0.025000	0.601990	
mm_12096.1	chr2	60901856	60902056	+	1	NA	NA	NA	-20518	NM_001141931	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.010000	0.427861	-68(CCTTATATGACG,+,0.00)
mm_131472.1	chr16	17070130	17070330	+	1	NA	NA	NA	91	NM_001291047	106369	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee-like 1 (Drosophila)	protein-coding	0.140000	0.716418	
mm_127958.1	chr15	11905516	11905716	-	1	NA	NA	NA	58	NM_008728	18162	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	0.105000	0.741294	
mm_65326.1	chr7	24972537	24972737	-	1	NA	NA	NA	91	NM_010261	14470	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.045000	0.606965	
mm_48509.1	chr5	142821349	142821549	-	1	NA	NA	NA	-4062	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.065000	0.616915	
mm_80746.1	chr9	94971719	94971919	+	1	NA	NA	NA	219990	NR_106116	102465763		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.000000	0.388060	
mm_149361.1	chr19	11121297	11121497	+	1	NA	NA	NA	9481	NM_027058	69369	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0.145000	0.731343	
mm_170488.1	chr19	17926670	17926870	+	1	NA	NA	NA	-89138	NM_001190483	18552	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding	0.040000	0.502488	
mm_114998.1	chr13	97847838	97848038	+	1	NA	NA	NA	287938	NR_046157	328314	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.015000	0.467662	
mm_163939.1	chr14	51145172	51145372	-	1	NA	NA	NA	1495	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.005000	0.398010	
mm_130809.1	chr15	101734210	101734410	-	1	NA	NA	NA	8787	NM_019956	56735	Mm.358677	NM_019956	ENSMUSG00000051879	Krt71	AA589543|Ca|Cal4|Cu|Krt2-6g|mK6irs|mK6irs1	keratin 71	protein-coding	0.005000	0.562189	
mm_87118.1	chr10	33256830	33257030	+	1	NA	NA	NA	-573	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.005000	0.427861	-33(TTCTTTAAATGG,-,0.00),-31(CTTTAAATGGGG,+,0.00)
mm_25555.1	chr3	116008289	116008489	+	1	NA	NA	NA	92	NM_001163514	58193	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	0.035000	0.552239	
mm_55736.1	chr6	77472053	77472253	-	1	NA	NA	NA	-89678	NR_045141	70753	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	0.000000	0.318408	
mm_126908.1	chr15	90224184	90224384	+	1	NA	NA	NA	-27	NM_001033441	380959	Mm.17853	NM_001033441	ENSMUSG00000075470	Alg10b	AA469671|AU045404|AW123895|C85569|Deaf1|Gm917|nse5	asparagine-linked glycosylation 10B (alpha-1,2-glucosyltransferase)	protein-coding	0.105000	0.666667	
mm_58002.1	chr6	136173547	136173747	-	1	NA	NA	NA	-136	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.025000	0.626866	
mm_172375.1	chr7	127286366	127286566	-	1	NA	NA	NA	-9794	NM_001253873	16408	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.045000	0.517413	
mm_66999.1	chr7	64872915	64873115	-	1	NA	NA	NA	25	NM_023239	66647	Mm.19944	NM_023239	ENSMUSG00000070520	Ndnl2	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Nsmce3|mage-g1	necdin-like 2	protein-coding	0.150000	0.721393	
mm_160409.1	chr8	72099511	72099711	+	1	NA	NA	NA	-151	NM_146539	258532	Mm.377557	NM_146539	ENSMUSG00000061561	Olfr373	MOR282-2	olfactory receptor 373	protein-coding	0.015000	0.582090	55(GTTTTTATAGGA,+,0.00)
mm_62126.1	chr7	96951421	96951621	+	1	NA	NA	NA	-6	NM_153591	244141	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.085000	0.616915	
mm_91633.1	chr10	42191907	42192107	-	1	NA	NA	NA	84735	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.010000	0.502488	85(GACCTTTAATGG,-,0.00),87(CCTTTAATGGTG,+,0.00)
mm_120911.1	chr14	76251393	76251593	+	1	NA	NA	NA	140602	NM_013745	27275	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.010000	0.547264	
mm_152270.1	chr19	8818877	8819077	-	1	NA	NA	NA	317	NM_027412	70387	Mm.261082	NM_027412	ENSMUSG00000071660	Ttc9c	2210019E14Rik|6330408J23Rik	tetratricopeptide repeat domain 9C	protein-coding	0.045000	0.502488	
mm_1790.1	chr1	78674106	78674306	+	1	NA	NA	NA	15766	NM_001136226	195434	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0.000000	0.313433	-48(GCTTTTAGGGAA,+,0.00)
mm_137719.1	chr17	29100333	29100533	+	1	NA	NA	NA	6664	NM_007669	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.005000	0.522388	
mm_12852.1	chr2	83705959	83706159	+	1	NA	NA	NA	-18338	NM_008402	16410	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.025000	0.492537	
mm_23218.1	chr3	47094130	47094330	+	1	NA	NA	NA	-193448	NR_105800	102465199		NR_105800	ENSMUSG00000098417	Mir6379	Gm27730|mmu-mir-6379	microRNA 6379	ncRNA	0.000000	0.402985	
mm_75147.1	chr8	35826326	35826526	-	1	NA	NA	NA	133	NM_027998	71908	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	0.085000	0.656716	
mm_132873.1	chr16	48612083	48612283	+	1	NA	NA	NA	159773	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.020000	0.462687	
mm_46258.1	chr5	99609773	99609973	-	1	NA	NA	NA	119187	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.005000	0.298507	
mm_136713.1	chr17	7928432	7928632	+	1	NA	NA	NA	2532	NM_145968	72536	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik	T cell activation Rho GTPase activating protein	protein-coding	0.010000	0.368159	
mm_84304.1	chr9	63602355	63602555	-	1	NA	NA	NA	38	NM_030068	78250	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	0.085000	0.666667	
mm_84299.1	chr9	63384685	63384885	-	1	NA	NA	NA	-6933	NM_011840	23938	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	0.010000	0.442786	
mm_41659.1	chr5	98854695	98854895	+	1	NA	NA	NA	380	NM_001310677	110075	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0.085000	0.671642	
mm_79461.1	chr9	56418603	56418803	+	1	NA	NA	NA	-143	NM_025812	66867	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0.045000	0.417910	
mm_105968.1	chr11	115491216	115491416	-	1	NA	NA	NA	-213	NR_136931	102634812	Mm.390379	NR_136931		LOC102634812	-	ribosomal protein L39 pseudogene	pseudo	0.035000	0.562189	
mm_90225.1	chr10	121034183	121034383	+	1	NA	NA	NA	279	NM_011915	24117	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0.065000	0.616915	
mm_46124.1	chr5	92470799	92470999	-	1	NA	NA	NA	12342	NR_105843	102466159		NR_105843	ENSMUSG00000099160	Mir6415	Gm27714|mmu-mir-6415	microRNA 6415	ncRNA	0.015000	0.442786	
mm_95115.1	chr11	34077371	34077571	+	1	NA	NA	NA	30270	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.000000	0.432836	1(GGGTATAAATAC,-,0.00)
mm_55563.1	chr6	71360709	71360909	-	1	NA	NA	NA	-12618	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.010000	0.492537	
mm_168901.1	chr12	55080470	55080670	+	1	NA	NA	NA	74	NM_011899	24067	Mm.471968	NM_011899	ENSMUSG00000073079	Srp54a	54kDa|Srp54	signal recognition particle 54A	protein-coding	0.070000	0.611940	
mm_92422.1	chr10	77055657	77055857	-	1	NA	NA	NA	22545	NM_031196	20509	Mm.265060	NM_031196	ENSMUSG00000001436	Slc19a1	AI323572|RFC|RFC-1|RFC1	solute carrier family 19 (folate transporter), member 1	protein-coding	0.040000	0.601990	
mm_105238.1	chr11	102318873	102319073	-	1	NA	NA	NA	123	NM_001302955	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.175000	0.791045	
mm_119621.1	chr14	51128913	51129113	+	1	NA	NA	NA	-55	NM_030098	78416	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	0.010000	0.432836	
mm_32103.1	chr4	98726678	98726878	+	1	NA	NA	NA	24	NM_001081202	381591	Mm.34340	NM_001081202	ENSMUSG00000087166	L1td1	AA546746|AB211064|D76865|ECAT11	LINE-1 type transposase domain containing 1	protein-coding	0.045000	0.616915	
mm_127369.1	chr15	100761669	100761869	+	1	NA	NA	NA	22	NM_021530	59033	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0.105000	0.666667	
mm_125784.1	chr15	74716505	74716705	+	1	NA	NA	NA	1766	NM_028216	72373	Mm.46395	NM_028216	ENSMUSG00000022598	Psca	2210408B04Rik	prostate stem cell antigen	protein-coding	0.020000	0.636816	
mm_72340.1	chr8	79356036	79356236	+	1	NA	NA	NA	43332	NM_008539	17125	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.025000	0.606965	
mm_63640.1	chr7	128541810	128542010	+	1	NA	NA	NA	18327	NM_013863	29810	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0.020000	0.626866	
mm_116835.1	chr13	54687566	54687766	-	1	NA	NA	NA	142	NM_001146025	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.135000	0.721393	4(TCTTAAAGGGCC,+,0.00)
mm_123427.1	chr14	64440398	64440598	-	1	NA	NA	NA	528	NM_001253715	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.050000	0.626866	
mm_68109.1	chr7	102019455	102019655	-	1	NA	NA	NA	-1400	NM_010531	16068	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.005000	0.472637	
mm_40484.1	chr5	55624494	55624694	+	1	NA	NA	NA	1274602	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA	0.020000	0.427861	
mm_51129.1	chr6	68425476	68425676	+	1	NA	NA	NA	-859877	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.000000	0.427861	
mm_165563.1	chr3	14886537	14886737	+	1	NA	NA	NA	211	NM_009801	12349	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0.080000	0.666667	22(GCCTATAAAAGC,-,0.00)
mm_80291.1	chr9	73093866	73094066	+	1	NA	NA	NA	-8432	NM_025890	66991	Mm.471745	NM_025890	ENSMUSG00000092622	Khdc3	2410004A20Rik|AI467128|FILIA|OEEP48	KH domain containing 3, subcortical maternal complex member	protein-coding	0.000000	0.358209	
mm_82966.1	chr9	35686924	35687124	-	1	NA	NA	NA	347	NM_001199953	100312987	Mm.445254	NM_001167677	ENSMUSG00000091215	Pate1	Gm17252|Pate	prostate and testis expressed 1	protein-coding	0.005000	0.422886	
mm_105777.1	chr11	109721988	109722188	-	1	NA	NA	NA	168	NM_153782	208659	Mm.208662	NM_153782	ENSMUSG00000020614	Fam20a	AI606893	family with sequence similarity 20, member A	protein-coding	0.060000	0.671642	
mm_55397.1	chr6	60774136	60774336	-	1	NA	NA	NA	54768	NM_001042451	20617	Mm.17484	NM_009221	ENSMUSG00000025889	Snca	NACP|alphaSYN	synuclein, alpha	protein-coding	0.000000	0.393035	
mm_169817.1	chr16	20651560	20651760	+	1	NA	NA	NA	8	NM_134101	21762	Mm.243234	NM_134101	ENSMUSG00000006998	Psmd2	9430095H01Rik|AA407121|TEG-190|Tex190	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	protein-coding	0.095000	0.671642	
mm_128728.1	chr15	64095240	64095440	-	1	NA	NA	NA	-34892	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.000000	0.308458	
mm_61590.1	chr7	80025179	80025379	+	1	NA	NA	NA	465	NM_001146000	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.100000	0.726368	
mm_105962.1	chr11	115463338	115463538	-	1	NA	NA	NA	965	NM_001080934	217316	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	0.020000	0.601990	
mm_155614.1	chrX	83069308	83069508	+	1	NA	NA	NA	120538	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.000000	0.432836	
mm_142289.1	chr17	40298123	40298323	-	1	NA	NA	NA	20984	NM_009638	11571	Mm.16781	NM_009638	ENSMUSG00000025431	Crisp1	AW324342|Aeg1|CRISP-1	cysteine-rich secretory protein 1	protein-coding	0.005000	0.328358	
mm_118863.1	chr14	25842144	25842344	+	1	NA	NA	NA	89	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.120000	0.676617	
mm_83522.1	chr9	46229941	46230141	-	1	NA	NA	NA	1411	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.060000	0.601990	
mm_52543.1	chr6	115933886	115934086	+	1	NA	NA	NA	2059	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.045000	0.572139	
mm_46008.1	chr5	90786350	90786550	-	1	NA	NA	NA	349	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.025000	0.597015	
mm_80386.1	chr9	75468493	75468693	+	1	NA	NA	NA	27069	NM_001039522	235497	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0.040000	0.626866	
mm_44543.1	chr5	24555311	24555511	-	1	NA	NA	NA	58	NR_033188	231045	Mm.255800	NM_177676	ENSMUSG00000038199	4931409K22Rik	Iqca1l|Iqca1p1	RIKEN cDNA 4931409K22 gene	protein-coding	0.020000	0.507463	50(GGCTTGAAAAGC,-,0.00)
mm_107260.1	chr12	28802123	28802323	+	1	NA	NA	NA	50395	NM_201357	380752	Mm.273724	NM_201357	ENSMUSG00000036613	Tssc1	D12Ertd604e|Eipr1	tumor suppressing subtransferable candidate 1	protein-coding	0.000000	0.477612	
mm_142786.1	chr17	50158719	50158919	-	1	NA	NA	NA	31678	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.010000	0.522388	
mm_33979.1	chr4	137687309	137687509	+	1	NA	NA	NA	5782	NM_001256218	110351	Mm.180763	NM_029563	ENSMUSG00000041351	Rap1gap	1300019I11Rik|2310004O14Rik|AI427470|ARPP-90|Gap|Rap1GAP1|Rap1ga1	Rap1 GTPase-activating protein	protein-coding	0.015000	0.537313	
mm_128850.1	chr15	71728188	71728388	-	1	NA	NA	NA	-450	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding	0.090000	0.701493	
mm_18006.1	chr2	38229942	38230142	-	1	NA	NA	NA	57342	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.025000	0.497512	
mm_162436.1	chr1	105990636	105990836	+	1	NA	NA	NA	330	NM_001122675	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.145000	0.766169	
mm_59320.1	chr7	25301319	25301519	+	1	NA	NA	NA	60	NM_001081294	623131	Mm.172160	NM_001081294	ENSMUSG00000058741	Prr19	EG623131	proline rich 19	protein-coding	0.055000	0.626866	
mm_69904.1	chr7	141639728	141639928	-	1	NA	NA	NA	15491	NM_001330001	353328	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0.010000	0.507463	
mm_19000.1	chr2	76870309	76870509	-	1	NA	NA	NA	112138	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.030000	0.507463	
mm_25540.1	chr3	115800992	115801192	+	1	NA	NA	NA	-86037	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.015000	0.472637	-84(GATCATAAAAGG,-,0.00),-7(TCTTTTAAGCAC,+,0.00)
mm_57317.1	chr6	124729847	124730047	-	1	NA	NA	NA	3207	NM_013545	15170	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.020000	0.532338	
mm_153856.1	chr19	46395639	46395839	-	1	NA	NA	NA	-4	NM_016860	54130	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0.070000	0.616915	
mm_140335.1	chr17	86778403	86778603	+	1	NA	NA	NA	24639	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.010000	0.427861	
mm_40055.1	chr5	33996028	33996228	+	1	NA	NA	NA	144	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.115000	0.681592	
mm_51998.1	chr6	92816344	92816544	+	1	NA	NA	NA	84997	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	0.020000	0.557214	
mm_113486.1	chr13	37376530	37376730	+	1	NA	NA	NA	31285	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.015000	0.507463	
mm_50532.1	chr6	49045521	49045721	+	1	NA	NA	NA	9103	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.015000	0.442786	
mm_153254.1	chr19	36689244	36689444	-	1	NA	NA	NA	135	NR_033510	668215	Mm.394223	NR_033510	ENSMUSG00000087579	1500017E21Rik	-	RIKEN cDNA 1500017E21 gene	ncRNA	0.025000	0.517413	
mm_145502.1	chr18	60391373	60391573	+	1	NA	NA	NA	15444	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.412935	
mm_156251.1	chrX	136590754	136590954	+	1	NA	NA	NA	72855	NM_001310690	245616	Mm.246625	NM_177749	ENSMUSG00000031424	Kir3dl1	Kirl1|Kirl2|Krl1	killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1	protein-coding	0.025000	0.527363	
mm_138610.1	chr17	35704807	35705007	+	1	NA	NA	NA	-768	NM_172962	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.030000	0.487562	
mm_25079.1	chr3	100162395	100162595	+	1	NA	NA	NA	32	NR_104341	14547	Mm.279228	NM_010269	ENSMUSG00000027865	Gdap2	C77050|D3Ertd801e	ganglioside-induced differentiation-associated-protein 2	protein-coding	0.090000	0.611940	
mm_172503.1	chr7	67759410	67759610	-	1	NA	NA	NA	232	NM_183312	233335	Mm.60526	NM_183312	ENSMUSG00000030554	Synm	4930412K21Rik|AI852401|Dmn|E130104F11|Syn|Synemin	synemin, intermediate filament protein	protein-coding	0.095000	0.651741	
mm_10871.1	chr2	25218676	25218876	+	1	NA	NA	NA	31	NM_026624	68222	Mm.227260	NM_026624	ENSMUSG00000026969	Fam166a	4931415M17	family with sequence similarity 166, member A	protein-coding	0.000000	0.522388	
mm_97750.1	chr11	80477307	80477507	+	1	NA	NA	NA	361	NM_009871	12569	Mm.142275	NM_009871	ENSMUSG00000048895	Cdk5r1	Cdk5r|D11Bwg0379e|p25|p35	cyclin-dependent kinase 5, regulatory subunit 1 (p35)	protein-coding	0.120000	0.721393	
mm_131574.1	chr16	18348247	18348447	+	1	NA	NA	NA	165	NM_001272029	11877	Mm.293599	NM_033474	ENSMUSG00000000325	Arvcf	-	armadillo repeat gene deleted in velo-cardio-facial syndrome	protein-coding	0.070000	0.721393	
mm_167494.1	chr9	13179276	13179476	+	1	NA	NA	NA	66365	NM_001033181	77532	Mm.459434	NM_001033181	ENSMUSG00000079083	Jrkl	C030035D04Rik|HHMJG	Jrk-like	protein-coding	0.015000	0.452736	
mm_52411.1	chr6	113389153	113389353	+	1	NA	NA	NA	-7	NM_001142732	101100	Mm.388573	NM_133923	ENSMUSG00000030276	Ttll3	4833441J24Rik|AI450050	tubulin tyrosine ligase-like family, member 3	protein-coding	0.030000	0.552239	
mm_104024.1	chr11	85929745	85929945	-	1	NA	NA	NA	33080	NM_172798	21387	Mm.275336	NM_011536	ENSMUSG00000000094	Tbx4	3930401C23	T-box 4	protein-coding	0.020000	0.507463	
mm_29262.1	chr3	107326476	107326676	-	1	NA	NA	NA	6713	NM_001045807	229700	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.000000	0.233831	39(GTCTTTTAAAAA,-,0.00)
mm_8137.1	chr1	136255661	136255861	-	1	NA	NA	NA	5112	NM_001101516	383563	Mm.40367	NM_001101516	ENSMUSG00000052759	Gpr25	Gm1300	G protein-coupled receptor 25	protein-coding	0.010000	0.492537	
mm_16397.1	chr2	179560779	179560979	+	1	NA	NA	NA	118448	NM_009867	12561	Mm.184711	NM_009867	ENSMUSG00000000305	Cdh4	AW120700|R-CAD|R-Cadh|Rcad	cadherin 4	protein-coding	0.010000	0.452736	64(GTGTAGAAAAGC,-,0.00)
mm_153763.1	chr19	45591749	45591949	-	1	NA	NA	NA	31234	NM_172639	226162	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	5330431N19Rik|Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.005000	0.467662	
mm_162784.1	chr10	70592674	70592874	-	1	NA	NA	NA	38	NM_001162846	70911	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding	0.010000	0.447761	-9(TGGTCTTTAAGG,-,0.00)
mm_87444.1	chr10	51481586	51481786	+	1	NA	NA	NA	1074	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.005000	0.492537	
mm_66164.1	chr7	31256191	31256391	-	1	NA	NA	NA	-7445	NM_001310660	100043827		NM_001310660		Scgb2b1	Abpbg1|Gm4677	secretoglobin, family 2B, member 1	protein-coding	0.010000	0.532338	
mm_161332.1	chr14	50641996	50642196	+	1	NA	NA	NA	-99	NM_146299	258296	Mm.377418	NM_146299	ENSMUSG00000050028	Olfr745	MOR106-11	olfactory receptor 745	protein-coding	0.000000	0.303483	
mm_99259.1	chr11	101188189	101188389	+	1	NA	NA	NA	12172	NM_016782	53321	Mm.474527	NM_016782	ENSMUSG00000017167	Cntnap1	AI841080|Caspr|NCP1|Nrxn4|p190|shm	contactin associated protein-like 1	protein-coding	0.010000	0.557214	
mm_165656.1	chr3	85887719	85887919	+	1	NA	NA	NA	-301	NM_177130	320302	Mm.482978	NM_177130	ENSMUSG00000031286	Glt28d2	4732486J07Rik|Glt28d1l	glycosyltransferase 28 domain containing 2	protein-coding	0.100000	0.631841	
mm_158166.1	chrX	103493309	103493509	-	1	NA	NA	NA	-149	NR_015508	70252	Mm.380486	NR_015508	ENSMUSG00000097571	Jpx	2010000I03Rik|2510040I06Rik|Enox	Jpx transcript, Xist activator (non-protein coding)	ncRNA	0.095000	0.631841	-71(GTCCCTAAATGG,-,0.00)
mm_82632.1	chr9	21962254	21962454	-	1	NA	NA	NA	1222	NM_010149	13857	Mm.2653	NM_010149	ENSMUSG00000006235	Epor	-	erythropoietin receptor	protein-coding	0.040000	0.592040	8(CCTTTTCTAGCG,+,0.00)
mm_39504.1	chr5	21194485	21194685	+	1	NA	NA	NA	8318	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.000000	0.288557	
mm_119843.1	chr14	54436773	54436973	+	1	NA	NA	NA	5275	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.020000	0.527363	39(GGATCTAAATGG,-,0.00)
mm_116498.1	chr13	44979116	44979316	-	1	NA	NA	NA	22880	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.005000	0.338308	
mm_134454.1	chr16	18411661	18411861	-	1	NA	NA	NA	1733	NM_001111063	12846	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.045000	0.597015	
mm_101650.1	chr11	36599188	36599388	-	1	NA	NA	NA	344953	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.005000	0.393035	
mm_148911.1	chr19	6974877	6975077	+	1	NA	NA	NA	-71	NM_008889	18938	Mm.140	NM_008889	ENSMUSG00000056612	Ppp1r14b	AOM172|PHI-1|PLCB3N|Png	protein phosphatase 1, regulatory (inhibitor) subunit 14B	protein-coding	0.100000	0.756219	-51(GGCCCTTTAAGG,-,0.00),-50(GCCCTTTAAGGG,-,0.00),-49(CCCTTTAAGGGG,+,0.00),-49(CCCTTTAAGGGG,-,0.00),-48(CCTTTAAGGGGG,+,0.00)
mm_29319.1	chr3	108017350	108017550	-	1	NA	NA	NA	523	NM_010358	14862	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	0.040000	0.532338	
mm_134223.1	chr16	11254223	11254423	-	1	NA	NA	NA	2	NM_001130008	14852	Mm.325827	NM_146066	ENSMUSG00000062203	Gspt1	AI314175|AI326449|AV307676|C79774|G1st|Gst-1	G1 to S phase transition 1	protein-coding	0.120000	0.636816	
mm_67135.1	chr7	72306524	72306724	-	1	NA	NA	NA	-29	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.065000	0.641791	-49(TCCCCTTTAAGG,-,0.00),-48(CCCCTTTAAGGC,-,0.00),-47(CCCTTTAAGGCG,+,0.00),-46(CCTTTAAGGCGG,+,0.00)
mm_101665.1	chr11	36770092	36770292	-	1	NA	NA	NA	174049	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.000000	0.368159	-14(TCCCTTATAAAG,-,0.00),-12(CCTTATAAAGGG,+,0.00),-12(CCTTATAAAGGG,-,0.00)
mm_16974.1	chr2	17731663	17731863	-	1	NA	NA	NA	-695	NM_028757	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0.030000	0.517413	-33(GGGTATAAAAAG,-,0.00)
mm_88047.1	chr10	67539704	67539904	+	1	NA	NA	NA	1874	NM_001347458	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.015000	0.517413	
mm_115432.1	chr13	117250496	117250696	+	1	NA	NA	NA	30023	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.010000	0.447761	
mm_108615.1	chr12	85524576	85524776	+	1	NA	NA	NA	50775	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.010000	0.517413	
mm_110525.1	chr12	54923023	54923223	-	1	NA	NA	NA	-60246	NM_007688	12632	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	0.030000	0.467662	
mm_76998.1	chr8	107269616	107269816	-	1	NA	NA	NA	13552	NR_039557	100628577		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.005000	0.437811	54(AGGTTTAAAAAG,-,0.00)
mm_99946.1	chr11	111073834	111074034	+	1	NA	NA	NA	7770	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.005000	0.308458	
mm_131507.1	chr16	17489514	17489714	+	1	NA	NA	NA	-63	NM_175178	72168	Mm.40038	NM_175178	ENSMUSG00000022763	Aifm3	2810401C16Rik|AI840249|Aifl	apoptosis-inducing factor, mitochondrion-associated 3	protein-coding	0.140000	0.810945	
mm_126272.1	chr15	79141241	79141441	+	1	NA	NA	NA	16	NM_027231	69833	Mm.279861	NM_027231	ENSMUSG00000033020	Polr2f	1810060D16Rik|RPB6	polymerase (RNA) II (DNA directed) polypeptide F	protein-coding	0.120000	0.631841	
mm_111946.1	chr12	109068110	109068310	-	1	NA	NA	NA	7	NM_001163175	380785	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0.165000	0.855721	
mm_34583.1	chr4	150147415	150147615	+	1	NA	NA	NA	-1457	NM_001085529	435818	Mm.359648	NM_001085529	ENSMUSG00000062064	Slc2a7	OTTMUSG00000010396	solute carrier family 2 (facilitated glucose transporter), member 7	protein-coding	0.005000	0.437811	
mm_116847.1	chr13	54749814	54750014	-	1	NA	NA	NA	-40	NM_012014	26913	Mm.41812	NM_012014	ENSMUSG00000069227	Gprin1	GRIN1|Z16	G protein-regulated inducer of neurite outgrowth 1	protein-coding	0.125000	0.741294	
mm_96335.1	chr11	65807119	65807319	+	1	NA	NA	NA	44	NM_001302375	52712	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding	0.130000	0.716418	
mm_113353.1	chr13	31819966	31820166	+	1	NA	NA	NA	13420	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.030000	0.562189	
mm_18095.1	chr2	44986497	44986697	-	1	NA	NA	NA	36580	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.005000	0.338308	
mm_37257.1	chr4	118436900	118437100	-	1	NA	NA	NA	343	NM_023223	107995	Mm.261764	NM_023223	ENSMUSG00000006398	Cdc20	2310042N09Rik|C87100|p55CDC	cell division cycle 20	protein-coding	0.080000	0.661692	
mm_24433.1	chr3	90541129	90541329	+	1	NA	NA	NA	6	NM_026416	67860	Mm.331185	NM_026416	ENSMUSG00000074457	S100a16	2300002L21Rik|AI325039|AI663996|DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding	0.025000	0.572139	
mm_152960.1	chr19	29360753	29360953	-	1	NA	NA	NA	1018	NM_026362	67759	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0.015000	0.477612	
mm_1160.1	chr1	60908913	60909113	+	1	NA	NA	NA	-12	NM_009843	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.035000	0.432836	47(GTCTATATAAAG,-,0.00),49(CTATATAAAGTC,+,0.00)
mm_147037.1	chr18	34860324	34860524	-	1	NA	NA	NA	-783	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.035000	0.616915	
mm_107211.1	chr12	26444475	26444675	+	1	NA	NA	NA	11877	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.010000	0.412935	
mm_43471.1	chr5	136694028	136694228	+	1	NA	NA	NA	-49	NM_001085387	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.015000	0.567164	
mm_135705.1	chr16	52815663	52815863	-	1	NA	NA	NA	-19	NR_040495	73820	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0.015000	0.517413	
mm_6741.1	chr1	83277026	83277226	-	1	NA	NA	NA	117364	NM_027725	71227	Mm.256482	NM_027725	ENSMUSG00000053161	Daw1	4930563E19Rik|4933429D11Rik|Wdr69|b2b1116Clo|b2b1584Clo	dynein assembly factor with WDR repeat domains 1	protein-coding	0.045000	0.502488	
mm_69860.1	chr7	141435251	141435451	-	1	NA	NA	NA	-757	NM_001177576	68267	Mm.33729	NM_026646	ENSMUSG00000019082	Slc25a22	1300006L01Rik|AI060884|Gc1	solute carrier family 25 (mitochondrial carrier, glutamate), member 22	protein-coding	0.065000	0.666667	
mm_23664.1	chr3	68494150	68494350	+	1	NA	NA	NA	69	NM_001282044	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.065000	0.611940	
mm_108177.1	chr12	76406404	76406604	+	1	NA	NA	NA	2134	NM_008301	15512	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0.020000	0.402985	
mm_159310.1	chr2	181202911	181203111	-	1	NA	NA	NA	-222	NM_009184	20459	Mm.4497	NM_009184	ENSMUSG00000038751	Ptk6	BRK|Sik|Tksk|tks	PTK6 protein tyrosine kinase 6	protein-coding	0.025000	0.492537	
mm_42761.1	chr5	121204436	121204636	+	1	NA	NA	NA	35	NM_011290	19988	Mm.262021	NM_011290	ENSMUSG00000029614	Rpl6	Taxreb107	ribosomal protein L6	protein-coding	0.055000	0.537313	-32(GCTTATAGACCG,+,0.00)
mm_145081.1	chr18	42394269	42394469	+	1	NA	NA	NA	-228	NM_138945	18998	Mm.488204	NM_138945	ENSMUSG00000024497	Pou4f3	Brn3.1|Brn3c|ddl|dreidel	POU domain, class 4, transcription factor 3	protein-coding	0.100000	0.726368	-34(GGGTATAAATGC,-,0.00)
mm_130048.1	chr15	89146946	89147146	-	1	NA	NA	NA	2560	NM_011161	19094	Mm.91969	NM_011161	ENSMUSG00000053137	Mapk11	P38b|Prkm11|Sapk2|Sapk2b|p38-2|p38beta|p38beta2	mitogen-activated protein kinase 11	protein-coding	0.060000	0.636816	
mm_107677.1	chr12	54343624	54343824	+	1	NA	NA	NA	47594	NR_033689	665239	Mm.26856	NR_033689		Gm7550	EG665239|Gm666	predicted gene 7550	ncRNA	0.015000	0.437811	
mm_134326.1	chr16	16358451	16358651	-	1	NA	NA	NA	24	NM_001276341	74006	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	0.090000	0.636816	
mm_157326.1	chrX	23295988	23296188	-	1	NA	NA	NA	-10529	NM_001290476	67455	Mm.224306	NM_026167	ENSMUSG00000036782	Klhl13	1200009K10Rik|AI451128|Bklhd2|D130072F20Rik	kelch-like 13	protein-coding	0.005000	0.427861	
mm_3304.1	chr1	137807160	137807360	+	1	NA	NA	NA	-159195	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.015000	0.358209	-81(GACCCTAAAAGT,-,0.00)
mm_119053.1	chr14	30654296	30654496	+	1	NA	NA	NA	21	NM_177815	328370	Mm.259657	NM_177815	ENSMUSG00000052395	Rft1	D930025H04	RFT1 homolog	protein-coding	0.085000	0.686567	
mm_43491.1	chr5	136953186	136953386	+	1	NA	NA	NA	11	NM_001347504	66437	Mm.25849	NM_025562	ENSMUSG00000019054	Fis1	2010003O14Rik|Ttc11	fission, mitochondrial 1	protein-coding	0.045000	0.572139	
mm_65664.1	chr7	28146722	28146922	-	1	NA	NA	NA	17356	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.035000	0.532338	
mm_51684.1	chr6	86487410	86487610	+	1	NA	NA	NA	717	NR_040293	381792	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.050000	0.597015	
mm_2740.1	chr1	128399271	128399471	+	1	NA	NA	NA	18045	NM_177445	226414	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	0.005000	0.333333	
mm_95683.1	chr11	54214664	54214864	+	1	NA	NA	NA	-1476	NR_045506	71056	Mm.56332	NR_045506	ENSMUSG00000086209	4933405E24Rik	-	RIKEN cDNA 4933405E24 gene	ncRNA	0.015000	0.482587	-35(GCCTATAAAGGA,+,0.00),-35(GCCTATAAAGGA,-,0.00)
mm_74712.1	chr8	17270502	17270702	-	1	NA	NA	NA	264783	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.005000	0.283582	
mm_92749.1	chr10	81014790	81014990	-	1	NA	NA	NA	35	NM_010319	14708	Mm.222496	NM_010319	ENSMUSG00000048240	Gng7	AI840417	guanine nucleotide binding protein (G protein), gamma 7	protein-coding	0.070000	0.651741	
mm_11823.1	chr2	44341665	44341865	+	1	NA	NA	NA	-276441	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.010000	0.442786	-14(GCCTCTAAAAGT,-,0.00),-13(CCTCTAAAAGTG,+,0.00)
mm_156645.1	chrX	157699060	157699260	+	1	NA	NA	NA	187	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.025000	0.487562	
mm_156487.1	chrX	144335920	144336120	+	1	NA	NA	NA	18054	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.015000	0.457711	
mm_87644.1	chr10	58391385	58391585	+	1	NA	NA	NA	-2888	NM_001193303	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.005000	0.378109	74(GCCTCTAAGAGG,-,0.00),75(CCTCTAAGAGGG,+,0.00)
mm_59232.1	chr7	24771574	24771774	+	1	NA	NA	NA	-5530	NM_007675	26366	Mm.30300	NM_007675	ENSMUSG00000054169	Ceacam10	Bgp3|Cea10	carcinoembryonic antigen-related cell adhesion molecule 10	protein-coding	0.000000	0.527363	
mm_114369.1	chr13	62964799	62964999	+	1	NA	NA	NA	6	NM_001289924	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.080000	0.641791	
mm_85256.1	chr9	99322573	99322773	-	1	NA	NA	NA	35857	NM_177775	272636	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0.020000	0.592040	
mm_78714.1	chr9	41474751	41474951	+	1	NA	NA	NA	-42	NR_131931	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.015000	0.547264	
mm_89100.1	chr10	84554746	84554946	+	1	NA	NA	NA	-1508	NR_040658	442847	Mm.128292	NR_040658	ENSMUSG00000097076	Platr7	C330046G13Rik	pluripotency associated transcript 7	ncRNA	0.010000	0.497512	87(GTTTATAGAGAG,+,0.00)
mm_32139.1	chr4	99253751	99253951	+	1	NA	NA	NA	59704	NM_001145967	242557	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.005000	0.482587	
mm_95705.1	chr11	54438389	54438589	+	1	NA	NA	NA	310	NM_173753	216742	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.150000	0.800995	
mm_61564.1	chr7	79660136	79660336	+	1	NA	NA	NA	40	NM_029835	77011	Mm.28132	NM_029835	ENSMUSG00000046591	Ticrr	5730590G19Rik|BC028450|Lrrk1	TOPBP1-interacting checkpoint and replication regulator	protein-coding	0.075000	0.626866	
mm_164499.1	chr16	91534560	91534760	+	1	NA	NA	NA	-12434	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.050000	0.606965	
mm_125934.1	chr15	76247590	76247790	+	1	NA	NA	NA	-501	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.025000	0.572139	
mm_35044.1	chr4	4464028	4464228	-	1	NA	NA	NA	65330	NM_001277919	622019	Mm.246123	NM_001277919		Gm11780	OTTMUSG00000004194	predicted gene 11780	protein-coding	0.010000	0.517413	
mm_99387.1	chr11	102097177	102097377	+	1	NA	NA	NA	4023	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.060000	0.636816	
mm_71620.1	chr8	57332021	57332221	+	1	NA	NA	NA	-314	NR_131041	75996	Mm.399754	NR_131041	ENSMUSG00000097910	5033428I22Rik	-	RIKEN cDNA 5033428I22 gene	ncRNA	0.025000	0.537313	
mm_161384.1	chr14	75190334	75190534	+	1	NA	NA	NA	-51853	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.025000	0.532338	
mm_78919.1	chr9	45039685	45039885	+	1	NA	NA	NA	-2559	NM_007962	14012	Mm.33240	NM_007962	ENSMUSG00000032092	Mpzl2	Eva|Eva1	myelin protein zero-like 2	protein-coding	0.010000	0.412935	
mm_5225.1	chr1	14304609	14304809	-	1	NA	NA	NA	5490	NM_001310459	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.025000	0.537313	75(CCACTTAAAGAC,+,0.00)
mm_38080.1	chr4	134127987	134128187	-	1	NA	NA	NA	666	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.025000	0.557214	
mm_34472.1	chr4	148160568	148160768	+	1	NA	NA	NA	0	NM_176848	230904	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0.110000	0.701493	-80(GGCCTTTAAGAG,-,0.00),-79(GCCTTTAAGAGG,-,0.00),-78(CCTTTAAGAGGC,+,0.00)
mm_76769.1	chr8	95807969	95808169	-	1	NA	NA	NA	-607	NM_001205226	234594	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	0.070000	0.577114	
mm_158262.1	chrX	109013294	109013494	-	1	NA	NA	NA	-14	NM_016710	50887	Mm.298443	NM_016710	ENSMUSG00000031245	Hmgn5	GARP45|NBP-45|Nsbp1	high-mobility group nucleosome binding domain 5	protein-coding	0.065000	0.512438	
mm_92044.1	chr10	62494875	62495075	-	1	NA	NA	NA	-8170	NM_133672	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.035000	0.487562	
mm_97887.1	chr11	83293356	83293556	+	1	NA	NA	NA	26	NR_028364	103729	Mm.102205	NR_028364		AI450353	-	expressed sequence AI450353	ncRNA	0.005000	0.353234	
mm_122593.1	chr14	50924751	50924951	-	1	NA	NA	NA	42	NM_133676	66246	Mm.274791	NM_133676	ENSMUSG00000006289	Osgep	1500019L24Rik|GCPL-1|PRSMG1	O-sialoglycoprotein endopeptidase	protein-coding	0.095000	0.631841	
mm_96375.1	chr11	67237932	67238132	+	1	NA	NA	NA	220	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.010000	0.422886	
mm_33353.1	chr4	129382644	129382844	+	1	NA	NA	NA	-4716	NM_028603	73680	Mm.32997	NM_028603	ENSMUSG00000028807	Zbtb8a	2410081M15Rik|AI480941	zinc finger and BTB domain containing 8a	protein-coding	0.000000	0.532338	
mm_172202.1	chr6	53402757	53402957	+	1	NA	NA	NA	115554	NM_001327821	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.030000	0.487562	
mm_166788.1	chr6	145229339	145229539	-	1	NA	NA	NA	18292	NM_133688	67636	Mm.486359	NM_133688	ENSMUSG00000040370	Lyrm5	4930469P12Rik|AL022899|Etfrf1|Ghiso	LYR motif containing 5	protein-coding	0.015000	0.477612	
mm_102696.1	chr11	65788232	65788432	-	1	NA	NA	NA	27	NM_009157	26398	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	0.125000	0.721393	
mm_20891.1	chr2	148872789	148872989	-	1	NA	NA	NA	2623	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.010000	0.487562	
mm_415.1	chr1	34236533	34236733	+	1	NA	NA	NA	76303	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.100000	0.721393	
mm_87349.1	chr10	43582610	43582810	+	1	NA	NA	NA	3541	NM_009846	12484	Mm.29742	NM_009846	ENSMUSG00000047139	Cd24a	Cd24|HSA|Ly-52|nectadrin	CD24a antigen	protein-coding	0.020000	0.517413	
mm_8601.1	chr1	156034725	156034925	-	1	NA	NA	NA	-8	NM_001160019	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.000000	0.437811	
mm_60137.1	chr7	38029336	38029536	+	1	NA	NA	NA	-9884	NM_011274	19777	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	0.015000	0.487562	-29(GAGTTTATAAGC,-,0.00)
mm_130464.1	chr15	98609313	98609513	-	1	NA	NA	NA	-1780	NM_007405	11512	Mm.157091	NM_007405	ENSMUSG00000022994	Adcy6	AC6|mKIAA0422	adenylate cyclase 6	protein-coding	0.105000	0.756219	-55(GTGCCTTTAAGG,-,0.00),-53(GCCTTTAAGGCG,+,0.00),-52(CCTTTAAGGCGG,+,0.00)
mm_163213.1	chr11	100400813	100401013	-	1	NA	NA	NA	2797	NR_132425	102635937	Mm.421398	NR_132425		Gm12348	OTTMUSG00000006271	predicted gene 12348	ncRNA	0.015000	0.497512	-32(CCTTAAAGAGGT,+,0.00)
mm_33615.1	chr4	132611527	132611727	+	1	NA	NA	NA	-27419	NM_210071	14050	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0.030000	0.522388	
mm_139081.1	chr17	46681905	46682105	+	1	NA	NA	NA	825	NM_001277312	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.015000	0.537313	
mm_86969.1	chr10	25375158	25375358	+	1	NA	NA	NA	15460	NM_001199265	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.020000	0.542289	
mm_58998.1	chr7	19176398	19176598	+	1	NA	NA	NA	77	NM_001347582	72205	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0.040000	0.641791	
mm_32556.1	chr4	109415584	109415784	+	1	NA	NA	NA	37	NM_001145948	230603	Mm.33091	NM_153392	ENSMUSG00000028555	Ttc39a	4922503N01Rik	tetratricopeptide repeat domain 39A	protein-coding	0.000000	0.482587	
mm_86031.1	chr9	113671706	113671906	-	1	NA	NA	NA	36453	NM_001164678	18571	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0.035000	0.552239	
mm_156571.1	chrX	151913743	151913943	+	1	NA	NA	NA	629	NR_029753	723947		NR_029753	ENSMUSG00000065536	Mir98	Mirn98|mir-98|mmu-mir-98	microRNA 98	ncRNA	0.000000	0.353234	-37(GGATCTATAAGC,-,0.00),-27(GCTTTTAGGAGG,+,0.00)
mm_75191.1	chr8	38645703	38645903	-	1	NA	NA	NA	15705	NM_145841	244431	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding	0.000000	0.313433	
mm_57682.1	chr6	128506721	128506921	-	1	NA	NA	NA	19899	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.015000	0.437811	
mm_34729.1	chr4	152178120	152178320	+	1	NA	NA	NA	120	NM_133348	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.120000	0.716418	
mm_8083.1	chr1	135603152	135603352	-	1	NA	NA	NA	-17897	NM_173437	215690	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.025000	0.592040	
mm_139619.1	chr17	57362526	57362726	+	1	NA	NA	NA	3940	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.412935	
mm_39831.1	chr5	30814955	30815155	+	1	NA	NA	NA	414	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.055000	0.711443	
mm_52119.1	chr6	97929715	97929915	+	1	NA	NA	NA	-2	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.020000	0.507463	
mm_166999.1	chr7	46954240	46954440	+	1	NA	NA	NA	4178	NM_001040695	54122	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	0.005000	0.417910	
mm_7039.1	chr1	87101464	87101664	-	1	NA	NA	NA	42	NM_001081082	76768	Mm.58068	NM_001081082	ENSMUSG00000079440	Alpi	2010001C14Rik|Akp6|gIAP	alkaline phosphatase, intestinal	protein-coding	0.005000	0.537313	-78(CCCTTTATAGCC,+,0.00)
mm_72397.1	chr8	81768046	81768246	+	1	NA	NA	NA	425584	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.020000	0.487562	
mm_166869.1	chr7	24709189	24709389	+	1	NA	NA	NA	30	NM_199150	232972	Mm.293074	NM_199150	ENSMUSG00000045587	BC049730	Lypd10	cDNA sequence BC049730	protein-coding	0.025000	0.497512	41(CAGCTTAAAAGG,-,0.00),43(GCTTAAAAGGAC,+,0.00)
mm_126936.1	chr15	91838160	91838360	+	1	NA	NA	NA	-66	NM_207243	239611	Mm.486225	NM_207243		Muc19	MUC-19|sld	mucin 19	protein-coding	0.020000	0.507463	35(GCCTATAAATAC,-,0.00)
mm_65663.1	chr7	28142153	28142353	-	1	NA	NA	NA	12787	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.030000	0.557214	-5(GGCTTGAAAGGG,-,0.00)
mm_165318.1	chr2	103797472	103797672	-	1	NA	NA	NA	68	NM_001111291	53872	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	0.095000	0.706468	
mm_11665.1	chr2	35266705	35266905	+	1	NA	NA	NA	61	NM_001206369	227753	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.010000	0.537313	
mm_11801.1	chr2	43739436	43739636	+	1	NA	NA	NA	-9288	NM_001301832	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.020000	0.427861	-25(GCTTTAAGACAC,+,0.00)
mm_163369.1	chr12	38780981	38781181	+	1	NA	NA	NA	999	NM_007960	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.030000	0.492537	
mm_113369.1	chr13	33001954	33002154	+	1	NA	NA	NA	-2487	NM_009256	20723	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0.015000	0.393035	
mm_90315.1	chr10	127063433	127063633	+	1	NA	NA	NA	-70	NM_009870	12567	Mm.6839	NM_009870	ENSMUSG00000006728	Cdk4	Crk3	cyclin-dependent kinase 4	protein-coding	0.085000	0.711443	
mm_23508.1	chr3	60529474	60529674	+	1	NA	NA	NA	28395	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.278607	
mm_101502.1	chr11	32199245	32199445	-	1	NA	NA	NA	934	NM_001134458	16199	Mm.384	NM_008374	ENSMUSG00000020279	Il9r	-	interleukin 9 receptor	protein-coding	0.010000	0.616915	
mm_82222.1	chr9	3024576	3024776	-	1	NA	NA	NA	14067	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.015000	0.353234	
mm_31109.1	chr4	42921701	42921901	+	1	NA	NA	NA	4550	NM_172690	230085	Mm.240965	NM_172690	ENSMUSG00000036062	Phf24	GINIP|N28178	PHD finger protein 24	protein-coding	0.010000	0.427861	
mm_72111.1	chr8	71623943	71624143	+	1	NA	NA	NA	7063	NR_106035	102466799		NR_106035	ENSMUSG00000098976	Mir6769b	Gm27546|mmu-mir-6769b	microRNA 6769b	ncRNA	0.005000	0.407960	
mm_65458.1	chr7	25466251	25466451	-	1	NA	NA	NA	11274	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.015000	0.522388	
mm_72324.1	chr8	78509329	78509529	+	1	NA	NA	NA	101	NM_001282108	76775	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0.070000	0.592040	
mm_118815.1	chr14	25466709	25466909	+	1	NA	NA	NA	7624	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.015000	0.552239	
mm_143975.1	chr17	87433845	87434045	-	1	NA	NA	NA	-6204	NM_029298	75467	Mm.50108	NM_029298	ENSMUSG00000036557	Stpg4	1700011E24Rik|GSE	sperm tail PG rich repeat containing 4	protein-coding	0.005000	0.338308	
mm_34554.1	chr4	149614025	149614225	+	1	NA	NA	NA	27657	NM_023051	65945	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0.040000	0.537313	
mm_10793.1	chr2	24349391	24349591	+	1	NA	NA	NA	4120	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.020000	0.522388	
mm_73327.1	chr8	105279235	105279435	+	1	NA	NA	NA	2888	NM_030152	78688	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0.040000	0.587065	
mm_96103.1	chr11	60537600	60537800	+	1	NA	NA	NA	17	NM_172943	268420	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.110000	0.651741	
mm_121544.1	chr14	122474468	122474668	+	1	NA	NA	NA	631	NR_045046	69248	Mm.235369	NR_045046	ENSMUSG00000085555	2610035F20Rik	-	RIKEN cDNA 2610035F20 gene	ncRNA	0.055000	0.542289	
mm_39532.1	chr5	21375344	21375544	+	1	NA	NA	NA	2771	NM_008013	14190	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.025000	0.482587	
mm_136044.1	chr16	78376688	78376888	-	1	NA	NA	NA	22	NM_009770	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.185000	0.791045	
mm_33569.1	chr4	132260430	132260630	+	1	NA	NA	NA	1019	NM_020273	56809	Mm.103489	NM_020273	ENSMUSG00000028901	Gmeb1	1110050A04Rik|AI256615|AI481278	glucocorticoid modulatory element binding protein 1	protein-coding	0.015000	0.497512	
mm_79749.1	chr9	62367950	62368150	+	1	NA	NA	NA	26707	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.040000	0.592040	
mm_64427.1	chr7	142577491	142577691	+	1	NA	NA	NA	-444	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.035000	0.577114	-41(CTCTCTAAGAGC,-,0.00)
mm_95305.1	chr11	46222489	46222689	+	1	NA	NA	NA	-9546	NR_105955	102465598		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0.050000	0.567164	
mm_155613.1	chrX	83043357	83043557	+	1	NA	NA	NA	94587	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.005000	0.427861	
mm_104561.1	chr11	96829391	96829591	-	1	NA	NA	NA	11	NM_001130450	18023	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	0.080000	0.671642	-35(TCGCTTTTAAGG,-,0.00),-34(CGCTTTTAAGGG,-,0.00),-33(GCTTTTAAGGGT,+,0.00)
mm_125626.1	chr15	61989299	61989499	+	1	NA	NA	NA	4058	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.030000	0.552239	
mm_1148.1	chr1	60755377	60755577	+	1	NA	NA	NA	9089	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.005000	0.363184	
mm_52800.1	chr6	121336725	121336925	+	1	NA	NA	NA	-6251	NM_001347433	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.025000	0.567164	
mm_13413.1	chr2	104112130	104112330	+	1	NA	NA	NA	-10539	NM_026634	68243	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0.005000	0.348259	
mm_121730.1	chr14	18238894	18239094	-	1	NA	NA	NA	112	NM_011584	353187	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0.115000	0.746269	
mm_76480.1	chr8	85550758	85550958	-	1	NA	NA	NA	4413	NM_019794	56445	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0.010000	0.447761	
mm_29873.1	chr3	130842036	130842236	-	1	NA	NA	NA	-111738	NM_001005859	68436	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.005000	0.467662	-15(CTCTTTAAAAGC,-,0.00),-14(TCTTTAAAAGCC,+,0.00)
mm_75778.1	chr8	69996181	69996381	-	1	NA	NA	NA	103	NM_001286450	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.100000	0.656716	
mm_137680.1	chr17	28817642	28817842	+	1	NA	NA	NA	16616	NM_001081315	268936	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0.050000	0.616915	
mm_17072.1	chr2	22744964	22745164	-	1	NA	NA	NA	-29263	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.050000	0.522388	
mm_21348.1	chr2	157113304	157113504	-	1	NA	NA	NA	21818	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.005000	0.368159	
mm_19408.1	chr2	91675967	91676167	-	1	NA	NA	NA	22859	NM_146124	228359	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	0.010000	0.562189	
mm_132043.1	chr16	27450290	27450490	+	1	NA	NA	NA	61434	NM_001289436	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.005000	0.383085	
mm_3048.1	chr1	134040726	134040926	+	1	NA	NA	NA	3311	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.035000	0.592040	
mm_92480.1	chr10	78295286	78295486	-	1	NA	NA	NA	44821	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.010000	0.597015	
mm_120589.1	chr14	69840372	69840572	+	1	NA	NA	NA	65	NM_028526	73523	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0.015000	0.482587	
mm_28303.1	chr3	89214251	89214451	-	1	NA	NA	NA	-16	NM_013604	17827	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	0.090000	0.706468	
mm_73361.1	chr8	105594998	105595198	+	1	NA	NA	NA	-10131	NM_001081241	75687	Mm.41261	NM_001081241	ENSMUSG00000038604	Fam65a	2310066E14Rik|AI837433	family with sequence similarity 65, member A	protein-coding	0.030000	0.537313	
mm_56969.1	chr6	120187586	120187786	-	1	NA	NA	NA	-6137	NM_001347432	29862	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.030000	0.572139	
mm_156658.1	chrX	157711272	157711472	+	1	NA	NA	NA	12399	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.005000	0.348259	
mm_7751.1	chr1	131097677	131097877	-	1	NA	NA	NA	66	NM_008551	17164	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.145000	0.771144	-94(TCCCCTTTAAGG,-,0.00),-92(CCCTTTAAGGAC,+,0.00)
mm_155284.1	chrX	61183172	61183372	+	1	NA	NA	NA	2286	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.005000	0.427861	
mm_50124.1	chr6	41536400	41536600	+	1	NA	NA	NA	14724	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.467662	
mm_171408.1	chr4	129255517	129255717	+	1	NA	NA	NA	5787	NM_001285867	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.015000	0.527363	
mm_125628.1	chr15	61989348	61989548	+	1	NA	NA	NA	4107	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.035000	0.577114	
mm_87589.1	chr10	57486416	57486616	+	1	NA	NA	NA	131	NM_008297	15500	Mm.261395	NM_008297	ENSMUSG00000019878	Hsf2	AI661205	heat shock factor 2	protein-coding	0.105000	0.641791	
mm_121859.1	chr14	20674020	20674220	-	1	NA	NA	NA	-201	NM_172596	218811	Mm.173119	NM_172596	ENSMUSG00000039367	Sec24c	2610204K03Rik|mKIAA0079	Sec24 related gene family, member C (S. cerevisiae)	protein-coding	0.030000	0.378109	
mm_43976.1	chr5	146260906	146261106	+	1	NA	NA	NA	29331	NM_153599	264064	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.090000	0.572139	
mm_47645.1	chr5	125389119	125389319	-	1	NA	NA	NA	798	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.075000	0.601990	
mm_117371.1	chr13	71961604	71961804	-	1	NA	NA	NA	2019	NM_010573	16371	Mm.316056	NM_010573	ENSMUSG00000060969	Irx1	-	Iroquois related homeobox 1 (Drosophila)	protein-coding	0.035000	0.298507	19(CCTTTTAAAAAT,+,0.00)
mm_150584.1	chr19	40660077	40660277	+	1	NA	NA	NA	407	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.030000	0.437811	
mm_3002.1	chr1	133255604	133255804	+	1	NA	NA	NA	9607	NM_182930	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding	0.010000	0.472637	
mm_135099.1	chr16	35363626	35363826	-	1	NA	NA	NA	192	NM_133704	317717	Mm.259164	NM_133704	ENSMUSG00000034473	Sec22a	1810005C06Rik|Sec22l2	SEC22 homolog A, vesicle trafficking protein	protein-coding	0.095000	0.686567	
mm_108221.1	chr12	77130741	77130941	+	1	NA	NA	NA	-107263	NM_001252614	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.025000	0.492537	
mm_19455.1	chr2	92370880	92371080	-	1	NA	NA	NA	77	NM_001290774	228366	Mm.31158	NM_172670	ENSMUSG00000040434	Large2	5730485C17Rik|AI891893|Gyltl1b|Largel|mKIAA4105	LARGE xylosyl- and glucuronyltransferase 2	protein-coding	0.075000	0.681592	
mm_69932.1	chr7	142060907	142061107	-	1	NA	NA	NA	27	NM_028308	101513	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	0.175000	0.766169	
mm_119623.1	chr14	51128964	51129164	+	1	NA	NA	NA	-4	NM_030098	78416	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	0.010000	0.492537	
mm_37861.1	chr4	132303074	132303274	-	1	NA	NA	NA	182	NM_001081651	242681	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	0.100000	0.651741	
mm_141978.1	chr17	35162225	35162425	-	1	NA	NA	NA	2552	NM_001199044	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.045000	0.542289	
mm_83804.1	chr9	53248012	53248212	-	1	NA	NA	NA	0	NM_029936	77591	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	0.100000	0.646766	
mm_165762.1	chr3	118663411	118663611	+	1	NA	NA	NA	101333	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.005000	0.407960	
mm_66200.1	chr7	34230219	34230419	-	1	NA	NA	NA	17	NM_008155	14751	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	0.125000	0.716418	
mm_47484.1	chr5	123865386	123865586	-	1	NA	NA	NA	30	NM_030701	80885	Mm.440567	NM_030701	ENSMUSG00000045502	Hcar2	Gpr109a|Gpr109b|HM74|Niacr1|PUMA-G|Pumag|mHM74b	hydroxycarboxylic acid receptor 2	protein-coding	0.025000	0.497512	
mm_62271.1	chr7	99536357	99536557	+	1	NA	NA	NA	971	NM_177231	109689	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	0.015000	0.542289	
mm_91718.1	chr10	44458601	44458801	-	1	NA	NA	NA	47	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.100000	0.641791	
mm_5008.1	chr1	192190696	192190896	+	1	NA	NA	NA	19	NM_010600	16510	Mm.4489	NM_010600	ENSMUSG00000058248	Kcnh1	EAG1|Kv10.1|M-eag	potassium voltage-gated channel, subfamily H (eag-related), member 1	protein-coding	0.150000	0.805970	
mm_76197.1	chr8	82419995	82420195	-	1	NA	NA	NA	-17509	NM_008357	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.005000	0.472637	
mm_37661.1	chr4	129058538	129058738	-	1	NA	NA	NA	367	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.135000	0.776119	
mm_107449.1	chr12	36677234	36677434	+	1	NA	NA	NA	-138871	NR_039558	100628578		NR_039558	ENSMUSG00000092998	Mir5099	mmu-mir-5099|mu-mir-5099	microRNA 5099	ncRNA	0.005000	0.447761	
mm_105761.1	chr11	109573553	109573753	-	1	NA	NA	NA	29942	NM_001166177	74008	Mm.482224	NM_028710	ENSMUSG00000020604	Arsg	6330406P08Rik|AI846872	arylsulfatase G	protein-coding	0.015000	0.517413	20(CAGTCTAAAAGA,-,0.00)
mm_136026.1	chr16	76372959	76373159	-	1	NA	NA	NA	-10	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.170000	0.781095	
mm_166602.1	chr6	67533353	67533553	+	1	NA	NA	NA	2369	NM_020047	56753	Mm.439913	NM_020047	ENSMUSG00000051397	Tacstd2	C80403|EGP-1|GA733-1|Ly97|TROP2	tumor-associated calcium signal transducer 2	protein-coding	0.015000	0.512438	
mm_1979.1	chr1	86582812	86583012	+	1	NA	NA	NA	-411	NM_008801	18582	Mm.12925	NM_008801	ENSMUSG00000026239	Pde6d	AI841218|PrBP/delta	phosphodiesterase 6D, cGMP-specific, rod, delta	protein-coding	0.020000	0.507463	
mm_15204.1	chr2	154212876	154213076	+	1	NA	NA	NA	-10766	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.020000	0.577114	
mm_18011.1	chr2	38287195	38287395	-	1	NA	NA	NA	89	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.145000	0.776119	
mm_179.1	chr1	13846504	13846704	+	1	NA	NA	NA	-59675	NR_004447	433273	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.040000	0.517413	
mm_28820.1	chr3	96283740	96283940	-	1	NA	NA	NA	10129	NM_010186	14129	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0.035000	0.592040	
mm_115888.1	chr13	21983478	21983678	-	1	NA	NA	NA	2384	NM_001162929	195236	Mm.204664	NM_001162928	ENSMUSG00000016982	Pom121l2	Gm24	POM121 membrane glycoprotein-like 2 (rat)	protein-coding	0.010000	0.492537	
mm_172404.1	chr7	145034106	145034306	-	1	NA	NA	NA	-94281	NM_007631	12443	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.015000	0.497512	-4(CCTTTTATAAGT,+,0.00)
mm_87316.1	chr10	42827758	42827958	+	1	NA	NA	NA	-32654	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.015000	0.427861	-12(GTCTTTAAAGTG,+,0.00),88(TCCTATATGGGC,+,0.00)
mm_172451.1	chr7	32868029	32868229	-	1	NA	NA	NA	-38476	NM_001281524	668526	Mm.326965	NM_001281524	ENSMUSG00000098094	Scgb2b17	Abpbg17|EG668526|Gm9223	secretoglobin, family 2B, member 17	protein-coding	0.060000	0.577114	-95(CGGTTTTAATGG,-,0.00)
mm_142400.1	chr17	45433556	45433756	-	1	NA	NA	NA	51	NM_152810	71702	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0.110000	0.621891	
mm_74457.1	chr8	4214469	4214669	-	1	NA	NA	NA	2743	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.015000	0.572139	
mm_160829.1	chr11	46311879	46312079	-	1	NA	NA	NA	379	NM_001252460	76884	Mm.154358	NM_133769	ENSMUSG00000020340	Cyfip2	1500004I01Rik|6430511D02Rik|AA930218|AU022376|Pir121|mKIAA1168	cytoplasmic FMR1 interacting protein 2	protein-coding	0.075000	0.691542	70(CGCCCTAAAAAG,-,0.00),72(CCCTAAAAAGAG,+,0.00)
mm_153464.1	chr19	41263937	41264137	-	1	NA	NA	NA	-33	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.175000	0.815920	
mm_124934.1	chr15	12215104	12215304	+	1	NA	NA	NA	10110	NM_172958	268783	Mm.54460	NM_172958	ENSMUSG00000039458	Mtmr12	3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682	myotubularin related protein 12	protein-coding	0.015000	0.482587	
mm_167425.1	chr8	113971888	113972088	+	1	NA	NA	NA	-123149	NM_172466	208936	Mm.167471	NM_172466	ENSMUSG00000053399	Adamts18	9630038L21|ADAMTS21|E130314N14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	protein-coding	0.020000	0.472637	
mm_37672.1	chr4	129121513	129121713	-	1	NA	NA	NA	134	NM_001130419	15444	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	0.045000	0.651741	
mm_19189.1	chr2	84421296	84421496	-	1	NA	NA	NA	3870	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.005000	0.427861	
mm_13855.1	chr2	119694924	119695124	+	1	NA	NA	NA	19956	NM_030112	76246	Mm.33437	NM_030112	ENSMUSG00000027304	Rtf1	2900005O08Rik|6530416A09Rik|AI853581|AU043144|AW553985|Gtl7|cbp82	RTF1, Paf1/RNA polymerase II complex component	protein-coding	0.000000	0.407960	67(TAATTTAAAAGG,-,0.00)
mm_66443.1	chr7	44849760	44849960	-	1	NA	NA	NA	-147	NM_001253920	67605	Mm.148007	NM_026270	ENSMUSG00000011096	Akt1s1	1110012J22Rik|AI227026|Lobe|Lobel|PRAS40	AKT1 substrate 1 (proline-rich)	protein-coding	0.055000	0.542289	
mm_172280.1	chr6	88839480	88839680	-	1	NA	NA	NA	2355	NM_030251	80283	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.025000	0.587065	
mm_126806.1	chr15	87625153	87625353	+	1	NA	NA	NA	23	NM_134096	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.135000	0.771144	
mm_2479.1	chr1	105846840	105847040	+	1	NA	NA	NA	66217	NM_009399	21934	Mm.6251	NM_009399	ENSMUSG00000026321	Tnfrsf11a	Ly109|ODFR|OFE|Rank|TRANCE-R|mRANK	tumor necrosis factor receptor superfamily, member 11a, NFKB activator	protein-coding	0.005000	0.383085	-71(GCTTATAAAACC,+,0.00),-56(TAGCATAAAAGC,-,0.00)
mm_131663.1	chr16	20629718	20629918	+	1	NA	NA	NA	-33	NM_177942	107522	Mm.263319	NM_025462	ENSMUSG00000022842	Ece2	1810009K13Rik|6330509A19Rik|9630025D12Rik|BB127715|Ece-2	endothelin converting enzyme 2	protein-coding	0.115000	0.751244	
mm_109520.1	chr12	111454375	111454575	+	1	NA	NA	NA	11814	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.010000	0.542289	
mm_100420.1	chr11	119436778	119436978	+	1	NA	NA	NA	46406	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.030000	0.592040	
mm_170434.1	chr18	78696311	78696511	-	1	NA	NA	NA	-99461	NM_030683	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.045000	0.532338	
mm_166466.1	chr5	142733942	142734142	+	1	NA	NA	NA	31941	NM_146257	243328	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.005000	0.477612	
mm_109888.1	chr12	5375623	5375823	-	1	NA	NA	NA	-41	NM_001164493	208439	Mm.388281	NM_001164493	ENSMUSG00000020627	Klhl29	A230106N14Rik|Gm68|Kbtbd9|mKIAA1921	kelch-like 29	protein-coding	0.145000	0.766169	
mm_87786.1	chr10	60296923	60297123	+	1	NA	NA	NA	12562	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.005000	0.388060	
mm_123090.1	chr14	55758376	55758576	-	1	NA	NA	NA	-52	NM_009894	12684	Mm.466766	NM_009894	ENSMUSG00000022219	Cideb	1110030C18Rik|AI790179|CIDE-B	cell death-inducing DNA fragmentation factor, alpha subunit-like effector B	protein-coding	0.030000	0.507463	
mm_170830.1	chr2	176927704	176927904	-	1	NA	NA	NA	9	NM_001305136	100504263	Mm.379980	NM_001305136	ENSMUSG00000078894	2210418O10Rik	Gm6182	predicted gene 2210418O10Rik	protein-coding	0.005000	0.507463	
mm_48513.1	chr5	142822716	142822916	-	1	NA	NA	NA	-5429	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.045000	0.512438	
mm_153728.1	chr19	44407716	44407916	-	1	NA	NA	NA	-107	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.035000	0.616915	
mm_105513.1	chr11	106255974	106256174	-	1	NA	NA	NA	-111	NM_008950	19184	Mm.272361	NM_008950	ENSMUSG00000020708	Psmc5	mSUG1	protease (prosome, macropain) 26S subunit, ATPase 5	protein-coding	0.065000	0.552239	
mm_39673.1	chr5	25515944	25516144	+	1	NA	NA	NA	-23	NM_198621	242891	Mm.291521	NM_198621	ENSMUSG00000038044	Cct8l1	Gm443	chaperonin containing TCP1, subunit 8 (theta)-like 1	protein-coding	0.010000	0.472637	
mm_92540.1	chr10	79645638	79645838	-	1	NA	NA	NA	0	NM_001033473	382384	Mm.244510	NM_001033473	ENSMUSG00000035963	Odf3l2	Gm1157	outer dense fiber of sperm tails 3-like 2	protein-coding	0.020000	0.636816	
mm_156738.1	chrX	159942862	159943062	+	1	NA	NA	NA	269	NM_001290664	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.000000	0.482587	
mm_77833.1	chr9	4309806	4310006	+	1	NA	NA	NA	90	NM_026962	69149	Mm.25946	NM_026962	ENSMUSG00000025893	Kbtbd3	2200003A07Rik|Bklhd3	kelch repeat and BTB (POZ) domain containing 3	protein-coding	0.045000	0.577114	
mm_36728.1	chr4	99120775	99120975	-	1	NA	NA	NA	40	NM_001290636	67299	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0.160000	0.786070	
mm_18884.1	chr2	76672984	76673184	-	1	NA	NA	NA	14	NM_010222	14231	Mm.24720	NM_010222	ENSMUSG00000002732	Fkbp7	23kDa|FKBP-7|FKBP23	FK506 binding protein 7	protein-coding	0.050000	0.587065	
mm_24431.1	chr3	90541082	90541282	+	1	NA	NA	NA	-41	NM_026416	67860	Mm.331185	NM_026416	ENSMUSG00000074457	S100a16	2300002L21Rik|AI325039|AI663996|DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding	0.030000	0.567164	
mm_64424.1	chr7	142577290	142577490	+	1	NA	NA	NA	-243	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.010000	0.532338	
mm_148195.1	chr18	79066642	79066842	-	1	NA	NA	NA	42649	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.020000	0.393035	
mm_10855.1	chr2	25054283	25054483	+	1	NA	NA	NA	4	NM_001177655	56876	Mm.42956	NM_020276	ENSMUSG00000006476	Nsmf	Jacob|Nelf	NMDA receptor synaptonuclear signaling and neuronal migration factor	protein-coding	0.070000	0.656716	-97(ACTTTTATGCCC,+,0.00)
mm_170868.1	chr2	18461032	18461232	+	1	NA	NA	NA	-68302	NM_007869	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.015000	0.532338	68(TCCTTTATAAGC,-,0.00),70(CTTTATAAGCGC,+,0.00)
mm_41417.1	chr5	90868230	90868430	+	1	NA	NA	NA	-22915	NM_008176	14825	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.005000	0.432836	
mm_151918.1	chr19	5799724	5799924	-	1	NA	NA	NA	2848	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.020000	0.482587	
mm_141740.1	chr17	34122243	34122443	-	1	NA	NA	NA	264	NM_001204973	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.105000	0.736318	
mm_129618.1	chr15	80014234	80014434	-	1	NA	NA	NA	474	NM_011057	18591	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.090000	0.641791	
mm_91769.1	chr10	51527220	51527420	-	1	NA	NA	NA	36422	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.015000	0.432836	-47(CCCTTTAAGAGC,+,0.00),-47(CCCTTTAAGAGC,-,0.00),-46(CCTTTAAGAGCA,+,0.00)
mm_45439.1	chr5	67269402	67269602	-	1	NA	NA	NA	8937	NM_030108	67878	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	0.020000	0.567164	
mm_122683.1	chr14	52014779	52014979	-	1	NA	NA	NA	-321	NM_001253695	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.065000	0.696517	
mm_109981.1	chr12	12941736	12941936	-	1	NA	NA	NA	0	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.075000	0.631841	
mm_165848.1	chr4	8822037	8822237	+	1	NA	NA	NA	131731	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.005000	0.313433	
mm_116497.1	chr13	44947076	44947276	-	1	NA	NA	NA	54920	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.010000	0.467662	40(CTTTATAGAGGC,+,0.00)
mm_170578.1	chr1	95498513	95498713	+	1	NA	NA	NA	168981	NM_009183	20452	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.055000	0.582090	
mm_4832.1	chr1	186587233	186587433	+	1	NA	NA	NA	-28652	NR_131158	320449	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.025000	0.477612	
mm_95057.1	chr11	32400788	32400988	+	1	NA	NA	NA	53077	NM_177364	268396	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.000000	0.472637	
mm_19268.1	chr2	85033815	85034015	-	1	NA	NA	NA	1919	NM_145526	228139	Mm.440375	NM_145526	ENSMUSG00000027071	P2rx3	4930513E20Rik|P2X3	purinergic receptor P2X, ligand-gated ion channel, 3	protein-coding	0.000000	0.353234	
mm_75862.1	chr8	70723496	70723696	-	1	NA	NA	NA	-468	NM_001310465	110385	Mm.255180	NM_201607	ENSMUSG00000031842	Pde4c	Dpde1|E130301F19Rik|dunce	phosphodiesterase 4C, cAMP specific	protein-coding	0.010000	0.557214	
mm_20150.1	chr2	121551182	121551382	-	1	NA	NA	NA	44559	NM_001290986	241627	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	0.025000	0.582090	
mm_92470.1	chr10	78038183	78038383	-	1	NA	NA	NA	-4004	NM_001081695	54427	Mm.13433	NM_019448	ENSMUSG00000000730	Dnmt3l	D6Ertd14e|ecat7	DNA (cytosine-5-)-methyltransferase 3-like	protein-coding	0.015000	0.542289	
mm_39314.1	chr5	8056470	8056670	+	1	NA	NA	NA	28	NM_001080974	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.130000	0.771144	
mm_78914.1	chr9	44983561	44983761	+	1	NA	NA	NA	1875	NM_013487	12500	Mm.4527	NM_013487	ENSMUSG00000032094	Cd3d	T3d	CD3 antigen, delta polypeptide	protein-coding	0.005000	0.422886	
mm_97031.1	chr11	72266340	72266540	+	1	NA	NA	NA	164	NM_001004148	237831	Mm.340778	NM_001004148	ENSMUSG00000020805	Slc13a5	Indy|NaC2/NaCT|Nact|mINDY	solute carrier family 13 (sodium-dependent citrate transporter), member 5	protein-coding	0.070000	0.587065	
mm_167555.1	chr9	35608223	35608423	-	1	NA	NA	NA	3562	NM_020264	56872	Mm.390143	NM_020264	ENSMUSG00000032099	Pate4	9530004K16Rik|Pate-B|Svs7	prostate and testis expressed 4	protein-coding	0.015000	0.402985	
mm_86436.1	chr10	3872712	3872912	+	1	NA	NA	NA	145	NM_001033253	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.025000	0.557214	
mm_91294.1	chr10	24915536	24915736	-	1	NA	NA	NA	4972	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.025000	0.507463	
mm_138493.1	chr17	35200356	35200556	+	1	NA	NA	NA	1551	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.045000	0.587065	
mm_49301.1	chr6	17748913	17749113	+	1	NA	NA	NA	-157	NM_001083315	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.020000	0.437811	
mm_116044.1	chr13	27247833	27248033	-	1	NA	NA	NA	5503	NM_008865	18776	Mm.37203	NM_008865	ENSMUSG00000038891	Prl3b1	Csh2|Ghd8|PL|Pl-2|Pl2|mPL-II|mplII	prolactin family 3, subfamily b, member 1	protein-coding	0.000000	0.457711	
mm_170423.1	chr18	7181000	7181200	+	1	NA	NA	NA	116801	NM_001081393	74934	Mm.107918	NM_001081393	ENSMUSG00000061802	Armc4	4930463I21Rik|b2b227.1Clo|b2b643Clo	armadillo repeat containing 4	protein-coding	0.010000	0.522388	-34(CCCCTTATAAGC,-,0.00),-32(CCTTATAAGCAT,+,0.00)
mm_24734.1	chr3	95283076	95283276	+	1	NA	NA	NA	241	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.035000	0.547264	
mm_10119.1	chr2	3730965	3731165	+	1	NA	NA	NA	17607	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.030000	0.512438	-34(TCCTTTATAAGG,-,0.00),-32(CTTTATAAGGCG,+,0.00)
mm_9885.1	chr1	186624200	186624400	-	1	NA	NA	NA	-65619	NR_131158	320449	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.000000	0.258706	
mm_152858.1	chr19	24191379	24191579	-	1	NA	NA	NA	-17339	NM_001198985	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.005000	0.457711	
mm_37521.1	chr4	124693456	124693656	-	1	NA	NA	NA	-2	NM_026031	67205	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11l	2700082D03Rik|CGI-94|Cgi94|Utp11	UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	protein-coding	0.070000	0.606965	
mm_172010.1	chr6	109505219	109505419	-	1	NA	NA	NA	676678	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.065000	0.507463	45(AACTTTAAATGG,-,0.00)
mm_70734.1	chr8	18882136	18882336	+	1	NA	NA	NA	35957	NM_026792	52123	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	0.005000	0.348259	
mm_7869.1	chr1	132707166	132707366	-	1	NA	NA	NA	60	NM_001160318	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	0.045000	0.562189	
mm_172863.1	chr9	40803424	40803624	+	1	NA	NA	NA	2251	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.015000	0.412935	19(GCCTTTATAGTC,+,0.00)
mm_59190.1	chr7	24475424	24475624	+	1	NA	NA	NA	-6499	NM_153112	260299	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	0.025000	0.582090	
mm_742.1	chr1	43503140	43503340	+	1	NA	NA	NA	57489	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.005000	0.308458	76(TTTTTAATAGAC,+,0.00)
mm_32930.1	chr4	119232826	119233026	+	1	NA	NA	NA	11	NM_019782	56401	Mm.27961	NM_019782	ENSMUSG00000028641	P3h1	2410024C15Rik|Gros1|Lepre1	prolyl 3-hydroxylase 1	protein-coding	0.090000	0.661692	
mm_168043.1	chrY	90804449	90804649	+	1	NA	NA	NA	19107	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.030000	0.402985	
mm_107173.1	chr12	24713632	24713832	+	1	NA	NA	NA	5478	NM_009104	20135	Mm.99	NM_009104	ENSMUSG00000020649	Rrm2	AA407299|R2	ribonucleotide reductase M2	protein-coding	0.010000	0.328358	
mm_147503.1	chr18	50010599	50010799	-	1	NA	NA	NA	31272	NM_001177759	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.005000	0.532338	
mm_172664.1	chr8	43180125	43180325	-	1	NA	NA	NA	-2897	NM_001160412	622117	Mm.390031	NM_001160412	ENSMUSG00000091490	Triml2	EG622117|Tu4	tripartite motif family-like 2	protein-coding	0.000000	0.452736	
mm_117621.1	chr13	91861228	91861428	-	1	NA	NA	NA	15557	NM_198415	76722	Mm.316438	NM_198415	ENSMUSG00000021622	Ckmt2	2300008A19Rik|ScCKmit	creatine kinase, mitochondrial 2	protein-coding	0.045000	0.601990	
mm_28723.1	chr3	95684441	95684641	-	1	NA	NA	NA	3376	NM_144899	229595	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.035000	0.681592	
mm_22627.1	chr3	14766438	14766638	+	1	NA	NA	NA	11922	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.010000	0.512438	
mm_89776.1	chr10	100590428	100590628	+	1	NA	NA	NA	-1269	NM_175128	68281	Mm.268474	NM_175128	ENSMUSG00000046567	4930430F08Rik	4930571E09Rik|A730088G13Rik|AW551239|C430008C19Rik	RIKEN cDNA 4930430F08 gene	protein-coding	0.000000	0.402985	
mm_95726.1	chr11	54596042	54596242	+	1	NA	NA	NA	-4	NM_001252498	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.005000	0.442786	
mm_84171.1	chr9	59948375	59948575	-	1	NA	NA	NA	1604	NM_013708	23958	Mm.103641	NM_013708	ENSMUSG00000032292	Nr2e3	A930035N01Rik|PNR|RNR|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding	0.020000	0.547264	
mm_118758.1	chr14	22378070	22378270	+	1	NA	NA	NA	164628	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.005000	0.343284	
mm_107192.1	chr12	25254684	25254884	+	1	NA	NA	NA	125610	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.000000	0.467662	
mm_46389.1	chr5	104021732	104021932	-	1	NA	NA	NA	-36	NM_053262	114664	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0.055000	0.537313	-14(TCTTTAATAGGG,+,0.00)
mm_162974.1	chr11	16752100	16752300	+	1	NA	NA	NA	-3	NM_207655	13649	Mm.8534	NM_007912	ENSMUSG00000020122	Egfr	9030024J15Rik|AI552599|Erbb|Errb1|Errp|Wa5|wa-2|wa2	epidermal growth factor receptor	protein-coding	0.070000	0.641791	
mm_139525.1	chr17	56638165	56638365	+	1	NA	NA	NA	10122	NM_175350	106757	Mm.23401	NM_175350	ENSMUSG00000040828	Catsperd	4921529N20Rik|4933402B14Rik|619718|AW045609|Gm6095|Tmem146	catsper channel auxiliary subunit delta	protein-coding	0.010000	0.497512	
mm_21795.1	chr2	164857713	164857913	-	1	NA	NA	NA	-105	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.040000	0.592040	
mm_104503.1	chr11	95960191	95960391	-	1	NA	NA	NA	3092	NR_037223	100526468		NR_037223	ENSMUSG00000093358	Mir3063	mmu-mir-3063	microRNA 3063	ncRNA	0.000000	0.432836	
mm_89362.1	chr10	88433904	88434104	+	1	NA	NA	NA	-25583	NM_011517	20962	Mm.297977	NM_011517	ENSMUSG00000020059	Sycp3	Cor1|Scp3	synaptonemal complex protein 3	protein-coding	0.015000	0.477612	
mm_146147.1	chr18	74787014	74787214	+	1	NA	NA	NA	7902	NM_177470	52538	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	0.035000	0.452736	
mm_120217.1	chr14	62760389	62760589	+	1	NA	NA	NA	-12	NR_045503	71000	Mm.399410	NR_045503	ENSMUSG00000097775	4931440J10Rik	-	RIKEN cDNA 4931440J10 gene	ncRNA	0.115000	0.766169	
mm_107196.1	chr12	25316092	25316292	+	1	NA	NA	NA	187018	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.000000	0.517413	
mm_159455.1	chr3	146943770	146943970	+	1	NA	NA	NA	91503	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.010000	0.462687	
mm_110349.1	chr12	37081767	37081967	-	1	NA	NA	NA	-26679	NM_008584	17286	Mm.341398	NM_008584	ENSMUSG00000036144	Meox2	AI528662|Gax|Mox-2|Mox2	mesenchyme homeobox 2	protein-coding	0.000000	0.353234	
mm_77239.1	chr8	115705088	115705288	-	1	NA	NA	NA	1706	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.000000	0.373134	
mm_83593.1	chr9	48480490	48480690	-	1	NA	NA	NA	21	NM_024233	104444	Mm.21911	NM_024233	ENSMUSG00000032026	Rexo2	1810038D15Rik|AW107347|Rex2|Sfn|Smfn	RNA exonuclease 2	protein-coding	0.135000	0.741294	
mm_171483.1	chr4	146067449	146067649	+	1	NA	NA	NA	25	NR_030771	627585	Mm.424988	NM_001039233		Gm13034	OTTMUSG00000010105	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene	pseudo	0.140000	0.736318	
mm_49810.1	chr6	36389064	36389264	+	1	NA	NA	NA	-930	NR_015589	319472	Mm.226434	NR_015589	ENSMUSG00000073154	9330158H04Rik	-	RIKEN cDNA 9330158H04 gene	ncRNA	0.025000	0.606965	39(CCCCTTATACCC,+,0.00)
mm_28541.1	chr3	92824941	92825141	-	1	NA	NA	NA	2206	NM_028629	433619	Mm.28359	NM_028629	ENSMUSG00000059832	Kprp	1110001M24Rik|AA589586	keratinocyte expressed, proline-rich	protein-coding	0.025000	0.552239	
mm_111850.1	chr12	107938967	107939167	-	1	NA	NA	NA	64347	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.045000	0.512438	
mm_152832.1	chr19	23246548	23246748	-	1	NA	NA	NA	25951	NM_001252685	226026	Mm.23267	NM_153808	ENSMUSG00000024943	Smc5	MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5	structural maintenance of chromosomes 5	protein-coding	0.010000	0.412935	-81(GTGCATTAAAAG,-,0.00),-79(GCATTAAAAGAG,+,0.00)
mm_134164.1	chr16	10795847	10796047	-	1	NA	NA	NA	876	NM_013637	19118	Mm.42733	NM_013637	ENSMUSG00000022501	Prm1	Prm-1	protamine 1	protein-coding	0.005000	0.497512	
mm_106949.1	chr12	8771356	8771556	+	1	NA	NA	NA	60	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.060000	0.616915	
mm_79476.1	chr9	56950816	56951016	+	1	NA	NA	NA	-8	NM_178374	66069	Mm.220984	NM_178374	ENSMUSG00000055334	Snupn	0610031A09Rik|Rnut1|Snupn1	snurportin 1	protein-coding	0.095000	0.606965	
mm_9352.1	chr1	172082599	172082799	-	1	NA	NA	NA	50	NM_021607	59287	Mm.218203	NM_021607	ENSMUSG00000003458	Ncstn	9430068N19Rik|AA727311|Aph2|D1Dau13e|Kiaa0253|Nct|mKIAA0253	nicastrin	protein-coding	0.060000	0.616915	
mm_148112.1	chr18	74303885	74304085	-	1	NA	NA	NA	20885	NM_028948	74453	Mm.182293	NM_028948	ENSMUSG00000035394	Cfap53	4933415I03Rik|Ccdc11	cilia and flagella associated protein 53	protein-coding	0.045000	0.517413	
mm_100871.1	chr11	5915010	5915210	-	1	NA	NA	NA	25	NM_001287386	103988	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	0.015000	0.577114	
mm_83187.1	chr9	41004468	41004668	-	1	NA	NA	NA	60	NM_001281954	54698	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	0.010000	0.502488	
mm_21248.1	chr2	156177672	156177872	-	1	NA	NA	NA	1808	NM_001291115	170791	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.025000	0.457711	
mm_143858.1	chr17	84185904	84186104	-	1	NA	NA	NA	1943	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.150000	0.766169	
mm_114976.1	chr13	97243858	97244058	+	1	NA	NA	NA	2853	NM_007930	13803	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.025000	0.467662	
mm_7119.1	chr1	90775581	90775781	-	1	NA	NA	NA	68290	NM_001243009	12835	Mm.7562	NM_009935	ENSMUSG00000048126	Col6a3	AI507288|Col6a-3	collagen, type VI, alpha 3	protein-coding	0.025000	0.597015	
mm_106365.1	chr11	118393902	118394102	-	1	NA	NA	NA	7929	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.030000	0.552239	
mm_106690.1	chr12	3365124	3365324	+	1	NA	NA	NA	92	NM_008445	16570	Mm.7688	NM_008445	ENSMUSG00000020668	Kif3c	mKIAA4058	kinesin family member 3C	protein-coding	0.115000	0.766169	
mm_103954.1	chr11	84069092	84069292	-	1	NA	NA	NA	-835	NM_019819	56405	Mm.240885	NM_019819	ENSMUSG00000018648	Dusp14	1110014C10Rik|2310042C07Rik|D11Ertd395e|MKP-L|Mkp6	dual specificity phosphatase 14	protein-coding	0.045000	0.547264	
mm_97350.1	chr11	77493104	77493304	+	1	NA	NA	NA	-208	NM_001004144	216963	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0.105000	0.711443	-46(CCTTTAAGAACC,+,0.00)
mm_54789.1	chr6	41558303	41558503	-	1	NA	NA	NA	36627	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.000000	0.512438	
mm_68933.1	chr7	126496377	126496577	-	1	NA	NA	NA	5948	NM_001347658	233871	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.020000	0.532338	
mm_115911.1	chr13	23465671	23465871	-	1	NA	NA	NA	130	NM_013483	12231	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0.015000	0.527363	
mm_5678.1	chr1	43159985	43160185	-	1	NA	NA	NA	3876	NM_010212	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.000000	0.338308	
mm_164445.1	chr16	49855687	49855887	+	1	NA	NA	NA	133	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.110000	0.741294	
mm_131429.1	chr16	15604384	15604584	+	1	NA	NA	NA	-9966	NM_023585	70620	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	0.010000	0.567164	
mm_72603.1	chr8	84415731	84415931	+	1	NA	NA	NA	467	NM_001252061	12286	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.090000	0.641791	
mm_135897.1	chr16	65562573	65562773	-	1	NA	NA	NA	24	NM_026879	68942	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0.110000	0.666667	
mm_68155.1	chr7	102250438	102250638	-	1	NA	NA	NA	-420	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.045000	0.676617	
mm_144214.1	chr18	9745138	9745338	+	1	NA	NA	NA	37590	NM_130449	140792	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.000000	0.398010	-21(GCATTTATACAG,+,0.00)
mm_114338.1	chr13	60739839	60740039	+	1	NA	NA	NA	46425	NM_199148	218275	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.010000	0.457711	
mm_16755.1	chr2	9868766	9868966	-	1	NA	NA	NA	9734	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.045000	0.537313	81(CCTTATCAAGCC,+,0.00)
mm_148454.1	chr19	4000521	4000721	+	1	NA	NA	NA	41	NM_025529	66387	Mm.259222	NM_025529	ENSMUSG00000024869	Nudt8	2310039H17Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 8	protein-coding	0.100000	0.706468	
mm_91605.1	chr10	41303111	41303311	-	1	NA	NA	NA	30	NM_133999	103199	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0.065000	0.656716	
mm_108162.1	chr12	76367249	76367449	+	1	NA	NA	NA	2115	NM_001172104	109929	Mm.41880	NM_028356	ENSMUSG00000056459	Zbtb25	2810462M08Rik|2900064P18Rik|AI842128|Kup|Zfp-50|Zfp50	zinc finger and BTB domain containing 25	protein-coding	0.020000	0.457711	
mm_110563.1	chr12	55820979	55821179	-	1	NA	NA	NA	437	NM_019994	56784	Mm.292180	NM_019994	ENSMUSG00000021027	Ralgapa1	2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884	Ral GTPase activating protein, alpha subunit 1	protein-coding	0.120000	0.691542	
mm_27860.1	chr3	79158135	79158335	-	1	NA	NA	NA	-12360	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.388060	
mm_110951.1	chr12	76709875	76710075	-	1	NA	NA	NA	572	NM_013675	20741	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0.120000	0.771144	
mm_21331.1	chr2	157101388	157101588	-	1	NA	NA	NA	14433	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.015000	0.497512	
mm_69604.1	chr7	137125636	137125836	-	1	NA	NA	NA	-108947	NR_045885	100038555	Mm.444788	NR_045885	ENSMUSG00000109722	Gm10578	ENSMUSG00000073800	predicted gene 10578	ncRNA	0.015000	0.542289	
mm_167149.1	chr7	130999982	131000182	+	1	NA	NA	NA	-31994	NM_001347632	12945	Mm.4138	NM_007769	ENSMUSG00000047517	Dmbt1	CRP|CRP-[a]|CRP-[b]|Crpd|DBMT1|gp300|p80	deleted in malignant brain tumors 1	protein-coding	0.010000	0.442786	
mm_123150.1	chr14	57099789	57099989	-	1	NA	NA	NA	4813	NM_008125	14619	Mm.390683	NM_008125	ENSMUSG00000046352	Gjb2	AI325222|Cnx26|Cx26|Gjb-2	gap junction protein, beta 2	protein-coding	0.015000	0.512438	40(CTGTATTAATGG,-,0.00)
mm_145118.1	chr18	44337090	44337290	+	1	NA	NA	NA	3116	NM_001033621	58916	Mm.143804	NM_001033621	ENSMUSG00000024471	Myot	5530402I04Rik|Ttid	myotilin	protein-coding	0.025000	0.527363	
mm_87737.1	chr10	60161566	60161766	+	1	NA	NA	NA	34890	NR_105871	102465546		NR_105871	ENSMUSG00000105468	Mir6906	mmu-mir-6906	microRNA 6906	ncRNA	0.010000	0.507463	-70(CACTATAAGAGG,-,0.00)
mm_75540.1	chr8	57432688	57432888	-	1	NA	NA	NA	-23135	NM_009136	20284	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.015000	0.402985	
mm_80582.1	chr9	84234053	84234253	+	1	NA	NA	NA	285372	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.030000	0.507463	
mm_151914.1	chr19	5799635	5799835	-	1	NA	NA	NA	2937	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.015000	0.442786	
mm_104902.1	chr11	99628137	99628337	-	1	NA	NA	NA	2	NM_001048196	665891	Mm.394141	NM_001048196	ENSMUSG00000063251	Krtap4-1	A030010K20Rik	keratin associated protein 4-1	protein-coding	0.010000	0.462687	-36(AGGTATAAAAGG,-,0.00)
mm_107079.1	chr12	16966074	16966274	+	1	NA	NA	NA	33944	NM_172574	217430	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	0.005000	0.363184	
mm_29543.1	chr3	116712385	116712585	-	1	NA	NA	NA	-205	NM_144902	229782	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	0.050000	0.547264	
mm_78327.1	chr9	25186634	25186834	+	1	NA	NA	NA	-34953	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.005000	0.532338	
mm_146970.1	chr18	33463550	33463750	-	1	NA	NA	NA	-16	NM_053078	27528	Mm.407415	NM_053078	ENSMUSG00000042834	Nrep	AI325076|D0H4S114|Harp|P311|PTZ17|SEZ17	neuronal regeneration related protein	protein-coding	0.025000	0.552239	
mm_109996.1	chr12	15815888	15816088	-	1	NA	NA	NA	797	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.105000	0.631841	
mm_93128.1	chr10	92072001	92072201	-	1	NA	NA	NA	84	NR_029812	723955		NR_029812	ENSMUSG00000065524	Mir135a-2	Mirn135a-2|mir-135a-2	microRNA 135a-2	ncRNA	0.015000	0.417910	
mm_115061.1	chr13	100730945	100731145	+	1	NA	NA	NA	-103	NM_009874	12572	Mm.259718	NM_009874	ENSMUSG00000069089	Cdk7	AI323415|AI528512|C230069N13|Cdkn7|Crk4	cyclin-dependent kinase 7	protein-coding	0.060000	0.552239	
mm_109559.1	chr12	111794659	111794859	+	1	NA	NA	NA	19120	NM_028875	74335	Mm.19082	NM_028875	ENSMUSG00000021287	Xrcc3	-	X-ray repair complementing defective repair in Chinese hamster cells 3	protein-coding	0.035000	0.532338	
mm_5173.1	chr1	10232970	10233170	-	1	NA	NA	NA	-400	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.165000	0.766169	
mm_158313.1	chrX	126915220	126915420	-	1	NA	NA	NA	-81316	NM_177705	237029	Mm.60998	NM_177705	ENSMUSG00000058670	4932411N23Rik	-	RIKEN cDNA 4932411N23 gene	protein-coding	0.000000	0.417910	
mm_86507.1	chr10	7589999	7590199	+	1	NA	NA	NA	299	NM_172784	237253	Mm.206759	NM_172784	ENSMUSG00000019796	Lrp11	1700034J19Rik|6330533B21|9830160H19Rik	low density lipoprotein receptor-related protein 11	protein-coding	0.115000	0.756219	
mm_45300.1	chr5	65335538	65335738	-	1	NA	NA	NA	1	NM_011258	19687	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0.135000	0.711443	
mm_172862.1	chr9	40803320	40803520	+	1	NA	NA	NA	2147	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.015000	0.482587	
mm_16131.1	chr2	170316455	170316655	+	1	NA	NA	NA	-39806	NR_040610	73303	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.025000	0.492537	
mm_48409.1	chr5	140261604	140261804	-	1	NA	NA	NA	59848	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.005000	0.477612	
mm_103315.1	chr11	73138178	73138378	-	1	NA	NA	NA	16	NM_010353	14841	Mm.42045	NM_010353	ENSMUSG00000050107	Gsg2	Haspin	germ cell associated 2, haspin	protein-coding	0.165000	0.741294	
mm_4999.1	chr1	191906715	191906915	+	1	NA	NA	NA	34	NM_009579	22782	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	0.140000	0.696517	
mm_56507.1	chr6	99339338	99339538	-	1	NA	NA	NA	-72923	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.025000	0.502488	
mm_110167.1	chr12	27335040	27335240	-	1	NA	NA	NA	7578	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.010000	0.343284	-68(GCTTTTATGTGA,+,0.00)
mm_128639.1	chr15	59273198	59273398	-	1	NA	NA	NA	-33650	NR_045613	100416830	Mm.490788	NR_045613	ENSMUSG00000098528	Zfp572	4930472F24Rik	zinc finger protein 572	pseudo	0.005000	0.412935	-72(ACTTTTATGGTC,+,0.00)
mm_128482.1	chr15	50889920	50890120	-	1	NA	NA	NA	21	NM_032000	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.080000	0.537313	
mm_13941.1	chr2	121171142	121171342	+	1	NA	NA	NA	74	NM_001290824	51885	Mm.383499	NM_153387	ENSMUSG00000027263	Tubgcp4	4932441P04Rik|76p|D2Ertd435e|GCP-4	tubulin, gamma complex associated protein 4	protein-coding	0.140000	0.746269	
mm_119164.1	chr14	32028929	32029129	+	1	NA	NA	NA	-74	NM_030166	78754	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	0.030000	0.567164	
mm_54044.1	chr6	13677793	13677993	-	1	NA	NA	NA	73	NM_175312	101148	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	0.125000	0.766169	
mm_146130.1	chr18	74625406	74625606	+	1	NA	NA	NA	-94382	NR_045368	73606	Mm.444734	NR_045368		1700120E14Rik	-	RIKEN cDNA 1700120E14 gene	ncRNA	0.030000	0.587065	
mm_148238.1	chr18	80597456	80597656	-	1	NA	NA	NA	-53010	NR_028424	100039348	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.015000	0.447761	
mm_17519.1	chr2	29252266	29252466	-	1	NA	NA	NA	627	NR_029460	76220	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0.110000	0.666667	
mm_103762.1	chr11	81153554	81153754	-	1	NA	NA	NA	-751	NM_007384	11418	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	0.130000	0.746269	
mm_12438.1	chr2	70690279	70690479	+	1	NA	NA	NA	28870	NM_027352	70231	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|ENSMUSG00000075299|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.030000	0.641791	
mm_39430.1	chr5	16553505	16553705	+	1	NA	NA	NA	110	NM_010427	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.015000	0.552239	
mm_40210.1	chr5	37047310	37047510	+	1	NA	NA	NA	-3447	NM_178394	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0.030000	0.582090	
mm_79000.1	chr9	45408189	45408389	+	1	NA	NA	NA	2212	NM_007503	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.055000	0.601990	
mm_135055.1	chr16	33795948	33796148	-	1	NA	NA	NA	2011	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.010000	0.522388	
mm_154126.1	chr19	57239217	57239417	-	1	NA	NA	NA	-23285	NM_178688	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.015000	0.572139	
mm_73103.1	chr8	94601921	94602121	+	1	NA	NA	NA	80	NM_026274	67610	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	0.080000	0.676617	
mm_107828.1	chr12	69184098	69184298	+	1	NA	NA	NA	40	NM_146035	217664	Mm.206642	NM_146035	ENSMUSG00000043998	Mgat2	AA407964|CDGS2|GLCNACTII|GNT-II|GNT2	mannoside acetylglucosaminyltransferase 2	protein-coding	0.155000	0.761194	
mm_153957.1	chr19	47691931	47692131	-	1	NA	NA	NA	11	NM_007732	12821	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	0.025000	0.432836	
mm_6988.1	chr1	86357229	86357429	-	1	NA	NA	NA	-1002	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.010000	0.487562	
mm_90342.1	chr10	127129492	127129692	+	1	NA	NA	NA	-8432	NM_001171026	216440	Mm.295246	NM_177614	ENSMUSG00000040462	Os9	4632413K17Rik|AU022351	amplified in osteosarcoma	protein-coding	0.020000	0.557214	
mm_137281.1	chr17	24728146	24728346	+	1	NA	NA	NA	417	NM_001163945	66211	Mm.46198	NM_025425	ENSMUSG00000002500	Rpl3l	1110057H16Rik	ribosomal protein L3-like	protein-coding	0.035000	0.562189	
mm_81968.1	chr9	120959745	120959945	+	1	NA	NA	NA	4759	NR_106058	102465661		NR_106058	ENSMUSG00000106193	Mir7090	mmu-mir-7090	microRNA 7090	ncRNA	0.025000	0.477612	
mm_55049.1	chr6	49042785	49042985	-	1	NA	NA	NA	6367	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.035000	0.557214	
mm_170544.1	chr19	40119730	40119930	+	1	NA	NA	NA	30151	NM_001167875	107141	Mm.474575	NM_134144	ENSMUSG00000054827	Cyp2c50	AI266900	cytochrome P450, family 2, subfamily c, polypeptide 50	protein-coding	0.040000	0.447761	
mm_128424.1	chr15	46496075	46496275	-	1	NA	NA	NA	4	NR_040451	74726	Mm.78172	NR_040451		4930523O13Rik	4921524H24Rik	RIKEN cDNA 4930523O13 gene	ncRNA	0.020000	0.492537	
mm_64536.1	chr7	144175537	144175737	+	1	NA	NA	NA	117	NM_001113373	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.060000	0.611940	
mm_65963.1	chr7	30435196	30435396	-	1	NA	NA	NA	10286	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.025000	0.611940	
mm_31488.1	chr4	52814512	52814712	+	1	NA	NA	NA	8	NR_040661	75367	Mm.159510	NR_040661	ENSMUSG00000070984	4930552N02Rik	-	RIKEN cDNA 4930552N02 gene	ncRNA	0.000000	0.487562	
mm_160462.1	chr8	109705810	109706010	+	1	NA	NA	NA	-109	NM_029468	75871	Mm.180410	NM_029468	ENSMUSG00000031728	Zfp821	4930566A11Rik|Znf821	zinc finger protein 821	protein-coding	0.165000	0.791045	
mm_161239.1	chr13	96088771	96088971	-	1	NA	NA	NA	43706	NM_029210	75209	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	0.035000	0.532338	
mm_123808.1	chr14	70522132	70522332	-	1	NA	NA	NA	1849	NM_011359	20389	Mm.24040	NM_011359	ENSMUSG00000022097	Sftpc	Bricd6|SP-C|SP5|SPC|Sftp-2|Sftp2|pro-SpC	surfactant associated protein C	protein-coding	0.050000	0.562189	
mm_7761.1	chr1	131138147	131138347	-	1	NA	NA	NA	-13	NM_145508	226419	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.155000	0.751244	
mm_121778.1	chr14	19890399	19890599	-	1	NA	NA	NA	51574	NR_105025	52512	Mm.483998	NR_105025		D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.005000	0.477612	
mm_7019.1	chr1	86582683	86582883	-	1	NA	NA	NA	-282	NM_008801	18582	Mm.12925	NM_008801	ENSMUSG00000026239	Pde6d	AI841218|PrBP/delta	phosphodiesterase 6D, cGMP-specific, rod, delta	protein-coding	0.030000	0.542289	
mm_30786.1	chr4	19575400	19575600	+	1	NA	NA	NA	434	NM_025476	66302	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	0.065000	0.592040	
mm_107897.1	chr12	70672337	70672537	+	1	NA	NA	NA	-153077	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.015000	0.447761	
mm_93213.1	chr10	94944778	94944978	-	1	NA	NA	NA	-300	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.130000	0.721393	
mm_82657.1	chr9	22076315	22076515	-	1	NA	NA	NA	-5039	NM_001310759	319601	Mm.347707	NM_177318	ENSMUSG00000038895	Zfp653	E430039K05Rik|Znf653	zinc finger protein 653	protein-coding	0.055000	0.577114	
mm_87307.1	chr10	42678863	42679063	+	1	NA	NA	NA	47	NM_172416	14628	Mm.46636	NM_172416	ENSMUSG00000038280	Ostm1	1200002H13Rik|HSPC019|gl	osteopetrosis associated transmembrane protein 1	protein-coding	0.120000	0.726368	
mm_114458.1	chr13	67194407	67194607	+	1	NA	NA	NA	1	NM_001048204	218311	Mm.82396	NM_183156	ENSMUSG00000051037	Zfp455	3732412P20Rik|Rslcan-10	zinc finger protein 455	protein-coding	0.030000	0.472637	
mm_81280.1	chr9	108296762	108296962	+	1	NA	NA	NA	-60	NM_001013814	434437	Mm.390225	NM_001013814	ENSMUSG00000032607	Amt	EG434437	aminomethyltransferase	protein-coding	0.035000	0.587065	
mm_22332.1	chr2	180701981	180702181	-	1	NA	NA	NA	21	NM_011805	23856	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.105000	0.651741	
mm_77361.1	chr8	119693687	119693887	-	1	NA	NA	NA	-6222	NM_026922	69047	Mm.46251	NM_026922	ENSMUSG00000034112	Atp2c2	1810010G06Rik|Spca2|mKIAA0703	ATPase, Ca++ transporting, type 2C, member 2	protein-coding	0.015000	0.487562	
mm_48252.1	chr5	137787552	137787752	-	1	NA	NA	NA	-150	NM_001005426	381678	Mm.332765	NM_001005426	ENSMUSG00000037108	Zcwpw1	Gm1053	zinc finger, CW type with PWWP domain 1	protein-coding	0.055000	0.497512	
mm_173164.1	chrX	4136228	4136428	+	1	NA	NA	NA	-60248	NM_001085543	627264	Mm.457960	NM_001085543	ENSMUSG00000094307	Btbd35f28	Gm14347|OTTMUSG00000016407	BTB domain containing 35, family member 28	protein-coding	0.035000	0.482587	
mm_44970.1	chr5	36796633	36796833	-	1	NA	NA	NA	21	NM_026242	67568	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0.140000	0.661692	
mm_166302.1	chr5	104571291	104571491	+	1	NA	NA	NA	-281	NM_001346672	69623	Mm.69919	NM_027142		Zfp33b	2310012P17Rik	zinc finger protein 33B	protein-coding	0.010000	0.572139	
mm_40895.1	chr5	75153495	75153695	+	1	NA	NA	NA	659	NM_001347719	18595	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.035000	0.611940	
mm_169024.1	chr13	113718471	113718671	+	1	NA	NA	NA	-54895	NM_019960	56534	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	0.035000	0.497512	
mm_43282.1	chr5	133073210	133073410	+	1	NA	NA	NA	-530967	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.010000	0.348259	
mm_148166.1	chr18	77778453	77778653	-	1	NA	NA	NA	4785	NM_007505	11946	Mm.276137	NM_007505	ENSMUSG00000025428	Atp5a1	AI035633|AL022851|AL023067|Atpm|D18Ertd206e|Mom2	ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	protein-coding	0.050000	0.517413	
mm_136881.1	chr17	13008106	13008306	+	1	NA	NA	NA	367	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.095000	0.696517	
mm_3334.1	chr1	137948588	137948788	+	1	NA	NA	NA	-17767	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.000000	0.268657	
mm_144912.1	chr18	37473423	37473623	+	1	NA	NA	NA	-23	NM_053140	93886	Mm.283857	NM_053140	ENSMUSG00000047033	Pcdhb15	Pcdhb7|PcdhbO	protocadherin beta 15	protein-coding	0.020000	0.477612	
mm_16324.1	chr2	174304657	174304857	+	1	NA	NA	NA	6898	NM_001310085	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.000000	0.363184	
mm_46805.1	chr5	113077027	113077227	-	1	NA	NA	NA	4457	NM_001159650	12962	Mm.378899	NM_021352	ENSMUSG00000029352	Crybb3	AI852419	crystallin, beta B3	protein-coding	0.005000	0.417910	
mm_142540.1	chr17	46555372	46555572	-	1	NA	NA	NA	690	NM_020493	20807	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0.140000	0.736318	
mm_10770.1	chr2	24215371	24215571	+	1	NA	NA	NA	54	NM_019450	54448	Mm.133095	NM_019450	ENSMUSG00000026984	Il1f6	Fil1|IL-1H1|IL1RP2|Il1f9|Il36a	interleukin 1 family, member 6	protein-coding	0.010000	0.492537	
mm_109635.1	chr12	112768393	112768593	+	1	NA	NA	NA	7838	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.020000	0.592040	
mm_16723.1	chr2	7395796	7395996	-	1	NA	NA	NA	104	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.020000	0.388060	88(TCCTTTAAAAAA,-,0.00)
mm_101681.1	chr11	40684865	40685065	-	1	NA	NA	NA	7717	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.005000	0.378109	
mm_144436.1	chr18	21093209	21093409	+	1	NA	NA	NA	20965	NM_008586	17288	Mm.2682	NM_008586	ENSMUSG00000024313	Mep1b	Mep-1b	meprin 1 beta	protein-coding	0.015000	0.462687	
mm_158225.1	chrX	106142966	106143166	-	1	NA	NA	NA	-209	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.020000	0.512438	
mm_89587.1	chr10	95782567	95782767	+	1	NA	NA	NA	-157996	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.005000	0.497512	
mm_11866.1	chr2	48949451	48949651	+	1	NA	NA	NA	43	NM_029924	109241	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630|OTTMUSG00000012483	methyl-CpG binding domain protein 5	protein-coding	0.035000	0.631841	
mm_69671.1	chr7	139983860	139984060	-	1	NA	NA	NA	2914	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.010000	0.557214	
mm_134533.1	chr16	19260782	19260982	-	1	NA	NA	NA	25859	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.000000	0.407960	
mm_61976.1	chr7	90614985	90615185	+	1	NA	NA	NA	-139090	NM_026734	68472	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	0.010000	0.437811	
mm_118260.1	chr13	112447228	112447428	-	1	NA	NA	NA	-16742	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.015000	0.467662	
mm_136426.1	chr16	94245975	94246175	-	1	NA	NA	NA	41781	NM_139145	110948	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.035000	0.557214	
mm_88085.1	chr10	68210124	68210324	+	1	NA	NA	NA	68502	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.030000	0.522388	86(CCCTCTAAAAGG,-,0.00),87(CCTCTAAAAGGG,+,0.00)
mm_132738.1	chr16	43889813	43890013	+	1	NA	NA	NA	11	NM_027801	212153	Mm.209835	NM_027801	ENSMUSG00000022701	Ccdc191	2610015P09Rik|8430422M09Rik|AU040712	coiled-coil domain containing 191	protein-coding	0.045000	0.577114	
mm_5615.1	chr1	39720868	39721068	-	1	NA	NA	NA	21	NM_001145660	619289	Mm.334107	NM_001145660	ENSMUSG00000057173	Rfx8	4933400N17Rik	regulatory factor X 8	protein-coding	0.095000	0.721393	
mm_19260.1	chr2	84799184	84799384	-	1	NA	NA	NA	456	NM_019949	56791	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.005000	0.412935	
mm_166561.1	chr6	46213854	46214054	+	1	NA	NA	NA	-1030442	NM_025771	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.000000	0.283582	
mm_96265.1	chr11	62648720	62648920	+	1	NA	NA	NA	156	NM_175002	216829	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	0.085000	0.696517	
mm_107335.1	chr12	32378689	32378889	+	1	NA	NA	NA	0	NM_001162903	72123	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.115000	0.706468	
mm_77569.1	chr8	123432184	123432384	-	1	NA	NA	NA	-10672	NM_001253784	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.035000	0.412935	
mm_159143.1	chr2	86356202	86356402	-	1	NA	NA	NA	135	NM_147018	259020	Mm.377792	NM_147018	ENSMUSG00000075188	Olfr1056	MOR186-2	olfactory receptor 1056	protein-coding	0.005000	0.427861	
mm_138542.1	chr17	35262969	35263169	+	1	NA	NA	NA	-25	NM_010380	14964	Mm.439675	NM_010380	ENSMUSG00000073411	H2-D1	H-2D|H2-D	histocompatibility 2, D region locus 1	protein-coding	0.095000	0.666667	
mm_2704.1	chr1	127978339	127978539	+	1	NA	NA	NA	109666	NM_178690	226407	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0.000000	0.487562	
mm_107248.1	chr12	27336118	27336318	+	1	NA	NA	NA	6500	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.020000	0.353234	
mm_82788.1	chr9	28996295	28996495	-	1	NA	NA	NA	966734	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.025000	0.402985	
mm_50716.1	chr6	52201121	52201321	+	1	NA	NA	NA	97	NR_015611	72628	Mm.348030	NR_015611	ENSMUSG00000085696	Hoxaas3	2700086A05Rik	Hoxa cluster antisense RNA 3	ncRNA	0.015000	0.412935	-60(GGGCTTATAAAG,-,0.00),-58(GCTTATAAAGTT,+,0.00),-34(ACTTTTAAAAGG,-,0.00),-33(CTTTTAAAAGGA,+,0.00)
mm_11178.1	chr2	28702583	28702783	+	1	NA	NA	NA	2522	NM_001033874	68870	Mm.273318	NM_001033874	ENSMUSG00000026807	Ak8	1190002A17Rik|AK 8	adenylate kinase 8	protein-coding	0.010000	0.547264	
mm_141756.1	chr17	34263001	34263201	-	1	NA	NA	NA	-126	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.015000	0.472637	
mm_74079.1	chr8	122476073	122476273	+	1	NA	NA	NA	30	NM_153775	66965	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0.160000	0.766169	
mm_136744.1	chr17	8356125	8356325	+	1	NA	NA	NA	15486	NM_178774	320111	Mm.442510	NM_178774	ENSMUSG00000055945	Prr18	9630019K15Rik	proline rich 18	protein-coding	0.010000	0.567164	
mm_31592.1	chr4	57854646	57854846	+	1	NA	NA	NA	184	NM_001035533	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.030000	0.512438	
mm_55697.1	chr6	72899195	72899395	-	1	NA	NA	NA	-3	NM_001347231	74287	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0.150000	0.815920	
mm_120006.1	chr14	55650114	55650314	+	1	NA	NA	NA	30	NM_001253889	71099	Mm.171300	NM_027673	ENSMUSG00000007591	Tssk4	1700020B19Rik|4933424F08Rik|TSK-4|TSSK-4	testis-specific serine kinase 4	protein-coding	0.010000	0.482587	
mm_38792.1	chr4	148130562	148130762	-	1	NA	NA	NA	36	NM_027426	70433	Mm.275288	NM_027426	ENSMUSG00000029005	Draxin	2610109H07Rik|neucrin	dorsal inhibitory axon guidance protein	protein-coding	0.120000	0.761194	
mm_94660.1	chr11	17159346	17159546	+	1	NA	NA	NA	148	NM_024459	19058	Mm.41840	NM_024459	ENSMUSG00000033953	Ppp3r1	CaNB1|Cnb1|MCIP1	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I)	protein-coding	0.145000	0.746269	
mm_61446.1	chr7	75575518	75575718	+	1	NA	NA	NA	120084	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.010000	0.447761	
mm_120697.1	chr14	70890352	70890552	+	1	NA	NA	NA	345	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.060000	0.606965	
mm_115103.1	chr13	103332446	103332646	+	1	NA	NA	NA	1946	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.005000	0.442786	
mm_53273.1	chr6	128487330	128487530	+	1	NA	NA	NA	39290	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.020000	0.462687	
mm_164350.1	chr16	19968079	19968279	-	1	NA	NA	NA	14870	NM_183390	239743	Mm.86699	NM_183390	ENSMUSG00000043008	Klhl6	-	kelch-like 6	protein-coding	0.000000	0.323383	
mm_68237.1	chr7	105395691	105395891	-	1	NA	NA	NA	4263	NM_001242364	74349	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	0.000000	0.472637	46(GACCCTATAAAG,-,0.00),48(CCCTATAAAGCT,+,0.00)
mm_132717.1	chr16	43508563	43508763	+	1	NA	NA	NA	-88467	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.010000	0.417910	-6(TTTTTTAAAGCC,+,0.00)
mm_75342.1	chr8	43306900	43307100	-	1	NA	NA	NA	9	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.045000	0.567164	
mm_156586.1	chrX	152144146	152144346	+	1	NA	NA	NA	-22	NM_001114664	245666	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	0.165000	0.835821	
mm_150996.1	chr19	46623319	46623519	+	1	NA	NA	NA	18	NM_001177813	226178	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.050000	0.641791	
mm_76810.1	chr8	104441509	104441709	-	1	NA	NA	NA	1438	NM_001013380	234663	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	0.010000	0.383085	
mm_12002.1	chr2	57238373	57238573	+	1	NA	NA	NA	91	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.120000	0.711443	
mm_102076.1	chr11	52271362	52271562	-	1	NA	NA	NA	11133	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.005000	0.417910	
mm_89844.1	chr10	106879786	106879986	+	1	NA	NA	NA	243778	NM_001142804	380660	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding	0.015000	0.432836	
mm_164806.1	chr18	29733589	29733789	+	1	NA	NA	NA	-237273	NR_045391	78058	Mm.416952	NR_045391		4930578E11Rik	-	RIKEN cDNA 4930578E11 gene	ncRNA	0.010000	0.393035	
mm_161924.1	chr18	75521665	75521865	-	1	NA	NA	NA	7120	NR_045879	100038353	Mm.440724	NR_045879	ENSMUSG00000097712	Gm10532	ENSMUSG00000073534	predicted gene 10532	ncRNA	0.020000	0.601990	
mm_98862.1	chr11	97726715	97726915	+	1	NA	NA	NA	17889	NM_054051	108083	Mm.39700	NM_054051	ENSMUSG00000018547	Pip4k2b	AI848124|PI5P4Kbeta|Pip5k2b|c11	phosphatidylinositol-5-phosphate 4-kinase, type II, beta	protein-coding	0.030000	0.482587	
mm_47430.1	chr5	123174346	123174546	-	1	NA	NA	NA	8240	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.030000	0.557214	
mm_105173.1	chr11	101784523	101784723	-	1	NA	NA	NA	687	NM_008815	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.105000	0.706468	
mm_142465.1	chr17	45601740	45601940	-	1	NA	NA	NA	75	NM_001177470	653016	Mm.45676	NM_001177468	ENSMUSG00000079471	Gm7325	EG653016|Esgp	predicted gene 7325	protein-coding	0.005000	0.527363	
mm_28370.1	chr3	89904413	89904613	-	1	NA	NA	NA	8683	NM_001310676	16194	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.000000	0.457711	
mm_133793.1	chr16	95258285	95258485	+	1	NA	NA	NA	827	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.015000	0.492537	82(TTCTTTAAAAAC,-,0.00)
mm_40132.1	chr5	35042328	35042528	+	1	NA	NA	NA	919	NM_019447	54426	Mm.27369	NM_019447	ENSMUSG00000029102	Hgfac	HGFA	hepatocyte growth factor activator	protein-coding	0.010000	0.606965	
mm_122535.1	chr14	47385696	47385896	-	1	NA	NA	NA	11936	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.020000	0.452736	
mm_34896.1	chr4	155625107	155625307	+	1	NA	NA	NA	338	NM_007661	12537	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	0.045000	0.552239	
mm_154464.1	chrM	3286	3486	-	1	NA	NA	NA	NA	NA									0.040000	0.432836	
mm_60593.1	chr7	44496494	44496694	+	1	NA	NA	NA	6	NM_028169	75538	Mm.258841	NM_028169	ENSMUSG00000051113	Fam71e1	0610007G24Rik|1700021N13Rik|1700021P22Rik|GARI-L5	family with sequence similarity 71, member E1	protein-coding	0.075000	0.616915	
mm_159949.1	chr6	85765653	85765853	-	1	NA	NA	NA	-9	NM_001037842	93674	Mm.440772	NM_053097	ENSMUSG00000051262	Nat8f3	4833414A14Rik|4930583K21Rik|Cml3	N-acetyltransferase 8 (GCN5-related) family member 3	protein-coding	0.035000	0.537313	
mm_150821.1	chr19	44493384	44493584	+	1	NA	NA	NA	12	NM_011720	22423	Mm.88365	NM_011720	ENSMUSG00000036961	Wnt8b	-	wingless-type MMTV integration site family, member 8B	protein-coding	0.015000	0.462687	
mm_145122.1	chr18	44380689	44380889	+	1	NA	NA	NA	289	NM_027490	70640	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0.070000	0.656716	
mm_164560.1	chr17	17827007	17827207	+	1	NA	NA	NA	-3081	NR_029536	387230		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	0.100000	0.815920	
mm_71421.1	chr8	46490866	46491066	+	1	NA	NA	NA	0	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.020000	0.567164	
mm_57714.1	chr6	128707707	128707907	-	1	NA	NA	NA	15239	NM_001099918	100043861	Mm.66911	NM_001099918	ENSMUSG00000079299	Klrb1	4930431A04Rik|Gm4696|Klrb1g|Klrb6|Ly-55|Ly55|NKR-P1G|Nkrp-1e|Nkrp1g	killer cell lectin-like receptor subfamily B member 1	protein-coding	0.010000	0.452736	-97(CCATATAAAAAG,-,0.00)
mm_133912.1	chr16	97554944	97555144	+	1	NA	NA	NA	18961	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.005000	0.422886	
mm_5707.1	chr1	43521948	43522148	-	1	NA	NA	NA	76297	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.005000	0.502488	
mm_23855.1	chr3	83010040	83010240	+	1	NA	NA	NA	2416	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.015000	0.447761	
mm_162243.1	chrX	155623213	155623413	-	1	NA	NA	NA	14	NM_001093750	211612	Mm.218811	NM_001093750	ENSMUSG00000041552	Ptchd1	9630036J22Rik|AI848149|Gm387	patched domain containing 1	protein-coding	0.125000	0.716418	
mm_115447.1	chr13	118556053	118556253	+	1	NA	NA	NA	-15	NR_045982	75890	Mm.141235	NR_045982	ENSMUSG00000100727	1700003P14Rik	1700030O10Rik|4930584L06Rik	RIKEN cDNA 1700003P14 gene	ncRNA	0.005000	0.333333	
mm_61195.1	chr7	63917145	63917345	+	1	NA	NA	NA	388	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.020000	0.512438	
mm_108287.1	chr12	79138242	79138442	+	1	NA	NA	NA	7554	NM_009705	11847	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.005000	0.427861	
mm_134065.1	chr16	8623830	8624030	-	1	NA	NA	NA	13771	NM_025708	66690	Mm.10068	NM_025708	ENSMUSG00000043140	Tmem186	2810440M13Rik|4432406C05Rik|AI648175|AW210586	transmembrane protein 186	protein-coding	0.020000	0.522388	-18(CTTCTTAAAGTC,+,0.00)
mm_153013.1	chr19	30574075	30574275	-	1	NA	NA	NA	-24679	NM_010051	13380	Mm.214717	NM_010051	ENSMUSG00000024868	Dkk1	mdkk-1	dickkopf WNT signaling pathway inhibitor 1	protein-coding	0.005000	0.492537	
mm_62916.1	chr7	118113992	118114192	+	1	NA	NA	NA	2055	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0.010000	0.437811	
mm_169542.1	chr15	101151532	101151732	+	1	NA	NA	NA	-22493	NM_007395	11479	Mm.308467	NM_007395	ENSMUSG00000000532	Acvr1b	6820432J04|ActR-IB|ActRIB|Acvrlk4|Alk4|SKR2	activin A receptor, type 1B	protein-coding	0.015000	0.482587	
mm_65629.1	chr7	27542692	27542892	-	1	NA	NA	NA	10426	NM_011116	18807	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.090000	0.666667	
mm_59572.1	chr7	28115486	28115686	+	1	NA	NA	NA	-13880	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.522388	
mm_109538.1	chr12	111547964	111548164	+	1	NA	NA	NA	7118	NR_033168	100316932	Mm.484709	NR_033168	ENSMUSG00000064493	Snora28	MBI-13	small nucleolar RNA, H/ACA box 28	snoRNA	0.015000	0.398010	
mm_72012.1	chr8	70703420	70703620	+	1	NA	NA	NA	5781	NM_001286944	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.010000	0.562189	
mm_60344.1	chr7	44356537	44356737	+	1	NA	NA	NA	18393	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.020000	0.606965	
mm_133285.1	chr16	77448392	77448592	+	1	NA	NA	NA	119164	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.015000	0.373134	
mm_172441.1	chr7	29965517	29965717	-	1	NA	NA	NA	-13724	NM_178384	72723	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77	zinc finger protein 74	protein-coding	0.055000	0.547264	
mm_97700.1	chr11	80177279	80177479	+	1	NA	NA	NA	-6493	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.000000	0.442786	-66(GGGCAGAAAAGG,-,0.00)
mm_105276.1	chr11	102407776	102407976	-	1	NA	NA	NA	-359	NM_026542	68066	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.070000	0.557214	
mm_93311.1	chr10	98880028	98880228	-	1	NA	NA	NA	-35024	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.020000	0.407960	
mm_31728.1	chr4	62965560	62965760	+	1	NA	NA	NA	86	NM_028326	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.175000	0.835821	
mm_166176.1	chr5	30461750	30461950	-	1	NA	NA	NA	82	NM_001286421	83762	Mm.244502	NM_031875	ENSMUSG00000062372	Otof	-	otoferlin	protein-coding	0.025000	0.611940	
mm_124061.1	chr14	78220414	78220614	-	1	NA	NA	NA	-29036	NR_035499	100316715		NR_035499	ENSMUSG00000087932	Mir1971	mmu-mir-1971	microRNA 1971	ncRNA	0.005000	0.492537	
mm_5100.1	chr1	5019270	5019470	-	1	NA	NA	NA	169	NM_021374	58175	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0.075000	0.641791	
mm_140717.1	chr17	15374771	15374971	-	1	NA	NA	NA	952	NM_007865	13388	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta-like 1 (Drosophila)	protein-coding	0.075000	0.646766	
mm_118854.1	chr14	25751263	25751463	+	1	NA	NA	NA	17493	NM_001101433	71918	Mm.41904	NM_001101433	ENSMUSG00000055538	Zcchc24	2310047A01Rik	zinc finger, CCHC domain containing 24	protein-coding	0.015000	0.462687	
mm_50817.1	chr6	54429559	54429759	+	1	NA	NA	NA	562	NR_033635	100042056	Mm.448157	NM_198118	ENSMUSG00000073067	9130019P16Rik	6430501H15Rik|OTTMUSG00000023151	RIKEN cDNA 9130019P16 gene	ncRNA	0.125000	0.756219	
mm_58439.1	chr7	3298006	3298206	+	1	NA	NA	NA	5078	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.000000	0.522388	-19(GTCTCTTTAGGG,-,0.00),-17(CTCTTTAGGGGC,+,0.00)
mm_62550.1	chr7	102441701	102441901	+	1	NA	NA	NA	106	NM_009103	20133	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.100000	0.572139	
mm_129040.1	chr15	75055188	75055388	-	1	NA	NA	NA	-6451	NM_001252056	17067	Mm.1583	NM_010741	ENSMUSG00000079018	Ly6c1	AA682074|AA959465|Ly-6C|Ly-6C1|Ly6c	lymphocyte antigen 6 complex, locus C1	protein-coding	0.010000	0.592040	
mm_83710.1	chr9	50739272	50739472	-	1	NA	NA	NA	-1637	NM_001311069	330938	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	0.080000	0.651741	
mm_23397.1	chr3	57806924	57807124	+	1	NA	NA	NA	40733	NM_019410	18645	Mm.271744	NM_019410	ENSMUSG00000027805	Pfn2	Pfn	profilin 2	protein-coding	0.000000	0.333333	
mm_158309.1	chrX	124109753	124109953	-	1	NA	NA	NA	26057	NM_001100616	100038941	Mm.388852	NM_001100616	ENSMUSG00000072049	Vmn2r121	EG625699	vomeronasal 2, receptor 121	protein-coding	0.005000	0.318408	
mm_87351.1	chr10	43593298	43593498	+	1	NA	NA	NA	-29	NR_033558	414125	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	0.015000	0.497512	
mm_55450.1	chr6	67283938	67284138	-	1	NA	NA	NA	17059	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.005000	0.378109	
mm_57902.1	chr6	131388290	131388490	-	1	NA	NA	NA	60	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.210000	0.815920	
mm_115467.1	chr13	119429623	119429823	+	1	NA	NA	NA	821	NM_145457	218693	Mm.490243	NM_145457	ENSMUSG00000025451	Paip1	PAIP-1	polyadenylate binding protein-interacting protein 1	protein-coding	0.050000	0.616915	
mm_144201.1	chr18	9450188	9450388	+	1	NA	NA	NA	-138	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.085000	0.631841	
mm_30537.1	chr4	3574864	3575064	+	1	NA	NA	NA	85	NM_054089	116940	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	0.115000	0.646766	
mm_168657.1	chr11	8884871	8885071	+	1	NA	NA	NA	126220	NM_001303610	15574	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	0.000000	0.517413	
mm_8651.1	chr1	156444501	156444701	-	1	NA	NA	NA	-23686	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.005000	0.378109	38(TCTTTTAGAGTG,+,0.00)
mm_150150.1	chr19	31949859	31950059	+	1	NA	NA	NA	81198	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.005000	0.388060	
mm_128399.1	chr15	43869926	43870126	-	1	NA	NA	NA	3	NM_175502	239408	Mm.41219	NM_175502	ENSMUSG00000054409	Tmem74	AA549547|B230382K22Rik	transmembrane protein 74	protein-coding	0.070000	0.621891	
mm_170228.1	chr17	81838472	81838672	-	1	NA	NA	NA	-100185	NM_011406	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.015000	0.412935	
mm_37697.1	chr4	129309779	129309979	-	1	NA	NA	NA	22258	NM_023485	68828	Mm.132243	NM_023485	ENSMUSG00000001333	Sync	1110057H03Rik|SNIP4	syncoilin	protein-coding	0.010000	0.412935	
mm_51029.1	chr6	65433052	65433252	+	1	NA	NA	NA	51858	NM_175524	243407	Mm.389758	NM_175524	ENSMUSG00000029917	C130060K24Rik	-	RIKEN cDNA C130060K24 gene	protein-coding	0.020000	0.427861	
mm_162367.1	chr1	65121981	65122181	+	1	NA	NA	NA	1133	NM_175293	98303	Mm.348057	NM_175293	ENSMUSG00000044816	D630023F18Rik	AI314969	RIKEN cDNA D630023F18 gene	protein-coding	0.000000	0.318408	
mm_152718.1	chr19	17559926	17560126	-	1	NA	NA	NA	165983	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.010000	0.378109	
mm_157433.1	chrX	38587136	38587336	-	1	NA	NA	NA	-11040	NM_001110142	72584	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	0.005000	0.457711	
mm_155651.1	chrX	85870136	85870336	+	1	NA	NA	NA	-37	NM_001163539	71398	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	0.000000	0.427861	
mm_136799.1	chr17	12151614	12151814	+	1	NA	NA	NA	32430	NM_026644	68262	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.030000	0.467662	
mm_42287.1	chr5	114378850	114379050	+	1	NA	NA	NA	1555	NM_001159941	330171	Mm.238285	NM_026145	ENSMUSG00000001098	Kctd10	AW536343|C87062|mBACURD3	potassium channel tetramerisation domain containing 10	protein-coding	0.005000	0.621891	
mm_104299.1	chr11	90390818	90391018	-	1	NA	NA	NA	-1	NM_172563	217082	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0.125000	0.771144	
mm_25830.1	chr3	129194551	129194751	+	1	NA	NA	NA	-5227	NM_001286942	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.010000	0.477612	
mm_7853.1	chr1	132391630	132391830	-	1	NA	NA	NA	-344	NM_178874	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.170000	0.835821	
mm_25143.1	chr3	102725029	102725229	+	1	NA	NA	NA	-9641	NM_027533	70747	Mm.27469	NM_027533	ENSMUSG00000027858	Tspan2	6330415F13Rik|B230119D02Rik|tspan-2	tetraspanin 2	protein-coding	0.015000	0.472637	
mm_54540.1	chr6	36742948	36743148	-	1	NA	NA	NA	68313	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.000000	0.303483	82(GCTTATATAGGC,+,0.00)
mm_48062.1	chr5	136567165	136567365	-	1	NA	NA	NA	225	NM_001291234	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.065000	0.611940	
mm_49262.1	chr6	17463899	17464099	+	1	NA	NA	NA	42	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.145000	0.781095	
mm_37108.1	chr4	116639057	116639257	-	1	NA	NA	NA	-11206	NM_016777	50927	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.020000	0.557214	
mm_152390.1	chr19	10482589	10482789	-	1	NA	NA	NA	208	NM_133689	67752	Mm.25939	NM_133689	ENSMUSG00000035179	Ppp1r32	4930579J09Rik|AU015816|IIIG9|IIIG9L|IIIG9S	protein phosphatase 1, regulatory subunit 32	protein-coding	0.015000	0.522388	
mm_157056.1	chrX	8131613	8131813	-	1	NA	NA	NA	1145	NM_001290783	73447	Mm.284162	NM_026137	ENSMUSG00000031166	Wdr13	1700060B08Rik|5730411P10Rik|DXHXS7467e|W51679|mMg21	WD repeat domain 13	protein-coding	0.010000	0.502488	
mm_162232.1	chrX	151835121	151835321	+	1	NA	NA	NA	-24341	NR_130340	100526542		NR_130340	ENSMUSG00000093219	Mir3113	mmu-mir-3113	microRNA 3113	ncRNA	0.000000	0.303483	
mm_130989.1	chr15	103376724	103376924	-	1	NA	NA	NA	-10033	NM_001314041	16402	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0.005000	0.522388	
mm_113992.1	chr13	52583003	52583203	+	1	NA	NA	NA	-334	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.085000	0.691542	
mm_115929.1	chr13	23571088	23571288	-	1	NA	NA	NA	32	NM_178187	319166	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	0.030000	0.398010	
mm_76723.1	chr8	94876157	94876357	-	1	NA	NA	NA	55	NM_053246	114255	Mm.203949	NM_053246	ENSMUSG00000040631	Dok4	-	docking protein 4	protein-coding	0.135000	0.731343	
mm_116206.1	chr13	32776311	32776511	-	1	NA	NA	NA	5368	NM_001166030	238564	Mm.60041	NM_001166030	ENSMUSG00000044951	Mylk4	EG238564	myosin light chain kinase family, member 4	protein-coding	0.025000	0.527363	-95(TCCTTTTAAAGA,-,0.00),-94(CCTTTTAAAGAA,+,0.00)
mm_150098.1	chr19	29470665	29470865	+	1	NA	NA	NA	51222	NR_015567	77779	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.010000	0.527363	
mm_148766.1	chr19	6079923	6080123	+	1	NA	NA	NA	-15	NM_001111317	433215	Mm.437186	NM_001111317	ENSMUSG00000047733	Tmem262	-	transmembrane protein 262	protein-coding	0.010000	0.502488	
mm_168101.1	chr10	13013237	13013437	+	1	NA	NA	NA	4887	NM_175102	66125	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0.000000	0.517413	
mm_122704.1	chr14	52180126	52180326	-	1	NA	NA	NA	17013	NM_033618	114741	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	0.015000	0.393035	
mm_151840.1	chr19	5726164	5726364	-	1	NA	NA	NA	53	NM_001114595	114601	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0.125000	0.736318	
mm_32156.1	chr4	99955626	99955826	+	1	NA	NA	NA	26275	NM_028132	72157	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.040000	0.517413	
mm_51643.1	chr6	86017181	86017381	+	1	NA	NA	NA	90	NM_012013	26910	Mm.8024	NM_012013	ENSMUSG00000030001	Figla	FIGalpha|bHLHc8	folliculogenesis specific basic helix-loop-helix	protein-coding	0.040000	0.671642	
mm_63576.1	chr7	128117759	128117959	+	1	NA	NA	NA	-11709	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.005000	0.378109	
mm_57542.1	chr6	126644739	126644939	-	1	NA	NA	NA	962	NM_010595	16485	Mm.40424	NM_010595	ENSMUSG00000047976	Kcna1	AI840627|Kca1-1|Kv1.1|MBK1|Mk-1|Shak|mceph	potassium voltage-gated channel, shaker-related subfamily, member 1	protein-coding	0.070000	0.646766	
mm_23324.1	chr3	53475255	53475455	+	1	NA	NA	NA	11538	NM_173382	212127	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	0.025000	0.482587	
mm_104537.1	chr11	96350000	96350200	-	1	NA	NA	NA	-1532	NM_134032	103889	Mm.281153	NM_134032	ENSMUSG00000075588	Hoxb2	AI894218|Hox-2.8|Hoxbes2	homeobox B2	protein-coding	0.045000	0.582090	
mm_134687.1	chr16	22439517	22439717	-	1	NA	NA	NA	-47	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.145000	0.781095	
mm_31465.1	chr4	49536431	49536631	+	1	NA	NA	NA	13015	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.010000	0.412935	
mm_9624.1	chr1	176756621	176756821	-	1	NA	NA	NA	15702	NR_029775	723921		NR_029775	ENSMUSG00000065573	Mir350	Mirn350|mir-350|mmu-mir-350	microRNA 350	ncRNA	0.025000	0.487562	
mm_204.1	chr1	16111260	16111460	+	1	NA	NA	NA	5478	NM_133832	98711	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.000000	0.427861	
mm_44822.1	chr5	33657762	33657962	-	1	NA	NA	NA	-30	NM_026698	68366	Mm.491151	NM_026698	ENSMUSG00000019295	Tmem129	0610039G24Rik|2410015J15Rik|AA409575	transmembrane protein 129	protein-coding	0.080000	0.641791	
mm_137796.1	chr17	29680433	29680633	+	1	NA	NA	NA	19938	NM_028791	74157	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	0.000000	0.457711	
mm_47452.1	chr5	123572904	123573104	-	1	NA	NA	NA	11	NM_029929	77573	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0.135000	0.656716	
mm_156044.1	chrX	108484327	108484527	+	1	NA	NA	NA	349928	NM_001081477	382236	Mm.100112	NM_001081477	ENSMUSG00000063663	Brwd3	Brodl|D030064D06Rik|Gm596	bromodomain and WD repeat domain containing 3	protein-coding	0.005000	0.442786	
mm_62109.1	chr7	96522250	96522450	+	1	NA	NA	NA	-180386	NR_046043	670727	Mm.421352	NR_046043	ENSMUSG00000085751	Gm15412	OTTMUSG00000021245	predicted gene 15412	ncRNA	0.010000	0.552239	
mm_51766.1	chr6	87981611	87981811	+	1	NA	NA	NA	28	NR_026990	434064	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	0.110000	0.696517	
mm_16390.1	chr2	178659257	178659457	+	1	NA	NA	NA	228842	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.010000	0.467662	
mm_5207.1	chr1	13565848	13566048	-	1	NA	NA	NA	23962	NM_028173	72265	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	0.000000	0.328358	
mm_49048.1	chr6	4903161	4903361	+	1	NA	NA	NA	-59	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.175000	0.845771	
mm_129772.1	chr15	82790952	82791152	-	1	NA	NA	NA	3193	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.050000	0.527363	
mm_94585.1	chr11	11692742	11692942	+	1	NA	NA	NA	2665	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.015000	0.432836	
mm_152620.1	chr19	12463698	12463898	-	1	NA	NA	NA	3019	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.005000	0.477612	
mm_78525.1	chr9	34546220	34546420	+	1	NA	NA	NA	57589	NM_001190911	67703	Mm.220710	NM_026324	ENSMUSG00000032036	Kirrel3	1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867	kin of IRRE like 3 (Drosophila)	protein-coding	0.005000	0.467662	
mm_71071.1	chr8	34154512	34154712	+	1	NA	NA	NA	49	NM_026432	67887	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	0.125000	0.671642	26(CCTTTTATGGTG,+,0.00)
mm_143331.1	chr17	66449637	66449837	-	1	NA	NA	NA	13	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.140000	0.771144	
mm_165182.1	chr2	29772453	29772653	+	1	NA	NA	NA	11025	NM_001177392	433416	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	OTTMUSG00000012686	predicted gene 13547	protein-coding	0.010000	0.432836	
mm_85368.1	chr9	103220911	103221111	-	1	NA	NA	NA	9275	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.030000	0.557214	
mm_126065.1	chr15	77045021	77045221	+	1	NA	NA	NA	46	NM_001163621	71939	Mm.34173	NM_028010	ENSMUSG00000033576	Apol6	2310076O14Rik	apolipoprotein L 6	protein-coding	0.020000	0.527363	
mm_91343.1	chr10	26373979	26374179	-	1	NA	NA	NA	-45	NM_001347467	237339	Mm.338439	NM_172787	ENSMUSG00000039089	L3mbtl3	AI481284|MBT-1	l(3)mbt-like 3 (Drosophila)	protein-coding	0.125000	0.736318	
mm_92150.1	chr10	67096845	67097045	-	1	NA	NA	NA	43	NM_001204915	28193	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.195000	0.880597	
mm_130875.1	chr15	102244665	102244865	-	1	NA	NA	NA	1735	NM_001042727	19411	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.030000	0.442786	
mm_122368.1	chr14	39429834	39430034	-	1	NA	NA	NA	-42495	NR_131973	432842	Mm.352566	NR_131973		LOC432842	-	uncharacterized LOC432842	ncRNA	0.005000	0.343284	
mm_93300.1	chr10	96664094	96664294	-	1	NA	NA	NA	47193	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.015000	0.502488	
mm_85615.1	chr9	107614399	107614599	-	1	NA	NA	NA	-5258	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.020000	0.497512	-50(CTTTTTAGAGAA,+,0.00)
mm_26703.1	chr3	157751728	157751928	+	1	NA	NA	NA	173235	NM_145953	107869	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	0.000000	0.402985	
mm_105611.1	chr11	106783859	106784059	-	1	NA	NA	NA	-1200	NR_037224	100526469		NR_037224	ENSMUSG00000093273	Mir3064	mir-3064|mmu-mir-3064	microRNA 3064	ncRNA	0.010000	0.358209	
mm_105214.1	chr11	102163938	102164138	-	1	NA	NA	NA	-7631	NM_029649	76547	Mm.46529	NM_029649	ENSMUSG00000020921	Tmem101	2610511E22Rik	transmembrane protein 101	protein-coding	0.020000	0.527363	
mm_5356.1	chr1	25697209	25697409	-	1	NA	NA	NA	132398	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.015000	0.427861	
mm_130459.1	chr15	98593540	98593740	-	1	NA	NA	NA	13993	NM_007405	11512	Mm.157091	NM_007405	ENSMUSG00000022994	Adcy6	AC6|mKIAA0422	adenylate cyclase 6	protein-coding	0.045000	0.601990	
mm_7984.1	chr1	134183561	134183761	-	1	NA	NA	NA	1257	NM_007695	12654	Mm.38274	NM_007695	ENSMUSG00000064246	Chil1	AW208766|Brp39|Chi3l1|Gp39	chitinase-like 1	protein-coding	0.025000	0.522388	
mm_162988.1	chr11	23306604	23306804	+	1	NA	NA	NA	-191	NM_001190401	17847	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.120000	0.805970	
mm_167440.1	chr8	120113778	120113978	-	1	NA	NA	NA	-274	NM_001163762	234797	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.115000	0.666667	
mm_92506.1	chr10	78402979	78403179	-	1	NA	NA	NA	5466	NR_105872	102465547		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	0.010000	0.442786	
mm_33960.1	chr4	137510985	137511185	+	1	NA	NA	NA	-27201	NR_105985	102465616		NR_105985	ENSMUSG00000099134	Mir7018	Gm27606|mmu-mir-7018	microRNA 7018	ncRNA	0.035000	0.626866	
mm_156229.1	chrX	135838958	135839158	+	1	NA	NA	NA	24	NM_001163017	245607	Mm.489763	NM_001163015	ENSMUSG00000072966	Gprasp2	5330440H13Rik|GASP-2|GASP2|Prpl5	G protein-coupled receptor associated sorting protein 2	protein-coding	0.080000	0.681592	
mm_66369.1	chr7	43651448	43651648	-	1	NA	NA	NA	8613	NM_031181	83382	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.030000	0.567164	
mm_15683.1	chr2	163629067	163629267	+	1	NA	NA	NA	-15683	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.015000	0.492537	
mm_66037.1	chr7	30650015	30650215	-	1	NA	NA	NA	113	NM_133693	68035	Mm.401747	NM_133693	ENSMUSG00000036733	Rbm42	1700003D06Rik|3100004P22Rik	RNA binding motif protein 42	protein-coding	0.110000	0.671642	
mm_36462.1	chr4	82505705	82505905	-	1	NA	NA	NA	-26	NM_008687	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.040000	0.502488	
mm_156226.1	chrX	135796134	135796334	+	1	NA	NA	NA	-42800	NM_001163016	245607	Mm.489763	NM_001163015	ENSMUSG00000072966	Gprasp2	5330440H13Rik|GASP-2|GASP2|Prpl5	G protein-coupled receptor associated sorting protein 2	protein-coding	0.070000	0.651741	
mm_164034.1	chr14	79660641	79660841	+	1	NA	NA	NA	1442	NM_001310655	16840	Mm.46561	NM_010701	ENSMUSG00000022025	Cnmd	Bricd3|ChM-I|Chmd|Lect1	chondromodulin	protein-coding	0.015000	0.417910	-32(CTTTTTATACTC,+,0.00),14(GCACATAAAGGG,-,0.00)
mm_15344.1	chr2	156065131	156065331	+	1	NA	NA	NA	18	NM_139151	245865	Mm.330713	NM_139151	ENSMUSG00000038180	Spag4	1700041K21Rik|MNCb-0953|Sun4|mKIAA4118	sperm associated antigen 4	protein-coding	0.095000	0.671642	
mm_25114.1	chr3	101600522	101600722	+	1	NA	NA	NA	4085	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.005000	0.432836	
mm_44071.1	chr5	148777869	148778069	+	1	NA	NA	NA	6	NR_131106	78015	Mm.243839	NR_131106	ENSMUSG00000085740	4930505K14Rik	-	RIKEN cDNA 4930505K14 gene	ncRNA	0.015000	0.522388	
mm_117702.1	chr13	95034203	95034403	-	1	NA	NA	NA	57959	NM_172590	218460	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.035000	0.611940	
mm_83741.1	chr9	51101952	51102152	-	1	NA	NA	NA	26	NM_177702	235345	Mm.72828	NM_177702	ENSMUSG00000032057	4833427G06Rik	-	RIKEN cDNA 4833427G06 gene	protein-coding	0.055000	0.592040	
mm_124656.1	chr15	5242011	5242211	+	1	NA	NA	NA	2076	NM_001136079	19219	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.020000	0.567164	-43(GTCTCTTTAAGG,-,0.00),-41(CTCTTTAAGGTC,+,0.00)
mm_22243.1	chr2	174613931	174614131	-	1	NA	NA	NA	-29503	NM_001099328	100043757	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	ENSMUSG00000050600|OTTMUSG00000017459	zinc finger protein 831	protein-coding	0.030000	0.532338	
mm_82287.1	chr9	7604056	7604256	-	1	NA	NA	NA	-24075	NM_013903	30800	Mm.390121	NM_013903	ENSMUSG00000018620	Mmp20	-	matrix metallopeptidase 20 (enamelysin)	protein-coding	0.020000	0.512438	
mm_121040.1	chr14	80021113	80021313	+	1	NA	NA	NA	20911	NM_001030294	380924	Mm.26456	NM_001030294	ENSMUSG00000022026	Olfm4	GC1|GW112|Gm296|Gm913|OlfD|pPD4	olfactomedin 4	protein-coding	0.020000	0.482587	
mm_117070.1	chr13	59182686	59182886	-	1	NA	NA	NA	361665	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.020000	0.497512	
mm_162225.1	chrX	147403684	147403884	-	1	NA	NA	NA	25408	NM_001306059	16165	Mm.368330	NM_008356	ENSMUSG00000031289	Il13ra2	CD213a2|IL-13R-alpha-2	interleukin 13 receptor, alpha 2	protein-coding	0.005000	0.422886	
mm_60940.1	chr7	46912202	46912402	+	1	NA	NA	NA	7628	NM_021884	22088	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	0.005000	0.437811	41(TCTCTTATAGAG,+,0.00)
mm_141082.1	chr17	25919608	25919808	-	1	NA	NA	NA	6	NM_139154	224624	Mm.328872	NM_139154	ENSMUSG00000025730	Rab40c	RAR3	Rab40C, member RAS oncogene family	protein-coding	0.135000	0.815920	
mm_132030.1	chr16	27388918	27389118	+	1	NA	NA	NA	62	NM_001289436	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.135000	0.751244	
mm_170353.1	chr1	85109685	85109885	-	1	NA	NA	NA	68	NM_213615	381287	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.015000	0.502488	
mm_31079.1	chr4	41517330	41517530	+	1	NA	NA	NA	-7	NR_045726	76992	Mm.440546	NR_045726	ENSMUSG00000036162	Fam219aos	1700066J24Rik	family with sequence similarity 219, member A, opposite strand	ncRNA	0.000000	0.507463	
mm_23117.1	chr3	37639855	37640055	+	1	NA	NA	NA	8	NM_001305442	24063	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty homolog 1 (Drosophila)	protein-coding	0.125000	0.726368	
mm_75583.1	chr8	61533487	61533687	-	1	NA	NA	NA	45853	NM_145595	234309	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.050000	0.621891	
mm_73060.1	chr8	94386092	94386292	+	1	NA	NA	NA	-308	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.080000	0.691542	
mm_49913.1	chr6	39033405	39033605	+	1	NA	NA	NA	34081	NR_040523	69986	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.020000	0.462687	
mm_105841.1	chr11	113683843	113684043	-	1	NA	NA	NA	208	NM_138598	28081	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0.145000	0.766169	
mm_19866.1	chr2	114047215	114047415	-	1	NA	NA	NA	5560	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.005000	0.437811	
mm_127578.1	chr15	102296321	102296521	+	1	NA	NA	NA	128	NM_001014976	105988	Mm.288324	NM_001014976	ENSMUSG00000058290	Espl1	AL024103|AU045071|Cerp|ESP1|PRCE|SSE	extra spindle pole bodies 1, separase	protein-coding	0.095000	0.661692	
mm_19167.1	chr2	84333451	84333651	-	1	NA	NA	NA	91715	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.005000	0.398010	
mm_51367.1	chr6	72699047	72699247	+	1	NA	NA	NA	69316	NR_040421	100038714	Mm.321330	NR_040421		Gm15401	ENSMUSG00000072999|OTTMUSG00000021199	predicted gene 15401	ncRNA	0.010000	0.507463	
mm_138198.1	chr17	34291755	34291955	+	1	NA	NA	NA	-4084	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.020000	0.542289	
mm_125595.1	chr15	59648484	59648684	+	1	NA	NA	NA	-70	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.070000	0.616915	
mm_94464.1	chr11	6474826	6475026	+	1	NA	NA	NA	1150	NM_011221	19291	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0.075000	0.616915	
mm_92579.1	chr10	79995234	79995434	-	1	NA	NA	NA	-2274	NM_001347081	27403	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.020000	0.452736	
mm_54914.1	chr6	47798337	47798537	-	1	NA	NA	NA	5215	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.030000	0.522388	60(GCTTTTAAAAAA,+,0.00)
mm_145005.1	chr18	38418980	38419180	+	1	NA	NA	NA	105	NM_022996	65113	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.150000	0.751244	
mm_168002.1	chrY	847649	847849	-	1	NA	NA	NA	29036	NM_011667	22202	Mm.422949	NM_011667	ENSMUSG00000069053	Uba1y	A1s9Y-1|Sby|Ube-2|Ube1ay|Ube1y|Ube1y-1|Ube1y1	ubiquitin-activating enzyme, Chr Y	protein-coding	0.010000	0.472637	-34(GGATATTTAAGG,-,0.00)
mm_57470.1	chr6	125231620	125231820	-	1	NA	NA	NA	140	NM_145391	213233	Mm.296902	NM_145391	ENSMUSG00000038213	Tapbpl	BC017613|TAPBPL-R|Tapbplr	TAP binding protein-like	protein-coding	0.025000	0.562189	
mm_131393.1	chr16	14317186	14317386	+	1	NA	NA	NA	46	NM_025345	66086	Mm.42072	NM_025345	ENSMUSG00000022677	Fopnl	0610037P05Rik	Fgfr1op N-terminal like	protein-coding	0.095000	0.587065	
mm_143592.1	chr17	74489280	74489480	-	1	NA	NA	NA	-113	NM_026417	67864	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	0.035000	0.412935	66(GTTTTTATAAAC,+,0.00)
mm_41108.1	chr5	87775715	87775915	+	1	NA	NA	NA	1365	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.005000	0.368159	-50(GTTTTTATAGGA,+,0.00)
mm_155178.1	chrX	53724542	53724742	+	1	NA	NA	NA	-189	NM_029142	75013	Mm.336332	NM_029142	ENSMUSG00000055555	4930502E18Rik	Ct55	RIKEN cDNA 4930502E18 gene	protein-coding	0.020000	0.363184	-34(ACCTATAAAAGT,-,0.00)
mm_38988.1	chr4	151062207	151062407	-	1	NA	NA	NA	-4354	NM_009498	22319	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	0.065000	0.537313	
mm_108260.1	chr12	78481220	78481420	+	1	NA	NA	NA	-210215	NM_027597	70897	Mm.56514	NM_027597	ENSMUSG00000056987	Fam71d	4921509E07Rik|4930516C23Rik|GARI-L2	family with sequence similarity 71, member D	protein-coding	0.000000	0.328358	
mm_126330.1	chr15	79892316	79892516	+	1	NA	NA	NA	8	NM_030255	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.020000	0.611940	
mm_65276.1	chr7	24333839	24334039	-	1	NA	NA	NA	26	NM_001163810	69301	Mm.144202	NM_027028	ENSMUSG00000055826	Tescl	1700008P20Rik	tescalcin-like	protein-coding	0.070000	0.597015	
mm_107654.1	chr12	52746610	52746810	+	1	NA	NA	NA	47327	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.005000	0.288557	-70(CACTTTTAAAGG,-,0.00),-69(ACTTTTAAAGGA,+,0.00)
mm_91553.1	chr10	39926836	39927036	-	1	NA	NA	NA	-13	NM_001163503	72045	Mm.235981	NM_001163503	ENSMUSG00000039339	Mfsd4b2	2010001E11Rik|Naglt1b	major facilitator superfamily domain containing 4B2	protein-coding	0.095000	0.716418	
mm_30228.1	chr3	145649881	145650081	-	1	NA	NA	NA	4	NM_010516	16007	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0.105000	0.651741	-32(CATTATAAAGGG,-,0.00)
mm_68667.1	chr7	118855919	118856119	-	1	NA	NA	NA	-21	NM_023197	66356	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0.145000	0.726368	
mm_169960.1	chr16	94243290	94243490	-	1	NA	NA	NA	44466	NM_139145	110948	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.035000	0.527363	
mm_159797.1	chr5	112344062	112344262	+	1	NA	NA	NA	1067	NM_138646	192232	Mm.238043	NM_138646	ENSMUSG00000042328	Hps4	2010205O06Rik|AU040608|BLOC-3|C130020P05Rik|le|mKIAA1667	Hermansky-Pudlak syndrome 4	protein-coding	0.015000	0.452736	
mm_154345.1	chrM	5272	5472	+	1	NA	NA	NA	NA	NA									0.025000	0.383085	
mm_134606.1	chr16	20716012	20716212	-	1	NA	NA	NA	524	NM_009900	12724	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	0.125000	0.766169	
mm_5879.1	chr1	53824970	53825170	-	1	NA	NA	NA	-24354	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.010000	0.447761	
mm_90974.1	chr10	13474585	13474785	-	1	NA	NA	NA	-289	NM_001195065	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.025000	0.537313	
mm_97281.1	chr11	76133846	76134046	+	1	NA	NA	NA	45684	NM_026664	68299	Mm.46397	NM_026664	ENSMUSG00000017288	Vps53	2010002A08Rik|2310040I21Rik|3100002B05Rik|Hccs1	VPS53 GARP complex subunit	protein-coding	0.005000	0.457711	
mm_119952.1	chr14	55054773	55054973	+	1	NA	NA	NA	16411	NR_073535	100151693	Mm.378403	NR_073535	ENSMUSG00000072492	Gm10364	EG545052|ENSMUSG00000072492	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.005000	0.457711	
mm_52792.1	chr6	121263999	121264199	+	1	NA	NA	NA	18193	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.015000	0.388060	-98(GGTTATATAAGA,-,0.00)
mm_126052.1	chr15	76948686	76948886	+	1	NA	NA	NA	242	NM_054099	117171	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0.075000	0.601990	
mm_155395.1	chrX	72918538	72918738	+	1	NA	NA	NA	117	NM_010941	18194	Mm.38792	NM_010941	ENSMUSG00000031349	Nsdhl	AI747449|Bpa|H105E3|Str|XAP104	NAD(P) dependent steroid dehydrogenase-like	protein-coding	0.030000	0.522388	-34(CAGTAGAAAAGG,-,0.00)
mm_18127.1	chr2	45004443	45004643	-	1	NA	NA	NA	18634	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.005000	0.402985	
mm_48961.1	chr6	4541343	4541543	+	1	NA	NA	NA	35825	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.000000	0.318408	
mm_133599.1	chr16	91465040	91465240	+	1	NA	NA	NA	36	NR_077219	100503120	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.060000	0.592040	
mm_89021.1	chr10	82354161	82354361	+	1	NA	NA	NA	-112986	NM_001105557	237411		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding	0.025000	0.562189	
mm_34909.1	chr4	155704783	155704983	+	1	NA	NA	NA	68	NM_026899	68991	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0.035000	0.522388	
mm_40372.1	chr5	52190577	52190777	+	1	NA	NA	NA	-4	NR_015537	414108	Mm.383512	NR_015537	ENSMUSG00000097145	9230114K14Rik	-	RIKEN cDNA 9230114K14 gene	ncRNA	0.085000	0.601990	
mm_137902.1	chr17	31854803	31855003	+	1	NA	NA	NA	889	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.060000	0.636816	
mm_23621.1	chr3	65806509	65806709	+	1	NA	NA	NA	140381	NM_001166659	624866	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	0.000000	0.383085	
mm_53709.1	chr6	143183219	143183419	+	1	NA	NA	NA	16089	NM_029250	75320	Mm.272548	NM_029250	ENSMUSG00000030275	Etnk1	1110061E11Rik|4930555L11Rik|AI195356|AI841245|C80956|D6Ertd3e|EKI1	ethanolamine kinase 1	protein-coding	0.000000	0.462687	
mm_116202.1	chr13	32338459	32338659	-	1	NA	NA	NA	-15	NM_146041	218138	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	0.135000	0.741294	
mm_100569.1	chr11	120762693	120762893	+	1	NA	NA	NA	21411	NM_009053	19719	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.025000	0.532338	
mm_30276.1	chr3	146839266	146839466	-	1	NA	NA	NA	-13001	NM_001302957	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.035000	0.457711	
mm_46624.1	chr5	108405462	108405662	-	1	NA	NA	NA	17189	NM_008806	18587	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0.005000	0.507463	
mm_56116.1	chr6	87517290	87517490	-	1	NA	NA	NA	15869	NM_001037727	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.005000	0.462687	
mm_140823.1	chr17	23610547	23610747	-	1	NA	NA	NA	9821	NM_001289482	332221	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	0.050000	0.587065	
mm_32874.1	chr4	118527138	118527338	+	1	NA	NA	NA	-37	NM_025572	66451	Mm.34431	NM_025572	ENSMUSG00000028536	2610528J11Rik	TEMP	RIKEN cDNA 2610528J11 gene	protein-coding	0.035000	0.616915	
mm_94109.1	chr10	128589587	128589787	-	1	NA	NA	NA	-186	NM_010153	13867	Mm.373043	NM_010153	ENSMUSG00000018166	Erbb3	C76256|Erbb-3|Erbb3r|Her3	erb-b2 receptor tyrosine kinase 3	protein-coding	0.080000	0.681592	
mm_80751.1	chr9	95192824	95193024	+	1	NA	NA	NA	214346	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.015000	0.547264	
mm_34367.1	chr4	144892996	144893196	+	1	NA	NA	NA	-41	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.040000	0.422886	
mm_49499.1	chr6	29760817	29761017	+	1	NA	NA	NA	-7526	NM_021414	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.005000	0.487562	
mm_79199.1	chr9	48495329	48495529	+	1	NA	NA	NA	86	NM_001004191	434402	Mm.386950	NM_001004191	ENSMUSG00000042293	Gm5617	EG434402	predicted gene 5617	protein-coding	0.155000	0.671642	
mm_96340.1	chr11	66911893	66912093	+	1	NA	NA	NA	2	NM_178656	193003	Mm.440256	NM_178656	ENSMUSG00000048070	Pirt	A530088H08Rik	phosphoinositide-interacting regulator of transient receptor potential channels	protein-coding	0.030000	0.577114	
mm_167792.1	chr9	123924237	123924437	-	1	NA	NA	NA	44355	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.040000	0.542289	
mm_136020.1	chr16	76324689	76324889	-	1	NA	NA	NA	48260	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.000000	0.318408	49(CCTTTACTAGTG,+,0.00)
mm_167856.1	chrX	12060411	12060611	+	1	NA	NA	NA	20042	NM_175045	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.010000	0.467662	-21(CCTTTTCTACAG,+,0.00)
mm_86323.1	chr9	123021464	123021664	-	1	NA	NA	NA	238	NM_001164823	66079	Mm.482265	NM_025339	ENSMUSG00000066233	Tmem42	0610027O18Rik|4933429E06Rik|AV003444|D9Ertd662e	transmembrane protein 42	protein-coding	0.140000	0.820896	
mm_122248.1	chr14	33978671	33978871	-	1	NA	NA	NA	-7	NM_001013777	382867	Mm.343728	NM_001013777	ENSMUSG00000044519	Zfp488	Gm1206|Znf488	zinc finger protein 488	protein-coding	0.080000	0.666667	
mm_121683.1	chr14	13232800	13233000	-	1	NA	NA	NA	51738	NR_121589	328354	Mm.252404	NM_177813	ENSMUSG00000051729	Gm5087	C630025C03|EG328354	predicted gene 5087	ncRNA	0.005000	0.333333	
mm_32172.1	chr4	100479037	100479237	+	1	NA	NA	NA	270	NM_001033773	381534	Mm.318133	NM_001033773	ENSMUSG00000069733	Ube2u	-	ubiquitin-conjugating enzyme E2U (putative)	protein-coding	0.020000	0.447761	
mm_121069.1	chr14	96107657	96107857	+	1	NA	NA	NA	226491	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	0.025000	0.487562	
mm_122908.1	chr14	54953805	54954005	-	1	NA	NA	NA	-4763	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.020000	0.517413	
mm_15070.1	chr2	153107606	153107806	+	1	NA	NA	NA	-762	NM_001172117	15162	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.025000	0.487562	
mm_123759.1	chr14	70205749	70205949	-	1	NA	NA	NA	173	NM_001271407	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.070000	0.701493	
mm_137082.1	chr17	21450342	21450542	+	1	NA	NA	NA	68	NM_009558	22709	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	0.045000	0.522388	
mm_22267.1	chr2	178414384	178414584	-	1	NA	NA	NA	-21	NM_001085501	228966	Mm.472736	NM_001085501	ENSMUSG00000049999	Ppp1r3d	2610024M03Rik|Gm359	protein phosphatase 1, regulatory subunit 3D	protein-coding	0.155000	0.766169	
mm_33059.1	chr4	123201324	123201524	+	1	NA	NA	NA	-129	NM_001085502	230718	Mm.354635	NM_001085502	ENSMUSG00000054958	Nt5c1a	Cn1a|Gm49	5'-nucleotidase, cytosolic IA	protein-coding	0.090000	0.731343	
mm_528.1	chr1	37687244	37687444	+	1	NA	NA	NA	32467	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.040000	0.562189	
mm_138058.1	chr17	33928186	33928386	+	1	NA	NA	NA	-1608	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.005000	0.447761	
mm_80851.1	chr9	98369656	98369856	+	1	NA	NA	NA	-53205	NM_011254	19659	Mm.279741	NM_011254	ENSMUSG00000046402	Rbp1	CRBPI|Crbp|Rbp-1	retinol binding protein 1, cellular	protein-coding	0.005000	0.427861	
mm_145410.1	chr18	57472372	57472572	+	1	NA	NA	NA	3986	NM_001134697	629147	Mm.57415	NM_001134697	ENSMUSG00000069372	Ctxn3	ENSMUSG00000069372	cortexin 3	protein-coding	0.015000	0.437811	72(ATTTTTAAAGGC,+,0.00)
mm_38480.1	chr4	140702323	140702523	-	1	NA	NA	NA	950	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.160000	0.796020	
mm_38601.1	chr4	141859462	141859662	-	1	NA	NA	NA	-13203	NM_001033875	76701	Mm.489680	NM_001033875	ENSMUSG00000062478	Ctrc	1810044E12Rik	chymotrypsin C (caldecrin)	protein-coding	0.040000	0.592040	
mm_93403.1	chr10	107912158	107912358	-	1	NA	NA	NA	-124	NM_001177567	628870	Mm.336090	NM_001177567	ENSMUSG00000091455	Otogl	EG628870|Gm6924	otogelin-like	protein-coding	0.015000	0.462687	
mm_29610.1	chr3	121263148	121263348	-	1	NA	NA	NA	68	NM_178936	99887	Mm.26088	NM_178936	ENSMUSG00000028132	Tmem56	4930577M16Rik|AU018104|AW109744|C730036B01Rik	transmembrane protein 56	protein-coding	0.060000	0.542289	-35(GGGCATATAAGA,-,0.00)
mm_170683.1	chr2	127208354	127208554	+	1	NA	NA	NA	50	NM_177214	320632	Mm.215860	NM_177214	ENSMUSG00000003660	Snrnp200	A330064G03Rik|Ascc3l1|BC011390|HELIC2|U5-200-KD|U5-200KD	small nuclear ribonucleoprotein 200 (U5)	protein-coding	0.095000	0.587065	
mm_38897.1	chr4	149854369	149854569	-	1	NA	NA	NA	-80202	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.050000	0.517413	
mm_91050.1	chr10	18743842	18744042	-	1	NA	NA	NA	-184	NM_001033258	215821	Mm.40491	NM_001033258	ENSMUSG00000019852	Arfgef3	9630004D11|B930094H20Rik|BIG3|D10Bwg1379e|mKIAA1244	ARFGEF family member 3	protein-coding	0.040000	0.616915	
mm_78645.1	chr9	40285993	40286193	+	1	NA	NA	NA	16877	NM_178227	235281	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.005000	0.407960	
mm_89126.1	chr10	84917537	84917737	+	1	NA	NA	NA	24	NM_183172	237422	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0.100000	0.726368	
mm_134762.1	chr16	23374960	23375160	-	1	NA	NA	NA	-54073	NM_001004151	239766	Mm.208751	NM_001004151	ENSMUSG00000033383	Rtp1	Gm1766|Gm604	receptor transporter protein 1	protein-coding	0.005000	0.427861	
mm_28458.1	chr3	90692625	90692825	-	1	NA	NA	NA	2996	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.010000	0.442786	
mm_83351.1	chr9	44344026	44344226	-	1	NA	NA	NA	102	NM_013551	15288	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	0.105000	0.726368	
mm_119363.1	chr14	41116617	41116817	+	1	NA	NA	NA	11684	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.020000	0.507463	
mm_18697.1	chr2	71546335	71546535	-	1	NA	NA	NA	319	NM_010054	13392	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0.050000	0.587065	
mm_163173.1	chr11	87794659	87794859	+	1	NA	NA	NA	975	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.005000	0.572139	
mm_158812.1	chrX	167307848	167308048	-	1	NA	NA	NA	22623	NM_001290757	170743	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	0.010000	0.368159	
mm_31960.1	chr4	86885926	86886126	+	1	NA	NA	NA	11612	NM_139306	230379	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0.045000	0.517413	
mm_63982.1	chr7	139992552	139992752	+	1	NA	NA	NA	-90	NM_001291066	11501	Mm.15969	NM_007403	ENSMUSG00000025473	Adam8	ADAM 8|CD156|CD156a|E430039A18Rik|MS2	a disintegrin and metallopeptidase domain 8	protein-coding	0.030000	0.547264	
mm_171884.1	chr5	33275019	33275219	-	1	NA	NA	NA	-115	NM_001198860	13016	Mm.7286	NM_013502	ENSMUSG00000037373	Ctbp1	BARS|CtBP3/BARS|D4S115h|D5H4S115|D5H4S115E	C-terminal binding protein 1	protein-coding	0.110000	0.766169	
mm_543.1	chr1	38017953	38018153	+	1	NA	NA	NA	20043	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.025000	0.502488	
mm_139142.1	chr17	47511785	47511985	+	1	NA	NA	NA	6834	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.020000	0.542289	
mm_17095.1	chr2	23040089	23040289	-	1	NA	NA	NA	52	NM_001077192	11308	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.065000	0.656716	
mm_54124.1	chr6	18407779	18407979	-	1	NA	NA	NA	106946	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding	0.000000	0.313433	
mm_80709.1	chr9	92250076	92250276	+	1	NA	NA	NA	-18	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.030000	0.557214	
mm_97621.1	chr11	78957319	78957519	+	1	NA	NA	NA	27505	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.035000	0.601990	
mm_159385.1	chr3	90726815	90727015	+	1	NA	NA	NA	9	NM_207263	384997	Mm.316644	NM_207263	ENSMUSG00000042250	Pglyrp4	Gm1478|Gm413	peptidoglycan recognition protein 4	protein-coding	0.005000	0.507463	
mm_30368.1	chr3	152176266	152176466	-	1	NA	NA	NA	-10466	NM_016867	54120	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.005000	0.417910	
mm_121121.1	chr14	101840464	101840664	+	1	NA	NA	NA	-59	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.030000	0.472637	
mm_69069.1	chr7	126949774	126949974	-	1	NA	NA	NA	-293	NM_001039645	233879	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0.090000	0.686567	
mm_138711.1	chr17	36121582	36121782	+	1	NA	NA	NA	-238	NR_046286	15024	Mm.426031	NM_010395	ENSMUSG00000079491	H2-T10	H-2T10	histocompatibility 2, T region locus 10	protein-coding	0.005000	0.477612	
mm_14570.1	chr2	135312293	135312493	+	1	NA	NA	NA	-93437	NR_039540	100628568		NR_039540	ENSMUSG00000092830	Mir3963	mmu-mir-3963|mu-mir-3963	microRNA 3963	ncRNA	0.010000	0.417910	23(TTGTTTTAAAGG,-,0.00)
mm_127902.1	chr15	9507690	9507890	-	1	NA	NA	NA	22086	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.015000	0.402985	
mm_118934.1	chr14	27115080	27115280	+	1	NA	NA	NA	-28813	NM_001289686	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.065000	0.621891	77(TCTTTTAAACTG,+,0.00)
mm_26581.1	chr3	149326910	149327110	+	1	NA	NA	NA	52273	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.005000	0.368159	
mm_44155.1	chr5	150496379	150496579	+	1	NA	NA	NA	5740	NR_024513	194292	Mm.300184	NR_024513		Gm5	Gm1812	predicted gene 5	ncRNA	0.025000	0.552239	
mm_136112.1	chr16	85542486	85542686	-	1	NA	NA	NA	7787	NM_144853	224405	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding	0.005000	0.492537	
mm_104421.1	chr11	94782603	94782803	-	1	NA	NA	NA	0	NM_001034896	544806	Mm.379774	NM_001034896	ENSMUSG00000075610	Tmem92	AU016430|Tmem92-ps	transmembrane protein 92	protein-coding	0.000000	0.517413	-34(CTCTATTTAAGC,-,0.00)
mm_44165.1	chr5	150756208	150756408	+	1	NA	NA	NA	82481	NM_001346503	100710	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	0.005000	0.358209	
mm_124674.1	chr15	6422214	6422414	+	1	NA	NA	NA	-23019	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.005000	0.393035	-90(TCCCTTTTAAGG,-,0.00),-88(CCTTTTAAGGTA,+,0.00),31(TGCTATAAAAAC,-,0.00)
mm_29323.1	chr3	108017753	108017953	-	1	NA	NA	NA	120	NM_010358	14862	Mm.37199	NM_010358	ENSMUSG00000058135	Gstm1	Gstb-1|Gstb1	glutathione S-transferase, mu 1	protein-coding	0.010000	0.517413	
mm_1499.1	chr1	72221663	72221863	+	1	NA	NA	NA	-9456	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.005000	0.502488	
mm_27689.1	chr3	65974656	65974856	-	1	NA	NA	NA	-16531	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.095000	0.656716	
mm_78614.1	chr9	37545162	37545362	+	1	NA	NA	NA	6007	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.045000	0.621891	
mm_64199.1	chr7	141468692	141468892	+	1	NA	NA	NA	3	NM_001111050	12476	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0.015000	0.567164	
mm_76658.1	chr8	93229464	93229664	-	1	NA	NA	NA	55	NM_133660	13897	Mm.63490	NM_133660	ENSMUSG00000061959	Ces1e	Eg|Es-22|Es22|egasyn	carboxylesterase 1E	protein-coding	0.000000	0.442786	
mm_122239.1	chr14	33370042	33370242	-	1	NA	NA	NA	40882	NM_001310452	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.000000	0.587065	
mm_116407.1	chr13	41425148	41425348	-	1	NA	NA	NA	62112	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.000000	0.487562	
mm_155811.1	chrX	99820092	99820292	+	1	NA	NA	NA	-877	NM_001081283	620592	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	0.080000	0.706468	
mm_26322.1	chr3	142530193	142530393	+	1	NA	NA	NA	-43	NM_001083312	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.025000	0.482587	
mm_29215.1	chr3	107038221	107038421	-	1	NA	NA	NA	-1183	NR_033498	229694	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	0.010000	0.393035	
mm_8024.1	chr1	135105241	135105441	-	1	NA	NA	NA	-65	NM_001033409	329252	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0.085000	0.666667	
mm_14663.1	chr2	138278302	138278502	+	1	NA	NA	NA	-91	NM_145534	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.010000	0.427861	-35(CCTTTAATATCA,+,0.00)
mm_127202.1	chr15	99126529	99126729	+	1	NA	NA	NA	-216	NM_139140	72572	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.205000	0.835821	
mm_115631.1	chr13	12106880	12107080	-	1	NA	NA	NA	-35	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.080000	0.721393	
mm_148646.1	chr19	5490482	5490682	+	1	NA	NA	NA	127	NM_007687	12631	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.105000	0.651741	
mm_155480.1	chrX	73675408	73675608	+	1	NA	NA	NA	2375	NM_001142809	102857	Mm.274553	NM_133987	ENSMUSG00000019558	Slc6a8	AA589632|CRT|CRTR|CT1|CTR5|Creat	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	protein-coding	0.010000	0.577114	
mm_101529.1	chr11	33162234	33162434	-	1	NA	NA	NA	872	NM_001252261	18148	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	0.045000	0.582090	
mm_60203.1	chr7	43429975	43430175	+	1	NA	NA	NA	-26	NM_177693	233187	Mm.267027	NM_177693	ENSMUSG00000004613	Lim2	19kDa|4833403J20|MP19|To3	lens intrinsic membrane protein 2	protein-coding	0.010000	0.587065	
mm_62774.1	chr7	112361539	112361739	+	1	NA	NA	NA	-6669	NM_027587	100504195	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	0.005000	0.393035	
mm_170148.1	chr17	45563414	45563614	+	1	NA	NA	NA	-638	NM_028662	73836	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.030000	0.512438	
mm_120023.1	chr14	55765878	55766078	+	1	NA	NA	NA	16	NM_008519	16995	Mm.20853	NM_008519	ENSMUSG00000046908	Ltb4r1	BLT1|BLTR|Ltb4r|mBLTR	leukotriene B4 receptor 1	protein-coding	0.010000	0.527363	
mm_139353.1	chr17	50509477	50509677	+	1	NA	NA	NA	30	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.155000	0.791045	
mm_162607.1	chr1	183289745	183289945	+	1	NA	NA	NA	7163	NM_027861	71678	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	0.010000	0.432836	
mm_111533.1	chr12	100724970	100725170	-	1	NA	NA	NA	50	NM_001330702	73086	Mm.220417	NM_153587	ENSMUSG00000021180	Rps6ka5	3110005L17Rik|6330404E13Rik|AI854034|MSK1|MSPK1|RLPK|RLSK|S6K-alpha-5	ribosomal protein S6 kinase, polypeptide 5	protein-coding	0.080000	0.706468	
mm_17029.1	chr2	19553815	19554015	-	1	NA	NA	NA	-5	NM_027600	70909	Mm.158488	NM_027600	ENSMUSG00000026734	4921504E06Rik	4921522E24Rik	RIKEN cDNA 4921504E06 gene	protein-coding	0.050000	0.606965	
mm_52831.1	chr6	121363602	121363802	+	1	NA	NA	NA	17005	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.005000	0.507463	
mm_18727.1	chr2	72963712	72963912	-	1	NA	NA	NA	15469	NM_001098425	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.010000	0.422886	
mm_53550.1	chr6	136861755	136861955	+	1	NA	NA	NA	-4255	NM_026639	109978	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	0.010000	0.477612	
mm_172227.1	chr6	67266959	67267159	+	1	NA	NA	NA	80	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.095000	0.646766	
mm_164154.1	chr15	64921371	64921571	-	1	NA	NA	NA	825	NM_001331075	11514	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	0.100000	0.666667	
mm_95972.1	chr11	58954586	58954786	+	1	NA	NA	NA	1	NM_178218	319162	Mm.212549	NM_178218	ENSMUSG00000078851	Hist3h2a	-	histone cluster 3, H2a	protein-coding	0.050000	0.467662	
mm_27373.1	chr3	50442613	50442813	-	1	NA	NA	NA	900	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.363184	
mm_118706.1	chr14	22164844	22165044	+	1	NA	NA	NA	145232	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.000000	0.427861	-83(AGCTCTTAAAGC,-,0.00),-82(GCTCTTAAAGCC,+,0.00)
mm_33524.1	chr4	130932039	130932239	+	1	NA	NA	NA	-12246	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.005000	0.457711	
mm_113183.1	chr13	24905541	24905741	+	1	NA	NA	NA	41	NR_045182	73326	Mm.458692	NR_045182		4932702P03Rik	1700047I16Rik	RIKEN cDNA 4932702P03 gene	ncRNA	0.045000	0.557214	
mm_125891.1	chr15	75865986	75866186	+	1	NA	NA	NA	3747	NM_026960	69146	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	0.010000	0.547264	
mm_107563.1	chr12	43460068	43460268	+	1	NA	NA	NA	749900	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.010000	0.308458	
mm_98991.1	chr11	98764897	98765097	+	1	NA	NA	NA	10380	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.000000	0.507463	
mm_11008.1	chr2	26580917	26581117	+	1	NA	NA	NA	-39	NM_178444	353156	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0.015000	0.592040	
mm_66247.1	chr7	35555952	35556152	-	1	NA	NA	NA	-124	NM_033080	110959	Mm.410206	NM_033080	ENSMUSG00000034875	Nudt19	D7Rp2|D7Rp2-r|D7Rp2-s|D7Rp2e|RP2-r|RP2-s	nudix (nucleoside diphosphate linked moiety X)-type motif 19	protein-coding	0.035000	0.552239	
mm_109457.1	chr12	111160168	111160368	+	1	NA	NA	NA	-6102	NM_001286122	22031	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn	TNF receptor-associated factor 3	protein-coding	0.025000	0.482587	
mm_108962.1	chr12	102398141	102398341	+	1	NA	NA	NA	41572	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.020000	0.542289	
mm_157569.1	chrX	52548661	52548861	-	1	NA	NA	NA	-27082	NR_045367	100504594	Mm.447008	NR_045367	ENSMUSG00000055110	A630012P03Rik	-	RIKEN cDNA A630012P03 gene	ncRNA	0.010000	0.393035	-6(TTTTTTAAACCC,+,0.00)
mm_3901.1	chr1	161705971	161706171	+	1	NA	NA	NA	82424	NM_001205243	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.015000	0.532338	
mm_143233.1	chr17	63499389	63499589	-	1	NA	NA	NA	1091	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.130000	0.796020	
mm_97043.1	chr11	72314347	72314547	+	1	NA	NA	NA	3	NM_001099688	628100	Mm.390365	NM_001099688	ENSMUSG00000070388	Fbxo39	1700010H23Rik	F-box protein 39	protein-coding	0.105000	0.716418	
mm_11824.1	chr2	44927289	44927489	+	1	NA	NA	NA	-65767	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.130000	0.756219	
mm_34502.1	chr4	148664231	148664431	+	1	NA	NA	NA	21014	NM_001085505	230909	Mm.332067	NM_001085505	ENSMUSG00000070577	Gm572	b2b1167Clo	predicted gene 572	protein-coding	0.005000	0.537313	
mm_60339.1	chr7	44335727	44335927	+	1	NA	NA	NA	25563	NM_001034115	243961	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3/ankyrin domain gene 1	protein-coding	0.120000	0.810945	
mm_8308.1	chr1	144077319	144077519	-	1	NA	NA	NA	-73270	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.015000	0.363184	69(ATATTTAAAAGG,-,0.00)
mm_19567.1	chr2	101628886	101629086	-	1	NA	NA	NA	0	NM_026592	68170	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding	0.035000	0.492537	18(CCTTATAGGCTG,+,0.00)
mm_91801.1	chr10	53631590	53631790	-	1	NA	NA	NA	-1251	NM_027830	71567	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0.010000	0.472637	
mm_76368.1	chr8	84795219	84795419	-	1	NA	NA	NA	5019	NM_010906	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.020000	0.432836	
mm_143546.1	chr17	74017047	74017247	-	1	NA	NA	NA	30769	NM_053188	94224	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.005000	0.348259	
mm_19256.1	chr2	84774735	84774935	-	1	NA	NA	NA	594	NM_009776	12258	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.030000	0.646766	
mm_68532.1	chr7	113347295	113347495	-	1	NA	NA	NA	21944	NM_133700	68815	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0.015000	0.427861	
mm_63911.1	chr7	139214628	139214828	+	1	NA	NA	NA	-1421	NM_001162540	57740	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	0.020000	0.582090	
mm_151016.1	chr19	46761548	46761748	+	1	NA	NA	NA	39	NM_001102471	94219	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0.100000	0.691542	
mm_10063.1	chr1	193508369	193508569	-	1	NA	NA	NA	-939	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.000000	0.507463	57(CCTTTTATGAGG,+,0.00)
mm_78010.1	chr9	13433052	13433252	+	1	NA	NA	NA	1791	NR_028271	18689	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.005000	0.313433	
mm_84102.1	chr9	58279823	58280023	-	1	NA	NA	NA	26759	NM_026942	69106	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.020000	0.532338	
mm_24857.1	chr3	95882634	95882834	+	1	NA	NA	NA	-506	NM_001033302	229599	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	0.100000	0.681592	
mm_66890.1	chr7	59281088	59281288	-	1	NA	NA	NA	42961	NR_015479	330544	Mm.9002	NR_015479	ENSMUSG00000100826	C230091D08Rik	-	RIKEN cDNA C230091D08 gene	ncRNA	0.015000	0.368159	
mm_21525.1	chr2	163639170	163639370	-	1	NA	NA	NA	-5580	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.015000	0.477612	-68(TGCTCTTAAAGG,-,0.00),-67(GCTCTTAAAGGT,+,0.00)
mm_137277.1	chr17	24720085	24720285	+	1	NA	NA	NA	122	NM_008503	16898	Mm.157452	NM_008503	ENSMUSG00000044533	Rps2	Llrep3|S4	ribosomal protein S2	protein-coding	0.060000	0.547264	
mm_27918.1	chr3	79531737	79531937	-	1	NA	NA	NA	35842	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.015000	0.467662	
mm_84884.1	chr9	79759380	79759580	-	1	NA	NA	NA	373	NM_009945	12866	Mm.152627	NM_009945	ENSMUSG00000032330	Cox7a2	COX7AL|Cox7a3|CoxVIIa-L	cytochrome c oxidase subunit VIIa 2	protein-coding	0.055000	0.557214	
mm_169489.1	chr14	73955518	73955718	-	1	NA	NA	NA	-399909	NR_046059	74425	Mm.399498	NR_046059		4933402J15Rik	-	RIKEN cDNA 4933402J15 gene	ncRNA	0.030000	0.452736	
mm_100842.1	chr11	5741028	5741228	-	1	NA	NA	NA	48	NM_178623	72046	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	0.150000	0.800995	
mm_2346.1	chr1	92906898	92907098	+	1	NA	NA	NA	9	NM_175118	67446	Mm.46179	NM_175118	ENSMUSG00000047067	Dusp28	0710001B24Rik|AV005521	dual specificity phosphatase 28	protein-coding	0.090000	0.666667	
mm_144183.1	chr18	7613885	7614085	+	1	NA	NA	NA	12878	NM_001081287	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0.010000	0.407960	
mm_132415.1	chr16	35068469	35068669	+	1	NA	NA	NA	46148	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.005000	0.407960	
mm_41578.1	chr5	93172937	93173137	+	1	NA	NA	NA	33458	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.035000	0.512438	
mm_60080.1	chr7	34095399	34095599	+	1	NA	NA	NA	68	NM_001099330	100043868	Mm.465197	NM_001099330	ENSMUSG00000078752	Scgb1b30	Abpa30|Gm12776|OTTMUSG00000008394	secretoglobin, family 1B, member 30	protein-coding	0.010000	0.572139	-33(AGTTATAAAAGG,-,0.00)
mm_1741.1	chr1	75450408	75450608	+	1	NA	NA	NA	-2	NM_183022	241118	Mm.110790	NM_183022	ENSMUSG00000033007	Asic4	Accn4|BNAC4	acid-sensing (proton-gated) ion channel family member 4	protein-coding	0.080000	0.636816	
mm_83125.1	chr9	40423362	40423562	-	1	NA	NA	NA	32302	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.015000	0.472637	
mm_78095.1	chr9	18478260	18478460	+	1	NA	NA	NA	-35	NM_028557	73503	Mm.160088	NM_028557	ENSMUSG00000038691	Mbd3l1	1700070G05Rik|1700095H13Rik|Mbd3l	methyl-CpG binding domain protein 3-like 1	protein-coding	0.015000	0.388060	
mm_29821.1	chr3	129332620	129332820	-	1	NA	NA	NA	29	NM_007934	13809	Mm.1193	NM_007934	ENSMUSG00000028024	Enpep	6030431M22Rik|APA|Bp-1/6C3|Ly-51|Ly51	glutamyl aminopeptidase	protein-coding	0.045000	0.542289	-31(GTTTATATAGCG,+,0.00)
mm_160193.1	chr7	60450068	60450268	-	1	NA	NA	NA	-309949	NM_001082962	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding	0.010000	0.542289	
mm_159637.1	chr4	139967679	139967879	-	1	NA	NA	NA	-159	NR_035519	100316727		NR_035519	ENSMUSG00000089294	Mir2139	mmu-mir-2139	microRNA 2139	ncRNA	0.025000	0.616915	
mm_107366.1	chr12	32850443	32850643	+	1	NA	NA	NA	26427	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.035000	0.457711	
mm_143854.1	chr17	84180642	84180842	-	1	NA	NA	NA	7205	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.015000	0.572139	
mm_20667.1	chr2	132144988	132145188	-	1	NA	NA	NA	20	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.175000	0.840796	
mm_157468.1	chrX	47892350	47892550	-	1	NA	NA	NA	102	NM_053123	93761	Mm.229151	NM_053123	ENSMUSG00000031099	Smarca1	5730494M04Rik|Snf2l	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	protein-coding	0.065000	0.606965	
mm_13909.1	chr2	120500363	120500563	+	1	NA	NA	NA	23554	NM_001109761	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.000000	0.507463	
mm_41277.1	chr5	90246711	90246911	+	1	NA	NA	NA	-22815	NM_001163456	231430	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	0.015000	0.532338	
mm_138707.1	chr17	36042902	36043102	+	1	NA	NA	NA	41	NM_001034909	547347	Mm.484641	NM_001034909	ENSMUSG00000073407	Gm6034	EG547347|H2-gs14-2	predicted gene 6034	protein-coding	0.020000	0.522388	
mm_120135.1	chr14	60269300	60269500	+	1	NA	NA	NA	4195	NM_144843	219135	Mm.247007	NM_144843	ENSMUSG00000021987	Mtmr6	4022440C11Rik|AI428804|AU041072	myotubularin related protein 6	protein-coding	0.010000	0.472637	-90(TCTTAAAAAGTC,+,0.00),34(CCTTTTCTACAG,+,0.00)
mm_7164.1	chr1	92006764	92006964	-	1	NA	NA	NA	173477	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.005000	0.522388	30(CTCCTTATAAGG,-,0.00),32(CCTTATAAGGAT,+,0.00)
mm_158482.1	chrX	142196872	142197072	-	1	NA	NA	NA	-36	NM_001007576	245650	Mm.208511	NM_001007576	ENSMUSG00000042282	Gucy2f	A930002I06|GC-F|GC2	guanylate cyclase 2f	protein-coding	0.005000	0.427861	
mm_55632.1	chr6	72314685	72314885	-	1	NA	NA	NA	10175	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.005000	0.452736	
mm_38479.1	chr4	140700979	140701179	-	1	NA	NA	NA	-394	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.035000	0.447761	
mm_37597.1	chr4	126744030	126744230	-	1	NA	NA	NA	-7861	NM_198960	332937	Mm.331881	NM_198960	ENSMUSG00000042477	Tfap2e	AI505200|AP-2e|Tcfap2e	transcription factor AP-2, epsilon	protein-coding	0.005000	0.562189	
mm_122147.1	chr14	31206588	31206788	-	1	NA	NA	NA	138	NM_022656	64652	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1	nischarin	protein-coding	0.125000	0.771144	
mm_164219.1	chr15	84987749	84987949	-	1	NA	NA	NA	122	NM_001033273	223739	Mm.323925	NM_001033273	ENSMUSG00000036046	5031439G07Rik	AW554572|mKIAA0930	RIKEN cDNA 5031439G07 gene	protein-coding	0.195000	0.820896	
mm_9157.1	chr1	170959729	170959929	-	1	NA	NA	NA	16242	NM_001077189	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.000000	0.398010	0(AGCTATTTAAGC,-,0.00)
mm_138377.1	chr17	35016490	35016690	+	1	NA	NA	NA	11	NM_001347347	27762	Mm.56895	NM_138582	ENSMUSG00000007030	Vwa7	C6orf27|D17H6S56E-3|G7c|NG37	von Willebrand factor A domain containing 7	protein-coding	0.040000	0.651741	
mm_122562.1	chr14	49686418	49686618	-	1	NA	NA	NA	96849	NM_026142	67419	Mm.318710	NM_026142	ENSMUSG00000036242	3632451O06Rik	AU067705	RIKEN cDNA 3632451O06 gene	protein-coding	0.010000	0.373134	
mm_70586.1	chr8	13171144	13171344	+	1	NA	NA	NA	12083	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.005000	0.532338	
mm_44699.1	chr5	30545716	30545916	-	1	NA	NA	NA	20	NM_028483	73259	Mm.443299	NM_028483	ENSMUSG00000053194	Cib4	1700041E20Rik	calcium and integrin binding family member 4	protein-coding	0.000000	0.532338	
mm_107408.1	chr12	33434007	33434207	+	1	NA	NA	NA	4483	NM_172253	28071	Mm.196472	NM_172253	ENSMUSG00000020561	Twistnb	2410173G11|2810024J17Rik|D16Wsu83e	twist basic helix-loop-helix transcription factor 1 neighbor	protein-coding	0.015000	0.402985	
mm_113292.1	chr13	30336342	30336542	+	1	NA	NA	NA	86	NM_177322	11607	Mm.35062	NM_177322	ENSMUSG00000049115	Agtr1a	1810074K20Rik|AG2S|AI551199|AT1|AT1a|AT2R1|AT2R1A|Agtr-1a|Agtr1|Angtr-1a	angiotensin II receptor, type 1a	protein-coding	0.055000	0.636816	
mm_94831.1	chr11	23401500	23401700	+	1	NA	NA	NA	94705	NM_001190401	17847	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.025000	0.537313	
mm_11926.1	chr2	52110094	52110294	+	1	NA	NA	NA	37357	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.010000	0.407960	
mm_103706.1	chr11	79516559	79516759	-	1	NA	NA	NA	7103	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.015000	0.378109	
mm_25387.1	chr3	107215963	107216163	+	1	NA	NA	NA	5669	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.452736	
mm_130019.1	chr15	88734101	88734301	-	1	NA	NA	NA	18	NM_001033274	223770	Mm.254438	NM_001033274	ENSMUSG00000022387	Brd1	1110059H06Rik|AI316859|mKIAA4191	bromodomain containing 1	protein-coding	0.215000	0.825871	
mm_148597.1	chr19	5088552	5088752	+	1	NA	NA	NA	114	NM_026553	68090	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	0.095000	0.601990	
mm_58231.1	chr6	144984266	144984466	-	1	NA	NA	NA	64446	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.040000	0.562189	
mm_118608.1	chr14	20929103	20929303	+	1	NA	NA	NA	-230	NM_009502	22330	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0.090000	0.716418	-34(GCCCTTATAAGG,-,0.00),-32(CCTTATAAGGAG,+,0.00)
mm_72909.1	chr8	90954891	90955091	+	1	NA	NA	NA	22742	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.020000	0.427861	
mm_164748.1	chr17	74522986	74523186	+	1	NA	NA	NA	-5209	NM_007566	12211	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.010000	0.482587	
mm_93858.1	chr10	122569791	122569991	-	1	NA	NA	NA	0	NR_040616	319272	Mm.411763	NR_040616		A130077B15Rik	-	RIKEN cDNA A130077B15 gene	ncRNA	0.020000	0.432836	
mm_155786.1	chrX	96713367	96713567	+	1	NA	NA	NA	-1	NM_029536	76206	Mm.256065	NM_029536	ENSMUSG00000031210	Gpr165	6530406P05Rik	G protein-coupled receptor 165	protein-coding	0.035000	0.621891	-32(TTCTATAAAGGG,-,0.00)
mm_124743.1	chr15	6599365	6599565	+	1	NA	NA	NA	19618	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.010000	0.343284	44(AGCTTTAAAAGT,-,0.00),45(GCTTTAAAAGTG,+,0.00)
mm_79614.1	chr9	58629029	58629229	+	1	NA	NA	NA	46889	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.015000	0.412935	
mm_101788.1	chr11	46058021	46058221	-	1	NA	NA	NA	2137	NM_001291891	11492	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.025000	0.462687	
mm_105932.1	chr11	115133824	115134024	-	1	NA	NA	NA	68	NM_001347648	246746	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.030000	0.562189	-99(TGCTTTATATGC,-,0.00)
mm_56216.1	chr6	89363486	89363686	-	1	NA	NA	NA	-973	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.015000	0.532338	
mm_135144.1	chr16	35856578	35856778	-	1	NA	NA	NA	14704	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.005000	0.467662	81(CAGTTTAAAGGC,-,0.00)
mm_165095.1	chr19	53944162	53944362	-	1	NA	NA	NA	-44	NM_001168505	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.065000	0.611940	
mm_29882.1	chr3	131111950	131112150	-	1	NA	NA	NA	-741	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.070000	0.587065	
mm_9240.1	chr1	171328837	171329037	-	1	NA	NA	NA	-208	NM_001128609	21945	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	0.065000	0.537313	
mm_103743.1	chr11	80142006	80142206	-	1	NA	NA	NA	47	NM_183275	68550	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0.045000	0.577114	
mm_3040.1	chr1	134040177	134040377	+	1	NA	NA	NA	2762	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.020000	0.562189	
mm_3721.1	chr1	154201471	154201671	+	1	NA	NA	NA	384	NM_001204908	100503355	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	ENSMUSG00000066797|Gm10178|Gm203	zinc finger protein 648	protein-coding	0.020000	0.646766	
mm_124290.1	chr14	103054490	103054690	-	1	NA	NA	NA	7578	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.030000	0.557214	
mm_55361.1	chr6	56923839	56924039	-	1	NA	NA	NA	-7	NM_026004	107569	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0.120000	0.731343	
mm_87556.1	chr10	54118042	54118242	+	1	NA	NA	NA	42220	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.005000	0.457711	
mm_102084.1	chr11	52281680	52281880	-	1	NA	NA	NA	815	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.030000	0.487562	
mm_1644.1	chr1	74588265	74588465	+	1	NA	NA	NA	76	NM_025784	66821	Mm.358700	NM_025784	ENSMUSG00000026172	Bcs1l	9130022O19Rik	BCS1-like (yeast)	protein-coding	0.070000	0.636816	
mm_90835.1	chr10	8471719	8471919	-	1	NA	NA	NA	47006	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.000000	0.333333	
mm_68007.1	chr7	100938857	100939057	-	1	NA	NA	NA	-6796	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.060000	0.601990	
mm_110153.1	chr12	26454004	26454204	-	1	NA	NA	NA	2348	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.005000	0.482587	
mm_50366.1	chr6	48674716	48674916	+	1	NA	NA	NA	-1319	NM_174960	317758	Mm.116971	NM_174960	ENSMUSG00000051124	Gimap9	A630002K24|BB145400	GTPase, IMAP family member 9	protein-coding	0.000000	0.422886	
mm_8253.1	chr1	138842346	138842546	-	1	NA	NA	NA	-2	NM_001042577	16876	Mm.250732	NM_010714	ENSMUSG00000019230	Lhx9	3110009O07Rik|BB104635|LH2B	LIM homeobox protein 9	protein-coding	0.030000	0.487562	
mm_104997.1	chr11	100356005	100356205	-	1	NA	NA	NA	36	NM_177981	15114	Mm.281700	NM_010404	ENSMUSG00000006930	Hap1	HAP-1	huntingtin-associated protein 1	protein-coding	0.085000	0.666667	
mm_11064.1	chr2	27544762	27544962	+	1	NA	NA	NA	29715	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.005000	0.487562	
mm_51761.1	chr6	87843661	87843861	+	1	NA	NA	NA	-5002	NM_133934	57905	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	0.005000	0.393035	
mm_161253.1	chr13	105082266	105082466	+	1	NA	NA	NA	244	NM_025751	66763	Mm.109093	NM_025751	ENSMUSG00000021718	4933425L06Rik	-	RIKEN cDNA 4933425L06 gene	protein-coding	0.030000	0.507463	
mm_605.1	chr1	39903351	39903551	+	1	NA	NA	NA	2538	NM_008696	26921	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.020000	0.437811	
mm_87613.1	chr10	57785951	57786151	+	1	NA	NA	NA	1128	NM_021272	12140	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.010000	0.398010	
mm_164131.1	chr15	41833357	41833557	+	1	NA	NA	NA	2499	NM_001130164	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.005000	0.353234	
mm_136937.1	chr17	14249637	14249837	+	1	NA	NA	NA	-29769	NM_022315	64074	Mm.30162	NM_022315	ENSMUSG00000023886	Smoc2	1700056C05Rik|5430426J21Rik|Smoc2l	SPARC related modular calcium binding 2	protein-coding	0.005000	0.527363	
mm_108703.1	chr12	86952640	86952840	+	1	NA	NA	NA	5397	NM_001289432	217732	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.020000	0.472637	
mm_88363.1	chr10	75937086	75937286	+	1	NA	NA	NA	1613	NM_175329	103172	Mm.333849	NM_175329	ENSMUSG00000049422	Chchd10	1620401E04Rik|AI267078|Ndg2	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding	0.015000	0.512438	
mm_6646.1	chr1	79670067	79670267	-	1	NA	NA	NA	1805	NM_183027	252903	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0.010000	0.353234	
mm_126933.1	chr15	91706620	91706820	+	1	NA	NA	NA	33496	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.005000	0.412935	-92(GCTCATAAGGGC,+,0.00)
mm_40499.1	chr5	57718988	57719188	+	1	NA	NA	NA	1007	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.055000	0.661692	
mm_114948.1	chr13	96638865	96639065	+	1	NA	NA	NA	31971	NM_008255	15357	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0.005000	0.393035	
mm_59915.1	chr7	30417308	30417508	+	1	NA	NA	NA	2446	NM_011827	23900	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	0.020000	0.507463	-73(TTTTTTAAGGAG,+,0.00)
mm_141712.1	chr17	34024558	34024758	-	1	NA	NA	NA	22	NM_009066	19763	Mm.20343	NM_009066	ENSMUSG00000024325	Ring1	Ring1A	ring finger protein 1	protein-coding	0.145000	0.766169	
mm_50969.1	chr6	60586680	60586880	+	1	NA	NA	NA	-183073	NR_015565	208079	Mm.131226	NM_177329	ENSMUSG00000046764	A530053G22Rik	-	RIKEN cDNA A530053G22 gene	ncRNA	0.000000	0.437811	
mm_75108.1	chr8	34146894	34147094	-	1	NA	NA	NA	-255	NM_026609	68192	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	0.085000	0.641791	
mm_105464.1	chr11	105181244	105181444	-	1	NA	NA	NA	89	NR_027956	73431	Mm.351426	NM_028539		1700052K11Rik	AI840954	RIKEN cDNA 1700052K11 gene	ncRNA	0.125000	0.776119	
mm_39213.1	chr4	156059719	156059919	-	1	NA	NA	NA	-17	NR_132444	100415901	Mm.437006	NR_132444	ENSMUSG00000086549	Gm13648	OTTMUSG00000013217	predicted gene 13648	ncRNA	0.025000	0.572139	
mm_48013.1	chr5	136165743	136165943	-	1	NA	NA	NA	4813	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.015000	0.517413	
mm_156282.1	chrX	136837114	136837314	+	1	NA	NA	NA	14468	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.348259	
mm_137747.1	chr17	29393748	29393948	+	1	NA	NA	NA	32934	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.010000	0.537313	
mm_160147.1	chr7	40898974	40899174	+	1	NA	NA	NA	-204	NM_021387	58188	Mm.150675	NM_021387	ENSMUSG00000039257	Vstm2b	2900093B09Rik|AB030198	V-set and transmembrane domain containing 2B	protein-coding	0.075000	0.646766	
mm_105037.1	chr11	100583021	100583221	-	1	NA	NA	NA	7230	NM_001146318	12799	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.000000	0.412935	
mm_23922.1	chr3	83127422	83127622	+	1	NA	NA	NA	71984	NM_016784	53317	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	0.075000	0.641791	
mm_55323.1	chr6	55678459	55678659	-	1	NA	NA	NA	2704	NM_009717	11922	Mm.5106	NM_009717	ENSMUSG00000037984	Neurod6	Atoh2|Math-2|Math2|Nex|Nex1m|bHLHa2	neurogenic differentiation 6	protein-coding	0.010000	0.358209	
mm_24847.1	chr3	95674374	95674574	+	1	NA	NA	NA	13443	NM_144899	229595	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.010000	0.606965	
mm_48126.1	chr5	137149569	137149769	-	1	NA	NA	NA	-33462	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.487562	
mm_51178.1	chr6	70726673	70726873	+	1	NA	NA	NA	65402	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.020000	0.522388	
mm_98355.1	chr11	93885022	93885222	+	1	NA	NA	NA	644	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.110000	0.711443	
mm_30157.1	chr3	142881880	142882080	-	1	NA	NA	NA	24	NM_178654	109333	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	0.140000	0.756219	
mm_13209.1	chr2	94406641	94406841	+	1	NA	NA	NA	34	NR_027831	66457	Mm.402557	NR_027831		2810002D19Rik	-	RIKEN cDNA 2810002D19 gene	ncRNA	0.100000	0.686567	
mm_80346.1	chr9	75173899	75174099	+	1	NA	NA	NA	-58015	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.015000	0.378109	
mm_129572.1	chr15	79687735	79687935	-	1	NA	NA	NA	37	NM_028792	74158	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	0.160000	0.771144	
mm_138437.1	chr17	35110674	35110874	+	1	NA	NA	NA	2474	NM_148947	114652	Mm.222643	NM_148947	ENSMUSG00000034482	Ly6g5c	G5c|NG33	lymphocyte antigen 6 complex, locus G5C	protein-coding	0.015000	0.597015	
mm_5871.1	chr1	53785054	53785254	-	1	NA	NA	NA	61	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.095000	0.641791	
mm_123156.1	chr14	57131958	57132158	-	1	NA	NA	NA	1553	NM_001271663	14623	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	0.005000	0.547264	
mm_28839.1	chr3	96580122	96580322	-	1	NA	NA	NA	-13421	NR_040409	100038464	Mm.475126	NR_040409	ENSMUSG00000074398	Gm15441	ENSMUSG00000074398|OTTMUSG00000021867	predicted gene 15441	ncRNA	0.020000	0.502488	
mm_106961.1	chr12	8921948	8922148	+	1	NA	NA	NA	741	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.115000	0.671642	
mm_139553.1	chr17	56861455	56861655	+	1	NA	NA	NA	12892	NM_001039114	328845	Mm.179421	NM_001039114	ENSMUSG00000024207	Acsbg2	Bgr	acyl-CoA synthetase bubblegum family member 2	protein-coding	0.010000	0.592040	
mm_68989.1	chr7	126594925	126595125	-	1	NA	NA	NA	-115	NM_145636	246779	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	0.010000	0.542289	
mm_20684.1	chr2	132578089	132578289	-	1	NA	NA	NA	59	NM_001291050	74182	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	0.115000	0.721393	
mm_74817.1	chr8	22803788	22803988	-	1	NA	NA	NA	1766	NM_029505	64933	Mm.390023	NM_029505	ENSMUSG00000031539	Ap3m2	5830445E16Rik|AP-3B	adaptor-related protein complex 3, mu 2 subunit	protein-coding	0.030000	0.522388	
mm_87701.1	chr10	59879491	59879691	+	1	NA	NA	NA	0	NM_019965	56709	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.110000	0.681592	
mm_16631.1	chr2	5714341	5714541	-	1	NA	NA	NA	321	NM_001290374	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.070000	0.646766	
mm_45900.1	chr5	88676061	88676261	-	1	NA	NA	NA	10	NM_178700	231413	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.140000	0.781095	
mm_159862.1	chr5	140891034	140891234	-	1	NA	NA	NA	-60703	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.025000	0.572139	
mm_46241.1	chr5	99223546	99223746	-	1	NA	NA	NA	29281	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.010000	0.452736	
mm_82440.1	chr9	15279804	15280004	-	1	NA	NA	NA	-37	NM_144933	234959	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0.100000	0.646766	
mm_55336.1	chr6	56362176	56362376	-	1	NA	NA	NA	116	NM_001159952	18575	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0.030000	0.621891	
mm_53757.1	chr6	145615918	145616118	+	1	NA	NA	NA	55	NM_009449	22147	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0.070000	0.621891	
mm_119712.1	chr14	53875843	53876043	+	1	NA	NA	NA	377986	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.532338	
mm_37338.1	chr4	119657504	119657704	-	1	NA	NA	NA	1341	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.005000	0.552239	
mm_73603.1	chr8	109998914	109999114	+	1	NA	NA	NA	8578	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.025000	0.522388	
mm_142461.1	chr17	45596591	45596791	-	1	NA	NA	NA	-789	NM_001199114	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.020000	0.532338	
mm_128567.1	chr15	56694491	56694691	-	1	NA	NA	NA	-45	NM_008216	15117	Mm.5148	NM_008216	ENSMUSG00000022367	Has2	-	hyaluronan synthase 2	protein-coding	0.030000	0.601990	19(TCCTATTAAAAC,-,0.00)
mm_125631.1	chr15	61989946	61990146	+	1	NA	NA	NA	4705	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.010000	0.378109	38(TAGTATAAAAGA,-,0.00)
mm_144021.1	chr17	90035753	90035953	-	1	NA	NA	NA	52515	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.000000	0.303483	
mm_38972.1	chr4	150907126	150907326	-	1	NA	NA	NA	2695	NM_020569	57320	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.015000	0.492537	
mm_114465.1	chr13	67744104	67744304	+	1	NA	NA	NA	10930	NM_001001130	22746	Mm.288396	NM_001001130	ENSMUSG00000058331	Zfp85	KRAB19|Rslcan2|Zfp71|Zfp85-rs1	zinc finger protein 85	protein-coding	0.035000	0.552239	
mm_135996.1	chr16	75292253	75292453	-	1	NA	NA	NA	293708	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.010000	0.457711	-5(GCTTTTAGGCCA,+,0.00)
mm_138001.1	chr17	33810422	33810622	+	1	NA	NA	NA	-1	NM_030697	80880	Mm.196330	NM_030697	ENSMUSG00000042099	Kank3	0610013D04Rik|Ankrd47|D17Ertd288e|NG28	KN motif and ankyrin repeat domains 3	protein-coding	0.075000	0.592040	
mm_139877.1	chr17	70747996	70748196	+	1	NA	NA	NA	98681	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.025000	0.462687	
mm_49563.1	chr6	30610880	30611080	+	1	NA	NA	NA	-30	NM_144537	74649	Mm.159276	NM_144537	ENSMUSG00000029788	Cpa5	4930430M09Rik	carboxypeptidase A5	protein-coding	0.030000	0.457711	
mm_90054.1	chr10	116177305	116177505	+	1	NA	NA	NA	54	NM_001161840	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	0.030000	0.567164	
mm_30191.1	chr3	144692318	144692518	-	1	NA	NA	NA	27917	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.005000	0.358209	
mm_117415.1	chr13	74292213	74292413	-	1	NA	NA	NA	18	NM_009644	11624	Mm.290446	NM_009644	ENSMUSG00000021575	Ahrr	mKIAA1234	aryl-hydrocarbon receptor repressor	protein-coding	0.095000	0.686567	
mm_143711.1	chr17	80726513	80726713	-	1	NA	NA	NA	1412	NM_001290345	225028	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.015000	0.412935	
mm_12723.1	chr2	78357527	78357727	+	1	NA	NA	NA	120080	NM_177843	329436	Mm.235448	NM_177843		Gm14461	A830093M07|OTTMUSG00000016703	predicted gene 14461	protein-coding	0.005000	0.368159	
mm_102969.1	chr11	69666066	69666266	-	1	NA	NA	NA	4	NM_001291058	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.005000	0.467662	
mm_8146.1	chr1	136414869	136415069	-	1	NA	NA	NA	-302	NM_026500	67997	Mm.385462	NM_026500	ENSMUSG00000026404	Ddx59	1210002B07Rik|4833411G06Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	protein-coding	0.030000	0.502488	
mm_169756.1	chr15	90882428	90882628	+	1	NA	NA	NA	15948	NR_033583	20738	Mm.431547	NR_033583		Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.080000	0.572139	
mm_160139.1	chr7	30914244	30914444	-	1	NA	NA	NA	-23	NM_001346089	17136	Mm.241355	NM_010758	ENSMUSG00000036634	Mag	Gma|siglec-4a	myelin-associated glycoprotein	protein-coding	0.015000	0.562189	
mm_167489.1	chr9	6168586	6168786	+	1	NA	NA	NA	74	NM_027924	71785	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0.065000	0.537313	
mm_104087.1	chr11	86624192	86624392	-	1	NA	NA	NA	-31779	NR_106195	102465902		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	0.010000	0.412935	
mm_78261.1	chr9	21927564	21927764	+	1	NA	NA	NA	-129	NM_001253870	235043	Mm.253329	NM_178577	ENSMUSG00000040883	Tmem205	-	transmembrane protein 205	protein-coding	0.045000	0.577114	
mm_58360.1	chr6	148212285	148212485	-	1	NA	NA	NA	-11	NM_001286560	67456	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	0.065000	0.537313	
mm_3912.1	chr1	161969119	161969319	+	1	NA	NA	NA	31	NM_026078	67292	Mm.45106	NM_026078	ENSMUSG00000026698	Pigc	3110030E07Rik|AW212108	phosphatidylinositol glycan anchor biosynthesis, class C	protein-coding	0.105000	0.661692	39(CCCCCTAAAGAG,-,0.00)
mm_61009.1	chr7	49364760	49364960	+	1	NA	NA	NA	118671	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.025000	0.462687	
mm_91459.1	chr10	34096282	34096482	-	1	NA	NA	NA	137	NM_178908	103511	Mm.66334	NM_178908	ENSMUSG00000049872	Fam26e	BB146404	family with sequence similarity 26, member E	protein-coding	0.035000	0.487562	
mm_53018.1	chr6	123653391	123653591	+	1	NA	NA	NA	-2856	NM_001104637	546913	Mm.469875	NM_001104637	ENSMUSG00000095486	Vmn2r22	EG546913	vomeronasal 2, receptor 22	protein-coding	0.000000	0.532338	
mm_89881.1	chr10	108332619	108332819	+	1	NA	NA	NA	530	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.150000	0.776119	
mm_72493.1	chr8	83715209	83715409	+	1	NA	NA	NA	132	NM_197982	68278	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	0.125000	0.706468	
mm_6697.1	chr1	80758390	80758590	-	1	NA	NA	NA	63	NM_175291	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.115000	0.726368	
mm_52719.1	chr6	119902611	119902811	+	1	NA	NA	NA	13	NM_001166381	19365	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.080000	0.606965	
mm_98224.1	chr11	88051063	88051263	+	1	NA	NA	NA	3790	NM_173374	110809	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	0.025000	0.388060	
mm_33957.1	chr4	137468699	137468899	+	1	NA	NA	NA	-4	NM_008305	15530	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	0.105000	0.751244	
mm_52625.1	chr6	117174069	117174269	+	1	NA	NA	NA	5634	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.030000	0.542289	
mm_76735.1	chr8	95113241	95113441	-	1	NA	NA	NA	1	NM_001145832	16582	Mm.378951	NM_010631	ENSMUSG00000031788	Kifc3	AI325457|BB123200	kinesin family member C3	protein-coding	0.005000	0.601990	
mm_63690.1	chr7	130576765	130576965	+	1	NA	NA	NA	-619	NM_001004468	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.020000	0.452736	
mm_115554.1	chr13	8979875	8980075	-	1	NA	NA	NA	16037	NM_027000	69237	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0.005000	0.427861	
mm_78367.1	chr9	27030078	27030278	+	1	NA	NA	NA	3	NM_178113	78658	Mm.251777	NM_178113	ENSMUSG00000035024	Ncapd3	2810487N22Rik|4632407J06Rik|AI195468|AU018739|B130055D15Rik|mKIAA0056	non-SMC condensin II complex, subunit D3	protein-coding	0.065000	0.631841	
mm_163082.1	chr11	69091127	69091327	+	1	NA	NA	NA	2699	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.005000	0.393035	
mm_167263.1	chr8	27175568	27175768	-	1	NA	NA	NA	-1022	NM_001080813	75767	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.020000	0.532338	
mm_134051.1	chr16	5371159	5371359	-	1	NA	NA	NA	-115303	NM_027446	70511	Mm.45780	NM_027446	ENSMUSG00000022544	Eef2kmt	5730409G15Rik|Fam86|Fam86a|eEF2-KMT	eukaryotic elongation factor 2 lysine methyltransferase	protein-coding	0.005000	0.492537	
mm_162993.1	chr11	28853666	28853866	+	1	NA	NA	NA	561	NM_146015	216616	Mm.44176	NM_146015	ENSMUSG00000020467	Efemp1	-	epidermal growth factor-containing fibulin-like extracellular matrix protein 1	protein-coding	0.010000	0.527363	
mm_39280.1	chr5	3927773	3927973	+	1	NA	NA	NA	-313	NM_194462	100986	Mm.46044	NM_194462	ENSMUSG00000040407	Akap9	5730481H23Rik|AKAP-9|AKAP450|AW545847|C79026|G1-448-15|PRKA9|mKIAA0803|mei2-5|repro12	A kinase (PRKA) anchor protein (yotiao) 9	protein-coding	0.025000	0.512438	
mm_56437.1	chr6	97431328	97431528	-	1	NA	NA	NA	27858	NM_001346639	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.010000	0.532338	
mm_34085.1	chr4	138831763	138831963	+	1	NA	NA	NA	6	NR_002926	18780	Mm.4675	NM_011108	ENSMUSG00000058908	Pla2g2a	EF|Mom1|Pla2|sPLA2|sPla2-IIA	phospholipase A2, group IIA (platelets, synovial fluid)	protein-coding	0.005000	0.487562	-37(AGCTATTTAAGG,-,0.00),-35(CTATTTAAGGGC,+,0.00)
mm_147019.1	chr18	34605329	34605529	-	1	NA	NA	NA	-7961	NM_177773	271508	Mm.417609	NM_177773	ENSMUSG00000049357	4933408B17Rik	-	RIKEN cDNA 4933408B17 gene	protein-coding	0.005000	0.467662	
mm_91938.1	chr10	60744615	60744815	-	1	NA	NA	NA	8067	NM_023596	71279	Mm.284462	NM_023596	ENSMUSG00000020100	Slc29a3	4933435C21Rik|AW987637|Ent3	solute carrier family 29 (nucleoside transporters), member 3	protein-coding	0.015000	0.487562	
mm_28447.1	chr3	90511943	90512143	-	1	NA	NA	NA	2287	NM_011309	20193	Mm.24662	NM_011309	ENSMUSG00000044080	S100a1	AI266795|S100|S100a	S100 calcium binding protein A1	protein-coding	0.005000	0.512438	
mm_35413.1	chr4	34834764	34834964	-	1	NA	NA	NA	48084	NM_013889	30046	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	0.000000	0.343284	
mm_155625.1	chrX	83855269	83855469	+	1	NA	NA	NA	-367445	NM_021898	100502723	Mm.383210	NM_021898	ENSMUSG00000035522	Tsga8	Halap-X|Halapx	testis specific gene A8	protein-coding	0.010000	0.388060	
mm_76808.1	chr8	104395780	104395980	-	1	NA	NA	NA	-73	NM_153582	97487	Mm.29658	NM_153582	ENSMUSG00000096188	Cmtm4	Cklfsf4|D19397|ENSMUSG00000051554|Gm9853	CKLF-like MARVEL transmembrane domain containing 4	protein-coding	0.135000	0.815920	
mm_128888.1	chr15	73161938	73162138	-	1	NA	NA	NA	22909	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.005000	0.452736	-40(GTCCTTTAAAGG,-,0.00),-39(TCCTTTAAAGGA,+,0.00),-39(TCCTTTAAAGGA,-,0.00),-38(CCTTTAAAGGAC,+,0.00)
mm_100919.1	chr11	6292061	6292261	-	1	NA	NA	NA	-397	NM_001252288	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.100000	0.661692	
mm_45488.1	chr5	71502558	71502758	-	1	NA	NA	NA	45547	NM_030052	78174	Mm.60690	NM_030052	ENSMUSG00000049387	Cox7b2	4930503B16Rik	cytochrome c oxidase subunit VIIb2	protein-coding	0.005000	0.343284	-68(TCCTTTTTAAGG,-,0.00),-66(CTTTTTAAGGGG,+,0.00)
mm_7531.1	chr1	124307085	124307285	-	1	NA	NA	NA	-261626	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.338308	78(TTGTATATAAGG,-,0.00)
mm_34905.1	chr4	155670391	155670591	+	1	NA	NA	NA	-1237	NM_001256107	76580	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	0.015000	0.537313	
mm_7872.1	chr1	132741678	132741878	-	1	NA	NA	NA	19	NM_182716	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	0.135000	0.761194	
mm_51899.1	chr6	90619274	90619474	+	1	NA	NA	NA	128	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.015000	0.587065	
mm_118566.1	chr14	18271146	18271346	+	1	NA	NA	NA	110	NM_023526	69721	Mm.25648	NM_023526	ENSMUSG00000021772	Nkiras1	2400004O09Rik|KBRAS1|kappaB-Ras1	NFKB inhibitor interacting Ras-like protein 1	protein-coding	0.075000	0.651741	
mm_94862.1	chr11	24077846	24078046	+	1	NA	NA	NA	-110	NM_016707	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.050000	0.666667	
mm_123157.1	chr14	57131980	57132180	-	1	NA	NA	NA	1531	NM_001271663	14623	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	0.005000	0.537313	
mm_61602.1	chr7	80027073	80027273	+	1	NA	NA	NA	945	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.125000	0.766169	
mm_1082.1	chr1	59544046	59544246	+	1	NA	NA	NA	27882	NM_001013771	381260	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0.020000	0.532338	
mm_154321.1	chrM	2186	2386	+	1	NA	NA	NA	NA	NA									0.025000	0.338308	
mm_60619.1	chr7	44598282	44598482	+	1	NA	NA	NA	7496	NM_001290682	16504	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.025000	0.601990	
mm_8001.1	chr1	134540621	134540821	-	1	NA	NA	NA	8961	NM_001145300	71001	Mm.158529	NM_183292	ENSMUSG00000046367	Mgat4e	4931440L10Rik	MGAT4 family, member E	protein-coding	0.010000	0.532338	
mm_156601.1	chrX	152781912	152782112	+	1	NA	NA	NA	91	NM_010951	18241	Mm.5157	NM_010951	ENSMUSG00000025333	Gpr143	Oa1	G protein-coupled receptor 143	protein-coding	0.045000	0.601990	
mm_103243.1	chr11	70700038	70700238	-	1	NA	NA	NA	17	NM_001252482	103844	Mm.101581	NM_213729	ENSMUSG00000057054	Inca1	AI842396	inhibitor of CDK, cyclin A1 interacting protein 1	protein-coding	0.085000	0.681592	
mm_121073.1	chr14	98167793	98167993	+	1	NA	NA	NA	1872	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.035000	0.577114	
mm_88328.1	chr10	75568561	75568761	+	1	NA	NA	NA	-1	NM_001305992	14598	Mm.4559	NM_008116	ENSMUSG00000006345	Ggt1	CD224|GGT|GGT 1|GGT-1|Ggtp|dwg	gamma-glutamyltransferase 1	protein-coding	0.030000	0.601990	-87(TACCTTTAAAGC,-,0.00),-86(ACCTTTAAAGCC,+,0.00),-85(CCTTTAAAGCCT,+,0.00)
mm_53768.1	chr6	145863765	145863965	+	1	NA	NA	NA	1555	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.070000	0.572139	
mm_156306.1	chrX	136837923	136838123	+	1	NA	NA	NA	15277	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.000000	0.343284	-28(CAATATATAAGG,-,0.00)
mm_109119.1	chr12	105685257	105685457	+	1	NA	NA	NA	5	NM_178613	66787	Mm.248019	NM_178613	ENSMUSG00000044715	Gskip	4933433P14Rik	GSK3B interacting protein	protein-coding	0.105000	0.656716	
mm_81880.1	chr9	119341256	119341456	+	1	NA	NA	NA	62	NM_130864	113868	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	0.060000	0.606965	-33(CCCTCTAAAGAC,-,0.00)
mm_55365.1	chr6	57535387	57535587	-	1	NA	NA	NA	-61	NM_175523	243382	Mm.396893	NM_175523	ENSMUSG00000037826	Ppm1k	2900063A19Rik|A930026L03Rik|PP2Cm	protein phosphatase 1K (PP2C domain containing)	protein-coding	0.030000	0.462687	
mm_135828.1	chr16	58515735	58515935	-	1	NA	NA	NA	7477	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.000000	0.303483	67(GCTTTTCTAGGC,+,0.00)
mm_620.1	chr1	40085113	40085313	+	1	NA	NA	NA	445	NM_010555	16178	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.010000	0.507463	
mm_83193.1	chr9	41014166	41014366	-	1	NA	NA	NA	-9638	NM_019465	54698	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	0.015000	0.497512	
mm_129765.1	chr15	82641944	82642144	-	1	NA	NA	NA	1	NR_003552	68444	Mm.443212	NR_003552		Cyp2d13	1300007K12Rik	cytochrome P450, family 2, subfamily d, polypeptide 13	pseudo	0.000000	0.517413	-34(TCCTTTATAAGG,-,0.00),-32(CTTTATAAGGTG,+,0.00)
mm_116637.1	chr13	49014503	49014703	-	1	NA	NA	NA	46491	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.000000	0.547264	
mm_94531.1	chr11	9118446	9118646	+	1	NA	NA	NA	39	NM_001159402	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.070000	0.651741	46(TCCTTTTAAAAG,-,0.00),47(CCTTTTAAAAGC,+,0.00),47(CCTTTTAAAAGC,-,0.00),48(CTTTTAAAAGCT,+,0.00)
mm_59898.1	chr7	30308172	30308372	+	1	NA	NA	NA	-481	NM_198027	233065	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	0.015000	0.557214	
mm_165104.1	chr19	55893303	55893503	+	1	NA	NA	NA	-1918	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.015000	0.393035	
mm_22621.1	chr3	14644827	14645027	+	1	NA	NA	NA	3200	NM_024495	71934	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	0.000000	0.457711	
mm_160377.1	chr8	41015335	41015535	-	1	NA	NA	NA	-2033	NR_015457	78849	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	0.015000	0.462687	
mm_71648.1	chr8	59419286	59419486	+	1	NA	NA	NA	-406263	NR_126087	75017	Mm.60775	NR_126087	ENSMUSG00000110406	4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA	0.005000	0.547264	-35(CACTATAAAAGG,-,0.00)
mm_13023.1	chr2	91035599	91035799	+	1	NA	NA	NA	72	NM_009023	19400	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	0.030000	0.621891	
mm_146921.1	chr18	31610431	31610631	-	1	NA	NA	NA	-629	NM_026165	67453	Mm.23896	NM_026165	ENSMUSG00000024259	Slc25a46	1200007B05Rik|AI325987	solute carrier family 25, member 46	protein-coding	0.020000	0.437811	-75(CCCTTTAAACGA,+,0.00)
mm_113024.1	chr13	22043099	22043299	+	1	NA	NA	NA	-31	NM_178198	319183	Mm.371766	NM_178198	ENSMUSG00000069300	Hist1h2bj	-	histone cluster 1, H2bj	protein-coding	0.040000	0.497512	-34(CTCTTTAAAAGG,-,0.00),-33(TCTTTAAAAGGG,+,0.00)
mm_73265.1	chr8	104346874	104347074	+	1	NA	NA	NA	6380	NM_024217	68119	Mm.390108	NM_024217	ENSMUSG00000031875	Cmtm3	9430096L06Rik|AI413895|BNAS2|Cklfsf3	CKLF-like MARVEL transmembrane domain containing 3	protein-coding	0.030000	0.547264	
mm_16319.1	chr2	174304458	174304658	+	1	NA	NA	NA	6699	NM_001310085	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.000000	0.368159	
mm_115393.1	chr13	113660739	113660939	+	1	NA	NA	NA	2837	NM_019960	56534	Mm.41410	NM_019960	ENSMUSG00000051456	Hspb3	2310035K17Rik|AI844863|Hsbp3|spb3	heat shock protein 3	protein-coding	0.015000	0.452736	73(TAGTTTAAATGG,-,0.00),75(GTTTAAATGGGC,+,0.00),84(GGCTATATGAGC,-,0.00)
mm_59045.1	chr7	19345577	19345777	+	1	NA	NA	NA	606	NM_007948	13870	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.040000	0.592040	
mm_143327.1	chr17	66419599	66419799	-	1	NA	NA	NA	30051	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.005000	0.402985	-63(CTCTTTAAAAAA,-,0.00)
mm_61048.1	chr7	49895507	49895707	+	1	NA	NA	NA	-14692	NM_001146013	104245	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	0.010000	0.537313	
mm_165341.1	chr2	118008223	118008423	+	1	NA	NA	NA	102879	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA	0.000000	0.472637	-37(CCATATATGGCT,+,0.00)
mm_97925.1	chr11	83639635	83639835	+	1	NA	NA	NA	9643	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.005000	0.492537	
mm_146859.1	chr18	24439004	24439204	-	1	NA	NA	NA	-9934	NR_029573	387182		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0.015000	0.378109	
mm_58545.1	chr7	4526499	4526699	+	1	NA	NA	NA	-4156	NM_009406	21954	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0.035000	0.522388	
mm_41696.1	chr5	100845619	100845819	+	1	NA	NA	NA	-510	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Agpat9	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|GPAT-3|Gpat3|mGPAT3	1-acylglycerol-3-phosphate O-acyltransferase 9	protein-coding	0.040000	0.532338	-41(GCCCTTTTAAAG,-,0.00),-40(CCCTTTTAAAGC,-,0.00),-39(CCTTTTAAAGCA,+,0.00),-25(GTCTATAAAGGA,-,0.00)
mm_136294.1	chr16	91464764	91464964	-	1	NA	NA	NA	-240	NR_077219	100503120	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.045000	0.542289	
mm_159074.1	chr2	25579853	25580053	-	1	NA	NA	NA	146	NM_001005424	381353	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	-	predicted gene 996	protein-coding	0.060000	0.646766	
mm_59612.1	chr7	28142468	28142668	+	1	NA	NA	NA	13102	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.020000	0.437811	
mm_98642.1	chr11	96194273	96194473	+	1	NA	NA	NA	12	NM_008267	15408	Mm.57221	NM_008267	ENSMUSG00000049604	Hoxb13	-	homeobox B13	protein-coding	0.065000	0.621891	
mm_33002.1	chr4	120532138	120532338	+	1	NA	NA	NA	7	NM_177570	194219	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	0.020000	0.572139	
mm_159503.1	chr4	43854316	43854516	+	1	NA	NA	NA	124	NM_019473	29845	Mm.88841	NM_019473	ENSMUSG00000071000	Olfr155	GA_x5J8B7W5BNN-979337-980296|MOR262-14|OR37A|Olfr37a|mOR37a	olfactory receptor 155	protein-coding	0.035000	0.582090	
mm_67155.1	chr7	73540804	73541004	-	1	NA	NA	NA	842	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.015000	0.398010	
mm_20515.1	chr2	130662079	130662279	-	1	NA	NA	NA	2466	NM_029832	77006	Mm.440063	NM_029832	ENSMUSG00000068290	Ddrgk1	1110001I20Rik|2600009E05Rik|AI326138|Ufbp1	DDRGK domain containing 1	protein-coding	0.020000	0.502488	
mm_106289.1	chr11	118210008	118210208	-	1	NA	NA	NA	2634	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.010000	0.393035	18(AGCTATAAAAGG,-,0.00),38(GGGTATATAAAA,-,0.00)
mm_98472.1	chr11	94950262	94950462	+	1	NA	NA	NA	14138	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.040000	0.611940	
mm_110718.1	chr12	69582918	69583118	-	1	NA	NA	NA	10	NM_001033236	207965	Mm.102487	NM_001033236	ENSMUSG00000049882	Vcpkmt	Gm71|Mettl21d|Mettl221d|VCP-KMT	valosin containing protein lysine (K) methyltransferase	protein-coding	0.110000	0.711443	
mm_11287.1	chr2	30066690	30066890	+	1	NA	NA	NA	316	NM_001204875	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.135000	0.731343	
mm_58404.1	chr7	3219150	3219350	+	1	NA	NA	NA	9	NR_106140	102467000		NR_106140	ENSMUSG00000104747	Mir292b	mmu-mir-292b	microRNA 292b	ncRNA	0.020000	0.457711	
mm_14408.1	chr2	130275408	130275608	+	1	NA	NA	NA	-7	NR_028547	100217452		NR_028547	ENSMUSG00000080610	Snord110	MBII-55	small nucleolar RNA, C/D box 110	snoRNA	0.015000	0.407960	
mm_109988.1	chr12	14151955	14152155	-	1	NA	NA	NA	-17	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	0.090000	0.646766	
mm_25498.1	chr3	109380574	109380774	+	1	NA	NA	NA	39991	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.005000	0.427861	
mm_96725.1	chr11	69684229	69684429	+	1	NA	NA	NA	1225	NM_001159505	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.015000	0.547264	
mm_54852.1	chr6	42591831	42592031	-	1	NA	NA	NA	5441	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.010000	0.482587	
mm_94408.1	chr11	5797896	5798096	+	1	NA	NA	NA	5800	NM_018870	56012	Mm.219627	NM_018870	ENSMUSG00000020475	Pgam2	-	phosphoglycerate mutase 2	protein-coding	0.010000	0.532338	
mm_79417.1	chr9	55213806	55214006	+	1	NA	NA	NA	4971	NM_028049	71999	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	0.020000	0.512438	78(GGCCATAAAAGA,-,0.00)
mm_168410.1	chr11	3146398	3146598	-	1	NA	NA	NA	22477	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.005000	0.442786	
mm_42532.1	chr5	115858955	115859155	+	1	NA	NA	NA	13399	NM_007708	12704	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0.020000	0.412935	
mm_120670.1	chr14	70554134	70554334	+	1	NA	NA	NA	178	NM_021877	15460	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	0.060000	0.756219	
mm_16400.1	chr2	179976800	179977000	+	1	NA	NA	NA	47	NR_033782	66730	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	0.120000	0.746269	-54(GGCTCTTAAAAG,-,0.00),-53(GCTCTTAAAAGA,-,0.00),-52(CTCTTAAAAGAC,+,0.00)
mm_151997.1	chr19	5894028	5894228	-	1	NA	NA	NA	-21	NM_198634	332359	Mm.329642	NM_198634	ENSMUSG00000044390	Tigd3	-	tigger transposable element derived 3	protein-coding	0.110000	0.671642	
mm_43567.1	chr5	137636648	137636848	+	1	NA	NA	NA	-4725	NM_001081962	751865	Mm.200763	NM_001081962	ENSMUSG00000079165	Sap25	-	sin3 associated polypeptide	protein-coding	0.040000	0.587065	
mm_2181.1	chr1	88559812	88560012	+	1	NA	NA	NA	8395	NR_037971	100503197	Mm.99352	NR_037971	ENSMUSG00000100798	Gm19589	-	predicted gene, 19589	ncRNA	0.000000	0.402985	
mm_124189.1	chr14	97515359	97515559	-	1	NA	NA	NA	654306	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.010000	0.547264	
mm_41377.1	chr5	90719122	90719322	+	1	NA	NA	NA	-40076	NM_009141	20311	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0.005000	0.462687	20(TCCCTGAAAAGG,-,0.00)
mm_79676.1	chr9	59750754	59750954	+	1	NA	NA	NA	-205	NM_001172070	71599	Mm.279070	NM_027838	ENSMUSG00000051705	Senp8	9130010J17Rik|AU020827|Den1|Nedp1|Prsc2	SUMO/sentrin specific peptidase 8	protein-coding	0.135000	0.766169	
mm_160702.1	chr10	50895649	50895849	+	1	NA	NA	NA	98	NM_011376	20464	Mm.4774	NM_011376	ENSMUSG00000019913	Sim1	bHLHe14|mSIM1	single-minded homolog 1 (Drosophila)	protein-coding	0.035000	0.417910	-59(TCTTTTATACTT,+,0.00)
mm_159133.1	chr2	75661368	75661568	+	1	NA	NA	NA	2178	NR_033513	627828	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	0.000000	0.373134	
mm_9537.1	chr1	173874329	173874529	-	1	NA	NA	NA	5758	NM_001170853	100040462	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	0.015000	0.412935	
mm_139190.1	chr17	47598586	47598786	+	1	NA	NA	NA	5219	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.015000	0.587065	
mm_115902.1	chr13	23369087	23369287	-	1	NA	NA	NA	21	NM_001286156	218100	Mm.286454	NM_172586	ENSMUSG00000046351	Zfp322a	Znf322|Znf322a	zinc finger protein 322A	protein-coding	0.075000	0.636816	
mm_120476.1	chr14	65975488	65975688	+	1	NA	NA	NA	7105	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.025000	0.557214	
mm_162136.1	chrX	73411510	73411710	+	1	NA	NA	NA	50	NM_001310531	22754	Mm.5060	NM_009566	ENSMUSG00000031374	Zfp92	-	zinc finger protein 92	protein-coding	0.020000	0.557214	
mm_29936.1	chr3	131613680	131613880	-	1	NA	NA	NA	47748	NM_001289477	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.020000	0.507463	
mm_136990.1	chr17	17374470	17374670	+	1	NA	NA	NA	238	NM_025934	67045	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2 (yeast)	protein-coding	0.080000	0.567164	-72(CCTTAAATACAG,+,0.00)
mm_56349.1	chr6	92988107	92988307	-	1	NA	NA	NA	47625	NR_015530	330385	Mm.483472	NR_015530	ENSMUSG00000097462	9530026P05Rik	B430306B02	RIKEN cDNA 9530026P05 gene	ncRNA	0.015000	0.477612	-93(CCTTTAAAACAA,+,0.00)
mm_22143.1	chr2	172043039	172043239	-	1	NA	NA	NA	327	NM_175631	228942	Mm.40555	NM_175631	ENSMUSG00000067578	Cbln4	AI848962	cerebellin 4 precursor protein	protein-coding	0.110000	0.671642	52(TCCTATAAATAG,-,0.00)
mm_43840.1	chr5	142972939	142973139	+	1	NA	NA	NA	12684	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.030000	0.567164	
mm_12201.1	chr2	65930004	65930204	+	1	NA	NA	NA	-1761	NM_001290665	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding	0.015000	0.487562	
mm_49507.1	chr6	29853891	29854091	+	1	NA	NA	NA	250	NM_001347084	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.010000	0.507463	
mm_16921.1	chr2	13579990	13580190	-	1	NA	NA	NA	5779	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.030000	0.492537	
mm_135921.1	chr16	69800288	69800488	-	1	NA	NA	NA	-7	NR_130991	78110	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	-	RIKEN cDNA 4930428D20 gene	ncRNA	0.005000	0.373134	
mm_29848.1	chr3	129946212	129946412	-	1	NA	NA	NA	23894	NM_025779	66815	Mm.31056	NM_025779	ENSMUSG00000027994	Ccdc109b	9030408N13Rik|MCUb	coiled-coil domain containing 109B	protein-coding	0.005000	0.452736	
mm_38197.1	chr4	135433707	135433907	-	1	NA	NA	NA	-2	NM_022980	53902	Mm.331970	NM_022980	ENSMUSG00000059713	Rcan3	AU041093|Csp3|Dscr1l2	regulator of calcineurin 3	protein-coding	0.155000	0.800995	
mm_6240.1	chr1	67038595	67038795	-	1	NA	NA	NA	139	NM_001190984	14768	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	0.095000	0.706468	
mm_155443.1	chrX	73494883	73495083	+	1	NA	NA	NA	-8103	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.000000	0.467662	
mm_5901.1	chr1	54809883	54810083	-	1	NA	NA	NA	116404	NM_001081433	329154	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.025000	0.517413	
mm_51230.1	chr6	71374226	71374426	+	1	NA	NA	NA	899	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.040000	0.542289	
mm_113846.1	chr13	47201423	47201623	+	1	NA	NA	NA	7520	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.020000	0.527363	
mm_143013.1	chr17	56462093	56462293	-	1	NA	NA	NA	28	NM_001252456	19280	Mm.258771	NM_011218	ENSMUSG00000013236	Ptprs	AL022616|PTP|PTP-NU3|PTPNU-3|PTPsigma|Ptpt9|R-PTP-S|RPTPsigma	protein tyrosine phosphatase, receptor type, S	protein-coding	0.085000	0.666667	
mm_71140.1	chr8	39045950	39046150	+	1	NA	NA	NA	40183	NM_030254	80286	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	0.005000	0.472637	57(GGCTTTTTAAAA,-,0.00)
mm_128671.1	chr15	60187227	60187427	-	1	NA	NA	NA	-170709	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.005000	0.363184	
mm_26151.1	chr3	138143390	138143590	+	1	NA	NA	NA	-48	NM_175389	108943	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	0.100000	0.626866	
mm_117593.1	chr13	89742287	89742487	-	1	NA	NA	NA	125	NM_001081249	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.060000	0.592040	
mm_19700.1	chr2	103766402	103766602	-	1	NA	NA	NA	-5252	NM_153126	98956	Mm.288005	NM_153126	ENSMUSG00000027185	Nat10	AI429152	N-acetyltransferase 10	protein-coding	0.005000	0.368159	
mm_85563.1	chr9	106891814	106892014	-	1	NA	NA	NA	24	NM_029103	74840	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	0.115000	0.696517	
mm_54770.1	chr6	41523847	41524047	-	1	NA	NA	NA	2171	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.522388	
mm_726.1	chr1	42953035	42953235	+	1	NA	NA	NA	263	NM_053107	93690	Mm.444976	NM_053107	ENSMUSG00000041907	Gpr45	9230112G11Rik|AW046772	G protein-coupled receptor 45	protein-coding	0.095000	0.756219	
mm_152812.1	chr19	23087428	23087628	-	1	NA	NA	NA	-53698	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.030000	0.527363	-35(CCATATAAAAAC,-,0.00)
mm_114212.1	chr13	56163025	56163225	+	1	NA	NA	NA	15760	NM_145976	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.000000	0.497512	
mm_80304.1	chr9	73217204	73217404	+	1	NA	NA	NA	103835	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0.000000	0.388060	
mm_75841.1	chr8	70601250	70601450	-	1	NA	NA	NA	6869	NM_023627	71780	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.075000	0.711443	
mm_107737.1	chr12	57951110	57951310	+	1	NA	NA	NA	-260594	NM_009216	20605	Mm.278336	NM_009216	ENSMUSG00000035431	Sstr1	SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1	somatostatin receptor 1	protein-coding	0.025000	0.562189	
mm_60490.1	chr7	44478529	44478729	+	1	NA	NA	NA	-5888	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.497512	
mm_154375.1	chrM	11014	11214	+	1	NA	NA	NA	NA	NA									0.030000	0.432836	
mm_52234.1	chr6	104492860	104493060	+	1	NA	NA	NA	-84	NM_017383	53870	Mm.321671	NM_017383	ENSMUSG00000030092	Cntn6	NB-3	contactin 6	protein-coding	0.010000	0.477612	-77(TCTTTTATGCCA,+,0.00)
mm_95221.1	chr11	44399885	44400085	+	1	NA	NA	NA	-78	NM_001303244	16160	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.000000	0.467662	45(GAGTATATAAGC,-,0.00)
mm_42243.1	chr5	113828809	113829009	+	1	NA	NA	NA	1592	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.025000	0.512438	
mm_79538.1	chr9	57910382	57910582	+	1	NA	NA	NA	-504	NM_027086	69459	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0.040000	0.517413	
mm_164906.1	chr18	69923381	69923581	-	1	NA	NA	NA	-2078	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.020000	0.557214	
mm_64879.1	chr7	14446562	14446762	-	1	NA	NA	NA	-75	NM_175250	76971	Mm.290727	NM_175250	ENSMUSG00000030378	Sult2a8	2810007J24Rik	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8	protein-coding	0.005000	0.378109	46(GAGTTTTAAAGA,-,0.00)
mm_58047.1	chr6	136828052	136828252	-	1	NA	NA	NA	64	NM_021714	60321	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	0.085000	0.646766	
mm_122930.1	chr14	54961626	54961826	-	1	NA	NA	NA	4881	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.015000	0.577114	
mm_30495.1	chr3	157533969	157534169	-	1	NA	NA	NA	-328	NM_017381	53861	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding	0.100000	0.611940	
mm_30686.1	chr4	11342302	11342502	+	1	NA	NA	NA	-20271	NM_001081201	381510	Mm.331486	NM_001081201	ENSMUSG00000045205	Dpy19l4	Gm1023|Narg3	dpy-19-like 4 (C. elegans)	protein-coding	0.050000	0.527363	
mm_25288.1	chr3	105803528	105803728	+	1	NA	NA	NA	-2247	NM_145541	109905	Mm.101922	NM_145541	ENSMUSG00000068798	Rap1a	AI848598|G-22K|Krev-1|Rap1	RAS-related protein-1a	protein-coding	0.020000	0.482587	
mm_55015.1	chr6	48840650	48840850	-	1	NA	NA	NA	238	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.020000	0.552239	
mm_15951.1	chr2	165969575	165969775	+	1	NA	NA	NA	-22962	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.025000	0.467662	
mm_172521.1	chr7	81789403	81789603	+	1	NA	NA	NA	-50	NM_026077	67290	Mm.248391	NM_026077	ENSMUSG00000025102	3110040N11Rik	AI851475	RIKEN cDNA 3110040N11 gene	protein-coding	0.075000	0.636816	
mm_107197.1	chr12	25318043	25318243	+	1	NA	NA	NA	188969	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.005000	0.452736	
mm_109372.1	chr12	109649434	109649634	+	1	NA	NA	NA	-83	NR_046304	100861570		NR_046304	ENSMUSG00000084549	DQ267100	-	snoRNA DQ267100	snoRNA	0.010000	0.343284	
mm_89165.1	chr10	86300454	86300654	+	1	NA	NA	NA	142	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.095000	0.681592	
mm_48567.1	chr5	143269888	143270088	-	1	NA	NA	NA	34	NM_017467	54201	Mm.6666	NM_017467	ENSMUSG00000046658	Zfp316	Emzf1|Mzf3|Znf316	zinc finger protein 316	protein-coding	0.130000	0.751244	
mm_58929.1	chr7	17973339	17973539	+	1	NA	NA	NA	1272	NM_023289	66996	Mm.36666	NM_023289	ENSMUSG00000030368	Ceacam11	1600015D01Rik	carcinoembryonic antigen-related cell adhesion molecule 11	protein-coding	0.000000	0.437811	
mm_163481.1	chr12	107903830	107904030	+	1	NA	NA	NA	99484	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.015000	0.487562	
mm_173009.1	chrM	192	392	+	1	NA	NA	NA	NA	NA									0.045000	0.383085	
mm_139996.1	chr17	72938289	72938489	+	1	NA	NA	NA	20084	NM_029999	77889	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.010000	0.542289	
mm_166188.1	chr5	33061818	33062018	+	1	NA	NA	NA	-42301	NM_019810	20537	Mm.25237	NM_019810	ENSMUSG00000011034	Slc5a1	Sglt1	solute carrier family 5 (sodium/glucose cotransporter), member 1	protein-coding	0.005000	0.393035	
mm_36917.1	chr4	108105053	108105253	-	1	NA	NA	NA	13394	NM_011327	20280	Mm.379011	NM_011327	ENSMUSG00000028603	Scp2	AA409774|AA409893|C76618|C79031|NSL-TP|SCP-2|SCP-X|SCPX|ns-LTP	sterol carrier protein 2, liver	protein-coding	0.005000	0.432836	
mm_42262.1	chr5	114130270	114130470	+	1	NA	NA	NA	-65	NM_001040691	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.070000	0.716418	
mm_129760.1	chr15	82403234	82403434	-	1	NA	NA	NA	3860	NM_010005	13101	Mm.174372	NM_010005	ENSMUSG00000094806	Cyp2d10	AI303445|Cyp2d|P450-2D	cytochrome P450, family 2, subfamily d, polypeptide 10	protein-coding	0.015000	0.542289	
mm_79853.1	chr9	64960100	64960300	+	1	NA	NA	NA	-632	NM_001077631	69882	Mm.272616	NM_175153	ENSMUSG00000034263	Vwa9	2010321M09Rik	von Willebrand factor A domain containing 9	protein-coding	0.015000	0.507463	
mm_79747.1	chr9	62367897	62368097	+	1	NA	NA	NA	26654	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.040000	0.562189	
mm_27414.1	chr3	51396637	51396837	-	1	NA	NA	NA	-190	NR_028121	67749	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	0.055000	0.547264	52(CTCTATTAGAGC,-,0.00)
mm_7242.1	chr1	93635063	93635263	-	1	NA	NA	NA	564	NM_021537	59041	Mm.28761	NM_021537	ENSMUSG00000026277	Stk25	1500019J11Rik|AU018434|C86992|Ste20-like|Ysk1	serine/threonine kinase 25 (yeast)	protein-coding	0.090000	0.701493	
mm_109334.1	chr12	109581423	109581623	+	1	NA	NA	NA	1290	NR_030573	100124466		NR_030573	ENSMUSG00000077025	Mir493	Mirn493|mmu-mir-493	microRNA 493	ncRNA	0.015000	0.517413	
mm_107415.1	chr12	34853589	34853789	+	1	NA	NA	NA	63406	NM_001271386	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.005000	0.497512	
mm_123078.1	chr14	55727679	55727879	-	1	NA	NA	NA	-5603	NM_019519	56187	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0.020000	0.507463	-32(TCCTTTATAAGC,-,0.00)
mm_8915.1	chr1	163313413	163313613	-	1	NA	NA	NA	137	NM_011127	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.030000	0.517413	
mm_36243.1	chr4	63367424	63367624	-	1	NA	NA	NA	5075	NM_011016	18406	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0.015000	0.527363	
mm_130324.1	chr15	97665807	97666007	-	1	NA	NA	NA	39915	NM_028003	71919	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.050000	0.487562	
mm_12901.1	chr2	84809250	84809450	+	1	NA	NA	NA	10522	NM_019949	56791	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.000000	0.512438	
mm_40821.1	chr5	72634921	72635121	+	1	NA	NA	NA	7731	NM_007723	12788	Mm.436652	NM_007723	ENSMUSG00000067220	Cnga1	Cncg	cyclic nucleotide gated channel alpha 1	protein-coding	0.010000	0.522388	
mm_57160.1	chr6	122764654	122764854	-	1	NA	NA	NA	-22009	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.095000	0.651741	
mm_144208.1	chr18	9707525	9707725	+	1	NA	NA	NA	-23	NM_130449	140792	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.120000	0.736318	
mm_49756.1	chr6	34755568	34755768	+	1	NA	NA	NA	-24764	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.055000	0.611940	
mm_41088.1	chr5	87682446	87682646	+	1	NA	NA	NA	16338	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.268657	-82(GTTTTAAAAGTC,+,0.00),-73(GTCTTTAAATGG,-,0.00)
mm_98733.1	chr11	96352793	96352993	+	1	NA	NA	NA	1261	NM_134032	103889	Mm.281153	NM_134032	ENSMUSG00000075588	Hoxb2	AI894218|Hox-2.8|Hoxbes2	homeobox B2	protein-coding	0.055000	0.592040	-32(TCTTTTAAGCCA,+,0.00)
mm_122341.1	chr14	37135158	37135358	-	1	NA	NA	NA	64	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.080000	0.592040	
mm_19376.1	chr2	91194735	91194935	-	1	NA	NA	NA	200	NM_013839	22259	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0.045000	0.636816	
mm_125412.1	chr15	41788856	41789056	+	1	NA	NA	NA	-78	NM_001130165	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.165000	0.781095	
mm_58840.1	chr7	16838058	16838258	+	1	NA	NA	NA	-4744	NM_001252458	101540	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.015000	0.597015	
mm_46661.1	chr5	108675546	108675746	-	1	NA	NA	NA	-281	NM_174870	231583	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0.015000	0.547264	
mm_49722.1	chr6	34598521	34598721	+	1	NA	NA	NA	117	NM_001347100	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.005000	0.522388	
mm_34413.1	chr4	145254655	145254855	+	1	NA	NA	NA	-7885	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.030000	0.412935	
mm_140153.1	chr17	80127605	80127805	+	1	NA	NA	NA	234	NM_176963	319625	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.030000	0.537313	
mm_33251.1	chr4	127168229	127168429	+	1	NA	NA	NA	-875	NM_198618	242667	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	discs, large (Drosophila) homolog-associated protein 3	protein-coding	0.045000	0.666667	
mm_39400.1	chr5	14027818	14028018	+	1	NA	NA	NA	2642	NM_011348	20349	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	0.000000	0.328358	
mm_136383.1	chr16	92825998	92826198	-	1	NA	NA	NA	-24	NM_001111022	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.010000	0.427861	
mm_90291.1	chr10	123633994	123634194	+	1	NA	NA	NA	370018	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	0.015000	0.358209	
mm_96516.1	chr11	68476226	68476426	+	1	NA	NA	NA	-26693	NM_001004435	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.020000	0.552239	
mm_145452.1	chr18	60222446	60222646	+	1	NA	NA	NA	10469	NM_001033767	240327	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.005000	0.393035	
mm_164144.1	chr15	59425031	59425231	+	1	NA	NA	NA	50933	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.015000	0.462687	
mm_125236.1	chr15	34237962	34238162	+	1	NA	NA	NA	36	NM_033521	114128	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	0.075000	0.646766	
mm_73472.1	chr8	106683044	106683244	+	1	NA	NA	NA	76	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.090000	0.656716	
mm_37414.1	chr4	122861219	122861419	-	1	NA	NA	NA	24738	NM_007598	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.005000	0.492537	
mm_76491.1	chr8	85840688	85840888	-	1	NA	NA	NA	161	NM_028007	71927	Mm.61018	NM_028007	ENSMUSG00000031703	Itfg1	2310047C21Rik|AI314457|Cda08|D8Wsu49e	integrin alpha FG-GAP repeat containing 1	protein-coding	0.125000	0.731343	
mm_145972.1	chr18	67933883	67934083	+	1	NA	NA	NA	726	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.075000	0.651741	
mm_71049.1	chr8	33697047	33697247	+	1	NA	NA	NA	-34767	NM_001167921	68153	Mm.286104	NM_026584	ENSMUSG00000031585	Gtf2e2	34kDa|AI462509|C330006J08Rik	general transcription factor II E, polypeptide 2 (beta subunit)	protein-coding	0.040000	0.552239	
mm_97673.1	chr11	79711243	79711443	+	1	NA	NA	NA	-626	NR_029579	387188		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	0.125000	0.731343	
mm_157426.1	chrX	38564830	38565030	-	1	NA	NA	NA	11266	NM_028288	72584	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	0.080000	0.691542	
mm_142100.1	chr17	35835361	35835561	-	1	NA	NA	NA	2840	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.065000	0.626866	
mm_122633.1	chr14	51145782	51145982	-	1	NA	NA	NA	885	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.010000	0.527363	
mm_101813.1	chr11	46389337	46389537	-	1	NA	NA	NA	78	NM_001281968	16428	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	0.030000	0.507463	
mm_24115.1	chr3	88157987	88158187	+	1	NA	NA	NA	15715	NM_001310593	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.045000	0.651741	
mm_45796.1	chr5	87566014	87566214	-	1	NA	NA	NA	2892	NM_016771	53315	Mm.6824	NM_016771	ENSMUSG00000029273	Sult1d1	5033411P13Rik|AI987815|ST1d1|SULT-N|Sultn	sulfotransferase family 1D, member 1	protein-coding	0.005000	0.407960	
mm_66548.1	chr7	45211431	45211631	-	1	NA	NA	NA	352	NM_015789	50722	Mm.27287	NM_015789	ENSMUSG00000030792	Dkkl1	AI414495|SGY|SGY-1|SGY1|Soggy|mSgy	dickkopf-like 1	protein-coding	0.030000	0.592040	
mm_10012.1	chr1	191899093	191899293	-	1	NA	NA	NA	-7588	NM_009579	22782	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	0.000000	0.492537	
mm_136200.1	chr16	89818097	89818297	-	1	NA	NA	NA	155	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.055000	0.601990	
mm_84388.1	chr9	65422935	65423135	-	1	NA	NA	NA	-262	NM_178933	330962	Mm.335247	NM_178933	ENSMUSG00000053862	Slc51b	Ostb	solute carrier family 51, beta subunit	protein-coding	0.025000	0.512438	-98(GGCTATAAAAGG,-,0.00)
mm_41748.1	chr5	102845022	102845222	+	1	NA	NA	NA	115	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.010000	0.552239	
mm_103809.1	chr11	82991713	82991913	-	1	NA	NA	NA	17	NM_172796	237886	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.030000	0.537313	
mm_3105.1	chr1	134494554	134494754	+	1	NA	NA	NA	-6	NM_145510	98710	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	0.120000	0.701493	
mm_153966.1	chr19	47854816	47855016	-	1	NA	NA	NA	-57	NM_010362	14873	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0.070000	0.626866	-36(CGCCTTTAAAGG,-,0.00),-35(GCCTTTAAAGGG,+,0.00),-35(GCCTTTAAAGGG,-,0.00),-34(CCTTTAAAGGGA,+,0.00)
mm_131667.1	chr16	20651588	20651788	+	1	NA	NA	NA	36	NM_134101	21762	Mm.243234	NM_134101	ENSMUSG00000006998	Psmd2	9430095H01Rik|AA407121|TEG-190|Tex190	proteasome (prosome, macropain) 26S subunit, non-ATPase, 2	protein-coding	0.110000	0.701493	
mm_73328.1	chr8	105279269	105279469	+	1	NA	NA	NA	2922	NM_030152	78688	Mm.475715	NM_030152	ENSMUSG00000014776	Nol3	ARC|B430311C09Rik|MYC|NOP|Nop30	nucleolar protein 3 (apoptosis repressor with CARD domain)	protein-coding	0.035000	0.572139	
mm_104728.1	chr11	98326107	98326307	-	1	NA	NA	NA	3438	NM_010895	18013	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0.055000	0.587065	
mm_14996.1	chr2	152353442	152353642	+	1	NA	NA	NA	7873	NR_033505	791417	Mm.451219	NR_033505	ENSMUSG00000068062	Gm14164	OTTMUSG00000015846	predicted gene 14164	ncRNA	0.050000	0.597015	32(GTCTTTAAACCC,+,0.00)
mm_34764.1	chr4	152478080	152478280	+	1	NA	NA	NA	38	NM_153424	260305	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	0.070000	0.616915	
mm_161860.1	chr18	31774110	31774310	+	1	NA	NA	NA	13594	NM_001242430	225339	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0.015000	0.398010	
mm_139181.1	chr17	47593517	47593717	+	1	NA	NA	NA	150	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.130000	0.741294	
mm_36840.1	chr4	106678537	106678737	-	1	NA	NA	NA	49	NM_001172073	72354	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	0.035000	0.542289	
mm_11764.1	chr2	38533703	38533903	+	1	NA	NA	NA	21927	NM_001159631	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.015000	0.512438	
mm_81081.1	chr9	106224192	106224392	+	1	NA	NA	NA	1694	NM_031178	81897	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	0.015000	0.557214	
mm_97668.1	chr11	79660616	79660816	+	1	NA	NA	NA	14370	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	0.120000	0.701493	
mm_85186.1	chr9	96696303	96696503	-	1	NA	NA	NA	35272	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.030000	0.507463	
mm_33169.1	chr4	126024731	126024931	+	1	NA	NA	NA	172	NM_001252651	12986	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.020000	0.616915	
mm_90196.1	chr10	120212917	120213117	+	1	NA	NA	NA	4191	NM_026617	68212	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	0.000000	0.432836	
mm_93397.1	chr10	107643450	107643650	-	1	NA	NA	NA	76477	NM_001081432	237523	Mm.391418	NM_001081432	ENSMUSG00000035916	Ptprq	-	protein tyrosine phosphatase, receptor type, Q	protein-coding	0.035000	0.432836	-94(CCCCATTAAAGC,-,0.00),26(CTTTATATAGTT,+,0.00)
mm_142467.1	chr17	45601951	45602151	-	1	NA	NA	NA	16	NM_001177468	653016	Mm.45676	NM_001177468	ENSMUSG00000079471	Gm7325	EG653016|Esgp	predicted gene 7325	protein-coding	0.010000	0.562189	
mm_10963.1	chr2	25701544	25701744	+	1	NA	NA	NA	1570	NM_153558	227627	Mm.44630	NM_153558	ENSMUSG00000062061	Obp2a	BC027556|Lcn13	odorant binding protein 2A	protein-coding	0.050000	0.517413	
mm_19995.1	chr2	118728300	118728500	-	1	NA	NA	NA	38	NM_177568	18796	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	0.020000	0.562189	-72(GGCTATAAGAGC,-,0.00)
mm_150317.1	chr19	34573554	34573754	+	1	NA	NA	NA	-9875	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.030000	0.492537	
mm_31642.1	chr4	59581495	59581695	+	1	NA	NA	NA	32	NM_024255	72479	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0.105000	0.646766	
mm_80037.1	chr9	68966630	68966830	+	1	NA	NA	NA	201384	NR_033299	320440	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.040000	0.592040	
mm_156008.1	chrX	106920525	106920725	+	1	NA	NA	NA	0	NM_175271	78134	Mm.90147	NM_175271	ENSMUSG00000049929	Lpar4	5730485F04Rik|Gpr23|LPA4|p2y9	lysophosphatidic acid receptor 4	protein-coding	0.030000	0.527363	
mm_166800.1	chr7	3502661	3502861	-	1	NA	NA	NA	-209	NM_177363	245126	Mm.245747	NM_177363	ENSMUSG00000053338	Tarm1	9930022N03Rik|ENSMUSG00000053338|Gm9904|OLT-2	T cell-interacting, activating receptor on myeloid cells 1	protein-coding	0.010000	0.427861	
mm_30023.1	chr3	135665392	135665592	-	1	NA	NA	NA	26055	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.020000	0.457711	75(GCTTTTAAGGAT,+,0.00)
mm_88426.1	chr10	77259214	77259414	+	1	NA	NA	NA	14	NM_030262	80294	Mm.203556	NM_030262	ENSMUSG00000020260	Pofut2	2310011G23Rik|AI256847|BC003494|C21orf80|FUT13	protein O-fucosyltransferase 2	protein-coding	0.125000	0.726368	
mm_155673.1	chrX	90744765	90744965	+	1	NA	NA	NA	-147277	NM_001101450	212952	Mm.477436	NM_001101450	ENSMUSG00000091497	Gm44	-	predicted gene 44	protein-coding	0.005000	0.432836	
mm_172007.1	chr6	109505199	109505399	-	1	NA	NA	NA	676658	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.060000	0.527363	25(AACTTTAAATGG,-,0.00)
mm_150951.1	chr19	46328361	46328561	+	1	NA	NA	NA	277	NM_133694	68431	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	0.075000	0.631841	
mm_94824.1	chr11	23284212	23284412	+	1	NA	NA	NA	-22583	NM_001190401	17847	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.010000	0.333333	
mm_168966.1	chr12	80946288	80946488	+	1	NA	NA	NA	889	NM_001347415	20384	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0.055000	0.537313	54(CGACTTAAAAGG,-,0.00)
mm_150440.1	chr19	37697699	37697899	+	1	NA	NA	NA	-9	NM_007811	13082	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0.090000	0.601990	33(GGCCTTATAAAG,-,0.00),35(CCTTATAAAGAG,+,0.00)
mm_24414.1	chr3	90509563	90509763	+	1	NA	NA	NA	-165	NM_001293782	66511	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	0.045000	0.507463	
mm_145177.1	chr18	47055962	47056162	+	1	NA	NA	NA	97186	NM_178377	69456	Mm.210734	NM_178377	ENSMUSG00000042705	Commd10	2310003A05Rik|AU019438|DRWMS2	COMM domain containing 10	protein-coding	0.010000	0.328358	
mm_69332.1	chr7	128740398	128740598	-	1	NA	NA	NA	-69	NM_145955	210711	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0.105000	0.721393	
mm_22848.1	chr3	28245354	28245554	+	1	NA	NA	NA	-17760	NM_001163007	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.035000	0.487562	
mm_147187.1	chr18	37178608	37178808	-	1	NA	NA	NA	34739	NM_001003672	353237	Mm.308500	NM_001003672	ENSMUSG00000102697	Pcdhac2	CNRc2	protocadherin alpha subfamily C, 2	protein-coding	0.025000	0.522388	
mm_68633.1	chr7	118188003	118188203	-	1	NA	NA	NA	55534	NM_001031814	233789	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	0.000000	0.293532	
mm_10603.1	chr2	18698934	18699134	+	1	NA	NA	NA	12	NM_001001334	381350	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	0.100000	0.666667	
mm_113330.1	chr13	31191823	31192023	+	1	NA	NA	NA	49163	NR_045957	73924	Mm.417825	NR_045957	ENSMUSG00000087460	4930401O12Rik	-	RIKEN cDNA 4930401O12 gene	ncRNA	0.015000	0.417910	
mm_12802.1	chr2	79786503	79786703	+	1	NA	NA	NA	78823	NM_001290743	75276	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0.025000	0.552239	
mm_48885.1	chr5	151233680	151233880	-	1	NA	NA	NA	-43587	NM_146258	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.110000	0.711443	
mm_77519.1	chr8	122895665	122895865	-	1	NA	NA	NA	47391	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.040000	0.482587	
mm_67210.1	chr7	74367044	74367244	-	1	NA	NA	NA	187636	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.020000	0.517413	
mm_14219.1	chr2	127357064	127357264	+	1	NA	NA	NA	-6122	NM_009633	11552	Mm.347390	NM_009633	ENSMUSG00000058620	Adra2b	Adra-2b|[a]2B|a2b-AR|alpha2-C2|alpha2B	adrenergic receptor, alpha 2b	protein-coding	0.000000	0.522388	
mm_21739.1	chr2	164777944	164778144	-	1	NA	NA	NA	1690	NM_009394	21925	Mm.1716	NM_009394	ENSMUSG00000017300	Tnnc2	Tncs	troponin C2, fast	protein-coding	0.040000	0.562189	
mm_133382.1	chr16	84715515	84715715	+	1	NA	NA	NA	1475	NR_029565	387173		NR_029565	ENSMUSG00000065397	Mir155	Mirn155|mir-155|mmu-mir-155	microRNA 155	ncRNA	0.015000	0.447761	
mm_101197.1	chr11	19015021	19015221	-	1	NA	NA	NA	3848	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.025000	0.422886	-35(GAGCATTAAAAG,-,0.00),-33(GCATTAAAAGTC,+,0.00),27(CCTTTTAGATGC,+,0.00)
mm_160206.1	chr7	84853366	84853566	+	1	NA	NA	NA	-105	NM_146415	258410	Mm.484702	NM_146415	ENSMUSG00000070460	Olfr291	MOR254-2	olfactory receptor 291	protein-coding	0.000000	0.308458	
mm_101002.1	chr11	8468577	8468777	-	1	NA	NA	NA	195858	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.065000	0.676617	
mm_135352.1	chr16	43698858	43699058	-	1	NA	NA	NA	-34774	NM_001146325	100043314	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	ENSMUSG00000071552|Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0.025000	0.452736	
mm_97556.1	chr11	78931519	78931719	+	1	NA	NA	NA	6328	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.005000	0.527363	
mm_112669.1	chr13	16027330	16027530	+	1	NA	NA	NA	15579	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.492537	
mm_75378.1	chr8	45381991	45382191	-	1	NA	NA	NA	200	NM_153535	212326	Mm.51259	NM_153535	ENSMUSG00000070044	Fam149a	AW213256|mKIAA4166	family with sequence similarity 149, member A	protein-coding	0.015000	0.547264	
mm_36844.1	chr4	106678616	106678816	-	1	NA	NA	NA	-30	NM_001172073	72354	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	0.075000	0.601990	
mm_50462.1	chr6	48908758	48908958	+	1	NA	NA	NA	3872	NM_001161621	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.005000	0.477612	
mm_50459.1	chr6	48907702	48907902	+	1	NA	NA	NA	2816	NM_001161621	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.030000	0.611940	
mm_169434.1	chr14	54318391	54318591	-	1	NA	NA	NA	-35566	NM_010991	18348	Mm.436623	NM_010991	ENSMUSG00000048153	Olfr49	IC6|MOR1181	olfactory receptor 49	protein-coding	0.075000	0.537313	-31(GGCTATAAAAGC,-,0.00)
mm_109978.1	chr12	12940300	12940500	-	1	NA	NA	NA	1436	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.055000	0.562189	
mm_103278.1	chr11	72170705	72170905	-	1	NA	NA	NA	32566	NM_028963	74477	Mm.289697	NM_028963	ENSMUSG00000020807	4933427D14Rik	C85113|Kiaa0753|MNR	RIKEN cDNA 4933427D14 gene	protein-coding	0.000000	0.497512	26(ACTTTTATAGCT,+,0.00)
mm_98422.1	chr11	94644278	94644478	+	1	NA	NA	NA	9376	NM_177752	268465	Mm.358937	NM_177752	ENSMUSG00000039055	Eme1	6820428D13	essential meiotic structure-specific endonuclease 1	protein-coding	0.020000	0.497512	
mm_30389.1	chr3	152247160	152247360	-	1	NA	NA	NA	19060	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.010000	0.383085	22(GTTTTTAAAGAG,+,0.00)
mm_83426.1	chr9	44980256	44980456	-	1	NA	NA	NA	75	NM_009850	12502	Mm.335106	NM_009850	ENSMUSG00000002033	Cd3g	Ctg-3|Ctg3|T3g	CD3 antigen, gamma polypeptide	protein-coding	0.000000	0.557214	
mm_34961.1	chr4	156006818	156007018	+	1	NA	NA	NA	-6777	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.005000	0.388060	
mm_138654.1	chr17	35867909	35868109	+	1	NA	NA	NA	1394	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.015000	0.517413	-63(GTCCATAAATGG,-,0.00)
mm_39636.1	chr5	24474070	24474270	+	1	NA	NA	NA	21993	NM_139153	213990	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.075000	0.731343	
mm_70338.1	chr8	4524700	4524900	+	1	NA	NA	NA	31395	NM_026058	67260	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0.005000	0.432836	
mm_134692.1	chr16	22560972	22561172	-	1	NA	NA	NA	-28888	NR_106170	102465887		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0.005000	0.472637	
mm_24423.1	chr3	90537136	90537336	+	1	NA	NA	NA	-3987	NM_026416	67860	Mm.331185	NM_026416	ENSMUSG00000074457	S100a16	2300002L21Rik|AI325039|AI663996|DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding	0.010000	0.567164	-60(GTGTTTAAAAAA,-,0.00)
mm_48097.1	chr5	137062895	137063095	-	1	NA	NA	NA	9277	NM_008871	18787	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.005000	0.532338	
mm_103300.1	chr11	72550101	72550301	-	1	NA	NA	NA	45	NM_029932	77577	Mm.46185	NM_029932	ENSMUSG00000020798	Spns3	9830002I17Rik	spinster homolog 3	protein-coding	0.015000	0.582090	
mm_3480.1	chr1	150105451	150105651	+	1	NA	NA	NA	5520	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.015000	0.467662	
mm_15295.1	chr2	155382939	155383139	+	1	NA	NA	NA	1183	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.000000	0.527363	
mm_41550.1	chr5	92933227	92933427	+	1	NA	NA	NA	35334	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.040000	0.492537	
mm_73854.1	chr8	117919984	117920184	+	1	NA	NA	NA	-118155	NM_026758	68533	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	0.000000	0.363184	
mm_121565.1	chr14	122534277	122534477	+	1	NA	NA	NA	49	NM_144844	110821	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.090000	0.701493	
mm_112704.1	chr13	18101725	18101925	+	1	NA	NA	NA	-1623	NR_046032	73992	Mm.159110	NR_046032		4930448F12Rik	-	RIKEN cDNA 4930448F12 gene	ncRNA	0.005000	0.442786	-34(AGCTATATAAGG,-,0.00)
mm_105305.1	chr11	102688010	102688210	-	1	NA	NA	NA	9615	NM_025918	52715	Mm.277638	NM_025918	ENSMUSG00000020925	Ccdc43	2610001E01Rik|D11Ertd707e	coiled-coil domain containing 43	protein-coding	0.000000	0.328358	
mm_22358.1	chr2	181020482	181020682	-	1	NA	NA	NA	18595	NM_015730	11438	Mm.252369	NM_015730	ENSMUSG00000027577	Chrna4	Acra-4|Acra4|EBN1|ENFL1	cholinergic receptor, nicotinic, alpha polypeptide 4	protein-coding	0.015000	0.457711	-25(ACCCATATAAGA,-,0.00)
mm_34524.1	chr4	149104142	149104342	+	1	NA	NA	NA	100	NM_001025296	13347	Mm.41433	NM_010044	ENSMUSG00000028974	Dffa	A330085O09Rik|DFF35|Dff45|ICAD|ICAD-L|ICAD-S	DNA fragmentation factor, alpha subunit	protein-coding	0.070000	0.626866	
mm_76835.1	chr8	105264502	105264702	-	1	NA	NA	NA	-8	NM_001033161	71609	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	0.110000	0.731343	
mm_108553.1	chr12	84417178	84417378	+	1	NA	NA	NA	78	NM_025525	66381	Mm.24846	NM_025525	ENSMUSG00000098134	Rnf113a2	2310020H19Rik|AI426758|Rnf113a	ring finger protein 113A2	protein-coding	0.120000	0.656716	
mm_29025.1	chr3	102165469	102165669	-	1	NA	NA	NA	39124	NM_177545	229658	Mm.118004	NM_177545	ENSMUSG00000027860	Vangl1	Kitenin|Lpp2|Stb2|Stbm	vang-like 1 (van gogh, Drosophila)	protein-coding	0.045000	0.572139	
mm_98222.1	chr11	88049314	88049514	+	1	NA	NA	NA	2041	NM_173374	110809	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	0.035000	0.452736	
mm_140276.1	chr17	84957032	84957232	+	1	NA	NA	NA	291	NR_027929	68531	Mm.249695	NR_027929	ENSMUSG00000097047	1110020A21Rik	2600015P10Rik	RIKEN cDNA 1110020A21 gene	ncRNA	0.045000	0.547264	
mm_54403.1	chr6	31561968	31562168	-	1	NA	NA	NA	1869	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	0.010000	0.442786	
mm_151533.1	chr19	58818784	58818984	+	1	NA	NA	NA	-24470	NM_026208	67507	Mm.27027	NM_026208	ENSMUSG00000026931	1700019N19Rik	-	RIKEN cDNA 1700019N19 gene	protein-coding	0.015000	0.482587	
mm_140031.1	chr17	74338625	74338825	+	1	NA	NA	NA	-262	NM_001162870	50850	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	0.115000	0.716418	
mm_28685.1	chr3	95402684	95402884	-	1	NA	NA	NA	57	NR_015490	67654	Mm.75066	NR_015490	ENSMUSG00000105734	4930558C23Rik	-	RIKEN cDNA 4930558C23 gene	ncRNA	0.015000	0.422886	
mm_66702.1	chr7	45920640	45920840	-	1	NA	NA	NA	109	NM_001146346	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.015000	0.577114	
mm_117721.1	chr13	95444734	95444934	-	1	NA	NA	NA	-3	NM_198408	12919	Mm.316614	NM_198408	ENSMUSG00000021680	Crhbp	CRH-BP	corticotropin releasing hormone binding protein	protein-coding	0.025000	0.542289	30(CTCTATAAAAGA,-,0.00)
mm_43564.1	chr5	137630676	137630876	+	1	NA	NA	NA	1653	NR_033148	100316903	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0.005000	0.537313	
mm_145451.1	chr18	60214727	60214927	+	1	NA	NA	NA	2750	NM_001033767	240327	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.000000	0.323383	-82(CCTTTTATGACC,+,0.00)
mm_173005.1	chrM	1972	2172	+	1	NA	NA	NA	NA	NA									0.035000	0.442786	
mm_63344.1	chr7	126967458	126967658	+	1	NA	NA	NA	-8356	NM_026638	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.020000	0.597015	
mm_35081.1	chr4	7442456	7442656	-	1	NA	NA	NA	-118132	NR_040645	71510	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0.000000	0.477612	
mm_141445.1	chr17	29852656	29852856	-	1	NA	NA	NA	35126	NM_001081160	74762	Mm.40901	NM_001081160	ENSMUSG00000043557	Mdga1	1200011I03Rik|GPIM|Mamdc3	MAM domain containing glycosylphosphatidylinositol anchor 1	protein-coding	0.010000	0.572139	
mm_30822.1	chr4	21870934	21871134	+	1	NA	NA	NA	-8641	NM_172687	230027	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	0.015000	0.338308	
mm_32899.1	chr4	119026704	119026904	+	1	NA	NA	NA	42307	NR_131914	433751	Mm.224312	NR_131914	ENSMUSG00000066060	Gm12866	OTTMUSG00000008833	predicted gene 12866	ncRNA	0.010000	0.502488	-99(TGCTTTTTAGGG,-,0.00),-97(CTTTTTAGGGAA,+,0.00)
mm_113023.1	chr13	22035772	22035972	+	1	NA	NA	NA	51	NM_175665	319184	Mm.358955	NM_175665	ENSMUSG00000062727	Hist1h2bk	-	histone cluster 1, H2bk	protein-coding	0.045000	0.507463	
mm_148874.1	chr19	6497799	6497999	+	1	NA	NA	NA	45171	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.100000	0.721393	
mm_50021.1	chr6	41118355	41118555	+	1	NA	NA	NA	-82946	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.025000	0.527363	
mm_129385.1	chr15	78191547	78191747	-	1	NA	NA	NA	12590	NM_001330686	19293	Mm.2766	NM_013645	ENSMUSG00000005716	Pvalb	PV|Parv|Pva	parvalbumin	protein-coding	0.030000	0.517413	
mm_32777.1	chr4	116701730	116701930	+	1	NA	NA	NA	6555	NM_025962	67096	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0.010000	0.363184	
mm_50573.1	chr6	49051753	49051953	+	1	NA	NA	NA	15335	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.020000	0.577114	
mm_86605.1	chr10	13553113	13553313	+	1	NA	NA	NA	-71	NM_001347361	56535	Mm.282711	NM_019961	ENSMUSG00000019809	Pex3	1700014F15Rik|2810027F19Rik|2900010N04Rik	peroxisomal biogenesis factor 3	protein-coding	0.105000	0.656716	
mm_94401.1	chr11	5740648	5740848	+	1	NA	NA	NA	428	NM_178623	72046	Mm.271657	NM_178623	ENSMUSG00000049680	Urgcp	2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507	upregulator of cell proliferation	protein-coding	0.045000	0.616915	
mm_39633.1	chr5	24451882	24452082	+	1	NA	NA	NA	-195	NM_001256431	213990	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.165000	0.786070	
mm_140609.1	chr17	10721457	10721657	-	1	NA	NA	NA	118634	NM_027032	69310	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.000000	0.452736	
mm_54389.1	chr6	31218604	31218804	-	1	NA	NA	NA	-230	NR_110469	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.060000	0.547264	55(CCTTATCTGGGC,+,0.00)
mm_155227.1	chrX	57066403	57066603	+	1	NA	NA	NA	12669	NM_029371	72459	Mm.2152	NM_028242	ENSMUSG00000067873	Htatsf1	1600023H17Rik|2600017A12Rik|2700077B20Rik|TAT-SF1	HIV TAT specific factor 1	protein-coding	0.010000	0.402985	
mm_33094.1	chr4	124695922	124696122	+	1	NA	NA	NA	-2468	NM_026031	67205	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11l	2700082D03Rik|CGI-94|Cgi94|Utp11	UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	protein-coding	0.030000	0.557214	
mm_38230.1	chr4	136021590	136021790	-	1	NA	NA	NA	-41	NM_013736	27224	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	0.125000	0.716418	
mm_158169.1	chrX	103623560	103623760	-	1	NA	NA	NA	94	NR_028381	78878	Mm.259724	NR_028380	ENSMUSG00000086370	Ftx	B230206F22Rik|BB219131|NCRNA00182|Thcytx	Ftx transcript, Xist regulator (non-protein coding)	ncRNA	0.090000	0.616915	
mm_126303.1	chr15	79516342	79516542	+	1	NA	NA	NA	34	NM_134090	105785	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	0.155000	0.771144	
mm_136950.1	chr17	14676888	14677088	+	1	NA	NA	NA	17274	NM_011581	21826	Mm.26688	NM_011581	ENSMUSG00000023885	Thbs2	TSP2|Thbs-2	thrombospondin 2	protein-coding	0.045000	0.507463	
mm_100437.1	chr11	119486132	119486332	+	1	NA	NA	NA	-5115	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.010000	0.507463	
mm_67318.1	chr7	79596786	79596986	-	1	NA	NA	NA	20771	NM_019799	56315	Mm.10909	NM_019799	ENSMUSG00000030549	Rhcg	BB065800	Rhesus blood group-associated C glycoprotein	protein-coding	0.000000	0.477612	
mm_55581.1	chr6	71397266	71397466	-	1	NA	NA	NA	23939	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.025000	0.517413	-59(CCCTTTAAATGC,+,0.00),-59(CCCTTTAAATGC,-,0.00)
mm_148793.1	chr19	6165672	6165872	+	1	NA	NA	NA	1314	NM_028967	74481	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	4933430F08Rik	basic leucine zipper transcription factor, ATF-like 2	protein-coding	0.010000	0.467662	
mm_62012.1	chr7	91269212	91269412	+	1	NA	NA	NA	178526	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.333333	
mm_122245.1	chr14	33447092	33447292	-	1	NA	NA	NA	-34	NM_016700	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.175000	0.766169	
mm_20269.1	chr2	126675980	126676180	-	1	NA	NA	NA	257	NM_001271470	14391	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.050000	0.512438	
mm_69728.1	chr7	140787749	140787949	-	1	NA	NA	NA	5	NM_001143765	74075	Mm.46102	NM_001143765	ENSMUSG00000025480	Syce1	4933406J07Rik	synaptonemal complex central element protein 1	protein-coding	0.070000	0.651741	
mm_71434.1	chr8	46505993	46506193	+	1	NA	NA	NA	15127	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.020000	0.502488	
mm_17373.1	chr2	26933241	26933441	-	1	NA	NA	NA	170	NM_011512	20932	Mm.300594	NM_011512	ENSMUSG00000014867	Surf4	AL033340|AL033373|Surf-4	surfeit gene 4	protein-coding	0.120000	0.736318	
mm_9218.1	chr1	171234182	171234382	-	1	NA	NA	NA	67	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.055000	0.616915	
mm_22921.1	chr3	31096276	31096476	+	1	NA	NA	NA	1318	NM_001039090	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.015000	0.338308	
mm_70078.1	chr7	142653577	142653777	-	1	NA	NA	NA	1319	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.015000	0.552239	
mm_131164.1	chr16	6996608	6996808	+	1	NA	NA	NA	-73127	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.010000	0.427861	
mm_134355.1	chr16	16718016	16718216	-	1	NA	NA	NA	5	NR_045920	74066	Mm.61161	NM_028739		4933404G15Rik	4933401J20Rik	RIKEN cDNA 4933404G15 gene	ncRNA	0.000000	0.412935	
mm_16274.1	chr2	173737384	173737584	+	1	NA	NA	NA	-87	NM_019806	56491	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.115000	0.691542	
mm_111456.1	chr12	98385888	98386088	-	1	NA	NA	NA	117353	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.000000	0.457711	
mm_94923.1	chr11	29508400	29508600	+	1	NA	NA	NA	6533	NM_026465	67939	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0.005000	0.288557	
mm_72336.1	chr8	79225794	79225994	+	1	NA	NA	NA	22689	NM_026315	67687	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.030000	0.497512	
mm_159185.1	chr2	112242779	112242979	+	1	NA	NA	NA	3038	NM_207206	99010	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.010000	0.552239	
mm_134363.1	chr16	16865843	16866043	-	1	NA	NA	NA	-1958	NM_001190325	16136	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	0.000000	0.557214	-35(CACTATAAAAGG,-,0.00)
mm_126338.1	chr15	79900145	79900345	+	1	NA	NA	NA	5222	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.000000	0.552239	
mm_125068.1	chr15	25940984	25941184	+	1	NA	NA	NA	258	NM_025459	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.025000	0.532338	34(CTTCTTAGAGCC,+,0.00)
mm_11579.1	chr2	32961579	32961779	+	1	NA	NA	NA	-33	NM_009076	269261	Mm.250030	NM_009076	ENSMUSG00000038900	Rpl12	E430018F03	ribosomal protein L12	protein-coding	0.100000	0.631841	
mm_119783.1	chr14	54181464	54181664	+	1	NA	NA	NA	72365	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.417910	
mm_102079.1	chr11	52277056	52277256	-	1	NA	NA	NA	5439	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.010000	0.527363	
mm_162619.1	chr1	183388883	183389083	+	1	NA	NA	NA	-2	NM_001277959	21339	Mm.383556	NM_021466	ENSMUSG00000072258	Taf1a	TAFI48|mTAFI48	TATA-box binding protein associated factor, RNA polymerase I, A	protein-coding	0.100000	0.626866	
mm_144451.1	chr18	23310057	23310257	+	1	NA	NA	NA	137	NM_001285813	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.040000	0.592040	
mm_55301.1	chr6	54817548	54817748	-	1	NA	NA	NA	732	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.025000	0.462687	-35(GGCCTTTAAAAC,-,0.00),-33(CCTTTAAAACTG,+,0.00)
mm_115912.1	chr13	23465749	23465949	-	1	NA	NA	NA	52	NM_013483	12231	Mm.1420	NM_013483	ENSMUSG00000000706	Btn1a1	Btn	butyrophilin, subfamily 1, member A1	protein-coding	0.020000	0.547264	
mm_20963.1	chr2	151961825	151962025	-	1	NA	NA	NA	5692	NR_035478	100316704		NR_035478	ENSMUSG00000088491	Mir1953	mir-1953|mmu-mir-1953	microRNA 1953	ncRNA	0.010000	0.497512	
mm_11643.1	chr2	34958227	34958427	+	1	NA	NA	NA	3445	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.015000	0.497512	
mm_5436.1	chr1	34842799	34842999	-	1	NA	NA	NA	151	NM_001160235	214469	Mm.120151	NM_174997	ENSMUSG00000037503	Fam168b	mKIAA4042	family with sequence similarity 168, member B	protein-coding	0.175000	0.810945	
mm_114008.1	chr13	52596860	52597060	+	1	NA	NA	NA	78	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.010000	0.527363	
mm_33054.1	chr4	123116175	123116375	+	1	NA	NA	NA	27	NM_181859	353371	Mm.189660	NM_181859	ENSMUSG00000076438	Oxct2b	Scot-t2	3-oxoacid CoA transferase 2B	protein-coding	0.065000	0.671642	
mm_76481.1	chr8	85553158	85553358	-	1	NA	NA	NA	2013	NM_019794	56445	Mm.475573	NM_019794	ENSMUSG00000031701	Dnaja2	1500017M13Rik|2010206B19Rik|DNAJ|DNJ3|Dnaj3|HIRIP4|PRO3015|mDj3	DnaJ heat shock protein family (Hsp40) member A2	protein-coding	0.030000	0.462687	
mm_29455.1	chr3	113531332	113531532	-	1	NA	NA	NA	43330	NM_007446	11722	Mm.439727	NM_007446	ENSMUSG00000074264	Amy1	Amy-1|Amy1a|C030014B17Rik	amylase 1, salivary	protein-coding	0.000000	0.393035	
mm_136502.1	chr16	96443518	96443718	-	1	NA	NA	NA	-4	NM_008405	16415	Mm.12872	NM_008405	ENSMUSG00000000157	Itgb2l	5033406G21Rik|pactolus	integrin beta 2-like	protein-coding	0.005000	0.567164	
mm_25292.1	chr3	105870805	105871005	+	1	NA	NA	NA	47	NM_001174169	69296	Mm.235024	NM_027025	ENSMUSG00000000562	Tmigd3	1700001d09rik|4930578J19Rik	transmembrane and immunoglobulin domain containing 3	protein-coding	0.020000	0.477612	
mm_157203.1	chrX	12616642	12616842	-	1	NA	NA	NA	28983	NM_027439	70495	Mm.25148	NM_027439	ENSMUSG00000031007	Atp6ap2	(P)RR|5730403E06Rik|APT6M8-9|ATP6M8-9|Atp6ip2|M8-9|PRR	ATPase, H+ transporting, lysosomal accessory protein 2	protein-coding	0.000000	0.313433	
mm_163332.1	chr12	8771337	8771537	+	1	NA	NA	NA	41	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.060000	0.636816	
mm_9876.1	chr1	185329266	185329466	-	1	NA	NA	NA	35	NM_198653	381314	Mm.275841	NM_198653	ENSMUSG00000026618	Iars2	2010002H18Rik|C79125	isoleucine-tRNA synthetase 2, mitochondrial	protein-coding	0.095000	0.681592	
mm_165820.1	chr3	146651267	146651467	-	1	NA	NA	NA	-50	NM_029144	75015	Mm.250432	NM_029144	ENSMUSG00000048652	4930503B20Rik	1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13	RIKEN cDNA 4930503B20 gene	protein-coding	0.015000	0.527363	
mm_147736.1	chr18	61065333	61065533	-	1	NA	NA	NA	20283	NM_008809	18596	Mm.4146	NM_008809	ENSMUSG00000024620	Pdgfrb	AI528809|CD140b|PDGFR-1|Pdgfr	platelet derived growth factor receptor, beta polypeptide	protein-coding	0.010000	0.467662	
mm_151909.1	chr19	5799487	5799687	-	1	NA	NA	NA	3085	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.000000	0.323383	-51(GCTTTAATGACC,+,0.00),-15(GCTTTTATATTA,+,0.00)
mm_100454.1	chr11	119724905	119725105	+	1	NA	NA	NA	109360	NR_045313	319454	Mm.442144	NR_045312	ENSMUSG00000085081	Rptoros	A430071A18Rik	regulatory associated protein of MTOR, complex 1, opposite strand	ncRNA	0.030000	0.522388	
mm_165915.1	chr4	57956235	57956435	-	1	NA	NA	NA	76	NM_011660	22166	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.135000	0.701493	10(TTCTATAAAGAG,-,0.00)
mm_33301.1	chr4	129008481	129008681	+	1	NA	NA	NA	15357	NM_001033966	11637	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.015000	0.378109	
mm_138681.1	chr17	35916824	35917024	+	1	NA	NA	NA	-272	NM_001163818	52040	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	0.120000	0.651741	27(GGGTATAAAAGA,-,0.00)
mm_30092.1	chr3	138239494	138239694	-	1	NA	NA	NA	69	NR_045760	68369	Mm.441136	NR_045760	ENSMUSG00000099146	0610031O16Rik	-	RIKEN cDNA 0610031O16 gene	ncRNA	0.025000	0.482587	
mm_46538.1	chr5	105701942	105702142	-	1	NA	NA	NA	1232	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.015000	0.472637	
mm_47050.1	chr5	116083168	116083368	-	1	NA	NA	NA	-22	NM_001101546	545798	Mm.483995	NM_001101546	ENSMUSG00000079278	Tmem233	DSPB2|Gm13843|OTTMUSG00000014722	transmembrane protein 233	protein-coding	0.035000	0.611940	
mm_146808.1	chr18	20746133	20746333	-	1	NA	NA	NA	171	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.145000	0.741294	
mm_98174.1	chr11	87755795	87755995	+	1	NA	NA	NA	-969	NR_029555	387160		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.025000	0.407960	
mm_39640.1	chr5	24586613	24586813	+	1	NA	NA	NA	-37	NM_133913	100910	Mm.140672	NM_133913	ENSMUSG00000038181	Chpf2	2010209O12Rik|AW060945|mKIAA1402|mir-671	chondroitin polymerizing factor 2	protein-coding	0.070000	0.651741	
mm_108022.1	chr12	73616138	73616338	+	1	NA	NA	NA	31442	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.030000	0.388060	
mm_155902.1	chrX	101672956	101673156	+	1	NA	NA	NA	32838	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.000000	0.422886	-22(TTTTTTAAGGCC,+,0.00)
mm_99581.1	chr11	104231423	104231623	+	1	NA	NA	NA	87	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.120000	0.701493	
mm_86733.1	chr10	19067177	19067377	+	1	NA	NA	NA	-51867	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.020000	0.388060	
mm_44695.1	chr5	30407932	30408132	-	1	NA	NA	NA	53900	NM_001286421	83762	Mm.244502	NM_031875	ENSMUSG00000062372	Otof	-	otoferlin	protein-coding	0.015000	0.562189	
mm_2083.1	chr1	87676155	87676355	+	1	NA	NA	NA	55943	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.000000	0.522388	
mm_6747.1	chr1	83407935	83408135	-	1	NA	NA	NA	165	NM_172430	77629	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	0.055000	0.557214	
mm_71882.1	chr8	69812307	69812507	+	1	NA	NA	NA	3720	NM_198101	78816	Mm.324305	NM_198101	ENSMUSG00000036246	Gmip	5031419I10Rik	Gem-interacting protein	protein-coding	0.010000	0.417910	
mm_129553.1	chr15	79441989	79442189	-	1	NA	NA	NA	-32	NM_013767	27373	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.185000	0.825871	-96(CCCTTTAAATCC,+,0.00)
mm_154036.1	chr19	53528875	53529075	-	1	NA	NA	NA	-343	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.080000	0.666667	
mm_14803.1	chr2	145886811	145887011	+	1	NA	NA	NA	-16330	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.020000	0.447761	
mm_69875.1	chr7	141562864	141563064	-	1	NA	NA	NA	784	NM_007459	11772	Mm.253090	NM_007459	ENSMUSG00000002957	Ap2a2	2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25	adaptor-related protein complex 2, alpha 2 subunit	protein-coding	0.040000	0.582090	
mm_76113.1	chr8	80788572	80788772	-	1	NA	NA	NA	-49213	NM_053124	93762	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.045000	0.557214	
mm_62164.1	chr7	97211336	97211536	+	1	NA	NA	NA	114528	NM_001177412	244144	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.010000	0.348259	62(CTTTTTAGACAG,+,0.00)
mm_65442.1	chr7	25390011	25390211	-	1	NA	NA	NA	1	NM_001039507	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.010000	0.621891	
mm_134234.1	chr16	11804892	11805092	-	1	NA	NA	NA	25290	NR_126430	73761	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.010000	0.477612	
mm_109684.1	chr12	113140433	113140633	+	1	NA	NA	NA	-72	NM_001347443	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.130000	0.716418	
mm_70534.1	chr8	13037281	13037481	+	1	NA	NA	NA	73	NM_001242368	14058	Mm.262589	NM_007972	ENSMUSG00000031444	F10	Cf10|fX	coagulation factor X	protein-coding	0.015000	0.517413	
mm_92762.1	chr10	81092458	81092658	-	1	NA	NA	NA	6314	NM_145365	208677	Mm.294693	NM_145365	ENSMUSG00000035041	Creb3l3	BC010786|CREB-H|D10Bur1e	cAMP responsive element binding protein 3-like 3	protein-coding	0.040000	0.646766	
mm_127194.1	chr15	99055074	99055274	+	1	NA	NA	NA	0	NM_001163588	19132	Mm.2477	NM_013639	ENSMUSG00000023484	Prph	Prph1	peripherin	protein-coding	0.060000	0.661692	
mm_123000.1	chr14	54992702	54992902	-	1	NA	NA	NA	1747	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.025000	0.572139	
mm_45951.1	chr5	90366118	90366318	-	1	NA	NA	NA	-33	NM_198010	81702	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0.130000	0.756219	
mm_87291.1	chr10	42502008	42502208	+	1	NA	NA	NA	54	NM_017472	54198	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.120000	0.716418	
mm_117310.1	chr13	67495547	67495747	-	1	NA	NA	NA	4875	NM_001007575	238693	Mm.478914	NM_001007575	ENSMUSG00000071291	Zfp58	A530094I17Rik|Mfg-1|Mfg1|Rslcan5|Zfp817	zinc finger protein 58	protein-coding	0.005000	0.363184	
mm_1292.1	chr1	64303101	64303301	+	1	NA	NA	NA	-181812	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.025000	0.507463	
mm_162166.1	chrX	97072496	97072696	+	1	NA	NA	NA	0	NM_001033361	245526	Mm.336164	NM_001033361	ENSMUSG00000031212	Pgr15l	-	G protein-coupled receptor 15-like	protein-coding	0.070000	0.671642	
mm_155545.1	chrX	74310913	74311113	+	1	NA	NA	NA	-2020	NM_138607	108160	Mm.4370	NM_138607	ENSMUSG00000001962	Fam50a	D0HXS9928E|XAP-5	family with sequence similarity 50, member A	protein-coding	0.000000	0.492537	
mm_108910.1	chr12	100206342	100206542	+	1	NA	NA	NA	6298	NM_001313934	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.005000	0.313433	
mm_93279.1	chr10	96077717	96077917	-	1	NA	NA	NA	137154	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.010000	0.353234	-27(CCTTTAATAGTG,+,0.00),16(AGGCCTAAAAGC,-,0.00)
mm_81335.1	chr9	108517493	108517693	+	1	NA	NA	NA	506	NM_175143	69232	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik	glutamine-rich 1	protein-coding	0.160000	0.646766	
mm_54906.1	chr6	47594959	47595159	-	1	NA	NA	NA	-29	NM_001146689	14056	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.110000	0.661692	
mm_79847.1	chr9	64812666	64812866	+	1	NA	NA	NA	1755	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.005000	0.363184	-38(TACTATAAAGAG,-,0.00)
mm_87962.1	chr10	63386463	63386663	+	1	NA	NA	NA	0	NM_013888	30045	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.035000	0.542289	
mm_26420.1	chr3	142614390	142614590	+	1	NA	NA	NA	-6173	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.005000	0.323383	-97(GTTTATATAGTA,+,0.00)
mm_19255.1	chr2	84774702	84774902	-	1	NA	NA	NA	627	NM_009776	12258	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.025000	0.666667	
mm_94086.1	chr10	128497297	128497497	-	1	NA	NA	NA	1288	NM_172259	216459	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	0.010000	0.577114	-34(GCCTATTTAAAC,-,0.00)
mm_132149.1	chr16	32102832	32103032	+	1	NA	NA	NA	3130	NM_025892	66994	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0.000000	0.388060	
mm_144746.1	chr18	35598593	35598793	+	1	NA	NA	NA	26	NM_026420	67869	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	0.105000	0.676617	
mm_34388.1	chr4	144927081	144927281	+	1	NA	NA	NA	34044	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.010000	0.522388	17(CACCTTTAAGGG,-,0.00),19(CCTTTAAGGGGA,+,0.00)
mm_41083.1	chr5	87677938	87678138	+	1	NA	NA	NA	11830	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.000000	0.298507	-8(TCTTTAATACAG,+,0.00)
mm_160524.1	chr9	36128655	36128855	-	1	NA	NA	NA	24	NM_001167587	546123	Mm.445255	NM_001167587	ENSMUSG00000091411	Gm5916	EG546123	predicted gene 5916	protein-coding	0.005000	0.537313	
mm_30156.1	chr3	142881828	142882028	-	1	NA	NA	NA	76	NM_178654	109333	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	0.170000	0.781095	
mm_61098.1	chr7	51878979	51879179	+	1	NA	NA	NA	112	NM_001330607	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.040000	0.572139	
mm_114682.1	chr13	80893702	80893902	+	1	NA	NA	NA	10380	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.000000	0.338308	-4(CCATTTATGCCA,+,0.00)
mm_88906.1	chr10	81179242	81179442	+	1	NA	NA	NA	381	NR_028549	100217454		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.020000	0.542289	
mm_30412.1	chr3	152264911	152265111	-	1	NA	NA	NA	1309	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.040000	0.497512	
mm_173108.1	chrX	157465733	157465933	-	1	NA	NA	NA	26213	NM_009214	20603	Mm.18652	NM_009214	ENSMUSG00000071708	Sms	AI427066|Gy|SPMSY|SpmST|gyro	spermine synthase	protein-coding	0.015000	0.378109	
mm_162866.1	chr10	93437030	93437230	+	1	NA	NA	NA	4023	NR_106161	102465791		NR_106161	ENSMUSG00000098679	Mir7688	Gm27874|mmu-mir-7688	microRNA 7688	ncRNA	0.025000	0.482587	
mm_158939.1	chr1	78197119	78197319	-	1	NA	NA	NA	-83	NM_001159520	18505	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	0.055000	0.592040	
mm_38101.1	chr4	134371524	134371724	-	1	NA	NA	NA	923	NM_019578	56219	Mm.30978	NM_019578	ENSMUSG00000028838	Extl1	D430033M16Rik	exostoses (multiple)-like 1	protein-coding	0.035000	0.606965	
mm_38828.1	chr4	149126593	149126793	-	1	NA	NA	NA	70	NM_007745	12854	Mm.6204	NM_007745	ENSMUSG00000028971	Cort	CST|PCST	cortistatin	protein-coding	0.055000	0.601990	
mm_53658.1	chr6	141275234	141275434	+	1	NA	NA	NA	26065	NM_018779	54611	Mm.103728	NM_018779	ENSMUSG00000041741	Pde3a	A930022O17Rik|C87899	phosphodiesterase 3A, cGMP inhibited	protein-coding	0.010000	0.427861	
mm_100964.1	chr11	6638548	6638748	-	1	NA	NA	NA	1	NM_011709	22373	Mm.268094	NM_011709	ENSMUSG00000000381	Wap	-	whey acidic protein	protein-coding	0.015000	0.577114	-34(TCCTTTAAATGC,-,0.00)
mm_39953.1	chr5	32133599	32133799	+	1	NA	NA	NA	-2773	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.040000	0.582090	
mm_102609.1	chr11	62457211	62457411	-	1	NA	NA	NA	21	NM_177229	20185	Mm.271814	NM_011308	ENSMUSG00000018501	Ncor1	5730405M06Rik|A230020K14Rik|N-CoR|RIP13|Rxrip13|mKIAA1047	nuclear receptor co-repressor 1	protein-coding	0.115000	0.756219	
mm_45492.1	chr5	71657874	71658074	-	1	NA	NA	NA	334	NM_010251	14397	Mm.248731	NM_010251	ENSMUSG00000029211	Gabra4	Gabra-4	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	protein-coding	0.150000	0.771144	
mm_85302.1	chr9	100539418	100539618	-	1	NA	NA	NA	6616	NM_010878	17973	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0.030000	0.427861	
mm_49693.1	chr6	33649987	33650187	+	1	NA	NA	NA	-379361	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.005000	0.363184	
mm_130987.1	chr15	103366494	103366694	-	1	NA	NA	NA	197	NM_010577	16402	Mm.16234	NM_010577	ENSMUSG00000000555	Itga5	Cd49e|Fnra|VLA5	integrin alpha 5 (fibronectin receptor alpha)	protein-coding	0.100000	0.721393	
mm_169635.1	chr15	47539905	47540105	+	1	NA	NA	NA	916700	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0.055000	0.517413	
mm_48139.1	chr5	137150227	137150427	-	1	NA	NA	NA	-34120	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.497512	
mm_151818.1	chr19	5510356	5510556	-	1	NA	NA	NA	33	NM_001024560	225861	Mm.20071	NM_001024560	ENSMUSG00000056185	Snx32	B930037P14Rik|Snx6b	sorting nexin 32	protein-coding	0.025000	0.547264	
mm_34121.1	chr4	139238800	139239000	+	1	NA	NA	NA	44789	NM_001271405	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.055000	0.562189	
mm_47378.1	chr5	122988999	122989199	-	1	NA	NA	NA	0	NM_001003953	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.060000	0.507463	
mm_65602.1	chr7	27361234	27361434	-	1	NA	NA	NA	-5326	NM_138676	192192	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	0.015000	0.442786	
mm_72896.1	chr8	90857983	90858183	+	1	NA	NA	NA	29248	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.000000	0.447761	
mm_124147.1	chr14	88470883	88471083	-	1	NA	NA	NA	413	NM_178685	219257	Mm.128861	NM_178685	ENSMUSG00000050505	Pcdh20	C630015B17Rik|Pcdh13	protocadherin 20	protein-coding	0.070000	0.651741	
mm_96895.1	chr11	70437574	70437774	+	1	NA	NA	NA	-581	NR_106064	102465670		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.020000	0.572139	
mm_111471.1	chr12	98574942	98575142	-	1	NA	NA	NA	85	NM_001316664	72258	Mm.196158	NM_029911	ENSMUSG00000033854	Kcnk10	1700024D23Rik|3010005K24Rik|Trek2	potassium channel, subfamily K, member 10	protein-coding	0.110000	0.726368	
mm_168970.1	chr12	83360612	83360812	+	1	NA	NA	NA	127024	NM_001267626	70127	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0.005000	0.462687	
mm_155132.1	chrX	49493010	49493210	+	1	NA	NA	NA	22660	NM_001081123	75404	Mm.44305	NM_001081123	ENSMUSG00000036198	Arhgap36	1100001E04Rik|rho-gap	Rho GTPase activating protein 36	protein-coding	0.000000	0.462687	
mm_135785.1	chr16	57071132	57071332	-	1	NA	NA	NA	114	NM_183281	69457	Mm.58105	NM_183281	ENSMUSG00000046748	Tmem45a2	2310005G13Rik	transmembrane protein 45A2	protein-coding	0.015000	0.383085	
mm_1185.1	chr1	62483302	62483502	+	1	NA	NA	NA	-219915	NM_001077406	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.010000	0.467662	
mm_99042.1	chr11	98964719	98964919	+	1	NA	NA	NA	4348	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.020000	0.616915	
mm_24234.1	chr3	88950625	88950825	+	1	NA	NA	NA	-443	NM_001164533	65111	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0.140000	0.751244	
mm_46317.1	chr5	100604112	100604312	-	1	NA	NA	NA	-32007	NM_139198	231507	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.015000	0.472637	
mm_25972.1	chr3	132904740	132904940	+	1	NA	NA	NA	-26244	NR_102298	101243624	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	0.005000	0.542289	
mm_146207.1	chr18	76856061	76856261	+	1	NA	NA	NA	-244	NM_001109743	664805	Mm.329543	NM_001109743	ENSMUSG00000091519	Skor2	Corl2|EG664805|Fussel18|Gm7348	SKI family transcriptional corepressor 2	protein-coding	0.065000	0.631841	-100(CCTTTAATGTGG,+,0.00)
mm_57009.1	chr6	121130931	121131131	-	1	NA	NA	NA	-9	NM_001270475	194401	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0.055000	0.626866	
mm_35421.1	chr4	35157352	35157552	-	1	NA	NA	NA	32	NM_178061	214944	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0.095000	0.676617	
mm_60157.1	chr7	39518013	39518213	+	1	NA	NA	NA	347	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.055000	0.447761	7(ATCTTTAAGAGG,-,0.00)
mm_56864.1	chr6	118419244	118419444	-	1	NA	NA	NA	73	NM_194339	213895	Mm.25269	NM_194339	ENSMUSG00000030138	Bms1	AA408648|AU020092|AU043373|BB007109|BC030906|Bms1l|mKIAA0187	BMS1, ribosome biogenesis factor	protein-coding	0.110000	0.676617	
mm_131166.1	chr16	7039476	7039676	+	1	NA	NA	NA	-30259	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.020000	0.552239	-47(CACTTTAAGAGC,-,0.00),-46(ACTTTAAGAGCG,+,0.00)
mm_97950.1	chr11	83664506	83664706	+	1	NA	NA	NA	2022	NM_013652	20303	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.010000	0.338308	
mm_122659.1	chr14	51912058	51912258	-	1	NA	NA	NA	1330	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.000000	0.477612	
mm_114977.1	chr13	97243962	97244162	+	1	NA	NA	NA	2957	NM_007930	13803	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.025000	0.437811	
mm_95611.1	chr11	53457187	53457387	+	1	NA	NA	NA	82	NM_027917	71774	Mm.274370	NM_027917	ENSMUSG00000018387	Shroom1	Apx|Shrm1	shroom family member 1	protein-coding	0.100000	0.726368	
mm_1874.1	chr1	85600917	85601117	+	1	NA	NA	NA	314	NM_001013817	434484	Mm.445821	NM_001013817	ENSMUSG00000070031	Sp140	-	Sp140 nuclear body protein	protein-coding	0.005000	0.552239	
mm_44547.1	chr5	24577385	24577585	-	1	NA	NA	NA	-18	NM_001190443	27407	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	0.105000	0.611940	
mm_64119.1	chr7	141079695	141079895	+	1	NA	NA	NA	26	NM_019762	56460	Mm.350037	NM_019762	ENSMUSG00000054065	Pkp3	2310056L12Rik	plakophilin 3	protein-coding	0.045000	0.681592	
mm_156456.1	chrX	142825539	142825739	+	1	NA	NA	NA	86639	NR_030523	723976		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	0.000000	0.412935	
mm_29.1	chr1	6214712	6214912	+	1	NA	NA	NA	150	NM_009826	12421	Mm.293811	NM_009826	ENSMUSG00000025907	Rb1cc1	2900055E04Rik|5930404L04Rik|Cc1|FIP200|LaXp180	RB1-inducible coiled-coil 1	protein-coding	0.155000	0.771144	
mm_92256.1	chr10	70644601	70644801	-	1	NA	NA	NA	7224	NR_045291	319646	Mm.483039	NR_045291	ENSMUSG00000037747	D630013N20Rik	-	RIKEN cDNA D630013N20 gene	ncRNA	0.000000	0.383085	
mm_109849.1	chr12	4595055	4595255	-	1	NA	NA	NA	2147	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.015000	0.398010	
mm_144879.1	chr18	36793741	36793941	+	1	NA	NA	NA	-82	NM_025594	66492	Mm.251155	NM_025594	ENSMUSG00000001383	Zmat2	2610510D14Rik|2900082I05Rik	zinc finger, matrin type 2	protein-coding	0.060000	0.567164	
mm_123687.1	chr14	69635032	69635232	-	1	NA	NA	NA	25656	NM_033325	94352	Mm.116714	NM_033325	ENSMUSG00000034205	Loxl2	1110004B06Rik|4930526G11Rik|9430067E15Rik	lysyl oxidase-like 2	protein-coding	0.010000	0.442786	
mm_107345.1	chr12	32819543	32819743	+	1	NA	NA	NA	-692	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.020000	0.388060	
mm_169632.1	chr15	47029402	47029602	+	1	NA	NA	NA	406197	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0.015000	0.477612	
mm_117114.1	chr13	60508703	60508903	-	1	NA	NA	NA	-93144	NM_001285917	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.025000	0.527363	
mm_112783.1	chr13	20095924	20096124	+	1	NA	NA	NA	5517	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.000000	0.417910	
mm_110144.1	chr12	26448528	26448728	-	1	NA	NA	NA	7824	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.005000	0.437811	
mm_81576.1	chr9	110422235	110422435	+	1	NA	NA	NA	2527	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.015000	0.442786	
mm_162756.1	chr10	61175529	61175729	+	1	NA	NA	NA	367	NM_023064	65971	Mm.30227	NM_023064	ENSMUSG00000020096	Tbata	1700021K02Rik|AI428928|Spatial|Titest	thymus, brain and testes associated	protein-coding	0.005000	0.577114	
mm_92402.1	chr10	76709227	76709427	-	1	NA	NA	NA	16717	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.020000	0.547264	
mm_19270.1	chr2	85086360	85086560	-	1	NA	NA	NA	1	NR_040504	74687	Mm.66996	NR_040504	ENSMUSG00000086969	4930443O20Rik	-	RIKEN cDNA 4930443O20 gene	ncRNA	0.000000	0.487562	
mm_15554.1	chr2	158439739	158439939	+	1	NA	NA	NA	29986	NM_001291138	228850	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0.000000	0.303483	
mm_102796.1	chr11	68852893	68853093	-	1	NA	NA	NA	138	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.110000	0.716418	
mm_148442.1	chr19	3948928	3949128	+	1	NA	NA	NA	-9780	NM_028545	73458	Mm.482922	NM_028545	ENSMUSG00000037263	Aldh3b3	1700055N04Rik	aldehyde dehydrogenase 3 family, member B3	protein-coding	0.005000	0.587065	
mm_22233.1	chr2	174438223	174438423	-	1	NA	NA	NA	716	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.030000	0.562189	
mm_116090.1	chr13	28718703	28718903	-	1	NA	NA	NA	-7930	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.000000	0.412935	
mm_4998.1	chr1	191906686	191906886	+	1	NA	NA	NA	5	NM_009579	22782	Mm.9024	NM_009579	ENSMUSG00000037434	Slc30a1	AI839647|C130040I11Rik|Znt1	solute carrier family 30 (zinc transporter), member 1	protein-coding	0.135000	0.686567	
mm_12524.1	chr2	72174144	72174344	+	1	NA	NA	NA	-111393	NM_023057	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.020000	0.348259	
mm_62413.1	chr7	101301327	101301527	+	1	NA	NA	NA	661	NM_001111111	73683	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.065000	0.517413	
mm_133722.1	chr16	93711831	93712031	+	1	NA	NA	NA	24	NM_027293	70028	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0.115000	0.766169	
mm_36914.1	chr4	108071548	108071748	-	1	NA	NA	NA	-15709	NR_105823	102465213		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	0.020000	0.442786	-33(GGGTTTAAAAGT,-,0.00)
mm_58721.1	chr7	13024276	13024476	+	1	NA	NA	NA	224	NM_011588	21849	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	0.155000	0.716418	
mm_122390.1	chr14	40965504	40965704	-	1	NA	NA	NA	1292	NM_145928	52588	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.000000	0.407960	
mm_107933.1	chr12	71309793	71309993	+	1	NA	NA	NA	9	NM_001190466	59036	Mm.46662	NM_021532	ENSMUSG00000044548	Dact1	4921528D17Rik|AI115603|DAPPER|DAPPER1|FRODO|Frd1|Frodo1|MDpr1|MTNG3|THYEX3	dishevelled-binding antagonist of beta-catenin 1	protein-coding	0.145000	0.786070	
mm_14389.1	chr2	129800512	129800712	+	1	NA	NA	NA	95	NM_001038635	67333	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	0.100000	0.671642	
mm_22867.1	chr3	28805410	28805610	+	1	NA	NA	NA	-1	NM_001347226	68028	Mm.371630	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0.135000	0.601990	-33(TTATATAAAAGC,-,0.00)
mm_21833.1	chr2	165473095	165473295	-	1	NA	NA	NA	2	NM_054055	114644	Mm.250738	NM_054055	ENSMUSG00000018459	Slc13a3	NaDC-3|NaDC3|SDCT2	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	protein-coding	0.115000	0.741294	
mm_130362.1	chr15	97770121	97770321	-	1	NA	NA	NA	-2555	NM_001177811	223864	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.015000	0.502488	
mm_20438.1	chr2	129306699	129306899	-	1	NA	NA	NA	3173	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.000000	0.507463	
mm_126599.1	chr15	82377089	82377289	+	1	NA	NA	NA	3071	NM_019823	56448	Mm.474216	NM_019823	ENSMUSG00000061740	Cyp2d22	2D22	cytochrome P450, family 2, subfamily d, polypeptide 22	protein-coding	0.010000	0.422886	
mm_40265.1	chr5	38500065	38500265	+	1	NA	NA	NA	1987	NM_145559	117591	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.030000	0.522388	
mm_20098.1	chr2	121036582	121036782	-	1	NA	NA	NA	195	NM_013513	13828	Mm.240051	NM_013513	ENSMUSG00000023216	Epb42	Epb4.2	erythrocyte membrane protein band 4.2	protein-coding	0.010000	0.547264	
mm_125443.1	chr15	46324484	46324684	+	1	NA	NA	NA	-1	NR_045509	71120	Mm.158571	NR_045509	ENSMUSG00000099751	1700022A22Rik	4933413D07Rik	RIKEN cDNA 1700022A22 gene	ncRNA	0.015000	0.527363	
mm_121221.1	chr14	103055060	103055260	+	1	NA	NA	NA	8148	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.045000	0.547264	
mm_157465.1	chrX	46293368	46293568	-	1	NA	NA	NA	35443	NR_045440	75133	Mm.417818	NR_045440	ENSMUSG00000085157	4930515L19Rik	-	RIKEN cDNA 4930515L19 gene	ncRNA	0.000000	0.482587	
mm_29037.1	chr3	102778234	102778434	-	1	NA	NA	NA	4380	NM_009432	22094	Mm.110730	NM_009432	ENSMUSG00000027857	Tshb	-	thyroid stimulating hormone, beta subunit	protein-coding	0.015000	0.467662	
mm_121381.1	chr14	118937859	118938059	+	1	NA	NA	NA	27	NM_008929	100037258	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.165000	0.786070	
mm_25974.1	chr3	133091735	133091935	+	1	NA	NA	NA	-20	NM_027927	71793	Mm.246726	NM_027927	ENSMUSG00000028016	Ints12	1110020M19Rik|2810027J24Rik|4930529N21Rik|A230056J18Rik|AI666778|Phf22|int12	integrator complex subunit 12	protein-coding	0.080000	0.582090	
mm_68220.1	chr7	104411005	104411205	-	1	NA	NA	NA	-52459	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.010000	0.353234	
mm_91439.1	chr10	33926934	33927134	-	1	NA	NA	NA	21923	NM_001162957	212892	Mm.131949	NM_001162957	ENSMUSG00000039552	Rsph4a	A230081C05|Rshl3	radial spoke head 4 homolog A (Chlamydomonas)	protein-coding	0.005000	0.477612	
mm_46015.1	chr5	90900631	90900831	-	1	NA	NA	NA	-3168	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.015000	0.373134	59(TCTTTTATGCCT,+,0.00)
mm_90390.1	chr10	127321823	127322023	+	1	NA	NA	NA	-41	NM_001285785	216445	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.010000	0.507463	
mm_94148.1	chr10	128743790	128743990	-	1	NA	NA	NA	166	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.095000	0.686567	
mm_171462.1	chr4	145670681	145670881	+	1	NA	NA	NA	84	NM_001103158	100041379	Mm.276881	NM_001103158	ENSMUSG00000058186	Zfp980	Gm13242|OTTMUSG00000011070	zinc finger protein 980	protein-coding	0.015000	0.547264	
mm_134894.1	chr16	29845646	29845846	-	1	NA	NA	NA	133378	NR_037689	328657	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.025000	0.497512	
mm_159999.1	chr6	119390062	119390262	-	1	NA	NA	NA	27321	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.005000	0.462687	-34(TCTTAAAAACCC,+,0.00),12(ATCCTTAAAAGA,-,0.00)
mm_167833.1	chr9	124424184	124424384	-	1	NA	NA	NA	497	NR_015516	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.100000	0.592040	
mm_72785.1	chr8	86806284	86806484	+	1	NA	NA	NA	-60378	NM_009172	20437	Mm.324553	NM_009172	ENSMUSG00000036840	Siah1a	AA982064|AI853500|Sinh1a	seven in absentia 1A	protein-coding	0.005000	0.477612	
mm_129730.1	chr15	82029495	82029695	-	1	NA	NA	NA	13226	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.025000	0.542289	
mm_68623.1	chr7	118116085	118116285	-	1	NA	NA	NA	-38	NM_170669	267019	Mm.288212	NM_170669	ENSMUSG00000008683	Rps15a	A630031B11Rik	ribosomal protein S15A	protein-coding	0.060000	0.497512	
mm_3420.1	chr1	146495503	146495703	+	1	NA	NA	NA	-63	NM_153539	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.010000	0.457711	
mm_156224.1	chrX	135742615	135742815	+	1	NA	NA	NA	23	NM_001005385	67298	Mm.271980	NM_026081	ENSMUSG00000043384	Gprasp1	2210415K24Rik|3110031O14Rik|C87852|GASP|GASP1	G protein-coupled receptor associated sorting protein 1	protein-coding	0.070000	0.552239	
mm_117140.1	chr13	60941820	60942020	-	1	NA	NA	NA	15	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding	0.005000	0.482587	
mm_17159.1	chr2	25234113	25234313	-	1	NA	NA	NA	21	NM_080854	142681	Mm.346652	NM_080854	ENSMUSG00000006469	Slc34a3	AI649385|Npt2c|Npt2c-v1|NptIIc|naPi-2c	solute carrier family 34 (sodium phosphate), member 3	protein-coding	0.010000	0.572139	
mm_28799.1	chr3	96197507	96197707	-	1	NA	NA	NA	-21	NM_026975	69168	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	0.080000	0.572139	
mm_55537.1	chr6	70773777	70773977	-	1	NA	NA	NA	18298	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.492537	
mm_882.1	chr1	52568382	52568582	+	1	NA	NA	NA	-62223	NR_024590	227094	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	0.005000	0.517413	
mm_80336.1	chr9	75052048	75052248	+	1	NA	NA	NA	14416	NM_021548	59046	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	0.010000	0.328358	
mm_11091.1	chr2	27886386	27886586	+	1	NA	NA	NA	61	NM_015734	12831	Mm.7281	NM_015734	ENSMUSG00000026837	Col5a1	AI413331	collagen, type V, alpha 1	protein-coding	0.095000	0.706468	
mm_40654.1	chr5	65130905	65131105	+	1	NA	NA	NA	-226	NM_175174	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.030000	0.467662	-70(AGCCATAAAAGA,-,0.00)
mm_60347.1	chr7	44358440	44358640	+	1	NA	NA	NA	16490	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.025000	0.557214	
mm_52202.1	chr6	100760167	100760367	+	1	NA	NA	NA	55533	NM_198612	232313	Mm.272037	NM_198612	ENSMUSG00000030074	Gxylt2	Glt8d4|Gm152	glucoside xylosyltransferase 2	protein-coding	0.015000	0.492537	
mm_29719.1	chr3	124425929	124426129	-	1	NA	NA	NA	-1	NM_027939	71824	Mm.331353	NM_027939	ENSMUSG00000027973	1700006A11Rik	-	RIKEN cDNA 1700006A11 gene	protein-coding	0.005000	0.457711	
mm_50522.1	chr6	49043899	49044099	+	1	NA	NA	NA	7481	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.025000	0.537313	
mm_95227.1	chr11	44518856	44519056	+	1	NA	NA	NA	-8	NM_028862	74315	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.195000	0.810945	
mm_21286.1	chr2	156970389	156970589	-	1	NA	NA	NA	21622	NM_013865	29812	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0.015000	0.477612	
mm_85641.1	chr9	107655222	107655422	-	1	NA	NA	NA	12077	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.055000	0.631841	
mm_108430.1	chr12	82245638	82245838	+	1	NA	NA	NA	-65611	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.000000	0.422886	40(GCCCATTAGAGC,-,0.00)
mm_115874.1	chr13	21721741	21721941	-	1	NA	NA	NA	-203	NM_178200	319186	Mm.277425	NM_178200	ENSMUSG00000096807	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	0.045000	0.482587	
mm_146807.1	chr18	20746031	20746231	-	1	NA	NA	NA	273	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.160000	0.815920	
mm_33760.1	chr4	134343594	134343794	+	1	NA	NA	NA	228	NM_001346578	230810	Mm.358876	NM_001039677	ENSMUSG00000028836	Slc30a2	ZnT-2|Znt2	solute carrier family 30 (zinc transporter), member 2	protein-coding	0.030000	0.592040	
mm_159962.1	chr6	89940566	89940766	-	1	NA	NA	NA	-159	NM_011684	22297	Mm.431981	NM_011684	ENSMUSG00000044248	Vmn1r45	V1RA9|V1r2|V1ra11|V1ra2|mV1R2	vomeronasal 1 receptor 45	protein-coding	0.005000	0.492537	
mm_128525.1	chr15	54481779	54481979	-	1	NA	NA	NA	71105	NM_173422	239447	Mm.82400	NM_173422	ENSMUSG00000038591	Colec10	CL-L1	collectin sub-family member 10	protein-coding	0.010000	0.462687	
mm_126622.1	chr15	83165977	83166177	+	1	NA	NA	NA	6131	NM_029787	109754	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.025000	0.567164	
mm_4564.1	chr1	177447353	177447553	+	1	NA	NA	NA	1632	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.025000	0.472637	
mm_94720.1	chr11	20631881	20632081	+	1	NA	NA	NA	4	NM_001038625	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.090000	0.761194	
mm_125836.1	chr15	74958401	74958601	+	1	NA	NA	NA	3395	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.025000	0.572139	
mm_154836.1	chrX	19160531	19160731	+	1	NA	NA	NA	-13660	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.010000	0.383085	
mm_69736.1	chr7	140882202	140882402	-	1	NA	NA	NA	7	NM_022433	64384	Mm.29760	NM_022433	ENSMUSG00000025486	Sirt3	2310003L23Rik|AI848213|Sir2l3	sirtuin 3	protein-coding	0.080000	0.626866	
mm_2810.1	chr1	130874068	130874268	+	1	NA	NA	NA	8391	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.025000	0.492537	
mm_15215.1	chr2	154223657	154223857	+	1	NA	NA	NA	15	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.040000	0.661692	
mm_155526.1	chrX	74271353	74271553	+	1	NA	NA	NA	637	NM_052835	110954	Mm.100113	NM_052835	ENSMUSG00000008682	Rpl10	D0HXS648|DXHXS648|DXHXS648E|QM|QM16	ribosomal protein L10	protein-coding	0.040000	0.452736	
mm_84803.1	chr9	77251971	77252171	-	1	NA	NA	NA	95799	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.040000	0.482587	
mm_66429.1	chr7	44668029	44668229	-	1	NA	NA	NA	-2626	NM_028021	71960	Mm.158289	NM_028021	ENSMUSG00000030739	Myh14	2400004E04Rik|II-C|NHMCII|NMHC II-C	myosin, heavy polypeptide 14	protein-coding	0.010000	0.582090	
mm_65556.1	chr7	27133561	27133761	-	1	NA	NA	NA	13706	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.030000	0.432836	
mm_37803.1	chr4	130574094	130574294	-	1	NA	NA	NA	-158	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.130000	0.800995	
mm_135724.1	chr16	55821838	55822038	-	1	NA	NA	NA	200	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.140000	0.736318	
mm_10564.1	chr2	18055112	18055312	+	1	NA	NA	NA	-25	NM_010804	17354	Mm.209175	NM_010804	ENSMUSG00000026743	Mllt10	Af10|B130021D15Rik|D630001B22Rik|mKIAA4140	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10	protein-coding	0.045000	0.462687	
mm_98541.1	chr11	95010008	95010208	+	1	NA	NA	NA	229	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.125000	0.711443	
mm_84087.1	chr9	58204219	58204419	-	1	NA	NA	NA	0	NM_001161541	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.065000	0.592040	
mm_50230.1	chr6	42350912	42351112	+	1	NA	NA	NA	1184	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.020000	0.616915	
mm_33847.1	chr4	135856147	135856347	+	1	NA	NA	NA	176	NM_010178	14105	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0.140000	0.726368	
mm_25614.1	chr3	118431342	118431542	+	1	NA	NA	NA	-2415	NR_029551	387155		NR_029551	ENSMUSG00000065569	Mir137	Mirn137|mir-137|mmu-mir-137	microRNA 137	ncRNA	0.040000	0.547264	
mm_59897.1	chr7	30307570	30307770	+	1	NA	NA	NA	-1083	NM_198027	233065	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	0.005000	0.437811	-75(TTTTTTAAAGTG,+,0.00)
mm_68308.1	chr7	105749598	105749798	-	1	NA	NA	NA	2537	NM_009906	12751	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	0.025000	0.532338	
mm_96706.1	chr11	69655496	69655696	+	1	NA	NA	NA	559	NM_009235	20670	Mm.347499	NM_009235	ENSMUSG00000041287	Sox15	-	SRY (sex determining region Y)-box 15	protein-coding	0.070000	0.611940	
mm_126800.1	chr15	87544125	87544325	+	1	NA	NA	NA	-74	NM_001252310	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.215000	0.880597	
mm_11141.1	chr2	28496788	28496988	+	1	NA	NA	NA	-3	NM_139197	227671	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	0.010000	0.562189	
mm_98201.1	chr11	87795937	87796137	+	1	NA	NA	NA	2253	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.035000	0.587065	
mm_158153.1	chrX	103475564	103475764	-	1	NA	NA	NA	7569	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.015000	0.432836	40(CTCTTAATAGGC,+,0.00)
mm_50007.1	chr6	41059053	41059253	+	1	NA	NA	NA	-23644	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.427861	
mm_127080.1	chr15	97467119	97467319	+	1	NA	NA	NA	-219932	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.035000	0.527363	
mm_163521.1	chr12	115623547	115623747	-	1	NA	NA	NA	72147	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.000000	0.412935	
mm_158832.1	chrX	168124260	168124460	-	1	NA	NA	NA	-1363	NM_001290427	333605	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	0.030000	0.542289	
mm_58255.1	chr6	145075977	145076177	-	1	NA	NA	NA	80	NM_007532	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.075000	0.616915	
mm_111167.1	chr12	83597059	83597259	-	1	NA	NA	NA	-12	NM_183154	217695	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0.050000	0.636816	
mm_95392.1	chr11	49250490	49250690	+	1	NA	NA	NA	38	NM_001110150	17308	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.085000	0.736318	
mm_68393.1	chr7	109525611	109525811	-	1	NA	NA	NA	5579	NR_028079	100302499	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	0.025000	0.492537	
mm_124335.1	chr14	103844093	103844293	-	1	NA	NA	NA	283	NM_001136061	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.045000	0.557214	
mm_61403.1	chr7	73409289	73409489	+	1	NA	NA	NA	-33615	NR_040324	319783	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.090000	0.686567	
mm_139388.1	chr17	52213063	52213263	+	1	NA	NA	NA	330436	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.005000	0.487562	
mm_50787.1	chr6	54039467	54039667	+	1	NA	NA	NA	-365	NM_001163640	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.075000	0.676617	
mm_11213.1	chr2	29629660	29629860	+	1	NA	NA	NA	10040	NM_001039086	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.015000	0.601990	
mm_172961.1	chr9	88482425	88482625	-	1	NA	NA	NA	-128	NM_001284328	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.145000	0.726368	
mm_36146.1	chr4	59474767	59474967	-	1	NA	NA	NA	-36234	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.005000	0.388060	
mm_68215.1	chr7	104409736	104409936	-	1	NA	NA	NA	-51190	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.000000	0.338308	
mm_14291.1	chr2	128833619	128833819	+	1	NA	NA	NA	15416	NM_028248	72477	Mm.259688	NM_028248	ENSMUSG00000014353	Tmem87b	2610301K12Rik|2810431I02Rik|AU014804	transmembrane protein 87B	protein-coding	0.005000	0.398010	7(CTTTTTATGGGT,+,0.00)
mm_144592.1	chr18	32162918	32163118	+	1	NA	NA	NA	-71	NM_011946	26405	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0.160000	0.726368	
mm_21255.1	chr2	156312315	156312515	-	1	NA	NA	NA	-58	NM_027585	70873	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	0.100000	0.701493	
mm_24859.1	chr3	95893827	95894027	+	1	NA	NA	NA	6	NM_146134	226548	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	0.070000	0.641791	
mm_100898.1	chr11	6066278	6066478	-	1	NA	NA	NA	-630	NM_007595	12323	Mm.439733	NM_007595	ENSMUSG00000057897	Camk2b	CaMKII	calcium/calmodulin-dependent protein kinase II, beta	protein-coding	0.020000	0.547264	
mm_50413.1	chr6	48746075	48746275	+	1	NA	NA	NA	-22	NM_175035	317757	Mm.455917	NM_175035	ENSMUSG00000043505	Gimap5	D630024P16|E230026N22Rik	GTPase, IMAP family member 5	protein-coding	0.020000	0.527363	
mm_169205.1	chr13	66441060	66441260	-	1	NA	NA	NA	-42	NM_001290196	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.025000	0.527363	
mm_16431.1	chr2	180394205	180394405	+	1	NA	NA	NA	-4074	NR_029901	723954		NR_029901	ENSMUSG00000065460	Mir133a-2	Mirn133a-2|mir-133a-2	microRNA 133a-2	ncRNA	0.005000	0.497512	
mm_161966.1	chr19	8850443	8850643	+	1	NA	NA	NA	-242	NM_001013019	68852	Mm.265792	NM_001013019	ENSMUSG00000071656	Lrrn4cl	1110067I12Rik	LRRN4 C-terminal like	protein-coding	0.020000	0.522388	
mm_107041.1	chr12	14018551	14018751	+	1	NA	NA	NA	133387	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Fam84a	2310003N02Rik|4731402F03Rik|AW125753|Nse1	family with sequence similarity 84, member A	protein-coding	0.005000	0.442786	
mm_82148.1	chr9	123774705	123774905	+	1	NA	NA	NA	7594	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.005000	0.402985	
mm_127889.1	chr15	9140281	9140481	-	1	NA	NA	NA	73	NM_013787	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.080000	0.621891	
mm_72047.1	chr8	71330627	71330827	+	1	NA	NA	NA	-36121	NM_001145780	67023	Mm.41890	NM_025917	ENSMUSG00000002395	Use1	2010315L10Rik|5730403H22Rik|AV002165|D12|Ed2|Q-snare|p31	unconventional SNARE in the ER 1 homolog (S. cerevisiae)	protein-coding	0.020000	0.537313	
mm_162742.1	chr10	56389049	56389249	+	1	NA	NA	NA	11849	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.010000	0.407960	31(GTGTTTAAAAAC,-,0.00)
mm_25421.1	chr3	107873760	107873960	+	1	NA	NA	NA	-3370	NM_133867	99662	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0.020000	0.542289	
mm_142809.1	chr17	51084162	51084362	-	1	NA	NA	NA	75116	NM_001285993	72238	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.000000	0.368159	
mm_42253.1	chr5	114003722	114003922	+	1	NA	NA	NA	-62	NM_001286397	13142	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	0.010000	0.577114	
mm_82946.1	chr9	35546731	35546931	-	1	NA	NA	NA	11639	NM_013932	30959	Mm.291723	NM_013932	ENSMUSG00000032101	Ddx25	AW047046|GRTH	DEAD (Asp-Glu-Ala-Asp) box polypeptide 25	protein-coding	0.020000	0.497512	
mm_160079.1	chr7	12775570	12775770	-	1	NA	NA	NA	-12	NM_001017955	232875	Mm.333573	NM_001017955	ENSMUSG00000070822	Zscan18	EG232875	zinc finger and SCAN domain containing 18	protein-coding	0.000000	0.407960	
mm_40598.1	chr5	64264115	64264315	+	1	NA	NA	NA	33858	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.035000	0.492537	
mm_152175.1	chr19	7382342	7382542	-	1	NA	NA	NA	-561	NR_045703	654802	Mm.414924	NR_045703		1700105P06Rik	-	RIKEN cDNA 1700105P06 gene	ncRNA	0.085000	0.686567	
mm_95629.1	chr11	53631792	53631992	+	1	NA	NA	NA	2810	NM_008355	16163	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	0.015000	0.651741	
mm_125829.1	chr15	74957398	74957598	+	1	NA	NA	NA	2392	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.015000	0.487562	
mm_6162.1	chr1	65051136	65051336	-	1	NA	NA	NA	-73	NM_007777	12968	Mm.258170	NM_007777	ENSMUSG00000070870	Cryge	Cryg-2|Cryg-6|DGcry-2|Elo	crystallin, gamma E	protein-coding	0.025000	0.512438	
mm_54315.1	chr6	30174027	30174227	-	1	NA	NA	NA	-2	NR_126541	101447999		NR_126540		Mirc35hg	-	microRNA cluster 35, host gene	ncRNA	0.100000	0.701493	
mm_36652.1	chr4	94603116	94603316	-	1	NA	NA	NA	31	NM_172695	18786	Mm.490101	NM_172695	ENSMUSG00000028577	Plaa	2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3	phospholipase A2, activating protein	protein-coding	0.120000	0.701493	
mm_76302.1	chr8	84249617	84249817	-	1	NA	NA	NA	44	NM_001007571	101966	Mm.200723	NM_001007571	ENSMUSG00000019362	D8Ertd738e	AA589584	DNA segment, Chr 8, ERATO Doi 738, expressed	protein-coding	0.105000	0.636816	
mm_130723.1	chr15	101078719	101078919	-	1	NA	NA	NA	-24420	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.090000	0.716418	
mm_171927.1	chr5	61288600	61288800	-	1	NA	NA	NA	-520143	NM_019468	14380	Mm.347430	NM_019468	ENSMUSG00000089992	G6pd2	G6pdx-ps1|Gpd-2|Gpd2	glucose-6-phosphate dehydrogenase 2	protein-coding	0.040000	0.547264	
mm_48755.1	chr5	148329827	148330027	-	1	NA	NA	NA	62888	NM_001301424	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.005000	0.477612	
mm_8502.1	chr1	154080631	154080831	-	1	NA	NA	NA	-120456	NM_001204908	100503355	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	ENSMUSG00000066797|Gm10178|Gm203	zinc finger protein 648	protein-coding	0.015000	0.442786	
mm_19377.1	chr2	91194772	91194972	-	1	NA	NA	NA	163	NM_013839	22259	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0.040000	0.636816	
mm_98450.1	chr11	94944821	94945021	+	1	NA	NA	NA	8697	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.005000	0.497512	
mm_129941.1	chr15	84856026	84856226	-	1	NA	NA	NA	3	NM_001081166	271305	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.150000	0.751244	
mm_163089.1	chr11	69734587	69734787	-	1	NA	NA	NA	23946	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.010000	0.517413	
mm_34622.1	chr4	150566471	150566671	+	1	NA	NA	NA	85603	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.005000	0.452736	
mm_81232.1	chr9	107872880	107873080	+	1	NA	NA	NA	-161	NM_029169	19654	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	0.035000	0.601990	
mm_74427.1	chr8	3685220	3685420	-	1	NA	NA	NA	5070	NM_001253739	14128	Mm.1233	NM_013517	ENSMUSG00000005540	Fcer2a	CD23|Fce2|Fcer2|Ly-42	Fc receptor, IgE, low affinity II, alpha polypeptide	protein-coding	0.010000	0.393035	
mm_74042.1	chr8	121950655	121950855	+	1	NA	NA	NA	263	NM_001285983	53325	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	0.180000	0.825871	
mm_137125.1	chr17	22734742	22734942	+	1	NA	NA	NA	82905	NR_030709	100042679	Mm.484007	NR_030709		Gm16386	EG545191|ENSMUSG00000073442|Gm21017	zinc finger protein 946 pseudogene	pseudo	0.005000	0.452736	
mm_144340.1	chr18	14783149	14783349	+	1	NA	NA	NA	4	NM_001100449	72504	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	0.110000	0.661692	-36(GGCTATATAAAC,-,0.00)
mm_48220.1	chr5	137624946	137625146	-	1	NA	NA	NA	32	NM_027708	71176	Mm.474695	NM_027708	ENSMUSG00000089984	Fbxo24	4933422D21Rik|Fbx24	F-box protein 24	protein-coding	0.015000	0.651741	
mm_90910.1	chr10	11492076	11492276	-	1	NA	NA	NA	-117048	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.080000	0.631841	
mm_88737.1	chr10	80264888	80265088	+	1	NA	NA	NA	-3	NM_001122604	70248	Mm.148693	NM_133188	ENSMUSG00000069565	Dazap1	2410042M16Rik|mPrrp	DAZ associated protein 1	protein-coding	0.190000	0.825871	
mm_87488.1	chr10	51494552	51494752	+	1	NA	NA	NA	3754	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.010000	0.472637	
mm_20365.1	chr2	128382514	128382714	-	1	NA	NA	NA	46737	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.020000	0.487562	
mm_59379.1	chr7	25899479	25899679	+	1	NA	NA	NA	1921	NM_009999	13088	Mm.218749	NM_009999	ENSMUSG00000030483	Cyp2b10	Cyp2b|Cyp2b20|p16	cytochrome P450, family 2, subfamily b, polypeptide 10	protein-coding	0.010000	0.497512	
mm_168479.1	chr11	48992789	48992989	-	1	NA	NA	NA	-643	NM_011579	21822	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	0.005000	0.487562	
mm_159744.1	chr5	72736304	72736504	-	1	NA	NA	NA	198	NM_013698	22165	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.020000	0.527363	
mm_106888.1	chr12	8012060	8012260	+	1	NA	NA	NA	34483	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.427861	
mm_94064.1	chr10	128369060	128369260	-	1	NA	NA	NA	877	NM_001081040	210582	Mm.296876	NM_001081040	ENSMUSG00000039914	Coq10a	Gm1	coenzyme Q10A	protein-coding	0.080000	0.587065	
mm_82984.1	chr9	36493265	36493465	-	1	NA	NA	NA	17727	NM_001128510	671003	Mm.475847	NM_001128510	ENSMUSG00000090710	Gm9513	Pate-P|Pate11	predicted gene 9513	protein-coding	0.000000	0.457711	
mm_86372.1	chr9	123798026	123798226	-	1	NA	NA	NA	-8351	NM_030712	80901	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.020000	0.462687	
mm_6112.1	chr1	64120910	64121110	-	1	NA	NA	NA	379	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.030000	0.557214	
mm_43732.1	chr5	139791413	139791613	+	1	NA	NA	NA	-23	NM_010757	17135	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0.145000	0.686567	
mm_67892.1	chr7	99479605	99479805	-	1	NA	NA	NA	2	NR_002173	449631	Mm.236868	NR_002173	ENSMUSG00000064966	Snord15b	Gm5775|Rnu15-b|Rnu15b|U15B	small nucleolar RNA, C/D box 14B	snoRNA	0.015000	0.477612	
mm_87244.1	chr10	40936308	40936508	+	1	NA	NA	NA	52874	NM_031877	83767	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	0.025000	0.651741	
mm_10868.1	chr2	25214596	25214796	+	1	NA	NA	NA	-66	NM_028961	74472	Mm.176944	NM_028961	ENSMUSG00000036770	Stpg3	4933433C11Rik	sperm tail PG rich repeat containing 3	protein-coding	0.000000	0.592040	
mm_131306.1	chr16	11447210	11447410	+	1	NA	NA	NA	41662	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.015000	0.537313	
mm_97804.1	chr11	82956852	82957052	+	1	NA	NA	NA	3729	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.020000	0.432836	
mm_8099.1	chr1	135847998	135848198	-	1	NA	NA	NA	7237	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.025000	0.572139	
mm_7888.1	chr1	133133502	133133702	-	1	NA	NA	NA	2436	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.000000	0.432836	
mm_52931.1	chr6	122932131	122932331	+	1	NA	NA	NA	10383	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.010000	0.447761	
mm_38120.1	chr4	134548089	134548289	-	1	NA	NA	NA	3977	NM_029100	74777	Mm.29773	NM_029100	ENSMUSG00000050989	Selenon	1110019I12Rik|AI414492|SelN|Sepn1	selenoprotein N	protein-coding	0.030000	0.532338	
mm_154695.1	chrX	8131752	8131952	+	1	NA	NA	NA	1006	NM_001290783	73447	Mm.284162	NM_026137	ENSMUSG00000031166	Wdr13	1700060B08Rik|5730411P10Rik|DXHXS7467e|W51679|mMg21	WD repeat domain 13	protein-coding	0.015000	0.422886	
mm_16078.1	chr2	168231134	168231334	+	1	NA	NA	NA	612	NM_001160330	69372	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	0.165000	0.731343	
mm_23495.1	chr3	60516774	60516974	+	1	NA	NA	NA	15695	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.015000	0.353234	
mm_20190.1	chr2	122611128	122611328	-	1	NA	NA	NA	49	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.120000	0.711443	
mm_159735.1	chr5	64159927	64160127	+	1	NA	NA	NA	-233	NM_019636	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.075000	0.701493	
mm_104072.1	chr11	86586394	86586594	-	1	NA	NA	NA	-2336	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.045000	0.587065	-70(CCTTTTCAAGAG,+,0.00)
mm_90897.1	chr10	10474975	10475175	-	1	NA	NA	NA	-2761	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.005000	0.512438	-92(CTTTTTATAGAA,+,0.00)
mm_27671.1	chr3	65392487	65392687	-	1	NA	NA	NA	-34	NM_026155	67437	Mm.232728	NM_026155	ENSMUSG00000027828	Ssr3	0610038P07Rik|AL022999|AU022074|AW553833|TRAPG	signal sequence receptor, gamma	protein-coding	0.095000	0.661692	
mm_92317.1	chr10	75517243	75517443	-	1	NA	NA	NA	38	NM_175133	68778	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.105000	0.706468	
mm_119469.1	chr14	47292208	47292408	+	1	NA	NA	NA	-6006	NM_178684	218975	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	0.005000	0.378109	
mm_140413.1	chr17	87650340	87650540	+	1	NA	NA	NA	14461	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.030000	0.547264	
mm_25513.1	chr3	110250094	110250294	+	1	NA	NA	NA	805	NM_178891	99890	Mm.36115	NM_178891	ENSMUSG00000049300	Prmt6	AW124876|BB233495|Hrmt1l6	protein arginine N-methyltransferase 6	protein-coding	0.100000	0.686567	
mm_65437.1	chr7	25384867	25385067	-	1	NA	NA	NA	5145	NM_001039507	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.015000	0.587065	
mm_164394.1	chr16	33753233	33753433	+	1	NA	NA	NA	-40704	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.015000	0.507463	
mm_148129.1	chr18	75697340	75697540	-	1	NA	NA	NA	256	NM_201354	269037	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0.080000	0.686567	
mm_140444.1	chr17	88580281	88580481	+	1	NA	NA	NA	-46174	NM_029858	77057	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.035000	0.522388	
mm_55602.1	chr6	71823675	71823875	-	1	NA	NA	NA	9	NM_025430	66223	Mm.28579	NM_025430	ENSMUSG00000052962	Mrpl35	1110066C01Rik	mitochondrial ribosomal protein L35	protein-coding	0.050000	0.552239	
mm_78963.1	chr9	45246285	45246485	+	1	NA	NA	NA	20322	NR_106054	102466803		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.010000	0.537313	
mm_8164.1	chr1	136953449	136953649	-	1	NA	NA	NA	81	NM_001159769	26424	Mm.16794	NM_030676	ENSMUSG00000026398	Nr5a2	AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B	nuclear receptor subfamily 5, group A, member 2	protein-coding	0.020000	0.417910	
mm_12543.1	chr2	72364914	72365114	+	1	NA	NA	NA	79313	NM_178084	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.005000	0.313433	
mm_164785.1	chr18	8561937	8562137	-	1	NA	NA	NA	-650819	NM_008058	14370	Mm.184289	NM_008058	ENSMUSG00000036904	Fzd8	Fz8	frizzled class receptor 8	protein-coding	0.000000	0.318408	
mm_42602.1	chr5	117510147	117510347	+	1	NA	NA	NA	96245	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.035000	0.626866	
mm_29236.1	chr3	107214663	107214863	-	1	NA	NA	NA	6969	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.527363	
mm_47815.1	chr5	134221580	134221780	-	1	NA	NA	NA	7945	NM_001286037	17969	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.030000	0.512438	
mm_57310.1	chr6	124722902	124723102	-	1	NA	NA	NA	-4612	NR_029792	723944		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0.010000	0.407960	
mm_162712.1	chr10	28697514	28697714	+	1	NA	NA	NA	29254	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.000000	0.358209	
mm_63089.1	chr7	122301173	122301373	+	1	NA	NA	NA	12148	NM_008855	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.015000	0.472637	
mm_114494.1	chr13	69957894	69958094	+	1	NA	NA	NA	-1839	NR_138559	67550	Mm.158159	NR_138559		4933416O17Rik	-	RIKEN cDNA 4933416O17 gene	ncRNA	0.010000	0.492537	
mm_12972.1	chr2	90745471	90745671	+	1	NA	NA	NA	201	NM_018828	55935	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0.120000	0.661692	
mm_35688.1	chr4	44072445	44072645	-	1	NA	NA	NA	128	NM_001190414	50798	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	0.110000	0.721393	
mm_83640.1	chr9	49504049	49504249	-	1	NA	NA	NA	-14139	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.005000	0.407960	
mm_18446.1	chr2	60916389	60916589	-	1	NA	NA	NA	-35051	NM_001141931	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.010000	0.477612	
mm_26681.1	chr3	155514394	155514594	+	1	NA	NA	NA	421060	NM_028938	74435	Mm.195711	NM_028938	ENSMUSG00000028182	Lrriq3	4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44	leucine-rich repeats and IQ motif containing 3	protein-coding	0.010000	0.507463	-59(CCATAAAGAGTC,+,0.00)
mm_54535.1	chr6	36715577	36715777	-	1	NA	NA	NA	95684	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.015000	0.388060	31(CCATTTATACCT,+,0.00)
mm_122884.1	chr14	54946393	54946593	-	1	NA	NA	NA	2649	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.040000	0.592040	
mm_106368.1	chr11	118396731	118396931	-	1	NA	NA	NA	5100	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.015000	0.562189	
mm_130509.1	chr15	98845687	98845887	-	1	NA	NA	NA	-14279	NM_016781	19082	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.005000	0.636816	
mm_137645.1	chr17	28532086	28532286	+	1	NA	NA	NA	1325	NM_026290	67645	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.050000	0.636816	
mm_37340.1	chr4	119657556	119657756	-	1	NA	NA	NA	1289	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.010000	0.577114	
mm_2956.1	chr1	132729248	132729448	+	1	NA	NA	NA	-5	NR_045892	100038653	Mm.421275	NR_045892	ENSMUSG00000101126	Gm10538	ENSMUSG00000073566	predicted gene 10538	ncRNA	0.015000	0.452736	25(TCATCTAAAAGC,-,0.00)
mm_87873.1	chr10	61482036	61482236	+	1	NA	NA	NA	6303	NM_153542	216011	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0.005000	0.562189	
mm_94107.1	chr10	128589532	128589732	-	1	NA	NA	NA	-131	NM_010153	13867	Mm.373043	NM_010153	ENSMUSG00000018166	Erbb3	C76256|Erbb-3|Erbb3r|Her3	erb-b2 receptor tyrosine kinase 3	protein-coding	0.070000	0.676617	
mm_122312.1	chr14	36911337	36911537	-	1	NA	NA	NA	8098	NM_001347503	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.010000	0.427861	15(GACTATTAATGG,-,0.00),17(CTATTAATGGCC,+,0.00)
mm_9528.1	chr1	173787132	173787332	-	1	NA	NA	NA	-20313	NM_008329	15951	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.005000	0.258706	
mm_75410.1	chr8	46471511	46471711	-	1	NA	NA	NA	574	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.105000	0.706468	
mm_107830.1	chr12	69228537	69228737	+	1	NA	NA	NA	-447	NM_011133	18974	Mm.9199	NM_011133	ENSMUSG00000020974	Pole2	-	polymerase (DNA directed), epsilon 2 (p59 subunit)	protein-coding	0.025000	0.422886	22(GATTATAAATGG,-,0.00)
mm_155877.1	chrX	101448965	101449165	+	1	NA	NA	NA	-44	NM_013712	26549	Mm.46232	NM_013712	ENSMUSG00000031312	Itgb1bp2	Chordc3	integrin beta 1 binding protein 2	protein-coding	0.005000	0.517413	
mm_74102.1	chr8	122775406	122775606	+	1	NA	NA	NA	20	NM_144932	257633	Mm.334875	NM_144932	ENSMUSG00000015016	Acsf3	BB101783	acyl-CoA synthetase family member 3	protein-coding	0.090000	0.621891	
mm_50965.1	chr6	59408661	59408861	+	1	NA	NA	NA	17529	NM_183183	243385	Mm.138080	NM_183183	ENSMUSG00000045441	Gprin3	C030038J10Rik|C730021L23	GPRIN family member 3	protein-coding	0.015000	0.427861	
mm_172245.1	chr6	69284273	69284473	-	1	NA	NA	NA	42801	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.363184	-92(GTGTTTATAAGC,-,0.00)
mm_150870.1	chr19	45047759	45047959	+	1	NA	NA	NA	283	NM_001178013	94280	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.055000	0.621891	
mm_92959.1	chr10	85916984	85917184	-	1	NA	NA	NA	-98	NM_001302886	72843	Mm.25307	NM_181650	ENSMUSG00000035529	Prdm4	1700031E19Rik|2810470D21Rik|AW552272|SC-1|SC1	PR domain containing 4	protein-coding	0.095000	0.686567	
mm_87210.1	chr10	39736753	39736953	+	1	NA	NA	NA	4693	NM_011264	19714	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	0.005000	0.258706	
mm_21824.1	chr2	165326361	165326561	-	1	NA	NA	NA	18	NM_080287	140579	Mm.35064	NM_080287	ENSMUSG00000017670	Elmo2	1190002F24Rik|CED-12	engulfment and cell motility 2	protein-coding	0.100000	0.701493	
mm_104769.1	chr11	98545681	98545881	-	1	NA	NA	NA	250	NM_011771	22780	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.160000	0.776119	
mm_87260.1	chr10	41519801	41520001	+	1	NA	NA	NA	401	NM_016898	53599	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.130000	0.681592	
mm_104957.1	chr11	100141584	100141784	-	1	NA	NA	NA	2015	NM_001313963	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.015000	0.557214	
mm_103476.1	chr11	76494531	76494731	-	1	NA	NA	NA	-136	NM_001346670	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.085000	0.696517	
mm_95545.1	chr11	52306688	52306888	+	1	NA	NA	NA	-23774	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.000000	0.502488	
mm_78161.1	chr9	21027976	21028176	+	1	NA	NA	NA	-1297	NM_023892	78369	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.020000	0.572139	
mm_60399.1	chr7	44475505	44475705	+	1	NA	NA	NA	5258	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.547264	
mm_98326.1	chr11	90276849	90277049	+	1	NA	NA	NA	27473	NM_026178	67468	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.030000	0.427861	69(AAGTATAAAAGC,-,0.00)
mm_25133.1	chr3	102332127	102332327	+	1	NA	NA	NA	69822	NR_040391	319951	Mm.225196	NR_040391	ENSMUSG00000105891	A230001M10Rik	-	RIKEN cDNA A230001M10 gene	ncRNA	0.005000	0.572139	
mm_81550.1	chr9	110329073	110329273	+	1	NA	NA	NA	-4115	NM_001103162	235623	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0.005000	0.512438	
mm_97035.1	chr11	72267171	72267371	+	1	NA	NA	NA	427	NR_045922	73366	Mm.396157	NR_045922	ENSMUSG00000086951	1700051A21Rik	-	RIKEN cDNA 1700051A21 gene	ncRNA	0.100000	0.636816	
mm_105329.1	chr11	102924958	102925158	-	1	NA	NA	NA	66	NM_197959	70218	Mm.32084	NM_197959	ENSMUSG00000051378	Kif18b	3000004C01Rik	kinesin family member 18B	protein-coding	0.120000	0.656716	
mm_98929.1	chr11	98355226	98355426	+	1	NA	NA	NA	2957	NR_045477	69338	Mm.398308	NR_045477	ENSMUSG00000085944	1700003D09Rik	-	RIKEN cDNA 1700003D09 gene	ncRNA	0.020000	0.621891	
mm_83199.1	chr9	41157596	41157796	-	1	NA	NA	NA	-202	NM_176860	72828	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0.070000	0.636816	
mm_72033.1	chr8	70776668	70776868	+	1	NA	NA	NA	-56	NM_008841	18709	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)	protein-coding	0.120000	0.721393	
mm_39492.1	chr5	20950940	20951140	+	1	NA	NA	NA	51	NR_030699	320770	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.080000	0.542289	-33(ATCTTTAAAAGA,-,0.00),-32(TCTTTAAAAGAC,+,0.00)
mm_153896.1	chr19	47015060	47015260	-	1	NA	NA	NA	29	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.185000	0.746269	
mm_130057.1	chr15	89180634	89180834	-	1	NA	NA	NA	54	NM_001284506	140570	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.140000	0.776119	
mm_52826.1	chr6	121357432	121357632	+	1	NA	NA	NA	10835	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.015000	0.512438	
mm_4038.1	chr1	165774319	165774519	+	1	NA	NA	NA	10639	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.020000	0.432836	
mm_18940.1	chr2	76759934	76760134	-	1	NA	NA	NA	84719	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.035000	0.477612	
mm_49778.1	chr6	34920848	34921048	+	1	NA	NA	NA	-12	NM_009292	20899	Mm.5171	NM_009292	ENSMUSG00000029848	Stra8	-	stimulated by retinoic acid gene 8	protein-coding	0.045000	0.562189	
mm_114104.1	chr13	54731941	54732141	+	1	NA	NA	NA	17833	NM_001316710	26913	Mm.41812	NM_012014	ENSMUSG00000069227	Gprin1	GRIN1|Z16	G protein-regulated inducer of neurite outgrowth 1	protein-coding	0.010000	0.427861	
mm_20033.1	chr2	119743083	119743283	-	1	NA	NA	NA	846	NM_146125	228550	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	0.090000	0.686567	
mm_109702.1	chr12	113260066	113260266	+	1	NA	NA	NA	74263	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.035000	0.507463	
mm_44866.1	chr5	34336782	34336982	-	1	NA	NA	NA	-50	NM_001304270	19822	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0.090000	0.651741	
mm_127052.1	chr15	96709811	96710011	+	1	NA	NA	NA	-10213	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.105000	0.671642	
mm_114356.1	chr13	60940130	60940330	+	1	NA	NA	NA	1705	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding	0.015000	0.407960	19(GCTTTTATGAGA,+,0.00)
mm_5398.1	chr1	33669669	33669869	-	1	NA	NA	NA	25	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	0.085000	0.621891	
mm_14468.1	chr2	131287223	131287423	+	1	NA	NA	NA	-729	NR_029755	723825		NR_029755	ENSMUSG00000065563	Mir103-2	Mirn103-2|mir-103-2	microRNA 103-2	ncRNA	0.000000	0.328358	
mm_90571.1	chr10	128231983	128232183	+	1	NA	NA	NA	20	NM_001136082	21853	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0.100000	0.706468	
mm_162485.1	chr1	135167493	135167693	-	1	NA	NA	NA	88	NM_134438	171469	Mm.272290	NM_134438	ENSMUSG00000026424	Gpr37l1	AW047233|CAG-18|D0Kist8	G protein-coupled receptor 37-like 1	protein-coding	0.025000	0.636816	
mm_107796.1	chr12	62718644	62718844	+	1	NA	NA	NA	30957	NR_131949	73309	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0.005000	0.338308	
mm_91702.1	chr10	44004371	44004571	-	1	NA	NA	NA	375	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.045000	0.616915	
mm_114220.1	chr13	56438213	56438413	+	1	NA	NA	NA	-42	NM_177809	328258	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	0.060000	0.597015	-40(GTGCCTTTAAGG,-,0.00),-38(GCCTTTAAGGTC,+,0.00)
mm_31535.1	chr4	55366716	55366916	+	1	NA	NA	NA	16774	NM_009011	19359	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	0.005000	0.298507	
mm_82349.1	chr9	13826891	13827091	-	1	NA	NA	NA	62	NR_037622	74360	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding	0.105000	0.661692	
mm_110481.1	chr12	51866310	51866510	-	1	NA	NA	NA	-36874	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.020000	0.512438	-33(CACTATAAAAAG,-,0.00)
mm_115302.1	chr13	112182410	112182610	+	1	NA	NA	NA	-105941	NM_001168403	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.035000	0.537313	
mm_61097.1	chr7	51878953	51879153	+	1	NA	NA	NA	86	NM_001330607	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.035000	0.532338	
mm_21571.1	chr2	164236936	164237136	-	1	NA	NA	NA	1305	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.025000	0.417910	53(TCCTATAAAGGA,-,0.00)
mm_39672.1	chr5	25510767	25510967	+	1	NA	NA	NA	-5200	NM_198621	242891	Mm.291521	NM_198621	ENSMUSG00000038044	Cct8l1	Gm443	chaperonin containing TCP1, subunit 8 (theta)-like 1	protein-coding	0.000000	0.293532	
mm_140697.1	chr17	14203637	14203837	-	1	NA	NA	NA	94	NM_172826	240025	Mm.79993	NM_172826	ENSMUSG00000048826	Dact2	2900084M21Rik|A630024E20|Dpr2|Frd2|dapper2	dishevelled-binding antagonist of beta-catenin 2	protein-coding	0.150000	0.766169	
mm_48448.1	chr5	140701929	140702129	-	1	NA	NA	NA	349	NM_028833	74239	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	0.115000	0.701493	
mm_148302.1	chr18	82798675	82798875	-	1	NA	NA	NA	-39736	NR_045389	76961	Mm.396392	NR_045389	ENSMUSG00000101773	2210420H20Rik	-	RIKEN cDNA 2210420H20 gene	ncRNA	0.035000	0.562189	
mm_95257.1	chr11	44649967	44650167	+	1	NA	NA	NA	31967	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.000000	0.368159	
mm_9735.1	chr1	180235612	180235812	-	1	NA	NA	NA	10238	NM_011183	19165	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.005000	0.398010	
mm_153498.1	chr19	41332346	41332546	-	1	NA	NA	NA	52624	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.025000	0.497512	
mm_119442.1	chr14	46832006	46832206	+	1	NA	NA	NA	-138	NM_026832	68755	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	0.055000	0.616915	
mm_117796.1	chr13	97198257	97198457	-	1	NA	NA	NA	0	NM_010422	15212	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.080000	0.661692	
mm_88951.1	chr10	81364246	81364446	+	1	NA	NA	NA	1474	NM_001014836	432479	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.050000	0.582090	
mm_73099.1	chr8	94568268	94568468	+	1	NA	NA	NA	33358	NM_028221	102122	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	0.020000	0.552239	
mm_6075.1	chr1	61851372	61851572	-	1	NA	NA	NA	212648	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0.015000	0.452736	-36(CCTTTTATAAGA,+,0.00)
mm_110024.1	chr12	16790109	16790309	-	1	NA	NA	NA	10677	NM_015764	268527	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	0.000000	0.293532	
mm_68050.1	chr7	101550691	101550891	-	1	NA	NA	NA	5011	NM_007490	11871	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0.005000	0.462687	-49(GGCCTTTAAAAC,-,0.00),-47(CCTTTAAAACTC,+,0.00)
mm_103352.1	chr11	74831699	74831899	-	1	NA	NA	NA	875	NM_010813	17428	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.055000	0.582090	
mm_5984.1	chr1	58422747	58422947	-	1	NA	NA	NA	1241	NR_027853	12747	Mm.1761	NM_009905	ENSMUSG00000026034	Clk1	STY	CDC-like kinase 1	protein-coding	0.020000	0.402985	
mm_133948.1	chr16	3976400	3976600	-	1	NA	NA	NA	132	NM_175547	268857	Mm.215994	NM_175547	ENSMUSG00000049871	Nlrc3	CLR16.2|D230007K08Rik|mFLJ00348	NLR family, CARD domain containing 3	protein-coding	0.010000	0.562189	
mm_169770.1	chr15	99875355	99875555	-	1	NA	NA	NA	1	NM_001113545	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.145000	0.761194	
mm_38432.1	chr4	139352206	139352406	-	1	NA	NA	NA	270	NM_001290810	69902	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	0.115000	0.706468	
mm_67999.1	chr7	100931408	100931608	-	1	NA	NA	NA	653	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.155000	0.796020	
mm_109686.1	chr12	113141407	113141607	+	1	NA	NA	NA	902	NM_001347443	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.005000	0.522388	
mm_104799.1	chr11	98773938	98774138	-	1	NA	NA	NA	1339	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.075000	0.636816	
mm_107364.1	chr12	32848519	32848719	+	1	NA	NA	NA	24503	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.010000	0.407960	
mm_22585.1	chr3	13471653	13471853	+	1	NA	NA	NA	98	NM_001163328	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.130000	0.751244	
mm_105895.1	chr11	114982442	114982642	-	1	NA	NA	NA	7344	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.000000	0.452736	
mm_21825.1	chr2	165368608	165368808	-	1	NA	NA	NA	-6589	NM_001005425	381405	Mm.296323	NM_001005425	ENSMUSG00000056824	Zfp663	Gm1008	zinc finger protein 663	protein-coding	0.070000	0.611940	
mm_25886.1	chr3	130874075	130874275	+	1	NA	NA	NA	-143777	NM_001005859	68436	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.020000	0.522388	
mm_135816.1	chr16	57754616	57754816	-	1	NA	NA	NA	21	NM_007739	12837	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0.050000	0.621891	-34(GTCCATAAAAGC,-,0.00)
mm_39854.1	chr5	30921437	30921637	+	1	NA	NA	NA	-22	NM_001310525	16548	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0.090000	0.686567	
mm_17400.1	chr2	27205396	27205596	-	1	NA	NA	NA	39989	NM_138942	13166	Mm.167781	NM_138942	ENSMUSG00000000889	Dbh	-	dopamine beta hydroxylase	protein-coding	0.010000	0.497512	
mm_100882.1	chr11	6003085	6003285	-	1	NA	NA	NA	47427	NM_019661	56418	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0.005000	0.572139	
mm_108049.1	chr12	73908278	73908478	+	1	NA	NA	NA	511	NM_001313919	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.125000	0.656716	
mm_45261.1	chr5	63968758	63968958	-	1	NA	NA	NA	39	NM_145923	100532	Mm.243632	NM_145923	ENSMUSG00000047881	Rell1	AA536743	RELT-like 1	protein-coding	0.125000	0.761194	
mm_115856.1	chr13	21291250	21291450	-	1	NA	NA	NA	1336	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.015000	0.417910	-67(GTCTCTTAATGG,-,0.00)
mm_48726.1	chr5	147400265	147400465	-	1	NA	NA	NA	124	NM_010229	14255	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	0.105000	0.721393	
mm_69848.1	chr7	141414023	141414223	-	1	NA	NA	NA	2	NM_172116	213350	Mm.290953	NM_172116	ENSMUSG00000051007	Pddc1	BC023835|D230016J19Rik	Parkinson disease 7 domain containing 1	protein-coding	0.090000	0.671642	
mm_15278.1	chr2	155249886	155250086	+	1	NA	NA	NA	13378	NM_001291108	67068	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	0.005000	0.412935	
mm_142355.1	chr17	43630592	43630792	-	1	NA	NA	NA	-393	NM_001161367	210510	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	0.055000	0.587065	
mm_132784.1	chr16	44943606	44943806	+	1	NA	NA	NA	28	NM_001128132	74603	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0.010000	0.457711	
mm_136833.1	chr17	12744596	12744796	+	1	NA	NA	NA	3385	NR_027784	104103	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.010000	0.462687	
mm_142056.1	chr17	35667237	35667437	-	1	NA	NA	NA	255	NM_175137	68915	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	0.055000	0.611940	
mm_99211.1	chr11	101023183	101023383	+	1	NA	NA	NA	-7057	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.010000	0.313433	
mm_41034.1	chr5	86071522	86071722	+	1	NA	NA	NA	-124	NM_019992	56792	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.005000	0.427861	-34(GCCTTTTAAAAG,-,0.00),-33(CCTTTTAAAAGT,+,0.00)
mm_135813.1	chr16	57606704	57606904	-	1	NA	NA	NA	63	NM_025599	66497	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	0.115000	0.651741	
mm_146834.1	chr18	22828419	22828619	-	1	NA	NA	NA	210144	NM_001161483	319211	Mm.209896	NM_199024	ENSMUSG00000041923	Nol4	1700013J13Rik|4930568N03Rik|Gm1262	nucleolar protein 4	protein-coding	0.005000	0.452736	
mm_150795.1	chr19	44303350	44303550	+	1	NA	NA	NA	279	NR_039574	100628619		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.030000	0.487562	
mm_121628.1	chr14	8317770	8317970	-	1	NA	NA	NA	-8094	NM_183187	268709	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0.020000	0.572139	
mm_142205.1	chr17	36981128	36981328	-	1	NA	NA	NA	9	NM_029747	76797	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding	0.035000	0.512438	-32(CCATTTATAGCT,+,0.00)
mm_31186.1	chr4	43555593	43555793	+	1	NA	NA	NA	6890	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.020000	0.477612	
mm_87366.1	chr10	43947787	43947987	+	1	NA	NA	NA	46080	NM_130892	170728	Mm.390253	NM_130892	ENSMUSG00000019864	Rtn4ip1	D10Ertd690e|NIMP	reticulon 4 interacting protein 1	protein-coding	0.005000	0.442786	
mm_156935.1	chrX	169879665	169879865	+	1	NA	NA	NA	146	NM_001290505	17318	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	0.050000	0.517413	
mm_136180.1	chr16	88877936	88878136	-	1	NA	NA	NA	2	NM_130857	77918	Mm.28425	NM_130857	ENSMUSG00000060469	Krtap19-3	A030006N06Rik|Krtap16-5	keratin associated protein 19-3	protein-coding	0.010000	0.462687	-34(GAGTATATAAGC,-,0.00)
mm_17383.1	chr2	27024210	27024410	-	1	NA	NA	NA	3688	NM_172659	227659	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.040000	0.592040	
mm_25284.1	chr3	105687660	105687860	+	1	NA	NA	NA	-189	NM_017397	53975	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	0.140000	0.756219	
mm_19645.1	chr2	102861602	102861802	-	1	NA	NA	NA	39963	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.025000	0.422886	
mm_156092.1	chrX	111894857	111895057	+	1	NA	NA	NA	-197878	NM_001290459	245596	Mm.246623	NM_001080549	ENSMUSG00000034551	Hdx	D030011N01Rik|Gm380	highly divergent homeobox	protein-coding	0.180000	0.820896	
mm_28937.1	chr3	98882136	98882336	-	1	NA	NA	NA	10994	NM_019545	56185	Mm.281874	NM_019545	ENSMUSG00000027870	Hao2	AI325478|Hao-2|Hao3|Haox3	hydroxyacid oxidase 2	protein-coding	0.010000	0.487562	
mm_1132.1	chr1	60409607	60409807	+	1	NA	NA	NA	88	NM_001198570	329165	Mm.212066	NM_198127	ENSMUSG00000026782	Abi2	8430425M24Rik|AI839867|C130078H13	abl-interactor 2	protein-coding	0.110000	0.711443	
mm_49933.1	chr6	39442174	39442374	+	1	NA	NA	NA	-21905	NM_018810	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.005000	0.502488	-35(TACTATAAAAGG,-,0.00)
mm_83733.1	chr9	51056980	51057180	-	1	NA	NA	NA	20014	NM_001033534	244864	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0.000000	0.552239	
mm_142937.1	chr17	56005800	56006000	-	1	NA	NA	NA	-294	NR_102313	106766	Mm.204991	NM_145934	ENSMUSG00000038781	Stap2	AW049765|STAP-2	signal transducing adaptor family member 2	protein-coding	0.030000	0.472637	
mm_155623.1	chrX	83592034	83592234	+	1	NA	NA	NA	-104210	NM_021898	100502723	Mm.383210	NM_021898	ENSMUSG00000035522	Tsga8	Halap-X|Halapx	testis specific gene A8	protein-coding	0.005000	0.417910	
mm_100098.1	chr11	115628314	115628514	+	1	NA	NA	NA	-119	NM_001252395	67283	Mm.383426	NM_026071	ENSMUSG00000020744	Slc25a19	2900089E13Rik|DNC|MUP1|TPC	solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19	protein-coding	0.070000	0.487562	
mm_152427.1	chr19	10676604	10676804	-	1	NA	NA	NA	1367	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.055000	0.527363	
mm_14607.1	chr2	136502152	136502352	+	1	NA	NA	NA	-30069	NM_175667	319196	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0.020000	0.517413	
mm_116652.1	chr13	49187845	49188045	-	1	NA	NA	NA	398	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.075000	0.691542	
mm_49335.1	chr6	21307774	21307974	+	1	NA	NA	NA	91765	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.005000	0.368159	
mm_68608.1	chr7	116308248	116308448	-	1	NA	NA	NA	28	NM_001305185	233765	Mm.3741	NM_172743	ENSMUSG00000045659	Plekha7	A430081P20Rik|AI414265	pleckstrin homology domain containing, family A member 7	protein-coding	0.080000	0.681592	
mm_117196.1	chr13	63701848	63702048	-	1	NA	NA	NA	32350	NR_126476	75522	Mm.54259	NR_126476		1700024I08Rik	-	RIKEN cDNA 1700024I08 gene	ncRNA	0.005000	0.492537	-48(GTTTATAAAGTC,+,0.00)
mm_85881.1	chr9	111001794	111001994	-	1	NA	NA	NA	-12181	NM_153100	235636	Mm.441138	NM_153100	ENSMUSG00000066319	Rtp3	Tmem7	receptor transporter protein 3	protein-coding	0.035000	0.532338	
mm_59972.1	chr7	30457389	30457589	+	1	NA	NA	NA	26	NM_172898	243911	Mm.113908	NM_172898	ENSMUSG00000036915	Kirrel2	C330019F22Rik|NEPH3|NLG1	kin of IRRE like 2 (Drosophila)	protein-coding	0.040000	0.606965	-64(AGCTATAAATGG,-,0.00)
mm_84481.1	chr9	66844276	66844476	-	1	NA	NA	NA	-9670	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.000000	0.308458	
mm_141833.1	chr17	34628289	34628489	-	1	NA	NA	NA	-110	NM_001302393	54397	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	0.020000	0.442786	
mm_41841.1	chr5	104434218	104434418	+	1	NA	NA	NA	-793	NM_001204201	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.015000	0.502488	-29(TGCTCTATATGG,-,0.00),-27(CTCTATATGGCC,+,0.00)
mm_72819.1	chr8	88137773	88137973	+	1	NA	NA	NA	-12	NM_172757	234549	Mm.36291	NM_172757	ENSMUSG00000031657	Heatr3	C030036P15Rik	HEAT repeat containing 3	protein-coding	0.085000	0.661692	
mm_28780.1	chr3	95990752	95990952	-	1	NA	NA	NA	4987	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.025000	0.547264	
mm_113656.1	chr13	42680695	42680895	+	1	NA	NA	NA	-4	NM_001302635	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.030000	0.537313	
mm_32130.1	chr4	99037795	99037995	+	1	NA	NA	NA	6941	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.000000	0.412935	
mm_25012.1	chr3	97930180	97930380	+	1	NA	NA	NA	107	NM_001033779	433632	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.015000	0.407960	
mm_55122.1	chr6	50456258	50456458	-	1	NA	NA	NA	-4	NM_001347213	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.045000	0.577114	
mm_43699.1	chr5	139217656	139217856	+	1	NA	NA	NA	2598	NM_001256116	77053	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0.005000	0.388060	15(GCCTATAGAGAG,+,0.00)
mm_94254.1	chr11	3330854	3331054	+	1	NA	NA	NA	223	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.020000	0.517413	
mm_3008.1	chr1	133352420	133352620	+	1	NA	NA	NA	1846	NM_031192	19701	Mm.220955	NM_031192	ENSMUSG00000070645	Ren1	D19352|Ren|Ren-1|Ren-A|Ren1c|Ren1d|Rn-1|Rnr	renin 1 structural	protein-coding	0.020000	0.522388	
mm_43184.1	chr5	128596814	128597014	+	1	NA	NA	NA	3773	NR_015517	319616	Mm.387738	NR_015517	ENSMUSG00000072591	5930412G12Rik	-	RIKEN cDNA 5930412G12 gene	ncRNA	0.025000	0.507463	
mm_90340.1	chr10	127092578	127092778	+	1	NA	NA	NA	13771	NM_001033263	216439	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.035000	0.646766	
mm_109650.1	chr12	112860979	112861179	+	1	NA	NA	NA	-163	NM_019925	56696	Mm.20455	NM_019925	ENSMUSG00000021298	Gpr132	G2a	G protein-coupled receptor 132	protein-coding	0.035000	0.547264	
mm_29600.1	chr3	120886637	120886837	-	1	NA	NA	NA	-5	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA	0.035000	0.527363	-2(TCTTTTAAGCTC,+,0.00)
mm_77388.1	chr8	120177328	120177528	-	1	NA	NA	NA	41	NM_001033980	436062	Mm.334852	NM_001033980	ENSMUSG00000042269	Fam92b	1700120B06Rik	family with sequence similarity 92, member B	protein-coding	0.005000	0.621891	
mm_127356.1	chr15	100619944	100620144	+	1	NA	NA	NA	4382	NM_011873	23994	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0.005000	0.542289	
mm_99266.1	chr11	101246287	101246487	+	1	NA	NA	NA	53	NM_019444	54409	Mm.260698	NM_019444	ENSMUSG00000001240	Ramp2	-	receptor (calcitonin) activity modifying protein 2	protein-coding	0.115000	0.766169	
mm_62143.1	chr7	97101260	97101460	+	1	NA	NA	NA	19609	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.005000	0.318408	
mm_11737.1	chr2	37776144	37776344	+	1	NA	NA	NA	-5	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.070000	0.746269	
mm_132034.1	chr16	27410979	27411179	+	1	NA	NA	NA	22123	NM_001289436	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.005000	0.273632	
mm_93806.1	chr10	120899001	120899201	-	1	NA	NA	NA	-130	NM_177092	320183	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	0.140000	0.756219	
mm_71928.1	chr8	70270153	70270353	+	1	NA	NA	NA	-12746	NM_011984	26558	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	0.010000	0.472637	-69(CCTTTAATATAA,+,0.00)
mm_58918.1	chr7	17714959	17715159	+	1	NA	NA	NA	1807	NM_028480	73250	Mm.244138	NM_028480	ENSMUSG00000008789	Ceacam5	1600029H12Rik|Psg30	carcinoembryonic antigen-related cell adhesion molecule 5	protein-coding	0.010000	0.412935	
mm_147799.1	chr18	61657922	61658122	-	1	NA	NA	NA	7516	NR_045402	328968	Mm.392305	NR_045402		Carmn	Carmen|E330013P06|Gm16908|Mir143hg	cardiac mesoderm enhancer-associated non-coding RNA	ncRNA	0.000000	0.512438	
mm_83114.1	chr9	40376335	40376535	-	1	NA	NA	NA	42963	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.030000	0.572139	-62(GTCTTTAAATGG,-,0.00),-60(CTTTAAATGGGC,+,0.00)
mm_164832.1	chr18	37873155	37873355	+	1	NA	NA	NA	-18595	NR_105945	102465592		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.015000	0.457711	
mm_41330.1	chr5	90491604	90491804	+	1	NA	NA	NA	990	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.035000	0.452736	
mm_39571.1	chr5	23433058	23433258	+	1	NA	NA	NA	1195	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.090000	0.671642	
mm_374.1	chr1	34005831	34006031	+	1	NA	NA	NA	-5894	NM_133833	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.020000	0.502488	
mm_140803.1	chr17	22081094	22081294	-	1	NA	NA	NA	84783	NM_177596	210853	Mm.441622	NM_177596	ENSMUSG00000063383	Zfp947	6720451E15|EG210853|Gm4769	zinc finger protein 947	protein-coding	0.115000	0.731343	
mm_12696.1	chr2	76406487	76406687	+	1	NA	NA	NA	79	NM_001290733	99031	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding	0.150000	0.786070	
mm_122282.1	chr14	34502589	34502789	-	1	NA	NA	NA	-143	NM_009758	12166	Mm.237825	NM_009758	ENSMUSG00000021796	Bmpr1a	1110037I22Rik|ALK3|AU045487|BMPR-IA|Bmpr	bone morphogenetic protein receptor, type 1A	protein-coding	0.140000	0.776119	
mm_114815.1	chr13	91606347	91606547	+	1	NA	NA	NA	-135074	NM_028790	74156	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0.010000	0.378109	
mm_17866.1	chr2	34861950	34862150	-	1	NA	NA	NA	8912	NM_080554	66998	Mm.270632	NM_080554	ENSMUSG00000026869	Psmd5	1500032A03Rik|AW475925|S5b|W91691|mKIAA0072	proteasome (prosome, macropain) 26S subunit, non-ATPase, 5	protein-coding	0.005000	0.427861	
mm_77953.1	chr9	7561551	7561751	+	1	NA	NA	NA	3222	NM_008611	17394	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	0.005000	0.427861	
mm_95676.1	chr11	54101152	54101352	+	1	NA	NA	NA	328	NM_011031	18452	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.105000	0.736318	
mm_144192.1	chr18	7869617	7869817	+	1	NA	NA	NA	520	NM_153085	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.160000	0.751244	
mm_82649.1	chr9	22018580	22018780	-	1	NA	NA	NA	15692	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.065000	0.582090	
mm_7525.1	chr1	124202583	124202783	-	1	NA	NA	NA	-157124	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.010000	0.398010	
mm_102737.1	chr11	67250875	67251075	-	1	NA	NA	NA	13163	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.005000	0.442786	-97(GCTTATAGGCAG,+,0.00)
mm_73139.1	chr8	94977234	94977434	+	1	NA	NA	NA	225	NM_001198894	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.035000	0.597015	
mm_41660.1	chr5	98854737	98854937	+	1	NA	NA	NA	422	NM_001310677	110075	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0.105000	0.721393	
mm_166683.1	chr6	99618802	99619002	-	1	NA	NA	NA	47869	NM_025829	66892	Mm.32889	NM_025829	ENSMUSG00000093661	Eif4e3	1300018P11Rik|AI451927|eIF4E-3	eukaryotic translation initiation factor 4E member 3	protein-coding	0.000000	0.407960	
mm_167670.1	chr9	74714191	74714391	+	1	NA	NA	NA	-134146	NR_045284	100503019	Mm.482658	NR_045284	ENSMUSG00000066477	Gm16551	-	predicted gene 16551	ncRNA	0.000000	0.393035	
mm_75334.1	chr8	43305743	43305943	-	1	NA	NA	NA	1166	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.045000	0.572139	
mm_136574.1	chr17	3462925	3463125	+	1	NA	NA	NA	-19290	NM_001286758	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.020000	0.547264	
mm_89665.1	chr10	97483398	97483598	+	1	NA	NA	NA	1167	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.010000	0.482587	
mm_149815.1	chr19	23904480	23904680	+	1	NA	NA	NA	126439	NM_001114174	381217	Mm.426078	NM_001114174	ENSMUSG00000071604	Fam189a2	AI414343|AI666772|Gm967	family with sequence similarity 189, member A2	protein-coding	0.025000	0.567164	
mm_98746.1	chr11	96487444	96487644	+	1	NA	NA	NA	22953	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.000000	0.383085	
mm_158399.1	chrX	136743043	136743243	-	1	NA	NA	NA	186	NR_033324	436230	Mm.443049	NM_001033001	ENSMUSG00000087368	BC065397	R75336|parl7	cDNA sequence BC065397	ncRNA	0.010000	0.303483	
mm_156585.1	chrX	152144112	152144312	+	1	NA	NA	NA	-56	NM_001114664	245666	Mm.33027	NM_001005475	ENSMUSG00000041115	Iqsec2	Brag1	IQ motif and Sec7 domain 2	protein-coding	0.170000	0.845771	
mm_86933.1	chr10	24188992	24189192	+	1	NA	NA	NA	-34425	NM_021509	59012	Mm.285934	NM_021509	ENSMUSG00000020000	Moxd1	3230402N08Rik|MNCb-5203	monooxygenase, DBH-like 1	protein-coding	0.000000	0.402985	
mm_12235.1	chr2	68582343	68582543	+	1	NA	NA	NA	30	NM_177651	227998	Mm.67562	NM_177651	ENSMUSG00000053896	4933409G03Rik	-	RIKEN cDNA 4933409G03 gene	protein-coding	0.000000	0.477612	
mm_137834.1	chr17	30871197	30871397	+	1	NA	NA	NA	-30570	NM_021332	14652	Mm.390969	NM_021332	ENSMUSG00000024027	Glp1r	GLP-1R|GLP1Rc	glucagon-like peptide 1 receptor	protein-coding	0.025000	0.537313	
mm_16938.1	chr2	14073759	14073959	-	1	NA	NA	NA	75	NR_038162	70957	Mm.399049	NR_038162	ENSMUSG00000086657	Stamos	4921530L18Rik	signal transducing adaptor molecule (SH3 domain and ITAM motif) 1, opposite strand	ncRNA	0.065000	0.567164	
mm_170485.1	chr19	15699706	15699906	+	1	NA	NA	NA	224816	NM_001205339	107272	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0.010000	0.447761	
mm_101025.1	chr11	8579156	8579356	-	1	NA	NA	NA	85279	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.015000	0.417910	
mm_42552.1	chr5	116635196	116635396	+	1	NA	NA	NA	-43479	NM_026886	68955	Mm.146779	NM_026886	ENSMUSG00000063919	Srrm4	1500001A10Rik|B230202K19Rik|bv|mKIAA1853|nSR100	serine/arginine repetitive matrix 4	protein-coding	0.005000	0.368159	
mm_81487.1	chr9	110003084	110003284	+	1	NA	NA	NA	-48837	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.015000	0.462687	
mm_127819.1	chr15	5108380	5108580	-	1	NA	NA	NA	53	NM_001163138	239319	Mm.31252	NM_001163138	ENSMUSG00000041849	Card6	D730008L15	caspase recruitment domain family, member 6	protein-coding	0.020000	0.442786	
mm_12215.1	chr2	67508046	67508246	+	1	NA	NA	NA	62144	NM_001024618	241431	Mm.261043	NM_001024618	ENSMUSG00000027022	Xirp2	2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2	xin actin-binding repeat containing 2	protein-coding	0.005000	0.437811	82(GTTTATATAGGC,+,0.00)
mm_49669.1	chr6	31288894	31289094	+	1	NA	NA	NA	68643	NR_040261	73652	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.025000	0.577114	81(GCCTTGAAATGG,-,0.00)
mm_136471.1	chr16	95728839	95729039	-	1	NA	NA	NA	26532	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.015000	0.502488	
mm_161457.1	chr15	76208598	76208798	-	1	NA	NA	NA	-45	NM_201387	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.025000	0.641791	
mm_87334.1	chr10	43221384	43221584	+	1	NA	NA	NA	-2	NM_027772	71365	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding	0.050000	0.606965	
mm_160862.1	chr11	59737080	59737280	+	1	NA	NA	NA	2974	NR_045476	69320	Mm.443242	NR_045476	ENSMUSG00000086330	1700007J10Rik	4930573L17Rik	RIKEN cDNA 1700007J10 gene	ncRNA	0.025000	0.621891	
mm_5896.1	chr1	54557547	54557747	-	1	NA	NA	NA	37	NM_001163314	241062	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.090000	0.671642	
mm_110140.1	chr12	26448065	26448265	-	1	NA	NA	NA	8287	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.358209	
mm_165394.1	chr2	132006697	132006897	+	1	NA	NA	NA	23191	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.030000	0.562189	
mm_25593.1	chr3	116899579	116899779	+	1	NA	NA	NA	37999	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.000000	0.467662	
mm_74544.1	chr8	10483843	10484043	-	1	NA	NA	NA	330032	NM_001319151	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.010000	0.467662	
mm_66363.1	chr7	43532361	43532561	-	1	NA	NA	NA	710	NM_001111058	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.000000	0.487562	
mm_101725.1	chr11	42182435	42182635	-	1	NA	NA	NA	395	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding	0.030000	0.482587	
mm_148738.1	chr19	5929846	5930046	+	1	NA	NA	NA	-5130	NM_026772	104252	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.020000	0.557214	
mm_79594.1	chr9	58435737	58435937	+	1	NA	NA	NA	-19336	NR_040736	74879	Mm.416924	NR_040736	ENSMUSG00000097651	4930461G14Rik	-	RIKEN cDNA 4930461G14 gene	ncRNA	0.015000	0.452736	
mm_82.1	chr1	6841916	6842116	+	1	NA	NA	NA	111965	NR_045188	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.452736	
mm_125955.1	chr15	76249205	76249405	+	1	NA	NA	NA	1114	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.020000	0.537313	
mm_112088.1	chr12	112674659	112674859	-	1	NA	NA	NA	125	NM_001331107	11651	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.015000	0.587065	
mm_165036.1	chr19	37434687	37434887	+	1	NA	NA	NA	-54	NM_008245	15242	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0.125000	0.731343	
mm_55675.1	chr6	72557702	72557902	-	1	NA	NA	NA	8155	NM_001271395	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.025000	0.587065	
mm_43952.1	chr5	145204449	145204649	+	1	NA	NA	NA	-10	NM_016683	22757	Mm.332842	NM_016683	ENSMUSG00000055991	Zkscan5	AI132486|AI326970|Zfp95|hKraba1	zinc finger with KRAB and SCAN domains 5	protein-coding	0.050000	0.572139	
mm_138505.1	chr17	35234999	35235199	+	1	NA	NA	NA	89	NM_001347351	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.100000	0.726368	
mm_167663.1	chr9	71485765	71485965	+	1	NA	NA	NA	118	NM_178602	28015	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	0.150000	0.726368	
mm_74030.1	chr8	121792361	121792561	+	1	NA	NA	NA	37108	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.015000	0.562189	
mm_163566.1	chr13	28532401	28532601	+	1	NA	NA	NA	178372	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.000000	0.487562	
mm_129855.1	chr15	83174163	83174363	-	1	NA	NA	NA	-2055	NM_029787	109754	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.030000	0.497512	
mm_27160.1	chr3	33142916	33143116	-	1	NA	NA	NA	175	NM_001163516	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.185000	0.800995	
mm_167987.1	chrX	170009190	170009390	+	1	NA	NA	NA	-30373	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.190000	0.825871	
mm_72586.1	chr8	84338501	84338701	+	1	NA	NA	NA	-68199	NM_026350	67736	Mm.30095	NM_026350	ENSMUSG00000004994	Ccdc130	4930527D15Rik|C77430	coiled-coil domain containing 130	protein-coding	0.050000	0.582090	
mm_154896.1	chrX	20870187	20870387	+	1	NA	NA	NA	121	NM_001294280	21857	Mm.8245	NM_011593	ENSMUSG00000001131	Timp1	Clgi|EPA|TIMP-1|TPA-S1|Timp	tissue inhibitor of metalloproteinase 1	protein-coding	0.045000	0.606965	
mm_52132.1	chr6	97944472	97944672	+	1	NA	NA	NA	14755	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.452736	
mm_85453.1	chr9	105131704	105131904	-	1	NA	NA	NA	1	NM_029385	75686	Mm.305810	NM_029385	ENSMUSG00000032565	Nudt16	2310041H06Rik|2810047L04Rik|2900006H04Rik|AI851783	nudix (nucleoside diphosphate linked moiety X)-type motif 16	protein-coding	0.085000	0.666667	
mm_50180.1	chr6	41604929	41605129	+	1	NA	NA	NA	-453	NM_001146351	13848	Mm.271976	NM_007680	ENSMUSG00000029869	Ephb6	Cekl|Mep	Eph receptor B6	protein-coding	0.020000	0.472637	
mm_62487.1	chr7	101896734	101896934	+	1	NA	NA	NA	503	NM_001291349	75430	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.050000	0.517413	
mm_8763.1	chr1	160792716	160792916	-	1	NA	NA	NA	122	NM_013862	29809	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0.120000	0.731343	
mm_77548.1	chr8	123236118	123236318	-	1	NA	NA	NA	-9	NM_030176	78779	Mm.41459	NM_030176	ENSMUSG00000033594	Spata2l	2610039E05Rik|AI648233|mKIAA4138	spermatogenesis associated 2-like	protein-coding	0.080000	0.661692	
mm_141490.1	chr17	31277297	31277497	-	1	NA	NA	NA	-41	NM_025290	22092	Mm.12743	NM_025290	ENSMUSG00000024033	Rsph1	MCA|Tsga2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding	0.075000	0.631841	
mm_36344.1	chr4	73770995	73771195	-	1	NA	NA	NA	19507	NM_001017427	242505	Mm.389582	NM_001017427	ENSMUSG00000043003	Rasef	BC030882|RAB45	RAS and EF hand domain containing	protein-coding	0.000000	0.378109	
mm_171449.1	chr4	145432286	145432486	+	1	NA	NA	NA	-31824	NR_002888	545700	Mm.389595	NR_002888	ENSMUSG00000052912	Smarca5-ps	9230115A19Rik|OTTMUSG00000011029	SWI/SNF related, matrix associated, actin depenent ragulator of chromatin, subfamily a, member 5, pseudogene	pseudo	0.020000	0.462687	
mm_40649.1	chr5	65107504	65107704	+	1	NA	NA	NA	36	NM_001347355	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.135000	0.776119	
mm_43809.1	chr5	142904268	142904468	+	1	NA	NA	NA	2386	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.025000	0.517413	
mm_65422.1	chr7	25297405	25297605	-	1	NA	NA	NA	450	NM_008776	18476	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	0.100000	0.696517	
mm_165709.1	chr3	98352071	98352271	-	1	NA	NA	NA	-12202	NM_016966	236539	Mm.16898	NM_016966	ENSMUSG00000053398	Phgdh	3-PGDH|3PGDH|4930479N23|A10|PGAD|PGD|PGDH|SERA	3-phosphoglycerate dehydrogenase	protein-coding	0.025000	0.467662	
mm_125717.1	chr15	68929268	68929468	+	1	NA	NA	NA	948	NM_010158	13992	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding	0.040000	0.611940	
mm_133384.1	chr16	84773554	84773754	+	1	NA	NA	NA	-469	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.025000	0.487562	
mm_28292.1	chr3	89093221	89093421	-	1	NA	NA	NA	42	NM_001083807	72296	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.075000	0.671642	
mm_92772.1	chr10	81167676	81167876	-	1	NA	NA	NA	-56	NM_021501	59004	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0.110000	0.691542	
mm_162412.1	chr1	87128504	87128704	+	1	NA	NA	NA	3596	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.010000	0.497512	
mm_24291.1	chr3	89246345	89246545	+	1	NA	NA	NA	7	NM_025327	66059	Mm.177991	NM_025327	ENSMUSG00000042747	Krtcap2	0610010I12Rik|Kcp2	keratinocyte associated protein 2	protein-coding	0.090000	0.626866	
mm_101287.1	chr11	21996966	21997166	-	1	NA	NA	NA	4585	NM_011023	18423	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.065000	0.616915	
mm_53182.1	chr6	125432585	125432785	+	1	NA	NA	NA	-52181	NM_198604	213522	Mm.333396	NM_198604	ENSMUSG00000038167	Plekhg6	BC026778|Gm155	pleckstrin homology domain containing, family G (with RhoGef domain) member 6	protein-coding	0.015000	0.457711	
mm_26523.1	chr3	145937934	145938134	+	1	NA	NA	NA	2	NM_025555	66421	Mm.25137	NM_025555	ENSMUSG00000036873	2410004B18Rik	4930572C24Rik	RIKEN cDNA 2410004B18 gene	protein-coding	0.115000	0.676617	
mm_32240.1	chr4	102421461	102421661	+	1	NA	NA	NA	-148499	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.035000	0.492537	
mm_34923.1	chr4	155803520	155803720	+	1	NA	NA	NA	2	NM_025570	66448	Mm.23825	NM_025570	ENSMUSG00000029066	Mrpl20	2610008D01Rik|4930425I20Rik	mitochondrial ribosomal protein L20	protein-coding	0.100000	0.656716	
mm_86838.1	chr10	21396016	21396216	+	1	NA	NA	NA	18816	NM_178713	237320	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0.005000	0.452736	
mm_116427.1	chr13	41847427	41847627	-	1	NA	NA	NA	-39	NM_175417	109254	Mm.25195	NM_175417	ENSMUSG00000058022	Adtrp	9530008L14Rik	androgen dependent TFPI regulating protein	protein-coding	0.035000	0.502488	
mm_154043.1	chr19	53944144	53944344	-	1	NA	NA	NA	-62	NM_001168505	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.050000	0.601990	
mm_15516.1	chr2	158313149	158313349	+	1	NA	NA	NA	6756	NM_008489	16803	Mm.218846	NM_008489	ENSMUSG00000016024	Lbp	Bpifd2|Ly88	lipopolysaccharide binding protein	protein-coding	0.000000	0.373134	
mm_167750.1	chr9	109931790	109931990	+	1	NA	NA	NA	116	NM_008633	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.095000	0.711443	
mm_113833.1	chr13	47106306	47106506	+	1	NA	NA	NA	-185	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.140000	0.781095	
mm_88985.1	chr10	81564351	81564551	+	1	NA	NA	NA	5007	NM_001276288	14797	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.015000	0.636816	
mm_67267.1	chr7	75780417	75780617	-	1	NA	NA	NA	-67821	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.005000	0.422886	
mm_144471.1	chr18	23857979	23858179	+	1	NA	NA	NA	54109	NM_153058	212307	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.030000	0.502488	
mm_20627.1	chr2	131991572	131991772	-	1	NA	NA	NA	38316	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.000000	0.447761	
mm_116778.1	chr13	52982604	52982804	-	1	NA	NA	NA	-1665	NM_017373	18030	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0.035000	0.363184	
mm_166991.1	chr7	46088999	46089199	+	1	NA	NA	NA	11138	NM_010602	16514	Mm.333863	NM_010602	ENSMUSG00000096146	Kcnj11	Kir6.2|mBIR	potassium inwardly rectifying channel, subfamily J, member 11	protein-coding	0.000000	0.378109	
mm_58197.1	chr6	143099969	143100169	-	1	NA	NA	NA	83	NM_001286578	74741	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.085000	0.671642	
mm_78462.1	chr9	32501200	32501400	+	1	NA	NA	NA	40152	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.015000	0.417910	
mm_93980.1	chr10	127349004	127349204	-	1	NA	NA	NA	2744	NM_008382	16326	Mm.3510	NM_008382	ENSMUSG00000047492	Inhbe	-	inhibin beta-E	protein-coding	0.015000	0.507463	
mm_54012.1	chr6	8180165	8180365	-	1	NA	NA	NA	12352	NM_001037865	213945	Mm.297404	NM_001037865	ENSMUSG00000068794	Col28a1	Col28|Gm466	collagen, type XXVIII, alpha 1	protein-coding	0.000000	0.393035	
mm_40021.1	chr5	33336141	33336341	+	1	NA	NA	NA	669	NM_021500	59003	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	0.070000	0.611940	
mm_30672.1	chr4	11156672	11156872	+	1	NA	NA	NA	331	NM_021897	60599	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.080000	0.601990	
mm_156705.1	chrX	159626993	159627193	+	1	NA	NA	NA	-179	NM_001135727	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.085000	0.716418	
mm_53373.1	chr6	129462567	129462767	+	1	NA	NA	NA	10112	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.393035	-22(GGCTTTTAAAGT,-,0.00),-21(GCTTTTAAAGTC,+,0.00)
mm_9592.1	chr1	174921652	174921852	-	1	NA	NA	NA	67	NM_011825	23893	Mm.25760	NM_011825	ENSMUSG00000050069	Grem2	Gremlin2|Prdc	gremlin 2, DAN family BMP antagonist	protein-coding	0.085000	0.676617	
mm_123291.1	chr14	61556632	61556832	-	1	NA	NA	NA	154	NM_025697	66674	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0.125000	0.761194	
mm_29698.1	chr3	123116932	123117132	-	1	NA	NA	NA	-82045	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.060000	0.606965	
mm_9118.1	chr1	170211645	170211845	-	1	NA	NA	NA	3648	NM_010633	16589	Mm.209150	NM_010633	ENSMUSG00000026667	Uhmk1	4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|OTTMUSG00000021542|P-CIP2	U2AF homology motif (UHM) kinase 1	protein-coding	0.025000	0.457711	
mm_144873.1	chr18	36751007	36751207	+	1	NA	NA	NA	6451	NM_011879	24010	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	0.020000	0.407960	-13(CTTTATATAGGC,+,0.00),16(GCTTTTCAAGAG,+,0.00)
mm_43370.1	chr5	135632543	135632743	+	1	NA	NA	NA	-11	NM_146002	215160	Mm.295438	NM_031398	ENSMUSG00000039917	Rhbdd2	0610011L13Rik|AI480532|Rhbdl7|Usmg1	rhomboid domain containing 2	protein-coding	0.075000	0.691542	
mm_80471.1	chr9	78168732	78168932	+	1	NA	NA	NA	-7082	NR_040401	320295	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	0.005000	0.597015	
mm_98851.1	chr11	97662353	97662553	+	1	NA	NA	NA	-959	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.030000	0.507463	-86(ACTTTAAAACGC,+,0.00)
mm_81396.1	chr9	108991861	108992061	+	1	NA	NA	NA	59	NM_173019	270198	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0.065000	0.646766	
mm_90804.1	chr10	7663980	7664180	-	1	NA	NA	NA	-472	NM_001347228	18537	Mm.258431	NM_008786	ENSMUSG00000019795	Pcmt1	C79501|PIMT	protein-L-isoaspartate (D-aspartate) O-methyltransferase 1	protein-coding	0.015000	0.427861	
mm_149843.1	chr19	25039129	25039329	+	1	NA	NA	NA	39700	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.005000	0.373134	
mm_158295.1	chrX	113171879	113172079	-	1	NA	NA	NA	13536	NM_018818	12662	Mm.257316	NM_018818	ENSMUSG00000025531	Chm	Rep-1	choroidermia (RAB escort protein 1)	protein-coding	0.015000	0.422886	
mm_55340.1	chr6	56568827	56569027	-	1	NA	NA	NA	135772	NM_025520	66373	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.085000	0.706468	
mm_79540.1	chr9	57910447	57910647	+	1	NA	NA	NA	-439	NM_027086	69459	Mm.41735	NM_027086	ENSMUSG00000055720	Ubl7	2300004C15Rik	ubiquitin-like 7 (bone marrow stromal cell-derived)	protein-coding	0.060000	0.567164	
mm_141289.1	chr17	28066911	28067111	-	1	NA	NA	NA	13573	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.035000	0.582090	17(TCTTAAAAACCC,+,0.00)
mm_158041.1	chrX	98890359	98890559	-	1	NA	NA	NA	566	NM_052976	94190	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	0.065000	0.631841	
mm_173144.1	chrX	21875346	21875546	+	1	NA	NA	NA	160546	NM_020049	56774	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	0.000000	0.412935	
mm_64185.1	chr7	141459591	141459791	+	1	NA	NA	NA	-1403	NM_001025103	213573	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.045000	0.646766	
mm_112181.1	chr12	113422057	113422257	-	1	NA	NA	NA	-67408	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.035000	0.512438	
mm_91900.1	chr10	60162291	60162491	-	1	NA	NA	NA	35615	NR_105871	102465546		NR_105871	ENSMUSG00000105468	Mir6906	mmu-mir-6906	microRNA 6906	ncRNA	0.015000	0.477612	-20(CTCTTTATATGC,-,0.00),-18(CTTTATATGCTC,+,0.00)
mm_71650.1	chr8	60195745	60195945	+	1	NA	NA	NA	-310279	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.000000	0.522388	
mm_112558.1	chr13	13030878	13031078	+	1	NA	NA	NA	-25648	NM_031191	18811	Mm.88796	NM_031191	ENSMUSG00000079092	Prl2c2	Ghd2|MRP-1|PLF-1|Plf|Plf1	prolactin family 2, subfamily c, member 2	protein-coding	0.015000	0.457711	
mm_99369.1	chr11	101787670	101787870	+	1	NA	NA	NA	-2460	NM_001316365	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.010000	0.398010	
mm_121218.1	chr14	103054770	103054970	+	1	NA	NA	NA	7858	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.557214	-22(GGCCTTTAAGAG,-,0.00),-21(GCCTTTAAGAGC,-,0.00),-20(CCTTTAAGAGCT,+,0.00)
mm_105788.1	chr11	109827951	109828151	-	1	NA	NA	NA	-5	NM_001162428	69324	Mm.31700	NM_027038	ENSMUSG00000020617	1700012B07Rik	1700069D21Rik	RIKEN cDNA 1700012B07 gene	protein-coding	0.010000	0.462687	66(TTGTATAAAGGC,-,0.00)
mm_147178.1	chr18	36766099	36766299	-	1	NA	NA	NA	15	NM_173383	213236	Mm.234464	NM_173383	ENSMUSG00000044595	Dnd1	BC034897|RBMS4|Ter	DND microRNA-mediated repression inhibitor 1	protein-coding	0.035000	0.527363	
mm_76664.1	chr8	93379651	93379851	-	1	NA	NA	NA	-42542	NM_021456	12623	Mm.22720	NM_021456	ENSMUSG00000057074	Ces1g	Ces-1|Ces1|Ses-1	carboxylesterase 1G	protein-coding	0.005000	0.447761	
mm_6433.1	chr1	73962925	73963125	-	1	NA	NA	NA	-98559	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.010000	0.557214	
mm_17058.1	chr2	21205535	21205735	-	1	NA	NA	NA	-89	NM_001001297	208967	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	0.090000	0.601990	
mm_151956.1	chr19	5801259	5801459	-	1	NA	NA	NA	1313	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.015000	0.492537	-52(GCTTTTAAAATC,+,0.00),-51(CTTTTAAAATCC,+,0.00)
mm_66930.1	chr7	61530027	61530227	-	1	NA	NA	NA	85200	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.005000	0.422886	
mm_138883.1	chr17	43389407	43389607	+	1	NA	NA	NA	41	NM_001081178	224792	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	0.035000	0.557214	
mm_39795.1	chr5	30589963	30590163	+	1	NA	NA	NA	-1444	NR_040427	100502829	Mm.39944	NR_040427	ENSMUSG00000053214	Gm9899	ENSMUSG00000053214	predicted gene 9899	ncRNA	0.010000	0.532338	
mm_86369.1	chr9	123797495	123797695	-	1	NA	NA	NA	-8882	NM_030712	80901	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.025000	0.582090	
mm_43729.1	chr5	139722836	139723036	+	1	NA	NA	NA	13397	NM_174850	231830	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.010000	0.502488	
mm_70351.1	chr8	5117211	5117411	+	1	NA	NA	NA	-12024	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.025000	0.442786	
mm_56888.1	chr6	119035841	119036041	-	1	NA	NA	NA	72554	NM_001159534	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.005000	0.348259	
mm_32362.1	chr4	105172093	105172293	+	1	NA	NA	NA	14846	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.010000	0.353234	
mm_89692.1	chr10	97565699	97565899	+	1	NA	NA	NA	298	NM_008524	17022	Mm.18888	NM_008524	ENSMUSG00000036446	Lum	Ldc|SLRR2D	lumican	protein-coding	0.015000	0.512438	
mm_69319.1	chr7	128461295	128461495	-	1	NA	NA	NA	118	NM_009383	21843	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.070000	0.661692	
mm_170560.1	chr19	45451145	45451345	-	1	NA	NA	NA	87511	NM_001037758	12234	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.040000	0.482587	1(GCTTATAGACCG,+,0.00)
mm_76679.1	chr8	94012031	94012231	-	1	NA	NA	NA	509	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.150000	0.800995	
mm_58364.1	chr6	148444247	148444447	-	1	NA	NA	NA	5	NM_001347518	387314	Mm.137858	NM_198967	ENSMUSG00000030306	Tmtc1	Arg99|BC023818	transmembrane and tetratricopeptide repeat containing 1	protein-coding	0.130000	0.761194	
mm_73527.1	chr8	107580848	107581048	+	1	NA	NA	NA	7534	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.035000	0.422886	
mm_71606.1	chr8	56294485	56294685	+	1	NA	NA	NA	33	NM_008278	15446	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.090000	0.646766	-32(GGCTATAAAAGC,-,0.00)
mm_135533.1	chr16	49768697	49768897	-	1	NA	NA	NA	69503	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.015000	0.502488	-34(GGCCTTTAAAAC,-,0.00),-33(GCCTTTAAAACC,+,0.00),-32(CCTTTAAAACCT,+,0.00)
mm_166135.1	chr4	155892147	155892347	+	1	NA	NA	NA	372	NM_207223	140500	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	0.165000	0.791045	
mm_40955.1	chr5	76858646	76858846	+	1	NA	NA	NA	18147	NM_001163793	320827	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.025000	0.592040	
mm_120481.1	chr14	65975611	65975811	+	1	NA	NA	NA	7228	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.055000	0.587065	
mm_141140.1	chr17	26286962	26287162	-	1	NA	NA	NA	34152	NR_037905	66978	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	0.005000	0.492537	
mm_84682.1	chr9	72110795	72110995	-	1	NA	NA	NA	306	NM_001253862	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.055000	0.606965	
mm_10186.1	chr2	4881755	4881955	+	1	NA	NA	NA	291	NM_175400	109079	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0.125000	0.686567	
mm_7161.1	chr1	91931074	91931274	-	1	NA	NA	NA	129713	NM_007855	13345	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	0.010000	0.427861	
mm_45823.1	chr5	87692737	87692937	-	1	NA	NA	NA	6588	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.268657	37(GACTCTATATGC,-,0.00)
mm_81814.1	chr9	118040480	118040680	+	1	NA	NA	NA	58	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.130000	0.691542	-80(CCCTATATAGTC,+,0.00)
mm_112232.1	chr12	113482221	113482421	-	1	NA	NA	NA	-7244	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.522388	
mm_220.1	chr1	16814201	16814401	+	1	NA	NA	NA	125845	NM_016923	17087	Mm.116844	NM_016923	ENSMUSG00000025779	Ly96	ESOP-1|MD-2|MD2	lymphocyte antigen 96	protein-coding	0.005000	0.467662	
mm_13526.1	chr2	110021854	110022054	+	1	NA	NA	NA	4137	NM_026613	68201	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	0.030000	0.502488	
mm_48355.1	chr5	139372089	139372289	-	1	NA	NA	NA	-2444	NR_029768	723898		NR_029768	ENSMUSG00000065593	Mir339	Mirn339|mir-339|mmu-mir-339	microRNA 339	ncRNA	0.115000	0.706468	
mm_84704.1	chr9	72690946	72691146	-	1	NA	NA	NA	28699	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.005000	0.467662	
mm_65423.1	chr7	25297460	25297660	-	1	NA	NA	NA	395	NM_008776	18476	Mm.597	NM_008776	ENSMUSG00000005447	Pafah1b3	Pafahg|mus[g]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 3	protein-coding	0.120000	0.676617	
mm_118232.1	chr13	111489808	111490008	-	1	NA	NA	NA	133	NM_028487	73274	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.080000	0.626866	
mm_114216.1	chr13	56288548	56288748	+	1	NA	NA	NA	7903	NM_019568	57266	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding	0.000000	0.343284	
mm_78953.1	chr9	45138720	45138920	+	1	NA	NA	NA	-222	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.105000	0.736318	
mm_165155.1	chr2	22589055	22589255	+	1	NA	NA	NA	-33172	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.020000	0.398010	
mm_29313.1	chr3	107986337	107986537	-	1	NA	NA	NA	-1	NM_008183	14863	Mm.440086	NM_008183	ENSMUSG00000040562	Gstm2	Gstb-2|Gstb2	glutathione S-transferase, mu 2	protein-coding	0.020000	0.512438	
mm_14314.1	chr2	129227935	129228135	+	1	NA	NA	NA	9066	NR_045838	329513	Mm.473529	NM_177847	ENSMUSG00000056738	A730036I17Rik	-	RIKEN cDNA A730036I17 gene	ncRNA	0.015000	0.527363	-28(GCCTTTAAGGTG,+,0.00),-27(CCTTTAAGGTGC,+,0.00),71(GACTAGAAAAGG,-,0.00)
mm_38366.1	chr4	138343528	138343728	-	1	NA	NA	NA	-17332	NM_026880	68943	Mm.18539	NM_026880	ENSMUSG00000028756	Pink1	1190006F07Rik|AU042772|AW557854|BRPK|mFLJ00387	PTEN induced putative kinase 1	protein-coding	0.015000	0.512438	
mm_89091.1	chr10	84206560	84206760	+	1	NA	NA	NA	233811	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.000000	0.298507	
mm_106797.1	chr12	4917204	4917404	+	1	NA	NA	NA	-49	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.110000	0.716418	
mm_86741.1	chr10	19186487	19186687	+	1	NA	NA	NA	19349	NR_038022	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.010000	0.457711	
mm_26510.1	chr3	145878891	145879091	+	1	NA	NA	NA	-45271	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.045000	0.437811	
mm_59215.1	chr7	24547400	24547600	+	1	NA	NA	NA	350	NM_009532	22594	Mm.4347	NM_009532	ENSMUSG00000051768	Xrcc1	Xrcc-1	X-ray repair complementing defective repair in Chinese hamster cells 1	protein-coding	0.040000	0.582090	
mm_59177.1	chr7	24457961	24458161	+	1	NA	NA	NA	-4422	NM_011113	18793	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.000000	0.507463	
mm_154535.1	chrM	13771	13971	-	1	NA	NA	NA	NA	NA									0.010000	0.358209	
mm_8937.1	chr1	164437321	164437521	-	1	NA	NA	NA	20934	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.015000	0.398010	
mm_154423.1	chrM	262	462	-	1	NA	NA	NA	NA	NA									0.045000	0.328358	
mm_7757.1	chr1	131136235	131136435	-	1	NA	NA	NA	1899	NM_145508	226419	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.015000	0.427861	
mm_103617.1	chr11	78608071	78608271	-	1	NA	NA	NA	-57436	NM_133706	69071	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0.005000	0.323383	
mm_124191.1	chr14	98104474	98104674	-	1	NA	NA	NA	65191	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.025000	0.462687	
mm_74508.1	chr8	8621206	8621406	-	1	NA	NA	NA	39467	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.040000	0.582090	-41(GCGTTTAAAGAC,-,0.00)
mm_2942.1	chr1	132316106	132316306	+	1	NA	NA	NA	81	NM_001195025	74137	Mm.100666	NM_028778	ENSMUSG00000009772	Nuak2	1200013B22Rik|Omphk2|Snark|mKIAA0537	NUAK family, SNF1-like kinase, 2	protein-coding	0.115000	0.701493	
mm_170630.1	chr19	8019462	8019662	+	1	NA	NA	NA	-53535	NM_134256	171405	Mm.326517	NM_134256	ENSMUSG00000067656	Slc22a27	Oat9|mOAT6-L|mOAT6-S	solute carrier family 22, member 27	protein-coding	0.040000	0.532338	-38(GGCTATAAAAGG,-,0.00)
mm_66044.1	chr7	30671461	30671661	-	1	NA	NA	NA	44	NR_027849	74927	Mm.87326	NM_183108	ENSMUSG00000049761	Pmis2	1700071L20Rik|4930479M11Rik	Pmis2, sperm specific protein	ncRNA	0.025000	0.502488	
mm_172726.1	chr8	73750709	73750909	-	1	NA	NA	NA	-397269	NM_010687	16795	Mm.324371	NM_010687	ENSMUSG00000004383	Large1	BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd	LARGE xylosyl- and glucuronyltransferase 1	protein-coding	0.030000	0.472637	
mm_120420.1	chr14	65368746	65368946	+	1	NA	NA	NA	10170	NM_199029	380912	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.020000	0.467662	-6(TTTTTTAAAGCT,+,0.00)
mm_107327.1	chr12	31670903	31671103	+	1	NA	NA	NA	16134	NM_001163126	238123	Mm.173068	NM_001163126	ENSMUSG00000035933	Cog5	5430405C01Rik|C87247|D18362|GOLTC1|GTC90	component of oligomeric golgi complex 5	protein-coding	0.000000	0.398010	
mm_20973.1	chr2	151973293	151973493	-	1	NA	NA	NA	1	NM_001289151	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.050000	0.592040	
mm_48866.1	chr5	150022649	150022849	-	1	NA	NA	NA	4074	NM_001289566	140498	Mm.444643	NM_080468	ENSMUSG00000053368	Rxfp2	Gpr106|Great|Lgr8	relaxin/insulin-like family peptide receptor 2	protein-coding	0.045000	0.542289	
mm_45157.1	chr5	49510142	49510342	-	1	NA	NA	NA	-224583	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.005000	0.298507	
mm_132994.1	chr16	55816683	55816883	+	1	NA	NA	NA	5355	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.015000	0.462687	
mm_33691.1	chr4	133480038	133480238	+	1	NA	NA	NA	5	NM_175307	100342	Mm.204656	NM_175307	ENSMUSG00000046694	Fam46b	4732473B16Rik|AU045678|AU046069	family with sequence similarity 46, member B	protein-coding	0.075000	0.676617	
mm_136682.1	chr17	6742264	6742464	+	1	NA	NA	NA	36534	NM_183368	83672	Mm.442201	NM_031395	ENSMUSG00000041831	Sytl3	A430092N21|Slp3|Slp3-a|Slp3-b|mFLJ00307	synaptotagmin-like 3	protein-coding	0.050000	0.626866	
mm_55580.1	chr6	71397248	71397448	-	1	NA	NA	NA	23921	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.025000	0.522388	-77(CCCTTTAAATGC,+,0.00),-77(CCCTTTAAATGC,-,0.00)
mm_161723.1	chr17	27908158	27908358	-	1	NA	NA	NA	-534	NM_026836	68776	Mm.267998	NM_026836	ENSMUSG00000024218	Taf11	1110038O14Rik|28kDa|AI115401|AL024207|AW552398|PRO214|TAF2I|TAFII28	TATA-box binding protein associated factor 11	protein-coding	0.015000	0.388060	
mm_11619.1	chr2	34771992	34772192	+	1	NA	NA	NA	2	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.100000	0.631841	-33(GGGTATATAAGG,-,0.00)
mm_92160.1	chr10	67540055	67540255	-	1	NA	NA	NA	2225	NM_001347458	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.020000	0.567164	
mm_205.1	chr1	16253490	16253690	+	1	NA	NA	NA	147708	NM_133832	98711	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.005000	0.522388	-4(TCTCTTAGAGGC,+,0.00)
mm_87794.1	chr10	60299709	60299909	+	1	NA	NA	NA	15348	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.552239	
mm_123510.1	chr14	66236198	66236398	-	1	NA	NA	NA	-22746	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.010000	0.417910	
mm_55985.1	chr6	85956935	85957135	-	1	NA	NA	NA	4632	NM_028099	72102	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	0.005000	0.437811	
mm_94556.1	chr11	11557316	11557516	+	1	NA	NA	NA	68150	NM_028669	73862	Mm.159077	NM_028669	ENSMUSG00000020191	4930415F15Rik	-	RIKEN cDNA 4930415F15 gene	protein-coding	0.035000	0.517413	
mm_32494.1	chr4	108301221	108301421	+	1	NA	NA	NA	-231	NM_001033634	414872	Mm.426241	NM_001033634	ENSMUSG00000034636	Zyg11b	1110046I03Rik|2810482G21Rik|D4Mgi23|Gm431|mKIAA1730	zyg-ll family member B, cell cycle regulator	protein-coding	0.050000	0.517413	-35(AGCCCTTAAAGG,-,0.00),-34(GCCCTTAAAGGG,-,0.00),-33(CCCTTAAAGGGG,+,0.00),-32(CCTTAAAGGGGC,+,0.00)
mm_141991.1	chr17	35173321	35173521	-	1	NA	NA	NA	2580	NM_019467	11629	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.005000	0.497512	
mm_15741.1	chr2	164237212	164237412	+	1	NA	NA	NA	1029	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.005000	0.407960	
mm_164019.1	chr14	75130531	75130731	-	1	NA	NA	NA	252	NM_027581	70859	Mm.320289	NM_027581	ENSMUSG00000021997	Lrrc63	4921509B22Rik	leucine rich repeat containing 63	protein-coding	0.070000	0.641791	
mm_74765.1	chr8	20902398	20902598	-	1	NA	NA	NA	-525	NM_001177471	100504014	Mm.490239	NM_001177471	ENSMUSG00000082976	Gm15056	Defb52|OTTMUSG00000018888	predicted gene 15056	protein-coding	0.005000	0.452736	
mm_62648.1	chr7	107684896	107685096	+	1	NA	NA	NA	73036	NM_001205227	320635	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	0.005000	0.303483	
mm_157884.1	chrX	75843094	75843294	-	1	NA	NA	NA	-131	NM_001346520	102866	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	0.010000	0.427861	-7(TGGTTTTAAAAG,-,0.00),-5(GTTTTAAAAGTG,+,0.00)
mm_144868.1	chr18	36734919	36735119	+	1	NA	NA	NA	-51	NM_028036	71983	Mm.135188	NM_028036	ENSMUSG00000006850	Tmco6	2410015B03Rik	transmembrane and coiled-coil domains 6	protein-coding	0.060000	0.552239	-93(TCTTTTATGAGC,+,0.00)
mm_100068.1	chr11	115412727	115412927	+	1	NA	NA	NA	7092	NM_027862	71679	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	0.065000	0.567164	
mm_57523.1	chr6	125594922	125595122	-	1	NA	NA	NA	42074	NM_011708	22371	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.015000	0.517413	
mm_78989.1	chr9	45402470	45402670	+	1	NA	NA	NA	-568	NM_052823	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.005000	0.547264	
mm_18193.1	chr2	45113841	45114041	-	1	NA	NA	NA	-662	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.005000	0.407960	
mm_109972.1	chr12	12938154	12938354	-	1	NA	NA	NA	3582	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.025000	0.398010	-93(TCTTTTAAGCCA,+,0.00)
mm_21458.1	chr2	160872487	160872687	-	1	NA	NA	NA	403	NM_177263	320799	Mm.436734	NM_177263	ENSMUSG00000035877	Zhx3	1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395	zinc fingers and homeoboxes 3	protein-coding	0.120000	0.771144	
mm_65620.1	chr7	27535824	27536024	-	1	NA	NA	NA	12663	NM_001033315	233020	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.020000	0.527363	
mm_140659.1	chr17	12851806	12852006	-	1	NA	NA	NA	16237	NM_008552	17171	Mm.425994	NM_008552	ENSMUSG00000068037	Mas1	Mas-1|Mgra	MAS1 oncogene	protein-coding	0.030000	0.562189	
mm_39930.1	chr5	31613896	31614096	+	1	NA	NA	NA	45	NM_025796	66845	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0.095000	0.656716	
mm_73474.1	chr8	106769348	106769548	+	1	NA	NA	NA	86380	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.010000	0.512438	
mm_41362.1	chr5	90507751	90507951	+	1	NA	NA	NA	-11098	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.015000	0.492537	
mm_1789.1	chr1	78669421	78669621	+	1	NA	NA	NA	11081	NM_001136226	195434	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0.010000	0.383085	-96(CTCTTTATGAGC,-,0.00)
mm_97965.1	chr11	83748197	83748397	+	1	NA	NA	NA	1357	NM_183249	66107	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.005000	0.532338	
mm_32370.1	chr4	105267417	105267617	+	1	NA	NA	NA	110170	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.005000	0.462687	
mm_27436.1	chr3	51566202	51566402	-	1	NA	NA	NA	-5479	NM_080793	73251	Mm.192111	NM_080793	ENSMUSG00000037111	Setd7	1600028F23Rik|H3K4MT|KMT7|Set7|Set7/9|mKIAA1717	SET domain containing (lysine methyltransferase) 7	protein-coding	0.020000	0.427861	-56(CCTCATAAAAGC,-,0.00)
mm_26139.1	chr3	137918462	137918662	+	1	NA	NA	NA	7	NM_019920	56692	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0.110000	0.661692	
mm_168477.1	chr11	48979229	48979429	-	1	NA	NA	NA	52	NM_001114679	667214	Mm.441306	NM_001114679	ENSMUSG00000069893	9930111J21Rik1	9930111J21Rik|Iigp	RIKEN cDNA 9930111J21 gene 1	protein-coding	0.000000	0.442786	9(CTCCCTTTAAGG,-,0.00),11(CCCTTTAAGGAC,+,0.00)
mm_55171.1	chr6	51920184	51920384	-	1	NA	NA	NA	92265	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.010000	0.358209	
mm_67125.1	chr7	70366055	70366255	-	1	NA	NA	NA	591	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.015000	0.388060	
mm_7538.1	chr1	124465240	124465440	-	1	NA	NA	NA	-419781	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.338308	-66(GTTTATAAAAGC,-,0.00)
mm_129381.1	chr15	78173958	78174158	-	1	NA	NA	NA	50	NM_025931	67042	Mm.30191	NM_025931	ENSMUSG00000016637	Ift27	2600013G09Rik|Rabl4	intraflagellar transport 27	protein-coding	0.040000	0.572139	
mm_110347.1	chr12	36253311	36253511	-	1	NA	NA	NA	-13	NM_001177877	71156	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	0.010000	0.507463	
mm_105459.1	chr11	104550488	104550688	-	1	NA	NA	NA	32	NM_001285990	217232	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	0.090000	0.592040	
mm_130739.1	chr15	101253882	101254082	-	1	NA	NA	NA	-12864	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.090000	0.626866	
mm_4043.1	chr1	165774625	165774825	+	1	NA	NA	NA	10945	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.020000	0.477612	
mm_87888.1	chr10	61782862	61783062	+	1	NA	NA	NA	902	NM_207000	404634	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	0.055000	0.641791	
mm_60591.1	chr7	44484793	44484993	+	1	NA	NA	NA	376	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.015000	0.492537	
mm_169318.1	chr14	113288280	113288480	+	1	NA	NA	NA	1266950	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA	0.040000	0.477612	-92(CTCCTTAAGAGG,-,0.00)
mm_168947.1	chr12	73772212	73772412	+	1	NA	NA	NA	-129012	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.000000	0.422886	
mm_18.1	chr1	5083078	5083278	+	1	NA	NA	NA	92	NM_001310442	108664	Mm.27082	NM_133826	ENSMUSG00000033793	Atp6v1h	0710001F19Rik|AU022349|CGI-11|SFD|SFDalpha|SFDbeta|VMA13	ATPase, H+ transporting, lysosomal V1 subunit H	protein-coding	0.105000	0.671642	
mm_137587.1	chr17	28008193	28008393	+	1	NA	NA	NA	72291	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.045000	0.616915	
mm_132452.1	chr16	36041091	36041291	+	1	NA	NA	NA	1	NM_027113	69544	Mm.37802	NM_027113	ENSMUSG00000034379	Wdr5b	2310009C03Rik|AI606931	WD repeat domain 5B	protein-coding	0.070000	0.577114	
mm_90092.1	chr10	116950540	116950740	+	1	NA	NA	NA	78	NR_038026	71086	Mm.214134	NR_038025		4933412E12Rik	-	RIKEN cDNA 4933412E12 gene	ncRNA	0.060000	0.611940	
mm_113397.1	chr13	33084030	33084230	+	1	NA	NA	NA	27	NM_173052	282663	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	0.000000	0.507463	
mm_16681.1	chr2	6872561	6872761	-	1	NA	NA	NA	-626	NM_001347094	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.165000	0.810945	
mm_141102.1	chr17	26021639	26021839	-	1	NA	NA	NA	121	NM_153140	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.010000	0.527363	
mm_66517.1	chr7	45103708	45103908	-	1	NA	NA	NA	14	NM_010189	14132	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0.015000	0.547264	
mm_166586.1	chr6	55154350	55154550	+	1	NA	NA	NA	20540	NM_009349	21743	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	0.005000	0.512438	
mm_99094.1	chr11	99907820	99908020	+	1	NA	NA	NA	0	NM_027568	70831	Mm.347981	NM_027568	ENSMUSG00000070334	Krtap31-1	4733401H21Rik|AI506529	keratin associated protein 31-1	protein-coding	0.005000	0.467662	-33(TTGTATAAAAGG,-,0.00)
mm_66344.1	chr7	43480282	43480482	-	1	NA	NA	NA	9641	NM_001164518	210094	Mm.228087	NM_001164518	ENSMUSG00000013367	Iglon5	A230106M20Rik|Gm1431	IgLON family member 5	protein-coding	0.005000	0.517413	
mm_93645.1	chr10	117357017	117357217	-	1	NA	NA	NA	19856	NM_001013391	432508	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.020000	0.338308	
mm_146408.1	chr18	84087567	84087767	+	1	NA	NA	NA	-491	NM_146090	225791	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.145000	0.756219	
mm_89399.1	chr10	90365118	90365318	+	1	NA	NA	NA	-210509	NM_001177397	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.010000	0.432836	
mm_116722.1	chr13	51702029	51702229	-	1	NA	NA	NA	50421	NM_029279	75420	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.010000	0.263682	
mm_31315.1	chr4	46138403	46138603	+	1	NA	NA	NA	-8	NM_001033201	433702	Mm.389536	NM_001033201	ENSMUSG00000028330	Ncbp1	AU014645|AW538051|CBP80	nuclear cap binding protein subunit 1	protein-coding	0.125000	0.681592	
mm_8521.1	chr1	154883913	154884113	-	1	NA	NA	NA	-158093	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.025000	0.512438	
mm_6650.1	chr1	79761663	79761863	-	1	NA	NA	NA	6	NM_001111279	69368	Mm.293273	NM_027057	ENSMUSG00000073643	Wdfy1	1700013B03Rik|1700120F24Rik|FENS-1|Jr1|WDF1|ZFYVE17|mKIAA1435	WD repeat and FYVE domain containing 1	protein-coding	0.125000	0.686567	
mm_163452.1	chr12	89635682	89635882	-	1	NA	NA	NA	-176701	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.010000	0.338308	
mm_24495.1	chr3	92373753	92373953	+	1	NA	NA	NA	-62	NR_003548	20761	Mm.57083	NR_003548	ENSMUSG00000046203	Sprr2g	-	small proline-rich protein 2G	pseudo	0.005000	0.452736	30(TTCTATAAAGAG,-,0.00)
mm_4875.1	chr1	187890571	187890771	+	1	NA	NA	NA	-107156	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.005000	0.412935	
mm_25520.1	chr3	114030706	114030906	+	1	NA	NA	NA	266	NM_007729	12814	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding	0.040000	0.482587	
mm_91608.1	chr10	41477479	41477679	-	1	NA	NA	NA	1265	NM_138315	171580	Mm.290431	NM_138315	ENSMUSG00000019823	Mical1	MICAL|MICAL-1|Nical	microtubule associated monooxygenase, calponin and LIM domain containing 1	protein-coding	0.040000	0.582090	
mm_85491.1	chr9	106133532	106133732	-	1	NA	NA	NA	-20492	NR_029549	387153		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	0.010000	0.477612	16(GGCTATAAAGAC,-,0.00)
mm_147839.1	chr18	62615585	62615785	-	1	NA	NA	NA	-19421	NM_001001803	408198	Mm.478742	NM_001001803	ENSMUSG00000060201	Spink7	EG408198|Ecg2	serine peptidase inhibitor, Kazal type 7 (putative)	protein-coding	0.005000	0.492537	
mm_13843.1	chr2	119547582	119547782	+	1	NA	NA	NA	-25	NM_019769	56398	Mm.214765	NM_019769	ENSMUSG00000014077	Chp1	1500003O03Rik|AA960066|AI046351|Cahp|Chp|Sid470p|p24|vac	calcineurin-like EF hand protein 1	protein-coding	0.090000	0.676617	
mm_95172.1	chr11	40734025	40734225	+	1	NA	NA	NA	464	NM_001290697	52653	Mm.276504	NM_026023	ENSMUSG00000020328	Nudcd2	-	NudC domain containing 2	protein-coding	0.070000	0.636816	
mm_51191.1	chr6	71201505	71201705	+	1	NA	NA	NA	1717	NM_017399	14080	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0.015000	0.477612	
mm_63649.1	chr7	128689071	128689271	+	1	NA	NA	NA	301	NM_001346517	101490	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0.020000	0.353234	
mm_80416.1	chr9	77838734	77838934	+	1	NA	NA	NA	-78531	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.010000	0.537313	
mm_74400.1	chr8	3279373	3279573	-	1	NA	NA	NA	144	NM_010568	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.085000	0.676617	
mm_28870.1	chr3	97702558	97702758	-	1	NA	NA	NA	-12096	NR_106084	102466229		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	0.030000	0.477612	
mm_5442.1	chr1	35439275	35439475	-	1	NA	NA	NA	589416	NM_145516	226971	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.000000	0.427861	
mm_27119.1	chr3	31225112	31225312	-	1	NA	NA	NA	75292	NM_008770	18417	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.020000	0.502488	
mm_158423.1	chrX	139357622	139357822	-	1	NA	NA	NA	16	NR_045456	78526	Mm.439073	NR_045455	ENSMUSG00000086807	Platr21	C330013F16Rik	pluripotency associated transcript 21	ncRNA	0.020000	0.547264	
mm_126375.1	chr15	80165669	80165869	+	1	NA	NA	NA	-7952	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.005000	0.482587	-33(AGGTATATAAGA,-,0.00)
mm_16226.1	chr2	173154674	173154874	+	1	NA	NA	NA	1701	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.035000	0.592040	
mm_133331.1	chr16	78440073	78440273	+	1	NA	NA	NA	-62992	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.010000	0.472637	
mm_10095.1	chr2	3336067	3336267	+	1	NA	NA	NA	-1	NM_030063	78245	Mm.99733	NM_030063	ENSMUSG00000026644	Acbd7	9230116B18Rik	acyl-Coenzyme A binding domain containing 7	protein-coding	0.035000	0.557214	-38(TGCTCTTTAAGC,-,0.00)
mm_162319.1	chr1	38725136	38725336	+	1	NA	NA	NA	95979	NM_001029878	381338	Mm.487137	NM_028403	ENSMUSG00000048814	Lonrf2	2900060P06Rik|AI851349	LON peptidase N-terminal domain and ring finger 2	protein-coding	0.005000	0.492537	
mm_93490.1	chr10	111997142	111997342	-	1	NA	NA	NA	22	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.015000	0.437811	-64(AGCCATATATGG,-,0.00),-62(CCATATATGGAG,+,0.00)
mm_92230.1	chr10	69098457	69098657	-	1	NA	NA	NA	-109995	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.015000	0.283582	-7(TTTTTTAAAGCA,+,0.00)
mm_14923.1	chr2	151458756	151458956	+	1	NA	NA	NA	17295	NM_198655	381393	Mm.280614	NM_198655	ENSMUSG00000061525	4921509C19Rik	Gm1005	RIKEN cDNA 4921509C19 gene	protein-coding	0.040000	0.487562	
mm_106410.1	chr11	119053296	119053496	-	1	NA	NA	NA	-12483	NM_013926	30951	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.130000	0.681592	-75(GTCCTTATATGG,-,0.00),-73(CCTTATATGGTG,+,0.00),-33(CGCCATATAAGG,-,0.00),-31(CCATATAAGGAC,+,0.00)
mm_5408.1	chr1	33813219	33813419	-	1	NA	NA	NA	1276	NM_133817	98403	Mm.289103	NM_133817	ENSMUSG00000042197	Zfp451	4930515K21Rik|4933435G09Rik|AI596398|COASTER|Kiaa0576-hp|Znf451|mKIAA1702	zinc finger protein 451	protein-coding	0.015000	0.452736	
mm_60751.1	chr7	45486198	45486398	+	1	NA	NA	NA	35	NM_001290999	56734	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0.015000	0.512438	
mm_8677.1	chr1	156718967	156719167	-	1	NA	NA	NA	-157	NM_145413	215015	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	0.140000	0.791045	
mm_17994.1	chr2	38154386	38154586	-	1	NA	NA	NA	132898	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.005000	0.278607	
mm_158532.1	chrX	143861347	143861547	-	1	NA	NA	NA	-34035	NM_007603	12338	Mm.30290	NM_007603	ENSMUSG00000067276	Capn6	-	calpain 6	protein-coding	0.000000	0.398010	
mm_132130.1	chr16	31852236	31852436	+	1	NA	NA	NA	-26474	NM_013900	30060	Mm.30988	NM_013900	ENSMUSG00000022780	Mfi2	CD228|MTf|Meltf	antigen p97 (melanoma associated) identified by monoclonal antibodies 133.2 and 96.5	protein-coding	0.005000	0.452736	
mm_123454.1	chr14	65299267	65299467	-	1	NA	NA	NA	32666	NM_015795	50759	Mm.65308	NM_015795	ENSMUSG00000034532	Fbxo16	4932435C24Rik|Fbx16	F-box protein 16	protein-coding	0.035000	0.492537	
mm_117819.1	chr13	98016031	98016231	-	1	NA	NA	NA	190034	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0.035000	0.577114	
mm_103878.1	chr11	83529093	83529293	-	1	NA	NA	NA	1325	NM_013653	20304	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.040000	0.577114	
mm_91202.1	chr10	21160847	21161047	-	1	NA	NA	NA	37	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.060000	0.592040	
mm_156960.1	chrX	169989443	169989643	+	1	NA	NA	NA	-10626	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.507463	
mm_69733.1	chr7	140881730	140881930	-	1	NA	NA	NA	39	NM_001127351	64384	Mm.29760	NM_022433	ENSMUSG00000025486	Sirt3	2310003L23Rik|AI848213|Sir2l3	sirtuin 3	protein-coding	0.095000	0.691542	
mm_12650.1	chr2	74745639	74745839	+	1	NA	NA	NA	-6945	NR_110447	102634401	Mm.235021	NR_110447	ENSMUSG00000085015	LOC102634401	-	uncharacterized LOC102634401	ncRNA	0.005000	0.557214	
mm_1372.1	chr1	66468196	66468396	+	1	NA	NA	NA	-151	NM_175510	329178	Mm.44798	NM_175510	ENSMUSG00000055567	Unc80	C030018G13Rik|C230061B10Rik|UNC-80	unc-80, NALCN activator	protein-coding	0.135000	0.791045	
mm_119434.1	chr14	46379335	46379535	+	1	NA	NA	NA	-89	NR_037981	100041724	Mm.383311	NM_001099324	ENSMUSG00000079261	Gm15217	OTTMUSG00000019524	predicted gene 15217	ncRNA	0.015000	0.442786	
mm_76767.1	chr8	95807335	95807535	-	1	NA	NA	NA	27	NM_178078	234594	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	0.105000	0.646766	
mm_33781.1	chr4	134864479	134864679	+	1	NA	NA	NA	43	NM_011270	19746	Mm.195461	NM_011270	ENSMUSG00000028825	Rhd	Rh|Rhced|Rhl1	Rh blood group, D antigen	protein-coding	0.040000	0.616915	
mm_34056.1	chr4	138304764	138304964	+	1	NA	NA	NA	126	NM_007838	13200	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	0.120000	0.741294	
mm_73719.1	chr8	112011320	112011520	+	1	NA	NA	NA	61	NM_020584	57321	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	0.085000	0.626866	
mm_45209.1	chr5	52992209	52992409	-	1	NA	NA	NA	-17	NR_040413	75954	Mm.258937	NR_040413	ENSMUSG00000106352	5033403H07Rik	-	RIKEN cDNA 5033403H07 gene	ncRNA	0.010000	0.477612	
mm_146670.1	chr18	12236253	12236453	-	1	NA	NA	NA	33	NM_008720	18145	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	Niemann-Pick type C1	protein-coding	0.115000	0.706468	
mm_7184.1	chr1	92730618	92730818	-	1	NA	NA	NA	-81877	NM_153114	260301	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.020000	0.577114	
mm_119739.1	chr14	54121939	54122139	+	1	NA	NA	NA	131890	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.492537	
mm_167548.1	chr9	30563135	30563335	+	1	NA	NA	NA	135906	NM_028874	102607	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	0.000000	0.417910	60(AGGTATAAAAGA,-,0.00)
mm_123154.1	chr14	57130814	57131014	-	1	NA	NA	NA	2697	NM_001271663	14623	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	0.015000	0.527363	
mm_28164.1	chr3	87846495	87846695	-	1	NA	NA	NA	-160	NM_001025571	27371	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	0.010000	0.457711	
mm_107304.1	chr12	31073787	31073987	+	1	NA	NA	NA	-81	NM_027828	104943	Mm.248938	NM_027828	ENSMUSG00000036136	Fam110c	9030611O19Rik|AU019489	family with sequence similarity 110, member C	protein-coding	0.070000	0.661692	
mm_91527.1	chr10	37140859	37141059	-	1	NA	NA	NA	-2033	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.080000	0.671642	
mm_11252.1	chr2	29891896	29892096	+	1	NA	NA	NA	1933	NM_013615	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.025000	0.547264	-36(AGGTTTAAAAGG,-,0.00),-34(GTTTAAAAGGCC,+,0.00)
mm_82871.1	chr9	32423745	32423945	-	1	NA	NA	NA	29860	NM_001168354	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.015000	0.547264	
mm_99267.1	chr11	101246314	101246514	+	1	NA	NA	NA	80	NM_019444	54409	Mm.260698	NM_019444	ENSMUSG00000001240	Ramp2	-	receptor (calcitonin) activity modifying protein 2	protein-coding	0.120000	0.761194	
mm_119729.1	chr14	54074893	54075093	+	1	NA	NA	NA	178936	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.487562	
mm_77689.1	chr8	126585601	126585801	-	1	NA	NA	NA	7735	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.035000	0.522388	
mm_117933.1	chr13	99434349	99434549	-	1	NA	NA	NA	-21623	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.010000	0.452736	
mm_56941.1	chr6	119933598	119933798	-	1	NA	NA	NA	31000	NM_001166381	19365	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.000000	0.293532	
mm_14395.1	chr2	129801486	129801686	+	1	NA	NA	NA	-127	NR_029452	654409	Mm.305555	NR_029452		4932416H05Rik	-	RIKEN cDNA 4932416H05 gene	ncRNA	0.105000	0.721393	
mm_64644.1	chr7	4009419	4009619	-	1	NA	NA	NA	53685	NM_001302677	52855	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.005000	0.393035	
mm_136110.1	chr16	85494249	85494449	-	1	NA	NA	NA	56024	NM_144853	224405	Mm.213203	NM_144853	ENSMUSG00000041134	Cyyr1	-	cysteine and tyrosine-rich protein 1	protein-coding	0.005000	0.313433	
mm_95337.1	chr11	46815628	46815828	+	1	NA	NA	NA	4929	NM_178759	276891	Mm.69002	NM_178759	ENSMUSG00000055546	Timd4	B430010N18Rik|TIM-4|Tim4	T cell immunoglobulin and mucin domain containing 4	protein-coding	0.020000	0.512438	
mm_26099.1	chr3	136935481	136935681	+	1	NA	NA	NA	265515	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.025000	0.353234	
mm_79560.1	chr9	58079247	58079447	+	1	NA	NA	NA	22878	NM_029212	382077	Mm.335193	NM_029212	ENSMUSG00000037716	Ccdc33	4930535E21Rik|Gm1117|Tzip1	coiled-coil domain containing 33	protein-coding	0.010000	0.497512	
mm_165847.1	chr4	8735994	8736194	+	1	NA	NA	NA	45688	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.000000	0.328358	
mm_47105.1	chr5	118434732	118434932	-	1	NA	NA	NA	-125887	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.020000	0.497512	
mm_120117.1	chr14	59526642	59526842	+	1	NA	NA	NA	71217	NM_001168537	71891	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0.000000	0.318408	
mm_96351.1	chr11	66957806	66958006	+	1	NA	NA	NA	12	NR_130646	71576	Mm.340077	NR_130315	ENSMUSG00000085683	9130409J20Rik	-	RIKEN cDNA 9130409J20 gene	ncRNA	0.010000	0.487562	
mm_43765.1	chr5	140705005	140705205	+	1	NA	NA	NA	39	NM_001276287	231841	Mm.271932	NM_172724	ENSMUSG00000000148	Brat1	AA881470|Baat1	BRCA1-associated ATM activator 1	protein-coding	0.095000	0.646766	
mm_113429.1	chr13	34652826	34653026	+	1	NA	NA	NA	3	NR_105041	101056149	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	OTTMUSG00000027716	predicted gene 15908	ncRNA	0.100000	0.696517	
mm_79958.1	chr9	66158139	66158339	+	1	NA	NA	NA	13	NM_010019	13143	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	0.155000	0.800995	
mm_18824.1	chr2	74659741	74659941	-	1	NA	NA	NA	-284	NM_007967	14029	Mm.25365	NM_007967	ENSMUSG00000001815	Evx2	Evx-2	even-skipped homeobox 2	protein-coding	0.065000	0.562189	-87(GCCCCTAAATGA,-,0.00)
mm_137573.1	chr17	27856377	27856577	+	1	NA	NA	NA	-30	NM_001080769	224648	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	0.150000	0.781095	
mm_150105.1	chr19	29499341	29499541	+	1	NA	NA	NA	22546	NR_015567	77779	Mm.458738	NR_015567	ENSMUSG00000097855	A930007I19Rik	-	RIKEN cDNA A930007I19 gene	ncRNA	0.020000	0.398010	
mm_19590.1	chr2	102050397	102050597	-	1	NA	NA	NA	135963	NM_178886	241576	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.005000	0.358209	-100(CCTCTTAAAGAA,+,0.00)
mm_117747.1	chr13	95892106	95892306	-	1	NA	NA	NA	-284	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.040000	0.616915	
mm_23527.1	chr3	60622060	60622260	+	1	NA	NA	NA	120981	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.025000	0.487562	
mm_36760.1	chr4	101356045	101356245	-	1	NA	NA	NA	103	NR_040708	77866	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0.130000	0.726368	
mm_163057.1	chr11	60931709	60931909	-	1	NA	NA	NA	58	NR_027800	24082	Mm.46270	NM_025293	ENSMUSG00000042549	Map2k3os	F3-1|Gm16516|Gtlf3a	mitogen-activated protein kinase kinase 3, opposite strand	ncRNA	0.050000	0.626866	
mm_164755.1	chr17	84116966	84117166	+	1	NA	NA	NA	38406	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.025000	0.477612	
mm_68984.1	chr7	126589733	126589933	-	1	NA	NA	NA	-4016	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.005000	0.393035	
mm_4812.1	chr1	185362926	185363126	+	1	NA	NA	NA	-69	NM_029735	107508	Mm.154511	NM_029735	ENSMUSG00000026615	Eprs	2410081F06Rik|3010002K18Rik|C79379|Qprs	glutamyl-prolyl-tRNA synthetase	protein-coding	0.135000	0.686567	
mm_38282.1	chr4	136890060	136890260	-	1	NA	NA	NA	2754	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.035000	0.582090	
mm_147496.1	chr18	47369040	47369240	-	1	NA	NA	NA	-270	NM_001311097	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.065000	0.661692	
mm_28789.1	chr3	95995746	95995946	-	1	NA	NA	NA	-7	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.180000	0.800995	
mm_20698.1	chr2	132923378	132923578	-	1	NA	NA	NA	22558	NM_198029	241639	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0.010000	0.577114	
mm_51162.1	chr6	70725721	70725921	+	1	NA	NA	NA	66354	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.005000	0.497512	
mm_68958.1	chr7	126566252	126566452	-	1	NA	NA	NA	14	NM_146200	56347	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.085000	0.651741	
mm_133974.1	chr16	4475042	4475242	-	1	NA	NA	NA	47911	NM_175347	106393	Mm.35811	NM_175347	ENSMUSG00000022519	Srl	9830004M20Rik|AW108387|sar	sarcalumenin	protein-coding	0.080000	0.597015	
mm_96244.1	chr11	62574400	62574600	+	1	NA	NA	NA	14	NM_011706	22368	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0.005000	0.472637	
mm_74691.1	chr8	15011670	15011870	-	1	NA	NA	NA	745	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.060000	0.646766	
mm_46701.1	chr5	110176356	110176556	-	1	NA	NA	NA	48	NR_040431	100504007	Mm.441495	NR_040430	ENSMUSG00000086247	Gm15787	OTTMUSG00000026209	predicted gene 15787	ncRNA	0.065000	0.567164	
mm_109373.1	chr12	109650059	109650259	+	1	NA	NA	NA	542	NR_046304	100861570		NR_046304	ENSMUSG00000084549	DQ267100	-	snoRNA DQ267100	snoRNA	0.000000	0.427861	
mm_146955.1	chr18	32835211	32835411	-	1	NA	NA	NA	-1914	NM_001110015	225348	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	0.010000	0.442786	
mm_161201.1	chr13	58183095	58183295	-	1	NA	NA	NA	25546	NM_198004	75731	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	0.025000	0.562189	
mm_165765.1	chr3	121456567	121456767	+	1	NA	NA	NA	30126	NM_028044	71994	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0.005000	0.497512	
mm_82371.1	chr9	14614892	14615092	-	1	NA	NA	NA	8	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.090000	0.736318	
mm_52262.1	chr6	108213836	108214036	+	1	NA	NA	NA	840	NM_010585	16438	Mm.227912	NM_010585	ENSMUSG00000030102	Itpr1	D6Pas2|ENSMUSG00000072853|Gm10429|IP3R 1|IP3R1|InsP3R|Ip3r|Itpr-1|P400|Pcp-1|Pcp1|insP3R1|opt|wblo	inositol 1,4,5-trisphosphate receptor 1	protein-coding	0.060000	0.537313	
mm_110025.1	chr12	16800434	16800634	-	1	NA	NA	NA	352	NM_015764	268527	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	0.045000	0.592040	
mm_87180.1	chr10	39133906	39134106	+	1	NA	NA	NA	-17	NM_028006	71924	Mm.297956	NM_028006	ENSMUSG00000019845	Tube1	2310061K05Rik|AI551343|Tube	epsilon-tubulin 1	protein-coding	0.095000	0.606965	
mm_3363.1	chr1	138273646	138273846	+	1	NA	NA	NA	8	NM_177397	338375	Mm.114424	NM_177397	ENSMUSG00000026394	Atp6v1g3	-	ATPase, H+ transporting, lysosomal V1 subunit G3	protein-coding	0.010000	0.487562	
mm_35543.1	chr4	41464754	41464954	-	1	NA	NA	NA	-6	NM_024241	109242	Mm.370288	NM_024241	ENSMUSG00000028438	Kif24	4933425J19Rik|9430029L23Rik	kinesin family member 24	protein-coding	0.110000	0.656716	
mm_119509.1	chr14	47384531	47384731	+	1	NA	NA	NA	10771	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.010000	0.383085	
mm_34919.1	chr4	155761057	155761257	+	1	NA	NA	NA	-35	NR_027971	70448	Mm.70636	NM_175157	ENSMUSG00000054514	Atad3aos	2610204G22Rik	ATPase family, AAA domain containing 3A, opposite strand	ncRNA	0.105000	0.656716	
mm_80928.1	chr9	102505867	102506067	+	1	NA	NA	NA	-171	NM_024291	16716	Mm.101692	NM_024291	ENSMUSG00000035606	Ky	CD1|D9Mgc44e|ky	kyphoscoliosis peptidase	protein-coding	0.090000	0.666667	
mm_106896.1	chr12	8012484	8012684	+	1	NA	NA	NA	34907	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.437811	
mm_14450.1	chr2	131127327	131127527	+	1	NA	NA	NA	15	NM_028306	72630	Mm.277465	NM_028306	ENSMUSG00000074793	Hspa12b	2700081N06Rik	heat shock protein 12B	protein-coding	0.090000	0.716418	
mm_73627.1	chr8	110703628	110703828	+	1	NA	NA	NA	-17748	NM_198625	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.010000	0.562189	
mm_38558.1	chr4	141644867	141645067	-	1	NA	NA	NA	19148	NM_001347237	69582	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	0.015000	0.482587	
mm_152220.1	chr19	8344480	8344680	-	1	NA	NA	NA	60525	NM_177002	319800	Mm.426083	NM_177002	ENSMUSG00000052562	Slc22a30	AA986766|C730048C13Rik|UST1R	solute carrier family 22, member 30	protein-coding	0.005000	0.388060	
mm_124288.1	chr14	103051423	103051623	-	1	NA	NA	NA	4511	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.025000	0.547264	
mm_102499.1	chr11	60418495	60418695	-	1	NA	NA	NA	1450	NM_025757	66771	Mm.29950	NM_025757	ENSMUSG00000018415	Gid4	4933439F18Rik	GID complex subunit 4, VID24 homolog	protein-coding	0.025000	0.577114	
mm_101055.1	chr11	8664574	8664774	-	1	NA	NA	NA	-139	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.095000	0.676617	
mm_4429.1	chr1	172506147	172506347	+	1	NA	NA	NA	6001	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.015000	0.507463	
mm_81249.1	chr9	107975546	107975746	+	1	NA	NA	NA	79	NM_023738	74153	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0.015000	0.527363	
mm_90072.1	chr10	116372763	116372963	+	1	NA	NA	NA	-45258	NR_028107	67342	Mm.245800	NM_026098	ENSMUSG00000020164	Kcnmb4os1	1700058G18Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1	ncRNA	0.030000	0.527363	
mm_151614.1	chr19	3900476	3900676	-	1	NA	NA	NA	4654	NM_016921	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.015000	0.472637	
mm_10286.1	chr2	10153544	10153744	+	1	NA	NA	NA	101	NM_172471	209378	Mm.313876	NM_172471	ENSMUSG00000025780	Itih5	4631408O11Rik|5430408M01Rik|E130106B02	inter-alpha (globulin) inhibitor H5	protein-coding	0.050000	0.616915	
mm_157368.1	chrX	37210950	37211150	-	1	NA	NA	NA	-9	NM_001033234	194854	Mm.296429	NM_001033234	ENSMUSG00000073243	Gm9	-	predicted gene 9	protein-coding	0.040000	0.542289	
mm_125136.1	chr15	30457760	30457960	+	1	NA	NA	NA	285267	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.015000	0.547264	
mm_98424.1	chr11	94644557	94644757	+	1	NA	NA	NA	9097	NM_177752	268465	Mm.358937	NM_177752	ENSMUSG00000039055	Eme1	6820428D13	essential meiotic structure-specific endonuclease 1	protein-coding	0.015000	0.507463	
mm_148755.1	chr19	6058141	6058341	+	1	NA	NA	NA	274	NM_001190436	14109	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	0.065000	0.567164	
mm_18854.1	chr2	75676542	75676742	-	1	NA	NA	NA	17352	NR_033513	627828	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	0.040000	0.577114	
mm_130189.1	chr15	93712641	93712841	-	1	NA	NA	NA	-116850	NM_001033217	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.020000	0.552239	
mm_171708.1	chr4	7629229	7629429	+	1	NA	NA	NA	68641	NR_040645	71510	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0.015000	0.532338	
mm_35638.1	chr4	43518347	43518547	-	1	NA	NA	NA	5107	NM_009416	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.025000	0.507463	-28(GTCTCTTAAAGT,-,0.00)
mm_107769.1	chr12	59130912	59131112	+	1	NA	NA	NA	-441	NM_001165253	338320	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.100000	0.631841	
mm_100391.1	chr11	119389880	119390080	+	1	NA	NA	NA	-492	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.085000	0.671642	
mm_34174.1	chr4	140426302	140426502	+	1	NA	NA	NA	-179591	NM_198610	230868	Mm.298731	NM_198610	ENSMUSG00000040972	Igsf21	BC055811|Gm141	immunoglobulin superfamily, member 21	protein-coding	0.020000	0.527363	
mm_27478.1	chr3	53657006	53657206	-	1	NA	NA	NA	249	NM_172862	242022	Mm.38378	NM_172862	ENSMUSG00000037016	Frem2	6030440P17Rik|8430406N05Rik|Gm409|b2b1562Clo|my|ne|nv1	Fras1 related extracellular matrix protein 2	protein-coding	0.070000	0.636816	
mm_42029.1	chr5	108279537	108279737	+	1	NA	NA	NA	10740	NM_026106	13486	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0.010000	0.303483	64(AGCTTTAAAAGT,-,0.00),65(GCTTTAAAAGTT,+,0.00),85(GCTTAAAAAGTG,+,0.00)
mm_80626.1	chr9	88956930	88957130	+	1	NA	NA	NA	110	NM_009742	12044	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0.005000	0.517413	
mm_44538.1	chr5	24540318	24540518	-	1	NA	NA	NA	39	NM_080444	117590	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	0.015000	0.552239	
mm_43109.1	chr5	124540665	124540865	+	1	NA	NA	NA	-26	NM_019770	56334	Mm.325307	NM_019770	ENSMUSG00000029390	Tmed2	1110032D12Rik|1810020N21Rik|Rnp24|Sid394|p24beta1	transmembrane p24 trafficking protein 2	protein-coding	0.165000	0.796020	
mm_114607.1	chr13	75839778	75839978	+	1	NA	NA	NA	-8	NM_053108	93692	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.020000	0.502488	-57(GCCCTTTAAAAC,-,0.00),-55(CCTTTAAAACTG,+,0.00)
mm_169738.1	chr15	83930461	83930661	-	1	NA	NA	NA	5534	NM_001161628	77627	Mm.196288	NM_029946	ENSMUSG00000022441	Efcab6	4931407K02Rik|4932408N08Rik|bM150J22.2|mKIAA1672	EF-hand calcium binding domain 6	protein-coding	0.035000	0.552239	
mm_89695.1	chr10	97606783	97606983	+	1	NA	NA	NA	-322	NM_008438	16545	Mm.6228	NM_008438	ENSMUSG00000019932	Kera	CNA2|SLRR2B	keratocan	protein-coding	0.010000	0.323383	87(GGACTTAAAAGA,-,0.00)
mm_32635.1	chr4	115000125	115000325	+	1	NA	NA	NA	107	NM_001304555	20460	Mm.3988	NM_009185	ENSMUSG00000028718	Stil	Sil	Scl/Tal1 interrupting locus	protein-coding	0.095000	0.646766	
mm_72467.1	chr8	83348366	83348566	+	1	NA	NA	NA	-6	NM_026233	67555	Mm.84115	NM_026233	ENSMUSG00000035057	Mgat4d	4933434I20Rik|GnT1IP|GnT1IP-L	MGAT4 family, member C	protein-coding	0.065000	0.592040	
mm_52451.1	chr6	113681818	113682018	+	1	NA	NA	NA	-15132	NM_001347356	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.010000	0.522388	
mm_126361.1	chr15	80059471	80059671	+	1	NA	NA	NA	19008	NR_028282	100302601		NR_028282	ENSMUSG00000077734	Snord83b	MBII-10	small nucleolar RNA, C/D box 83B	snoRNA	0.015000	0.512438	
mm_121654.1	chr14	10453355	10453555	-	1	NA	NA	NA	3	NM_001308286	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.030000	0.542289	
mm_36846.1	chr4	106678838	106679038	-	1	NA	NA	NA	6	NM_028209	72354	Mm.25806	NM_028209	ENSMUSG00000025413	Ttc4	2810002P21Rik|AF007005|L62	tetratricopeptide repeat domain 4	protein-coding	0.090000	0.676617	
mm_122180.1	chr14	31557788	31557988	-	1	NA	NA	NA	19495	NM_009937	382864	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.040000	0.567164	
mm_64766.1	chr7	4971675	4971875	-	1	NA	NA	NA	-814	NM_001200041	381835	Mm.297828	NM_001200041	ENSMUSG00000085272	Sbk3	Gm1078|Sgk110	SH3 domain binding kinase family, member 3	protein-coding	0.005000	0.527363	
mm_97421.1	chr11	78032256	78032456	+	1	NA	NA	NA	43	NM_183286	70451	Mm.390342	NM_183286	ENSMUSG00000020834	Dhrs13	2610209N15Rik	dehydrogenase/reductase (SDR family) member 13	protein-coding	0.125000	0.746269	
mm_84932.1	chr9	82907940	82908140	-	1	NA	NA	NA	67449	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.015000	0.348259	
mm_112907.1	chr13	20902919	20903119	+	1	NA	NA	NA	108906	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.427861	
mm_38474.1	chr4	140665780	140665980	-	1	NA	NA	NA	7	NM_001290803	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.030000	0.636816	
mm_146625.1	chr18	10181241	10181441	-	1	NA	NA	NA	451	NM_009071	19877	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.070000	0.562189	
mm_26578.1	chr3	147389616	147389816	+	1	NA	NA	NA	537349	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.005000	0.447761	
mm_35312.1	chr4	25281748	25281948	-	1	NA	NA	NA	-27	NM_026194	67490	Mm.226295	NM_026194	ENSMUSG00000040359	Ufl1	1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776	UFM1 specific ligase 1	protein-coding	0.100000	0.651741	
mm_113767.1	chr13	44819863	44820063	+	1	NA	NA	NA	88692	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.005000	0.378109	11(GAGTTTTAAAGC,-,0.00)
mm_110135.1	chr12	26447106	26447306	-	1	NA	NA	NA	9246	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.363184	
mm_25953.1	chr3	132085190	132085390	+	1	NA	NA	NA	-2	NM_020265	56811	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.045000	0.577114	-33(AGCTATAAAAAG,-,0.00)
mm_164770.1	chr17	87107205	87107405	+	1	NA	NA	NA	-374	NM_019654	56468	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0.090000	0.701493	
mm_7896.1	chr1	133424339	133424539	-	1	NA	NA	NA	-227	NM_011439	20668	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	0.085000	0.691542	
mm_131333.1	chr16	13322404	13322604	+	1	NA	NA	NA	-35917	NM_153588	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.010000	0.358209	
mm_7543.1	chr1	124504050	124504250	-	1	NA	NA	NA	-458591	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.402985	
mm_51622.1	chr6	85431928	85432128	+	1	NA	NA	NA	52	NM_144918	232187	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	0.095000	0.686567	
mm_87824.1	chr10	60349257	60349457	+	1	NA	NA	NA	2506	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.015000	0.552239	
mm_77680.1	chr8	125569712	125569912	-	1	NA	NA	NA	-14826	NR_015535	75930	Mm.195663	NR_015535	ENSMUSG00000110629	4930567H12Rik	4930579P07Rik	RIKEN cDNA 4930567H12 gene	ncRNA	0.195000	0.835821	
mm_62483.1	chr7	101881209	101881409	+	1	NA	NA	NA	-16	NM_001291353	75430	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.015000	0.467662	
mm_107916.1	chr12	71016574	71016774	+	1	NA	NA	NA	707	NM_001081195	238247	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|MmRBBP1|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.135000	0.800995	
mm_91339.1	chr10	26078860	26079060	-	1	NA	NA	NA	92	NM_029881	77220	Mm.266260	NM_029881	ENSMUSG00000049420	Tmem200a	C030003D03Rik	transmembrane protein 200A	protein-coding	0.070000	0.592040	
mm_85275.1	chr9	99436655	99436855	-	1	NA	NA	NA	-43	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.155000	0.781095	
mm_61451.1	chr7	75586167	75586367	+	1	NA	NA	NA	130733	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.040000	0.577114	
mm_78329.1	chr9	25252411	25252611	+	1	NA	NA	NA	72	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.150000	0.721393	
mm_111965.1	chr12	109615468	109615668	-	1	NA	NA	NA	-2690	NR_029918	723854		NR_029918	ENSMUSG00000065433	Mir370	Mirn370|mir-370|mmu-mir-370	microRNA 370	ncRNA	0.020000	0.552239	
mm_35410.1	chr4	34805786	34805986	-	1	NA	NA	NA	-27520	NM_025471	66291	Mm.28071	NM_025471	ENSMUSG00000028295	Smim8	1810030N24Rik|2810406B13Rik	small integral membrane protein 8	protein-coding	0.015000	0.373134	
mm_111957.1	chr12	109560469	109560669	-	1	NA	NA	NA	-3123	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.020000	0.457711	
mm_154611.1	chrX	7652377	7652577	+	1	NA	NA	NA	-4902	NM_001290624	54630	Mm.232232	NM_175097	ENSMUSG00000031145	Prickle3	Lmo6|Sfc16	prickle planar cell polarity protein 3	protein-coding	0.005000	0.522388	-82(GAGCCTAAAAGG,-,0.00)
mm_168505.1	chr1	153486767	153486967	-	1	NA	NA	NA	793	NM_007842	13211	Mm.20000	NM_007842	ENSMUSG00000042699	Dhx9	AI326842|Ddx9|HEL-5|NDHII|RHA|mHEL-5	DEAH (Asp-Glu-Ala-His) box polypeptide 9	protein-coding	0.035000	0.532338	
mm_61193.1	chr7	63905377	63905577	+	1	NA	NA	NA	-11380	NM_001256311	381994	Mm.425466	NM_001256311	ENSMUSG00000095061	E030018B13Rik	Gm1697	RIKEN cDNA E030018B13 gene	protein-coding	0.010000	0.527363	-32(CTCTTTAAGAGC,-,0.00),-31(TCTTTAAGAGCA,+,0.00)
mm_72537.1	chr8	83997015	83997215	+	1	NA	NA	NA	-557	NM_001081415	666704	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.135000	0.766169	-32(CTCCTTAAAAAG,-,0.00),-30(CCTTAAAAAGCG,+,0.00),64(CACCTTAAAAGC,-,0.00),66(CCTTAAAAGCGG,+,0.00)
mm_2885.1	chr1	131846642	131846842	+	1	NA	NA	NA	18730	NM_173865	98396	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	0.005000	0.522388	
mm_146681.1	chr18	12847730	12847930	-	1	NA	NA	NA	14883	NM_001252493	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.005000	0.303483	-54(TCTTAAATAGCA,+,0.00)
mm_116987.1	chr13	56426405	56426605	-	1	NA	NA	NA	-11850	NM_177809	328258	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	0.005000	0.517413	
mm_14760.1	chr2	145167413	145167613	+	1	NA	NA	NA	-75098	NM_053195	94249	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.115000	0.741294	
mm_79700.1	chr9	60837967	60838167	+	1	NA	NA	NA	43519	NM_028283	72565	Mm.68819	NM_028283	ENSMUSG00000034485	Uaca	2700059D02Rik|nucling	uveal autoantigen with coiled-coil domains and ankyrin repeats	protein-coding	0.035000	0.537313	
mm_57922.1	chr6	134243425	134243625	-	1	NA	NA	NA	-152804	NM_025778	66813	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.010000	0.497512	
mm_137949.1	chr17	32879011	32879211	+	1	NA	NA	NA	12492	NM_207245	240066	Mm.26636	NM_207245	ENSMUSG00000095325	Zfp870	AI173952	zinc finger protein 870	protein-coding	0.025000	0.542289	
mm_143138.1	chr17	57218562	57218762	-	1	NA	NA	NA	-1434	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.025000	0.601990	
mm_13776.1	chr2	118745688	118745888	+	1	NA	NA	NA	30	NM_001301269	100043272	Mm.398072	NM_001301269	ENSMUSG00000074918	Inafm2	5430417L22Rik|ENSMUSG00000074918	InaF motif containing 2	protein-coding	0.165000	0.830846	
mm_150320.1	chr19	34573854	34574054	+	1	NA	NA	NA	-9575	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.010000	0.402985	
mm_74521.1	chr8	9207275	9207475	-	1	NA	NA	NA	62706	NR_073360	74688	Mm.159298	NR_073360	ENSMUSG00000109215	4930453L07Rik	-	RIKEN cDNA 4930453L07 gene	ncRNA	0.035000	0.383085	
mm_37750.1	chr4	129622849	129623049	-	1	NA	NA	NA	959	NM_025455	66264	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	0.000000	0.547264	
mm_69821.1	chr7	141265629	141265829	-	1	NA	NA	NA	695	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.010000	0.452736	
mm_91940.1	chr10	60816880	60817080	-	1	NA	NA	NA	14601	NM_029770	107449	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0.025000	0.532338	
mm_61434.1	chr7	73852339	73852539	+	1	NA	NA	NA	26515	NR_102375	100861851		NR_102375		Gm21269	-	predicted gene, 21269	ncRNA	0.025000	0.492537	
mm_12154.1	chr2	62046398	62046598	+	1	NA	NA	NA	-17	NM_001242382	94229	Mm.314497	NM_033552	ENSMUSG00000026904	Slc4a10	NCBE|mKIAA4136	solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	protein-coding	0.025000	0.557214	
mm_6418.1	chr1	73905118	73905318	-	1	NA	NA	NA	-40752	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.015000	0.497512	
mm_166275.1	chr5	90690021	90690221	+	1	NA	NA	NA	-49594	NM_001310656	73246	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.005000	0.462687	
mm_111109.1	chr12	80958034	80958234	-	1	NA	NA	NA	9945	NM_011387	20493	Mm.486361	NM_011387	ENSMUSG00000021135	Slc10a1	Ntcp	solute carrier family 10 (sodium/bile acid cotransporter family), member 1	protein-coding	0.005000	0.517413	
mm_78637.1	chr9	40192223	40192423	+	1	NA	NA	NA	7	NM_030713	80902	Mm.132196	NM_030713	ENSMUSG00000025602	Zfp202	C130037E22Rik|Znf202	zinc finger protein 202	protein-coding	0.100000	0.701493	
mm_129829.1	chr15	83133195	83133395	-	1	NA	NA	NA	-10494	NM_029101	74778	Mm.30056	NM_029101	ENSMUSG00000018040	Rrp7a	1110014J01Rik|AA408146|Kheg1	ribosomal RNA processing 7 homolog A (S. cerevisiae)	protein-coding	0.020000	0.532338	
mm_87941.1	chr10	62895666	62895866	+	1	NA	NA	NA	-15752	NM_001253857	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.010000	0.442786	
mm_56724.1	chr6	115639095	115639295	-	1	NA	NA	NA	37257	NM_023290	67027	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	0.025000	0.467662	-57(CCTTTAAAATAG,+,0.00)
mm_112818.1	chr13	20797577	20797777	+	1	NA	NA	NA	3564	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.015000	0.472637	
mm_26691.1	chr3	156703811	156704011	+	1	NA	NA	NA	142117	NM_001039094	320840	Mm.317293	NM_177274	ENSMUSG00000040037	Negr1	5330422G01Rik|KILON|Ntra	neuronal growth regulator 1	protein-coding	0.005000	0.368159	
mm_137851.1	chr17	31069799	31069999	+	1	NA	NA	NA	12205	NM_009593	11307	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding	0.010000	0.517413	
mm_158978.1	chr1	121528487	121528687	-	1	NA	NA	NA	-122	NM_010483	15564	Mm.4833	NM_010483	ENSMUSG00000050534	Htr5b	5-Ht5b	5-hydroxytryptamine (serotonin) receptor 5B	protein-coding	0.045000	0.562189	
mm_32516.1	chr4	108633000	108633200	+	1	NA	NA	NA	13144	NM_177045	319965	Mm.151129	NM_177045	ENSMUSG00000028582	Cc2d1b	A830039B04Rik|Freud2	coiled-coil and C2 domain containing 1B	protein-coding	0.015000	0.522388	
mm_149729.1	chr19	21839862	21840062	+	1	NA	NA	NA	61622	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.010000	0.343284	
mm_42307.1	chr5	114785686	114785886	+	1	NA	NA	NA	10646	NM_026718	68420	Mm.275554	NM_026718	ENSMUSG00000041870	Ankrd13a	1100001D10Rik|ANKRD13|AU046136	ankyrin repeat domain 13a	protein-coding	0.045000	0.562189	
mm_82393.1	chr9	14676138	14676338	-	1	NA	NA	NA	-61238	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.000000	0.427861	
mm_69281.1	chr7	128005060	128005260	-	1	NA	NA	NA	782	NM_001079932	434246	Mm.389924	NM_001079932	ENSMUSG00000042828	Trim72	BC067209|MG53	tripartite motif-containing 72	protein-coding	0.015000	0.517413	
mm_156267.1	chrX	136832037	136832237	+	1	NA	NA	NA	9391	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.040000	0.562189	
mm_83450.1	chr9	45055234	45055434	-	1	NA	NA	NA	153	NM_001093749	319742	Mm.49611	NM_176993	ENSMUSG00000070305	Mpzl3	5430427F17Rik|A530065I17Rik|rc	myelin protein zero-like 3	protein-coding	0.060000	0.641791	
mm_83952.1	chr9	56927884	56928084	-	1	NA	NA	NA	387	NM_175483	235406	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	0.020000	0.497512	
mm_159833.1	chr5	128600981	128601181	+	1	NA	NA	NA	-25	NM_175284	93897	Mm.197628	NM_175284	ENSMUSG00000081683	Fzd10	Fz-10	frizzled class receptor 10	protein-coding	0.160000	0.791045	
mm_151870.1	chr19	5797927	5798127	-	1	NA	NA	NA	-2046	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.010000	0.422886	31(GAGTTTAAATGC,-,0.00)
mm_104624.1	chr11	97309944	97310144	-	1	NA	NA	NA	-5672	NM_025927	67036	Mm.5381	NM_025927	ENSMUSG00000018882	Mrpl45	2600005P05Rik|AU043542|R75241	mitochondrial ribosomal protein L45	protein-coding	0.045000	0.482587	
mm_111653.1	chr12	102818247	102818447	-	1	NA	NA	NA	60059	NM_172806	238386	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	0.005000	0.368159	
mm_108546.1	chr12	84361943	84362143	+	1	NA	NA	NA	75	NM_172582	217707	Mm.280062	NM_172582	ENSMUSG00000021235	Coq6	5930427M12Rik|AW742344	coenzyme Q6 monooxygenase	protein-coding	0.070000	0.626866	
mm_170636.1	chr19	8725726	8725926	+	1	NA	NA	NA	-40	NR_004445	100127111	Mm.292489	NR_004445	ENSMUSG00000065087	Snord22	Rnu22|U22	small nucleolar RNA, C/D box 22	snoRNA	0.005000	0.368159	-78(GCATTAATGGCC,+,0.00)
mm_16857.1	chr2	11646444	11646644	-	1	NA	NA	NA	3752	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.000000	0.467662	
mm_121101.1	chr14	99759511	99759711	+	1	NA	NA	NA	390185	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.010000	0.502488	-33(AGCTTTAAAAGG,-,0.00),-32(GCTTTAAAAGGG,+,0.00),-31(CTTTAAAAGGGC,+,0.00)
mm_55649.1	chr6	72366858	72367058	-	1	NA	NA	NA	14	NM_001331167	66510	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0.005000	0.452736	
mm_144595.1	chr18	32162994	32163194	+	1	NA	NA	NA	5	NM_011946	26405	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0.180000	0.746269	
mm_117809.1	chr13	97711106	97711306	-	1	NA	NA	NA	151206	NR_046157	328314	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.015000	0.482587	-10(TGTTCTAAAAGG,-,0.00)
mm_157514.1	chrX	49779089	49779289	-	1	NA	NA	NA	9054	NM_183336	209268	Mm.110505	NM_177591	ENSMUSG00000031111	Igsf1	5330413N23|5530402E03|AI747649|InhBP/p120|mKIAA0364	immunoglobulin superfamily, member 1	protein-coding	0.010000	0.457711	-88(GTCTCTATAAGG,-,0.00),-11(CCTTTTCTGGCA,+,0.00)
mm_62095.1	chr7	96209857	96210057	+	1	NA	NA	NA	-680	NM_011858	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.085000	0.651741	
mm_172514.1	chr7	76833154	76833354	+	1	NA	NA	NA	603367	NM_001199224	244071	Mm.322829	NM_172902	ENSMUSG00000025754	Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding	0.065000	0.636816	
mm_82723.1	chr9	25101418	25101618	-	1	NA	NA	NA	50263	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.035000	0.482587	
mm_32563.1	chr4	109676533	109676733	+	1	NA	NA	NA	6	NM_007983	14084	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	0.125000	0.726368	
mm_23645.1	chr3	67430043	67430243	+	1	NA	NA	NA	28	NM_138591	28030	Mm.122466	NM_138591	ENSMUSG00000027774	Gfm1	AW545374|D3Wsu133e|Gfm	G elongation factor, mitochondrial 1	protein-coding	0.075000	0.646766	
mm_160417.1	chr8	83608664	83608864	+	1	NA	NA	NA	216	NM_001308227	81489	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.090000	0.631841	
mm_119108.1	chr14	31001339	31001539	+	1	NA	NA	NA	6	NM_029626	76485	Mm.8766	NM_029626	ENSMUSG00000021916	Glt8d1	2410004H05Rik|5430414N14Rik|AI450005	glycosyltransferase 8 domain containing 1	protein-coding	0.100000	0.671642	
mm_5064.1	chr1	195013524	195013724	+	1	NA	NA	NA	-3775	NR_015566	320977	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0.005000	0.308458	
mm_141064.1	chr17	25792264	25792464	-	1	NA	NA	NA	23	NM_001285982	214917	Mm.26783	NM_145410	ENSMUSG00000057411	Fam173a	-	family with sequence similarity 173, member A	protein-coding	0.075000	0.616915	
mm_74961.1	chr8	26119198	26119398	-	1	NA	NA	NA	-74	NM_207659	320191	Mm.334464	NM_207659	ENSMUSG00000037234	Hook3	5830454D03Rik|AI317159|E330005F07Rik	hook microtubule tethering protein 3	protein-coding	0.190000	0.815920	
mm_94986.1	chr11	31851275	31851475	+	1	NA	NA	NA	-19565	NM_001290676	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.010000	0.457711	-34(CCCTTTAAAATC,+,0.00),56(CTCTCTAAAGAG,-,0.00)
mm_80217.1	chr9	72532143	72532343	+	1	NA	NA	NA	3	NM_001033536	319758	Mm.32081	NM_001033536	ENSMUSG00000037674	Rfx7	2510005N23Rik|9930116O05Rik|D130086K05Rik|Rfxdc2	regulatory factor X, 7	protein-coding	0.175000	0.835821	
mm_144946.1	chr18	37806394	37806594	+	1	NA	NA	NA	84	NM_033581	93706	Mm.247203	NM_033581	ENSMUSG00000102918	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding	0.075000	0.636816	
mm_119889.1	chr14	54936367	54936567	+	1	NA	NA	NA	-3	NM_026066	67272	Mm.41614	NM_026066	ENSMUSG00000040759	Cmtm5	1500005P16Rik|2900052H21Rik|Cklfsf5	CKLF-like MARVEL transmembrane domain containing 5	protein-coding	0.005000	0.621891	
mm_140359.1	chr17	86831444	86831644	+	1	NA	NA	NA	77680	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.015000	0.502488	
mm_46926.1	chr5	114690783	114690983	-	1	NA	NA	NA	52	NM_019821	56356	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0.145000	0.766169	
mm_2438.1	chr1	97770131	97770331	+	1	NA	NA	NA	59	NM_026250	252876	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding	0.055000	0.467662	
mm_20158.1	chr2	122125721	122125921	-	1	NA	NA	NA	-7435	NM_145531	214585	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	spastic paraplegia 11	protein-coding	0.020000	0.537313	-80(TGGCCTAAAAGG,-,0.00)
mm_78983.1	chr9	45389822	45390022	+	1	NA	NA	NA	-9787	NR_028499	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.025000	0.562189	
mm_41044.1	chr5	86092113	86092313	+	1	NA	NA	NA	20467	NM_001310639	56792	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.005000	0.432836	
mm_75563.1	chr8	58912221	58912421	-	1	NA	NA	NA	566	NM_173411	234290	Mm.39244	NM_173411	ENSMUSG00000049946	BC030500	-	cDNA sequence BC030500	protein-coding	0.030000	0.557214	
mm_61584.1	chr7	79869535	79869735	+	1	NA	NA	NA	-27283	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.020000	0.472637	
mm_58342.1	chr6	147086930	147087130	-	1	NA	NA	NA	2	NM_001034903	545893	Mm.224739	NM_001034903	ENSMUSG00000072662	Mansc4	A430079E08|EG545893|Gm5887	MANSC domain containing 4	protein-coding	0.030000	0.606965	
mm_125145.1	chr15	30646136	30646336	+	1	NA	NA	NA	-392890	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.020000	0.318408	-90(CTTTTAATAACC,+,0.00)
mm_55256.1	chr6	53068509	53068709	-	1	NA	NA	NA	15	NM_173406	231986	Mm.386865	NM_173406	ENSMUSG00000063568	Jazf1	AI591476|C820002C15|Jaz1|Tip27	JAZF zinc finger 1	protein-coding	0.135000	0.766169	
mm_117779.1	chr13	96671518	96671718	-	1	NA	NA	NA	-682	NM_008255	15357	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0.010000	0.492537	
mm_9742.1	chr1	180365184	180365384	-	1	NA	NA	NA	-34735	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.060000	0.616915	
mm_64319.1	chr7	141949552	141949752	+	1	NA	NA	NA	-99	NM_001009930	75770	Mm.274868	NM_029426	ENSMUSG00000053046	Brsk2	4833424K13Rik|SAD-A|SADA	BR serine/threonine kinase 2	protein-coding	0.100000	0.671642	-77(GCTCTTAGAGAC,+,0.00)
mm_117421.1	chr13	74350127	74350327	-	1	NA	NA	NA	13	NM_023281	66945	Mm.158231	NM_023281	ENSMUSG00000021577	Sdha	1500032O14Rik|2310034D06Rik|4921513A11|C81073|FP|SDH2|SDHF	succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	protein-coding	0.120000	0.666667	
mm_60048.1	chr7	31059813	31060013	+	1	NA	NA	NA	-22	NM_144556	243914	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	0.015000	0.537313	
mm_727.1	chr1	42954038	42954238	+	1	NA	NA	NA	1266	NM_053107	93690	Mm.444976	NM_053107	ENSMUSG00000041907	Gpr45	9230112G11Rik|AW046772	G protein-coupled receptor 45	protein-coding	0.005000	0.368159	
mm_32978.1	chr4	120134341	120134541	+	1	NA	NA	NA	-26765	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.015000	0.532338	
mm_14642.1	chr2	136891508	136891708	+	1	NA	NA	NA	-202	NM_001286983	59030	Mm.272570	NM_021527	ENSMUSG00000027274	Mkks	1300013E18Rik|AI463362|AI957237|Bbs6	McKusick-Kaufman syndrome	protein-coding	0.060000	0.542289	
mm_98735.1	chr11	96353034	96353234	+	1	NA	NA	NA	1502	NM_134032	103889	Mm.281153	NM_134032	ENSMUSG00000075588	Hoxb2	AI894218|Hox-2.8|Hoxbes2	homeobox B2	protein-coding	0.110000	0.636816	
mm_26225.1	chr3	138903057	138903257	+	1	NA	NA	NA	160949	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.010000	0.358209	
mm_19734.1	chr2	104495002	104495202	-	1	NA	NA	NA	-613	NM_001145824	15259	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.025000	0.447761	
mm_93500.1	chr10	112928763	112928963	-	1	NA	NA	NA	163	NM_001033474	382423	Mm.431239	NM_001033474	ENSMUSG00000074748	Atxn7l3b	4921506J03Rik|6230409E21Rik|AI315132|ENSMUSG00000074747	ataxin 7-like 3B	protein-coding	0.160000	0.721393	
mm_21654.1	chr2	164334904	164335104	-	1	NA	NA	NA	2239	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.010000	0.512438	-31(TCCTTTATGGAG,+,0.00)
mm_109614.1	chr12	112760556	112760756	+	1	NA	NA	NA	1	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.015000	0.582090	
mm_67795.1	chr7	97737881	97738081	-	1	NA	NA	NA	266	NM_175105	66333	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.100000	0.721393	
mm_10711.1	chr2	22774378	22774578	+	1	NA	NA	NA	151	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.055000	0.646766	
mm_56650.1	chr6	113377772	113377972	-	1	NA	NA	NA	-241	NM_026552	68089	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	0.070000	0.577114	
mm_159102.1	chr2	37201149	37201349	+	1	NA	NA	NA	6	NM_146662	258656	Mm.377619	NM_146662	ENSMUSG00000059429	Olfr365	MOR138-1	olfactory receptor 365	protein-coding	0.000000	0.437811	
mm_35619.1	chr4	43452457	43452657	-	1	NA	NA	NA	2069	NM_001110320	12517	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.025000	0.572139	
mm_145360.1	chr18	56676578	56676778	+	1	NA	NA	NA	-31135	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.020000	0.542289	
mm_119253.1	chr14	33923595	33923795	+	1	NA	NA	NA	108	NM_145741	14560	Mm.432071	NM_145741	ENSMUSG00000021943	Gdf10	Bmp3b	growth differentiation factor 10	protein-coding	0.140000	0.716418	
mm_122760.1	chr14	54231336	54231536	-	1	NA	NA	NA	22493	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.040000	0.572139	
mm_94123.1	chr10	128669134	128669334	-	1	NA	NA	NA	4684	NM_173733	211389	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	0.075000	0.691542	
mm_43964.1	chr5	145280387	145280587	+	1	NA	NA	NA	-2856	NM_001081431	666311	Mm.260773	NM_001081431	ENSMUSG00000070420	Zscan25	EG666311|Zfp498	zinc finger and SCAN domain containing 25	protein-coding	0.090000	0.696517	
mm_24409.1	chr3	90464620	90464820	+	1	NA	NA	NA	1146	NM_008727	18160	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.055000	0.636816	-30(GACTCTAAGAGG,-,0.00)
mm_78613.1	chr9	37545133	37545333	+	1	NA	NA	NA	5978	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.050000	0.616915	
mm_154465.1	chrM	3312	3512	-	1	NA	NA	NA	NA	NA									0.040000	0.422886	
mm_55492.1	chr6	69576419	69576619	-	1	NA	NA	NA	-249345	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.358209	
mm_108173.1	chr12	76404427	76404627	+	1	NA	NA	NA	157	NM_008301	15512	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0.085000	0.592040	
mm_111207.1	chr12	84382463	84382663	-	1	NA	NA	NA	18371	NM_001286058	12499	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0.015000	0.542289	
mm_91508.1	chr10	37136860	37137060	-	1	NA	NA	NA	1966	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.120000	0.681592	
mm_16580.1	chr2	3512850	3513050	-	1	NA	NA	NA	-115	NM_177647	227526	Mm.211455	NM_177647	ENSMUSG00000039496	Cdnf	9330140G23|Armetl1	cerebral dopamine neurotrophic factor	protein-coding	0.075000	0.572139	
mm_33841.1	chr4	135759630	135759830	+	1	NA	NA	NA	15	NM_001085509	242702	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	0.025000	0.542289	
mm_81031.1	chr9	104569641	104569841	+	1	NA	NA	NA	-47	NM_028719	74020	Mm.326240	NM_028719	ENSMUSG00000032564	Cpne4	3632411M23Rik|4933406O10Rik	copine IV	protein-coding	0.025000	0.606965	
mm_93409.1	chr10	107912342	107912542	-	1	NA	NA	NA	-308	NM_001177567	628870	Mm.336090	NM_001177567	ENSMUSG00000091455	Otogl	EG628870|Gm6924	otogelin-like	protein-coding	0.010000	0.447761	-1(GTGTATTAATGG,-,0.00)
mm_11333.1	chr2	30466282	30466482	+	1	NA	NA	NA	7817	NM_030244	72500	Mm.295464	NM_030244	ENSMUSG00000089762	Ier5l	2610524G09Rik	immediate early response 5-like	protein-coding	0.000000	0.402985	-57(GGCTAGAAAAAG,-,0.00)
mm_30450.1	chr3	153852339	153852539	-	1	NA	NA	NA	-15	NR_040373	72317	Mm.440147	NR_040373	ENSMUSG00000086438	Asb17os	2510003D18Rik	ankyrin repeat and SOCS box-containing 17, opposite strand	ncRNA	0.025000	0.532338	-80(GTGCTTAAAAGG,-,0.00),-78(GCTTAAAAGGGT,+,0.00)
mm_106652.1	chr11	121081062	121081262	-	1	NA	NA	NA	-23	NM_145373	209588	Mm.69553	NM_145373	ENSMUSG00000025165	Sectm1a	BC010462	secreted and transmembrane 1A	protein-coding	0.010000	0.552239	
mm_33364.1	chr4	129512407	129512607	+	1	NA	NA	NA	-1074	NM_010807	17357	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0.010000	0.487562	
mm_72169.1	chr8	72255664	72255864	+	1	NA	NA	NA	15746	NM_007456	11767	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	0.015000	0.552239	
mm_10127.1	chr2	3770578	3770778	+	1	NA	NA	NA	57220	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.005000	0.492537	-55(TCTTTTAGACAG,+,0.00)
mm_68702.1	chr7	119642343	119642543	-	1	NA	NA	NA	24615	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.010000	0.472637	35(TGCTCTTAAAAG,-,0.00),36(GCTCTTAAAAGC,-,0.00)
mm_109488.1	chr12	111442441	111442641	+	1	NA	NA	NA	-120	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.080000	0.651741	
mm_10681.1	chr2	22227461	22227661	+	1	NA	NA	NA	58	NM_148413	667663	Mm.330033	NM_148413	ENSMUSG00000025716	Myo3a	9030416P08Rik	myosin IIIA	protein-coding	0.070000	0.681592	
mm_11886.1	chr2	49700855	49701055	+	1	NA	NA	NA	81641	NM_008449	16574	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding	0.020000	0.447761	-8(TCTTAAATAGAA,+,0.00)
mm_4772.1	chr1	182679837	182680037	+	1	NA	NA	NA	69243	NM_001033547	433386	Mm.338103	NM_001033547	ENSMUSG00000043429	Ccdc185	4922505E12Rik	coiled-coil domain containing 185	protein-coding	0.015000	0.507463	21(GCTTTTAAGGAA,+,0.00)
mm_33626.1	chr4	132794881	132795081	+	1	NA	NA	NA	1383	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.030000	0.537313	
mm_121030.1	chr14	79769792	79769992	+	1	NA	NA	NA	1420	NM_001042726	18530	Mm.390715	NM_021543	ENSMUSG00000036422	Pcdh8	1700080P15Rik|Papc	protocadherin 8	protein-coding	0.120000	0.706468	
mm_161390.1	chr14	79350607	79350807	-	1	NA	NA	NA	39961	NM_025832	66897	Mm.24425	NM_025832	ENSMUSG00000022020	Naa16	1300019C06Rik|Narg1l	N(alpha)-acetyltransferase 16, NatA auxiliary subunit	protein-coding	0.030000	0.577114	
mm_87610.1	chr10	57784917	57785117	+	1	NA	NA	NA	94	NM_021272	12140	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.025000	0.447761	
mm_103296.1	chr11	72474956	72475156	-	1	NA	NA	NA	-29	NM_001276383	216892	Mm.212812	NM_153060	ENSMUSG00000040447	Spns2	-	spinster homolog 2	protein-coding	0.005000	0.527363	
mm_153175.1	chr19	34493764	34493964	-	1	NA	NA	NA	-18729	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.020000	0.393035	
mm_32854.1	chr4	118229680	118229880	+	1	NA	NA	NA	-19216	NR_106085	102466820		NR_106085	ENSMUSG00000098596	Mir7226	Gm27630|mmu-mir-7226	microRNA 7226	ncRNA	0.000000	0.502488	
mm_120627.1	chr14	70461666	70461866	+	1	NA	NA	NA	4249	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.015000	0.557214	
mm_80477.1	chr9	78198030	78198230	+	1	NA	NA	NA	6164	NM_010357	14860	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	0.040000	0.522388	
mm_71342.1	chr8	45627723	45627923	+	1	NA	NA	NA	72	NM_001310707	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.025000	0.497512	-45(GCATTTAAAAAG,-,0.00)
mm_170154.1	chr17	45571779	45571979	-	1	NA	NA	NA	1382	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.010000	0.427861	
mm_17007.1	chr2	18844131	18844331	-	1	NA	NA	NA	-42413	NR_131254	66774	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.045000	0.492537	
mm_162397.1	chr1	82587103	82587303	+	1	NA	NA	NA	282	NM_007734	12828	Mm.389135	NM_007734	ENSMUSG00000079465	Col4a3	[a]3(IV)|alpha3(IV)	collagen, type IV, alpha 3	protein-coding	0.060000	0.626866	
mm_37004.1	chr4	111477399	111477599	-	1	NA	NA	NA	62493	NM_026279	67621	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0.005000	0.412935	
mm_160864.1	chr11	61022632	61022832	+	1	NA	NA	NA	168	NM_001267593	16515	Mm.4970	NM_010603	ENSMUSG00000042529	Kcnj12	IRK-2|IRK2|Kir2.2|MB-IRK2	potassium inwardly-rectifying channel, subfamily J, member 12	protein-coding	0.165000	0.800995	
mm_116555.1	chr13	46727541	46727741	-	1	NA	NA	NA	208	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.145000	0.736318	
mm_151676.1	chr19	4201480	4201680	-	1	NA	NA	NA	23	NM_011237	19367	Mm.277629	NM_011237	ENSMUSG00000024824	Rad9a	Rad9	RAD9 checkpoint clamp component A	protein-coding	0.070000	0.567164	
mm_12856.1	chr2	83724316	83724516	+	1	NA	NA	NA	19	NM_008402	16410	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.120000	0.746269	
mm_147666.1	chr18	60613444	60613644	-	1	NA	NA	NA	-3440	NM_001109975	104027	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	0.025000	0.487562	
mm_38469.1	chr4	140648730	140648930	-	1	NA	NA	NA	-74	NM_172415	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.090000	0.746269	
mm_92557.1	chr10	79788854	79789054	-	1	NA	NA	NA	31	NM_001042710	73106	Mm.491308	NM_001042710	ENSMUSG00000020323	Prss57	2900092M14Rik|GLGL782|NSP4|Prssl1|UNQ782	protease, serine 57	protein-coding	0.010000	0.572139	
mm_31521.1	chr4	54947129	54947329	+	1	NA	NA	NA	-716	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.040000	0.601990	16(GCATTTAGAGCA,+,0.00)
mm_163696.1	chr13	101555878	101556078	+	1	NA	NA	NA	136652	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.005000	0.293532	
mm_158548.1	chrX	145505048	145505248	-	1	NA	NA	NA	-17509	NM_153319	27494	Mm.100068	NM_153319	ENSMUSG00000041688	Amot	CAG-2|D0Kist1|Sii6	angiomotin	protein-coding	0.050000	0.621891	
mm_172332.1	chr7	10904946	10905146	-	1	NA	NA	NA	4	NM_001185173	665780	Mm.482067	NM_001185173	ENSMUSG00000095339	Zscan4b	EG665780	zinc finger and SCAN domain containing 4B	protein-coding	0.000000	0.452736	-38(GGCTATAAAAGG,-,0.00)
mm_22336.1	chr2	180709716	180709916	-	1	NA	NA	NA	183	NM_177852	23856	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.060000	0.552239	
mm_54991.1	chr6	48770682	48770882	-	1	NA	NA	NA	69	NM_031247	83408	Mm.333050	NM_031247	ENSMUSG00000039264	Gimap3	2010110D23Rik|Gimap5|Ian4	GTPase, IMAP family member 3	protein-coding	0.010000	0.527363	
mm_98141.1	chr11	87580956	87581156	+	1	NA	NA	NA	-5	NM_001284394	18952	Mm.2214	NM_011129	ENSMUSG00000020486	Sept4	ARTS|Bh5|OTTMUSG00000001265|Pnutl2	septin 4	protein-coding	0.010000	0.547264	
mm_46745.1	chr5	111234596	111234796	-	1	NA	NA	NA	-96001	NM_001301644	56305	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0.015000	0.522388	
mm_112048.1	chr12	111712821	111713021	-	1	NA	NA	NA	32	NM_001324481	70369	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.170000	0.810945	
mm_107671.1	chr12	53783507	53783707	+	1	NA	NA	NA	420267	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	0.000000	0.323383	
mm_66583.1	chr7	45370488	45370688	-	1	NA	NA	NA	-24	NM_011698	22342	Mm.20472	NM_011698	ENSMUSG00000003872	Lin7b	LIN-7B|MALS-2|Veli2	lin-7 homolog B (C. elegans)	protein-coding	0.060000	0.681592	
mm_145162.1	chr18	46609180	46609380	+	1	NA	NA	NA	11576	NM_010120	13664	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.005000	0.338308	13(GGATTTAAATGG,-,0.00)
mm_64834.1	chr7	12961718	12961918	-	1	NA	NA	NA	-4046	NM_178732	243834	Mm.133086	NM_178732	ENSMUSG00000004500	Zfp324	A930002M05|D430030K24Rik|ZF5128	zinc finger protein 324	protein-coding	0.045000	0.492537	-26(GGATCTATAAGC,-,0.00)
mm_122227.1	chr14	33112156	33112356	-	1	NA	NA	NA	72810	NM_001146022	545030	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.000000	0.462687	-51(AACTTTAAAAAG,-,0.00),-49(CTTTAAAAAGCT,+,0.00)
mm_80279.1	chr9	73012050	73012250	+	1	NA	NA	NA	26646	NM_028181	72278	Mm.268475	NM_028181	ENSMUSG00000034563	Ccpg1	1700030B06Rik|1810073J13Rik|9430028F23Rik|AI426686|AI875170|CPR8|D9Ertd392e	cell cycle progression 1	protein-coding	0.010000	0.462687	
mm_146405.1	chr18	83358926	83359126	+	1	NA	NA	NA	-33142	NR_045361	70960	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0.030000	0.542289	
mm_32247.1	chr4	102570042	102570242	+	1	NA	NA	NA	82	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.015000	0.472637	
mm_55600.1	chr6	71642037	71642237	-	1	NA	NA	NA	-9220	NM_001038695	104263	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0.050000	0.512438	
mm_129589.1	chr15	79788949	79789149	-	1	NA	NA	NA	-14582	NM_017470	54152	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	0.005000	0.582090	
mm_41287.1	chr5	90462692	90462892	+	1	NA	NA	NA	1922	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.020000	0.447761	
mm_121680.1	chr14	12822982	12823182	-	1	NA	NA	NA	-3	NM_012061	27062	Mm.260881	NM_012061	ENSMUSG00000054423	Cadps	AU067781|CAPS|CAPS1|mKIAA1121	Ca2+-dependent secretion activator	protein-coding	0.085000	0.611940	
mm_17110.1	chr2	24349539	24349739	-	1	NA	NA	NA	4268	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.020000	0.507463	39(GACTATAAGGGG,-,0.00)
mm_23903.1	chr3	83031771	83031971	+	1	NA	NA	NA	5718	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.035000	0.497512	
mm_151966.1	chr19	5801798	5801998	-	1	NA	NA	NA	774	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.010000	0.368159	
mm_58890.1	chr7	17090471	17090671	+	1	NA	NA	NA	16531	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.020000	0.477612	
mm_97816.1	chr11	82962978	82963178	+	1	NA	NA	NA	-2397	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.005000	0.422886	
mm_124256.1	chr14	101892555	101892755	-	1	NA	NA	NA	52032	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.020000	0.502488	-43(GGGTATATAAAG,-,0.00),-27(CCCCATTAAAGC,-,0.00)
mm_165022.1	chr19	32258148	32258348	+	1	NA	NA	NA	-47235	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.010000	0.442786	
mm_72628.1	chr8	84660119	84660319	+	1	NA	NA	NA	2633	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.035000	0.552239	
mm_28141.1	chr3	87263494	87263694	-	1	NA	NA	NA	-70	NM_030707	80891	Mm.45173	NM_030707	ENSMUSG00000015852	Fcrls	2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc	Fc receptor-like S, scavenger receptor	protein-coding	0.005000	0.467662	
mm_94682.1	chr11	19019001	19019201	+	1	NA	NA	NA	-132	NM_010789	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.060000	0.606965	
mm_152560.1	chr19	11494489	11494689	-	1	NA	NA	NA	2551	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.015000	0.407960	
mm_121689.1	chr14	13954928	13955128	-	1	NA	NA	NA	6285	NM_001285780	66231	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.000000	0.348259	
mm_106170.1	chr11	116679098	116679298	-	1	NA	NA	NA	4601	NR_028570	100216538		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0.005000	0.532338	
mm_171492.1	chr4	146156738	146156938	+	1	NA	NA	NA	11	NM_001177546	667666	Mm.459230	NM_001177545	ENSMUSG00000066007	Zfp600	Gm13164|OTTMUSG00000010694	zinc finger protein 600	protein-coding	0.030000	0.532338	
mm_79533.1	chr9	57765120	57765320	+	1	NA	NA	NA	640	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.120000	0.756219	
mm_40302.1	chr5	43672242	43672442	+	1	NA	NA	NA	9963	NM_172274	231214	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	0.010000	0.502488	
mm_157855.1	chrX	75035205	75035405	-	1	NA	NA	NA	49600	NM_181584	210710	Mm.267056	NM_181584	ENSMUSG00000032750	Gab3	5930433H21Rik	growth factor receptor bound protein 2-associated protein 3	protein-coding	0.005000	0.452736	
mm_160326.1	chr8	3690095	3690295	-	1	NA	NA	NA	195	NM_001253739	14128	Mm.1233	NM_013517	ENSMUSG00000005540	Fcer2a	CD23|Fce2|Fcer2|Ly-42	Fc receptor, IgE, low affinity II, alpha polypeptide	protein-coding	0.015000	0.532338	
mm_31208.1	chr4	43937225	43937425	+	1	NA	NA	NA	-20377	NM_027450	384009	Mm.22213	NM_027450	ENSMUSG00000028480	Glipr2	5730414A08Rik|C77180|GAPR-1	GLI pathogenesis-related 2	protein-coding	0.015000	0.517413	
mm_134567.1	chr16	20356208	20356408	-	1	NA	NA	NA	-30904	NM_183158	224044	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.005000	0.452736	
mm_141757.1	chr17	34264038	34264238	-	1	NA	NA	NA	911	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.030000	0.542289	
mm_75725.1	chr8	69113606	69113806	-	1	NA	NA	NA	-24484	NM_153054	110877	Mm.19301	NM_153054	ENSMUSG00000036330	Slc18a1	4832416I10Rik|Vat1|Vmat1	solute carrier family 18 (vesicular monoamine), member 1	protein-coding	0.020000	0.402985	
mm_64609.1	chr7	3290043	3290243	-	1	NA	NA	NA	-412	NM_016969	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.045000	0.537313	
mm_49344.1	chr6	21950290	21950490	+	1	NA	NA	NA	775	NM_023626	71777	Mm.39999	NM_023626	ENSMUSG00000029670	Ing3	1300013A07Rik|P47ING3	inhibitor of growth family, member 3	protein-coding	0.035000	0.462687	
mm_165519.1	chr2	173768154	173768354	+	1	NA	NA	NA	30683	NM_019806	56491	Mm.260456	NM_019806	ENSMUSG00000054455	Vapb	AI225786|AI840687|AI848259|D2Abb2e|R75548|VAP33b|Vamp33b	vesicle-associated membrane protein, associated protein B and C	protein-coding	0.025000	0.512438	
mm_137297.1	chr17	24804219	24804419	+	1	NA	NA	NA	-63	NM_029197	75178	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	0.100000	0.721393	
mm_158516.1	chrX	143393808	143394008	-	1	NA	NA	NA	354	NM_031258	83453	Mm.157697	NM_031258	ENSMUSG00000031283	Chrdl1	CHL|CHL1|Nrln1|VOPT	chordin-like 1	protein-coding	0.060000	0.656716	
mm_135395.1	chr16	44531028	44531228	-	1	NA	NA	NA	27001	NR_037242	100526478		NR_037242	ENSMUSG00000093046	Mir3081	mir-3081|mmu-mir-3081	microRNA 3081	ncRNA	0.020000	0.572139	
mm_102978.1	chr11	69672313	69672513	-	1	NA	NA	NA	10	NM_144958	13681	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0.085000	0.606965	61(CGCTCTATAAGT,-,0.00)
mm_165838.1	chr3	158016276	158016476	-	1	NA	NA	NA	15378	NM_001093753	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.045000	0.517413	
mm_38074.1	chr4	134127657	134127857	-	1	NA	NA	NA	996	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.025000	0.572139	
mm_34878.1	chr4	155577048	155577248	+	1	NA	NA	NA	13333	NM_001159637	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.020000	0.582090	
mm_404.1	chr1	34186775	34186975	+	1	NA	NA	NA	26545	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.025000	0.462687	
mm_78806.1	chr9	44066909	44067109	+	1	NA	NA	NA	-12	NM_198092	53376	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.090000	0.676617	
mm_49392.1	chr6	25663615	25663815	+	1	NA	NA	NA	26265	NM_010338	14763	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	0.000000	0.328358	
mm_40482.1	chr5	54377446	54377646	+	1	NA	NA	NA	27554	NR_038045	330086	Mm.254449	NM_177871	ENSMUSG00000105912	Gm10440	D130065D13|ENSMUSG00000072936	predicted gene 10440	ncRNA	0.005000	0.432836	
mm_140608.1	chr17	10721444	10721644	-	1	NA	NA	NA	118647	NM_027032	69310	Mm.18889	NM_027032	ENSMUSG00000037196	Pacrg	1700008H23Rik	PARK2 co-regulated	protein-coding	0.000000	0.467662	
mm_144019.1	chr17	89200611	89200811	-	1	NA	NA	NA	-36	NM_013523	14309	Mm.57155	NM_013523	ENSMUSG00000032937	Fshr	-	follicle stimulating hormone receptor	protein-coding	0.030000	0.462687	
mm_48014.1	chr5	136165998	136166198	-	1	NA	NA	NA	4558	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.010000	0.512438	36(CCTCTTATGGGA,+,0.00)
mm_84551.1	chr9	67573202	67573402	-	1	NA	NA	NA	-13599	NM_001081242	70549	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	0.005000	0.507463	
mm_41911.1	chr5	105591218	105591418	+	1	NA	NA	NA	71847	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.005000	0.472637	
mm_172322.1	chr7	106529113	106529313	-	1	NA	NA	NA	-88140	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.005000	0.492537	20(CCTCATAGAGCC,+,0.00)
mm_72904.1	chr8	90896194	90896394	+	1	NA	NA	NA	-35955	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.000000	0.447761	
mm_38452.1	chr4	140246709	140246909	-	1	NA	NA	NA	2	NM_198610	230868	Mm.298731	NM_198610	ENSMUSG00000040972	Igsf21	BC055811|Gm141	immunoglobulin superfamily, member 21	protein-coding	0.140000	0.751244	
mm_55772.1	chr6	78467802	78468002	-	1	NA	NA	NA	972	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.015000	0.467662	
mm_91721.1	chr10	44460864	44461064	-	1	NA	NA	NA	-2216	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.005000	0.373134	
mm_65870.1	chr7	29505660	29505860	-	1	NA	NA	NA	-300	NM_001081028	74206	Mm.447042	NM_001081028	ENSMUSG00000030583	Sipa1l3	2610511M17Rik	signal-induced proliferation-associated 1 like 3	protein-coding	0.025000	0.592040	
mm_92329.1	chr10	75781301	75781501	-	1	NA	NA	NA	13	NM_133994	103140	Mm.5731	NM_133994	ENSMUSG00000001665	Gstt3	AI118089	glutathione S-transferase, theta 3	protein-coding	0.020000	0.502488	
mm_99426.1	chr11	102393486	102393686	+	1	NA	NA	NA	183	NM_001252347	51799	Mm.2560	NM_016759	ENSMUSG00000006575	Rundc3a	RPIP-8|Rap2ip|Rpip8	RUN domain containing 3A	protein-coding	0.105000	0.726368	
mm_12234.1	chr2	68582313	68582513	+	1	NA	NA	NA	0	NM_177651	227998	Mm.67562	NM_177651	ENSMUSG00000053896	4933409G03Rik	-	RIKEN cDNA 4933409G03 gene	protein-coding	0.000000	0.487562	
mm_167584.1	chr9	46049722	46049922	+	1	NA	NA	NA	37002	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.015000	0.477612	
mm_73442.1	chr8	106210048	106210248	+	1	NA	NA	NA	785	NM_001007567	66432	Mm.269029	NM_001007567	ENSMUSG00000033106	Slc7a6os	2010007L18Rik|2400002F02Rik	solute carrier family 7, member 6 opposite strand	protein-coding	0.025000	0.467662	
mm_64695.1	chr7	4526382	4526582	-	1	NA	NA	NA	-4039	NM_009406	21954	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0.050000	0.597015	
mm_69346.1	chr7	130201087	130201287	-	1	NA	NA	NA	65621	NM_010207	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	0.020000	0.577114	
mm_57395.1	chr6	124857631	124857831	-	1	NA	NA	NA	-44	NM_013534	14789	Mm.9002	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0.045000	0.651741	
mm_26975.1	chr3	25144115	25144315	-	1	NA	NA	NA	-360209	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.155000	0.776119	
mm_131381.1	chr16	14159538	14159738	+	1	NA	NA	NA	12	NR_030252	723916		NR_030252	ENSMUSG00000070074	Mir484	Mirn484|mir-484|mmu-mir-484	microRNA 484	ncRNA	0.075000	0.606965	
mm_68238.1	chr7	105396082	105396282	-	1	NA	NA	NA	3872	NM_001242364	74349	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	0.000000	0.477612	
mm_96233.1	chr11	62551174	62551374	+	1	NA	NA	NA	103	NM_011664	22187	Mm.371592	NM_011664	ENSMUSG00000019505	Ubb	AL033289|Rps27a|Uba52|Ubb2|Ubc	ubiquitin B	protein-coding	0.070000	0.507463	
mm_43818.1	chr5	142929676	142929876	+	1	NA	NA	NA	-23022	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.015000	0.402985	
mm_53911.1	chr6	3988758	3988958	-	1	NA	NA	NA	0	NR_138566	21789	Mm.25612	NM_009364	ENSMUSG00000029664	Tfpi2	AV000670|PP5/TFPI-2	tissue factor pathway inhibitor 2	protein-coding	0.010000	0.417910	
mm_77935.1	chr9	7354728	7354928	+	1	NA	NA	NA	7454	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.383085	16(TCCTTTTTAAAG,-,0.00),17(CCTTTTTAAAGG,-,0.00),18(CTTTTTAAAGGT,+,0.00)
mm_173151.1	chrX	32209323	32209523	+	1	NA	NA	NA	-68971	NM_001168334	100040482	Mm.479861	NM_001168334	ENSMUSG00000096194	Btbd35f2	Gm2799	BTB domain containing 35, family member 2	protein-coding	0.040000	0.512438	-29(TTCTATAAAAGT,-,0.00)
mm_40102.1	chr5	34650605	34650805	+	1	NA	NA	NA	9443	NM_029278	75416	Mm.40292	NM_029278	ENSMUSG00000036693	Nop14	2610033H07Rik|Nol14	NOP14 nucleolar protein	protein-coding	0.010000	0.487562	
mm_45712.1	chr5	84321638	84321838	-	1	NA	NA	NA	95644	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.000000	0.462687	
mm_155728.1	chrX	96160062	96160262	+	1	NA	NA	NA	64117	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.040000	0.537313	
mm_99379.1	chr11	102041404	102041604	+	1	NA	NA	NA	-7	NM_001160711	52685	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	0.020000	0.597015	
mm_43896.1	chr5	144190169	144190369	+	1	NA	NA	NA	-17	NM_010800	17341	Mm.386767	NM_010800	ENSMUSG00000052271	Bhlha15	1810009C13Rik|Bhlhb8|MIST-1|Mist1	basic helix-loop-helix family, member a15	protein-coding	0.085000	0.676617	
mm_105557.1	chr11	106487709	106487909	-	1	NA	NA	NA	-13	NM_023913	78943	Mm.340943	NM_023913	ENSMUSG00000020715	Ern1	9030414B18Rik|AI225830|C85377|Ire1a|Ire1alpha|Ire1p	endoplasmic reticulum (ER) to nucleus signalling 1	protein-coding	0.120000	0.726368	
mm_140845.1	chr17	23676473	23676673	-	1	NA	NA	NA	876	NM_001161746	27279	Mm.28518	NM_013749	ENSMUSG00000023905	Tnfrsf12a	AI255180|C87282|Fn14|HPIP|TWEAK-R|TweakR	tumor necrosis factor receptor superfamily, member 12a	protein-coding	0.060000	0.651741	
mm_72993.1	chr8	93016985	93017185	+	1	NA	NA	NA	31107	NM_001013764	244595	Mm.390089	NM_001013764	ENSMUSG00000071047	Ces1a	Ces1l|EG244595|Gm4976	carboxylesterase 1A	protein-coding	0.005000	0.432836	
mm_162227.1	chrX	148180738	148180938	+	1	NA	NA	NA	114	NM_001081648	434864	Mm.484933	NM_001081648	ENSMUSG00000072930	Gm15107	OTTMUSG00000019001|Ott-like	predicted gene 15107	protein-coding	0.020000	0.552239	
mm_64349.1	chr7	142382547	142382747	+	1	NA	NA	NA	5223	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.020000	0.577114	
mm_128596.1	chr15	58134971	58135171	-	1	NA	NA	NA	11	NM_027435	70472	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0.125000	0.706468	
mm_42912.1	chr5	122650285	122650485	+	1	NA	NA	NA	-39	NM_001284402	18439	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.015000	0.472637	-35(TCCTTTAAAAGA,-,0.00),-34(CCTTTAAAAGAA,+,0.00)
mm_60639.1	chr7	44836190	44836390	+	1	NA	NA	NA	2	NM_010215	14204	Mm.2565	NM_010215	ENSMUSG00000074141	Il4i1	Fig1|Fig1-ps|LAAO|LAO	interleukin 4 induced 1	protein-coding	0.015000	0.582090	-33(TACTTTTAAGGG,-,0.00),-32(ACTTTTAAGGGG,+,0.00)
mm_172080.1	chr6	145932820	145933020	-	1	NA	NA	NA	1047	NM_001310837	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.075000	0.562189	
mm_2873.1	chr1	131797301	131797501	+	1	NA	NA	NA	6	NM_178079	212933	Mm.23844	NM_178079	ENSMUSG00000042251	Pm20d1	4732466D17Rik|AI098026	peptidase M20 domain containing 1	protein-coding	0.040000	0.542289	
mm_32135.1	chr4	99194177	99194377	+	1	NA	NA	NA	130	NM_001145967	242557	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.085000	0.661692	
mm_58459.1	chr7	3338728	3338928	+	1	NA	NA	NA	2243	NM_133189	81904	Mm.214994	NM_133189	ENSMUSG00000069806	Cacng7	-	calcium channel, voltage-dependent, gamma subunit 7	protein-coding	0.020000	0.552239	
mm_109844.1	chr12	4593591	4593791	-	1	NA	NA	NA	683	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.045000	0.492537	
mm_6807.1	chr1	84157105	84157305	-	1	NA	NA	NA	61756	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.343284	
mm_170646.1	chr19	9753678	9753878	+	1	NA	NA	NA	145755	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.055000	0.512438	
mm_66797.1	chr7	47132605	47132805	-	1	NA	NA	NA	-107	NM_001163565	19259	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0.060000	0.691542	
mm_131028.1	chr16	3729923	3730123	+	1	NA	NA	NA	-11899	NM_001161791	54483	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.000000	0.482587	-94(CCCTTTAAATGA,-,0.00),-32(GGATATAAAAAG,-,0.00)
mm_22822.1	chr3	27227196	27227396	+	1	NA	NA	NA	44292	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.015000	0.402985	
mm_146054.1	chr18	69637973	69638173	+	1	NA	NA	NA	-287486	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.005000	0.492537	
mm_9428.1	chr1	172496031	172496231	-	1	NA	NA	NA	-4115	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.030000	0.611940	
mm_134831.1	chr16	26105544	26105744	-	1	NA	NA	NA	140	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.120000	0.726368	
mm_102264.1	chr11	55336514	55336714	-	1	NA	NA	NA	-24357	NM_001029988	245827	Mm.339363	NM_001029988	ENSMUSG00000055333	Fat2	EMI2|Fath2|Gm523|mKIAA0811	FAT atypical cadherin 2	protein-coding	0.015000	0.621891	
mm_109733.1	chr12	117127110	117127310	+	1	NA	NA	NA	24059	NR_033538	100038689	Mm.445351	NR_033538	ENSMUSG00000099907	Gm10421	ENSMUSG00000072792	predicted gene 10421	ncRNA	0.010000	0.527363	
mm_137000.1	chr17	17448809	17449009	+	1	NA	NA	NA	46223	NM_025681	66643	Mm.268018	NM_025681	ENSMUSG00000047786	Lix1	5730466L18Rik	limb and CNS expressed 1	protein-coding	0.045000	0.522388	
mm_152101.1	chr19	6921678	6921878	-	1	NA	NA	NA	30	NM_007953	26379	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	0.100000	0.711443	
mm_133126.1	chr16	65815899	65816099	+	1	NA	NA	NA	366	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.020000	0.517413	
mm_156483.1	chrX	144317973	144318173	+	1	NA	NA	NA	107	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.145000	0.686567	
mm_83682.1	chr9	50479434	50479634	-	1	NA	NA	NA	-14991	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.030000	0.467662	
mm_123713.1	chr14	69824754	69824954	-	1	NA	NA	NA	-15553	NM_028560	73523	Mm.23509	NM_028526	ENSMUSG00000022085	Pebp4	PEBP-4	phosphatidylethanolamine binding protein 4	protein-coding	0.020000	0.517413	
mm_32683.1	chr4	115827982	115828182	+	1	NA	NA	NA	-10	NM_175308	100465	Mm.35571	NM_175308	ENSMUSG00000028709	Mob3c	AW822253|D130076I06Rik|Mobkl2c	MOB kinase activator 3C	protein-coding	0.115000	0.716418	
mm_110571.1	chr12	56345717	56345917	-	1	NA	NA	NA	77	NM_145442	217588	Mm.25656	NM_145442	ENSMUSG00000021028	Mbip	4933408E06Rik	MAP3K12 binding inhibitory protein 1	protein-coding	0.070000	0.616915	
mm_150569.1	chr19	40111194	40111394	+	1	NA	NA	NA	21615	NM_001167875	107141	Mm.474575	NM_134144	ENSMUSG00000054827	Cyp2c50	AI266900	cytochrome P450, family 2, subfamily c, polypeptide 50	protein-coding	0.010000	0.373134	
mm_144960.1	chr18	37819411	37819611	+	1	NA	NA	NA	-35	NM_033583	93708	Mm.247203	NM_033583	ENSMUSG00000102543	Pcdhgc5	-	protocadherin gamma subfamily C, 5	protein-coding	0.010000	0.557214	47(TTTTTTAAAGAG,+,0.00)
mm_55964.1	chr6	85513192	85513392	-	1	NA	NA	NA	250	NM_020596	13656	Mm.44137	NM_020596	ENSMUSG00000071341	Egr4	NGF1-C|NGFI-C|NGFIC|pAT133	early growth response 4	protein-coding	0.110000	0.696517	
mm_164323.1	chr16	5049271	5049471	+	1	NA	NA	NA	539	NM_001079814	74022	Mm.21652	NM_028720	ENSMUSG00000022536	Glyr1	2810419J22Rik|3930401K13Rik|AW545332|Npac	glyoxylate reductase 1 homolog (Arabidopsis)	protein-coding	0.065000	0.587065	
mm_4674.1	chr1	180419391	180419591	+	1	NA	NA	NA	64013	NM_001081227	381310	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|ENSMUSG00000056615|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.000000	0.482587	
mm_129594.1	chr15	79804614	79804814	-	1	NA	NA	NA	-5	NM_030689	73340	Mm.38438	NM_030689	ENSMUSG00000022421	Nptxr	1200009K17Rik|1700036C17Rik|5730406O18Rik|AI452369|AI785356|D15Bwg0580e|NPR|Npcd	neuronal pentraxin receptor	protein-coding	0.170000	0.840796	
mm_113887.1	chr13	49188153	49188353	+	1	NA	NA	NA	706	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.040000	0.577114	
mm_133122.1	chr16	65815307	65815507	+	1	NA	NA	NA	-226	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.120000	0.726368	-33(CGCTATATAAGC,-,0.00)
mm_109923.1	chr12	8636933	8637133	-	1	NA	NA	NA	-37101	NM_001160221	80913	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.020000	0.467662	
mm_171392.1	chr4	12232685	12232885	+	1	NA	NA	NA	-60770	NM_026558	68099	Mm.25340	NM_026558	ENSMUSG00000028218	Fam92a	6720467C03Rik|Fam92a1	family with sequence similarity 92, member A	protein-coding	0.055000	0.512438	
mm_66603.1	chr7	45459610	45459810	-	1	NA	NA	NA	176	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.060000	0.567164	-32(CCTTTACAAGTC,+,0.00)
mm_105256.1	chr11	102356079	102356279	-	1	NA	NA	NA	9102	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.040000	0.522388	
mm_22024.1	chr2	168010608	168010808	-	1	NA	NA	NA	-115	NM_001080708	69553	Mm.68454	NM_001080708	ENSMUSG00000074577	Fam65c	2310033K02Rik|Gm124	family with sequence similarity 65, member C	protein-coding	0.015000	0.542289	
mm_105880.1	chr11	114929011	114929211	-	1	NA	NA	NA	5275	NM_001347651	217304	Mm.185355	NM_199221	ENSMUSG00000063193	Cd300lb	CLM-7|Clm7|Gm253|LMIR5	CD300 molecule like family member B	protein-coding	0.010000	0.497512	
mm_71612.1	chr8	56551072	56551272	+	1	NA	NA	NA	38	NM_015791	50753	Mm.251174	NM_015791	ENSMUSG00000038206	Fbxo8	Fbx8	F-box protein 8	protein-coding	0.080000	0.587065	-89(CCTTTAAGGAGC,+,0.00)
mm_55864.1	chr6	83456698	83456898	-	1	NA	NA	NA	-406	NM_001347313	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.105000	0.791045	
mm_165144.1	chr2	18698883	18699083	+	1	NA	NA	NA	-39	NM_001001334	381350	Mm.330024	NM_001001334	ENSMUSG00000037708	Spag6	Spag6l	sperm associated antigen 6	protein-coding	0.095000	0.636816	
mm_72741.1	chr8	85086726	85086926	+	1	NA	NA	NA	3557	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.020000	0.497512	
mm_102537.1	chr11	61206098	61206298	-	1	NA	NA	NA	-2544	NM_007436	11670	Mm.4257	NM_007436	ENSMUSG00000019102	Aldh3a1	Ahd-4|Ahd4|Aldh|Aldh3	aldehyde dehydrogenase family 3, subfamily A1	protein-coding	0.035000	0.537313	
mm_9147.1	chr1	170913567	170913767	-	1	NA	NA	NA	-726	NM_001029984	435653	Mm.337931	NM_001029984	ENSMUSG00000070524	Fcrlb	FREB-2|FREB2|FcRL2|Fcrlm2|Fcry|mFCRL2	Fc receptor-like B	protein-coding	0.030000	0.572139	
mm_10782.1	chr2	24336815	24337015	+	1	NA	NA	NA	55	NM_031167	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.005000	0.517413	-10(TCCTTTATACAC,+,0.00)
mm_107017.1	chr12	12547828	12548028	+	1	NA	NA	NA	121989	NR_136889	102637952	Mm.421393	NR_136889		Gm34637	-	predicted gene, 34637	ncRNA	0.010000	0.442786	
mm_23329.1	chr3	54155957	54156157	+	1	NA	NA	NA	0	NM_001253683	22066	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0.060000	0.651741	
mm_45158.1	chr5	49524698	49524898	-	1	NA	NA	NA	-239139	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.105000	0.696517	
mm_121378.1	chr14	118787849	118788049	+	1	NA	NA	NA	78	NM_001160097	58187	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0.000000	0.333333	
mm_77802.1	chr9	3032346	3032546	+	1	NA	NA	NA	6297	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.368159	
mm_123496.1	chr14	66179423	66179623	-	1	NA	NA	NA	34029	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.005000	0.338308	
mm_149696.1	chr19	21274965	21275165	+	1	NA	NA	NA	2787	NM_009551	22682	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.000000	0.383085	
mm_107100.1	chr12	17728105	17728305	+	1	NA	NA	NA	37391	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.030000	0.552239	
mm_156314.1	chrX	136993133	136993333	+	1	NA	NA	NA	78	NM_001035509	66995	Mm.440155	NM_025893	ENSMUSG00000031428	Zcchc18	1500031H04Rik|Sizn2	zinc finger, CCHC domain containing 18	protein-coding	0.050000	0.606965	
mm_125396.1	chr15	41447264	41447464	+	1	NA	NA	NA	-118	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.140000	0.751244	
mm_140315.1	chr17	86232648	86232848	+	1	NA	NA	NA	54430	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.010000	0.343284	
mm_81600.1	chr9	110532567	110532767	+	1	NA	NA	NA	70	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.125000	0.736318	
mm_79878.1	chr9	65208452	65208652	+	1	NA	NA	NA	-6138	NM_177460	214424	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.015000	0.542289	-35(CACTATAAGAGG,-,0.00)
mm_153021.1	chr19	31126002	31126202	-	1	NA	NA	NA	43261	NM_031249	83410	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	0.005000	0.388060	
mm_98781.1	chr11	96829520	96829720	+	1	NA	NA	NA	-118	NM_001130450	18023	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	0.095000	0.716418	
mm_139093.1	chr17	46890539	46890739	+	1	NA	NA	NA	18	NM_178385	72726	Mm.33780	NM_178385	ENSMUSG00000036430	Tbcc	2810055C19Rik	tubulin-specific chaperone C	protein-coding	0.095000	0.661692	
mm_79777.1	chr9	62850951	62851151	+	1	NA	NA	NA	-7053	NM_001102468	75600	Mm.440576	NM_138304	ENSMUSG00000032246	Calml4	2010002G05Rik	calmodulin-like 4	protein-coding	0.005000	0.457711	
mm_73646.1	chr8	110919741	110919941	+	1	NA	NA	NA	-24	NM_009179	20444	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	0.045000	0.706468	
mm_172328.1	chr7	10798976	10799176	-	1	NA	NA	NA	-11	NR_033707	434555	Mm.379679	NR_033707	ENSMUSG00000110097	Zscan4a	BQ559217	zinc finger and SCAN domain containing 4A	pseudo	0.005000	0.462687	-38(GGCTATAAAAGG,-,0.00)
mm_93263.1	chr10	95564077	95564277	-	1	NA	NA	NA	-10	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.165000	0.761194	-1(CCGCTTAAATGC,-,0.00),1(GCTTAAATGCGG,+,0.00)
mm_135806.1	chr16	57350463	57350663	-	1	NA	NA	NA	-2714	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.005000	0.477612	
mm_35808.1	chr4	46650014	46650214	-	1	NA	NA	NA	85	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	0.100000	0.706468	
mm_141030.1	chr17	25256184	25256384	-	1	NA	NA	NA	80	NM_001163270	545192	Mm.328859	NM_001163270	ENSMUSG00000047507	Baiap3	Bap3|Gm937	BAI1-associated protein 3	protein-coding	0.105000	0.756219	
mm_5906.1	chr1	54926312	54926512	-	1	NA	NA	NA	-25	NM_001081433	329154	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.145000	0.791045	33(CTGTATAAAGGC,-,0.00)
mm_173183.1	chrX	58073434	58073634	+	1	NA	NA	NA	42906	NM_009575	22773	Mm.255890	NM_009575	ENSMUSG00000067860	Zic3	Bn|Ka	zinc finger protein of the cerebellum 3	protein-coding	0.010000	0.487562	
mm_73845.1	chr8	117548813	117549013	+	1	NA	NA	NA	50638	NM_172285	234779	Mm.192699	NM_172285	ENSMUSG00000034330	Plcg2	PLC-gamma-2|PLCgamma2|Plcg-2	phospholipase C, gamma 2	protein-coding	0.000000	0.462687	
mm_104903.1	chr11	99634981	99635181	-	1	NA	NA	NA	3	NM_026807	68673	Mm.351893	NM_026807	ENSMUSG00000044649	Krtap4-2	1110033F04Rik|AI604442	keratin associated protein 4-2	protein-coding	0.000000	0.467662	-35(GGGTATAAAAAG,-,0.00)
mm_62553.1	chr7	102442588	102442788	+	1	NA	NA	NA	993	NM_009103	20133	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.000000	0.422886	
mm_113652.1	chr13	42307139	42307339	+	1	NA	NA	NA	5763	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.025000	0.482587	
mm_69995.1	chr7	142385524	142385724	-	1	NA	NA	NA	2246	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.025000	0.567164	
mm_164978.1	chr19	8839036	8839236	-	1	NA	NA	NA	110	NM_010316	14704	Mm.329700	NM_010316	ENSMUSG00000071658	Gng3	-	guanine nucleotide binding protein (G protein), gamma 3	protein-coding	0.010000	0.537313	
mm_33183.1	chr4	126096659	126096859	+	1	NA	NA	NA	106	NM_138721	116748	Mm.41865	NM_138721	ENSMUSG00000050188	Lsm10	-	U7 snRNP-specific Sm-like protein LSM10	protein-coding	0.110000	0.681592	
mm_39111.1	chr4	154928096	154928296	-	1	NA	NA	NA	-119	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.010000	0.477612	
mm_62279.1	chr7	99594542	99594742	+	1	NA	NA	NA	32461	NM_001195529	100503386	Mm.180719	NM_001195529	ENSMUSG00000096606	Tpbgl	EG245190|Gm4980	trophoblast glycoprotein-like	protein-coding	0.040000	0.567164	
mm_158750.1	chrX	165327011	165327211	-	1	NA	NA	NA	-130	NM_183427	237213	Mm.113877	NM_183427	ENSMUSG00000018589	Glra2	-	glycine receptor, alpha 2 subunit	protein-coding	0.010000	0.462687	
mm_92051.1	chr10	62503845	62504045	-	1	NA	NA	NA	3810	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.000000	0.378109	
mm_81947.1	chr9	120492617	120492817	+	1	NA	NA	NA	111	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.125000	0.681592	
mm_125572.1	chr15	59315103	59315303	+	1	NA	NA	NA	111	NM_009270	20775	Mm.296169	NM_009270	ENSMUSG00000022351	Sqle	AI323792	squalene epoxidase	protein-coding	0.080000	0.641791	
mm_100769.1	chr11	4704243	4704443	-	1	NA	NA	NA	1	NM_197979	66152	Mm.269736	NM_197979	ENSMUSG00000059534	Uqcr10	1110020P15Rik|AA960494|Ucrc	ubiquinol-cytochrome c reductase, complex III subunit X	protein-coding	0.075000	0.507463	
mm_112049.1	chr12	111712838	111713038	-	1	NA	NA	NA	15	NM_001324481	70369	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.180000	0.815920	
mm_145293.1	chr18	53252074	53252274	+	1	NA	NA	NA	6512	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.010000	0.432836	
mm_30097.1	chr3	138289775	138289975	-	1	NA	NA	NA	12230	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.020000	0.402985	
mm_168567.1	chr11	69670138	69670338	-	1	NA	NA	NA	2185	NM_144958	13681	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0.005000	0.437811	
mm_89720.1	chr10	98914469	98914669	+	1	NA	NA	NA	-583	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.185000	0.800995	
mm_101890.1	chr11	48997683	48997883	-	1	NA	NA	NA	-5537	NM_011579	21822	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	0.010000	0.552239	
mm_150061.1	chr19	29384158	29384358	+	1	NA	NA	NA	16820	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.015000	0.527363	
mm_79095.1	chr9	46242816	46243016	+	1	NA	NA	NA	2072	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.045000	0.597015	
mm_100091.1	chr11	115581671	115581871	+	1	NA	NA	NA	17327	NM_001002929	445007	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	0.020000	0.507463	
mm_3707.1	chr1	153900464	153900664	+	1	NA	NA	NA	635	NM_008131	14645	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.100000	0.696517	
mm_141955.1	chr17	35115435	35115635	-	1	NA	NA	NA	-135	NM_148939	266614	Mm.104680	NM_148939	ENSMUSG00000043807	Ly6g5b	-	lymphocyte antigen 6 complex, locus G5B	protein-coding	0.000000	0.542289	
mm_34213.1	chr4	140963104	140963304	+	1	NA	NA	NA	1933	NM_023374	67680	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.010000	0.522388	
mm_62637.1	chr7	107664674	107664874	+	1	NA	NA	NA	57930	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.005000	0.572139	
mm_9132.1	chr1	170824719	170824919	-	1	NA	NA	NA	42952	NM_001081304	226641	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.005000	0.353234	
mm_77196.1	chr8	112030730	112030930	-	1	NA	NA	NA	19471	NM_020584	57321	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	0.015000	0.537313	
mm_58615.1	chr7	5062162	5062362	+	1	NA	NA	NA	119	NM_001205231	22185	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.125000	0.681592	
mm_132295.1	chr16	33381016	33381216	+	1	NA	NA	NA	341	NM_011749	22661	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0.165000	0.855721	
mm_73716.1	chr8	111940625	111940825	+	1	NA	NA	NA	22	NM_026693	93739	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	0.130000	0.666667	
mm_31132.1	chr4	43209198	43209398	+	1	NA	NA	NA	-57861	NM_177195	320571	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	0.020000	0.547264	
mm_68084.1	chr7	101870672	101870872	-	1	NA	NA	NA	16	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.010000	0.532338	-46(AGCCATAAAGGC,-,0.00)
mm_33221.1	chr4	126677584	126677784	+	1	NA	NA	NA	41	NM_011970	26445	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	0.085000	0.671642	
mm_43495.1	chr5	136967734	136967934	+	1	NA	NA	NA	-35	NM_021719	60363	Mm.87202	NM_021719	ENSMUSG00000001739	Cldn15	2210009B08Rik|BB107105	claudin 15	protein-coding	0.035000	0.631841	
mm_128106.1	chr15	27995229	27995429	-	1	NA	NA	NA	30519	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.015000	0.502488	
mm_80163.1	chr9	71215686	71215886	+	1	NA	NA	NA	-3	NM_009022	19378	Mm.42016	NM_009022	ENSMUSG00000013584	Aldh1a2	AV116159|Aldh1a7|Raldh1|Raldh2	aldehyde dehydrogenase family 1, subfamily A2	protein-coding	0.140000	0.731343	-3(GCCTATATACAG,+,0.00)
mm_100519.1	chr11	120530676	120530876	+	1	NA	NA	NA	49	NM_008101	14527	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.140000	0.726368	
mm_16795.1	chr2	10097024	10097224	-	1	NA	NA	NA	16512	NM_025280	16588	Mm.35498	NM_025280	ENSMUSG00000037262	Kin	Kin17	Kin17 DNA and RNA binding protein	protein-coding	0.030000	0.487562	
mm_130431.1	chr15	98165490	98165690	-	1	NA	NA	NA	-12	NM_001170711	78541	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0.010000	0.562189	
mm_67075.1	chr7	68250417	68250617	-	1	NA	NA	NA	13716	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.000000	0.378109	
mm_105702.1	chr11	108262594	108262794	-	1	NA	NA	NA	81194	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.000000	0.407960	
mm_146815.1	chr18	20896316	20896516	-	1	NA	NA	NA	-338	NM_029491	75964	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0.080000	0.646766	
mm_107111.1	chr12	17992745	17992945	+	1	NA	NA	NA	302031	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.145000	0.761194	
mm_141100.1	chr17	26008800	26009000	-	1	NA	NA	NA	12960	NM_153140	215445	Mm.41191	NM_153140	ENSMUSG00000037098	Rab11fip3	Cart1|D030060O14Rik|Rab11-FIP3|mKIAA0665	RAB11 family interacting protein 3 (class II)	protein-coding	0.015000	0.517413	
mm_157043.1	chrX	7977872	7978072	-	1	NA	NA	NA	-10062	NM_008089	14460	Mm.335973	NM_008089	ENSMUSG00000031162	Gata1	Gata-1|Gf-1|eryf1	GATA binding protein 1	protein-coding	0.020000	0.532338	
mm_151455.1	chr19	57999012	57999212	+	1	NA	NA	NA	-52055	NR_049196	100885835		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0.010000	0.442786	
mm_140938.1	chr17	24442984	24443184	-	1	NA	NA	NA	17	NM_025718	66705	Mm.29017	NM_025718	ENSMUSG00000024136	Dnase1l2	4733401H14Rik	deoxyribonuclease 1-like 2	protein-coding	0.000000	0.517413	
mm_83120.1	chr9	40407890	40408090	-	1	NA	NA	NA	47774	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.010000	0.507463	-34(GTCTTTATAAGA,-,0.00)
mm_151143.1	chr19	53085006	53085206	+	1	NA	NA	NA	8854	NR_045320	78457	Mm.76932	NR_045320	ENSMUSG00000099988	1700054A03Rik	-	RIKEN cDNA 1700054A03 gene	ncRNA	0.005000	0.467662	
mm_95909.1	chr11	58206023	58206223	+	1	NA	NA	NA	6567	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.015000	0.422886	
mm_45470.1	chr5	69341578	69341778	-	1	NA	NA	NA	31	NM_175519	243043	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	0.100000	0.696517	
mm_21332.1	chr2	157101540	157101740	-	1	NA	NA	NA	14585	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.030000	0.502488	
mm_29842.1	chr3	129831055	129831255	-	1	NA	NA	NA	241	NM_026578	68147	Mm.24873	NM_026578	ENSMUSG00000028010	Gar1	AA409823|AI326794|C430047J18Rik|Nola1	GAR1 ribonucleoprotein	protein-coding	0.125000	0.701493	
mm_147067.1	chr18	35214823	35215023	-	1	NA	NA	NA	101	NM_178005	107065	Mm.39900	NM_178005	ENSMUSG00000071862	Lrrtm2	AI851755|BB129880|C630011A14Rik|mKIAA0416	leucine rich repeat transmembrane neuronal 2	protein-coding	0.035000	0.467662	
mm_147659.1	chr18	60591792	60591992	-	1	NA	NA	NA	-176	NM_133363	170947	Mm.159257	NM_133363	ENSMUSG00000049173	Myoz3	4833419K08Rik|Fatz-3	myozenin 3	protein-coding	0.035000	0.611940	
mm_122982.1	chr14	54983524	54983724	-	1	NA	NA	NA	-7848	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.040000	0.572139	
mm_35779.1	chr4	46404132	46404332	-	1	NA	NA	NA	-49	NM_053149	93966	Mm.25793	NM_053149	ENSMUSG00000028332	Hemgn	4921524M03Rik|AI317176|EDAG|Hgn|mNDR	hemogen	protein-coding	0.020000	0.532338	
mm_155537.1	chrX	74304066	74304266	+	1	NA	NA	NA	-846	NM_010273	14567	Mm.205830	NM_010273	ENSMUSG00000015291	Gdi1	GDIA|GDIalpha	guanosine diphosphate (GDP) dissociation inhibitor 1	protein-coding	0.010000	0.467662	
mm_112139.1	chr12	113014144	113014344	-	1	NA	NA	NA	-264	NM_001291445	217893	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.145000	0.746269	
mm_165753.1	chr3	108904136	108904336	-	1	NA	NA	NA	7468	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.020000	0.477612	
mm_63412.1	chr7	127344314	127344514	+	1	NA	NA	NA	900	NM_146202	233890	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0.030000	0.487562	
mm_120617.1	chr14	70359906	70360106	+	1	NA	NA	NA	-8582	NM_001135151	213053	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0.020000	0.457711	
mm_73597.1	chr8	109998708	109998908	+	1	NA	NA	NA	8372	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.025000	0.517413	
mm_88534.1	chr10	78404834	78405034	+	1	NA	NA	NA	3611	NR_105872	102465547		NR_105872	ENSMUSG00000098376	Mir6907	Gm27351|mmu-mir-6907	microRNA 6907	ncRNA	0.020000	0.562189	
mm_12149.1	chr2	61804931	61805131	+	1	NA	NA	NA	578	NM_009322	21375	Mm.308525	NM_009322	ENSMUSG00000035033	Tbr1	-	T-box brain gene 1	protein-coding	0.065000	0.616915	
mm_61869.1	chr7	89406859	89407059	+	1	NA	NA	NA	2593	NM_008055	14366	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	0.025000	0.442786	
mm_129481.1	chr15	78770749	78770949	-	1	NA	NA	NA	2596	NM_008595	17305	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.010000	0.542289	
mm_13815.1	chr2	119237111	119237311	+	1	NA	NA	NA	-149	NM_016907	20732	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	0.100000	0.726368	
mm_2723.1	chr1	128178825	128179025	+	1	NA	NA	NA	-23436	NR_029543	387147		NR_029543	ENSMUSG00000065520	Mir128-1	Mirn128|Mirn128-1|Mirn128a|mir-128-1	microRNA 128-1	ncRNA	0.005000	0.303483	
mm_95007.1	chr11	31913207	31913407	+	1	NA	NA	NA	42367	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.000000	0.343284	
mm_61900.1	chr7	90129973	90130173	+	1	NA	NA	NA	-137	NR_046007	78329	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	0.170000	0.791045	
mm_163602.1	chr13	46727926	46728126	-	1	NA	NA	NA	-177	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.115000	0.661692	
mm_56363.1	chr6	93912442	93912642	-	1	NA	NA	NA	421	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.025000	0.532338	89(CACTTTTAAAGG,-,0.00)
mm_172251.1	chr6	70129036	70129236	+	1	NA	NA	NA	663039	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.402985	-42(GACTTTAAGAAG,-,0.00)
mm_116442.1	chr13	43154642	43154842	-	1	NA	NA	NA	16759	NM_001252639	67046	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	0.035000	0.547264	
mm_162929.1	chr10	122805817	122806017	+	1	NA	NA	NA	126602	NR_106182	102466884		NR_106182	ENSMUSG00000099225	Mir8104	Gm27380|mmu-mir-8104	microRNA 8104	ncRNA	0.005000	0.412935	
mm_17543.1	chr2	29845543	29845743	-	1	NA	NA	NA	-4	NR_106110	102466839		NR_106110	ENSMUSG00000105010	Mir219b	mmu-mir-219b	microRNA 219b	ncRNA	0.055000	0.601990	
mm_6154.1	chr1	64956729	64956929	-	1	NA	NA	NA	-5	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.075000	0.621891	
mm_19349.1	chr2	90917696	90917896	-	1	NA	NA	NA	254	NM_025576	66461	Mm.23926	NM_025576		Ptpmt1	1110001D10Rik|2810004N20Rik|PLIP	protein tyrosine phosphatase, mitochondrial 1	protein-coding	0.125000	0.776119	
mm_34897.1	chr4	155625439	155625639	+	1	NA	NA	NA	670	NM_007661	12537	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	0.035000	0.402985	
mm_109396.1	chr12	109891867	109892067	+	1	NA	NA	NA	144089	NR_037233	100499517		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	0.000000	0.507463	
mm_155742.1	chrX	96166539	96166739	+	1	NA	NA	NA	70594	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.030000	0.527363	
mm_116263.1	chr13	34345124	34345324	-	1	NA	NA	NA	-42	NM_001033167	73102	Mm.23932	NM_001033167	ENSMUSG00000038267	Slc22a23	3110004L20Rik	solute carrier family 22, member 23	protein-coding	0.145000	0.786070	
mm_127947.1	chr15	10715207	10715407	-	1	NA	NA	NA	407	NR_045065	75259	Mm.33928	NR_045063	ENSMUSG00000097058	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	0.025000	0.537313	-29(CCCTATCTAGCC,+,0.00)
mm_133123.1	chr16	65815415	65815615	+	1	NA	NA	NA	-118	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.150000	0.746269	
mm_99384.1	chr11	102096240	102096440	+	1	NA	NA	NA	4960	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.040000	0.562189	
mm_43336.1	chr5	135023451	135023651	+	1	NA	NA	NA	69	NR_133683	20907	Mm.6225	NM_016801	ENSMUSG00000007207	Stx1a	HPC-1	syntaxin 1A (brain)	protein-coding	0.120000	0.726368	
mm_71838.1	chr8	68904407	68904607	+	1	NA	NA	NA	23952	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.010000	0.378109	
mm_87753.1	chr10	60277611	60277811	+	1	NA	NA	NA	83	NM_001146121	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.085000	0.641791	
mm_113496.1	chr13	37418574	37418774	+	1	NA	NA	NA	73329	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.010000	0.507463	
mm_56639.1	chr6	113238439	113238639	-	1	NA	NA	NA	696	NM_026849	97287	Mm.197816	NM_026849	ENSMUSG00000030269	Mtmr14	1110061O04Rik|AW553738|C76151	myotubularin related protein 14	protein-coding	0.005000	0.447761	-44(TACCTTATAAGG,-,0.00),-42(CCTTATAAGGAG,+,0.00)
mm_122479.1	chr14	45657972	45658172	-	1	NA	NA	NA	-19	NR_039593	100628600		NR_039593	ENSMUSG00000093167	Mir5131	mmu-mir-5131|mu-mir-5131	microRNA 5131	ncRNA	0.160000	0.761194	
mm_26102.1	chr3	137287795	137287995	+	1	NA	NA	NA	-53183	NM_001163522	59308	Mm.27343	NM_016885	ENSMUSG00000054690	Emcn	0610012K22Rik|AI315669|Muc14	endomucin	protein-coding	0.040000	0.512438	
mm_155525.1	chrX	74270760	74270960	+	1	NA	NA	NA	44	NM_052835	110954	Mm.100113	NM_052835	ENSMUSG00000008682	Rpl10	D0HXS648|DXHXS648|DXHXS648E|QM|QM16	ribosomal protein L10	protein-coding	0.060000	0.477612	-36(GCCTATATAAGG,-,0.00)
mm_122793.1	chr14	54417752	54417952	-	1	NA	NA	NA	-150	NM_011405	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.040000	0.616915	
mm_38958.1	chr4	150686413	150686613	-	1	NA	NA	NA	-34339	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.000000	0.462687	64(GCCCCTATAGGC,-,0.00)
mm_117443.1	chr13	74754254	74754454	-	1	NA	NA	NA	16382	NM_001301156	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.005000	0.477612	
mm_31516.1	chr4	53835023	53835223	+	1	NA	NA	NA	9078	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.010000	0.447761	
mm_157771.1	chrX	73717736	73717936	-	1	NA	NA	NA	-21	NM_001313698	27061	Mm.17	NM_012060	ENSMUSG00000002015	Bcap31	Bap31	B cell receptor associated protein 31	protein-coding	0.045000	0.621891	
mm_153320.1	chr19	38118213	38118413	-	1	NA	NA	NA	6498	NM_011255	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.020000	0.572139	
mm_57593.1	chr6	127769235	127769435	-	1	NA	NA	NA	-176	NM_201371	381813	Mm.39750	NM_201371	ENSMUSG00000030350	Prmt8	Hrmt1l3|Hrmt1l4	protein arginine N-methyltransferase 8	protein-coding	0.135000	0.796020	
mm_51443.1	chr6	80173701	80173901	+	1	NA	NA	NA	154158	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.005000	0.482587	
mm_89609.1	chr10	96023875	96024075	+	1	NA	NA	NA	83312	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.005000	0.427861	
mm_157414.1	chrX	38442033	38442233	-	1	NA	NA	NA	14327	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.010000	0.328358	47(GCCTTTATGCAG,+,0.00)
mm_134093.1	chr16	9571870	9572070	-	1	NA	NA	NA	420563	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.000000	0.402985	
mm_124018.1	chr14	76515428	76515628	-	1	NA	NA	NA	5327	NR_045660	75789	Mm.159571	NR_045660	ENSMUSG00000097172	4930444M15Rik	-	RIKEN cDNA 4930444M15 gene	ncRNA	0.010000	0.537313	
mm_53044.1	chr6	124701530	124701730	+	1	NA	NA	NA	10548	NM_013536	14791	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0.010000	0.517413	
mm_39549.1	chr5	21737061	21737261	+	1	NA	NA	NA	1	NM_028431	73078	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	0.070000	0.611940	
mm_38421.1	chr4	139192526	139192726	-	1	NA	NA	NA	-273	NM_009798	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.085000	0.681592	
mm_98483.1	chr11	94951028	94951228	+	1	NA	NA	NA	14904	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.070000	0.587065	
mm_101664.1	chr11	36686148	36686348	-	1	NA	NA	NA	257993	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.015000	0.378109	
mm_14340.1	chr2	129592954	129593154	+	1	NA	NA	NA	-115	NM_001291019	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.145000	0.751244	
mm_122385.1	chr14	40899273	40899473	-	1	NA	NA	NA	-6408	NM_177816	328381	Mm.235694	NM_177816	ENSMUSG00000037833	Sh2d4b	A430109M18Rik|D030001E08	SH2 domain containing 4B	protein-coding	0.020000	0.497512	
mm_163530.1	chr13	8996083	8996283	+	1	NA	NA	NA	-171	NM_027000	69237	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0.085000	0.611940	
mm_14309.1	chr2	129130062	129130262	+	1	NA	NA	NA	462	NM_025395	66170	Mm.40621	NM_025395	ENSMUSG00000037938	Chchd5	1110027L01Rik|AW045710	coiled-coil-helix-coiled-coil-helix domain containing 5	protein-coding	0.015000	0.512438	
mm_95190.1	chr11	42466898	42467098	+	1	NA	NA	NA	45648	NM_001347314	14401	Mm.338723	NM_008070	ENSMUSG00000007653	Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding	0.005000	0.318408	
mm_18326.1	chr2	57123964	57124164	-	1	NA	NA	NA	-61	NM_001139509	18227	Mm.3507	NM_013613	ENSMUSG00000026826	Nr4a2	HZF-3|NOT|Nurr1|RNR-1|TINOR|TINUR	nuclear receptor subfamily 4, group A, member 2	protein-coding	0.190000	0.840796	
mm_164723.1	chr17	57045486	57045686	-	1	NA	NA	NA	-3932	NM_175333	103775	Mm.33647	NM_175333	ENSMUSG00000011486	Slc25a41	4933406J04Rik|AI507137	solute carrier family 25, member 41	protein-coding	0.030000	0.592040	
mm_18195.1	chr2	45117223	45117423	-	1	NA	NA	NA	-4044	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.075000	0.651741	
mm_44184.1	chr5	151371276	151371476	+	1	NA	NA	NA	2701	NR_045699	625175	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0.000000	0.363184	
mm_90455.1	chr10	127725280	127725480	+	1	NA	NA	NA	-12	NM_009312	21334	Mm.2374	NM_009312	ENSMUSG00000025400	Tac2	PPT-B|Tac3	tachykinin 2	protein-coding	0.000000	0.601990	
mm_35196.1	chr4	16163399	16163599	-	1	NA	NA	NA	144	NM_138952	192656	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.140000	0.800995	
mm_31547.1	chr4	55540084	55540284	+	1	NA	NA	NA	-7709	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.025000	0.422886	
mm_117794.1	chr13	97198178	97198378	-	1	NA	NA	NA	79	NM_010422	15212	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.085000	0.681592	
mm_29018.1	chr3	101924190	101924390	-	1	NA	NA	NA	163	NM_001039371	242126	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	0.145000	0.791045	
mm_73281.1	chr8	104831495	104831695	+	1	NA	NA	NA	-49	NM_198171	234669	Mm.443387	NM_198171	ENSMUSG00000050097	Ces2b	-	carboxyesterase 2B	protein-coding	0.020000	0.487562	
mm_70147.1	chr7	143458848	143459048	-	1	NA	NA	NA	2102	NM_009876	12577	Mm.168789	NM_009876	ENSMUSG00000037664	Cdkn1c	AL024410|CDKI|Kip2|p57(kip2)|p57Kip2	cyclin-dependent kinase inhibitor 1C (P57)	protein-coding	0.040000	0.532338	
mm_170903.1	chr2	30070124	30070324	+	1	NA	NA	NA	3750	NM_001204875	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.020000	0.442786	
mm_51706.1	chr6	86668725	86668925	+	1	NA	NA	NA	334	NM_010751	17119	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.130000	0.756219	
mm_37619.1	chr4	127061035	127061235	-	1	NA	NA	NA	-3	NM_026670	68310	Mm.273806	NM_026670	ENSMUSG00000043872	Zmym1	5830412B09Rik|AW209050	zinc finger, MYM domain containing 1	protein-coding	0.100000	0.681592	
mm_82294.1	chr9	7836743	7836943	-	1	NA	NA	NA	-37	NM_001291503	11797	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.050000	0.557214	
mm_73316.1	chr8	105225082	105225282	+	1	NA	NA	NA	-6	NM_145604	234678	Mm.27186	NM_145604	ENSMUSG00000031889	D230025D16Rik	BC006874|Lin10	RIKEN cDNA D230025D16 gene	protein-coding	0.075000	0.621891	
mm_169884.1	chr16	43143157	43143357	-	1	NA	NA	NA	-104027	NM_181058	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.035000	0.502488	
mm_89297.1	chr10	87913574	87913774	+	1	NA	NA	NA	52563	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.025000	0.547264	
mm_91821.1	chr10	56115435	56115635	-	1	NA	NA	NA	8618	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding	0.105000	0.691542	
mm_18186.1	chr2	45111989	45112189	-	1	NA	NA	NA	-171	NR_110571	433424	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|OTTMUSG00000012358|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0.015000	0.378109	
mm_24090.1	chr3	87976014	87976214	+	1	NA	NA	NA	5021	NM_016701	18008	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46	nestin	protein-coding	0.005000	0.447761	45(GCCCAGAAAAAG,-,0.00)
mm_59000.1	chr7	19176571	19176771	+	1	NA	NA	NA	250	NM_001347582	72205	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0.085000	0.721393	
mm_62942.1	chr7	119526090	119526290	+	1	NA	NA	NA	-75	NM_178758	272428	Mm.185183	NM_178758	ENSMUSG00000030972	Acsm5	C730019D22|C730027J19Rik	acyl-CoA synthetase medium-chain family member 5	protein-coding	0.005000	0.507463	
mm_58809.1	chr7	16399511	16399711	+	1	NA	NA	NA	-1585	NM_198631	330474	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.060000	0.557214	
mm_2721.1	chr1	128171555	128171755	+	1	NA	NA	NA	-30706	NR_029543	387147		NR_029543	ENSMUSG00000065520	Mir128-1	Mirn128|Mirn128-1|Mirn128a|mir-128-1	microRNA 128-1	ncRNA	0.000000	0.263682	
mm_172144.1	chr6	37686712	37686912	-	1	NA	NA	NA	156639	NM_145364	208665	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0.045000	0.507463	
mm_72498.1	chr8	83740271	83740471	+	1	NA	NA	NA	940	NM_001163029	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.025000	0.587065	
mm_57852.1	chr6	129471388	129471588	-	1	NA	NA	NA	1291	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.010000	0.333333	-20(GCTTATATGCGT,+,0.00)
mm_75364.1	chr8	45294713	45294913	-	1	NA	NA	NA	22	NM_008455	16621	Mm.482691	NM_008455	ENSMUSG00000109764	Klkb1	APS|Kal-3|Kal3|Klk3|PSA	kallikrein B, plasma 1	protein-coding	0.025000	0.482587	
mm_62562.1	chr7	103870849	103871049	+	1	NA	NA	NA	11292	NM_013618	18367	Mm.445781	NM_013618	ENSMUSG00000058200	Olfr66	5'[b]1|5'beta1|MOR1-3|ORL532	olfactory receptor 66	protein-coding	0.000000	0.422886	-32(GACTAGTAAAGG,-,0.00)
mm_83806.1	chr9	53536556	53536756	-	1	NA	NA	NA	15	NM_007499	11920	Mm.5088	NM_007499	ENSMUSG00000034218	Atm	AI256621|C030026E19Rik	ataxia telangiectasia mutated	protein-coding	0.100000	0.611940	-16(CTTTATAGAGCC,+,0.00)
mm_52224.1	chr6	103511265	103511465	+	1	NA	NA	NA	489	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.030000	0.557214	
mm_142073.1	chr17	35700401	35700601	-	1	NA	NA	NA	89	NM_001198833	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.130000	0.791045	
mm_77443.1	chr8	121792087	121792287	-	1	NA	NA	NA	37382	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.020000	0.497512	
mm_90515.1	chr10	128043115	128043315	+	1	NA	NA	NA	7869	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.005000	0.572139	
mm_67993.1	chr7	100894519	100894719	-	1	NA	NA	NA	-12210	NR_037289	100526508		NR_037289	ENSMUSG00000093296	Mir3102	mmu-mir-3102	microRNA 3102	ncRNA	0.100000	0.716418	
mm_162814.1	chr10	79694497	79694697	+	1	NA	NA	NA	771	NM_001302499	16904	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	0.015000	0.577114	
mm_86993.1	chr10	26107650	26107850	+	1	NA	NA	NA	-28698	NM_029881	77220	Mm.266260	NM_029881	ENSMUSG00000049420	Tmem200a	C030003D03Rik	transmembrane protein 200A	protein-coding	0.065000	0.527363	
mm_11543.1	chr2	32646525	32646725	+	1	NA	NA	NA	30	NM_001146348	13805	Mm.225297	NM_007932	ENSMUSG00000026814	Eng	AI528660|AI662476|CD105|Endo|S-endoglin	endoglin	protein-coding	0.045000	0.656716	
mm_169281.1	chr1	39519439	39519639	+	1	NA	NA	NA	-16263	NM_028043	52846	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0.035000	0.482587	
mm_86298.1	chr9	122305320	122305520	-	1	NA	NA	NA	-10997	NM_133979	102566	Mm.87676	NM_133979	ENSMUSG00000037949	Ano10	AI604832|Tmem16k	anoctamin 10	protein-coding	0.005000	0.537313	
mm_43658.1	chr5	138622766	138622966	+	1	NA	NA	NA	7	NM_183025	243308	Mm.36612	NM_183025	ENSMUSG00000056014	A430033K04Rik	C86988	RIKEN cDNA A430033K04 gene	protein-coding	0.045000	0.577114	
mm_156454.1	chrX	142738981	142739181	+	1	NA	NA	NA	81	NR_030523	723976		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	0.045000	0.497512	
mm_130870.1	chr15	102224363	102224563	-	1	NA	NA	NA	7472	NM_013566	16421	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0.050000	0.592040	
mm_26903.1	chr3	19311192	19311392	-	1	NA	NA	NA	30	NM_001122759	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.160000	0.776119	
mm_30607.1	chr4	6394840	6395040	+	1	NA	NA	NA	29260	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.005000	0.393035	
mm_69993.1	chr7	142385448	142385648	-	1	NA	NA	NA	2322	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.035000	0.527363	
mm_37852.1	chr4	132211995	132212195	-	1	NA	NA	NA	161	NM_145393	213541	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH domain family 2	protein-coding	0.155000	0.741294	
mm_55485.1	chr6	69185312	69185512	-	1	NA	NA	NA	141762	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.358209	-95(GTGTTTATAAGC,-,0.00),-15(CTGTTTTAAAGC,-,0.00)
mm_103856.1	chr11	83286590	83286790	-	1	NA	NA	NA	36	NM_001166028	237890	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0.000000	0.477612	
mm_47176.1	chr5	120748664	120748864	-	1	NA	NA	NA	1084	NM_145227	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.015000	0.482587	
mm_7870.1	chr1	132707211	132707411	-	1	NA	NA	NA	15	NM_001160318	269116	Mm.326702	NM_182716	ENSMUSG00000026442	Nfasc	AA387016|D430023G06Rik|NF|mKIAA0756	neurofascin	protein-coding	0.040000	0.557214	
mm_78286.1	chr9	22156809	22157009	+	1	NA	NA	NA	63	NM_001082532	66268	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0.110000	0.676617	
mm_6089.1	chr1	63176711	63176911	-	1	NA	NA	NA	11	NM_145518	227197	Mm.290791	NM_145518	ENSMUSG00000025968	Ndufs1	5830412M15Rik|9930026A05Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 1	protein-coding	0.100000	0.587065	
mm_170788.1	chr2	175062320	175062520	+	1	NA	NA	NA	5349	NM_001085546	664987		NM_001085546	ENSMUSG00000078905	Gm14393	OTTMUSG00000016546	predicted gene 14393	protein-coding	0.040000	0.467662	-33(ACTTATATAGCA,+,0.00)
mm_111918.1	chr12	108875446	108875646	-	1	NA	NA	NA	17652	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.010000	0.527363	
mm_87549.1	chr10	53959200	53959400	+	1	NA	NA	NA	116496	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.000000	0.398010	
mm_16351.1	chr2	174346499	174346699	+	1	NA	NA	NA	16510	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.005000	0.333333	
mm_17449.1	chr2	28555784	28555984	-	1	NA	NA	NA	7519	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.000000	0.407960	
mm_28516.1	chr3	92584345	92584545	-	1	NA	NA	NA	4579	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.005000	0.582090	
mm_41467.1	chr5	91137944	91138144	+	1	NA	NA	NA	-1555	NM_009704	11839	Mm.8039	NM_009704	ENSMUSG00000029378	Areg	AR|Mcub|Sdgf	amphiregulin	protein-coding	0.000000	0.437811	61(GTCCTGAAAAGG,-,0.00)
mm_93425.1	chr10	108879649	108879849	-	1	NA	NA	NA	131226	NM_009306	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding	0.025000	0.487562	
mm_70791.1	chr8	22506482	22506682	+	1	NA	NA	NA	-29703	NM_001146117	102032	Mm.378231	NM_001012667	ENSMUSG00000031534	Smim19	AI316807|BG694986|EST-c39	small integral membrane protein 19	protein-coding	0.030000	0.442786	
mm_26335.1	chr3	142546861	142547061	+	1	NA	NA	NA	-13091	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.010000	0.412935	
mm_133135.1	chr16	66288445	66288645	+	1	NA	NA	NA	-368573	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0.000000	0.298507	
mm_126471.1	chr15	81400074	81400274	+	1	NA	NA	NA	-14	NM_177310	321003	Mm.390833	NM_177310	ENSMUSG00000022401	Xpnpep3	APP3|E430012M05Rik	X-prolyl aminopeptidase 3, mitochondrial	protein-coding	0.075000	0.631841	
mm_69305.1	chr7	128393536	128393736	-	1	NA	NA	NA	24536	NM_026418	67865	Mm.18635	NM_026418	ENSMUSG00000030844	Rgs10	2310010N19Rik	regulator of G-protein signalling 10	protein-coding	0.005000	0.502488	
mm_24489.1	chr3	92339039	92339239	+	1	NA	NA	NA	-1	NM_011470	20758	Mm.87820	NM_011470	ENSMUSG00000042212	Sprr2d	-	small proline-rich protein 2D	protein-coding	0.015000	0.457711	
mm_61196.1	chr7	63936531	63936731	+	1	NA	NA	NA	2284	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.030000	0.562189	
mm_97912.1	chr11	83500013	83500213	+	1	NA	NA	NA	21986	NM_001045543	629303	Mm.390417	NM_001045543	ENSMUSG00000018925	Heatr9	Gm11435|OTTMUSG00000000990	HEAT repeat containing 9	protein-coding	0.005000	0.333333	
mm_80347.1	chr9	75173967	75174167	+	1	NA	NA	NA	-57947	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.025000	0.432836	
mm_94719.1	chr11	20593943	20594143	+	1	NA	NA	NA	-37934	NM_001038625	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.000000	0.338308	88(GGCCATAAATAG,-,0.00)
mm_9873.1	chr1	185085860	185086060	-	1	NA	NA	NA	-86411	NM_145515	226778	Mm.7445	NM_145515	ENSMUSG00000026620	Mark1	AW491150|B930025N23Rik|Emk3|Par-1c|mKIAA1477|mPar-1c	MAP/microtubule affinity regulating kinase 1	protein-coding	0.005000	0.447761	
mm_102147.1	chr11	53632055	53632255	-	1	NA	NA	NA	2547	NM_008355	16163	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	0.035000	0.522388	
mm_166576.1	chr6	52118302	52118502	+	1	NA	NA	NA	15453	NR_110440	102635415	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|OTTMUSG00000018881|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA	0.020000	0.492537	
mm_105762.1	chr11	109580775	109580975	-	1	NA	NA	NA	30514	NM_145940	52639	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0.005000	0.537313	
mm_81243.1	chr9	107961406	107961606	+	1	NA	NA	NA	10543	NM_011634	22036	Mm.297870	NM_011634	ENSMUSG00000032586	Traip	Trip	TRAF-interacting protein	protein-coding	0.020000	0.542289	
mm_66482.1	chr7	45017148	45017348	-	1	NA	NA	NA	-759	NM_009101	20130	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.045000	0.537313	
mm_152898.1	chr19	24961488	24961688	-	1	NA	NA	NA	28	NR_033744	226043	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	0.085000	0.606965	
mm_48159.1	chr5	137152413	137152613	-	1	NA	NA	NA	-36306	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.487562	
mm_3969.1	chr1	164151934	164152134	+	1	NA	NA	NA	183	NR_037987	100503816	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	0.040000	0.631841	
mm_69364.1	chr7	130547212	130547412	-	1	NA	NA	NA	69	NM_001162855	67872	Mm.21714	NM_001162855	ENSMUSG00000040331	Nsmce4a	2410003A14Rik	NSE4 homolog A, SMC5-SMC6 complex component	protein-coding	0.135000	0.726368	
mm_173034.1	chrX	105929195	105929395	-	1	NA	NA	NA	77	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.060000	0.577114	
mm_37766.1	chr4	129696755	129696955	-	1	NA	NA	NA	-17	NM_199305	230770	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	0.100000	0.631841	-46(GCCCCTTTAAGA,-,0.00),-44(CCCTTTAAGAAG,-,0.00),-43(CCTTTAAGAAGC,+,0.00)
mm_127005.1	chr15	95800562	95800762	+	1	NA	NA	NA	9819	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.015000	0.527363	
mm_81671.1	chr9	111029499	111029699	+	1	NA	NA	NA	10307	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.015000	0.517413	
mm_143878.1	chr17	84187847	84188047	-	1	NA	NA	NA	0	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.145000	0.761194	-31(CTGTATAAAGGG,-,0.00)
mm_146349.1	chr18	82554430	82554630	+	1	NA	NA	NA	22	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.040000	0.597015	
mm_143776.1	chr17	81707500	81707700	-	1	NA	NA	NA	30787	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.467662	
mm_128738.1	chr15	64304907	64305107	-	1	NA	NA	NA	7666	NM_001276462	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.000000	0.412935	
mm_88669.1	chr10	80017577	80017777	+	1	NA	NA	NA	762	NM_001347074	70719	Mm.243954	NM_027521	ENSMUSG00000035697	Hmha1	6330406L22Rik|AW539505|Ha-1	histocompatibility (minor) HA-1	protein-coding	0.010000	0.567164	
mm_142691.1	chr17	47754139	47754339	-	1	NA	NA	NA	16308	NM_001161723	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.020000	0.626866	
mm_14486.1	chr2	131855273	131855473	+	1	NA	NA	NA	4374	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	0.005000	0.472637	
mm_159665.1	chr4	152158767	152158967	+	1	NA	NA	NA	0	NM_001301805	15206	Mm.57038	NM_008236	ENSMUSG00000028940	Hes2	HES-2	hairy and enhancer of split 2 (Drosophila)	protein-coding	0.055000	0.606965	
mm_145949.1	chr18	67401742	67401942	+	1	NA	NA	NA	11111	NM_026473	67951	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	0.045000	0.601990	
mm_129108.1	chr15	76051829	76052029	-	1	NA	NA	NA	12959	NR_105917	102466772		NR_105917	ENSMUSG00000098451	Mir6952	Gm27948|mmu-mir-6952	microRNA 6952	ncRNA	0.005000	0.552239	
mm_56870.1	chr6	118562153	118562353	-	1	NA	NA	NA	3	NM_001081112	232339	Mm.276116	NM_001081112	ENSMUSG00000007827	Ankrd26	5730521P14Rik|BC008111|mKIAA1074	ankyrin repeat domain 26	protein-coding	0.090000	0.636816	46(TGCTTTAAAAAC,-,0.00),47(GCTTTAAAAACC,+,0.00)
mm_146237.1	chr18	77185969	77186169	+	1	NA	NA	NA	222	NM_013666	225742	Mm.365178	NM_013666	ENSMUSG00000025425	St8sia5	ST8SiaV|Siat8e	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding	0.100000	0.656716	
mm_24988.1	chr3	97032328	97032528	+	1	NA	NA	NA	26	NM_008121	14613	Mm.281816	NM_008121	ENSMUSG00000057123	Gja5	5730555N10Rik|Cnx40|Cx40|Gja-5	gap junction protein, alpha 5	protein-coding	0.010000	0.512438	73(AACTTTAAAAGC,-,0.00)
mm_21275.1	chr2	156887099	156887299	-	1	NA	NA	NA	-121	NM_029983	77799	Mm.29264	NM_029983	ENSMUSG00000027636	Sla2	A930009E21Rik|AI430952|SLAP-2|SLAP2	Src-like-adaptor 2	protein-coding	0.025000	0.592040	
mm_80260.1	chr9	72842658	72842858	+	1	NA	NA	NA	35484	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.020000	0.437811	
mm_7199.1	chr1	93015910	93016110	-	1	NA	NA	NA	9676	NM_001159658	208760	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0.015000	0.507463	
mm_138674.1	chr17	35909642	35909842	+	1	NA	NA	NA	326	NM_001142745	73242	Mm.273155	NM_028476	ENSMUSG00000024426	Atat1	0610011P08Rik|2610008K08Rik|2610110G12Rik|3110080J08Rik|Mec17|TAT	alpha tubulin acetyltransferase 1	protein-coding	0.030000	0.502488	
mm_156864.1	chrX	164436847	164437047	+	1	NA	NA	NA	-47	NM_026853	68854	Mm.33225	NM_026853	ENSMUSG00000031382	Asb11	1110067L12Rik|1600009D24Rik	ankyrin repeat and SOCS box-containing 11	protein-coding	0.020000	0.402985	
mm_123707.1	chr14	69805385	69805585	-	1	NA	NA	NA	60	NM_153514	246710	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0.130000	0.646766	2(GCGTCTTAAGGC,-,0.00)
mm_140939.1	chr17	24443001	24443201	-	1	NA	NA	NA	0	NM_025718	66705	Mm.29017	NM_025718	ENSMUSG00000024136	Dnase1l2	4733401H14Rik	deoxyribonuclease 1-like 2	protein-coding	0.000000	0.497512	
mm_22087.1	chr2	168766998	168767198	-	1	NA	NA	NA	103	NM_201395	99377	Mm.434054	NM_175303	ENSMUSG00000027547	Sall4	5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20	sal-like 4 (Drosophila)	protein-coding	0.065000	0.552239	
mm_112240.1	chr12	113482358	113482558	-	1	NA	NA	NA	-7107	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.522388	
mm_171267.1	chr3	88284772	88284972	-	1	NA	NA	NA	11966	NM_029801	76927	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	0.030000	0.517413	-34(GAGTATATAAGA,-,0.00)
mm_65376.1	chr7	25087382	25087582	-	1	NA	NA	NA	9693	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.020000	0.492537	54(TCTTTTAAGGCC,+,0.00),55(CTTTTAAGGCCC,+,0.00)
mm_47259.1	chr5	121711367	121711567	-	1	NA	NA	NA	-142	NM_009125	20239	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.115000	0.736318	
mm_126502.1	chr15	81772240	81772440	+	1	NA	NA	NA	27492	NM_001081016	20286	Mm.432075	NM_001081016	ENSMUSG00000022390	Zc3h7b	Gm627|Scrg3|Zc2h7b|mKIAA1031	zinc finger CCCH type containing 7B	protein-coding	0.010000	0.497512	
mm_31391.1	chr4	48043745	48043945	+	1	NA	NA	NA	-1460	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.025000	0.417910	
mm_131413.1	chr16	14501778	14501978	+	1	NA	NA	NA	-60439	NR_033556	545280	Mm.123679	NR_033556	ENSMUSG00000075395	A630010A05Rik	-	RIKEN cDNA A630010A05 gene	ncRNA	0.010000	0.467662	
mm_136932.1	chr17	13874821	13875021	+	1	NA	NA	NA	-73452	NM_001122977	635895	Mm.388844	NM_001122977	ENSMUSG00000067941	Gm7168	EG635895	predicted gene 7168	protein-coding	0.005000	0.502488	
mm_18531.1	chr2	63184460	63184660	-	1	NA	NA	NA	-273	NM_133207	170738	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.020000	0.577114	
mm_91960.1	chr10	61147535	61147735	-	1	NA	NA	NA	49	NM_009163	20397	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.120000	0.751244	
mm_25979.1	chr3	133309990	133310190	+	1	NA	NA	NA	-20	NM_001293641	74776	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0.135000	0.761194	
mm_65489.1	chr7	25687172	25687372	-	1	NA	NA	NA	270	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.055000	0.616915	
mm_69174.1	chr7	127217916	127218116	-	1	NA	NA	NA	429	NM_017461	54204	Mm.18	NM_017461	ENSMUSG00000000486	Sept1	Diff6|Pnutl3	septin 1	protein-coding	0.020000	0.572139	
mm_151094.1	chr19	47834841	47835041	+	1	NA	NA	NA	2420	NM_027559	100048534	Mm.29457	NM_027559	ENSMUSG00000044948	Cfap43	4632415N18Rik|4930428C11Rik|4930463G05Rik|AI429486|D19Ertd652e|Wdr96	cilia and flagella associated protein 43	protein-coding	0.020000	0.497512	
mm_27125.1	chr3	31690488	31690688	-	1	NA	NA	NA	-212115	NM_028231	72413	Mm.64790	NM_028231	ENSMUSG00000037610	Kcnmb2	2700049B16Rik|3110031N04Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 2	protein-coding	0.005000	0.442786	
mm_88038.1	chr10	67535568	67535768	+	1	NA	NA	NA	-2201	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.085000	0.646766	
mm_22200.1	chr2	173436626	173436826	-	1	NA	NA	NA	-85866	NM_028158	72221	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0.000000	0.512438	
mm_134916.1	chr16	30310729	30310929	-	1	NA	NA	NA	-48	NM_008148	14729	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	0.000000	0.407960	
mm_9205.1	chr1	171229641	171229841	-	1	NA	NA	NA	4608	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.010000	0.457711	
mm_56570.1	chr6	102564345	102564545	-	1	NA	NA	NA	-99778	NM_008779	18488	Mm.435479	NM_008779	ENSMUSG00000030075	Cntn3	Pang	contactin 3	protein-coding	0.095000	0.736318	
mm_66020.1	chr7	30603482	30603682	-	1	NA	NA	NA	9152	NM_026815	109637	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	0.015000	0.567164	
mm_24477.1	chr3	90695938	90696138	+	1	NA	NA	NA	-317	NM_009114	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.015000	0.502488	
mm_84696.1	chr9	72407020	72407220	-	1	NA	NA	NA	-31409	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.010000	0.457711	
mm_56408.1	chr6	97205426	97205626	-	1	NA	NA	NA	121	NM_001301858	22200	Mm.277626	NM_011666	ENSMUSG00000030061	Uba3	A830034N06Rik|AI256736|AI848246|AW546539|Ube1c	ubiquitin-like modifier activating enzyme 3	protein-coding	0.105000	0.696517	
mm_68178.1	chr7	103851721	103851921	-	1	NA	NA	NA	1386	NM_008221	15135	Mm.440164	NM_008221	ENSMUSG00000052187	Hbb-y	Ey|Hby	hemoglobin Y, beta-like embryonic chain	protein-coding	0.010000	0.472637	
mm_90494.1	chr10	128033554	128033754	+	1	NA	NA	NA	-1692	NM_013608	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.005000	0.457711	
mm_87418.1	chr10	50620704	50620904	+	1	NA	NA	NA	28135	NM_198007	77987	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.000000	0.278607	
mm_48937.1	chr6	4538581	4538781	+	1	NA	NA	NA	33063	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.015000	0.457711	
mm_99478.1	chr11	102604426	102604626	+	1	NA	NA	NA	95	NM_020510	57265	Mm.36416	NM_020510	ENSMUSG00000050288	Fzd2	AL033370|AW456835|Fz10|Fzd10|Mfz10|Mfz10a	frizzled class receptor 2	protein-coding	0.100000	0.701493	
mm_137762.1	chr17	29489709	29489909	+	1	NA	NA	NA	-1236	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.060000	0.577114	
mm_70134.1	chr7	143242476	143242676	-	1	NA	NA	NA	53971	NR_001461	63830	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.000000	0.273632	
mm_21557.1	chr2	164087491	164087691	-	1	NA	NA	NA	13413	NM_021420	58231	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.005000	0.492537	
mm_36811.1	chr4	103215039	103215239	-	1	NA	NA	NA	-255	NM_177732	242585	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.130000	0.786070	
mm_96112.1	chr11	60699597	60699797	+	1	NA	NA	NA	7	NM_008502	16897	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	lethal giant larvae homolog 1 (Drosophila)	protein-coding	0.140000	0.771144	
mm_1845.1	chr1	82924816	82925016	+	1	NA	NA	NA	85456	NM_001347077	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.005000	0.547264	
mm_83373.1	chr9	44525870	44526070	-	1	NA	NA	NA	451	NM_007551	12145	Mm.6246	NM_007551	ENSMUSG00000047880	Cxcr5	Blr1|CXC-R5|CXCR-5|Gpcr6|MDR15	chemokine (C-X-C motif) receptor 5	protein-coding	0.005000	0.393035	
mm_54423.1	chr6	33055842	33056042	-	1	NA	NA	NA	4210	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0.010000	0.427861	
mm_108990.1	chr12	102877202	102877402	+	1	NA	NA	NA	1104	NM_172806	238386	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	0.040000	0.482587	
mm_24565.1	chr3	93443826	93444026	+	1	NA	NA	NA	1596	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.060000	0.582090	
mm_64514.1	chr7	143823043	143823243	+	1	NA	NA	NA	-24	NM_007856	13360	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	0.045000	0.512438	-93(CCCTTTAAAGTA,+,0.00)
mm_148096.1	chr18	73836745	73836945	-	1	NA	NA	NA	-21453	NM_145494	107029	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	0.000000	0.442786	
mm_24966.1	chr3	96727494	96727694	+	1	NA	NA	NA	-17	NM_026406	67845	Mm.386792	NM_026406	ENSMUSG00000028098	Rnf115	2610028E05Rik|AU042696|Zfp364	ring finger protein 115	protein-coding	0.115000	0.736318	
mm_56628.1	chr6	112900290	112900490	-	1	NA	NA	NA	46876	NM_080448	259302	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	0.005000	0.467662	
mm_17565.1	chr2	30205635	30205835	-	1	NA	NA	NA	-36	NM_172404	70266	Mm.216089	NM_172404	ENSMUSG00000039648	Kyat1	2010009K05Rik|AI182306|Ccbl1|Gtk|Kat1|KatI	kynurenine aminotransferase 1	protein-coding	0.040000	0.532338	-80(GTCTTTAAAGGG,+,0.00),-80(GTCTTTAAAGGG,-,0.00),-79(TCTTTAAAGGGC,+,0.00),11(GCCTCTTTAAAG,-,0.00),12(CCTCTTTAAAGG,-,0.00),13(CTCTTTAAAGGA,+,0.00),13(CTCTTTAAAGGA,-,0.00)
mm_22518.1	chr3	7626823	7627023	+	1	NA	NA	NA	-13163	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.005000	0.353234	
mm_52767.1	chr6	121027418	121027618	+	1	NA	NA	NA	-36946	NR_138098	100043793	Mm.448053	NR_138098		Gm4651	-	predicted gene 4651	ncRNA	0.005000	0.487562	
mm_31694.1	chr4	62388634	62388834	+	1	NA	NA	NA	19889	NM_139291	66440	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	0.005000	0.487562	
mm_134151.1	chr16	10785434	10785634	-	1	NA	NA	NA	2	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.100000	0.721393	
mm_63472.1	chr7	127603100	127603300	+	1	NA	NA	NA	1245	NR_027915	68232	Mm.347960	NM_026628	ENSMUSG00000099579	1700120K04Rik	-	RIKEN cDNA 1700120K04 gene	ncRNA	0.005000	0.517413	
mm_114293.1	chr13	58807793	58807993	+	1	NA	NA	NA	196	NM_001025074	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.100000	0.701493	
mm_1453.1	chr1	67230594	67230794	+	1	NA	NA	NA	107667	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.333333	
mm_33582.1	chr4	132535464	132535664	+	1	NA	NA	NA	5	NM_172400	68598	Mm.29685	NM_172400	ENSMUSG00000054405	Dnajc8	1110021D09Rik|2010009J04Rik|AL024084|AU019262|AU044514	DnaJ heat shock protein family (Hsp40) member C8	protein-coding	0.075000	0.606965	
mm_159860.1	chr5	140611769	140611969	+	1	NA	NA	NA	4528	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.025000	0.592040	
mm_170980.1	chr2	71420222	71420422	+	1	NA	NA	NA	5846	NR_039557	100628577		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.000000	0.393035	
mm_80449.1	chr9	77979736	77979936	+	1	NA	NA	NA	62471	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.030000	0.487562	
mm_163074.1	chr11	67695304	67695504	+	1	NA	NA	NA	78	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.030000	0.606965	
mm_6431.1	chr1	73962848	73963048	-	1	NA	NA	NA	-98482	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.020000	0.567164	
mm_27964.1	chr3	80688227	80688427	-	1	NA	NA	NA	114464	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.020000	0.402985	
mm_70562.1	chr8	13105523	13105723	+	1	NA	NA	NA	-98	NM_146207	99375	Mm.212861	NM_146207	ENSMUSG00000031446	Cul4a	2810470J21Rik|AW495282	cullin 4A	protein-coding	0.150000	0.761194	
mm_10694.1	chr2	22622381	22622581	+	1	NA	NA	NA	154	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.110000	0.656716	
mm_154484.1	chrM	4542	4742	-	1	NA	NA	NA	NA	NA									0.000000	0.328358	
mm_63355.1	chr7	126978952	126979152	+	1	NA	NA	NA	3138	NM_001347656	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.005000	0.532338	
mm_34913.1	chr4	155705236	155705436	+	1	NA	NA	NA	521	NM_026899	68991	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0.135000	0.641791	
mm_68738.1	chr7	121064076	121064276	-	1	NA	NA	NA	10354	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.000000	0.363184	
mm_12940.1	chr2	85136354	85136554	+	1	NA	NA	NA	94	NM_011784	23796	Mm.29368	NM_011784	ENSMUSG00000044338	Aplnr	APJ|Agtrl1|msr/apj	apelin receptor	protein-coding	0.020000	0.577114	
mm_32393.1	chr4	106622435	106622635	+	1	NA	NA	NA	86	NM_177667	230576	Mm.41945	NM_177667	ENSMUSG00000034919	Ttc22	4732467L16Rik	tetratricopeptide repeat domain 22	protein-coding	0.060000	0.681592	
mm_63331.1	chr7	126950411	126950611	+	1	NA	NA	NA	-24	NM_144926	233878	Mm.283926	NM_144926	ENSMUSG00000030683	Sez6l2	AI835913|AW121566|BSRP-A|Psk1	seizure related 6 homolog like 2	protein-coding	0.035000	0.597015	
mm_45207.1	chr5	52992158	52992358	-	1	NA	NA	NA	34	NR_040413	75954	Mm.258937	NR_040413	ENSMUSG00000106352	5033403H07Rik	-	RIKEN cDNA 5033403H07 gene	ncRNA	0.010000	0.487562	
mm_145963.1	chr18	67775645	67775845	+	1	NA	NA	NA	869	NM_001039088	72124	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	0.025000	0.432836	
mm_60899.1	chr7	46427537	46427737	+	1	NA	NA	NA	31169	NM_001112739	16502	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.065000	0.562189	
mm_51035.1	chr6	65590357	65590557	+	1	NA	NA	NA	59	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.020000	0.393035	69(CACTATAAGAGC,-,0.00)
mm_53817.1	chr6	147073412	147073612	+	1	NA	NA	NA	13520	NM_001034903	545893	Mm.224739	NM_001034903	ENSMUSG00000072662	Mansc4	A430079E08|EG545893|Gm5887	MANSC domain containing 4	protein-coding	0.005000	0.378109	
mm_70263.1	chr8	3536722	3536922	+	1	NA	NA	NA	21438	NM_015801	50767	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0.020000	0.547264	
mm_140507.1	chr17	5440146	5440346	-	1	NA	NA	NA	14	NM_027457	70544	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	0.050000	0.557214	
mm_150988.1	chr19	46516181	46516381	+	1	NA	NA	NA	14633	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.010000	0.368159	
mm_22733.1	chr3	19691838	19692038	+	1	NA	NA	NA	3458	NM_205769	12918	Mm.290689	NM_205769	ENSMUSG00000049796	Crh	CRF|Gm1347	corticotropin releasing hormone	protein-coding	0.005000	0.467662	
mm_47000.1	chr5	115348558	115348758	-	1	NA	NA	NA	297	NM_007748	12861	Mm.43415	NM_007748	ENSMUSG00000041697	Cox6a1	VIaL	cytochrome c oxidase subunit VIa polypeptide 1	protein-coding	0.095000	0.666667	
mm_54396.1	chr6	31399310	31399510	-	1	NA	NA	NA	582	NM_013791	27418	Mm.238038	NM_013791	ENSMUSG00000025609	Mkln1	A130067F06Rik|AU015903|BB154892	muskelin 1, intracellular mediator containing kelch motifs	protein-coding	0.055000	0.616915	
mm_169886.1	chr16	45056279	45056479	-	1	NA	NA	NA	-37674	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.035000	0.497512	
mm_139937.1	chr17	71107435	71107635	+	1	NA	NA	NA	-76443	NM_022882	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.000000	0.407960	44(GCTTATATACAC,+,0.00)
mm_41032.1	chr5	86071454	86071654	+	1	NA	NA	NA	-192	NM_019992	56792	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.015000	0.412935	34(GCCTTTTAAAAG,-,0.00),35(CCTTTTAAAAGT,+,0.00)
mm_70930.1	chr8	25813523	25813723	+	1	NA	NA	NA	5149	NM_011485	20845	Mm.293314	NM_011485	ENSMUSG00000031574	Star	AV363654|D8Ertd419e|stARD1	steroidogenic acute regulatory protein	protein-coding	0.005000	0.412935	
mm_145440.1	chr18	59063595	59063795	+	1	NA	NA	NA	1314	NR_033765	225583	Mm.209711	NM_173759	ENSMUSG00000050875	A730017C20Rik	-	RIKEN cDNA A730017C20 gene	protein-coding	0.000000	0.253731	
mm_80084.1	chr9	70207249	70207449	+	1	NA	NA	NA	-1	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.045000	0.537313	-31(CCATTTATGGAC,+,0.00)
mm_91366.1	chr10	29313292	29313492	-	1	NA	NA	NA	-108	NM_025855	52665	Mm.28930	NM_025855	ENSMUSG00000019883	Echdc1	1700028A24Rik|AI314462|AI930038|D10Ertd667e|MMCD	enoyl Coenzyme A hydratase domain containing 1	protein-coding	0.100000	0.721393	
mm_71339.1	chr8	45579845	45580045	+	1	NA	NA	NA	-47806	NM_001310707	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.025000	0.482587	
mm_9673.1	chr1	178329086	178329286	-	1	NA	NA	NA	8598	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.015000	0.338308	-90(CTTTTTAAACAT,+,0.00)
mm_83195.1	chr9	41075620	41075820	-	1	NA	NA	NA	-71092	NM_019465	54698	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	0.010000	0.417910	
mm_37650.1	chr4	128787113	128787313	-	1	NA	NA	NA	18899	NM_001081098	230761	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.015000	0.601990	
mm_165353.1	chr2	121171482	121171682	+	1	NA	NA	NA	414	NM_001290824	51885	Mm.383499	NM_153387	ENSMUSG00000027263	Tubgcp4	4932441P04Rik|76p|D2Ertd435e|GCP-4	tubulin, gamma complex associated protein 4	protein-coding	0.110000	0.681592	
mm_23852.1	chr3	83008553	83008753	+	1	NA	NA	NA	929	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.030000	0.477612	
mm_156249.1	chrX	136271578	136271778	+	1	NA	NA	NA	1425	NM_001110234	12070	Mm.90787	NM_009750	ENSMUSG00000046432	Bex3	AL033356|DXWsu67e|Gcap27|Nade|Ngfrap1	brain expressed X-linked 3	protein-coding	0.030000	0.492537	61(CCTTTAATGACC,+,0.00)
mm_91776.1	chr10	52194883	52195083	-	1	NA	NA	NA	261	NM_011282	19886	Mm.236163	NM_011282	ENSMUSG00000019893	Ros1	Ros-1|c-ros	Ros1 proto-oncogene	protein-coding	0.005000	0.457711	
mm_75332.1	chr8	43180212	43180412	-	1	NA	NA	NA	-2810	NM_001160412	622117	Mm.390031	NM_001160412	ENSMUSG00000091490	Triml2	EG622117|Tu4	tripartite motif family-like 2	protein-coding	0.005000	0.437811	
mm_52478.1	chr6	114306765	114306965	+	1	NA	NA	NA	24230	NM_178703	232333	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.005000	0.368159	
mm_122301.1	chr14	34673655	34673855	-	1	NA	NA	NA	-173	NM_001004436	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.110000	0.651741	
mm_9418.1	chr1	172326152	172326352	-	1	NA	NA	NA	3011	NM_008429	16524	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	0.110000	0.656716	
mm_133562.1	chr16	91393757	91393957	+	1	NA	NA	NA	-12378	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.015000	0.393035	
mm_109873.1	chr12	4916445	4916645	-	1	NA	NA	NA	-808	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.000000	0.298507	
mm_106126.1	chr11	116425945	116426145	-	1	NA	NA	NA	-8049	NM_176902	319370	Mm.258466	NM_176902	ENSMUSG00000050628	Ubald2	1110014K08Rik|D030012E24Rik|Fam100b	UBA-like domain containing 2	protein-coding	0.020000	0.402985	
mm_10144.1	chr2	4300392	4300592	+	1	NA	NA	NA	-100484	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.040000	0.537313	-88(GTCCTTTTAAGG,-,0.00),-87(TCCTTTTAAGGG,-,0.00),-86(CCTTTTAAGGGA,+,0.00)
mm_133739.1	chr16	93957701	93957901	+	1	NA	NA	NA	-27984	NM_001165926	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.025000	0.427861	
mm_54309.1	chr6	30047839	30048039	-	1	NA	NA	NA	-49	NM_010938	18181	Mm.259258	NM_010938	ENSMUSG00000058440	Nrf1	C87038|D6Ertd415e	nuclear respiratory factor 1	protein-coding	0.150000	0.781095	
mm_27617.1	chr3	59262886	59263086	-	1	NA	NA	NA	-155	NM_027571	70839	Mm.422675	NM_027571	ENSMUSG00000036353	P2ry12	2900079B22Rik|4921504D23Rik|P2Y12	purinergic receptor P2Y, G-protein coupled 12	protein-coding	0.005000	0.393035	
mm_119669.1	chr14	52437012	52437212	+	1	NA	NA	NA	-13281	NM_020514	57271	Mm.88824	NM_020514	ENSMUSG00000035626	Olfr1509	MOR244-3|Mor83|Or83	olfactory receptor 1509	protein-coding	0.000000	0.462687	
mm_134596.1	chr16	20610649	20610849	-	1	NA	NA	NA	0	NM_145939	208624	Mm.24950	NM_145939	ENSMUSG00000033809	Alg3	D16Ertd36e|not	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)	protein-coding	0.060000	0.582090	
mm_5561.1	chr1	38831283	38831483	-	1	NA	NA	NA	-10168	NM_001029878	381338	Mm.487137	NM_028403	ENSMUSG00000048814	Lonrf2	2900060P06Rik|AI851349	LON peptidase N-terminal domain and ring finger 2	protein-coding	0.000000	0.293532	
mm_66420.1	chr7	44531971	44532171	-	1	NA	NA	NA	0	NM_019866	272382	Mm.8012	NM_019866	ENSMUSG00000008193	Spib	Spi-B	Spi-B transcription factor (Spi-1/PU.1 related)	protein-coding	0.010000	0.606965	
mm_28763.1	chr3	95891833	95892033	-	1	NA	NA	NA	72	NM_001346514	229600	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	0.005000	0.502488	12(CTCTTTATAGCC,+,0.00)
mm_819.1	chr1	46425390	46425590	+	1	NA	NA	NA	-28	NM_001310335	100101919	Mm.383402	NM_001310335	ENSMUSG00000101337	Dnah7c	Dnahc7c	dynein, axonemal, heavy chain 7C	protein-coding	0.070000	0.572139	
mm_120526.1	chr14	66911138	66911338	+	1	NA	NA	NA	30	NM_175498	239157	Mm.44358	NM_175498	ENSMUSG00000046204	Pnma2	A830049P17Rik|mKIAA0883	paraneoplastic antigen MA2	protein-coding	0.090000	0.681592	
mm_93487.1	chr10	111997035	111997235	-	1	NA	NA	NA	129	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.015000	0.492537	
mm_44343.1	chr5	17780588	17780788	-	1	NA	NA	NA	55208	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.417910	-20(GAGTCTATAAAG,-,0.00)
mm_25975.1	chr3	133091759	133091959	+	1	NA	NA	NA	4	NM_027927	71793	Mm.246726	NM_027927	ENSMUSG00000028016	Ints12	1110020M19Rik|2810027J24Rik|4930529N21Rik|A230056J18Rik|AI666778|Phf22|int12	integrator complex subunit 12	protein-coding	0.095000	0.587065	
mm_2779.1	chr1	130826616	130826816	+	1	NA	NA	NA	32	NM_011082	18703	Mm.276414	NM_011082	ENSMUSG00000026417	Pigr	-	polymeric immunoglobulin receptor	protein-coding	0.015000	0.502488	-66(GGCCCTTTAAGA,-,0.00),-65(GCCCTTTAAGAG,-,0.00),-64(CCCTTTAAGAGC,+,0.00),-64(CCCTTTAAGAGC,-,0.00),-63(CCTTTAAGAGCC,+,0.00)
mm_161689.1	chr17	21962374	21962574	-	1	NA	NA	NA	-10	NM_001199048	73233	Mm.311219	NM_001199048	ENSMUSG00000071267	Zfp942	3110048L19Rik	zinc finger protein 942	protein-coding	0.075000	0.611940	
mm_16438.1	chr2	180396807	180397007	+	1	NA	NA	NA	-1472	NR_029901	723954		NR_029901	ENSMUSG00000065460	Mir133a-2	Mirn133a-2|mir-133a-2	microRNA 133a-2	ncRNA	0.010000	0.522388	
mm_225.1	chr1	17601824	17602024	+	1	NA	NA	NA	23	NM_053191	94227	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	0.005000	0.417910	-55(ACATATAAAAGC,-,0.00)
mm_135056.1	chr16	33818840	33819040	-	1	NA	NA	NA	-10725	NM_010580	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.020000	0.522388	
mm_160949.1	chr11	97013469	97013669	+	1	NA	NA	NA	0	NM_031183	83395	Mm.156282	NM_031183	ENSMUSG00000038560	Sp6	1110025J03Rik|AA591031|AI592962|Epfn|Klf14	trans-acting transcription factor 6	protein-coding	0.025000	0.577114	-34(TCCTTTATAAAG,-,0.00),-32(CTTTATAAAGCC,+,0.00)
mm_58456.1	chr7	3332091	3332291	+	1	NA	NA	NA	-4394	NM_133189	81904	Mm.214994	NM_133189	ENSMUSG00000069806	Cacng7	-	calcium channel, voltage-dependent, gamma subunit 7	protein-coding	0.030000	0.587065	
mm_38257.1	chr4	136819576	136819776	-	1	NA	NA	NA	16336	NM_001290753	13844	Mm.250981	NM_010142	ENSMUSG00000028664	Ephb2	Cek5|Drt|ETECK|Erk|Hek5|Nuk|Prkm5|Qek5|Sek3|Tyro5	Eph receptor B2	protein-coding	0.015000	0.432836	
mm_156829.1	chrX	164269447	164269647	+	1	NA	NA	NA	116	NM_027153	69656	Mm.293463	NM_027153	ENSMUSG00000031379	Pir	2310042L19Rik|Pirnl	pirin	protein-coding	0.055000	0.621891	
mm_118460.1	chr14	9156871	9157071	+	1	NA	NA	NA	490581	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	0.005000	0.477612	
mm_140713.1	chr17	15239209	15239409	-	1	NA	NA	NA	1474	NR_046164	328747	Mm.256835	NR_046164	ENSMUSG00000097624	Gm5091	C330048F19	predicted gene 5091	ncRNA	0.010000	0.527363	
mm_104416.1	chr11	94677350	94677550	-	1	NA	NA	NA	43	NM_145828	217119	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	0.140000	0.766169	
mm_39057.1	chr4	153974953	153975153	-	1	NA	NA	NA	28	NM_007859	13368	Mm.388918	NM_007859	ENSMUSG00000029027	Dffb	40kDa|5730477D02Rik|CAD|CPAN|DFF40|Didff	DNA fragmentation factor, beta subunit	protein-coding	0.095000	0.606965	
mm_12586.1	chr2	73452729	73452929	+	1	NA	NA	NA	1060	NM_001289722	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.015000	0.487562	
mm_119146.1	chr14	31336589	31336789	+	1	NA	NA	NA	-35	NM_009796	12339	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.115000	0.721393	
mm_79047.1	chr9	46228739	46228939	+	1	NA	NA	NA	209	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.020000	0.532338	
mm_132558.1	chr16	38088953	38089153	+	1	NA	NA	NA	52	NM_019827	56637	Mm.394930	NM_019827	ENSMUSG00000022812	Gsk3b	7330414F15Rik|8430431H08Rik|C86142|GSK-3|GSK-3beta|GSK3	glycogen synthase kinase 3 beta	protein-coding	0.085000	0.606965	
mm_163751.1	chr13	119767629	119767829	+	1	NA	NA	NA	-11847	NM_175538	245269	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0.020000	0.457711	
mm_135707.1	chr16	55283184	55283384	-	1	NA	NA	NA	-47	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0.000000	0.422886	
mm_288.1	chr1	21349585	21349785	+	1	NA	NA	NA	8	NM_183322	368204	Mm.26006	NM_183322	ENSMUSG00000067750	Khdc1a	AU014713|C88118|Ndg1	KH domain containing 1A	protein-coding	0.005000	0.472637	
mm_139042.1	chr17	46227729	46227929	+	1	NA	NA	NA	-3702	NR_030466	751553		NR_030466	ENSMUSG00000076141	Mir693	Mirn693|mir-693|mmu-mir-693	microRNA 693	ncRNA	0.025000	0.497512	
mm_16299.1	chr2	174289409	174289609	+	1	NA	NA	NA	5189	NM_022000	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.010000	0.467662	31(CTTTTTATATGC,+,0.00)
mm_156012.1	chrX	107089224	107089424	+	1	NA	NA	NA	-11	NM_172435	78826	Mm.74639	NM_172435	ENSMUSG00000050921	P2ry10	5830408N17Rik|Lypsr2|P2Y10	purinergic receptor P2Y, G-protein coupled 10	protein-coding	0.010000	0.412935	
mm_61240.1	chr7	65644798	65644998	+	1	NA	NA	NA	0	NM_172310	272396	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0.075000	0.716418	
mm_110599.1	chr12	56535831	56536031	-	1	NA	NA	NA	977	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.070000	0.666667	
mm_141273.1	chr17	27820355	27820555	-	1	NA	NA	NA	87	NM_001033279	224647	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0.160000	0.796020	
mm_7972.1	chr1	134063190	134063390	-	1	NA	NA	NA	15865	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.070000	0.626866	
mm_12432.1	chr2	70661380	70661580	+	1	NA	NA	NA	-29	NR_027343	70231	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|ENSMUSG00000075299|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.155000	0.721393	
mm_110121.1	chr12	26443962	26444162	-	1	NA	NA	NA	12390	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.308458	
mm_34886.1	chr4	155589643	155589843	+	1	NA	NA	NA	-11673	NM_177186	320541	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	0.005000	0.412935	-78(GTTTTTAAAACC,+,0.00)
mm_32922.1	chr4	119136804	119137004	+	1	NA	NA	NA	28159	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.035000	0.552239	
mm_46923.1	chr5	114669799	114669999	-	1	NA	NA	NA	-11478	NM_022017	63873	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.015000	0.547264	-46(CTGTTTAAAAGG,-,0.00)
mm_20686.1	chr2	132601070	132601270	-	1	NA	NA	NA	2974	NR_033469	767814	Mm.371752	NR_033468	ENSMUSG00000074783	AU019990	-	expressed sequence AU019990	ncRNA	0.020000	0.482587	
mm_113521.1	chr13	37809398	37809598	+	1	NA	NA	NA	-16540	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.010000	0.487562	
mm_110859.1	chr12	73409605	73409805	-	1	NA	NA	NA	-142	NR_046013	380765	Mm.490476	NR_046013		D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0.015000	0.547264	
mm_26302.1	chr3	142510108	142510308	+	1	NA	NA	NA	13274	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.015000	0.437811	-16(GGCCTTAAATGC,-,0.00),-14(CCTTAAATGCCC,+,0.00)
mm_135690.1	chr16	52429394	52429594	-	1	NA	NA	NA	23587	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.263682	61(GCCCATTAAAGT,-,0.00)
mm_84031.1	chr9	57764975	57765175	-	1	NA	NA	NA	785	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.120000	0.756219	
mm_125730.1	chr15	73162300	73162500	+	1	NA	NA	NA	22547	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.035000	0.517413	
mm_86424.1	chr10	3788797	3788997	+	1	NA	NA	NA	48520	NM_001159942	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.005000	0.393035	
mm_118226.1	chr13	110941134	110941334	-	1	NA	NA	NA	-37388	NR_131194	102636142	Mm.417611	NR_131194		4930526H09Rik	-	RIKEN cDNA 4930526H09 gene	ncRNA	0.000000	0.313433	
mm_44347.1	chr5	17785694	17785894	-	1	NA	NA	NA	50102	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.383085	
mm_145042.1	chr18	39539250	39539450	+	1	NA	NA	NA	-52105	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.000000	0.398010	
mm_77761.1	chr9	3000049	3000249	+	1	NA	NA	NA	38594	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.010000	0.338308	
mm_102706.1	chr11	66526569	66526769	-	1	NA	NA	NA	-543	NM_001034874	380702	Mm.351764	NM_001034874	ENSMUSG00000053930	Shisa6	Gm879|ckamp52	shisa family member 6	protein-coding	0.150000	0.746269	
mm_53448.1	chr6	134431764	134431964	+	1	NA	NA	NA	35535	NM_025778	66813	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.005000	0.512438	
mm_81359.1	chr9	108682316	108682516	+	1	NA	NA	NA	-9727	NM_008924	19087	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0.030000	0.582090	
mm_10189.1	chr2	4895777	4895977	+	1	NA	NA	NA	14313	NM_175400	109079	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0.010000	0.522388	
mm_45934.1	chr5	89883232	89883432	-	1	NA	NA	NA	2	NM_177872	330119	Mm.133062	NM_177872	ENSMUSG00000043635	Adamts3	1100001H14Rik|6330442E02Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3	protein-coding	0.115000	0.746269	
mm_82379.1	chr9	14634175	14634375	-	1	NA	NA	NA	-19275	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.045000	0.616915	
mm_56213.1	chr6	89357615	89357815	-	1	NA	NA	NA	4898	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.020000	0.577114	
mm_21138.1	chr2	154213974	154214174	-	1	NA	NA	NA	-9668	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.025000	0.562189	
mm_70855.1	chr8	24044381	24044581	+	1	NA	NA	NA	374820	NM_177086	320158	Mm.121274	NM_177086	ENSMUSG00000037492	Zmat4	9630048M01Rik	zinc finger, matrin type 4	protein-coding	0.010000	0.517413	
mm_121083.1	chr14	99099922	99100122	+	1	NA	NA	NA	-252	NM_028315	72662	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	0.055000	0.572139	77(CCTTATATGCGG,+,0.00)
mm_83444.1	chr9	45009167	45009367	-	1	NA	NA	NA	323	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.020000	0.572139	
mm_72001.1	chr8	70673133	70673333	+	1	NA	NA	NA	2	NM_015816	50783	Mm.248188	NM_015816	ENSMUSG00000031848	Lsm4	-	LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.085000	0.582090	
mm_113246.1	chr13	27354017	27354217	+	1	NA	NA	NA	8444	NM_001289919	13529	Mm.291450	NM_010088	ENSMUSG00000018259	Prl8a2	D/tPRP|DPRP|Dtprp|Ghd11|mdPRP	prolactin family 8, subfamily a, member 2	protein-coding	0.005000	0.358209	51(CTCTTTAAAAAA,-,0.00)
mm_39975.1	chr5	32297529	32297729	+	1	NA	NA	NA	-55951	NM_172147	665270	Mm.160067	NM_030072	ENSMUSG00000029134	Plb1	4632413E21Rik|4930433E17Rik|4930539A06Rik|BC033606	phospholipase B1	protein-coding	0.015000	0.422886	
mm_51276.1	chr6	72140863	72141063	+	1	NA	NA	NA	-17766	NR_045165	71265	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.005000	0.517413	
mm_90239.1	chr10	121395245	121395445	+	1	NA	NA	NA	30255	NM_029364	75612	Mm.207683	NM_029364	ENSMUSG00000034707	Gns	2610016K11Rik|AU042285|C87209|G6S|N28088	glucosamine (N-acetyl)-6-sulfatase	protein-coding	0.015000	0.497512	
mm_15320.1	chr2	155747083	155747283	+	1	NA	NA	NA	-4034	NM_011171	19124	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	0.010000	0.507463	
mm_33754.1	chr4	134343049	134343249	+	1	NA	NA	NA	103	NM_001039677	230810	Mm.358876	NM_001039677	ENSMUSG00000028836	Slc30a2	ZnT-2|Znt2	solute carrier family 30 (zinc transporter), member 2	protein-coding	0.110000	0.731343	
mm_126715.1	chr15	85336195	85336395	+	1	NA	NA	NA	-86	NM_016843	54138	Mm.248906	NM_016843	ENSMUSG00000016541	Atxn10	AI325283|C77170|E46|Sca10|TEG-169|Tex169	ataxin 10	protein-coding	0.100000	0.711443	
mm_166151.1	chr5	6818438	6818638	+	1	NA	NA	NA	-485626	NM_027603	70920	Mm.158494	NM_027603	ENSMUSG00000040514	4921511H03Rik	-	RIKEN cDNA 4921511H03 gene	protein-coding	0.000000	0.343284	
mm_148277.1	chr18	81927592	81927792	-	1	NA	NA	NA	64388	NR_039589	100628596		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.045000	0.537313	
mm_48403.1	chr5	140215333	140215533	-	1	NA	NA	NA	106119	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.005000	0.378109	
mm_155804.1	chrX	99043910	99044110	+	1	NA	NA	NA	1429	NM_199018	236920	Mm.236928	NM_199018	ENSMUSG00000031216	Stard8	Dlc3|mKIAA0189	START domain containing 8	protein-coding	0.015000	0.537313	
mm_19375.1	chr2	91194707	91194907	-	1	NA	NA	NA	228	NM_013839	22259	Mm.22690	NM_013839	ENSMUSG00000002108	Nr1h3	AU018371|LXR|RLD1|Unr1	nuclear receptor subfamily 1, group H, member 3	protein-coding	0.035000	0.616915	
mm_114685.1	chr13	81064506	81064706	+	1	NA	NA	NA	100532	NR_015587	319983	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.065000	0.532338	
mm_127538.1	chr15	102104304	102104504	+	1	NA	NA	NA	1416	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.010000	0.557214	
mm_144565.1	chr18	31771871	31772071	+	1	NA	NA	NA	11355	NM_001242430	225339	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0.020000	0.512438	
mm_79656.1	chr9	59656074	59656274	+	1	NA	NA	NA	-194	NM_011099	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.055000	0.636816	
mm_16688.1	chr2	6884787	6884987	-	1	NA	NA	NA	109	NM_010160	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.030000	0.442786	25(CTGCTTTTAAGG,-,0.00),27(GCTTTTAAGGTA,+,0.00)
mm_124591.1	chr15	3274648	3274848	+	1	NA	NA	NA	3771	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.005000	0.507463	
mm_144966.1	chr18	37824508	37824708	+	1	NA	NA	NA	5062	NM_033583	93708	Mm.247203	NM_033583	ENSMUSG00000102543	Pcdhgc5	-	protocadherin gamma subfamily C, 5	protein-coding	0.020000	0.562189	
mm_63949.1	chr7	139894719	139894919	+	1	NA	NA	NA	123	NM_177261	76484	Mm.44442	NM_177261	ENSMUSG00000066129	Kndc1	2410012C07Rik|B830014K08Rik|VKIND|very-kind	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding	0.080000	0.696517	
mm_84833.1	chr9	78347031	78347231	-	1	NA	NA	NA	14	NM_008182	14858	Mm.422778	NM_008182	ENSMUSG00000057933	Gsta2	Gst2-2|Gstc-2|Gstc2	glutathione S-transferase, alpha 2 (Yc2)	protein-coding	0.005000	0.507463	
mm_169216.1	chr13	66698200	66698400	-	1	NA	NA	NA	207050	NM_026219	67530	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	0.020000	0.507463	
mm_172429.1	chr7	28392569	28392769	-	1	NA	NA	NA	21	NM_026042	67224	Mm.41647	NM_026042	ENSMUSG00000003444	Med29	2810405O22Rik|AU020902|Ixl	mediator complex subunit 29	protein-coding	0.065000	0.611940	
mm_159101.1	chr2	36936792	36936992	+	1	NA	NA	NA	-229	NM_146624	258617	Mm.377595	NM_146624	ENSMUSG00000070943	Olfr356	MOR134-1	olfactory receptor 356	protein-coding	0.000000	0.402985	
mm_95592.1	chr11	53332097	53332297	+	1	NA	NA	NA	7508	NM_026479	67966	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0.010000	0.472637	
mm_73836.1	chr8	117460869	117461069	+	1	NA	NA	NA	1704	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.015000	0.338308	
mm_6640.1	chr1	79436239	79436439	-	1	NA	NA	NA	3751	NM_009129	20254	Mm.5038	NM_009129	ENSMUSG00000050711	Scg2	Chgc|SgII	secretogranin II	protein-coding	0.025000	0.507463	
mm_155463.1	chrX	73528594	73528794	+	1	NA	NA	NA	25608	NM_177236	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.015000	0.542289	
mm_126904.1	chr15	89568255	89568455	+	1	NA	NA	NA	29	NM_001277246	11434	Mm.57	NM_013455	ENSMUSG00000022622	Acr	-	acrosin prepropeptide	protein-coding	0.015000	0.577114	
mm_96110.1	chr11	60554853	60555053	+	1	NA	NA	NA	17270	NM_172943	268420	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.010000	0.547264	
mm_83107.1	chr9	40346095	40346295	-	1	NA	NA	NA	12723	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.025000	0.522388	
mm_164543.1	chr17	8371986	8372186	+	1	NA	NA	NA	-310	NM_001161832	21331	Mm.482744	NM_013682		T2	brachyury2	brachyury 2	protein-coding	0.015000	0.562189	
mm_101397.1	chr11	26584676	26584876	-	1	NA	NA	NA	9144	NM_027260	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.000000	0.273632	
mm_138266.1	chr17	34598347	34598547	+	1	NA	NA	NA	597	NR_073173	11596	Mm.3383	NM_007425	ENSMUSG00000015452	Ager	RAGE	advanced glycosylation end product-specific receptor	protein-coding	0.030000	0.567164	
mm_76589.1	chr8	89042545	89042745	-	1	NA	NA	NA	1517	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.075000	0.547264	
mm_124210.1	chr14	99339547	99339747	-	1	NA	NA	NA	40956	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.030000	0.417910	
mm_98516.1	chr11	94952453	94952653	+	1	NA	NA	NA	-15040	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.005000	0.437811	
mm_153358.1	chr19	40173577	40173777	-	1	NA	NA	NA	13609	NM_145499	226105	Mm.29119	NM_145499	ENSMUSG00000060613	Cyp2c70	-	cytochrome P450, family 2, subfamily c, polypeptide 70	protein-coding	0.005000	0.358209	
mm_61398.1	chr7	73375472	73375672	+	1	NA	NA	NA	52	NM_177740	244058	Mm.333943	NM_177740	ENSMUSG00000070509	Rgma	BC059072|C230063O06	repulsive guidance molecule family member A	protein-coding	0.145000	0.771144	
mm_115657.1	chr13	12459026	12459226	-	1	NA	NA	NA	190	NM_001291055	56048	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.005000	0.338308	-82(CCTTAAATAACC,+,0.00)
mm_2167.1	chr1	88259096	88259296	+	1	NA	NA	NA	10212	NR_040291	78605	Mm.384762	NR_040291		6430706D22Rik	-	RIKEN cDNA 6430706D22 gene	ncRNA	0.010000	0.452736	-77(GCCCAGAAAAAG,-,0.00)
mm_116935.1	chr13	55835985	55836185	-	1	NA	NA	NA	-4660	NM_011097	18740	Mm.135195	NM_011097	ENSMUSG00000021506	Pitx1	Bft|P-OTX|Potx|Ptx1	paired-like homeodomain transcription factor 1	protein-coding	0.125000	0.701493	
mm_42692.1	chr5	119835073	119835273	+	1	NA	NA	NA	510	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.020000	0.597015	
mm_37077.1	chr4	116167499	116167699	-	1	NA	NA	NA	-1	NM_133681	66805	Mm.45994	NM_133681	ENSMUSG00000028699	Tspan1	9030418M05Rik	tetraspanin 1	protein-coding	0.030000	0.597015	-32(GTTTTAAAACAC,+,0.00)
mm_37531.1	chr4	124851078	124851278	-	1	NA	NA	NA	419	NM_153566	230734	Mm.258568	NM_153566	ENSMUSG00000028889	Yrdc	AV303379|BC023823|IRIP|ITIP	yrdC domain containing (E.coli)	protein-coding	0.130000	0.756219	
mm_146354.1	chr18	82572750	82572950	+	1	NA	NA	NA	18342	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.035000	0.552239	
mm_32061.1	chr4	97777554	97777754	+	1	NA	NA	NA	28	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.155000	0.751244	
mm_8730.1	chr1	160105628	160105828	-	1	NA	NA	NA	-27743	NR_038031	75255	Mm.414845	NR_038030	ENSMUSG00000026729	4930562F07Rik	-	RIKEN cDNA 4930562F07 gene	ncRNA	0.005000	0.567164	
mm_92283.1	chr10	71285174	71285374	-	1	NA	NA	NA	-12	NM_145420	216080	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	0.150000	0.756219	
mm_54438.1	chr6	34395853	34396053	-	1	NA	NA	NA	11706	NM_172398	67861	Mm.70371	NM_172398	ENSMUSG00000061758	Akr1b10	2310005E10Rik|Akr1b16	aldo-keto reductase family 1, member B10 (aldose reductase)	protein-coding	0.010000	0.407960	
mm_95203.1	chr11	43474211	43474411	+	1	NA	NA	NA	5	NM_026979	69183	Mm.390374	NM_026979	ENSMUSG00000046491	C1qtnf2	1810033K05Rik|CTRP2	C1q and tumor necrosis factor related protein 2	protein-coding	0.055000	0.631841	
mm_120165.1	chr14	60762470	60762670	+	1	NA	NA	NA	-5564	NM_183175	239126	Mm.319636	NM_183175	ENSMUSG00000071347	C1qtnf9	9130217G22Rik|CTRP9|Ciqtnf9	C1q and tumor necrosis factor related protein 9	protein-coding	0.015000	0.447761	
mm_3817.1	chr1	159232172	159232372	+	1	NA	NA	NA	-54	NM_011931	26374	Mm.328135	NM_011931	ENSMUSG00000040782	Rfwd2	AI316802|C80879|Cop1	ring finger and WD repeat domain 2	protein-coding	0.135000	0.736318	
mm_7575.1	chr1	124845937	124846137	-	1	NA	NA	NA	589690	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.020000	0.437811	
mm_78752.1	chr9	42296753	42296953	+	1	NA	NA	NA	-32553	NM_172769	235293	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	0.025000	0.497512	
mm_72578.1	chr8	84200741	84200941	+	1	NA	NA	NA	-7677	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.165000	0.815920	-7(AGGTTTTAAAGG,-,0.00),-6(GGTTTTAAAGGC,-,0.00),-5(GTTTTAAAGGCG,+,0.00)
mm_69837.1	chr7	141327433	141327633	-	1	NA	NA	NA	192	NM_016874	54006	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	deformed epidermal autoregulatory factor 1 (Drosophila)	protein-coding	0.150000	0.741294	
mm_158857.1	chrY	818508	818708	+	1	NA	NA	NA	-105	NM_011667	22202	Mm.422949	NM_011667	ENSMUSG00000069053	Uba1y	A1s9Y-1|Sby|Ube-2|Ube1ay|Ube1y|Ube1y-1|Ube1y1	ubiquitin-activating enzyme, Chr Y	protein-coding	0.045000	0.537313	
mm_42676.1	chr5	119680296	119680496	+	1	NA	NA	NA	9163	NM_011535	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.065000	0.621891	
mm_150594.1	chr19	40679508	40679708	+	1	NA	NA	NA	19838	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.005000	0.378109	
mm_98299.1	chr11	90030574	90030774	+	1	NA	NA	NA	326	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.040000	0.502488	-61(GTCCCTTAATGG,-,0.00),-59(CCCTTAATGGTC,+,0.00)
mm_66835.1	chr7	48878037	48878237	-	1	NA	NA	NA	2904	NM_001013368	108961	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.025000	0.487562	
mm_112274.1	chr12	114263042	114263242	-	1	NA	NA	NA	206324	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.010000	0.432836	
mm_155523.1	chrX	74257332	74257532	+	1	NA	NA	NA	2745	NM_007927	13726	Mm.18892	NM_007927	ENSMUSG00000001964	Emd	AW550900|Sta	emerin	protein-coding	0.005000	0.522388	
mm_124786.1	chr15	7974941	7975141	+	1	NA	NA	NA	124168	NM_001081402	545085	Mm.321312	NM_198413	ENSMUSG00000039828	Wdr70	4833422F06Rik	WD repeat domain 70	protein-coding	0.030000	0.497512	-13(TCCTTTATAAGA,-,0.00)
mm_128467.1	chr15	50821581	50821781	-	1	NA	NA	NA	67368	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.010000	0.407960	
mm_94004.1	chr10	127595481	127595681	-	1	NA	NA	NA	25567	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.025000	0.547264	
mm_98728.1	chr11	96351859	96352059	+	1	NA	NA	NA	327	NM_134032	103889	Mm.281153	NM_134032	ENSMUSG00000075588	Hoxb2	AI894218|Hox-2.8|Hoxbes2	homeobox B2	protein-coding	0.055000	0.587065	
mm_13104.1	chr2	91498225	91498425	+	1	NA	NA	NA	40794	NM_001145857	228357	Mm.275149	NM_172668	ENSMUSG00000027253	Lrp4	6430526J12Rik|D230026E03|Megf7|mdig	low density lipoprotein receptor-related protein 4	protein-coding	0.020000	0.552239	
mm_8306.1	chr1	144004049	144004249	-	1	NA	NA	NA	0	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.100000	0.671642	-33(CGCCTTAAAAGC,-,0.00),-32(GCCTTAAAAGCC,+,0.00),-31(CCTTAAAAGCCC,+,0.00)
mm_160443.1	chr8	95575102	95575302	-	1	NA	NA	NA	-5	NM_027640	70993	Mm.486561	NM_027640	ENSMUSG00000048400	Prss54	4931432M23Rik|Klkbl4	protease, serine 54	protein-coding	0.035000	0.601990	
mm_85317.1	chr9	101243634	101243834	-	1	NA	NA	NA	8098	NM_001161362	235542	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0.005000	0.343284	28(ACCTTTAAAAGT,-,0.00),29(CCTTTAAAAGTT,+,0.00)
mm_136847.1	chr17	12775147	12775347	+	1	NA	NA	NA	-5541	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.005000	0.417910	
mm_69530.1	chr7	135652231	135652431	-	1	NA	NA	NA	-17	NR_015548	67765	Mm.445272	NR_015548	ENSMUSG00000097471	5830432E09Rik	-	RIKEN cDNA 5830432E09 gene	ncRNA	0.025000	0.422886	-54(CTCTTTAAAAAA,-,0.00)
mm_111439.1	chr12	94652078	94652278	-	1	NA	NA	NA	724840	NR_106201	102466888		NR_106201	ENSMUSG00000098931	Mir8099-2	Gm27692|mmu-mir-8099-2	microRNA 8099-2	ncRNA	0.005000	0.363184	
mm_2915.1	chr1	132008773	132008973	+	1	NA	NA	NA	1268	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.010000	0.358209	
mm_71117.1	chr8	36094761	36094961	+	1	NA	NA	NA	33	NM_172911	244418	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.145000	0.756219	
mm_103775.1	chr11	82715348	82715548	-	1	NA	NA	NA	48873	NM_009839	12467	Mm.4126	NM_009839	ENSMUSG00000020698	Cct6b	CCT-zeta-2|CCTzeta-2|Cctz-2|TCP-1-zeta-2	chaperonin containing Tcp1, subunit 6b (zeta)	protein-coding	0.015000	0.442786	
mm_156831.1	chrX	164373187	164373387	+	1	NA	NA	NA	-235	NM_001308489	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.010000	0.442786	-34(AGCTTTTAAAAC,-,0.00),-33(GCTTTTAAAACT,+,0.00),-32(CTTTTAAAACTG,+,0.00)
mm_125171.1	chr15	31339183	31339383	+	1	NA	NA	NA	28476	NM_001164441	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.010000	0.472637	
mm_110259.1	chr12	31713722	31713922	-	1	NA	NA	NA	104	NM_175191	73010	Mm.441517	NM_175191	ENSMUSG00000044067	Gpr22	2900068K05Rik|AW061316	G protein-coupled receptor 22	protein-coding	0.020000	0.492537	
mm_26237.1	chr3	141465023	141465223	+	1	NA	NA	NA	-441	NM_009472	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.125000	0.711443	
mm_112533.1	chr13	9536719	9536919	+	1	NA	NA	NA	226991	NM_001347471	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.020000	0.582090	
mm_30066.1	chr3	137918983	137919183	-	1	NA	NA	NA	528	NM_019920	56692	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0.010000	0.477612	
mm_54269.1	chr6	28832958	28833158	-	1	NA	NA	NA	-1311	NM_138682	192198	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.085000	0.601990	
mm_147306.1	chr18	39661111	39661311	-	1	NA	NA	NA	-112286	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.015000	0.447761	39(GAGTATATATGC,-,0.00)
mm_164360.1	chr16	22892723	22892923	+	1	NA	NA	NA	808	NM_001276449	11625	Mm.197554	NM_013465	ENSMUSG00000022868	Ahsg	-	alpha-2-HS-glycoprotein	protein-coding	0.005000	0.388060	
mm_22265.1	chr2	178407491	178407691	-	1	NA	NA	NA	67	NM_177191	320558	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding	0.060000	0.636816	
mm_57246.1	chr6	123283222	123283422	-	1	NA	NA	NA	6549	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.378109	-7(CTTTTTAGACTG,+,0.00)
mm_138566.1	chr17	35358879	35359079	+	1	NA	NA	NA	16646	NM_010392	15013	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|ENSMUSG00000079507|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	0.015000	0.592040	
mm_28290.1	chr3	89089882	89090082	-	1	NA	NA	NA	49	NM_001083808	72296	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.060000	0.611940	-12(CCTTCTTAAAGG,-,0.00),-11(CTTCTTAAAGGC,+,0.00)
mm_70023.1	chr7	142575870	142576070	-	1	NA	NA	NA	1177	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.010000	0.507463	
mm_43043.1	chr5	124070555	124070755	+	1	NA	NA	NA	25143	NM_019875	56325	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.025000	0.512438	
mm_65762.1	chr7	28646676	28646876	-	1	NA	NA	NA	-15761	NM_175319	101744	Mm.26022	NM_175319	ENSMUSG00000037469	Acp7	AU017076|C330005M16Rik|Papl	acid phosphatase 7, tartrate resistant	protein-coding	0.005000	0.487562	
mm_116478.1	chr13	43560043	43560243	-	1	NA	NA	NA	48	NM_001081059	76137	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0.180000	0.781095	
mm_29167.1	chr3	106485815	106486015	-	1	NA	NA	NA	-2	NR_033207	69206	Mm.14816	NM_001033146	ENSMUSG00000091575	2010016I18Rik	-	RIKEN cDNA 2010016I18 gene	ncRNA	0.010000	0.532338	
mm_50831.1	chr6	54718903	54719103	+	1	NA	NA	NA	37379	NM_001289740	68235	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.030000	0.497512	
mm_632.1	chr1	40325498	40325698	+	1	NA	NA	NA	971	NM_133193	107527	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0.035000	0.477612	87(GCATATTTAAGC,-,0.00)
mm_108903.1	chr12	100199496	100199696	+	1	NA	NA	NA	161	NM_009790	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.110000	0.656716	
mm_145900.1	chr18	65634722	65634922	+	1	NA	NA	NA	-15207	NR_105742	100526497		NR_105742	ENSMUSG00000077113	Mir466p	mmu-mir-466p	microRNA 466p	ncRNA	0.005000	0.393035	
mm_101599.1	chr11	34744572	34744772	-	1	NA	NA	NA	39233	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.000000	0.263682	
mm_17785.1	chr2	32982057	32982257	-	1	NA	NA	NA	-101	NM_019488	56017	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0.045000	0.597015	
mm_108440.1	chr12	82339686	82339886	+	1	NA	NA	NA	28437	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.025000	0.542289	
mm_6948.1	chr1	85752359	85752559	-	1	NA	NA	NA	511	NR_106172	102466882		NR_106172	ENSMUSG00000098634	Mir8096	Gm27479|mmu-mir-8096	microRNA 8096	ncRNA	0.015000	0.512438	
mm_156422.1	chrX	140923080	140923280	+	1	NA	NA	NA	-9	NM_026103	78789	Mm.244932	NM_026103	ENSMUSG00000031430	Vsig1	1700062D20Rik|4930405J24Rik	V-set and immunoglobulin domain containing 1	protein-coding	0.000000	0.482587	
mm_126535.1	chr15	82022610	82022810	+	1	NA	NA	NA	6341	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.005000	0.557214	
mm_12838.1	chr2	81669595	81669795	+	1	NA	NA	NA	-383963	NM_175513	241514	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding	0.000000	0.318408	
mm_80012.1	chr9	67852396	67852596	+	1	NA	NA	NA	12100	NM_177184	320528	Mm.241454	NM_177184	ENSMUSG00000035284	Vps13c	AI552542|AV026040|C230055H22Rik|W51662|chorein	vacuolar protein sorting 13C	protein-coding	0.005000	0.328358	
mm_66439.1	chr7	44816497	44816697	-	1	NA	NA	NA	61	NR_033136	107503	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	0.140000	0.746269	
mm_32962.1	chr4	119814415	119814615	+	1	NA	NA	NA	-163	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.040000	0.487562	
mm_72398.1	chr8	81768403	81768603	+	1	NA	NA	NA	425941	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.005000	0.467662	
mm_13014.1	chr2	90964974	90965174	+	1	NA	NA	NA	24677	NM_017368	13046	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	0.020000	0.522388	
mm_157361.1	chrX	37104426	37104626	-	1	NA	NA	NA	5796	NM_026573	68134	Mm.271160	NM_026573	ENSMUSG00000036572	Upf3b	5730594O13Rik|AI317193|AW541158|RENT3B|UPF3X	UPF3 regulator of nonsense transcripts homolog B (yeast)	protein-coding	0.010000	0.313433	
mm_74148.1	chr8	123310563	123310763	+	1	NA	NA	NA	7913	NM_016925	14087	Mm.6536	NM_016925	ENSMUSG00000032815	Fanca	AW208693|FACA	Fanconi anemia, complementation group A	protein-coding	0.015000	0.407960	
mm_111729.1	chr12	103773472	103773672	-	1	NA	NA	NA	61	NM_009246	20703	Mm.439695	NM_009246	ENSMUSG00000071177	Serpina1d	AI118301|Dom4|PI4|Spi1-4	serine (or cysteine) peptidase inhibitor, clade A, member 1D	protein-coding	0.015000	0.502488	
mm_155899.1	chrX	101653521	101653721	+	1	NA	NA	NA	13403	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.000000	0.273632	
mm_157666.1	chrX	58039803	58040003	-	1	NA	NA	NA	9275	NM_009575	22773	Mm.255890	NM_009575	ENSMUSG00000067860	Zic3	Bn|Ka	zinc finger protein of the cerebellum 3	protein-coding	0.005000	0.522388	
mm_100575.1	chr11	120766158	120766358	+	1	NA	NA	NA	17946	NM_009053	19719	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.010000	0.547264	54(CCTTTTATAGAG,+,0.00)
mm_35778.1	chr4	46404055	46404255	-	1	NA	NA	NA	28	NM_053149	93966	Mm.25793	NM_053149	ENSMUSG00000028332	Hemgn	4921524M03Rik|AI317176|EDAG|Hgn|mNDR	hemogen	protein-coding	0.010000	0.442786	
mm_50853.1	chr6	54896951	54897151	+	1	NA	NA	NA	74610	NM_001171007	107607	Mm.28498	NM_172729	ENSMUSG00000038058	Nod1	C230079P11|Card4|F830007N14Rik|Nlrc1	nucleotide-binding oligomerization domain containing 1	protein-coding	0.000000	0.412935	
mm_88475.1	chr10	77606571	77606771	+	1	NA	NA	NA	73	NM_001301671	20610	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.115000	0.676617	
mm_73392.1	chr8	105708186	105708386	+	1	NA	NA	NA	-17	NM_027655	71046	Mm.280888	NM_027655	ENSMUSG00000013158	4933405L10Rik	-	RIKEN cDNA 4933405L10 gene	protein-coding	0.020000	0.552239	
mm_155058.1	chrX	42424285	42424485	+	1	NA	NA	NA	-78180	NM_011364	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	0.000000	0.407960	
mm_160941.1	chr11	94996056	94996256	+	1	NA	NA	NA	4944	NM_172261	217124	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.010000	0.562189	
mm_60649.1	chr7	44857064	44857264	+	1	NA	NA	NA	18	NM_001290766	59047	Mm.238254	NM_021549	ENSMUSG00000002963	Pnkp	1810009G08Rik|PNK	polynucleotide kinase 3'- phosphatase	protein-coding	0.050000	0.517413	
mm_43366.1	chr5	135404815	135405015	+	1	NA	NA	NA	-10369	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.050000	0.517413	
mm_42500.1	chr5	115489433	115489633	+	1	NA	NA	NA	-5049	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.065000	0.457711	
mm_140260.1	chr17	84613069	84613269	+	1	NA	NA	NA	-13330	NM_172256	213575	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0.000000	0.383085	
mm_142098.1	chr17	35835063	35835263	-	1	NA	NA	NA	3138	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.050000	0.557214	
mm_157595.1	chrX	53239992	53240192	-	1	NA	NA	NA	29713	NM_030167	78755	Mm.28559	NM_030167	ENSMUSG00000036022	Fam122b	4632404H22Rik|AI256344|SPACIA2	family with sequence similarity 122, member B	protein-coding	0.005000	0.422886	
mm_75126.1	chr8	34890594	34890794	-	1	NA	NA	NA	74996	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.025000	0.477612	
mm_150035.1	chr19	29376981	29377181	+	1	NA	NA	NA	9643	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.010000	0.393035	
mm_53701.1	chr6	142814265	142814465	+	1	NA	NA	NA	134	NR_045707	665037	Mm.401493	NR_045707	ENSMUSG00000072683	Gm7457	EG665037|ENSMUSG00000072683	predicted gene 7457	ncRNA	0.015000	0.462687	
mm_126111.1	chr15	78253188	78253388	+	1	NA	NA	NA	8477	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.025000	0.562189	
mm_79599.1	chr9	58488048	58488248	+	1	NA	NA	NA	-455	NM_176921	319477	Mm.153674	NM_176921	ENSMUSG00000066607	6030419C18Rik	-	RIKEN cDNA 6030419C18 gene	protein-coding	0.155000	0.800995	-90(CGCTTTAAAAGC,-,0.00),-89(GCTTTAAAAGCT,+,0.00)
mm_15966.1	chr2	166059220	166059420	+	1	NA	NA	NA	66683	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.020000	0.557214	
mm_104962.1	chr11	100143624	100143824	-	1	NA	NA	NA	-25	NM_001313963	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.000000	0.437811	
mm_140941.1	chr17	24455205	24455405	-	1	NA	NA	NA	87	NM_001301784	13560	Mm.163132	NM_007893	ENSMUSG00000024137	E4f1	p120E4F|phi-AP3	E4F transcription factor 1	protein-coding	0.130000	0.661692	
mm_110430.1	chr12	46819096	46819296	-	1	NA	NA	NA	-421	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.200000	0.845771	
mm_88681.1	chr10	80053875	80054075	+	1	NA	NA	NA	-44	NM_001037741	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.130000	0.736318	
mm_81686.1	chr9	111118202	111118402	+	1	NA	NA	NA	191	NM_001164838	71268	Mm.302287	NM_027742	ENSMUSG00000032497	Lrrfip2	5133400F20Rik|AI850587	leucine rich repeat (in FLII) interacting protein 2	protein-coding	0.140000	0.766169	
mm_26637.1	chr3	153260720	153260920	+	1	NA	NA	NA	37829	NR_126464	75489	Mm.443252	NR_126464	ENSMUSG00000105023	1700012D16Rik	-	RIKEN cDNA 1700012D16 gene	ncRNA	0.010000	0.477612	
mm_14949.1	chr2	151973319	151973519	+	1	NA	NA	NA	-25	NM_001289151	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.050000	0.592040	
mm_59924.1	chr7	30422366	30422566	+	1	NA	NA	NA	-838	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.055000	0.572139	
mm_142835.1	chr17	51786934	51787134	-	1	NA	NA	NA	25020	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.000000	0.263682	
mm_34648.1	chr4	150846993	150847193	+	1	NA	NA	NA	7856	NR_040649	73348	Mm.396218	NR_040649	ENSMUSG00000078492	1700045H11Rik	-	RIKEN cDNA 1700045H11 gene	ncRNA	0.035000	0.482587	
mm_113456.1	chr13	35958756	35958956	+	1	NA	NA	NA	-9050	NM_029628	76487	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	0.000000	0.512438	
mm_69441.1	chr7	132932055	132932255	-	1	NA	NA	NA	-17467	NM_207302	360216	Mm.389984	NM_207302	ENSMUSG00000030967	Zranb1	9330160G10Rik|D7Wsu87e|Gm1956|Trabid	zinc finger, RAN-binding domain containing 1	protein-coding	0.035000	0.447761	
mm_114377.1	chr13	63151441	63151641	+	1	NA	NA	NA	-88488	NR_110520	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.015000	0.572139	
mm_28372.1	chr3	89913058	89913258	-	1	NA	NA	NA	38	NM_001310676	16194	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.125000	0.726368	
mm_45576.1	chr5	73632328	73632528	-	1	NA	NA	NA	-7	NM_153568	231296	Mm.168948	NM_153568	ENSMUSG00000067206	Lrrc66	-	leucine rich repeat containing 66	protein-coding	0.020000	0.587065	
mm_67858.1	chr7	98975886	98976086	-	1	NA	NA	NA	137141	NM_001285795	22411	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.020000	0.442786	
mm_126231.1	chr15	78947842	78948042	+	1	NA	NA	NA	218	NM_001039155	110253	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.055000	0.577114	
mm_133999.1	chr16	4769633	4769833	-	1	NA	NA	NA	20202	NM_025670	66626	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0.010000	0.587065	
mm_89495.1	chr10	93833751	93833951	+	1	NA	NA	NA	2296	NM_001206851	327799	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.110000	0.726368	
mm_80511.1	chr9	79755314	79755514	+	1	NA	NA	NA	4439	NM_009945	12866	Mm.152627	NM_009945	ENSMUSG00000032330	Cox7a2	COX7AL|Cox7a3|CoxVIIa-L	cytochrome c oxidase subunit VIIa 2	protein-coding	0.010000	0.353234	
mm_12888.1	chr2	84773219	84773419	+	1	NA	NA	NA	2110	NM_009776	12258	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.010000	0.557214	
mm_32873.1	chr4	118527036	118527236	+	1	NA	NA	NA	-139	NM_025572	66451	Mm.34431	NM_025572	ENSMUSG00000028536	2610528J11Rik	TEMP	RIKEN cDNA 2610528J11 gene	protein-coding	0.025000	0.606965	
mm_100415.1	chr11	119427978	119428178	+	1	NA	NA	NA	37606	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.015000	0.527363	
mm_128973.1	chr15	74832295	74832495	-	1	NA	NA	NA	9248	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.010000	0.348259	
mm_32056.1	chr4	97777299	97777499	+	1	NA	NA	NA	-227	NM_001122953	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.135000	0.731343	
mm_147899.1	chr18	65328589	65328789	-	1	NA	NA	NA	65199	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.010000	0.512438	
mm_109209.1	chr12	108677537	108677737	+	1	NA	NA	NA	19017	NR_029771	723909		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.010000	0.472637	
mm_121185.1	chr14	103049278	103049478	+	1	NA	NA	NA	2366	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.015000	0.442786	
mm_68922.1	chr7	126470104	126470304	-	1	NA	NA	NA	2890	NR_110346	20399	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	0.015000	0.507463	
mm_65028.1	chr7	18484387	18484587	-	1	NA	NA	NA	-338	NM_001029893	574429	Mm.296754	NM_001029893	ENSMUSG00000070799	Psg26	EG574429|cea14	pregnancy-specific glycoprotein 26	protein-coding	0.005000	0.472637	
mm_151366.1	chr19	55925865	55926065	+	1	NA	NA	NA	30644	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.030000	0.567164	
mm_126219.1	chr15	78913849	78914049	+	1	NA	NA	NA	30	NM_020271	57028	Mm.263169	NM_020271	ENSMUSG00000022436	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	0.140000	0.721393	
mm_61040.1	chr7	49759032	49759232	+	1	NA	NA	NA	26	NM_001146049	53415	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0.120000	0.756219	
mm_12858.1	chr2	83761640	83761840	+	1	NA	NA	NA	37343	NM_008402	16410	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.010000	0.457711	
mm_72294.1	chr8	75213387	75213587	+	1	NA	NA	NA	-457	NM_029182	75141	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.130000	0.721393	
mm_164064.1	chr14	118051993	118052193	-	1	NA	NA	NA	153	NM_010024	13190	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	0.020000	0.412935	
mm_108360.1	chr12	80790461	80790661	+	1	NA	NA	NA	29	NM_001242419	217684	Mm.341776	NM_178682	ENSMUSG00000021133	Susd6	4933426M11Rik|mKIAA0247	sushi domain containing 6	protein-coding	0.140000	0.751244	
mm_162020.1	chr19	45742818	45743018	-	1	NA	NA	NA	-34	NM_001166362	14179	Mm.4012	NM_010205	ENSMUSG00000025219	Fgf8	Aigf|Fgf-8	fibroblast growth factor 8	protein-coding	0.120000	0.791045	
mm_157206.1	chrX	12732870	12733070	-	1	NA	NA	NA	29003	NM_012005	26896	Mm.17616	NM_012005	ENSMUSG00000064127	Med14	9930001L01Rik|AU041628|Crsp2|ENSMUSG00000073278|Gm641|ORF1|Trap170	mediator complex subunit 14	protein-coding	0.000000	0.402985	
mm_96355.1	chr11	67023451	67023651	+	1	NA	NA	NA	-1603	NM_001291042	338369	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	0.010000	0.542289	-35(CACTATAAAAGG,-,0.00)
mm_151040.1	chr19	47023477	47023677	+	1	NA	NA	NA	-8388	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.030000	0.457711	
mm_169554.1	chr15	103243647	103243847	+	1	NA	NA	NA	3293	NR_002883	434858	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.010000	0.437811	
mm_116648.1	chr13	49183753	49183953	-	1	NA	NA	NA	-3694	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.015000	0.527363	89(AAGTTTTAAAGG,-,0.00)
mm_55451.1	chr6	67292160	67292360	-	1	NA	NA	NA	25281	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.025000	0.457711	
mm_156175.1	chrX	130330220	130330420	+	1	NA	NA	NA	580578	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.005000	0.383085	
mm_25448.1	chr3	108312818	108313018	+	1	NA	NA	NA	28854	NM_019972	20661	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0.010000	0.562189	-25(CACTATAAAAGG,-,0.00)
mm_30997.1	chr4	40143306	40143506	+	1	NA	NA	NA	141	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.095000	0.731343	
mm_70888.1	chr8	25532031	25532231	+	1	NA	NA	NA	13372	NM_001079908	14182	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.035000	0.517413	
mm_89307.1	chr10	87916267	87916467	+	1	NA	NA	NA	-50304	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.010000	0.338308	
mm_126573.1	chr15	82256098	82256298	+	1	NA	NA	NA	175	NR_037698	76505	Mm.23023	NR_037697	ENSMUSG00000068099	1500009C09Rik	-	RIKEN cDNA 1500009C09 gene	ncRNA	0.020000	0.611940	
mm_168781.1	chr12	18070443	18070643	-	1	NA	NA	NA	379729	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.025000	0.497512	-20(GCCTATATAAGC,-,0.00)
mm_81008.1	chr9	103721185	103721385	+	1	NA	NA	NA	40552	NM_178638	81907	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding	0.025000	0.597015	
mm_137968.1	chr17	33524101	33524301	+	1	NA	NA	NA	116	NM_001329147	224697	Mm.29304	NM_172619	ENSMUSG00000024299	Adamts10	9430006O18|AW045948|Adam-ts10|Adamts-10|Znmp	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 10	protein-coding	0.085000	0.661692	
mm_28914.1	chr3	98853037	98853237	-	1	NA	NA	NA	6657	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.000000	0.417910	13(GCCTTAAGACCC,+,0.00)
mm_132586.1	chr16	38362143	38362343	+	1	NA	NA	NA	53	NM_022318	64082	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.040000	0.512438	
mm_82918.1	chr9	35070256	35070456	-	1	NA	NA	NA	-46372	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.010000	0.348259	30(GTTCATAAAAGC,-,0.00)
mm_96597.1	chr11	69090846	69091046	+	1	NA	NA	NA	2418	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.010000	0.467662	
mm_46845.1	chr5	113507067	113507267	-	1	NA	NA	NA	-43253	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.005000	0.527363	
mm_64154.1	chr7	141329210	141329410	+	1	NA	NA	NA	1180	NM_027797	71448	Mm.248960	NM_027797	ENSMUSG00000025505	Tmem80	5530601I19Rik	transmembrane protein 80	protein-coding	0.010000	0.452736	
mm_164513.1	chr16	95585457	95585657	-	1	NA	NA	NA	1036	NM_001302152	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	0.095000	0.716418	
mm_43172.1	chr5	127564197	127564397	+	1	NA	NA	NA	53095	NM_133895	100561	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.010000	0.402985	
mm_7905.1	chr1	133661266	133661466	-	1	NA	NA	NA	33	NM_001276767	70579	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	0.080000	0.597015	-46(CAGCCTTAAAGG,-,0.00),-45(AGCCTTAAAGGC,-,0.00),-44(GCCTTAAAGGCG,+,0.00)
mm_130551.1	chr15	98985733	98985933	-	1	NA	NA	NA	-132	NR_045991	75951	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.045000	0.537313	
mm_13203.1	chr2	93461270	93461470	+	1	NA	NA	NA	481	NM_001271461	12521	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.000000	0.532338	
mm_99366.1	chr11	101732893	101733093	+	1	NA	NA	NA	37	NM_144831	217207	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	0.085000	0.601990	
mm_35572.1	chr4	41680985	41681185	-	1	NA	NA	NA	14368	NM_001136056	12804	Mm.425178	NM_016673	ENSMUSG00000028444	Cntfr	Cntfralpha	ciliary neurotrophic factor receptor	protein-coding	0.005000	0.417910	
mm_62009.1	chr7	91262607	91262807	+	1	NA	NA	NA	171921	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.050000	0.567164	
mm_2118.1	chr1	87878110	87878310	+	1	NA	NA	NA	-23911	NR_136921	100503175	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.005000	0.378109	-97(TTCTATAAATAG,-,0.00)
mm_169933.1	chr1	66033156	66033356	+	1	NA	NA	NA	106734	NM_027010	12969	Mm.275362	NM_027010	ENSMUSG00000025945	Crygf	3110001K11Rik|Cryg-2|DGcry-2|Len-2	crystallin, gamma F	protein-coding	0.010000	0.422886	
mm_110518.1	chr12	54862407	54862607	-	1	NA	NA	NA	370	NM_007688	12632	Mm.276826	NM_007688	ENSMUSG00000062929	Cfl2	-	cofilin 2, muscle	protein-coding	0.105000	0.676617	
mm_37438.1	chr4	122961351	122961551	-	1	NA	NA	NA	-263	NM_029662	76574	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.020000	0.542289	-35(GGATTTTAAAAG,-,0.00),-34(GATTTTAAAAGG,-,0.00)
mm_130262.1	chr15	96642834	96643034	-	1	NA	NA	NA	-21	NM_001166458	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.080000	0.726368	
mm_98384.1	chr11	94209740	94209940	+	1	NA	NA	NA	-1614	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.030000	0.487562	
mm_83943.1	chr9	56851882	56852082	-	1	NA	NA	NA	-19	NM_198673	382075	Mm.335177	NM_198673	ENSMUSG00000045620	Odf3l1	BC049697|Gm1116	outer dense fiber of sperm tails 3-like 1	protein-coding	0.040000	0.597015	
mm_151666.1	chr19	4163253	4163453	-	1	NA	NA	NA	-108	NM_021485	58988	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	70kDa|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.080000	0.611940	
mm_100035.1	chr11	114982919	114983119	+	1	NA	NA	NA	6867	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.000000	0.417910	
mm_2763.1	chr1	130478395	130478595	+	1	NA	NA	NA	-15751	NM_010016	13136	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0.010000	0.353234	
mm_90596.1	chr10	128303237	128303437	+	1	NA	NA	NA	2	NM_001252326	103135	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	0.060000	0.577114	
mm_3877.1	chr1	161034498	161034698	+	1	NA	NA	NA	-339	NM_173424	240869	Mm.296127	NM_173424	ENSMUSG00000043467	Zbtb37	D430004I08Rik	zinc finger and BTB domain containing 37	protein-coding	0.110000	0.766169	
mm_172496.1	chr7	63605989	63606189	+	1	NA	NA	NA	161317	NM_130880	170711	Mm.156872	NM_130880	ENSMUSG00000033510	Otud7a	AJ430384|Otud7	OTU domain containing 7A	protein-coding	0.010000	0.462687	
mm_111986.1	chr12	110485543	110485743	-	1	NA	NA	NA	-96	NM_001081457	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.025000	0.442786	
mm_106206.1	chr11	116850821	116851021	-	1	NA	NA	NA	2173	NM_011358	20382	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0.015000	0.407960	53(GGCTATTAAAAA,-,0.00)
mm_114357.1	chr13	60955067	60955267	+	1	NA	NA	NA	-13232	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding	0.005000	0.487562	-33(GCTTTAAGACCC,+,0.00)
mm_63487.1	chr7	127748072	127748272	+	1	NA	NA	NA	1397	NM_172748	233902	Mm.259353	NM_172748	ENSMUSG00000030811	Fbxl19	6030430O11|BC059812|Fbl19	F-box and leucine-rich repeat protein 19	protein-coding	0.025000	0.601990	
mm_144424.1	chr18	21001182	21001382	+	1	NA	NA	NA	-18	NM_019706	56515	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	0.105000	0.696517	
mm_126815.1	chr15	88600206	88600406	+	1	NA	NA	NA	4	NM_027306	70073	Mm.45306	NM_027306	ENSMUSG00000054117	Zdhhc25	1700030J15Rik	zinc finger, DHHC domain containing 25	protein-coding	0.015000	0.562189	
mm_121692.1	chr14	13961198	13961398	-	1	NA	NA	NA	15	NM_001285780	66231	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.185000	0.766169	
mm_129067.1	chr15	75663987	75664187	-	1	NA	NA	NA	14703	NM_028404	72960	Mm.182401	NM_028404	ENSMUSG00000000934	Top1mt	2900052H09Rik	DNA topoisomerase 1, mitochondrial	protein-coding	0.035000	0.527363	
mm_162466.1	chr1	131135315	131135515	+	1	NA	NA	NA	2819	NM_145508	226419	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.020000	0.532338	
mm_154513.1	chrM	12310	12510	-	1	NA	NA	NA	NA	NA									0.010000	0.407960	24(GCCTATAAGTGG,-,0.00)
mm_101483.1	chr11	31359236	31359436	-	1	NA	NA	NA	10725	NM_011491	20856	Mm.32506	NM_011491	ENSMUSG00000020303	Stc2	AW125853|Stc2l|mustc2	stanniocalcin 2	protein-coding	0.010000	0.512438	-7(TTTTTTAAAGAG,+,0.00)
mm_137644.1	chr17	28530757	28530957	+	1	NA	NA	NA	-4	NM_026290	67645	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.020000	0.562189	
mm_85668.1	chr9	107675976	107676176	-	1	NA	NA	NA	3516	NM_008140	14685	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.100000	0.611940	
mm_168976.1	chr12	88274400	88274600	-	1	NA	NA	NA	-3	NM_001013824	435337	Mm.441366	NM_001013824	ENSMUSG00000079029	Gm5662	EG435337	predicted gene 5662	protein-coding	0.010000	0.472637	
mm_146668.1	chr18	12220019	12220219	-	1	NA	NA	NA	16267	NM_008720	18145	Mm.3484	NM_008720	ENSMUSG00000024413	Npc1	A430089E03Rik|C85354|D18Ertd139e|D18Ertd723e|lcsd|nmf164|spm	Niemann-Pick type C1	protein-coding	0.040000	0.522388	
mm_60350.1	chr7	44359010	44359210	+	1	NA	NA	NA	15920	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.025000	0.552239	
mm_16663.1	chr2	6721518	6721718	-	1	NA	NA	NA	44	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.025000	0.522388	
mm_66695.1	chr7	45919253	45919453	-	1	NA	NA	NA	1496	NM_001146346	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.040000	0.611940	
mm_144415.1	chr18	20962357	20962557	+	1	NA	NA	NA	17832	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.020000	0.432836	46(GACTTTAAAAAA,-,0.00)
mm_166053.1	chr4	132345568	132345768	-	1	NA	NA	NA	82	NM_001197082	100088	Mm.255045	NM_133878	ENSMUSG00000028896	Rcc1	4931417M11Rik|AI326872|Chc1	regulator of chromosome condensation 1	protein-coding	0.130000	0.721393	
mm_112805.1	chr13	20605304	20605504	+	1	NA	NA	NA	132414	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.015000	0.542289	
mm_89605.1	chr10	95993327	95993527	+	1	NA	NA	NA	52764	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.005000	0.298507	
mm_125868.1	chr15	75498648	75498848	+	1	NA	NA	NA	49296	NM_001347049	102637705		NM_001347049	ENSMUSG00000093626	Ly6l	Gm20654	lymphocyte antigen 6 complex, locus L	protein-coding	0.005000	0.597015	
mm_91842.1	chr10	57532352	57532552	-	1	NA	NA	NA	77	NM_019760	56442	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	0.100000	0.631841	-12(GCCCAGAAAAAG,-,0.00)
mm_139051.1	chr17	46297758	46297958	+	1	NA	NA	NA	-70	NM_001286013	106565	Mm.23633	NM_134120	ENSMUSG00000047428	Dlk2	AI413481|DLK-2|Egfl9	delta-like 2 homolog (Drosophila)	protein-coding	0.160000	0.820896	
mm_47049.1	chr5	116083143	116083343	-	1	NA	NA	NA	3	NM_001101546	545798	Mm.483995	NM_001101546	ENSMUSG00000079278	Tmem233	DSPB2|Gm13843|OTTMUSG00000014722	transmembrane protein 233	protein-coding	0.045000	0.611940	
mm_50763.1	chr6	53576218	53576418	+	1	NA	NA	NA	2944	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.020000	0.398010	
mm_9860.1	chr1	184811195	184811395	-	1	NA	NA	NA	5	NM_001290273	66112	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	0.035000	0.656716	
mm_2473.1	chr1	105701306	105701506	+	1	NA	NA	NA	37545	NM_173187	227446	Mm.337339	NM_029349	ENSMUSG00000026319	2310035C23Rik	6430401N10|Kiaa1468|mKIAA1468	RIKEN cDNA 2310035C23 gene	protein-coding	0.010000	0.278607	
mm_110711.1	chr12	69371875	69372075	-	1	NA	NA	NA	-175	NM_007481	11845	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.150000	0.741294	
mm_45087.1	chr5	44099106	44099306	-	1	NA	NA	NA	2530	NM_008935	19126	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.015000	0.522388	
mm_3967.1	chr1	164151777	164151977	+	1	NA	NA	NA	42	NM_007976	14067	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	0.030000	0.611940	
mm_83315.1	chr9	44134396	44134596	-	1	NA	NA	NA	-162	NM_023061	84004	Mm.275003	NM_023061	ENSMUSG00000032135	Mcam	1-gicerin|AV025631|CD146|CD149|Muc18|s-endo|s-gicerin	melanoma cell adhesion molecule	protein-coding	0.095000	0.716418	
mm_78708.1	chr9	41376803	41377003	+	1	NA	NA	NA	377	NR_131928	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.010000	0.398010	
mm_109959.1	chr12	12492157	12492357	-	1	NA	NA	NA	-99782	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	0.010000	0.383085	
mm_71604.1	chr8	55940363	55940563	+	1	NA	NA	NA	-362	NM_080438	110304	Mm.307061	NM_080438	ENSMUSG00000038257	Glra3	-	glycine receptor, alpha 3 subunit	protein-coding	0.045000	0.572139	
mm_70929.1	chr8	25813273	25813473	+	1	NA	NA	NA	4899	NM_011485	20845	Mm.293314	NM_011485	ENSMUSG00000031574	Star	AV363654|D8Ertd419e|stARD1	steroidogenic acute regulatory protein	protein-coding	0.005000	0.447761	
mm_115775.1	chr13	19311189	19311389	-	1	NA	NA	NA	84524	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.393035	
mm_47029.1	chr5	115652860	115653060	-	1	NA	NA	NA	7387	NR_105997	102465623		NR_105997	ENSMUSG00000099254	Mir7030	Gm27267|mmu-mir-7030	microRNA 7030	ncRNA	0.040000	0.616915	
mm_162856.1	chr10	90113230	90113430	+	1	NA	NA	NA	239821	NM_001128086	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.000000	0.348259	
mm_30825.1	chr4	21873942	21874142	+	1	NA	NA	NA	-5633	NM_172687	230027	Mm.5662	NM_172687	ENSMUSG00000028247	Coq3	4732433J24|C77934	coenzyme Q3 methyltransferase	protein-coding	0.050000	0.537313	
mm_72.1	chr1	6671816	6672016	+	1	NA	NA	NA	-58135	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.278607	13(CTTTTTATATGA,+,0.00)
mm_144826.1	chr18	36348659	36348859	+	1	NA	NA	NA	135	NM_001081365	66060	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.100000	0.681592	
mm_35774.1	chr4	46403932	46404132	-	1	NA	NA	NA	151	NM_053149	93966	Mm.25793	NM_053149	ENSMUSG00000028332	Hemgn	4921524M03Rik|AI317176|EDAG|Hgn|mNDR	hemogen	protein-coding	0.015000	0.452736	-15(GCTTTTAGGCTG,+,0.00)
mm_9483.1	chr1	173490837	173491037	-	1	NA	NA	NA	45020	NM_001024721	545384	Mm.371698	NM_001024721	ENSMUSG00000070501	Ifi214	Pyhin-B|p214	interferon activated gene 214	protein-coding	0.010000	0.487562	
mm_56338.1	chr6	92773236	92773436	-	1	NA	NA	NA	-67152	NM_001081146	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.000000	0.383085	-27(CTTTTTAGACCT,+,0.00)
mm_69540.1	chr7	135695505	135695705	-	1	NA	NA	NA	20774	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.005000	0.432836	
mm_123658.1	chr14	69243892	69244092	-	1	NA	NA	NA	41111	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.020000	0.447761	
mm_127116.1	chr15	97975517	97975717	+	1	NA	NA	NA	11388	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.015000	0.363184	-85(CCTTATAGAACC,+,0.00)
mm_31189.1	chr4	43562583	43562783	+	1	NA	NA	NA	49	NM_013497	12913	Mm.12407	NM_013497	ENSMUSG00000028466	Creb3	AU044960|AW538053|C80076|LZIP|LZIP-1|LZIP-2|Luman	cAMP responsive element binding protein 3	protein-coding	0.055000	0.577114	
mm_85772.1	chr9	109051581	109051781	-	1	NA	NA	NA	-3185	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.010000	0.547264	
mm_162170.1	chrX	101274770	101274970	+	1	NA	NA	NA	779	NM_021521	59024	Mm.20873	NM_021521	ENSMUSG00000079487	Med12	230kDa|Mopa|OPA-1|Tnrc11|Trap230	mediator complex subunit 12	protein-coding	0.010000	0.487562	
mm_148880.1	chr19	6531088	6531288	+	1	NA	NA	NA	11882	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.090000	0.631841	
mm_580.1	chr1	39362895	39363095	+	1	NA	NA	NA	-4856	NM_053257	114641	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.015000	0.343284	
mm_60727.1	chr7	45406339	45406539	+	1	NA	NA	NA	479	NM_010596	16495	Mm.12955	NM_010596	ENSMUSG00000038201	Kcna7	Kv1.7	potassium voltage-gated channel, shaker-related subfamily, member 7	protein-coding	0.145000	0.731343	
mm_4406.1	chr1	172475331	172475531	+	1	NA	NA	NA	71	NM_029612	98365	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	0.000000	0.527363	
mm_108952.1	chr12	102357041	102357241	+	1	NA	NA	NA	73500	NM_001161365	217835	Mm.24145	NM_177620	ENSMUSG00000044456	Rin3	6430500K07|C86933	Ras and Rab interactor 3	protein-coding	0.005000	0.507463	
mm_51423.1	chr6	78426864	78427064	+	1	NA	NA	NA	981	NM_009042	19692	Mm.142731	NM_009042	ENSMUSG00000059654	Reg1	-	regenerating islet-derived 1	protein-coding	0.005000	0.512438	
mm_37345.1	chr4	119733481	119733681	-	1	NA	NA	NA	-74636	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.075000	0.611940	
mm_74789.1	chr8	22185688	22185888	-	1	NA	NA	NA	31	NM_001004140	80986	Mm.22448	NM_001004140	ENSMUSG00000037725	Ckap2	AI461656|AW228814|LB1	cytoskeleton associated protein 2	protein-coding	0.105000	0.701493	
mm_149300.1	chr19	10699287	10699487	+	1	NA	NA	NA	10572	NM_181403	107305	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.010000	0.547264	
mm_28058.1	chr3	84220775	84220975	-	1	NA	NA	NA	2	NM_030706	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.025000	0.517413	
mm_40911.1	chr5	75601476	75601676	+	1	NA	NA	NA	26585	NM_021099	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	KIT proto-oncogene receptor tyrosine kinase	protein-coding	0.005000	0.407960	
mm_100320.1	chr11	118004546	118004746	+	1	NA	NA	NA	2376	NR_105898	102466768		NR_105898	ENSMUSG00000098958	Mir6933	Gm27856|mmu-mir-6933	microRNA 6933	ncRNA	0.025000	0.482587	
mm_15280.1	chr2	155276346	155276546	+	1	NA	NA	NA	82	NR_046364	66734	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0.125000	0.716418	-30(TCCCCTTTAAGG,-,0.00),-28(CCCTTTAAGGAA,+,0.00)
mm_112761.1	chr13	19348943	19349143	+	1	NA	NA	NA	46770	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.462687	
mm_994.1	chr1	58712315	58712515	+	1	NA	NA	NA	-871	NM_009805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.005000	0.348259	
mm_90957.1	chr10	13291955	13292155	-	1	NA	NA	NA	32105	NM_001195096	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.000000	0.373134	
mm_51470.1	chr6	82960147	82960347	+	1	NA	NA	NA	13325	NM_033079	110958	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	0.000000	0.402985	
mm_8034.1	chr1	135167446	135167646	-	1	NA	NA	NA	135	NM_134438	171469	Mm.272290	NM_134438	ENSMUSG00000026424	Gpr37l1	AW047233|CAG-18|D0Kist8	G protein-coupled receptor 37-like 1	protein-coding	0.025000	0.626866	
mm_47817.1	chr5	134228157	134228357	-	1	NA	NA	NA	1368	NM_001286037	17969	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.010000	0.547264	
mm_17515.1	chr2	29194561	29194761	-	1	NA	NA	NA	53438	NM_001305805	171171	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	0.060000	0.577114	
mm_30183.1	chr3	144555244	144555444	-	1	NA	NA	NA	14872	NM_011828	23908	Mm.12863	NM_011828	ENSMUSG00000040151	Hs2st1	AW214369|Hs2st|mKIAA0448	heparan sulfate 2-O-sulfotransferase 1	protein-coding	0.020000	0.507463	
mm_155274.1	chrX	61116278	61116478	+	1	NA	NA	NA	0	NR_030706	331424	Mm.127263	NM_177916	ENSMUSG00000071753	C230004F18Rik	-	RIKEN cDNA C230004F18 gene	ncRNA	0.030000	0.462687	
mm_142719.1	chr17	48038196	48038396	-	1	NA	NA	NA	-3	NM_029689	76651	Mm.76918	NM_029689	ENSMUSG00000094928	1700122O11Rik	-	RIKEN cDNA 1700122O11 gene	protein-coding	0.010000	0.507463	-42(CTCCCTTTAAGC,-,0.00)
mm_151386.1	chr19	56396744	56396944	+	1	NA	NA	NA	-285	NM_007611	12369	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.050000	0.527363	
mm_172140.1	chr6	36809812	36810012	-	1	NA	NA	NA	1449	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.030000	0.577114	
mm_47328.1	chr5	122491623	122491823	-	1	NA	NA	NA	10502	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.025000	0.417910	
mm_48458.1	chr5	140773602	140773802	-	1	NA	NA	NA	49575	NM_173405	231842	Mm.491298	NM_173405	ENSMUSG00000050022	Amz1	5330426I05|6530401C20Rik	archaelysin family metallopeptidase 1	protein-coding	0.000000	0.422886	
mm_48979.1	chr6	4755257	4755457	+	1	NA	NA	NA	8051	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.070000	0.611940	
mm_53576.1	chr6	137410682	137410882	+	1	NA	NA	NA	61	NM_001164403	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.010000	0.447761	
mm_135562.1	chr16	50070645	50070845	-	1	NA	NA	NA	2107	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.000000	0.472637	
mm_162819.1	chr10	80228237	80228437	+	1	NA	NA	NA	1739	NM_023431	68114	Mm.273418	NM_023431	ENSMUSG00000020156	Mum1	2610019J09|9430059D04Rik|UBE-1C2	melanoma associated antigen (mutated) 1	protein-coding	0.035000	0.557214	
mm_399.1	chr1	34124525	34124725	+	1	NA	NA	NA	7266	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.025000	0.472637	
mm_49211.1	chr6	15725789	15725989	+	1	NA	NA	NA	5228	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.005000	0.258706	-100(AGCCTTAAAAAG,-,0.00),-98(CCTTAAAAAGAA,+,0.00)
mm_86163.1	chr9	118478629	118478829	-	1	NA	NA	NA	540	NM_010136	13813	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	0.080000	0.686567	
mm_55553.1	chr6	71262462	71262662	-	1	NA	NA	NA	-281	NM_009762	12180	Mm.234274	NM_009762	ENSMUSG00000055027	Smyd1	4632404M21Rik|Bop|C78565|Zmynd18	SET and MYND domain containing 1	protein-coding	0.005000	0.452736	
mm_43523.1	chr5	137152173	137152373	+	1	NA	NA	NA	-36066	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.482587	
mm_69291.1	chr7	128206346	128206546	-	1	NA	NA	NA	-80	NM_009943	12862	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	0.010000	0.462687	
mm_46419.1	chr5	104113474	104113674	-	1	NA	NA	NA	514	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding	0.015000	0.517413	
mm_135815.1	chr16	57644978	57645178	-	1	NA	NA	NA	-38211	NM_025599	66497	Mm.425976	NM_025599	ENSMUSG00000022748	Cmss1	1110001A06Rik|2610528E23Rik|4930572F24Rik|AV099812|AV122629	cms small ribosomal subunit 1	protein-coding	0.000000	0.388060	
mm_60210.1	chr7	43440750	43440950	+	1	NA	NA	NA	34	NM_028849	74276	Mm.159153	NM_028849	ENSMUSG00000038973	Cldnd2	1700071E18Rik	claudin domain containing 2	protein-coding	0.020000	0.577114	
mm_66337.1	chr7	43313159	43313359	-	1	NA	NA	NA	2	NM_027264	69930	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0.070000	0.522388	
mm_7954.1	chr1	133921252	133921452	-	1	NA	NA	NA	49	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.010000	0.577114	
mm_156880.1	chrX	166238874	166239074	+	1	NA	NA	NA	31	NM_001177962	14758	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	0.100000	0.751244	
mm_15273.1	chr2	155219556	155219756	+	1	NA	NA	NA	-16877	NR_111891	67068	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	0.015000	0.437811	
mm_3953.1	chr1	164062050	164062250	+	1	NA	NA	NA	74	NM_001164059	20343	Mm.1461	NM_011346	ENSMUSG00000026581	Sell	AI528707|CD62L|L-selectin|LECAM-1|Lnhr|Ly-22|Ly-m22|Lyam-1|Lyam1	selectin, lymphocyte	protein-coding	0.010000	0.517413	54(GCCTATAAGAGA,-,0.00)
mm_12133.1	chr2	61653502	61653702	+	1	NA	NA	NA	-58092	NM_021526	59029	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0.025000	0.358209	-66(ACTTTAATGGGG,+,0.00)
mm_82865.1	chr9	32344148	32344348	-	1	NA	NA	NA	-11	NM_010605	16521	Mm.69472	NM_010605	ENSMUSG00000032034	Kcnj5	GIRK4|Kir3.4	potassium inwardly-rectifying channel, subfamily J, member 5	protein-coding	0.055000	0.636816	
mm_105787.1	chr11	109827925	109828125	-	1	NA	NA	NA	21	NM_027038	69324	Mm.31700	NM_027038	ENSMUSG00000020617	1700012B07Rik	1700069D21Rik	RIKEN cDNA 1700012B07 gene	protein-coding	0.015000	0.472637	40(TTGTATAAAGGC,-,0.00)
mm_64876.1	chr7	14439558	14439758	-	1	NA	NA	NA	-1107	NM_001199306	76971	Mm.290727	NM_175250	ENSMUSG00000030378	Sult2a8	2810007J24Rik	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8	protein-coding	0.000000	0.417910	
mm_101840.1	chr11	48799303	48799503	-	1	NA	NA	NA	-957	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.005000	0.338308	-7(TTTTTTAAGGAG,+,0.00)
mm_22509.1	chr3	7612604	7612804	+	1	NA	NA	NA	189	NM_001313890	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.030000	0.552239	-33(GGGTTTAAAAGC,-,0.00)
mm_2595.1	chr1	119526053	119526253	+	1	NA	NA	NA	-1	NM_146103	226351	Mm.439806	NM_146103	ENSMUSG00000098923	Tmem185b	2500001K11Rik	transmembrane protein 185B	protein-coding	0.105000	0.731343	
mm_161094.1	chr12	91590322	91590522	-	1	NA	NA	NA	65	NM_175335	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.125000	0.711443	
mm_106842.1	chr12	8007331	8007531	+	1	NA	NA	NA	29754	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.020000	0.492537	
mm_137998.1	chr17	33759898	33760098	+	1	NA	NA	NA	488	NM_008997	19326	Mm.387587	NM_008997	ENSMUSG00000077450	Rab11b	A730055L17Rik	RAB11B, member RAS oncogene family	protein-coding	0.100000	0.736318	
mm_18390.1	chr2	60125718	60125918	-	1	NA	NA	NA	-78	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.015000	0.437811	-74(CCTTTTAGAGCT,+,0.00)
mm_126871.1	chr15	89373848	89374048	+	1	NA	NA	NA	-130	NM_001111288	100126824	Mm.287977	NM_001111288	ENSMUSG00000091780	Sco2	-	SCO2 cytochrome c oxidase assembly protein	protein-coding	0.085000	0.656716	
mm_141367.1	chr17	28943738	28943938	-	1	NA	NA	NA	-1576	NM_153390	69307	Mm.107605	NM_153390	ENSMUSG00000045378	Pxt1	1700001G18Rik|Stepp	peroxisomal, testis specific 1	protein-coding	0.030000	0.452736	
mm_148462.1	chr19	4081351	4081551	+	1	NA	NA	NA	-1037	NM_001160253	29866	Mm.46268	NM_013878	ENSMUSG00000024857	Cabp2	-	calcium binding protein 2	protein-coding	0.015000	0.532338	
mm_51631.1	chr6	85587434	85587634	+	1	NA	NA	NA	3	NM_145223	236266	Mm.246967	NM_145223	ENSMUSG00000063810	Alms1	bbb	Alstrom syndrome 1	protein-coding	0.105000	0.706468	
mm_142387.1	chr17	44814493	44814693	-	1	NA	NA	NA	34	NM_009820	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.025000	0.447761	-69(GAGTTTTAAAGC,-,0.00),47(GCGTTTAAATGG,-,0.00)
mm_161900.1	chr18	53464198	53464398	+	1	NA	NA	NA	-248	NM_001033281	225518	Mm.297645	NM_001033281	ENSMUSG00000069378	Prdm6	Gm92|PRISM	PR domain containing 6	protein-coding	0.100000	0.696517	
mm_99461.1	chr11	102435163	102435363	+	1	NA	NA	NA	4941	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.020000	0.552239	
mm_79916.1	chr9	65545851	65546051	+	1	NA	NA	NA	34136	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.010000	0.562189	
mm_148239.1	chr18	80597468	80597668	-	1	NA	NA	NA	-53022	NR_028424	100039348	Mm.254722	NR_028424		Gm2176	A430076E10Rik	glucosamine-6-phosphate deaminase 1 pseudogene	pseudo	0.010000	0.442786	
mm_57484.1	chr6	125254121	125254321	-	1	NA	NA	NA	-11304	NR_015527	73870	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.020000	0.462687	
mm_65667.1	chr7	28290608	28290808	-	1	NA	NA	NA	426	NM_175033	280621	Mm.212777	NM_175033	ENSMUSG00000046750	Selenov	Selv	selenoprotein V	protein-coding	0.050000	0.611940	
mm_73657.1	chr8	110961070	110961270	+	1	NA	NA	NA	36653	NM_007916	13680	Mm.287901	NM_007916	ENSMUSG00000015023	Ddx19a	DBP5|Ddx19|Eif4a-rs1	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a	protein-coding	0.005000	0.393035	
mm_119951.1	chr14	55053795	55053995	+	1	NA	NA	NA	15433	NR_073535	100151693	Mm.378403	NR_073535	ENSMUSG00000072492	Gm10364	EG545052|ENSMUSG00000072492	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.015000	0.616915	
mm_45460.1	chr5	67815721	67815921	-	1	NA	NA	NA	31610	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.020000	0.537313	
mm_21095.1	chr2	153225319	153225519	-	1	NA	NA	NA	22	NM_198617	241732	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.040000	0.616915	
mm_152471.1	chr19	10974556	10974756	-	1	NA	NA	NA	14	NM_023529	69826	Mm.273404	NM_023529	ENSMUSG00000024731	Ms4a10	2010001N17Rik	membrane-spanning 4-domains, subfamily A, member 10	protein-coding	0.005000	0.537313	
mm_114603.1	chr13	75771037	75771237	+	1	NA	NA	NA	63653	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.015000	0.328358	
mm_121695.1	chr14	13961752	13961952	-	1	NA	NA	NA	-539	NM_025435	66231	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.020000	0.522388	-33(CCCTTTAAGAAG,-,0.00),-32(CCTTTAAGAAGC,+,0.00)
mm_160833.1	chr11	46750599	46750799	+	1	NA	NA	NA	188	NM_001166631	171283	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	0.005000	0.442786	16(GCTTTTCTAGGT,+,0.00)
mm_102290.1	chr11	55406493	55406693	-	1	NA	NA	NA	13487	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.020000	0.557214	
mm_160704.1	chr10	51631462	51631662	-	1	NA	NA	NA	-104	NM_153071	210198	Mm.221031	NM_153071	ENSMUSG00000019905	Gprc6a	-	G protein-coupled receptor, family C, group 6, member A	protein-coding	0.010000	0.407960	
mm_134999.1	chr16	32174374	32174574	-	1	NA	NA	NA	-5326	NM_001033539	328660	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.025000	0.502488	
mm_53392.1	chr6	129582075	129582275	+	1	NA	NA	NA	3889	NM_153590	243655	Mm.30968	NM_153590	ENSMUSG00000050241	Klre1	Klre-1|NKG2I	killer cell lectin-like receptor family E member 1	protein-coding	0.005000	0.417910	
mm_111811.1	chr12	105489229	105489429	-	1	NA	NA	NA	-24104	NR_102381	104932	Mm.274150	NR_102381		AU015791	-	expressed sequence AU015791	ncRNA	0.000000	0.467662	
mm_103037.1	chr11	69761596	69761796	-	1	NA	NA	NA	148	NM_019871	56293	Mm.6211	NM_019871	ENSMUSG00000018776	Slc35g3	Amac1	solute carrier family 35, member G3	protein-coding	0.010000	0.512438	
mm_153586.1	chr19	43510112	43510312	-	1	NA	NA	NA	14393	NM_010324	14718	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.030000	0.497512	
mm_71747.1	chr8	65209048	65209248	+	1	NA	NA	NA	-79611	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA	0.005000	0.427861	
mm_134271.1	chr16	13986745	13986945	-	1	NA	NA	NA	22	NM_001270718	74482	Mm.484026	NM_028968	ENSMUSG00000065968	Ifitm7	4933438K12Rik|Mil4	interferon induced transmembrane protein 7	protein-coding	0.050000	0.601990	
mm_140964.1	chr17	24650191	24650391	-	1	NA	NA	NA	14	NM_023055	65962	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0.110000	0.781095	
mm_157366.1	chrX	37194700	37194900	-	1	NA	NA	NA	-3562	NM_019443	54405	Mm.34869	NM_019443	ENSMUSG00000016427	Ndufa1	1810049F12Rik|MWFE	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1	protein-coding	0.030000	0.492537	
mm_60517.1	chr7	44479793	44479993	+	1	NA	NA	NA	-4624	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.517413	
mm_106925.1	chr12	8351443	8351643	+	1	NA	NA	NA	38110	NM_021429	58240	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.005000	0.532338	
mm_24840.1	chr3	95661614	95661814	+	1	NA	NA	NA	2993	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.005000	0.338308	
mm_87106.1	chr10	33195873	33196073	+	1	NA	NA	NA	60384	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.005000	0.353234	-100(CCTTTTAAAATG,+,0.00)
mm_57931.1	chr6	134566796	134566996	-	1	NA	NA	NA	17	NM_008514	16974	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	0.165000	0.756219	
mm_84633.1	chr9	70934728	70934928	-	1	NA	NA	NA	-20	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.015000	0.447761	
mm_79744.1	chr9	62366843	62367043	+	1	NA	NA	NA	25600	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.025000	0.537313	
mm_74689.1	chr8	14995903	14996103	-	1	NA	NA	NA	-15022	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.020000	0.437811	41(GCTTTTAGAGTG,+,0.00),62(GCTTTTAGAGAT,+,0.00)
mm_97779.1	chr11	82215056	82215256	+	1	NA	NA	NA	-35344	NM_011329	20290	Mm.1283	NM_011329	ENSMUSG00000020702	Ccl1	BF534335|I-309|Scya1|Tca-3	chemokine (C-C motif) ligand 1	protein-coding	0.015000	0.512438	
mm_138422.1	chr17	35069486	35069686	+	1	NA	NA	NA	2261	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.005000	0.512438	
mm_68701.1	chr7	119642323	119642523	-	1	NA	NA	NA	24595	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.015000	0.472637	15(TGCTCTTAAAAG,-,0.00),16(GCTCTTAAAAGC,-,0.00)
mm_72447.1	chr8	83165493	83165693	+	1	NA	NA	NA	241	NM_027758	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.120000	0.721393	
mm_7662.1	chr1	128417178	128417378	-	1	NA	NA	NA	138	NM_177445	226414	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	0.065000	0.626866	
mm_96396.1	chr11	67250438	67250638	+	1	NA	NA	NA	12726	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.020000	0.482587	-34(TTCTTTAAAGCC,+,0.00),-33(TCTTTAAAGCCG,+,0.00)
mm_35698.1	chr4	44153889	44154089	-	1	NA	NA	NA	13549	NM_175201	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.020000	0.457711	
mm_139961.1	chr17	71642701	71642901	+	1	NA	NA	NA	1162	NR_028551	100217456		NR_028551	ENSMUSG00000092887	Snord53	MBII-35	small nucleolar RNA, C/D box 53	snoRNA	0.020000	0.407960	
mm_90071.1	chr10	116365266	116365466	+	1	NA	NA	NA	-52755	NR_028107	67342	Mm.245800	NM_026098	ENSMUSG00000020164	Kcnmb4os1	1700058G18Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1	ncRNA	0.000000	0.427861	
mm_82392.1	chr9	14675951	14676151	-	1	NA	NA	NA	-61051	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.025000	0.537313	
mm_117985.1	chr13	100174473	100174673	-	1	NA	NA	NA	27549	NM_001126182	17948	Mm.89961	NM_010872	ENSMUSG00000078945	Naip2	Birc1b|Naip-rs6	NLR family, apoptosis inhibitory protein 2	protein-coding	0.005000	0.457711	
mm_151576.1	chr19	61151511	61151711	+	1	NA	NA	NA	-10771	NR_131954	414758	Mm.100056	NM_001001737	ENSMUSG00000074733	Zfp950	5830428H23Rik|AU016073|BC055757|Gm34518|Zfp826|mszf84	zinc finger protein 950	protein-coding	0.035000	0.582090	
mm_21236.1	chr2	156111860	156112060	-	1	NA	NA	NA	5	NM_170598	75710	Mm.27660	NM_029397	ENSMUSG00000089824	Rbm12	5730420G12Rik|9430070C08Rik|AI852903|SWAN|mKIAA0765	RNA binding motif protein 12	protein-coding	0.105000	0.676617	
mm_171261.1	chr3	83943666	83943866	-	1	NA	NA	NA	96395	NM_172681	229473	Mm.28838	NM_172681	ENSMUSG00000033767	D930015E06Rik	Kiaa0922|mKIAA0922	RIKEN cDNA D930015E06 gene	protein-coding	0.005000	0.452736	
mm_33176.1	chr4	126054861	126055061	+	1	NA	NA	NA	-3604	NM_172701	230751	Mm.38907	NM_172701	ENSMUSG00000042616	Oscp1	1810007P19Rik|5730415O04|6030436A01Rik	organic solute carrier partner 1	protein-coding	0.025000	0.457711	
mm_132656.1	chr16	41564631	41564831	+	1	NA	NA	NA	31389	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.015000	0.353234	
mm_111306.1	chr12	85747605	85747805	-	1	NA	NA	NA	1166	NM_145447	217721	Mm.301076	NM_145447	ENSMUSG00000034258	Mfsd7c	CCT|Flvcr2	major facilitator superfamily domain containing 7C	protein-coding	0.010000	0.477612	
mm_155187.1	chrX	56346303	56346503	+	1	NA	NA	NA	3	NM_030139	78619	Mm.207345	NM_030139	ENSMUSG00000073176	Zfp449	9530049C15Rik	zinc finger protein 449	protein-coding	0.110000	0.716418	-81(GGCTCTAAAAGC,-,0.00),-80(GCTCTAAAAGCG,+,0.00)
mm_129586.1	chr15	79774289	79774489	-	1	NA	NA	NA	78	NM_017470	54152	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	0.100000	0.711443	
mm_149786.1	chr19	23140846	23141046	+	1	NA	NA	NA	-280	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.120000	0.701493	47(CCTTTTAAATGT,+,0.00)
mm_72522.1	chr8	83976764	83976964	+	1	NA	NA	NA	-19	NM_001277898	18747	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0.005000	0.532338	
mm_44591.1	chr5	24995600	24995800	-	1	NA	NA	NA	53	NM_001310480	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.020000	0.562189	
mm_6666.1	chr1	80289782	80289982	-	1	NA	NA	NA	50808	NM_001313728	26554	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.000000	0.283582	
mm_145952.1	chr18	67641474	67641674	+	1	NA	NA	NA	-25	NM_134138	107047	Mm.150701	NM_134138	ENSMUSG00000024537	Psmg2	1700017I17Rik|AW545363|Clast3|Tnfsf5ip1	proteasome (prosome, macropain) assembly chaperone 2	protein-coding	0.130000	0.726368	
mm_77074.1	chr8	110142897	110143097	-	1	NA	NA	NA	25209	NM_007586	12308	Mm.2755	NM_007586	ENSMUSG00000003657	Calb2	CR	calbindin 2	protein-coding	0.020000	0.616915	
mm_25562.1	chr3	116562885	116563085	+	1	NA	NA	NA	12	NM_175413	109245	Mm.216027	NM_027321	ENSMUSG00000027961	Lrrc39	2010005E21Rik|9430028I06Rik|Myomasp	leucine rich repeat containing 39	protein-coding	0.020000	0.452736	
mm_102333.1	chr11	57829211	57829411	-	1	NA	NA	NA	2836	NM_008213	15110	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed transcript 1	protein-coding	0.050000	0.517413	
mm_101880.1	chr11	48913855	48914055	-	1	NA	NA	NA	-11803	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.000000	0.293532	
mm_86957.1	chr10	24954133	24954333	+	1	NA	NA	NA	-26763	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.015000	0.427861	
mm_72045.1	chr8	71272667	71272867	+	1	NA	NA	NA	53	NM_001142323	17925	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0.145000	0.756219	
mm_57687.1	chr6	128513698	128513898	-	1	NA	NA	NA	12922	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.030000	0.447761	
mm_129343.1	chr15	77842044	77842244	-	1	NA	NA	NA	31	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.090000	0.701493	
mm_50257.1	chr6	42980566	42980766	+	1	NA	NA	NA	25166	NM_146656	258650	Mm.377613	NM_146656	ENSMUSG00000073110	Olfr444	MOR261-2	olfactory receptor 444	protein-coding	0.000000	0.437811	
mm_73063.1	chr8	94386415	94386615	+	1	NA	NA	NA	15	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.115000	0.676617	-52(GCCCATAAAAGG,-,0.00)
mm_6860.1	chr1	84275001	84275201	-	1	NA	NA	NA	9544	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.000000	0.457711	
mm_141141.1	chr17	26465017	26465217	-	1	NA	NA	NA	43355	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.025000	0.557214	
mm_48361.1	chr5	139408348	139408548	-	1	NA	NA	NA	2061	NM_177000	319772	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.020000	0.567164	
mm_29495.1	chr3	115888012	115888212	-	1	NA	NA	NA	8	NR_027895	68161	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.070000	0.611940	
mm_32456.1	chr4	107367980	107368180	+	1	NA	NA	NA	296	NM_028355	72787	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0.110000	0.731343	
mm_128760.1	chr15	65912252	65912452	-	1	NA	NA	NA	-65	NM_010953	18256	Mm.41776	NM_010953	ENSMUSG00000015001	Oc90	Ocn-95|PLA2L|Pla2ll|oc95	otoconin 90	protein-coding	0.005000	0.502488	
mm_128900.1	chr15	73296618	73296818	-	1	NA	NA	NA	-41836	NR_029561	387169		NR_029561	ENSMUSG00000065612	Mir151	Mirn151|mir-151|mmu-mir-151	microRNA 151	ncRNA	0.025000	0.477612	
mm_167322.1	chr8	68157465	68157665	+	1	NA	NA	NA	-118963	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.000000	0.442786	-34(ACCTATAAAAGG,-,0.00)
mm_62683.1	chr7	110018161	110018361	+	1	NA	NA	NA	-164	NM_181517	233726	Mm.222328	NM_181517	ENSMUSG00000066232	Ipo7	A330055O14Rik|C330016G14|Imp7|Ranbp7	importin 7	protein-coding	0.110000	0.671642	
mm_29408.1	chr3	108911372	108911572	-	1	NA	NA	NA	232	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.120000	0.716418	
mm_26213.1	chr3	138756494	138756694	+	1	NA	NA	NA	14386	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.010000	0.402985	
mm_110360.1	chr12	40037866	40038066	-	1	NA	NA	NA	21	NM_001039515	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.190000	0.805970	
mm_23405.1	chr3	58414656	58414856	+	1	NA	NA	NA	36	NM_001081229	72033	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.135000	0.741294	
mm_52107.1	chr6	97883948	97884148	+	1	NA	NA	NA	-45769	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.313433	
mm_130835.1	chr15	101848955	101849155	-	1	NA	NA	NA	1731	NM_008473	16678	Mm.183137	NM_008473	ENSMUSG00000046834	Krt1	Krt-2.1|Krt2-1|Krt86	keratin 1	protein-coding	0.020000	0.497512	
mm_165716.1	chr3	100489316	100489516	-	1	NA	NA	NA	-224	NM_001142952	74645	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.115000	0.676617	
mm_4385.1	chr1	172210234	172210434	+	1	NA	NA	NA	-3530	NM_011063	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.070000	0.562189	
mm_139576.1	chr17	57062434	57062634	+	1	NA	NA	NA	257	NM_177638	224912	Mm.284447	NM_177638	ENSMUSG00000044279	Crb3	5730439B18|AU015179|AU041752	crumbs family member 3	protein-coding	0.065000	0.661692	
mm_135325.1	chr16	38800101	38800301	-	1	NA	NA	NA	2	NM_178924	22268	Mm.130793	NM_178924	ENSMUSG00000049436	Upk1b	AI413235|Tspan20|UPIb|Upk1	uroplakin 1B	protein-coding	0.025000	0.587065	-34(GGGTAGAAAAGC,-,0.00)
mm_46965.1	chr5	115152276	115152476	-	1	NA	NA	NA	5800	NM_175403	109154	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0.010000	0.482587	
mm_7511.1	chr1	123853856	123854056	-	1	NA	NA	NA	191603	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.243781	
mm_148093.1	chr18	73815609	73815809	-	1	NA	NA	NA	-317	NM_145494	107029	Mm.36817	NM_145494	ENSMUSG00000024556	Me2	AW120568|D030040L20Rik|NAD-ME	malic enzyme 2, NAD(+)-dependent, mitochondrial	protein-coding	0.115000	0.656716	
mm_134720.1	chr16	22896508	22896708	-	1	NA	NA	NA	-2222	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.000000	0.462687	
mm_102921.1	chr11	69600159	69600359	-	1	NA	NA	NA	5701	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.010000	0.577114	
mm_16112.1	chr2	169684188	169684388	+	1	NA	NA	NA	50642	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.015000	0.402985	-24(GGCTTTAAATGC,-,0.00)
mm_30595.1	chr4	6365632	6365832	+	1	NA	NA	NA	52	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.145000	0.791045	
mm_110602.1	chr12	56535911	56536111	-	1	NA	NA	NA	897	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.055000	0.626866	
mm_109408.1	chr12	110447121	110447321	+	1	NA	NA	NA	42	NM_001135001	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.185000	0.825871	
mm_161354.1	chr14	55721874	55722074	-	1	NA	NA	NA	202	NM_019519	56187	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0.065000	0.656716	
mm_9326.1	chr1	171844736	171844936	-	1	NA	NA	NA	5139	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.000000	0.343284	
mm_165678.1	chr3	90659870	90660070	+	1	NA	NA	NA	5668	NM_199422	381493	Mm.291525	NM_199422	ENSMUSG00000063767	S100a7a	AY465109|Gm1020|S100A7L1|S100A7f|S100a15|S100a15a|S100a17l1	S100 calcium binding protein A7A	protein-coding	0.000000	0.422886	
mm_82578.1	chr9	21141959	21142159	-	1	NA	NA	NA	7847	NM_016742	12539	Mm.32331	NM_016742	ENSMUSG00000019471	Cdc37	p50|p50Cdc37	cell division cycle 37	protein-coding	0.030000	0.552239	
mm_157296.1	chrX	20927596	20927796	-	1	NA	NA	NA	3859	NM_008823	18636	Mm.3064	NM_008823	ENSMUSG00000001128	Cfp	BCFG|Pfc	complement factor properdin	protein-coding	0.025000	0.557214	-68(CCTTTACTGGCC,+,0.00)
mm_111216.1	chr12	84408913	84409113	-	1	NA	NA	NA	16	NM_007647	12499	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0.190000	0.781095	
mm_98634.1	chr11	96124396	96124596	+	1	NA	NA	NA	-9290	NM_172799	237930	Mm.249912	NM_172799	ENSMUSG00000038756	Ttll6	4932418K24Rik|D11Moh43e|D11Moh44e|t8130b59	tubulin tyrosine ligase-like family, member 6	protein-coding	0.090000	0.671642	
mm_36192.1	chr4	62326002	62326202	-	1	NA	NA	NA	34446	NM_001045528	338355	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.010000	0.512438	
mm_136437.1	chr16	94498562	94498762	-	1	NA	NA	NA	27967	NM_007834	13185	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	Down syndrome critical region gene 3	protein-coding	0.000000	0.507463	
mm_3580.1	chr1	151132887	151133087	+	1	NA	NA	NA	-5047	NR_038011	402734	Mm.337666	NR_038011		C730036E19Rik	lncLSTR	RIKEN cDNA C730036E19 gene	ncRNA	0.015000	0.447761	
mm_32016.1	chr4	94820677	94820877	+	1	NA	NA	NA	81488	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	endothelial-specific receptor tyrosine kinase	protein-coding	0.010000	0.333333	
mm_113279.1	chr13	30003310	30003510	+	1	NA	NA	NA	-17347	NM_010093	13557	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.030000	0.562189	
mm_147377.1	chr18	43687543	43687743	-	1	NA	NA	NA	130	NM_001163637	76217	Mm.134602	NM_001163637	ENSMUSG00000024502	Jakmip2	6430702L21Rik|AI850334|D930046L20Rik	janus kinase and microtubule interacting protein 2	protein-coding	0.030000	0.587065	
mm_74718.1	chr8	17380833	17381033	-	1	NA	NA	NA	154452	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.000000	0.293532	20(ATCTTTAAAAGA,-,0.00),21(TCTTTAAAAGAT,+,0.00)
mm_134210.1	chr16	11175963	11176163	-	1	NA	NA	NA	330	NR_027502	106205	Mm.226860	NM_145931	ENSMUSG00000037965	Zc3h7a	A430104C18Rik|AI447294|AW556219|HSPC055|Zc3h7|Zc3hdc7	zinc finger CCCH type containing 7 A	protein-coding	0.135000	0.686567	
mm_38242.1	chr4	136573981	136574181	-	1	NA	NA	NA	28642	NM_133872	99982	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	0.015000	0.452736	
mm_65703.1	chr7	28377772	28377972	-	1	NA	NA	NA	1356	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.035000	0.636816	-65(GCTTTTCTGGCC,+,0.00)
mm_41120.1	chr5	87781720	87781920	+	1	NA	NA	NA	7370	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.010000	0.457711	
mm_57843.1	chr6	129467476	129467676	-	1	NA	NA	NA	5203	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.407960	
mm_78210.1	chr9	21491270	21491470	+	1	NA	NA	NA	5194	NR_029585	387194		NR_029585	ENSMUSG00000065547	Mir199a-1	Mirn199|Mirn199a-1|mir-199a-1	microRNA 199a-1	ncRNA	0.000000	0.422886	
mm_26478.1	chr3	144677555	144677755	+	1	NA	NA	NA	42680	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.025000	0.512438	
mm_133179.1	chr16	72563317	72563517	+	1	NA	NA	NA	-99732	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.015000	0.502488	
mm_6244.1	chr1	67038748	67038948	-	1	NA	NA	NA	-14	NM_001190984	14768	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	0.100000	0.656716	
mm_159410.1	chr3	103279170	103279370	+	1	NA	NA	NA	-23	NM_053170	94093	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.075000	0.616915	
mm_66746.1	chr7	46712010	46712210	-	1	NA	NA	NA	-1459	NM_030233	78935	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.015000	0.492537	
mm_130154.1	chr15	91191319	91191519	-	1	NA	NA	NA	388	NM_011994	26874	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.030000	0.457711	
mm_19050.1	chr2	77259725	77259925	-	1	NA	NA	NA	20767	NM_175465	228071	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.005000	0.393035	
mm_69051.1	chr7	126861762	126861962	-	1	NA	NA	NA	-110	NM_172746	233876	Mm.363427	NM_172746	ENSMUSG00000042606	Hirip3	B130036O03|C86302	HIRA interacting protein 3	protein-coding	0.115000	0.651741	
mm_26631.1	chr3	152912627	152912827	+	1	NA	NA	NA	69480	NM_012028	26938	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.025000	0.432836	
mm_155211.1	chrX	56786450	56786650	+	1	NA	NA	NA	23	NM_001287800	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.005000	0.432836	
mm_161210.1	chr13	62558505	62558705	-	1	NA	NA	NA	-6	NM_001162911	77117	Mm.470091	NM_175252	ENSMUSG00000074865	Zfp934	6720457D02Rik	zinc finger protein 934	protein-coding	0.035000	0.552239	
mm_165774.1	chr3	128610845	128611045	+	1	NA	NA	NA	-379340	NR_045704	402774	Mm.209170	NR_045704	ENSMUSG00000105816	D030025E07Rik	-	RIKEN cDNA D030025E07 gene	ncRNA	0.015000	0.537313	
mm_134365.1	chr16	17111094	17111294	-	1	NA	NA	NA	58	NM_001252445	66053	Mm.253614	NM_144954	ENSMUSG00000022771	Ppil2	0610009L05Rik|1700016N17Rik|4921520K19Rik|4930511F14Rik|AA589416|C130078A06Rik|CYC4	peptidylprolyl isomerase (cyclophilin)-like 2	protein-coding	0.070000	0.552239	
mm_163139.1	chr11	79339540	79339740	+	1	NA	NA	NA	-252	NM_010897	18015	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0.095000	0.671642	
mm_11631.1	chr2	34775634	34775834	+	1	NA	NA	NA	3644	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.015000	0.402985	
mm_8184.1	chr1	138082079	138082279	-	1	NA	NA	NA	92947	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.373134	
mm_140362.1	chr17	86917319	86917519	+	1	NA	NA	NA	71	NM_030104	78469	Mm.67234	NM_030104	ENSMUSG00000037689	Tmem247	1700090G07Rik	transmembrane protein 247	protein-coding	0.020000	0.552239	
mm_48965.1	chr6	4600827	4601027	+	1	NA	NA	NA	-139	NM_145398	213819	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1	CAS1 domain containing 1	protein-coding	0.105000	0.756219	-57(CGCTATTAAGGC,-,0.00)
mm_155774.1	chrX	96334238	96334438	+	1	NA	NA	NA	33581	NM_001310754	245525	Mm.166749	NM_172931	ENSMUSG00000045802	Hsf3	B230358A15Rik|HSF 3|HSTF 3	heat shock transcription factor 3	protein-coding	0.000000	0.318408	
mm_68290.1	chr7	105736297	105736497	-	1	NA	NA	NA	187	NM_025897	101867	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.100000	0.696517	
mm_51689.1	chr6	86526187	86526387	+	1	NA	NA	NA	-122	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.100000	0.601990	
mm_25597.1	chr3	116903492	116903692	+	1	NA	NA	NA	41912	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.000000	0.393035	
mm_162220.1	chrX	140813397	140813597	-	1	NA	NA	NA	-64	NM_031381	83555	Mm.193025	NM_031381	ENSMUSG00000042386	Tex13b	4933403J23Rik|Tex13	testis expressed 13B	protein-coding	0.060000	0.552239	
mm_60069.1	chr7	31302657	31302857	+	1	NA	NA	NA	-12	NM_207262	381970	Mm.333771	NM_207262	ENSMUSG00000036521	Scgb2b2	Abpbg2|Abpe|lacrimal	secretoglobin, family 2B, member 2	protein-coding	0.000000	0.522388	-28(TGGTTTATATGG,-,0.00)
mm_106975.1	chr12	9029930	9030130	+	1	NA	NA	NA	33	NM_029321	75516	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0.100000	0.641791	
mm_77871.1	chr9	6168379	6168579	+	1	NA	NA	NA	-133	NM_027924	71785	Mm.390122	NM_027924	ENSMUSG00000032006	Pdgfd	1110003I09Rik	platelet-derived growth factor, D polypeptide	protein-coding	0.045000	0.616915	
mm_130566.1	chr15	99424442	99424642	-	1	NA	NA	NA	31323	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.015000	0.537313	
mm_111223.1	chr12	84617273	84617473	-	1	NA	NA	NA	93	NM_008992	19300	Mm.229109	NM_008992	ENSMUSG00000021240	Abcd4	P69r|P70R|Pxmp1l	ATP-binding cassette, sub-family D (ALD), member 4	protein-coding	0.095000	0.701493	
mm_57653.1	chr6	128438586	128438786	-	1	NA	NA	NA	-55	NM_010219	14228	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	59kDa|AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	0.170000	0.800995	
mm_96406.1	chr11	67251768	67251968	+	1	NA	NA	NA	14056	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.050000	0.552239	
mm_122994.1	chr14	54990860	54991060	-	1	NA	NA	NA	3589	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.015000	0.497512	
mm_157513.1	chrX	49288147	49288347	-	1	NA	NA	NA	-5	NM_001271450	209224	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	0.040000	0.597015	
mm_57158.1	chr6	122742418	122742618	-	1	NA	NA	NA	227	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.025000	0.532338	
mm_44555.1	chr5	24601884	24602084	-	1	NA	NA	NA	18	NM_025891	66993	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.090000	0.671642	
mm_83364.1	chr9	44417943	44418143	-	1	NA	NA	NA	-36	NM_201372	382073	Mm.259573	NM_201372	ENSMUSG00000043923	Ccdc84	D630044F24Rik|Gm1114	coiled-coil domain containing 84	protein-coding	0.095000	0.661692	
mm_31469.1	chr4	49631905	49632105	+	1	NA	NA	NA	-55	NM_001163263	109331	Mm.24765	NM_182999	ENSMUSG00000028309	Rnf20	4833430L21Rik|AW540162|C79397|mKIAA4116	ring finger protein 20	protein-coding	0.085000	0.636816	
mm_43256.1	chr5	130222259	130222459	+	1	NA	NA	NA	24	NM_027854	71667	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0.165000	0.726368	
mm_163570.1	chr13	30136377	30136577	+	1	NA	NA	NA	-13	NM_153546	218121	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	0.115000	0.781095	
mm_162813.1	chr10	79686343	79686543	+	1	NA	NA	NA	-2577	NM_001302485	16904	Mm.378960	NM_008504	ENSMUSG00000054206	Gzmm	Lmet1|MMET-1	granzyme M (lymphocyte met-ase 1)	protein-coding	0.005000	0.532338	
mm_41176.1	chr5	88007983	88008183	+	1	NA	NA	NA	5558	NM_011422	20599	Mm.261199	NM_011422	ENSMUSG00000029280	Smr3a	AA589601|MSG1|MSG3|Smr1|Smr3	submaxillary gland androgen regulated protein 3A	protein-coding	0.005000	0.497512	
mm_125341.1	chr15	39076869	39077069	+	1	NA	NA	NA	37	NM_026778	68588	Mm.41556	NM_026778	ENSMUSG00000054196	Cthrc1	1110014B07Rik	collagen triple helix repeat containing 1	protein-coding	0.075000	0.691542	
mm_10791.1	chr2	24349315	24349515	+	1	NA	NA	NA	4044	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.015000	0.462687	-57(CCTTTTAGAGGA,+,0.00)
mm_133635.1	chr16	91659586	91659786	+	1	NA	NA	NA	11862	NM_178880	20658	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	0.010000	0.442786	
mm_163878.1	chr14	19419521	19419721	+	1	NA	NA	NA	182966	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.010929	0.326087	
mm_118064.1	chr13	102901798	102901998	-	1	NA	NA	NA	141643	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.005000	0.318408	
mm_140881.1	chr17	23829019	23829219	-	1	NA	NA	NA	-10	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.165000	0.840796	
mm_104094.1	chr11	86683704	86683904	-	1	NA	NA	NA	18	NM_029478	75909	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0.095000	0.656716	-68(GCTCCTTAAAGG,-,0.00)
mm_51138.1	chr6	68980265	68980465	+	1	NA	NA	NA	346809	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.020000	0.532338	
mm_62079.1	chr7	92928616	92928816	+	1	NA	NA	NA	53463	NM_028243	72461	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.010000	0.432836	
mm_162247.1	chrX	159988337	159988537	+	1	NA	NA	NA	4	NM_001163085	270672	Mm.386889	NM_001163085	ENSMUSG00000031303	Map3k15	BC031147|MEKK15	mitogen-activated protein kinase kinase kinase 15	protein-coding	0.125000	0.781095	
mm_129688.1	chr15	81465950	81466150	-	1	NA	NA	NA	-266	NM_019712	56438	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.075000	0.661692	
mm_114262.1	chr13	56963743	56963943	+	1	NA	NA	NA	-68054	NM_001302373	26946	Mm.62409	NM_012035	ENSMUSG00000021541	Trpc7	TRP7|Trrp8	transient receptor potential cation channel, subfamily C, member 7	protein-coding	0.005000	0.472637	
mm_137224.1	chr17	24251887	24252087	+	1	NA	NA	NA	-578	NM_007634	12449	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	0.015000	0.537313	
mm_18559.1	chr2	65238417	65238617	-	1	NA	NA	NA	109	NM_177025	319876	Mm.34159	NM_027225	ENSMUSG00000034903	Cobll1	1810047P18Rik|Coblr1|D430044D16Rik	Cobl-like 1	protein-coding	0.145000	0.800995	
mm_21272.1	chr2	156862886	156863086	-	1	NA	NA	NA	-41	NR_027914	74487	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA	0.145000	0.716418	
mm_64333.1	chr7	142303432	142303632	+	1	NA	NA	NA	30	NM_015809	50775	Mm.389990	NM_015809	ENSMUSG00000045236	Krtap5-4	-	keratin associated protein 5-4	protein-coding	0.000000	0.517413	
mm_30194.1	chr3	144710384	144710584	-	1	NA	NA	NA	9851	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.000000	0.333333	
mm_44089.1	chr5	149235179	149235379	+	1	NA	NA	NA	-29725	NM_001308462	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.020000	0.537313	
mm_142975.1	chr17	56140259	56140459	-	1	NA	NA	NA	-16	NM_001130456	20359	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0.155000	0.791045	
mm_150832.1	chr19	44756606	44756806	+	1	NA	NA	NA	-688	NM_011037	18504	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0.060000	0.681592	-34(GCTTTTAGAGAG,+,0.00)
mm_74960.1	chr8	26119079	26119279	-	1	NA	NA	NA	45	NM_207659	320191	Mm.334464	NM_207659	ENSMUSG00000037234	Hook3	5830454D03Rik|AI317159|E330005F07Rik	hook microtubule tethering protein 3	protein-coding	0.150000	0.751244	
mm_114112.1	chr13	54913150	54913350	+	1	NA	NA	NA	-36161	NM_001311128	107448	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	0.030000	0.606965	
mm_70976.1	chr8	27172187	27172387	+	1	NA	NA	NA	2359	NM_029423	75767	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.015000	0.407960	
mm_164239.1	chr15	92396860	92397060	+	1	NA	NA	NA	150	NM_001164593	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding	0.075000	0.656716	
mm_54952.1	chr6	48681711	48681911	-	1	NA	NA	NA	-2767	NM_001243200	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.000000	0.427861	
mm_95950.1	chr11	58390145	58390345	+	1	NA	NA	NA	9599	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.025000	0.517413	
mm_6475.1	chr1	74069121	74069321	-	1	NA	NA	NA	55226	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.015000	0.552239	
mm_135131.1	chr16	35843957	35844157	-	1	NA	NA	NA	27325	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.010000	0.507463	
mm_43664.1	chr5	138754545	138754745	+	1	NA	NA	NA	-436	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.120000	0.706468	
mm_163579.1	chr13	33569435	33569635	-	1	NA	NA	NA	-218	NR_131141	619715	Mm.390575	NR_131140		Gm6093	EG619715	predicted gene 6093	ncRNA	0.005000	0.432836	
mm_42010.1	chr5	108065657	108065857	+	1	NA	NA	NA	83	NM_013827	17765	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0.080000	0.626866	
mm_64254.1	chr7	141744557	141744757	+	1	NA	NA	NA	-44354	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.020690	0.513699	
mm_166695.1	chr6	113740631	113740831	-	1	NA	NA	NA	-50	NM_024206	110379	Mm.29296	NM_024206	ENSMUSG00000030298	Sec13	1110003H02Rik|Sec13l1|Sec13r	SEC13 homolog, nuclear pore and COPII coat complex component	protein-coding	0.090000	0.621891	
mm_49256.1	chr6	17463337	17463537	+	1	NA	NA	NA	-520	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.080000	0.641791	
mm_159253.1	chr2	152572643	152572843	+	1	NA	NA	NA	-1	NM_207276	403172	Mm.84518	NM_207276	ENSMUSG00000056544	Defb21	4930525K10Rik|Gm121	defensin beta 21	protein-coding	0.005000	0.447761	
mm_109125.1	chr12	105761309	105761509	+	1	NA	NA	NA	-23288	NM_011112	18789	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0.035000	0.462687	
mm_110497.1	chr12	54203703	54203903	-	1	NA	NA	NA	71	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	0.085000	0.666667	
mm_2316.1	chr1	91984686	91984886	+	1	NA	NA	NA	183325	NM_007855	13345	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	0.025000	0.522388	
mm_43762.1	chr5	140702369	140702569	+	1	NA	NA	NA	-91	NM_001347517	74239	Mm.179704	NM_028833	ENSMUSG00000036555	Iqce	1700028P05Rik|mKIAA1023	IQ motif containing E	protein-coding	0.045000	0.472637	
mm_109572.1	chr12	112107197	112107397	+	1	NA	NA	NA	614	NM_001081169	104816	Mm.77133	NM_001081169	ENSMUSG00000037686	Aspg	A530050D06Rik|AI429460|Gm690	asparaginase	protein-coding	0.005000	0.547264	
mm_72518.1	chr8	83955583	83955783	+	1	NA	NA	NA	-11	NM_024184	66929	Mm.29680	NM_024184	ENSMUSG00000005470	Asf1b	1700003K02Rik|AA409591	anti-silencing function 1B histone chaperone	protein-coding	0.105000	0.646766	
mm_15938.1	chr2	165729990	165730190	+	1	NA	NA	NA	74792	NM_010165	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	0.000000	0.378109	
mm_114021.1	chr13	52620841	52621041	+	1	NA	NA	NA	24059	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.015000	0.512438	
mm_92952.1	chr10	85198333	85198533	-	1	NA	NA	NA	-13379	NM_007771	12952	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0.005000	0.497512	
mm_7512.1	chr1	123887246	123887446	-	1	NA	NA	NA	158213	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.462687	
mm_64624.1	chr7	3677390	3677590	-	1	NA	NA	NA	63	NM_181820	353499	Mm.360398	NM_181820	ENSMUSG00000019734	Tmc4	-	transmembrane channel-like gene family 4	protein-coding	0.025000	0.616915	
mm_17603.1	chr2	30889991	30890191	-	1	NA	NA	NA	13206	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.010000	0.557214	-70(GGCCATTAAGGA,-,0.00)
mm_37993.1	chr4	133658741	133658941	-	1	NA	NA	NA	13806	NM_001145955	230801	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.005000	0.611940	-36(CACTATAAAAGG,-,0.00)
mm_124996.1	chr15	23036331	23036531	+	1	NA	NA	NA	-32	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding	0.055000	0.676617	
mm_146907.1	chr18	31316921	31317121	-	1	NA	NA	NA	107	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding	0.035000	0.502488	
mm_35108.1	chr4	9643576	9643776	-	1	NA	NA	NA	41	NM_001177853	65973	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.010000	0.537313	
mm_34684.1	chr4	151862098	151862298	+	1	NA	NA	NA	-430	NM_001195565	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.095000	0.666667	
mm_168561.1	chr11	6894957	6895157	-	1	NA	NA	NA	-168432	NM_009622	432530	Mm.259733	NM_009622	ENSMUSG00000020431	Adcy1	AC1|D11Bwg1392e|I-AC|brl|mKIAA4070	adenylate cyclase 1	protein-coding	0.005000	0.532338	
mm_104419.1	chr11	94760847	94761047	-	1	NA	NA	NA	235	NM_001105561	217122	Mm.24063	NM_183153		Gm11545	A430060F13Rik|C86086|OTTMUSG00000002043	predicted gene 11545	protein-coding	0.020000	0.577114	
mm_111944.1	chr12	109053216	109053416	-	1	NA	NA	NA	14901	NM_001163175	380785	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0.105000	0.706468	
mm_18200.1	chr2	45197294	45197494	-	1	NA	NA	NA	-84115	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.025000	0.462687	
mm_11138.1	chr2	28476988	28477188	+	1	NA	NA	NA	9022	NM_001166031	118451	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	0.050000	0.482587	
mm_105957.1	chr11	115419796	115419996	-	1	NA	NA	NA	23	NM_027862	71679	Mm.371641	NM_027862	ENSMUSG00000034566	Atp5h	0610009D10Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit D	protein-coding	0.060000	0.567164	
mm_105638.1	chr11	106999367	106999567	-	1	NA	NA	NA	58	NM_010655	16647	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.095000	0.572139	
mm_142565.1	chr17	46674169	46674369	-	1	NA	NA	NA	-14	NM_144857	224823	Mm.45101	NM_144857	ENSMUSG00000023971	Rrp36	-	ribosomal RNA processing 36 homolog (S. cerevisiae)	protein-coding	0.075000	0.641791	
mm_55770.1	chr6	78467492	78467692	-	1	NA	NA	NA	1282	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.005000	0.472637	
mm_92954.1	chr10	85266244	85266444	-	1	NA	NA	NA	-81290	NM_007771	12952	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0.030000	0.572139	
mm_131852.1	chr16	23062019	23062219	+	1	NA	NA	NA	3819	NM_001102412	16644	Mm.2160	NM_023125	ENSMUSG00000022875	Kng1	Kng	kininogen 1	protein-coding	0.005000	0.447761	
mm_135795.1	chr16	57198908	57199108	-	1	NA	NA	NA	-31676	NM_023175	52633	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.030000	0.517413	
mm_142120.1	chr17	35868215	35868415	-	1	NA	NA	NA	1700	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.010000	0.601990	
mm_7278.1	chr1	97645418	97645618	-	1	NA	NA	NA	16500	NM_133825	52392	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.020000	0.407960	
mm_35267.1	chr4	19900829	19901029	-	1	NA	NA	NA	21637	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.015000	0.323383	
mm_94026.1	chr10	127668778	127668978	-	1	NA	NA	NA	1755	NR_045171	72243	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0.035000	0.552239	
mm_152054.1	chr19	6278108	6278308	-	1	NA	NA	NA	1312	NM_010119	13660	Mm.30169	NM_010119	ENSMUSG00000024772	Ehd1	AA409636|Past1|RME-1	EH-domain containing 1	protein-coding	0.010000	0.527363	-42(CCTTAAAGATCC,+,0.00)
mm_161529.1	chr15	101892626	101892826	-	1	NA	NA	NA	194	NM_001033177	77055	Mm.195788	NM_001033177	ENSMUSG00000075402	Krt76	2310001L23Rik	keratin 76	protein-coding	0.030000	0.636816	
mm_76035.1	chr8	77387215	77387415	-	1	NA	NA	NA	-129741	NR_028125	70345	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.010000	0.437811	
mm_71431.1	chr8	46492871	46493071	+	1	NA	NA	NA	2005	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.025000	0.577114	
mm_71871.1	chr8	69208989	69209189	+	1	NA	NA	NA	43	NM_001013379	234358	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	0.070000	0.611940	
mm_166595.1	chr6	64734485	64734685	+	1	NA	NA	NA	5439	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal bHLH transcription factor 1	protein-coding	0.085000	0.661692	
mm_49434.1	chr6	29281043	29281243	+	1	NA	NA	NA	2	NM_001101486	245884	Mm.33683	NM_001101486	ENSMUSG00000079652	Fam71f2	AI507611|GARI	family with sequence similarity 71, member F2	protein-coding	0.010000	0.587065	
mm_105941.1	chr11	115187764	115187964	-	1	NA	NA	NA	377	NM_001033393	320534	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	0.030000	0.532338	82(TCTTTTAAATGG,+,0.00)
mm_91136.1	chr10	19632073	19632273	-	1	NA	NA	NA	10145	NM_178258	237310	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	0.015000	0.393035	
mm_144322.1	chr18	12743044	12743244	+	1	NA	NA	NA	1789	NM_027687	71132	Mm.179740	NM_027687	ENSMUSG00000024430	Cabyr	1700016C01Rik|4933421A18Rik|CBP86|FSP-2	calcium-binding tyrosine-(Y)-phosphorylation regulated (fibrousheathin 2)	protein-coding	0.020000	0.338308	-62(CGCTATTTATGG,-,0.00)
mm_173128.1	chrX	170008882	170009082	-	1	NA	NA	NA	-30065	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.025000	0.681592	
mm_124430.1	chr14	118236903	118237103	-	1	NA	NA	NA	27	NM_177753	223227	Mm.70950	NM_177753	ENSMUSG00000061517	Sox21	Sox25	SRY (sex determining region Y)-box 21	protein-coding	0.095000	0.696517	
mm_86412.1	chr10	3366266	3366466	+	1	NA	NA	NA	216	NM_133485	76142	Mm.308126	NM_133485	ENSMUSG00000040653	Ppp1r14c	6330514J04Rik|KEPI	protein phosphatase 1, regulatory (inhibitor) subunit 14c	protein-coding	0.075000	0.636816	
mm_155380.1	chrX	71812685	71812885	+	1	NA	NA	NA	-3295	NM_001290781	67048	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding	0.005000	0.547264	
mm_58147.1	chr6	142322849	142323049	-	1	NA	NA	NA	32	NM_130861	108096	Mm.206599	NM_130861	ENSMUSG00000063975	Slco1a5	Oatp-3|Oatp3|Slc21a7	solute carrier organic anion transporter family, member 1a5	protein-coding	0.020000	0.522388	
mm_86785.1	chr10	20171866	20172066	+	1	NA	NA	NA	23046	NM_001198635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.010000	0.532338	
mm_130872.1	chr15	102231806	102232006	-	1	NA	NA	NA	29	NM_013566	16421	Mm.58	NM_013566	ENSMUSG00000001281	Itgb7	Ly69	integrin beta 7	protein-coding	0.010000	0.631841	
mm_85498.1	chr9	106158021	106158221	-	1	NA	NA	NA	17	NM_001039586	235582	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	0.015000	0.522388	
mm_136537.1	chr16	97763324	97763524	-	1	NA	NA	NA	331	NM_023663	72388	Mm.35290	NM_023663	ENSMUSG00000005251	Ripk4	2310069J12Rik|AI552420|ANKK2|Ankrd3|DIk|PKK|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding	0.110000	0.716418	
mm_162806.1	chr10	77874476	77874676	+	1	NA	NA	NA	12601	NM_001101631	100041351	Mm.441672	NM_001101631		Gm3285	-	predicted gene 3285	protein-coding	0.010000	0.532338	66(ACCTATTAAGGC,-,0.00)
mm_108508.1	chr12	83987642	83987842	+	1	NA	NA	NA	-119	NM_134188	171210	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	0.025000	0.512438	
mm_39698.1	chr5	27160533	27160733	+	1	NA	NA	NA	-101302	NM_001136060	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.000000	0.527363	-33(AGCCTTAAAAGC,-,0.00),-32(GCCTTAAAAGCC,+,0.00),-31(CCTTAAAAGCCA,+,0.00)
mm_147952.1	chr18	66860403	66860603	-	1	NA	NA	NA	-16	NM_016977	17202	Mm.229447	NM_016977	ENSMUSG00000047259	Mc4r	Mc4-r	melanocortin 4 receptor	protein-coding	0.040000	0.577114	
mm_105847.1	chr11	113709425	113709625	-	1	NA	NA	NA	1	NM_026682	52670	Mm.229207	NM_026682	ENSMUSG00000018727	Cpsf4l	0610010C04Rik|1500000C01Rik|D11Ertd636e	cleavage and polyadenylation specific factor 4-like	protein-coding	0.050000	0.577114	-35(GGCTATATAGGA,-,0.00)
mm_98220.1	chr11	88047610	88047810	+	1	NA	NA	NA	337	NM_173374	110809	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	0.090000	0.646766	
mm_10480.1	chr2	14604162	14604362	+	1	NA	NA	NA	-44	NM_023116	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.100000	0.731343	
mm_36366.1	chr4	76435694	76435894	-	1	NA	NA	NA	-1157508	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.005000	0.462687	
mm_164561.1	chr17	17831548	17831748	+	1	NA	NA	NA	673	NM_001162909	75202	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0.000000	0.442786	
mm_112369.1	chr12	119182040	119182240	-	1	NA	NA	NA	56136	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.015000	0.407960	
mm_116049.1	chr13	27390744	27390944	-	1	NA	NA	NA	2	NM_025532	66392	Mm.5099	NM_025532	ENSMUSG00000069258	Prl2b1	2310047B08Rik|Ghd12|PLP-K|Plpk|Prlpk|mPLP-K	prolactin family 2, subfamily b, member 1	protein-coding	0.015000	0.457711	
mm_52122.1	chr6	97941082	97941282	+	1	NA	NA	NA	11365	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.040000	0.597015	
mm_117829.1	chr13	98262937	98263137	-	1	NA	NA	NA	-39	NM_001271392	68558	Mm.209642	NM_023472	ENSMUSG00000021661	Ankra2	1110004M18Rik|Ankra	ankyrin repeat, family A (RFXANK-like), 2	protein-coding	0.105000	0.656716	
mm_124900.1	chr15	10713582	10713782	+	1	NA	NA	NA	-142	NM_030690	75646	Mm.212395	NM_030690	ENSMUSG00000022246	Rai14	1700008J19Rik|1700020L11Rik|Ankycorbin|Norpeg|mKIAA1334	retinoic acid induced 14	protein-coding	0.005000	0.472637	
mm_30848.1	chr4	24966365	24966565	+	1	NA	NA	NA	-6954	NM_030733	81006	Mm.160412	NM_030733	ENSMUSG00000040372	Gpr63	PSP24beta|Psp24-2	G protein-coupled receptor 63	protein-coding	0.125000	0.721393	-58(GCCTTTAAGAGC,-,0.00),-57(CCTTTAAGAGCG,+,0.00)
mm_57978.1	chr6	135725474	135725674	-	1	NA	NA	NA	66661	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	0.005000	0.393035	
mm_40797.1	chr5	67608497	67608697	+	1	NA	NA	NA	714	NM_001033415	330096	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.110000	0.681592	
mm_105712.1	chr11	108343761	108343961	-	1	NA	NA	NA	27	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.140000	0.771144	
mm_35823.1	chr4	47056917	47057117	-	1	NA	NA	NA	289	NM_001024136	75691	Mm.86866	NM_001024136	ENSMUSG00000066191	Anks6	2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6|b2b1801.1Clo	ankyrin repeat and sterile alpha motif domain containing 6	protein-coding	0.125000	0.726368	
mm_1416.1	chr1	67159327	67159527	+	1	NA	NA	NA	36400	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.383085	
mm_64416.1	chr7	142538897	142539097	+	1	NA	NA	NA	5880	NM_011288	19935	Mm.12144	NM_011288	ENSMUSG00000037772	Mrpl23	L23mrp|Rpl23|Rpl23l	mitochondrial ribosomal protein L23	protein-coding	0.010000	0.522388	
mm_29562.1	chr3	116808088	116808288	-	1	NA	NA	NA	-22	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.120000	0.805970	
mm_42427.1	chr5	115332765	115332965	+	1	NA	NA	NA	5688	NR_036616	108014	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0.005000	0.348259	
mm_31528.1	chr4	55042714	55042914	+	1	NA	NA	NA	94869	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.010000	0.437811	-53(CTATATATAGTC,+,0.00)
mm_138516.1	chr17	35237807	35238007	+	1	NA	NA	NA	1311	NM_023179	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.020000	0.507463	
mm_51563.1	chr6	83544885	83545085	+	1	NA	NA	NA	-8734	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.000000	0.318408	
mm_140562.1	chr17	8272428	8272628	-	1	NA	NA	NA	-11285	NM_018819	55951	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	0.005000	0.497512	
mm_128265.1	chr15	36789494	36789694	-	1	NA	NA	NA	1338	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.000000	0.323383	
mm_127940.1	chr15	10589192	10589392	-	1	NA	NA	NA	-11001	NR_033541	100038608	Mm.450744	NR_033541		Gm10389	ENSMUSG00000072658	predicted gene 10389	ncRNA	0.035000	0.442786	
mm_9365.1	chr1	172199101	172199301	-	1	NA	NA	NA	7603	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.020000	0.512438	
mm_25357.1	chr3	107090790	107090990	+	1	NA	NA	NA	-10677	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.010000	0.502488	-43(GCACATAAAAGA,-,0.00)
mm_61650.1	chr7	80405436	80405636	+	1	NA	NA	NA	-100	NM_001081454	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.030000	0.517413	-85(CCCTTTATATGA,-,0.00)
mm_133571.1	chr16	91406118	91406318	+	1	NA	NA	NA	-17	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.090000	0.706468	
mm_117639.1	chr13	92483917	92484117	-	1	NA	NA	NA	14	NM_001163627	73942	Mm.85935	NM_001163627	ENSMUSG00000034334	Fam151b	4930405M20Rik	family with sequence similarity 151, member B	protein-coding	0.050000	0.611940	
mm_162335.1	chr1	44174581	44174781	+	1	NA	NA	NA	26937	NM_011729	22592	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	0.000000	0.442786	
mm_31487.1	chr4	52607110	52607310	+	1	NA	NA	NA	10936	NM_026652	68274	Mm.85045	NM_026652	ENSMUSG00000028314	Toporsl	4930547C10Rik	topoisomerase I binding, arginine/serine-rich like	protein-coding	0.010000	0.412935	
mm_129707.1	chr15	81729789	81729989	-	1	NA	NA	NA	30	NM_011241	19387	Mm.270975	NM_011241	ENSMUSG00000022391	Rangap1	C79654|Fug1|mKIAA1835	RAN GTPase activating protein 1	protein-coding	0.075000	0.601990	
mm_83613.1	chr9	48655710	48655910	-	1	NA	NA	NA	-50687	NM_010924	18113	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0.005000	0.407960	
mm_67826.1	chr7	98291038	98291238	-	1	NA	NA	NA	18389	NM_025408	66190	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca	alkaline ceramidase 3	protein-coding	0.000000	0.383085	
mm_67465.1	chr7	80406216	80406416	-	1	NA	NA	NA	-880	NM_001081454	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.015000	0.412935	
mm_125186.1	chr15	32254717	32254917	+	1	NA	NA	NA	10004	NM_009154	20356	Mm.260374	NM_009154	ENSMUSG00000022231	Sema5a	5930434A13|9130201M22Rik|AI464145|Semaf|semF	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A	protein-coding	0.000000	0.353234	
mm_20825.1	chr2	146197951	146198151	-	1	NA	NA	NA	-23946	NM_016889	53626	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	0.020000	0.457711	
mm_51102.1	chr6	67272078	67272278	+	1	NA	NA	NA	5199	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.020000	0.328358	
mm_117792.1	chr13	97190488	97190688	-	1	NA	NA	NA	7769	NM_010422	15212	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.030000	0.472637	
mm_40674.1	chr5	65536791	65536991	+	1	NA	NA	NA	-354	NM_016786	53323	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.065000	0.587065	
mm_14353.1	chr2	129608866	129609066	+	1	NA	NA	NA	15797	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.025000	0.537313	
mm_107590.1	chr12	47833887	47834087	+	1	NA	NA	NA	467475	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0.015000	0.402985	
mm_107584.1	chr12	44546671	44546871	+	1	NA	NA	NA	217886	NM_001146031	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.000000	0.288557	
mm_958.1	chr1	57845505	57845705	+	1	NA	NA	NA	34	NM_001164566	67198	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.020000	0.502488	
mm_46451.1	chr5	105116714	105116914	-	1	NA	NA	NA	-6522	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.005000	0.422886	
mm_30280.1	chr3	148917559	148917759	-	1	NA	NA	NA	36976	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.015000	0.353234	
mm_130996.1	chr15	103430310	103430510	-	1	NA	NA	NA	17	NM_028797	74174	Mm.325325	NM_028797	ENSMUSG00000022487	Gtsf1	1700006H03Rik|Cue110	gametocyte specific factor 1	protein-coding	0.060000	0.641791	
mm_56229.1	chr6	90659769	90659969	-	1	NA	NA	NA	40623	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.000000	0.417910	
mm_164681.1	chr17	47010385	47010585	-	1	NA	NA	NA	47	NM_146078	224826	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|ENSMUSG00000043296|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0.110000	0.686567	
mm_90714.1	chr10	4387950	4388150	-	1	NA	NA	NA	58	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.130000	0.726368	
mm_151292.1	chr19	55346035	55346235	+	1	NA	NA	NA	30078	NM_001293686	53611	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.010000	0.378109	
mm_49955.1	chr6	40628506	40628706	+	1	NA	NA	NA	-225	NM_001171003	232714	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding	0.015000	0.417910	
mm_168015.1	chrY	87116705	87116905	+	1	NA	NA	NA	-1587286	NM_001160131	100040911	Mm.457993	NM_001160131	ENSMUSG00000095650	Gm20854	-	predicted gene, 20854	protein-coding	0.010000	0.442786	
mm_158018.1	chrX	95964953	95965153	-	1	NA	NA	NA	-8079	NM_152822	76130	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	0.015000	0.477612	
mm_109797.1	chr12	3297201	3297401	-	1	NA	NA	NA	12668	NM_016676	19325	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.010000	0.398010	
mm_96748.1	chr11	69877140	69877340	+	1	NA	NA	NA	778	NM_001195710	100503361	Mm.340490	NM_001195710	ENSMUSG00000094845	Tmem95	432576	transmembrane protein 95	protein-coding	0.025000	0.552239	
mm_30199.1	chr3	144720038	144720238	-	1	NA	NA	NA	197	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.155000	0.796020	
mm_142854.1	chr17	51811971	51812171	-	1	NA	NA	NA	-17	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.025000	0.472637	
mm_156445.1	chrX	142681319	142681519	+	1	NA	NA	NA	19	NM_001199357	209497	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	0.095000	0.751244	
mm_106627.1	chr11	120866503	120866703	-	1	NA	NA	NA	-42056	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.005000	0.537313	
mm_131492.1	chr16	17276248	17276448	+	1	NA	NA	NA	48	NM_177473	224019	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	0.070000	0.666667	
mm_157033.1	chrX	7947647	7947847	-	1	NA	NA	NA	142	NM_001130416	15185	Mm.29854	NM_010413	ENSMUSG00000031161	Hdac6	Hd6|Hdac5|Sfc6|mHDA2	histone deacetylase 6	protein-coding	0.080000	0.646766	45(GTCTTTAAAGGT,-,0.00),46(TCTTTAAAGGTG,+,0.00)
mm_157887.1	chrX	75874428	75874628	-	1	NA	NA	NA	46	NM_145629	102866	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	0.070000	0.666667	
mm_130932.1	chr15	103193282	103193482	-	1	NA	NA	NA	21970	NM_007626	12419	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0.000000	0.442786	
mm_72044.1	chr8	71272618	71272818	+	1	NA	NA	NA	4	NM_001142323	17925	Mm.33779	NM_015742	ENSMUSG00000004677	Myo9b	-	myosin IXb	protein-coding	0.155000	0.761194	
mm_138221.1	chr17	34325539	34325739	+	1	NA	NA	NA	-36	NM_001033978	381091	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	0.000000	0.587065	
mm_153394.1	chr19	40406720	40406920	-	1	NA	NA	NA	-4510	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.035000	0.527363	
mm_32487.1	chr4	107953824	107954024	+	1	NA	NA	NA	-8	NR_131071	77223	Mm.401926	NR_131071	ENSMUSG00000086713	4930407G08Rik	-	RIKEN cDNA 4930407G08 gene	ncRNA	0.000000	0.492537	
mm_42705.1	chr5	120116439	120116639	+	1	NA	NA	NA	26	NM_028762	74111	Mm.41022	NM_028762	ENSMUSG00000029594	Rbm19	1200009A02Rik|AV302714|NPO	RNA binding motif protein 19	protein-coding	0.100000	0.621891	
mm_91411.1	chr10	31599698	31599898	-	1	NA	NA	NA	9927	NM_001146349	268291	Mm.295212	NM_001146349	ENSMUSG00000063760	Rnf217	AU016819|Ibrdc1	ring finger protein 217	protein-coding	0.010000	0.378109	
mm_107151.1	chr12	24498479	24498679	+	1	NA	NA	NA	-2	NM_020614	21340	Mm.39082	NM_020614	ENSMUSG00000059669	Taf1b	4930408G01Rik|A230108M10Rik|TAFI68|Tafi86|p63	TATA-box binding protein associated factor, RNA polymerase I, B	protein-coding	0.065000	0.611940	
mm_25111.1	chr3	101461981	101462181	+	1	NA	NA	NA	84956	NM_207205	78908	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	0.020000	0.477612	
mm_35037.1	chr4	4138093	4138293	-	1	NA	NA	NA	252	NM_001002927	18619	Mm.475097	NM_001002927	ENSMUSG00000045573	Penk	AI326464|ENK|PPA|Penk1	preproenkephalin	protein-coding	0.045000	0.616915	
mm_118061.1	chr13	102825074	102825274	-	1	NA	NA	NA	64919	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.005000	0.298507	-91(GTGTTTTTAAAG,-,0.00),-90(TGTTTTTAAAGG,-,0.00),-89(GTTTTTAAAGGA,+,0.00)
mm_131241.1	chr16	10489682	10489882	+	1	NA	NA	NA	1	NM_001243761	12265	Mm.249560	NM_007575	ENSMUSG00000022504	Ciita	C2ta|EG669998|Gm9475|Mhc2ta	class II transactivator	protein-coding	0.035000	0.592040	
mm_15015.1	chr2	152604329	152604529	+	1	NA	NA	NA	102	NM_001037247	266620	Mm.330669	NM_001037247	ENSMUSG00000044863	Defb36	BD-36|Defb123|mBD-36	defensin beta 36	protein-coding	0.070000	0.597015	
mm_163940.1	chr14	51145376	51145576	-	1	NA	NA	NA	1291	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.005000	0.512438	
mm_52348.1	chr6	111402297	111402497	+	1	NA	NA	NA	756799	NM_177328	108073	Mm.240881	NM_177328	ENSMUSG00000056755	Grm7	6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7	glutamate receptor, metabotropic 7	protein-coding	0.005000	0.353234	5(CTCTATATAAGA,-,0.00)
mm_12083.1	chr2	60071929	60072129	+	1	NA	NA	NA	53711	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.010000	0.507463	
mm_82829.1	chr9	31149714	31149914	-	1	NA	NA	NA	-18015	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.015000	0.373134	
mm_162950.1	chr11	3393268	3393468	-	1	NA	NA	NA	15870	NM_010718	16886	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.005000	0.462687	-34(TGGTATAAAAGA,-,0.00)
mm_65636.1	chr7	27761243	27761443	-	1	NA	NA	NA	-4330	NR_033484	100043229	Mm.458666	NR_033484	ENSMUSG00000109143	Gm10046	ENSMUSG00000058661	predicted gene 10046	ncRNA	0.015000	0.467662	
mm_26562.1	chr3	146500073	146500273	+	1	NA	NA	NA	337	NM_010318	14707	Mm.140804	NM_010318	ENSMUSG00000068523	Gng5	G(y)5	guanine nucleotide binding protein (G protein), gamma 5	protein-coding	0.125000	0.731343	
mm_24825.1	chr3	95651680	95651880	+	1	NA	NA	NA	-6941	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.020000	0.472637	
mm_131259.1	chr16	10791341	10791541	+	1	NA	NA	NA	-527	NM_013638	19120	Mm.291887	NM_013638	ENSMUSG00000050058	Prm3	BC061127|PX|Pxg	protamine 3	protein-coding	0.020000	0.527363	
mm_434.1	chr1	34579418	34579618	+	1	NA	NA	NA	-175	NM_213727	211383	Mm.330696	NM_213727	ENSMUSG00000045174	Amer3	9430069J07Rik|Fam123c	APC membrane recruitment 3	protein-coding	0.075000	0.636816	
mm_52308.1	chr6	108828464	108828664	+	1	NA	NA	NA	-77	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.130000	0.751244	-86(GCCTATAGAGCC,+,0.00),71(TTCCTTAAAGGG,-,0.00),73(CCTTAAAGGGGA,+,0.00)
mm_107770.1	chr12	59131347	59131547	+	1	NA	NA	NA	-6	NM_001165253	338320	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.155000	0.776119	
mm_49190.1	chr6	15185547	15185747	+	1	NA	NA	NA	141	NM_001286607	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.020000	0.452736	52(CTTTTTAGACTG,+,0.00)
mm_14000.1	chr2	121956558	121956758	+	1	NA	NA	NA	-566	NM_008545	17147	Mm.389349	NM_008545	ENSMUSG00000074881	Mageb3	Mage-b3|Mage-ps1|Mage-rs3|Smage3	melanoma antigen, family B, 3	protein-coding	0.080000	0.606965	
mm_89743.1	chr10	99107069	99107269	+	1	NA	NA	NA	-2	NM_027740	382406	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.115000	0.736318	
mm_8141.1	chr1	136280454	136280654	-	1	NA	NA	NA	-19681	NM_001101516	383563	Mm.40367	NM_001101516	ENSMUSG00000052759	Gpr25	Gm1300	G protein-coupled receptor 25	protein-coding	0.000000	0.497512	
mm_108704.1	chr12	86960277	86960477	+	1	NA	NA	NA	13034	NM_001289432	217732	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.045000	0.597015	
mm_157461.1	chrX	44789925	44790125	-	1	NA	NA	NA	136	NM_001190718	245404	Mm.55685	NM_178739	ENSMUSG00000045284	Dcaf12l1	9330180J20|A230038L21Rik|Decaf12l1|Wdr40b	DDB1 and CUL4 associated factor 12-like 1	protein-coding	0.110000	0.666667	
mm_112227.1	chr12	113430496	113430696	-	1	NA	NA	NA	-58969	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.015000	0.497512	
mm_30151.1	chr3	142604113	142604313	-	1	NA	NA	NA	9366	NM_010259	14468	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.000000	0.442786	
mm_70989.1	chr8	27296240	27296440	+	1	NA	NA	NA	295	NR_003107	732482	Mm.463248	NR_003107		Gm9731	-	Fam58a pseudogene	pseudo	0.035000	0.502488	
mm_112436.1	chr13	5155090	5155290	+	1	NA	NA	NA	-546026	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.005000	0.507463	-33(ACTTTAATACCG,+,0.00)
mm_17539.1	chr2	29773412	29773612	-	1	NA	NA	NA	11984	NM_001177392	433416	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	OTTMUSG00000012686	predicted gene 13547	protein-coding	0.010000	0.487562	
mm_49536.1	chr6	30175233	30175433	+	1	NA	NA	NA	-1208	NR_126541	101447999		NR_126540		Mirc35hg	-	microRNA cluster 35, host gene	ncRNA	0.035000	0.562189	
mm_73113.1	chr8	94749196	94749396	+	1	NA	NA	NA	3612	NM_009137	20299	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	0.000000	0.427861	
mm_131922.1	chr16	23320701	23320901	+	1	NA	NA	NA	30331	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.015000	0.492537	
mm_106190.1	chr11	116807675	116807875	-	1	NA	NA	NA	20271	NM_026280	67622	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0.010000	0.611940	
mm_87007.1	chr10	26822470	26822670	+	1	NA	NA	NA	50058	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.015000	0.497512	
mm_108275.1	chr12	78862006	78862206	+	1	NA	NA	NA	34	NM_026114	13665	Mm.196220	NM_026114	ENSMUSG00000021116	Eif2s1	0910001O23Rik|2410026C18Rik|35kDa|Eif2a|eIF2alpha	eukaryotic translation initiation factor 2, subunit 1 alpha	protein-coding	0.095000	0.641791	
mm_43919.1	chr5	144768048	144768248	+	1	NA	NA	NA	-644	NM_001081362	100683	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0.120000	0.746269	
mm_23595.1	chr3	64977492	64977692	+	1	NA	NA	NA	-131776	NM_010597	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.010000	0.507463	
mm_40224.1	chr5	37245844	37246044	+	1	NA	NA	NA	180	NM_007765	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.110000	0.711443	
mm_50217.1	chr6	42349512	42349712	+	1	NA	NA	NA	-216	NM_011777	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.065000	0.671642	
mm_92917.1	chr10	83648622	83648822	-	1	NA	NA	NA	-58	NM_145220	216190	Mm.282985	NM_145220	ENSMUSG00000020263	Appl2	Dip3b	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 2	protein-coding	0.115000	0.721393	
mm_149042.1	chr19	8820184	8820384	+	1	NA	NA	NA	883	NM_001081196	68693	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0.150000	0.731343	
mm_55578.1	chr6	71396199	71396399	-	1	NA	NA	NA	22872	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.005000	0.452736	
mm_157594.1	chrX	53209727	53209927	-	1	NA	NA	NA	59978	NM_030167	78755	Mm.28559	NM_030167	ENSMUSG00000036022	Fam122b	4632404H22Rik|AI256344|SPACIA2	family with sequence similarity 122, member B	protein-coding	0.005000	0.447761	
mm_129015.1	chr15	74923490	74923690	-	1	NA	NA	NA	-31461	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.020000	0.532338	
mm_172074.1	chr6	140738615	140738815	-	1	NA	NA	NA	111830	NM_001309436	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.035000	0.497512	
mm_124867.1	chr15	10177505	10177705	+	1	NA	NA	NA	367	NM_011169	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.035000	0.522388	
mm_138097.1	chr17	34048321	34048521	+	1	NA	NA	NA	9283	NM_001317722	12815	Mm.20230	NM_009926	ENSMUSG00000024330	Col11a2	-	collagen, type XI, alpha 2	protein-coding	0.005000	0.547264	
mm_165253.1	chr2	71980951	71981151	+	1	NA	NA	NA	-164	NM_001204167	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.090000	0.666667	
mm_54613.1	chr6	38354168	38354368	-	1	NA	NA	NA	335	NM_028864	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.135000	0.661692	
mm_168131.1	chr10	25454891	25455091	+	1	NA	NA	NA	46623	NM_013511	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.020000	0.407960	
mm_155479.1	chrX	73675348	73675548	+	1	NA	NA	NA	2315	NM_001142809	102857	Mm.274553	NM_133987	ENSMUSG00000019558	Slc6a8	AA589632|CRT|CRTR|CT1|CTR5|Creat	solute carrier family 6 (neurotransmitter transporter, creatine), member 8	protein-coding	0.010000	0.572139	
mm_128051.1	chr15	25766490	25766690	-	1	NA	NA	NA	-76708	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.005000	0.547264	-34(CCTTATATAAAG,+,0.00),-34(CCTTATATAAAG,-,0.00)
mm_6034.1	chr1	59551041	59551241	-	1	NA	NA	NA	34877	NM_001013771	381260	Mm.486706	NM_001013771	ENSMUSG00000047361	Gm973	AW554518	predicted gene 973	protein-coding	0.040000	0.537313	
mm_91975.1	chr10	61452693	61452893	-	1	NA	NA	NA	-124	NM_010124	13688	Mm.259516	NM_010124	ENSMUSG00000020091	Eif4ebp2	2810011I19Rik|4E-BP2|AA792569|BC010348|PHAS-II	eukaryotic translation initiation factor 4E binding protein 2	protein-coding	0.110000	0.701493	
mm_68072.1	chr7	101868954	101869154	-	1	NA	NA	NA	1734	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.015000	0.527363	
mm_167993.1	chrX	170010049	170010249	+	1	NA	NA	NA	-31232	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.035000	0.462687	
mm_32215.1	chr4	101647594	101647794	+	1	NA	NA	NA	-89	NM_175036	230514	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0.080000	0.661692	
mm_57104.1	chr6	122591072	122591272	-	1	NA	NA	NA	11272	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.040000	0.547264	
mm_160709.1	chr10	58813140	58813340	+	1	NA	NA	NA	-119	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding	0.145000	0.800995	
mm_55157.1	chr6	51581591	51581791	-	1	NA	NA	NA	37168	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.020000	0.557214	
mm_78939.1	chr9	45122352	45122552	+	1	NA	NA	NA	4576	NM_001014761	72821	Mm.229373	NM_001014761	ENSMUSG00000070304	Scn2b	2810451E09Rik|AI840361|Gm183	sodium channel, voltage-gated, type II, beta	protein-coding	0.025000	0.592040	
mm_616.1	chr1	40059250	40059450	+	1	NA	NA	NA	-25418	NM_010555	16178	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.010000	0.542289	-34(GCCCATAAAAGG,-,0.00),-32(CCATAAAAGGGG,+,0.00),37(CCCTTTAGGGAG,+,0.00)
mm_148781.1	chr19	6112810	6113010	+	1	NA	NA	NA	5676	NM_133678	66406	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.035000	0.606965	
mm_96424.1	chr11	67257012	67257212	+	1	NA	NA	NA	19300	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.020000	0.527363	
mm_57691.1	chr6	128521029	128521229	-	1	NA	NA	NA	5591	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.005000	0.338308	
mm_66672.1	chr7	45742199	45742399	-	1	NA	NA	NA	-16483	NM_027055	69363	Mm.45607	NM_027055	ENSMUSG00000070563	Spaca4	1700008E09Rik|AV043694|Samp14	sperm acrosome associated 4	protein-coding	0.035000	0.567164	
mm_26028.1	chr3	135439312	135439512	+	1	NA	NA	NA	653	NM_025356	66105	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.090000	0.681592	
mm_157138.1	chrX	9459227	9459427	-	1	NA	NA	NA	9997	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.393035	
mm_89071.1	chr10	82985310	82985510	+	1	NA	NA	NA	-87	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.100000	0.706468	
mm_161791.1	chr17	47385372	47385572	+	1	NA	NA	NA	79	NM_146079	107477	Mm.59151	NM_146079	ENSMUSG00000023979	Guca1b	BC018258|GCAP2	guanylate cyclase activator 1B	protein-coding	0.040000	0.597015	2(CTTTCTAAAAGC,-,0.00)
mm_113648.1	chr13	42301698	42301898	+	1	NA	NA	NA	322	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.045000	0.462687	
mm_143258.1	chr17	65580738	65580938	-	1	NA	NA	NA	32717	NM_013933	30960	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.010000	0.432836	
mm_41013.1	chr5	81021541	81021741	+	1	NA	NA	NA	48	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.055000	0.582090	
mm_75615.1	chr8	62892583	62892783	-	1	NA	NA	NA	-58549	NM_001252620	72902	Mm.334552	NM_023689	ENSMUSG00000054162	Spock3	2900045C01Rik|AI428471|mKIAA4039	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3	protein-coding	0.005000	0.368159	
mm_57781.1	chr6	129239730	129239930	-	1	NA	NA	NA	-1348	NR_040266	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.015000	0.422886	
mm_63693.1	chr7	130624464	130624664	+	1	NA	NA	NA	47080	NM_206856	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.030000	0.572139	
mm_27953.1	chr3	79825495	79825695	-	1	NA	NA	NA	17067	NM_027495	70652	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.030000	0.527363	
mm_124267.1	chr14	102981360	102981560	-	1	NA	NA	NA	1172	NR_039592	100628599		NR_039592	ENSMUSG00000092901	Mir5130	mir-5130|mmu-mir-5130|mu-mir-5130	microRNA 5130	ncRNA	0.070000	0.641791	
mm_97467.1	chr11	78266844	78267044	+	1	NA	NA	NA	5190	NM_001002004	72503	Mm.237103	NM_001002004	ENSMUSG00000010277	2610507B11Rik	AU022687|D11Bhm178e|D11Bhm179e|E1|Kiaa0100|mKIAA0100	RIKEN cDNA 2610507B11 gene	protein-coding	0.015000	0.487562	
mm_115175.1	chr13	108214322	108214522	+	1	NA	NA	NA	18	NM_029001	74559	Mm.286127	NM_029001	ENSMUSG00000021696	Elovl7	9130013K24Rik|AI840082	ELOVL family member 7, elongation of long chain fatty acids (yeast)	protein-coding	0.145000	0.820896	
mm_47829.1	chr5	134270616	134270816	-	1	NA	NA	NA	-41091	NR_104383	17969	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.010000	0.472637	
mm_125777.1	chr15	74636774	74636974	+	1	NA	NA	NA	-556	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.030000	0.557214	
mm_119003.1	chr14	29018116	29018316	+	1	NA	NA	NA	8	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding	0.010000	0.462687	
mm_154511.1	chrM	12145	12345	-	1	NA	NA	NA	NA	NA									0.030000	0.388060	
mm_26966.1	chr3	23939359	23939559	-	1	NA	NA	NA	844547	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.000000	0.462687	-34(TTCTTTAAAAGG,-,0.00),-33(TCTTTAAAAGGG,+,0.00),-32(CTTTAAAAGGGG,+,0.00)
mm_92678.1	chr10	80577165	80577365	-	1	NA	NA	NA	31	NM_078477	118445	Mm.41513	NM_078477	ENSMUSG00000035397	Klf16	AI843742|BTEB4|DRRF	Kruppel-like factor 16	protein-coding	0.145000	0.751244	
mm_117719.1	chr13	95444606	95444806	-	1	NA	NA	NA	125	NM_198408	12919	Mm.316614	NM_198408	ENSMUSG00000021680	Crhbp	CRH-BP	corticotropin releasing hormone binding protein	protein-coding	0.030000	0.537313	-98(CTCTATAAAAGA,-,0.00)
mm_130867.1	chr15	102204148	102204348	-	1	NA	NA	NA	-323	NM_001289690	68744	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0.075000	0.646766	
mm_139970.1	chr17	71769576	71769776	+	1	NA	NA	NA	-15	NR_073185	78785	Mm.196382	NM_030179	ENSMUSG00000024059	Clip4	1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2	CAP-GLY domain containing linker protein family, member 4	protein-coding	0.005000	0.507463	
mm_71892.1	chr8	69832672	69832872	+	1	NA	NA	NA	68	NM_001024954	80720	Mm.210823	NM_030555	ENSMUSG00000031860	Pbx4	2410015M21Rik|AI429113|AW045266	pre B cell leukemia homeobox 4	protein-coding	0.095000	0.711443	
mm_34167.1	chr4	139907941	139908141	+	1	NA	NA	NA	25033	NR_045160	71235	Mm.61253	NR_045159	ENSMUSG00000085928	4933427I22Rik	-	RIKEN cDNA 4933427I22 gene	ncRNA	0.035000	0.567164	
mm_154357.1	chrM	6112	6312	+	1	NA	NA	NA	NA	NA									0.030000	0.398010	-80(GGCTATATAGGA,-,0.00)
mm_72810.1	chr8	87473289	87473489	+	1	NA	NA	NA	273	NR_125722	100040294	Mm.213632	NR_033430	ENSMUSG00000097248	Gm2694	C230036H16Rik|linc1582	predicted gene 2694	ncRNA	0.070000	0.577114	
mm_153390.1	chr19	40382766	40382966	-	1	NA	NA	NA	19444	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.030000	0.502488	
mm_85115.1	chr9	95407190	95407390	-	1	NA	NA	NA	-20	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.145000	0.771144	
mm_95015.1	chr11	31965508	31965708	+	1	NA	NA	NA	-25	NM_026262	67592	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	0.050000	0.686567	
mm_149313.1	chr19	10783428	10783628	+	1	NA	NA	NA	42581	NR_027805	403202	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0.020000	0.512438	
mm_21448.1	chr2	160619859	160620059	-	1	NA	NA	NA	-25938	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.030000	0.572139	
mm_154980.1	chrX	37827293	37827493	+	1	NA	NA	NA	338	NM_008955	19202	Mm.10105	NM_008955	ENSMUSG00000006200	Rhox6	AV213605|AW548842|Psx1	reproductive homeobox 6	protein-coding	0.030000	0.552239	
mm_66255.1	chr7	35647010	35647210	-	1	NA	NA	NA	372	NM_019746	56330	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0.100000	0.701493	
mm_49339.1	chr6	21384558	21384758	+	1	NA	NA	NA	168549	NM_019697	16508	Mm.425316	NM_019697	ENSMUSG00000060882	Kcnd2	AI839615|AW555701|Kv4.2|R75121|mKIAA1044	potassium voltage-gated channel, Shal-related family, member 2	protein-coding	0.005000	0.273632	22(CACCATATAAGC,-,0.00)
mm_15662.1	chr2	163323174	163323374	+	1	NA	NA	NA	74699	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	0.005000	0.343284	
mm_147239.1	chr18	38296948	38297148	-	1	NA	NA	NA	243	NM_001164621	56736	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	0.100000	0.686567	
mm_89667.1	chr10	97503709	97503909	+	1	NA	NA	NA	21478	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.020000	0.388060	
mm_90420.1	chr10	127476484	127476684	+	1	NA	NA	NA	-25133	NM_177707	237611	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0.010000	0.552239	
mm_1268.1	chr1	63200517	63200717	+	1	NA	NA	NA	259	NM_001285936	73884	Mm.86986	NM_028673	ENSMUSG00000027520	Zdbf2	4930431J08Rik|9330107J05Rik	zinc finger, DBF-type containing 2	protein-coding	0.040000	0.467662	
mm_152806.1	chr19	21942324	21942524	-	1	NA	NA	NA	164084	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.020000	0.447761	
mm_171005.1	chr2	80196154	80196354	+	1	NA	NA	NA	-66842	NM_001159582	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.035000	0.507463	-33(GGGTATTTAAGG,-,0.00)
mm_24558.1	chr3	93443521	93443721	+	1	NA	NA	NA	1291	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.070000	0.601990	
mm_85591.1	chr9	107334219	107334419	-	1	NA	NA	NA	4031	NM_133984	69536	Mm.259467	NM_133984	ENSMUSG00000032579	Hemk1	2310008M14Rik|AW049265	HemK methyltransferase family member 1	protein-coding	0.020000	0.572139	
mm_94992.1	chr11	31871428	31871628	+	1	NA	NA	NA	588	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.035000	0.587065	
mm_13398.1	chr2	103970159	103970359	+	1	NA	NA	NA	-28	NM_008505	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.160000	0.810945	
mm_36886.1	chr4	107253366	107253566	-	1	NA	NA	NA	67	NM_029985	77809	Mm.29681	NM_029985	ENSMUSG00000028617	Lrrc42	A930011F22Rik|AA536996	leucine rich repeat containing 42	protein-coding	0.080000	0.721393	
mm_37970.1	chr4	133498423	133498623	-	1	NA	NA	NA	27	NM_001081156	69539	Mm.151594	NM_001081156	ENSMUSG00000056596	Trnp1	2300002D11Rik|Trnp	TMF1-regulated nuclear protein 1	protein-coding	0.100000	0.701493	
mm_121919.1	chr14	23298691	23298891	-	1	NA	NA	NA	-204220	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA	0.010000	0.373134	
mm_150587.1	chr19	40660585	40660785	+	1	NA	NA	NA	915	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.035000	0.537313	
mm_160516.1	chr9	22113854	22114054	-	1	NA	NA	NA	59	NR_106052	102466221		NR_106052	ENSMUSG00000098646	Mir7084	Gm27978|mmu-mir-7084	microRNA 7084	ncRNA	0.015000	0.562189	
mm_15943.1	chr2	165874904	165875104	+	1	NA	NA	NA	3433	NM_001291158	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.020000	0.592040	
mm_155336.1	chrX	66652941	66653141	+	1	NA	NA	NA	-118	NM_198863	245450	Mm.336081	NM_198863	ENSMUSG00000036790	Slitrk2	A930040J07	SLIT and NTRK-like family, member 2	protein-coding	0.065000	0.611940	
mm_130267.1	chr15	96689833	96690033	-	1	NA	NA	NA	9765	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.020000	0.368159	
mm_146578.1	chr18	7373638	7373838	-	1	NA	NA	NA	-75837	NM_001081393	74934	Mm.107918	NM_001081393	ENSMUSG00000061802	Armc4	4930463I21Rik|b2b227.1Clo|b2b643Clo	armadillo repeat containing 4	protein-coding	0.005000	0.268657	-54(TTCCCTTAAAGC,-,0.00)
mm_116558.1	chr13	46727729	46727929	-	1	NA	NA	NA	20	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.165000	0.796020	
mm_131329.1	chr16	13119153	13119353	+	1	NA	NA	NA	9517	NM_015769	50505	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	0.005000	0.467662	
mm_26727.1	chr3	4656903	4657103	-	1	NA	NA	NA	-141705	NR_045272	100503859	Mm.75172	NR_045272	ENSMUSG00000098659	1110015O18Rik	-	RIKEN cDNA 1110015O18 gene	ncRNA	0.000000	0.383085	
mm_34124.1	chr4	139256992	139257192	+	1	NA	NA	NA	53608	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.030000	0.537313	
mm_78864.1	chr9	44398316	44398516	+	1	NA	NA	NA	240	NM_008063	14385	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0.020000	0.532338	-97(GGCTATAAAGAG,-,0.00)
mm_159072.1	chr2	25423160	25423360	+	1	NA	NA	NA	18	NM_001289456	14347	Mm.1203	NM_013524	ENSMUSG00000036587	Fut7	AI853193|FTVII|Fuc-TVII|FucT-VII	fucosyltransferase 7	protein-coding	0.025000	0.582090	
mm_95605.1	chr11	53370842	53371042	+	1	NA	NA	NA	20175	NM_033565	93736	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.000000	0.328358	
mm_67222.1	chr7	74542853	74543053	-	1	NA	NA	NA	11827	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.000000	0.288557	
mm_32175.1	chr4	100776549	100776749	+	1	NA	NA	NA	-30	NM_198037	320508	Mm.151962	NM_198037	ENSMUSG00000028532	Cachd1	1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573	cache domain containing 1	protein-coding	0.100000	0.686567	
mm_100409.1	chr11	119422993	119423193	+	1	NA	NA	NA	32621	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.025000	0.547264	
mm_19044.1	chr2	77147051	77147251	-	1	NA	NA	NA	23484	NM_001025576	545428	Mm.26579	NM_001025576	ENSMUSG00000044033	Ccdc141	2610301F02Rik|CAMDI|ENSMUSG00000075261	coiled-coil domain containing 141	protein-coding	0.000000	0.432836	
mm_18723.1	chr2	72937969	72938169	-	1	NA	NA	NA	41212	NM_001098425	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.000000	0.328358	
mm_79313.1	chr9	52067301	52067501	+	1	NA	NA	NA	-18696	NR_023357	629557	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.000000	0.373134	
mm_78489.1	chr9	32700184	32700384	+	1	NA	NA	NA	4242	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.005000	0.452736	
mm_164368.1	chr16	24025640	24025840	+	1	NA	NA	NA	-37128	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.015000	0.492537	
mm_70958.1	chr8	26978682	26978882	+	1	NA	NA	NA	1446	NM_001110508	353310	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.120000	0.711443	
mm_96700.1	chr11	69633648	69633848	+	1	NA	NA	NA	777	NM_011814	23879	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0.020000	0.398010	
mm_104612.1	chr11	97239615	97239815	-	1	NA	NA	NA	40861	NM_008942	19155	Mm.29824	NM_008942	ENSMUSG00000001441	Npepps	AAP-S|MP100|Psa|R74825|goku	aminopeptidase puromycin sensitive	protein-coding	0.000000	0.363184	
mm_6863.1	chr1	84278327	84278527	-	1	NA	NA	NA	6218	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.010000	0.378109	
mm_72707.1	chr8	84980258	84980458	+	1	NA	NA	NA	-1610	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.090000	0.781095	
mm_118133.1	chr13	104816797	104816997	-	1	NA	NA	NA	56	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.045000	0.527363	
mm_112278.1	chr12	114358163	114358363	-	1	NA	NA	NA	111203	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.005000	0.373134	
mm_163488.1	chr12	109453529	109453729	+	1	NA	NA	NA	174	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.100000	0.711443	
mm_38454.1	chr4	140519734	140519934	-	1	NA	NA	NA	128922	NM_001112723	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.005000	0.477612	
mm_111557.1	chr12	101073442	101073642	-	1	NA	NA	NA	-8909	NR_038048	319760	Mm.440198	NM_176997	ENSMUSG00000097121	D130020L05Rik	9430007L23Rik	RIKEN cDNA D130020L05 gene	ncRNA	0.025000	0.437811	
mm_127151.1	chr15	98567907	98568107	+	1	NA	NA	NA	-371	NM_009833	12455	Mm.29941	NM_009833	ENSMUSG00000011960	Ccnt1	2810478G24Rik|AI115585|CycT1	cyclin T1	protein-coding	0.100000	0.601990	-70(GTTCTTTAAAGG,-,0.00),-68(TCTTTAAAGGTC,+,0.00)
mm_89577.1	chr10	95634413	95634613	+	1	NA	NA	NA	-70346	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.030000	0.532338	
mm_91987.1	chr10	61874772	61874972	-	1	NA	NA	NA	-91008	NM_207000	404634	Mm.272870	NM_207000	ENSMUSG00000020086	H2afy2	macroH2A2	H2A histone family, member Y2	protein-coding	0.005000	0.522388	
mm_39276.1	chr5	3845099	3845299	+	1	NA	NA	NA	26	NM_172879	242838	Mm.482273	NM_172879	ENSMUSG00000040367	Lrrd1	4932412H11Rik	leucine rich repeats and death domain containing 1	protein-coding	0.080000	0.626866	
mm_163145.1	chr11	81675867	81676067	+	1	NA	NA	NA	-102428	NM_001033765	237880	Mm.435528	NM_001033765		1700071K01Rik	-	RIKEN cDNA 1700071K01 gene	protein-coding	0.005000	0.368159	
mm_86567.1	chr10	11323322	11323522	+	1	NA	NA	NA	-20023	NM_010146	13853	Mm.89946	NM_010146	ENSMUSG00000055493	Epm2a	TG-B|Tg(TcraK,TcrbK)TG-BFlv	epilepsy, progressive myoclonic epilepsy, type 2 gene alpha	protein-coding	0.005000	0.482587	
mm_3520.1	chr1	150107427	150107627	+	1	NA	NA	NA	7496	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.278607	
mm_83443.1	chr9	45002521	45002721	-	1	NA	NA	NA	6969	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.005000	0.432836	
mm_126309.1	chr15	79659091	79659291	+	1	NA	NA	NA	-36	NM_028634	73739	Mm.294441	NM_028634	ENSMUSG00000022428	Cby1	1110014P06Rik|CBY|PGEA14|Pgea1|arb1	chibby family member 1, beta catenin antagonist	protein-coding	0.110000	0.671642	
mm_36053.1	chr4	57338848	57339048	-	1	NA	NA	NA	25344	NR_038179	73349	Mm.393774	NR_038178		1700042G15Rik	-	RIKEN cDNA 1700042G15 gene	ncRNA	0.055000	0.557214	
mm_70455.1	chr8	11798625	11798825	+	1	NA	NA	NA	40395	NM_001113518	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.005000	0.582090	
mm_105717.1	chr11	108344050	108344250	-	1	NA	NA	NA	-262	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.070000	0.696517	
mm_25631.1	chr3	119242177	119242377	+	1	NA	NA	NA	541111	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.000000	0.358209	
mm_54747.1	chr6	41032922	41033122	-	1	NA	NA	NA	2487	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.015000	0.497512	
mm_143338.1	chr17	66495356	66495556	-	1	NA	NA	NA	24214	NM_024448	19328	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0.030000	0.407960	
mm_70050.1	chr7	142578007	142578207	-	1	NA	NA	NA	39	NR_130974	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.045000	0.651741	
mm_45523.1	chr5	72627840	72628040	-	1	NA	NA	NA	14812	NM_007723	12788	Mm.436652	NM_007723	ENSMUSG00000067220	Cnga1	Cncg	cyclic nucleotide gated channel alpha 1	protein-coding	0.035000	0.552239	
mm_99914.1	chr11	110145520	110145720	+	1	NA	NA	NA	22533	NM_147220	217262	Mm.291459	NM_147220	ENSMUSG00000041797	Abca9	D630040K07Rik	ATP-binding cassette, sub-family A (ABC1), member 9	protein-coding	0.040000	0.477612	26(GGTTATAAATGG,-,0.00)
mm_97215.1	chr11	75630723	75630923	+	1	NA	NA	NA	-197	NM_008916	19062	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.105000	0.706468	
mm_22958.1	chr3	32414769	32414969	+	1	NA	NA	NA	-21282	NM_008839	18706	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	protein-coding	0.000000	0.303483	
mm_81121.1	chr9	106463079	106463279	+	1	NA	NA	NA	2761	NM_001159652	436090	Mm.482905	NM_001159652	ENSMUSG00000091735	Gpr62	4933402E03Rik	G protein-coupled receptor 62	protein-coding	0.025000	0.636816	
mm_105068.1	chr11	100724186	100724386	-	1	NA	NA	NA	10436	NM_029307	75482	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.005000	0.442786	46(GCTCTTAAGGAC,+,0.00)
mm_144499.1	chr18	24470706	24470906	+	1	NA	NA	NA	-65	NM_026529	68046	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	0.090000	0.547264	
mm_95379.1	chr11	49096621	49096821	+	1	NA	NA	NA	9704	NM_008330	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.005000	0.437811	
mm_150707.1	chr19	42524765	42524965	+	1	NA	NA	NA	6060	NM_177464	52013	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	0.005000	0.298507	
mm_84010.1	chr9	57645098	57645298	-	1	NA	NA	NA	455	NM_007783	12988	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.085000	0.691542	
mm_161603.1	chr16	38455276	38455476	+	1	NA	NA	NA	-2687	NM_007414	11544	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.010000	0.487562	
mm_128957.1	chr15	74799447	74799647	-	1	NA	NA	NA	421	NM_029627	76486	Mm.273319	NM_029627	ENSMUSG00000044678	Ly6k	2410015A16Rik|3110035B01Rik|mLy-6K	lymphocyte antigen 6 complex, locus K	protein-coding	0.050000	0.621891	
mm_23049.1	chr3	35113410	35113610	+	1	NA	NA	NA	-190859	NR_105799	102466155		NR_105799	ENSMUSG00000098862	Mir6378	Gm27706|mmu-mir-6378	microRNA 6378	ncRNA	0.015000	0.582090	
mm_125469.1	chr15	53639011	53639211	+	1	NA	NA	NA	263325	NM_177225	320679	Mm.442455	NM_177225	ENSMUSG00000058656	Samd12	A830094I09Rik	sterile alpha motif domain containing 12	protein-coding	0.010000	0.467662	
mm_59108.1	chr7	19809483	19809683	+	1	NA	NA	NA	-12774	NM_023224	80794	Mm.81698	NM_023224	ENSMUSG00000040525	Cblc	2310076I21Rik|2310079L19Rik|Cbl3	Casitas B-lineage lymphoma c	protein-coding	0.090000	0.636816	
mm_74643.1	chr8	13287735	13287935	-	1	NA	NA	NA	-178	NM_172282	234076	Mm.219813	NM_172282	ENSMUSG00000038497	Tmco3	B230339H12Rik|C87304	transmembrane and coiled-coil domains 3	protein-coding	0.110000	0.666667	
mm_169049.1	chr13	17803191	17803391	-	1	NA	NA	NA	1806	NM_001081058	69562	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.040000	0.562189	
mm_143202.1	chr17	62783961	62784161	-	1	NA	NA	NA	97256	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.020000	0.457711	47(CCTTTTAAATTA,+,0.00)
mm_112692.1	chr13	17694526	17694726	+	1	NA	NA	NA	139	NM_138654	192136	Mm.364180	NM_138654	ENSMUSG00000055137	Sugct	5033411D12Rik|D17907	succinyl-CoA glutarate-CoA transferase	protein-coding	0.085000	0.711443	
mm_147917.1	chr18	65586966	65587166	-	1	NA	NA	NA	6836	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.010000	0.472637	
mm_160495.1	chr9	3379179	3379379	+	1	NA	NA	NA	-24806	NM_027545	244672	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	0.035000	0.557214	
mm_109845.1	chr12	4593619	4593819	-	1	NA	NA	NA	711	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.050000	0.492537	
mm_7323.1	chr1	100180283	100180483	-	1	NA	NA	NA	407618	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0.005000	0.393035	
mm_92035.1	chr10	62486678	62486878	-	1	NA	NA	NA	27	NM_133672	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.085000	0.706468	
mm_147268.1	chr18	38929039	38929239	-	1	NA	NA	NA	-10440	NM_010197	14164	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0.025000	0.587065	
mm_140067.1	chr17	74841139	74841339	+	1	NA	NA	NA	123489	NM_152817	74196	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0.010000	0.432836	
mm_9577.1	chr1	174024319	174024519	-	1	NA	NA	NA	7336	NM_172648	226695	Mm.425061	NM_172648	ENSMUSG00000054203	Ifi205	D3|D3cDNA|Ifi205a	interferon activated gene 205	protein-coding	0.005000	0.283582	
mm_147054.1	chr18	34940142	34940342	-	1	NA	NA	NA	-8239	NM_144866	225363	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.015000	0.472637	
mm_3180.1	chr1	135766030	135766230	+	1	NA	NA	NA	45	NM_013750	27280	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	0.140000	0.791045	
mm_74896.1	chr8	25158052	25158252	-	1	NA	NA	NA	1081	NR_106187	102467006		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA	0.005000	0.437811	
mm_155707.1	chrX	95968804	95969004	+	1	NA	NA	NA	-11930	NM_152822	76130	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	0.010000	0.527363	-35(CACTATAAAAGG,-,0.00)
mm_85069.1	chr9	91130294	91130494	-	1	NA	NA	NA	235405	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.030000	0.427861	
mm_118518.1	chr14	14686718	14686918	+	1	NA	NA	NA	-16207	NM_001033270	218756	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.015000	0.417910	
mm_110245.1	chr12	31337159	31337359	-	1	NA	NA	NA	14212	NM_007861	13382	Mm.3131	NM_007861	ENSMUSG00000020664	Dld	-	dihydrolipoamide dehydrogenase	protein-coding	0.010000	0.412935	8(TCTCATATAGCC,+,0.00)
mm_87348.1	chr10	43579834	43580034	+	1	NA	NA	NA	765	NM_009846	12484	Mm.29742	NM_009846	ENSMUSG00000047139	Cd24a	Cd24|HSA|Ly-52|nectadrin	CD24a antigen	protein-coding	0.060000	0.587065	
mm_161944.1	chr19	4185375	4185575	-	1	NA	NA	NA	5572	NM_178650	108995	Mm.288312	NM_178650	ENSMUSG00000040247	Tbc1d10c	1810062O14Rik|AI428527	TBC1 domain family, member 10c	protein-coding	0.025000	0.621891	
mm_118487.1	chr14	12284086	12284286	+	1	NA	NA	NA	-17	NM_001284384	218734	Mm.44068	NM_146051	ENSMUSG00000033111	3830406C13Rik	-	RIKEN cDNA 3830406C13 gene	protein-coding	0.075000	0.621891	
mm_163492.1	chr12	109568089	109568289	+	1	NA	NA	NA	-3801	NR_030438	751547		NR_030438	ENSMUSG00000076316	Mir673	Mirn673|mir-673|mmu-mir-673	microRNA 673	ncRNA	0.000000	0.427861	
mm_16448.1	chr2	180456201	180456401	+	1	NA	NA	NA	-4677	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.095000	0.691542	
mm_51651.1	chr6	86028758	86028958	+	1	NA	NA	NA	177	NM_001271860	11519	Mm.104155	NM_013458	ENSMUSG00000030000	Add2	2900072M03Rik|add97	adducin 2 (beta)	protein-coding	0.085000	0.641791	
mm_133058.1	chr16	58436490	58436690	+	1	NA	NA	NA	28055	NM_028523	73379	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.000000	0.363184	78(GTATATAAAAAG,-,0.00)
mm_102481.1	chr11	60115132	60115332	-	1	NA	NA	NA	10219	NM_009021	19377	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.115000	0.746269	
mm_18671.1	chr2	70825814	70826014	-	1	NA	NA	NA	-434	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.185000	0.850746	
mm_77676.1	chr8	124949169	124949369	-	1	NA	NA	NA	-15	NM_053207	112405	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	0.195000	0.850746	
mm_54508.1	chr6	35511268	35511468	-	1	NA	NA	NA	28520	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.010000	0.343284	-18(TCTTATAAAGAG,+,0.00)
mm_98655.1	chr11	96271048	96271248	+	1	NA	NA	NA	-182	NM_008270	15417	Mm.258271	NM_008270	ENSMUSG00000020875	Hoxb9	Hox-2.5	homeobox B9	protein-coding	0.070000	0.631841	
mm_90465.1	chr10	127776251	127776451	+	1	NA	NA	NA	-54	NM_153133	103142	Mm.235814	NM_153133	ENSMUSG00000056148	Rdh9	AI121090|Crad3	retinol dehydrogenase 9	protein-coding	0.010000	0.472637	
mm_96860.1	chr11	70092576	70092776	+	1	NA	NA	NA	32	NM_001313927	11890	Mm.1357	NM_007493	ENSMUSG00000040963	Asgr2	ASGPR2|Asgr|Asgr-2|HL-2	asialoglycoprotein receptor 2	protein-coding	0.010000	0.562189	
mm_93154.1	chr10	93083269	93083469	-	1	NA	NA	NA	-1773	NM_001347060	380654	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	0.040000	0.452736	
mm_32596.1	chr4	111750559	111750759	+	1	NA	NA	NA	30649	NM_026470	67946	Mm.275526	NM_026470	ENSMUSG00000034401	Spata6	1700062C23Rik|AI790763|Hash|KRP|Mash	spermatogenesis associated 6	protein-coding	0.000000	0.363184	
mm_172957.1	chr9	88482053	88482253	-	1	NA	NA	NA	244	NM_019666	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.145000	0.721393	
mm_130800.1	chr15	101707336	101707536	-	1	NA	NA	NA	5455	NM_027011	110308	Mm.451847	NM_027011	ENSMUSG00000061527	Krt5	3300001P10Rik|AW146334|CK5|K5|Krt2-5|Tfip8	keratin 5	protein-coding	0.030000	0.592040	
mm_126326.1	chr15	79883417	79883617	+	1	NA	NA	NA	-8891	NM_001160415	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.100000	0.711443	
mm_104591.1	chr11	97041299	97041499	-	1	NA	NA	NA	-30	NM_027026	69297	Mm.250465	NM_027026	ENSMUSG00000020878	Lrrc46	1700006D24Rik	leucine rich repeat containing 46	protein-coding	0.075000	0.601990	82(GGCCAGTAAAGC,-,0.00)
mm_80473.1	chr9	78175810	78176010	+	1	NA	NA	NA	-4	NR_040401	320295	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	0.075000	0.562189	
mm_126745.1	chr15	85735536	85735736	+	1	NA	NA	NA	72	NM_001113418	19013	Mm.212789	NM_011144	ENSMUSG00000022383	Ppara	4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar	peroxisome proliferator activated receptor alpha	protein-coding	0.090000	0.761194	
mm_153682.1	chr19	44396596	44396796	-	1	NA	NA	NA	11013	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.005000	0.502488	
mm_104319.1	chr11	93955624	93955824	-	1	NA	NA	NA	59	NM_001077529	18103	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	0.075000	0.661692	
mm_40536.1	chr5	57959019	57959219	+	1	NA	NA	NA	241038	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.010000	0.383085	
mm_137663.1	chr17	28692185	28692385	+	1	NA	NA	NA	-283	NM_001168513	26416	Mm.311337	NM_011951	ENSMUSG00000053436	Mapk14	CSBP2|Crk1|Csbp1|Mxi2|PRKM14|PRKM15|p38|p38-alpha|p38MAPK|p38a|p38alpha	mitogen-activated protein kinase 14	protein-coding	0.070000	0.592040	
mm_131441.1	chr16	16072695	16072895	+	1	NA	NA	NA	74056	NM_146068	224008	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0.010000	0.487562	
mm_157596.1	chrX	53240004	53240204	-	1	NA	NA	NA	29701	NM_030167	78755	Mm.28559	NM_030167	ENSMUSG00000036022	Fam122b	4632404H22Rik|AI256344|SPACIA2	family with sequence similarity 122, member B	protein-coding	0.005000	0.422886	
mm_73195.1	chr8	95534032	95534232	+	1	NA	NA	NA	32	NM_172914	244608	Mm.248902	NM_172914	ENSMUSG00000036598	Ccdc113	4933409I22|BC060957	coiled-coil domain containing 113	protein-coding	0.060000	0.606965	-64(CCCTATAAACAG,+,0.00)
mm_76133.1	chr8	80880421	80880621	-	1	NA	NA	NA	-2	NM_001301298	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.070000	0.661692	
mm_153870.1	chr19	46701264	46701464	-	1	NA	NA	NA	-6079	NM_020577	57344	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	0.035000	0.522388	-83(CCTTTAATGCAT,+,0.00)
mm_128853.1	chr15	71954290	71954490	-	1	NA	NA	NA	79837	NM_027174	69700	Mm.322500	NM_027174	ENSMUSG00000079022	Col22a1	2310067L16Rik|C80743	collagen, type XXII, alpha 1	protein-coding	0.015000	0.532338	
mm_100498.1	chr11	120479950	120480150	+	1	NA	NA	NA	-4619	NM_027204	56282	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	0.010000	0.592040	
mm_142648.1	chr17	47507896	47508096	-	1	NA	NA	NA	2945	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.015000	0.462687	
mm_170229.1	chr17	82153457	82153657	-	1	NA	NA	NA	-415170	NM_011406	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.000000	0.457711	76(CCCTTTATAAGT,-,0.00)
mm_36870.1	chr4	107134949	107135149	-	1	NA	NA	NA	38158	NM_172873	242603	Mm.257231	NM_172873	ENSMUSG00000047636	Cdcp2	D030010E02Rik	CUB domain containing protein 2	protein-coding	0.010000	0.323383	
mm_109542.1	chr12	111583564	111583764	+	1	NA	NA	NA	9154	NM_022801	17169	Mm.260504	NM_021516	ENSMUSG00000007411	Mark3	1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|MPK10	MAP/microtubule affinity regulating kinase 3	protein-coding	0.020000	0.487562	
mm_29155.1	chr3	106014517	106014717	-	1	NA	NA	NA	29	NM_001200028	100503311	Mm.386825	NM_029604	ENSMUSG00000010136	Pifo	1700027A23Rik	primary cilia formation	protein-coding	0.005000	0.437811	
mm_23446.1	chr3	59898400	59898600	+	1	NA	NA	NA	-26714	NM_177661	229333	Mm.75765	NM_177661	ENSMUSG00000036951	C130079G13Rik	-	RIKEN cDNA C130079G13 gene	protein-coding	0.000000	0.373134	-33(GCATATATATGG,-,0.00)
mm_36645.1	chr4	94477087	94477287	-	1	NA	NA	NA	79609	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.035000	0.472637	
mm_86354.1	chr9	123678732	123678932	-	1	NA	NA	NA	0	NM_139142	102680	Mm.440867	NM_139142	ENSMUSG00000036814	Slc6a20a	A730081N20Rik|AU022428|Xt3s1|Xtrp3s1	solute carrier family 6 (neurotransmitter transporter), member 20A	protein-coding	0.110000	0.666667	
mm_24314.1	chr3	89421528	89421728	+	1	NA	NA	NA	7	NM_001113331	20416	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	0.010000	0.572139	
mm_43714.1	chr5	139405216	139405416	+	1	NA	NA	NA	-1071	NM_177000	319772	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.015000	0.557214	
mm_162630.1	chr1	187078465	187078665	+	1	NA	NA	NA	-46573	NR_040554	69308	Mm.490882	NR_040554	ENSMUSG00000089730	1700007P06Rik	-	RIKEN cDNA 1700007P06 gene	ncRNA	0.005000	0.422886	
mm_59913.1	chr7	30415626	30415826	+	1	NA	NA	NA	1938	NM_011662	22177	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0.020000	0.472637	
mm_40609.1	chr5	64515843	64516043	+	1	NA	NA	NA	38935	NR_045413	77382	Mm.366742	NR_045411	ENSMUSG00000105352	C030018K13Rik	-	RIKEN cDNA C030018K13 gene	ncRNA	0.010000	0.487562	-71(GCTTAAATAGAG,+,0.00)
mm_70876.1	chr8	25101834	25102034	+	1	NA	NA	NA	-123	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.060000	0.701493	
mm_100494.1	chr11	120467662	120467862	+	1	NA	NA	NA	127	NM_001159328	15239	Mm.7919	NM_008244	ENSMUSG00000025793	Hgs	Hgr|Hrs|ZFYVE8|tn	HGF-regulated tyrosine kinase substrate	protein-coding	0.115000	0.696517	
mm_42531.1	chr5	115845165	115845365	+	1	NA	NA	NA	-391	NM_007708	12704	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0.080000	0.631841	
mm_42003.1	chr5	107905077	107905277	+	1	NA	NA	NA	4649	NM_016980	100503670	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	0.010000	0.442786	-67(GCATTTAAAGTC,+,0.00)
mm_105166.1	chr11	101771350	101771550	-	1	NA	NA	NA	13860	NM_008815	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.020000	0.552239	
mm_31789.1	chr4	63668502	63668702	+	1	NA	NA	NA	-46173	NM_029324	75524	Mm.38543	NM_029324	ENSMUSG00000058935	1700018C11Rik	bM230C2.3	RIKEN cDNA 1700018C11 gene	protein-coding	0.005000	0.477612	
mm_63318.1	chr7	126928803	126929003	+	1	NA	NA	NA	24	NM_172747	233877	Mm.245897	NM_172747	ENSMUSG00000030685	Kctd13	1500003N18Rik|AV259508|PDIP1alpha|Pdip1|Poldip1	potassium channel tetramerisation domain containing 13	protein-coding	0.170000	0.776119	
mm_37514.1	chr4	123907342	123907542	-	1	NA	NA	NA	2429	NM_019660	56309	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	0.000000	0.338308	
mm_141910.1	chr17	34969706	34969906	-	1	NA	NA	NA	2350	NM_010479	193740	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	0.010000	0.368159	
mm_71249.1	chr8	40915557	40915757	+	1	NA	NA	NA	-10576	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.010000	0.462687	
mm_142088.1	chr17	35779825	35780025	-	1	NA	NA	NA	7475	NR_045459	74601	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	0.000000	0.462687	
mm_128169.1	chr15	34099425	34099625	-	1	NA	NA	NA	16806	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.025000	0.378109	
mm_172207.1	chr6	57863398	57863598	-	1	NA	NA	NA	-19041	NM_134183	171201	Mm.377179	NM_134183	ENSMUSG00000058588	Vmn1r21	V1rc28	vomeronasal 1 receptor 21	protein-coding	0.005000	0.303483	80(CTTTTTATAGTT,+,0.00)
mm_43258.1	chr5	130222318	130222518	+	1	NA	NA	NA	83	NM_027854	71667	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0.175000	0.751244	
mm_121090.1	chr14	99301575	99301775	+	1	NA	NA	NA	2984	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.035000	0.547264	
mm_8886.1	chr1	162881463	162881663	-	1	NA	NA	NA	-14953	NM_010231	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.005000	0.447761	
mm_91784.1	chr10	52382008	52382208	-	1	NA	NA	NA	16	NM_053187	94221	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0.125000	0.731343	
mm_63582.1	chr7	128118069	128118269	+	1	NA	NA	NA	-11399	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.005000	0.412935	12(GGATATTAAAGG,-,0.00)
mm_138125.1	chr17	34157554	34157754	+	1	NA	NA	NA	4463	NM_010387	14999	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	0.030000	0.547264	
mm_132161.1	chr16	32183833	32184033	+	1	NA	NA	NA	4133	NM_001033539	328660	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.010000	0.467662	
mm_54798.1	chr6	41687420	41687620	-	1	NA	NA	NA	3089	NM_029671	76606	Mm.272520	NM_029671	ENSMUSG00000029867	1700034O15Rik	-	RIKEN cDNA 1700034O15 gene	protein-coding	0.005000	0.437811	
mm_168328.1	chr11	116389527	116389727	+	1	NA	NA	NA	23405	NM_027258	217340	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.030000	0.462687	-31(CTCTTTAAAGAG,+,0.00),-31(CTCTTTAAAGAG,-,0.00)
mm_137240.1	chr17	24470337	24470537	+	1	NA	NA	NA	-36	NM_025954	67078	Mm.28541	NM_025954	ENSMUSG00000043445	Pgp	1700012G19Rik|AI481330|AUM|G3PP	phosphoglycolate phosphatase	protein-coding	0.155000	0.766169	
mm_72469.1	chr8	83389740	83389940	+	1	NA	NA	NA	-2	NM_001329627	12745	Mm.358581	NM_009904	ENSMUSG00000002190	Clgn	4930459O04Rik|A2/6|AI528775|Cln	calmegin	protein-coding	0.140000	0.751244	
mm_47835.1	chr5	134313117	134313317	-	1	NA	NA	NA	1543	NM_001080746	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.030000	0.447761	
mm_161132.1	chr12	113489411	113489611	+	1	NA	NA	NA	-54	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.512438	
mm_6342.1	chr1	71637241	71637441	-	1	NA	NA	NA	15893	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.025000	0.487562	
mm_96962.1	chr11	70647201	70647401	+	1	NA	NA	NA	14	NM_027445	70510	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0.065000	0.577114	
mm_133986.1	chr16	4559994	4560194	-	1	NA	NA	NA	-374	NM_031182	83383	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.035000	0.527363	
mm_60601.1	chr7	44533589	44533789	+	1	NA	NA	NA	-1618	NM_019866	272382	Mm.8012	NM_019866	ENSMUSG00000008193	Spib	Spi-B	Spi-B transcription factor (Spi-1/PU.1 related)	protein-coding	0.060000	0.621891	
mm_109968.1	chr12	12850619	12850819	-	1	NA	NA	NA	91117	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.005000	0.467662	
mm_150167.1	chr19	32485695	32485895	+	1	NA	NA	NA	26	NM_010799	17330	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0.120000	0.686567	
mm_76991.1	chr8	107065522	107065722	-	1	NA	NA	NA	22	NM_025458	66269	Mm.23032	NM_025458	ENSMUSG00000031919	Tmed6	1810015P03Rik|1810018I24Rik	transmembrane p24 trafficking protein 6	protein-coding	0.025000	0.547264	
mm_95307.1	chr11	46222550	46222750	+	1	NA	NA	NA	-9485	NR_105955	102465598		NR_105955	ENSMUSG00000099230	Mir6989	Gm27885|mmu-mir-6989	microRNA 6989	ncRNA	0.055000	0.601990	
mm_6512.1	chr1	74393768	74393968	-	1	NA	NA	NA	-442	NR_029743	387219		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.025000	0.626866	
mm_38627.1	chr4	142084445	142084645	-	1	NA	NA	NA	-241	NM_145402	214359	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0.070000	0.641791	
mm_46590.1	chr5	107725316	107725516	-	1	NA	NA	NA	389	NM_001267621	14581	Mm.2078	NM_010278	ENSMUSG00000029275	Gfi1	AW495828|Gfi-1|Pal-1|Pal1	growth factor independent 1	protein-coding	0.080000	0.641791	
mm_163498.1	chr12	111920262	111920462	+	1	NA	NA	NA	-12307	NM_011625	21981	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.030000	0.577114	
mm_68553.1	chr7	114415047	114415247	-	1	NA	NA	NA	14	NR_029437	71045	Mm.235682	NR_029437	ENSMUSG00000087475	4933406I18Rik	4933403D24Rik	RIKEN cDNA 4933406I18 gene	ncRNA	0.195000	0.840796	
mm_5003.1	chr1	191977279	191977479	+	1	NA	NA	NA	9	NM_023727	74023	Mm.274393	NM_023727	ENSMUSG00000049353	Rd3	3322402L07Rik|rd-3|rd3	retinal degeneration 3	protein-coding	0.010000	0.587065	
mm_32140.1	chr4	99569426	99569626	+	1	NA	NA	NA	-86773	NM_010425	15221	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	0.040000	0.502488	
mm_3175.1	chr1	135739378	135739578	+	1	NA	NA	NA	10281	NM_007791	13007	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.020000	0.562189	
mm_116800.1	chr13	53915645	53915845	-	1	NA	NA	NA	139035	NM_001291801	13488	Mm.54161	NM_010076	ENSMUSG00000021478	Drd1	C030036C15Rik|Drd-1|Drd1a|Gpcr15	dopamine receptor D1	protein-coding	0.020000	0.502488	-35(GTGTATAAATAG,-,0.00)
mm_149244.1	chr19	10204119	10204319	+	1	NA	NA	NA	17	NM_026919	69038	Mm.375100	NM_026919	ENSMUSG00000036372	Tmem258	1810006K21Rik	transmembrane protein 258	protein-coding	0.055000	0.567164	
mm_20691.1	chr2	132792581	132792781	-	1	NA	NA	NA	11403	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.020000	0.462687	
mm_88713.1	chr10	80153948	80154148	+	1	NA	NA	NA	4366	NM_001305799	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.045000	0.646766	
mm_36662.1	chr4	95050337	95050537	-	1	NA	NA	NA	1785	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.060000	0.562189	
mm_17720.1	chr2	32387994	32388194	-	1	NA	NA	NA	-355	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.000000	0.572139	
mm_12826.1	chr2	80324286	80324486	+	1	NA	NA	NA	8920	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.015000	0.547264	
mm_93505.1	chr10	114419424	114419624	-	1	NA	NA	NA	381846	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	0.005000	0.363184	55(GGCTTTTTAAAG,-,0.00),57(CTTTTTAAAGTA,+,0.00)
mm_91994.1	chr10	62110918	62111118	-	1	NA	NA	NA	-5	NM_027251	69894	Mm.294126	NM_027251	ENSMUSG00000020083	2010107G23Rik	AA545165	RIKEN cDNA 2010107G23 gene	protein-coding	0.120000	0.741294	
mm_9448.1	chr1	172590558	172590758	-	1	NA	NA	NA	-90	NM_029084	74748	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	0.020000	0.532338	
mm_170039.1	chr17	24169294	24169494	-	1	NA	NA	NA	1	NR_037854	100039636	Mm.30155	NR_037854		Atp6v0c-ps2	Atp6l-ps2|Gm15487	ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2	pseudo	0.115000	0.661692	
mm_81462.1	chr9	109861505	109861705	+	1	NA	NA	NA	-12149	NM_009921	12796	Mm.3834	NM_009921	ENSMUSG00000038357	Camp	CAP18|Cnlp|Cramp|FALL39|MCLP	cathelicidin antimicrobial peptide	protein-coding	0.025000	0.587065	
mm_56572.1	chr6	106729806	106730006	-	1	NA	NA	NA	19131	NM_008370	16192	Mm.3448	NM_008370	ENSMUSG00000005364	Il5ra	CD125|CDw125|Il5r	interleukin 5 receptor, alpha	protein-coding	0.010000	0.492537	
mm_126845.1	chr15	89076038	89076238	+	1	NA	NA	NA	74	NM_026485	67976	Mm.284710	NM_026485	ENSMUSG00000015363	Trabd	5730502D15Rik|AL023039	TraB domain containing	protein-coding	0.185000	0.840796	
mm_95974.1	chr11	58961673	58961873	+	1	NA	NA	NA	62	NM_001318003	382523		NM_001318003		Gm12260	H3t|OTTMUSG00000005773	predicted gene 12260	protein-coding	0.050000	0.582090	-34(GTCTATAAAAGC,-,0.00)
mm_73941.1	chr8	120101344	120101544	+	1	NA	NA	NA	28	NM_133967	102193	Mm.240076	NM_133967	ENSMUSG00000031823	Zdhhc7	AL024087|Gramp2	zinc finger, DHHC domain containing 7	protein-coding	0.105000	0.651741	
mm_52821.1	chr6	121356733	121356933	+	1	NA	NA	NA	10136	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.025000	0.552239	
mm_103603.1	chr11	78404529	78404729	-	1	NA	NA	NA	10144	NR_003282	790911	Mm.457257	NR_003282	ENSMUSG00000085747	Slc13a2os	Gm11194|OTTMUSG00000000132	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand	ncRNA	0.025000	0.562189	
mm_101250.1	chr11	20741910	20742110	-	1	NA	NA	NA	-454	NM_181411	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.035000	0.417910	
mm_61973.1	chr7	90476598	90476798	+	1	NA	NA	NA	-703	NM_026734	68472	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	0.040000	0.527363	
mm_165935.1	chr4	69925732	69925932	+	1	NA	NA	NA	484603	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.050000	0.527363	
mm_120421.1	chr14	65375263	65375463	+	1	NA	NA	NA	16687	NM_199029	380912	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.015000	0.507463	
mm_72970.1	chr8	92880688	92880888	+	1	NA	NA	NA	-20607	NM_027112	69543	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	0.000000	0.407960	15(GTCCCTAAATGC,-,0.00),17(CCCTAAATGCCC,+,0.00)
mm_74433.1	chr8	3748829	3749029	-	1	NA	NA	NA	55	NM_133238	170786	Mm.32510	NM_133238	ENSMUSG00000031494	Cd209a	CD209|CDSIGN|CIRE|DC-SIGN|DC-SIGN1|Dcsign|SIGN-R1|SIGNR5	CD209a antigen	protein-coding	0.010000	0.487562	
mm_27726.1	chr3	69004459	69004659	-	1	NA	NA	NA	11	NM_026641	68259	Mm.389451	NM_026641	ENSMUSG00000027778	Ift80	4921524P20Rik|Wdr56|mKIAA1374	intraflagellar transport 80	protein-coding	0.070000	0.592040	
mm_103957.1	chr11	84129469	84129669	-	1	NA	NA	NA	-1	NM_172562	217031	Mm.45159	NM_172562	ENSMUSG00000018651	Tada2a	AV319371|D030022J10Rik|Tada2l	transcriptional adaptor 2A	protein-coding	0.205000	0.805970	
mm_77413.1	chr8	120628517	120628717	-	1	NA	NA	NA	5765	NM_197988	68918	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0.010000	0.582090	
mm_5268.1	chr1	17266936	17267136	-	1	NA	NA	NA	121663	NM_010267	14545	Mm.18218	NM_010267	ENSMUSG00000025777	Gdap1	-	ganglioside-induced differentiation-associated-protein 1	protein-coding	0.000000	0.313433	38(GACTATTAAAAG,-,0.00)
mm_37789.1	chr4	130334800	130335000	-	1	NA	NA	NA	25043	NM_153160	619605	Mm.297196	NM_153160	ENSMUSG00000028772	Zcchc17	2810055E05Rik|HSPC251|LDC4|pNO40|pS1D	zinc finger, CCHC domain containing 17	protein-coding	0.005000	0.333333	
mm_80069.1	chr9	69467857	69468057	+	1	NA	NA	NA	11013	NR_037296	100526560		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0.025000	0.492537	
mm_167241.1	chr8	19979956	19980156	+	1	NA	NA	NA	250480	NM_001039553	626415	Mm.425517	NM_001039553	ENSMUSG00000096265	4930467E23Rik	ENSMUSG00000074453|OTTMUSG00000018948|TSAP	RIKEN cDNA 4930467E23 gene	protein-coding	0.105000	0.686567	
mm_129241.1	chr15	76656641	76656841	-	1	NA	NA	NA	160	NM_001276321	54151	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0.165000	0.825871	
mm_118519.1	chr14	14702958	14703158	+	1	NA	NA	NA	33	NM_001033270	218756	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.170000	0.835821	
mm_83087.1	chr9	40306906	40307106	-	1	NA	NA	NA	-26466	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.025000	0.567164	
mm_74535.1	chr8	9727934	9728134	-	1	NA	NA	NA	42989	NM_173446	270028	Mm.268163	NM_173446	ENSMUSG00000079157	Fam155a	6430500D16|AW121567|Tmem28	family with sequence similarity 155, member A	protein-coding	0.005000	0.393035	
mm_44282.1	chr5	8067566	8067766	-	1	NA	NA	NA	11124	NM_001080974	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.020000	0.407960	-35(CTCTATATAAAG,-,0.00),-33(CTATATAAAGTC,+,0.00)
mm_119510.1	chr14	47384581	47384781	+	1	NA	NA	NA	10821	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.010000	0.437811	
mm_132534.1	chr16	37868332	37868532	+	1	NA	NA	NA	32	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.205000	0.800995	
mm_58573.1	chr7	4812883	4813083	+	1	NA	NA	NA	-643	NM_133777	77891	Mm.389787	NM_133777	ENSMUSG00000060860	Ube2s	0910001J09Rik|6720465F12Rik|AA409170|E2-EPF	ubiquitin-conjugating enzyme E2S	protein-coding	0.030000	0.487562	
mm_117777.1	chr13	96670771	96670971	-	1	NA	NA	NA	65	NM_008255	15357	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0.110000	0.701493	
mm_15343.1	chr2	156017565	156017765	+	1	NA	NA	NA	9540	NM_025516	66366	Mm.141276	NM_025516	ENSMUSG00000005881	Ergic3	2310015B14Rik|AV318804|CGI-54|D2Ucla1|NY-BR-84|Sdbcag84	ERGIC and golgi 3	protein-coding	0.030000	0.587065	
mm_74080.1	chr8	122476110	122476310	+	1	NA	NA	NA	67	NM_153775	66965	Mm.482288	NM_153775	ENSMUSG00000049482	Ctu2	2310061F22Rik|C16orf84|Ncs2	cytosolic thiouridylase subunit 2	protein-coding	0.140000	0.731343	
mm_83122.1	chr9	40407967	40408167	-	1	NA	NA	NA	47697	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.020000	0.527363	43(GTCTTTATAAGA,-,0.00)
mm_58594.1	chr7	5020347	5020547	+	1	NA	NA	NA	71	NM_001033383	319748	Mm.86607	NM_001033383	ENSMUSG00000074405	Zfp865	6430526N21Rik|Znf865	zinc finger protein 865	protein-coding	0.110000	0.686567	
mm_5013.1	chr1	192841572	192841772	+	1	NA	NA	NA	-33	NR_040468	73455	Mm.414869	NR_040468		1700065J18Rik	-	RIKEN cDNA 1700065J18 gene	ncRNA	0.005000	0.487562	
mm_42724.1	chr5	120588941	120589141	+	1	NA	NA	NA	18	NM_029408	75732	Mm.425285	NM_029408	ENSMUSG00000029601	Iqcd	4933433C09Rik|AI662646	IQ motif containing D	protein-coding	0.045000	0.532338	
mm_168207.1	chr10	71318662	71318862	+	1	NA	NA	NA	26087	NM_134007	52637	Mm.254114	NM_134007	ENSMUSG00000037710	Cisd1	AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding	0.000000	0.407960	
mm_36427.1	chr4	82293163	82293363	-	1	NA	NA	NA	212516	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.010000	0.348259	
mm_102872.1	chr11	69409053	69409253	-	1	NA	NA	NA	4522	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.050000	0.562189	
mm_119325.1	chr14	37581000	37581200	+	1	NA	NA	NA	-445778	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.000000	0.462687	
mm_156420.1	chrX	140907519	140907719	+	1	NA	NA	NA	11	NM_030181	78789	Mm.244932	NM_026103	ENSMUSG00000031430	Vsig1	1700062D20Rik|4930405J24Rik	V-set and immunoglobulin domain containing 1	protein-coding	0.020000	0.497512	
mm_137519.1	chr17	27203208	27203408	+	1	NA	NA	NA	1130	NM_146075	224640	Mm.29689	NM_146075	ENSMUSG00000044857	Lemd2	BC026588|Lem2|NET25	LEM domain containing 2	protein-coding	0.025000	0.606965	
mm_18397.1	chr2	60252394	60252594	-	1	NA	NA	NA	31990	NM_025422	66205	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.040000	0.388060	
mm_153497.1	chr19	41332267	41332467	-	1	NA	NA	NA	52703	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.035000	0.517413	
mm_84047.1	chr9	58102164	58102364	-	1	NA	NA	NA	33	NM_001311085	382077	Mm.335193	NM_029212	ENSMUSG00000037716	Ccdc33	4930535E21Rik|Gm1117|Tzip1	coiled-coil domain containing 33	protein-coding	0.010000	0.522388	
mm_96114.1	chr11	60699702	60699902	+	1	NA	NA	NA	112	NM_008502	16897	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	lethal giant larvae homolog 1 (Drosophila)	protein-coding	0.175000	0.786070	
mm_51019.1	chr6	65042590	65042790	+	1	NA	NA	NA	23	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.105000	0.646766	
mm_149916.1	chr19	26606525	26606725	+	1	NA	NA	NA	1465	NM_011416	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.035000	0.606965	
mm_146176.1	chr18	75368073	75368273	+	1	NA	NA	NA	808	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.030000	0.477612	-17(TCTTTTAAACCC,+,0.00)
mm_25112.1	chr3	101526951	101527151	+	1	NA	NA	NA	77656	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.015000	0.442786	-36(CCCCATATAAAG,-,0.00),-34(CCATATAAAGAG,+,0.00)
mm_50234.1	chr6	42351057	42351257	+	1	NA	NA	NA	1329	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.005000	0.656716	
mm_95381.1	chr11	49174516	49174716	+	1	NA	NA	NA	12473	NM_172793	237754	Mm.130787	NM_172793	ENSMUSG00000040283	Btnl9	B430208I01|Btn3|D330012D11Rik	butyrophilin-like 9	protein-coding	0.010000	0.522388	
mm_144065.1	chr17	90867924	90868124	-	1	NA	NA	NA	6855	NR_045463	78800	Mm.410772	NR_045463	ENSMUSG00000090160	4930480K15Rik	-	RIKEN cDNA 4930480K15 gene	ncRNA	0.000000	0.238806	
mm_165458.1	chr2	158175339	158175539	-	1	NA	NA	NA	-16569	NR_036606	73399	Mm.416861	NR_036606	ENSMUSG00000078957	1700060C20Rik	-	RIKEN cDNA 1700060C20 gene	ncRNA	0.020000	0.537313	
mm_112389.1	chr12	119238371	119238571	-	1	NA	NA	NA	-195	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.055000	0.616915	
mm_158707.1	chrX	162375370	162375570	-	1	NA	NA	NA	-216029	NM_001290526	195727	Mm.336313	NM_001081052	ENSMUSG00000059493	Nhs	Gm389|Gm48|Nhs1|Xcat	Nance-Horan syndrome (human)	protein-coding	0.000000	0.393035	
mm_78178.1	chr9	21184079	21184279	+	1	NA	NA	NA	78	NM_001310750	18577	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.080000	0.706468	
mm_56519.1	chr6	99504694	99504894	-	1	NA	NA	NA	16199	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.000000	0.477612	
mm_122551.1	chr14	48667431	48667631	-	1	NA	NA	NA	113	NM_001286482	18424	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	0.025000	0.462687	
mm_137938.1	chr17	32658986	32659186	+	1	NA	NA	NA	-397	NM_001101588	631304	Mm.328950	NM_001101588	ENSMUSG00000090700	Cyp4f40	EG631304	cytochrome P450, family 4, subfamily f, polypeptide 40	protein-coding	0.005000	0.537313	
mm_119734.1	chr14	54120282	54120482	+	1	NA	NA	NA	133547	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.492537	
mm_8176.1	chr1	138073584	138073784	-	1	NA	NA	NA	101442	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.348259	-47(GGATTTTAAAGG,-,0.00)
mm_28764.1	chr3	95891862	95892062	-	1	NA	NA	NA	43	NM_001346514	229600	Mm.89556	NM_153513	ENSMUSG00000038543	BC028528	L259	cDNA sequence BC028528	protein-coding	0.005000	0.522388	41(CTCTTTATAGCC,+,0.00)
mm_4346.1	chr1	171857004	171857204	+	1	NA	NA	NA	17407	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.010000	0.383085	-80(AGCCATTAAAAG,-,0.00),-78(CCATTAAAAGTC,+,0.00)
mm_152777.1	chr19	21172401	21172601	-	1	NA	NA	NA	67791	NR_126458	75354	Mm.243873	NR_126458		4930554I06Rik	-	RIKEN cDNA 4930554I06 gene	ncRNA	0.005000	0.482587	
mm_31202.1	chr4	43727125	43727325	+	1	NA	NA	NA	27	NM_027511	100039781	Mm.18796	NM_027511	ENSMUSG00000071001	Hrct1	3830408D24Rik	histidine rich carboxyl terminus 1	protein-coding	0.010000	0.587065	
mm_11236.1	chr2	29827286	29827486	+	1	NA	NA	NA	-3	NM_026615	68205	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	0.090000	0.592040	
mm_100824.1	chr11	5261638	5261838	-	1	NA	NA	NA	-128	NM_032396	84035	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	0.145000	0.820896	
mm_153755.1	chr19	45236750	45236950	-	1	NA	NA	NA	-1614	NM_010691	16814	Mm.116815	NM_010691	ENSMUSG00000025216	Lbx1	Lbx1h	ladybird homeobox homolog 1 (Drosophila)	protein-coding	0.090000	0.751244	
mm_83664.1	chr9	49630191	49630391	-	1	NA	NA	NA	112003	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.005000	0.258706	
mm_130138.1	chr15	90898343	90898543	-	1	NA	NA	NA	33	NR_033583	20738	Mm.431547	NR_033583		Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.020000	0.537313	
mm_50293.1	chr6	47454890	47455090	+	1	NA	NA	NA	666	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.110000	0.676617	
mm_91541.1	chr10	39613561	39613761	-	1	NA	NA	NA	727	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.030000	0.497512	-64(GTTTTTAAAGAC,+,0.00),65(CCTTATAGAGTT,+,0.00)
mm_30669.1	chr4	11155093	11155293	+	1	NA	NA	NA	-1248	NM_001199105	60599	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.015000	0.462687	
mm_162654.1	chr10	4156257	4156457	+	1	NA	NA	NA	-109972	NM_031185	83397	Mm.27481	NM_031185	ENSMUSG00000038587	Akap12	AI317366|SSeCKS|Srcs5|Tsga12	A kinase (PRKA) anchor protein (gravin) 12	protein-coding	0.010000	0.497512	67(GCCTCTTAAAGG,-,0.00),68(CCTCTTAAAGGT,+,0.00)
mm_143509.1	chr17	72593520	72593720	-	1	NA	NA	NA	10687	NM_007439	11682	Mm.311854	NM_007439	ENSMUSG00000055471	Alk	CD246|Tcrz	anaplastic lymphoma kinase	protein-coding	0.010000	0.407960	
mm_67475.1	chr7	80522358	80522558	-	1	NA	NA	NA	12540	NM_007550	12144	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ helicase-like	protein-coding	0.010000	0.452736	
mm_60113.1	chr7	35451296	35451496	+	1	NA	NA	NA	2217	NM_021291	30962	Mm.45874	NM_021291	ENSMUSG00000030492	Slc7a9	CSNU3	solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	protein-coding	0.010000	0.378109	
mm_111840.1	chr12	107928776	107928976	-	1	NA	NA	NA	74538	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.040000	0.492537	
mm_20835.1	chr2	147186301	147186501	-	1	NA	NA	NA	1	NM_001077632	18088	Mm.330639	NM_010919	ENSMUSG00000027434	Nkx2-2	Nkx-2.2|Nkx2.2|tinman	NK2 homeobox 2	protein-coding	0.075000	0.646766	-35(CCTTATATGGAC,+,0.00)
mm_62614.1	chr7	107209091	107209291	+	1	NA	NA	NA	-254	NM_029660	76572	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	0.050000	0.517413	
mm_54627.1	chr6	38688959	38689159	-	1	NA	NA	NA	25990	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.005000	0.482587	
mm_91251.1	chr10	22731795	22731995	-	1	NA	NA	NA	-448	NM_011603	237336	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.130000	0.741294	
mm_94346.1	chr11	4883104	4883304	+	1	NA	NA	NA	-8141	NR_105883	102466764		NR_105883	ENSMUSG00000098296	Mir6918	Gm27968|mmu-mir-6918	microRNA 6918	ncRNA	0.020000	0.537313	
mm_170125.1	chr17	39846874	39847074	+	1	NA	NA	NA	3977	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.065000	0.497512	
mm_53276.1	chr6	128648863	128649063	+	1	NA	NA	NA	-13422	NM_053165	94071	Mm.197689	NM_053165	ENSMUSG00000030364	Clec2h	Clrf|clr-f	C-type lectin domain family 2, member h	protein-coding	0.015000	0.497512	
mm_38245.1	chr4	136602513	136602713	-	1	NA	NA	NA	110	NM_133872	99982	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	0.165000	0.786070	
mm_82705.1	chr9	22486258	22486458	-	1	NA	NA	NA	10643	NM_178415	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.025000	0.477612	
mm_71005.1	chr8	31111754	31111954	+	1	NA	NA	NA	8	NM_175136	68867	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	0.085000	0.706468	
mm_59086.1	chr7	19696171	19696371	+	1	NA	NA	NA	2127	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.005000	0.492537	
mm_108064.1	chr12	73937624	73937824	+	1	NA	NA	NA	-26806	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.005000	0.422886	
mm_136284.1	chr16	91362667	91362867	-	1	NA	NA	NA	-10016	NM_010509	15976	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.025000	0.572139	
mm_37566.1	chr4	126236508	126236708	-	1	NA	NA	NA	19711	NM_144941	245877	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0.055000	0.547264	
mm_101949.1	chr11	50238401	50238601	-	1	NA	NA	NA	31	NM_001313968	17001	Mm.245151	NM_008521	ENSMUSG00000020377	Ltc4s	-	leukotriene C4 synthase	protein-coding	0.035000	0.587065	
mm_1577.1	chr1	74281066	74281266	+	1	NA	NA	NA	2566	NM_174985	227289	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.020000	0.527363	
mm_128527.1	chr15	54847228	54847428	-	1	NA	NA	NA	72818	NM_015744	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.015000	0.437811	
mm_41884.1	chr5	105415694	105415894	+	1	NA	NA	NA	19	NM_001033550	433926	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0.205000	0.820896	
mm_61226.1	chr7	64501944	64502144	+	1	NA	NA	NA	-94	NM_001291166	11784	Mm.4657	NM_007461	ENSMUSG00000030519	Apba2	X11-like|X11L|XllL|mXllL	amyloid beta (A4) precursor protein-binding, family A, member 2	protein-coding	0.160000	0.751244	
mm_6292.1	chr1	71028509	71028709	-	1	NA	NA	NA	74363	NM_007525	12021	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	ENSMUSG00000060893|ENSMUSG00000073653	BRCA1 associated RING domain 1	protein-coding	0.020000	0.442786	
mm_40968.1	chr5	76998118	76998318	+	1	NA	NA	NA	-5837	NM_206935	384185	Mm.451858	NM_206935	ENSMUSG00000063820	Arl9	1700110A09Rik	ADP-ribosylation factor-like 9	protein-coding	0.035000	0.517413	
mm_102270.1	chr11	55394651	55394851	-	1	NA	NA	NA	25329	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.005000	0.457711	
mm_59237.1	chr7	24778118	24778318	+	1	NA	NA	NA	1014	NM_007675	26366	Mm.30300	NM_007675	ENSMUSG00000054169	Ceacam10	Bgp3|Cea10	carcinoembryonic antigen-related cell adhesion molecule 10	protein-coding	0.035000	0.492537	
mm_53775.1	chr6	146170919	146171119	+	1	NA	NA	NA	236872	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.030000	0.597015	
mm_129795.1	chr15	82870739	82870939	-	1	NA	NA	NA	27622	NR_027799	21378	Mm.417272	NR_027799		Tbrg3	TB-11	transforming growth factor beta regulated gene 3	ncRNA	0.005000	0.298507	
mm_69091.1	chr7	127017278	127017478	-	1	NA	NA	NA	-26	NM_030240	67278	Mm.345385	NM_030240	ENSMUSG00000030680	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0.080000	0.572139	
mm_135848.1	chr16	59492348	59492548	-	1	NA	NA	NA	20673	NM_025910	67014	Mm.289150	NM_025910	ENSMUSG00000022724	Mina	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204	myc induced nuclear antigen	protein-coding	0.020000	0.427861	-55(TTTTTTATACAC,+,0.00),69(CCTCTTATGGGT,+,0.00)
mm_12312.1	chr2	69135730	69135930	+	1	NA	NA	NA	30	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.035000	0.517413	
mm_147948.1	chr18	66476458	66476658	-	1	NA	NA	NA	17954	NM_021451	58801	Mm.271878	NM_021451	ENSMUSG00000024521	Pmaip1	Noxa	phorbol-12-myristate-13-acetate-induced protein 1	protein-coding	0.015000	0.432836	-34(TTCTATAAATAG,-,0.00)
mm_24945.1	chr3	96596607	96596807	+	1	NA	NA	NA	71	NM_001024851	545554	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	0.060000	0.676617	
mm_135164.1	chr16	35871280	35871480	-	1	NA	NA	NA	2	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.050000	0.527363	
mm_95645.1	chr11	53723640	53723840	+	1	NA	NA	NA	2946	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.015000	0.383085	
mm_44219.1	chr5	4757911	4758111	-	1	NA	NA	NA	205	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.090000	0.681592	
mm_149533.1	chr19	12464804	12465004	+	1	NA	NA	NA	4125	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.015000	0.447761	
mm_126386.1	chr15	80173563	80173763	+	1	NA	NA	NA	-58	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.170000	0.845771	
mm_102580.1	chr11	61761487	61761687	-	1	NA	NA	NA	501	NM_144806	212627	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0.025000	0.378109	
mm_163641.1	chr13	61804190	61804390	+	1	NA	NA	NA	32710	NR_028430	432812	Mm.317358	NR_028430		BC052688	-	cDNA sequence BC052688	pseudo	0.030000	0.532338	
mm_16268.1	chr2	173659712	173659912	+	1	NA	NA	NA	-33	NM_024436	19334	Mm.275304	NM_024436	ENSMUSG00000027519	Rab22a	3732413A17Rik|AI662177|AW319644|AW550514|E130120E14Rik|Rab22	RAB22A, member RAS oncogene family	protein-coding	0.110000	0.756219	
mm_21053.1	chr2	152627174	152627374	-	1	NA	NA	NA	266	NM_009047	19700	Mm.8752	NM_009047	ENSMUSG00000000359	Rem1	E030011C07Rik|Ras|Rem	rad and gem related GTP binding protein 1	protein-coding	0.080000	0.656716	
mm_74290.1	chr8	125910348	125910548	+	1	NA	NA	NA	-2	NM_145608	234878	Mm.216458	NM_145608	ENSMUSG00000031853	Map3k21	Mlk4|mKIAA1804	mitogen-activated protein kinase kinase kinase 21	protein-coding	0.060000	0.656716	
mm_64169.1	chr7	141447781	141447981	+	1	NA	NA	NA	231	NM_026020	67186	Mm.380435	NM_026020	ENSMUSG00000025508	Rplp2	2700049I22Rik	ribosomal protein, large P2	protein-coding	0.055000	0.606965	
mm_68480.1	chr7	110926592	110926792	-	1	NA	NA	NA	19495	NM_010826	17540	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0.015000	0.557214	
mm_133730.1	chr16	93798780	93798980	+	1	NA	NA	NA	-33241	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.015000	0.532338	
mm_152172.1	chr19	7341509	7341709	-	1	NA	NA	NA	251	NM_001080389	13728	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.100000	0.701493	
mm_43165.1	chr5	127241692	127241892	+	1	NA	NA	NA	-34	NM_175432	208213	Mm.444235	NM_175432	ENSMUSG00000034324	Tmem132c	2810482M11Rik|3230401P16|4632425D07Rik	transmembrane protein 132C	protein-coding	0.115000	0.751244	
mm_49238.1	chr6	17286941	17287141	+	1	NA	NA	NA	5856	NM_016900	12390	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	0.025000	0.492537	
mm_109555.1	chr12	111758782	111758982	+	1	NA	NA	NA	14	NM_001025361	16593	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0.155000	0.776119	
mm_71317.1	chr8	43703384	43703584	+	1	NA	NA	NA	-3993	NM_001079931	384814	Mm.491652	NM_001079931		Gm5347	EG384814	predicted gene 5347	protein-coding	0.000000	0.407960	
mm_75125.1	chr8	34890542	34890742	-	1	NA	NA	NA	75048	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.025000	0.462687	
mm_94173.1	chr10	128821504	128821704	-	1	NA	NA	NA	27	NM_024180	66844	Mm.235562	NM_024180	ENSMUSG00000025353	Ormdl2	0610012C09Rik	ORM1-like 2 (S. cerevisiae)	protein-coding	0.060000	0.567164	78(AACTTTAAAAAG,-,0.00)
mm_38181.1	chr4	135272664	135272864	-	1	NA	NA	NA	-4	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.110000	0.726368	
mm_107934.1	chr12	71355345	71355545	+	1	NA	NA	NA	28763	NR_136902	67348	Mm.54261	NR_136902	ENSMUSG00000100668	1700083H02Rik	100041190|Gm3190	RIKEN cDNA 1700083H02 gene	ncRNA	0.005000	0.398010	60(CACCTTTAAAAG,-,0.00),61(ACCTTTAAAAGA,-,0.00),62(CCTTTAAAAGAT,+,0.00)
mm_4329.1	chr1	171854107	171854307	+	1	NA	NA	NA	14510	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.000000	0.407960	
mm_169341.1	chr14	13694489	13694689	+	1	NA	NA	NA	23713	NM_177624	218739	Mm.39919	NM_177624	ENSMUSG00000044772	Sntn	A430083B19Rik	sentan, cilia apical structure protein	protein-coding	0.070000	0.666667	
mm_88122.1	chr10	69219328	69219528	+	1	NA	NA	NA	6234	NM_001252638	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.005000	0.477612	
mm_68153.1	chr7	102250373	102250573	-	1	NA	NA	NA	-355	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.050000	0.666667	
mm_40702.1	chr5	65861067	65861267	+	1	NA	NA	NA	-2402	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.025000	0.547264	
mm_51008.1	chr6	64734552	64734752	+	1	NA	NA	NA	5506	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal bHLH transcription factor 1	protein-coding	0.100000	0.686567	
mm_150582.1	chr19	40659694	40659894	+	1	NA	NA	NA	24	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.030000	0.502488	
mm_133319.1	chr16	77670147	77670347	+	1	NA	NA	NA	23974	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0.015000	0.407960	
mm_109148.1	chr12	107183457	107183657	+	1	NA	NA	NA	-467233	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.030000	0.542289	
mm_66032.1	chr7	30626033	30626233	-	1	NA	NA	NA	18	NM_025628	110323	Mm.400	NM_025628	ENSMUSG00000036751	Cox6b1	2010000G05Rik|Cox6b	cytochrome c oxidase, subunit VIb polypeptide 1	protein-coding	0.075000	0.597015	
mm_144167.1	chr18	6490050	6490250	+	1	NA	NA	NA	496	NR_035446	100316773		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	0.090000	0.696517	
mm_134536.1	chr16	19701230	19701430	-	1	NA	NA	NA	5035	NM_177356	239739	Mm.258059	NM_177356	ENSMUSG00000041247	Lamp3	1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403	lysosomal-associated membrane protein 3	protein-coding	0.000000	0.338308	
mm_100130.1	chr11	115974453	115974653	+	1	NA	NA	NA	-172	NM_001005608	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.015000	0.497512	
mm_154602.1	chrX	7632672	7632872	+	1	NA	NA	NA	-5808	NM_009305	20977	Mm.223674	NM_009305	ENSMUSG00000031144	Syp	A230093K24Rik|AI848995|Syn|p38	synaptophysin	protein-coding	0.010000	0.527363	
mm_31318.1	chr4	46138653	46138853	+	1	NA	NA	NA	242	NM_001033201	433702	Mm.389536	NM_001033201	ENSMUSG00000028330	Ncbp1	AU014645|AW538051|CBP80	nuclear cap binding protein subunit 1	protein-coding	0.145000	0.731343	
mm_73302.1	chr8	105131754	105131954	+	1	NA	NA	NA	54	NM_146213	234677	Mm.120297	NM_146213	ENSMUSG00000060560	Ces4a	Ces8	carboxylesterase 4A	protein-coding	0.015000	0.552239	
mm_111681.1	chr12	103382492	103382692	-	1	NA	NA	NA	5698	NR_033587	68149	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	0.005000	0.537313	
mm_2816.1	chr1	130878253	130878453	+	1	NA	NA	NA	9058	NM_053095	93672	Mm.196691	NM_053095	ENSMUSG00000026420	Il24	FISP|Mda-7|Mda7|St16	interleukin 24	protein-coding	0.100000	0.676617	
mm_98002.1	chr11	84173411	84173611	+	1	NA	NA	NA	-6035	NM_001037932	628813	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690|OTTMUSG00000000997	predicted gene 11437	protein-coding	0.000000	0.402985	
mm_127855.1	chr15	8347374	8347574	-	1	NA	NA	NA	96989	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.010000	0.482587	
mm_127274.1	chr15	99725605	99725805	+	1	NA	NA	NA	87	NM_183256	66379	Mm.5265	NM_183256	ENSMUSG00000023020	Cox14	2310016M24Rik|AA959804	cytochrome c oxidase assembly protein 14	protein-coding	0.090000	0.641791	
mm_160000.1	chr6	119449090	119449290	-	1	NA	NA	NA	196	NM_001271757	22419	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0.080000	0.597015	-93(CGGTCTAAAAAG,-,0.00)
mm_49013.1	chr6	4758405	4758605	+	1	NA	NA	NA	11199	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.343284	
mm_41968.1	chr5	107333026	107333226	+	1	NA	NA	NA	1932	NM_054054	114642	Mm.182836	NM_054054	ENSMUSG00000029279	Brdt	7420412D09Rik|Brd6|Fsrg3	bromodomain, testis-specific	protein-coding	0.015000	0.417910	
mm_155875.1	chrX	101447827	101448027	+	1	NA	NA	NA	-1182	NM_013712	26549	Mm.46232	NM_013712	ENSMUSG00000031312	Itgb1bp2	Chordc3	integrin beta 1 binding protein 2	protein-coding	0.000000	0.452736	
mm_37716.1	chr4	129542591	129542791	-	1	NA	NA	NA	-45	NM_008228	433759	Mm.202504	NM_008228	ENSMUSG00000028800	Hdac1	HD1|Hdac1-ps|MommeD5|RPD3	histone deacetylase 1	protein-coding	0.110000	0.706468	
mm_73298.1	chr8	105083521	105083721	+	1	NA	NA	NA	-134	NM_144511	13909	Mm.482444	NM_144511	ENSMUSG00000062181	Ces3b	Ces31L|Ces3L|EG13909|ES31L|Es31|Gm4738	carboxylesterase 3B	protein-coding	0.010000	0.522388	
mm_130060.1	chr15	89181032	89181232	-	1	NA	NA	NA	-344	NM_138749	140570	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.080000	0.676617	
mm_46479.1	chr5	105131775	105131975	-	1	NA	NA	NA	7677	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.417910	
mm_21762.1	chr2	164840266	164840466	-	1	NA	NA	NA	6593	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.030000	0.597015	
mm_98064.1	chr11	85832745	85832945	+	1	NA	NA	NA	230	NM_009324	21385	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0.080000	0.686567	
mm_89774.1	chr10	100544312	100544512	+	1	NA	NA	NA	44847	NM_175128	68281	Mm.268474	NM_175128	ENSMUSG00000046567	4930430F08Rik	4930571E09Rik|A730088G13Rik|AW551239|C430008C19Rik	RIKEN cDNA 4930430F08 gene	protein-coding	0.005000	0.432836	
mm_118614.1	chr14	21032360	21032560	+	1	NA	NA	NA	19982	NM_018829	55946	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.005000	0.482587	
mm_21409.1	chr2	158117699	158117899	-	1	NA	NA	NA	-26002	NR_040609	72340	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0.025000	0.537313	
mm_31689.1	chr4	62360106	62360306	+	1	NA	NA	NA	342	NM_001045528	338355	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.055000	0.572139	
mm_125684.1	chr15	66798637	66798837	+	1	NA	NA	NA	33092	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.005000	0.472637	
mm_55663.1	chr6	72436979	72437179	-	1	NA	NA	NA	-1604	NR_046011	78108	Mm.440743	NR_046011	ENSMUSG00000108591	Particl	4930414L22Rik|AI449819	promoter of Mat2a antisense radiation induced circulating long non-coding RNA	ncRNA	0.005000	0.358209	
mm_96634.1	chr11	69324051	69324251	+	1	NA	NA	NA	165	NM_001024206	245828	Mm.28073	NM_001024206	ENSMUSG00000049299	Trappc1	BET5|D11Ertd172e|MUM2	trafficking protein particle complex 1	protein-coding	0.030000	0.532338	
mm_151117.1	chr19	47864527	47864727	+	1	NA	NA	NA	-918	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.005000	0.442786	
mm_167333.1	chr8	70758162	70758362	+	1	NA	NA	NA	2659	NM_183170	234384	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0.025000	0.547264	
mm_154716.1	chrX	9199786	9199986	+	1	NA	NA	NA	-87	NM_173414	236285	Mm.245119	NM_173414	ENSMUSG00000047344	Lancl3	6030463G20Rik	LanC lantibiotic synthetase component C-like 3 (bacterial)	protein-coding	0.080000	0.706468	
mm_106159.1	chr11	116626772	116626972	-	1	NA	NA	NA	147	NM_172572	217344	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.020000	0.636816	
mm_86868.1	chr10	21993936	21994136	+	1	NA	NA	NA	146	NM_001161850	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.110000	0.671642	
mm_135424.1	chr16	45275639	45275839	-	1	NA	NA	NA	51402	NM_177584	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.005000	0.432836	
mm_127582.1	chr15	102326077	102326277	+	1	NA	NA	NA	61	NM_027044	56612	Mm.158264	NM_020031	ENSMUSG00000001289	Pfdn5	1190001O17Rik|1700010A06Rik|D15Ertd697e|Eig1|MM-1	prefoldin 5	protein-coding	0.080000	0.621891	
mm_122752.1	chr14	54197782	54197982	-	1	NA	NA	NA	56047	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.452736	
mm_116360.1	chr13	40729998	40730198	-	1	NA	NA	NA	359	NM_001122948	21418	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.035000	0.487562	
mm_66572.1	chr7	45325233	45325433	-	1	NA	NA	NA	375	NR_110499	100040970	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	ENSMUSG00000046721|Gm9811	ribosomal protein L14, pseudogene 1	pseudo	0.010000	0.447761	
mm_63078.1	chr7	122219562	122219762	+	1	NA	NA	NA	166	NM_027363	70261	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.060000	0.611940	
mm_86891.1	chr10	22301691	22301891	+	1	NA	NA	NA	-4929	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.000000	0.462687	-34(CCTTAACTAGGC,+,0.00)
mm_47411.1	chr5	123135419	123135619	-	1	NA	NA	NA	-2890	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.060000	0.597015	-3(CTTTTTAGACTC,+,0.00)
mm_10179.1	chr2	4700127	4700327	+	1	NA	NA	NA	-17604	NM_001190400	209645	Mm.149539	NM_178663	ENSMUSG00000048186	Bend7	1110017O21Rik|E130319B15Rik	BEN domain containing 7	protein-coding	0.015000	0.482587	
mm_149986.1	chr19	29251523	29251723	+	1	NA	NA	NA	-180	NM_001048177	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.170000	0.835821	
mm_136266.1	chr16	91043808	91044008	-	1	NA	NA	NA	471	NM_026110	67367	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.085000	0.701493	
mm_163898.1	chr14	27745549	27745749	+	1	NA	NA	NA	123242	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	0.010000	0.437811	
mm_120539.1	chr14	67234634	67234834	+	1	NA	NA	NA	1442	NM_001276387	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.040000	0.567164	
mm_105654.1	chr11	107213863	107214063	-	1	NA	NA	NA	-24582	NM_001161329	68979	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.000000	0.333333	
mm_37001.1	chr4	110351798	110351998	-	1	NA	NA	NA	13	NM_001163397	15572	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein-coding	0.125000	0.711443	
mm_51412.1	chr6	78380705	78380905	+	1	NA	NA	NA	96	NM_011259	19694	Mm.2552	NM_011259	ENSMUSG00000079516	Reg3a	AV063448	regenerating islet-derived 3 alpha	protein-coding	0.005000	0.417910	
mm_24692.1	chr3	95015636	95015836	+	1	NA	NA	NA	-498	NM_030074	78266	Mm.389478	NM_030074	ENSMUSG00000019338	Zfp687	4931408L03Rik|Znf687|mKIAA1441	zinc finger protein 687	protein-coding	0.055000	0.597015	
mm_40830.1	chr5	72914228	72914428	+	1	NA	NA	NA	-34	NM_001113423	75991	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0.125000	0.756219	
mm_86950.1	chr10	24902042	24902242	+	1	NA	NA	NA	-8522	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.020000	0.482587	
mm_166881.1	chr7	25517582	25517782	-	1	NA	NA	NA	22322	NM_001113368	26367	Mm.439731	NM_007543	ENSMUSG00000054385	Ceacam2	AI267129|Bgp2|Ceacam2-L	carcinoembryonic antigen-related cell adhesion molecule 2	protein-coding	0.005000	0.447761	65(CTCTTTAAAGGC,+,0.00),65(CTCTTTAAAGGC,-,0.00)
mm_118883.1	chr14	26330970	26331170	+	1	NA	NA	NA	-26477	NR_038005	71106	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.005000	0.462687	15(CCCTAGAAAAGC,-,0.00)
mm_25967.1	chr3	132766473	132766673	+	1	NA	NA	NA	82429	NM_001163455	271981	Mm.257864	NM_173032	ENSMUSG00000028030	Tbck	1700120J03Rik|9430001M19|A630047E20Rik|C030007I09Rik|Tbckl	TBC1 domain containing kinase	protein-coding	0.010000	0.462687	
mm_52794.1	chr6	121270379	121270579	+	1	NA	NA	NA	24573	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.025000	0.492537	
mm_71116.1	chr8	36094614	36094814	+	1	NA	NA	NA	-114	NM_172911	244418	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.140000	0.786070	
mm_10328.1	chr2	11339444	11339644	+	1	NA	NA	NA	55	NR_040369	100503147	Mm.91961	NR_040369	ENSMUSG00000086006	Gm13293	OTTMUSG00000011311	predicted gene 13293	ncRNA	0.020000	0.462687	
mm_143771.1	chr17	81670111	81670311	-	1	NA	NA	NA	68176	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.165000	0.815920	
mm_100070.1	chr11	115419989	115420189	+	1	NA	NA	NA	-37	NM_183285	70382	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	0.130000	0.761194	
mm_161823.1	chr17	72604097	72604297	-	1	NA	NA	NA	110	NM_007439	11682	Mm.311854	NM_007439	ENSMUSG00000055471	Alk	CD246|Tcrz	anaplastic lymphoma kinase	protein-coding	0.060000	0.621891	
mm_142612.1	chr17	46857572	46857772	-	1	NA	NA	NA	-26259	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.115000	0.676617	-95(GCCTTTTAATGA,-,0.00)
mm_107581.1	chr12	44525621	44525821	+	1	NA	NA	NA	196836	NM_001146031	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.025000	0.492537	
mm_152631.1	chr19	12501392	12501592	-	1	NA	NA	NA	504	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.155000	0.781095	
mm_152944.1	chr19	28963778	28963978	-	1	NA	NA	NA	-42	NM_028922	74411	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	0.080000	0.661692	
mm_55461.1	chr6	67534638	67534838	-	1	NA	NA	NA	1084	NM_020047	56753	Mm.439913	NM_020047	ENSMUSG00000051397	Tacstd2	C80403|EGP-1|GA733-1|Ly97|TROP2	tumor-associated calcium signal transducer 2	protein-coding	0.025000	0.517413	
mm_94192.1	chr10	128999248	128999448	-	1	NA	NA	NA	9434	NM_146861	18373	Mm.377111	NM_146861	ENSMUSG00000069430	Olfr9	MOR269-3	olfactory receptor 9	protein-coding	0.010000	0.457711	-45(CTCCCTAAAAAG,-,0.00),-43(CCCTAAAAAGAG,+,0.00),-34(GAGTATAAAAGA,-,0.00)
mm_127983.1	chr15	12514580	12514780	-	1	NA	NA	NA	77876	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.020000	0.527363	
mm_122317.1	chr14	36919457	36919657	-	1	NA	NA	NA	-22	NM_001347503	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.015000	0.358209	
mm_88084.1	chr10	68137689	68137889	+	1	NA	NA	NA	140937	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.025000	0.507463	
mm_152107.1	chr19	6934105	6934305	-	1	NA	NA	NA	310	NM_008431	16528	Mm.12894	NM_008431	ENSMUSG00000024957	Kcnk4	MLZ-622|TRAAK|TRAAKt|Tex40	potassium channel, subfamily K, member 4	protein-coding	0.095000	0.716418	
mm_114961.1	chr13	97071495	97071695	+	1	NA	NA	NA	-48	NM_001100458	320557	Mm.458280	NM_001100458	ENSMUSG00000041817	Fam169a	B230112C05Rik|SLAP75	family with sequence similarity 169, member A	protein-coding	0.220000	0.840796	
mm_65245.1	chr7	19831786	19831986	-	1	NA	NA	NA	-9131	NM_033601	12051	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.025000	0.572139	
mm_161012.1	chr11	118911284	118911484	-	1	NA	NA	NA	213	NM_001285437	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.005000	0.557214	
mm_156581.1	chrX	152026459	152026659	+	1	NA	NA	NA	10131	NM_019710	24061	Mm.482095	NM_019710	ENSMUSG00000041133	Smc1a	5830426I24Rik|SMC-1A|Sb1.8|Smc1|Smc1alpha|Smc1l1|Smcb|mKIAA0178	structural maintenance of chromosomes 1A	protein-coding	0.030000	0.502488	30(CTCTTTAAACTC,+,0.00)
mm_79332.1	chr9	53340992	53341192	+	1	NA	NA	NA	39422	NM_176846	320051	Mm.277540	NM_176846	ENSMUSG00000034584	Exph5	AC079869.22gm5|B130009M24Rik|E030050P12|Kiaa0624|Slac2b|slac2-b	exophilin 5	protein-coding	0.040000	0.537313	
mm_107383.1	chr12	33147608	33147808	+	1	NA	NA	NA	22	NM_028139	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.105000	0.666667	
mm_15242.1	chr2	154657049	154657249	+	1	NA	NA	NA	123	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.135000	0.781095	
mm_114054.1	chr13	54366337	54366537	+	1	NA	NA	NA	-4912	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.005000	0.393035	
mm_95440.1	chr11	50225384	50225584	+	1	NA	NA	NA	149	NM_145926	103534	Mm.86759	NM_145926	ENSMUSG00000036620	Mgat4b	AA407995|GnTIVb	mannoside acetylglucosaminyltransferase 4, isoenzyme B	protein-coding	0.120000	0.805970	
mm_25759.1	chr3	123690923	123691123	+	1	NA	NA	NA	-171	NR_121616	83398	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	0.110000	0.716418	
mm_165010.1	chr19	25406960	25407160	+	1	NA	NA	NA	-98646	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.045000	0.666667	
mm_166456.1	chr5	138170880	138171080	-	1	NA	NA	NA	882	NM_008568	17220	Mm.378965	NM_008568	ENSMUSG00000029730	Mcm7	AI747533|Mcmd7|mCDC47	minichromosome maintenance complex component 7	protein-coding	0.065000	0.601990	
mm_163677.1	chr13	87048209	87048409	+	1	NA	NA	NA	-1001514	NM_007749	12867	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit VIIc	protein-coding	0.005000	0.432836	-83(GTGTTTAAAAAA,-,0.00)
mm_30366.1	chr3	152108654	152108854	-	1	NA	NA	NA	57146	NM_016867	54120	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.000000	0.462687	
mm_81628.1	chr9	110849399	110849599	+	1	NA	NA	NA	4993	NM_183103	74306	Mm.87419	NM_183103	ENSMUSG00000049719	Prss46	1700112C13Rik|79H19B|Tessp6	protease, serine 46	protein-coding	0.015000	0.532338	
mm_104412.1	chr11	94601874	94602074	-	1	NA	NA	NA	-188	NM_153807	264895	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0.075000	0.716418	
mm_91085.1	chr10	19015107	19015307	-	1	NA	NA	NA	203	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.130000	0.756219	
mm_70751.1	chr8	19535735	19535935	+	1	NA	NA	NA	40738	NM_139220	246080	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	0.015000	0.547264	
mm_7804.1	chr1	131526412	131526612	-	1	NA	NA	NA	849	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.100000	0.736318	
mm_29957.1	chr3	133234792	133234992	-	1	NA	NA	NA	-3	NM_029953	77669	Mm.98630	NM_029953	ENSMUSG00000040969	Arhgef38	9130221D24Rik|D630013G24Rik	Rho guanine nucleotide exchange factor (GEF) 38	protein-coding	0.020000	0.552239	
mm_39228.1	chr4	156228421	156228621	-	1	NA	NA	NA	21	NM_001008233	231002	Mm.423124	NM_001008233	ENSMUSG00000078485	Plekhn1	BC025458	pleckstrin homology domain containing, family N member 1	protein-coding	0.035000	0.656716	
mm_6935.1	chr1	85598709	85598909	-	1	NA	NA	NA	1	NM_030194	109032	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|ENSMUSG00000075603|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.030000	0.557214	
mm_65888.1	chr7	29943652	29943852	-	1	NA	NA	NA	8141	NM_178384	72723	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77	zinc finger protein 74	protein-coding	0.015000	0.417910	
mm_23009.1	chr3	34196684	34196884	+	1	NA	NA	NA	-115430	NM_026332	67713	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.020000	0.472637	-68(AGCTTTTAAAGC,-,0.00),-67(GCTTTTAAAGCT,+,0.00),-43(GACTCTAAATGC,-,0.00)
mm_3351.1	chr1	138159132	138159332	+	1	NA	NA	NA	15894	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.005000	0.452736	
mm_47148.1	chr5	120560817	120561017	-	1	NA	NA	NA	27696	NM_145853	252972	Mm.114054	NM_145853	ENSMUSG00000032741	Tpcn1	5730403B01Rik|Tpc1|mKIAA1169	two pore channel 1	protein-coding	0.020000	0.462687	
mm_67825.1	chr7	98283996	98284196	-	1	NA	NA	NA	25431	NM_025408	66190	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca	alkaline ceramidase 3	protein-coding	0.005000	0.268657	
mm_24729.1	chr3	95282868	95283068	+	1	NA	NA	NA	33	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.075000	0.646766	
mm_103479.1	chr11	76494805	76495005	-	1	NA	NA	NA	-410	NM_001346670	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.105000	0.696517	
mm_70810.1	chr8	23039466	23039666	+	1	NA	NA	NA	4467	NM_001277284	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.015000	0.482587	
mm_136693.1	chr17	6978875	6979075	+	1	NA	NA	NA	115	NM_026611	68195	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	0.120000	0.741294	
mm_54976.1	chr6	48739114	48739314	-	1	NA	NA	NA	167	NM_008376	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.030000	0.582090	
mm_146759.1	chr18	16808547	16808747	-	1	NA	NA	NA	599	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.100000	0.636816	
mm_154897.1	chrX	20871019	20871219	+	1	NA	NA	NA	953	NM_001294280	21857	Mm.8245	NM_011593	ENSMUSG00000001131	Timp1	Clgi|EPA|TIMP-1|TPA-S1|Timp	tissue inhibitor of metalloproteinase 1	protein-coding	0.005000	0.532338	
mm_1437.1	chr1	67211180	67211380	+	1	NA	NA	NA	88253	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.000000	0.363184	
mm_53607.1	chr6	138422141	138422341	+	1	NA	NA	NA	-864	NR_126073	319702	Mm.403785	NR_126072	ENSMUSG00000089957	A830011K09Rik	-	RIKEN cDNA A830011K09 gene	ncRNA	0.025000	0.492537	
mm_56018.1	chr6	86526102	86526302	-	1	NA	NA	NA	-37	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.130000	0.696517	
mm_66678.1	chr7	45784929	45785129	-	1	NA	NA	NA	-351	NM_001290990	381983	Mm.44928	NM_001005511	ENSMUSG00000062044	Lmtk3	BC059845|aatyk3	lemur tyrosine kinase 3	protein-coding	0.030000	0.552239	
mm_150955.1	chr19	46367883	46368083	+	1	NA	NA	NA	11103	NM_029186	75146	Mm.159290	NM_029186	ENSMUSG00000025227	Mfsd13a	4930449A08Rik|4930538D17Rik|Tmem180	major facilitator superfamily domain containing 13a	protein-coding	0.035000	0.597015	
mm_39965.1	chr5	32138631	32138831	+	1	NA	NA	NA	2259	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.015000	0.492537	
mm_158852.1	chrX	169994004	169994204	-	1	NA	NA	NA	-15187	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.125000	0.731343	
mm_19221.1	chr2	84650604	84650804	-	1	NA	NA	NA	36	NM_001085449	12388	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.005000	0.552239	
mm_117951.1	chr13	99441631	99441831	-	1	NA	NA	NA	-28905	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.040000	0.532338	
mm_110748.1	chr12	69978971	69979171	-	1	NA	NA	NA	7931	NM_022028	64010	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0.010000	0.303483	
mm_12892.1	chr2	84798309	84798509	+	1	NA	NA	NA	-419	NM_019949	56791	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.030000	0.532338	
mm_149896.1	chr19	25505547	25505747	+	1	NA	NA	NA	-59	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.055000	0.562189	
mm_130384.1	chr15	97856872	97857072	-	1	NA	NA	NA	-12470	NM_001204278	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.010000	0.567164	
mm_48992.1	chr6	4756316	4756516	+	1	NA	NA	NA	9110	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.537313	
mm_156400.1	chrX	139808541	139808741	+	1	NA	NA	NA	7833	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.020000	0.522388	
mm_97040.1	chr11	72305409	72305609	+	1	NA	NA	NA	3880	NM_001037713	327959	Mm.291131	NM_001037713	ENSMUSG00000040483	Xaf1	Fbox39	XIAP associated factor 1	protein-coding	0.000000	0.492537	
mm_26948.1	chr3	20270210	20270410	-	1	NA	NA	NA	5423	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.010000	0.343284	
mm_107393.1	chr12	33314292	33314492	+	1	NA	NA	NA	11877	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.025000	0.597015	
mm_163112.1	chr11	70657658	70657858	+	1	NA	NA	NA	582	NM_007933	13808	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.005000	0.492537	-19(CTTTTTATGGGG,+,0.00),32(GACTCTTAAAAG,-,0.00),33(ACTCTTAAAAGG,-,0.00),34(CTCTTAAAAGGG,+,0.00),35(TCTTAAAAGGGC,+,0.00)
mm_157117.1	chrX	9439917	9440117	-	1	NA	NA	NA	29307	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.402985	
mm_31358.1	chr4	47208171	47208371	+	1	NA	NA	NA	259	NM_009928	12819	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.140000	0.746269	
mm_172440.1	chr7	29965497	29965697	-	1	NA	NA	NA	-13704	NM_178384	72723	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77	zinc finger protein 74	protein-coding	0.055000	0.577114	
mm_108482.1	chr12	83663819	83664019	+	1	NA	NA	NA	-24644	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.015000	0.348259	
mm_92993.1	chr10	86703484	86703684	-	1	NA	NA	NA	1860	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.010000	0.398010	
mm_139908.1	chr17	70875711	70875911	+	1	NA	NA	NA	-22279	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.020000	0.457711	
mm_76240.1	chr8	83577944	83578144	-	1	NA	NA	NA	11286	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.010000	0.373134	
mm_65584.1	chr7	27310346	27310546	-	1	NA	NA	NA	23202	NM_001113549	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.030000	0.577114	
mm_22019.1	chr2	167988179	167988379	-	1	NA	NA	NA	22314	NM_001080708	69553	Mm.68454	NM_001080708	ENSMUSG00000074577	Fam65c	2310033K02Rik|Gm124	family with sequence similarity 65, member C	protein-coding	0.010000	0.462687	
mm_163676.1	chr13	85126765	85126965	+	1	NA	NA	NA	-62520	NM_001347587	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0.020000	0.383085	-3(GGGTTTATGAGG,-,0.00)
mm_104647.1	chr11	97547113	97547313	-	1	NA	NA	NA	27913	NM_018873	56013	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.125000	0.746269	
mm_66961.1	chr7	62463174	62463374	-	1	NA	NA	NA	1236	NM_013788	27412	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	0.050000	0.457711	
mm_6420.1	chr1	73905261	73905461	-	1	NA	NA	NA	-40895	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.000000	0.547264	
mm_34467.1	chr4	148140893	148141093	+	1	NA	NA	NA	503	NM_027985	71890	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding	0.055000	0.567164	61(GGATTTAAAAAC,-,0.00)
mm_167763.1	chr9	110422808	110423008	-	1	NA	NA	NA	3100	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.000000	0.477612	-76(TCTCTTATAGGC,+,0.00),-28(CCCCATTAAGGG,-,0.00)
mm_73313.1	chr8	105178378	105178578	+	1	NA	NA	NA	7804	NM_001161458	12400	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0.000000	0.313433	
mm_123436.1	chr14	64576026	64576226	-	1	NA	NA	NA	-11989	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA	0.015000	0.457711	
mm_107547.1	chr12	40794165	40794365	+	1	NA	NA	NA	-229825	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.030000	0.457711	
mm_8465.1	chr1	153332664	153332864	-	1	NA	NA	NA	22	NM_010683	226519	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	0.115000	0.726368	
mm_61598.1	chr7	80026258	80026458	+	1	NA	NA	NA	130	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.110000	0.766169	
mm_126877.1	chr15	89425192	89425392	+	1	NA	NA	NA	570	NM_009948	12895	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	0.040000	0.567164	
mm_2207.1	chr1	89580195	89580395	+	1	NA	NA	NA	103597	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.155000	0.746269	
mm_9888.1	chr1	186689289	186689489	-	1	NA	NA	NA	16600	NM_009367	21808	Mm.18213	NM_009367	ENSMUSG00000039239	Tgfb2	BB105277|Tgf-beta2|Tgfb-2	transforming growth factor, beta 2	protein-coding	0.005000	0.427861	
mm_63541.1	chr7	128062541	128062741	+	1	NA	NA	NA	1	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.010000	0.502488	
mm_47836.1	chr5	134313704	134313904	-	1	NA	NA	NA	956	NM_001080746	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.125000	0.681592	
mm_75436.1	chr8	47323071	47323271	-	1	NA	NA	NA	29177	NM_175162	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.010000	0.557214	-35(CACTATAAAAGG,-,0.00)
mm_94533.1	chr11	9118527	9118727	+	1	NA	NA	NA	120	NM_001159402	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.045000	0.606965	-35(TCCTTTTAAAAG,-,0.00),-34(CCTTTTAAAAGC,+,0.00),-34(CCTTTTAAAAGC,-,0.00),-33(CTTTTAAAAGCT,+,0.00),74(GCCTATATAGGT,+,0.00),74(GCCTATATAGGT,-,0.00)
mm_11309.1	chr2	30266745	30266945	+	1	NA	NA	NA	26	NM_001252570	227696	Mm.297949	NM_172267	ENSMUSG00000079484	Phyhd1	-	phytanoyl-CoA dioxygenase domain containing 1	protein-coding	0.005000	0.527363	
mm_123366.1	chr14	63164855	63165055	-	1	NA	NA	NA	14623	NM_010191	14137	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	0.040000	0.631841	
mm_133747.1	chr16	94328302	94328502	+	1	NA	NA	NA	-20	NM_133229	170765	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	0.095000	0.691542	-2(GTTTTTAAACCT,+,0.00)
mm_153773.1	chr19	45742760	45742960	-	1	NA	NA	NA	24	NM_001166361	14179	Mm.4012	NM_010205	ENSMUSG00000025219	Fgf8	Aigf|Fgf-8	fibroblast growth factor 8	protein-coding	0.105000	0.741294	
mm_48234.1	chr5	137720603	137720803	-	1	NA	NA	NA	19295	NM_175521	243300	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	0.030000	0.477612	
mm_61123.1	chr7	55768161	55768361	+	1	NA	NA	NA	77	NM_178706	233274	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding	0.005000	0.547264	
mm_124308.1	chr14	103099425	103099625	-	1	NA	NA	NA	-16	NM_015822	50789	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.165000	0.756219	
mm_38978.1	chr4	150914341	150914541	-	1	NA	NA	NA	-4520	NM_020569	57320	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.105000	0.661692	
mm_66367.1	chr7	43533102	43533302	-	1	NA	NA	NA	-31	NM_021293	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.010000	0.467662	
mm_165109.1	chr19	57698082	57698282	+	1	NA	NA	NA	87148	NM_181415	226255	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0.015000	0.383085	
mm_37786.1	chr4	130275466	130275666	-	1	NA	NA	NA	20	NM_172702	230779	Mm.45132	NM_172702	ENSMUSG00000023232	Serinc2	2310004K20Rik|AW121759|FKSG84|TDE2|Tde2l	serine incorporator 2	protein-coding	0.095000	0.751244	
mm_84310.1	chr9	63667459	63667659	-	1	NA	NA	NA	64904	NM_025857	66939	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.035000	0.577114	
mm_84281.1	chr9	62811811	62812011	-	1	NA	NA	NA	-263	NM_010193	14155	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.115000	0.671642	
mm_41641.1	chr5	98031003	98031203	+	1	NA	NA	NA	-141	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.105000	0.716418	
mm_52696.1	chr6	119175170	119175370	+	1	NA	NA	NA	17	NM_001033379	319618	Mm.250197	NM_001033379	ENSMUSG00000041477	Dcp1b	B930050E02Rik	decapping mRNA 1B	protein-coding	0.110000	0.711443	
mm_127195.1	chr15	99055806	99056006	+	1	NA	NA	NA	732	NM_001163589	19132	Mm.2477	NM_013639	ENSMUSG00000023484	Prph	Prph1	peripherin	protein-coding	0.035000	0.616915	88(CCTTTTAGATCC,+,0.00)
mm_105346.1	chr11	102997510	102997710	-	1	NA	NA	NA	2311	NR_105896	102466988		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.015000	0.567164	
mm_19468.1	chr2	92458794	92458994	-	1	NA	NA	NA	900	NM_211358	228368	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.020000	0.562189	
mm_150174.1	chr19	32595331	32595531	+	1	NA	NA	NA	-284	NM_001201470	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.045000	0.527363	
mm_22495.1	chr3	6620472	6620672	+	1	NA	NA	NA	-129	NM_027048	69347	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	0.025000	0.467662	
mm_133573.1	chr16	91406246	91406446	+	1	NA	NA	NA	111	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.110000	0.781095	
mm_144539.1	chr18	25754405	25754605	+	1	NA	NA	NA	-522	NM_001174074	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.050000	0.467662	
mm_30236.1	chr3	146149577	146149777	-	1	NA	NA	NA	-156	NM_026656	68279	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.030000	0.587065	
mm_151571.1	chr19	60811497	60811697	+	1	NA	NA	NA	27	NM_001167829	67894	Mm.26148	NM_026437	ENSMUSG00000024993	Fam45a	1810055E12Rik	family with sequence similarity 45, member A	protein-coding	0.060000	0.661692	
mm_24043.1	chr3	87846894	87847094	+	1	NA	NA	NA	239	NM_021309	27371	Mm.86361	NM_021309	ENSMUSG00000028071	Sh2d2a	Lad|Ribp|Tsad	SH2 domain containing 2A	protein-coding	0.020000	0.562189	-40(CCTTTTCGAGAC,+,0.00)
mm_155964.1	chrX	106027212	106027412	+	1	NA	NA	NA	88	NM_009726	11977	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	0.090000	0.681592	
mm_97110.1	chr11	74650473	74650673	+	1	NA	NA	NA	1078	NM_001081158	74148	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.005000	0.557214	
mm_52710.1	chr6	119479439	119479639	+	1	NA	NA	NA	-129	NM_133940	101358	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.190000	0.820896	
mm_1272.1	chr1	63323853	63324053	+	1	NA	NA	NA	50684	NM_001267872	73884	Mm.86986	NM_028673	ENSMUSG00000027520	Zdbf2	4930431J08Rik|9330107J05Rik	zinc finger, DBF-type containing 2	protein-coding	0.025000	0.497512	
mm_80874.1	chr9	98955338	98955538	+	1	NA	NA	NA	-128	NR_003248	768252	Mm.129645	NR_003248	ENSMUSG00000097072	Foxl2os	ENSMUSG00000074122	forkhead box L2, opposite strand	ncRNA	0.085000	0.731343	
mm_134500.1	chr16	18876504	18876704	-	1	NA	NA	NA	33	NM_010922	18100	Mm.20918	NM_010922	ENSMUSG00000022706	Mrpl40	Nlvcf	mitochondrial ribosomal protein L40	protein-coding	0.115000	0.736318	
mm_67193.1	chr7	73964043	73964243	-	1	NA	NA	NA	49539	NM_009181	20450	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0.005000	0.452736	
mm_66004.1	chr7	30562845	30563045	-	1	NA	NA	NA	239	NM_025498	66340	Mm.86557	NM_025498	ENSMUSG00000036835	Psenen	1700023M09Rik|Pen-2	presenilin enhancer gamma secretase subunit	protein-coding	0.055000	0.537313	
mm_20553.1	chr2	131071171	131071371	-	1	NA	NA	NA	-7457	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.030000	0.592040	
mm_137737.1	chr17	29360815	29361015	+	1	NA	NA	NA	1	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.015000	0.577114	
mm_172715.1	chr8	70527690	70527890	+	1	NA	NA	NA	47	NM_010223	14232	Mm.141864	NM_010223	ENSMUSG00000019428	Fkbp8	38kDa|FKBP-38|FKBP-8|Fkbp38	FK506 binding protein 8	protein-coding	0.120000	0.741294	
mm_48807.1	chr5	148969749	148969949	-	1	NA	NA	NA	19599	NR_040686	71473	Mm.90306	NR_040686	ENSMUSG00000079069	8430423G03Rik	-	RIKEN cDNA 8430423G03 gene	ncRNA	0.025000	0.572139	
mm_137457.1	chr17	26561454	26561654	+	1	NA	NA	NA	42	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.135000	0.766169	
mm_99466.1	chr11	102435649	102435849	+	1	NA	NA	NA	5427	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.010000	0.572139	
mm_61682.1	chr7	80994790	80994990	+	1	NA	NA	NA	1206	NM_178707	233410	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	8430405N24|A730014M16Rik|Znf592|mKIAA0211	zinc finger protein 592	protein-coding	0.005000	0.437811	
mm_128402.1	chr15	44427770	44427970	-	1	NA	NA	NA	-241	NM_175009	223527	Mm.291828	NM_175009	ENSMUSG00000022338	Eny2	1810057B09Rik|6720481I12|DC6|Ey2	enhancer of yellow 2 homolog (Drosophila)	protein-coding	0.055000	0.522388	
mm_56190.1	chr6	88601206	88601406	-	1	NA	NA	NA	26142	NM_001278671	74589	Mm.196226	NM_029013	ENSMUSG00000033182	Kbtbd12	4833415F11Rik|4933428M03Rik|Klhdc6	kelch repeat and BTB (POZ) domain containing 12	protein-coding	0.005000	0.417910	
mm_50543.1	chr6	49046132	49046332	+	1	NA	NA	NA	9714	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.005000	0.393035	
mm_134830.1	chr16	26099648	26099848	-	1	NA	NA	NA	6036	NM_173379	210530	Mm.326869	NM_173379	ENSMUSG00000038168	P3h2	4832416N06|AW553532|Leprel1|Mlat4	prolyl 3-hydroxylase 2	protein-coding	0.005000	0.467662	5(CCACATAAAGGG,-,0.00)
mm_108169.1	chr12	76404184	76404384	+	1	NA	NA	NA	-86	NM_008301	15512	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0.065000	0.641791	
mm_30076.1	chr3	137997677	137997877	-	1	NA	NA	NA	-16228	NM_001310753	26377	Mm.254835	NM_011932	ENSMUSG00000028159	Dapp1	Bam32	dual adaptor for phosphotyrosine and 3-phosphoinositides 1	protein-coding	0.010000	0.393035	
mm_21684.1	chr2	164431151	164431351	-	1	NA	NA	NA	11937	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.045000	0.577114	
mm_118557.1	chr14	17962711	17962911	+	1	NA	NA	NA	-18833	NM_009380	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.005000	0.457711	
mm_148201.1	chr18	79109846	79110046	-	1	NA	NA	NA	-555	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.145000	0.791045	
mm_91919.1	chr10	60299750	60299950	-	1	NA	NA	NA	15389	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.045000	0.582090	
mm_154797.1	chrX	13280922	13281122	+	1	NA	NA	NA	0	NM_010028	13205	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	0.095000	0.616915	-35(CGGTATATAAGG,-,0.00)
mm_52390.1	chr6	113283765	113283965	+	1	NA	NA	NA	1558	NM_170673	211232	Mm.65597	NM_170673	ENSMUSG00000030270	Cpne9	A730016F12Rik|mKIAA4217	copine family member IX	protein-coding	0.020000	0.532338	
mm_16740.1	chr2	9377859	9378059	-	1	NA	NA	NA	188444	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.010000	0.412935	-67(GTCTTTTAAAGC,-,0.00),-66(TCTTTTAAAGCA,+,0.00)
mm_28365.1	chr3	89871649	89871849	-	1	NA	NA	NA	40379	NM_172530	214547	Mm.225	NM_172530	ENSMUSG00000046280	She	9430022A14	src homology 2 domain-containing transforming protein E	protein-coding	0.020000	0.492537	
mm_28720.1	chr3	95673719	95673919	-	1	NA	NA	NA	14098	NM_144899	229595	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.010000	0.527363	
mm_23385.1	chr3	56575422	56575622	+	1	NA	NA	NA	-391821	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.010000	0.363184	
mm_107521.1	chr12	40461030	40461230	+	1	NA	NA	NA	15077	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.005000	0.348259	
mm_169226.1	chr13	66873963	66874163	+	1	NA	NA	NA	31287	NM_026219	67530	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	0.020000	0.383085	
mm_13385.1	chr2	103957899	103958099	+	1	NA	NA	NA	4	NM_001142337	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.010000	0.447761	
mm_143671.1	chr17	79934494	79934694	-	1	NA	NA	NA	-38471	NM_001286647	56298	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.055000	0.587065	
mm_85511.1	chr9	106247808	106248008	-	1	NA	NA	NA	46	NM_020559	11655	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	0.130000	0.691542	
mm_41295.1	chr5	90464022	90464222	+	1	NA	NA	NA	3252	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.482587	
mm_143128.1	chr17	57213730	57213930	-	1	NA	NA	NA	3398	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.035000	0.577114	
mm_136620.1	chr17	5493076	5493276	+	1	NA	NA	NA	576	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.100000	0.696517	
mm_60858.1	chr7	45872729	45872929	+	1	NA	NA	NA	-11	NM_133950	68137	Mm.298433	NM_133950	ENSMUSG00000002778	Kdelr1	8030486F04Rik|AW215843|Erd2.1	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 1	protein-coding	0.050000	0.661692	
mm_105480.1	chr11	105938876	105939076	-	1	NA	NA	NA	5171	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.020000	0.606965	
mm_2218.1	chr1	89871022	89871222	+	1	NA	NA	NA	60054	NM_010262	14472	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.025000	0.552239	-23(TCCTATAAAGGA,-,0.00)
mm_155175.1	chrX	53607869	53608069	+	1	NA	NA	NA	47	NM_028375	72865	Mm.158897	NM_028375	ENSMUSG00000051851	Cxx1c	2900027G03Rik|Mar8.1|Mart8a	CAAX box 1C	protein-coding	0.045000	0.587065	
mm_15880.1	chr2	164837996	164838196	+	1	NA	NA	NA	4323	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.030000	0.532338	
mm_26495.1	chr3	145576131	145576331	+	1	NA	NA	NA	15	NM_001346521	229937	Mm.24586	NM_001081094	ENSMUSG00000074182	Znhit6	2410019A14Rik	zinc finger, HIT type 6	protein-coding	0.105000	0.606965	
mm_32256.1	chr4	102570534	102570734	+	1	NA	NA	NA	574	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.055000	0.646766	
mm_39653.1	chr5	24708971	24709171	+	1	NA	NA	NA	21609	NM_001081441	269633	Mm.392539	NM_026621	ENSMUSG00000055235	Wdr86	2810046M22Rik|BC059069	WD repeat domain 86	protein-coding	0.040000	0.497512	
mm_170323.1	chr18	4199150	4199350	-	1	NA	NA	NA	33418	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.080000	0.611940	
mm_14791.1	chr2	145860641	145860841	+	1	NA	NA	NA	-42500	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.060000	0.631841	
mm_18071.1	chr2	42643725	42643925	-	1	NA	NA	NA	9773	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding	0.000000	0.343284	
mm_106881.1	chr12	8011581	8011781	+	1	NA	NA	NA	34004	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.020000	0.422886	
mm_161720.1	chr17	27512595	27512795	-	1	NA	NA	NA	-9162	NM_001291045	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.095000	0.756219	
mm_18959.1	chr2	76794451	76794651	-	1	NA	NA	NA	119236	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.025000	0.457711	
mm_11768.1	chr2	38585984	38586184	+	1	NA	NA	NA	57822	NM_011187	19177	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0.015000	0.492537	
mm_85320.1	chr9	101251689	101251889	-	1	NA	NA	NA	43	NM_001161362	235542	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0.140000	0.791045	
mm_117763.1	chr13	96132578	96132778	-	1	NA	NA	NA	-101	NM_029210	75209	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	0.105000	0.711443	
mm_28622.1	chr3	95042461	95042661	-	1	NA	NA	NA	53	NM_001282017	19185	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	0.065000	0.616915	
mm_37995.1	chr4	133660787	133660987	-	1	NA	NA	NA	11760	NM_001145955	230801	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.015000	0.497512	
mm_14532.1	chr2	132781355	132781555	+	1	NA	NA	NA	177	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.080000	0.666667	
mm_100247.1	chr11	117308047	117308247	+	1	NA	NA	NA	-23568	NM_017380	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.020000	0.582090	
mm_56837.1	chr6	117179269	117179469	-	1	NA	NA	NA	10834	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.010000	0.512438	
mm_110180.1	chr12	27337445	27337645	-	1	NA	NA	NA	5173	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.005000	0.368159	
mm_141957.1	chr17	35117755	35117955	-	1	NA	NA	NA	-2455	NM_148939	266614	Mm.104680	NM_148939	ENSMUSG00000043807	Ly6g5b	-	lymphocyte antigen 6 complex, locus G5B	protein-coding	0.040000	0.592040	
mm_109319.1	chr12	109561518	109561718	+	1	NA	NA	NA	-2074	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.040000	0.457711	
mm_21996.1	chr2	167689125	167689325	-	1	NA	NA	NA	310	NM_001287738	12608	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.195000	0.771144	
mm_163851.1	chr14	19418216	19418416	-	1	NA	NA	NA	184271	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.353234	
mm_52154.1	chr6	98004982	98005182	+	1	NA	NA	NA	13299	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.010000	0.368159	
mm_2545.1	chr1	107528909	107529109	+	1	NA	NA	NA	6	NM_198028	241197	Mm.123919	NM_198028	ENSMUSG00000092572	Serpinb10	9830131G07|BB233602|Serpinb10-ps	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10	protein-coding	0.000000	0.383085	
mm_118309.1	chr13	113101786	113101986	-	1	NA	NA	NA	-905	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.025000	0.477612	
mm_96501.1	chr11	68432041	68432241	+	1	NA	NA	NA	16	NM_177320	320207	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik	phosphoinositide-3-kinase, regulatory subunit 5, p101	protein-coding	0.075000	0.721393	
mm_54289.1	chr6	29260753	29260953	-	1	NA	NA	NA	-11635	NM_001190461	69573	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.010000	0.407960	
mm_77665.1	chr8	124716639	124716839	-	1	NA	NA	NA	5236	NM_145607	234875	Mm.38436	NM_145607	ENSMUSG00000037300	Ttc13	BC017545	tetratricopeptide repeat domain 13	protein-coding	0.025000	0.552239	
mm_67780.1	chr7	97332009	97332209	-	1	NA	NA	NA	-214	NM_001039039	622320	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	0.085000	0.721393	-35(TGGCCTTAAAGG,-,0.00),-34(GGCCTTAAAGGG,-,0.00),-33(GCCTTAAAGGGG,+,0.00),-32(CCTTAAAGGGGA,+,0.00)
mm_56495.1	chr6	99204865	99205065	-	1	NA	NA	NA	61550	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.005000	0.422886	79(CCTTTAATAGGA,+,0.00)
mm_150535.1	chr19	39296568	39296768	+	1	NA	NA	NA	9583	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.020000	0.333333	
mm_33154.1	chr4	125490596	125490796	+	1	NA	NA	NA	-135	NM_001081097	14807	Mm.40896	NM_001081097	ENSMUSG00000001985	Grik3	9630027E11|GluK3|GluR7-3|Glur-7|Glur7	glutamate receptor, ionotropic, kainate 3	protein-coding	0.165000	0.840796	
mm_148376.1	chr19	3205509	3205709	+	1	NA	NA	NA	-7906	NR_045304	70011	Mm.393871	NR_045304	ENSMUSG00000100969	1700030N03Rik	1700087C08Rik	RIKEN cDNA 1700030N03 gene	ncRNA	0.080000	0.592040	
mm_81106.1	chr9	106451988	106452188	+	1	NA	NA	NA	-1750	NM_021567	59092	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	0.000000	0.552239	
mm_45249.1	chr5	59985902	59986102	-	1	NA	NA	NA	0	NR_040683	71057	Mm.50817	NR_040682	ENSMUSG00000106013	4933402J10Rik	-	RIKEN cDNA 4933402J10 gene	ncRNA	0.000000	0.507463	
mm_60174.1	chr7	41599158	41599358	+	1	NA	NA	NA	-34273	NM_023363	67607	Mm.384626	NM_023363	ENSMUSG00000074165	Zfp788	2810426N06Rik|AI256342|AI605193	zinc finger protein 788	protein-coding	0.070000	0.582090	
mm_112424.1	chr13	4191117	4191317	+	1	NA	NA	NA	30	NM_013778	27384	Mm.27447	NM_013778	ENSMUSG00000021213	Akr1c13	mKIAA4014	aldo-keto reductase family 1, member C13	protein-coding	0.010000	0.472637	
mm_100573.1	chr11	120763037	120763237	+	1	NA	NA	NA	21067	NM_009053	19719	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.040000	0.601990	
mm_71599.1	chr8	54978799	54978999	+	1	NA	NA	NA	24171	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.000000	0.248756	
mm_10419.1	chr2	13580543	13580743	+	1	NA	NA	NA	6332	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.005000	0.388060	-13(CTTTTTATAGGA,+,0.00)
mm_131173.1	chr16	7069705	7069905	+	1	NA	NA	NA	-30	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.035000	0.527363	
mm_73591.1	chr8	109993822	109994022	+	1	NA	NA	NA	3486	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.025000	0.462687	
mm_35150.1	chr4	11966230	11966430	-	1	NA	NA	NA	120	NM_001098230	381511	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	0.120000	0.746269	
mm_39138.1	chr4	155222977	155223177	-	1	NA	NA	NA	-542	NM_011385	20481	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.185000	0.805970	
mm_9813.1	chr1	182019858	182020058	-	1	NA	NA	NA	22	NM_008680	13800	Mm.87759	NM_008680	ENSMUSG00000022995	Enah	Mena|NDPP-1|Ndpp1|WBP8	enabled homolog (Drosophila)	protein-coding	0.195000	0.840796	
mm_16818.1	chr2	11398432	11398632	-	1	NA	NA	NA	-32	NR_040615	77543	Mm.490670	NR_040615	ENSMUSG00000102674	8030442B05Rik	-	RIKEN cDNA 8030442B05 gene	ncRNA	0.015000	0.452736	
mm_13059.1	chr2	91115066	91115266	+	1	NA	NA	NA	-2978	NM_008653	17868	Mm.10728	NM_008653	ENSMUSG00000002100	Mybpc3	-	myosin binding protein C, cardiac	protein-coding	0.045000	0.577114	
mm_14506.1	chr2	132253269	132253469	+	1	NA	NA	NA	-189	NM_011045	18538	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0.080000	0.621891	
mm_79979.1	chr9	66918750	66918950	+	1	NA	NA	NA	855	NM_173413	235442	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.025000	0.527363	
mm_12155.1	chr2	62046441	62046641	+	1	NA	NA	NA	26	NM_033552	94229	Mm.314497	NM_033552	ENSMUSG00000026904	Slc4a10	NCBE|mKIAA4136	solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	protein-coding	0.020000	0.527363	
mm_159727.1	chr5	41821901	41822101	-	1	NA	NA	NA	22314	NM_001310601	665775	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0.015000	0.432836	
mm_34844.1	chr4	155409188	155409388	+	1	NA	NA	NA	98	NM_001166029	544678	Mm.472798	NM_177674	ENSMUSG00000078490	Cfap74	2010015L04Rik|A530045M11	cilia and flagella associated protein 74	protein-coding	0.065000	0.616915	
mm_58940.1	chr7	18245109	18245309	+	1	NA	NA	NA	-138	NM_153749	266815	Mm.106769	NM_153749	ENSMUSG00000054005	Mill1	5530400I18Rik	MHC I like leukocyte 1	protein-coding	0.005000	0.472637	
mm_17018.1	chr2	18997976	18998176	-	1	NA	NA	NA	45	NM_008845	18718	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.150000	0.805970	
mm_65266.1	chr7	19935398	19935598	-	1	NA	NA	NA	-14355	NM_027514	52118	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.035000	0.507463	
mm_127259.1	chr15	99704079	99704279	+	1	NA	NA	NA	1892	NM_031842	83797	Mm.273756	NM_031842	ENSMUSG00000023018	Smarcd1	AA407987|Baf60a|D15Kz1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	protein-coding	0.025000	0.532338	
mm_21630.1	chr2	164277201	164277401	-	1	NA	NA	NA	1006	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.020000	0.442786	
mm_120358.1	chr14	64093625	64093825	+	1	NA	NA	NA	29	NM_001193631	100504162	Mm.72752	NM_001193631	ENSMUSG00000052099	Prss51	1700007N14Rik	protease, serine 51	protein-coding	0.000000	0.527363	
mm_12628.1	chr2	74704731	74704931	+	1	NA	NA	NA	216	NM_001290731	15437	Mm.280673	NM_008276	ENSMUSG00000027102	Hoxd8	4921540P06Rik|AI047735|Hox-4.3|Hox-5.4	homeobox D8	protein-coding	0.140000	0.771144	-36(CCCCCTTTAAGG,-,0.00),-35(CCCCTTTAAGGC,-,0.00),-34(CCCTTTAAGGCT,+,0.00),-33(CCTTTAAGGCTG,+,0.00)
mm_76011.1	chr8	72988430	72988630	-	1	NA	NA	NA	-27982	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	0.005000	0.303483	
mm_166932.1	chr7	35119233	35119433	+	1	NA	NA	NA	40	NM_007678	12606	Mm.349667	NM_007678	ENSMUSG00000034957	Cebpa	C/ebpalpha|CBF-A|Cebp	CCAAT/enhancer binding protein (C/EBP), alpha	protein-coding	0.130000	0.726368	-73(CTCTATAAAAGC,-,0.00)
mm_104017.1	chr11	85524848	85525048	-	1	NA	NA	NA	171784	NM_001166643	192197	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.030000	0.487562	84(CCTTTACAAGAG,+,0.00)
mm_23409.1	chr3	58461018	58461218	+	1	NA	NA	NA	46398	NM_001081229	72033	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.010000	0.298507	
mm_159492.1	chr4	42756426	42756626	-	1	NA	NA	NA	-8	NM_011888	24047	Mm.6660	NM_011888	ENSMUSG00000071005	Ccl19	CKb11|ELC|MIP3B|Scya19|exodus-3	chemokine (C-C motif) ligand 19	protein-coding	0.025000	0.577114	
mm_169035.1	chr13	13437479	13437679	+	1	NA	NA	NA	-23	NM_010917	18073	Mm.4691	NM_010917	ENSMUSG00000005397	Nid1	A630025O17|Nid|entactin|entactin-1|nidogen-1	nidogen 1	protein-coding	0.080000	0.686567	
mm_511.1	chr1	37299765	37299965	+	1	NA	NA	NA	27	NM_001290797	269180	Mm.5294	NM_030266	ENSMUSG00000026113	Inpp4a	107kDa|9630012D15|D130048C09Rik|R74740	inositol polyphosphate-4-phosphatase, type I	protein-coding	0.105000	0.711443	
mm_14622.1	chr2	136772881	136773081	+	1	NA	NA	NA	59531	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.000000	0.442786	
mm_158671.1	chrX	157598318	157598518	-	1	NA	NA	NA	297	NM_172307	270669	Mm.37577	NM_172307	ENSMUSG00000046873	Mbtps2	9630032G22Rik|AI662535	membrane-bound transcription factor peptidase, site 2	protein-coding	0.120000	0.716418	
mm_4158.1	chr1	171029146	171029346	+	1	NA	NA	NA	10320	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.020000	0.477612	
mm_158020.1	chrX	95965111	95965311	-	1	NA	NA	NA	-8237	NM_152822	76130	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	0.020000	0.512438	
mm_131762.1	chr16	22891290	22891490	+	1	NA	NA	NA	-625	NR_075099	11625	Mm.197554	NM_013465	ENSMUSG00000022868	Ahsg	-	alpha-2-HS-glycoprotein	protein-coding	0.005000	0.567164	
mm_157217.1	chrX	13014065	13014265	-	1	NA	NA	NA	-27850	NR_038158	70489	Mm.383563	NR_038158	ENSMUSG00000087424	5730405O15Rik	-	RIKEN cDNA 5730405O15 gene	ncRNA	0.010000	0.427861	
mm_22957.1	chr3	32398365	32398565	+	1	NA	NA	NA	-32800	NM_009517	22401	Mm.35705	NM_009517	ENSMUSG00000027663	Zmat3	Wig1	zinc finger matrin type 3	protein-coding	0.010000	0.308458	19(GACTTTTTAAAG,-,0.00),21(CTTTTTAAAGGG,+,0.00),21(CTTTTTAAAGGG,-,0.00)
mm_107205.1	chr12	26443703	26443903	+	1	NA	NA	NA	12649	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.005000	0.427861	
mm_73175.1	chr8	95056561	95056761	+	1	NA	NA	NA	1558	NM_001042715	330830	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.020000	0.532338	
mm_73675.1	chr8	111536184	111536384	+	1	NA	NA	NA	-356	NM_001168622	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.090000	0.626866	
mm_145707.1	chr18	62922199	62922399	+	1	NA	NA	NA	-28	NM_133237	494504	Mm.391102	NM_133237	ENSMUSG00000071847	Apcdd1	AB023957|AU041258|Drapc1|EIG180	adenomatosis polyposis coli down-regulated 1	protein-coding	0.100000	0.736318	
mm_63343.1	chr7	126967440	126967640	+	1	NA	NA	NA	-8374	NM_026638	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.020000	0.577114	
mm_141572.1	chr17	32318913	32319113	-	1	NA	NA	NA	2225	NM_019774	56399	Mm.328945	NM_019774	ENSMUSG00000024045	Akap8	1200016A02Rik|AA673585|AKAP-8|AKAP95|AU015639	A kinase (PRKA) anchor protein 8	protein-coding	0.010000	0.452736	61(GTTCTTAAAGGC,+,0.00)
mm_107201.1	chr12	25335232	25335432	+	1	NA	NA	NA	206158	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.010000	0.522388	
mm_109533.1	chr12	111540120	111540320	+	1	NA	NA	NA	-726	NR_033168	100316932	Mm.484709	NR_033168	ENSMUSG00000064493	Snora28	MBI-13	small nucleolar RNA, H/ACA box 28	snoRNA	0.010000	0.407960	
mm_5487.1	chr1	36891587	36891787	-	1	NA	NA	NA	47840	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.015000	0.497512	
mm_140262.1	chr17	84626385	84626585	+	1	NA	NA	NA	-14	NM_172256	213575	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0.055000	0.616915	
mm_71725.1	chr8	61976727	61976927	+	1	NA	NA	NA	48740	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.005000	0.402985	
mm_138445.1	chr17	35135078	35135278	+	1	NA	NA	NA	0	NM_001252468	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.135000	0.696517	
mm_13099.1	chr2	91259772	91259972	+	1	NA	NA	NA	2543	NM_028733	80708	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	0.015000	0.542289	
mm_70526.1	chr8	12984275	12984475	+	1	NA	NA	NA	34957	NM_001159485	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.025000	0.542289	
mm_45022.1	chr5	38561569	38561769	-	1	NA	NA	NA	-74	NM_011715	22388	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0.165000	0.761194	-85(GACTATATATGG,-,0.00)
mm_126763.1	chr15	85859664	85859864	+	1	NA	NA	NA	57	NM_001168672	29870	Mm.20858	NM_013882	ENSMUSG00000022385	Gtse1	B99|Gtse-1	G two S phase expressed protein 1	protein-coding	0.105000	0.656716	
mm_162869.1	chr10	94036270	94036470	+	1	NA	NA	NA	369	NM_053072	13998	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	0.155000	0.791045	
mm_156369.1	chrX	139617290	139617490	+	1	NA	NA	NA	6770	NM_023270	66889	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	0.020000	0.412935	-87(CCTTTTAAATTG,+,0.00)
mm_134103.1	chr16	9995229	9995429	-	1	NA	NA	NA	-2796	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.070000	0.616915	
mm_31327.1	chr4	46450853	46451053	+	1	NA	NA	NA	27	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.180000	0.805970	
mm_62633.1	chr7	107639074	107639274	+	1	NA	NA	NA	32330	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.015000	0.457711	
mm_8853.1	chr1	162710409	162710609	-	1	NA	NA	NA	30047	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.015000	0.467662	
mm_60670.1	chr7	45017881	45018081	+	1	NA	NA	NA	-26	NM_009101	20130	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.080000	0.676617	
mm_85060.1	chr9	90243017	90243217	-	1	NA	NA	NA	27652	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.015000	0.542289	
mm_61246.1	chr7	65803889	65804089	+	1	NA	NA	NA	-63	NR_045301	100503969	Mm.383527	NR_045301		1810008I18Rik	-	RIKEN cDNA 1810008I18 gene	ncRNA	0.010000	0.482587	
mm_134302.1	chr16	15626175	15626375	-	1	NA	NA	NA	11125	NM_008565	17217	Mm.1500	NM_008565	ENSMUSG00000022673	Mcm4	19G|AI325074|AU045576|Cdc21|Mcmd4|mKIAA4003|mcdc21	minichromosome maintenance complex component 4	protein-coding	0.030000	0.412935	
mm_80831.1	chr9	97015868	97016068	+	1	NA	NA	NA	2387	NM_145134	211949	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0.010000	0.522388	
mm_92783.1	chr10	81291089	81291289	-	1	NA	NA	NA	78	NM_013769	27375	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.055000	0.646766	
mm_31531.1	chr4	55082387	55082587	+	1	NA	NA	NA	134542	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.025000	0.442786	
mm_40461.1	chr5	53614885	53615085	+	1	NA	NA	NA	24499	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.010000	0.477612	
mm_164052.1	chr14	103016949	103017149	-	1	NA	NA	NA	16754	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.015000	0.492537	
mm_24832.1	chr3	95658644	95658844	+	1	NA	NA	NA	23	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.110000	0.711443	
mm_10936.1	chr2	25468754	25468954	+	1	NA	NA	NA	895	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.010000	0.547264	
mm_13697.1	chr2	117121367	117121567	+	1	NA	NA	NA	396	NM_033524	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.175000	0.820896	
mm_157481.1	chrX	48173250	48173450	-	1	NA	NA	NA	26914	NM_028773	74131	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	0.005000	0.422886	
mm_154626.1	chrX	7728463	7728663	+	1	NA	NA	NA	-8	NM_138602	54637	Mm.28850	NM_138602	ENSMUSG00000031149	Praf2	AA986329|C78013|DXImx39e|JM4|Sfc20	PRA1 domain family 2	protein-coding	0.085000	0.636816	
mm_30738.1	chr4	14169880	14170080	+	1	NA	NA	NA	121329	NR_131155	100040030	Mm.366499	NR_131155		Gm2560	-	predicted gene 2560	ncRNA	0.015000	0.398010	
mm_55429.1	chr6	65779592	65779792	-	1	NA	NA	NA	730	NM_029549	70779	Mm.263355	NM_027547	ENSMUSG00000029913	Prdm5	4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2	PR domain containing 5	protein-coding	0.005000	0.447761	
mm_133615.1	chr16	91547735	91547935	+	1	NA	NA	NA	741	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.010000	0.442786	
mm_151352.1	chr19	55898169	55898369	+	1	NA	NA	NA	2948	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.005000	0.407960	73(CTGTATAAAGGG,-,0.00)
mm_37783.1	chr4	130275105	130275305	-	1	NA	NA	NA	15	NM_001253386	230779	Mm.45132	NM_172702	ENSMUSG00000023232	Serinc2	2310004K20Rik|AW121759|FKSG84|TDE2|Tde2l	serine incorporator 2	protein-coding	0.140000	0.766169	
mm_29164.1	chr3	106406000	106406200	-	1	NA	NA	NA	82	NM_178412	229688	Mm.261645	NM_178412	ENSMUSG00000027902	Chil6	BYm|Chil8	chitinase-like 6	protein-coding	0.000000	0.378109	-41(GCATTAAAAGCA,+,0.00),72(TTCTATAAAGGC,-,0.00)
mm_74146.1	chr8	123280877	123281077	+	1	NA	NA	NA	-26755	NM_028200	72325	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	0.020000	0.482587	
mm_156923.1	chrX	169220184	169220384	+	1	NA	NA	NA	-33075	NM_009666	11704	Mm.391342	NM_009666	ENSMUSG00000031354	Amelx	ALGN|AMGL|AMGX|Amel|Amg|LRAP|Rgsc888	amelogenin, X-linked	protein-coding	0.030000	0.587065	
mm_69810.1	chr7	141263448	141263648	-	1	NA	NA	NA	2876	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.015000	0.577114	
mm_135054.1	chr16	33787071	33787271	-	1	NA	NA	NA	-6866	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.005000	0.572139	
mm_106065.1	chr11	116132795	116132995	-	1	NA	NA	NA	-1767	NM_178802	338364	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0.015000	0.567164	
mm_152440.1	chr19	10738877	10739077	-	1	NA	NA	NA	-3	NM_007650	12507	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	0.000000	0.557214	
mm_68067.1	chr7	101868373	101868573	-	1	NA	NA	NA	2315	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.025000	0.542289	
mm_16685.1	chr2	6884463	6884663	-	1	NA	NA	NA	433	NM_010160	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.015000	0.452736	
mm_52764.1	chr6	120927074	120927274	+	1	NA	NA	NA	-10354	NM_007544	12122	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	0.005000	0.517413	
mm_127191.1	chr15	99030287	99030487	+	1	NA	NA	NA	496	NM_009448	22146	Mm.88212	NM_009448	ENSMUSG00000043091	Tuba1c	M[a]6|Tuba6	tubulin, alpha 1C	protein-coding	0.050000	0.557214	-99(GGGTATATAAGC,-,0.00)
mm_145584.1	chr18	60984344	60984544	+	1	NA	NA	NA	20890	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.070000	0.631841	
mm_154094.1	chr19	56951912	56952112	-	1	NA	NA	NA	56563	NM_146102	226250	Mm.226284	NM_146102	ENSMUSG00000025083	Afap1l2	AU041783|C86904|mKIAA1914	actin filament associated protein 1-like 2	protein-coding	0.000000	0.353234	
mm_23408.1	chr3	58415220	58415420	+	1	NA	NA	NA	600	NM_001081229	72033	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.165000	0.805970	
mm_116289.1	chr13	35167705	35167905	-	1	NA	NA	NA	-13818	NR_045616	100503727	Mm.32214	NR_045616	ENSMUSG00000102099	1700011B04Rik	-	RIKEN cDNA 1700011B04 gene	ncRNA	0.005000	0.422886	
mm_41505.1	chr5	92346909	92347109	+	1	NA	NA	NA	1880	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.020000	0.497512	
mm_34597.1	chr4	150236675	150236875	+	1	NA	NA	NA	-422	NM_023119	13806	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	0.095000	0.706468	
mm_492.1	chr1	36779849	36780049	+	1	NA	NA	NA	965	NM_001289612	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.020000	0.606965	
mm_53384.1	chr6	129533068	129533268	+	1	NA	NA	NA	-24	NM_020590	57436	Mm.14638	NM_020590	ENSMUSG00000030161	Gabarapl1	3110025G09Rik|9130422N19Rik|AI196471|Apg8l|Atg8l|GECI|MNCb-0091	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 1	protein-coding	0.050000	0.542289	
mm_70821.1	chr8	23138911	23139111	+	1	NA	NA	NA	-19	NM_001310436	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.040000	0.517413	-33(AATTATAAAAGG,-,0.00)
mm_99747.1	chr11	106580607	106580807	+	1	NA	NA	NA	32223	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.025000	0.477612	
mm_1958.1	chr1	86424057	86424257	+	1	NA	NA	NA	-2172	NM_027966	71863	Mm.179627	NM_027966	ENSMUSG00000036574	1700019O17Rik	-	RIKEN cDNA 1700019O17 gene	protein-coding	0.010000	0.532338	
mm_87876.1	chr10	61648469	61648669	+	1	NA	NA	NA	-52	NM_026438	67895	Mm.28897	NM_026438	ENSMUSG00000020089	Ppa1	2010317E03Rik|Pyp	pyrophosphatase (inorganic) 1	protein-coding	0.155000	0.766169	16(ACGCATTAAAGG,-,0.00)
mm_170845.1	chr2	177498127	177498327	+	1	NA	NA	NA	1	NR_036450	433520	Mm.425117	NM_001024825		Gm14403	OTTMUSG00000016571	predicted gene 14403	ncRNA	0.010000	0.497512	
mm_33323.1	chr4	129105416	129105616	+	1	NA	NA	NA	-14	NM_025452	66260	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.120000	0.741294	
mm_98275.1	chr11	89016785	89016985	+	1	NA	NA	NA	17482	NM_009546	217069	Mm.248445	NM_009546	ENSMUSG00000000275	Trim25	AA960166|AL022677|EFP|Zfp147	tripartite motif-containing 25	protein-coding	0.005000	0.542289	
mm_5252.1	chr1	16619209	16619409	-	1	NA	NA	NA	29	NM_025773	66799	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0.125000	0.736318	
mm_15925.1	chr2	165066893	165067093	+	1	NA	NA	NA	11357	NM_011611	21939	Mm.271833	NM_011611	ENSMUSG00000017652	Cd40	AI326936|Bp50|GP39|HIGM1|IGM|IMD3|T-BAM|TRAP|Tnfrsf5|p50	CD40 antigen	protein-coding	0.010000	0.462687	
mm_1566.1	chr1	74232949	74233149	+	1	NA	NA	NA	-3501	NM_029711	76709	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.010000	0.402985	
mm_11126.1	chr2	28229656	28229856	+	1	NA	NA	NA	24067	NM_019498	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.035000	0.487562	
mm_81553.1	chr9	110333319	110333519	+	1	NA	NA	NA	63	NM_001001144	235623	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0.135000	0.766169	
mm_130102.1	chr15	89429242	89429442	-	1	NA	NA	NA	585	NR_037154	12651	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	0.080000	0.741294	
mm_169093.1	chr1	34074714	34074914	+	1	NA	NA	NA	-42545	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.020000	0.502488	
mm_85113.1	chr9	95407133	95407333	-	1	NA	NA	NA	37	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.120000	0.741294	
mm_63051.1	chr7	121864982	121865182	+	1	NA	NA	NA	44	NR_073548	20277	Mm.7709	NM_011325	ENSMUSG00000030873	Scnn1b	-	sodium channel, nonvoltage-gated 1 beta	protein-coding	0.085000	0.676617	
mm_125457.1	chr15	52044790	52044990	+	1	NA	NA	NA	4783	NM_175503	239435	Mm.24204	NM_175503	ENSMUSG00000068522	Aard	A5D3|AV328152	alanine and arginine rich domain containing protein	protein-coding	0.030000	0.522388	
mm_26242.1	chr3	141465469	141465669	+	1	NA	NA	NA	5	NM_001293561	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.050000	0.631841	
mm_904.1	chr1	53823636	53823836	+	1	NA	NA	NA	-25688	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.015000	0.482587	
mm_167891.1	chrX	61183914	61184114	+	1	NA	NA	NA	1544	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.020000	0.402985	
mm_109678.1	chr12	113132741	113132941	+	1	NA	NA	NA	-7395	NM_024223	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.010000	0.592040	
mm_29681.1	chr3	122984358	122984558	-	1	NA	NA	NA	-11	NM_133857	99526	Mm.491248	NM_133857	ENSMUSG00000039701	Usp53	AA939927|Phxr3|Sp6|mKIAA1350|mbo	ubiquitin specific peptidase 53	protein-coding	0.115000	0.716418	
mm_135075.1	chr16	34262859	34263059	-	1	NA	NA	NA	251068	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.035000	0.616915	
mm_119849.1	chr14	54440712	54440912	+	1	NA	NA	NA	9214	NM_008608	17387	Mm.280175	NM_008608	ENSMUSG00000000957	Mmp14	AI325305|MMP-X1|MT-MMP-1|MT1-MMP|sabe	matrix metallopeptidase 14 (membrane-inserted)	protein-coding	0.010000	0.611940	
mm_27795.1	chr3	75647839	75648039	-	1	NA	NA	NA	7792	NR_040539	69193	Mm.374088	NR_040539	ENSMUSG00000099370	Platr10	2410007B07Rik	pluripotency associated transcript 10	ncRNA	0.000000	0.338308	
mm_15823.1	chr2	164564063	164564263	+	1	NA	NA	NA	1447	NM_026323	67701	Mm.27289	NM_026323	ENSMUSG00000017723	Wfdc2	1600023A02Rik|HE4|WAP5	WAP four-disulfide core domain 2	protein-coding	0.025000	0.527363	
mm_148580.1	chr19	5023999	5024199	+	1	NA	NA	NA	93	NM_007854	13340	Mm.4930	NM_007854	ENSMUSG00000024891	Slc29a2	Der12|Ent2|Hnp36	solute carrier family 29 (nucleoside transporters), member 2	protein-coding	0.105000	0.686567	
mm_153486.1	chr19	41305894	41306094	-	1	NA	NA	NA	-41990	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.005000	0.437811	
mm_59345.1	chr7	25627061	25627261	+	1	NA	NA	NA	-463	NM_001036740	232984	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	0.045000	0.582090	
mm_113926.1	chr13	49607947	49608147	+	1	NA	NA	NA	-24	NM_008760	18295	Mm.4258	NM_008760	ENSMUSG00000021390	Ogn	3110079A16Rik|OG|OIF|SLRR3A|mimecan|mimican	osteoglycin	protein-coding	0.000000	0.417910	
mm_146380.1	chr18	82585077	82585277	+	1	NA	NA	NA	30669	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.030000	0.507463	
mm_113615.1	chr13	41487056	41487256	+	1	NA	NA	NA	204	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.020000	0.577114	
mm_11143.1	chr2	28506861	28507061	+	1	NA	NA	NA	-6206	NM_009058	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.005000	0.477612	
mm_111263.1	chr12	85151170	85151370	-	1	NA	NA	NA	-6	NM_146244	238323	Mm.44829	NM_146244	ENSMUSG00000019235	Rps6kl1	A830084F09Rik|AW046440	ribosomal protein S6 kinase-like 1	protein-coding	0.060000	0.626866	
mm_91397.1	chr10	30793211	30793411	-	1	NA	NA	NA	9796	NM_172495	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.000000	0.393035	
mm_139824.1	chr17	68187814	68188014	+	1	NA	NA	NA	-85883	NM_177278	320858	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	l(3)mbt-like 4 (Drosophila)	protein-coding	0.000000	0.477612	
mm_93683.1	chr10	117814970	117815170	-	1	NA	NA	NA	-22365	NM_134010	103468	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.000000	0.323383	
mm_6360.1	chr1	72146823	72147023	-	1	NA	NA	NA	65384	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.005000	0.427861	
mm_29912.1	chr3	131474681	131474881	-	1	NA	NA	NA	-89987	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.050000	0.582090	
mm_141840.1	chr17	34729292	34729492	-	1	NA	NA	NA	14505	NM_009780	12268	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	0.035000	0.606965	
mm_116056.1	chr13	27438548	27438748	-	1	NA	NA	NA	40	NM_001271379	19112	Mm.142728	NM_011167	ENSMUSG00000021345	Prl8a6	Ghd13|PLP-C1|PLP-Ca|PLP-calpha|Prlpc|Prlpc1	prolactin family 8, subfamily a, member 6	protein-coding	0.010000	0.407960	
mm_106801.1	chr12	4944823	4945023	+	1	NA	NA	NA	27570	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.010000	0.378109	-36(TTCTATATATGG,-,0.00)
mm_26588.1	chr3	151294136	151294336	+	1	NA	NA	NA	-143646	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.040000	0.522388	
mm_65405.1	chr7	25230853	25231053	-	1	NA	NA	NA	2230	NR_046001	77124	Mm.294664	NM_178400	ENSMUSG00000090330	9130221H12Rik	AU016887	RIKEN cDNA 9130221H12 gene	ncRNA	0.025000	0.562189	
mm_101372.1	chr11	23770704	23770904	-	1	NA	NA	NA	166	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.065000	0.676617	
mm_56104.1	chr6	87483287	87483487	-	1	NA	NA	NA	12940	NR_104483	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.015000	0.601990	
mm_24169.1	chr3	88564353	88564553	+	1	NA	NA	NA	10737	NM_033526	94232	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	0.015000	0.527363	
mm_19520.1	chr2	94066651	94066851	-	1	NA	NA	NA	-56021	NM_026944	69113	Mm.272498	NM_026944	ENSMUSG00000040174	Alkbh3	1700108H04Rik|1810020C19Rik|Abh3|mABH3	alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase	protein-coding	0.015000	0.457711	
mm_166863.1	chr7	24457816	24458016	+	1	NA	NA	NA	-4567	NM_011113	18793	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.015000	0.512438	
mm_106044.1	chr11	116079478	116079678	-	1	NA	NA	NA	-1617	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.020000	0.577114	
mm_102099.1	chr11	52360847	52361047	-	1	NA	NA	NA	85	NM_011694	22333	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.130000	0.721393	
mm_155830.1	chrX	100730062	100730262	+	1	NA	NA	NA	-24	NM_001305941	71584	Mm.283495	NM_023608	ENSMUSG00000019359	Gdpd2	9130017L10Rik|Gde3|Obdpf	glycerophosphodiester phosphodiesterase domain containing 2	protein-coding	0.035000	0.621891	
mm_84827.1	chr9	78108534	78108734	-	1	NA	NA	NA	22	NM_023605	71538	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	0.150000	0.726368	
mm_149309.1	chr19	10741794	10741994	+	1	NA	NA	NA	947	NR_027805	403202	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0.005000	0.402985	
mm_106152.1	chr11	116610379	116610579	-	1	NA	NA	NA	13773	NM_001167680	217344	Mm.89695	NM_172572	ENSMUSG00000020806	Rhbdf2	4732465I17Rik|Rhbdl6|cub	rhomboid 5 homolog 2	protein-coding	0.030000	0.582090	
mm_85464.1	chr9	105495071	105495271	-	1	NA	NA	NA	-38	NM_001253836	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.130000	0.751244	
mm_172254.1	chr6	70240904	70241104	-	1	NA	NA	NA	551171	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.442786	
mm_44127.1	chr5	149641496	149641696	+	1	NA	NA	NA	-5260	NM_001347534	15505	Mm.270681	NM_013559	ENSMUSG00000029657	Hsph1	105kDa|AI790491|Hsp105|Hsp110|hsp-E7I|hsp110/105	heat shock 105kDa/110kDa protein 1	protein-coding	0.015000	0.532338	
mm_126302.1	chr15	79428884	79429084	+	1	NA	NA	NA	12834	NM_001289899	27373	Mm.30199	NM_013767	ENSMUSG00000022433	Csnk1e	AI426939|AI551861|AW457082|CK1epsilon|CKIe|KC1epsilon|tau	casein kinase 1, epsilon	protein-coding	0.020000	0.532338	
mm_113602.1	chr13	41236226	41236426	+	1	NA	NA	NA	-13518	NM_001135577	108934	Mm.38578	NM_001135577	ENSMUSG00000091264	Smim13	2900036K02Rik	small integral membrane protein 13	protein-coding	0.015000	0.547264	
mm_130954.1	chr15	103255339	103255539	-	1	NA	NA	NA	0	NM_008685	18022	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.065000	0.676617	
mm_170298.1	chr18	32559922	32560122	-	1	NA	NA	NA	12	NM_001347610	71683	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	0.045000	0.517413	-33(GTGTTTAAAAAA,-,0.00)
mm_167642.1	chr9	64796282	64796482	-	1	NA	NA	NA	-14629	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.000000	0.412935	
mm_55804.1	chr6	82857573	82857773	-	1	NA	NA	NA	24180	NR_040520	69652	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	0.005000	0.512438	
mm_162802.1	chr10	77515723	77515923	-	1	NA	NA	NA	-10	NM_133998	108707	Mm.259547	NM_133998	ENSMUSG00000032977	Fam207a	1810008A18Rik|AI303072	family with sequence similarity 207, member A	protein-coding	0.125000	0.661692	
mm_118251.1	chr13	112172084	112172284	-	1	NA	NA	NA	-116267	NM_001168403	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.015000	0.462687	
mm_134920.1	chr16	30388596	30388796	-	1	NA	NA	NA	-166	NM_001128096	224088	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0.175000	0.800995	
mm_18601.1	chr2	67516373	67516573	-	1	NA	NA	NA	70471	NM_001024618	241431	Mm.261043	NM_001024618	ENSMUSG00000027022	Xirp2	2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2	xin actin-binding repeat containing 2	protein-coding	0.035000	0.447761	
mm_149464.1	chr19	11531186	11531386	+	1	NA	NA	NA	-5563	NM_025658	66607	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	0.005000	0.313433	
mm_40018.1	chr5	33162049	33162249	+	1	NA	NA	NA	56089	NM_133903	100689	Mm.34694	NM_133903	ENSMUSG00000037379	Spon2	2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin	spondin 2, extracellular matrix protein	protein-coding	0.005000	0.412935	
mm_55644.1	chr6	72347724	72347924	-	1	NA	NA	NA	507	NM_026696	68364	Mm.52711	NM_026696	ENSMUSG00000058706	0610030E20Rik	1500031N04Rik|2810411C16Rik|AI461894	RIKEN cDNA 0610030E20 gene	protein-coding	0.055000	0.646766	-49(CCTTATATAACA,+,0.00)
mm_135408.1	chr16	44746253	44746453	-	1	NA	NA	NA	10	NM_001159329	66067	Mm.34520	NM_025332	ENSMUSG00000022668	Gtpbp8	0610037H22Rik	GTP-binding protein 8 (putative)	protein-coding	0.045000	0.552239	
mm_106604.1	chr11	120781734	120781934	-	1	NA	NA	NA	2370	NM_009053	19719	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.025000	0.577114	
mm_67519.1	chr7	80904971	80905171	-	1	NA	NA	NA	-9	NM_001291280	68039	Mm.22246	NM_026523	ENSMUSG00000025723	Nmb	3110023K12Rik	neuromedin B	protein-coding	0.060000	0.626866	17(TAGTTTAAAAGG,-,0.00)
mm_73901.1	chr8	119442395	119442595	+	1	NA	NA	NA	-4224	NM_054095	117148	Mm.356184	NM_054095	ENSMUSG00000031837	Necab2	Efcbp2	N-terminal EF-hand calcium binding protein 2	protein-coding	0.020000	0.636816	
mm_104557.1	chr11	96824045	96824245	-	1	NA	NA	NA	-18	NM_001130451	18023	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	0.040000	0.656716	
mm_41021.1	chr5	81512730	81512930	+	1	NA	NA	NA	491237	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.015000	0.288557	
mm_53903.1	chr6	3494493	3494693	-	1	NA	NA	NA	-95	NM_178899	101202	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0.005000	0.447761	
mm_39904.1	chr5	31251651	31251851	+	1	NA	NA	NA	45	NM_027221	69815	Mm.389609	NM_027221	ENSMUSG00000029149	Krtcap3	2010001C09Rik|AW321088|Kcp3	keratinocyte associated protein 3	protein-coding	0.110000	0.696517	
mm_130782.1	chr15	101550561	101550761	-	1	NA	NA	NA	-2	NM_053249	114566	Mm.458432	NM_053249	ENSMUSG00000049548	Krt82	Krt2-20	keratin 82	protein-coding	0.030000	0.542289	
mm_24270.1	chr3	89202839	89203039	+	1	NA	NA	NA	14	NR_122037	14466	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	0.030000	0.472637	-19(GCCCCTTTAAGC,-,0.00),-17(CCCTTTAAGCCG,+,0.00)
mm_36858.1	chr4	106859492	106859692	-	1	NA	NA	NA	-51878	NM_198438	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.000000	0.537313	39(GGGCTTTAAGGG,-,0.00),41(GCTTTAAGGGTC,+,0.00)
mm_154827.1	chrX	17725353	17725553	+	1	NA	NA	NA	-153128	NM_028058	72018	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	0.010000	0.527363	-39(CACTATAAAAGG,-,0.00)
mm_162095.1	chrX	37571313	37571513	+	1	NA	NA	NA	-8	NM_001085356	434764	Mm.379498	NM_001085356	ENSMUSG00000095741	Rhox2f	EG434764|Rhox2.6|Rhox2e	reproductive homeobox 2F	protein-coding	0.030000	0.477612	
mm_154451.1	chrM	1988	2188	-	1	NA	NA	NA	NA	NA									0.035000	0.398010	
mm_144571.1	chr18	31804002	31804202	+	1	NA	NA	NA	45	NM_001170966	74320	Mm.277705	NM_028866	ENSMUSG00000024400	Wdr33	1110001N06Rik|2310011G05Rik|2810021O11Rik|8430413N20Rik|WDC146	WD repeat domain 33	protein-coding	0.095000	0.626866	
mm_99544.1	chr11	103344645	103344845	+	1	NA	NA	NA	-8	NR_045346	653030	Mm.440684	NR_045346	ENSMUSG00000085887	Arhgap27os3	F830206d12rik|Gm11648|OTTMUSG00000003073	Rho GTPase activating protein 27, opposite strand 3	ncRNA	0.025000	0.616915	
mm_551.1	chr1	38019080	38019280	+	1	NA	NA	NA	21170	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.045000	0.442786	26(GTCCAGAAAAGG,-,0.00)
mm_120937.1	chr14	76515848	76516048	+	1	NA	NA	NA	4907	NR_045660	75789	Mm.159571	NR_045660	ENSMUSG00000097172	4930444M15Rik	-	RIKEN cDNA 4930444M15 gene	ncRNA	0.020000	0.517413	
mm_10139.1	chr2	4152499	4152699	+	1	NA	NA	NA	-264	NM_172475	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.020000	0.502488	
mm_154459.1	chrM	2935	3135	-	1	NA	NA	NA	NA	NA									0.000000	0.363184	
mm_100057.1	chr11	115245171	115245371	+	1	NA	NA	NA	21972	NM_010350	14813	Mm.39090	NM_010350	ENSMUSG00000020734	Grin2c	GluN2C|NMDAR2C|NR2C	glutamate receptor, ionotropic, NMDA2C (epsilon 3)	protein-coding	0.020000	0.621891	
mm_61145.1	chr7	57590469	57590669	+	1	NA	NA	NA	51	NM_001038701	14402	Mm.8004	NM_008071	ENSMUSG00000033676	Gabrb3	A230092K12Rik|AW049585|Cp1|Gabrb-3|beta3	gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	protein-coding	0.045000	0.641791	
mm_134322.1	chr16	16146704	16146904	-	1	NA	NA	NA	47	NM_146068	224008	Mm.244703	NM_146068	ENSMUSG00000041974	Spidr	2310008H04Rik|Kiaa0146	scaffolding protein involved in DNA repair	protein-coding	0.110000	0.706468	
mm_47180.1	chr5	120749758	120749958	-	1	NA	NA	NA	-10	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.020000	0.532338	
mm_154322.1	chrM	2228	2428	+	1	NA	NA	NA	NA	NA									0.035000	0.363184	60(TCCTATTTAAGA,-,0.00)
mm_139967.1	chr17	71673183	71673383	+	1	NA	NA	NA	22	NM_177087	320159	Mm.187372	NM_177087	ENSMUSG00000045761	Fam179a	4632412N22Rik	family with sequence similarity 179, member A	protein-coding	0.025000	0.601990	
mm_169163.1	chr13	65469771	65469971	+	1	NA	NA	NA	191017	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.015000	0.527363	-37(GTGCATATAAGC,-,0.00)
mm_89294.1	chr10	87913514	87913714	+	1	NA	NA	NA	52503	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.010000	0.482587	
mm_127910.1	chr15	9529655	9529855	-	1	NA	NA	NA	121	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.010000	0.462687	
mm_38020.1	chr4	133754303	133754503	-	1	NA	NA	NA	-792	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.120000	0.691542	
mm_106874.1	chr12	8010578	8010778	+	1	NA	NA	NA	33001	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.393035	
mm_106990.1	chr12	10390981	10391181	+	1	NA	NA	NA	301	NM_023697	105014	Mm.119343	NM_023697	ENSMUSG00000020621	Rdh14	3110030G19Rik|AW215439|PAN2	retinol dehydrogenase 14 (all-trans and 9-cis)	protein-coding	0.105000	0.716418	
mm_66049.1	chr7	30729344	30729544	-	1	NA	NA	NA	90	NM_027215	69804	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	0.115000	0.671642	
mm_58661.1	chr7	6730505	6730705	+	1	NA	NA	NA	22	NM_001290994	57775	Mm.40752	NM_021323	ENSMUSG00000051527	Usp29	Ocat	ubiquitin specific peptidase 29	protein-coding	0.035000	0.582090	
mm_58620.1	chr7	5068956	5069156	+	1	NA	NA	NA	6913	NM_001205231	22185	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.000000	0.422886	
mm_25426.1	chr3	107877140	107877340	+	1	NA	NA	NA	10	NM_133867	99662	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0.010000	0.587065	
mm_136696.1	chr17	7138399	7138599	+	1	NA	NA	NA	-31616	NM_011299	20112	Mm.268383	NM_011299	ENSMUSG00000023809	Rps6ka2	90kDa|D17Wsu134e|Rps6ka-rs1|Rsk3|p90rsk|pp90rsk	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.050000	0.532338	
mm_144170.1	chr18	6557055	6557255	+	1	NA	NA	NA	-41047	NM_007935	13831	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1 (Drosophila)	protein-coding	0.020000	0.487562	
mm_73711.1	chr8	111688561	111688761	+	1	NA	NA	NA	1013	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.025000	0.567164	
mm_2162.1	chr1	88226935	88227135	+	1	NA	NA	NA	15	NM_001281466	100040766	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	ENSMUSG00000044873|Heatr7b1|OTTMUSG00000020804	maestro heat-like repeat family member 2A	protein-coding	0.005000	0.507463	
mm_157099.1	chrX	9437439	9437639	-	1	NA	NA	NA	31785	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.338308	
mm_76653.1	chr8	93191808	93192008	-	1	NA	NA	NA	5896	NM_053200	104158	Mm.292803	NM_053200	ENSMUSG00000056973	Ces1d	Ces3|TGH	carboxylesterase 1D	protein-coding	0.010000	0.422886	
mm_100765.1	chr11	4594685	4594885	-	1	NA	NA	NA	30	NM_028860	74302	Mm.425669	NM_028860	ENSMUSG00000034354	Mtmr3	1700092A20Rik|AI255150|AW557713|FYVE-DSP1|ZFYVE10|mKIAA0371	myotubularin related protein 3	protein-coding	0.160000	0.776119	
mm_85440.1	chr9	104102459	104102659	-	1	NA	NA	NA	24084	NM_145700	252837	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	0.005000	0.582090	
mm_8736.1	chr1	160212603	160212803	-	1	NA	NA	NA	189	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0.155000	0.736318	
mm_24958.1	chr3	96676149	96676349	+	1	NA	NA	NA	6118	NM_001081139	213121	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	0.005000	0.492537	
mm_139568.1	chr17	57011488	57011688	+	1	NA	NA	NA	-300	NM_133801	98053	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0.060000	0.587065	
mm_132321.1	chr16	33793956	33794156	+	1	NA	NA	NA	19	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.010000	0.517413	
mm_83901.1	chr9	56160854	56161054	-	1	NA	NA	NA	116	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.130000	0.766169	
mm_114830.1	chr13	92355098	92355298	+	1	NA	NA	NA	-195	NM_010829	17686	Mm.343101	NM_010829	ENSMUSG00000014850	Msh3	D13Em1|Rep-3|Rep3	mutS homolog 3	protein-coding	0.080000	0.597015	
mm_75056.1	chr8	33641861	33642061	-	1	NA	NA	NA	15	NM_178648	108159	Mm.29301	NM_178648	ENSMUSG00000052906	Ubxn8	D0H8S2298E|Rep-8|Rep8h|Ubxd6	UBX domain protein 8	protein-coding	0.100000	0.711443	
mm_74956.1	chr8	26026603	26026803	-	1	NA	NA	NA	-11102	NM_008033	14272	Mm.3496	NM_008033	ENSMUSG00000015994	Fnta	FTA	farnesyltransferase, CAAX box, alpha	protein-coding	0.000000	0.293532	
mm_56467.1	chr6	98945484	98945684	-	1	NA	NA	NA	82714	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.035000	0.587065	
mm_50254.1	chr6	42585866	42586066	+	1	NA	NA	NA	11406	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.000000	0.298507	
mm_96079.1	chr11	60104842	60105042	+	1	NA	NA	NA	-71	NM_009021	19377	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.125000	0.756219	
mm_170014.1	chr17	17325969	17326169	-	1	NA	NA	NA	31626	NM_001324550	100862203	Mm.484235	NM_001324550		Gm6712	EG626854	predicted gene 6712	protein-coding	0.000000	0.497512	32(CCTTTTATAAGT,+,0.00)
mm_101153.1	chr11	16912629	16912829	-	1	NA	NA	NA	38553	NR_110421	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.010000	0.358209	
mm_63948.1	chr7	139834335	139834535	+	1	NA	NA	NA	261	NM_177469	52389	Mm.39863	NM_177469	ENSMUSG00000025475	Adgra1	2900059M17Rik|D7Ertd680e|Gpr123	adhesion G protein-coupled receptor A1	protein-coding	0.035000	0.547264	
mm_90341.1	chr10	127092939	127093139	+	1	NA	NA	NA	14132	NM_001033263	216439	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.010000	0.477612	
mm_88607.1	chr10	79814575	79814775	+	1	NA	NA	NA	-6346	NM_030218	78906	Mm.33087	NM_030218	ENSMUSG00000035852	Misp	9130017N09Rik	mitotic spindle positioning	protein-coding	0.010000	0.572139	
mm_159899.1	chr6	38570057	38570257	+	1	NA	NA	NA	14434	NM_001331223	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.005000	0.368159	
mm_94608.1	chr11	16257566	16257766	+	1	NA	NA	NA	-58	NM_001290539	211739	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding	0.135000	0.711443	
mm_138261.1	chr17	34592444	34592644	+	1	NA	NA	NA	73	NM_017463	18515	Mm.390957	NM_017463	ENSMUSG00000034673	Pbx2	AU043397|G17	pre B cell leukemia homeobox 2	protein-coding	0.085000	0.800995	
mm_15990.1	chr2	167056757	167056957	+	1	NA	NA	NA	-6077	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.005000	0.527363	
mm_70574.1	chr8	13165766	13165966	+	1	NA	NA	NA	6705	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.020000	0.477612	
mm_92088.1	chr10	62834871	62835071	-	1	NA	NA	NA	-42603	NM_026201	67500	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	0.010000	0.442786	
mm_56770.1	chr6	116423887	116424087	-	1	NA	NA	NA	37191	NM_009662	11689	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0.010000	0.472637	
mm_156317.1	chrX	136993227	136993427	+	1	NA	NA	NA	172	NM_001035509	66995	Mm.440155	NM_025893	ENSMUSG00000031428	Zcchc18	1500031H04Rik|Sizn2	zinc finger, CCHC domain containing 18	protein-coding	0.040000	0.592040	
mm_147657.1	chr18	60591671	60591871	-	1	NA	NA	NA	-55	NM_133363	170947	Mm.159257	NM_133363	ENSMUSG00000049173	Myoz3	4833419K08Rik|Fatz-3	myozenin 3	protein-coding	0.015000	0.532338	
mm_21079.1	chr2	152831600	152831800	-	1	NA	NA	NA	28	NM_009743	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.100000	0.646766	
mm_123335.1	chr14	63104104	63104304	-	1	NA	NA	NA	-18258	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.015000	0.467662	21(GCTCTTATAGAA,+,0.00)
mm_97267.1	chr11	75765096	75765296	+	1	NA	NA	NA	-30613	NR_136933	102641247	Mm.411386	NR_136932		Gm12339	OTTMUSG00000006218	predicted gene 12339	ncRNA	0.010000	0.378109	
mm_4422.1	chr1	172501149	172501349	+	1	NA	NA	NA	1003	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.045000	0.621891	
mm_170226.1	chr17	80938673	80938873	-	1	NA	NA	NA	-5859	NM_026516	68027	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0.040000	0.572139	
mm_137275.1	chr17	24719975	24720175	+	1	NA	NA	NA	12	NM_008503	16898	Mm.157452	NM_008503	ENSMUSG00000044533	Rps2	Llrep3|S4	ribosomal protein S2	protein-coding	0.090000	0.621891	
mm_153381.1	chr19	40376676	40376876	-	1	NA	NA	NA	25534	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.045000	0.671642	
mm_143315.1	chr17	66111420	66111620	-	1	NA	NA	NA	-26	NM_026833	68767	Mm.296545	NM_026833	ENSMUSG00000024101	Washc1	1110049F14Rik|ORF19|Wash|Wash1	WASH complex subunit 1	protein-coding	0.055000	0.626866	
mm_167712.1	chr9	96911053	96911253	+	1	NA	NA	NA	-21679	NM_001289645	235534	Mm.233031	NM_153420	ENSMUSG00000043587	Pxylp1	9430094M07Rik|Acpl2|BB177120|C130099A20Rik	2-phosphoxylose phosphatase 1	protein-coding	0.015000	0.532338	
mm_143977.1	chr17	87438582	87438782	-	1	NA	NA	NA	8253	NM_007589	12314	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017	calmodulin 2	protein-coding	0.030000	0.452736	
mm_72408.1	chr8	81775651	81775851	+	1	NA	NA	NA	433189	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.005000	0.348259	
mm_79798.1	chr9	64117134	64117334	+	1	NA	NA	NA	87	NM_145835	235435	Mm.436581	NM_145835	ENSMUSG00000032401	Lctl	E130104I05Rik|KLPH	lactase-like	protein-coding	0.005000	0.552239	
mm_160939.1	chr11	94653667	94653867	+	1	NA	NA	NA	-13	NM_177752	268465	Mm.358937	NM_177752	ENSMUSG00000039055	Eme1	6820428D13	essential meiotic structure-specific endonuclease 1	protein-coding	0.070000	0.582090	
mm_92286.1	chr10	71344688	71344888	-	1	NA	NA	NA	61	NM_134007	52637	Mm.254114	NM_134007	ENSMUSG00000037710	Cisd1	AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding	0.130000	0.741294	
mm_147510.1	chr18	50568645	50568845	-	1	NA	NA	NA	-46	NM_026108	67365	Mm.158150	NM_026108	ENSMUSG00000048875	Hdhd1a	1700121L12Rik|GS1|Hdhd1|Pudp	haloacid dehalogenase-like hydrolase domain containing 1A	protein-coding	0.035000	0.477612	
mm_86100.1	chr9	115309983	115310183	-	1	NA	NA	NA	338	NM_024222	68292	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0.120000	0.731343	
mm_162468.1	chr1	132007372	132007572	-	1	NA	NA	NA	-133	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.080000	0.656716	
mm_16029.1	chr2	167589504	167589704	+	1	NA	NA	NA	42401	NM_001311146	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.025000	0.597015	
mm_58450.1	chr7	3308855	3309055	+	1	NA	NA	NA	5423	NM_011102	18752	Mm.7980	NM_011102	ENSMUSG00000078816	Prkcg	PKCgamma|Pkcc|Prkcc	protein kinase C, gamma	protein-coding	0.000000	0.547264	
mm_120649.1	chr14	70530733	70530933	+	1	NA	NA	NA	12	NM_145219	213469	Mm.41708	NM_145219	ENSMUSG00000033595	Lgi3	AI841179|AW049851	leucine-rich repeat LGI family, member 3	protein-coding	0.115000	0.731343	
mm_4059.1	chr1	165851490	165851690	+	1	NA	NA	NA	62909	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.010000	0.532338	
mm_90568.1	chr10	128231536	128231736	+	1	NA	NA	NA	-427	NM_001164080	21853	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0.025000	0.373134	
mm_173028.1	chrX	105279278	105279478	+	1	NA	NA	NA	64991	NR_029910	723861		NR_029910	ENSMUSG00000065499	Mir384	Mirn384|mir-384|mmu-mir-384	microRNA 384	ncRNA	0.005000	0.447761	
mm_39892.1	chr5	31193129	31193329	+	1	NA	NA	NA	-75	NM_153680	266781	Mm.6118	NM_153680	ENSMUSG00000029146	Snx17	5830447M19Rik|AI790646|D5Ertd260e|b2b1625.1Clo|mKIAA0064	sorting nexin 17	protein-coding	0.080000	0.636816	
mm_78425.1	chr9	31252513	31252713	+	1	NA	NA	NA	-18788	NM_001101597	638580	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.020000	0.492537	
mm_139879.1	chr17	70751250	70751450	+	1	NA	NA	NA	95427	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.040000	0.587065	
mm_41091.1	chr5	87694445	87694645	+	1	NA	NA	NA	4880	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.010000	0.462687	
mm_114142.1	chr13	55315435	55315635	+	1	NA	NA	NA	6445	NM_009000	19336	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	0.005000	0.527363	
mm_166603.1	chr6	67533710	67533910	+	1	NA	NA	NA	2012	NM_020047	56753	Mm.439913	NM_020047	ENSMUSG00000051397	Tacstd2	C80403|EGP-1|GA733-1|Ly97|TROP2	tumor-associated calcium signal transducer 2	protein-coding	0.020000	0.507463	
mm_134660.1	chr16	22121217	22121417	-	1	NA	NA	NA	41982	NM_183029	319765	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.030000	0.522388	
mm_160759.1	chr10	86763816	86764016	+	1	NA	NA	NA	-15089	NM_175331	103466	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.015000	0.432836	
mm_31383.1	chr4	47996355	47996555	+	1	NA	NA	NA	-48850	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.000000	0.422886	
mm_138875.1	chr17	43138499	43138699	+	1	NA	NA	NA	19692	NR_045155	545207	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0.015000	0.507463	
mm_38585.1	chr4	141821257	141821457	-	1	NA	NA	NA	4648	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.010000	0.572139	
mm_149163.1	chr19	9018424	9018624	+	1	NA	NA	NA	620	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.010000	0.402985	
mm_130317.1	chr15	97338389	97338589	-	1	NA	NA	NA	-91202	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.055000	0.532338	
mm_104861.1	chr11	99385964	99386164	-	1	NA	NA	NA	3300	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.140000	0.716418	
mm_139025.1	chr17	46159173	46159373	+	1	NA	NA	NA	-1759	NM_019581	56055	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.005000	0.517413	-87(GTGTATATAAGC,-,0.00)
mm_153931.1	chr19	47416095	47416295	-	1	NA	NA	NA	48216	NM_001164717	14218	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.030000	0.557214	
mm_11110.1	chr2	28193011	28193211	+	1	NA	NA	NA	18	NM_001038614	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.135000	0.746269	
mm_124100.1	chr14	79300895	79301095	-	1	NA	NA	NA	640	NM_025427	66214	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	0.040000	0.611940	
mm_132102.1	chr16	31428650	31428850	+	1	NA	NA	NA	-3	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.085000	0.666667	
mm_108262.1	chr12	78691404	78691604	+	1	NA	NA	NA	-31	NM_027597	70897	Mm.56514	NM_027597	ENSMUSG00000056987	Fam71d	4921509E07Rik|4930516C23Rik|GARI-L2	family with sequence similarity 71, member D	protein-coding	0.000000	0.417910	-79(CACTTTAAAAAA,-,0.00)
mm_106483.1	chr11	120231371	120231571	-	1	NA	NA	NA	-1476	NM_001347621	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.095000	0.706468	
mm_112221.1	chr12	113429228	113429428	-	1	NA	NA	NA	-60237	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.502488	
mm_2228.1	chr1	90914989	90915189	+	1	NA	NA	NA	-11	NM_053015	171531	Mm.105208	NM_053015	ENSMUSG00000026303	Mlph	2210418F23Rik|5031433I09Rik|AW228792|D1Wsu84e|Slac-2a|l(1)-3Rk|l1Rk3|ln	melanophilin	protein-coding	0.055000	0.646766	
mm_53845.1	chr6	148992587	148992787	+	1	NA	NA	NA	-46255	NM_019643	56306	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Tera	family with sequence similarity 60, member A	protein-coding	0.005000	0.427861	
mm_8188.1	chr1	138099501	138099701	-	1	NA	NA	NA	75525	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.015000	0.368159	
mm_69350.1	chr7	130262722	130262922	-	1	NA	NA	NA	3986	NM_010207	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	0.025000	0.427861	
mm_13779.1	chr2	118772673	118772873	+	1	NA	NA	NA	4	NM_001145644	53906	Mm.36777	NM_025308	ENSMUSG00000046804	Phgr1	1810007E14Rik|AA238765	proline/histidine/glycine-rich 1	protein-coding	0.000000	0.562189	
mm_101096.1	chr11	11890301	11890501	-	1	NA	NA	NA	7	NM_016672	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.030000	0.502488	
mm_45136.1	chr5	48914407	48914607	-	1	NA	NA	NA	-24950	NM_030265	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.000000	0.323383	
mm_44066.1	chr5	148400048	148400248	+	1	NA	NA	NA	-244	NM_007513	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.030000	0.502488	-25(CATTTTAAAGAC,+,0.00)
mm_108338.1	chr12	80168858	80169058	+	1	NA	NA	NA	-36114	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.035000	0.542289	
mm_141248.1	chr17	27547234	27547434	-	1	NA	NA	NA	-9240	NM_001166536	15361	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0.030000	0.641791	
mm_29985.1	chr3	135423966	135424166	-	1	NA	NA	NA	-633	NM_025902	67006	Mm.269993	NM_025902	ENSMUSG00000028165	Cisd2	1500009M05Rik|1500026J14Rik|1500031D15Rik|AI848398|B630006A20Rik|Miner1|Naf-1|Noxp70|Zcd2	CDGSH iron sulfur domain 2	protein-coding	0.010000	0.437811	
mm_131678.1	chr16	20673776	20673976	+	1	NA	NA	NA	1149	NM_001304432	208643	Mm.260256	NM_145941	ENSMUSG00000045983	Eif4g1	E030015G23Rik|eIF-4-gamma 1|eIF-4G 1|eIF-4G1|eIF4GI	eukaryotic translation initiation factor 4, gamma 1	protein-coding	0.020000	0.572139	
mm_2672.1	chr1	127213247	127213447	+	1	NA	NA	NA	8361	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.000000	0.447761	
mm_35106.1	chr4	9613807	9614007	-	1	NA	NA	NA	29810	NM_001177853	65973	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.005000	0.527363	
mm_39049.1	chr4	153241387	153241587	-	1	NA	NA	NA	241343	NM_001099299	230959	Mm.318874	NM_001099299	ENSMUSG00000039546	Ajap1	Gm573	adherens junction associated protein 1	protein-coding	0.010000	0.457711	
mm_75726.1	chr8	69121316	69121516	-	1	NA	NA	NA	19537	NM_199364	211134	Mm.409446	NM_199364	ENSMUSG00000036306	Lzts1	F37|FEZ1|PSD-Zip70	leucine zipper, putative tumor suppressor 1	protein-coding	0.030000	0.502488	
mm_8372.1	chr1	150971234	150971434	-	1	NA	NA	NA	22101	NM_001024720	545370	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.010000	0.422886	
mm_49879.1	chr6	38605018	38605218	+	1	NA	NA	NA	32121	NM_001033171	74253	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0.000000	0.427861	
mm_170508.1	chr19	27751274	27751474	+	1	NA	NA	NA	231574	NM_001166414	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.035000	0.467662	
mm_142351.1	chr17	43628509	43628709	-	1	NA	NA	NA	1690	NM_001161366	210510	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	0.030000	0.487562	
mm_62578.1	chr7	104465580	104465780	+	1	NA	NA	NA	-487	NM_009099	20128	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.005000	0.532338	
mm_97334.1	chr11	77293339	77293539	+	1	NA	NA	NA	-54841	NM_001291190	237860	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot homolog 2 (Drosophila)	protein-coding	0.030000	0.457711	
mm_37532.1	chr4	124862134	124862334	-	1	NA	NA	NA	-63	NM_001007573	215090	Mm.472762	NM_001007573	ENSMUSG00000042763	Maneal	Gm50	mannosidase, endo-alpha-like	protein-coding	0.175000	0.791045	
mm_118071.1	chr13	102958046	102958246	-	1	NA	NA	NA	197891	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.030000	0.532338	-38(TCCTTTAGAGAG,+,0.00)
mm_113341.1	chr13	31785128	31785328	+	1	NA	NA	NA	-21418	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.010000	0.557214	
mm_707.1	chr1	40720582	40720782	+	1	NA	NA	NA	38970	NM_001033289	226999	Mm.256414	NM_001033289	ENSMUSG00000026062	Slc9a2	2210416H12Rik|4932415O19Rik|AV333884|NHE2	solute carrier family 9 (sodium/hydrogen exchanger), member 2	protein-coding	0.015000	0.283582	
mm_61711.1	chr7	81243047	81243247	+	1	NA	NA	NA	29343	NM_008803	18584	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.005000	0.422886	
mm_10669.1	chr2	20968638	20968838	+	1	NA	NA	NA	-136	NR_033225	433408	Mm.386941	NR_033225		Gm13375	OTTMUSG00000011664	predicted gene 13375	ncRNA	0.150000	0.791045	
mm_77482.1	chr8	122475962	122476162	-	1	NA	NA	NA	2	NM_001033142	68718	Mm.34356	NM_001033142	ENSMUSG00000014470	Rnf166	1110031E24Rik|AW555115|Zfp313l	ring finger protein 166	protein-coding	0.155000	0.791045	
mm_102905.1	chr11	69555490	69555690	-	1	NA	NA	NA	4647	NM_007911	13643	Mm.249637	NM_007911	ENSMUSG00000003934	Efnb3	EFL-6|ELF-3|Elk-L3|Epl8|LERK-8|NLERK-2	ephrin B3	protein-coding	0.005000	0.567164	
mm_41413.1	chr5	90787656	90787856	+	1	NA	NA	NA	1655	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.005000	0.383085	
mm_121407.1	chr14	119321465	119321665	+	1	NA	NA	NA	183300	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.005000	0.383085	
mm_25870.1	chr3	129935013	129935213	+	1	NA	NA	NA	33698	NM_009811	12368	Mm.281379	NM_009811	ENSMUSG00000027997	Casp6	CASP-6|Mch2	caspase 6	protein-coding	0.010000	0.557214	-32(AGGTTTAAAAAG,-,0.00),-30(GTTTAAAAAGCC,+,0.00)
mm_158231.1	chrX	106312845	106313045	-	1	NA	NA	NA	3119	NR_105803	102465963		NR_105803	ENSMUSG00000099128	Mir6382	Gm27319|mmu-mir-6382	microRNA 6382	ncRNA	0.010000	0.452736	-90(GGCTATAAAACC,-,0.00)
mm_93509.1	chr10	114802210	114802410	-	1	NA	NA	NA	-940	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	0.085000	0.597015	
mm_15610.1	chr2	160747235	160747435	+	1	NA	NA	NA	16025	NM_021280	18803	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.035000	0.517413	
mm_163585.1	chr13	36885332	36885532	+	1	NA	NA	NA	-150955	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.005000	0.457711	
mm_101861.1	chr11	48871227	48871427	-	1	NA	NA	NA	19	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding	0.050000	0.562189	
mm_152346.1	chr19	9984723	9984923	-	1	NA	NA	NA	2177	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.020000	0.477612	
mm_135866.1	chr16	60605527	60605727	-	1	NA	NA	NA	-96	NM_007938	13840	Mm.455790	NM_007938	ENSMUSG00000055540	Epha6	Ehk2|Hek12|m-ehk2	Eph receptor A6	protein-coding	0.065000	0.626866	
mm_12665.1	chr2	75659160	75659360	+	1	NA	NA	NA	1	NM_053263	229279	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.115000	0.661692	
mm_54026.1	chr6	8778445	8778645	-	1	NA	NA	NA	-61	NM_010492	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.045000	0.537313	
mm_10045.1	chr1	193130165	193130365	-	1	NA	NA	NA	-14	NM_145415	215193	Mm.173758	NM_145415	ENSMUSG00000016181	Diexf	AA408296|AW045375|Def	digestive organ expansion factor homolog (zebrafish)	protein-coding	0.085000	0.587065	
mm_98241.1	chr11	88162283	88162483	+	1	NA	NA	NA	-7182	NM_001172099	103841	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	0.005000	0.552239	
mm_103029.1	chr11	69735232	69735432	-	1	NA	NA	NA	23301	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.015000	0.552239	
mm_110371.1	chr12	40199224	40199424	-	1	NA	NA	NA	-9	NM_001033437	380755	Mm.390463	NM_001033437	ENSMUSG00000071342	Lsmem1	Gm889	leucine-rich single-pass membrane protein 1	protein-coding	0.025000	0.462687	
mm_99150.1	chr11	100574874	100575074	+	1	NA	NA	NA	35	NM_009923	12799	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.120000	0.746269	
mm_126459.1	chr15	80948417	80948617	+	1	NA	NA	NA	27	NM_009634	11564	Mm.38151	NM_009634	ENSMUSG00000022407	Adsl	Adl|Asl	adenylosuccinate lyase	protein-coding	0.105000	0.676617	
mm_173036.1	chrX	107057462	107057662	-	1	NA	NA	NA	-31773	NM_172435	78826	Mm.74639	NM_172435	ENSMUSG00000050921	P2ry10	5830408N17Rik|Lypsr2|P2Y10	purinergic receptor P2Y, G-protein coupled 10	protein-coding	0.035000	0.492537	
mm_62677.1	chr7	109520989	109521189	+	1	NA	NA	NA	957	NR_028079	100302499	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	0.000000	0.412935	
mm_122507.1	chr14	46884908	46885108	-	1	NA	NA	NA	2043	NM_001037221	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.100000	0.741294	
mm_164249.1	chr15	97976792	97976992	-	1	NA	NA	NA	12663	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.025000	0.577114	
mm_170734.1	chr2	152343995	152344195	-	1	NA	NA	NA	-35	NM_175093	228775	Mm.276018	NM_144554	ENSMUSG00000032715	Trib3	Ifld2|Nipk|SINK|SKIP3|TRB-3|Trb3	tribbles pseudokinase 3	protein-coding	0.090000	0.681592	
mm_133502.1	chr16	90727411	90727611	+	1	NA	NA	NA	-140	NM_025642	66578	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0.100000	0.646766	
mm_38930.1	chr4	150192414	150192614	-	1	NA	NA	NA	8621	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.020000	0.532338	
mm_61733.1	chr7	81872947	81873147	+	1	NA	NA	NA	10360	NM_001291282	107769	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.015000	0.437811	
mm_69690.1	chr7	139992388	139992588	-	1	NA	NA	NA	74	NM_007403	11501	Mm.15969	NM_007403	ENSMUSG00000025473	Adam8	ADAM 8|CD156|CD156a|E430039A18Rik|MS2	a disintegrin and metallopeptidase domain 8	protein-coding	0.010000	0.507463	
mm_11634.1	chr2	34775829	34776029	+	1	NA	NA	NA	3839	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.005000	0.383085	
mm_53699.1	chr6	142756783	142756983	+	1	NA	NA	NA	197	NM_009908	12764	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.130000	0.761194	
mm_135041.1	chr16	32877633	32877833	-	1	NA	NA	NA	-51	NM_027226	69823	Mm.12831	NM_027226	ENSMUSG00000022800	Fyttd1	2010005M05Rik|3830411L18Rik|3830421F13Rik|4933423A17Rik|AI098218|AW539567|C85190	forty-two-three domain containing 1	protein-coding	0.140000	0.751244	
mm_161091.1	chr12	87954559	87954759	+	1	NA	NA	NA	179	NM_001270792	100039087	Mm.458830	NM_001270792	ENSMUSG00000096276	Gm2042	-	predicted gene 2042	protein-coding	0.000000	0.308458	-3(GTTTATATACTG,+,0.00)
mm_53211.1	chr6	126163182	126163382	+	1	NA	NA	NA	1678	NM_001164035	18205	Mm.267570	NM_008742	ENSMUSG00000049107	Ntf3	AI316846|AI835689|HDNF|NGF-2|Nt3|Ntf-3	neurotrophin 3	protein-coding	0.050000	0.651741	
mm_27353.1	chr3	50417151	50417351	-	1	NA	NA	NA	26362	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.363184	
mm_158603.1	chrX	152016248	152016448	-	1	NA	NA	NA	-53	NM_025660	66611	Mm.158120	NM_025660	ENSMUSG00000025257	Ribc1	2610028I09Rik|W08639	RIB43A domain with coiled-coils 1	protein-coding	0.070000	0.567164	
mm_88967.1	chr10	81395171	81395371	+	1	NA	NA	NA	2207	NM_001099917	72273	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.025000	0.577114	
mm_56243.1	chr6	90731313	90731513	-	1	NA	NA	NA	-14884	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.010000	0.611940	
mm_33750.1	chr4	134268240	134268440	+	1	NA	NA	NA	-14234	NM_001099296	72690	Mm.100168	NM_001099296	ENSMUSG00000050105	Grrp1	2810043G13Rik|Fam110d	glycine/arginine rich protein 1	protein-coding	0.040000	0.532338	
mm_131732.1	chr16	21867877	21868077	+	1	NA	NA	NA	-23992	NM_172821	71751	Mm.420837	NM_172821	ENSMUSG00000033618	Map3k13	C130026N12Rik|LZK	mitogen-activated protein kinase kinase kinase 13	protein-coding	0.005000	0.417910	
mm_168847.1	chr12	23800843	23801043	-	1	NA	NA	NA	296326	NM_001256489	66808	Mm.379124	NM_001256489	ENSMUSG00000073158	9030624G23Rik	-	RIKEN cDNA 9030624G23 gene	protein-coding	0.130000	0.756219	
mm_141808.1	chr17	34603305	34603505	-	1	NA	NA	NA	156	NM_019403	54197	Mm.274542	NM_019403	ENSMUSG00000015478	Rnf5	2410131O05Rik|AA407576|NG2	ring finger protein 5	protein-coding	0.085000	0.626866	
mm_42179.1	chr5	112261859	112262059	+	1	NA	NA	NA	6139	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.000000	0.402985	
mm_158232.1	chrX	106387325	106387525	-	1	NA	NA	NA	77599	NR_105803	102465963		NR_105803	ENSMUSG00000099128	Mir6382	Gm27319|mmu-mir-6382	microRNA 6382	ncRNA	0.000000	0.492537	
mm_34453.1	chr4	148041085	148041285	+	1	NA	NA	NA	-4	NR_027809	17769	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	5,10-methylenetetrahydrofolate reductase	protein-coding	0.025000	0.606965	
mm_165021.1	chr19	32172445	32172645	-	1	NA	NA	NA	38468	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.000000	0.487562	
mm_98984.1	chr11	98741783	98741983	+	1	NA	NA	NA	98	NM_001313983	21833	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.140000	0.825871	
mm_13798.1	chr2	118926425	118926625	+	1	NA	NA	NA	28	NM_028117	72136	Mm.486238	NM_028117	ENSMUSG00000074916	Chst14	2600016L03Rik|D4ST-1|D4st1	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	protein-coding	0.075000	0.741294	
mm_138591.1	chr17	35506335	35506535	+	1	NA	NA	NA	403	NM_013633	18999	Mm.17031	NM_013633	ENSMUSG00000024406	Pou5f1	NF-A3|Oct-3|Oct-3/4|Oct-4|Oct3|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4	POU domain, class 5, transcription factor 1	protein-coding	0.030000	0.601990	
mm_161483.1	chr15	83022956	83023156	-	1	NA	NA	NA	82	NM_028728	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.035000	0.567164	
mm_164434.1	chr16	48872996	48873196	+	1	NA	NA	NA	488	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.005000	0.398010	
mm_103999.1	chr11	84870660	84870860	-	1	NA	NA	NA	-22	NM_153144	217039	Mm.356653	NM_153144	ENSMUSG00000020530	Ggnbp2	AI451896|C75939|D330017P12Rik|DIF-3|Zfp403	gametogenetin binding protein 2	protein-coding	0.105000	0.761194	
mm_86563.1	chr10	11281502	11281702	+	1	NA	NA	NA	15	NM_001168297	71865	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0.165000	0.820896	
mm_33876.1	chr4	136172177	136172377	+	1	NA	NA	NA	3	NM_177733	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.055000	0.422886	
mm_98522.1	chr11	94967501	94967701	+	1	NA	NA	NA	8	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.010000	0.557214	
mm_121727.1	chr14	17172768	17172968	-	1	NA	NA	NA	67310	NR_144493	100417973		NR_144493		Pou5f1-rs6	Gm18927|Oct4P3|Otf3-rs6|Otf3f	POU domain, class 5, transcription factor 1, related sequence 6	pseudo	0.090000	0.761194	
mm_162585.1	chr1	180848583	180848783	-	1	NA	NA	NA	-2468	NM_145943	208768	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.025000	0.542289	
mm_116002.1	chr13	24603700	24603900	-	1	NA	NA	NA	967	NR_024599	76024	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347|OTTMUSG00000000601|OTTMUSG00000000602	X-linked lymphocyte-regulated 5 pseudogene	pseudo	0.020000	0.532338	
mm_151140.1	chr19	53051316	53051516	+	1	NA	NA	NA	-12762	NM_133216	170750	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	0.015000	0.557214	
mm_31934.1	chr4	86575579	86575779	+	1	NA	NA	NA	6	NM_178376	68441	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	0.105000	0.656716	
mm_4066.1	chr1	166130157	166130357	+	1	NA	NA	NA	-203	NM_021610	59290	Mm.46357	NM_021610	ENSMUSG00000000544	Gpa33	2010310L10Rik|2210401D16Rik|BB116197	glycoprotein A33 (transmembrane)	protein-coding	0.005000	0.497512	
mm_100969.1	chr11	6706816	6707016	-	1	NA	NA	NA	13121	NR_046025	626419	Mm.390334	NR_046025	ENSMUSG00000086808	Gm11981	OTTMUSG00000005129	predicted gene 11981	ncRNA	0.040000	0.582090	
mm_162472.1	chr1	133045992	133046192	+	1	NA	NA	NA	80	NM_001099276	240752	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphoinositide-3-kinase, class 2, beta polypeptide	protein-coding	0.145000	0.736318	
mm_106202.1	chr11	116843192	116843392	-	1	NA	NA	NA	157	NM_033398	107817	Mm.481684	NM_033398	ENSMUSG00000056962	Jmjd6	5730436I23Rik|D11Ertd195e|PSR|PtdSerR|Ptdsr|mKIAA0585	jumonji domain containing 6	protein-coding	0.135000	0.701493	-34(CGACTTTAAAGG,-,0.00),-33(GACTTTAAAGGC,-,0.00),-32(ACTTTAAAGGCG,+,0.00)
mm_54821.1	chr6	42351523	42351723	-	1	NA	NA	NA	1795	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.010000	0.626866	
mm_103716.1	chr11	79525750	79525950	-	1	NA	NA	NA	-2088	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.005000	0.393035	
mm_156395.1	chrX	139807663	139807863	+	1	NA	NA	NA	6955	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.000000	0.472637	
mm_47944.1	chr5	135394158	135394358	-	1	NA	NA	NA	288	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.145000	0.766169	
mm_35176.1	chr4	15148893	15149093	-	1	NA	NA	NA	138	NM_178617	69352	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	0.090000	0.686567	
mm_27938.1	chr3	79591210	79591410	-	1	NA	NA	NA	-79	NM_026352	67738	Mm.295252	NM_026352	ENSMUSG00000027804	Ppid	4930564J03Rik|CYP-40|Ppidl|Ppif	peptidylprolyl isomerase D (cyclophilin D)	protein-coding	0.080000	0.572139	
mm_154607.1	chrX	7644728	7644928	+	1	NA	NA	NA	6248	NM_009305	20977	Mm.223674	NM_009305	ENSMUSG00000031144	Syp	A230093K24Rik|AI848995|Syn|p38	synaptophysin	protein-coding	0.020000	0.487562	
mm_132173.1	chr16	32332152	32332352	+	1	NA	NA	NA	0	NM_177633	224111	Mm.31275	NM_177633	ENSMUSG00000053774	Ubxn7	A630090P18|AI196514|Ubxd7|mKIAA0794	UBX domain protein 7	protein-coding	0.125000	0.706468	
mm_60635.1	chr7	44816270	44816470	+	1	NA	NA	NA	0	NM_001171024	100328588	Mm.2565	NM_001171024	ENSMUSG00000074141	Gm21948	Nup62-il4i1	predicted gene, 21948	protein-coding	0.120000	0.686567	
mm_93523.1	chr10	115290203	115290403	-	1	NA	NA	NA	25288	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.005000	0.308458	
mm_122731.1	chr14	52328264	52328464	-	1	NA	NA	NA	306	NM_015772	50524	Mm.39487	NM_015772	ENSMUSG00000049532	Sall2	AI225809|AW559097|Msal-2|Sal-2|mKIAA0360|p150(Sal2)	sal-like 2 (Drosophila)	protein-coding	0.035000	0.527363	-35(CTCCTTTAAAGA,-,0.00),-34(TCCTTTAAAGAC,+,0.00)
mm_96201.1	chr11	62057136	62057336	+	1	NA	NA	NA	-19788	NM_001029936	432572	Mm.438022	NM_001029936	ENSMUSG00000042331	Specc1	2810012G08Rik|B230396K10Rik|Cytsb	sperm antigen with calponin homology and coiled-coil domains 1	protein-coding	0.000000	0.333333	
mm_162365.1	chr1	65080296	65080496	+	1	NA	NA	NA	1894	NM_144761	12965	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	0.025000	0.512438	
mm_118458.1	chr14	8666255	8666455	+	1	NA	NA	NA	-35	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	0.070000	0.646766	
mm_111545.1	chr12	100899463	100899663	-	1	NA	NA	NA	-39	NM_001177674	238377	Mm.32160	NM_175493	ENSMUSG00000047415	Gpr68	BB131428|Ogr1	G protein-coupled receptor 68	protein-coding	0.050000	0.646766	
mm_152130.1	chr19	7019278	7019478	-	1	NA	NA	NA	91	NM_153795	108101	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.020000	0.611940	
mm_8351.1	chr1	150265974	150266174	-	1	NA	NA	NA	-53343	NM_024458	20028	Mm.440883	NM_024458	ENSMUSG00000006007	Pdc	Rpr-1|Rpr1	phosducin	protein-coding	0.035000	0.487562	
mm_50199.1	chr6	42038362	42038562	+	1	NA	NA	NA	68	NM_009299	20939	Mm.4119	NM_009299	ENSMUSG00000023289	Sva	-	seminal vesicle antigen	protein-coding	0.000000	0.412935	
mm_163383.1	chr12	53283984	53284184	+	1	NA	NA	NA	35407	NM_013780	27386	Mm.247044	NM_013780	ENSMUSG00000021010	Npas3	4930423H22Rik|bHLHe12	neuronal PAS domain protein 3	protein-coding	0.000000	0.412935	
mm_89245.1	chr10	87858588	87858788	+	1	NA	NA	NA	-364	NM_001111275	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.005000	0.442786	
mm_22144.1	chr2	172225639	172225839	-	1	NA	NA	NA	-22753	NM_008561	17201	Mm.57183	NM_008561	ENSMUSG00000038537	Mc3r	MC3-R	melanocortin 3 receptor	protein-coding	0.015000	0.492537	-22(TGCTCTAAAGGG,-,0.00)
mm_110910.1	chr12	76177158	76177358	-	1	NA	NA	NA	1	NM_010157	13983	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0.040000	0.542289	-34(GTCTTTAAAAGA,-,0.00),-33(TCTTTAAAAGAA,+,0.00)
mm_16934.1	chr2	14055843	14056043	-	1	NA	NA	NA	92	NM_001012396	30963	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	0.155000	0.791045	
mm_25427.1	chr3	107884699	107884899	+	1	NA	NA	NA	7569	NM_133867	99662	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0.010000	0.537313	
mm_154645.1	chrX	7789921	7790121	+	1	NA	NA	NA	28	NM_207670	54645	Mm.194811	NM_207670	ENSMUSG00000031153	Gripap1	AI854681|DXImx47e|GRASP-1|Sfc10|mKIAA1167	GRIP1 associated protein 1	protein-coding	0.055000	0.601990	
mm_154411.1	chrM	15258	15458	+	1	NA	NA	NA	NA	NA									0.005000	0.338308	
mm_55582.1	chr6	71397288	71397488	-	1	NA	NA	NA	23961	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.020000	0.477612	-37(CCCTTTAAATGC,+,0.00),-37(CCCTTTAAATGC,-,0.00)
mm_147126.1	chr18	35910312	35910512	-	1	NA	NA	NA	-54418	NM_028707	74002	Mm.196944	NM_028707	ENSMUSG00000024347	Psd2	6330404E20Rik|AW125584|EFA6C	pleckstrin and Sec7 domain containing 2	protein-coding	0.010000	0.467662	-70(TTTTTTAAAAGG,-,0.00)
mm_93559.1	chr10	116473536	116473736	-	1	NA	NA	NA	-113	NM_021452	58802	Mm.440652	NM_021452	ENSMUSG00000054934	Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding	0.190000	0.845771	
mm_27853.1	chr3	79157067	79157267	-	1	NA	NA	NA	-11292	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.402985	
mm_99723.1	chr11	106300289	106300489	+	1	NA	NA	NA	1507	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.045000	0.592040	
mm_67266.1	chr7	75780325	75780525	-	1	NA	NA	NA	-67913	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.000000	0.427861	
mm_20626.1	chr2	131954901	131955101	-	1	NA	NA	NA	3964	NM_001278520	26434	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion protein dublet	protein-coding	0.030000	0.522388	
mm_2568.1	chr1	118391127	118391327	+	1	NA	NA	NA	2169	NM_001293301	76707	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	0.000000	0.393035	
mm_46199.1	chr5	98030881	98031081	-	1	NA	NA	NA	-19	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.110000	0.676617	
mm_169633.1	chr15	47180870	47181070	+	1	NA	NA	NA	557665	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0.045000	0.606965	
mm_135494.1	chr16	46120146	46120346	-	1	NA	NA	NA	2	NM_032465	84544	Mm.29204	NM_032465	ENSMUSG00000022657	Cd96	1700109I12Rik|Tactile	CD96 antigen	protein-coding	0.020000	0.482587	
mm_164836.1	chr18	39701428	39701628	+	1	NA	NA	NA	-71969	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.010000	0.442786	
mm_40038.1	chr5	33799482	33799682	+	1	NA	NA	NA	-16878	NM_019694	56384	Mm.260538	NM_019694	ENSMUSG00000005299	Letm1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding	0.010000	0.417910	
mm_138028.1	chr17	33918960	33919160	+	1	NA	NA	NA	-418	NM_001025313	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.010000	0.497512	
mm_67781.1	chr7	97332029	97332229	-	1	NA	NA	NA	-194	NM_001039039	622320	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	0.090000	0.731343	-15(TGGCCTTAAAGG,-,0.00),-14(GGCCTTAAAGGG,-,0.00),-13(GCCTTAAAGGGG,+,0.00),-12(CCTTAAAGGGGA,+,0.00)
mm_94730.1	chr11	20741671	20741871	+	1	NA	NA	NA	-215	NM_181411	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.070000	0.606965	
mm_141296.1	chr17	28080027	28080227	-	1	NA	NA	NA	457	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.135000	0.746269	
mm_115649.1	chr13	12309611	12309811	-	1	NA	NA	NA	31021	NM_033268	11472	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	0.015000	0.477612	
mm_24154.1	chr3	88424697	88424897	+	1	NA	NA	NA	337	NM_001281795	229517	Mm.301740	NM_178696	ENSMUSG00000050144	Slc25a44	6720482A19|B430110G05Rik	solute carrier family 25, member 44	protein-coding	0.055000	0.601990	
mm_151706.1	chr19	4498485	4498685	-	1	NA	NA	NA	-2	NM_027237	69861	Mm.282978	NM_027237	ENSMUSG00000042041	2010003K11Rik	-	RIKEN cDNA 2010003K11 gene	protein-coding	0.010000	0.517413	
mm_87379.1	chr10	44599792	44599992	+	1	NA	NA	NA	-141144	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.025000	0.467662	
mm_158617.1	chrX	152644416	152644616	-	1	NA	NA	NA	32	NM_001290686	110380	Mm.40796	NM_172441	ENSMUSG00000045180	Shroom2	4832440C16|Apxl|C630003H05Rik|Shrm2	shroom family member 2	protein-coding	0.015000	0.517413	
mm_29897.1	chr3	131344809	131345009	-	1	NA	NA	NA	14	NM_028943	74442	Mm.273360	NM_028943	ENSMUSG00000050931	Sgms2	4933405A16Rik|5133401H06Rik|AI854299	sphingomyelin synthase 2	protein-coding	0.025000	0.487562	
mm_149879.1	chr19	25237156	25237356	+	1	NA	NA	NA	54	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.085000	0.651741	
mm_132160.1	chr16	32179756	32179956	+	1	NA	NA	NA	56	NM_001033539	328660	Mm.441006	NM_001033539	ENSMUSG00000075269	Bex6	B020003O03Rik	brain expressed family member 6	protein-coding	0.010000	0.393035	
mm_165552.1	chr3	12155178	12155378	+	1	NA	NA	NA	-310919	NR_040751	100038545	Mm.388494	NR_040751	ENSMUSG00000104015	Gm10745	ENSMUSG00000074696	predicted gene 10745	ncRNA	0.010000	0.417910	
mm_65119.1	chr7	19403704	19403904	-	1	NA	NA	NA	300	NM_001286039	232943	Mm.213403	NM_146182	ENSMUSG00000040714	Klc3	BC017147|Klct	kinesin light chain 3	protein-coding	0.090000	0.701493	
mm_16531.1	chr2	181578268	181578468	+	1	NA	NA	NA	-112	NR_027289	100271841	Mm.438007	NR_027289	ENSMUSG00000010492	Uckl1os	Gm16119|OTTMUSG00000030649	uridine-cytidine kinase 1-like 1, opposite strand	ncRNA	0.015000	0.492537	-34(CAGTATTAAAGA,-,0.00)
mm_38508.1	chr4	141139660	141139860	-	1	NA	NA	NA	36	NR_102344	213491	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0.090000	0.696517	
mm_91035.1	chr10	18234802	18235002	-	1	NA	NA	NA	79	NM_001346751	215814	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	0.050000	0.562189	
mm_102089.1	chr11	52282665	52282865	-	1	NA	NA	NA	-170	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.070000	0.651741	
mm_115568.1	chr13	9765266	9765466	-	1	NA	NA	NA	-45	NM_144516	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.045000	0.482587	
mm_11469.1	chr2	32363073	32363273	+	1	NA	NA	NA	-25	NM_001252537	68379	Mm.170508	NM_028412	ENSMUSG00000039205	Ciz1	0610038H21Rik|2900056O04Rik|LSFR1|ZNF356	CDKN1A interacting zinc finger protein 1	protein-coding	0.085000	0.666667	
mm_84254.1	chr9	62510461	62510661	-	1	NA	NA	NA	26483	NM_175484	235431	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.020000	0.487562	
mm_41614.1	chr5	96793391	96793591	+	1	NA	NA	NA	106	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.060000	0.646766	
mm_113939.1	chr13	49682116	49682316	+	1	NA	NA	NA	86	NM_172015	105148	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	0.065000	0.606965	
mm_24515.1	chr3	92689222	92689422	+	1	NA	NA	NA	-2112	NM_027137	69611	Mm.176243	NM_027137	ENSMUSG00000103243	Lce1d	2310037L11Rik|AI415320|Sprrl7	late cornified envelope 1D	protein-coding	0.065000	0.577114	
mm_54192.1	chr6	24514960	24515160	-	1	NA	NA	NA	7	NM_172535	214704	Mm.61131	NM_172535	ENSMUSG00000046192	Iqub	4932408B21Rik|Trs4	IQ motif and ubiquitin domain containing	protein-coding	0.030000	0.542289	
mm_85179.1	chr9	96630535	96630735	-	1	NA	NA	NA	868	NM_053268	114713	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.055000	0.532338	
mm_28029.1	chr3	83046703	83046903	-	1	NA	NA	NA	3060	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.035000	0.557214	
mm_3490.1	chr1	150105773	150105973	+	1	NA	NA	NA	5842	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.283582	
mm_56825.1	chr6	117173525	117173725	-	1	NA	NA	NA	5090	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.025000	0.557214	
mm_100472.1	chr11	120007223	120007423	+	1	NA	NA	NA	-7444	NR_037225	100526518		NR_037225	ENSMUSG00000105524	Mir3065	mir-3065|mmu-mir-3065	microRNA 3065	ncRNA	0.010000	0.407960	
mm_4260.1	chr1	171437459	171437659	+	1	NA	NA	NA	-2	NM_172647	16456	Mm.294882	NM_172647	ENSMUSG00000038235	F11r	9130004G24|AA638916|ESTM33|JAM|JAM-1|JAM-A|Jcam|Jcam1|Ly106	F11 receptor	protein-coding	0.090000	0.641791	
mm_4582.1	chr1	178236406	178236606	+	1	NA	NA	NA	49089	NM_024282	78825	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	0.000000	0.373134	
mm_17111.1	chr2	24349830	24350030	-	1	NA	NA	NA	4559	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.000000	0.477612	
mm_112337.1	chr12	116010039	116010239	-	1	NA	NA	NA	-37585	NM_001004066	56220	Mm.254997	NM_019565	ENSMUSG00000042063	Zfp386	Kzf1|mKIAA4205	zinc finger protein 386 (Kruppel-like)	protein-coding	0.010000	0.437811	
mm_3251.1	chr1	136132938	136133138	+	1	NA	NA	NA	1637	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.015000	0.592040	
mm_86961.1	chr10	25109882	25110082	+	1	NA	NA	NA	90188	NM_001347460	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.000000	0.373134	
mm_53810.1	chr6	146933303	146933503	+	1	NA	NA	NA	21018	NM_001164236	73344	Mm.391543	NM_028509	ENSMUSG00000040163	1700034J05Rik	-	RIKEN cDNA 1700034J05 gene	protein-coding	0.020000	0.537313	
mm_66908.1	chr7	60002889	60003089	-	1	NA	NA	NA	2167	NM_013670	20646	Mm.274995	NM_013670	ENSMUSG00000102252	Snrpn	2410045I01Rik|HCERN3|Peg4|Pwcr1|SMN	small nuclear ribonucleoprotein N	protein-coding	0.005000	0.487562	
mm_68279.1	chr7	105599239	105599439	-	1	NA	NA	NA	777	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.020000	0.512438	
mm_84970.1	chr9	85319422	85319622	-	1	NA	NA	NA	7602	NM_001160378	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.010000	0.398010	
mm_145126.1	chr18	44423445	44423645	+	1	NA	NA	NA	43045	NM_027490	70640	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0.005000	0.472637	
mm_67928.1	chr7	99906128	99906328	-	1	NA	NA	NA	47010	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.000000	0.502488	
mm_162553.1	chr1	171418997	171419197	+	1	NA	NA	NA	64	NM_001164525	226654	Mm.46366	NM_001164525	ENSMUSG00000103711	Tstd1	AV065366|EG226654|Gm4848|KAT	thiosulfate sulfurtransferase (rhodanese)-like domain containing 1	protein-coding	0.030000	0.601990	
mm_84244.1	chr9	62343938	62344138	-	1	NA	NA	NA	2695	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.115000	0.731343	
mm_41604.1	chr5	96374056	96374256	+	1	NA	NA	NA	201	NM_175473	231470	Mm.291120	NM_175473	ENSMUSG00000034687	Fras1	E130113P14Rik|bl|mKIAA1500	Fraser extracellular matrix complex subunit 1	protein-coding	0.140000	0.776119	
mm_36960.1	chr4	109156743	109156943	-	1	NA	NA	NA	-38807	NM_001134791	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.025000	0.502488	
mm_128513.1	chr15	53331836	53332036	-	1	NA	NA	NA	14247	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.000000	0.273632	
mm_108894.1	chr12	100110071	100110271	+	1	NA	NA	NA	-2160	NM_008947	19179	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.070000	0.527363	
mm_25942.1	chr3	131490278	131490478	+	1	NA	NA	NA	-74390	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.130000	0.746269	
mm_85905.1	chr9	111056341	111056541	-	1	NA	NA	NA	803	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.045000	0.562189	
mm_148932.1	chr19	7018612	7018812	+	1	NA	NA	NA	757	NM_153795	108101	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.040000	0.572139	
mm_64518.1	chr7	143830127	143830327	+	1	NA	NA	NA	7060	NM_007856	13360	Mm.249342	NM_007856	ENSMUSG00000058454	Dhcr7	AA409147	7-dehydrocholesterol reductase	protein-coding	0.065000	0.587065	
mm_226.1	chr1	17601853	17602053	+	1	NA	NA	NA	52	NM_053191	94227	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	0.005000	0.398010	-84(ACATATAAAAGC,-,0.00)
mm_35890.1	chr4	49544819	49545019	-	1	NA	NA	NA	4627	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.015000	0.457711	
mm_146113.1	chr18	74268139	74268339	+	1	NA	NA	NA	-49	NM_013594	17190	Mm.22522	NM_013594	ENSMUSG00000024561	Mbd1	Cxxc3|PCM1	methyl-CpG binding domain protein 1	protein-coding	0.090000	0.646766	
mm_77586.1	chr8	123859372	123859572	-	1	NA	NA	NA	737	NM_028536	73420	Mm.157746	NM_028536	ENSMUSG00000031971	Ccsap	1700054N08Rik|AI853424	centriole, cilia and spindle associated protein	protein-coding	0.135000	0.746269	
mm_97439.1	chr11	78178586	78178786	+	1	NA	NA	NA	28	NM_026708	68385	Mm.390375	NM_026708	ENSMUSG00000019437	Tlcd1	-	TLC domain containing 1	protein-coding	0.135000	0.796020	
mm_45008.1	chr5	38491855	38492055	-	1	NA	NA	NA	-8570	NM_001012363	117591	Mm.260137	NM_145559	ENSMUSG00000005107	Slc2a9	Glut9|SLC2A9B|SLC2a9A	solute carrier family 2 (facilitated glucose transporter), member 9	protein-coding	0.020000	0.467662	
mm_157990.1	chrX	94459675	94459875	-	1	NA	NA	NA	17043	NR_045323	100503393	Mm.402891	NR_045323	ENSMUSG00000084904	Gm14827	OTTMUSG00000018126	predicted gene 14827	ncRNA	0.010000	0.507463	
mm_93166.1	chr10	93276466	93276666	-	1	NA	NA	NA	34593	NM_001322268	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.030000	0.527363	
mm_163831.1	chr14	19417561	19417761	-	1	NA	NA	NA	184926	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.353234	
mm_147191.1	chr18	37643968	37644168	-	1	NA	NA	NA	136	NM_175770	24074	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TATA-box binding protein associated factor 7	protein-coding	0.105000	0.601990	
mm_115348.1	chr13	112673270	112673470	+	1	NA	NA	NA	12604	NM_178746	268706	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0.005000	0.323383	
mm_10469.1	chr2	14331066	14331266	+	1	NA	NA	NA	-57232	NM_001012305	277468	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0.020000	0.363184	
mm_39019.1	chr4	152131372	152131572	-	1	NA	NA	NA	-2547	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.070000	0.726368	
mm_22374.1	chr2	181155369	181155569	-	1	NA	NA	NA	1546	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.015000	0.552239	
mm_63416.1	chr7	127470899	127471099	+	1	NA	NA	NA	-615	NM_145589	233895	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.055000	0.552239	63(GGCTTTAAAGAA,-,0.00)
mm_124780.1	chr15	7442301	7442501	+	1	NA	NA	NA	-44006	NM_001289498	268780	Mm.203208	NM_178748	ENSMUSG00000042961	Egflam	5930412K08|AU040377	EGF-like, fibronectin type III and laminin G domains	protein-coding	0.020000	0.452736	
mm_75099.1	chr8	34108701	34108901	-	1	NA	NA	NA	-89	NM_011722	22428	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.060000	0.442786	
mm_42384.1	chr5	114934101	114934301	+	1	NA	NA	NA	-8001	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.000000	0.437811	
mm_105851.1	chr11	113710002	113710202	-	1	NA	NA	NA	-85	NM_029794	52670	Mm.229207	NM_026682	ENSMUSG00000018727	Cpsf4l	0610010C04Rik|1500000C01Rik|D11Ertd636e	cleavage and polyadenylation specific factor 4-like	protein-coding	0.025000	0.577114	51(GTCTAGAAAAGA,-,0.00)
mm_22382.1	chr2	181156753	181156953	-	1	NA	NA	NA	162	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.130000	0.711443	
mm_129109.1	chr15	76069325	76069525	-	1	NA	NA	NA	359	NM_134089	105782	Mm.25568	NM_134089	ENSMUSG00000022568	Scrib	AI118201|CRIB|Crc|SCRIB1|Scrb1|mKIAA0147|vartul	scribbled planar cell polarity	protein-coding	0.160000	0.776119	
mm_83907.1	chr9	56243975	56244175	-	1	NA	NA	NA	-83005	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.020000	0.512438	
mm_116651.1	chr13	49187819	49188019	-	1	NA	NA	NA	372	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.070000	0.691542	
mm_36854.1	chr4	106839936	106840136	-	1	NA	NA	NA	-35029	NM_001347159	329910	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0.100000	0.676617	
mm_37944.1	chr4	133159151	133159351	-	1	NA	NA	NA	28618	NM_153423	242687	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.020000	0.527363	
mm_12036.1	chr2	58762166	58762366	+	1	NA	NA	NA	7082	NM_029692	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.005000	0.427861	
mm_26807.1	chr3	10194616	10194816	-	1	NA	NA	NA	2567	NM_011598	21884	Mm.26654	NM_011598	ENSMUSG00000027528	Fabp9	1700007P10Rik|Perf|Perf15|Tlbp	fatty acid binding protein 9, testis	protein-coding	0.015000	0.422886	
mm_60071.1	chr7	33635046	33635246	+	1	NA	NA	NA	18135	NR_045685	353109	Mm.63867	NR_045685	ENSMUSG00000083896	Scgb2b23-ps	1700028O08Rik|Abpbg23-ps|C2y|Scgb2b1|Scgb2b1-ps	secretoglobin, family 2B, member 23, pseudogene	pseudo	0.000000	0.532338	
mm_112407.1	chr13	3556895	3557095	+	1	NA	NA	NA	18920	NM_008112	14569	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0.030000	0.402985	-43(CCATTAATAGAA,+,0.00)
mm_57724.1	chr6	128890975	128891175	-	1	NA	NA	NA	49	NM_001254946	232406	Mm.30745	NM_001254946	ENSMUSG00000090164	BC035044	-	cDNA sequence BC035044	protein-coding	0.005000	0.427861	
mm_55950.1	chr6	85333327	85333527	-	1	NA	NA	NA	-5	NM_178639	94282	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	0.100000	0.681592	-26(CATTTTAAAAGG,-,0.00)
mm_129208.1	chr15	76519777	76519977	-	1	NA	NA	NA	2252	NM_130893	170729	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.050000	0.641791	
mm_120253.1	chr14	63011597	63011797	+	1	NA	NA	NA	-74	NM_001039121	654458	Mm.390737	NM_001039121	ENSMUSG00000075572	Defb43	BD-43|EG654458|mBD-43	defensin beta 43	protein-coding	0.020000	0.472637	
mm_101159.1	chr11	16972799	16972999	-	1	NA	NA	NA	21489	NM_176982	319701	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.005000	0.338308	-5(CTATTTATAGAC,+,0.00)
mm_16804.1	chr2	10123362	10123562	-	1	NA	NA	NA	7221	NM_010582	16425	Mm.182043	NM_010582	ENSMUSG00000037254	Itih2	AI747202|Intin2|Itih-2	inter-alpha trypsin inhibitor, heavy chain 2	protein-coding	0.015000	0.492537	-25(CTCCATTAAAGA,-,0.00)
mm_67403.1	chr7	79935215	79935415	-	1	NA	NA	NA	-51	NM_027420	70420	Mm.34266	NM_027420	ENSMUSG00000039043	Arpin	2610034B18Rik	actin-related protein 2/3 complex inhibitor	protein-coding	0.075000	0.646766	-85(CCCTTTAAGTCC,+,0.00)
mm_131630.1	chr16	20186415	20186615	+	1	NA	NA	NA	-10281	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.010000	0.517413	
mm_126747.1	chr15	85735717	85735917	+	1	NA	NA	NA	41	NM_011144	19013	Mm.212789	NM_011144	ENSMUSG00000022383	Ppara	4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar	peroxisome proliferator activated receptor alpha	protein-coding	0.105000	0.681592	
mm_169758.1	chr15	9354750	9354950	-	1	NA	NA	NA	19252	NM_144845	223337	Mm.422853	NM_144845	ENSMUSG00000049152	Ugt3a2	AI313915	UDP glycosyltransferases 3 family, polypeptide A2	protein-coding	0.030000	0.542289	
mm_96981.1	chr11	70656507	70656707	+	1	NA	NA	NA	-569	NM_001136062	13808	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.050000	0.577114	
mm_101259.1	chr11	20898589	20898789	-	1	NA	NA	NA	-67581	NM_173752	216551	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.010000	0.527363	-33(TCTTATAAAGGA,+,0.00)
mm_95043.1	chr11	32277500	32277700	+	1	NA	NA	NA	1000	NM_010405	15126	Mm.141758	NM_010405	ENSMUSG00000055609	Hba-x	AI450015|Hbz	hemoglobin X, alpha-like embryonic chain in Hba complex	protein-coding	0.050000	0.562189	
mm_172187.1	chr6	50566375	50566575	-	1	NA	NA	NA	-1	NM_007808	13063	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0.165000	0.701493	
mm_53380.1	chr6	129512563	129512763	+	1	NA	NA	NA	106	NM_001081186	330428	Mm.44237	NM_001081186	ENSMUSG00000030160	Tmem52b	D630042F21Rik	transmembrane protein 52B	protein-coding	0.010000	0.437811	
mm_1534.1	chr1	72849493	72849693	+	1	NA	NA	NA	24206	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.030000	0.582090	
mm_86564.1	chr10	11283116	11283316	+	1	NA	NA	NA	1629	NM_001168297	71865	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0.000000	0.228856	
mm_80890.1	chr9	99575703	99575903	+	1	NA	NA	NA	4	NM_031403	83703	Mm.31324	NM_031403	ENSMUSG00000032469	Dbr1	AW018415	debranching RNA lariats 1	protein-coding	0.080000	0.621891	
mm_176.1	chr1	13668684	13668884	+	1	NA	NA	NA	13	NM_001011873	381246	Mm.311142	NM_001011873	ENSMUSG00000067813	Xkr9	Gm1620|XRG9	X-linked Kx blood group related 9	protein-coding	0.015000	0.368159	
mm_117255.1	chr13	64366917	64367117	-	1	NA	NA	NA	3503	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.035000	0.497512	
mm_78265.1	chr9	21955658	21955858	+	1	NA	NA	NA	5	NM_025870	66962	Mm.46647	NM_025870	ENSMUSG00000051238	Swsap1	2310047B19Rik	SWIM type zinc finger 7 associated protein 1	protein-coding	0.080000	0.621891	
mm_28935.1	chr3	98882065	98882265	-	1	NA	NA	NA	11065	NM_019545	56185	Mm.281874	NM_019545	ENSMUSG00000027870	Hao2	AI325478|Hao-2|Hao3|Haox3	hydroxyacid oxidase 2	protein-coding	0.005000	0.487562	
mm_117997.1	chr13	100492476	100492676	-	1	NA	NA	NA	33	NM_022011	23894	Mm.272533	NM_022011	ENSMUSG00000021639	Gtf2h2	44kDa|BTF2 p44|BTF2-p44|Btf2p44|p44	general transcription factor II H, polypeptide 2	protein-coding	0.085000	0.631841	
mm_3994.1	chr1	164458424	164458624	+	1	NA	NA	NA	-169	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.080000	0.711443	
mm_145730.1	chr18	64264757	64264957	+	1	NA	NA	NA	10498	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.015000	0.477612	
mm_115140.1	chr13	104816457	104816657	+	1	NA	NA	NA	396	NM_026072	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.025000	0.497512	
mm_17232.1	chr2	25574811	25575011	-	1	NA	NA	NA	-40	NM_029293	75454	Mm.458079	NM_029293	ENSMUSG00000036504	Phpt1	1700008C22Rik|PHP|Php14	phosphohistidine phosphatase 1	protein-coding	0.060000	0.631841	
mm_14233.1	chr2	127590245	127590445	+	1	NA	NA	NA	2919	NM_029963	77721	Mm.274601	NM_029963	ENSMUSG00000027374	Mrps5	1620401I16Rik|AI850294	mitochondrial ribosomal protein S5	protein-coding	0.035000	0.572139	
mm_26721.1	chr3	159528728	159528928	+	1	NA	NA	NA	33395	NM_001172093	76131	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	0.000000	0.348259	
mm_129642.1	chr15	80562402	80562602	-	1	NA	NA	NA	-2032	NM_001163189	383075	Mm.297626	NM_001163189	ENSMUSG00000050439	Enthd1	Gm1242|Gm86	ENTH domain containing 1	protein-coding	0.005000	0.393035	
mm_96300.1	chr11	63151029	63151229	+	1	NA	NA	NA	18326	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.020000	0.562189	
mm_18432.1	chr2	60824839	60825039	-	1	NA	NA	NA	56499	NM_001141932	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.005000	0.462687	
mm_28822.1	chr3	96287115	96287315	-	1	NA	NA	NA	6754	NM_010186	14129	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0.015000	0.482587	
mm_36276.1	chr4	63743659	63743859	-	1	NA	NA	NA	1354	NM_177371	326623	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0.005000	0.477612	9(CCCCAGAAAAGC,-,0.00)
mm_63214.1	chr7	126272457	126272657	+	1	NA	NA	NA	-62	NM_145587	104175	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.200000	0.835821	
mm_46674.1	chr5	109461188	109461388	-	1	NA	NA	NA	41275	NM_001104628	384221	Mm.469879	NM_001104628	ENSMUSG00000091879	Vmn2r17	EG384221	vomeronasal 2, receptor 17	protein-coding	0.000000	0.407960	
mm_129950.1	chr15	85036785	85036985	-	1	NA	NA	NA	-177	NM_133750	73225	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0.085000	0.611940	
mm_68638.1	chr7	118275309	118275509	-	1	NA	NA	NA	31502	NR_027879	67745	Mm.483404	NM_183267	ENSMUSG00000055159	4930583K01Rik	-	RIKEN cDNA 4930583K01 gene	ncRNA	0.020000	0.482587	
mm_6921.1	chr1	84840206	84840406	-	1	NA	NA	NA	465	NM_025386	66153	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.075000	0.631841	
mm_152997.1	chr19	29926292	29926492	-	1	NA	NA	NA	1278	NM_133775	77125	Mm.182359	NM_133775	ENSMUSG00000024810	Il33	9230117N10Rik|Il-33|Il1f11|NF-HEV	interleukin 33	protein-coding	0.020000	0.457711	
mm_25084.1	chr3	100489380	100489580	+	1	NA	NA	NA	-288	NM_001142952	74645	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.070000	0.582090	
mm_72436.1	chr8	83087183	83087383	+	1	NA	NA	NA	-78069	NM_001111304	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.005000	0.502488	
mm_166897.1	chr7	28379439	28379639	-	1	NA	NA	NA	-311	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.040000	0.592040	
mm_26445.1	chr3	142635699	142635899	+	1	NA	NA	NA	-11853	NR_105802	102465200		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.020000	0.412935	-87(GTTTTTTAAAGG,-,0.00),-86(TTTTTTAAAGGG,+,0.00)
mm_157612.1	chrX	53776266	53776466	-	1	NA	NA	NA	28	NM_001009549	333473	Mm.327378	NM_001009549	ENSMUSG00000059334	Zfp36l3	AY661338	zinc finger protein 36, C3H type-like 3	protein-coding	0.030000	0.537313	
mm_59928.1	chr7	30423295	30423495	+	1	NA	NA	NA	91	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.045000	0.587065	
mm_162580.1	chr1	178336978	178337178	-	1	NA	NA	NA	706	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.135000	0.746269	
mm_170200.1	chr17	6941784	6941984	+	1	NA	NA	NA	6472	NM_001083945	100037282	Mm.29830	NM_001083945	ENSMUSG00000023806	Rsph3b	Rshl2b	radial spoke 3B homolog (Chlamydomonas)	protein-coding	0.025000	0.388060	
mm_43795.1	chr5	142813900	142814100	+	1	NA	NA	NA	3387	NM_178242	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.050000	0.577114	
mm_81437.1	chr9	109095507	109095707	+	1	NA	NA	NA	171	NM_172775	235611	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.130000	0.741294	
mm_102785.1	chr11	68400967	68401167	-	1	NA	NA	NA	-14241	NM_008744	18208	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0.040000	0.507463	
mm_87473.1	chr10	51491906	51492106	+	1	NA	NA	NA	1108	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.457711	
mm_9464.1	chr1	173227120	173227320	-	1	NA	NA	NA	9	NM_010184	14125	Mm.5266	NM_010184	ENSMUSG00000005339	Fcer1a	FcERI|Fce1a|Fcr-5|fcepsilonri	Fc receptor, IgE, high affinity I, alpha polypeptide	protein-coding	0.010000	0.492537	
mm_87688.1	chr10	59368984	59369184	+	1	NA	NA	NA	-34601	NM_023530	69836	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	0.015000	0.432836	
mm_48913.1	chr6	4003834	4004034	+	1	NA	NA	NA	-53	NM_025331	66066	Mm.25547	NM_025331	ENSMUSG00000032766	Gng11	0610037B21Rik	guanine nucleotide binding protein (G protein), gamma 11	protein-coding	0.015000	0.582090	
mm_116663.1	chr13	49200502	49200702	-	1	NA	NA	NA	13055	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.025000	0.527363	
mm_171250.1	chr3	7910252	7910452	+	1	NA	NA	NA	44535	NR_040587	75476	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	0.040000	0.512438	-21(CCTTAAATAAGG,+,0.00)
mm_53737.1	chr6	145121797	145121997	+	1	NA	NA	NA	158	NM_008511	16970	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.035000	0.557214	
mm_21021.1	chr2	152397962	152398162	-	1	NA	NA	NA	-16	NM_011438	20667	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.175000	0.796020	
mm_58211.1	chr6	144097334	144097534	-	1	NA	NA	NA	112134	NM_001113559	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.000000	0.313433	
mm_31745.1	chr4	63344213	63344413	+	1	NA	NA	NA	-243	NM_008768	18405	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding	0.010000	0.527363	
mm_138131.1	chr17	34187626	34187826	+	1	NA	NA	NA	170	NM_013683	21354	Mm.482076	NM_013683	ENSMUSG00000037321	Tap1	ABC17|APT1|Abcb2|Ham-1|Ham1|MTP1|PSF1|RING4|TAP|Tap-1|Y3	transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.075000	0.601990	
mm_95780.1	chr11	54909750	54909950	+	1	NA	NA	NA	6996	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.015000	0.482587	
mm_164088.1	chr15	8444771	8444971	-	1	NA	NA	NA	-408	NM_201232	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.135000	0.661692	
mm_15971.1	chr2	166080620	166080820	+	1	NA	NA	NA	74565	NM_001252578	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.035000	0.616915	
mm_55074.1	chr6	49110956	49111156	-	1	NA	NA	NA	37261	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.010000	0.517413	
mm_84812.1	chr9	77399231	77399431	-	1	NA	NA	NA	85	NR_040378	70487	Mm.58958	NR_040378	ENSMUSG00000099170	5730403I07Rik	-	RIKEN cDNA 5730403I07 gene	ncRNA	0.025000	0.457711	79(CCTTTAAAATAG,+,0.00)
mm_47476.1	chr5	123720969	123721169	-	1	NA	NA	NA	-25	NM_027494	70650	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0.050000	0.582090	
mm_1323.1	chr1	65100533	65100733	+	1	NA	NA	NA	2730	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.040000	0.562189	62(TCTCATAAAGCC,+,0.00)
mm_152513.1	chr19	11279338	11279538	-	1	NA	NA	NA	4375	NM_183190	269063	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	0.015000	0.452736	-35(GGCTATAAAAAG,-,0.00),2(CGATTTAAATGG,-,0.00)
mm_95126.1	chr11	34091354	34091554	+	1	NA	NA	NA	44253	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.020000	0.497512	
mm_6310.1	chr1	71590726	71590926	-	1	NA	NA	NA	33670	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.040000	0.492537	
mm_143569.1	chr17	74294968	74295168	-	1	NA	NA	NA	-205	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.170000	0.830846	
mm_115253.1	chr13	110397394	110397594	+	1	NA	NA	NA	2450	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.010000	0.383085	
mm_150157.1	chr19	32224446	32224646	+	1	NA	NA	NA	-13533	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.010000	0.447761	-34(GGCTTTATATGG,-,0.00),-32(CTTTATATGGCT,+,0.00)
mm_160470.1	chr8	115706558	115706758	-	1	NA	NA	NA	236	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.095000	0.696517	
mm_85628.1	chr9	107616153	107616353	-	1	NA	NA	NA	-7012	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.010000	0.497512	
mm_67008.1	chr7	65347456	65347656	-	1	NA	NA	NA	23688	NM_001163574	21872	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.005000	0.323383	
mm_17596.1	chr2	30796587	30796787	-	1	NA	NA	NA	5050	NM_198000	73598	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.015000	0.592040	-71(GTTTTAAAACCC,+,0.00)
mm_80352.1	chr9	75184275	75184475	+	1	NA	NA	NA	-47639	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.020000	0.562189	
mm_111003.1	chr12	78861514	78861714	-	1	NA	NA	NA	24	NM_023721	73834	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	0.075000	0.636816	
mm_96722.1	chr11	69666383	69666583	+	1	NA	NA	NA	-313	NR_110993	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.005000	0.492537	
mm_133343.1	chr16	81203275	81203475	+	1	NA	NA	NA	2678	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.005000	0.308458	
mm_22967.1	chr3	32708128	32708328	+	1	NA	NA	NA	-318	NM_019673	56456	Mm.41077	NM_019673	ENSMUSG00000027671	Actl6a	2810432C06Rik|AI851094|ARP4|Actl6|Baf53a|C79802	actin-like 6A	protein-coding	0.010000	0.437811	
mm_43910.1	chr5	144256024	144256224	+	1	NA	NA	NA	899	NM_018772	55950	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.025000	0.562189	
mm_78151.1	chr9	21016999	21017199	+	1	NA	NA	NA	1159	NM_010493	15894	Mm.435508	NM_010493	ENSMUSG00000037405	Icam1	CD54|Icam-1|Ly-47|MALA-2	intercellular adhesion molecule 1	protein-coding	0.005000	0.427861	
mm_163306.1	chr12	3309441	3309641	-	1	NA	NA	NA	428	NM_016676	19325	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.130000	0.711443	
mm_172123.1	chr6	3201143	3201343	+	1	NA	NA	NA	-87276	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.090000	0.601990	
mm_163361.1	chr12	32767476	32767676	-	1	NA	NA	NA	-52759	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.000000	0.472637	
mm_3479.1	chr1	150105432	150105632	+	1	NA	NA	NA	5501	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.015000	0.492537	
mm_75493.1	chr8	50555882	50556082	-	1	NA	NA	NA	187870	NR_046067	100039954	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.005000	0.323383	
mm_151598.1	chr19	3510795	3510995	-	1	NA	NA	NA	64854	NM_001164159	52036	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.000000	0.258706	
mm_64869.1	chr7	14122948	14123148	-	1	NA	NA	NA	-55	NM_001101586	629203	Mm.482066	NM_001101586	ENSMUSG00000074375	Sult2a3	EG629203|Gm6955	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 3	protein-coding	0.005000	0.338308	
mm_76254.1	chr8	83733398	83733598	-	1	NA	NA	NA	7813	NM_001163029	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.015000	0.472637	
mm_138230.1	chr17	34377039	34377239	+	1	NA	NA	NA	7	NM_001111094	100038862	Mm.440426	NM_201405	ENSMUSG00000062638	Btnl1	Btnl3|Gm316|Gm33	butyrophilin-like 1	protein-coding	0.000000	0.487562	
mm_19994.1	chr2	118728256	118728456	-	1	NA	NA	NA	82	NM_177568	18796	Mm.215156	NM_177568	ENSMUSG00000040061	Plcb2	AI550384|B230205M18Rik|B230399N12	phospholipase C, beta 2	protein-coding	0.020000	0.552239	
mm_95663.1	chr11	53771663	53771863	+	1	NA	NA	NA	1290	NM_001159396	16362	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.020000	0.437811	
mm_135101.1	chr16	35413086	35413286	-	1	NA	NA	NA	-49268	NM_133704	317717	Mm.259164	NM_133704	ENSMUSG00000034473	Sec22a	1810005C06Rik|Sec22l2	SEC22 homolog A, vesicle trafficking protein	protein-coding	0.005000	0.402985	
mm_38807.1	chr4	148166270	148166470	-	1	NA	NA	NA	5702	NM_176848	230904	Mm.262287	NM_176848	ENSMUSG00000041556	Fbxo2	FBG1|FBX2|Fbs1|Fbs2|NFB42|Prpl4	F-box protein 2	protein-coding	0.050000	0.532338	
mm_124454.1	chr14	119007372	119007572	-	1	NA	NA	NA	69540	NM_008929	100037258	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.020000	0.462687	
mm_58092.1	chr6	137516907	137517107	-	1	NA	NA	NA	2888	NM_001271589	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.025000	0.532338	
mm_127832.1	chr15	6592594	6592794	-	1	NA	NA	NA	12847	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.000000	0.393035	70(TGCTTTAAAAAA,-,0.00),83(CTCTTTTAAAGA,-,0.00),84(TCTTTTAAAGAT,+,0.00)
mm_146235.1	chr18	77185747	77185947	+	1	NA	NA	NA	0	NM_153124	225742	Mm.365178	NM_013666	ENSMUSG00000025425	St8sia5	ST8SiaV|Siat8e	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5	protein-coding	0.115000	0.751244	
mm_102928.1	chr11	69600656	69600856	-	1	NA	NA	NA	5204	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.010000	0.522388	
mm_1615.1	chr1	74391468	74391668	+	1	NA	NA	NA	-41	NM_153088	227292	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.115000	0.706468	62(GCCCTTTTAAGG,-,0.00),63(CCCTTTTAAGGG,-,0.00),64(CCTTTTAAGGGG,+,0.00)
mm_106491.1	chr11	120237262	120237462	-	1	NA	NA	NA	4415	NM_198423	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.105000	0.681592	
mm_82939.1	chr9	35305211	35305411	-	1	NA	NA	NA	24206	NR_040715	71133	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.020000	0.378109	
mm_9075.1	chr1	168431168	168431368	-	1	NA	NA	NA	901	NM_001291508	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.025000	0.427861	
mm_53753.1	chr6	145341388	145341588	+	1	NA	NA	NA	-46137	NR_003625	381827	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	0.070000	0.542289	
mm_116318.1	chr13	37729727	37729927	-	1	NA	NA	NA	-96211	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.010000	0.447761	
mm_92004.1	chr10	62327573	62327773	-	1	NA	NA	NA	12748	NM_001146100	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.035000	0.606965	
mm_78542.1	chr9	35305178	35305378	+	1	NA	NA	NA	24173	NR_040715	71133	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.020000	0.358209	
mm_169615.1	chr15	38037818	38038018	-	1	NA	NA	NA	40936	NM_001112721	70790	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.040000	0.522388	
mm_127085.1	chr15	97729334	97729534	+	1	NA	NA	NA	1971	NM_001168693	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.010000	0.537313	
mm_32351.1	chr4	104936199	104936399	+	1	NA	NA	NA	22843	NM_001285952	242594	Mm.65181	NM_001162980	ENSMUSG00000078612	1700024P16Rik	C1orf168|Gm620	RIKEN cDNA 1700024P16 gene	protein-coding	0.030000	0.532338	
mm_133903.1	chr16	97548597	97548797	+	1	NA	NA	NA	12614	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.005000	0.338308	
mm_154533.1	chrM	13724	13924	-	1	NA	NA	NA	NA	NA									0.005000	0.313433	
mm_107516.1	chr12	40445904	40446104	+	1	NA	NA	NA	-49	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.105000	0.666667	
mm_101517.1	chr11	32527465	32527665	-	1	NA	NA	NA	9	NM_027031	69306	Mm.288704	NM_027031	ENSMUSG00000044056	Efcab9	1700007I06Rik|4930403C08Rik	EF-hand calcium binding domain 9	protein-coding	0.015000	0.507463	
mm_91980.1	chr10	61680168	61680368	-	1	NA	NA	NA	22	NR_126477	75539		NR_126477		1700022H01Rik	-	RIKEN cDNA 1700022H01 gene	ncRNA	0.120000	0.706468	
mm_96642.1	chr11	69327764	69327964	+	1	NA	NA	NA	1606	NM_010599	16499	Mm.232472	NM_010599	ENSMUSG00000018470	Kcnab3	C330022D06Rik|Kcnab4|mKv(beta)4	potassium voltage-gated channel, shaker-related subfamily, beta member 3	protein-coding	0.020000	0.487562	
mm_78117.1	chr9	20643260	20643460	+	1	NA	NA	NA	42	NM_025401	66177	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.045000	0.552239	
mm_129882.1	chr15	83464505	83464705	-	1	NA	NA	NA	1	NM_001159509	23970	Mm.23978	NM_011862	ENSMUSG00000016664	Pacsin2	AI197433	protein kinase C and casein kinase substrate in neurons 2	protein-coding	0.130000	0.736318	
mm_99086.1	chr11	99420915	99421115	+	1	NA	NA	NA	1244	NM_010661	268482	Mm.436651	NM_010661	ENSMUSG00000020912	Krt12	AI835216|K12|Krt-12|Krt1-12	keratin 12	protein-coding	0.005000	0.333333	
mm_13165.1	chr2	92609394	92609594	+	1	NA	NA	NA	9787	NM_023850	76969	Mm.38021	NM_023850	ENSMUSG00000027221	Chst1	2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KSGAL6ST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding	0.000000	0.502488	-35(ACCTTTATAGAC,+,0.00),-33(CTTTATAGACAG,+,0.00)
mm_119242.1	chr14	33589127	33589327	+	1	NA	NA	NA	-43	NM_008978	19256	Mm.8019	NM_008978	ENSMUSG00000021940	Ptpn20	typ	protein tyrosine phosphatase, non-receptor type 20	protein-coding	0.055000	0.656716	
mm_138768.1	chr17	37071624	37071824	+	1	NA	NA	NA	14512	NM_146477	258469	Mm.271392	NM_146477	ENSMUSG00000056600	Olfr90	MOR256-21|bM573K1.2	olfactory receptor 90	protein-coding	0.000000	0.363184	0(AGCTATTTAAAG,-,0.00)
mm_153583.1	chr19	43502861	43503061	-	1	NA	NA	NA	21644	NM_010324	14718	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.045000	0.557214	
mm_71294.1	chr8	41217994	41218194	+	1	NA	NA	NA	-2938	NM_145594	234199	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding	0.030000	0.477612	
mm_130937.1	chr15	103215223	103215423	-	1	NA	NA	NA	29	NM_007626	12419	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0.040000	0.636816	
mm_73388.1	chr8	105693870	105694070	+	1	NA	NA	NA	3064	NM_001033320	234695	Mm.471640	NM_001033320	ENSMUSG00000050357	Carmil2	CG1399-PB|D130029J02Rik|Gm585|Rltpr	capping protein regulator and myosin 1 linker 2	protein-coding	0.100000	0.736318	
mm_111411.1	chr12	91384253	91384453	-	1	NA	NA	NA	56	NM_181815	75216	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0.100000	0.666667	
mm_54019.1	chr6	8647702	8647902	-	1	NA	NA	NA	110656	NM_001252266	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.005000	0.492537	
mm_102438.1	chr11	59523626	59523826	-	1	NA	NA	NA	-17086	NM_172941	268417	Mm.239793	NM_172941	ENSMUSG00000020472	Zkscan17	Nizp1|Zfp496|Znf496	zinc finger with KRAB and SCAN domains 17	protein-coding	0.015000	0.452736	
mm_107630.1	chr12	51829269	51829469	+	1	NA	NA	NA	167	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.115000	0.721393	
mm_29253.1	chr3	107219569	107219769	-	1	NA	NA	NA	2063	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.020000	0.542289	
mm_1535.1	chr1	72849517	72849717	+	1	NA	NA	NA	24230	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.030000	0.587065	
mm_127458.1	chr15	101272051	101272251	+	1	NA	NA	NA	5305	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.025000	0.547264	15(CAGCCTAAAAGG,-,0.00),17(GCCTAAAAGGGC,+,0.00)
mm_75107.1	chr8	34146692	34146892	-	1	NA	NA	NA	-53	NM_026609	68192	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	0.175000	0.810945	
mm_135298.1	chr16	38622275	38622475	-	1	NA	NA	NA	59561	NM_026407	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.000000	0.412935	
mm_166294.1	chr5	104094549	104094749	+	1	NA	NA	NA	-17041	NM_001163772	100271704	Mm.366664	NM_001163772	ENSMUSG00000091034	Gm17660	Scpppq1	predicted gene, 17660	protein-coding	0.025000	0.427861	
mm_8194.1	chr1	138117492	138117692	-	1	NA	NA	NA	57534	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.288557	
mm_10073.1	chr1	194999358	194999558	-	1	NA	NA	NA	-17941	NR_015566	320977	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0.000000	0.457711	
mm_161296.1	chr14	27652775	27652975	+	1	NA	NA	NA	30468	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	0.030000	0.532338	
mm_2969.1	chr1	133046099	133046299	+	1	NA	NA	NA	187	NM_001099276	240752	Mm.387308	NM_001099276	ENSMUSG00000026447	Pik3c2b	C330011J12Rik|Gm199|PI3K-C2beta|PI3KC2beta	phosphoinositide-3-kinase, class 2, beta polypeptide	protein-coding	0.135000	0.741294	
mm_24083.1	chr3	87952967	87953167	+	1	NA	NA	NA	4374	NM_007759	12904	Mm.4757	NM_007759	ENSMUSG00000004885	Crabp2	AI893628|Crabp-2|CrabpII	cellular retinoic acid binding protein II	protein-coding	0.040000	0.542289	
mm_97172.1	chr11	75531611	75531811	+	1	NA	NA	NA	17	NM_173388	215113	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.060000	0.597015	
mm_66163.1	chr7	31156281	31156481	-	1	NA	NA	NA	-5331	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.045000	0.601990	
mm_27202.1	chr3	35722840	35723040	-	1	NA	NA	NA	-31198	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.020000	0.457711	-30(CTTTTAAGAGGT,+,0.00),26(GCTCATATAAGC,-,0.00)
mm_132915.1	chr16	49078790	49078990	+	1	NA	NA	NA	21404	NM_001166210	667772	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0.000000	0.328358	-34(GTTTTAATAGCT,+,0.00)
mm_143906.1	chr17	84958417	84958617	-	1	NA	NA	NA	516	NM_001159496	19043	Mm.249695	NM_011151	ENSMUSG00000061130	Ppm1b	PP2CB	protein phosphatase 1B, magnesium dependent, beta isoform	protein-coding	0.165000	0.781095	
mm_99250.1	chr11	101087203	101087403	+	1	NA	NA	NA	13	NM_001159384	21428	Mm.628	NM_011550	ENSMUSG00000017801	Mlx	Tcfl4|Tf4|bHLHd13	MAX-like protein X	protein-coding	0.105000	0.646766	
mm_170419.1	chr18	68692171	68692371	+	1	NA	NA	NA	-47129	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0.055000	0.527363	-63(AACTTTAAATGG,-,0.00)
mm_137459.1	chr17	26571070	26571270	+	1	NA	NA	NA	9658	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.020000	0.567164	
mm_28308.1	chr3	89238619	89238819	-	1	NA	NA	NA	6294	NR_121683	360213	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.040000	0.706468	
mm_128036.1	chr15	25364104	25364304	-	1	NA	NA	NA	49560	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.085000	0.587065	
mm_102188.1	chr11	54248907	54249107	-	1	NA	NA	NA	892	NM_009969	12981	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	0.005000	0.457711	
mm_12575.1	chr2	73271833	73272033	+	1	NA	NA	NA	7	NM_001005343	381373	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0.115000	0.691542	
mm_62388.1	chr7	100938798	100938998	+	1	NA	NA	NA	-6737	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.055000	0.582090	
mm_86497.1	chr10	6788498	6788698	+	1	NA	NA	NA	22	NM_001039652	18390	Mm.438000	NM_011013	ENSMUSG00000000766	Oprm1	M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR	opioid receptor, mu 1	protein-coding	0.030000	0.572139	
mm_30277.1	chr3	147204540	147204740	-	1	NA	NA	NA	352273	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.000000	0.417910	
mm_145363.1	chr18	56678555	56678755	+	1	NA	NA	NA	-29158	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.060000	0.592040	
mm_89023.1	chr10	82569042	82569242	+	1	NA	NA	NA	54086	NM_001135569	544717	Mm.334867	NM_001135567	ENSMUSG00000063320	1190007I07Rik	-	RIKEN cDNA 1190007I07 gene	protein-coding	0.005000	0.442786	-33(CAGTATAAATGG,-,0.00)
mm_81287.1	chr9	108306378	108306578	+	1	NA	NA	NA	318	NM_016802	11848	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	0.145000	0.721393	
mm_42277.1	chr5	114155330	114155530	+	1	NA	NA	NA	-10088	NM_133904	100705	Mm.81793	NM_133904	ENSMUSG00000042010	Acacb	AI597064|AW743042|Acc2|Accb	acetyl-Coenzyme A carboxylase beta	protein-coding	0.005000	0.592040	
mm_129724.1	chr15	81960762	81960962	-	1	NA	NA	NA	68	NM_001282040	29858	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	0.140000	0.766169	
mm_43143.1	chr5	125441574	125441774	+	1	NA	NA	NA	106	NM_029752	76809	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	0.110000	0.761194	
mm_22893.1	chr3	30791802	30792002	+	1	NA	NA	NA	-974	NM_027016	69276	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	0.000000	0.338308	
mm_69221.1	chr7	127588144	127588344	-	1	NA	NA	NA	351	NM_001033040	233899	Mm.25220	NM_001033040	ENSMUSG00000057176	Ccdc189	Gm166	coiled-coil domain containing 189	protein-coding	0.060000	0.552239	
mm_114268.1	chr13	58128918	58129118	+	1	NA	NA	NA	-462	NM_029872	77134	Mm.490274	NM_029872	ENSMUSG00000007836	Hnrnpa0	1110055B05Rik|3010025E17Rik|Hnrpa0|hnRNP A0	heterogeneous nuclear ribonucleoprotein A0	protein-coding	0.135000	0.701493	
mm_24028.1	chr3	87535784	87535984	+	1	NA	NA	NA	10306	NM_012051	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.030000	0.611940	
mm_126593.1	chr15	82354320	82354520	+	1	NA	NA	NA	-129	NM_025987	67130	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	0.085000	0.621891	
mm_4721.1	chr1	181144342	181144542	+	1	NA	NA	NA	-238	NM_026171	67459	Mm.263464	NM_026171	ENSMUSG00000026516	Nvl	1200009I24Rik	nuclear VCP-like	protein-coding	0.035000	0.482587	
mm_155476.1	chrX	73641356	73641556	+	1	NA	NA	NA	2015	NM_029352	75590	Mm.16479	NM_029352	ENSMUSG00000031383	Dusp9	Dusp4|Mpk4|Pyst3	dual specificity phosphatase 9	protein-coding	0.020000	0.582090	
mm_133363.1	chr16	84703540	84703740	+	1	NA	NA	NA	-9383	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.025000	0.512438	
mm_52456.1	chr6	113690866	113691066	+	1	NA	NA	NA	-6084	NM_001347356	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.030000	0.582090	
mm_138242.1	chr17	34564238	34564438	+	1	NA	NA	NA	43	NM_010929	18132	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	0.025000	0.641791	
mm_99376.1	chr11	101984793	101984993	+	1	NA	NA	NA	-102	NM_028207	72349	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	0.110000	0.721393	
mm_90534.1	chr10	128086281	128086481	+	1	NA	NA	NA	1095	NR_030442	751518		NR_030442	ENSMUSG00000093245	Mir677	Mirn677|mir-677|mmu-mir-677	microRNA 677	ncRNA	0.015000	0.482587	
mm_3528.1	chr1	150167318	150167518	+	1	NA	NA	NA	-2470	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.000000	0.412935	
mm_18595.1	chr2	66750535	66750735	-	1	NA	NA	NA	34275	NM_009135	20272	Mm.38127	NM_009135	ENSMUSG00000034810	Scn7a	1110034K09Rik|AI642000|NaG|Nav2|Nav2.3|Nax|Scn6a	sodium channel, voltage-gated, type VII, alpha	protein-coding	0.010000	0.263682	
mm_14075.1	chr2	122798082	122798282	+	1	NA	NA	NA	16183	NM_021507	59010	Mm.28986	NM_021507	ENSMUSG00000005803	Sqrdl	0610039J17Rik|4930557M22Rik|SQOR	sulfide quinone reductase-like (yeast)	protein-coding	0.015000	0.527363	
mm_18628.1	chr2	69206069	69206269	-	1	NA	NA	NA	44	NM_025565	66442	Mm.272969	NM_025565	ENSMUSG00000005233	Spc25	2600017H08Rik|2610205L13Rik|Spbc25	SPC25, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	0.075000	0.626866	
mm_3833.1	chr1	159930971	159931171	+	1	NA	NA	NA	-113309	NR_028111	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.005000	0.447761	
mm_18763.1	chr2	73454724	73454924	-	1	NA	NA	NA	-935	NM_001289722	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.055000	0.547264	
mm_81835.1	chr9	118478530	118478730	+	1	NA	NA	NA	441	NM_010136	13813	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	0.075000	0.641791	-34(GCCTTTATAACC,+,0.00)
mm_132674.1	chr16	42907524	42907724	+	1	NA	NA	NA	-21	NM_001285805	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.015000	0.487562	
mm_48119.1	chr5	137139004	137139204	-	1	NA	NA	NA	-22897	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.025000	0.487562	
mm_61144.1	chr7	57590440	57590640	+	1	NA	NA	NA	22	NM_001038701	14402	Mm.8004	NM_008071	ENSMUSG00000033676	Gabrb3	A230092K12Rik|AW049585|Cp1|Gabrb-3|beta3	gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	protein-coding	0.060000	0.666667	
mm_129953.1	chr15	85042175	85042375	-	1	NA	NA	NA	5213	NM_133750	73225	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0.000000	0.333333	
mm_171386.1	chr4	12124202	12124402	+	1	NA	NA	NA	-15815	NM_028226	72397	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	0.035000	0.666667	65(GGGTATAAATGG,-,0.00)
mm_160845.1	chr11	50850485	50850685	+	1	NA	NA	NA	-100	NM_173372	108072	Mm.134265	NM_173372	ENSMUSG00000000617	Grm6	BC021919|Gm3|Gprc1f|mGluR6|nerg1|nob2|nob3|nob4	glutamate receptor, metabotropic 6	protein-coding	0.015000	0.492537	
mm_2001.1	chr1	87126922	87127122	+	1	NA	NA	NA	2014	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.045000	0.577114	
mm_66836.1	chr7	48880885	48881085	-	1	NA	NA	NA	56	NM_001013368	108961	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.090000	0.656716	
mm_3545.1	chr1	150407253	150407453	+	1	NA	NA	NA	-14298	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.025000	0.398010	
mm_38716.1	chr4	145228974	145229174	-	1	NA	NA	NA	17796	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.010000	0.557214	
mm_42708.1	chr5	120431798	120431998	+	1	NA	NA	NA	12	NM_008499	16873	Mm.5151	NM_008499	ENSMUSG00000029595	Lhx5	Lim2	LIM homeobox protein 5	protein-coding	0.115000	0.661692	
mm_161339.1	chr14	51552838	51553038	+	1	NA	NA	NA	148	NM_001013816	434459	Mm.359230	NM_001013816	ENSMUSG00000079244	Gm5622	EG434459	predicted gene 5622	protein-coding	0.000000	0.557214	
mm_98116.1	chr11	87121482	87121682	+	1	NA	NA	NA	-5493	NM_197987	68729	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.000000	0.343284	
mm_97179.1	chr11	75532174	75532374	+	1	NA	NA	NA	162	NM_001199283	215113	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.025000	0.572139	
mm_74951.1	chr8	25976653	25976853	-	1	NA	NA	NA	-9	NM_029884	52120	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	0.120000	0.736318	
mm_34598.1	chr4	150236693	150236893	+	1	NA	NA	NA	-404	NM_023119	13806	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	0.105000	0.706468	
mm_92304.1	chr10	75131595	75131795	-	1	NA	NA	NA	70799	NM_001081412	110279	Mm.333722	NM_001081412	ENSMUSG00000009681	Bcr	5133400C09Rik|AI561783|AI853148|mKIAA3017	breakpoint cluster region	protein-coding	0.035000	0.582090	
mm_84199.1	chr9	60649644	60649844	-	1	NA	NA	NA	37790	NM_001311095	102747	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0.045000	0.592040	
mm_126640.1	chr15	83771955	83772155	+	1	NA	NA	NA	-7968	NM_172610	223726	Mm.36395	NM_172610	ENSMUSG00000041708	Mpped1	6230403M19|AW456965|D15Bwg0669e	metallophosphoesterase domain containing 1	protein-coding	0.000000	0.502488	
mm_8120.1	chr1	136131080	136131280	-	1	NA	NA	NA	3	NR_046168	329253	Mm.487858	NR_046167	ENSMUSG00000086264	Gm15850	6530439I21|OTTMUSG00000026868	predicted gene 15850	ncRNA	0.045000	0.582090	-87(GCCTTTAAAGAG,+,0.00),-87(GCCTTTAAAGAG,-,0.00),-85(CTTTAAAGAGAC,+,0.00)
mm_166071.1	chr4	135756678	135756878	-	1	NA	NA	NA	-2937	NM_001085509	242702	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	0.025000	0.502488	
mm_79438.1	chr9	56089877	56090077	+	1	NA	NA	NA	1	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.015000	0.671642	
mm_119617.1	chr14	51114361	51114561	+	1	NA	NA	NA	-2092	NM_203508	219026	Mm.297297	NM_203508	ENSMUSG00000072575	Eddm3b	Fam12|Gm75	epididymal protein 3B	protein-coding	0.015000	0.517413	
mm_129650.1	chr15	80711900	80712100	-	1	NA	NA	NA	687	NM_144812	213988	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.115000	0.711443	
mm_163750.1	chr13	119756030	119756230	+	1	NA	NA	NA	-248	NM_175538	245269	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0.040000	0.562189	
mm_8426.1	chr1	152524736	152524936	-	1	NA	NA	NA	100381	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.030000	0.507463	
mm_4162.1	chr1	171029296	171029496	+	1	NA	NA	NA	10470	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.010000	0.447761	
mm_27527.1	chr3	57387623	57387823	-	1	NA	NA	NA	-37687	NM_145539	229302	Mm.26618	NM_145539	ENSMUSG00000027801	Tm4sf4	Iltmp	transmembrane 4 superfamily member 4	protein-coding	0.010000	0.412935	
mm_86110.1	chr9	115310467	115310667	-	1	NA	NA	NA	-146	NM_024222	68292	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0.085000	0.701493	
mm_101493.1	chr11	31779530	31779730	-	1	NA	NA	NA	44917	NR_102310	414116	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.000000	0.353234	
mm_91248.1	chr10	22731261	22731461	-	1	NA	NA	NA	86	NM_011603	237336	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.105000	0.666667	
mm_103579.1	chr11	78165436	78165636	-	1	NA	NA	NA	14	NM_009423	22032	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0.165000	0.825871	
mm_35439.1	chr4	39259693	39259893	-	1	NA	NA	NA	-190500	NM_001081095	75471	Mm.23522	NM_001081095	ENSMUSG00000028287	1700009N14Rik	AI429145	RIKEN cDNA 1700009N14 gene	protein-coding	0.010000	0.447761	
mm_9038.1	chr1	167243046	167243246	-	1	NA	NA	NA	41981	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.015000	0.502488	
mm_55172.1	chr6	51920228	51920428	-	1	NA	NA	NA	92221	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.010000	0.442786	
mm_76941.1	chr8	105942283	105942483	-	1	NA	NA	NA	1019	NM_008490	16816	Mm.1593	NM_008490	ENSMUSG00000035237	Lcat	AI046659|D8Wsu61e	lecithin cholesterol acyltransferase	protein-coding	0.020000	0.522388	
mm_50779.1	chr6	53681028	53681228	+	1	NA	NA	NA	107754	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.045000	0.666667	
mm_113121.1	chr13	24518113	24518313	+	1	NA	NA	NA	-63976	NM_001286100	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.000000	0.537313	
mm_12871.1	chr2	83879011	83879211	+	1	NA	NA	NA	62115	NM_027964	71861	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.015000	0.333333	
mm_84531.1	chr9	67049554	67049754	-	1	NA	NA	NA	-441	NM_001164251	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.045000	0.671642	
mm_134110.1	chr16	9995549	9995749	-	1	NA	NA	NA	-3116	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.075000	0.621891	
mm_74675.1	chr8	13974626	13974826	-	1	NA	NA	NA	51	NM_173744	72148	Mm.5727	NM_173744	ENSMUSG00000050052	Tdrp	2610019F03Rik	testis development related protein	protein-coding	0.105000	0.756219	
mm_115747.1	chr13	17993234	17993434	-	1	NA	NA	NA	17	NM_025904	67008	Mm.252918	NM_025904	ENSMUSG00000075054	Yae1d1	1600012F09Rik	Yae1 domain containing 1	protein-coding	0.125000	0.681592	
mm_126548.1	chr15	82036361	82036561	+	1	NA	NA	NA	11137	NM_011482	20826	Mm.299312	NM_011482	ENSMUSG00000063480	Nhp2l1	FA-1|Fta1|Snu13|Ssfa1	NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	protein-coding	0.015000	0.402985	
mm_22558.1	chr3	9853165	9853365	+	1	NA	NA	NA	-19586	NM_001195031	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.015000	0.517413	
mm_106590.1	chr11	120730208	120730408	-	1	NA	NA	NA	1713	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.020000	0.557214	
mm_159848.1	chr5	136986890	136987090	+	1	NA	NA	NA	-29	NM_011962	26433	Mm.251003	NM_011962	ENSMUSG00000004846	Plod3	AI414586|LH3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	protein-coding	0.060000	0.522388	
mm_57591.1	chr6	127769053	127769253	-	1	NA	NA	NA	6	NM_201371	381813	Mm.39750	NM_201371	ENSMUSG00000030350	Prmt8	Hrmt1l3|Hrmt1l4	protein arginine N-methyltransferase 8	protein-coding	0.140000	0.766169	
mm_55648.1	chr6	72362300	72362500	-	1	NA	NA	NA	32	NR_138581	66510	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0.060000	0.572139	
mm_76088.1	chr8	79399405	79399605	-	1	NA	NA	NA	-37	NM_008539	17125	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.120000	0.696517	
mm_138736.1	chr17	36970719	36970919	+	1	NA	NA	NA	10418	NM_029747	76797	Mm.159787	NM_029747	ENSMUSG00000064308	2410137M14Rik	-	RIKEN cDNA 2410137M14 gene	protein-coding	0.030000	0.547264	
mm_140716.1	chr17	15368486	15368686	-	1	NA	NA	NA	7237	NM_007865	13388	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta-like 1 (Drosophila)	protein-coding	0.035000	0.537313	
mm_147962.1	chr18	67133977	67134177	-	1	NA	NA	NA	517	NM_010307	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.085000	0.656716	
mm_16885.1	chr2	13011472	13011672	-	1	NA	NA	NA	-708	NM_153155	227580	Mm.229322	NM_153155	ENSMUSG00000049630	C1ql3	1110065A22Rik|AI661623|C1ql|C1qtnf13|CTRP13|K100	C1q-like 3	protein-coding	0.065000	0.616915	
mm_83752.1	chr9	51274804	51275004	-	1	NA	NA	NA	3650	NM_001195681	100502940	Mm.235705	NM_001195681	ENSMUSG00000079559	Gm684	-	predicted gene 684	protein-coding	0.010000	0.472637	
mm_104784.1	chr11	98587123	98587323	-	1	NA	NA	NA	22	NM_025661	66612	Mm.180546	NM_025661	ENSMUSG00000038150	Ormdl3	2810011N17Rik|AI315223	ORM1-like 3 (S. cerevisiae)	protein-coding	0.105000	0.681592	
mm_72784.1	chr8	86745582	86745782	+	1	NA	NA	NA	-17	NR_027829	666945	Mm.391806	NR_027829		Gm10638	ENSMUSG00000074178	predicted gene 10638	ncRNA	0.160000	0.781095	
mm_127964.1	chr15	11990933	11991133	-	1	NA	NA	NA	4974	NM_011294	20024	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.015000	0.477612	
mm_5680.1	chr1	43163727	43163927	-	1	NA	NA	NA	134	NM_010212	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.105000	0.716418	
mm_60105.1	chr7	35396986	35397186	+	1	NA	NA	NA	-7	NM_028120	72140	Mm.133263	NM_028120	ENSMUSG00000023072	Cep89	2610507L03Rik|Ccdc123	centrosomal protein 89	protein-coding	0.040000	0.592040	
mm_68578.1	chr7	115846068	115846268	-	1	NA	NA	NA	-28	NM_001277326	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.005000	0.427861	
mm_75470.1	chr8	47990456	47990656	-	1	NA	NA	NA	-5	NM_133791	52357	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.130000	0.721393	
mm_169510.1	chr14	8408744	8408944	+	1	NA	NA	NA	-30081	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.015000	0.492537	
mm_146466.1	chr18	87004257	87004457	+	1	NA	NA	NA	292292	NM_172633	12405	Mm.70775	NM_172633	ENSMUSG00000024647	Cbln2	6330593N19Rik|A730004O05	cerebellin 2 precursor protein	protein-coding	0.010000	0.363184	
mm_145988.1	chr18	68300247	68300447	+	1	NA	NA	NA	-8	NM_026440	67897	Mm.27544	NM_026440	ENSMUSG00000009535	Rnmt	2610002P10Rik|AI848273|Rg7mt1|mKIAA0398	RNA (guanine-7-) methyltransferase	protein-coding	0.115000	0.636816	
mm_35239.1	chr4	19877169	19877369	-	1	NA	NA	NA	45297	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.005000	0.353234	
mm_62060.1	chr7	92447541	92447741	+	1	NA	NA	NA	-113508	NM_025515	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.015000	0.517413	
mm_92582.1	chr10	80024207	80024407	-	1	NA	NA	NA	4632	NM_027521	70719	Mm.243954	NM_027521	ENSMUSG00000035697	Hmha1	6330406L22Rik|AW539505|Ha-1	histocompatibility (minor) HA-1	protein-coding	0.005000	0.532338	
mm_17675.1	chr2	32259949	32260149	-	1	NA	NA	NA	56	NM_011675	22245	Mm.425076	NM_011675	ENSMUSG00000002550	Uck1	URK1|Umpk	uridine-cytidine kinase 1	protein-coding	0.150000	0.706468	
mm_60838.1	chr7	45721140	45721340	+	1	NA	NA	NA	20	NM_001033170	73813	Mm.322591	NM_001033170	ENSMUSG00000054161	Fam83e	4930403C10Rik	family with sequence similarity 83, member E	protein-coding	0.030000	0.616915	
mm_136248.1	chr16	90937146	90937346	-	1	NA	NA	NA	-2397	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.005000	0.447761	
mm_2042.1	chr1	87264518	87264718	+	1	NA	NA	NA	254	NM_028889	98363	Mm.247951	NM_028889	ENSMUSG00000026255	Efhd1	4931430I01Rik|AI452351|PP3051|mitocalcin	EF hand domain containing 1	protein-coding	0.090000	0.701493	
mm_137139.1	chr17	23604617	23604817	+	1	NA	NA	NA	3891	NM_001289482	332221	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	0.010000	0.542289	
mm_91545.1	chr10	39729742	39729942	-	1	NA	NA	NA	2165	NR_038037	327744	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	0.000000	0.383085	
mm_141144.1	chr17	26504234	26504434	-	1	NA	NA	NA	4138	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.015000	0.447761	
mm_165965.1	chr4	95193209	95193409	+	1	NA	NA	NA	-141087	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.020000	0.532338	
mm_58900.1	chr7	17150270	17150470	+	1	NA	NA	NA	-30	NM_054059	384557	Mm.486145	NM_054059	ENSMUSG00000053228	Ceacam3	EG384557|Psg24|cea12	carcinoembryonic antigen-related cell adhesion molecule 3	protein-coding	0.000000	0.542289	
mm_15285.1	chr2	155276520	155276720	+	1	NA	NA	NA	256	NR_046364	66734	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0.145000	0.761194	
mm_81493.1	chr9	110027610	110027810	+	1	NA	NA	NA	-24311	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.035000	0.437811	
mm_87994.1	chr10	66698143	66698343	+	1	NA	NA	NA	222141	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.040000	0.557214	
mm_123608.1	chr14	68087319	68087519	-	1	NA	NA	NA	3535	NM_010910	18039	Mm.1956	NM_010910	ENSMUSG00000022055	Nefl	AI847934|CMT2E|NF-L|NF68|Nfl	neurofilament, light polypeptide	protein-coding	0.000000	0.472637	
mm_2606.1	chr1	120121189	120121389	+	1	NA	NA	NA	102	NM_001172074	73103	Mm.271602	NM_028439	ENSMUSG00000026388	3110009E18Rik	-	RIKEN cDNA 3110009E18 gene	protein-coding	0.070000	0.562189	
mm_96124.1	chr11	60776828	60777028	+	1	NA	NA	NA	437	NM_009410	21975	Mm.10708	NM_009410	ENSMUSG00000002814	Top3a	-	topoisomerase (DNA) III alpha	protein-coding	0.100000	0.616915	
mm_103435.1	chr11	75906579	75906779	-	1	NA	NA	NA	4380	NM_029548	380714	Mm.425697	NM_029548	ENSMUSG00000020847	Rph3al	Gm1753|Noc2	rabphilin 3A-like (without C2 domains)	protein-coding	0.035000	0.592040	
mm_131745.1	chr16	22119716	22119916	+	1	NA	NA	NA	43483	NM_183029	319765	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.020000	0.572139	
mm_31677.1	chr4	62286331	62286531	+	1	NA	NA	NA	2	NM_025286	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.125000	0.716418	
mm_87450.1	chr10	51482764	51482964	+	1	NA	NA	NA	2252	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.005000	0.407960	
mm_86241.1	chr9	121044792	121044992	-	1	NA	NA	NA	89806	NR_106058	102465661		NR_106058	ENSMUSG00000106193	Mir7090	mmu-mir-7090	microRNA 7090	ncRNA	0.035000	0.552239	
mm_43601.1	chr5	137857095	137857295	+	1	NA	NA	NA	854	NM_133209	170741	Mm.347593	NM_133209	ENSMUSG00000066684	Pilrb1	FDFACT|Fdact|Pilrb	paired immunoglobin-like type 2 receptor beta 1	protein-coding	0.020000	0.512438	
mm_101448.1	chr11	30197901	30198101	-	1	NA	NA	NA	256	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.045000	0.597015	
mm_168345.1	chr11	12129091	12129291	+	1	NA	NA	NA	-91771	NM_010345	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.030000	0.492537	
mm_29878.1	chr3	131019546	131019746	-	1	NA	NA	NA	-90651	NM_010703	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.030000	0.616915	
mm_1217.1	chr1	62727071	62727271	+	1	NA	NA	NA	23854	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.010000	0.462687	
mm_34988.1	chr4	156027373	156027573	+	1	NA	NA	NA	1131	NM_021985	21936	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	0.005000	0.507463	
mm_40155.1	chr5	35575033	35575233	+	1	NA	NA	NA	-63	NM_030208	78890	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	0.090000	0.666667	
mm_54499.1	chr6	35510259	35510459	-	1	NA	NA	NA	29529	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.383085	71(CTATTTTAAAGG,-,0.00)
mm_100840.1	chr11	5707631	5707831	-	1	NA	NA	NA	-32	NM_026080	64660	Mm.7328	NM_026080	ENSMUSG00000020477	Mrps24	3110030K20Rik|AI414579|Rpms24	mitochondrial ribosomal protein S24	protein-coding	0.125000	0.701493	
mm_151264.1	chr19	54045147	54045347	+	1	NA	NA	NA	65	NM_007417	11551	Mm.235195	NM_007417	ENSMUSG00000033717	Adra2a	AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR	adrenergic receptor, alpha 2a	protein-coding	0.110000	0.716418	-20(GGCTATAAAACC,-,0.00)
mm_33864.1	chr4	135929704	135929904	+	1	NA	NA	NA	9078	NM_024243	71665	Mm.439940	NM_024243	ENSMUSG00000028673	Fuca1	0610006A03Rik|9530055J05Rik|Afuc|Fuca	fucosidase, alpha-L- 1, tissue	protein-coding	0.010000	0.442786	
mm_126803.1	chr15	87624203	87624403	+	1	NA	NA	NA	-927	NM_134096	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.155000	0.810945	
mm_41668.1	chr5	99365451	99365651	+	1	NA	NA	NA	-112624	NM_145839	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.000000	0.412935	
mm_99553.1	chr11	103638853	103639053	+	1	NA	NA	NA	17	NR_131143	78629	Mm.398236	NR_131109		1700072I22Rik	-	RIKEN cDNA 1700072I22 gene	ncRNA	0.015000	0.507463	
mm_156387.1	chrX	139800612	139800812	+	1	NA	NA	NA	-96	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.015000	0.497512	
mm_120758.1	chr14	73366264	73366464	+	1	NA	NA	NA	18907	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.030000	0.497512	
mm_96353.1	chr11	66957857	66958057	+	1	NA	NA	NA	63	NR_130646	71576	Mm.340077	NR_130315	ENSMUSG00000085683	9130409J20Rik	-	RIKEN cDNA 9130409J20 gene	ncRNA	0.010000	0.472637	
mm_66262.1	chr7	35729669	35729869	-	1	NA	NA	NA	24685	NM_178704	233115	Mm.257808	NM_178704	ENSMUSG00000043671	Dpy19l3	6030410G08|9330164H19Rik	dpy-19-like 3 (C. elegans)	protein-coding	0.030000	0.462687	
mm_19028.1	chr2	76968418	76968618	-	1	NA	NA	NA	14029	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.040000	0.477612	
mm_94006.1	chr10	127609743	127609943	-	1	NA	NA	NA	11305	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.010000	0.552239	
mm_141302.1	chr17	28080517	28080717	-	1	NA	NA	NA	22	NM_001085555	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.055000	0.686567	
mm_25861.1	chr3	129836638	129836838	+	1	NA	NA	NA	-1	NM_001329552	12630	Mm.117180	NM_007686	ENSMUSG00000058952	Cfi	-	complement component factor i	protein-coding	0.030000	0.447761	
mm_141067.1	chr17	25796873	25797073	-	1	NA	NA	NA	72	NM_133719	70083	Mm.41925	NM_133719	ENSMUSG00000002274	Metrn	1810034B16Rik|Hyrac	meteorin, glial cell differentiation regulator	protein-coding	0.145000	0.756219	
mm_84573.1	chr9	69034193	69034393	-	1	NA	NA	NA	-255548	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.020000	0.522388	
mm_41933.1	chr5	105700755	105700955	+	1	NA	NA	NA	45	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.050000	0.587065	19(GGCTTGAAAAAG,-,0.00)
mm_5939.1	chr1	56637312	56637512	-	1	NA	NA	NA	39	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	0.005000	0.427861	
mm_19884.1	chr2	114050240	114050440	-	1	NA	NA	NA	2535	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.025000	0.527363	
mm_168881.1	chr12	43037542	43037742	+	1	NA	NA	NA	1172426	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.065000	0.651741	
mm_107764.1	chr12	59095556	59095756	+	1	NA	NA	NA	-144	NM_001329047	338320	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.050000	0.512438	
mm_82938.1	chr9	35305152	35305352	-	1	NA	NA	NA	24147	NR_040715	71133	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.020000	0.368159	
mm_4592.1	chr1	178336112	178336312	+	1	NA	NA	NA	1572	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.035000	0.368159	-35(CCGCCTTAAAGC,-,0.00)
mm_173111.1	chrX	158869934	158870134	+	1	NA	NA	NA	-385748	NM_148945	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	0.065000	0.671642	
mm_102784.1	chr11	68400724	68400924	-	1	NA	NA	NA	-13998	NM_008744	18208	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0.005000	0.467662	
mm_29280.1	chr3	107664997	107665197	-	1	NA	NA	NA	31451	NM_145542	229709	Mm.220328	NM_145542	ENSMUSG00000027893	Ahcyl1	1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit	S-adenosylhomocysteine hydrolase-like 1	protein-coding	0.005000	0.378109	
mm_130401.1	chr15	97976033	97976233	-	1	NA	NA	NA	11904	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.030000	0.527363	
mm_88481.1	chr10	77622226	77622426	+	1	NA	NA	NA	5	NM_019803	22213	Mm.458125	NM_019803	ENSMUSG00000009293	Ube2g2	1110003O05Rik|D10Xrf369|UBC7|Ubc7p	ubiquitin-conjugating enzyme E2G 2	protein-coding	0.155000	0.716418	
mm_11609.1	chr2	34406831	34407031	+	1	NA	NA	NA	80	NM_001290626	227743	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	0.130000	0.746269	
mm_26493.1	chr3	145292646	145292846	+	1	NA	NA	NA	274	NM_001317733	71355	Mm.235570	NM_027770	ENSMUSG00000028197	Col24a1	5430404K19Rik	collagen, type XXIV, alpha 1	protein-coding	0.020000	0.592040	
mm_40845.1	chr5	73304525	73304725	+	1	NA	NA	NA	11831	NM_001159888	68095	Mm.247039	NM_023429	ENSMUSG00000029152	Ociad1	6030432N09Rik|AI481327|AW557942|Asrij|B230209J16Rik|BB021357|Emi2|Imi2|OCIA|TPA018	OCIA domain containing 1	protein-coding	0.060000	0.517413	
mm_117801.1	chr13	97206987	97207187	-	1	NA	NA	NA	-8730	NM_010422	15212	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.005000	0.482587	
mm_148563.1	chr19	4756393	4756593	+	1	NA	NA	NA	-32	NM_025717	66704	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	0.145000	0.761194	
mm_82320.1	chr9	8004325	8004525	-	1	NA	NA	NA	171	NM_001171147	22601	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	0.140000	0.766169	
mm_132308.1	chr16	33684418	33684618	+	1	NA	NA	NA	52	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629|OTTMUSG00000027315	heart development protein with EGF-like domains 1	protein-coding	0.145000	0.771144	
mm_108192.1	chr12	76765750	76765950	+	1	NA	NA	NA	277	NM_206534	211151	Mm.80970	NM_206534	ENSMUSG00000090258	Churc1	1700030P15Rik|My015|chch	churchill domain containing 1	protein-coding	0.055000	0.552239	
mm_10470.1	chr2	14331277	14331477	+	1	NA	NA	NA	-57021	NM_001012305	277468	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0.010000	0.388060	
mm_172272.1	chr6	83907065	83907265	-	1	NA	NA	NA	-7188	NM_001166371	18139	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	0.000000	0.522388	
mm_134582.1	chr16	20405739	20405939	-	1	NA	NA	NA	20555	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.020000	0.462687	
mm_21593.1	chr2	164237604	164237804	-	1	NA	NA	NA	637	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.025000	0.477612	
mm_37616.1	chr4	126968118	126968318	-	1	NA	NA	NA	-295	NM_001114399	67785	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0.060000	0.606965	
mm_100872.1	chr11	5915034	5915234	-	1	NA	NA	NA	1	NM_001287386	103988	Mm.220358	NM_010292	ENSMUSG00000041798	Gck	GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2	glucokinase	protein-coding	0.015000	0.577114	
mm_18646.1	chr2	69550815	69551015	-	1	NA	NA	NA	35152	NM_001081088	14725	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	0.020000	0.512438	-60(CCCTCTTTATGG,-,0.00)
mm_77458.1	chr8	121944765	121944965	-	1	NA	NA	NA	47	NM_007608	12352	Mm.116761	NM_007608	ENSMUSG00000025317	Car5a	CAV|Ca5a|Car5	carbonic anhydrase 5a, mitochondrial	protein-coding	0.010000	0.537313	
mm_55189.1	chr6	52191174	52191374	-	1	NA	NA	NA	429	NM_008265	15401	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	0.130000	0.786070	
mm_167838.1	chr9	124440584	124440784	+	1	NA	NA	NA	16897	NR_015516	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.045000	0.626866	
mm_118587.1	chr14	20546059	20546259	+	1	NA	NA	NA	-134	NR_033571	75602	Mm.437061	NR_033571	ENSMUSG00000084925	1810062O18Rik	-	RIKEN cDNA 1810062O18 gene	ncRNA	0.120000	0.751244	
mm_92786.1	chr10	81291413	81291613	-	1	NA	NA	NA	68	NM_001282095	27375	Mm.27984	NM_013769	ENSMUSG00000034917	Tjp3	-	tight junction protein 3	protein-coding	0.030000	0.552239	
mm_58771.1	chr7	15901561	15901761	+	1	NA	NA	NA	15	NM_001145190	546024	Mm.259041	NM_001033638	ENSMUSG00000074365	Crxos	AA606869|AY590891|Crxos1|Egam1	cone-rod homeobox, opposite strand	protein-coding	0.020000	0.477612	
mm_151568.1	chr19	60764096	60764296	+	1	NA	NA	NA	8209	NM_178421	332397	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos homolog 1 (Drosophila)	protein-coding	0.015000	0.363184	41(GTTTATAAAAAG,-,0.00)
mm_160224.1	chr7	101920652	101920852	-	1	NA	NA	NA	22	NM_001162974	69358	Mm.214841	NM_027053	ENSMUSG00000064307	Lrrc51	1700008D07Rik|Lrtomt	leucine rich repeat containing 51	protein-coding	0.015000	0.532338	
mm_25389.1	chr3	107218048	107218248	+	1	NA	NA	NA	3584	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.542289	
mm_128498.1	chr15	51991616	51991816	-	1	NA	NA	NA	44	NM_009009	19357	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0.115000	0.641791	
mm_49591.1	chr6	30645031	30645231	+	1	NA	NA	NA	5913	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.005000	0.522388	
mm_116974.1	chr13	56178834	56179034	-	1	NA	NA	NA	-49	NM_001168615	212937	Mm.116697	NM_145976	ENSMUSG00000049625	Tifab	-	TRAF-interacting protein with forkhead-associated domain, family member B	protein-coding	0.010000	0.547264	
mm_38331.1	chr4	137430421	137430621	-	1	NA	NA	NA	-1	NM_026419	67868	Mm.297477	NM_026419	ENSMUSG00000023433	Cela3b	0910001F22Rik|2310074F01Rik|AI504000|Ela3|Ela3b	chymotrypsin-like elastase family, member 3B	protein-coding	0.015000	0.557214	
mm_155819.1	chrX	100585351	100585551	+	1	NA	NA	NA	9418	NM_020621	57385	Mm.117118	NM_020621	ENSMUSG00000044359	P2ry4	P2Y4|P2Y4R	pyrimidinergic receptor P2Y, G-protein coupled, 4	protein-coding	0.005000	0.313433	
mm_93956.1	chr10	127263257	127263457	-	1	NA	NA	NA	6	NM_008447	16572	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	0.030000	0.547264	
mm_41286.1	chr5	90462663	90462863	+	1	NA	NA	NA	1893	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.020000	0.447761	
mm_131773.1	chr16	22894681	22894881	+	1	NA	NA	NA	-395	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.025000	0.547264	
mm_17622.1	chr2	30982103	30982303	-	1	NA	NA	NA	-76	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.095000	0.676617	
mm_150213.1	chr19	32952545	32952745	+	1	NA	NA	NA	195068	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.010000	0.462687	
mm_44088.1	chr5	149229128	149229328	+	1	NA	NA	NA	-35776	NM_001308462	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.110000	0.746269	
mm_1212.1	chr1	62726798	62726998	+	1	NA	NA	NA	23581	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.005000	0.432836	
mm_51658.1	chr6	86194987	86195187	+	1	NA	NA	NA	-140	NM_031199	21802	Mm.137222	NM_031199	ENSMUSG00000029999	Tgfa	wa-1|wa1	transforming growth factor alpha	protein-coding	0.065000	0.671642	
mm_160103.1	chr7	20008124	20008324	+	1	NA	NA	NA	201	NM_194058	243874	Mm.277114	NM_194058	ENSMUSG00000060508	Nlrp9b	Nalp-delta|Nalp9b|Nlrp9	NLR family, pyrin domain containing 9B	protein-coding	0.000000	0.353234	
mm_136570.1	chr17	3453121	3453321	+	1	NA	NA	NA	-29094	NM_001286758	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.025000	0.462687	
mm_79067.1	chr9	46233222	46233422	+	1	NA	NA	NA	1977	NM_001289833	11814	Mm.390161	NM_023114	ENSMUSG00000032081	Apoc3	apo-CIII|apoC-III	apolipoprotein C-III	protein-coding	0.010000	0.512438	
mm_63737.1	chr7	130898113	130898313	+	1	NA	NA	NA	-10055	NR_106028	102466219		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0.005000	0.278607	
mm_75618.1	chr8	64592785	64592985	-	1	NA	NA	NA	-78444	NR_030491	735270		NR_030491	ENSMUSG00000076042	Mir710	Mirn710|mmu-mir-710	microRNA 710	ncRNA	0.030000	0.383085	
mm_165181.1	chr2	29772102	29772302	-	1	NA	NA	NA	10674	NM_001177392	433416	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	OTTMUSG00000012686	predicted gene 13547	protein-coding	0.010000	0.462687	
mm_88501.1	chr10	77838260	77838460	+	1	NA	NA	NA	2413	NM_001024709	544710	Mm.441890	NM_001024709		Krtap10-10	EG544710	keratin associated protein 10-10	protein-coding	0.010000	0.343284	
mm_74621.1	chr8	13104727	13104927	-	1	NA	NA	NA	516	NM_178708	234069	Mm.103427	NM_178708	ENSMUSG00000038542	Pcid2	A730042J05Rik	PCI domain containing 2	protein-coding	0.090000	0.636816	
mm_107309.1	chr12	31073922	31074122	+	1	NA	NA	NA	54	NM_027828	104943	Mm.248938	NM_027828	ENSMUSG00000036136	Fam110c	9030611O19Rik|AU019489	family with sequence similarity 110, member C	protein-coding	0.080000	0.651741	
mm_113871.1	chr13	48662815	48663015	+	1	NA	NA	NA	-121	NM_007526	12022	Mm.42241	NM_007526	ENSMUSG00000021381	Barx1	-	BarH-like homeobox 1	protein-coding	0.170000	0.870647	
mm_101942.1	chr11	50207803	50208003	-	1	NA	NA	NA	2917	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.020000	0.482587	72(CTACATTAAAGG,-,0.00)
mm_40.1	chr1	6482671	6482871	+	1	NA	NA	NA	-4460	NM_001244693	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.005000	0.363184	63(TCTTTTATGCAC,+,0.00)
mm_31702.1	chr4	62559718	62559918	+	1	NA	NA	NA	-29	NM_019492	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.010000	0.487562	
mm_121743.1	chr14	18709561	18709761	-	1	NA	NA	NA	183966	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0.010000	0.487562	
mm_61038.1	chr7	49638933	49639133	+	1	NA	NA	NA	-2198	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.035000	0.532338	
mm_50598.1	chr6	49111143	49111343	+	1	NA	NA	NA	37448	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.005000	0.437811	
mm_138724.1	chr17	36898121	36898321	+	1	NA	NA	NA	91	NM_146077	224762	Mm.213417	NM_146077	ENSMUSG00000058063	Trim31	BC026666|HCG1|HCGI|RNF	tripartite motif-containing 31	protein-coding	0.005000	0.447761	
mm_74337.1	chr8	127093473	127093673	+	1	NA	NA	NA	29517	NM_001309391	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.000000	0.412935	
mm_19193.1	chr2	84433004	84433204	-	1	NA	NA	NA	-7838	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.020000	0.303483	
mm_70745.1	chr8	19163815	19164015	+	1	NA	NA	NA	6028	NM_153115	78128	Mm.229357	NM_153115	ENSMUSG00000079842	Spag11a	9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11	sperm associated antigen 11A	protein-coding	0.020000	0.562189	
mm_124582.1	chr14	124677000	124677200	-	1	NA	NA	NA	27	NM_207667	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.015000	0.412935	
mm_109018.1	chr12	103451012	103451212	+	1	NA	NA	NA	6111	NM_145449	217845	Mm.298416	NM_145449	ENSMUSG00000021208	Ifi27l2b	1810023F06Rik|ISG12(b2)	interferon, alpha-inducible protein 27 like 2B	protein-coding	0.005000	0.502488	
mm_136350.1	chr16	92694978	92695178	-	1	NA	NA	NA	2251	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.015000	0.427861	
mm_137122.1	chr17	22674262	22674462	+	1	NA	NA	NA	73214	NM_001104575	628185	Mm.390947	NM_001104575	ENSMUSG00000094921	Vmn2r112	EG628185|V2rp1	vomeronasal 2, receptor 112	protein-coding	0.030000	0.582090	
mm_89733.1	chr10	98994799	98994999	+	1	NA	NA	NA	79747	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.010000	0.412935	-28(TGCTTTAAAAGT,-,0.00),-27(GCTTTAAAAGTG,+,0.00)
mm_122143.1	chr14	31184892	31185092	-	1	NA	NA	NA	-16351	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.035000	0.636816	
mm_101271.1	chr11	21370478	21370678	-	1	NA	NA	NA	51	NM_139297	216558	Mm.28877	NM_139297	ENSMUSG00000001891	Ugp2	UDPGP|UGPase	UDP-glucose pyrophosphorylase 2	protein-coding	0.115000	0.691542	
mm_159405.1	chr3	98563862	98564062	-	1	NA	NA	NA	-19	NM_001111336	15495	Mm.14309	NM_008294	ENSMUSG00000095143	Hsd3b4	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	protein-coding	0.010000	0.432836	
mm_141371.1	chr17	29007767	29007967	-	1	NA	NA	NA	70	NM_134115	106504	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0.125000	0.711443	
mm_26356.1	chr3	142549222	142549422	+	1	NA	NA	NA	-10730	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.000000	0.293532	
mm_41565.1	chr5	93150040	93150240	+	1	NA	NA	NA	56355	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.025000	0.452736	
mm_51699.1	chr6	86607742	86607942	+	1	NA	NA	NA	-20332	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.000000	0.577114	
mm_110196.1	chr12	27340349	27340549	-	1	NA	NA	NA	2269	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.005000	0.333333	
mm_22890.1	chr3	30732250	30732450	+	1	NA	NA	NA	-13943	NM_029489	75953	Mm.308084	NM_029489	ENSMUSG00000051860	Samd7	4930597A01Rik	sterile alpha motif domain containing 7	protein-coding	0.015000	0.373134	-98(CCTTTAAAACTA,+,0.00)
mm_13322.1	chr2	102777377	102777577	+	1	NA	NA	NA	71039	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.030000	0.452736	
mm_58722.1	chr7	13024307	13024507	+	1	NA	NA	NA	255	NM_011588	21849	Mm.15701	NM_011588	ENSMUSG00000005566	Trim28	AA408787|KAP-1|KRIP-1|MommeD9|Tif1b|Tif1beta	tripartite motif-containing 28	protein-coding	0.170000	0.726368	
mm_162923.1	chr10	121034130	121034330	+	1	NA	NA	NA	226	NM_011915	24117	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0.065000	0.626866	
mm_100633.1	chr11	121717080	121717280	+	1	NA	NA	NA	14753	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.020000	0.437811	
mm_161923.1	chr18	75114530	75114730	+	1	NA	NA	NA	95858	NM_027727	69190	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	0.000000	0.303483	
mm_150521.1	chr19	39036441	39036641	+	1	NA	NA	NA	-24465	NM_028191	72303	Mm.482578	NM_028191	ENSMUSG00000067231	Cyp2c65	2210009K14Rik	cytochrome P450, family 2, subfamily c, polypeptide 65	protein-coding	0.005000	0.378109	
mm_141999.1	chr17	35196087	35196287	-	1	NA	NA	NA	1215	NR_105939	102465588		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	0.080000	0.601990	
mm_141916.1	chr17	34999225	34999425	-	1	NA	NA	NA	1421	NM_033075	110956	Mm.22506	NM_033075		D17H6S56E-5	G7e	DNA segment, Chr 17, human D6S56E 5	protein-coding	0.020000	0.472637	
mm_69737.1	chr7	140900291	140900491	-	1	NA	NA	NA	55	NM_007751	12869	Mm.3841	NM_007751	ENSMUSG00000025488	Cox8b	Cox8h|CoxVIII-H	cytochrome c oxidase subunit VIIIb	protein-coding	0.035000	0.587065	-54(AGCTATAAAAAG,-,0.00)
mm_84161.1	chr9	59544500	59544700	-	1	NA	NA	NA	5060	NM_010421	15211	Mm.2284	NM_010421	ENSMUSG00000025232	Hexa	Hex-1	hexosaminidase A	protein-coding	0.010000	0.527363	
mm_84539.1	chr9	67266825	67267025	-	1	NA	NA	NA	-30199	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	0.010000	0.562189	
mm_129518.1	chr15	79108902	79109102	-	1	NA	NA	NA	19	NM_177461	27008	Mm.196480	NM_177461	ENSMUSG00000033039	Micall1	AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668	microtubule associated monooxygenase, calponin and LIM domain containing -like 1	protein-coding	0.155000	0.810945	
mm_154244.1	chr19	60766336	60766536	-	1	NA	NA	NA	7949	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.015000	0.532338	
mm_53904.1	chr6	3498207	3498407	-	1	NA	NA	NA	-86	NM_001167751	73288	Mm.45539	NM_024260	ENSMUSG00000001376	Vps50	1700034M03Rik|8430415E05Rik|BLM|C87205|Ccdc132|mKIAA1861	VPS50 EARP/GARPII complex subunit	protein-coding	0.035000	0.527363	
mm_22472.1	chr3	5218454	5218654	+	1	NA	NA	NA	0	NM_030708	80892	Mm.41522	NM_030708	ENSMUSG00000025255	Zfhx4	A930021B15|C130041O22Rik|Zfh-4|Zfh4	zinc finger homeodomain 4	protein-coding	0.025000	0.437811	
mm_58973.1	chr7	19024158	19024358	+	1	NA	NA	NA	-119	NM_026605	68188	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	0.130000	0.701493	
mm_41023.1	chr5	81571480	81571680	+	1	NA	NA	NA	549987	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.000000	0.268657	
mm_61652.1	chr7	80422892	80423092	+	1	NA	NA	NA	-17556	NM_001081454	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.050000	0.482587	44(TACTTTTAAAAG,-,0.00),46(CTTTTAAAAGAT,+,0.00)
mm_66219.1	chr7	34546691	34546891	-	1	NA	NA	NA	106050	NM_146188	233107	Mm.486198	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	0.035000	0.567164	
mm_167629.1	chr9	61808106	61808306	+	1	NA	NA	NA	106304	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.040000	0.572139	
mm_172110.1	chr6	3200805	3201005	+	1	NA	NA	NA	-87614	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.060000	0.547264	
mm_152649.1	chr19	12540723	12540923	-	1	NA	NA	NA	-32687	NM_001346545	107373	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	0.010000	0.482587	
mm_112760.1	chr13	19347446	19347646	+	1	NA	NA	NA	48267	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.393035	
mm_15351.1	chr2	156196641	156196841	+	1	NA	NA	NA	94	NM_172674	228829	Mm.427078	NM_172674	ENSMUSG00000038116	Phf20	6820402O20Rik	PHD finger protein 20	protein-coding	0.125000	0.721393	
mm_122471.1	chr14	45581936	45582136	-	1	NA	NA	NA	38326	NR_045809	67651	Mm.55930	NR_045809		4930527F14Rik	-	RIKEN cDNA 4930527F14 gene	ncRNA	0.000000	0.248756	26(TTTTATATAGTG,+,0.00)
mm_144561.1	chr18	31759831	31760031	+	1	NA	NA	NA	107	NM_153515	225339	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0.085000	0.636816	
mm_131074.1	chr16	4707028	4707228	+	1	NA	NA	NA	12228	NM_001290763	67824	Mm.28451	NM_026393	ENSMUSG00000063445	Nmral1	1110025F24Rik|AI256624	NmrA-like family domain containing 1	protein-coding	0.010000	0.522388	
mm_171710.1	chr4	78772876	78773076	-	1	NA	NA	NA	178929	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA	0.040000	0.547264	
mm_27928.1	chr3	79564815	79565015	-	1	NA	NA	NA	2764	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.020000	0.437811	-33(CTATATATAGGG,+,0.00)
mm_113236.1	chr13	27259388	27259588	+	1	NA	NA	NA	-1	NM_025896	67000	Mm.69279	NM_025896	ENSMUSG00000038883	Prl3a1	1600016E11Rik|Ghd9|PLP-H|PLP-I|Plpi|Prlpi	prolactin family 3, subfamily a, member 1	protein-coding	0.005000	0.358209	
mm_146515.1	chr18	3507714	3507914	-	1	NA	NA	NA	-143	NM_026505	68010	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	0.105000	0.736318	
mm_16522.1	chr2	181511128	181511328	+	1	NA	NA	NA	-9257	NM_016775	13002	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0.005000	0.388060	
mm_138004.1	chr17	33817751	33817951	+	1	NA	NA	NA	6647	NM_016844	54127	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	0.130000	0.706468	
mm_69574.1	chr7	135700860	135701060	-	1	NA	NA	NA	15419	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.025000	0.462687	
mm_120745.1	chr14	73234828	73235028	+	1	NA	NA	NA	-2963	NM_175116	67168	Mm.390681	NM_175116	ENSMUSG00000033446	Lpar6	2610302I02Rik|P2ry5|P2y5	lysophosphatidic acid receptor 6	protein-coding	0.005000	0.427861	
mm_125588.1	chr15	59619996	59620196	+	1	NA	NA	NA	-28558	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.015000	0.487562	
mm_85950.1	chr9	112113858	112114058	-	1	NA	NA	NA	4753	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.005000	0.467662	
mm_117976.1	chr13	100078605	100078805	-	1	NA	NA	NA	25365	NM_001081061	544971	Mm.288546	NM_001081061	ENSMUSG00000049658	Bdp1	AI662220|AW049390|AW456745|B130055N23Rik|G630013P12Rik|TAF3B1|TFC5|TFIIIB150|TFIIIB90|Tfnr|mKIAA1241	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	protein-coding	0.015000	0.353234	
mm_108227.1	chr12	77238670	77238870	+	1	NA	NA	NA	31	NR_045554	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.185000	0.805970	
mm_79804.1	chr9	64175324	64175524	+	1	NA	NA	NA	-8	NR_028548	100217453		NR_028548	ENSMUSG00000094411	Snord16a	MBII-98	small nucleolar RNA, C/D box 16A	snoRNA	0.020000	0.412935	
mm_116917.1	chr13	55513335	55513535	-	1	NA	NA	NA	11	NM_026131	67399	Mm.275648	NM_026131	ENSMUSG00000021493	Pdlim7	LMP	PDZ and LIM domain 7	protein-coding	0.120000	0.751244	
mm_111445.1	chr12	98249293	98249493	-	1	NA	NA	NA	10066	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.015000	0.323383	
mm_100619.1	chr11	121592468	121592668	+	1	NA	NA	NA	-73226	NM_178763	319530	Mm.11395	NM_178763	ENSMUSG00000039238	Zfp750	A030007D23Rik|Znf750	zinc finger protein 750	protein-coding	0.005000	0.457711	
mm_91020.1	chr10	17724260	17724460	-	1	NA	NA	NA	1132	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.035000	0.616915	
mm_141827.1	chr17	34627079	34627279	-	1	NA	NA	NA	-31	NM_019441	54397	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	0.025000	0.552239	
mm_117402.1	chr13	73700625	73700825	-	1	NA	NA	NA	-30	NM_028878	74338	Mm.271635	NM_028878	ENSMUSG00000021565	Slc6a19	4632401C08Rik|B<0>AT1	solute carrier family 6 (neurotransmitter transporter), member 19	protein-coding	0.045000	0.611940	-5(TTCTCTATAAAG,-,0.00),-3(CTCTATAAAGAG,+,0.00),-3(CTCTATAAAGAG,-,0.00)
mm_67663.1	chr7	86775724	86775924	-	1	NA	NA	NA	40	NM_016770	53320	Mm.269137	NM_016770	ENSMUSG00000001773	Folh1	GCP2|mopsm	folate hydrolase 1	protein-coding	0.030000	0.497512	
mm_32768.1	chr4	116693736	116693936	+	1	NA	NA	NA	-7814	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.025000	0.457711	
mm_41022.1	chr5	81556255	81556455	+	1	NA	NA	NA	534762	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.005000	0.462687	
mm_53704.1	chr6	142967685	142967885	+	1	NA	NA	NA	-3333	NM_011374	20449	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0.005000	0.407960	
mm_169040.1	chr13	14034157	14034357	+	1	NA	NA	NA	5381	NR_130788	70430	Mm.260209	NM_178337	ENSMUSG00000039233	Tbce	2610206D02Rik|C530005D02Rik|pmn	tubulin-specific chaperone E	protein-coding	0.000000	0.457711	
mm_153237.1	chr19	36112220	36112420	-	1	NA	NA	NA	7524	NM_013468	107765	Mm.10279	NM_013468	ENSMUSG00000024803	Ankrd1	Alrp|CARP|Crap|MARP1	ankyrin repeat domain 1 (cardiac muscle)	protein-coding	0.035000	0.477612	-95(GCTCTTAAACCG,+,0.00),-19(CTTTTTAAAAGG,+,0.00),-19(CTTTTTAAAAGG,-,0.00),-18(TTTTTAAAAGGC,+,0.00)
mm_78982.1	chr9	45389799	45389999	+	1	NA	NA	NA	-9810	NR_028499	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.020000	0.557214	
mm_70858.1	chr8	24412998	24413198	+	1	NA	NA	NA	25848	NM_026931	69068	Mm.25775	NM_026931	ENSMUSG00000056313	1810011O10Rik	1110065B09Rik|AW121743|AW321058	RIKEN cDNA 1810011O10 gene	protein-coding	0.005000	0.502488	
mm_120184.1	chr14	61380213	61380413	+	1	NA	NA	NA	-19868	NM_026598	68177	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0.005000	0.492537	
mm_29412.1	chr3	108972150	108972350	-	1	NA	NA	NA	31693	NM_001078646	66715	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0.000000	0.308458	
mm_126868.1	chr15	89355669	89355869	+	1	NA	NA	NA	50	NM_001271601	52683	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	0.085000	0.616915	
mm_153482.1	chr19	41276858	41277058	-	1	NA	NA	NA	-12954	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.005000	0.462687	
mm_7091.1	chr1	88654612	88654812	-	1	NA	NA	NA	47479	NM_177305	320982	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.000000	0.502488	-34(TGGTTTAAAAGG,-,0.00)
mm_60293.1	chr7	44012581	44012781	+	1	NA	NA	NA	3	NM_010644	16618	Mm.439663	NM_010644	ENSMUSG00000053719	Klk1b26	Egfbp2|Klk26|PRECE-2|mGK-26|mGK26	kallikrein 1-related petidase b26	protein-coding	0.000000	0.542289	
mm_54467.1	chr6	34907806	34908006	-	1	NA	NA	NA	2925	NM_001013366	101240	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.030000	0.527363	
mm_127118.1	chr15	98004650	98004850	+	1	NA	NA	NA	-26	NM_001113515	12824	Mm.2423	NM_031163	ENSMUSG00000022483	Col2a1	Col2|Col2a|Col2a-1|Del1|Dmm|Lpk|Rgsc856	collagen, type II, alpha 1	protein-coding	0.080000	0.721393	
mm_150272.1	chr19	34243319	34243519	+	1	NA	NA	NA	11954	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.020000	0.517413	
mm_3552.1	chr1	150417381	150417581	+	1	NA	NA	NA	-24426	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.005000	0.358209	
mm_21596.1	chr2	164237664	164237864	-	1	NA	NA	NA	577	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.040000	0.507463	
mm_153863.1	chr19	46619865	46620065	-	1	NA	NA	NA	-3436	NM_001177813	226178	Mm.329895	NM_146099	ENSMUSG00000047731	Wbp1l	D19Wsu162e|Opal1	WW domain binding protein 1 like	protein-coding	0.010000	0.452736	50(GGCTTTAAGGGG,-,0.00),51(GCTTTAAGGGGT,+,0.00)
mm_52606.1	chr6	117173531	117173731	+	1	NA	NA	NA	5096	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.025000	0.562189	
mm_24202.1	chr3	88616189	88616389	+	1	NA	NA	NA	82	NM_001198911	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.015000	0.567164	
mm_15884.1	chr2	164839488	164839688	+	1	NA	NA	NA	5815	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.010000	0.517413	
mm_143225.1	chr17	63311193	63311393	-	1	NA	NA	NA	1680	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.005000	0.333333	
mm_123756.1	chr14	70203331	70203531	-	1	NA	NA	NA	1192	NM_001271408	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.015000	0.601990	
mm_58765.1	chr7	15881584	15881784	+	1	NA	NA	NA	-933	NR_038092	546024	Mm.259041	NM_001033638	ENSMUSG00000074365	Crxos	AA606869|AY590891|Crxos1|Egam1	cone-rod homeobox, opposite strand	protein-coding	0.015000	0.512438	-89(GGCCAGAAAGGG,-,0.00)
mm_58689.1	chr7	12881085	12881285	+	1	NA	NA	NA	7	NM_153802	243833	Mm.293823	NM_153802	ENSMUSG00000060397	Zfp128	9630016P15Rik|Znf8|mZnf8	zinc finger protein 128	protein-coding	0.065000	0.601990	
mm_130398.1	chr15	97975935	97976135	-	1	NA	NA	NA	11806	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.025000	0.522388	
mm_112083.1	chr12	112673922	112674122	-	1	NA	NA	NA	254	NM_001165894	11651	Mm.6645	NM_009652	ENSMUSG00000001729	Akt1	Akt|LTR-akt|PKB|PKB/Akt|PKBalpha|Rac	thymoma viral proto-oncogene 1	protein-coding	0.200000	0.840796	
mm_9633.1	chr1	176814078	176814278	-	1	NA	NA	NA	-482	NM_029756	76816	Mm.171399	NM_029756	ENSMUSG00000026504	Sdccag8	2700048G21Rik|5730470G24Rik|Cccap	serologically defined colon cancer antigen 8	protein-coding	0.075000	0.676617	
mm_88311.1	chr10	75429952	75430152	+	1	NA	NA	NA	-19458	NR_045841	71125	Mm.399516	NR_045841		4933407G14Rik	-	RIKEN cDNA 4933407G14 gene	ncRNA	0.020000	0.522388	
mm_86376.1	chr9	123839739	123839939	-	1	NA	NA	NA	11822	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.005000	0.398010	-35(TGCTATAAATGG,-,0.00)
mm_43736.1	chr5	139800915	139801115	+	1	NA	NA	NA	9479	NM_010757	17135	Mm.157313	NM_010757	ENSMUSG00000018143	Mafk	AW061068|NF-E2|Nfe2u	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)	protein-coding	0.010000	0.547264	-100(CCCTTTCTGGGC,+,0.00),-44(GCTCTTAGAGCC,+,0.00)
mm_46623.1	chr5	108405428	108405628	-	1	NA	NA	NA	17155	NM_008806	18587	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0.000000	0.517413	
mm_51900.1	chr6	90662719	90662919	+	1	NA	NA	NA	43573	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.025000	0.661692	
mm_76571.1	chr8	88664185	88664385	-	1	NA	NA	NA	16938	NM_145857	257632	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0.055000	0.572139	
mm_151567.1	chr19	60756280	60756480	+	1	NA	NA	NA	393	NM_178421	332397	Mm.186390	NM_178421	ENSMUSG00000072437	Nanos1	NOS-1	nanos homolog 1 (Drosophila)	protein-coding	0.145000	0.776119	
mm_57601.1	chr6	127796215	127796415	-	1	NA	NA	NA	-8172	NR_106092	102466996		NR_106092	ENSMUSG00000104804	Mir7233	mmu-mir-7233	microRNA 7233	ncRNA	0.010000	0.487562	
mm_84296.1	chr9	63377722	63377922	-	1	NA	NA	NA	30	NM_011840	23938	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	0.135000	0.736318	
mm_28697.1	chr3	95539115	95539315	-	1	NA	NA	NA	12429	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.030000	0.507463	-42(ATGTTTATAAGG,-,0.00),-40(GTTTATAAGGTC,+,0.00),-28(CTATCTATAAGG,-,0.00)
mm_41656.1	chr5	98854350	98854550	+	1	NA	NA	NA	35	NM_001310677	110075	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0.045000	0.636816	
mm_29470.1	chr3	115641421	115641621	-	1	NA	NA	NA	73534	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.010000	0.487562	
mm_109985.1	chr12	13455908	13456108	-	1	NA	NA	NA	171638	NR_136761	102639399	Mm.122052	NR_136761		Gm35725	-	predicted gene, 35725	ncRNA	0.035000	0.557214	
mm_40625.1	chr5	64812269	64812469	+	1	NA	NA	NA	8846	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.040000	0.517413	
mm_133177.1	chr16	72358371	72358571	+	1	NA	NA	NA	-124144	NR_131115	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0.005000	0.432836	
mm_173190.1	chrX	61345331	61345531	-	1	NA	NA	NA	154138	NR_033502	320247	Mm.447372	NR_033502		C030023E24Rik	-	RIKEN cDNA C030023E24 gene	ncRNA	0.040000	0.606965	
mm_112576.1	chr13	13634852	13635052	+	1	NA	NA	NA	44543	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.015000	0.467662	
mm_90210.1	chr10	120729592	120729792	+	1	NA	NA	NA	-36040	NR_038000	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.020000	0.427861	
mm_127250.1	chr15	99670504	99670704	+	1	NA	NA	NA	-114	NM_009597	11419	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	0.140000	0.771144	
mm_68491.1	chr7	111074728	111074928	-	1	NA	NA	NA	8202	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.015000	0.457711	
mm_56944.1	chr6	119961159	119961359	-	1	NA	NA	NA	58561	NM_001166381	19365	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.000000	0.333333	
mm_44345.1	chr5	17782669	17782869	-	1	NA	NA	NA	53127	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.348259	
mm_37082.1	chr4	116371676	116371876	-	1	NA	NA	NA	92405	NM_001042743	17776	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0.000000	0.502488	
mm_138761.1	chr17	37050844	37051044	+	1	NA	NA	NA	4978	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.075000	0.716418	
mm_23626.1	chr3	65974790	65974990	+	1	NA	NA	NA	-16665	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.095000	0.666667	
mm_107885.1	chr12	70452977	70453177	+	1	NA	NA	NA	-77	NM_028339	72736	Mm.204670	NM_028339	ENSMUSG00000021072	Tmx1	2810425A04Rik|AI465319|Txndc1	thioredoxin-related transmembrane protein 1	protein-coding	0.100000	0.711443	
mm_148821.1	chr19	6299637	6299837	+	1	NA	NA	NA	-6720	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.015000	0.592040	
mm_55446.1	chr6	67237808	67238008	-	1	NA	NA	NA	-29071	NM_001113564	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.025000	0.502488	
mm_35084.1	chr4	7455188	7455388	-	1	NA	NA	NA	-105400	NR_040645	71510	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0.030000	0.482587	58(CCTTATCAAGAC,+,0.00)
mm_81924.1	chr9	120174795	120174995	+	1	NA	NA	NA	25153	NM_001039364	17433	Mm.486167	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.030000	0.567164	
mm_63295.1	chr7	126807668	126807868	+	1	NA	NA	NA	-7321	NM_001177308	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.005000	0.577114	
mm_129971.1	chr15	85809139	85809339	-	1	NA	NA	NA	2458	NM_001164626	72355	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	0.030000	0.577114	
mm_47209.1	chr5	121008909	121009109	-	1	NA	NA	NA	-525	NM_001302345	19894	Mm.181166	NM_011286	ENSMUSG00000029608	Rph3a	2900002P20Rik|AU022689|AW108370	rabphilin 3A	protein-coding	0.025000	0.527363	
mm_37244.1	chr4	118144386	118144586	-	1	NA	NA	NA	-9540	NM_001161774	20441	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.015000	0.472637	-35(GGCTATAAAAAC,-,0.00)
mm_94262.1	chr11	3514778	3514978	+	1	NA	NA	NA	194	NM_053267	114679	Mm.34046	NM_053267	ENSMUSG00000075702	Selenom	1500040L08Rik|A230103K18|Selm|Sepm	selenoprotein M	protein-coding	0.075000	0.656716	
mm_166538.1	chr6	30903479	30903679	+	1	NA	NA	NA	-6785	NM_017478	54160	Mm.39896	NM_017478	ENSMUSG00000025607	Copg2	AW227625|gamma-2-COP	coatomer protein complex, subunit gamma 2	protein-coding	0.005000	0.398010	-17(GACTCTTAAAAG,-,0.00),-15(CTCTTAAAAGTC,+,0.00)
mm_49306.1	chr6	17822876	17823076	+	1	NA	NA	NA	73806	NM_022332	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.000000	0.323383	
mm_128496.1	chr15	51967752	51967952	-	1	NA	NA	NA	23908	NM_009009	19357	Mm.182628	NM_009009	ENSMUSG00000022314	Rad21	SCC1|mKIAA0078	RAD21 cohesin complex component	protein-coding	0.020000	0.497512	
mm_166035.1	chr4	129008001	129008201	+	1	NA	NA	NA	14877	NM_001033966	11637	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.060000	0.562189	
mm_129461.1	chr15	78573085	78573285	-	1	NA	NA	NA	-402	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.010000	0.572139	
mm_163302.1	chr11	120660576	120660776	-	1	NA	NA	NA	161	NM_175263	77583	Mm.32839	NM_175263	ENSMUSG00000042988	Notum	5730593N15Rik	notum pectinacetylesterase homolog (Drosophila)	protein-coding	0.120000	0.716418	
mm_165845.1	chr4	6806900	6807100	-	1	NA	NA	NA	183723	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.000000	0.402985	13(GCCCATATAAGT,-,0.00)
mm_45609.1	chr5	75569815	75570015	-	1	NA	NA	NA	-5072	NM_001122733	16590	Mm.247073	NM_021099	ENSMUSG00000005672	Kit	Bs|CD117|Fdc|Gsfsco1|Gsfsco5|Gsfsow3|SCO1|SCO5|SOW3|Ssm|Tr-kit|W|c-KIT	KIT proto-oncogene receptor tyrosine kinase	protein-coding	0.025000	0.477612	-7(GCTTTTAGACAC,+,0.00),13(GAGTTTAAAAGA,-,0.00)
mm_154584.1	chrX	7572611	7572811	+	1	NA	NA	NA	-889	NR_029473	78185	Mm.160055	NR_029473	ENSMUSG00000039545	Ppp1r3fos	4930524L23Rik	protein phosphatase 1, regulatory subunit 3F, opposite strand	ncRNA	0.020000	0.522388	
mm_68245.1	chr7	105481859	105482059	-	1	NA	NA	NA	238	NM_028444	109042	Mm.3124	NM_028444	ENSMUSG00000037060	Prkcdbp	3110015B12Rik|6330514M23Rik|SRBC	protein kinase C, delta binding protein	protein-coding	0.105000	0.726368	
mm_166973.1	chr7	44669180	44669380	-	1	NA	NA	NA	1563	NM_001271540	71960	Mm.158289	NM_028021	ENSMUSG00000030739	Myh14	2400004E04Rik|II-C|NHMCII|NMHC II-C	myosin, heavy polypeptide 14	protein-coding	0.070000	0.671642	
mm_22580.1	chr3	10366918	10367118	+	1	NA	NA	NA	45	NM_025519	66371	Mm.366147	NM_025519	ENSMUSG00000027536	Chmp4c	2010012P02Rik|2210015K02Rik|2310010I16Rik|Shax3|Snf7-3	charged multivesicular body protein 4C	protein-coding	0.060000	0.631841	31(GTTCTTTAAAGG,-,0.00),32(TTCTTTAAAGGG,-,0.00),33(TCTTTAAAGGGA,+,0.00)
mm_118331.1	chr13	113769797	113769997	-	1	NA	NA	NA	-24611	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.010000	0.383085	
mm_69571.1	chr7	135700789	135700989	-	1	NA	NA	NA	15490	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.015000	0.447761	
mm_54545.1	chr6	36809914	36810114	-	1	NA	NA	NA	1347	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.035000	0.577114	
mm_74706.1	chr8	17090999	17091199	-	1	NA	NA	NA	444286	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.010000	0.268657	
mm_67851.1	chr7	98694103	98694303	-	1	NA	NA	NA	8725	NR_144495	100040769	Mm.126401	NR_144495		Gm15506	OTTMUSG00000023003	predicted gene 15506	ncRNA	0.015000	0.492537	
mm_22786.1	chr3	22077452	22077652	+	1	NA	NA	NA	900	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.030000	0.393035	
mm_132182.1	chr16	32400728	32400928	+	1	NA	NA	NA	322	NM_001160402	277203	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0.035000	0.577114	
mm_155748.1	chrX	96167058	96167258	+	1	NA	NA	NA	71113	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.005000	0.388060	
mm_107732.1	chr12	57512935	57513135	+	1	NA	NA	NA	33086	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.010000	0.323383	-33(ACCTATAAATGC,-,0.00)
mm_146549.1	chr18	6216815	6217015	-	1	NA	NA	NA	24609	NM_008448	16573	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.005000	0.368159	
mm_138576.1	chr17	35428009	35428209	+	1	NA	NA	NA	3232	NM_207648	110557	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	0.000000	0.592040	
mm_132199.1	chr16	32550152	32550352	+	1	NA	NA	NA	53971	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.015000	0.512438	
mm_108685.1	chr12	86834055	86834255	+	1	NA	NA	NA	50659	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.005000	0.343284	77(TTTTTTAAGGGG,+,0.00)
mm_159812.1	chr5	120648699	120648899	+	1	NA	NA	NA	-13	NM_013832	19415	Mm.41209	NM_013832	ENSMUSG00000029602	Rasal1	MRASAL	RAS protein activator like 1 (GAP1 like)	protein-coding	0.100000	0.696517	
mm_99468.1	chr11	102435788	102435988	+	1	NA	NA	NA	5566	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.020000	0.606965	
mm_153197.1	chr19	34526185	34526385	-	1	NA	NA	NA	1189	NM_001111100	16889	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.015000	0.452736	27(GCTTTTATGTTC,+,0.00)
mm_137578.1	chr17	27909273	27909473	+	1	NA	NA	NA	67	NM_181413	224650	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.105000	0.721393	
mm_143672.1	chr17	79973180	79973380	-	1	NA	NA	NA	-77157	NM_001286647	56298	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.015000	0.517413	
mm_5477.1	chr1	36683035	36683235	-	1	NA	NA	NA	48	NM_001126046	381337	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0.095000	0.711443	
mm_39648.1	chr5	24645404	24645604	+	1	NA	NA	NA	51	NR_003953	72252	Mm.87446	NR_003953	ENSMUSG00000038165	1700022A21Rik	-	glycerol-3-phosphate dehydrogenase 1-like pseudogene	pseudo	0.005000	0.502488	-34(GACTTTAAAGGG,-,0.00)
mm_114329.1	chr13	60640904	60641104	+	1	NA	NA	NA	38793	NM_134062	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.015000	0.293532	
mm_51962.1	chr6	91757952	91758152	+	1	NA	NA	NA	49341	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.030000	0.592040	
mm_914.1	chr1	55027499	55027699	+	1	NA	NA	NA	-121	NM_031179	81898	Mm.279736	NM_031179	ENSMUSG00000025982	Sf3b1	155kDa|2810001M05Rik|AA409119|Prp10|SAP155|SF3b155|TA-8|Targ4	splicing factor 3b, subunit 1	protein-coding	0.070000	0.601990	-35(TTCCTTAAAAAG,-,0.00),-33(CCTTAAAAAGCC,+,0.00)
mm_30155.1	chr3	142853607	142853807	-	1	NA	NA	NA	28297	NM_178654	109333	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	0.015000	0.353234	
mm_41055.1	chr5	86804212	86804412	+	1	NA	NA	NA	46	NM_001347376	231386	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.095000	0.651741	
mm_24939.1	chr3	96561239	96561439	+	1	NA	NA	NA	3382	NM_023719	56338	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.010000	0.497512	
mm_22042.1	chr2	168207183	168207383	-	1	NA	NA	NA	-171	NM_001310088	11538	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0.050000	0.666667	
mm_62098.1	chr7	96210183	96210383	+	1	NA	NA	NA	-354	NM_011858	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.140000	0.736318	
mm_26853.1	chr3	14802520	14802720	-	1	NA	NA	NA	5745	NM_009799	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.035000	0.507463	
mm_7163.1	chr1	91984559	91984759	-	1	NA	NA	NA	183198	NM_007855	13345	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	0.025000	0.577114	
mm_60124.1	chr7	36698128	36698328	+	1	NA	NA	NA	110	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.130000	0.786070	
mm_72600.1	chr8	84415270	84415470	+	1	NA	NA	NA	6	NM_001252061	12286	Mm.334658	NM_007578	ENSMUSG00000034656	Cacna1a	APCA|BI|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|nmf352|rkr|smrl|tg	calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	protein-coding	0.160000	0.810945	
mm_106116.1	chr11	116358982	116359182	-	1	NA	NA	NA	-23728	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.030000	0.572139	
mm_5503.1	chr1	37418804	37419004	-	1	NA	NA	NA	11199	NM_198006	76178	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	0.010000	0.417910	
mm_85907.1	chr9	111056496	111056696	-	1	NA	NA	NA	648	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.035000	0.487562	
mm_59440.1	chr7	27132439	27132639	+	1	NA	NA	NA	12584	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.035000	0.482587	
mm_79901.1	chr9	65371602	65371802	+	1	NA	NA	NA	10642	NM_001111145	208080	Mm.291862	NM_001111145	ENSMUSG00000086228	Ubap1l	Gm514	ubiquitin-associated protein 1-like	protein-coding	0.005000	0.547264	
mm_172467.1	chr7	43177462	43177662	+	1	NA	NA	NA	-26	NM_001034893	668620	Mm.388871	NM_001034893	ENSMUSG00000064194	Zfp936	EG435970|EG668620|Gm9272|I1C0022H11Rik	zinc finger protein 936	protein-coding	0.025000	0.552239	
mm_36047.1	chr4	57300211	57300411	-	1	NA	NA	NA	1526	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.155000	0.781095	
mm_24316.1	chr3	89429501	89429701	+	1	NA	NA	NA	-613	NM_001293768	68911	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	0.005000	0.333333	
mm_113163.1	chr13	24804819	24805019	+	1	NA	NA	NA	3262	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.025000	0.457711	
mm_168473.1	chr11	48753546	48753746	-	1	NA	NA	NA	-46714	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.045000	0.512438	
mm_6736.1	chr1	82994643	82994843	-	1	NA	NA	NA	43705	NM_030556	80721	Mm.261542	NM_030556	ENSMUSG00000038496	Slc19a3	A230084E24Rik|AI788884|ThTr2	solute carrier family 19, member 3	protein-coding	0.020000	0.462687	
mm_2072.1	chr1	87637028	87637228	+	1	NA	NA	NA	16816	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.015000	0.477612	
mm_73482.1	chr8	107031020	107031220	+	1	NA	NA	NA	-206	NM_126165	116733	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0.085000	0.721393	
mm_125905.1	chr15	75993630	75993830	+	1	NA	NA	NA	-39	NM_177922	332110	Mm.40843	NM_177922	ENSMUSG00000063704	Mapk15	BC048082	mitogen-activated protein kinase 15	protein-coding	0.055000	0.641791	
mm_33250.1	chr4	127168198	127168398	+	1	NA	NA	NA	-906	NM_198618	242667	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	discs, large (Drosophila) homolog-associated protein 3	protein-coding	0.055000	0.651741	
mm_3128.1	chr1	134962461	134962661	+	1	NA	NA	NA	-4	NM_026024	67196	Mm.284587	NM_026024	ENSMUSG00000026429	Ube2t	2700084L22Rik|C80607	ubiquitin-conjugating enzyme E2T	protein-coding	0.100000	0.681592	
mm_130993.1	chr15	103429456	103429656	-	1	NA	NA	NA	871	NM_028797	74174	Mm.325325	NM_028797	ENSMUSG00000022487	Gtsf1	1700006H03Rik|Cue110	gametocyte specific factor 1	protein-coding	0.005000	0.422886	
mm_120346.1	chr14	63814546	63814746	+	1	NA	NA	NA	-45666	NM_028228	72400	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	0.020000	0.512438	
mm_64108.1	chr7	141060904	141061104	+	1	NA	NA	NA	-270	NM_177897	330671	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.145000	0.741294	
mm_123613.1	chr14	68120448	68120648	-	1	NA	NA	NA	-3204	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.020000	0.522388	
mm_1078.1	chr1	59482583	59482783	+	1	NA	NA	NA	536	NM_008057	14369	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.105000	0.666667	
mm_82138.1	chr9	123766866	123767066	+	1	NA	NA	NA	-245	NM_009913	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.010000	0.462687	
mm_84831.1	chr9	78209194	78209394	-	1	NA	NA	NA	17328	NM_010357	14860	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	0.005000	0.452736	
mm_59096.1	chr7	19696826	19697026	+	1	NA	NA	NA	1472	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.090000	0.656716	
mm_25767.1	chr3	125680906	125681106	+	1	NA	NA	NA	257544	NM_011674	22239	Mm.306021	NM_011674	ENSMUSG00000032854	Ugt8a	AI850488|AW455908|Cgt|Ugt8|mCerGT	UDP galactosyltransferase 8A	protein-coding	0.025000	0.487562	
mm_145895.1	chr18	65588020	65588220	+	1	NA	NA	NA	7890	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.015000	0.492537	
mm_74132.1	chr8	123206440	123206640	+	1	NA	NA	NA	6248	NM_145606	234852	Mm.41596	NM_145606	ENSMUSG00000000743	Chmp1a	2900018H07Rik|Pcoln3	charged multivesicular body protein 1A	protein-coding	0.090000	0.606965	
mm_103924.1	chr11	83640098	83640298	-	1	NA	NA	NA	9180	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.000000	0.562189	
mm_102387.1	chr11	58933176	58933376	-	1	NA	NA	NA	5630	NM_022423	108660	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	0.010000	0.592040	
mm_37626.1	chr4	127330681	127330881	-	1	NA	NA	NA	55	NM_001160012	14620	Mm.90003	NM_008126	ENSMUSG00000042367	Gjb3	Cnx31|Cx31|D4Wsu144e|Gjb-3	gap junction protein, beta 3	protein-coding	0.035000	0.557214	
mm_72105.1	chr8	71611030	71611230	+	1	NA	NA	NA	106	NM_146211	234407	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	0.105000	0.656716	-49(TTCCCTTTAAGG,-,0.00),-47(CCCTTTAAGGAG,+,0.00),-46(CCTTTAAGGAGC,+,0.00),7(CTCCTTTAAGGC,-,0.00),8(TCCTTTAAGGCG,+,0.00),9(CCTTTAAGGCGC,+,0.00)
mm_18808.1	chr2	73911226	73911426	-	1	NA	NA	NA	0	NM_175015	228033	Mm.2966	NM_175015	ENSMUSG00000018770	Atp5g3	6030447M23	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9)	protein-coding	0.105000	0.636816	
mm_158366.1	chrX	134964655	134964855	-	1	NA	NA	NA	-1	NM_031259	83454	Mm.103155	NM_031259	ENSMUSG00000009941	Nxf2	4930455N06Rik|Nxf-b	nuclear RNA export factor 2	protein-coding	0.085000	0.552239	
mm_42616.1	chr5	118027728	118027928	+	1	NA	NA	NA	4	NM_021344	57816	Mm.273285	NM_021344	ENSMUSG00000029359	Tesc	1010001A17Rik|2410011K10Rik|TE-1	tescalcin	protein-coding	0.170000	0.805970	-33(CGCTATAAGAGG,-,0.00)
mm_125726.1	chr15	73153412	73153612	+	1	NA	NA	NA	31435	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.005000	0.492537	
mm_114599.1	chr13	75769498	75769698	+	1	NA	NA	NA	62114	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.020000	0.388060	
mm_13593.1	chr2	112507007	112507207	+	1	NA	NA	NA	14143	NM_028844	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.020000	0.432836	
mm_134881.1	chr16	28930485	28930685	-	1	NA	NA	NA	-887	NM_177718	239796	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.005000	0.457711	
mm_113864.1	chr13	48261097	48261297	+	1	NA	NA	NA	-230	NM_031166	15904	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding	0.075000	0.557214	
mm_87832.1	chr10	60369588	60369788	+	1	NA	NA	NA	22837	NM_028732	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.020000	0.552239	
mm_99822.1	chr11	108747605	108747805	+	1	NA	NA	NA	65087	NM_029586	76380	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0.010000	0.522388	
mm_74588.1	chr8	11470253	11470453	-	1	NA	NA	NA	-7576	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.005000	0.388060	6(GGGTTTTAAAGC,-,0.00)
mm_55932.1	chr6	84588538	84588738	-	1	NA	NA	NA	5172	NM_175475	232174	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.135000	0.766169	
mm_44590.1	chr5	24995579	24995779	-	1	NA	NA	NA	74	NM_001310480	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.020000	0.587065	
mm_114252.1	chr13	56702948	56703148	+	1	NA	NA	NA	-4	NM_001164041	17129	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.160000	0.781095	
mm_96953.1	chr11	70606563	70606763	+	1	NA	NA	NA	-9231	NM_001145537	668433	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.035000	0.641791	
mm_137811.1	chr17	30005686	30005886	+	1	NA	NA	NA	699	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.020000	0.497512	
mm_12453.1	chr2	71211905	71212105	+	1	NA	NA	NA	59	NM_010064	13427	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0.125000	0.666667	
mm_30923.1	chr4	32733016	32733216	+	1	NA	NA	NA	-67143	NM_175364	108755	Mm.1182	NM_175364	ENSMUSG00000045854	Lyrm2	2610208E05Rik	LYR motif containing 2	protein-coding	0.000000	0.373134	
mm_90310.1	chr10	126998845	126999045	+	1	NA	NA	NA	505	NR_030259	723882		NR_030259	ENSMUSG00000072837	Mir546	Mirn546|mmu-mir-546	microRNA 546	ncRNA	0.010000	0.472637	
mm_112911.1	chr13	20917568	20917768	+	1	NA	NA	NA	123555	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.015000	0.348259	
mm_143192.1	chr17	62604857	62605057	-	1	NA	NA	NA	276360	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.010000	0.383085	
mm_21598.1	chr2	164237750	164237950	-	1	NA	NA	NA	491	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.030000	0.482587	
mm_16687.1	chr2	6884521	6884721	-	1	NA	NA	NA	375	NM_010160	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.020000	0.497512	
mm_160186.1	chr7	48643771	48643971	-	1	NA	NA	NA	-70	NM_207537	404238	Mm.377926	NM_207537	ENSMUSG00000070546	Mrgprb3	MrgB3	MAS-related GPR, member B3	protein-coding	0.005000	0.338308	-77(GTGCATAAAAGG,-,0.00)
mm_35884.1	chr4	49540790	49540990	-	1	NA	NA	NA	8656	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.000000	0.318408	
mm_90222.1	chr10	121034083	121034283	+	1	NA	NA	NA	179	NM_011915	24117	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0.060000	0.631841	
mm_153114.1	chr19	33012737	33012937	-	1	NA	NA	NA	255260	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.010000	0.368159	
mm_28128.1	chr3	86999260	86999460	-	1	NA	NA	NA	-20	NM_007639	12479	Mm.1894	NM_007639	ENSMUSG00000028076	Cd1d1	AI747460|CD1.1|Cd1a|Cd1d|Ly-38	CD1d1 antigen	protein-coding	0.050000	0.542289	
mm_129267.1	chr15	76906210	76906410	-	1	NA	NA	NA	2239	NM_012053	26961	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0.040000	0.547264	
mm_13163.1	chr2	92608228	92608428	+	1	NA	NA	NA	8621	NM_023850	76969	Mm.38021	NM_023850	ENSMUSG00000027221	Chst1	2610008E20Rik|AW125896|C6ST|GST-1|Gst1|KSGAL6ST	carbohydrate (keratan sulfate Gal-6) sulfotransferase 1	protein-coding	0.035000	0.502488	
mm_17331.1	chr2	26516281	26516481	-	1	NA	NA	NA	12454	NR_132655	102639736		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0.035000	0.562189	
mm_128445.1	chr15	50763263	50763463	-	1	NA	NA	NA	125686	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.010000	0.512438	
mm_106315.1	chr11	118302832	118303032	-	1	NA	NA	NA	-12688	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.010000	0.572139	
mm_130851.1	chr15	101954157	101954357	-	1	NA	NA	NA	30	NM_212487	332131	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0.035000	0.601990	
mm_173071.1	chrX	136068052	136068252	-	1	NA	NA	NA	84	NM_009749	12069	Mm.94160	NM_009749	ENSMUSG00000042750	Bex2	AL024066|Bex1	brain expressed X-linked 2	protein-coding	0.120000	0.761194	
mm_89283.1	chr10	87864929	87865129	+	1	NA	NA	NA	3918	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.010000	0.452736	
mm_60282.1	chr7	43969967	43970167	+	1	NA	NA	NA	3316	NM_010645	16623	Mm.447819	NM_010645	ENSMUSG00000063133	Klk1b1	Klk1|mGK-1|mK1	kallikrein 1-related peptidase b1	protein-coding	0.000000	0.522388	
mm_22980.1	chr3	32817552	32817752	+	1	NA	NA	NA	26	NM_001013024	72607	Mm.316153	NM_001013024	ENSMUSG00000056900	Usp13	2700071E21Rik|AI848077|ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding	0.140000	0.741294	
mm_27082.1	chr3	30013043	30013243	-	1	NA	NA	NA	61	NM_007963	14013	Mm.56965	NM_007963	ENSMUSG00000027684	Mecom	D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1	MDS1 and EVI1 complex locus	protein-coding	0.055000	0.631841	-35(CCCCTTTAAAGA,-,0.00),-34(CCCTTTAAAGAG,+,0.00),-34(CCCTTTAAAGAG,-,0.00),-32(CTTTAAAGAGAC,+,0.00)
mm_73602.1	chr8	109998854	109999054	+	1	NA	NA	NA	8518	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.015000	0.527363	
mm_161857.1	chr18	20895911	20896111	-	1	NA	NA	NA	67	NM_177038	75964	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0.115000	0.706468	
mm_14678.1	chr2	139601120	139601320	+	1	NA	NA	NA	-76958	NM_001276489	319909	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1, angiogenesis inhibitor	protein-coding	0.010000	0.323383	
mm_126170.1	chr15	78561113	78561313	+	1	NA	NA	NA	11570	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.015000	0.567164	
mm_103825.1	chr11	83012321	83012521	-	1	NA	NA	NA	8301	NM_001167743	276950	Mm.491599	NM_181545	ENSMUSG00000035208	Slfn8	-	schlafen 8	protein-coding	0.000000	0.298507	
mm_12456.1	chr2	71260750	71260950	+	1	NA	NA	NA	48904	NM_010064	13427	Mm.249479	NM_010064	ENSMUSG00000027012	Dync1i2	3110079H08Rik|AW554389|Dncic2	dynein cytoplasmic 1 intermediate chain 2	protein-coding	0.015000	0.422886	
mm_85886.1	chr9	111053564	111053764	-	1	NA	NA	NA	3580	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.010000	0.477612	
mm_67466.1	chr7	80406246	80406446	-	1	NA	NA	NA	-910	NM_001081454	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.015000	0.457711	
mm_20826.1	chr2	146261278	146261478	-	1	NA	NA	NA	2092	NR_040619	77806	Mm.392819	NR_040619	ENSMUSG00000085958	A930019D19Rik	-	RIKEN cDNA A930019D19 gene	ncRNA	0.005000	0.442786	
mm_123710.1	chr14	69805549	69805749	-	1	NA	NA	NA	-104	NM_153514	246710	Mm.102367	NM_153514	ENSMUSG00000022075	Rhobtb2	Dbc2|E130206H14Rik|mKIAA0717	Rho-related BTB domain containing 2	protein-coding	0.060000	0.562189	
mm_78087.1	chr9	17987702	17987902	+	1	NA	NA	NA	-304465	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.020000	0.557214	-82(GTATTTATAAGG,-,0.00)
mm_132597.1	chr16	38458854	38459054	+	1	NA	NA	NA	21	NM_009855	12519	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0.010000	0.442786	
mm_106379.1	chr11	118491140	118491340	-	1	NA	NA	NA	14280	NM_172573	217364	Mm.473963	NM_172573	ENSMUSG00000033857	Engase	C130099A03|D230014K01Rik	endo-beta-N-acetylglucosaminidase	protein-coding	0.040000	0.462687	
mm_128114.1	chr15	28025892	28026092	-	1	NA	NA	NA	-144	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.080000	0.656716	
mm_115828.1	chr13	21286407	21286607	-	1	NA	NA	NA	6179	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.005000	0.432836	
mm_42395.1	chr5	114937344	114937544	+	1	NA	NA	NA	-4758	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.030000	0.567164	
mm_11207.1	chr2	29346723	29346923	+	1	NA	NA	NA	13	NM_029615	68975	Mm.330109	NM_026896	ENSMUSG00000026799	Med27	1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e	mediator complex subunit 27	protein-coding	0.085000	0.601990	
mm_799.1	chr1	45347633	45347833	+	1	NA	NA	NA	36195	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.015000	0.472637	
mm_31092.1	chr4	41755212	41755412	+	1	NA	NA	NA	84	NM_016658	14430	Mm.439669	NM_016658	ENSMUSG00000036073	Galt	AW553376	galactose-1-phosphate uridyl transferase	protein-coding	0.030000	0.492537	
mm_59054.1	chr7	19414068	19414268	+	1	NA	NA	NA	3074	NM_007710	12715	Mm.2375	NM_007710	ENSMUSG00000030399	Ckm	Ckmm|M-CK|MCK	creatine kinase, muscle	protein-coding	0.035000	0.557214	
mm_27922.1	chr3	79532743	79532943	-	1	NA	NA	NA	34836	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.015000	0.378109	
mm_68210.1	chr7	104400741	104400941	-	1	NA	NA	NA	-42195	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.005000	0.422886	
mm_116234.1	chr13	33569217	33569417	-	1	NA	NA	NA	0	NR_131141	619715	Mm.390575	NR_131140		Gm6093	EG619715	predicted gene 6093	ncRNA	0.005000	0.442786	
mm_12692.1	chr2	76369937	76370137	+	1	NA	NA	NA	53	NM_153405	241490	Mm.33310	NM_153405	ENSMUSG00000042369	Rbm45	Drb1|Drbp1|G430095G15Rik	RNA binding motif protein 45	protein-coding	0.115000	0.726368	
mm_107911.1	chr12	70990214	70990414	+	1	NA	NA	NA	15691	NM_011184	19167	Mm.296338	NM_011184	ENSMUSG00000060073	Psma3	Lmpc8	proteasome (prosome, macropain) subunit, alpha type 3	protein-coding	0.000000	0.437811	
mm_92626.1	chr10	80320430	80320630	-	1	NA	NA	NA	18	NM_025521	66374	Mm.383824	NM_025521	ENSMUSG00000020133	2310011J03Rik	AI452186|AW545358	RIKEN cDNA 2310011J03 gene	protein-coding	0.100000	0.626866	-96(GGCTCTTTAAGA,-,0.00),-93(TCTTTAAGACGG,+,0.00)
mm_168321.1	chr11	114668542	114668742	+	1	NA	NA	NA	99	NM_001048057	67671	Mm.238817	NM_023372	ENSMUSG00000057322	Rpl38	0610025G13Rik|Rbt|Ts|Tss	ribosomal protein L38	protein-coding	0.105000	0.681592	
mm_162926.1	chr10	121750352	121750552	+	1	NA	NA	NA	10515	NM_173022	270802	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	0.055000	0.601990	
mm_34848.1	chr4	155466499	155466699	+	1	NA	NA	NA	-2515	NM_001253856	69671	Mm.45401	NM_027161	ENSMUSG00000023153	Tmem52	2310043I08Rik	transmembrane protein 52	protein-coding	0.010000	0.517413	
mm_51271.1	chr6	72115130	72115330	+	1	NA	NA	NA	7710	NR_045163	71265	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.020000	0.522388	47(CAGTATTTAAGC,-,0.00)
mm_88625.1	chr10	79880900	79881100	+	1	NA	NA	NA	1333	NM_011178	19152	Mm.2364	NM_011178	ENSMUSG00000057729	Prtn3	PR3|mPR3	proteinase 3	protein-coding	0.030000	0.587065	
mm_61291.1	chr7	67647421	67647621	+	1	NA	NA	NA	111	NM_025905	67009	Mm.249356	NM_025905	ENSMUSG00000030555	Ttc23	1600012K10Rik	tetratricopeptide repeat domain 23	protein-coding	0.010000	0.407960	
mm_48044.1	chr5	136438726	136438926	-	1	NA	NA	NA	-63023	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	0.005000	0.358209	
mm_6923.1	chr1	84840421	84840621	-	1	NA	NA	NA	680	NM_025386	66153	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.015000	0.472637	
mm_156807.1	chrX	163921148	163921348	+	1	NA	NA	NA	12231	NM_001290379	108012	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	0.015000	0.388060	
mm_96490.1	chr11	67798155	67798355	+	1	NA	NA	NA	-16	NM_001013013	68460	Mm.22167	NM_001013013	ENSMUSG00000033044	Dhrs7c	1110001P11Rik|AI120487|SRP-35	dehydrogenase/reductase (SDR family) member 7C	protein-coding	0.010000	0.393035	
mm_18640.1	chr2	69414535	69414735	-	1	NA	NA	NA	34173	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.015000	0.427861	
mm_116858.1	chr13	54765539	54765739	-	1	NA	NA	NA	801	NM_033610	104069	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	0.045000	0.646766	
mm_121443.1	chr14	120430155	120430355	+	1	NA	NA	NA	-48206	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.010000	0.218905	-57(TACTATATATGG,-,0.00)
mm_76097.1	chr8	80057903	80058103	-	1	NA	NA	NA	5	NM_020259	15245	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0.115000	0.691542	
mm_52388.1	chr6	113282235	113282435	+	1	NA	NA	NA	28	NM_170673	211232	Mm.65597	NM_170673	ENSMUSG00000030270	Cpne9	A730016F12Rik|mKIAA4217	copine family member IX	protein-coding	0.085000	0.731343	
mm_163992.1	chr14	63834997	63835197	+	1	NA	NA	NA	-25215	NM_028228	72400	Mm.379214	NM_028228	ENSMUSG00000021958	Pinx1	2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1	PIN2/TERF1 interacting, telomerase inhibitor 1	protein-coding	0.000000	0.402985	
mm_127550.1	chr15	102147788	102147988	+	1	NA	NA	NA	-2687	NM_146064	223920	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	0.030000	0.567164	
mm_114690.1	chr13	81783164	81783364	+	1	NA	NA	NA	-28	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.065000	0.562189	
mm_140792.1	chr17	19574288	19574488	-	1	NA	NA	NA	-2843	NM_001104563	627576	Mm.469857	NM_001104563	ENSMUSG00000094892	Vmn2r101	EG627576	vomeronasal 2, receptor 101	protein-coding	0.015000	0.393035	
mm_122111.1	chr14	30943185	30943385	-	1	NA	NA	NA	4	NM_008406	16424	Mm.3227	NM_008406	ENSMUSG00000006529	Itih1	ITI-HC1|Intin1|Itih-1	inter-alpha trypsin inhibitor, heavy chain 1	protein-coding	0.020000	0.542289	
mm_94672.1	chr11	17324857	17325057	+	1	NA	NA	NA	67269	NM_001330649	57316	Mm.287982	NM_020558	ENSMUSG00000000581	C1d	1110036E10Rik|AI875855|SUN-CoR	C1D nuclear receptor co-repressor	protein-coding	0.010000	0.437811	73(CTGTTTAAAGGG,-,0.00)
mm_41559.1	chr5	93093424	93093624	+	1	NA	NA	NA	108	NM_001347377	52398	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.115000	0.731343	
mm_38045.1	chr4	133967838	133968038	-	1	NA	NA	NA	53	NM_016957	15331	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	0.100000	0.631841	-1(CGCTATAAAAAC,-,0.00),10(CTTTATAAACCC,+,0.00)
mm_34415.1	chr4	145267948	145268148	+	1	NA	NA	NA	-21178	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.000000	0.547264	
mm_136741.1	chr17	8340629	8340829	+	1	NA	NA	NA	-10	NM_178774	320111	Mm.442510	NM_178774	ENSMUSG00000055945	Prr18	9630019K15Rik	proline rich 18	protein-coding	0.100000	0.726368	
mm_70461.1	chr8	11840474	11840674	+	1	NA	NA	NA	53	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	0.010000	0.527363	9(CTTCTTAGAGGC,+,0.00)
mm_18371.1	chr2	59942933	59943133	-	1	NA	NA	NA	-60427	NM_028118	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.005000	0.412935	
mm_172067.1	chr6	136532917	136533117	+	1	NA	NA	NA	14166	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.000000	0.452736	
mm_120632.1	chr14	70466628	70466828	+	1	NA	NA	NA	9211	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.015000	0.552239	
mm_168341.1	chr11	120594666	120594866	-	1	NA	NA	NA	3599	NM_011568	21681	Mm.1886	NM_011568	ENSMUSG00000025134	Alyref	ALY|REF1|Refbp1|Thoc4	Aly/REF export factor	protein-coding	0.005000	0.368159	
mm_94399.1	chr11	5628647	5628847	+	1	NA	NA	NA	59063	NM_023816	76389	Mm.67300	NM_023816	ENSMUSG00000020481	Ankrd36	1700008J08Rik|1700012M14Rik|Ankrd48	ankyrin repeat domain 36	protein-coding	0.035000	0.542289	
mm_112449.1	chr13	5861769	5861969	+	1	NA	NA	NA	380	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.055000	0.487562	
mm_97098.1	chr11	73267419	73267619	+	1	NA	NA	NA	-101	NM_145099	246788	Mm.75196	NM_145099	ENSMUSG00000043029	Trpv3	1110036I10Rik|AI644701|Nh|VRL3	transient receptor potential cation channel, subfamily V, member 3	protein-coding	0.035000	0.621891	
mm_158300.1	chrX	116287281	116287481	-	1	NA	NA	NA	-161563	NM_001033471	382239	Mm.336224	NM_001033471	ENSMUSG00000072995	Cpxcr1	Gm1143	CPX chromosome region, candidate 1	protein-coding	0.060000	0.457711	
mm_114463.1	chr13	67728651	67728851	+	1	NA	NA	NA	422	NM_145622	235907	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	0.015000	0.517413	
mm_32062.1	chr4	97777667	97777867	+	1	NA	NA	NA	141	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.085000	0.587065	
mm_125377.1	chr15	40654817	40655017	+	1	NA	NA	NA	-125	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding	0.080000	0.676617	
mm_10665.1	chr2	20796746	20796946	+	1	NA	NA	NA	170875	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.000000	0.422886	
mm_48576.1	chr5	143405149	143405349	-	1	NA	NA	NA	1429	NM_025841	66913	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	0.010000	0.402985	
mm_68973.1	chr7	126585460	126585660	-	1	NA	NA	NA	257	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.005000	0.567164	
mm_62670.1	chr7	109010744	109010944	+	1	NA	NA	NA	-36	NM_021885	22141	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby candidate gene	protein-coding	0.155000	0.805970	
mm_75608.1	chr8	61927906	61928106	-	1	NA	NA	NA	-81	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.020000	0.432836	-92(CCTTTTATAAGT,+,0.00)
mm_25390.1	chr3	107218089	107218289	+	1	NA	NA	NA	3543	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.010000	0.507463	
mm_33653.1	chr4	133077426	133077626	+	1	NA	NA	NA	-53107	NM_153423	242687	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.015000	0.388060	
mm_141049.1	chr17	25433683	25433883	-	1	NA	NA	NA	0	NM_021415	58226	Mm.268378	NM_021415	ENSMUSG00000024112	Cacna1h	Cav3.2|MNCb-1209|alpha13.2	calcium channel, voltage-dependent, T type, alpha 1H subunit	protein-coding	0.140000	0.796020	
mm_172536.1	chr7	95041781	95041981	-	1	NA	NA	NA	-1129363	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.005000	0.437811	
mm_34946.1	chr4	155892193	155892393	+	1	NA	NA	NA	418	NM_207223	140500	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	0.165000	0.791045	
mm_6252.1	chr1	68938543	68938743	-	1	NA	NA	NA	169416	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	0.005000	0.333333	
mm_89770.1	chr10	100099074	100099274	+	1	NA	NA	NA	83353	NM_013598	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.010000	0.402985	
mm_81925.1	chr9	120174869	120175069	+	1	NA	NA	NA	25227	NM_001039364	17433	Mm.486167	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.020000	0.542289	
mm_124782.1	chr15	7442410	7442610	+	1	NA	NA	NA	-44115	NM_001289498	268780	Mm.203208	NM_178748	ENSMUSG00000042961	Egflam	5930412K08|AU040377	EGF-like, fibronectin type III and laminin G domains	protein-coding	0.030000	0.452736	
mm_43088.1	chr5	124450315	124450515	+	1	NA	NA	NA	3711	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.015000	0.572139	
mm_68403.1	chr7	109616239	109616439	-	1	NA	NA	NA	229	NR_037617	76954	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.020000	0.587065	
mm_113744.1	chr13	44729701	44729901	+	1	NA	NA	NA	-973	NM_021878	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.075000	0.641791	
mm_26772.1	chr3	8963969	8964169	-	1	NA	NA	NA	-15	NM_001025261	21985	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.065000	0.686567	
mm_39981.1	chr5	32459083	32459283	+	1	NA	NA	NA	213	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.130000	0.721393	
mm_93262.1	chr10	95564045	95564245	-	1	NA	NA	NA	22	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.190000	0.781095	-33(CCGCTTAAATGC,-,0.00),-31(GCTTAAATGCGG,+,0.00)
mm_139816.1	chr17	67020958	67021158	+	1	NA	NA	NA	5177	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.015000	0.422886	
mm_80986.1	chr9	103224969	103225169	+	1	NA	NA	NA	5217	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.015000	0.547264	
mm_135181.1	chr16	35981654	35981854	-	1	NA	NA	NA	-1609	NM_008465	16646	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0.035000	0.467662	
mm_9561.1	chr1	173974902	173975102	-	1	NA	NA	NA	7842	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.005000	0.363184	
mm_96912.1	chr11	70459828	70460028	+	1	NA	NA	NA	56	NM_023158	66102	Mm.425692	NM_023158	ENSMUSG00000018920	Cxcl16	0910001K24Rik|AV290116|BB024863|CXCL16v1|CXCL16v2|SR-PSOX|Zmynd15|b2b498Clo	chemokine (C-X-C motif) ligand 16	protein-coding	0.015000	0.517413	
mm_131940.1	chr16	23988872	23989072	+	1	NA	NA	NA	-360	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.095000	0.592040	
mm_101284.1	chr11	21571943	21572143	-	1	NA	NA	NA	-109	NM_001316675	17449	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	0.080000	0.626866	
mm_169973.1	chr17	14094322	14094522	-	1	NA	NA	NA	109409	NM_172826	240025	Mm.79993	NM_172826	ENSMUSG00000048826	Dact2	2900084M21Rik|A630024E20|Dpr2|Frd2|dapper2	dishevelled-binding antagonist of beta-catenin 2	protein-coding	0.020000	0.567164	
mm_130620.1	chr15	100403164	100403364	-	1	NA	NA	NA	19791	NM_001146161	18174	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0.045000	0.487562	
mm_95136.1	chr11	34833646	34833846	+	1	NA	NA	NA	-105	NM_027411	70385	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0.075000	0.517413	
mm_142982.1	chr17	56276609	56276809	-	1	NA	NA	NA	58	NM_174989	106759	Mm.203952	NM_174989	ENSMUSG00000047123	Ticam1	AW046014|AW547018|TICAM-1|TRIF	toll-like receptor adaptor molecule 1	protein-coding	0.055000	0.661692	
mm_166265.1	chr5	88328107	88328307	-	1	NA	NA	NA	10895	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.010000	0.497512	
mm_29919.1	chr3	131490107	131490307	-	1	NA	NA	NA	-74561	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.170000	0.820896	
mm_97530.1	chr11	78512170	78512370	+	1	NA	NA	NA	-26	NM_026389	67811	Mm.197493	NM_026389	ENSMUSG00000001100	Poldip2	1300003F06Rik|Pdip38	polymerase (DNA-directed), delta interacting protein 2	protein-coding	0.125000	0.791045	
mm_152254.1	chr19	8740475	8740675	-	1	NA	NA	NA	-143	NM_001177347	74307	Mm.48791	NM_001177347	ENSMUSG00000090840	1700092M07Rik	-	RIKEN cDNA 1700092M07 gene	protein-coding	0.030000	0.532338	
mm_84197.1	chr9	60649576	60649776	-	1	NA	NA	NA	37858	NM_001311095	102747	Mm.269413	NM_145616	ENSMUSG00000047766	Lrrc49	AI430817|AW050057|D430025H09Rik|PGs4|p79	leucine rich repeat containing 49	protein-coding	0.030000	0.517413	
mm_64911.1	chr7	16204084	16204284	-	1	NA	NA	NA	17809	NM_001285931	71723	Mm.75259	NM_027883	ENSMUSG00000006019	Dhx34	1200013B07Rik|1810012L18Rik|Ddx34|mKIAA0134	DEAH (Asp-Glu-Ala-His) box polypeptide 34	protein-coding	0.010000	0.587065	
mm_19970.1	chr2	118011771	118011971	-	1	NA	NA	NA	99331	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA	0.015000	0.517413	
mm_49956.1	chr6	40628520	40628720	+	1	NA	NA	NA	-211	NM_001171003	232714	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding	0.020000	0.427861	
mm_121433.1	chr14	120412209	120412409	+	1	NA	NA	NA	-66152	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.005000	0.467662	
mm_81916.1	chr9	120114827	120115027	+	1	NA	NA	NA	4528	NM_144793	208638	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0.010000	0.532338	
mm_60233.1	chr7	43690057	43690257	+	1	NA	NA	NA	-261	NM_174866	317653	Mm.247377	NM_174866	ENSMUSG00000044737	Klk14	GK14	kallikrein related-peptidase 14	protein-coding	0.010000	0.562189	
mm_37307.1	chr4	119294323	119294523	-	1	NA	NA	NA	90	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.125000	0.736318	
mm_118320.1	chr13	113600629	113600829	-	1	NA	NA	NA	17835	NM_130796	170625	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.030000	0.582090	
mm_63464.1	chr7	127573548	127573748	+	1	NA	NA	NA	300	NM_026888	68961	Mm.274473	NM_026888	ENSMUSG00000030815	Phkg2	1500017I02Rik	phosphorylase kinase, gamma 2 (testis)	protein-coding	0.050000	0.666667	
mm_103760.1	chr11	81075653	81075853	-	1	NA	NA	NA	77150	NM_007384	11418	Mm.234998	NM_007384	ENSMUSG00000020704	Asic2	ACIC2|Accn1|BNC1|BNaC1|BNaC1a|Mdeg	acid-sensing (proton-gated) ion channel 2	protein-coding	0.010000	0.343284	
mm_52029.1	chr6	96032909	96033109	+	1	NA	NA	NA	-80145	NM_182808	320265	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.035000	0.537313	
mm_74836.1	chr8	23208926	23209126	-	1	NA	NA	NA	-573	NM_018743	102247	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	0.030000	0.487562	89(TGTCTTAAAAGG,-,0.00)
mm_20472.1	chr2	129410360	129410560	-	1	NA	NA	NA	-39321	NM_008361	16176	Mm.222830	NM_008361	ENSMUSG00000027398	Il1b	IL-1beta|Il-1b	interleukin 1 beta	protein-coding	0.020000	0.452736	
mm_7890.1	chr1	133258410	133258610	-	1	NA	NA	NA	11298	NR_037984	100502933	Mm.487491	NR_037984	ENSMUSG00000101693	Gm19461	-	predicted gene, 19461	ncRNA	0.015000	0.497512	21(CCCTTTAAGAGG,-,0.00),22(CCTTTAAGAGGA,+,0.00)
mm_134849.1	chr16	27370116	27370316	-	1	NA	NA	NA	23	NM_198166	224065	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	0.020000	0.398010	-32(ACCTTTTAAAGG,-,0.00),-31(CCTTTTAAAGGC,+,0.00),-30(CTTTTAAAGGCA,+,0.00)
mm_84580.1	chr9	69443227	69443427	-	1	NA	NA	NA	-10356	NM_007585	12306	Mm.238343	NM_007585	ENSMUSG00000032231	Anxa2	AW215814|Cal1h	annexin A2	protein-coding	0.005000	0.482587	
mm_41940.1	chr5	105731595	105731795	+	1	NA	NA	NA	30885	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.015000	0.507463	
mm_19980.1	chr2	118478932	118479132	-	1	NA	NA	NA	664	NM_009273	20813	Mm.363404	NM_009273	ENSMUSG00000009549	Srp14	14kDa|AW536328	signal recognition particle 14	protein-coding	0.045000	0.512438	
mm_135474.1	chr16	45926310	45926510	-	1	NA	NA	NA	-82032	NM_001252442	208177	Mm.211477	NM_153412	ENSMUSG00000033149	Phldb2	AV253284|C820004H04Rik|LL5b|LL5beta	pleckstrin homology like domain, family B, member 2	protein-coding	0.010000	0.482587	
mm_139685.1	chr17	57419311	57419511	+	1	NA	NA	NA	60725	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.402985	
mm_143563.1	chr17	74243410	74243610	-	1	NA	NA	NA	51353	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.010000	0.358209	
mm_76369.1	chr8	84800178	84800378	-	1	NA	NA	NA	60	NM_010906	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.210000	0.791045	
mm_113031.1	chr13	23493751	23493951	+	1	NA	NA	NA	-4994	NM_001289614	238555	Mm.129668	NM_175938	ENSMUSG00000053216	Btn2a2	Btn2|D030063K05	butyrophilin, subfamily 2, member A2	protein-coding	0.005000	0.467662	
mm_23578.1	chr3	63380337	63380537	+	1	NA	NA	NA	84342	NM_001289463	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.025000	0.462687	
mm_46308.1	chr5	100562912	100563112	-	1	NA	NA	NA	9193	NM_139198	231507	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.025000	0.522388	
mm_121761.1	chr14	19653310	19653510	-	1	NA	NA	NA	-50823	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.000000	0.447761	-96(CCCTTTAAATGA,-,0.00),87(GGCTAGAAAAGA,-,0.00)
mm_157639.1	chrX	57223815	57224015	-	1	NA	NA	NA	11772	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.005000	0.432836	
mm_107068.1	chr12	16894799	16894999	+	1	NA	NA	NA	-79	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0.190000	0.820896	
mm_2153.1	chr1	88186489	88186689	+	1	NA	NA	NA	-14022	NM_013701	22236	Mm.300095	NM_013701	ENSMUSG00000090171	Ugt1a2	UDPGT 1-2|Ugt1	UDP glucuronosyltransferase 1 family, polypeptide A2	protein-coding	0.005000	0.422886	
mm_9803.1	chr1	181901395	181901595	-	1	NA	NA	NA	-59094	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.010000	0.343284	
mm_105337.1	chr11	102994585	102994785	-	1	NA	NA	NA	5236	NR_105896	102466988		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.040000	0.616915	
mm_14119.1	chr2	125893283	125893483	+	1	NA	NA	NA	27160	NM_001291002	69976	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	0.015000	0.363184	44(GCTTTAAGGGAA,+,0.00)
mm_155422.1	chrX	73491917	73492117	+	1	NA	NA	NA	8416	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.025000	0.522388	
mm_96943.1	chr11	70540428	70540628	+	1	NA	NA	NA	256	NM_001302476	18806	Mm.260177	NM_008876	ENSMUSG00000020828	Pld2	PLD1C	phospholipase D2	protein-coding	0.060000	0.611940	
mm_62467.1	chr7	101663666	101663866	+	1	NA	NA	NA	-2	NM_009191	20480	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	0.085000	0.611940	-50(CACCTTATAAGC,-,0.00),-48(CCTTATAAGCGG,+,0.00)
mm_124520.1	chr14	122023991	122024191	-	1	NA	NA	NA	-10583	NM_001037744	223262	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.000000	0.467662	
mm_153110.1	chr19	32956949	32957149	-	1	NA	NA	NA	199472	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.050000	0.577114	
mm_6971.1	chr1	86301296	86301496	-	1	NA	NA	NA	-1825	NM_145222	227327	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.005000	0.522388	
mm_92170.1	chr10	67571858	67572058	-	1	NA	NA	NA	-23003	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.005000	0.467662	
mm_121561.1	chr14	122484311	122484511	+	1	NA	NA	NA	9027	NM_009574	22772	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0.030000	0.572139	
mm_64512.1	chr7	143757010	143757210	+	1	NA	NA	NA	9883	NM_203492	381974	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	0.060000	0.646766	
mm_12537.1	chr2	72285719	72285919	+	1	NA	NA	NA	118	NM_178084	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.150000	0.751244	
mm_70899.1	chr8	25601544	25601744	+	1	NA	NA	NA	43	NM_001308481	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.105000	0.736318	
mm_39420.1	chr5	15934675	15934875	+	1	NA	NA	NA	84	NM_001110844	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.155000	0.781095	
mm_126996.1	chr15	95095303	95095503	+	1	NA	NA	NA	53915	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA	0.005000	0.363184	
mm_114812.1	chr13	91504383	91504583	+	1	NA	NA	NA	43386	NM_024186	66970	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.010000	0.298507	49(GTTTTTAAACTC,+,0.00)
mm_50461.1	chr6	48908740	48908940	+	1	NA	NA	NA	3854	NM_001161621	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.010000	0.482587	
mm_59635.1	chr7	28157489	28157689	+	1	NA	NA	NA	-12159	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.030000	0.462687	
mm_74352.1	chr8	128148687	128148887	+	1	NA	NA	NA	129438	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.000000	0.522388	
mm_119197.1	chr14	32599827	32600027	+	1	NA	NA	NA	0	NM_001001796	107751	Mm.119274	NM_001001796	ENSMUSG00000041730	Prrxl1	Drg11|Drgx	paired related homeobox protein-like 1	protein-coding	0.055000	0.666667	
mm_136484.1	chr16	96082269	96082469	-	1	NA	NA	NA	59	NM_001103179	93871	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0.200000	0.800995	
mm_105715.1	chr11	108343849	108344049	-	1	NA	NA	NA	-61	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.170000	0.766169	
mm_112130.1	chr12	112942026	112942226	-	1	NA	NA	NA	16	NM_025399	66174	Mm.7070	NM_025399	ENSMUSG00000002804	Nudt14	1110030M18Rik|UGPPase	nudix (nucleoside diphosphate linked moiety X)-type motif 14	protein-coding	0.125000	0.726368	
mm_34661.1	chr4	150866877	150867077	+	1	NA	NA	NA	11886	NM_133753	74155	Mm.318841	NM_133753	ENSMUSG00000028967	Errfi1	1300002F13Rik|AI788755|Mig-6|Mig6|RALT	ERBB receptor feedback inhibitor 1	protein-coding	0.015000	0.532338	
mm_83417.1	chr9	44882098	44882298	-	1	NA	NA	NA	-924	NM_001081049	214162	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	0.075000	0.641791	
mm_102629.1	chr11	62538957	62539157	-	1	NA	NA	NA	204	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.170000	0.830846	
mm_25490.1	chr3	109340537	109340737	+	1	NA	NA	NA	-46	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.130000	0.791045	
mm_158766.1	chrX	166585499	166585699	-	1	NA	NA	NA	117	NM_019397	54156	Mm.37707	NM_019397	ENSMUSG00000000402	Egfl6	Maeg	EGF-like-domain, multiple 6	protein-coding	0.055000	0.661692	
mm_13294.1	chr2	101992067	101992267	+	1	NA	NA	NA	105905	NM_029635	76501	Mm.330424	NM_029635	ENSMUSG00000027163	Commd9	1810029F08Rik|AA409293	COMM domain containing 9	protein-coding	0.010000	0.333333	
mm_39800.1	chr5	30622599	30622799	+	1	NA	NA	NA	-25237	NR_049199	100885838		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.105000	0.696517	
mm_135412.1	chr16	45025306	45025506	-	1	NA	NA	NA	-68647	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.005000	0.402985	
mm_135614.1	chr16	52270671	52270871	-	1	NA	NA	NA	182310	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.412935	
mm_106833.1	chr12	8004883	8005083	+	1	NA	NA	NA	27306	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.492537	
mm_61099.1	chr7	51879118	51879318	+	1	NA	NA	NA	251	NM_001330607	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.045000	0.691542	
mm_160599.1	chr9	75409159	75409359	-	1	NA	NA	NA	100	NM_027418	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.075000	0.587065	
mm_111197.1	chr12	84193937	84194137	-	1	NA	NA	NA	-22	NM_001163502	238317	Mm.31256	NM_001163501	ENSMUSG00000042507	Elmsan1	9430029N19Rik|C130039O16Rik|Gm260	ELM2 and Myb/SANT-like domain containing 1	protein-coding	0.095000	0.666667	
mm_132860.1	chr16	48431202	48431402	+	1	NA	NA	NA	65	NM_010816	17450	Mm.250060	NM_010816	ENSMUSG00000022652	Morc1	Morc	microrchidia 1	protein-coding	0.065000	0.582090	
mm_126023.1	chr15	76695594	76695794	+	1	NA	NA	NA	-1032	NM_182805	76282	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	0.010000	0.567164	
mm_96567.1	chr11	69027215	69027415	+	1	NA	NA	NA	11404	NM_001013256	68964	Mm.285785	NM_001013256	ENSMUSG00000020898	Ctc1	1500010J02Rik|AAF-132|AAF132	CTS telomere maintenance complex component 1	protein-coding	0.025000	0.507463	
mm_81141.1	chr9	106821844	106822044	+	1	NA	NA	NA	-32	NM_001015507	321006	Mm.440089	NM_001015507	ENSMUSG00000040325	Vprbp	AI447437|B930007L02Rik|mKIAA0800	Vpr (HIV-1) binding protein	protein-coding	0.110000	0.631841	
mm_80173.1	chr9	72111089	72111289	+	1	NA	NA	NA	12	NM_001253862	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.130000	0.721393	
mm_143948.1	chr17	86798799	86798999	-	1	NA	NA	NA	45035	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.010000	0.417910	
mm_47361.1	chr5	122849781	122849981	-	1	NA	NA	NA	-307	NM_030564	80751	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	0.080000	0.597015	
mm_109187.1	chr12	108488136	108488336	+	1	NA	NA	NA	65420	NM_001043335	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.025000	0.532338	
mm_92093.1	chr10	62865238	62865438	-	1	NA	NA	NA	14676	NM_027384	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.010000	0.527363	
mm_9548.1	chr1	173921559	173921759	-	1	NA	NA	NA	-8613	NM_001033450	381308	Mm.490248	NM_001033450	ENSMUSG00000026536	Ifi211	A730048F03|Ifi205b|Mnda|ifi-205-B	interferon activated gene 211	protein-coding	0.005000	0.467662	
mm_145048.1	chr18	40256199	40256399	+	1	NA	NA	NA	-663	NR_045177	73001	Mm.428647	NR_045177	ENSMUSG00000071860	2900055J20Rik	-	RIKEN cDNA 2900055J20 gene	ncRNA	0.015000	0.507463	
mm_153964.1	chr19	47837198	47837398	-	1	NA	NA	NA	63	NM_027559	100048534	Mm.29457	NM_027559	ENSMUSG00000044948	Cfap43	4632415N18Rik|4930428C11Rik|4930463G05Rik|AI429486|D19Ertd652e|Wdr96	cilia and flagella associated protein 43	protein-coding	0.100000	0.706468	
mm_76603.1	chr8	90348190	90348390	-	1	NA	NA	NA	-38	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding	0.170000	0.835821	
mm_89150.1	chr10	86022016	86022216	+	1	NA	NA	NA	-38	NM_001310745	69754	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	0.130000	0.721393	
mm_40852.1	chr5	73490978	73491178	+	1	NA	NA	NA	52	NM_178896	100737	Mm.220312	NM_178896	ENSMUSG00000051674	Dcun1d4	AI836376	DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)	protein-coding	0.100000	0.676617	
mm_75205.1	chr8	39604952	39605152	-	1	NA	NA	NA	37626	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.005000	0.208955	
mm_67827.1	chr7	98309393	98309593	-	1	NA	NA	NA	34	NM_025408	66190	Mm.334041	NM_025408	ENSMUSG00000030760	Acer3	1110057L18Rik|5430429L08Rik|AV015045|Phca	alkaline ceramidase 3	protein-coding	0.075000	0.691542	
mm_52275.1	chr6	108658665	108658865	+	1	NA	NA	NA	-1864	NM_011498	20893	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0.040000	0.542289	
mm_125892.1	chr15	75867036	75867236	+	1	NA	NA	NA	4797	NM_026960	69146	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	0.015000	0.552239	
mm_89259.1	chr10	87859262	87859462	+	1	NA	NA	NA	310	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.015000	0.378109	
mm_158472.1	chrX	141207525	141207725	-	1	NA	NA	NA	-250914	NM_001164177	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	0.005000	0.358209	
mm_69865.1	chr7	141443903	141444103	-	1	NA	NA	NA	-648	NM_022654	57913	Mm.334321	NM_022654	ENSMUSG00000025507	Pidd1	1200011D09Rik|AU042446|Lrdd|Pidd	p53 induced death domain protein 1	protein-coding	0.095000	0.661692	
mm_47794.1	chr5	132437320	132437520	-	1	NA	NA	NA	104923	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.000000	0.228856	
mm_22717.1	chr3	19310754	19310954	+	1	NA	NA	NA	468	NM_001122759	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.090000	0.691542	
mm_98843.1	chr11	97598414	97598614	+	1	NA	NA	NA	3	NR_045496	69729	Mm.233452	NR_045496	ENSMUSG00000085860	2410003L11Rik	-	RIKEN cDNA 2410003L11 gene	ncRNA	0.005000	0.522388	
mm_153296.1	chr19	37697584	37697784	-	1	NA	NA	NA	-124	NM_007811	13082	Mm.42230	NM_007811	ENSMUSG00000024987	Cyp26a1	Cyp26|P450RA|P450RAI|RAH	cytochrome P450, family 26, subfamily a, polypeptide 1	protein-coding	0.080000	0.611940	
mm_57305.1	chr6	124711955	124712155	-	1	NA	NA	NA	123	NM_013536	14791	Mm.6390	NM_013536	ENSMUSG00000004268	Emg1	C2f|Grcc2f	EMG1 N1-specific pseudouridine methyltransferase	protein-coding	0.070000	0.557214	
mm_112347.1	chr12	117151170	117151370	-	1	NA	NA	NA	-1	NR_033538	100038689	Mm.445351	NR_033538	ENSMUSG00000099907	Gm10421	ENSMUSG00000072792	predicted gene 10421	ncRNA	0.085000	0.666667	
mm_28242.1	chr3	88461209	88461409	-	1	NA	NA	NA	-127	NM_001163489	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.010000	0.616915	11(GTCTCTTTAAGA,-,0.00),13(CTCTTTAAGAGC,-,0.00),14(TCTTTAAGAGCT,+,0.00)
mm_161391.1	chr14	93888214	93888414	-	1	NA	NA	NA	574	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.020000	0.452736	
mm_19651.1	chr2	102895964	102896164	-	1	NA	NA	NA	5601	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.005000	0.383085	
mm_11498.1	chr2	32534494	32534694	+	1	NA	NA	NA	-765	NM_153560	98952	Mm.4065	NM_153560	ENSMUSG00000039157	Fam102a	AI426465|C230093N12Rik|Eeig1	family with sequence similarity 102, member A	protein-coding	0.035000	0.497512	
mm_95928.1	chr11	58330661	58330861	+	1	NA	NA	NA	-29	NM_001308168	79566	Mm.290534	NM_024480	ENSMUSG00000013646	Sh3bp5l	2310074E09Rik|BC003251|mKIAA1720	SH3 binding domain protein 5 like	protein-coding	0.065000	0.497512	
mm_141569.1	chr17	32284583	32284783	-	1	NA	NA	NA	-550	NM_020508	57261	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0.170000	0.776119	
mm_35067.1	chr4	6454196	6454396	-	1	NA	NA	NA	-25	NM_010945	18201	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.100000	0.656716	
mm_135505.1	chr16	46498436	46498636	-	1	NA	NA	NA	-1569	NM_021497	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.020000	0.507463	
mm_64130.1	chr7	141167905	141168105	+	1	NA	NA	NA	681	NM_001172101	107702	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.005000	0.532338	
mm_160780.1	chr10	127451936	127452136	+	1	NA	NA	NA	31169	NM_001168293	71750	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.005000	0.407960	
mm_22245.1	chr2	174614000	174614200	-	1	NA	NA	NA	-29434	NM_001099328	100043757	Mm.48711	NM_001099328	ENSMUSG00000050600	Zfp831	ENSMUSG00000050600|OTTMUSG00000017459	zinc finger protein 831	protein-coding	0.025000	0.517413	-89(GCCCAGAAAGGG,-,0.00)
mm_58465.1	chr7	3367291	3367491	+	1	NA	NA	NA	-26651	NM_133190	81905	Mm.357990	NM_133190	ENSMUSG00000053395	Cacng8	-	calcium channel, voltage-dependent, gamma subunit 8	protein-coding	0.025000	0.567164	
mm_167020.1	chr7	65472108	65472308	+	1	NA	NA	NA	-100964	NM_009386	21872	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.005000	0.527363	
mm_99179.1	chr11	100860082	100860282	+	1	NA	NA	NA	-302	NM_001164062	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.030000	0.636816	
mm_78502.1	chr9	32743845	32744045	+	1	NA	NA	NA	47903	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.030000	0.552239	
mm_167843.1	chrM	13951	14151	-	1	NA	NA	NA	NA	NA									0.010000	0.318408	54(CTATTTATGGAG,+,0.00)
mm_34275.1	chr4	141424335	141424535	+	1	NA	NA	NA	3656	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.010000	0.562189	
mm_52386.1	chr6	113267780	113267980	+	1	NA	NA	NA	-14427	NM_170673	211232	Mm.65597	NM_170673	ENSMUSG00000030270	Cpne9	A730016F12Rik|mKIAA4217	copine family member IX	protein-coding	0.000000	0.383085	
mm_13731.1	chr2	117989405	117989605	+	1	NA	NA	NA	121697	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA	0.025000	0.497512	
mm_46299.1	chr5	100429439	100429639	-	1	NA	NA	NA	-4	NR_034038	100503199	Mm.392282	NR_034038	ENSMUSG00000097772	5430416N02Rik	100041797|Adapt33|Gm3514	RIKEN cDNA 5430416N02 gene	ncRNA	0.090000	0.597015	-12(GCGCCTTTAAGG,-,0.00),-11(CGCCTTTAAGGG,-,0.00),-10(GCCTTTAAGGGC,+,0.00),-10(GCCTTTAAGGGC,-,0.00),-9(CCTTTAAGGGCC,+,0.00)
mm_56718.1	chr6	115536884	115537084	-	1	NA	NA	NA	-7720	NM_199033	381802	Mm.291208	NM_199033	ENSMUSG00000042389	Tsen2	AU067695	tRNA splicing endonuclease subunit 2	protein-coding	0.025000	0.507463	
mm_150840.1	chr19	44935348	44935548	+	1	NA	NA	NA	4329	NM_001081225	226151	Mm.212609	NM_172638	ENSMUSG00000036097	Fam178a	3632432H19|6030443O07Rik|AU014917|Slf2	family with sequence similarity 178, member A	protein-coding	0.015000	0.487562	
mm_85338.1	chr9	102626451	102626651	-	1	NA	NA	NA	255	NM_181394	69010	Mm.2000	NM_181394	ENSMUSG00000035048	Anapc13	1810004D07Rik|APC13|SWM1	anaphase promoting complex subunit 13	protein-coding	0.080000	0.621891	
mm_37224.1	chr4	117929371	117929571	-	1	NA	NA	NA	292	NM_001284191	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.070000	0.706468	
mm_95493.1	chr11	51635966	51636166	+	1	NA	NA	NA	-170	NM_025346	66089	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	0.070000	0.587065	
mm_157345.1	chrX	36903401	36903601	-	1	NA	NA	NA	-602	NM_029891	77286	Mm.21649	NM_029891	ENSMUSG00000044149	Nkrf	9430034D17Rik|AW124770|C80287	NF-kappaB repressing factor	protein-coding	0.090000	0.626866	
mm_13075.1	chr2	91202695	91202895	+	1	NA	NA	NA	-117	NM_007387	11432	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.070000	0.582090	
mm_102454.1	chr11	59826861	59827061	-	1	NA	NA	NA	12806	NM_011991	26572	Mm.40	NM_011991	ENSMUSG00000019373	Cops3	Csn3|Sgn3	COP9 signalosome subunit 3	protein-coding	0.010000	0.442786	
mm_79334.1	chr9	53341135	53341335	+	1	NA	NA	NA	39565	NM_176846	320051	Mm.277540	NM_176846	ENSMUSG00000034584	Exph5	AC079869.22gm5|B130009M24Rik|E030050P12|Kiaa0624|Slac2b|slac2-b	exophilin 5	protein-coding	0.030000	0.512438	-53(CCTCTTAAGGTG,+,0.00)
mm_78124.1	chr9	20644758	20644958	+	1	NA	NA	NA	34	NM_001310746	66177	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.075000	0.572139	
mm_1033.1	chr1	58755863	58756063	+	1	NA	NA	NA	25411	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.010000	0.492537	
mm_78794.1	chr9	44046540	44046740	+	1	NA	NA	NA	3256	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.020000	0.567164	
mm_2513.1	chr1	106230754	106230954	+	1	NA	NA	NA	58985	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.000000	0.363184	
mm_10092.1	chr2	3284161	3284361	+	1	NA	NA	NA	49	NM_001290370	18108	Mm.65021	NM_008708	ENSMUSG00000026643	Nmt2	A930001K02Rik|AI605445|AU044698|hNMT-2	N-myristoyltransferase 2	protein-coding	0.125000	0.741294	
mm_24224.1	chr3	88716761	88716961	+	1	NA	NA	NA	7	NM_001163310	19769	Mm.4009	NM_009069	ENSMUSG00000028057	Rit1	RIBB|ROC1|Rit	Ras-like without CAAX 1	protein-coding	0.070000	0.666667	
mm_116654.1	chr13	49187904	49188104	-	1	NA	NA	NA	457	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.055000	0.646766	
mm_171512.1	chr4	146497597	146497797	-	1	NA	NA	NA	-4303	NM_001243138	100041433	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247|OTTMUSG00000011075	zinc finger protein 981	protein-coding	0.045000	0.462687	
mm_99564.1	chr11	103809629	103809829	+	1	NA	NA	NA	35554	NM_009521	22415	Mm.159091	NM_009521	ENSMUSG00000000125	Wnt3	Int-4|Wnt-3	wingless-type MMTV integration site family, member 3	protein-coding	0.040000	0.557214	
mm_124891.1	chr15	10313991	10314191	+	1	NA	NA	NA	20440	NM_001253782	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.010000	0.447761	
mm_169013.1	chr13	107890046	107890246	-	1	NA	NA	NA	-82	NM_145456	67263	Mm.490418	NM_145456	ENSMUSG00000032846	Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.120000	0.676617	46(CCGTTTATAGGG,-,0.00)
mm_69599.1	chr7	135716342	135716542	-	1	NA	NA	NA	-63	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.130000	0.726368	
mm_143441.1	chr17	70853373	70853573	-	1	NA	NA	NA	59	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.070000	0.542289	
mm_116014.1	chr13	24761351	24761551	-	1	NA	NA	NA	486	NM_020567	57441	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.085000	0.656716	
mm_50208.1	chr6	42249744	42249944	+	1	NA	NA	NA	3909	NM_029555	76263	Mm.267014	NM_029555	ENSMUSG00000029864	Gstk1	0610025I19Rik|AW260476|DsbA-L	glutathione S-transferase kappa 1	protein-coding	0.005000	0.467662	
mm_112676.1	chr13	16027743	16027943	+	1	NA	NA	NA	15992	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.462687	
mm_110693.1	chr12	69196962	69197162	-	1	NA	NA	NA	-149	NR_033222	414085	Mm.256223	NR_033222	ENSMUSG00000097061	9330151L19Rik	-	RIKEN cDNA 9330151L19 gene	ncRNA	0.100000	0.666667	
mm_120278.1	chr14	63129294	63129494	+	1	NA	NA	NA	6932	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.005000	0.447761	
mm_86684.1	chr10	18407587	18407787	+	1	NA	NA	NA	12	NM_173390	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.050000	0.542289	
mm_21915.1	chr2	166713638	166713838	-	1	NA	NA	NA	94	NM_177782	277360	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.170000	0.800995	
mm_42245.1	chr5	113843071	113843271	+	1	NA	NA	NA	-12670	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.025000	0.597015	
mm_131535.1	chr16	17759068	17759268	+	1	NA	NA	NA	-453	NM_145479	224023	Mm.282807	NM_145479	ENSMUSG00000022750	Klhl22	2610318I18Rik|Kelchl	kelch-like 22	protein-coding	0.025000	0.472637	
mm_47479.1	chr5	123744996	123745196	-	1	NA	NA	NA	4318	NM_001005525	208606	Mm.276341	NM_025438	ENSMUSG00000029422	Rsrc2	1500011J06Rik	arginine/serine-rich coiled-coil 2	protein-coding	0.010000	0.313433	13(CCCTAGAAAAGA,-,0.00)
mm_42226.1	chr5	113490489	113490689	+	1	NA	NA	NA	-59831	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.100000	0.726368	
mm_143412.1	chr17	70834441	70834641	-	1	NA	NA	NA	12236	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.055000	0.606965	
mm_39003.1	chr4	151988881	151989081	-	1	NA	NA	NA	5	NM_175152	69876	Mm.226820	NM_175152	ENSMUSG00000039759	Thap3	2010013E08Rik|2210418H06Rik	THAP domain containing, apoptosis associated protein 3	protein-coding	0.085000	0.676617	-5(TTTTTTAGGGGC,+,0.00)
mm_50457.1	chr6	48907612	48907812	+	1	NA	NA	NA	2726	NM_001161621	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.025000	0.567164	
mm_79251.1	chr9	50617235	50617435	+	1	NA	NA	NA	14	NM_028300	72614	Mm.147232	NM_028300	ENSMUSG00000000167	Pih1d2	2700059L22Rik	PIH1 domain containing 2	protein-coding	0.120000	0.706468	
mm_6187.1	chr1	65110132	65110332	-	1	NA	NA	NA	-6869	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.005000	0.552239	
mm_150747.1	chr19	43787058	43787258	+	1	NA	NA	NA	4850	NM_013806	12780	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0.000000	0.333333	
mm_158909.1	chr1	39194150	39194350	+	1	NA	NA	NA	-22	NM_008719	18143	Mm.2380	NM_008719	ENSMUSG00000026077	Npas2	MOP4|bHLHe9	neuronal PAS domain protein 2	protein-coding	0.080000	0.706468	
mm_51140.1	chr6	70215303	70215503	+	1	NA	NA	NA	576772	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.010000	0.412935	
mm_111972.1	chr12	110019790	110019990	-	1	NA	NA	NA	138183	NR_045466	67280	Mm.390495	NR_045466		3110009F21Rik	-	RIKEN cDNA 3110009F21 gene	ncRNA	0.015000	0.393035	
mm_170473.1	chr19	11121391	11121591	+	1	NA	NA	NA	9387	NM_027058	69369	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0.065000	0.552239	
mm_95988.1	chr11	59002835	59003035	+	1	NA	NA	NA	24842	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.010000	0.537313	
mm_147967.1	chr18	67242971	67243171	-	1	NA	NA	NA	2759	NM_172630	225651	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	A530095G11	metallophosphoesterase 1	protein-coding	0.005000	0.447761	-34(CTATTTAAAAAG,-,0.00)
mm_77129.1	chr8	111338092	111338292	-	1	NA	NA	NA	13	NM_001310613	74568	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0.060000	0.582090	
mm_110966.1	chr12	76822647	76822847	-	1	NA	NA	NA	-223	NM_134050	104886	Mm.172847	NM_134050	ENSMUSG00000021062	Rab15	2310012G06Rik|AI840042	RAB15, member RAS oncogene family	protein-coding	0.065000	0.626866	
mm_32098.1	chr4	98546701	98546901	+	1	NA	NA	NA	167	NM_001005787	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.015000	0.482587	39(GCCCTTTAAAAG,-,0.00),40(CCCTTTAAAAGA,-,0.00),41(CCTTTAAAAGAA,+,0.00)
mm_93982.1	chr10	127351712	127351912	-	1	NA	NA	NA	36	NM_008382	16326	Mm.3510	NM_008382	ENSMUSG00000047492	Inhbe	-	inhibin beta-E	protein-coding	0.015000	0.542289	-27(GGCTCTAAAGAG,-,0.00)
mm_27815.1	chr3	78627348	78627548	-	1	NA	NA	NA	517439	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.378109	-88(GGCTTTAAGAGG,-,0.00),-87(GCTTTAAGAGGT,+,0.00),68(TCTTTTATAAAG,+,0.00)
mm_139318.1	chr17	48410055	48410255	+	1	NA	NA	NA	155	NM_207219	106821	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	0.095000	0.611940	
mm_162509.1	chr1	152400622	152400822	-	1	NA	NA	NA	855	NM_177756	269132	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0.010000	0.497512	
mm_51165.1	chr6	70726401	70726601	+	1	NA	NA	NA	65674	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.487562	
mm_95923.1	chr11	58286347	58286547	+	1	NA	NA	NA	-20622	NM_182996	103836	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	0.015000	0.522388	
mm_102508.1	chr11	60727171	60727371	-	1	NA	NA	NA	-8	NM_001302207	14248	Mm.339755	NM_022009	ENSMUSG00000002812	Flii	3632430F08Rik|Fliih	flightless I actin binding protein	protein-coding	0.115000	0.756219	
mm_36461.1	chr4	82505676	82505876	-	1	NA	NA	NA	3	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.040000	0.487562	
mm_128652.1	chr15	59650509	59650709	-	1	NA	NA	NA	1955	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.030000	0.522388	
mm_100366.1	chr11	119053493	119053693	+	1	NA	NA	NA	-12680	NM_013926	30951	Mm.99953	NM_013926	ENSMUSG00000025578	Cbx8	Pc3	chromobox 8	protein-coding	0.070000	0.641791	
mm_2282.1	chr1	91322010	91322210	+	1	NA	NA	NA	35	NM_001033292	227357	Mm.318167	NM_001033292	ENSMUSG00000049515	Espnl	Gm556	espin-like	protein-coding	0.035000	0.606965	81(GGCTATTTGAGG,-,0.00)
mm_142076.1	chr17	35701910	35702110	-	1	NA	NA	NA	34	NM_001198831	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.025000	0.606965	
mm_164245.1	chr15	95704997	95705197	+	1	NA	NA	NA	46494	NR_131148	629300	Mm.247258	NR_131148		Gm6961	EG629300	predicted gene 6961	ncRNA	0.015000	0.442786	
mm_131350.1	chr16	13671939	13672139	+	1	NA	NA	NA	181	NM_025653	67118	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	0.070000	0.626866	
mm_8410.1	chr1	152042583	152042783	-	1	NA	NA	NA	47637	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik|ENSMUSG00000073540	RIKEN cDNA 1700025G04 gene	protein-coding	0.015000	0.497512	
mm_73592.1	chr8	109996001	109996201	+	1	NA	NA	NA	5665	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.015000	0.557214	
mm_85428.1	chr9	103500278	103500478	-	1	NA	NA	NA	-20050	NM_001002896	107993	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding	0.015000	0.542289	
mm_99005.1	chr11	98809699	98809899	+	1	NA	NA	NA	-9	NM_138660	192160	Mm.40120	NM_138660	ENSMUSG00000078676	Casc3	Btz|Mln51	cancer susceptibility candidate 3	protein-coding	0.125000	0.711443	
mm_17367.1	chr2	26902768	26902968	-	1	NA	NA	NA	19	NM_009298	20935	Mm.245577	NM_009298	ENSMUSG00000036160	Surf6	D2Wsu129e|Surf-6	surfeit gene 6	protein-coding	0.070000	0.616915	
mm_117278.1	chr13	65112875	65113075	-	1	NA	NA	NA	7	NM_001083901	66631	Mm.239196	NM_133680	ENSMUSG00000038212	Mfsd14b	5730414C17Rik|AU045608|AW539692|Hiatl1	major facilitator superfamily domain containing 14B	protein-coding	0.075000	0.587065	
mm_122974.1	chr14	54975893	54976093	-	1	NA	NA	NA	-217	NR_030607	100124433		NR_030607	ENSMUSG00000077928	Mir208b	Mirn208b|mir-208b	microRNA 208b	ncRNA	0.030000	0.582090	
mm_109620.1	chr12	112764404	112764604	+	1	NA	NA	NA	3849	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.000000	0.572139	
mm_66988.1	chr7	64001681	64001881	-	1	NA	NA	NA	-62866	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.020000	0.482587	
mm_146688.1	chr18	12862569	12862769	-	1	NA	NA	NA	44	NM_001252493	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.030000	0.577114	-70(CCGTTTAAAAGT,-,0.00)
mm_153550.1	chr19	42089187	42089387	-	1	NA	NA	NA	-1148	NM_145501	84095	Mm.117037	NM_145501	ENSMUSG00000025178	Pi4k2a	Pi4k2	phosphatidylinositol 4-kinase type 2 alpha	protein-coding	0.040000	0.567164	
mm_113804.1	chr13	46501807	46502007	+	1	NA	NA	NA	4	NM_026056	67252	Mm.44529	NM_026056	ENSMUSG00000021373	Cap2	2810452G09Rik|AV045235	CAP, adenylate cyclase-associated protein, 2 (yeast)	protein-coding	0.045000	0.621891	
mm_23319.1	chr3	53463482	53463682	+	1	NA	NA	NA	-235	NM_173382	212127	Mm.491292	NM_173382	ENSMUSG00000049504	Proser1	2810046L04Rik|9330161F11	proline and serine rich 1	protein-coding	0.060000	0.592040	85(GGGCATTTAGGG,-,0.00)
mm_126927.1	chr15	91673127	91673327	+	1	NA	NA	NA	3	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.095000	0.746269	
mm_74098.1	chr8	122611541	122611741	+	1	NA	NA	NA	15	NM_021502	59005	Mm.38746	NM_021502	ENSMUSG00000015013	Trappc2l	1810017G16Rik|AB030200|Hspc176|Tca17	trafficking protein particle complex 2-like	protein-coding	0.100000	0.706468	
mm_113677.1	chr13	42784979	42785179	+	1	NA	NA	NA	75498	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.015000	0.432836	
mm_122244.1	chr14	33447061	33447261	-	1	NA	NA	NA	-3	NM_016700	26419	Mm.21495	NM_016700	ENSMUSG00000021936	Mapk8	AI849689|JNK|JNK1|Prkm8|SAPK1	mitogen-activated protein kinase 8	protein-coding	0.180000	0.771144	
mm_158000.1	chrX	94541968	94542168	-	1	NA	NA	NA	6	NM_019791	94275	Mm.27578	NM_019791	ENSMUSG00000025151	Maged1	2810433C11Rik|5430405L04Rik|DXBwg1492e|Dlixin|Dlxin-1|Dlxin1|MAGE-D1|NRAGE|mFLJ00163	melanoma antigen, family D, 1	protein-coding	0.095000	0.621891	
mm_64938.1	chr7	16309985	16310185	-	1	NA	NA	NA	502	NM_133234	170770	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.070000	0.681592	
mm_111318.1	chr12	86042698	86042898	-	1	NA	NA	NA	36243	NM_009368	21809	Mm.3992	NM_009368	ENSMUSG00000021253	Tgfb3	TGF-beta-3|Tgfb-3	transforming growth factor, beta 3	protein-coding	0.005000	0.527363	
mm_3132.1	chr1	135108838	135109038	+	1	NA	NA	NA	-3662	NM_001033409	329252	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0.015000	0.562189	-11(GGGTCTTAAGGC,-,0.00)
mm_44086.1	chr5	149184561	149184761	+	1	NA	NA	NA	101	NM_001115149	231915	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	0.070000	0.646766	
mm_94605.1	chr11	14599142	14599342	+	1	NA	NA	NA	2	NM_001164166	432536	Mm.33646	NM_001164166	ENSMUSG00000084135	Pom121l12	1700054H16Rik	POM121 membrane glycoprotein-like 12	protein-coding	0.035000	0.577114	
mm_134249.1	chr16	13611651	13611851	-	1	NA	NA	NA	56419	NM_028761	74108	Mm.182350	NM_028761	ENSMUSG00000022685	Parn	1200003I18Rik|DAN	poly(A)-specific ribonuclease (deadenylation nuclease)	protein-coding	0.005000	0.398010	
mm_110048.1	chr12	17715742	17715942	-	1	NA	NA	NA	25028	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.010000	0.512438	
mm_20072.1	chr2	120539390	120539590	-	1	NA	NA	NA	24341	NM_011743	20402	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|H3a|Sh3bp3|Znf106|sirm	zinc finger protein 106	protein-coding	0.010000	0.497512	
mm_136797.1	chr17	12119256	12119456	+	1	NA	NA	NA	72	NM_026644	68262	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.030000	0.547264	
mm_109832.1	chr12	4038774	4038974	-	1	NA	NA	NA	41	NM_001082483	668212	Mm.210266	NM_001082483	ENSMUSG00000020658	Efr3b	AI852640|C030014M07Rik|mKIAA0953	EFR3 homolog B	protein-coding	0.130000	0.756219	
mm_10899.1	chr2	25272402	25272602	+	1	NA	NA	NA	36	NM_175300	99152	Mm.291624	NM_175300	ENSMUSG00000026965	Anapc2	9230107K09Rik|AL024279|Apc2|Emi4|Imi4|mKIAA1406	anaphase promoting complex subunit 2	protein-coding	0.140000	0.691542	
mm_166867.1	chr7	24636514	24636714	+	1	NA	NA	NA	44	NM_133743	72434	Mm.281093	NM_133743	ENSMUSG00000057454	Lypd3	2310061G07Rik|C4.4a	Ly6/Plaur domain containing 3	protein-coding	0.035000	0.621891	
mm_163406.1	chr12	75529164	75529364	+	1	NA	NA	NA	66936	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|AI449017|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.010000	0.447761	
mm_57795.1	chr6	129275336	129275536	-	1	NA	NA	NA	-67	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.030000	0.502488	33(GAGTATAAAGGC,-,0.00)
mm_119900.1	chr14	54944206	54944406	+	1	NA	NA	NA	4836	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.040000	0.616915	-71(GGCTTGTAAAGC,-,0.00)
mm_20106.1	chr2	121101063	121101263	-	1	NA	NA	NA	8628	NM_001160424	640543	Mm.478785	NM_001160424	ENSMUSG00000079103	Tgm7	TGMZ|TGz	transglutaminase 7	protein-coding	0.025000	0.492537	
mm_67641.1	chr7	84439091	84439291	-	1	NA	NA	NA	-29153	NM_007488	11864	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding	0.010000	0.497512	
mm_3294.1	chr1	136683293	136683493	+	1	NA	NA	NA	-3	NR_045324	100503460	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.010000	0.432836	70(GCACTTTTAAGG,-,0.00)
mm_88349.1	chr10	75842440	75842640	+	1	NA	NA	NA	-7659	NM_010361	14872	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.020000	0.487562	-61(CTTTTTATGAGG,+,0.00)
mm_29346.1	chr3	108284465	108284665	-	1	NA	NA	NA	501	NM_019972	20661	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0.140000	0.746269	
mm_168628.1	chr1	180936899	180937099	+	1	NA	NA	NA	1977	NM_010094	13590	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	0.070000	0.656716	
mm_35916.1	chr4	53029023	53029223	-	1	NA	NA	NA	17243	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.020000	0.507463	
mm_96762.1	chr11	69914192	69914392	+	1	NA	NA	NA	100	NM_019726	56310	Mm.477738	NM_019726	ENSMUSG00000023170	Gps2	AI505953	G protein pathway suppressor 2	protein-coding	0.085000	0.661692	
mm_32111.1	chr4	98923729	98923929	+	1	NA	NA	NA	19	NM_146144	230484	Mm.371692	NM_146144	ENSMUSG00000028560	Usp1	-	ubiquitin specific peptidase 1	protein-coding	0.145000	0.716418	
mm_40384.1	chr5	52369004	52369204	+	1	NA	NA	NA	5300	NM_011435	20657	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	0.010000	0.522388	
mm_5405.1	chr1	33757834	33758034	-	1	NA	NA	NA	-184	NM_145392	213539	Mm.247037	NM_145392	ENSMUSG00000042215	Bag2	2610042A13Rik|BC016230	BCL2-associated athanogene 2	protein-coding	0.080000	0.696517	
mm_81112.1	chr9	106453796	106453996	+	1	NA	NA	NA	58	NM_021567	59092	Mm.286394	NM_021567	ENSMUSG00000023495	Pcbp4	1200003L19Rik|AlphaCP-4	poly(rC) binding protein 4	protein-coding	0.115000	0.766169	
mm_132921.1	chr16	49781718	49781918	+	1	NA	NA	NA	-73836	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.010000	0.482587	
mm_112064.1	chr12	111980045	111980245	-	1	NA	NA	NA	606	NM_001127685	217874	Mm.134213	NM_001127685	ENSMUSG00000091402	Rd3l	A930011N13	retinal degeneration 3-like	protein-coding	0.030000	0.442786	
mm_31269.1	chr4	45331831	45332031	+	1	NA	NA	NA	-10170	NM_153167	242418	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	0.025000	0.492537	
mm_53062.1	chr6	124857053	124857253	+	1	NA	NA	NA	534	NM_013534	14789	Mm.9002	NM_013534	ENSMUSG00000023191	P3h3	BC016431|Grcb|Leprel2	prolyl 3-hydroxylase 3	protein-coding	0.065000	0.656716	
mm_108597.1	chr12	85389355	85389555	+	1	NA	NA	NA	-14738	NM_026775	68581	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.010000	0.512438	-35(AGGCCTATAAGG,-,0.00)
mm_119361.1	chr14	41116098	41116298	+	1	NA	NA	NA	11165	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.000000	0.378109	58(GCCTTTATGAGC,-,0.00)
mm_117837.1	chr13	98688366	98688566	-	1	NA	NA	NA	6365	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.020000	0.507463	-99(GGCCTTTTATGG,-,0.00),-97(CCTTTTATGGGG,+,0.00)
mm_144477.1	chr18	23943752	23943952	+	1	NA	NA	NA	-10836	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.015000	0.427861	
mm_63612.1	chr7	128205808	128206008	+	1	NA	NA	NA	458	NM_009943	12862	Mm.43824	NM_009943	ENSMUSG00000030785	Cox6a2	CoxVIaH|VIaH	cytochrome c oxidase subunit VIa polypeptide 2	protein-coding	0.055000	0.626866	
mm_7703.1	chr1	130422974	130423174	-	1	NA	NA	NA	-31	NM_001317361	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	0.040000	0.611940	
mm_11708.1	chr2	36222372	36222572	+	1	NA	NA	NA	-7954	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.005000	0.492537	-85(GCCCATTAAGGC,-,0.00)
mm_75952.1	chr8	71671648	71671848	-	1	NA	NA	NA	9	NM_001029873	382018	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.150000	0.756219	-84(AGCCCTTTAAGG,-,0.00),-83(GCCCTTTAAGGC,-,0.00),-82(CCCTTTAAGGCG,+,0.00)
mm_37293.1	chr4	119187226	119187426	-	1	NA	NA	NA	2685	NM_013848	27028	Mm.290753	NM_013848	ENSMUSG00000028644	Ermap	AA409279|AI666418	erythroblast membrane-associated protein	protein-coding	0.040000	0.592040	-82(CCTCTTAGGGAC,+,0.00)
mm_77739.1	chr8	126944877	126945077	-	1	NA	NA	NA	944	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.050000	0.572139	
mm_116755.1	chr13	52530578	52530778	-	1	NA	NA	NA	158	NM_001024474	68203	Mm.29362	NM_001024474	ENSMUSG00000047842	Diras2	2900052J15Rik|AI414999	DIRAS family, GTP-binding RAS-like 2	protein-coding	0.060000	0.676617	
mm_157665.1	chrX	58039674	58039874	-	1	NA	NA	NA	9146	NM_009575	22773	Mm.255890	NM_009575	ENSMUSG00000067860	Zic3	Bn|Ka	zinc finger protein of the cerebellum 3	protein-coding	0.015000	0.522388	86(CCTTTTAAGATG,+,0.00)
mm_160948.1	chr11	96365804	96366004	+	1	NA	NA	NA	146	NM_008266	15407	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0.055000	0.592040	-54(CTTTTTAGAGTA,+,0.00)
mm_75026.1	chr8	31918723	31918923	-	1	NA	NA	NA	-620	NM_178591	211323	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding	0.045000	0.621891	
mm_158678.1	chrX	159257128	159257328	-	1	NA	NA	NA	1446	NM_001346675	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	0.045000	0.512438	
mm_79434.1	chr9	56041922	56042122	+	1	NA	NA	NA	177	NM_011992	26611	Mm.1782	NM_011992	ENSMUSG00000032320	Rcn2	AA408742|Tcbp49	reticulocalbin 2	protein-coding	0.115000	0.751244	
mm_67912.1	chr7	99706750	99706950	-	1	NA	NA	NA	-8	NM_001252530	101488	Mm.11249	NM_175316	ENSMUSG00000030737	Slco2b1	AI060904|AI852653|OATP-B|Slc21a9	solute carrier organic anion transporter family, member 2b1	protein-coding	0.005000	0.532338	
mm_51822.1	chr6	89096076	89096276	+	1	NA	NA	NA	66	NR_134977	232217	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	0.030000	0.537313	
mm_89604.1	chr10	95991515	95991715	+	1	NA	NA	NA	50952	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.000000	0.417910	
mm_168280.1	chr1	107794064	107794264	+	1	NA	NA	NA	-123095	NR_102306	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	0.015000	0.482587	
mm_171358.1	chr4	116074970	116075170	-	1	NA	NA	NA	0	NM_025641	66576	Mm.181721	NM_025641	ENSMUSG00000063882	Uqcrh	2210416J04Rik|2310021J10Rik|2610041P16Rik	ubiquinol-cytochrome c reductase hinge protein	protein-coding	0.080000	0.552239	
mm_2100.1	chr1	87803550	87803750	+	1	NA	NA	NA	-30	NM_009118	20215	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	0.010000	0.427861	
mm_46808.1	chr5	113077113	113077313	-	1	NA	NA	NA	4371	NM_001159650	12962	Mm.378899	NM_021352	ENSMUSG00000029352	Crybb3	AI852419	crystallin, beta B3	protein-coding	0.020000	0.537313	
mm_56567.1	chr6	102265598	102265798	-	1	NA	NA	NA	-402	NR_131018	75893	Mm.2968	NR_131017	ENSMUSG00000107563	4930587E11Rik	4930523E13Rik	RIKEN cDNA 4930587E11 gene	ncRNA	0.000000	0.407960	
mm_117630.1	chr13	92131704	92131904	-	1	NA	NA	NA	-143762	NM_009027	19418	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0.100000	0.661692	
mm_100348.1	chr11	118428120	118428320	+	1	NA	NA	NA	-237	NM_001204129	56745	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.015000	0.542289	
mm_30760.1	chr4	15284297	15284497	+	1	NA	NA	NA	18577	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.005000	0.378109	-93(GCTTTAAAACTA,+,0.00)
mm_67894.1	chr7	99482229	99482429	-	1	NA	NA	NA	603	NR_002172	449630	Mm.454449	NR_002172	ENSMUSG00000065822	Snord15a	EG449630|Gm5774|RNU15A|Rnu15-a|U15A	small nucleolar RNA, C/D box 15A	snoRNA	0.050000	0.547264	
mm_99547.1	chr11	103355601	103355801	+	1	NA	NA	NA	7991	NM_183288	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.010000	0.572139	27(GCTTTAAGACTG,+,0.00)
mm_136178.1	chr16	88869347	88869547	-	1	NA	NA	NA	-37	NM_130876	170657	Mm.196822	NM_130876	ENSMUSG00000060691	Krtap19-1	Krtap16-2|Krtap16-9	keratin associated protein 19-1	protein-coding	0.030000	0.462687	-34(GAGTATATAAGC,-,0.00)
mm_6721.1	chr1	82506441	82506641	-	1	NA	NA	NA	80308	NM_007735	12829	Mm.40253	NM_007735	ENSMUSG00000067158	Col4a4	E130010M05Rik|[a]4(IV)	collagen, type IV, alpha 4	protein-coding	0.020000	0.472637	
mm_98315.1	chr11	90187604	90187804	+	1	NA	NA	NA	-61772	NM_026178	67468	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.025000	0.487562	
mm_101702.1	chr11	40755355	40755555	-	1	NA	NA	NA	-169	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.040000	0.527363	
mm_117525.1	chr13	81657041	81657241	-	1	NA	NA	NA	-665	NM_030257	80289	Mm.259969	NM_030257	ENSMUSG00000035840	Lysmd3	1110030H10Rik|BC003322	LysM, putative peptidoglycan-binding, domain containing 3	protein-coding	0.025000	0.338308	
mm_43975.1	chr5	146231143	146231343	+	1	NA	NA	NA	-432	NM_153599	264064	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.100000	0.651741	
mm_44479.1	chr5	23434130	23434330	-	1	NA	NA	NA	123	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.085000	0.636816	
mm_54450.1	chr6	34746049	34746249	-	1	NA	NA	NA	-34283	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.020000	0.507463	
mm_76092.1	chr8	79711525	79711725	-	1	NA	NA	NA	115	NM_015751	24015	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	0.115000	0.656716	
mm_144365.1	chr18	20436076	20436276	+	1	NA	NA	NA	1	NM_181564	16769	Mm.358619	NM_181564	ENSMUSG00000001804	Dsg4	CDHF13|lah	desmoglein 4	protein-coding	0.005000	0.527363	
mm_35944.1	chr4	53109221	53109421	-	1	NA	NA	NA	50574	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.010000	0.373134	
mm_113427.1	chr13	34162893	34163093	+	1	NA	NA	NA	29	NM_001110515	69666	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.090000	0.686567	
mm_35740.1	chr4	45320507	45320707	-	1	NA	NA	NA	-4	NM_025513	66362	Mm.275788	NM_025513	ENSMUSG00000028322	Exosc3	2310005D06Rik|AI593501|Rrp40	exosome component 3	protein-coding	0.075000	0.616915	
mm_36147.1	chr4	59474789	59474989	-	1	NA	NA	NA	-36256	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.005000	0.412935	
mm_132687.1	chr16	43176700	43176900	+	1	NA	NA	NA	-70484	NM_181058	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.000000	0.353234	
mm_139860.1	chr17	69969314	69969514	+	1	NA	NA	NA	341	NM_001347411	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.155000	0.776119	
mm_143254.1	chr17	65540660	65540860	-	1	NA	NA	NA	22	NM_001008973	381107	Mm.141275	NM_001008973	ENSMUSG00000045036	Tmem232	E130009J12Rik|Gm940|Tes13-L|Tes13-S	transmembrane protein 232	protein-coding	0.045000	0.567164	
mm_33861.1	chr4	135911767	135911967	+	1	NA	NA	NA	187	NM_001305278	12802	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0.015000	0.512438	
mm_161662.1	chr17	8242405	8242605	+	1	NA	NA	NA	-21	NM_009835	12458	Mm.8007	NM_009835	ENSMUSG00000040899	Ccr6	CC-CKR-6|CCR-6|Cmkbr6|KY411	chemokine (C-C motif) receptor 6	protein-coding	0.020000	0.482587	
mm_95903.1	chr11	58202522	58202722	+	1	NA	NA	NA	3066	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.010000	0.427861	
mm_55021.1	chr6	48841019	48841219	-	1	NA	NA	NA	18	NM_001286652	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.000000	0.587065	
mm_109997.1	chr12	15815916	15816116	-	1	NA	NA	NA	769	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.090000	0.616915	
mm_80815.1	chr9	96537183	96537383	+	1	NA	NA	NA	-58608	NM_001311135	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.035000	0.532338	
mm_30913.1	chr4	32615348	32615548	+	1	NA	NA	NA	-22	NM_001122978	26885	Mm.22279	NM_011997	ENSMUSG00000028282	Casp8ap2	D4Ertd659e|FLASH	caspase 8 associated protein 2	protein-coding	0.125000	0.706468	
mm_72927.1	chr8	91106479	91106679	+	1	NA	NA	NA	27448	NM_001302337	14339	Mm.324588	NM_010241	ENSMUSG00000031667	Aktip	AL023020|Fif|Ft|Ft1|Fts	thymoma viral proto-oncogene 1 interacting protein	protein-coding	0.025000	0.477612	
mm_12495.1	chr2	71787024	71787224	+	1	NA	NA	NA	185	NM_001277970	16403	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	0.130000	0.771144	
mm_154257.1	chr19	60767532	60767732	-	1	NA	NA	NA	6753	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.005000	0.437811	
mm_144263.1	chr18	11052553	11052753	+	1	NA	NA	NA	-86	NR_105023	68434	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0.110000	0.646766	
mm_128995.1	chr15	74838979	74839179	-	1	NA	NA	NA	2564	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.010000	0.532338	
mm_109362.1	chr12	109636133	109636333	+	1	NA	NA	NA	221	NR_046302	449562		NR_046302	ENSMUSG00000088294	AF357425	MBII-48	snoRNA AF357425	snoRNA	0.010000	0.308458	
mm_83871.1	chr9	55026470	55026670	-	1	NA	NA	NA	-11	NM_145129	110834	Mm.63569	NM_145129	ENSMUSG00000032303	Chrna3	(a)3|A730007P14Rik|Acra-3|Acra3	cholinergic receptor, nicotinic, alpha polypeptide 3	protein-coding	0.130000	0.736318	
mm_97361.1	chr11	77505454	77505654	+	1	NA	NA	NA	7719	NM_001024920	216964	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	0.025000	0.601990	
mm_166187.1	chr5	33018553	33018753	-	1	NA	NA	NA	-163	NM_011738	22629	Mm.332314	NM_011738	ENSMUSG00000018965	Ywhah	-	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide	protein-coding	0.100000	0.646766	-86(GTCTTTTTAAGG,-,0.00),-84(CTTTTTAAGGTG,+,0.00),-62(CTATAAATAGCC,+,0.00)
mm_59341.1	chr7	25474660	25474860	+	1	NA	NA	NA	2865	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.015000	0.437811	
mm_28432.1	chr3	90465717	90465917	-	1	NA	NA	NA	49	NM_008727	18160	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.100000	0.671642	
mm_64451.1	chr7	142658927	142659127	+	1	NA	NA	NA	-223	NM_010514	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.085000	0.676617	
mm_78641.1	chr9	40269301	40269501	+	1	NA	NA	NA	185	NM_178227	235281	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.070000	0.651741	
mm_151308.1	chr19	55743051	55743251	+	1	NA	NA	NA	1341	NM_001142923	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.100000	0.696517	-57(GGCTCTTTAAGG,-,0.00),-55(CTCTTTAAGGGG,+,0.00),-54(TCTTTAAGGGGC,+,0.00)
mm_161420.1	chr15	36179232	36179432	+	1	NA	NA	NA	-198	NM_012031	26942	Mm.295539	NM_012031	ENSMUSG00000037617	Spag1	tpis	sperm associated antigen 1	protein-coding	0.090000	0.666667	
mm_139649.1	chr17	57386616	57386816	+	1	NA	NA	NA	28030	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.248756	
mm_16053.1	chr2	167773055	167773255	+	1	NA	NA	NA	81978	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.020000	0.487562	
mm_44326.1	chr5	9725728	9725928	-	1	NA	NA	NA	-476	NM_181850	108069	Mm.318966	NM_181850	ENSMUSG00000003974	Grm3	0710001G23Rik|Gprc1c|mGlu3|mGluR3	glutamate receptor, metabotropic 3	protein-coding	0.025000	0.537313	
mm_155872.1	chrX	101396411	101396611	+	1	NA	NA	NA	12779	NM_001302497	14618	Mm.21198	NM_008124	ENSMUSG00000047797	Gjb1	Cnx32|Cx32|connexin-32	gap junction protein, beta 1	protein-coding	0.040000	0.532338	-14(CCTCTTAAGGTC,+,0.00)
mm_85680.1	chr9	107872313	107872513	-	1	NA	NA	NA	406	NM_011251	19654	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	0.140000	0.716418	
mm_43207.1	chr5	129174199	129174399	+	1	NA	NA	NA	77549	NM_001347486	243277	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding	0.020000	0.442786	
mm_52734.1	chr6	120405122	120405322	+	1	NA	NA	NA	-40853	NR_045558	67200	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	0.000000	0.373134	
mm_55929.1	chr6	84587901	84588101	-	1	NA	NA	NA	5809	NM_175475	232174	Mm.255246	NM_175475	ENSMUSG00000063415	Cyp26b1	CP26|P450RAI-2	cytochrome P450, family 26, subfamily b, polypeptide 1	protein-coding	0.080000	0.701493	
mm_172782.1	chr8	98892154	98892354	+	1	NA	NA	NA	-119633	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA	0.035000	0.492537	-40(GGGTATTTATGG,-,0.00)
mm_115385.1	chr13	113209393	113209593	+	1	NA	NA	NA	-166	NM_023612	71690	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.010000	0.452736	
mm_143298.1	chr17	65951078	65951278	-	1	NA	NA	NA	9	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.135000	0.810945	
mm_72580.1	chr8	84200839	84201039	+	1	NA	NA	NA	-7579	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.155000	0.776119	
mm_98350.1	chr11	93401524	93401724	+	1	NA	NA	NA	302334	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	0.005000	0.472637	
mm_108472.1	chr12	83646073	83646273	+	1	NA	NA	NA	13939	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.005000	0.373134	
mm_65758.1	chr7	28629697	28629897	-	1	NA	NA	NA	1218	NM_175319	101744	Mm.26022	NM_175319	ENSMUSG00000037469	Acp7	AU017076|C330005M16Rik|Papl	acid phosphatase 7, tartrate resistant	protein-coding	0.015000	0.502488	
mm_159557.1	chr4	107580885	107581085	+	1	NA	NA	NA	103177	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.035000	0.587065	
mm_30420.1	chr3	152266061	152266261	-	1	NA	NA	NA	159	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.045000	0.522388	
mm_1050.1	chr1	58802479	58802679	+	1	NA	NA	NA	77	NM_001080126	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.005000	0.582090	
mm_154566.1	chrX	6415642	6415842	+	1	NA	NA	NA	0	NM_001313764	208431	Mm.23208	NM_001040459	ENSMUSG00000068270	Shroom4	D430043L16Rik|Gm724|Shrm4	shroom family member 4	protein-coding	0.030000	0.512438	-34(GTGTTTAAAGAG,-,0.00),-32(GTTTAAAGAGCC,+,0.00)
mm_54554.1	chr6	37145878	37146078	-	1	NA	NA	NA	153998	NM_001081206	320127	Mm.119469	NM_001081206	ENSMUSG00000038665	Dgki	C130010K08Rik	diacylglycerol kinase, iota	protein-coding	0.000000	0.328358	
mm_148753.1	chr19	6058070	6058270	+	1	NA	NA	NA	203	NM_001190436	14109	Mm.329631	NM_007990	ENSMUSG00000038274	Fau	MNSFbeta	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	protein-coding	0.080000	0.616915	
mm_84626.1	chr9	70657055	70657255	-	1	NA	NA	NA	19	NM_172772	235461	Mm.170855	NM_172772	ENSMUSG00000042444	Fam63b	AI465301|B230380D07Rik|mKIAA1164	family with sequence similarity 63, member B	protein-coding	0.150000	0.746269	
mm_162386.1	chr1	74541363	74541563	+	1	NA	NA	NA	-1426	NM_001081456	18802	Mm.290731	NM_148937	ENSMUSG00000026173	Plcd4	4921507K24Rik	phospholipase C, delta 4	protein-coding	0.025000	0.517413	
mm_72611.1	chr8	84597814	84598014	+	1	NA	NA	NA	64938	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.010000	0.452736	
mm_137853.1	chr17	31104012	31104212	+	1	NA	NA	NA	25499	NM_011575	21786	Mm.4641	NM_011575	ENSMUSG00000024029	Tff3	ITF|mITF	trefoil factor 3, intestinal	protein-coding	0.030000	0.582090	
mm_169743.1	chr15	86195026	86195226	+	1	NA	NA	NA	-8985	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.075000	0.527363	46(AACTTTAAATGG,-,0.00)
mm_70618.1	chr8	13483609	13483809	+	1	NA	NA	NA	10826	NM_019521	14456	Mm.3982	NM_019521	ENSMUSG00000031451	Gas6	Gas-6	growth arrest specific 6	protein-coding	0.005000	0.502488	
mm_160414.1	chr8	79118131	79118331	+	1	NA	NA	NA	89794	NM_178267	622675	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.040000	0.547264	54(ACTTTAATGGGG,+,0.00)
mm_89530.1	chr10	94498820	94499020	+	1	NA	NA	NA	-15937	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.000000	0.482587	
mm_13717.1	chr2	117181166	117181366	+	1	NA	NA	NA	-3861	NR_030440	732489		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.020000	0.442786	
mm_116401.1	chr13	41359779	41359979	-	1	NA	NA	NA	-878	NM_017464	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.025000	0.407960	
mm_89484.1	chr10	93640949	93641149	+	1	NA	NA	NA	0	NM_021320	57764	Mm.483868	NM_021320	ENSMUSG00000020019	Ntn4	-	netrin 4	protein-coding	0.090000	0.671642	
mm_42156.1	chr5	112156137	112156337	+	1	NA	NA	NA	-50526	NR_045377	75569	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	0.005000	0.572139	
mm_152483.1	chr19	11049317	11049517	-	1	NA	NA	NA	1149	NR_102366	107350	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.005000	0.338308	
mm_38748.1	chr4	145276580	145276780	-	1	NA	NA	NA	-29810	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.010000	0.522388	
mm_36621.1	chr4	91363780	91363980	-	1	NA	NA	NA	8175	NM_010486	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding	0.005000	0.437811	
mm_96155.1	chr11	61485622	61485822	+	1	NA	NA	NA	278	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.020000	0.646766	
mm_85747.1	chr9	108578566	108578766	-	1	NA	NA	NA	4	NM_031392	83669	Mm.335454	NM_031392	ENSMUSG00000066357	Wdr6	mWDR6	WD repeat domain 6	protein-coding	0.085000	0.636816	
mm_112720.1	chr13	19190769	19190969	+	1	NA	NA	NA	204944	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.402985	
mm_13867.1	chr2	119799483	119799683	+	1	NA	NA	NA	69	NM_019392	22174	Mm.2901	NM_019392	ENSMUSG00000027298	Tyro3	AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1	TYRO3 protein tyrosine kinase 3	protein-coding	0.160000	0.800995	
mm_79716.1	chr9	61373529	61373729	+	1	NA	NA	NA	1263	NM_001083927	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.090000	0.656716	
mm_158510.1	chrX	142966622	142966822	-	1	NA	NA	NA	6	NM_019496	56068	Mm.143724	NM_019496	ENSMUSG00000042225	Ammecr1	6230420G18Rik	Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1	protein-coding	0.110000	0.731343	
mm_118245.1	chr13	111808878	111809078	-	1	NA	NA	NA	5	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.200000	0.820896	
mm_166241.1	chr5	74008935	74009135	-	1	NA	NA	NA	59376	NM_177561	69727	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.005000	0.368159	
mm_29634.1	chr3	121787713	121787913	-	1	NA	NA	NA	27402	NM_008991	19299	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.005000	0.288557	82(AGCTTTTTAAAG,-,0.00),84(CTTTTTAAAGAC,+,0.00)
mm_20206.1	chr2	125397727	125397927	-	1	NA	NA	NA	108611	NM_007993	14118	Mm.271644	NM_007993	ENSMUSG00000027204	Fbn1	AI536462|B430209H23|Fib-1|Tsk	fibrillin 1	protein-coding	0.020000	0.467662	
mm_37241.1	chr4	118134816	118135016	-	1	NA	NA	NA	30	NM_001285520	20441	Mm.251002	NM_009176	ENSMUSG00000028538	St3gal3	ST3GalIII|ST3N|Siat3|Siat6	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	protein-coding	0.120000	0.761194	
mm_47315.1	chr5	122459449	122459649	-	1	NA	NA	NA	37105	NM_019805	56317	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0.025000	0.542289	
mm_34540.1	chr4	149518042	149518242	+	1	NA	NA	NA	-99	NM_023465	67087	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0.105000	0.736318	
mm_49835.1	chr6	37870905	37871105	+	1	NA	NA	NA	194	NM_145076	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.185000	0.786070	
mm_134285.1	chr16	14212454	14212654	-	1	NA	NA	NA	49279	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.025000	0.587065	
mm_49093.1	chr6	7562254	7562454	+	1	NA	NA	NA	7283	NM_009311	21333	Mm.1440	NM_009311	ENSMUSG00000061762	Tac1	4930528L02Rik|NK-1|NK1|Nkna|PPT-A|PPTA|SP	tachykinin 1	protein-coding	0.025000	0.402985	
mm_22156.1	chr2	172806729	172806929	-	1	NA	NA	NA	133492	NM_007557	12162	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	0.020000	0.557214	
mm_30756.1	chr4	15265704	15265904	+	1	NA	NA	NA	-16	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.140000	0.776119	
mm_161330.1	chr14	50452977	50453177	+	1	NA	NA	NA	23	NM_146667	258661	Mm.377624	NM_146667	ENSMUSG00000095917	Olfr740	MOR106-4	olfactory receptor 740	protein-coding	0.000000	0.482587	
mm_165654.1	chr3	84155427	84155627	+	1	NA	NA	NA	259	NM_029797	76915	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	0.120000	0.721393	
mm_40406.1	chr5	53049255	53049455	+	1	NA	NA	NA	2	NM_011402	20531	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	0.085000	0.631841	
mm_37442.1	chr4	123323499	123323699	-	1	NA	NA	NA	80	NM_022033	64059	Mm.270287	NM_022033	ENSMUSG00000076436	Oxct2a	Oxct|Oxct2|Scot|Scot-t1	3-oxoacid CoA transferase 2A	protein-coding	0.070000	0.661692	
mm_50425.1	chr6	48841463	48841663	+	1	NA	NA	NA	80	NM_025326	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.020000	0.592040	
mm_148783.1	chr19	6112843	6113043	+	1	NA	NA	NA	5643	NM_133678	66406	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.040000	0.577114	
mm_51654.1	chr6	86077950	86078150	+	1	NA	NA	NA	2	NM_001271859	11519	Mm.104155	NM_013458	ENSMUSG00000030000	Add2	2900072M03Rik|add97	adducin 2 (beta)	protein-coding	0.015000	0.537313	
mm_168001.1	chrY	206089	206289	+	1	NA	NA	NA	39	NR_126545	69438		NR_126545	ENSMUSG00000101796	1700020D14Rik	-	RIKEN cDNA 1700020D14 gene	ncRNA	0.005000	0.378109	-39(TAGTATATAAGG,-,0.00)
mm_77666.1	chr8	124721878	124722078	-	1	NA	NA	NA	-3	NM_145607	234875	Mm.38436	NM_145607	ENSMUSG00000037300	Ttc13	BC017545	tetratricopeptide repeat domain 13	protein-coding	0.115000	0.751244	
mm_31175.1	chr4	43492732	43492932	+	1	NA	NA	NA	227	NR_001460	19782		NR_001460	ENSMUSG00000088088	Rmrp	1110032O22Rik|Rmrpr	RNA component of mitochondrial RNAase P	ncRNA	0.075000	0.542289	
mm_42180.1	chr5	112261903	112262103	+	1	NA	NA	NA	6183	NM_001312893	12960	Mm.29488	NM_023695	ENSMUSG00000029343	Crybb1	3110006K12Rik|BB1CRY	crystallin, beta B1	protein-coding	0.000000	0.407960	
mm_55261.1	chr6	53680986	53681186	-	1	NA	NA	NA	107712	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.035000	0.641791	
mm_57022.1	chr6	122279844	122280044	-	1	NA	NA	NA	2889	NM_016970	50928	Mm.20434	NM_016970	ENSMUSG00000030114	Klrg1	2F1-Ag|MAFA|MAFA-L	killer cell lectin-like receptor subfamily G, member 1	protein-coding	0.015000	0.487562	
mm_127595.1	chr15	102393694	102393894	+	1	NA	NA	NA	-12522	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.000000	0.472637	-28(CCATATAAAAAG,-,0.00)
mm_146398.1	chr18	82910774	82910974	+	1	NA	NA	NA	-5	NM_183033	329003	Mm.326526	NM_183033	ENSMUSG00000058881	Zfp516	C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222	zinc finger protein 516	protein-coding	0.205000	0.825871	
mm_94988.1	chr11	31870812	31871012	+	1	NA	NA	NA	-28	NM_001290676	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.110000	0.691542	
mm_132989.1	chr16	52468584	52468784	+	1	NA	NA	NA	-15603	NM_001331110	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.472637	
mm_92080.1	chr10	62756458	62756658	-	1	NA	NA	NA	9048	NR_028557	100217463		NR_028557		Snord98	MBII-419	small nucleolar RNA, C/D box 98	snoRNA	0.015000	0.388060	
mm_141713.1	chr17	34025400	34025600	-	1	NA	NA	NA	-408	NR_029800	723823		NR_029800	ENSMUSG00000065555	Mir219a-1	Mir219-1|Mirn219-1|mir-219a-1|mmu-mir-219a-1	microRNA 219a-1	ncRNA	0.020000	0.601990	
mm_61993.1	chr7	91108723	91108923	+	1	NA	NA	NA	18037	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.338308	
mm_17970.1	chr2	37591477	37591677	-	1	NA	NA	NA	55708	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding	0.000000	0.328358	-93(CCTTTTAAACCA,+,0.00)
mm_7875.1	chr1	133010607	133010807	-	1	NA	NA	NA	14709	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	0.010000	0.447761	-45(GTTTTTAGAGGG,+,0.00)
mm_21799.1	chr2	164911093	164911293	-	1	NA	NA	NA	557	NM_199027	329559	Mm.330776	NM_199027	ENSMUSG00000039834	Zfp335	1810045J01Rik|NIF-1|Nif1|Znf335	zinc finger protein 335	protein-coding	0.090000	0.726368	
mm_22308.1	chr2	180386658	180386858	-	1	NA	NA	NA	-873	NR_040745	320485	Mm.405172	NR_040745		B230312C02Rik	-	RIKEN cDNA B230312C02 gene	ncRNA	0.015000	0.572139	
mm_156241.1	chrX	136225449	136225649	+	1	NA	NA	NA	1508	NM_001127169	100040972	Mm.18125	NM_001127169	ENSMUSG00000079428	Tceal7	1110018P05Rik	transcription elongation factor A (SII)-like 7	protein-coding	0.010000	0.368159	5(CCCTTTTAAAGC,-,0.00),6(CCTTTTAAAGCA,+,0.00)
mm_45859.1	chr5	87788531	87788731	-	1	NA	NA	NA	14181	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.010000	0.373134	
mm_54455.1	chr6	34746417	34746617	-	1	NA	NA	NA	-33915	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.015000	0.537313	
mm_167113.1	chr7	117449652	117449852	-	1	NA	NA	NA	68773	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.015000	0.512438	
mm_42995.1	chr5	123344571	123344771	+	1	NA	NA	NA	223	NM_029850	77045	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0.080000	0.636816	
mm_22839.1	chr3	27689578	27689778	+	1	NA	NA	NA	20761	NM_173182	72007	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.020000	0.567164	
mm_148215.1	chr18	80236576	80236776	-	1	NA	NA	NA	10426	NM_001136181	66255	Mm.272341	NM_001136181	ENSMUSG00000078963	Hsbp1l1	1810005K13Rik	heat shock factor binding protein 1-like 1	protein-coding	0.070000	0.611940	
mm_68609.1	chr7	116334060	116334260	-	1	NA	NA	NA	30	NM_026533	68052	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0.110000	0.656716	
mm_71068.1	chr8	34146231	34146431	+	1	NA	NA	NA	408	NM_026609	68192	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	0.040000	0.467662	27(CACCTTAAAAAC,-,0.00),29(CCTTAAAAACAC,+,0.00)
mm_28769.1	chr3	95904588	95904788	-	1	NA	NA	NA	-49	NM_011797	23831	Mm.489647	NM_011797	ENSMUSG00000038526	Car14	AW536446|Ca14	carbonic anhydrase 14	protein-coding	0.045000	0.597015	-53(CGCTATTTAAGG,-,0.00),16(CACCTTAAAAGC,-,0.00),18(CCTTAAAAGCGG,+,0.00)
mm_42732.1	chr5	120621509	120621709	+	1	NA	NA	NA	8479	NM_028041	71990	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0.025000	0.606965	
mm_132448.1	chr16	35983330	35983530	+	1	NA	NA	NA	67	NM_008465	16646	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0.130000	0.736318	
mm_138793.1	chr17	37492202	37492402	+	1	NA	NA	NA	-166	NM_146328	258325	Mm.484339	NM_146328	ENSMUSG00000090894	Olfr110	MOR249-2	olfactory receptor 110	protein-coding	0.000000	0.417910	
mm_82873.1	chr9	32424063	32424263	-	1	NA	NA	NA	30178	NM_001168354	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.045000	0.547264	
mm_137544.1	chr17	27556779	27556979	+	1	NA	NA	NA	226	NM_001166477	111241	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1-rs1	ENSMUSG00000041059|Hmgi-rs1	high mobility group AT-hook I, related sequence 1	protein-coding	0.120000	0.716418	
mm_57350.1	chr6	124756737	124756937	-	1	NA	NA	NA	-350	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.115000	0.746269	
mm_142798.1	chr17	50190558	50190758	-	1	NA	NA	NA	-161	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.065000	0.651741	
mm_118514.1	chr14	14346523	14346723	+	1	NA	NA	NA	128	NM_008369	16188	Mm.425857	NM_008369	ENSMUSG00000068758	Il3ra	CD123|CDw123|SUT-1	interleukin 3 receptor, alpha chain	protein-coding	0.055000	0.641791	
mm_171626.1	chr4	17171811	17172011	+	1	NA	NA	NA	-680982	NR_135158	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.035000	0.542289	
mm_57524.1	chr6	125812208	125812408	-	1	NA	NA	NA	121889	NM_153589	243634	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.010000	0.512438	
mm_102304.1	chr11	55608097	55608297	-	1	NA	NA	NA	1	NM_001290821	14654	Mm.89320	NM_020492	ENSMUSG00000000263	Glra1	nmf11|oscillator|ot|spasmodic|spd	glycine receptor, alpha 1 subunit	protein-coding	0.030000	0.606965	
mm_134883.1	chr16	29232938	29233138	-	1	NA	NA	NA	23343	NM_013751	27281	Mm.103650	NM_013751	ENSMUSG00000022525	Hrasls	2810012B06Rik|A-C1|HRSL1|Hrasrs	HRAS-like suppressor	protein-coding	0.005000	0.393035	
mm_37350.1	chr4	120032276	120032476	-	1	NA	NA	NA	-128830	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.055000	0.656716	
mm_44679.1	chr5	30072266	30072466	-	1	NA	NA	NA	1259	NR_033402	22171	Mm.268395	NM_021288	ENSMUSG00000025747	Tyms	Ts	thymidylate synthase	protein-coding	0.010000	0.363184	
mm_167563.1	chr9	40469666	40469866	+	1	NA	NA	NA	-14002	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.020000	0.502488	
mm_131092.1	chr16	4886178	4886378	+	1	NA	NA	NA	178	NM_001252437	17237	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.135000	0.776119	
mm_161859.1	chr18	25754004	25754204	-	1	NA	NA	NA	-121	NM_001174074	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.040000	0.512438	
mm_158173.1	chrX	103821790	103821990	-	1	NA	NA	NA	98	NM_009197	20502	Mm.388973	NM_009197	ENSMUSG00000033965	Slc16a2	AW105741|Mct8|Xpct	solute carrier family 16 (monocarboxylic acid transporters), member 2	protein-coding	0.070000	0.676617	
mm_51273.1	chr6	72115211	72115411	+	1	NA	NA	NA	7629	NR_045163	71265	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.030000	0.527363	-34(CAGTATTTAAGC,-,0.00)
mm_93173.1	chr10	93311079	93311279	-	1	NA	NA	NA	-20	NM_001322265	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.155000	0.840796	
mm_94765.1	chr11	21238472	21238672	+	1	NA	NA	NA	-460	NM_139061	245944	Mm.170103	NM_139061	ENSMUSG00000020128	Vps54	Hcc8|Vps54l|mSLP8|wr	VPS54 GARP complex subunit	protein-coding	0.060000	0.597015	
mm_150181.1	chr19	32637537	32637737	+	1	NA	NA	NA	17632	NM_011864	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.025000	0.497512	
mm_60830.1	chr7	45708072	45708272	+	1	NA	NA	NA	2925	NM_016974	13170	Mm.24222	NM_016974	ENSMUSG00000059824	Dbp	-	D site albumin promoter binding protein	protein-coding	0.035000	0.462687	
mm_46014.1	chr5	90897506	90897706	-	1	NA	NA	NA	-6293	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.000000	0.378109	47(CATTATAAAAAG,-,0.00)
mm_42259.1	chr5	114065367	114065567	+	1	NA	NA	NA	25913	NM_026805	68666	Mm.63584	NM_026805	ENSMUSG00000042078	Svop	1110030H18Rik|AI415691|msvop	SV2 related protein	protein-coding	0.030000	0.552239	
mm_164487.1	chr16	81850508	81850708	+	1	NA	NA	NA	649911	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.005000	0.447761	
mm_33223.1	chr4	126705967	126706167	+	1	NA	NA	NA	28424	NM_011970	26445	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	0.005000	0.472637	
mm_137682.1	chr17	28823534	28823734	+	1	NA	NA	NA	22508	NM_001081315	268936	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0.005000	0.527363	
mm_133360.1	chr16	84702909	84703109	+	1	NA	NA	NA	-10014	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.110000	0.676617	
mm_96428.1	chr11	67277115	67277315	+	1	NA	NA	NA	91	NM_177369	17885	Mm.340163	NM_177369	ENSMUSG00000055775	Myh8	4832426G23Rik|AI327267|MHCp|MyHC-pn|Myhs-p|Myhsp	myosin, heavy polypeptide 8, skeletal muscle, perinatal	protein-coding	0.010000	0.582090	-33(TCCTATATAAGC,-,0.00)
mm_100367.1	chr11	119081294	119081494	+	1	NA	NA	NA	4843	NM_007625	12418	Mm.268070	NM_007625	ENSMUSG00000039989	Cbx4	MPc2|PC2	chromobox 4	protein-coding	0.050000	0.666667	
mm_153127.1	chr19	34165877	34166077	-	1	NA	NA	NA	64	NM_024204	52024	Mm.183030	NM_024204	ENSMUSG00000024774	Ankrd22	5430429D21Rik|D19Ertd675e	ankyrin repeat domain 22	protein-coding	0.015000	0.532338	
mm_115975.1	chr13	24178151	24178351	-	1	NA	NA	NA	102539	NM_001311122	68732	Mm.211047	NM_026825	ENSMUSG00000021338	Carmil1	1110037D04Rik|AI425970|CARMIL|CARML1|D130057M20|Lrrc16|Lrrc16a	capping protein regulator and myosin 1 linker 1	protein-coding	0.035000	0.532338	
mm_9516.1	chr1	173748108	173748308	-	1	NA	NA	NA	-6399	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.005000	0.393035	
mm_13600.1	chr2	112618898	112619098	+	1	NA	NA	NA	59316	NM_001165935	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.015000	0.482587	
mm_51402.1	chr6	78372744	78372944	+	1	NA	NA	NA	1959	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.010000	0.472637	
mm_54062.1	chr6	13871382	13871582	-	1	NA	NA	NA	1	NR_024619	66520	Mm.29615	NM_183258		2610001J05Rik	C79299	RIKEN cDNA 2610001J05 gene	ncRNA	0.045000	0.567164	
mm_901.1	chr1	53784372	53784572	+	1	NA	NA	NA	743	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.040000	0.492537	
mm_21804.1	chr2	165004253	165004453	-	1	NA	NA	NA	30426	NM_144892	228869	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	0.020000	0.497512	
mm_140297.1	chr17	85620904	85621104	+	1	NA	NA	NA	170	NM_011381	20473	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0.060000	0.616915	
mm_27204.1	chr3	35754344	35754544	-	1	NA	NA	NA	306	NM_029570	76295	Mm.239416	NM_029570	ENSMUSG00000037400	Atp11b	1110019I14Rik|ATPIF|ATPIR|mKIAA0956	ATPase, class VI, type 11B	protein-coding	0.165000	0.796020	
mm_153659.1	chr19	44395203	44395403	-	1	NA	NA	NA	12406	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.015000	0.422886	
mm_47213.1	chr5	121009361	121009561	-	1	NA	NA	NA	77	NM_011286	19894	Mm.181166	NM_011286	ENSMUSG00000029608	Rph3a	2900002P20Rik|AU022689|AW108370	rabphilin 3A	protein-coding	0.060000	0.636816	
mm_132566.1	chr16	38104435	38104635	+	1	NA	NA	NA	-15275	NR_033221	414072	Mm.483602	NR_033221		BC031361	-	cDNA sequence BC031361	ncRNA	0.010000	0.298507	
mm_131626.1	chr16	20112411	20112611	+	1	NA	NA	NA	14957	NM_029436	75785	Mm.392450	NM_029436	ENSMUSG00000062901	Klhl24	1110046J11Rik|4930429H24Rik|6530402O20Rik|C85082	kelch-like 24	protein-coding	0.010000	0.338308	
mm_156512.1	chrX	150550873	150551073	+	1	NA	NA	NA	-3528	NR_106147	102465782		NR_106147	ENSMUSG00000099172	Mir3620	Gm27984|mmu-mir-3620	microRNA 3620	ncRNA	0.000000	0.412935	-82(TTTTAAAAAGCC,+,0.00)
mm_61877.1	chr7	89559914	89560114	+	1	NA	NA	NA	-42428	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.005000	0.308458	-25(ACTTATATACCC,+,0.00)
mm_36615.1	chr4	89294438	89294638	-	1	NA	NA	NA	81	NM_009877	12578	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin-dependent kinase inhibitor 2A	protein-coding	0.100000	0.671642	
mm_19616.1	chr2	102812081	102812281	-	1	NA	NA	NA	89484	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.000000	0.502488	33(GGTCATAAAAGG,-,0.00)
mm_58959.1	chr7	18925333	18925533	+	1	NA	NA	NA	-455	NM_001029877	384569	Mm.262724	NM_001029877	ENSMUSG00000030411	Nova2	Gm1424	neuro-oncological ventral antigen 2	protein-coding	0.075000	0.701493	
mm_130527.1	chr15	98898363	98898563	-	1	NA	NA	NA	77	NM_007857	13363	Mm.324688	NM_007857	ENSMUSG00000023000	Dhh	C78960	desert hedgehog	protein-coding	0.030000	0.597015	
mm_44564.1	chr5	24624321	24624521	-	1	NA	NA	NA	-21032	NR_003953	72252	Mm.87446	NR_003953	ENSMUSG00000038165	1700022A21Rik	-	glycerol-3-phosphate dehydrogenase 1-like pseudogene	pseudo	0.095000	0.691542	
mm_67631.1	chr7	84232784	84232984	-	1	NA	NA	NA	-80991	NM_133722	70178	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.005000	0.452736	
mm_34120.1	chr4	139233420	139233620	+	1	NA	NA	NA	39409	NM_001271405	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.010000	0.552239	
mm_53066.1	chr6	124914095	124914295	+	1	NA	NA	NA	-2490	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.030000	0.601990	
mm_170184.1	chr17	6122128	6122328	-	1	NA	NA	NA	15398	NM_001103181	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.040000	0.567164	-26(GGCTTTAAGAAC,-,0.00),-25(GCTTTAAGAACC,+,0.00)
mm_82048.1	chr9	122351817	122352017	+	1	NA	NA	NA	301	NM_026179	67469	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0.135000	0.761194	
mm_31742.1	chr4	63215445	63215645	+	1	NA	NA	NA	133	NM_025685	373864	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0.090000	0.651741	
mm_127112.1	chr15	97964146	97964346	+	1	NA	NA	NA	17	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.145000	0.766169	
mm_125167.1	chr15	31331887	31332087	+	1	NA	NA	NA	35772	NM_001164441	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.010000	0.467662	
mm_4041.1	chr1	165774501	165774701	+	1	NA	NA	NA	10821	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.010000	0.402985	
mm_34515.1	chr4	148901065	148901265	+	1	NA	NA	NA	96773	NM_027195	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.070000	0.572139	
mm_3900.1	chr1	161705407	161705607	+	1	NA	NA	NA	82988	NM_001205243	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.000000	0.442786	
mm_146520.1	chr18	4352820	4353020	-	1	NA	NA	NA	33	NM_007746	26410	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.065000	0.661692	
mm_44197.1	chr5	3641352	3641552	-	1	NA	NA	NA	6484	NM_026033	67210	Mm.178424	NM_026033	ENSMUSG00000007415	Gatad1	2310031E19Rik|2810047M21Rik|8430439A17Rik|9130430G15Rik|B330017N08Rik|ENSMUSG00000073241|Odag	GATA zinc finger domain containing 1	protein-coding	0.040000	0.492537	
mm_149458.1	chr19	11518414	11518614	+	1	NA	NA	NA	-45	NM_027209	69774	Mm.436639	NM_027209	ENSMUSG00000024677	Ms4a6b	1810027D10Rik	membrane-spanning 4-domains, subfamily A, member 6B	protein-coding	0.000000	0.427861	
mm_121324.1	chr14	113315009	113315209	+	1	NA	NA	NA	1293679	NR_030150	723922		NR_030150	ENSMUSG00000070099	Mir466	Mirn466|mmu-mir-466	microRNA 466	ncRNA	0.035000	0.497512	
mm_172039.1	chr6	12692263	12692463	+	1	NA	NA	NA	56890	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding	0.015000	0.378109	
mm_30749.1	chr4	14899310	14899510	+	1	NA	NA	NA	-31231	NM_001243100	100038514	Mm.331495	NM_001243100		Gm11837	OTTMUSG00000004551	predicted gene 11837	protein-coding	0.010000	0.298507	
mm_158458.1	chrX	140599348	140599548	-	1	NA	NA	NA	1074	NM_001077364	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.145000	0.761194	
mm_132711.1	chr16	43503319	43503519	+	1	NA	NA	NA	-83223	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.025000	0.517413	
mm_146264.1	chr18	77835085	77835285	+	1	NA	NA	NA	40635	NM_013831	19201	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.025000	0.467662	
mm_18125.1	chr2	44997554	44997754	-	1	NA	NA	NA	25523	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.005000	0.457711	
mm_59615.1	chr7	28144104	28144304	+	1	NA	NA	NA	14738	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.015000	0.557214	
mm_96838.1	chr11	70018353	70018553	+	1	NA	NA	NA	-152	NM_001109752	13385	Mm.27256	NM_007864	ENSMUSG00000020886	Dlg4	Dlgh4|PSD-95|PSD95|SAP90|SAP90A	discs, large homolog 4 (Drosophila)	protein-coding	0.040000	0.681592	
mm_153395.1	chr19	40415204	40415404	-	1	NA	NA	NA	-12994	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.010000	0.507463	
mm_157602.1	chrX	53370421	53370621	-	1	NA	NA	NA	38	NM_027409	70380	Mm.491083	NM_027409	ENSMUSG00000023074	Mospd1	1810018L05Rik	motile sperm domain containing 1	protein-coding	0.050000	0.661692	
mm_80878.1	chr9	98986326	98986526	+	1	NA	NA	NA	53	NM_011810	23873	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0.130000	0.731343	
mm_93799.1	chr10	120898789	120898989	-	1	NA	NA	NA	82	NM_177092	320183	Mm.169755	NM_177092	ENSMUSG00000051236	Msrb3	D430026P16Rik|I-8-23|MsrB2	methionine sulfoxide reductase B3	protein-coding	0.140000	0.756219	
mm_159049.1	chr1	185322788	185322988	-	1	NA	NA	NA	6513	NM_198653	381314	Mm.275841	NM_198653	ENSMUSG00000026618	Iars2	2010002H18Rik|C79125	isoleucine-tRNA synthetase 2, mitochondrial	protein-coding	0.030000	0.437811	
mm_101698.1	chr11	40752239	40752439	-	1	NA	NA	NA	2947	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.030000	0.467662	
mm_11550.1	chr2	32719485	32719685	+	1	NA	NA	NA	-1470	NR_045535	27387	Mm.9593	NM_013781	ENSMUSG00000059013	Sh2d3c	Chat|Nsp3|Shep1	SH2 domain containing 3C	protein-coding	0.025000	0.507463	
mm_36119.1	chr4	58912001	58912201	-	1	NA	NA	NA	624	NM_172381	230249	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|mKIAA0368	expressed sequence AI314180	protein-coding	0.190000	0.800995	
mm_26085.1	chr3	136692166	136692366	+	1	NA	NA	NA	22200	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.015000	0.427861	
mm_8702.1	chr1	158712793	158712993	-	1	NA	NA	NA	207268	NR_030441	735253		NR_030441	ENSMUSG00000070103	Mir488	Mirn488|mir-488|mmu-mir-488	microRNA 488	ncRNA	0.000000	0.348259	-1(GCTTAAATACTG,+,0.00)
mm_14374.1	chr2	129630222	129630422	+	1	NA	NA	NA	37153	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.030000	0.601990	
mm_31606.1	chr4	58327174	58327374	+	1	NA	NA	NA	41312	NM_010944	18198	Mm.16148	NM_010944	ENSMUSG00000057280	Musk	Mdk4|Mlk|Nsk1|Nsk2|Nsk3	muscle, skeletal, receptor tyrosine kinase	protein-coding	0.015000	0.457711	
mm_32602.1	chr4	111972952	111973152	+	1	NA	NA	NA	125	NM_001142775	328505	Mm.226771	NM_177818	ENSMUSG00000049214	Skint7	C130057D23Rik	selection and upkeep of intraepithelial T cells 7	protein-coding	0.000000	0.437811	
mm_165730.1	chr3	106130822	106131022	+	1	NA	NA	NA	17540	NM_023186	81600	Mm.46418	NM_023186	ENSMUSG00000062778	Chia1	2200003E03Rik|AMCase|Chia|YNL	chitinase, acidic 1	protein-coding	0.000000	0.442786	
mm_140896.1	chr17	24073351	24073551	-	1	NA	NA	NA	34	NM_027008	69259	Mm.28171	NM_027008	ENSMUSG00000016946	Kctd5	2610030N08Rik|mKIAA0176	potassium channel tetramerisation domain containing 5	protein-coding	0.095000	0.681592	-36(CTGTATTAAAGA,-,0.00)
mm_170817.1	chr2	176423539	176423739	+	1	NA	NA	NA	-16	NM_001033123	13999		NM_001033123	ENSMUSG00000078889	Gm14288	OTTMUSG00000016199	predicted gene 14288	protein-coding	0.010000	0.492537	
mm_89982.1	chr10	111725031	111725231	+	1	NA	NA	NA	-130858	NR_045344	71321	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.005000	0.457711	-34(GACTATATATGG,-,0.00)
mm_101642.1	chr11	36433009	36433209	-	1	NA	NA	NA	-453020	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.035000	0.447761	69(CCTTTAAAATCC,+,0.00),79(CCTTTTATGGAG,+,0.00)
mm_77055.1	chr8	109578948	109579148	-	1	NA	NA	NA	124	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.030000	0.597015	-34(AGGCATAAAGGG,-,0.00)
mm_111747.1	chr12	103947027	103947227	-	1	NA	NA	NA	9770	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	0.020000	0.492537	
mm_19565.1	chr2	101623993	101624193	-	1	NA	NA	NA	-655	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.005000	0.402985	-33(GAGTATAAAAGG,-,0.00)
mm_57647.1	chr6	128438433	128438633	-	1	NA	NA	NA	98	NM_010219	14228	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	59kDa|AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	0.145000	0.731343	
mm_172656.1	chr8	37467644	37467844	-	1	NA	NA	NA	-443506	NR_126063	414128	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	0.005000	0.482587	-18(TCCTTTATAAAG,-,0.00),-16(CTTTATAAAGTG,+,0.00)
mm_11228.1	chr2	29802537	29802737	+	1	NA	NA	NA	-43	NM_011989	26569	Mm.330113	NM_011989	ENSMUSG00000059316	Slc27a4	BB144259|FATP4	solute carrier family 27 (fatty acid transporter), member 4	protein-coding	0.085000	0.696517	
mm_100650.1	chr11	3148812	3149012	-	1	NA	NA	NA	24891	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.020000	0.457711	
mm_58759.1	chr7	13623878	13624078	+	1	NA	NA	NA	11	NM_001184980	434264	Mm.359414	NM_001184980	ENSMUSG00000078799	Sult2a5	EG434264|Gm15438|OTTMUSG00000021844	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 5	protein-coding	0.000000	0.343284	
mm_98126.1	chr11	87331522	87331722	+	1	NA	NA	NA	27372	NM_177167	320472	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	0.005000	0.417910	
mm_141080.1	chr17	25868607	25868807	-	1	NA	NA	NA	31	NM_026633	68241	Mm.328870	NM_026633	ENSMUSG00000025732	Fam195a	9530058B02Rik|Mcrip2	family with sequence similarity 195, member A	protein-coding	0.090000	0.706468	-63(CTCCTTAAAGGG,-,0.00),-61(CCTTAAAGGGGC,+,0.00)
mm_14879.1	chr2	148820020	148820220	+	1	NA	NA	NA	21	NM_027024	69294	Mm.46167	NM_027024	ENSMUSG00000036924	Cst13	1700006C19Rik|Cymg1|Mtcg1	cystatin 13	protein-coding	0.000000	0.527363	
mm_96311.1	chr11	63158704	63158904	+	1	NA	NA	NA	26001	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.010000	0.402985	
mm_84568.1	chr9	68969380	68969580	-	1	NA	NA	NA	204134	NR_033299	320440	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.025000	0.497512	
mm_41928.1	chr5	105698810	105699010	+	1	NA	NA	NA	-1059	NM_001122768	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.025000	0.597015	78(CCTTTTAGGGGC,+,0.00)
mm_39219.1	chr4	156197388	156197588	-	1	NA	NA	NA	0	NM_021604	11603	Mm.273098	NM_021604	ENSMUSG00000041936	Agrn	Agrin|nmf380	agrin	protein-coding	0.150000	0.820896	
mm_124957.1	chr15	12923954	12924154	+	1	NA	NA	NA	99239	NM_001130149	14000	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	0.025000	0.482587	
mm_69295.1	chr7	128237890	128238090	-	1	NA	NA	NA	41	NM_177001	100043133	Mm.183647	NM_177001	ENSMUSG00000062944	9130023H24Rik	GLI4	RIKEN cDNA 9130023H24 gene	protein-coding	0.075000	0.557214	
mm_78977.1	chr9	45370330	45370530	+	1	NA	NA	NA	245	NM_022004	59095	Mm.208287	NM_022004	ENSMUSG00000066705	Fxyd6	0610030I18Rik|Php	FXYD domain-containing ion transport regulator 6	protein-coding	0.070000	0.686567	
mm_94065.1	chr10	128400201	128400401	-	1	NA	NA	NA	165	NM_028051	72002	Mm.22983	NM_028051	ENSMUSG00000039878	Slc39a5	1810013D05Rik|2010205A06Rik|Zip5	solute carrier family 39 (metal ion transporter), member 5	protein-coding	0.020000	0.572139	
mm_149677.1	chr19	20492129	20492329	+	1	NA	NA	NA	-486	NR_015502	320092	Mm.482524	NR_015502		E030003E18Rik	1700127G21Rik	RIKEN cDNA E030003E18 gene	ncRNA	0.005000	0.447761	
mm_39376.1	chr5	12383286	12383486	+	1	NA	NA	NA	220	NM_028882	108151	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.060000	0.611940	
mm_82475.1	chr9	16502102	16502302	-	1	NA	NA	NA	-123971	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.110000	0.681592	
mm_97013.1	chr11	71019505	71019705	+	1	NA	NA	NA	-6	NM_025993	67139	Mm.28227	NM_025993	ENSMUSG00000040599	Mis12	2510025F08Rik|AU044651|Misc12	MIS12 kinetochore complex component	protein-coding	0.080000	0.597015	
mm_6135.1	chr1	64690952	64691152	-	1	NA	NA	NA	-293	NM_001097644	227210	Mm.39706	NM_001097644	ENSMUSG00000070871	Ccnyl1	9630037P07Rik|AW554339	cyclin Y-like 1	protein-coding	0.190000	0.870647	
mm_19989.1	chr2	118637445	118637645	-	1	NA	NA	NA	-26032	NM_001033254	214230	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 protein (Cdc42/Rac)-activated kinase 6	protein-coding	0.015000	0.517413	
mm_159985.1	chr6	114397902	114398102	+	1	NA	NA	NA	66	NM_001317125	15465	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.155000	0.791045	
mm_161204.1	chr13	58404771	58404971	+	1	NA	NA	NA	-1528	NM_001301341	15387	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.000000	0.363184	
mm_3248.1	chr1	136131293	136131493	+	1	NA	NA	NA	-8	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.105000	0.746269	
mm_165768.1	chr3	121577400	121577600	+	1	NA	NA	NA	-45156	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.015000	0.507463	
mm_45508.1	chr5	72504083	72504283	-	1	NA	NA	NA	25	NM_016869	53419	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.065000	0.631841	
mm_11721.1	chr2	36251619	36251819	+	1	NA	NA	NA	21293	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.000000	0.417910	9(GCCTATATAGTG,+,0.00)
mm_109014.1	chr12	103388646	103388846	+	1	NA	NA	NA	64	NM_001177841	68149	Mm.127378	NM_026580	ENSMUSG00000021203	Otub2	2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2	OTU domain, ubiquitin aldehyde binding 2	protein-coding	0.120000	0.721393	
mm_24748.1	chr3	95318747	95318947	+	1	NA	NA	NA	17	NM_001320492	76893	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.010000	0.582090	
mm_126345.1	chr15	79905391	79905591	+	1	NA	NA	NA	10468	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.035000	0.472637	
mm_86750.1	chr10	19531673	19531873	+	1	NA	NA	NA	-60176	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.000000	0.502488	
mm_106139.1	chr11	116490232	116490432	-	1	NA	NA	NA	14	NM_026364	67763	Mm.25125	NM_026364	ENSMUSG00000015869	Prpsap1	5730409F23Rik|PAP39	phosphoribosyl pyrophosphate synthetase-associated protein 1	protein-coding	0.160000	0.746269	
mm_72563.1	chr8	84125812	84126012	+	1	NA	NA	NA	-77	NM_001013384	244550	Mm.334654	NM_001013384	ENSMUSG00000012889	Podnl1	5832418A03Rik|Gm506	podocan-like 1	protein-coding	0.025000	0.587065	
mm_156619.1	chrX	153723514	153723714	+	1	NA	NA	NA	60	NM_027327	70123	Mm.146408	NM_027327	ENSMUSG00000086316	2210013O21Rik	AI181827|Thp5	RIKEN cDNA 2210013O21 gene	protein-coding	0.050000	0.582090	
mm_154840.1	chrX	20059455	20059655	+	1	NA	NA	NA	-15	NM_021715	60322	Mm.44827	NM_021715	ENSMUSG00000037347	Chst7	2600013M07Rik|C6ST-2|GST5|Gn6st-4|glcNAc6ST-4	carbohydrate (N-acetylglucosamino) sulfotransferase 7	protein-coding	0.045000	0.626866	
mm_67882.1	chr7	99347051	99347251	-	1	NA	NA	NA	6088	NM_009825	12406	Mm.22708	NM_009825	ENSMUSG00000070436	Serpinh1	BERF-1|Cbp1|Cbp2|Hsp47|J6|Serpinh2|gp46	serine (or cysteine) peptidase inhibitor, clade H, member 1	protein-coding	0.020000	0.582090	
mm_131372.1	chr16	13830514	13830714	+	1	NA	NA	NA	11363	NM_001346111	18203	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0.025000	0.502488	
mm_135959.1	chr16	74736151	74736351	-	1	NA	NA	NA	-325339	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.000000	0.283582	
mm_4099.1	chr1	167350109	167350309	+	1	NA	NA	NA	218	NM_019993	56752	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.090000	0.641791	
mm_80536.1	chr9	80305671	80305871	+	1	NA	NA	NA	140737	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.015000	0.402985	
mm_28183.1	chr3	88027357	88027557	-	1	NA	NA	NA	54	NM_022031	73940	Mm.294467	NM_022031	ENSMUSG00000004894	Hapln2	4930401E20Rik|Bral1	hyaluronan and proteoglycan link protein 2	protein-coding	0.000000	0.507463	42(GGCCATATATAG,-,0.00),44(CCATATATAGCC,+,0.00)
mm_135858.1	chr16	59632476	59632676	-	1	NA	NA	NA	-4369	NR_040564	75145	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	0.025000	0.383085	-58(AGGTTTATAAGC,-,0.00)
mm_61706.1	chr7	81213657	81213857	+	1	NA	NA	NA	-47	NM_008803	18584	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.200000	0.830846	
mm_72347.1	chr8	79639586	79639786	+	1	NA	NA	NA	10	NM_001081164	73945	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.140000	0.756219	
mm_65292.1	chr7	24457664	24457864	-	1	NA	NA	NA	-4719	NM_011113	18793	Mm.1359	NM_011113	ENSMUSG00000046223	Plaur	Cd87|u-PAR|uPAR	plasminogen activator, urokinase receptor	protein-coding	0.025000	0.527363	
mm_158437.1	chrX	140062467	140062667	-	1	NA	NA	NA	1	NM_001081668	279706	Mm.102590	NM_001081668	ENSMUSG00000072944	Nup62cl	Gm719	nucleoporin 62 C-terminal like	protein-coding	0.105000	0.661692	
mm_153361.1	chr19	40183469	40183669	-	1	NA	NA	NA	3717	NM_145499	226105	Mm.29119	NM_145499	ENSMUSG00000060613	Cyp2c70	-	cytochrome P450, family 2, subfamily c, polypeptide 70	protein-coding	0.000000	0.482587	
mm_83953.1	chr9	56927989	56928189	-	1	NA	NA	NA	282	NM_175483	235406	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	0.035000	0.527363	
mm_126631.1	chr15	83523305	83523505	+	1	NA	NA	NA	-3457	NM_007546	12124	Mm.267006	NM_007546	ENSMUSG00000016758	Bik	Biklk|Blk|Nbk	BCL2-interacting killer	protein-coding	0.025000	0.582090	
mm_136039.1	chr16	77421892	77422092	-	1	NA	NA	NA	92664	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.025000	0.512438	65(CCCTTGAAAAGC,-,0.00)
mm_96733.1	chr11	69758192	69758392	+	1	NA	NA	NA	341	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.075000	0.706468	
mm_22426.1	chr2	181598870	181599070	-	1	NA	NA	NA	177	NM_172676	229011	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	0.115000	0.706468	
mm_112536.1	chr13	9684167	9684367	+	1	NA	NA	NA	79543	NM_001347471	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.030000	0.477612	
mm_49601.1	chr6	30737952	30738152	+	1	NA	NA	NA	-1	NM_001252292	17294	Mm.335639	NM_008590	ENSMUSG00000051855	Mest	AA408879|AI256745|Peg1	mesoderm specific transcript	protein-coding	0.085000	0.666667	-34(GGGCTTTAAAAG,-,0.00),-33(GGCTTTAAAAGT,-,0.00),-32(GCTTTAAAAGTC,+,0.00)
mm_104827.1	chr11	99089169	99089369	-	1	NA	NA	NA	37	NM_172564	217169	Mm.262067	NM_172564	ENSMUSG00000017607	Tns4	9930017A07Rik|AA589547|AU016405|Cten	tensin 4	protein-coding	0.030000	0.532338	
mm_160026.1	chr6	130233240	130233440	-	1	NA	NA	NA	-18	NM_001110323	16638	Mm.441781	NM_014194	ENSMUSG00000067599	Klra7	LGL-1|Ly-49G.1|Ly-49G.2|Ly-49G.3|Ly49G.4|Ly49g|Ly49g1|Ly49g2	killer cell lectin-like receptor, subfamily A, member 7	protein-coding	0.000000	0.388060	
mm_106853.1	chr12	8008488	8008688	+	1	NA	NA	NA	30911	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.353234	
mm_167569.1	chr9	42399454	42399654	-	1	NA	NA	NA	375	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.020000	0.517413	
mm_27522.1	chr3	57295060	57295260	-	1	NA	NA	NA	6759	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	0.020000	0.482587	
mm_126534.1	chr15	82017707	82017907	+	1	NA	NA	NA	1438	NM_010247	14375	Mm.288809	NM_010247	ENSMUSG00000022471	Xrcc6	70kDa|G22p1|Ku70	X-ray repair complementing defective repair in Chinese hamster cells 6	protein-coding	0.005000	0.402985	
mm_87894.1	chr10	62070917	62071117	+	1	NA	NA	NA	39996	NM_027251	69894	Mm.294126	NM_027251	ENSMUSG00000020083	2010107G23Rik	AA545165	RIKEN cDNA 2010107G23 gene	protein-coding	0.040000	0.527363	49(GGCCAGAAAAGC,-,0.00)
mm_144977.1	chr18	37955484	37955684	+	1	NA	NA	NA	25	NM_153793	225392	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	0.110000	0.681592	
mm_65014.1	chr7	17093787	17093987	-	1	NA	NA	NA	19847	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.015000	0.487562	
mm_52168.1	chr6	99053372	99053572	+	1	NA	NA	NA	-25174	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.020000	0.432836	
mm_72478.1	chr8	83608415	83608615	+	1	NA	NA	NA	-33	NM_001308227	81489	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.125000	0.651741	
mm_77695.1	chr8	126589497	126589697	-	1	NA	NA	NA	3839	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.005000	0.383085	
mm_74632.1	chr8	13192264	13192464	-	1	NA	NA	NA	-3266	NR_035494	100316713		NR_035494	ENSMUSG00000088054	Mir1968	mir-1968|mmu-mir-1968	microRNA 1968	ncRNA	0.035000	0.532338	
mm_84333.1	chr9	64021992	64022192	-	1	NA	NA	NA	-33	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.085000	0.611940	-37(CCTTTAAGAGTT,+,0.00)
mm_159676.1	chr4	155667031	155667231	-	1	NA	NA	NA	2123	NM_001256108	76580	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	0.000000	0.447761	-62(GCCTCTAAAATG,-,0.00)
mm_170598.1	chr19	5802298	5802498	-	1	NA	NA	NA	274	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.010000	0.353234	45(AGTTCTAAAAGG,-,0.00)
mm_16077.1	chr2	168231123	168231323	+	1	NA	NA	NA	601	NM_001160330	69372	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	0.155000	0.721393	
mm_30538.1	chr4	3574889	3575089	+	1	NA	NA	NA	110	NM_054089	116940	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	0.115000	0.641791	
mm_57649.1	chr6	128438482	128438682	-	1	NA	NA	NA	49	NM_010219	14228	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	59kDa|AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	0.180000	0.766169	
mm_55962.1	chr6	85502847	85503047	-	1	NA	NA	NA	47	NM_001001160	330369	Mm.38777	NM_001001160	ENSMUSG00000047013	Fbxo41	9630017H13|D6Ertd538e	F-box protein 41	protein-coding	0.120000	0.796020	
mm_151707.1	chr19	4498509	4498709	-	1	NA	NA	NA	-26	NM_027237	69861	Mm.282978	NM_027237	ENSMUSG00000042041	2010003K11Rik	-	RIKEN cDNA 2010003K11 gene	protein-coding	0.005000	0.517413	
mm_56036.1	chr6	86650067	86650267	-	1	NA	NA	NA	18992	NM_010751	17119	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.010000	0.497512	
mm_143764.1	chr17	81627811	81628011	-	1	NA	NA	NA	110476	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.010000	0.407960	
mm_76176.1	chr8	82394557	82394757	-	1	NA	NA	NA	7929	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.000000	0.422886	
mm_61101.1	chr7	51880204	51880404	+	1	NA	NA	NA	1337	NM_001330607	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.015000	0.507463	
mm_32505.1	chr4	108466940	108467140	+	1	NA	NA	NA	7614	NM_175472	230594	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.035000	0.398010	20(TTTTTTATGGAG,+,0.00)
mm_56008.1	chr6	86497694	86497894	-	1	NA	NA	NA	-9567	NR_040292	381792	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.025000	0.547264	
mm_122759.1	chr14	54227270	54227470	-	1	NA	NA	NA	26559	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.462687	
mm_37829.1	chr4	131990725	131990925	-	1	NA	NA	NA	58253	NM_001128606	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.020000	0.442786	
mm_141631.1	chr17	32947259	32947459	-	1	NA	NA	NA	2	NM_130882	170716	Mm.254838	NM_130882	ENSMUSG00000024055	Cyp4f13	0610030I10Rik|Cypf13	cytochrome P450, family 4, subfamily f, polypeptide 13	protein-coding	0.025000	0.552239	
mm_78791.1	chr9	44045681	44045881	+	1	NA	NA	NA	2397	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.005000	0.522388	
mm_142550.1	chr17	46599658	46599858	-	1	NA	NA	NA	29746	NM_175168	71461	Mm.181833	NM_175168	ENSMUSG00000023972	Ptk7	8430404F20Rik|chz|mPTK7/CCK4	PTK7 protein tyrosine kinase 7	protein-coding	0.010000	0.462687	
mm_122324.1	chr14	36968657	36968857	-	1	NA	NA	NA	7	NM_027045	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.125000	0.761194	
mm_164784.1	chr18	7925936	7926136	+	1	NA	NA	NA	56839	NM_153085	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.010000	0.248756	
mm_128753.1	chr15	64921294	64921494	-	1	NA	NA	NA	902	NM_001331075	11514	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	0.065000	0.621891	
mm_108731.1	chr12	87443819	87444019	+	1	NA	NA	NA	23	NM_026958	380773	Mm.355701	NM_026958	ENSMUSG00000021040	Slirp	1810035L17Rik	SRA stem-loop interacting RNA binding protein	protein-coding	0.075000	0.557214	22(CGCCATAAAGGG,-,0.00),24(CCATAAAGGGGC,+,0.00)
mm_19757.1	chr2	105126409	105126609	-	1	NA	NA	NA	1	NR_015462	329480	Mm.246679	NR_015462	ENSMUSG00000074987	Wt1os	6030498F17|AI314831|Wt1-as	Wilms tumor 1 homolog, opposite strand	ncRNA	0.070000	0.656716	
mm_88628.1	chr10	79886211	79886411	+	1	NA	NA	NA	-1	NM_015779	50701	Mm.262194	NM_015779	ENSMUSG00000020125	Elane	Ela2|F430011M15Rik|NE	elastase, neutrophil expressed	protein-coding	0.025000	0.582090	
mm_159342.1	chr3	59006621	59006821	+	1	NA	NA	NA	-257	NM_177855	329650	Mm.240059	NM_177855	ENSMUSG00000056476	Med12l	A130035F20|A630079M02|AU044581|TRALPUSH	mediator complex subunit 12-like	protein-coding	0.120000	0.756219	
mm_35102.1	chr4	9287234	9287434	-	1	NA	NA	NA	18017	NM_028940	74438	Mm.473368	NM_028940	ENSMUSG00000041216	Clvs1	4933402J24Rik|Clvl1|Rlbp1l1	clavesin 1	protein-coding	0.005000	0.472637	
mm_40054.1	chr5	33996003	33996203	+	1	NA	NA	NA	119	NM_001001985	269642	Mm.274610	NM_001001985	ENSMUSG00000048142	Nat8l	1110038O08Rik|Shati	N-acetyltransferase 8-like	protein-coding	0.100000	0.676617	
mm_104940.1	chr11	100117315	100117515	-	1	NA	NA	NA	3162	NM_001313949	16663	Mm.4646	NM_010662	ENSMUSG00000044041	Krt13	CK13|K13|Krt-1.13|Krt1-13	keratin 13	protein-coding	0.000000	0.457711	
mm_74860.1	chr8	24818452	24818652	-	1	NA	NA	NA	5817	NM_001272058	11499	Mm.143889	NM_007401	ENSMUSG00000031554	Adam5	tMDC II|tMDCII	a disintegrin and metallopeptidase domain 5	protein-coding	0.005000	0.517413	
mm_96319.1	chr11	63989670	63989870	+	1	NA	NA	NA	25544	NR_131111	78883	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	0.015000	0.432836	
mm_108870.1	chr12	99609105	99609305	+	1	NA	NA	NA	18769	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.045000	0.512438	
mm_45534.1	chr5	72752693	72752893	-	1	NA	NA	NA	-16	NM_001122754	22165	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.015000	0.467662	
mm_61261.1	chr7	66079667	66079867	+	1	NA	NA	NA	118	NM_024439	109815	Mm.482127	NM_024439	ENSMUSG00000075701	Selenos	1500011E07Rik|C78786|H-4|H-47|H4|H47|Sels|Vimp	selenoprotein S	protein-coding	0.125000	0.706468	
mm_170557.1	chr19	4192020	4192220	+	1	NA	NA	NA	-54	NM_031868	19045	Mm.1970	NM_031868	ENSMUSG00000040385	Ppp1ca	Ppp1c|dism2	protein phosphatase 1, catalytic subunit, alpha isoform	protein-coding	0.120000	0.776119	
mm_17122.1	chr2	24733105	24733305	-	1	NA	NA	NA	29947	NM_001042528	12287	Mm.4424	NM_007579	ENSMUSG00000004113	Cacna1b	AW050276|AW060892|AW822256|BIII|Cav2.2|Cchn1a|alpha(1B)	calcium channel, voltage-dependent, N type, alpha 1B subunit	protein-coding	0.010000	0.412935	
mm_34306.1	chr4	141793699	141793899	+	1	NA	NA	NA	187	NM_001277932	12371	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	0.140000	0.781095	
mm_170299.1	chr18	32769124	32769324	+	1	NA	NA	NA	-46159	NM_021367	53603	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	0.010000	0.482587	
mm_23086.1	chr3	36863072	36863272	+	1	NA	NA	NA	66	NM_172679	229227	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0.095000	0.686567	
mm_28625.1	chr3	95133806	95134006	-	1	NA	NA	NA	106	NM_027013	69269	Mm.182944	NM_027013	ENSMUSG00000092607	Scnm1	3110001I17Rik|Scnm1-ps	sodium channel modifier 1	protein-coding	0.045000	0.487562	13(GTCTTTTAAGAG,-,0.00),15(CTTTTAAGAGGG,+,0.00)
mm_136837.1	chr17	12746578	12746778	+	1	NA	NA	NA	5367	NR_027784	104103	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.000000	0.373134	
mm_40004.1	chr5	32898236	32898436	+	1	NA	NA	NA	34615	NM_001170567	277854	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	0.000000	0.393035	
mm_21532.1	chr2	163645050	163645250	-	1	NA	NA	NA	-7	NM_012032	26943	Mm.218473	NM_012032	ENSMUSG00000017707	Serinc3	AA959945|AA960047|AIGP1|DIFF33|TMS-1|Tde1	serine incorporator 3	protein-coding	0.100000	0.651741	
mm_100881.1	chr11	5989564	5989764	-	1	NA	NA	NA	33906	NM_019661	56418	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0.010000	0.597015	
mm_74325.1	chr8	126867966	126868166	+	1	NA	NA	NA	77855	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.005000	0.517413	
mm_72356.1	chr8	79711802	79712002	+	1	NA	NA	NA	82	NM_026904	68999	Mm.257445	NM_026904	ENSMUSG00000036977	Anapc10	1500026N15Rik|A830003M23Rik|APC10	anaphase promoting complex subunit 10	protein-coding	0.060000	0.601990	
mm_85671.1	chr9	107676506	107676706	-	1	NA	NA	NA	2986	NM_008140	14685	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.080000	0.567164	
mm_75439.1	chr8	47413566	47413766	-	1	NA	NA	NA	-61318	NM_175162	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.090000	0.701493	
mm_62613.1	chr7	107209072	107209272	+	1	NA	NA	NA	-273	NM_029660	76572	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	0.045000	0.502488	
mm_144465.1	chr18	23753580	23753780	+	1	NA	NA	NA	-45	NM_001162941	212307	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.060000	0.567164	
mm_79218.1	chr9	49340285	49340485	+	1	NA	NA	NA	-277	NM_010077	13489	Mm.41970	NM_010077	ENSMUSG00000032259	Drd2	D2R|Drd-2	dopamine receptor D2	protein-coding	0.120000	0.791045	
mm_21548.1	chr2	164070351	164070551	-	1	NA	NA	NA	651	NM_025996	67145	Mm.23173	NM_025996	ENSMUSG00000018322	Tomm34	2610100K07Rik|TOM34	translocase of outer mitochondrial membrane 34	protein-coding	0.105000	0.656716	
mm_6471.1	chr1	74068559	74068759	-	1	NA	NA	NA	55788	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.065000	0.651741	
mm_53081.1	chr6	124965484	124965684	+	1	NA	NA	NA	-55	NM_001164089	26894	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e	COP9 signalosome subunit 7A	protein-coding	0.125000	0.691542	
mm_98774.1	chr11	96777753	96777953	+	1	NA	NA	NA	-298	NM_001163389	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.065000	0.537313	
mm_10547.1	chr2	16650084	16650284	+	1	NA	NA	NA	293880	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.010000	0.462687	
mm_155292.1	chrX	61183772	61183972	+	1	NA	NA	NA	1686	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.005000	0.373134	
mm_127378.1	chr15	100870547	100870747	+	1	NA	NA	NA	2	NM_001077499	20273	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	0.185000	0.835821	
mm_18035.1	chr2	38727117	38727317	-	1	NA	NA	NA	-12675	NM_139051	26423	Mm.31387	NM_139051	ENSMUSG00000026751	Nr5a1	Ad4BP|ELP|ELP-3|Ftz-F1|Ftzf1|SF-1|SF1|STF-1	nuclear receptor subfamily 5, group A, member 1	protein-coding	0.005000	0.477612	
mm_8085.1	chr1	135631122	135631322	-	1	NA	NA	NA	-45867	NM_173437	215690	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.010000	0.502488	
mm_170571.1	chr19	51142673	51142873	-	1	NA	NA	NA	-464127	NM_001290356	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.055000	0.522388	
mm_139644.1	chr17	57377594	57377794	+	1	NA	NA	NA	19008	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.268657	
mm_18964.1	chr2	76807293	76807493	-	1	NA	NA	NA	132078	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.507463	
mm_164812.1	chr18	32980137	32980337	+	1	NA	NA	NA	41196	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.010000	0.502488	83(GCATTTAAAGAC,+,0.00)
mm_25976.1	chr3	133091797	133091997	+	1	NA	NA	NA	42	NM_027927	71793	Mm.246726	NM_027927	ENSMUSG00000028016	Ints12	1110020M19Rik|2810027J24Rik|4930529N21Rik|A230056J18Rik|AI666778|Phf22|int12	integrator complex subunit 12	protein-coding	0.090000	0.606965	
mm_38682.1	chr4	145054153	145054353	-	1	NA	NA	NA	136413	NM_001276502	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.010000	0.417910	
mm_170607.1	chr19	5845109	5845309	-	1	NA	NA	NA	269	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.015000	0.567164	
mm_158469.1	chrX	141207449	141207649	-	1	NA	NA	NA	-250838	NM_001164177	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	0.010000	0.422886	
mm_145860.1	chr18	65456134	65456334	+	1	NA	NA	NA	25237	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.318408	-72(CTCTTTATAAAA,-,0.00),-14(CCTTTTCTAGGT,+,0.00)
mm_76201.1	chr8	82848018	82848218	-	1	NA	NA	NA	-15238	NM_177378	330812	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	0.015000	0.398010	
mm_135647.1	chr16	52386710	52386910	-	1	NA	NA	NA	66271	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.442786	
mm_61433.1	chr7	73816492	73816692	+	1	NA	NA	NA	-89	NR_077222	100579147	Mm.109205	NR_077222	ENSMUSG00000074067	Gm10619	4932443D20|ENSMUSG00000074067	predicted gene 10619	ncRNA	0.000000	0.477612	
mm_29046.1	chr3	103364153	103364353	-	1	NA	NA	NA	84960	NM_001079830	94093	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.015000	0.432836	
mm_90698.1	chr10	130330876	130331076	+	1	NA	NA	NA	8124	NM_183264	67596	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	0.000000	0.452736	
mm_15081.1	chr2	153161439	153161639	+	1	NA	NA	NA	238	NM_133847	99237	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.060000	0.601990	
mm_60512.1	chr7	44479566	44479766	+	1	NA	NA	NA	-4851	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.010000	0.512438	
mm_38436.1	chr4	139380289	139380489	-	1	NA	NA	NA	-270	NM_001160319	69116	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0.090000	0.606965	
mm_109314.1	chr12	109560938	109561138	+	1	NA	NA	NA	-2654	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.045000	0.502488	
mm_4454.1	chr1	172698961	172699161	+	1	NA	NA	NA	1005	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding	0.015000	0.492537	
mm_48828.1	chr5	149068202	149068402	-	1	NA	NA	NA	-15245	NM_010439	15289	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.025000	0.512438	
mm_57226.1	chr6	123282399	123282599	-	1	NA	NA	NA	7372	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.333333	
mm_135961.1	chr16	74760555	74760755	-	1	NA	NA	NA	-349743	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.010000	0.402985	
mm_65994.1	chr7	30552261	30552461	-	1	NA	NA	NA	-89	NM_183321	333193	Mm.34885	NM_183321	ENSMUSG00000036864	Proser3	-	proline and serine rich 3	protein-coding	0.080000	0.562189	
mm_55333.1	chr6	56361782	56361982	-	1	NA	NA	NA	510	NM_001159952	18575	Mm.5145	NM_011054	ENSMUSG00000004347	Pde1c	-	phosphodiesterase 1C	protein-coding	0.010000	0.537313	
mm_4481.1	chr1	173440624	173440824	+	1	NA	NA	NA	20120	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.000000	0.517413	
mm_121127.1	chr14	101840725	101840925	+	1	NA	NA	NA	202	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.030000	0.402985	
mm_38195.1	chr4	135380725	135380925	-	1	NA	NA	NA	4847	NM_001168498	230822	Mm.35548	NM_145555	ENSMUSG00000043924	Ncmap	A330049M08Rik|AA545175|Mp11	noncompact myelin associated protein	protein-coding	0.035000	0.601990	
mm_45018.1	chr5	38561033	38561233	-	1	NA	NA	NA	462	NM_011715	22388	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0.060000	0.597015	
mm_132150.1	chr16	32105004	32105204	+	1	NA	NA	NA	5302	NM_025892	66994	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0.005000	0.582090	
mm_73734.1	chr8	113643088	113643288	+	1	NA	NA	NA	-25	NM_029139	668110	Mm.390078	NM_029139	ENSMUSG00000033409	Syce1l	4930481F22Rik|MMRP|PSESS|mmrp2	synaptonemal complex central element protein 1 like	protein-coding	0.045000	0.572139	
mm_40993.1	chr5	77285575	77285775	+	1	NA	NA	NA	12918	NR_039557	100628577		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.010000	0.368159	
mm_21277.1	chr2	156927966	156928166	-	1	NA	NA	NA	-40988	NM_029983	77799	Mm.29264	NM_029983	ENSMUSG00000027636	Sla2	A930009E21Rik|AI430952|SLAP-2|SLAP2	Src-like-adaptor 2	protein-coding	0.005000	0.497512	
mm_22549.1	chr3	9402911	9403111	+	1	NA	NA	NA	-67	NR_015499	320088	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.015000	0.522388	
mm_54201.1	chr6	24664899	24665099	-	1	NA	NA	NA	-4	NM_028459	73178	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0.135000	0.751244	
mm_105475.1	chr11	105936417	105936617	-	1	NA	NA	NA	7630	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.030000	0.567164	
mm_28474.1	chr3	92081260	92081460	-	1	NA	NA	NA	1782	NM_008508	16939	Mm.1121	NM_008508	ENSMUSG00000043165	Lor	AI036317|S77319	loricrin	protein-coding	0.115000	0.731343	
mm_38896.1	chr4	149853979	149854179	-	1	NA	NA	NA	-79812	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.005000	0.402985	-42(GTGTATTAAAGG,-,0.00)
mm_155123.1	chrX	48871949	48872149	+	1	NA	NA	NA	5664	NM_001085499	209005	Mm.336054	NM_001085499	ENSMUSG00000079606	Gm595	-	predicted gene 595	protein-coding	0.010000	0.502488	
mm_85716.1	chr9	108209421	108209621	-	1	NA	NA	NA	-19138	NM_007567	12217	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	0.020000	0.537313	
mm_29670.1	chr3	122629655	122629855	-	1	NA	NA	NA	-10041	NM_153118	214459	Mm.209491	NM_153118	ENSMUSG00000039735	Fnbp1l	2610318I01Rik|AW548221|TOCA1|toca-1	formin binding protein 1-like	protein-coding	0.035000	0.497512	
mm_116719.1	chr13	51701307	51701507	-	1	NA	NA	NA	49699	NM_029279	75420	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.040000	0.462687	71(GTGTTTATAAGA,-,0.00)
mm_111650.1	chr12	102757593	102757793	-	1	NA	NA	NA	117	NM_001142939	100859931	Mm.291222	NM_001142939	ENSMUSG00000041716	Gm20604	AK010878-Moap1	predicted gene 20604	protein-coding	0.120000	0.656716	
mm_160855.1	chr11	58307406	58307606	+	1	NA	NA	NA	437	NM_001040686	103836	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	0.090000	0.651741	-69(GGCTCTAAGAAG,-,0.00)
mm_112780.1	chr13	20090539	20090739	+	1	NA	NA	NA	132	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.130000	0.711443	
mm_111715.1	chr12	103729187	103729387	-	1	NA	NA	NA	8902	NM_009244	20701	Mm.439692	NM_009244	ENSMUSG00000071178	Serpina1b	D12Ucla2|Dom2|PI2|Spi1-2	serine (or cysteine) preptidase inhibitor, clade A, member 1B	protein-coding	0.005000	0.517413	
mm_76037.1	chr8	77387396	77387596	-	1	NA	NA	NA	-129560	NR_028125	70345	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.020000	0.492537	
mm_118097.1	chr13	103907648	103907848	-	1	NA	NA	NA	12838	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.005000	0.457711	
mm_132536.1	chr16	37868549	37868749	+	1	NA	NA	NA	249	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.160000	0.756219	
mm_32818.1	chr4	117445706	117445906	+	1	NA	NA	NA	51246	NM_025739	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.035000	0.537313	
mm_124769.1	chr15	6741857	6742057	+	1	NA	NA	NA	33576	NM_030168	78757	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.005000	0.383085	
mm_76144.1	chr8	81881913	81882113	-	1	NA	NA	NA	520573	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.015000	0.462687	
mm_87634.1	chr10	58332727	58332927	+	1	NA	NA	NA	9361	NM_026148	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.010000	0.417910	
mm_150581.1	chr19	40659575	40659775	+	1	NA	NA	NA	-95	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.035000	0.477612	
mm_27466.1	chr3	52634351	52634551	-	1	NA	NA	NA	-105273	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	0.015000	0.412935	
mm_169983.1	chr17	15010330	15010530	+	1	NA	NA	NA	-246	NM_001123367	100041639	Mm.440445	NM_001123367	ENSMUSG00000079710	Gm3448	-	predicted gene 3448	protein-coding	0.045000	0.532338	
mm_111693.1	chr12	103653396	103653596	-	1	NA	NA	NA	3722	NM_007618	12401	Mm.290079	NM_007618	ENSMUSG00000060807	Serpina6	Cbg	serine (or cysteine) peptidase inhibitor, clade A, member 6	protein-coding	0.005000	0.487562	
mm_168037.1	chrY	90742622	90742822	-	1	NA	NA	NA	12328	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.065000	0.641791	
mm_99893.1	chr11	109613351	109613551	+	1	NA	NA	NA	-2062	NM_145940	52639	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0.005000	0.442786	
mm_161842.1	chr17	88668513	88668713	+	1	NA	NA	NA	-47	NM_023630	71828	Mm.61330	NM_023630	ENSMUSG00000024154	Gtf2a1l	1700011N16Rik|Alf|Gtf2a1lf	general transcription factor IIA, 1-like	protein-coding	0.085000	0.616915	
mm_64895.1	chr7	15949935	15950135	-	1	NA	NA	NA	-3927	NM_133831	68077	Mm.277634	NM_133831	ENSMUSG00000041560	Gltscr2	5330430H08Rik|9430097C02Rik|AU041936|AW536441|PICT-1|R74911	glioma tumor suppressor candidate region gene 2	protein-coding	0.010000	0.497512	
mm_7607.1	chr1	126492604	126492804	-	1	NA	NA	NA	223	NM_172484	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.075000	0.666667	
mm_73760.1	chr8	115186567	115186767	+	1	NA	NA	NA	520227	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.040000	0.497512	
mm_51091.1	chr6	67205414	67205614	+	1	NA	NA	NA	-61465	NM_001113564	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.065000	0.412935	
mm_24555.1	chr3	93443401	93443601	+	1	NA	NA	NA	1171	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.050000	0.507463	
mm_97478.1	chr11	78324131	78324331	+	1	NA	NA	NA	33	NM_009657	11676	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0.015000	0.592040	
mm_101710.1	chr11	42000751	42000951	-	1	NA	NA	NA	-137	NM_008073	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding	0.005000	0.432836	
mm_164619.1	chr17	31162671	31162871	-	1	NA	NA	NA	2282	NM_009362	21784	Mm.2854	NM_009362	ENSMUSG00000024032	Tff1	Bcei|PS2	trefoil factor 1	protein-coding	0.030000	0.547264	
mm_171355.1	chr4	110718135	110718335	-	1	NA	NA	NA	320537	NM_030231	78933	Mm.435620	NM_030231	ENSMUSG00000061298	Agbl4	4930578N11Rik|4931433A01Rik	ATP/GTP binding protein-like 4	protein-coding	0.025000	0.407960	
mm_118892.1	chr14	26630851	26631051	+	1	NA	NA	NA	-7246	NM_007479	11843	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.000000	0.268657	-2(ACTTTTATATGC,+,0.00)
mm_49054.1	chr6	5048181	5048381	+	1	NA	NA	NA	144961	NM_181595	243725	Mm.332901	NM_181595	ENSMUSG00000032827	Ppp1r9a	2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|mKIAA1222|neurabin-I	protein phosphatase 1, regulatory (inhibitor) subunit 9A	protein-coding	0.010000	0.452736	
mm_50322.1	chr6	48073539	48073739	+	1	NA	NA	NA	12954	NM_001347142	69228	Mm.207555	NM_001163475	ENSMUSG00000057691	Zfp746	2810407L07Rik|AI317225|Znf746	zinc finger protein 746	protein-coding	0.010000	0.502488	
mm_115663.1	chr13	12461468	12461668	-	1	NA	NA	NA	170	NM_001291060	56048	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.095000	0.691542	
mm_140026.1	chr17	73949669	73949869	+	1	NA	NA	NA	427	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.010000	0.472637	
mm_31753.1	chr4	63345949	63346149	+	1	NA	NA	NA	1493	NM_008768	18405	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding	0.005000	0.502488	
mm_130332.1	chr15	97721007	97721207	-	1	NA	NA	NA	43	NM_008902	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.005000	0.442786	-86(CTCTTAATAGGG,+,0.00)
mm_164815.1	chr18	34032369	34032569	+	1	NA	NA	NA	-25263	NM_013512	13824	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	0.025000	0.477612	
mm_90325.1	chr10	127075195	127075395	+	1	NA	NA	NA	-3612	NM_001301014	216439	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.030000	0.606965	
mm_144269.1	chr18	11058922	11059122	+	1	NA	NA	NA	-6455	NR_105023	68434	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0.060000	0.636816	
mm_69791.1	chr7	141100439	141100639	-	1	NA	NA	NA	7	NM_023059	24058	Mm.38017	NM_023059	ENSMUSG00000025494	Sigirr	AI256711|TIR8	single immunoglobulin and toll-interleukin 1 receptor (TIR) domain	protein-coding	0.080000	0.651741	
mm_92773.1	chr10	81167744	81167944	-	1	NA	NA	NA	-124	NM_021501	59004	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0.110000	0.661692	
mm_145239.1	chr18	50395040	50395240	+	1	NA	NA	NA	116771	NM_001004061	225497	Mm.329435	NM_001004061	ENSMUSG00000035420	Fam170a	Gm93|Znfd	family with sequence similarity 170, member A	protein-coding	0.005000	0.457711	
mm_11142.1	chr2	28496839	28497039	+	1	NA	NA	NA	48	NM_139197	227671	Mm.484270	NM_139197	ENSMUSG00000026829	Gbgt1	Fgs|Fs	globoside alpha-1,3-N-acetylgalactosaminyltransferase 1	protein-coding	0.020000	0.567164	
mm_102222.1	chr11	54909837	54910037	-	1	NA	NA	NA	7083	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.010000	0.492537	
mm_126595.1	chr15	82358192	82358392	+	1	NA	NA	NA	-4001	NM_025987	67130	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	0.005000	0.328358	
mm_19283.1	chr2	89946880	89947080	-	1	NA	NA	NA	-2867	NM_146341	258338	Mm.354180	NM_146341	ENSMUSG00000068806	Olfr1259	MOR232-9	olfactory receptor 1259	protein-coding	0.000000	0.452736	-29(GCTTTAAGGCAC,+,0.00)
mm_82301.1	chr9	7864644	7864844	-	1	NA	NA	NA	8426	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.000000	0.427861	
mm_151035.1	chr19	47016728	47016928	+	1	NA	NA	NA	-1639	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.000000	0.308458	
mm_26364.1	chr3	142560021	142560221	+	1	NA	NA	NA	69	NM_001289492	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.015000	0.502488	
mm_11844.1	chr2	45196669	45196869	+	1	NA	NA	NA	-83490	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.010000	0.407960	
mm_49263.1	chr6	17464003	17464203	+	1	NA	NA	NA	146	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.115000	0.711443	
mm_46873.1	chr5	113832438	113832638	-	1	NA	NA	NA	-2037	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.020000	0.601990	
mm_9236.1	chr1	171287854	171288054	-	1	NA	NA	NA	7	NM_013919	30941	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	0.105000	0.706468	
mm_115469.1	chr13	119462681	119462881	+	1	NA	NA	NA	22	NM_026127	67392	Mm.390641	NM_026127	ENSMUSG00000062822	4833420G17Rik	2210017J06Rik|5730533D17Rik|AW107518|C85193	RIKEN cDNA 4833420G17 gene	protein-coding	0.075000	0.557214	
mm_161964.1	chr19	8713761	8713961	-	1	NA	NA	NA	36	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.075000	0.626866	-77(CTCTTTAAGAGG,-,0.00),-76(TCTTTAAGAGGC,+,0.00)
mm_1867.1	chr1	85276823	85277023	+	1	NA	NA	NA	-6357	NM_001037909	620078	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik|OTTMUSG00000029174	RIKEN cDNA C130026I21 gene	protein-coding	0.025000	0.502488	
mm_30530.1	chr4	3090689	3090889	+	1	NA	NA	NA	-81294	NM_001167534	100312470	Mm.480297	NM_001167534	ENSMUSG00000094798	Vmn1r2	Gm11776|OTTMUSG00000004179	vomeronasal 1 receptor 2	protein-coding	0.035000	0.353234	
mm_6761.1	chr1	84102207	84102407	-	1	NA	NA	NA	116654	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.437811	
mm_153700.1	chr19	44397478	44397678	-	1	NA	NA	NA	10131	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.000000	0.407960	
mm_75270.1	chr8	40854999	40855199	-	1	NA	NA	NA	-7268	NM_007514	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.020000	0.507463	
mm_83041.1	chr9	37348309	37348509	-	1	NA	NA	NA	-17	NM_001081429	245902	Mm.390150	NM_001081429	ENSMUSG00000034303	Ccdc15	A630039F14Rik|D030074L19	coiled-coil domain containing 15	protein-coding	0.080000	0.631841	
mm_4887.1	chr1	188261923	188262123	+	1	NA	NA	NA	-815	NM_021408	22283	Mm.331238	NM_021408	ENSMUSG00000026609	Ush2a	A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Usherin|Ushrn	Usher syndrome 2A	protein-coding	0.005000	0.527363	
mm_65641.1	chr7	27970678	27970878	-	1	NA	NA	NA	8379	NM_001081021	338354	Mm.389873	NM_001081021	ENSMUSG00000063047	Zfp780b	B230208L21Rik	zinc finger protein 780B	protein-coding	0.005000	0.273632	
mm_20798.1	chr2	144260579	144260779	-	1	NA	NA	NA	5523	NR_030762	100313519	Mm.453538	NR_030762	ENSMUSG00000077714	Snord17	MBI-43	small nucleolar RNA, C/D box 17	snoRNA	0.010000	0.398010	8(GCATAAAGAGGC,+,0.00)
mm_10422.1	chr2	13581515	13581715	+	1	NA	NA	NA	7304	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.005000	0.328358	
mm_54826.1	chr6	42585647	42585847	-	1	NA	NA	NA	11625	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.437811	
mm_51155.1	chr6	70721613	70721813	+	1	NA	NA	NA	70462	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.417910	
mm_146565.1	chr18	6490739	6490939	-	1	NA	NA	NA	18	NM_001276350	13831	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1 (Drosophila)	protein-coding	0.115000	0.691542	
mm_55372.1	chr6	57825055	57825255	-	1	NA	NA	NA	-30	NM_146168	232023	Mm.24642	NM_146168	ENSMUSG00000037788	Vopp1	AW146242|Ecop	vesicular, overexpressed in cancer, prosurvival protein 1	protein-coding	0.145000	0.726368	
mm_41167.1	chr5	87964304	87964504	+	1	NA	NA	NA	14947	NR_045924	73471	Mm.396240	NR_045924	ENSMUSG00000099605	1700066N21Rik	-	RIKEN cDNA 1700066N21 gene	ncRNA	0.005000	0.457711	
mm_72388.1	chr8	81766236	81766436	+	1	NA	NA	NA	423774	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.020000	0.467662	
mm_110987.1	chr12	77124342	77124542	-	1	NA	NA	NA	-113662	NM_001252614	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.005000	0.522388	
mm_169627.1	chr15	41921938	41922138	+	1	NA	NA	NA	-52318	NM_175456	223513	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0.015000	0.412935	
mm_155636.1	chrX	85048221	85048421	+	1	NA	NA	NA	26	NM_001314034	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.100000	0.746269	
mm_125541.1	chr15	58141339	58141539	+	1	NA	NA	NA	73	NM_001326599	76773	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	0.085000	0.686567	
mm_92667.1	chr10	80433535	80433735	-	1	NA	NA	NA	18	NM_001164150	21423	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.135000	0.751244	
mm_75459.1	chr8	47714400	47714600	-	1	NA	NA	NA	-569	NM_172407	70925	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.070000	0.542289	
mm_119922.1	chr14	54962923	54963123	+	1	NA	NA	NA	3584	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.030000	0.537313	
mm_137294.1	chr17	24779638	24779838	+	1	NA	NA	NA	-24644	NM_029197	75178	Mm.52592	NM_029197	ENSMUSG00000024155	Meiob	4930528F23Rik|MLZ-675	meiosis specific with OB domains	protein-coding	0.015000	0.482587	
mm_59630.1	chr7	28156632	28156832	+	1	NA	NA	NA	-13016	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.025000	0.587065	
mm_56127.1	chr6	87534825	87535025	-	1	NA	NA	NA	-1666	NM_001286610	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.010000	0.462687	
mm_37319.1	chr4	119383656	119383856	-	1	NA	NA	NA	78	NM_028506	73332	Mm.425204	NM_028506	ENSMUSG00000028637	Ccdc30	1700001O02Rik|1700041C02Rik|1700111D19Rik|4930445I03Rik	coiled-coil domain containing 30	protein-coding	0.020000	0.542289	
mm_116914.1	chr13	55508213	55508413	-	1	NA	NA	NA	-621	NR_105910	102465570		NR_105910	ENSMUSG00000099096	Mir6945	Gm27779|mmu-mir-6945	microRNA 6945	ncRNA	0.050000	0.681592	
mm_73186.1	chr8	95335217	95335417	+	1	NA	NA	NA	3033	NM_133954	101985	Mm.29069	NM_133954	ENSMUSG00000031792	Usb1	AA960436	U6 snRNA biogenesis 1	protein-coding	0.005000	0.417910	
mm_143723.1	chr17	81375892	81376092	-	1	NA	NA	NA	-310907	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.015000	0.437811	
mm_851.1	chr1	52119385	52119585	+	1	NA	NA	NA	47	NM_001205314	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.075000	0.631841	
mm_132745.1	chr16	44142525	44142725	+	1	NA	NA	NA	2816	NM_028108	72117	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	0.010000	0.437811	-5(TTTTTTATGGAC,+,0.00)
mm_32975.1	chr4	120097632	120097832	+	1	NA	NA	NA	-63474	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.015000	0.616915	
mm_79924.1	chr9	65630511	65630711	+	1	NA	NA	NA	29	NM_028030	71973	Mm.29148	NM_028030	ENSMUSG00000032387	Rbpms2	2400008B06Rik|AI316523	RNA binding protein with multiple splicing 2	protein-coding	0.135000	0.761194	-34(GCCCTGAAAAGC,-,0.00)
mm_55102.1	chr6	49881972	49882172	-	1	NA	NA	NA	59362	NM_023456	109648	Mm.154796	NM_023456	ENSMUSG00000029819	Npy	0710005A05Rik	neuropeptide Y	protein-coding	0.000000	0.542289	
mm_79227.1	chr9	50239631	50239831	+	1	NA	NA	NA	-6549	NR_131161	71873		NR_131161	ENSMUSG00000110916	2310003N18Rik	-	RIKEN cDNA 2310003N18 gene	ncRNA	0.010000	0.527363	
mm_150232.1	chr19	33976625	33976825	+	1	NA	NA	NA	15477	NM_026334	67717	Mm.329816	NM_026334	ENSMUSG00000024768	Lipf	2310051B21Rik|AV082900	lipase, gastric	protein-coding	0.010000	0.358209	
mm_135598.1	chr16	50732641	50732841	-	1	NA	NA	NA	32	NR_028300	68190	Mm.139089	NR_028300		Dubr	5330426P16Rik|Dum	Dppa2 upstream binding RNA	ncRNA	0.095000	0.626866	
mm_28587.1	chr3	94377187	94377387	-	1	NA	NA	NA	-145	NM_001293734	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.040000	0.606965	
mm_30949.1	chr4	33132457	33132657	+	1	NA	NA	NA	1	NM_008075	14408	Mm.14116	NM_008075	ENSMUSG00000028280	Gabrr1	GABA-C	gamma-aminobutyric acid (GABA) C receptor, subunit rho 1	protein-coding	0.045000	0.507463	17(GCCTTAAGAGAG,+,0.00)
mm_105610.1	chr11	106783253	106783453	-	1	NA	NA	NA	-594	NR_037224	100526469		NR_037224	ENSMUSG00000093273	Mir3064	mir-3064|mmu-mir-3064	microRNA 3064	ncRNA	0.020000	0.472637	
mm_138727.1	chr17	36942932	36943132	+	1	NA	NA	NA	-19	NM_001099632	386454	Mm.105324	NM_001099632	ENSMUSG00000036492	Rnf39	BC038661|Gm1786|Gm1787|Gm320|LIRF	ring finger protein 39	protein-coding	0.090000	0.686567	
mm_563.1	chr1	38033971	38034171	+	1	NA	NA	NA	36061	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.015000	0.487562	
mm_50268.1	chr6	45060019	45060219	+	1	NA	NA	NA	58	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.020000	0.557214	
mm_118989.1	chr14	28505377	28505577	+	1	NA	NA	NA	4	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.035000	0.542289	
mm_19566.1	chr2	101628842	101629042	-	1	NA	NA	NA	44	NM_026592	68170	Mm.31263	NM_026592	ENSMUSG00000027165	B230118H07Rik	NWC	RIKEN cDNA B230118H07 gene	protein-coding	0.050000	0.517413	-26(CCTTATAGGCTG,+,0.00)
mm_58035.1	chr6	136781662	136781862	-	1	NA	NA	NA	-20	NM_001127318	14917	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	0.025000	0.532338	
mm_48036.1	chr5	136276159	136276359	-	1	NA	NA	NA	-31319	NM_018825	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.005000	0.407960	
mm_55159.1	chr6	51681843	51682043	-	1	NA	NA	NA	137420	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.010000	0.437811	-35(ACTTTTAAAGTA,+,0.00)
mm_104485.1	chr11	95712663	95712863	-	1	NA	NA	NA	-9	NR_045780	432396	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	0.110000	0.746269	
mm_19551.1	chr2	98666226	98666426	-	1	NA	NA	NA	1198669	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.020000	0.328358	
mm_171171.1	chr3	30969296	30969496	-	1	NA	NA	NA	19	NM_001165954	241915	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic-like 3 (Drosophila)	protein-coding	0.080000	0.641791	
mm_90726.1	chr10	5194632	5194832	-	1	NA	NA	NA	-25	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.050000	0.621891	
mm_167545.1	chr9	26923094	26923294	-	1	NA	NA	NA	-113	NM_001281475	382064	Mm.335028	NM_001177509	ENSMUSG00000079644	Gm1110	-	predicted gene 1110	protein-coding	0.020000	0.527363	
mm_31615.1	chr4	59035111	59035311	+	1	NA	NA	NA	55	NM_025277	14700	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	0.130000	0.771144	
mm_79329.1	chr9	53333106	53333306	+	1	NA	NA	NA	31536	NM_176846	320051	Mm.277540	NM_176846	ENSMUSG00000034584	Exph5	AC079869.22gm5|B130009M24Rik|E030050P12|Kiaa0624|Slac2b|slac2-b	exophilin 5	protein-coding	0.000000	0.477612	
mm_8205.1	chr1	138123575	138123775	-	1	NA	NA	NA	51451	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.358209	
mm_141519.1	chr17	31684231	31684431	-	1	NA	NA	NA	6400	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.030000	0.512438	
mm_89386.1	chr10	89750883	89751083	+	1	NA	NA	NA	5992	NM_029166	75089	Mm.268922	NM_029166	ENSMUSG00000019951	Uhrf1bp1l	2010319N22Rik|4930506D01Rik|AA589495|C80672|E030041M21Rik|mKIAA0701	UHRF1 (ICBP90) binding protein 1-like	protein-coding	0.005000	0.293532	
mm_117455.1	chr13	74808667	74808867	-	1	NA	NA	NA	-7	NM_001301153	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.010000	0.562189	
mm_157277.1	chrX	20617176	20617376	-	1	NA	NA	NA	-227	NM_001167775	236732	Mm.279194	NM_145627	ENSMUSG00000031060	Rbm10	E430039K10Rik	RNA binding motif protein 10	protein-coding	0.090000	0.636816	
mm_48557.1	chr5	143112914	143113114	-	1	NA	NA	NA	6	NM_207110	108086	Mm.381440	NM_080561	ENSMUSG00000045078	Rnf216	2810055G22Rik|AI647468|AU019462|C86502|F830018F18Rik|TRIAD3|UIP83|Ubce7ip1	ring finger protein 216	protein-coding	0.135000	0.701493	
mm_3264.1	chr1	136364879	136365079	+	1	NA	NA	NA	-18875	NM_001347110	67886	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	0.070000	0.641791	
mm_151475.1	chr19	58673646	58673846	+	1	NA	NA	NA	3381	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.040000	0.487562	
mm_79431.1	chr9	56027396	56027596	+	1	NA	NA	NA	-140	NR_033529	665005	Mm.384788	NR_033529		Gm7444	EG665005	ring finger protein 19A pseudogene	pseudo	0.070000	0.626866	
mm_79359.1	chr9	54286294	54286494	+	1	NA	NA	NA	-92	NM_177350	235379	Mm.123549	NM_177350	ENSMUSG00000046167	Gldn	CRG-L2|Clom|Colm|Crgl2|Crlg2	gliomedin	protein-coding	0.055000	0.656716	
mm_32980.1	chr4	120134837	120135037	+	1	NA	NA	NA	-26269	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.020000	0.457711	
mm_38397.1	chr4	138863372	138863572	-	1	NA	NA	NA	-3	NM_001122954	18784	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	0.030000	0.547264	
mm_30656.1	chr4	8913729	8913929	+	1	NA	NA	NA	223423	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.010000	0.562189	
mm_67236.1	chr7	75308263	75308463	-	1	NA	NA	NA	23	NM_001109753	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.040000	0.492537	
mm_108974.1	chr12	102612583	102612783	+	1	NA	NA	NA	57742	NM_007693	12652	Mm.4137	NM_007693	ENSMUSG00000021194	Chga	ChrA|cgA	chromogranin A	protein-coding	0.000000	0.527363	
mm_144239.1	chr18	10725417	10725617	+	1	NA	NA	NA	-108	NM_144860	225164	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0.085000	0.631841	
mm_24775.1	chr3	95531821	95532021	+	1	NA	NA	NA	5135	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.005000	0.487562	
mm_99274.1	chr11	101259134	101259334	+	1	NA	NA	NA	-1333	NM_175638	69847	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	0.015000	0.482587	45(GGGTCTATAAAC,-,0.00)
mm_91755.1	chr10	50592275	50592475	-	1	NA	NA	NA	-294	NM_198007	77987	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.030000	0.442786	
mm_25764.1	chr3	125404002	125404202	+	1	NA	NA	NA	11	NM_022565	64580	Mm.444289	NM_022565	ENSMUSG00000027971	Ndst4	4930439H17Rik	N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4	protein-coding	0.020000	0.552239	
mm_112245.1	chr12	113482532	113482732	-	1	NA	NA	NA	-6933	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.482587	
mm_147267.1	chr18	38918576	38918776	-	1	NA	NA	NA	23	NM_010197	14164	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0.030000	0.606965	
mm_81876.1	chr9	119162532	119162732	+	1	NA	NA	NA	-5539	NM_146230	235674	Mm.379402	NM_146230	ENSMUSG00000010651	Acaa1b	-	acetyl-Coenzyme A acyltransferase 1B	protein-coding	0.075000	0.507463	
mm_62885.1	chr7	114846214	114846414	+	1	NA	NA	NA	100548	NM_173767	233752	Mm.83037	NM_173767	ENSMUSG00000048782	Insc	3830422K02Rik|C730020D23	inscuteable homolog (Drosophila)	protein-coding	0.025000	0.527363	
mm_99637.1	chr11	105190706	105190906	+	1	NA	NA	NA	9279	NM_001294329	24086	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	0.000000	0.283582	
mm_40873.1	chr5	74092988	74093188	+	1	NA	NA	NA	28	NR_145131	70036	Mm.46547	NR_015531	ENSMUSG00000053656	Dancr	2700023E23Rik	differentiation antagonizing non-protein coding RNA	ncRNA	0.070000	0.661692	
mm_11152.1	chr2	28533353	28533553	+	1	NA	NA	NA	-11	NM_001145835	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.115000	0.766169	
mm_116317.1	chr13	37477757	37477957	-	1	NA	NA	NA	132512	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.035000	0.597015	
mm_14530.1	chr2	132781323	132781523	+	1	NA	NA	NA	145	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.065000	0.616915	
mm_25380.1	chr3	107212677	107212877	+	1	NA	NA	NA	8955	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.517413	
mm_122174.1	chr14	31529531	31529731	-	1	NA	NA	NA	34552	NM_028932	74427	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	0.015000	0.522388	
mm_173091.1	chrX	150738806	150739006	-	1	NA	NA	NA	74797	NM_001199246	80884	Mm.22575	NM_030700	ENSMUSG00000025268	Maged2	4833439A22Rik|Mage-d2|ORF1	melanoma antigen, family D, 2	protein-coding	0.010000	0.527363	
mm_136041.1	chr16	78267735	78267935	-	1	NA	NA	NA	-12381	NR_045698	100503619	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.005000	0.502488	
mm_160659.1	chr9	119378097	119378297	+	1	NA	NA	NA	20816	NM_001199568	102448	Mm.219497	NM_001033209	ENSMUSG00000035769	Xylb	AI132223|AI327421	xylulokinase homolog (H. influenzae)	protein-coding	0.010000	0.527363	
mm_145098.1	chr18	43265692	43265892	+	1	NA	NA	NA	58095	NM_178749	269019	Mm.150401	NM_178749	ENSMUSG00000039954	Stk32a	A930015B13Rik|YANK1	serine/threonine kinase 32A	protein-coding	0.000000	0.452736	
mm_165271.1	chr2	75704505	75704705	-	1	NA	NA	NA	58	NR_132727	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.055000	0.656716	
mm_39337.1	chr5	8799679	8799879	+	1	NA	NA	NA	1632	NM_011075	18669	Mm.146649	NM_011075	ENSMUSG00000028970	Abcb1b	Abcb1|Mdr1|Mdr1b|Pgy-1|Pgy1|mdr	ATP-binding cassette, sub-family B (MDR/TAP), member 1B	protein-coding	0.010000	0.348259	
mm_119067.1	chr14	30825561	30825761	+	1	NA	NA	NA	67	NM_028839	69179	Mm.143025	NM_028839	ENSMUSG00000006526	Tmem110	1810038N08Rik|2310014H19Rik|AW554125|STIMATE	transmembrane protein 110	protein-coding	0.150000	0.746269	
mm_132953.1	chr16	49955693	49955893	+	1	NA	NA	NA	-24667	NR_045001	628951	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0.005000	0.477612	
mm_123134.1	chr14	56551955	56552155	-	1	NA	NA	NA	19791	NM_001014996	219103	Mm.212525	NM_001014996	ENSMUSG00000064128	Cenpj	4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4	centromere protein J	protein-coding	0.005000	0.432836	
mm_102250.1	chr11	55123872	55124072	-	1	NA	NA	NA	25987	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.030000	0.502488	
mm_154852.1	chrX	20549612	20549812	+	1	NA	NA	NA	-106	NM_009060	19733	Mm.2118	NM_009060	ENSMUSG00000023070	Rgn	AI265316|GNL|SMP30	regucalcin	protein-coding	0.010000	0.597015	43(TGCCATAAAAAG,-,0.00),45(CCATAAAAAGCA,+,0.00)
mm_145613.1	chr18	61105500	61105700	+	1	NA	NA	NA	28	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.000000	0.522388	
mm_76130.1	chr8	80880218	80880418	-	1	NA	NA	NA	161	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.120000	0.791045	
mm_47379.1	chr5	122989170	122989370	-	1	NA	NA	NA	-84	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.090000	0.686567	
mm_81264.1	chr9	108045296	108045496	+	1	NA	NA	NA	-3894	NM_177910	331026	Mm.22554	NM_177910	ENSMUSG00000070284	Gmppb	AI317178|E430010H19	GDP-mannose pyrophosphorylase B	protein-coding	0.000000	0.467662	
mm_171222.1	chr3	60489927	60490127	-	1	NA	NA	NA	-11152	NM_001253711	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.035000	0.477612	11(CTCTTTAAAGAG,+,0.00),11(CTCTTTAAAGAG,-,0.00),13(CTTTAAAGAGGG,+,0.00)
mm_164743.1	chr17	73871106	73871306	-	1	NA	NA	NA	66365	NM_020578	57440	Mm.18526	NM_020578	ENSMUSG00000024065	Ehd3	Ehd2	EH-domain containing 3	protein-coding	0.015000	0.547264	
mm_122923.1	chr14	54960918	54961118	-	1	NA	NA	NA	5589	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.020000	0.572139	
mm_162602.1	chr1	183194501	183194701	-	1	NA	NA	NA	26928	NM_001278218	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0.005000	0.348259	
mm_137269.1	chr17	24698220	24698420	+	1	NA	NA	NA	2086	NM_027988	71893	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	0.020000	0.517413	
mm_33637.1	chr4	132974039	132974239	+	1	NA	NA	NA	44	NM_010208	14191	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.050000	0.606965	
mm_45521.1	chr5	72616680	72616880	-	1	NA	NA	NA	25972	NM_007723	12788	Mm.436652	NM_007723	ENSMUSG00000067220	Cnga1	Cncg	cyclic nucleotide gated channel alpha 1	protein-coding	0.005000	0.437811	-77(GTCTTTTAAAGA,-,0.00),-76(TCTTTTAAAGAC,+,0.00)
mm_57068.1	chr6	122577874	122578074	-	1	NA	NA	NA	24165	NM_009645	11628	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.010000	0.417910	
mm_78863.1	chr9	44398281	44398481	+	1	NA	NA	NA	205	NM_008063	14385	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0.010000	0.537313	-62(GGCTATAAAGAG,-,0.00)
mm_89864.1	chr10	108162175	108162375	+	1	NA	NA	NA	-125	NM_027892	17931	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.135000	0.731343	
mm_60031.1	chr7	30976988	30977188	+	1	NA	NA	NA	45	NM_175240	76415	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.015000	0.532338	
mm_170134.1	chr17	39847430	39847630	+	1	NA	NA	NA	4533	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.065000	0.562189	
mm_33106.1	chr4	124708252	124708452	+	1	NA	NA	NA	-6509	NM_029157	75062	Mm.25779	NM_029157	ENSMUSG00000028902	Sf3a3	4930512K19Rik|60kDa	splicing factor 3a, subunit 3	protein-coding	0.005000	0.402985	
mm_153952.1	chr19	47691762	47691962	-	1	NA	NA	NA	180	NM_007732	12821	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	0.020000	0.502488	
mm_125172.1	chr15	31350103	31350303	+	1	NA	NA	NA	17556	NM_001164441	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.015000	0.567164	-33(GAGCTTAAAAGC,-,0.00)
mm_35679.1	chr4	43661916	43662116	-	1	NA	NA	NA	-5571	NM_026871	68917	Mm.25285	NM_026871	ENSMUSG00000028470	Hint2	1190005L05Rik	histidine triad nucleotide binding protein 2	protein-coding	0.010000	0.512438	
mm_115319.1	chr13	112373288	112373488	+	1	NA	NA	NA	84870	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.005000	0.447761	-100(TCCTTAAAAGCC,+,0.00),-99(CCTTAAAAGCCA,+,0.00)
mm_122098.1	chr14	30912618	30912818	-	1	NA	NA	NA	10869	NM_008407	16426	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	0.030000	0.577114	
mm_73102.1	chr8	94601866	94602066	+	1	NA	NA	NA	25	NM_026274	67610	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	0.075000	0.626866	
mm_28756.1	chr3	95855700	95855900	-	1	NA	NA	NA	-47	NM_027541	70767	Mm.279872	NM_027541	ENSMUSG00000015748	Prpf3	3632413F13Rik	pre-mRNA processing factor 3	protein-coding	0.125000	0.676617	
mm_152191.1	chr19	7469506	7469706	-	1	NA	NA	NA	-8912	NR_028566	100216530	Mm.453052	NR_028566	ENSMUSG00000064899	Snord118	MBI-34	small nucleolar RNA, C/D box 118	snoRNA	0.000000	0.417910	
mm_127635.1	chr15	102471092	102471292	+	1	NA	NA	NA	560	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.085000	0.706468	
mm_87607.1	chr10	57784827	57785027	+	1	NA	NA	NA	4	NM_021272	12140	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.030000	0.482587	
mm_166003.1	chr4	116053762	116053962	-	1	NA	NA	NA	14	NM_028142	72181	Mm.282560	NM_028142	ENSMUSG00000028706	Nsun4	2310010O12Rik|2810405F18Rik|AI507900|Shtap	NOL1/NOP2/Sun domain family, member 4	protein-coding	0.085000	0.636816	
mm_86682.1	chr10	18360903	18361103	+	1	NA	NA	NA	-46672	NM_173390	215819	Mm.297971	NM_173390	ENSMUSG00000039835	Nhsl1	5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357	NHS-like 1	protein-coding	0.025000	0.437811	
mm_42566.1	chr5	117146655	117146855	+	1	NA	NA	NA	13167	NM_183306	330177	Mm.24343	NM_183306	ENSMUSG00000061288	Taok3	2900006A08Rik|A130052D22|A430105I05Rik	TAO kinase 3	protein-coding	0.005000	0.318408	
mm_93949.1	chr10	127243633	127243833	-	1	NA	NA	NA	19630	NM_008447	16572	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	0.030000	0.577114	
mm_69257.1	chr7	127876026	127876226	-	1	NA	NA	NA	697	NM_146259	244219	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.110000	0.696517	
mm_119287.1	chr14	34378745	34378945	+	1	NA	NA	NA	3341	NM_153127	105450	Mm.272673	NM_153127	ENSMUSG00000041445	Mmrn2	AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1	multimerin 2	protein-coding	0.005000	0.587065	
mm_124202.1	chr14	98169679	98169879	-	1	NA	NA	NA	-14	NM_007826	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.030000	0.512438	
mm_31002.1	chr4	40160199	40160399	+	1	NA	NA	NA	17034	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.005000	0.333333	
mm_124801.1	chr15	8445468	8445668	+	1	NA	NA	NA	-1105	NM_201232	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.075000	0.577114	
mm_143932.1	chr17	86145062	86145262	-	1	NA	NA	NA	13	NM_030133	78586	Mm.146236	NM_030133	ENSMUSG00000024135	Srbd1	AI461933|C85414|D530025C17Rik	S1 RNA binding domain 1	protein-coding	0.095000	0.611940	
mm_65709.1	chr7	28378047	28378247	-	1	NA	NA	NA	1081	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.065000	0.587065	
mm_81380.1	chr9	108914554	108914754	+	1	NA	NA	NA	35	NM_027066	69384	Mm.158271	NM_027066	ENSMUSG00000025652	Tmem89	1700024B07Rik	transmembrane protein 89	protein-coding	0.020000	0.597015	
mm_99641.1	chr11	105292526	105292726	+	1	NA	NA	NA	-20	NM_008626	17534	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0.075000	0.701493	
mm_80456.1	chr9	77982760	77982960	+	1	NA	NA	NA	65495	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.045000	0.547264	
mm_84943.1	chr9	82975384	82975584	-	1	NA	NA	NA	5	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.130000	0.736318	
mm_53671.1	chr6	141683134	141683334	+	1	NA	NA	NA	53716	NM_020495	28253	Mm.272223	NM_020495	ENSMUSG00000030236	Slco1b2	7330442B20Rik|OATP-C|OATP2|Oatp1b2|Oatp4|Slc21a10|Slc21a6|lst-1|mlst-1	solute carrier organic anion transporter family, member 1b2	protein-coding	0.015000	0.383085	
mm_134190.1	chr16	10971189	10971389	-	1	NA	NA	NA	21832	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.005000	0.407960	
mm_154985.1	chrX	38189641	38189841	+	1	NA	NA	NA	-52	NM_020256	56805	Mm.391248	NM_020256	ENSMUSG00000048047	Zbtb33	AW260253|E130014G12Rik|Kaiso|Znf-kaiso	zinc finger and BTB domain containing 33	protein-coding	0.145000	0.696517	65(ACATTTAAAGCG,+,0.00)
mm_121738.1	chr14	18331759	18331959	-	1	NA	NA	NA	-15	NM_009455	22194	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	0.120000	0.746269	
mm_131016.1	chr15	103563239	103563439	-	1	NA	NA	NA	1742	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.005000	0.512438	
mm_37088.1	chr4	116464113	116464313	-	1	NA	NA	NA	-32	NM_008641	17776	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0.200000	0.840796	
mm_155783.1	chrX	96456275	96456475	+	1	NA	NA	NA	29	NM_001159627	15203	Mm.277092	NM_010417	ENSMUSG00000031209	Heph	C130006F04Rik|Cpl|mKIAA0698|sla	hephaestin	protein-coding	0.030000	0.502488	
mm_84383.1	chr9	65422766	65422966	-	1	NA	NA	NA	-93	NM_178933	330962	Mm.335247	NM_178933	ENSMUSG00000053862	Slc51b	Ostb	solute carrier family 51, beta subunit	protein-coding	0.010000	0.552239	
mm_41743.1	chr5	102768779	102768979	+	1	NA	NA	NA	69	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.025000	0.552239	
mm_46500.1	chr5	105133583	105133783	-	1	NA	NA	NA	5869	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.447761	
mm_80594.1	chr9	85845220	85845420	+	1	NA	NA	NA	2468	NM_001164792	21983	Mm.20864	NM_011627	ENSMUSG00000035274	Tpbg	5T4|AW495680|WAIF1	trophoblast glycoprotein	protein-coding	0.025000	0.437811	1(CCTTTACTAGGC,+,0.00)
mm_61020.1	chr7	49484176	49484376	+	1	NA	NA	NA	152559	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.025000	0.527363	
mm_132939.1	chr16	49856219	49856419	+	1	NA	NA	NA	665	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.040000	0.497512	
mm_4876.1	chr1	187898549	187898749	+	1	NA	NA	NA	-99178	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.000000	0.333333	
mm_72075.1	chr8	71559084	71559284	+	1	NA	NA	NA	-313	NM_001100462	434325	Mm.33613	NM_001100462	ENSMUSG00000043664	Tmem221	-	transmembrane protein 221	protein-coding	0.050000	0.597015	
mm_19853.1	chr2	113817876	113818076	-	1	NA	NA	NA	11115	NM_009162	20394	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	0.010000	0.492537	
mm_93076.1	chr10	89434585	89434785	-	1	NA	NA	NA	9282	NM_001284344	237436	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0.030000	0.532338	
mm_1058.1	chr1	58973504	58973704	+	1	NA	NA	NA	33	NM_172656	227154	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	0.095000	0.716418	
mm_14402.1	chr2	130048457	130048657	+	1	NA	NA	NA	-32149	NR_105757	102466628		NR_105757	ENSMUSG00000098347	Mir6339	Gm27848|mmu-mir-6339	microRNA 6339	ncRNA	0.005000	0.572139	
mm_21499.1	chr2	163472416	163472616	-	1	NA	NA	NA	-29	NR_028122	69517	Mm.395343	NR_028122	ENSMUSG00000053353	2310001K24Rik	-	RIKEN cDNA 2310001K24 gene	ncRNA	0.110000	0.701493	
mm_71011.1	chr8	31150333	31150533	+	1	NA	NA	NA	117	NR_103719	234138	Mm.349800	NM_144927	ENSMUSG00000031577	Tti2	-	TELO2 interacting protein 2	protein-coding	0.040000	0.417910	
mm_49961.1	chr6	40642892	40643092	+	1	NA	NA	NA	14161	NM_001171003	232714	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding	0.040000	0.467662	
mm_65090.1	chr7	19264719	19264919	-	1	NA	NA	NA	7035	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.030000	0.532338	
mm_49182.1	chr6	15184638	15184838	+	1	NA	NA	NA	-768	NM_212435	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.000000	0.422886	
mm_51241.1	chr6	71544255	71544455	+	1	NA	NA	NA	501	NM_025783	66700	Mm.181278	NM_025783	ENSMUSG00000053119	Chmp3	25.1|4921505F14Rik|9130011K15Rik|CGI-49|D6Ertd286e|NEDF|Vps24	charged multivesicular body protein 3	protein-coding	0.105000	0.716418	
mm_122091.1	chr14	30625366	30625566	-	1	NA	NA	NA	742	NM_011103	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.085000	0.736318	
mm_69331.1	chr7	128740352	128740552	-	1	NA	NA	NA	-23	NM_145955	210711	Mm.58882	NM_145955	ENSMUSG00000048170	Mcmbp	1110007A13Rik|AU017382|BC025641|MCM-BP	minichromosome maintenance complex binding protein	protein-coding	0.110000	0.741294	
mm_160068.1	chr7	5805375	5805575	-	1	NA	NA	NA	-30	NM_030742	81017	Mm.160382	NM_030742	ENSMUSG00000058631	Vmn1r63	V1R1|V1rd1|V3R1	vomeronasal 1 receptor 63	protein-coding	0.005000	0.442786	-27(CCCTTTATGAGC,+,0.00),-27(CCCTTTATGAGC,-,0.00)
mm_6455.1	chr1	74016536	74016736	-	1	NA	NA	NA	107811	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.025000	0.582090	
mm_101878.1	chr11	48902016	48902216	-	1	NA	NA	NA	36	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.005000	0.417910	-26(CTCCCTTTAAGG,-,0.00),-24(CCCTTTAAGGAC,+,0.00)
mm_72570.1	chr8	84127701	84127901	+	1	NA	NA	NA	1812	NM_001013384	244550	Mm.334654	NM_001013384	ENSMUSG00000012889	Podnl1	5832418A03Rik|Gm506	podocan-like 1	protein-coding	0.045000	0.626866	
mm_135737.1	chr16	55838553	55838753	-	1	NA	NA	NA	-12	NM_001159395	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.035000	0.552239	-34(CCCTATAAAGGA,+,0.00),-34(CCCTATAAAGGA,-,0.00)
mm_138159.1	chr17	34256616	34256816	+	1	NA	NA	NA	-6511	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.010000	0.492537	
mm_33297.1	chr4	128981343	128981543	+	1	NA	NA	NA	-11781	NM_016895	11637	Mm.29460	NM_016895	ENSMUSG00000028792	Ak2	Ak-2|D4Ertd220e	adenylate kinase 2	protein-coding	0.020000	0.542289	
mm_106550.1	chr11	120581493	120581693	-	1	NA	NA	NA	27	NM_133796	192662	Mm.30016	NM_133796	ENSMUSG00000025132	Arhgdia	5330430M07Rik|Gdi-1|Rho-GDI|RhoDGI|RhoGDI-1	Rho GDP dissociation inhibitor (GDI) alpha	protein-coding	0.180000	0.746269	
mm_13518.1	chr2	109929124	109929324	+	1	NA	NA	NA	11577	NM_172671	107515	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	0.000000	0.417910	
mm_87168.1	chr10	37137428	37137628	+	1	NA	NA	NA	1398	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.035000	0.482587	-88(GGGTTTAAAGGC,-,0.00)
mm_82988.1	chr9	36533706	36533906	-	1	NA	NA	NA	8157	NM_001033783	434396	Mm.118836	NM_001033783	ENSMUSG00000074448	Gm5615	EG434396|Pate-H|Pate9	predicted gene 5615	protein-coding	0.000000	0.452736	
mm_154135.1	chr19	57314975	57315175	-	1	NA	NA	NA	41115	NR_045319	78120	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	0.040000	0.582090	
mm_22526.1	chr3	7647006	7647206	+	1	NA	NA	NA	-33346	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.000000	0.358209	-89(GACTTTAAATGG,-,0.00)
mm_103949.1	chr11	84068263	84068463	-	1	NA	NA	NA	-6	NM_019819	56405	Mm.240885	NM_019819	ENSMUSG00000018648	Dusp14	1110014C10Rik|2310042C07Rik|D11Ertd395e|MKP-L|Mkp6	dual specificity phosphatase 14	protein-coding	0.185000	0.805970	
mm_117584.1	chr13	89658015	89658215	-	1	NA	NA	NA	84397	NM_001081249	13003	Mm.158700	NM_019389	ENSMUSG00000021614	Vcan	5430420N07Rik|9430051N09|Cspg2|DPEAAE|NG2|PG-M|PG-M(V0)|PG-M(V1)|hdf	versican	protein-coding	0.010000	0.288557	
mm_136560.1	chr17	3166925	3167125	+	1	NA	NA	NA	52053	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.005000	0.402985	
mm_15239.1	chr2	154656819	154657019	+	1	NA	NA	NA	-107	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.100000	0.656716	
mm_68977.1	chr7	126589071	126589271	-	1	NA	NA	NA	-3354	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.015000	0.462687	
mm_79881.1	chr9	65215264	65215464	+	1	NA	NA	NA	674	NM_177460	214424	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.090000	0.686567	
mm_90763.1	chr10	5550722	5550922	-	1	NA	NA	NA	-130	NM_001347732	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.035000	0.696517	
mm_153266.1	chr19	37077362	37077562	-	1	NA	NA	NA	-96381	NR_045329	319931	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.015000	0.502488	49(TGCTAGAAAAGG,-,0.00)
mm_48983.1	chr6	4755470	4755670	+	1	NA	NA	NA	8264	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.447761	
mm_89682.1	chr10	97517567	97517767	+	1	NA	NA	NA	35336	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.015000	0.368159	
mm_105576.1	chr11	106612942	106613142	-	1	NA	NA	NA	-112	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.150000	0.820896	
mm_77332.1	chr8	119544982	119545182	-	1	NA	NA	NA	13679	NM_001167910	56453	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	0.010000	0.343284	
mm_110823.1	chr12	72408840	72409040	-	1	NA	NA	NA	114	NM_001286448	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.025000	0.522388	
mm_97181.1	chr11	75533393	75533593	+	1	NA	NA	NA	1381	NM_001199283	215113	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.005000	0.557214	
mm_94003.1	chr10	127595418	127595618	-	1	NA	NA	NA	25630	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.035000	0.582090	
mm_132904.1	chr16	48872544	48872744	+	1	NA	NA	NA	36	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.015000	0.412935	4(GTGTATTAAAGC,-,0.00)
mm_53730.1	chr6	145121063	145121263	+	1	NA	NA	NA	-576	NM_008511	16970	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.050000	0.512438	
mm_67239.1	chr7	75308828	75309028	-	1	NA	NA	NA	226	NR_045814	68954	Mm.46960	NR_045812	ENSMUSG00000097247	1500012K07Rik	-	RIKEN cDNA 1500012K07 gene	ncRNA	0.105000	0.681592	
mm_130278.1	chr15	96699633	96699833	-	1	NA	NA	NA	-35	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.145000	0.716418	
mm_30685.1	chr4	11322139	11322339	+	1	NA	NA	NA	-108	NM_001081201	381510	Mm.331486	NM_001081201	ENSMUSG00000045205	Dpy19l4	Gm1023|Narg3	dpy-19-like 4 (C. elegans)	protein-coding	0.085000	0.701493	
mm_74948.1	chr8	25976591	25976791	-	1	NA	NA	NA	53	NM_029884	52120	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	0.130000	0.766169	
mm_103380.1	chr11	75414969	75415169	-	1	NA	NA	NA	7554	NM_011340	20317	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.030000	0.537313	
mm_140499.1	chr17	4030842	4031042	-	1	NA	NA	NA	52053	NR_045764	75815	Mm.183387	NR_045764		4930470H14Rik	-	RIKEN cDNA 4930470H14 gene	ncRNA	0.015000	0.407960	
mm_27277.1	chr3	41082843	41083043	-	1	NA	NA	NA	103	NM_027558	70804	Mm.40321	NM_027558	ENSMUSG00000049940	Pgrmc2	4631434O19Rik|5730409G06Rik|DG6|PMBP	progesterone receptor membrane component 2	protein-coding	0.115000	0.746269	
mm_108998.1	chr12	102993416	102993616	+	1	NA	NA	NA	44657	NM_001081017	217843	Mm.387073	NM_177621	ENSMUSG00000021198	Unc79	9030205A07Rik|Mlca3	unc-79 homolog (C. elegans)	protein-coding	0.010000	0.427861	
mm_149864.1	chr19	25127019	25127219	+	1	NA	NA	NA	-110083	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.020000	0.477612	-12(GGCCATAAGGGG,-,0.00)
mm_51080.1	chr6	66963208	66963408	+	1	NA	NA	NA	66417	NM_001177558	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.005000	0.278607	34(TCTTTTAAAATC,+,0.00)
mm_14214.1	chr2	127336059	127336259	+	1	NA	NA	NA	0	NM_010090	13537	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.105000	0.691542	-34(GAGTATTTAAGC,-,0.00)
mm_53791.1	chr6	146642511	146642711	+	1	NA	NA	NA	32	NM_025315	108098	Mm.26212	NM_025315	ENSMUSG00000030291	Med21	0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7	mediator complex subunit 21	protein-coding	0.070000	0.597015	
mm_172181.1	chr6	49236491	49236691	-	1	NA	NA	NA	-21637	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.030000	0.442786	
mm_49776.1	chr6	34907990	34908190	+	1	NA	NA	NA	2741	NM_001013366	101240	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.035000	0.517413	
mm_102614.1	chr11	62457824	62458024	-	1	NA	NA	NA	-536	NM_001039536	327942	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.055000	0.437811	
mm_64953.1	chr7	16401044	16401244	-	1	NA	NA	NA	-52	NM_198631	330474	Mm.333594	NM_198631	ENSMUSG00000059273	Zc3h4	Bwq1|Gm768|Kiaa1064-hp|mKIAA1064	zinc finger CCCH-type containing 4	protein-coding	0.095000	0.736318	
mm_73918.1	chr8	119699940	119700140	+	1	NA	NA	NA	31	NM_026922	69047	Mm.46251	NM_026922	ENSMUSG00000034112	Atp2c2	1810010G06Rik|Spca2|mKIAA0703	ATPase, Ca++ transporting, type 2C, member 2	protein-coding	0.095000	0.781095	
mm_173358.1	chrY	90819240	90819440	+	1	NA	NA	NA	20066	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.035000	0.567164	
mm_73460.1	chr8	106636192	106636392	+	1	NA	NA	NA	32942	NM_009864	12550	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	0.020000	0.432836	
mm_160158.1	chr7	44207312	44207512	+	1	NA	NA	NA	-21	NM_010915	18048	Mm.440886	NM_010915	ENSMUSG00000066513	Klk1b4	Ngfa|alpha-NGF|mGk-4	kallikrein 1-related pepidase b4	protein-coding	0.005000	0.562189	-31(GGGTTTTAAAGT,-,0.00)
mm_6165.1	chr1	65062008	65062208	-	1	NA	NA	NA	1332	NM_007776	12967	Mm.425031	NM_007776	ENSMUSG00000067299	Crygd	Aey4|Cryg-1|DGcry-1|Lop12	crystallin, gamma D	protein-coding	0.030000	0.552239	
mm_57191.1	chr6	122849516	122849716	-	1	NA	NA	NA	6541	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.000000	0.398010	
mm_25487.1	chr3	109267095	109267295	+	1	NA	NA	NA	-73488	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.020000	0.517413	
mm_40075.1	chr5	34336856	34337056	+	1	NA	NA	NA	24	NM_001304270	19822	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0.110000	0.656716	
mm_172533.1	chr7	88278077	88278277	+	1	NA	NA	NA	92	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.075000	0.631841	
mm_28066.1	chr3	84259828	84260028	-	1	NA	NA	NA	-149	NM_001271727	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.065000	0.547264	-88(CCTTTTCAGCGC,+,0.00)
mm_45221.1	chr5	53213360	53213560	-	1	NA	NA	NA	-8	NM_172710	231238	Mm.235020	NM_172710	ENSMUSG00000029189	Sel1l3	2310045A20Rik|AI429585|mKIAA0746	sel-1 suppressor of lin-12-like 3 (C. elegans)	protein-coding	0.160000	0.855721	
mm_89690.1	chr10	97565589	97565789	+	1	NA	NA	NA	188	NM_008524	17022	Mm.18888	NM_008524	ENSMUSG00000036446	Lum	Ldc|SLRR2D	lumican	protein-coding	0.020000	0.577114	
mm_140508.1	chr17	5492368	5492568	-	1	NA	NA	NA	-132	NM_146073	224454	Mm.487663	NM_146073	ENSMUSG00000034265	Zdhhc14	B530001K09Rik|New1cp	zinc finger, DHHC domain containing 14	protein-coding	0.075000	0.726368	
mm_129038.1	chr15	75012827	75013027	-	1	NA	NA	NA	-14896	NM_010738	110454	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	0.005000	0.427861	
mm_56392.1	chr6	95333893	95334093	-	1	NA	NA	NA	0	NR_033559	414067	Mm.355990	NR_033559	ENSMUSG00000068180	AY512915	-	cDNA sequence AY512915	ncRNA	0.010000	0.522388	
mm_105603.1	chr11	106779365	106779565	-	1	NA	NA	NA	50	NR_027785	50776	Mm.859	NM_015810	ENSMUSG00000020718	Polg2	-	polymerase (DNA directed), gamma 2, accessory subunit	protein-coding	0.085000	0.681592	
mm_154142.1	chr19	58123612	58123812	-	1	NA	NA	NA	72545	NR_049196	100885835		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0.005000	0.507463	
mm_28192.1	chr3	88141533	88141733	-	1	NA	NA	NA	-739	NM_001310587	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.035000	0.502488	
mm_6897.1	chr1	84741916	84742116	-	1	NA	NA	NA	-45795	NM_152915	227325	Mm.292560	NM_152915	ENSMUSG00000036766	Dner	A930026D19Rik|BET|Bret	delta/notch-like EGF repeat containing	protein-coding	0.005000	0.233831	
mm_168242.1	chr10	81863796	81863996	+	1	NA	NA	NA	-38	NM_001243067	73610	Mm.490466	NM_001243067	ENSMUSG00000096795	Zfp433	1700123A16Rik	zinc finger protein 433	protein-coding	0.045000	0.606965	
mm_85854.1	chr9	110728241	110728441	-	1	NA	NA	NA	14269	NM_001083936	19228	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.005000	0.472637	
mm_103204.1	chr11	70652120	70652320	-	1	NA	NA	NA	2430	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.025000	0.532338	
mm_145117.1	chr18	44334019	44334219	+	1	NA	NA	NA	45	NM_001033621	58916	Mm.143804	NM_001033621	ENSMUSG00000024471	Myot	5530402I04Rik|Ttid	myotilin	protein-coding	0.010000	0.482587	
mm_54869.1	chr6	42597735	42597935	-	1	NA	NA	NA	-463	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.412935	
mm_107944.1	chr12	71959558	71959758	+	1	NA	NA	NA	70115	NM_001286452	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.000000	0.388060	
mm_102835.1	chr11	69236937	69237137	-	1	NA	NA	NA	-15	NM_008192	14919	Mm.291816	NM_008192	ENSMUSG00000020890	Gucy2e	GC-E|GC1|ROS-GC1	guanylate cyclase 2e	protein-coding	0.040000	0.597015	
mm_40822.1	chr5	72644314	72644514	+	1	NA	NA	NA	-1662	NM_007723	12788	Mm.436652	NM_007723	ENSMUSG00000067220	Cnga1	Cncg	cyclic nucleotide gated channel alpha 1	protein-coding	0.000000	0.497512	-9(TCTTTTAGGGGA,+,0.00)
mm_5649.1	chr1	40516426	40516626	-	1	NA	NA	NA	1164	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.025000	0.457711	
mm_117780.1	chr13	97015210	97015410	-	1	NA	NA	NA	19052	NM_025585	66479	Mm.390629	NM_025585	ENSMUSG00000052075	1700029F12Rik	-	RIKEN cDNA 1700029F12 gene	protein-coding	0.020000	0.507463	
mm_83166.1	chr9	40489655	40489855	-	1	NA	NA	NA	-33991	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.020000	0.497512	
mm_57339.1	chr6	124746768	124746968	-	1	NA	NA	NA	-5789	NM_013535	14790	Mm.439877	NM_013535	ENSMUSG00000072772	Grcc10	2310033H05Rik|C10	gene rich cluster, C10 gene	protein-coding	0.015000	0.606965	
mm_3484.1	chr1	150105569	150105769	+	1	NA	NA	NA	5638	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.452736	
mm_71453.1	chr8	46521602	46521802	+	1	NA	NA	NA	-30367	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.005000	0.308458	
mm_70270.1	chr8	3596422	3596622	+	1	NA	NA	NA	9072	NM_001347111	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.000000	0.412935	
mm_11147.1	chr2	28513183	28513383	+	1	NA	NA	NA	116	NM_001145834	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.170000	0.796020	
mm_14767.1	chr2	145675382	145675582	+	1	NA	NA	NA	-25713	NR_033220	408057	Mm.486711	NR_033220	ENSMUSG00000087594	BC039771	-	cDNA sequence BC039771	ncRNA	0.045000	0.641791	
mm_71624.1	chr8	57436304	57436504	+	1	NA	NA	NA	-19519	NM_009136	20284	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.020000	0.502488	
mm_148108.1	chr18	74207681	74207881	-	1	NA	NA	NA	37	NM_001164355	66468	Mm.283406	NM_025581	ENSMUSG00000036223	Ska1	2810433K01Rik|AV117428	spindle and kinetochore associated complex subunit 1	protein-coding	0.120000	0.666667	
mm_43994.1	chr5	146832823	146833023	+	1	NA	NA	NA	33	NM_019647	19933	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	0.100000	0.636816	
mm_102199.1	chr11	54618933	54619133	-	1	NA	NA	NA	22887	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.005000	0.417910	
mm_45084.1	chr5	44073673	44073873	-	1	NA	NA	NA	20995	NM_001163581	19126	Mm.6250	NM_008935	ENSMUSG00000029086	Prom1	4932416E19Rik|AC133|CD133|Prom|Prom-1|Proml1	prominin 1	protein-coding	0.010000	0.462687	
mm_120205.1	chr14	61682493	61682693	+	1	NA	NA	NA	-220	NR_028264	668253	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.110000	0.771144	
mm_71477.1	chr8	46551952	46552152	+	1	NA	NA	NA	-17	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.080000	0.621891	
mm_159435.1	chr3	117360613	117360813	-	1	NA	NA	NA	163	NM_177664	229791	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	0.020000	0.502488	
mm_118358.1	chr13	115101537	115101737	-	1	NA	NA	NA	327	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.090000	0.661692	
mm_91786.1	chr10	53337224	53337424	-	1	NA	NA	NA	-362	NM_023129	18821	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0.005000	0.452736	
mm_79018.1	chr9	45852611	45852811	+	1	NA	NA	NA	14166	NM_011792	23821	Mm.24044	NM_011792	ENSMUSG00000032086	Bace1	ASP2|Bace|C76936	beta-site APP cleaving enzyme 1	protein-coding	0.025000	0.562189	
mm_43080.1	chr5	124446932	124447132	+	1	NA	NA	NA	328	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.010000	0.517413	-88(TCCTTTAAGGTC,+,0.00)
mm_66284.1	chr7	37772780	37772980	-	1	NA	NA	NA	-3128	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.065000	0.606965	
mm_58859.1	chr7	16905892	16906092	+	1	NA	NA	NA	-498	NM_008967	19222	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0.000000	0.557214	
mm_146563.1	chr18	6490620	6490820	-	1	NA	NA	NA	-74	NR_035446	100316773		NR_035446	ENSMUSG00000084514	Mir1893	Mirn1893|mmu-mir-1893	microRNA 1893	ncRNA	0.105000	0.701493	
mm_57817.1	chr6	129462583	129462783	-	1	NA	NA	NA	10096	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.000000	0.427861	26(GACTTTAAAAGC,-,0.00),27(ACTTTAAAAGCC,+,0.00)
mm_113999.1	chr13	52583363	52583563	+	1	NA	NA	NA	26	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.145000	0.726368	
mm_95870.1	chr11	58049519	58049719	+	1	NA	NA	NA	40555	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.000000	0.497512	
mm_148120.1	chr18	75297189	75297389	-	1	NA	NA	NA	28	NR_045394	100503117	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.015000	0.601990	
mm_7730.1	chr1	130733752	130733952	-	1	NA	NA	NA	1876	NM_177604	212439	Mm.268547	NM_177604	ENSMUSG00000042510	AA986860	E030025M07|Sarg	expressed sequence AA986860	protein-coding	0.015000	0.552239	
mm_120405.1	chr14	65076367	65076567	+	1	NA	NA	NA	21639	NM_018788	54616	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.050000	0.606965	
mm_57839.1	chr6	129465437	129465637	-	1	NA	NA	NA	7242	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.025000	0.442786	-7(CCGTATTAATGC,-,0.00)
mm_43990.1	chr5	146706567	146706767	+	1	NA	NA	NA	88289	NM_011669	22217	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.035000	0.512438	
mm_69645.1	chr7	138909403	138909603	-	1	NA	NA	NA	3	NM_009760	12176	Mm.378890	NM_009760	ENSMUSG00000078566	Bnip3	Nip3	BCL2/adenovirus E1B interacting protein 3	protein-coding	0.095000	0.741294	
mm_165560.1	chr3	14886359	14886559	+	1	NA	NA	NA	33	NM_009801	12349	Mm.1186	NM_009801	ENSMUSG00000027562	Car2	AI131712|CAII|Ca2|Car-2|Ltw-5|Lvtw-5	carbonic anhydrase 2	protein-coding	0.115000	0.751244	
mm_163955.1	chr14	54686077	54686277	+	1	NA	NA	NA	6	NM_021437	58248	Mm.197509	NM_021437	ENSMUSG00000040822	1700123O20Rik	MNCb-2990	RIKEN cDNA 1700123O20 gene	protein-coding	0.065000	0.606965	-70(CCCCTTAAGGCC,+,0.00)
mm_15350.1	chr2	156179497	156179697	+	1	NA	NA	NA	-17	NM_001291115	170791	Mm.392436	NM_133242	ENSMUSG00000027620	Rbm39	1500012C14Rik|2310040E03Rik|B330012G18Rik|C79248|R75070|Rnpc2|caper	RNA binding motif protein 39	protein-coding	0.100000	0.671642	
mm_171748.1	chr5	100415882	100416082	-	1	NA	NA	NA	252	NM_026969	69162	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	0.115000	0.686567	
mm_122851.1	chr14	54779709	54779909	-	1	NA	NA	NA	2077	NM_016972	50934	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	0.015000	0.368159	
mm_144071.1	chr17	91024576	91024776	-	1	NA	NA	NA	64929	NM_001346957	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.005000	0.378109	42(TTTTTTAAAAGG,-,0.00)
mm_110154.1	chr12	26455115	26455315	-	1	NA	NA	NA	1237	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.010000	0.467662	
mm_136234.1	chr16	90726686	90726886	-	1	NA	NA	NA	585	NM_025642	66578	Mm.180363	NM_025642	ENSMUSG00000022978	Mis18a	2610039C10Rik|2810018N07Rik	MIS18 kinetochore protein A	protein-coding	0.040000	0.527363	
mm_113714.1	chr13	43603765	43603965	+	1	NA	NA	NA	-11932	NM_183204	328234	Mm.40588	NM_183204	ENSMUSG00000044164	Rnf182	C630023L15Rik	ring finger protein 182	protein-coding	0.025000	0.537313	
mm_104507.1	chr11	95982468	95982668	-	1	NA	NA	NA	-19185	NR_037223	100526468		NR_037223	ENSMUSG00000093358	Mir3063	mmu-mir-3063	microRNA 3063	ncRNA	0.005000	0.502488	
mm_139088.1	chr17	46832268	46832468	+	1	NA	NA	NA	-955	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.015000	0.517413	-76(CCATTTCAAGCC,+,0.00)
mm_87945.1	chr10	62946942	62947142	+	1	NA	NA	NA	13	NM_177372	327762	Mm.21492	NM_177372	ENSMUSG00000036875	Dna2	Dna2l|E130315B21Rik	DNA replication helicase/nuclease 2	protein-coding	0.150000	0.741294	
mm_113766.1	chr13	44808530	44808730	+	1	NA	NA	NA	77359	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.005000	0.383085	-33(TTCTATTTAAAG,-,0.00),-31(CTATTTAAAGGG,+,0.00),-31(CTATTTAAAGGG,-,0.00)
mm_2714.1	chr1	128141882	128142082	+	1	NA	NA	NA	38676	NM_181750	226412	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	0.000000	0.437811	
mm_50482.1	chr6	48988201	48988401	+	1	NA	NA	NA	1440	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.005000	0.522388	71(CTTCTTATGGGC,+,0.00)
mm_74188.1	chr8	123653713	123653913	+	1	NA	NA	NA	-116	NM_133955	69581	Mm.168257	NM_133955	ENSMUSG00000039960	Rhou	2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K	ras homolog family member U	protein-coding	0.165000	0.751244	
mm_111617.1	chr12	102404236	102404436	-	1	NA	NA	NA	35477	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.020000	0.487562	
mm_10203.1	chr2	4976039	4976239	+	1	NA	NA	NA	17	NM_026754	68527	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding	0.005000	0.567164	
mm_157497.1	chrX	48454219	48454419	-	1	NA	NA	NA	8813	NM_019680	56501	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|ENSMUSG00000053512|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	0.075000	0.691542	
mm_124510.1	chr14	121915782	121915982	-	1	NA	NA	NA	-108	NM_182806	110168	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	0.025000	0.482587	
mm_69917.1	chr7	141704463	141704663	-	1	NA	NA	NA	14223	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.006757	0.436242	
mm_118970.1	chr14	27876048	27876248	+	1	NA	NA	NA	253741	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	0.040000	0.507463	
mm_87104.1	chr10	33175694	33175894	+	1	NA	NA	NA	80563	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.000000	0.328358	
mm_133644.1	chr16	91740025	91740225	+	1	NA	NA	NA	10754	NM_010587	16443	Mm.40546	NM_010587	ENSMUSG00000022957	Itsn1	AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17	intersectin 1 (SH3 domain protein 1A)	protein-coding	0.025000	0.472637	
mm_108811.1	chr12	95692101	95692301	+	1	NA	NA	NA	-25	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.035000	0.517413	
mm_63544.1	chr7	128062614	128062814	+	1	NA	NA	NA	74	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.010000	0.507463	31(GACTCTTAAAGC,-,0.00)
mm_58373.1	chr6	148946379	148946579	-	1	NA	NA	NA	-47	NM_019643	56306	Mm.18637	NM_019643	ENSMUSG00000039985	Fam60a	Ppcs1|Pptcs1|Tera	family with sequence similarity 60, member A	protein-coding	0.120000	0.626866	-100(CCCTTAAAAGGA,+,0.00),-99(CCTTAAAAGGAC,+,0.00)
mm_52654.1	chr6	117841172	117841372	+	1	NA	NA	NA	-3	NM_001346652	232337	Mm.290847	NM_177684	ENSMUSG00000059689	Zfp637	AI646709|BC021601|Znf32	zinc finger protein 637	protein-coding	0.120000	0.741294	
mm_131869.1	chr16	23175130	23175330	+	1	NA	NA	NA	28694	NM_009605	11450	Mm.3969	NM_009605	ENSMUSG00000022878	Adipoq	30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1	adiponectin, C1Q and collagen domain containing	protein-coding	0.010000	0.427861	
mm_5589.1	chr1	39553246	39553446	-	1	NA	NA	NA	-4506	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.020000	0.388060	
mm_101743.1	chr11	43379168	43379368	-	1	NA	NA	NA	-4807	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.010000	0.393035	
mm_90498.1	chr10	128035272	128035472	+	1	NA	NA	NA	26	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.100000	0.616915	
mm_111002.1	chr12	78861438	78861638	-	1	NA	NA	NA	100	NM_023721	73834	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	0.085000	0.631841	
mm_152708.1	chr19	17356534	17356734	-	1	NA	NA	NA	33	NM_173442	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.085000	0.686567	
mm_2144.1	chr1	88095032	88095232	+	1	NA	NA	NA	131	NM_201642	394432	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	0.005000	0.601990	
mm_109325.1	chr12	109563666	109563866	+	1	NA	NA	NA	74	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.040000	0.597015	
mm_80604.1	chr9	86701351	86701551	+	1	NA	NA	NA	-5537	NM_008615	17436	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding	0.010000	0.522388	
mm_40356.1	chr5	47984233	47984433	+	1	NA	NA	NA	1178	NM_001291228	20563	Mm.289739	NM_178804	ENSMUSG00000031558	Slit2	Drad-1|E030015M03Rik|E130320P19Rik|Slil3|mKIAA4141|slit-2	slit homolog 2 (Drosophila)	protein-coding	0.055000	0.651741	
mm_90010.1	chr10	115251555	115251755	+	1	NA	NA	NA	-162	NM_025706	66687	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0.065000	0.537313	
mm_15176.1	chr2	154162510	154162710	+	1	NA	NA	NA	3	NM_025990	67135	Mm.140317	NM_025990	ENSMUSG00000027484	Bpifa5	2310021H06Rik|2310074B19Rik|Pluncl|Splunc5|Tpl	BPI fold containing family A, member 5	protein-coding	0.025000	0.507463	-34(TTCTATAAAAGA,-,0.00)
mm_79710.1	chr9	61372215	61372415	+	1	NA	NA	NA	-51	NM_001083928	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.085000	0.582090	
mm_29209.1	chr3	106789960	106790160	-	1	NA	NA	NA	89	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.010000	0.427861	
mm_72906.1	chr8	90908481	90908681	+	1	NA	NA	NA	-23668	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.140000	0.810945	
mm_156612.1	chrX	153498084	153498284	+	1	NA	NA	NA	-48	NM_018798	54609	Mm.430772	NM_018798	ENSMUSG00000050148	Ubqln2	Chap1|Dsk2|HRIHFB2157|Plic-2|Plic2	ubiquilin 2	protein-coding	0.155000	0.805970	
mm_8185.1	chr1	138083554	138083754	-	1	NA	NA	NA	91472	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.432836	
mm_65239.1	chr7	19770418	19770618	-	1	NA	NA	NA	14	NM_020486	57278	Mm.29236	NM_020486	ENSMUSG00000002980	Bcam	1200005K12Rik|B-CAM|Gplu|Lu	basal cell adhesion molecule	protein-coding	0.060000	0.716418	
mm_130331.1	chr15	97720346	97720546	-	1	NA	NA	NA	704	NM_008902	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.005000	0.452736	
mm_32471.1	chr4	107706997	107707197	+	1	NA	NA	NA	-22935	NM_019872	56296	Mm.141324	NM_019872	ENSMUSG00000028610	Dmrtb1	Dmrt6|Prp13	DMRT-like family B with proline-rich C-terminal, 1	protein-coding	0.015000	0.497512	
mm_50244.1	chr6	42353378	42353578	+	1	NA	NA	NA	3650	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.025000	0.517413	
mm_40422.1	chr5	53465993	53466193	+	1	NA	NA	NA	-89686	NM_001080928	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.025000	0.537313	
mm_139697.1	chr17	57444988	57445188	+	1	NA	NA	NA	86402	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.020000	0.527363	
mm_15946.1	chr2	165900688	165900888	+	1	NA	NA	NA	-15950	NM_001252587	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.015000	0.557214	
mm_78480.1	chr9	32695711	32695911	+	1	NA	NA	NA	-231	NM_011808	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.095000	0.681592	
mm_23191.1	chr3	40959444	40959644	+	1	NA	NA	NA	8913	NM_001040399	214048	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0.000000	0.388060	
mm_113812.1	chr13	46638128	46638328	+	1	NA	NA	NA	-31294	NM_001033192	97863	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	0.005000	0.298507	
mm_143556.1	chr17	74173791	74173991	-	1	NA	NA	NA	120972	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.000000	0.467662	
mm_111332.1	chr12	86734120	86734320	-	1	NA	NA	NA	-149	NM_001195767	627607	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0.020000	0.527363	
mm_94199.1	chr11	3101393	3101593	+	1	NA	NA	NA	-22528	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.025000	0.368159	
mm_173280.1	chrY	1480566	1480766	+	1	NA	NA	NA	-20884	NM_148943	107868	Mm.347376	NM_148943	ENSMUSG00000069044	Usp9y	Dffry|Fafl2	ubiquitin specific peptidase 9, Y chromosome	protein-coding	0.055000	0.606965	
mm_29000.1	chr3	101582043	101582243	-	1	NA	NA	NA	22564	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.015000	0.522388	
mm_72113.1	chr8	71668307	71668507	+	1	NA	NA	NA	3350	NM_001029873	382018	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.065000	0.582090	-31(CTATTTATAGCG,+,0.00)
mm_53159.1	chr6	125321130	125321330	+	1	NA	NA	NA	-110	NM_011324	20276	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0.035000	0.616915	
mm_118175.1	chr13	106936792	106936992	-	1	NA	NA	NA	23	NM_029665	76582	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.110000	0.616915	
mm_22864.1	chr3	28728993	28729193	+	1	NA	NA	NA	31190	NM_031197	20526	Mm.18443	NM_031197	ENSMUSG00000027690	Slc2a2	AI266973|Glut-2|Glut2	solute carrier family 2 (facilitated glucose transporter), member 2	protein-coding	0.010000	0.437811	
mm_98225.1	chr11	88055763	88055963	+	1	NA	NA	NA	8490	NM_173374	110809	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	0.010000	0.407960	
mm_76416.1	chr8	84966065	84966265	-	1	NA	NA	NA	-154	NM_027187	69724	Mm.182470	NM_027187	ENSMUSG00000052926	Rnaseh2a	2400006P09Rik|RNASEHI|RNHIA|RNHL	ribonuclease H2, large subunit	protein-coding	0.080000	0.606965	
mm_162127.1	chrX	73064552	73064752	+	1	NA	NA	NA	-135	NM_153169	245468	Mm.256249	NM_153169	ENSMUSG00000046287	Pnma3	-	paraneoplastic antigen MA3	protein-coding	0.020000	0.552239	
mm_28244.1	chr3	88498504	88498704	-	1	NA	NA	NA	4748	NM_001111102	16905	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.005000	0.452736	
mm_162276.1	chr1	13062966	13063166	+	1	NA	NA	NA	64097	NM_001081209	383491	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0.005000	0.437811	
mm_38691.1	chr4	145212739	145212939	-	1	NA	NA	NA	-17834	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.000000	0.388060	
mm_109573.1	chr12	112110516	112110716	+	1	NA	NA	NA	-1307	NR_049197	100885836		NR_049197	ENSMUSG00000106228	Mir3073b	mir-3073b|mmu-mir-3073b	microRNA 3073b	ncRNA	0.020000	0.562189	
mm_103109.1	chr11	69980422	69980622	-	1	NA	NA	NA	-192	NM_001253700	54351	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.040000	0.547264	
mm_89956.1	chr10	111294958	111295158	+	1	NA	NA	NA	-3621	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.005000	0.338308	
mm_27156.1	chr3	33082975	33083175	-	1	NA	NA	NA	-15	NM_001289505	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.000000	0.522388	
mm_128514.1	chr15	53345676	53345876	-	1	NA	NA	NA	407	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.070000	0.562189	
mm_7069.1	chr1	87668058	87668258	-	1	NA	NA	NA	47846	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.020000	0.542289	
mm_19436.1	chr2	91963609	91963809	-	1	NA	NA	NA	-146	NM_138306	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.130000	0.761194	
mm_49095.1	chr6	7844555	7844755	+	1	NA	NA	NA	-569	NM_052993	94192	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.105000	0.756219	
mm_75676.1	chr8	67950264	67950464	-	1	NA	NA	NA	24210	NM_177698	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.005000	0.512438	-78(GCTTTTAAACAG,+,0.00)
mm_62224.1	chr7	98491855	98492055	+	1	NA	NA	NA	-2267	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.030000	0.527363	
mm_82188.1	chr9	123938154	123938354	+	1	NA	NA	NA	30438	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.005000	0.383085	-16(GTTTCTTAAAGG,-,0.00)
mm_58917.1	chr7	17713148	17713348	+	1	NA	NA	NA	-4	NM_028480	73250	Mm.244138	NM_028480	ENSMUSG00000008789	Ceacam5	1600029H12Rik|Psg30	carcinoembryonic antigen-related cell adhesion molecule 5	protein-coding	0.000000	0.472637	
mm_78250.1	chr9	21723510	21723710	+	1	NA	NA	NA	34	NM_010700	16835	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.080000	0.616915	
mm_161379.1	chr14	70545489	70545689	+	1	NA	NA	NA	338	NM_180588	72549	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	0.060000	0.651741	
mm_64720.1	chr7	4658480	4658680	-	1	NA	NA	NA	370	NM_172894	243819	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.150000	0.810945	
mm_106850.1	chr12	8008185	8008385	+	1	NA	NA	NA	30608	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.358209	
mm_164627.1	chr17	31681174	31681374	+	1	NA	NA	NA	3343	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.005000	0.582090	
mm_38793.1	chr4	148130592	148130792	-	1	NA	NA	NA	6	NM_027426	70433	Mm.275288	NM_027426	ENSMUSG00000029005	Draxin	2610109H07Rik|neucrin	dorsal inhibitory axon guidance protein	protein-coding	0.110000	0.776119	
mm_167046.1	chr7	81313796	81313996	+	1	NA	NA	NA	31338	NM_009092	20068	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.010000	0.477612	
mm_14847.1	chr2	148395768	148395968	+	1	NA	NA	NA	491	NM_009219	20608	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0.095000	0.666667	
mm_23357.1	chr3	55139941	55140141	+	1	NA	NA	NA	3	NM_177203	320604	Mm.213909	NM_177203	ENSMUSG00000048655	Ccdc169	A730037C10Rik	coiled-coil domain containing 169	protein-coding	0.045000	0.587065	
mm_54805.1	chr6	41704193	41704393	-	1	NA	NA	NA	32	NM_032540	23925	Mm.19958	NM_032540	ENSMUSG00000029866	Kel	CD238|Ece3	Kell blood group	protein-coding	0.000000	0.507463	
mm_43997.1	chr5	146832919	146833119	+	1	NA	NA	NA	129	NM_019647	19933	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	0.095000	0.646766	
mm_49903.1	chr6	38950480	38950680	+	1	NA	NA	NA	31594	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.020000	0.393035	
mm_132250.1	chr16	32751337	32751537	+	1	NA	NA	NA	15551	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.010000	0.442786	
mm_85051.1	chr9	90106934	90107134	-	1	NA	NA	NA	7786	NM_001039147	21761	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.000000	0.358209	82(GTTTATAAACCC,+,0.00)
mm_26655.1	chr3	154597066	154597266	+	1	NA	NA	NA	-68	NM_172474	209584	Mm.347513	NM_172474	ENSMUSG00000047583	Tyw3	5230400J09Rik	tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)	protein-coding	0.065000	0.601990	
mm_95516.1	chr11	52098729	52098929	+	1	NA	NA	NA	5	NM_019411	19052	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.140000	0.761194	
mm_9786.1	chr1	181234339	181234539	-	1	NA	NA	NA	-22461	NM_145514	226757	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.015000	0.577114	
mm_123539.1	chr14	66815389	66815589	-	1	NA	NA	NA	53111	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.030000	0.582090	
mm_162790.1	chr10	75517868	75518068	-	1	NA	NA	NA	4	NM_001347201	68778	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.070000	0.621891	
mm_139360.1	chr17	50528889	50529089	+	1	NA	NA	NA	19442	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.010000	0.452736	
mm_170923.1	chr2	37358519	37358719	-	1	NA	NA	NA	713	NM_026176	67466	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	0.005000	0.532338	
mm_92908.1	chr10	83533997	83534197	-	1	NA	NA	NA	43	NM_153543	216188	Mm.263138	NM_153543	ENSMUSG00000020256	Aldh1l2	D330038I09Rik|mtFDH	aldehyde dehydrogenase 1 family, member L2	protein-coding	0.065000	0.671642	
mm_78350.1	chr9	25307934	25308134	+	1	NA	NA	NA	55595	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.005000	0.323383	64(CTTTTTATAACA,+,0.00)
mm_47416.1	chr5	123139875	123140075	-	1	NA	NA	NA	-2218	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.035000	0.462687	
mm_52311.1	chr6	108828577	108828777	+	1	NA	NA	NA	36	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.135000	0.706468	-42(TTCCTTAAAGGG,-,0.00),-40(CCTTAAAGGGGA,+,0.00)
mm_95608.1	chr11	53433252	53433452	+	1	NA	NA	NA	66	NM_008110	14566	Mm.9714	NM_008110	ENSMUSG00000018238	Gdf9	Gdf-9	growth differentiation factor 9	protein-coding	0.020000	0.497512	
mm_70938.1	chr8	25910117	25910317	+	1	NA	NA	NA	60594	NM_008432	16532	Mm.289679	NM_008432	ENSMUSG00000031576	Kcnu1	Kcnma3|Slo3|mSlo3	potassium channel, subfamily U, member 1	protein-coding	0.040000	0.601990	
mm_119137.1	chr14	31208217	31208417	+	1	NA	NA	NA	5	NM_009393	21924	Mm.439921	NM_009393	ENSMUSG00000091898	Tnnc1	AI874626|TnC|cTnC|cTnI|tncc	troponin C, cardiac/slow skeletal	protein-coding	0.010000	0.577114	-34(GGCTATATAAGC,-,0.00)
mm_169016.1	chr13	109163739	109163939	+	1	NA	NA	NA	-160905	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.010000	0.407960	-85(GCTTTTAAGAGG,+,0.00),-84(CTTTTAAGAGGA,+,0.00)
mm_23529.1	chr3	60626640	60626840	+	1	NA	NA	NA	125561	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.020000	0.313433	
mm_93079.1	chr10	89480914	89481114	-	1	NA	NA	NA	25644	NM_001163700	20186	Mm.3095	NM_009108	ENSMUSG00000047638	Nr1h4	AI957360|Fxr|HRR1|RIP14|Rxrip14	nuclear receptor subfamily 1, group H, member 4	protein-coding	0.010000	0.407960	-33(CCTTTTAAATGC,+,0.00)
mm_102180.1	chr11	54028616	54028816	-	1	NA	NA	NA	-612	NM_001330304	30805	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	0.045000	0.577114	-37(GTCTCTATAAAG,-,0.00),-35(CTCTATAAAGGC,+,0.00),-35(CTCTATAAAGGC,-,0.00)
mm_73669.1	chr8	111337769	111337969	+	1	NA	NA	NA	336	NM_001310613	74568	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0.045000	0.522388	
mm_10442.1	chr2	14261101	14261301	+	1	NA	NA	NA	198	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.005000	0.432836	
mm_148038.1	chr18	70244463	70244663	-	1	NA	NA	NA	21	NM_029346	75577	Mm.58214	NM_029346	ENSMUSG00000024512	Dynap	2310002L13Rik	dynactin associated protein	protein-coding	0.005000	0.373134	-36(TACTTTAAAAGG,-,0.00),-35(ACTTTAAAAGGC,+,0.00)
mm_37321.1	chr4	119383734	119383934	-	1	NA	NA	NA	0	NM_028506	73332	Mm.425204	NM_028506	ENSMUSG00000028637	Ccdc30	1700001O02Rik|1700041C02Rik|1700111D19Rik|4930445I03Rik	coiled-coil domain containing 30	protein-coding	0.015000	0.512438	
mm_52494.1	chr6	114688675	114688875	+	1	NA	NA	NA	45678	NM_001253717	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.010000	0.542289	-81(GAGTTTATAAAC,-,0.00),-79(GTTTATAAACCC,+,0.00)
mm_87646.1	chr10	58394288	58394488	+	1	NA	NA	NA	15	NM_001346676	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.025000	0.557214	
mm_60929.1	chr7	46850108	46850308	+	1	NA	NA	NA	3126	NM_001136069	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.035000	0.497512	
mm_131691.1	chr16	20684141	20684341	+	1	NA	NA	NA	-15	NR_028530	100217430		NR_028530		Snord66	MBII-142|snoRNA142	small nucleolar RNA, C/D box 66	snoRNA	0.035000	0.592040	
mm_145259.1	chr18	52559135	52559335	+	1	NA	NA	NA	-29368	NM_001286182	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.020000	0.452736	
mm_89450.1	chr10	93145248	93145448	+	1	NA	NA	NA	-15528	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.030000	0.522388	
mm_109305.1	chr12	109560596	109560796	+	1	NA	NA	NA	-2996	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.005000	0.437811	
mm_103145.1	chr11	70239727	70239927	-	1	NA	NA	NA	25	NM_173742	52898	Mm.29852	NM_173742	ENSMUSG00000040904	Rnasek	2310033H11Rik|AA571397|D11Bwg0434e	ribonuclease, RNase K	protein-coding	0.075000	0.666667	
mm_55109.1	chr6	50382739	50382939	-	1	NA	NA	NA	-2	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.020000	0.467662	
mm_96465.1	chr11	67613691	67613891	+	1	NA	NA	NA	17236	NM_001277079	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.010000	0.393035	
mm_153633.1	chr19	44028993	44029193	-	1	NA	NA	NA	154	NM_001001446	226143	Mm.329866	NM_001001446	ENSMUSG00000025197	Cyp2c44	AW107714|BC034834|b2b386Clo	cytochrome P450, family 2, subfamily c, polypeptide 44	protein-coding	0.020000	0.552239	
mm_121132.1	chr14	101869325	101869525	+	1	NA	NA	NA	28802	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.015000	0.517413	
mm_67439.1	chr7	80387289	80387489	-	1	NA	NA	NA	557	NM_010194	14159	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.035000	0.557214	
mm_150509.1	chr19	39023863	39024063	+	1	NA	NA	NA	16944	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.010000	0.412935	
mm_169188.1	chr13	66027468	66027668	+	1	NA	NA	NA	-85885	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.025000	0.522388	
mm_13871.1	chr2	119872386	119872586	+	1	NA	NA	NA	-24742	NM_001164274	29808	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	0.075000	0.636816	
mm_37764.1	chr4	129696681	129696881	-	1	NA	NA	NA	57	NM_199305	230770	Mm.257157	NM_199305	ENSMUSG00000053730	Tmem39b	6330509E05Rik|BC037095	transmembrane protein 39b	protein-coding	0.115000	0.706468	
mm_39913.1	chr5	31452381	31452581	+	1	NA	NA	NA	45	NM_172993	269639	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	0.075000	0.616915	
mm_30676.1	chr4	11169704	11169904	+	1	NA	NA	NA	13363	NM_021897	60599	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.020000	0.482587	
mm_159745.1	chr5	72948474	72948674	+	1	NA	NA	NA	34212	NM_153567	75991	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0.000000	0.358209	
mm_138671.1	chr17	35879858	35880058	+	1	NA	NA	NA	180	NM_026987	69192	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	0.155000	0.751244	
mm_152871.1	chr19	24350657	24350857	-	1	NA	NA	NA	-70171	NM_008044	14297	Mm.7319	NM_008044	ENSMUSG00000059363	Fxn	FA|FARR|Frda|X25	frataxin	protein-coding	0.000000	0.482587	
mm_130967.1	chr15	103319509	103319709	-	1	NA	NA	NA	-9171	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.005000	0.432836	
mm_18593.1	chr2	66686085	66686285	-	1	NA	NA	NA	-51223	NM_001290675	20274	Mm.440889	NM_018852	ENSMUSG00000075316	Scn9a	Nav1.7|PN1|mKIAA4197	sodium channel, voltage-gated, type IX, alpha	protein-coding	0.005000	0.432836	
mm_102557.1	chr11	61453435	61453635	-	1	NA	NA	NA	457	NM_009548	22671	Mm.89201	NM_009548	ENSMUSG00000010086	Rnf112	ZNF179|Zfp179|bfp|neurolastin	ring finger protein 112	protein-coding	0.015000	0.616915	
mm_155447.1	chrX	73495022	73495222	+	1	NA	NA	NA	-7964	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.005000	0.497512	
mm_2939.1	chr1	132302796	132302996	+	1	NA	NA	NA	4270	NM_144810	213417	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0.010000	0.457711	
mm_88910.1	chr10	81179564	81179764	+	1	NA	NA	NA	703	NR_028549	100217454		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.035000	0.572139	
mm_52011.1	chr6	93452224	93452424	+	1	NA	NA	NA	460639	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.005000	0.447761	
mm_83800.1	chr9	53157234	53157434	-	1	NA	NA	NA	90778	NM_029936	77591	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	0.000000	0.378109	34(TGCTATAAAAGA,-,0.00)
mm_168845.1	chr12	23800761	23800961	-	1	NA	NA	NA	296408	NM_001256489	66808	Mm.379124	NM_001256489	ENSMUSG00000073158	9030624G23Rik	-	RIKEN cDNA 9030624G23 gene	protein-coding	0.110000	0.736318	
mm_17974.1	chr2	37656428	37656628	-	1	NA	NA	NA	-9243	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding	0.000000	0.363184	
mm_107763.1	chr12	59095502	59095702	+	1	NA	NA	NA	-198	NM_001329047	338320	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.030000	0.462687	
mm_46118.1	chr5	92434989	92435189	-	1	NA	NA	NA	110	NM_183392	269113	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.105000	0.676617	
mm_149727.1	chr19	21792729	21792929	+	1	NA	NA	NA	14489	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.080000	0.601990	
mm_58982.1	chr7	19076158	19076358	+	1	NA	NA	NA	58	NM_010058	13401	Mm.2852	NM_010058	ENSMUSG00000030410	Dmwd	DMR-N9|Dm9	dystrophia myotonica-containing WD repeat motif	protein-coding	0.145000	0.766169	
mm_115112.1	chr13	103919539	103919739	+	1	NA	NA	NA	947	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.045000	0.442786	
mm_143020.1	chr17	56512357	56512557	-	1	NA	NA	NA	26	NM_011483	20834	Mm.76862	NM_011483	ENSMUSG00000044526	Znrf4	1700094M01Rik|Ssrzf1|spzn	zinc and ring finger 4	protein-coding	0.085000	0.636816	
mm_23782.1	chr3	79336534	79336734	+	1	NA	NA	NA	-8742	NM_001142953	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.015000	0.517413	
mm_119412.1	chr14	45038078	45038278	+	1	NA	NA	NA	50067	NM_008964	19217	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.020000	0.393035	
mm_116197.1	chr13	31681369	31681569	-	1	NA	NA	NA	55653	NM_010225	14238	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	0.010000	0.467662	
mm_79921.1	chr9	65587104	65587304	+	1	NA	NA	NA	-1	NM_172453	208084	Mm.211032	NM_172453	ENSMUSG00000041064	Pif1	4631410M14|AI449441	PIF1 5'-to-3' DNA helicase	protein-coding	0.040000	0.462687	
mm_18400.1	chr2	60275502	60275702	-	1	NA	NA	NA	8882	NM_025422	66205	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.055000	0.492537	
mm_102395.1	chr11	59002088	59002288	-	1	NA	NA	NA	24095	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.030000	0.552239	
mm_151214.1	chr19	53633896	53634096	+	1	NA	NA	NA	33600	NM_007790	13006	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.025000	0.452736	
mm_124588.1	chr15	3273076	3273276	+	1	NA	NA	NA	2199	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.010000	0.462687	34(GCATTAAAAGCA,+,0.00)
mm_60505.1	chr7	44479404	44479604	+	1	NA	NA	NA	-5013	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.437811	
mm_64323.1	chr7	141949787	141949987	+	1	NA	NA	NA	136	NM_001009929	75770	Mm.274868	NM_029426	ENSMUSG00000053046	Brsk2	4833424K13Rik|SAD-A|SADA	BR serine/threonine kinase 2	protein-coding	0.175000	0.855721	
mm_115636.1	chr13	12243999	12244199	-	1	NA	NA	NA	14014	NM_001081128	238505	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.000000	0.398010	
mm_12469.1	chr2	71421572	71421772	+	1	NA	NA	NA	7196	NR_039557	100628577		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.005000	0.318408	
mm_152185.1	chr19	7430928	7431128	-	1	NA	NA	NA	8455	NR_105957	102466781		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	0.015000	0.402985	
mm_34291.1	chr4	141573177	141573377	+	1	NA	NA	NA	26647	NM_001163256	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.010000	0.527363	
mm_162963.1	chr11	7199724	7199924	+	1	NA	NA	NA	2037	NM_008341	16006	Mm.21300	NM_008341	ENSMUSG00000020429	Igfbp1	-	insulin-like growth factor binding protein 1	protein-coding	0.045000	0.592040	
mm_93005.1	chr10	87007923	87008123	-	1	NA	NA	NA	-81	NM_138673	192188	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.000000	0.502488	
mm_24943.1	chr3	96596520	96596720	+	1	NA	NA	NA	-16	NM_001024851	545554	Mm.267664	NM_001024851	ENSMUSG00000049097	Ankrd34a	AW060394|Ankrd34	ankyrin repeat domain 34A	protein-coding	0.070000	0.681592	-53(GGCTATAAATAG,-,0.00)
mm_156353.1	chrX	139334058	139334258	+	1	NA	NA	NA	475	NM_011635	22037	Mm.1297	NM_011635	ENSMUSG00000051257	Trap1a	Tra-P1A	tumor rejection antigen P1A	protein-coding	0.055000	0.517413	-99(CCTTATCTAGGG,+,0.00),-29(CCCTTTATGAGG,+,0.00),-29(CCCTTTATGAGG,-,0.00)
mm_74063.1	chr8	122376815	122377015	+	1	NA	NA	NA	299	NM_001029993	76014	Mm.241489	NM_001029993	ENSMUSG00000017478	Zc3h18	1190001B23Rik|5830416A07Rik|Nhn1	zinc finger CCCH-type containing 18	protein-coding	0.190000	0.850746	
mm_104399.1	chr11	94507241	94507441	-	1	NA	NA	NA	-7367	NM_027984	71889	Mm.248620	NM_027984	ENSMUSG00000010080	Epn3	2310022G12Rik	epsin 3	protein-coding	0.010000	0.517413	
mm_64780.1	chr7	5038320	5038520	-	1	NA	NA	NA	26	NM_001039532	654801	Mm.333548	NM_001039532	ENSMUSG00000043290	Zfp784	C730049F21Rik|Znf784	zinc finger protein 784	protein-coding	0.145000	0.731343	
mm_161548.1	chr16	9992386	9992586	-	1	NA	NA	NA	47	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.080000	0.646766	
mm_18489.1	chr2	62602804	62603004	-	1	NA	NA	NA	-28883	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.005000	0.437811	
mm_31693.1	chr4	62388509	62388709	+	1	NA	NA	NA	20014	NM_139291	66440	Mm.109930	NM_139291	ENSMUSG00000066149	Cdc26	2010012C09Rik	cell division cycle 26	protein-coding	0.005000	0.547264	
mm_58784.1	chr7	16116630	16116830	+	1	NA	NA	NA	-3146	NM_133727	70394	Mm.41101	NM_133727	ENSMUSG00000006021	Kptn	2310042D10Rik|2E4|C030013F01Rik	kaptin	protein-coding	0.020000	0.582090	
mm_166089.1	chr4	139460170	139460370	+	1	NA	NA	NA	-70278	NM_183148	212632	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	0.050000	0.597015	
mm_116903.1	chr13	55426705	55426905	-	1	NA	NA	NA	-1	NM_021489	58992	Mm.42224	NM_021489	ENSMUSG00000021492	F12	FXII|HAF	coagulation factor XII (Hageman factor)	protein-coding	0.030000	0.572139	
mm_156530.1	chrX	151046861	151047061	+	1	NA	NA	NA	-209	NM_008001	14163	Mm.8142	NM_008001	ENSMUSG00000025265	Fgd1	ZFYVE3	FYVE, RhoGEF and PH domain containing 1	protein-coding	0.110000	0.716418	
mm_63185.1	chr7	125552183	125552383	+	1	NA	NA	NA	1	NM_001008700	16190	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0.100000	0.676617	
mm_159925.1	chr6	56924011	56924211	+	1	NA	NA	NA	-179	NM_026004	107569	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0.035000	0.487562	
mm_127615.1	chr15	102460311	102460511	+	1	NA	NA	NA	1241	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.030000	0.542289	
mm_24174.1	chr3	88575703	88575903	+	1	NA	NA	NA	-3868	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.005000	0.467662	
mm_39576.1	chr5	23434353	23434553	+	1	NA	NA	NA	24	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.155000	0.781095	
mm_134317.1	chr16	15895701	15895901	-	1	NA	NA	NA	8515	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.005000	0.472637	
mm_43055.1	chr5	124185408	124185608	+	1	NA	NA	NA	1674	NM_001289472	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.030000	0.512438	
mm_101771.1	chr11	44260415	44260615	-	1	NA	NA	NA	-139548	NM_001303244	16160	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.015000	0.512438	
mm_76751.1	chr8	95434671	95434871	-	1	NA	NA	NA	98	NM_008187	14894	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.140000	0.736318	
mm_161581.1	chr16	31663314	31663514	+	1	NA	NA	NA	-29	NM_001252435	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.045000	0.557214	
mm_89933.1	chr10	111247741	111247941	+	1	NA	NA	NA	-50838	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.020000	0.422886	
mm_140947.1	chr17	24527757	24527957	-	1	NA	NA	NA	81	NM_153792	224619	Mm.275150	NM_153792	ENSMUSG00000052752	Traf7	RFWD1	TNF receptor-associated factor 7	protein-coding	0.085000	0.616915	
mm_153167.1	chr19	34493316	34493516	-	1	NA	NA	NA	-18281	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.015000	0.512438	80(GCTTTTATATTC,+,0.00)
mm_64697.1	chr7	4528055	4528255	-	1	NA	NA	NA	4287	NM_001033548	436022	Mm.425359	NM_001033548	ENSMUSG00000055809	Dnaaf3	6030429G01Rik|b2b1739Clo	dynein, axonemal assembly factor 3	protein-coding	0.025000	0.542289	
mm_25773.1	chr3	126596262	126596462	+	1	NA	NA	NA	-589	NM_001293663	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.030000	0.527363	
mm_115616.1	chr13	12053884	12054084	-	1	NA	NA	NA	52961	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.005000	0.432836	
mm_99066.1	chr11	99168042	99168242	+	1	NA	NA	NA	-13065	NM_007719	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.040000	0.457711	
mm_26410.1	chr3	142608149	142608349	+	1	NA	NA	NA	-12414	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.000000	0.442786	
mm_157317.1	chrX	21178933	21179133	-	1	NA	NA	NA	42632	NM_001252013	100503481	Mm.272069	NM_001252013		4930453H23Rik	-	RIKEN cDNA 4930453H23 gene	protein-coding	0.000000	0.427861	
mm_163560.1	chr13	24613989	24614189	-	1	NA	NA	NA	-517	NM_001286101	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.010000	0.393035	
mm_105595.1	chr11	106750094	106750294	-	1	NA	NA	NA	-1032	NM_001271375	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.015000	0.517413	
mm_136603.1	chr17	5189808	5190008	+	1	NA	NA	NA	194834	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.090000	0.721393	
mm_128986.1	chr15	74834521	74834721	-	1	NA	NA	NA	7022	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.000000	0.417910	
mm_150565.1	chr19	39567955	39568155	+	1	NA	NA	NA	57233	NM_010003	13098	Mm.42101	NM_010003	ENSMUSG00000025003	Cyp2c39	CYPIIC39	cytochrome P450, family 2, subfamily c, polypeptide 39	protein-coding	0.010000	0.402985	
mm_169805.1	chr16	18533141	18533341	-	1	NA	NA	NA	34370	NR_104347	13972	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|OTTMUSG00000033458|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	0.030000	0.412935	
mm_87501.1	chr10	52022427	52022627	+	1	NA	NA	NA	25	NM_153786	215031	Mm.87237	NM_153786	ENSMUSG00000049641	Vgll2	C130057C21Rik|VITO-1|Vito1|vgl-2	vestigial like family member 2	protein-coding	0.105000	0.686567	-31(GGGTTTAAATGC,-,0.00)
mm_1859.1	chr1	84869055	84869255	+	1	NA	NA	NA	29314	NM_025386	66153	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.005000	0.492537	-38(GTGTATATAGGC,-,0.00),-5(TTCCTTATAGGG,-,0.00),-3(CCTTATAGGGAA,+,0.00)
mm_52488.1	chr6	114644731	114644931	+	1	NA	NA	NA	1734	NM_001253717	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.000000	0.383085	
mm_81745.1	chr9	113930876	113931076	+	1	NA	NA	NA	42	NM_013699	22221	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0.120000	0.696517	
mm_5236.1	chr1	14931149	14931349	-	1	NA	NA	NA	-12387	NM_177781	277328	Mm.186329	NM_177781	ENSMUSG00000032769	Trpa1	Anktm1|TRPA1b	transient receptor potential cation channel, subfamily A, member 1	protein-coding	0.015000	0.437811	-33(GACTATAAAAGT,-,0.00)
mm_94486.1	chr11	6636613	6636813	+	1	NA	NA	NA	1936	NM_011709	22373	Mm.268094	NM_011709	ENSMUSG00000000381	Wap	-	whey acidic protein	protein-coding	0.025000	0.537313	
mm_30631.1	chr4	8800125	8800325	+	1	NA	NA	NA	109819	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.020000	0.437811	
mm_97143.1	chr11	75348427	75348627	+	1	NA	NA	NA	94	NM_001102611	319822	Mm.340377	NM_177009	ENSMUSG00000018809	Smyd4	G430029E23Rik	SET and MYND domain containing 4	protein-coding	0.100000	0.671642	
mm_114468.1	chr13	67779691	67779891	+	1	NA	NA	NA	98	NM_028402	72958	Mm.53849	NM_028402	ENSMUSG00000090659	Zfp493	2900054J07Rik|Rslcan12	zinc finger protein 493	protein-coding	0.055000	0.542289	
mm_40631.1	chr5	64822897	64823097	+	1	NA	NA	NA	19474	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.010000	0.447761	-11(CCTTTAATGAAC,+,0.00)
mm_151147.1	chr19	53140388	53140588	+	1	NA	NA	NA	45	NM_001164101	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.020000	0.517413	-2(CCTTTAAGAGAG,+,0.00)
mm_152516.1	chr19	11279594	11279794	-	1	NA	NA	NA	4119	NM_183190	269063	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	0.015000	0.452736	
mm_1420.1	chr1	67168215	67168415	+	1	NA	NA	NA	45288	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.010000	0.452736	
mm_48101.1	chr5	137066920	137067120	-	1	NA	NA	NA	5252	NM_008871	18787	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.030000	0.552239	
mm_12880.1	chr2	84678376	84678576	+	1	NA	NA	NA	74	NM_025885	381379	Mm.219643	NM_025885	ENSMUSG00000027080	Med19	2410018M14Rik|3110040A13Rik|LCMR1	mediator complex subunit 19	protein-coding	0.055000	0.626866	
mm_1582.1	chr1	74284956	74285156	+	1	NA	NA	NA	22	NM_001039509	56695	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0.090000	0.646766	
mm_49720.1	chr6	34598459	34598659	+	1	NA	NA	NA	55	NM_001347100	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.005000	0.532338	
mm_79627.1	chr9	59291523	59291723	+	1	NA	NA	NA	51	NM_028121	72141	Mm.22456	NM_028121	ENSMUSG00000025236	Adpgk	2610017G09Rik|Adp-gk|C77577	ADP-dependent glucokinase	protein-coding	0.135000	0.716418	
mm_138673.1	chr17	35888032	35888232	+	1	NA	NA	NA	8354	NM_026987	69192	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	0.030000	0.587065	
mm_26738.1	chr3	6169704	6169904	-	1	NA	NA	NA	450639	NM_027048	69347	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	0.005000	0.393035	
mm_84958.1	chr9	83447866	83448066	-	1	NA	NA	NA	-6839	NM_029434	75782	Mm.199698	NM_027448	ENSMUSG00000032258	Lca5	4930431B11Rik|5730406O13Rik|AV274874|ORF64	Leber congenital amaurosis 5 (human)	protein-coding	0.050000	0.597015	
mm_123450.1	chr14	65194884	65195084	-	1	NA	NA	NA	67479	NM_021458	14365	Mm.214687	NM_021458	ENSMUSG00000007989	Fzd3	AU020229|D930050A07Rik|Fz3	frizzled class receptor 3	protein-coding	0.010000	0.447761	-81(CTTTTTATAGTG,+,0.00)
mm_146392.1	chr18	82855796	82855996	+	1	NA	NA	NA	-1	NR_125720	73985	Mm.399211	NR_125720	ENSMUSG00000097738	4930445N18Rik	3010027C24Rik	RIKEN cDNA 4930445N18 gene	ncRNA	0.030000	0.507463	-1(AAGTCTAAAAGC,-,0.00)
mm_12043.1	chr2	58790083	58790283	+	1	NA	NA	NA	34999	NM_029692	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.020000	0.462687	
mm_148304.1	chr18	83107763	83107963	-	1	NA	NA	NA	-187303	NR_033307	75853	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.010000	0.507463	
mm_145115.1	chr18	44315613	44315813	+	1	NA	NA	NA	-18361	NM_001033621	58916	Mm.143804	NM_001033621	ENSMUSG00000024471	Myot	5530402I04Rik|Ttid	myotilin	protein-coding	0.005000	0.497512	
mm_67353.1	chr7	79836227	79836427	-	1	NA	NA	NA	6025	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.045000	0.537313	
mm_163358.1	chr12	29345840	29346040	-	1	NA	NA	NA	-182444	NM_001093775	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.010000	0.427861	
mm_20713.1	chr2	134643931	134644131	-	1	NA	NA	NA	90	NM_029148	52837	Mm.264096	NM_029148	ENSMUSG00000034723	Tmx4	2810417D04Rik|4930500L08Rik|AI843224|AW046784|D2Bwg1356e|Txndc13|mKIAA1162	thioredoxin-related transmembrane protein 4	protein-coding	0.080000	0.691542	
mm_158686.1	chrX	160735707	160735907	-	1	NA	NA	NA	-15835	NM_011147	237178	Mm.296779	NM_011147	ENSMUSG00000062168	Ppef1	PPEF-1	protein phosphatase with EF hand calcium-binding domain 1	protein-coding	0.025000	0.492537	
mm_163526.1	chr12	117843357	117843557	+	1	NA	NA	NA	-404	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.065000	0.592040	
mm_171164.1	chr3	25731124	25731324	+	1	NA	NA	NA	422083	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.055000	0.527363	-60(CCATTTAAACCA,+,0.00)
mm_127873.1	chr15	8444378	8444578	-	1	NA	NA	NA	-15	NM_201232	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.080000	0.681592	
mm_67152.1	chr7	73532174	73532374	-	1	NA	NA	NA	9472	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.005000	0.452736	
mm_87536.1	chr10	53525878	53526078	+	1	NA	NA	NA	-6989	NR_037973	100502868	Mm.297722	NR_037973		Gm20597	B230314j19	predicted gene, 20597	ncRNA	0.005000	0.477612	-32(GCGTATAAATAG,-,0.00)
mm_20512.1	chr2	130638271	130638471	-	1	NA	NA	NA	4473	NM_197945	241638	Mm.440130	NM_197945	ENSMUSG00000037703	Lzts3	Prosapip1	leucine zipper, putative tumor suppressor family member 3	protein-coding	0.020000	0.616915	
mm_23795.1	chr3	79629026	79629226	+	1	NA	NA	NA	47	NM_029482	75939	Mm.221520	NM_029482	ENSMUSG00000027811	4930579G24Rik	-	RIKEN cDNA 4930579G24 gene	protein-coding	0.080000	0.646766	
mm_419.1	chr1	34307836	34308036	+	1	NA	NA	NA	125263	NR_039562	100628580		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0.010000	0.373134	13(CCTTTTATGGAG,+,0.00)
mm_133294.1	chr16	77499921	77500121	+	1	NA	NA	NA	-98915	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.035000	0.497512	
mm_108847.1	chr12	98270045	98270245	+	1	NA	NA	NA	1510	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.000000	0.457711	-64(ACCTTTATAGCC,+,0.00),89(AACCTTTAAAGG,-,0.00)
mm_148575.1	chr19	4870984	4871184	+	1	NA	NA	NA	6825	NM_013456	11474	Mm.5316	NM_013456	ENSMUSG00000006457	Actn3	-	actinin alpha 3	protein-coding	0.025000	0.567164	
mm_46548.1	chr5	106574589	106574789	-	1	NA	NA	NA	-116523	NM_001005477	104382	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH-like 2 (Drosophila)	protein-coding	0.140000	0.781095	
mm_172853.1	chr9	37453618	37453818	+	1	NA	NA	NA	-20543	NM_001164767	19649	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0.015000	0.487562	
mm_76174.1	chr8	82392440	82392640	-	1	NA	NA	NA	10046	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.010000	0.487562	
mm_138418.1	chr17	35069340	35069540	+	1	NA	NA	NA	2115	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.040000	0.582090	
mm_64470.1	chr7	143005627	143005827	+	1	NA	NA	NA	68	NM_001128081	27027	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.000000	0.552239	
mm_156289.1	chrX	136837365	136837565	+	1	NA	NA	NA	14719	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.000000	0.313433	
mm_173014.1	chrM	573	773	+	1	NA	NA	NA	NA	NA									0.025000	0.393035	2(GCCTATATACCG,+,0.00)
mm_70766.1	chr8	21935215	21935415	+	1	NA	NA	NA	-2605	NM_139222	246082	Mm.390015	NM_139222	ENSMUSG00000048500	Defb15	BD-15	defensin beta 15	protein-coding	0.005000	0.402985	
mm_58103.1	chr6	137570920	137571120	-	1	NA	NA	NA	-11	NM_001271587	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.015000	0.502488	
mm_171017.1	chr2	83966419	83966619	+	1	NA	NA	NA	-25293	NM_027964	71861	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.050000	0.442786	
mm_132332.1	chr16	33819403	33819603	+	1	NA	NA	NA	-10162	NM_010580	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.015000	0.542289	
mm_172299.1	chr7	101302136	101302336	-	1	NA	NA	NA	-148	NM_001111111	73683	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.050000	0.611940	
mm_10890.1	chr2	25263220	25263420	+	1	NA	NA	NA	722	NM_175286	97031	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0.110000	0.711443	
mm_10137.1	chr2	4131562	4131762	+	1	NA	NA	NA	9479	NR_040500	73489	Mm.488103	NR_040500	ENSMUSG00000084859	1700080N15Rik	4933408D14Rik	RIKEN cDNA 1700080N15 gene	ncRNA	0.010000	0.328358	
mm_27643.1	chr3	63865279	63865479	-	1	NA	NA	NA	-14388	NM_001177732	269437	Mm.316391	NM_183191	ENSMUSG00000036834	Plch1	BC042549|PLC-eta-1|PLCeta1|Plcl3	phospholipase C, eta 1	protein-coding	0.005000	0.338308	-80(GTCTATAAAAAA,-,0.00)
mm_107512.1	chr12	40222155	40222355	+	1	NA	NA	NA	556	NR_035459	100316693		NR_035459	ENSMUSG00000089371	Mir1938	mir-1938|mmu-mir-1938	microRNA 1938	ncRNA	0.060000	0.616915	
mm_153248.1	chr19	36264095	36264295	-	1	NA	NA	NA	-114872	NM_029508	76073	Mm.259180	NM_029508	ENSMUSG00000024805	Pcgf5	0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127	polycomb group ring finger 5	protein-coding	0.005000	0.467662	
mm_31510.1	chr4	53712572	53712772	+	1	NA	NA	NA	-1510	NM_139309	246179	Mm.247210	NM_139309	ENSMUSG00000028414	Fktn	D830030O17Rik|Fcmd	fukutin	protein-coding	0.020000	0.492537	
mm_11276.1	chr2	30061930	30062130	+	1	NA	NA	NA	34	NM_023871	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.065000	0.611940	
mm_66317.1	chr7	40898512	40898712	-	1	NA	NA	NA	-288	NR_040329	320210	Mm.126237	NR_040329	ENSMUSG00000100600	A230077H06Rik	-	RIKEN cDNA A230077H06 gene	ncRNA	0.080000	0.691542	
mm_150002.1	chr19	29286235	29286435	+	1	NA	NA	NA	34532	NM_008413	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.010000	0.417910	
mm_5701.1	chr1	43198239	43198439	-	1	NA	NA	NA	-1578	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.000000	0.452736	
mm_106519.1	chr11	120551053	120551253	-	1	NA	NA	NA	-21	NM_026814	68701	Mm.46477	NM_026814	ENSMUSG00000025129	Ppp1r27	1110033I14Rik|Dysfip1|toonin	protein phosphatase 1, regulatory subunit 27	protein-coding	0.040000	0.542289	-34(GGCTTTATATAG,-,0.00),-32(CTTTATATAGCC,+,0.00),-13(CCCTTTATAAGC,+,0.00),-13(CCCTTTATAAGC,-,0.00)
mm_25480.1	chr3	109025889	109026089	+	1	NA	NA	NA	1618	NM_001163567	329739	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.065000	0.432836	
mm_90616.1	chr10	128391165	128391365	+	1	NA	NA	NA	2433	NR_105880	102465979		NR_105880	ENSMUSG00000106600	Mir6915	mmu-mir-6915	microRNA 6915	ncRNA	0.010000	0.552239	
mm_13662.1	chr2	114056206	114056406	+	1	NA	NA	NA	1910	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.015000	0.427861	-77(CCCTTAATGGCT,+,0.00)
mm_132221.1	chr16	32631542	32631742	+	1	NA	NA	NA	-13001	NM_001110147	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.020000	0.373134	
mm_26957.1	chr3	21935940	21936140	-	1	NA	NA	NA	-140612	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.045000	0.542289	
mm_60343.1	chr7	44356246	44356446	+	1	NA	NA	NA	18684	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.015000	0.482587	
mm_66743.1	chr7	46711941	46712141	-	1	NA	NA	NA	-1390	NM_030233	78935	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.010000	0.452736	
mm_134848.1	chr16	27348355	27348555	-	1	NA	NA	NA	21784	NM_198166	224065	Mm.326918	NM_198166	ENSMUSG00000056423	Uts2b	Gm538|U2B|Urp|Uts2d	urotensin 2B	protein-coding	0.000000	0.373134	-43(CTTTTTATAGCT,+,0.00)
mm_69226.1	chr7	127615148	127615348	-	1	NA	NA	NA	-815	NM_177226	320683	Mm.156718	NM_177226	ENSMUSG00000045639	Zfp629	9330199A09Rik|Znf629	zinc finger protein 629	protein-coding	0.030000	0.611940	
mm_112586.1	chr13	13769269	13769469	+	1	NA	NA	NA	-14690	NM_001302997	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0.005000	0.422886	
mm_153211.1	chr19	34747008	34747208	-	1	NA	NA	NA	3	NM_172838	240638	Mm.74636	NM_172838	ENSMUSG00000009378	Slc16a12	3230401A21|AW210596	solute carrier family 16 (monocarboxylic acid transporters), member 12	protein-coding	0.125000	0.761194	
mm_126706.1	chr15	85228766	85228966	+	1	NA	NA	NA	22858	NM_010180	14114	Mm.297992	NM_010180	ENSMUSG00000006369	Fbln1	-	fibulin 1	protein-coding	0.000000	0.542289	
mm_168891.1	chr12	4720061	4720261	+	1	NA	NA	NA	18222	NM_029107	74855	Mm.269534	NM_029107	ENSMUSG00000079177	Fam228a	4930417G10Rik	family with sequence similarity 228, member A	protein-coding	0.020000	0.507463	
mm_8589.1	chr1	156005700	156005900	-	1	NA	NA	NA	29017	NM_001160019	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.000000	0.343284	
mm_73304.1	chr8	105131797	105131997	+	1	NA	NA	NA	97	NM_146213	234677	Mm.120297	NM_146213	ENSMUSG00000060560	Ces4a	Ces8	carboxylesterase 4A	protein-coding	0.015000	0.557214	
mm_145465.1	chr18	60247231	60247431	+	1	NA	NA	NA	25936	NM_001034859	225594	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	0.005000	0.398010	
mm_152024.1	chr19	6047317	6047517	-	1	NA	NA	NA	272	NM_001164709	74126	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0.090000	0.686567	
mm_30265.1	chr3	146770352	146770552	-	1	NA	NA	NA	-214	NM_001164198	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.025000	0.442786	-43(GCATTTAAAGAT,+,0.00)
mm_2857.1	chr1	131688602	131688802	+	1	NA	NA	NA	7	NM_001311096	226421	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0.025000	0.547264	
mm_95026.1	chr11	32024686	32024886	+	1	NA	NA	NA	23509	NM_001290681	18197	Mm.3304	NM_008741	ENSMUSG00000020297	Nsg2	-	neuron specific gene family member 2	protein-coding	0.010000	0.383085	-98(TGGTAGAAAAGG,-,0.00),-77(GTGTTTAAAGGC,-,0.00)
mm_121810.1	chr14	20388767	20388967	-	1	NA	NA	NA	43	NM_134081	108671	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	0.100000	0.701493	
mm_110829.1	chr12	72628834	72629034	-	1	NA	NA	NA	35894	NM_025522	66375	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.015000	0.547264	
mm_144413.1	chr18	20961516	20961716	+	1	NA	NA	NA	16991	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.100000	0.726368	
mm_139164.1	chr17	47557605	47557805	+	1	NA	NA	NA	-35762	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.497512	
mm_83980.1	chr9	57265713	57265913	-	1	NA	NA	NA	-3214	NM_028820	74211	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.000000	0.492537	
mm_145198.1	chr18	49945122	49945322	+	1	NA	NA	NA	-34205	NM_001177760	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.010000	0.527363	
mm_36578.1	chr4	88032642	88032842	-	1	NA	NA	NA	665	NM_027326	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.125000	0.681592	
mm_118468.1	chr14	11553483	11553683	+	1	NA	NA	NA	30	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.075000	0.631841	
mm_171189.1	chr3	43306186	43306386	-	1	NA	NA	NA	1563668	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.050000	0.616915	
mm_71641.1	chr8	57512444	57512644	+	1	NA	NA	NA	701	NM_008252	97165	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.100000	0.716418	
mm_163083.1	chr11	69091363	69091563	+	1	NA	NA	NA	2935	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.010000	0.532338	
mm_156356.1	chrX	139335750	139335950	+	1	NA	NA	NA	2167	NM_011635	22037	Mm.1297	NM_011635	ENSMUSG00000051257	Trap1a	Tra-P1A	tumor rejection antigen P1A	protein-coding	0.005000	0.557214	
mm_103069.1	chr11	69877944	69878144	-	1	NA	NA	NA	-26	NM_001195710	100503361	Mm.340490	NM_001195710	ENSMUSG00000094845	Tmem95	432576	transmembrane protein 95	protein-coding	0.015000	0.532338	
mm_42474.1	chr5	115465001	115465201	+	1	NA	NA	NA	-1165	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.015000	0.472637	
mm_143632.1	chr17	78936953	78937153	-	1	NA	NA	NA	17	NM_001024806	12607	Mm.24169	NM_009882	ENSMUSG00000024081	Cebpz	AI848081|CBF2|Cbf|Cebpa-rs1	CCAAT/enhancer binding protein zeta	protein-coding	0.090000	0.621891	
mm_123085.1	chr14	55745591	55745791	-	1	NA	NA	NA	-2	NM_026403	67842	Mm.180338	NM_026403	ENSMUSG00000019297	Nop9	2610027L16Rik	NOP9 nucleolar protein	protein-coding	0.105000	0.696517	
mm_115131.1	chr13	104287847	104288047	+	1	NA	NA	NA	112	NM_001081020	108154	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.045000	0.407960	5(TCTTTTAAACTC,+,0.00)
mm_66297.1	chr7	38023420	38023620	-	1	NA	NA	NA	-3968	NM_011274	19777	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	0.020000	0.467662	
mm_75124.1	chr8	34869666	34869866	-	1	NA	NA	NA	62156	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.010000	0.358209	
mm_22844.1	chr3	27984181	27984381	+	1	NA	NA	NA	110	NM_008875	18805	Mm.212039	NM_008875	ENSMUSG00000027695	Pld1	AA536939|C85393|Pld1a|Pld1b|mPLD1	phospholipase D1	protein-coding	0.020000	0.467662	
mm_77420.1	chr8	121070212	121070412	-	1	NA	NA	NA	12798	NR_045471	68790	Mm.246916	NR_045471	ENSMUSG00000097336	Fendrr	1110050K14Rik|LL66|linc-Foxf1a|lincFoxf1	Foxf1 adjacent non-coding developmental regulatory RNA	ncRNA	0.005000	0.626866	
mm_37801.1	chr4	130548286	130548486	-	1	NA	NA	NA	25650	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.020000	0.472637	
mm_119797.1	chr14	54207004	54207204	+	1	NA	NA	NA	46825	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.452736	
mm_164564.1	chr17	17871069	17871269	+	1	NA	NA	NA	12770	NM_013521	14293	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0.005000	0.417910	
mm_63183.1	chr7	125548285	125548485	+	1	NA	NA	NA	-3897	NM_001008700	16190	Mm.233802	NM_010557	ENSMUSG00000030748	Il4ra	CD124|Il4r	interleukin 4 receptor, alpha	protein-coding	0.000000	0.432836	
mm_94051.1	chr10	128180112	128180312	-	1	NA	NA	NA	85	NM_001039080	56516	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.030000	0.482587	
mm_139713.1	chr17	57462669	57462869	+	1	NA	NA	NA	82545	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.000000	0.557214	
mm_48483.1	chr5	141380838	141381038	-	1	NA	NA	NA	139404	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	0.010000	0.482587	
mm_83014.1	chr9	36782704	36782904	-	1	NA	NA	NA	14264	NM_007915	13663	Mm.4337	NM_007915	ENSMUSG00000062762	Ei24	AA536736|AI115355|PIG8	etoposide induced 2.4 mRNA	protein-coding	0.025000	0.427861	
mm_70481.1	chr8	12395748	12395948	+	1	NA	NA	NA	329	NM_009233	20664	Mm.39088	NM_009233	ENSMUSG00000096014	Sox1	BB176347|Sox-1	SRY (sex determining region Y)-box 1	protein-coding	0.080000	0.696517	
mm_87400.1	chr10	45577763	45577963	+	1	NA	NA	NA	34	NM_172473	209462	Mm.458633	NM_172473	ENSMUSG00000038822	Hace1	1700042J16Rik|A730034A22Rik|BC025474	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	protein-coding	0.120000	0.711443	
mm_135365.1	chr16	44027854	44028054	-	1	NA	NA	NA	-9	NM_001172107	207798	Mm.19316	NM_153528	ENSMUSG00000036292	Gramd1c	4921521N14Rik	GRAM domain containing 1C	protein-coding	0.050000	0.572139	
mm_61169.1	chr7	59248630	59248830	+	1	NA	NA	NA	19978	NM_011668	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|mKIAA4216	ubiquitin protein ligase E3A	protein-coding	0.000000	0.298507	
mm_133213.1	chr16	75659272	75659472	+	1	NA	NA	NA	66481	NM_198302	224344	Mm.273214	NM_198302	ENSMUSG00000032940	Rbm11	A330018F01	RNA binding motif protein 11	protein-coding	0.010000	0.393035	
mm_65842.1	chr7	29247636	29247836	-	1	NA	NA	NA	731	NM_028179	72275	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0.035000	0.577114	
mm_32189.1	chr4	101187530	101187730	+	1	NA	NA	NA	77652	NM_146145	16451	Mm.289657	NM_146145	ENSMUSG00000028530	Jak1	AA960307|BAP004|C130039L05Rik	Janus kinase 1	protein-coding	0.015000	0.502488	
mm_21624.1	chr2	164277061	164277261	-	1	NA	NA	NA	1146	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.020000	0.422886	
mm_54550.1	chr6	36810074	36810274	-	1	NA	NA	NA	1187	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.035000	0.562189	
mm_64881.1	chr7	14616600	14616800	-	1	NA	NA	NA	5778	NR_045120	100417675	Mm.372763	NR_045119	ENSMUSG00000041596	Nlrp5-ps	Gm18756	NLR family, pyrin domain containing 5, pseudogene	pseudo	0.000000	0.303483	
mm_101559.1	chr11	33992895	33993095	-	1	NA	NA	NA	198	NM_001190886	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.025000	0.636816	
mm_41434.1	chr5	90904025	90904225	+	1	NA	NA	NA	226	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.030000	0.597015	
mm_107012.1	chr12	12022899	12023099	+	1	NA	NA	NA	-140100	NR_003964	627110	Mm.194735	NR_003964		Tubb2a-ps2	C79445	tubulin, beta 2a, pseudogene 2	pseudo	0.015000	0.398010	
mm_139354.1	chr17	50509672	50509872	+	1	NA	NA	NA	225	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.125000	0.751244	
mm_70028.1	chr7	142576360	142576560	-	1	NA	NA	NA	687	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.015000	0.542289	
mm_61636.1	chr7	80289903	80290103	+	1	NA	NA	NA	-4448	NM_145150	233406	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	0.020000	0.497512	
mm_38632.1	chr4	142239346	142239546	-	1	NA	NA	NA	-45	NM_001109685	71529	Mm.255986	NM_144531	ENSMUSG00000040606	Kazn	2310007B04Rik|9030409G11Rik|AI256607|AI666764|AW061099|Kaz|Kazrin	kazrin, periplakin interacting protein	protein-coding	0.085000	0.701493	
mm_43300.1	chr5	134600163	134600363	+	1	NA	NA	NA	14762	NM_022964	56743	Mm.391375	NM_020044	ENSMUSG00000040751	Lat2	AW125574|LAB|NTAL|WSCR5|Wbscr15|Wbscr5	linker for activation of T cells family, member 2	protein-coding	0.025000	0.467662	
mm_3191.1	chr1	135801475	135801675	+	1	NA	NA	NA	2064	NM_001112702	21952	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	0.005000	0.527363	46(AGCTTTTAAAAC,-,0.00),47(GCTTTTAAAACC,+,0.00),48(CTTTTAAAACCA,+,0.00)
mm_23833.1	chr3	81932573	81932773	+	1	NA	NA	NA	72	NM_177662	229445	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	0.080000	0.666667	
mm_73777.1	chr8	116921624	116921824	+	1	NA	NA	NA	-16	NM_028131	72155	Mm.23185	NM_028131	ENSMUSG00000031756	Cenpn	2610510J17Rik|AI426416|AW545024	centromere protein N	protein-coding	0.105000	0.676617	
mm_20664.1	chr2	132120046	132120246	-	1	NA	NA	NA	24962	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.005000	0.407960	
mm_18211.1	chr2	48949131	48949331	-	1	NA	NA	NA	36	NM_001177313	26428	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0.105000	0.691542	
mm_29299.1	chr3	107911189	107911389	-	1	NA	NA	NA	-15076	NR_015459	329735	Mm.270500	NM_177858	ENSMUSG00000086968	4933431E20Rik	-	RIKEN cDNA 4933431E20 gene	ncRNA	0.030000	0.552239	
mm_134739.1	chr16	23028969	23029169	-	1	NA	NA	NA	32	NM_201375	385643	Mm.440414	NM_201375	ENSMUSG00000060459	Kng2	-	kininogen 2	protein-coding	0.005000	0.512438	
mm_17024.1	chr2	19388840	19389040	-	1	NA	NA	NA	17304	NM_029619	76467	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	0.035000	0.557214	
mm_147408.1	chr18	44662187	44662387	-	1	NA	NA	NA	-21	NM_001085374	328949	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0.050000	0.597015	
mm_99337.1	chr11	101468118	101468318	+	1	NA	NA	NA	-120	NM_009708	11858	Mm.378883	NM_009708	ENSMUSG00000001313	Rnd2	Arhn|Rohn	Rho family GTPase 2	protein-coding	0.140000	0.840796	
mm_38931.1	chr4	150192448	150192648	-	1	NA	NA	NA	8587	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.020000	0.502488	
mm_4667.1	chr1	180382220	180382420	+	1	NA	NA	NA	-51771	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.020000	0.572139	
mm_44160.1	chr5	150665203	150665403	+	1	NA	NA	NA	309	NM_201369	381695	Mm.246934	NM_201369	ENSMUSG00000029655	N4bp2l2	2700092H06Rik|zag1	NEDD4 binding protein 2-like 2	protein-coding	0.080000	0.611940	
mm_122232.1	chr14	33185053	33185253	-	1	NA	NA	NA	-87	NM_001146022	545030	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.020000	0.542289	
mm_159900.1	chr6	38570408	38570608	+	1	NA	NA	NA	14785	NM_001331223	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.020000	0.358209	-65(GACTTTAAAAAA,-,0.00)
mm_139212.1	chr17	47728681	47728881	+	1	NA	NA	NA	1939	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.015000	0.507463	
mm_111136.1	chr12	81568125	81568325	-	1	NA	NA	NA	249	NM_020330	56622	Mm.117130	NM_020330	ENSMUSG00000008438	Adam21	Adam31	a disintegrin and metallopeptidase domain 21	protein-coding	0.015000	0.398010	
mm_115986.1	chr13	24328929	24329129	-	1	NA	NA	NA	1625	NM_001111110	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.025000	0.517413	-35(GGACCTAAAAGG,-,0.00)
mm_93746.1	chr10	120159512	120159712	-	1	NA	NA	NA	41925	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.005000	0.482587	
mm_147818.1	chr18	61754826	61755026	-	1	NA	NA	NA	28536	NR_029432	68982	Mm.441992	NR_029432	ENSMUSG00000098702	1500015A07Rik	-	RIKEN cDNA 1500015A07 gene	ncRNA	0.005000	0.293532	
mm_143317.1	chr17	66188123	66188323	-	1	NA	NA	NA	64703	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.005000	0.407960	
mm_49040.1	chr6	4759977	4760177	+	1	NA	NA	NA	12771	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.363184	
mm_68221.1	chr7	104412209	104412409	-	1	NA	NA	NA	52884	NM_009099	20128	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.000000	0.442786	
mm_83971.1	chr9	57202980	57203180	-	1	NA	NA	NA	27805	NR_033784	67319	Mm.234187	NR_033784	ENSMUSG00000100282	1700041C23Rik	-	RIKEN cDNA 1700041C23 gene	ncRNA	0.035000	0.532338	
mm_98408.1	chr11	94352081	94352281	+	1	NA	NA	NA	24180	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.055000	0.597015	
mm_71684.1	chr8	61224099	61224299	+	1	NA	NA	NA	28	NM_021506	59009	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	0.165000	0.810945	
mm_56198.1	chr6	88873960	88874160	-	1	NA	NA	NA	-16	NM_176973	319655	Mm.302613	NM_176973	ENSMUSG00000033152	Podxl2	D130074J02Rik|PODLX2	podocalyxin-like 2	protein-coding	0.020000	0.631841	
mm_135175.1	chr16	35938860	35939060	-	1	NA	NA	NA	67	NM_001013371	209200	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0.060000	0.611940	0(GGGTCTTTAGGG,-,0.00)
mm_124540.1	chr14	122464119	122464319	-	1	NA	NA	NA	1439	NM_022987	65100	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	0.115000	0.726368	
mm_91165.1	chr10	20688997	20689197	-	1	NA	NA	NA	35981	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.000000	0.422886	
mm_96301.1	chr11	63151124	63151324	+	1	NA	NA	NA	18421	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.020000	0.507463	
mm_139674.1	chr17	57412313	57412513	+	1	NA	NA	NA	53727	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.393035	
mm_21713.1	chr2	164608560	164608760	-	1	NA	NA	NA	4726	NM_001276432	277343	Mm.383292	NM_001080550	ENSMUSG00000070533	Wfdc8	Gm706	WAP four-disulfide core domain 8	protein-coding	0.050000	0.621891	
mm_93393.1	chr10	107494631	107494831	-	1	NA	NA	NA	-2	NM_008657	17878	Mm.11	NM_008657	ENSMUSG00000035923	Myf6	MRF4|bHLHc4|herculin	myogenic factor 6	protein-coding	0.010000	0.437811	
mm_139267.1	chr17	47785634	47785834	+	1	NA	NA	NA	-10	NM_011549	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.025000	0.611940	
mm_159790.1	chr5	108585302	108585502	-	1	NA	NA	NA	-35375	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.005000	0.527363	
mm_21410.1	chr2	158118783	158118983	-	1	NA	NA	NA	-27086	NR_040609	72340	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0.010000	0.577114	
mm_160329.1	chr8	4134435	4134635	+	1	NA	NA	NA	-201	NM_027343	70192	Mm.390006	NM_027343	ENSMUSG00000079168	Cd209g	2310066I10Rik|AI481039|SIGNR7	CD209g antigen	protein-coding	0.005000	0.472637	
mm_38180.1	chr4	135272641	135272841	-	1	NA	NA	NA	19	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.120000	0.726368	
mm_40223.1	chr5	37245753	37245953	+	1	NA	NA	NA	89	NM_007765	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.085000	0.711443	
mm_156066.1	chrX	109160845	109161045	+	1	NA	NA	NA	-35811	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.000000	0.328358	-34(GGGTATATAAGT,-,0.00)
mm_151621.1	chr19	3905181	3905381	-	1	NA	NA	NA	-51	NM_016921	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.005000	0.567164	
mm_15166.1	chr2	154011346	154011546	+	1	NA	NA	NA	3170	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.010000	0.467662	-39(CTCCATTAAAAC,-,0.00)
mm_104740.1	chr11	98400320	98400520	-	1	NA	NA	NA	70	NM_001033537	320655	Mm.86519	NM_001033537	ENSMUSG00000038208	Pgap3	CAB2|D430035D22Rik|Perld1	post-GPI attachment to proteins 3	protein-coding	0.090000	0.621891	
mm_4113.1	chr1	167689017	167689217	+	1	NA	NA	NA	-441	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding	0.105000	0.696517	
mm_98344.1	chr11	93099208	93099408	+	1	NA	NA	NA	18	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	0.100000	0.626866	
mm_143024.1	chr17	56571407	56571607	-	1	NA	NA	NA	13076	NM_001029979	224902	Mm.214973	NM_001029979	ENSMUSG00000042625	Safb2	AA389433|AI255170|mKIAA0138	scaffold attachment factor B2	protein-coding	0.020000	0.502488	-72(CCTTATATAGGT,+,0.00)
mm_63783.1	chr7	131876986	131877186	+	1	NA	NA	NA	-89374	NM_173410	233919	Mm.208740	NM_173410	ENSMUSG00000040125	Gpr26	9630036A11Rik|A730021D22	G protein-coupled receptor 26	protein-coding	0.010000	0.507463	
mm_136220.1	chr16	90052266	90052466	-	1	NA	NA	NA	-77667	NM_001145886	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.005000	0.512438	
mm_159186.1	chr2	112559343	112559543	+	1	NA	NA	NA	-239	NM_001165935	74268	Mm.315125	NM_028844	ENSMUSG00000003604	Aven	1700013A01Rik|1700056A21Rik|mAven-L|mAven-S	apoptosis, caspase activation inhibitor	protein-coding	0.025000	0.482587	
mm_55145.1	chr6	51466122	51466322	-	1	NA	NA	NA	3672	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.010000	0.407960	
mm_146199.1	chr18	76241826	76242026	+	1	NA	NA	NA	225	NM_010754	17126	Mm.152699	NM_010754	ENSMUSG00000024563	Smad2	7120426M23Rik|Madh2|Madr2|Smad-2|mMad2	SMAD family member 2	protein-coding	0.160000	0.805970	
mm_63740.1	chr7	130900479	130900679	+	1	NA	NA	NA	-7689	NR_106028	102466219		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0.015000	0.402985	
mm_100394.1	chr11	119390414	119390614	+	1	NA	NA	NA	42	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.075000	0.641791	
mm_161410.1	chr15	7810783	7810983	+	1	NA	NA	NA	835	NM_001301332	14573	Mm.4679	NM_010275	ENSMUSG00000022144	Gdnf	AI385739|ATF	glial cell line derived neurotrophic factor	protein-coding	0.135000	0.746269	
mm_115731.1	chr13	17752882	17753082	-	1	NA	NA	NA	5509	NR_035412	100316665		NR_035412	ENSMUSG00000080574	Mir466i	Mirn466i|mmu-mir-466i	microRNA 466i	ncRNA	0.005000	0.313433	
mm_12008.1	chr2	57317326	57317526	+	1	NA	NA	NA	79044	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.025000	0.432836	
mm_69814.1	chr7	141263863	141264063	-	1	NA	NA	NA	2461	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.020000	0.582090	
mm_61421.1	chr7	73618602	73618802	+	1	NA	NA	NA	-60307	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.115000	0.651741	
mm_106223.1	chr11	117083619	117083819	-	1	NA	NA	NA	6371	NR_105853	102465258		NR_105853	ENSMUSG00000104740	Mir6516	mmu-mir-6516	microRNA 6516	ncRNA	0.035000	0.552239	
mm_112585.1	chr13	13765441	13765641	+	1	NA	NA	NA	-18518	NM_001302997	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0.010000	0.402985	
mm_113556.1	chr13	38151249	38151449	+	1	NA	NA	NA	55	NM_023842	109620	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding	0.100000	0.736318	
mm_86257.1	chr9	121586841	121587041	-	1	NA	NA	NA	-79	NR_040740	75384	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	0.015000	0.467662	
mm_43617.1	chr5	138097550	138097750	+	1	NA	NA	NA	12566	NM_029869	74570	Mm.213114	NM_029869	ENSMUSG00000029729	Zkscan1	5930429A01Rik|9130423L19Rik|9230118B16Rik|AI646829|AI788588|C87323|KOX18|PHZ-37|ZNF139	zinc finger with KRAB and SCAN domains 1	protein-coding	0.005000	0.368159	
mm_48786.1	chr5	148589773	148589973	-	1	NA	NA	NA	-37085	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.005000	0.547264	-36(CACTATAAAAGG,-,0.00)
mm_80195.1	chr9	72396236	72396436	+	1	NA	NA	NA	-42193	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.005000	0.467662	
mm_112204.1	chr12	113426798	113426998	-	1	NA	NA	NA	-62667	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.492537	
mm_170371.1	chr18	54699131	54699331	-	1	NA	NA	NA	87487	NR_045400	328957	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	0.055000	0.482587	
mm_151294.1	chr19	55425148	55425348	+	1	NA	NA	NA	109191	NM_001293686	53611	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.005000	0.258706	
mm_44693.1	chr5	30232288	30232488	-	1	NA	NA	NA	-193	NM_027652	28042	Mm.168854	NM_027652	ENSMUSG00000075703	Selenoi	4933402G07Rik|AI448296|AI452230|C79563|D5Wsu178e|Ept1|SELI|mKIAA1724	selenoprotein I	protein-coding	0.055000	0.552239	
mm_80251.1	chr9	72749284	72749484	+	1	NA	NA	NA	-57890	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.015000	0.522388	
mm_169132.1	chr1	35885873	35886073	-	1	NA	NA	NA	-182427	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.025000	0.517413	85(TGCCTTTAAAAG,-,0.00),86(GCCTTTAAAAGC,+,0.00),86(GCCTTTAAAAGC,-,0.00),87(CCTTTAAAAGCC,+,0.00)
mm_91680.1	chr10	43656231	43656431	-	1	NA	NA	NA	62904	NR_033558	414125	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	0.000000	0.452736	
mm_36090.1	chr4	58482004	58482204	-	1	NA	NA	NA	17299	NM_001290486	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.005000	0.353234	
mm_54393.1	chr6	31220234	31220434	-	1	NA	NA	NA	-17	NR_040258	73652	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.060000	0.661692	
mm_162882.1	chr10	101963643	101963843	-	1	NA	NA	NA	191051	NR_037211	100526516		NR_037211	ENSMUSG00000092952	Mir3059	mir-3059|mmu-mir-3059	microRNA 3059	ncRNA	0.020000	0.427861	-87(GGCTCTAAATGA,-,0.00),-54(CCTTTTATGATC,+,0.00)
mm_71979.1	chr8	70594389	70594589	+	1	NA	NA	NA	8	NM_023627	71780	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.085000	0.631841	
mm_98158.1	chr11	87657524	87657724	+	1	NA	NA	NA	-5463	NM_172448	207742	Mm.440230	NM_172448	ENSMUSG00000034177	Rnf43	4732452J19Rik	ring finger protein 43	protein-coding	0.015000	0.407960	
mm_122666.1	chr14	51913971	51914171	-	1	NA	NA	NA	-583	NM_013864	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.050000	0.651741	35(CTATTTATAGCG,+,0.00)
mm_33707.1	chr4	133672603	133672803	+	1	NA	NA	NA	-56	NM_001145956	230801	Mm.217004	NM_178698	ENSMUSG00000043257	Pigv	B330013B03|D430024F16Rik	phosphatidylinositol glycan anchor biosynthesis, class V	protein-coding	0.145000	0.781095	
mm_91897.1	chr10	60002941	60003141	-	1	NA	NA	NA	94	NM_001347451	52717	Mm.21793	NM_025514	ENSMUSG00000020107	Anapc16	2310005G07Rik|APC16|D10Ertd641e	anaphase promoting complex subunit 16	protein-coding	0.120000	0.691542	
mm_45639.1	chr5	76905286	76905486	-	1	NA	NA	NA	128	NM_173765	231326	Mm.39271	NM_173765	ENSMUSG00000055923	Aasdh	A230062G08Rik|A830035E16|Acsf4|U26	aminoadipate-semialdehyde dehydrogenase	protein-coding	0.095000	0.656716	
mm_161327.1	chr14	50126601	50126801	+	1	NA	NA	NA	148	NM_146319	258316	Mm.223012	NM_146319	ENSMUSG00000059488	Olfr727	MOR246-2	olfactory receptor 727	protein-coding	0.005000	0.442786	76(TCTTTTATAGAT,+,0.00)
mm_170190.1	chr17	6493079	6493279	-	1	NA	NA	NA	-42185	NR_033520	547127	Mm.297552	NM_001045538		Tmem181b-ps	Tmem181b	transmembrane protein 181B, pseudogene	pseudo	0.080000	0.597015	
mm_157278.1	chrX	20617360	20617560	-	1	NA	NA	NA	-43	NM_001167775	236732	Mm.279194	NM_145627	ENSMUSG00000031060	Rbm10	E430039K10Rik	RNA binding motif protein 10	protein-coding	0.065000	0.487562	
mm_8648.1	chr1	156439214	156439414	-	1	NA	NA	NA	-18399	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.010000	0.268657	31(CTTTTTAAAAAC,+,0.00)
mm_149477.1	chr19	11749895	11750095	+	1	NA	NA	NA	2436	NM_008118	14603	Mm.456	NM_008118	ENSMUSG00000024682	Gif	AV073125	gastric intrinsic factor	protein-coding	0.020000	0.527363	
mm_115927.1	chr13	23571036	23571236	-	1	NA	NA	NA	84	NM_178187	319166	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	0.055000	0.497512	
mm_10638.1	chr2	20519522	20519722	+	1	NA	NA	NA	109	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.085000	0.701493	
mm_30568.1	chr4	3790293	3790493	+	1	NA	NA	NA	45262	NM_026147	67427	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.005000	0.363184	-43(GCTTTAAAACAC,+,0.00)
mm_10376.1	chr2	11777682	11777882	+	1	NA	NA	NA	29	NM_177268	320816	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0.095000	0.691542	
mm_159434.1	chr3	116614351	116614551	-	1	NA	NA	NA	136	NM_030016	229780	Mm.259648	NM_030016	ENSMUSG00000033439	Trmt13	4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76	tRNA methyltransferase 13	protein-coding	0.020000	0.487562	
mm_13831.1	chr2	119325715	119325915	+	1	NA	NA	NA	31	NM_019454	54485	Mm.143719	NM_019454	ENSMUSG00000027314	Dll4	Delta4	delta-like 4 (Drosophila)	protein-coding	0.040000	0.582090	
mm_5321.1	chr1	22805901	22806101	-	1	NA	NA	NA	-277	NM_001012624	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.135000	0.805970	
mm_76867.1	chr8	105496946	105497146	-	1	NA	NA	NA	-176	NM_175160	70796	Mm.100917	NM_175160	ENSMUSG00000039199	Zdhhc1	4432412D04Rik	zinc finger, DHHC domain containing 1	protein-coding	0.115000	0.721393	
mm_29414.1	chr3	108972329	108972529	-	1	NA	NA	NA	31872	NM_001078646	66715	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0.005000	0.432836	
mm_48960.1	chr6	4540947	4541147	+	1	NA	NA	NA	35429	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.010000	0.393035	
mm_104302.1	chr11	90553923	90554123	-	1	NA	NA	NA	84085	NM_011505	20913	Mm.207203	NM_011505	ENSMUSG00000020546	Stxbp4	6030470M02Rik|Synip	syntaxin binding protein 4	protein-coding	0.010000	0.358209	
mm_110030.1	chr12	16800894	16801094	-	1	NA	NA	NA	-108	NM_015764	268527	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	0.075000	0.661692	
mm_139173.1	chr17	47588448	47588648	+	1	NA	NA	NA	-4919	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.010000	0.432836	
mm_139701.1	chr17	57451311	57451511	+	1	NA	NA	NA	92725	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.442786	
mm_110122.1	chr12	26444011	26444211	-	1	NA	NA	NA	12341	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.308458	
mm_137245.1	chr17	24488525	24488725	+	1	NA	NA	NA	-158	NM_027937	268932	Mm.70989	NM_027937	ENSMUSG00000033597	Caskin1	3300002N10Rik|C130061I24|C630036E02Rik|mKIAA1306	CASK interacting protein 1	protein-coding	0.175000	0.825871	
mm_100010.1	chr11	114852131	114852331	+	1	NA	NA	NA	201	NM_147217	70355	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.105000	0.746269	
mm_106096.1	chr11	116198922	116199122	-	1	NA	NA	NA	23	NM_001271898	11430	Mm.356689	NM_015729	ENSMUSG00000020777	Acox1	AOX|Acox|D130055E20Rik|Paox	acyl-Coenzyme A oxidase 1, palmitoyl	protein-coding	0.070000	0.636816	
mm_150067.1	chr19	29386282	29386482	+	1	NA	NA	NA	18944	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.000000	0.318408	
mm_165956.1	chr4	87229947	87230147	-	1	NA	NA	NA	493	NM_172426	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	0.045000	0.611940	
mm_138969.1	chr17	44777214	44777414	+	1	NA	NA	NA	143	NM_178652	109115	Mm.431327	NM_178652	ENSMUSG00000038954	Supt3	2310066G22Rik|AI315192|SPT3|SPT3L|Supt3h	suppressor of Ty 3	protein-coding	0.090000	0.686567	
mm_27931.1	chr3	79567656	79567856	-	1	NA	NA	NA	-77	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.185000	0.815920	
mm_136289.1	chr16	91406745	91406945	-	1	NA	NA	NA	610	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.020000	0.592040	
mm_106947.1	chr12	8771286	8771486	+	1	NA	NA	NA	-10	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.065000	0.661692	
mm_24407.1	chr3	90433706	90433906	+	1	NA	NA	NA	-170	NM_178876	229543	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	0.080000	0.601990	
mm_79111.1	chr9	46270074	46270274	+	1	NA	NA	NA	1566	NM_080434	66113	Mm.29738	NM_080434	ENSMUSG00000032079	Apoa5	1300007O05Rik|Apoav|RAP3	apolipoprotein A-V	protein-coding	0.060000	0.626866	
mm_60753.1	chr7	45486280	45486480	+	1	NA	NA	NA	117	NM_001290999	56734	Mm.439742	NM_008807	ENSMUSG00000023467	Tulp2	Pdet	tubby-like protein 2	protein-coding	0.025000	0.572139	
mm_71028.1	chr8	33599532	33599732	+	1	NA	NA	NA	11	NM_017374	19053	Mm.29301	NM_017374	ENSMUSG00000009630	Ppp2cb	AI115466|D8Ertd766e|PP2Ac	protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform	protein-coding	0.165000	0.771144	
mm_127311.1	chr15	100246094	100246294	+	1	NA	NA	NA	18335	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.030000	0.482587	
mm_57176.1	chr6	122848111	122848311	-	1	NA	NA	NA	7946	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.015000	0.462687	
mm_23296.1	chr3	52268299	52268499	+	1	NA	NA	NA	62	NM_019739	56458	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.170000	0.751244	
mm_44385.1	chr5	17828787	17828987	-	1	NA	NA	NA	7009	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.030000	0.517413	
mm_64638.1	chr7	3984112	3984312	-	1	NA	NA	NA	-68711	NR_028115	18726	Mm.440989	NM_011090	ENSMUSG00000030427	Lilra6	7M1|Pira3	leukocyte immunoglobulin-like receptor, subfamily A (with TM domain), member 6	protein-coding	0.015000	0.437811	
mm_77823.1	chr9	3403978	3404178	+	1	NA	NA	NA	-7	NM_027545	244672	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	0.075000	0.477612	
mm_127157.1	chr15	98626584	98626784	+	1	NA	NA	NA	-5644	NM_001044741	12297	Mm.3544	NM_007581	ENSMUSG00000003352	Cacnb3	Beta3|CAB3|Ca(v)beta3|Cchb3	calcium channel, voltage-dependent, beta 3 subunit	protein-coding	0.015000	0.497512	
mm_94371.1	chr11	5099173	5099373	+	1	NA	NA	NA	0	NM_001290492	279766	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0.115000	0.636816	
mm_135234.1	chr16	36957227	36957427	-	1	NA	NA	NA	21809	NM_001037321	207215	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0.020000	0.572139	
mm_7209.1	chr1	93076149	93076349	-	1	NA	NA	NA	6231	NM_001294150	16560	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.015000	0.552239	
mm_45190.1	chr5	52115856	52116056	-	1	NA	NA	NA	20061	NR_105845	102466648		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0.145000	0.721393	
mm_5153.1	chr1	9943499	9943699	-	1	NA	NA	NA	519	NR_024067	73824	Mm.28311	NR_024067	ENSMUSG00000098234	Snhg6	1110008H02Rik	small nucleolar RNA host gene 6	ncRNA	0.015000	0.323383	39(CACTCTAAAAAG,-,0.00)
mm_27411.1	chr3	51394799	51394999	-	1	NA	NA	NA	1648	NM_026358	67749	Mm.273339	NM_026358	ENSMUSG00000037161	Mgarp	4930583H14Rik|AI195347|CESP-1|HUMMR|Osap|Qsap	mitochondria localized glutamic acid rich protein	protein-coding	0.005000	0.328358	
mm_36223.1	chr4	62519967	62520167	-	1	NA	NA	NA	-4	NM_008525	17025	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0.095000	0.696517	
mm_63395.1	chr7	127296142	127296342	+	1	NA	NA	NA	-18	NM_001253873	16408	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.015000	0.517413	
mm_53376.1	chr6	129471590	129471790	+	1	NA	NA	NA	1089	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.020000	0.388060	
mm_154508.1	chrM	12035	12235	-	1	NA	NA	NA	NA	NA									0.020000	0.363184	
mm_103885.1	chr11	83574238	83574438	-	1	NA	NA	NA	4298	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.025000	0.482587	
mm_32434.1	chr4	107200583	107200783	+	1	NA	NA	NA	-8497	NM_001081272	546840	Mm.331755	NM_001081272	ENSMUSG00000070877	Ldlrad1	OTTMUSG00000008594	low density lipoprotein receptor class A domain containing 1	protein-coding	0.005000	0.318408	
mm_88928.1	chr10	81257193	81257393	+	1	NA	NA	NA	-6	NM_001285854	17179	Mm.2918	NM_010768	ENSMUSG00000004933	Matk	CHK|HYL|Ntk|p56ntk	megakaryocyte-associated tyrosine kinase	protein-coding	0.070000	0.671642	
mm_163300.1	chr11	120479564	120479764	+	1	NA	NA	NA	-5005	NM_027204	56282	Mm.133851	NM_027204	ENSMUSG00000039640	Mrpl12	0610034O11Rik|1500031N16Rik|MRP-L12|Rpml12	mitochondrial ribosomal protein L12	protein-coding	0.045000	0.616915	
mm_50735.1	chr6	52713964	52714164	+	1	NA	NA	NA	335	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.120000	0.716418	
mm_127344.1	chr15	100615549	100615749	+	1	NA	NA	NA	-13	NM_011873	23994	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0.115000	0.661692	
mm_98725.1	chr11	96351516	96351716	+	1	NA	NA	NA	-16	NM_134032	103889	Mm.281153	NM_134032	ENSMUSG00000075588	Hoxb2	AI894218|Hox-2.8|Hoxbes2	homeobox B2	protein-coding	0.050000	0.462687	
mm_171113.1	chr3	13821293	13821493	-	1	NA	NA	NA	-124979	NM_001163329	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.050000	0.487562	-68(CTCCTTAAGAGG,-,0.00)
mm_81448.1	chr9	109816483	109816683	+	1	NA	NA	NA	-44	NM_183136	78709	Mm.99613	NM_183136	ENSMUSG00000050074	Spink8	C630041L24Rik	serine peptidase inhibitor, Kazal type 8	protein-coding	0.025000	0.507463	
mm_136225.1	chr16	90143743	90143943	-	1	NA	NA	NA	1606	NR_033476	100038709	Mm.484070	NR_033476		Gm10789	ENSMUSG00000074924	predicted gene 10789	ncRNA	0.120000	0.726368	
mm_4827.1	chr1	185487236	185487436	+	1	NA	NA	NA	-9970	NR_033600	114668	Mm.379303	NR_033600	ENSMUSG00000102185	5033404E19Rik	-	NSA2 ribosome biogenesis homolog pseudogene	pseudo	0.015000	0.547264	
mm_157761.1	chrX	73495147	73495347	-	1	NA	NA	NA	-7839	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.000000	0.502488	
mm_80409.1	chr9	77656575	77656775	+	1	NA	NA	NA	19943	NM_172925	244923	Mm.138238	NM_172925	ENSMUSG00000044938	Klhl31	9830147P19Rik|D930047P17Rik|Kbtbd1	kelch-like 31	protein-coding	0.010000	0.313433	-60(CCTTATATGGAC,+,0.00)
mm_68867.1	chr7	126428892	126429092	-	1	NA	NA	NA	225	NM_030566	70314	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	0.125000	0.716418	
mm_93087.1	chr10	89621128	89621328	-	1	NA	NA	NA	21	NM_182959	216227	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	0.020000	0.601990	
mm_85221.1	chr9	97018729	97018929	-	1	NA	NA	NA	-474	NM_145134	211949	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0.110000	0.736318	
mm_117808.1	chr13	97711084	97711284	-	1	NA	NA	NA	151184	NR_046157	328314	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.015000	0.467662	-32(TGTTCTAAAAGG,-,0.00)
mm_115816.1	chr13	19732842	19733042	-	1	NA	NA	NA	9	NM_175688	319293	Mm.246657	NM_175688	ENSMUSG00000047462	A530099J19Rik	-	RIKEN cDNA A530099J19 gene	protein-coding	0.020000	0.437811	
mm_115284.1	chr13	111867837	111868037	+	1	NA	NA	NA	1	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.030000	0.502488	
mm_78490.1	chr9	32701202	32701402	+	1	NA	NA	NA	5260	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.025000	0.567164	
mm_123544.1	chr14	66824749	66824949	-	1	NA	NA	NA	43751	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.030000	0.557214	
mm_90958.1	chr10	13301012	13301212	-	1	NA	NA	NA	23048	NM_001195096	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.005000	0.472637	
mm_89757.1	chr10	99443616	99443816	+	1	NA	NA	NA	-165455	NR_038019	100504202	Mm.403801	NR_038019		Gm20110	-	predicted gene, 20110	ncRNA	0.010000	0.368159	
mm_96045.1	chr11	59557395	59557595	+	1	NA	NA	NA	14243	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.005000	0.348259	
mm_7165.1	chr1	92048425	92048625	-	1	NA	NA	NA	131816	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.005000	0.358209	
mm_134029.1	chr16	5010558	5010758	-	1	NA	NA	NA	2895	NM_133185	66049	Mm.27792	NM_133185	ENSMUSG00000022540	Rogdi	0610011C19Rik|AU020118|C76152|Lzf	rogdi homolog	protein-coding	0.005000	0.547264	
mm_18207.1	chr2	48911832	48912032	-	1	NA	NA	NA	37335	NM_001177313	26428	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0.000000	0.378109	
mm_62183.1	chr7	97480812	97481012	+	1	NA	NA	NA	-44	NM_027256	101861	Mm.27383	NM_027256	ENSMUSG00000025133	Ints4	2610034N24Rik|AA692684|AW493223	integrator complex subunit 4	protein-coding	0.025000	0.572139	
mm_80478.1	chr9	78204180	78204380	+	1	NA	NA	NA	12314	NM_010357	14860	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	0.020000	0.497512	-92(AGCCATTAAAGA,-,0.00)
mm_152711.1	chr19	17372770	17372970	-	1	NA	NA	NA	-26	NM_010265	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.005000	0.427861	
mm_165122.1	chr2	4017591	4017791	+	1	NA	NA	NA	8	NM_001347086	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.005000	0.537313	
mm_6766.1	chr1	84105660	84105860	-	1	NA	NA	NA	113201	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.427861	
mm_91307.1	chr10	24920602	24920802	-	1	NA	NA	NA	6768	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.015000	0.542289	
mm_76456.1	chr8	85286306	85286506	-	1	NA	NA	NA	13091	NM_022997	65114	Mm.296520	NM_022997	ENSMUSG00000031696	Vps35	AI647796|Mem3	VPS35 retromer complex component	protein-coding	0.015000	0.407960	
mm_82206.1	chr9	124103320	124103520	+	1	NA	NA	NA	1237	NM_009915	12772	Mm.6272	NM_009915	ENSMUSG00000049103	Ccr2	Cc-ckr-2|Ccr2a|Ccr2b|Ckr2|Ckr2a|Ckr2b|Cmkbr2|mJe-r	chemokine (C-C motif) receptor 2	protein-coding	0.000000	0.442786	
mm_139064.1	chr17	46520697	46520897	+	1	NA	NA	NA	24008	NM_207161	381101	Mm.35801	NM_207161	ENSMUSG00000040658	Dnph1	C76683|Rcl	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	protein-coding	0.055000	0.631841	
mm_5194.1	chr1	13360604	13360804	-	1	NA	NA	NA	11725	NM_001302702	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.000000	0.378109	
mm_123928.1	chr14	73365724	73365924	-	1	NA	NA	NA	19447	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.030000	0.472637	
mm_98811.1	chr11	97188375	97188575	+	1	NA	NA	NA	-583	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.145000	0.721393	
mm_111805.1	chr12	105031958	105032158	-	1	NA	NA	NA	221	NR_003145	69434	Mm.380736	NR_003145		Snhg10	1700026B20Rik|AI642517	small nucleolar RNA host gene 10	ncRNA	0.040000	0.487562	60(TTTTATAAAGGG,+,0.00)
mm_129653.1	chr15	80896795	80896995	-	1	NA	NA	NA	-43144	NR_039573	100628612		NR_039573	ENSMUSG00000092868	Mir5113	mir-5113|mmu-mir-5113|mu-mir-5113	microRNA 5113	ncRNA	0.035000	0.537313	
mm_118463.1	chr14	11227413	11227613	+	1	NA	NA	NA	-54964	NR_105811	102466641		NR_105811	ENSMUSG00000099218	Mir5124b	Gm27681|mmu-mir-5124b	microRNA 5124b	ncRNA	0.020000	0.402985	
mm_15806.1	chr2	164486777	164486977	+	1	NA	NA	NA	0	NM_001048228	52840	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	0.060000	0.592040	-82(CCCCTTTTAGGG,-,0.00),-80(CCTTTTAGGGAA,+,0.00)
mm_70408.1	chr8	11398575	11398775	+	1	NA	NA	NA	-79254	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.025000	0.592040	
mm_66616.1	chr7	45466798	45466998	-	1	NA	NA	NA	0	NM_007527	12028	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.125000	0.666667	
mm_145264.1	chr18	52646116	52646316	+	1	NA	NA	NA	-4	NM_030097	78414	Mm.273327	NM_030097	ENSMUSG00000024532	1700034E13Rik	-	RIKEN cDNA 1700034E13 gene	protein-coding	0.005000	0.472637	-67(CCTCATAAAGTG,+,0.00)
mm_55764.1	chr6	78466721	78466921	-	1	NA	NA	NA	2053	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.005000	0.492537	
mm_165343.1	chr2	118011817	118012017	-	1	NA	NA	NA	99285	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA	0.020000	0.477612	
mm_48823.1	chr5	149051514	149051714	-	1	NA	NA	NA	2	NM_001313894	15289	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.105000	0.631841	
mm_82450.1	chr9	15357626	15357826	-	1	NA	NA	NA	62	NM_176976	319675	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	0.110000	0.696517	
mm_84188.1	chr9	60193611	60193811	-	1	NA	NA	NA	-52491	NM_172444	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.010000	0.462687	
mm_36418.1	chr4	78211874	78212074	-	1	NA	NA	NA	-79	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.180000	0.805970	
mm_149271.1	chr19	10582197	10582397	+	1	NA	NA	NA	-4911	NR_126092	72982	Mm.391194	NM_028411	ENSMUSG00000024666	Tmem138	1700113I01Rik|2900055D14Rik	transmembrane protein 138	protein-coding	0.025000	0.527363	
mm_22776.1	chr3	20306837	20307037	+	1	NA	NA	NA	-31204	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.005000	0.547264	-35(GCCCTTATATAG,-,0.00),-33(CCTTATATAGCA,+,0.00)
mm_93892.1	chr10	125328863	125329063	-	1	NA	NA	NA	-428	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.015000	0.522388	
mm_119690.1	chr14	53544883	53545083	+	1	NA	NA	NA	708946	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.582090	
mm_49073.1	chr6	5789442	5789642	+	1	NA	NA	NA	63903	NM_001191026	13426	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0.000000	0.353234	
mm_47061.1	chr5	116392670	116392870	-	1	NA	NA	NA	30094	NM_030704	80888	Mm.21549	NM_030704	ENSMUSG00000041548	Hspb8	AU018630|AW413033|Cryac|D5Ucla4|E2IG1|H11|H11K|HSP20-like|HSP22	heat shock protein 8	protein-coding	0.015000	0.562189	
mm_170490.1	chr19	18671057	18671257	+	1	NA	NA	NA	377	NM_026120	67383	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	0.165000	0.751244	
mm_54529.1	chr6	36715326	36715526	-	1	NA	NA	NA	95935	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.000000	0.278607	
mm_70138.1	chr7	143296420	143296620	-	1	NA	NA	NA	27	NR_001461	63830	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.065000	0.587065	
mm_102449.1	chr11	59787190	59787390	-	1	NA	NA	NA	-68	NR_110894	194908	Mm.344651	NM_183139	ENSMUSG00000043648	Pld6	4933433K01Rik|Gm10|Zuc|mZuc|mitoPLD	phospholipase D family, member 6	protein-coding	0.095000	0.681592	
mm_161918.1	chr18	67638805	67639005	-	1	NA	NA	NA	2431	NM_001081073	225659	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0.020000	0.547264	
mm_1672.1	chr1	74791950	74792150	+	1	NA	NA	NA	31	NM_009518	22409	Mm.5130	NM_009518	ENSMUSG00000026167	Wnt10a	-	wingless-type MMTV integration site family, member 10A	protein-coding	0.095000	0.751244	
mm_9556.1	chr1	173942359	173942559	-	1	NA	NA	NA	33	NM_001302649	15950	Mm.463437	NM_008328	ENSMUSG00000039997	Ifi203	Mndal	interferon activated gene 203	protein-coding	0.005000	0.437811	
mm_41414.1	chr5	90794438	90794638	+	1	NA	NA	NA	4	NM_011339	20309	Mm.64326	NM_011339	ENSMUSG00000029375	Cxcl15	Il8|Scyb15|lungkine|weche	chemokine (C-X-C motif) ligand 15	protein-coding	0.015000	0.532338	-36(GAGCATATAAAG,-,0.00)
mm_3706.1	chr1	153899845	153900045	+	1	NA	NA	NA	16	NM_008131	14645	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.055000	0.601990	
mm_81883.1	chr9	119341393	119341593	+	1	NA	NA	NA	199	NM_130864	113868	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	0.100000	0.676617	
mm_134691.1	chr16	22535294	22535494	-	1	NA	NA	NA	-3210	NR_106170	102465887		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0.020000	0.492537	
mm_5039.1	chr1	193611118	193611318	+	1	NA	NA	NA	-103688	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.000000	0.507463	
mm_128022.1	chr15	24857439	24857639	-	1	NA	NA	NA	556225	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.015000	0.452736	
mm_81238.1	chr9	107928362	107928562	+	1	NA	NA	NA	-7	NM_026338	67722	Mm.390222	NM_026338	ENSMUSG00000066368	Actl11	4921517D21Rik	actin-like 11	protein-coding	0.010000	0.616915	
mm_22081.1	chr2	168765248	168765448	-	1	NA	NA	NA	1853	NM_201395	99377	Mm.434054	NM_175303	ENSMUSG00000027547	Sall4	5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20	sal-like 4 (Drosophila)	protein-coding	0.040000	0.577114	
mm_25977.1	chr3	133091838	133092038	+	1	NA	NA	NA	83	NM_027927	71793	Mm.246726	NM_027927	ENSMUSG00000028016	Ints12	1110020M19Rik|2810027J24Rik|4930529N21Rik|A230056J18Rik|AI666778|Phf22|int12	integrator complex subunit 12	protein-coding	0.100000	0.641791	
mm_109463.1	chr12	111202674	111202874	+	1	NA	NA	NA	-18283	NR_130987	78062	Mm.427248	NR_130987	ENSMUSG00000083193	4930595D18Rik	-	RIKEN cDNA 4930595D18 gene	ncRNA	0.015000	0.467662	
mm_110068.1	chr12	21389472	21389672	-	1	NA	NA	NA	-15940	NM_009615	11491	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	0.000000	0.427861	
mm_9446.1	chr1	172590497	172590697	-	1	NA	NA	NA	-29	NM_029084	74748	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	0.020000	0.532338	
mm_32641.1	chr4	115056951	115057151	+	1	NA	NA	NA	625	NM_011527	21349	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.090000	0.661692	
mm_156367.1	chrX	139610498	139610698	+	1	NA	NA	NA	-22	NM_023270	66889	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	0.115000	0.696517	
mm_141085.1	chr17	25941854	25942054	-	1	NA	NA	NA	35	NM_001291025	14755	Mm.362054	NM_011822	ENSMUSG00000025728	Pigq	Gpi1|Gpi1h|Gpi1p|Gpih	phosphatidylinositol glycan anchor biosynthesis, class Q	protein-coding	0.140000	0.711443	
mm_76856.1	chr8	105403712	105403912	-	1	NA	NA	NA	9690	NM_177791	279499	Mm.67628	NM_177791	ENSMUSG00000051648	Kctd19	4922504H04Rik	potassium channel tetramerisation domain containing 19	protein-coding	0.015000	0.437811	
mm_41317.1	chr5	90471718	90471918	+	1	NA	NA	NA	10948	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.000000	0.343284	
mm_73402.1	chr8	105880807	105881007	+	1	NA	NA	NA	26	NM_181594	234699	Mm.28979	NM_181594	ENSMUSG00000036270	Edc4	BC022641	enhancer of mRNA decapping 4	protein-coding	0.075000	0.611940	
mm_95638.1	chr11	53719352	53719552	+	1	NA	NA	NA	-1342	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.010000	0.512438	
mm_52086.1	chr6	97829283	97829483	+	1	NA	NA	NA	22325	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.457711	
mm_102940.1	chr11	69602663	69602863	-	1	NA	NA	NA	3197	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.035000	0.542289	
mm_142376.1	chr17	44735482	44735682	-	1	NA	NA	NA	594	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.055000	0.646766	
mm_136022.1	chr16	76339199	76339399	-	1	NA	NA	NA	33750	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.030000	0.432836	
mm_14089.1	chr2	125153927	125154127	+	1	NA	NA	NA	1427	NM_001079690	20495	Mm.3914	NM_011389	ENSMUSG00000027202	Slc12a1	AI788571|D630042G03Rik|Nkcc2|mBSC1|urehr3	solute carrier family 12, member 1	protein-coding	0.040000	0.552239	
mm_131146.1	chr16	6517872	6518072	+	1	NA	NA	NA	542385	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA	0.000000	0.402985	
mm_72130.1	chr8	71881653	71881853	+	1	NA	NA	NA	-315	NM_145624	236193	Mm.290790	NM_145624	ENSMUSG00000056019	Zfp709	BC021921|GIOT-4|HIT-40	zinc finger protein 709	protein-coding	0.045000	0.552239	
mm_15068.1	chr2	153069119	153069319	+	1	NA	NA	NA	3264	NM_145536	228788	Mm.299979	NM_145536	ENSMUSG00000027474	Ccm2l	-	cerebral cavernous malformation 2-like	protein-coding	0.030000	0.557214	
mm_141076.1	chr17	25844440	25844640	-	1	NA	NA	NA	311	NM_145999	214952	Mm.40907	NM_145999	ENSMUSG00000025733	Rhot2	Arht2|Miro2	ras homolog family member T2	protein-coding	0.065000	0.691542	
mm_39815.1	chr5	30711494	30711694	+	1	NA	NA	NA	-301	NM_023047	65254	Mm.27732	NM_023047	ENSMUSG00000029168	Dpysl5	CRAM|CRMP-5|Crmp5	dihydropyrimidinase-like 5	protein-coding	0.055000	0.616915	
mm_72782.1	chr8	86745517	86745717	+	1	NA	NA	NA	-82	NR_027829	666945	Mm.391806	NR_027829		Gm10638	ENSMUSG00000074178	predicted gene 10638	ncRNA	0.160000	0.781095	
mm_1366.1	chr1	66413400	66413600	+	1	NA	NA	NA	-54947	NM_175510	329178	Mm.44798	NM_175510	ENSMUSG00000055567	Unc80	C030018G13Rik|C230061B10Rik|UNC-80	unc-80, NALCN activator	protein-coding	0.010000	0.437811	
mm_47562.1	chr5	124425827	124426027	-	1	NA	NA	NA	-13	NM_001081203	243272	Mm.23879	NM_001081203	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch homolog 1 (Drosophila)	protein-coding	0.110000	0.681592	
mm_8274.1	chr1	139699062	139699262	-	1	NA	NA	NA	82077	NM_001029977	214403	Mm.337613	NM_001029977	ENSMUSG00000070594	Gm4788	Cfhrc|EG214403	predicted gene 4788	protein-coding	0.010000	0.258706	
mm_17487.1	chr2	28582916	28583116	-	1	NA	NA	NA	263	NM_148928	70239	Mm.274120	NM_148928	ENSMUSG00000026816	Gtf3c5	2700084A09Rik|TFIIIC63|TFiiiC2-63	general transcription factor IIIC, polypeptide 5	protein-coding	0.100000	0.626866	
mm_46333.1	chr5	101665103	101665303	-	1	NA	NA	NA	-492	NM_144955	18096	Mm.193072	NM_144955	ENSMUSG00000035187	Nkx6-1	NKX6A|Nkx6.1	NK6 homeobox 1	protein-coding	0.035000	0.567164	
mm_110944.1	chr12	76612590	76612790	-	1	NA	NA	NA	-64765	NR_046044	100504549	Mm.440349	NR_046044		AI463170	-	expressed sequence AI463170	ncRNA	0.045000	0.582090	
mm_110261.1	chr12	31713766	31713966	-	1	NA	NA	NA	60	NM_175191	73010	Mm.441517	NM_175191	ENSMUSG00000044067	Gpr22	2900068K05Rik|AW061316	G protein-coupled receptor 22	protein-coding	0.015000	0.492537	
mm_122909.1	chr14	54953851	54954051	-	1	NA	NA	NA	-4809	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.010000	0.517413	
mm_7067.1	chr1	87650562	87650762	-	1	NA	NA	NA	30350	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.015000	0.532338	
mm_165209.1	chr2	34963065	34963265	+	1	NA	NA	NA	-1393	NM_001326601	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.020000	0.457711	
mm_137156.1	chr17	23726385	23726585	+	1	NA	NA	NA	149	NM_023058	268930	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	0.120000	0.746269	
mm_131849.1	chr16	23060330	23060530	+	1	NA	NA	NA	2130	NM_001102412	16644	Mm.2160	NM_023125	ENSMUSG00000022875	Kng1	Kng	kininogen 1	protein-coding	0.015000	0.537313	73(CTCTTTATAGGA,+,0.00),73(CTCTTTATAGGA,-,0.00)
mm_61579.1	chr7	79842393	79842593	+	1	NA	NA	NA	-141	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.015000	0.601990	
mm_165377.1	chr2	128428825	128429025	-	1	NA	NA	NA	426	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.015000	0.547264	
mm_99254.1	chr11	101123352	101123552	+	1	NA	NA	NA	3321	NM_134024	103733	Mm.479145	NM_134024	ENSMUSG00000035198	Tubg1	1500010O08Rik|AI451582|AI503389|Tubg	tubulin, gamma 1	protein-coding	0.020000	0.482587	
mm_39572.1	chr5	23433386	23433586	+	1	NA	NA	NA	867	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.080000	0.592040	
mm_36055.1	chr4	57338932	57339132	-	1	NA	NA	NA	25260	NR_038179	73349	Mm.393774	NR_038178		1700042G15Rik	-	RIKEN cDNA 1700042G15 gene	ncRNA	0.040000	0.482587	
mm_142418.1	chr17	45568177	45568377	-	1	NA	NA	NA	4125	NM_028662	73836	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.015000	0.522388	
mm_28225.1	chr3	88453309	88453509	-	1	NA	NA	NA	2352	NM_013658	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.005000	0.547264	
mm_88572.1	chr10	79669788	79669988	+	1	NA	NA	NA	478	NM_148934	110012	Mm.22623	NM_148934	ENSMUSG00000020308	Tpgs1	AV005629|Gm16517|Gtrgeo22|PGs1	tubulin polyglutamylase complex subunit 1	protein-coding	0.115000	0.636816	
mm_42250.1	chr5	113989797	113989997	+	1	NA	NA	NA	3860	NM_198109	231637	Mm.389682	NM_198109	ENSMUSG00000042121	Ssh1	AW551225|Gm1394|Gm1395|SSH-1|SSH-1L	slingshot homolog 1 (Drosophila)	protein-coding	0.020000	0.512438	
mm_130615.1	chr15	99966972	99967172	-	1	NA	NA	NA	-2993	NM_001080948	207214	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	0.005000	0.398010	
mm_27831.1	chr3	79099916	79100116	-	1	NA	NA	NA	44871	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.422886	
mm_114012.1	chr13	52609266	52609466	+	1	NA	NA	NA	12484	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.010000	0.457711	
mm_165386.1	chr2	130768186	130768386	-	1	NA	NA	NA	35815	NR_024097	100043766	Mm.447040	NR_024097		Gm14057	OTTMUSG00000015563	Ppp1r14c pseudogene	pseudo	0.005000	0.378109	
mm_74557.1	chr8	10928357	10928557	-	1	NA	NA	NA	0	NR_030715	665306	Mm.358758	NR_030715	ENSMUSG00000038917	3930402G23Rik	-	RIKEN cDNA 3930402G23 gene	ncRNA	0.030000	0.537313	
mm_104305.1	chr11	90663831	90664031	-	1	NA	NA	NA	23670	NM_028011	71943	Mm.167868	NM_028011	ENSMUSG00000020541	Tom1l1	2310045L10Rik|C80573|Srcasm	target of myb1-like 1 (chicken)	protein-coding	0.000000	0.442786	
mm_173154.1	chrX	33554373	33554573	-	1	NA	NA	NA	22841	NM_001145038	100040732	Mm.465135	NM_001145038	ENSMUSG00000078324	Btbd35f14	Gm2933	BTB domain containing 35, family member 14	protein-coding	0.045000	0.636816	
mm_111274.1	chr12	85339415	85339615	-	1	NA	NA	NA	-153	NM_145138	217718	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.085000	0.611940	
mm_20887.1	chr2	148851089	148851289	-	1	NA	NA	NA	-255	NM_029960	77705	Mm.159975	NM_029960	ENSMUSG00000027446	9230104L09Rik	mCST E2	RIKEN cDNA 9230104L09 gene	protein-coding	0.010000	0.482587	
mm_92462.1	chr10	77924195	77924395	-	1	NA	NA	NA	-21759	NM_145152	237387	Mm.133301	NM_145152	ENSMUSG00000051652	Lrrc3	1300011L04Rik|C21orf102	leucine rich repeat containing 3	protein-coding	0.015000	0.512438	
mm_59760.1	chr7	28829990	28830190	+	1	NA	NA	NA	-3704	NM_010706	16855	Mm.210336	NM_010706	ENSMUSG00000053964	Lgals4	gal-4	lectin, galactose binding, soluble 4	protein-coding	0.020000	0.557214	
mm_29267.1	chr3	107458808	107459008	-	1	NA	NA	NA	-10	NM_145922	99738	Mm.101976	NM_145922	ENSMUSG00000027895	Kcnc4	AI850292|KSHIIIC|Kcr2-4|Kv3.4	potassium voltage gated channel, Shaw-related subfamily, member 4	protein-coding	0.070000	0.641791	
mm_157084.1	chrX	9436047	9436247	-	1	NA	NA	NA	33177	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.467662	
mm_128392.1	chr15	43170745	43170945	-	1	NA	NA	NA	-27	NM_172815	239405	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.035000	0.562189	
mm_147142.1	chr18	36515677	36515877	-	1	NA	NA	NA	28	NM_010415	15200	Mm.289681	NM_010415	ENSMUSG00000024486	Hbegf	AW047313|Dtr|Dts|Hegfl	heparin-binding EGF-like growth factor	protein-coding	0.120000	0.736318	
mm_135677.1	chr16	52419906	52420106	-	1	NA	NA	NA	33075	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.338308	
mm_117194.1	chr13	63573044	63573244	-	1	NA	NA	NA	316	NM_001328514	19206	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes	patched 1	protein-coding	0.080000	0.651741	
mm_12351.1	chr2	69749291	69749491	+	1	NA	NA	NA	26303	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.000000	0.323383	
mm_21442.1	chr2	160327081	160327281	-	1	NA	NA	NA	313	NM_001033411	329554	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.015000	0.577114	
mm_156531.1	chrX	151046886	151047086	+	1	NA	NA	NA	-184	NM_008001	14163	Mm.8142	NM_008001	ENSMUSG00000025265	Fgd1	ZFYVE3	FYVE, RhoGEF and PH domain containing 1	protein-coding	0.105000	0.706468	
mm_28533.1	chr3	92687110	92687310	-	1	NA	NA	NA	0	NM_027137	69611	Mm.176243	NM_027137	ENSMUSG00000103243	Lce1d	2310037L11Rik|AI415320|Sprrl7	late cornified envelope 1D	protein-coding	0.010000	0.532338	-33(CAGTATAAAAGG,-,0.00)
mm_74389.1	chr8	128732769	128732969	+	1	NA	NA	NA	47215	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.000000	0.363184	
mm_99185.1	chr11	100860392	100860592	+	1	NA	NA	NA	8	NM_001164062	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.095000	0.671642	
mm_69193.1	chr7	127286397	127286597	-	1	NA	NA	NA	-9763	NM_001253873	16408	Mm.1618	NM_008400	ENSMUSG00000030830	Itgal	(p180)|Cd11a|LFA-1|LFA-1A|Ly-15|Ly-21	integrin alpha L	protein-coding	0.040000	0.502488	
mm_152598.1	chr19	11640734	11640934	-	1	NA	NA	NA	17	NM_133246	170813	Mm.240438	NM_133246	ENSMUSG00000024681	Ms4a3	HTm4	membrane-spanning 4-domains, subfamily A, member 3	protein-coding	0.005000	0.487562	
mm_80619.1	chr9	88547968	88548168	+	1	NA	NA	NA	48	NM_001163061	71640	Mm.259988	NM_001142943	ENSMUSG00000032425	Zfp949	4930422I07Rik	zinc finger protein 949	protein-coding	0.020000	0.512438	
mm_167740.1	chr9	107338200	107338400	-	1	NA	NA	NA	50	NM_133984	69536	Mm.259467	NM_133984	ENSMUSG00000032579	Hemk1	2310008M14Rik|AW049265	HemK methyltransferase family member 1	protein-coding	0.055000	0.611940	
mm_144408.1	chr18	20961226	20961426	+	1	NA	NA	NA	16701	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.045000	0.512438	
mm_86851.1	chr10	21593087	21593287	+	1	NA	NA	NA	42	NR_027968	67692	Mm.54306	NM_183266	ENSMUSG00000050844	1700020N01Rik	-	RIKEN cDNA 1700020N01 gene	ncRNA	0.065000	0.592040	
mm_16827.1	chr2	11480256	11480456	-	1	NA	NA	NA	21734	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.055000	0.547264	
mm_103246.1	chr11	70812398	70812598	-	1	NA	NA	NA	63	NM_001045526	327957	Mm.164325	NM_001045526	ENSMUSG00000057135	Scimp	A430084P05Rik	SLP adaptor and CSK interacting membrane protein	protein-coding	0.015000	0.547264	
mm_33730.1	chr4	134098702	134098902	+	1	NA	NA	NA	-3729	NM_013706	23833	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	0.025000	0.582090	
mm_4206.1	chr1	171247265	171247465	+	1	NA	NA	NA	-243	NM_153064	226646	Mm.21669	NM_153064	ENSMUSG00000013593	Ndufs2	CI-49kD	NADH dehydrogenase (ubiquinone) Fe-S protein 2	protein-coding	0.070000	0.557214	
mm_111750.1	chr12	103949199	103949399	-	1	NA	NA	NA	7598	NM_009247	20704	Mm.312593	NM_009247	ENSMUSG00000072849	Serpina1e	Dom5|PI5|Spi1-5	serine (or cysteine) peptidase inhibitor, clade A, member 1E	protein-coding	0.035000	0.547264	
mm_74338.1	chr8	127095578	127095778	+	1	NA	NA	NA	31622	NM_001309391	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.030000	0.358209	
mm_153873.1	chr19	46863444	46863644	-	1	NA	NA	NA	98807	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.035000	0.542289	
mm_77669.1	chr8	124862914	124863114	-	1	NA	NA	NA	15	NM_025615	66523	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	0.110000	0.701493	
mm_143107.1	chr17	57105832	57106032	-	1	NA	NA	NA	10	NR_033508	100169874	Mm.76700	NR_033508	ENSMUSG00000079414	Gm11110	ENSMUSG00000079414	predicted gene 11110	ncRNA	0.050000	0.626866	
mm_149652.1	chr19	18670695	18670895	+	1	NA	NA	NA	15	NM_026120	67383	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	0.165000	0.746269	
mm_129155.1	chr15	76232494	76232694	-	1	NA	NA	NA	-1216	NM_011117	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.070000	0.666667	
mm_103964.1	chr11	84442966	84443166	-	1	NA	NA	NA	70435	NM_019816	56321	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0.000000	0.462687	
mm_56377.1	chr6	94251376	94251576	-	1	NA	NA	NA	-14034	NR_130996	78178	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0.010000	0.402985	
mm_29911.1	chr3	131474524	131474724	-	1	NA	NA	NA	-90144	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.020000	0.517413	
mm_68769.1	chr7	121981472	121981672	-	1	NA	NA	NA	121	NM_001033318	233824	Mm.442015	NM_001033318	ENSMUSG00000034951	Cog7	5630400E24Rik|Gm167	component of oligomeric golgi complex 7	protein-coding	0.120000	0.661692	
mm_114658.1	chr13	78118099	78118299	+	1	NA	NA	NA	78250	NM_001347538	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.020000	0.512438	
mm_94151.1	chr10	128743950	128744150	-	1	NA	NA	NA	6	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.105000	0.736318	
mm_19136.1	chr2	80438543	80438743	-	1	NA	NA	NA	8753	NM_011356	20378	Mm.427436	NM_011356	ENSMUSG00000027004	Frzb	Frp|Sfrp3|frezzled|fritz|frzb-1	frizzled-related protein	protein-coding	0.005000	0.442786	
mm_144509.1	chr18	24708525	24708725	+	1	NA	NA	NA	2	NM_001289655	225288	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0.025000	0.547264	
mm_124455.1	chr14	119034533	119034733	-	1	NA	NA	NA	64801	NM_001081252	66435	Mm.213406	NM_025561	ENSMUSG00000042104	Uggt2	1810064L21Rik|3110001A05Rik|3110027P15Rik|A230065J02Rik|AW047562|Ugcgl2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding	0.010000	0.388060	
mm_160459.1	chr8	109608566	109608766	-	1	NA	NA	NA	7	NM_020046	56749	Mm.23894	NM_020046	ENSMUSG00000031730	Dhodh	2810417D19Rik|AI834883	dihydroorotate dehydrogenase	protein-coding	0.080000	0.611940	
mm_90037.1	chr10	115817036	115817236	+	1	NA	NA	NA	-148	NM_001168680	216350	Mm.22270	NM_146010	ENSMUSG00000034127	Tspan8	C76990|E330007O21Rik|Tm4sf3	tetraspanin 8	protein-coding	0.020000	0.537313	
mm_9140.1	chr1	170867695	170867895	-	1	NA	NA	NA	-24	NM_001081304	226641	Mm.377046	NM_001081304	ENSMUSG00000026663	Atf6	9130025P16Rik|9630036G24|AA789574|Atf6alpha|ESTM49	activating transcription factor 6	protein-coding	0.090000	0.601990	
mm_59281.1	chr7	24907525	24907725	+	1	NA	NA	NA	3279	NM_001130152	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.040000	0.636816	
mm_35011.1	chr4	3574668	3574868	-	1	NA	NA	NA	0	NM_028097	72098	Mm.441135	NM_028097	ENSMUSG00000028232	Tmem68	2010300G19Rik|AA408325|AW123402	transmembrane protein 68	protein-coding	0.085000	0.621891	
mm_165807.1	chr3	144720262	144720462	-	1	NA	NA	NA	-27	NM_001282037	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.145000	0.776119	
mm_49708.1	chr6	34412263	34412463	+	1	NA	NA	NA	1	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.010000	0.532338	
mm_28202.1	chr3	88296304	88296504	-	1	NA	NA	NA	434	NM_029801	76927	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	0.030000	0.472637	
mm_43140.1	chr5	125394341	125394541	+	1	NA	NA	NA	-4424	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.035000	0.582090	
mm_116646.1	chr13	49183626	49183826	-	1	NA	NA	NA	-3821	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.010000	0.532338	-38(AAGTTTTAAAGG,-,0.00)
mm_113544.1	chr13	37896463	37896663	+	1	NA	NA	NA	7692	NM_001177869	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.005000	0.427861	
mm_160205.1	chr7	84370843	84371043	-	1	NA	NA	NA	39095	NM_007488	11864	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding	0.000000	0.467662	
mm_163316.1	chr12	6748388	6748588	+	1	NA	NA	NA	631842	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA	0.005000	0.407960	
mm_80922.1	chr9	101097799	101097999	+	1	NA	NA	NA	23137	NM_001100451	77853	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	male-specific lethal 2 homolog (Drosophila)	protein-coding	0.005000	0.457711	
mm_79389.1	chr9	54801689	54801889	+	1	NA	NA	NA	37041	NM_013496	12903	Mm.34797	NM_013496	ENSMUSG00000032291	Crabp1	AI326249|CRABP-I|Crabp-1|CrabpI|Rbp-5	cellular retinoic acid binding protein I	protein-coding	0.020000	0.601990	
mm_26893.1	chr3	19162948	19163148	-	1	NA	NA	NA	17	NM_028840	74252	Mm.200383	NM_028840	ENSMUSG00000027599	Armc1	2310016N05Rik|2900046P06Rik|3110009G21Rik|AA409258|AW048872|Arcp|C330014L16Rik	armadillo repeat containing 1	protein-coding	0.080000	0.631841	
mm_10999.1	chr2	26389276	26389476	+	1	NA	NA	NA	28	NM_173180	66865	Mm.250359	NM_173180	ENSMUSG00000026926	Pmpca	1200002L24Rik|4933435E07Rik|Alpha-MPP|P-55	peptidase (mitochondrial processing) alpha	protein-coding	0.160000	0.756219	
mm_110061.1	chr12	21286217	21286417	-	1	NA	NA	NA	20	NM_018813	54451	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	0.080000	0.592040	
mm_88021.1	chr10	67185987	67186187	+	1	NA	NA	NA	337	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.030000	0.472637	
mm_126915.1	chr15	91199358	91199558	+	1	NA	NA	NA	-7651	NM_011994	26874	Mm.295456	NM_011994	ENSMUSG00000055782	Abcd2	ABC39|ALDL1|ALDR|ALDRP	ATP-binding cassette, sub-family D (ALD), member 2	protein-coding	0.075000	0.661692	
mm_9607.1	chr1	175692544	175692744	-	1	NA	NA	NA	-12	NM_010098	13603	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	0.130000	0.736318	
mm_18715.1	chr2	72442805	72443005	-	1	NA	NA	NA	-33314	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.025000	0.497512	
mm_37670.1	chr4	129121175	129121375	-	1	NA	NA	NA	28	NM_010471	15444	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	0.115000	0.771144	
mm_8622.1	chr1	156270571	156270771	-	1	NA	NA	NA	32677	NM_001134741	214575	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	0.025000	0.507463	
mm_102828.1	chr11	69094621	69094821	-	1	NA	NA	NA	-4235	NM_011065	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.040000	0.492537	
mm_114376.1	chr13	63151419	63151619	+	1	NA	NA	NA	-88510	NR_110520	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.020000	0.542289	-98(CCTTTTCTACGG,+,0.00)
mm_34209.1	chr4	140961188	140961388	+	1	NA	NA	NA	17	NM_023374	67680	Mm.246965	NM_023374	ENSMUSG00000009863	Sdhb	0710008N11Rik	succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	protein-coding	0.085000	0.651741	
mm_129796.1	chr15	82884287	82884487	-	1	NA	NA	NA	14074	NR_027799	21378	Mm.417272	NR_027799		Tbrg3	TB-11	transforming growth factor beta regulated gene 3	ncRNA	0.005000	0.373134	
mm_43677.1	chr5	138799524	138799724	+	1	NA	NA	NA	-20456	NM_001195128	384244	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0.005000	0.437811	
mm_101256.1	chr11	20831144	20831344	-	1	NA	NA	NA	-136	NM_173752	216551	Mm.76694	NM_173752	ENSMUSG00000042363	Lgalsl	1110067D22Rik|A530071M23|Grpa|Hspc159|Lgalsla	lectin, galactoside binding-like	protein-coding	0.115000	0.721393	30(GCCTTTAAATGC,+,0.00),30(GCCTTTAAATGC,-,0.00)
mm_11127.1	chr2	28229860	28230060	+	1	NA	NA	NA	24271	NM_019498	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.015000	0.547264	
mm_46277.1	chr5	100039515	100039715	-	1	NA	NA	NA	-379	NM_026421	67870	Mm.11311	NM_026421	ENSMUSG00000029326	Enoph1	2310057D15Rik|BB183658|C81437	enolase-phosphatase 1	protein-coding	0.120000	0.731343	
mm_172887.1	chr9	53690049	53690249	-	1	NA	NA	NA	16083	NM_175562	270160	Mm.290285	NM_175562	ENSMUSG00000055069	Rab39	C230094F14Rik|Rab39a	RAB39, member RAS oncogene family	protein-coding	0.040000	0.542289	
mm_104415.1	chr11	94653832	94654032	-	1	NA	NA	NA	141	NM_053161	94064	Mm.34951	NM_053161	ENSMUSG00000024414	Mrpl27	A630055F16Rik|D11Moh47|D18Ertd643e	mitochondrial ribosomal protein L27	protein-coding	0.060000	0.616915	
mm_4458.1	chr1	172699159	172699359	+	1	NA	NA	NA	1203	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding	0.005000	0.338308	
mm_116669.1	chr13	49207946	49208146	-	1	NA	NA	NA	7980	NM_026738	68480	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.045000	0.592040	
mm_31757.1	chr4	63362929	63363129	+	1	NA	NA	NA	580	NM_011016	18406	Mm.14173	NM_011016	ENSMUSG00000061540	Orm2	Agp1|Orm-2	orosomucoid 2	protein-coding	0.025000	0.492537	
mm_83674.1	chr9	49798818	49799018	-	1	NA	NA	NA	151	NM_001081445	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding	0.070000	0.601990	
mm_119175.1	chr14	32165486	32165686	+	1	NA	NA	NA	0	NM_001284319	27057	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.070000	0.641791	
mm_139435.1	chr17	53584033	53584233	+	1	NA	NA	NA	7	NM_001190846	18519	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.015000	0.492537	
mm_115472.1	chr13	119487987	119488187	+	1	NA	NA	NA	48	NM_001039244	633640	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	0.105000	0.671642	
mm_13872.1	chr2	119872430	119872630	+	1	NA	NA	NA	-24698	NM_001164274	29808	Mm.87532	NM_013720	ENSMUSG00000033943	Mga	AV312082|C130042M01Rik|C80739|D030062C11Rik|Mad5	MAX gene associated	protein-coding	0.070000	0.621891	
mm_136748.1	chr17	8525118	8525318	+	1	NA	NA	NA	-1583	NM_001290707	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.065000	0.646766	
mm_46796.1	chr5	112896278	112896478	-	1	NA	NA	NA	-16	NM_028901	74376	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	0.015000	0.582090	
mm_155042.1	chrX	42150057	42150257	+	1	NA	NA	NA	-544	NM_021465	20843	Mm.290422	NM_021465	ENSMUSG00000025862	Stag2	9230105L23Rik|B230112I07Rik|SA-2|SAP2	stromal antigen 2	protein-coding	0.095000	0.706468	
mm_75118.1	chr8	34689793	34689993	-	1	NA	NA	NA	-49577	NR_040706	330734	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	0.005000	0.512438	
mm_124902.1	chr15	10717481	10717681	+	1	NA	NA	NA	2681	NR_045065	75259	Mm.33928	NR_045063	ENSMUSG00000097058	4930556M19Rik	1700009D01Rik|C130022M03Rik	RIKEN cDNA 4930556M19 gene	ncRNA	0.000000	0.333333	
mm_77143.1	chr8	111537322	111537522	-	1	NA	NA	NA	782	NM_001168621	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.110000	0.701493	
mm_135233.1	chr16	36935857	36936057	-	1	NA	NA	NA	974	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.010000	0.417910	
mm_33917.1	chr4	136479775	136479975	+	1	NA	NA	NA	10114	NM_024452	269593	Mm.485824	NM_024452	ENSMUSG00000001089	Luzp1	2700072H04Rik|AI266952|Luzp|mFLJ00226	leucine zipper protein 1	protein-coding	0.020000	0.388060	39(ATCTTTAAAAAC,-,0.00)
mm_143180.1	chr17	57275379	57275579	-	1	NA	NA	NA	-3621	NM_001163816	22324	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.060000	0.681592	-87(GGGCTTATAGGG,-,0.00),-85(GCTTATAGGGGC,+,0.00)
mm_84547.1	chr9	67428743	67428943	-	1	NA	NA	NA	130860	NM_001081242	70549	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	0.010000	0.477612	
mm_41907.1	chr5	105579472	105579672	+	1	NA	NA	NA	60101	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.065000	0.567164	
mm_136382.1	chr16	92825942	92826142	-	1	NA	NA	NA	32	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.010000	0.487562	
mm_41031.1	chr5	86065699	86065899	+	1	NA	NA	NA	-216	NM_007683	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0.095000	0.611940	
mm_57181.1	chr6	122848509	122848709	-	1	NA	NA	NA	7548	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.000000	0.288557	48(CAATTTTAAAGG,-,0.00)
mm_152460.1	chr19	10880300	10880500	-	1	NA	NA	NA	1343	NM_134142	68539	Mm.251890	NM_134142	ENSMUSG00000034659	Tmem109	1110006I15Rik|AA958958|C77652	transmembrane protein 109	protein-coding	0.005000	0.557214	
mm_93534.1	chr10	115362386	115362586	-	1	NA	NA	NA	-224	NM_133683	67226	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0.115000	0.666667	
mm_168339.1	chr11	119395356	119395556	-	1	NA	NA	NA	4984	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.020000	0.552239	
mm_140802.1	chr17	21967699	21967899	-	1	NA	NA	NA	5240	NM_001025373	74670	Mm.26540	NM_001025373	ENSMUSG00000053347	Zfp943	4930432O21Rik	zinc finger prtoein 943	protein-coding	0.030000	0.502488	
mm_101727.1	chr11	42182830	42183030	-	1	NA	NA	NA	0	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding	0.035000	0.532338	
mm_12811.1	chr2	80302262	80302462	+	1	NA	NA	NA	9892	NM_177256	320769	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	0.000000	0.398010	
mm_92550.1	chr10	79761396	79761596	-	1	NA	NA	NA	5456	NM_144528	70294	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0.060000	0.716418	
mm_30355.1	chr3	151764042	151764242	-	1	NA	NA	NA	-1251	NM_031367	15061	Mm.219544	NM_031367	ENSMUSG00000039146	Ifi44l	H-28|H28|H28-1|NS1178	interferon-induced protein 44 like	protein-coding	0.000000	0.417910	
mm_95495.1	chr11	51755843	51756043	+	1	NA	NA	NA	891	NM_001290785	77371	Mm.33878	NM_175255	ENSMUSG00000036391	Sec24a	-	Sec24 related gene family, member A (S. cerevisiae)	protein-coding	0.055000	0.572139	
mm_62008.1	chr7	91262270	91262470	+	1	NA	NA	NA	171584	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.035000	0.537313	
mm_3573.1	chr1	150518640	150518840	+	1	NA	NA	NA	-52575	NM_001110146	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.000000	0.298507	
mm_4642.1	chr1	179975837	179976037	+	1	NA	NA	NA	14848	NM_001033285	226751	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	0.010000	0.492537	
mm_163164.1	chr11	86579004	86579204	+	1	NA	NA	NA	5054	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.035000	0.512438	
mm_141893.1	chr17	34862080	34862280	-	1	NA	NA	NA	334	NM_001142706	14962	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0.005000	0.562189	-71(TTGCATAAAAGG,-,0.00)
mm_8820.1	chr1	162188755	162188955	-	1	NA	NA	NA	-28768	NR_002870	474332	Mm.479755	NR_002870	ENSMUSG00000078190	Dnm3os	6030416H16Rik|Hag2|Npn1|P/L01	dynamin 3, opposite strand	ncRNA	0.005000	0.442786	
mm_151471.1	chr19	58671708	58671908	+	1	NA	NA	NA	1443	NM_026925	69060	Mm.20407	NM_026925	ENSMUSG00000046008	Pnlip	1810007A24Rik|PL|PTL	pancreatic lipase	protein-coding	0.025000	0.497512	
mm_152497.1	chr19	11096805	11097005	-	1	NA	NA	NA	-15802	NM_022430	64381	Mm.34460	NM_022430	ENSMUSG00000024730	Ms4a8a	2010004L09Rik|AI481240|CD20L5|Ms4a8	membrane-spanning 4-domains, subfamily A, member 8A	protein-coding	0.000000	0.383085	
mm_141217.1	chr17	27167695	27167895	-	1	NA	NA	NA	-31	NM_173027	271424	Mm.209679	NM_173027	ENSMUSG00000024210	Ip6k3	D830007E07Rik|Ihpk3	inositol hexaphosphate kinase 3	protein-coding	0.015000	0.626866	
mm_63729.1	chr7	130865865	130866065	+	1	NA	NA	NA	55	NM_133942	101476	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.135000	0.751244	
mm_107049.1	chr12	16170372	16170572	+	1	NA	NA	NA	-353687	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.010000	0.462687	
mm_87993.1	chr10	66698114	66698314	+	1	NA	NA	NA	222170	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.050000	0.562189	
mm_99770.1	chr11	107025493	107025693	+	1	NA	NA	NA	-2630	NM_001163473	69066	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	OTTMUSG00000003581	RIKEN cDNA 1810010H24 gene	protein-coding	0.035000	0.572139	
mm_138882.1	chr17	43389367	43389567	+	1	NA	NA	NA	1	NM_001081178	224792	Mm.23478	NM_001081178	ENSMUSG00000056492	Adgrf5	8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758	adhesion G protein-coupled receptor F5	protein-coding	0.030000	0.532338	-98(CTCCATAAGAGG,-,0.00)
mm_157068.1	chrX	8192800	8193000	-	1	NA	NA	NA	612	NM_007898	13595	Mm.27183	NM_007898	ENSMUSG00000031168	Ebp	AI255399|Pabp|SI|Td|mSI	phenylalkylamine Ca2+ antagonist (emopamil) binding protein	protein-coding	0.070000	0.616915	
mm_161060.1	chr12	70290440	70290640	-	1	NA	NA	NA	-17965	NR_037248	100526482		NR_037248	ENSMUSG00000078026	Mir466o	Mir4660|mmu-mir-466o	microRNA 466o	ncRNA	0.000000	0.383085	
mm_129989.1	chr15	86150468	86150668	-	1	NA	NA	NA	35573	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.005000	0.328358	
mm_453.1	chr1	36105617	36105817	+	1	NA	NA	NA	37317	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.025000	0.522388	
mm_70645.1	chr8	14136054	14136254	+	1	NA	NA	NA	40279	NM_172910	244310	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	discs, large (Drosophila) homolog-associated protein 2	protein-coding	0.030000	0.437811	
mm_136199.1	chr16	89733082	89733282	-	1	NA	NA	NA	85170	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.005000	0.462687	
mm_140357.1	chr17	86831358	86831558	+	1	NA	NA	NA	77594	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.005000	0.437811	
mm_171999.1	chr6	106151356	106151556	-	1	NA	NA	NA	32691	NM_001109751	269784	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding	0.005000	0.373134	-83(GCTCTAAAAGTC,+,0.00)
mm_93620.1	chr10	117277678	117277878	-	1	NA	NA	NA	4494	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.010000	0.477612	
mm_125763.1	chr15	74516112	74516312	+	1	NA	NA	NA	16	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0.065000	0.621891	-34(AGCTCTATAAAG,-,0.00),-32(CTCTATAAAGCC,+,0.00)
mm_112196.1	chr12	113425671	113425871	-	1	NA	NA	NA	-63794	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.457711	-33(GGCTCTAAAAAG,-,0.00)
mm_23814.1	chr3	79886829	79887029	+	1	NA	NA	NA	999	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.030000	0.572139	
mm_99756.1	chr11	106751168	106751368	+	1	NA	NA	NA	42	NM_001033435	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.025000	0.472637	
mm_67699.1	chr7	89518445	89518645	-	1	NA	NA	NA	-959	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.005000	0.547264	
mm_140565.1	chr17	8299634	8299834	-	1	NA	NA	NA	-11369	NM_134114	106489	Mm.311080	NM_134114	ENSMUSG00000073468	Sft2d1	5630401J11Rik|AA409698	SFT2 domain containing 1	protein-coding	0.000000	0.537313	
mm_6289.1	chr1	69759557	69759757	-	1	NA	NA	NA	-67313	NM_029160	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	0.040000	0.477612	
mm_168617.1	chr1	177756109	177756309	-	1	NA	NA	NA	26395	NM_027077	69428	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.010000	0.507463	
mm_41408.1	chr5	90787332	90787532	+	1	NA	NA	NA	1331	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.025000	0.527363	
mm_28312.1	chr3	89245718	89245918	-	1	NA	NA	NA	79	NM_183037	360213	Mm.331156	NM_183037	ENSMUSG00000042766	Trim46	TRIFIC	tripartite motif-containing 46	protein-coding	0.045000	0.641791	
mm_87401.1	chr10	45577822	45578022	+	1	NA	NA	NA	93	NM_172473	209462	Mm.458633	NM_172473	ENSMUSG00000038822	Hace1	1700042J16Rik|A730034A22Rik|BC025474	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	protein-coding	0.135000	0.741294	
mm_138346.1	chr17	34931237	34931437	+	1	NA	NA	NA	84	NM_010893	18010	Mm.8856	NM_010893	ENSMUSG00000007038	Neu1	AA407268|AA407316|Aglp|Apl|Bat-7|Bat7|G9|Map-2|Neu|Neu-1	neuraminidase 1	protein-coding	0.085000	0.681592	-4(CGCTTTTAAAGG,-,0.00),-3(GCTTTTAAAGGG,+,0.00),-3(GCTTTTAAAGGG,-,0.00),-2(CTTTTAAAGGGC,+,0.00)
mm_171595.1	chr4	147702481	147702681	-	1	NA	NA	NA	50	NM_001127188	100503584	Mm.276881	NM_001127188	ENSMUSG00000062518	Zfp534	Gm13159|OTTMUSG00000010681	zinc finger protein 534	protein-coding	0.015000	0.512438	
mm_120352.1	chr14	63992334	63992534	+	1	NA	NA	NA	3	NM_146246	271209	Mm.300655	NM_146246	ENSMUSG00000046049	Rp1l1	BC031365|BE983540|Dcdc4|Rp1hl1	retinitis pigmentosa 1 homolog like 1	protein-coding	0.015000	0.532338	
mm_114979.1	chr13	97250621	97250821	+	1	NA	NA	NA	9616	NM_007930	13803	Mm.241073	NM_007930	ENSMUSG00000041773	Enc1	Nrpb|PIG10	ectodermal-neural cortex 1	protein-coding	0.020000	0.437811	
mm_145466.1	chr18	60271394	60271594	+	1	NA	NA	NA	1773	NM_001034859	225594	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	0.000000	0.462687	
mm_8614.1	chr1	156036053	156036253	-	1	NA	NA	NA	117	NM_001160182	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.110000	0.656716	
mm_4350.1	chr1	171896493	171896693	+	1	NA	NA	NA	-20869	NM_001347187	30925	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	0.000000	0.427861	
mm_41882.1	chr5	105409257	105409457	+	1	NA	NA	NA	-6418	NM_001033550	433926	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0.005000	0.527363	
mm_110206.1	chr12	27341591	27341791	-	1	NA	NA	NA	1027	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.145000	0.726368	
mm_171671.1	chr4	48686686	48686886	-	1	NA	NA	NA	23272	NM_026509	68016	Mm.133444	NM_026509	ENSMUSG00000028348	Murc	2310039E09Rik	muscle-related coiled-coil protein	protein-coding	0.030000	0.472637	-27(CTTTAAATACCC,+,0.00)
mm_86204.1	chr9	119982892	119983092	-	1	NA	NA	NA	1666	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.060000	0.582090	
mm_121118.1	chr14	101840360	101840560	+	1	NA	NA	NA	-163	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.025000	0.457711	
mm_11707.1	chr2	36216668	36216868	+	1	NA	NA	NA	-13658	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.000000	0.582090	
mm_5591.1	chr1	39555557	39555757	-	1	NA	NA	NA	-6817	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.010000	0.497512	
mm_52288.1	chr6	108663031	108663231	+	1	NA	NA	NA	-2197	NR_104577	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.005000	0.417910	
mm_162560.1	chr1	172206658	172206858	-	1	NA	NA	NA	46	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.075000	0.736318	
mm_107077.1	chr12	16965039	16965239	+	1	NA	NA	NA	34979	NM_172574	217430	Mm.379451	NM_172574	ENSMUSG00000045679	Pqlc3	C78076|E030024M05Rik	PQ loop repeat containing	protein-coding	0.015000	0.412935	-100(GTCTTTAAAGCA,+,0.00)
mm_154625.1	chrX	7728440	7728640	+	1	NA	NA	NA	-31	NM_138602	54637	Mm.28850	NM_138602	ENSMUSG00000031149	Praf2	AA986329|C78013|DXImx39e|JM4|Sfc20	PRA1 domain family 2	protein-coding	0.075000	0.601990	
mm_88065.1	chr10	67647341	67647541	+	1	NA	NA	NA	-98486	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.010000	0.482587	
mm_72084.1	chr8	71579135	71579335	+	1	NA	NA	NA	10308	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.000000	0.437811	-36(GGCCATTTAGGG,-,0.00),-34(CCATTTAGGGAC,+,0.00),75(AGCCATTAAAGG,-,0.00),77(CCATTAAAGGAC,+,0.00)
mm_96967.1	chr11	70647556	70647756	+	1	NA	NA	NA	369	NM_027445	70510	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0.030000	0.482587	
mm_59202.1	chr7	24507110	24507310	+	1	NA	NA	NA	123	NR_110958	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.125000	0.666667	
mm_115269.1	chr13	111580176	111580376	+	1	NA	NA	NA	-90235	NM_001122963	73274	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.040000	0.542289	
mm_22412.1	chr2	181365239	181365439	-	1	NA	NA	NA	65	NM_001165991	76688	Mm.87720	NM_029702	ENSMUSG00000038671	Arfrp1	1500006I01Rik|AI480700	ADP-ribosylation factor related protein 1	protein-coding	0.150000	0.731343	
mm_34160.1	chr4	139484822	139485022	+	1	NA	NA	NA	-45626	NM_183148	212632	Mm.30464	NM_183148	ENSMUSG00000041025	Iffo2	C79267	intermediate filament family orphan 2	protein-coding	0.010000	0.532338	
mm_26543.1	chr3	146150171	146150371	+	1	NA	NA	NA	97	NM_001005846	68279	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.075000	0.656716	
mm_161530.1	chr15	102111077	102111277	+	1	NA	NA	NA	8189	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.045000	0.666667	
mm_112508.1	chr13	8885789	8885989	+	1	NA	NA	NA	283	NM_145360	319554	Mm.29847	NM_145360	ENSMUSG00000058258	Idi1	4832416K17Rik	isopentenyl-diphosphate delta isomerase	protein-coding	0.090000	0.641791	
mm_149160.1	chr19	9017965	9018165	+	1	NA	NA	NA	161	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.020000	0.482587	
mm_69531.1	chr7	135693216	135693416	-	1	NA	NA	NA	23063	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.015000	0.482587	
mm_40066.1	chr5	34196692	34196892	+	1	NA	NA	NA	-9082	NM_010753	17122	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.015000	0.557214	
mm_52089.1	chr6	97830853	97831053	+	1	NA	NA	NA	23895	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.467662	
mm_80290.1	chr9	73065803	73066003	+	1	NA	NA	NA	1755	NM_001301232	11891	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	0.010000	0.412935	
mm_7729.1	chr1	130732520	130732720	-	1	NA	NA	NA	644	NM_177604	212439	Mm.268547	NM_177604	ENSMUSG00000042510	AA986860	E030025M07|Sarg	expressed sequence AA986860	protein-coding	0.000000	0.373134	
mm_161615.1	chr16	50431032	50431232	-	1	NA	NA	NA	1257	NM_027444	70508	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.035000	0.512438	
mm_164191.1	chr15	78611367	78611567	+	1	NA	NA	NA	14420	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.045000	0.597015	
mm_9053.1	chr1	167308498	167308698	-	1	NA	NA	NA	-72	NM_001039483	68944	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	0.135000	0.686567	
mm_119519.1	chr14	47473029	47473229	+	1	NA	NA	NA	568	NM_001146085	78938	Mm.11935	NM_030236	ENSMUSG00000037536	Fbxo34	2900057B08Rik|5830426G16Rik	F-box protein 34	protein-coding	0.085000	0.641791	
mm_35332.1	chr4	26501663	26501863	-	1	NA	NA	NA	-155111	NM_172865	242362	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.015000	0.447761	
mm_116574.1	chr13	47100171	47100371	-	1	NA	NA	NA	5950	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.015000	0.343284	66(CAGTATAAAAAG,-,0.00)
mm_102268.1	chr11	55394593	55394793	-	1	NA	NA	NA	25387	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.010000	0.452736	
mm_88117.1	chr10	69213095	69213295	+	1	NA	NA	NA	1	NM_001252638	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.140000	0.786070	
mm_65244.1	chr7	19824154	19824354	-	1	NA	NA	NA	-1499	NM_033601	12051	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.045000	0.706468	
mm_94566.1	chr11	11686149	11686349	+	1	NA	NA	NA	324	NM_001025597	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.090000	0.661692	
mm_64397.1	chr7	142498741	142498941	+	1	NA	NA	NA	5	NM_001347551	21957	Mm.389992	NM_011620	ENSMUSG00000061723	Tnnt3	fTnT	troponin T3, skeletal, fast	protein-coding	0.010000	0.582090	
mm_168533.1	chr1	161035719	161035919	+	1	NA	NA	NA	653	NR_002840	14455	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	0.000000	0.432836	
mm_21505.1	chr2	163587493	163587693	-	1	NA	NA	NA	-14721	NM_181734	76080	Mm.89828	NM_029512	ENSMUSG00000017679	Ttpal	3110080A02Rik|5830472M02Rik	tocopherol (alpha) transfer protein-like	protein-coding	0.025000	0.547264	
mm_95352.1	chr11	48817080	48817280	+	1	NA	NA	NA	211	NM_145377	211007	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0.115000	0.686567	
mm_69674.1	chr7	139984514	139984714	-	1	NA	NA	NA	2260	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.020000	0.517413	
mm_108785.1	chr12	90737994	90738194	+	1	NA	NA	NA	943	NM_010050	13371	Mm.21389	NM_010050	ENSMUSG00000007682	Dio2	5DII|AI324267|DIOII	deiodinase, iodothyronine, type II	protein-coding	0.040000	0.606965	
mm_49973.1	chr6	40778716	40778916	+	1	NA	NA	NA	108678	NM_139296	194357	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0.010000	0.328358	
mm_157252.1	chrX	19150581	19150781	-	1	NA	NA	NA	-3710	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.015000	0.358209	-22(GTATTTAAAAGG,-,0.00)
mm_61309.1	chr7	67952800	67953000	+	1	NA	NA	NA	643	NM_010513	16001	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.080000	0.532338	
mm_45391.1	chr5	66150833	66151033	-	1	NA	NA	NA	45	NM_001291226	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.105000	0.696517	
mm_62311.1	chr7	100227661	100227861	+	1	NA	NA	NA	154	NM_027629	70974	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0.085000	0.656716	
mm_10120.1	chr2	3732971	3733171	+	1	NA	NA	NA	19613	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.005000	0.368159	
mm_117328.1	chr13	68581979	68582179	-	1	NA	NA	NA	25	NM_001308475	210009	Mm.205514	NM_172480	ENSMUSG00000034617	Mtrr	4732420G08|MSR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding	0.145000	0.706468	
mm_111708.1	chr12	103694920	103695120	-	1	NA	NA	NA	-331	NM_001164742	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding	0.005000	0.487562	82(CTCTCTTAAAGG,-,0.00)
mm_165707.1	chr3	97998321	97998521	-	1	NA	NA	NA	-15117	NM_010928	18129	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.005000	0.477612	-33(CAGTATAAAAGC,-,0.00)
mm_116533.1	chr13	45872207	45872407	-	1	NA	NA	NA	92684	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.015000	0.522388	
mm_80690.1	chr9	91378519	91378719	+	1	NA	NA	NA	9647	NM_009576	22774	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.065000	0.616915	
mm_79306.1	chr9	52047879	52048079	+	1	NA	NA	NA	38	NM_001104617	19684	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	0.150000	0.736318	
mm_82303.1	chr9	7867885	7868085	-	1	NA	NA	NA	5185	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.025000	0.522388	
mm_92509.1	chr10	78412885	78413085	-	1	NA	NA	NA	58	NM_010925	18114	Mm.38344	NM_010925	ENSMUSG00000061032	Rrp1	AL033305|AL033306|AU018604|NNP-1|Nnp1	ribosomal RNA processing 1 homolog (S. cerevisiae)	protein-coding	0.110000	0.646766	
mm_140535.1	chr17	6755997	6756197	-	1	NA	NA	NA	26683	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.010000	0.497512	
mm_151030.1	chr19	47014582	47014782	+	1	NA	NA	NA	-16	NM_146100	226180	Mm.276251	NM_146100	ENSMUSG00000034336	Ina	AV028420|NF-66|NF66	internexin neuronal intermediate filament protein, alpha	protein-coding	0.120000	0.706468	-33(CGCCTTAAAAGC,-,0.00),-32(GCCTTAAAAGCC,+,0.00),-31(CCTTAAAAGCCC,+,0.00)
mm_61709.1	chr7	81221963	81222163	+	1	NA	NA	NA	8259	NM_008803	18584	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.005000	0.353234	
mm_125505.1	chr15	55307760	55307960	+	1	NA	NA	NA	110	NM_181277	12818	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.045000	0.577114	
mm_135170.1	chr16	35932438	35932638	-	1	NA	NA	NA	-5932	NM_030253	80285	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.020000	0.547264	
mm_11612.1	chr2	34564874	34565074	+	1	NA	NA	NA	158123	NM_001290626	227743	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	0.035000	0.442786	
mm_110065.1	chr12	21373471	21373671	-	1	NA	NA	NA	61	NR_102380	11491	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	0.100000	0.666667	
mm_161583.1	chr16	32147913	32148113	-	1	NA	NA	NA	17463	NM_146069	224109	Mm.33498	NM_146069	ENSMUSG00000052384	Nrros	E430025L02Rik|Lrcc33|Lrrc33	negative regulator of reactive oxygen species	protein-coding	0.025000	0.532338	
mm_106418.1	chr11	119186424	119186624	-	1	NA	NA	NA	-32387	NR_105899	102465563		NR_105899	ENSMUSG00000098704	Mir6934	Gm27523|mmu-mir-6934	microRNA 6934	ncRNA	0.010000	0.507463	
mm_171782.1	chr5	110110238	110110438	+	1	NA	NA	NA	246	NM_001163996	675812	Mm.442122	NM_001163996	ENSMUSG00000023284	Zfp605	A830023I12Rik	zinc finger protein 605	protein-coding	0.035000	0.606965	
mm_116183.1	chr13	30973973	30974173	-	1	NA	NA	NA	-26	NM_025588	66482	Mm.293510	NM_025588	ENSMUSG00000021357	Exoc2	2410030I24Rik|AI648199|Sec5|Sec5l1	exocyst complex component 2	protein-coding	0.105000	0.686567	
mm_166130.1	chr4	155352615	155352815	+	1	NA	NA	NA	-6926	NM_001039079	18762	Mm.28561	NM_008860	ENSMUSG00000029053	Prkcz	AI098070|C80388|Pkcz|R74924|aPKCzeta|nPKC-zeta|zetaPKC	protein kinase C, zeta	protein-coding	0.000000	0.502488	
mm_38529.1	chr4	141545781	141545981	-	1	NA	NA	NA	-281	NR_030695	320456	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.070000	0.611940	
mm_48633.1	chr5	145139929	145140129	-	1	NA	NA	NA	60	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.140000	0.701493	
mm_105371.1	chr11	103208466	103208666	-	1	NA	NA	NA	-18	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.010000	0.587065	
mm_34552.1	chr4	149587159	149587359	+	1	NA	NA	NA	791	NM_023051	65945	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0.080000	0.631841	
mm_114644.1	chr13	76817301	76817501	+	1	NA	NA	NA	318067	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0.000000	0.323383	
mm_138200.1	chr17	34293745	34293945	+	1	NA	NA	NA	-6074	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.010000	0.512438	
mm_158378.1	chrX	135598682	135598882	-	1	NA	NA	NA	-4927	NM_130888	170722	Mm.103373	NM_130888	ENSMUSG00000031410	Nxf7	Nx7|Nxf6|nfx-a1|nxf-a|nxf-a2	nuclear RNA export factor 7	protein-coding	0.005000	0.512438	
mm_155012.1	chrX	41401520	41401720	+	1	NA	NA	NA	91	NM_001290451	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding	0.030000	0.547264	
mm_74891.1	chr8	25104575	25104775	-	1	NA	NA	NA	-2864	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.020000	0.462687	
mm_138618.1	chr17	35823428	35823628	+	1	NA	NA	NA	171	NM_008027	14251	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	0.070000	0.666667	
mm_122437.1	chr14	45219240	45219440	-	1	NA	NA	NA	85	NM_172597	70561	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.070000	0.621891	
mm_58743.1	chr7	13277085	13277285	+	1	NA	NA	NA	-128	NM_001199310	16881	Mm.288179	NM_010715	ENSMUSG00000056394	Lig1	AL033288|LigI	ligase I, DNA, ATP-dependent	protein-coding	0.045000	0.611940	
mm_171095.1	chr3	128955018	128955218	-	1	NA	NA	NA	-244760	NM_001286942	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.025000	0.407960	
mm_27730.1	chr3	69044564	69044764	-	1	NA	NA	NA	78	NM_025863	66949	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.180000	0.815920	
mm_132057.1	chr16	29646338	29646538	+	1	NA	NA	NA	67104	NM_001199177	74143	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	0.000000	0.393035	
mm_125841.1	chr15	74958633	74958833	+	1	NA	NA	NA	3627	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.010000	0.587065	31(CCTTTTAGGTCC,+,0.00)
mm_103892.1	chr11	83575072	83575272	-	1	NA	NA	NA	3464	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.000000	0.457711	
mm_120653.1	chr14	70531525	70531725	+	1	NA	NA	NA	804	NM_145219	213469	Mm.41708	NM_145219	ENSMUSG00000033595	Lgi3	AI841179|AW049851	leucine-rich repeat LGI family, member 3	protein-coding	0.005000	0.587065	
mm_96678.1	chr11	69419061	69419261	+	1	NA	NA	NA	-5486	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.050000	0.527363	
mm_163794.1	chr14	14893310	14893510	+	1	NA	NA	NA	72595	NM_001195229	674895	Mm.317563	NM_001034865	ENSMUSG00000042567	Nek10	Gm282	NIMA (never in mitosis gene a)- related kinase 10	protein-coding	0.000000	0.472637	
mm_114073.1	chr13	54382643	54382843	+	1	NA	NA	NA	11394	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.000000	0.457711	
mm_96288.1	chr11	63128901	63129101	+	1	NA	NA	NA	19	NM_001302261	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.010000	0.577114	
mm_37460.1	chr4	123471704	123471904	-	1	NA	NA	NA	-59893	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.015000	0.402985	
mm_172765.1	chr8	92716903	92717103	-	1	NA	NA	NA	42714	NM_001301137	64379	Mm.137247	NM_022428	ENSMUSG00000031738	Irx6	-	Iroquois related homeobox 6 (Drosophila)	protein-coding	0.025000	0.417910	
mm_151216.1	chr19	53660895	53661095	+	1	NA	NA	NA	-16311	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.015000	0.552239	
mm_138922.1	chr17	43667291	43667491	+	1	NA	NA	NA	19	NM_018887	56050	Mm.17991	NM_018887	ENSMUSG00000023963	Cyp39a1	mCYP39A1	cytochrome P450, family 39, subfamily a, polypeptide 1	protein-coding	0.035000	0.447761	
mm_38399.1	chr4	138913849	138914049	-	1	NA	NA	NA	-2	NM_028453	73162	Mm.238081	NM_028453	ENSMUSG00000041161	Otud3	3110030K17Rik	OTU domain containing 3	protein-coding	0.145000	0.786070	
mm_40330.1	chr5	43910627	43910827	+	1	NA	NA	NA	41918	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.005000	0.388060	
mm_20696.1	chr2	132815915	132816115	-	1	NA	NA	NA	39	NM_175113	66926	Mm.34199	NM_175113	ENSMUSG00000037376	Trmt6	3300001M20Rik|AU016412|AW492787|CGI-09|mKIAA1153	tRNA methyltransferase 6	protein-coding	0.100000	0.646766	
mm_141323.1	chr17	28441281	28441481	-	1	NA	NA	NA	44768	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.005000	0.482587	
mm_15055.1	chr2	152911277	152911477	+	1	NA	NA	NA	25	NM_001081044	228785	Mm.250604	NM_001081044	ENSMUSG00000027470	Mylk2	9830004H17Rik|BB138278	myosin, light polypeptide kinase 2, skeletal muscle	protein-coding	0.025000	0.601990	
mm_57411.1	chr6	124865733	124865933	-	1	NA	NA	NA	-1916	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.020000	0.562189	
mm_170165.1	chr17	53689229	53689429	-	1	NA	NA	NA	-14	NM_028232	72415	Mm.153202	NM_028232	ENSMUSG00000023940	Sgol1	3300001M08Rik|C81037|Sgo1	shugoshin-like 1 (S. pombe)	protein-coding	0.135000	0.686567	
mm_103608.1	chr11	78497664	78497864	-	1	NA	NA	NA	-10	NM_172795	237868	Mm.210332	NM_172795	ENSMUSG00000050132	Sarm1	A830091I15Rik|C78606|MyD885|Sarm	sterile alpha and HEAT/Armadillo motif containing 1	protein-coding	0.080000	0.641791	
mm_130627.1	chr15	100415696	100415896	-	1	NA	NA	NA	7259	NM_001146161	18174	Mm.234608	NM_008732	ENSMUSG00000023030	Slc11a2	DCT1|DMT1|Nramp2|mk|van	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2	protein-coding	0.020000	0.447761	-90(CCTTTTATATAC,+,0.00)
mm_138482.1	chr17	35195028	35195228	+	1	NA	NA	NA	156	NR_105939	102465588		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	0.020000	0.557214	
mm_143459.1	chr17	70990622	70990822	-	1	NA	NA	NA	-206	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.100000	0.671642	
mm_143979.1	chr17	87446762	87446962	-	1	NA	NA	NA	73	NM_007589	12314	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017	calmodulin 2	protein-coding	0.105000	0.641791	-37(GTGTTTATGAGG,-,0.00)
mm_126415.1	chr15	80287181	80287381	+	1	NA	NA	NA	43	NM_001044308	239556	Mm.291058	NM_001044308	ENSMUSG00000022416	Cacna1i	Ca(V)3.3	calcium channel, voltage-dependent, alpha 1I subunit	protein-coding	0.150000	0.741294	
mm_31428.1	chr4	48085363	48085563	+	1	NA	NA	NA	34217	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.005000	0.412935	
mm_112287.1	chr12	114469474	114469674	-	1	NA	NA	NA	-108	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.000000	0.388060	-22(ACCCTTAAAAAC,-,0.00),-21(CCCTTAAAAACC,+,0.00),-20(CCTTAAAAACCA,+,0.00)
mm_88940.1	chr10	81317926	81318126	+	1	NA	NA	NA	-3077	NM_027381	70312	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.015000	0.512438	
mm_10676.1	chr2	21367482	21367682	+	1	NA	NA	NA	15	NM_001004761	241263	Mm.166647	NM_175706	ENSMUSG00000045967	Gpr158	5330427M13Rik|mKIAA1136	G protein-coupled receptor 158	protein-coding	0.030000	0.527363	
mm_139773.1	chr17	64753374	64753574	+	1	NA	NA	NA	-13637	NR_105051	101202683	Mm.393309	NR_105051		Dreh	-	down-regulated in hepatocellular carcinoma	ncRNA	0.000000	0.353234	
mm_170911.1	chr2	34650253	34650453	-	1	NA	NA	NA	104879	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.070000	0.517413	-15(TTTTTTAGACGC,+,0.00)
mm_119947.1	chr14	54991173	54991373	+	1	NA	NA	NA	3276	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.025000	0.517413	
mm_100016.1	chr11	114890094	114890294	+	1	NA	NA	NA	153	NM_170758	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.045000	0.552239	
mm_109586.1	chr12	112604158	112604358	+	1	NA	NA	NA	15474	NM_198411	70435	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.010000	0.611940	
mm_13231.1	chr2	97630662	97630862	+	1	NA	NA	NA	163105	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.020000	0.472637	
mm_5715.1	chr1	44079565	44079765	-	1	NA	NA	NA	22723	NM_029368	75623	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0.005000	0.383085	
mm_16962.1	chr2	17460523	17460723	-	1	NA	NA	NA	-102891	NR_105847	102465964		NR_105847	ENSMUSG00000099161	Mir6419	Gm27713|mmu-mir-6419	microRNA 6419	ncRNA	0.005000	0.497512	
mm_37699.1	chr4	129335207	129335407	-	1	NA	NA	NA	63	NM_009030	19646	Mm.12145	NM_009030	ENSMUSG00000057236	Rbbp4	RBAP48|mRbAp48	retinoblastoma binding protein 4	protein-coding	0.120000	0.701493	
mm_116721.1	chr13	51701813	51702013	-	1	NA	NA	NA	50205	NM_029279	75420	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.000000	0.298507	
mm_66351.1	chr7	43527233	43527433	-	1	NA	NA	NA	5838	NM_001111058	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.015000	0.437811	
mm_24647.1	chr3	94386865	94387065	+	1	NA	NA	NA	9533	NR_121656	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.010000	0.512438	-76(CTCCATAAAAGC,-,0.00)
mm_46282.1	chr5	100159188	100159388	-	1	NA	NA	NA	520	NM_182841	231503	Mm.99790	NM_182841	ENSMUSG00000050640	Tmem150c	-	transmembrane protein 150C	protein-coding	0.155000	0.800995	
mm_97927.1	chr11	83640405	83640605	+	1	NA	NA	NA	8873	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.015000	0.447761	
mm_156752.1	chrX	160390607	160390807	+	1	NA	NA	NA	17	NM_001290445	237175	Mm.213016	NM_178712	ENSMUSG00000031298	Adgrg2	AW212196|B830041D06Rik|Gpr64|Me6	adhesion G protein-coupled receptor G2	protein-coding	0.095000	0.696517	
mm_66476.1	chr7	44997470	44997670	-	1	NA	NA	NA	9	NM_029410	75736	Mm.261006	NM_029410	ENSMUSG00000003190	Bcl2l12	2810475P17Rik|5430429M05Rik|Bcl-L12|Bcl2-L12	BCL2-like 12 (proline rich)	protein-coding	0.080000	0.562189	
mm_123441.1	chr14	64949553	64949753	-	1	NA	NA	NA	204	NM_177338	219150	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.045000	0.686567	
mm_100838.1	chr11	5542156	5542356	-	1	NA	NA	NA	-39	NM_134033	104479	Mm.210403	NM_134033	ENSMUSG00000020482	Ccdc117	1110004K02Rik|1700026O03Rik|AU018638|AU042822|AV173073|BC018601	coiled-coil domain containing 117	protein-coding	0.070000	0.621891	
mm_29802.1	chr3	127780291	127780491	-	1	NA	NA	NA	136	NM_027808	71481	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	0.070000	0.562189	
mm_50389.1	chr6	48706203	48706403	+	1	NA	NA	NA	1941	NM_153175	231931	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	0.005000	0.482587	
mm_13302.1	chr2	102550023	102550223	+	1	NA	NA	NA	102	NM_173749	210622	Mm.28649	NM_173749	ENSMUSG00000027188	Pamr1	5930437L24|E430002G05Rik|Ramp	peptidase domain containing associated with muscle regeneration 1	protein-coding	0.055000	0.636816	
mm_113541.1	chr13	37864815	37865015	+	1	NA	NA	NA	-23519	NR_033218	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.000000	0.487562	
mm_152765.1	chr19	20390572	20390772	-	1	NA	NA	NA	-1	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.005000	0.447761	
mm_101761.1	chr11	43598573	43598773	-	1	NA	NA	NA	2889	NM_008375	16204	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0.015000	0.512438	
mm_88153.1	chr10	69551069	69551269	+	1	NA	NA	NA	17461	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.015000	0.487562	
mm_133694.1	chr16	92612768	92612968	+	1	NA	NA	NA	84461	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.025000	0.472637	-24(GCCTCTAAAGGA,-,0.00),-23(CCTCTAAAGGAC,+,0.00)
mm_132599.1	chr16	38522690	38522890	+	1	NA	NA	NA	-127	NM_024273	76916	Mm.132231	NM_024273	ENSMUSG00000002846	Timmdc1	2810021C21Rik|4930455C21Rik|AV135763	translocase of inner mitochondrial membrane domain containing 1	protein-coding	0.090000	0.616915	
mm_101747.1	chr11	43379302	43379502	-	1	NA	NA	NA	-4941	NR_029558	387164		NR_029558	ENSMUSG00000065601	Mir146	Mirn146|miR-146a|mmu-mir-146	microRNA 146	ncRNA	0.025000	0.447761	
mm_103196.1	chr11	70646958	70647158	-	1	NA	NA	NA	-19	NM_024211	67863	Mm.296082	NM_024211	ENSMUSG00000014606	Slc25a11	2310022P18Rik|2oxoc	solute carrier family 25 (mitochondrial carrier oxoglutarate carrier), member 11	protein-coding	0.080000	0.582090	
mm_20264.1	chr2	126675146	126675346	-	1	NA	NA	NA	346	NM_001271469	14391	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.080000	0.611940	
mm_11639.1	chr2	34874347	34874547	+	1	NA	NA	NA	51	NM_030021	77996	Mm.215255	NM_030021	ENSMUSG00000026870	Cutal	D730039F16Rik	cutA divalent cation tolerance homolog-like	protein-coding	0.040000	0.626866	
mm_5963.1	chr1	56972360	56972560	-	1	NA	NA	NA	991	NR_024325	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0.130000	0.711443	
mm_30648.1	chr4	8840241	8840441	+	1	NA	NA	NA	149935	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.010000	0.457711	
mm_166880.1	chr7	25427315	25427515	+	1	NA	NA	NA	-14529	NM_153576	232983	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0.010000	0.457711	
mm_114315.1	chr13	60029526	60029726	+	1	NA	NA	NA	-85	NR_046142	328263	Mm.123405	NR_046142		A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	0.025000	0.447761	
mm_140944.1	chr17	24478959	24479159	-	1	NA	NA	NA	19	NM_001252464	56716	Mm.289516	NM_019988	ENSMUSG00000024142	Mlst8	0610033N12Rik|AA409454|AI505104|AI851821|Gbl	MTOR associated protein, LST8 homolog (S. cerevisiae)	protein-coding	0.075000	0.616915	
mm_140076.1	chr17	75178583	75178783	+	1	NA	NA	NA	-98	NM_001331236	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.030000	0.517413	
mm_26539.1	chr3	146149726	146149926	+	1	NA	NA	NA	-7	NM_026656	68279	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.070000	0.681592	5(CCCTTTATAAGG,+,0.00),5(CCCTTTATAAGG,-,0.00),7(CTTTATAAGGGC,+,0.00)
mm_83202.1	chr9	41579455	41579655	-	1	NA	NA	NA	-1698	NR_015483	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.025000	0.547264	
mm_150689.1	chr19	42120148	42120348	+	1	NA	NA	NA	8745	NM_027106	69534	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0.005000	0.487562	
mm_93535.1	chr10	115362416	115362616	-	1	NA	NA	NA	-254	NM_133683	67226	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0.105000	0.646766	
mm_90528.1	chr10	128085419	128085619	+	1	NA	NA	NA	233	NR_030442	751518		NR_030442	ENSMUSG00000093245	Mir677	Mirn677|mir-677|mmu-mir-677	microRNA 677	ncRNA	0.015000	0.422886	
mm_142714.1	chr17	47924371	47924571	-	1	NA	NA	NA	161	NM_028767	74123	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.140000	0.771144	
mm_88438.1	chr10	77541853	77542053	+	1	NA	NA	NA	11605	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.005000	0.592040	
mm_4107.1	chr1	167598329	167598529	+	1	NA	NA	NA	67	NM_009107	20183	Mm.3475	NM_009107	ENSMUSG00000015843	Rxrg	Nr2b3	retinoid X receptor gamma	protein-coding	0.080000	0.626866	
mm_92717.1	chr10	80798104	80798304	-	1	NA	NA	NA	422	NM_023900	78670	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.125000	0.671642	
mm_144176.1	chr18	6764943	6765143	+	1	NA	NA	NA	-124	NM_181070	19330	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.075000	0.641791	
mm_149564.1	chr19	12795805	12796005	+	1	NA	NA	NA	218	NR_024093	664779	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0.095000	0.701493	
mm_3798.1	chr1	157506667	157506867	+	1	NA	NA	NA	-29	NM_033354	89867	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	0.025000	0.517413	
mm_92493.1	chr10	78307511	78307711	-	1	NA	NA	NA	32596	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.015000	0.517413	-62(TCCTAGAAAAGC,-,0.00)
mm_37748.1	chr4	129618994	129619194	-	1	NA	NA	NA	-1	NM_198026	230767	Mm.441132	NM_198026	ENSMUSG00000040795	Iqcc	BC026978	IQ motif containing C	protein-coding	0.095000	0.616915	
mm_158245.1	chrX	106840477	106840677	-	1	NA	NA	NA	66	NM_199468	213436	Mm.85581	NM_199468	ENSMUSG00000047686	Zcchc5	D430021I08Rik|Gm375|Mar3|Mart3|ZHC5	zinc finger, CCHC domain containing 5	protein-coding	0.020000	0.477612	89(ATCTCTAAATGG,-,0.00)
mm_80512.1	chr9	79792874	79793074	+	1	NA	NA	NA	456	NM_133718	69981	Mm.486324	NM_133718	ENSMUSG00000032328	Tmem30a	2010200I23Rik|AW540225|Cdc50a|D9Wsu20e	transmembrane protein 30A	protein-coding	0.070000	0.621891	
mm_136814.1	chr17	12395527	12395727	+	1	NA	NA	NA	17018	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.025000	0.497512	
mm_133603.1	chr16	91484986	91485186	+	1	NA	NA	NA	-129	NM_010508	15975	Mm.502	NM_010508	ENSMUSG00000022967	Ifnar1	CD118|Ifar|Ifnar|Ifrc|Infar	interferon (alpha and beta) receptor 1	protein-coding	0.080000	0.656716	
mm_100629.1	chr11	121702661	121702861	+	1	NA	NA	NA	334	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.085000	0.716418	
mm_91022.1	chr10	17912347	17912547	-	1	NA	NA	NA	35620	NM_001033432	380629	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.005000	0.358209	
mm_117873.1	chr13	98925519	98925719	-	1	NA	NA	NA	765	NM_178716	238799	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.040000	0.417910	
mm_79509.1	chr9	57503940	57504140	+	1	NA	NA	NA	-62	NM_133982	102614	Mm.274421	NM_133982	ENSMUSG00000062309	Rpp25	AI851155	ribonuclease P/MRP 25 subunit	protein-coding	0.065000	0.641791	
mm_120372.1	chr14	64587266	64587466	+	1	NA	NA	NA	-749	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA	0.065000	0.686567	
mm_120247.1	chr14	62992337	62992537	+	1	NA	NA	NA	-5640	NM_001039125	654465	Mm.424929	NM_001039125	ENSMUSG00000075573	Defb47	Defb41|EG654465	defensin beta 47	protein-coding	0.010000	0.497512	
mm_49347.1	chr6	21986041	21986241	+	1	NA	NA	NA	231	NM_001081351	214642	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.015000	0.398010	
mm_32623.1	chr4	114511391	114511591	+	1	NA	NA	NA	104767	NM_001085549	666048	Mm.331779	NM_001085549	ENSMUSG00000070867	Trabd2b	Gm12824|Hkat|OTTMUSG00000008561	TraB domain containing 2B	protein-coding	0.005000	0.447761	
mm_148600.1	chr19	5286802	5287002	+	1	NA	NA	NA	8553	NM_030109	319322	Mm.196532	NM_030109	ENSMUSG00000024853	Sf3b2	145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150	splicing factor 3b, subunit 2	protein-coding	0.010000	0.512438	
mm_116226.1	chr13	33034540	33034740	-	1	NA	NA	NA	7226	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	0.005000	0.338308	
mm_74195.1	chr8	123805791	123805991	+	1	NA	NA	NA	-105	NM_009003	19341	Mm.9221	NM_009003	ENSMUSG00000019478	Rab4a	AI848268|Rab4	RAB4A, member RAS oncogene family	protein-coding	0.055000	0.696517	
mm_48236.1	chr5	137720746	137720946	-	1	NA	NA	NA	19152	NM_175521	243300	Mm.74750	NM_175521	ENSMUSG00000045348	Nyap1	6430598A04Rik	neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	protein-coding	0.020000	0.557214	
mm_73040.1	chr8	94266732	94266932	+	1	NA	NA	NA	52231	NM_172410	71805	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0.010000	0.452736	
mm_79486.1	chr9	56995465	56995665	+	1	NA	NA	NA	597	NM_019651	56294	Mm.325643	NM_019651	ENSMUSG00000032290	Ptpn9	MEG2	protein tyrosine phosphatase, non-receptor type 9	protein-coding	0.160000	0.781095	
mm_164113.1	chr15	31338621	31338821	-	1	NA	NA	NA	29038	NM_001164441	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.020000	0.512438	
mm_14054.1	chr2	122561367	122561567	+	1	NA	NA	NA	49810	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.015000	0.492537	
mm_26068.1	chr3	135887104	135887304	+	1	NA	NA	NA	-46935	NR_040540	71038	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	0.010000	0.343284	-50(TTCCTTAAAAGG,-,0.00),-48(CCTTAAAAGGTT,+,0.00)
mm_114957.1	chr13	97071203	97071403	+	1	NA	NA	NA	-340	NM_001100458	320557	Mm.458280	NM_001100458	ENSMUSG00000041817	Fam169a	B230112C05Rik|SLAP75	family with sequence similarity 169, member A	protein-coding	0.105000	0.656716	3(GACCTTAAAGGA,-,0.00),81(TCTTTAATACGG,+,0.00)
mm_140187.1	chr17	83214668	83214868	+	1	NA	NA	NA	-515	NM_134117	106522	Mm.311974	NM_134117	ENSMUSG00000024247	Pkdcc	AI115348|AW548124|Adtk1|ESTM17|MAd1|Sgk493|Vlk|X83346	protein kinase domain containing, cytoplasmic	protein-coding	0.060000	0.686567	
mm_152521.1	chr19	11304269	11304469	-	1	NA	NA	NA	-20556	NM_183190	269063	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	0.000000	0.398010	
mm_7251.1	chr1	93731838	93732038	-	1	NA	NA	NA	-12	NM_001310761	67026	Mm.272356	NM_025920	ENSMUSG00000026279	Thap4	2010320B01Rik	THAP domain containing 4	protein-coding	0.020000	0.432836	-80(TCTTTTATAGTA,+,0.00)
mm_87662.1	chr10	58492980	58493180	+	1	NA	NA	NA	-4857	NM_001162956	76138	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.020000	0.383085	
mm_49725.1	chr6	34682856	34683056	+	1	NA	NA	NA	-26488	NM_145575	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.005000	0.457711	-11(GCTTTAAGACCA,+,0.00)
mm_128934.1	chr15	74636692	74636892	-	1	NA	NA	NA	-474	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.010000	0.512438	
mm_103033.1	chr11	69735389	69735589	-	1	NA	NA	NA	23144	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.015000	0.557214	
mm_139174.1	chr17	47588772	47588972	+	1	NA	NA	NA	-4595	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.010000	0.482587	-16(TCCTATTTAGGG,-,0.00)
mm_33727.1	chr4	134093518	134093718	+	1	NA	NA	NA	1455	NM_013706	23833	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	0.040000	0.557214	
mm_46195.1	chr5	98030522	98030722	-	1	NA	NA	NA	340	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.075000	0.701493	
mm_80936.1	chr9	102694252	102694452	+	1	NA	NA	NA	-23452	NM_019764	56332	Mm.21145	NM_019764	ENSMUSG00000032531	Amotl2	AW549739|C79691|Lccp|MASCOT|mKIAA0989	angiomotin-like 2	protein-coding	0.030000	0.492537	
mm_95151.1	chr11	35769369	35769569	+	1	NA	NA	NA	-26	NM_145962	211347	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0.065000	0.631841	
mm_96159.1	chr11	61486992	61487192	+	1	NA	NA	NA	1648	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.020000	0.592040	
mm_99715.1	chr11	106256081	106256281	+	1	NA	NA	NA	-4	NM_008950	19184	Mm.272361	NM_008950	ENSMUSG00000020708	Psmc5	mSUG1	protease (prosome, macropain) 26S subunit, ATPase 5	protein-coding	0.080000	0.621891	
mm_165407.1	chr2	143282676	143282876	+	1	NA	NA	NA	204284	NM_020595	57329	Mm.157751	NM_020595	ENSMUSG00000027416	Otor	CDRAP|Fdp|MIA|MIAL	otoraplin	protein-coding	0.000000	0.417910	
mm_146950.1	chr18	32559730	32559930	-	1	NA	NA	NA	204	NM_001347610	71683	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	0.085000	0.671642	
mm_119813.1	chr14	54223624	54223824	+	1	NA	NA	NA	30205	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.587065	
mm_3793.1	chr1	157412582	157412782	+	1	NA	NA	NA	-87	NM_177644	226525	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	0.100000	0.626866	
mm_49242.1	chr6	17307162	17307362	+	1	NA	NA	NA	-378	NM_001243064	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.005000	0.532338	59(GGGTTTTAAAAG,-,0.00),60(GGTTTTAAAAGG,-,0.00),61(GTTTTAAAAGGG,+,0.00)
mm_36028.1	chr4	57119925	57120125	-	1	NA	NA	NA	23131	NM_019427	54357	Mm.28217	NM_019427	ENSMUSG00000028434	Epb41l4b	6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2	erythrocyte membrane protein band 4.1 like 4b	protein-coding	0.030000	0.507463	
mm_171697.1	chr4	70249284	70249484	-	1	NA	NA	NA	161051	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.100000	0.606965	
mm_148421.1	chr19	3936588	3936788	+	1	NA	NA	NA	1502	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.000000	0.532338	
mm_83882.1	chr9	55292041	55292241	-	1	NA	NA	NA	-8516	NM_032002	83961	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.015000	0.547264	
mm_41396.1	chr5	90772401	90772601	+	1	NA	NA	NA	66	NM_019932	56744	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	0.025000	0.532338	
mm_142023.1	chr17	35205094	35205294	-	1	NA	NA	NA	157	NM_010735	16992	Mm.87787	NM_010735	ENSMUSG00000024402	Lta	LT|LT-[a]|LT-alpha|LT[a]|LTalpha|Ltx|TNF-beta|TNFSF1|Tnfb|Tnfsf1b|Tnlg1e|hlb382	lymphotoxin A	protein-coding	0.040000	0.641791	-13(TCCTCTATAAAG,-,0.00),-11(CTCTATAAAGGG,+,0.00),-11(CTCTATAAAGGG,-,0.00)
mm_132977.1	chr16	52060444	52060644	+	1	NA	NA	NA	28995	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.025000	0.432836	
mm_87263.1	chr10	41519895	41520095	+	1	NA	NA	NA	495	NM_016898	53599	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.080000	0.601990	
mm_127364.1	chr15	100695682	100695882	+	1	NA	NA	NA	-7862	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.010000	0.547264	
mm_139939.1	chr17	71179088	71179288	+	1	NA	NA	NA	-4790	NM_022882	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.020000	0.497512	
mm_29722.1	chr3	125938390	125938590	-	1	NA	NA	NA	60	NM_011674	22239	Mm.306021	NM_011674	ENSMUSG00000032854	Ugt8a	AI850488|AW455908|Cgt|Ugt8|mCerGT	UDP galactosyltransferase 8A	protein-coding	0.150000	0.756219	
mm_160993.1	chr11	109303899	109304099	-	1	NA	NA	NA	-5818	NM_011268	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0.010000	0.462687	
mm_91902.1	chr10	60214406	60214606	-	1	NA	NA	NA	4754	NM_016803	53374	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	0.000000	0.497512	
mm_155973.1	chrX	106125491	106125691	+	1	NA	NA	NA	-17684	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.015000	0.318408	
mm_65909.1	chr7	30193917	30194117	-	1	NA	NA	NA	1031	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.080000	0.671642	
mm_52922.1	chr6	122875249	122875449	+	1	NA	NA	NA	792	NM_026267	67602	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0.005000	0.388060	
mm_130174.1	chr15	93336726	93336926	-	1	NA	NA	NA	109	NR_028315	67057	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0.200000	0.835821	
mm_126348.1	chr15	79907306	79907506	+	1	NA	NA	NA	12383	NM_001347041	80287	Mm.284059	NM_030255	ENSMUSG00000009585	Apobec3	Apobec|Arp3|BC003314|Cem15|Rfv3	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 3	protein-coding	0.005000	0.452736	
mm_102324.1	chr11	57649382	57649582	-	1	NA	NA	NA	4040	NM_134189	171212	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	0.010000	0.542289	
mm_139623.1	chr17	57362669	57362869	+	1	NA	NA	NA	4083	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.393035	
mm_40826.1	chr5	72875782	72875982	+	1	NA	NA	NA	-7434	NM_001113460	21682	Mm.319581	NM_013689	ENSMUSG00000029217	Tec	-	tec protein tyrosine kinase	protein-coding	0.010000	0.502488	
mm_64935.1	chr7	16295373	16295573	-	1	NA	NA	NA	-8678	NM_001136471	243846	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0.075000	0.661692	
mm_159113.1	chr2	55436589	55436789	+	1	NA	NA	NA	719	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.015000	0.567164	
mm_2924.1	chr1	132143280	132143480	+	1	NA	NA	NA	-3695	NM_008795	18557	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.010000	0.492537	-33(TTCCTTTAAAGC,-,0.00),-32(TCCTTTAAAGCT,+,0.00),-31(CCTTTAAAGCTC,+,0.00)
mm_157708.1	chrX	64275851	64276051	-	1	NA	NA	NA	1045	NM_178740	245446	Mm.101707	NM_178740	ENSMUSG00000046699	Slitrk4	6430513G13|D930039I09Rik	SLIT and NTRK-like family, member 4	protein-coding	0.085000	0.671642	
mm_57107.1	chr6	122592769	122592969	-	1	NA	NA	NA	9575	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.010000	0.497512	
mm_45518.1	chr5	72556200	72556400	-	1	NA	NA	NA	3345	NM_133921	100978	Mm.187453	NM_133921	ENSMUSG00000072889	Nfxl1	1700012H24Rik|AW538212|D430033A06Rik|DNABF|GCF|Gm1058|TCF9	nuclear transcription factor, X-box binding-like 1	protein-coding	0.010000	0.432836	
mm_17794.1	chr2	33130373	33130573	-	1	NA	NA	NA	-43269	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.105000	0.751244	
mm_138832.1	chr17	39848123	39848323	+	1	NA	NA	NA	5226	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.110000	0.611940	
mm_59954.1	chr7	30427018	30427218	+	1	NA	NA	NA	3814	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.030000	0.572139	
mm_131222.1	chr16	8944800	8945000	+	1	NA	NA	NA	114800	NM_001081400	69053	Mm.390868	NM_001081400	ENSMUSG00000022507	1810013L24Rik	1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903	RIKEN cDNA 1810013L24 gene	protein-coding	0.000000	0.507463	
mm_90669.1	chr10	128861350	128861550	+	1	NA	NA	NA	30268	NM_010272	14561	Mm.299218	NM_010272	ENSMUSG00000025352	Gdf11	BMP-11|Bmp11	growth differentiation factor 11	protein-coding	0.000000	0.442786	-71(CTTTTAATAGAA,+,0.00)
mm_46120.1	chr5	92435103	92435303	-	1	NA	NA	NA	-4	NM_183392	269113	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.100000	0.631841	
mm_168747.1	chr12	115567509	115567709	-	1	NA	NA	NA	128185	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.005000	0.482587	77(CTTCTTAAGGGC,+,0.00)
mm_88176.1	chr10	69924044	69924244	+	1	NA	NA	NA	-1388	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.015000	0.512438	
mm_153113.1	chr19	32980195	32980395	-	1	NA	NA	NA	222718	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.010000	0.507463	
mm_40029.1	chr5	33427709	33427909	+	1	NA	NA	NA	6281	NM_011320	672284		NM_011320	ENSMUSG00000029112	Nkx1-1	Nkx-1.1|Sax2	NK1 transcription factor related, locus 1 (Drosophila)	protein-coding	0.005000	0.487562	
mm_42898.1	chr5	122422368	122422568	+	1	NA	NA	NA	24	NM_019805	56317	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0.115000	0.661692	
mm_122512.1	chr14	47167800	47168000	-	1	NA	NA	NA	21502	NM_008102	14528	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	0.000000	0.432836	
mm_147690.1	chr18	60733394	60733594	-	1	NA	NA	NA	-20105	NM_008306	15531	Mm.181862	NM_008306	ENSMUSG00000054008	Ndst1	1200015G06Rik|HSNST|HSNST 1|Hsst|N-HSST|N-HSST 1|NDST-1|b2b2230Clo	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1	protein-coding	0.005000	0.572139	
mm_93948.1	chr10	127243346	127243546	-	1	NA	NA	NA	19917	NM_008447	16572	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	0.055000	0.522388	-68(CTCTAGAAAAGC,-,0.00)
mm_102074.1	chr11	52264695	52264895	-	1	NA	NA	NA	17800	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.000000	0.527363	
mm_103881.1	chr11	83530419	83530619	-	1	NA	NA	NA	-1	NM_013653	20304	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.010000	0.592040	-34(CCCTATAAAAGG,-,0.00)
mm_79303.1	chr9	51962811	51963011	+	1	NA	NA	NA	691	NM_007996	14148	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	0.020000	0.487562	60(TCCTATAAGGGC,+,0.00)
mm_153569.1	chr19	42612674	42612874	-	1	NA	NA	NA	32	NM_001164311	67573	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	0.090000	0.736318	
mm_58549.1	chr7	4690642	4690842	+	1	NA	NA	NA	-186	NM_001003920	381979	Mm.297064	NM_001003920	ENSMUSG00000035390	Brsk1	Gm1100|SAD-B|SADB	BR serine/threonine kinase 1	protein-coding	0.075000	0.756219	
mm_89778.1	chr10	100592296	100592496	+	1	NA	NA	NA	10	NM_001081246	66605	Mm.72646	NM_001081246	ENSMUSG00000056912	1700017N19Rik	-	RIKEN cDNA 1700017N19 gene	protein-coding	0.000000	0.333333	
mm_82158.1	chr9	123781181	123781381	+	1	NA	NA	NA	14070	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.000000	0.482587	
mm_169219.1	chr13	6674337	6674537	-	1	NA	NA	NA	-25666	NM_001291071	56421	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.065000	0.651741	
mm_119944.1	chr14	54988227	54988427	+	1	NA	NA	NA	6222	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.015000	0.522388	
mm_114259.1	chr13	56747693	56747893	+	1	NA	NA	NA	44125	NM_001164042	17129	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.010000	0.507463	
mm_51136.1	chr6	68680251	68680451	+	1	NA	NA	NA	646823	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.407960	
mm_61722.1	chr7	81858871	81859071	+	1	NA	NA	NA	-30	NR_111910	107769	Mm.221412	NM_145375	ENSMUSG00000038623	Tm6sf1	AI428514|BC023123|C630016D09Rik	transmembrane 6 superfamily member 1	protein-coding	0.050000	0.626866	
mm_23301.1	chr3	52468462	52468662	+	1	NA	NA	NA	200225	NM_019739	56458	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.015000	0.452736	
mm_49996.1	chr6	41047473	41047673	+	1	NA	NA	NA	-12064	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.467662	
mm_118152.1	chr13	105249597	105249797	-	1	NA	NA	NA	43317	NM_027934	71816	Mm.317015	NM_027934	ENSMUSG00000021720	Rnf180	3110001E11Rik|Rines	ring finger protein 180	protein-coding	0.040000	0.601990	
mm_93624.1	chr10	117277918	117278118	-	1	NA	NA	NA	4254	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.020000	0.512438	
mm_89662.1	chr10	97483334	97483534	+	1	NA	NA	NA	1103	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.010000	0.462687	
mm_88493.1	chr10	77835847	77836047	+	1	NA	NA	NA	0	NM_001024709	544710	Mm.441890	NM_001024709		Krtap10-10	EG544710	keratin associated protein 10-10	protein-coding	0.025000	0.527363	-33(GAGTATAAAGGC,-,0.00)
mm_151227.1	chr19	53717828	53718028	+	1	NA	NA	NA	40622	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.010000	0.422886	
mm_156888.1	chrX	166386486	166386686	+	1	NA	NA	NA	42033	NM_001177960	14758	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	0.000000	0.283582	
mm_114536.1	chr13	73648087	73648287	+	1	NA	NA	NA	21186	NM_009354	21752	Mm.10109	NM_009354	ENSMUSG00000021611	Tert	EST2|TCS1|TP2|TR|TRT	telomerase reverse transcriptase	protein-coding	0.025000	0.636816	
mm_127497.1	chr15	101412325	101412525	+	1	NA	NA	NA	22	NM_033073	110310	Mm.486285	NM_033073	ENSMUSG00000023039	Krt7	D15Wsu77e|K7|Krt2-7	keratin 7	protein-coding	0.075000	0.671642	
mm_35137.1	chr4	11386543	11386743	-	1	NA	NA	NA	135	NM_001347052	207920	Mm.387719	NM_194055	ENSMUSG00000040728	Esrp1	2210008M09Rik|A630065D16|BC031468|Rbm35a	epithelial splicing regulatory protein 1	protein-coding	0.060000	0.671642	
mm_157423.1	chrX	38564437	38564637	-	1	NA	NA	NA	11659	NM_028288	72584	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	0.030000	0.646766	
mm_110309.1	chr12	33147467	33147667	-	1	NA	NA	NA	19	NR_015602	320046	Mm.208337	NR_015602	ENSMUSG00000052125	F730043M19Rik	-	RIKEN cDNA F730043M19 gene	ncRNA	0.125000	0.776119	
mm_65363.1	chr7	25029912	25030112	-	1	NA	NA	NA	-24075	NM_001290469	232975	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.005000	0.348259	
mm_151283.1	chr19	55266523	55266723	+	1	NA	NA	NA	13254	NM_027976	433256	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.000000	0.492537	
mm_132979.1	chr16	52074333	52074533	+	1	NA	NA	NA	42884	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.005000	0.437811	
mm_80376.1	chr9	75408020	75408220	+	1	NA	NA	NA	1239	NM_027418	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.040000	0.487562	8(TCTTTAAAACCG,+,0.00)
mm_111579.1	chr12	101818955	101819155	-	1	NA	NA	NA	64	NM_011812	23876	Mm.288381	NM_011812	ENSMUSG00000021186	Fbln5	A55|DANCE|EVEC	fibulin 5	protein-coding	0.050000	0.572139	
mm_5421.1	chr1	34073762	34073962	-	1	NA	NA	NA	-43497	NR_105861	102466987		NR_105861	ENSMUSG00000105982	Mir6896	mmu-mir-6896	microRNA 6896	ncRNA	0.015000	0.572139	
mm_105165.1	chr11	101770292	101770492	-	1	NA	NA	NA	14918	NM_008815	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.020000	0.552239	
mm_92184.1	chr10	68044061	68044261	-	1	NA	NA	NA	64563	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.010000	0.542289	
mm_141142.1	chr17	26490817	26491017	-	1	NA	NA	NA	17555	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.000000	0.512438	-38(GAGCATAAAAAC,-,0.00)
mm_101618.1	chr11	35841865	35842065	-	1	NA	NA	NA	-7437	NM_025936	104458	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.040000	0.611940	
mm_116701.1	chr13	50443781	50443981	-	1	NA	NA	NA	-23426	NM_001033400	328250	Mm.315205	NM_001033400	ENSMUSG00000071909	Nutm2	Fam22|Gm806	NUT family member 2	protein-coding	0.010000	0.497512	
mm_19768.1	chr2	105670195	105670395	-	1	NA	NA	NA	35	NR_002867	402728	Mm.444553	NR_002867	ENSMUSG00000086029	Pax6os1	4831410G09Rik|Pax6os	paired box 6 opposite strand 1	ncRNA	0.035000	0.542289	
mm_91246.1	chr10	22731200	22731400	-	1	NA	NA	NA	147	NM_011603	237336	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.105000	0.646766	
mm_65336.1	chr7	24978417	24978617	-	1	NA	NA	NA	-5789	NM_010261	14470	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.020000	0.601990	
mm_73623.1	chr8	110522286	110522486	+	1	NA	NA	NA	-20030	NR_105058	100861869	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.035000	0.472637	
mm_171365.1	chr4	117818038	117818238	-	1	NA	NA	NA	-17120	NM_008135	14664	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	0.040000	0.542289	-35(GAGTATAAATAG,-,0.00)
mm_47787.1	chr5	132195023	132195223	-	1	NA	NA	NA	314854	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.010000	0.512438	
mm_36851.1	chr4	106799710	106799910	-	1	NA	NA	NA	21	NM_025590	329910	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0.035000	0.631841	
mm_79100.1	chr9	46243048	46243248	+	1	NA	NA	NA	2304	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.010000	0.601990	
mm_102946.1	chr11	69617492	69617692	-	1	NA	NA	NA	313	NM_011367	20415	Mm.1431	NM_011367	ENSMUSG00000005202	Shbg	ABP	sex hormone binding globulin	protein-coding	0.000000	0.487562	
mm_148135.1	chr18	76015541	76015741	-	1	NA	NA	NA	82830	NR_045365	73009	Mm.443541	NR_045365		2900057B20Rik	-	RIKEN cDNA 2900057B20 gene	ncRNA	0.010000	0.517413	
mm_89003.1	chr10	81620494	81620694	+	1	NA	NA	NA	6728	NM_001163430	50721	Mm.25643	NM_181586	ENSMUSG00000034748	Sirt6	2810449N18Rik|AI043036|Sir2l6	sirtuin 6	protein-coding	0.015000	0.497512	
mm_124027.1	chr14	76693693	76693893	-	1	NA	NA	NA	16225	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.015000	0.288557	
mm_48047.1	chr5	136459885	136460085	-	1	NA	NA	NA	-84182	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	0.005000	0.432836	
mm_165781.1	chr3	130730193	130730393	-	1	NA	NA	NA	36	NM_001199350	619547	Mm.391636	NM_001199350		Rpl34-ps1	EG619547|ENSMUSG00000068396|Gm10239	ribosomal protein L34, pseudogene 1	protein-coding	0.090000	0.631841	
mm_155034.1	chrX	42068621	42068821	+	1	NA	NA	NA	323	NR_125870	11798	Mm.259879	NM_009688	ENSMUSG00000025860	Xiap	1110015C02Rik|Aipa|Api3|Birc4|IAP3|ILP-1|MIHA	X-linked inhibitor of apoptosis	protein-coding	0.050000	0.686567	
mm_68983.1	chr7	126589356	126589556	-	1	NA	NA	NA	-3639	NM_001146311	12752	Mm.268930	NM_009907	ENSMUSG00000030720	Cln3	AI323623	ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)	protein-coding	0.005000	0.562189	
mm_77596.1	chr8	123892205	123892405	-	1	NA	NA	NA	2470	NM_001272041	11459	Mm.214950	NM_009606	ENSMUSG00000031972	Acta1	AA959943|Acta-2|Acts|Actsk-1	actin, alpha 1, skeletal muscle	protein-coding	0.035000	0.557214	
mm_23747.1	chr3	69373652	69373852	+	1	NA	NA	NA	56834	NM_178726	242083	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	0.010000	0.437811	
mm_54972.1	chr6	48738809	48739009	-	1	NA	NA	NA	-138	NM_175860	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.015000	0.422886	-80(GCTTAAAGAGAC,+,0.00)
mm_11736.1	chr2	37551288	37551488	+	1	NA	NA	NA	34762	NM_177383	338346	Mm.445325	NM_177383	ENSMUSG00000053164	Gpr21	C230004C13Rik	G protein-coupled receptor 21	protein-coding	0.010000	0.407960	
mm_65208.1	chr7	19697501	19697701	-	1	NA	NA	NA	797	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.030000	0.577114	
mm_38559.1	chr4	141652293	141652493	-	1	NA	NA	NA	11722	NM_001347237	69582	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	0.050000	0.577114	
mm_45294.1	chr5	65046779	65046979	-	1	NA	NA	NA	-60689	NM_001347355	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.010000	0.552239	-35(CACTATAAAAGG,-,0.00)
mm_101686.1	chr11	40694838	40695038	-	1	NA	NA	NA	265	NM_001199274	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.070000	0.557214	-36(TAATTTAAAAGG,-,0.00)
mm_90218.1	chr10	121033926	121034126	+	1	NA	NA	NA	22	NM_011915	24117	Mm.32831	NM_011915	ENSMUSG00000020218	Wif1	AW107799|WIF-1	Wnt inhibitory factor 1	protein-coding	0.080000	0.681592	
mm_158316.1	chrX	128548349	128548549	-	1	NA	NA	NA	-503075	NR_045441	75274	Mm.108718	NR_045441	ENSMUSG00000086244	4930558G05Rik	-	RIKEN cDNA 4930558G05 gene	ncRNA	0.040000	0.537313	
mm_151907.1	chr19	5799397	5799597	-	1	NA	NA	NA	3175	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.000000	0.298507	84(GTCTTTTAGAGG,-,0.00),85(TCTTTTAGAGGG,+,0.00)
mm_34900.1	chr4	155638417	155638617	+	1	NA	NA	NA	13648	NM_007661	12537	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	0.025000	0.542289	
mm_131549.1	chr16	17894151	17894351	+	1	NA	NA	NA	48	NM_009435	22114	Mm.439725	NM_009435	ENSMUSG00000041566	Tssk1	Stk22a|TSK-1|Tsk1|Tssk|Tssk1b	testis-specific serine kinase 1	protein-coding	0.010000	0.582090	
mm_92894.1	chr10	82958315	82958515	-	1	NA	NA	NA	-27082	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.015000	0.527363	
mm_149390.1	chr19	11386691	11386891	+	1	NA	NA	NA	11303	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.000000	0.318408	
mm_83330.1	chr9	44233893	44234093	-	1	NA	NA	NA	53	NM_007619	12402	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.170000	0.800995	
mm_58344.1	chr6	147243700	147243900	-	1	NA	NA	NA	20213	NM_008970	19227	Mm.28440	NM_008970	ENSMUSG00000048776	Pthlh	PLP|PTH-like|Pthrp	parathyroid hormone-like peptide	protein-coding	0.025000	0.472637	47(CCCTTTCAAGGC,+,0.00)
mm_169787.1	chr16	13109691	13109891	+	1	NA	NA	NA	55	NM_015769	50505	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	0.090000	0.626866	
mm_12907.1	chr2	84839316	84839516	+	1	NA	NA	NA	8	NM_001081349	72401	Mm.22716	NM_024497	ENSMUSG00000027075	Slc43a1	2610016F07Rik|AA986141|Lat3|PB39|Pov1|R00504	solute carrier family 43, member 1	protein-coding	0.075000	0.626866	
mm_36289.1	chr4	63996963	63997163	-	1	NA	NA	NA	49952	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding	0.000000	0.412935	
mm_162687.1	chr10	17947372	17947572	+	1	NA	NA	NA	595	NM_001033432	380629	Mm.276430	NM_001033432	ENSMUSG00000039879	Heca	Gm869|HDC|HDCL	hdc homolog, cell cycle regulator	protein-coding	0.165000	0.771144	
mm_152236.1	chr19	8709663	8709863	-	1	NA	NA	NA	4134	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.010000	0.502488	
mm_165382.1	chr2	129225365	129225565	+	1	NA	NA	NA	6496	NR_045838	329513	Mm.473529	NM_177847	ENSMUSG00000056738	A730036I17Rik	-	RIKEN cDNA A730036I17 gene	ncRNA	0.020000	0.527363	
mm_121428.1	chr14	120326536	120326736	+	1	NA	NA	NA	50967	NM_175341	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding	0.005000	0.497512	
mm_149586.1	chr19	16132660	16132860	+	1	NA	NA	NA	-71	NM_008139	14682	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.130000	0.751244	
mm_65937.1	chr7	30363014	30363214	-	1	NA	NA	NA	-342	NM_175478	233067	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	0.145000	0.805970	-47(GCCTTTAAGCGC,+,0.00),-18(GCGCCTTTAAGC,-,0.00),-16(GCCTTTAAGCGC,+,0.00)
mm_107997.1	chr12	73336664	73336864	+	1	NA	NA	NA	49916	NM_001037717	625098	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0.000000	0.388060	
mm_61865.1	chr7	88430764	88430964	+	1	NA	NA	NA	591	NM_028238	72433	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	0.015000	0.393035	
mm_4906.1	chr1	190059224	190059424	+	1	NA	NA	NA	111356	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding	0.010000	0.482587	
mm_149772.1	chr19	23087790	23087990	+	1	NA	NA	NA	-53336	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.000000	0.467662	
mm_104214.1	chr11	88342810	88343010	-	1	NA	NA	NA	-9863	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	0.010000	0.313433	
mm_131555.1	chr16	18028612	18028812	+	1	NA	NA	NA	-24148	NM_010047	13353	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0.020000	0.532338	
mm_44335.1	chr5	15883701	15883901	-	1	NA	NA	NA	-35	NR_045974	75058	Mm.183467	NR_045974	ENSMUSG00000105185	4930519H02Rik	-	RIKEN cDNA 4930519H02 gene	ncRNA	0.000000	0.452736	31(CCCTATTTATGC,-,0.00)
mm_53430.1	chr6	134045361	134045561	+	1	NA	NA	NA	9761	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.015000	0.472637	
mm_21045.1	chr2	152540009	152540209	-	1	NA	NA	NA	-68	NM_001001444	75400	Mm.45560	NM_001001444	ENSMUSG00000044249	Defb29	0610030I09Rik|BD-29|mBD-29	defensin beta 29	protein-coding	0.020000	0.587065	
mm_134967.1	chr16	31996586	31996786	-	1	NA	NA	NA	6601	NM_177103	320213	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	0.010000	0.417910	-70(TCCTTTAAAAAA,-,0.00)
mm_114689.1	chr13	81754123	81754323	+	1	NA	NA	NA	-29069	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.015000	0.487562	
mm_9370.1	chr1	172206560	172206760	-	1	NA	NA	NA	144	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.080000	0.706468	
mm_107225.1	chr12	26473309	26473509	+	1	NA	NA	NA	4194	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.005000	0.547264	
mm_88839.1	chr10	80857026	80857226	+	1	NA	NA	NA	1851	NM_175195	73218	Mm.3285	NM_175195	ENSMUSG00000035206	Sppl2b	3110056O03Rik|AW550292|PSL1	signal peptide peptidase like 2B	protein-coding	0.015000	0.567164	
mm_40744.1	chr5	66686845	66687045	+	1	NA	NA	NA	-10448	NR_102714	101202684	Mm.381468	NR_102714	ENSMUSG00000087601	Uchl1os	Gm16832|Uchl1as	ubiquitin carboxy-terminal hydrolase L1, opposite strand	ncRNA	0.050000	0.611940	
mm_99147.1	chr11	100545610	100545810	+	1	NA	NA	NA	78	NM_028918	74407	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0.055000	0.577114	
mm_19871.1	chr2	114047502	114047702	-	1	NA	NA	NA	5273	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.005000	0.472637	
mm_167042.1	chr7	80246262	80246462	+	1	NA	NA	NA	-14	NM_177765	269954	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	0.100000	0.651741	
mm_95671.1	chr11	53979947	53980147	+	1	NA	NA	NA	-20	NM_019723	56517	Mm.154284	NM_019723	ENSMUSG00000063652	Slc22a21	Octn3|Slc22a9	solute carrier family 22 (organic cation transporter), member 21	protein-coding	0.110000	0.656716	
mm_150446.1	chr19	38054925	38055125	+	1	NA	NA	NA	0	NM_028293	74107	Mm.9916	NM_028293	ENSMUSG00000024989	Cep55	1200008O12Rik|2700032M20Rik	centrosomal protein 55	protein-coding	0.105000	0.676617	
mm_84136.1	chr9	59036848	59037048	-	1	NA	NA	NA	-507	NM_001042752	18007	Mm.42249	NM_008684	ENSMUSG00000032340	Neo1	2610028H22Rik|AI327052|D930014N22Rik|Igdcc2	neogenin	protein-coding	0.095000	0.666667	38(CCCTATATAGAG,+,0.00),38(CCCTATATAGAG,-,0.00),40(CTATATAGAGGC,+,0.00)
mm_162527.1	chr1	163313611	163313811	-	1	NA	NA	NA	-61	NM_175686	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.010000	0.507463	
mm_131759.1	chr16	22880163	22880363	+	1	NA	NA	NA	-11752	NR_075099	11625	Mm.197554	NM_013465	ENSMUSG00000022868	Ahsg	-	alpha-2-HS-glycoprotein	protein-coding	0.020000	0.547264	
mm_148649.1	chr19	5493458	5493658	+	1	NA	NA	NA	3103	NM_007687	12631	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.015000	0.651741	
mm_122798.1	chr14	54517277	54517477	-	1	NA	NA	NA	93	NM_001313906	27374	Mm.196585	NM_013768	ENSMUSG00000023110	Prmt5	Jbp1|Skb1	protein arginine N-methyltransferase 5	protein-coding	0.090000	0.611940	
mm_154052.1	chr19	55102980	55103180	-	1	NA	NA	NA	-3633	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.010000	0.422886	
mm_132380.1	chr16	34921525	34921725	+	1	NA	NA	NA	17704	NR_040536	76649	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.025000	0.601990	
mm_76175.1	chr8	82392557	82392757	-	1	NA	NA	NA	9929	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.005000	0.407960	
mm_151775.1	chr19	5306993	5307193	-	1	NA	NA	NA	8762	NM_001024717	545276	Mm.447174	NM_001024717	ENSMUSG00000047658	Gal3st3	-	galactose-3-O-sulfotransferase 3	protein-coding	0.115000	0.621891	
mm_85814.1	chr9	110388135	110388335	-	1	NA	NA	NA	19975	NM_001081043	104831	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.025000	0.587065	
mm_122002.1	chr14	26916801	26917001	-	1	NA	NA	NA	22297	NM_080856	142687	Mm.138259	NM_080856	ENSMUSG00000021898	Asb14	Asb-14	ankyrin repeat and SOCS box-containing 14	protein-coding	0.000000	0.363184	
mm_90668.1	chr10	128831182	128831382	+	1	NA	NA	NA	9511	NM_025364	66118	Mm.235562	NM_025364	ENSMUSG00000078427	Sarnp	1110005A23Rik|Cip29	SAP domain containing ribonucleoprotein	protein-coding	0.015000	0.467662	27(TCTTTTATACAT,+,0.00)
mm_17909.1	chr2	35315543	35315743	-	1	NA	NA	NA	21366	NM_013515	13830	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.005000	0.457711	-78(GCTTTTAGAATG,+,0.00)
mm_41897.1	chr5	105519315	105519515	+	1	NA	NA	NA	-56	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.145000	0.791045	
mm_85843.1	chr9	110624254	110624454	-	1	NA	NA	NA	39	NM_026012	67169	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	0.035000	0.631841	
mm_46861.1	chr5	113819190	113819390	-	1	NA	NA	NA	11211	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.030000	0.567164	
mm_46504.1	chr5	105134690	105134890	-	1	NA	NA	NA	4762	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.010000	0.383085	
mm_159801.1	chr5	113357188	113357388	+	1	NA	NA	NA	-6	NM_001012726	503692	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	0.025000	0.701493	
mm_132877.1	chr16	48786468	48786668	+	1	NA	NA	NA	-14612	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.005000	0.422886	
mm_125676.1	chr15	66579084	66579284	+	1	NA	NA	NA	1612	NM_001081409	239510	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	0.005000	0.298507	
mm_98507.1	chr11	94952169	94952369	+	1	NA	NA	NA	-15324	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.005000	0.601990	
mm_172987.1	chrM	13	213	+	1	NA	NA	NA	NA	NA									0.005000	0.338308	
mm_170691.1	chr2	132215218	132215418	-	1	NA	NA	NA	32470	NM_027478	70612	Mm.30116	NM_027478	ENSMUSG00000027341	Tmem230	5730494N06Rik|AA407821	transmembrane protein 230	protein-coding	0.030000	0.492537	
mm_40866.1	chr5	73946284	73946484	+	1	NA	NA	NA	122027	NM_177561	69727	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.010000	0.492537	
mm_160225.1	chr7	101998354	101998554	+	1	NA	NA	NA	19701	NM_010531	16068	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.035000	0.587065	
mm_142971.1	chr17	56133736	56133936	-	1	NA	NA	NA	16	NM_013662	20359	Mm.8029	NM_013662	ENSMUSG00000001227	Sema6b	Sema|Seman|VIb|semaZ	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B	protein-coding	0.015000	0.537313	
mm_122927.1	chr14	54961286	54961486	-	1	NA	NA	NA	5221	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.005000	0.552239	
mm_8466.1	chr1	153332715	153332915	-	1	NA	NA	NA	-29	NM_010683	226519	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	0.110000	0.736318	
mm_117971.1	chr13	100015438	100015638	-	1	NA	NA	NA	101	NM_030026	78038	Mm.137327	NM_030026	ENSMUSG00000021646	Mccc2	4930552N12Rik|MCCB	methylcrotonoyl-Coenzyme A carboxylase 2 (beta)	protein-coding	0.055000	0.661692	
mm_130641.1	chr15	100551885	100552085	-	1	NA	NA	NA	23	NM_033476	21422	Mm.219040	NM_033476	ENSMUSG00000009733	Tfcp2	CP-2|CP2|D230015P20Rik|LBP-1c|LBP-1d|LBP1|LSF|Tcfcp2|UBP-1	transcription factor CP2	protein-coding	0.090000	0.631841	
mm_71327.1	chr8	44956936	44957136	+	1	NA	NA	NA	6828	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.025000	0.477612	
mm_61105.1	chr7	51887888	51888088	+	1	NA	NA	NA	9021	NM_001330607	14453	Mm.207360	NM_008087	ENSMUSG00000030498	Gas2	Gas-2	growth arrest specific 2	protein-coding	0.015000	0.487562	
mm_67011.1	chr7	65370795	65370995	-	1	NA	NA	NA	349	NM_001163574	21872	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.140000	0.731343	
mm_143117.1	chr17	57207492	57207692	-	1	NA	NA	NA	9636	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.005000	0.542289	
mm_92505.1	chr10	78353541	78353741	-	1	NA	NA	NA	-1941	NM_053014	28169	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.005000	0.422886	
mm_11341.1	chr2	30719176	30719376	+	1	NA	NA	NA	-1934	NR_037272	100526499		NR_037272	ENSMUSG00000093091	Mir3089	mir-3089|mmu-mir-3089	microRNA 3089	ncRNA	0.055000	0.621891	
mm_133146.1	chr16	70313901	70314101	+	1	NA	NA	NA	52	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.100000	0.746269	30(CGCTATAAAGGG,-,0.00)
mm_88108.1	chr10	69151196	69151396	+	1	NA	NA	NA	-57256	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.030000	0.552239	
mm_16339.1	chr2	174336653	174336853	+	1	NA	NA	NA	6664	NM_001077510	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.025000	0.447761	-17(CTCTTTAAAAGG,-,0.00),-16(TCTTTAAAAGGG,+,0.00),-15(CTTTAAAAGGGG,+,0.00)
mm_44914.1	chr5	35679377	35679577	-	1	NA	NA	NA	303	NM_001042615	78558	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.085000	0.731343	-12(GCCTTTAAGCGC,+,0.00)
mm_103028.1	chr11	69735218	69735418	-	1	NA	NA	NA	23315	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.015000	0.552239	
mm_151203.1	chr19	53539529	53539729	+	1	NA	NA	NA	10311	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.000000	0.368159	
mm_54981.1	chr6	48741236	48741436	-	1	NA	NA	NA	2289	NM_008376	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.015000	0.472637	
mm_95557.1	chr11	52310937	52311137	+	1	NA	NA	NA	-28023	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.020000	0.547264	
mm_79049.1	chr9	46228866	46229066	+	1	NA	NA	NA	336	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.010000	0.557214	
mm_44558.1	chr5	24602159	24602359	-	1	NA	NA	NA	-257	NM_025891	66993	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.110000	0.696517	
mm_154278.1	chr19	60790545	60790745	-	1	NA	NA	NA	48	NM_010123	13669	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	0.115000	0.686567	
mm_170686.1	chr2	130385248	130385448	-	1	NA	NA	NA	12281	NM_019696	56264	Mm.112701	NM_019696	ENSMUSG00000027408	Cpxm1	AA986902|Cpx-1|Cpx1|Cpxm	carboxypeptidase X 1 (M14 family)	protein-coding	0.040000	0.527363	
mm_110660.1	chr12	59071546	59071746	-	1	NA	NA	NA	4727	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.010000	0.497512	
mm_42753.1	chr5	120812782	120812982	+	1	NA	NA	NA	244	NM_001083925	23961	Mm.233471	NM_001083925	ENSMUSG00000029605	Oas1b	Flv|L1|Mmu-L1|Oas1|Oias-2|Oias2|Wnv	2'-5' oligoadenylate synthetase 1B	protein-coding	0.025000	0.582090	-19(GCCTCTAAAGGG,-,0.00),-18(CCTCTAAAGGGG,+,0.00)
mm_63121.1	chr7	122969753	122969953	+	1	NA	NA	NA	606	NR_045614	73951	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.155000	0.751244	
mm_20353.1	chr2	127831746	127831946	-	1	NA	NA	NA	13	NM_001113179	12235	Mm.2185	NM_009772	ENSMUSG00000027379	Bub1	AL022991|Bub1a|C80208|D2Xrf87	BUB1, mitotic checkpoint serine/threonine kinase	protein-coding	0.125000	0.651741	
mm_91539.1	chr10	39526010	39526210	-	1	NA	NA	NA	-86824	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.005000	0.547264	
mm_57439.1	chr6	124959421	124959621	-	1	NA	NA	NA	5876	NM_012003	26894	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e	COP9 signalosome subunit 7A	protein-coding	0.005000	0.542289	
mm_82238.1	chr9	3258783	3258983	-	1	NA	NA	NA	-59070	NR_027988	114673	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0.020000	0.487562	-36(CCCCAGAAAAGG,-,0.00)
mm_105781.1	chr11	109771413	109771613	-	1	NA	NA	NA	-49257	NM_153782	208659	Mm.208662	NM_153782	ENSMUSG00000020614	Fam20a	AI606893	family with sequence similarity 20, member A	protein-coding	0.005000	0.527363	
mm_87409.1	chr10	45807690	45807890	+	1	NA	NA	NA	86	NR_040624	320363	Mm.123343	NR_040624	ENSMUSG00000110874	D030045P18Rik	-	RIKEN cDNA D030045P18 gene	ncRNA	0.030000	0.492537	
mm_12303.1	chr2	69109781	69109981	+	1	NA	NA	NA	-25919	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.015000	0.472637	
mm_145800.1	chr18	65349961	65350161	+	1	NA	NA	NA	43827	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.035000	0.507463	
mm_72116.1	chr8	71676382	71676582	+	1	NA	NA	NA	99	NM_010589	16453	Mm.249645	NM_010589	ENSMUSG00000031805	Jak3	fae|wil	Janus kinase 3	protein-coding	0.065000	0.676617	
mm_106093.1	chr11	116198561	116198761	-	1	NA	NA	NA	-194	NM_027107	69535	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	0.080000	0.611940	85(CCTCTTATACCG,+,0.00)
mm_156671.1	chrX	159211114	159211314	+	1	NA	NA	NA	-44568	NM_148945	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	0.005000	0.467662	
mm_56454.1	chr6	97863300	97863500	-	1	NA	NA	NA	56342	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.437811	-36(ACCTATATAAAC,-,0.00)
mm_125574.1	chr15	59374155	59374355	+	1	NA	NA	NA	57	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.110000	0.666667	
mm_11898.1	chr2	50066358	50066558	+	1	NA	NA	NA	29	NM_177139	320343	Mm.130607	NM_177139	ENSMUSG00000050447	Lypd6	E130115E03Rik	LY6/PLAUR domain containing 6	protein-coding	0.155000	0.786070	
mm_18813.1	chr2	74544445	74544645	-	1	NA	NA	NA	34403	NM_001110209	69605	Mm.156113	NM_027133	ENSMUSG00000009207	Lnpk	2310011O18Rik|4921514L11Rik|9530051D01Rik|AI666268|Lnp|Lnpk1|Ul|ulnaless	lunapark, ER junction formation factor	protein-coding	0.000000	0.258706	
mm_105734.1	chr11	109289463	109289663	-	1	NA	NA	NA	8618	NM_001165934	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0.015000	0.527363	
mm_66411.1	chr7	44485590	44485790	-	1	NA	NA	NA	1173	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.010000	0.402985	
mm_114899.1	chr13	94462385	94462585	+	1	NA	NA	NA	103525	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.010000	0.363184	
mm_58783.1	chr7	16098534	16098734	+	1	NA	NA	NA	-9	NM_025898	108124	Mm.104540	NM_025898	ENSMUSG00000006024	Napa	1500039N14Rik|AW209189|RA81|SNAPA|SNARE|a-SNAP|hyh	N-ethylmaleimide sensitive fusion protein attachment protein alpha	protein-coding	0.105000	0.691542	
mm_4549.1	chr1	177442229	177442429	+	1	NA	NA	NA	-2332	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.185000	0.845771	
mm_37509.1	chr4	123859439	123859639	-	1	NA	NA	NA	-45474	NM_019660	56309	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	0.010000	0.517413	
mm_166565.1	chr6	48834042	48834242	-	1	NA	NA	NA	6846	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.035000	0.527363	
mm_122990.1	chr14	54989034	54989234	-	1	NA	NA	NA	5415	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.025000	0.557214	
mm_97834.1	chr11	83064692	83064892	+	1	NA	NA	NA	-320	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.000000	0.547264	
mm_146908.1	chr18	31316986	31317186	-	1	NA	NA	NA	42	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding	0.020000	0.492537	
mm_125385.1	chr15	40658090	40658290	+	1	NA	NA	NA	3148	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding	0.010000	0.328358	
mm_67889.1	chr7	99382205	99382405	-	1	NA	NA	NA	756	NM_201352	233552	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0.080000	0.646766	
mm_137643.1	chr17	28530731	28530931	+	1	NA	NA	NA	-30	NM_026290	67645	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.015000	0.557214	
mm_145576.1	chr18	60963460	60963660	+	1	NA	NA	NA	6	NM_001286809	12322	Mm.131530	NM_009792	ENSMUSG00000024617	Camk2a	CaMKII|R74975|mKIAA0968	calcium/calmodulin-dependent protein kinase II alpha	protein-coding	0.005000	0.592040	
mm_46493.1	chr5	105132290	105132490	-	1	NA	NA	NA	7162	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.000000	0.378109	
mm_58257.1	chr6	145076007	145076207	-	1	NA	NA	NA	50	NM_007532	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.050000	0.597015	
mm_156668.1	chrX	159210291	159210491	+	1	NA	NA	NA	-45391	NM_148945	110651	Mm.328476	NM_148945	ENSMUSG00000031309	Rps6ka3	MAPKAPK-1b|MPK-9|Rsk2|S6K-alpha3|p90RSK3|pp90RSK2	ribosomal protein S6 kinase polypeptide 3	protein-coding	0.030000	0.487562	
mm_65026.1	chr7	18431949	18432149	-	1	NA	NA	NA	6	NM_054063	114871	Mm.362025	NM_054063	ENSMUSG00000030373	Psg28	cea16	pregnancy-specific glycoprotein 28	protein-coding	0.010000	0.477612	
mm_89735.1	chr10	99009386	99009586	+	1	NA	NA	NA	94334	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.020000	0.417910	
mm_97307.1	chr11	76679736	76679936	+	1	NA	NA	NA	-37	NM_177709	237858	Mm.127006	NM_177709	ENSMUSG00000046275	Tusc5	C130069F04Rik|DSPB1|Lost1	tumor suppressor candidate 5	protein-coding	0.040000	0.572139	
mm_70881.1	chr8	25201356	25201556	+	1	NA	NA	NA	86	NM_199323	320165	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.190000	0.815920	
mm_39761.1	chr5	30012987	30013187	+	1	NA	NA	NA	-27	NM_001314054	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.005000	0.447761	
mm_69764.1	chr7	141009706	141009906	-	1	NA	NA	NA	938	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.025000	0.487562	
mm_127292.1	chr15	100154092	100154292	+	1	NA	NA	NA	-204	NM_172819	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.020000	0.482587	
mm_146496.1	chr18	3280924	3281124	-	1	NA	NA	NA	108	NM_001311066	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.035000	0.437811	
mm_123423.1	chr14	64417717	64417917	-	1	NA	NA	NA	-538	NM_001347639	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.010000	0.457711	-41(AATTTTAAAAGG,-,0.00)
mm_168725.1	chr12	110695115	110695315	-	1	NA	NA	NA	1180	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.025000	0.482587	
mm_97328.1	chr11	77009157	77009357	+	1	NA	NA	NA	10660	NM_010484	15567	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	0.015000	0.512438	
mm_71353.1	chr8	45658216	45658416	+	1	NA	NA	NA	-3677	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.005000	0.422886	
mm_135630.1	chr16	52301661	52301861	-	1	NA	NA	NA	151320	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.020000	0.358209	
mm_7910.1	chr1	133689909	133690109	-	1	NA	NA	NA	7	NM_172842	240754	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	0.020000	0.547264	
mm_148768.1	chr19	6084945	6085145	+	1	NA	NA	NA	-52	NM_026410	67849	Mm.23526	NM_026410	ENSMUSG00000024791	Cdca5	2610036L13Rik|AL024086|AW536684|C85404	cell division cycle associated 5	protein-coding	0.100000	0.597015	
mm_38491.1	chr4	140845678	140845878	-	1	NA	NA	NA	0	NM_011059	18599	Mm.20854	NM_011059	ENSMUSG00000025329	Padi1	AV236283|Pdi1	peptidyl arginine deiminase, type I	protein-coding	0.025000	0.646766	
mm_138578.1	chr17	35469989	35470189	+	1	NA	NA	NA	0	NM_010391	15007	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	0.085000	0.686567	
mm_31271.1	chr4	45342117	45342317	+	1	NA	NA	NA	116	NM_153167	242418	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	0.135000	0.751244	
mm_96475.1	chr11	67652642	67652842	+	1	NA	NA	NA	-42584	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.010000	0.537313	
mm_66622.1	chr7	45474910	45475110	-	1	NA	NA	NA	-8112	NM_007527	12028	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.020000	0.502488	
mm_151765.1	chr19	5272797	5272997	-	1	NA	NA	NA	222	NM_153129	107975	Mm.234923	NM_153129	ENSMUSG00000024855	Pacs1	AI325977	phosphofurin acidic cluster sorting protein 1	protein-coding	0.115000	0.756219	
mm_34431.1	chr4	145670571	145670771	+	1	NA	NA	NA	-26	NM_001103158	100041379	Mm.276881	NM_001103158	ENSMUSG00000058186	Zfp980	Gm13242|OTTMUSG00000011070	zinc finger protein 980	protein-coding	0.015000	0.507463	
mm_124431.1	chr14	118236926	118237126	-	1	NA	NA	NA	4	NM_177753	223227	Mm.70950	NM_177753	ENSMUSG00000061517	Sox21	Sox25	SRY (sex determining region Y)-box 21	protein-coding	0.075000	0.691542	
mm_5070.1	chr1	195131537	195131737	+	1	NA	NA	NA	-67	NM_013499	12946	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	0.030000	0.447761	-33(CCTTTTAAAAAT,+,0.00)
mm_8078.1	chr1	135585402	135585602	-	1	NA	NA	NA	-147	NM_173437	215690	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.070000	0.597015	
mm_165616.1	chr3	57387234	57387434	+	1	NA	NA	NA	-38076	NM_145539	229302	Mm.26618	NM_145539	ENSMUSG00000027801	Tm4sf4	Iltmp	transmembrane 4 superfamily member 4	protein-coding	0.005000	0.427861	61(CACTTTAAAGGG,-,0.00)
mm_46836.1	chr5	113310659	113310859	-	1	NA	NA	NA	27	NM_001162965	52850	Mm.200203	NM_172718	ENSMUSG00000042216	Sgsm1	2410098H20Rik|AA408781|D5Bwg1524e|E130107M15|NuIP|Rutbc2	small G protein signaling modulator 1	protein-coding	0.105000	0.706468	
mm_135902.1	chr16	67072529	67072729	-	1	NA	NA	NA	415511	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0.015000	0.288557	
mm_85156.1	chr9	96333130	96333330	-	1	NA	NA	NA	31069	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.020000	0.472637	
mm_104280.1	chr11	89733631	89733831	-	1	NA	NA	NA	-36795	NM_001327810	382543	Mm.60997	NM_172534	ENSMUSG00000047773	Ankfn1	4932411E22Rik|Gm1175|nmf9	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding	0.025000	0.567164	
mm_164273.1	chr15	101740145	101740345	+	1	NA	NA	NA	2852	NM_019956	56735	Mm.358677	NM_019956	ENSMUSG00000051879	Krt71	AA589543|Ca|Cal4|Cu|Krt2-6g|mK6irs|mK6irs1	keratin 71	protein-coding	0.045000	0.552239	
mm_113336.1	chr13	31625697	31625897	+	1	NA	NA	NA	-19	NM_010225	14238	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	0.110000	0.691542	
mm_111789.1	chr12	104856399	104856599	-	1	NA	NA	NA	8577	NR_104436	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.015000	0.437811	
mm_95941.1	chr11	58384514	58384714	+	1	NA	NA	NA	3968	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.050000	0.542289	
mm_137553.1	chr17	27561270	27561470	+	1	NA	NA	NA	4357	NM_001002895	106672	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251	expressed sequence AI413582	protein-coding	0.015000	0.582090	
mm_171248.1	chr3	78967073	78967273	-	1	NA	NA	NA	177714	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.090000	0.656716	-61(GCATATATAGAA,+,0.00)
mm_50012.1	chr6	41062230	41062430	+	1	NA	NA	NA	-26821	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.477612	
mm_70366.1	chr8	8693397	8693597	+	1	NA	NA	NA	-2960	NM_176849	234023	Mm.251655	NM_176849	ENSMUSG00000040459	Arglu1	9430010O03Rik|C130008N12	arginine and glutamate rich 1	protein-coding	0.015000	0.457711	-14(GACCATAAAGGG,-,0.00),-12(CCATAAAGGGCC,+,0.00)
mm_88241.1	chr10	71704188	71704388	+	1	NA	NA	NA	276402	NR_003644	108950	Mm.212793	NM_175390	ENSMUSG00000043859	1700049L16Rik	-	hematological and neurological expressed 1-like pseudogene	pseudo	0.010000	0.457711	
mm_99440.1	chr11	102432941	102433141	+	1	NA	NA	NA	2719	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.020000	0.606965	
mm_133280.1	chr16	77421530	77421730	+	1	NA	NA	NA	92302	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.035000	0.482587	
mm_51941.1	chr6	91705765	91705965	+	1	NA	NA	NA	21798	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.010000	0.532338	
mm_32222.1	chr4	101717539	101717739	+	1	NA	NA	NA	232	NM_010704	16847	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.050000	0.597015	
mm_164215.1	chr15	83790339	83790539	+	1	NA	NA	NA	10416	NM_172610	223726	Mm.36395	NM_172610	ENSMUSG00000041708	Mpped1	6230403M19|AW456965|D15Bwg0669e	metallophosphoesterase domain containing 1	protein-coding	0.005000	0.452736	
mm_25763.1	chr3	124385574	124385774	+	1	NA	NA	NA	40354	NM_027939	71824	Mm.331353	NM_027939	ENSMUSG00000027973	1700006A11Rik	-	RIKEN cDNA 1700006A11 gene	protein-coding	0.065000	0.592040	
mm_155390.1	chrX	71962862	71963062	+	1	NA	NA	NA	-20	NM_001081135	208748	Mm.25626	NM_001081135	ENSMUSG00000033361	Prrg3	Gm368	proline rich Gla (G-carboxyglutamic acid) 3 (transmembrane)	protein-coding	0.080000	0.726368	
mm_3036.1	chr1	134037410	134037610	+	1	NA	NA	NA	-5	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.020000	0.532338	
mm_130683.1	chr15	100681121	100681321	-	1	NA	NA	NA	6699	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.015000	0.577114	
mm_83060.1	chr9	37545219	37545419	-	1	NA	NA	NA	6064	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.030000	0.601990	
mm_125518.1	chr15	57694714	57694914	+	1	NA	NA	NA	147	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.045000	0.462687	
mm_170471.1	chr19	11120926	11121126	+	1	NA	NA	NA	9852	NM_027058	69369	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0.050000	0.497512	
mm_156444.1	chrX	142680726	142680926	+	1	NA	NA	NA	-574	NM_177592	209497	Mm.249648	NM_177592	ENSMUSG00000047045	Tmem164	AI316850|AI852450|AW547186|F730011B02	transmembrane protein 164	protein-coding	0.025000	0.487562	-76(CCATTTCAAGGC,+,0.00)
mm_85869.1	chr9	110879970	110880170	-	1	NA	NA	NA	13	NM_146260	20776	Mm.390229	NM_146260	ENSMUSG00000049555	Tmie	5131400L21Rik|Mm.87012|sr	transmembrane inner ear	protein-coding	0.100000	0.676617	
mm_168532.1	chr1	161035449	161035649	+	1	NA	NA	NA	383	NR_002840	14455	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	0.050000	0.497512	
mm_136384.1	chr16	93122994	93123194	-	1	NA	NA	NA	230095	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.000000	0.412935	
mm_99873.1	chr11	109400731	109400931	+	1	NA	NA	NA	-25115	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.025000	0.472637	
mm_64924.1	chr7	16259093	16259293	-	1	NA	NA	NA	145	NM_001173550	12273	Mm.247623	NM_007577	ENSMUSG00000049130	C5ar1	C5aR|C5r1|Cd88|D7Msu1	complement component 5a receptor 1	protein-coding	0.010000	0.527363	-36(GGGTTTAAAAGG,-,0.00)
mm_17670.1	chr2	32137844	32138044	-	1	NA	NA	NA	-13204	NM_172661	227723	Mm.25504	NM_172661	ENSMUSG00000039262	Prrc2b	5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515	proline-rich coiled-coil 2B	protein-coding	0.095000	0.616915	
mm_65974.1	chr7	30442166	30442366	-	1	NA	NA	NA	3316	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.015000	0.592040	
mm_104703.1	chr11	97996081	97996281	-	1	NA	NA	NA	-8	NM_207231	217151	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.015000	0.497512	
mm_89633.1	chr10	96400962	96401162	+	1	NA	NA	NA	174855	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.020000	0.482587	
mm_41599.1	chr5	96163119	96163319	+	1	NA	NA	NA	-1229	NM_144910	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.035000	0.447761	
mm_47629.1	chr5	125293971	125294171	-	1	NA	NA	NA	47023	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.045000	0.547264	
mm_26127.1	chr3	137867796	137867996	+	1	NA	NA	NA	221	NM_001033155	70604	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	0.190000	0.810945	
mm_18700.1	chr2	71663041	71663241	-	1	NA	NA	NA	-56276	NR_037979	381371	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	0.025000	0.457711	-12(GCTTTTCAAGCA,+,0.00)
mm_88489.1	chr10	77715671	77715871	+	1	NA	NA	NA	-36	NM_001205035	100502921	Mm.486156	NM_001205035	ENSMUSG00000094146	Gm10142	ENSMUSG00000064028	predicted gene 10142	protein-coding	0.000000	0.557214	-34(GGATATAAAAGC,-,0.00)
mm_158989.1	chr1	133365208	133365408	+	1	NA	NA	NA	1736	NM_175443	214253	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	0.020000	0.597015	
mm_78042.1	chr9	14500516	14500716	+	1	NA	NA	NA	-3	NM_023153	66070	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	0.060000	0.507463	-98(CGGTTTAAAAAA,-,0.00)
mm_139398.1	chr17	52304445	52304645	+	1	NA	NA	NA	-298164	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.015000	0.492537	
mm_51280.1	chr6	72153640	72153840	+	1	NA	NA	NA	-30543	NR_045165	71265	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.035000	0.517413	
mm_9597.1	chr1	175479317	175479517	-	1	NA	NA	NA	13128	NM_011880	24012	Mm.7956	NM_011880	ENSMUSG00000026527	Rgs7	-	regulator of G protein signaling 7	protein-coding	0.005000	0.383085	
mm_168578.1	chr11	71658955	71659155	-	1	NA	NA	NA	-91648	NM_177618	216881	Mm.48648	NM_177618	ENSMUSG00000020811	Wscd1	mKIAA0523	WSC domain containing 1	protein-coding	0.035000	0.482587	
mm_140111.1	chr17	78835470	78835670	+	1	NA	NA	NA	54	NM_181649	53951	Mm.220253	NM_181649	ENSMUSG00000050668	Gpatch11	2310002B06Rik|C80922|Ccdc75|L26697	G patch domain containing 11	protein-coding	0.100000	0.621891	
mm_113187.1	chr13	24937114	24937314	+	1	NA	NA	NA	-187	NR_102323	493800	Mm.458692	NR_102323		9330162012Rik	-	cDNA RIKEN 9330162012 gene	ncRNA	0.065000	0.552239	
mm_49503.1	chr6	29772908	29773108	+	1	NA	NA	NA	4565	NM_001171000	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.005000	0.363184	
mm_85811.1	chr9	110387619	110387819	-	1	NA	NA	NA	20491	NM_001081043	104831	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.005000	0.656716	
mm_44204.1	chr5	3802971	3803171	-	1	NA	NA	NA	53	NM_001289528	70797	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	0.145000	0.706468	
mm_45256.1	chr5	63650213	63650413	-	1	NA	NA	NA	1210	NM_177006	319807	Mm.319487	NM_028470	ENSMUSG00000090061	Nwd2	3110047P20Rik|B830017A01Rik|Hn1-ps2|mKIAA1239	NACHT and WD repeat domain containing 2	protein-coding	0.100000	0.631841	
mm_130385.1	chr15	97857449	97857649	-	1	NA	NA	NA	-13047	NM_001204278	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.045000	0.587065	
mm_63198.1	chr7	125630553	125630753	+	1	NA	NA	NA	27224	NM_021887	60504	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.005000	0.552239	
mm_164833.1	chr18	38464500	38464700	+	1	NA	NA	NA	45625	NM_022996	65113	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.005000	0.363184	-62(CCTTATATATTG,+,0.00)
mm_60235.1	chr7	43694957	43695157	+	1	NA	NA	NA	4639	NM_174866	317653	Mm.247377	NM_174866	ENSMUSG00000044737	Klk14	GK14	kallikrein related-peptidase 14	protein-coding	0.005000	0.472637	
mm_11558.1	chr2	32757168	32757368	+	1	NA	NA	NA	34	NM_152800	30933	Mm.200695	NM_152800	ENSMUSG00000009563	Tor2a	Prosalusin	torsin family 2, member A	protein-coding	0.085000	0.686567	
mm_31163.1	chr4	43442985	43443185	+	1	NA	NA	NA	808	NM_011571	21754	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.145000	0.796020	
mm_163958.1	chr14	54893948	54894148	+	1	NA	NA	NA	-95	NM_019402	54196	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	0.065000	0.557214	
mm_71626.1	chr8	57436360	57436560	+	1	NA	NA	NA	-19463	NM_009136	20284	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.020000	0.492537	
mm_100814.1	chr11	5099240	5099440	-	1	NA	NA	NA	67	NM_177370	279766	Mm.260866	NM_177370	ENSMUSG00000034175	Rhbdd3	Ptag	rhomboid domain containing 3	protein-coding	0.095000	0.671642	
mm_92707.1	chr10	80754826	80755026	-	1	NA	NA	NA	-280	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.080000	0.572139	
mm_145478.1	chr18	60376431	60376631	+	1	NA	NA	NA	502	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.597015	
mm_13924.1	chr2	120692901	120693101	+	1	NA	NA	NA	38516	NM_026891	68968	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	0.005000	0.487562	-4(TCTTTTAGAGAC,+,0.00)
mm_84365.1	chr9	64810801	64811001	-	1	NA	NA	NA	-110	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.030000	0.517413	
mm_35770.1	chr4	46389013	46389213	-	1	NA	NA	NA	310	NM_029086	74753	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0.055000	0.527363	
mm_41725.1	chr5	102481453	102481653	+	1	NA	NA	NA	162	NM_029270	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.050000	0.552239	
mm_22919.1	chr3	31094988	31095188	+	1	NA	NA	NA	30	NM_001039090	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.175000	0.761194	
mm_29485.1	chr3	115714708	115714908	-	1	NA	NA	NA	247	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.090000	0.651741	
mm_24661.1	chr3	94484245	94484445	+	1	NA	NA	NA	1623	NR_110353	78784	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.035000	0.611940	
mm_62283.1	chr7	99858990	99859190	+	1	NA	NA	NA	-128	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.090000	0.636816	
mm_7626.1	chr1	127537343	127537543	-	1	NA	NA	NA	140578	NM_028135	72160	Mm.281287	NM_028135	ENSMUSG00000026347	Tmem163	2610024A01Rik|SV31	transmembrane protein 163	protein-coding	0.035000	0.522388	
mm_36942.1	chr4	108780693	108780893	-	1	NA	NA	NA	295	NM_001347163	230597	Mm.196776	NM_183300	ENSMUSG00000034557	Zfyve9	Madhip|NSP|SARA|SMADIP	zinc finger, FYVE domain containing 9	protein-coding	0.175000	0.845771	
mm_42116.1	chr5	110839898	110840098	+	1	NA	NA	NA	-19	NM_016681	50883	Mm.279308	NM_016681	ENSMUSG00000029521	Chek2	CHK2|Cds1|HUCDS1|Rad53	checkpoint kinase 2	protein-coding	0.060000	0.537313	
mm_76272.1	chr8	84104912	84105112	-	1	NA	NA	NA	-250	NM_172502	212123	Mm.260557	NM_172502	ENSMUSG00000037103	Dcaf15	6720484B16	DDB1 and CUL4 associated factor 15	protein-coding	0.050000	0.532338	
mm_165731.1	chr3	106349547	106349747	-	1	NA	NA	NA	56535	NM_178412	229688	Mm.261645	NM_178412	ENSMUSG00000027902	Chil6	BYm|Chil8	chitinase-like 6	protein-coding	0.000000	0.407960	-34(GTGTATAAAAAG,-,0.00)
mm_155168.1	chrX	53273324	53273524	+	1	NA	NA	NA	-9	NM_028671	73866	Mm.84527	NM_028671	ENSMUSG00000036013	Fam122c	4930432H15Rik|4930527G05Rik	family with sequence similarity 122, member C	protein-coding	0.000000	0.432836	
mm_65155.1	chr7	19629303	19629503	-	1	NA	NA	NA	35	NM_001290457	19698	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.160000	0.805970	
mm_78563.1	chr9	35740886	35741086	+	1	NA	NA	NA	-63	NM_001167588	100312949	Mm.475848	NM_001167588	ENSMUSG00000091174	Gm17677	Pate-n|Pate10	predicted gene, 17677	protein-coding	0.000000	0.457711	
mm_33315.1	chr4	129072063	129072263	+	1	NA	NA	NA	13892	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.000000	0.368159	
mm_17273.1	chr2	26091846	26092046	-	1	NA	NA	NA	450	NM_001037098	67991	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.060000	0.666667	
mm_55905.1	chr6	83703411	83703611	-	1	NA	NA	NA	7295	NR_075094	574519	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	0.040000	0.577114	
mm_34653.1	chr4	150853958	150854158	+	1	NA	NA	NA	891	NR_040649	73348	Mm.396218	NR_040649	ENSMUSG00000078492	1700045H11Rik	-	RIKEN cDNA 1700045H11 gene	ncRNA	0.030000	0.537313	
mm_791.1	chr1	45337328	45337528	+	1	NA	NA	NA	25890	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.005000	0.522388	
mm_149328.1	chr19	10842882	10843082	+	1	NA	NA	NA	438	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.050000	0.601990	
mm_131531.1	chr16	17646606	17646806	+	1	NA	NA	NA	236	NM_001166164	72315	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.085000	0.651741	
mm_35741.1	chr4	45346540	45346740	-	1	NA	NA	NA	4539	NM_153167	242418	Mm.317668	NM_153167	ENSMUSG00000035572	Dcaf10	AA959934|Wdr32	DDB1 and CUL4 associated factor 10	protein-coding	0.040000	0.407960	
mm_63733.1	chr7	130875316	130875516	+	1	NA	NA	NA	9506	NM_133942	101476	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.005000	0.383085	-92(TCTTTTAAGTCC,+,0.00)
mm_18498.1	chr2	62610381	62610581	-	1	NA	NA	NA	35774	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.005000	0.422886	
mm_104974.1	chr11	100207417	100207617	-	1	NA	NA	NA	-7	NM_001313956	16664	Mm.439898	NM_016958	ENSMUSG00000045545	Krt14	AI626930|CK-14|K14|Krt-1.14|Krt1-14	keratin 14	protein-coding	0.030000	0.577114	
mm_50306.1	chr6	47813673	47813873	+	1	NA	NA	NA	-261	NM_009787	12304	Mm.2442	NM_009787	ENSMUSG00000025823	Pdia4	AI987846|Cai|ERp-72|Erp72	protein disulfide isomerase associated 4	protein-coding	0.025000	0.552239	
mm_142919.1	chr17	53689188	53689388	-	1	NA	NA	NA	27	NM_028232	72415	Mm.153202	NM_028232	ENSMUSG00000023940	Sgol1	3300001M08Rik|C81037|Sgo1	shugoshin-like 1 (S. pombe)	protein-coding	0.140000	0.686567	
mm_17993.1	chr2	38149652	38149852	-	1	NA	NA	NA	137632	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.010000	0.228856	
mm_110857.1	chr12	73325374	73325574	-	1	NA	NA	NA	38626	NM_001037717	625098	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0.005000	0.432836	
mm_128235.1	chr15	36608272	36608472	-	1	NA	NA	NA	601	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.115000	0.701493	
mm_139346.1	chr17	50239304	50239504	+	1	NA	NA	NA	196	NR_131975	446210	Mm.378184	NM_001004437	ENSMUSG00000067103	AY702103	STDP2	cDNA sequence AY702103	ncRNA	0.000000	0.467662	
mm_171895.1	chr5	39798147	39798347	+	1	NA	NA	NA	-153616	NM_010474	15476	Mm.12559	NM_010474	ENSMUSG00000051022	Hs3st1	3-Ost|D5Wsu110e|Hsg3ost	heparan sulfate (glucosamine) 3-O-sulfotransferase 1	protein-coding	0.030000	0.477612	
mm_132204.1	chr16	32551718	32551918	+	1	NA	NA	NA	55537	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.005000	0.457711	-19(GCTTTTAGGCAG,+,0.00),6(CCTTTAAGACTG,+,0.00)
mm_172740.1	chr8	7856396	7856596	-	1	NA	NA	NA	804277	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.035000	0.487562	
mm_29775.1	chr3	127282300	127282500	-	1	NA	NA	NA	121095	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.010000	0.492537	-90(CCCTTAAAACAG,+,0.00)
mm_167508.1	chr9	13317486	13317686	+	1	NA	NA	NA	70630	NM_025534	66396	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.005000	0.432836	
mm_67816.1	chr7	98164622	98164822	-	1	NA	NA	NA	-2380	NM_001301250	12337	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0.015000	0.552239	
mm_71768.1	chr8	66431271	66431471	+	1	NA	NA	NA	45070	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.005000	0.323383	
mm_14732.1	chr2	144270814	144271014	+	1	NA	NA	NA	10	NM_001289630	74528	Mm.386817	NM_028984	ENSMUSG00000027424	Mgme1	8430406I07Rik|AI426476	mitochondrial genome maintainance exonuclease 1	protein-coding	0.140000	0.666667	
mm_90934.1	chr10	12869403	12869603	-	1	NA	NA	NA	-7768	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.125000	0.736318	
mm_99090.1	chr11	99665155	99665355	+	1	NA	NA	NA	705	NM_026834	68768	Mm.416844	NM_026834	ENSMUSG00000075566	Krtap4-6	1110054P19Rik	keratin associated protein 4-6	protein-coding	0.010000	0.482587	
mm_21845.1	chr2	165852111	165852311	-	1	NA	NA	NA	5962	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.020000	0.517413	
mm_125274.1	chr15	36179584	36179784	+	1	NA	NA	NA	154	NM_012031	26942	Mm.295539	NM_012031	ENSMUSG00000037617	Spag1	tpis	sperm associated antigen 1	protein-coding	0.045000	0.567164	
mm_120342.1	chr14	63606409	63606609	+	1	NA	NA	NA	-21	NM_173393	219149	Mm.32071	NM_173393	ENSMUSG00000035067	Xkr6	2700008G24Rik|BC024502|Xrg6	X-linked Kx blood group related 6	protein-coding	0.075000	0.706468	
mm_109891.1	chr12	7380215	7380415	-	1	NA	NA	NA	15	NR_045045	73575	Mm.179463	NR_045045	ENSMUSG00000102096	1700101O22Rik	-	RIKEN cDNA 1700101O22 gene	ncRNA	0.010000	0.447761	
mm_65827.1	chr7	29179106	29179306	-	1	NA	NA	NA	1467	NM_026545	57296	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	0.020000	0.477612	
mm_135580.1	chr16	50432209	50432409	-	1	NA	NA	NA	80	NM_027444	70508	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.100000	0.666667	
mm_47092.1	chr5	117402876	117403076	-	1	NA	NA	NA	-11026	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.020000	0.472637	
mm_157768.1	chrX	73716066	73716266	-	1	NA	NA	NA	38	NM_012060	27061	Mm.17	NM_012060	ENSMUSG00000002015	Bcap31	Bap31	B cell receptor associated protein 31	protein-coding	0.090000	0.651741	
mm_133616.1	chr16	91550441	91550641	+	1	NA	NA	NA	3447	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.005000	0.388060	-57(GTTTTTAAAGAT,+,0.00)
mm_70538.1	chr8	13039231	13039431	+	1	NA	NA	NA	2023	NM_001242368	14058	Mm.262589	NM_007972	ENSMUSG00000031444	F10	Cf10|fX	coagulation factor X	protein-coding	0.015000	0.537313	
mm_58891.1	chr7	17090542	17090742	+	1	NA	NA	NA	16602	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.035000	0.462687	
mm_92028.1	chr10	62456216	62456416	-	1	NA	NA	NA	-6623	NM_181423	338359	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	0.000000	0.333333	
mm_16519.1	chr2	181497093	181497293	+	1	NA	NA	NA	51	NM_001291204	66314	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	0.100000	0.616915	
mm_159449.1	chr3	141212121	141212321	-	1	NA	NA	NA	134	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding	0.015000	0.452736	-85(TCTTTTAAAAAC,+,0.00)
mm_1656.1	chr1	74713055	74713255	+	1	NA	NA	NA	-380	NM_024264	104086	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0.030000	0.502488	
mm_53976.1	chr6	6578533	6578733	-	1	NA	NA	NA	25	NM_009169	20422	Mm.2469	NM_009169	ENSMUSG00000042541	Shfm1	DSS1|Shfdg1|Shfg	split hand/foot malformation (ectrodactyly) type 1	protein-coding	0.115000	0.651741	
mm_72164.1	chr8	72239940	72240140	+	1	NA	NA	NA	22	NM_007456	11767	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	0.085000	0.606965	
mm_61799.1	chr7	84196450	84196650	+	1	NA	NA	NA	-44657	NM_133722	70178	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.015000	0.432836	
mm_151560.1	chr19	60144590	60144790	+	1	NA	NA	NA	15	NR_026942	107376	Mm.245813	NR_026942	ENSMUSG00000053117	E330013P04Rik	9930018I18Rik|AW492152	RIKEN cDNA E330013P04 gene	ncRNA	0.035000	0.487562	
mm_34339.1	chr4	143412852	143413052	+	1	NA	NA	NA	526	NM_172877	242736	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding	0.065000	0.547264	23(GGCTATAAAAGC,-,0.00)
mm_82719.1	chr9	24745232	24745432	-	1	NA	NA	NA	28971	NM_020496	57246	Mm.31452	NM_020496	ENSMUSG00000031965	Tbx20	9430010M06Rik|AL022859|Tbx12	T-box 20	protein-coding	0.010000	0.422886	
mm_106402.1	chr11	118909431	118909631	-	1	NA	NA	NA	41	NM_001024931	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.085000	0.651741	
mm_67459.1	chr7	80403207	80403407	-	1	NA	NA	NA	-495	NM_011046	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.030000	0.542289	
mm_106852.1	chr12	8008315	8008515	+	1	NA	NA	NA	30738	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.353234	
mm_20819.1	chr2	144714460	144714660	-	1	NA	NA	NA	-109106	NM_025490	66328	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	0.000000	0.447761	
mm_103870.1	chr11	83525761	83525961	-	1	NA	NA	NA	-3762	NM_001045543	629303	Mm.390417	NM_001045543	ENSMUSG00000018925	Heatr9	Gm11435|OTTMUSG00000000990	HEAT repeat containing 9	protein-coding	0.010000	0.502488	
mm_62547.1	chr7	102433437	102433637	+	1	NA	NA	NA	-8158	NM_009103	20133	Mm.197486	NM_009103	ENSMUSG00000030978	Rrm1	RnrM1	ribonucleotide reductase M1	protein-coding	0.010000	0.348259	49(CCGTTTAAAAAG,-,0.00)
mm_112166.1	chr12	113407213	113407413	-	1	NA	NA	NA	-82252	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.482587	
mm_158403.1	chrX	136837508	136837708	-	1	NA	NA	NA	14862	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.383085	
mm_85638.1	chr9	107655006	107655206	-	1	NA	NA	NA	12293	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.035000	0.557214	
mm_73172.1	chr8	95020823	95021023	+	1	NA	NA	NA	3231	NM_173036	54672	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.035000	0.611940	
mm_89745.1	chr10	99108072	99108272	+	1	NA	NA	NA	37	NM_015737	14426	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.045000	0.597015	
mm_68893.1	chr7	126448561	126448761	-	1	NA	NA	NA	14412	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.055000	0.587065	
mm_44150.1	chr5	150260109	150260309	+	1	NA	NA	NA	279	NM_172887	320365	Mm.216590	NM_172887	ENSMUSG00000056602	Fry	13CDNA73|9330186A19Rik|AF346502|AI462658|C87180|D930046M03|cg003|mKIAA4143	FRY microtubule binding protein	protein-coding	0.035000	0.537313	-79(TCCTTTAAATGA,-,0.00)
mm_129219.1	chr15	76538651	76538851	-	1	NA	NA	NA	-5	NM_013909	30840	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	0.085000	0.631841	
mm_67253.1	chr7	75575192	75575392	-	1	NA	NA	NA	119758	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.010000	0.442786	-98(TACCCTAAAAGC,-,0.00)
mm_20613.1	chr2	131854948	131855148	-	1	NA	NA	NA	4699	NM_001166206	71995	Mm.22	NM_028045	ENSMUSG00000037482	Erv3	1600014E20Rik|AA389086|AI426069|AI448024|D19349	endogenous retroviral sequence 3	protein-coding	0.000000	0.522388	
mm_88114.1	chr10	69208452	69208652	+	1	NA	NA	NA	0	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.040000	0.532338	
mm_98582.1	chr11	95748298	95748498	+	1	NA	NA	NA	-669	NM_201609	268469	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	0.025000	0.452736	
mm_6177.1	chr1	65100556	65100756	-	1	NA	NA	NA	2707	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.035000	0.532338	-50(GGCTTTATGAGA,-,0.00)
mm_106258.1	chr11	117873373	117873573	-	1	NA	NA	NA	53	NM_027919	71776	Mm.3200	NM_027919	ENSMUSG00000017713	Tha1	1300017K07Rik|GLY1	threonine aldolase 1	protein-coding	0.075000	0.611940	
mm_127295.1	chr15	100181343	100181543	+	1	NA	NA	NA	6593	NR_037311	100499528		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0.040000	0.532338	-33(GTCCATAAAGAC,-,0.00)
mm_45634.1	chr5	76363689	76363889	-	1	NA	NA	NA	-12	NM_019515	56183	Mm.154879	NM_019515	ENSMUSG00000029236	Nmu	-	neuromedin U	protein-coding	0.070000	0.631841	
mm_105779.1	chr11	109722152	109722352	-	1	NA	NA	NA	4	NM_153782	208659	Mm.208662	NM_153782	ENSMUSG00000020614	Fam20a	AI606893	family with sequence similarity 20, member A	protein-coding	0.065000	0.676617	
mm_43306.1	chr5	134702973	134703173	+	1	NA	NA	NA	-14483	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.015000	0.562189	
mm_129684.1	chr15	81408167	81408367	-	1	NA	NA	NA	6	NM_021317	57755	Mm.440590	NM_021317	ENSMUSG00000047108	Dnajb7	4933424H20Rik|Dj5|mDj5	DnaJ heat shock protein family (Hsp40) member B7	protein-coding	0.010000	0.462687	
mm_145335.1	chr18	56431800	56432000	+	1	NA	NA	NA	-232	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.045000	0.592040	
mm_72141.1	chr8	72135156	72135356	+	1	NA	NA	NA	-36	NM_001001491	326618	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	0.115000	0.771144	
mm_14861.1	chr2	148789278	148789478	+	1	NA	NA	NA	17	NM_027054	69362	Mm.280779	NM_027054	ENSMUSG00000027443	Cst12	1700006F03Rik|CRES3	cystatin 12	protein-coding	0.020000	0.557214	
mm_11935.1	chr2	52732171	52732371	+	1	NA	NA	NA	9878	NM_019667	56324	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0.015000	0.532338	
mm_83391.1	chr9	44605258	44605458	-	1	NA	NA	NA	466	NM_181324	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.060000	0.676617	
mm_73013.1	chr8	93963391	93963591	+	1	NA	NA	NA	49149	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.035000	0.482587	
mm_163433.1	chr12	85374096	85374296	-	1	NA	NA	NA	521	NM_026775	68581	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.095000	0.641791	
mm_56376.1	chr6	94241230	94241430	-	1	NA	NA	NA	-3888	NR_130996	78178	Mm.452749	NR_130996	ENSMUSG00000045095	4930511A08Rik	-	RIKEN cDNA 4930511A08 gene	ncRNA	0.010000	0.527363	
mm_133931.1	chr16	3723270	3723470	-	1	NA	NA	NA	-5246	NM_001161791	54483	Mm.143718	NM_019453	ENSMUSG00000022534	Mefv	FMF|TRIM20|pyrin	Mediterranean fever	protein-coding	0.010000	0.552239	
mm_141909.1	chr17	34969323	34969523	-	1	NA	NA	NA	2733	NM_010479	193740	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	0.015000	0.437811	
mm_24222.1	chr3	88685727	88685927	+	1	NA	NA	NA	33	NM_028814	74200	Mm.251800	NM_028814	ENSMUSG00000028060	2810403A07Rik	A430106P18Rik|AI256352|AI451678|Blom7|Kiaa0907	RIKEN cDNA 2810403A07 gene	protein-coding	0.110000	0.706468	
mm_40331.1	chr5	43910753	43910953	+	1	NA	NA	NA	42044	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.010000	0.378109	
mm_166330.1	chr5	113550314	113550514	+	1	NA	NA	NA	-6	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.025000	0.606965	
mm_15982.1	chr2	166805456	166805656	+	1	NA	NA	NA	-25	NM_001085495	99371	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.150000	0.771144	
mm_141852.1	chr17	34802375	34802575	-	1	NA	NA	NA	1951	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.010000	0.611940	
mm_2820.1	chr1	131019978	131020178	+	1	NA	NA	NA	233	NM_010548	16153	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.020000	0.512438	
mm_145227.1	chr18	50095616	50095816	+	1	NA	NA	NA	-32485	NM_008292	15488	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.005000	0.417910	
mm_106099.1	chr11	116237990	116238190	-	1	NA	NA	NA	1	NM_025276	14027	Mm.293683	NM_025276	ENSMUSG00000034282	Evpl	-	envoplakin	protein-coding	0.085000	0.721393	
mm_49358.1	chr6	22330733	22330933	+	1	NA	NA	NA	25248	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.035000	0.467662	47(GTCTTTAAGAAG,-,0.00)
mm_30592.1	chr4	6357700	6357900	+	1	NA	NA	NA	-7880	NM_016807	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.010000	0.393035	49(ACTTTTATAAGC,+,0.00)
mm_54730.1	chr6	40585739	40585939	-	1	NA	NA	NA	-34	NM_001038604	23845	Mm.103765	NM_021364	ENSMUSG00000029915	Clec5a	Clecsf5|Ly100|MDL-1|Mdl1	C-type lectin domain family 5, member a	protein-coding	0.010000	0.482587	
mm_104714.1	chr11	98053152	98053352	-	1	NA	NA	NA	210	NM_146028	217154	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0.090000	0.671642	
mm_48254.1	chr5	137827743	137827943	-	1	NA	NA	NA	8435	NM_153510	231805	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.010000	0.502488	
mm_8215.1	chr1	138144939	138145139	-	1	NA	NA	NA	30087	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.313433	
mm_9848.1	chr1	184732334	184732534	-	1	NA	NA	NA	59	NM_008250	15284	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.105000	0.621891	
mm_156540.1	chrX	151169409	151169609	+	1	NA	NA	NA	-28569	NM_001271679	279561	Mm.441474	NM_001271678	ENSMUSG00000041245	Wnk3	Prkwnk3|Wnk3-ps	WNK lysine deficient protein kinase 3	protein-coding	0.085000	0.711443	
mm_12101.1	chr2	61533391	61533591	+	1	NA	NA	NA	-45095	NM_011529	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.010000	0.427861	
mm_67875.1	chr7	99182641	99182841	-	1	NA	NA	NA	-28	NM_026384	67800	Mm.180189	NM_026384	ENSMUSG00000030747	Dgat2	0610010B06Rik|ARAT|DGAT-2	diacylglycerol O-acyltransferase 2	protein-coding	0.110000	0.671642	
mm_42720.1	chr5	120519631	120519831	+	1	NA	NA	NA	8539	NM_001177594	170756	Mm.291070	NM_133221	ENSMUSG00000032754	Slc8b1	AF261233|NCKX6|NCLX|Slc24a6	solute carrier family 8 (sodium/lithium/calcium exchanger), member B1	protein-coding	0.050000	0.611940	
mm_108621.1	chr12	85598320	85598520	+	1	NA	NA	NA	-685	NM_001205052	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.015000	0.482587	
mm_100295.1	chr11	117829276	117829476	+	1	NA	NA	NA	-3362	NM_009387	21877	Mm.2661	NM_009387	ENSMUSG00000025574	Tk1	D530002A18Rik|Tk-1|Tk1a|Tk1b	thymidine kinase 1	protein-coding	0.020000	0.577114	
mm_74345.1	chr8	127447574	127447774	+	1	NA	NA	NA	148022	NM_001013580	93742	Mm.299254	NM_033620	ENSMUSG00000025812	Pard3	AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip	par-3 family cell polarity regulator	protein-coding	0.005000	0.437811	
mm_45497.1	chr5	72168028	72168228	-	1	NA	NA	NA	55	NM_178599	27784	Mm.44223	NM_178599	ENSMUSG00000029213	Commd8	C77770|D5Buc26e	COMM domain containing 8	protein-coding	0.080000	0.621891	
mm_66205.1	chr7	34242246	34242446	-	1	NA	NA	NA	-12010	NM_008155	14751	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	0.045000	0.582090	
mm_57058.1	chr6	122486407	122486607	-	1	NA	NA	NA	-202	NM_027664	108653	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	0.175000	0.810945	
mm_39373.1	chr5	12383211	12383411	+	1	NA	NA	NA	145	NM_028882	108151	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.035000	0.572139	
mm_109299.1	chr12	109559856	109560056	+	1	NA	NA	NA	-3736	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.015000	0.462687	
mm_151582.1	chr19	61224429	61224629	+	1	NA	NA	NA	3889	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.020000	0.422886	
mm_150340.1	chr19	34583038	34583238	+	1	NA	NA	NA	-391	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.010000	0.402985	
mm_125663.1	chr15	64613699	64613899	+	1	NA	NA	NA	-230880	NM_010026	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.010000	0.532338	-35(GGATTTAAAAAG,-,0.00)
mm_100875.1	chr11	5971632	5971832	-	1	NA	NA	NA	15974	NM_019661	56418	Mm.294821	NM_019661	ENSMUSG00000002741	Ykt6	0610042I15Rik|1810013M05Rik|AW105923	YKT6 v-SNARE homolog (S. cerevisiae)	protein-coding	0.055000	0.537313	
mm_97357.1	chr11	77500807	77501007	+	1	NA	NA	NA	7495	NM_001004144	216963	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0.025000	0.587065	
mm_148683.1	chr19	5689684	5689884	+	1	NA	NA	NA	653	NM_022012	26403	Mm.185026	NM_022012	ENSMUSG00000004054	Map3k11	2610017K16Rik|Mlk3|PTK1|SPRK	mitogen-activated protein kinase kinase kinase 11	protein-coding	0.035000	0.592040	
mm_34577.1	chr4	150103506	150103706	+	1	NA	NA	NA	-15738	NM_019741	56485	Mm.260220	NM_019741	ENSMUSG00000028976	Slc2a5	AI526984|Glut5|Slc5a	solute carrier family 2 (facilitated glucose transporter), member 5	protein-coding	0.010000	0.447761	
mm_65676.1	chr7	28316716	28316916	-	1	NA	NA	NA	-4770	NM_025616	66525	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	0.015000	0.527363	
mm_53946.1	chr6	5193724	5193924	-	1	NA	NA	NA	122	NM_011134	18979	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.015000	0.597015	
mm_80558.1	chr9	83548189	83548389	+	1	NA	NA	NA	-49	NM_172507	212531	Mm.491246	NM_172507	ENSMUSG00000032261	Sh3bgrl2	A930014C21Rik|AA408038|B930089I21	SH3 domain binding glutamic acid-rich protein like 2	protein-coding	0.135000	0.726368	
mm_168334.1	chr11	118304411	118304611	+	1	NA	NA	NA	-14267	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.030000	0.492537	
mm_160644.1	chr9	109875960	109876160	+	1	NA	NA	NA	481	NM_007658	12530	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	0.090000	0.716418	
mm_145059.1	chr18	40332381	40332581	+	1	NA	NA	NA	74120	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.000000	0.383085	
mm_123698.1	chr14	69707494	69707694	-	1	NA	NA	NA	-10	NM_001146012	71843	Mm.27738	NM_001146012	ENSMUSG00000034194	R3hcc1	1700020M16Rik|AA407796	R3H domain and coiled-coil containing 1	protein-coding	0.075000	0.626866	
mm_157510.1	chrX	49273663	49273863	-	1	NA	NA	NA	14479	NM_001271449	209224	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	0.015000	0.492537	
mm_10524.1	chr2	16384575	16384775	+	1	NA	NA	NA	28371	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.010000	0.318408	
mm_145320.1	chr18	54640393	54640593	+	1	NA	NA	NA	28749	NR_045400	328957	Mm.402781	NR_045400		9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	0.000000	0.323383	-77(GACCATTAAAGA,-,0.00)
mm_73459.1	chr8	106604157	106604357	+	1	NA	NA	NA	907	NM_009864	12550	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	0.035000	0.616915	
mm_9195.1	chr1	171222353	171222553	-	1	NA	NA	NA	61	NM_001037170	641376	Mm.288374	NM_001037170	ENSMUSG00000005674	Tomm40l	-	translocase of outer mitochondrial membrane 40 homolog-like (yeast)	protein-coding	0.020000	0.537313	
mm_29996.1	chr3	135588218	135588418	-	1	NA	NA	NA	102707	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.015000	0.333333	
mm_80916.1	chr9	100807204	100807404	+	1	NA	NA	NA	163681	NM_009282	20842	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	0.005000	0.333333	
mm_105470.1	chr11	105456613	105456813	-	1	NA	NA	NA	22	NM_172568	632687	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|OTTMUSG00000002847|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.095000	0.706468	
mm_83740.1	chr9	51101940	51102140	-	1	NA	NA	NA	38	NM_177702	235345	Mm.72828	NM_177702	ENSMUSG00000032057	4833427G06Rik	-	RIKEN cDNA 4833427G06 gene	protein-coding	0.060000	0.592040	
mm_14454.1	chr2	131186892	131187092	+	1	NA	NA	NA	44	NM_001111075	12531	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	0.055000	0.656716	-34(GAATATATAAGG,-,0.00)
mm_69826.1	chr7	141266323	141266523	-	1	NA	NA	NA	1	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.040000	0.601990	-33(TACTATAAAAGC,-,0.00)
mm_19544.1	chr2	98662773	98662973	-	1	NA	NA	NA	1195216	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.040000	0.358209	
mm_88786.1	chr10	80608752	80608952	+	1	NA	NA	NA	-408	NR_105877	102465550		NR_105877	ENSMUSG00000099283	Mir6912	Gm27990|mmu-mir-6912	microRNA 6912	ncRNA	0.005000	0.577114	
mm_84213.1	chr9	61634930	61635130	-	1	NA	NA	NA	262664	NM_001083927	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.015000	0.462687	
mm_100781.1	chr11	4808282	4808482	-	1	NA	NA	NA	24753	NM_001252253	18016	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	0.015000	0.457711	
mm_38783.1	chr4	148080148	148080348	-	1	NA	NA	NA	7816	NM_009642	11610	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.010000	0.557214	
mm_50431.1	chr6	48845042	48845242	+	1	NA	NA	NA	3486	NM_001098271	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.010000	0.532338	
mm_37813.1	chr4	130934993	130935193	-	1	NA	NA	NA	-9292	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.010000	0.477612	70(CGCTATTTAAGC,-,0.00)
mm_26564.1	chr3	146521070	146521270	+	1	NA	NA	NA	253	NM_027332	70285	Mm.28128	NM_027332	ENSMUSG00000028187	Rpf1	2210420E24Rik|2310066N05Rik|Bxdc5	ribosome production factor 1 homolog	protein-coding	0.145000	0.721393	
mm_54640.1	chr6	38837167	38837367	-	1	NA	NA	NA	44	NM_001136065	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.010000	0.487562	
mm_134527.1	chr16	19236780	19236980	-	1	NA	NA	NA	49861	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.010000	0.592040	
mm_167781.1	chr9	118926569	118926769	+	1	NA	NA	NA	133	NM_133710	69274	Mm.439928	NM_133710	ENSMUSG00000047409	Ctdspl	2810418J22Rik|AI426263|HYA22|SCP3	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like	protein-coding	0.205000	0.850746	
mm_72307.1	chr8	77518226	77518426	+	1	NA	NA	NA	-419	NM_030113	78514	Mm.165974	NM_030113	ENSMUSG00000037148	Arhgap10	A930033B01Rik|PSGAP-m|PSGAP-s	Rho GTPase activating protein 10	protein-coding	0.080000	0.567164	
mm_122658.1	chr14	51911901	51912101	-	1	NA	NA	NA	1487	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.030000	0.592040	
mm_28116.1	chr3	86799087	86799287	-	1	NA	NA	NA	121697	NM_001195496	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.030000	0.562189	
mm_7059.1	chr1	87394628	87394828	-	1	NA	NA	NA	1	NM_001110227	100040591	Mm.443539	NM_001110227	ENSMUSG00000079436	Kcnj13	-	potassium inwardly-rectifying channel, subfamily J, member 13	protein-coding	0.015000	0.482587	
mm_143033.1	chr17	56609865	56610065	-	1	NA	NA	NA	-194	NM_153152	224904	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0.080000	0.606965	
mm_110856.1	chr12	73324107	73324307	-	1	NA	NA	NA	37359	NM_001037717	625098	Mm.32075	NM_001037717	ENSMUSG00000044712	Slc38a6	AW322671|EG625098	solute carrier family 38, member 6	protein-coding	0.025000	0.502488	
mm_64084.1	chr7	140954348	140954548	+	1	NA	NA	NA	1513	NM_030694	80876	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.005000	0.527363	
mm_63594.1	chr7	128139165	128139365	+	1	NA	NA	NA	9697	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.005000	0.398010	
mm_133957.1	chr16	4045060	4045260	-	1	NA	NA	NA	8015	NM_010061	13419	Mm.291048	NM_010061	ENSMUSG00000005980	Dnase1	AI788650|DNaseI|Dnl1	deoxyribonuclease I	protein-coding	0.010000	0.398010	
mm_19909.1	chr2	114201331	114201531	-	1	NA	NA	NA	1	NM_175466	228491	Mm.132523	NM_175466	ENSMUSG00000040321	Zfp770	6430601A21Rik|Znf770	zinc finger protein 770	protein-coding	0.100000	0.631841	
mm_50416.1	chr6	48746170	48746370	+	1	NA	NA	NA	73	NM_175035	317757	Mm.455917	NM_175035	ENSMUSG00000043505	Gimap5	D630024P16|E230026N22Rik	GTPase, IMAP family member 5	protein-coding	0.020000	0.522388	
mm_113425.1	chr13	34090611	34090811	+	1	NA	NA	NA	-12703	NM_009450	22151	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	0.020000	0.452736	
mm_137431.1	chr17	26275697	26275897	+	1	NA	NA	NA	22887	NR_037905	66978	Mm.440216	NM_025881	ENSMUSG00000024188	Luc7l	1810045C04Rik|2410018D03Rik	Luc7-like	protein-coding	0.030000	0.477612	
mm_37614.1	chr4	126968068	126968268	-	1	NA	NA	NA	-245	NM_001114399	67785	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0.060000	0.646766	
mm_136147.1	chr16	87495750	87495950	-	1	NA	NA	NA	19	NM_009840	12469	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	0.130000	0.711443	
mm_109357.1	chr12	109630000	109630200	+	1	NA	NA	NA	-5912	NR_046302	449562		NR_046302	ENSMUSG00000088294	AF357425	MBII-48	snoRNA AF357425	snoRNA	0.020000	0.487562	
mm_89052.1	chr10	82877227	82877427	+	1	NA	NA	NA	10701	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.035000	0.552239	
mm_65275.1	chr7	24316525	24316725	-	1	NA	NA	NA	41	NM_009568	22756	Mm.295762	NM_009568	ENSMUSG00000074282	Zfp94	-	zinc finger protein 94	protein-coding	0.065000	0.572139	
mm_56604.1	chr6	112271204	112271404	-	1	NA	NA	NA	-2454	NM_144799	30937	Mm.234441	NM_144799	ENSMUSG00000057604	Lmcd1	AW455500|AW553074|dyxin	LIM and cysteine-rich domains 1	protein-coding	0.000000	0.477612	
mm_73839.1	chr8	117461049	117461249	+	1	NA	NA	NA	1884	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.040000	0.482587	
mm_107721.1	chr12	56535197	56535397	+	1	NA	NA	NA	1611	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.060000	0.527363	
mm_21171.1	chr2	154689473	154689673	-	1	NA	NA	NA	32547	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.040000	0.577114	
mm_17511.1	chr2	29124721	29124921	-	1	NA	NA	NA	-171	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.090000	0.616915	
mm_31292.1	chr4	45972207	45972407	+	1	NA	NA	NA	10	NM_146142	100121	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.125000	0.761194	
mm_55092.1	chr6	49254181	49254381	-	1	NA	NA	NA	9771	NM_001347209	101214	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha homolog (Drosophila)	protein-coding	0.000000	0.422886	
mm_166873.1	chr7	25305848	25306048	+	1	NA	NA	NA	-160	NM_183311	330485	Mm.260740	NM_183311	ENSMUSG00000043843	Tmem145	B930076A02Rik	transmembrane protein 145	protein-coding	0.025000	0.522388	
mm_58595.1	chr7	5020358	5020558	+	1	NA	NA	NA	82	NM_001033383	319748	Mm.86607	NM_001033383	ENSMUSG00000074405	Zfp865	6430526N21Rik|Znf865	zinc finger protein 865	protein-coding	0.110000	0.696517	
mm_147518.1	chr18	52527653	52527853	-	1	NA	NA	NA	1968	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.015000	0.407960	
mm_29048.1	chr3	103414518	103414718	-	1	NA	NA	NA	135325	NM_001079830	94093	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.020000	0.447761	
mm_25313.1	chr3	106131912	106132112	+	1	NA	NA	NA	18630	NM_023186	81600	Mm.46418	NM_023186	ENSMUSG00000062778	Chia1	2200003E03Rik|AMCase|Chia|YNL	chitinase, acidic 1	protein-coding	0.000000	0.407960	
mm_27808.1	chr3	78508660	78508860	-	1	NA	NA	NA	636127	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.015000	0.318408	40(CTTTTTCTAGGC,+,0.00)
mm_88366.1	chr10	75942955	75943155	+	1	NA	NA	NA	-2383	NM_001277132	333670	Mm.291320	NM_001037714	ENSMUSG00000050157	Gm867	Gm736	predicted gene 867	protein-coding	0.020000	0.442786	
mm_96494.1	chr11	67966370	67966570	+	1	NA	NA	NA	-13	NM_018768	55943	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	0.070000	0.621891	
mm_13257.1	chr2	98664989	98665189	+	1	NA	NA	NA	1197432	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.025000	0.348259	
mm_11022.1	chr2	26628352	26628552	+	1	NA	NA	NA	-5	NM_019833	56279	Mm.279863	NM_019833	ENSMUSG00000036186	Fam69b	AB030186|AW209000|B230317C12Rik|PIP49	family with sequence similarity 69, member B	protein-coding	0.160000	0.721393	
mm_50359.1	chr6	48647214	48647414	+	1	NA	NA	NA	-47	NM_001286629	243374	Mm.86514	NM_212486	ENSMUSG00000064262	Gimap8	Gm457|IAN9|IMAP8	GTPase, IMAP family member 8	protein-coding	0.010000	0.502488	
mm_13271.1	chr2	98667141	98667341	+	1	NA	NA	NA	1199584	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.035000	0.363184	
mm_98802.1	chr11	97041459	97041659	+	1	NA	NA	NA	-27	NM_026154	107732	Mm.208946	NM_026154	ENSMUSG00000001445	Mrpl10	0610040E02Rik|C78440|MRP-L8|Rpml8	mitochondrial ribosomal protein L10	protein-coding	0.090000	0.577114	
mm_48379.1	chr5	139736212	139736412	-	1	NA	NA	NA	21	NM_174850	231830	Mm.240510	NM_174850	ENSMUSG00000036718	Micall2	A930021H16Rik|JRAB|MICAL-L2|mFLJ00139	MICAL-like 2	protein-coding	0.090000	0.711443	
mm_128524.1	chr15	54312291	54312491	-	1	NA	NA	NA	-33907	NM_008764	18383	Mm.15383	NM_008764	ENSMUSG00000063727	Tnfrsf11b	OCIF|Opg|TR1	tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin)	protein-coding	0.025000	0.417910	
mm_153089.1	chr19	32389778	32389978	-	1	NA	NA	NA	662	NR_033198	67188	Mm.391160	NR_033198	ENSMUSG00000097787	2700046G09Rik	-	RIKEN cDNA 2700046G09 gene	ncRNA	0.055000	0.542289	
mm_18447.1	chr2	60924539	60924739	-	1	NA	NA	NA	38565	NM_020296	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.005000	0.318408	
mm_12223.1	chr2	67670090	67670290	+	1	NA	NA	NA	-5267	NR_106083	102465706		NR_106083	ENSMUSG00000098299	Mir7224	Gm27971|mmu-mir-7224	microRNA 7224	ncRNA	0.000000	0.323383	
mm_172396.1	chr7	141174480	141174680	+	1	NA	NA	NA	-1729	NM_001172100	107702	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.010000	0.432836	
mm_82888.1	chr9	32541287	32541487	-	1	NA	NA	NA	65	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.065000	0.557214	
mm_70595.1	chr8	13288097	13288297	+	1	NA	NA	NA	-71	NM_001042650	102323	Mm.368890	NM_001024504	ENSMUSG00000038506	Dcun1d2	AW495713|mFLJ10704	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	protein-coding	0.105000	0.651741	
mm_109901.1	chr12	7949972	7950172	-	1	NA	NA	NA	-27605	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.378109	
mm_55570.1	chr6	71391205	71391405	-	1	NA	NA	NA	17878	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.025000	0.427861	
mm_134893.1	chr16	29834629	29834829	-	1	NA	NA	NA	144395	NR_037689	328657	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.015000	0.422886	
mm_164606.1	chr17	30414623	30414823	-	1	NA	NA	NA	-18543	NR_030688	623169	Mm.440508	NR_030688		Gm6402	EG623169	ribosomal protein S17 pseudogene	pseudo	0.005000	0.432836	
mm_44114.1	chr5	149439556	149439756	+	1	NA	NA	NA	-4	NM_029464	75860	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	0.070000	0.606965	
mm_119943.1	chr14	54986413	54986613	+	1	NA	NA	NA	8036	NM_080728	140781	Mm.457983	NM_080728	ENSMUSG00000053093	Myh7	B-MHC|MyHC-I|Myhc-b|Myhcb|beta-MHC	myosin, heavy polypeptide 7, cardiac muscle, beta	protein-coding	0.025000	0.482587	
mm_51347.1	chr6	72550096	72550296	+	1	NA	NA	NA	549	NM_001271395	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.010000	0.492537	84(GTCCTTAAAAGG,-,0.00),86(CCTTAAAAGGTA,+,0.00)
mm_102720.1	chr11	67116722	67116922	-	1	NA	NA	NA	3258	NR_038055	74184	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	0.010000	0.472637	
mm_97698.1	chr11	80173313	80173513	+	1	NA	NA	NA	-10459	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.015000	0.537313	
mm_61741.1	chr7	82209393	82209593	+	1	NA	NA	NA	-50415	NM_001277955	20408	Mm.736	NM_017400	ENSMUSG00000030638	Sh3gl3	EEN-B2|SH3P13|Sh3d2c|Sh3d2c2	SH3-domain GRB2-like 3	protein-coding	0.005000	0.422886	
mm_45148.1	chr5	49216055	49216255	-	1	NA	NA	NA	69504	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.000000	0.393035	
mm_120450.1	chr14	65968519	65968719	+	1	NA	NA	NA	136	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.060000	0.621891	-8(CGCTATAAATAG,-,0.00)
mm_13633.1	chr2	113708590	113708790	+	1	NA	NA	NA	-140	NR_040614	75166	Mm.410811	NR_040614	ENSMUSG00000084798	4930533B01Rik	-	RIKEN cDNA 4930533B01 gene	ncRNA	0.005000	0.497512	
mm_96821.1	chr11	69994507	69994707	+	1	NA	NA	NA	-1159	NM_001291125	78246	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.015000	0.532338	
mm_98872.1	chr11	97799537	97799737	+	1	NA	NA	NA	-35	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.115000	0.726368	
mm_75301.1	chr8	41101802	41102002	-	1	NA	NA	NA	12765	NM_001286413	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.025000	0.527363	
mm_142816.1	chr17	51744861	51745061	-	1	NA	NA	NA	67093	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.000000	0.432836	
mm_756.1	chr1	43933517	43933717	+	1	NA	NA	NA	-377	NM_001310540	22019	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.060000	0.557214	
mm_143433.1	chr17	70851535	70851735	-	1	NA	NA	NA	99	NM_001164075	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.045000	0.567164	
mm_57455.1	chr6	125165637	125165837	-	1	NA	NA	NA	36	NM_008084	14433	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0.075000	0.631841	
mm_109281.1	chr12	109547891	109548091	+	1	NA	NA	NA	2593	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.005000	0.462687	
mm_105697.1	chr11	108044581	108044781	-	1	NA	NA	NA	47833	NR_106082	102465705		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0.005000	0.412935	30(CTTCATATAAGG,-,0.00)
mm_15974.1	chr2	166156395	166156595	+	1	NA	NA	NA	-812	NM_028072	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.010000	0.492537	
mm_68149.1	chr7	102249981	102250181	-	1	NA	NA	NA	37	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.100000	0.781095	
mm_147096.1	chr18	35649396	35649596	-	1	NA	NA	NA	-129	NM_027222	69816	Mm.27252	NM_027222	ENSMUSG00000024353	Mzb1	2010001M09Rik|AV064572|PACAP|pERp1	marginal zone B and B1 cell-specific protein 1	protein-coding	0.030000	0.562189	
mm_84339.1	chr9	64178261	64178461	-	1	NA	NA	NA	-936	NM_183316	330959	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	0.010000	0.467662	
mm_21761.1	chr2	164840077	164840277	-	1	NA	NA	NA	6404	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.050000	0.597015	
mm_158667.1	chrX	157557072	157557272	-	1	NA	NA	NA	11813	NM_001098723	100073351	Mm.491276	NM_001098723	ENSMUSG00000046873	Yy2	-	Yy2 transcription factor	protein-coding	0.010000	0.323383	-66(CCCTCTTTAGGG,-,0.00)
mm_50606.1	chr6	49372265	49372465	+	1	NA	NA	NA	4626	NM_172727	231946	Mm.35199	NM_172727	ENSMUSG00000047115	Fam221a	D330028D13Rik	family with sequence similarity 221, member A	protein-coding	0.005000	0.467662	
mm_108672.1	chr12	86520464	86520664	+	1	NA	NA	NA	98920	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.000000	0.507463	
mm_61059.1	chr7	49959697	49959897	+	1	NA	NA	NA	-15553	NM_001037906	338352	Mm.383528	NM_001037906	ENSMUSG00000055409	Nell1	B230343H07Rik|l7R6	NEL-like 1	protein-coding	0.025000	0.522388	
mm_128501.1	chr15	52478266	52478466	-	1	NA	NA	NA	182813	NM_172816	239436	Mm.208831	NM_172816	ENSMUSG00000022315	Slc30a8	C820002P14Rik|ZnT-8|ZnT8	solute carrier family 30 (zinc transporter), member 8	protein-coding	0.060000	0.507463	
mm_3385.1	chr1	139501640	139501840	+	1	NA	NA	NA	33	NM_031164	14060	Mm.30105	NM_031164	ENSMUSG00000026368	F13b	Cf-13b|Cf13b	coagulation factor XIII, beta subunit	protein-coding	0.005000	0.333333	
mm_103876.1	chr11	83527568	83527768	-	1	NA	NA	NA	2850	NM_013653	20304	Mm.284248	NM_013653	ENSMUSG00000035042	Ccl5	MuRantes|RANTES|SISd|Scya5|TCP228	chemokine (C-C motif) ligand 5	protein-coding	0.005000	0.427861	-35(CCCTATAAAACC,+,0.00)
mm_147775.1	chr18	61484720	61484920	-	1	NA	NA	NA	-213	NR_045419	442846	Mm.417648	NR_045419		A530050N04Rik	-	RIKEN cDNA A530050N04 gene	ncRNA	0.035000	0.492537	
mm_67183.1	chr7	73816371	73816571	-	1	NA	NA	NA	32	NR_077222	100579147	Mm.109205	NR_077222	ENSMUSG00000074067	Gm10619	4932443D20|ENSMUSG00000074067	predicted gene 10619	ncRNA	0.020000	0.527363	
mm_126576.1	chr15	82268707	82268907	+	1	NA	NA	NA	-6128	NM_011889	24050	Mm.309707	NM_011889	ENSMUSG00000022456	Sept3	3110018K01Rik|AV154067|B530002E20Rik|Sep3	septin 3	protein-coding	0.030000	0.537313	
mm_20543.1	chr2	131068045	131068245	-	1	NA	NA	NA	-4331	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.000000	0.547264	
mm_150028.1	chr19	29373655	29373855	+	1	NA	NA	NA	6317	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.025000	0.527363	
mm_19609.1	chr2	102746615	102746815	-	1	NA	NA	NA	40277	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.015000	0.512438	
mm_37882.1	chr4	132422468	132422668	-	1	NA	NA	NA	-122	NM_175306	100169	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0.090000	0.656716	-88(CCGTTTATATGC,-,0.00)
mm_18176.1	chr2	45110125	45110325	-	1	NA	NA	NA	52	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.115000	0.726368	
mm_17632.1	chr2	31053502	31053702	-	1	NA	NA	NA	42898	NM_001177650	14269	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.025000	0.477612	
mm_53832.1	chr6	148109329	148109529	+	1	NA	NA	NA	62013	NM_178797	330450	Mm.447274	NM_178797	ENSMUSG00000030303	Far2	A230046P18|AW048109|BC055759|Mlstd1	fatty acyl CoA reductase 2	protein-coding	0.020000	0.537313	
mm_170739.1	chr2	154892595	154892795	-	1	NA	NA	NA	211	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.075000	0.621891	
mm_52576.1	chr6	116354770	116354970	+	1	NA	NA	NA	16848	NM_027920	71779	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	0.005000	0.432836	
mm_120370.1	chr14	64587197	64587397	+	1	NA	NA	NA	-818	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA	0.080000	0.696517	
mm_55551.1	chr6	71262146	71262346	-	1	NA	NA	NA	35	NM_001160127	12180	Mm.234274	NM_009762	ENSMUSG00000055027	Smyd1	4632404M21Rik|Bop|C78565|Zmynd18	SET and MYND domain containing 1	protein-coding	0.025000	0.547264	-66(CCATTTATAGTC,+,0.00)
mm_68303.1	chr7	105746417	105746617	-	1	NA	NA	NA	-2179	NM_020024	24075	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	0.010000	0.472637	
mm_107141.1	chr12	21417175	21417375	+	1	NA	NA	NA	161	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.150000	0.751244	
mm_23505.1	chr3	60528661	60528861	+	1	NA	NA	NA	27582	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.015000	0.467662	
mm_49897.1	chr6	38918995	38919195	+	1	NA	NA	NA	109	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.010000	0.507463	-12(TCCTATAAGGGC,+,0.00)
mm_74875.1	chr8	25038865	25039065	-	1	NA	NA	NA	-3	NM_001081187	330723	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0.020000	0.552239	11(ACCTTTATAAAG,-,0.00),13(CTTTATAAAGTC,+,0.00)
mm_166657.1	chr6	87533219	87533419	-	1	NA	NA	NA	-60	NM_001286610	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.010000	0.368159	
mm_152609.1	chr19	11869021	11869221	-	1	NA	NA	NA	2093	NM_001011775	257938	Mm.377309	NM_001011775	ENSMUSG00000067545	Olfr1419	MOR266-10	olfactory receptor 1419	protein-coding	0.050000	0.587065	
mm_48438.1	chr5	140623388	140623588	-	1	NA	NA	NA	16147	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.050000	0.651741	
mm_122065.1	chr14	30469791	30469991	-	1	NA	NA	NA	-9674	NM_133761	75901	Mm.28733	NM_133761	ENSMUSG00000021962	Dcp1a	1110066A22Rik|4930568L04Rik|AU019772|D14Ertd817e|Mitc1|SMIF	decapping mRNA 1A	protein-coding	0.025000	0.452736	
mm_123749.1	chr14	70192683	70192883	-	1	NA	NA	NA	-537	NM_001271409	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.005000	0.552239	
mm_14810.1	chr2	145934707	145934907	+	1	NA	NA	NA	23	NM_175280	78774	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	0.095000	0.636816	
mm_21716.1	chr2	164608811	164609011	-	1	NA	NA	NA	4475	NM_001276432	277343	Mm.383292	NM_001080550	ENSMUSG00000070533	Wfdc8	Gm706	WAP four-disulfide core domain 8	protein-coding	0.030000	0.567164	
mm_22628.1	chr3	14766468	14766668	+	1	NA	NA	NA	11892	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.010000	0.562189	
mm_63758.1	chr7	131110912	131111112	+	1	NA	NA	NA	35271	NM_173409	233918	Mm.78341	NM_173409	ENSMUSG00000013668	4933402N03Rik	4930412O05	RIKEN cDNA 4933402N03 gene	protein-coding	0.025000	0.502488	
mm_16589.1	chr2	4141037	4141237	-	1	NA	NA	NA	4	NR_040500	73489	Mm.488103	NR_040500	ENSMUSG00000084859	1700080N15Rik	4933408D14Rik	RIKEN cDNA 1700080N15 gene	ncRNA	0.000000	0.507463	
mm_62230.1	chr7	98539299	98539499	+	1	NA	NA	NA	45177	NM_001113379	434215	Mm.323057	NM_001113379	ENSMUSG00000090958	Lrrc32	AI426318|D11S833Eh|D7H11S833E|EG434215|Garp	leucine rich repeat containing 32	protein-coding	0.000000	0.407960	
mm_31532.1	chr4	55349961	55350161	+	1	NA	NA	NA	19	NM_009011	19359	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	0.100000	0.686567	
mm_51707.1	chr6	86668785	86668985	+	1	NA	NA	NA	274	NM_010751	17119	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.135000	0.781095	
mm_169604.1	chr15	36657668	36657868	-	1	NA	NA	NA	-48795	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.005000	0.547264	
mm_58058.1	chr6	136857564	136857764	-	1	NA	NA	NA	-64	NM_026639	109978	Mm.31840	NM_026639	ENSMUSG00000030217	Art4	4432404K01Rik|ARTC4|DO|DOK1	ADP-ribosyltransferase 4	protein-coding	0.025000	0.567164	
mm_35359.1	chr4	32351336	32351536	-	1	NA	NA	NA	-65999	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.040000	0.537313	33(AGCTATAAATGG,-,0.00)
mm_53803.1	chr6	146861702	146861902	+	1	NA	NA	NA	11692	NM_027059	69371	Mm.252733	NM_027059	ENSMUSG00000030292	Smco2	1700023A16Rik	single-pass membrane protein with coiled-coil domains 2	protein-coding	0.025000	0.557214	
mm_105856.1	chr11	113751218	113751418	-	1	NA	NA	NA	-158	NM_020006	56699	Mm.293378	NM_020006	ENSMUSG00000041598	Cdc42ep4	1500041M20Rik|Borg4|CEP4	CDC42 effector protein (Rho GTPase binding) 4	protein-coding	0.085000	0.636816	-62(AGGTTTTAAAGG,-,0.00),-60(GTTTTAAAGGTC,+,0.00)
mm_39525.1	chr5	21266091	21266291	+	1	NA	NA	NA	79924	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.005000	0.482587	
mm_78177.1	chr9	21184022	21184222	+	1	NA	NA	NA	21	NM_001310750	18577	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.070000	0.696517	
mm_38702.1	chr4	145215024	145215224	-	1	NA	NA	NA	-20119	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.010000	0.577114	
mm_157545.1	chrX	51205925	51206125	-	1	NA	NA	NA	-35	NM_134163	171170	Mm.295324	NM_134163	ENSMUSG00000036109	Mbnl3	A530038J18Rik|AI661274|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL	muscleblind-like 3 (Drosophila)	protein-coding	0.085000	0.631841	
mm_35327.1	chr4	26331945	26332145	-	1	NA	NA	NA	14607	NM_172865	242362	Mm.245602	NM_172865	ENSMUSG00000040520	Manea	4932703L02Rik	mannosidase, endo-alpha	protein-coding	0.000000	0.273632	
mm_20890.1	chr2	148871934	148872134	-	1	NA	NA	NA	3478	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.010000	0.472637	
mm_121748.1	chr14	18893591	18893791	-	1	NA	NA	NA	-64	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0.220000	0.830846	
mm_70632.1	chr8	13780696	13780896	+	1	NA	NA	NA	-4819	NM_025924	67031	Mm.44858	NM_025924	ENSMUSG00000038398	Upf3a	2600001C03Rik|4930546M19Rik|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding	0.005000	0.512438	
mm_1264.1	chr1	63177653	63177853	+	1	NA	NA	NA	922	NM_018796	55949	Mm.2718	NM_018796	ENSMUSG00000025967	Eef1b2	2810017J07Rik|Eef1b	eukaryotic translation elongation factor 1 beta 2	protein-coding	0.020000	0.457711	-41(TTCTTTTAAAGG,-,0.00),-40(TCTTTTAAAGGT,+,0.00),-39(CTTTTAAAGGTC,+,0.00)
mm_169824.1	chr16	22910901	22911101	-	1	NA	NA	NA	-7381	NM_001083905	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.000000	0.472637	-61(GTTTTAATAGGC,+,0.00)
mm_131890.1	chr16	23226248	23226448	+	1	NA	NA	NA	327	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.025000	0.502488	
mm_22252.1	chr2	174853191	174853391	-	1	NA	NA	NA	92672	NM_007903	13616	Mm.9478	NM_007903	ENSMUSG00000027524	Edn3	ET-3|PPET3|ls|tmgc48	endothelin 3	protein-coding	0.030000	0.517413	
mm_58036.1	chr6	136781721	136781921	-	1	NA	NA	NA	-79	NM_001127318	14917	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	0.020000	0.487562	
mm_163265.1	chr11	114675404	114675604	+	1	NA	NA	NA	36	NM_053273	117160	Mm.271934	NM_053273	ENSMUSG00000034714	Ttyh2	1110001A03Rik	tweety family member 2	protein-coding	0.100000	0.696517	
mm_122310.1	chr14	36906210	36906410	-	1	NA	NA	NA	13225	NM_001347503	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.020000	0.537313	
mm_170431.1	chr18	77038616	77038816	+	1	NA	NA	NA	8580	NM_027721	71206	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	0.010000	0.482587	
mm_91825.1	chr10	56228566	56228766	-	1	NA	NA	NA	23	NM_001033385	544696	Mm.411188	NM_001033385	ENSMUSG00000038122	Tbc1d32	Bromi|D630037F22Rik|b2b2284Clo	TBC1 domain family, member 32	protein-coding	0.105000	0.646766	
mm_80706.1	chr9	92249965	92250165	+	1	NA	NA	NA	-129	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.020000	0.467662	
mm_21946.1	chr2	167062482	167062682	-	1	NA	NA	NA	-352	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.120000	0.726368	
mm_97356.1	chr11	77498087	77498287	+	1	NA	NA	NA	4775	NM_001004144	216963	Mm.290182	NM_001004144	ENSMUSG00000011877	Git1	Cat-1|p95Cat	G protein-coupled receptor kinase-interactor 1	protein-coding	0.010000	0.587065	
mm_113950.1	chr13	50950085	50950285	+	1	NA	NA	NA	150542	NR_029463	77428	Mm.405630	NR_029463		9430083A17Rik	-	RIKEN cDNA 9430083A17 gene	ncRNA	0.010000	0.467662	
mm_42622.1	chr5	118154850	118155050	+	1	NA	NA	NA	508	NM_172721	231672	Mm.221769	NM_172721	ENSMUSG00000032867	Fbxw8	4930438M06Rik|FBW6|FBW8|FBXO29|Fbx29	F-box and WD-40 domain protein 8	protein-coding	0.040000	0.537313	
mm_94729.1	chr11	20740609	20740809	+	1	NA	NA	NA	847	NM_001290545	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.045000	0.507463	
mm_131002.1	chr15	103537927	103538127	-	1	NA	NA	NA	-35	NM_021391	58200	Mm.143788	NM_021391	ENSMUSG00000022490	Ppp1r1a	0610038N18Rik|I-1	protein phosphatase 1, regulatory (inhibitor) subunit 1A	protein-coding	0.100000	0.726368	
mm_61275.1	chr7	66743520	66743720	+	1	NA	NA	NA	116	NM_001164201	545975	Mm.380104	NM_001164201	ENSMUSG00000030510	Cers3	4930550L11Rik|Gm488|Lass3|T3L	ceramide synthase 3	protein-coding	0.025000	0.522388	
mm_100000.1	chr11	114851309	114851509	+	1	NA	NA	NA	-123	NM_001110337	70355	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.090000	0.631841	
mm_52926.1	chr6	122922508	122922708	+	1	NA	NA	NA	760	NM_199311	269799	Mm.297275	NM_199311	ENSMUSG00000049037	Clec4a1	BC049354|Dcir4	C-type lectin domain family 4, member a1	protein-coding	0.005000	0.388060	
mm_10221.1	chr2	5954501	5954701	+	1	NA	NA	NA	3132	NM_001081132	326622	Mm.31102	NM_001081132	ENSMUSG00000043241	Upf2	-	UPF2 regulator of nonsense transcripts homolog (yeast)	protein-coding	0.005000	0.393035	
mm_84646.1	chr9	71485782	71485982	-	1	NA	NA	NA	101	NM_178602	28015	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	0.140000	0.716418	
mm_17468.1	chr2	28559276	28559476	-	1	NA	NA	NA	4027	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.020000	0.562189	
mm_60659.1	chr7	44943110	44943310	+	1	NA	NA	NA	-30	NM_001077591	22116	Mm.84502	NM_011651	ENSMUSG00000059891	Tsks	Stk22s1|Tssks1	testis-specific serine kinase substrate	protein-coding	0.020000	0.641791	
mm_60888.1	chr7	46396580	46396780	+	1	NA	NA	NA	212	NM_001112739	16502	Mm.249386	NM_008421	ENSMUSG00000058975	Kcnc1	C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw	potassium voltage gated channel, Shaw-related subfamily, member 1	protein-coding	0.135000	0.791045	
mm_68871.1	chr7	126446810	126447010	-	1	NA	NA	NA	16163	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.020000	0.557214	
mm_98636.1	chr11	96124668	96124868	+	1	NA	NA	NA	-9018	NM_172799	237930	Mm.249912	NM_172799	ENSMUSG00000038756	Ttll6	4932418K24Rik|D11Moh43e|D11Moh44e|t8130b59	tubulin tyrosine ligase-like family, member 6	protein-coding	0.035000	0.587065	
mm_36919.1	chr4	108118413	108118613	-	1	NA	NA	NA	34	NM_011327	20280	Mm.379011	NM_011327	ENSMUSG00000028603	Scp2	AA409774|AA409893|C76618|C79031|NSL-TP|SCP-2|SCP-X|SCPX|ns-LTP	sterol carrier protein 2, liver	protein-coding	0.095000	0.651741	
mm_105839.1	chr11	113683197	113683397	-	1	NA	NA	NA	854	NM_138598	28081	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0.025000	0.592040	
mm_49348.1	chr6	21986065	21986265	+	1	NA	NA	NA	255	NM_001081351	214642	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.015000	0.398010	
mm_103353.1	chr11	74831901	74832101	-	1	NA	NA	NA	1077	NM_010813	17428	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.080000	0.656716	
mm_159518.1	chr4	60662213	60662413	-	1	NA	NA	NA	52	NM_001134644	100048885	Mm.422695	NM_001134644		Gm2083	-	major urinary protein LOC100048885	protein-coding	0.020000	0.497512	-87(GAGTATATAAGG,-,0.00)
mm_44908.1	chr5	35663494	35663694	-	1	NA	NA	NA	16186	NM_001042615	78558	Mm.274255	NM_030127	ENSMUSG00000029096	Htra3	2210021K23Rik|9530081K03Rik|Prsp|Tasp	HtrA serine peptidase 3	protein-coding	0.005000	0.442786	
mm_70123.1	chr7	143053319	143053519	-	1	NA	NA	NA	267	NR_110355	97423	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	0.055000	0.626866	
mm_93933.1	chr10	127176915	127177115	-	1	NA	NA	NA	3630	NM_177615	216441	Mm.248373	NM_177615	ENSMUSG00000040441	Slc26a10	C78409|D630010I07	solute carrier family 26, member 10	protein-coding	0.025000	0.616915	
mm_25772.1	chr3	126596235	126596435	+	1	NA	NA	NA	-616	NM_001293663	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.040000	0.552239	
mm_104009.1	chr11	85139811	85140011	-	1	NA	NA	NA	44	NM_001029934	237898	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0.110000	0.746269	
mm_130116.1	chr15	89476972	89477172	-	1	NA	NA	NA	352	NM_009713	11883	Mm.620	NM_009713	ENSMUSG00000022620	Arsa	AS-A|ASA|AW212749|As-2|As2|TISP73	arylsulfatase A	protein-coding	0.010000	0.427861	
mm_121624.1	chr14	8309677	8309877	-	1	NA	NA	NA	-1	NM_183187	268709	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0.025000	0.517413	
mm_30148.1	chr3	142545934	142546134	-	1	NA	NA	NA	-14018	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.005000	0.492537	
mm_12585.1	chr2	73452703	73452903	+	1	NA	NA	NA	1086	NM_001289722	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.015000	0.482587	
mm_75700.1	chr8	68212160	68212360	-	1	NA	NA	NA	-64268	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.000000	0.442786	
mm_123559.1	chr14	66868031	66868231	-	1	NA	NA	NA	469	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.055000	0.537313	
mm_119059.1	chr14	30716296	30716496	+	1	NA	NA	NA	781	NM_001166532	54650	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.155000	0.800995	
mm_170979.1	chr2	70825222	70825422	-	1	NA	NA	NA	158	NM_172664	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.100000	0.696517	
mm_103708.1	chr11	79516624	79516824	-	1	NA	NA	NA	7038	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.020000	0.378109	
mm_55055.1	chr6	49047246	49047446	-	1	NA	NA	NA	10828	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.030000	0.452736	
mm_133349.1	chr16	84301656	84301856	+	1	NA	NA	NA	-69387	NR_040567	75247	Mm.417813	NR_040567		4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0.000000	0.452736	
mm_59535.1	chr7	27731517	27731717	+	1	NA	NA	NA	208	NM_009560	22718	Mm.66913	NM_009560	ENSMUSG00000037640	Zfp60	6330516O17Rik|AI426106|AI449354|Mfg-3|Mfg3	zinc finger protein 60	protein-coding	0.070000	0.562189	
mm_73859.1	chr8	118283629	118283829	+	1	NA	NA	NA	118	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.065000	0.562189	
mm_37107.1	chr4	116638989	116639189	-	1	NA	NA	NA	-11138	NM_016777	50927	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.020000	0.537313	
mm_103190.1	chr11	70615581	70615781	-	1	NA	NA	NA	-213	NM_001145537	668433	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.060000	0.537313	
mm_110831.1	chr12	72664646	72664846	-	1	NA	NA	NA	82	NM_025522	66375	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.090000	0.661692	
mm_125205.1	chr15	33083154	33083354	+	1	NA	NA	NA	125	NM_176073	54381	Mm.158251	NM_018755	ENSMUSG00000039007	Cpq	1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp	carboxypeptidase Q	protein-coding	0.050000	0.691542	
mm_24706.1	chr3	95160871	95161071	+	1	NA	NA	NA	551	NR_073551	20360	Mm.23662	NM_011351	ENSMUSG00000038777	Sema6c	Semay|mKIAA1869	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C	protein-coding	0.045000	0.542289	
mm_127525.1	chr15	102073825	102074025	+	1	NA	NA	NA	152	NM_145625	75705	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0.095000	0.661692	
mm_95822.1	chr11	55395337	55395537	+	1	NA	NA	NA	24643	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.010000	0.432836	
mm_147436.1	chr18	46503928	46504128	-	1	NA	NA	NA	21943	NM_173423	240263	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.025000	0.457711	
mm_140238.1	chr17	84119816	84120016	+	1	NA	NA	NA	41256	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.005000	0.547264	
mm_44431.1	chr5	21002741	21002941	-	1	NA	NA	NA	-51019	NM_001080977	242860	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0.020000	0.457711	
mm_56919.1	chr6	119388927	119389127	-	1	NA	NA	NA	28456	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.065000	0.492537	
mm_130480.1	chr15	98740196	98740396	-	1	NA	NA	NA	-12098	NM_024169	66120	Mm.30729	NM_024169	ENSMUSG00000003355	Fkbp11	1110002O23Rik|FKBP-11	FK506 binding protein 11	protein-coding	0.015000	0.562189	
mm_157869.1	chrX	75416211	75416411	-	1	NA	NA	NA	273	NM_010839	105886298	Mm.16366	NM_010839	ENSMUSG00000090110	Cmc4	Mtcp1nb|p8MTCP1	C-x(9)-C motif containing 4	protein-coding	0.070000	0.527363	
mm_84043.1	chr9	57836659	57836859	-	1	NA	NA	NA	-2525	NM_019689	56380	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0.100000	0.756219	
mm_31064.1	chr4	41316720	41316920	+	1	NA	NA	NA	-1919	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.005000	0.537313	
mm_116256.1	chr13	34077904	34078104	-	1	NA	NA	NA	4	NM_009450	22151	Mm.422827	NM_009450	ENSMUSG00000058672	Tubb2a	M(beta)2|Tubb2	tubulin, beta 2A class IIA	protein-coding	0.080000	0.671642	-36(GGGTATAAAAGG,-,0.00)
mm_50957.1	chr6	58862795	58862995	+	1	NA	NA	NA	29195	NM_028705	73998	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0.020000	0.427861	
mm_116353.1	chr13	38967033	38967233	-	1	NA	NA	NA	-6258	NM_001170431	108652	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	0.000000	0.606965	
mm_78895.1	chr9	44630834	44631034	+	1	NA	NA	NA	26042	NM_181324	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.005000	0.333333	
mm_153684.1	chr19	44396626	44396826	-	1	NA	NA	NA	10983	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.507463	
mm_21939.1	chr2	167060056	167060256	-	1	NA	NA	NA	-2778	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.030000	0.492537	
mm_42918.1	chr5	122718217	122718417	+	1	NA	NA	NA	10773	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.015000	0.532338	-61(TTCTTTATAGCC,+,0.00)
mm_130402.1	chr15	97976049	97976249	-	1	NA	NA	NA	11920	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.030000	0.532338	
mm_163808.1	chr14	19416043	19416243	-	1	NA	NA	NA	186444	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.015000	0.328358	
mm_106922.1	chr12	8332108	8332308	+	1	NA	NA	NA	18775	NM_021429	58240	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.015000	0.522388	
mm_23726.1	chr3	69016600	69016800	+	1	NA	NA	NA	6798	NR_029735	723949		NR_029735	ENSMUSG00000065606	Mir16-2	Mirn16-2|mir-16-2	microRNA 16-2	ncRNA	0.000000	0.323383	-32(TGGTAGAAAAGG,-,0.00)
mm_68935.1	chr7	126501915	126502115	-	1	NA	NA	NA	410	NM_001347658	233871	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.075000	0.621891	
mm_79513.1	chr9	57521100	57521300	+	1	NA	NA	NA	-32	NM_007747	12858	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit Va	protein-coding	0.160000	0.736318	
mm_97831.1	chr11	83064369	83064569	+	1	NA	NA	NA	-643	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.000000	0.502488	
mm_68883.1	chr7	126447833	126448033	-	1	NA	NA	NA	15140	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.015000	0.577114	
mm_75786.1	chr8	70095053	70095253	-	1	NA	NA	NA	7433	NR_106033	102465646		NR_106033	ENSMUSG00000099042	Mir7066	Gm27290|mmu-mir-7066	microRNA 7066	ncRNA	0.005000	0.482587	
mm_139243.1	chr17	47733707	47733907	+	1	NA	NA	NA	-3230	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.020000	0.537313	
mm_89542.1	chr10	94575014	94575214	+	1	NA	NA	NA	-143	NM_001168684	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.015000	0.507463	
mm_51877.1	chr6	90559303	90559503	+	1	NA	NA	NA	8555	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.025000	0.597015	
mm_4750.1	chr1	182255254	182255454	+	1	NA	NA	NA	27405	NM_007853	13244	Mm.29648	NM_007853	ENSMUSG00000038633	Degs1	AA536663|Degs|Des1|Mdes	delta(4)-desaturase, sphingolipid 1	protein-coding	0.030000	0.592040	-32(CCTCATAGAGGG,+,0.00)
mm_152264.1	chr19	8798327	8798527	-	1	NA	NA	NA	130	NM_026329	67710	Mm.22117	NM_026329	ENSMUSG00000071662	Polr2g	2410046K11Rik|A230108L04Rik|C76415|RBP7|Rpo2-7l	polymerase (RNA) II (DNA directed) polypeptide G	protein-coding	0.045000	0.597015	
mm_121990.1	chr14	26442748	26442948	-	1	NA	NA	NA	85301	NR_038005	71106	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.010000	0.407960	
mm_112275.1	chr12	114288535	114288735	-	1	NA	NA	NA	180831	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.000000	0.442786	
mm_70295.1	chr8	3676425	3676625	+	1	NA	NA	NA	48	NM_025701	66682	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	0.115000	0.641791	
mm_125804.1	chr15	74918661	74918861	+	1	NA	NA	NA	-36290	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.020000	0.522388	
mm_130176.1	chr15	93336851	93337051	-	1	NA	NA	NA	-16	NM_024189	67057	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0.190000	0.800995	
mm_157907.1	chrX	78091271	78091471	-	1	NA	NA	NA	3	NM_008754	18249	Mm.430771	NM_008754	ENSMUSG00000067684	Obp1a	OBP-1a|OBP5	odorant binding protein IA	protein-coding	0.005000	0.383085	
mm_73475.1	chr8	106870734	106870934	+	1	NA	NA	NA	-2	NM_001331048	15118	Mm.56986	NM_008217	ENSMUSG00000031910	Has3	-	hyaluronan synthase 3	protein-coding	0.110000	0.716418	
mm_26184.1	chr3	138342192	138342392	+	1	NA	NA	NA	29006	NM_026945	69117	Mm.46265	NM_026945	ENSMUSG00000053054	Adh6a	1810009C16Rik|Adh5a	alcohol dehydrogenase 6A (class V)	protein-coding	0.025000	0.467662	
mm_130617.1	chr15	99972626	99972826	-	1	NA	NA	NA	-54	NM_001024526	207214	Mm.28811	NM_001024526	ENSMUSG00000023025	Larp4	DXErtd793|DXErtd793e	La ribonucleoprotein domain family, member 4	protein-coding	0.120000	0.706468	
mm_141358.1	chr17	28770144	28770344	-	1	NA	NA	NA	927	NM_011950	26415	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.035000	0.636816	
mm_67998.1	chr7	100930868	100931068	-	1	NA	NA	NA	1193	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.070000	0.681592	
mm_932.1	chr1	55450104	55450304	+	1	NA	NA	NA	44258	NM_001114663	227120	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.000000	0.437811	
mm_100385.1	chr11	119316962	119317162	+	1	NA	NA	NA	2275	NM_130886	170720	Mm.130832	NM_130886	ENSMUSG00000013483	Card14	Bimp2|CARMA2	caspase recruitment domain family, member 14	protein-coding	0.025000	0.552239	
mm_110138.1	chr12	26447833	26448033	-	1	NA	NA	NA	8519	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.402985	
mm_49235.1	chr6	17281122	17281322	+	1	NA	NA	NA	37	NM_016900	12390	Mm.396075	NM_016900	ENSMUSG00000000058	Cav2	AI447843	caveolin 2	protein-coding	0.095000	0.766169	
mm_16441.1	chr2	180398359	180398559	+	1	NA	NA	NA	80	NR_029901	723954		NR_029901	ENSMUSG00000065460	Mir133a-2	Mirn133a-2|mir-133a-2	microRNA 133a-2	ncRNA	0.020000	0.547264	
mm_6426.1	chr1	73930719	73930919	-	1	NA	NA	NA	-66353	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.000000	0.512438	
mm_36869.1	chr4	107066752	107066952	-	1	NA	NA	NA	14	NM_025500	56280	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0.075000	0.592040	
mm_76040.1	chr8	77465966	77466166	-	1	NA	NA	NA	-50990	NR_028125	70345	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.010000	0.298507	
mm_94984.1	chr11	31832026	31832226	+	1	NA	NA	NA	-7579	NR_102312	414116	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.005000	0.492537	
mm_160924.1	chr11	85896719	85896919	+	1	NA	NA	NA	54	NM_172798	21387	Mm.275336	NM_011536	ENSMUSG00000000094	Tbx4	3930401C23	T-box 4	protein-coding	0.030000	0.646766	
mm_85091.1	chr9	92227154	92227354	-	1	NA	NA	NA	-22940	NM_011636	22038	Mm.421956	NM_011636	ENSMUSG00000032369	Plscr1	MmTRA1a|MmTRA1b|Nor1|Tra1|Tra1a|Tra1b|Tras1|Tras2	phospholipid scramblase 1	protein-coding	0.000000	0.482587	
mm_167829.1	chr9	124423608	124423808	-	1	NA	NA	NA	-79	NR_102721	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.065000	0.587065	
mm_159165.1	chr2	92221362	92221562	+	1	NA	NA	NA	-100	NM_001109690	192285	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|Bhc|Bhc80|D030065N23Rik|PFTF1	PHD finger protein 21A	protein-coding	0.010000	0.348259	
mm_74928.1	chr8	25601955	25602155	-	1	NA	NA	NA	-229	NM_001001735	234135	Mm.217337	NM_001001735	ENSMUSG00000054823	Whsc1l1	6720429E03|A530023P05|AI528490|NSD3|WHISTLE	Wolf-Hirschhorn syndrome candidate 1-like 1 (human)	protein-coding	0.100000	0.646766	
mm_36158.1	chr4	59914755	59914955	-	1	NA	NA	NA	201	NM_021053	30936	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0.035000	0.631841	
mm_126795.1	chr15	86415336	86415536	+	1	NA	NA	NA	200977	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.015000	0.527363	
mm_89296.1	chr10	87913555	87913755	+	1	NA	NA	NA	52544	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.015000	0.512438	
mm_68082.1	chr7	101870597	101870797	-	1	NA	NA	NA	91	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.010000	0.522388	
mm_127523.1	chr15	102073549	102073749	+	1	NA	NA	NA	-124	NM_145625	75705	Mm.290022	NM_145625	ENSMUSG00000058655	Eif4b	2310046H11Rik|AL024095|C85189|Eif4a2	eukaryotic translation initiation factor 4B	protein-coding	0.105000	0.641791	
mm_141114.1	chr17	26087307	26087507	-	1	NA	NA	NA	2757	NM_011933	26378	Mm.292869	NM_011933	ENSMUSG00000036775	Decr2	-	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	protein-coding	0.020000	0.512438	
mm_74857.1	chr8	24814000	24814200	-	1	NA	NA	NA	10269	NM_001272058	11499	Mm.143889	NM_007401	ENSMUSG00000031554	Adam5	tMDC II|tMDCII	a disintegrin and metallopeptidase domain 5	protein-coding	0.005000	0.527363	49(TGCTTGAAAAGG,-,0.00)
mm_74542.1	chr8	9976248	9976448	-	1	NA	NA	NA	-25	NM_176953	319583	Mm.80584	NM_176953	ENSMUSG00000049717	Lig4	5830471N16Rik|tiny	ligase IV, DNA, ATP-dependent	protein-coding	0.080000	0.676617	-86(TGCCTTTAAAAG,-,0.00),-85(GCCTTTAAAAGC,+,0.00),-85(GCCTTTAAAAGC,-,0.00),-84(CCTTTAAAAGCC,+,0.00)
mm_23744.1	chr3	69343784	69343984	+	1	NA	NA	NA	26966	NM_178726	242083	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	0.010000	0.358209	
mm_22489.1	chr3	5860249	5860449	+	1	NA	NA	NA	-284101	NM_001163305	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.060000	0.407960	
mm_67580.1	chr7	82771598	82771798	-	1	NA	NA	NA	-16054	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.065000	0.666667	
mm_20940.1	chr2	151039283	151039483	-	1	NA	NA	NA	-4	NM_026086	67311	Mm.480682	NM_026086	ENSMUSG00000053916	Nanp	1600031M04Rik|Hdhd4	N-acetylneuraminic acid phosphatase	protein-coding	0.115000	0.641791	
mm_46443.1	chr5	105101521	105101721	-	1	NA	NA	NA	8671	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.000000	0.393035	
mm_95672.1	chr11	54080499	54080699	+	1	NA	NA	NA	-11582	NM_019417	30794	Mm.21830	NM_019417	ENSMUSG00000020388	Pdlim4	Ril	PDZ and LIM domain 4	protein-coding	0.020000	0.597015	
mm_45254.1	chr5	62766100	62766300	-	1	NA	NA	NA	-23	NM_178407	212285	Mm.244403	NM_178407	ENSMUSG00000037999	Arap2	Centd1|Gm148|mKIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	protein-coding	0.185000	0.855721	
mm_83288.1	chr9	43107040	43107240	-	1	NA	NA	NA	-1422	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0.030000	0.388060	85(TTGTATAAAAGG,-,0.00)
mm_58988.1	chr7	19092876	19093076	+	1	NA	NA	NA	-1568	NM_011383	20475	Mm.3410	NM_011383	ENSMUSG00000040841	Six5	Dmahp|MDMAHP|TrexBF	sine oculis-related homeobox 5	protein-coding	0.045000	0.646766	
mm_39508.1	chr5	21220550	21220750	+	1	NA	NA	NA	34383	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.020000	0.542289	
mm_18050.1	chr2	39190574	39190774	-	1	NA	NA	NA	56	NM_178778	320271	Mm.204836	NM_178778	ENSMUSG00000035236	Scai	9330112M16|A930041I02Rik|AI662729	suppressor of cancer cell invasion	protein-coding	0.105000	0.751244	
mm_91111.1	chr10	19185792	19185992	-	1	NA	NA	NA	18654	NR_038022	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.030000	0.492537	
mm_82286.1	chr9	7604029	7604229	-	1	NA	NA	NA	-24102	NM_013903	30800	Mm.390121	NM_013903	ENSMUSG00000018620	Mmp20	-	matrix metallopeptidase 20 (enamelysin)	protein-coding	0.025000	0.492537	
mm_71931.1	chr8	70282911	70283111	+	1	NA	NA	NA	12	NM_001146153	26558	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	0.145000	0.786070	
mm_135052.1	chr16	33786894	33787094	-	1	NA	NA	NA	-7043	NM_010739	17063	Mm.3177	NM_010739	ENSMUSG00000022824	Muc13	114/A10|14/A10|AI159736|Lrrp|Ly64|NJ-1	mucin 13, epithelial transmembrane	protein-coding	0.000000	0.457711	
mm_133778.1	chr16	94969115	94969315	+	1	NA	NA	NA	28481	NM_001025584	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.010000	0.472637	
mm_117856.1	chr13	98815061	98815261	-	1	NA	NA	NA	288	NM_172591	218503	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.165000	0.741294	
mm_110643.1	chr12	58268956	58269156	-	1	NA	NA	NA	202	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	0.025000	0.577114	
mm_142505.1	chr17	46096541	46096741	-	1	NA	NA	NA	-14363	NM_026768	68565	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	0.020000	0.582090	
mm_146761.1	chr18	16808976	16809176	-	1	NA	NA	NA	170	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.095000	0.726368	
mm_33042.1	chr4	122936426	122936626	+	1	NA	NA	NA	24662	NM_029662	76574	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.000000	0.402985	-83(GTGCATATAAAG,-,0.00),-81(GCATATAAAGTG,+,0.00)
mm_93488.1	chr10	111997052	111997252	-	1	NA	NA	NA	112	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.015000	0.492537	
mm_65950.1	chr7	30420269	30420469	-	1	NA	NA	NA	-515	NM_011827	23900	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	0.015000	0.512438	
mm_8873.1	chr1	162859846	162860046	-	1	NA	NA	NA	54	NM_001330291	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.015000	0.587065	
mm_172232.1	chr6	67746585	67746785	-	1	NA	NA	NA	-180986	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.010000	0.502488	
mm_117885.1	chr13	99412728	99412928	-	1	NA	NA	NA	-2	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.005000	0.462687	
mm_105110.1	chr11	100970477	100970677	-	1	NA	NA	NA	40	NM_008986	19285	Mm.21864	NM_008986	ENSMUSG00000004044	Ptrf	2310075E07Rik|AW546441|Cav-p60|Cavin	polymerase I and transcript release factor	protein-coding	0.100000	0.676617	
mm_12670.1	chr2	75720849	75721049	+	1	NA	NA	NA	-16286	NM_010902	18024	Mm.1025	NM_010902	ENSMUSG00000015839	Nfe2l2	Nrf2	nuclear factor, erythroid derived 2, like 2	protein-coding	0.005000	0.407960	
mm_133181.1	chr16	72636800	72637000	+	1	NA	NA	NA	-26249	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.005000	0.427861	
mm_157959.1	chrX	88115554	88115754	-	1	NA	NA	NA	-31	NM_001160403	331461	Mm.121680	NM_001160403	ENSMUSG00000052372	Il1rapl1	6330532G10Rik|C030039N24|IL1R8|IL1RAPL|MRX34|OPHN4|TIGIRR-2	interleukin 1 receptor accessory protein-like 1	protein-coding	0.020000	0.477612	
mm_102140.1	chr11	53586815	53587015	-	1	NA	NA	NA	19546	NM_001290806	16568	Mm.88694	NM_008443	ENSMUSG00000018395	Kif3a	Kif3|Kifl|Kns3	kinesin family member 3A	protein-coding	0.005000	0.457711	
mm_154506.1	chrM	11923	12123	-	1	NA	NA	NA	NA	NA									0.005000	0.313433	
mm_153415.1	chr19	40588371	40588571	-	1	NA	NA	NA	-8	NM_153554	56454	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	0.130000	0.681592	
mm_23610.1	chr3	65527911	65528111	+	1	NA	NA	NA	-436	NM_178892	99929	Mm.246398	NM_178892	ENSMUSG00000034640	Tiparp	ARTD14|AW558171|PARP7	TCDD-inducible poly(ADP-ribose) polymerase	protein-coding	0.110000	0.671642	
mm_38664.1	chr4	144438687	144438887	-	1	NA	NA	NA	-15	NM_027056	69364	Mm.158267	NM_027056	ENSMUSG00000028589	1700012P22Rik	-	RIKEN cDNA 1700012P22 gene	protein-coding	0.000000	0.482587	
mm_25559.1	chr3	116534665	116534865	+	1	NA	NA	NA	21686	NM_010022	13171	Mm.3636	NM_010022	ENSMUSG00000000340	Dbt	D3Wsu60e	dihydrolipoamide branched chain transacylase E2	protein-coding	0.025000	0.497512	
mm_7881.1	chr1	133020162	133020362	-	1	NA	NA	NA	5154	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	0.000000	0.407960	
mm_167306.1	chr8	60522361	60522561	+	1	NA	NA	NA	16337	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.000000	0.452736	
mm_135798.1	chr16	57211062	57211262	-	1	NA	NA	NA	20304	NM_026254	67581	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.005000	0.417910	
mm_158027.1	chrX	96293339	96293539	-	1	NA	NA	NA	-1	NM_177789	278180	Mm.26781	NM_177789	ENSMUSG00000044206	Vsig4	A530061A11|BC025105|CRIg|Z39IG	V-set and immunoglobulin domain containing 4	protein-coding	0.005000	0.457711	
mm_3187.1	chr1	135799357	135799557	+	1	NA	NA	NA	36	NM_021467	21952	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	0.020000	0.562189	
mm_83110.1	chr9	40376030	40376230	-	1	NA	NA	NA	42658	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.010000	0.542289	
mm_100678.1	chr11	3452267	3452467	-	1	NA	NA	NA	-70	NR_028317	71523	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	0.080000	0.636816	
mm_1814.1	chr1	82316499	82316699	+	1	NA	NA	NA	20	NM_029777	76867	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	0.120000	0.621891	
mm_57999.1	chr6	136173188	136173388	-	1	NA	NA	NA	223	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.050000	0.611940	
mm_133831.1	chr16	95900435	95900635	+	1	NA	NA	NA	-1822	NR_040485	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.035000	0.532338	
mm_147764.1	chr18	61375113	61375313	-	1	NA	NA	NA	25218	NM_133249	170826	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0.000000	0.378109	
mm_45295.1	chr5	65091507	65091707	-	1	NA	NA	NA	-15961	NM_001347355	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.015000	0.402985	-83(TTTTTTAAAGTC,+,0.00)
mm_157062.1	chrX	8132795	8132995	-	1	NA	NA	NA	-37	NM_026137	73447	Mm.284162	NM_026137	ENSMUSG00000031166	Wdr13	1700060B08Rik|5730411P10Rik|DXHXS7467e|W51679|mMg21	WD repeat domain 13	protein-coding	0.040000	0.522388	-12(GTCCTTTAATGC,-,0.00),-10(CCTTTAATGCGC,+,0.00)
mm_16034.1	chr2	167661660	167661860	+	1	NA	NA	NA	-216	NM_145538	407243	Mm.4863	NM_145538	ENSMUSG00000090213	Tmem189	AI840826|Kua	transmembrane protein 189	protein-coding	0.150000	0.736318	
mm_171108.1	chr3	134880835	134881035	+	1	NA	NA	NA	51928	NM_021382	21338	Mm.103810	NM_021382	ENSMUSG00000028172	Tacr3	Nk3r|Nkr|Tac3r	tachykinin receptor 3	protein-coding	0.025000	0.522388	
mm_171344.1	chr4	106098735	106098935	+	1	NA	NA	NA	-217378	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.060000	0.562189	
mm_80326.1	chr9	75011728	75011928	+	1	NA	NA	NA	-25786	NM_001142655	59046	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	0.000000	0.388060	
mm_145998.1	chr18	68344429	68344629	+	1	NA	NA	NA	6926	NM_013596	17203	Mm.8003	NM_013596	ENSMUSG00000007480	Mc5r	-	melanocortin 5 receptor	protein-coding	0.020000	0.512438	
mm_74069.1	chr8	122431641	122431841	+	1	NA	NA	NA	1199	NM_001301284	13057	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.025000	0.557214	
mm_151129.1	chr19	48205419	48205619	+	1	NA	NA	NA	-506	NM_025696	66673	Mm.70980	NM_025696	ENSMUSG00000063434	Sorcs3	6330404A12Rik|AW045579	sortilin-related VPS10 domain containing receptor 3	protein-coding	0.085000	0.676617	
mm_143805.1	chr17	83514509	83514709	-	1	NA	NA	NA	-276	NM_001159529	20463	Mm.30072	NM_009187	ENSMUSG00000024248	Cox7a2l	COX7AR|COX7RP|EB1|SIG-81|SIG81|Silg81	cytochrome c oxidase subunit VIIa polypeptide 2-like	protein-coding	0.065000	0.646766	
mm_123178.1	chr14	57664830	57665030	-	1	NA	NA	NA	26	NM_020506	57258	Mm.202747	NM_020506	ENSMUSG00000021952	Xpo4	B430309A01Rik|mKIAA1721	exportin 4	protein-coding	0.110000	0.671642	
mm_87955.1	chr10	63182705	63182905	+	1	NA	NA	NA	21147	NM_182992	68802	Mm.259767	NM_182992	ENSMUSG00000020067	Mypn	1110056A04Rik|9830112J03|AI853556|mKIAA4170	myopalladin	protein-coding	0.020000	0.502488	-33(CCATATAAAAAC,-,0.00)
mm_120265.1	chr14	63122372	63122572	+	1	NA	NA	NA	10	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.090000	0.681592	
mm_50677.1	chr6	51544623	51544823	+	1	NA	NA	NA	200	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.010000	0.452736	
mm_120303.1	chr14	63140397	63140597	+	1	NA	NA	NA	18035	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.005000	0.353234	
mm_152723.1	chr19	18596631	18596831	-	1	NA	NA	NA	35082	NM_017375	20409	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.005000	0.233831	50(GAATATAAAAGA,-,0.00)
mm_108689.1	chr12	86894468	86894668	+	1	NA	NA	NA	-9754	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.025000	0.507463	
mm_130790.1	chr15	101676357	101676557	-	1	NA	NA	NA	3832	NM_010669	16688	Mm.441891	NM_010669	ENSMUSG00000023041	Krt6b	BB144589|Krt2-6b|mK6[b]	keratin 6B	protein-coding	0.015000	0.537313	
mm_46390.1	chr5	104021837	104022037	-	1	NA	NA	NA	-141	NM_053262	114664	Mm.46019	NM_053262	ENSMUSG00000029311	Hsd17b11	Dhrs8|Pan1b|SDR2|retSDR2	hydroxysteroid (17-beta) dehydrogenase 11	protein-coding	0.055000	0.557214	
mm_2333.1	chr1	92831640	92831840	+	1	NA	NA	NA	54	NM_016696	14733	Mm.297976	NM_016696	ENSMUSG00000034220	Gpc1	AI462976	glypican 1	protein-coding	0.180000	0.796020	
mm_51949.1	chr6	91734757	91734957	+	1	NA	NA	NA	50790	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.005000	0.412935	
mm_79355.1	chr9	54249817	54250017	+	1	NA	NA	NA	-36569	NM_177350	235379	Mm.123549	NM_177350	ENSMUSG00000046167	Gldn	CRG-L2|Clom|Colm|Crgl2|Crlg2	gliomedin	protein-coding	0.010000	0.542289	
mm_141641.1	chr17	33305755	33305955	-	1	NA	NA	NA	16311	NM_001142957	100043468	Mm.276296	NM_001142957	ENSMUSG00000096910	Zfp955b	A430003O12Rik|C430039G02Rik|C530035A18Rik|Gm4455|Zfp883b	zinc finger protein 955B	protein-coding	0.040000	0.442786	-33(ACCTATTTAAGA,-,0.00)
mm_139106.1	chr17	47313849	47314049	+	1	NA	NA	NA	-54938	NM_001146212	64657	Mm.216250	NM_183086	ENSMUSG00000034729	Mrps10	1110038B19Rik|AW743084|Rpms10	mitochondrial ribosomal protein S10	protein-coding	0.015000	0.462687	
mm_14793.1	chr2	145860783	145860983	+	1	NA	NA	NA	-42358	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.040000	0.572139	
mm_38909.1	chr4	149976666	149976866	-	1	NA	NA	NA	-21760	NM_029035	74646	Mm.30	NM_029035	ENSMUSG00000039911	Spsb1	1110014L01Rik|4930422J18Rik|AI596360|AI854583|SSB-1|SSB1	splA/ryanodine receptor domain and SOCS box containing 1	protein-coding	0.015000	0.512438	
mm_164831.1	chr18	37808637	37808837	+	1	NA	NA	NA	2327	NM_033581	93706	Mm.247203	NM_033581	ENSMUSG00000102918	Pcdhgc3	PC43|Pcdh2	protocadherin gamma subfamily C, 3	protein-coding	0.045000	0.562189	
mm_124752.1	chr15	6638888	6639088	+	1	NA	NA	NA	59141	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.015000	0.572139	
mm_171526.1	chr4	146610911	146611111	+	1	NA	NA	NA	-64138	NR_045468	67524	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	0.040000	0.517413	
mm_43760.1	chr5	140612459	140612659	+	1	NA	NA	NA	5218	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.050000	0.621891	
mm_75384.1	chr8	45410245	45410445	-	1	NA	NA	NA	194	NM_126166	142980	Mm.33874	NM_126166	ENSMUSG00000031639	Tlr3	AI957183	toll-like receptor 3	protein-coding	0.035000	0.562189	
mm_135939.1	chr16	74279540	74279740	-	1	NA	NA	NA	62427	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.010000	0.358209	
mm_130735.1	chr15	101250280	101250480	-	1	NA	NA	NA	-16466	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.025000	0.542289	
mm_164306.1	chr15	103897352	103897552	+	1	NA	NA	NA	1848	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.025000	0.417910	
mm_48741.1	chr5	147722539	147722739	-	1	NA	NA	NA	3349	NM_010228	14254	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.000000	0.417910	
mm_99218.1	chr11	101031391	101031591	+	1	NA	NA	NA	1151	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.005000	0.393035	
mm_16725.1	chr2	7395830	7396030	-	1	NA	NA	NA	70	NM_001110232	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.025000	0.412935	
mm_154873.1	chrX	20687902	20688102	+	1	NA	NA	NA	48	NM_001310456	18555	Mm.102574	NM_011049	ENSMUSG00000031065	Cdk16	Crk5|Pctaire1|Pctk1	cyclin-dependent kinase 16	protein-coding	0.020000	0.512438	
mm_34704.1	chr4	152107640	152107840	+	1	NA	NA	NA	-8194	NM_001291010	85030	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0.070000	0.641791	
mm_141566.1	chr17	32276636	32276836	-	1	NA	NA	NA	7387	NM_198094	57261	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0.000000	0.358209	
mm_86914.1	chr10	23796553	23796753	+	1	NA	NA	NA	-333	NM_183116	76306	Mm.294271	NM_183116	ENSMUSG00000037455	Slc18b1	1110021L09Rik	solute carrier family 18, subfamily B, member 1	protein-coding	0.025000	0.452736	85(GGTCATATAAGC,-,0.00)
mm_50196.1	chr6	41860207	41860407	+	1	NA	NA	NA	-32	NM_032542	84543	Mm.138766	NM_032542	ENSMUSG00000014104	Sval2	SLP-M	seminal vesicle antigen-like 2	protein-coding	0.005000	0.437811	
mm_111162.1	chr12	83562353	83562553	-	1	NA	NA	NA	34694	NM_183154	217695	Mm.59257	NM_183154	ENSMUSG00000042628	Zfyve1	DFCP1|G630053K23|TAFF1|ZNFN2A1|mKIAA1589	zinc finger, FYVE domain containing 1	protein-coding	0.005000	0.487562	
mm_4504.1	chr1	173730394	173730594	+	1	NA	NA	NA	11315	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.005000	0.343284	
mm_64192.1	chr7	141462622	141462822	+	1	NA	NA	NA	1628	NM_001025103	213573	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.005000	0.562189	
mm_98183.1	chr11	87774372	87774572	+	1	NA	NA	NA	13931	NM_172449	207777	Mm.342019	NM_172449	ENSMUSG00000034156	Bzrap1	D230016K05|PRAX-1|Tspoap1|mKIAA0612	benzodiazepine receptor associated protein 1	protein-coding	0.020000	0.477612	
mm_152110.1	chr19	6942325	6942525	-	1	NA	NA	NA	25	NM_001177361	107173	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	0.075000	0.666667	
mm_161481.1	chr15	82393921	82394121	-	1	NA	NA	NA	1	NM_001104531	545123	Mm.482764	NM_001104531	ENSMUSG00000068085	Cyp2d11	Cyp2d|P450-2D	cytochrome P450, family 2, subfamily d, polypeptide 11	protein-coding	0.000000	0.532338	-47(TCCTTTATAAGG,-,0.00),-45(CTTTATAAGGTG,+,0.00),-20(CCTTATAAAGGA,+,0.00)
mm_140791.1	chr17	19574270	19574470	-	1	NA	NA	NA	-2861	NM_001104563	627576	Mm.469857	NM_001104563	ENSMUSG00000094892	Vmn2r101	EG627576	vomeronasal 2, receptor 101	protein-coding	0.015000	0.398010	
mm_152627.1	chr19	12476873	12477073	-	1	NA	NA	NA	16194	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.005000	0.527363	
mm_145664.1	chr18	61130852	61131052	+	1	NA	NA	NA	13484	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.010000	0.547264	
mm_72855.1	chr8	88361453	88361653	+	1	NA	NA	NA	638	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.050000	0.567164	
mm_37720.1	chr4	129556412	129556612	-	1	NA	NA	NA	1299	NR_106199	102465997		NR_106199	ENSMUSG00000099070	Mir8119	Gm27567|mmu-mir-8119	microRNA 8119	ncRNA	0.055000	0.601990	
mm_167205.1	chr7	144240833	144241033	+	1	NA	NA	NA	-43452	NM_001081370	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.005000	0.383085	
mm_102260.1	chr11	55314482	55314682	-	1	NA	NA	NA	-2325	NM_001029988	245827	Mm.339363	NM_001029988	ENSMUSG00000055333	Fat2	EMI2|Fath2|Gm523|mKIAA0811	FAT atypical cadherin 2	protein-coding	0.045000	0.631841	
mm_58995.1	chr7	19149727	19149927	+	1	NA	NA	NA	-11	NM_026943	107686	Mm.29135	NM_026943	ENSMUSG00000040824	Snrpd2	1810009A06Rik|SMD2	small nuclear ribonucleoprotein D2	protein-coding	0.100000	0.661692	
mm_85534.1	chr9	106550145	106550345	-	1	NA	NA	NA	11380	NM_026645	68265	Mm.141451	NM_026645	ENSMUSG00000023577	Iqcf3	1700012F17Rik|AV040440	IQ motif containing F3	protein-coding	0.005000	0.447761	
mm_31599.1	chr4	57893627	57893827	+	1	NA	NA	NA	22537	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.015000	0.442786	-99(GTATTTTTAAGG,-,0.00)
mm_138714.1	chr17	36167520	36167720	+	1	NA	NA	NA	917	NM_001081032	667977	Mm.441651	NM_001081032	ENSMUSG00000073402	Gm8909	EG667977|H2-Tw5l|H2-gs17	predicted gene 8909	protein-coding	0.100000	0.636816	
mm_25516.1	chr3	113630133	113630333	+	1	NA	NA	NA	-84	NM_001038696	67225	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding	0.080000	0.517413	
mm_96044.1	chr11	59557283	59557483	+	1	NA	NA	NA	14355	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.020000	0.358209	
mm_153629.1	chr19	44021528	44021728	-	1	NA	NA	NA	7619	NM_001001446	226143	Mm.329866	NM_001001446	ENSMUSG00000025197	Cyp2c44	AW107714|BC034834|b2b386Clo	cytochrome P450, family 2, subfamily c, polypeptide 44	protein-coding	0.015000	0.497512	
mm_78476.1	chr9	32695582	32695782	+	1	NA	NA	NA	-360	NM_011808	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.070000	0.587065	
mm_103768.1	chr11	81901836	81902036	-	1	NA	NA	NA	41259	NR_038010	71388	Mm.158687	NR_038010	ENSMUSG00000020703	5530401A14Rik	-	RIKEN cDNA 5530401A14 gene	ncRNA	0.000000	0.353234	
mm_37094.1	chr4	116610644	116610844	-	1	NA	NA	NA	-13114	NR_029450	654318	Mm.255685	NR_029450	ENSMUSG00000085408	C530005A16Rik	D930044c15rik	RIKEN cDNA C530005A16 gene	ncRNA	0.010000	0.497512	
mm_123390.1	chr14	63405135	63405335	-	1	NA	NA	NA	11952	NM_007549	12143	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.010000	0.577114	
mm_80575.1	chr9	84037733	84037933	+	1	NA	NA	NA	89052	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.005000	0.437811	
mm_172151.1	chr6	41199977	41200177	-	1	NA	NA	NA	-102195	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.000000	0.388060	
mm_1711.1	chr1	75236483	75236683	+	1	NA	NA	NA	-119	NM_001159885	56812	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.080000	0.696517	
mm_88577.1	chr10	79682214	79682414	+	1	NA	NA	NA	119	NM_177613	216150	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|UBE2R1	cell division cycle 34	protein-coding	0.190000	0.835821	
mm_55651.1	chr6	72366888	72367088	-	1	NA	NA	NA	-16	NM_001331167	66510	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0.005000	0.452736	
mm_129742.1	chr15	82224246	82224446	-	1	NA	NA	NA	-10	NM_028075	72049	Mm.240047	NM_028075	ENSMUSG00000068105	Tnfrsf13c	2010006P15Rik|BAFF-R|Baffr|Bcmd|Bcmd-1|Bcmd1|Lvis22	tumor necrosis factor receptor superfamily, member 13c	protein-coding	0.070000	0.676617	
mm_104843.1	chr11	99230596	99230796	-	1	NA	NA	NA	321	NM_020618	57376	Mm.379086	NM_020618	ENSMUSG00000037935	Smarce1	2810417B20Rik|5830412H02Rik|9030408N19Rik|Baf27	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1	protein-coding	0.125000	0.661692	
mm_36464.1	chr4	82505763	82505963	-	1	NA	NA	NA	-84	NM_008687	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.060000	0.557214	
mm_129151.1	chr15	76229431	76229631	-	1	NA	NA	NA	-34	NM_201385	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.125000	0.781095	-5(GCCTCTTTAAGC,-,0.00)
mm_10655.1	chr2	20671770	20671970	+	1	NA	NA	NA	152357	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.015000	0.472637	
mm_108570.1	chr12	84806986	84807186	+	1	NA	NA	NA	33816	NM_028863	74316	Mm.25719	NM_028863	ENSMUSG00000021241	Isca2	0710001C05Rik|5730594E03Rik|Hbld1	iron-sulfur cluster assembly 2	protein-coding	0.025000	0.512438	
mm_5359.1	chr1	25781798	25781998	-	1	NA	NA	NA	47809	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.025000	0.378109	-59(ACTTTAATGGGC,+,0.00)
mm_12229.1	chr2	68554399	68554599	+	1	NA	NA	NA	-27914	NM_177651	227998	Mm.67562	NM_177651	ENSMUSG00000053896	4933409G03Rik	-	RIKEN cDNA 4933409G03 gene	protein-coding	0.045000	0.477612	
mm_97693.1	chr11	80154462	80154662	+	1	NA	NA	NA	400	NM_172133	216991	Mm.341520	NM_172133	ENSMUSG00000020709	Adap2	Centa2	ArfGAP with dual PH domains 2	protein-coding	0.065000	0.681592	
mm_140365.1	chr17	86962578	86962778	+	1	NA	NA	NA	-433	NM_145491	104215	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.035000	0.462687	
mm_109475.1	chr12	111421434	111421634	+	1	NA	NA	NA	4089	NM_001289488	74190	Mm.248640	NM_028807	ENSMUSG00000021280	Exoc3l4	1200009I06Rik|1600013K19Rik	exocyst complex component 3-like 4	protein-coding	0.020000	0.601990	
mm_90593.1	chr10	128284948	128285148	+	1	NA	NA	NA	13036	NM_031252	83430	Mm.125482	NM_031252	ENSMUSG00000025383	Il23a	IL-23|p19	interleukin 23, alpha subunit p19	protein-coding	0.035000	0.567164	
mm_84417.1	chr9	65574597	65574797	-	1	NA	NA	NA	5390	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.010000	0.542289	
mm_67398.1	chr7	79880183	79880383	-	1	NA	NA	NA	-37931	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.020000	0.611940	
mm_20758.1	chr2	140671349	140671549	-	1	NA	NA	NA	27	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.045000	0.587065	
mm_158185.1	chrX	104201092	104201292	-	1	NA	NA	NA	-75	NM_001077354	245555	Mm.381907	NM_001077354	ENSMUSG00000046449	C77370	A230051P11|C77386|KIDLIA|Kiaa2022|Xpn|mKIAA2022	expressed sequence C77370	protein-coding	0.040000	0.661692	
mm_21269.1	chr2	156862676	156862876	-	1	NA	NA	NA	169	NR_015591	74487	Mm.490465	NR_015591	ENSMUSG00000085741	5430405H02Rik	2610307N17Rik	RIKEN cDNA 5430405H02 gene	ncRNA	0.075000	0.587065	
mm_98656.1	chr11	96271117	96271317	+	1	NA	NA	NA	-113	NM_008270	15417	Mm.258271	NM_008270	ENSMUSG00000020875	Hoxb9	Hox-2.5	homeobox B9	protein-coding	0.090000	0.606965	
mm_41150.1	chr5	87929665	87929865	+	1	NA	NA	NA	4132	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.020000	0.447761	
mm_43186.1	chr5	128600725	128600925	+	1	NA	NA	NA	-138	NR_015517	319616	Mm.387738	NR_015517	ENSMUSG00000072591	5930412G12Rik	-	RIKEN cDNA 5930412G12 gene	ncRNA	0.080000	0.636816	
mm_1123.1	chr1	60098172	60098372	+	1	NA	NA	NA	25	NM_139150	241066	Mm.276441	NM_139150	ENSMUSG00000026017	Carf	Als2cr8|ECBRC-FC1|ECBRC-FC2	calcium response factor	protein-coding	0.090000	0.616915	
mm_30088.1	chr3	138143625	138143825	-	1	NA	NA	NA	187	NM_175389	108943	Mm.471692	NM_175389	ENSMUSG00000004127	Trmt10a	3110023L08Rik|AA794508|Rg9mtd2|Rnmtd2	tRNA methyltransferase 10A	protein-coding	0.075000	0.611940	
mm_149712.1	chr19	21653211	21653411	+	1	NA	NA	NA	2	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.170000	0.830846	
mm_81131.1	chr9	106499870	106500070	+	1	NA	NA	NA	3	NM_001146701	74267	Mm.116682	NM_028843	ENSMUSG00000066383	Iqcf1	1700055J15Rik	IQ motif containing F1	protein-coding	0.010000	0.517413	
mm_85050.1	chr9	90096632	90096832	-	1	NA	NA	NA	18088	NM_001039147	21761	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.010000	0.373134	65(GTGTCTTAAAGA,-,0.00)
mm_84415.1	chr9	65571707	65571907	-	1	NA	NA	NA	8280	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.010000	0.542289	
mm_129386.1	chr15	78191597	78191797	-	1	NA	NA	NA	12540	NM_001330686	19293	Mm.2766	NM_013645	ENSMUSG00000005716	Pvalb	PV|Parv|Pva	parvalbumin	protein-coding	0.040000	0.547264	
mm_88790.1	chr10	80622114	80622314	+	1	NA	NA	NA	-566	NM_134002	103236	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.105000	0.656716	
mm_69833.1	chr7	141273927	141274127	-	1	NA	NA	NA	2759	NM_028069	72040	Mm.29080	NM_028069	ENSMUSG00000025497	Cdhr5	1810074H01Rik|AI481143|Mucdhl|Mupcdh	cadherin-related family member 5	protein-coding	0.010000	0.522388	
mm_147084.1	chr18	35629709	35629909	-	1	NA	NA	NA	-2582	NM_011397	20522	Mm.22702	NM_011397	ENSMUSG00000024354	Slc23a1	D18Ucla2|SVCT1|Slc23a2|YSPL3	solute carrier family 23 (nucleobase transporters), member 1	protein-coding	0.035000	0.621891	
mm_85529.1	chr9	106476078	106476278	-	1	NA	NA	NA	771	NM_001311150	235587	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	0.025000	0.572139	
mm_143203.1	chr17	62803103	62803303	-	1	NA	NA	NA	78114	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.010000	0.303483	
mm_107864.1	chr12	69907651	69907851	+	1	NA	NA	NA	-14588	NM_201519	399510	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	0.020000	0.517413	
mm_150743.1	chr19	43782521	43782721	+	1	NA	NA	NA	313	NM_013806	12780	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0.010000	0.328358	
mm_158302.1	chrX	119897449	119897649	-	1	NA	NA	NA	-29647	NM_053114	93728	Mm.125979	NM_053114	ENSMUSG00000034732	Pabpc5	C820015E17	poly(A) binding protein, cytoplasmic 5	protein-coding	0.025000	0.477612	-32(GCCTTTATAAGC,+,0.00),-32(GCCTTTATAAGC,-,0.00)
mm_10594.1	chr2	18676860	18677060	+	1	NA	NA	NA	-58	NM_007552	12151	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	0.075000	0.651741	65(TAGTATTAAAGG,-,0.00)
mm_11837.1	chr2	45111085	45111285	+	1	NA	NA	NA	47	NR_110572	433424	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|OTTMUSG00000012358|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0.050000	0.557214	-16(GGCTATAAAAGA,-,0.00)
mm_5897.1	chr1	54585102	54585302	-	1	NA	NA	NA	-27518	NM_001163314	241062	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.005000	0.467662	
mm_82954.1	chr9	35570005	35570205	-	1	NA	NA	NA	-36	NM_029762	76832	Mm.482285	NM_029762	ENSMUSG00000050555	Hyls1	3010015K02Rik	hydrolethalus syndrome 1	protein-coding	0.110000	0.631841	
mm_152045.1	chr19	6141084	6141284	-	1	NA	NA	NA	-47	NM_019722	56327	Mm.21071	NM_019722	ENSMUSG00000024944	Arl2	2610009M23Rik|AI115441|AW553335	ADP-ribosylation factor-like 2	protein-coding	0.090000	0.656716	
mm_35735.1	chr4	45084471	45084671	-	1	NA	NA	NA	33	NM_001024142	269529	Mm.389552	NM_001024142	ENSMUSG00000048232	Fbxo10	FBX10|Gm634	F-box protein 10	protein-coding	0.150000	0.761194	
mm_128233.1	chr15	36607751	36607951	-	1	NA	NA	NA	1122	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.025000	0.517413	
mm_110064.1	chr12	21373436	21373636	-	1	NA	NA	NA	96	NR_102380	11491	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	0.095000	0.641791	
mm_127592.1	chr15	102391058	102391258	+	1	NA	NA	NA	-15158	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.000000	0.452736	
mm_52848.1	chr6	121846731	121846931	+	1	NA	NA	NA	8290	NM_008645	17836	Mm.1311	NM_008645	ENSMUSG00000059908	Mug1	-	murinoglobulin 1	protein-coding	0.000000	0.427861	-44(TGGTATTAAAGC,-,0.00)
mm_163562.1	chr13	24966853	24967053	-	1	NA	NA	NA	23801	NM_008156	14756	Mm.291831	NM_008156	ENSMUSG00000021340	Gpld1	6330541J12Rik|AW546131	glycosylphosphatidylinositol specific phospholipase D1	protein-coding	0.000000	0.368159	
mm_148139.1	chr18	76632770	76632970	-	1	NA	NA	NA	-223535	NM_001109743	664805	Mm.329543	NM_001109743	ENSMUSG00000091519	Skor2	Corl2|EG664805|Fussel18|Gm7348	SKI family transcriptional corepressor 2	protein-coding	0.025000	0.522388	
mm_76187.1	chr8	82402447	82402647	-	1	NA	NA	NA	39	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.015000	0.582090	
mm_165494.1	chr2	165793229	165793429	-	1	NA	NA	NA	64844	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.010000	0.527363	
mm_138232.1	chr17	34392210	34392410	+	1	NA	NA	NA	-6510	NM_001001177	407788	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	0.055000	0.527363	
mm_40662.1	chr5	65348237	65348437	+	1	NA	NA	NA	-74	NM_031180	83379	Mm.45274	NM_031180	ENSMUSG00000029195	Klb	AV071179|betaKlotho	klotho beta	protein-coding	0.030000	0.517413	
mm_24524.1	chr3	93144690	93144890	+	1	NA	NA	NA	3	NM_001081200	381457	Mm.458570	NM_001081200	ENSMUSG00000078657	Crnn	Gm1015	cornulin	protein-coding	0.000000	0.442786	-33(CTCTATAAAAGG,-,0.00)
mm_161419.1	chr15	36164704	36164904	-	1	NA	NA	NA	80	NM_001081253	78803	Mm.26393	NM_175281	ENSMUSG00000048230	Fbxo43	4930533G20Rik|Emi2	F-box protein 43	protein-coding	0.110000	0.706468	
mm_50768.1	chr6	53620363	53620563	+	1	NA	NA	NA	47089	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.005000	0.293532	
mm_83482.1	chr9	45907487	45907687	-	1	NA	NA	NA	-676	NM_001310840	235315	Mm.3255	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	0.005000	0.437811	
mm_136239.1	chr16	90934415	90934615	-	1	NA	NA	NA	334	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.090000	0.676617	
mm_171314.1	chr3	95357078	95357278	-	1	NA	NA	NA	24	NM_001163641	84505	Mm.490259	NM_018877	ENSMUSG00000015697	Setdb1	AU022152|ESET|KMT1E|mKIAA0067	SET domain, bifurcated 1	protein-coding	0.085000	0.671642	
mm_103500.1	chr11	76577584	76577784	-	1	NA	NA	NA	55	NM_198894	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.025000	0.572139	
mm_82825.1	chr9	31131664	31131864	-	1	NA	NA	NA	35	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.085000	0.726368	
mm_31082.1	chr4	41569752	41569952	+	1	NA	NA	NA	58	NM_175138	68922	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	0.050000	0.577114	
mm_42790.1	chr5	121525441	121525641	+	1	NA	NA	NA	-3846	NM_172126	280668	Mm.1453	NM_172126	ENSMUSG00000072647	Adam1a	Adam1|Ftna	a disintegrin and metallopeptidase domain 1a	protein-coding	0.010000	0.572139	
mm_43900.1	chr5	144223642	144223842	+	1	NA	NA	NA	-164	NM_027410	70381	Mm.239412	NM_027410	ENSMUSG00000066621	Tecpr1	2210010N04Rik|mKIAA1358	tectonin beta-propeller repeat containing 1	protein-coding	0.120000	0.681592	
mm_157314.1	chrX	21058122	21058322	-	1	NA	NA	NA	3816	NM_001013387	319535	Mm.170163	NM_001013387	ENSMUSG00000054737	Zfp182	6330583I20Rik|Znf182	zinc finger protein 182	protein-coding	0.005000	0.293532	
mm_126693.1	chr15	85017110	85017310	+	1	NA	NA	NA	69	NM_023478	22270	Mm.46214	NM_023478	ENSMUSG00000022435	Upk3a	1110017C07Rik|UP3a|UPIII|Upk3	uroplakin 3A	protein-coding	0.065000	0.666667	
mm_147463.1	chr18	46612912	46613112	-	1	NA	NA	NA	15308	NM_010120	13664	Mm.262037	NM_010120	ENSMUSG00000057561	Eif1a	C76390|Ef1a|Eftu|Eif4c|eIF-1A|eIF-4C	eukaryotic translation initiation factor 1A	protein-coding	0.000000	0.388060	
mm_134673.1	chr16	22402531	22402731	-	1	NA	NA	NA	36939	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.010000	0.422886	-70(CTCTTTAAAGGC,+,0.00),-70(CTCTTTAAAGGC,-,0.00),-33(GCACTTAAAAGG,-,0.00)
mm_146122.1	chr18	74442371	74442571	+	1	NA	NA	NA	-148	NM_201600	17919	Mm.260098	NM_008661	ENSMUSG00000025885	Myo5b	AI661750|mKIAA1119	myosin VB	protein-coding	0.155000	0.781095	-73(GGGCTTAAAGGC,-,0.00)
mm_15324.1	chr2	155751142	155751342	+	1	NA	NA	NA	25	NM_011171	19124	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	0.040000	0.606965	2(CACTTTAAAAGC,-,0.00),3(ACTTTAAAAGCC,+,0.00)
mm_150443.1	chr19	37985511	37985711	+	1	NA	NA	NA	57966	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.005000	0.393035	-56(CCTTTAATATGA,+,0.00),-15(ACCTCTTAAAGC,-,0.00),-14(CCTCTTAAAGCC,+,0.00)
mm_68878.1	chr7	126447405	126447605	-	1	NA	NA	NA	15568	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.020000	0.577114	
mm_36723.1	chr4	98817597	98817797	-	1	NA	NA	NA	-160	NM_172872	242553	Mm.440211	NM_172872	ENSMUSG00000035407	Kank4	AU021071|Ankrd38|BC060737|C130031J23	KN motif and ankyrin repeat domains 4	protein-coding	0.120000	0.731343	
mm_163836.1	chr14	19417714	19417914	+	1	NA	NA	NA	184773	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.035000	0.378109	
mm_173229.1	chrX	7907660	7907860	+	1	NA	NA	NA	8083	NM_001313693	21855	Mm.27393	NM_011591	ENSMUSG00000031158	Timm17b	17kDa|Sfc3|mTim17b	translocase of inner mitochondrial membrane 17b	protein-coding	0.020000	0.512438	
mm_38457.1	chr4	140581660	140581860	-	1	NA	NA	NA	66996	NM_001112723	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.040000	0.616915	
mm_8075.1	chr1	135585211	135585411	-	1	NA	NA	NA	44	NM_173437	215690	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.125000	0.731343	
mm_82169.1	chr9	123845344	123845544	+	1	NA	NA	NA	6217	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.010000	0.477612	
mm_86144.1	chr9	117251809	117252009	-	1	NA	NA	NA	574	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.020000	0.467662	
mm_43504.1	chr5	136987324	136987524	+	1	NA	NA	NA	405	NM_011962	26433	Mm.251003	NM_011962	ENSMUSG00000004846	Plod3	AI414586|LH3	procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3	protein-coding	0.085000	0.676617	
mm_23305.1	chr3	52709092	52709292	+	1	NA	NA	NA	-30532	NR_038079	329639	Mm.131245	NR_038079	ENSMUSG00000102785	Gm2447	100039832|A530017F20	predicted gene 2447	ncRNA	0.010000	0.393035	
mm_97727.1	chr11	80388983	80389183	+	1	NA	NA	NA	5804	NM_001130171	22680	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0.000000	0.452736	
mm_66967.1	chr7	62823602	62823802	-	1	NA	NA	NA	-359192	NM_013788	27412	Mm.422745	NM_013788	ENSMUSG00000070526	Peg12	Frat3	paternally expressed 12	protein-coding	0.015000	0.437811	
mm_13339.1	chr2	102787414	102787614	+	1	NA	NA	NA	81076	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.005000	0.492537	
mm_122309.1	chr14	36906187	36906387	-	1	NA	NA	NA	13248	NM_001347503	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.015000	0.522388	
mm_144157.1	chr18	5594115	5594315	+	1	NA	NA	NA	-1778	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	0.020000	0.407960	
mm_23048.1	chr3	35113379	35113579	+	1	NA	NA	NA	-190828	NR_105799	102466155		NR_105799	ENSMUSG00000098862	Mir6378	Gm27706|mmu-mir-6378	microRNA 6378	ncRNA	0.020000	0.572139	
mm_56343.1	chr6	92870006	92870206	-	1	NA	NA	NA	31335	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	0.030000	0.562189	
mm_12657.1	chr2	75482029	75482229	+	1	NA	NA	NA	-37950	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA	0.020000	0.442786	
mm_64285.1	chr7	141845265	141845465	+	1	NA	NA	NA	6293	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.020000	0.577114	
mm_15138.1	chr2	153974657	153974857	+	1	NA	NA	NA	-188	NM_001080811	545477	Mm.379973	NM_001080811	ENSMUSG00000078998	Bpifa6	EG545477|Gm5840|Splunc6	BPI fold containing family A, member 6	protein-coding	0.010000	0.507463	
mm_88170.1	chr10	69764838	69765038	+	1	NA	NA	NA	-160594	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.010000	0.398010	
mm_101807.1	chr11	46357931	46358131	-	1	NA	NA	NA	31484	NM_001281968	16428	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	0.005000	0.422886	
mm_99766.1	chr11	106999581	106999781	+	1	NA	NA	NA	-156	NM_010655	16647	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.060000	0.592040	
mm_69560.1	chr7	135700259	135700459	-	1	NA	NA	NA	16020	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.010000	0.442786	
mm_53237.1	chr6	127453576	127453776	+	1	NA	NA	NA	-47	NM_181402	101187	Mm.110818	NM_181402	ENSMUSG00000037997	Parp11	5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11	poly (ADP-ribose) polymerase family, member 11	protein-coding	0.080000	0.636816	
mm_58384.1	chr6	149307690	149307890	-	1	NA	NA	NA	-1624	NM_001289661	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.010000	0.398010	-41(GCCCTTAAAAAG,-,0.00),-39(CCTTAAAAAGTA,+,0.00)
mm_6045.1	chr1	59763246	59763446	-	1	NA	NA	NA	-933	NM_007561	12168	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0.140000	0.796020	
mm_19466.1	chr2	92433940	92434140	-	1	NA	NA	NA	29	NM_009963	12953	Mm.254181	NM_009963	ENSMUSG00000068742	Cry2	AV006279|D130054K12Rik	cryptochrome 2 (photolyase-like)	protein-coding	0.135000	0.736318	
mm_156065.1	chrX	109160747	109160947	+	1	NA	NA	NA	-35909	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.010000	0.402985	64(GGGTATATAAGT,-,0.00)
mm_133133.1	chr16	65839709	65839909	+	1	NA	NA	NA	24176	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.015000	0.398010	
mm_92687.1	chr10	80656402	80656602	-	1	NA	NA	NA	569	NM_145361	208198	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0.135000	0.766169	
mm_102598.1	chr11	62343169	62343369	-	1	NA	NA	NA	61796	NM_029704	72795	Mm.489722	NM_028360	ENSMUSG00000042298	Ttc19	2010204O13Rik|2810460C24Rik|AI505442	tetratricopeptide repeat domain 19	protein-coding	0.025000	0.447761	
mm_67372.1	chr7	79841632	79841832	-	1	NA	NA	NA	620	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.045000	0.577114	
mm_20732.1	chr2	137082051	137082251	-	1	NA	NA	NA	34369	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.010000	0.348259	
mm_42866.1	chr5	122232171	122232371	+	1	NA	NA	NA	21984	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.005000	0.437811	
mm_41180.1	chr5	88268829	88269029	+	1	NA	NA	NA	10	NM_001110779	665615	Mm.366701	NM_001110779	ENSMUSG00000090302	Gm7714	EG665615	predicted gene 7714	protein-coding	0.000000	0.398010	
mm_39124.1	chr4	155019318	155019518	-	1	NA	NA	NA	-8434	NM_001113360	269615	Mm.379458	NM_175556	ENSMUSG00000029055	Plch2	A930027K05Rik|PLCeta2|Plc-eta2|Plcl4	phospholipase C, eta 2	protein-coding	0.045000	0.611940	
mm_58851.1	chr7	16875247	16875447	+	1	NA	NA	NA	30	NM_001081655	629378	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	0.110000	0.766169	
mm_124517.1	chr14	121965007	121965207	-	1	NA	NA	NA	86	NM_183031	321019	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.025000	0.452736	-59(CACCATAAAAGG,-,0.00),-57(CCATAAAAGGAC,+,0.00),-34(CACTCTTAAAGC,-,0.00)
mm_25072.1	chr3	99885301	99885501	+	1	NA	NA	NA	-16	NM_028892	74362	Mm.55847	NM_028892	ENSMUSG00000027867	Spag17	4931427F14Rik|PF6|Spag17-ps	sperm associated antigen 17	protein-coding	0.050000	0.592040	
mm_59443.1	chr7	27133117	27133317	+	1	NA	NA	NA	13262	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.030000	0.527363	
mm_142713.1	chr17	47924341	47924541	-	1	NA	NA	NA	191	NM_028767	74123	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.140000	0.771144	
mm_31081.1	chr4	41569707	41569907	+	1	NA	NA	NA	13	NM_175138	68922	Mm.79127	NM_175138	ENSMUSG00000061322	Dnaic1	1110066F04Rik|BB124644|Dnai1|b2b1526Clo	dynein, axonemal, intermediate chain 1	protein-coding	0.070000	0.631841	
mm_137332.1	chr17	25089280	25089480	+	1	NA	NA	NA	-8266	NM_001001183	407831	Mm.34379	NM_001001183	ENSMUSG00000024168	Tmem204	-	transmembrane protein 204	protein-coding	0.030000	0.512438	
mm_24740.1	chr3	95283381	95283581	+	1	NA	NA	NA	546	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.100000	0.681592	
mm_58408.1	chr7	3288930	3289130	+	1	NA	NA	NA	-8	NM_001093764	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.020000	0.552239	
mm_151979.1	chr19	5828204	5828404	-	1	NA	NA	NA	17174	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.015000	0.502488	
mm_14706.1	chr2	142902871	142903071	+	1	NA	NA	NA	6	NR_131921	75053	Mm.72638	NR_131921	ENSMUSG00000086504	Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA	0.050000	0.537313	
mm_37356.1	chr4	120532016	120532216	-	1	NA	NA	NA	-115	NM_177570	194219	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	0.020000	0.512438	
mm_91066.1	chr10	19005482	19005682	-	1	NA	NA	NA	6381	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.020000	0.497512	
mm_141326.1	chr17	28451932	28452132	-	1	NA	NA	NA	34117	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.015000	0.427861	
mm_61868.1	chr7	89404286	89404486	+	1	NA	NA	NA	20	NM_008055	14366	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	0.115000	0.701493	
mm_54242.1	chr6	28247119	28247319	-	1	NA	NA	NA	14382	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.005000	0.288557	
mm_32807.1	chr4	117124569	117124769	+	1	NA	NA	NA	1056	NR_024078	78611	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0.020000	0.532338	
mm_159054.1	chr1	189786697	189786897	+	1	NA	NA	NA	58529	NM_008976	19250	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|OTTMUSG00000022087|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	0.070000	0.621891	
mm_101994.1	chr11	50943673	50943873	-	1	NA	NA	NA	9859	NM_008936	19127	Mm.1386	NM_008936	ENSMUSG00000044542	Prop1	Prop-1|df	paired like homeodomain factor 1	protein-coding	0.040000	0.597015	
mm_84990.1	chr9	86571711	86571911	-	1	NA	NA	NA	31	NM_001163746	109785	Mm.390201	NM_028352	ENSMUSG00000056131	Pgm3	2810473H05Rik|Agm1|BB187688|C77933|PAGM|Pgm-3	phosphoglucomutase 3	protein-coding	0.095000	0.671642	
mm_75631.1	chr8	64692960	64693160	-	1	NA	NA	NA	49	NM_013494	12876	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|R74677|fat	carboxypeptidase E	protein-coding	0.100000	0.711443	
mm_136309.1	chr16	91647603	91647803	-	1	NA	NA	NA	-121	NM_019973	20658	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	0.130000	0.671642	
mm_42992.1	chr5	123344242	123344442	+	1	NA	NA	NA	-106	NM_029850	77045	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0.105000	0.781095	
mm_7437.1	chr1	119997130	119997330	-	1	NA	NA	NA	-2020	NM_001115074	226356	Mm.297290	NM_001115074	ENSMUSG00000036962	Cfap221	Gm101|Pcdp1	cilia and flagella associated protein 221	protein-coding	0.090000	0.611940	
mm_152426.1	chr19	10676567	10676767	-	1	NA	NA	NA	1404	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.055000	0.572139	
mm_29807.1	chr3	127789785	127789985	-	1	NA	NA	NA	-28	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.065000	0.666667	
mm_155677.1	chrX	91413530	91413730	+	1	NA	NA	NA	21130	NM_001114678	278167	Mm.473682	NM_001114678	ENSMUSG00000094861	Gm5072	EG278167	predicted gene 5072	protein-coding	0.005000	0.378109	-17(CTGTTTAAGAGG,-,0.00)
mm_29039.1	chr3	102782612	102782812	-	1	NA	NA	NA	2	NM_009432	22094	Mm.110730	NM_009432	ENSMUSG00000027857	Tshb	-	thyroid stimulating hormone, beta subunit	protein-coding	0.010000	0.383085	
mm_33608.1	chr4	132581094	132581294	+	1	NA	NA	NA	17127	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.025000	0.557214	
mm_77822.1	chr9	3403945	3404145	+	1	NA	NA	NA	-40	NM_027545	244672	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	0.075000	0.472637	
mm_124152.1	chr14	93202012	93202212	-	1	NA	NA	NA	686776	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.333333	
mm_151047.1	chr19	47024667	47024867	+	1	NA	NA	NA	-9578	NM_001164363	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.005000	0.402985	
mm_89330.1	chr10	87932710	87932910	+	1	NA	NA	NA	-33861	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.000000	0.378109	
mm_37204.1	chr4	117872454	117872654	-	1	NA	NA	NA	-84	NM_001034876	381546	Mm.440118	NM_001034876	ENSMUSG00000078588	Ccdc24	Gm1028	coiled-coil domain containing 24	protein-coding	0.050000	0.646766	
mm_170178.1	chr17	60783369	60783569	+	1	NA	NA	NA	-1770147	NM_026497	67993	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.065000	0.656716	
mm_171716.1	chr4	82193357	82193557	-	1	NA	NA	NA	128077	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	0.065000	0.661692	
mm_39718.1	chr5	28077984	28078184	+	1	NA	NA	NA	6672	NM_153526	231070	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.015000	0.407960	
mm_17407.1	chr2	27246682	27246882	-	1	NA	NA	NA	521	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.010000	0.552239	
mm_143436.1	chr17	70851790	70851990	-	1	NA	NA	NA	-156	NM_001164075	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.070000	0.557214	
mm_99536.1	chr11	103193007	103193207	+	1	NA	NA	NA	15441	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.080000	0.616915	
mm_36545.1	chr4	86669400	86669600	-	1	NA	NA	NA	559	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.010000	0.517413	
mm_45760.1	chr5	86890588	86890788	-	1	NA	NA	NA	16249	NM_153598	100727	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding	0.000000	0.412935	
mm_14743.1	chr2	144375257	144375457	+	1	NA	NA	NA	6322	NM_181417	228714	Mm.227925	NM_181417	ENSMUSG00000027425	Csrp2bp	2510008M08Rik|ATAC2|AU023459|D2Ertd473e|D2Wsu131e|E430020F17|Kat14	cysteine and glycine-rich protein 2 binding protein	protein-coding	0.015000	0.597015	
mm_30274.1	chr3	146812867	146813067	-	1	NA	NA	NA	-21	NM_011100	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.185000	0.805970	
mm_104868.1	chr11	99387984	99388184	-	1	NA	NA	NA	1280	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.015000	0.497512	
mm_121878.1	chr14	21052101	21052301	-	1	NA	NA	NA	241	NM_018829	55946	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.070000	0.651741	
mm_107355.1	chr12	32821527	32821727	+	1	NA	NA	NA	1292	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.005000	0.278607	27(TCATTTTAAAGG,-,0.00),28(CATTTTAAAGGG,+,0.00)
mm_48783.1	chr5	148552713	148552913	-	1	NA	NA	NA	-25	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.085000	0.681592	
mm_130718.1	chr15	101052158	101052358	-	1	NA	NA	NA	2141	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.040000	0.492537	
mm_46927.1	chr5	114690838	114691038	-	1	NA	NA	NA	-3	NM_019821	56356	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0.160000	0.796020	
mm_57498.1	chr6	125344301	125344501	-	1	NA	NA	NA	-5322	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.030000	0.547264	
mm_27820.1	chr3	79075308	79075508	-	1	NA	NA	NA	69479	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.393035	27(GACCATTAAAAC,-,0.00)
mm_25790.1	chr3	126829937	126830137	+	1	NA	NA	NA	113349	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.000000	0.487562	
mm_33055.1	chr4	123183429	123183629	+	1	NA	NA	NA	25	NM_174998	170638	Mm.270641	NM_174998	ENSMUSG00000046093	Hpcal4	AI846570|NVP-2	hippocalcin-like 4	protein-coding	0.095000	0.601990	
mm_75964.1	chr8	71723233	71723433	-	1	NA	NA	NA	2348	NR_131256	74015	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.030000	0.666667	
mm_140854.1	chr17	23700057	23700257	-	1	NA	NA	NA	-16131	NM_020293	56863	Mm.491368	NM_020293	ENSMUSG00000066720	Cldn9	nmf329	claudin 9	protein-coding	0.115000	0.726368	
mm_3732.1	chr1	155098146	155098346	+	1	NA	NA	NA	1390	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.040000	0.527363	
mm_164973.1	chr19	7483189	7483389	-	1	NA	NA	NA	2	NM_001271486	20168	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0.130000	0.686567	
mm_44967.1	chr5	36767316	36767516	-	1	NA	NA	NA	-18737	NM_133724	117197	Mm.46744	NM_133724	ENSMUSG00000060708	Bloc1s4	2610101N07Rik|Blos4|Cno	biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino	protein-coding	0.015000	0.562189	
mm_7600.1	chr1	125989151	125989351	-	1	NA	NA	NA	-76323	NM_001311089	72585	Mm.490405	NM_145100	ENSMUSG00000026344	Lypd1	2700050C12Rik|AI853408|C530008O16Rik|Lynx2|Lypdc1	Ly6/Plaur domain containing 1	protein-coding	0.005000	0.338308	
mm_146033.1	chr18	69521694	69521894	+	1	NA	NA	NA	176073	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.010000	0.482587	
mm_25996.1	chr3	134239167	134239367	+	1	NA	NA	NA	1316	NR_035435	100316832		NR_035435	ENSMUSG00000084564	Mir1895	Mirn1895|mmu-mir-1895	microRNA 1895	ncRNA	0.050000	0.567164	
mm_8219.1	chr1	138162451	138162651	-	1	NA	NA	NA	12575	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.303483	
mm_101224.1	chr11	20200833	20201033	-	1	NA	NA	NA	-669	NM_008996	19324	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0.035000	0.631841	
mm_160413.1	chr8	75213809	75214009	+	1	NA	NA	NA	-35	NM_029182	75141	Mm.179267	NM_029182	ENSMUSG00000034472	Rasd2	4930526B11Rik|AU045414|Rhes|TEM-2|TEM2	RASD family, member 2	protein-coding	0.125000	0.766169	
mm_84325.1	chr9	64016940	64017140	-	1	NA	NA	NA	5019	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.040000	0.592040	
mm_113208.1	chr13	25056113	25056313	+	1	NA	NA	NA	209	NM_177577	195208	Mm.284719	NM_177577	ENSMUSG00000035910	Dcdc2a	AW492955|Dcdc2|RU2	doublecortin domain containing 2a	protein-coding	0.085000	0.676617	
mm_118087.1	chr13	103764404	103764604	-	1	NA	NA	NA	78	NM_172592	218543	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0.015000	0.263682	
mm_5172.1	chr1	10232914	10233114	-	1	NA	NA	NA	-344	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.160000	0.766169	
mm_83818.1	chr9	53666982	53667182	-	1	NA	NA	NA	425	NM_001161618	75717	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0.115000	0.696517	
mm_163322.1	chr12	7988616	7988816	+	1	NA	NA	NA	11039	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.000000	0.492537	
mm_107688.1	chr12	55302744	55302944	+	1	NA	NA	NA	156	NM_021529	59032	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	0.060000	0.467662	
mm_163650.1	chr13	64161368	64161568	+	1	NA	NA	NA	-398	NM_019986	56541	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	0.020000	0.527363	
mm_21674.1	chr2	164425767	164425967	-	1	NA	NA	NA	17321	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.000000	0.477612	
mm_105178.1	chr11	101785111	101785311	-	1	NA	NA	NA	99	NM_008815	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.080000	0.691542	
mm_100184.1	chr11	116657032	116657232	+	1	NA	NA	NA	24	NM_001163318	100038570	Mm.390349	NM_001163318	ENSMUSG00000075410	Prcd	Gm11744|OTTMUSG00000003947	progressive rod cone degeneration protein	protein-coding	0.030000	0.577114	
mm_82712.1	chr9	24503224	24503424	-	1	NA	NA	NA	-184	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.200000	0.820896	
mm_45978.1	chr5	90472579	90472779	-	1	NA	NA	NA	11809	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.005000	0.363184	
mm_43494.1	chr5	136967721	136967921	+	1	NA	NA	NA	-48	NM_021719	60363	Mm.87202	NM_021719	ENSMUSG00000001739	Cldn15	2210009B08Rik|BB107105	claudin 15	protein-coding	0.035000	0.621891	
mm_58842.1	chr7	16842825	16843025	+	1	NA	NA	NA	23	NM_001252458	101540	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.070000	0.636816	
mm_114234.1	chr13	56609389	56609589	+	1	NA	NA	NA	-114	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.070000	0.646766	
mm_20189.1	chr2	122609912	122610112	-	1	NA	NA	NA	1265	NM_025961	67092	Mm.29975	NM_025961	ENSMUSG00000027199	Gatm	1810003P21Rik|AI314789|AT	glycine amidinotransferase (L-arginine:glycine amidinotransferase)	protein-coding	0.000000	0.368159	
mm_158360.1	chrX	134601048	134601248	-	1	NA	NA	NA	-31	NM_001313716	56258	Mm.315909	NM_019868	ENSMUSG00000045427	Hnrnph2	DXHXS1271E|Ftp-3|Ftp3|H'|HNRNP|Hnrph2	heterogeneous nuclear ribonucleoprotein H2	protein-coding	0.065000	0.502488	
mm_56885.1	chr6	119031107	119031307	-	1	NA	NA	NA	77288	NM_001159534	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.005000	0.358209	
mm_4246.1	chr1	171389144	171389344	+	1	NA	NA	NA	284	NM_001005508	226652	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	0.020000	0.597015	
mm_14543.1	chr2	132816088	132816288	+	1	NA	NA	NA	47	NM_001291054	66634	Mm.157070	NM_025676	ENSMUSG00000027353	Mcm8	5730432L01Rik	minichromosome maintenance 8 homologous recombination repair factor	protein-coding	0.100000	0.611940	
mm_95394.1	chr11	49609613	49609813	+	1	NA	NA	NA	34	NM_008029	14257	Mm.3291	NM_008029	ENSMUSG00000020357	Flt4	AI323512|Chy|Flt-4|VEGFR-3|VEGFR3	FMS-like tyrosine kinase 4	protein-coding	0.145000	0.800995	
mm_78346.1	chr9	25301372	25301572	+	1	NA	NA	NA	49033	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.010000	0.368159	
mm_40981.1	chr5	77126593	77126793	+	1	NA	NA	NA	-11570	NM_175606	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.015000	0.522388	
mm_103303.1	chr11	72606982	72607182	-	1	NA	NA	NA	-179	NM_025985	67128	Mm.458052	NM_025985	ENSMUSG00000020794	Ube2g1	2700059C12Rik|AI256795|AU014992|AW552068|D130023C12Rik	ubiquitin-conjugating enzyme E2G 1	protein-coding	0.110000	0.686567	
mm_97485.1	chr11	78324581	78324781	+	1	NA	NA	NA	483	NM_009657	11676	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0.030000	0.537313	
mm_151600.1	chr19	3533322	3533522	-	1	NA	NA	NA	42327	NM_001164159	52036	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.040000	0.522388	-37(TTCTATAAAAAC,-,0.00)
mm_1230.1	chr1	62768886	62769086	+	1	NA	NA	NA	25746	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.015000	0.552239	
mm_4981.1	chr1	191623215	191623415	+	1	NA	NA	NA	47679	NM_001306204	77065	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	0.010000	0.477612	51(GCTTATAGACCA,+,0.00)
mm_141498.1	chr17	31559468	31559668	-	1	NA	NA	NA	-5205	NR_027493	18771	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.005000	0.482587	
mm_15603.1	chr2	160698084	160698284	+	1	NA	NA	NA	-33126	NM_021280	18803	Mm.44463	NM_021280	ENSMUSG00000016933	Plcg1	AI894140|Cded|Plc-1|Plc-gamma1|Plcg-1	phospholipase C, gamma 1	protein-coding	0.010000	0.422886	-14(GAGCATAAAGGG,-,0.00)
mm_134143.1	chr16	10784614	10784814	-	1	NA	NA	NA	822	NM_009896	12703	Mm.130	NM_009896	ENSMUSG00000038037	Socs1	Cish1|Cish7|JAB|SOCS-1|SSI-1	suppressor of cytokine signaling 1	protein-coding	0.125000	0.726368	
mm_168990.1	chr12	99645050	99645250	+	1	NA	NA	NA	-17176	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.130000	0.686567	
mm_42889.1	chr5	122391850	122392050	+	1	NA	NA	NA	72	NM_019824	56378	Mm.275942	NM_019824	ENSMUSG00000029465	Arpc3	1110006A04Rik|p21-ARC|p21-Ar|p21Arc	actin related protein 2/3 complex, subunit 3	protein-coding	0.110000	0.646766	
mm_5866.1	chr1	53776552	53776752	-	1	NA	NA	NA	8563	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.025000	0.412935	
mm_132183.1	chr16	32419625	32419825	+	1	NA	NA	NA	23	NM_001347183	66061	Mm.302693	NM_025329	ENSMUSG00000014075	Tctex1d2	0610012D17Rik|2410011K15Rik	Tctex1 domain containing 2	protein-coding	0.080000	0.621891	
mm_78811.1	chr9	44068107	44068307	+	1	NA	NA	NA	1186	NM_198092	53376	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.015000	0.592040	
mm_32888.1	chr4	118963693	118963893	+	1	NA	NA	NA	1826	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.010000	0.537313	
mm_112881.1	chr13	20857215	20857415	+	1	NA	NA	NA	63202	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.417910	30(TTATTTATAAGG,-,0.00)
mm_125262.1	chr15	35371231	35371431	+	1	NA	NA	NA	-215	NM_177151	666173	Mm.309250	NM_177151	ENSMUSG00000037646	Vps13b	1810042B05Rik|2310042E16Rik|4732488H20|C330002D13Rik|C87206|Coh1|D230005K13|mKIAA0532|mKIAA5032	vacuolar protein sorting 13B	protein-coding	0.095000	0.641791	
mm_30065.1	chr3	137918316	137918516	-	1	NA	NA	NA	-139	NM_019920	56692	Mm.331392	NM_019920	ENSMUSG00000091512	Lamtor3	AW556229|Map2k1ip1|Mapbp|Mapksp1|Mp1	late endosomal/lysosomal adaptor, MAPK and MTOR activator 3	protein-coding	0.095000	0.606965	
mm_152606.1	chr19	11818842	11819042	-	1	NA	NA	NA	461	NM_001286543	20908	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.155000	0.786070	-77(GGCCCTTTAAGC,-,0.00),-75(CCCTTTAAGCAG,+,0.00)
mm_43568.1	chr5	137636681	137636881	+	1	NA	NA	NA	-4692	NM_001081962	751865	Mm.200763	NM_001081962	ENSMUSG00000079165	Sap25	-	sin3 associated polypeptide	protein-coding	0.040000	0.597015	
mm_14325.1	chr2	129365945	129366145	+	1	NA	NA	NA	-3857	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.010000	0.502488	
mm_128587.1	chr15	58076386	58076586	-	1	NA	NA	NA	22	NM_001042438	22770	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	0.105000	0.726368	
mm_105097.1	chr11	100939307	100939507	-	1	NA	NA	NA	133	NM_213660	20848	Mm.249934	NM_011486	ENSMUSG00000004040	Stat3	1110034C02Rik|AW109958|Aprf	signal transducer and activator of transcription 3	protein-coding	0.090000	0.681592	
mm_164837.1	chr18	41573235	41573435	-	1	NA	NA	NA	377859	NM_029942	77619	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	0.005000	0.388060	
mm_30281.1	chr3	148927856	148928056	-	1	NA	NA	NA	26679	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.015000	0.338308	
mm_57021.1	chr6	122279732	122279932	-	1	NA	NA	NA	3001	NM_016970	50928	Mm.20434	NM_016970	ENSMUSG00000030114	Klrg1	2F1-Ag|MAFA|MAFA-L	killer cell lectin-like receptor subfamily G, member 1	protein-coding	0.015000	0.552239	
mm_134098.1	chr16	9967360	9967560	-	1	NA	NA	NA	25073	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.000000	0.437811	-75(CCCCTTTAAAGT,-,0.00),-74(CCCTTTAAAGTG,+,0.00),-73(CCTTTAAAGTGC,+,0.00)
mm_154202.1	chr19	59031539	59031739	-	1	NA	NA	NA	44430	NM_175172	71653	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Kiaa1598|Shootin1|mKIAA1598	shootin 1	protein-coding	0.000000	0.358209	
mm_79524.1	chr9	57589437	57589637	+	1	NA	NA	NA	85	NM_027895	71742	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	0.115000	0.746269	
mm_71362.1	chr8	45690033	45690233	+	1	NA	NA	NA	28140	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.005000	0.368159	
mm_38071.1	chr4	134106793	134106993	-	1	NA	NA	NA	4310	NM_026257	67586	Mm.282029	NM_026257	ENSMUSG00000012126	Ubxn11	4930506L07Rik|D4Bwg1540e|Soc|Soci|Ubxd5	UBX domain protein 11	protein-coding	0.015000	0.487562	
mm_61810.1	chr7	87246726	87246926	+	1	NA	NA	NA	177	NM_001285833	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	0.080000	0.711443	
mm_95059.1	chr11	32422604	32422804	+	1	NA	NA	NA	-32668	NM_173784	327900	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	0.010000	0.557214	
mm_159475.1	chr4	32864299	32864499	-	1	NA	NA	NA	59106	NM_080471	140577	Mm.214766	NM_080471	ENSMUSG00000040183	Ankrd6	-	ankyrin repeat domain 6	protein-coding	0.050000	0.562189	
mm_45923.1	chr5	89441787	89441987	-	1	NA	NA	NA	16011	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.005000	0.487562	
mm_63055.1	chr7	121914120	121914320	+	1	NA	NA	NA	49182	NR_073548	20277	Mm.7709	NM_011325	ENSMUSG00000030873	Scnn1b	-	sodium channel, nonvoltage-gated 1 beta	protein-coding	0.010000	0.507463	
mm_67322.1	chr7	79721127	79721327	-	1	NA	NA	NA	-7041	NM_001291222	16576	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0.025000	0.427861	41(AACTATAAAAGC,-,0.00)
mm_138853.1	chr17	40934614	40934814	+	1	NA	NA	NA	29	NM_008650	17850	Mm.259884	NM_008650	ENSMUSG00000023921	Mut	D230010K02Rik|Mcm	methylmalonyl-Coenzyme A mutase	protein-coding	0.100000	0.646766	
mm_151370.1	chr19	55931610	55931810	+	1	NA	NA	NA	36389	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.050000	0.631841	
mm_34446.1	chr4	148000645	148000845	+	1	NA	NA	NA	23	NM_008725	230899	Mm.482123	NM_008725	ENSMUSG00000041616	Nppa	ANP|Anf|Pnd	natriuretic peptide type A	protein-coding	0.030000	0.552239	-35(GGCTATAAAAAC,-,0.00)
mm_127569.1	chr15	102279338	102279538	+	1	NA	NA	NA	-18	NM_134100	106073	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0.110000	0.741294	
mm_3374.1	chr1	138971140	138971340	+	1	NA	NA	NA	3519	NM_181347	329260	Mm.337604	NM_181347	ENSMUSG00000056268	Dennd1b	4632404N19Rik|4930467M19Rik|6820401H01Rik|F730008N07Rik	DENN/MADD domain containing 1B	protein-coding	0.000000	0.288557	
mm_92776.1	chr10	81179296	81179496	-	1	NA	NA	NA	435	NR_028549	100217454		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.015000	0.532338	
mm_47746.1	chr5	130255314	130255514	-	1	NA	NA	NA	116	NM_023248	66711	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	Shwachman-Bodian-Diamond syndrome homolog (human)	protein-coding	0.095000	0.621891	
mm_28834.1	chr3	96557696	96557896	-	1	NA	NA	NA	-161	NM_001009935	56338	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.075000	0.681592	
mm_54713.1	chr6	39725396	39725596	-	1	NA	NA	NA	-33	NM_139294	109880	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	0.145000	0.756219	
mm_130081.1	chr15	89376980	89377180	-	1	NA	NA	NA	-43	NM_138302	72962	Mm.287977	NM_138302	ENSMUSG00000022615	Tymp	2900072D10Rik|Ecgf1|PD-ECGF|PDECGF|Pdgfec	thymidine phosphorylase	protein-coding	0.025000	0.502488	
mm_112465.1	chr13	5867792	5867992	+	1	NA	NA	NA	6403	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.005000	0.442786	
mm_86013.1	chr9	112234715	112234915	-	1	NA	NA	NA	26	NM_001177619	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.060000	0.636816	
mm_18972.1	chr2	76832035	76832235	-	1	NA	NA	NA	150412	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.015000	0.407960	
mm_42646.1	chr5	118637610	118637810	+	1	NA	NA	NA	76991	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.010000	0.318408	
mm_2155.1	chr1	88186532	88186732	+	1	NA	NA	NA	-13979	NM_013701	22236	Mm.300095	NM_013701	ENSMUSG00000090171	Ugt1a2	UDPGT 1-2|Ugt1	UDP glucuronosyltransferase 1 family, polypeptide A2	protein-coding	0.005000	0.462687	
mm_10618.1	chr2	19371331	19371531	+	1	NA	NA	NA	-205	NM_029619	76467	Mm.27166	NM_029619	ENSMUSG00000023094	Msrb2	2310050L06Rik|Mrsb|Msrb|Pilb	methionine sulfoxide reductase B2	protein-coding	0.025000	0.442786	
mm_163819.1	chr14	19416595	19416795	+	1	NA	NA	NA	185892	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.348259	
mm_103393.1	chr11	75431219	75431419	-	1	NA	NA	NA	8182	NM_008878	18816	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	0.015000	0.562189	
mm_19684.1	chr2	103455022	103455222	-	1	NA	NA	NA	30031	NM_009804	12359	Mm.4215	NM_009804	ENSMUSG00000027187	Cat	2210418N07|Cas-1|Cas1|Cs-1	catalase	protein-coding	0.015000	0.547264	
mm_86768.1	chr10	19934160	19934360	+	1	NA	NA	NA	-266	NM_008580	26408	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.145000	0.766169	
mm_147724.1	chr18	60848888	60849088	-	1	NA	NA	NA	-24	NM_001198984	21453	Mm.486251	NM_011552	ENSMUSG00000024613	Tcof1	AA408847|AW209012|treacle	treacle ribosome biogenesis factor 1	protein-coding	0.090000	0.651741	
mm_171846.1	chr5	16903731	16903931	+	1	NA	NA	NA	349930	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.055000	0.646766	
mm_89356.1	chr10	88201128	88201328	+	1	NA	NA	NA	131	NM_027487	67282	Mm.208465	NM_026070	ENSMUSG00000020056	Washc3	2900091E11Rik|5730495F03Rik|Ccdc53	WASH complex subunit 3	protein-coding	0.045000	0.592040	
mm_106505.1	chr11	120437658	120437858	-	1	NA	NA	NA	-58	NM_199469	217365	Mm.309520	NM_199469	ENSMUSG00000039703	Nploc4	AK129375|Npl4|mKIAA1499	NPL4 homolog, ubiquitin recognition factor	protein-coding	0.100000	0.701493	
mm_122850.1	chr14	54768274	54768474	-	1	NA	NA	NA	13512	NM_016972	50934	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	0.020000	0.452736	
mm_13464.1	chr2	105675544	105675744	+	1	NA	NA	NA	-100	NM_001244200	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.035000	0.562189	
mm_118224.1	chr13	110545353	110545553	-	1	NA	NA	NA	150409	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.005000	0.373134	
mm_36460.1	chr4	82505629	82505829	-	1	NA	NA	NA	50	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.040000	0.462687	
mm_144710.1	chr18	34932201	34932401	+	1	NA	NA	NA	-298	NM_144866	225363	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.075000	0.582090	-37(GCCTCTTAAAGG,-,0.00),-36(CCTCTTAAAGGG,+,0.00),-35(CTCTTAAAGGGC,+,0.00)
mm_27711.1	chr3	67515582	67515782	-	1	NA	NA	NA	-159	NM_001164763	109222	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	0.050000	0.597015	
mm_36900.1	chr4	107803267	107803467	-	1	NA	NA	NA	1108	NM_001080926	16975	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0.095000	0.656716	
mm_52659.1	chr6	117900201	117900401	+	1	NA	NA	NA	-39	NM_001166432	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.020000	0.502488	
mm_11760.1	chr2	38513145	38513345	+	1	NA	NA	NA	1369	NM_001159631	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.015000	0.482587	-35(GTCTTTTAAAAA,-,0.00),-32(TTTTAAAAAGCC,+,0.00)
mm_27957.1	chr3	79852672	79852872	-	1	NA	NA	NA	-10110	NM_027495	70652	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.015000	0.547264	
mm_5788.1	chr1	51879334	51879534	-	1	NA	NA	NA	36544	NM_001290982	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.030000	0.597015	48(GTTTTTAGGGTG,+,0.00)
mm_111266.1	chr12	85270497	85270697	-	1	NA	NA	NA	2	NM_175337	217716	Mm.311981	NM_145446	ENSMUSG00000021245	Mlh3	AV125803|BB126472	mutL homolog 3	protein-coding	0.105000	0.636816	
mm_150456.1	chr19	38264466	38264666	+	1	NA	NA	NA	-216	NM_020278	56839	Mm.298251	NM_020278	ENSMUSG00000067242	Lgi1	BB130740	leucine-rich repeat LGI family, member 1	protein-coding	0.040000	0.502488	
mm_62054.1	chr7	92447373	92447573	+	1	NA	NA	NA	-113676	NM_025515	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.010000	0.487562	
mm_118485.1	chr14	12189914	12190114	+	1	NA	NA	NA	71	NM_001347593	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.015000	0.527363	
mm_18434.1	chr2	60842350	60842550	-	1	NA	NA	NA	38988	NM_001141932	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.000000	0.517413	
mm_42004.1	chr5	107905249	107905449	+	1	NA	NA	NA	4821	NM_016980	100503670	Mm.277897	NM_016980	ENSMUSG00000058558	Rpl5	U21RNA	ribosomal protein L5	protein-coding	0.010000	0.378109	10(TGCTTTATAAGA,-,0.00)
mm_138244.1	chr17	34564279	34564479	+	1	NA	NA	NA	84	NM_010929	18132	Mm.173813	NM_010929	ENSMUSG00000015468	Notch4	Int-3|Int3|N4	notch 4	protein-coding	0.020000	0.631841	
mm_1490.1	chr1	71733449	71733649	+	1	NA	NA	NA	80214	NR_040308	100042814	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	ENSMUSG00000073652|Gm15456|OTTMUSG00000022136	apolipoprotein L 7d	ncRNA	0.000000	0.412935	
mm_159520.1	chr4	61439716	61439916	-	1	NA	NA	NA	-112	NM_001200004	100039150	Mm.237772	NM_001200004	ENSMUSG00000096674	Mup15	Gm2068|Mup13	major urinary protein 15	protein-coding	0.010000	0.383085	84(GAGTATATAAGG,-,0.00)
mm_77154.1	chr8	111686519	111686719	-	1	NA	NA	NA	3055	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.025000	0.547264	
mm_9015.1	chr1	166126754	166126954	-	1	NA	NA	NA	1044	NM_001033344	240892	Mm.35315	NM_001033344	ENSMUSG00000026564	Dusp27	C130085G02Rik|Gm209	dual specificity phosphatase 27 (putative)	protein-coding	0.005000	0.562189	
mm_165881.1	chr4	41631596	41631796	+	1	NA	NA	NA	8606	NM_027147	69638	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.015000	0.616915	
mm_41421.1	chr5	90891142	90891342	+	1	NA	NA	NA	-3	NM_008176	14825	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.040000	0.592040	-35(GAGCATAAAAGG,-,0.00)
mm_150841.1	chr19	44954644	44954844	+	1	NA	NA	NA	23625	NM_001081225	226151	Mm.212609	NM_172638	ENSMUSG00000036097	Fam178a	3632432H19|6030443O07Rik|AU014917|Slf2	family with sequence similarity 178, member A	protein-coding	0.000000	0.343284	
mm_75353.1	chr8	44935063	44935263	-	1	NA	NA	NA	-15045	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.070000	0.671642	
mm_5466.1	chr1	36535642	36535842	-	1	NA	NA	NA	-3	NM_153502	78321	Mm.41421	NM_153502	ENSMUSG00000067653	Ankrd23	1110058D09Rik|2310041C05Rik|AI853437|Darp|MARP3	ankyrin repeat domain 23	protein-coding	0.010000	0.542289	-21(TCCCATAAAAGA,-,0.00)
mm_95526.1	chr11	52232078	52232278	+	1	NA	NA	NA	183	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.125000	0.721393	
mm_9023.1	chr1	166238644	166238844	-	1	NA	NA	NA	0	NM_175296	98558	Mm.26189	NM_175296	ENSMUSG00000040629	Mael	4933405K18Rik|AU019877	maelstrom spermatogenic transposon silencer	protein-coding	0.105000	0.711443	
mm_164254.1	chr15	98610138	98610338	-	1	NA	NA	NA	-2605	NM_007405	11512	Mm.157091	NM_007405	ENSMUSG00000022994	Adcy6	AC6|mKIAA0422	adenylate cyclase 6	protein-coding	0.015000	0.497512	
mm_25475.1	chr3	108911715	108911915	+	1	NA	NA	NA	-111	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.085000	0.661692	
mm_72491.1	chr8	83715133	83715333	+	1	NA	NA	NA	56	NM_197982	68278	Mm.28222	NM_197982	ENSMUSG00000005481	Ddx39	2610307C23Rik|BAT1|DDXL|Ddx39a|URH49	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39	protein-coding	0.095000	0.601990	-69(GTCCTTATAAAC,-,0.00),-67(CCTTATAAACCA,+,0.00)
mm_70454.1	chr8	11797330	11797530	+	1	NA	NA	NA	39100	NM_001113518	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.020000	0.557214	
mm_2017.1	chr1	87127866	87128066	+	1	NA	NA	NA	2958	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.020000	0.592040	
mm_46850.1	chr5	113644170	113644370	-	1	NA	NA	NA	6120	NM_008153	14747	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.020000	0.502488	
mm_156162.1	chrX	130005928	130006128	+	1	NA	NA	NA	256286	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.005000	0.358209	
mm_150058.1	chr19	29383563	29383763	+	1	NA	NA	NA	16225	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.025000	0.527363	
mm_54666.1	chr6	39206630	39206830	-	1	NA	NA	NA	43	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.160000	0.746269	
mm_97866.1	chr11	83118244	83118444	+	1	NA	NA	NA	1499	NM_011407	20555	Mm.10948	NM_011407	ENSMUSG00000078763	Slfn1	AV316259	schlafen 1	protein-coding	0.000000	0.432836	
mm_32761.1	chr4	116689801	116690001	+	1	NA	NA	NA	-3879	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.000000	0.343284	
mm_349.1	chr1	31222687	31222887	+	1	NA	NA	NA	-52	NM_029062	74708	Mm.246796	NM_029062	ENSMUSG00000026063	Pih1d3	4930521A18Rik	PIH1 domain containing 3	protein-coding	0.015000	0.492537	
mm_20895.1	chr2	148875370	148875570	-	1	NA	NA	NA	42	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.070000	0.611940	
mm_173068.1	chrX	134541541	134541741	-	1	NA	NA	NA	29	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.130000	0.726368	
mm_160587.1	chr9	65141222	65141422	+	1	NA	NA	NA	133	NM_008988	19289	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0.145000	0.781095	
mm_7990.1	chr1	134235047	134235247	-	1	NA	NA	NA	-291	NM_001291928	11539	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri	adenosine A1 receptor	protein-coding	0.030000	0.592040	
mm_97967.1	chr11	83771877	83772077	+	1	NA	NA	NA	18340	NM_145432	217026	Mm.117874	NM_145432	ENSMUSG00000000976	Heatr6	2700008B19Rik|BB135312|BB249351	HEAT repeat containing 6	protein-coding	0.010000	0.442786	
mm_100634.1	chr11	121717222	121717422	+	1	NA	NA	NA	14895	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.010000	0.398010	
mm_42983.1	chr5	123252012	123252212	+	1	NA	NA	NA	23922	NM_026000	67151	Mm.278997	NM_026000	ENSMUSG00000029440	Psmd9	1500011J20Rik|2610202L11Rik|Bridge-1|P27	proteasome (prosome, macropain) 26S subunit, non-ATPase, 9	protein-coding	0.055000	0.592040	
mm_104035.1	chr11	86268040	86268240	-	1	NA	NA	NA	-10572	NM_027421	70422	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0.000000	0.318408	
mm_83142.1	chr9	40455350	40455550	-	1	NA	NA	NA	314	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.100000	0.661692	-96(GCTTTAAGATGC,+,0.00)
mm_114171.1	chr13	55477484	55477684	+	1	NA	NA	NA	192	NR_105909	102465569		NR_105909	ENSMUSG00000098341	Mir6944	Gm27710|mmu-mir-6944	microRNA 6944	ncRNA	0.045000	0.616915	
mm_58458.1	chr7	3332834	3333034	+	1	NA	NA	NA	-3651	NM_133189	81904	Mm.214994	NM_133189	ENSMUSG00000069806	Cacng7	-	calcium channel, voltage-dependent, gamma subunit 7	protein-coding	0.150000	0.840796	
mm_79379.1	chr9	54764704	54764904	+	1	NA	NA	NA	56	NM_013496	12903	Mm.34797	NM_013496	ENSMUSG00000032291	Crabp1	AI326249|CRABP-I|Crabp-1|CrabpI|Rbp-5	cellular retinoic acid binding protein I	protein-coding	0.095000	0.716418	
mm_158056.1	chrX	101059528	101059728	-	1	NA	NA	NA	11	NM_031384	83558	Mm.134024	NM_031384	ENSMUSG00000009670	Tex11	4930565P14Rik|BB024231|ZIP4H	testis expressed gene 11	protein-coding	0.080000	0.577114	
mm_83816.1	chr9	53632599	53632799	-	1	NA	NA	NA	-22349	NM_144784	110446	Mm.293233	NM_144784	ENSMUSG00000032047	Acat1	6330585C21Rik|Acat	acetyl-Coenzyme A acetyltransferase 1	protein-coding	0.010000	0.472637	
mm_86201.1	chr9	119980373	119980573	-	1	NA	NA	NA	4185	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.005000	0.368159	
mm_16860.1	chr2	11655018	11655218	-	1	NA	NA	NA	12326	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.005000	0.427861	
mm_22175.1	chr2	173213708	173213908	-	1	NA	NA	NA	5114	NM_021394	58203	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.000000	0.393035	26(ATCTTTTAAAGC,-,0.00),27(TCTTTTAAAGCC,+,0.00)
mm_130340.1	chr15	97731287	97731487	-	1	NA	NA	NA	18	NM_001168693	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.025000	0.587065	14(GTCTTTAAAAGG,-,0.00),15(TCTTTAAAAGGA,+,0.00)
mm_154255.1	chr19	60766824	60767024	-	1	NA	NA	NA	7461	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.050000	0.542289	
mm_116092.1	chr13	28757761	28757961	-	1	NA	NA	NA	-46988	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.020000	0.477612	
mm_1392.1	chr1	67128828	67129028	+	1	NA	NA	NA	5901	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.328358	
mm_23687.1	chr3	68691292	68691492	+	1	NA	NA	NA	-32	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.055000	0.537313	
mm_125769.1	chr15	74563583	74563783	+	1	NA	NA	NA	47487	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0.155000	0.830846	
mm_77454.1	chr8	121882871	121883071	-	1	NA	NA	NA	24715	NM_011404	20539	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	0.030000	0.577114	
mm_15268.1	chr2	155133392	155133592	+	1	NA	NA	NA	11	NM_008395	16396	Mm.208286	NM_008395	ENSMUSG00000027598	Itch	6720481N21Rik|8030492O04Rik|A130065M08|AIP4|C230047C07Rik	itchy, E3 ubiquitin protein ligase	protein-coding	0.090000	0.641791	
mm_118967.1	chr14	27623569	27623769	+	1	NA	NA	NA	1262	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	0.015000	0.492537	
mm_29184.1	chr3	106542106	106542306	-	1	NA	NA	NA	-5592	NM_001286986	67171	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0.010000	0.373134	
mm_166299.1	chr5	104113929	104114129	-	1	NA	NA	NA	59	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding	0.045000	0.487562	-81(TGCTCTAAAGAG,-,0.00)
mm_124393.1	chr14	111674594	111674794	-	1	NA	NA	NA	-421	NM_198865	75409	Mm.235097	NM_029273	ENSMUSG00000033214	Slitrk5	2610019D03Rik	SLIT and NTRK-like family, member 5	protein-coding	0.040000	0.532338	
mm_60770.1	chr7	45554900	45555100	+	1	NA	NA	NA	72	NM_025330	66065	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.040000	0.597015	
mm_102135.1	chr11	53479875	53480075	-	1	NA	NA	NA	220	NM_183173	237761	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	0.105000	0.716418	
mm_144060.1	chr17	90747112	90747312	-	1	NA	NA	NA	46264	NR_136930	102634634		NR_136930		Gm20491	-	enolase 1, alpha non-neuron pseudogene	pseudo	0.005000	0.407960	
mm_144305.1	chr18	12504050	12504250	+	1	NA	NA	NA	-49	NM_001347461	16774	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0.020000	0.587065	
mm_97086.1	chr11	73138189	73138389	+	1	NA	NA	NA	5	NM_010353	14841	Mm.42045	NM_010353	ENSMUSG00000050107	Gsg2	Haspin	germ cell associated 2, haspin	protein-coding	0.165000	0.741294	
mm_113631.1	chr13	42049501	42049701	+	1	NA	NA	NA	-2420	NM_007772	110521	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.105000	0.751244	
mm_38223.1	chr4	135986916	135987116	-	1	NA	NA	NA	228	NM_025411	66193	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	0.150000	0.761194	
mm_141288.1	chr17	28066749	28066949	-	1	NA	NA	NA	13735	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.025000	0.577114	
mm_154993.1	chrX	38396787	38396987	+	1	NA	NA	NA	59573	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.030000	0.412935	
mm_20079.1	chr2	120609250	120609450	-	1	NA	NA	NA	8	NM_001159612	66606	Mm.428639	NM_025657	ENSMUSG00000027286	Lrrc57	2810002D13Rik|AA407405	leucine rich repeat containing 57	protein-coding	0.105000	0.666667	
mm_91684.1	chr10	43901632	43901832	-	1	NA	NA	NA	4	NM_001081054	76563	Mm.5904	NM_001081054	ENSMUSG00000019863	Qrsl1	2700038P16Rik|C80053|GatA	glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1	protein-coding	0.115000	0.636816	
mm_90402.1	chr10	127325984	127326184	+	1	NA	NA	NA	2357	NM_146011	216445	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.020000	0.557214	
mm_150173.1	chr19	32543366	32543566	+	1	NA	NA	NA	-52249	NM_001201470	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.000000	0.477612	
mm_10873.1	chr2	25225269	25225469	+	1	NA	NA	NA	-667	NM_146116	227613	Mm.227260	NM_146116	ENSMUSG00000036752	Tubb4b	4930542G03Rik|Tubb2c|Tubb2c1	tubulin, beta 4B class IVB	protein-coding	0.020000	0.656716	
mm_95908.1	chr11	58206006	58206206	+	1	NA	NA	NA	6550	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.015000	0.427861	
mm_70112.1	chr7	142669834	142670034	-	1	NA	NA	NA	-3118	NM_001315488	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.030000	0.537313	
mm_43685.1	chr5	138809768	138809968	+	1	NA	NA	NA	-10212	NM_001195128	384244	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0.025000	0.547264	
mm_105582.1	chr11	106688874	106689074	-	1	NA	NA	NA	26307	NM_001305158	18613	Mm.343951	NM_008816	ENSMUSG00000020717	Pecam1	C85791|Cd31|PECAM-1|Pecam	platelet/endothelial cell adhesion molecule 1	protein-coding	0.015000	0.462687	-34(GATCATAAAAGG,-,0.00)
mm_5885.1	chr1	53978512	53978712	-	1	NA	NA	NA	129188	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.010000	0.507463	
mm_147276.1	chr18	39185056	39185256	-	1	NA	NA	NA	192011	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.010000	0.547264	
mm_59713.1	chr7	28766200	28766400	+	1	NA	NA	NA	344	NM_001306222	18036	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	0.065000	0.601990	
mm_91208.1	chr10	21161475	21161675	-	1	NA	NA	NA	-591	NM_010848	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.020000	0.462687	
mm_96801.1	chr11	69981286	69981486	+	1	NA	NA	NA	-151	NM_018740	54351	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.090000	0.761194	
mm_77886.1	chr9	7282289	7282489	+	1	NA	NA	NA	9875	NM_008607	17386	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0.005000	0.308458	45(TTTTAAAAAGCC,+,0.00)
mm_80446.1	chr9	77976668	77976868	+	1	NA	NA	NA	59403	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.030000	0.487562	
mm_27305.1	chr3	49757146	49757346	-	1	NA	NA	NA	70	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding	0.040000	0.517413	
mm_21986.1	chr2	167589330	167589530	-	1	NA	NA	NA	42575	NM_001311146	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.020000	0.611940	
mm_140809.1	chr17	22314730	22314930	-	1	NA	NA	NA	46570	NM_176962	319615	Mm.442162	NM_176962	ENSMUSG00000033972	Zfp944	6330416L07Rik	zinc finger protein 944	protein-coding	0.065000	0.606965	
mm_143120.1	chr17	57210094	57210294	-	1	NA	NA	NA	7034	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.035000	0.587065	
mm_150171.1	chr19	32543230	32543430	+	1	NA	NA	NA	-52385	NM_001201470	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.015000	0.547264	
mm_28815.1	chr3	96259712	96259912	-	1	NA	NA	NA	3505	NM_033596	97122	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0.010000	0.497512	
mm_1389.1	chr1	67122759	67122959	+	1	NA	NA	NA	-168	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.000000	0.447761	
mm_87600.1	chr10	57650857	57651057	+	1	NA	NA	NA	-24	NM_001039050	18768	Mm.262135	NM_008863	ENSMUSG00000019876	Pkib	Pkibeta|Prkacn2	protein kinase inhibitor beta, cAMP dependent, testis specific	protein-coding	0.005000	0.467662	
mm_3924.1	chr1	162571535	162571735	+	1	NA	NA	NA	807	NM_001347125	53330	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e	vesicle-associated membrane protein 4	protein-coding	0.050000	0.412935	
mm_169866.1	chr16	34007387	34007587	-	1	NA	NA	NA	-40484	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.020000	0.427861	
mm_113742.1	chr13	44729507	44729707	+	1	NA	NA	NA	-1167	NM_021878	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.040000	0.562189	
mm_98033.1	chr11	85311307	85311507	+	1	NA	NA	NA	153	NM_016910	53892	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	0.130000	0.686567	
mm_98686.1	chr11	96298662	96298862	+	1	NA	NA	NA	-409	NM_008269	15414	Mm.215	NM_008269	ENSMUSG00000000690	Hoxb6	Hox-2.2	homeobox B6	protein-coding	0.030000	0.482587	
mm_73308.1	chr8	105170687	105170887	+	1	NA	NA	NA	113	NM_001161458	12400	Mm.2018	NM_022309	ENSMUSG00000031885	Cbfb	AI893578|PEA2|PEBP2b|Pebp2|Pebpb2	core binding factor beta	protein-coding	0.120000	0.756219	
mm_127309.1	chr15	100228155	100228355	+	1	NA	NA	NA	396	NM_007497	11908	Mm.676	NM_007497	ENSMUSG00000023027	Atf1	-	activating transcription factor 1	protein-coding	0.200000	0.845771	
mm_163002.1	chr11	33915278	33915478	-	1	NA	NA	NA	-47635	NM_031169	16533	Mm.6206	NM_031169	ENSMUSG00000020155	Kcnmb1	BKbeta1	potassium large conductance calcium-activated channel, subfamily M, beta member 1	protein-coding	0.020000	0.522388	
mm_23740.1	chr3	69222320	69222520	+	1	NA	NA	NA	1	NM_027843	71619	Mm.98122	NM_027843	ENSMUSG00000098207	Arl14	9130014L17Rik|Arf7	ADP-ribosylation factor-like 14	protein-coding	0.025000	0.402985	
mm_29645.1	chr3	121847094	121847294	-	1	NA	NA	NA	-31979	NM_008991	19299	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.000000	0.547264	
mm_99861.1	chr11	109365409	109365609	+	1	NA	NA	NA	-1855	NR_038097	100036768	Mm.467767	NR_038097	ENSMUSG00000056687	Gm11696	OTTMUSG00000003456	predicted gene 11696	ncRNA	0.010000	0.437811	11(CTCTTTTTAAAC,-,0.00),13(CTTTTTAAACAA,+,0.00)
mm_24313.1	chr3	89419086	89419286	+	1	NA	NA	NA	635	NM_011368	20416	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	0.040000	0.552239	
mm_18466.1	chr2	62394837	62395037	-	1	NA	NA	NA	17294	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.010000	0.432836	
mm_22715.1	chr3	19188191	19188391	+	1	NA	NA	NA	70	NR_045575	67472	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.055000	0.666667	
mm_154151.1	chr19	58454511	58454711	-	1	NA	NA	NA	787	NM_001285457	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.090000	0.691542	33(ACCCCTAAAAGC,-,0.00)
mm_81479.1	chr9	109945825	109946025	+	1	NA	NA	NA	14151	NM_008633	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.005000	0.388060	
mm_77735.1	chr8	126908091	126908291	-	1	NA	NA	NA	37730	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.040000	0.537313	
mm_98525.1	chr11	94990847	94991047	+	1	NA	NA	NA	-265	NM_172261	217124	Mm.229087	NM_172261	ENSMUSG00000038976	Ppp1r9b	SPL|Spn	protein phosphatase 1, regulatory subunit 9B	protein-coding	0.090000	0.701493	
mm_83296.1	chr9	43239703	43239903	-	1	NA	NA	NA	13	NM_178644	102644	Mm.246479	NM_178644	ENSMUSG00000032014	Oaf	AL024221|D130038B21Rik|D9Ucla1	out at first homolog	protein-coding	0.100000	0.636816	-93(GTCTCTTTAAGG,-,0.00)
mm_147193.1	chr18	37644058	37644258	-	1	NA	NA	NA	46	NM_175770	24074	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TATA-box binding protein associated factor 7	protein-coding	0.110000	0.606965	
mm_149914.1	chr19	26605094	26605294	+	1	NA	NA	NA	34	NM_011416	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.045000	0.517413	
mm_27145.1	chr3	32763966	32764166	-	1	NA	NA	NA	27003	NM_025316	66046	Mm.28058	NM_025316	ENSMUSG00000027673	Ndufb5	0610007D05Rik|AU015782|CI-SGDH|SGDH	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5	protein-coding	0.010000	0.547264	
mm_29001.1	chr3	101583723	101583923	-	1	NA	NA	NA	20884	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.015000	0.462687	
mm_79845.1	chr9	64811406	64811606	+	1	NA	NA	NA	495	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.120000	0.741294	
mm_138168.1	chr17	34264446	34264646	+	1	NA	NA	NA	1319	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.110000	0.626866	
mm_133293.1	chr16	77497566	77497766	+	1	NA	NA	NA	-101270	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.000000	0.174129	
mm_41249.1	chr5	88782455	88782655	+	1	NA	NA	NA	17542	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.015000	0.522388	
mm_81158.1	chr9	107296116	107296316	+	1	NA	NA	NA	-443	NM_001317354	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.010000	0.487562	
mm_109855.1	chr12	4768945	4769145	-	1	NA	NA	NA	222	NM_175431	207921	Mm.184898	NM_175431	ENSMUSG00000050545	Fam228b	A830093I24Rik	family with sequence similarity 228, member B	protein-coding	0.130000	0.736318	
mm_166177.1	chr5	30461861	30462061	-	1	NA	NA	NA	-29	NM_001100395	83762	Mm.244502	NM_031875	ENSMUSG00000062372	Otof	-	otoferlin	protein-coding	0.035000	0.621891	
mm_24831.1	chr3	95658619	95658819	+	1	NA	NA	NA	-2	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.130000	0.721393	
mm_43912.1	chr5	144277138	144277338	+	1	NA	NA	NA	177	NR_040432	100504231	Mm.441035	NR_040432	ENSMUSG00000086894	Gm15708	OTTMUSG00000025583	predicted gene 15708	ncRNA	0.010000	0.492537	
mm_128035.1	chr15	25363904	25364104	-	1	NA	NA	NA	49760	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.010000	0.393035	
mm_33600.1	chr4	132568531	132568731	+	1	NA	NA	NA	4564	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.005000	0.487562	
mm_82030.1	chr9	121937691	121937891	+	1	NA	NA	NA	516	NR_033553	69430	Mm.482910	NR_033553	ENSMUSG00000043773	1700048O20Rik	1700022O21Rik	RIKEN cDNA 1700048O20 gene	ncRNA	0.020000	0.522388	
mm_75890.1	chr8	70873389	70873589	-	1	NA	NA	NA	1	NM_026964	234388	Mm.295791	NM_026964	ENSMUSG00000007721	Ccdc124	1810023B24Rik	coiled-coil domain containing 124	protein-coding	0.130000	0.666667	
mm_78516.1	chr9	32926418	32926618	+	1	NA	NA	NA	2448	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.015000	0.442786	
mm_41066.1	chr5	87010098	87010298	+	1	NA	NA	NA	9338	NM_172881	243085	Mm.312095	NM_172881	ENSMUSG00000035811	Ugt2b35	C730031G17	UDP glucuronosyltransferase 2 family, polypeptide B35	protein-coding	0.005000	0.378109	
mm_1310.1	chr1	65027959	65028159	+	1	NA	NA	NA	4700	NM_027582	70861	Mm.18725	NM_027582	ENSMUSG00000025955	Akr1cl	4921521F21Rik|AI451536|AI503553	aldo-keto reductase family 1, member C-like	protein-coding	0.035000	0.502488	
mm_159752.1	chr5	86822727	86822927	+	1	NA	NA	NA	18337	NM_177680	231386	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.005000	0.402985	
mm_103413.1	chr11	75461055	75461255	-	1	NA	NA	NA	-384	NR_030711	100042498	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0.035000	0.512438	-53(GTCCTTAAAGGG,-,0.00),-51(CCTTAAAGGGCT,+,0.00)
mm_13632.1	chr2	113708572	113708772	+	1	NA	NA	NA	-122	NR_040614	75166	Mm.410811	NR_040614	ENSMUSG00000084798	4930533B01Rik	-	RIKEN cDNA 4930533B01 gene	ncRNA	0.000000	0.472637	
mm_130185.1	chr15	93520109	93520309	-	1	NA	NA	NA	75682	NM_001033217	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.020000	0.407960	
mm_121411.1	chr14	119458235	119458435	+	1	NA	NA	NA	-290892	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA	0.005000	0.353234	
mm_123208.1	chr14	59370448	59370648	-	1	NA	NA	NA	-5058	NM_199015	219132	Mm.479285	NM_199015	ENSMUSG00000068245	Phf11d	D14Ertd668e|Phf11|Phf11l	PHD finger protein 11D	protein-coding	0.060000	0.542289	
mm_76288.1	chr8	84200536	84200736	-	1	NA	NA	NA	-7882	NR_029740	387216		NR_029740	ENSMUSG00000065611	Mir23a	Mirn23a|mir-23a|mmu-mir-23a	microRNA 23a	ncRNA	0.005000	0.537313	
mm_162410.1	chr1	87127491	87127691	+	1	NA	NA	NA	2583	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.090000	0.641791	
mm_60666.1	chr7	45017768	45017968	+	1	NA	NA	NA	-139	NM_009101	20130	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.020000	0.517413	
mm_29417.1	chr3	108972718	108972918	-	1	NA	NA	NA	32261	NM_001078646	66715	Mm.158124	NM_025723	ENSMUSG00000045662	Henmt1	4921515J06Rik|Hen1|mHEN1	HEN1 methyltransferase homolog 1 (Arabidopsis)	protein-coding	0.020000	0.447761	
mm_61412.1	chr7	73556731	73556931	+	1	NA	NA	NA	1564	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.030000	0.398010	
mm_142314.1	chr17	42876456	42876656	-	1	NA	NA	NA	-132	NM_009847	12488	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.115000	0.741294	
mm_109584.1	chr12	112603966	112604166	+	1	NA	NA	NA	15282	NM_198411	70435	Mm.250193	NM_198411	ENSMUSG00000037679	Inf2	2610204M08Rik|AA589465|AW125550|EG629699	inverted formin, FH2 and WH2 domain containing	protein-coding	0.015000	0.582090	
mm_109342.1	chr12	109597391	109597591	+	1	NA	NA	NA	-2088	NM_184109	353326	Mm.23062	NM_184109	ENSMUSG00000085925	Rtl1	6430411K18Rik|Mar|Mart1|Mor1|Peg11	retrotransposon-like 1	protein-coding	0.010000	0.293532	-83(CGATTTTAAAGC,-,0.00)
mm_101987.1	chr11	50827560	50827760	-	1	NA	NA	NA	71	NM_013922	30944	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding	0.075000	0.651741	
mm_75473.1	chr8	48552796	48552996	-	1	NA	NA	NA	121794	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.005000	0.318408	
mm_13889.1	chr2	120033360	120033560	+	1	NA	NA	NA	27	NM_145378	211429	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	0.005000	0.542289	
mm_38214.1	chr4	135969397	135969597	-	1	NA	NA	NA	3097	NM_011942	26394	Mm.34302	NM_011942	ENSMUSG00000028670	Lypla2	LysoII	lysophospholipase 2	protein-coding	0.005000	0.601990	
mm_101214.1	chr11	20083884	20084084	-	1	NA	NA	NA	28967	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.005000	0.393035	
mm_82776.1	chr9	27029962	27030162	-	1	NA	NA	NA	32	NM_178027	69091	Mm.218717	NM_178027	ENSMUSG00000031988	Vps26b	1810012I05Rik|2310075A12Rik|AI848392	VPS26 retromer complex component B	protein-coding	0.115000	0.716418	
mm_10013.1	chr1	191907495	191907695	-	1	NA	NA	NA	-68	NR_030669	98736	Mm.379232	NM_001024489	ENSMUSG00000055833	1700034H15Rik	4930557M11Rik|BB016121	RIKEN cDNA 1700034H15 gene	ncRNA	0.135000	0.761194	
mm_129047.1	chr15	75238981	75239181	-	1	NA	NA	NA	-29340	NM_008530	17071	Mm.377095	NM_008530	ENSMUSG00000022583	Ly6f	-	lymphocyte antigen 6 complex, locus F	protein-coding	0.005000	0.487562	
mm_21467.1	chr2	160961276	160961476	-	1	NA	NA	NA	-49037	NM_182840	280635	Mm.330747	NM_182840	ENSMUSG00000050700	Emilin3	1110013O17Rik|EMILIN-3|EMILIN-5|EMILIN-T|Emilin5	elastin microfibril interfacer 3	protein-coding	0.015000	0.542289	
mm_166317.1	chr5	110446813	110447013	+	1	NA	NA	NA	1590	NM_001317042	381668	Mm.348782	NM_028596	ENSMUSG00000043323	Fbrsl1	2410025L10Rik|AI467568|Gm1049|Gm29766|mKIAA1545	fibrosin-like 1	protein-coding	0.010000	0.462687	
mm_49723.1	chr6	34606347	34606547	+	1	NA	NA	NA	7943	NM_001347100	109624	Mm.308134	NM_145575	ENSMUSG00000029761	Cald1	4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik	caldesmon 1	protein-coding	0.005000	0.353234	
mm_160682.1	chr10	17723355	17723555	+	1	NA	NA	NA	227	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.090000	0.676617	
mm_29708.1	chr3	123508236	123508436	-	1	NA	NA	NA	0	NR_028574	69895	Mm.260791	NR_028574	ENSMUSG00000104960	Snhg8	1110065M07Rik|2010109N14Rik	small nucleolar RNA host gene 8	ncRNA	0.085000	0.601990	-33(GGCTATAAAAGC,-,0.00)
mm_103747.1	chr11	80377900	80378100	-	1	NA	NA	NA	15	NM_027472	70591	Mm.86860	NM_027472	ENSMUSG00000057181	5730455P16Rik	-	RIKEN cDNA 5730455P16 gene	protein-coding	0.095000	0.671642	
mm_24194.1	chr3	88607552	88607752	+	1	NA	NA	NA	-8555	NM_001198911	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.030000	0.592040	
mm_29534.1	chr3	116662478	116662678	-	1	NA	NA	NA	99	NM_008246	15247	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	0.145000	0.746269	
mm_94784.1	chr11	21976471	21976671	+	1	NA	NA	NA	25080	NM_011023	18423	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.000000	0.502488	
mm_170138.1	chr17	39847866	39848066	+	1	NA	NA	NA	4969	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.085000	0.592040	
mm_150950.1	chr19	46328127	46328327	+	1	NA	NA	NA	43	NM_133694	68431	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	0.055000	0.592040	
mm_154899.1	chrX	20925433	20925633	+	1	NA	NA	NA	-4615	NM_013680	20964	Mm.439844	NM_013680	ENSMUSG00000037217	Syn1	Syn-1|Syn1-S	synapsin I	protein-coding	0.005000	0.422886	
mm_166868.1	chr7	24709125	24709325	+	1	NA	NA	NA	-34	NM_199150	232972	Mm.293074	NM_199150	ENSMUSG00000045587	BC049730	Lypd10	cDNA sequence BC049730	protein-coding	0.020000	0.492537	
mm_40191.1	chr5	36484529	36484729	+	1	NA	NA	NA	41	NM_025725	66717	Mm.42368	NM_025725	ENSMUSG00000050677	Ccdc96	4921513E08Rik	coiled-coil domain containing 96	protein-coding	0.095000	0.671642	
mm_131018.1	chr15	103563319	103563519	-	1	NA	NA	NA	1662	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.000000	0.487562	
mm_69204.1	chr7	127406687	127406887	-	1	NA	NA	NA	35	NM_146203	233893	Mm.297097	NM_146203	ENSMUSG00000045757	Zfp764	8030466O12Rik	zinc finger protein 764	protein-coding	0.030000	0.512438	88(CCTTTTCAGCCC,+,0.00)
mm_102893.1	chr11	69418041	69418241	-	1	NA	NA	NA	-4466	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.070000	0.641791	
mm_127064.1	chr15	97373277	97373477	+	1	NA	NA	NA	-126090	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.025000	0.537313	
mm_77554.1	chr8	123284043	123284243	-	1	NA	NA	NA	-29921	NM_028200	72325	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	0.025000	0.547264	
mm_56364.1	chr6	93912505	93912705	-	1	NA	NA	NA	358	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.030000	0.582090	
mm_131138.1	chr16	6348568	6348768	+	1	NA	NA	NA	373081	NR_045799	68238	Mm.434605	NR_045799	ENSMUSG00000101481	1700123O21Rik	-	RIKEN cDNA 1700123O21 gene	ncRNA	0.045000	0.606965	
mm_4271.1	chr1	171559071	171559271	+	1	NA	NA	NA	-22	NM_018729	18106	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0.015000	0.542289	
mm_45972.1	chr5	90469480	90469680	-	1	NA	NA	NA	8710	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.457711	
mm_67272.1	chr7	75782003	75782203	-	1	NA	NA	NA	-66235	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.080000	0.592040	
mm_684.1	chr1	40515350	40515550	+	1	NA	NA	NA	88	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.005000	0.427861	
mm_20632.1	chr2	131994527	131994727	-	1	NA	NA	NA	35361	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.005000	0.422886	
mm_42594.1	chr5	117397420	117397620	+	1	NA	NA	NA	-8497	NM_028128	72151	Mm.27997	NM_028128	ENSMUSG00000029363	Rfc5	2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5	replication factor C (activator 1) 5	protein-coding	0.010000	0.522388	-46(GACCCTTTAAGG,-,0.00),-44(CCCTTTAAGGAG,+,0.00)
mm_77960.1	chr9	7692253	7692453	+	1	NA	NA	NA	12	NM_001319986	17393	Mm.4825	NM_010810	ENSMUSG00000018623	Mmp7	MAT|MMP-7	matrix metallopeptidase 7	protein-coding	0.030000	0.482587	
mm_77851.1	chr9	5306051	5306251	+	1	NA	NA	NA	-2698	NM_007609	12363	Mm.1569	NM_007609	ENSMUSG00000033538	Casp4	CASP-11|CASP-4|Casp11|Caspl|ich-3	caspase 4, apoptosis-related cysteine peptidase	protein-coding	0.000000	0.388060	
mm_116103.1	chr13	28885258	28885458	-	1	NA	NA	NA	64	NR_045054	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.050000	0.616915	
mm_81786.1	chr9	114756738	114756938	+	1	NA	NA	NA	25155	NM_133978	102545	Mm.35600	NM_133978	ENSMUSG00000032436	Cmtm7	AI481279|Cklfsf7|LNV	CKLF-like MARVEL transmembrane domain containing 7	protein-coding	0.000000	0.497512	
mm_79415.1	chr9	55209183	55209383	+	1	NA	NA	NA	348	NM_028049	71999	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	0.090000	0.686567	
mm_18691.1	chr2	71537580	71537780	-	1	NA	NA	NA	211	NR_002854	111970	Mm.4543	NR_002854		Dlx1as	Dix1as|Dlx1os	distal-less homeobox 1, antisense	ncRNA	0.015000	0.363184	
mm_159929.1	chr6	63256803	63257003	+	1	NA	NA	NA	46	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.050000	0.517413	
mm_29216.1	chr3	107066613	107066813	-	1	NA	NA	NA	27209	NR_033498	229694	Mm.347584	NM_173787	ENSMUSG00000056145	AI504432	A230102G19	expressed sequence AI504432	ncRNA	0.005000	0.383085	
mm_81438.1	chr9	109096561	109096761	+	1	NA	NA	NA	1225	NM_172775	235611	Mm.53862	NM_172775	ENSMUSG00000053646	Plxnb1	2900002G15Rik|AU042020|mKIAA0407	plexin B1	protein-coding	0.025000	0.507463	
mm_122430.1	chr14	45041110	45041310	-	1	NA	NA	NA	53099	NM_008964	19217	Mm.4630	NM_008964	ENSMUSG00000037759	Ptger2	EP2|Ptgerep2	prostaglandin E receptor 2 (subtype EP2)	protein-coding	0.005000	0.427861	
mm_55837.1	chr6	83155708	83155908	-	1	NA	NA	NA	571	NM_023790	75659	Mm.130665	NM_023790	ENSMUSG00000030032	Wdr54	1700030E05Rik	WD repeat domain 54	protein-coding	0.055000	0.601990	
mm_169761.1	chr15	97167154	97167354	-	1	NA	NA	NA	-79853	NM_172293	239647	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	0.025000	0.502488	
mm_7009.1	chr1	86488754	86488954	-	1	NA	NA	NA	-37882	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.005000	0.467662	
mm_26583.1	chr3	150049628	150049828	+	1	NA	NA	NA	774991	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.005000	0.263682	-58(CAATTTTAAAGG,-,0.00)
mm_52561.1	chr6	116208023	116208223	+	1	NA	NA	NA	90	NM_026585	28006	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	0.065000	0.597015	
mm_162164.1	chrX	95733163	95733363	-	1	NA	NA	NA	2	NM_029590	76386	Mm.443249	NM_029590		1700010D01Rik	-	RIKEN cDNA 1700010D01 gene	protein-coding	0.005000	0.507463	
mm_75392.1	chr8	45999611	45999811	-	1	NA	NA	NA	139	NM_001039562	654824	Mm.334517	NM_001039562	ENSMUSG00000050914	Ankrd37	-	ankyrin repeat domain 37	protein-coding	0.055000	0.606965	
mm_142600.1	chr17	46763657	46763857	-	1	NA	NA	NA	-45	NM_011195	19208	Mm.215173	NM_011195	ENSMUSG00000036858	Ptcra	gp33|pT-alpha|pT-alpha-TCR|pT[a]|pTa|pTalpha	pre T cell antigen receptor alpha	protein-coding	0.000000	0.636816	
mm_106078.1	chr11	116174612	116174812	-	1	NA	NA	NA	-6534	NM_172571	217335	Mm.35241	NM_172571	ENSMUSG00000020776	Fbf1	1110033G01Rik|5930413D20|mKIAA1863	Fas (TNFRSF6) binding factor 1	protein-coding	0.035000	0.512438	
mm_99152.1	chr11	100575791	100575991	+	1	NA	NA	NA	0	NM_001146318	12799	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.005000	0.542289	
mm_147740.1	chr18	61108512	61108712	-	1	NA	NA	NA	3040	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.030000	0.631841	
mm_170126.1	chr17	39846988	39847188	+	1	NA	NA	NA	4091	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.095000	0.577114	
mm_91884.1	chr10	59875486	59875686	-	1	NA	NA	NA	-4005	NM_019965	56709	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.000000	0.507463	
mm_88002.1	chr10	67096230	67096430	+	1	NA	NA	NA	658	NM_001204915	28193	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.120000	0.706468	
mm_120148.1	chr14	60485100	60485300	+	1	NA	NA	NA	106914	NM_001164705	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.015000	0.527363	
mm_53546.1	chr6	136827735	136827935	+	1	NA	NA	NA	381	NM_021714	60321	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	0.145000	0.736318	
mm_171919.1	chr5	5782588	5782788	-	1	NA	NA	NA	-33371	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.055000	0.572139	-11(CTCTCTATGAGG,-,0.00)
mm_54265.1	chr6	28421478	28421678	-	1	NA	NA	NA	146	NM_028900	74375	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	0.050000	0.646766	
mm_106810.1	chr12	6126244	6126444	+	1	NA	NA	NA	749842	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	0.010000	0.422886	
mm_24907.1	chr3	96219766	96219966	+	1	NA	NA	NA	-50	NM_178213	621893		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	0.035000	0.492537	
mm_127789.1	chr15	3582044	3582244	-	1	NA	NA	NA	-302	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.040000	0.542289	
mm_39743.1	chr5	29569343	29569543	+	1	NA	NA	NA	201	NM_133907	100763	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	0.160000	0.781095	
mm_62017.1	chr7	91508546	91508746	+	1	NA	NA	NA	417860	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.020000	0.432836	
mm_24159.1	chr3	88513956	88514156	+	1	NA	NA	NA	-10704	NM_001002011	16905	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.020000	0.517413	
mm_159559.1	chr4	107968079	107968279	+	1	NA	NA	NA	-155	NM_146255	242607	Mm.192040	NM_146255	ENSMUSG00000008932	Slc1a7	A930031E15Rik|Eaat5	solute carrier family 1 (glutamate transporter), member 7	protein-coding	0.025000	0.512438	
mm_90937.1	chr10	12922956	12923156	-	1	NA	NA	NA	71	NR_038027	320273	Mm.417706	NR_038027	ENSMUSG00000097378	B230208H11Rik	-	RIKEN cDNA B230208H11 gene	ncRNA	0.085000	0.626866	
mm_7144.1	chr1	91249958	91250158	-	1	NA	NA	NA	-261	NM_026454	67921	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0.060000	0.552239	
mm_38447.1	chr4	139993918	139994118	-	1	NA	NA	NA	-25992	NM_173427	242721	Mm.60400	NM_173427	ENSMUSG00000078234	Klhdc7a	B230308G19Rik	kelch domain containing 7A	protein-coding	0.005000	0.457711	
mm_35864.1	chr4	49481103	49481303	-	1	NA	NA	NA	25355	NM_007519	12012	Mm.2859	NM_007519	ENSMUSG00000039653	Baat	AI118337|AI158864|BAT	bile acid-Coenzyme A: amino acid N-acyltransferase	protein-coding	0.000000	0.457711	
mm_55284.1	chr6	54531002	54531202	-	1	NA	NA	NA	35280	NM_027268	69938	Mm.41557	NM_027268	ENSMUSG00000019124	Scrn1	2810019K23Rik|6330535A03Rik|AI852905|SES1|mKIAA0193	secernin 1	protein-coding	0.010000	0.472637	
mm_7855.1	chr1	132391714	132391914	-	1	NA	NA	NA	-428	NM_178874	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.140000	0.776119	
mm_82821.1	chr9	31030197	31030397	-	1	NA	NA	NA	-347	NM_001115130	235132	Mm.239355	NM_172765	ENSMUSG00000047412	Zbtb44	6030404E16Rik|Btbd15|E230011F09	zinc finger and BTB domain containing 44	protein-coding	0.105000	0.676617	
mm_134393.1	chr16	17467656	17467856	-	1	NA	NA	NA	15771	NM_007764	12929	Mm.21048	NM_007764	ENSMUSG00000006134	Crkl	1110025F07Rik|AA589403|AI325100|Crkol	v-crk avian sarcoma virus CT10 oncogene homolog-like	protein-coding	0.000000	0.427861	0(GGCCATTAAAGG,-,0.00),2(CCATTAAAGGGC,+,0.00)
mm_31295.1	chr4	45972300	45972500	+	1	NA	NA	NA	103	NM_146142	100121	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.140000	0.776119	
mm_13221.1	chr2	97125021	97125221	+	1	NA	NA	NA	-342536	NM_001289744	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.000000	0.338308	
mm_155171.1	chrX	53434862	53435062	+	1	NA	NA	NA	44	NR_034074	69501	Mm.63828	NM_175147	ENSMUSG00000060967	Etd	1700030K02Rik	embryonic testis differentiation	ncRNA	0.020000	0.482587	
mm_61848.1	chr7	88297055	88297255	+	1	NA	NA	NA	19070	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.005000	0.467662	
mm_166961.1	chr7	44480256	44480456	+	1	NA	NA	NA	-4161	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.497512	
mm_94046.1	chr10	128179884	128180084	-	1	NA	NA	NA	313	NM_001039080	56516	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.000000	0.462687	
mm_125028.1	chr15	25752779	25752979	+	1	NA	NA	NA	-90419	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.005000	0.422886	
mm_71929.1	chr8	70274645	70274845	+	1	NA	NA	NA	-8254	NM_011984	26558	Mm.388127	NM_011984	ENSMUSG00000003573	Homer3	AW146114	homer scaffolding protein 3	protein-coding	0.005000	0.517413	
mm_109631.1	chr12	112767504	112767704	+	1	NA	NA	NA	6949	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.040000	0.611940	
mm_44185.1	chr5	151400026	151400226	+	1	NA	NA	NA	-6378	NR_131166	100042166	Mm.443286	NR_131166	ENSMUSG00000097321	Gm3704	-	predicted gene 3704	ncRNA	0.015000	0.477612	
mm_22515.1	chr3	7618786	7618986	+	1	NA	NA	NA	-5126	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.010000	0.333333	
mm_39726.1	chr5	28317788	28317988	+	1	NA	NA	NA	699	NM_028234	381626	Mm.304075	NM_028234	ENSMUSG00000048271	Rbm33	3200001K10Rik|6430512A10Rik|AA386890|Prr8	RNA binding motif protein 33	protein-coding	0.035000	0.333333	
mm_45512.1	chr5	72504183	72504383	-	1	NA	NA	NA	-75	NM_016869	53419	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.045000	0.592040	
mm_166705.1	chr6	115932065	115932265	+	1	NA	NA	NA	238	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.055000	0.587065	
mm_39409.1	chr5	14521611	14521811	+	1	NA	NA	NA	6793	NM_001110796	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.000000	0.577114	
mm_134966.1	chr16	31948387	31948587	-	1	NA	NA	NA	34	NR_027897	106264	Mm.347369	NM_025320	ENSMUSG00000107002	0610012G03Rik	AI839730	RIKEN cDNA 0610012G03 gene	ncRNA	0.140000	0.711443	
mm_162081.1	chrX	26545434	26545634	-	1	NA	NA	NA	31	NM_001136476	664829	Mm.489202	NM_001136476	ENSMUSG00000095063	Slx	EG664958|Xmr	Sycp3 like X-linked	protein-coding	0.010000	0.477612	
mm_116433.1	chr13	42052842	42053042	-	1	NA	NA	NA	921	NM_007772	110521	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.035000	0.492537	
mm_149151.1	chr19	9010725	9010925	+	1	NA	NA	NA	-7079	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.005000	0.432836	59(GGACATTAAAGC,-,0.00)
mm_83704.1	chr9	50693707	50693907	-	1	NA	NA	NA	-34027	NM_145614	235339	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	0.035000	0.527363	
mm_880.1	chr1	52499940	52500140	+	1	NA	NA	NA	408	NM_008667	17936	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	0.090000	0.636816	
mm_95752.1	chr11	54902753	54902953	+	1	NA	NA	NA	-1	NM_001329860	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.070000	0.611940	
mm_45952.1	chr5	90366457	90366657	-	1	NA	NA	NA	-372	NM_198010	81702	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0.145000	0.706468	
mm_40108.1	chr5	34761721	34761921	+	1	NA	NA	NA	81	NM_010414	15194	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	0.090000	0.651741	
mm_41540.1	chr5	92859358	92859558	+	1	NA	NA	NA	-38535	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.005000	0.432836	
mm_111239.1	chr12	84772959	84773159	-	1	NA	NA	NA	53	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.090000	0.651741	
mm_65726.1	chr7	28380918	28381118	-	1	NA	NA	NA	-1790	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.025000	0.532338	
mm_115158.1	chr13	107063596	107063796	+	1	NA	NA	NA	41126	NR_015471	100040322	Mm.133867	NR_015471		3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.015000	0.427861	
mm_104098.1	chr11	86694977	86695177	-	1	NA	NA	NA	10996	NM_001098810	217057	Mm.24868	NM_175004	ENSMUSG00000072582	Ptrh2	A230072I16Rik|Bit1|CGI-147	peptidyl-tRNA hydrolase 2	protein-coding	0.005000	0.333333	80(GAGTATAAAAGG,-,0.00)
mm_102489.1	chr11	60222763	60222963	-	1	NA	NA	NA	-2236	NM_001313979	20787	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP-1a|SREBP1|SREBP1c|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.130000	0.716418	
mm_30017.1	chr3	135665190	135665390	-	1	NA	NA	NA	26257	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.005000	0.393035	
mm_170468.1	chr18	9916769	9916969	+	1	NA	NA	NA	-41311	NM_153552	225160	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	0.025000	0.442786	
mm_2792.1	chr1	130851314	130851514	+	1	NA	NA	NA	-14363	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.000000	0.427861	
mm_170706.1	chr2	140151937	140152137	+	1	NA	NA	NA	18521	NM_001081090	66580	Mm.21228	NM_001081090	ENSMUSG00000045624	Esf1	2610101J03Rik|ABTAP|AW545818|C79684	ESF1 nucleolar pre-rRNA processing protein homolog	protein-coding	0.005000	0.393035	
mm_28237.1	chr3	88456319	88456519	-	1	NA	NA	NA	-658	NM_013658	20351	Mm.439752	NM_013658	ENSMUSG00000028064	Sema4a	AI132332|SemB|Semab	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A	protein-coding	0.025000	0.517413	
mm_137818.1	chr17	30135083	30135283	+	1	NA	NA	NA	121352	NR_105839	102465223		NR_105839	ENSMUSG00000098522	Mir6412	Gm27364|mmu-mir-6412	microRNA 6412	ncRNA	0.005000	0.383085	
mm_120696.1	chr14	70890189	70890389	+	1	NA	NA	NA	182	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.045000	0.452736	
mm_72965.1	chr8	92840129	92840329	+	1	NA	NA	NA	12932	NM_008610	17390	Mm.29564	NM_008610	ENSMUSG00000031740	Mmp2	Clg4a|GelA|MMP-2	matrix metallopeptidase 2	protein-coding	0.005000	0.477612	
mm_86278.1	chr9	121839332	121839532	-	1	NA	NA	NA	29	NM_028384	100502861	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	0.115000	0.651741	
mm_43638.1	chr5	138229742	138229942	+	1	NA	NA	NA	3938	NM_001013773	381680	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0.005000	0.402985	
mm_53075.1	chr6	124935244	124935444	+	1	NA	NA	NA	3956	NM_001170341	30853	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.050000	0.611940	
mm_133938.1	chr16	3895479	3895679	-	1	NA	NA	NA	10960	NM_001290689	74763	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|Nat15	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0.015000	0.512438	
mm_110159.1	chr12	26469142	26469342	-	1	NA	NA	NA	27	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.080000	0.656716	
mm_144438.1	chr18	21651337	21651537	+	1	NA	NA	NA	-128	NM_001271580	74644	Mm.329311	NM_001271580		4930426D05Rik	-	RIKEN cDNA 4930426D05 gene	protein-coding	0.040000	0.641791	
mm_73117.1	chr8	94749927	94750127	+	1	NA	NA	NA	4343	NM_009137	20299	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	0.010000	0.572139	
mm_25452.1	chr3	108383758	108383958	+	1	NA	NA	NA	20	NM_019976	56742	Mm.389499	NM_019976	ENSMUSG00000068744	Psrc1	5430413I02Rik|AL033312|Dda3	proline/serine-rich coiled-coil 1	protein-coding	0.075000	0.597015	
mm_53841.1	chr6	148355018	148355218	+	1	NA	NA	NA	462	NR_003634	66184	Mm.391542	NM_025405	ENSMUSG00000063171	Rps4l	1110033J19Rik|AA407494|Rps4y2	ribosomal protein S4-like	pseudo	0.105000	0.606965	
mm_44116.1	chr5	149439614	149439814	+	1	NA	NA	NA	54	NM_001310765	75860	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	0.070000	0.606965	
mm_14715.1	chr2	143915205	143915405	+	1	NA	NA	NA	-26	NM_019771	56431	Mm.28919	NM_019771	ENSMUSG00000015932	Dstn	2610043P17Rik|ADF|AU042046|Dsn|corn1|sid23p	destrin	protein-coding	0.070000	0.671642	
mm_30361.1	chr3	151835873	151836073	-	1	NA	NA	NA	1555	NM_008966	19220	Mm.331442	NM_008966	ENSMUSG00000028036	Ptgfr	AI957154|PGF|fp	prostaglandin F receptor	protein-coding	0.005000	0.487562	
mm_85744.1	chr9	108567306	108567506	-	1	NA	NA	NA	-64	NM_023247	66706	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	0.090000	0.616915	
mm_92662.1	chr10	80419592	80419792	-	1	NA	NA	NA	-12871	NM_025650	66594	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0.015000	0.572139	
mm_172137.1	chr6	35395505	35395705	-	1	NA	NA	NA	64759	NR_040526	73409	Mm.69443	NR_040526	ENSMUSG00000107341	1700065J11Rik	-	RIKEN cDNA 1700065J11 gene	ncRNA	0.070000	0.651741	
mm_6208.1	chr1	66816804	66817004	-	1	NA	NA	NA	691	NM_177645	68691	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.060000	0.606965	
mm_41033.1	chr5	86071477	86071677	+	1	NA	NA	NA	-169	NM_019992	56792	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.010000	0.422886	11(GCCTTTTAAAAG,-,0.00),12(CCTTTTAAAAGT,+,0.00)
mm_88437.1	chr10	77535856	77536056	+	1	NA	NA	NA	5608	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.005000	0.407960	
mm_24426.1	chr3	90537216	90537416	+	1	NA	NA	NA	-3907	NM_026416	67860	Mm.331185	NM_026416	ENSMUSG00000074457	S100a16	2300002L21Rik|AI325039|AI663996|DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding	0.010000	0.641791	
mm_171402.1	chr4	123718061	123718261	-	1	NA	NA	NA	0	NR_002445	170658	Mm.375824	NR_002445		BC002163	-	NADH dehydrogenase Fe-S protein 5 pseudogene	pseudo	0.095000	0.611940	
mm_63021.1	chr7	121034461	121034661	+	1	NA	NA	NA	116	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.105000	0.726368	
mm_128794.1	chr15	66812543	66812743	-	1	NA	NA	NA	19186	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.010000	0.567164	
mm_87502.1	chr10	52233542	52233742	+	1	NA	NA	NA	23	NM_025705	66686	Mm.62982	NM_025705	ENSMUSG00000019891	Dcbld1	4631413K11Rik	discoidin, CUB and LCCL domain containing 1	protein-coding	0.140000	0.805970	
mm_27110.1	chr3	30793119	30793319	-	1	NA	NA	NA	343	NM_027016	69276	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	0.150000	0.746269	
mm_113154.1	chr13	24801104	24801304	+	1	NA	NA	NA	-453	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.115000	0.681592	
mm_131981.1	chr16	25024073	25024273	+	1	NA	NA	NA	-35466	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.010000	0.363184	
mm_132430.1	chr16	35775693	35775893	+	1	NA	NA	NA	5407	NM_175111	66667	Mm.45272	NM_175111	ENSMUSG00000022849	Hspbap1	3830421G21Rik	Hspb associated protein 1	protein-coding	0.005000	0.328358	
mm_122009.1	chr14	26981528	26981728	-	1	NA	NA	NA	-11077	NM_145221	72993	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	0.005000	0.532338	-33(CACTATAAAAGG,-,0.00)
mm_132045.1	chr16	28928946	28929146	+	1	NA	NA	NA	652	NM_177718	239796	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.105000	0.656716	
mm_30565.1	chr4	3790196	3790396	+	1	NA	NA	NA	45359	NM_026147	67427	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.005000	0.353234	54(GCTTTAAAACAC,+,0.00)
mm_117095.1	chr13	59822564	59822764	-	1	NA	NA	NA	483	NM_153538	214290	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.040000	0.587065	
mm_37862.1	chr4	132303096	132303296	-	1	NA	NA	NA	160	NM_001081651	242681	Mm.331927	NM_001081651	ENSMUSG00000089687	Rab42	9530096D07Rik|Rab42-ps	RAB42, member RAS oncogene family	protein-coding	0.110000	0.681592	
mm_117897.1	chr13	99425128	99425328	-	1	NA	NA	NA	-12402	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.010000	0.447761	
mm_45486.1	chr5	71095714	71095914	-	1	NA	NA	NA	35	NM_008066	14395	Mm.5304	NM_008066	ENSMUSG00000000560	Gabra2	C630048P16Rik|Gabra-2	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2	protein-coding	0.095000	0.666667	
mm_87194.1	chr10	39527482	39527682	+	1	NA	NA	NA	-85352	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.020000	0.447761	-71(ATTTTTAAAGAC,+,0.00)
mm_139448.1	chr17	55446148	55446348	+	1	NA	NA	NA	531	NM_172829	240119	Mm.311687	NM_172829	ENSMUSG00000024172	St6gal2	C230064G14Rik|St6galII|mKIAA1877	beta galactoside alpha 2,6 sialyltransferase 2	protein-coding	0.035000	0.597015	
mm_116457.1	chr13	43304024	43304224	-	1	NA	NA	NA	48	NM_001033399	328232	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	0.135000	0.726368	
mm_37419.1	chr4	122869650	122869850	-	1	NA	NA	NA	16307	NM_007598	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.015000	0.492537	
mm_104161.1	chr11	87320302	87320502	-	1	NA	NA	NA	38592	NM_177167	320472	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	0.015000	0.303483	
mm_56793.1	chr6	116647693	116647893	-	1	NA	NA	NA	-1746	NR_106010	102466793		NR_106010	ENSMUSG00000098334	Mir7043	Gm27776|mmu-mir-7043	microRNA 7043	ncRNA	0.020000	0.547264	
mm_144453.1	chr18	23333625	23333825	+	1	NA	NA	NA	23705	NM_001285813	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.005000	0.388060	
mm_118.1	chr1	9797718	9797918	+	1	NA	NA	NA	-312	NM_133220	170755	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.050000	0.532338	-37(GCCCAGAAAAAG,-,0.00)
mm_11231.1	chr2	29802638	29802838	+	1	NA	NA	NA	58	NM_011989	26569	Mm.330113	NM_011989	ENSMUSG00000059316	Slc27a4	BB144259|FATP4	solute carrier family 27 (fatty acid transporter), member 4	protein-coding	0.095000	0.736318	
mm_70125.1	chr7	143087035	143087235	-	1	NA	NA	NA	7507	NM_020277	56843	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	0.010000	0.646766	
mm_119331.1	chr14	39220040	39220240	+	1	NA	NA	NA	-252289	NR_131973	432842	Mm.352566	NR_131973		LOC432842	-	uncharacterized LOC432842	ncRNA	0.005000	0.472637	
mm_117306.1	chr13	67399651	67399851	-	1	NA	NA	NA	16	NM_001080941	72807	Mm.303790	NM_001080941	ENSMUSG00000078994	Zfp429	2810487A22Rik|AI929863|Rsl2	zinc finger protein 429	protein-coding	0.035000	0.547264	
mm_33891.1	chr4	136180701	136180901	+	1	NA	NA	NA	19	NM_001305399	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.025000	0.567164	
mm_54833.1	chr6	42585904	42586104	-	1	NA	NA	NA	11368	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.303483	
mm_37920.1	chr4	132789803	132790003	-	1	NA	NA	NA	6461	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.010000	0.577114	
mm_51513.1	chr6	83137742	83137942	+	1	NA	NA	NA	758	NM_009106	20166	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0.020000	0.597015	
mm_52776.1	chr6	121226231	121226431	+	1	NA	NA	NA	15597	NM_017379	53857	Mm.32884	NM_017379	ENSMUSG00000030137	Tuba8	-	tubulin, alpha 8	protein-coding	0.010000	0.502488	
mm_169704.1	chr15	75086894	75087094	+	1	NA	NA	NA	24955	NM_001099217	100041546	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0.005000	0.383085	6(AGCCTTAAAAAG,-,0.00),8(CCTTAAAAAGCA,+,0.00)
mm_93524.1	chr10	115314781	115314981	-	1	NA	NA	NA	710	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.050000	0.507463	
mm_106339.1	chr11	118393051	118393251	-	1	NA	NA	NA	8780	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.020000	0.557214	
mm_78690.1	chr9	40802541	40802741	+	1	NA	NA	NA	1368	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.015000	0.393035	
mm_73404.1	chr8	105900344	105900544	+	1	NA	NA	NA	-30	NM_173432	244631	Mm.27627	NM_173432	ENSMUSG00000048310	Pskh1	AW539964|E130013P03Rik|b2b1230Clo	protein serine kinase H1	protein-coding	0.135000	0.706468	
mm_147419.1	chr18	46179844	46180044	-	1	NA	NA	NA	18874	NM_001170855	28105	Mm.277382	NM_178872	ENSMUSG00000033949	Trim36	D18Wsu100e|haprin	tripartite motif-containing 36	protein-coding	0.010000	0.482587	
mm_2048.1	chr1	87360179	87360379	+	1	NA	NA	NA	33281	NM_001110212	227331	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	0.000000	0.422886	
mm_1610.1	chr1	74385392	74385592	+	1	NA	NA	NA	-6117	NM_153088	227292	Mm.165042	NM_153088	ENSMUSG00000026176	Ctdsp1	GIP|NLIIF|Nif3|SCP1	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1	protein-coding	0.040000	0.601990	-38(TCTTATATGGGC,+,0.00)
mm_138836.1	chr17	39848408	39848608	+	1	NA	NA	NA	5511	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.155000	0.701493	
mm_100817.1	chr11	5149978	5150178	-	1	NA	NA	NA	2144	NM_080595	140703	Mm.840	NM_080595	ENSMUSG00000034164	Emid1	AW122071|CO-5|Emu1	EMI domain containing 1	protein-coding	0.015000	0.621891	
mm_45101.1	chr5	44741125	44741325	-	1	NA	NA	NA	58521	NM_001347349	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0.010000	0.378109	
mm_72567.1	chr8	84127032	84127232	+	1	NA	NA	NA	1143	NM_001013384	244550	Mm.334654	NM_001013384	ENSMUSG00000012889	Podnl1	5832418A03Rik|Gm506	podocan-like 1	protein-coding	0.005000	0.507463	
mm_66631.1	chr7	45510307	45510507	-	1	NA	NA	NA	1	NM_008749	18220	Mm.258923	NM_008749	ENSMUSG00000030824	Nucb1	B230337F23Rik|C77483|Calnuc|MTEST82|Nucb	nucleobindin 1	protein-coding	0.065000	0.592040	54(GGCCTTAAAAAA,-,0.00),56(CCTTAAAAAACG,+,0.00)
mm_120415.1	chr14	65358411	65358611	+	1	NA	NA	NA	-165	NM_199029	380912	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.175000	0.791045	
mm_147137.1	chr18	36321432	36321632	-	1	NA	NA	NA	21431	NM_001267796	109169	Mm.426423	NM_001267796	ENSMUSG00000110185	Igip	6330403M23Rik	IgA inducing protein	protein-coding	0.010000	0.482587	
mm_117552.1	chr13	84064697	84064897	-	1	NA	NA	NA	-23	NR_131220	553095	Mm.39702	NR_131220	ENSMUSG00000098087	Gm17750	-	predicted gene, 17750	ncRNA	0.015000	0.373134	-38(AGCTTTTAATGG,-,0.00),-36(CTTTTAATGGAA,+,0.00)
mm_100539.1	chr11	120672873	120673073	+	1	NA	NA	NA	0	NM_026877	68938	Mm.294020	NM_026877	ENSMUSG00000025142	Aspscr1	1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG	alveolar soft part sarcoma chromosome region, candidate 1 (human)	protein-coding	0.110000	0.681592	
mm_233.1	chr1	19104035	19104235	+	1	NA	NA	NA	1113	NM_153154	226896	Mm.244858	NM_153154	ENSMUSG00000042596	Tfap2d	Tcfap2d	transcription factor AP-2, delta	protein-coding	0.045000	0.587065	-34(ACCTATATAGGG,-,0.00)
mm_71647.1	chr8	58913600	58913800	+	1	NA	NA	NA	1945	NM_173411	234290	Mm.39244	NM_173411	ENSMUSG00000049946	BC030500	-	cDNA sequence BC030500	protein-coding	0.005000	0.442786	
mm_134589.1	chr16	20426219	20426419	-	1	NA	NA	NA	75	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.085000	0.601990	-14(CGCTATAAAGGC,-,0.00)
mm_24128.1	chr3	88207018	88207218	+	1	NA	NA	NA	-8053	NR_037276	100526540		NR_037276	ENSMUSG00000092988	Mir3093	mir-3093|mmu-mir-3093	microRNA 3093	ncRNA	0.020000	0.537313	
mm_56647.1	chr6	113377466	113377666	-	1	NA	NA	NA	-46	NM_133932	101206	Mm.266811	NM_133932	ENSMUSG00000048930	Tada3	1110004B19Rik|ADA3|AI987856|Tada3l	transcriptional adaptor 3	protein-coding	0.065000	0.711443	
mm_161225.1	chr13	73943963	73944163	+	1	NA	NA	NA	6252	NM_001308041	105246	Mm.278509	NM_001024508	ENSMUSG00000057649	Brd9	AL022779	bromodomain containing 9	protein-coding	0.010000	0.482587	49(GCTTTTAGATAG,+,0.00)
mm_165789.1	chr3	132592205	132592405	+	1	NA	NA	NA	-37886	NM_001270430	433653		NM_001270430	ENSMUSG00000091721	Gimd1	EG433653|Gm5549	GIMAP family P-loop NTPase domain containing 1	protein-coding	0.000000	0.452736	
mm_101663.1	chr11	36678437	36678637	-	1	NA	NA	NA	265704	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.010000	0.343284	-83(CCTTTTAAACTT,+,0.00)
mm_38911.1	chr4	149995708	149995908	-	1	NA	NA	NA	7428	NM_001291004	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.020000	0.562189	
mm_36774.1	chr4	102572117	102572317	-	1	NA	NA	NA	2157	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.020000	0.487562	
mm_171890.1	chr5	37338487	37338687	+	1	NA	NA	NA	109	NM_145920	68525	Mm.25506	NM_145920	ENSMUSG00000050248	Evc2	1110017L09Rik|Lbn|limbin	Ellis van Creveld syndrome 2	protein-coding	0.075000	0.721393	
mm_170098.1	chr17	39843056	39843256	+	1	NA	NA	NA	159	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.100000	0.671642	
mm_138647.1	chr17	35866766	35866966	+	1	NA	NA	NA	251	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.050000	0.597015	
mm_70443.1	chr8	11727954	11728154	+	1	NA	NA	NA	-51	NM_001113517	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.175000	0.786070	
mm_168467.1	chr1	148378580	148378780	+	1	NA	NA	NA	1543759	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.045000	0.492537	
mm_78594.1	chr9	37401872	37402072	+	1	NA	NA	NA	75	NM_001309390	74144	Mm.485070	NM_028783	ENSMUSG00000032125	Robo4	1200012D01Rik|AI593217	roundabout guidance receptor 4	protein-coding	0.015000	0.547264	
mm_103699.1	chr11	79516324	79516524	-	1	NA	NA	NA	7338	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.005000	0.432836	
mm_166112.1	chr4	149365686	149365886	-	1	NA	NA	NA	31147	NR_131918	74310	Mm.440455	NR_131918	ENSMUSG00000085286	Ube4bos3	1700121F15Rik	ubiquitination factor E4B, opposite strand 3	ncRNA	0.030000	0.616915	
mm_57648.1	chr6	128438466	128438666	-	1	NA	NA	NA	65	NM_010219	14228	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	59kDa|AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	0.170000	0.751244	
mm_51158.1	chr6	70722745	70722945	+	1	NA	NA	NA	69330	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.472637	
mm_62558.1	chr7	103812426	103812626	+	1	NA	NA	NA	1397	NM_016956	15130	Mm.288567	NM_016956		Hbb-b2	AI036344|Hbb2|Hbbt2|beta2	hemoglobin, beta adult minor chain	protein-coding	0.000000	0.353234	
mm_93576.1	chr10	116729078	116729278	-	1	NA	NA	NA	-1	NR_045345	72286	Mm.396207	NR_045345	ENSMUSG00000100198	1700030O20Rik	-	RIKEN cDNA 1700030O20 gene	ncRNA	0.035000	0.631841	
mm_170654.1	chr2	104590217	104590417	-	1	NA	NA	NA	-167	NM_177253	228410	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	0.090000	0.621891	
mm_29082.1	chr3	104220252	104220452	-	1	NA	NA	NA	54	NM_133853	99470	Mm.264849	NM_133853	ENSMUSG00000052539	Magi3	4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634	membrane associated guanylate kinase, WW and PDZ domain containing 3	protein-coding	0.140000	0.751244	
mm_12976.1	chr2	90775780	90775980	+	1	NA	NA	NA	-6864	NM_178755	271813	Mm.61146	NM_178755	ENSMUSG00000040812	Agbl2	4930524K04|A430081C19Rik|CCP2	ATP/GTP binding protein-like 2	protein-coding	0.005000	0.398010	
mm_25010.1	chr3	97901125	97901325	+	1	NA	NA	NA	-2	NM_011342	20333	Mm.2551	NM_011342	ENSMUSG00000027879	Sec22b	4930564D15Rik|AA517334|AI480645|C81333|ERS-24|Sec22l1	SEC22 homolog B, vesicle trafficking protein	protein-coding	0.075000	0.606965	
mm_105031.1	chr11	100494095	100494295	-	1	NA	NA	NA	-15715	NR_130343	102465671		NR_130343	ENSMUSG00000104854	Mir7116	mmu-mir-7116	microRNA 7116	ncRNA	0.035000	0.517413	
mm_65829.1	chr7	29179255	29179455	-	1	NA	NA	NA	1318	NM_026545	57296	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	0.020000	0.432836	
mm_96684.1	chr11	69580287	69580487	+	1	NA	NA	NA	28	NM_001127233	22059	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.025000	0.562189	
mm_5672.1	chr1	42713652	42713852	-	1	NA	NA	NA	-298	NR_110495	66620	Mm.383631	NR_110495	ENSMUSG00000097063	Pantr2	2610207O16Rik|Pou3f3os2|linc-Brn1b	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 2	ncRNA	0.080000	0.626866	
mm_93443.1	chr10	109903738	109903938	-	1	NA	NA	NA	96381	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.035000	0.552239	
mm_92387.1	chr10	76595954	76596154	-	1	NA	NA	NA	20406	NM_080845	14317	Mm.36278	NM_080845	ENSMUSG00000001155	Ftcd	-	formiminotransferase cyclodeaminase	protein-coding	0.010000	0.527363	
mm_77095.1	chr8	110844928	110845128	-	1	NA	NA	NA	-1572	NM_001310607	102339	Mm.272930	NM_133973	ENSMUSG00000031753	Cog4	AW554810|D8Ertd515e	component of oligomeric golgi complex 4	protein-coding	0.005000	0.407960	
mm_51798.1	chr6	88575889	88576089	+	1	NA	NA	NA	51459	NM_001278671	74589	Mm.196226	NM_029013	ENSMUSG00000033182	Kbtbd12	4833415F11Rik|4933428M03Rik|Klhdc6	kelch repeat and BTB (POZ) domain containing 12	protein-coding	0.000000	0.442786	
mm_62440.1	chr7	101378022	101378222	+	1	NA	NA	NA	0	NM_001040112	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.030000	0.572139	
mm_167438.1	chr8	120041351	120041551	+	1	NA	NA	NA	49013	NM_001310635	78892	Mm.264680	NM_030209	ENSMUSG00000031825	Crispld2	1810049K24Rik|Lcrisp2|Lgl1|coffeecrisp	cysteine-rich secretory protein LCCL domain containing 2	protein-coding	0.010000	0.492537	
mm_69513.1	chr7	134520016	134520216	-	1	NA	NA	NA	-143288	NM_001081331	71007	Mm.334285	NM_001081331	ENSMUSG00000030994	D7Ertd443e	4933400E14Rik|FATS|Gm497	DNA segment, Chr 7, ERATO Doi 443, expressed	protein-coding	0.010000	0.497512	
mm_107858.1	chr12	69680772	69680972	+	1	NA	NA	NA	980	NM_001135559	20663	Mm.3770	NM_001135559	ENSMUSG00000034801	Sos2	SOS-2|mSOS-2	son of sevenless homolog 2 (Drosophila)	protein-coding	0.035000	0.507463	-33(GTCCCTTAAAAG,-,0.00),-32(TCCCTTAAAAGT,-,0.00),-31(CCCTTAAAAGTG,+,0.00)
mm_31676.1	chr4	62281523	62281723	+	1	NA	NA	NA	-4806	NM_025286	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.010000	0.532338	
mm_131085.1	chr16	4835314	4835514	+	1	NA	NA	NA	-2	NM_030192	78809	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	0.005000	0.557214	
mm_93167.1	chr10	93297736	93297936	-	1	NA	NA	NA	13323	NM_001322268	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.015000	0.402985	
mm_93678.1	chr10	117746287	117746487	-	1	NA	NA	NA	-29	NM_029875	215436	Mm.256753	NM_029875	ENSMUSG00000060181	Slc35e3	9330166G04Rik|AI481200	solute carrier family 35, member E3	protein-coding	0.175000	0.786070	
mm_86314.1	chr9	122865821	122866021	-	1	NA	NA	NA	85	NM_173364	235682	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	0.100000	0.686567	
mm_159334.1	chr3	40902396	40902596	-	1	NA	NA	NA	47	NR_045380	73297	Mm.422673	NM_028494	ENSMUSG00000074619	1700034I23Rik	-	FUN14 domain containing 2 pseudogene	pseudo	0.060000	0.577114	
mm_81083.1	chr9	106247845	106248045	+	1	NA	NA	NA	9	NM_020559	11655	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	0.115000	0.686567	
mm_55738.1	chr6	77476627	77476827	-	1	NA	NA	NA	-94252	NR_045141	70753	Mm.490700	NR_045141	ENSMUSG00000108077	6330415B21Rik	-	RIKEN cDNA 6330415B21 gene	ncRNA	0.000000	0.353234	
mm_152686.1	chr19	16386016	16386216	-	1	NA	NA	NA	-49551	NM_008137	14675	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.015000	0.358209	
mm_93513.1	chr10	115250412	115250612	-	1	NA	NA	NA	981	NM_025706	66687	Mm.22252	NM_025706	ENSMUSG00000020130	Tbc1d15	4432405K22Rik|AU022358|AU023730|AW557774|Ly6dl|Rab7-GAP	TBC1 domain family, member 15	protein-coding	0.055000	0.457711	
mm_28896.1	chr3	97931633	97931833	-	1	NA	NA	NA	1560	NM_001033779	433632	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.005000	0.472637	
mm_45342.1	chr5	65764317	65764517	-	1	NA	NA	NA	896	NM_001024917	333789	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.155000	0.825871	
mm_53152.1	chr6	125265472	125265672	+	1	NA	NA	NA	47	NR_015527	73870	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.020000	0.522388	
mm_168209.1	chr10	75034149	75034349	+	1	NA	NA	NA	-1663	NM_027730	71236	Mm.414817	NM_027730	ENSMUSG00000009070	Rsph14	4933431K05Rik|Rtdr1	radial spoke head homolog 14 (Chlamydomonas)	protein-coding	0.040000	0.537313	
mm_167815.1	chr9	124273408	124273608	+	1	NA	NA	NA	39186	NM_001243118	630836	Mm.458553	NM_001243117	ENSMUSG00000074829	2010315B03Rik	BC029716	RIKEN cDNA 2010315B03 gene	protein-coding	0.000000	0.407960	
mm_99693.1	chr11	106085265	106085465	+	1	NA	NA	NA	463	NM_011947	26406	Mm.27041	NM_011947	ENSMUSG00000020700	Map3k3	AW548911|MAPKKK3|Mekk3|mKIAA4031	mitogen-activated protein kinase kinase kinase 3	protein-coding	0.030000	0.582090	
mm_155180.1	chrX	53724740	53724940	+	1	NA	NA	NA	9	NM_029142	75013	Mm.336332	NM_029142	ENSMUSG00000055555	4930502E18Rik	Ct55	RIKEN cDNA 4930502E18 gene	protein-coding	0.025000	0.557214	
mm_97938.1	chr11	83655982	83656182	+	1	NA	NA	NA	-6502	NM_013652	20303	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.010000	0.338308	
mm_147647.1	chr18	60499325	60499525	-	1	NA	NA	NA	2558	NM_134133	106878	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.000000	0.507463	
mm_41063.1	chr5	86903766	86903966	+	1	NA	NA	NA	3071	NM_153598	100727	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding	0.000000	0.422886	
mm_83057.1	chr9	37545114	37545314	-	1	NA	NA	NA	5959	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.050000	0.611940	
mm_130841.1	chr15	101869706	101869906	-	1	NA	NA	NA	-188	NM_001003667	406220	Mm.292992	NM_001003667	ENSMUSG00000067594	Krt77	4732484G22Rik|K1emb|Krt239|mK1b	keratin 77	protein-coding	0.010000	0.472637	70(GTATATATAGGG,+,0.00)
mm_130265.1	chr15	96655433	96655633	-	1	NA	NA	NA	-12620	NM_001166458	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.020000	0.442786	
mm_92264.1	chr10	71143442	71143642	-	1	NA	NA	NA	16148	NM_031397	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	BicC family RNA binding protein 1	protein-coding	0.000000	0.432836	
mm_160111.1	chr7	25489415	25489615	-	1	NA	NA	NA	-11890	NM_001039187	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.010000	0.402985	
mm_172598.1	chr8	15519711	15519911	+	1	NA	NA	NA	462158	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.050000	0.497512	
mm_155696.1	chrX	94367056	94367256	+	1	NA	NA	NA	2	NM_001199338	68316	Mm.379156	NM_026673	ENSMUSG00000079508	Apoo	0610008C08Rik|1110019O03Rik	apolipoprotein O	protein-coding	0.050000	0.621891	-64(TTTTTTATAGTG,+,0.00)
mm_15424.1	chr2	156889430	156889630	+	1	NA	NA	NA	-2452	NM_029983	77799	Mm.29264	NM_029983	ENSMUSG00000027636	Sla2	A930009E21Rik|AI430952|SLAP-2|SLAP2	Src-like-adaptor 2	protein-coding	0.040000	0.557214	
mm_65071.1	chr7	19004150	19004350	-	1	NA	NA	NA	185	NM_178757	272359	Mm.274237	NM_178757	ENSMUSG00000044030	Irf2bp1	6330414O09Rik|C530033F24	interferon regulatory factor 2 binding protein 1	protein-coding	0.115000	0.711443	
mm_165052.1	chr19	41031114	41031314	-	1	NA	NA	NA	1939	NM_009345	21673	Mm.25620	NM_009345	ENSMUSG00000025014	Dntt	Tdt	deoxynucleotidyltransferase, terminal	protein-coding	0.035000	0.572139	
mm_32021.1	chr4	95054579	95054779	+	1	NA	NA	NA	-2457	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.005000	0.417910	
mm_30889.1	chr4	32252440	32252640	+	1	NA	NA	NA	-164895	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.025000	0.577114	
mm_45173.1	chr5	51526212	51526412	-	1	NA	NA	NA	27609	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.005000	0.353234	
mm_61068.1	chr7	51510884	51511084	+	1	NA	NA	NA	-45	NR_073508	233246	Mm.254431	NM_177694	ENSMUSG00000055489	Ano5	9330162L24|Gdd1|Tmem16e	anoctamin 5	protein-coding	0.055000	0.616915	
mm_76183.1	chr8	82402333	82402533	-	1	NA	NA	NA	153	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.030000	0.587065	
mm_129636.1	chr15	80239796	80239996	-	1	NA	NA	NA	5816	NM_178719	239555	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.000000	0.507463	
mm_424.1	chr1	34446936	34447136	+	1	NA	NA	NA	7207	NM_178601	27993	Mm.289667	NM_178601	ENSMUSG00000026127	Imp4	AA409888|AV031295|D1Wsu40e	IMP4, U3 small nucleolar ribonucleoprotein	protein-coding	0.005000	0.368159	
mm_34814.1	chr4	154937059	154937259	+	1	NA	NA	NA	-9082	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.010000	0.487562	32(GCATTTAGACTC,+,0.00)
mm_117184.1	chr13	63533495	63533695	-	1	NA	NA	NA	32140	NM_008957	19206	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes	patched 1	protein-coding	0.030000	0.552239	
mm_98058.1	chr11	85830855	85831055	+	1	NA	NA	NA	1433	NR_077059	69909	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.025000	0.502488	
mm_139948.1	chr17	71204537	71204737	+	1	NA	NA	NA	-17	NM_001164885	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.010000	0.432836	-7(TTTTTTAAAGAC,+,0.00)
mm_82459.1	chr9	15627816	15628016	-	1	NA	NA	NA	17	NM_181816	234964	Mm.32237	NM_181816	ENSMUSG00000039977	Ccdc67	4933401K09Rik|Deup1	coiled-coil domain containing 67	protein-coding	0.075000	0.701493	
mm_163307.1	chr12	4459506	4459706	+	1	NA	NA	NA	17576	NM_010881	17977	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0.040000	0.487562	
mm_171506.1	chr4	146270300	146270500	+	1	NA	NA	NA	15	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.025000	0.502488	
mm_159826.1	chr5	124124602	124124802	-	1	NA	NA	NA	8594	NM_144509	65105	Mm.29430	NM_144509	ENSMUSG00000029404	Arl6ip4	AA408210|AA408365|Aip-4|Srp25	ADP-ribosylation factor-like 6 interacting protein 4	protein-coding	0.020000	0.592040	
mm_143290.1	chr17	65884650	65884850	-	1	NA	NA	NA	173	NM_001198949	19765	Mm.17009	NM_009067	ENSMUSG00000024096	Ralbp1	RLIP76|Rip1	ralA binding protein 1	protein-coding	0.130000	0.731343	
mm_165663.1	chr3	88281941	88282141	+	1	NA	NA	NA	14797	NM_029801	76927	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	0.025000	0.402985	-34(CTGTATTAAAAG,-,0.00)
mm_10361.1	chr2	11705265	11705465	+	1	NA	NA	NA	72	NM_001271497	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.040000	0.572139	
mm_73494.1	chr8	107096827	107097027	+	1	NA	NA	NA	-382	NR_104410	21750	Mm.6402	NM_009353	ENSMUSG00000031921	Terf2	TRF2	telomeric repeat binding factor 2	protein-coding	0.015000	0.402985	
mm_125863.1	chr15	75268291	75268491	+	1	NA	NA	NA	-30	NM_008530	17071	Mm.377095	NM_008530	ENSMUSG00000022583	Ly6f	-	lymphocyte antigen 6 complex, locus F	protein-coding	0.000000	0.472637	
mm_164822.1	chr18	35572286	35572486	+	1	NA	NA	NA	10228	NM_010771	17184	Mm.215034	NM_010771	ENSMUSG00000037236	Matr3	1110061A14Rik|2810017I02Rik|AI841759|AW555618|D030046F20Rik|mKIAA0723	matrin 3	protein-coding	0.010000	0.462687	67(CAGCTTAAAAGG,-,0.00),69(GCTTAAAAGGAG,+,0.00)
mm_14038.1	chr2	122161451	122161651	+	1	NA	NA	NA	851	NM_080510	70928	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	0.030000	0.417910	
mm_101313.1	chr11	22799937	22800137	-	1	NA	NA	NA	59698	NM_016888	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.025000	0.577114	
mm_40686.1	chr5	65763430	65763630	+	1	NA	NA	NA	9	NM_001024917	333789	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.110000	0.726368	
mm_108456.1	chr12	82706960	82707160	+	1	NA	NA	NA	89561	NM_001282061	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0.005000	0.378109	
mm_159671.1	chr4	154855987	154856187	+	1	NA	NA	NA	-113	NM_172878	242800	Mm.72944	NM_172878	ENSMUSG00000046637	Ttc34	4932418L02|B230396O12Rik	tetratricopeptide repeat domain 34	protein-coding	0.185000	0.791045	
mm_107427.1	chr12	35579208	35579408	+	1	NA	NA	NA	-44319	NM_001314027	11622	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0.005000	0.353234	
mm_50336.1	chr6	48504268	48504468	+	1	NA	NA	NA	29	NR_027808	58894	Mm.31983	NR_015597	ENSMUSG00000107476	Zfp862-ps	4732460K03Rik|AI448302|Zfp862|mKIAA0543	zinc finger protein 862, pseudogene	pseudo	0.065000	0.587065	
mm_172781.1	chr8	98224720	98224920	-	1	NA	NA	NA	-787067	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	OTTMUSG00000025218	predicted gene 15679	ncRNA	0.060000	0.487562	
mm_151278.1	chr19	55253610	55253810	+	1	NA	NA	NA	341	NM_027976	433256	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.040000	0.537313	
mm_25447.1	chr3	108284023	108284223	+	1	NA	NA	NA	59	NM_019972	20661	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0.125000	0.761194	
mm_52438.1	chr6	113616120	113616320	+	1	NA	NA	NA	-7801	NM_009507	22346	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh	von Hippel-Lindau tumor suppressor	protein-coding	0.010000	0.532338	
mm_86405.1	chr9	123986587	123986787	-	1	NA	NA	NA	-8279	NM_007718	12770	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0.015000	0.457711	
mm_47079.1	chr5	117004608	117004808	-	1	NA	NA	NA	111285	NM_001122666	71954	Mm.34456	NM_178622	ENSMUSG00000066900	Suds3	2400003N08Rik|2410008L21Rik|AU067672|mSds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	protein-coding	0.010000	0.517413	
mm_28626.1	chr3	95133862	95134062	-	1	NA	NA	NA	50	NM_027013	69269	Mm.182944	NM_027013	ENSMUSG00000092607	Scnm1	3110001I17Rik|Scnm1-ps	sodium channel modifier 1	protein-coding	0.080000	0.522388	69(GTCTTTTAAGAG,-,0.00),71(CTTTTAAGAGGG,+,0.00)
mm_116456.1	chr13	43292410	43292610	-	1	NA	NA	NA	11662	NM_001033399	328232	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	0.000000	0.407960	
mm_21048.1	chr2	152580208	152580408	-	1	NA	NA	NA	4	NM_145157	246700	Mm.82820	NM_145157	ENSMUSG00000050645	Defb19	BD-19|Defb24|Tdl|mBD-19	defensin beta 19	protein-coding	0.010000	0.582090	
mm_148145.1	chr18	77064954	77065154	-	1	NA	NA	NA	-154	NM_008602	17344	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0.130000	0.726368	
mm_69216.1	chr7	127512753	127512953	-	1	NA	NA	NA	16	NR_024331	629159	Mm.256720	NR_024331	ENSMUSG00000101225	1700008J07Rik	AW048743	RIKEN cDNA 1700008J07 gene	ncRNA	0.125000	0.726368	
mm_156570.1	chrX	151910067	151910267	+	1	NA	NA	NA	-2179	NR_029732	387253		NR_029732	ENSMUSG00000065602	Mirlet7f-2	Mirlet7f2|Mirnlet7f2|let-7f-2	microRNA let7f-2	ncRNA	0.005000	0.417910	
mm_37583.1	chr4	126325613	126325813	-	1	NA	NA	NA	-514	NM_011902	24084	Mm.23895	NM_011902	ENSMUSG00000028845	Tekt2	AU014974|tektin-t	tektin 2	protein-coding	0.070000	0.661692	
mm_100821.1	chr11	5261437	5261637	-	1	NA	NA	NA	73	NM_032396	84035	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	0.160000	0.835821	
mm_75142.1	chr8	35430655	35430855	-	1	NA	NA	NA	55014	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.035000	0.587065	
mm_116692.1	chr13	49320109	49320309	-	1	NA	NA	NA	-11001	NM_015759	30938	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.025000	0.656716	
mm_75677.1	chr8	67974444	67974644	-	1	NA	NA	NA	30	NM_177698	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.020000	0.492537	
mm_61036.1	chr7	49609622	49609822	+	1	NA	NA	NA	27113	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.035000	0.368159	
mm_149045.1	chr19	8822763	8822963	+	1	NA	NA	NA	3462	NM_001081196	68693	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0.030000	0.492537	-100(CAGTATAAAAAC,-,0.00)
mm_27608.1	chr3	59195003	59195203	-	1	NA	NA	NA	1	NM_001302203	84111	Mm.60267	NM_032399	ENSMUSG00000051431	Gpr87	-	G protein-coupled receptor 87	protein-coding	0.025000	0.517413	
mm_87743.1	chr10	60266827	60267027	+	1	NA	NA	NA	-10701	NM_001146123	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.015000	0.517413	
mm_100536.1	chr11	120632598	120632798	+	1	NA	NA	NA	849	NM_010756	17134	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.070000	0.656716	
mm_167830.1	chr9	124423964	124424164	-	1	NA	NA	NA	277	NR_015516	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.145000	0.726368	
mm_65549.1	chr7	27131174	27131374	-	1	NA	NA	NA	11319	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.070000	0.587065	
mm_157774.1	chrX	73780016	73780216	-	1	NA	NA	NA	5711	NM_019684	56504	Mm.111904	NM_019684	ENSMUSG00000002007	Srpk3	Mssk1|Stk23	serine/arginine-rich protein specific kinase 3	protein-coding	0.010000	0.512438	
mm_135173.1	chr16	35938797	35938997	-	1	NA	NA	NA	130	NM_001013371	209200	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0.080000	0.631841	-63(GGGTCTTTAGGG,-,0.00)
mm_5344.1	chr1	24613018	24613218	-	1	NA	NA	NA	-25681	NM_007733	12823	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.010000	0.328358	
mm_145806.1	chr18	65385934	65386134	+	1	NA	NA	NA	7854	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.000000	0.412935	
mm_54944.1	chr6	48572672	48572872	-	1	NA	NA	NA	30	NM_001347168	71660	Mm.28231	NM_027852	ENSMUSG00000009281	Rarres2	0610007L05Rik|AI303516	retinoic acid receptor responder (tazarotene induced) 2	protein-coding	0.010000	0.562189	
mm_84252.1	chr9	62476504	62476704	-	1	NA	NA	NA	60440	NM_175484	235431	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.000000	0.363184	
mm_98107.1	chr11	86872780	86872980	+	1	NA	NA	NA	-65220	NM_026191	67487	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.015000	0.512438	
mm_41612.1	chr5	96793319	96793519	+	1	NA	NA	NA	34	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.050000	0.651741	
mm_158012.1	chrX	95658285	95658485	-	1	NA	NA	NA	124	NM_001289696	245522	Mm.336158	NM_001003916	ENSMUSG00000035062	Zc4h2	Gm372|mKIAA1166	zinc finger, C4H2 domain containing	protein-coding	0.010000	0.477612	
mm_147350.1	chr18	43328565	43328765	-	1	NA	NA	NA	44607	NM_001136086	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.005000	0.412935	
mm_44743.1	chr5	31193020	31193220	-	1	NA	NA	NA	19	NM_001127355	13667	Mm.29394	NM_010122	ENSMUSG00000029145	Eif2b4	Eif2b	eukaryotic translation initiation factor 2B, subunit 4 delta	protein-coding	0.075000	0.656716	
mm_170975.1	chr2	67707709	67707909	-	1	NA	NA	NA	32352	NR_106083	102465706		NR_106083	ENSMUSG00000098299	Mir7224	Gm27971|mmu-mir-7224	microRNA 7224	ncRNA	0.035000	0.452736	
mm_32850.1	chr4	117977501	117977701	+	1	NA	NA	NA	-47838	NM_001284192	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.020000	0.522388	-32(CTATTTATAGCC,+,0.00)
mm_147074.1	chr18	35498723	35498923	-	1	NA	NA	NA	102	NM_030749	81500	Mm.291482	NM_030749	ENSMUSG00000024357	Sil1	1810057E01Rik|AI042831|wz	endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)	protein-coding	0.110000	0.716418	
mm_151793.1	chr19	5402411	5402611	-	1	NA	NA	NA	-4304	NR_015545	74931	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	0.025000	0.532338	
mm_170281.1	chr18	27599165	27599365	+	1	NA	NA	NA	-960899	NR_045398	320624	Mm.50107	NR_045398		4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.035000	0.547264	
mm_114902.1	chr13	94731810	94732010	+	1	NA	NA	NA	-57033	NM_009321	21371	Mm.379025	NM_009321	ENSMUSG00000042043	Tbca	Tbca13	tubulin cofactor A	protein-coding	0.005000	0.353234	73(TTTTTTAAAGAG,+,0.00)
mm_32912.1	chr4	119133102	119133302	+	1	NA	NA	NA	24457	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.035000	0.606965	
mm_136686.1	chr17	6816496	6816696	+	1	NA	NA	NA	-33816	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.015000	0.532338	
mm_58605.1	chr7	5051518	5051718	+	1	NA	NA	NA	86	NM_026900	68992	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	0.150000	0.766169	
mm_143602.1	chr17	76886771	76886971	-	1	NA	NA	NA	1025848	NR_033456	100043885	Mm.127562	NR_033456		Gm4710	-	predicted gene 4710	ncRNA	0.005000	0.477612	
mm_108574.1	chr12	84996264	84996464	+	1	NA	NA	NA	43	NM_178363	56531	Mm.153183	NM_178363	ENSMUSG00000021244	Ylpm1	A930013E17Rik|ZAP|Zap3	YLP motif containing 1	protein-coding	0.165000	0.716418	
mm_61385.1	chr7	72672685	72672885	+	1	NA	NA	NA	-366190	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.050000	0.512438	
mm_26079.1	chr3	136670494	136670694	+	1	NA	NA	NA	528	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.115000	0.666667	
mm_68078.1	chr7	101869254	101869454	-	1	NA	NA	NA	1434	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.025000	0.522388	
mm_25954.1	chr3	132085353	132085553	+	1	NA	NA	NA	161	NM_020265	56811	Mm.103593	NM_020265	ENSMUSG00000028031	Dkk2	-	dickkopf WNT signaling pathway inhibitor 2	protein-coding	0.035000	0.592040	
mm_102132.1	chr11	53430402	53430602	-	1	NA	NA	NA	329	NM_025352	22272	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	0.115000	0.646766	
mm_92967.1	chr10	86102064	86102264	-	1	NA	NA	NA	6310	NR_038024	78170	Mm.444790	NR_038024		4930486F22Rik	-	RIKEN cDNA 4930486F22 gene	ncRNA	0.015000	0.482587	
mm_65055.1	chr7	18735039	18735239	-	1	NA	NA	NA	17049	NM_001004152	243862	Mm.389833	NM_001004152	ENSMUSG00000044903	Psg22	AA408604|cea9	pregnancy-specific glycoprotein 22	protein-coding	0.015000	0.452736	
mm_132879.1	chr16	48786564	48786764	+	1	NA	NA	NA	-14708	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.005000	0.388060	
mm_989.1	chr1	58586508	58586708	+	1	NA	NA	NA	211	NM_025597	66495	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH dehydrogenase (ubiquinone) 1 beta subcomplex 3	protein-coding	0.055000	0.507463	
mm_140958.1	chr17	24632520	24632720	-	1	NA	NA	NA	7	NM_011647	22084	Mm.30435	NM_011647	ENSMUSG00000002496	Tsc2	Nafld|Tcs2	tuberous sclerosis 2	protein-coding	0.105000	0.671642	
mm_3456.1	chr1	150103782	150103982	+	1	NA	NA	NA	3851	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.000000	0.417910	
mm_149296.1	chr19	10689168	10689368	+	1	NA	NA	NA	453	NM_181403	107305	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.045000	0.572139	
mm_54413.1	chr6	32588127	32588327	-	1	NA	NA	NA	-35	NM_175750	243743	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0.090000	0.736318	
mm_12709.1	chr2	76675236	76675436	+	1	NA	NA	NA	21	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.125000	0.726368	
mm_126173.1	chr15	78564838	78565038	+	1	NA	NA	NA	7845	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.025000	0.601990	
mm_111421.1	chr12	91589601	91589801	-	1	NA	NA	NA	-52	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.030000	0.417910	
mm_79080.1	chr9	46242316	46242516	+	1	NA	NA	NA	1572	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.025000	0.542289	
mm_67468.1	chr7	80417672	80417872	-	1	NA	NA	NA	-12336	NM_001081454	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.000000	0.507463	
mm_20828.1	chr2	146511904	146512104	-	1	NA	NA	NA	0	NM_001033348	241694	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	0.140000	0.771144	
mm_120083.1	chr14	57798068	57798268	+	1	NA	NA	NA	-21	NM_009119	20220	Mm.30173	NM_009119	ENSMUSG00000021963	Sap18	C530046K05Rik|D11Ertd539e|EMegR4|Sap18a|Sinbp1	Sin3-associated polypeptide 18	protein-coding	0.125000	0.651741	
mm_8652.1	chr1	156446494	156446694	-	1	NA	NA	NA	-25679	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.020000	0.467662	
mm_83520.1	chr9	46229899	46230099	-	1	NA	NA	NA	1369	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.040000	0.567164	
mm_17766.1	chr2	32788650	32788850	-	1	NA	NA	NA	-4345	NM_025619	227736	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	0.000000	0.517413	
mm_93644.1	chr10	117350785	117350985	-	1	NA	NA	NA	26088	NM_001013391	432508	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.000000	0.298507	
mm_24556.1	chr3	93443444	93443644	+	1	NA	NA	NA	1214	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.050000	0.507463	
mm_42190.1	chr5	112269402	112269602	+	1	NA	NA	NA	-7189	NM_001326590	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.055000	0.626866	65(GTTCTTATAGCC,+,0.00)
mm_70428.1	chr8	11519137	11519337	+	1	NA	NA	NA	21669	NM_026995	69225	Mm.64911	NM_026995	ENSMUSG00000031505	Naxd	0710008K08Rik|2810407E01Rik|Carkd	NAD(P)HX dehydratase	protein-coding	0.015000	0.582090	
mm_124416.1	chr14	118051898	118052098	-	1	NA	NA	NA	248	NM_010024	13190	Mm.19987	NM_010024	ENSMUSG00000022129	Dct	DT|TRP-2|TRP2|Tyrp-2|Tyrp2|slaty|slt	dopachrome tautomerase	protein-coding	0.020000	0.417910	
mm_126392.1	chr15	80192072	80192272	+	1	NA	NA	NA	18451	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.010000	0.502488	
mm_62031.1	chr7	91711575	91711775	+	1	NA	NA	NA	-350719	NM_001243046	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.025000	0.383085	
mm_71194.1	chr8	40877717	40877917	+	1	NA	NA	NA	15450	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.005000	0.432836	
mm_63076.1	chr7	122219535	122219735	+	1	NA	NA	NA	139	NM_027363	70261	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.045000	0.606965	
mm_39842.1	chr5	30889072	30889272	+	1	NA	NA	NA	-162	NM_001294262	231093	Mm.440364	NM_174849	ENSMUSG00000029165	Agbl5	9430057O19Rik|CCP5	ATP/GTP binding protein-like 5	protein-coding	0.100000	0.756219	
mm_66739.1	chr7	46672418	46672618	-	1	NA	NA	NA	19	NM_009414	21990	Mm.248684	NM_009414	ENSMUSG00000040046	Tph1	Tph	tryptophan hydroxylase 1	protein-coding	0.030000	0.497512	
mm_144394.1	chr18	20673610	20673810	+	1	NA	NA	NA	8460	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.025000	0.552239	
mm_26407.1	chr3	142606871	142607071	+	1	NA	NA	NA	12124	NM_010259	14468	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.000000	0.457711	
mm_147702.1	chr18	60809913	60810113	-	1	NA	NA	NA	-2063	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.020000	0.542289	
mm_158997.1	chr1	139781130	139781330	-	1	NA	NA	NA	9	NM_001029977	214403	Mm.337613	NM_001029977	ENSMUSG00000070594	Gm4788	Cfhrc|EG214403	predicted gene 4788	protein-coding	0.000000	0.407960	
mm_148603.1	chr19	5298266	5298466	+	1	NA	NA	NA	35	NM_001024717	545276	Mm.447174	NM_001024717	ENSMUSG00000047658	Gal3st3	-	galactose-3-O-sulfotransferase 3	protein-coding	0.070000	0.651741	
mm_152380.1	chr19	10240620	10240820	-	1	NA	NA	NA	28	NM_001033481	225908	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.160000	0.815920	
mm_50919.1	chr6	57605310	57605510	+	1	NA	NA	NA	24418	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.000000	0.363184	
mm_94789.1	chr11	22621234	22621434	+	1	NA	NA	NA	109051	NM_153596	103765	Mm.221274	NM_153596	ENSMUSG00000049904	Tmem17	AI503894|AW049890	transmembrane protein 17	protein-coding	0.005000	0.398010	
mm_55533.1	chr6	70726777	70726977	-	1	NA	NA	NA	65298	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.010000	0.497512	
mm_79324.1	chr9	53285952	53286152	+	1	NA	NA	NA	-15618	NM_176846	320051	Mm.277540	NM_176846	ENSMUSG00000034584	Exph5	AC079869.22gm5|B130009M24Rik|E030050P12|Kiaa0624|Slac2b|slac2-b	exophilin 5	protein-coding	0.015000	0.412935	
mm_172316.1	chr7	106215226	106215426	-	1	NA	NA	NA	11	NM_001243039	100042856	Mm.425473	NM_001243039	ENSMUSG00000078606	Gm4070	VLIG-1	predicted gene 4070	protein-coding	0.000000	0.522388	-28(CCTCATAGAGCC,+,0.00)
mm_32999.1	chr4	120517501	120517701	+	1	NA	NA	NA	-14630	NM_177570	194219	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	0.020000	0.487562	
mm_112218.1	chr12	113429021	113429221	-	1	NA	NA	NA	-60444	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.512438	
mm_121710.1	chr14	16172356	16172556	-	1	NA	NA	NA	-76858	NM_021504	59007	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	0.005000	0.487562	
mm_98098.1	chr11	86629544	86629744	+	1	NA	NA	NA	-26427	NR_106195	102465902		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	0.010000	0.373134	
mm_9037.1	chr1	167237427	167237627	-	1	NA	NA	NA	47600	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.020000	0.547264	
mm_71324.1	chr8	44938144	44938344	+	1	NA	NA	NA	-11964	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.145000	0.736318	
mm_66605.1	chr7	45460834	45461034	-	1	NA	NA	NA	-1048	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.035000	0.592040	
mm_71722.1	chr8	61967402	61967602	+	1	NA	NA	NA	39415	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.005000	0.527363	
mm_144941.1	chr18	37765883	37766083	+	1	NA	NA	NA	403	NM_033595	93724	Mm.247203	NM_033595	ENSMUSG00000102428	Pcdhga12	Pcdh13|pc2c	protocadherin gamma subfamily A, 12	protein-coding	0.035000	0.532338	
mm_136516.1	chr16	97452773	97452973	-	1	NA	NA	NA	10032	NM_010846	17857	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.010000	0.527363	
mm_124337.1	chr14	103844137	103844337	-	1	NA	NA	NA	239	NM_001136061	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.040000	0.597015	
mm_102444.1	chr11	59644394	59644594	-	1	NA	NA	NA	-18001	NM_201245	26936	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	0.000000	0.492537	-34(GCTTTAAGACCC,+,0.00)
mm_13405.1	chr2	103981466	103981666	+	1	NA	NA	NA	11279	NM_001142335	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.005000	0.412935	
mm_135708.1	chr16	55522207	55522407	-	1	NA	NA	NA	27576	NR_039578	100628589		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.000000	0.462687	-33(GGATTTATAAGA,-,0.00)
mm_138146.1	chr17	34204489	34204689	+	1	NA	NA	NA	110	NM_011530	21355	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.085000	0.621891	
mm_11593.1	chr2	33228750	33228950	+	1	NA	NA	NA	12889	NM_011923	26360	Mm.208919	NM_011923	ENSMUSG00000004105	Angptl2	AI593246|AW260363|Arp2	angiopoietin-like 2	protein-coding	0.025000	0.577114	
mm_67939.1	chr7	100121379	100121579	-	1	NA	NA	NA	21	NM_133692	67967	Mm.37562	NM_133692	ENSMUSG00000030726	Pold3	2410142G14Rik|C85233|P66|P68	polymerase (DNA-directed), delta 3, accessory subunit	protein-coding	0.110000	0.651741	
mm_72566.1	chr8	84127008	84127208	+	1	NA	NA	NA	1119	NM_001013384	244550	Mm.334654	NM_001013384	ENSMUSG00000012889	Podnl1	5832418A03Rik|Gm506	podocan-like 1	protein-coding	0.005000	0.517413	
mm_80199.1	chr9	72400329	72400529	+	1	NA	NA	NA	-38100	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.005000	0.368159	
mm_156832.1	chrX	164373216	164373416	+	1	NA	NA	NA	-206	NM_001308489	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.005000	0.437811	-63(AGCTTTTAAAAC,-,0.00),-62(GCTTTTAAAACT,+,0.00),-61(CTTTTAAAACTG,+,0.00)
mm_43856.1	chr5	143406966	143407166	+	1	NA	NA	NA	3246	NM_025841	66913	Mm.181880	NM_025841	ENSMUSG00000079111	Kdelr2	1110007A14Rik	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2	protein-coding	0.010000	0.388060	-46(TCTTTTAGGGTG,+,0.00)
mm_97497.1	chr11	78346596	78346796	+	1	NA	NA	NA	-14	NM_001313986	22248	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.010000	0.562189	
mm_130269.1	chr15	96698603	96698803	-	1	NA	NA	NA	995	NM_175121	67760	Mm.46754	NM_175121	ENSMUSG00000022462	Slc38a2	5033402L14Rik|AI316867|ATA2|SAT2|mKIAA1382	solute carrier family 38, member 2	protein-coding	0.065000	0.577114	
mm_125117.1	chr15	28576375	28576575	+	1	NA	NA	NA	372709	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.005000	0.213930	
mm_128644.1	chr15	59524484	59524684	-	1	NA	NA	NA	-124070	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.005000	0.407960	-36(AGCTTTATATGG,-,0.00),-34(CTTTATATGGCT,+,0.00)
mm_21850.1	chr2	165865859	165866059	-	1	NA	NA	NA	-7786	NM_001252585	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.010000	0.417910	
mm_124873.1	chr15	10215937	10216137	+	1	NA	NA	NA	-7869	NM_001253781	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.020000	0.467662	
mm_108742.1	chr12	88724885	88725085	+	1	NA	NA	NA	-69519	NM_001198587	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.030000	0.537313	
mm_44003.1	chr5	146948625	146948825	+	1	NA	NA	NA	68	NM_025652	66596	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0.145000	0.751244	
mm_132969.1	chr16	52031233	52031433	+	1	NA	NA	NA	-216	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.055000	0.592040	
mm_157419.1	chrX	38564058	38564258	-	1	NA	NA	NA	12038	NM_028288	72584	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	0.015000	0.502488	
mm_109067.1	chr12	104345221	104345421	+	1	NA	NA	NA	6835	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.010000	0.502488	68(CTCTTTATGGCC,+,0.00)
mm_143866.1	chr17	84186609	84186809	-	1	NA	NA	NA	1238	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.085000	0.661692	
mm_13003.1	chr2	90904640	90904840	+	1	NA	NA	NA	0	NM_001311116	67136	Mm.330394	NM_025991	ENSMUSG00000005505	Kbtbd4	2510026C23Rik	kelch repeat and BTB (POZ) domain containing 4	protein-coding	0.075000	0.616915	
mm_133048.1	chr16	57569759	57569959	+	1	NA	NA	NA	20617	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.010000	0.482587	54(GACTAGAAAAAG,-,0.00)
mm_21072.1	chr2	152830173	152830373	-	1	NA	NA	NA	444	NM_001289716	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.015000	0.477612	
mm_18261.1	chr2	52291064	52291264	-	1	NA	NA	NA	162	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.040000	0.482587	
mm_128469.1	chr15	50821719	50821919	-	1	NA	NA	NA	67230	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.005000	0.432836	
mm_123721.1	chr14	70153105	70153305	-	1	NA	NA	NA	586	NM_146055	219158	Mm.218284	NM_146055	ENSMUSG00000033712	Ccar2	2610301G19Rik|Dbc1|mKIAA1967	cell cycle activator and apoptosis regulator 2	protein-coding	0.055000	0.582090	
mm_108631.1	chr12	85686575	85686775	+	1	NA	NA	NA	-45	NM_016767	53314	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.030000	0.537313	
mm_39188.1	chr4	155869325	155869525	-	1	NA	NA	NA	15	NM_024472	79554	Mm.25556	NM_024472	ENSMUSG00000029073	Cptp	Gltpd1	ceramide-1-phosphate transfer protein	protein-coding	0.060000	0.616915	
mm_121403.1	chr14	119172959	119173159	+	1	NA	NA	NA	34794	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.005000	0.368159	
mm_151302.1	chr19	55741814	55742014	+	1	NA	NA	NA	104	NM_001142923	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.055000	0.497512	
mm_67681.1	chr7	89338556	89338756	-	1	NA	NA	NA	131	NM_028343	72759	Mm.208477	NM_028343	ENSMUSG00000039428	Tmem135	2810439K08Rik|AW319712|PMP52	transmembrane protein 135	protein-coding	0.120000	0.701493	
mm_105934.1	chr11	115133861	115134061	-	1	NA	NA	NA	31	NM_001347648	246746	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.030000	0.547264	-62(TGCTTTATATGC,-,0.00)
mm_47197.1	chr5	120777546	120777746	-	1	NA	NA	NA	13	NM_145226	246727	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	0.025000	0.572139	
mm_8281.1	chr1	140096407	140096607	-	1	NA	NA	NA	86904	NM_009888	12628	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0.005000	0.373134	
mm_9650.1	chr1	177462929	177463129	-	1	NA	NA	NA	17208	NM_013915	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.005000	0.512438	
mm_11718.1	chr2	36242688	36242888	+	1	NA	NA	NA	12362	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.050000	0.641791	
mm_74190.1	chr8	123653759	123653959	+	1	NA	NA	NA	-70	NM_133955	69581	Mm.168257	NM_133955	ENSMUSG00000039960	Rhou	2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K	ras homolog family member U	protein-coding	0.150000	0.751244	
mm_113796.1	chr13	46418191	46418391	+	1	NA	NA	NA	-9	NM_001081425	666794	Mm.38269	NM_001081425	ENSMUSG00000038132	Rbm24	6330546B05Rik|AI606861	RNA binding motif protein 24	protein-coding	0.085000	0.701493	
mm_17050.1	chr2	20968879	20969079	-	1	NA	NA	NA	105	NR_033225	433408	Mm.386941	NR_033225		Gm13375	OTTMUSG00000011664	predicted gene 13375	ncRNA	0.140000	0.766169	
mm_56643.1	chr6	113343832	113344032	-	1	NA	NA	NA	-10	NM_133926	52163	Mm.277373	NM_133926	ENSMUSG00000030272	Camk1	AI505105|CaMKIalpha|D6Ertd263e	calcium/calmodulin-dependent protein kinase I	protein-coding	0.090000	0.721393	
mm_29790.1	chr3	127553118	127553318	-	1	NA	NA	NA	131	NM_138593	28036	Mm.291032	NM_138593	ENSMUSG00000027968	Larp7	C330027G06Rik|D3Wsu161e	La ribonucleoprotein domain family, member 7	protein-coding	0.095000	0.606965	
mm_71069.1	chr8	34146264	34146464	+	1	NA	NA	NA	375	NM_026609	68192	Mm.34212	NM_026609	ENSMUSG00000031513	Leprotl1	1110067H13Rik|1520402O14Rik|AI854296	leptin receptor overlapping transcript-like 1	protein-coding	0.055000	0.522388	-6(CACCTTAAAAAC,-,0.00),-4(CCTTAAAAACAC,+,0.00)
mm_34307.1	chr4	141793733	141793933	+	1	NA	NA	NA	221	NM_001277932	12371	Mm.88829	NM_015733	ENSMUSG00000028914	Casp9	AI115399|APAF-3|AW493809|CASP-9|Caspase-9|ICE-LAP6|Mch6	caspase 9	protein-coding	0.130000	0.746269	
mm_110499.1	chr12	54203751	54203951	-	1	NA	NA	NA	23	NM_028133	112407	Mm.133037	NM_028133	ENSMUSG00000035105	Egln3	2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20	egl-9 family hypoxia-inducible factor 3	protein-coding	0.090000	0.701493	
mm_54198.1	chr6	24664784	24664984	-	1	NA	NA	NA	111	NM_001167745	73178	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0.130000	0.731343	
mm_61173.1	chr7	59314514	59314714	+	1	NA	NA	NA	9535	NR_015479	330544	Mm.9002	NR_015479	ENSMUSG00000100826	C230091D08Rik	-	RIKEN cDNA C230091D08 gene	ncRNA	0.000000	0.343284	
mm_14863.1	chr2	148798554	148798754	+	1	NA	NA	NA	-185	NM_009978	13012	Mm.20435	NM_009978	ENSMUSG00000027442	Cst8	Cres|Cst-rs1	cystatin 8 (cystatin-related epididymal spermatogenic)	protein-coding	0.000000	0.502488	-69(AAGCATAAAAGC,-,0.00)
mm_92024.1	chr10	62422338	62422538	-	1	NA	NA	NA	19	NM_145419	216019	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	0.060000	0.567164	
mm_22148.1	chr2	172395930	172396130	-	1	NA	NA	NA	2236	NM_001276423	320664	Mm.210195	NM_001033538	ENSMUSG00000074570	Cass4	F730031O20Rik	Cas scaffolding protein family member 4	protein-coding	0.015000	0.572139	
mm_165012.1	chr19	27322501	27322701	+	1	NA	NA	NA	-18	NM_183179	240595	Mm.269759	NM_183179	ENSMUSG00000047298	Kcnv2	KV11.1	potassium channel, subfamily V, member 2	protein-coding	0.005000	0.517413	
mm_169041.1	chr13	14399974	14400174	+	1	NA	NA	NA	123152	NM_001081348	94253	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.040000	0.487562	-76(GAGTATAAAAGA,-,0.00)
mm_70236.1	chr8	3353227	3353427	+	1	NA	NA	NA	-88	NM_001033378	319493	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0.030000	0.592040	
mm_112133.1	chr12	112959440	112959640	-	1	NA	NA	NA	-16942	NM_001145900	399566	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	0.005000	0.557214	
mm_157386.1	chrX	38224520	38224720	-	1	NA	NA	NA	14179	NR_037297	100526512		NR_037297	ENSMUSG00000092794	Mir3110	mmu-mir-3110	microRNA 3110	ncRNA	0.020000	0.537313	
mm_9685.1	chr1	178333847	178334047	-	1	NA	NA	NA	3837	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.015000	0.398010	
mm_157647.1	chrX	57304988	57305188	-	1	NA	NA	NA	33641	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	0.010000	0.547264	
mm_56480.1	chr6	99096084	99096284	-	1	NA	NA	NA	-67886	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.025000	0.472637	
mm_103039.1	chr11	69761818	69762018	-	1	NA	NA	NA	-74	NM_019871	56293	Mm.6211	NM_019871	ENSMUSG00000018776	Slc35g3	Amac1	solute carrier family 35, member G3	protein-coding	0.005000	0.512438	
mm_137288.1	chr17	24739945	24740145	+	1	NA	NA	NA	3452	NM_001346668	27361	Mm.28212	NM_013759	ENSMUSG00000075705	Msrb1	D17Wsu82e|SELX|SelR|Sepr|Sepx1	methionine sulfoxide reductase B1	protein-coding	0.015000	0.572139	
mm_81315.1	chr9	108436367	108436567	+	1	NA	NA	NA	-15	NM_001004192	434439	Mm.78372	NM_001004192	ENSMUSG00000050641	BC048562	-	cDNA sequence BC048562	protein-coding	0.005000	0.482587	
mm_165006.1	chr19	24200384	24200584	-	1	NA	NA	NA	24542	NM_011597	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.025000	0.522388	
mm_2548.1	chr1	107589919	107590119	+	1	NA	NA	NA	13	NM_001159748	20725	Mm.83909	NM_011459	ENSMUSG00000026315	Serpinb8	CAP-2|CAP2|NK10|Spi8|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 8	protein-coding	0.015000	0.557214	
mm_139144.1	chr17	47512804	47513004	+	1	NA	NA	NA	7853	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.457711	
mm_153905.1	chr19	47131893	47132093	-	1	NA	NA	NA	6301	NM_133746	72691	Mm.31663	NM_133746	ENSMUSG00000033033	Calhm2	2810048G17Rik|Fam26b	calcium homeostasis modulator 2	protein-coding	0.015000	0.517413	
mm_12684.1	chr2	75871861	75872061	+	1	NA	NA	NA	39784	NM_172666	228061	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.005000	0.348259	33(CCATATAAAAGA,-,0.00)
mm_31402.1	chr4	48047173	48047373	+	1	NA	NA	NA	1968	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.055000	0.577114	
mm_112518.1	chr13	9127875	9128075	+	1	NA	NA	NA	34094	NM_172585	217980	Mm.234944	NM_172585	ENSMUSG00000033499	Larp4b	A630096F19|AI256361|D13Wsu64e|Larp5	La ribonucleoprotein domain family, member 4B	protein-coding	0.015000	0.432836	
mm_99966.1	chr11	113684442	113684642	+	1	NA	NA	NA	130	NM_177777	276852	Mm.239566	NM_177777	ENSMUSG00000041623	D11Wsu47e	-	DNA segment, Chr 11, Wayne State University 47, expressed	protein-coding	0.100000	0.616915	
mm_24073.1	chr3	87919603	87919803	+	1	NA	NA	NA	159	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.055000	0.522388	
mm_72890.1	chr8	90492999	90493199	+	1	NA	NA	NA	-144847	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding	0.025000	0.542289	
mm_5741.1	chr1	45502467	45502667	-	1	NA	NA	NA	715	NM_007737	12832	Mm.10299	NM_007737	ENSMUSG00000026042	Col5a2	1110014L14Rik	collagen, type V, alpha 2	protein-coding	0.035000	0.467662	19(ACGTTTAAAAGA,-,0.00)
mm_135236.1	chr16	36990048	36990248	-	1	NA	NA	NA	-11012	NM_001037321	207215	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0.040000	0.527363	
mm_116291.1	chr13	35211948	35212148	-	1	NA	NA	NA	0	NR_126478	75543	Mm.489052	NR_126478		1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	0.040000	0.562189	
mm_143868.1	chr17	84186714	84186914	-	1	NA	NA	NA	1133	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.085000	0.666667	
mm_46292.1	chr5	100414560	100414760	-	1	NA	NA	NA	1574	NM_026969	69162	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	0.015000	0.353234	
mm_82585.1	chr9	21237059	21237259	-	1	NA	NA	NA	2173	NM_016679	50868	Mm.248266	NM_016679	ENSMUSG00000003308	Keap1	INRF2|mKIAA0132	kelch-like ECH-associated protein 1	protein-coding	0.075000	0.601990	
mm_125683.1	chr15	66798602	66798802	+	1	NA	NA	NA	33127	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.005000	0.457711	
mm_107400.1	chr12	33337319	33337519	+	1	NA	NA	NA	34904	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.020000	0.467662	-38(CCTTTTAAACAC,+,0.00)
mm_8471.1	chr1	153332925	153333125	-	1	NA	NA	NA	-239	NM_010683	226519	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	0.095000	0.741294	
mm_119221.1	chr14	33225340	33225540	+	1	NA	NA	NA	8617	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.005000	0.353234	
mm_48261.1	chr5	137871632	137871832	-	1	NA	NA	NA	26	NM_001024932	545812	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.010000	0.537313	
mm_113038.1	chr13	23554931	23555131	+	1	NA	NA	NA	-1	NM_145713	14957	Mm.247046	NM_145713	ENSMUSG00000052565	Hist1h1d	H1.3|H1D|H1f3|H1s-4	histone cluster 1, H1d	protein-coding	0.065000	0.557214	-30(CTCTATATAAAC,-,0.00)
mm_116765.1	chr13	52587792	52587992	-	1	NA	NA	NA	4455	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.015000	0.497512	
mm_95324.1	chr11	46480210	46480410	+	1	NA	NA	NA	25379	NM_134250	171285	Mm.72168	NM_134250	ENSMUSG00000020399	Havcr2	TIM-3|Tim3|Timd3	hepatitis A virus cellular receptor 2	protein-coding	0.005000	0.492537	
mm_110638.1	chr12	57546687	57546887	-	1	NA	NA	NA	-666	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.060000	0.532338	
mm_80901.1	chr9	100393219	100393419	+	1	NA	NA	NA	93154	NM_001033543	213208	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.015000	0.487562	
mm_130295.1	chr15	97013470	97013670	-	1	NA	NA	NA	42386	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.035000	0.417910	
mm_133275.1	chr16	77389878	77390078	+	1	NA	NA	NA	60650	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.000000	0.328358	
mm_64565.1	chr7	144896368	144896568	+	1	NA	NA	NA	-64	NM_008003	14170	Mm.3904	NM_008003	ENSMUSG00000031073	Fgf15	FGF19	fibroblast growth factor 15	protein-coding	0.085000	0.656716	30(ACGTATATAAGG,-,0.00)
mm_116776.1	chr13	52980955	52981155	-	1	NA	NA	NA	-16	NM_017373	18030	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0.210000	0.820896	
mm_147555.1	chr18	54961557	54961757	-	1	NA	NA	NA	28523	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.005000	0.472637	
mm_139850.1	chr17	69417353	69417553	+	1	NA	NA	NA	1006	NR_026848	77533	Mm.266592	NR_026848		C030034I22Rik	-	RIKEN cDNA C030034I22 gene	ncRNA	0.115000	0.686567	
mm_158683.1	chrX	160338437	160338637	-	1	NA	NA	NA	-52153	NM_001079847	237175	Mm.213016	NM_178712	ENSMUSG00000031298	Adgrg2	AW212196|B830041D06Rik|Gpr64|Me6	adhesion G protein-coupled receptor G2	protein-coding	0.010000	0.407960	
mm_103306.1	chr11	72795724	72795924	-	1	NA	NA	NA	15	NM_001024926	192986	Mm.194755	NM_001024926	ENSMUSG00000057778	Cyb5d2	9330151E16Rik|Gm2	cytochrome b5 domain containing 2	protein-coding	0.055000	0.557214	
mm_37128.1	chr4	116685310	116685510	-	1	NA	NA	NA	-189	NM_011034	18477	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0.045000	0.592040	
mm_142564.1	chr17	46645961	46646161	-	1	NA	NA	NA	-160	NM_001316742	27398	Mm.391007	NM_025302	ENSMUSG00000002767	Mrpl2	CGI-22|L2mt|MRP-L14|MRP-L2|Rpml14	mitochondrial ribosomal protein L2	protein-coding	0.070000	0.606965	
mm_33657.1	chr4	133117096	133117296	+	1	NA	NA	NA	-13437	NM_153423	242687	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.005000	0.562189	
mm_53630.1	chr6	140526916	140527116	+	1	NA	NA	NA	-95647	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.005000	0.388060	
mm_28666.1	chr3	95281629	95281829	-	1	NA	NA	NA	347	NM_173347	229589	Mm.14155	NM_173347	ENSMUSG00000015711	Prune1	9230112O05Rik|C130058A12|DRES-17|HTCD37|PRUNEM1|Prune|Prune-M1	prune exopolyphosphatase	protein-coding	0.085000	0.676617	
mm_152950.1	chr19	29021783	29021983	-	1	NA	NA	NA	-25600	NR_028360	67329	Mm.394933	NR_028360		1700018L02Rik	-	RIKEN cDNA 1700018L02 gene	ncRNA	0.010000	0.462687	
mm_125344.1	chr15	39112846	39113046	+	1	NA	NA	NA	72	NM_198606	223499	Mm.321937	NM_198606	ENSMUSG00000022300	Dcaf13	Gm83|Wdsof1	DDB1 and CUL4 associated factor 13	protein-coding	0.080000	0.597015	-6(CGGTTTAAAGGC,-,0.00)
mm_93734.1	chr10	120112829	120113029	-	1	NA	NA	NA	36	NM_080446	117599	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.085000	0.601990	
mm_165358.1	chr2	122160597	122160797	+	1	NA	NA	NA	-3	NM_080510	70928	Mm.379188	NM_080510	ENSMUSG00000033368	Trim69	4921519C19Rik|Rnf36|Trif|Trimless	tripartite motif-containing 69	protein-coding	0.015000	0.457711	
mm_167260.1	chr8	25976624	25976824	-	1	NA	NA	NA	20	NM_029884	52120	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	0.125000	0.751244	
mm_39450.1	chr5	17574445	17574645	+	1	NA	NA	NA	-271	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.100000	0.716418	
mm_36374.1	chr4	76558959	76559159	-	1	NA	NA	NA	-1280773	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.005000	0.373134	
mm_31915.1	chr4	85205356	85205556	+	1	NA	NA	NA	0	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.145000	0.761194	-64(CCCTTTAAGAGG,-,0.00),-63(CCTTTAAGAGGC,+,0.00)
mm_125323.1	chr15	38455276	38455476	+	1	NA	NA	NA	35171	NR_105916	102465574		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.015000	0.537313	
mm_12127.1	chr2	61644208	61644408	+	1	NA	NA	NA	51211	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.005000	0.283582	-93(GTCCATAAAAGC,-,0.00)
mm_118664.1	chr14	21838331	21838531	+	1	NA	NA	NA	6870	NM_011695	22334	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0.010000	0.417910	
mm_149745.1	chr19	22448113	22448313	+	1	NA	NA	NA	5	NM_177341	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.030000	0.552239	
mm_72813.1	chr8	87563758	87563958	+	1	NA	NA	NA	-49	NM_177901	330820	Mm.212913	NM_177901	ENSMUSG00000069971	4933402J07Rik	-	RIKEN cDNA 4933402J07 gene	protein-coding	0.005000	0.497512	
mm_115221.1	chr13	109685421	109685621	+	1	NA	NA	NA	-218288	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.040000	0.467662	
mm_49243.1	chr6	17307180	17307380	+	1	NA	NA	NA	-360	NM_001243064	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.010000	0.542289	41(GGGTTTTAAAAG,-,0.00),42(GGTTTTAAAAGG,-,0.00),43(GTTTTAAAAGGG,+,0.00)
mm_86047.1	chr9	114501134	114501334	-	1	NA	NA	NA	-4690	NM_009916	12773	Mm.1337	NM_009916	ENSMUSG00000047898	Ccr4	C-C CKR-4|CHEMR1|Cmkbr4|LESTR|Sdf1r	chemokine (C-C motif) receptor 4	protein-coding	0.035000	0.507463	
mm_43407.1	chr5	135887855	135888055	+	1	NA	NA	NA	36	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.045000	0.601990	-35(CCATTAATAGAG,+,0.00)
mm_142869.1	chr17	51815707	51815907	-	1	NA	NA	NA	-3753	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.000000	0.328358	
mm_108043.1	chr12	73902540	73902740	+	1	NA	NA	NA	1316	NM_001313920	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.000000	0.462687	
mm_23938.1	chr3	84335467	84335667	+	1	NA	NA	NA	-30792	NM_001271726	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.030000	0.482587	
mm_33035.1	chr4	122835959	122836159	+	1	NA	NA	NA	-168	NM_008917	19063	Mm.277719	NM_008917	ENSMUSG00000028657	Ppt1	9530043G02Rik|AA960502|C77813|CLN1|D4Ertd184e|INCL|PPT	palmitoyl-protein thioesterase 1	protein-coding	0.020000	0.412935	65(GCCCTTATATAG,-,0.00),67(CCTTATATAGTA,+,0.00)
mm_149670.1	chr19	18840545	18840745	+	1	NA	NA	NA	90662	NM_153417	225997	Mm.215171	NM_153417	ENSMUSG00000024727	Trpm6	CHAK2|TRPM6/CHAK2	transient receptor potential cation channel, subfamily M, member 6	protein-coding	0.005000	0.393035	6(CCCTTTAAGACC,+,0.00),7(CCTTTAAGACCT,+,0.00)
mm_145067.1	chr18	40792615	40792815	+	1	NA	NA	NA	534354	NM_026135	383348	Mm.76366	NM_026135	ENSMUSG00000051401	Kctd16	4930434H12Rik|Gm1267	potassium channel tetramerisation domain containing 16	protein-coding	0.025000	0.467662	
mm_109142.1	chr12	107124349	107124549	+	1	NA	NA	NA	-408125	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.050000	0.572139	
mm_29953.1	chr3	133091934	133092134	-	1	NA	NA	NA	179	NM_027927	71793	Mm.246726	NM_027927	ENSMUSG00000028016	Ints12	1110020M19Rik|2810027J24Rik|4930529N21Rik|A230056J18Rik|AI666778|Phf22|int12	integrator complex subunit 12	protein-coding	0.110000	0.716418	
mm_99515.1	chr11	103104703	103104903	+	1	NA	NA	NA	3115	NM_025988	67131	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	0.010000	0.562189	
mm_164758.1	chr17	84235769	84235969	+	1	NA	NA	NA	-47922	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.010000	0.373134	-24(CCTTTTATAAGC,+,0.00),-24(CCTTTTATAAGC,-,0.00)
mm_47976.1	chr5	135910688	135910888	-	1	NA	NA	NA	22869	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.035000	0.502488	
mm_138057.1	chr17	33928103	33928303	+	1	NA	NA	NA	-1691	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.010000	0.437811	
mm_50979.1	chr6	62056959	62057159	+	1	NA	NA	NA	-876249	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA	0.005000	0.363184	
mm_80342.1	chr9	75081038	75081238	+	1	NA	NA	NA	9932	NM_010864	17918	Mm.3645	NM_010864	ENSMUSG00000034593	Myo5a	9630007J19Rik|AI413174|AI661011|Dbv|MVa|Myo5|MyoVA|Sev-1|d|d-120J|flail|flr	myosin VA	protein-coding	0.005000	0.353234	
mm_152698.1	chr19	17166365	17166565	-	1	NA	NA	NA	173040	NM_001136484	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.020000	0.487562	
mm_170776.1	chr2	167631875	167632075	-	1	NA	NA	NA	30	NM_001311146	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.120000	0.716418	
mm_64690.1	chr7	4521790	4521990	-	1	NA	NA	NA	553	NM_009406	21954	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0.050000	0.646766	
mm_114860.1	chr13	93340146	93340346	+	1	NA	NA	NA	32212	NM_152134	26556	Mm.37533	NM_011982	ENSMUSG00000007617	Homer1	PSD-Zip45|SYN47|Ves-1|homer-1|vesl-1	homer scaffolding protein 1	protein-coding	0.005000	0.358209	55(GTTTCTATAAGC,-,0.00)
mm_38942.1	chr4	150198125	150198325	-	1	NA	NA	NA	2910	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.040000	0.577114	
mm_62638.1	chr7	107664689	107664889	+	1	NA	NA	NA	57945	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.005000	0.577114	
mm_13755.1	chr2	118126598	118126798	+	1	NA	NA	NA	14822	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.020000	0.323383	-76(GTGTCTAAAAAG,-,0.00)
mm_57513.1	chr6	125481718	125481918	-	1	NA	NA	NA	12937	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.020000	0.507463	
mm_22086.1	chr2	168766980	168767180	-	1	NA	NA	NA	121	NM_201395	99377	Mm.434054	NM_175303	ENSMUSG00000027547	Sall4	5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20	sal-like 4 (Drosophila)	protein-coding	0.065000	0.557214	
mm_56341.1	chr6	92860339	92860539	-	1	NA	NA	NA	41002	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	0.005000	0.437811	-32(TCTTATAAACAG,+,0.00)
mm_71856.1	chr8	68906228	68906428	+	1	NA	NA	NA	25773	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.010000	0.348259	
mm_113956.1	chr13	51132181	51132381	+	1	NA	NA	NA	-2037	NM_011462	20729	Mm.188432	NM_011462	ENSMUSG00000021395	Spin1	Spin	spindlin 1	protein-coding	0.000000	0.402985	
mm_55466.1	chr6	67942457	67942657	-	1	NA	NA	NA	-376858	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.005000	0.432836	
mm_27016.1	chr3	26027188	26027388	-	1	NA	NA	NA	126019	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.010000	0.427861	
mm_126752.1	chr15	85772060	85772260	+	1	NA	NA	NA	36384	NM_011144	19013	Mm.212789	NM_011144	ENSMUSG00000022383	Ppara	4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar	peroxisome proliferator activated receptor alpha	protein-coding	0.020000	0.393035	
mm_13938.1	chr2	121170079	121170279	+	1	NA	NA	NA	946	NM_001290819	99334	Mm.188422	NM_178889	ENSMUSG00000050619	Zscan29	AW125441|Zfp690	zinc finger SCAN domains 29	protein-coding	0.015000	0.462687	
mm_121750.1	chr14	18894169	18894369	-	1	NA	NA	NA	-642	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0.035000	0.616915	
mm_116191.1	chr13	31438215	31438415	-	1	NA	NA	NA	-119855	NM_008239	15220	Mm.44235	NM_008239	ENSMUSG00000038415	Foxq1	HFH-1|Hfh1|Hfh1l|sa	forkhead box Q1	protein-coding	0.015000	0.527363	
mm_26235.1	chr3	141214377	141214577	+	1	NA	NA	NA	-2122	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding	0.000000	0.313433	
mm_85743.1	chr9	108567248	108567448	-	1	NA	NA	NA	-6	NM_023247	66706	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	0.075000	0.626866	
mm_138842.1	chr17	40298102	40298302	+	1	NA	NA	NA	21005	NM_009638	11571	Mm.16781	NM_009638	ENSMUSG00000025431	Crisp1	AW324342|Aeg1|CRISP-1	cysteine-rich secretory protein 1	protein-coding	0.005000	0.338308	
mm_29527.1	chr3	116645624	116645824	-	1	NA	NA	NA	16953	NM_008246	15247	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	0.010000	0.412935	
mm_123689.1	chr14	69636750	69636950	-	1	NA	NA	NA	27374	NM_033325	94352	Mm.116714	NM_033325	ENSMUSG00000034205	Loxl2	1110004B06Rik|4930526G11Rik|9430067E15Rik	lysyl oxidase-like 2	protein-coding	0.015000	0.492537	
mm_169045.1	chr1	3150782	3150982	+	1	NA	NA	NA	520616	NM_001011874	497097	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.025000	0.492537	
mm_24195.1	chr3	88607650	88607850	+	1	NA	NA	NA	-8457	NM_001198911	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.557214	
mm_153269.1	chr19	37174828	37175028	-	1	NA	NA	NA	1085	NR_045329	319931	Mm.446730	NR_045329	ENSMUSG00000097591	A330032B11Rik	-	RIKEN cDNA A330032B11 gene	ncRNA	0.045000	0.587065	
mm_17879.1	chr2	34961497	34961697	-	1	NA	NA	NA	175	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.080000	0.716418	
mm_168261.1	chr10	87686120	87686320	+	1	NA	NA	NA	164425	NM_008777	18478	Mm.263539	NM_008777	ENSMUSG00000020051	Pah	AW106920	phenylalanine hydroxylase	protein-coding	0.010000	0.497512	59(CCTTTTATAAAG,+,0.00)
mm_146602.1	chr18	9508125	9508325	-	1	NA	NA	NA	-58075	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.000000	0.447761	
mm_99492.1	chr11	102775125	102775325	+	1	NA	NA	NA	13790	NM_001110778	11488	Mm.89854	NM_009613	ENSMUSG00000020926	Adam11	AW060611|Mdc	a disintegrin and metallopeptidase domain 11	protein-coding	0.025000	0.502488	
mm_157736.1	chrX	71816558	71816758	-	1	NA	NA	NA	-100	NM_001081356	67048	Mm.41102	NM_001081356	ENSMUSG00000073131	Vma21	2610030H06Rik|AI840175	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)	protein-coding	0.130000	0.686567	
mm_153584.1	chr19	43504490	43504690	-	1	NA	NA	NA	20015	NM_010324	14718	Mm.19039	NM_010324	ENSMUSG00000025190	Got1	AI789014|Got-1|cAspAT|cCAT	glutamic-oxaloacetic transaminase 1, soluble	protein-coding	0.045000	0.577114	53(AGCTCTTTAAGG,-,0.00),55(CTCTTTAAGGAG,+,0.00)
mm_117641.1	chr13	92529885	92530085	-	1	NA	NA	NA	825	NM_173392	218441	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	0.010000	0.328358	54(GTTTTTAAAAGC,+,0.00),54(GTTTTTAAAAGC,-,0.00)
mm_78160.1	chr9	21027885	21028085	+	1	NA	NA	NA	-1388	NM_023892	78369	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.000000	0.567164	
mm_59210.1	chr7	24530729	24530929	+	1	NA	NA	NA	181	NM_153134	210146	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	0.045000	0.577114	
mm_22571.1	chr3	10205136	10205336	+	1	NA	NA	NA	3340	NM_024406	11770	Mm.582	NM_024406	ENSMUSG00000062515	Fabp4	422/aP2|ALBP/Ap2|Ap2|Lbpl	fatty acid binding protein 4, adipocyte	protein-coding	0.020000	0.457711	
mm_39161.1	chr4	155601716	155601916	-	1	NA	NA	NA	400	NM_177186	320541	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	0.090000	0.656716	
mm_44203.1	chr5	3802767	3802967	-	1	NA	NA	NA	257	NM_001289528	70797	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	0.155000	0.771144	
mm_30740.1	chr4	14284335	14284535	+	1	NA	NA	NA	6874	NR_131155	100040030	Mm.366499	NR_131155		Gm2560	-	predicted gene 2560	ncRNA	0.010000	0.323383	
mm_78409.1	chr9	30426918	30427118	+	1	NA	NA	NA	-311	NM_028874	102607	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	0.100000	0.691542	
mm_5492.1	chr1	36939460	36939660	-	1	NA	NA	NA	-33	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.125000	0.726368	-97(GCCCCTTAGAGG,-,0.00),-96(CCCCTTAGAGGC,+,0.00)
mm_56136.1	chr6	87722694	87722894	-	1	NA	NA	NA	-8075	NM_001159697	58229	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.035000	0.621891	
mm_131950.1	chr16	24393636	24393836	+	1	NA	NA	NA	-81	NR_037954	68841	Mm.361995	NR_037954		Lppos	1110054M08Rik|AI481106	LIM domain containing preferred translocation partner in lipoma, opposite strand	ncRNA	0.150000	0.800995	
mm_102151.1	chr11	53656797	53656997	-	1	NA	NA	NA	-22195	NM_008355	16163	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	0.010000	0.472637	
mm_55992.1	chr6	86003510	86003710	-	1	NA	NA	NA	-13581	NM_012013	26910	Mm.8024	NM_012013	ENSMUSG00000030001	Figla	FIGalpha|bHLHc8	folliculogenesis specific basic helix-loop-helix	protein-coding	0.040000	0.601990	
mm_42607.1	chr5	117841805	117842005	+	1	NA	NA	NA	-24934	NM_008712	18125	Mm.44249	NM_008712	ENSMUSG00000029361	Nos1	2310005C01Rik|N-NOS|NC-NOS|NO|NOS|NOS-I|Nos-1|bNOS|nNOS	nitric oxide synthase 1, neuronal	protein-coding	0.085000	0.592040	
mm_151012.1	chr19	46707647	46707847	+	1	NA	NA	NA	304	NM_020577	57344	Mm.28566	NM_020577	ENSMUSG00000003559	As3mt	2310045H08Rik|Cyt19	arsenic (+3 oxidation state) methyltransferase	protein-coding	0.050000	0.597015	
mm_18143.1	chr2	45059478	45059678	-	1	NA	NA	NA	-36401	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.005000	0.288557	
mm_104222.1	chr11	88456625	88456825	-	1	NA	NA	NA	103952	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	0.000000	0.343284	
mm_23259.1	chr3	51415868	51416068	+	1	NA	NA	NA	-48	NM_053089	74838	Mm.275281	NM_053089	ENSMUSG00000063273	Naa15	5730450D16Rik|6330400I15|ASTBDN|Narg1|Tbdn-1|mNAT1	N(alpha)-acetyltransferase 15, NatA auxiliary subunit	protein-coding	0.120000	0.706468	
mm_127727.1	chr15	103243911	103244111	+	1	NA	NA	NA	3557	NR_002883	434858	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.010000	0.422886	
mm_172850.1	chr9	36626928	36627128	+	1	NA	NA	NA	11574	NM_001033325	235973	Mm.118804	NM_001033325	ENSMUSG00000070313	A630095E13Rik	Gm191|Pate14|Sslp-1|Sslp1	RIKEN cDNA A630095E13 gene	protein-coding	0.010000	0.537313	
mm_104052.1	chr11	86358148	86358348	-	1	NA	NA	NA	-723	NM_001080931	327987	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0.085000	0.641791	-39(CGCCATTAAAGC,-,0.00)
mm_797.1	chr1	45347108	45347308	+	1	NA	NA	NA	35670	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.005000	0.442786	-48(TGCTATAAAAGT,-,0.00)
mm_143043.1	chr17	56830861	56831061	-	1	NA	NA	NA	47	NM_009056	19725	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0.160000	0.761194	
mm_105141.1	chr11	101459690	101459890	-	1	NA	NA	NA	6409	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.025000	0.611940	
mm_142002.1	chr17	35199574	35199774	-	1	NA	NA	NA	2333	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.010000	0.417910	
mm_20479.1	chr2	129629892	129630092	-	1	NA	NA	NA	36823	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.020000	0.517413	62(GGATCTAAAAGA,-,0.00)
mm_172820.1	chr9	12808414	12808614	-	1	NA	NA	NA	297341	NR_040755	78219	Mm.414868	NR_040755	ENSMUSG00000111830	4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA	0.070000	0.661692	
mm_4652.1	chr1	180334733	180334933	+	1	NA	NA	NA	-4284	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.020000	0.402985	
mm_128277.1	chr15	36811162	36811362	-	1	NA	NA	NA	-14333	NM_001253806	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.020000	0.542289	
mm_33237.1	chr4	127023243	127023443	+	1	NA	NA	NA	2042	NM_023603	71514	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|OTTMUSG00000009329|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.030000	0.452736	
mm_53460.1	chr6	134830934	134831134	+	1	NA	NA	NA	835	NM_177687	232430	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	0.015000	0.363184	
mm_131006.1	chr15	103562741	103562941	-	1	NA	NA	NA	2240	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.015000	0.467662	
mm_41245.1	chr5	88781867	88782067	+	1	NA	NA	NA	16954	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.010000	0.388060	
mm_59208.1	chr7	24530569	24530769	+	1	NA	NA	NA	21	NM_153134	210146	Mm.41108	NM_153134	ENSMUSG00000041037	Irgq	AF322649|FKSG27|Irgq1	immunity-related GTPase family, Q	protein-coding	0.050000	0.552239	
mm_172527.1	chr7	85023508	85023708	-	1	NA	NA	NA	-11588	NM_001033878	233437	Mm.424396	NM_001033878	ENSMUSG00000094950	Vmn2r66	F830104D24Rik	vomeronasal 2, receptor 66	protein-coding	0.025000	0.522388	
mm_57153.1	chr6	122730008	122730208	-	1	NA	NA	NA	12637	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.035000	0.492537	
mm_170378.1	chr1	85598678	85598878	-	1	NA	NA	NA	32	NM_030194	109032	Mm.335802	NM_030194	ENSMUSG00000070034	Sp110	5031415C07Rik|52kDa|5830484A20Rik|ENSMUSG00000075603|Ifi75|Ipr1	Sp110 nuclear body protein	protein-coding	0.020000	0.557214	
mm_93095.1	chr10	89686132	89686332	-	1	NA	NA	NA	53	NM_198021	213326	Mm.27651	NM_198021	ENSMUSG00000069539	Scyl2	AU015688|AW536445|BC030932|CVAK104|D10Ertd802e	SCY1-like 2 (S. cerevisiae)	protein-coding	0.080000	0.636816	
mm_8650.1	chr1	156441327	156441527	-	1	NA	NA	NA	-20512	NM_001346967	77352	Mm.428709	NM_001033180	ENSMUSG00000026601	Axdnd1	9430070O13Rik|Gm979	axonemal dynein light chain domain containing 1	protein-coding	0.010000	0.487562	
mm_113772.1	chr13	44840676	44840876	+	1	NA	NA	NA	109505	NM_001205043	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.030000	0.557214	
mm_139445.1	chr17	55445586	55445786	+	1	NA	NA	NA	-31	NM_172829	240119	Mm.311687	NM_172829	ENSMUSG00000024172	St6gal2	C230064G14Rik|St6galII|mKIAA1877	beta galactoside alpha 2,6 sialyltransferase 2	protein-coding	0.120000	0.711443	-41(GCCTTTTTAGGC,-,0.00)
mm_27449.1	chr3	52009045	52009245	-	1	NA	NA	NA	95861	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.005000	0.487562	
mm_173161.1	chrX	38667996	38668196	-	1	NA	NA	NA	-32953	NM_021550	59048	Mm.441410	NM_021550	ENSMUSG00000048970	C1galt1c1	1500002I11Rik|AB030184|C1GalT2|C81205|Cosmc	C1GALT1-specific chaperone 1	protein-coding	0.040000	0.482587	
mm_164310.1	chr15	103897404	103897604	-	1	NA	NA	NA	1796	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.010000	0.398010	
mm_77730.1	chr8	126855803	126856003	-	1	NA	NA	NA	90018	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.015000	0.497512	
mm_92042.1	chr10	62494796	62494996	-	1	NA	NA	NA	-8091	NM_133672	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.015000	0.402985	
mm_3227.1	chr1	135848763	135848963	+	1	NA	NA	NA	8002	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.050000	0.582090	
mm_113941.1	chr13	49732354	49732554	+	1	NA	NA	NA	50324	NM_172015	105148	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	0.030000	0.562189	
mm_49459.1	chr6	29399105	29399305	+	1	NA	NA	NA	279	NM_001201378	232664	Mm.251303	NM_145574	ENSMUSG00000029769	Ccdc136	4921511K06Rik|BC006583	coiled-coil domain containing 136	protein-coding	0.005000	0.547264	14(CTCTATATGAGG,-,0.00)
mm_41196.1	chr5	88328035	88328235	+	1	NA	NA	NA	10823	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.015000	0.482587	
mm_4940.1	chr1	191183399	191183599	+	1	NA	NA	NA	-166	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.110000	0.676617	
mm_33722.1	chr4	134065600	134065800	+	1	NA	NA	NA	-2752	NM_001162970	230806	Mm.240080	NM_001162970	ENSMUSG00000012123	Aim1l	-	absent in melanoma 1-like	protein-coding	0.045000	0.646766	
mm_134886.1	chr16	29378604	29378804	-	1	NA	NA	NA	28	NM_001284375	268878	Mm.9823	NM_175650	ENSMUSG00000048939	Atp13a5	C630015F21Rik	ATPase type 13A5	protein-coding	0.015000	0.442786	
mm_151717.1	chr19	4773970	4774170	-	1	NA	NA	NA	17545	NM_025717	66704	Mm.396734	NM_025717	ENSMUSG00000033760	Rbm4b	4921506I22Rik|AI504630|AI506404|Lark2|Neosin	RNA binding motif protein 4B	protein-coding	0.010000	0.363184	-29(GTCCTGATAAGG,-,0.00)
mm_7624.1	chr1	127242159	127242359	-	1	NA	NA	NA	37273	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.015000	0.467662	
mm_56851.1	chr6	117937592	117937792	-	1	NA	NA	NA	-357	NM_001173372	108017	Mm.250392	NM_033648	ENSMUSG00000004988	Fxyd4	0610008I02Rik|AI267073|Chif	FXYD domain-containing ion transport regulator 4	protein-coding	0.010000	0.477612	
mm_142687.1	chr17	47734254	47734454	-	1	NA	NA	NA	-2683	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.020000	0.552239	
mm_104147.1	chr11	87073963	87074163	-	1	NA	NA	NA	74	NM_025638	66569	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	0.115000	0.696517	
mm_169019.1	chr13	111593547	111593747	-	1	NA	NA	NA	-92531	NM_172593	218613	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0.035000	0.427861	-26(CACTATAAAAGA,-,0.00)
mm_154965.1	chrX	37048711	37048911	+	1	NA	NA	NA	-34	NM_173779	245381	Mm.123697	NM_173779	ENSMUSG00000044400	Sowahd	A630014H24Rik|Ankrd58	sosondowah ankyrin repeat domain family member D	protein-coding	0.055000	0.666667	
mm_58490.1	chr7	3693669	3693869	+	1	NA	NA	NA	159	NM_001164205	66078	Mm.379100	NM_024168	ENSMUSG00000035585	Tsen34	0610027F08Rik|Leng5	tRNA splicing endonuclease subunit 34	protein-coding	0.070000	0.567164	
mm_77325.1	chr8	119424253	119424453	-	1	NA	NA	NA	-12809	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.020000	0.522388	-31(CCTTTAATAGCA,+,0.00)
mm_86482.1	chr10	4862217	4862417	+	1	NA	NA	NA	152159	NM_001302533	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.005000	0.353234	-12(AACTATAAAGGG,-,0.00),39(GCCTATATAGGA,+,0.00),39(GCCTATATAGGA,-,0.00)
mm_45705.1	chr5	83355003	83355203	-	1	NA	NA	NA	92	NM_153801	243078	Mm.126783	NM_153801	ENSMUSG00000049537	Tecrl	D330017N19Rik|Srd5a2l2	trans-2,3-enoyl-CoA reductase-like	protein-coding	0.015000	0.457711	
mm_41173.1	chr5	88002460	88002660	+	1	NA	NA	NA	35	NM_011422	20599	Mm.261199	NM_011422	ENSMUSG00000029280	Smr3a	AA589601|MSG1|MSG3|Smr1|Smr3	submaxillary gland androgen regulated protein 3A	protein-coding	0.010000	0.402985	
mm_57399.1	chr6	124863837	124864037	-	1	NA	NA	NA	-20	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.080000	0.711443	
mm_165279.1	chr2	81087227	81087427	+	1	NA	NA	NA	448063	NM_001190179	69482	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	0.005000	0.462687	
mm_44696.1	chr5	30407955	30408155	-	1	NA	NA	NA	53877	NM_001286421	83762	Mm.244502	NM_031875	ENSMUSG00000062372	Otof	-	otoferlin	protein-coding	0.015000	0.562189	
mm_39066.1	chr4	154081466	154081666	-	1	NA	NA	NA	15607	NM_001126330	22062	Mm.78015	NM_011642	ENSMUSG00000029026	Trp73	TAp73|Tp73|deltaNp73|p73	transformation related protein 73	protein-coding	0.065000	0.666667	
mm_23111.1	chr3	37481382	37481582	+	1	NA	NA	NA	61532	NM_021343	57815	Mm.172679	NM_021343	ENSMUSG00000027722	Spata5	2510048F20Rik|C78064|Spaf	spermatogenesis associated 5	protein-coding	0.095000	0.651741	
mm_17431.1	chr2	27507512	27507712	-	1	NA	NA	NA	-7535	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.015000	0.557214	
mm_3660.1	chr1	153351247	153351447	+	1	NA	NA	NA	-18561	NM_010683	226519	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	0.005000	0.427861	
mm_23535.1	chr3	60805943	60806143	+	1	NA	NA	NA	-196742	NM_008772	18441	Mm.281452	NM_008772	ENSMUSG00000027765	P2ry1	P2Y1	purinergic receptor P2Y, G-protein coupled 1	protein-coding	0.010000	0.363184	
mm_45386.1	chr5	66142854	66143054	-	1	NA	NA	NA	8024	NM_001291226	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.000000	0.393035	
mm_54113.1	chr6	17634871	17635071	-	1	NA	NA	NA	-2127	NM_007604	12343	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.005000	0.373134	
mm_22694.1	chr3	17794218	17794418	+	1	NA	NA	NA	-1344	NR_029814	723950		NR_029814	ENSMUSG00000093073	Mir124a-2	Mirn124a-2|mir-124-2|mir-124a-2	microRNA 124a-2	ncRNA	0.055000	0.542289	
mm_162783.1	chr10	70097144	70097344	+	1	NA	NA	NA	123	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.210000	0.860697	
mm_89658.1	chr10	97483242	97483442	+	1	NA	NA	NA	1011	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.005000	0.422886	
mm_59552.1	chr7	28075083	28075283	+	1	NA	NA	NA	3947	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.025000	0.587065	
mm_18936.1	chr2	76752393	76752593	-	1	NA	NA	NA	77178	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.010000	0.457711	
mm_143439.1	chr17	70852702	70852902	-	1	NA	NA	NA	730	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.060000	0.636816	
mm_107064.1	chr12	16810859	16811059	+	1	NA	NA	NA	-6	NR_027677	50496	Mm.23296	NM_033270	ENSMUSG00000057469	E2f6	AI462434|E2F6a|E2F6b|EMA	E2F transcription factor 6	protein-coding	0.115000	0.701493	
mm_96050.1	chr11	59564512	59564712	+	1	NA	NA	NA	7126	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.005000	0.532338	
mm_42352.1	chr5	114911460	114911660	+	1	NA	NA	NA	-11680	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.010000	0.447761	
mm_18101.1	chr2	44988003	44988203	-	1	NA	NA	NA	35074	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.020000	0.328358	
mm_107817.1	chr12	65225652	65225852	+	1	NA	NA	NA	235	NM_027614	70948	Mm.219475	NM_027614	ENSMUSG00000035560	Wdr20rt	4921538B03Rik|4930427E19Rik|Wdr20|Wdr20b	WD repeat domain 20, retrogene	protein-coding	0.065000	0.537313	
mm_31878.1	chr4	80932043	80932243	+	1	NA	NA	NA	21457	NM_026821	52829	Mm.273986	NM_026821	ENSMUSG00000048706	Lurap1l	1110029A09Rik|AV077978|AV175137|D4Bwg0951e|WI-13707|bM350F23.1	leucine rich adaptor protein 1-like	protein-coding	0.010000	0.402985	25(GACTATTTAAGG,-,0.00)
mm_118911.1	chr14	26673080	26673280	+	1	NA	NA	NA	-3334	NM_178668	211948	Mm.290758	NM_178668	ENSMUSG00000043702	Pde12	2'-PDE|E430028B21Rik	phosphodiesterase 12	protein-coding	0.000000	0.293532	
mm_1406.1	chr1	67152595	67152795	+	1	NA	NA	NA	29668	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.343284	
mm_114076.1	chr13	54503666	54503866	+	1	NA	NA	NA	-39	NM_176987	319719	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	0.145000	0.771144	
mm_47704.1	chr5	129887048	129887248	-	1	NA	NA	NA	322	NM_024166	14004	Mm.30133	NM_024166	ENSMUSG00000070493	Chchd2	AL033347|Etohi6	coiled-coil-helix-coiled-coil-helix domain containing 2	protein-coding	0.105000	0.691542	
mm_53092.1	chr6	125008921	125009121	+	1	NA	NA	NA	-217	NM_001252083	269800	Mm.108677	NM_175557	ENSMUSG00000038346	Zfp384	BB163993|C130073D16Rik|Ciz|NP|Nmp4	zinc finger protein 384	protein-coding	0.075000	0.631841	
mm_163053.1	chr11	58421572	58421772	+	1	NA	NA	NA	561	NM_027239	69864	Mm.45641	NM_027239	ENSMUSG00000013653	1810065E05Rik	AV047390	RIKEN cDNA 1810065E05 gene	protein-coding	0.025000	0.512438	
mm_141202.1	chr17	27028824	27029024	-	1	NA	NA	NA	-298	NM_007523	12018	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	0.005000	0.527363	-33(TCTTTTAGGGTG,+,0.00)
mm_42157.1	chr5	112195398	112195598	+	1	NA	NA	NA	-11265	NR_045377	75569	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	0.015000	0.552239	
mm_64251.1	chr7	141704398	141704598	+	1	NA	NA	NA	14158	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.010000	0.412935	
mm_120238.1	chr14	62917739	62917939	+	1	NA	NA	NA	52297	NR_105860	102465311		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.000000	0.293532	
mm_167196.1	chr7	142660803	142661003	-	1	NA	NA	NA	368	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.100000	0.706468	
mm_108293.1	chr12	79168363	79168563	+	1	NA	NA	NA	3995	NM_016800	53612	Mm.265929	NM_016800	ENSMUSG00000021124	Vti1b	AU015348|GES30|MVti1b|SNARE|Vti1-rp1	vesicle transport through interaction with t-SNAREs 1B	protein-coding	0.000000	0.393035	-56(TCTTTTATGGAC,+,0.00)
mm_131787.1	chr16	22898693	22898893	+	1	NA	NA	NA	-4407	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.020000	0.572139	
mm_71888.1	chr8	69822552	69822752	+	1	NA	NA	NA	87	NM_020028	53978	Mm.23253	NM_020028	ENSMUSG00000031861	Lpar2	Edg4|IPA2|LPA2	lysophosphatidic acid receptor 2	protein-coding	0.070000	0.671642	
mm_46633.1	chr5	108519315	108519515	-	1	NA	NA	NA	30612	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.010000	0.542289	
mm_70733.1	chr8	18846487	18846687	+	1	NA	NA	NA	308	NM_026792	52123	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	0.105000	0.716418	
mm_57499.1	chr6	125351311	125351511	-	1	NA	NA	NA	1688	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.015000	0.412935	
mm_67422.1	chr7	80340045	80340245	-	1	NA	NA	NA	74	NM_133952	101869	Mm.243024	NM_133952	ENSMUSG00000030533	Unc45a	AW538196	unc-45 myosin chaperone A	protein-coding	0.080000	0.626866	
mm_98691.1	chr11	96299021	96299221	+	1	NA	NA	NA	-50	NM_008269	15414	Mm.215	NM_008269	ENSMUSG00000000690	Hoxb6	Hox-2.2	homeobox B6	protein-coding	0.075000	0.572139	
mm_23358.1	chr3	55181910	55182110	+	1	NA	NA	NA	-34	NM_028937	74434	Mm.25514	NM_028937	ENSMUSG00000027794	Sohlh2	4933406N12Rik|AI413378|Sosf2	spermatogenesis and oogenesis specific basic helix-loop-helix 2	protein-coding	0.070000	0.706468	
mm_47240.1	chr5	121521462	121521662	-	1	NA	NA	NA	133	NM_172126	280668	Mm.1453	NM_172126	ENSMUSG00000072647	Adam1a	Adam1|Ftna	a disintegrin and metallopeptidase domain 1a	protein-coding	0.010000	0.502488	
mm_110568.1	chr12	56275616	56275816	-	1	NA	NA	NA	22473	NR_045048	100503961	Mm.136732	NR_045048		Gm19990	-	predicted gene, 19990	ncRNA	0.040000	0.542289	
mm_121635.1	chr14	8368053	8368253	-	1	NA	NA	NA	10610	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.000000	0.552239	
mm_88989.1	chr10	81565620	81565820	+	1	NA	NA	NA	6276	NM_001276288	14797	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.025000	0.592040	
mm_68197.1	chr7	104379913	104380113	-	1	NA	NA	NA	-21367	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.005000	0.268657	
mm_62408.1	chr7	101205301	101205501	+	1	NA	NA	NA	96626	NM_199012	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.000000	0.323383	
mm_146629.1	chr18	10182001	10182201	-	1	NA	NA	NA	-309	NM_009071	19877	Mm.6710	NM_009071	ENSMUSG00000024290	Rock1	1110055K06Rik|Rock-I	Rho-associated coiled-coil containing protein kinase 1	protein-coding	0.090000	0.651741	
mm_99720.1	chr11	106300173	106300373	+	1	NA	NA	NA	1623	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.015000	0.532338	
mm_120294.1	chr14	63138254	63138454	+	1	NA	NA	NA	15892	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.020000	0.557214	
mm_41005.1	chr5	81019624	81019824	+	1	NA	NA	NA	-847	NM_001347367	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.120000	0.761194	
mm_42789.1	chr5	121506810	121507010	+	1	NA	NA	NA	-3930	NM_172125	280667	Mm.444773	NM_172125	ENSMUSG00000062438	Adam1b	Adam1|Ftna	a disintegrin and metallopeptidase domain 1b	protein-coding	0.000000	0.373134	
mm_171881.1	chr5	32854189	32854389	-	1	NA	NA	NA	-59	NM_194340	215476	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	0.110000	0.721393	
mm_76780.1	chr8	97429098	97429298	-	1	NA	NA	NA	-883225	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.050000	0.477612	
mm_151822.1	chr19	5560509	5560709	-	1	NA	NA	NA	-34	NM_019935	18426	Mm.280225	NM_019935	ENSMUSG00000024922	Ovol1	BB147136|Ovo1|movo1	ovo like zinc finger 1	protein-coding	0.095000	0.626866	
mm_135590.1	chr16	50721358	50721558	-	1	NA	NA	NA	-5674	NR_105782	102466634		NR_105782	ENSMUSG00000098482	Mir6363	Gm28026|mmu-mir-6363	microRNA 6363	ncRNA	0.030000	0.432836	
mm_101989.1	chr11	50887394	50887594	-	1	NA	NA	NA	-51	NM_172794	237758	Mm.74335	NM_172794	ENSMUSG00000048728	Zfp454	B230342N19	zinc finger protein 454	protein-coding	0.050000	0.562189	
mm_14535.1	chr2	132781570	132781770	+	1	NA	NA	NA	392	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.100000	0.736318	
mm_84439.1	chr9	66124615	66124815	-	1	NA	NA	NA	171	NM_019727	56440	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	0.075000	0.641791	-96(CTGTCTATAAAG,-,0.00)
mm_69596.1	chr7	135716218	135716418	-	1	NA	NA	NA	61	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.145000	0.771144	
mm_165640.1	chr3	75143671	75143871	-	1	NA	NA	NA	1	NM_001310529	213234	Mm.80075	NM_172515	ENSMUSG00000034151	Zbbx	4931432L23	zinc finger, B-box domain containing	protein-coding	0.010000	0.457711	
mm_51866.1	chr6	90550659	90550859	+	1	NA	NA	NA	-89	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.025000	0.611940	
mm_9683.1	chr1	178333488	178333688	-	1	NA	NA	NA	4196	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.010000	0.318408	
mm_171556.1	chr4	147132008	147132208	+	1	NA	NA	NA	-43758	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.025000	0.502488	
mm_114547.1	chr13	73938035	73938235	+	1	NA	NA	NA	324	NM_001308041	105246	Mm.278509	NM_001024508	ENSMUSG00000057649	Brd9	AL022779	bromodomain containing 9	protein-coding	0.030000	0.542289	
mm_116688.1	chr13	49298708	49298908	-	1	NA	NA	NA	10400	NM_015759	30938	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.015000	0.467662	-98(TCCTTTAAAAAA,-,0.00)
mm_21568.1	chr2	164236008	164236208	-	1	NA	NA	NA	2233	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.010000	0.442786	
mm_48814.1	chr5	148996514	148996714	-	1	NA	NA	NA	-1399	NR_102384	319982	Mm.33303	NR_102383	ENSMUSG00000106951	5930430L01Rik	-	RIKEN cDNA 5930430L01 gene	ncRNA	0.020000	0.636816	
mm_119959.1	chr14	55371070	55371270	+	1	NA	NA	NA	-107588	NM_001037938	28200	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	0.015000	0.457711	
mm_109633.1	chr12	112767738	112767938	+	1	NA	NA	NA	7183	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.035000	0.562189	
mm_141850.1	chr17	34801692	34801892	-	1	NA	NA	NA	2634	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.030000	0.572139	26(GTCTCTTTAAAG,-,0.00)
mm_157063.1	chrX	8145602	8145802	-	1	NA	NA	NA	178	NM_001166410	19652	Mm.128512	NM_016809	ENSMUSG00000031167	Rbm3	2600016C11Rik	RNA binding motif protein 3	protein-coding	0.110000	0.616915	
mm_47242.1	chr5	121527141	121527341	-	1	NA	NA	NA	-5546	NM_172126	280668	Mm.1453	NM_172126	ENSMUSG00000072647	Adam1a	Adam1|Ftna	a disintegrin and metallopeptidase domain 1a	protein-coding	0.025000	0.537313	
mm_109704.1	chr12	113359833	113360033	+	1	NA	NA	NA	-129632	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.015000	0.512438	
mm_145079.1	chr18	42325882	42326082	+	1	NA	NA	NA	50629	NM_172626	225432	Mm.329400	NM_172626	ENSMUSG00000024491	Rbm27	A730010I06|AI043120|Psc1|mKIAA1311	RNA binding motif protein 27	protein-coding	0.000000	0.358209	
mm_92732.1	chr10	80900684	80900884	-	1	NA	NA	NA	185	NM_013895	30055	Mm.142132	NM_013895	ENSMUSG00000020219	Timm13	D10Ertd378e|Tim9|Timm9	translocase of inner mitochondrial membrane 13	protein-coding	0.110000	0.676617	
mm_100140.1	chr11	115982620	115982820	+	1	NA	NA	NA	7995	NM_133663	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.025000	0.567164	
mm_75184.1	chr8	36953005	36953205	-	1	NA	NA	NA	-663	NM_001194940	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.015000	0.482587	
mm_150518.1	chr19	39035538	39035738	+	1	NA	NA	NA	-25368	NM_028191	72303	Mm.482578	NM_028191	ENSMUSG00000067231	Cyp2c65	2210009K14Rik	cytochrome P450, family 2, subfamily c, polypeptide 65	protein-coding	0.005000	0.393035	
mm_47889.1	chr5	134703718	134703918	-	1	NA	NA	NA	-15228	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.020000	0.532338	
mm_79330.1	chr9	53340539	53340739	+	1	NA	NA	NA	38969	NM_176846	320051	Mm.277540	NM_176846	ENSMUSG00000034584	Exph5	AC079869.22gm5|B130009M24Rik|E030050P12|Kiaa0624|Slac2b|slac2-b	exophilin 5	protein-coding	0.030000	0.472637	49(AGCTATTTAAGC,-,0.00)
mm_63000.1	chr7	120739944	120740144	+	1	NA	NA	NA	487	NM_177697	233813	Mm.389939	NM_177697	ENSMUSG00000030889	Vwa3a	E030013G06Rik	von Willebrand factor A domain containing 3A	protein-coding	0.010000	0.512438	
mm_115245.1	chr13	110395876	110396076	+	1	NA	NA	NA	932	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.035000	0.402985	
mm_9336.1	chr1	172004355	172004555	-	1	NA	NA	NA	22840	NM_033509	93840	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	vang-like 2 (van gogh, Drosophila)	protein-coding	0.000000	0.412935	
mm_162344.1	chr1	51249972	51250172	-	1	NA	NA	NA	-39054	NM_138741	20324	Mm.398690	NM_138741	ENSMUSG00000045954	Sdpr	-	serum deprivation response	protein-coding	0.005000	0.353234	88(CTTTTTATGCAG,+,0.00)
mm_149933.1	chr19	26781659	26781859	+	1	NA	NA	NA	33356	NM_026003	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.005000	0.373134	
mm_99898.1	chr11	109650477	109650677	+	1	NA	NA	NA	-344	NM_021880	19084	Mm.30039	NM_021880	ENSMUSG00000020612	Prkar1a	1300018C22Rik|RIalpha|Tse-1|Tse1	protein kinase, cAMP dependent regulatory, type I, alpha	protein-coding	0.045000	0.562189	
mm_92826.1	chr10	81464358	81464558	-	1	NA	NA	NA	8673	NM_001311127	319586	Mm.152689	NM_176954	ENSMUSG00000034818	Celf5	4930565A21Rik|Brunol5	CUGBP, Elav-like family member 5	protein-coding	0.085000	0.711443	
mm_40278.1	chr5	41767561	41767761	+	1	NA	NA	NA	-3441	NM_007524	12020	Mm.2530	NM_007524	ENSMUSG00000049691	Nkx3-2	Bapx1|NKX3.2|Nkx-3.2	NK3 homeobox 2	protein-coding	0.040000	0.562189	-24(CCTTTAAAACCA,+,0.00)
mm_143183.1	chr17	57292311	57292511	-	1	NA	NA	NA	13311	NM_001163815	22324	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.005000	0.527363	
mm_9445.1	chr1	172590436	172590636	-	1	NA	NA	NA	32	NM_029084	74748	Mm.179812	NM_029084	ENSMUSG00000053318	Slamf8	5830408F06Rik|Blame|SBBI42	SLAM family member 8	protein-coding	0.025000	0.527363	
mm_20391.1	chr2	129065808	129066008	-	1	NA	NA	NA	-39	NM_027192	69737	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	0.145000	0.800995	
mm_116983.1	chr13	56296237	56296437	-	1	NA	NA	NA	214	NM_019568	57266	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding	0.100000	0.676617	-87(GAATTTAAAAGA,-,0.00)
mm_48053.1	chr5	136546738	136546938	-	1	NA	NA	NA	19143	NM_001291239	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.005000	0.412935	
mm_73874.1	chr8	119094917	119095117	+	1	NA	NA	NA	-249521	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.020000	0.442786	
mm_130457.1	chr15	98567589	98567789	-	1	NA	NA	NA	-53	NM_009833	12455	Mm.29941	NM_009833	ENSMUSG00000011960	Ccnt1	2810478G24Rik|AI115585|CycT1	cyclin T1	protein-coding	0.090000	0.601990	
mm_151530.1	chr19	58744037	58744237	+	1	NA	NA	NA	15250	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.030000	0.472637	
mm_140657.1	chr17	12769553	12769753	-	1	NA	NA	NA	53	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.120000	0.716418	
mm_66766.1	chr7	46728887	46729087	-	1	NA	NA	NA	3616	NM_011316	20211	Mm.3489	NM_011316	ENSMUSG00000040017	Saa4	Saa-4|Saa-5	serum amyloid A 4	protein-coding	0.020000	0.517413	
mm_84095.1	chr9	58247358	58247558	-	1	NA	NA	NA	2328	NM_178087	18854	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	0.020000	0.577114	
mm_160407.1	chr8	71703434	71703634	-	1	NA	NA	NA	-1734	NM_028189	72297	Mm.290837	NM_028189	ENSMUSG00000031803	B3gnt3	2210008L19Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	protein-coding	0.000000	0.552239	-34(GCTTTAAGACCC,+,0.00)
mm_167328.1	chr8	70310287	70310487	+	1	NA	NA	NA	-5388	NM_138647	93898	Mm.258280	NM_138647	ENSMUSG00000087408	Cers1	Lass1|Uog-1|to	ceramide synthase 1	protein-coding	0.020000	0.597015	
mm_57645.1	chr6	128434691	128434891	-	1	NA	NA	NA	3840	NM_010219	14228	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	59kDa|AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	0.030000	0.487562	
mm_107397.1	chr12	33315420	33315620	+	1	NA	NA	NA	13005	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.025000	0.542289	
mm_162811.1	chr10	79680927	79681127	+	1	NA	NA	NA	-1168	NM_177613	216150	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|UBE2R1	cell division cycle 34	protein-coding	0.005000	0.532338	
mm_108000.1	chr12	73353046	73353246	+	1	NA	NA	NA	56417	NR_046013	380765	Mm.490476	NR_046013		D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0.015000	0.567164	
mm_75871.1	chr8	70764068	70764268	-	1	NA	NA	NA	2495	NM_023065	65972	Mm.30241	NM_023065	ENSMUSG00000031838	Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	0.025000	0.552239	
mm_123851.1	chr14	70766521	70766721	-	1	NA	NA	NA	7	NM_023045	65246	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|mKIAA0745	exportin 7	protein-coding	0.150000	0.761194	
mm_96893.1	chr11	70437221	70437421	+	1	NA	NA	NA	-934	NR_106064	102465670		NR_106064	ENSMUSG00000099109	Mir7115	Gm27902|mmu-mir-7115	microRNA 7115	ncRNA	0.010000	0.487562	
mm_118636.1	chr14	21356219	21356419	+	1	NA	NA	NA	-143451	NM_001205241	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.000000	0.308458	
mm_170608.1	chr19	5845257	5845457	-	1	NA	NA	NA	121	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.025000	0.552239	
mm_156629.1	chrX	155262438	155262638	+	1	NA	NA	NA	95	NM_019736	56360	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	0.070000	0.651741	
mm_152791.1	chr19	21471067	21471267	-	1	NA	NA	NA	1494	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.020000	0.502488	
mm_2163.1	chr1	88226971	88227171	+	1	NA	NA	NA	51	NM_001281466	100040766	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	ENSMUSG00000044873|Heatr7b1|OTTMUSG00000020804	maestro heat-like repeat family member 2A	protein-coding	0.005000	0.472637	
mm_126664.1	chr15	84324098	84324298	+	1	NA	NA	NA	-522	NM_022321	64099	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0.010000	0.547264	-58(CGGTTTATAGGG,-,0.00)
mm_46092.1	chr5	92347010	92347210	-	1	NA	NA	NA	1779	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.020000	0.557214	
mm_160512.1	chr9	21635263	21635463	+	1	NA	NA	NA	19194	NM_001174078	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.025000	0.527363	
mm_59642.1	chr7	28159329	28159529	+	1	NA	NA	NA	-10319	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.015000	0.562189	
mm_22313.1	chr2	180439425	180439625	-	1	NA	NA	NA	-21453	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.015000	0.492537	
mm_132445.1	chr16	35981512	35981712	+	1	NA	NA	NA	-1751	NM_008465	16646	Mm.3991	NM_008465	ENSMUSG00000022905	Kpna1	AW494490|IPOA5|NPI1|Rch2|mSRP1	karyopherin (importin) alpha 1	protein-coding	0.050000	0.472637	34(CCCCAGAAAAGG,-,0.00)
mm_119259.1	chr14	33953897	33954097	+	1	NA	NA	NA	-25	NM_015745	19661	Mm.436622	NM_015745	ENSMUSG00000041534	Rbp3	Irbp|Rbp-3	retinol binding protein 3, interstitial	protein-coding	0.005000	0.532338	
mm_14434.1	chr2	130589358	130589558	+	1	NA	NA	NA	-6870	NM_009732	11998	Mm.6190	NM_009732	ENSMUSG00000037727	Avp	Vp|Vsp	arginine vasopressin	protein-coding	0.015000	0.537313	
mm_66566.1	chr7	45239281	45239481	-	1	NA	NA	NA	-266	NM_001290804	12493	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0.020000	0.601990	
mm_132196.1	chr16	32496163	32496363	+	1	NA	NA	NA	-18	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.005000	0.467662	
mm_69246.1	chr7	127810843	127811043	-	1	NA	NA	NA	10334	NM_001040684	101502	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	0.040000	0.592040	
mm_57717.1	chr6	128788470	128788670	-	1	NA	NA	NA	71	NM_008527	17059	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0.000000	0.487562	
mm_114759.1	chr13	85189400	85189600	+	1	NA	NA	NA	115	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0.140000	0.686567	
mm_79913.1	chr9	65462569	65462769	+	1	NA	NA	NA	1732	NM_138584	27965	Mm.272475	NM_138584	ENSMUSG00000032388	Spg21	ACP33|BM-019|C78576|D9Wsu18e|GL010|MAST	spastic paraplegia 21 homolog (human)	protein-coding	0.015000	0.437811	
mm_135856.1	chr16	59632433	59632633	-	1	NA	NA	NA	-4412	NR_040564	75145	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	0.030000	0.388060	
mm_107484.1	chr12	38545194	38545394	+	1	NA	NA	NA	69227	NR_045943	73867	Mm.78933	NR_045943		4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA	0.000000	0.318408	
mm_136685.1	chr17	6782764	6782964	+	1	NA	NA	NA	-84	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.120000	0.616915	
mm_116656.1	chr13	49190059	49190259	-	1	NA	NA	NA	2612	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.015000	0.601990	
mm_168442.1	chr11	40420431	40420631	-	1	NA	NA	NA	272151	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.020000	0.477612	
mm_62534.1	chr7	102249557	102249757	+	1	NA	NA	NA	461	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.035000	0.626866	
mm_66569.1	chr7	45308593	45308793	-	1	NA	NA	NA	-16265	NR_110499	100040970	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	ENSMUSG00000046721|Gm9811	ribosomal protein L14, pseudogene 1	pseudo	0.030000	0.567164	
mm_132072.1	chr16	30065531	30065731	+	1	NA	NA	NA	274	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hairy and enhancer of split 1 (Drosophila)	protein-coding	0.030000	0.442786	
mm_31222.1	chr4	44018706	44018906	+	1	NA	NA	NA	6156	NM_001290470	12757	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.010000	0.378109	
mm_46362.1	chr5	103347808	103348008	-	1	NA	NA	NA	-48879	NR_040699	74624	Mm.389662	NR_040699	ENSMUSG00000104956	4930429D17Rik	-	RIKEN cDNA 4930429D17 gene	ncRNA	0.020000	0.427861	-24(TCCTTTAAAAAC,-,0.00)
mm_31640.1	chr4	59581449	59581649	+	1	NA	NA	NA	-14	NM_001301367	72479	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0.090000	0.621891	
mm_20354.1	chr2	127975542	127975742	-	1	NA	NA	NA	121014	NM_028765	74121	Mm.244835	NM_028765	ENSMUSG00000027380	Acoxl	1200014P05Rik|AV025673	acyl-Coenzyme A oxidase-like	protein-coding	0.005000	0.547264	
mm_129365.1	chr15	77970637	77970837	-	1	NA	NA	NA	87	NM_018749	55944	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	0.105000	0.651741	
mm_49653.1	chr6	31023458	31023658	+	1	NA	NA	NA	39189	NR_029744	387222		NR_029744	ENSMUSG00000065610	Mir29a	Mirn29a|mir-29a|mmu-mir-29a	microRNA 29a	ncRNA	0.010000	0.373134	
mm_58234.1	chr6	145032728	145032928	-	1	NA	NA	NA	15984	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.020000	0.417910	57(CTCTATTTAGGG,-,0.00)
mm_137045.1	chr17	17916090	17916290	+	1	NA	NA	NA	28366	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.005000	0.373134	
mm_26399.1	chr3	142602247	142602447	+	1	NA	NA	NA	7500	NM_010259	14468	Mm.457978	NM_010259	ENSMUSG00000040264	Gbp2b	Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1	guanylate binding protein 2b	protein-coding	0.000000	0.437811	-75(CTTTTTATAGGA,+,0.00)
mm_98486.1	chr11	94951135	94951335	+	1	NA	NA	NA	15011	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.045000	0.572139	
mm_140317.1	chr17	86338508	86338708	+	1	NA	NA	NA	-51430	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.005000	0.492537	
mm_67005.1	chr7	65213347	65213547	-	1	NA	NA	NA	-56919	NM_183087	70638	Mm.441986	NM_183087	ENSMUSG00000030518	Fam189a1	5730507A09Rik|AW047451	family with sequence similarity 189, member A1	protein-coding	0.020000	0.502488	
mm_15172.1	chr2	154015858	154016058	+	1	NA	NA	NA	7682	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.000000	0.472637	
mm_127624.1	chr15	102462158	102462358	+	1	NA	NA	NA	3088	NM_025385	66151	Mm.393955	NM_025385	ENSMUSG00000023048	Prr13	1110020C13Rik|2010324E22Rik	proline rich 13	protein-coding	0.015000	0.611940	
mm_28330.1	chr3	89365139	89365339	-	1	NA	NA	NA	14	NM_029974	77772	Mm.164013	NM_029974	ENSMUSG00000042672	Dcst1	A330106H01Rik	DC-STAMP domain containing 1	protein-coding	0.025000	0.542289	
mm_42644.1	chr5	118614876	118615076	+	1	NA	NA	NA	54257	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.000000	0.398010	
mm_107940.1	chr12	71889408	71889608	+	1	NA	NA	NA	-35	NM_001286452	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.025000	0.532338	
mm_110242.1	chr12	31090461	31090661	-	1	NA	NA	NA	16593	NM_027828	104943	Mm.248938	NM_027828	ENSMUSG00000036136	Fam110c	9030611O19Rik|AU019489	family with sequence similarity 110, member C	protein-coding	0.015000	0.537313	
mm_155844.1	chrX	101254467	101254667	+	1	NA	NA	NA	39	NM_018789	54601	Mm.240299	NM_018789	ENSMUSG00000042903	Foxo4	Afxh|Mllt7|afx	forkhead box O4	protein-coding	0.060000	0.587065	-34(AGGTTTAAAAGA,-,0.00)
mm_147294.1	chr18	39491458	39491658	-	1	NA	NA	NA	-4313	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.045000	0.616915	
mm_117174.1	chr13	63246148	63246348	-	1	NA	NA	NA	6219	NR_110521	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.005000	0.353234	
mm_5208.1	chr1	13566038	13566238	-	1	NA	NA	NA	23772	NM_028173	72265	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	0.005000	0.383085	
mm_162029.1	chr19	53330205	53330405	+	1	NA	NA	NA	-141	NM_001008543	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.065000	0.666667	
mm_165257.1	chr2	72633952	72634152	+	1	NA	NA	NA	-69458	NR_040503	74541	Mm.410774	NR_040503	ENSMUSG00000085252	8430437L04Rik	-	RIKEN cDNA 8430437L04 gene	ncRNA	0.080000	0.577114	
mm_41693.1	chr5	100650447	100650647	+	1	NA	NA	NA	23709	NM_027978	71883	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0.010000	0.427861	
mm_27696.1	chr3	66296824	66297024	-	1	NA	NA	NA	-87	NM_145820	72789	Mm.443526	NM_028357	ENSMUSG00000027831	Veph1	2810471M23Rik|Veph	ventricular zone expressed PH domain-containing 1	protein-coding	0.015000	0.388060	
mm_5280.1	chr1	20586811	20587011	-	1	NA	NA	NA	31146	NM_153179	241035	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	0.000000	0.393035	59(TCCCTTATAAAC,-,0.00),61(CCTTATAAACAG,+,0.00)
mm_116171.1	chr13	30793941	30794141	-	1	NA	NA	NA	44808	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.025000	0.552239	
mm_99990.1	chr11	114727310	114727510	+	1	NA	NA	NA	-2	NM_001034878	432611	Mm.212764	NM_001034878	ENSMUSG00000034706	Dnaic2	C030015H18Rik|Dnai2|Gm728	dynein, axonemal, intermediate chain 2	protein-coding	0.075000	0.651741	
mm_84951.1	chr9	83146508	83146708	-	1	NA	NA	NA	-1	NM_026122	94353	Mm.244426	NM_026122	ENSMUSG00000066456	Hmgn3	1110002A15Rik|6330514M13Rik|BB071015|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding	0.090000	0.686567	
mm_121923.1	chr14	23554663	23554863	-	1	NA	NA	NA	449442	NM_001253375	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.020000	0.492537	
mm_29376.1	chr3	108722196	108722396	-	1	NA	NA	NA	3	NM_029522	76123	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0.085000	0.701493	
mm_31972.1	chr4	88179461	88179661	+	1	NA	NA	NA	57521	NR_030478	735282		NR_030478	ENSMUSG00000070077	Mir491	Mirn491|mir-491|mmu-mir-491	microRNA 491	ncRNA	0.010000	0.497512	
mm_66881.1	chr7	58740424	58740624	-	1	NA	NA	NA	82322	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.010000	0.432836	
mm_50836.1	chr6	54816671	54816871	+	1	NA	NA	NA	-145	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.165000	0.791045	
mm_137769.1	chr17	29490731	29490931	+	1	NA	NA	NA	-214	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.115000	0.761194	
mm_139416.1	chr17	53421836	53422036	+	1	NA	NA	NA	41385	NM_172497	211482	Mm.60887	NM_172497	ENSMUSG00000023931	Efhb	4921525D22Rik	EF hand domain family, member B	protein-coding	0.020000	0.492537	
mm_87625.1	chr10	57807261	57807461	+	1	NA	NA	NA	12817	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.005000	0.383085	
mm_75662.1	chr8	66486361	66486561	-	1	NA	NA	NA	46	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.085000	0.661692	
mm_103691.1	chr11	79503984	79504184	-	1	NA	NA	NA	-2	NM_019409	18377	Mm.93335	NM_019409	ENSMUSG00000049612	Omg	-	oligodendrocyte myelin glycoprotein	protein-coding	0.010000	0.432836	
mm_93917.1	chr10	127067646	127067846	-	1	NA	NA	NA	2515	NM_025982	67125	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	0.015000	0.517413	
mm_85082.1	chr9	91365254	91365454	-	1	NA	NA	NA	445	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.085000	0.631841	
mm_76578.1	chr8	89006604	89006804	-	1	NA	NA	NA	-18031	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.085000	0.681592	
mm_60626.1	chr7	44748432	44748632	+	1	NA	NA	NA	85	NM_178734	243963	Mm.382935	NM_178734	ENSMUSG00000048012	Zfp473	D030014N22Rik|Znf473|zfp-100	zinc finger protein 473	protein-coding	0.075000	0.611940	
mm_35871.1	chr4	49536538	49536738	-	1	NA	NA	NA	12908	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.005000	0.398010	
mm_160307.1	chr7	140704289	140704489	+	1	NA	NA	NA	136	NM_146962	258964	Mm.389986	NM_146962	ENSMUSG00000057997	Olfr541	MOR253-3	olfactory receptor 541	protein-coding	0.005000	0.512438	-19(GCTCTAATGGGC,+,0.00)
mm_90392.1	chr10	127322190	127322390	+	1	NA	NA	NA	326	NM_001285785	216445	Mm.227198	NM_146011	ENSMUSG00000040345	Arhgap9	AU043488	Rho GTPase activating protein 9	protein-coding	0.040000	0.587065	
mm_131000.1	chr15	103534298	103534498	-	1	NA	NA	NA	3594	NM_021391	58200	Mm.143788	NM_021391	ENSMUSG00000022490	Ppp1r1a	0610038N18Rik|I-1	protein phosphatase 1, regulatory (inhibitor) subunit 1A	protein-coding	0.025000	0.572139	
mm_73808.1	chr8	117340383	117340583	+	1	NA	NA	NA	-8687	NM_028941	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.015000	0.527363	
mm_30125.1	chr3	141931391	141931591	-	1	NA	NA	NA	97	NM_001277218	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.015000	0.557214	
mm_126223.1	chr15	78928284	78928484	+	1	NA	NA	NA	1659	NM_008495	16852	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	0.065000	0.716418	
mm_102772.1	chr11	68271150	68271350	-	1	NA	NA	NA	50358	NR_105833	102465219		NR_105833	ENSMUSG00000099174	Mir6406	Gm27981|mmu-mir-6406	microRNA 6406	ncRNA	0.020000	0.597015	
mm_16886.1	chr2	13011515	13011715	-	1	NA	NA	NA	-751	NM_153155	227580	Mm.229322	NM_153155	ENSMUSG00000049630	C1ql3	1110065A22Rik|AI661623|C1ql|C1qtnf13|CTRP13|K100	C1q-like 3	protein-coding	0.075000	0.582090	
mm_52754.1	chr6	120773485	120773685	+	1	NA	NA	NA	-183	NM_001081048	71803	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	0.015000	0.502488	
mm_76625.1	chr8	91801381	91801581	-	1	NA	NA	NA	173	NM_001253822	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.100000	0.691542	
mm_123013.1	chr14	55092291	55092491	-	1	NA	NA	NA	-343	NM_001039198	239102	Mm.441113	NM_001039198	ENSMUSG00000040721	Zfhx2	ZFH-5	zinc finger homeobox 2	protein-coding	0.045000	0.621891	
mm_72059.1	chr8	71396772	71396972	+	1	NA	NA	NA	17	NM_026636	68251	Mm.21749	NM_026636	ENSMUSG00000031820	Babam1	5430437P03Rik|Merit40	BRISC and BRCA1 A complex member 1	protein-coding	0.065000	0.611940	
mm_84683.1	chr9	72110893	72111093	-	1	NA	NA	NA	208	NM_001253862	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.080000	0.641791	
mm_14131.1	chr2	126034702	126034902	+	1	NA	NA	NA	144	NM_008008	14178	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0.010000	0.402985	
mm_93362.1	chr10	103145385	103145585	-	1	NA	NA	NA	90837	NM_001163559	74978	Mm.483817	NM_029134	ENSMUSG00000019892	Lrriq1	4930503E15Rik|Gm1557	leucine-rich repeats and IQ motif containing 1	protein-coding	0.035000	0.427861	
mm_91374.1	chr10	30200417	30200617	-	1	NA	NA	NA	23	NM_001109747	66311	Mm.251779	NM_001109747	ENSMUSG00000075266	Cenpw	2610036L11Rik|Cug2	centromere protein W	protein-coding	0.115000	0.671642	
mm_86974.1	chr10	25408271	25408471	+	1	NA	NA	NA	3	NM_013511	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.045000	0.587065	
mm_97517.1	chr11	78499737	78499937	+	1	NA	NA	NA	717	NM_011707	22370	Mm.3667	NM_011707	ENSMUSG00000017344	Vtn	AI256434|Vn	vitronectin	protein-coding	0.050000	0.557214	
mm_139005.1	chr17	45570206	45570406	+	1	NA	NA	NA	2955	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.015000	0.502488	-12(GCTCTTATAGAA,+,0.00)
mm_125536.1	chr15	58033878	58034078	+	1	NA	NA	NA	316	NM_029418	75758	Mm.455792	NM_029418	ENSMUSG00000101892	9130401M01Rik	AI849328	RIKEN cDNA 9130401M01 gene	protein-coding	0.080000	0.696517	
mm_119799.1	chr14	54208098	54208298	+	1	NA	NA	NA	45731	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.452736	
mm_138027.1	chr17	33916089	33916289	+	1	NA	NA	NA	13	NM_020625	81630	Mm.482096	NM_020625	ENSMUSG00000051390	Zbtb22	1110008J20Rik|AI265210|AI415166|Bing1|Zfp297	zinc finger and BTB domain containing 22	protein-coding	0.115000	0.751244	-53(GCGCCTTTAAGG,-,0.00),-51(GCCTTTAAGGTC,+,0.00)
mm_40628.1	chr5	64821993	64822193	+	1	NA	NA	NA	18570	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.065000	0.646766	
mm_19695.1	chr2	103605730	103605930	-	1	NA	NA	NA	39520	NM_178890	99382	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.005000	0.432836	
mm_147479.1	chr18	47247962	47248162	-	1	NA	NA	NA	120806	NM_018744	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.020000	0.502488	
mm_5875.1	chr1	53823775	53823975	-	1	NA	NA	NA	-25549	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.010000	0.472637	
mm_2428.1	chr1	95528928	95529128	+	1	NA	NA	NA	138566	NM_009183	20452	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.010000	0.407960	
mm_85399.1	chr9	103364714	103364914	-	1	NA	NA	NA	165	NM_001134427	321022	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.110000	0.726368	
mm_72706.1	chr8	84980126	84980326	+	1	NA	NA	NA	-1478	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.065000	0.711443	
mm_159006.1	chr1	161034375	161034575	-	1	NA	NA	NA	-216	NM_173424	240869	Mm.296127	NM_173424	ENSMUSG00000043467	Zbtb37	D430004I08Rik	zinc finger and BTB domain containing 37	protein-coding	0.120000	0.756219	
mm_165861.1	chr4	28812978	28813178	+	1	NA	NA	NA	-53	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.085000	0.671642	
mm_68477.1	chr7	110862852	110863052	-	1	NA	NA	NA	1	NM_053247	114332	Mm.396078	NM_053247	ENSMUSG00000030787	Lyve1	1200012G08Rik|Crsbp-1|Lyve-1|Xlkd1	lymphatic vessel endothelial hyaluronan receptor 1	protein-coding	0.015000	0.507463	
mm_65479.1	chr7	25539853	25540053	-	1	NA	NA	NA	51	NM_001113368	26367	Mm.439731	NM_007543	ENSMUSG00000054385	Ceacam2	AI267129|Bgp2|Ceacam2-L	carcinoembryonic antigen-related cell adhesion molecule 2	protein-coding	0.010000	0.522388	
mm_143160.1	chr17	57224080	57224280	-	1	NA	NA	NA	3956	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.025000	0.552239	
mm_60191.1	chr7	43408117	43408317	+	1	NA	NA	NA	-63	NM_172900	243958	Mm.24444	NM_172900	ENSMUSG00000030468	Siglecg	9830164H23|A630096C01Rik|Siglec-G|Siglec10|mSiglec-G	sialic acid binding Ig-like lectin G	protein-coding	0.005000	0.532338	
mm_160185.1	chr7	48499100	48499300	-	1	NA	NA	NA	70	NM_001034868	243978	Mm.333873	NM_001034868	ENSMUSG00000074109	Mrgprx2	G370024M05Rik|MrgB10|Mrgprb10	MAS-related GPR, member X2	protein-coding	0.005000	0.388060	
mm_24086.1	chr3	87971060	87971260	+	1	NA	NA	NA	67	NM_016701	18008	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46	nestin	protein-coding	0.070000	0.611940	-35(CCCCCTTAAAAG,-,0.00),-34(CCCCTTAAAAGC,-,0.00),-33(CCCTTAAAAGCT,+,0.00),-32(CCTTAAAAGCTC,+,0.00)
mm_98203.1	chr11	87796158	87796358	+	1	NA	NA	NA	2474	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.025000	0.552239	
mm_104575.1	chr11	96953600	96953800	-	1	NA	NA	NA	9554	NR_003293	319371	Mm.436865	NR_003293	ENSMUSG00000078700	D030028A08Rik	-	RIKEN cDNA D030028A08 gene	ncRNA	0.015000	0.447761	
mm_60938.1	chr7	46872922	46873122	+	1	NA	NA	NA	11759	NM_013580	16833	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	0.040000	0.552239	
mm_57351.1	chr6	124756766	124756966	-	1	NA	NA	NA	-379	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.110000	0.741294	
mm_49157.1	chr6	13069712	13069912	+	1	NA	NA	NA	53	NM_027992	71900	Mm.27742	NM_027992	ENSMUSG00000029571	Tmem106b	2310036D22Rik|5830455K21Rik|6430519M21Rik|AI428776|AI661344	transmembrane protein 106B	protein-coding	0.095000	0.696517	
mm_65811.1	chr7	29019906	29020106	-	1	NA	NA	NA	37152	NM_008279	26411	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.150000	0.766169	
mm_124568.1	chr14	124192394	124192594	-	1	NA	NA	NA	52	NM_010201	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.065000	0.681592	
mm_8425.1	chr1	152497551	152497751	-	1	NA	NA	NA	97784	NM_177756	269132	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0.025000	0.542289	
mm_4161.1	chr1	171029276	171029476	+	1	NA	NA	NA	10450	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.010000	0.462687	
mm_142637.1	chr17	47421779	47421979	-	1	NA	NA	NA	1	NM_001347584	75462	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.005000	0.482587	
mm_127998.1	chr15	12739788	12739988	-	1	NA	NA	NA	84769	NM_029998	77877	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	0.120000	0.711443	
mm_30010.1	chr3	135663204	135663404	-	1	NA	NA	NA	28243	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.015000	0.517413	
mm_68133.1	chr7	102210322	102210522	-	1	NA	NA	NA	87	NM_001291358	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.055000	0.656716	
mm_122216.1	chr14	32202215	32202415	-	1	NA	NA	NA	344	NM_011960	26430	Mm.15962	NM_011960	ENSMUSG00000021911	Parg	AI413217	poly (ADP-ribose) glycohydrolase	protein-coding	0.095000	0.726368	
mm_95897.1	chr11	58199641	58199841	+	1	NA	NA	NA	185	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.010000	0.592040	
mm_17265.1	chr2	26021453	26021653	-	1	NA	NA	NA	207	NM_133835	98766	Mm.247824	NM_133835	ENSMUSG00000036352	Ubac1	1110033G07Rik|AA407978|GBDR1|Gdbr1|Kpc2|Ubadc1	ubiquitin associated domain containing 1	protein-coding	0.140000	0.751244	
mm_48475.1	chr5	140995677	140995877	-	1	NA	NA	NA	4819	NM_175362	108723	Mm.46187	NM_175362	ENSMUSG00000036526	Card11	0610008L17Rik|2410011D02Rik|BIMP3|CARMA1	caspase recruitment domain family, member 11	protein-coding	0.005000	0.467662	
mm_137906.1	chr17	32007017	32007217	+	1	NA	NA	NA	27391	NM_028902	74377	Mm.75856	NM_028902	ENSMUSG00000002076	Hsf2bp	4932437G14Rik	heat shock transcription factor 2 binding protein	protein-coding	0.010000	0.582090	
mm_165478.1	chr2	164333284	164333484	+	1	NA	NA	NA	619	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.040000	0.492537	
mm_21098.1	chr2	153231619	153231819	-	1	NA	NA	NA	-6278	NM_198617	241732	Mm.277243	NM_198617	ENSMUSG00000074671	Tspyl3	AW212607|Gm36	TSPY-like 3	protein-coding	0.025000	0.587065	
mm_78246.1	chr9	21660486	21660686	+	1	NA	NA	NA	44417	NM_001174078	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.010000	0.477612	
mm_125090.1	chr15	27466720	27466920	+	1	NA	NA	NA	143	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.140000	0.761194	
mm_110695.1	chr12	69197042	69197242	-	1	NA	NA	NA	-69	NR_033222	414085	Mm.256223	NR_033222	ENSMUSG00000097061	9330151L19Rik	-	RIKEN cDNA 9330151L19 gene	ncRNA	0.135000	0.721393	
mm_24533.1	chr3	93279298	93279498	+	1	NA	NA	NA	-40351	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.015000	0.343284	
mm_55531.1	chr6	70726733	70726933	-	1	NA	NA	NA	65342	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.532338	
mm_119415.1	chr14	45219618	45219818	+	1	NA	NA	NA	1	NM_027518	70713	Mm.343793	NM_027518	ENSMUSG00000049092	Gpr137c	6330416L11Rik|Gm908|TM7SF1L2	G protein-coupled receptor 137C	protein-coding	0.095000	0.651741	
mm_82406.1	chr9	14771075	14771275	-	1	NA	NA	NA	-145	NM_029306	69325	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	0.020000	0.522388	
mm_131969.1	chr16	24733543	24733743	+	1	NA	NA	NA	11788	NM_001145954	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.005000	0.437811	
mm_104153.1	chr11	87108648	87108848	-	1	NA	NA	NA	-34	NM_175563	270906	Mm.132381	NM_175563	ENSMUSG00000020493	Prr11	B930067F20Rik	proline rich 11	protein-coding	0.055000	0.482587	
mm_161422.1	chr15	37960948	37961148	-	1	NA	NA	NA	7	NM_199476	382985	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.090000	0.681592	
mm_37197.1	chr4	117682156	117682356	-	1	NA	NA	NA	-31	NM_023178	66233	Mm.29142	NM_023178	ENSMUSG00000009640	Dmap1	1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425	DNA methyltransferase 1-associated protein 1	protein-coding	0.055000	0.592040	
mm_134738.1	chr16	23028919	23029119	-	1	NA	NA	NA	82	NM_201375	385643	Mm.440414	NM_201375	ENSMUSG00000060459	Kng2	-	kininogen 2	protein-coding	0.005000	0.522388	
mm_17954.1	chr2	37359116	37359316	-	1	NA	NA	NA	116	NM_026176	67466	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	0.095000	0.597015	
mm_147787.1	chr18	61635293	61635493	-	1	NA	NA	NA	-4260	NR_045420	545261	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0.035000	0.522388	
mm_94316.1	chr11	4236322	4236522	+	1	NA	NA	NA	-363	NM_001013365	18413	Mm.131422	NM_001013365	ENSMUSG00000058755	Osm	OncoM	oncostatin M	protein-coding	0.025000	0.582090	
mm_28462.1	chr3	90695029	90695229	-	1	NA	NA	NA	592	NM_001281852	20202	Mm.2128	NM_009114	ENSMUSG00000056071	S100a9	60B8Ag|AW546964|BEE22|Cagb|GAGB|L1Ag|MRP14|p14	S100 calcium binding protein A9 (calgranulin B)	protein-coding	0.005000	0.497512	
mm_157239.1	chrX	17572095	17572295	-	1	NA	NA	NA	130	NM_001313745	72018	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	0.045000	0.616915	-46(TCCTTTAAAGTG,+,0.00),-45(CCTTTAAAGTGG,+,0.00)
mm_27166.1	chr3	33143184	33143384	-	1	NA	NA	NA	-93	NM_001163516	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.190000	0.825871	
mm_125438.1	chr15	44619133	44619333	+	1	NA	NA	NA	-408	NM_019480	55960	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0.170000	0.766169	
mm_65136.1	chr7	19562125	19562325	-	1	NA	NA	NA	173	NM_199149	232947	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	0.155000	0.661692	
mm_120180.1	chr14	61305311	61305511	+	1	NA	NA	NA	-77	NR_033788	67355	Mm.193728	NR_033788	ENSMUSG00000101505	1700109G14Rik	1700126G13Rik	RIKEN cDNA 1700109G14 gene	ncRNA	0.000000	0.452736	
mm_98620.1	chr11	95843771	95843971	+	1	NA	NA	NA	626	NM_001284397	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.010000	0.507463	
mm_44772.1	chr5	31967886	31968086	-	1	NA	NA	NA	-168486	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.015000	0.477612	72(ATTTTTAAAGGC,+,0.00)
mm_47025.1	chr5	115520544	115520744	-	1	NA	NA	NA	13968	NM_133915	19303	Mm.18714	NM_011223	ENSMUSG00000029528	Pxn	AW108311|AW123232|Pax	paxillin	protein-coding	0.045000	0.572139	
mm_160162.1	chr7	44442176	44442376	+	1	NA	NA	NA	-211	NM_198250	272381	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	0.025000	0.636816	
mm_121369.1	chr14	117679871	117680071	+	1	NA	NA	NA	273876	NR_105747	102465148		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0.000000	0.283582	
mm_43473.1	chr5	136694134	136694334	+	1	NA	NA	NA	57	NM_001085387	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.015000	0.567164	
mm_139466.1	chr17	55959064	55959264	+	1	NA	NA	NA	-23	NM_028381	72886	Mm.22796	NM_028381	ENSMUSG00000003208	Ccdc94	2900016D05Rik|AI413813	coiled-coil domain containing 94	protein-coding	0.090000	0.542289	
mm_73234.1	chr8	104131018	104131218	+	1	NA	NA	NA	-25245	NR_131138	546096	Mm.252264	NR_131138	ENSMUSG00000110053	Gm29682	-	predicted gene, 29682	ncRNA	0.035000	0.537313	
mm_97874.1	chr11	83185293	83185493	+	1	NA	NA	NA	-5937	NM_011409	20557	Mm.290922	NM_011409	ENSMUSG00000018986	Slfn3	-	schlafen 3	protein-coding	0.025000	0.487562	
mm_48594.1	chr5	143992540	143992740	-	1	NA	NA	NA	22213	NM_177682	231874	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0.030000	0.532338	
mm_14712.1	chr2	143546125	143546325	+	1	NA	NA	NA	92	NM_008792	18549	Mm.294493	NM_008792	ENSMUSG00000027419	Pcsk2	6330411F23Rik|AI839700|Nec-2|Nec2|PC2|Phpp-2|SPC2	proprotein convertase subtilisin/kexin type 2	protein-coding	0.045000	0.582090	
mm_165197.1	chr2	32493304	32493504	-	1	NA	NA	NA	-41934	NM_146118	227731	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.015000	0.547264	
mm_87973.1	chr10	63480201	63480401	+	1	NA	NA	NA	22790	NM_001164376	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.015000	0.527363	-94(TGCTTTAAGAGC,-,0.00),-93(GCTTTAAGAGCA,+,0.00)
mm_150481.1	chr19	38930919	38931119	+	1	NA	NA	NA	29	NM_008234	15201	Mm.57223	NM_008234	ENSMUSG00000025001	Hells	AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8	helicase, lymphoid specific	protein-coding	0.150000	0.726368	
mm_12697.1	chr2	76498961	76499161	+	1	NA	NA	NA	55	NM_001290735	99031	Mm.240435	NM_145525	ENSMUSG00000042359	Osbpl6	1110062M20Rik|AI596402|ORP-6|mKIAA4128	oxysterol binding protein-like 6	protein-coding	0.030000	0.527363	
mm_166841.1	chr7	19319616	19319816	-	1	NA	NA	NA	-9671	NM_001347586	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.020000	0.572139	
mm_139629.1	chr17	57367259	57367459	+	1	NA	NA	NA	8673	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.005000	0.373134	22(CTCTTTTAAAAG,-,0.00),24(CTTTTAAAAGTA,+,0.00)
mm_86026.1	chr9	112235871	112236071	-	1	NA	NA	NA	-1130	NM_001177619	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.015000	0.482587	
mm_172738.1	chr8	78516749	78516949	+	1	NA	NA	NA	7521	NM_001282108	76775	Mm.334631	NM_029736	ENSMUSG00000031684	Slc10a7	2410193C02Rik|P7	solute carrier family 10 (sodium/bile acid cotransporter family), member 7	protein-coding	0.005000	0.482587	
mm_157655.1	chrX	57338406	57338606	-	1	NA	NA	NA	223	NM_152801	73341	Mm.261443	NM_152801	ENSMUSG00000031133	Arhgef6	1600028C08Rik|1700038J06Rik|4930592P22Rik|alpha-PIX	Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6	protein-coding	0.030000	0.492537	-93(GCTCATAAAAGG,-,0.00)
mm_162830.1	chr10	81559517	81559717	+	1	NA	NA	NA	173	NM_001276288	14797	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.145000	0.776119	
mm_143921.1	chr17	85618317	85618517	-	1	NA	NA	NA	-21	NR_038082	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.055000	0.656716	
mm_127141.1	chr15	98265492	98265692	+	1	NA	NA	NA	-8285	NM_027304	70069	Mm.107718	NM_027304	ENSMUSG00000048077	H1fnt	1700026P10Rik|H1.7|H1t2|Hanp1|mH1t2	H1 histone family, member N, testis-specific	protein-coding	0.010000	0.477612	
mm_93739.1	chr10	120142337	120142537	-	1	NA	NA	NA	-29472	NM_080446	117599	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.015000	0.427861	
mm_98031.1	chr11	85311207	85311407	+	1	NA	NA	NA	53	NM_016910	53892	Mm.45609	NM_016910	ENSMUSG00000020525	Ppm1d	AV338790|Wip1	protein phosphatase 1D magnesium-dependent, delta isoform	protein-coding	0.145000	0.701493	
mm_99703.1	chr11	106160143	106160343	+	1	NA	NA	NA	-101	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.145000	0.786070	
mm_170996.1	chr2	75659205	75659405	+	1	NA	NA	NA	15	NR_033513	627828	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	0.115000	0.686567	
mm_131434.1	chr16	15887688	15887888	+	1	NA	NA	NA	502	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.135000	0.751244	
mm_44401.1	chr5	17835952	17836152	-	1	NA	NA	NA	-156	NM_007643	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.015000	0.447761	
mm_39960.1	chr5	32136494	32136694	+	1	NA	NA	NA	122	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.115000	0.696517	
mm_167608.1	chr9	54772837	54773037	+	1	NA	NA	NA	8189	NM_013496	12903	Mm.34797	NM_013496	ENSMUSG00000032291	Crabp1	AI326249|CRABP-I|Crabp-1|CrabpI|Rbp-5	cellular retinoic acid binding protein I	protein-coding	0.025000	0.532338	
mm_51626.1	chr6	85451916	85452116	+	1	NA	NA	NA	-46	NR_028081	73327	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	0.090000	0.651741	
mm_170486.1	chr19	16164749	16164949	-	1	NA	NA	NA	751	NR_033228	595139	Mm.405662	NR_033228		E030024N20Rik	9030417F11Rik|Ppia-ps8	peptidylprolyl isomerase A pseudogene 8	pseudo	0.060000	0.517413	-19(CATTATAAAAAG,-,0.00)
mm_110590.1	chr12	56532806	56533006	-	1	NA	NA	NA	-3486	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.035000	0.432836	
mm_5294.1	chr1	21079103	21079303	-	1	NA	NA	NA	22	NM_177409	170829	Mm.185680	NM_177409	ENSMUSG00000041779	Tram2	C330003D03Rik	translocating chain-associating membrane protein 2	protein-coding	0.130000	0.781095	
mm_96610.1	chr11	69097138	69097338	+	1	NA	NA	NA	-1718	NM_011065	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.035000	0.641791	
mm_51234.1	chr6	71493784	71493984	+	1	NA	NA	NA	7	NM_001308303	22644	Mm.422969	NM_009543	ENSMUSG00000052656	Rnf103	AW146237|AW212918|Zfp103|kf-1	ring finger protein 103	protein-coding	0.125000	0.741294	
mm_127976.1	chr15	12397379	12397579	-	1	NA	NA	NA	75983	NM_025673	66629	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.005000	0.338308	
mm_76325.1	chr8	84705096	84705296	-	1	NA	NA	NA	3739	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.060000	0.666667	
mm_24949.1	chr3	96629837	96630037	+	1	NA	NA	NA	9	NM_001102407	60365	Mm.261972	NM_025875	ENSMUSG00000038374	Rbm8a	2310057C03Rik|AA673428|Rbm8	RNA binding motif protein 8a	protein-coding	0.085000	0.577114	
mm_49733.1	chr6	34745538	34745738	+	1	NA	NA	NA	-34794	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.035000	0.522388	
mm_135984.1	chr16	75092601	75092801	-	1	NA	NA	NA	493360	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.020000	0.412935	67(GCTCTTAAAGTG,+,0.00)
mm_137529.1	chr17	27554503	27554703	+	1	NA	NA	NA	-1971	NM_001166536	15361	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0.035000	0.532338	
mm_80005.1	chr9	67757417	67757617	+	1	NA	NA	NA	-1920	NM_001081314	75697	Mm.105353	NM_001081314	ENSMUSG00000091956	C2cd4b	3300001A09Rik|Fam148b	C2 calcium-dependent domain containing 4B	protein-coding	0.005000	0.437811	
mm_59524.1	chr7	27607986	27608186	+	1	NA	NA	NA	750	NM_001331109	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.025000	0.537313	
mm_51401.1	chr6	78372062	78372262	+	1	NA	NA	NA	1277	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.015000	0.482587	
mm_44087.1	chr5	149184611	149184811	+	1	NA	NA	NA	151	NM_001115149	231915	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	0.075000	0.606965	
mm_172982.1	chr9	97228860	97229060	-	1	NA	NA	NA	-117919	NM_138756	192287	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.015000	0.393035	
mm_134043.1	chr16	5195842	5196042	-	1	NA	NA	NA	8070	NM_013796	27426	Mm.215641	NM_013796	ENSMUSG00000023143	Nagpa	AI596180|UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	protein-coding	0.035000	0.572139	
mm_77159.1	chr8	111687064	111687264	-	1	NA	NA	NA	2510	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.035000	0.611940	
mm_108775.1	chr12	89812714	89812914	+	1	NA	NA	NA	331	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.040000	0.512438	
mm_3993.1	chr1	164453408	164453608	+	1	NA	NA	NA	4847	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.025000	0.497512	
mm_40626.1	chr5	64820857	64821057	+	1	NA	NA	NA	17434	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.005000	0.383085	
mm_154596.1	chrX	7593059	7593259	+	1	NA	NA	NA	12261	NM_138603	54638	Mm.288192	NM_138603	ENSMUSG00000031143	Ccdc22	AI481216|DXImx40e|Ppp1r3f|Sfc22	coiled-coil domain containing 22	protein-coding	0.020000	0.582090	
mm_56473.1	chr6	99028799	99028999	-	1	NA	NA	NA	-601	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.060000	0.592040	
mm_77377.1	chr8	119836593	119836793	-	1	NA	NA	NA	3886	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.015000	0.547264	
mm_160170.1	chr7	45052954	45053154	-	1	NA	NA	NA	-173	NM_175022	233210	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	0.065000	0.691542	
mm_37910.1	chr4	132757075	132757275	-	1	NA	NA	NA	-4	NM_133888	100340	Mm.287187	NM_133888	ENSMUSG00000028885	Smpdl3b	1110054A24Rik|AU045240|Asml3b	sphingomyelin phosphodiesterase, acid-like 3B	protein-coding	0.055000	0.592040	
mm_171663.1	chr4	44710763	44710963	-	1	NA	NA	NA	-423	NM_008782	18507	Mm.439659	NM_008782	ENSMUSG00000014030	Pax5	BSAP|EBB-1|KLP|Pax-5	paired box 5	protein-coding	0.075000	0.651741	
mm_8055.1	chr1	135374841	135375041	-	1	NA	NA	NA	122	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.115000	0.736318	
mm_143167.1	chr17	57225965	57226165	-	1	NA	NA	NA	2071	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.015000	0.547264	
mm_165119.1	chr2	3411894	3412094	-	1	NA	NA	NA	10654	NM_008579	104362	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	0.010000	0.353234	
mm_165865.1	chr4	34209065	34209265	-	1	NA	NA	NA	-159098	NM_026293	67652	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.015000	0.358209	-42(GCCTCTAAAAAG,-,0.00)
mm_19915.1	chr2	115344192	115344392	-	1	NA	NA	NA	-12	NR_040516	78193	Mm.189508	NR_040516	ENSMUSG00000087309	4930528P14Rik	-	RIKEN cDNA 4930528P14 gene	ncRNA	0.010000	0.467662	
mm_136223.1	chr16	90143688	90143888	-	1	NA	NA	NA	1551	NR_033476	100038709	Mm.484070	NR_033476		Gm10789	ENSMUSG00000074924	predicted gene 10789	ncRNA	0.100000	0.721393	
mm_111149.1	chr12	82245303	82245503	-	1	NA	NA	NA	-65946	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.030000	0.442786	
mm_158281.1	chrX	111536233	111536433	-	1	NA	NA	NA	1626	NM_025949	67071	Mm.37617	NM_025949	ENSMUSG00000025665	Rps6ka6	2610524K04Rik|RSK4|S6K-alpha-6	ribosomal protein S6 kinase polypeptide 6	protein-coding	0.025000	0.492537	
mm_134707.1	chr16	22892041	22892241	-	1	NA	NA	NA	126	NM_001276449	11625	Mm.197554	NM_013465	ENSMUSG00000022868	Ahsg	-	alpha-2-HS-glycoprotein	protein-coding	0.010000	0.517413	
mm_112919.1	chr13	20923795	20923995	+	1	NA	NA	NA	129782	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.333333	
mm_91511.1	chr10	37137224	37137424	-	1	NA	NA	NA	1602	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.080000	0.671642	
mm_77227.1	chr8	115703705	115703905	-	1	NA	NA	NA	3089	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.005000	0.308458	
mm_152985.1	chr19	29523071	29523271	-	1	NA	NA	NA	889	NM_001081319	226089	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0.065000	0.681592	-75(AACCTTTAAAGC,-,0.00),-73(CCTTTAAAGCAG,+,0.00)
mm_171036.1	chr2	91584886	91585086	-	1	NA	NA	NA	-11095	NR_028553	100217458		NR_028553	ENSMUSG00000077221	Snord67	MBII-166	small nucleolar RNA, C/D box 67	snoRNA	0.010000	0.368159	
mm_140353.1	chr17	86831248	86831448	+	1	NA	NA	NA	77484	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.005000	0.353234	
mm_45568.1	chr5	73256496	73256696	-	1	NA	NA	NA	22	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.080000	0.601990	
mm_65991.1	chr7	30534961	30535161	-	1	NA	NA	NA	-1	NM_001289682	233071	Mm.190704	NM_178252	ENSMUSG00000036882	Arhgap33	AW324378|NOMA-GAP|Snx26|TCGAP	Rho GTPase activating protein 33	protein-coding	0.120000	0.731343	
mm_139395.1	chr17	52304385	52304585	+	1	NA	NA	NA	-298224	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.010000	0.512438	
mm_134910.1	chr16	30267413	30267613	-	1	NA	NA	NA	19	NM_027904	71756	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.025000	0.582090	
mm_111713.1	chr12	103701081	103701281	-	1	NA	NA	NA	-5652	NM_026687	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding	0.020000	0.507463	
mm_74700.1	chr8	16421773	16421973	-	1	NA	NA	NA	-253035	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0.000000	0.353234	
mm_55678.1	chr6	72610153	72610353	-	1	NA	NA	NA	6495	NM_009444	22135	Mm.246563	NM_009444		Tgoln2	TGN38B|TGN41|TGN46|Ttgn2	trans-golgi network protein 2	protein-coding	0.010000	0.338308	
mm_91306.1	chr10	24917901	24918101	-	1	NA	NA	NA	7337	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.010000	0.522388	
mm_99538.1	chr11	103193528	103193728	+	1	NA	NA	NA	14920	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.055000	0.711443	
mm_135575.1	chr16	50420028	50420228	-	1	NA	NA	NA	12261	NM_027444	70508	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.000000	0.402985	
mm_90049.1	chr10	116018349	116018549	+	1	NA	NA	NA	86	NM_011217	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	0.045000	0.641791	
mm_11406.1	chr2	31510984	31511184	+	1	NA	NA	NA	40776	NR_002687	432466	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.000000	0.477612	74(GTCTTTAAAAAA,-,0.00)
mm_143243.1	chr17	64269604	64269804	-	1	NA	NA	NA	62179	NM_144859	224938	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja 2, RING-H2 motif containing	protein-coding	0.005000	0.477612	
mm_67543.1	chr7	81493575	81493775	-	1	NA	NA	NA	250	NM_021492	11775	Mm.322894	NM_021492	ENSMUSG00000062444	Ap3b2	AI549966|AU042881|Naptb|[b]-NAP|beta-NAP|beta3B	adaptor-related protein complex 3, beta 2 subunit	protein-coding	0.095000	0.651741	-92(CCTTTAAGAACC,+,0.00)
mm_20903.1	chr2	150136391	150136591	-	1	NA	NA	NA	187	NM_023266	104348	Mm.485851	NM_023266	ENSMUSG00000068134	Zfp120	AI315103|E030042N05Rik|F80|MZF31|Zfp844	zinc finger protein 120	protein-coding	0.025000	0.597015	
mm_5464.1	chr1	36445156	36445356	-	1	NA	NA	NA	15	NM_001310517	214895	Mm.287854	NM_001013374	ENSMUSG00000001143	Lman2l	A630028F14Rik|VIP36-like|VIPL	lectin, mannose-binding 2-like	protein-coding	0.095000	0.686567	
mm_42481.1	chr5	115470720	115470920	+	1	NA	NA	NA	4554	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.040000	0.577114	
mm_170141.1	chr17	40127014	40127214	-	1	NA	NA	NA	81495	NM_031190	18663	Mm.717	NM_031190	ENSMUSG00000031233	Pgk2	Pgk-2|Tcp-2	phosphoglycerate kinase 2	protein-coding	0.035000	0.472637	-80(TCTTTTATAGAC,+,0.00)
mm_32203.1	chr4	101507386	101507586	+	1	NA	NA	NA	-490	NM_001164585	72685	Mm.76494	NM_198412	ENSMUSG00000028528	Dnajc6	2810027M23Rik|mKIAA0473	DnaJ heat shock protein family (Hsp40) member C6	protein-coding	0.010000	0.457711	
mm_3116.1	chr1	134613241	134613441	+	1	NA	NA	NA	-33340	NM_009307	20980	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194	synaptotagmin II	protein-coding	0.010000	0.402985	
mm_149587.1	chr19	16132685	16132885	+	1	NA	NA	NA	-46	NM_008139	14682	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.135000	0.751244	
mm_27473.1	chr3	53017121	53017321	-	1	NA	NA	NA	2	NM_026225	67542	Mm.249548	NM_026225	ENSMUSG00000027742	Cog6	4933405E16Rik|AU018618|mKIAA1134	component of oligomeric golgi complex 6	protein-coding	0.115000	0.661692	
mm_69026.1	chr7	126792412	126792612	-	1	NA	NA	NA	-41	NM_019674	56420	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|Ppx	protein phosphatase 4, catalytic subunit	protein-coding	0.120000	0.656716	
mm_156327.1	chrX	138914330	138914530	+	1	NA	NA	NA	0	NM_013724	27206	Mm.482319	NM_013724	ENSMUSG00000052854	Nrk	AA407323|AA409510|AI225895|AV168563|AW538185|Nesk	Nik related kinase	protein-coding	0.095000	0.661692	
mm_153557.1	chr19	42135890	42136090	-	1	NA	NA	NA	-6997	NM_027106	69534	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0.010000	0.467662	
mm_66171.1	chr7	33944297	33944497	-	1	NA	NA	NA	588	NM_178308	110187	Mm.155750	NM_178308	ENSMUSG00000066586	Scgb2b26	Abpbg26|Abpbg4|Abpg|C2d|Scgb2b4	secretoglobin, family 2B, member 26	protein-coding	0.015000	0.427861	
mm_41360.1	chr5	90506502	90506702	+	1	NA	NA	NA	-12347	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.010000	0.442786	
mm_30126.1	chr3	141931460	141931660	-	1	NA	NA	NA	28	NM_001277218	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.015000	0.567164	
mm_151121.1	chr19	47865446	47865646	+	1	NA	NA	NA	1	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.070000	0.641791	
mm_61965.1	chr7	90426398	90426598	+	1	NA	NA	NA	186	NM_027298	70054	Mm.307198	NM_027298	ENSMUSG00000044362	Ccdc89	1700019B01Rik|AU022100|BOIP	coiled-coil domain containing 89	protein-coding	0.045000	0.552239	
mm_48164.1	chr5	137152782	137152982	-	1	NA	NA	NA	-36675	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.472637	
mm_124987.1	chr15	21367366	21367566	+	1	NA	NA	NA	256014	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.005000	0.378109	
mm_6125.1	chr1	64305361	64305561	-	1	NA	NA	NA	-184072	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.010000	0.577114	
mm_46793.1	chr5	112771110	112771310	-	1	NA	NA	NA	-22082	NR_040675	67360	Mm.59218	NR_040675	ENSMUSG00000098230	1700095B10Rik	-	RIKEN cDNA 1700095B10 gene	ncRNA	0.005000	0.641791	
mm_135420.1	chr16	45173828	45174028	-	1	NA	NA	NA	15099	NM_026402	67841	Mm.41775	NM_026402	ENSMUSG00000022663	Atg3	2610016C12Rik|APG3|Apg3l|Atg3l|PC3-96	autophagy related 3	protein-coding	0.000000	0.457711	
mm_130164.1	chr15	91642986	91643186	-	1	NA	NA	NA	-30138	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.025000	0.432836	
mm_22317.1	chr2	180443810	180444010	-	1	NA	NA	NA	-17068	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.010000	0.442786	-25(TCCCTTATAAAC,-,0.00),-23(CCTTATAAACTT,+,0.00)
mm_77546.1	chr8	123212685	123212885	-	1	NA	NA	NA	3	NM_145606	234852	Mm.41596	NM_145606	ENSMUSG00000000743	Chmp1a	2900018H07Rik|Pcoln3	charged multivesicular body protein 1A	protein-coding	0.150000	0.746269	
mm_29249.1	chr3	107218595	107218795	-	1	NA	NA	NA	3037	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.030000	0.532338	
mm_70008.1	chr7	142399288	142399488	-	1	NA	NA	NA	-11518	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.000000	0.517413	
mm_64164.1	chr7	141393085	141393285	+	1	NA	NA	NA	1025	NM_011528	21351	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0.020000	0.457711	-33(AGCTATAAAGGA,-,0.00)
mm_66222.1	chr7	34748192	34748392	-	1	NA	NA	NA	64419	NM_175140	68947	Mm.29380	NM_175140	ENSMUSG00000060402	Chst8	1500011J21Rik|AI426009	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 8	protein-coding	0.030000	0.517413	
mm_102903.1	chr11	69546406	69546606	-	1	NA	NA	NA	2602	NM_001081330	327954	Mm.247478	NM_177617	ENSMUSG00000005237	Dnah2	2900022L05Rik|4930564A01|D130094J20|D330014H01Rik|Dnahc2|Dnhd3	dynein, axonemal, heavy chain 2	protein-coding	0.075000	0.651741	
mm_25638.1	chr3	121021376	121021576	+	1	NA	NA	NA	-134744	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA	0.010000	0.482587	
mm_123595.1	chr14	67715284	67715484	-	1	NA	NA	NA	226	NM_001110162	108912	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	0.105000	0.696517	
mm_79161.1	chr9	47813737	47813937	+	1	NA	NA	NA	4371	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.025000	0.462687	
mm_57365.1	chr6	124769392	124769592	-	1	NA	NA	NA	181	NM_001302642	13807	Mm.3913	NM_013509	ENSMUSG00000004267	Eno2	AI837106|D6Ertd375e|Eno-2|NSE	enolase 2, gamma neuronal	protein-coding	0.120000	0.741294	-95(GGCTCTATAGGC,-,0.00)
mm_136683.1	chr17	6746189	6746389	+	1	NA	NA	NA	36491	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.035000	0.547264	
mm_151007.1	chr19	46669173	46669373	+	1	NA	NA	NA	3727	NM_007809	13074	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.005000	0.472637	
mm_141598.1	chr17	32523951	32524151	-	1	NA	NA	NA	-12578	NM_024442	70101	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0.030000	0.542289	
mm_46174.1	chr5	96921132	96921332	-	1	NA	NA	NA	-40	NR_131152	666266	Mm.32442	NR_131152	ENSMUSG00000106357	Gm8013	EG666266	predicted gene 8013	ncRNA	0.025000	0.507463	
mm_106623.1	chr11	120824450	120824650	-	1	NA	NA	NA	-3	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.125000	0.681592	
mm_12604.1	chr2	74680546	74680746	+	1	NA	NA	NA	1088	NR_073086	15431	Mm.207763	NM_008273	ENSMUSG00000042499	Hoxd11	E230017H14Rik|Hox-4.6|Hox-5.4|Hox-5.5	homeobox D11	protein-coding	0.055000	0.572139	
mm_79597.1	chr9	58487997	58488197	+	1	NA	NA	NA	-506	NM_176921	319477	Mm.153674	NM_176921	ENSMUSG00000066607	6030419C18Rik	-	RIKEN cDNA 6030419C18 gene	protein-coding	0.160000	0.786070	-39(CGCTTTAAAAGC,-,0.00),-38(GCTTTAAAAGCT,+,0.00)
mm_116509.1	chr13	45556218	45556418	-	1	NA	NA	NA	48874	NM_025508	66355	Mm.290802	NM_025508	ENSMUSG00000000253	Gmpr	2310004P21Rik|AV028449|GMPR 1	guanosine monophosphate reductase	protein-coding	0.010000	0.407960	
mm_4357.1	chr1	171917588	171917788	+	1	NA	NA	NA	151	NM_030710	30925	Mm.486404	NM_030710	ENSMUSG00000015314	Slamf6	KAL1|KAL1b|Ly108|NTB-A|NTBA|SF2000	SLAM family member 6	protein-coding	0.025000	0.477612	
mm_104464.1	chr11	95080833	95081033	-	1	NA	NA	NA	-4122	NM_001306162	16400	Mm.57035	NM_013565	ENSMUSG00000001507	Itga3	AA407068|CD49C|GAPB3	integrin alpha 3	protein-coding	0.020000	0.527363	
mm_7863.1	chr1	132566910	132567110	-	1	NA	NA	NA	-24070	NM_177129	21367	Mm.260861	NM_011531	ENSMUSG00000053024	Cntn2	D130012K04Rik|TAG-1|Tax	contactin 2	protein-coding	0.005000	0.487562	
mm_33414.1	chr4	129928669	129928869	+	1	NA	NA	NA	22543	NR_045190	319894	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	0.030000	0.597015	
mm_132223.1	chr16	32643782	32643982	+	1	NA	NA	NA	-761	NM_001110147	51789	Mm.251115	NM_016788	ENSMUSG00000022791	Tnk2	Ack|Ack-1|Ack1|Cdgip|Pyk1	tyrosine kinase, non-receptor, 2	protein-coding	0.140000	0.776119	-80(GGCCCTTTAAGA,-,0.00),-78(CCCTTTAAGAAG,-,0.00),-77(CCTTTAAGAAGG,+,0.00)
mm_50856.1	chr6	55203320	55203520	+	1	NA	NA	NA	37	NM_001142781	330323	Mm.268997	NM_177883	ENSMUSG00000038022	Fam188b	C330043M08Rik|Gm1406	family with sequence similarity 188, member B	protein-coding	0.075000	0.656716	
mm_21963.1	chr2	167240499	167240699	-	1	NA	NA	NA	-62	NM_008968	19223	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.045000	0.666667	
mm_45374.1	chr5	66050263	66050463	-	1	NA	NA	NA	-46078	NR_027961	231253	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.030000	0.492537	
mm_39139.1	chr4	155223112	155223312	-	1	NA	NA	NA	-677	NM_011385	20481	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.145000	0.756219	
mm_835.1	chr1	51478571	51478771	+	1	NA	NA	NA	-272	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.055000	0.572139	
mm_164934.1	chr18	83559637	83559837	+	1	NA	NA	NA	-233853	NR_045361	70960	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0.000000	0.492537	
mm_45205.1	chr5	52669638	52669838	-	1	NA	NA	NA	-37	NM_172490	211006	Mm.244719	NM_172490	ENSMUSG00000029173	Sepsecs	AA986712|D5Ertd135e|SLA|SecS	Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase	protein-coding	0.125000	0.686567	
mm_170364.1	chr1	85272255	85272455	+	1	NA	NA	NA	-1789	NM_001037909	620078	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik|OTTMUSG00000029174	RIKEN cDNA C130026I21 gene	protein-coding	0.020000	0.552239	
mm_109739.1	chr12	117220268	117220468	+	1	NA	NA	NA	-30449	NR_029563	387171		NR_029563	ENSMUSG00000065538	Mir153	Mirn153|mir-153|mmu-mir-153	microRNA 153	ncRNA	0.010000	0.417910	
mm_162383.1	chr1	74178543	74178743	-	1	NA	NA	NA	15988	NM_178241	227288	Mm.337035	NM_178241	ENSMUSG00000048480	Cxcr1	Il8ra	chemokine (C-X-C motif) receptor 1	protein-coding	0.005000	0.378109	
mm_44760.1	chr5	31571317	31571517	-	1	NA	NA	NA	-20	NR_102275	100740	Mm.23370	NR_102275		AI839979	-	expressed sequence AI839979	ncRNA	0.035000	0.572139	
mm_90075.1	chr10	116417976	116418176	+	1	NA	NA	NA	-45	NR_028107	67342	Mm.245800	NM_026098	ENSMUSG00000020164	Kcnmb4os1	1700058G18Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1	ncRNA	0.030000	0.577114	
mm_53299.1	chr6	129045821	129046021	+	1	NA	NA	NA	20	NR_024263	232408	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.005000	0.457711	
mm_23472.1	chr3	60480490	60480690	+	1	NA	NA	NA	7760	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.010000	0.452736	
mm_146517.1	chr18	4239116	4239316	-	1	NA	NA	NA	73384	NM_026092	67328	Mm.158148	NM_026092	ENSMUSG00000024233	Lyzl1	1700038F02Rik|Lyc2|Lyzd1	lysozyme-like 1	protein-coding	0.010000	0.537313	
mm_82278.1	chr9	7358172	7358372	-	1	NA	NA	NA	10898	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.368159	
mm_44253.1	chr5	5380545	5380745	-	1	NA	NA	NA	-394	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.205000	0.855721	
mm_71104.1	chr8	35495196	35495396	+	1	NA	NA	NA	237	NM_026067	67276	Mm.207534	NM_026067	ENSMUSG00000031527	Eri1	3'hexo|3110010F15Rik|Thex1|eri-1	exoribonuclease 1	protein-coding	0.180000	0.776119	
mm_24856.1	chr3	95882473	95882673	+	1	NA	NA	NA	-345	NM_001033302	229599	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	0.085000	0.621891	-32(CCTTAAATAGGA,+,0.00)
mm_16915.1	chr2	13544562	13544762	-	1	NA	NA	NA	2	NM_010067	13434	Mm.6979	NM_010067	ENSMUSG00000026723	Trdmt1	Dnmt2|Rnmt2	tRNA aspartic acid methyltransferase 1	protein-coding	0.085000	0.626866	
mm_155309.1	chrX	61288094	61288294	+	1	NA	NA	NA	96901	NR_033502	320247	Mm.447372	NR_033502		C030023E24Rik	-	RIKEN cDNA C030023E24 gene	ncRNA	0.015000	0.507463	
mm_20143.1	chr2	121456651	121456851	-	1	NA	NA	NA	13	NM_001025371	574418	Mm.459165	NM_001025371	ENSMUSG00000046110	Serinc4	-	serine incorporator 4	protein-coding	0.025000	0.422886	
mm_131475.1	chr16	17070201	17070401	+	1	NA	NA	NA	162	NM_001291047	106369	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee-like 1 (Drosophila)	protein-coding	0.155000	0.761194	
mm_23434.1	chr3	59131766	59131966	+	1	NA	NA	NA	-538	NM_001287123	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.005000	0.368159	
mm_167449.1	chr8	122567880	122568080	+	1	NA	NA	NA	-35	NM_026014	67177	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0.120000	0.661692	
mm_80924.1	chr9	101989097	101989297	+	1	NA	NA	NA	315778	NR_106163	102466241		NR_106163	ENSMUSG00000098521	Mir7243	Gm27363|mmu-mir-7243	microRNA 7243	ncRNA	0.005000	0.462687	
mm_135900.1	chr16	66865331	66865531	-	1	NA	NA	NA	208313	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0.005000	0.497512	
mm_100250.1	chr11	117326292	117326492	+	1	NA	NA	NA	-5323	NM_017380	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.020000	0.582090	
mm_70609.1	chr8	13405019	13405219	+	1	NA	NA	NA	38	NM_011881	24013	Mm.257501	NM_011881	ENSMUSG00000031450	Grk1	Gprk1|Rhok|Rk	G protein-coupled receptor kinase 1	protein-coding	0.040000	0.552239	
mm_20276.1	chr2	126876092	126876292	-	1	NA	NA	NA	69	NM_001164325	58800	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	0.130000	0.686567	
mm_141813.1	chr17	34603644	34603844	-	1	NA	NA	NA	-183	NM_019403	54197	Mm.274542	NM_019403	ENSMUSG00000015478	Rnf5	2410131O05Rik|AA407576|NG2	ring finger protein 5	protein-coding	0.030000	0.492537	
mm_1624.1	chr1	74396465	74396665	+	1	NA	NA	NA	2255	NR_029743	387219		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.005000	0.497512	
mm_170902.1	chr2	30069481	30069681	+	1	NA	NA	NA	3107	NM_001204875	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.015000	0.383085	
mm_36279.1	chr4	63745013	63745213	-	1	NA	NA	NA	0	NM_177371	326623	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0.015000	0.562189	
mm_168740.1	chr12	115208445	115208645	-	1	NA	NA	NA	487249	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.000000	0.447761	
mm_138722.1	chr17	36870022	36870222	+	1	NA	NA	NA	548	NM_011280	19824	Mm.299155	NM_011280	ENSMUSG00000073400	Trim10	AI324236|BB139825|Herf1|Rnf9	tripartite motif-containing 10	protein-coding	0.055000	0.616915	
mm_75692.1	chr8	68211912	68212112	-	1	NA	NA	NA	-64516	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.005000	0.398010	
mm_140756.1	chr17	17521547	17521747	-	1	NA	NA	NA	102842	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.005000	0.353234	
mm_98559.1	chr11	95310221	95310421	+	1	NA	NA	NA	-75	NM_001195003	217127	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	0.045000	0.532338	
mm_153686.1	chr19	44396677	44396877	-	1	NA	NA	NA	10932	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.020000	0.497512	
mm_13757.1	chr2	118126699	118126899	+	1	NA	NA	NA	14923	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.010000	0.298507	
mm_138417.1	chr17	35069309	35069509	+	1	NA	NA	NA	2084	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.035000	0.582090	
mm_173104.1	chrX	152923660	152923860	-	1	NA	NA	NA	-82709	NM_001137547	635253	Mm.426169	NM_001137547	ENSMUSG00000067215	Usp51	AV136873	ubiquitin specific protease 51	protein-coding	0.030000	0.472637	
mm_91877.1	chr10	59583235	59583435	-	1	NA	NA	NA	33357	NM_001033259	215999	Mm.296470	NM_001033259	ENSMUSG00000009647	Mcu	2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64	mitochondrial calcium uniporter	protein-coding	0.005000	0.363184	
mm_99142.1	chr11	100415618	100415818	+	1	NA	NA	NA	24	NM_001163481	14230	Mm.3894	NM_010221	ENSMUSG00000001555	Fkbp10	AI325255|FKBP-10|FKBP-65|FKBP65|Fkbp-rs1|Fkbp1-rs|Fkbp6|Fkbprp	FK506 binding protein 10	protein-coding	0.045000	0.691542	
mm_13712.1	chr2	117162471	117162671	+	1	NA	NA	NA	-22556	NR_030440	732489		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.005000	0.373134	-1(GGCCATAAATGC,-,0.00)
mm_68288.1	chr7	105633463	105633663	-	1	NA	NA	NA	8	NM_018880	55992	Mm.29290	NM_018880	ENSMUSG00000036989	Trim3	BERP1|HAC1|Rnf22	tripartite motif-containing 3	protein-coding	0.165000	0.845771	
mm_128079.1	chr15	27670849	27671049	-	1	NA	NA	NA	10593	NM_001242424	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.010000	0.447761	
mm_44670.1	chr5	29478534	29478734	-	1	NA	NA	NA	-164	NM_019944	15285	Mm.103760	NM_019944	ENSMUSG00000001566	Mnx1	HB9|Hlxb9|MNR2	motor neuron and pancreas homeobox 1	protein-coding	0.090000	0.691542	
mm_15167.1	chr2	154011355	154011555	+	1	NA	NA	NA	3179	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.010000	0.457711	-48(CTCCATTAAAAC,-,0.00)
mm_28293.1	chr3	89093263	89093463	-	1	NA	NA	NA	0	NM_001083807	72296	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.075000	0.661692	
mm_93601.1	chr10	117217249	117217449	-	1	NA	NA	NA	7158	NM_026570	64050	Mm.233529	NM_026570	ENSMUSG00000020171	Yeats4	4930573H17Rik|B230215M10Rik|GAS41|NuBI-1	YEATS domain containing 4	protein-coding	0.065000	0.532338	
mm_90986.1	chr10	13832642	13832842	-	1	NA	NA	NA	36215	NM_025446	66253	Mm.45755	NM_025446	ENSMUSG00000019806	Aig1	1500031O19Rik|AV064870|AW413422|CGI-103	androgen-induced 1	protein-coding	0.020000	0.452736	
mm_150879.1	chr19	45076540	45076740	+	1	NA	NA	NA	501	NM_178929	107250	Mm.24417	NM_178929	ENSMUSG00000025213	Kazald1	AI842353|Bono1|IGFBP-rP10	Kazal-type serine peptidase inhibitor domain 1	protein-coding	0.025000	0.542289	-36(GCTTTTATACAG,+,0.00)
mm_12904.1	chr2	84809595	84809795	+	1	NA	NA	NA	10867	NM_019949	56791	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.000000	0.398010	
mm_21999.1	chr2	167744000	167744200	-	1	NA	NA	NA	52923	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.010000	0.547264	
mm_171227.1	chr3	6461924	6462124	-	1	NA	NA	NA	158419	NM_027048	69347	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	0.050000	0.572139	
mm_115277.1	chr13	111687669	111687869	+	1	NA	NA	NA	1591	NM_172593	218613	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0.050000	0.557214	
mm_138233.1	chr17	34398716	34398916	+	1	NA	NA	NA	-4	NM_001001177	407788	Mm.73205	NM_001001177	ENSMUSG00000057246	BC051142	NG8|TSBP|Tesb|Tesbp	cDNA sequence BC051142	protein-coding	0.045000	0.582090	
mm_111677.1	chr12	103355712	103355912	-	1	NA	NA	NA	189	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.015000	0.487562	
mm_111900.1	chr12	108710884	108711084	-	1	NA	NA	NA	-8678	NM_027299	70059	Mm.207605	NM_027299	ENSMUSG00000021263	Degs2	2210008A03Rik|AI852933|DES2	delta(4)-desaturase, sphingolipid 2	protein-coding	0.005000	0.457711	
mm_87357.1	chr10	43695360	43695560	+	1	NA	NA	NA	-50698	NR_040581	69443	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0.020000	0.487562	
mm_94688.1	chr11	19924261	19924461	+	1	NA	NA	NA	-81	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.050000	0.522388	
mm_34422.1	chr4	145274541	145274741	+	1	NA	NA	NA	-27771	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.010000	0.353234	
mm_65263.1	chr7	19921031	19921231	-	1	NA	NA	NA	12	NM_027514	52118	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.065000	0.601990	
mm_138649.1	chr17	35866950	35867150	+	1	NA	NA	NA	435	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.025000	0.537313	
mm_62642.1	chr7	107665496	107665696	+	1	NA	NA	NA	58752	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.015000	0.532338	
mm_87852.1	chr10	61089272	61089472	+	1	NA	NA	NA	41	NM_025273	13180	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.065000	0.656716	
mm_91117.1	chr10	19188556	19188756	-	1	NA	NA	NA	21418	NR_038022	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.020000	0.472637	
mm_167925.1	chrX	102928272	102928472	+	1	NA	NA	NA	0	NR_045422	69388	Mm.138009	NR_045422	ENSMUSG00000109745	1700018G05Rik	-	RIKEN cDNA 1700018G05 gene	ncRNA	0.025000	0.567164	-32(GCATTTATACTC,+,0.00)
mm_140557.1	chr17	7874776	7874976	-	1	NA	NA	NA	-51124	NM_145968	72536	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik	T cell activation Rho GTPase activating protein	protein-coding	0.030000	0.552239	
mm_130492.1	chr15	98804002	98804202	-	1	NA	NA	NA	3823	NM_001013741	13199	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.070000	0.542289	
mm_154933.1	chrX	35888687	35888887	+	1	NA	NA	NA	-45	NM_001009947	75974	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	0.110000	0.726368	
mm_70706.1	chr8	15057579	15057779	+	1	NA	NA	NA	26	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.000000	0.492537	-58(GGCCATAAATGG,-,0.00),-56(CCATAAATGGGG,+,0.00)
mm_59511.1	chr7	27580812	27581012	+	1	NA	NA	NA	-10640	NM_001110208	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.010000	0.562189	
mm_65384.1	chr7	25091144	25091344	-	1	NA	NA	NA	5931	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.010000	0.502488	
mm_131848.1	chr16	23060289	23060489	+	1	NA	NA	NA	2089	NM_001102412	16644	Mm.2160	NM_023125	ENSMUSG00000022875	Kng1	Kng	kininogen 1	protein-coding	0.010000	0.522388	
mm_171531.1	chr4	146750490	146750690	-	1	NA	NA	NA	-203717	NR_045468	67524	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	0.060000	0.567164	
mm_16484.1	chr2	180893030	180893230	+	1	NA	NA	NA	-910	NR_029538	723951		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA	0.140000	0.711443	
mm_154128.1	chr19	57251583	57251783	-	1	NA	NA	NA	-22277	NR_045319	78120	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	0.010000	0.417910	-7(TTTTTTAAAGGT,+,0.00)
mm_48057.1	chr5	136565614	136565814	-	1	NA	NA	NA	267	NM_001291239	13047	Mm.320317	NM_009986	ENSMUSG00000029705	Cux1	CDP|Cutl1|Cux|Cux-1	cut-like homeobox 1	protein-coding	0.065000	0.641791	
mm_167013.1	chr7	62423180	62423380	-	1	NA	NA	NA	-3141	NM_011746	22652	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	0.000000	0.492537	
mm_8512.1	chr1	154726564	154726764	-	1	NA	NA	NA	-744	NM_009782	12290	Mm.267517	NM_009782	ENSMUSG00000004110	Cacna1e	A430040I15|BII|Cach6|Cacnl1a6|Cav2.3|Cchra1|alpha1E	calcium channel, voltage-dependent, R type, alpha 1E subunit	protein-coding	0.080000	0.606965	
mm_131491.1	chr16	17276211	17276411	+	1	NA	NA	NA	11	NM_177473	224019	Mm.246388	NM_177473	ENSMUSG00000055692	Tmem191c	4933405M22Rik|D16Bwg1494e|MNCb-4137	transmembrane protein 191C	protein-coding	0.075000	0.661692	
mm_105008.1	chr11	100386675	100386875	-	1	NA	NA	NA	11015	NM_010593	16480	Mm.299774	NM_010593	ENSMUSG00000001552	Jup	Ctnng|D930025P04Rik|PG	junction plakoglobin	protein-coding	0.015000	0.601990	42(CCTTTTCTACTG,+,0.00)
mm_90000.1	chr10	112270019	112270219	+	1	NA	NA	NA	-1004	NM_001025581	268345	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0.055000	0.621891	
mm_31088.1	chr4	41633192	41633392	+	1	NA	NA	NA	7010	NM_027147	69638	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.025000	0.437811	
mm_78433.1	chr9	32032169	32032369	+	1	NA	NA	NA	-83867	NM_001195632	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.175000	0.781095	
mm_68663.1	chr7	118855572	118855772	-	1	NA	NA	NA	-59	NM_001168220	66356	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0.110000	0.681592	
mm_53089.1	chr6	125002076	125002276	+	1	NA	NA	NA	3566	NM_001145926	319352	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.015000	0.592040	
mm_109127.1	chr12	105776352	105776552	+	1	NA	NA	NA	-8245	NM_011112	18789	Mm.255877	NM_011112	ENSMUSG00000021111	Papola	Pap|PapIII|Plap	poly (A) polymerase alpha	protein-coding	0.025000	0.492537	
mm_68068.1	chr7	101868416	101868616	-	1	NA	NA	NA	2272	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.025000	0.522388	
mm_173251.1	chrX	92801183	92801383	+	1	NA	NA	NA	-201711	NM_173783	215641	Mm.327999	NM_173783	ENSMUSG00000067649	Mageb18	B430216B18Rik	melanoma antigen family B, 18	protein-coding	0.035000	0.592040	
mm_99663.1	chr11	105913895	105914095	+	1	NA	NA	NA	30152	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.025000	0.388060	
mm_24103.1	chr3	88140746	88140946	+	1	NA	NA	NA	-1526	NM_001310587	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.010000	0.562189	
mm_154374.1	chrM	10995	11195	+	1	NA	NA	NA	NA	NA									0.030000	0.412935	
mm_7848.1	chr1	132367787	132367987	-	1	NA	NA	NA	61	NM_001311108	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.015000	0.512438	
mm_141565.1	chr17	32272332	32272532	-	1	NA	NA	NA	11691	NM_198094	57261	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0.000000	0.318408	
mm_147121.1	chr18	35740366	35740566	-	1	NA	NA	NA	88	NM_001289592	72512	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0.015000	0.507463	
mm_34617.1	chr4	150416823	150417023	+	1	NA	NA	NA	135007	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.000000	0.238806	
mm_87380.1	chr10	44611731	44611931	+	1	NA	NA	NA	-153083	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.005000	0.368159	-87(GCTTTTAGGCGT,+,0.00)
mm_162707.1	chr10	23350236	23350436	-	1	NA	NA	NA	-393	NM_010167	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.075000	0.631841	
mm_127527.1	chr15	102089879	102090079	+	1	NA	NA	NA	-13009	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.045000	0.597015	
mm_98538.1	chr11	95009862	95010062	+	1	NA	NA	NA	83	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.120000	0.716418	
mm_144691.1	chr18	34855482	34855682	+	1	NA	NA	NA	-5625	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.020000	0.592040	
mm_110254.1	chr12	31634434	31634634	-	1	NA	NA	NA	63	NM_007530	12033	Mm.242379	NM_007530	ENSMUSG00000020650	Bcap29	AW208404|Bap29	B cell receptor associated protein 29	protein-coding	0.175000	0.791045	
mm_138665.1	chr17	35874838	35875038	+	1	NA	NA	NA	-4840	NM_026987	69192	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	0.015000	0.542289	
mm_168286.1	chr11	100534465	100534665	-	1	NA	NA	NA	-6565	NM_001199296	104112	Mm.282039	NM_134037	ENSMUSG00000020917	Acly	A730098H14Rik|AW538652	ATP citrate lyase	protein-coding	0.010000	0.532338	-31(GCTTTAAGACCC,+,0.00)
mm_44888.1	chr5	34941972	34942172	-	1	NA	NA	NA	-7376	NM_173402	71729	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.015000	0.507463	
mm_100266.1	chr11	117361217	117361417	+	1	NA	NA	NA	29004	NM_001113488	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.035000	0.522388	
mm_152230.1	chr19	8707950	8708150	-	1	NA	NA	NA	5847	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.030000	0.552239	
mm_61407.1	chr7	73418532	73418732	+	1	NA	NA	NA	-42858	NR_040324	319783	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.015000	0.577114	
mm_111828.1	chr12	107131419	107131619	-	1	NA	NA	NA	-415195	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.015000	0.497512	
mm_165791.1	chr3	136061308	136061508	+	1	NA	NA	NA	-221139	NR_040540	71038	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	0.010000	0.308458	
mm_2027.1	chr1	87181170	87181370	+	1	NA	NA	NA	-2044	NM_027084	69453	Mm.84618	NM_027084	ENSMUSG00000036480	Prss56	1700027L20Rik	protease, serine 56	protein-coding	0.005000	0.512438	
mm_147255.1	chr18	38631515	38631715	-	1	NA	NA	NA	-30347	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.040000	0.597015	-34(GGCTCTTAAAGA,-,0.00),-33(GCTCTTAAAGAG,+,0.00),-31(TCTTAAAGAGAC,+,0.00)
mm_146382.1	chr18	82585305	82585505	+	1	NA	NA	NA	30897	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.025000	0.457711	
mm_163072.1	chr11	67292808	67293008	+	1	NA	NA	NA	15784	NM_177369	17885	Mm.340163	NM_177369	ENSMUSG00000055775	Myh8	4832426G23Rik|AI327267|MHCp|MyHC-pn|Myhs-p|Myhsp	myosin, heavy polypeptide 8, skeletal muscle, perinatal	protein-coding	0.010000	0.472637	
mm_132590.1	chr16	38444212	38444412	+	1	NA	NA	NA	8377	NM_007414	11544	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.010000	0.497512	
mm_143377.1	chr17	67868162	67868362	-	1	NA	NA	NA	82678	NM_001347410	268970	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0.005000	0.353234	-94(TGCCATTAAAAC,-,0.00)
mm_22079.1	chr2	168765153	168765353	-	1	NA	NA	NA	1948	NM_201395	99377	Mm.434054	NM_175303	ENSMUSG00000027547	Sall4	5730441M18Rik|AA407717|AL022809|AW536104|C330011P20Rik|C78083|C78563|Tex20	sal-like 4 (Drosophila)	protein-coding	0.070000	0.616915	
mm_36128.1	chr4	58987024	58987224	-	1	NA	NA	NA	-46	NM_025968	67103	Mm.34497	NM_025968	ENSMUSG00000028378	Ptgr1	2510002C21Rik|Ltb4dh|Zadh3	prostaglandin reductase 1	protein-coding	0.035000	0.567164	
mm_112153.1	chr12	113265040	113265240	-	1	NA	NA	NA	79237	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.015000	0.572139	
mm_148169.1	chr18	78057266	78057466	-	1	NA	NA	NA	-98	NM_001101038	620235	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0.030000	0.611940	
mm_48750.1	chr5	147894745	147894945	-	1	NA	NA	NA	-43	NM_027872	71706	Mm.153218	NM_027872	ENSMUSG00000029650	Slc46a3	1200006F02Rik	solute carrier family 46, member 3	protein-coding	0.100000	0.651741	
mm_29351.1	chr3	108439584	108439784	-	1	NA	NA	NA	5575	NM_011319	20226	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0.005000	0.373134	
mm_40729.1	chr5	66053044	66053244	+	1	NA	NA	NA	45035	NM_139065	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.040000	0.452736	
mm_42387.1	chr5	114935941	114936141	+	1	NA	NA	NA	-6161	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.010000	0.542289	
mm_36176.1	chr4	62205027	62205227	-	1	NA	NA	NA	3075	NM_001290353	22696	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0.005000	0.407960	
mm_84736.1	chr9	75160592	75160792	-	1	NA	NA	NA	-71322	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.015000	0.492537	
mm_126968.1	chr15	93341152	93341352	+	1	NA	NA	NA	-4317	NM_024189	67057	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0.010000	0.452736	
mm_127872.1	chr15	8444342	8444542	-	1	NA	NA	NA	21	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.095000	0.721393	
mm_89133.1	chr10	85185049	85185249	+	1	NA	NA	NA	-95	NM_007771	12952	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0.135000	0.696517	
mm_165106.1	chr19	56424552	56424752	-	1	NA	NA	NA	27523	NM_007611	12369	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.025000	0.482587	
mm_57677.1	chr6	128495164	128495364	-	1	NA	NA	NA	31456	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.015000	0.512438	
mm_169143.1	chr13	62129781	62129981	+	1	NA	NA	NA	-9	NM_001039239	630579	Mm.440905	NM_001039239	ENSMUSG00000074867	Zfp808	EG630579|Gm7036	zinc finger protein 80	protein-coding	0.040000	0.527363	
mm_18968.1	chr2	76810601	76810801	-	1	NA	NA	NA	135386	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.035000	0.457711	
mm_54633.1	chr6	38703438	38703638	-	1	NA	NA	NA	40469	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.030000	0.606965	
mm_88315.1	chr10	75517944	75518144	+	1	NA	NA	NA	2	NM_026095	67332	Mm.45151	NM_026095	ENSMUSG00000020180	Snrpd3	1700043E15Rik|2310009E13Rik|AW046420|SMD3	small nuclear ribonucleoprotein D3	protein-coding	0.065000	0.552239	
mm_6115.1	chr1	64121195	64121395	-	1	NA	NA	NA	94	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.040000	0.567164	
mm_155067.1	chrX	42504678	42504878	+	1	NA	NA	NA	-544	NM_001313691	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	0.010000	0.487562	-35(GCCTATATAGGG,+,0.00),-35(GCCTATATAGGG,-,0.00)
mm_131129.1	chr16	5885381	5885581	+	1	NA	NA	NA	688	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.105000	0.686567	
mm_163834.1	chr14	19417668	19417868	+	1	NA	NA	NA	184819	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.030000	0.363184	
mm_65409.1	chr7	25237772	25237972	-	1	NA	NA	NA	-21	NM_001031667	606496	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	0.090000	0.661692	
mm_139676.1	chr17	57414174	57414374	+	1	NA	NA	NA	55588	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.398010	
mm_72614.1	chr8	84601370	84601570	+	1	NA	NA	NA	61382	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.055000	0.577114	
mm_105724.1	chr11	109011766	109011966	-	1	NA	NA	NA	91517	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.095000	0.641791	
mm_9753.1	chr1	180812230	180812430	-	1	NA	NA	NA	1275	NM_008210	15078	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	H3.3A	H3 histone, family 3A	protein-coding	0.045000	0.417910	
mm_13809.1	chr2	119112746	119112946	+	1	NA	NA	NA	29	NM_011234	19361	Mm.330492	NM_011234	ENSMUSG00000027323	Rad51	AV304093|Rad51a|Reca	RAD51 recombinase	protein-coding	0.100000	0.582090	
mm_36758.1	chr4	101355199	101355399	-	1	NA	NA	NA	949	NR_040708	77866	Mm.137053	NR_040708	ENSMUSG00000086782	E130102H24Rik	-	RIKEN cDNA E130102H24 gene	ncRNA	0.015000	0.482587	
mm_119864.1	chr14	54476087	54476287	+	1	NA	NA	NA	87	NM_080726	140743	Mm.274727	NM_080726	ENSMUSG00000022176	Rem2	AW411893	rad and gem related GTP binding protein 2	protein-coding	0.040000	0.577114	1(GTATTTAAAGGG,+,0.00),1(GTATTTAAAGGG,-,0.00)
mm_149473.1	chr19	11696953	11697153	+	1	NA	NA	NA	-2	NM_001033283	225923	Mm.297596	NM_001033283	ENSMUSG00000055933	Oosp3	Gm97	oocyte secreted protein 3	protein-coding	0.010000	0.383085	
mm_127561.1	chr15	102203409	102203609	+	1	NA	NA	NA	-136	NM_001289694	68744	Mm.352945	NM_153194	ENSMUSG00000046897	Zfp740	1110034O07Rik|AW548228|Znf740	zinc finger protein 740	protein-coding	0.120000	0.766169	
mm_45653.1	chr5	77095080	77095280	-	1	NA	NA	NA	87	NM_001159901	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.080000	0.666667	
mm_54296.1	chr6	29380377	29380577	-	1	NA	NA	NA	36	NM_007538	12057	Mm.56987	NM_007538	ENSMUSG00000058831	Opn1sw	AW551857|Bcp	opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)	protein-coding	0.015000	0.467662	-31(TCTTTAAAGGAG,+,0.00),14(GTCTATAAGAGG,-,0.00)
mm_42746.1	chr5	120753806	120754006	+	1	NA	NA	NA	-4058	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.005000	0.328358	
mm_73483.1	chr8	107031044	107031244	+	1	NA	NA	NA	-182	NM_126165	116733	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0.085000	0.701493	73(CCCTCTTAGAGG,-,0.00),74(CCTCTTAGAGGA,+,0.00)
mm_166424.1	chr5	137151969	137152169	-	1	NA	NA	NA	-35862	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.020000	0.512438	
mm_119203.1	chr14	32833886	32834086	+	1	NA	NA	NA	24	NM_001164485	105511	Mm.32231	NM_001164485	ENSMUSG00000078127	Fam170b	4922501K12Rik|AI449756	family with sequence similarity 170, member B	protein-coding	0.020000	0.547264	
mm_101236.1	chr11	20631738	20631938	-	1	NA	NA	NA	-139	NM_001038625	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.070000	0.721393	79(TGCCATAAATGC,-,0.00)
mm_9160.1	chr1	170960762	170960962	-	1	NA	NA	NA	15209	NM_001077189	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.015000	0.427861	
mm_63962.1	chr7	139943797	139943997	+	1	NA	NA	NA	41	NM_009482	22286	Mm.10205	NM_009482	ENSMUSG00000047751	Utf1	AI505934	undifferentiated embryonic cell transcription factor 1	protein-coding	0.095000	0.671642	
mm_151787.1	chr19	5388574	5388774	-	1	NA	NA	NA	29	NM_016882	20227	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	0.115000	0.661692	
mm_32220.1	chr4	101717358	101717558	+	1	NA	NA	NA	51	NM_010704	16847	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.105000	0.681592	
mm_6121.1	chr1	64122189	64122389	-	1	NA	NA	NA	-900	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.110000	0.661692	
mm_114825.1	chr13	91861337	91861537	+	1	NA	NA	NA	15448	NM_198415	76722	Mm.316438	NM_198415	ENSMUSG00000021622	Ckmt2	2300008A19Rik|ScCKmit	creatine kinase, mitochondrial 2	protein-coding	0.015000	0.537313	
mm_18182.1	chr2	45111047	45111247	-	1	NA	NA	NA	9	NR_110572	433424	Mm.441408	NR_110571	ENSMUSG00000052248	Zeb2os	Gm13476|OTTMUSG00000012358|Zeb2nat	zinc finger E-box binding homeobox 2, opposite strand	ncRNA	0.045000	0.537313	-33(TCTTTTATAGCC,+,0.00)
mm_96784.1	chr11	69941227	69941427	+	1	NA	NA	NA	4999	NM_001347634	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.010000	0.492537	
mm_49583.1	chr6	30642787	30642987	+	1	NA	NA	NA	3669	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.025000	0.492537	
mm_77492.1	chr8	122575363	122575563	-	1	NA	NA	NA	1444	NM_009698	11821	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	0.020000	0.587065	
mm_115067.1	chr13	101442346	101442546	+	1	NA	NA	NA	-44866	NR_046187	78136	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	0.015000	0.437811	-45(GTCCATTAAAGA,-,0.00)
mm_64250.1	chr7	141704337	141704537	+	1	NA	NA	NA	14097	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.015000	0.412935	
mm_51570.1	chr6	83742890	83743090	+	1	NA	NA	NA	-27	NM_134157	110935	Mm.220823	NM_134157	ENSMUSG00000006269	Atp6v1b1	AW208839|Atp6b1|D630003L15|D630030L16Rik|D630039P21Rik|Vpp-3|Vpp3	ATPase, H+ transporting, lysosomal V1 subunit B1	protein-coding	0.015000	0.592040	
mm_58941.1	chr7	18245136	18245336	+	1	NA	NA	NA	-111	NM_153749	266815	Mm.106769	NM_153749	ENSMUSG00000054005	Mill1	5530400I18Rik	MHC I like leukocyte 1	protein-coding	0.005000	0.452736	
mm_170665.1	chr2	114895015	114895215	-	1	NA	NA	NA	-240187	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	0.020000	0.402985	
mm_353.1	chr1	33578895	33579095	+	1	NA	NA	NA	90799	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	0.005000	0.502488	
mm_127184.1	chr15	98992707	98992907	+	1	NA	NA	NA	6842	NR_045991	75951	Mm.441657	NR_045991	ENSMUSG00000097587	4930578M01Rik	3010001K12Rik	RIKEN cDNA 4930578M01 gene	ncRNA	0.025000	0.457711	
mm_22474.1	chr3	5218502	5218702	+	1	NA	NA	NA	48	NM_030708	80892	Mm.41522	NM_030708	ENSMUSG00000025255	Zfhx4	A930021B15|C130041O22Rik|Zfh-4|Zfh4	zinc finger homeodomain 4	protein-coding	0.040000	0.442786	
mm_7063.1	chr1	87573748	87573948	-	1	NA	NA	NA	22	NM_001111314	53972	Mm.435439	NM_019867	ENSMUSG00000026259	Ngef	Tims2|ephexin	neuronal guanine nucleotide exchange factor	protein-coding	0.010000	0.577114	
mm_140500.1	chr17	4122013	4122213	-	1	NA	NA	NA	-11	NR_045462	78043	Mm.398313	NR_045462		4930548J01Rik	1700113K09Rik	RIKEN cDNA 4930548J01 gene	ncRNA	0.000000	0.402985	
mm_12081.1	chr2	59811859	59812059	+	1	NA	NA	NA	70647	NM_001159636	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.000000	0.323383	
mm_128204.1	chr15	35938095	35938295	-	1	NA	NA	NA	51	NM_053071	12864	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit VIc	protein-coding	0.065000	0.542289	
mm_9907.1	chr1	187215341	187215541	-	1	NA	NA	NA	5	NM_029067	74717	Mm.250430	NM_028848	ENSMUSG00000026611	Spata17	1700065F16Rik|4930504I07Rik|4930513F16Rik|MSRG-11	spermatogenesis associated 17	protein-coding	0.060000	0.532338	
mm_4055.1	chr1	165825669	165825869	+	1	NA	NA	NA	37088	NM_001113392	12503	Mm.217308	NM_031162	ENSMUSG00000005763	Cd247	4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz	CD247 antigen	protein-coding	0.010000	0.487562	
mm_85788.1	chr9	109082293	109082493	-	1	NA	NA	NA	-12	NM_183250	66167	Mm.2395	NM_183250	ENSMUSG00000091537	Tma7	1110017O22Rik|Ccdc72	translational machinery associated 7	protein-coding	0.060000	0.597015	-81(CCTTTAAAATAC,+,0.00)
mm_51430.1	chr6	78466307	78466507	+	1	NA	NA	NA	2467	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.005000	0.437811	
mm_55869.1	chr6	83506158	83506358	-	1	NA	NA	NA	711	NM_013764	27369	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0.015000	0.422886	
mm_56302.1	chr6	91758518	91758718	-	1	NA	NA	NA	48775	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.005000	0.298507	
mm_140564.1	chr17	8299575	8299775	-	1	NA	NA	NA	-11428	NM_134114	106489	Mm.311080	NM_134114	ENSMUSG00000073468	Sft2d1	5630401J11Rik|AA409698	SFT2 domain containing 1	protein-coding	0.000000	0.512438	
mm_153016.1	chr19	30625426	30625626	-	1	NA	NA	NA	-76030	NM_010051	13380	Mm.214717	NM_010051	ENSMUSG00000024868	Dkk1	mdkk-1	dickkopf WNT signaling pathway inhibitor 1	protein-coding	0.005000	0.442786	
mm_172661.1	chr8	41936733	41936933	+	1	NA	NA	NA	109566	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	0.000000	0.383085	
mm_171286.1	chr3	90079475	90079675	+	1	NA	NA	NA	54	NM_001293749	59069	Mm.240839	NM_022314	ENSMUSG00000027940	Tpm3	TM30nm|TMnm|Tm5NM|Tpm-5|Tpm5|Trop-5|gamma-TM|hTM30nm|hTMnm	tropomyosin 3, gamma	protein-coding	0.090000	0.646766	
mm_11551.1	chr2	32720994	32721194	+	1	NA	NA	NA	39	NM_013781	27387	Mm.9593	NM_013781	ENSMUSG00000059013	Sh2d3c	Chat|Nsp3|Shep1	SH2 domain containing 3C	protein-coding	0.010000	0.547264	
mm_47999.1	chr5	136160856	136161056	-	1	NA	NA	NA	9700	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.025000	0.472637	
mm_3107.1	chr1	134494901	134495101	+	1	NA	NA	NA	341	NM_145510	98710	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	0.070000	0.661692	
mm_81326.1	chr9	108497825	108498025	+	1	NA	NA	NA	7249	NM_027804	71472	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	0.045000	0.572139	
mm_69816.1	chr7	141263904	141264104	-	1	NA	NA	NA	2420	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.020000	0.572139	
mm_112943.1	chr13	20993272	20993472	+	1	NA	NA	NA	79927	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.005000	0.422886	
mm_34262.1	chr4	141421602	141421802	+	1	NA	NA	NA	923	NM_013868	29818	Mm.46181	NM_013868	ENSMUSG00000006221	Hspb7	27kDa|Hsp25-2|cvHsp	heat shock protein family, member 7 (cardiovascular)	protein-coding	0.045000	0.651741	-33(GGCCTTATAAAG,-,0.00),-31(CCTTATAAAGCG,+,0.00)
mm_127713.1	chr15	103014037	103014237	+	1	NA	NA	NA	129	NM_175730	15424	Mm.103825	NM_175730	ENSMUSG00000022485	Hoxc5	AI181837|Hox-3.4|Hox-6.2	homeobox C5	protein-coding	0.030000	0.497512	
mm_115392.1	chr13	113615684	113615884	+	1	NA	NA	NA	2780	NM_130796	170625	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.025000	0.522388	
mm_82045.1	chr9	122351631	122351831	+	1	NA	NA	NA	115	NM_026179	67469	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0.165000	0.761194	-33(CGGTCTTAAGGG,-,0.00)
mm_155584.1	chrX	78737679	78737879	+	1	NA	NA	NA	16	NM_001164739	70864	Mm.66681	NM_001164739	ENSMUSG00000078315	Fam47c	4921509A18Rik|Fam47a|Fam47a-ps	family with sequence similarity 47, member C	protein-coding	0.015000	0.527363	
mm_70033.1	chr7	142576650	142576850	-	1	NA	NA	NA	397	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.030000	0.537313	
mm_12004.1	chr2	57265048	57265248	+	1	NA	NA	NA	26766	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.015000	0.477612	38(CTGTCTATAAGG,-,0.00)
mm_22533.1	chr3	8541764	8541964	+	1	NA	NA	NA	32337	NM_025285	20257	Mm.29580	NM_025285	ENSMUSG00000027500	Stmn2	AI159727|SCG10|Scgn10|Stmb2	stathmin-like 2	protein-coding	0.045000	0.477612	
mm_169506.1	chr14	7963323	7963523	+	1	NA	NA	NA	30759	NM_007870	13421	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.020000	0.477612	
mm_13423.1	chr2	104585977	104586177	+	1	NA	NA	NA	-4407	NM_177253	228410	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	0.000000	0.378109	
mm_78988.1	chr9	45399610	45399810	+	1	NA	NA	NA	1	NR_028499	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.015000	0.557214	-34(TGCCTTATAAGA,-,0.00),-32(CCTTATAAGACC,+,0.00)
mm_69557.1	chr7	135699948	135700148	-	1	NA	NA	NA	16331	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.000000	0.388060	
mm_132785.1	chr16	44943625	44943825	+	1	NA	NA	NA	47	NM_001128132	74603	Mm.297337	NM_027578	ENSMUSG00000036172	Cd200r3	4733401I18Rik|4833409J19Rik|AI505817|BB106877|mCD200RLb	CD200 receptor 3	protein-coding	0.010000	0.442786	
mm_170392.1	chr1	86356862	86357062	-	1	NA	NA	NA	-635	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.000000	0.427861	
mm_41048.1	chr5	86104005	86104205	+	1	NA	NA	NA	32359	NM_001310639	56792	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.005000	0.348259	
mm_115134.1	chr13	104430798	104430998	+	1	NA	NA	NA	143063	NM_001081020	108154	Mm.208125	NM_175496	ENSMUSG00000046169	Adamts6	A930019D11Rik|ADAM-TS6|b2b1879.1Clo|b2b2029Clo|b2b2182Clo|b2b2187.1Clo|b2b2228Clo	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 6	protein-coding	0.010000	0.328358	
mm_148630.1	chr19	5454959	5455159	+	1	NA	NA	NA	2504	NM_198616	240514	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	0.040000	0.616915	
mm_91014.1	chr10	15520713	15520913	-	1	NA	NA	NA	-270964	NR_131087	77538	Mm.128235	NR_131087		C330004P14Rik	-	RIKEN cDNA C330004P14 gene	ncRNA	0.010000	0.442786	
mm_128916.1	chr15	73677247	73677447	-	1	NA	NA	NA	30158	NM_173365	239530	Mm.122997	NM_173365	ENSMUSG00000045281	Gpr20	A430106B11Rik	G protein-coupled receptor 20	protein-coding	0.015000	0.532338	
mm_25130.1	chr3	102262319	102262519	+	1	NA	NA	NA	14	NR_040391	319951	Mm.225196	NR_040391	ENSMUSG00000105891	A230001M10Rik	-	RIKEN cDNA A230001M10 gene	ncRNA	0.010000	0.442786	
mm_115687.1	chr13	13590028	13590228	-	1	NA	NA	NA	-281	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.040000	0.512438	2(GCCCCTAAAAGC,-,0.00)
mm_74049.1	chr8	122230100	122230300	+	1	NA	NA	NA	-51941	NM_009569	22761	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.145000	0.776119	
mm_11750.1	chr2	38432433	38432633	+	1	NA	NA	NA	-79164	NM_021606	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.005000	0.547264	-33(GAGTATTAAAAG,-,0.00)
mm_35384.1	chr4	33247921	33248121	-	1	NA	NA	NA	766	NM_001033225	108767	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.100000	0.756219	
mm_128576.1	chr15	57892218	57892418	-	1	NA	NA	NA	100	NM_024207	67819	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.120000	0.716418	
mm_29444.1	chr3	110143607	110143807	-	1	NA	NA	NA	-235	NM_030699	80883	Mm.39262	NM_030699	ENSMUSG00000059857	Ntng1	A930010C08Rik|AI853992|Lmnt1	netrin G1	protein-coding	0.110000	0.681592	
mm_121199.1	chr14	103051741	103051941	+	1	NA	NA	NA	4829	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.477612	-46(GCTTTAAAGACC,+,0.00)
mm_114937.1	chr13	96011419	96011619	+	1	NA	NA	NA	-119597	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.000000	0.447761	-13(AGCCTTAAATGC,-,0.00)
mm_120819.1	chr14	75136214	75136414	+	1	NA	NA	NA	-111	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.010000	0.412935	
mm_94555.1	chr11	11557293	11557493	+	1	NA	NA	NA	68127	NM_028669	73862	Mm.159077	NM_028669	ENSMUSG00000020191	4930415F15Rik	-	RIKEN cDNA 4930415F15 gene	protein-coding	0.025000	0.507463	
mm_93530.1	chr10	115361773	115361973	-	1	NA	NA	NA	389	NM_133683	67226	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0.020000	0.388060	-35(AGGTATATAAAG,-,0.00)
mm_101977.1	chr11	50376863	50377063	-	1	NA	NA	NA	-756	NM_021510	59013	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.110000	0.671642	
mm_91095.1	chr10	19062075	19062275	-	1	NA	NA	NA	-46765	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.025000	0.507463	
mm_26390.1	chr3	142570881	142571081	+	1	NA	NA	NA	10485	NM_001289493	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.015000	0.517413	
mm_63782.1	chr7	131619313	131619513	+	1	NA	NA	NA	58919	NM_001317350	12237	Mm.927	NM_009774	ENSMUSG00000066979	Bub3	AU019800|AU021329|AU043350|AW146323|C78067	BUB3 mitotic checkpoint protein	protein-coding	0.000000	0.412935	
mm_147340.1	chr18	43059342	43059542	-	1	NA	NA	NA	29	NM_028392	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.010000	0.537313	
mm_88258.1	chr10	73821764	73821964	+	1	NA	NA	NA	-3	NM_001142760	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|ENSMUSG00000046980|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0.025000	0.537313	-33(CTGTATAAAAGC,-,0.00)
mm_94959.1	chr11	30771704	30771904	+	1	NA	NA	NA	29	NM_134013	103554	Mm.240066	NM_134013	ENSMUSG00000040850	Psme4	AA409398|AU041366|TEMO|mKIAA0077	proteasome (prosome, macropain) activator subunit 4	protein-coding	0.145000	0.796020	
mm_85993.1	chr9	112200148	112200348	-	1	NA	NA	NA	-12319	NM_028755	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.005000	0.373134	
mm_69280.1	chr7	127993738	127993938	-	1	NA	NA	NA	29	NM_023258	66824	Mm.24163	NM_023258	ENSMUSG00000030793	Pycard	9130417A21Rik|Asc|CARD5|TMS-1|TNS1|masc	PYD and CARD domain containing	protein-coding	0.010000	0.547264	
mm_129637.1	chr15	80254882	80255082	-	1	NA	NA	NA	-202	NM_001287180	11911	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	0.045000	0.587065	
mm_28859.1	chr3	97208810	97209010	-	1	NA	NA	NA	18454	NM_029933	77578	Mm.226175	NM_029933	ENSMUSG00000038256	Bcl9	2610202E01Rik|8030475K17Rik|A330041G23Rik|Gm130	B cell CLL/lymphoma 9	protein-coding	0.030000	0.577114	
mm_59919.1	chr7	30419832	30420032	+	1	NA	NA	NA	-78	NM_011827	23900	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	0.020000	0.517413	
mm_19581.1	chr2	101650578	101650778	-	1	NA	NA	NA	-1146	NM_009019	19373	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0.000000	0.452736	
mm_18144.1	chr2	45064439	45064639	-	1	NA	NA	NA	-41362	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.467662	-87(TGCTTTTAAAGA,-,0.00),-86(GCTTTTAAAGAA,+,0.00)
mm_123660.1	chr14	69244145	69244345	-	1	NA	NA	NA	40858	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.005000	0.333333	
mm_163580.1	chr13	33985248	33985448	+	1	NA	NA	NA	17446	NM_001243192	20719	Mm.252210	NM_009254	ENSMUSG00000060147	Serpinb6a	4930482L21Rik|D330015H01Rik|PI-6|Serpinb6|Spi3|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6a	protein-coding	0.005000	0.432836	
mm_6109.1	chr1	64042240	64042440	-	1	NA	NA	NA	161	NR_105864	102466760		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.030000	0.507463	
mm_59012.1	chr7	19228835	19229035	+	1	NA	NA	NA	546	NM_207525	403187	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.035000	0.527363	
mm_160405.1	chr8	71566500	71566700	-	1	NA	NA	NA	49	NM_145598	234404	Mm.213208	NM_145598	ENSMUSG00000034829	Nxnl1	A930031O08Rik|RdCVF|Txnl6	nucleoredoxin-like 1	protein-coding	0.015000	0.542289	
mm_145933.1	chr18	67243401	67243601	+	1	NA	NA	NA	2329	NM_172630	225651	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	A530095G11	metallophosphoesterase 1	protein-coding	0.000000	0.383085	
mm_76704.1	chr8	94532825	94533025	-	1	NA	NA	NA	-103	NM_153507	234577	Mm.291815	NM_153507	ENSMUSG00000034361	Cpne2	3322401K10Rik	copine II	protein-coding	0.120000	0.756219	
mm_111643.1	chr12	102657799	102657999	-	1	NA	NA	NA	27121	NR_035457	100316812		NR_035457	ENSMUSG00000089324	Mir1936	mir-1936|mmu-mir-1936	microRNA 1936	ncRNA	0.025000	0.497512	
mm_97644.1	chr11	79339509	79339709	+	1	NA	NA	NA	-283	NM_010897	18015	Mm.255596	NM_010897	ENSMUSG00000020716	Nf1	AW494271|Dsk9|E030030H24Rik|Mhdadsk9|Nf-1	neurofibromin 1	protein-coding	0.095000	0.651741	
mm_67673.1	chr7	88302124	88302324	-	1	NA	NA	NA	24139	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.020000	0.383085	
mm_16.1	chr1	4858196	4858396	+	1	NA	NA	NA	-32	NM_001159751	21399	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.075000	0.597015	
mm_96443.1	chr11	67454872	67455072	+	1	NA	NA	NA	-78026	NM_008088	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.080000	0.701493	
mm_128378.1	chr15	42676720	42676920	-	1	NA	NA	NA	157	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.025000	0.502488	
mm_88543.1	chr10	78574927	78575127	+	1	NA	NA	NA	527	NM_173751	216136	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0.060000	0.577114	
mm_13760.1	chr2	118388498	118388698	+	1	NA	NA	NA	-19	NM_013719	27103	Mm.217616	NM_013719	ENSMUSG00000005102	Eif2ak4	2610011M03|GCN2|MGCN2	eukaryotic translation initiation factor 2 alpha kinase 4	protein-coding	0.080000	0.676617	-78(GTCTTTAAAGCG,+,0.00),-77(TCTTTAAAGCGC,+,0.00)
mm_108715.1	chr12	87147884	87148084	+	1	NA	NA	NA	-82	NM_153415	217734	Mm.388249	NM_153415	ENSMUSG00000034126	Pomt2	-	protein-O-mannosyltransferase 2	protein-coding	0.100000	0.641791	
mm_39792.1	chr5	30588025	30588225	+	1	NA	NA	NA	-45	NM_010608	16527	Mm.439936	NM_010608	ENSMUSG00000049265	Kcnk3	TASK|Task-1|cTBAK-1	potassium channel, subfamily K, member 3	protein-coding	0.150000	0.840796	
mm_52155.1	chr6	98018351	98018551	+	1	NA	NA	NA	26668	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.010000	0.407960	
mm_137084.1	chr17	21474161	21474361	+	1	NA	NA	NA	-14727	NM_013843	24132	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	0.005000	0.437811	
mm_143873.1	chr17	84187041	84187241	-	1	NA	NA	NA	806	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.065000	0.611940	
mm_12139.1	chr2	61726939	61727139	+	1	NA	NA	NA	15345	NM_021526	59029	Mm.218198	NM_021526	ENSMUSG00000026914	Psmd14	2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 14	protein-coding	0.000000	0.427861	
mm_117260.1	chr13	64368662	64368862	-	1	NA	NA	NA	1758	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.005000	0.502488	
mm_140191.1	chr17	83350862	83351062	+	1	NA	NA	NA	31	NM_001114362	78798	Mm.295565	NM_199466	ENSMUSG00000032624	Eml4	4930443C24Rik|AI644019	echinoderm microtubule associated protein like 4	protein-coding	0.170000	0.781095	
mm_44181.1	chr5	151252426	151252626	+	1	NA	NA	NA	-62333	NM_146258	243362	Mm.209272	NM_146258	ENSMUSG00000016128	Stard13	DLC2|GT650	StAR-related lipid transfer (START) domain containing 13	protein-coding	0.020000	0.587065	
mm_133551.1	chr16	91372788	91372988	+	1	NA	NA	NA	105	NM_001110498	15976	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.100000	0.716418	
mm_128194.1	chr15	35062279	35062479	-	1	NA	NA	NA	93427	NM_019635	56274	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0.000000	0.447761	
mm_88896.1	chr10	81150620	81150820	+	1	NA	NA	NA	14449	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.055000	0.542289	-19(CCCCCTAAAGGC,-,0.00)
mm_44048.1	chr5	147860590	147860790	+	1	NA	NA	NA	62	NM_025624	66537	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.130000	0.686567	
mm_4290.1	chr1	171766804	171767004	+	1	NA	NA	NA	-228	NM_013730	27218	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	0.000000	0.477612	
mm_141397.1	chr17	29238129	29238329	-	1	NA	NA	NA	-439	NM_153166	240058	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	0.145000	0.781095	
mm_154555.1	chrM	15311	15511	-	1	NA	NA	NA	NA	NA									0.005000	0.348259	
mm_167604.1	chr9	52048079	52048279	+	1	NA	NA	NA	238	NM_001104617	19684	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	0.150000	0.800995	
mm_17336.1	chr2	26593326	26593526	-	1	NA	NA	NA	-2006	NR_106155	102465787		NR_106155	ENSMUSG00000105799	Mir126b	mmu-mir-126b	microRNA 126b	ncRNA	0.010000	0.597015	
mm_72203.1	chr8	72573547	72573747	+	1	NA	NA	NA	1544	NM_144534	74166	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	0.030000	0.462687	
mm_135238.1	chr16	36990080	36990280	-	1	NA	NA	NA	-11044	NM_001037321	207215	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0.045000	0.517413	
mm_164183.1	chr15	76270887	76271087	+	1	NA	NA	NA	-1148	NR_045747	100038659	Mm.448549	NR_045747		Mirt2	ENSMUSG00000075583|Gm10872|Gm24562	myocardial infraction associated transcript 2	ncRNA	0.000000	0.417910	
mm_9681.1	chr1	178332211	178332411	-	1	NA	NA	NA	5473	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.010000	0.368159	
mm_86306.1	chr9	122351505	122351705	-	1	NA	NA	NA	-11	NM_026179	67469	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0.165000	0.736318	
mm_88049.1	chr10	67539845	67540045	+	1	NA	NA	NA	2015	NM_001347458	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.020000	0.582090	
mm_127446.1	chr15	101270540	101270740	+	1	NA	NA	NA	3794	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.015000	0.601990	
mm_8609.1	chr1	156035874	156036074	-	1	NA	NA	NA	-62	NM_001160182	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.100000	0.636816	
mm_4345.1	chr1	171856908	171857108	+	1	NA	NA	NA	17311	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.005000	0.288557	16(AGCCATTAAAAG,-,0.00),18(CCATTAAAAGTC,+,0.00)
mm_71455.1	chr8	46521699	46521899	+	1	NA	NA	NA	-30270	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.005000	0.398010	
mm_24824.1	chr3	95651392	95651592	+	1	NA	NA	NA	-7229	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.035000	0.537313	
mm_10037.1	chr1	192855565	192855765	-	1	NA	NA	NA	87	NM_198247	214791	Mm.22806	NM_198247	ENSMUSG00000016262	Sertad4	4833404A09|C130018M11Rik	SERTA domain containing 4	protein-coding	0.120000	0.691542	
mm_37906.1	chr4	132734747	132734947	-	1	NA	NA	NA	-2301	NM_201368	381560	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	0.005000	0.353234	
mm_112294.1	chr12	114564951	114565151	-	1	NA	NA	NA	-51357	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.010000	0.417910	
mm_99630.1	chr11	105156851	105157051	+	1	NA	NA	NA	-21856	NM_001294331	24086	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	0.055000	0.522388	
mm_54904.1	chr6	47594683	47594883	-	1	NA	NA	NA	247	NM_007971	14056	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.150000	0.736318	
mm_56378.1	chr6	94283428	94283628	-	1	NA	NA	NA	389	NM_001286786	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.140000	0.676617	
mm_14880.1	chr2	148835021	148835221	+	1	NA	NA	NA	-26	NM_009979	13013	Mm.21005	NM_009979	ENSMUSG00000027445	Cst9	M12|cresp|testatin	cystatin 9	protein-coding	0.005000	0.517413	
mm_29763.1	chr3	127194557	127194757	-	1	NA	NA	NA	33352	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.005000	0.393035	-61(AACCTTTAAAGC,-,0.00)
mm_67772.1	chr7	96951762	96951962	-	1	NA	NA	NA	335	NM_153591	244141	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.120000	0.706468	
mm_79042.1	chr9	46215867	46216067	+	1	NA	NA	NA	-12663	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.000000	0.487562	
mm_334.1	chr1	27883941	27884141	+	1	NA	NA	NA	896211	NM_001013750	210962	Mm.214178	NM_001013750	ENSMUSG00000048411	Gm597	-	predicted gene 597	protein-coding	0.000000	0.348259	
mm_104658.1	chr11	97628517	97628717	-	1	NA	NA	NA	1099	NM_175332	103551	Mm.24506	NM_175332	ENSMUSG00000043439	Epop	AA409164|AI413509|AW539173|E13|E130012A19Rik|esPRC2p48	elongin BC and polycomb repressive complex 2 associated protein	protein-coding	0.125000	0.706468	
mm_17309.1	chr2	26380527	26380727	-	1	NA	NA	NA	26	NM_172339	227644	Mm.207460	NM_172339	ENSMUSG00000036281	Snapc4	5730436L13Rik	small nuclear RNA activating complex, polypeptide 4	protein-coding	0.070000	0.641791	
mm_134508.1	chr16	19066977	19067177	-	1	NA	NA	NA	190327	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.005000	0.467662	
mm_46537.1	chr5	105701909	105702109	-	1	NA	NA	NA	1199	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.015000	0.472637	
mm_109201.1	chr12	108658594	108658794	+	1	NA	NA	NA	74	NR_029771	723909		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.025000	0.552239	
mm_75554.1	chr8	57699349	57699549	-	1	NA	NA	NA	-46394	NM_144731	108150	Mm.62886	NM_144731	ENSMUSG00000031608	Galnt7	AI225872	UDP-N-acetyl-alpha-D-galactosamine: polypeptide N-acetylgalactosaminyltransferase 7	protein-coding	0.015000	0.522388	
mm_65855.1	chr7	29281937	29282137	-	1	NA	NA	NA	-60	NM_011464	20733	Mm.295230	NM_011464	ENSMUSG00000074227	Spint2	AL024025|C76321|HAI-2	serine protease inhibitor, Kunitz type 2	protein-coding	0.080000	0.751244	
mm_4695.1	chr1	180748819	180749019	+	1	NA	NA	NA	22876	NM_133225	170760	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.015000	0.487562	33(GCTTATATAGGA,+,0.00)
mm_82181.1	chr9	123931658	123931858	+	1	NA	NA	NA	36934	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.000000	0.432836	
mm_38825.1	chr4	148952907	148953107	-	1	NA	NA	NA	146805	NM_019781	56273	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	0.035000	0.656716	
mm_25172.1	chr3	103102580	103102780	+	1	NA	NA	NA	-24876	NM_177857	329727	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	0.100000	0.716418	
mm_59154.1	chr7	24370184	24370384	+	1	NA	NA	NA	21	NM_008433	16534	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0.020000	0.626866	
mm_126861.1	chr15	89322878	89323078	+	1	NA	NA	NA	258	NM_182928	223780	Mm.210541	NM_182928	ENSMUSG00000054136	Adm2	Am2|IMD|Imdn	adrenomedullin 2	protein-coding	0.050000	0.601990	
mm_10702.1	chr2	22773878	22774078	+	1	NA	NA	NA	-349	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.010000	0.457711	-97(GGGCAGAAAAGG,-,0.00)
mm_100323.1	chr11	118145932	118146132	+	1	NA	NA	NA	-16813	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.030000	0.547264	
mm_52908.1	chr6	122819813	122820013	+	1	NA	NA	NA	-271	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.165000	0.820896	
mm_85151.1	chr9	96119108	96119308	-	1	NA	NA	NA	-221	NM_177352	235533	Mm.213651	NM_177352	ENSMUSG00000041440	Gk5	AV095337|C330018K18Rik|G630067D24Rik	glycerol kinase 5 (putative)	protein-coding	0.090000	0.592040	
mm_100007.1	chr11	114851935	114852135	+	1	NA	NA	NA	5	NM_147217	70355	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.075000	0.701493	
mm_125871.1	chr15	75596554	75596754	+	1	NA	NA	NA	-4	NM_026730	68453	Mm.46367	NM_026730	ENSMUSG00000022579	Gpihbp1	1110002J19Rik|GPI-HBP1	GPI-anchored HDL-binding protein 1	protein-coding	0.020000	0.562189	
mm_83504.1	chr9	45955166	45955366	-	1	NA	NA	NA	-17	NM_001289668	214597	Mm.379345	NM_172257	ENSMUSG00000034908	Sidt2	B930096O19|BC023957|CGI-40	SID1 transmembrane family, member 2	protein-coding	0.130000	0.691542	-52(CCCTTTAAATCC,+,0.00),52(CGCCCTTAAAGG,-,0.00),53(GCCCTTAAAGGG,-,0.00),54(CCCTTAAAGGGC,+,0.00),55(CCTTAAAGGGCC,+,0.00)
mm_141054.1	chr17	25751023	25751223	-	1	NA	NA	NA	3204	NM_018857	56047	Mm.17510	NM_018857	ENSMUSG00000063011	Msln	MPF	mesothelin	protein-coding	0.030000	0.557214	
mm_106369.1	chr11	118398336	118398536	-	1	NA	NA	NA	3495	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.040000	0.606965	
mm_99746.1	chr11	106549526	106549726	+	1	NA	NA	NA	48635	NR_030703	100216537		NR_030703	ENSMUSG00000065126	Snord104	-	small nucleolar RNA, C/D box 104	snoRNA	0.010000	0.422886	
mm_54120.1	chr6	18108974	18109174	-	1	NA	NA	NA	-13	NM_023729	74068	Mm.73091	NM_023729	ENSMUSG00000010796	Asz1	4933400N19Rik|Gasz|ORF3	ankyrin repeat, SAM and basic leucine zipper domain containing 1	protein-coding	0.070000	0.656716	
mm_102942.1	chr11	69602754	69602954	-	1	NA	NA	NA	3106	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.030000	0.532338	
mm_166861.1	chr7	24450744	24450944	+	1	NA	NA	NA	-5162	NM_199013	210145	Mm.33811	NM_199013	ENSMUSG00000062028	Irgc1	F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc	immunity-related GTPase family, cinema 1	protein-coding	0.015000	0.542289	
mm_29806.1	chr3	127789756	127789956	-	1	NA	NA	NA	-57	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.060000	0.641791	
mm_58522.1	chr7	4147099	4147299	+	1	NA	NA	NA	2673	NM_175529	243813	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.035000	0.522388	
mm_100734.1	chr11	3983879	3984079	-	1	NA	NA	NA	343	NM_016922	53897	Mm.103414	NM_016922	ENSMUSG00000049721	Gal3st1	Cst|Gcst	galactose-3-O-sulfotransferase 1	protein-coding	0.015000	0.572139	
mm_76954.1	chr8	106011312	106011512	-	1	NA	NA	NA	-66	NM_025518	66369	Mm.287500	NM_025518	ENSMUSG00000031901	Dus2	2310016K04Rik|Dus2l	dihydrouridine synthase 2	protein-coding	0.105000	0.621891	
mm_90918.1	chr10	12586212	12586412	-	1	NA	NA	NA	275423	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.005000	0.487562	
mm_32534.1	chr4	109000804	109001004	+	1	NA	NA	NA	99	NM_146150	230598	Mm.274950	NM_146150	ENSMUSG00000053510	Nrd1	2600011I06Rik|AI875733|NRD-C|Nrdc	nardilysin, N-arginine dibasic convertase, NRD convertase 1	protein-coding	0.080000	0.597015	
mm_170612.1	chr19	5849644	5849844	+	1	NA	NA	NA	-4264	NR_003513	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.010000	0.447761	
mm_41335.1	chr5	90495910	90496110	+	1	NA	NA	NA	5296	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.025000	0.467662	
mm_113672.1	chr13	42728894	42729094	+	1	NA	NA	NA	19413	NM_001005740	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.000000	0.363184	
mm_89802.1	chr10	102519480	102519680	+	1	NA	NA	NA	7358	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding	0.000000	0.248756	-7(TTTTTTATAGAA,+,0.00),16(TTCTATAAAAGT,-,0.00),43(GCCCATTAATAG,-,0.00),45(CCATTAATAGCA,+,0.00)
mm_142091.1	chr17	35834234	35834434	-	1	NA	NA	NA	3967	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.000000	0.487562	62(CCATTTATATCC,+,0.00)
mm_52862.1	chr6	122308570	122308770	+	1	NA	NA	NA	-340	NM_010749	17113	Mm.249225	NM_010749	ENSMUSG00000007458	M6pr	CD-MPR|Mpr46	mannose-6-phosphate receptor, cation dependent	protein-coding	0.050000	0.587065	
mm_122100.1	chr14	30915379	30915579	-	1	NA	NA	NA	8108	NM_008407	16426	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	0.015000	0.547264	
mm_157139.1	chrX	9459276	9459476	-	1	NA	NA	NA	9948	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.407960	
mm_113325.1	chr13	30786444	30786644	+	1	NA	NA	NA	37311	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.015000	0.537313	
mm_118705.1	chr14	22164818	22165018	+	1	NA	NA	NA	145206	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.000000	0.447761	-57(AGCTCTTAAAGC,-,0.00),-56(GCTCTTAAAGCC,+,0.00)
mm_105188.1	chr11	101984674	101984874	-	1	NA	NA	NA	17	NM_028207	72349	Mm.196295	NM_028207	ENSMUSG00000003518	Dusp3	2210015O03Rik|5031436O03Rik|T-DSP11|VHR	dual specificity phosphatase 3 (vaccinia virus phosphatase VH1-related)	protein-coding	0.120000	0.736318	
mm_44017.1	chr5	147341171	147341371	+	1	NA	NA	NA	-18831	NM_001039678	231903	Mm.291286	NM_001039678	ENSMUSG00000075543	Urad	EG231903|Prhoxnb	ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase	protein-coding	0.040000	0.552239	
mm_171318.1	chr3	96119234	96119434	-	1	NA	NA	NA	14807	NM_001025614	229603	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0.015000	0.442786	
mm_26296.1	chr3	142507819	142508019	+	1	NA	NA	NA	10985	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.025000	0.497512	
mm_132337.1	chr16	33829546	33829746	+	1	NA	NA	NA	-19	NM_010580	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.085000	0.701493	
mm_24650.1	chr3	94388198	94388398	+	1	NA	NA	NA	10866	NR_121656	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.015000	0.616915	
mm_109890.1	chr12	5943508	5943708	-	1	NA	NA	NA	567106	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	0.035000	0.442786	
mm_170123.1	chr17	39846842	39847042	+	1	NA	NA	NA	3945	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.045000	0.467662	
mm_8132.1	chr1	136233967	136234167	-	1	NA	NA	NA	213	NM_028872	67313	Mm.36763	NM_028872	ENSMUSG00000041605	5730559C18Rik	1700034M08Rik|4933426C09Rik|AI586180|D1Mgi54	RIKEN cDNA 5730559C18 gene	protein-coding	0.025000	0.557214	
mm_33913.1	chr4	136423962	136424162	+	1	NA	NA	NA	538	NM_001285483	15552	Mm.40573	NM_008309	ENSMUSG00000070687	Htr1d	5-HT-1D|5-HT1D|AI853647|Gpcr14|Htr1db	5-hydroxytryptamine (serotonin) receptor 1D	protein-coding	0.040000	0.597015	
mm_122261.1	chr14	34274186	34274386	-	1	NA	NA	NA	36217	NM_029389	75698	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	0.010000	0.412935	
mm_110079.1	chr12	24638953	24639153	-	1	NA	NA	NA	-12318	NM_178357	194655	Mm.9616	NM_178357	ENSMUSG00000020653	Klf11	9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3	Kruppel-like factor 11	protein-coding	0.045000	0.472637	-12(GCTTTTCTAGGG,+,0.00)
mm_420.1	chr1	34434999	34435199	+	1	NA	NA	NA	-1900	NR_039562	100628580		NR_039562	ENSMUSG00000092852	Mir5103	mir-5103|mmu-mir-5103|mu-mir-5103	microRNA 5103	ncRNA	0.070000	0.597015	
mm_37294.1	chr4	119189857	119190057	-	1	NA	NA	NA	54	NM_013848	27028	Mm.290753	NM_013848	ENSMUSG00000028644	Ermap	AA409279|AI666418	erythroblast membrane-associated protein	protein-coding	0.010000	0.542289	-70(GTTTATAGGGAC,+,0.00)
mm_110007.1	chr12	16221168	16221368	-	1	NA	NA	NA	368502	NM_015763	14245	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188	lipin 1	protein-coding	0.000000	0.437811	
mm_130597.1	chr15	99772437	99772637	-	1	NA	NA	NA	-22	NM_028015	71949	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	0.095000	0.751244	
mm_43898.1	chr5	144190315	144190515	+	1	NA	NA	NA	129	NM_010800	17341	Mm.386767	NM_010800	ENSMUSG00000052271	Bhlha15	1810009C13Rik|Bhlhb8|MIST-1|Mist1	basic helix-loop-helix family, member a15	protein-coding	0.035000	0.597015	
mm_76727.1	chr8	94973229	94973429	-	1	NA	NA	NA	-3780	NM_001198894	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.005000	0.557214	
mm_166194.1	chr5	36553194	36553394	-	1	NA	NA	NA	-22671	NM_001113364	100855	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.005000	0.552239	
mm_122713.1	chr14	52256236	52256436	-	1	NA	NA	NA	-18764	NM_201637	67772	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	0.000000	0.422886	-99(CTTTTTATGGTC,+,0.00)
mm_6206.1	chr1	66815779	66815979	-	1	NA	NA	NA	1716	NM_177645	68691	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.020000	0.442786	-5(CCCTTTAGAGCT,+,0.00)
mm_29767.1	chr3	127225838	127226038	-	1	NA	NA	NA	64633	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.055000	0.567164	
mm_62333.1	chr7	100493847	100494047	+	1	NA	NA	NA	589	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.010000	0.492537	
mm_80662.1	chr9	90064428	90064628	+	1	NA	NA	NA	10261	NM_001312649	13036	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.005000	0.542289	
mm_133080.1	chr16	59471720	59471920	+	1	NA	NA	NA	45	NM_025910	67014	Mm.289150	NM_025910	ENSMUSG00000022724	Mina	1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204	myc induced nuclear antigen	protein-coding	0.140000	0.731343	
mm_65220.1	chr7	19699501	19699701	-	1	NA	NA	NA	-413	NM_009696	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.015000	0.492537	
mm_152588.1	chr19	11604658	11604858	-	1	NA	NA	NA	46	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.010000	0.512438	
mm_80297.1	chr9	73113563	73113763	+	1	NA	NA	NA	194	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0.135000	0.701493	
mm_97223.1	chr11	75650423	75650623	+	1	NA	NA	NA	-986	NM_008659	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.005000	0.601990	
mm_142496.1	chr17	46030509	46030709	-	1	NA	NA	NA	1768	NM_001287058	22339	Mm.282184	NM_009505	ENSMUSG00000023951	Vegfa	Vegf|Vpf	vascular endothelial growth factor A	protein-coding	0.160000	0.810945	
mm_65908.1	chr7	30193707	30193907	-	1	NA	NA	NA	1241	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.040000	0.517413	
mm_131207.1	chr16	8680674	8680874	+	1	NA	NA	NA	4	NM_001324517	436336	Mm.357666	NM_001324517		Gm5767	EG436336	predicted gene 5767	protein-coding	0.015000	0.557214	
mm_83803.1	chr9	53247984	53248184	-	1	NA	NA	NA	28	NM_029936	77591	Mm.133560	NM_029936	ENSMUSG00000053289	Ddx10	4632415A01Rik|AI646054	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	protein-coding	0.100000	0.661692	
mm_71879.1	chr8	69811566	69811766	+	1	NA	NA	NA	2979	NM_198101	78816	Mm.324305	NM_198101	ENSMUSG00000036246	Gmip	5031419I10Rik	Gem-interacting protein	protein-coding	0.020000	0.567164	
mm_147727.1	chr18	61013984	61014184	-	1	NA	NA	NA	115	NM_201353	240332	Mm.39846	NM_201353	ENSMUSG00000052026	Slc6a7	AW455934|PROT	solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	protein-coding	0.105000	0.706468	
mm_28367.1	chr3	89904278	89904478	-	1	NA	NA	NA	8818	NM_001310676	16194	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.000000	0.412935	
mm_37822.1	chr4	131920605	131920805	-	1	NA	NA	NA	-676	NR_102393	545681	Mm.2478	NR_102393	ENSMUSG00000085667	Gm12992	OTTMUSG00000009742	predicted gene 12992	ncRNA	0.140000	0.805970	
mm_24445.1	chr3	90605858	90606058	+	1	NA	NA	NA	2188	NM_011311	20198	Mm.3925	NM_011311	ENSMUSG00000001020	S100a4	18A2|42a|Capl|FSp1|Mts1|PeL98|metastasin|pk9a	S100 calcium binding protein A4	protein-coding	0.010000	0.477612	-82(GCCCAGATAAGG,-,0.00)
mm_5422.1	chr1	34144477	34144677	-	1	NA	NA	NA	-15753	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.020000	0.631841	
mm_33235.1	chr4	127021225	127021425	+	1	NA	NA	NA	24	NM_023603	71514	Mm.257276	NM_023603	ENSMUSG00000028820	Sfpq	1110004P21Rik|2810416M14Rik|5730453G22Rik|9030402K04Rik|AU021830|D4Ertd314e|Gm12940|OTTMUSG00000009329|PSF|REP1	splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)	protein-coding	0.070000	0.572139	-37(TCCTATTTAAGA,-,0.00)
mm_89670.1	chr10	97506469	97506669	+	1	NA	NA	NA	24238	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.015000	0.432836	
mm_129709.1	chr15	81843652	81843852	-	1	NA	NA	NA	14574	NM_020507	57259	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.025000	0.348259	
mm_84969.1	chr9	85096507	85096707	-	1	NA	NA	NA	230517	NM_001160378	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.010000	0.338308	
mm_58102.1	chr6	137570722	137570922	-	1	NA	NA	NA	187	NM_001271595	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.030000	0.507463	-91(TTGTTTAAAAGA,-,0.00)
mm_6732.1	chr1	82810509	82810709	-	1	NA	NA	NA	-28851	NM_001310713	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.020000	0.572139	-34(TGCTATAAAAGG,-,0.00)
mm_42653.1	chr5	119133559	119133759	+	1	NA	NA	NA	25423	NR_040693	73477	Mm.410863	NR_040693	ENSMUSG00000100573	1700081H04Rik	-	RIKEN cDNA 1700081H04 gene	ncRNA	0.045000	0.537313	77(GTCTCTAAAGGG,-,0.00)
mm_47662.1	chr5	125849788	125849988	-	1	NA	NA	NA	317470	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0.025000	0.517413	
mm_34990.1	chr4	156027431	156027631	+	1	NA	NA	NA	1189	NM_021985	21936	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	0.005000	0.472637	
mm_113781.1	chr13	45410667	45410867	+	1	NA	NA	NA	21025	NM_153789	218203	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.030000	0.467662	
mm_151658.1	chr19	4125750	4125950	-	1	NA	NA	NA	8	NM_016666	11632	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.085000	0.691542	
mm_149173.1	chr19	9102376	9102576	+	1	NA	NA	NA	-14520	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.005000	0.457711	
mm_97946.1	chr11	83664222	83664422	+	1	NA	NA	NA	1738	NM_013652	20303	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.005000	0.532338	
mm_59774.1	chr7	28834391	28834591	+	1	NA	NA	NA	321	NM_010707	16857	Mm.210336	NM_010707		Lgals6	galectin-6	lectin, galactose binding, soluble 6	protein-coding	0.030000	0.592040	
mm_129402.1	chr15	78284295	78284495	-	1	NA	NA	NA	454	NR_106138	102466845		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0.000000	0.537313	
mm_169028.1	chr13	118362741	118362941	+	1	NA	NA	NA	24411	NM_021556	59054	Mm.143810	NM_021556	ENSMUSG00000021731	Mrps30	2610020A16Rik|AA968347|PAP|Pdcd9	mitochondrial ribosomal protein S30	protein-coding	0.005000	0.492537	
mm_149528.1	chr19	12460938	12461138	+	1	NA	NA	NA	259	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.005000	0.402985	
mm_14405.1	chr2	130171794	130171994	+	1	NA	NA	NA	7470	NM_009225	20638	Mm.88216	NM_009225	ENSMUSG00000027404	Snrpb	AL024368|AU018828|SM-B|SM11|SMB|SNRNP-B	small nuclear ribonucleoprotein B	protein-coding	0.005000	0.472637	
mm_78661.1	chr9	40575256	40575456	+	1	NA	NA	NA	-110608	NM_133733	71566	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.010000	0.467662	
mm_166684.1	chr6	99750211	99750411	+	1	NA	NA	NA	-23919	NM_001170419	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.005000	0.427861	
mm_16682.1	chr2	6876610	6876810	-	1	NA	NA	NA	-4675	NM_001347094	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.015000	0.482587	
mm_7410.1	chr1	119422069	119422269	-	1	NA	NA	NA	79	NM_008381	16324	Mm.3092	NM_008381	ENSMUSG00000037035	Inhbb	-	inhibin beta-B	protein-coding	0.110000	0.646766	
mm_106391.1	chr11	118650896	118651096	-	1	NA	NA	NA	110045	NM_001285438	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.025000	0.522388	
mm_70395.1	chr8	11071372	11071572	+	1	NA	NA	NA	-63042	NM_001081212	384783	Mm.407207	NM_001081212	ENSMUSG00000038894	Irs2	Irs-2	insulin receptor substrate 2	protein-coding	0.000000	0.502488	
mm_41535.1	chr5	92825813	92826013	+	1	NA	NA	NA	16531	NM_001077595	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.005000	0.442786	
mm_120837.1	chr14	75179484	75179684	+	1	NA	NA	NA	43159	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.030000	0.517413	
mm_141715.1	chr17	34027920	34028120	-	1	NA	NA	NA	35	NM_013543	14979	Mm.275452	NM_013543	ENSMUSG00000073422	H2-Ke6	D17H6S112E|H-2Ke6|Hsd17b8|Ke-6|Ke6|Ring2	H2-K region expressed gene 6	protein-coding	0.065000	0.701493	
mm_21494.1	chr2	163397829	163398029	-	1	NA	NA	NA	44	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	0.035000	0.601990	
mm_17435.1	chr2	27548001	27548201	-	1	NA	NA	NA	32954	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.010000	0.457711	
mm_110847.1	chr12	73046787	73046987	-	1	NA	NA	NA	-175	NM_009189	20471	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0.075000	0.681592	
mm_122318.1	chr14	36922316	36922516	-	1	NA	NA	NA	-2881	NM_001347503	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.000000	0.378109	
mm_89349.1	chr10	88146947	88147147	+	1	NA	NA	NA	-24	NM_028334	69736	Mm.222184	NM_027191	ENSMUSG00000035351	Nup37	2410003L22Rik|2810039M17Rik	nucleoporin 37	protein-coding	0.100000	0.676617	
mm_170032.1	chr17	22361267	22361467	-	1	NA	NA	NA	33	NM_176962	319615	Mm.442162	NM_176962	ENSMUSG00000033972	Zfp944	6330416L07Rik	zinc finger protein 944	protein-coding	0.080000	0.626866	
mm_117418.1	chr13	74333547	74333747	-	1	NA	NA	NA	-16321	NM_011051	18570	Mm.24254	NM_011051	ENSMUSG00000021576	Pdcd6	AV299538|Alg2|MA-3|PS2|alg-2	programmed cell death 6	protein-coding	0.000000	0.293532	
mm_139268.1	chr17	47862181	47862381	+	1	NA	NA	NA	-27590	NM_001109973	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.025000	0.492537	
mm_31696.1	chr4	62408718	62408918	+	1	NA	NA	NA	35	NM_027297	70052	Mm.30660	NM_027297	ENSMUSG00000066148	Prpf4	1600015H11Rik|AI874830|AW047464|bN189G18.1	pre-mRNA processing factor 4	protein-coding	0.100000	0.592040	
mm_73876.1	chr8	119277312	119277512	+	1	NA	NA	NA	-67126	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.010000	0.547264	
mm_103318.1	chr11	73176929	73177129	-	1	NA	NA	NA	13	NM_025318	66048	Mm.73608	NM_025318	ENSMUSG00000047260	Emc6	0610009E20Rik|0610025L18Rik|Tmem93	ER membrane protein complex subunit 6	protein-coding	0.100000	0.676617	
mm_9199.1	chr1	171226190	171226390	-	1	NA	NA	NA	1236	NM_013474	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.020000	0.532338	
mm_27454.1	chr3	52056317	52056517	-	1	NA	NA	NA	48589	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.010000	0.527363	
mm_161439.1	chr15	65976684	65976884	-	1	NA	NA	NA	20	NM_001145096	654498	Mm.364550	NM_001145096	ENSMUSG00000072511	Hhla1	F930104E18Rik	HERV-H LTR-associating 1	protein-coding	0.020000	0.457711	
mm_83974.1	chr9	57261610	57261810	-	1	NA	NA	NA	889	NM_028820	74211	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.065000	0.646766	
mm_9111.1	chr1	170111322	170111522	-	1	NA	NA	NA	-22478	NM_022563	18214	Mm.229249	NM_022563	ENSMUSG00000026674	Ddr2	AW495251|Ntrkr3|tyro10	discoidin domain receptor family, member 2	protein-coding	0.000000	0.402985	
mm_74815.1	chr8	22706444	22706644	-	1	NA	NA	NA	39	NM_010546	16150	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0.105000	0.691542	-63(CCCTTTAAGAGC,+,0.00),-63(CCCTTTAAGAGC,-,0.00),-62(CCTTTAAGAGCC,+,0.00)
mm_157780.1	chrX	73786946	73787146	-	1	NA	NA	NA	18	NM_001166480	20832	Mm.831	NM_009279	ENSMUSG00000002014	Ssr4	AW743063|C78062|Trap	signal sequence receptor, delta	protein-coding	0.100000	0.641791	
mm_95904.1	chr11	58203176	58203376	+	1	NA	NA	NA	3720	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.020000	0.457711	
mm_88327.1	chr10	75568543	75568743	+	1	NA	NA	NA	-19	NM_001305992	14598	Mm.4559	NM_008116	ENSMUSG00000006345	Ggt1	CD224|GGT|GGT 1|GGT-1|Ggtp|dwg	gamma-glutamyltransferase 1	protein-coding	0.025000	0.592040	-69(TACCTTTAAAGC,-,0.00),-68(ACCTTTAAAGCC,+,0.00),-67(CCTTTAAAGCCT,+,0.00)
mm_132720.1	chr16	43522484	43522684	+	1	NA	NA	NA	-102388	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.010000	0.368159	
mm_110461.1	chr12	51762003	51762203	-	1	NA	NA	NA	67433	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.015000	0.368159	
mm_156303.1	chrX	136837871	136838071	+	1	NA	NA	NA	15225	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.000000	0.383085	24(CAATATATAAGG,-,0.00)
mm_147447.1	chr18	46525941	46526141	-	1	NA	NA	NA	-70	NM_173423	240263	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.110000	0.741294	
mm_153617.1	chr19	43986272	43986472	-	1	NA	NA	NA	148	NM_030703	93721	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	0.035000	0.592040	
mm_56183.1	chr6	88446415	88446615	-	1	NA	NA	NA	24	NM_023060	65967	Mm.333237	NM_023060	ENSMUSG00000033216	Eefsec	Selb|sec	eukaryotic elongation factor, selenocysteine-tRNA-specific	protein-coding	0.125000	0.711443	
mm_15557.1	chr2	158502482	158502682	+	1	NA	NA	NA	-30	NM_145635	246747	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	0.005000	0.537313	
mm_55026.1	chr6	48841437	48841637	-	1	NA	NA	NA	54	NM_025326	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.015000	0.582090	
mm_82115.1	chr9	123461856	123462056	+	1	NA	NA	NA	-16745	NM_013860	29806	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.055000	0.482587	
mm_163999.1	chr14	65675794	65675994	+	1	NA	NA	NA	9491	NM_001168318	71145	Mm.83840	NM_028903	ENSMUSG00000022032	Scara5	4932433F15Rik|4933425F03Rik|AV278087|Tesr	scavenger receptor class A, member 5	protein-coding	0.005000	0.507463	-62(GCCTAGAAAAGA,-,0.00)
mm_123328.1	chr14	63008623	63008823	-	1	NA	NA	NA	-3048	NM_001039121	654458	Mm.390737	NM_001039121	ENSMUSG00000075572	Defb43	BD-43|EG654458|mBD-43	defensin beta 43	protein-coding	0.005000	0.492537	-35(CTCCATTAAAAG,-,0.00)
mm_7156.1	chr1	91458146	91458346	-	1	NA	NA	NA	1082	NM_011066	18627	Mm.482463	NM_011066	ENSMUSG00000055866	Per2	mKIAA0347|mPer2	period circadian clock 2	protein-coding	0.010000	0.527363	
mm_125881.1	chr15	75642374	75642574	+	1	NA	NA	NA	25790	NM_011759	22701	Mm.87210	NM_011759	ENSMUSG00000047003	Zfp41	CTfin92|Zfp-41	zinc finger protein 41	protein-coding	0.080000	0.636816	
mm_133480.1	chr16	90139906	90140106	+	1	NA	NA	NA	-2231	NR_033476	100038709	Mm.484070	NR_033476		Gm10789	ENSMUSG00000074924	predicted gene 10789	ncRNA	0.030000	0.557214	
mm_82807.1	chr9	29962998	29963198	-	1	NA	NA	NA	31	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.020000	0.482587	
mm_163630.1	chr13	58281077	58281277	+	1	NA	NA	NA	-6989	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.015000	0.477612	
mm_83270.1	chr9	42968098	42968298	-	1	NA	NA	NA	-23827	NM_175481	110637	Mm.370291	NM_175481	ENSMUSG00000032017	Grik4	6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1	glutamate receptor, ionotropic, kainate 4	protein-coding	0.010000	0.487562	
mm_64420.1	chr7	142576532	142576732	+	1	NA	NA	NA	515	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.015000	0.542289	
mm_11014.1	chr2	26583766	26583966	+	1	NA	NA	NA	2	NM_198725	353156	Mm.268933	NM_178444	ENSMUSG00000026921	Egfl7	VE-statin|Zneu1	EGF-like domain 7	protein-coding	0.040000	0.606965	-32(GAGCATAAAAAG,-,0.00),-30(GCATAAAAAGCC,+,0.00)
mm_42438.1	chr5	115429553	115429753	+	1	NA	NA	NA	-32	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.175000	0.845771	
mm_156210.1	chrX	134681381	134681581	+	1	NA	NA	NA	4981	NR_045454	77983	Mm.153204	NR_045454	ENSMUSG00000087024	B230119M05Rik	-	RIKEN cDNA B230119M05 gene	ncRNA	0.010000	0.412935	
mm_134681.1	chr16	22411786	22411986	-	1	NA	NA	NA	27684	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.015000	0.557214	
mm_128650.1	chr15	59648016	59648216	-	1	NA	NA	NA	-538	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.100000	0.691542	
mm_22415.1	chr2	181492884	181493084	-	1	NA	NA	NA	-222	NM_183181	241850	Mm.87455	NM_183181	ENSMUSG00000055882	Abhd16b	1700095H12	abhydrolase domain containing 16B	protein-coding	0.000000	0.482587	
mm_80374.1	chr9	75407967	75408167	+	1	NA	NA	NA	1292	NM_027418	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.030000	0.517413	61(TCTTTAAAACCG,+,0.00)
mm_105756.1	chr11	109473149	109473349	-	1	NA	NA	NA	-20	NM_134038	104681	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.145000	0.781095	
mm_61118.1	chr7	54835697	54835897	+	1	NA	NA	NA	552	NM_178705	233271	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	0.060000	0.606965	
mm_76830.1	chr8	104641601	104641801	-	1	NA	NA	NA	27	NM_026753	68523	Mm.279	NM_026753	ENSMUSG00000031879	Fam96b	1110019N10Rik	family with sequence similarity 96, member B	protein-coding	0.115000	0.676617	
mm_50655.1	chr6	51470396	51470596	+	1	NA	NA	NA	-120	NM_007624	12417	Mm.280968	NM_007624	ENSMUSG00000029836	Cbx3	HP1g|M32	chromobox 3	protein-coding	0.120000	0.746269	
mm_81921.1	chr9	120127686	120127886	+	1	NA	NA	NA	20	NM_011029	16785	Mm.4071	NM_011029	ENSMUSG00000032518	Rpsa	67kDa|67lr|AL022858|Lamr|Lamr1|Lamrl1|MLR|P40|P40-3|P40-8	ribosomal protein SA	protein-coding	0.110000	0.611940	-32(GGTTATTTAAGG,-,0.00)
mm_18919.1	chr2	76740717	76740917	-	1	NA	NA	NA	65502	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.035000	0.487562	
mm_7803.1	chr1	131525742	131525942	-	1	NA	NA	NA	1519	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.085000	0.646766	
mm_73541.1	chr8	108704172	108704372	+	1	NA	NA	NA	-10372	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.135000	0.696517	
mm_63207.1	chr7	126248270	126248470	+	1	NA	NA	NA	-132	NR_131046	76728	Mm.76920	NR_131046	ENSMUSG00000108676	1700123J17Rik	-	RIKEN cDNA 1700123J17 gene	ncRNA	0.010000	0.552239	
mm_138624.1	chr17	35841531	35841731	+	1	NA	NA	NA	133	NM_001010833	240087	Mm.218511	NM_001010833	ENSMUSG00000061607	Mdc1	6820401C03|AA413496|Nfbd1|mKIAA0170	mediator of DNA damage checkpoint 1	protein-coding	0.110000	0.631841	
mm_157439.1	chrX	38635022	38635222	-	1	NA	NA	NA	21	NM_021550	59048	Mm.441410	NM_021550	ENSMUSG00000048970	C1galt1c1	1500002I11Rik|AB030184|C1GalT2|C81205|Cosmc	C1GALT1-specific chaperone 1	protein-coding	0.090000	0.666667	
mm_163583.1	chr13	34627657	34627857	+	1	NA	NA	NA	24924	NM_025831	66895	Mm.28943	NM_025831	ENSMUSG00000021411	Pxdc1	1300014I06Rik	PX domain containing 1	protein-coding	0.010000	0.457711	
mm_9525.1	chr1	173766935	173767135	-	1	NA	NA	NA	-116	NM_008329	15951	Mm.261270	NM_008329	ENSMUSG00000073489	Ifi204	Ifi16|p204	interferon activated gene 204	protein-coding	0.005000	0.447761	
mm_67619.1	chr7	83995218	83995418	-	1	NA	NA	NA	91187	NM_030728	80982	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	0.000000	0.328358	68(TCTTATATGGCC,+,0.00)
mm_129000.1	chr15	74842503	74842703	-	1	NA	NA	NA	-960	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.005000	0.432836	
mm_168864.1	chr12	30911469	30911669	-	1	NA	NA	NA	43	NM_021330	11431	Mm.359831	NM_021330	ENSMUSG00000044573	Acp1	4632432E04Rik|AI427468|Acp-1|LMW-PTP|Lmptp	acid phosphatase 1, soluble	protein-coding	0.110000	0.646766	
mm_157076.1	chrX	8892847	8893047	-	1	NA	NA	NA	594	NR_045448	102941	Mm.41588	NM_175327	ENSMUSG00000052364	B630019K06Rik	AI843180	novel protein similar to F-box and leucine-rich repeat protein 17 (Fbxl17)	pseudo	0.140000	0.766169	
mm_18741.1	chr2	73023767	73023967	-	1	NA	NA	NA	-43421	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.020000	0.472637	59(CGCCTTAAAGAC,-,0.00)
mm_64063.1	chr7	140856422	140856622	+	1	NA	NA	NA	-139	NM_018742	54399	Mm.155696	NM_018742	ENSMUSG00000025484	Bet1l	2610021K23Rik|Gs15	Bet1 golgi vesicular membrane trafficking protein like	protein-coding	0.040000	0.572139	
mm_23269.1	chr3	51559675	51559875	+	1	NA	NA	NA	18	NR_033624	100039684	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	0.095000	0.671642	
mm_98901.1	chr11	98022616	98022816	+	1	NA	NA	NA	-89	NM_001282978	12295	Mm.41252	NM_031173	ENSMUSG00000020882	Cacnb1	CAB1|Cchb1|Cchlb1	calcium channel, voltage-dependent, beta 1 subunit	protein-coding	0.135000	0.756219	
mm_17011.1	chr2	18878358	18878558	-	1	NA	NA	NA	-76640	NR_131254	66774	Mm.87075	NR_131254	ENSMUSG00000097638	Carlr	4933439G12Rik|Carl	cardiac and apoptosis-related long non-coding RNA	ncRNA	0.005000	0.407960	
mm_5960.1	chr1	56971672	56971872	-	1	NA	NA	NA	303	NR_024325	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0.035000	0.527363	
mm_140186.1	chr17	81705033	81705233	+	1	NA	NA	NA	33254	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.477612	
mm_109526.1	chr12	111538096	111538296	+	1	NA	NA	NA	95	NM_173363	217869	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.100000	0.701493	
mm_34330.1	chr4	142089047	142089247	+	1	NA	NA	NA	-4843	NM_145402	214359	Mm.27587	NM_145402	ENSMUSG00000040616	Tmem51	BC003277	transmembrane protein 51	protein-coding	0.015000	0.427861	
mm_121728.1	chr14	17172796	17172996	-	1	NA	NA	NA	67338	NR_144493	100417973		NR_144493		Pou5f1-rs6	Gm18927|Oct4P3|Otf3-rs6|Otf3f	POU domain, class 5, transcription factor 1, related sequence 6	pseudo	0.075000	0.721393	
mm_57657.1	chr6	128486088	128486288	-	1	NA	NA	NA	40532	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.005000	0.398010	
mm_22780.1	chr3	21953088	21953288	+	1	NA	NA	NA	-123464	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.020000	0.497512	63(GCCTTTAAACTG,+,0.00)
mm_31877.1	chr4	80910752	80910952	+	1	NA	NA	NA	166	NM_026821	52829	Mm.273986	NM_026821	ENSMUSG00000048706	Lurap1l	1110029A09Rik|AV077978|AV175137|D4Bwg0951e|WI-13707|bM350F23.1	leucine rich adaptor protein 1-like	protein-coding	0.045000	0.427861	
mm_10721.1	chr2	22823422	22823622	+	1	NA	NA	NA	49195	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.010000	0.532338	
mm_62113.1	chr7	96603394	96603594	+	1	NA	NA	NA	198055	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA	0.005000	0.432836	
mm_156375.1	chrX	139671757	139671957	+	1	NA	NA	NA	-13139	NM_001081499	245638	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	0.020000	0.422886	
mm_101193.1	chr11	18885732	18885932	-	1	NA	NA	NA	133137	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.020000	0.492537	
mm_99532.1	chr11	103192554	103192754	+	1	NA	NA	NA	15894	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.055000	0.661692	
mm_136916.1	chr17	13230112	13230312	+	1	NA	NA	NA	-51	NM_001167913	236574		NM_001167913	ENSMUSG00000073457	Smok2b	Gm1847|Smok+129	sperm motility kinase 2B	protein-coding	0.005000	0.522388	
mm_32891.1	chr4	118964114	118964314	+	1	NA	NA	NA	2247	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.010000	0.502488	
mm_5135.1	chr1	9700303	9700503	-	1	NA	NA	NA	-194	NM_008651	17864	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	0.145000	0.766169	
mm_45028.1	chr5	38771793	38771993	-	1	NA	NA	NA	-87067	NM_001081144	100515	Mm.38277	NM_001081144	ENSMUSG00000046572	Zfp518b	6820424L24Rik|AA410078|AI661722|Znf518b	zinc finger protein 518B	protein-coding	0.000000	0.353234	
mm_48110.1	chr5	137109109	137109309	-	1	NA	NA	NA	6998	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.447761	
mm_147412.1	chr18	45559232	45559432	-	1	NA	NA	NA	-822	NM_080465	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.070000	0.631841	
mm_126919.1	chr15	91641831	91642031	+	1	NA	NA	NA	-31293	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.000000	0.487562	
mm_109352.1	chr12	109608775	109608975	+	1	NA	NA	NA	-2625	NR_029770	723846		NR_029770	ENSMUSG00000070101	Mir341	Mirn341|mmu-mir-341	microRNA 341	ncRNA	0.015000	0.517413	
mm_168147.1	chr10	35711782	35711982	-	1	NA	NA	NA	-794925	NM_001253355	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0.040000	0.447761	
mm_99444.1	chr11	102433224	102433424	+	1	NA	NA	NA	3002	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.010000	0.522388	
mm_118467.1	chr14	11553460	11553660	+	1	NA	NA	NA	7	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.095000	0.671642	
mm_122204.1	chr14	31781824	31782024	-	1	NA	NA	NA	48491	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.010000	0.398010	
mm_126212.1	chr15	78899699	78899899	+	1	NA	NA	NA	31	NM_009164	20401	Mm.4462	NM_009164	ENSMUSG00000022436	Sh3bp1	3BP-1	SH3-domain binding protein 1	protein-coding	0.105000	0.781095	
mm_119923.1	chr14	54963912	54964112	+	1	NA	NA	NA	2595	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.035000	0.557214	11(TCCTTTATGGTC,+,0.00)
mm_109805.1	chr12	3309844	3310044	-	1	NA	NA	NA	25	NM_016676	19325	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.130000	0.716418	
mm_12350.1	chr2	69749168	69749368	+	1	NA	NA	NA	26180	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.000000	0.293532	
mm_22404.1	chr2	181241934	181242134	-	1	NA	NA	NA	-7	NM_183162	229003	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.045000	0.631841	
mm_88006.1	chr10	67096395	67096595	+	1	NA	NA	NA	493	NM_001204915	28193	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.185000	0.810945	
mm_119492.1	chr14	47378035	47378235	+	1	NA	NA	NA	4275	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.025000	0.547264	
mm_119341.1	chr14	41072814	41073014	+	1	NA	NA	NA	3	NM_027094	69496	Mm.55734	NM_027094	ENSMUSG00000021790	Dydc1	1700029M23Rik	DPY30 domain containing 1	protein-coding	0.070000	0.572139	
mm_48768.1	chr5	148399781	148399981	-	1	NA	NA	NA	23	NM_007513	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.140000	0.751244	
mm_50489.1	chr6	48988701	48988901	+	1	NA	NA	NA	1940	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.015000	0.512438	
mm_39851.1	chr5	30913480	30913680	+	1	NA	NA	NA	-206	NM_133918	100952	Mm.286375	NM_133918	ENSMUSG00000029163	Emilin1	5830419M17Rik|AW229038|BB105748|EMILIN-1|gp115	elastin microfibril interfacer 1	protein-coding	0.005000	0.606965	
mm_153771.1	chr19	45660408	45660608	-	1	NA	NA	NA	-315	NM_013907	30838	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0.130000	0.736318	
mm_147936.1	chr18	66022398	66022598	-	1	NA	NA	NA	-19863	NM_001172062	70361	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	0.020000	0.562189	
mm_72739.1	chr8	85085341	85085541	+	1	NA	NA	NA	2172	NM_010764	17159	Mm.4219	NM_010764	ENSMUSG00000005142	Man2b1	AW107687|LAMAN	mannosidase 2, alpha B1	protein-coding	0.045000	0.552239	
mm_138564.1	chr17	35343081	35343281	+	1	NA	NA	NA	848	NM_010392	15013	Mm.427969	NM_010392	ENSMUSG00000091705	H2-Q2	BE136769|ENSMUSG00000079507|Gm11132|H-2Q2|gs14-2	histocompatibility 2, Q region locus 2	protein-coding	0.060000	0.611940	
mm_144292.1	chr18	12158762	12158962	+	1	NA	NA	NA	-9868	NM_029623	76482	Mm.196596	NM_029623	ENSMUSG00000024410	3110002H16Rik	2400010D15Rik|Mic-1|Mic1	RIKEN cDNA 3110002H16 gene	protein-coding	0.000000	0.467662	
mm_19943.1	chr2	116067300	116067500	-	1	NA	NA	NA	44	NM_001346047	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.025000	0.582090	
mm_813.1	chr1	45860510	45860710	+	1	NA	NA	NA	64984	NM_016917	53945	Mm.28756	NM_016917	ENSMUSG00000025993	Slc40a1	Dusg|Fpn1|IREG1|MTP|MTP1|Ol5|Pcm|Slc11a3|Slc39a1	solute carrier family 40 (iron-regulated transporter), member 1	protein-coding	0.010000	0.417910	42(CTCCAGAAAAGG,-,0.00)
mm_3252.1	chr1	136145132	136145332	+	1	NA	NA	NA	13831	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.030000	0.557214	
mm_99307.1	chr11	101376539	101376739	+	1	NA	NA	NA	8923	NM_008061	14377	Mm.18064	NM_008061	ENSMUSG00000078650	G6pc	AW107337|G6Pase|G6pt|Glc-6-Pase	glucose-6-phosphatase, catalytic	protein-coding	0.020000	0.537313	
mm_125378.1	chr15	40654899	40655099	+	1	NA	NA	NA	-43	NM_011766	22762	Mm.39496	NM_011766	ENSMUSG00000022306	Zfpm2	B330005D23Rik|FOG-2|FOG2	zinc finger protein, multitype 2	protein-coding	0.125000	0.736318	
mm_20390.1	chr2	129055714	129055914	-	1	NA	NA	NA	-10133	NM_027192	69737	Mm.33909	NM_027192	ENSMUSG00000027394	Ttl	2410003M22Rik|2700049H19Rik|AI848570	tubulin tyrosine ligase	protein-coding	0.020000	0.502488	
mm_48608.1	chr5	144357897	144358097	-	1	NA	NA	NA	74	NR_102374	100579137		NR_102372	ENSMUSG00000104600	Dmrt1i	Dmr	Dmrt1 interacting ncRNA	ncRNA	0.085000	0.636816	
mm_120560.1	chr14	68120768	68120968	+	1	NA	NA	NA	-2884	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.010000	0.492537	
mm_107795.1	chr12	62687700	62687900	+	1	NA	NA	NA	13	NR_131949	73309	Mm.276558	NR_131949		Spanxn4	1700047L15Rik	SPANX family, member N4	ncRNA	0.010000	0.432836	
mm_35687.1	chr4	44066953	44067153	-	1	NA	NA	NA	5620	NM_001190414	50798	Mm.256718	NM_015828	ENSMUSG00000028479	Gne	2310066H07Rik|DMRV|GLCNE|IBM2|NM|Uae1	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	protein-coding	0.020000	0.462687	
mm_127246.1	chr15	99601277	99601477	+	1	NA	NA	NA	-23	NM_175087	11831	Mm.202309	NM_175087	ENSMUSG00000043144	Aqp6	AI790337	aquaporin 6	protein-coding	0.020000	0.601990	
mm_169307.1	chr14	104715768	104715968	-	1	NA	NA	NA	76721	NR_015593	320249	Mm.320725	NR_015593		D130009I18Rik	-	RIKEN cDNA D130009I18 gene	ncRNA	0.085000	0.562189	-42(AACTTTAAATGG,-,0.00)
mm_164450.1	chr16	49913636	49913836	+	1	NA	NA	NA	58082	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.010000	0.442786	-94(CCTTTTCTGCCC,+,0.00),-7(TTTTTAATAGGG,+,0.00)
mm_112493.1	chr13	6559307	6559507	+	1	NA	NA	NA	11250	NM_145131	69617	Mm.41933	NM_145131	ENSMUSG00000021193	Pitrm1	2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104	pitrilysin metallepetidase 1	protein-coding	0.015000	0.472637	
mm_89579.1	chr10	95730193	95730393	+	1	NA	NA	NA	-166126	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.010000	0.457711	
mm_65599.1	chr7	27355861	27356061	-	1	NA	NA	NA	47	NM_138676	192192	Mm.21297	NM_138676	ENSMUSG00000089832	Shkbp1	B930062H15Rik|Sb1	Sh3kbp1 binding protein 1	protein-coding	0.080000	0.666667	
mm_36310.1	chr4	69758378	69758578	-	1	NA	NA	NA	651957	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.015000	0.447761	
mm_151688.1	chr19	4318603	4318803	-	1	NA	NA	NA	-12481	NM_001290818	110355	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.020000	0.562189	
mm_111348.1	chr12	86896923	86897123	-	1	NA	NA	NA	-12209	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.010000	0.527363	
mm_61030.1	chr7	49523755	49523955	+	1	NA	NA	NA	112980	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.010000	0.562189	
mm_27752.1	chr3	69596144	69596344	-	1	NA	NA	NA	2716	NM_020026	26879	Mm.153710	NM_020026	ENSMUSG00000043300	B3galnt1	B3galt3|b3GT3	UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1	protein-coding	0.010000	0.507463	
mm_167877.1	chrX	37804669	37804869	+	1	NA	NA	NA	-22286	NM_008955	19202	Mm.10105	NM_008955	ENSMUSG00000006200	Rhox6	AV213605|AW548842|Psx1	reproductive homeobox 6	protein-coding	0.015748	0.523438	
mm_92300.1	chr10	74863411	74863611	-	1	NA	NA	NA	-103720	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	0.035000	0.437811	
mm_28683.1	chr3	95357131	95357331	-	1	NA	NA	NA	-29	NM_001163642	84505	Mm.490259	NM_018877	ENSMUSG00000015697	Setdb1	AU022152|ESET|KMT1E|mKIAA0067	SET domain, bifurcated 1	protein-coding	0.075000	0.616915	
mm_26580.1	chr3	147398991	147399191	+	1	NA	NA	NA	546724	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.000000	0.283582	
mm_104937.1	chr11	100105542	100105742	-	1	NA	NA	NA	-16	NM_001174099	16673	Mm.306829	NM_008472	ENSMUSG00000020916	Krt36	HRa-1|K36|Krt1-22|Krt1-5|MHRa-1	keratin 36	protein-coding	0.015000	0.547264	-35(TTGTATATAAGC,-,0.00)
mm_54072.1	chr6	14754991	14755191	-	1	NA	NA	NA	183	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	0.025000	0.507463	
mm_102181.1	chr11	54028696	54028896	-	1	NA	NA	NA	-692	NM_001330304	30805	Mm.274590	NM_019687	ENSMUSG00000020334	Slc22a4	Octn1	solute carrier family 22 (organic cation transporter), member 4	protein-coding	0.045000	0.562189	43(GTCTCTATAAAG,-,0.00),45(CTCTATAAAGGC,+,0.00),45(CTCTATAAAGGC,-,0.00)
mm_113303.1	chr13	30749452	30749652	+	1	NA	NA	NA	319	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.025000	0.577114	
mm_43322.1	chr5	134986213	134986413	+	1	NA	NA	NA	99	NM_009902	12739	Mm.158662	NM_009902	ENSMUSG00000070473	Cldn3	AI182374|Cpetr2|mRVP1	claudin 3	protein-coding	0.075000	0.641791	
mm_83759.1	chr9	51956835	51957035	-	1	NA	NA	NA	6667	NM_007996	14148	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	0.000000	0.328358	
mm_164325.1	chr16	5608114	5608314	+	1	NA	NA	NA	-276579	NM_021477	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.005000	0.467662	
mm_68835.1	chr7	126285313	126285513	-	1	NA	NA	NA	12794	NM_145587	104175	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.020000	0.527363	
mm_4309.1	chr1	171844351	171844551	+	1	NA	NA	NA	4754	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.010000	0.452736	
mm_34373.1	chr4	144893397	144893597	+	1	NA	NA	NA	360	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.045000	0.507463	
mm_167845.1	chrX	5823989	5824189	+	1	NA	NA	NA	155022	NM_001085523	434725	Mm.457958	NM_001085523	ENSMUSG00000095814	Btbd35f7	Gm14374|OTTMUSG00000016453	BTB domain containing 35, family member 7	protein-coding	0.000000	0.353234	
mm_1475.1	chr1	70725722	70725922	+	1	NA	NA	NA	107	NM_001310658	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding	0.040000	0.562189	
mm_55121.1	chr6	50456030	50456230	-	1	NA	NA	NA	40	NM_001163645	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.065000	0.631841	
mm_99181.1	chr11	100860197	100860397	+	1	NA	NA	NA	-187	NM_001164062	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.090000	0.731343	
mm_138800.1	chr17	37995803	37996003	+	1	NA	NA	NA	-42881	NM_001011829	258094	Mm.377348	NM_001011829	ENSMUSG00000109376	Olfr761	MOR218-12|MOR218-5P|MOR218-6P|Olfr1552-ps1	olfactory receptor 761	protein-coding	0.015000	0.522388	
mm_62822.1	chr7	113419637	113419837	+	1	NA	NA	NA	-31164	NM_020623	19226	Mm.284168	NM_020623	ENSMUSG00000059077	Pth	Pthp	parathyroid hormone	protein-coding	0.005000	0.562189	-34(CACTATAAAAGG,-,0.00)
mm_19335.1	chr2	90580350	90580550	-	1	NA	NA	NA	197	NM_008982	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.170000	0.815920	
mm_69888.1	chr7	141637117	141637317	-	1	NA	NA	NA	16516	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.025000	0.527363	
mm_63210.1	chr7	126272350	126272550	+	1	NA	NA	NA	-169	NM_145587	104175	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.210000	0.840796	
mm_109100.1	chr12	105019401	105019601	+	1	NA	NA	NA	-9692	NM_172500	212073	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.030000	0.487562	
mm_36562.1	chr4	87227493	87227693	-	1	NA	NA	NA	370	NM_001110240	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	0.010000	0.497512	
mm_34560.1	chr4	149647797	149647997	+	1	NA	NA	NA	7670	NR_105990	102465983		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.025000	0.467662	
mm_121425.1	chr14	120303234	120303434	+	1	NA	NA	NA	27665	NM_175341	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding	0.010000	0.527363	
mm_30675.1	chr4	11165173	11165373	+	1	NA	NA	NA	8832	NM_021897	60599	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.000000	0.457711	
mm_41234.1	chr5	88758540	88758740	+	1	NA	NA	NA	-6373	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.005000	0.452736	
mm_26720.1	chr3	159495323	159495523	+	1	NA	NA	NA	-10	NM_001172092	76131	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	0.075000	0.587065	
mm_83532.1	chr9	46230245	46230445	-	1	NA	NA	NA	1715	NM_009692	11806	Mm.26743	NM_009692	ENSMUSG00000032083	Apoa1	Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I	apolipoprotein A-I	protein-coding	0.040000	0.592040	
mm_22477.1	chr3	5218931	5219131	+	1	NA	NA	NA	477	NM_030708	80892	Mm.41522	NM_030708	ENSMUSG00000025255	Zfhx4	A930021B15|C130041O22Rik|Zfh-4|Zfh4	zinc finger homeodomain 4	protein-coding	0.050000	0.472637	
mm_139452.1	chr17	55749938	55750138	+	1	NA	NA	NA	54	NM_139138	52614	Mm.210497	NM_139138	ENSMUSG00000032915	Adgre4	D17Ertd479e|Egf-tm7|Emr4|Fire|Gpr127	adhesion G protein-coupled receptor E4	protein-coding	0.005000	0.412935	62(GCTTTTATATTA,+,0.00)
mm_62214.1	chr7	97919881	97920081	+	1	NA	NA	NA	23	NM_177696	233537	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	0.055000	0.577114	
mm_39744.1	chr5	29569354	29569554	+	1	NA	NA	NA	212	NM_133907	100763	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	0.150000	0.771144	
mm_104441.1	chr11	94976254	94976454	-	1	NA	NA	NA	-27	NM_009161	20391	Mm.18709	NM_009161	ENSMUSG00000001508	Sgca	50DAG|Asg	sarcoglycan, alpha (dystrophin-associated glycoprotein)	protein-coding	0.015000	0.567164	
mm_149114.1	chr19	8966971	8967171	+	1	NA	NA	NA	30	NM_026007	67160	Mm.247762	NM_026007	ENSMUSG00000071644	Eef1g	2610301D06Rik|AA407312|EF1G	eukaryotic translation elongation factor 1 gamma	protein-coding	0.080000	0.597015	13(CCTTTTATGCCG,+,0.00)
mm_62049.1	chr7	92402602	92402802	+	1	NA	NA	NA	-158447	NM_025515	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.000000	0.338308	
mm_26781.1	chr3	9004618	9004818	-	1	NA	NA	NA	-203	NM_001025264	21985	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.050000	0.597015	
mm_46550.1	chr5	106614209	106614409	-	1	NA	NA	NA	82521	NM_026856	52397	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.010000	0.303483	61(GACTTTTAAAAC,-,0.00),63(CTTTTAAAACAG,+,0.00)
mm_134744.1	chr16	23097919	23098119	-	1	NA	NA	NA	-9378	NM_001347179	13682	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0.025000	0.487562	-32(CTTTAAATACCC,+,0.00)
mm_62702.1	chr7	110237640	110237840	+	1	NA	NA	NA	16037	NM_009302	20947	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.015000	0.472637	
mm_86.1	chr1	7088855	7089055	+	1	NA	NA	NA	35	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.115000	0.731343	
mm_154702.1	chrX	8271635	8271835	+	1	NA	NA	NA	354	NM_172479	209837	Mm.6055	NM_172479	ENSMUSG00000031170	Slc38a5	C81234|E330031E14|JM24|SN2	solute carrier family 38, member 5	protein-coding	0.010000	0.502488	
mm_108231.1	chr12	77238955	77239155	+	1	NA	NA	NA	316	NR_045554	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.135000	0.691542	
mm_173269.1	chrX	95956785	95956985	-	1	NA	NA	NA	89	NM_152822	76130	Mm.274318	NM_152822	ENSMUSG00000057421	Las1l	1810030A06Rik|5830482G23Rik	LAS1-like (S. cerevisiae)	protein-coding	0.070000	0.606965	
mm_96676.1	chr11	69411876	69412076	+	1	NA	NA	NA	1699	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.025000	0.527363	
mm_43113.1	chr5	124579020	124579220	+	1	NA	NA	NA	11	NM_145371	209354	Mm.28839	NM_145371	ENSMUSG00000029388	Eif2b1	D5Ertd406e|EIF2BA	eukaryotic translation initiation factor 2B, subunit 1 (alpha)	protein-coding	0.155000	0.691542	
mm_36570.1	chr4	87829422	87829622	-	1	NA	NA	NA	-23199	NM_029931	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.010000	0.467662	
mm_170534.1	chr1	93845524	93845724	-	1	NA	NA	NA	-15720	NM_199366	381334	Mm.482878	NM_199366	ENSMUSG00000094651	Gal3st2	GP3ST|Gm988	galactose-3-O-sulfotransferase 2	protein-coding	0.030000	0.477612	
mm_90707.1	chr10	130544678	130544878	+	1	NA	NA	NA	-47399	NM_001103366	625131	Mm.469844	NM_001103366	ENSMUSG00000091511	Vmn2r87	EG625131	vomeronasal 2, receptor 87	protein-coding	0.005000	0.373134	
mm_169670.1	chr15	62770774	62770974	-	1	NA	NA	NA	-551423	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.035000	0.547264	
mm_90724.1	chr10	5185436	5185636	-	1	NA	NA	NA	9171	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.025000	0.462687	
mm_86218.1	chr9	120068197	120068397	-	1	NA	NA	NA	-1	NM_009987	13051	Mm.44065	NM_009987	ENSMUSG00000052336	Cx3cr1	-	chemokine (C-X3-C motif) receptor 1	protein-coding	0.020000	0.507463	-4(CCTCATAGAGAG,+,0.00)
mm_169723.1	chr15	79542437	79542637	-	1	NA	NA	NA	4022	NM_199079	67040	Mm.29644	NM_152806	ENSMUSG00000055065	Ddx17	2610007K22Rik|A430025E01Rik|AI047725|C80929|Gm926|p72	DEAD (Asp-Glu-Ala-Asp) box polypeptide 17	protein-coding	0.020000	0.388060	
mm_33596.1	chr4	132568245	132568445	+	1	NA	NA	NA	4278	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.005000	0.447761	
mm_114335.1	chr13	60729283	60729483	+	1	NA	NA	NA	56981	NM_199148	218275	Mm.222427	NM_199148	ENSMUSG00000042243	BC051665	-	cDNA sequence BC051665	protein-coding	0.025000	0.517413	
mm_84007.1	chr9	57644139	57644339	-	1	NA	NA	NA	1414	NM_007783	12988	Mm.21974	NM_007783	ENSMUSG00000032312	Csk	AW212630|p50CSK	c-src tyrosine kinase	protein-coding	0.000000	0.467662	
mm_146308.1	chr18	80256241	80256441	+	1	NA	NA	NA	35	NM_001164423	66943	Mm.29247	NM_025861	ENSMUSG00000034006	Pqlc1	2310009N05Rik|4933425L21Rik|5730564E11Rik|C78974	PQ loop repeat containing 1	protein-coding	0.075000	0.646766	
mm_30012.1	chr3	135664997	135665197	-	1	NA	NA	NA	26450	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.000000	0.368159	
mm_126183.1	chr15	78615645	78615845	+	1	NA	NA	NA	18698	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.030000	0.572139	
mm_66050.1	chr7	30729385	30729585	-	1	NA	NA	NA	49	NM_027215	69804	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	0.125000	0.696517	
mm_18874.1	chr2	76240034	76240234	-	1	NA	NA	NA	98519	NM_001081033	241489	Mm.246613	NM_001081033	ENSMUSG00000075270	Pde11a	6330414F14Rik|A630086N24Rik|Gm350|PDE11A1	phosphodiesterase 11A	protein-coding	0.000000	0.343284	
mm_116889.1	chr13	55321851	55322051	-	1	NA	NA	NA	29	NM_009000	19336	Mm.220923	NM_009000	ENSMUSG00000034789	Rab24	6530406O07Rik	RAB24, member RAS oncogene family	protein-coding	0.130000	0.671642	
mm_148636.1	chr19	5474628	5474828	+	1	NA	NA	NA	-7	NM_001164352	58859	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	0.170000	0.800995	
mm_5706.1	chr1	43521748	43521948	-	1	NA	NA	NA	76097	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.005000	0.427861	-34(ATCTATAAAAAG,-,0.00)
mm_13506.1	chr2	109280736	109280936	+	1	NA	NA	NA	98	NM_139303	228421	Mm.274086	NM_139303	ENSMUSG00000027115	Kif18a	AU024633|B130001M12Rik|gcd2	kinesin family member 18A	protein-coding	0.060000	0.562189	
mm_139848.1	chr17	69383679	69383879	+	1	NA	NA	NA	-199	NM_009547	22666	Mm.29434	NM_009547	ENSMUSG00000049672	Zbtb14	ZF5|Zfp161|b2b1982Clo	zinc finger and BTB domain containing 14	protein-coding	0.205000	0.860697	
mm_37922.1	chr4	132794007	132794207	-	1	NA	NA	NA	2257	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.025000	0.547264	
mm_31699.1	chr4	62525520	62525720	+	1	NA	NA	NA	251	NM_177607	214106	Mm.73212	NM_177607	ENSMUSG00000058046	4933430I17Rik	bN189G18.7	RIKEN cDNA 4933430I17 gene	protein-coding	0.040000	0.393035	
mm_33313.1	chr4	129070411	129070611	+	1	NA	NA	NA	12240	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.010000	0.502488	
mm_162084.1	chrX	33956502	33956702	-	1	NA	NA	NA	204982	NM_001085552	668960		NM_001085552	ENSMUSG00000095716	Btbd35f10	Gm14351|OTTMUSG00000016411	BTB domain containing 35, family member 10	protein-coding	0.005000	0.492537	
mm_123261.1	chr14	61258389	61258589	-	1	NA	NA	NA	1	NM_011892	24053	Mm.72173	NM_011892	ENSMUSG00000035296	Sgcg	35kDa|5430420E18Rik|AI642964|gamma-SG	sarcoglycan, gamma (dystrophin-associated glycoprotein)	protein-coding	0.025000	0.492537	
mm_169515.1	chr1	4857727	4857927	+	1	NA	NA	NA	133	NM_011541	21399	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.120000	0.711443	
mm_163387.1	chr12	54559140	54559340	+	1	NA	NA	NA	86772	NR_035439	100316682		NR_035439	ENSMUSG00000106344	Mir1892	Mirn1892|mir-1892|mmu-mir-1892	microRNA 1892	ncRNA	0.005000	0.497512	
mm_131420.1	chr16	14708019	14708219	+	1	NA	NA	NA	2260	NM_011415	20583	Mm.4272	NM_011415	ENSMUSG00000022676	Snai2	Slug|Slugh|Snail2	snail family zinc finger 2	protein-coding	0.000000	0.412935	-55(TCCTATAAAAAG,-,0.00)
mm_97562.1	chr11	78935328	78935528	+	1	NA	NA	NA	10137	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.020000	0.537313	
mm_82024.1	chr9	121777618	121777818	+	1	NA	NA	NA	111	NM_028202	72330	Mm.45734	NM_028202	ENSMUSG00000074001	Klhl40	2310024D23Rik|Kbtbd5	kelch-like 40	protein-coding	0.030000	0.606965	-59(CTCTATATATAG,-,0.00),-57(CTATATATAGCC,+,0.00)
mm_19295.1	chr2	90460607	90460807	-	1	NA	NA	NA	18467	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.015000	0.427861	
mm_1166.1	chr1	60910988	60911188	+	1	NA	NA	NA	2063	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.000000	0.402985	
mm_141530.1	chr17	31844413	31844613	-	1	NA	NA	NA	11279	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.015000	0.368159	58(GCCTATTTAAAG,-,0.00),60(CTATTTAAAGAC,+,0.00)
mm_152638.1	chr19	12501854	12502054	-	1	NA	NA	NA	42	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.050000	0.567164	
mm_60439.1	chr7	44476884	44477084	+	1	NA	NA	NA	6637	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.398010	
mm_96459.1	chr11	67586553	67586753	+	1	NA	NA	NA	153	NM_001109657	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.010000	0.562189	
mm_147660.1	chr18	60596667	60596867	-	1	NA	NA	NA	-5051	NM_133363	170947	Mm.159257	NM_133363	ENSMUSG00000049173	Myoz3	4833419K08Rik|Fatz-3	myozenin 3	protein-coding	0.015000	0.398010	-59(GGCTTTAAAAAC,-,0.00)
mm_155741.1	chrX	96166524	96166724	+	1	NA	NA	NA	70579	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.030000	0.537313	
mm_18508.1	chr2	62617160	62617360	-	1	NA	NA	NA	28995	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.015000	0.427861	
mm_163869.1	chr14	19418995	19419195	+	1	NA	NA	NA	183492	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.010000	0.333333	
mm_150561.1	chr19	39510722	39510922	+	1	NA	NA	NA	0	NM_010003	13098	Mm.42101	NM_010003	ENSMUSG00000025003	Cyp2c39	CYPIIC39	cytochrome P450, family 2, subfamily c, polypeptide 39	protein-coding	0.005000	0.398010	-6(TGCTATAAAAGG,-,0.00)
mm_158677.1	chrX	158043315	158043515	-	1	NA	NA	NA	-218	NM_177751	245684	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding	0.175000	0.825871	
mm_87082.1	chr10	29313460	29313660	+	1	NA	NA	NA	60	NM_025855	52665	Mm.28930	NM_025855	ENSMUSG00000019883	Echdc1	1700028A24Rik|AI314462|AI930038|D10Ertd667e|MMCD	enoyl Coenzyme A hydratase domain containing 1	protein-coding	0.110000	0.671642	
mm_691.1	chr1	40579980	40580180	+	1	NA	NA	NA	-147	NM_177084	110895	Mm.108602	NM_177084	ENSMUSG00000026065	Slc9a4	AW990558|D730009J23Rik|NHE4	solute carrier family 9 (sodium/hydrogen exchanger), member 4	protein-coding	0.020000	0.462687	89(TTCCTTATAAAG,-,0.00)
mm_88832.1	chr10	80806305	80806505	+	1	NA	NA	NA	1157	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.030000	0.606965	
mm_146586.1	chr18	8137955	8138155	-	1	NA	NA	NA	268858	NM_153085	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.025000	0.442786	
mm_97033.1	chr11	72267144	72267344	+	1	NA	NA	NA	400	NR_045922	73366	Mm.396157	NR_045922	ENSMUSG00000086951	1700051A21Rik	-	RIKEN cDNA 1700051A21 gene	ncRNA	0.100000	0.626866	
mm_76682.1	chr8	94012746	94012946	-	1	NA	NA	NA	-206	NM_011787	23802	Mm.34641	NM_011787	ENSMUSG00000031751	Amfr	gp78	autocrine motility factor receptor	protein-coding	0.090000	0.746269	
mm_48029.1	chr5	136246430	136246630	-	1	NA	NA	NA	-1590	NM_018825	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.005000	0.482587	
mm_132773.1	chr16	44771701	44771901	+	1	NA	NA	NA	6065	NM_021325	57781	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.005000	0.412935	
mm_118448.1	chr14	8214104	8214304	+	1	NA	NA	NA	123	NM_027782	71393	Mm.292712	NM_027782	ENSMUSG00000021752	Kctd6	5430433B02Rik|AU044285	potassium channel tetramerisation domain containing 6	protein-coding	0.210000	0.825871	
mm_102516.1	chr11	60811058	60811258	-	1	NA	NA	NA	107	NM_009171	20425	Mm.364956	NM_009171	ENSMUSG00000020534	Shmt1	AI324848|AI385541|C81125|Shmt|mshmt|mshmt1|mshmt2	serine hydroxymethyltransferase 1 (soluble)	protein-coding	0.080000	0.661692	
mm_100071.1	chr11	115420051	115420251	+	1	NA	NA	NA	25	NM_183285	70382	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	0.145000	0.810945	
mm_4542.1	chr1	176902793	176902993	+	1	NA	NA	NA	-66760	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0.000000	0.258706	
mm_42662.1	chr5	119670700	119670900	+	1	NA	NA	NA	-62	NM_198052	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.090000	0.601990	
mm_139814.1	chr17	66518686	66518886	+	1	NA	NA	NA	884	NM_024448	19328	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0.040000	0.462687	
mm_34144.1	chr4	139338117	139338317	+	1	NA	NA	NA	14359	NM_001290810	69902	Mm.27871	NM_023536	ENSMUSG00000028741	Mrto4	2610012O22Rik|Mg684|Mrt4	mRNA turnover 4, ribosome maturation factor	protein-coding	0.095000	0.661692	
mm_81014.1	chr9	104073967	104074167	+	1	NA	NA	NA	10364	NM_175324	102632	Mm.41274	NM_175324	ENSMUSG00000090150	Acad11	5730439E10Rik|AI987948	acyl-Coenzyme A dehydrogenase family, member 11	protein-coding	0.010000	0.323383	
mm_137919.1	chr17	32452625	32452825	+	1	NA	NA	NA	2	NM_177307	320997	Mm.130900	NM_177307	ENSMUSG00000061126	Cyp4f39	4732474A20Rik	cytochrome P450, family 4, subfamily f, polypeptide 39	protein-coding	0.060000	0.646766	-6(AGGTTTAAAGGG,-,0.00)
mm_24643.1	chr3	94377416	94377616	+	1	NA	NA	NA	84	NR_121656	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.005000	0.582090	
mm_59504.1	chr7	27560360	27560560	+	1	NA	NA	NA	-16	NM_001122767	66367	Mm.29831	NM_175107	ENSMUSG00000049643	2310022A10Rik	-	RIKEN cDNA 2310022A10 gene	protein-coding	0.015000	0.616915	
mm_120859.1	chr14	75229217	75229417	+	1	NA	NA	NA	-12970	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.015000	0.542289	
mm_140382.1	chr17	87116832	87117032	+	1	NA	NA	NA	9253	NM_019654	56468	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0.015000	0.393035	-64(TAGTATTAAAGG,-,0.00)
mm_106957.1	chr12	8921535	8921735	+	1	NA	NA	NA	328	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.080000	0.606965	
mm_77366.1	chr8	119810094	119810294	-	1	NA	NA	NA	30385	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.035000	0.661692	
mm_94280.1	chr11	3963904	3964104	+	1	NA	NA	NA	29	NM_022889	64934	Mm.28659	NM_022889	ENSMUSG00000020430	Pes1	-	pescadillo ribosomal biogenesis factor 1	protein-coding	0.040000	0.567164	
mm_19649.1	chr2	102866583	102866783	-	1	NA	NA	NA	34982	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.000000	0.412935	
mm_77313.1	chr8	117692167	117692367	-	1	NA	NA	NA	-9679	NM_008290	15486	Mm.276466	NM_008290	ENSMUSG00000031844	Hsd17b2	AI194836|AI194967|AI255511	hydroxysteroid (17-beta) dehydrogenase 2	protein-coding	0.010000	0.502488	
mm_133594.1	chr16	91462046	91462246	+	1	NA	NA	NA	-2958	NR_077219	100503120	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.020000	0.467662	
mm_93462.1	chr10	110856586	110856786	-	1	NA	NA	NA	39821	NR_045979	75630	Mm.392786	NR_045979	ENSMUSG00000101801	1700020G17Rik	4930480D05Rik	RIKEN cDNA 1700020G17 gene	ncRNA	0.010000	0.442786	
mm_132496.1	chr16	36946565	36946765	+	1	NA	NA	NA	11682	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.025000	0.512438	
mm_158007.1	chrX	95444671	95444871	-	1	NA	NA	NA	69	NM_175179	72345	Mm.182867	NM_175179	ENSMUSG00000050332	Amer1	2810002O09Rik|AW492303|Fam123b|Wtx	APC membrane recruitment 1	protein-coding	0.055000	0.621891	
mm_25203.1	chr3	103803025	103803225	+	1	NA	NA	NA	-4	NR_040412	100503157	Mm.445554	NR_040412	ENSMUSG00000084997	Gm15471	OTTMUSG00000022448	predicted gene 15471	ncRNA	0.025000	0.542289	
mm_53433.1	chr6	134079513	134079713	+	1	NA	NA	NA	43913	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.005000	0.308458	
mm_141234.1	chr17	27436661	27436861	-	1	NA	NA	NA	66772	NM_001013385	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.005000	0.422886	
mm_36590.1	chr4	88438029	88438229	-	1	NA	NA	NA	797	NM_025760	66775	Mm.386788	NM_025760	ENSMUSG00000028497	Hacd4	4933428I03Rik|Hcad4|Ptplad2	3-hydroxyacyl-CoA dehydratase 4	protein-coding	0.005000	0.437811	
mm_59671.1	chr7	28379271	28379471	+	1	NA	NA	NA	-143	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.075000	0.656716	-94(CCTTTTATGGGG,+,0.00)
mm_40676.1	chr5	65537112	65537312	+	1	NA	NA	NA	-33	NM_016786	53323	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.170000	0.791045	
mm_88667.1	chr10	80016874	80017074	+	1	NA	NA	NA	59	NM_001347074	70719	Mm.243954	NM_027521	ENSMUSG00000035697	Hmha1	6330406L22Rik|AW539505|Ha-1	histocompatibility (minor) HA-1	protein-coding	0.045000	0.631841	
mm_138383.1	chr17	35046820	35047020	+	1	NA	NA	NA	-175	NM_001146215	17687	Mm.24192	NM_013600	ENSMUSG00000007035	Msh5	Mut5	mutS homolog 5	protein-coding	0.070000	0.601990	
mm_39203.1	chr4	156031527	156031727	-	1	NA	NA	NA	5285	NM_021985	21936	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	0.020000	0.592040	
mm_158568.1	chrX	150559681	150559881	-	1	NA	NA	NA	-12336	NR_106147	102465782		NR_106147	ENSMUSG00000099172	Mir3620	Gm27984|mmu-mir-3620	microRNA 3620	ncRNA	0.010000	0.353234	
mm_89867.1	chr10	108177201	108177401	+	1	NA	NA	NA	14901	NM_027892	17931	Mm.422959	NM_027892	ENSMUSG00000019907	Ppp1r12a	1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|Mypt1	protein phosphatase 1, regulatory (inhibitor) subunit 12A	protein-coding	0.005000	0.373134	
mm_86611.1	chr10	13964762	13964962	+	1	NA	NA	NA	-1517	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.090000	0.716418	
mm_71971.1	chr8	70539598	70539798	+	1	NA	NA	NA	23	NM_007924	13716	Mm.271973	NM_007924	ENSMUSG00000070002	Ell	Ell1|Men	elongation factor RNA polymerase II	protein-coding	0.125000	0.696517	
mm_143678.1	chr17	80055274	80055474	-	1	NA	NA	NA	6894	NM_144802	72692	Mm.64579	NM_144802	ENSMUSG00000024095	Hnrnpll	2510028H02Rik|2810036L13Rik|AI256697|AI852082|Hnrpll	heterogeneous nuclear ribonucleoprotein L-like	protein-coding	0.000000	0.308458	
mm_22272.1	chr2	178546331	178546531	-	1	NA	NA	NA	115916	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.015000	0.487562	
mm_148193.1	chr18	79033264	79033464	-	1	NA	NA	NA	76027	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.015000	0.407960	
mm_102190.1	chr11	54249542	54249742	-	1	NA	NA	NA	257	NM_009969	12981	Mm.4922	NM_009969	ENSMUSG00000018916	Csf2	Csfgm|GMCSF|Gm-CSf|MGI-IGM	colony stimulating factor 2 (granulocyte-macrophage)	protein-coding	0.010000	0.517413	-34(GTGTATATAAGA,-,0.00)
mm_167505.1	chr9	13302814	13303014	+	1	NA	NA	NA	55958	NM_025534	66396	Mm.290620	NM_025534	ENSMUSG00000079084	Ccdc82	2310043N13Rik	coiled-coil domain containing 82	protein-coding	0.010000	0.293532	
mm_98549.1	chr11	95040629	95040829	+	1	NA	NA	NA	642	NM_133667	18604	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	0.015000	0.582090	
mm_154136.1	chr19	57358375	57358575	-	1	NA	NA	NA	2424	NR_040316	320879	Mm.375089	NR_040316	ENSMUSG00000097785	B230217O12Rik	-	RIKEN cDNA B230217O12 gene	ncRNA	0.015000	0.557214	
mm_124134.1	chr14	84758602	84758802	-	1	NA	NA	NA	-282278	NR_015539	319903	Mm.440481	NR_015539		9630013A20Rik	-	RIKEN cDNA 9630013A20 gene	ncRNA	0.010000	0.492537	
mm_11299.1	chr2	30171433	30171633	+	1	NA	NA	NA	9	NM_007931	13804	Mm.474473	NM_007931	ENSMUSG00000015337	Endog	-	endonuclease G	protein-coding	0.100000	0.681592	-55(CGTCTTAAAAGG,-,0.00),-53(TCTTAAAAGGGC,+,0.00)
mm_12630.1	chr2	74704823	74705023	+	1	NA	NA	NA	308	NM_001290731	15437	Mm.280673	NM_008276	ENSMUSG00000027102	Hoxd8	4921540P06Rik|AI047735|Hox-4.3|Hox-5.4	homeobox D8	protein-coding	0.175000	0.810945	
mm_39639.1	chr5	24577639	24577839	+	1	NA	NA	NA	-272	NM_001190443	27407	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	0.025000	0.522388	
mm_81535.1	chr9	110131894	110132094	+	1	NA	NA	NA	-30	NM_009211	20588	Mm.85410	NM_009211	ENSMUSG00000032481	Smarcc1	AI115498|BAF155|Rsc8|SRG3|msp3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1	protein-coding	0.140000	0.726368	
mm_134258.1	chr16	13730910	13731110	-	1	NA	NA	NA	-526	NM_011987	26565	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	0.040000	0.547264	
mm_138039.1	chr17	33920190	33920390	+	1	NA	NA	NA	812	NM_009318	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.090000	0.641791	
mm_170756.1	chr2	157034855	157035055	+	1	NA	NA	NA	-27880	NM_025853	66934	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0.020000	0.502488	
mm_75736.1	chr8	69625431	69625631	-	1	NA	NA	NA	17	NM_172754	234362	Mm.458487	NM_172754	ENSMUSG00000060427	Zfp868	AI449175|AW108241|C530032E20|mszf62	zinc finger protein 868	protein-coding	0.045000	0.567164	
mm_169647.1	chr15	52544477	52544677	-	1	NA	NA	NA	-167868	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.005000	0.417910	
mm_93236.1	chr10	95413497	95413697	-	1	NA	NA	NA	1686	NM_001168657	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.000000	0.283582	
mm_32086.1	chr4	98436768	98436968	+	1	NA	NA	NA	41042	NM_172696	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.015000	0.487562	
mm_28991.1	chr3	101290647	101290847	-	1	NA	NA	NA	-2808	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.045000	0.537313	
mm_62606.1	chr7	105742452	105742652	+	1	NA	NA	NA	1786	NM_020024	24075	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	0.010000	0.462687	
mm_112348.1	chr12	118198834	118199034	-	1	NA	NA	NA	109	NM_010060	13411	Mm.390540	NM_010060	ENSMUSG00000018581	Dnah11	Dnahc11|b2b1203Clo|b2b1279Clo|b2b1289Clo|b2b1727Clo|b2b598Clo|iv|lrd	dynein, axonemal, heavy chain 11	protein-coding	0.085000	0.666667	
mm_67063.1	chr7	67645134	67645334	-	1	NA	NA	NA	2	NM_175124	67867	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	0.080000	0.681592	
mm_128707.1	chr15	63808639	63808839	-	1	NA	NA	NA	0	NM_031378	83492	Mm.335619	NM_031378	ENSMUSG00000079025	Gsdmc	Gsdmc1|Mlze	gasdermin C	protein-coding	0.005000	0.512438	
mm_60187.1	chr7	43267575	43267775	+	1	NA	NA	NA	45586	NM_027264	69930	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0.025000	0.517413	
mm_3918.1	chr1	162218754	162218954	+	1	NA	NA	NA	1040	NR_029810	723821		NR_029810	ENSMUSG00000070126	Mir199a-2	Mirn199a-2|mir-199a-2	microRNA 199a-2	ncRNA	0.010000	0.353234	
mm_73496.1	chr8	107153640	107153840	+	1	NA	NA	NA	3079	NM_025558	66427	Mm.20242	NM_025558	ENSMUSG00000031924	Cyb5b	1810044O22Rik|AU015618|Cyb5m	cytochrome b5 type B	protein-coding	0.005000	0.422886	
mm_68675.1	chr7	118976715	118976915	-	1	NA	NA	NA	18396	NM_022420	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.000000	0.517413	
mm_49195.1	chr6	15186808	15187008	+	1	NA	NA	NA	1402	NM_001286607	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.025000	0.472637	
mm_6611.1	chr1	75479065	75479265	-	1	NA	NA	NA	306	NM_001001565	74241	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0.135000	0.791045	
mm_32735.1	chr4	116596588	116596788	+	1	NA	NA	NA	-42	NM_001037916	622665	Mm.388905	NM_001037916	ENSMUSG00000034035	Ccdc17	-	coiled-coil domain containing 17	protein-coding	0.020000	0.492537	76(GTGTCTATAAGA,-,0.00),78(GTCTATAAGAGA,-,0.00)
mm_7880.1	chr1	133019388	133019588	-	1	NA	NA	NA	5928	NR_126506	17248	Mm.426531	NM_008575	ENSMUSG00000054387	Mdm4	4933417N07Rik|AA414968|AL023055|AU018793|AU021806|C85810|Mdmx	transformed mouse 3T3 cell double minute 4	protein-coding	0.000000	0.412935	
mm_93022.1	chr10	87915238	87915438	-	1	NA	NA	NA	-51333	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.035000	0.502488	
mm_64429.1	chr7	142577685	142577885	+	1	NA	NA	NA	361	NR_130974	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.040000	0.597015	
mm_160087.1	chr7	14622604	14622804	-	1	NA	NA	NA	-226	NR_045120	100417675	Mm.372763	NR_045119	ENSMUSG00000041596	Nlrp5-ps	Gm18756	NLR family, pyrin domain containing 5, pseudogene	pseudo	0.195000	0.835821	
mm_109624.1	chr12	112766648	112766848	+	1	NA	NA	NA	6093	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.010000	0.507463	
mm_44676.1	chr5	29795117	29795317	-	1	NA	NA	NA	6206	NR_105781	102465962		NR_105781	ENSMUSG00000098448	Mir6362	Gm27812|mmu-mir-6362	microRNA 6362	ncRNA	0.030000	0.487562	
mm_2344.1	chr1	92865094	92865294	+	1	NA	NA	NA	14816	NR_029559	387167		NR_029559	ENSMUSG00000065470	Mir149	Mirn149|mir-149|mmu-mir-149	microRNA 149	ncRNA	0.025000	0.597015	
mm_38659.1	chr4	144162549	144162749	-	1	NA	NA	NA	2	NM_201258	100012	Mm.28722	NM_201258	ENSMUSG00000050810	Oog3	AA617276|C86881	oogenesin 3	protein-coding	0.000000	0.437811	
mm_50128.1	chr6	41541797	41541997	+	1	NA	NA	NA	20121	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.000000	0.502488	-34(CTCTATAAATGC,-,0.00)
mm_13498.1	chr2	107290482	107290682	+	1	NA	NA	NA	-7	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding	0.075000	0.711443	
mm_34060.1	chr4	138440473	138440673	+	1	NA	NA	NA	5901	NM_026689	68350	Mm.103413	NM_026689	ENSMUSG00000041241	Mul1	0610009K11Rik|AV000801|Gide	mitochondrial ubiquitin ligase activator of NFKB 1	protein-coding	0.045000	0.557214	
mm_3005.1	chr1	133309704	133309904	+	1	NA	NA	NA	-19	NM_026680	68338	Mm.247935	NM_026680	ENSMUSG00000098306	Golt1a	0610012C01Rik|Kiss1|metastatin	golgi transport 1A	protein-coding	0.020000	0.567164	
mm_168559.1	chr1	167340269	167340469	-	1	NA	NA	NA	-9622	NM_019993	56752	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.140000	0.696517	
mm_148865.1	chr19	6413018	6413218	+	1	NA	NA	NA	-5620	NM_001205235	18190	Mm.329616	NM_020253	ENSMUSG00000033768	Nrxn2	6430591O13Rik|mKIAA0921	neurexin II	protein-coding	0.060000	0.636816	
mm_2215.1	chr1	89783366	89783566	+	1	NA	NA	NA	-99574	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.015000	0.482587	
mm_115906.1	chr13	23430651	23430851	-	1	NA	NA	NA	266	NR_015492	320842	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0.025000	0.442786	
mm_71981.1	chr8	70594959	70595159	+	1	NA	NA	NA	578	NM_023627	71780	Mm.29357	NM_023627	ENSMUSG00000019139	Isyna1	1300017C10Rik|AU018670	myo-inositol 1-phosphate synthase A1	protein-coding	0.060000	0.656716	
mm_60428.1	chr7	44476609	44476809	+	1	NA	NA	NA	6362	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.412935	
mm_28816.1	chr3	96262222	96262422	-	1	NA	NA	NA	995	NM_033596	97122	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0.045000	0.557214	
mm_173336.1	chrY	90811199	90811399	+	1	NA	NA	NA	25857	NM_133362	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.005000	0.477612	
mm_65137.1	chr7	19562289	19562489	-	1	NA	NA	NA	9	NM_199149	232947	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	0.095000	0.547264	
mm_82744.1	chr9	26802503	26802703	-	1	NA	NA	NA	3814	NM_153803	244757	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0.005000	0.422886	-86(GAATATTAAAGC,-,0.00)
mm_113789.1	chr13	45935944	45936144	+	1	NA	NA	NA	28947	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.025000	0.522388	
mm_53133.1	chr6	125191727	125191927	+	1	NA	NA	NA	-241	NM_146171	68298	Mm.257590	NM_146171	ENSMUSG00000038252	Ncapd2	2810406C15Rik|2810465G24Rik|CAP-D2|CNAP1|mKIAA0159	non-SMC condensin I complex, subunit D2	protein-coding	0.090000	0.656716	
mm_59283.1	chr7	24917822	24918022	+	1	NA	NA	NA	13576	NM_001130152	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.025000	0.636816	
mm_133913.1	chr16	97557654	97557854	+	1	NA	NA	NA	21671	NM_013606	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.005000	0.442786	
mm_13702.1	chr2	117139285	117139485	+	1	NA	NA	NA	18314	NM_033524	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.005000	0.328358	
mm_84857.1	chr9	78527368	78527568	-	1	NA	NA	NA	-45744	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.050000	0.557214	-33(GCATTTAAAAGG,-,0.00)
mm_97448.1	chr11	78189019	78189219	+	1	NA	NA	NA	371	NM_033475	19376	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	0.105000	0.741294	
mm_29926.1	chr3	131490955	131491155	-	1	NA	NA	NA	-73713	NM_001289479	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.030000	0.522388	
mm_126910.1	chr15	90224355	90224555	+	1	NA	NA	NA	95	NR_106106	102466838		NR_106106	ENSMUSG00000099319	Mir7648	Gm27736|mmu-mir-7648	microRNA 7648	ncRNA	0.115000	0.726368	
mm_159073.1	chr2	25500549	25500749	-	1	NA	NA	NA	-129	NM_013908	30839	Mm.29170	NM_013908	ENSMUSG00000015095	Fbxw5	AI159739|Fbw5	F-box and WD-40 domain protein 5	protein-coding	0.060000	0.582090	
mm_19617.1	chr2	102812289	102812489	-	1	NA	NA	NA	89276	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.005000	0.447761	
mm_130204.1	chr15	95528001	95528201	-	1	NA	NA	NA	151	NM_001289653	54003	Mm.3959	NM_016743	ENSMUSG00000022454	Nell2	A330108N19Rik|R75516|mel91	NEL-like 2	protein-coding	0.165000	0.815920	
mm_10849.1	chr2	24977826	24978026	+	1	NA	NA	NA	1893	NM_146251	241274	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0.010000	0.467662	
mm_77417.1	chr8	120667978	120668178	-	1	NA	NA	NA	34	NM_010926	18117	Mm.2136	NM_010926	ENSMUSG00000031819	Emc8	Cox4nb|Fam158b|Noc4	ER membrane protein complex subunit 8	protein-coding	0.170000	0.761194	
mm_74072.1	chr8	122438062	122438262	+	1	NA	NA	NA	-5222	NM_007806	13057	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.005000	0.512438	
mm_105960.1	chr11	115461822	115462022	-	1	NA	NA	NA	-551	NM_001080934	217316	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	0.000000	0.492537	
mm_102741.1	chr11	67252601	67252801	-	1	NA	NA	NA	14889	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.020000	0.462687	
mm_161019.1	chr11	120643375	120643575	-	1	NA	NA	NA	195	NM_144795	209027	Mm.127731	NM_144795	ENSMUSG00000025140	Pycr1	-	pyrroline-5-carboxylate reductase 1	protein-coding	0.030000	0.587065	
mm_111392.1	chr12	90070929	90071129	-	1	NA	NA	NA	258546	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.005000	0.432836	
mm_137057.1	chr17	17932206	17932406	+	1	NA	NA	NA	-38152	NM_008042	14294	Mm.378918	NM_008042	ENSMUSG00000079700	Fpr3	ALX|Fpr-rs1|Fpr-s1|Fprl1|LXA4-R|Lxa4r	formyl peptide receptor 3	protein-coding	0.005000	0.303483	
mm_151590.1	chr19	3323621	3323821	-	1	NA	NA	NA	420	NM_013495	12894	Mm.18522	NM_013495	ENSMUSG00000024900	Cpt1a	C730027G07|CPTI|Cpt1	carnitine palmitoyltransferase 1a, liver	protein-coding	0.050000	0.597015	
mm_67668.1	chr7	87493234	87493434	-	1	NA	NA	NA	178	NM_011661	22173	Mm.238127	NM_011661	ENSMUSG00000004651	Tyr	Oca1|albino|c|skc35	tyrosinase	protein-coding	0.005000	0.447761	
mm_56900.1	chr6	119196307	119196507	-	1	NA	NA	NA	2	NM_001255997	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.015000	0.462687	
mm_70555.1	chr8	13060841	13061041	+	1	NA	NA	NA	33	NM_025834	66901	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.020000	0.597015	
mm_166772.1	chr6	136233960	136234160	+	1	NA	NA	NA	-60549	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.000000	0.422886	
mm_60217.1	chr7	43506835	43507035	+	1	NA	NA	NA	-997	NM_028737	74054	Mm.195732	NM_028737	ENSMUSG00000013353	4931406B18Rik	4930538L19Rik	RIKEN cDNA 4931406B18 gene	protein-coding	0.040000	0.447761	
mm_73400.1	chr8	105860503	105860703	+	1	NA	NA	NA	-31	NM_026532	68051	Mm.455474	NM_026532	ENSMUSG00000008450	Nutf2	2700067I02Rik|AI115459|AI413596|AW546000|Ntf2|Ntf3|PP15	nuclear transport factor 2	protein-coding	0.090000	0.636816	
mm_30370.1	chr3	152193658	152193858	-	1	NA	NA	NA	87	NM_025926	67035	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0.035000	0.482587	
mm_82109.1	chr9	123113146	123113346	+	1	NA	NA	NA	15	NM_001081188	66446	Mm.41562	NM_001081188	ENSMUSG00000025785	Exosc7	2610002K22Rik|AV212732|mKIAA0116	exosome component 7	protein-coding	0.150000	0.726368	
mm_41996.1	chr5	107830152	107830352	+	1	NA	NA	NA	90	NM_001276397	73318	Mm.441500	NM_028502	ENSMUSG00000063447	Ube2d2b	1700013N18Rik	ubiquitin-conjugating enzyme E2D 2B	protein-coding	0.065000	0.621891	
mm_10982.1	chr2	25877793	25877993	+	1	NA	NA	NA	110	NM_001302351	227632	Mm.119462	NM_175462	ENSMUSG00000058740	Kcnt1	C030030G16Rik|Slack|Slo2.2|slo2	potassium channel, subfamily T, member 1	protein-coding	0.135000	0.786070	
mm_39269.1	chr5	3657079	3657279	+	1	NA	NA	NA	175	NM_029154	75010	Mm.85064	NM_029141	ENSMUSG00000014529	Tmbim7	4930403J02Rik|4930500J03Rik|4930511M11Rik|Lfg5|Lgf5|Tmbim1b	transmembrane BAX inhibitor motif containing 7	protein-coding	0.005000	0.487562	
mm_86231.1	chr9	120305943	120306143	-	1	NA	NA	NA	1970	NM_144557	245049	Mm.100936	NM_144557	ENSMUSG00000041794	Myrip	A230081N12Rik|Slac2-c|Slac2c	myosin VIIA and Rab interacting protein	protein-coding	0.005000	0.497512	
mm_81194.1	chr9	107554519	107554719	+	1	NA	NA	NA	36	NM_019713	56289	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0.130000	0.661692	
mm_68213.1	chr7	104409343	104409543	-	1	NA	NA	NA	-50797	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.000000	0.383085	
mm_141.1	chr1	10993365	10993565	+	1	NA	NA	NA	0	NM_029525	109294	Mm.123247	NM_029525	ENSMUSG00000048960	Prex2	6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	protein-coding	0.050000	0.582090	
mm_92608.1	chr10	80121661	80121861	-	1	NA	NA	NA	5958	NM_001301854	20869	Mm.44231	NM_011492	ENSMUSG00000003068	Stk11	AA408040|Lkb1|Par-4|R75140	serine/threonine kinase 11	protein-coding	0.005000	0.522388	
mm_3815.1	chr1	159232096	159232296	+	1	NA	NA	NA	-130	NM_011931	26374	Mm.328135	NM_011931	ENSMUSG00000040782	Rfwd2	AI316802|C80879|Cop1	ring finger and WD repeat domain 2	protein-coding	0.170000	0.786070	
mm_109019.1	chr12	103532360	103532560	+	1	NA	NA	NA	-105	NM_028980	74521	Mm.248619	NM_028980	ENSMUSG00000021209	Ppp4r4	8430415E04Rik|mKIAA1622	protein phosphatase 4, regulatory subunit 4	protein-coding	0.130000	0.776119	
mm_161402.1	chr14	120324763	120324963	+	1	NA	NA	NA	49194	NM_175341	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding	0.020000	0.388060	54(TCGTATTAAAGC,-,0.00)
mm_109929.1	chr12	8761968	8762168	-	1	NA	NA	NA	-9328	NM_011519	20969	Mm.2580	NM_011519	ENSMUSG00000020592	Sdc1	AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1	syndecan 1	protein-coding	0.000000	0.378109	
mm_142476.1	chr17	45686112	45686312	-	1	NA	NA	NA	6	NM_198167	224807	Mm.157904	NM_198167	ENSMUSG00000036026	Tmem63b	BC026370	transmembrane protein 63b	protein-coding	0.110000	0.800995	
mm_23416.1	chr3	58525947	58526147	+	1	NA	NA	NA	-163	NM_030685	28146	Mm.29702	NM_030685	ENSMUSG00000027808	Serp1	D3Ucla1|Ramp4	stress-associated endoplasmic reticulum protein 1	protein-coding	0.090000	0.577114	
mm_118683.1	chr14	22113350	22113550	+	1	NA	NA	NA	93738	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.353234	
mm_147115.1	chr18	35739908	35740108	-	1	NA	NA	NA	546	NM_001289592	72512	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0.015000	0.482587	
mm_122518.1	chr14	47189313	47189513	-	1	NA	NA	NA	-11	NM_008102	14528	Mm.10651	NM_008102	ENSMUSG00000037580	Gch1	GTP-CH|GTPCH|Gch	GTP cyclohydrolase 1	protein-coding	0.105000	0.671642	-33(TGCCATAAAAAG,-,0.00),-31(CCATAAAAAGAG,+,0.00)
mm_124370.1	chr14	105897234	105897434	-	1	NA	NA	NA	-515	NM_011897	24064	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty homolog 2 (Drosophila)	protein-coding	0.095000	0.671642	
mm_77046.1	chr8	109575826	109576026	-	1	NA	NA	NA	3246	NM_017370	15439	Mm.26730	NM_017370	ENSMUSG00000031722	Hp	HP-1|preHP2	haptoglobin	protein-coding	0.055000	0.606965	
mm_58099.1	chr6	137563475	137563675	-	1	NA	NA	NA	7434	NM_001271595	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.025000	0.512438	-78(GCTTAAAAACCA,+,0.00),-34(GGGCTTTTAAGC,-,0.00),-32(GCTTTTAAGCTG,+,0.00)
mm_141489.1	chr17	31277240	31277440	-	1	NA	NA	NA	16	NM_025290	22092	Mm.12743	NM_025290	ENSMUSG00000024033	Rsph1	MCA|Tsga2	radial spoke head 1 homolog (Chlamydomonas)	protein-coding	0.065000	0.592040	
mm_26724.1	chr3	159839637	159839837	+	1	NA	NA	NA	42	NM_026582	68151	Mm.6766	NM_026582	ENSMUSG00000028173	Wls	5031439A09Rik|AI173978|AI987742|Gpr177	wntless homolog (Drosophila)	protein-coding	0.080000	0.661692	
mm_112529.1	chr13	9280551	9280751	+	1	NA	NA	NA	4126	NM_001081426	208440	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.000000	0.328358	
mm_134108.1	chr16	9995438	9995638	-	1	NA	NA	NA	-3005	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.120000	0.736318	
mm_32336.1	chr4	104463876	104464076	+	1	NA	NA	NA	96438	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding	0.020000	0.562189	
mm_171965.1	chr5	86369464	86369664	-	1	NA	NA	NA	3823	NM_145561	231382	Mm.240139	NM_145561	ENSMUSG00000061259	Tmprss11d	AST|AsP|BC020151	transmembrane protease, serine 11d	protein-coding	0.020000	0.383085	
mm_68482.1	chr7	110981979	110982179	-	1	NA	NA	NA	382	NM_194464	17540	Mm.250023	NM_010826	ENSMUSG00000005611	Mrvi1	BB115629|Irag|Ris1	MRV integration site 1	protein-coding	0.020000	0.497512	-84(GACCTTAAATGG,-,0.00),-82(CCTTAAATGGTA,+,0.00)
mm_88911.1	chr10	81179610	81179810	+	1	NA	NA	NA	749	NR_028549	100217454		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.050000	0.597015	
mm_78401.1	chr9	28920904	28921104	+	1	NA	NA	NA	1042125	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.010000	0.328358	-25(CCCTTAAAACGC,+,0.00)
mm_37003.1	chr4	110355934	110356134	-	1	NA	NA	NA	-4123	NM_001163397	15572	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein-coding	0.000000	0.378109	
mm_82760.1	chr9	26880473	26880673	-	1	NA	NA	NA	-19750	NM_001113323	70893	Mm.78118	NM_001113323	ENSMUSG00000031966	Glb1l3	4921509F24Rik	galactosidase, beta 1 like 3	protein-coding	0.005000	0.457711	
mm_153007.1	chr19	30175355	30175555	-	1	NA	NA	NA	-14	NM_138595	104174	Mm.274852	NM_138595	ENSMUSG00000024827	Gldc	D030049L12Rik|D19Wsu57e	glycine decarboxylase	protein-coding	0.055000	0.611940	
mm_75283.1	chr8	41016696	41016896	-	1	NA	NA	NA	-672	NR_015457	78849	Mm.440930	NR_015457	ENSMUSG00000084960	B430010I23Rik	-	RIKEN cDNA B430010I23 gene	ncRNA	0.030000	0.537313	
mm_130770.1	chr15	101418258	101418458	-	1	NA	NA	NA	5955	NM_033073	110310	Mm.486285	NM_033073	ENSMUSG00000023039	Krt7	D15Wsu77e|K7|Krt2-7	keratin 7	protein-coding	0.030000	0.562189	
mm_103290.1	chr11	72410214	72410414	-	1	NA	NA	NA	1399	NM_177776	276829	Mm.46732	NM_177776	ENSMUSG00000045667	Smtnl2	D130058I21Rik	smoothelin-like 2	protein-coding	0.000000	0.611940	-50(GCTTTTCAAGGG,+,0.00)
mm_145454.1	chr18	60226047	60226247	+	1	NA	NA	NA	14070	NM_001033767	240327	Mm.357104	NM_001033767	ENSMUSG00000073555	Gm4951	EG240327|Ifgga2	predicted gene 4951	protein-coding	0.000000	0.298507	
mm_158389.1	chrX	136172112	136172312	-	1	NA	NA	NA	39	NM_001168578	66684	Mm.182094	NM_025703	ENSMUSG00000051579	Tceal8	3930402F23Rik	transcription elongation factor A (SII)-like 8	protein-coding	0.035000	0.547264	83(ACTTTAATAGTG,+,0.00)
mm_55903.1	chr6	83677710	83677910	-	1	NA	NA	NA	47	NM_144943	246278	Mm.136079	NM_144943	ENSMUSG00000034783	Cd207	-	CD207 antigen	protein-coding	0.020000	0.487562	
mm_112679.1	chr13	16028204	16028404	+	1	NA	NA	NA	16453	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.323383	-4(GGGTTTAAGAGC,-,0.00),21(AGCTATAAAAGA,-,0.00)
mm_8679.1	chr1	156814713	156814913	-	1	NA	NA	NA	-24210	NM_028333	72713	Mm.389206	NM_028333	ENSMUSG00000033544	Angptl1	2810039D03Rik|ANG3|ANGPT3|ANGY|ARP1	angiopoietin-like 1	protein-coding	0.000000	0.308458	
mm_35738.1	chr4	45320307	45320507	-	1	NA	NA	NA	196	NM_025513	66362	Mm.275788	NM_025513	ENSMUSG00000028322	Exosc3	2310005D06Rik|AI593501|Rrp40	exosome component 3	protein-coding	0.120000	0.721393	
mm_10497.1	chr2	14959659	14959859	+	1	NA	NA	NA	86103	NM_001309519	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.000000	0.363184	
mm_18472.1	chr2	62411866	62412066	-	1	NA	NA	NA	265	NM_010074	13482	Mm.1151	NM_010074	ENSMUSG00000035000	Dpp4	Cd26|Dpp-4|THAM	dipeptidylpeptidase 4	protein-coding	0.085000	0.646766	
mm_95854.1	chr11	57831614	57831814	+	1	NA	NA	NA	433	NM_008213	15110	Mm.4746	NM_008213	ENSMUSG00000037335	Hand1	Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND	heart and neural crest derivatives expressed transcript 1	protein-coding	0.050000	0.631841	
mm_24179.1	chr3	88579565	88579765	+	1	NA	NA	NA	-6	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.075000	0.626866	
mm_83093.1	chr9	40321086	40321286	-	1	NA	NA	NA	-12286	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.020000	0.562189	
mm_56663.1	chr6	113531407	113531607	-	1	NA	NA	NA	131	NM_175101	66087	Mm.275989	NM_175101	ENSMUSG00000030286	Emc3	0610039A15Rik|AI225901|AW260416|Pob|Tmem111	ER membrane protein complex subunit 3	protein-coding	0.075000	0.641791	
mm_9288.1	chr1	171634823	171635023	-	1	NA	NA	NA	6977	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.422886	
mm_101712.1	chr11	42133412	42133612	-	1	NA	NA	NA	49418	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding	0.040000	0.442786	
mm_133711.1	chr16	93591072	93591272	+	1	NA	NA	NA	12643	NM_145482	224440	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	0.040000	0.537313	-43(CGCCTTTAAAGG,-,0.00),-42(GCCTTTAAAGGG,+,0.00),-42(GCCTTTAAAGGG,-,0.00),-41(CCTTTAAAGGGC,+,0.00)
mm_5573.1	chr1	39478607	39478807	-	1	NA	NA	NA	40	NM_018775	54610	Mm.387293	NM_018775	ENSMUSG00000003134	Tbc1d8	AD3|HBLP1|VRP	TBC1 domain family, member 8	protein-coding	0.135000	0.791045	
mm_1660.1	chr1	74713218	74713418	+	1	NA	NA	NA	-217	NM_024264	104086	Mm.85083	NM_024264	ENSMUSG00000026170	Cyp27a1	1300013A03Rik|Cyp27	cytochrome P450, family 27, subfamily a, polypeptide 1	protein-coding	0.020000	0.562189	
mm_81821.1	chr9	118047293	118047493	+	1	NA	NA	NA	6871	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.010000	0.417910	
mm_8776.1	chr1	161071311	161071511	-	1	NA	NA	NA	644	NR_131028	70454	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	0.045000	0.442786	-35(TCTTAAATACAC,+,0.00)
mm_145009.1	chr18	38542792	38542992	+	1	NA	NA	NA	58376	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.020000	0.487562	
mm_161155.1	chr13	23934609	23934809	+	1	NA	NA	NA	247	NM_175658	319163	Mm.377876	NM_175658	ENSMUSG00000060081	Hist1h2aa	Th2a	histone cluster 1, H2aa	protein-coding	0.080000	0.626866	
mm_45472.1	chr5	69483846	69484046	-	1	NA	NA	NA	58701	NM_023784	75581	Mm.154776	NM_023784	ENSMUSG00000029158	Yipf7	2310016N21Rik|Yip1b	Yip1 domain family, member 7	protein-coding	0.005000	0.393035	
mm_121928.1	chr14	23835454	23835654	-	1	NA	NA	NA	168651	NM_001253375	16531	Mm.343607	NM_010610	ENSMUSG00000063142	Kcnma1	5730414M22Rik|BKCa|MaxiK|Slo|Slo1|mSlo|mSlo1	potassium large conductance calcium-activated channel, subfamily M, alpha member 1	protein-coding	0.015000	0.507463	
mm_141187.1	chr17	26939320	26939520	-	1	NA	NA	NA	38	NR_104458	67675	Mm.439919	NM_026307	ENSMUSG00000024194	Cuta	0610039D01Rik|1810022E02Rik|1810060C03Rik|2700094G22Rik|AI326454	cutA divalent cation tolerance homolog	protein-coding	0.105000	0.651741	
mm_125660.1	chr15	64098234	64098434	+	1	NA	NA	NA	-37886	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.005000	0.542289	
mm_152141.1	chr19	7094764	7094964	-	1	NA	NA	NA	10865	NM_201411	396184	Mm.386930	NM_201411	ENSMUSG00000047787	Flrt1	AW742165|D630040I23Rik	fibronectin leucine rich transmembrane protein 1	protein-coding	0.035000	0.442786	
mm_11140.1	chr2	28480080	28480280	+	1	NA	NA	NA	12114	NM_001166031	118451	Mm.294951	NM_080452	ENSMUSG00000035772	Mrps2	1500019M10Rik	mitochondrial ribosomal protein S2	protein-coding	0.005000	0.517413	
mm_6453.1	chr1	74016488	74016688	-	1	NA	NA	NA	107859	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.030000	0.542289	
mm_117031.1	chr13	58274201	58274401	-	1	NA	NA	NA	-113	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.165000	0.791045	
mm_48861.1	chr5	149814535	149814735	-	1	NA	NA	NA	-2884	NR_077242	100861794	Mm.402054	NR_077242	ENSMUSG00000106740	Gm21221	-	predicted gene, 21221	ncRNA	0.000000	0.258706	47(ACCTCTAAAAAG,-,0.00)
mm_140233.1	chr17	84103541	84103741	+	1	NA	NA	NA	24981	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.020000	0.492537	
mm_136568.1	chr17	3397097	3397297	+	1	NA	NA	NA	-10	NM_011878	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.030000	0.447761	
mm_144161.1	chr18	5669166	5669366	+	1	NA	NA	NA	-76829	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	0.010000	0.467662	
mm_114106.1	chr13	54789362	54789562	+	1	NA	NA	NA	57	NM_028841	74257	Mm.32883	NM_028841	ENSMUSG00000025875	Tspan17	2210021G21Rik|AI047581|Fbxo23|Tm4sf17	tetraspanin 17	protein-coding	0.100000	0.756219	
mm_159013.1	chr1	167466612	167466812	-	1	NA	NA	NA	68	NM_001013382	240899	Mm.159799	NM_001013382	ENSMUSG00000040485	Lrrc52	4930413P14Rik	leucine rich repeat containing 52	protein-coding	0.010000	0.547264	
mm_95031.1	chr11	32057576	32057776	+	1	NA	NA	NA	43552	NR_130637	104692	Mm.414035	NR_130637	ENSMUSG00000086386	Gm12108	BB052462|OTTMUSG00000005365	predicted gene 12108	ncRNA	0.015000	0.631841	-50(GGCCATTAGAGG,-,0.00)
mm_133760.1	chr16	94468399	94468599	+	1	NA	NA	NA	58130	NM_007834	13185	Mm.7472	NM_007834	ENSMUSG00000022898	Dscr3	AW538125|Dcra	Down syndrome critical region gene 3	protein-coding	0.005000	0.348259	
mm_63092.1	chr7	122366047	122366247	+	1	NA	NA	NA	77022	NM_008855	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.015000	0.472637	
mm_47204.1	chr5	120907422	120907622	-	1	NA	NA	NA	3	NM_145211	246730	Mm.14301	NM_145211	ENSMUSG00000052776	Oas1a	L3	2'-5' oligoadenylate synthetase 1A	protein-coding	0.020000	0.542289	
mm_98051.1	chr11	85739857	85740057	+	1	NA	NA	NA	-20213	NR_045875	71489	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.015000	0.492537	
mm_147593.1	chr18	56675448	56675648	-	1	NA	NA	NA	-32265	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.010000	0.517413	
mm_47505.1	chr5	124035671	124035871	-	1	NA	NA	NA	-3511	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.025000	0.472637	
mm_91058.1	chr10	18847927	18848127	-	1	NA	NA	NA	2956	NM_022032	64058	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	0.000000	0.532338	
mm_77738.1	chr8	126937277	126937477	-	1	NA	NA	NA	8544	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.005000	0.477612	
mm_154264.1	chr19	60770954	60771154	-	1	NA	NA	NA	3331	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.025000	0.417910	
mm_166765.1	chr6	134020765	134020965	-	1	NA	NA	NA	-14835	NM_001303102	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.000000	0.427861	
mm_45989.1	chr5	90498247	90498447	-	1	NA	NA	NA	7633	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.015000	0.432836	
mm_154412.1	chrM	15312	15512	+	1	NA	NA	NA	NA	NA									0.005000	0.353234	
mm_133529.1	chr16	91011154	91011354	+	1	NA	NA	NA	5	NR_028368	67394	Mm.491293	NR_028368	ENSMUSG00000087354	4930404I05Rik	-	RIKEN cDNA 4930404I05 gene	ncRNA	0.125000	0.721393	
mm_81256.1	chr9	107992393	107992593	+	1	NA	NA	NA	-6577	NM_026597	68176	Mm.76166	NM_026597	ENSMUSG00000042106	Fam212a	6230427J02Rik|Inka1	family with sequence similarity 212, member A	protein-coding	0.000000	0.502488	
mm_26773.1	chr3	8964131	8964331	-	1	NA	NA	NA	-177	NM_001025261	21985	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.055000	0.626866	
mm_98848.1	chr11	97659704	97659904	+	1	NA	NA	NA	-3608	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.025000	0.572139	
mm_115640.1	chr13	12260084	12260284	-	1	NA	NA	NA	-2071	NM_001081128	238505	Mm.40335	NM_001081128	ENSMUSG00000021311	Mtr	AI894170|D830038K18Rik|MS	5-methyltetrahydrofolate-homocysteine methyltransferase	protein-coding	0.010000	0.507463	
mm_14297.1	chr2	128967265	128967465	+	1	NA	NA	NA	-37	NM_178404	78751	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	0.090000	0.626866	
mm_160249.1	chr7	105404436	105404636	+	1	NA	NA	NA	-32	NM_001033317	233649	Mm.99556	NM_001033317	ENSMUSG00000030897	Cnga4	-	cyclic nucleotide gated channel alpha 4	protein-coding	0.005000	0.567164	-98(CCTCATTAAAGG,-,0.00)
mm_22606.1	chr3	14506546	14506746	+	1	NA	NA	NA	25947	NM_080852	140918	Mm.215250	NM_080852	ENSMUSG00000039710	Slc7a12	Asc-2|XAT1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 12	protein-coding	0.005000	0.298507	
mm_165184.1	chr2	29889613	29889813	+	1	NA	NA	NA	-7	NM_001177661	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.095000	0.696517	-6(GGGCCTAAATGG,-,0.00),-4(GCCTAAATGGCG,+,0.00)
mm_42337.1	chr5	114903398	114903598	+	1	NA	NA	NA	6564	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.010000	0.278607	65(AACTATTAAAGC,-,0.00)
mm_102204.1	chr11	54778809	54779009	-	1	NA	NA	NA	8794	NM_178626	72729	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.000000	0.303483	
mm_83762.1	chr9	51963456	51963656	-	1	NA	NA	NA	46	NM_007996	14148	Mm.1061	NM_007996	ENSMUSG00000032051	Fdx1	-	ferredoxin 1	protein-coding	0.135000	0.726368	
mm_95821.1	chr11	55394893	55395093	+	1	NA	NA	NA	25087	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.015000	0.517413	
mm_99045.1	chr11	98974496	98974696	+	1	NA	NA	NA	8420	NM_178596	353155	Mm.453253	NM_178596	ENSMUSG00000047197	Gjd3	Gja11|Gjc1|cx30.2	gap junction protein, delta 3	protein-coding	0.010000	0.601990	
mm_71174.1	chr8	40633495	40633695	+	1	NA	NA	NA	1197	NM_001040699	54384	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.020000	0.442786	
mm_68157.1	chr7	102481593	102481793	-	1	NA	NA	NA	-3791	NM_001011782	257947	Mm.376117	NM_001011782	ENSMUSG00000044814	Olfr543	MOR42-2	olfactory receptor 543	protein-coding	0.005000	0.527363	
mm_88070.1	chr10	67797836	67798036	+	1	NA	NA	NA	114726	NM_178679	216049	Mm.268346	NM_178679	ENSMUSG00000037855	Zfp365	AI839779|AV340892|DBZ|Su48|Znf365|talanin	zinc finger protein 365	protein-coding	0.005000	0.477612	
mm_80836.1	chr9	97111211	97111411	+	1	NA	NA	NA	-270	NM_138756	192287	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.080000	0.631841	
mm_11170.1	chr2	28560856	28561056	+	1	NA	NA	NA	2447	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.010000	0.562189	
mm_39076.1	chr4	154299954	154300154	-	1	NA	NA	NA	-159	NM_001112744	230972	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.120000	0.761194	
mm_90604.1	chr10	128322514	128322714	+	1	NA	NA	NA	155	NM_019953	56530	Mm.44220	NM_019953	ENSMUSG00000025381	Cnpy2	5330432A10Rik|AW229003|D10Bwg1546e|Tmem4|Zsig9	canopy FGF signaling regulator 2	protein-coding	0.060000	0.656716	
mm_19115.1	chr2	79908333	79908533	-	1	NA	NA	NA	-34	NM_001009978	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.005000	0.407960	46(TGGCATAAAAGA,-,0.00)
mm_15905.1	chr2	164968222	164968422	+	1	NA	NA	NA	334	NM_020333	57138	Mm.252987	NM_020333	ENSMUSG00000017740	Slc12a5	KCC2|mKIAA1176	solute carrier family 12, member 5	protein-coding	0.130000	0.706468	
mm_161574.1	chr16	23107333	23107533	+	1	NA	NA	NA	-35	NM_001123038	13682	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0.150000	0.736318	
mm_68944.1	chr7	126503508	126503708	-	1	NA	NA	NA	-306	NM_183020	233871	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.105000	0.681592	-34(CAGCATTTAAGG,-,0.00),-32(GCATTTAAGGTG,+,0.00)
mm_53443.1	chr6	134396230	134396430	+	1	NA	NA	NA	1	NM_025778	66813	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.015000	0.442786	
mm_169027.1	chr13	117966448	117966648	-	1	NA	NA	NA	-246537	NR_045508	71100	Mm.414841	NR_045508	ENSMUSG00000079048	4933413L06Rik	-	RIKEN cDNA 4933413L06 gene	ncRNA	0.005000	0.457711	
mm_140794.1	chr17	20944995	20945195	-	1	NA	NA	NA	-359	NM_016891	51792	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	0.025000	0.527363	
mm_110082.1	chr12	24681694	24681894	-	1	NA	NA	NA	1	NM_138686	12879	Mm.52265	NM_138686	ENSMUSG00000062563	Cys1	2900006B19Rik|AV218859|Ccap|ck|cpk	cystin 1	protein-coding	0.020000	0.597015	
mm_161854.1	chr18	15410835	15411035	-	1	NA	NA	NA	47	NM_001308643	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.025000	0.472637	65(GCATATATAAAG,-,0.00)
mm_27503.1	chr3	55403118	55403318	-	1	NA	NA	NA	-58540	NM_001195539	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.005000	0.412935	
mm_64548.1	chr7	144407021	144407221	+	1	NA	NA	NA	36312	NR_037302	100499519		NR_037302	ENSMUSG00000093912	Mir3470b	mmu-mir-3470b	microRNA 3470b	ncRNA	0.055000	0.621891	
mm_87098.1	chr10	33091315	33091515	+	1	NA	NA	NA	7932	NM_029726	76757	Mm.338508	NM_029726	ENSMUSG00000019787	Trdn	2310045H21Rik|EG432451|TDN	triadin	protein-coding	0.010000	0.328358	
mm_66551.1	chr7	45211782	45211982	-	1	NA	NA	NA	1	NM_015789	50722	Mm.27287	NM_015789	ENSMUSG00000030792	Dkkl1	AI414495|SGY|SGY-1|SGY1|Soggy|mSgy	dickkopf-like 1	protein-coding	0.080000	0.606965	
mm_47382.1	chr5	122990306	122990506	-	1	NA	NA	NA	1052	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.015000	0.467662	
mm_135853.1	chr16	59557322	59557522	-	1	NA	NA	NA	-1670	NM_174848	224273	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	0.025000	0.497512	
mm_17430.1	chr2	27507479	27507679	-	1	NA	NA	NA	-7568	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.015000	0.557214	
mm_145404.1	chr18	57405315	57405515	+	1	NA	NA	NA	50682	NM_028447	73137	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	0.030000	0.502488	
mm_31137.1	chr4	43264153	43264353	+	1	NA	NA	NA	-2906	NM_177195	320571	Mm.74465	NM_177195	ENSMUSG00000028457	Atp8b5	4930417M19Rik|Feta	ATPase, class I, type 8B, member 5	protein-coding	0.000000	0.477612	
mm_82804.1	chr9	29834337	29834537	-	1	NA	NA	NA	128692	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.000000	0.323383	
mm_7135.1	chr1	91053748	91053948	-	1	NA	NA	NA	404	NM_008515	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.035000	0.587065	
mm_107069.1	chr12	16894986	16895186	+	1	NA	NA	NA	108	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0.190000	0.835821	
mm_111334.1	chr12	86824835	86825035	-	1	NA	NA	NA	59879	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.040000	0.577114	
mm_130422.1	chr15	98093184	98093384	-	1	NA	NA	NA	285	NM_144851	223870	Mm.384023	NM_144851	ENSMUSG00000033075	Senp1	2310046A20Rik|D15Ertd528e|E330036L07Rik|suPr-2	SUMO1/sentrin specific peptidase 1	protein-coding	0.105000	0.706468	
mm_82693.1	chr9	22376136	22376336	-	1	NA	NA	NA	2987	NR_030448	751551		NR_030448	ENSMUSG00000076117	Mir680-2	Mirn680-2	microRNA 680-2	ncRNA	0.015000	0.522388	
mm_45438.1	chr5	67269384	67269584	-	1	NA	NA	NA	8919	NM_030108	67878	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	0.020000	0.577114	
mm_173172.1	chrX	4899305	4899505	+	1	NA	NA	NA	-52730	NM_001243024	100042275	Mm.427352	NM_001243024	ENSMUSG00000094860	Btbd35f27	Gm3763	BTB domain containing 35, family member 27	protein-coding	0.030000	0.477612	
mm_171068.1	chr3	114094457	114094657	+	1	NA	NA	NA	64017	NM_007729	12814	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding	0.005000	0.383085	8(GACTATAAAGAG,-,0.00)
mm_123418.1	chr14	64403564	64403764	-	1	NA	NA	NA	13292	NM_001253716	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.005000	0.363184	
mm_74426.1	chr8	3672227	3672427	-	1	NA	NA	NA	-4150	NM_025701	66682	Mm.29090	NM_025701	ENSMUSG00000040236	Trappc5	4021401A16Rik|TRS31	trafficking protein particle complex 5	protein-coding	0.055000	0.616915	
mm_64666.1	chr7	4426699	4426899	-	1	NA	NA	NA	18858	NM_175372	108841	Mm.413106	NM_175372	ENSMUSG00000008435	Rdh13	8430425D21Rik	retinol dehydrogenase 13 (all-trans and 9-cis)	protein-coding	0.000000	0.378109	
mm_23667.1	chr3	68506812	68507012	+	1	NA	NA	NA	12731	NM_001282044	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.010000	0.482587	-35(GCATTTAAAAGA,-,0.00)
mm_55850.1	chr6	83416521	83416721	-	1	NA	NA	NA	-15519	NR_105793	102465194		NR_105793	ENSMUSG00000099045	Mir6374	Gm27292|mmu-mir-6374	microRNA 6374	ncRNA	0.005000	0.477612	-36(CCTTTTAAGAAG,+,0.00)
mm_43263.1	chr5	130280847	130281047	+	1	NA	NA	NA	23910	NM_001015876	100929	Mm.271296	NM_178897	ENSMUSG00000056310	Tyw1	AW125391|Rsafd1	tRNA-yW synthesizing protein 1 homolog (S. cerevisiae)	protein-coding	0.025000	0.487562	
mm_92556.1	chr10	79766906	79767106	-	1	NA	NA	NA	-54	NR_027505	70294	Mm.466670	NM_144528	ENSMUSG00000035890	Rnf126	2610010O19Rik	ring finger protein 126	protein-coding	0.125000	0.691542	
mm_123599.1	chr14	67780369	67780569	-	1	NA	NA	NA	35288	NR_133010	14714	Mm.358309	NM_008145	ENSMUSG00000015812	Gnrh1	Gnrh|Gnrh2|LHRH|Lhrh1|Lnrh|hpg	gonadotropin releasing hormone 1	protein-coding	0.005000	0.487562	
mm_100392.1	chr11	119389981	119390181	+	1	NA	NA	NA	-391	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.110000	0.711443	
mm_19926.1	chr2	116063774	116063974	-	1	NA	NA	NA	745	NM_001346044	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.050000	0.641791	
mm_25187.1	chr3	103385083	103385283	+	1	NA	NA	NA	105890	NM_001079830	94093	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.010000	0.567164	-30(CCCTTTATAGAT,+,0.00)
mm_165763.1	chr3	118756191	118756391	+	1	NA	NA	NA	194113	NM_170778	99586	Mm.27907	NM_170778	ENSMUSG00000033308	Dpyd	AI315208|DPD|E330028L06Rik	dihydropyrimidine dehydrogenase	protein-coding	0.005000	0.417910	
mm_56431.1	chr6	97312441	97312641	-	1	NA	NA	NA	-59761	NM_001081157	320502	Mm.68163	NM_001081157	ENSMUSG00000044086	Lmod3	5430424A14Rik	leiomodin 3 (fetal)	protein-coding	0.040000	0.512438	
mm_130642.1	chr15	100580120	100580320	-	1	NA	NA	NA	6145	NM_010127	19009	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0.025000	0.552239	
mm_139761.1	chr17	64600674	64600874	+	1	NA	NA	NA	-875	NM_008549	17158	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.155000	0.786070	
mm_56383.1	chr6	94283792	94283992	-	1	NA	NA	NA	25	NM_001286786	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.120000	0.696517	55(CTGCTTAAAGGG,-,0.00),57(GCTTAAAGGGGC,+,0.00)
mm_103276.1	chr11	72135899	72136099	-	1	NA	NA	NA	-110	NM_001081641	327958	Mm.351793	NM_001024927	ENSMUSG00000040543	Pitpnm3	A330068P14Rik|AI848332|Ackr6|Gm880	PITPNM family member 3	protein-coding	0.130000	0.716418	
mm_116781.1	chr13	53163378	53163578	-	1	NA	NA	NA	122631	NM_013846	26564	Mm.342774	NM_013846	ENSMUSG00000021464	Ror2	Ntrkr2|mRor2	receptor tyrosine kinase-like orphan receptor 2	protein-coding	0.015000	0.398010	
mm_82282.1	chr9	7572647	7572847	-	1	NA	NA	NA	1351	NM_001310717	234911	Mm.334940	NM_001030289	ENSMUSG00000070323	Mmp27	Gm180	matrix metallopeptidase 27	protein-coding	0.000000	0.298507	29(CCTTAAATAGCC,+,0.00)
mm_81288.1	chr9	108306735	108306935	+	1	NA	NA	NA	38	NM_001313962	11848	Mm.757	NM_016802	ENSMUSG00000007815	Rhoa	Arha|Arha1|Arha2	ras homolog family member A	protein-coding	0.140000	0.791045	
mm_27888.1	chr3	79269661	79269861	-	1	NA	NA	NA	56842	NR_045502	70924	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0.010000	0.412935	
mm_85558.1	chr9	106887008	106887208	-	1	NA	NA	NA	-108	NM_175402	109095	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	0.180000	0.781095	
mm_137179.1	chr17	23816121	23816321	+	1	NA	NA	NA	12888	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.055000	0.512438	
mm_84354.1	chr9	64341202	64341402	-	1	NA	NA	NA	-45	NM_001001295	213550	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	0.085000	0.631841	
mm_41714.1	chr5	101897831	101898031	+	1	NA	NA	NA	132801	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.005000	0.368159	
mm_1224.1	chr1	62743488	62743688	+	1	NA	NA	NA	40271	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.005000	0.522388	
mm_36301.1	chr4	68882574	68882774	-	1	NA	NA	NA	71723	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.005000	0.398010	
mm_133409.1	chr16	84852794	84852994	+	1	NA	NA	NA	-17269	NM_001302213	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.010000	0.388060	
mm_112677.1	chr13	16027890	16028090	+	1	NA	NA	NA	16139	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.378109	
mm_51011.1	chr6	65017766	65017966	+	1	NA	NA	NA	-24801	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.040000	0.492537	
mm_14122.1	chr2	125941658	125941858	+	1	NA	NA	NA	75535	NM_001291002	69976	Mm.20216	NM_175154	ENSMUSG00000027207	Galk2	2810017M24Rik|AI327030|Gk2	galactokinase 2	protein-coding	0.015000	0.348259	
mm_14491.1	chr2	131936698	131936898	+	1	NA	NA	NA	-14063	NM_001278257	26434	Mm.180750	NM_023043	ENSMUSG00000027338	Prnd	AI450264|Dpl|PrPLP|doppel	prion protein dublet	protein-coding	0.030000	0.582090	
mm_21324.1	chr2	157101119	157101319	-	1	NA	NA	NA	14164	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.010000	0.417910	
mm_80947.1	chr9	102834867	102835067	+	1	NA	NA	NA	47	NM_001042607	20187	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0.200000	0.850746	
mm_129023.1	chr15	74958519	74958719	-	1	NA	NA	NA	3513	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.035000	0.577114	
mm_173246.1	chrX	89488404	89488604	+	1	NA	NA	NA	-78815	NM_008821	18630	Mm.3086	NM_008821	ENSMUSG00000035395	Pet2	PC231|PC326|Pex3	plasmacytoma expressed transcript 2	protein-coding	0.100000	0.716418	
mm_170867.1	chr2	18453669	18453869	+	1	NA	NA	NA	-60939	NM_007869	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.010000	0.482587	-31(TCCTTTATAAGC,-,0.00),-29(CTTTATAAGCGC,+,0.00)
mm_155896.1	chrX	101652618	101652818	+	1	NA	NA	NA	12500	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.000000	0.412935	
mm_82993.1	chr9	36599391	36599591	-	1	NA	NA	NA	-16856	NM_001167584	100312948	Mm.475849	NM_001167584	ENSMUSG00000091248	Gm17689	Pate-g|Pate8	predicted gene, 17689	protein-coding	0.000000	0.398010	-36(ACCTTTATAAAG,-,0.00),-34(CTTTATAAAGGG,+,0.00),-34(CTTTATAAAGGG,-,0.00)
mm_89145.1	chr10	85928985	85929185	+	1	NA	NA	NA	594	NM_001163614	67341	Mm.382315	NM_001163614	ENSMUSG00000085111	Ascl4	1700054F16Rik|bHLHa44	achaete-scute family bHLH transcription factor 4	protein-coding	0.010000	0.333333	33(GCTTAAAAATGC,+,0.00)
mm_109564.1	chr12	111966688	111966888	+	1	NA	NA	NA	189	NM_027360	70257	Mm.318	NM_027360	ENSMUSG00000021290	2010107E04Rik	9430003J03Rik|AU043134|AV124504|Mp68	RIKEN cDNA 2010107E04 gene	protein-coding	0.090000	0.686567	
mm_36694.1	chr4	96658576	96658776	-	1	NA	NA	NA	5443	NM_010007	13109	Mm.12838	NM_010007	ENSMUSG00000052520	Cyp2j5	-	cytochrome P450, family 2, subfamily j, polypeptide 5	protein-coding	0.010000	0.447761	
mm_54779.1	chr6	41541691	41541891	-	1	NA	NA	NA	20015	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.457711	-83(GCATTTATAGAG,+,0.00)
mm_38947.1	chr4	150544912	150545112	-	1	NA	NA	NA	107162	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.025000	0.552239	
mm_104692.1	chr11	97829830	97830030	-	1	NA	NA	NA	-10850	NM_001080935	68127	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0.010000	0.497512	-27(GGCCTTATATAG,-,0.00),-25(CCTTATATAGCA,+,0.00),30(CATTTTATAGAC,+,0.00)
mm_110026.1	chr12	16800590	16800790	-	1	NA	NA	NA	196	NM_015764	268527	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	0.115000	0.751244	
mm_319.1	chr1	24678473	24678673	+	1	NA	NA	NA	29	NM_026719	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.115000	0.701493	
mm_97595.1	chr11	78948233	78948433	+	1	NA	NA	NA	23042	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.025000	0.577114	
mm_159595.1	chr4	126325311	126325511	-	1	NA	NA	NA	-212	NM_011902	24084	Mm.23895	NM_011902	ENSMUSG00000028845	Tekt2	AU014974|tektin-t	tektin 2	protein-coding	0.025000	0.631841	
mm_5504.1	chr1	37429895	37430095	-	1	NA	NA	NA	108	NM_198006	76178	Mm.28085	NM_198006	ENSMUSG00000026112	Coa5	1700001A24Rik|6330578E17Rik|Pet191	cytochrome C oxidase assembly factor 5	protein-coding	0.095000	0.676617	
mm_25290.1	chr3	105815443	105815643	+	1	NA	NA	NA	-24	NR_045845	433637	Mm.331285	NR_045845	ENSMUSG00000104835	Gm5547	EG433637	predicted gene 5547	ncRNA	0.010000	0.497512	79(CCTTTTATGCTC,+,0.00)
mm_172650.1	chr8	33488365	33488565	+	1	NA	NA	NA	4154	NR_033589	628431	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	0.025000	0.512438	-29(GAGTATATAAGA,-,0.00)
mm_38352.1	chr4	137782106	137782306	-	1	NA	NA	NA	14178	NM_007431	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.015000	0.557214	
mm_67460.1	chr7	80403227	80403427	-	1	NA	NA	NA	-515	NM_011046	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.025000	0.497512	-81(AACCATAAAAGG,-,0.00)
mm_20820.1	chr2	144720504	144720704	-	1	NA	NA	NA	-103062	NM_025490	66328	Mm.45377	NM_025490	ENSMUSG00000027431	Scp2d1	1700010M22Rik	SCP2 sterol-binding domain containing 1	protein-coding	0.010000	0.472637	
mm_65652.1	chr7	28131567	28131767	-	1	NA	NA	NA	2201	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.040000	0.552239	13(TACTTTAAAGGC,-,0.00),14(ACTTTAAAGGCC,+,0.00)
mm_11039.1	chr2	27009834	27010034	+	1	NA	NA	NA	8	NM_001243239	381356	Mm.150270	NM_029862	ENSMUSG00000015488	Cacfd1	5930434B04Rik|mFwe	calcium channel flower domain containing 1	protein-coding	0.120000	0.726368	
mm_90130.1	chr10	117711635	117711835	+	1	NA	NA	NA	-977	NM_001288586	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.015000	0.482587	28(CCTTTTCAACAC,+,0.00)
mm_89782.1	chr10	101681608	101681808	+	1	NA	NA	NA	221	NM_001205098	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.015000	0.452736	
mm_28767.1	chr3	95899410	95899610	-	1	NA	NA	NA	5129	NM_011797	23831	Mm.489647	NM_011797	ENSMUSG00000038526	Car14	AW536446|Ca14	carbonic anhydrase 14	protein-coding	0.025000	0.572139	
mm_153058.1	chr19	32181229	32181429	-	1	NA	NA	NA	29684	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.015000	0.472637	
mm_122411.1	chr14	41013685	41013885	-	1	NA	NA	NA	48	NM_001316734	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.090000	0.681592	
mm_92473.1	chr10	78043578	78043778	-	1	NA	NA	NA	-68	NM_001271550	11634	Mm.35300	NM_009646	ENSMUSG00000000731	Aire	-	autoimmune regulator (autoimmune polyendocrinopathy candidiasis ectodermal dystrophy)	protein-coding	0.045000	0.527363	
mm_12405.1	chr2	70508571	70508771	+	1	NA	NA	NA	-148	NM_025744	66748	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	0.020000	0.442786	
mm_24452.1	chr3	90613052	90613252	+	1	NA	NA	NA	258	NM_011313	20200	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0.075000	0.656716	
mm_36633.1	chr4	92339745	92339945	-	1	NA	NA	NA	-192624	NM_027034	69314	Mm.55891	NM_027034	ENSMUSG00000028533	Izumo3	1700011H22Rik	IZUMO family member 3	protein-coding	0.010000	0.283582	59(TAGTTTAAAAAG,-,0.00)
mm_9764.1	chr1	180906797	180906997	-	1	NA	NA	NA	2623	NM_133705	69051	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	0.040000	0.606965	
mm_36673.1	chr4	96141054	96141254	-	1	NA	NA	NA	-2	NM_001100182	242546	Mm.302562	NM_001100182	ENSMUSG00000081225	Cyp2j12	BB197342|Cyp2j12-ps|OTTMUSG00000007939	cytochrome P450, family 2, subfamily j, polypeptide 12	protein-coding	0.015000	0.522388	
mm_74660.1	chr8	13550150	13550350	-	1	NA	NA	NA	12211	NM_025601	66501	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.020000	0.517413	
mm_172307.1	chr7	104353432	104353632	+	1	NA	NA	NA	-174	NM_001146007	319236	Mm.425502	NM_175677	ENSMUSG00000057143	Trim12c	9230105E10Rik|Trim12-2	tripartite motif-containing 12C	protein-coding	0.000000	0.512438	
mm_125141.1	chr15	30539490	30539690	+	1	NA	NA	NA	366997	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.000000	0.328358	
mm_172402.1	chr7	144791861	144792061	+	1	NA	NA	NA	-46651	NM_008007	14174	Mm.4947	NM_008007	ENSMUSG00000031074	Fgf3	Fgf-3|Int-2|Int-P	fibroblast growth factor 3	protein-coding	0.095000	0.537313	
mm_62691.1	chr7	110061710	110061910	+	1	NA	NA	NA	108	NM_009281	20841	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0.080000	0.601990	
mm_161896.1	chr18	44158958	44159158	-	1	NA	NA	NA	827	NM_001281470	100042855	Mm.479515	NM_001165950	ENSMUSG00000069385	Gm10267	ENSMUSG00000069385|Vtlgl1	predicted gene 10267	protein-coding	0.000000	0.328358	
mm_78345.1	chr9	25299400	25299600	+	1	NA	NA	NA	47061	NM_001205367	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.000000	0.313433	
mm_85882.1	chr9	111017064	111017264	-	1	NA	NA	NA	-2128	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.005000	0.442786	-35(GATTATAAAAGA,-,0.00)
mm_114927.1	chr13	95696808	95697008	+	1	NA	NA	NA	-12	NM_010170	14064	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	0.005000	0.532338	
mm_50188.1	chr6	41684290	41684490	+	1	NA	NA	NA	-41	NM_029671	76606	Mm.272520	NM_029671	ENSMUSG00000029867	1700034O15Rik	-	RIKEN cDNA 1700034O15 gene	protein-coding	0.010000	0.492537	
mm_151000.1	chr19	46653937	46654137	+	1	NA	NA	NA	18963	NM_007809	13074	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.025000	0.606965	
mm_95617.1	chr11	53519827	53520027	+	1	NA	NA	NA	191	NM_001347496	20362	Mm.274399	NM_033144	ENSMUSG00000018398	Sept8	AW046166|Sepl	septin 8	protein-coding	0.155000	0.776119	
mm_59376.1	chr7	25754814	25755014	+	1	NA	NA	NA	-194	NM_144922	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.090000	0.611940	
mm_76347.1	chr8	84727538	84727738	-	1	NA	NA	NA	26181	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.010000	0.512438	
mm_165486.1	chr2	164334167	164334367	+	1	NA	NA	NA	1502	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.015000	0.482587	
mm_134648.1	chr16	21947457	21947657	-	1	NA	NA	NA	-5	NR_037773	66664	Mm.46480	NM_025693	ENSMUSG00000022856	Tmem41a	2900010K02Rik|5730578N08Rik	transmembrane protein 41a	protein-coding	0.145000	0.761194	
mm_109774.1	chr12	118848300	118848500	+	1	NA	NA	NA	2071	NM_177082	320145	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.035000	0.592040	
mm_127511.1	chr15	101711501	101711701	+	1	NA	NA	NA	1290	NM_027011	110308	Mm.451847	NM_027011	ENSMUSG00000061527	Krt5	3300001P10Rik|AW146334|CK5|K5|Krt2-5|Tfip8	keratin 5	protein-coding	0.025000	0.572139	
mm_25040.1	chr3	98290799	98290999	+	1	NA	NA	NA	10468	NM_008256	15360	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.000000	0.407960	
mm_129979.1	chr15	86019699	86019899	-	1	NA	NA	NA	13978	NM_009886	12614	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	0.005000	0.388060	
mm_4871.1	chr1	187803416	187803616	+	1	NA	NA	NA	-194311	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.000000	0.422886	
mm_100340.1	chr11	118393344	118393544	+	1	NA	NA	NA	8487	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.015000	0.507463	
mm_24050.1	chr3	87906288	87906488	+	1	NA	NA	NA	67	NM_008231	15191	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0.145000	0.726368	
mm_6345.1	chr1	71640311	71640511	-	1	NA	NA	NA	12823	NM_010233	14268	Mm.193099	NM_010233	ENSMUSG00000026193	Fn1	E330027I09|Fn|Fn-1	fibronectin 1	protein-coding	0.025000	0.512438	
mm_94460.1	chr11	6416188	6416388	+	1	NA	NA	NA	418	NM_008907	268373	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	0.120000	0.761194	
mm_42917.1	chr5	122707874	122708074	+	1	NA	NA	NA	430	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.055000	0.621891	
mm_168862.1	chr12	30911440	30911640	-	1	NA	NA	NA	72	NM_021330	11431	Mm.359831	NM_021330	ENSMUSG00000044573	Acp1	4632432E04Rik|AI427468|Acp-1|LMW-PTP|Lmptp	acid phosphatase 1, soluble	protein-coding	0.095000	0.611940	
mm_91771.1	chr10	51590385	51590585	-	1	NA	NA	NA	-25	NM_029894	77296	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0.045000	0.611940	
mm_62115.1	chr7	96644024	96644224	+	1	NA	NA	NA	157425	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	ENSMUSG00000053049|OTTMUSG00000021246	predicted gene 15413	ncRNA	0.040000	0.582090	
mm_88099.1	chr10	68723852	68724052	+	1	NA	NA	NA	206	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.050000	0.646766	
mm_122409.1	chr14	41008193	41008393	-	1	NA	NA	NA	-27	NM_001316740	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.005000	0.582090	
mm_83681.1	chr9	50475618	50475818	-	1	NA	NA	NA	-18807	NM_029639	76509	Mm.29959	NM_029639	ENSMUSG00000032068	Plet1	0610037B23Rik|1600029D21Rik|AA407923|AU043048	placenta expressed transcript 1	protein-coding	0.025000	0.477612	
mm_63928.1	chr7	139403695	139403895	+	1	NA	NA	NA	14686	NM_001127363	212111	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.000000	0.348259	
mm_164397.1	chr16	33819043	33819243	+	1	NA	NA	NA	-10522	NM_010580	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.010000	0.467662	
mm_118404.1	chr13	119408912	119409112	-	1	NA	NA	NA	-1	NM_008710	18115	Mm.132584	NM_008710	ENSMUSG00000025453	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.110000	0.716418	
mm_138061.1	chr17	33929806	33930006	+	1	NA	NA	NA	12	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.075000	0.691542	
mm_148431.1	chr19	3941839	3942039	+	1	NA	NA	NA	6753	NM_001161428	54445	Mm.262094	NM_019449	ENSMUSG00000036908	Unc93b1	Unc-93B1|Unc93b	unc-93 homolog B1 (C. elegans)	protein-coding	0.025000	0.562189	
mm_33798.1	chr4	134925971	134926171	+	1	NA	NA	NA	2446	NM_023665	27981	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.010000	0.407960	
mm_171471.1	chr4	145781419	145781619	+	1	NA	NA	NA	-24	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.040000	0.517413	
mm_149071.1	chr19	8871511	8871711	+	1	NA	NA	NA	52	NM_146093	225896	Mm.27839	NM_146093	ENSMUSG00000071655	Ubxn1	2B28|4930455J02Rik|D19Ertd721e|T25529	UBX domain protein 1	protein-coding	0.120000	0.741294	
mm_52453.1	chr6	113684006	113684206	+	1	NA	NA	NA	-12944	NM_001347356	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.015000	0.432836	
mm_138557.1	chr17	35267001	35267201	+	1	NA	NA	NA	3978	NM_001267808	14980	Mm.439675	NM_001267808		H2-L	H-2L	histocompatibility 2, D region locus L	protein-coding	0.000000	0.562189	
mm_54400.1	chr6	31528554	31528754	-	1	NA	NA	NA	35283	NM_013723	27205	Mm.89918	NM_013723	ENSMUSG00000025608	Podxl	AW121214|Ly102|PC|PCLP-1|Pclp1	podocalyxin-like	protein-coding	0.020000	0.527363	
mm_168024.1	chrY	90738170	90738370	+	1	NA	NA	NA	16780	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.472637	
mm_127660.1	chr15	102518351	102518551	+	1	NA	NA	NA	259	NM_009319	21357	Mm.291485	NM_009319	ENSMUSG00000023051	Tarbp2	Prbp|TRBP	TARBP2, RISC loading complex RNA binding subunit	protein-coding	0.100000	0.706468	
mm_34027.1	chr4	138057920	138058120	+	1	NA	NA	NA	64564	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.030000	0.527363	86(CTTTTTAAACGG,+,0.00)
mm_75988.1	chr8	72377834	72378034	-	1	NA	NA	NA	43540	NM_001122832	13859	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	0.000000	0.432836	
mm_11552.1	chr2	32721025	32721225	+	1	NA	NA	NA	70	NM_013781	27387	Mm.9593	NM_013781	ENSMUSG00000059013	Sh2d3c	Chat|Nsp3|Shep1	SH2 domain containing 3C	protein-coding	0.015000	0.552239	
mm_82341.1	chr9	10904759	10904959	-	1	NA	NA	NA	-84	NM_001170787	244682	Mm.187021	NM_001033359	ENSMUSG00000039488	Cntn5	6720426O10Rik|A830025P08Rik|Gm507|NB-2	contactin 5	protein-coding	0.120000	0.716418	
mm_139128.1	chr17	47505025	47505225	+	1	NA	NA	NA	74	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.075000	0.621891	
mm_145940.1	chr18	67343500	67343700	+	1	NA	NA	NA	36	NM_007702	12683	Mm.449	NM_007702	ENSMUSG00000024526	Cidea	AW212747	cell death-inducing DNA fragmentation factor, alpha subunit-like effector A	protein-coding	0.045000	0.567164	
mm_153264.1	chr19	37023112	37023312	-	1	NA	NA	NA	97133	NM_001080706	107182	Mm.295062	NM_001080706	ENSMUSG00000040565	Btaf1	AI414500|AI447930|E430027O22Rik|TAF170	B-TFIID TATA-box binding protein associated factor 1	protein-coding	0.030000	0.492537	23(CTTTTTAAACCC,+,0.00)
mm_8208.1	chr1	138123951	138124151	-	1	NA	NA	NA	51075	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.005000	0.323383	
mm_98363.1	chr11	93924391	93924591	+	1	NA	NA	NA	31292	NM_001077529	18103	Mm.1260	NM_008705	ENSMUSG00000020857	Nme2	NM23-H2|NM23B|nm23-M2	NME/NM23 nucleoside diphosphate kinase 2	protein-coding	0.020000	0.412935	
mm_114643.1	chr13	76579584	76579784	+	1	NA	NA	NA	194723	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.020000	0.507463	
mm_113528.1	chr13	37826698	37826898	+	1	NA	NA	NA	-114	NM_001177868	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.095000	0.651741	
mm_92288.1	chr10	71344788	71344988	-	1	NA	NA	NA	-39	NM_134007	52637	Mm.254114	NM_134007	ENSMUSG00000037710	Cisd1	AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding	0.140000	0.711443	
mm_82044.1	chr9	122351460	122351660	+	1	NA	NA	NA	-56	NM_026179	67469	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0.140000	0.706468	-68(GCATTAATGGTC,+,0.00)
mm_99176.1	chr11	100859399	100859599	+	1	NA	NA	NA	148	NM_011488	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.020000	0.587065	
mm_30918.1	chr4	32657037	32657237	+	1	NA	NA	NA	18	NM_001081392	100019	Mm.24627	NM_133874	ENSMUSG00000058006	Mdn1	4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135	midasin AAA ATPase 1	protein-coding	0.120000	0.646766	
mm_81722.1	chr9	112227352	112227552	+	1	NA	NA	NA	-4	NR_131053	70194	Mm.452769	NR_131053		2310075C17Rik	-	RIKEN cDNA 2310075C17 gene	ncRNA	0.050000	0.477612	
mm_14551.1	chr2	133199474	133199674	+	1	NA	NA	NA	-253538	NM_198029	241639	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0.020000	0.432836	
mm_50013.1	chr6	41062249	41062449	+	1	NA	NA	NA	-26840	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.482587	
mm_116372.1	chr13	40733880	40734080	-	1	NA	NA	NA	-157	NM_011547	21418	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.040000	0.547264	
mm_151356.1	chr19	55908356	55908556	+	1	NA	NA	NA	13135	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.045000	0.577114	
mm_96988.1	chr11	70657724	70657924	+	1	NA	NA	NA	648	NM_007933	13808	Mm.251322	NM_007933	ENSMUSG00000060600	Eno3	Eno-3|MSE	enolase 3, beta muscle	protein-coding	0.015000	0.497512	-85(CTTTTTATGGGG,+,0.00),-34(GACTCTTAAAAG,-,0.00),-33(ACTCTTAAAAGG,-,0.00),-32(CTCTTAAAAGGG,+,0.00),-31(TCTTAAAAGGGC,+,0.00)
mm_132747.1	chr16	44156332	44156532	+	1	NA	NA	NA	16623	NM_028108	72117	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	0.020000	0.383085	
mm_27991.1	chr3	82145701	82145901	-	1	NA	NA	NA	76	NM_021896	60596	Mm.143831	NM_021896	ENSMUSG00000033910	Gucy1a3	1200016O07Rik|sGC-alpha1	guanylate cyclase 1, soluble, alpha 3	protein-coding	0.050000	0.651741	
mm_53427.1	chr6	134035987	134036187	+	1	NA	NA	NA	387	NM_007961	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.060000	0.542289	
mm_95072.1	chr11	32610974	32611174	+	1	NA	NA	NA	-31481	NM_001271348	103583	Mm.28017	NM_134015	ENSMUSG00000020271	Fbxw11	2310065A07Rik|AA536858|BTRC2|BTRCP2|Fbxw1b|HOS	F-box and WD-40 domain protein 11	protein-coding	0.005000	0.472637	
mm_15621.1	chr2	161537037	161537237	+	1	NA	NA	NA	-428051	NR_126509	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0.015000	0.437811	-16(CGTTTTATAAGG,-,0.00)
mm_80487.1	chr9	78365961	78366161	+	1	NA	NA	NA	2138	NM_025274	434423	Mm.139314	NM_025274	ENSMUSG00000060461	Dppa5a	AA536857|Dppa5|Esg1|ecat2	developmental pluripotency associated 5A	protein-coding	0.020000	0.502488	
mm_4433.1	chr1	172506585	172506785	+	1	NA	NA	NA	6439	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.035000	0.502488	
mm_159842.1	chr5	135064664	135064864	-	1	NA	NA	NA	-98	NM_025375	66138	Mm.439878	NM_025375	ENSMUSG00000005378	Wbscr22	1110003N24Rik	Williams Beuren syndrome chromosome region 22	protein-coding	0.095000	0.616915	
mm_86154.1	chr9	118040223	118040423	-	1	NA	NA	NA	-199	NM_001286508	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.125000	0.706468	
mm_134519.1	chr16	19235526	19235726	-	1	NA	NA	NA	51115	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.005000	0.398010	
mm_43514.1	chr5	137103111	137103311	+	1	NA	NA	NA	12996	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.030000	0.572139	
mm_89737.1	chr10	99013835	99014035	+	1	NA	NA	NA	-93236	NM_027740	382406	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.030000	0.527363	
mm_6043.1	chr1	59710482	59710682	-	1	NA	NA	NA	5774	NR_028521	100217421		NR_028521		Snord11	MBII-95	small nucleolar RNA, C/D box 11	snoRNA	0.015000	0.447761	
mm_79101.1	chr9	46243067	46243267	+	1	NA	NA	NA	2323	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.010000	0.606965	
mm_158825.1	chrX	167854971	167855171	-	1	NA	NA	NA	6	NM_001290428	333605	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	0.015000	0.477612	
mm_53637.1	chr6	140620998	140621198	+	1	NA	NA	NA	-1565	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.025000	0.522388	-10(GTCTCTAAAGGA,-,0.00)
mm_65508.1	chr7	25754472	25754672	-	1	NA	NA	NA	129	NM_178089	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.135000	0.731343	
mm_58751.1	chr7	13309522	13309722	+	1	NA	NA	NA	-16045	NM_001168504	232889	Mm.223639	NM_001004762	ENSMUSG00000033847	Pla2g4c	D7Ertd445e	phospholipase A2, group IVC (cytosolic, calcium-independent)	protein-coding	0.010000	0.412935	
mm_135654.1	chr16	52400370	52400570	-	1	NA	NA	NA	52611	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.363184	
mm_67188.1	chr7	73940328	73940528	-	1	NA	NA	NA	73254	NM_009181	20450	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0.000000	0.487562	
mm_20548.1	chr2	131068807	131069007	-	1	NA	NA	NA	-5093	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.010000	0.432836	
mm_18699.1	chr2	71546652	71546852	-	1	NA	NA	NA	2	NM_010054	13392	Mm.3896	NM_010054	ENSMUSG00000023391	Dlx2	AW121999|Dlx-2|Tes-1	distal-less homeobox 2	protein-coding	0.080000	0.656716	
mm_14128.1	chr2	126034556	126034756	+	1	NA	NA	NA	-2	NM_008008	14178	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0.030000	0.422886	
mm_57639.1	chr6	128362608	128362808	-	1	NA	NA	NA	114	NM_001326583	72440	Mm.143908	NM_197981	ENSMUSG00000048668	Rhno1	2510047L19Rik|5930416I19Rik	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding	0.120000	0.756219	
mm_101886.1	chr11	48992168	48992368	-	1	NA	NA	NA	-22	NM_011579	21822	Mm.15793	NM_011579	ENSMUSG00000078922	Tgtp1	Gtp2|Irgb6|Mg21|Tgtp	T cell specific GTPase 1	protein-coding	0.010000	0.472637	
mm_121793.1	chr14	20082676	20082876	-	1	NA	NA	NA	396	NM_026209	67509	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0.060000	0.616915	
mm_145032.1	chr18	39306631	39306831	+	1	NA	NA	NA	180514	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.020000	0.507463	
mm_65900.1	chr7	30190030	30190230	-	1	NA	NA	NA	4918	NM_009795	12336	Mm.439782	NM_009795	ENSMUSG00000001794	Capns1	Capa-4|Capa4|Capn4|D7Ertd146e	calpain, small subunit 1	protein-coding	0.035000	0.477612	
mm_30089.1	chr3	138186616	138186816	-	1	NA	NA	NA	-3	NM_001163386	67741	Mm.383221	NM_001163385	ENSMUSG00000012042	4930579F01Rik	-	RIKEN cDNA 4930579F01 gene	protein-coding	0.005000	0.452736	
mm_103354.1	chr11	74832094	74832294	-	1	NA	NA	NA	1270	NM_010813	17428	Mm.3759	NM_010813	ENSMUSG00000000282	Mnt	Rox|bHLHd3	max binding protein	protein-coding	0.075000	0.646766	
mm_51956.1	chr6	91756407	91756607	+	1	NA	NA	NA	50886	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.010000	0.507463	
mm_119487.1	chr14	47374210	47374410	+	1	NA	NA	NA	450	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.020000	0.572139	
mm_71880.1	chr8	69811801	69812001	+	1	NA	NA	NA	3214	NM_198101	78816	Mm.324305	NM_198101	ENSMUSG00000036246	Gmip	5031419I10Rik	Gem-interacting protein	protein-coding	0.015000	0.502488	
mm_120285.1	chr14	63133248	63133448	+	1	NA	NA	NA	10886	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.020000	0.512438	
mm_6990.1	chr1	86357293	86357493	-	1	NA	NA	NA	-1066	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.000000	0.432836	-97(GGGTATAAAGGA,-,0.00)
mm_150935.1	chr19	46305818	46306018	+	1	NA	NA	NA	-12	NM_001177370	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.040000	0.616915	
mm_15636.1	chr2	163017382	163017582	+	1	NA	NA	NA	10	NM_172150	245866	Mm.34034	NM_172150	ENSMUSG00000017858	Ift52	BC037708|NGD5	intraflagellar transport 52	protein-coding	0.105000	0.686567	
mm_123794.1	chr14	70443302	70443502	-	1	NA	NA	NA	69	NM_025945	67065	Mm.20420	NM_025945	ENSMUSG00000000776	Polr3d	2810426M17Rik|44kDa|AI326118|AW489084|BN51T|RPC4|TSBN51	polymerase (RNA) III (DNA directed) polypeptide D	protein-coding	0.080000	0.631841	
mm_7781.1	chr1	131276820	131277020	-	1	NA	NA	NA	2643	NM_019777	56489	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.000000	0.567164	
mm_153355.1	chr19	40159370	40159570	-	1	NA	NA	NA	27816	NM_145499	226105	Mm.29119	NM_145499	ENSMUSG00000060613	Cyp2c70	-	cytochrome P450, family 2, subfamily c, polypeptide 70	protein-coding	0.005000	0.348259	
mm_5220.1	chr1	14227815	14228015	-	1	NA	NA	NA	82284	NM_001310459	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.000000	0.303483	71(ACCTATAAATAG,-,0.00)
mm_149252.1	chr19	10389181	10389381	+	1	NA	NA	NA	191	NM_173068	54525	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0.175000	0.810945	
mm_121237.1	chr14	103056074	103056274	+	1	NA	NA	NA	9162	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.437811	
mm_55348.1	chr6	56797424	56797624	-	1	NA	NA	NA	289	NM_145958	210973	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0.180000	0.825871	
mm_147951.1	chr18	66860372	66860572	-	1	NA	NA	NA	15	NM_016977	17202	Mm.229447	NM_016977	ENSMUSG00000047259	Mc4r	Mc4-r	melanocortin 4 receptor	protein-coding	0.045000	0.606965	
mm_33263.1	chr4	127210218	127210418	+	1	NA	NA	NA	-33466	NM_030252	80284	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	0.010000	0.427861	
mm_121708.1	chr14	15438888	15439088	-	1	NA	NA	NA	-1	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding	0.060000	0.621891	
mm_97051.1	chr11	72450605	72450805	+	1	NA	NA	NA	9327	NM_016776	18432	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	0.010000	0.567164	
mm_47330.1	chr5	122500237	122500437	-	1	NA	NA	NA	1888	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.015000	0.472637	
mm_81465.1	chr9	109875466	109875666	+	1	NA	NA	NA	-13	NM_007658	12530	Mm.307103	NM_007658	ENSMUSG00000032477	Cdc25a	D9Ertd393e	cell division cycle 25A	protein-coding	0.065000	0.552239	
mm_160852.1	chr11	55312141	55312341	-	1	NA	NA	NA	16	NM_001029988	245827	Mm.339363	NM_001029988	ENSMUSG00000055333	Fat2	EMI2|Fath2|Gm523|mKIAA0811	FAT atypical cadherin 2	protein-coding	0.020000	0.517413	
mm_154272.1	chr19	60775716	60775916	-	1	NA	NA	NA	-1419	NR_037245	100526521		NR_037245	ENSMUSG00000104890	Mir3084-1	Mir3084|mmu-mir-3084|mmu-mir-3084-1	microRNA 3084-1	ncRNA	0.000000	0.407960	
mm_70157.1	chr7	143521496	143521696	-	1	NA	NA	NA	-19072	NM_009434	22113	Mm.334344	NM_009434	ENSMUSG00000010760	Phlda2	Ipl|Tssc3	pleckstrin homology like domain, family A, member 2	protein-coding	0.005000	0.522388	
mm_63660.1	chr7	129591681	129591881	+	1	NA	NA	NA	-82	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.025000	0.502488	
mm_38075.1	chr4	134127705	134127905	-	1	NA	NA	NA	948	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.020000	0.597015	
mm_42669.1	chr5	119671345	119671545	+	1	NA	NA	NA	212	NM_011535	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.050000	0.487562	-7(TTTTTTAAAGGA,+,0.00)
mm_136879.1	chr17	13008073	13008273	+	1	NA	NA	NA	334	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.110000	0.746269	
mm_34375.1	chr4	144893561	144893761	+	1	NA	NA	NA	524	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.090000	0.646766	
mm_133466.1	chr16	89205760	89205960	+	1	NA	NA	NA	-1	NM_001163615	622935	Mm.459837	NM_001163615	ENSMUSG00000091039	Krtap20-2	1190004K03Rik|EG622935|Gm6371	keratin associated protein 20-2	protein-coding	0.005000	0.472637	-33(GCATATAAAAGG,-,0.00)
mm_99008.1	chr11	98836667	98836867	+	1	NA	NA	NA	-18	NM_001080925	268480	Mm.340766	NM_001080925	ENSMUSG00000038020	Rapgefl1	B230105J10	Rap guanine nucleotide exchange factor (GEF)-like 1	protein-coding	0.120000	0.756219	
mm_99811.1	chr11	108395787	108395987	+	1	NA	NA	NA	590	NM_013475	11818	Mm.2266	NM_013475	ENSMUSG00000000049	Apoh	B2GPI|beta-2-GPI|beta2-GPI	apolipoprotein H	protein-coding	0.030000	0.532338	-31(CCCCTTAAAGAC,+,0.00)
mm_120191.1	chr14	61598175	61598375	+	1	NA	NA	NA	49	NM_001164220	66597	Mm.491258	NM_023233	ENSMUSG00000035235	Trim13	3110001L12Rik|CAR|LEU5|RNF77|Rfp2	tripartite motif-containing 13	protein-coding	0.020000	0.507463	-72(CTTTTTATAGCC,+,0.00),-27(GCCTTTATGGAA,+,0.00)
mm_156.1	chr1	12692359	12692559	+	1	NA	NA	NA	29	NM_001198566	240725	Mm.45563	NM_172294	ENSMUSG00000016918	Sulf1	AI467640|AW121680|mKIAA1077	sulfatase 1	protein-coding	0.030000	0.552239	
mm_93405.1	chr10	107912228	107912428	-	1	NA	NA	NA	-194	NM_001177567	628870	Mm.336090	NM_001177567	ENSMUSG00000091455	Otogl	EG628870|Gm6924	otogelin-like	protein-coding	0.015000	0.487562	
mm_161697.1	chr17	23811844	23812044	+	1	NA	NA	NA	8757	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.010000	0.437811	
mm_152736.1	chr19	19000973	19001173	-	1	NA	NA	NA	44	NM_146095	225998	Mm.234641	NM_146095	ENSMUSG00000036192	Rorb	Nr1f2|RZR-beta|RZRB|Rorbeta|hstp	RAR-related orphan receptor beta	protein-coding	0.025000	0.462687	
mm_34095.1	chr4	138863465	138863665	+	1	NA	NA	NA	-96	NM_001122954	18784	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	0.025000	0.567164	
mm_101988.1	chr11	50827612	50827812	-	1	NA	NA	NA	19	NM_013922	30944	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding	0.065000	0.636816	
mm_82237.1	chr9	3258517	3258717	-	1	NA	NA	NA	-58804	NR_027988	114673	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0.005000	0.452736	
mm_142610.1	chr17	46832202	46832402	-	1	NA	NA	NA	-889	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.030000	0.507463	-1(GGCTTGAAATGG,-,0.00)
mm_79992.1	chr9	67033776	67033976	+	1	NA	NA	NA	9995	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.025000	0.552239	
mm_115744.1	chr13	17939897	17940097	-	1	NA	NA	NA	4220	NM_019491	56044	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0.000000	0.293532	
mm_164150.1	chr15	63530201	63530401	+	1	NA	NA	NA	-50693	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA	0.005000	0.427861	
mm_3435.1	chr1	150101222	150101422	+	1	NA	NA	NA	1291	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.462687	
mm_46034.1	chr5	91961355	91961555	-	1	NA	NA	NA	1101	NR_073442	68098	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0.005000	0.432836	
mm_28951.1	chr3	100476343	100476543	-	1	NA	NA	NA	12749	NM_001142952	74645	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.005000	0.348259	
mm_157592.1	chrX	53121629	53121829	-	1	NA	NA	NA	-7324	NM_019538	56096	Mm.274842	NM_019538	ENSMUSG00000061082	Plac1	DXWsu72e|Epcs26|Oosp2l	placental specific protein 1	protein-coding	0.010000	0.437811	
mm_126755.1	chr15	85803953	85804153	+	1	NA	NA	NA	7644	NM_001164626	72355	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	0.015000	0.522388	-88(CCTTAAAGATGC,+,0.00)
mm_8737.1	chr1	160212687	160212887	-	1	NA	NA	NA	105	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0.125000	0.726368	
mm_103079.1	chr11	69900781	69900981	-	1	NA	NA	NA	105	NM_001316696	70419	Mm.272859	NM_027419	ENSMUSG00000018570	2810408A11Rik	1700019L01Rik|4930470J18Rik	RIKEN cDNA 2810408A11 gene	protein-coding	0.055000	0.646766	
mm_2799.1	chr1	130851541	130851741	+	1	NA	NA	NA	-14136	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.005000	0.457711	
mm_152319.1	chr19	9931055	9931255	-	1	NA	NA	NA	-31622	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.010000	0.527363	
mm_104812.1	chr11	98941820	98942020	-	1	NA	NA	NA	2209	NM_001177303	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.015000	0.606965	
mm_42154.1	chr5	111793283	111793483	+	1	NA	NA	NA	-31655	NR_045833	269683	Mm.136946	NM_207252	ENSMUSG00000085271	E130006D01Rik	Gm16018|Gm681|OTTMUSG00000029083	RIKEN cDNA E130006D01 gene	ncRNA	0.005000	0.467662	
mm_30466.1	chr3	154094057	154094257	-	1	NA	NA	NA	120721	NM_001081263	242259	Mm.239962	NM_001081263	ENSMUSG00000028360	Slc44a5	AA117069|Gm422	solute carrier family 44, member 5	protein-coding	0.005000	0.457711	
mm_127318.1	chr15	100279853	100280053	+	1	NA	NA	NA	-884	NM_183109	75002	Mm.261400	NM_183109	ENSMUSG00000045631	Tmprss12	4930478A21Rik	transmembrane (C-terminal) protease, serine 12	protein-coding	0.015000	0.462687	-33(TTCTATAAAAAC,-,0.00)
mm_101366.1	chr11	23746702	23746902	-	1	NA	NA	NA	24168	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.000000	0.457711	
mm_9292.1	chr1	171636260	171636460	-	1	NA	NA	NA	5540	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.000000	0.437811	
mm_24228.1	chr3	88913958	88914158	+	1	NA	NA	NA	-108	NM_144898	229524	Mm.440405	NM_144898	ENSMUSG00000068922	Msto1	BC008103|mst	misato 1, mitochondrial distribution and morphology regulator	protein-coding	0.075000	0.616915	
mm_38244.1	chr4	136602490	136602690	-	1	NA	NA	NA	133	NM_133872	99982	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	0.170000	0.810945	
mm_17238.1	chr2	25587492	25587692	-	1	NA	NA	NA	-7493	NM_001005424	381353	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	-	predicted gene 996	protein-coding	0.025000	0.582090	
mm_158074.1	chrX	101264705	101264905	-	1	NA	NA	NA	-813	NM_001317221	245536	Mm.212463	NM_001033362	ENSMUSG00000090141	Gm614	-	predicted gene 614	protein-coding	0.015000	0.492537	
mm_109909.1	chr12	8479959	8480159	-	1	NA	NA	NA	19926	NM_007483	11852	Mm.687	NM_007483	ENSMUSG00000054364	Rhob	AA017882|Arh6|Arhb	ras homolog family member B	protein-coding	0.025000	0.507463	
mm_152938.1	chr19	28680135	28680335	-	1	NA	NA	NA	-158	NM_175459	226075	Mm.223508	NM_175459	ENSMUSG00000052942	Glis3	4833409N03Rik|E330013K21Rik	GLIS family zinc finger 3	protein-coding	0.065000	0.716418	
mm_70275.1	chr8	3598349	3598549	+	1	NA	NA	NA	10999	NM_001347111	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.000000	0.482587	
mm_145653.1	chr18	61129241	61129441	+	1	NA	NA	NA	11873	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.025000	0.552239	
mm_149699.1	chr19	21277612	21277812	+	1	NA	NA	NA	5434	NM_009551	22682	Mm.292405	NM_009551	ENSMUSG00000024750	Zfand5	2310057A04Rik|5830475F03Rik|AA415485|Za20d2|Zfp216	zinc finger, AN1-type domain 5	protein-coding	0.005000	0.368159	
mm_57170.1	chr6	122820756	122820956	-	1	NA	NA	NA	672	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.020000	0.626866	
mm_155065.1	chrX	42502438	42502638	+	1	NA	NA	NA	-27	NM_011364	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	0.000000	0.452736	
mm_123598.1	chr14	67780329	67780529	-	1	NA	NA	NA	35248	NR_133010	14714	Mm.358309	NM_008145	ENSMUSG00000015812	Gnrh1	Gnrh|Gnrh2|LHRH|Lhrh1|Lnrh|hpg	gonadotropin releasing hormone 1	protein-coding	0.010000	0.472637	
mm_168529.1	chr1	161035367	161035567	+	1	NA	NA	NA	301	NR_002840	14455	Mm.270065	NR_002840	ENSMUSG00000053332	Gas5	Gas-5|Mir5117|Snhg2	growth arrest specific 5	ncRNA	0.055000	0.507463	
mm_10303.1	chr2	10893179	10893379	+	1	NA	NA	NA	-279103	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.000000	0.432836	
mm_154268.1	chr19	60772621	60772821	-	1	NA	NA	NA	1664	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.030000	0.412935	6(GCATTTAAAGAT,+,0.00)
mm_7570.1	chr1	124830624	124830824	-	1	NA	NA	NA	605003	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.010000	0.368159	
mm_168364.1	chr1	11626386	11626586	-	1	NA	NA	NA	212381	NM_001160371	320492	Mm.52021	NM_177173	ENSMUSG00000057715	A830018L16Rik	-	RIKEN cDNA A830018L16 gene	protein-coding	0.055000	0.646766	
mm_66378.1	chr7	43756066	43756266	-	1	NA	NA	NA	-230	NR_077063	100504720	Mm.226595	NR_077063		2310002F09Rik	-	RIKEN cDNA 2310002F09 gene	ncRNA	0.005000	0.427861	
mm_55346.1	chr6	56784325	56784525	-	1	NA	NA	NA	13388	NM_145958	210973	Mm.57295	NM_145958	ENSMUSG00000059486	Kbtbd2	BC022962|Bklhd1|mKIAA1489	kelch repeat and BTB (POZ) domain containing 2	protein-coding	0.005000	0.373134	
mm_157841.1	chrX	74368459	74368659	-	1	NA	NA	NA	-11	NM_145405	27643	Mm.3979	NM_145405	ENSMUSG00000015290	Ubl4a	DXHXS254E|DXS254E|DXS254Eh|Gdx|Ubl4	ubiquitin-like 4A	protein-coding	0.135000	0.731343	
mm_25934.1	chr3	131368909	131369109	+	1	NA	NA	NA	-24086	NM_028943	74442	Mm.273360	NM_028943	ENSMUSG00000050931	Sgms2	4933405A16Rik|5133401H06Rik|AI854299	sphingomyelin synthase 2	protein-coding	0.015000	0.422886	
mm_76031.1	chr8	77286804	77287004	-	1	NA	NA	NA	-230152	NR_028125	70345	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.000000	0.278607	
mm_143647.1	chr17	79355566	79355766	-	1	NA	NA	NA	-575	NM_026514	260409	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	0.105000	0.706468	
mm_150972.1	chr19	46501351	46501551	+	1	NA	NA	NA	-197	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.080000	0.691542	
mm_1932.1	chr1	86110894	86111094	+	1	NA	NA	NA	976	NM_008311	15559	Mm.439747	NM_008311	ENSMUSG00000026228	Htr2b	5-HT2B|AJ012488|AV377389	5-hydroxytryptamine (serotonin) receptor 2B	protein-coding	0.015000	0.452736	
mm_77800.1	chr9	3031916	3032116	+	1	NA	NA	NA	6727	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.035000	0.353234	
mm_73523.1	chr8	107544919	107545119	+	1	NA	NA	NA	-6225	NR_029553	387158		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0.035000	0.621891	
mm_124857.1	chr15	9547728	9547928	+	1	NA	NA	NA	-17952	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.005000	0.348259	
mm_85824.1	chr9	110420814	110421014	-	1	NA	NA	NA	1106	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.005000	0.517413	
mm_146412.1	chr18	84088587	84088787	+	1	NA	NA	NA	529	NM_146090	225791	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.065000	0.587065	
mm_146555.1	chr18	6223955	6224155	-	1	NA	NA	NA	17469	NM_008448	16573	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.000000	0.363184	
mm_152508.1	chr19	11266010	11266210	-	1	NA	NA	NA	41	NM_007641	12482	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	0.010000	0.487562	
mm_118307.1	chr13	113101094	113101294	-	1	NA	NA	NA	-213	NM_010370	14938	Mm.15510	NM_010370	ENSMUSG00000023132	Gzma	AW494114|Ctla-3|Ctla3|Hf|Hf1|SE1|TSP-1|TSP1	granzyme A	protein-coding	0.015000	0.477612	
mm_160231.1	chr7	102698022	102698222	+	1	NA	NA	NA	-94	NM_146361	258358	Mm.377455	NM_146361	ENSMUSG00000073967	Olfr557	MOR18-3	olfactory receptor 557	protein-coding	0.005000	0.253731	
mm_163371.1	chr12	40446024	40446224	+	1	NA	NA	NA	71	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.145000	0.746269	
mm_104797.1	chr11	98773653	98773853	-	1	NA	NA	NA	1624	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.040000	0.606965	
mm_155897.1	chrX	101653131	101653331	+	1	NA	NA	NA	13013	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.030000	0.477612	23(ATGTTTAAAAAG,-,0.00),25(GTTTAAAAAGGC,+,0.00)
mm_166946.1	chr7	43554512	43554712	-	1	NA	NA	NA	-7758	NM_001008549	210104	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0.005000	0.547264	
mm_47528.1	chr5	124186932	124187132	-	1	NA	NA	NA	150	NM_001289472	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.035000	0.621891	
mm_61423.1	chr7	73618722	73618922	+	1	NA	NA	NA	-60427	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.060000	0.562189	
mm_8657.1	chr1	156474140	156474340	-	1	NA	NA	NA	88	NM_009230	20652	Mm.28099	NM_009230	ENSMUSG00000026600	Soat1	8430426K15Rik|ACAT-1|AW550831|Acact|ald|hid	sterol O-acyltransferase 1	protein-coding	0.130000	0.726368	
mm_91668.1	chr10	43174406	43174606	-	1	NA	NA	NA	24	NM_175407	109205	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis-binding protein homolog (Drosophila)	protein-coding	0.130000	0.746269	
mm_153276.1	chr19	37177930	37178130	-	1	NA	NA	NA	-1967	NM_001290826	208922	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.040000	0.462687	
mm_85962.1	chr9	112139255	112139455	-	1	NA	NA	NA	-20644	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.010000	0.388060	
mm_35832.1	chr4	48039714	48039914	-	1	NA	NA	NA	-5491	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.015000	0.492537	
mm_146608.1	chr18	9866673	9866873	-	1	NA	NA	NA	-91407	NM_153552	225160	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	0.020000	0.447761	
mm_40661.1	chr5	65250703	65250903	+	1	NA	NA	NA	51107	NM_153391	213081	Mm.127550	NM_153391	ENSMUSG00000037890	Wdr19	C330027H04Rik|D330023L08Rik|DYF2|Ift144|PWDMP|mKIAA1638	WD repeat domain 19	protein-coding	0.020000	0.462687	-36(GGCTTTTAAAAA,-,0.00),-35(GCTTTTAAAAAG,+,0.00),-35(GCTTTTAAAAAG,-,0.00)
mm_58736.1	chr7	13030368	13030568	+	1	NA	NA	NA	4309	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.015000	0.557214	
mm_25430.1	chr3	107895775	107895975	+	1	NA	NA	NA	21	NM_010360	14866	Mm.282351	NM_010360	ENSMUSG00000004032	Gstm5	-	glutathione S-transferase, mu 5	protein-coding	0.085000	0.621891	
mm_119314.1	chr14	36968773	36968973	+	1	NA	NA	NA	-109	NM_027045	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.095000	0.666667	
mm_98169.1	chr11	87751701	87751901	+	1	NA	NA	NA	-5063	NR_029555	387160		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.010000	0.542289	
mm_84090.1	chr9	58226942	58227142	-	1	NA	NA	NA	5892	NR_105806	102466639		NR_105806	ENSMUSG00000098886	Mir6385	Gm28021|mmu-mir-6385	microRNA 6385	ncRNA	0.020000	0.487562	
mm_104479.1	chr11	95569853	95570053	-	1	NA	NA	NA	17745	NM_033217	18053	Mm.283893	NM_033217	ENSMUSG00000000120	Ngfr	LNGFR|Tnfrsf16|p75|p75NGFR|p75NTR	nerve growth factor receptor (TNFR superfamily, member 16)	protein-coding	0.010000	0.562189	
mm_13085.1	chr2	91208777	91208977	+	1	NA	NA	NA	5965	NM_007387	11432	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.000000	0.373134	-30(CTCCTTTAAAGA,-,0.00),-29(TCCTTTAAAGAG,+,0.00),-29(TCCTTTAAAGAG,-,0.00)
mm_103970.1	chr11	84518953	84519153	-	1	NA	NA	NA	-5552	NM_019816	56321	Mm.257482	NM_019816	ENSMUSG00000018697	Aatf	4933415H02Rik|5830465M17Rik|Che-1|Trb	apoptosis antagonizing transcription factor	protein-coding	0.025000	0.492537	
mm_142060.1	chr17	35670396	35670596	-	1	NA	NA	NA	-2904	NM_175137	68915	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	0.015000	0.587065	
mm_42876.1	chr5	122241067	122241267	+	1	NA	NA	NA	23293	NR_104441	654470	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.005000	0.532338	
mm_98020.1	chr11	84957687	84957887	+	1	NA	NA	NA	33	NM_007607	12351	Mm.1641	NM_007607	ENSMUSG00000000805	Car4	AW456718|Ca4	carbonic anhydrase 4	protein-coding	0.060000	0.592040	
mm_53345.1	chr6	129349644	129349844	+	1	NA	NA	NA	-500	NM_177686	232413	Mm.90241	NM_177686	ENSMUSG00000053063	Clec12a	CLL-1|D230024O04|KLRL1|Micl	C-type lectin domain family 12, member a	protein-coding	0.000000	0.492537	
mm_132361.1	chr16	34690612	34690812	+	1	NA	NA	NA	96	NM_172824	239839	Mm.272045	NM_172824	ENSMUSG00000022833	Ccdc14	G630039H03Rik	coiled-coil domain containing 14	protein-coding	0.075000	0.577114	-75(CCTTTTAGCGCC,+,0.00)
mm_139999.1	chr17	72941208	72941408	+	1	NA	NA	NA	23003	NM_029999	77889	Mm.154109	NM_029999	ENSMUSG00000024063	Lbh	1810009F10Rik|6720416L16Rik	limb-bud and heart	protein-coding	0.020000	0.542289	32(CCCTTTATGGAC,+,0.00),54(CCTTTTAAATTC,+,0.00)
mm_122674.1	chr14	52008777	52008977	-	1	NA	NA	NA	5681	NM_001253695	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.035000	0.636816	
mm_110470.1	chr12	51829503	51829703	-	1	NA	NA	NA	-67	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.180000	0.835821	
mm_136752.1	chr17	8526911	8527111	+	1	NA	NA	NA	210	NM_001290707	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.025000	0.641791	
mm_111520.1	chr12	100159537	100159737	-	1	NA	NA	NA	16	NM_001290303	217827	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0.055000	0.572139	-85(CCTTAAAGAGTG,+,0.00)
mm_76312.1	chr8	84661498	84661698	-	1	NA	NA	NA	1254	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.055000	0.636816	
mm_67218.1	chr7	74482025	74482225	-	1	NA	NA	NA	72655	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.000000	0.457711	
mm_101794.1	chr11	46195936	46196136	-	1	NA	NA	NA	25949	NR_106098	102465715		NR_106098	ENSMUSG00000099331	Mir7239	Gm27504|mmu-mir-7239	microRNA 7239	ncRNA	0.015000	0.442786	
mm_78384.1	chr9	28256887	28257087	+	1	NA	NA	NA	465718	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.000000	0.378109	-6(TTTTTTAAAGCC,+,0.00)
mm_162326.1	chr1	40084614	40084814	+	1	NA	NA	NA	-54	NM_010555	16178	Mm.1349	NM_010555	ENSMUSG00000026073	Il1r2	CD121b|Il1r-2	interleukin 1 receptor, type II	protein-coding	0.005000	0.557214	
mm_144594.1	chr18	32162966	32163166	+	1	NA	NA	NA	-23	NM_011946	26405	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0.165000	0.746269	
mm_103188.1	chr11	70615551	70615751	-	1	NA	NA	NA	-243	NM_001145537	668433	Mm.425687	NM_001145537	ENSMUSG00000087279	4930544D05Rik	-	RIKEN cDNA 4930544D05 gene	protein-coding	0.070000	0.582090	
mm_71810.1	chr8	68880616	68880816	+	1	NA	NA	NA	161	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.055000	0.631841	-93(CCCCTTTAAAGG,-,0.00),-92(CCCTTTAAAGGT,+,0.00),-92(CCCTTTAAAGGT,-,0.00),-91(CCTTTAAAGGTT,+,0.00)
mm_109944.1	chr12	11326329	11326529	-	1	NA	NA	NA	26542	NR_106136	102465775		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.020000	0.427861	
mm_136885.1	chr17	13008606	13008806	+	1	NA	NA	NA	867	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.020000	0.452736	
mm_57889.1	chr6	131368005	131368205	-	1	NA	NA	NA	20345	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.020000	0.502488	
mm_719.1	chr1	42695715	42695915	+	1	NA	NA	NA	-990	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.065000	0.582090	
mm_76897.1	chr8	105774241	105774441	-	1	NA	NA	NA	-15734	NM_027469	70575	Mm.40954	NM_027469	ENSMUSG00000013150	Gfod2	5730466C23Rik	glucose-fructose oxidoreductase domain containing 2	protein-coding	0.030000	0.601990	
mm_65754.1	chr7	28598058	28598258	-	1	NA	NA	NA	26	NM_027470	70584	Mm.21876	NM_027470	ENSMUSG00000030602	Pak4	5730488L07Rik|AW555722|mKIAA1142	p21 protein (Cdc42/Rac)-activated kinase 4	protein-coding	0.110000	0.716418	
mm_101462.1	chr11	30279354	30279554	-	1	NA	NA	NA	-59682	NM_175836	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.020000	0.457711	
mm_58557.1	chr7	4740879	4741079	+	1	NA	NA	NA	852	NM_001115018	232811	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	0.015000	0.482587	
mm_31857.1	chr4	78773607	78773807	+	1	NA	NA	NA	179660	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA	0.025000	0.427861	
mm_59817.1	chr7	29179476	29179676	+	1	NA	NA	NA	1097	NM_026545	57296	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	0.015000	0.487562	
mm_171683.1	chr4	57956336	57956536	-	1	NA	NA	NA	-25	NM_011660	22166	Mm.260618	NM_011660	ENSMUSG00000028367	Txn1	ADF|AW550880|Trx1|Txn	thioredoxin 1	protein-coding	0.115000	0.756219	
mm_127801.1	chr15	3995145	3995345	-	1	NA	NA	NA	507	NM_145930	106064	Mm.21299	NM_145930	ENSMUSG00000041935	AW549877	AI195826	expressed sequence AW549877	protein-coding	0.010000	0.293532	
mm_92267.1	chr10	71158872	71159072	-	1	NA	NA	NA	718	NM_031397	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	BicC family RNA binding protein 1	protein-coding	0.030000	0.582090	
mm_52828.1	chr6	121359403	121359603	+	1	NA	NA	NA	12806	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.010000	0.447761	
mm_146404.1	chr18	83124619	83124819	+	1	NA	NA	NA	201165	NR_045361	70960	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0.020000	0.542289	
mm_80159.1	chr9	70956822	70957022	+	1	NA	NA	NA	-4701	NM_001324472	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.000000	0.442786	
mm_168338.1	chr11	11932360	11932560	-	1	NA	NA	NA	-34316	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.025000	0.502488	
mm_64637.1	chr7	3898036	3898236	-	1	NA	NA	NA	14	NM_001289428	18729	Mm.326531	NM_008848		Pira6	12M1|Pira10|p91B	paired-Ig-like receptor A6	protein-coding	0.010000	0.567164	
mm_102248.1	chr11	55109638	55109838	-	1	NA	NA	NA	11753	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.005000	0.487562	
mm_72910.1	chr8	90954988	90955188	+	1	NA	NA	NA	22839	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.020000	0.442786	
mm_158829.1	chrX	168123162	168123362	-	1	NA	NA	NA	-265	NM_001290427	333605	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	0.060000	0.686567	
mm_61611.1	chr7	80040150	80040350	+	1	NA	NA	NA	14022	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.000000	0.417910	
mm_36270.1	chr4	63728714	63728914	-	1	NA	NA	NA	16299	NM_177371	326623	Mm.208152	NM_177371	ENSMUSG00000050395	Tnfsf15	Tl1|Tl1a|Tnlg1b|Vegi	tumor necrosis factor (ligand) superfamily, member 15	protein-coding	0.000000	0.358209	
mm_54094.1	chr6	16836892	16837092	-	1	NA	NA	NA	61449	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.005000	0.388060	
mm_54714.1	chr6	39810771	39810971	-	1	NA	NA	NA	65	NM_010270	14548	Mm.377071	NM_010270	ENSMUSG00000029918	Mrps33	AI841153|CGI-139|Gdap3|MRP-S33|PTD003	mitochondrial ribosomal protein S33	protein-coding	0.085000	0.676617	
mm_109033.1	chr12	104100924	104101124	+	1	NA	NA	NA	-89	NM_172953	268591	Mm.73172	NM_172953	ENSMUSG00000041550	Serpina5	4933415L04|PAI-3|Pci	serine (or cysteine) peptidase inhibitor, clade A, member 5	protein-coding	0.015000	0.457711	50(CCTTTTATCGGG,+,0.00)
mm_24924.1	chr3	96525106	96525306	+	1	NA	NA	NA	21	NM_027126	69585	Mm.171314	NM_027126	ENSMUSG00000038403	Hfe2	2310035L15Rik|5230400G09Rik|AI414844|AI789733|DL-M|HJV|Rgmc|hemojuvelin	hemochromatosis type 2 (juvenile)	protein-coding	0.010000	0.582090	
mm_69381.1	chr7	131321982	131322182	-	1	NA	NA	NA	210	NM_008411	16433	Mm.142717	NM_008411	ENSMUSG00000040205	Cuzd1	Erg-1|Itmap1|Uo-44|Usg|Utczp	CUB and zona pellucida-like domains 1	protein-coding	0.015000	0.537313	
mm_154258.1	chr19	60768752	60768952	-	1	NA	NA	NA	5533	NR_034047	100217439		NR_034047		Snora19	MBI-51	small nucleolar RNA, H/ACA box 19	snoRNA	0.030000	0.437811	
mm_94487.1	chr11	6637141	6637341	+	1	NA	NA	NA	1408	NM_011709	22373	Mm.268094	NM_011709	ENSMUSG00000000381	Wap	-	whey acidic protein	protein-coding	0.030000	0.572139	
mm_47111.1	chr5	119527854	119528054	-	1	NA	NA	NA	52404	NR_045702	100993	Mm.381453	NR_045702	ENSMUSG00000087516	AW549542	-	expressed sequence AW549542	ncRNA	0.010000	0.492537	
mm_92519.1	chr10	78574806	78575006	-	1	NA	NA	NA	406	NM_173751	216136	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0.050000	0.557214	
mm_114597.1	chr13	75765021	75765221	+	1	NA	NA	NA	57637	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.010000	0.442786	
mm_59295.1	chr7	25077457	25077657	+	1	NA	NA	NA	311	NM_175477	232976	Mm.41568	NM_175477	ENSMUSG00000045252	Zfp574	A630056B21Rik|Znf574	zinc finger protein 574	protein-coding	0.110000	0.761194	
mm_164724.1	chr17	57080132	57080332	+	1	NA	NA	NA	-1722	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.015000	0.562189	
mm_46806.1	chr5	113077057	113077257	-	1	NA	NA	NA	4427	NM_001159650	12962	Mm.378899	NM_021352	ENSMUSG00000029352	Crybb3	AI852419	crystallin, beta B3	protein-coding	0.010000	0.477612	
mm_71521.1	chr8	46847108	46847308	+	1	NA	NA	NA	107463	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.005000	0.253731	
mm_70647.1	chr8	14270625	14270825	+	1	NA	NA	NA	174850	NM_172910	244310	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	discs, large (Drosophila) homolog-associated protein 2	protein-coding	0.010000	0.333333	
mm_135198.1	chr16	36532077	36532277	-	1	NA	NA	NA	29957	NM_013803	12374	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.005000	0.557214	
mm_85710.1	chr9	108190286	108190486	-	1	NA	NA	NA	-3	NM_007567	12217	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	0.155000	0.776119	
mm_40453.1	chr5	53603869	53604069	+	1	NA	NA	NA	13483	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.015000	0.437811	80(GTTTTTAAACTG,+,0.00)
mm_62149.1	chr7	97131081	97131281	+	1	NA	NA	NA	49430	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.010000	0.537313	
mm_140553.1	chr17	7765165	7765365	-	1	NA	NA	NA	39709	NM_001081416	68655	Mm.379161	NM_001081416	ENSMUSG00000071984	Fndc1	1110027O12Rik|1110051A18Rik|mKIAA1866	fibronectin type III domain containing 1	protein-coding	0.015000	0.557214	
mm_56342.1	chr6	92860402	92860602	-	1	NA	NA	NA	40939	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	0.000000	0.393035	31(TCTTATAAACAG,+,0.00)
mm_126859.1	chr15	89286855	89287055	+	1	NA	NA	NA	18777	NR_105924	102465981		NR_105924	ENSMUSG00000098442	Mir6959	Gm27807|mmu-mir-6959	microRNA 6959	ncRNA	0.010000	0.427861	
mm_155204.1	chrX	56731662	56731862	+	1	NA	NA	NA	1	NM_010211	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.125000	0.786070	
mm_73490.1	chr8	107056825	107057025	+	1	NA	NA	NA	48	NR_028367	66164	Mm.334789	NM_025391	ENSMUSG00000031917	Nip7	1110017C15Rik|6330509M23Rik|AA408773|AA410017|PEachy	NIP7, nucleolar pre-rRNA processing protein	protein-coding	0.075000	0.601990	
mm_117412.1	chr13	74062189	74062389	-	1	NA	NA	NA	-4	NM_028959	74470	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	0.105000	0.656716	
mm_131384.1	chr16	14172166	14172366	+	1	NA	NA	NA	8991	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.005000	0.368159	
mm_44112.1	chr5	149412018	149412218	+	1	NA	NA	NA	312	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.095000	0.696517	
mm_17092.1	chr2	23036052	23036252	-	1	NA	NA	NA	4089	NM_001077192	11308	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.000000	0.373134	
mm_68987.1	chr7	126592779	126592979	-	1	NA	NA	NA	2031	NM_145636	246779	Mm.222632	NM_145636	ENSMUSG00000044701	Il27	IL-27|IL-27p28|Il30|p28	interleukin 27	protein-coding	0.005000	0.562189	
mm_74487.1	chr8	4779355	4779555	-	1	NA	NA	NA	79	NM_011369	20419	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	0.070000	0.587065	
mm_95067.1	chr11	32554210	32554410	+	1	NA	NA	NA	21044	NM_009288	20868	Mm.8235	NM_009288	ENSMUSG00000020272	Stk10	Gek1|Lok|mKIAA4026	serine/threonine kinase 10	protein-coding	0.010000	0.467662	-41(GTCTATTAAAAG,-,0.00)
mm_148538.1	chr19	4603036	4603236	+	1	NA	NA	NA	8817	NM_008797	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.040000	0.577114	
mm_155565.1	chrX	75915008	75915208	+	1	NA	NA	NA	-39926	NM_001346519	102866	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	0.030000	0.462687	30(GTCCCTTAAAGG,-,0.00),32(CCCTTAAAGGAC,+,0.00)
mm_79725.1	chr9	62122890	62123090	+	1	NA	NA	NA	-396	NR_039595	100628602		NR_039595	ENSMUSG00000092696	Mir5133	mir-5133|mmu-mir-5133|mu-mir-5133	microRNA 5133	ncRNA	0.055000	0.517413	
mm_75602.1	chr8	61760321	61760521	-	1	NA	NA	NA	-323	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.020000	0.517413	
mm_61640.1	chr7	80294461	80294661	+	1	NA	NA	NA	110	NM_001285998	233406	Mm.227274	NM_145150	ENSMUSG00000038943	Prc1	D7Ertd348e	protein regulator of cytokinesis 1	protein-coding	0.080000	0.621891	
mm_30703.1	chr4	11765177	11765377	+	1	NA	NA	NA	7120	NM_019753	12557	Mm.33402	NM_019753	ENSMUSG00000028217	Cdh17	HPT-1|HPT-1/LI	cadherin 17	protein-coding	0.025000	0.467662	
mm_147554.1	chr18	54957682	54957882	-	1	NA	NA	NA	32398	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.010000	0.537313	-74(GGGCCTTTAAGG,-,0.00),-73(GGCCTTTAAGGC,-,0.00),-72(GCCTTTAAGGCT,+,0.00)
mm_113831.1	chr13	47101930	47102130	+	1	NA	NA	NA	4191	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.010000	0.353234	-82(TCCCATAAAAGC,-,0.00)
mm_156967.1	chrX	169996970	169997170	+	1	NA	NA	NA	-18153	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.130000	0.761194	
mm_2840.1	chr1	131573745	131573945	+	1	NA	NA	NA	-25269	NM_011924	26361	Mm.89986	NM_011924	ENSMUSG00000026432	Avpr1b	AVPR3|V3/V1b|VIBR|VPR3	arginine vasopressin receptor 1B	protein-coding	0.040000	0.552239	
mm_817.1	chr1	46088778	46088978	+	1	NA	NA	NA	22140	NM_001160386	227058	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	0.075000	0.726368	
mm_96720.1	chr11	69665593	69665793	+	1	NA	NA	NA	477	NM_001291058	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.010000	0.567164	
mm_92438.1	chr10	77211047	77211247	-	1	NA	NA	NA	-44617	NM_009929	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.000000	0.512438	
mm_4438.1	chr1	172506810	172507010	+	1	NA	NA	NA	6664	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.000000	0.532338	
mm_137181.1	chr17	23816181	23816381	+	1	NA	NA	NA	12828	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.040000	0.462687	
mm_44987.1	chr5	37624740	37624940	-	1	NA	NA	NA	92313	NM_022416	64293	Mm.103714	NM_022416	ENSMUSG00000029123	Stk32b	2510009F08Rik|STKG6|Stk32|YANK2	serine/threonine kinase 32B	protein-coding	0.000000	0.457711	
mm_104726.1	chr11	98325971	98326171	-	1	NA	NA	NA	3574	NM_010895	18013	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0.070000	0.547264	
mm_149735.1	chr19	22040768	22040968	+	1	NA	NA	NA	-98249	NM_001035239	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.020000	0.562189	
mm_86125.1	chr9	116175129	116175329	-	1	NA	NA	NA	134	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.125000	0.721393	
mm_44521.1	chr5	24391853	24392053	-	1	NA	NA	NA	190	NM_001002897	213948	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0.030000	0.611940	
mm_44978.1	chr5	36827822	36828022	-	1	NA	NA	NA	2727	NM_008550	17160	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0.025000	0.537313	
mm_3747.1	chr1	155742412	155742612	+	1	NA	NA	NA	-485	NM_010712	16872	Mm.103624	NM_010712	ENSMUSG00000026468	Lhx4	A330062J17Rik|Gsh-4|Gsh4	LIM homeobox protein 4	protein-coding	0.090000	0.721393	
mm_98409.1	chr11	94352106	94352306	+	1	NA	NA	NA	24205	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.060000	0.601990	
mm_161134.1	chr13	3837758	3837958	+	1	NA	NA	NA	101	NM_020036	80796	Mm.21075	NM_020036	ENSMUSG00000033765	Calm4	2310037J09Rik|AI649108|DD112|Scarf	calmodulin 4	protein-coding	0.015000	0.512438	
mm_164392.1	chr16	33725498	33725698	+	1	NA	NA	NA	41132	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629|OTTMUSG00000027315	heart development protein with EGF-like domains 1	protein-coding	0.075000	0.651741	
mm_105275.1	chr11	102407392	102407592	-	1	NA	NA	NA	25	NM_026542	68066	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.165000	0.800995	
mm_164655.1	chr17	36058354	36058554	-	1	NA	NA	NA	-83	NM_001199967	100529082	Mm.484641	NM_001199967	ENSMUSG00000079492	Gm11127	ENSMUSG00000079492	predicted gene 11127	protein-coding	0.000000	0.482587	10(CCCTAGAAAAGG,-,0.00)
mm_24909.1	chr3	96221023	96221223	+	1	NA	NA	NA	51	NM_178214	319190	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	0.030000	0.462687	
mm_81911.1	chr9	120091303	120091503	+	1	NA	NA	NA	-730	NM_007720	12776	Mm.442098	NM_007720	ENSMUSG00000042262	Ccr8	C-C|C-C CKR-8|CC-CKR-8|CCR-8|CKR-8|Cmkbr8|mCCR8	chemokine (C-C motif) receptor 8	protein-coding	0.015000	0.497512	
mm_32629.1	chr4	114986574	114986774	+	1	NA	NA	NA	554	NM_025647	66588	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	0.055000	0.572139	
mm_71110.1	chr8	35672263	35672463	+	1	NA	NA	NA	-83343	NR_040376	100504714	Mm.381744	NR_040376	ENSMUSG00000097357	Gm16793	-	predicted gene, 16793	ncRNA	0.010000	0.472637	
mm_28773.1	chr3	95928780	95928980	-	1	NA	NA	NA	-377	NM_001253758	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.045000	0.522388	17(TGGTCTTAAAGC,-,0.00)
mm_69933.1	chr7	142060946	142061146	-	1	NA	NA	NA	-12	NM_028308	101513	Mm.53259	NM_028308	ENSMUSG00000025147	Mob2	1110017M21Rik|2700078K21Rik|AI256456|Mmh	MOB kinase activator 2	protein-coding	0.160000	0.756219	
mm_95242.1	chr11	44617522	44617722	+	1	NA	NA	NA	-478	NM_001290711	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.030000	0.427861	
mm_66452.1	chr7	44869576	44869776	-	1	NA	NA	NA	112	NM_133949	84113	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0.145000	0.761194	
mm_34705.1	chr4	152108084	152108284	+	1	NA	NA	NA	-7750	NM_001291010	85030	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0.040000	0.631841	-53(GGTCCTAAAAGG,-,0.00)
mm_132714.1	chr16	43506344	43506544	+	1	NA	NA	NA	-86248	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	OTTMUSG00000025617	predicted gene 15713	ncRNA	0.020000	0.527363	
mm_101220.1	chr11	20153623	20153823	-	1	NA	NA	NA	-40772	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.005000	0.512438	-88(CCCCTTTAAAAG,-,0.00),-87(CCCTTTAAAAGT,-,0.00),-86(CCTTTAAAAGTG,+,0.00)
mm_18457.1	chr2	61593493	61593693	-	1	NA	NA	NA	496	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.080000	0.582090	
mm_45602.1	chr5	75043160	75043360	-	1	NA	NA	NA	1381	NM_028850	74277	Mm.239814	NM_028850	ENSMUSG00000029229	Chic2	1700081B18Rik|4930502K01Rik|BTL	cysteine-rich hydrophobic domain 2	protein-coding	0.020000	0.402985	
mm_72527.1	chr8	83980432	83980632	+	1	NA	NA	NA	3649	NM_001277898	18747	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0.005000	0.537313	-90(GGCTATTAATAC,-,0.00)
mm_111145.1	chr12	81817170	81817370	-	1	NA	NA	NA	-36100	NM_001174107	338372	Mm.35284	NM_177395	ENSMUSG00000042724	Map3k9	E130314H24Rik|Mlk1|Prke1	mitogen-activated protein kinase kinase kinase 9	protein-coding	0.015000	0.522388	
mm_10945.1	chr2	25543333	25543533	+	1	NA	NA	NA	3507	NM_001290413	22030	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	0.035000	0.482587	
mm_156883.1	chrX	166344749	166344949	+	1	NA	NA	NA	296	NM_001177960	14758	Mm.222320	NM_023122	ENSMUSG00000031342	Gpm6b	AI593561|Gpm6|M6B	glycoprotein m6b	protein-coding	0.030000	0.497512	-38(GTCTTTATGGAC,+,0.00)
mm_148500.1	chr19	4193016	4193216	+	1	NA	NA	NA	942	NM_031868	19045	Mm.1970	NM_031868	ENSMUSG00000040385	Ppp1ca	Ppp1c|dism2	protein phosphatase 1, catalytic subunit, alpha isoform	protein-coding	0.020000	0.502488	
mm_125500.1	chr15	55255682	55255882	+	1	NA	NA	NA	-51968	NM_181277	12818	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.010000	0.388060	
mm_10064.1	chr1	193509929	193510129	-	1	NA	NA	NA	-2499	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.010000	0.477612	30(CCCTATAGAGCA,+,0.00)
mm_107175.1	chr12	24831521	24831721	+	1	NA	NA	NA	22	NM_001083341	67216	Mm.167671	NM_026037	ENSMUSG00000020646	Mboat2	2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2	membrane bound O-acyltransferase domain containing 2	protein-coding	0.140000	0.771144	
mm_167175.1	chr7	140093168	140093368	+	1	NA	NA	NA	-128	NM_009475	22264	Mm.439707	NM_009475	ENSMUSG00000025467	Prap1	Upa	proline-rich acidic protein 1	protein-coding	0.010000	0.542289	
mm_157477.1	chrX	48143588	48143788	-	1	NA	NA	NA	-2748	NM_001313749	74131	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	0.040000	0.621891	
mm_142702.1	chr17	47878420	47878620	-	1	NA	NA	NA	-43829	NM_001109973	17240	Mm.329100	NM_010783	ENSMUSG00000032717	Mdfi	I-mf|I-mfa	MyoD family inhibitor	protein-coding	0.065000	0.701493	
mm_29031.1	chr3	102166929	102167129	-	1	NA	NA	NA	37664	NM_177545	229658	Mm.118004	NM_177545	ENSMUSG00000027860	Vangl1	Kitenin|Lpp2|Stb2|Stbm	vang-like 1 (van gogh, Drosophila)	protein-coding	0.020000	0.502488	
mm_141586.1	chr17	32403471	32403671	-	1	NA	NA	NA	10	NM_178785	320484	Mm.122284	NM_178785	ENSMUSG00000052142	Rasal3	A430107D22Rik	RAS protein activator like 3	protein-coding	0.030000	0.597015	
mm_171052.1	chr3	103039915	103040115	-	1	NA	NA	NA	-18270	NM_010937	18176	Mm.400954	NM_010937	ENSMUSG00000027852	Nras	AV095280|N-ras	neuroblastoma ras oncogene	protein-coding	0.015000	0.343284	
mm_114956.1	chr13	97067174	97067374	+	1	NA	NA	NA	-13	NM_001146045	320557	Mm.458280	NM_001100458	ENSMUSG00000041817	Fam169a	B230112C05Rik|SLAP75	family with sequence similarity 169, member A	protein-coding	0.020000	0.407960	
mm_136915.1	chr17	13061006	13061206	+	1	NA	NA	NA	-5	NM_009341	21462	Mm.264651	NM_009341	ENSMUSG00000055602	Tcp10b	D17Leh66B|D17Leh66ba|T66B-a|Tcp-10b|Tcp-10bt	t-complex protein 10b	protein-coding	0.005000	0.432836	-30(GGCCCTTTAAGA,-,0.00),-27(CCTTTAAGACAG,+,0.00)
mm_155192.1	chrX	56454760	56454960	+	1	NA	NA	NA	21	NM_172779	236790	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	0.045000	0.527363	
mm_164303.1	chr15	103897312	103897512	+	1	NA	NA	NA	1888	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.030000	0.402985	
mm_101341.1	chr11	23520040	23520240	-	1	NA	NA	NA	-198	NM_001110133	67358	Mm.87328	NM_026105	ENSMUSG00000020286	1700093K21Rik	-	RIKEN cDNA 1700093K21 gene	protein-coding	0.010000	0.517413	
mm_138819.1	chr17	39847477	39847677	+	1	NA	NA	NA	4580	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.060000	0.552239	
mm_30206.1	chr3	144760638	144760838	-	1	NA	NA	NA	239	NR_130895	12722	Mm.454553	NM_009899	ENSMUSG00000056025	Clca3a1	Cacc|Clca1	chloride channel accessory 3A1	protein-coding	0.015000	0.552239	
mm_157807.1	chrX	73930687	73930887	-	1	NA	NA	NA	63	NM_023132	19703	Mm.236969	NM_023132	ENSMUSG00000031387	Renbp	Age|Rnbp	renin binding protein	protein-coding	0.045000	0.557214	
mm_124611.1	chr15	3279367	3279567	+	1	NA	NA	NA	8490	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.020000	0.547264	
mm_124223.1	chr14	100284768	100284968	-	1	NA	NA	NA	-135072	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.085000	0.676617	
mm_60851.1	chr7	45830795	45830995	+	1	NA	NA	NA	-106	NM_153419	101612	Mm.274847	NM_153419	ENSMUSG00000053801	Grwd1	A301|AI504353|Grwd|Wdr28	glutamate-rich WD repeat containing 1	protein-coding	0.055000	0.527363	
mm_169018.1	chr13	111140232	111140432	-	1	NA	NA	NA	89099	NR_045908	73129	Mm.417826	NR_045908		3110015C05Rik	-	RIKEN cDNA 3110015C05 gene	ncRNA	0.000000	0.502488	
mm_155957.1	chrX	105140656	105140856	+	1	NA	NA	NA	20378	NM_053201	107528	Mm.24341	NM_053201	ENSMUSG00000031227	Magee1	AI847422|DAMAGE|mMage-e1	melanoma antigen, family E, 1	protein-coding	0.040000	0.512438	
mm_134293.1	chr16	14248888	14249088	-	1	NA	NA	NA	42420	NM_001161775	17880	Mm.250705	NM_013607	ENSMUSG00000018830	Myh11	AV071570|SM1|SM2|smMHC	myosin, heavy polypeptide 11, smooth muscle	protein-coding	0.005000	0.547264	
mm_21791.1	chr2	164857119	164857319	-	1	NA	NA	NA	489	NM_011125	18830	Mm.6105	NM_011125	ENSMUSG00000017754	Pltp	Bpife|OD107	phospholipid transfer protein	protein-coding	0.045000	0.547264	
mm_147338.1	chr18	42899405	42899605	-	1	NA	NA	NA	1	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.060000	0.701493	-36(CGCCTTTAATGC,-,0.00),-34(CCTTTAATGCAC,+,0.00)
mm_145504.1	chr18	60391422	60391622	+	1	NA	NA	NA	15493	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.005000	0.383085	57(GTTTTTAAACTG,+,0.00)
mm_16677.1	chr2	6872344	6872544	-	1	NA	NA	NA	-409	NM_001347094	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.170000	0.741294	
mm_71204.1	chr8	40888307	40888507	+	1	NA	NA	NA	26040	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.010000	0.348259	-22(TCCCTTTAAAGG,-,0.00),-21(CCCTTTAAAGGG,+,0.00),-21(CCCTTTAAAGGG,-,0.00),-20(CCTTTAAAGGGT,+,0.00)
mm_151419.1	chr19	56758102	56758302	+	1	NA	NA	NA	35830	NM_007419	11554	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.015000	0.477612	
mm_62785.1	chr7	112499913	112500113	+	1	NA	NA	NA	72307	NM_020606	57342	Mm.143763	NM_020606	ENSMUSG00000030770	Parva	2010012A22Rik|5430400F08Rik|AI225929|AU042898|Actp|CH-ILKBP|Parvin	parvin, alpha	protein-coding	0.005000	0.313433	
mm_106377.1	chr11	118419024	118419224	-	1	NA	NA	NA	-6	NM_001267592	76025	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	0.090000	0.656716	
mm_32327.1	chr4	104175071	104175271	+	1	NA	NA	NA	-192367	NR_104385	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding	0.005000	0.318408	
mm_59937.1	chr7	30424214	30424414	+	1	NA	NA	NA	1010	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.010000	0.542289	
mm_15739.1	chr2	164237193	164237393	+	1	NA	NA	NA	1048	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.005000	0.388060	
mm_8298.1	chr1	143702717	143702917	-	1	NA	NA	NA	76	NM_145991	214498	Mm.156727	NM_145991	ENSMUSG00000026361	Cdc73	8430414L16Rik|C130030P16Rik|C81219|Hrpt2	cell division cycle 73, Paf1/RNA polymerase II complex component	protein-coding	0.150000	0.766169	-29(CCTTATATAGCG,+,0.00)
mm_63171.1	chr7	125318239	125318439	+	1	NA	NA	NA	31447	NR_045804	71208	Mm.159465	NM_172408	ENSMUSG00000045928	4933440M02Rik	-	RIKEN cDNA 4933440M02 gene	ncRNA	0.005000	0.437811	
mm_131546.1	chr16	17891831	17892031	+	1	NA	NA	NA	-203	NM_001109750	13356	Mm.254515	NM_010048	ENSMUSG00000003166	Dgcr2	9930034O06Rik|DGS-C|Dgsc|Idd|Lan|Sez12|mKIAA0163	DiGeorge syndrome critical region gene 2	protein-coding	0.040000	0.616915	
mm_131458.1	chr16	16983306	16983506	+	1	NA	NA	NA	24	NM_001038663	26413	Mm.196581	NM_011949	ENSMUSG00000063358	Mapk1	9030612K14Rik|AA407128|AU018647|C78273|ERK|Erk2|MAPK2|PRKM2|Prkm1|p41mapk|p42mapk	mitogen-activated protein kinase 1	protein-coding	0.100000	0.636816	
mm_122495.1	chr14	46634392	46634592	-	1	NA	NA	NA	2931	NR_046460	74458	Mm.390708	NR_046460		4933425B07Rik	-	RIKEN cDNA 4933425B07 gene	ncRNA	0.035000	0.517413	
mm_84335.1	chr9	64022891	64023091	-	1	NA	NA	NA	-932	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.090000	0.696517	
mm_55444.1	chr6	67186561	67186761	-	1	NA	NA	NA	-80318	NM_001113564	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.005000	0.457711	
mm_137272.1	chr17	24718003	24718203	+	1	NA	NA	NA	-46	NM_026205	67504	Mm.46159	NM_026205	ENSMUSG00000008482	Rnf151	1700010O16Rik|AV047371	ring finger protein 151	protein-coding	0.010000	0.532338	
mm_5424.1	chr1	34439258	34439458	-	1	NA	NA	NA	314	NM_027159	69668	Mm.379170	NM_027159	ENSMUSG00000042111	Ccdc115	2310061I09Rik|Ccp1	coiled-coil domain containing 115	protein-coding	0.065000	0.631841	
mm_146021.1	chr18	69519592	69519792	+	1	NA	NA	NA	173971	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.010000	0.378109	
mm_165825.1	chr3	151294424	151294624	+	1	NA	NA	NA	-143358	NM_133222	170757	Mm.317261	NM_133222	ENSMUSG00000039167	Adgrl4	1110033N21Rik|ETL1|Eltd1|Etl	adhesion G protein-coupled receptor L4	protein-coding	0.010000	0.462687	46(CCTTTTAAAGTA,+,0.00)
mm_66403.1	chr7	44473913	44474113	-	1	NA	NA	NA	3666	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.427861	
mm_27344.1	chr3	50414734	50414934	-	1	NA	NA	NA	28779	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.318408	
mm_5150.1	chr1	9799262	9799462	-	1	NA	NA	NA	1232	NM_177547	170755	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.005000	0.412935	-30(CCCTATAAAAAC,-,0.00)
mm_12642.1	chr2	74712039	74712239	+	1	NA	NA	NA	146	NM_010468	15434	Mm.430708	NM_010468	ENSMUSG00000079277	Hoxd3	Hox-4.1|Hox-5.5	homeobox D3	protein-coding	0.110000	0.716418	
mm_6087.1	chr1	63114428	63114628	-	1	NA	NA	NA	57	NR_045915	100380944	Mm.392955	NR_045914	ENSMUSG00000084799	Ino80dos	Gm11602|OTTMUSG00000002611	INO80 complex subunit D, opposite strand	ncRNA	0.030000	0.527363	
mm_98347.1	chr11	93320184	93320384	+	1	NA	NA	NA	220994	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	0.005000	0.288557	
mm_68859.1	chr7	126396639	126396839	-	1	NA	NA	NA	-2	NM_010900	18020	Mm.1389	NM_010900	ENSMUSG00000030722	Nfatc2ip	D7Ertd304e|NIP45	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein	protein-coding	0.095000	0.651741	
mm_30783.1	chr4	19574971	19575171	+	1	NA	NA	NA	5	NM_025476	66302	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	0.085000	0.641791	
mm_125636.1	chr15	62056701	62056901	+	1	NA	NA	NA	17544	NR_132746	19296	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	plasmacytoma variant translocation 1	ncRNA	0.015000	0.398010	
mm_154084.1	chr19	56665953	56666153	-	1	NA	NA	NA	-56319	NM_007419	11554	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.005000	0.507463	
mm_118009.1	chr13	100651159	100651359	-	1	NA	NA	NA	-84	NM_027139	108143	Mm.301148	NM_027139	ENSMUSG00000052293	Taf9	2310012M09Rik|AA673500|AU045423|TAFII31|TAFII32|Taf2g	TATA-box binding protein associated factor 9	protein-coding	0.120000	0.701493	
mm_94332.1	chr11	4423997	4424197	+	1	NA	NA	NA	16985	NM_029458	75828	Mm.159592	NM_029458	ENSMUSG00000020419	Hormad2	4930529M09Rik	HORMA domain containing 2	protein-coding	0.025000	0.358209	-37(GCGTATATAAAA,-,0.00),-35(GTATATAAAAAG,-,0.00)
mm_40788.1	chr5	67450388	67450588	+	1	NA	NA	NA	-13410	NR_110363	320479	Mm.387187	NR_015582	ENSMUSG00000107385	C330024D21Rik	-	RIKEN cDNA C330024D21 gene	ncRNA	0.040000	0.447761	-56(GCTTTTAAGCCG,+,0.00)
mm_95841.1	chr11	57012666	57012866	+	1	NA	NA	NA	-280	NM_001252403	14799	Mm.4920	NM_008165	ENSMUSG00000020524	Gria1	2900051M01Rik|Glr-1|Glr1|GluA1|GluR-A|GluRA|Glur-1|Glur1|HIPA1|gluR-K1	glutamate receptor, ionotropic, AMPA1 (alpha 1)	protein-coding	0.010000	0.562189	
mm_103217.1	chr11	70655040	70655240	-	1	NA	NA	NA	-490	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.145000	0.756219	
mm_85954.1	chr9	112121240	112121440	-	1	NA	NA	NA	-2629	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.015000	0.437811	
mm_55967.1	chr6	85820871	85821071	-	1	NA	NA	NA	1	NM_023493	69049	Mm.441449	NM_023493	ENSMUSG00000079494	Nat8f5	1810018F03Rik|Cml5	N-acetyltransferase 8 (GCN5-related) family member 5	protein-coding	0.015000	0.522388	
mm_121084.1	chr14	99201510	99201710	+	1	NA	NA	NA	-97081	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.005000	0.298507	
mm_21439.1	chr2	158610561	158610761	-	1	NA	NA	NA	62	NR_040358	100045469	Mm.143404	NR_040358	ENSMUSG00000086496	Gm14204	OTTMUSG00000015935	predicted gene 14204	ncRNA	0.050000	0.651741	
mm_84387.1	chr9	65422917	65423117	-	1	NA	NA	NA	-244	NM_178933	330962	Mm.335247	NM_178933	ENSMUSG00000053862	Slc51b	Ostb	solute carrier family 51, beta subunit	protein-coding	0.025000	0.532338	
mm_41747.1	chr5	102845013	102845213	+	1	NA	NA	NA	106	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.010000	0.562189	
mm_167338.1	chr8	72318804	72319004	-	1	NA	NA	NA	-158	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.125000	0.696517	-36(CGGTATATAAGC,-,0.00)
mm_134800.1	chr16	24296126	24296326	-	1	NA	NA	NA	-97124	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.000000	0.447761	
mm_70387.1	chr8	10634656	10634856	+	1	NA	NA	NA	247698	NR_040705	320014	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.020000	0.507463	
mm_94467.1	chr11	6475187	6475387	+	1	NA	NA	NA	789	NM_011221	19291	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0.170000	0.796020	
mm_29769.1	chr3	127225986	127226186	-	1	NA	NA	NA	64781	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.030000	0.492537	
mm_57695.1	chr6	128522000	128522200	-	1	NA	NA	NA	4620	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.010000	0.447761	
mm_60719.1	chr7	45335177	45335377	+	1	NA	NA	NA	8	NM_010473	15464	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.005000	0.547264	
mm_138395.1	chr17	35052398	35052598	+	1	NA	NA	NA	2255	NM_033444	114584	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.015000	0.532338	
mm_52845.1	chr6	121838532	121838732	+	1	NA	NA	NA	91	NM_008645	17836	Mm.1311	NM_008645	ENSMUSG00000059908	Mug1	-	murinoglobulin 1	protein-coding	0.025000	0.492537	
mm_8768.1	chr1	160813050	160813250	-	1	NA	NA	NA	-20212	NM_013862	29809	Mm.25833	NM_013862	ENSMUSG00000026721	Rabgap1l	5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471	RAB GTPase activating protein 1-like	protein-coding	0.000000	0.542289	
mm_105521.1	chr11	106300285	106300485	-	1	NA	NA	NA	1511	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.035000	0.577114	
mm_12176.1	chr2	62692645	62692845	+	1	NA	NA	NA	28418	NM_145523	227960	Mm.219877	NM_145523	ENSMUSG00000026893	Gca	5133401E04Rik|AI573844	grancalcin	protein-coding	0.005000	0.417910	
mm_66146.1	chr7	31127071	31127271	-	1	NA	NA	NA	-148	NM_011322	20266	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	0.080000	0.656716	
mm_103821.1	chr11	83004296	83004496	-	1	NA	NA	NA	-12566	NM_172796	237886	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.000000	0.477612	
mm_131469.1	chr16	17044449	17044649	+	1	NA	NA	NA	-25590	NM_023249	106369	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee-like 1 (Drosophila)	protein-coding	0.005000	0.437811	
mm_102685.1	chr11	65345125	65345325	-	1	NA	NA	NA	-57392	NR_040280	327946	Mm.383301	NR_040280	ENSMUSG00000085162	Gm12295	A730013G04|OTTMUSG00000005904	predicted gene 12295	ncRNA	0.015000	0.402985	
mm_70261.1	chr8	3516845	3517045	+	1	NA	NA	NA	1561	NM_015801	50767	Mm.23085	NM_015801	ENSMUSG00000004565	Pnpla6	AI661849|MSws|Nte	patatin-like phospholipase domain containing 6	protein-coding	0.050000	0.567164	
mm_80433.1	chr9	77923223	77923423	+	1	NA	NA	NA	5958	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.015000	0.492537	-86(GCATTTAAAGGA,+,0.00)
mm_88110.1	chr10	69151301	69151501	+	1	NA	NA	NA	-57151	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.040000	0.567164	
mm_146671.1	chr18	12425165	12425365	-	1	NA	NA	NA	-78934	NM_001347461	16774	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0.010000	0.482587	
mm_125609.1	chr15	61157739	61157939	+	1	NA	NA	NA	-236569	NM_001081067	117586	Mm.291499	NM_001081067	ENSMUSG00000022347	A1bg	C44	alpha-1-B glycoprotein	protein-coding	0.035000	0.422886	-74(CAGTTTTAAAGC,-,0.00),-9(TCTTTAATAGTC,+,0.00)
mm_100647.1	chr11	3104691	3104891	-	1	NA	NA	NA	-19230	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.035000	0.482587	
mm_34073.1	chr4	138457512	138457712	+	1	NA	NA	NA	2464	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.010000	0.452736	50(CTTTTTCTAGCC,+,0.00)
mm_77486.1	chr8	122556645	122556845	-	1	NA	NA	NA	-5416	NM_001037298	234839	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	0.015000	0.597015	
mm_51143.1	chr6	70518146	70518346	+	1	NA	NA	NA	273929	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.487562	
mm_121034.1	chr14	79875484	79875684	+	1	NA	NA	NA	-6408	NR_033535	100038734	Mm.387484	NR_033535		Gm10845	ENSMUSG00000075496	predicted gene 10845	ncRNA	0.005000	0.477612	
mm_127738.1	chr15	103298779	103298979	+	1	NA	NA	NA	11559	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.005000	0.497512	
mm_64808.1	chr7	6706519	6706719	-	1	NA	NA	NA	-141	NR_023846	100169889	Mm.491213	NR_023846		Peg3os	Apeg3|Peg3as	Peg3 opposite strand	ncRNA	0.005000	0.343284	73(TGCCTTTAAAGA,-,0.00),74(GCCTTTAAAGAG,+,0.00),74(GCCTTTAAAGAG,-,0.00)
mm_96543.1	chr11	68704407	68704607	+	1	NA	NA	NA	12592	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.000000	0.323383	
mm_100966.1	chr11	6660116	6660316	-	1	NA	NA	NA	20	NR_028586	100041311	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	OTTMUSG00000005125|OTTMUSG00000005127	predicted gene 11978	pseudo	0.015000	0.547264	
mm_124718.1	chr15	6579792	6579992	+	1	NA	NA	NA	45	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.025000	0.492537	
mm_113562.1	chr13	38190338	38190538	+	1	NA	NA	NA	-14501	NM_026382	67797	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	0.025000	0.343284	
mm_77913.1	chr9	7349971	7350171	+	1	NA	NA	NA	2697	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.010000	0.383085	
mm_10153.1	chr2	4300820	4301020	+	1	NA	NA	NA	-100056	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.025000	0.507463	
mm_152586.1	chr19	11604619	11604819	-	1	NA	NA	NA	85	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.005000	0.492537	
mm_80912.1	chr9	100644909	100645109	+	1	NA	NA	NA	1386	NM_009282	20842	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	0.010000	0.328358	
mm_121082.1	chr14	99099900	99100100	+	1	NA	NA	NA	-230	NM_028315	72662	Mm.163339	NM_028315	ENSMUSG00000033166	Dis3	2810028N01Rik	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease	protein-coding	0.055000	0.597015	
mm_160280.1	chr7	122219360	122219560	+	1	NA	NA	NA	-36	NM_027363	70261	Mm.96997	NM_027363	ENSMUSG00000030865	Chp2	2010110P09Rik|Cbhp2	calcineurin-like EF hand protein 2	protein-coding	0.030000	0.582090	
mm_119011.1	chr14	29968316	29968516	+	1	NA	NA	NA	36	NM_019979	80795	Mm.104491	NM_019979	ENSMUSG00000042682	Selenok	1110001C03Rik|AA673253|HSPC030|Hsp30|Selk	selenoprotein K	protein-coding	0.060000	0.626866	
mm_9886.1	chr1	186625113	186625313	-	1	NA	NA	NA	-66532	NR_131158	320449	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.010000	0.323383	
mm_34916.1	chr4	155721633	155721833	+	1	NA	NA	NA	-13071	NM_001101506	381582	Mm.379515	NM_001101506	ENSMUSG00000084845	Tmem240	EG381582|Gm5151	transmembrane protein 240	protein-coding	0.015000	0.417910	
mm_172256.1	chr6	70387170	70387370	-	1	NA	NA	NA	404905	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.432836	
mm_153768.1	chr19	45630996	45631196	-	1	NA	NA	NA	29097	NM_013907	30838	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0.015000	0.567164	
mm_90290.1	chr10	123434617	123434817	+	1	NA	NA	NA	170641	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	0.005000	0.313433	
mm_141137.1	chr17	26244095	26244295	-	1	NA	NA	NA	47	NM_207217	106581	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0.085000	0.741294	
mm_13514.1	chr2	109917517	109917717	+	1	NA	NA	NA	-30	NM_172671	107515	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	0.085000	0.611940	
mm_152528.1	chr19	11324133	11324333	-	1	NA	NA	NA	10462	NM_001276398	109225	Mm.491251	NM_027836	ENSMUSG00000024672	Ms4a7	9130422I10Rik|A430103C15Rik|CD20l4|CFFMA	membrane-spanning 4-domains, subfamily A, member 7	protein-coding	0.000000	0.383085	
mm_10723.1	chr2	22853052	22853252	+	1	NA	NA	NA	-42370	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.020000	0.412935	
mm_73205.1	chr8	95678193	95678393	+	1	NA	NA	NA	-24744	NM_001195006	234593	Mm.29846	NM_145602	ENSMUSG00000036564	Ndrg4	D8Bwg1337e|Ndr1-rs|Ndr4|R74996|SMAP-8	N-myc downstream regulated gene 4	protein-coding	0.105000	0.686567	-88(TTTTTTAAACCC,+,0.00)
mm_14924.1	chr2	151485883	151486083	+	1	NA	NA	NA	-8199	NM_001291074	386649	Mm.419479	NM_198326	ENSMUSG00000027455	Nsfl1c	Munc-18c|Stxbp3a|p47	NSFL1 (p97) cofactor (p47)	protein-coding	0.010000	0.432836	
mm_72938.1	chr8	91384601	91384801	+	1	NA	NA	NA	71176	NM_011936	26383	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	0.010000	0.597015	
mm_166497.1	chr6	3494509	3494709	-	1	NA	NA	NA	-111	NM_178899	101202	Mm.206911	NM_178899	ENSMUSG00000044156	Hepacam2	AI987662	HEPACAM family member 2	protein-coding	0.005000	0.442786	
mm_69665.1	chr7	139980765	139980965	-	1	NA	NA	NA	-2110	NM_001347613	381933	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0.010000	0.432836	
mm_87520.1	chr10	52823665	52823865	+	1	NA	NA	NA	133264	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding	0.000000	0.328358	
mm_12261.1	chr2	68941735	68941935	+	1	NA	NA	NA	80394	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.005000	0.383085	
mm_132869.1	chr16	48611684	48611884	+	1	NA	NA	NA	160172	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.005000	0.437811	
mm_117261.1	chr13	64368725	64368925	-	1	NA	NA	NA	1695	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.000000	0.517413	
mm_158330.1	chrX	133961651	133961851	-	1	NA	NA	NA	20061	NM_001290718	27359	Mm.38674	NM_013757	ENSMUSG00000031255	Sytl4	Gph|Slp4	synaptotagmin-like 4	protein-coding	0.030000	0.542289	
mm_140587.1	chr17	10216189	10216389	-	1	NA	NA	NA	103072	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.020000	0.527363	
mm_112403.1	chr13	3538381	3538581	+	1	NA	NA	NA	406	NM_008112	14569	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0.100000	0.681592	
mm_67755.1	chr7	92667862	92668062	-	1	NA	NA	NA	1950	NM_029078	74737	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	0.020000	0.373134	-4(TCTTTAAGGGCC,+,0.00),85(GGTTTTTAAAAG,-,0.00)
mm_36267.1	chr4	63605046	63605246	-	1	NA	NA	NA	115	NR_028583	670833	Mm.32213	NR_028583	ENSMUSG00000084782	Gm11213	OTTMUSG00000000252	predicted gene 11213	ncRNA	0.005000	0.547264	
mm_26779.1	chr3	9004394	9004594	-	1	NA	NA	NA	21	NM_009412	21985	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.170000	0.786070	
mm_95.1	chr1	7204112	7204312	+	1	NA	NA	NA	115292	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.005000	0.542289	
mm_63365.1	chr7	127083733	127083933	+	1	NA	NA	NA	-7603	NM_178901	101602	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	0.015000	0.417910	
mm_32054.1	chr4	97772738	97772938	+	1	NA	NA	NA	-4788	NM_001122953	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.030000	0.353234	
mm_77699.1	chr8	126589797	126589997	-	1	NA	NA	NA	3539	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.000000	0.328358	
mm_122038.1	chr14	30008741	30008941	-	1	NA	NA	NA	55	NM_019583	50905	Mm.269363	NM_019583	ENSMUSG00000015966	Il17rb	Evi27|IL-17ER|IL-17Rh1|IL17RH1|Il17br	interleukin 17 receptor B	protein-coding	0.070000	0.691542	
mm_113342.1	chr13	31785148	31785348	+	1	NA	NA	NA	-21398	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.015000	0.557214	
mm_16574.1	chr2	3474865	3475065	-	1	NA	NA	NA	21	NM_022724	64707	Mm.23483	NM_022724	ENSMUSG00000026646	Suv39h2	4930507K23Rik|AA536750|D030054H19Rik|D2Ertd544e|KMT1B	suppressor of variegation 3-9 homolog 2 (Drosophila)	protein-coding	0.100000	0.721393	
mm_46416.1	chr5	104097659	104097859	-	1	NA	NA	NA	16329	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding	0.030000	0.517413	
mm_126990.1	chr15	94566977	94567177	+	1	NA	NA	NA	22747	NM_008971	19230	Mm.490250	NM_008971	ENSMUSG00000022451	Twf1	A6|Ptk9|twinfilin	twinfilin actin binding protein 1	protein-coding	0.020000	0.358209	
mm_58976.1	chr7	19037254	19037454	+	1	NA	NA	NA	12977	NM_026605	68188	Mm.130902	NM_026605	ENSMUSG00000023118	Sympk	1500016F02Rik|4632415H16Rik|AA125406|AI449890|SPK|SYM	symplekin	protein-coding	0.005000	0.547264	
mm_105412.1	chr11	103638745	103638945	-	1	NA	NA	NA	29	NM_027083	69444	Mm.275677	NM_027083	ENSMUSG00000020945	Lyzl6	1700023H08Rik|Lyc1|Lyzb	lysozyme-like 6	protein-coding	0.010000	0.532338	
mm_81164.1	chr9	107299054	107299254	+	1	NA	NA	NA	2495	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.020000	0.522388	-6(GCCTTTAGAGGA,+,0.00)
mm_710.1	chr1	41743587	41743787	+	1	NA	NA	NA	-562435	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA	0.025000	0.442786	
mm_126403.1	chr15	80242474	80242674	+	1	NA	NA	NA	8494	NM_178719	239555	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.000000	0.323383	
mm_123853.1	chr14	70924067	70924267	-	1	NA	NA	NA	34060	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.000000	0.378109	
mm_129063.1	chr15	75567576	75567776	-	1	NA	NA	NA	-494	NM_011837	23934	Mm.22154	NM_011837	ENSMUSG00000022577	Ly6h	-	lymphocyte antigen 6 complex, locus H	protein-coding	0.020000	0.477612	
mm_130214.1	chr15	95654687	95654887	-	1	NA	NA	NA	-16	NM_207533	223843	Mm.152937	NM_207533	ENSMUSG00000045608	Dbx2	9430056A22Rik|9630005K15|AI846217|Gm1229	developing brain homeobox 2	protein-coding	0.050000	0.611940	
mm_67791.1	chr7	97728975	97729175	-	1	NA	NA	NA	9172	NM_175105	66333	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.020000	0.487562	
mm_31466.1	chr4	49536555	49536755	+	1	NA	NA	NA	12891	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.000000	0.383085	
mm_5528.1	chr1	37916392	37916592	-	1	NA	NA	NA	1	NM_001033427	332427	Mm.332981	NM_001033427	ENSMUSG00000061584	Lyg2	Gm776	lysozyme G-like 2	protein-coding	0.010000	0.422886	-57(TGCTTTAAAGAG,-,0.00),-55(CTTTAAAGAGAG,+,0.00)
mm_97311.1	chr11	76697403	76697603	+	1	NA	NA	NA	17630	NM_177709	237858	Mm.127006	NM_177709	ENSMUSG00000046275	Tusc5	C130069F04Rik|DSPB1|Lost1	tumor suppressor candidate 5	protein-coding	0.010000	0.472637	
mm_29432.1	chr3	109051725	109051925	-	1	NA	NA	NA	-24218	NM_001163567	329739	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.005000	0.492537	
mm_32045.1	chr4	95969824	95970024	+	1	NA	NA	NA	-2269	NR_045776	319247	Mm.473527	NM_175680	ENSMUSG00000044125	9530080O11Rik	-	RIKEN cDNA 9530080O11 gene	ncRNA	0.000000	0.527363	-74(GGCCATATAAGG,-,0.00),-72(CCATATAAGGCA,+,0.00)
mm_24991.1	chr3	97158734	97158934	+	1	NA	NA	NA	57	NM_019800	66659	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	0.055000	0.552239	
mm_55939.1	chr6	84970757	84970957	-	1	NA	NA	NA	98656	NM_177077	75914	Mm.159621	NM_177077	ENSMUSG00000033769	Exoc6b	4930569O18Rik|G430127E12Rik|Sec15b|Sec15l2|mKIAA0919	exocyst complex component 6B	protein-coding	0.005000	0.328358	
mm_161706.1	chr17	24732467	24732667	+	1	NA	NA	NA	-118	NM_025425	66211	Mm.46198	NM_025425	ENSMUSG00000002500	Rpl3l	1110057H16Rik	ribosomal protein L3-like	protein-coding	0.010000	0.582090	
mm_92322.1	chr10	75667498	75667698	-	1	NA	NA	NA	-23590	NM_027890	71733	Mm.247956	NM_027890	ENSMUSG00000006342	Susd2	1200011D11Rik	sushi domain containing 2	protein-coding	0.125000	0.726368	
mm_89381.1	chr10	89443408	89443608	+	1	NA	NA	NA	459	NM_001284344	237436	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0.045000	0.572139	
mm_113616.1	chr13	41569193	41569393	+	1	NA	NA	NA	-36923	NM_001163572	621976	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.020000	0.487562	
mm_143601.1	chr17	75701018	75701218	-	1	NA	NA	NA	-149172	NM_133747	72722	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0.000000	0.278607	
mm_102716.1	chr11	67114729	67114929	-	1	NA	NA	NA	5251	NR_038055	74184	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	0.015000	0.462687	
mm_120616.1	chr14	70289492	70289692	+	1	NA	NA	NA	-95	NM_001304992	19057	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	0.115000	0.691542	
mm_28524.1	chr3	92588940	92589140	-	1	NA	NA	NA	-16	NM_008574	17235	Mm.331192	NM_008574		Smcp	Mcs|Mcsp	sperm mitochondria-associated cysteine-rich protein	protein-coding	0.000000	0.477612	
mm_26038.1	chr3	135547492	135547692	+	1	NA	NA	NA	61981	NM_027288	110173	Mm.280536	NM_027288	ENSMUSG00000028164	Manba	2410030O07Rik|B930014J03Rik|Bmn	mannosidase, beta A, lysosomal	protein-coding	0.015000	0.427861	
mm_118838.1	chr14	25635848	25636048	+	1	NA	NA	NA	32435	NM_001309430	100188919	Mm.473810	NM_001309430		Israa	-	immune system released activating agent	protein-coding	0.025000	0.611940	
mm_28543.1	chr3	92851185	92851385	-	1	NA	NA	NA	1	NM_028628	73730	Mm.291773	NM_028628	ENSMUSG00000046676	Lce1l	1110008K04Rik|AI415426	late cornified envelope 1L	protein-coding	0.010000	0.497512	-33(TAGCATAAAAGG,-,0.00)
mm_111695.1	chr12	103655777	103655977	-	1	NA	NA	NA	1341	NM_007618	12401	Mm.290079	NM_007618	ENSMUSG00000060807	Serpina6	Cbg	serine (or cysteine) peptidase inhibitor, clade A, member 6	protein-coding	0.000000	0.601990	
mm_129099.1	chr15	76009360	76009560	-	1	NA	NA	NA	38	NM_001168253	105732	Mm.267178	NM_134087	ENSMUSG00000046761	Fam83h	AA409316	family with sequence similarity 83, member H	protein-coding	0.135000	0.796020	
mm_172407.1	chr7	16661768	16661968	+	1	NA	NA	NA	-4390	NR_003247	100038912	Mm.389813	NR_003247	ENSMUSG00000108307	Ceacam-ps1	Gm1978	carcinoembryonic antigen-related cell adhesion molecule pseudogene 1	pseudo	0.040000	0.592040	
mm_30553.1	chr4	3694009	3694209	+	1	NA	NA	NA	15988	NM_010747	17096	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.000000	0.477612	
mm_67595.1	chr7	83706671	83706871	-	1	NA	NA	NA	28719	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.005000	0.318408	
mm_20955.1	chr2	151741113	151741313	-	1	NA	NA	NA	97	NM_212446	228769	Mm.146984	NM_144889	ENSMUSG00000032869	Psmf1	AW048666|BC012260|PI31	proteasome (prosome, macropain) inhibitor subunit 1	protein-coding	0.120000	0.611940	
mm_34380.1	chr4	144904212	144904412	+	1	NA	NA	NA	11175	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.005000	0.462687	-33(TGCTTTATAAGC,-,0.00)
mm_51288.1	chr6	72304944	72305144	+	1	NA	NA	NA	434	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.020000	0.597015	
mm_27792.1	chr3	75556730	75556930	-	1	NA	NA	NA	22	NM_019745	56426	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	0.070000	0.572139	
mm_15155.1	chr2	154008236	154008436	+	1	NA	NA	NA	60	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.010000	0.452736	
mm_1435.1	chr1	67200869	67201069	+	1	NA	NA	NA	77942	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.323383	-43(CCTTTTAAATTC,+,0.00),11(TTCTAGAAAAGG,-,0.00)
mm_8076.1	chr1	135585239	135585439	-	1	NA	NA	NA	16	NM_173437	215690	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.130000	0.741294	
mm_13824.1	chr2	119237594	119237794	+	1	NA	NA	NA	334	NM_016907	20732	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	0.090000	0.696517	
mm_76498.1	chr8	86728621	86728821	-	1	NA	NA	NA	-16978	NR_027829	666945	Mm.391806	NR_027829		Gm10638	ENSMUSG00000074178	predicted gene 10638	ncRNA	0.050000	0.592040	
mm_95604.1	chr11	53351980	53352180	+	1	NA	NA	NA	1313	NM_033565	93736	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.035000	0.462687	
mm_161543.1	chr16	3747651	3747851	+	1	NA	NA	NA	3652	NM_148924	74120	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.005000	0.258706	
mm_20101.1	chr2	121036958	121037158	-	1	NA	NA	NA	-181	NM_013513	13828	Mm.240051	NM_013513	ENSMUSG00000023216	Epb42	Epb4.2	erythrocyte membrane protein band 4.2	protein-coding	0.015000	0.452736	
mm_30103.1	chr3	138493732	138493932	-	1	NA	NA	NA	-4450	NM_175224	75624	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	0.015000	0.407960	
mm_143300.1	chr17	65985287	65985487	-	1	NA	NA	NA	-34200	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.015000	0.353234	
mm_32489.1	chr4	107968340	107968540	+	1	NA	NA	NA	106	NM_146255	242607	Mm.192040	NM_146255	ENSMUSG00000008932	Slc1a7	A930031E15Rik|Eaat5	solute carrier family 1 (glutamate transporter), member 7	protein-coding	0.015000	0.577114	
mm_24498.1	chr3	92385585	92385785	+	1	NA	NA	NA	0	NM_011474	20762	Mm.10693	NM_011474	ENSMUSG00000046259	Sprr2h	AI661967	small proline-rich protein 2H	protein-coding	0.005000	0.398010	-32(TCTTATAAAAAG,-,0.00)
mm_148498.1	chr19	4192023	4192223	+	1	NA	NA	NA	-51	NM_031868	19045	Mm.1970	NM_031868	ENSMUSG00000040385	Ppp1ca	Ppp1c|dism2	protein phosphatase 1, catalytic subunit, alpha isoform	protein-coding	0.120000	0.776119	
mm_139958.1	chr17	71551989	71552189	+	1	NA	NA	NA	28	NM_029254	70891	Mm.477599	NM_029254	ENSMUSG00000052525	Spdya	4921517J08Rik|4930548B21Rik|GS4|MLZ-465|Spdy1	speedy/RINGO cell cycle regulator family, member A	protein-coding	0.125000	0.726368	
mm_125280.1	chr15	36283176	36283376	+	1	NA	NA	NA	-129	NM_013923	30945	Mm.5181	NM_013923	ENSMUSG00000022280	Rnf19a	AA032313|Dorfin|Rnf19|UIP117|Ubce7ip2|XYbp	ring finger protein 19A	protein-coding	0.150000	0.741294	
mm_91099.1	chr10	19065111	19065311	-	1	NA	NA	NA	-49801	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.010000	0.457711	-88(GCCTTGATAAGG,-,0.00)
mm_42670.1	chr5	119671502	119671702	+	1	NA	NA	NA	369	NM_011535	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.055000	0.572139	
mm_69205.1	chr7	127406719	127406919	-	1	NA	NA	NA	3	NM_146203	233893	Mm.297097	NM_146203	ENSMUSG00000045757	Zfp764	8030466O12Rik	zinc finger protein 764	protein-coding	0.030000	0.492537	
mm_138635.1	chr17	35861232	35861432	+	1	NA	NA	NA	14	NM_134122	106582	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding	0.110000	0.726368	
mm_89237.1	chr10	87753733	87753933	+	1	NA	NA	NA	-104432	NM_001314010	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.005000	0.447761	
mm_47628.1	chr5	125289643	125289843	-	1	NA	NA	NA	51351	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.040000	0.572139	
mm_60460.1	chr7	44477628	44477828	+	1	NA	NA	NA	-6789	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.417910	
mm_53230.1	chr6	127153547	127153747	+	1	NA	NA	NA	-2599	NM_009829	12444	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.070000	0.621891	
mm_94101.1	chr10	128565852	128566052	-	1	NA	NA	NA	-18	NM_011119	18813	Mm.4742	NM_011119	ENSMUSG00000025364	Pa2g4	38kDa|AA672939|Ebp1|Plfap	proliferation-associated 2G4	protein-coding	0.085000	0.661692	
mm_23378.1	chr3	55707416	55707616	+	1	NA	NA	NA	-74994	NM_010750	17116	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1 (C. elegans)	protein-coding	0.000000	0.303483	
mm_46126.1	chr5	92500424	92500624	-	1	NA	NA	NA	5133	NM_007644	12492	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.020000	0.437811	
mm_62061.1	chr7	92447554	92447754	+	1	NA	NA	NA	-113495	NM_025515	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.015000	0.517413	
mm_31890.1	chr4	82513287	82513487	+	1	NA	NA	NA	5398	NR_137202	102635783	Mm.41666	NR_137202		Gm11266	OTTMUSG00000000396	predicted gene 11266	ncRNA	0.105000	0.731343	
mm_45418.1	chr5	66514726	66514926	-	1	NA	NA	NA	103991	NM_009686	11787	Mm.5159	NM_009686	ENSMUSG00000029207	Apbb2	2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra	amyloid beta (A4) precursor protein-binding, family B, member 2	protein-coding	0.025000	0.393035	
mm_61871.1	chr7	89426187	89426387	+	1	NA	NA	NA	-19	NR_102276	101521	Mm.26902	NR_102276	ENSMUSG00000109311	AI314278	-	expressed sequence AI314278	ncRNA	0.015000	0.447761	
mm_3923.1	chr1	162570621	162570821	+	1	NA	NA	NA	-107	NM_016796	53330	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e	vesicle-associated membrane protein 4	protein-coding	0.100000	0.741294	
mm_148123.1	chr18	75366983	75367183	-	1	NA	NA	NA	-282	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.055000	0.577114	-85(CGCTTTAAAAAA,-,0.00),-36(GTTTCTAAAAGC,-,0.00)
mm_83701.1	chr9	50659472	50659672	-	1	NA	NA	NA	208	NM_145614	235339	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	0.130000	0.711443	
mm_22911.1	chr3	31091621	31091821	+	1	NA	NA	NA	-3337	NM_011386	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.010000	0.512438	
mm_17271.1	chr2	26091743	26091943	-	1	NA	NA	NA	553	NM_001037098	67991	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.055000	0.716418	
mm_49982.1	chr6	41031546	41031746	+	1	NA	NA	NA	3863	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.457711	
mm_70966.1	chr8	27023775	27023975	+	1	NA	NA	NA	76	NM_153592	244373	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.130000	0.706468	
mm_153613.1	chr19	43986013	43986213	-	1	NA	NA	NA	407	NM_030703	93721	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	0.070000	0.572139	
mm_35005.1	chr4	156254248	156254448	+	1	NA	NA	NA	990	NM_001110516	231004	Mm.406833	NM_173736	ENSMUSG00000096351	Samd11	BC026991|mr-s	sterile alpha motif domain containing 11	protein-coding	0.060403	0.653333	
mm_27227.1	chr3	36406283	36406483	-	1	NA	NA	NA	69141	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.015000	0.417910	
mm_117025.1	chr13	58215485	58215685	-	1	NA	NA	NA	68	NM_152234	56085	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	0.160000	0.776119	
mm_2377.1	chr1	93373725	93373925	+	1	NA	NA	NA	-71	NM_207031	404545	Mm.297411	NM_207031	ENSMUSG00000034107	Ano7	Ngep|Ngep-L|Pcanap5|Tmem16g	anoctamin 7	protein-coding	0.005000	0.562189	
mm_171516.1	chr4	146514792	146514992	+	1	NA	NA	NA	-28	NM_001243139	100041433	Mm.441741	NM_001243138	ENSMUSG00000056300	Zfp981	Gm13247|OTTMUSG00000011075	zinc finger protein 981	protein-coding	0.015000	0.507463	
mm_49922.1	chr6	39205442	39205642	+	1	NA	NA	NA	1231	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.115000	0.661692	
mm_133956.1	chr16	4037773	4037973	-	1	NA	NA	NA	728	NM_010061	13419	Mm.291048	NM_010061	ENSMUSG00000005980	Dnase1	AI788650|DNaseI|Dnl1	deoxyribonuclease I	protein-coding	0.020000	0.577114	
mm_124629.1	chr15	4026366	4026566	+	1	NA	NA	NA	38	NM_024188	67041	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	0.075000	0.696517	
mm_142199.1	chr17	36958325	36958525	-	1	NA	NA	NA	3	NM_023162	66136	Mm.486229	NM_023162	ENSMUSG00000036315	Znrd1	1110014N07Rik|Rpa12	zinc ribbon domain containing, 1	protein-coding	0.045000	0.572139	
mm_123243.1	chr14	60251310	60251510	-	1	NA	NA	NA	-32	NM_170591	71844	Mm.258051	NM_170591	ENSMUSG00000063895	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	0.130000	0.706468	
mm_52117.1	chr6	97922654	97922854	+	1	NA	NA	NA	-7063	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.412935	
mm_51831.1	chr6	89643895	89644095	+	1	NA	NA	NA	7	NM_001178058	232223	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TR2|Tgr	thioredoxin reductase 3	protein-coding	0.135000	0.736318	
mm_130108.1	chr15	89456583	89456783	-	1	NA	NA	NA	2772	NM_021921	60597	Mm.173337	NM_021921	ENSMUSG00000022619	Mapk8ip2	3230402N03Rik|AI847694|AW049958|IB2|Jip2|R75148	mitogen-activated protein kinase 8 interacting protein 2	protein-coding	0.025000	0.562189	
mm_140709.1	chr17	14942947	14943147	-	1	NA	NA	NA	77	NM_175173	71682	Mm.122698	NM_175173	ENSMUSG00000046991	Wdr27	0610012K18Rik	WD repeat domain 27	protein-coding	0.090000	0.671642	
mm_103018.1	chr11	69734833	69735033	-	1	NA	NA	NA	23700	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.005000	0.542289	
mm_145521.1	chr18	60557649	60557849	+	1	NA	NA	NA	-3037	NM_025776	66810	Mm.275106	NM_025776	ENSMUSG00000024604	Rbm22	8430430L24Rik	RNA binding motif protein 22	protein-coding	0.015000	0.383085	
mm_148534.1	chr19	4594279	4594479	+	1	NA	NA	NA	60	NM_008797	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.010000	0.532338	
mm_42783.1	chr5	121452536	121452736	+	1	NA	NA	NA	-73	NM_029912	77462	Mm.358781	NM_029912	ENSMUSG00000029452	Tmem116	4930406A18Rik|4930513P12Rik|C030022K24Rik	transmembrane protein 116	protein-coding	0.190000	0.746269	
mm_75087.1	chr8	33929707	33929907	-	1	NA	NA	NA	56	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.120000	0.761194	
mm_151136.1	chr19	52264350	52264550	+	1	NA	NA	NA	153	NM_008386	16333	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding	0.005000	0.552239	
mm_95686.1	chr11	54303723	54303923	+	1	NA	NA	NA	-1	NM_001033598	216739	Mm.267478	NM_144823	ENSMUSG00000020333	Acsl6	A330035H04Rik|AW050338|Facl6|LACS|Lacsl|mKIAA0837	acyl-CoA synthetase long-chain family member 6	protein-coding	0.030000	0.606965	
mm_35874.1	chr4	49536644	49536844	-	1	NA	NA	NA	12802	NM_144903	230163	Mm.482116	NM_144903	ENSMUSG00000028307	Aldob	Aldo-2|Aldo2|BC016435	aldolase B, fructose-bisphosphate	protein-coding	0.005000	0.437811	
mm_12378.1	chr2	69822887	69823087	+	1	NA	NA	NA	617	NM_177784	277396	Mm.138073	NM_177784	ENSMUSG00000042155	Klhl23	C130068N17Rik	kelch-like 23	protein-coding	0.165000	0.805970	
mm_28009.1	chr3	83040921	83041121	-	1	NA	NA	NA	8842	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.000000	0.333333	
mm_99961.1	chr11	113683353	113683553	+	1	NA	NA	NA	698	NM_138598	28081	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0.065000	0.671642	
mm_111414.1	chr12	91556632	91556832	-	1	NA	NA	NA	32917	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.010000	0.343284	77(CCCTTTATAACA,+,0.00)
mm_94581.1	chr11	11690315	11690515	+	1	NA	NA	NA	238	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.010000	0.547264	
mm_26982.1	chr3	25661813	25662013	-	1	NA	NA	NA	491394	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.393035	-4(GCTTTAATACAT,+,0.00)
mm_101885.1	chr11	48946049	48946249	-	1	NA	NA	NA	261	NM_001281472	621823	Mm.440151	NM_001281472	ENSMUSG00000078153	Psme2b	PA28b-p|PA28b2|Psme2-like|Psme2b-ps	protease (prosome, macropain) activator subunit 2B	protein-coding	0.025000	0.482587	
mm_2746.1	chr1	128592352	128592552	+	1	NA	NA	NA	-153	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.070000	0.621891	
mm_47021.1	chr5	115490095	115490295	-	1	NA	NA	NA	-5711	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.095000	0.597015	
mm_104866.1	chr11	99387224	99387424	-	1	NA	NA	NA	2040	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.015000	0.437811	
mm_173260.1	chrX	9487619	9487819	-	1	NA	NA	NA	-18395	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.020000	0.492537	
mm_52749.1	chr6	120644311	120644511	+	1	NA	NA	NA	-22010	NM_001128151	330409	Mm.333357	NM_001128151	ENSMUSG00000071226	Cecr2	2610101O16Rik|2810409N01Rik|Gtl4|mKIAA1740	cat eye syndrome chromosome region, candidate 2	protein-coding	0.025000	0.582090	
mm_18173.1	chr2	45110054	45110254	-	1	NA	NA	NA	123	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.105000	0.656716	
mm_137752.1	chr17	29428988	29429188	+	1	NA	NA	NA	-61957	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.005000	0.432836	
mm_25486.1	chr3	109250898	109251098	+	1	NA	NA	NA	-89685	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.005000	0.422886	-93(CTGCTTAAAAGA,-,0.00)
mm_77249.1	chr8	115705568	115705768	-	1	NA	NA	NA	1226	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.045000	0.597015	
mm_62612.1	chr7	107187069	107187269	+	1	NA	NA	NA	20179	NM_001002894	76858	Mm.35644	NM_001002894	ENSMUSG00000016626	Nlrp14	4921520L01Rik|GC-LRR|Nalp-iota|Nalp14|Nalp14l	NLR family, pyrin domain containing 14	protein-coding	0.000000	0.422886	
mm_96601.1	chr11	69091013	69091213	+	1	NA	NA	NA	2585	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.005000	0.487562	
mm_171737.1	chr4	94932720	94932920	-	1	NA	NA	NA	-3977	NM_001290623	67753	Mm.25097	NM_027089	ENSMUSG00000028575	Eqtn	1700028B15Rik|4930579C15Rik|Afaf|C81058|Eqtl|Eqts	equatorin, sperm acrosome associated	protein-coding	0.015000	0.422886	
mm_112446.1	chr13	5861459	5861659	+	1	NA	NA	NA	70	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.080000	0.631841	
mm_148459.1	chr19	4046377	4046577	+	1	NA	NA	NA	-4256	NM_181796	14869	Mm.441542	NM_181796	ENSMUSG00000038155	Gstp2	GSTpiA|Gst-3|Gst3	glutathione S-transferase, pi 2	protein-coding	0.015000	0.442786	
mm_15890.1	chr2	164879928	164880128	+	1	NA	NA	NA	660	NM_146129	228866	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	0.075000	0.577114	
mm_6132.1	chr1	64690483	64690683	-	1	NA	NA	NA	76	NR_038009	69941	Mm.69044	NR_038009	ENSMUSG00000087213	2810408I11Rik	-	RIKEN cDNA 2810408I11 gene	ncRNA	0.075000	0.601990	
mm_72996.1	chr8	93398825	93399025	+	1	NA	NA	NA	-61716	NM_021456	12623	Mm.22720	NM_021456	ENSMUSG00000057074	Ces1g	Ces-1|Ces1|Ses-1	carboxylesterase 1G	protein-coding	0.000000	0.462687	
mm_100567.1	chr11	120730745	120730945	+	1	NA	NA	NA	1176	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.030000	0.572139	
mm_149674.1	chr19	20389443	20389643	+	1	NA	NA	NA	1128	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.015000	0.442786	
mm_56042.1	chr6	86733137	86733337	-	1	NA	NA	NA	141	NM_011818	23885	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	0.130000	0.741294	
mm_127662.1	chr15	102520643	102520843	+	1	NA	NA	NA	2551	NM_009319	21357	Mm.291485	NM_009319	ENSMUSG00000023051	Tarbp2	Prbp|TRBP	TARBP2, RISC loading complex RNA binding subunit	protein-coding	0.005000	0.547264	
mm_118765.1	chr14	22455794	22455994	+	1	NA	NA	NA	86904	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.010000	0.388060	
mm_166435.1	chr5	137207483	137207683	-	1	NA	NA	NA	-80671	NM_009599	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.015000	0.542289	-48(TCTTATAAGCAC,+,0.00),9(GCTCTTAAGGCC,+,0.00)
mm_91011.1	chr10	15263107	15263307	-	1	NA	NA	NA	502918	NM_008703	18101	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.030000	0.432836	-63(CTGTATAAAAAG,-,0.00)
mm_51069.1	chr6	66535350	66535550	+	1	NA	NA	NA	-18	NM_019499	56150	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	0.090000	0.592040	
mm_147219.1	chr18	37998643	37998843	-	1	NA	NA	NA	226	NM_001205336	106952	Mm.247642	NM_139206	ENSMUSG00000024451	Arap3	Centd3|Drag1|E030006K04Rik|cnt-d3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	protein-coding	0.070000	0.716418	
mm_38799.1	chr4	148151889	148152089	-	1	NA	NA	NA	40	NM_001163706	50762	Mm.27445	NM_015797	ENSMUSG00000055401	Fbxo6	AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b	F-box protein 6	protein-coding	0.090000	0.696517	
mm_19509.1	chr2	93869002	93869202	-	1	NA	NA	NA	55	NM_001033452	381411	Mm.9889	NM_001033452	ENSMUSG00000075023	Accsl	Gm1967	1-aminocyclopropane-1-carboxylate synthase (non-functional)-like	protein-coding	0.015000	0.542289	-34(GTGCTTAAAAGA,-,0.00)
mm_135187.1	chr16	36130996	36131196	-	1	NA	NA	NA	93	NM_001033239	209294	Mm.300592	NM_001033239	ENSMUSG00000034362	Csta1	Csta	cystatin A1	protein-coding	0.010000	0.477612	-36(CCTTTAAAATCC,+,0.00)
mm_108752.1	chr12	88953350	88953550	+	1	NA	NA	NA	60	NM_172544	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.020000	0.512438	
mm_59648.1	chr7	28164663	28164863	+	1	NA	NA	NA	-4985	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.010000	0.542289	
mm_95510.1	chr11	52004104	52004304	+	1	NA	NA	NA	-17	NM_001166657	213084	Mm.280557	NM_153785	ENSMUSG00000020389	Cdkl3	AI852479|B230379H01Rik	cyclin-dependent kinase-like 3	protein-coding	0.075000	0.681592	
mm_11083.1	chr2	27728754	27728954	+	1	NA	NA	NA	18271	NM_001290482	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.005000	0.552239	
mm_142256.1	chr17	38420085	38420285	-	1	NA	NA	NA	0	NM_001177587	100126765	Mm.471586	NM_001177587	ENSMUSG00000092322	Esp36	Gm20408	exocrine gland secreted peptide 36	protein-coding	0.010000	0.383085	
mm_158247.1	chrX	107403250	107403450	-	1	NA	NA	NA	10	NM_008409	16431	Mm.193	NM_008409	ENSMUSG00000031239	Itm2a	AW108051|Bricd2a|E25|Itm2	integral membrane protein 2A	protein-coding	0.040000	0.626866	
mm_68505.1	chr7	111082133	111082333	-	1	NA	NA	NA	797	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.090000	0.726368	
mm_171511.1	chr4	146431000	146431200	+	1	NA	NA	NA	-17930	NM_001085522	433791	Mm.276881	NM_001085522	ENSMUSG00000070605	Zfp992	Gm13251|OTTMUSG00000011097	zinc finger protein 992	protein-coding	0.000000	0.487562	
mm_172749.1	chr8	83666721	83666921	+	1	NA	NA	NA	181	NM_013641	19216	Mm.213000	NM_013641	ENSMUSG00000019464	Ptger1	42kDa|EP1|Ptgerep1	prostaglandin E receptor 1 (subtype EP1)	protein-coding	0.035000	0.686567	
mm_87152.1	chr10	36148867	36149067	+	1	NA	NA	NA	-357840	NM_001253355	319415	Mm.332442	NM_001081208	ENSMUSG00000044499	Hs3st5	D930005L05Rik|Gm1151|Hs3ost5	heparan sulfate (glucosamine) 3-O-sulfotransferase 5	protein-coding	0.000000	0.442786	
mm_30535.1	chr4	3574825	3575025	+	1	NA	NA	NA	46	NM_054089	116940	Mm.171323	NM_054089	ENSMUSG00000028233	Tgs1	D4Ertd800e|Ncoa6ip|Pimt	trimethylguanosine synthase 1	protein-coding	0.130000	0.681592	
mm_44717.1	chr5	30949831	30950031	-	1	NA	NA	NA	-135	NR_003522	57742	Mm.389615	NM_021304	ENSMUSG00000006638	Abhd1	LABH-1|LABH1	abhydrolase domain containing 1	protein-coding	0.070000	0.666667	
mm_135953.1	chr16	74502487	74502687	-	1	NA	NA	NA	-91675	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.010000	0.417910	
mm_125300.1	chr15	37232957	37233157	+	1	NA	NA	NA	21	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	0.095000	0.646766	
mm_156120.1	chrX	114907494	114907694	+	1	NA	NA	NA	12	NM_001081661	75097	Mm.50414	NM_001081661	ENSMUSG00000047079	Ube2dnl2	4930524E20Rik	ubiquitin-conjugating enzyme E2D N-terminal like 2	protein-coding	0.005000	0.487562	-33(CTCTTTAAAGGT,+,0.00)
mm_53178.1	chr6	125361216	125361416	+	1	NA	NA	NA	11593	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.015000	0.557214	
mm_108342.1	chr12	80271986	80272186	+	1	NA	NA	NA	-11705	NM_001346669	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.015000	0.527363	
mm_40849.1	chr5	73406143	73406343	+	1	NA	NA	NA	165	NM_181323	231293	Mm.280211	NM_181323	ENSMUSG00000029154	Cwh43	C130090K23Rik|imds-60	cell wall biogenesis 43 C-terminal homolog	protein-coding	0.120000	0.751244	
mm_82718.1	chr9	24724691	24724891	-	1	NA	NA	NA	-28498	NM_001166207	320752	Mm.46158	NM_001166207	ENSMUSG00000085576	Dpy19l2	4932443J21Rik|Gm18376	dpy-19-like 2 (C. elegans)	protein-coding	0.000000	0.358209	-7(TTTTTTAAAGCC,+,0.00)
mm_123399.1	chr14	63436336	63436536	-	1	NA	NA	NA	42	NM_177628	219148	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.130000	0.676617	
mm_92674.1	chr10	80546707	80546907	-	1	NA	NA	NA	-7683	NM_026094	67331	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0.035000	0.631841	
mm_100311.1	chr11	117977997	117978197	+	1	NA	NA	NA	-8731	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.000000	0.616915	
mm_145231.1	chr18	50131267	50131467	+	1	NA	NA	NA	3166	NM_008292	15488	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.000000	0.288557	4(GGCTATATGAGA,-,0.00)
mm_9169.1	chr1	170975975	170976175	-	1	NA	NA	NA	-4	NM_010187	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.025000	0.517413	
mm_72987.1	chr8	92961249	92961449	+	1	NA	NA	NA	302	NM_009209	20538	Mm.57040	NM_009209	ENSMUSG00000055368	Slc6a2	NE-T|NET|Slc6a5	solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	protein-coding	0.080000	0.636816	
mm_83610.1	chr9	48605053	48605253	-	1	NA	NA	NA	-30	NM_010924	18113	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0.010000	0.532338	
mm_152331.1	chr19	9954940	9955140	-	1	NA	NA	NA	-25560	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.010000	0.562189	
mm_56115.1	chr6	87512193	87512393	-	1	NA	NA	NA	-15966	NM_175476	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.015000	0.338308	
mm_90445.1	chr10	127667030	127667230	+	1	NA	NA	NA	7	NR_045171	72243	Mm.482902	NR_045171	ENSMUSG00000040195	1700012D01Rik	-	RIKEN cDNA 1700012D01 gene	ncRNA	0.100000	0.567164	
mm_39569.1	chr5	23432726	23432926	+	1	NA	NA	NA	1527	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.025000	0.582090	
mm_45238.1	chr5	53707220	53707420	-	1	NA	NA	NA	384	NM_009827	12425	Mm.3521	NM_009827	ENSMUSG00000029193	Cckar	AW106902	cholecystokinin A receptor	protein-coding	0.025000	0.527363	
mm_46147.1	chr5	93206356	93206556	-	1	NA	NA	NA	39	NM_017367	12453	Mm.250419	NM_017367	ENSMUSG00000063015	Ccni	-	cyclin I	protein-coding	0.105000	0.616915	
mm_165590.1	chr3	33720018	33720218	+	1	NA	NA	NA	-80065	NM_027619	67120	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	0.000000	0.338308	
mm_46735.1	chr5	110809923	110810123	-	1	NA	NA	NA	58	NM_009469	22241	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	0.120000	0.711443	
mm_147308.1	chr18	40219247	40219447	-	1	NA	NA	NA	52	NM_023311	67180	Mm.270382	NM_023311	ENSMUSG00000024487	Yipf5	2610311I19Rik|AA408236|Yip1a	Yip1 domain family, member 5	protein-coding	0.115000	0.701493	
mm_72986.1	chr8	92960936	92961136	+	1	NA	NA	NA	-11	NM_009209	20538	Mm.57040	NM_009209	ENSMUSG00000055368	Slc6a2	NE-T|NET|Slc6a5	solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2	protein-coding	0.055000	0.592040	
mm_64650.1	chr7	4063103	4063303	-	1	NA	NA	NA	1	NM_001302677	52855	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.005000	0.527363	
mm_142160.1	chr17	36129349	36129549	-	1	NA	NA	NA	-24	NM_001177467	630294	Mm.484916	NM_001177467	ENSMUSG00000092243	Gm7030	EG630294|H2-t9	predicted gene 7030	protein-coding	0.025000	0.542289	-49(TCCTAGAAAAGG,-,0.00)
mm_144173.1	chr18	6733684	6733884	+	1	NA	NA	NA	-31383	NM_181070	19330	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.005000	0.412935	
mm_8630.1	chr1	156303314	156303514	-	1	NA	NA	NA	-66	NM_001134741	214575	Mm.252800	NM_001134741	ENSMUSG00000060985	Tdrd5	Gm103	tudor domain containing 5	protein-coding	0.185000	0.776119	
mm_130052.1	chr15	89169468	89169668	-	1	NA	NA	NA	4383	NM_001159521	140570	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.025000	0.597015	
mm_25018.1	chr3	98013462	98013662	+	1	NA	NA	NA	24	NM_010928	18129	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.135000	0.756219	
mm_80263.1	chr9	72912675	72912875	+	1	NA	NA	NA	-12875	NM_028116	72135	Mm.273605	NM_028116	ENSMUSG00000034910	Pygo1	2600014C22Rik	pygopus 1	protein-coding	0.015000	0.378109	
mm_93308.1	chr10	98744189	98744389	-	1	NA	NA	NA	-170863	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.020000	0.432836	-68(CACTTTATAAAC,-,0.00),-66(CTTTATAAACAG,+,0.00)
mm_46312.1	chr5	100572074	100572274	-	1	NA	NA	NA	31	NM_139198	231507	Mm.34609	NM_139198	ENSMUSG00000029322	Plac8	C15|D5Wsu111e	placenta-specific 8	protein-coding	0.020000	0.467662	
mm_102249.1	chr11	55118769	55118969	-	1	NA	NA	NA	20884	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.050000	0.537313	
mm_159491.1	chr4	42655150	42655350	+	1	NA	NA	NA	-1	NM_001199959	100040048	Mm.6660	NM_001199959	ENSMUSG00000096826	Ccl27b	Ctack|ENSMUSG00000066202|Scya27b	chemokine (C-C motif) ligand 27b	protein-coding	0.020000	0.557214	
mm_148941.1	chr19	7056800	7057000	+	1	NA	NA	NA	132	NM_134147	107227	Mm.439977	NM_134147	ENSMUSG00000036278	Macrod1	AI604841|AW743046|D930010J01Rik|Lrp16	MACRO domain containing 1	protein-coding	0.120000	0.731343	
mm_23272.1	chr3	51652821	51653021	+	1	NA	NA	NA	-8258	NM_174995	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.025000	0.597015	
mm_117149.1	chr13	61202108	61202308	-	1	NA	NA	NA	1184	NM_021445	58518	Mm.143794	NM_021445	ENSMUSG00000021441	Cts6	1600022N02Rik	cathepsin 6	protein-coding	0.005000	0.402985	
mm_144105.1	chr18	3542396	3542596	+	1	NA	NA	NA	34539	NM_026505	68010	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	0.050000	0.621891	
mm_74915.1	chr8	25499485	25499685	-	1	NA	NA	NA	-19174	NM_001079909	14182	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.030000	0.432836	
mm_5065.1	chr1	195017066	195017266	+	1	NA	NA	NA	-233	NR_015566	320977	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0.015000	0.552239	
mm_166846.1	chr7	19696504	19696704	+	1	NA	NA	NA	1794	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.080000	0.671642	
mm_43565.1	chr5	137630770	137630970	+	1	NA	NA	NA	1747	NR_033148	100316903	Mm.200763	NR_033148		Gm20605	Lrch4-sap25	predicted gene 20605	ncRNA	0.010000	0.577114	
mm_81610.1	chr9	110709906	110710106	+	1	NA	NA	NA	32604	NM_001083936	19228	Mm.3542	NM_011199	ENSMUSG00000032492	Pth1r	PPR|Pthr|Pthr1	parathyroid hormone 1 receptor	protein-coding	0.010000	0.626866	
mm_77771.1	chr9	3007325	3007525	+	1	NA	NA	NA	31318	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.020000	0.318408	
mm_128308.1	chr15	37791928	37792128	-	1	NA	NA	NA	-28	NM_001170866	52589	Mm.283370	NM_134094	ENSMUSG00000051359	Ncald	AI848120|D030020D09Rik|D15Ertd412e	neurocalcin delta	protein-coding	0.125000	0.766169	
mm_99364.1	chr11	101732802	101733002	+	1	NA	NA	NA	-54	NM_144831	217207	Mm.28186	NM_144831	ENSMUSG00000034931	Dhx8	Ddx8|mDEAH6|mKIAA4096	DEAH (Asp-Glu-Ala-His) box polypeptide 8	protein-coding	0.080000	0.557214	
mm_35628.1	chr4	43483493	43483693	-	1	NA	NA	NA	116	NM_019436	54390	Mm.31775	NM_019436	ENSMUSG00000028460	Sit1	Sit	suppression inducing transmembrane adaptor 1	protein-coding	0.020000	0.567164	
mm_61882.1	chr7	89632462	89632662	+	1	NA	NA	NA	-256	NM_181407	109264	Mm.334011	NM_181407	ENSMUSG00000030621	Me3	1700020C08Rik|B230207H15Rik	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding	0.020000	0.582090	
mm_102851.1	chr11	69395037	69395237	-	1	NA	NA	NA	209	NM_001045525	327951	Mm.415669	NM_001045525	ENSMUSG00000044795	Cyb5d1	Gm740	cytochrome b5 domain containing 1	protein-coding	0.045000	0.532338	81(CTTTTTAGGGGA,+,0.00)
mm_26920.1	chr3	20249423	20249623	-	1	NA	NA	NA	-7342	NM_007753	12873	Mm.1135	NM_007753	ENSMUSG00000001865	Cpa3	MC-CPA	carboxypeptidase A3, mast cell	protein-coding	0.005000	0.378109	
mm_115630.1	chr13	12106775	12106975	-	1	NA	NA	NA	70	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.130000	0.820896	
mm_127322.1	chr15	100304086	100304286	+	1	NA	NA	NA	-631	NM_027334	70152	Mm.488086	NM_027334	ENSMUSG00000054619	Mettl7a1	2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1	methyltransferase like 7A1	protein-coding	0.010000	0.407960	-82(TACTTTAAATGG,-,0.00),-80(CTTTAAATGGGC,+,0.00)
mm_74926.1	chr8	25597513	25597713	-	1	NA	NA	NA	-126	NM_173012	270035	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	0.095000	0.656716	
mm_145254.1	chr18	52528679	52528879	+	1	NA	NA	NA	942	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.070000	0.587065	
mm_3905.1	chr1	161875926	161876126	+	1	NA	NA	NA	635	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.025000	0.492537	
mm_140171.1	chr17	80307364	80307564	+	1	NA	NA	NA	57	NM_001145452	381112	Mm.360004	NM_001145452	ENSMUSG00000054901	Arhgef33	Gm941	Rho guanine nucleotide exchange factor (GEF) 33	protein-coding	0.005000	0.452736	-92(TCATTTAAAAGC,-,0.00)
mm_6138.1	chr1	64737504	64737704	-	1	NA	NA	NA	146	NM_001042659	14367	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0.140000	0.781095	
mm_15134.1	chr2	153943827	153944027	+	1	NA	NA	NA	3065	NM_001034875	381399	Mm.315572	NM_001034875	ENSMUSG00000074665	Bpifb4	Gm1006|Lplunc4	BPI fold containing family B, member 4	protein-coding	0.035000	0.547264	
mm_155270.1	chrX	59589189	59589389	+	1	NA	NA	NA	-3717	NM_001290414	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding	0.020000	0.497512	66(TTGTTTAAAGGG,-,0.00)
mm_169353.1	chr14	22835733	22835933	-	1	NA	NA	NA	258738	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA	0.065000	0.656716	
mm_147966.1	chr18	67228777	67228977	-	1	NA	NA	NA	16953	NM_172630	225651	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	A530095G11	metallophosphoesterase 1	protein-coding	0.020000	0.427861	
mm_154310.1	chr19	61228291	61228491	-	1	NA	NA	NA	27	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.040000	0.631841	
mm_120283.1	chr14	63132533	63132733	+	1	NA	NA	NA	10171	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.005000	0.527363	
mm_51224.1	chr6	71372556	71372756	+	1	NA	NA	NA	-771	NM_009857	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.010000	0.572139	
mm_111072.1	chr12	80132712	80132912	-	1	NA	NA	NA	32	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.145000	0.731343	
mm_169921.1	chr16	57391167	57391367	-	1	NA	NA	NA	37990	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.085000	0.527363	45(AACTTTAAATGG,-,0.00)
mm_65269.1	chr7	23357668	23357868	-	1	NA	NA	NA	-28121	NM_001039143	23968	Mm.333653	NM_011860	ENSMUSG00000015721	Nlrp5	Mater|Nalp5|Op1|PAN11	NLR family, pyrin domain containing 5	protein-coding	0.040000	0.472637	
mm_124450.1	chr14	118925210	118925410	-	1	NA	NA	NA	160	NM_025943	66573	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	0.075000	0.676617	
mm_147992.1	chr18	67641239	67641439	-	1	NA	NA	NA	-3	NM_001081073	225659	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0.145000	0.716418	
mm_15188.1	chr2	154202474	154202674	+	1	NA	NA	NA	2194	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.020000	0.582090	
mm_48005.1	chr5	136161301	136161501	-	1	NA	NA	NA	9255	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.025000	0.601990	
mm_88933.1	chr10	81266605	81266805	+	1	NA	NA	NA	221	NM_025317	66047	Mm.43397	NM_025317	ENSMUSG00000034932	Mrpl54	0610008M19Rik|D10Sut1e	mitochondrial ribosomal protein L54	protein-coding	0.090000	0.621891	
mm_142277.1	chr17	39848220	39848420	-	1	NA	NA	NA	5323	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.115000	0.721393	
mm_162167.1	chrX	99821003	99821203	+	1	NA	NA	NA	34	NM_001081283	620592	Mm.388976	NM_001081283	ENSMUSG00000071719	Tmem28	EG620592|Fam155b|Tnen28	transmembrane protein 28	protein-coding	0.105000	0.691542	
mm_44308.1	chr5	8997069	8997269	-	1	NA	NA	NA	-23	NM_023733	74114	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.105000	0.711443	
mm_7780.1	chr1	131276801	131277001	-	1	NA	NA	NA	2662	NM_019777	56489	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.000000	0.567164	
mm_89248.1	chr10	87858978	87859178	+	1	NA	NA	NA	26	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.020000	0.447761	
mm_118017.1	chr13	100780080	100780280	-	1	NA	NA	NA	-4281	NM_021886	26886	Mm.273502	NM_021886	ENSMUSG00000045273	Cenph	1700021I11Rik|2410018A12Rik|2610042E16Rik|2810046K12Rik|AU044255|CENP-H|ENP	centromere protein H	protein-coding	0.015000	0.393035	2(GTTTATAAAAGC,-,0.00)
mm_166651.1	chr6	86607683	86607883	+	1	NA	NA	NA	-20391	NM_026414	67855	Mm.183043	NM_026414	ENSMUSG00000033508	Asprv1	2300003P22Rik|AA986851|SASP|SASPase|Taps	aspartic peptidase, retroviral-like 1	protein-coding	0.000000	0.562189	
mm_91600.1	chr10	41072185	41072385	-	1	NA	NA	NA	-701	NM_199058	140741	Mm.290693	NM_199058	ENSMUSG00000046922	Gpr6	AI852874|Gm233	G protein-coupled receptor 6	protein-coding	0.085000	0.656716	
mm_132241.1	chr16	32750823	32751023	+	1	NA	NA	NA	15037	NM_080457	140474	Mm.214599	NM_080457	ENSMUSG00000079620	Muc4	4933405I11Rik|Asgp	mucin 4	protein-coding	0.005000	0.432836	
mm_139941.1	chr17	71183458	71183658	+	1	NA	NA	NA	-420	NM_022882	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.170000	0.815920	
mm_30181.1	chr3	144232007	144232207	-	1	NA	NA	NA	-26852	NM_010723	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.020000	0.452736	
mm_98.1	chr1	9377551	9377751	+	1	NA	NA	NA	-77774	NM_001290392	71096	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	0.000000	0.313433	
mm_118094.1	chr13	103850687	103850887	-	1	NA	NA	NA	69799	NM_001289473	59079	Mm.277354	NM_021563	ENSMUSG00000021709	Erbin	1700028E05Rik|Erbb2ip|mKIAA1225	Erbb2 interacting protein	protein-coding	0.020000	0.402985	-93(AGGTTTAAAAAG,-,0.00)
mm_20996.1	chr2	152332288	152332488	-	1	NA	NA	NA	37	NM_001083921	24105	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0.110000	0.666667	
mm_151498.1	chr19	58727965	58728165	+	1	NA	NA	NA	-822	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.005000	0.492537	
mm_41472.1	chr5	91517610	91517810	+	1	NA	NA	NA	10	NM_145562	231440	Mm.5002	NM_145562	ENSMUSG00000034981	Parm1	2210012L08Rik|9130213B05Rik|W91666	prostate androgen-regulated mucin-like protein 1	protein-coding	0.105000	0.726368	
mm_112561.1	chr13	13275614	13275814	+	1	NA	NA	NA	92998	NM_001311129	107849	Mm.392548	NM_181852	ENSMUSG00000055360	Prl2c5	Ghd3|MRP-4|Mrpplf4|PLF-4	prolactin family 2, subfamily c, member 5	protein-coding	0.005000	0.313433	
mm_57403.1	chr6	124864827	124865027	-	1	NA	NA	NA	-1010	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.010000	0.557214	-59(TCCTTTATGGAG,+,0.00)
mm_76666.1	chr8	93379677	93379877	-	1	NA	NA	NA	-42568	NM_021456	12623	Mm.22720	NM_021456	ENSMUSG00000057074	Ces1g	Ces-1|Ces1|Ses-1	carboxylesterase 1G	protein-coding	0.005000	0.462687	
mm_145535.1	chr18	60804983	60805183	+	1	NA	NA	NA	1234	NM_010545	16149	Mm.439737	NM_010545	ENSMUSG00000024610	Cd74	CLIP|DHLAG|HLADG|Ia-GAMMA|Ii	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	protein-coding	0.010000	0.447761	
mm_25741.1	chr3	122924278	122924478	+	1	NA	NA	NA	-19	NM_024461	67704	Mm.24219	NM_024461	ENSMUSG00000054091	1810037I17Rik	5730414I01Rik	RIKEN cDNA 1810037I17 gene	protein-coding	0.130000	0.691542	
mm_95945.1	chr11	58386642	58386842	+	1	NA	NA	NA	6096	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.030000	0.462687	
mm_139089.1	chr17	46832281	46832481	+	1	NA	NA	NA	-968	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.015000	0.497512	-89(CCATTTCAAGCC,+,0.00)
mm_150966.1	chr19	46500147	46500347	+	1	NA	NA	NA	-1401	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.075000	0.661692	
mm_35232.1	chr4	19708925	19709125	-	1	NA	NA	NA	-21	NR_074090	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.145000	0.786070	
mm_113356.1	chr13	32465353	32465553	+	1	NA	NA	NA	-126909	NM_146041	218138	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	0.005000	0.502488	67(GGACTTAAAGGG,-,0.00)
mm_21487.1	chr2	163087724	163087924	-	1	NA	NA	NA	1777	NM_026630	68236	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	0.015000	0.492537	
mm_134339.1	chr16	16542078	16542278	-	1	NA	NA	NA	-14767	NM_001301818	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.020000	0.417910	
mm_75437.1	chr8	47352260	47352460	-	1	NA	NA	NA	-12	NM_175162	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.015000	0.462687	
mm_113876.1	chr13	48869983	48870183	+	1	NA	NA	NA	802	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.070000	0.696517	
mm_91311.1	chr10	24921798	24921998	-	1	NA	NA	NA	5572	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.000000	0.492537	
mm_21240.1	chr2	156154195	156154395	-	1	NA	NA	NA	10062	NM_025946	67067	Mm.371623	NM_025946	ENSMUSG00000067847	Romo1	2010100O12Rik|AI853864	reactive oxygen species modulator 1	protein-coding	0.010000	0.338308	
mm_166638.1	chr6	83179574	83179774	+	1	NA	NA	NA	85	NM_007835	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.035000	0.601990	
mm_166189.1	chr5	33105001	33105201	-	1	NA	NA	NA	882	NM_019810	20537	Mm.25237	NM_019810	ENSMUSG00000011034	Slc5a1	Sglt1	solute carrier family 5 (sodium/glucose cotransporter), member 1	protein-coding	0.005000	0.492537	
mm_113148.1	chr13	24741101	24741301	+	1	NA	NA	NA	20736	NM_020567	57441	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.025000	0.527363	
mm_68439.1	chr7	109960369	109960569	-	1	NA	NA	NA	1	NM_001311139	19347	Mm.21904	NM_021494	ENSMUSG00000035901	Dennd5a	1500012B19Rik|AJ245569|AW496491|ORF37|Rab6ip1|mKIAA1091	DENN/MADD domain containing 5A	protein-coding	0.120000	0.746269	
mm_42878.1	chr5	122284285	122284485	+	1	NA	NA	NA	-13	NM_177242	320717	Mm.489670	NM_177242	ENSMUSG00000038582	Pptc7	9130017A15Rik|AA672638|AI848390|TA-PP2C	PTC7 protein phosphatase homolog	protein-coding	0.135000	0.781095	
mm_13698.1	chr2	117123125	117123325	+	1	NA	NA	NA	2154	NM_033524	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.025000	0.477612	
mm_38228.1	chr4	136010440	136010640	-	1	NA	NA	NA	11109	NM_013736	27224	Mm.27663	NM_013736	ENSMUSG00000028668	Eloa	110kDa|AA408125|Tceb3|Tceb3a	elongin A	protein-coding	0.040000	0.557214	
mm_164585.1	chr17	26087153	26087353	+	1	NA	NA	NA	2911	NM_011933	26378	Mm.292869	NM_011933	ENSMUSG00000036775	Decr2	-	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	protein-coding	0.020000	0.487562	
mm_39919.1	chr5	31526912	31527112	+	1	NA	NA	NA	17	NM_001347328	20534	Mm.352407	NM_009206	ENSMUSG00000029141	Slc4a1ap	kanadaptin	solute carrier family 4 (anion exchanger), member 1, adaptor protein	protein-coding	0.050000	0.582090	
mm_115242.1	chr13	110394389	110394589	+	1	NA	NA	NA	-555	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.045000	0.582090	
mm_97147.1	chr11	75460599	75460799	+	1	NA	NA	NA	-840	NR_030711	100042498	Mm.482242	NR_030711	ENSMUSG00000085148	Mir22hg	2210403K04Rik|mir-22	Mir22 host gene (non-protein coding)	ncRNA	0.035000	0.462687	72(CTCTCTAAAAGT,-,0.00)
mm_28195.1	chr3	88143526	88143726	-	1	NA	NA	NA	1254	NM_001310593	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.015000	0.577114	
mm_64558.1	chr7	144742013	144742213	+	1	NA	NA	NA	-3521	NM_001242349	101772	Mm.26700	NM_178642	ENSMUSG00000031075	Ano1	Tmem16a	anoctamin 1, calcium activated chloride channel	protein-coding	0.020000	0.577114	
mm_59398.1	chr7	26764575	26764775	+	1	NA	NA	NA	7533	NM_007814	13090	Mm.14098	NM_007814	ENSMUSG00000066704	Cyp2b19	CYPIIB19	cytochrome P450, family 2, subfamily b, polypeptide 19	protein-coding	0.000000	0.407960	
mm_107690.1	chr12	55361270	55361470	+	1	NA	NA	NA	-9325	NR_035430	100316807		NR_035430	ENSMUSG00000080645	Mir1198	Mirn1198|mmu-mir-1198	microRNA 1198	ncRNA	0.010000	0.338308	-80(CCCTATTAAAGA,-,0.00),-54(CCTTTTAGAATG,+,0.00)
mm_160191.1	chr7	57386986	57387186	-	1	NA	NA	NA	-186	NR_033504	791383	Mm.403104	NR_033504	ENSMUSG00000055048	Gm9962	ENSMUSG00000055048	predicted gene 9962	ncRNA	0.110000	0.751244	
mm_115086.1	chr13	102698407	102698607	+	1	NA	NA	NA	4949	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.015000	0.492537	
mm_75729.1	chr8	69184153	69184353	-	1	NA	NA	NA	-24793	NM_001013379	234358	Mm.334577	NM_001013379	ENSMUSG00000059897	Zfp930	-	zinc finger protein 930	protein-coding	0.080000	0.716418	
mm_147443.1	chr18	46525761	46525961	-	1	NA	NA	NA	110	NM_173423	240263	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.135000	0.736318	
mm_33737.1	chr4	134118497	134118697	+	1	NA	NA	NA	10156	NM_080559	73723	Mm.22240	NM_080559	ENSMUSG00000028843	Sh3bgrl3	1110004L05Rik|AU022188	SH3 domain binding glutamic acid-rich protein-like 3	protein-coding	0.040000	0.582090	
mm_22459.1	chr3	3188028	3188228	+	1	NA	NA	NA	-319902	NM_013920	30942	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.000000	0.378109	
mm_25812.1	chr3	127790713	127790913	+	1	NA	NA	NA	900	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.060000	0.636816	
mm_54663.1	chr6	39202896	39203096	-	1	NA	NA	NA	3777	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|ENSMUSG00000073143|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.005000	0.253731	
mm_100798.1	chr11	4947020	4947220	-	1	NA	NA	NA	-401	NM_001243043	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.145000	0.741294	
mm_16780.1	chr2	9887733	9887933	-	1	NA	NA	NA	1707	NR_040511	77682	Mm.488621	NR_040511	ENSMUSG00000079602	9230102O04Rik	-	RIKEN cDNA 9230102O04 gene	ncRNA	0.005000	0.572139	
mm_57356.1	chr6	124757153	124757353	-	1	NA	NA	NA	-766	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.020000	0.477612	
mm_135089.1	chr16	34566409	34566609	-	1	NA	NA	NA	-52482	NM_177357	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.010000	0.407960	
mm_70604.1	chr8	13354342	13354542	+	1	NA	NA	NA	15638	NM_009361	21781	Mm.925	NM_009361	ENSMUSG00000038482	Tfdp1	Dp1|Drtf1	transcription factor Dp 1	protein-coding	0.020000	0.512438	
mm_136129.1	chr16	85901710	85901910	-	1	NA	NA	NA	-685	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0.045000	0.601990	-65(CCATTTATACAC,+,0.00)
mm_19248.1	chr2	84773147	84773347	-	1	NA	NA	NA	2182	NM_009776	12258	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.015000	0.537313	
mm_41101.1	chr5	87694776	87694976	+	1	NA	NA	NA	4549	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.005000	0.522388	
mm_54051.1	chr6	13838571	13838771	-	1	NA	NA	NA	1271	NM_001330666	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.100000	0.631841	
mm_130963.1	chr15	103314978	103315178	-	1	NA	NA	NA	-4640	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.045000	0.661692	
mm_25264.1	chr3	104788749	104788949	+	1	NA	NA	NA	-185	NM_001291859	11853	Mm.262	NM_007484	ENSMUSG00000002233	Rhoc	AI324259|Arh9|Arhc	ras homolog family member C	protein-coding	0.080000	0.721393	
mm_54683.1	chr6	39419921	39420121	-	1	NA	NA	NA	-245	NM_001311109	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.135000	0.726368	
mm_95429.1	chr11	50200566	50200766	+	1	NA	NA	NA	10154	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.015000	0.492537	-12(TGCCTGAAAAGG,-,0.00)
mm_10032.1	chr1	192137923	192138123	-	1	NA	NA	NA	17	NM_001290278	214742	Mm.207457	NM_144814	ENSMUSG00000037395	Rcor3	4921514E24Rik|C730034D20Rik|E130101E15Rik	REST corepressor 3	protein-coding	0.145000	0.796020	
mm_78861.1	chr9	44397267	44397467	+	1	NA	NA	NA	272	NM_001293630	14385	Mm.30087	NM_008063	ENSMUSG00000032114	Slc37a4	100043178|G6PT|G6pt1|GSD-1b|mG6PT	solute carrier family 37 (glucose-6-phosphate transporter), member 4	protein-coding	0.085000	0.691542	
mm_8680.1	chr1	156937739	156937939	-	1	NA	NA	NA	1548	NM_001159966	78255	Mm.28376	NM_023884	ENSMUSG00000026594	Ralgps2	1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161	Ral GEF with PH domain and SH3 binding motif 2	protein-coding	0.005000	0.398010	
mm_35522.1	chr4	41206962	41207162	-	1	NA	NA	NA	68073	NM_026872	68926	Mm.41864	NM_026872	ENSMUSG00000028433	Ubap2	1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491	ubiquitin-associated protein 2	protein-coding	0.025000	0.507463	-52(CCATTTATAGAC,+,0.00)
mm_53226.1	chr6	127149307	127149507	+	1	NA	NA	NA	18	NR_040274	77558	Mm.358918	NR_040273	ENSMUSG00000097166	9330179D12Rik	-	RIKEN cDNA 9330179D12 gene	ncRNA	0.070000	0.592040	
mm_7194.1	chr1	92950616	92950816	-	1	NA	NA	NA	-126	NR_015525	100037260	Mm.442236	NR_015525	ENSMUSG00000100632	9430060I03Rik	-	RIKEN cDNA 9430060I03 gene	ncRNA	0.020000	0.567164	
mm_102352.1	chr11	58207490	58207690	-	1	NA	NA	NA	-7387	NM_019440	54396	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	0.015000	0.402985	
mm_8986.1	chr1	165697362	165697562	-	1	NA	NA	NA	10632	NM_178593	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.000000	0.248756	
mm_36472.1	chr4	82705805	82706005	-	1	NA	NA	NA	153756	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0.015000	0.477612	
mm_147323.1	chr18	42261896	42262096	-	1	NA	NA	NA	75	NM_134137	107045	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|mKIAA1352	leucyl-tRNA synthetase	protein-coding	0.035000	0.552239	
mm_111326.1	chr12	86469947	86470147	-	1	NA	NA	NA	48403	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.055000	0.542289	
mm_168929.1	chr12	64786096	64786296	+	1	NA	NA	NA	-131715	NM_001025605	217648	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	0.070000	0.512438	
mm_5513.1	chr1	37536134	37536334	-	1	NA	NA	NA	170	NM_001290801	269181	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.025000	0.452736	
mm_64930.1	chr7	16285899	16286099	-	1	NA	NA	NA	796	NM_001136471	243846	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0.020000	0.557214	
mm_166079.1	chr4	137484596	137484796	+	1	NA	NA	NA	15893	NM_008305	15530	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	0.005000	0.592040	
mm_139580.1	chr17	57080605	57080805	+	1	NA	NA	NA	-2195	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.025000	0.552239	
mm_104012.1	chr11	85234791	85234991	-	1	NA	NA	NA	229	NM_025825	66884	Mm.271997	NM_025825	ENSMUSG00000018481	Appbp2	1300003O07Rik|AI465480|PAT1	amyloid beta precursor protein (cytoplasmic tail) binding protein 2	protein-coding	0.150000	0.766169	
mm_80992.1	chr9	103368432	103368632	+	1	NA	NA	NA	-2752	NM_001134426	321022	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.005000	0.457711	
mm_151923.1	chr19	5799893	5800093	-	1	NA	NA	NA	2679	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.373134	
mm_86327.1	chr9	123061688	123061888	-	1	NA	NA	NA	27047	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.015000	0.467662	
mm_143380.1	chr17	67950890	67951090	-	1	NA	NA	NA	-50	NM_001347410	268970	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0.020000	0.447761	-6(CTTTTAATAGAG,+,0.00)
mm_149661.1	chr19	18730540	18730740	+	1	NA	NA	NA	17404	NM_177640	225995	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	0.015000	0.497512	
mm_88245.1	chr10	72657232	72657432	+	1	NA	NA	NA	2486	NM_001293683	52696	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	0.015000	0.532338	
mm_121603.1	chr14	8114316	8114516	-	1	NA	NA	NA	16203	NM_178279	218699	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|MONaKA	PX domain containing serine/threonine kinase	protein-coding	0.010000	0.437811	
mm_146679.1	chr18	12819753	12819953	-	1	NA	NA	NA	54	NR_045524	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.010000	0.402985	
mm_239.1	chr1	19208924	19209124	+	1	NA	NA	NA	110	NM_001286340	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.030000	0.447761	
mm_13378.1	chr2	103795855	103796055	+	1	NA	NA	NA	1123	NM_001111290	53872	Mm.427589	NM_016739	ENSMUSG00000027184	Caprin1	AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105	cell cycle associated protein 1	protein-coding	0.035000	0.597015	
mm_83583.1	chr9	48340701	48340901	-	1	NA	NA	NA	97	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.025000	0.492537	-16(CTCTCTAAAAGC,-,0.00)
mm_21515.1	chr2	163627886	163628086	-	1	NA	NA	NA	-16864	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.015000	0.427861	
mm_78112.1	chr9	20642607	20642807	+	1	NA	NA	NA	99	NM_013911	30843	Mm.24608	NM_013911	ENSMUSG00000066892	Fbxl12	3110048D16Rik|Fbl12	F-box and leucine-rich repeat protein 12	protein-coding	0.035000	0.592040	
mm_66701.1	chr7	45920588	45920788	-	1	NA	NA	NA	161	NM_001146346	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.020000	0.552239	
mm_74000.1	chr8	120756226	120756426	+	1	NA	NA	NA	17687	NM_001301811	15900	Mm.334861	NM_008320	ENSMUSG00000041515	Irf8	AI893568|ICSBP|IRF-8|Icsbp1|Myls	interferon regulatory factor 8	protein-coding	0.015000	0.567164	
mm_19140.1	chr2	80447157	80447357	-	1	NA	NA	NA	139	NM_011356	20378	Mm.427436	NM_011356	ENSMUSG00000027004	Frzb	Frp|Sfrp3|frezzled|fritz|frzb-1	frizzled-related protein	protein-coding	0.025000	0.502488	
mm_71730.1	chr8	61984617	61984817	+	1	NA	NA	NA	56630	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.015000	0.432836	
mm_18364.1	chr2	59160530	59160730	-	1	NA	NA	NA	-220	NM_026361	227937	Mm.260938	NM_026361	ENSMUSG00000026991	Pkp4	5031422I09Rik|9430019K17Rik|Armrp|p0071	plakophilin 4	protein-coding	0.055000	0.606965	
mm_25458.1	chr3	108534030	108534230	+	1	NA	NA	NA	2392	NM_001033304	229722	Mm.316890	NM_001033304	ENSMUSG00000040412	5330417C22Rik	BB183350	RIKEN cDNA 5330417C22 gene	protein-coding	0.010000	0.427861	
mm_67883.1	chr7	99348924	99349124	-	1	NA	NA	NA	4215	NM_009825	12406	Mm.22708	NM_009825	ENSMUSG00000070436	Serpinh1	BERF-1|Cbp1|Cbp2|Hsp47|J6|Serpinh2|gp46	serine (or cysteine) peptidase inhibitor, clade H, member 1	protein-coding	0.085000	0.621891	
mm_12915.1	chr2	84936495	84936695	+	1	NA	NA	NA	-51	NM_021398	58207	Mm.290729	NM_021398	ENSMUSG00000027074	Slc43a3	Eeg1|SEEEG-1	solute carrier family 43, member 3	protein-coding	0.035000	0.601990	
mm_130777.1	chr15	101488116	101488316	-	1	NA	NA	NA	3087	NM_016879	53622	Mm.347934	NM_016879		Krt85	AA589597|BB007925|Hb5|Krt2-18	keratin 85	protein-coding	0.015000	0.562189	
mm_37821.1	chr4	131873331	131873531	-	1	NA	NA	NA	-208	NM_020587	57317	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0.120000	0.666667	
mm_83630.1	chr9	49079268	49079468	-	1	NA	NA	NA	-23411	NM_030709	80893	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	0.020000	0.477612	-22(TTCTTTAAAAAG,-,0.00),-20(CTTTAAAAAGCA,+,0.00)
mm_164256.1	chr15	99692094	99692294	+	1	NA	NA	NA	439	NM_001289791	11419	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	0.030000	0.616915	
mm_10115.1	chr2	3723100	3723300	+	1	NA	NA	NA	9742	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.000000	0.363184	-60(GAATTTAAAAAG,-,0.00)
mm_2021.1	chr1	87128054	87128254	+	1	NA	NA	NA	3146	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.010000	0.572139	
mm_88418.1	chr10	77191434	77191634	+	1	NA	NA	NA	-25004	NM_009929	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.005000	0.527363	
mm_170529.1	chr19	34583474	34583674	+	1	NA	NA	NA	45	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.000000	0.487562	-76(CCTTATATAATC,+,0.00)
mm_36567.1	chr4	87806184	87806384	-	1	NA	NA	NA	39	NM_001286158	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.015000	0.472637	
mm_99464.1	chr11	102435258	102435458	+	1	NA	NA	NA	5036	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.015000	0.502488	
mm_68704.1	chr7	119720673	119720873	-	1	NA	NA	NA	25	NM_145585	233802	Mm.26392	NM_145585	ENSMUSG00000030942	Thumpd1	6330575P11Rik	THUMP domain containing 1	protein-coding	0.105000	0.646766	
mm_65948.1	chr7	30419737	30419937	-	1	NA	NA	NA	17	NM_011827	23900	Mm.379050	NM_011827	ENSMUSG00000064109	Hcst	DAP10|KAP10	hematopoietic cell signal transducer	protein-coding	0.010000	0.547264	
mm_140036.1	chr17	74339044	74339244	+	1	NA	NA	NA	157	NM_016962	50850	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	0.155000	0.786070	
mm_125969.1	chr15	76274296	76274496	+	1	NA	NA	NA	-4557	NR_045747	100038659	Mm.448549	NR_045747		Mirt2	ENSMUSG00000075583|Gm10872|Gm24562	myocardial infraction associated transcript 2	ncRNA	0.000000	0.412935	
mm_145726.1	chr18	64075197	64075397	+	1	NA	NA	NA	-179062	NM_009182	20451	Mm.252110	NM_009182	ENSMUSG00000056812	St8sia3	AI847333|ST8SiaIII|Siat8c	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3	protein-coding	0.010000	0.333333	
mm_84039.1	chr9	57765817	57766017	-	1	NA	NA	NA	-57	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.080000	0.577114	
mm_29952.1	chr3	133091723	133091923	-	1	NA	NA	NA	-32	NM_027927	71793	Mm.246726	NM_027927	ENSMUSG00000028016	Ints12	1110020M19Rik|2810027J24Rik|4930529N21Rik|A230056J18Rik|AI666778|Phf22|int12	integrator complex subunit 12	protein-coding	0.075000	0.587065	
mm_61603.1	chr7	80027396	80027596	+	1	NA	NA	NA	1268	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.095000	0.616915	
mm_160169.1	chr7	45014244	45014444	-	1	NA	NA	NA	-1857	NR_106021	102466218		NR_106021	ENSMUSG00000098839	Mir7054	Gm27557|mmu-mir-7054	microRNA 7054	ncRNA	0.010000	0.477612	
mm_17694.1	chr2	32337956	32338156	-	1	NA	NA	NA	15273	NM_001301737	13429	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	0.040000	0.606965	
mm_91812.1	chr10	54014451	54014651	-	1	NA	NA	NA	61245	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.025000	0.442786	
mm_77438.1	chr8	121580424	121580624	-	1	NA	NA	NA	-1718	NM_133765	76454	Mm.24829	NM_133765	ENSMUSG00000052934	Fbxo31	1110003O08Rik|2310046N15Rik|Fbx14|Fbxo14	F-box protein 31	protein-coding	0.015000	0.507463	
mm_143812.1	chr17	83706762	83706962	-	1	NA	NA	NA	699	NM_001171052	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.025000	0.542289	
mm_137478.1	chr17	26885070	26885270	+	1	NA	NA	NA	-31921	NM_053173	16580	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0.065000	0.577114	
mm_166430.1	chr5	137165941	137166141	-	1	NA	NA	NA	-49834	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.050000	0.582090	
mm_7295.1	chr1	97908517	97908717	-	1	NA	NA	NA	138445	NM_026250	252876	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding	0.005000	0.313433	-3(TCTTATAAAACC,+,0.00)
mm_101026.1	chr11	8579318	8579518	-	1	NA	NA	NA	85117	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.005000	0.417910	
mm_80229.1	chr9	72669894	72670094	+	1	NA	NA	NA	7647	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.020000	0.412935	
mm_86582.1	chr10	13008330	13008530	+	1	NA	NA	NA	-20	NM_175102	66125	Mm.29743	NM_175102	ENSMUSG00000078348	Sf3b5	10kDa|1110005L13Rik|AU043053|Sf3b10	splicing factor 3b, subunit 5	protein-coding	0.100000	0.611940	
mm_148737.1	chr19	5924878	5925078	+	1	NA	NA	NA	-162	NM_026772	104252	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.065000	0.582090	
mm_98653.1	chr11	96263801	96264001	+	1	NA	NA	NA	-1263	NR_029721	387191		NR_029721	ENSMUSG00000065546	Mir196a-1	Mirn196|Mirn196a-1|miR-196|mir-196a-1	microRNA 196a-1	ncRNA	0.030000	0.567164	
mm_38213.1	chr4	135946274	135946474	-	1	NA	NA	NA	-79	NM_008254	15356	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0.045000	0.587065	
mm_102725.1	chr11	67237490	67237690	-	1	NA	NA	NA	-222	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.010000	0.407960	-17(TTCTTTATAAGC,-,0.00)
mm_22577.1	chr3	10366845	10367045	+	1	NA	NA	NA	-28	NM_025519	66371	Mm.366147	NM_025519	ENSMUSG00000027536	Chmp4c	2010012P02Rik|2210015K02Rik|2310010I16Rik|Shax3|Snf7-3	charged multivesicular body protein 4C	protein-coding	0.065000	0.646766	
mm_83427.1	chr9	44980314	44980514	-	1	NA	NA	NA	17	NM_009850	12502	Mm.335106	NM_009850	ENSMUSG00000002033	Cd3g	Ctg-3|Ctg3|T3g	CD3 antigen, gamma polypeptide	protein-coding	0.005000	0.606965	
mm_84890.1	chr9	79770308	79770508	-	1	NA	NA	NA	-10555	NM_009945	12866	Mm.152627	NM_009945	ENSMUSG00000032330	Cox7a2	COX7AL|Cox7a3|CoxVIIa-L	cytochrome c oxidase subunit VIIa 2	protein-coding	0.000000	0.407960	
mm_160493.1	chr8	129065392	129065592	-	1	NA	NA	NA	0	NM_029061	74703	Mm.196017	NM_029061	ENSMUSG00000025808	Ccdc7a	4930517G15Rik|4930540C21Rik|Biot2|Ccdc7	coiled-coil domain containing 7A	protein-coding	0.045000	0.611940	
mm_138891.1	chr17	43567896	43568096	+	1	NA	NA	NA	-455	NM_013737	27226	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.030000	0.512438	-32(CTTTTTATACCG,+,0.00)
mm_30619.1	chr4	8553649	8553849	+	1	NA	NA	NA	18105	NM_021518	59021	Mm.397471	NM_021518	ENSMUSG00000047187	Rab2a	9330148M11Rik|C80220|Rab2	RAB2A, member RAS oncogene family	protein-coding	0.000000	0.253731	
mm_57060.1	chr6	122494112	122494312	-	1	NA	NA	NA	-7907	NM_027664	108653	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	0.015000	0.432836	
mm_163792.1	chr14	13284534	13284734	-	1	NA	NA	NA	4	NR_121589	328354	Mm.252404	NM_177813	ENSMUSG00000051729	Gm5087	C630025C03|EG328354	predicted gene 5087	ncRNA	0.055000	0.621891	
mm_112896.1	chr13	20885262	20885462	+	1	NA	NA	NA	91249	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.323383	
mm_85502.1	chr9	106199047	106199247	-	1	NA	NA	NA	86	NM_026447	67905	Mm.23018	NM_026447	ENSMUSG00000020253	Ppm1m	2810423O19Rik|AW610647|C77250|PP2Ceta	protein phosphatase 1M	protein-coding	0.145000	0.786070	
mm_10133.1	chr2	4017636	4017836	+	1	NA	NA	NA	53	NM_001347086	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.015000	0.562189	
mm_18133.1	chr2	45016969	45017169	-	1	NA	NA	NA	6108	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.000000	0.288557	
mm_6467.1	chr1	74036113	74036313	-	1	NA	NA	NA	88234	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.005000	0.517413	
mm_37158.1	chr4	117131353	117131553	-	1	NA	NA	NA	2510	NM_013807	12795	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo-like kinase 3	protein-coding	0.015000	0.567164	
mm_76023.1	chr8	75084992	75085192	-	1	NA	NA	NA	-8526	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.015000	0.462687	
mm_131504.1	chr16	17421200	17421400	+	1	NA	NA	NA	-14986	NM_001001983	224020	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase, catalytic, alpha polypeptide	protein-coding	0.000000	0.378109	
mm_49464.1	chr6	29433048	29433248	+	1	NA	NA	NA	-5	NM_001081185	68794	Mm.39046	NM_026839	ENSMUSG00000068699	Flnc	1110055E19Rik|ABP-280|ABPL|Fln2	filamin C, gamma	protein-coding	0.115000	0.800995	
mm_145641.1	chr18	61117538	61117738	+	1	NA	NA	NA	170	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.015000	0.492537	
mm_76344.1	chr8	84723747	84723947	-	1	NA	NA	NA	22390	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.025000	0.611940	
mm_43321.1	chr5	134986184	134986384	+	1	NA	NA	NA	70	NM_009902	12739	Mm.158662	NM_009902	ENSMUSG00000070473	Cldn3	AI182374|Cpetr2|mRVP1	claudin 3	protein-coding	0.070000	0.641791	
mm_18492.1	chr2	62606175	62606375	-	1	NA	NA	NA	-32254	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.040000	0.422886	
mm_28694.1	chr3	95529445	95529645	-	1	NA	NA	NA	2759	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.010000	0.487562	
mm_116361.1	chr13	40730323	40730523	-	1	NA	NA	NA	34	NM_001122948	21418	Mm.85544	NM_011547	ENSMUSG00000021359	Tfap2a	AP-2|AP2alpha|Ap-2 (a)|Ap2|Ap2tf|Tcfap2a	transcription factor AP-2, alpha	protein-coding	0.020000	0.338308	
mm_139286.1	chr17	48300239	48300439	+	1	NA	NA	NA	301	NM_001033405	328833	Mm.329104	NM_001033405	ENSMUSG00000071068	Treml2	AW049306|Gm750|Tlt2	triggering receptor expressed on myeloid cells-like 2	protein-coding	0.020000	0.611940	
mm_122120.1	chr14	31018923	31019123	-	1	NA	NA	NA	108	NM_153547	30877	Mm.88512	NM_153547	ENSMUSG00000042354	Gnl3	Ns	guanine nucleotide binding protein-like 3 (nucleolar)	protein-coding	0.125000	0.666667	
mm_154701.1	chrX	8271473	8271673	+	1	NA	NA	NA	192	NM_172479	209837	Mm.6055	NM_172479	ENSMUSG00000031170	Slc38a5	C81234|E330031E14|JM24|SN2	solute carrier family 38, member 5	protein-coding	0.010000	0.462687	
mm_96354.1	chr11	67010533	67010733	+	1	NA	NA	NA	-14521	NM_001291042	338369	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	0.025000	0.502488	
mm_74191.1	chr8	123653806	123654006	+	1	NA	NA	NA	-23	NM_133955	69581	Mm.168257	NM_133955	ENSMUSG00000039960	Rhou	2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K	ras homolog family member U	protein-coding	0.180000	0.815920	
mm_79377.1	chr9	54699457	54699657	+	1	NA	NA	NA	-2	NM_021422	58233	Mm.489676	NM_021422	ENSMUSG00000032285	Dnaja4	1110021L12Rik|AV358213|Dj4|Hsj4|mmDjA4	DnaJ heat shock protein family (Hsp40) member A4	protein-coding	0.170000	0.741294	
mm_170786.1	chr2	174980900	174981100	-	1	NA	NA	NA	86769	NM_001085546	664987		NM_001085546	ENSMUSG00000078905	Gm14393	OTTMUSG00000016546	predicted gene 14393	protein-coding	0.015000	0.492537	
mm_132743.1	chr16	44139055	44139255	+	1	NA	NA	NA	-136	NM_007508	11964	Mm.217787	NM_007508	ENSMUSG00000052459	Atp6v1a	AI647066|Atp6a1|Atp6a2|Atp6v1a1|VA68|VPP2	ATPase, H+ transporting, lysosomal V1 subunit A	protein-coding	0.065000	0.487562	
mm_32918.1	chr4	119136617	119136817	+	1	NA	NA	NA	27972	NM_011400	20525	Mm.21002	NM_011400	ENSMUSG00000028645	Slc2a1	Glut-1|Glut1	solute carrier family 2 (facilitated glucose transporter), member 1	protein-coding	0.005000	0.407960	
mm_158429.1	chrX	139871384	139871584	-	1	NA	NA	NA	170	NM_029413	75746	Mm.23269	NM_029413	ENSMUSG00000031434	Morc4	1600017G11Rik|5630401M14Rik|AA117449|Zcwcc2	microrchidia 4	protein-coding	0.095000	0.726368	
mm_167019.1	chr7	64971357	64971557	+	1	NA	NA	NA	-98417	NM_023239	66647	Mm.19944	NM_023239	ENSMUSG00000070520	Ndnl2	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Nsmce3|mage-g1	necdin-like 2	protein-coding	0.000000	0.417910	
mm_102855.1	chr11	69398872	69399072	-	1	NA	NA	NA	-738	NM_025915	67020	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.040000	0.527363	
mm_18898.1	chr2	76713780	76713980	-	1	NA	NA	NA	38565	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.035000	0.482587	
mm_112099.1	chr12	112785161	112785361	-	1	NA	NA	NA	-23714	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.020000	0.537313	
mm_150425.1	chr19	37436523	37436723	+	1	NA	NA	NA	1782	NM_008245	15242	Mm.33896	NM_008245	ENSMUSG00000024986	Hhex	Hex|Hex1|Hhex-rs2|Prh|Prhx	hematopoietically expressed homeobox	protein-coding	0.035000	0.472637	
mm_173312.1	chrY	90734920	90735120	+	1	NA	NA	NA	20030	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.482587	
mm_21148.1	chr2	154407892	154408092	-	1	NA	NA	NA	92	NM_009228	20648	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	0.140000	0.771144	
mm_110851.1	chr12	73198470	73198670	-	1	NA	NA	NA	74853	NM_008612	17420	Mm.246750	NM_008612	ENSMUSG00000021103	Mnat1	E130115E11Rik|MAT1|P36	menage a trois 1	protein-coding	0.000000	0.378109	
mm_139610.1	chr17	57316526	57316726	+	1	NA	NA	NA	37526	NM_001163815	22324	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.005000	0.522388	
mm_172813.1	chr9	123689508	123689708	-	1	NA	NA	NA	-10776	NM_139142	102680	Mm.440867	NM_139142	ENSMUSG00000036814	Slc6a20a	A730081N20Rik|AU022428|Xt3s1|Xtrp3s1	solute carrier family 6 (neurotransmitter transporter), member 20A	protein-coding	0.030000	0.487562	
mm_60942.1	chr7	46919945	46920145	+	1	NA	NA	NA	-115	NM_021884	22088	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	0.135000	0.701493	
mm_32697.1	chr4	116067101	116067301	+	1	NA	NA	NA	7869	NM_025641	66576	Mm.181721	NM_025641	ENSMUSG00000063882	Uqcrh	2210416J04Rik|2310021J10Rik|2610041P16Rik	ubiquinol-cytochrome c reductase hinge protein	protein-coding	0.020000	0.482587	-52(GTTTTTAAAGAG,+,0.00)
mm_66127.1	chr7	31054674	31054874	-	1	NA	NA	NA	79	NM_052991	56188	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	0.030000	0.611940	
mm_25008.1	chr3	97658522	97658722	+	1	NA	NA	NA	410	NM_182997	108097	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.100000	0.716418	
mm_157873.1	chrX	75475546	75475746	-	1	NA	NA	NA	-38651	NM_011692	22327	Mm.8294	NM_011692	ENSMUSG00000031197	Vbp1	VBP-1	von Hippel-Lindau binding protein 1	protein-coding	0.085000	0.522388	-45(ACCTTTAAAAAG,-,0.00)
mm_18613.1	chr2	68409236	68409436	-	1	NA	NA	NA	62645	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.010000	0.323383	
mm_96590.1	chr11	69090625	69090825	+	1	NA	NA	NA	2197	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.015000	0.547264	
mm_62608.1	chr7	106511185	106511385	+	1	NA	NA	NA	-70212	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.487562	-74(TCTTTTAGGGGT,+,0.00)
mm_89551.1	chr10	94719605	94719805	+	1	NA	NA	NA	30915	NM_029852	77048	Mm.296971	NM_029852	ENSMUSG00000020024	Cep83	2600001G24Rik|4921537D05Rik|5730513H21Rik|Ccdc41	centrosomal protein 83	protein-coding	0.005000	0.293532	
mm_98908.1	chr11	98058192	98058392	+	1	NA	NA	NA	-4830	NM_146028	217154	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0.015000	0.527363	-23(GGTTATATAAGG,-,0.00)
mm_46675.1	chr5	109529447	109529647	-	1	NA	NA	NA	29446	NM_016715	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.025000	0.482587	
mm_133597.1	chr16	91464942	91465142	+	1	NA	NA	NA	-62	NR_077219	100503120	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.070000	0.631841	
mm_151096.1	chr19	47854160	47854360	+	1	NA	NA	NA	-713	NM_010362	14873	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0.015000	0.427861	-42(TCATAAATAGCC,+,0.00)
mm_52552.1	chr6	115989895	115990095	+	1	NA	NA	NA	5010	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.015000	0.562189	
mm_24818.1	chr3	95628541	95628741	+	1	NA	NA	NA	3661	NM_001026212	56205	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.020000	0.572139	
mm_162056.1	chrX	8074203	8074403	-	1	NA	NA	NA	10	NM_001290716	20937	Mm.9244	NM_011514	ENSMUSG00000039231	Suv39h1	AI852103|AL022883|DXHXS7466e|H3-K9-HMTase 1|KMT1A|mIS6	suppressor of variegation 3-9 homolog 1 (Drosophila)	protein-coding	0.180000	0.786070	
mm_59433.1	chr7	27130219	27130419	+	1	NA	NA	NA	10364	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.025000	0.507463	
mm_105353.1	chr11	103018614	103018814	-	1	NA	NA	NA	-1567	NM_026551	68087	Mm.277449	NM_026551	ENSMUSG00000020935	Dcakd	3010024O21Rik|6720485C15Rik|AI849483	dephospho-CoA kinase domain containing	protein-coding	0.000000	0.368159	-89(TCTTATAGAGGC,+,0.00)
mm_106102.1	chr11	116273239	116273439	-	1	NA	NA	NA	878	NM_146032	217337	Mm.29655	NM_146032	ENSMUSG00000020780	Srp68	2610024I03Rik	signal recognition particle 68	protein-coding	0.020000	0.398010	
mm_31359.1	chr4	47208186	47208386	+	1	NA	NA	NA	274	NM_009928	12819	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.145000	0.756219	
mm_124533.1	chr14	122451002	122451202	-	1	NA	NA	NA	13	NR_033325	328479	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.090000	0.706468	-20(CGCTCTTAAAGA,-,0.00),-19(GCTCTTAAAGAG,+,0.00),-17(TCTTAAAGAGAC,+,0.00)
mm_128028.1	chr15	25332551	25332751	-	1	NA	NA	NA	81113	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.005000	0.442786	
mm_120101.1	chr14	58085515	58085715	+	1	NA	NA	NA	12929	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.000000	0.238806	72(CTTTTTAGAGAC,+,0.00)
mm_107601.1	chr12	49383840	49384040	+	1	NA	NA	NA	933	NM_008241	15228	Mm.4704	NM_008241	ENSMUSG00000020950	Foxg1	2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1	forkhead box G1	protein-coding	0.095000	0.611940	
mm_46521.1	chr5	105343147	105343347	-	1	NA	NA	NA	3225	NM_001039647	634650	Mm.458435	NM_001039647	ENSMUSG00000092021	Gbp11	EG634650|Gm7141	guanylate binding protein 11	protein-coding	0.015000	0.318408	
mm_11803.1	chr2	43867009	43867209	+	1	NA	NA	NA	118285	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.005000	0.313433	47(GAATATAAAAAG,-,0.00)
mm_79994.1	chr9	67033834	67034034	+	1	NA	NA	NA	9937	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.030000	0.512438	
mm_141552.1	chr17	32189345	32189545	-	1	NA	NA	NA	18	NM_001033163	71932	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9	epoxide hydrolase 3	protein-coding	0.050000	0.572139	
mm_162142.1	chrX	74283817	74284017	+	1	NA	NA	NA	1199	NM_001242615	66826	Mm.268483	NM_181516	ENSMUSG00000009995	Taz	5031411C02Rik|9130012G04Rik|AW107266|AW552613|G4.5	tafazzin	protein-coding	0.005000	0.527363	
mm_68551.1	chr7	114317423	114317623	-	1	NA	NA	NA	-41407	NM_011965	26440	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.010000	0.492537	
mm_145045.1	chr18	39773503	39773703	+	1	NA	NA	NA	106	NM_011033	18459	Mm.9493	NM_011033	ENSMUSG00000051732	Pabpc2	Pabp|Pabp+|Pabp2	poly(A) binding protein, cytoplasmic 2	protein-coding	0.045000	0.671642	
mm_53916.1	chr6	4047463	4047663	-	1	NA	NA	NA	21	NR_131108	78034	Mm.243851	NR_131108	ENSMUSG00000107681	4930528H21Rik	-	RIKEN cDNA 4930528H21 gene	ncRNA	0.005000	0.417910	
mm_61972.1	chr7	90476571	90476771	+	1	NA	NA	NA	-676	NM_026734	68472	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	0.050000	0.542289	
mm_9194.1	chr1	171196138	171196338	-	1	NA	NA	NA	30	NM_025557	66425	Mm.482117	NM_025557	ENSMUSG00000038370	Pcp4l1	1500036F01Rik	Purkinje cell protein 4-like 1	protein-coding	0.040000	0.606965	-33(CACTATAAAAGG,-,0.00)
mm_105424.1	chr11	103697843	103698043	-	1	NA	NA	NA	219	NR_102396	399609	Mm.351922	NR_102388		C130046K22Rik	-	RIKEN cDNA C130046K22 gene	ncRNA	0.110000	0.641791	
mm_23698.1	chr3	68693984	68694184	+	1	NA	NA	NA	2660	NM_008351	16159	Mm.103783	NM_008351	ENSMUSG00000027776	Il12a	IL-12p35|Il-12a|Ll12a|p35	interleukin 12a	protein-coding	0.020000	0.507463	
mm_146038.1	chr18	69575269	69575469	+	1	NA	NA	NA	229648	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.015000	0.363184	
mm_90574.1	chr10	128237952	128238152	+	1	NA	NA	NA	-14	NM_011589	21853	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0.005000	0.512438	-15(CTTTTTAGAGGA,+,0.00)
mm_159294.1	chr2	175067665	175067865	-	1	NA	NA	NA	4	NM_001085546	664987		NM_001085546	ENSMUSG00000078905	Gm14393	OTTMUSG00000016546	predicted gene 14393	protein-coding	0.005000	0.487562	
mm_95992.1	chr11	59192037	59192237	+	1	NA	NA	NA	-185	NM_008193	14923	Mm.3624	NM_008193	ENSMUSG00000020444	Guk1	AA409738|AL033299|AL033300|AV026611|Gmk|Guk-1	guanylate kinase 1	protein-coding	0.070000	0.537313	
mm_81901.1	chr9	119981550	119981750	+	1	NA	NA	NA	3008	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.035000	0.597015	
mm_144185.1	chr18	7868743	7868943	+	1	NA	NA	NA	11	NM_001282093	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.145000	0.781095	
mm_36731.1	chr4	99121151	99121351	-	1	NA	NA	NA	-336	NM_026082	67299	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0.030000	0.527363	
mm_101070.1	chr11	11462321	11462521	-	1	NA	NA	NA	-2	NM_001185153	53604	Mm.9500	NM_015785	ENSMUSG00000020193	Zpbp	4930486K01Rik|Iam38|Sp38	zona pellucida binding protein	protein-coding	0.035000	0.567164	
mm_138574.1	chr17	35424778	35424978	+	1	NA	NA	NA	1	NM_207648	110557	Mm.439827	NM_207648	ENSMUSG00000073409	H2-Q6	0610037M15Rik|H-2Q6|Qa-6|Qa6	histocompatibility 2, Q region locus 6	protein-coding	0.095000	0.656716	
mm_76790.1	chr8	102739169	102739369	-	1	NA	NA	NA	45842	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.010000	0.537313	
mm_58406.1	chr7	3220715	3220915	+	1	NA	NA	NA	42	NR_029645	100049713		NR_029645	ENSMUSG00000077886	Mir295	Mirn295|mir-295|mmu-miR-295	microRNA 295	ncRNA	0.010000	0.472637	
mm_104506.1	chr11	95969875	95970075	-	1	NA	NA	NA	-6592	NR_037223	100526468		NR_037223	ENSMUSG00000093358	Mir3063	mmu-mir-3063	microRNA 3063	ncRNA	0.035000	0.577114	
mm_25522.1	chr3	114030773	114030973	+	1	NA	NA	NA	333	NM_007729	12814	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding	0.050000	0.527363	
mm_112283.1	chr12	114406929	114407129	-	1	NA	NA	NA	62437	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.000000	0.457711	
mm_99003.1	chr11	98798607	98798807	+	1	NA	NA	NA	2938	NM_028722	74026	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male-specific lethal 1 homolog (Drosophila)	protein-coding	0.025000	0.527363	-83(CACCTTAAAAGA,-,0.00)
mm_21616.1	chr2	164275914	164276114	-	1	NA	NA	NA	2293	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.000000	0.422886	
mm_109942.1	chr12	11326233	11326433	-	1	NA	NA	NA	26446	NR_106136	102465775		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.010000	0.427861	
mm_17055.1	chr2	21205217	21205417	-	1	NA	NA	NA	48	NM_027728	71233	Mm.27658	NM_027728	ENSMUSG00000026679	Enkur	4933434I06Rik|AU016229	enkurin, TRPC channel interacting protein	protein-coding	0.035000	0.407960	
mm_62370.1	chr7	100607852	100608052	+	1	NA	NA	NA	44	NR_003559	52443	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e	mitochondrial ribosomal protein L48	protein-coding	0.160000	0.756219	
mm_48569.1	chr5	143315179	143315379	-	1	NA	NA	NA	81	NM_172726	231868	Mm.440105	NM_172726	ENSMUSG00000039244	E130309D02Rik	A630028N22	RIKEN cDNA E130309D02 gene	protein-coding	0.170000	0.791045	
mm_49225.1	chr6	15794206	15794406	+	1	NA	NA	NA	73645	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.000000	0.303483	-54(ACCCATAAAAAC,-,0.00)
mm_159263.1	chr2	155961917	155962117	+	1	NA	NA	NA	5459	NM_177217	16328	Mm.288729	NM_008383	ENSMUSG00000038241	Cep250	AW490617|B230210E21Rik|Cep2|Inmp	centrosomal protein 250	protein-coding	0.030000	0.616915	
mm_31223.1	chr4	44019778	44019978	+	1	NA	NA	NA	7228	NM_001290470	12757	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.025000	0.457711	
mm_47556.1	chr5	124392525	124392725	-	1	NA	NA	NA	33289	NM_001081203	243272	Mm.23879	NM_001081203	ENSMUSG00000038095	Sbno1	9330180L10Rik|AI849128|AW557836|BC021875|Sbno|mSno1|sno	strawberry notch homolog 1 (Drosophila)	protein-coding	0.015000	0.447761	
mm_158494.1	chrX	142346861	142347061	-	1	NA	NA	NA	-40763	NM_021487	66240	Mm.58507	NM_021487	ENSMUSG00000090122	Kcne1l	1500015C14Rik|Kcne5|Mink	potassium voltage-gated channel, Isk-related family, member 1-like, pseudogene	protein-coding	0.005000	0.323383	
mm_112340.1	chr12	116262896	116263096	-	1	NA	NA	NA	29	NM_146039	217935	Mm.31382	NM_146039	ENSMUSG00000042050	Wdr60	D430033N04Rik	WD repeat domain 60	protein-coding	0.115000	0.726368	
mm_147154.1	chr18	36679169	36679369	-	1	NA	NA	NA	54	NM_026404	67843	Mm.273350	NM_026404	ENSMUSG00000033272	Slc35a4	2610030J16Rik	solute carrier family 35, member A4	protein-coding	0.100000	0.621891	
mm_26345.1	chr3	142547302	142547502	+	1	NA	NA	NA	-12650	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.010000	0.522388	
mm_2312.1	chr1	91720796	91720996	+	1	NA	NA	NA	-80565	NM_007855	13345	Mm.9474	NM_007855	ENSMUSG00000007805	Twist2	Dermo1|bHLHa39	twist basic helix-loop-helix transcription factor 2	protein-coding	0.010000	0.537313	
mm_53967.1	chr6	5977302	5977502	-	1	NA	NA	NA	-9	NR_040255	72249	Mm.443268	NR_040255	ENSMUSG00000085416	1700019G24Rik	-	RIKEN cDNA 1700019G24 gene	ncRNA	0.035000	0.557214	
mm_11052.1	chr2	27182043	27182243	+	1	NA	NA	NA	16636	NM_138942	13166	Mm.167781	NM_138942	ENSMUSG00000000889	Dbh	-	dopamine beta hydroxylase	protein-coding	0.010000	0.582090	
mm_42970.1	chr5	123141132	123141332	+	1	NA	NA	NA	-961	NM_001040398	208043	Mm.250391	NM_177581	ENSMUSG00000038384	Setd1b	AA516740|BC035291|KMT2G|mKIAA1076	SET domain containing 1B	protein-coding	0.095000	0.631841	
mm_76834.1	chr8	105264482	105264682	-	1	NA	NA	NA	12	NM_001033161	71609	Mm.264255	NM_001033161	ENSMUSG00000031887	Tradd	9130005N23Rik|AA930854	TNFRSF1A-associated via death domain	protein-coding	0.125000	0.741294	
mm_28380.1	chr3	89998147	89998347	-	1	NA	NA	NA	-144	NM_001310681	23897	Mm.256035	NM_011826	ENSMUSG00000027944	Hax1	HAX-1|HSP1BP-1|Hs1bp1|SIG-111|Silg111|mHAX-1s	HCLS1 associated X-1	protein-coding	0.025000	0.522388	
mm_100611.1	chr11	121451862	121452062	+	1	NA	NA	NA	13	NM_029878	108903	Mm.23686	NM_029878	ENSMUSG00000039230	Tbcd	2310057L06Rik|A030005L14Rik|mKIAA0988	tubulin-specific chaperone d	protein-coding	0.075000	0.582090	
mm_9338.1	chr1	172004447	172004647	-	1	NA	NA	NA	22748	NM_033509	93840	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	vang-like 2 (van gogh, Drosophila)	protein-coding	0.030000	0.482587	
mm_157242.1	chrX	17572189	17572389	-	1	NA	NA	NA	36	NM_001313745	72018	Mm.41558	NM_028058	ENSMUSG00000025040	Fundc1	1500005J14Rik|1810033P05Rik	FUN14 domain containing 1	protein-coding	0.060000	0.606965	48(TCCTTTAAAGTG,+,0.00),49(CCTTTAAAGTGG,+,0.00)
mm_101637.1	chr11	36432789	36432989	-	1	NA	NA	NA	-452800	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.030000	0.467662	
mm_133136.1	chr16	66657025	66657225	+	1	NA	NA	NA	7	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0.045000	0.388060	
mm_16386.1	chr2	178455339	178455539	+	1	NA	NA	NA	24924	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.015000	0.532338	
mm_145295.1	chr18	53268457	53268657	+	1	NA	NA	NA	22895	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.020000	0.512438	
mm_136735.1	chr17	8340259	8340459	+	1	NA	NA	NA	-47	NR_028280	320111	Mm.442510	NM_178774	ENSMUSG00000055945	Prr18	9630019K15Rik	proline rich 18	protein-coding	0.030000	0.532338	-31(GCGCCTAAAAGC,-,0.00)
mm_141015.1	chr17	25015710	25015910	-	1	NA	NA	NA	-276	NM_134126	106633	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	0.125000	0.696517	
mm_122825.1	chr14	54686084	54686284	-	1	NA	NA	NA	13	NM_021437	58248	Mm.197509	NM_021437	ENSMUSG00000040822	1700123O20Rik	MNCb-2990	RIKEN cDNA 1700123O20 gene	protein-coding	0.070000	0.611940	66(GGCCTTAAGGGG,-,0.00)
mm_34936.1	chr4	155841030	155841230	+	1	NA	NA	NA	1450	NM_024263	74761	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	0.130000	0.646766	
mm_166119.1	chr4	151057520	151057720	+	1	NA	NA	NA	333	NM_009498	22319	Mm.273930	NM_009498	ENSMUSG00000028955	Vamp3	D130027G05Rik|VAMP-3|ceb	vesicle-associated membrane protein 3	protein-coding	0.165000	0.771144	
mm_51783.1	chr6	88199564	88199764	+	1	NA	NA	NA	1000	NM_008090	14461	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.105000	0.661692	
mm_89298.1	chr10	87913597	87913797	+	1	NA	NA	NA	52586	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.025000	0.567164	
mm_122677.1	chr14	52009527	52009727	-	1	NA	NA	NA	4931	NM_001253695	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.055000	0.611940	
mm_18547.1	chr2	64975679	64975879	-	1	NA	NA	NA	46987	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0.015000	0.497512	
mm_27159.1	chr3	33142893	33143093	-	1	NA	NA	NA	198	NM_001163516	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.170000	0.791045	
mm_118623.1	chr14	21111152	21111352	+	1	NA	NA	NA	35100	NM_001243041	11534	Mm.188734	NM_134079	ENSMUSG00000039197	Adk	2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak	adenosine kinase	protein-coding	0.005000	0.353234	-69(AGCTTTTAAAAG,-,0.00),-68(GCTTTTAAAAGA,+,0.00),-68(GCTTTTAAAAGA,-,0.00),-67(CTTTTAAAAGAC,+,0.00)
mm_168219.1	chr10	77166433	77166633	-	1	NA	NA	NA	-3	NM_009929	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.075000	0.726368	
mm_91596.1	chr10	40502783	40502983	-	1	NA	NA	NA	-67479	NM_027572	70840	Mm.332570	NM_027572	ENSMUSG00000019834	Slc22a16	4921504E14Rik|CT2|FLIPT2|OCT6|OKB1	solute carrier family 22 (organic cation transporter), member 16	protein-coding	0.005000	0.462687	
mm_107845.1	chr12	69364249	69364449	+	1	NA	NA	NA	-7173	NM_025441	66244	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0.075000	0.626866	
mm_142754.1	chr17	48682870	48683070	-	1	NA	NA	NA	228069	NM_152823	76589	Mm.311629	NM_152823	ENSMUSG00000043592	Unc5cl	2510009H09Rik|BB155270|Zud	unc-5 family C-terminal like	protein-coding	0.000000	0.487562	
mm_66829.1	chr7	48843569	48843769	-	1	NA	NA	NA	2	NM_013808	13009	Mm.17235	NM_013808	ENSMUSG00000030470	Csrp3	CRP3|MLP|MMLP	cysteine and glycine-rich protein 3	protein-coding	0.020000	0.492537	
mm_164766.1	chr17	86223483	86223683	+	1	NA	NA	NA	55798	NM_011104	18754	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0.010000	0.353234	
mm_3186.1	chr1	135783038	135783238	+	1	NA	NA	NA	-16283	NM_021467	21952	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	0.020000	0.537313	
mm_138036.1	chr17	33919631	33919831	+	1	NA	NA	NA	253	NM_009318	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.050000	0.572139	
mm_149572.1	chr19	12805264	12805464	+	1	NA	NA	NA	6755	NM_134152	107321	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	0.000000	0.268657	
mm_95677.1	chr11	54101486	54101686	+	1	NA	NA	NA	662	NM_011031	18452	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.015000	0.497512	
mm_110794.1	chr12	72085306	72085506	-	1	NA	NA	NA	-93	NM_026038	67217	Mm.286120	NM_026038	ENSMUSG00000019718	L3hypdh	2810055F11Rik	L-3-hydroxyproline dehydratase (trans-)	protein-coding	0.065000	0.646766	
mm_170912.1	chr2	34964815	34965015	-	1	NA	NA	NA	-3143	NM_001326601	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.025000	0.532338	
mm_33955.1	chr4	137454667	137454867	+	1	NA	NA	NA	1471	NM_027063	69380	Mm.272519	NM_027063	ENSMUSG00000041399	1700013G24Rik	AI507018	RIKEN cDNA 1700013G24 gene	protein-coding	0.045000	0.592040	
mm_169522.1	chr1	48928152	48928352	-	1	NA	NA	NA	-1461127	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA	0.035000	0.432836	
mm_86149.1	chr9	117252264	117252464	-	1	NA	NA	NA	119	NM_001172123	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.040000	0.363184	
mm_105548.1	chr11	106365448	106365648	-	1	NA	NA	NA	-9278	NM_029345	75573	Mm.159539	NM_029345	ENSMUSG00000009210	Prr29	2310007L24Rik	proline rich 29	protein-coding	0.035000	0.631841	
mm_43285.1	chr5	134099594	134099794	+	1	NA	NA	NA	-54	NM_030719	80909	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding	0.120000	0.676617	
mm_43509.1	chr5	137025227	137025427	+	1	NA	NA	NA	-4968	NM_001039385	381677	Mm.389697	NM_001039385	ENSMUSG00000037428	Vgf	Gm1052	VGF nerve growth factor inducible	protein-coding	0.085000	0.626866	
mm_96134.1	chr11	60878872	60879072	+	1	NA	NA	NA	66	NM_173453	216821	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	0.085000	0.616915	
mm_93888.1	chr10	125328436	125328636	-	1	NA	NA	NA	-1	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.025000	0.482587	
mm_11017.1	chr2	26603967	26604167	+	1	NA	NA	NA	350	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.110000	0.666667	
mm_131331.1	chr16	13256406	13256606	+	1	NA	NA	NA	25	NM_001122667	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.130000	0.741294	
mm_21945.1	chr2	167060973	167061173	-	1	NA	NA	NA	-1861	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.000000	0.353234	
mm_19433.1	chr2	91950296	91950496	-	1	NA	NA	NA	-48	NM_001166597	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.030000	0.621891	
mm_102804.1	chr11	68863885	68864085	-	1	NA	NA	NA	-10854	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.000000	0.497512	
mm_138991.1	chr17	45523416	45523616	+	1	NA	NA	NA	82	NM_013688	21645	Mm.491193	NM_013688	ENSMUSG00000023949	Tcte1	D17Sil1|Tcte-1	t-complex-associated testis expressed 1	protein-coding	0.060000	0.666667	
mm_150086.1	chr19	29410830	29411030	+	1	NA	NA	NA	11	NM_021396	58205	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.015000	0.437811	
mm_166078.1	chr4	137388599	137388799	+	1	NA	NA	NA	21092	NM_001126318	242711	Mm.475541	NM_001126318	ENSMUSG00000078520	Cela3a	Gm13011|OTTMUSG00000009877	chymotrypsin-like elastase family, member 3A	protein-coding	0.030000	0.547264	
mm_75110.1	chr8	34154344	34154544	-	1	NA	NA	NA	-119	NM_026432	67887	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	0.075000	0.577114	
mm_135224.1	chr16	36784705	36784905	-	1	NA	NA	NA	157	NM_001145899	57738	Mm.281804	NM_021301	ENSMUSG00000022899	Slc15a2	8430408C16Rik|C78862|Pept2	solute carrier family 15 (H+/peptide transporter), member 2	protein-coding	0.005000	0.497512	
mm_2855.1	chr1	131674944	131675144	+	1	NA	NA	NA	-13651	NM_145509	226421	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0.010000	0.457711	
mm_16481.1	chr2	180890593	180890793	+	1	NA	NA	NA	-3347	NR_029538	723951		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA	0.050000	0.597015	
mm_11347.1	chr2	30845217	30845417	+	1	NA	NA	NA	-50	NM_009116	20204	Mm.1802	NM_009116	ENSMUSG00000039476	Prrx2	Prx2|S8	paired related homeobox 2	protein-coding	0.130000	0.771144	
mm_16905.1	chr2	13491794	13491994	-	1	NA	NA	NA	-18	NM_001081084	65969	Mm.313915	NM_001081084	ENSMUSG00000026726	Cubn	AA408369|AL022750|D2Wsu88e	cubilin (intrinsic factor-cobalamin receptor)	protein-coding	0.020000	0.492537	
mm_98943.1	chr11	98400450	98400650	+	1	NA	NA	NA	-60	NM_001033537	320655	Mm.86519	NM_001033537	ENSMUSG00000038208	Pgap3	CAB2|D430035D22Rik|Perld1	post-GPI attachment to proteins 3	protein-coding	0.050000	0.492537	
mm_75768.1	chr8	69974287	69974487	-	1	NA	NA	NA	-4	NM_001113346	234366	Mm.270044	NM_145596	ENSMUSG00000036180	Gatad2a	1110066C11Rik|BC031407|C80248	GATA zinc finger domain containing 2A	protein-coding	0.110000	0.746269	28(GCCTTTAAGAGC,-,0.00),29(CCTTTAAGAGCT,+,0.00)
mm_70222.1	chr7	145137127	145137327	-	1	NA	NA	NA	70892	NR_033626	100040049	Mm.102235	NR_033626	ENSMUSG00000109305	1810010D01Rik	Gm2572	RIKEN cDNA 1810010D01 gene	ncRNA	0.020000	0.547264	
mm_26109.1	chr3	137623622	137623822	+	1	NA	NA	NA	50	NM_030143	73284	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	0.090000	0.731343	
mm_154762.1	chrX	12079116	12079316	+	1	NA	NA	NA	1337	NM_175045	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.120000	0.686567	
mm_133033.1	chr16	57352892	57353092	+	1	NA	NA	NA	-285	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.020000	0.517413	
mm_140625.1	chr17	12318609	12318809	-	1	NA	NA	NA	-49	NM_011948	26407	Mm.28587	NM_011948	ENSMUSG00000014426	Map3k4	D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213	mitogen-activated protein kinase kinase kinase 4	protein-coding	0.140000	0.721393	
mm_35394.1	chr4	34049983	34050183	-	1	NA	NA	NA	-16	NM_026293	67652	Mm.55848	NM_026293	ENSMUSG00000028264	Spaca1	1700124L11Rik|4930540L03Rik	sperm acrosome associated 1	protein-coding	0.090000	0.666667	
mm_137577.1	chr17	27909201	27909401	+	1	NA	NA	NA	-5	NM_001286040	224650	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.135000	0.766169	
mm_52471.1	chr6	114248068	114248268	+	1	NA	NA	NA	-34467	NM_178703	232333	Mm.5260	NM_178703	ENSMUSG00000030310	Slc6a1	A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1	solute carrier family 6 (neurotransmitter transporter, GABA), member 1	protein-coding	0.010000	0.457711	
mm_96500.1	chr11	68431837	68432037	+	1	NA	NA	NA	-188	NM_177320	320207	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik	phosphoinositide-3-kinase, regulatory subunit 5, p101	protein-coding	0.045000	0.577114	
mm_21419.1	chr2	158129321	158129521	-	1	NA	NA	NA	16971	NM_009373	21817	Mm.330731	NM_009373	ENSMUSG00000037820	Tgm2	G[a]h|TG2|TGase2|tTG|tTGas	transglutaminase 2, C polypeptide	protein-coding	0.040000	0.577114	
mm_130045.1	chr15	89128564	89128764	-	1	NA	NA	NA	36	NR_028448	170787	Mm.203954	NM_199198	ENSMUSG00000062906	Hdac10	AW548891|Hd10	histone deacetylase 10	protein-coding	0.060000	0.597015	
mm_75663.1	chr8	66486417	66486617	-	1	NA	NA	NA	-10	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.080000	0.592040	
mm_58884.1	chr7	17087891	17088091	+	1	NA	NA	NA	13951	NM_007676	26436	Mm.143686	NM_007676	ENSMUSG00000066760	Psg16	Cea11|PSG|bCEA	pregnancy specific glycoprotein 16	protein-coding	0.010000	0.522388	
mm_86538.1	chr10	8214169	8214369	+	1	NA	NA	NA	-258146	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.045000	0.557214	
mm_172941.1	chr9	79902477	79902677	+	1	NA	NA	NA	75305	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.055000	0.621891	
mm_91232.1	chr10	22302421	22302621	-	1	NA	NA	NA	-4199	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.010000	0.467662	
mm_144964.1	chr18	37823976	37824176	+	1	NA	NA	NA	4530	NM_033583	93708	Mm.247203	NM_033583	ENSMUSG00000102543	Pcdhgc5	-	protocadherin gamma subfamily C, 5	protein-coding	0.020000	0.527363	
mm_153009.1	chr19	30363217	30363417	-	1	NA	NA	NA	130360	NM_010776	17195	Mm.30045	NM_010776	ENSMUSG00000024863	Mbl2	L-MBP|MBL|MBL-C|MBP-C	mannose-binding lectin (protein C) 2	protein-coding	0.010000	0.388060	85(GAATTTAAAAAG,-,0.00)
mm_157717.1	chrX	70143483	70143683	-	1	NA	NA	NA	5	NR_033213	74305	Mm.410860	NR_033213	ENSMUSG00000100511	1700111N16Rik	-	RIKEN cDNA 1700111N16 gene	ncRNA	0.005000	0.398010	
mm_4556.1	chr1	177444595	177444795	+	1	NA	NA	NA	34	NM_001012330	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238	zinc finger and BTB domain containing 18	protein-coding	0.015000	0.497512	
mm_55234.1	chr6	52240767	52240967	-	1	NA	NA	NA	-13	NM_001122950	15395	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0.045000	0.577114	68(CCCTATAAAAGC,+,0.00),68(CCCTATAAAAGC,-,0.00)
mm_38740.1	chr4	145246767	145246967	-	1	NA	NA	NA	3	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.070000	0.691542	
mm_173045.1	chrX	118200104	118200304	+	1	NA	NA	NA	-227023	NM_001142750	100039551	Mm.272850	NM_001142750	ENSMUSG00000100194	Tgif2lx2	-	TGFB-induced factor homeobox 2-like, X-linked 2	protein-coding	0.055000	0.646766	
mm_87838.1	chr10	60390692	60390892	+	1	NA	NA	NA	-8934	NM_001164374	100302688	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.015000	0.502488	
mm_103167.1	chr11	70458730	70458930	-	1	NA	NA	NA	-792	NM_001029929	574428	Mm.472771	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.015000	0.517413	
mm_157949.1	chrX	86997574	86997774	-	1	NA	NA	NA	-642680	NR_036689	245502	Mm.490821	NR_036689		Gm41	-	melanoma antigen, family B, 4 pseudogene	pseudo	0.000000	0.328358	
mm_108659.1	chr12	86421570	86421770	+	1	NA	NA	NA	26	NM_011934	26380	Mm.235550	NM_011934	ENSMUSG00000021255	Esrrb	Err2|Errb|Estrrb|Nr3b2	estrogen related receptor, beta	protein-coding	0.080000	0.646766	
mm_102750.1	chr11	67256205	67256405	-	1	NA	NA	NA	18493	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.030000	0.482587	
mm_13390.1	chr2	103969537	103969737	+	1	NA	NA	NA	80	NM_001142336	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.080000	0.601990	
mm_93964.1	chr10	127288667	127288867	-	1	NA	NA	NA	251	NM_001347171	110962	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.125000	0.791045	
mm_103360.1	chr11	74907963	74908163	-	1	NA	NA	NA	2617	NR_028562	100217469		NR_028562		Snord91a	MBII-296	small nucleolar RNA, C/D box 91A	snoRNA	0.020000	0.522388	
mm_74882.1	chr8	25091268	25091468	-	1	NA	NA	NA	10443	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.025000	0.552239	
mm_85014.1	chr9	87731161	87731361	-	1	NA	NA	NA	-1	NM_023814	76365	Mm.158789	NM_023814	ENSMUSG00000032419	Tbx18	2810012F10Rik|2810404D13Rik	T-box18	protein-coding	0.035000	0.467662	
mm_125673.1	chr15	66541498	66541698	+	1	NA	NA	NA	19448	NM_172514	213068	Mm.132299	NM_172514	ENSMUSG00000036944	Tmem71	AI661017|E430024D12	transmembrane protein 71	protein-coding	0.010000	0.442786	-43(AGATTTAAAAGG,-,0.00)
mm_107198.1	chr12	25318057	25318257	+	1	NA	NA	NA	188983	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.000000	0.447761	
mm_54213.1	chr6	25689745	25689945	-	1	NA	NA	NA	135	NM_010338	14763	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	0.060000	0.621891	
mm_81519.1	chr9	110051964	110052164	+	1	NA	NA	NA	43	NM_001311164	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.050000	0.597015	69(CTCTCTAAAGGC,-,0.00)
mm_119540.1	chr14	48120719	48120919	+	1	NA	NA	NA	-50	NM_033602	93834	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	0.155000	0.781095	-100(CCCCTTTAAGGG,-,0.00),-99(CCCTTTAAGGGC,+,0.00),-98(CCTTTAAGGGCT,+,0.00)
mm_25685.1	chr3	122245471	122245671	+	1	NA	NA	NA	14	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.150000	0.751244	
mm_96783.1	chr11	69941156	69941356	+	1	NA	NA	NA	4928	NM_001347634	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.010000	0.512438	
mm_116277.1	chr13	34916908	34917108	-	1	NA	NA	NA	2984	NM_027967	71864	Mm.380836	NM_027967	ENSMUSG00000021414	Fam217a	1700026J04Rik	family with sequence similarity 217, member A	protein-coding	0.080000	0.676617	
mm_12199.1	chr2	65845692	65845892	+	1	NA	NA	NA	25	NM_178634	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding	0.025000	0.547264	-85(TCCTCTAAAAGC,-,0.00)
mm_128586.1	chr15	58076346	58076546	-	1	NA	NA	NA	62	NM_001042438	22770	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	0.095000	0.731343	
mm_5999.1	chr1	58962412	58962612	-	1	NA	NA	NA	10970	NM_172406	70827	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	0.015000	0.383085	-33(AGCTAGAAAAGG,-,0.00)
mm_33903.1	chr4	136285988	136286188	+	1	NA	NA	NA	19	NM_009557	22704	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	0.035000	0.582090	
mm_166635.1	chr6	82780421	82780621	-	1	NA	NA	NA	-6067	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.015000	0.547264	
mm_115022.1	chr13	98816630	98816830	+	1	NA	NA	NA	-1281	NM_172591	218503	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.035000	0.497512	
mm_115478.1	chr13	3139600	3139800	-	1	NA	NA	NA	-9775	NR_001581	73266	Mm.335891	NR_001581		Speer6-ps1	1700039A02Rik|SPEER-6	spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1	pseudo	0.045000	0.567164	
mm_87356.1	chr10	43656373	43656573	+	1	NA	NA	NA	63046	NR_033558	414125	Mm.244305	NR_033558	ENSMUSG00000075184	F830002L21Rik	F930017D23Rik	RIKEN cDNA F830002L21 gene	ncRNA	0.000000	0.517413	
mm_82117.1	chr9	123461983	123462183	+	1	NA	NA	NA	-16618	NM_013860	29806	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.055000	0.477612	
mm_96138.1	chr11	60931984	60932184	+	1	NA	NA	NA	27	NM_008928	26397	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0.135000	0.726368	
mm_114778.1	chr13	88821798	88821998	+	1	NA	NA	NA	426	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.060000	0.592040	
mm_98325.1	chr11	90259319	90259519	+	1	NA	NA	NA	9943	NM_026178	67468	Mm.277518	NM_026178	ENSMUSG00000003948	Mmd	1200017E07Rik|1810073C06Rik|AA690185	monocyte to macrophage differentiation-associated	protein-coding	0.010000	0.432836	
mm_144556.1	chr18	31634282	31634482	+	1	NA	NA	NA	-1	NM_172965	269003	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0.090000	0.656716	
mm_122164.1	chr14	31401959	31402159	-	1	NA	NA	NA	15618	NM_001347585	24056	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.010000	0.487562	16(ATCTCTAAAAGG,-,0.00)
mm_46928.1	chr5	114690887	114691087	-	1	NA	NA	NA	-52	NM_019821	56356	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0.170000	0.805970	
mm_101926.1	chr11	50202409	50202609	-	1	NA	NA	NA	8311	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.015000	0.522388	
mm_156569.1	chrX	151909759	151909959	+	1	NA	NA	NA	-2487	NR_029732	387253		NR_029732	ENSMUSG00000065602	Mirlet7f-2	Mirlet7f2|Mirnlet7f2|let-7f-2	microRNA let7f-2	ncRNA	0.005000	0.412935	-42(CTTCATAAAGCC,+,0.00)
mm_123026.1	chr14	55116862	55117062	-	1	NA	NA	NA	-27	NM_177049	319984	Mm.19047	NM_177049	ENSMUSG00000022208	Jph4	9330157P13Rik|JP-4|JPHL1	junctophilin 4	protein-coding	0.035000	0.562189	-72(CCTCATAAACAC,+,0.00)
mm_56099.1	chr6	87459122	87459322	-	1	NA	NA	NA	30228	NM_009756	12154	Mm.483321	NM_009756	ENSMUSG00000030046	Bmp10	-	bone morphogenetic protein 10	protein-coding	0.010000	0.467662	
mm_135210.1	chr16	36618470	36618670	-	1	NA	NA	NA	47507	NM_019388	12524	Mm.1452	NM_019388	ENSMUSG00000022901	Cd86	B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2	CD86 antigen	protein-coding	0.010000	0.373134	
mm_141253.1	chr17	27580324	27580524	-	1	NA	NA	NA	-14697	NM_001002895	106672	Mm.61488	NM_001002895	ENSMUSG00000062753	AI413582	AI854251	expressed sequence AI413582	protein-coding	0.030000	0.482587	
mm_81978.1	chr9	121314160	121314360	+	1	NA	NA	NA	-37088	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.045000	0.587065	
mm_164353.1	chr16	20590002	20590202	+	1	NA	NA	NA	520	NM_001144953	328643	Mm.40539	NM_182636	ENSMUSG00000046613	Vwa5b2	BB182430|EG328644|Gm1738|Gm931	von Willebrand factor A domain containing 5B2	protein-coding	0.100000	0.716418	
mm_148981.1	chr19	7612402	7612602	+	1	NA	NA	NA	-67	NM_025731	66727	Mm.116803	NM_025731	ENSMUSG00000024973	Hrasls5	1700055A14Rik|1700086E08Rik|4921526K24Rik|HRSL5|iNAT	HRAS-like suppressor family, member 5	protein-coding	0.130000	0.716418	
mm_167760.1	chr9	110422594	110422794	-	1	NA	NA	NA	2886	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.005000	0.502488	
mm_75167.1	chr8	36613843	36614043	-	1	NA	NA	NA	0	NM_015802	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.095000	0.716418	
mm_171578.1	chr4	147449080	147449280	+	1	NA	NA	NA	-104097	NM_001014397	433804	Mm.332047	NM_001014397	ENSMUSG00000065999	Zfp985	Gm13154|OTTMUSG00000010673	zinc finger protein 985	protein-coding	0.030000	0.492537	
mm_92929.1	chr10	84526739	84526939	-	1	NA	NA	NA	7049	NM_175451	216197	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.015000	0.517413	
mm_33682.1	chr4	133369632	133369832	+	1	NA	NA	NA	-40	NM_016981	20544	Mm.4312	NM_016981	ENSMUSG00000028854	Slc9a1	AW554487|Apnh|Mir5122|Nhe1|mir-5122|swe	solute carrier family 9 (sodium/hydrogen exchanger), member 1	protein-coding	0.080000	0.641791	7(GCCTATAAATGG,-,0.00)
mm_30916.1	chr4	32623887	32624087	+	1	NA	NA	NA	8517	NM_011997	26885	Mm.22279	NM_011997	ENSMUSG00000028282	Casp8ap2	D4Ertd659e|FLASH	caspase 8 associated protein 2	protein-coding	0.035000	0.437811	
mm_160897.1	chr11	73370906	73371106	+	1	NA	NA	NA	-240	NM_001172686	258924	Mm.236410	NM_146922	ENSMUSG00000063881	Olfr376	MOR135-12	olfactory receptor 376	protein-coding	0.010000	0.427861	
mm_132530.1	chr16	37835354	37835554	+	1	NA	NA	NA	-32946	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.015000	0.412935	
mm_98966.1	chr11	98682466	98682666	+	1	NA	NA	NA	12	NM_009439	22123	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0.080000	0.631841	
mm_82281.1	chr9	7556174	7556374	-	1	NA	NA	NA	-2155	NM_008611	17394	Mm.16415	NM_008611	ENSMUSG00000005800	Mmp8	BB138268	matrix metallopeptidase 8	protein-coding	0.015000	0.273632	
mm_119758.1	chr14	54168501	54168701	+	1	NA	NA	NA	85328	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.512438	
mm_143487.1	chr17	71310808	71311008	-	1	NA	NA	NA	57	NM_145158	246707	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.125000	0.761194	
mm_70341.1	chr8	4613065	4613265	+	1	NA	NA	NA	-5	NM_145591	233987	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.045000	0.567164	
mm_53628.1	chr6	140514833	140515033	+	1	NA	NA	NA	90834	NM_144920	109135	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.020000	0.532338	
mm_145528.1	chr18	60747009	60747209	+	1	NA	NA	NA	-27487	NM_020600	20044	Mm.43778	NM_020600	ENSMUSG00000024608	Rps14	2600014J02Rik|AL023078	ribosomal protein S14	protein-coding	0.015000	0.577114	
mm_156773.1	chrX	160794655	160794855	+	1	NA	NA	NA	26742	NM_011302	20147	Mm.41982	NM_011302	ENSMUSG00000031293	Rs1	Rs1h|Xlrs1|tmgc1	retinoschisis (X-linked, juvenile) 1 (human)	protein-coding	0.000000	0.432836	4(TCTTATAAGCAC,+,0.00)
mm_94211.1	chr11	3123949	3124149	+	1	NA	NA	NA	28	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.070000	0.651741	
mm_61951.1	chr7	90207544	90207744	+	1	NA	NA	NA	57788	NM_029256	75338	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.015000	0.422886	
mm_144617.1	chr18	32837189	32837389	+	1	NA	NA	NA	-2	NR_045381	75795	Mm.382634	NR_045381	ENSMUSG00000097553	4930455D15Rik	-	RIKEN cDNA 4930455D15 gene	ncRNA	0.110000	0.661692	
mm_10970.1	chr2	25706710	25706910	+	1	NA	NA	NA	-69	NM_023326	107771	Mm.330057	NM_023326	ENSMUSG00000049086	Bmyc	2900002K07Rik|AW060705|Mycb	brain expressed myelocytomatosis oncogene	protein-coding	0.095000	0.671642	
mm_11441.1	chr2	32034343	32034543	+	1	NA	NA	NA	-16503	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	0.015000	0.577114	
mm_130536.1	chr15	98937239	98937439	-	1	NA	NA	NA	-2949	NM_011654	22143	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.015000	0.507463	
mm_118139.1	chr13	104975881	104976081	-	1	NA	NA	NA	78949	NM_029879	52882	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.010000	0.432836	
mm_36856.1	chr4	106855736	106855936	-	1	NA	NA	NA	-50829	NM_001347159	329910	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0.035000	0.631841	
mm_71638.1	chr8	57490245	57490445	+	1	NA	NA	NA	2382	NR_126555	78353	Mm.426240	NR_126553	ENSMUSG00000096917	2500002B13Rik	-	RIKEN cDNA 2500002B13 gene	ncRNA	0.000000	0.502488	-36(GCTTAAAGACCC,+,0.00)
mm_94722.1	chr11	20632003	20632203	+	1	NA	NA	NA	126	NM_001038625	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.130000	0.716418	
mm_2192.1	chr1	89103676	89103876	+	1	NA	NA	NA	33314	NM_133816	98402	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.010000	0.522388	-6(GCTTTTAGATAG,+,0.00)
mm_32862.1	chr4	118411647	118411847	+	1	NA	NA	NA	2410	NM_020000	80509	Mm.259567	NM_020000	ENSMUSG00000006392	Med8	2210021A15Rik|AB041805|ARC32	mediator complex subunit 8	protein-coding	0.020000	0.522388	
mm_50490.1	chr6	48988719	48988919	+	1	NA	NA	NA	1958	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.020000	0.512438	
mm_3508.1	chr1	150107156	150107356	+	1	NA	NA	NA	7225	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.000000	0.293532	
mm_7479.1	chr1	120504846	120505046	-	1	NA	NA	NA	138	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.010000	0.457711	
mm_97341.1	chr11	77456338	77456538	+	1	NA	NA	NA	-7475	NM_139129	216961	Mm.33477	NM_139128	ENSMUSG00000020836	Coro6	-	coronin 6	protein-coding	0.005000	0.427861	
mm_53420.1	chr6	134035564	134035764	+	1	NA	NA	NA	-36	NM_001303102	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.040000	0.512438	-52(TCCTTTAAGAGG,-,0.00),-51(CCTTTAAGAGGC,+,0.00)
mm_11227.1	chr2	29788228	29788428	+	1	NA	NA	NA	65	NM_178693	227683	Mm.245948	NM_178693	ENSMUSG00000026798	Coq4	A330041N06|D2Ertd97e	coenzyme Q4	protein-coding	0.100000	0.661692	
mm_39982.1	chr5	32459144	32459344	+	1	NA	NA	NA	274	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.130000	0.681592	
mm_154378.1	chrM	11112	11312	+	1	NA	NA	NA	NA	NA									0.025000	0.437811	11(CCACTTATAGCC,+,0.00)
mm_167463.1	chr8	124562729	124562929	-	1	NA	NA	NA	6878	NM_007428	11606	Mm.301626	NM_007428	ENSMUSG00000031980	Agt	AI265500|AngI|AngII|Aogen|Serpina8	angiotensinogen (serpin peptidase inhibitor, clade A, member 8)	protein-coding	0.015000	0.542289	
mm_87497.1	chr10	51526320	51526520	+	1	NA	NA	NA	35522	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.025000	0.532338	
mm_163917.1	chr14	37048926	37049126	-	1	NA	NA	NA	-12	NM_001301692	57811	Mm.20460	NM_021340	ENSMUSG00000021804	Rgr	-	retinal G protein coupled receptor	protein-coding	0.000000	0.422886	28(CCATTTAAAAGG,+,0.00),28(CCATTTAAAAGG,-,0.00)
mm_106521.1	chr11	120560257	120560457	-	1	NA	NA	NA	-9225	NM_026814	68701	Mm.46477	NM_026814	ENSMUSG00000025129	Ppp1r27	1110033I14Rik|Dysfip1|toonin	protein phosphatase 1, regulatory subunit 27	protein-coding	0.000000	0.452736	
mm_98828.1	chr11	97404314	97404514	+	1	NA	NA	NA	41863	NM_138657	192157	Mm.34339	NM_138657	ENSMUSG00000038485	Socs7	2310063P06Rik|C85125|Nap4	suppressor of cytokine signaling 7	protein-coding	0.130000	0.805970	
mm_10525.1	chr2	16396487	16396687	+	1	NA	NA	NA	40283	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.005000	0.447761	
mm_78069.1	chr9	15311065	15311265	+	1	NA	NA	NA	-1446	NR_106108	102465758		NR_106108	ENSMUSG00000105847	Gm25500	Mir7650|mmu-mir-7650	predicted gene, 25500	ncRNA	0.000000	0.288557	
mm_64101.1	chr7	141010455	141010655	+	1	NA	NA	NA	189	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.035000	0.552239	
mm_106918.1	chr12	8219930	8220130	+	1	NA	NA	NA	11903	NM_001167767	68832	Mm.25608	NM_172401	ENSMUSG00000037669	Ldah	1110057K04Rik|mLDAH	lipid droplet associated hydrolase	protein-coding	0.015000	0.507463	
mm_31906.1	chr4	84698047	84698247	+	1	NA	NA	NA	-23061	NM_172870	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.030000	0.502488	
mm_36909.1	chr4	108031850	108032050	-	1	NA	NA	NA	140	NM_001285958	242608	Mm.74710	NM_172874	ENSMUSG00000028600	Podn	9430070G18|Pcan|SLRR5A	podocan	protein-coding	0.150000	0.746269	
mm_35104.1	chr4	9526119	9526319	-	1	NA	NA	NA	117498	NM_001177853	65973	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.010000	0.402985	
mm_34414.1	chr4	145258347	145258547	+	1	NA	NA	NA	-11577	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.005000	0.472637	
mm_154431.1	chrM	584	784	-	1	NA	NA	NA	NA	NA									0.025000	0.402985	-2(CGGTATATAGGC,-,0.00)
mm_146935.1	chr18	32135853	32136053	-	1	NA	NA	NA	2252	NM_008934	19123	Mm.2786	NM_008934	ENSMUSG00000024386	Proc	PC	protein C	protein-coding	0.010000	0.552239	
mm_157840.1	chrX	74368408	74368608	-	1	NA	NA	NA	40	NR_045779	27643	Mm.3979	NM_145405	ENSMUSG00000015290	Ubl4a	DXHXS254E|DXS254E|DXS254Eh|Gdx|Ubl4	ubiquitin-like 4A	protein-coding	0.125000	0.701493	
mm_87921.1	chr10	62506479	62506679	+	1	NA	NA	NA	1176	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.025000	0.368159	
mm_72352.1	chr8	79663646	79663846	+	1	NA	NA	NA	24070	NM_001081164	73945	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.010000	0.422886	
mm_78820.1	chr9	44086113	44086313	+	1	NA	NA	NA	1293	NM_198091	53376	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.015000	0.567164	
mm_123748.1	chr14	70192628	70192828	-	1	NA	NA	NA	-482	NM_001271409	20410	Mm.5068	NM_011366	ENSMUSG00000022091	Sorbs3	SCAM-1|SH3P3|Sh3d4|vinexin-g	sorbin and SH3 domain containing 3	protein-coding	0.015000	0.562189	
mm_53368.1	chr6	129408765	129408965	+	1	NA	NA	NA	3	NM_172732	232414	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0.010000	0.427861	
mm_124610.1	chr15	3279348	3279548	+	1	NA	NA	NA	8471	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.020000	0.547264	
mm_100064.1	chr11	115381783	115381983	+	1	NA	NA	NA	-33	NM_001080929	237988	Mm.102872	NM_001080929	ENSMUSG00000050910	Cdr2l	D030068L24Rik|Gm21	cerebellar degeneration-related protein 2-like	protein-coding	0.115000	0.711443	
mm_81138.1	chr9	106656303	106656503	+	1	NA	NA	NA	-294	NM_001160353	108068	Mm.410822	NM_001160353	ENSMUSG00000023192	Grm2	4930441L02Rik|Gprc1b|mGluR2|mGluR7	glutamate receptor, metabotropic 2	protein-coding	0.030000	0.616915	
mm_83420.1	chr9	44945833	44946033	-	1	NA	NA	NA	19667	NM_001346698	140630	Mm.215069	NM_145400	ENSMUSG00000059890	Ube4a	4732444G18Rik|9930123J21Rik|UFD2b	ubiquitination factor E4A	protein-coding	0.005000	0.432836	-35(TCTTTTATAAAG,+,0.00)
mm_63638.1	chr7	128539940	128540140	+	1	NA	NA	NA	16457	NM_013863	29810	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0.035000	0.582090	
mm_90744.1	chr10	5368391	5368591	-	1	NA	NA	NA	119823	NM_001347711	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.020000	0.497512	-98(CACCTTTAAAAG,-,0.00),-97(ACCTTTAAAAGG,-,0.00),-96(CCTTTAAAAGGT,+,0.00),-95(CTTTAAAAGGTC,+,0.00)
mm_19778.1	chr2	106964204	106964404	-	1	NA	NA	NA	6087	NM_173750	212772	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	0.005000	0.378109	
mm_76300.1	chr8	84249536	84249736	-	1	NA	NA	NA	125	NM_001007571	101966	Mm.200723	NM_001007571	ENSMUSG00000019362	D8Ertd738e	AA589584	DNA segment, Chr 8, ERATO Doi 738, expressed	protein-coding	0.095000	0.666667	
mm_148404.1	chr19	3851844	3852044	+	1	NA	NA	NA	171	NR_073190	12660	Mm.225505	NM_013490	ENSMUSG00000024843	Chka	CK|CK/EK-alpha|Chetk-alpha|Chk|ChoK|EK|EtnK-alpha	choline kinase alpha	protein-coding	0.135000	0.736318	
mm_86083.1	chr9	114818938	114819138	-	1	NA	NA	NA	25114	NM_027294	70031	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	0.010000	0.512438	
mm_43443.1	chr5	136102251	136102451	+	1	NA	NA	NA	-3171	NR_106002	102465626		NR_106002	ENSMUSG00000099003	Mir7035	Gm27661|mmu-mir-7035	microRNA 7035	ncRNA	0.105000	0.651741	
mm_71102.1	chr8	35376588	35376788	+	1	NA	NA	NA	947	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.070000	0.666667	
mm_42284.1	chr5	114289173	114289373	+	1	NA	NA	NA	-15512	NM_148935	116810	Mm.17709	NM_148935	ENSMUSG00000042002	Foxn4	-	forkhead box N4	protein-coding	0.055000	0.577114	
mm_98455.1	chr11	94946687	94946887	+	1	NA	NA	NA	10563	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.030000	0.567164	
mm_166197.1	chr5	37276186	37276386	+	1	NA	NA	NA	30522	NM_007765	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.020000	0.477612	
mm_51001.1	chr6	63579738	63579938	+	1	NA	NA	NA	322981	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.000000	0.253731	
mm_93014.1	chr10	87492665	87492865	-	1	NA	NA	NA	895	NM_008553	17172	Mm.136217	NM_008553	ENSMUSG00000020052	Ascl1	AI225900|ASH1|Mash1|bHLHa46	achaete-scute family bHLH transcription factor 1	protein-coding	0.110000	0.671642	
mm_142593.1	chr17	46752061	46752261	-	1	NA	NA	NA	53	NM_001305989	72029	Mm.240325	NM_028065	ENSMUSG00000023973	Cnpy3	1600025D17Rik|2410050O22Rik|AI413153|CAG4A|ERDA5|PRAT4A|Tnrc5	canopy FGF signaling regulator 3	protein-coding	0.120000	0.716418	
mm_104241.1	chr11	88718159	88718359	-	1	NA	NA	NA	8	NM_001201341	76626	Mm.400451	NM_054043	ENSMUSG00000069769	Msi2	1700105C15Rik|AI451722|AI563628|AW489193|Msi2h	musashi RNA-binding protein 2	protein-coding	0.120000	0.796020	
mm_31816.1	chr4	66840967	66841167	+	1	NA	NA	NA	13516	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.015000	0.467662	
mm_64015.1	chr7	140218295	140218495	+	1	NA	NA	NA	128	NM_172909	244233	Mm.19283	NM_172909	ENSMUSG00000025461	Cd163l1	B430307C05|E430002D04Rik|Scart1	CD163 molecule-like 1	protein-coding	0.020000	0.547264	
mm_25212.1	chr3	103835974	103836174	+	1	NA	NA	NA	3378	NM_001142960	229672	Mm.297245	NM_001142959	ENSMUSG00000044165	Bcl2l15	Bfk|Gm566	BCLl2-like 15	protein-coding	0.020000	0.467662	
mm_78776.1	chr9	43744318	43744518	+	1	NA	NA	NA	-158	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	0.110000	0.726368	
mm_119254.1	chr14	33923706	33923906	+	1	NA	NA	NA	219	NM_145741	14560	Mm.432071	NM_145741	ENSMUSG00000021943	Gdf10	Bmp3b	growth differentiation factor 10	protein-coding	0.075000	0.656716	
mm_112422.1	chr13	4059572	4059772	+	1	NA	NA	NA	81	NM_134072	105387	Mm.26838	NM_134072	ENSMUSG00000033715	Akr1c14	9030611N15Rik|AW557061	aldo-keto reductase family 1, member C14	protein-coding	0.025000	0.462687	
mm_126757.1	chr15	85811229	85811429	+	1	NA	NA	NA	368	NM_001164626	72355	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	0.065000	0.592040	
mm_103993.1	chr11	84846392	84846592	-	1	NA	NA	NA	17314	NR_046281	74995	Mm.84413	NR_046281	ENSMUSG00000086799	4930502E09Rik	-	RIKEN cDNA 4930502E09 gene	ncRNA	0.005000	0.393035	
mm_51691.1	chr6	86526666	86526866	+	1	NA	NA	NA	-564	NR_037960	72012	Mm.349174	NR_037960	ENSMUSG00000097048	1600020E01Rik	-	RIKEN cDNA 1600020E01 gene	ncRNA	0.145000	0.761194	
mm_170332.1	chr18	44724575	44724775	-	1	NA	NA	NA	-62409	NM_001085374	328949	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0.015000	0.557214	
mm_89321.1	chr10	87931055	87931255	+	1	NA	NA	NA	-35516	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.422886	
mm_16028.1	chr2	167589454	167589654	+	1	NA	NA	NA	42451	NM_001311146	66589	Mm.278783	NM_023230	ENSMUSG00000078923	Ube2v1	0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1	ubiquitin-conjugating enzyme E2 variant 1	protein-coding	0.025000	0.601990	
mm_83334.1	chr9	44251378	44251578	-	1	NA	NA	NA	-14	NM_133226	170761	Mm.29872	NM_133226	ENSMUSG00000032105	Pdzd3	NaPi-Cap2|Pdzk2	PDZ domain containing 3	protein-coding	0.025000	0.547264	
mm_43236.1	chr5	129988930	129989130	+	1	NA	NA	NA	13798	NM_010368	110006	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.015000	0.422886	
mm_129600.1	chr15	79834229	79834429	-	1	NA	NA	NA	4	NM_001013360	504193	Mm.38438	NM_029079	ENSMUSG00000089837	Npcd	Cbx6-Nptxr	neuronal pentraxin chromo domain	protein-coding	0.145000	0.761194	
mm_95315.1	chr11	46404625	46404825	+	1	NA	NA	NA	-3	NM_001013783	432552	Mm.443244	NM_001013783	ENSMUSG00000020401	Fam71b	Gari-l3|OTTMUSG00000005491	family with sequence similarity 71, member B	protein-coding	0.015000	0.532338	
mm_65024.1	chr7	18403939	18404139	-	1	NA	NA	NA	28016	NM_054063	114871	Mm.362025	NM_054063	ENSMUSG00000030373	Psg28	cea16	pregnancy-specific glycoprotein 28	protein-coding	0.040000	0.487562	-34(GGGTATTTAAGC,-,0.00)
mm_51582.1	chr6	83794880	83795080	+	1	NA	NA	NA	-20	NM_001347315	56174	Mm.190650	NM_019542	ENSMUSG00000034744	Nagk	Gnk	N-acetylglucosamine kinase	protein-coding	0.075000	0.656716	
mm_162906.1	chr10	117287765	117287965	+	1	NA	NA	NA	5003	NM_013590	17110	Mm.177539	NM_013590	ENSMUSG00000069515	Lyz1	Lyz|Lyzf3|Lzp-s	lysozyme 1	protein-coding	0.005000	0.398010	
mm_150226.1	chr19	33968669	33968869	+	1	NA	NA	NA	7521	NM_026334	67717	Mm.329816	NM_026334	ENSMUSG00000024768	Lipf	2310051B21Rik|AV082900	lipase, gastric	protein-coding	0.000000	0.358209	-47(CCTTTTCTACCA,+,0.00),39(CCCTTTAAAAAG,+,0.00),39(CCCTTTAAAAAG,-,0.00),40(CCTTTAAAAAGA,+,0.00)
mm_165096.1	chr19	54728249	54728449	+	1	NA	NA	NA	371098	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.015000	0.407960	
mm_50220.1	chr6	42349732	42349932	+	1	NA	NA	NA	4	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.045000	0.691542	
mm_110322.1	chr12	34770540	34770740	-	1	NA	NA	NA	146455	NM_001271386	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.000000	0.447761	
mm_132996.1	chr16	55818065	55818265	+	1	NA	NA	NA	3973	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.030000	0.522388	
mm_163367.1	chr12	35772746	35772946	+	1	NA	NA	NA	-77728	NR_045050	71581	Mm.100110	NR_045050		9130015A21Rik	100043575|Gm4527	RIKEN cDNA 9130015A21 gene	ncRNA	0.000000	0.482587	
mm_133067.1	chr16	58670141	58670341	+	1	NA	NA	NA	33	NM_007757	12892	Mm.291519	NM_007757	ENSMUSG00000022742	Cpox	CPX|Cpo|HCP|cac|nct	coproporphyrinogen oxidase	protein-coding	0.070000	0.651741	
mm_95871.1	chr11	58049553	58049753	+	1	NA	NA	NA	40589	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.000000	0.527363	
mm_128115.1	chr15	28025916	28026116	-	1	NA	NA	NA	-168	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.080000	0.676617	
mm_82040.1	chr9	122128859	122129059	+	1	NA	NA	NA	11693	NM_133741	20623	Mm.257989	NM_133741	ENSMUSG00000038145	Snrk	2010012F07Rik|AI448042|AW547029|E030034B15|R74830|mKIAA0096	SNF related kinase	protein-coding	0.015000	0.447761	
mm_69106.1	chr7	127021047	127021247	-	1	NA	NA	NA	64	NM_001102563	69017	Mm.392047	NM_001102563	ENSMUSG00000045114	Prrt2	1500031I19Rik|AI195361|DSPB3	proline-rich transmembrane protein 2	protein-coding	0.075000	0.701493	
mm_58621.1	chr7	5069002	5069202	+	1	NA	NA	NA	6959	NM_001205231	22185	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.000000	0.432836	
mm_104915.1	chr11	99759128	99759328	-	1	NA	NA	NA	13685	NM_001126322	100040276	Mm.475095	NM_001126322	ENSMUSG00000078668	Gm11595	OTTMUSG00000002543	predicted gene 11595	protein-coding	0.005000	0.472637	-33(GGGTATAAAAGC,-,0.00),17(CTTCTTATAGAC,+,0.00)
mm_149591.1	chr19	16140983	16141183	+	1	NA	NA	NA	8252	NM_008139	14682	Mm.439701	NM_008139	ENSMUSG00000024639	Gnaq	1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI	guanine nucleotide binding protein, alpha q polypeptide	protein-coding	0.010000	0.497512	
mm_107881.1	chr12	69987095	69987295	+	1	NA	NA	NA	-193	NM_022028	64010	Mm.390480	NM_022028	ENSMUSG00000021067	Sav1	1700040G09Rik|Salv|Sav|WW45|Wwp3|Wwp4	salvador family WW domain containing 1	protein-coding	0.180000	0.810945	
mm_28440.1	chr3	90490907	90491107	-	1	NA	NA	NA	6	NM_133854	20615	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	0.100000	0.696517	
mm_117629.1	chr13	92131544	92131744	-	1	NA	NA	NA	-143602	NM_009027	19418	Mm.248630	NM_009027	ENSMUSG00000021708	Rasgrf2	6330417G04Rik|AW048350|Grf2|Ras-GRF2	RAS protein-specific guanine nucleotide-releasing factor 2	protein-coding	0.115000	0.746269	
mm_1821.1	chr1	82586824	82587024	+	1	NA	NA	NA	3	NM_007734	12828	Mm.389135	NM_007734	ENSMUSG00000079465	Col4a3	[a]3(IV)|alpha3(IV)	collagen, type IV, alpha 3	protein-coding	0.050000	0.641791	
mm_80681.1	chr9	91362006	91362206	+	1	NA	NA	NA	3693	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.040000	0.577114	
mm_100008.1	chr11	114851964	114852164	+	1	NA	NA	NA	34	NM_147217	70355	Mm.242413	NM_147217	ENSMUSG00000051043	Gprc5c	1110028I06Rik|3200002M13Rik|Raig3	G protein-coupled receptor, family C, group 5, member C	protein-coding	0.075000	0.716418	
mm_82166.1	chr9	123806398	123806598	+	1	NA	NA	NA	21	NM_030712	80901	Mm.124289	NM_030712	ENSMUSG00000048521	Cxcr6	BB217514|BONZO|STRL33	chemokine (C-X-C motif) receptor 6	protein-coding	0.010000	0.492537	
mm_1061.1	chr1	58973596	58973796	+	1	NA	NA	NA	125	NM_172656	227154	Mm.286006	NM_172656	ENSMUSG00000026027	Stradb	AA792893|Als2cr2|B830008M19|D1Ucla2|ILPIP|ILPIPA|PRO1038|Papk|Syradb	STE20-related kinase adaptor beta	protein-coding	0.110000	0.736318	
mm_142733.1	chr17	48352169	48352369	-	1	NA	NA	NA	5868	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.000000	0.512438	
mm_127204.1	chr15	99126702	99126902	+	1	NA	NA	NA	-43	NM_139140	72572	Mm.276650	NM_139140	ENSMUSG00000051934	Spats2	2700012F11Rik|59kDa|Scr59|p59	spermatogenesis associated, serine-rich 2	protein-coding	0.130000	0.761194	
mm_48900.1	chr6	3201327	3201527	+	1	NA	NA	NA	-87092	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.085000	0.492537	
mm_115712.1	chr13	15853010	15853210	-	1	NA	NA	NA	45867	NR_046131	328190	Mm.446957	NR_046131		A530046M15Rik	A530046M15	RIKEN cDNA A530046M15 gene	ncRNA	0.000000	0.477612	
mm_171588.1	chr4	147642205	147642405	-	1	NA	NA	NA	203	NM_145078	112422	Mm.327194	NM_145078	ENSMUSG00000066000	Zfp979	2610305D13Rik|Ssm1b	zinc finger protein 979	protein-coding	0.010000	0.467662	
mm_101847.1	chr11	48826212	48826412	-	1	NA	NA	NA	174	NM_053166	94089	Mm.390335	NM_053166	ENSMUSG00000040350	Trim7	AI790312	tripartite motif-containing 7	protein-coding	0.135000	0.706468	
mm_70732.1	chr8	18846434	18846634	+	1	NA	NA	NA	255	NM_026792	52123	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	0.130000	0.751244	
mm_62609.1	chr7	106814048	106814248	+	1	NA	NA	NA	4	NM_028910	66786	Mm.159186	NM_028910	ENSMUSG00000036744	Olfr701	4932441H21Rik|4933433E02Rik|MOR283-1	olfactory receptor 701	protein-coding	0.005000	0.457711	
mm_109017.1	chr12	103442232	103442432	+	1	NA	NA	NA	1348	NM_029803	76933	Mm.271275	NM_029803	ENSMUSG00000079017	Ifi27l2a	2310061N23Rik|Ifi27|Isg12|Isg12(b1)	interferon, alpha-inducible protein 27 like 2A	protein-coding	0.005000	0.532338	
mm_123437.1	chr14	64812964	64813164	-	1	NA	NA	NA	136793	NM_177338	219150	Mm.344074	NM_177338	ENSMUSG00000021972	Hmbox1	AI451877|AI604847|F830020C16Rik	homeobox containing 1	protein-coding	0.015000	0.562189	
mm_118171.1	chr13	106836209	106836409	-	1	NA	NA	NA	100606	NM_029665	76582	Mm.132208	NM_029665	ENSMUSG00000042590	Ipo11	1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11	importin 11	protein-coding	0.035000	0.477612	-33(GCTTTAAAATTC,+,0.00)
mm_80853.1	chr9	98424784	98424984	+	1	NA	NA	NA	1923	NM_011254	19659	Mm.279741	NM_011254	ENSMUSG00000046402	Rbp1	CRBPI|Crbp|Rbp-1	retinol binding protein 1, cellular	protein-coding	0.085000	0.661692	
mm_167733.1	chr9	105829860	105830060	-	1	NA	NA	NA	-1875	NM_001102607	245026	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0.005000	0.472637	
mm_113078.1	chr13	23819769	23819969	+	1	NA	NA	NA	12842	NM_144836	218103	Mm.24030	NM_144836	ENSMUSG00000036110	Slc17a2	C730032N17Rik|NPT3	solute carrier family 17 (sodium phosphate), member 2	protein-coding	0.005000	0.467662	
mm_171051.1	chr3	102983792	102983992	+	1	NA	NA	NA	-11848	NM_025679	66641	Mm.33937	NM_025679	ENSMUSG00000027854	Sike1	2810005O12Rik|5730470L24Rik|AI450236|AI839862|Sike|Sikeb	suppressor of IKBKE 1	protein-coding	0.050000	0.636816	
mm_12087.1	chr2	60211883	60212083	+	1	NA	NA	NA	2047	NM_020575	57438	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.020000	0.492537	
mm_117654.1	chr13	93188748	93188948	-	1	NA	NA	NA	3435	NM_133905	100715	Mm.242865	NM_133905	ENSMUSG00000042167	Papd4	8030446C20Rik|AI649009|GLD-2|Gld2	PAP associated domain containing 4	protein-coding	0.010000	0.253731	
mm_45870.1	chr5	88008127	88008327	-	1	NA	NA	NA	5702	NM_011422	20599	Mm.261199	NM_011422	ENSMUSG00000029280	Smr3a	AA589601|MSG1|MSG3|Smr1|Smr3	submaxillary gland androgen regulated protein 3A	protein-coding	0.015000	0.567164	
mm_121431.1	chr14	120397051	120397251	+	1	NA	NA	NA	-81310	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.020000	0.502488	
mm_115259.1	chr13	110400526	110400726	+	1	NA	NA	NA	5582	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.005000	0.412935	-14(CTGTTTAAAGGC,-,0.00)
mm_115316.1	chr13	112366046	112366246	+	1	NA	NA	NA	77628	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.015000	0.373134	
mm_11763.1	chr2	38533592	38533792	+	1	NA	NA	NA	21816	NM_001159631	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.000000	0.462687	-32(GCTTATAAAGTC,+,0.00)
mm_65231.1	chr7	19733032	19733232	-	1	NA	NA	NA	16441	NM_008990	19294	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.030000	0.606965	
mm_44849.1	chr5	34196517	34196717	-	1	NA	NA	NA	-8907	NM_010753	17122	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.020000	0.572139	
mm_75409.1	chr8	46430065	46430265	-	1	NA	NA	NA	-40872	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.025000	0.572139	
mm_147332.1	chr18	42877836	42878036	-	1	NA	NA	NA	21570	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.015000	0.318408	
mm_34017.1	chr4	137995733	137995933	+	1	NA	NA	NA	2377	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.020000	0.457711	-8(GCCTCTTTAAGC,-,0.00)
mm_76617.1	chr8	91313282	91313482	-	1	NA	NA	NA	-143	NM_011936	26383	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	0.075000	0.577114	
mm_169377.1	chr14	37235927	37236127	-	1	NA	NA	NA	-100705	NM_078478	66092	Mm.182912	NM_078478	ENSMUSG00000041028	Ghitm	1010001P14Rik|C77840|MICS1|PTD010|Tmbim5	growth hormone inducible transmembrane protein	protein-coding	0.070000	0.527363	-34(CTCCTTAAGAGG,-,0.00)
mm_96273.1	chr11	62846975	62847175	+	1	NA	NA	NA	-48	NM_001033669	213980	Mm.482259	NM_001033669	ENSMUSG00000090173	Fbxw10	Fbw10|HREP|SM25H2|SM2SH2	F-box and WD-40 domain protein 10	protein-coding	0.015000	0.437811	
mm_118426.1	chr14	7941554	7941754	+	1	NA	NA	NA	52528	NM_007870	13421	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.015000	0.517413	
mm_166766.1	chr6	134033995	134034195	+	1	NA	NA	NA	-1605	NM_001303102	14011	Mm.269995	NM_007961	ENSMUSG00000030199	Etv6	AW123102|AW557856|Tel	ets variant 6	protein-coding	0.015000	0.437811	
mm_7307.1	chr1	97977268	97977468	-	1	NA	NA	NA	70425	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA	0.020000	0.512438	
mm_41226.1	chr5	88650647	88650847	+	1	NA	NA	NA	24833	NM_001098476	231413	Mm.332474	NM_178700	ENSMUSG00000044221	Grsf1	BB232551|C80280|D5Wsu31e	G-rich RNA sequence binding factor 1	protein-coding	0.000000	0.368159	
mm_72363.1	chr8	80770495	80770695	+	1	NA	NA	NA	-31136	NM_053124	93762	Mm.246803	NM_053124	ENSMUSG00000031715	Smarca5	4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5	protein-coding	0.040000	0.532338	
mm_69738.1	chr7	140900310	140900510	-	1	NA	NA	NA	36	NM_007751	12869	Mm.3841	NM_007751	ENSMUSG00000025488	Cox8b	Cox8h|CoxVIII-H	cytochrome c oxidase subunit VIIIb	protein-coding	0.025000	0.592040	-35(AGCTATAAAAAG,-,0.00)
mm_124025.1	chr14	76575888	76576088	-	1	NA	NA	NA	-19099	NR_027699	72661	Mm.320384	NM_001160326	ENSMUSG00000052584	Serp2	2810032E02Rik	stress-associated endoplasmic reticulum protein family member 2	protein-coding	0.010000	0.477612	-18(ATGTATATAAGC,-,0.00)
mm_139758.1	chr17	64600392	64600592	+	1	NA	NA	NA	-1157	NM_008549	17158	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.025000	0.592040	
mm_85956.1	chr9	112124267	112124467	-	1	NA	NA	NA	-5656	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.010000	0.472637	
mm_63792.1	chr7	132664652	132664852	+	1	NA	NA	NA	54109	NM_029609	76429	Mm.276721	NM_029609	ENSMUSG00000030946	Lhpp	2310007H09Rik	phospholysine phosphohistidine inorganic pyrophosphate phosphatase	protein-coding	0.000000	0.497512	
mm_17659.1	chr2	32065348	32065548	-	1	NA	NA	NA	14502	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	0.015000	0.487562	
mm_139583.1	chr17	57222111	57222311	+	1	NA	NA	NA	-4983	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.010000	0.527363	
mm_148152.1	chr18	77565078	77565278	-	1	NA	NA	NA	-42	NM_001164504	225743	Mm.23293	NM_001164504	ENSMUSG00000025427	Rnf165	2900024M11Rik|AI427432|Akd2|Ark2c|G630064H08Rik|Gm96	ring finger protein 165	protein-coding	0.160000	0.810945	
mm_156437.1	chrX	142060692	142060892	+	1	NA	NA	NA	136144	NM_001007576	245650	Mm.208511	NM_001007576	ENSMUSG00000042282	Gucy2f	A930002I06|GC-F|GC2	guanylate cyclase 2f	protein-coding	0.020000	0.462687	
mm_69815.1	chr7	141263881	141264081	-	1	NA	NA	NA	2443	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.020000	0.582090	
mm_131604.1	chr16	19179427	19179627	+	1	NA	NA	NA	107214	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.000000	0.412935	
mm_162831.1	chr10	81596607	81596807	-	1	NA	NA	NA	4193	NM_053254	114606	Mm.206764	NM_053254	ENSMUSG00000034758	Tle6	1810057E06Rik|Grg6	transducin-like enhancer of split 6	protein-coding	0.040000	0.592040	
mm_161338.1	chr14	51203364	51203564	+	1	NA	NA	NA	-226	NM_001017422	53877	Mm.377124	NM_001017422		Ear4	RNS2|Rnase2|mR4	eosinophil-associated, ribonuclease A family, member 4	protein-coding	0.000000	0.512438	
mm_93789.1	chr10	120636005	120636205	-	1	NA	NA	NA	-129627	NR_038000	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.035000	0.557214	
mm_26582.1	chr3	149334754	149334954	+	1	NA	NA	NA	60117	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.020000	0.527363	
mm_32283.1	chr4	102989513	102989713	+	1	NA	NA	NA	142	NR_040444	100504717	Mm.394445	NR_040444	ENSMUSG00000085181	Gm12709	OTTMUSG00000008056	predicted gene 12709	ncRNA	0.020000	0.437811	
mm_9158.1	chr1	170959980	170960180	-	1	NA	NA	NA	15991	NM_001077189	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.010000	0.487562	
mm_88381.1	chr10	76447283	76447483	+	1	NA	NA	NA	-1698	NM_029816	76964	Mm.472489	NM_029816	ENSMUSG00000009114	2610028H24Rik	ORF67	RIKEN cDNA 2610028H24 gene	protein-coding	0.010000	0.527363	
mm_45316.1	chr5	65435805	65436005	-	1	NA	NA	NA	-63	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.100000	0.726368	
mm_157494.1	chrX	48454073	48454273	-	1	NA	NA	NA	8959	NM_019680	56501	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|ENSMUSG00000053512|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	0.110000	0.681592	
mm_77732.1	chr8	126881732	126881932	-	1	NA	NA	NA	64089	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.010000	0.512438	
mm_66564.1	chr7	45239212	45239412	-	1	NA	NA	NA	-197	NM_001290804	12493	Mm.3689	NM_007645	ENSMUSG00000030798	Cd37	Tspan26	CD37 antigen	protein-coding	0.015000	0.582090	
mm_39496.1	chr5	21054941	21055141	+	1	NA	NA	NA	756	NM_011203	19248	Mm.319117	NM_011203	ENSMUSG00000028771	Ptpn12	P19-PTP|PTP-P19|PTP-PEST|PTPG1	protein tyrosine phosphatase, non-receptor type 12	protein-coding	0.025000	0.512438	
mm_147186.1	chr18	37178412	37178612	-	1	NA	NA	NA	34543	NM_001003672	353237	Mm.308500	NM_001003672	ENSMUSG00000102697	Pcdhac2	CNRc2	protocadherin alpha subfamily C, 2	protein-coding	0.035000	0.597015	-46(GGCTATTAAATG,-,0.00)
mm_172398.1	chr7	141924101	141924301	-	1	NA	NA	NA	-21740	NM_001347562	54473	Mm.103551	NM_023764	ENSMUSG00000025139	Tollip	4930403G24Rik|4931428G15Rik	toll interacting protein	protein-coding	0.030000	0.512438	-34(GTGTATATAAGC,-,0.00)
mm_63668.1	chr7	129831825	129832025	+	1	NA	NA	NA	-130240	NR_046077	100043150	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0.000000	0.422886	
mm_85711.1	chr9	108190326	108190526	-	1	NA	NA	NA	-43	NM_007567	12217	Mm.20425	NM_007567	ENSMUSG00000032589	Bsn	-	bassoon	protein-coding	0.145000	0.751244	
mm_82083.1	chr9	123034571	123034771	+	1	NA	NA	NA	-70	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.010000	0.482587	37(GCATATAAAAAG,-,0.00)
mm_123548.1	chr14	66831383	66831583	-	1	NA	NA	NA	37117	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.000000	0.472637	
mm_101127.1	chr11	12309639	12309839	-	1	NA	NA	NA	102401	NM_001282994	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.015000	0.532338	
mm_148591.1	chr19	5069339	5069539	+	1	NA	NA	NA	1361	NM_054042	70445	Mm.29597	NM_054042	ENSMUSG00000056481	Cd248	2610111G01Rik|AI842296|Cd164l1|Tem1	CD248 antigen, endosialin	protein-coding	0.010000	0.592040	-89(CCCTATAGGCCC,+,0.00)
mm_58244.1	chr6	145048563	145048763	-	1	NA	NA	NA	149	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.105000	0.686567	
mm_37459.1	chr4	123444810	123445010	-	1	NA	NA	NA	-32999	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.005000	0.457711	
mm_3464.1	chr1	150104231	150104431	+	1	NA	NA	NA	4300	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.020000	0.442786	
mm_151055.1	chr19	47178917	47179117	+	1	NA	NA	NA	197	NM_021360	18011	Mm.313651	NM_021360	ENSMUSG00000006435	Neurl1a	2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Neurl1|Nlz|Rnf67	neuralized E3 ubiquitin protein ligase 1A	protein-coding	0.180000	0.825871	
mm_90683.1	chr10	128911396	128911596	+	1	NA	NA	NA	1630	NM_007653	12512	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.030000	0.562189	
mm_115041.1	chr13	99550843	99551043	+	1	NA	NA	NA	-34341	NM_008634	17755	Mm.4173	NM_008634	ENSMUSG00000052727	Map1b	A230055D22|AI843217|LC1|MAP5|Mtap-5|Mtap1b|Mtap5	microtubule-associated protein 1B	protein-coding	0.010000	0.447761	
mm_32323.1	chr4	103685663	103685863	+	1	NA	NA	NA	303263	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA	0.005000	0.363184	
mm_14068.1	chr2	122738525	122738725	+	1	NA	NA	NA	120	NM_019788	18457	Mm.268921	NM_019788	ENSMUSG00000005804	Bloc1s6	BLOC-1|Pldn|Stx13bp1|pa	biogenesis of lysosomal organelles complex-1, subunit 6, pallidin	protein-coding	0.105000	0.656716	
mm_26617.1	chr3	152395925	152396125	+	1	NA	NA	NA	22	NM_001080755	108946	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.155000	0.796020	
mm_16437.1	chr2	180394427	180394627	+	1	NA	NA	NA	-3852	NR_029901	723954		NR_029901	ENSMUSG00000065460	Mir133a-2	Mirn133a-2|mir-133a-2	microRNA 133a-2	ncRNA	0.005000	0.442786	
mm_145908.1	chr18	65806032	65806232	+	1	NA	NA	NA	5554	NM_025468	66286	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0.025000	0.507463	
mm_73596.1	chr8	109998679	109998879	+	1	NA	NA	NA	8343	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.025000	0.507463	
mm_86616.1	chr10	13965234	13965434	+	1	NA	NA	NA	-1045	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.050000	0.522388	
mm_54690.1	chr6	39423360	39423560	-	1	NA	NA	NA	-3091	NM_018810	54484	Mm.270484	NM_018810	ENSMUSG00000029922	Mkrn1	RFP	makorin, ring finger protein, 1	protein-coding	0.015000	0.572139	
mm_5078.1	chr1	4360142	4360342	-	1	NA	NA	NA	72	NM_011283	19888	Mm.294263	NM_011283	ENSMUSG00000025900	Rp1	Dcdc3|Orp1|Rp1h|mG145	retinitis pigmentosa 1 (human)	protein-coding	0.015000	0.318408	
mm_23941.1	chr3	84480185	84480385	+	1	NA	NA	NA	154	NM_001033301	229474	Mm.331107	NM_001033301	ENSMUSG00000041842	Fhdc1	6330505N24Rik|Gm126	FH2 domain containing 1	protein-coding	0.120000	0.736318	
mm_69347.1	chr7	130216796	130216996	-	1	NA	NA	NA	49912	NM_010207	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	0.005000	0.378109	
mm_87035.1	chr10	28668449	28668649	+	1	NA	NA	NA	189	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.015000	0.487562	
mm_105688.1	chr11	107733929	107734129	-	1	NA	NA	NA	-17553	NM_007582	12299	Mm.57093	NM_007582	ENSMUSG00000020722	Cacng1	-	calcium channel, voltage-dependent, gamma subunit 1	protein-coding	0.015000	0.562189	
mm_77100.1	chr8	111027635	111027835	-	1	NA	NA	NA	35	NM_172284	234733	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	0.105000	0.676617	
mm_68657.1	chr7	118694983	118695183	-	1	NA	NA	NA	10655	NM_019580	56209	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	0.015000	0.477612	
mm_124851.1	chr15	9526972	9527172	+	1	NA	NA	NA	2804	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.005000	0.532338	-37(GGGCCTATAAAG,-,0.00)
mm_148068.1	chr18	72340106	72340306	-	1	NA	NA	NA	10863	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.005000	0.457711	
mm_37962.1	chr4	133353361	133353561	-	1	NA	NA	NA	-14146	NM_199306	230796	Mm.226576	NM_199306	ENSMUSG00000037622	Wdtc1	Gm695|adipose|adp	WD and tetratricopeptide repeats 1	protein-coding	0.030000	0.517413	55(GTCTCGAAAAGG,-,0.00)
mm_156172.1	chrX	130213102	130213302	+	1	NA	NA	NA	463460	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.000000	0.293532	
mm_94158.1	chr10	128744984	128745184	-	1	NA	NA	NA	-1028	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.010000	0.402985	
mm_89.1	chr1	7089054	7089254	+	1	NA	NA	NA	234	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.130000	0.716418	
mm_26932.1	chr3	20262477	20262677	-	1	NA	NA	NA	13156	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.020000	0.447761	
mm_76782.1	chr8	99416239	99416439	-	1	NA	NA	NA	132	NM_001285913	12564	Mm.441131	NM_007667	ENSMUSG00000036510	Cdh8	AI851472|cad8	cadherin 8	protein-coding	0.070000	0.606965	
mm_43966.1	chr5	145345162	145345362	+	1	NA	NA	NA	-8	NM_001100180	622127	Mm.359379	NM_001100180	ENSMUSG00000070419	Cyp3a57	EG622127	cytochrome P450, family 3, subfamily a, polypeptide 57	protein-coding	0.005000	0.512438	
mm_32457.1	chr4	107368231	107368431	+	1	NA	NA	NA	547	NM_028355	72787	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0.045000	0.512438	
mm_23279.1	chr3	51661078	51661278	+	1	NA	NA	NA	-1	NM_174995	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.005000	0.452736	-36(GCCTTTATAAAG,-,0.00),-34(CTTTATAAAGGA,+,0.00)
mm_50616.1	chr6	49823658	49823858	+	1	NA	NA	NA	1048	NM_023456	109648	Mm.154796	NM_023456	ENSMUSG00000029819	Npy	0710005A05Rik	neuropeptide Y	protein-coding	0.055000	0.577114	
mm_164500.1	chr16	91534592	91534792	-	1	NA	NA	NA	-12402	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.050000	0.606965	
mm_116681.1	chr13	49248057	49248257	-	1	NA	NA	NA	6	NM_025491	66329	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.105000	0.671642	
mm_143867.1	chr17	84186665	84186865	-	1	NA	NA	NA	1182	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.095000	0.651741	
mm_109847.1	chr12	4593683	4593883	-	1	NA	NA	NA	775	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.055000	0.507463	-57(CTATATATACCC,+,0.00)
mm_137586.1	chr17	28007910	28008110	+	1	NA	NA	NA	72574	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.045000	0.681592	
mm_80120.1	chr9	70573512	70573712	+	1	NA	NA	NA	30742	NM_025690	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.010000	0.447761	
mm_56293.1	chr6	91493140	91493340	-	1	NA	NA	NA	19489	NM_028766	74122	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	0.045000	0.587065	
mm_18882.1	chr2	76647918	76648118	-	1	NA	NA	NA	-24	NM_011871	23992	Mm.277250	NM_011871	ENSMUSG00000002731	Prkra	AV120107|PRK|Pact|RAX|lear	protein kinase, interferon inducible double stranded RNA dependent activator	protein-coding	0.085000	0.701493	
mm_88948.1	chr10	81357444	81357644	+	1	NA	NA	NA	-26	NM_028657	73822	Mm.182281	NM_028657	ENSMUSG00000034854	Mfsd12	C19orf28|F630110N24Rik|Wdt1	major facilitator superfamily domain containing 12	protein-coding	0.185000	0.786070	
mm_113384.1	chr13	33027408	33027608	+	1	NA	NA	NA	94	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	0.000000	0.497512	
mm_58366.1	chr6	148831301	148831501	-	1	NA	NA	NA	66	NM_001081113	320727	Mm.260105	NM_001081113	ENSMUSG00000040029	Ipo8	6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8	importin 8	protein-coding	0.045000	0.641791	
mm_134132.1	chr16	10542962	10543162	-	1	NA	NA	NA	-8	NM_021428	58239	Mm.353006	NM_021428	ENSMUSG00000038055	Dexi	1810029J14Rik|AI836170|AW413143|D16Bwg0586e|Myle	dexamethasone-induced transcript	protein-coding	0.095000	0.671642	
mm_1054.1	chr1	58846711	58846911	+	1	NA	NA	NA	44309	NM_001080126	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.005000	0.363184	65(CCCTTTAAACCC,+,0.00)
mm_35130.1	chr4	11254120	11254320	-	1	NA	NA	NA	39	NM_178112	72656	Mm.246713	NM_178112	ENSMUSG00000040738	Ints8	2810013E07Rik|AV063769|D130008D20Rik	integrator complex subunit 8	protein-coding	0.095000	0.661692	
mm_5782.1	chr1	51585165	51585365	-	1	NA	NA	NA	-106866	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.000000	0.452736	
mm_49345.1	chr6	21985838	21986038	+	1	NA	NA	NA	28	NM_001081351	214642	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.100000	0.651741	-62(GGCCAGAAAAAG,-,0.00)
mm_129526.1	chr15	79261193	79261393	-	1	NA	NA	NA	-6545	NM_020516	57274	Mm.441697	NM_020516	ENSMUSG00000032988	Slc16a8	Mct3	solute carrier family 16 (monocarboxylic acid transporters), member 8	protein-coding	0.080000	0.661692	
mm_36789.1	chr4	103114116	103114316	-	1	NA	NA	NA	83	NM_146254	242584	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	0.095000	0.676617	40(TGGTCTAAAAAG,-,0.00)
mm_110306.1	chr12	33061683	33061883	-	1	NA	NA	NA	31092	NM_001024478	68764	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	0.020000	0.537313	
mm_32893.1	chr4	118965232	118965432	+	1	NA	NA	NA	3365	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.010000	0.497512	
mm_142254.1	chr17	37713770	37713970	-	1	NA	NA	NA	-12129	NM_146631	258624	Mm.272073	NM_146631	ENSMUSG00000063994	Olfr120	MOR263-3	olfactory receptor 120	protein-coding	0.060000	0.522388	
mm_80382.1	chr9	75438028	75438228	+	1	NA	NA	NA	-3396	NM_001039522	235497	Mm.41508	NM_001006122	ENSMUSG00000042487	Leo1	Gm185	Leo1, Paf1/RNA polymerase II complex component	protein-coding	0.020000	0.557214	-34(CGCTATAAAAGG,-,0.00)
mm_133487.1	chr16	90220539	90220739	+	1	NA	NA	NA	-103	NM_011434	20655	Mm.276325	NM_011434	ENSMUSG00000022982	Sod1	B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1	superoxide dismutase 1, soluble	protein-coding	0.100000	0.676617	83(GCCTATAAAAGC,-,0.00)
mm_170876.1	chr2	20899923	20900123	+	1	NA	NA	NA	67698	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.075000	0.507463	74(AACTTTAAATGG,-,0.00)
mm_14319.1	chr2	129314068	129314268	+	1	NA	NA	NA	-4196	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.005000	0.467662	
mm_160453.1	chr8	106212214	106212414	+	1	NA	NA	NA	1260	NM_145404	214572	Mm.251804	NM_145404	ENSMUSG00000060098	Prmt7	4933402B05Rik|BC006705	protein arginine N-methyltransferase 7	protein-coding	0.005000	0.328358	
mm_102564.1	chr11	61488148	61488348	-	1	NA	NA	NA	2804	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.005000	0.537313	
mm_23338.1	chr3	54692721	54692921	+	1	NA	NA	NA	-284	NM_019995	56790	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0.080000	0.651741	
mm_116780.1	chr13	53146543	53146743	-	1	NA	NA	NA	139466	NM_013846	26564	Mm.342774	NM_013846	ENSMUSG00000021464	Ror2	Ntrkr2|mRor2	receptor tyrosine kinase-like orphan receptor 2	protein-coding	0.025000	0.522388	
mm_165444.1	chr2	155249909	155250109	+	1	NA	NA	NA	13401	NM_001291108	67068	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	0.010000	0.472637	
mm_147960.1	chr18	67066361	67066561	-	1	NA	NA	NA	-21837	NM_177137	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.020000	0.522388	-25(GCTCTTATACTC,+,0.00)
mm_32894.1	chr4	118967736	118967936	+	1	NA	NA	NA	5869	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.030000	0.562189	
mm_121000.1	chr14	79481075	79481275	+	1	NA	NA	NA	-19	NM_007920	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.125000	0.716418	-30(CGGTATAAAGGG,-,0.00)
mm_1024.1	chr1	58754650	58754850	+	1	NA	NA	NA	24198	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.005000	0.577114	
mm_159343.1	chr3	59925132	59925332	+	1	NA	NA	NA	18	NM_177661	229333	Mm.75765	NM_177661	ENSMUSG00000036951	C130079G13Rik	-	RIKEN cDNA C130079G13 gene	protein-coding	0.005000	0.318408	
mm_59965.1	chr7	30428276	30428476	+	1	NA	NA	NA	5072	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.010000	0.462687	
mm_39020.1	chr4	152131398	152131598	-	1	NA	NA	NA	-2573	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.060000	0.711443	
mm_1015.1	chr1	58729458	58729658	+	1	NA	NA	NA	-994	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.005000	0.512438	
mm_36417.1	chr4	78211758	78211958	-	1	NA	NA	NA	37	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.165000	0.796020	85(CACTTTTAAAGA,-,0.00),86(ACTTTTAAAGAA,+,0.00)
mm_68493.1	chr7	111076066	111076266	-	1	NA	NA	NA	6864	NM_001040131	13690	Mm.185453	NM_013507	ENSMUSG00000005610	Eif4g2	DAP-5|E130105L11Rik|Nat1|Natm1|p97	eukaryotic translation initiation factor 4, gamma 2	protein-coding	0.020000	0.383085	-52(GATTATAAAAAG,-,0.00)
mm_127783.1	chr15	3542316	3542516	-	1	NA	NA	NA	39426	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.000000	0.278607	
mm_9042.1	chr1	167269513	167269713	-	1	NA	NA	NA	15514	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.045000	0.567164	
mm_117120.1	chr13	60864305	60864505	-	1	NA	NA	NA	11	NM_178098	214639	Mm.19839	NM_178098	ENSMUSG00000050345	4930486L24Rik	AW545031	RIKEN cDNA 4930486L24 gene	protein-coding	0.005000	0.512438	
mm_87179.1	chr10	39133869	39134069	+	1	NA	NA	NA	-54	NM_028006	71924	Mm.297956	NM_028006	ENSMUSG00000019845	Tube1	2310061K05Rik|AI551343|Tube	epsilon-tubulin 1	protein-coding	0.085000	0.587065	
mm_66653.1	chr7	45712215	45712415	-	1	NA	NA	NA	2892	NM_020011	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.030000	0.577114	
mm_114911.1	chr13	94976293	94976493	+	1	NA	NA	NA	49	NM_172590	218460	Mm.33856	NM_172590	ENSMUSG00000042015	Wdr41	B830029I03Rik|MSTP048	WD repeat domain 41	protein-coding	0.140000	0.741294	
mm_147812.1	chr18	61719714	61719914	-	1	NA	NA	NA	6517	NM_021296	17714	Mm.269657	NM_021296	ENSMUSG00000024580	Grpel2	mt-GrpE#2|mt-Grpel2	GrpE-like 2, mitochondrial	protein-coding	0.015000	0.567164	
mm_91084.1	chr10	19014469	19014669	-	1	NA	NA	NA	841	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.020000	0.547264	
mm_14654.1	chr2	136934929	136935129	+	1	NA	NA	NA	35678	NM_001038641	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.005000	0.402985	
mm_128338.1	chr15	38518122	38518322	-	1	NA	NA	NA	1044	NM_001301688	54375	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.055000	0.582090	
mm_39898.1	chr5	31204970	31205170	+	1	NA	NA	NA	-2767	NM_175311	101023	Mm.45033	NM_175311	ENSMUSG00000043059	Zfp513	AW990386|D430028M17Rik|Znf513	zinc finger protein 513	protein-coding	0.025000	0.517413	
mm_91288.1	chr10	24828607	24828807	-	1	NA	NA	NA	7488	NM_134005	209558	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	0.000000	0.323383	73(GTGTATATGAGG,-,0.00)
mm_113814.1	chr13	46669431	46669631	+	1	NA	NA	NA	9	NM_001033192	97863	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	0.130000	0.756219	
mm_172613.1	chr8	19492822	19493022	+	1	NA	NA	NA	-2175	NM_139220	246080	Mm.207067	NM_139220	ENSMUSG00000037790	Defb7	BD-7|Defb15	defensin beta 7	protein-coding	0.030000	0.472637	
mm_4787.1	chr1	184118175	184118375	+	1	NA	NA	NA	83814	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.005000	0.417910	
mm_113567.1	chr13	38328673	38328873	+	1	NA	NA	NA	-16943	NM_007556	12161	Mm.385759	NM_007556	ENSMUSG00000039004	Bmp6	D13Wsu115e|Vgr1	bone morphogenetic protein 6	protein-coding	0.030000	0.447761	-32(ATATTTAAAAGG,-,0.00)
mm_13500.1	chr2	107290573	107290773	+	1	NA	NA	NA	84	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding	0.055000	0.616915	
mm_170841.1	chr2	177294363	177294563	+	1	NA	NA	NA	-170279	NM_001177568	628308	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420|OTTMUSG00000016588	zinc finger protein 970	protein-coding	0.015000	0.477612	
mm_150606.1	chr19	40831170	40831370	+	1	NA	NA	NA	-9	NM_172839	240665	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.160000	0.751244	
mm_117135.1	chr13	60939892	60940092	-	1	NA	NA	NA	1943	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding	0.005000	0.378109	
mm_5500.1	chr1	37169844	37170044	-	1	NA	NA	NA	-48334	NM_001282010	12790	Mm.214224	NM_009918	ENSMUSG00000026114	Cnga3	CNG3	cyclic nucleotide gated channel alpha 3	protein-coding	0.005000	0.482587	
mm_168438.1	chr1	136695980	136696180	+	1	NA	NA	NA	-131	NR_037986	100503474	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0.015000	0.552239	
mm_79455.1	chr9	56166348	56166548	+	1	NA	NA	NA	-5378	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.010000	0.552239	
mm_23555.1	chr3	62159214	62159414	+	1	NA	NA	NA	-179463	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	0.075000	0.666667	
mm_40201.1	chr5	36953956	36954156	+	1	NA	NA	NA	34926	NM_011716	22393	Mm.20916	NM_011716	ENSMUSG00000039474	Wfs1	AI481085|wolframin	Wolfram syndrome 1 homolog (human)	protein-coding	0.010000	0.482587	
mm_68009.1	chr7	100939016	100939216	-	1	NA	NA	NA	-6955	NM_001081116	207212	Mm.29954	NM_001081116	ENSMUSG00000032875	Arhgef17	8030463K16|AI428794|AW558066|BC035332|mKIAA0337	Rho guanine nucleotide exchange factor (GEF) 17	protein-coding	0.040000	0.577114	
mm_79262.1	chr9	50753053	50753253	+	1	NA	NA	NA	182	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.015000	0.522388	48(GCATATATAAGG,-,0.00)
mm_155953.1	chrX	105086862	105087062	+	1	NA	NA	NA	7206	NM_026312	67683	Mm.273405	NM_026312	ENSMUSG00000031226	Pbdc1	2610029G23Rik	polysaccharide biosynthesis domain containing 1	protein-coding	0.025000	0.472637	-7(TTTTTTATACTC,+,0.00)
mm_163715.1	chr13	111577942	111578142	+	1	NA	NA	NA	-88001	NM_001122963	73274	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.030000	0.517413	
mm_131158.1	chr16	6914308	6914508	+	1	NA	NA	NA	-155427	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.000000	0.422886	
mm_46278.1	chr5	100039540	100039740	-	1	NA	NA	NA	-354	NM_026421	67870	Mm.11311	NM_026421	ENSMUSG00000029326	Enoph1	2310057D15Rik|BB183658|C81437	enolase-phosphatase 1	protein-coding	0.105000	0.711443	
mm_82878.1	chr9	32451953	32452153	-	1	NA	NA	NA	58068	NM_001168354	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.020000	0.452736	
mm_98491.1	chr11	94951461	94951661	+	1	NA	NA	NA	15337	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.030000	0.567164	
mm_129256.1	chr15	76710399	76710599	-	1	NA	NA	NA	60	NM_058214	79456	Mm.18373	NM_058214	ENSMUSG00000033762	Recql4	RecQ4	RecQ protein-like 4	protein-coding	0.125000	0.691542	
mm_121693.1	chr14	13961310	13961510	-	1	NA	NA	NA	-97	NM_025435	66231	Mm.295875	NM_025435	ENSMUSG00000053453	Thoc7	Nif3l1bp1	THO complex 7	protein-coding	0.200000	0.850746	
mm_119078.1	chr14	30880393	30880593	+	1	NA	NA	NA	1236	NM_181390	66175	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0.020000	0.567164	
mm_161029.1	chr12	8598965	8599165	-	1	NA	NA	NA	1	NM_177802	328059	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	0.010000	0.457711	-33(GCCTTTATAAGC,+,0.00),-33(GCCTTTATAAGC,-,0.00),78(TGCCATTAAAGC,-,0.00)
mm_112813.1	chr13	20794349	20794549	+	1	NA	NA	NA	336	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.482587	
mm_20778.1	chr2	143983068	143983268	-	1	NA	NA	NA	28095	NM_133626	81910	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.010000	0.552239	
mm_96523.1	chr11	68496519	68496719	+	1	NA	NA	NA	-6400	NM_001004435	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.000000	0.492537	
mm_147371.1	chr18	43438277	43438477	-	1	NA	NA	NA	-91	NM_001291455	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.075000	0.706468	
mm_65145.1	chr7	19584259	19584459	-	1	NA	NA	NA	7072	NM_022409	63872	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0.025000	0.611940	
mm_22828.1	chr3	27241543	27241743	+	1	NA	NA	NA	58639	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.070000	0.567164	
mm_84680.1	chr9	72110726	72110926	-	1	NA	NA	NA	375	NM_001253862	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.060000	0.592040	
mm_41208.1	chr5	88554334	88554534	+	1	NA	NA	NA	-49	NM_023054	65961	Mm.490364	NM_023054	ENSMUSG00000070697	Utp3	2400011K09Rik|AW557551|C87704|Crl1|Crlz1|Sas10	UTP3 small subunit processome component	protein-coding	0.105000	0.646766	-80(GTTTTTAAAAAG,-,0.00)
mm_148595.1	chr19	5088455	5088655	+	1	NA	NA	NA	17	NM_026553	68090	Mm.44202	NM_026553	ENSMUSG00000024875	Yif1a	5330422J23Rik|54TM|Yif1|Yif1p	Yip1 interacting factor homolog A (S. cerevisiae)	protein-coding	0.070000	0.562189	
mm_143694.1	chr17	80424679	80424879	-	1	NA	NA	NA	-51237	NR_028385	791338	Mm.204722	NR_028385		Gm10190	ENSMUSG00000066938	predicted gene 10190	ncRNA	0.015000	0.313433	
mm_140806.1	chr17	22219379	22219579	-	1	NA	NA	NA	6135	NM_001205095	240038	Mm.227945	NM_001205095	ENSMUSG00000096433	Zfp994	EG240038|Gm4944	zinc finger protein 994	protein-coding	0.000000	0.323383	
mm_30602.1	chr4	6393069	6393269	+	1	NA	NA	NA	27489	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.015000	0.407960	
mm_123980.1	chr14	75327784	75327984	-	1	NA	NA	NA	43511	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0.075000	0.572139	
mm_136550.1	chr16	98081897	98082097	-	1	NA	NA	NA	442	NR_015491	320586	Mm.442230	NR_015491		A630089N07Rik	-	RIKEN cDNA A630089N07 gene	ncRNA	0.040000	0.577114	
mm_73738.1	chr8	114133516	114133716	+	1	NA	NA	NA	42	NM_024437	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	0.060000	0.597015	
mm_32840.1	chr4	117835244	117835444	+	1	NA	NA	NA	86	NM_008135	14664	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	0.065000	0.606965	
mm_43463.1	chr5	136692729	136692929	+	1	NA	NA	NA	-317	NM_001303019	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.005000	0.542289	
mm_77825.1	chr9	3532225	3532425	+	1	NA	NA	NA	-24	NM_001033322	234889	Mm.91240	NM_001033322	ENSMUSG00000041624	Gucy1a2	6330407I18Rik|A230060L24Rik	guanylate cyclase 1, soluble, alpha 2	protein-coding	0.095000	0.686567	
mm_135346.1	chr16	43663115	43663315	-	1	NA	NA	NA	969	NM_001146325	100043314	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	ENSMUSG00000071552|Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0.000000	0.517413	
mm_163904.1	chr14	30605775	30605975	-	1	NA	NA	NA	4435	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.045000	0.616915	
mm_157638.1	chrX	57200311	57200511	-	1	NA	NA	NA	-226	NR_038463	100502842	Mm.164733	NR_038463	ENSMUSG00000085808	Gm14718	OTTMUSG00000017790	predicted gene 14718	ncRNA	0.010000	0.348259	
mm_159396.1	chr3	95134069	95134269	+	1	NA	NA	NA	81	NM_153121	217779	Mm.341945	NM_153121	ENSMUSG00000053769	Lysmd1	2610022K04Rik|AI415311	LysM, putative peptidoglycan-binding, domain containing 1	protein-coding	0.025000	0.462687	
mm_94713.1	chr11	20542795	20542995	+	1	NA	NA	NA	-358	NM_021372	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.075000	0.661692	
mm_111974.1	chr12	110023725	110023925	-	1	NA	NA	NA	134248	NR_045466	67280	Mm.390495	NR_045466		3110009F21Rik	-	RIKEN cDNA 3110009F21 gene	ncRNA	0.015000	0.547264	
mm_71281.1	chr8	40919740	40919940	+	1	NA	NA	NA	-6393	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.005000	0.293532	-71(AGCTCTTTAAGG,-,0.00)
mm_67064.1	chr7	67645206	67645406	-	1	NA	NA	NA	-70	NR_028143	67867	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	0.070000	0.611940	
mm_130027.1	chr15	88891425	88891625	-	1	NA	NA	NA	29331	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.030000	0.517413	
mm_158592.1	chrX	150954792	150954992	-	1	NA	NA	NA	62401	NM_001168600	237107	Mm.45987	NM_198110	ENSMUSG00000025266	Gnl3l	BC020354	guanine nucleotide binding protein-like 3 (nucleolar)-like	protein-coding	0.005000	0.487562	
mm_133381.1	chr16	84714980	84715180	+	1	NA	NA	NA	940	NR_029565	387173		NR_029565	ENSMUSG00000065397	Mir155	Mirn155|mir-155|mmu-mir-155	microRNA 155	ncRNA	0.020000	0.358209	
mm_83157.1	chr9	40465549	40465749	-	1	NA	NA	NA	-9885	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.030000	0.502488	28(TCATTTAAAGCG,+,0.00)
mm_51003.1	chr6	63605338	63605538	+	1	NA	NA	NA	348581	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.005000	0.288557	
mm_87800.1	chr10	60300081	60300281	+	1	NA	NA	NA	15720	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.015000	0.522388	
mm_145637.1	chr18	61114731	61114931	+	1	NA	NA	NA	-2637	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.015000	0.512438	
mm_47805.1	chr5	132543271	132543471	-	1	NA	NA	NA	-1028	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.135000	0.731343	
mm_164277.1	chr15	102009034	102009234	-	1	NA	NA	NA	-4792	NM_031170	16691	Mm.358618	NM_031170	ENSMUSG00000049382	Krt8	AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8	keratin 8	protein-coding	0.020000	0.527363	-57(GCTTTTATGGCT,+,0.00)
mm_111948.1	chr12	109073301	109073501	-	1	NA	NA	NA	-5184	NM_001163175	380785	Mm.342085	NM_001163175	ENSMUSG00000040867	Begain	BM948371|Gm897	brain-enriched guanylate kinase-associated	protein-coding	0.065000	0.572139	
mm_58477.1	chr7	3423492	3423692	+	1	NA	NA	NA	-147	NR_126426	70230	Mm.458356	NR_126426	ENSMUSG00000107585	3300002P13Rik	-	RIKEN cDNA 3300002P13 gene	ncRNA	0.090000	0.641791	
mm_135554.1	chr16	49855205	49855405	-	1	NA	NA	NA	-349	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.080000	0.686567	
mm_156804.1	chrX	163909107	163909307	+	1	NA	NA	NA	190	NM_001290379	108012	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	0.110000	0.746269	
mm_92848.1	chr10	81524017	81524217	-	1	NA	NA	NA	108	NM_010304	14676	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.030000	0.681592	
mm_10742.1	chr2	23069319	23069519	+	1	NA	NA	NA	347	NM_001102438	74159	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.040000	0.567164	
mm_129196.1	chr15	76507623	76507823	-	1	NA	NA	NA	4095	NM_010046	13350	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	0.000000	0.353234	
mm_6140.1	chr1	64737646	64737846	-	1	NA	NA	NA	4	NM_001042659	14367	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0.115000	0.776119	
mm_53942.1	chr6	5178188	5178388	-	1	NA	NA	NA	15658	NM_011134	18979	Mm.237657	NM_011134	ENSMUSG00000002588	Pon1	Pon	paraoxonase 1	protein-coding	0.025000	0.457711	55(ACCTATTAAAGC,-,0.00)
mm_111028.1	chr12	79134437	79134637	-	1	NA	NA	NA	3749	NM_009705	11847	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.015000	0.378109	
mm_158777.1	chrX	167101968	167102168	-	1	NA	NA	NA	-31698	NM_001101606	667794	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	0.010000	0.492537	
mm_52103.1	chr6	97875854	97876054	+	1	NA	NA	NA	-53863	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.000000	0.467662	
mm_95640.1	chr11	53719897	53720097	+	1	NA	NA	NA	-797	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.000000	0.393035	
mm_137499.1	chr17	26972159	26972359	+	1	NA	NA	NA	-920	NM_001005916	474156	Mm.328890	NM_001005916	ENSMUSG00000079605	Zbtb9	3930402F13Rik	zinc finger and BTB domain containing 9	protein-coding	0.005000	0.517413	
mm_83623.1	chr9	48836090	48836290	-	1	NA	NA	NA	-245	NM_001033324	235320	Mm.457803	NM_001033324	ENSMUSG00000066687	Zbtb16	AI467657|PLZF|Zfp145|lu	zinc finger and BTB domain containing 16	protein-coding	0.105000	0.676617	
mm_129663.1	chr15	81190610	81190810	-	1	NA	NA	NA	47	NM_001082536	223701	Mm.439814	NM_153049	ENSMUSG00000042292	Mkl1	AMKL|Bsac|Mal|Mrtf-A	MKL (megakaryoblastic leukemia)/myocardin-like 1	protein-coding	0.115000	0.741294	
mm_38148.1	chr4	134897141	134897341	-	1	NA	NA	NA	17675	NM_027935	71817	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0.015000	0.482587	
mm_71703.1	chr8	61927988	61928188	+	1	NA	NA	NA	1	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.030000	0.457711	-1(ACTTATAAAAGG,-,0.00)
mm_4757.1	chr1	182300866	182301066	+	1	NA	NA	NA	132	NR_015458	67330	Mm.331019	NR_015458	ENSMUSG00000100147	1700047M11Rik	-	RIKEN cDNA 1700047M11 gene	ncRNA	0.035000	0.547264	
mm_119298.1	chr14	34694199	34694399	+	1	NA	NA	NA	20371	NM_001301330	218914	Mm.27957	NM_001004436	ENSMUSG00000041408	Wapl	A530089A20Rik|BC037674|DIF-2|FOE|Wapal	WAPL cohesin release factor	protein-coding	0.000000	0.447761	
mm_156754.1	chrX	160404374	160404574	+	1	NA	NA	NA	13784	NM_001290445	237175	Mm.213016	NM_178712	ENSMUSG00000031298	Adgrg2	AW212196|B830041D06Rik|Gpr64|Me6	adhesion G protein-coupled receptor G2	protein-coding	0.000000	0.298507	
mm_66387.1	chr7	44055666	44055866	-	1	NA	NA	NA	3476	NM_020268	16619	Mm.445911	NM_020268	ENSMUSG00000063177	Klk1b27	Gk27|Klk21l|Klk27|mGK-27	kallikrein 1-related peptidase b27	protein-coding	0.020000	0.577114	
mm_3555.1	chr1	150423428	150423628	+	1	NA	NA	NA	-30473	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.020000	0.402985	
mm_162045.1	chr19	60889739	60889939	+	1	NA	NA	NA	90	NM_018869	14773	Mm.279400	NM_018869	ENSMUSG00000003228	Grk5	Gprk5	G protein-coupled receptor kinase 5	protein-coding	0.100000	0.686567	
mm_95764.1	chr11	54907072	54907272	+	1	NA	NA	NA	4318	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.020000	0.482587	28(TTCCTTTTAAGC,-,0.00),30(CCTTTTAAGCAG,+,0.00)
mm_119039.1	chr14	30565521	30565721	+	1	NA	NA	NA	-6528	NR_037237	100526475		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0.045000	0.597015	84(CTCCTTTAAAGC,-,0.00),85(TCCTTTAAAGCA,+,0.00),86(CCTTTAAAGCAA,+,0.00)
mm_19157.1	chr2	80717893	80718093	-	1	NA	NA	NA	78729	NM_001190179	69482	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	0.000000	0.427861	
mm_53229.1	chr6	127153161	127153361	+	1	NA	NA	NA	-2213	NM_009829	12444	Mm.333406	NM_009829	ENSMUSG00000000184	Ccnd2	2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2	cyclin D2	protein-coding	0.065000	0.626866	
mm_90155.1	chr10	118440947	118441147	+	1	NA	NA	NA	1	NM_008337	15978	Mm.240327	NM_008337	ENSMUSG00000055170	Ifng	IFN-g|Ifg	interferon gamma	protein-coding	0.025000	0.457711	
mm_97973.1	chr11	83859225	83859425	+	1	NA	NA	NA	6365	NM_001291269	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.015000	0.482587	
mm_39547.1	chr5	21645905	21646105	+	1	NA	NA	NA	21	NM_026034	67211	Mm.260782	NM_026034	ENSMUSG00000038525	Armc10	2810037C14Rik|Svh	armadillo repeat containing 10	protein-coding	0.045000	0.651741	
mm_60058.1	chr7	31155584	31155784	+	1	NA	NA	NA	-4634	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.000000	0.527363	
mm_97032.1	chr11	72266374	72266574	+	1	NA	NA	NA	130	NM_001004148	237831	Mm.340778	NM_001004148	ENSMUSG00000020805	Slc13a5	Indy|NaC2/NaCT|Nact|mINDY	solute carrier family 13 (sodium-dependent citrate transporter), member 5	protein-coding	0.075000	0.552239	
mm_50419.1	chr6	48768659	48768859	+	1	NA	NA	NA	2092	NM_031247	83408	Mm.333050	NM_031247	ENSMUSG00000039264	Gimap3	2010110D23Rik|Gimap5|Ian4	GTPase, IMAP family member 3	protein-coding	0.010000	0.542289	
mm_108130.1	chr12	76071954	76072154	+	1	NA	NA	NA	105205	NM_010157	13983	Mm.2561	NM_010157	ENSMUSG00000021055	Esr2	ER[b]|ERbeta|Estrb	estrogen receptor 2 (beta)	protein-coding	0.020000	0.542289	60(GCATTTAAATGC,+,0.00),60(GCATTTAAATGC,-,0.00)
mm_12591.1	chr2	73764768	73764968	+	1	NA	NA	NA	10478	NM_001166603	108699	Mm.257073	NM_029716	ENSMUSG00000056486	Chn1	0610007I19Rik|0710001E19Rik|1700112L09Rik|2900046J01Rik|AI413815|ARHGAP2	chimerin 1	protein-coding	0.015000	0.562189	
mm_160178.1	chr7	45694065	45694265	-	1	NA	NA	NA	237	NM_001271578	56546	Mm.56914	NM_019934	ENSMUSG00000040364	Sec1	Fut10|Fut3	secretory blood group 1	protein-coding	0.105000	0.691542	
mm_92116.1	chr10	63243553	63243753	-	1	NA	NA	NA	-144	NM_030114	67345	Mm.234437	NM_026101	ENSMUSG00000020064	Herc4	1700056O17Rik|4921531D01Rik|9530080M15Rik|mKIAA1593	hect domain and RLD 4	protein-coding	0.065000	0.552239	
mm_54546.1	chr6	36809948	36810148	-	1	NA	NA	NA	1313	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.035000	0.582090	
mm_113857.1	chr13	47246844	47247044	+	1	NA	NA	NA	52941	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.025000	0.393035	-63(TTTTATAAAAGC,-,0.00)
mm_163132.1	chr11	78772715	78772915	+	1	NA	NA	NA	-21086	NM_197989	69109	Mm.341420	NM_197989	ENSMUSG00000049489	Fam58b	1810009O10Rik|Fam58a	family with sequence similarity 58, member B	protein-coding	0.000000	0.517413	
mm_160506.1	chr9	20171317	20171517	-	1	NA	NA	NA	152	NM_146904	57251	Mm.377130	NM_146904	ENSMUSG00000066899	Olfr870	MOR141-1|Olfr72	olfactory receptor 870	protein-coding	0.010000	0.442786	
mm_64277.1	chr7	141808533	141808733	+	1	NA	NA	NA	19622	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.000000	0.517413	
mm_15659.1	chr2	163225357	163225557	+	1	NA	NA	NA	3	NM_001098799	269389	Mm.207709	NM_001098799	ENSMUSG00000074607	Tox2	AI851523|AV026525|BI987407|Gcx1|RxHMG1	TOX high mobility group box family member 2	protein-coding	0.050000	0.572139	-38(GCTTATAAAGCT,+,0.00)
mm_127491.1	chr15	101364665	101364865	+	1	NA	NA	NA	-4587	NR_035462	100316694		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0.005000	0.557214	
mm_6615.1	chr1	75506267	75506467	-	1	NA	NA	NA	85	NM_178884	98733	Mm.236454	NM_178884	ENSMUSG00000026211	Obsl1	AW822216	obscurin-like 1	protein-coding	0.090000	0.726368	
mm_170533.1	chr19	38325892	38326092	-	1	NA	NA	NA	61210	NM_020278	56839	Mm.298251	NM_020278	ENSMUSG00000067242	Lgi1	BB130740	leucine-rich repeat LGI family, member 1	protein-coding	0.020000	0.492537	-2(CCTTTTAGAATG,+,0.00)
mm_26541.1	chr3	146149763	146149963	+	1	NA	NA	NA	30	NM_026656	68279	Mm.116862	NM_026656	ENSMUSG00000011008	Mcoln2	3300002C04Rik|AI549968|C86638|TRPML2	mucolipin 2	protein-coding	0.085000	0.666667	-32(CCCTTTATAAGG,+,0.00),-32(CCCTTTATAAGG,-,0.00),-30(CTTTATAAGGGC,+,0.00)
mm_37656.1	chr4	128947626	128947826	-	1	NA	NA	NA	14729	NM_172875	242669	Mm.215814	NM_172875	ENSMUSG00000028789	Azin2	4933429I20Rik|Adc|Azi2|B930082O19|ODC-p|Odcp	antizyme inhibitor 2	protein-coding	0.040000	0.552239	
mm_67269.1	chr7	75780651	75780851	-	1	NA	NA	NA	-67587	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.020000	0.582090	
mm_60275.1	chr7	43931576	43931776	+	1	NA	NA	NA	-2095	NM_174865	317652	Mm.389896	NM_174865	ENSMUSG00000055193	Klk15	-	kallikrein related-peptidase 15	protein-coding	0.020000	0.611940	-34(GCTTATAAAAGC,+,0.00),-34(GCTTATAAAAGC,-,0.00)
mm_20629.1	chr2	131993495	131993695	-	1	NA	NA	NA	36393	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.030000	0.552239	
mm_159523.1	chr4	61595726	61595926	-	1	NA	NA	NA	-1	NM_001134644	100048885	Mm.422695	NM_001134644		Gm2083	-	major urinary protein LOC100048885	protein-coding	0.020000	0.452736	-34(GAGTATATAAGG,-,0.00)
mm_163678.1	chr13	91374780	91374980	+	1	NA	NA	NA	13205	NR_045161	320297	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0.005000	0.402985	
mm_5973.1	chr1	57406377	57406577	-	1	NA	NA	NA	-71	NM_001081181	68115	Mm.275428	NM_001081181	ENSMUSG00000025971	Maip1	9430016H08Rik|AA409999|C78988	matrix AAA peptidase interacting protein 1	protein-coding	0.070000	0.592040	
mm_10118.1	chr2	3730877	3731077	+	1	NA	NA	NA	17519	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.030000	0.527363	54(TCCTTTATAAGG,-,0.00),56(CTTTATAAGGCG,+,0.00)
mm_156209.1	chrX	134601177	134601377	+	1	NA	NA	NA	98	NM_001313717	56258	Mm.315909	NM_019868	ENSMUSG00000045427	Hnrnph2	DXHXS1271E|Ftp-3|Ftp3|H'|HNRNP|Hnrph2	heterogeneous nuclear ribonucleoprotein H2	protein-coding	0.080000	0.542289	
mm_57870.1	chr6	129678749	129678949	-	1	NA	NA	NA	124	NM_001288664	16641	Mm.56899	NM_010652	ENSMUSG00000030167	Klrc1	CD159a|NKG2A|NKG2B	killer cell lectin-like receptor subfamily C, member 1	protein-coding	0.025000	0.487562	
mm_126513.1	chr15	81811417	81811617	+	1	NA	NA	NA	103	NM_017376	21685	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.140000	0.761194	
mm_146351.1	chr18	82561637	82561837	+	1	NA	NA	NA	7229	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.040000	0.636816	
mm_78297.1	chr9	22411487	22411687	+	1	NA	NA	NA	10	NM_026739	68283	Mm.280669	NM_026739	ENSMUSG00000036411	9530077C05Rik	1110003N12Rik|Kiaa0895|mKIAA0895	RIKEN cDNA 9530077C05 gene	protein-coding	0.080000	0.616915	
mm_58091.1	chr6	137505334	137505534	-	1	NA	NA	NA	14461	NM_001271589	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.025000	0.522388	
mm_75221.1	chr8	39607453	39607653	-	1	NA	NA	NA	35125	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.010000	0.368159	
mm_169451.1	chr1	46076055	46076255	-	1	NA	NA	NA	9417	NM_001160386	227058	Mm.296880	NM_001160386	ENSMUSG00000041144	Dnah7b	Dnahc7b|Gm107	dynein, axonemal, heavy chain 7B	protein-coding	0.035000	0.393035	
mm_45058.1	chr5	41821350	41821550	-	1	NA	NA	NA	22865	NM_001310601	665775	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0.020000	0.422886	-99(CACTATAAAAAC,-,0.00)
mm_44218.1	chr5	4757886	4758086	-	1	NA	NA	NA	230	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.085000	0.691542	
mm_35388.1	chr4	33289998	33290198	-	1	NA	NA	NA	-20213	NM_011884	24018	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.010000	0.422886	
mm_12247.1	chr2	68877860	68878060	+	1	NA	NA	NA	16519	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.010000	0.278607	
mm_142385.1	chr17	44814389	44814589	-	1	NA	NA	NA	138	NM_009820	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.025000	0.467662	-57(GCGTTTAAATGG,-,0.00)
mm_157289.1	chrX	20861354	20861554	-	1	NA	NA	NA	1728	NR_049190	100885829		NR_049190	ENSMUSG00000093408	Mir5617	Gm25192|mir-5617|mmu-mir-5617	microRNA 5617	ncRNA	0.020000	0.562189	
mm_137616.1	chr17	28272080	28272280	+	1	NA	NA	NA	472	NR_045427	69050	Mm.486938	NR_045427	ENSMUSG00000002250	1810013A23Rik	-	RIKEN cDNA 1810013A23 gene	ncRNA	0.035000	0.636816	
mm_58729.1	chr7	13029596	13029796	+	1	NA	NA	NA	5081	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.020000	0.507463	
mm_81305.1	chr9	108340207	108340407	+	1	NA	NA	NA	1227	NM_001329528	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.015000	0.442786	
mm_159831.1	chr5	125387967	125388167	-	1	NA	NA	NA	1950	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.015000	0.582090	
mm_166836.1	chr7	19271655	19271855	-	1	NA	NA	NA	99	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.090000	0.631841	
mm_46529.1	chr5	105650969	105651169	-	1	NA	NA	NA	-48900	NM_001122768	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.005000	0.358209	
mm_113978.1	chr13	51846578	51846778	+	1	NA	NA	NA	3	NM_011817	23882	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.095000	0.646766	-33(GTCTATAAAAGG,-,0.00)
mm_138766.1	chr17	37057071	37057271	+	1	NA	NA	NA	11205	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.020000	0.467662	
mm_154099.1	chr19	57008453	57008653	-	1	NA	NA	NA	22	NM_146102	226250	Mm.226284	NM_146102	ENSMUSG00000025083	Afap1l2	AU041783|C86904|mKIAA1914	actin filament associated protein 1-like 2	protein-coding	0.075000	0.631841	
mm_42755.1	chr5	120847278	120847478	+	1	NA	NA	NA	11	NM_145153	243262	Mm.105369	NM_145153	ENSMUSG00000053765	Oas1f	-	2'-5' oligoadenylate synthetase 1F	protein-coding	0.020000	0.507463	5(GGCCATAAAATG,-,0.00)
mm_67036.1	chr7	67044219	67044419	-	1	NA	NA	NA	178139	NR_131044	76628	Mm.384589	NR_131043	ENSMUSG00000097527	1700112J16Rik	-	RIKEN cDNA 1700112J16 gene	ncRNA	0.035000	0.512438	
mm_121358.1	chr14	117063031	117063231	+	1	NA	NA	NA	137834	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.010000	0.343284	
mm_134798.1	chr16	24296080	24296280	-	1	NA	NA	NA	-97170	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.000000	0.492537	
mm_7563.1	chr1	124756220	124756420	-	1	NA	NA	NA	679407	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.000000	0.447761	
mm_62039.1	chr7	92234855	92235055	+	1	NA	NA	NA	-15	NM_001243047	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.010000	0.457711	
mm_13555.1	chr2	112261866	112262066	+	1	NA	NA	NA	40	NM_025403	66181	Mm.272346	NM_025403	ENSMUSG00000027133	Nop10	1110036B12Rik|NOP10P|Nola3	NOP10 ribonucleoprotein	protein-coding	0.075000	0.517413	
mm_39087.1	chr4	154636677	154636877	-	1	NA	NA	NA	96	NM_001177995	70673	Mm.257785	NM_027504	ENSMUSG00000039410	Prdm16	5730557K01Rik|csp1|mel1	PR domain containing 16	protein-coding	0.095000	0.611940	
mm_47187.1	chr5	120754005	120754205	-	1	NA	NA	NA	-4257	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.005000	0.383085	
mm_85873.1	chr9	110920739	110920939	-	1	NA	NA	NA	-3978	NM_001195437	235634	Mm.31788	NM_001195437	ENSMUSG00000096393	Gm590	-	predicted gene 590	protein-coding	0.015000	0.482587	
mm_127915.1	chr15	9530060	9530260	-	1	NA	NA	NA	-284	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.010000	0.467662	
mm_124122.1	chr14	79642046	79642246	-	1	NA	NA	NA	20037	NM_001310655	16840	Mm.46561	NM_010701	ENSMUSG00000022025	Cnmd	Bricd3|ChM-I|Chmd|Lect1	chondromodulin	protein-coding	0.035000	0.412935	
mm_145562.1	chr18	60812291	60812491	+	1	NA	NA	NA	315	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.025000	0.537313	
mm_27523.1	chr3	57301850	57302050	-	1	NA	NA	NA	-31	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	0.005000	0.437811	-34(TGCTTTATGAGG,-,0.00)
mm_68765.1	chr7	121840980	121841180	-	1	NA	NA	NA	-23958	NM_001272023	20277	Mm.7709	NM_011325	ENSMUSG00000030873	Scnn1b	-	sodium channel, nonvoltage-gated 1 beta	protein-coding	0.025000	0.527363	
mm_42677.1	chr5	119680913	119681113	+	1	NA	NA	NA	9780	NM_011535	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.055000	0.671642	
mm_105614.1	chr11	106787962	106788162	-	1	NA	NA	NA	432	NM_007840	13207	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0.100000	0.562189	
mm_147465.1	chr18	46673370	46673570	-	1	NA	NA	NA	54872	NM_033037	12583	Mm.241056	NM_033037	ENSMUSG00000033022	Cdo1	1300002L19Rik|Cdo|D18Ucla3	cysteine dioxygenase 1, cytosolic	protein-coding	0.010000	0.402985	-34(CTCTATAAAAGT,-,0.00)
mm_11865.1	chr2	48949434	48949634	+	1	NA	NA	NA	26	NM_029924	109241	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630|OTTMUSG00000012483	methyl-CpG binding domain protein 5	protein-coding	0.045000	0.641791	
mm_167918.1	chrX	100796501	100796701	+	1	NA	NA	NA	19330	NM_001177780	53310	Mm.4615	NM_016747	ENSMUSG00000000881	Dlg3	Dlgh3|SAP102|mKIAA1232	discs, large homolog 3 (Drosophila)	protein-coding	0.015000	0.522388	
mm_130213.1	chr15	95654603	95654803	-	1	NA	NA	NA	68	NM_207533	223843	Mm.152937	NM_207533	ENSMUSG00000045608	Dbx2	9430056A22Rik|9630005K15|AI846217|Gm1229	developing brain homeobox 2	protein-coding	0.060000	0.626866	
mm_117329.1	chr13	68582017	68582217	-	1	NA	NA	NA	-13	NM_001308475	210009	Mm.205514	NM_172480	ENSMUSG00000034617	Mtrr	4732420G08|MSR	5-methyltetrahydrofolate-homocysteine methyltransferase reductase	protein-coding	0.150000	0.716418	
mm_107406.1	chr12	33394970	33395170	+	1	NA	NA	NA	216	NM_029152	75040	Mm.156068	NM_029152	ENSMUSG00000020562	Efcab10	4930504H06Rik	EF-hand calcium binding domain 10	protein-coding	0.035000	0.572139	
mm_85500.1	chr9	106159805	106160005	-	1	NA	NA	NA	-1767	NM_174846	235582	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	0.060000	0.577114	
mm_7345.1	chr1	105990003	105990203	-	1	NA	NA	NA	-303	NM_001122676	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.090000	0.631841	
mm_96683.1	chr11	69580274	69580474	+	1	NA	NA	NA	15	NM_001127233	22059	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.030000	0.562189	
mm_86431.1	chr10	3863702	3863902	+	1	NA	NA	NA	-8865	NM_001033253	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.030000	0.497512	
mm_138089.1	chr17	34031704	34031904	+	1	NA	NA	NA	-8	NM_011306	20182	Mm.1243	NM_011306	ENSMUSG00000039656	Rxrb	AL023085|H-2RIIBP|Nr2b2|RCoR-1|Rub	retinoid X receptor beta	protein-coding	0.125000	0.706468	
mm_122525.1	chr14	47378647	47378847	-	1	NA	NA	NA	4887	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.015000	0.398010	
mm_170540.1	chr19	39821630	39821830	+	1	NA	NA	NA	-8916	NM_010004	13099	Mm.353875	NM_010004	ENSMUSG00000025004	Cyp2c40	AI265721|AI662255	cytochrome P450, family 2, subfamily c, polypeptide 40	protein-coding	0.000000	0.497512	
mm_32995.1	chr4	120450311	120450511	+	1	NA	NA	NA	45130	NM_013883	29871	Mm.427014	NM_013883	ENSMUSG00000000085	Scmh1	AI315320|AI851618|Scml1|Scml3	sex comb on midleg homolog 1	protein-coding	0.000000	0.373134	
mm_84578.1	chr9	69349640	69349840	-	1	NA	NA	NA	14507	NR_136934	102642202	Mm.415363	NR_136934	ENSMUSG00000086648	Gm15511	OTTMUSG00000023029	predicted gene 15511	ncRNA	0.000000	0.442786	-50(GCCTTTTTAAAA,-,0.00),-48(CTTTTTAAAAAG,+,0.00),-48(CTTTTTAAAAAG,-,0.00)
mm_6231.1	chr1	66937501	66937701	-	1	NA	NA	NA	-2235	NM_001113387	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.010000	0.422886	
mm_38062.1	chr4	134018711	134018911	-	1	NA	NA	NA	5	NM_145833	83557	Mm.302567	NM_145833	ENSMUSG00000050966	Lin28a	AL024421|ENSMUSG00000070700|Gm10299|Lin-28|Lin28|Tex17|lin-28A	lin-28 homolog A (C. elegans)	protein-coding	0.055000	0.621891	
mm_41938.1	chr5	105718578	105718778	+	1	NA	NA	NA	17868	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.005000	0.487562	
mm_171499.1	chr4	146224715	146224915	-	1	NA	NA	NA	-45570	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.035000	0.442786	
mm_93998.1	chr10	127563780	127563980	-	1	NA	NA	NA	-29321	NM_183297	104080	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.015000	0.611940	
mm_128653.1	chr15	59652737	59652937	-	1	NA	NA	NA	4183	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.030000	0.482587	
mm_30608.1	chr4	6453402	6453602	+	1	NA	NA	NA	769	NM_010945	18201	Mm.3059	NM_010945	ENSMUSG00000028245	Nsmaf	AA959567|C630007J05|Fan	neutral sphingomyelinase (N-SMase) activation associated factor	protein-coding	0.045000	0.547264	
mm_36085.1	chr4	58206592	58206792	-	1	NA	NA	NA	-96	NM_022814	64817	Mm.261024	NM_022814	ENSMUSG00000028369	Svep1	1110021D17Rik|4833413O10Rik|AA387071|D430029O09Rik|Polydom	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	protein-coding	0.010000	0.512438	51(CATTTTATAGGC,+,0.00)
mm_4874.1	chr1	187843215	187843415	+	1	NA	NA	NA	-154512	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.015000	0.507463	
mm_139864.1	chr17	70521664	70521864	+	1	NA	NA	NA	-130	NM_001347414	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.000000	0.412935	16(GCATTTATGGCA,+,0.00)
mm_156383.1	chrX	139672254	139672454	+	1	NA	NA	NA	-12642	NM_001081499	245638	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	0.010000	0.318408	
mm_82575.1	chr9	21131101	21131301	-	1	NA	NA	NA	74	NM_018793	54721	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.065000	0.651741	
mm_139523.1	chr17	56628033	56628233	+	1	NA	NA	NA	-10	NM_175350	106757	Mm.23401	NM_175350	ENSMUSG00000040828	Catsperd	4921529N20Rik|4933402B14Rik|619718|AW045609|Gm6095|Tmem146	catsper channel auxiliary subunit delta	protein-coding	0.035000	0.567164	
mm_37263.1	chr4	118457387	118457587	-	1	NA	NA	NA	26	NM_001285496	17480	Mm.4864	NM_010823	ENSMUSG00000006389	Mpl	CD110|TPO-R|c-mpl|hlb219	myeloproliferative leukemia virus oncogene	protein-coding	0.015000	0.636816	
mm_149776.1	chr19	23096772	23096972	+	1	NA	NA	NA	-44354	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.005000	0.532338	
mm_81147.1	chr9	106886329	106886529	+	1	NA	NA	NA	571	NM_175402	109095	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	0.105000	0.696517	
mm_24625.1	chr3	93555017	93555217	+	1	NA	NA	NA	0	NM_009112	20194	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	0.080000	0.706468	
mm_121711.1	chr14	16172377	16172577	-	1	NA	NA	NA	-76837	NM_021504	59007	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	0.005000	0.502488	
mm_35662.1	chr4	43562093	43562293	-	1	NA	NA	NA	390	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.115000	0.741294	
mm_43309.1	chr5	134755361	134755561	+	1	NA	NA	NA	-8138	NM_007925	13717	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	0.020000	0.542289	
mm_52945.1	chr6	122952591	122952791	+	1	NA	NA	NA	47	NM_153197	73149	Mm.25684	NM_153197	ENSMUSG00000043832	Clec4a3	3110037K17Rik|Dcir3	C-type lectin domain family 4, member a3	protein-coding	0.020000	0.477612	
mm_148066.1	chr18	72327698	72327898	-	1	NA	NA	NA	23271	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.005000	0.348259	
mm_39028.1	chr4	152138689	152138889	-	1	NA	NA	NA	-2464	NM_207690	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.085000	0.686567	
mm_73648.1	chr8	110919855	110920055	+	1	NA	NA	NA	90	NM_009179	20444	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	0.120000	0.781095	
mm_168071.1	chr10	105880910	105881110	+	1	NA	NA	NA	39531	NM_025602	52713	Mm.339224	NM_025602	ENSMUSG00000019897	Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding	0.025000	0.517413	
mm_158861.1	chrY	1010500	1010700	+	1	NA	NA	NA	-12	NM_012011	26908	Mm.250909	NM_012011	ENSMUSG00000069049	Eif2s3y	Eif-2gy|Spy|Tfy	eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked	protein-coding	0.065000	0.557214	
mm_101170.1	chr11	16981791	16981991	-	1	NA	NA	NA	26827	NM_019549	56193	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.010000	0.447761	
mm_106716.1	chr12	3834757	3834957	+	1	NA	NA	NA	27387	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.005000	0.567164	12(GGCTCTTAGAGG,-,0.00)
mm_50441.1	chr6	48872778	48872978	+	1	NA	NA	NA	-22377	NM_029638	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.015000	0.467662	
mm_157748.1	chrX	73458863	73459063	-	1	NA	NA	NA	66	NM_028633	73738	Mm.264899	NM_028633	ENSMUSG00000031371	Haus7	1110020L19Rik|Uchl5ip|Uip1	HAUS augmin-like complex, subunit 7	protein-coding	0.070000	0.606965	
mm_104711.1	chr11	98043504	98043704	-	1	NA	NA	NA	9858	NM_146028	217154	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0.025000	0.626866	
mm_13897.1	chr2	120450803	120451003	+	1	NA	NA	NA	-12690	NM_001177799	12335	Mm.458021	NM_007601	ENSMUSG00000079110	Capn3	AI323605|Capa-3|Capa3|Lp82|p94	calpain 3	protein-coding	0.025000	0.502488	
mm_17859.1	chr2	34799758	34799958	-	1	NA	NA	NA	54	NM_145522	227746	Mm.158705	NM_145522	ENSMUSG00000070953	Rabepk	8430412M01Rik|9530020D24Rik|AV073337|C87311|Rab9p40	Rab9 effector protein with kelch motifs	protein-coding	0.090000	0.651741	
mm_159481.1	chr4	35845101	35845301	-	1	NA	NA	NA	3	NM_001166001	242384	Mm.132507	NM_175516	ENSMUSG00000045083	Lingo2	B230217C06Rik|Lern3|Lrrn6c	leucine rich repeat and Ig domain containing 2	protein-coding	0.020000	0.502488	
mm_112059.1	chr12	111909034	111909234	-	1	NA	NA	NA	-1079	NM_011625	21981	Mm.313076	NM_011625	ENSMUSG00000021285	Ppp1r13b	AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85	protein phosphatase 1, regulatory (inhibitor) subunit 13B	protein-coding	0.010000	0.542289	
mm_61043.1	chr7	49759485	49759685	+	1	NA	NA	NA	73	NM_001146052	53415	Mm.20801	NM_016865	ENSMUSG00000039745	Htatip2	AW111545|Cc3|Tip30	HIV-1 Tat interactive protein 2	protein-coding	0.035000	0.532338	
mm_34483.1	chr4	148496392	148496592	+	1	NA	NA	NA	3970	NM_001039554	654812	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	0.040000	0.587065	
mm_87697.1	chr10	59702536	59702736	+	1	NA	NA	NA	73	NM_001291443	216001	Mm.27199	NM_144822	ENSMUSG00000020111	Micu1	C730016L05Rik|Calc|Cbara1	mitochondrial calcium uptake 1	protein-coding	0.075000	0.616915	
mm_43872.1	chr5	143622350	143622550	+	1	NA	NA	NA	3	NM_011182	19159	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0.115000	0.716418	
mm_74901.1	chr8	25201470	25201670	-	1	NA	NA	NA	-28	NM_177089	320165	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.175000	0.815920	
mm_157972.1	chrX	93831799	93831999	-	1	NA	NA	NA	196	NM_145630	236900	Mm.12775	NM_145630	ENSMUSG00000035232	Pdk3	2610001M10Rik|AI035637	pyruvate dehydrogenase kinase, isoenzyme 3	protein-coding	0.075000	0.626866	
mm_125114.1	chr15	28203634	28203834	+	1	NA	NA	NA	-32	NM_133365	110082	Mm.248464	NM_133365	ENSMUSG00000022262	Dnah5	AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b601Clo|mKIAA1603	dynein, axonemal, heavy chain 5	protein-coding	0.035000	0.467662	
mm_47735.1	chr5	130172501	130172701	-	1	NA	NA	NA	782	NM_001199059	56715	Mm.288639	NM_019983	ENSMUSG00000025340	Rabgef1	Rab5ef|Rabex5|Rin2	RAB guanine nucleotide exchange factor (GEF) 1	protein-coding	0.010000	0.517413	
mm_136362.1	chr16	92789250	92789450	-	1	NA	NA	NA	36724	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.005000	0.393035	
mm_58774.1	chr7	16046510	16046710	+	1	NA	NA	NA	-25235	NM_001347559	666528	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.085000	0.686567	
mm_115684.1	chr13	13537563	13537763	-	1	NA	NA	NA	-52746	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.000000	0.402985	45(CATTTTAAAAGG,-,0.00)
mm_140424.1	chr17	87984432	87984632	+	1	NA	NA	NA	9482	NM_010830	17688	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.030000	0.492537	
mm_163319.1	chr12	7977596	7977796	+	1	NA	NA	NA	19	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.025000	0.601990	-82(TCCTATAAATGG,-,0.00)
mm_89077.1	chr10	83338588	83338788	+	1	NA	NA	NA	-871	NM_177388	338365	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.020000	0.417910	-6(TTTTTTAAACCC,+,0.00)
mm_101532.1	chr11	33203473	33203673	-	1	NA	NA	NA	15	NM_019916	27140	Mm.25362	NM_019916	ENSMUSG00000040610	Tlx3	Hox11l2|Rnx|Tlx1l2	T cell leukemia, homeobox 3	protein-coding	0.085000	0.646766	
mm_10792.1	chr2	24349362	24349562	+	1	NA	NA	NA	4091	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.020000	0.502488	
mm_38131.1	chr4	134703269	134703469	-	1	NA	NA	NA	921	NM_207237	230815	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.080000	0.661692	
mm_78941.1	chr9	45138218	45138418	+	1	NA	NA	NA	-724	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.090000	0.631841	-18(CAGCCTAAAAGC,-,0.00)
mm_135340.1	chr16	42340513	42340713	-	1	NA	NA	NA	38	NM_008083	14432	Mm.1222	NM_008083	ENSMUSG00000047261	Gap43	B-50|Basp2|GAP-43	growth associated protein 43	protein-coding	0.030000	0.597015	
mm_171816.1	chr5	138160971	138161171	+	1	NA	NA	NA	-31	NM_012002	26893	Mm.3981	NM_012002	ENSMUSG00000019494	Cops6	Sgn3|VIP/MOV34	COP9 signalosome subunit 6	protein-coding	0.090000	0.666667	
mm_85054.1	chr9	90114693	90114893	-	1	NA	NA	NA	27	NM_001039147	21761	Mm.426209	NM_024431	ENSMUSG00000062270	Morf4l1	MORFRG15|MRG15|TEG-189|Tex189|mKIAA4002	mortality factor 4 like 1	protein-coding	0.115000	0.716418	
mm_83194.1	chr9	41014250	41014450	-	1	NA	NA	NA	-9722	NM_019465	54698	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	0.020000	0.517413	
mm_73204.1	chr8	95678176	95678376	+	1	NA	NA	NA	-24761	NM_001195006	234593	Mm.29846	NM_145602	ENSMUSG00000036564	Ndrg4	D8Bwg1337e|Ndr1-rs|Ndr4|R74996|SMAP-8	N-myc downstream regulated gene 4	protein-coding	0.110000	0.696517	-71(TTTTTTAAACCC,+,0.00)
mm_107973.1	chr12	72939644	72939844	+	1	NA	NA	NA	-138	NM_011384	20476	Mm.57138	NM_011384	ENSMUSG00000021099	Six6	Optx2|Six9	sine oculis-related homeobox 6	protein-coding	0.065000	0.611940	
mm_168085.1	chr10	12445180	12445380	+	1	NA	NA	NA	416455	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.005000	0.368159	
mm_114504.1	chr13	70574410	70574610	+	1	NA	NA	NA	1269	NR_045934	73584	Mm.442491	NR_045934	ENSMUSG00000101051	1700100L14Rik	-	RIKEN cDNA 1700100L14 gene	ncRNA	0.000000	0.547264	
mm_127944.1	chr15	10714525	10714725	-	1	NA	NA	NA	6	NM_001166408	75646	Mm.212395	NM_030690	ENSMUSG00000022246	Rai14	1700008J19Rik|1700020L11Rik|Ankycorbin|Norpeg|mKIAA1334	retinoic acid induced 14	protein-coding	0.095000	0.736318	
mm_87517.1	chr10	52690499	52690699	+	1	NA	NA	NA	98	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding	0.070000	0.641791	
mm_89827.1	chr10	105841383	105841583	+	1	NA	NA	NA	4	NM_025602	52713	Mm.339224	NM_025602	ENSMUSG00000019897	Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding	0.115000	0.641791	
mm_88227.1	chr10	70440791	70440991	+	1	NA	NA	NA	-19	NM_024244	71721	Mm.477813	NM_024244	ENSMUSG00000043259	Fam13c	1200015N20Rik|C030038O19Rik|mKIAA1796	family with sequence similarity 13, member C	protein-coding	0.070000	0.656716	
mm_123668.1	chr14	69247380	69247580	-	1	NA	NA	NA	37623	NM_026331	67712	Mm.293635	NM_026331	ENSMUSG00000034248	Slc25a37	1700020E22Rik|4930513O14Rik|4930526G11Rik|AI848481|C330015G08Rik|Mfrn|Mfrn1|Mscp|frascati|mitoferrin	solute carrier family 25, member 37	protein-coding	0.015000	0.606965	
mm_169917.1	chr16	57391080	57391280	-	1	NA	NA	NA	37903	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.070000	0.527363	-42(AACTTTAAATGG,-,0.00)
mm_16555.1	chr2	181837827	181838027	+	1	NA	NA	NA	73	NM_001291211	245867	Mm.491085	NM_153594	ENSMUSG00000027589	Pcmtd2	5330414D10Rik|AI314201	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 2	protein-coding	0.085000	0.611940	
mm_40555.1	chr5	58827929	58828129	+	1	NA	NA	NA	-375031	NR_046190	78163	Mm.243828	NR_046190	ENSMUSG00000105234	4930459L07Rik	-	RIKEN cDNA 4930459L07 gene	ncRNA	0.005000	0.417910	
mm_129963.1	chr15	85578045	85578245	-	1	NA	NA	NA	-75	NM_001163634	22422	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	0.075000	0.621891	-11(GCCCCTAAGAGG,-,0.00)
mm_38944.1	chr4	150201033	150201233	-	1	NA	NA	NA	2	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.015000	0.542289	-34(GCATTTAAAAGA,-,0.00)
mm_78058.1	chr9	14902582	14902782	+	1	NA	NA	NA	1269	NM_176807	64931	Mm.86738	NM_022888	ENSMUSG00000031933	Izumo1r	0910001L11Rik|C86255|Folbp3|Folr4|Juno	IZUMO1 receptor, JUNO	protein-coding	0.000000	0.502488	
mm_87586.1	chr10	56795585	56795785	+	1	NA	NA	NA	418385	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.005000	0.502488	
mm_126108.1	chr15	78250522	78250722	+	1	NA	NA	NA	5811	NM_008677	17972	Mm.2068	NM_008677	ENSMUSG00000071715	Ncf4	AI451400|p40phox	neutrophil cytosolic factor 4	protein-coding	0.005000	0.512438	
mm_159913.1	chr6	48448257	48448457	+	1	NA	NA	NA	128	NM_173428	243369	Mm.25039	NM_173428	ENSMUSG00000029797	Sspo	C79529|Scospondin	SCO-spondin	protein-coding	0.010000	0.482587	
mm_7968.1	chr1	134040294	134040494	-	1	NA	NA	NA	2879	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.020000	0.577114	
mm_129096.1	chr15	75929687	75929887	-	1	NA	NA	NA	-57	NM_031201	22122	Mm.22596	NM_031201	ENSMUSG00000022570	Tsta3	AI256181|FX|Tstap35b	tissue specific transplantation antigen P35B	protein-coding	0.055000	0.587065	
mm_102599.1	chr11	62344767	62344967	-	1	NA	NA	NA	63394	NM_029704	72795	Mm.489722	NM_028360	ENSMUSG00000042298	Ttc19	2010204O13Rik|2810460C24Rik|AI505442	tetratricopeptide repeat domain 19	protein-coding	0.020000	0.437811	-31(CTTCATAAAGGC,+,0.00),14(GGCCTTAAATAC,-,0.00),16(CCTTAAATACCC,+,0.00)
mm_93583.1	chr10	116931759	116931959	-	1	NA	NA	NA	18521	NM_001003950	216363	Mm.336394	NM_001003950	ENSMUSG00000064181	Rab3ip	B230311A06|Gtpat12|Rabin3	RAB3A interacting protein	protein-coding	0.020000	0.497512	
mm_108501.1	chr12	83949926	83950126	+	1	NA	NA	NA	-582	NM_023633	71952	Mm.251483	NM_023633	ENSMUSG00000046791	2410016O06Rik	MAPJD|NO66	RIKEN cDNA 2410016O06 gene	protein-coding	0.010000	0.462687	
mm_170794.1	chr2	175338139	175338339	-	1	NA	NA	NA	-27	NM_001099349	100043381		NM_001099349	ENSMUSG00000078880	Gm14308	OTTMUSG00000016254	predicted gene 14308	protein-coding	0.015000	0.497512	
mm_168225.1	chr10	79497137	79497337	+	1	NA	NA	NA	28279	NM_001104537	625029	Mm.469865	NM_001104537	ENSMUSG00000091381	Vmn2r83	EG625029	vomeronasal 2, receptor 83	protein-coding	0.010000	0.477612	
mm_1756.1	chr1	75521462	75521662	+	1	NA	NA	NA	33	NM_027886	71728	Mm.312650	NM_027886	ENSMUSG00000026213	Stk11ip	1200014D22Rik|BB131189|LIP1|LKB1IP	serine/threonine kinase 11 interacting protein	protein-coding	0.070000	0.592040	-9(TGCCCTAAAAGA,-,0.00)
mm_102312.1	chr11	55659032	55659232	-	1	NA	NA	NA	-50934	NM_020492	14654	Mm.89320	NM_020492	ENSMUSG00000000263	Glra1	nmf11|oscillator|ot|spasmodic|spd	glycine receptor, alpha 1 subunit	protein-coding	0.000000	0.497512	
mm_124580.1	chr14	124663554	124663754	-	1	NA	NA	NA	13473	NM_207667	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.005000	0.338308	
mm_32125.1	chr4	99037287	99037487	+	1	NA	NA	NA	6433	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.020000	0.412935	
mm_107468.1	chr12	37241935	37242135	+	1	NA	NA	NA	396	NM_178767	319660	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	0.015000	0.472637	
mm_13829.1	chr2	119288685	119288885	+	1	NA	NA	NA	43	NM_172269	228545	Mm.294761	NM_172269	ENSMUSG00000034216	Vps18	9930024E13Rik	VPS18 CORVET/HOPS core subunit	protein-coding	0.060000	0.597015	
mm_162300.1	chr1	34485221	34485421	+	1	NA	NA	NA	-13109	NM_009355	21755	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0.020000	0.447761	
mm_69831.1	chr7	141271716	141271916	-	1	NA	NA	NA	4970	NM_028069	72040	Mm.29080	NM_028069	ENSMUSG00000025497	Cdhr5	1810074H01Rik|AI481143|Mucdhl|Mupcdh	cadherin-related family member 5	protein-coding	0.000000	0.606965	
mm_158376.1	chrX	135210586	135210786	-	1	NA	NA	NA	1	NM_025355	66104	Mm.336239	NM_025355	ENSMUSG00000031409	Tceal6	1500026B10Rik	transcription elongation factor A (SII)-like 6	protein-coding	0.045000	0.606965	
mm_107666.1	chr12	53149112	53149312	+	1	NA	NA	NA	-99465	NM_013780	27386	Mm.247044	NM_013780	ENSMUSG00000021010	Npas3	4930423H22Rik|bHLHe12	neuronal PAS domain protein 3	protein-coding	0.000000	0.258706	
mm_117203.1	chr13	64066090	64066290	-	1	NA	NA	NA	23011	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.005000	0.492537	-59(CCACATAAAAAG,-,0.00)
mm_44162.1	chr5	150673762	150673962	+	1	NA	NA	NA	35	NM_001346503	100710	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	0.135000	0.731343	
mm_171585.1	chr4	147639131	147639331	-	1	NA	NA	NA	3277	NM_145078	112422	Mm.327194	NM_145078	ENSMUSG00000066000	Zfp979	2610305D13Rik|Ssm1b	zinc finger protein 979	protein-coding	0.005000	0.507463	
mm_45915.1	chr5	89438349	89438549	-	1	NA	NA	NA	19449	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.000000	0.338308	-77(GAGCTTAAAAGC,-,0.00)
mm_14150.1	chr2	126553489	126553689	+	1	NA	NA	NA	565	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0.040000	0.606965	
mm_59403.1	chr7	26816226	26816426	+	1	NA	NA	NA	7399	NM_013809	13108	Mm.102312	NM_013809	ENSMUSG00000049685	Cyp2g1	-	cytochrome P450, family 2, subfamily g, polypeptide 1	protein-coding	0.015000	0.422886	
mm_15026.1	chr2	152687048	152687248	+	1	NA	NA	NA	0	NM_025543	66405	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	0.105000	0.592040	
mm_13107.1	chr2	91526699	91526899	+	1	NA	NA	NA	-19523	NM_001165989	75786	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0.080000	0.641791	
mm_120214.1	chr14	62555675	62555875	+	1	NA	NA	NA	38	NM_001243857	629059	Mm.291864	NM_001243857	ENSMUSG00000035184	Fam124a	EG629059	family with sequence similarity 124, member A	protein-coding	0.180000	0.800995	
mm_94971.1	chr11	30954365	30954565	+	1	NA	NA	NA	67	NM_023906	65257	Mm.440539	NM_023906	ENSMUSG00000020305	Asb3	2400011J03Rik|Asb-3	ankyrin repeat and SOCS box-containing 3	protein-coding	0.105000	0.661692	
mm_91331.1	chr10	25296978	25297178	-	1	NA	NA	NA	2085	NM_018747	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.165000	0.815920	
mm_97508.1	chr11	78498954	78499154	+	1	NA	NA	NA	-66	NM_011707	22370	Mm.3667	NM_011707	ENSMUSG00000017344	Vtn	AI256434|Vn	vitronectin	protein-coding	0.020000	0.542289	-72(CTTTATAAAAAG,-,0.00)
mm_168000.1	chrX	170022207	170022407	+	1	NA	NA	NA	-43390	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.035000	0.402985	
mm_85412.1	chr9	103426345	103426545	-	1	NA	NA	NA	2867	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.005000	0.512438	
mm_4244.1	chr1	171389089	171389289	+	1	NA	NA	NA	229	NM_001005508	226652	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	0.015000	0.656716	
mm_166227.1	chr5	65860653	65860853	+	1	NA	NA	NA	-2816	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.015000	0.542289	
mm_86560.1	chr10	11281231	11281431	+	1	NA	NA	NA	1	NM_027968	71865	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0.165000	0.805970	
mm_85471.1	chr9	105764626	105764826	-	1	NA	NA	NA	44922	NM_172927	245026	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0.020000	0.462687	
mm_119866.1	chr14	54549474	54549674	+	1	NA	NA	NA	4787	NM_145462	219072	Mm.202152	NM_145462	ENSMUSG00000022177	Haus4	9430093H08Rik|AU016300|D14Ertd500e	HAUS augmin-like complex, subunit 4	protein-coding	0.010000	0.527363	
mm_37917.1	chr4	132785171	132785371	-	1	NA	NA	NA	11093	NM_001033308	230787	Mm.290912	NM_001033308	ENSMUSG00000037731	Themis2	ICB-1	thymocyte selection associated family member 2	protein-coding	0.030000	0.577114	
mm_167354.1	chr8	83918808	83919008	+	1	NA	NA	NA	18810	NM_181039	330814	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0.050000	0.592040	
mm_152825.1	chr19	23136470	23136670	-	1	NA	NA	NA	-4656	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.035000	0.557214	43(GCACATAAAGGG,-,0.00)
mm_161034.1	chr12	17266445	17266645	+	1	NA	NA	NA	-50	NM_027959	71853	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	0.145000	0.721393	
mm_74662.1	chr8	13583916	13584116	-	1	NA	NA	NA	-21555	NM_001080781	66501	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.005000	0.452736	
mm_148000.1	chr18	67718594	67718794	-	1	NA	NA	NA	5927	NM_001127177	19255	Mm.260433	NM_008977	ENSMUSG00000024539	Ptpn2	AI325124|Ptpt|TC-PTP	protein tyrosine phosphatase, non-receptor type 2	protein-coding	0.000000	0.318408	
mm_9728.1	chr1	180195893	180196093	-	1	NA	NA	NA	27	NM_023341	67426	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0.140000	0.701493	
mm_170963.1	chr2	58107949	58108149	+	1	NA	NA	NA	52073	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.055000	0.557214	
mm_125547.1	chr15	58449567	58449767	+	1	NA	NA	NA	34199	NM_145959	210998	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.020000	0.432836	
mm_53889.1	chr6	3376896	3377096	-	1	NA	NA	NA	22575	NM_010156	209086	Mm.196013	NM_010156	ENSMUSG00000047735	Samd9l	AA175286|ESTM25|mKIAA2005	sterile alpha motif domain containing 9-like	protein-coding	0.010000	0.383085	
mm_83345.1	chr9	44305542	44305742	-	1	NA	NA	NA	29	NM_172162	102423	Mm.24570	NM_172162	ENSMUSG00000032119	Hinfp	AA589481|HiNF-P|Mizf	histone H4 transcription factor	protein-coding	0.110000	0.681592	
mm_25025.1	chr3	98126920	98127120	+	1	NA	NA	NA	-33614	NM_027665	71078	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.000000	0.353234	-45(CCATTAATAGGT,+,0.00)
mm_144361.1	chr18	20310826	20311026	+	1	NA	NA	NA	53	NM_010079	13510	Mm.37953	NM_010079	ENSMUSG00000069441	Dsg1a	DG1|DGI|Dsg1|dsg1-alpha	desmoglein 1 alpha	protein-coding	0.015000	0.467662	
mm_104148.1	chr11	87073995	87074195	-	1	NA	NA	NA	42	NM_025638	66569	Mm.281887	NM_025638	ENSMUSG00000061666	Gdpd1	2610020H15Rik	glycerophosphodiester phosphodiesterase domain containing 1	protein-coding	0.125000	0.701493	
mm_30489.1	chr3	155093266	155093466	-	1	NA	NA	NA	12	NM_029330	75540	Mm.35218	NM_029330	ENSMUSG00000053870	Fpgt	1700016E03Rik	fucose-1-phosphate guanylyltransferase	protein-coding	0.100000	0.676617	
mm_116604.1	chr13	48625507	48625707	-	1	NA	NA	NA	65	NM_207232	218232	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding	0.150000	0.766169	
mm_3049.1	chr1	134040782	134040982	+	1	NA	NA	NA	3367	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.030000	0.567164	
mm_39467.1	chr5	19227124	19227324	+	1	NA	NA	NA	178	NM_001170746	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.025000	0.557214	
mm_126685.1	chr15	84906541	84906741	+	1	NA	NA	NA	-16787	NM_016714	18141	Mm.28379	NM_016714	ENSMUSG00000016619	Nup50	1700030K07Rik|AI413123|Npap60	nucleoporin 50	protein-coding	0.010000	0.497512	
mm_113374.1	chr13	33004441	33004641	+	1	NA	NA	NA	0	NM_009256	20723	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0.015000	0.522388	
mm_145406.1	chr18	57468410	57468610	+	1	NA	NA	NA	24	NM_001134697	629147	Mm.57415	NM_001134697	ENSMUSG00000069372	Ctxn3	ENSMUSG00000069372	cortexin 3	protein-coding	0.040000	0.522388	
mm_92333.1	chr10	75797643	75797843	-	1	NA	NA	NA	841	NM_008185	14871	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	0.025000	0.557214	
mm_21380.1	chr2	157425585	157425785	-	1	NA	NA	NA	1392	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.020000	0.537313	
mm_150815.1	chr19	44397255	44397455	+	1	NA	NA	NA	10354	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.010000	0.442786	
mm_30343.1	chr3	151742180	151742380	-	1	NA	NA	NA	7679	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.000000	0.343284	
mm_136464.1	chr16	95458920	95459120	-	1	NA	NA	NA	328	NM_001302154	13876	Mm.164531	NM_133659	ENSMUSG00000040732	Erg	D030036I24Rik	avian erythroblastosis virus E-26 (v-ets) oncogene related	protein-coding	0.025000	0.412935	
mm_74260.1	chr8	124897758	124897958	+	1	NA	NA	NA	-28	NM_001111141	244666	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	0.140000	0.696517	-5(GCGTCTTAAGGC,-,0.00)
mm_23568.1	chr3	63295723	63295923	+	1	NA	NA	NA	-49	NM_008604	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.115000	0.726368	
mm_151361.1	chr19	55912499	55912699	+	1	NA	NA	NA	17278	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.025000	0.547264	
mm_68559.1	chr7	114562867	114563067	-	1	NA	NA	NA	5	NR_110407	244209	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0.110000	0.731343	
mm_7628.1	chr1	127677672	127677872	-	1	NA	NA	NA	249	NM_028135	72160	Mm.281287	NM_028135	ENSMUSG00000026347	Tmem163	2610024A01Rik|SV31	transmembrane protein 163	protein-coding	0.130000	0.731343	
mm_81791.1	chr9	114998867	114999067	+	1	NA	NA	NA	-64980	NM_175380	333433	Mm.38198	NM_175380	ENSMUSG00000050627	Gpd1l	2210409H23Rik|D9Ertd660e	glycerol-3-phosphate dehydrogenase 1-like	protein-coding	0.015000	0.467662	
mm_62680.1	chr7	109752225	109752425	+	1	NA	NA	NA	-62	NM_020050	56786	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	0.120000	0.731343	
mm_106902.1	chr12	8014944	8015144	+	1	NA	NA	NA	37367	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.000000	0.378109	87(CTCCCTAAAAAG,-,0.00),89(CCCTAAAAAGCA,+,0.00)
mm_6892.1	chr1	84696036	84696236	-	1	NA	NA	NA	85	NM_152915	227325	Mm.292560	NM_152915	ENSMUSG00000036766	Dner	A930026D19Rik|BET|Bret	delta/notch-like EGF repeat containing	protein-coding	0.060000	0.601990	
mm_151969.1	chr19	5803477	5803677	-	1	NA	NA	NA	-905	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.110000	0.681592	
mm_20974.1	chr2	151973312	151973512	-	1	NA	NA	NA	-18	NM_001289151	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.055000	0.597015	
mm_170944.1	chr2	51871558	51871758	-	1	NA	NA	NA	62986	NM_001141982	71684	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	0.050000	0.542289	
mm_65464.1	chr7	25471922	25472122	-	1	NA	NA	NA	5603	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.005000	0.512438	
mm_77797.1	chr9	3030983	3031183	+	1	NA	NA	NA	7660	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.010000	0.318408	
mm_89191.1	chr10	86347271	86347471	+	1	NA	NA	NA	46959	NM_011595	21859	Mm.4871	NM_011595	ENSMUSG00000020044	Timp3	Timp-3	tissue inhibitor of metalloproteinase 3	protein-coding	0.010000	0.358209	
mm_38527.1	chr4	141538380	141538580	-	1	NA	NA	NA	117	NM_001347235	56381	Mm.299906	NM_019763	ENSMUSG00000040761	Spen	Mint|mKIAA0929	SPEN homolog, transcriptional regulator (Drosophila)	protein-coding	0.150000	0.771144	
mm_24506.1	chr3	92484156	92484356	+	1	NA	NA	NA	1625	NM_009264	20753	Mm.331191	NM_009264	ENSMUSG00000050359	Sprr1a	AI528815|SPR1a|mSPRR1A	small proline-rich protein 1A	protein-coding	0.010000	0.547264	
mm_160097.1	chr7	18431747	18431947	-	1	NA	NA	NA	208	NM_054063	114871	Mm.362025	NM_054063	ENSMUSG00000030373	Psg28	cea16	pregnancy-specific glycoprotein 28	protein-coding	0.005000	0.487562	
mm_10759.1	chr2	24153057	24153257	+	1	NA	NA	NA	-15	NM_027163	69677	Mm.45901	NM_027163	ENSMUSG00000026985	Il1f8	2310043N20Rik|Il36b	interleukin 1 family, member 8	protein-coding	0.010000	0.502488	
mm_99441.1	chr11	102432976	102433176	+	1	NA	NA	NA	2754	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.020000	0.621891	
mm_159217.1	chr2	127142451	127142651	-	1	NA	NA	NA	39	NM_001163528	73338	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	0.020000	0.552239	
mm_81269.1	chr9	108080354	108080554	+	1	NA	NA	NA	18	NM_008243	15235	Mm.8369	NM_008243	ENSMUSG00000032591	Mst1	D3F15S2h|D9H3F15S2|DNF15S2h|Hgfl	macrophage stimulating 1 (hepatocyte growth factor-like)	protein-coding	0.010000	0.582090	
mm_117321.1	chr13	67729027	67729227	-	1	NA	NA	NA	46	NM_145622	235907	Mm.440123	NM_145622	ENSMUSG00000071281	Zfp65	KRAB5|Zfp71-rs1|pz114	zinc finger protein 65	protein-coding	0.035000	0.492537	
mm_61013.1	chr7	49364898	49365098	+	1	NA	NA	NA	118809	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.025000	0.517413	
mm_101863.1	chr11	48871316	48871516	-	1	NA	NA	NA	-70	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding	0.040000	0.527363	
mm_74904.1	chr8	25203731	25203931	-	1	NA	NA	NA	-2289	NM_177089	320165	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.005000	0.457711	
mm_133417.1	chr16	85819152	85819352	+	1	NA	NA	NA	41	NR_040506	75310	Mm.108627	NR_040506		4930556C24Rik	-	RIKEN cDNA 4930556C24 gene	ncRNA	0.000000	0.447761	
mm_26836.1	chr3	11904817	11905017	-	1	NA	NA	NA	-60558	NR_040751	100038545	Mm.388494	NR_040751	ENSMUSG00000104015	Gm10745	ENSMUSG00000074696	predicted gene 10745	ncRNA	0.025000	0.472637	-48(CCTTTAATGAGG,+,0.00)
mm_86378.1	chr9	123844504	123844704	-	1	NA	NA	NA	7057	NM_148925	17281	Mm.252941	NM_148925	ENSMUSG00000025241	Fyco1	2810409M01Rik|Mem2|RUFY3|ZFYVE7	FYVE and coiled-coil domain containing 1	protein-coding	0.000000	0.457711	
mm_90696.1	chr10	130322787	130322987	+	1	NA	NA	NA	35	NM_183264	67596	Mm.131264	NM_183264	ENSMUSG00000034833	Tespa1	5830405N20Rik|A430001F24Rik|AI450549	thymocyte expressed, positive selection associated 1	protein-coding	0.020000	0.437811	
mm_43738.1	chr5	139822228	139822428	+	1	NA	NA	NA	4515	NM_025604	66506	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	0.015000	0.542289	
mm_66945.1	chr7	61982256	61982456	-	1	NA	NA	NA	3	NR_037287	100526507		NR_037287	ENSMUSG00000092850	Mir344g	mir-344g|mmu-mir-344g	microRNA 344g	ncRNA	0.005000	0.492537	
mm_159203.1	chr2	121109861	121110061	-	1	NA	NA	NA	-170	NM_001160424	640543	Mm.478785	NM_001160424	ENSMUSG00000079103	Tgm7	TGMZ|TGz	transglutaminase 7	protein-coding	0.000000	0.467662	
mm_137982.1	chr17	33594400	33594600	+	1	NA	NA	NA	-34592	NR_034153	328801	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	0.015000	0.497512	
mm_64797.1	chr7	6685429	6685629	-	1	NA	NA	NA	10903	NM_011769	22776	Mm.89976	NM_011769	ENSMUSG00000002266	Zim1	-	zinc finger, imprinted 1	protein-coding	0.015000	0.497512	
mm_167666.1	chr9	72970113	72970313	+	1	NA	NA	NA	11428	NM_001163725	67685	Mm.31817	NM_026314	ENSMUSG00000089865	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0.015000	0.492537	66(GCCTTTTTATGC,-,0.00),68(CTTTTTATGCTG,+,0.00)
mm_150197.1	chr19	32754819	32755019	+	1	NA	NA	NA	-2658	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.005000	0.457711	-48(CCTTTTCAACCC,+,0.00)
mm_117411.1	chr13	74020104	74020304	-	1	NA	NA	NA	10785	NM_182839	72948	Mm.39752	NM_182839	ENSMUSG00000021573	Tppp	2900041A09Rik|AI849835	tubulin polymerization promoting protein	protein-coding	0.055000	0.676617	
mm_144221.1	chr18	9799061	9799261	+	1	NA	NA	NA	91513	NM_130449	140792	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.005000	0.462687	
mm_17514.1	chr2	29194097	29194297	-	1	NA	NA	NA	53902	NM_001305805	171171	Mm.442448	NM_133500	ENSMUSG00000035513	Ntng2	2610016D08Rik|Lmnt2	netrin G2	protein-coding	0.020000	0.432836	
mm_144672.1	chr18	34624548	34624748	+	1	NA	NA	NA	24	NM_001166407	19348	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	0.070000	0.507463	
mm_86210.1	chr9	120009087	120009287	-	1	NA	NA	NA	14411	NM_011724	22437	Mm.10117	NM_011724	ENSMUSG00000079243	Xirp1	AI415219|Cmya1	xin actin-binding repeat containing 1	protein-coding	0.005000	0.452736	
mm_80962.1	chr9	103085788	103085988	+	1	NA	NA	NA	-26186	NM_173781	270192	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.005000	0.527363	
mm_151849.1	chr19	5771318	5771518	-	1	NA	NA	NA	-17	NM_023912	78891	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0.095000	0.726368	
mm_42045.1	chr5	108461225	108461425	+	1	NA	NA	NA	-7	NM_172716	69587	Mm.261218	NM_172716	ENSMUSG00000033623	Pcgf3	2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3	polycomb group ring finger 3	protein-coding	0.100000	0.686567	
mm_95062.1	chr11	32455300	32455500	+	1	NA	NA	NA	28	NM_173784	327900	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	0.140000	0.805970	
mm_81160.1	chr9	107296610	107296810	+	1	NA	NA	NA	51	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.075000	0.587065	
mm_166945.1	chr7	43553535	43553735	+	1	NA	NA	NA	-8735	NM_001008549	210104	Mm.333821	NM_001008549	ENSMUSG00000056592	Zfp658	-	zinc finger protein 658	protein-coding	0.010000	0.457711	
mm_163931.1	chr14	47384604	47384804	+	1	NA	NA	NA	10844	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.020000	0.467662	
mm_114401.1	chr13	63815235	63815435	+	1	NA	NA	NA	1	NM_023507	76251	Mm.186610	NM_023507	ENSMUSG00000021470	Ercc6l2	0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278	excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2	protein-coding	0.140000	0.711443	
mm_98628.1	chr11	96034829	96035029	+	1	NA	NA	NA	12	NM_033568	27681	Mm.372235	NM_033568	ENSMUSG00000006058	Snf8	D11Moh34	SNF8, ESCRT-II complex subunit, homolog (S. cerevisiae)	protein-coding	0.120000	0.711443	
mm_33281.1	chr4	128744900	128745100	+	1	NA	NA	NA	-14258	NM_001009819	215493	Mm.300900	NM_001009819	ENSMUSG00000028794	A3galt2	Gm433|iGb3|iGb3S	alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)	protein-coding	0.010000	0.512438	
mm_135151.1	chr16	35857682	35857882	-	1	NA	NA	NA	13600	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.005000	0.402985	
mm_131909.1	chr16	23269548	23269748	+	1	NA	NA	NA	-20822	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.005000	0.517413	
mm_67863.1	chr7	99131646	99131846	-	1	NA	NA	NA	9398	NM_178635	78610	Mm.323072	NM_178635	ENSMUSG00000035354	Uvrag	9530039D02Rik|AI648770|BB124205|Uvrag1|Uvragl	UV radiation resistance associated gene	protein-coding	0.010000	0.393035	
mm_24283.1	chr3	89230752	89230952	+	1	NA	NA	NA	1796	NM_013605	17829	Mm.16193	NM_013605	ENSMUSG00000042784	Muc1	CD227|EMA|Muc-1	mucin 1, transmembrane	protein-coding	0.010000	0.477612	
mm_5843.1	chr1	52953512	52953712	-	1	NA	NA	NA	-772	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.015000	0.398010	60(TTCCTTAAAGGG,-,0.00)
mm_172992.1	chrM	1288	1488	+	1	NA	NA	NA	NA	NA									0.020000	0.338308	
mm_40751.1	chr5	66853318	66853518	+	1	NA	NA	NA	107578	NM_001001980	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.000000	0.447761	
mm_52999.1	chr6	123269115	123269315	+	1	NA	NA	NA	7108	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.000000	0.398010	
mm_47402.1	chr5	123130749	123130949	-	1	NA	NA	NA	1780	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.015000	0.542289	
mm_104226.1	chr11	88552462	88552662	-	1	NA	NA	NA	-66689	NR_131025	68397	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	0.025000	0.517413	
mm_160841.1	chr11	49317542	49317742	+	1	NA	NA	NA	94	NM_206822	18307	Mm.377101	NM_206822	ENSMUSG00000100923	Olfr10	GA_x6K02T2QP88-6117098-6116163|L45|MOR256-55	olfactory receptor 10	protein-coding	0.010000	0.442786	
mm_17928.1	chr2	35462447	35462647	-	1	NA	NA	NA	-1098	NM_001145821	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.090000	0.691542	
mm_69521.1	chr7	135626336	135626536	-	1	NA	NA	NA	20608	NM_001316679	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.015000	0.522388	
mm_121074.1	chr14	98577317	98577517	+	1	NA	NA	NA	-407652	NM_007826	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.015000	0.358209	
mm_136557.1	chr17	3115027	3115227	+	1	NA	NA	NA	155	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.095000	0.721393	
mm_120542.1	chr14	67237627	67237827	+	1	NA	NA	NA	4435	NM_001276387	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.035000	0.547264	
mm_11217.1	chr2	29643673	29643873	+	1	NA	NA	NA	24053	NM_001039086	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.010000	0.547264	
mm_120328.1	chr14	63269074	63269274	+	1	NA	NA	NA	-23903	NM_001310610	14463	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0.035000	0.552239	-33(CCCCTTTAAAGA,-,0.00),-32(CCCTTTAAAGAG,+,0.00),-32(CCCTTTAAAGAG,-,0.00)
mm_93817.1	chr10	121438954	121439154	-	1	NA	NA	NA	37196	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.000000	0.323383	
mm_153916.1	chr19	47266783	47266983	-	1	NA	NA	NA	6706	NR_105961	102466782		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.020000	0.597015	
mm_158304.1	chrX	122397114	122397314	-	1	NA	NA	NA	171	NM_138742	54561	Mm.490573	NM_138742	ENSMUSG00000055733	Nap1l3	MB20	nucleosome assembly protein 1-like 3	protein-coding	0.100000	0.721393	
mm_57660.1	chr6	128487340	128487540	-	1	NA	NA	NA	39280	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.020000	0.452736	
mm_153710.1	chr19	44397896	44398096	-	1	NA	NA	NA	9713	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.035000	0.532338	
mm_106495.1	chr11	120348125	120348325	-	1	NA	NA	NA	270	NM_001313923	11465	Mm.196173	NM_009609	ENSMUSG00000062825	Actg1	AL023024|Actg|Actl|E51	actin, gamma, cytoplasmic 1	protein-coding	0.125000	0.761194	
mm_166709.1	chr6	116459353	116459553	+	1	NA	NA	NA	1725	NM_009662	11689	Mm.41072	NM_009662	ENSMUSG00000025701	Alox5	5-LO|5-LOX|5LO|5LX|AI850497|F730011J02	arachidonate 5-lipoxygenase	protein-coding	0.005000	0.512438	-79(CCATTTATAAAG,+,0.00)
mm_12587.1	chr2	73485229	73485429	+	1	NA	NA	NA	424	NM_001289723	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.040000	0.567164	
mm_8122.1	chr1	136135016	136135216	-	1	NA	NA	NA	3715	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.000000	0.497512	
mm_136884.1	chr17	13008297	13008497	+	1	NA	NA	NA	558	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.085000	0.606965	
mm_71077.1	chr8	34507065	34507265	+	1	NA	NA	NA	133151	NR_040706	330734	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	0.030000	0.467662	-73(CACTATAAAAGG,-,0.00)
mm_58642.1	chr7	6172445	6172645	+	1	NA	NA	NA	32	NM_001146024	72667	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0.065000	0.646766	
mm_47763.1	chr5	131495676	131495876	-	1	NA	NA	NA	-188254	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.020000	0.427861	
mm_92836.1	chr10	81496258	81496458	-	1	NA	NA	NA	5	NM_134009	103425	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	0.125000	0.726368	
mm_97289.1	chr11	76217527	76217727	+	1	NA	NA	NA	14	NM_021294	13168	Mm.347413	NM_021294	ENSMUSG00000038057	Dbil5	ELP	diazepam binding inhibitor-like 5	protein-coding	0.125000	0.681592	
mm_95873.1	chr11	58051240	58051440	+	1	NA	NA	NA	42276	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.005000	0.492537	
mm_170684.1	chr2	127210725	127210925	+	1	NA	NA	NA	2421	NM_177214	320632	Mm.215860	NM_177214	ENSMUSG00000003660	Snrnp200	A330064G03Rik|Ascc3l1|BC011390|HELIC2|U5-200-KD|U5-200KD	small nuclear ribonucleoprotein 200 (U5)	protein-coding	0.030000	0.542289	
mm_42555.1	chr5	116802667	116802867	+	1	NA	NA	NA	-210950	NM_026886	68955	Mm.146779	NM_026886	ENSMUSG00000063919	Srrm4	1500001A10Rik|B230202K19Rik|bv|mKIAA1853|nSR100	serine/arginine repetitive matrix 4	protein-coding	0.010000	0.457711	
mm_73198.1	chr8	95601421	95601621	+	1	NA	NA	NA	-25914	NM_001310539	70993	Mm.486561	NM_027640	ENSMUSG00000048400	Prss54	4931432M23Rik|Klkbl4	protease, serine 54	protein-coding	0.060000	0.557214	
mm_155014.1	chrX	41604697	41604897	+	1	NA	NA	NA	203268	NM_001290451	53623	Mm.327681	NM_016886	ENSMUSG00000001986	Gria3	2900064I19Rik|GluA3|GluR-C|GluR-K3|Glur-3|Glur3|Gluralpha3	glutamate receptor, ionotropic, AMPA3 (alpha 3)	protein-coding	0.015000	0.348259	30(TCTTTTAAAGTA,+,0.00)
mm_64719.1	chr7	4657664	4657864	-	1	NA	NA	NA	1186	NM_172894	243819	Mm.258670	NM_172894	ENSMUSG00000052296	Ppp6r1	2010309P17Rik|AI836219|B430201G11Rik|D030074N20Rik|Pp6r1|Saps1|mKIAA1115	protein phosphatase 6, regulatory subunit 1	protein-coding	0.015000	0.572139	
mm_140928.1	chr17	24251252	24251452	-	1	NA	NA	NA	57	NM_007634	12449	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	0.120000	0.701493	
mm_82003.1	chr9	121706698	121706898	+	1	NA	NA	NA	-1769	NM_178677	215474	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.015000	0.512438	-34(GCTTTAAGATCC,+,0.00)
mm_78921.1	chr9	45042443	45042643	+	1	NA	NA	NA	199	NM_007962	14012	Mm.33240	NM_007962	ENSMUSG00000032092	Mpzl2	Eva|Eva1	myelin protein zero-like 2	protein-coding	0.065000	0.651741	
mm_86225.1	chr9	120135720	120135920	-	1	NA	NA	NA	5386	NR_002902	104433	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	0.010000	0.552239	
mm_153855.1	chr19	46380867	46381067	-	1	NA	NA	NA	14768	NM_016860	54130	Mm.3118	NM_016860	ENSMUSG00000025228	Actr1a	Arp1|alpha-Arp1	ARP1 actin-related protein 1A, centractin alpha	protein-coding	0.040000	0.552239	38(GGCCATAAAGGA,-,0.00)
mm_166285.1	chr5	97710095	97710295	+	1	NA	NA	NA	-253187	NM_010294	14626	Mm.61206	NM_010294	ENSMUSG00000050553	Gk2	GKTA|Gk-rs2	glycerol kinase 2	protein-coding	0.005000	0.442786	
mm_70227.1	chr7	145283855	145284055	-	1	NA	NA	NA	56	NR_132644	233979	Mm.102235	NM_146206	ENSMUSG00000048677	Tpcn2	D830047E22Rik|Gm35086	two pore segment channel 2	protein-coding	0.050000	0.636816	
mm_117843.1	chr13	98692698	98692898	-	1	NA	NA	NA	2033	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.010000	0.477612	
mm_109271.1	chr12	109545648	109545848	+	1	NA	NA	NA	350	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.000000	0.373134	32(GGCCTTTTAAAC,-,0.00),34(CCTTTTAAACCA,+,0.00)
mm_105931.1	chr11	115133811	115134011	-	1	NA	NA	NA	81	NM_001347648	246746	Mm.277387	NM_145634	ENSMUSG00000047798	Cd300lf	CLIM1|CLM-1|CLM1|Digr2|F730004D16Rik|IREM1|IgSF13|LMIR3|Pigr3	CD300 molecule like family member F	protein-coding	0.030000	0.572139	
mm_93877.1	chr10	125242067	125242267	-	1	NA	NA	NA	86368	NM_011391	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.005000	0.238806	
mm_43461.1	chr5	136689199	136689399	+	1	NA	NA	NA	-3847	NM_001303019	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.025000	0.597015	-32(CACTATTTAAAG,-,0.00),-30(CTATTTAAAGAG,+,0.00)
mm_38377.1	chr4	138623889	138624089	-	1	NA	NA	NA	3	NM_029401	75718	Mm.251530	NM_029401	ENSMUSG00000028753	Vwa5b1	4931403E03Rik	von Willebrand factor A domain containing 5B1	protein-coding	0.010000	0.437811	
mm_139793.1	chr17	65950895	65951095	+	1	NA	NA	NA	192	NM_023053	65960	Mm.10153	NM_023053	ENSMUSG00000024098	Twsg1	1810013J15Rik|9030422N06Rik|AW552143|D17Ertd403e|Tsg|Twg	twisted gastrulation BMP signaling modulator 1	protein-coding	0.170000	0.796020	
mm_103384.1	chr11	75415537	75415737	-	1	NA	NA	NA	6986	NM_011340	20317	Mm.2044	NM_011340	ENSMUSG00000000753	Serpinf1	AI195227|EPC-1|Pedf|Pedfl|Sdf3	serine (or cysteine) peptidase inhibitor, clade F, member 1	protein-coding	0.015000	0.537313	
mm_136528.1	chr16	97462806	97463006	-	1	NA	NA	NA	0	NR_003520	17857	Mm.33996	NM_010846	ENSMUSG00000000386	Mx1	AI893580|Mx|Mx-1	MX dynamin-like GTPase 1	protein-coding	0.005000	0.512438	-33(CACTATTTAAAG,-,0.00),-31(CTATTTAAAGAG,+,0.00)
mm_139731.1	chr17	57477215	57477415	+	1	NA	NA	NA	67999	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.000000	0.348259	
mm_115010.1	chr13	98354185	98354385	+	1	NA	NA	NA	40	NM_008242	15229	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	0.050000	0.631841	
mm_108197.1	chr12	76837337	76837537	+	1	NA	NA	NA	-30	NM_145927	110606	Mm.151174	NM_145927	ENSMUSG00000033373	Fntb	2010013E13Rik|AA409500	farnesyltransferase, CAAX box, beta	protein-coding	0.065000	0.492537	
mm_90636.1	chr10	128498695	128498895	+	1	NA	NA	NA	-110	NM_172259	216459	Mm.291688	NM_172259	ENSMUSG00000039824	Myl6b	5730437E04Rik|BC037527|MLC1SA	myosin, light polypeptide 6B	protein-coding	0.065000	0.636816	
mm_81075.1	chr9	106222552	106222752	+	1	NA	NA	NA	54	NM_031178	81897	Mm.44889	NM_031178	ENSMUSG00000045322	Tlr9	-	toll-like receptor 9	protein-coding	0.010000	0.557214	
mm_151206.1	chr19	53600067	53600267	+	1	NA	NA	NA	-229	NM_007790	13006	Mm.14910	NM_007790	ENSMUSG00000024974	Smc3	Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD	structural maintenance of chromosomes 3	protein-coding	0.100000	0.631841	
mm_57995.1	chr6	136172334	136172534	-	1	NA	NA	NA	1077	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.125000	0.701493	
mm_20674.1	chr2	132253096	132253296	-	1	NA	NA	NA	-16	NM_011045	18538	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0.100000	0.636816	
mm_130140.1	chr15	90898391	90898591	-	1	NA	NA	NA	-15	NR_033583	20738	Mm.431547	NR_033583		Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.015000	0.527363	
mm_10798.1	chr2	24349502	24349702	+	1	NA	NA	NA	4231	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.020000	0.522388	-13(CCCCTTATAGTC,+,0.00)
mm_170149.1	chr17	45569404	45569604	-	1	NA	NA	NA	3757	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.020000	0.437811	
mm_155908.1	chrX	101747507	101747707	+	1	NA	NA	NA	-13460	NM_009910	12766	Mm.12876	NM_009910	ENSMUSG00000050232	Cxcr3	Cd183|Cmkar3	chemokine (C-X-C motif) receptor 3	protein-coding	0.010000	0.497512	
mm_68222.1	chr7	104420693	104420893	-	1	NA	NA	NA	44400	NM_009099	20128	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.005000	0.432836	
mm_102862.1	chr11	69404884	69405084	-	1	NA	NA	NA	-6750	NM_025915	67020	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.035000	0.636816	
mm_31252.1	chr4	45011638	45011838	+	1	NA	NA	NA	674	NM_001163284	230119	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0.045000	0.537313	
mm_121703.1	chr14	15438655	15438855	-	1	NA	NA	NA	232	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding	0.140000	0.761194	
mm_136692.1	chr17	6978803	6979003	+	1	NA	NA	NA	43	NM_026611	68195	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	0.115000	0.741294	
mm_21294.1	chr2	157006927	157007127	-	1	NA	NA	NA	48	NM_025853	66934	Mm.25410	NM_025853	ENSMUSG00000027635	Dsn1	1700022L09Rik|AW552447	DSN1 homolog, MIS12 kinetochore complex component	protein-coding	0.125000	0.681592	
mm_27299.1	chr3	48608969	48609169	-	1	NA	NA	NA	31	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo	0.070000	0.592040	
mm_87491.1	chr10	51495191	51495391	+	1	NA	NA	NA	4393	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.005000	0.383085	
mm_124555.1	chr14	122913109	122913309	-	1	NA	NA	NA	-44	NM_145466	223267	Mm.379358	NM_145466	ENSMUSG00000041625	Ggact	A2ld1	gamma-glutamylamine cyclotransferase	protein-coding	0.140000	0.736318	
mm_31887.1	chr4	82507873	82508073	+	1	NA	NA	NA	-16	NR_137202	102635783	Mm.41666	NR_137202		Gm11266	OTTMUSG00000000396	predicted gene 11266	ncRNA	0.015000	0.582090	
mm_37192.1	chr4	117495563	117495763	-	1	NA	NA	NA	1389	NM_025739	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.025000	0.313433	
mm_57624.1	chr6	128244331	128244531	-	1	NA	NA	NA	56382	NM_001080979	21679	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	0.005000	0.427861	
mm_31351.1	chr4	46787514	46787714	+	1	NA	NA	NA	-137415	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	0.035000	0.567164	
mm_128250.1	chr15	36770266	36770466	-	1	NA	NA	NA	20566	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.000000	0.323383	
mm_166418.1	chr5	137151536	137151736	-	1	NA	NA	NA	-35429	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.497512	
mm_123986.1	chr14	75593088	75593288	-	1	NA	NA	NA	-72	NM_001164139	67926	Mm.23361	NM_026457	ENSMUSG00000034913	Spert	1700086N05Rik|AI596460|Nurit	spermatid associated	protein-coding	0.015000	0.562189	
mm_137773.1	chr17	29491558	29491758	+	1	NA	NA	NA	613	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.070000	0.626866	
mm_26502.1	chr3	145758592	145758792	+	1	NA	NA	NA	0	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.120000	0.746269	
mm_68054.1	chr7	101832844	101833044	-	1	NA	NA	NA	4880	NM_001122739	16332	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0.025000	0.597015	
mm_111410.1	chr12	91384224	91384424	-	1	NA	NA	NA	85	NM_181815	75216	Mm.312204	NM_181815	ENSMUSG00000061533	Cep128	4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20	centrosomal protein 128	protein-coding	0.085000	0.636816	
mm_25279.1	chr3	105452246	105452446	+	1	NA	NA	NA	16	NM_001039347	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	0.145000	0.800995	
mm_55003.1	chr6	48835857	48836057	-	1	NA	NA	NA	5031	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.010000	0.467662	
mm_105372.1	chr11	103218330	103218530	-	1	NA	NA	NA	2	NM_177801	328019	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0.055000	0.676617	
mm_54963.1	chr6	48708781	48708981	-	1	NA	NA	NA	-637	NM_153175	231931	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	0.005000	0.467662	
mm_164157.1	chr15	67107296	67107496	+	1	NA	NA	NA	69486	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.005000	0.447761	
mm_169251.1	chr13	78202461	78202661	+	1	NA	NA	NA	-3688	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.025000	0.472637	47(GTTTATATAGAA,+,0.00)
mm_113101.1	chr13	24376083	24376283	+	1	NA	NA	NA	-38939	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.010000	0.407960	
mm_97537.1	chr11	78676522	78676722	+	1	NA	NA	NA	20803	NM_008702	18099	Mm.9001	NM_008702	ENSMUSG00000017376	Nlk	AI194375	nemo like kinase	protein-coding	0.010000	0.417910	
mm_15757.1	chr2	164277019	164277219	+	1	NA	NA	NA	1188	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.015000	0.407960	
mm_130388.1	chr15	97867109	97867309	-	1	NA	NA	NA	-22707	NM_001204278	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.025000	0.542289	
mm_61831.1	chr7	88280416	88280616	+	1	NA	NA	NA	2431	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.020000	0.417910	
mm_171977.1	chr5	89499775	89499975	-	1	NA	NA	NA	-27554	NM_133192	104443	Mm.447881	NM_133192	ENSMUSG00000035528	Npffr2	Gpr74|HG31|NPFF2	neuropeptide FF receptor 2	protein-coding	0.015000	0.477612	
mm_44065.1	chr5	148399923	148400123	+	1	NA	NA	NA	-119	NM_007513	11987	Mm.275489	NM_007513	ENSMUSG00000041313	Slc7a1	4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	protein-coding	0.085000	0.686567	
mm_143641.1	chr17	79354772	79354972	-	1	NA	NA	NA	219	NM_026514	260409	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	0.100000	0.681592	
mm_68869.1	chr7	126445937	126446137	-	1	NA	NA	NA	17036	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.020000	0.522388	
mm_59231.1	chr7	24709154	24709354	+	1	NA	NA	NA	-5	NM_199150	232972	Mm.293074	NM_199150	ENSMUSG00000045587	BC049730	Lypd10	cDNA sequence BC049730	protein-coding	0.025000	0.487562	76(CAGCTTAAAAGG,-,0.00),78(GCTTAAAAGGAC,+,0.00)
mm_91674.1	chr10	43221280	43221480	-	1	NA	NA	NA	-106	NM_027772	71365	Mm.490430	NM_027772	ENSMUSG00000038240	Pdss2	5430420P03Rik|Gm60|Plmp|kd|mDLP1	prenyl (solanesyl) diphosphate synthase, subunit 2	protein-coding	0.070000	0.641791	
mm_47509.1	chr5	124052120	124052320	-	1	NA	NA	NA	-19960	NM_177876	330192	Mm.4079	NM_177876	ENSMUSG00000066278	Vps37b	2300007F24Rik|AI415429|BC026744	vacuolar protein sorting 37B	protein-coding	0.015000	0.512438	
mm_16496.1	chr2	181187508	181187708	+	1	NA	NA	NA	265	NM_025598	66496	Mm.213943	NM_025598	ENSMUSG00000016344	Ppdpf	0610012G23Rik|2610317A05Rik|2700038C09Rik|3110053G12Rik	pancreatic progenitor cell differentiation and proliferation factor	protein-coding	0.070000	0.666667	
mm_30049.1	chr3	136325838	136326038	-	1	NA	NA	NA	128	NM_001310749	242248	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0.010000	0.601990	
mm_10245.1	chr2	8950054	8950254	+	1	NA	NA	NA	-239361	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.010000	0.313433	-33(GCTTTAAAACTG,+,0.00),65(CTCTTTAAATGA,-,0.00)
mm_172269.1	chr6	79284863	79285063	-	1	NA	NA	NA	252921	NR_040301	100504701	Mm.400420	NR_040301	ENSMUSG00000108072	Gm20362	-	predicted gene, 20362	ncRNA	0.000000	0.472637	
mm_7807.1	chr1	131527180	131527380	-	1	NA	NA	NA	81	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.075000	0.666667	
mm_123051.1	chr14	55628265	55628465	-	1	NA	NA	NA	7313	NM_024267	75751	Mm.27546	NM_024267	ENSMUSG00000002319	Ipo4	8430408O15Rik|AA409693|Imp4a|RanBP4	importin 4	protein-coding	0.035000	0.606965	-28(GGCTATAAAAAA,-,0.00)
mm_133004.1	chr16	55967036	55967236	+	1	NA	NA	NA	861	NM_024218	68193	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0.010000	0.402985	62(CTCTTTTAAAGT,-,0.00),63(TCTTTTAAAGTT,+,0.00)
mm_35557.1	chr4	41569350	41569550	-	1	NA	NA	NA	77	NM_001159583	71901	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	0.105000	0.681592	
mm_86954.1	chr10	24919954	24920154	+	1	NA	NA	NA	7416	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.010000	0.388060	
mm_28338.1	chr3	89387791	89387991	-	1	NA	NA	NA	-3973	NR_040403	545539	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	ENSMUSG00000074466|OTTMUSG00000021274	predicted gene 15417	ncRNA	0.025000	0.651741	
mm_51366.1	chr6	72636277	72636477	+	1	NA	NA	NA	6546	NR_040421	100038714	Mm.321330	NR_040421		Gm15401	ENSMUSG00000072999|OTTMUSG00000021199	predicted gene 15401	ncRNA	0.025000	0.567164	
mm_135390.1	chr16	44332755	44332955	-	1	NA	NA	NA	-17	NM_001159419	320007	Mm.242144	NM_198034	ENSMUSG00000022696	Sidt1	AW045928|B830021E24Rik	SID1 transmembrane family, member 1	protein-coding	0.030000	0.512438	
mm_168679.1	chr1	195279187	195279387	-	1	NA	NA	NA	-102572	NM_007758	12902	Mm.235387	NM_007758	ENSMUSG00000026616	Cr2	C3DR|CD21|CD35|Cr-1|Cr-2|Cr1	complement receptor 2	protein-coding	0.010000	0.432836	
mm_91148.1	chr10	20175238	20175438	-	1	NA	NA	NA	26418	NM_001198635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.010000	0.487562	
mm_108453.1	chr12	82616828	82617028	+	1	NA	NA	NA	3	NM_015812	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0.135000	0.786070	
mm_54152.1	chr6	22356083	22356283	-	1	NA	NA	NA	-102	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.140000	0.756219	
mm_62507.1	chr7	102101644	102101844	+	1	NA	NA	NA	1	NM_009710	11870	Mm.261071	NM_009710	ENSMUSG00000030996	Art1	ADPRT|ARTC1|Yac-1	ADP-ribosyltransferase 1	protein-coding	0.020000	0.547264	-34(CAGTATAAAAGA,-,0.00)
mm_164903.1	chr18	67610692	67610892	-	1	NA	NA	NA	30544	NM_001081073	225659	Mm.111928	NM_001081073	ENSMUSG00000073542	Cep76	6230425F05Rik|9630013E05	centrosomal protein 76	protein-coding	0.210000	0.820896	
mm_97227.1	chr11	75651134	75651334	+	1	NA	NA	NA	-275	NM_008659	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.030000	0.507463	
mm_94600.1	chr11	12037552	12037752	+	1	NA	NA	NA	-232	NM_010345	14783	Mm.273117	NM_010345	ENSMUSG00000020176	Grb10	5730571D09Rik|AI325020|Meg1|mKIAA0207	growth factor receptor bound protein 10	protein-coding	0.175000	0.810945	
mm_79148.1	chr9	47712683	47712883	+	1	NA	NA	NA	105425	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.025000	0.412935	
mm_139371.1	chr17	51829575	51829775	+	1	NA	NA	NA	2972	NM_009122	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.000000	0.388060	-91(CCTTTTAGGCCT,+,0.00)
mm_166048.1	chr4	131046475	131046675	+	1	NA	NA	NA	-36101	NR_130167	77835	Mm.348412	NR_130167	ENSMUSG00000086262	A930031H19Rik	A930004I12Rik	RIKEN cDNA A930031H19 gene	ncRNA	0.015000	0.482587	
mm_49094.1	chr6	7562268	7562468	+	1	NA	NA	NA	7297	NM_009311	21333	Mm.1440	NM_009311	ENSMUSG00000061762	Tac1	4930528L02Rik|NK-1|NK1|Nkna|PPT-A|PPTA|SP	tachykinin 1	protein-coding	0.025000	0.412935	
mm_153791.1	chr19	45903719	45903919	-	1	NA	NA	NA	-87756	NM_145703	80906	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	0.000000	0.373134	-38(GCTTTTCTAGTC,+,0.00),-7(TTTTTTAAAGAC,+,0.00)
mm_159019.1	chr1	171360718	171360918	-	1	NA	NA	NA	-20	NM_001033039	68874	Mm.10756	NM_001033039	ENSMUSG00000045259	Klhdc9	1190002J23Rik|AA087357|ESTM31	kelch domain containing 9	protein-coding	0.045000	0.557214	
mm_65863.1	chr7	29397594	29397794	-	1	NA	NA	NA	93689	NM_013874	29861	Mm.101885	NM_013874	ENSMUSG00000030584	Dpf1	Neud4	D4, zinc and double PHD fingers family 1	protein-coding	0.005000	0.482587	
mm_97483.1	chr11	78324373	78324573	+	1	NA	NA	NA	275	NM_009657	11676	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0.025000	0.522388	
mm_110484.1	chr12	51925334	51925534	-	1	NA	NA	NA	45887	NM_177171	320487	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	0.030000	0.517413	
mm_151732.1	chr19	4877791	4877991	-	1	NA	NA	NA	18	NM_013456	11474	Mm.5316	NM_013456	ENSMUSG00000006457	Actn3	-	actinin alpha 3	protein-coding	0.050000	0.646766	
mm_105981.1	chr11	115612397	115612597	-	1	NA	NA	NA	6	NM_027162	69674	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	0.140000	0.746269	
mm_2139.1	chr1	88087760	88087960	+	1	NA	NA	NA	-7141	NM_201642	394432	Mm.300095	NM_201642	ENSMUSG00000090124	Ugt1a7c	A10'|A13|Ugt1a10	UDP glucuronosyltransferase 1 family, polypeptide A7C	protein-coding	0.010000	0.572139	
mm_98050.1	chr11	85739839	85740039	+	1	NA	NA	NA	-20195	NR_045875	71489	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.015000	0.487562	
mm_146275.1	chr18	77882257	77882457	+	1	NA	NA	NA	-56110	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499|mKIAA1632	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.005000	0.492537	
mm_155928.1	chrX	103447650	103447850	+	1	NA	NA	NA	16233	NR_002844	22097	Mm.472939	NR_002844	ENSMUSG00000085715	Tsix	-	X (inactive)-specific transcript, opposite strand	ncRNA	0.075000	0.606965	
mm_84191.1	chr9	60510910	60511110	-	1	NA	NA	NA	25	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.010000	0.587065	
mm_113790.1	chr13	45965121	45965321	+	1	NA	NA	NA	-230	NM_009124	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.110000	0.736318	
mm_10649.1	chr2	20665769	20665969	+	1	NA	NA	NA	146356	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.010000	0.512438	82(GCCTATAAACCC,+,0.00)
mm_120123.1	chr14	59626215	59626415	+	1	NA	NA	NA	1034	NM_145463	219134	Mm.275409	NM_145463	ENSMUSG00000044461	Shisa2	9430059P22Rik|MAd2|Tmem46|mShisa|shisa	shisa family member 2	protein-coding	0.125000	0.721393	
mm_162287.1	chr1	24613085	24613285	+	1	NA	NA	NA	-25748	NM_007733	12823	Mm.329196	NM_007733	ENSMUSG00000026141	Col19a1	-	collagen, type XIX, alpha 1	protein-coding	0.020000	0.338308	
mm_8545.1	chr1	155099532	155099732	-	1	NA	NA	NA	4	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.095000	0.601990	-35(GCATATATAAGG,-,0.00)
mm_147123.1	chr18	35822770	35822970	-	1	NA	NA	NA	-6948	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.020000	0.467662	82(GGGCATTTAAGG,-,0.00)
mm_17129.1	chr2	24834482	24834682	-	1	NA	NA	NA	-71430	NM_007579	12287	Mm.4424	NM_007579	ENSMUSG00000004113	Cacna1b	AW050276|AW060892|AW822256|BIII|Cav2.2|Cchn1a|alpha(1B)	calcium channel, voltage-dependent, N type, alpha 1B subunit	protein-coding	0.010000	0.378109	
mm_148931.1	chr19	7018221	7018421	+	1	NA	NA	NA	1148	NM_153795	108101	Mm.157591	NM_153795	ENSMUSG00000024965	Fermt3	C79673|Kindlin3	fermitin family member 3	protein-coding	0.010000	0.567164	
mm_171686.1	chr4	58391529	58391729	-	1	NA	NA	NA	49469	NR_037278	100526502		NR_037278	ENSMUSG00000093293	Mir3095	mir-3095|mmu-mir-3095	microRNA 3095	ncRNA	0.040000	0.616915	
mm_143493.1	chr17	71475213	71475413	-	1	NA	NA	NA	30	NM_028887	74355	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0.160000	0.736318	
mm_51176.1	chr6	70726615	70726815	+	1	NA	NA	NA	65460	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.020000	0.507463	
mm_163780.1	chr13	120044258	120044458	-	1	NA	NA	NA	7846	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.005000	0.333333	
mm_16936.1	chr2	14055937	14056137	-	1	NA	NA	NA	-2	NM_013935	30963	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	0.165000	0.830846	
mm_37793.1	chr4	130519880	130520080	-	1	NA	NA	NA	54056	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.040000	0.592040	
mm_94609.1	chr11	16257657	16257857	+	1	NA	NA	NA	33	NM_145967	211739	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding	0.125000	0.701493	
mm_139119.1	chr17	47436528	47436728	+	1	NA	NA	NA	-11	NM_145489	224833	Mm.218444	NM_145489	ENSMUSG00000034382	AI661453	-	expressed sequence AI661453	protein-coding	0.110000	0.736318	
mm_144020.1	chr17	89910343	89910543	-	1	NA	NA	NA	177925	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.030000	0.492537	
mm_61239.1	chr7	65644774	65644974	+	1	NA	NA	NA	-24	NM_172310	272396	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0.060000	0.696517	
mm_85281.1	chr9	99692092	99692292	-	1	NA	NA	NA	17871	NM_019815	56492	Mm.386784	NM_019815	ENSMUSG00000032473	Cldn18	-	claudin 18	protein-coding	0.015000	0.452736	
mm_93995.1	chr10	127534482	127534682	-	1	NA	NA	NA	-23	NM_183297	104080	Mm.437200	NM_183297	ENSMUSG00000040258	Nxph4	1110036M10Rik|AI851051	neurexophilin 4	protein-coding	0.150000	0.810945	
mm_16257.1	chr2	173272918	173273118	+	1	NA	NA	NA	3515	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.025000	0.447761	
mm_102523.1	chr11	60913664	60913864	-	1	NA	NA	NA	28	NM_025294	24083	Mm.22780	NM_025294	ENSMUSG00000018931	Natd1	AI256713|F3-2|Gm16515|Gtlf3b	N-acetyltransferase domain containing 1	protein-coding	0.150000	0.716418	
mm_161315.1	chr14	43819534	43819734	-	1	NA	NA	NA	5	NM_007894	13586	Mm.86948	NM_007894	ENSMUSG00000072601	Ear1	EAR-1|ECP 1|Raf1	eosinophil-associated, ribonuclease A family, member 1	protein-coding	0.005000	0.537313	
mm_129049.1	chr15	75352025	75352225	-	1	NA	NA	NA	79704	NR_108041	105892	Mm.38909	NM_001039720	ENSMUSG00000053168	9030619P08Rik	-	lymphocyte antigen 6 complex pseudogene	pseudo	0.010000	0.492537	
mm_120862.1	chr14	75229383	75229583	+	1	NA	NA	NA	-12804	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.010000	0.388060	
mm_109278.1	chr12	109547018	109547218	+	1	NA	NA	NA	1720	NR_003633	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.000000	0.512438	
mm_79864.1	chr9	65032678	65032878	+	1	NA	NA	NA	320	NM_028906	74388	Mm.202749	NM_028906	ENSMUSG00000032393	Dpp8	2310004I03Rik|4932434F09Rik|AI666706|DPP VIII	dipeptidylpeptidase 8	protein-coding	0.105000	0.706468	
mm_160535.1	chr9	39669031	39669231	+	1	NA	NA	NA	72	NM_001011827	258087	Mm.377346	NM_001011827	ENSMUSG00000064110	Olfr963	MOR224-13|MOR224-7P	olfactory receptor 963	protein-coding	0.000000	0.467662	
mm_155657.1	chrX	86044095	86044295	+	1	NA	NA	NA	-4	NM_028554	73495	Mm.159020	NM_028554	ENSMUSG00000035454	Samt3	1700072E05Rik	spermatogenesis associated multipass transmembrane protein 3	protein-coding	0.000000	0.343284	
mm_89121.1	chr10	84838048	84838248	+	1	NA	NA	NA	0	NM_027689	71137	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.020000	0.517413	
mm_156188.1	chrX	133908520	133908720	+	1	NA	NA	NA	195	NM_001083895	68792	Mm.263553	NM_026838	ENSMUSG00000031253	Srpx2	1110039C07Rik|SRP|SRPUL	sushi-repeat-containing protein, X-linked 2	protein-coding	0.015000	0.457711	-54(GCTTTAAGACGA,+,0.00)
mm_47942.1	chr5	135394085	135394285	-	1	NA	NA	NA	361	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.125000	0.731343	
mm_132440.1	chr16	35938922	35939122	+	1	NA	NA	NA	5	NM_001013371	209200	Mm.390852	NM_001013371	ENSMUSG00000049502	Dtx3l	AU042200|BC023741	deltex 3-like, E3 ubiquitin ligase	protein-coding	0.070000	0.606965	-73(CCCTAAAGACCC,+,0.00)
mm_111416.1	chr12	91557929	91558129	-	1	NA	NA	NA	31620	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.005000	0.343284	
mm_49446.1	chr6	29348019	29348219	+	1	NA	NA	NA	13	NM_184053	12321	Mm.392075	NM_007594	ENSMUSG00000029767	Calu	9530075H20Rik	calumenin	protein-coding	0.085000	0.626866	
mm_65047.1	chr7	18646897	18647097	-	1	NA	NA	NA	9728	NM_027403	72242	Mm.326858	NM_027403	ENSMUSG00000070796	Psg21	1600019C01Rik|1600025N01Rik|1600026N13Rik|cea8	pregnancy-specific glycoprotein 21	protein-coding	0.000000	0.452736	
mm_25278.1	chr3	105452063	105452263	+	1	NA	NA	NA	-167	NM_001039347	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	0.095000	0.731343	
mm_146497.1	chr18	3280971	3281171	-	1	NA	NA	NA	61	NM_001311066	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.045000	0.452736	
mm_46632.1	chr5	108519036	108519236	-	1	NA	NA	NA	30891	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.005000	0.492537	
mm_161393.1	chr14	99099322	99099522	+	1	NA	NA	NA	-2	NM_029320	52023	Mm.22835	NM_029320	ENSMUSG00000022064	Pibf1	-	progesterone immunomodulatory binding factor 1	protein-coding	0.090000	0.696517	
mm_104177.1	chr11	87749315	87749515	-	1	NA	NA	NA	-7449	NR_029555	387160		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.015000	0.577114	
mm_12967.1	chr2	90732649	90732849	+	1	NA	NA	NA	-12621	NM_018828	55935	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0.010000	0.373134	76(CCTTTTAGAAGA,+,0.00)
mm_56214.1	chr6	89362464	89362664	-	1	NA	NA	NA	49	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.190000	0.835821	
mm_63495.1	chr7	127777241	127777441	+	1	NA	NA	NA	-48	NM_178029	233904	Mm.435494	NM_010940	ENSMUSG00000042308	Setd1a	BC010250|KMT2F|Nsccn1|mKIAA0339|mNSC1	SET domain containing 1A	protein-coding	0.150000	0.771144	
mm_65242.1	chr7	19820109	19820309	-	1	NA	NA	NA	2546	NM_033601	12051	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.020000	0.567164	
mm_7316.1	chr1	98095522	98095722	-	1	NA	NA	NA	10	NM_013626	18484	Mm.5121	NM_013626	ENSMUSG00000026335	Pam	PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding	0.130000	0.796020	
mm_162216.1	chrX	136957891	136958091	-	1	NA	NA	NA	-12	NM_001080967	100034363	Mm.381904	NM_001080967	ENSMUSG00000089996	Tmsb15b2	Tb15c	thymosin beta 15b2	protein-coding	0.030000	0.522388	
mm_153509.1	chr19	41363849	41364049	-	1	NA	NA	NA	21121	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.000000	0.427861	
mm_134008.1	chr16	4870594	4870794	-	1	NA	NA	NA	9157	NM_145359	207740	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.010000	0.462687	
mm_153430.1	chr19	40940123	40940323	-	1	NA	NA	NA	45518	NM_028319	72672	Mm.313523	NM_028319	ENSMUSG00000049164	Zfp518a	2810401C22Rik|6330417C12Rik|AI426493|Zfp518|Znf518|Znf518a|mKIAA0335	zinc finger protein 518A	protein-coding	0.010000	0.422886	
mm_10458.1	chr2	14294720	14294920	+	1	NA	NA	NA	33817	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.005000	0.427861	
mm_68894.1	chr7	126448656	126448856	-	1	NA	NA	NA	14317	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.045000	0.542289	
mm_161092.1	chr12	88181568	88181768	-	1	NA	NA	NA	226	NM_001105254	100039315	Mm.426539	NM_001105254	ENSMUSG00000066027	Gm10436	ENSMUSG00000072907	predicted gene 10436	protein-coding	0.000000	0.358209	2(GTTTATATACTG,+,0.00)
mm_45098.1	chr5	44634281	44634481	-	1	NA	NA	NA	165365	NM_001347349	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0.000000	0.298507	39(GTGCTTAAAAAG,-,0.00),41(GCTTAAAAAGCT,+,0.00)
mm_38450.1	chr4	140236730	140236930	-	1	NA	NA	NA	9981	NM_198610	230868	Mm.298731	NM_198610	ENSMUSG00000040972	Igsf21	BC055811|Gm141	immunoglobulin superfamily, member 21	protein-coding	0.010000	0.412935	
mm_119817.1	chr14	54225852	54226052	+	1	NA	NA	NA	27977	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.030000	0.527363	
mm_147300.1	chr18	39519170	39519370	-	1	NA	NA	NA	-32025	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.025000	0.537313	
mm_127791.1	chr15	3582240	3582440	-	1	NA	NA	NA	-498	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.045000	0.626866	
mm_98371.1	chr11	94044030	94044230	+	1	NA	NA	NA	-75	NM_001025430	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.035000	0.497512	
mm_140072.1	chr17	75005715	75005915	+	1	NA	NA	NA	286	NM_019919	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.115000	0.756219	
mm_19937.1	chr2	116065726	116065926	-	1	NA	NA	NA	-768	NM_010825	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.095000	0.691542	
mm_159083.1	chr2	28916167	28916367	-	1	NA	NA	NA	154	NM_019446	54422	Mm.21390	NM_019446	ENSMUSG00000026805	Barhl1	Dres115|MBH2	BarH-like 1 (Drosophila)	protein-coding	0.105000	0.686567	-90(TTTTTTAAAGGA,+,0.00)
mm_19986.1	chr2	118547454	118547654	-	1	NA	NA	NA	45	NM_001331221	171543	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.015000	0.527363	
mm_70828.1	chr8	23142889	23143089	+	1	NA	NA	NA	-327	NR_037293	100526510		NR_037293	ENSMUSG00000106471	Mir3107	mir-486b|mmu-mir-3107|mmu-mir-486b	microRNA 3107	ncRNA	0.020000	0.522388	80(CATTTTTAAAGG,-,0.00)
mm_166450.1	chr5	137268639	137268839	-	1	NA	NA	NA	-19515	NM_009599	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.015000	0.582090	
mm_25857.1	chr3	129757820	129758020	+	1	NA	NA	NA	-2598	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.005000	0.398010	-33(TGGTATAAAAGC,-,0.00)
mm_144430.1	chr18	21001702	21001902	+	1	NA	NA	NA	-155	NM_001303011	56515	Mm.253542	NM_019706	ENSMUSG00000024317	Rnf138	2410015A17Rik|2810480D20Rik|STRIN|Trif|Trif-d	ring finger protein 138	protein-coding	0.110000	0.691542	
mm_12412.1	chr2	70532929	70533129	+	1	NA	NA	NA	24210	NM_025744	66748	Mm.423014	NM_025744	ENSMUSG00000075302	Erich2	4933404M02Rik	glutamate rich 2	protein-coding	0.025000	0.492537	
mm_106977.1	chr12	9574343	9574543	+	1	NA	NA	NA	1	NM_011859	23967	Mm.45055	NM_011859	ENSMUSG00000048387	Osr1	Odd1|Osr	odd-skipped related 1 (Drosophila)	protein-coding	0.055000	0.621891	
mm_171974.1	chr5	89148281	89148481	+	1	NA	NA	NA	261121	NM_018760	54403	Mm.41044	NM_018760	ENSMUSG00000060961	Slc4a4	AI835705|NBC|NBC1	solute carrier family 4 (anion exchanger), member 4	protein-coding	0.005000	0.393035	
mm_106287.1	chr11	118202663	118202863	-	1	NA	NA	NA	9979	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.040000	0.601990	
mm_139813.1	chr17	66485903	66486103	+	1	NA	NA	NA	33667	NM_024448	19328	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0.045000	0.577114	
mm_25537.1	chr3	115683057	115683257	+	1	NA	NA	NA	31898	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.000000	0.462687	
mm_132315.1	chr16	33726659	33726859	+	1	NA	NA	NA	42293	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629|OTTMUSG00000027315	heart development protein with EGF-like domains 1	protein-coding	0.010000	0.527363	
mm_81349.1	chr9	108567939	108568139	+	1	NA	NA	NA	-280	NR_029577	387186		NR_029577	ENSMUSG00000105497	Mir191	Mirn191|mir-191|mmu-mir-191	microRNA 191	ncRNA	0.045000	0.562189	
mm_39533.1	chr5	21375626	21375826	+	1	NA	NA	NA	3053	NM_008013	14190	Mm.292100	NM_008013	ENSMUSG00000039899	Fgl2	AI385601|musfiblp	fibrinogen-like protein 2	protein-coding	0.030000	0.492537	
mm_84441.1	chr9	66124735	66124935	-	1	NA	NA	NA	51	NM_019727	56440	Mm.271891	NM_019727	ENSMUSG00000032382	Snx1	-	sorting nexin 1	protein-coding	0.070000	0.646766	24(CTGTCTATAAAG,-,0.00)
mm_41801.1	chr5	103753830	103754030	+	1	NA	NA	NA	-232	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.145000	0.771144	-64(GCCCTTAAAAGG,-,0.00),-63(CCCTTAAAAGGA,+,0.00),-62(CCTTAAAAGGAG,+,0.00)
mm_95554.1	chr11	52309568	52309768	+	1	NA	NA	NA	-26654	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.005000	0.502488	
mm_130226.1	chr15	96273236	96273436	-	1	NA	NA	NA	1939	NR_030690	319722	Mm.103823	NR_030690		E330033B04Rik	-	RIKEN cDNA E330033B04 gene	ncRNA	0.010000	0.328358	-59(CCCTTAATGGAA,+,0.00)
mm_56202.1	chr6	88897289	88897489	-	1	NA	NA	NA	1391	NM_008564	17216	Mm.16711	NM_008564	ENSMUSG00000002870	Mcm2	AA959861|AW476101|BM28|CDCL1|Mcmd2|mKIAA0030	minichromosome maintenance complex component 2	protein-coding	0.035000	0.641791	
mm_692.1	chr1	40580198	40580398	+	1	NA	NA	NA	71	NM_177084	110895	Mm.108602	NM_177084	ENSMUSG00000026065	Slc9a4	AW990558|D730009J23Rik|NHE4	solute carrier family 9 (sodium/hydrogen exchanger), member 4	protein-coding	0.020000	0.422886	
mm_46854.1	chr5	113654815	113655015	-	1	NA	NA	NA	-4525	NM_008153	14747	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.040000	0.512438	20(GGCTTTAAAAAC,-,0.00),21(GCTTTAAAAACG,+,0.00)
mm_163661.1	chr13	75825083	75825283	+	1	NA	NA	NA	-14703	NM_053108	93692	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.005000	0.427861	
mm_25680.1	chr3	122131895	122132095	+	1	NA	NA	NA	87535	NM_007378	11304	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0.010000	0.462687	
mm_79259.1	chr9	50752996	50753196	+	1	NA	NA	NA	125	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.015000	0.507463	
mm_160863.1	chr11	59752358	59752558	+	1	NA	NA	NA	-12304	NR_045476	69320	Mm.443242	NR_045476	ENSMUSG00000086330	1700007J10Rik	4930573L17Rik	RIKEN cDNA 1700007J10 gene	ncRNA	0.000000	0.507463	
mm_149432.1	chr19	11470647	11470847	+	1	NA	NA	NA	1379	NM_028595	73656	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.000000	0.373134	
mm_33129.1	chr4	124850700	124850900	+	1	NA	NA	NA	41	NM_153566	230734	Mm.258568	NM_153566	ENSMUSG00000028889	Yrdc	AV303379|BC023823|IRIP|ITIP	yrdC domain containing (E.coli)	protein-coding	0.165000	0.766169	
mm_142915.1	chr17	53568225	53568425	-	1	NA	NA	NA	1354	NM_020005	18519	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.025000	0.587065	
mm_111040.1	chr12	79192166	79192366	-	1	NA	NA	NA	-447	NM_021557	17252	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c	retinol dehydrogenase 11	protein-coding	0.030000	0.457711	
mm_94353.1	chr11	4941058	4941258	+	1	NA	NA	NA	-6363	NM_001243043	11764	Mm.274816	NM_007454	ENSMUSG00000009090	Ap1b1	Adtb1|b2b1660Clo	adaptor protein complex AP-1, beta 1 subunit	protein-coding	0.015000	0.497512	
mm_139239.1	chr17	47732960	47733160	+	1	NA	NA	NA	-3977	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.005000	0.557214	
mm_23340.1	chr3	54692788	54692988	+	1	NA	NA	NA	-217	NM_019995	56790	Mm.486375	NM_019995	ENSMUSG00000027751	Supt20	AA667204|AI450544|D3Ertd300e|Fam48a|Supt20h|p38IP	suppressor of Ty 20	protein-coding	0.105000	0.661692	
mm_62629.1	chr7	107595109	107595309	+	1	NA	NA	NA	158	NM_008905	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.050000	0.666667	
mm_119908.1	chr14	54950432	54950632	+	1	NA	NA	NA	-1390	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.065000	0.646766	
mm_87132.1	chr10	34283533	34283733	+	1	NA	NA	NA	1443	NM_009433	22110	Mm.20445	NM_009433	ENSMUSG00000047514	Tspyl1	Tspyl	testis-specific protein, Y-encoded-like 1	protein-coding	0.010000	0.442786	
mm_170386.1	chr18	60376544	60376744	+	1	NA	NA	NA	615	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.015000	0.507463	
mm_4647.1	chr1	180330382	180330582	+	1	NA	NA	NA	6	NM_001081175	320404	Mm.132535	NM_001081175	ENSMUSG00000038855	Itpkb	1110033J02Rik|E130307H12Rik	inositol 1,4,5-trisphosphate 3-kinase B	protein-coding	0.030000	0.542289	
mm_25011.1	chr3	97922115	97922315	+	1	NA	NA	NA	-7958	NM_001033779	433632	Mm.212421	NM_001033779		Gm5544	EG433632	predicted gene 5544	protein-coding	0.015000	0.417910	
mm_136083.1	chr16	84835409	84835609	-	1	NA	NA	NA	116	NM_016755	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.155000	0.766169	
mm_111838.1	chr12	107913507	107913707	-	1	NA	NA	NA	89807	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.010000	0.378109	-96(CTTTTTAAAAAG,+,0.00),-96(CTTTTTAAAAAG,-,0.00)
mm_16160.1	chr2	172440554	172440754	+	1	NA	NA	NA	76	NM_025542	66404	Mm.25157	NM_025542	ENSMUSG00000027502	Rtfdc1	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417	replication termination factor 2 domain containing 1	protein-coding	0.075000	0.587065	
mm_119142.1	chr14	31217758	31217958	+	1	NA	NA	NA	-15	NM_001025379	218877	Mm.27812	NM_001025379	ENSMUSG00000021904	Sema3g	AK129018	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G	protein-coding	0.020000	0.597015	-31(CCTTATAAGTGG,+,0.00)
mm_98248.1	chr11	88204317	88204517	+	1	NA	NA	NA	29	NM_001291271	64656	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	0.100000	0.676617	
mm_139831.1	chr17	69127330	69127530	+	1	NA	NA	NA	-29380	NM_013813	13823	Mm.131135	NM_013813	ENSMUSG00000024044	Epb41l3	4.1B|DAL1P|Dal1|Epb4.1l3|NBL3	erythrocyte membrane protein band 4.1 like 3	protein-coding	0.025000	0.537313	
mm_28418.1	chr3	90433382	90433582	-	1	NA	NA	NA	154	NM_145540	229543	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	0.105000	0.706468	
mm_1682.1	chr1	74856255	74856455	+	1	NA	NA	NA	1326	NM_009872	12570	Mm.153833	NM_009872	ENSMUSG00000090071	Cdk5r2	B230310J22Rik|p39	cyclin-dependent kinase 5, regulatory subunit 2 (p39)	protein-coding	0.075000	0.666667	
mm_87174.1	chr10	38965468	38965668	+	1	NA	NA	NA	53	NM_010681	16775	Mm.258065	NM_010681	ENSMUSG00000019846	Lama4	-	laminin, alpha 4	protein-coding	0.040000	0.626866	
mm_93077.1	chr10	89434791	89434991	-	1	NA	NA	NA	9076	NM_001284344	237436	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0.010000	0.378109	
mm_140185.1	chr17	81046889	81047089	+	1	NA	NA	NA	18096	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.005000	0.507463	
mm_52126.1	chr6	97943184	97943384	+	1	NA	NA	NA	13467	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.020000	0.422886	
mm_16692.1	chr2	6884849	6885049	-	1	NA	NA	NA	47	NM_010160	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.025000	0.477612	87(CTGCTTTTAAGG,-,0.00),89(GCTTTTAAGGTA,+,0.00)
mm_169419.1	chr1	45311565	45311765	+	1	NA	NA	NA	127	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.020000	0.497512	-67(TCCTATTTAAGG,-,0.00),-65(CTATTTAAGGCC,+,0.00)
mm_50552.1	chr6	49047278	49047478	+	1	NA	NA	NA	10860	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.040000	0.497512	
mm_142347.1	chr17	43612045	43612245	-	1	NA	NA	NA	18154	NM_001161366	210510	Mm.329058	NM_198418	ENSMUSG00000040140	Tdrd6	AB097085|Tdr2	tudor domain containing 6	protein-coding	0.070000	0.393035	
mm_137701.1	chr17	29090895	29091095	+	1	NA	NA	NA	16	NM_001111099	12575	Mm.195663	NM_007669	ENSMUSG00000023067	Cdkn1a	CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF	cyclin-dependent kinase inhibitor 1A (P21)	protein-coding	0.005000	0.532338	
mm_152517.1	chr19	11283773	11283973	-	1	NA	NA	NA	-60	NM_183190	269063	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	0.005000	0.393035	17(TGGTCTAAATGG,-,0.00)
mm_106276.1	chr11	117991771	117991971	-	1	NA	NA	NA	5014	NM_133757	74451	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.025000	0.577114	
mm_8347.1	chr1	150197384	150197584	-	1	NA	NA	NA	-32536	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.005000	0.398010	-67(ATTTTTATAGGG,+,0.00)
mm_116086.1	chr13	28554791	28554991	-	1	NA	NA	NA	155982	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.010000	0.482587	
mm_20316.1	chr2	127314419	127314619	-	1	NA	NA	NA	-21640	NM_010090	13537	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.015000	0.532338	
mm_131898.1	chr16	23239256	23239456	+	1	NA	NA	NA	13335	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.005000	0.318408	
mm_13195.1	chr2	93201496	93201696	+	1	NA	NA	NA	14012	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.005000	0.572139	
mm_106996.1	chr12	11266469	11266669	+	1	NA	NA	NA	683	NM_025695	67241	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	0.120000	0.691542	
mm_109982.1	chr12	12943006	12943206	-	1	NA	NA	NA	-1270	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.010000	0.462687	
mm_143789.1	chr17	81732874	81733074	-	1	NA	NA	NA	5413	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.005000	0.398010	
mm_5162.1	chr1	10037827	10038027	-	1	NA	NA	NA	232	NR_102282	26754	Mm.402384	NM_013715	ENSMUSG00000025917	Cops5	AI303502|CSN5|Jab1|Mov34|Sgn5	COP9 signalosome subunit 5	protein-coding	0.070000	0.587065	
mm_96615.1	chr11	69098861	69099061	+	1	NA	NA	NA	5	NM_011065	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.080000	0.671642	
mm_126046.1	chr15	76904831	76905031	+	1	NA	NA	NA	860	NM_012053	26961	Mm.30066	NM_012053	ENSMUSG00000003970	Rpl8	-	ribosomal protein L8	protein-coding	0.050000	0.592040	
mm_68540.1	chr7	113699670	113699870	-	1	NA	NA	NA	-66228	NM_145584	233744	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.020000	0.452736	
mm_17837.1	chr2	34326588	34326788	-	1	NA	NA	NA	45357	NM_001290576	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.000000	0.308458	
mm_75033.1	chr8	32009435	32009635	-	1	NA	NA	NA	-91332	NM_178591	211323	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding	0.100000	0.696517	
mm_79945.1	chr9	65965839	65966039	+	1	NA	NA	NA	56929	NM_173185	214897	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	0.010000	0.358209	
mm_130686.1	chr15	100681826	100682026	-	1	NA	NA	NA	5994	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.020000	0.502488	
mm_119417.1	chr14	45275961	45276161	+	1	NA	NA	NA	42511	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.015000	0.477612	
mm_21745.1	chr2	164804731	164804931	-	1	NA	NA	NA	50	NM_133240	170789	Mm.277878	NM_133240	ENSMUSG00000017307	Acot8	PTE-2|Pte1	acyl-CoA thioesterase 8	protein-coding	0.100000	0.636816	-33(GCCTATATAAGT,-,0.00)
mm_42748.1	chr5	120753893	120754093	+	1	NA	NA	NA	-4145	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.000000	0.343284	
mm_89019.1	chr10	82127909	82128109	+	1	NA	NA	NA	-4	NM_001163064	216177	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding	0.065000	0.636816	
mm_169879.1	chr16	37833995	37834195	+	1	NA	NA	NA	-34305	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.020000	0.462687	31(GCTTTAAGAGAA,+,0.00)
mm_140135.1	chr17	79626583	79626783	+	1	NA	NA	NA	11783	NM_201361	381110	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.025000	0.457711	
mm_10247.1	chr2	9177937	9178137	+	1	NA	NA	NA	-11478	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.010000	0.447761	3(GATTATTAAAGG,-,0.00)
mm_170948.1	chr2	53191083	53191283	-	1	NA	NA	NA	4	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.095000	0.676617	
mm_134242.1	chr16	12945833	12946033	-	1	NA	NA	NA	134543	NR_040507	75493	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.005000	0.522388	
mm_16520.1	chr2	181497134	181497334	+	1	NA	NA	NA	92	NM_001291204	66314	Mm.136648	NM_025482	ENSMUSG00000000827	Tpd52l2	2810411G23Rik|AU016537|C86069|D54	tumor protein D52-like 2	protein-coding	0.090000	0.636816	
mm_53468.1	chr6	134920619	134920819	+	1	NA	NA	NA	318	NM_009875	12576	Mm.2958	NM_009875	ENSMUSG00000003031	Cdkn1b	AA408329|AI843786|Kip1|p27|p27Kip1	cyclin-dependent kinase inhibitor 1B	protein-coding	0.080000	0.651741	
mm_121460.1	chr14	120506099	120506299	+	1	NA	NA	NA	27738	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.010000	0.522388	79(TTCTTTAAAAGC,-,0.00),80(TCTTTAAAAGCC,+,0.00)
mm_147120.1	chr18	35740315	35740515	-	1	NA	NA	NA	139	NM_001289592	72512	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0.025000	0.537313	
mm_64229.1	chr7	141691209	141691409	+	1	NA	NA	NA	969	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.030000	0.547264	
mm_98154.1	chr11	87617088	87617288	+	1	NA	NA	NA	24	NM_001045527	327992	Mm.390371	NM_001045527	ENSMUSG00000070345	Hsf5	Gm739|MLZ-220	heat shock transcription factor family member 5	protein-coding	0.135000	0.781095	
mm_89838.1	chr10	106878909	106879109	+	1	NA	NA	NA	244655	NM_001142804	380660	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding	0.000000	0.328358	33(CACTATTAATGC,-,0.00)
mm_163268.1	chr11	115037634	115037834	-	1	NA	NA	NA	-44	NM_001101656	100043123		NM_001101656	ENSMUSG00000069609	Cd300ld4	Gm11710|OTTMUSG00000003605	CD300 molecule like family member D4	protein-coding	0.010000	0.482587	
mm_81589.1	chr9	110476921	110477121	+	1	NA	NA	NA	27	NM_001163569	16578	Mm.42170	NM_010628	ENSMUSG00000032489	Kif9	-	kinesin family member 9	protein-coding	0.070000	0.601990	
mm_81217.1	chr9	107587679	107587879	+	1	NA	NA	NA	61	NM_025903	15983	Mm.215335	NM_025903	ENSMUSG00000010048	Ifrd2	1810034A24Rik|AA470234|AI838527|SKMc15	interferon-related developmental regulator 2	protein-coding	0.105000	0.676617	
mm_67129.1	chr7	70366654	70366854	-	1	NA	NA	NA	-8	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.020000	0.537313	
mm_68586.1	chr7	116033717	116033917	-	1	NA	NA	NA	-2770	NM_001025560	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.090000	0.711443	
mm_156030.1	chrX	107255948	107256148	+	1	NA	NA	NA	20	NM_001033251	213439	Mm.383562	NM_001033251	ENSMUSG00000073008	Gpr174	Gm376|Lypsr3	G protein-coupled receptor 174	protein-coding	0.005000	0.437811	
mm_3345.1	chr1	138137287	138137487	+	1	NA	NA	NA	37739	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.353234	
mm_106645.1	chr11	121054335	121054535	-	1	NA	NA	NA	9134	NM_026907	58210	Mm.116986	NM_026907	ENSMUSG00000039364	Sectm1b	1810003C24Rik|K12|Sectm1	secreted and transmembrane 1B	protein-coding	0.015000	0.547264	
mm_36620.1	chr4	89859215	89859415	-	1	NA	NA	NA	171117	NM_175647	242523	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	0.010000	0.412935	
mm_61888.1	chr7	89721303	89721503	+	1	NA	NA	NA	88585	NM_181407	109264	Mm.334011	NM_181407	ENSMUSG00000030621	Me3	1700020C08Rik|B230207H15Rik	malic enzyme 3, NADP(+)-dependent, mitochondrial	protein-coding	0.005000	0.427861	
mm_134696.1	chr16	22656927	22657127	-	1	NA	NA	NA	204	NM_138650	110197	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0.090000	0.656716	
mm_111793.1	chr12	104864945	104865145	-	1	NA	NA	NA	31	NR_104436	94040	Mm.244078	NM_053155	ENSMUSG00000021097	Clmn	9330188N17Rik|AI428889|AI788815|mKIAA1188	calmin	protein-coding	0.200000	0.895522	
mm_140172.1	chr17	80373527	80373727	+	1	NA	NA	NA	-85	NR_028385	791338	Mm.204722	NR_028385		Gm10190	ENSMUSG00000066938	predicted gene 10190	ncRNA	0.175000	0.791045	
mm_105330.1	chr11	102925008	102925208	-	1	NA	NA	NA	16	NM_197959	70218	Mm.32084	NM_197959	ENSMUSG00000051378	Kif18b	3000004C01Rik	kinesin family member 18B	protein-coding	0.110000	0.636816	
mm_124636.1	chr15	4112724	4112924	+	1	NA	NA	NA	-85418	NR_028266	414066	Mm.394461	NR_028266		BC037032	-	cDNA Sequence BC037032	ncRNA	0.010000	0.447761	
mm_38935.1	chr4	150195983	150196183	-	1	NA	NA	NA	5052	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.040000	0.482587	
mm_49698.1	chr6	34029339	34029539	+	1	NA	NA	NA	-9	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.080000	0.592040	
mm_144271.1	chr18	11084027	11084227	+	1	NA	NA	NA	-31560	NR_105023	68434	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0.020000	0.507463	
mm_21950.1	chr2	167062915	167063115	-	1	NA	NA	NA	0	NM_001033196	98999	Mm.297074	NM_001033196	ENSMUSG00000039501	Znfx1	AI481105|Astx3	zinc finger, NFX1-type containing 1	protein-coding	0.115000	0.731343	
mm_28345.1	chr3	89418171	89418371	-	1	NA	NA	NA	20	NM_016904	54124	Mm.3049	NM_016904	ENSMUSG00000028044	Cks1b	2410005G18Rik|2610005D03Rik|AA407784|Cks1|sid1334	CDC28 protein kinase 1b	protein-coding	0.085000	0.592040	
mm_117236.1	chr13	64289057	64289257	-	1	NA	NA	NA	-14169	NM_172587	218294	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	0.020000	0.447761	
mm_59696.1	chr7	28543836	28544036	+	1	NA	NA	NA	3051	NM_026716	68416	Mm.25210	NM_026716	ENSMUSG00000084174	Sycn	0910001K16Rik|1810038B08Rik|SYL	syncollin	protein-coding	0.005000	0.577114	-64(GGCTCTAAGAAG,-,0.00)
mm_169072.1	chr13	29255147	29255347	+	1	NA	NA	NA	238992	NR_045075	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0.045000	0.636816	
mm_150999.1	chr19	46653915	46654115	+	1	NA	NA	NA	18985	NM_007809	13074	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.010000	0.572139	
mm_102494.1	chr11	60296507	60296707	-	1	NA	NA	NA	56298	NM_153080	216810	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	0.005000	0.457711	
mm_73296.1	chr8	105000728	105000928	+	1	NA	NA	NA	-25	NM_001272045	436059	Mm.491825	NM_001272045	ENSMUSG00000091813	Ces2h	Ces2|EG436059|Gm5744	carboxylesterase 2H	protein-coding	0.025000	0.587065	
mm_11086.1	chr2	27761478	27761678	+	1	NA	NA	NA	50995	NM_001290482	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.010000	0.507463	
mm_96771.1	chr11	69935731	69935931	+	1	NA	NA	NA	-68	NM_016875	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.150000	0.805970	
mm_57225.1	chr6	123281450	123281650	-	1	NA	NA	NA	8321	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.348259	
mm_12983.1	chr2	90847055	90847255	+	1	NA	NA	NA	0	NM_001317241	56428	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	0.140000	0.741294	
mm_22044.1	chr2	168230229	168230429	-	1	NA	NA	NA	50	NM_010072	13480	Mm.422657	NM_010072	ENSMUSG00000078919	Dpm1	AI118379|AI194292	dolichol-phosphate (beta-D) mannosyltransferase 1	protein-coding	0.125000	0.666667	
mm_42865.1	chr5	122230934	122231134	+	1	NA	NA	NA	20747	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.010000	0.512438	
mm_39566.1	chr5	23387185	23387385	+	1	NA	NA	NA	47068	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.030000	0.417910	76(CTCTTTAAAAGA,-,0.00),77(TCTTTAAAAGAA,+,0.00)
mm_133479.1	chr16	90089829	90090029	+	1	NA	NA	NA	-52308	NR_033476	100038709	Mm.484070	NR_033476		Gm10789	ENSMUSG00000074924	predicted gene 10789	ncRNA	0.055000	0.527363	
mm_169708.1	chr15	75882416	75882616	-	1	NA	NA	NA	6207	NM_001282443	223645		NM_001282443	ENSMUSG00000098678	Mroh6	Gm19570	maestro heat-like repeat family member 6	protein-coding	0.005000	0.537313	
mm_150673.1	chr19	42051744	42051944	+	1	NA	NA	NA	-384	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	0.010000	0.472637	
mm_81318.1	chr9	108460450	108460650	+	1	NA	NA	NA	32	NM_133744	72454	Mm.46488	NM_133744	ENSMUSG00000049305	Ccdc71	2600016J21Rik	coiled-coil domain containing 71	protein-coding	0.115000	0.731343	
mm_14204.1	chr2	127247868	127248068	+	1	NA	NA	NA	-7	NM_175145	69470	Mm.200889	NM_175145	ENSMUSG00000034850	Tmem127	2310003P10Rik|AI314202|AI317350	transmembrane protein 127	protein-coding	0.105000	0.721393	
mm_98374.1	chr11	94044157	94044357	+	1	NA	NA	NA	52	NM_001025429	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.025000	0.552239	
mm_108213.1	chr12	77001386	77001586	+	1	NA	NA	NA	-39238	NM_001146176	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.000000	0.293532	
mm_78778.1	chr9	43796159	43796359	+	1	NA	NA	NA	51683	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	0.010000	0.552239	
mm_110107.1	chr12	26415180	26415380	-	1	NA	NA	NA	-18	NM_080563	108089	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	0.130000	0.731343	39(AGGCATAAAGGG,-,0.00)
mm_109827.1	chr12	3894550	3894750	-	1	NA	NA	NA	2906	NM_153743	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.025000	0.537313	
mm_31991.1	chr4	89477537	89477737	+	1	NA	NA	NA	-166605	NM_007670	12579	Mm.423094	NM_007670	ENSMUSG00000073802	Cdkn2b	AV083695|INK4b|MTS2|p15|p15(INK4b)|p15INK4b	cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)	protein-coding	0.000000	0.487562	
mm_116195.1	chr13	31625457	31625657	-	1	NA	NA	NA	-259	NM_010225	14238	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	0.080000	0.726368	
mm_72547.1	chr8	84001398	84001598	+	1	NA	NA	NA	-208	NM_183097	73453	Mm.75101	NM_183097	ENSMUSG00000046408	1700067K01Rik	-	RIKEN cDNA 1700067K01 gene	protein-coding	0.120000	0.711443	
mm_159479.1	chr4	34716413	34716613	-	1	NA	NA	NA	13693	NM_027041	69329	Mm.389548	NM_027041	ENSMUSG00000028294	Cfap206	1700003M02Rik|AU024269	cilia and flagella associated protein 206	protein-coding	0.065000	0.537313	-78(GCTTTTAAGAGC,+,0.00),-77(CTTTTAAGAGCA,+,0.00)
mm_125003.1	chr15	24945384	24945584	+	1	NA	NA	NA	468280	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.010000	0.472637	-60(GCCTTTAAGGCA,+,0.00)
mm_112734.1	chr13	19255468	19255668	+	1	NA	NA	NA	140245	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.502488	
mm_128186.1	chr15	34678784	34678984	-	1	NA	NA	NA	-178	NM_145469	223473	Mm.258402	NM_145469	ENSMUSG00000038879	Nipal2	9330161F08Rik|Npal2	NIPA-like domain containing 2	protein-coding	0.050000	0.582090	
mm_53023.1	chr6	124304559	124304759	+	1	NA	NA	NA	8	NM_053094	93671	Mm.37426	NM_053094	ENSMUSG00000008845	Cd163	CD163v2|CD163v3	CD163 antigen	protein-coding	0.015000	0.442786	
mm_73909.1	chr8	119575201	119575401	+	1	NA	NA	NA	66	NM_026648	68270	Mm.41977	NM_026648	ENSMUSG00000031831	Dnaaf1	4930457P18Rik|Lrrc50	dynein, axonemal assembly factor 1	protein-coding	0.115000	0.691542	
mm_74198.1	chr8	123805953	123806153	+	1	NA	NA	NA	57	NM_009003	19341	Mm.9221	NM_009003	ENSMUSG00000019478	Rab4a	AI848268|Rab4	RAB4A, member RAS oncogene family	protein-coding	0.145000	0.771144	
mm_152941.1	chr19	28863667	28863867	-	1	NA	NA	NA	28601	NM_009199	20510	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	0.040000	0.477612	
mm_67694.1	chr7	89518004	89518204	-	1	NA	NA	NA	-518	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.045000	0.552239	
mm_159517.1	chr4	60501824	60502024	-	1	NA	NA	NA	36	NM_001163011	17840	Mm.335875	NM_031188	ENSMUSG00000078683	Mup1	Ltn-1|Lvtn-1|Mup-1|Mup-a|Mup10|Mup7|Up-1	major urinary protein 1	protein-coding	0.010000	0.378109	-25(GAGTATATAAGA,-,0.00)
mm_733.1	chr1	43410848	43411048	+	1	NA	NA	NA	-34803	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.000000	0.338308	
mm_170938.1	chr2	47669572	47669772	-	1	NA	NA	NA	-1144437	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.075000	0.686567	
mm_32004.1	chr4	94614494	94614694	+	1	NA	NA	NA	103	NM_026319	67694	Mm.240619	NM_026319	ENSMUSG00000028576	Ift74	1700029H06Rik|Ccdc2|Cmg1|b2b796Clo	intraflagellar transport 74	protein-coding	0.085000	0.626866	
mm_40337.1	chr5	43948610	43948810	+	1	NA	NA	NA	33089	NM_008009	14181	Mm.46053	NM_008009	ENSMUSG00000048373	Fgfbp1	FGF-BP|FGF-BP1|FGFBP-1	fibroblast growth factor binding protein 1	protein-coding	0.015000	0.422886	
mm_3477.1	chr1	150105354	150105554	+	1	NA	NA	NA	5423	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.010000	0.482587	
mm_71215.1	chr8	40893603	40893803	+	1	NA	NA	NA	31336	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.000000	0.253731	
mm_106314.1	chr11	118302694	118302894	-	1	NA	NA	NA	-12550	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.030000	0.552239	33(TGATATAAAAGG,-,0.00)
mm_72350.1	chr8	79640107	79640307	+	1	NA	NA	NA	531	NM_001081164	73945	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.115000	0.671642	
mm_57121.1	chr6	122596794	122596994	-	1	NA	NA	NA	5550	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.020000	0.452736	
mm_107155.1	chr12	24572218	24572418	+	1	NA	NA	NA	31	NM_001161406	195733	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead-like 1 (Drosophila)	protein-coding	0.145000	0.761194	
mm_70354.1	chr8	5578220	5578420	+	1	NA	NA	NA	-473033	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.005000	0.373134	
mm_75991.1	chr8	72388860	72389060	-	1	NA	NA	NA	32514	NM_001122832	13859	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	0.000000	0.308458	
mm_77504.1	chr8	122698993	122699193	-	1	NA	NA	NA	16	NM_009824	12398	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0.035000	0.651741	
mm_149263.1	chr19	10577061	10577261	+	1	NA	NA	NA	4	NM_001282067	225912	Mm.252701	NM_201351	ENSMUSG00000034445	Cyb561a3	2310004G04Rik|Cybasc3|Lcytb	cytochrome b561 family, member A3	protein-coding	0.065000	0.552239	
mm_138518.1	chr17	35237873	35238073	+	1	NA	NA	NA	1377	NM_023179	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.025000	0.502488	
mm_111719.1	chr12	103730313	103730513	-	1	NA	NA	NA	7776	NM_009244	20701	Mm.439692	NM_009244	ENSMUSG00000071178	Serpina1b	D12Ucla2|Dom2|PI2|Spi1-2	serine (or cysteine) preptidase inhibitor, clade A, member 1B	protein-coding	0.040000	0.557214	
mm_87044.1	chr10	28791492	28791692	+	1	NA	NA	NA	123232	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.000000	0.417910	7(GCTCATATACCC,+,0.00)
mm_120219.1	chr14	62761670	62761870	+	1	NA	NA	NA	-658	NM_008715	18130	Mm.319684	NM_008715	ENSMUSG00000035161	Ints6	2900075H24Rik|AI480962|DICE1|Ddx26|HDB|Notch2l	integrator complex subunit 6	protein-coding	0.070000	0.646766	
mm_28323.1	chr3	89340063	89340263	-	1	NA	NA	NA	-2135	NM_007910	13639	Mm.16332	NM_007910	ENSMUSG00000028040	Efna4	EFL-4|Epl4|LERK-4	ephrin A4	protein-coding	0.010000	0.582090	
mm_89097.1	chr10	84517896	84518096	+	1	NA	NA	NA	15892	NM_175451	216197	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.010000	0.557214	
mm_17834.1	chr2	34291311	34291511	-	1	NA	NA	NA	80634	NM_001290576	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.000000	0.368159	
mm_74763.1	chr8	20902356	20902556	-	1	NA	NA	NA	-483	NM_001177471	100504014	Mm.490239	NM_001177471	ENSMUSG00000082976	Gm15056	Defb52|OTTMUSG00000018888	predicted gene 15056	protein-coding	0.005000	0.432836	
mm_120074.1	chr14	57423974	57424174	+	1	NA	NA	NA	3	NM_009376	21821	Mm.4653	NM_009376	ENSMUSG00000040040	Ift88	AW552028|Tg737|Tg737Rpw|TgN737Rpw|Ttc10|flexo|fxo|orpk|polaris	intraflagellar transport 88	protein-coding	0.105000	0.706468	
mm_47921.1	chr5	135008720	135008920	-	1	NA	NA	NA	-332	NM_001190437	68758	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.055000	0.577114	-41(TCTTTTAAGAGC,+,0.00),-40(CTTTTAAGAGCT,+,0.00)
mm_91464.1	chr10	34127868	34128068	-	1	NA	NA	NA	4	NM_175449	215900	Mm.34479	NM_175449	ENSMUSG00000046031	Fam26f	A630077B13Rik	family with sequence similarity 26, member F	protein-coding	0.015000	0.462687	
mm_105185.1	chr11	101972851	101973051	-	1	NA	NA	NA	-5936	NM_024449	74499	Mm.265602	NM_024449	ENSMUSG00000001494	Sost	5430411E23Rik	sclerostin	protein-coding	0.005000	0.417910	
mm_130541.1	chr15	98953431	98953631	-	1	NA	NA	NA	-30	NM_011653	22142	Mm.405359	NM_011653	ENSMUSG00000072235	Tuba1a	Tuba-1|Tuba1	tubulin, alpha 1A	protein-coding	0.065000	0.611940	-53(CTGTATATAAGG,-,0.00)
mm_118523.1	chr14	14718728	14718928	+	1	NA	NA	NA	15803	NM_001033270	218756	Mm.258893	NM_001033270	ENSMUSG00000021733	Slc4a7	E430014N10Rik|NBC3|NBCn1|NBCn1-G	solute carrier family 4, sodium bicarbonate cotransporter, member 7	protein-coding	0.020000	0.447761	
mm_142956.1	chr17	56120024	56120224	-	1	NA	NA	NA	1822	NM_029796	76905	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0.060000	0.611940	
mm_787.1	chr1	45332072	45332272	+	1	NA	NA	NA	20634	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.025000	0.462687	
mm_102371.1	chr11	58611389	58611589	-	1	NA	NA	NA	2003	NM_144544	78354	Mm.58038	NM_144544	ENSMUSG00000037145	2210407C18Rik	Ep1	RIKEN cDNA 2210407C18 gene	protein-coding	0.005000	0.562189	
mm_78761.1	chr9	43303184	43303384	+	1	NA	NA	NA	-7479	NM_023655	72169	Mm.273277	NM_023655	ENSMUSG00000032013	Trim29	1110047J21Rik|2810431N19Rik|4732461M22Rik|AI119726	tripartite motif-containing 29	protein-coding	0.010000	0.462687	
mm_172505.1	chr7	68249951	68250151	-	1	NA	NA	NA	14182	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.000000	0.462687	
mm_163564.1	chr13	25909973	25910173	-	1	NA	NA	NA	56243	NR_045062	100503530	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	OTTMUSG00000000620	predicted gene 11351	ncRNA	0.000000	0.388060	
mm_97009.1	chr11	70970089	70970289	+	1	NA	NA	NA	-11	NM_027186	69723	Mm.275691	NM_027186	ENSMUSG00000018449	Rpain	2400006N03Rik|Rip	RPA interacting protein	protein-coding	0.045000	0.582090	
mm_86011.1	chr9	112234505	112234705	-	1	NA	NA	NA	224	NR_015468	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA	0.050000	0.606965	
mm_167225.1	chr8	12672342	12672542	+	1	NA	NA	NA	-342	NM_198031	259279	Mm.142095	NM_198031	ENSMUSG00000000759	Tubgcp3	GCP3|Spc98p	tubulin, gamma complex associated protein 3	protein-coding	0.055000	0.577114	
mm_146957.1	chr18	33205038	33205238	-	1	NA	NA	NA	8724	NM_001347624	170459	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	0.015000	0.398010	
mm_90706.1	chr10	130542242	130542442	+	1	NA	NA	NA	-44963	NM_001103366	625131	Mm.469844	NM_001103366	ENSMUSG00000091511	Vmn2r87	EG625131	vomeronasal 2, receptor 87	protein-coding	0.035000	0.567164	
mm_50341.1	chr6	48537662	48537862	+	1	NA	NA	NA	193	NM_133764	76252	Mm.30214	NM_133764	ENSMUSG00000039347	Atp6v0e2	0610006O14Rik|NM9.2	ATPase, H+ transporting, lysosomal V0 subunit E2	protein-coding	0.060000	0.601990	
mm_72638.1	chr8	84699069	84699269	+	1	NA	NA	NA	-2288	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.040000	0.646766	
mm_101439.1	chr11	30149977	30150177	-	1	NA	NA	NA	48180	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.000000	0.323383	
mm_29143.1	chr3	105931161	105931361	-	1	NA	NA	NA	1403	NM_001033780	433638	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	0.010000	0.442786	
mm_139378.1	chr17	51834367	51834567	+	1	NA	NA	NA	-1177	NM_001163632	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.020000	0.383085	
mm_153917.1	chr19	47268694	47268894	-	1	NA	NA	NA	4795	NR_105961	102466782		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.050000	0.636816	
mm_7198.1	chr1	92996980	92997180	-	1	NA	NA	NA	-9254	NM_177587	208760	Mm.235537	NM_177587	ENSMUSG00000045091	Aqp12	AB084104|mAQP12	aquaporin 12	protein-coding	0.020000	0.542289	
mm_31802.1	chr4	64154283	64154483	+	1	NA	NA	NA	-107368	NM_011607	21923	Mm.980	NM_011607	ENSMUSG00000028364	Tnc	AI528729|C130033P17Rik|Hxb|TN|TN-C|Ten|cytotactin|tenascin-C	tenascin C	protein-coding	0.020000	0.487562	-27(CTATTTATACCC,+,0.00)
mm_166639.1	chr6	83248548	83248748	+	1	NA	NA	NA	11273	NM_001166067	232156	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	0.010000	0.417910	
mm_90418.1	chr10	127471733	127471933	+	1	NA	NA	NA	-29884	NM_177707	237611	Mm.32087	NM_177707	ENSMUSG00000040287	Stac3	9830125E18	SH3 and cysteine rich domain 3	protein-coding	0.035000	0.616915	
mm_36134.1	chr4	59336049	59336249	-	1	NA	NA	NA	76098	NR_105031	101055769	Mm.421401	NR_105031		Gm12596	OTTMUSG00000007649	predicted gene 12596	ncRNA	0.020000	0.497512	
mm_156537.1	chrX	151120781	151120981	+	1	NA	NA	NA	-24338	NR_028392	69499	Mm.8142	NM_175146	ENSMUSG00000025264	Tsr2	2310007F12Rik	TSR2 20S rRNA accumulation	protein-coding	0.010000	0.427861	
mm_108578.1	chr12	84996921	84997121	+	1	NA	NA	NA	700	NM_178363	56531	Mm.153183	NM_178363	ENSMUSG00000021244	Ylpm1	A930013E17Rik|ZAP|Zap3	YLP motif containing 1	protein-coding	0.020000	0.601990	
mm_3902.1	chr1	161747446	161747646	+	1	NA	NA	NA	40949	NM_001205243	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.010000	0.497512	
mm_86654.1	chr10	17724168	17724368	+	1	NA	NA	NA	1040	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.045000	0.646766	
mm_2871.1	chr1	131760223	131760423	+	1	NA	NA	NA	16301	NM_177243	320718	Mm.482704	NM_177243	ENSMUSG00000042268	Slc26a9	E030002L01Rik	solute carrier family 26, member 9	protein-coding	0.020000	0.497512	
mm_159889.1	chr6	28449239	28449439	-	1	NA	NA	NA	1	NM_001159925	18506	Mm.8026	NM_011038	ENSMUSG00000029706	Pax4	Pax-4	paired box 4	protein-coding	0.000000	0.611940	
mm_74894.1	chr8	25118987	25119187	-	1	NA	NA	NA	-17276	NM_031257	83436	Mm.261122	NM_031257	ENSMUSG00000031557	Plekha2	6430512N22Rik|AI851530|AU041791|TAPP2|W91773	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2	protein-coding	0.005000	0.532338	
mm_69079.1	chr7	127003675	127003875	-	1	NA	NA	NA	10819	NM_080638	78388	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0.005000	0.487562	
mm_51087.1	chr6	67037100	67037300	+	1	NA	NA	NA	207	NM_007836	13197	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.100000	0.686567	
mm_96454.1	chr11	67586433	67586633	+	1	NA	NA	NA	33	NM_001109657	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.005000	0.467662	
mm_150984.1	chr19	46515638	46515838	+	1	NA	NA	NA	14090	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.035000	0.482587	
mm_147877.1	chr18	64516419	64516619	-	1	NA	NA	NA	38	NM_027350	70223	Mm.29192	NM_027350	ENSMUSG00000024587	Nars	3010001M15Rik|AA960128|ASNRS|C78150	asparaginyl-tRNA synthetase	protein-coding	0.075000	0.601990	
mm_28070.1	chr3	84270688	84270888	-	1	NA	NA	NA	-5	NM_001271725	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.000000	0.482587	
mm_74382.1	chr8	128685818	128686018	+	1	NA	NA	NA	264	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.170000	0.751244	
mm_28537.1	chr3	92752238	92752438	-	1	NA	NA	NA	0	NM_025413	66195	Mm.158107	NM_025413	ENSMUSG00000027919	Lce1g	1110058A15Rik|AI604448	late cornified envelope 1G	protein-coding	0.005000	0.507463	
mm_61569.1	chr7	79710316	79710516	+	1	NA	NA	NA	3770	NM_010626	16576	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0.145000	0.681592	
mm_113309.1	chr13	30753351	30753551	+	1	NA	NA	NA	4218	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.010000	0.502488	
mm_1249.1	chr1	62810029	62810229	+	1	NA	NA	NA	-15397	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.000000	0.502488	
mm_8775.1	chr1	161071114	161071314	-	1	NA	NA	NA	447	NR_131028	70454	Mm.248212	NM_027429	ENSMUSG00000026708	Cenpl	2610300B10Rik|AW121806|AW550697|CENP-L	centromere protein L	protein-coding	0.045000	0.492537	
mm_35709.1	chr4	44168264	44168464	-	1	NA	NA	NA	-81	NM_001038993	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.135000	0.761194	
mm_56980.1	chr6	120357329	120357529	-	1	NA	NA	NA	40	NM_026028	67200	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	0.050000	0.522388	
mm_47211.1	chr5	121009288	121009488	-	1	NA	NA	NA	150	NM_011286	19894	Mm.181166	NM_011286	ENSMUSG00000029608	Rph3a	2900002P20Rik|AU022689|AW108370	rabphilin 3A	protein-coding	0.030000	0.542289	
mm_105386.1	chr11	103363274	103363474	-	1	NA	NA	NA	318	NM_183288	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.085000	0.641791	
mm_68409.1	chr7	109637293	109637493	-	1	NA	NA	NA	-20246	NM_029811	76954	Mm.252009	NM_029811	ENSMUSG00000031024	St5	2010004M01Rik|2610305K15Rik	suppression of tumorigenicity 5	protein-coding	0.005000	0.507463	
mm_139343.1	chr17	50239037	50239237	+	1	NA	NA	NA	-71	NR_131975	446210	Mm.378184	NM_001004437	ENSMUSG00000067103	AY702103	STDP2	cDNA sequence AY702103	ncRNA	0.005000	0.477612	-85(CACTTTATAAAG,-,0.00),-83(CTTTATAAAGTT,+,0.00)
mm_10597.1	chr2	18676990	18677190	+	1	NA	NA	NA	72	NM_007552	12151	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	0.110000	0.671642	-65(TAGTATTAAAGG,-,0.00)
mm_102374.1	chr11	58613388	58613588	-	1	NA	NA	NA	4	NM_144544	78354	Mm.58038	NM_144544	ENSMUSG00000037145	2210407C18Rik	Ep1	RIKEN cDNA 2210407C18 gene	protein-coding	0.010000	0.482587	-34(GGCTATAAAAGT,-,0.00)
mm_94310.1	chr11	4218167	4218367	+	1	NA	NA	NA	16	NM_028022	71962	Mm.7852	NM_028022	ENSMUSG00000020424	Gatsl3	2410008K03Rik	GATS protein-like 3	protein-coding	0.100000	0.676617	
mm_38955.1	chr4	150570187	150570387	-	1	NA	NA	NA	81887	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.030000	0.432836	
mm_62517.1	chr7	102225718	102225918	+	1	NA	NA	NA	2790	NR_111937	233575	Mm.302013	NM_145583	ENSMUSG00000030990	Pgap2	1810006G21Rik|C76649|Frag1	post-GPI attachment to proteins 2	protein-coding	0.015000	0.587065	
mm_73802.1	chr8	117275106	117275306	+	1	NA	NA	NA	18187	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.010000	0.452736	
mm_91247.1	chr10	22731218	22731418	-	1	NA	NA	NA	129	NM_011603	237336	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.105000	0.676617	
mm_84088.1	chr9	58204279	58204479	-	1	NA	NA	NA	-60	NM_001161541	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.050000	0.542289	
mm_164569.1	chr17	21423148	21423348	+	1	NA	NA	NA	21	NM_011760	22712	Mm.12916	NM_011760	ENSMUSG00000023882	Zfp54	2810034D10Rik|KRAB10|Zfp-54|Zfp76|mszf83	zinc finger protein 54	protein-coding	0.020000	0.542289	
mm_13816.1	chr2	119237263	119237463	+	1	NA	NA	NA	3	NM_016907	20732	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	0.105000	0.686567	
mm_140081.1	chr17	75178854	75179054	+	1	NA	NA	NA	173	NM_001331235	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.010000	0.398010	
mm_86903.1	chr10	22343308	22343508	+	1	NA	NA	NA	-18486	NM_020030	56554	Mm.458004	NM_020030	ENSMUSG00000078452	Raet1d	RAE-1delta	retinoic acid early transcript delta	protein-coding	0.015000	0.447761	
mm_76057.1	chr8	77724246	77724446	-	1	NA	NA	NA	106	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	0.045000	0.592040	
mm_134612.1	chr16	20803159	20803359	-	1	NA	NA	NA	-68748	NM_009379	21832	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.010000	0.517413	
mm_139277.1	chr17	48247648	48247848	+	1	NA	NA	NA	19	NM_021407	58218	Mm.302438	NM_021407	ENSMUSG00000041754	Trem3	BB134760	triggering receptor expressed on myeloid cells 3	protein-coding	0.010000	0.532338	
mm_69497.1	chr7	134225082	134225282	-	1	NA	NA	NA	-85	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.115000	0.656716	
mm_35806.1	chr4	46649964	46650164	-	1	NA	NA	NA	135	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	0.085000	0.716418	
mm_111295.1	chr12	85475855	85476055	-	1	NA	NA	NA	2054	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.015000	0.562189	
mm_108306.1	chr12	79383721	79383921	+	1	NA	NA	NA	86470	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.010000	0.512438	
mm_18274.1	chr2	52372443	52372643	-	1	NA	NA	NA	-33745	NM_010889	17996	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	0.015000	0.447761	
mm_10154.1	chr2	4389361	4389561	+	1	NA	NA	NA	-11515	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.005000	0.522388	
mm_21865.1	chr2	165898870	165899070	-	1	NA	NA	NA	-14132	NM_001252587	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.030000	0.611940	
mm_8823.1	chr1	162387116	162387316	-	1	NA	NA	NA	90814	NM_001038619	103967	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|mKIAA0820	dynamin 3	protein-coding	0.010000	0.338308	
mm_27144.1	chr3	32736681	32736881	-	1	NA	NA	NA	-26	NM_029017	74600	Mm.288960	NM_029017	ENSMUSG00000037531	Mrpl47	4833424P18Rik|CGI-204|ENSMUSG00000051761|Gm9859|L47mt|MRP-L47|MTF/L47|NCM1	mitochondrial ribosomal protein L47	protein-coding	0.050000	0.557214	
mm_79139.1	chr9	47644344	47644544	+	1	NA	NA	NA	114092	NM_018770	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.005000	0.388060	80(TCCCTTTAAAGG,-,0.00),81(CCCTTTAAAGGA,+,0.00),81(CCCTTTAAAGGA,-,0.00),82(CCTTTAAAGGAA,+,0.00)
mm_51723.1	chr6	86946770	86946970	+	1	NA	NA	NA	-62966	NM_001170591	56748	Mm.23809	NM_020045	ENSMUSG00000029993	Nfu1	0610006G17Rik|CGI-33|Hirip5	NFU1 iron-sulfur cluster scaffold	protein-coding	0.020000	0.417910	
mm_76200.1	chr8	82774076	82774276	-	1	NA	NA	NA	-50	NM_145600	30932	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	0.080000	0.621891	
mm_24107.1	chr3	88142306	88142506	+	1	NA	NA	NA	34	NM_001310593	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.085000	0.646766	
mm_341.1	chr1	30873906	30874106	+	1	NA	NA	NA	-10750	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding	0.110000	0.656716	
mm_17284.1	chr2	26140217	26140417	-	1	NA	NA	NA	189	NM_001256521	109299	Mm.389259	NM_001256521		C330006A16Rik	AI551216	RIKEN cDNA C330006A16 gene	protein-coding	0.125000	0.751244	
mm_86339.1	chr9	123215934	123216134	-	1	NA	NA	NA	4	NM_133974	109332	Mm.27519	NM_133974	ENSMUSG00000035498	Cdcp1	9030022E12Rik|AA409659|E030027H19Rik	CUB domain containing protein 1	protein-coding	0.085000	0.706468	
mm_93090.1	chr10	89621347	89621547	-	1	NA	NA	NA	-198	NM_182959	216227	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	0.015000	0.547264	
mm_112401.1	chr13	3538031	3538231	+	1	NA	NA	NA	56	NM_008112	14569	Mm.153226	NM_008112	ENSMUSG00000021218	Gdi2	GDI-B|GDIB|Gdi3	guanosine diphosphate (GDP) dissociation inhibitor 2	protein-coding	0.105000	0.721393	
mm_106556.1	chr11	120624886	120625086	-	1	NA	NA	NA	16	NM_153056	209011	Mm.292957	NM_153056	ENSMUSG00000025138	Sirt7	-	sirtuin 7	protein-coding	0.110000	0.701493	
mm_132143.1	chr16	32003143	32003343	+	1	NA	NA	NA	44	NM_177103	320213	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	0.075000	0.631841	
mm_142271.1	chr17	39847671	39847871	-	1	NA	NA	NA	4774	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.070000	0.542289	
mm_39891.1	chr5	31180096	31180296	+	1	NA	NA	NA	-52	NM_027901	71752	Mm.271923	NM_027901	ENSMUSG00000101678	Gtf3c2	1300004C11Rik|2610510G03Rik|AI225816|AU041069|TFIIIC110|mKIAA0011	general transcription factor IIIC, polypeptide 2, beta	protein-coding	0.085000	0.641791	
mm_51012.1	chr6	65022027	65022227	+	1	NA	NA	NA	-20540	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.015000	0.492537	
mm_65822.1	chr7	29166803	29167003	-	1	NA	NA	NA	1744	NM_182927	101809	Mm.377262	NM_182927	ENSMUSG00000037239	Spred3	AW047143|D130060H24Rik|Spred-3	sprouty-related, EVH1 domain containing 3	protein-coding	0.010000	0.288557	
mm_1905.1	chr1	85851348	85851548	+	1	NA	NA	NA	-43062	NM_022417	64294	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.005000	0.328358	-68(TGTTATAAAGGG,-,0.00)
mm_104774.1	chr11	98545833	98546033	-	1	NA	NA	NA	98	NM_011771	22780	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.135000	0.701493	-30(GTGCTTTAAAGC,-,0.00),-28(GCTTTAAAGCGG,+,0.00)
mm_61166.1	chr7	59228941	59229141	+	1	NA	NA	NA	289	NM_011668	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|mKIAA4216	ubiquitin protein ligase E3A	protein-coding	0.115000	0.656716	
mm_130684.1	chr15	100681477	100681677	-	1	NA	NA	NA	6343	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.005000	0.547264	
mm_127643.1	chr15	102483122	102483322	+	1	NA	NA	NA	12590	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.015000	0.502488	
mm_103904.1	chr11	83578324	83578524	-	1	NA	NA	NA	212	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.005000	0.502488	
mm_128681.1	chr15	60824765	60824965	-	1	NA	NA	NA	215	NM_001162926	399603	Mm.411968	NM_207269	ENSMUSG00000072568	Fam84b	BF642811|D330050I23Rik	family with sequence similarity 84, member B	protein-coding	0.090000	0.666667	-79(CTCTTTAAATGC,-,0.00)
mm_41426.1	chr5	90892528	90892728	+	1	NA	NA	NA	1383	NM_008176	14825	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.010000	0.348259	
mm_139155.1	chr17	47540394	47540594	+	1	NA	NA	NA	35443	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.005000	0.427861	
mm_29198.1	chr3	106766345	106766545	-	1	NA	NA	NA	23704	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.000000	0.398010	
mm_149443.1	chr19	11481141	11481341	+	1	NA	NA	NA	-10797	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.010000	0.273632	
mm_11266.1	chr2	30018765	30018965	+	1	NA	NA	NA	22915	NR_105963	102465603		NR_105963	ENSMUSG00000098453	Mir6997	Gm27310|mmu-mir-6997	microRNA 6997	ncRNA	0.005000	0.378109	-49(GCATTTAAAGGC,+,0.00),-49(GCATTTAAAGGC,-,0.00)
mm_35114.1	chr4	10797697	10797897	-	1	NA	NA	NA	5	NR_045185	73624	Mm.67392	NR_045185	ENSMUSG00000086080	1700123O12Rik	-	RIKEN cDNA 1700123O12 gene	ncRNA	0.005000	0.427861	34(GCTTTTCTAGGC,+,0.00)
mm_30697.1	chr4	11694706	11694906	+	1	NA	NA	NA	-9641	NM_010276	14579	Mm.247486	NM_010276	ENSMUSG00000028214	Gem	AV020497	GTP binding protein (gene overexpressed in skeletal muscle)	protein-coding	0.020000	0.547264	
mm_4487.1	chr1	173630948	173631148	+	1	NA	NA	NA	189	NM_175026	236312	Mm.447	NM_175026	ENSMUSG00000043263	Ifi209	4930422C14|AI447904|Ifix|Pyhin-1|Pyhin1	interferon activated gene 209	protein-coding	0.000000	0.452736	
mm_162809.1	chr10	79544232	79544432	-	1	NA	NA	NA	-10545	NM_001302389	50784	Mm.28873	NM_015817	ENSMUSG00000052151	Plpp2	Lpp2|PAP2-G|PAP2-gamma|PAP2c|Ppap2c	phospholipid phosphatase 2	protein-coding	0.005000	0.606965	
mm_11389.1	chr2	31446668	31446868	+	1	NA	NA	NA	-23502	NM_007494	11898	Mm.3217	NM_007494	ENSMUSG00000076441	Ass1	AA408052|ASS|Ass-1|fold	argininosuccinate synthetase 1	protein-coding	0.005000	0.512438	
mm_44469.1	chr5	23402477	23402677	-	1	NA	NA	NA	31776	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.005000	0.358209	
mm_54065.1	chr6	13872211	13872411	-	1	NA	NA	NA	742	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0.025000	0.412935	-49(GTGTTTAAAAGG,-,0.00)
mm_149155.1	chr19	9015421	9015621	+	1	NA	NA	NA	-2383	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.020000	0.432836	
mm_144562.1	chr18	31759890	31760090	+	1	NA	NA	NA	166	NM_153515	225339	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0.090000	0.676617	
mm_97229.1	chr11	75651477	75651677	+	1	NA	NA	NA	68	NM_008659	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.125000	0.746269	
mm_141306.1	chr17	28224060	28224260	-	1	NA	NA	NA	-8594	NM_011145	19015	Mm.328914	NM_011145	ENSMUSG00000002250	Ppard	NUC-1|NUC1|Nr1c2|PPAR-beta|PPAR-delta|PPAR[b]|PPARdelta|Pparb|Pparb/d	peroxisome proliferator activator receptor delta	protein-coding	0.065000	0.701493	
mm_13316.1	chr2	102659123	102659323	+	1	NA	NA	NA	540	NM_001077514	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.100000	0.701493	
mm_63839.1	chr7	135650249	135650449	+	1	NA	NA	NA	-1550	NM_001316681	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.010000	0.522388	
mm_97856.1	chr11	83078242	83078442	+	1	NA	NA	NA	13230	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.015000	0.522388	
mm_51343.1	chr6	72549158	72549358	+	1	NA	NA	NA	-15	NM_001042534	12332	Mm.18626	NM_007599	ENSMUSG00000056737	Capg	gCap39|mbh1	capping protein (actin filament), gelsolin-like	protein-coding	0.020000	0.557214	
mm_163601.1	chr13	46669413	46669613	+	1	NA	NA	NA	-9	NM_001033192	97863	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	0.130000	0.756219	
mm_31568.1	chr4	57594304	57594504	+	1	NA	NA	NA	26156	NM_172868	242481	Mm.331630	NM_172868	ENSMUSG00000090053	Palm2	53-H12|B130066I24|R75368|pEN70	paralemmin 2	protein-coding	0.010000	0.422886	-49(GTTTTTAAAGAG,+,0.00)
mm_95310.1	chr11	46372793	46372993	+	1	NA	NA	NA	16622	NM_001281968	16428	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	0.005000	0.482587	-29(TCTTATAGAGTG,+,0.00)
mm_66949.1	chr7	62046147	62046347	-	1	NA	NA	NA	1	NR_037288	100526527		NR_037288	ENSMUSG00000093108	Mir344f	mir-344f|mmu-mir-344f	microRNA Mir344f	ncRNA	0.000000	0.472637	
mm_127992.1	chr15	12622239	12622439	-	1	NA	NA	NA	-29783	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.015000	0.572139	
mm_44109.1	chr5	149369031	149369231	+	1	NA	NA	NA	-42675	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.025000	0.472637	
mm_78957.1	chr9	45138834	45139034	+	1	NA	NA	NA	-108	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.100000	0.716418	
mm_114425.1	chr13	64432502	64432702	+	1	NA	NA	NA	49	NM_053180	105278	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	0.085000	0.611940	
mm_111025.1	chr12	79103832	79104032	-	1	NA	NA	NA	7	NR_110486	321017	Mm.311575	NR_110486		9230116L04Rik	-	RIKEN cDNA 9230116L04 gene	ncRNA	0.010000	0.542289	
mm_89990.1	chr10	112002378	112002578	+	1	NA	NA	NA	-5214	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.010000	0.552239	
mm_165506.1	chr2	167777902	167778102	-	1	NA	NA	NA	86825	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.030000	0.557214	
mm_95593.1	chr11	53332289	53332489	+	1	NA	NA	NA	7700	NM_026479	67966	Mm.288072	NM_026479	ENSMUSG00000018239	Zcchc10	2410141K03Rik|AA675321|D11Ertd416e	zinc finger, CCHC domain containing 10	protein-coding	0.025000	0.522388	
mm_84106.1	chr9	58312897	58313097	-	1	NA	NA	NA	215	NM_010729	16949	Mm.250492	NM_010729	ENSMUSG00000032334	Loxl1	Loxl	lysyl oxidase-like 1	protein-coding	0.065000	0.671642	
mm_77511.1	chr8	122893508	122893708	-	1	NA	NA	NA	45234	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.055000	0.597015	-22(TCCCAGAAAAGG,-,0.00)
mm_21870.1	chr2	165976912	165977112	-	1	NA	NA	NA	-15625	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.005000	0.427861	
mm_162816.1	chr10	79873973	79874173	+	1	NA	NA	NA	561	NM_181681	216152	Mm.29678	NM_181681	ENSMUSG00000035835	Plppr3	Lppr3|Prg2	phospholipid phosphatase related 3	protein-coding	0.050000	0.557214	
mm_151665.1	chr19	4163213	4163413	-	1	NA	NA	NA	-68	NM_021485	58988	Mm.271937	NM_021485	ENSMUSG00000024830	Rps6kb2	70kDa|S6K2	ribosomal protein S6 kinase, polypeptide 2	protein-coding	0.085000	0.611940	
mm_41898.1	chr5	105519353	105519553	+	1	NA	NA	NA	-18	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.155000	0.761194	
mm_5247.1	chr1	16519981	16520181	-	1	NA	NA	NA	-779	NM_001111272	29819	Mm.216257	NM_025303	ENSMUSG00000025920	Stau2	-	staufen (RNA binding protein) homolog 2 (Drosophila)	protein-coding	0.095000	0.661692	
mm_21631.1	chr2	164277221	164277421	-	1	NA	NA	NA	986	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.015000	0.437811	
mm_167904.1	chrX	77837850	77838050	-	1	NA	NA	NA	15550	NM_017471	54192	Mm.8034	NM_017471	ENSMUSG00000000003	Pbsn	PB|Prbs	probasin	protein-coding	0.010000	0.313433	
mm_82101.1	chr9	123061708	123061908	+	1	NA	NA	NA	27067	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.015000	0.482587	
mm_52647.1	chr6	117179122	117179322	+	1	NA	NA	NA	10687	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.030000	0.482587	
mm_117192.1	chr13	63566106	63566306	-	1	NA	NA	NA	-471	NM_008957	19206	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes	patched 1	protein-coding	0.065000	0.587065	
mm_43668.1	chr5	138757777	138757977	+	1	NA	NA	NA	2796	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.035000	0.547264	
mm_161889.1	chr18	39486915	39487115	-	1	NA	NA	NA	230	NM_008173	14815	Mm.129481	NM_008173	ENSMUSG00000024431	Nr3c1	GR|Grl-1|Grl1	nuclear receptor subfamily 3, group C, member 1	protein-coding	0.020000	0.552239	
mm_72543.1	chr8	83997416	83997616	+	1	NA	NA	NA	-156	NM_001081415	666704	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.095000	0.567164	
mm_48192.1	chr5	137529584	137529784	-	1	NA	NA	NA	-90	NR_105846	102465227		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0.020000	0.597015	
mm_38704.1	chr4	145215279	145215479	-	1	NA	NA	NA	-20374	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.010000	0.527363	
mm_78605.1	chr9	37539172	37539372	+	1	NA	NA	NA	17	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.025000	0.537313	
mm_75689.1	chr8	68205919	68206119	-	1	NA	NA	NA	-70509	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.030000	0.462687	
mm_146103.1	chr18	74216005	74216205	+	1	NA	NA	NA	-107	NM_028868	74322	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.120000	0.621891	
mm_55354.1	chr6	56888605	56888805	-	1	NA	NA	NA	13181	NM_001252374	107569	Mm.158936	NM_026004	ENSMUSG00000029780	Nt5c3	1600024P05Rik|2610206B05Rik|3110004A18Rik|AI842776|Nt5c3a|Nt5y|PN-1|PN-I|PSN1|UMPH|Umph-1|Umph1|cN-III|lupin|p36	5'-nucleotidase, cytosolic III	protein-coding	0.030000	0.497512	
mm_62938.1	chr7	118912529	118912729	+	1	NA	NA	NA	-56631	NM_023197	66356	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0.010000	0.547264	75(CCCTTTAGATGC,+,0.00)
mm_49546.1	chr6	30460896	30461096	+	1	NA	NA	NA	11	NR_131049	69337	Mm.396168	NR_131049	ENSMUSG00000085470	1700012C14Rik	-	RIKEN cDNA 1700012C14 gene	ncRNA	0.035000	0.537313	
mm_12472.1	chr2	71499494	71499694	+	1	NA	NA	NA	-29851	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.010000	0.467662	
mm_24651.1	chr3	94392645	94392845	+	1	NA	NA	NA	-6474	NM_177250	320747	Mm.213001	NM_177250	ENSMUSG00000044505	Lingo4	A530050P17Rik|LERN4|Lrrn6d	leucine rich repeat and Ig domain containing 4	protein-coding	0.010000	0.482587	
mm_120394.1	chr14	64652412	64652612	+	1	NA	NA	NA	-19	NM_001081177	16554	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.100000	0.696517	
mm_152302.1	chr19	9085246	9085446	-	1	NA	NA	NA	2610	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.010000	0.522388	
mm_97027.1	chr11	72207479	72207679	+	1	NA	NA	NA	25	NM_026559	52700	Mm.27670	NM_026559	ENSMUSG00000020803	Txndc17	4831443O22Rik|D11Ertd672e|TRP14|Txnl5	thioredoxin domain containing 17	protein-coding	0.070000	0.651741	
mm_28906.1	chr3	98580453	98580653	-	1	NA	NA	NA	-16515	NM_008294	15495	Mm.14309	NM_008294	ENSMUSG00000095143	Hsd3b4	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	protein-coding	0.030000	0.477612	
mm_58090.1	chr6	137487119	137487319	-	1	NA	NA	NA	32676	NM_001271589	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.000000	0.313433	
mm_155429.1	chrX	73492876	73493076	+	1	NA	NA	NA	9375	NM_007542	12111	Mm.2608	NM_007542	ENSMUSG00000031375	Bgn	BG|DSPG1|PG-S1|PGI|SLRR1A	biglycan	protein-coding	0.010000	0.522388	
mm_83224.1	chr9	42264112	42264312	-	1	NA	NA	NA	88	NM_172769	235293	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	0.120000	0.731343	
mm_52274.1	chr6	108658562	108658762	+	1	NA	NA	NA	-1967	NM_011498	20893	Mm.2436	NM_011498	ENSMUSG00000030103	Bhlhe40	Bhlhb2|C130042M06Rik|CR8|Clast5|Dec1|Sharp2|Stra13|Stra14	basic helix-loop-helix family, member e40	protein-coding	0.030000	0.552239	
mm_132835.1	chr16	45535231	45535431	+	1	NA	NA	NA	65	NM_198106	208169	Mm.277437	NM_198106	ENSMUSG00000033210	Slc9c1	Gm610|NHE-10|Slc9a10|sNHE|spermNHE	solute carrier family 9, subfamily C (Na+-transporting carboxylic acid decarboxylase), member 1	protein-coding	0.015000	0.492537	
mm_56279.1	chr6	91116916	91117116	-	1	NA	NA	NA	-190	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.080000	0.656716	
mm_108090.1	chr12	74284251	74284451	+	1	NA	NA	NA	75	NR_030735	74284	Mm.287421	NR_030733	ENSMUSG00000071265	1700086L19Rik	1700006L05Rik|AU016007	RIKEN cDNA 1700086L19 gene	ncRNA	0.125000	0.651741	
mm_85701.1	chr9	108104788	108104988	-	1	NA	NA	NA	-10408	NM_146226	235606	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0.040000	0.641791	
mm_56826.1	chr6	117173563	117173763	-	1	NA	NA	NA	5128	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.025000	0.562189	
mm_134861.1	chr16	28446706	28446906	-	1	NA	NA	NA	-731	NM_001276420	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.110000	0.766169	
mm_68156.1	chr7	102250486	102250686	-	1	NA	NA	NA	-468	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.030000	0.666667	
mm_114004.1	chr13	52591734	52591934	+	1	NA	NA	NA	-5048	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.000000	0.477612	-46(TCCTTTTAAAGA,-,0.00),-45(CCTTTTAAAGAG,+,0.00)
mm_107811.1	chr12	65075500	65075700	+	1	NA	NA	NA	-6	NM_178912	104806	Mm.374847	NM_178912	ENSMUSG00000055884	Fancm	AI427100|C730036B14Rik|D12Ertd364e	Fanconi anemia, complementation group M	protein-coding	0.115000	0.646766	
mm_167561.1	chr9	38972273	38972473	+	1	NA	NA	NA	-3305	NM_146441	258433	Mm.271361	NM_146441	ENSMUSG00000058515	Olfr933	MOR171-22	olfactory receptor 933	protein-coding	0.005000	0.303483	
mm_48911.1	chr6	3993909	3994109	+	1	NA	NA	NA	-3	NM_010314	14699	Mm.95398	NM_010314	ENSMUSG00000029663	Gngt1	G(y)1|Gng1	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1	protein-coding	0.000000	0.422886	-32(GCTTTAAAATCC,+,0.00)
mm_83213.1	chr9	42097882	42098082	-	1	NA	NA	NA	26307	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.010000	0.527363	
mm_60572.1	chr7	44481472	44481672	+	1	NA	NA	NA	-2945	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.497512	
mm_43868.1	chr5	143503456	143503656	+	1	NA	NA	NA	24437	NM_009007	19353	Mm.292510	NM_009007	ENSMUSG00000001847	Rac1	AL023026|D5Ertd559e	RAS-related C3 botulinum substrate 1	protein-coding	0.005000	0.363184	
mm_45507.1	chr5	72503964	72504164	-	1	NA	NA	NA	144	NM_016869	53419	Mm.332425	NM_016869	ENSMUSG00000005220	Corin	AV273130|Lrp4	corin	protein-coding	0.080000	0.681592	
mm_95204.1	chr11	43528678	43528878	+	1	NA	NA	NA	29	NM_001045530	380694	Mm.247595	NM_001045530	ENSMUSG00000044707	Ccnjl	Gm877	cyclin J-like	protein-coding	0.165000	0.820896	
mm_27021.1	chr3	26046207	26046407	-	1	NA	NA	NA	107000	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.373134	
mm_69646.1	chr7	139020850	139021050	-	1	NA	NA	NA	-65051	NM_011993	26757	Mm.250414	NM_011993	ENSMUSG00000025478	Dpysl4	AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4	dihydropyrimidinase-like 4	protein-coding	0.045000	0.567164	
mm_118076.1	chr13	103047062	103047262	-	1	NA	NA	NA	286907	NR_130171	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.005000	0.378109	
mm_133830.1	chr16	95900419	95900619	+	1	NA	NA	NA	-1806	NR_040485	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.030000	0.542289	
mm_79193.1	chr9	48452241	48452441	+	1	NA	NA	NA	-2003	NR_026561	667933	Mm.491076	NR_026561		Gm8884	EG667933	predicted gene 8884	ncRNA	0.025000	0.512438	-84(TCTTAAAAAGGC,+,0.00),38(CCTTAAAGAGGC,+,0.00)
mm_19501.1	chr2	93462312	93462512	-	1	NA	NA	NA	90	NM_001271430	12521	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.070000	0.651741	
mm_123517.1	chr14	66280873	66281073	-	1	NA	NA	NA	79	NM_172498	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.070000	0.661692	-95(CACCCTTTAAGG,-,0.00),-93(CCCTTTAAGGAA,+,0.00)
mm_57319.1	chr6	124732310	124732510	-	1	NA	NA	NA	744	NM_013545	15170	Mm.271799	NM_013545	ENSMUSG00000004266	Ptpn6	70Z-SHP|Hcph|PTPTY-42|Ptp1C|SH-PTP1|SHP-1|hcp|me	protein tyrosine phosphatase, non-receptor type 6	protein-coding	0.045000	0.562189	
mm_3069.1	chr1	134189036	134189236	+	1	NA	NA	NA	-4312	NM_016749	53311	Mm.379067	NM_016749	ENSMUSG00000042451	Mybph	AI385643|MyBP-H	myosin binding protein H	protein-coding	0.020000	0.507463	
mm_81778.1	chr9	114688727	114688927	+	1	NA	NA	NA	-4	NM_146229	235661	Mm.128627	NM_146229	ENSMUSG00000032435	Dync1li1	1110053F02Rik|Dnclic1|LIC-1	dynein cytoplasmic 1 light intermediate chain 1	protein-coding	0.140000	0.721393	
mm_84684.1	chr9	72111099	72111299	-	1	NA	NA	NA	2	NM_001253862	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.130000	0.721393	
mm_76826.1	chr8	104624156	104624356	-	1	NA	NA	NA	140	NM_007663	12556	Mm.19423	NM_007663	ENSMUSG00000031881	Cdh16	-	cadherin 16	protein-coding	0.025000	0.601990	
mm_575.1	chr1	38987717	38987917	+	1	NA	NA	NA	3	NM_026850	68833	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	0.090000	0.691542	
mm_88009.1	chr10	67097939	67098139	+	1	NA	NA	NA	-1051	NM_178606	28193	Mm.41272	NM_178606	ENSMUSG00000019873	Reep3	D10Ucla1	receptor accessory protein 3	protein-coding	0.030000	0.442786	
mm_108682.1	chr12	86734299	86734499	+	1	NA	NA	NA	30	NM_001195767	627607	Mm.341880	NM_001195767	ENSMUSG00000059114	Lrrc74a	EG627607|Gm6772|Lrrc74	leucine rich repeat containing 74A	protein-coding	0.025000	0.487562	
mm_35669.1	chr4	43562416	43562616	-	1	NA	NA	NA	67	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.060000	0.557214	79(GCGTTTAAAAGG,-,0.00)
mm_114217.1	chr13	56372534	56372734	+	1	NA	NA	NA	9734	NR_046061	100038494	Mm.370447	NR_046061		Gm10782	ENSMUSG00000074885	predicted gene 10782	ncRNA	0.025000	0.492537	
mm_143783.1	chr17	81730891	81731091	-	1	NA	NA	NA	7396	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.015000	0.472637	
mm_45123.1	chr5	46007450	46007650	-	1	NA	NA	NA	-75141	NR_110478	78106	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	0.015000	0.457711	-92(CCTCTTAAACTG,+,0.00)
mm_137746.1	chr17	29381652	29381852	+	1	NA	NA	NA	20838	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.015000	0.552239	
mm_11350.1	chr2	30845364	30845564	+	1	NA	NA	NA	97	NM_009116	20204	Mm.1802	NM_009116	ENSMUSG00000039476	Prrx2	Prx2|S8	paired related homeobox 2	protein-coding	0.130000	0.756219	
mm_58021.1	chr6	136661647	136661847	-	1	NA	NA	NA	146	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.070000	0.636816	
mm_86834.1	chr10	21295900	21296100	+	1	NA	NA	NA	21	NM_001145209	56422	Mm.25527	NM_019702	ENSMUSG00000019977	Hbs1l	2810035F15Rik|AI326327|eRFS	Hbs1-like (S. cerevisiae)	protein-coding	0.155000	0.701493	
mm_155090.1	chrX	48146371	48146571	+	1	NA	NA	NA	35	NM_028773	74131	Mm.276131	NM_028773	ENSMUSG00000031101	Sash3	1200013B08Rik|AW413946|SLY1	SAM and SH3 domain containing 3	protein-coding	0.015000	0.582090	
mm_160223.1	chr7	101838112	101838312	-	1	NA	NA	NA	14	NM_010567	16332	Mm.476000	NM_010567	ENSMUSG00000032737	Inppl1	51C|SHIP2	inositol polyphosphate phosphatase-like 1	protein-coding	0.065000	0.636816	
mm_59244.1	chr7	24784388	24784588	+	1	NA	NA	NA	7284	NM_007675	26366	Mm.30300	NM_007675	ENSMUSG00000054169	Ceacam10	Bgp3|Cea10	carcinoembryonic antigen-related cell adhesion molecule 10	protein-coding	0.005000	0.393035	
mm_51467.1	chr6	82946811	82947011	+	1	NA	NA	NA	-11	NM_033079	110958	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	0.035000	0.621891	-25(GTCCCTATAAGA,-,0.00),-23(CCCTATAAGAGA,-,0.00)
mm_19880.1	chr2	114049476	114049676	-	1	NA	NA	NA	3299	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.025000	0.512438	
mm_15256.1	chr2	154892840	154893040	+	1	NA	NA	NA	-34	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.115000	0.611940	44(GGCTAGAAAAGA,-,0.00)
mm_131800.1	chr16	22899154	22899354	+	1	NA	NA	NA	-4868	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.010000	0.472637	
mm_33057.1	chr4	123190845	123191045	+	1	NA	NA	NA	7441	NM_174998	170638	Mm.270641	NM_174998	ENSMUSG00000046093	Hpcal4	AI846570|NVP-2	hippocalcin-like 4	protein-coding	0.025000	0.606965	
mm_33220.1	chr4	126677566	126677766	+	1	NA	NA	NA	23	NM_011970	26445	Mm.22233	NM_011970	ENSMUSG00000028837	Psmb2	AU045357|AW108089|C7-I|D4Wsu33e|HC7-I	proteasome (prosome, macropain) subunit, beta type 2	protein-coding	0.090000	0.666667	
mm_100783.1	chr11	4832953	4833153	-	1	NA	NA	NA	82	NM_001252253	18016	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	0.010000	0.427861	
mm_104520.1	chr11	96065221	96065421	-	1	NA	NA	NA	43	NM_172300	268470	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	0.135000	0.761194	
mm_164879.1	chr18	58210168	58210368	-	1	NA	NA	NA	-342	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.050000	0.601990	
mm_15353.1	chr2	156255087	156255287	+	1	NA	NA	NA	-57286	NM_027585	70873	Mm.475234	NM_027585	ENSMUSG00000038085	Cnbd2	4921517L17Rik|5430421B09Rik|Cris	cyclic nucleotide binding domain containing 2	protein-coding	0.005000	0.407960	
mm_59619.1	chr7	28152720	28152920	+	1	NA	NA	NA	-16928	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.010000	0.542289	
mm_152512.1	chr19	11278594	11278794	-	1	NA	NA	NA	5119	NM_183190	269063	Mm.268940	NM_183190	ENSMUSG00000054523	Ms4a5	-	membrane-spanning 4-domains, subfamily A, member 5	protein-coding	0.000000	0.388060	
mm_136369.1	chr16	92817833	92818033	-	1	NA	NA	NA	8141	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.000000	0.477612	
mm_27033.1	chr3	26317729	26317929	-	1	NA	NA	NA	14080	NM_138666	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.278607	
mm_93073.1	chr10	89417611	89417811	-	1	NA	NA	NA	26256	NM_001284344	237436	Mm.11982	NM_001033331	ENSMUSG00000074802	Gas2l3	8430435B07Rik|Gm240	growth arrest-specific 2 like 3	protein-coding	0.015000	0.407960	
mm_35105.1	chr4	9601962	9602162	-	1	NA	NA	NA	41655	NM_001177853	65973	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.020000	0.472637	
mm_23640.1	chr3	67092477	67092677	+	1	NA	NA	NA	106905	NM_025822	66880	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	0.000000	0.328358	
mm_171837.1	chr5	149052912	149053112	-	1	NA	NA	NA	45	NM_010439	15289	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.075000	0.631841	
mm_129425.1	chr15	78468374	78468574	-	1	NA	NA	NA	160	NM_027902	71753	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	0.005000	0.597015	
mm_39439.1	chr5	16870115	16870315	+	1	NA	NA	NA	316314	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.010000	0.378109	
mm_29954.1	chr3	133091950	133092150	-	1	NA	NA	NA	195	NM_027927	71793	Mm.246726	NM_027927	ENSMUSG00000028016	Ints12	1110020M19Rik|2810027J24Rik|4930529N21Rik|A230056J18Rik|AI666778|Phf22|int12	integrator complex subunit 12	protein-coding	0.105000	0.716418	
mm_116259.1	chr13	34130253	34130453	-	1	NA	NA	NA	1	NM_023716	73710	Mm.379227	NM_023716	ENSMUSG00000045136	Tubb2b	2410129E14Rik|brdp	tubulin, beta 2B class IIB	protein-coding	0.060000	0.636816	
mm_45910.1	chr5	89434541	89434741	-	1	NA	NA	NA	23257	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.000000	0.412935	
mm_74013.1	chr8	121541969	121542169	+	1	NA	NA	NA	-115	NM_029597	76405	Mm.165697	NM_029597	ENSMUSG00000031809	1700018B08Rik	1700084O22Rik	RIKEN cDNA 1700018B08 gene	protein-coding	0.055000	0.592040	
mm_105272.1	chr11	102406674	102406874	-	1	NA	NA	NA	743	NM_026542	68066	Mm.44226	NM_026542	ENSMUSG00000018677	Slc25a39	3010027G13Rik|D11Ertd333e	solute carrier family 25, member 39	protein-coding	0.015000	0.502488	
mm_10712.1	chr2	22779469	22779669	+	1	NA	NA	NA	5242	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.005000	0.452736	
mm_81747.1	chr9	113931063	113931263	+	1	NA	NA	NA	229	NM_013699	22221	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0.165000	0.830846	
mm_20012.1	chr2	119229799	119229999	-	1	NA	NA	NA	-34	NM_001290796	72112	Mm.46317	NM_028104	ENSMUSG00000027317	Ppp1r14d	2010107K19Rik|GBPI-1|Ppp1r14	protein phosphatase 1, regulatory (inhibitor) subunit 14D	protein-coding	0.005000	0.537313	
mm_160746.1	chr10	81183866	81184066	+	1	NA	NA	NA	48	NM_007828	13144	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.015000	0.522388	
mm_28488.1	chr3	92484043	92484243	-	1	NA	NA	NA	1738	NM_009264	20753	Mm.331191	NM_009264	ENSMUSG00000050359	Sprr1a	AI528815|SPR1a|mSPRR1A	small proline-rich protein 1A	protein-coding	0.000000	0.467662	
mm_42929.1	chr5	122850060	122850260	+	1	NA	NA	NA	-28	NM_030564	80751	Mm.388529	NM_030564	ENSMUSG00000029474	Rnf34	AW061037|AW536122|BC004042|C88279|RIFF	ring finger protein 34	protein-coding	0.110000	0.676617	
mm_122166.1	chr14	31434181	31434381	-	1	NA	NA	NA	1819	NM_011894	24056	Mm.383198	NM_011894	ENSMUSG00000021892	Sh3bp5	AI606498|SH3BP-5|Sab	SH3-domain binding protein 5 (BTK-associated)	protein-coding	0.015000	0.398010	-76(GGACTTTAAAGG,-,0.00),-75(GACTTTAAAGGC,-,0.00),-74(ACTTTAAAGGCG,+,0.00)
mm_95198.1	chr11	43433652	43433852	+	1	NA	NA	NA	21	NM_198936	193116	Mm.28200	NM_148673	ENSMUSG00000020409	Slu7	AU018913|D11Ertd730e|D3Bwg0878e	SLU7 splicing factor homolog (S. cerevisiae)	protein-coding	0.075000	0.502488	
mm_11773.1	chr2	38925394	38925594	+	1	NA	NA	NA	967	NM_010264	14536	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	0.050000	0.572139	
mm_43929.1	chr5	145083803	145084003	+	1	NA	NA	NA	34	NM_019767	56443	Mm.371610	NM_019767	ENSMUSG00000029621	Arpc1a	0610010H08Rik|1110030K07Rik|41kDa|AA407347|Sid32|Sid329	actin related protein 2/3 complex, subunit 1A	protein-coding	0.105000	0.696517	
mm_30146.1	chr3	142501757	142501957	-	1	NA	NA	NA	4923	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.000000	0.532338	-39(CACTATAAAGGG,-,0.00)
mm_10113.1	chr2	3713390	3713590	+	1	NA	NA	NA	32	NM_025626	66540	Mm.277864	NM_025626	ENSMUSG00000026655	Fam107b	3110001A13Rik|AA589595|AA959793|AI132312	family with sequence similarity 107, member B	protein-coding	0.135000	0.711443	
mm_108075.1	chr12	73945600	73945800	+	1	NA	NA	NA	-18830	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.010000	0.393035	
mm_103043.1	chr11	69795839	69796039	-	1	NA	NA	NA	-2	NM_009601	11443	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	0.075000	0.666667	
mm_70402.1	chr8	11312778	11312978	+	1	NA	NA	NA	-52	NM_009931	12826	Mm.738	NM_009931	ENSMUSG00000031502	Col4a1	Bru|Col4a-1|Raw|Svc	collagen, type IV, alpha 1	protein-coding	0.130000	0.746269	
mm_171768.1	chr5	108077276	108077476	+	1	NA	NA	NA	-789	NM_001253878	17765	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0.015000	0.447761	-30(CTATATATAGTC,+,0.00)
mm_69233.1	chr7	127708543	127708743	-	1	NA	NA	NA	123	NM_009746	12055	Mm.89667	NM_009746	ENSMUSG00000030814	Bcl7c	C230096E12Rik	B cell CLL/lymphoma 7C	protein-coding	0.145000	0.796020	
mm_24016.1	chr3	87518614	87518814	+	1	NA	NA	NA	-6864	NM_001083318	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.000000	0.502488	
mm_50105.1	chr6	41533173	41533373	+	1	NA	NA	NA	11497	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.015000	0.482587	
mm_84412.1	chr9	65562072	65562272	-	1	NA	NA	NA	17915	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.010000	0.646766	
mm_7224.1	chr1	93342527	93342727	-	1	NA	NA	NA	161	NM_080850	269224	Mm.379454	NM_080850	ENSMUSG00000026274	Pask	mKIAA0135	PAS domain containing serine/threonine kinase	protein-coding	0.095000	0.636816	
mm_158912.1	chr1	44119917	44120117	+	1	NA	NA	NA	49	NM_144558	246229	Mm.386883	NM_144558	ENSMUSG00000041684	Bivm	AI854267	basic, immunoglobulin-like variable motif containing	protein-coding	0.050000	0.651741	
mm_140440.1	chr17	88530055	88530255	+	1	NA	NA	NA	31	NM_028658	73825	Mm.271817	NM_028658	ENSMUSG00000034709	Ppp1r21	1110018J12Rik|AI426045|AW550781|Ccdc128|Klraq1	protein phosphatase 1, regulatory subunit 21	protein-coding	0.105000	0.791045	
mm_15429.1	chr2	157101545	157101745	+	1	NA	NA	NA	14590	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.030000	0.502488	
mm_139911.1	chr17	70900941	70901141	+	1	NA	NA	NA	-47509	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.015000	0.457711	
mm_64471.1	chr7	143005648	143005848	+	1	NA	NA	NA	89	NM_001128081	27027	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.000000	0.542289	
mm_136643.1	chr17	5804527	5804727	+	1	NA	NA	NA	5137	NR_045080	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.015000	0.442786	
mm_9100.1	chr1	169969081	169969281	-	1	NA	NA	NA	24	NM_010476	15490	Mm.12882	NM_010476	ENSMUSG00000026675	Hsd17b7	AI266814|ERG27	hydroxysteroid (17-beta) dehydrogenase 7	protein-coding	0.095000	0.626866	
mm_15463.1	chr2	157455902	157456102	+	1	NA	NA	NA	31709	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.005000	0.457711	
mm_55647.1	chr6	72362272	72362472	-	1	NA	NA	NA	60	NR_138581	66510	Mm.170023	NM_025607	ENSMUSG00000055850	Rnf181	1700047F16Rik|2500002L14Rik|6230415N01Rik|C77350	ring finger protein 181	protein-coding	0.070000	0.562189	
mm_169004.1	chr13	103160806	103161006	-	1	NA	NA	NA	173586	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.040000	0.417910	
mm_97327.1	chr11	76998498	76998698	+	1	NA	NA	NA	1	NM_010484	15567	Mm.300318	NM_010484	ENSMUSG00000020838	Slc6a4	5-HTT|AI323329|Htt|Sert	solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	protein-coding	0.135000	0.686567	
mm_82915.1	chr9	35054017	35054217	-	1	NA	NA	NA	-62611	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.010000	0.417910	
mm_76833.1	chr8	105255029	105255229	-	1	NA	NA	NA	24	NM_001271915	97440	Mm.489600	NM_178879	ENSMUSG00000069920	B3gnt9	3-Gn-T9|B3gnt9-ps|BGnT-9|C76565|C76566|beta-1|beta3Gn-T9	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 9	protein-coding	0.050000	0.636816	
mm_52920.1	chr6	122852846	122853046	+	1	NA	NA	NA	3211	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.005000	0.442786	
mm_121581.1	chr14	123660175	123660375	+	1	NA	NA	NA	135	NM_145467	223272	Mm.383176	NM_145467	ENSMUSG00000032925	Itgbl1	B930011D01Rik	integrin, beta-like 1	protein-coding	0.010000	0.587065	
mm_6924.1	chr1	84840504	84840704	-	1	NA	NA	NA	763	NM_025386	66153	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.015000	0.467662	
mm_118402.1	chr13	119408859	119409059	-	1	NA	NA	NA	52	NM_008710	18115	Mm.132584	NM_008710	ENSMUSG00000025453	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.095000	0.701493	
mm_126804.1	chr15	87625002	87625202	+	1	NA	NA	NA	-128	NM_134096	106014	Mm.244319	NM_134096	ENSMUSG00000054863	Fam19a5	TAFA5|Tafa-5|Tara-5	family with sequence similarity 19, member A5	protein-coding	0.165000	0.845771	
mm_101047.1	chr11	8624649	8624849	-	1	NA	NA	NA	39786	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.110000	0.721393	
mm_19585.1	chr2	101820359	101820559	-	1	NA	NA	NA	18521	NM_001110849	72446	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0.005000	0.363184	
mm_14447.1	chr2	131086298	131086498	+	1	NA	NA	NA	367	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.010000	0.557214	
mm_153271.1	chr19	37174937	37175137	-	1	NA	NA	NA	1026	NM_001290826	208922	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.040000	0.462687	
mm_85127.1	chr9	95543033	95543233	-	1	NA	NA	NA	-16684	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.010000	0.502488	
mm_104564.1	chr11	96880345	96880545	-	1	NA	NA	NA	30052	NR_029562	387170		NR_029562	ENSMUSG00000065515	Mir152	Mirn152|mir-152|mmu-mir-152	microRNA 152	ncRNA	0.025000	0.502488	
mm_153323.1	chr19	38118386	38118586	-	1	NA	NA	NA	6325	NM_011255	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.035000	0.557214	
mm_46921.1	chr5	114667480	114667680	-	1	NA	NA	NA	-9159	NM_022017	63873	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.075000	0.621891	
mm_35980.1	chr4	54028650	54028850	-	1	NA	NA	NA	202705	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.010000	0.492537	88(GGTTCTAAAAGC,-,0.00)
mm_47003.1	chr5	115429402	115429602	-	1	NA	NA	NA	-183	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.130000	0.800995	
mm_115355.1	chr13	112800764	112800964	+	1	NA	NA	NA	87	NM_008247	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.115000	0.726368	
mm_27693.1	chr3	66253588	66253788	-	1	NA	NA	NA	33801	NM_008987	19288	Mm.276776	NM_008987	ENSMUSG00000027832	Ptx3	AI607804|TSG-14	pentraxin related gene	protein-coding	0.000000	0.308458	
mm_148820.1	chr19	6299039	6299239	+	1	NA	NA	NA	-7318	NM_001033342	240505	Mm.329622	NM_001033342	ENSMUSG00000024769	Cdc42bpg	BC046418|MRCKgamma	CDC42 binding protein kinase gamma (DMPK-like)	protein-coding	0.010000	0.562189	
mm_7274.1	chr1	97128153	97128353	-	1	NA	NA	NA	50	NM_028942	74441	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	0.025000	0.492537	
mm_154893.1	chrX	20853257	20853457	+	1	NA	NA	NA	4814	NM_001159645	11836	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	0.025000	0.537313	
mm_20214.1	chr2	125723431	125723631	-	1	NA	NA	NA	617	NM_199022	271849	Mm.425101	NM_199022	ENSMUSG00000035109	Shc4	6230417E10Rik|9930029B02Rik|Gm685|RaLP	SHC (Src homology 2 domain containing) family, member 4	protein-coding	0.070000	0.721393	
mm_103182.1	chr11	70511075	70511275	-	1	NA	NA	NA	3441	NM_001013607	327956	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	0.000000	0.388060	
mm_102647.1	chr11	62915434	62915634	-	1	NA	NA	NA	-35659	NM_025496	66338	Mm.46166	NM_025496	ENSMUSG00000042200	Cdrt4	1700019I23Rik	CMT1A duplicated region transcript 4	protein-coding	0.010000	0.487562	
mm_38265.1	chr4	136880461	136880661	-	1	NA	NA	NA	5616	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.075000	0.562189	
mm_41116.1	chr5	87780054	87780254	+	1	NA	NA	NA	5704	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.000000	0.298507	
mm_100275.1	chr11	117782021	117782221	+	1	NA	NA	NA	-176	NM_001195090	217356	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0.060000	0.661692	
mm_17352.1	chr2	26608083	26608283	-	1	NA	NA	NA	-3766	NM_026212	67512	Mm.24244	NM_026212	ENSMUSG00000026922	Agpat2	2510002J07Rik|AV000834|BSCL|BSCL1|LPAAB|LPAAT-beta	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase, beta)	protein-coding	0.015000	0.552239	
mm_22985.1	chr3	33313065	33313265	+	1	NA	NA	NA	-169974	NM_001163516	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.000000	0.412935	
mm_25134.1	chr3	102469539	102469739	+	1	NA	NA	NA	-280	NM_001112698	18049	Mm.1259	NM_013609	ENSMUSG00000027859	Ngf	Ngfb	nerve growth factor	protein-coding	0.005000	0.527363	
mm_148267.1	chr18	81566115	81566315	-	1	NA	NA	NA	425865	NR_039589	100628596		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.005000	0.398010	
mm_158373.1	chrX	135210509	135210709	-	1	NA	NA	NA	78	NM_025355	66104	Mm.336239	NM_025355	ENSMUSG00000031409	Tceal6	1500026B10Rik	transcription elongation factor A (SII)-like 6	protein-coding	0.040000	0.611940	
mm_82295.1	chr9	7836772	7836972	-	1	NA	NA	NA	-66	NM_001291503	11797	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.075000	0.577114	
mm_124917.1	chr15	12117498	12117698	+	1	NA	NA	NA	-253	NM_011767	22763	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.100000	0.631841	
mm_53461.1	chr6	134858284	134858484	+	1	NA	NA	NA	28185	NM_177687	232430	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	0.005000	0.467662	
mm_68206.1	chr7	104400616	104400816	-	1	NA	NA	NA	-42070	NM_175648	244183	Mm.347647	NM_175648	ENSMUSG00000052749	Trim30b	A530023O14Rik|Trim30-1	tripartite motif-containing 30B	protein-coding	0.000000	0.452736	
mm_38347.1	chr4	137769881	137770081	-	1	NA	NA	NA	-3506	NM_001287172	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.020000	0.621891	
mm_99974.1	chr11	113933894	113934094	+	1	NA	NA	NA	131957	NM_172800	237979	Mm.130504	NM_172800	ENSMUSG00000041592	Sdk2	4632412F08Rik|5330435L01Rik|Sdk-2|mKIAA1514	sidekick cell adhesion molecule 2	protein-coding	0.020000	0.507463	
mm_102705.1	chr11	66526523	66526723	-	1	NA	NA	NA	-497	NM_001034874	380702	Mm.351764	NM_001034874	ENSMUSG00000053930	Shisa6	Gm879|ckamp52	shisa family member 6	protein-coding	0.140000	0.731343	
mm_81727.1	chr9	113122403	113122603	+	1	NA	NA	NA	464649	NR_040760	102688	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	0.005000	0.422886	
mm_97963.1	chr11	83746276	83746476	+	1	NA	NA	NA	-564	NM_183249	66107	Mm.902	NM_183249	ENSMUSG00000051748	Wfdc21	1100001G20Rik|Wdnm1-like	WAP four-disulfide core domain 21	protein-coding	0.010000	0.502488	
mm_99438.1	chr11	102432798	102432998	+	1	NA	NA	NA	2576	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.015000	0.547264	
mm_22530.1	chr3	8462329	8462529	+	1	NA	NA	NA	669	NR_033512	620966	Mm.301719	NR_033512		Gm6194	1700003N22Rik|EG620966	transmembrane protein 189 pseudogene	pseudo	0.040000	0.557214	
mm_80686.1	chr9	91371334	91371534	+	1	NA	NA	NA	2462	NM_009576	22774	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.005000	0.447761	
mm_41768.1	chr5	103501344	103501544	+	1	NA	NA	NA	76252	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.015000	0.432836	
mm_136075.1	chr16	84834761	84834961	-	1	NA	NA	NA	137	NM_001302216	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.095000	0.656716	
mm_21960.1	chr2	167190200	167190400	-	1	NA	NA	NA	-1482	NM_008420	16500	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	0.100000	0.696517	
mm_75654.1	chr8	65129432	65129632	-	1	NA	NA	NA	5	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA	0.015000	0.417910	
mm_158727.1	chrX	163885380	163885580	-	1	NA	NA	NA	-23537	NM_001290378	108012	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	0.000000	0.447761	
mm_53371.1	chr6	129408834	129409034	+	1	NA	NA	NA	72	NM_172732	232414	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0.010000	0.467662	
mm_170988.1	chr2	7409080	7409280	+	1	NA	NA	NA	-12982	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.040000	0.497512	10(CTCTTTAAAGAG,+,0.00),10(CTCTTTAAAGAG,-,0.00),12(CTTTAAAGAGGG,+,0.00)
mm_12280.1	chr2	69005214	69005414	+	1	NA	NA	NA	-130486	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.000000	0.407960	
mm_76861.1	chr8	105471292	105471492	-	1	NA	NA	NA	30	NM_026481	67971	Mm.29358	NM_026481	ENSMUSG00000014846	Tppp3	2700055K07Rik|CGI-38|Ceacam9|mmCGM8	tubulin polymerization-promoting protein family member 3	protein-coding	0.060000	0.651741	
mm_92488.1	chr10	78298073	78298273	-	1	NA	NA	NA	42034	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.025000	0.606965	
mm_19471.1	chr2	92459646	92459846	-	1	NA	NA	NA	48	NM_211358	228368	Mm.273990	NM_145832	ENSMUSG00000049922	Slc35c1	E430007K15Rik|fuct1	solute carrier family 35, member C1	protein-coding	0.110000	0.681592	-79(GGCCCTTTAAGG,-,0.00),-78(GCCCTTTAAGGC,-,0.00),-77(CCCTTTAAGGCG,+,0.00),-76(CCTTTAAGGCGG,+,0.00)
mm_86202.1	chr9	119981272	119981472	-	1	NA	NA	NA	3286	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.005000	0.552239	
mm_94936.1	chr11	29706909	29707109	+	1	NA	NA	NA	-11554	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.000000	0.417910	
mm_34994.1	chr4	156059963	156060163	+	1	NA	NA	NA	-261	NR_132444	100415901	Mm.437006	NR_132444	ENSMUSG00000086549	Gm13648	OTTMUSG00000013217	predicted gene 13648	ncRNA	0.025000	0.636816	
mm_172967.1	chr9	88858731	88858931	-	1	NA	NA	NA	-30	NR_037982	319673	Mm.149040	NR_037982	ENSMUSG00000097177	9330159M07Rik	1700096K11Rik|mU50hg-a	RIKEN cDNA 9330159M07 gene	ncRNA	0.055000	0.572139	-6(AACTATAAAGGG,-,0.00),32(TCTTTTAGGCCG,+,0.00)
mm_62989.1	chr7	120409567	120409767	+	1	NA	NA	NA	20	NM_001278943	233810		NM_001278943	ENSMUSG00000051900	Abca16	AY243472	ATP-binding cassette, sub-family A (ABC1), member 16	protein-coding	0.050000	0.631841	
mm_23080.1	chr3	36613384	36613584	+	1	NA	NA	NA	-95	NM_027810	71492	Mm.286187	NM_027810	ENSMUSG00000037325	Bbs7	8430406N16Rik	Bardet-Biedl syndrome 7 (human)	protein-coding	0.080000	0.671642	
mm_11224.1	chr2	29787397	29787597	+	1	NA	NA	NA	174	NM_001290496	227682	Mm.245739	NM_145520	ENSMUSG00000039826	Trub2	G430055L02Rik	TruB pseudouridine (psi) synthase family member 2	protein-coding	0.060000	0.532338	
mm_63829.1	chr7	135171055	135171255	+	1	NA	NA	NA	24847	NR_046050	74314	Mm.415339	NR_046050	ENSMUSG00000100717	1700120G07Rik	-	RIKEN cDNA 1700120G07 gene	ncRNA	0.005000	0.422886	
mm_103532.1	chr11	77200902	77201102	-	1	NA	NA	NA	-12034	NM_176965	319634	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	0.005000	0.492537	
mm_121067.1	chr14	95881132	95881332	+	1	NA	NA	NA	-34	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	0.005000	0.398010	
mm_19299.1	chr2	90466639	90466839	-	1	NA	NA	NA	12435	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.025000	0.537313	
mm_156034.1	chrX	107397643	107397843	+	1	NA	NA	NA	5617	NM_008409	16431	Mm.193	NM_008409	ENSMUSG00000031239	Itm2a	AW108051|Bricd2a|E25|Itm2	integral membrane protein 2A	protein-coding	0.010000	0.348259	
mm_44293.1	chr5	8422611	8422811	-	1	NA	NA	NA	5	NM_013726	27214	Mm.292470	NM_013726	ENSMUSG00000002297	Dbf4	AA545217|Ask	DBF4 zinc finger	protein-coding	0.165000	0.751244	
mm_6137.1	chr1	64737431	64737631	-	1	NA	NA	NA	219	NM_001042659	14367	Mm.150813	NM_022721	ENSMUSG00000045005	Fzd5	5330434N09Rik|AI427138|Fz-5|Fz5|mFz5	frizzled class receptor 5	protein-coding	0.130000	0.776119	
mm_62364.1	chr7	100539813	100540013	+	1	NA	NA	NA	2813	NM_183270	68185	Mm.228995	NM_183270	ENSMUSG00000044881	Coa4	5330414O08Rik|AI115477|AW047259|Chchd8|E2ig2	cytochrome c oxidase assembly factor 4	protein-coding	0.005000	0.452736	-25(CTTTTTAAAGAC,+,0.00),35(GACCTTAAATGC,-,0.00)
mm_126128.1	chr15	78335053	78335253	+	1	NA	NA	NA	9163	NM_007780	12983	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.005000	0.547264	
mm_140015.1	chr17	73332135	73332335	+	1	NA	NA	NA	67061	NM_001033444	381122	Mm.81496	NM_001033444	ENSMUSG00000043705	Capn13	CANP 13|Gm943	calpain 13	protein-coding	0.005000	0.512438	84(CCCCTTTTAAAG,-,0.00),85(CCCTTTTAAAGC,-,0.00),86(CCTTTTAAAGCC,+,0.00),87(CTTTTAAAGCCC,+,0.00)
mm_13926.1	chr2	120850598	120850798	+	1	NA	NA	NA	42	NR_038350	100502700	Mm.330516	NR_038349	ENSMUSG00000087519	AV039307	-	expressed sequence AV039307	ncRNA	0.060000	0.572139	
mm_117679.1	chr13	94154512	94154712	-	1	NA	NA	NA	96816	NM_172589	218454	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.040000	0.427861	-52(GGGTTTATAAAC,-,0.00),-50(GTTTATAAACGC,+,0.00)
mm_138507.1	chr17	35235805	35236005	+	1	NA	NA	NA	-90	NM_010909	18038	Mm.300795	NM_010909	ENSMUSG00000042419	Nfkbil1	Def-7|IKBL	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1	protein-coding	0.075000	0.557214	
mm_9666.1	chr1	177796597	177796797	-	1	NA	NA	NA	-188	NM_007422	11566	Mm.338021	NM_007422	ENSMUSG00000015961	Adss	AI314886|AS|Adss2	adenylosuccinate synthetase, non muscle	protein-coding	0.115000	0.741294	
mm_107438.1	chr12	36196546	36196746	+	1	NA	NA	NA	21556	NM_027699	71156	Mm.250837	NM_027699	ENSMUSG00000020545	Lrrc72	1700108M19Rik|4933421E18Rik	leucine rich repeat containing 72	protein-coding	0.005000	0.363184	
mm_96247.1	chr11	62575530	62575730	+	1	NA	NA	NA	1144	NM_011706	22368	Mm.288064	NM_011706	ENSMUSG00000018507	Trpv2	GRC|OTRPC2|VRL-1|Vrl1	transient receptor potential cation channel, subfamily V, member 2	protein-coding	0.025000	0.537313	
mm_154225.1	chr19	59942987	59943187	-	1	NA	NA	NA	277	NM_001033172	74998	Mm.24167	NM_001033172	ENSMUSG00000040022	Rab11fip2	4930470G04Rik|A830046J09Rik|AW558126|Nrip11	RAB11 family interacting protein 2 (class I)	protein-coding	0.040000	0.512438	
mm_29693.1	chr3	123113676	123113876	-	1	NA	NA	NA	-78789	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.045000	0.601990	
mm_45580.1	chr5	74009079	74009279	-	1	NA	NA	NA	59232	NM_177561	69727	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.000000	0.393035	
mm_130436.1	chr15	98257204	98257404	-	1	NA	NA	NA	3	NM_027304	70069	Mm.107718	NM_027304	ENSMUSG00000048077	H1fnt	1700026P10Rik|H1.7|H1t2|Hanp1|mH1t2	H1 histone family, member N, testis-specific	protein-coding	0.035000	0.646766	
mm_26464.1	chr3	144138839	144139039	+	1	NA	NA	NA	63393	NM_001161770	16911	Mm.29187	NM_010723	ENSMUSG00000028266	Lmo4	A730077C12Rik|Crp3|Etohi4	LIM domain only 4	protein-coding	0.015000	0.452736	
mm_20291.1	chr2	126932942	126933142	-	1	NA	NA	NA	193	NM_023220	66552	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	0.080000	0.701493	
mm_72845.1	chr8	88306361	88306561	+	1	NA	NA	NA	12257	NM_001037724	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.015000	0.552239	
mm_118352.1	chr13	115052648	115052848	-	1	NA	NA	NA	37410	NM_134058	105083	Mm.486295	NM_134058	ENSMUSG00000042275	Pelo	AA409897|AI852218	pelota homolog (Drosophila)	protein-coding	0.030000	0.452736	-80(TTCTTTAAAAAC,-,0.00)
mm_160389.1	chr8	54077506	54077706	+	1	NA	NA	NA	74	NM_009506	22341	Mm.1402	NM_009506	ENSMUSG00000031520	Vegfc	AW228853|VEGF-C	vascular endothelial growth factor C	protein-coding	0.105000	0.716418	
mm_161570.1	chr16	20734430	20734630	-	1	NA	NA	NA	-19	NM_009379	21832	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.065000	0.572139	
mm_70249.1	chr8	3470750	3470950	+	1	NA	NA	NA	-12	NM_029598	76406	Mm.74996	NM_029598	ENSMUSG00000040340	1700019B03Rik	-	RIKEN cDNA 1700019B03 gene	protein-coding	0.000000	0.497512	
mm_81361.1	chr9	108692055	108692255	+	1	NA	NA	NA	12	NM_008924	19087	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0.185000	0.820896	
mm_55785.1	chr6	82652423	82652623	-	1	NA	NA	NA	342	NM_025882	66979	Mm.195753	NM_025882	ENSMUSG00000030042	Pole4	2400007P05Rik|5830430F06Rik	polymerase (DNA-directed), epsilon 4 (p12 subunit)	protein-coding	0.070000	0.641791	
mm_121860.1	chr14	20674612	20674812	-	1	NA	NA	NA	391	NM_001168273	218811	Mm.173119	NM_172596	ENSMUSG00000039367	Sec24c	2610204K03Rik|mKIAA0079	Sec24 related gene family, member C (S. cerevisiae)	protein-coding	0.050000	0.567164	
mm_61764.1	chr7	82771886	82772086	+	1	NA	NA	NA	-16342	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.055000	0.567164	
mm_164565.1	chr17	17871601	17871801	-	1	NA	NA	NA	12238	NM_013521	14293	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0.010000	0.417910	
mm_49166.1	chr6	14608239	14608439	+	1	NA	NA	NA	146935	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	0.000000	0.402985	
mm_91447.1	chr10	33937534	33937734	-	1	NA	NA	NA	13578	NM_028287	72580	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	0.010000	0.442786	-82(CACCAGAAAAGG,-,0.00)
mm_123536.1	chr14	66807825	66808025	-	1	NA	NA	NA	60675	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.035000	0.542289	
mm_99415.1	chr11	102285106	102285306	+	1	NA	NA	NA	267	NM_001302505	72053	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	0.055000	0.611940	
mm_83425.1	chr9	44980236	44980436	-	1	NA	NA	NA	95	NM_009850	12502	Mm.335106	NM_009850	ENSMUSG00000002033	Cd3g	Ctg-3|Ctg3|T3g	CD3 antigen, gamma polypeptide	protein-coding	0.000000	0.552239	
mm_45074.1	chr5	43868655	43868855	-	1	NA	NA	NA	-54	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.005000	0.532338	
mm_42009.1	chr5	108065617	108065817	+	1	NA	NA	NA	43	NM_013827	17765	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0.095000	0.651741	
mm_26415.1	chr3	142610610	142610810	+	1	NA	NA	NA	-9953	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.010000	0.333333	
mm_48736.1	chr5	147592374	147592574	-	1	NA	NA	NA	133514	NM_010228	14254	Mm.389712	NM_010228	ENSMUSG00000029648	Flt1	AI323757|Flt-1|VEGFR-1|VEGFR1|sFlt1	FMS-like tyrosine kinase 1	protein-coding	0.050000	0.502488	
mm_1489.1	chr1	71714069	71714269	+	1	NA	NA	NA	60834	NR_040308	100042814	Mm.405775	NR_040308	ENSMUSG00000073652	Apol7d	ENSMUSG00000073652|Gm15456|OTTMUSG00000022136	apolipoprotein L 7d	ncRNA	0.025000	0.482587	
mm_150813.1	chr19	44396640	44396840	+	1	NA	NA	NA	10969	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.015000	0.527363	
mm_83452.1	chr9	45203936	45204136	-	1	NA	NA	NA	39	NM_145403	214523	Mm.436756	NM_145403	ENSMUSG00000032091	Tmprss4	mCAP2	transmembrane protease, serine 4	protein-coding	0.015000	0.507463	
mm_93866.1	chr10	123147198	123147398	-	1	NA	NA	NA	49721	NM_027604	14479	Mm.244209	NM_027604	ENSMUSG00000020124	Usp15	4921514G19Rik|AI327321|E430033I05Rik|Gcap18	ubiquitin specific peptidase 15	protein-coding	0.015000	0.492537	
mm_28968.1	chr3	101003720	101003920	-	1	NA	NA	NA	25675	NM_001167906	630146	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0.035000	0.582090	
mm_152975.1	chr19	29453902	29454102	-	1	NA	NA	NA	43083	NM_021396	58205	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.000000	0.398010	
mm_134283.1	chr16	14205037	14205237	-	1	NA	NA	NA	41862	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.020000	0.567164	
mm_164842.1	chr18	42952380	42952580	+	1	NA	NA	NA	-52974	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.000000	0.402985	
mm_32399.1	chr4	106866958	106867158	+	1	NA	NA	NA	-44412	NM_198438	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.030000	0.661692	
mm_32771.1	chr4	116694020	116694220	+	1	NA	NA	NA	-8098	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.005000	0.353234	
mm_11948.1	chr2	52927549	52927749	+	1	NA	NA	NA	69781	NM_172409	71409	Mm.394427	NM_172409	ENSMUSG00000036053	Fmnl2	5430425K04Rik|Man	formin-like 2	protein-coding	0.015000	0.393035	
mm_31582.1	chr4	57782070	57782270	+	1	NA	NA	NA	-63078	NM_009649	11641	Mm.467752	NM_009649	ENSMUSG00000038729	Akap2	AA959716|AI649048|Akap-2|Akap-kl|B230340M18Rik|Prka2	A kinase (PRKA) anchor protein 2	protein-coding	0.070000	0.716418	
mm_35699.1	chr4	44167309	44167509	-	1	NA	NA	NA	129	NM_175201	73469	Mm.262859	NM_175201	ENSMUSG00000035696	Rnf38	1700065B19Rik|2610202O07Rik|AA673263|Oip1	ring finger protein 38	protein-coding	0.070000	0.601990	
mm_157050.1	chrX	8018398	8018598	-	1	NA	NA	NA	-6	NM_027227	69824	Mm.279756	NM_027227	ENSMUSG00000031163	Glod5	2010001H14Rik|AV061890	glyoxalase domain containing 5	protein-coding	0.010000	0.547264	
mm_16151.1	chr2	172345511	172345711	+	1	NA	NA	NA	34	NM_025912	67017	Mm.30013	NM_025912	ENSMUSG00000027495	Fam210b	2010011I20Rik|AI430961|AV108736	family with sequence similarity 210, member B	protein-coding	0.105000	0.736318	
mm_57491.1	chr6	125285969	125286169	-	1	NA	NA	NA	-27	NM_009446	22144	Mm.287784	NM_009446	ENSMUSG00000067702	Tuba3a	AI528779|M[a]3|Tuba3	tubulin, alpha 3A	protein-coding	0.065000	0.631841	
mm_22900.1	chr3	30809739	30809939	+	1	NA	NA	NA	16963	NM_027016	69276	Mm.26017	NM_027016	ENSMUSG00000027706	Sec62	3100002M17Rik|AI844545|AW545092|Dtrp1|HTP1|Tloc1	SEC62 homolog (S. cerevisiae)	protein-coding	0.015000	0.313433	-72(TGCTTTTTAAAG,-,0.00),-70(CTTTTTAAAGAA,+,0.00),-18(GGCTTTTAAAGA,-,0.00),-17(GCTTTTAAAGAA,+,0.00),10(GGCCCTAAAAGT,-,0.00)
mm_129777.1	chr15	82792530	82792730	-	1	NA	NA	NA	1615	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.030000	0.497512	
mm_122849.1	chr14	54759578	54759778	-	1	NA	NA	NA	22208	NM_016972	50934	Mm.276831	NM_016972	ENSMUSG00000022180	Slc7a8	AA408822|LAT2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	protein-coding	0.035000	0.547264	
mm_51575.1	chr6	83758698	83758898	+	1	NA	NA	NA	3710	NR_105027	67934	Mm.126190	NR_105027	ENSMUSG00000099354	1700124L16Rik	-	RIKEN cDNA 1700124L16 gene	ncRNA	0.010000	0.343284	
mm_127247.1	chr15	99670124	99670324	+	1	NA	NA	NA	-494	NM_009597	11419	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	0.040000	0.562189	
mm_47287.1	chr5	122131879	122132079	-	1	NA	NA	NA	2914	NM_001289811	330188	Mm.386907	NM_183307	ENSMUSG00000043036	Ccdc63	4921511C16Rik	coiled-coil domain containing 63	protein-coding	0.105000	0.671642	
mm_15850.1	chr2	164777398	164777598	+	1	NA	NA	NA	2236	NM_009394	21925	Mm.1716	NM_009394	ENSMUSG00000017300	Tnnc2	Tncs	troponin C2, fast	protein-coding	0.025000	0.502488	
mm_80170.1	chr9	71591392	71591592	+	1	NA	NA	NA	868	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	0.020000	0.462687	
mm_93339.1	chr10	99759497	99759697	-	1	NA	NA	NA	61	NM_027945	71832	Mm.483162	NM_027945	ENSMUSG00000046934	Csl	1700007H16Rik	citrate synthase like	protein-coding	0.050000	0.472637	
mm_16552.1	chr2	181767202	181767402	+	1	NA	NA	NA	273	NM_001171616	17932	Mm.458718	NM_008665	ENSMUSG00000010505	Myt1	Nzf2|Nzf2a|Nzf2b|Nztf2	myelin transcription factor 1	protein-coding	0.020000	0.527363	
mm_27886.1	chr3	79181238	79181438	-	1	NA	NA	NA	-31581	NR_045502	70924	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0.035000	0.562189	
mm_107984.1	chr12	73044433	73044633	+	1	NA	NA	NA	2179	NM_009189	20471	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0.050000	0.597015	
mm_110515.1	chr12	54795621	54795821	-	1	NA	NA	NA	-59	NM_026998	72183	Mm.28240	NM_026998	ENSMUSG00000005656	Snx6	2010006G21Rik|2610032J07Rik|2810425K19Rik|AU018928|C85963	sorting nexin 6	protein-coding	0.105000	0.711443	
mm_170930.1	chr2	40555610	40555810	+	1	NA	NA	NA	-1329372	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding	0.045000	0.417910	
mm_137071.1	chr17	20955868	20956068	+	1	NA	NA	NA	10514	NM_016891	51792	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	0.040000	0.557214	
mm_145361.1	chr18	56676612	56676812	+	1	NA	NA	NA	-31101	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.015000	0.492537	
mm_95471.1	chr11	50793522	50793722	+	1	NA	NA	NA	34109	NM_013922	30944	Mm.103674	NM_013922	ENSMUSG00000044807	Zfp354c	5330421P20Rik|AJ18|AW743325|Kid3|Tcf17l2|Znf354c|mKIAA4218	zinc finger protein 354C	protein-coding	0.005000	0.487562	
mm_59311.1	chr7	25282542	25282742	+	1	NA	NA	NA	463	NM_027882	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.160000	0.850746	
mm_60978.1	chr7	48959009	48959209	+	1	NA	NA	NA	36	NM_001111016	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.065000	0.666667	
mm_125938.1	chr15	76247843	76248043	+	1	NA	NA	NA	-248	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.005000	0.592040	
mm_117959.1	chr13	99447504	99447704	-	1	NA	NA	NA	-34778	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.020000	0.616915	
mm_3897.1	chr1	161701277	161701477	+	1	NA	NA	NA	87118	NM_001205243	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.015000	0.402985	
mm_102083.1	chr11	52280144	52280344	-	1	NA	NA	NA	2351	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.020000	0.457711	
mm_74917.1	chr8	25547967	25548167	-	1	NA	NA	NA	8016	NR_110510	102633315	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	OTTMUSG00000031030	predicted gene 16159	ncRNA	0.000000	0.437811	74(GTCTTTAAAGTC,+,0.00)
mm_34717.1	chr4	152127064	152127264	+	1	NA	NA	NA	1761	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.015000	0.592040	
mm_113263.1	chr13	28911926	28912126	+	1	NA	NA	NA	-26604	NR_045053	72518	Mm.37454	NR_045053		2610307P16Rik	AI666457	RIKEN cDNA 2610307P16 gene	ncRNA	0.005000	0.427861	
mm_113706.1	chr13	43365537	43365737	+	1	NA	NA	NA	-5079	NM_178848	68346	Mm.35325	NM_178848	ENSMUSG00000054021	Sirt5	0610012J09Rik|1500032M05Rik|AV001953	sirtuin 5	protein-coding	0.085000	0.676617	
mm_147021.1	chr18	34624694	34624894	-	1	NA	NA	NA	69	NM_030147	78656	Mm.45602	NM_030147	ENSMUSG00000003778	Brd8	2610007E11Rik|4432404P07Rik|SMAP	bromodomain containing 8	protein-coding	0.030000	0.447761	
mm_49394.1	chr6	28421688	28421888	+	1	NA	NA	NA	-64	NM_028900	74375	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	0.055000	0.606965	
mm_105608.1	chr11	106782777	106782977	-	1	NA	NA	NA	-118	NR_037224	100526469		NR_037224	ENSMUSG00000093273	Mir3064	mir-3064|mmu-mir-3064	microRNA 3064	ncRNA	0.005000	0.388060	
mm_146589.1	chr18	9315275	9315475	-	1	NA	NA	NA	-32566	NM_153086	225152	Mm.119273	NM_153086	ENSMUSG00000036855	Gjd4	9430022F06Rik|Cx39	gap junction protein, delta 4	protein-coding	0.000000	0.283582	
mm_14085.1	chr2	125136511	125136711	+	1	NA	NA	NA	-81	NM_001162934	381418	Mm.295608	NM_001162934	ENSMUSG00000074872	Ctxn2	BB181834|Gm1638	cortexin 2	protein-coding	0.055000	0.542289	
mm_127317.1	chr15	100275895	100276095	+	1	NA	NA	NA	-4842	NM_183109	75002	Mm.261400	NM_183109	ENSMUSG00000045631	Tmprss12	4930478A21Rik	transmembrane (C-terminal) protease, serine 12	protein-coding	0.000000	0.398010	
mm_97593.1	chr11	78948120	78948320	+	1	NA	NA	NA	22929	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.562189	
mm_72153.1	chr8	72152503	72152703	+	1	NA	NA	NA	-8597	NM_023126	17274	Mm.162811	NM_023126	ENSMUSG00000003037	Rab8a	AA409338|Mel	RAB8A, member RAS oncogene family	protein-coding	0.010000	0.422886	
mm_22770.1	chr3	20249473	20249673	+	1	NA	NA	NA	-7392	NM_007753	12873	Mm.1135	NM_007753	ENSMUSG00000001865	Cpa3	MC-CPA	carboxypeptidase A3, mast cell	protein-coding	0.005000	0.333333	
mm_133081.1	chr16	59538631	59538831	+	1	NA	NA	NA	17021	NM_174848	224273	Mm.246424	NM_174848	ENSMUSG00000022723	Crybg3	5031404N19|AU022790|Gm9581	beta-gamma crystallin domain containing 3	protein-coding	0.020000	0.338308	
mm_118997.1	chr14	28510009	28510209	+	1	NA	NA	NA	-1296	NM_001256224	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.030000	0.567164	
mm_76145.1	chr8	82207278	82207478	-	1	NA	NA	NA	195208	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.000000	0.487562	
mm_152509.1	chr19	11266042	11266242	-	1	NA	NA	NA	9	NM_007641	12482	Mm.4046	NM_007641	ENSMUSG00000024673	Ms4a1	AA960661|Cd20|Ly-44|Ms4a2	membrane-spanning 4-domains, subfamily A, member 1	protein-coding	0.015000	0.502488	
mm_117152.1	chr13	61255248	61255448	-	1	NA	NA	NA	0	NM_019541	56094	Mm.342861	NM_019541	ENSMUSG00000057446	Cts8	CTS2|Epcs68|Epcs70	cathepsin 8	protein-coding	0.005000	0.447761	
mm_113660.1	chr13	42681476	42681676	+	1	NA	NA	NA	777	NM_001302635	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.025000	0.422886	
mm_27940.1	chr3	79628542	79628742	-	1	NA	NA	NA	125	NM_025794	66841	Mm.28336	NM_025794	ENSMUSG00000027809	Etfdh	0610010I20Rik|AV001013	electron transferring flavoprotein, dehydrogenase	protein-coding	0.070000	0.626866	
mm_76352.1	chr8	84771799	84771999	-	1	NA	NA	NA	2470	NM_001081981	18032	Mm.9394	NM_010906	ENSMUSG00000001911	Nfix	CTF|NF-I/X|NF1-X|NFI-X	nuclear factor I/X	protein-coding	0.035000	0.547264	-38(TTGTTTAAAGGG,-,0.00)
mm_77573.1	chr8	123432516	123432716	-	1	NA	NA	NA	-10340	NM_001253784	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.055000	0.572139	
mm_67137.1	chr7	72649254	72649454	-	1	NA	NA	NA	-342759	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.010000	0.422886	
mm_124541.1	chr14	122464133	122464333	-	1	NA	NA	NA	1425	NM_022987	65100	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	0.130000	0.756219	
mm_141570.1	chr17	32284627	32284827	-	1	NA	NA	NA	-594	NM_020508	57261	Mm.253518	NM_020508	ENSMUSG00000024002	Brd4	Brd5|HUNK1|MCAP|WI-11513	bromodomain containing 4	protein-coding	0.150000	0.736318	
mm_45184.1	chr5	51910742	51910942	-	1	NA	NA	NA	225175	NR_105845	102466648		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0.005000	0.383085	
mm_62843.1	chr7	114276217	114276417	+	1	NA	NA	NA	-201	NM_011965	26440	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.060000	0.557214	
mm_4231.1	chr1	171370002	171370202	+	1	NA	NA	NA	-71	NM_027893	71740	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	0.015000	0.542289	15(TTCTCTTTAAGG,-,0.00)
mm_5824.1	chr1	52794828	52795028	-	1	NA	NA	NA	22760	NM_008384	16329	Mm.917	NM_008384	ENSMUSG00000026102	Inpp1	2300002C06Rik|AV137389	inositol polyphosphate-1-phosphatase	protein-coding	0.010000	0.477612	-33(CCCCTTAAATAG,-,0.00),-31(CCTTAAATAGAA,+,0.00)
mm_11250.1	chr2	29890604	29890804	+	1	NA	NA	NA	641	NM_013615	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.060000	0.656716	
mm_65683.1	chr7	28350371	28350571	-	1	NA	NA	NA	-218	NM_013647	20055	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	0.050000	0.582090	
mm_146722.1	chr18	15064223	15064423	-	1	NA	NA	NA	-741	NM_001142731	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.065000	0.621891	
mm_52110.1	chr6	97893844	97894044	+	1	NA	NA	NA	-35873	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.507463	
mm_7444.1	chr1	120120067	120120267	-	1	NA	NA	NA	752	NM_001037999	13167	Mm.2785	NM_007830	ENSMUSG00000026385	Dbi	ACBD1|Acbp|EP|endozepine	diazepam binding inhibitor	protein-coding	0.005000	0.537313	
mm_16200.1	chr2	173021831	173022031	+	1	NA	NA	NA	29	NM_019547	56190	Mm.485782	NM_019547	ENSMUSG00000027510	Rbm38	Rnpc1|Seb4|Seb4l	RNA binding motif protein 38	protein-coding	0.160000	0.736318	
mm_154274.1	chr19	60782116	60782316	-	1	NA	NA	NA	-7819	NR_037245	100526521		NR_037245	ENSMUSG00000104890	Mir3084-1	Mir3084|mmu-mir-3084|mmu-mir-3084-1	microRNA 3084-1	ncRNA	0.005000	0.363184	
mm_142291.1	chr17	40319202	40319402	-	1	NA	NA	NA	-95	NM_009638	11571	Mm.16781	NM_009638	ENSMUSG00000025431	Crisp1	AW324342|Aeg1|CRISP-1	cysteine-rich secretory protein 1	protein-coding	0.005000	0.398010	61(GAGTATAAATAG,-,0.00)
mm_112150.1	chr12	113259954	113260154	-	1	NA	NA	NA	74151	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.045000	0.552239	
mm_137805.1	chr17	29947955	29948155	+	1	NA	NA	NA	-57032	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.005000	0.562189	
mm_54419.1	chr6	32896971	32897171	-	1	NA	NA	NA	163081	NM_025336	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0.005000	0.432836	
mm_117359.1	chr13	70573054	70573254	-	1	NA	NA	NA	-87	NR_045934	73584	Mm.442491	NR_045934	ENSMUSG00000101051	1700100L14Rik	-	RIKEN cDNA 1700100L14 gene	ncRNA	0.000000	0.447761	
mm_125640.1	chr15	62152874	62153074	+	1	NA	NA	NA	66477	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.000000	0.452736	
mm_39970.1	chr5	32156608	32156808	+	1	NA	NA	NA	20236	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.020000	0.437811	
mm_107307.1	chr12	31073865	31074065	+	1	NA	NA	NA	-3	NM_027828	104943	Mm.248938	NM_027828	ENSMUSG00000036136	Fam110c	9030611O19Rik|AU019489	family with sequence similarity 110, member C	protein-coding	0.075000	0.636816	
mm_172443.1	chr7	29965539	29965739	-	1	NA	NA	NA	-13746	NM_178384	72723	Mm.371648	NM_178384	ENSMUSG00000059975	Zfp74	2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77	zinc finger protein 74	protein-coding	0.045000	0.502488	
mm_10226.1	chr2	6322534	6322734	+	1	NA	NA	NA	-123	NM_001080548	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.185000	0.815920	
mm_152194.1	chr19	7483043	7483243	-	1	NA	NA	NA	148	NM_001271486	20168	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0.080000	0.626866	
mm_63739.1	chr7	130900452	130900652	+	1	NA	NA	NA	-7716	NR_106028	102466219		NR_106028	ENSMUSG00000104914	Mir7061	mmu-mir-7061	microRNA 7061	ncRNA	0.010000	0.353234	
mm_136029.1	chr16	76373779	76373979	-	1	NA	NA	NA	-830	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.020000	0.537313	
mm_127765.1	chr15	103562867	103563067	+	1	NA	NA	NA	2114	NM_001289587	14663	Mm.219621	NM_008134	ENSMUSG00000022491	Glycam1	MC26|Sgp50|glyCAM-1	glycosylation dependent cell adhesion molecule 1	protein-coding	0.010000	0.427861	
mm_10846.1	chr2	24975978	24976178	+	1	NA	NA	NA	45	NM_146251	241274	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0.030000	0.542289	
mm_155359.1	chrX	70385807	70386007	+	1	NA	NA	NA	-6	NM_026787	68618	Mm.293255	NM_026787	ENSMUSG00000045237	1110012L19Rik	-	RIKEN cDNA 1110012L19 gene	protein-coding	0.050000	0.462687	
mm_130728.1	chr15	101224532	101224732	-	1	NA	NA	NA	145	NR_045327	380977	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.070000	0.641791	
mm_2832.1	chr1	131275506	131275706	+	1	NA	NA	NA	3957	NM_019777	56489	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.015000	0.606965	
mm_94170.1	chr10	128804327	128804527	-	1	NA	NA	NA	-57	NM_178066	73827	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	0.025000	0.621891	
mm_122102.1	chr14	30915669	30915869	-	1	NA	NA	NA	7818	NM_008407	16426	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	0.020000	0.537313	
mm_47154.1	chr5	120629883	120630083	-	1	NA	NA	NA	4252	NM_001195094	546886	Mm.464847	NM_001195094	ENSMUSG00000094282	Cfap73	Ccdc42b|Gm5988	cilia and flagella associated protein 73	protein-coding	0.055000	0.621891	
mm_163754.1	chr13	119790633	119790833	-	1	NA	NA	NA	-1	NM_001302548	72465	Mm.139115	NM_028245	ENSMUSG00000094870	Zfp131	2610109I01Rik|AW558871|Znf131	zinc finger protein 131	protein-coding	0.135000	0.796020	
mm_35290.1	chr4	21772313	21772513	-	1	NA	NA	NA	-3857	NM_001290425	77593	Mm.154306	NM_152825	ENSMUSG00000040455	Usp45	3110003C05Rik|4930550B20Rik|AI843191|Gcap7	ubiquitin specific petidase 45	protein-coding	0.000000	0.467662	
mm_32096.1	chr4	98546625	98546825	+	1	NA	NA	NA	91	NM_001005787	12695	Mm.90218	NM_007704	ENSMUSG00000061859	Patj	Cipp|Inadl	PATJ, crumbs cell polarity complex component	protein-coding	0.015000	0.542289	
mm_109011.1	chr12	103346681	103346881	+	1	NA	NA	NA	9220	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.010000	0.492537	
mm_94593.1	chr11	11771351	11771551	+	1	NA	NA	NA	37511	NM_021891	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.010000	0.383085	
mm_91800.1	chr10	53629905	53630105	-	1	NA	NA	NA	434	NM_027830	71567	Mm.278221	NM_027830	ENSMUSG00000058298	Mcm9	9030408O17Rik|Gm235|Mcmdc1	minichromosome maintenance 9 homologous recombination repair factor	protein-coding	0.130000	0.741294	
mm_29431.1	chr3	109027561	109027761	-	1	NA	NA	NA	-54	NM_001163567	329739	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.175000	0.805970	
mm_104947.1	chr11	100121608	100121808	-	1	NA	NA	NA	-142	NM_010662	16663	Mm.4646	NM_010662	ENSMUSG00000044041	Krt13	CK13|K13|Krt-1.13|Krt1-13	keratin 13	protein-coding	0.000000	0.487562	
mm_91450.1	chr10	33949396	33949596	-	1	NA	NA	NA	1716	NM_028287	72580	Mm.248081	NM_028287	ENSMUSG00000039531	Zufsp	2700019D07Rik	zinc finger with UFM1-specific peptidase domain	protein-coding	0.000000	0.338308	
mm_87186.1	chr10	39369677	39369877	+	1	NA	NA	NA	-22	NM_001122892	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.115000	0.706468	
mm_68852.1	chr7	126369349	126369549	-	1	NA	NA	NA	119	NM_010689	16797	Mm.10280	NM_010689	ENSMUSG00000030742	Lat	p36-38|pp36	linker for activation of T cells	protein-coding	0.040000	0.651741	
mm_46800.1	chr5	113069560	113069760	-	1	NA	NA	NA	457	NM_007773	12961	Mm.1215	NM_007773	ENSMUSG00000042240	Crybb2	Cryb-2	crystallin, beta B2	protein-coding	0.035000	0.582090	
mm_117799.1	chr13	97206954	97207154	-	1	NA	NA	NA	-8697	NM_010422	15212	Mm.27816	NM_010422	ENSMUSG00000021665	Hexb	-	hexosaminidase B	protein-coding	0.005000	0.467662	
mm_113488.1	chr13	37378440	37378640	+	1	NA	NA	NA	33195	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.010000	0.437811	
mm_145840.1	chr18	65446533	65446733	+	1	NA	NA	NA	15636	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.298507	
mm_83094.1	chr9	40321097	40321297	-	1	NA	NA	NA	-12275	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.015000	0.567164	
mm_122323.1	chr14	36968609	36968809	-	1	NA	NA	NA	55	NM_027045	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.115000	0.746269	
mm_83121.1	chr9	40407926	40408126	-	1	NA	NA	NA	47738	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.020000	0.547264	2(GTCTTTATAAGA,-,0.00)
mm_163542.1	chr13	15771475	15771675	+	1	NA	NA	NA	31055	NR_045507	71071	Mm.380845	NR_045507		4933412O06Rik	-	RIKEN cDNA 4933412O06 gene	ncRNA	0.005000	0.412935	
mm_7687.1	chr1	128592196	128592396	-	1	NA	NA	NA	3	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.085000	0.611940	
mm_55322.1	chr6	55678432	55678632	-	1	NA	NA	NA	2731	NM_009717	11922	Mm.5106	NM_009717	ENSMUSG00000037984	Neurod6	Atoh2|Math-2|Math2|Nex|Nex1m|bHLHa2	neurogenic differentiation 6	protein-coding	0.010000	0.388060	
mm_68151.1	chr7	102250033	102250233	-	1	NA	NA	NA	-15	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.105000	0.805970	
mm_55594.1	chr6	71608997	71609197	-	1	NA	NA	NA	23589	NM_173001	104263	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0.000000	0.537313	
mm_64469.1	chr7	143005590	143005790	+	1	NA	NA	NA	31	NM_001128081	27027	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.000000	0.527363	
mm_158762.1	chrX	166498914	166499114	-	1	NA	NA	NA	11464	NM_001007577	245695	Mm.336318	NM_001007577	ENSMUSG00000051224	Tceanc	A630018P17Rik|Gm390	transcription elongation factor A (SII) N-terminal and central domain containing	protein-coding	0.000000	0.517413	-30(CTCTATATAGTC,+,0.00)
mm_162620.1	chr1	183418359	183418559	+	1	NA	NA	NA	-11	NM_030175	78772	Mm.29003	NM_030175	ENSMUSG00000053461	Hhipl2	4930507C10Rik|AW208802|Hhip3	hedgehog interacting protein-like 2	protein-coding	0.015000	0.587065	
mm_77243.1	chr8	115705231	115705431	-	1	NA	NA	NA	1563	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.010000	0.412935	
mm_37430.1	chr4	122927360	122927560	-	1	NA	NA	NA	33728	NM_029662	76574	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.005000	0.472637	86(TCTTTTATAGGT,+,0.00)
mm_21961.1	chr2	167221259	167221459	-	1	NA	NA	NA	19178	NM_008968	19223	Mm.2339	NM_008968	ENSMUSG00000017969	Ptgis	Cyp8|Cyp8a1|Pgis	prostaglandin I2 (prostacyclin) synthase	protein-coding	0.040000	0.562189	11(GACCCTATATGG,-,0.00),13(CCCTATATGGAG,+,0.00)
mm_97247.1	chr11	75747366	75747566	+	1	NA	NA	NA	14579	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.000000	0.402985	
mm_140019.1	chr17	73804822	73805022	+	1	NA	NA	NA	81	NM_020578	57440	Mm.18526	NM_020578	ENSMUSG00000024065	Ehd3	Ehd2	EH-domain containing 3	protein-coding	0.095000	0.651741	-61(GCATTTAAACGC,+,0.00)
mm_113061.1	chr13	23739094	23739294	+	1	NA	NA	NA	387	NM_015786	50708	Mm.193539	NM_015786	ENSMUSG00000036181	Hist1h1c	0610008C09Rik|H1.2|H1c|H1f2|H1var1|His1a	histone cluster 1, H1c	protein-coding	0.055000	0.621891	
mm_107520.1	chr12	40454936	40455136	+	1	NA	NA	NA	8983	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.005000	0.358209	
mm_138023.1	chr17	33911414	33911614	+	1	NA	NA	NA	1913	NM_001199733	13163	Mm.271809	NM_007829	ENSMUSG00000002307	Daxx	-	Fas death domain-associated protein	protein-coding	0.040000	0.577114	
mm_47650.1	chr5	125390099	125390299	-	1	NA	NA	NA	-182	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.030000	0.611940	
mm_142576.1	chr17	46680710	46680910	-	1	NA	NA	NA	27	NM_001277311	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.110000	0.666667	
mm_154680.1	chrX	7919914	7920114	+	1	NA	NA	NA	192	NM_013892	30052	Mm.4881	NM_013892	ENSMUSG00000039278	Pcsk1n	AI848336|KEP|PEN|PEN19|PEN20|Pan3|SAAS|SAASCT|bLEN|lLEN|proSAAS	proprotein convertase subtilisin/kexin type 1 inhibitor	protein-coding	0.070000	0.686567	
mm_108863.1	chr12	98920527	98920727	+	1	NA	NA	NA	15	NM_198311	76260	Mm.282660	NM_029553	ENSMUSG00000021013	Ttc8	0610012F22Rik|AV001447|BBS8	tetratricopeptide repeat domain 8	protein-coding	0.070000	0.666667	
mm_128107.1	chr15	28022089	28022289	-	1	NA	NA	NA	3659	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.005000	0.432836	
mm_141242.1	chr17	27467687	27467887	-	1	NA	NA	NA	35746	NM_001013385	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.005000	0.477612	
mm_25839.1	chr3	129214187	129214387	+	1	NA	NA	NA	355	NM_001287048	18741	Mm.246804	NM_011098	ENSMUSG00000028023	Pitx2	9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg	paired-like homeodomain transcription factor 2	protein-coding	0.075000	0.621891	22(CCCTAAAGAGGC,+,0.00)
mm_95157.1	chr11	35838521	35838721	+	1	NA	NA	NA	-4093	NM_025936	104458	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.055000	0.537313	
mm_16660.1	chr2	6650851	6651051	-	1	NA	NA	NA	70711	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.005000	0.353234	
mm_62826.1	chr7	113513782	113513982	+	1	NA	NA	NA	48	NM_027379	67420	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.140000	0.711443	
mm_171571.1	chr4	147361205	147361405	+	1	NA	NA	NA	185439	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.030000	0.522388	
mm_81314.1	chr9	108397831	108398031	+	1	NA	NA	NA	5097	NM_053216	112418	Mm.78287	NM_053216	ENSMUSG00000032611	1700102P08Rik	AI593206	RIKEN cDNA 1700102P08 gene	protein-coding	0.000000	0.532338	
mm_80172.1	chr9	72060797	72060997	+	1	NA	NA	NA	50304	NM_001253862	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.020000	0.402985	
mm_172561.1	chr8	107038121	107038321	-	1	NA	NA	NA	6895	NM_126165	116733	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0.060000	0.582090	
mm_125305.1	chr15	37264298	37264498	+	1	NA	NA	NA	31362	NM_026496	252973	Mm.244612	NM_026496	ENSMUSG00000022286	Grhl2	0610015A08Rik|BOM|Tcfcp2l3|clft3	grainyhead-like 2 (Drosophila)	protein-coding	0.015000	0.537313	
mm_26902.1	chr3	19311153	19311353	-	1	NA	NA	NA	69	NM_001122759	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.165000	0.805970	
mm_139530.1	chr17	56673225	56673425	+	1	NA	NA	NA	100	NM_027933	71810	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	0.100000	0.686567	
mm_150690.1	chr19	42147281	42147481	+	1	NA	NA	NA	-8	NM_183195	277010	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0.055000	0.641791	
mm_91249.1	chr10	22731741	22731941	-	1	NA	NA	NA	-394	NM_011603	237336	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.125000	0.721393	
mm_138218.1	chr17	34312014	34312214	+	1	NA	NA	NA	6247	NM_010382	14969	Mm.22564	NM_010382	ENSMUSG00000060586	H2-Eb1	Eb|H-2Eb|H2Eb|Ia-4|Ia4	histocompatibility 2, class II antigen E beta	protein-coding	0.010000	0.477612	-33(GGACATAAAAGG,-,0.00)
mm_122271.1	chr14	34362269	34362469	-	1	NA	NA	NA	-6976	NM_183278	69134	Mm.27156	NM_183278	ENSMUSG00000043681	Fam25c	2200001I15Rik|Fam25	family with sequence similarity 25, member C	protein-coding	0.015000	0.482587	
mm_62626.1	chr7	107594018	107594218	+	1	NA	NA	NA	-933	NM_008905	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.020000	0.517413	
mm_29476.1	chr3	115711092	115711292	-	1	NA	NA	NA	3863	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.000000	0.407960	
mm_39372.1	chr5	12383067	12383267	+	1	NA	NA	NA	1	NM_028882	108151	Mm.89313	NM_028882	ENSMUSG00000040254	Sema3d	4631426B19Rik	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D	protein-coding	0.045000	0.577114	
mm_135413.1	chr16	45031087	45031287	-	1	NA	NA	NA	-62866	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.000000	0.432836	
mm_51031.1	chr6	65525229	65525429	+	1	NA	NA	NA	-65069	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.020000	0.462687	
mm_123393.1	chr14	63416944	63417144	-	1	NA	NA	NA	143	NM_007549	12143	Mm.3962	NM_007549	ENSMUSG00000014453	Blk	-	B lymphoid kinase	protein-coding	0.010000	0.582090	
mm_17545.1	chr2	29846385	29846585	-	1	NA	NA	NA	-758	NR_029838	723904		NR_029838	ENSMUSG00000065485	Mir219a-2	Mir219-2|Mirn219-2|mir-219a-2|mmu-mir-219a-2	microRNA 219a-2	ncRNA	0.045000	0.611940	-33(GTCTTTAAGAGC,-,0.00),-32(TCTTTAAGAGCT,+,0.00)
mm_22686.1	chr3	17789645	17789845	+	1	NA	NA	NA	-176	NR_033490	70441	Mm.458192	NR_033490	ENSMUSG00000100252	Mir124-2hg	100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612	Mir124-2 host gene (non-protein coding)	ncRNA	0.005000	0.502488	
mm_133304.1	chr16	77597933	77598133	+	1	NA	NA	NA	-903	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.010000	0.368159	
mm_69651.1	chr7	139638890	139639090	-	1	NA	NA	NA	44825	NM_001302546	212124	Mm.425507	NM_177212	ENSMUSG00000049571	Cfap46	9330101J02Rik|E030019B06Rik|Gm170|Ttc40	cilia and flagella associated protein 46	protein-coding	0.005000	0.437811	
mm_126938.1	chr15	91897997	91898197	+	1	NA	NA	NA	59769	NM_198927	223809	Mm.486225	NM_198927	ENSMUSG00000047295	Smgc	2310010P21Rik|DXImx49e|Muc19|Muc19/Smgc|Sfc21	submandibular gland protein C	protein-coding	0.020000	0.512438	
mm_73694.1	chr8	111621589	111621789	+	1	NA	NA	NA	8633	NM_027570	52815	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	0.010000	0.567164	
mm_111019.1	chr12	79017247	79017447	-	1	NA	NA	NA	-10070	NM_178745	268567	Mm.341747	NM_178745	ENSMUSG00000046157	Tmem229b	6330442E10Rik|9830138K24|AU019070	transmembrane protein 229B	protein-coding	0.010000	0.467662	
mm_93377.1	chr10	105532479	105532679	-	1	NA	NA	NA	41900	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.000000	0.288557	
mm_46987.1	chr5	115326874	115327074	-	1	NA	NA	NA	-203	NM_025573	108014	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0.070000	0.651741	
mm_169518.1	chr14	8800094	8800294	-	1	NA	NA	NA	133804	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	0.010000	0.507463	
mm_93508.1	chr10	114802172	114802372	-	1	NA	NA	NA	-902	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	0.095000	0.616915	
mm_119997.1	chr14	55604457	55604657	+	1	NA	NA	NA	-22	NM_001159418	16391	Mm.2032	NM_008394	ENSMUSG00000002325	Irf9	Irf-9|Isgf3g|p48	interferon regulatory factor 9	protein-coding	0.005000	0.537313	
mm_134244.1	chr16	13419749	13419949	-	1	NA	NA	NA	-29674	NR_030549	100124432		NR_030549	ENSMUSG00000076972	Mir193b	Mir193|Mirn193b|mir-193b	microRNA 193b	ncRNA	0.005000	0.452736	-57(CCTTATAGAGAG,+,0.00),-34(CCCTATAAGAAG,-,0.00)
mm_157106.1	chrX	9437765	9437965	-	1	NA	NA	NA	31459	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.412935	15(CCTTTAATACCA,+,0.00)
mm_123526.1	chr14	66750021	66750221	-	1	NA	NA	NA	114870	NM_001271760	11549	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	0.015000	0.507463	
mm_90383.1	chr10	127288406	127288606	+	1	NA	NA	NA	512	NM_001347171	110962	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.045000	0.656716	
mm_63191.1	chr7	125603359	125603559	+	1	NA	NA	NA	30	NM_021887	60504	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.030000	0.626866	
mm_43482.1	chr5	136908052	136908252	+	1	NA	NA	NA	2	NM_026073	67286	Mm.41779	NM_026073	ENSMUSG00000007987	Ift22	3110017O03Rik|AI835745|AI847427|Rabl5	intraflagellar transport 22	protein-coding	0.085000	0.626866	
mm_85735.1	chr9	108460825	108461025	-	1	NA	NA	NA	407	NM_133744	72454	Mm.46488	NM_133744	ENSMUSG00000049305	Ccdc71	2600016J21Rik	coiled-coil domain containing 71	protein-coding	0.070000	0.641791	
mm_84999.1	chr9	86858309	86858509	-	1	NA	NA	NA	21988	NM_001277982	20616	Mm.281651	NM_013669	ENSMUSG00000033419	Snap91	91kDa|AP180|F1-20|mKIAA0656	synaptosomal-associated protein 91	protein-coding	0.005000	0.417910	
mm_39310.1	chr5	8046037	8046237	+	1	NA	NA	NA	59	NM_025618	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.005000	0.447761	
mm_8361.1	chr1	150455881	150456081	-	1	NA	NA	NA	10184	NM_021400	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.015000	0.427861	
mm_116744.1	chr13	51777030	51777230	-	1	NA	NA	NA	16617	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.000000	0.522388	
mm_117427.1	chr13	74462581	74462781	-	1	NA	NA	NA	31269	NM_146231	235956	Mm.296909	NM_146231	ENSMUSG00000069208	Zfp825	-	zinc finger protein 825	protein-coding	0.040000	0.527363	
mm_44290.1	chr5	8368100	8368300	-	1	NA	NA	NA	-40	NM_001310439	11496	Mm.275895	NM_001007220	ENSMUSG00000040537	Adam22	2900022I03Rik|AI854032|MDC2	a disintegrin and metallopeptidase domain 22	protein-coding	0.090000	0.716418	
mm_47174.1	chr5	120745611	120745811	-	1	NA	NA	NA	4137	NM_145227	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.010000	0.427861	
mm_34854.1	chr4	155522436	155522636	+	1	NA	NA	NA	31175	NM_001160016	14688	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.020000	0.557214	
mm_27829.1	chr3	79097548	79097748	-	1	NA	NA	NA	47239	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.393035	
mm_133623.1	chr16	91562947	91563147	+	1	NA	NA	NA	15953	NM_008338	15980	Mm.249364	NM_008338	ENSMUSG00000022965	Ifngr2	Ifgr2|Ifgt	interferon gamma receptor 2	protein-coding	0.025000	0.507463	-82(CTCCAGAAAAGG,-,0.00),85(GTATTTAAAAGG,-,0.00)
mm_165909.1	chr4	56802222	56802422	+	1	NA	NA	NA	-7	NM_001081420	230234	Mm.268148	NM_001081420	ENSMUSG00000038827	Fam206a	simiate	family with sequence similarity 206, member A	protein-coding	0.105000	0.676617	
mm_167423.1	chr8	111687090	111687290	+	1	NA	NA	NA	2484	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.030000	0.611940	
mm_30137.1	chr3	142249564	142249764	-	1	NA	NA	NA	-80436	NM_001277216	12167	Mm.39089	NM_007560	ENSMUSG00000052430	Bmpr1b	AI385617|ALK-6|AV355320|Acvrlk6|Alk6|BMPR-1B|BMPR-IB|CFK-43a|SKR6	bone morphogenetic protein receptor, type 1B	protein-coding	0.000000	0.492537	
mm_22204.1	chr2	173578147	173578347	-	1	NA	NA	NA	94	NM_001199955	70065	Mm.425115	NM_027303	ENSMUSG00000027517	Ankrd60	1700019A24Rik|1700030G11Rik	ankyrin repeat domain 60	protein-coding	0.140000	0.751244	
mm_100115.1	chr11	115834244	115834444	+	1	NA	NA	NA	10286	NM_001252532	217325	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	lethal giant larvae homolog 2 (Drosophila)	protein-coding	0.005000	0.487562	
mm_172096.1	chr6	25557715	25557915	-	1	NA	NA	NA	132165	NM_010338	14763	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	0.045000	0.447761	
mm_140590.1	chr17	10231020	10231220	-	1	NA	NA	NA	88241	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.005000	0.308458	
mm_145241.1	chr18	50398518	50398718	+	1	NA	NA	NA	120249	NM_001004061	225497	Mm.329435	NM_001004061	ENSMUSG00000035420	Fam170a	Gm93|Znfd	family with sequence similarity 170, member A	protein-coding	0.020000	0.437811	-33(TTGTATAAAAGG,-,0.00)
mm_29796.1	chr3	127734032	127734232	-	1	NA	NA	NA	46395	NM_027808	71481	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	0.010000	0.358209	
mm_162563.1	chr1	172428807	172429007	+	1	NA	NA	NA	-46453	NM_029612	98365	Mm.150050	NM_029612	ENSMUSG00000026548	Slamf9	2310026I04Rik|AI462096|CD2F-10|CD84-H1|Cd2f10|SF2001	SLAM family member 9	protein-coding	0.000000	0.532338	-32(GGCTCTATAAGA,-,0.00)
mm_6629.1	chr1	78197015	78197215	-	1	NA	NA	NA	21	NM_008781	18505	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	0.065000	0.601990	
mm_129810.1	chr15	82994952	82995152	-	1	NA	NA	NA	28086	NM_028728	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.000000	0.462687	
mm_68431.1	chr7	109840806	109841006	-	1	NA	NA	NA	24773	NM_020052	56788	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	0.000000	0.497512	
mm_121432.1	chr14	120408412	120408612	+	1	NA	NA	NA	-69949	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.005000	0.333333	
mm_30578.1	chr4	4138221	4138421	+	1	NA	NA	NA	124	NM_001002927	18619	Mm.475097	NM_001002927	ENSMUSG00000045573	Penk	AI326464|ENK|PPA|Penk1	preproenkephalin	protein-coding	0.020000	0.562189	
mm_85915.1	chr9	111057416	111057616	-	1	NA	NA	NA	2	NM_001302376	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.030000	0.562189	
mm_32729.1	chr4	116557646	116557846	+	1	NA	NA	NA	19	NM_029868	77110	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	0.080000	0.666667	
mm_140296.1	chr17	85620866	85621066	+	1	NA	NA	NA	132	NM_011381	20473	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0.065000	0.621891	
mm_115019.1	chr13	98613136	98613336	+	1	NA	NA	NA	24174	NM_026685	68344	Mm.28766	NM_026685	ENSMUSG00000046082	Tmem174	0610009B10Rik|AA986094	transmembrane protein 174	protein-coding	0.040000	0.547264	
mm_156482.1	chrX	144317947	144318147	+	1	NA	NA	NA	81	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.120000	0.656716	
mm_142923.1	chr17	53845867	53846067	-	1	NA	NA	NA	-9	NM_026935	69083	Mm.19320	NM_026935	ENSMUSG00000023122	Sult1c2	1810008N17Rik|ST1C1|ST1C2|Sult1c1	sulfotransferase family, cytosolic, 1C, member 2	protein-coding	0.025000	0.482587	
mm_94436.1	chr11	6292540	6292740	+	1	NA	NA	NA	82	NM_001252288	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.040000	0.477612	
mm_144412.1	chr18	20961478	20961678	+	1	NA	NA	NA	16953	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.105000	0.736318	
mm_160149.1	chr7	41284200	41284400	+	1	NA	NA	NA	-27	NM_001033782	434172	Mm.247214	NM_001033782	ENSMUSG00000072259	Gm5592	EG434172	predicted gene 5592	protein-coding	0.005000	0.457711	
mm_40313.1	chr5	43868439	43868639	+	1	NA	NA	NA	-270	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.000000	0.472637	
mm_59757.1	chr7	28827423	28827623	+	1	NA	NA	NA	2185	NM_016772	51798	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.005000	0.427861	
mm_105686.1	chr11	107733575	107733775	-	1	NA	NA	NA	-17199	NM_007582	12299	Mm.57093	NM_007582	ENSMUSG00000020722	Cacng1	-	calcium channel, voltage-dependent, gamma subunit 1	protein-coding	0.010000	0.417910	
mm_69670.1	chr7	139983788	139983988	-	1	NA	NA	NA	2986	NR_106029	102465643		NR_106029	ENSMUSG00000099092	Mir7062	Gm27339|mmu-mir-7062	microRNA 7062	ncRNA	0.010000	0.567164	
mm_100084.1	chr11	115475586	115475786	+	1	NA	NA	NA	9	NM_177778	276905	Mm.38019	NM_177778	ENSMUSG00000057219	Armc7	A630084C13|BC023126	armadillo repeat containing 7	protein-coding	0.070000	0.621891	
mm_136358.1	chr16	92776021	92776221	-	1	NA	NA	NA	49953	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.005000	0.487562	
mm_132516.1	chr16	37580118	37580318	+	1	NA	NA	NA	65	NM_013547	15233	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	0.020000	0.472637	30(GAGTTTTAAAGA,-,0.00)
mm_91924.1	chr10	60331832	60332032	-	1	NA	NA	NA	-14919	NM_001159572	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.015000	0.562189	-32(GCCCATAAAGGA,-,0.00)
mm_23911.1	chr3	83043234	83043434	+	1	NA	NA	NA	6529	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.050000	0.542289	
mm_142560.1	chr17	46640029	46640229	-	1	NA	NA	NA	5015	NM_029091	74764	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0.015000	0.592040	
mm_18230.1	chr2	51933237	51933437	-	1	NA	NA	NA	1307	NM_001141982	71684	Mm.28309	NM_030243	ENSMUSG00000036249	Rbm43	0610033I05Rik	RNA binding motif protein 43	protein-coding	0.010000	0.477612	-42(CTTTATAGAGCA,+,0.00)
mm_120414.1	chr14	65357998	65358198	+	1	NA	NA	NA	-578	NM_199029	380912	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.080000	0.611940	
mm_73896.1	chr8	119425817	119426017	+	1	NA	NA	NA	-11245	NM_027950	71839	Mm.272357	NM_027950	ENSMUSG00000074063	Osgin1	1700012B18Rik|Okl38	oxidative stress induced growth inhibitor 1	protein-coding	0.010000	0.547264	
mm_118365.1	chr13	115101799	115101999	-	1	NA	NA	NA	65	NM_001033228	109700	Mm.317280	NM_001033228	ENSMUSG00000042284	Itga1	CD49A|E130012M19Rik|Vla1	integrin alpha 1	protein-coding	0.035000	0.527363	-18(GTCCCTTTAAGG,-,0.00),-16(CCCTTTAAGGTT,+,0.00)
mm_116603.1	chr13	48625483	48625683	-	1	NA	NA	NA	89	NM_207232	218232	Mm.315089	NM_207232	ENSMUSG00000038042	Ptpdc1	AI843923|AW456874|Naa-1|Ptpcd1	protein tyrosine phosphatase domain containing 1	protein-coding	0.160000	0.786070	
mm_38489.1	chr4	140826467	140826667	-	1	NA	NA	NA	15574	NR_045944	100049161	Mm.20854	NR_045944	ENSMUSG00000085918	Gm13032	OTTMUSG00000010086	predicted gene 13032	ncRNA	0.025000	0.537313	51(GCCCTTAAGAGG,-,0.00),52(CCCTTAAGAGGA,+,0.00)
mm_133835.1	chr16	95926752	95926952	+	1	NA	NA	NA	2225	NR_040484	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.015000	0.487562	-34(GCCTTTTAAAAA,-,0.00),-33(CCTTTTAAAAAG,+,0.00),-33(CCTTTTAAAAAG,-,0.00)
mm_66289.1	chr7	37924241	37924441	-	1	NA	NA	NA	95211	NM_011274	19777	Mm.387220	NM_011274	ENSMUSG00000030421	Uri1	C80913|NNX3|Rmp	URI1, prefoldin-like chaperone	protein-coding	0.015000	0.452736	
mm_65197.1	chr7	19696753	19696953	-	1	NA	NA	NA	1545	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.105000	0.656716	
mm_161130.1	chr12	112929641	112929841	-	1	NA	NA	NA	-246	NM_010588	16450	Mm.186146	NM_010588	ENSMUSG00000002799	Jag2	D12Ggc2e|Serh|mJagged2-1|sm	jagged 2	protein-coding	0.175000	0.791045	
mm_103721.1	chr11	79530355	79530555	-	1	NA	NA	NA	154	NM_146023	101488212	Mm.439665	NM_146023	ENSMUSG00000070354	Gm21975	Evi2a-evi2b	predicted gene 21975	protein-coding	0.020000	0.427861	-26(CTCTTTAAAAAA,-,0.00)
mm_83353.1	chr9	44361548	44361748	-	1	NA	NA	NA	22	NM_027889	71732	Mm.295013	NM_027889	ENSMUSG00000032127	Vps11	1200011A11Rik	VPS11, CORVET/HOPS core subunit	protein-coding	0.080000	0.611940	
mm_151877.1	chr19	5798315	5798515	-	1	NA	NA	NA	-2434	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.000000	0.298507	
mm_14821.1	chr2	146908265	146908465	+	1	NA	NA	NA	52476	NM_001033298	228730	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	0.000000	0.318408	
mm_56361.1	chr6	93893236	93893436	-	1	NA	NA	NA	19627	NR_104594	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.005000	0.368159	
mm_78807.1	chr9	44066950	44067150	+	1	NA	NA	NA	29	NM_198092	53376	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.105000	0.711443	
mm_136803.1	chr17	12378512	12378712	+	1	NA	NA	NA	3	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.005000	0.467662	
mm_45097.1	chr5	44406248	44406448	-	1	NA	NA	NA	-179742	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.015000	0.447761	
mm_157789.1	chrX	73824900	73825100	-	1	NA	NA	NA	-31	NM_001290540	245469	Mm.103782	NM_001029868	ENSMUSG00000002006	Pdzd4	B230341P03|D130075J17Rik|Kiaa1444-hp|LU1|PDZRN4L|Pdzk4|Pdzrnk4l|Xlu	PDZ domain containing 4	protein-coding	0.115000	0.741294	
mm_123318.1	chr14	62530953	62531153	-	1	NA	NA	NA	-24684	NM_001243857	629059	Mm.291864	NM_001243857	ENSMUSG00000035184	Fam124a	EG629059	family with sequence similarity 124, member A	protein-coding	0.010000	0.398010	
mm_105615.1	chr11	106788393	106788593	-	1	NA	NA	NA	1	NM_007840	13207	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0.110000	0.686567	-34(GACTATAAAAGC,-,0.00)
mm_124623.1	chr15	3290665	3290865	+	1	NA	NA	NA	12761	NM_001166063	100039139	Mm.455610	NM_001166063	ENSMUSG00000091119	Ccdc152	ENSMUSG00000071814	coiled-coil domain containing 152	protein-coding	0.015000	0.527363	
mm_9955.1	chr1	191025925	191026125	-	1	NA	NA	NA	165	NM_001081259	226844	Mm.134053	NM_198025	ENSMUSG00000066595	Mfsd7b	9630055N22Rik|FLVCR|Flvcr1	major facilitator superfamily domain containing 7B	protein-coding	0.135000	0.771144	
mm_66796.1	chr7	47132529	47132729	-	1	NA	NA	NA	-31	NM_001163565	19259	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0.080000	0.726368	
mm_112022.1	chr12	111445097	111445297	-	1	NA	NA	NA	2536	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.025000	0.552239	
mm_154509.1	chrM	12059	12259	-	1	NA	NA	NA	NA	NA									0.020000	0.393035	
mm_94416.1	chr11	5862939	5863139	+	1	NA	NA	NA	1173	NM_001291857	11568	Mm.3317	NM_009636	ENSMUSG00000020473	Aebp1	ACLP	AE binding protein 1	protein-coding	0.010000	0.567164	
mm_47028.1	chr5	115652728	115652928	-	1	NA	NA	NA	7255	NR_105997	102465623		NR_105997	ENSMUSG00000099254	Mir7030	Gm27267|mmu-mir-7030	microRNA 7030	ncRNA	0.045000	0.587065	
mm_42856.1	chr5	122210241	122210441	+	1	NA	NA	NA	54	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.000000	0.567164	
mm_107532.1	chr12	40538741	40538941	+	1	NA	NA	NA	92788	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.015000	0.348259	
mm_96959.1	chr11	70640133	70640333	+	1	NA	NA	NA	1111	NM_010326	14723	Mm.377085	NM_010326	ENSMUSG00000050675	Gp1ba	GPIba|GPIbalpha	glycoprotein 1b, alpha polypeptide	protein-coding	0.020000	0.502488	
mm_15445.1	chr2	157367493	157367693	+	1	NA	NA	NA	-1	NM_026968	69161	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	0.110000	0.646766	
mm_10653.1	chr2	20669742	20669942	+	1	NA	NA	NA	150329	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.005000	0.477612	
mm_19348.1	chr2	90917641	90917841	-	1	NA	NA	NA	309	NM_025576	66461	Mm.23926	NM_025576		Ptpmt1	1110001D10Rik|2810004N20Rik|PLIP	protein tyrosine phosphatase, mitochondrial 1	protein-coding	0.125000	0.766169	
mm_115930.1	chr13	23571104	23571304	-	1	NA	NA	NA	16	NM_178187	319166	Mm.261665	NM_178187	ENSMUSG00000069272	Hist1h2ae	1190022L06	histone cluster 1, H2ae	protein-coding	0.025000	0.388060	
mm_96738.1	chr11	69775996	69776196	+	1	NA	NA	NA	10184	NM_029348	75580	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0.035000	0.646766	
mm_84702.1	chr9	72663192	72663392	-	1	NA	NA	NA	945	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.085000	0.567164	
mm_44875.1	chr5	34634809	34635009	-	1	NA	NA	NA	2205	NM_026660	68294	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	0.025000	0.517413	
mm_139226.1	chr17	47730567	47730767	+	1	NA	NA	NA	3825	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.035000	0.592040	
mm_26822.1	chr3	10335582	10335782	-	1	NA	NA	NA	-26	NM_001010834	241877	Mm.442146	NM_001010834	ENSMUSG00000058921	Slc10a5	Gm405|mP5	solute carrier family 10 (sodium/bile acid cotransporter family), member 5	protein-coding	0.010000	0.378109	
mm_139673.1	chr17	57412260	57412460	+	1	NA	NA	NA	53674	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.353234	
mm_146510.1	chr18	3337384	3337584	-	1	NA	NA	NA	105	NM_001110851	12916	Mm.5244	NM_013498	ENSMUSG00000063889	Crem	ICER|ICERI	cAMP responsive element modulator	protein-coding	0.160000	0.696517	
mm_62127.1	chr7	96951441	96951641	+	1	NA	NA	NA	14	NM_153591	244141	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.090000	0.601990	
mm_17831.1	chr2	34255372	34255572	-	1	NA	NA	NA	116573	NM_001290576	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.005000	0.358209	
mm_23634.1	chr3	66981280	66981480	+	1	NA	NA	NA	-239	NM_001302359	20429	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0.135000	0.781095	
mm_159810.1	chr5	118723905	118724105	+	1	NA	NA	NA	163286	NM_172424	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.020000	0.547264	
mm_172900.1	chr9	57477222	57477422	-	1	NA	NA	NA	-9262	NM_001301635	56807	Mm.102278	NM_020270	ENSMUSG00000040722	Scamp5	Sc5	secretory carrier membrane protein 5	protein-coding	0.035000	0.502488	-37(TTCTATAAAAAC,-,0.00)
mm_57955.1	chr6	135168046	135168246	-	1	NA	NA	NA	69	NM_013546	15199	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	0.095000	0.661692	
mm_118661.1	chr14	21831453	21831653	+	1	NA	NA	NA	-8	NM_011695	22334	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0.120000	0.746269	
mm_8413.1	chr1	152090056	152090256	-	1	NA	NA	NA	164	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik|ENSMUSG00000073540	RIKEN cDNA 1700025G04 gene	protein-coding	0.150000	0.746269	
mm_97923.1	chr11	83581982	83582182	+	1	NA	NA	NA	21	NR_036452	100504464	Mm.341706	NR_036452	ENSMUSG00000051832	E230016K23Rik	-	RIKEN cDNA E230016K23 gene	ncRNA	0.000000	0.547264	
mm_112702.1	chr13	17944179	17944379	+	1	NA	NA	NA	-62	NM_019491	56044	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0.115000	0.741294	
mm_17462.1	chr2	28557880	28558080	-	1	NA	NA	NA	5423	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.040000	0.532338	
mm_126323.1	chr15	79739484	79739684	+	1	NA	NA	NA	2952	NM_194342	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.020000	0.547264	
mm_109590.1	chr12	112619994	112620194	+	1	NA	NA	NA	47	NM_007421	11565	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.100000	0.721393	
mm_108097.1	chr12	74804058	74804258	+	1	NA	NA	NA	373174	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0.020000	0.398010	
mm_47619.1	chr5	125245687	125245887	-	1	NA	NA	NA	-66573	NM_001253904	20602	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.055000	0.611940	
mm_113093.1	chr13	24105473	24105673	+	1	NA	NA	NA	-114359	NM_145399	214189	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.000000	0.462687	-36(AGATTTATAAGG,-,0.00)
mm_113401.1	chr13	33921217	33921417	+	1	NA	NA	NA	-14715	NR_040707	68808	Mm.443347	NR_040707	ENSMUSG00000085457	1110046J04Rik	-	RIKEN cDNA 1110046J04 gene	ncRNA	0.030000	0.482587	
mm_61448.1	chr7	75586084	75586284	+	1	NA	NA	NA	130650	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.035000	0.562189	
mm_35120.1	chr4	11007488	11007688	-	1	NA	NA	NA	31	NM_175175	71801	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.155000	0.766169	
mm_133083.1	chr16	59639102	59639302	+	1	NA	NA	NA	137	NM_019665	56297	Mm.392505	NM_019665	ENSMUSG00000022722	Arl6	1110018H24Rik|2210411E14Rik|BBS3	ADP-ribosylation factor-like 6	protein-coding	0.085000	0.631841	
mm_96652.1	chr11	69368221	69368421	+	1	NA	NA	NA	1105	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.045000	0.626866	
mm_141227.1	chr17	27364379	27364579	-	1	NA	NA	NA	6382	NR_106077	102466228		NR_106077	ENSMUSG00000106215	Mir7218	mmu-mir-7218	microRNA 7218	ncRNA	0.005000	0.527363	
mm_49667.1	chr6	31221723	31221923	+	1	NA	NA	NA	1472	NR_040261	73652	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.015000	0.402985	
mm_6046.1	chr1	59764734	59764934	-	1	NA	NA	NA	555	NM_007561	12168	Mm.7106	NM_007561	ENSMUSG00000067336	Bmpr2	2610024H22Rik|AL117858|AW546137|BB189135|BMP-2|BMPR-2|BMPR-II|BMPRII|BRK-3|Gm20272	bone morphogenetic protein receptor, type II (serine/threonine kinase)	protein-coding	0.055000	0.641791	
mm_159132.1	chr2	75659167	75659367	+	1	NA	NA	NA	8	NM_053263	229279	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.120000	0.661692	
mm_111913.1	chr12	108835721	108835921	-	1	NA	NA	NA	55	NM_181328	214663	Mm.266264	NM_181328	ENSMUSG00000021265	Slc25a29	C030003J19Rik|CACL|mCACL	solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29	protein-coding	0.130000	0.736318	-1(GCTTTTCTAGGA,+,0.00)
mm_64032.1	chr7	140769544	140769744	+	1	NA	NA	NA	5812	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.025000	0.477612	
mm_168604.1	chr11	75066748	75066948	-	1	NA	NA	NA	-857	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.050000	0.517413	
mm_173294.1	chrY	40026790	40026990	-	1	NA	NA	NA	2069070	NM_207162	382133	Mm.463885	NM_207162	ENSMUSG00000094575	Gm20738	-	predicted gene, 20738	protein-coding	0.020000	0.472637	-32(TCCTTTAAAAGC,-,0.00),-31(CCTTTAAAAGCT,+,0.00)
mm_60742.1	chr7	45447802	45448002	+	1	NA	NA	NA	11984	NM_010240	14325	Mm.30357	NM_010240	ENSMUSG00000050708	Ftl1	Ftl|Ftl-1|L-ferritin	ferritin light polypeptide 1	protein-coding	0.030000	0.592040	79(CCTTTTCAACAG,+,0.00)
mm_92810.1	chr10	81394710	81394910	-	1	NA	NA	NA	1746	NM_001099917	72273	Mm.253147	NM_001099917	ENSMUSG00000078439	Smim24	2210404O07Rik	small integral membrane protein 24	protein-coding	0.015000	0.507463	
mm_130369.1	chr15	97812160	97812360	-	1	NA	NA	NA	2603	NM_001204281	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.025000	0.631841	
mm_148665.1	chr19	5609750	5609950	+	1	NA	NA	NA	-143	NR_037603	81601	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	0.105000	0.701493	
mm_129585.1	chr15	79742440	79742640	-	1	NA	NA	NA	-4	NM_001205345	223697	Mm.202715	NM_194342	ENSMUSG00000042524	Sun2	B230369L08Rik|C030011B15|Unc84b	Sad1 and UNC84 domain containing 2	protein-coding	0.120000	0.701493	
mm_158141.1	chrX	103311728	103311928	-	1	NA	NA	NA	-9570	NM_007674	12592	Mm.4353	NM_007674	ENSMUSG00000031326	Cdx4	Cdx-3|Cdx-4|Cdx3	caudal type homeobox 4	protein-coding	0.010000	0.462687	
mm_63919.1	chr7	139254848	139255048	+	1	NA	NA	NA	6466	NM_001098636	101631	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.015000	0.597015	
mm_124446.1	chr14	118876795	118876995	-	1	NA	NA	NA	21945	NM_001160099	58187	Mm.390755	NM_021386	ENSMUSG00000022132	Cldn10	6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e	claudin 10	protein-coding	0.015000	0.298507	
mm_98764.1	chr11	96603677	96603877	+	1	NA	NA	NA	139186	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.000000	0.288557	-44(CTTTATATAGTA,+,0.00),27(GCTTATAAAGAA,+,0.00)
mm_169641.1	chr1	55084459	55084659	-	1	NA	NA	NA	3373	NM_010477	15510	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	0.020000	0.437811	
mm_18108.1	chr2	44988966	44989166	-	1	NA	NA	NA	34111	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.050000	0.527363	
mm_2305.1	chr1	91539956	91540156	+	1	NA	NA	NA	-509	NM_001039126	65247	Mm.234152	NM_023046	ENSMUSG00000026311	Asb1	1700029O08Rik|1700054C17Rik|AI426616|AI851378|mKIAA1146	ankyrin repeat and SOCS box-containing 1	protein-coding	0.045000	0.592040	
mm_140079.1	chr17	75178711	75178911	+	1	NA	NA	NA	30	NM_001331235	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.020000	0.512438	
mm_128427.1	chr15	49942750	49942950	-	1	NA	NA	NA	946199	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.015000	0.432836	-32(GCATATATACCC,+,0.00)
mm_110941.1	chr12	76609314	76609514	-	1	NA	NA	NA	-61489	NR_046044	100504549	Mm.440349	NR_046044		AI463170	-	expressed sequence AI463170	ncRNA	0.005000	0.542289	
mm_170579.1	chr1	95498559	95498759	+	1	NA	NA	NA	168935	NM_009183	20452	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.055000	0.587065	
mm_4639.1	chr1	179959877	179960077	+	1	NA	NA	NA	-783	NM_001346804	226751	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	0.160000	0.830846	
mm_13344.1	chr2	102899326	102899526	+	1	NA	NA	NA	2239	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.010000	0.522388	18(GCTTTACAAGGG,+,0.00)
mm_124707.1	chr15	6552070	6552270	+	1	NA	NA	NA	-27677	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.030000	0.502488	
mm_15413.1	chr2	156781091	156781291	+	1	NA	NA	NA	5727	NM_172118	98932	Mm.271770	NM_172118	ENSMUSG00000067818	Myl9	AI327049|MLC20|Mylc2c|RLC-C	myosin, light polypeptide 9, regulatory	protein-coding	0.045000	0.567164	
mm_171726.1	chr4	88599771	88599971	-	1	NA	NA	NA	3505	NM_177361	242519	Mm.246618	NM_177361	ENSMUSG00000073811	Ifna12	-	interferon alpha 12	protein-coding	0.030000	0.527363	
mm_69184.1	chr7	127260508	127260708	-	1	NA	NA	NA	59	NM_023203	66422	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	0.100000	0.641791	
mm_156115.1	chrX	114474545	114474745	+	1	NA	NA	NA	312	NM_001290477	237010	Mm.132583	NM_172781	ENSMUSG00000025597	Klhl4	B130014A11|C130018J01Rik	kelch-like 4	protein-coding	0.030000	0.497512	
mm_59589.1	chr7	28131559	28131759	+	1	NA	NA	NA	2193	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.040000	0.552239	-17(GGCCTTTAAAGT,-,0.00),-16(GCCTTTAAAGTA,+,0.00)
mm_75879.1	chr8	70776537	70776737	-	1	NA	NA	NA	75	NM_008841	18709	Mm.12945	NM_008841	ENSMUSG00000031834	Pik3r2	p85beta	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 2 (p85 beta)	protein-coding	0.145000	0.731343	
mm_138897.1	chr17	43568422	43568622	+	1	NA	NA	NA	71	NM_013737	27226	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.040000	0.646766	
mm_62309.1	chr7	100227530	100227730	+	1	NA	NA	NA	23	NM_027629	70974	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0.145000	0.751244	
mm_11610.1	chr2	34406855	34407055	+	1	NA	NA	NA	104	NM_001290626	227743	Mm.270866	NM_177345	ENSMUSG00000038696	Mapkap1	AI591529|D230039K05Rik|Sin1	mitogen-activated protein kinase associated protein 1	protein-coding	0.120000	0.751244	
mm_69811.1	chr7	141263624	141263824	-	1	NA	NA	NA	2700	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.040000	0.631841	
mm_132164.1	chr16	32271437	32271637	+	1	NA	NA	NA	-72	NM_183283	69576	Mm.432545	NM_183283	ENSMUSG00000046345	Smco1	2310010M20Rik	single-pass membrane protein with coiled-coil domains 1	protein-coding	0.030000	0.507463	-92(GGCTATTAAAAG,-,0.00)
mm_71135.1	chr8	39005816	39006016	+	1	NA	NA	NA	49	NM_030254	80286	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	0.075000	0.681592	
mm_35988.1	chr4	55528476	55528676	-	1	NA	NA	NA	3899	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.015000	0.402985	
mm_7918.1	chr1	133753748	133753948	-	1	NA	NA	NA	-101	NM_213616	381290	Mm.188617	NM_213616	ENSMUSG00000026463	Atp2b4	Pmca4	ATPase, Ca++ transporting, plasma membrane 4	protein-coding	0.010000	0.482587	0(TCATTTAAACCC,+,0.00)
mm_75488.1	chr8	48843716	48843916	-	1	NA	NA	NA	-169126	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.050000	0.527363	
mm_133075.1	chr16	58726244	58726444	+	1	NA	NA	NA	-1566	NR_045518	224250	Mm.29482	NM_171826	ENSMUSG00000022744	Cldnd1	1110019C08Rik|AA407103|AI849195|AW489850|Cldn25	claudin domain containing 1	protein-coding	0.020000	0.507463	
mm_119638.1	chr14	51902877	51903077	+	1	NA	NA	NA	9367	NM_001039676	214922	Mm.281343	NM_001039676	ENSMUSG00000072572	Slc39a2	F730005G13Rik|Gm1789|Gm289|Zip2	solute carrier family 39 (zinc transporter), member 2	protein-coding	0.010000	0.482587	
mm_172331.1	chr7	10845965	10846165	-	1	NA	NA	NA	-47000	NR_033707	434555	Mm.379679	NR_033707	ENSMUSG00000110097	Zscan4a	BQ559217	zinc finger and SCAN domain containing 4A	pseudo	0.015000	0.582090	
mm_98687.1	chr11	96298691	96298891	+	1	NA	NA	NA	-380	NM_008269	15414	Mm.215	NM_008269	ENSMUSG00000000690	Hoxb6	Hox-2.2	homeobox B6	protein-coding	0.030000	0.522388	
mm_84921.1	chr9	80265327	80265527	-	1	NA	NA	NA	100393	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.010000	0.417910	
mm_170650.1	chr2	10068553	10068753	-	1	NA	NA	NA	11857	NM_020615	11949	Mm.12677	NM_020615	ENSMUSG00000025781	Atp5c1	1700094F02Rik	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1	protein-coding	0.045000	0.537313	
mm_14603.1	chr2	136501872	136502072	+	1	NA	NA	NA	-30349	NM_175667	319196	Mm.477841	NM_175667	ENSMUSG00000074771	Ankef1	AV276460|Ankrd5	ankyrin repeat and EF-hand domain containing 1	protein-coding	0.005000	0.378109	
mm_135015.1	chr16	32487107	32487307	-	1	NA	NA	NA	672	NM_145932	106407	Mm.476915	NM_145932	ENSMUSG00000035699	Slc51a	AV001382|AW261577|D630035O19Rik|OSTalpha|Osta	solute carrier family 51, alpha subunit	protein-coding	0.015000	0.507463	
mm_23517.1	chr3	60595496	60595696	+	1	NA	NA	NA	94417	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.015000	0.333333	-10(TCTTTTAGGGTC,+,0.00)
mm_53122.1	chr6	125113804	125114004	+	1	NA	NA	NA	16880	NR_106012	102466272		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	0.030000	0.492537	
mm_32895.1	chr4	118967996	118968196	+	1	NA	NA	NA	6129	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.045000	0.572139	
mm_155951.1	chrX	105080120	105080320	+	1	NA	NA	NA	464	NM_026312	67683	Mm.273405	NM_026312	ENSMUSG00000031226	Pbdc1	2610029G23Rik	polysaccharide biosynthesis domain containing 1	protein-coding	0.010000	0.407960	70(GTTTTTAGAGAA,+,0.00),82(CCTTTAAAATGA,+,0.00)
mm_172939.1	chr9	78821591	78821791	-	1	NA	NA	NA	206145	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.135000	0.671642	
mm_151253.1	chr19	53929186	53929386	+	1	NA	NA	NA	-15020	NM_001168505	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.000000	0.228856	
mm_103538.1	chr11	77489933	77490133	-	1	NA	NA	NA	-355	NM_172945	268445	Mm.39296	NM_172945	ENSMUSG00000037907	Ankrd13b	AW124583|B930093C12Rik	ankyrin repeat domain 13b	protein-coding	0.115000	0.701493	
mm_24685.1	chr3	94974606	94974806	+	1	NA	NA	NA	-25	NM_001293715	107650	Mm.217222	NM_175356	ENSMUSG00000038861	Pi4kb	ESTM41|PI4K-beta|PI4Kbeta|Pik4cb	phosphatidylinositol 4-kinase, catalytic, beta polypeptide	protein-coding	0.050000	0.606965	
mm_140889.1	chr17	23975109	23975309	-	1	NA	NA	NA	21	NM_013921	30943	Mm.142568	NM_013921	ENSMUSG00000024124	Prss30	2010015P21Rik|Disp|Disp1|Tmprss8	protease, serine 30	protein-coding	0.020000	0.497512	
mm_14045.1	chr2	122264764	122264964	+	1	NA	NA	NA	30025	NM_146126	20322	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	0.000000	0.487562	
mm_25578.1	chr3	116861568	116861768	+	1	NA	NA	NA	-12	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.055000	0.572139	
mm_8571.1	chr1	155527061	155527261	-	1	NA	NA	NA	-50	NR_132128	433367	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0.030000	0.442786	
mm_172793.1	chr9	110940243	110940443	-	1	NA	NA	NA	5815	NM_011562	21667	Mm.5090	NM_011562	ENSMUSG00000032494	Tdgf1	CR1|cripto	teratocarcinoma-derived growth factor 1	protein-coding	0.005000	0.407960	-98(ACTTTTAAACAG,+,0.00)
mm_107348.1	chr12	32820273	32820473	+	1	NA	NA	NA	38	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.160000	0.815920	
mm_104582.1	chr11	96968612	96968812	-	1	NA	NA	NA	8976	NM_030220	78912	Mm.491183	NM_030220	ENSMUSG00000018678	Sp2	4930480I16Rik|mKIAA0048	Sp2 transcription factor	protein-coding	0.015000	0.601990	
mm_89452.1	chr10	93160601	93160801	+	1	NA	NA	NA	-175	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.100000	0.592040	
mm_154194.1	chr19	58860918	58861118	-	1	NA	NA	NA	-34	NM_175199	73442	Mm.39739	NM_175199	ENSMUSG00000025092	Hspa12a	1700063D12Rik|AI118035|AI840429|AW048913|AW556406|D5Mgi40|Gm19925|mKIAA0417	heat shock protein 12A	protein-coding	0.075000	0.701493	
mm_168042.1	chrY	90744277	90744477	-	1	NA	NA	NA	10673	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.060000	0.621891	
mm_8092.1	chr1	135813062	135813262	-	1	NA	NA	NA	-5436	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding	0.010000	0.552239	
mm_17044.1	chr2	20924803	20925003	-	1	NA	NA	NA	42818	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.005000	0.308458	
mm_14857.1	chr2	148713644	148713844	+	1	NA	NA	NA	18676	NM_019632	17957	Mm.274308	NM_019632	ENSMUSG00000027438	Napb	Brp14|E161|I47|SNARE|b-SNAP	N-ethylmaleimide sensitive fusion protein attachment protein beta	protein-coding	0.000000	0.308458	
mm_58640.1	chr7	6155706	6155906	+	1	NA	NA	NA	165	NM_001013012	67109	Mm.3254	NM_001013012	ENSMUSG00000046792	Zfp787	2210018M03Rik|Znf787	zinc finger protein 787	protein-coding	0.140000	0.761194	
mm_7145.1	chr1	91251291	91251491	-	1	NA	NA	NA	1072	NM_026454	67921	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0.005000	0.467662	
mm_56305.1	chr6	91796158	91796358	-	1	NA	NA	NA	11135	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.025000	0.656716	
mm_85784.1	chr9	109059591	109059791	-	1	NA	NA	NA	32	NM_011637	22040	Mm.439964	NM_011637	ENSMUSG00000049734	Trex1	AU041952	three prime repair exonuclease 1	protein-coding	0.010000	0.512438	
mm_162155.1	chrX	83487777	83487977	-	1	NA	NA	NA	47	NM_021898	100502723	Mm.383210	NM_021898	ENSMUSG00000035522	Tsga8	Halap-X|Halapx	testis specific gene A8	protein-coding	0.030000	0.527363	
mm_57792.1	chr6	129274417	129274617	-	1	NA	NA	NA	852	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.010000	0.383085	
mm_35791.1	chr4	46509214	46509414	-	1	NA	NA	NA	19985	NM_053179	94181	Mm.249349	NM_053179	ENSMUSG00000028334	Nans	4632418E04Rik|BB056474|Sas	N-acetylneuraminic acid synthase (sialic acid synthase)	protein-coding	0.005000	0.368159	
mm_130357.1	chr15	97767562	97767762	-	1	NA	NA	NA	4	NM_001177810	223864	Mm.24028	NM_144850	ENSMUSG00000022469	Rapgef3	2310016P22Rik|9330170P05Rik|Epac|Epac1	Rap guanine nucleotide exchange factor (GEF) 3	protein-coding	0.050000	0.681592	
mm_35004.1	chr4	156235925	156236125	+	1	NA	NA	NA	15	NM_021303	57741	Mm.423051	NM_021303	ENSMUSG00000095567	Noc2l	AA410003|AF155546|NIR	NOC2 like nucleolar associated transcriptional repressor	protein-coding	0.150000	0.776119	
mm_107518.1	chr12	40446054	40446254	+	1	NA	NA	NA	101	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.140000	0.731343	
mm_61857.1	chr7	88309368	88309568	+	1	NA	NA	NA	31383	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.005000	0.432836	
mm_9456.1	chr1	172894489	172894689	-	1	NA	NA	NA	465	NM_011318	20219	Mm.330510	NM_011318	ENSMUSG00000026542	Apcs	Sap	serum amyloid P-component	protein-coding	0.015000	0.427861	
mm_98787.1	chr11	96929192	96929392	+	1	NA	NA	NA	-32	NM_146026	217138	Mm.342551	NM_146026	ENSMUSG00000047040	Prr15l	Atad4|BC022765|E230006A12Rik	proline rich 15-like	protein-coding	0.010000	0.572139	
mm_95230.1	chr11	44519368	44519568	+	1	NA	NA	NA	91	NM_001166553	74315	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.070000	0.671642	
mm_50855.1	chr6	55037940	55038140	+	1	NA	NA	NA	39	NM_180678	353172	Mm.250004	NM_180678	ENSMUSG00000029777	Gars	GENA202|Gena201|Nmf249|Sgrp23	glycyl-tRNA synthetase	protein-coding	0.155000	0.756219	
mm_82476.1	chr9	16502130	16502330	-	1	NA	NA	NA	-123999	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.095000	0.681592	
mm_26270.1	chr3	142503290	142503490	+	1	NA	NA	NA	6456	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.000000	0.457711	
mm_135910.1	chr16	67545861	67546061	-	1	NA	NA	NA	74947	NM_001347247	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.005000	0.432836	
mm_153543.1	chr19	42052988	42053188	-	1	NA	NA	NA	860	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	0.020000	0.537313	
mm_74898.1	chr8	25169169	25169369	-	1	NA	NA	NA	-10036	NR_106187	102467006		NR_106187	ENSMUSG00000099142	Mir8108	Gm27484|mmu-mir-8108	microRNA 8108	ncRNA	0.025000	0.542289	
mm_158212.1	chrX	105875382	105875582	-	1	NA	NA	NA	53890	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.015000	0.427861	
mm_30667.1	chr4	10946491	10946691	+	1	NA	NA	NA	61028	NM_175175	71801	Mm.34351	NM_175175	ENSMUSG00000049969	Plekhf2	1110070J07Rik|AA673237|ZFYVE18	pleckstrin homology domain containing, family F (with FYVE domain) member 2	protein-coding	0.035000	0.447761	
mm_90676.1	chr10	128908872	128909072	+	1	NA	NA	NA	53	NM_001042580	12512	Mm.371552	NM_007653	ENSMUSG00000025351	Cd63	C75951|ME491|Tspan30	CD63 antigen	protein-coding	0.030000	0.452736	-83(CTTTATATACAG,+,0.00)
mm_115940.1	chr13	23683854	23684054	-	1	NA	NA	NA	5	NM_178189	319164	Mm.261973	NM_178189	ENSMUSG00000069270	Hist1h2ac	-	histone cluster 1, H2ac	protein-coding	0.045000	0.492537	-40(TACTATAAAAGC,-,0.00)
mm_154694.1	chrX	8051493	8051693	+	1	NA	NA	NA	22720	NM_001290716	20937	Mm.9244	NM_011514	ENSMUSG00000039231	Suv39h1	AI852103|AL022883|DXHXS7466e|H3-K9-HMTase 1|KMT1A|mIS6	suppressor of variegation 3-9 homolog 1 (Drosophila)	protein-coding	0.020000	0.497512	87(CTTTATAAAAGC,+,0.00),87(CTTTATAAAAGC,-,0.00)
mm_159046.1	chr1	182764980	182765180	+	1	NA	NA	NA	174	NM_144796	96935	Mm.331052	NM_144796	ENSMUSG00000038576	Susd4	AI848994|E430021N18Rik|N28096	sushi domain containing 4	protein-coding	0.030000	0.552239	
mm_51509.1	chr6	83137012	83137212	+	1	NA	NA	NA	28	NM_009106	20166	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0.055000	0.606965	
mm_435.1	chr1	34579623	34579823	+	1	NA	NA	NA	30	NM_213727	211383	Mm.330696	NM_213727	ENSMUSG00000045174	Amer3	9430069J07Rik|Fam123c	APC membrane recruitment 3	protein-coding	0.135000	0.761194	
mm_173133.1	chrX	19364066	19364266	-	1	NA	NA	NA	-217195	NR_029807	723828		NR_029807	ENSMUSG00000065471	Mir222	Mirn222|mir-222|mmu-mir-222	microRNA 222	ncRNA	0.015000	0.507463	
mm_6211.1	chr1	66817509	66817709	-	1	NA	NA	NA	-14	NM_001122738	68691	Mm.240912	NM_177645	ENSMUSG00000026004	Kansl1l	1110028C15Rik|1190030G24|AI427598|C430010P07Rik|mKIAA4189	KAT8 regulatory NSL complex subunit 1-like	protein-coding	0.150000	0.800995	
mm_137362.1	chr17	25369233	25369433	+	1	NA	NA	NA	-1220	NM_012034	26945	Mm.180108	NM_012034	ENSMUSG00000033200	Tpsg1	Prss31|Tmt	tryptase gamma 1	protein-coding	0.005000	0.527363	
mm_3861.1	chr1	160978575	160978775	+	1	NA	NA	NA	69	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.015000	0.398010	25(GACTTTAAGGGG,-,0.00),86(TGCCTTAAATGG,-,0.00),88(CCTTAAATGGAA,+,0.00)
mm_127145.1	chr15	98492300	98492500	+	1	NA	NA	NA	-5074	NM_001001807	258502	Mm.377539	NM_001001807	ENSMUSG00000054036	Olfr279	MOR122-1|Olfr234|Olfr234-ps1|Olfr279-ps1	olfactory receptor 279	protein-coding	0.015000	0.567164	-35(TGCTCTATAAAG,-,0.00),-33(CTCTATAAAGGG,+,0.00),-33(CTCTATAAAGGG,-,0.00)
mm_151347.1	chr19	55895487	55895687	+	1	NA	NA	NA	266	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.090000	0.721393	
mm_54787.1	chr6	41557726	41557926	-	1	NA	NA	NA	36050	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.020000	0.542289	-82(TACCATAAAGGG,-,0.00)
mm_122839.1	chr14	54723976	54724176	-	1	NA	NA	NA	-11902	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.010000	0.542289	
mm_158035.1	chrX	98599355	98599555	-	1	NA	NA	NA	291570	NM_052976	94190	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	0.000000	0.313433	
mm_60909.1	chr7	46753345	46753545	+	1	NA	NA	NA	1612	NM_011314	20209	Mm.200941	NM_011314	ENSMUSG00000057465	Saa2	AW111173|Saa-2|Saa1	serum amyloid A 2	protein-coding	0.015000	0.552239	
mm_34326.1	chr4	141901892	141902092	+	1	NA	NA	NA	-27072	NM_025994	27984	Mm.395598	NM_025994	ENSMUSG00000040659	Efhd2	2600015J22Rik|AA408606|D4Wsu27e	EF hand domain containing 2	protein-coding	0.020000	0.592040	
mm_100240.1	chr11	117248997	117249197	+	1	NA	NA	NA	-17149	NM_001113487	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.045000	0.507463	
mm_72027.1	chr8	70757993	70758193	+	1	NA	NA	NA	2828	NM_183170	234384	Mm.213010	NM_183170	ENSMUSG00000035559	Mpv17l2	Fksg24	MPV17 mitochondrial membrane protein-like 2	protein-coding	0.045000	0.587065	
mm_23981.1	chr3	86038764	86038964	+	1	NA	NA	NA	-36373	NM_001001650	368202	Mm.253822	NM_001001650	ENSMUSG00000049013	Prss48	Esspl|Gm1019	protease, serine 48	protein-coding	0.000000	0.507463	64(GCCTAGATAAGG,-,0.00)
mm_110710.1	chr12	69357051	69357251	-	1	NA	NA	NA	25	NM_025441	66244	Mm.46705	NM_025441	ENSMUSG00000020982	Nemf	1500011I12Rik|4933405E14Rik|Sdccag1	nuclear export mediator factor	protein-coding	0.080000	0.552239	
mm_4409.1	chr1	172481805	172482005	+	1	NA	NA	NA	-308	NM_001145800	93842	Mm.214530	NM_033608	ENSMUSG00000037995	Igsf9	644ETD8|Dasm1|Kiaa1355-hp|NRT1|Ncaml|mKIAA1355	immunoglobulin superfamily, member 9	protein-coding	0.050000	0.557214	
mm_145324.1	chr18	54971193	54971393	+	1	NA	NA	NA	18887	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.000000	0.368159	
mm_79257.1	chr9	50752790	50752990	+	1	NA	NA	NA	-81	NM_001289785	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.010000	0.577114	
mm_136138.1	chr16	87354080	87354280	-	1	NA	NA	NA	-5	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0.080000	0.547264	
mm_3064.1	chr1	134182064	134182264	+	1	NA	NA	NA	-240	NM_007695	12654	Mm.38274	NM_007695	ENSMUSG00000064246	Chil1	AW208766|Brp39|Chi3l1|Gp39	chitinase-like 1	protein-coding	0.010000	0.537313	
mm_112847.1	chr13	20835947	20836147	+	1	NA	NA	NA	41934	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.373134	
mm_46116.1	chr5	92363205	92363405	-	1	NA	NA	NA	-9	NR_038116	56066	Mm.131723	NM_019494	ENSMUSG00000060183	Cxcl11	Cxc11|H174|I-tac|Ip9|Itac|Scyb11|Scyb9b|b-R1|betaR1	chemokine (C-X-C motif) ligand 11	protein-coding	0.015000	0.517413	-17(GTCTATAAATGC,-,0.00)
mm_134666.1	chr16	22257730	22257930	-	1	NA	NA	NA	8175	NM_001330554	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta homolog (Drosophila)	protein-coding	0.000000	0.283582	
mm_12996.1	chr2	90885809	90886009	+	1	NA	NA	NA	123	NM_026161	67445	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0.100000	0.711443	
mm_132956.1	chr16	49970680	49970880	+	1	NA	NA	NA	-9680	NR_045001	628951	Mm.428032	NR_045001		Gm6936	-	predicted gene 6936	ncRNA	0.000000	0.427861	
mm_81970.1	chr9	120959923	120960123	+	1	NA	NA	NA	4937	NR_106058	102465661		NR_106058	ENSMUSG00000106193	Mir7090	mmu-mir-7090	microRNA 7090	ncRNA	0.020000	0.388060	
mm_100241.1	chr11	117266073	117266273	+	1	NA	NA	NA	-73	NM_001113487	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.075000	0.726368	
mm_49116.1	chr6	8509699	8509899	+	1	NA	NA	NA	199	NM_133236	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.180000	0.800995	
mm_59871.1	chr7	30232230	30232430	+	1	NA	NA	NA	256	NM_027259	69920	Mm.440028	NM_027259	ENSMUSG00000019738	Polr2i	2810002B19Rik	polymerase (RNA) II (DNA directed) polypeptide I	protein-coding	0.115000	0.656716	
mm_86636.1	chr10	14073765	14073965	+	1	NA	NA	NA	107486	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.015000	0.353234	
mm_131611.1	chr16	19241179	19241379	+	1	NA	NA	NA	45462	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.010000	0.457711	
mm_72445.1	chr8	83165413	83165613	+	1	NA	NA	NA	161	NM_027758	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.095000	0.706468	
mm_165412.1	chr2	144698122	144698322	+	1	NA	NA	NA	98269	NM_025314	66044	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	0.055000	0.532338	
mm_81154.1	chr9	107288931	107289131	+	1	NA	NA	NA	365	NM_001316691	102626	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0.020000	0.487562	
mm_67857.1	chr7	98943256	98943456	-	1	NA	NA	NA	104511	NM_001285795	22411	Mm.22182	NM_009519	ENSMUSG00000015957	Wnt11	-	wingless-type MMTV integration site family, member 11	protein-coding	0.010000	0.373134	
mm_17747.1	chr2	32714833	32715033	-	1	NA	NA	NA	-1961	NR_039536	100628606		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0.015000	0.587065	
mm_159270.1	chr2	163918813	163919013	-	1	NA	NA	NA	-230	NM_183023	241770	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	0.170000	0.825871	
mm_117362.1	chr13	70749984	70750184	-	1	NA	NA	NA	91727	NM_172053	271127	Mm.115970	NM_172053	ENSMUSG00000049538	Adamts16	-	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 16	protein-coding	0.000000	0.323383	14(ACCTTTAAGAGG,-,0.00),15(CCTTTAAGAGGT,+,0.00)
mm_129309.1	chr15	77596021	77596221	-	1	NA	NA	NA	4	NM_177820	328561	Mm.379486	NM_177820	ENSMUSG00000050014	Apol10b	9130218O11Rik	apolipoprotein L 10B	protein-coding	0.015000	0.497512	
mm_87461.1	chr10	51484910	51485110	+	1	NA	NA	NA	4398	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.005000	0.388060	
mm_41147.1	chr5	87927481	87927681	+	1	NA	NA	NA	1948	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.005000	0.243781	
mm_105232.1	chr11	102316600	102316800	-	1	NA	NA	NA	587	NM_001044383	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.055000	0.636816	
mm_5731.1	chr1	45331916	45332116	-	1	NA	NA	NA	20478	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.045000	0.442786	
mm_17743.1	chr2	32712978	32713178	-	1	NA	NA	NA	-106	NR_039536	100628606		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0.115000	0.791045	
mm_160503.1	chr9	18397438	18397638	-	1	NA	NA	NA	-6880	NM_001033793	546118	Mm.380138	NM_001033793	ENSMUSG00000074502	Ubtfl1	B020006M18Rik|Hmgpi	upstream binding transcription factor, RNA polymerase I-like 1	protein-coding	0.005000	0.432836	
mm_9064.1	chr1	167466918	167467118	-	1	NA	NA	NA	-238	NM_001013382	240899	Mm.159799	NM_001013382	ENSMUSG00000040485	Lrrc52	4930413P14Rik	leucine rich repeat containing 52	protein-coding	0.020000	0.562189	
mm_3716.1	chr1	153909364	153909564	+	1	NA	NA	NA	9535	NM_008131	14645	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.010000	0.457711	-7(TCTTTTATAGTA,+,0.00)
mm_88326.1	chr10	75568535	75568735	+	1	NA	NA	NA	-27	NM_001305992	14598	Mm.4559	NM_008116	ENSMUSG00000006345	Ggt1	CD224|GGT|GGT 1|GGT-1|Ggtp|dwg	gamma-glutamyltransferase 1	protein-coding	0.025000	0.587065	-61(TACCTTTAAAGC,-,0.00),-60(ACCTTTAAAGCC,+,0.00),-59(CCTTTAAAGCCT,+,0.00)
mm_48832.1	chr5	149184184	149184384	-	1	NA	NA	NA	-276	NM_001115153	231915	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	0.105000	0.686567	
mm_85835.1	chr9	110476543	110476743	-	1	NA	NA	NA	51	NM_177771	270201	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0.085000	0.661692	
mm_133944.1	chr16	3908563	3908763	-	1	NA	NA	NA	26	NM_028484	73261	Mm.486226	NM_028484	ENSMUSG00000005983	1700037C18Rik	2810022L20Rik	RIKEN cDNA 1700037C18 gene	protein-coding	0.060000	0.577114	
mm_128884.1	chr15	73147770	73147970	-	1	NA	NA	NA	37077	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.030000	0.487562	
mm_53265.1	chr6	128362699	128362899	+	1	NA	NA	NA	23	NM_001326583	72440	Mm.143908	NM_197981	ENSMUSG00000048668	Rhno1	2510047L19Rik|5930416I19Rik	RAD9-HUS1-RAD1 interacting nuclear orphan 1	protein-coding	0.160000	0.791045	
mm_146529.1	chr18	5273223	5273423	-	1	NA	NA	NA	61116	NM_178722	240186	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.000000	0.378109	
mm_43879.1	chr5	143758228	143758428	+	1	NA	NA	NA	-26	NR_015486	320064	Mm.332820	NR_015486		D130017N08Rik	1700012G11Rik	RIKEN cDNA D130017N08 gene	ncRNA	0.080000	0.646766	
mm_13707.1	chr2	117157481	117157681	+	1	NA	NA	NA	-27546	NR_030440	732489		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.005000	0.318408	-13(GTTTATAGAGGA,+,0.00)
mm_58485.1	chr7	3629911	3630111	+	1	NA	NA	NA	26	NM_027328	68988	Mm.246863	NM_027328	ENSMUSG00000008373	Prpf31	1500019O16Rik|2810404O06Rik|AW554706|PRP31|RP11	pre-mRNA processing factor 31	protein-coding	0.060000	0.487562	
mm_8228.1	chr1	138175146	138175346	-	1	NA	NA	NA	59	NM_011210	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.383085	
mm_54245.1	chr6	28259137	28259337	-	1	NA	NA	NA	2364	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.005000	0.303483	
mm_59550.1	chr7	28071122	28071322	+	1	NA	NA	NA	-14	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.040000	0.592040	
mm_164398.1	chr16	33959740	33959940	+	1	NA	NA	NA	7163	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.005000	0.383085	
mm_77009.1	chr8	107581053	107581253	-	1	NA	NA	NA	7329	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.025000	0.567164	
mm_68028.1	chr7	101011894	101012094	-	1	NA	NA	NA	4	NM_001302347	18442	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0.085000	0.726368	
mm_35743.1	chr4	45408645	45408845	-	1	NA	NA	NA	21	NM_001009949	230125	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0.125000	0.786070	
mm_52790.1	chr6	121263824	121264024	+	1	NA	NA	NA	18018	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.005000	0.482587	77(GGTTATATAAGA,-,0.00)
mm_101081.1	chr11	11725487	11725687	-	1	NA	NA	NA	35410	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.020000	0.452736	
mm_165925.1	chr4	63344289	63344489	-	1	NA	NA	NA	-167	NM_008768	18405	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding	0.015000	0.527363	
mm_131542.1	chr16	17797135	17797335	+	1	NA	NA	NA	-47	NM_153790	224024	Mm.194950	NM_153790	ENSMUSG00000012017	Scarf2	NSR1|SREC-II|SRECRP-1|Scatf1|Srec2|SrecII	scavenger receptor class F, member 2	protein-coding	0.130000	0.791045	
mm_104136.1	chr11	86875877	86876077	-	1	NA	NA	NA	-68317	NM_026191	67487	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.000000	0.402985	
mm_152857.1	chr19	24175250	24175450	-	1	NA	NA	NA	-1210	NM_001198985	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.045000	0.502488	
mm_27936.1	chr3	79572366	79572566	-	1	NA	NA	NA	-4787	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.010000	0.477612	
mm_40410.1	chr5	53061303	53061503	+	1	NA	NA	NA	12050	NM_011402	20531	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	0.035000	0.537313	
mm_85299.1	chr9	100506708	100506908	-	1	NA	NA	NA	48	NM_001324530	17973	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0.005000	0.373134	
mm_1048.1	chr1	58802405	58802605	+	1	NA	NA	NA	3	NM_001080126	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.000000	0.512438	
mm_48375.1	chr5	139484386	139484586	-	1	NA	NA	NA	5	NM_133349	100494	Mm.24521	NM_133349	ENSMUSG00000053581	Zfand2a	AA407930|AU016206|Airap	zinc finger, AN1-type domain 2A	protein-coding	0.070000	0.592040	
mm_143993.1	chr17	87797973	87798173	-	1	NA	NA	NA	-79	NM_199251	210741	Mm.312046	NM_199251	ENSMUSG00000050138	Kcnk12	mntk1	potassium channel, subfamily K, member 12	protein-coding	0.070000	0.641791	
mm_40980.1	chr5	77098768	77098968	+	1	NA	NA	NA	-3601	NM_001159900	74318	Mm.181852	NM_175606	ENSMUSG00000059325	Hopx	1110018K11Rik|1200015P04Rik|2300002F06Rik|AI848177|AW490897|Cameo|Hdop|Hod|Hop|Ob1|Obl|Toto	HOP homeobox	protein-coding	0.010000	0.507463	
mm_153252.1	chr19	36625953	36626153	-	1	NA	NA	NA	63426	NR_033510	668215	Mm.394223	NR_033510	ENSMUSG00000087579	1500017E21Rik	-	RIKEN cDNA 1500017E21 gene	ncRNA	0.005000	0.592040	
mm_85965.1	chr9	112141226	112141426	-	1	NA	NA	NA	-22615	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.015000	0.368159	
mm_92399.1	chr10	76614662	76614862	-	1	NA	NA	NA	8642	NM_146007	12834	Mm.1949	NM_146007	ENSMUSG00000020241	Col6a2	Col6a-2	collagen, type VI, alpha 2	protein-coding	0.050000	0.587065	
mm_52508.1	chr6	115360983	115361183	+	1	NA	NA	NA	-61	NM_001308352	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.155000	0.791045	
mm_134264.1	chr16	13750781	13750981	-	1	NA	NA	NA	-20397	NM_011987	26565	Mm.4214	NM_011987	ENSMUSG00000022683	Pla2g10	GX sPLA2|PLA2GX|sPLA2-X	phospholipase A2, group X	protein-coding	0.065000	0.626866	54(TTCTATAAGAGC,-,0.00)
mm_47167.1	chr5	120743584	120743784	-	1	NA	NA	NA	6164	NM_145227	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.020000	0.477612	
mm_74291.1	chr8	125919046	125919246	+	1	NA	NA	NA	8696	NM_145608	234878	Mm.216458	NM_145608	ENSMUSG00000031853	Map3k21	Mlk4|mKIAA1804	mitogen-activated protein kinase kinase kinase 21	protein-coding	0.030000	0.502488	
mm_59583.1	chr7	28129385	28129585	+	1	NA	NA	NA	19	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.025000	0.537313	
mm_38236.1	chr4	136172503	136172703	-	1	NA	NA	NA	329	NM_177733	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.140000	0.741294	
mm_24861.1	chr3	95893922	95894122	+	1	NA	NA	NA	101	NM_146134	226548	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	0.105000	0.711443	
mm_9289.1	chr1	171634852	171635052	-	1	NA	NA	NA	6948	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.447761	
mm_137953.1	chr17	32965712	32965912	+	1	NA	NA	NA	-19	NM_153063	224691	Mm.328953	NM_153063	ENSMUSG00000053600	Zfp472	KRIM-1|Krim-1A|Krim-1B|Krim1	zinc finger protein 472	protein-coding	0.045000	0.557214	
mm_127360.1	chr15	100674519	100674719	+	1	NA	NA	NA	-5119	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.020000	0.532338	
mm_29482.1	chr3	115713632	115713832	-	1	NA	NA	NA	1323	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.030000	0.492537	
mm_7354.1	chr1	106642115	106642315	-	1	NA	NA	NA	72075	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.015000	0.318408	
mm_48609.1	chr5	144357906	144358106	-	1	NA	NA	NA	83	NR_102374	100579137		NR_102372	ENSMUSG00000104600	Dmrt1i	Dmr	Dmrt1 interacting ncRNA	ncRNA	0.075000	0.631841	
mm_93520.1	chr10	115288049	115288249	-	1	NA	NA	NA	27442	NM_024454	216344	Mm.21936	NM_024454	ENSMUSG00000020132	Rab21	9630024B22	RAB21, member RAS oncogene family	protein-coding	0.005000	0.368159	
mm_40727.1	chr5	65991401	65991601	+	1	NA	NA	NA	12784	NR_027961	231253	Mm.436542	NM_177679	ENSMUSG00000054598	9130230L23Rik	-	RIKEN cDNA 9130230L23 gene	ncRNA	0.005000	0.512438	
mm_68827.1	chr7	126200209	126200409	-	1	NA	NA	NA	99	NM_028816	74204	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|mKIAA0370	exportin 6	protein-coding	0.120000	0.781095	
mm_64423.1	chr7	142576950	142577150	+	1	NA	NA	NA	97	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.030000	0.597015	
mm_96599.1	chr11	69090930	69091130	+	1	NA	NA	NA	2502	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.005000	0.507463	
mm_71044.1	chr8	33673823	33674023	+	1	NA	NA	NA	20685	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.005000	0.472637	
mm_23281.1	chr3	51666022	51666222	+	1	NA	NA	NA	4943	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.030000	0.437811	
mm_69282.1	chr7	128140202	128140402	-	1	NA	NA	NA	10734	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.000000	0.492537	
mm_28681.1	chr3	95339880	95340080	-	1	NA	NA	NA	17222	NM_001163641	84505	Mm.490259	NM_018877	ENSMUSG00000015697	Setdb1	AU022152|ESET|KMT1E|mKIAA0067	SET domain, bifurcated 1	protein-coding	0.020000	0.492537	
mm_47034.1	chr5	115754823	115755023	-	1	NA	NA	NA	-23364	NM_001080808	75665	Mm.233914	NM_001080808	ENSMUSG00000041609	Ccdc64	2210403N09Rik|BICDR-1|Bicdl1	coiled-coil domain containing 64	protein-coding	0.035000	0.522388	
mm_87059.1	chr10	28843889	28844089	+	1	NA	NA	NA	79518	NR_033601	114676	Mm.390292	NR_033601		4930519F09Rik	-	pyruvate dehydrogenase E1 alpha 1 pseudogene	pseudo	0.005000	0.422886	-52(GCATTTATAGGT,+,0.00)
mm_139897.1	chr17	70852661	70852861	+	1	NA	NA	NA	771	NM_001164074	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.045000	0.592040	
mm_101420.1	chr11	29547263	29547463	-	1	NA	NA	NA	-587	NM_028504	73324	Mm.69388	NM_028504	ENSMUSG00000020461	Clhc1	1700034F02Rik	clathrin heavy chain linker domain containing 1	protein-coding	0.050000	0.452736	
mm_117405.1	chr13	73937585	73937785	-	1	NA	NA	NA	82	NM_027182	69716	Mm.275095	NM_027182	ENSMUSG00000021569	Trip13	2410002G23Rik|D13Ertd328e	thyroid hormone receptor interactor 13	protein-coding	0.140000	0.726368	
mm_170722.1	chr2	148978376	148978576	-	1	NA	NA	NA	-102964	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.070000	0.661692	
mm_119594.1	chr14	50952199	50952399	+	1	NA	NA	NA	-3842	NM_001123371	667034	Mm.482171	NM_001123371	ENSMUSG00000068417	Pnp2	-	purine-nucleoside phosphorylase 2	protein-coding	0.015000	0.398010	
mm_53997.1	chr6	7441640	7441840	-	1	NA	NA	NA	-113145	NM_001311060	21333	Mm.1440	NM_009311	ENSMUSG00000061762	Tac1	4930528L02Rik|NK-1|NK1|Nkna|PPT-A|PPTA|SP	tachykinin 1	protein-coding	0.005000	0.452736	-35(TCCTTTATAAAG,-,0.00),-33(CTTTATAAAGCC,+,0.00),-14(CACCATTAAAAG,-,0.00)
mm_12789.1	chr2	79621520	79621720	+	1	NA	NA	NA	-13805	NM_080558	70599	Mm.272881	NM_080558	ENSMUSG00000027007	Ssfa2	5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927	sperm specific antigen 2	protein-coding	0.005000	0.452736	
mm_29174.1	chr3	106516054	106516254	-	1	NA	NA	NA	30114	NM_028110	72121	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.005000	0.452736	
mm_154947.1	chrX	36336608	36336808	+	1	NA	NA	NA	8299	NM_028894	74365	Mm.327654	NM_028894	ENSMUSG00000016239	Lonrf3	4932412G04Rik|5730439E01Rik|A830039N02Rik|AU023707|Rnf127	LON peptidase N-terminal domain and ring finger 3	protein-coding	0.005000	0.343284	
mm_37776.1	chr4	129853131	129853331	-	1	NA	NA	NA	32523	NM_001164745	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.010000	0.497512	
mm_1890.1	chr1	85682315	85682515	+	1	NA	NA	NA	32427	NM_001313714	20684	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.015000	0.412935	
mm_60584.1	chr7	44482616	44482816	+	1	NA	NA	NA	-1801	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.557214	54(CCCTTTCTGGGC,+,0.00)
mm_142030.1	chr17	35235601	35235801	-	1	NA	NA	NA	114	NM_010909	18038	Mm.300795	NM_010909	ENSMUSG00000042419	Nfkbil1	Def-7|IKBL	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor like 1	protein-coding	0.040000	0.582090	
mm_112857.1	chr13	20841942	20842142	+	1	NA	NA	NA	47929	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.378109	
mm_38041.1	chr4	133910633	133910833	-	1	NA	NA	NA	-22936	NM_009097	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.080000	0.666667	
mm_42035.1	chr5	108388339	108388539	+	1	NA	NA	NA	66	NM_008806	18587	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0.015000	0.522388	
mm_110028.1	chr12	16800850	16801050	-	1	NA	NA	NA	-64	NM_015764	268527	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	0.070000	0.666667	
mm_122575.1	chr14	50826787	50826987	-	1	NA	NA	NA	18941	NM_009632	11546	Mm.281482	NM_009632	ENSMUSG00000036023	Parp2	ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2	poly (ADP-ribose) polymerase family, member 2	protein-coding	0.015000	0.472637	-34(TCTTATAAACAG,+,0.00)
mm_25602.1	chr3	116906276	116906476	+	1	NA	NA	NA	44696	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.030000	0.323383	
mm_125638.1	chr15	62079922	62080122	+	1	NA	NA	NA	40765	NR_132746	19296	Mm.4608	NM_011222	ENSMUSG00000097039	Pvt1	Ayu21-84Imeg|Gt(pU21)84Imeg|Mis-1|Mlvi-1|Pvt-1	plasmacytoma variant translocation 1	ncRNA	0.010000	0.338308	
mm_168246.1	chr10	81996904	81997104	+	1	NA	NA	NA	-51119	NM_001319203	408062	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	0.045000	0.606965	
mm_93480.1	chr10	111995458	111995658	-	1	NA	NA	NA	1706	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.030000	0.437811	
mm_24543.1	chr3	93293040	93293240	+	1	NA	NA	NA	-26609	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.010000	0.467662	
mm_52413.1	chr6	113390616	113390816	+	1	NA	NA	NA	1456	NM_001142732	101100	Mm.388573	NM_133923	ENSMUSG00000030276	Ttll3	4833441J24Rik|AI450050	tubulin tyrosine ligase-like family, member 3	protein-coding	0.005000	0.462687	
mm_163008.1	chr11	40364599	40364799	+	1	NA	NA	NA	327983	NM_134017	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.015000	0.328358	
mm_162435.1	chr1	105981016	105981216	+	1	NA	NA	NA	-9290	NM_001122676	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.000000	0.432836	
mm_4029.1	chr1	165769314	165769514	+	1	NA	NA	NA	5634	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.015000	0.383085	
mm_46994.1	chr5	115334389	115334589	-	1	NA	NA	NA	6672	NM_029645	384281	Mm.229308	NM_029645	ENSMUSG00000029536	Gatc	2010003O18Rik	glutamyl-tRNA(Gln) amidotransferase, subunit C	protein-coding	0.005000	0.447761	
mm_34640.1	chr4	150615863	150616063	+	1	NA	NA	NA	36211	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.030000	0.597015	
mm_160827.1	chr11	43149735	43149935	+	1	NA	NA	NA	-42	NM_176999	319767	Mm.252339	NM_176999	ENSMUSG00000055415	Atp10b	5930426O13Rik|9030605H24Rik	ATPase, class V, type 10B	protein-coding	0.000000	0.502488	-35(GGGCTTAAAAAC,-,0.00),-33(GCTTAAAAACCC,+,0.00)
mm_148954.1	chr19	7297616	7297816	+	1	NA	NA	NA	-2269	NM_001080390	13728	Mm.258986	NM_007928	ENSMUSG00000024969	Mark2	EMK-1|Emk|Par-1|Par-1b	MAP/microtubule affinity regulating kinase 2	protein-coding	0.000000	0.427861	
mm_130565.1	chr15	99406567	99406767	-	1	NA	NA	NA	13448	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.030000	0.512438	
mm_108555.1	chr12	84451402	84451602	+	1	NA	NA	NA	-6	NM_173756	217708	Mm.311904	NM_173756	ENSMUSG00000085793	Lin52	5830457H20Rik	lin-52 homolog (C. elegans)	protein-coding	0.065000	0.547264	
mm_169483.1	chr14	73528055	73528255	-	1	NA	NA	NA	18106	NM_026119	67381	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0.015000	0.502488	-28(TTCTATAAAAGT,-,0.00)
mm_19040.1	chr2	76982446	76982646	-	1	NA	NA	NA	1	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.030000	0.557214	
mm_163178.1	chr11	87931848	87932048	+	1	NA	NA	NA	-16945	NM_146412	258407	Mm.271337	NM_146412	ENSMUSG00000060787	Olfr464	MOR240-2	olfactory receptor 464	protein-coding	0.020000	0.432836	
mm_83042.1	chr9	37430790	37430990	-	1	NA	NA	NA	2285	NM_001164767	19649	Mm.212826	NM_011248	ENSMUSG00000032128	Robo3	Rbig1|Rig-1|Rig1|Robo3a|Robo3b	roundabout guidance receptor 3	protein-coding	0.040000	0.557214	-29(ACTCTTAAAAGG,-,0.00)
mm_52967.1	chr6	123138318	123138518	+	1	NA	NA	NA	15102	NM_001170333	26888	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0.030000	0.472637	
mm_128295.1	chr15	37368221	37368421	-	1	NA	NA	NA	-57233	NM_029113	74892	Mm.107630	NM_029113	ENSMUSG00000022288	4930447A16Rik	-	RIKEN cDNA 4930447A16 gene	protein-coding	0.000000	0.477612	-69(GTTTTTAAAGAA,+,0.00),-37(GGCTATTAAAGG,-,0.00)
mm_23477.1	chr3	60481015	60481215	+	1	NA	NA	NA	8285	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.010000	0.492537	
mm_160626.1	chr9	98903202	98903402	+	1	NA	NA	NA	183	NM_001033983	546157	Mm.380145	NM_001033983	ENSMUSG00000074123	7420426K07Rik	-	RIKEN cDNA 7420426K07 gene	protein-coding	0.025000	0.577114	
mm_67521.1	chr7	80929356	80929556	-	1	NA	NA	NA	18094	NM_019951	56529	Mm.43760	NM_019951	ENSMUSG00000025724	Sec11a	1810012E07Rik|18kDa|Sec11l1|Sid2895p|Spc18|sid2895	SEC11 homolog A, signal peptidase complex subunit	protein-coding	0.005000	0.353234	
mm_92362.1	chr10	75939914	75940114	-	1	NA	NA	NA	658	NM_001277132	333670	Mm.291320	NM_001037714	ENSMUSG00000050157	Gm867	Gm736	predicted gene 867	protein-coding	0.030000	0.567164	
mm_56746.1	chr6	115935440	115935640	-	1	NA	NA	NA	3613	NM_145383	212541	Mm.2965	NM_145383	ENSMUSG00000030324	Rho	Noerg1|Opn2|Ops|RP4	rhodopsin	protein-coding	0.020000	0.512438	
mm_127785.1	chr15	3542371	3542571	-	1	NA	NA	NA	39371	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.000000	0.328358	
mm_165363.1	chr2	124610000	124610200	+	1	NA	NA	NA	-196	NM_199238	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.095000	0.621891	
mm_97406.1	chr11	77884587	77884787	+	1	NA	NA	NA	9185	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding	0.025000	0.577114	
mm_167945.1	chrX	134582983	134583183	-	1	NA	NA	NA	57	NM_013482	12229	Mm.4475	NM_013482	ENSMUSG00000031264	Btk	AI528679|xid	Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.015000	0.527363	
mm_109194.1	chr12	108606841	108607041	+	1	NA	NA	NA	1175	NM_001163395	14026	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.005000	0.333333	
mm_126777.1	chr15	86182733	86182933	+	1	NA	NA	NA	3308	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.035000	0.577114	
mm_13121.1	chr2	91664242	91664442	+	1	NA	NA	NA	11134	NM_146124	228359	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	0.000000	0.407960	
mm_154912.1	chrX	21484467	21484667	+	1	NA	NA	NA	-57	NM_007429	11609	Mm.2679	NM_007429	ENSMUSG00000068122	Agtr2	AI316812|AW107640	angiotensin II receptor, type 2	protein-coding	0.015000	0.477612	
mm_145412.1	chr18	57657940	57658140	+	1	NA	NA	NA	-19455	NR_045360	70157	Mm.490532	NR_045360		2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0.005000	0.383085	
mm_28445.1	chr3	90509423	90509623	-	1	NA	NA	NA	-25	NM_001293782	66511	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	0.095000	0.616915	
mm_77618.1	chr8	123925835	123926035	-	1	NA	NA	NA	23330	NM_172288	234865	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	0.015000	0.512438	
mm_83720.1	chr9	50765814	50766014	-	1	NA	NA	NA	19	NM_001311073	68721	Mm.171374	NM_023483	ENSMUSG00000037971	1110032A03Rik	4930500N06Rik|c11orf1	RIKEN cDNA 1110032A03 gene	protein-coding	0.005000	0.452736	
mm_6233.1	chr1	66944884	66945084	-	1	NA	NA	NA	72	NM_021285	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.020000	0.462687	
mm_5318.1	chr1	22783455	22783655	-	1	NA	NA	NA	22169	NM_001012625	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.020000	0.447761	
mm_33413.1	chr4	129906125	129906325	+	1	NA	NA	NA	-1	NR_045190	319894	Mm.59196	NR_045190	ENSMUSG00000086369	E330017L17Rik	-	RIKEN cDNA E330017L17 gene	ncRNA	0.040000	0.567164	
mm_138181.1	chr17	34267407	34267607	+	1	NA	NA	NA	4280	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.030000	0.582090	
mm_71444.1	chr8	46518354	46518554	+	1	NA	NA	NA	27488	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.010000	0.398010	
mm_133241.1	chr16	77077088	77077288	+	1	NA	NA	NA	63119	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.045000	0.512438	
mm_33803.1	chr4	134930824	134931024	+	1	NA	NA	NA	-56	NM_026780	68592	Mm.29989	NM_026780	ENSMUSG00000028821	Syf2	1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|Ntc31|mp29|p29	SYF2 homolog, RNA splicing factor (S. cerevisiae)	protein-coding	0.085000	0.611940	
mm_163120.1	chr11	75650391	75650591	+	1	NA	NA	NA	-1018	NM_008659	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.005000	0.616915	
mm_98489.1	chr11	94951369	94951569	+	1	NA	NA	NA	15245	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.025000	0.527363	
mm_81172.1	chr9	107299944	107300144	+	1	NA	NA	NA	3385	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.030000	0.616915	
mm_99513.1	chr11	103104662	103104862	+	1	NA	NA	NA	3074	NM_025988	67131	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	0.020000	0.557214	
mm_124366.1	chr14	105859086	105859286	-	1	NA	NA	NA	37633	NM_011897	24064	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty homolog 2 (Drosophila)	protein-coding	0.020000	0.437811	
mm_23419.1	chr3	58576585	58576785	+	1	NA	NA	NA	27	NM_001040396	69227	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	0.105000	0.676617	
mm_96503.1	chr11	68442530	68442730	+	1	NA	NA	NA	10505	NM_177320	320207	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik	phosphoinositide-3-kinase, regulatory subunit 5, p101	protein-coding	0.025000	0.477612	-2(TGGCTTTAAAGG,-,0.00),-1(GGCTTTAAAGGA,-,0.00),0(GCTTTAAAGGAC,+,0.00)
mm_162014.1	chr19	44757236	44757436	+	1	NA	NA	NA	-58	NM_011037	18504	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0.100000	0.681592	
mm_33609.1	chr4	132581397	132581597	+	1	NA	NA	NA	17430	NM_001081211	19204	Mm.89389	NM_001081211	ENSMUSG00000056529	Ptafr	PAFR	platelet-activating factor receptor	protein-coding	0.015000	0.398010	
mm_3170.1	chr1	135686981	135687181	+	1	NA	NA	NA	-42116	NM_007791	13007	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.020000	0.527363	14(CCCTTTATGCCA,+,0.00)
mm_106883.1	chr12	8011832	8012032	+	1	NA	NA	NA	34255	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.000000	0.378109	
mm_28443.1	chr3	90508629	90508829	-	1	NA	NA	NA	769	NM_001293776	66511	Mm.154136	NM_023215	ENSMUSG00000001017	Chtop	2500003M10Rik|Fop|Srag	chromatin target of PRMT1	protein-coding	0.045000	0.398010	
mm_14838.1	chr2	147373814	147374014	+	1	NA	NA	NA	8920	NM_008780	18503	Mm.315502	NM_008780	ENSMUSG00000037034	Pax1	Pax-1|hbs|hunchback|un|undulated|wt	paired box 1	protein-coding	0.050000	0.577114	
mm_56142.1	chr6	87807458	87807658	-	1	NA	NA	NA	2199	NM_133717	69834	Mm.37380	NM_133717	ENSMUSG00000030055	Rab43	1810048P08Rik|2500004H21Rik|AW490415	RAB43, member RAS oncogene family	protein-coding	0.005000	0.457711	
mm_149565.1	chr19	12798482	12798682	+	1	NA	NA	NA	-27	NM_134152	107321	Mm.313136	NM_134152	ENSMUSG00000024696	Lpxn	4933402K05Rik|A530083L21Rik|AV278559|LDPL	leupaxin	protein-coding	0.020000	0.447761	
mm_115627.1	chr13	12106587	12106787	-	1	NA	NA	NA	258	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.140000	0.815920	
mm_65750.1	chr7	28560949	28561149	-	1	NA	NA	NA	-65	NR_106016	102466795		NR_106016	ENSMUSG00000098558	Mir7049	Gm27277|mmu-mir-7049	microRNA 7049	ncRNA	0.020000	0.587065	
mm_606.1	chr1	39903922	39904122	+	1	NA	NA	NA	3109	NM_008696	26921	Mm.491139	NM_008696	ENSMUSG00000026074	Map4k4	9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik	mitogen-activated protein kinase kinase kinase kinase 4	protein-coding	0.010000	0.378109	-48(CCTTTTAAACAC,+,0.00)
mm_164096.1	chr15	11762817	11763017	+	1	NA	NA	NA	142757	NM_008728	18162	Mm.25259	NM_008728	ENSMUSG00000022206	Npr3	ANP-C|ANPR-C|EF-2|NPR-C|lgj|stri	natriuretic peptide receptor 3	protein-coding	0.015000	0.487562	-19(GGCTTTTTAGGC,-,0.00)
mm_121399.1	chr14	119155938	119156138	+	1	NA	NA	NA	17773	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.015000	0.447761	
mm_126676.1	chr15	84669487	84669687	+	1	NA	NA	NA	6381	NM_001346662	109270	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0.020000	0.606965	
mm_32533.1	chr4	109000737	109000937	+	1	NA	NA	NA	32	NM_146150	230598	Mm.274950	NM_146150	ENSMUSG00000053510	Nrd1	2600011I06Rik|AI875733|NRD-C|Nrdc	nardilysin, N-arginine dibasic convertase, NRD convertase 1	protein-coding	0.080000	0.671642	
mm_83017.1	chr9	36785889	36786089	-	1	NA	NA	NA	11079	NM_007915	13663	Mm.4337	NM_007915	ENSMUSG00000062762	Ei24	AA536736|AI115355|PIG8	etoposide induced 2.4 mRNA	protein-coding	0.000000	0.427861	
mm_87679.1	chr10	59221853	59222053	+	1	NA	NA	NA	31	NM_172939	268301	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.095000	0.691542	
mm_95917.1	chr11	58220596	58220796	+	1	NA	NA	NA	5719	NM_019440	54396	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	0.010000	0.502488	
mm_38829.1	chr4	149137466	149137666	-	1	NA	NA	NA	34	NM_027263	69928	Mm.260893	NM_027263	ENSMUSG00000073705	Apitd1	2610040C18Rik|2810407L01Rik|CENP-S	apoptosis-inducing, TAF9-like domain 1	protein-coding	0.125000	0.681592	
mm_119227.1	chr14	33250446	33250646	+	1	NA	NA	NA	33723	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.030000	0.512438	-68(GCTTTAATGGTC,+,0.00)
mm_103664.1	chr11	79059702	79059902	-	1	NA	NA	NA	36205	NR_045873	790910	Mm.440410	NR_045873		Gm11201	ENSMUSG00000072637|OTTMUSG00000000169	predicted gene 11201	ncRNA	0.020000	0.572139	
mm_25869.1	chr3	129901379	129901579	+	1	NA	NA	NA	64	NM_009811	12368	Mm.281379	NM_009811	ENSMUSG00000027997	Casp6	CASP-6|Mch2	caspase 6	protein-coding	0.080000	0.726368	
mm_69901.1	chr7	141638949	141639149	-	1	NA	NA	NA	16270	NM_001330001	353328	Mm.246621	NM_181729	ENSMUSG00000048191	Muc6	-	mucin 6, gastric	protein-coding	0.000000	0.522388	
mm_61591.1	chr7	80025211	80025411	+	1	NA	NA	NA	497	NM_001146000	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.080000	0.741294	
mm_128109.1	chr15	28025757	28025957	-	1	NA	NA	NA	-9	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.105000	0.661692	
mm_35087.1	chr4	7911937	7912137	-	1	NA	NA	NA	327004	NM_007592	12319	Mm.119320	NM_007592	ENSMUSG00000041261	Car8	AW546993|Ca8|Cals|Cals1|Carp|wdl	carbonic anhydrase 8	protein-coding	0.005000	0.388060	
mm_69584.1	chr7	135704551	135704751	-	1	NA	NA	NA	11728	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.030000	0.507463	
mm_58149.1	chr6	142322893	142323093	-	1	NA	NA	NA	-12	NM_130861	108096	Mm.206599	NM_130861	ENSMUSG00000063975	Slco1a5	Oatp-3|Oatp3|Slc21a7	solute carrier organic anion transporter family, member 1a5	protein-coding	0.020000	0.467662	
mm_161892.1	chr18	42300258	42300458	+	1	NA	NA	NA	25005	NM_172626	225432	Mm.329400	NM_172626	ENSMUSG00000024491	Rbm27	A730010I06|AI043120|Psc1|mKIAA1311	RNA binding motif protein 27	protein-coding	0.010000	0.467662	
mm_77449.1	chr8	121805232	121805432	-	1	NA	NA	NA	24237	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.010000	0.477612	
mm_65669.1	chr7	28291023	28291223	-	1	NA	NA	NA	11	NM_175033	280621	Mm.212777	NM_175033	ENSMUSG00000046750	Selenov	Selv	selenoprotein V	protein-coding	0.080000	0.631841	
mm_147390.1	chr18	44174950	44175150	-	1	NA	NA	NA	23	NM_183123	77424	Mm.99224	NM_183123	ENSMUSG00000053729	Spinkl	9530002K18Rik	serine protease inhibitor, Kazal type-like	protein-coding	0.005000	0.378109	-72(ACATTTATAAGG,-,0.00)
mm_43351.1	chr5	135168430	135168630	+	1	NA	NA	NA	158	NM_009745	12054	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	0.125000	0.676617	
mm_74154.1	chr8	123381396	123381596	+	1	NA	NA	NA	7785	NM_001286363	66855	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0.020000	0.507463	
mm_115234.1	chr13	109903274	109903474	+	1	NA	NA	NA	-435	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.085000	0.696517	
mm_105106.1	chr11	100969639	100969839	-	1	NA	NA	NA	878	NM_008986	19285	Mm.21864	NM_008986	ENSMUSG00000004044	Ptrf	2310075E07Rik|AW546441|Cav-p60|Cavin	polymerase I and transcript release factor	protein-coding	0.040000	0.567164	
mm_699.1	chr1	40600831	40601031	+	1	NA	NA	NA	20704	NM_177084	110895	Mm.108602	NM_177084	ENSMUSG00000026065	Slc9a4	AW990558|D730009J23Rik|NHE4	solute carrier family 9 (sodium/hydrogen exchanger), member 4	protein-coding	0.055000	0.482587	
mm_31901.1	chr4	83597183	83597383	+	1	NA	NA	NA	71738	NM_001081012	320226	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	0.030000	0.562189	
mm_44302.1	chr5	8996545	8996745	-	1	NA	NA	NA	501	NM_023733	74114	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.020000	0.487562	
mm_77496.1	chr8	122596002	122596202	-	1	NA	NA	NA	15385	NM_001193645	50917	Mm.1786	NM_016722	ENSMUSG00000015027	Galns	mFLJ00319	galactosamine (N-acetyl)-6-sulfate sulfatase	protein-coding	0.010000	0.552239	
mm_130916.1	chr15	102625368	102625568	-	1	NA	NA	NA	-4	NM_001310066	223922	Mm.208714	NM_146065	ENSMUSG00000052414	Atf7	1110012F10Rik|9430065F09Rik|AI549878|C130020M04Rik	activating transcription factor 7	protein-coding	0.095000	0.686567	
mm_142682.1	chr17	47732966	47733166	-	1	NA	NA	NA	-3971	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.005000	0.542289	
mm_116391.1	chr13	41194698	41194898	-	1	NA	NA	NA	25364	NM_001311121	54326	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0.030000	0.517413	
mm_85086.1	chr9	91368063	91368263	-	1	NA	NA	NA	-809	NM_009576	22774	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.000000	0.512438	
mm_22979.1	chr3	32817522	32817722	+	1	NA	NA	NA	-4	NM_001013024	72607	Mm.316153	NM_001013024	ENSMUSG00000056900	Usp13	2700071E21Rik|AI848077|ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding	0.135000	0.731343	
mm_34492.1	chr4	148591849	148592049	+	1	NA	NA	NA	436	NM_009272	20810	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	0.075000	0.686567	
mm_155758.1	chrX	96167634	96167834	+	1	NA	NA	NA	71689	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.000000	0.482587	
mm_80517.1	chr9	80066861	80067061	+	1	NA	NA	NA	58	NM_146003	215351	Mm.28232	NM_146003	ENSMUSG00000034252	Senp6	2810017C20Rik|E130319N12Rik|Susp1|mKIAA0797	SUMO/sentrin specific peptidase 6	protein-coding	0.150000	0.815920	
mm_60496.1	chr7	44478754	44478954	+	1	NA	NA	NA	-5663	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.402985	
mm_104391.1	chr11	94486129	94486329	-	1	NA	NA	NA	-919	NM_144827	217116	Mm.156123	NM_144827	ENSMUSG00000020867	Spata20	Tisp78	spermatogenesis associated 20	protein-coding	0.075000	0.587065	
mm_165355.1	chr2	121405047	121405247	+	1	NA	NA	NA	8645	NM_153075	212670	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	0.020000	0.412935	
mm_64198.1	chr7	141468263	141468463	+	1	NA	NA	NA	-426	NM_001111050	12476	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0.010000	0.552239	
mm_166140.1	chr4	156245362	156245562	+	1	NA	NA	NA	9452	NM_021303	57741	Mm.423051	NM_021303	ENSMUSG00000095567	Noc2l	AA410003|AF155546|NIR	NOC2 like nucleolar associated transcriptional repressor	protein-coding	0.025000	0.517413	
mm_171644.1	chr4	32964735	32964935	+	1	NA	NA	NA	-14009	NM_001012451	140577	Mm.214766	NM_080471	ENSMUSG00000040183	Ankrd6	-	ankyrin repeat domain 6	protein-coding	0.065000	0.557214	
mm_74835.1	chr8	23208310	23208510	-	1	NA	NA	NA	43	NM_018743	102247	Mm.200898	NM_018743	ENSMUSG00000031545	Gpat4	AU041707|AW545732|Agpat6|Tsarg7	glycerol-3-phosphate acyltransferase 4	protein-coding	0.130000	0.746269	
mm_148847.1	chr19	6376448	6376648	+	1	NA	NA	NA	-7860	NM_011224	19309	Mm.27806	NM_011224	ENSMUSG00000032648	Pygm	AI115133|PG	muscle glycogen phosphorylase	protein-coding	0.010000	0.432836	
mm_17853.1	chr2	34755141	34755341	-	1	NA	NA	NA	-9	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.010000	0.457711	
mm_126284.1	chr15	79229051	79229251	+	1	NA	NA	NA	-22	NM_008837	18693	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	0.050000	0.601990	
mm_19895.1	chr2	114051965	114052165	-	1	NA	NA	NA	810	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.030000	0.567164	-56(CCCTCTAAAGGA,-,0.00)
mm_131088.1	chr16	4886043	4886243	+	1	NA	NA	NA	43	NM_001252437	17237	Mm.291326	NM_029657	ENSMUSG00000022517	Mgrn1	2610042J20Rik|mKIAA0544|md|nc	mahogunin, ring finger 1	protein-coding	0.080000	0.711443	
mm_113034.1	chr13	23533776	23533976	+	1	NA	NA	NA	-35	NM_175661	319173	Mm.377878	NM_175661	ENSMUSG00000061991	Hist1h2af	H2a-221	histone cluster 1, H2af	protein-coding	0.055000	0.532338	
mm_173192.1	chrX	62072445	62072645	-	1	NA	NA	NA	-210954	NM_001199997	74437	Mm.85792	NM_001199996	ENSMUSG00000045330	4933402E13Rik	-	RIKEN cDNA 4933402E13 gene	protein-coding	0.020000	0.547264	
mm_5917.1	chr1	55087755	55087955	-	1	NA	NA	NA	77	NM_010477	15510	Mm.1777	NM_010477	ENSMUSG00000025980	Hspd1	60kDa|Hsp60	heat shock protein 1 (chaperonin)	protein-coding	0.150000	0.796020	
mm_169638.1	chr15	47548516	47548716	+	1	NA	NA	NA	925311	NR_045811	75281	Mm.159487	NR_045811	ENSMUSG00000051198	4930548G14Rik	-	RIKEN cDNA 4930548G14 gene	ncRNA	0.075000	0.661692	
mm_13033.1	chr2	91054123	91054323	+	1	NA	NA	NA	207	NM_008948	19182	Mm.289832	NM_008948	ENSMUSG00000002102	Psmc3	TBP-1	proteasome (prosome, macropain) 26S subunit, ATPase 3	protein-coding	0.085000	0.606965	
mm_75305.1	chr8	41133557	41133757	-	1	NA	NA	NA	69	NM_001005863	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.095000	0.736318	
mm_50643.1	chr6	51432729	51432929	+	1	NA	NA	NA	159	NM_010903	18025	Mm.42138	NM_010903	ENSMUSG00000029832	Nfe2l3	Nrf3	nuclear factor, erythroid derived 2, like 3	protein-coding	0.070000	0.686567	
mm_28320.1	chr3	89322815	89323015	-	1	NA	NA	NA	-36	NM_010108	13638	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0.125000	0.771144	
mm_37160.1	chr4	117133861	117134061	-	1	NA	NA	NA	2	NM_013807	12795	Mm.259022	NM_013807	ENSMUSG00000028680	Plk3	Cnk|Fnk|PLK-3|PRK	polo-like kinase 3	protein-coding	0.125000	0.691542	
mm_3162.1	chr1	135232448	135232648	+	1	NA	NA	NA	25924	NM_001163131	13710	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0.020000	0.388060	
mm_148025.1	chr18	68704322	68704522	-	1	NA	NA	NA	-34978	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0.015000	0.417910	
mm_92031.1	chr10	62477826	62478026	-	1	NA	NA	NA	8672	NM_001113355	30930	Mm.260703	NM_133672	ENSMUSG00000020078	Vps26a	AA407240|HB58|Vps26	VPS26 retromer complex component A	protein-coding	0.005000	0.313433	
mm_39113.1	chr4	154928458	154928658	-	1	NA	NA	NA	-481	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.025000	0.507463	89(GCTTAAAGGGGG,+,0.00)
mm_86267.1	chr9	121705431	121705631	-	1	NA	NA	NA	-502	NM_178677	215474	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.030000	0.522388	
mm_16007.1	chr2	167375248	167375448	+	1	NA	NA	NA	-26170	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.020000	0.502488	
mm_43627.1	chr5	138172065	138172265	+	1	NA	NA	NA	144	NM_021392	11781	Mm.113205	NM_021392	ENSMUSG00000019518	Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding	0.065000	0.542289	
mm_84778.1	chr9	75683919	75684119	-	1	NA	NA	NA	37	NM_001164790	20255	Mm.2386	NM_009130	ENSMUSG00000032181	Scg3	1B1075|AI385542|Chgd|SgIII	secretogranin III	protein-coding	0.095000	0.661692	
mm_130802.1	chr15	101707487	101707687	-	1	NA	NA	NA	5304	NM_027011	110308	Mm.451847	NM_027011	ENSMUSG00000061527	Krt5	3300001P10Rik|AW146334|CK5|K5|Krt2-5|Tfip8	keratin 5	protein-coding	0.030000	0.646766	
mm_56078.1	chr6	87228606	87228806	-	1	NA	NA	NA	107069	NM_054041	69538	Mm.232525	NM_054041	ENSMUSG00000033420	Antxr1	2310008J16Rik|2810405N18Rik|Antrx1|Tem8	anthrax toxin receptor 1	protein-coding	0.010000	0.467662	
mm_80667.1	chr9	90162923	90163123	+	1	NA	NA	NA	45	NM_001311115	108153	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.065000	0.626866	
mm_71909.1	chr8	70083372	70083572	+	1	NA	NA	NA	-57	NM_177900	330790	Mm.152048	NM_177900	ENSMUSG00000007594	Hapln4	9330174O11|Bral2|Lpr4	hyaluronan and proteoglycan link protein 4	protein-coding	0.105000	0.706468	-45(CACCTTTAAAGC,-,0.00),-44(ACCTTTAAAGCG,+,0.00),-43(CCTTTAAAGCGC,+,0.00)
mm_133934.1	chr16	3872201	3872401	-	1	NA	NA	NA	73	NM_001033159	71063	Mm.379190	NM_001033159	ENSMUSG00000039789	Zfp597	4933407K12Rik|AI462383|AI666357	zinc finger protein 597	protein-coding	0.075000	0.626866	
mm_124447.1	chr14	118917421	118917621	-	1	NA	NA	NA	5646	NR_130725	66573	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	0.010000	0.477612	
mm_150570.1	chr19	40113356	40113556	+	1	NA	NA	NA	23777	NM_001167875	107141	Mm.474575	NM_134144	ENSMUSG00000054827	Cyp2c50	AI266900	cytochrome P450, family 2, subfamily c, polypeptide 50	protein-coding	0.010000	0.417910	
mm_78493.1	chr9	32716660	32716860	+	1	NA	NA	NA	20718	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.010000	0.363184	
mm_147449.1	chr18	46557823	46558023	-	1	NA	NA	NA	16610	NM_173394	225471	Mm.149280	NM_173394	ENSMUSG00000056130	Ticam2	B430113A10|TICAM-2|TRAM|Tirp|Trif	toll-like receptor adaptor molecule 2	protein-coding	0.020000	0.412935	
mm_1951.1	chr1	86356493	86356693	+	1	NA	NA	NA	-266	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.010000	0.437811	-61(TACTTTAAAAGT,-,0.00)
mm_170839.1	chr2	177272241	177272441	-	1	NA	NA	NA	-192401	NM_001177568	628308	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420|OTTMUSG00000016588	zinc finger protein 970	protein-coding	0.010000	0.457711	
mm_170286.1	chr18	29195553	29195753	+	1	NA	NA	NA	-246547	NR_045395	78199	Mm.243850	NR_045395		4930527G23Rik	-	RIKEN cDNA 4930527G23 gene	ncRNA	0.040000	0.626866	
mm_149199.1	chr19	9975087	9975287	+	1	NA	NA	NA	-5413	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.005000	0.572139	
mm_23580.1	chr3	63382861	63383061	+	1	NA	NA	NA	86866	NM_001289463	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.000000	0.457711	
mm_157388.1	chrX	38252356	38252556	-	1	NA	NA	NA	25	NM_001289727	245386	Mm.72979	NM_172930	ENSMUSG00000036502	Tmem255a	4933417N17|6430550H21Rik|Fam70a	transmembrane protein 255A	protein-coding	0.055000	0.671642	
mm_108265.1	chr12	78723442	78723642	+	1	NA	NA	NA	-25405	NM_019579	56217	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	0.005000	0.318408	
mm_29090.1	chr3	104638336	104638536	-	1	NA	NA	NA	-228	NM_009196	20501	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.140000	0.731343	
mm_868.1	chr1	52152197	52152397	+	1	NA	NA	NA	32675	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.040000	0.552239	-78(TCTTTAATACCC,+,0.00)
mm_11283.1	chr2	30066409	30066609	+	1	NA	NA	NA	35	NM_001204875	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.120000	0.766169	
mm_171827.1	chr5	14401568	14401768	-	1	NA	NA	NA	-113250	NM_011995	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.065000	0.656716	
mm_60063.1	chr7	31208280	31208480	+	1	NA	NA	NA	46022	NR_046062	100038516	Mm.387223	NR_046062	ENSMUSG00000100985	Gm10640	EG668322|ENSMUSG00000074193	predicted gene 10640	ncRNA	0.060000	0.572139	
mm_139199.1	chr17	47657912	47658112	+	1	NA	NA	NA	27322	NM_198421	224836	Mm.59393	NM_198421	ENSMUSG00000090115	Usp49	C330046L10Rik|Gm545	ubiquitin specific peptidase 49	protein-coding	0.010000	0.417910	
mm_106343.1	chr11	118393204	118393404	-	1	NA	NA	NA	8627	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.015000	0.537313	
mm_44027.1	chr5	147430196	147430396	+	1	NA	NA	NA	-284	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.140000	0.686567	-33(GAGTTTAAAAAC,-,0.00)
mm_72523.1	chr8	83976772	83976972	+	1	NA	NA	NA	-11	NM_001277898	18747	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0.005000	0.542289	
mm_153130.1	chr19	34192501	34192701	-	1	NA	NA	NA	331	NM_029682	76630	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.115000	0.711443	
mm_58670.1	chr7	7277895	7278095	+	1	NA	NA	NA	294	NR_003555	76229	Mm.387947	NM_001113468	ENSMUSG00000095730	Vmn2r29	6430701C03Rik	vomeronasal 2, receptor 29	protein-coding	0.050000	0.616915	
mm_65402.1	chr7	25206433	25206633	-	1	NA	NA	NA	11192	NR_106015	102466794		NR_106015	ENSMUSG00000098325	Mir7048	Gm27274|mmu-mir-7048	microRNA 7048	ncRNA	0.015000	0.557214	
mm_54796.1	chr6	41680713	41680913	-	1	NA	NA	NA	-90	NM_001007572	194352	Mm.135734	NM_001007572	ENSMUSG00000036899	Trpv5	CAT2|D630033B11|ECAC1	transient receptor potential cation channel, subfamily V, member 5	protein-coding	0.005000	0.487562	
mm_173199.1	chrX	65784529	65784729	-	1	NA	NA	NA	736985	NM_027302	70062	Mm.45791	NM_027302	ENSMUSG00000031181	Ctag2	1700030B21Rik	cancer/testis antigen 2	protein-coding	0.030000	0.492537	-36(CCCTTTAAATAC,+,0.00),-36(CCCTTTAAATAC,-,0.00),-34(CTTTAAATACCC,+,0.00)
mm_80102.1	chr9	70321290	70321490	+	1	NA	NA	NA	84363	NR_049200	100885839		NR_049200	ENSMUSG00000093763	Mir5626	Gm25590|mir-5626|mmu-mir-5626	microRNA 5626	ncRNA	0.010000	0.402985	
mm_64414.1	chr7	142533460	142533660	+	1	NA	NA	NA	443	NM_011288	19935	Mm.12144	NM_011288	ENSMUSG00000037772	Mrpl23	L23mrp|Rpl23|Rpl23l	mitochondrial ribosomal protein L23	protein-coding	0.025000	0.547264	
mm_15039.1	chr2	152802361	152802561	+	1	NA	NA	NA	28256	NM_001289716	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.035000	0.402985	
mm_8087.1	chr1	135660171	135660371	-	1	NA	NA	NA	-68926	NM_007791	13007	Mm.196484	NM_007791	ENSMUSG00000026421	Csrp1	AA408841|AA959891|AW545626|CRP1|Csrp	cysteine and glycine-rich protein 1	protein-coding	0.010000	0.552239	
mm_16457.1	chr2	180582664	180582864	+	1	NA	NA	NA	1460	NM_028479	73247	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	0.150000	0.746269	
mm_836.1	chr1	51566441	51566641	+	1	NA	NA	NA	-88142	NM_001310549	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.025000	0.452736	
mm_120396.1	chr14	64652471	64652671	+	1	NA	NA	NA	40	NM_001081177	16554	Mm.23611	NM_001081177	ENSMUSG00000060012	Kif13b	5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN	kinesin family member 13B	protein-coding	0.105000	0.681592	
mm_69744.1	chr7	140955054	140955254	-	1	NA	NA	NA	807	NM_030694	80876	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.010000	0.542289	
mm_19409.1	chr2	91695921	91696121	-	1	NA	NA	NA	14571	NM_145528	51897	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	0.015000	0.462687	-32(GTTTTTAAACAG,+,0.00)
mm_32053.1	chr4	97772368	97772568	+	1	NA	NA	NA	-5158	NM_001122953	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.040000	0.502488	
mm_128388.1	chr15	43148679	43148879	-	1	NA	NA	NA	22039	NM_172815	239405	Mm.193274	NM_172815	ENSMUSG00000051920	Rspo2	2610028F08Rik|AA673245|D430027K22|ftls	R-spondin 2	protein-coding	0.020000	0.407960	
mm_7003.1	chr1	86442446	86442646	-	1	NA	NA	NA	16217	NM_027966	71863	Mm.179627	NM_027966	ENSMUSG00000036574	1700019O17Rik	-	RIKEN cDNA 1700019O17 gene	protein-coding	0.130000	0.706468	
mm_14963.1	chr2	152081282	152081482	+	1	NA	NA	NA	-147	NM_001160410	545474	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.015000	0.492537	
mm_41682.1	chr5	100077806	100078006	+	1	NA	NA	NA	-56	NR_045993	76003	Mm.447060	NR_045993	ENSMUSG00000086259	Tmem150cos	5830403M04Rik	transmembrane protein 150C, opposite strand	ncRNA	0.035000	0.497512	
mm_123213.1	chr14	59418984	59419184	-	1	NA	NA	NA	21796	NM_001320725	107303348		NM_001320725		Setdb2-phf11c	-	Setdb2-Phf11c readthrough	protein-coding	0.020000	0.373134	
mm_93218.1	chr10	95145306	95145506	-	1	NA	NA	NA	419	NR_131146	628062		NR_131146		Gm29684	-	predicted gene, 29684	ncRNA	0.015000	0.467662	
mm_15089.1	chr2	153241453	153241653	+	1	NA	NA	NA	21	NM_080463	140484	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	0.120000	0.761194	
mm_28063.1	chr3	84259614	84259814	-	1	NA	NA	NA	65	NM_001271727	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.080000	0.597015	
mm_103361.1	chr11	74925587	74925787	-	1	NA	NA	NA	111	NM_013761	27364	Mm.131443	NM_013761	ENSMUSG00000001323	Srr	M100034|Rgsc34|Srs	serine racemase	protein-coding	0.120000	0.671642	
mm_17323.1	chr2	26476075	26476275	-	1	NA	NA	NA	-6056	NR_105962	102465602		NR_105962	ENSMUSG00000098548	Mir6996	Gm27531|mmu-mir-6996	microRNA 6996	ncRNA	0.010000	0.522388	
mm_123231.1	chr14	60086802	60087002	-	1	NA	NA	NA	-68	NM_015803	50769	Mm.319599	NM_015803	ENSMUSG00000021983	Atp8a2	AI415030|Atpc1b|agil|wl	ATPase, aminophospholipid transporter-like, class I, type 8A, member 2	protein-coding	0.070000	0.696517	
mm_167439.1	chr8	120112836	120113036	+	1	NA	NA	NA	-1216	NM_001163762	234797	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.005000	0.492537	-97(GCCTATTAGAAG,-,0.00)
mm_47949.1	chr5	135465828	135466028	-	1	NA	NA	NA	-71382	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.020000	0.567164	
mm_104758.1	chr11	98473705	98473905	-	1	NA	NA	NA	26971	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.010000	0.422886	
mm_23298.1	chr3	52270103	52270303	+	1	NA	NA	NA	1866	NM_019739	56458	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.025000	0.577114	-32(AACCTTTAAAGG,-,0.00),-31(ACCTTTAAAGGG,+,0.00),-31(ACCTTTAAAGGG,-,0.00),-30(CCTTTAAAGGGC,+,0.00),-29(CTTTAAAGGGCC,+,0.00)
mm_161312.1	chr14	43015476	43015676	-	1	NA	NA	NA	0	NM_001244671	100042055	Mm.429109	NM_001244671	ENSMUSG00000095226	Gm10377	ENSMUSG00000072606	predicted gene 10377	protein-coding	0.000000	0.452736	
mm_133567.1	chr16	91405733	91405933	+	1	NA	NA	NA	-402	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.025000	0.492537	
mm_40695.1	chr5	65791018	65791218	+	1	NA	NA	NA	27597	NM_001024917	333789	Mm.332398	NM_001024917	ENSMUSG00000037795	N4bp2	B3bp|E430014I16|Gm1791|Gm868	NEDD4 binding protein 2	protein-coding	0.030000	0.542289	
mm_163781.1	chr13	120172309	120172509	+	1	NA	NA	NA	32163	NM_001039648	639910	Mm.424428	NM_001039648	ENSMUSG00000096323	Gm20767	-	predicted gene, 20767	protein-coding	0.010000	0.477612	-34(GCCTATATAAGA,-,0.00)
mm_103135.1	chr11	70237769	70237969	-	1	NA	NA	NA	45	NM_001177601	104457	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	0.110000	0.711443	
mm_97684.1	chr11	80089301	80089501	+	1	NA	NA	NA	1	NM_001029856	237877	Mm.89551	NM_001029856	ENSMUSG00000017550	Atad5	C130052G03Rik|FRAG1|Gm17	ATPase family, AAA domain containing 5	protein-coding	0.110000	0.597015	
mm_138765.1	chr17	37054700	37054900	+	1	NA	NA	NA	8834	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.045000	0.542289	
mm_36729.1	chr4	99120817	99121017	-	1	NA	NA	NA	-2	NM_026082	67299	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0.160000	0.771144	
mm_24671.1	chr3	94699492	94699692	+	1	NA	NA	NA	6019	NM_019414	20342	Mm.225405	NM_019414	ENSMUSG00000068877	Selenbp2	AP56|Lpsb2	selenium binding protein 2	protein-coding	0.015000	0.542289	
mm_61836.1	chr7	88283807	88284007	+	1	NA	NA	NA	5822	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.000000	0.358209	
mm_155881.1	chrX	101479195	101479395	+	1	NA	NA	NA	30186	NM_013712	26549	Mm.46232	NM_013712	ENSMUSG00000031312	Itgb1bp2	Chordc3	integrin beta 1 binding protein 2	protein-coding	0.025000	0.472637	
mm_122819.1	chr14	54641233	54641433	-	1	NA	NA	NA	31	NM_199470	239096	Mm.386871	NM_199470	ENSMUSG00000059674	Cdh24	1700040A22Rik|ENSMUSG00000022188	cadherin-like 24	protein-coding	0.135000	0.776119	
mm_147437.1	chr18	46522030	46522230	-	1	NA	NA	NA	3841	NM_173423	240263	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.000000	0.248756	-64(GGCCTTATAAAA,-,0.00)
mm_27155.1	chr3	33082965	33083165	-	1	NA	NA	NA	-5	NM_001289505	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.000000	0.532338	
mm_143394.1	chr17	70679805	70680005	-	1	NA	NA	NA	118158	NM_001128181	224997	Mm.311840	NM_027712	ENSMUSG00000003279	Dlgap1	4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162	discs, large (Drosophila) homolog-associated protein 1	protein-coding	0.020000	0.507463	
mm_12755.1	chr2	79255325	79255525	+	1	NA	NA	NA	-1	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.050000	0.681592	
mm_7416.1	chr1	119504525	119504725	-	1	NA	NA	NA	157	NM_022327	64143	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0.095000	0.701493	
mm_59003.1	chr7	19181082	19181282	+	1	NA	NA	NA	12	NM_028153	72205	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0.090000	0.726368	
mm_140119.1	chr17	78937116	78937316	+	1	NA	NA	NA	81	NM_028611	73694	Mm.104959	NM_028611	ENSMUSG00000024082	Ndufaf7	2410091C18Rik|AL033374|PRO1853	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 7	protein-coding	0.070000	0.636816	
mm_107847.1	chr12	69372042	69372242	+	1	NA	NA	NA	-8	NM_007481	11845	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.125000	0.716418	
mm_142727.1	chr17	48234645	48234845	-	1	NA	NA	NA	2006	NM_021406	58217	Mm.248352	NM_021406	ENSMUSG00000042265	Trem1	-	triggering receptor expressed on myeloid cells 1	protein-coding	0.020000	0.462687	
mm_109603.1	chr12	112679495	112679695	+	1	NA	NA	NA	755	NM_001100460	382639	Mm.11350	NM_001100460	ENSMUSG00000037638	Zbtb42	EG382639|Gm5188|simiRP58	zinc finger and BTB domain containing 42	protein-coding	0.105000	0.646766	
mm_7754.1	chr1	131097759	131097959	-	1	NA	NA	NA	-16	NM_008551	17164	Mm.221235	NM_008551	ENSMUSG00000016528	Mapkapk2	AA960234|MAPKAP-K2|MK-2|MK2|Rps6kc1	MAP kinase-activated protein kinase 2	protein-coding	0.095000	0.696517	-75(TCCCCTTTAAGG,-,0.00),-74(CCCCTTTAAGGC,-,0.00),-73(CCCTTTAAGGCC,+,0.00),-72(CCTTTAAGGCCC,+,0.00),-12(TCCCCTTTAAGG,-,0.00),-10(CCCTTTAAGGAC,+,0.00)
mm_166328.1	chr5	112840367	112840567	+	1	NA	NA	NA	47175	NR_040676	67360	Mm.59218	NR_040675	ENSMUSG00000098230	1700095B10Rik	-	RIKEN cDNA 1700095B10 gene	ncRNA	0.010000	0.527363	
mm_74839.1	chr8	23256920	23257120	-	1	NA	NA	NA	60	NM_020585	57437	Mm.196269	NM_020585	ENSMUSG00000015341	Golga7	AB041568|C130038N16Rik|GCP16|GOLGA3AP1|HSPC041|R75586	golgi autoantigen, golgin subfamily a, 7	protein-coding	0.080000	0.646766	
mm_141892.1	chr17	34861806	34862006	-	1	NA	NA	NA	608	NM_001142706	14962	Mm.653	NM_008198	ENSMUSG00000090231	Cfb	AI195813|AI255840|B|Bf|C2|Fb|H2-Bf	complement factor B	protein-coding	0.030000	0.577114	
mm_152377.1	chr19	10230946	10231146	-	1	NA	NA	NA	9702	NM_001033481	225908	Mm.329716	NM_001033481	ENSMUSG00000036098	Myrf	6030439E18|Gm1804|Gm98|Mrf	myelin regulatory factor	protein-coding	0.010000	0.537313	
mm_76420.1	chr8	84969671	84969871	-	1	NA	NA	NA	149	NM_011563	21672	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0.045000	0.547264	
mm_97729.1	chr11	80391740	80391940	+	1	NA	NA	NA	8561	NM_001130171	22680	Mm.401332	NM_011751	ENSMUSG00000017421	Zfp207	8430401D15Rik|BuGZ|Zep|Znf207	zinc finger protein 207	protein-coding	0.010000	0.402985	
mm_68728.1	chr7	120202044	120202244	-	1	NA	NA	NA	-156	NM_016669	12971	Mm.9114	NM_016669	ENSMUSG00000030905	Crym	-	crystallin, mu	protein-coding	0.035000	0.582090	
mm_148582.1	chr19	5038793	5038993	+	1	NA	NA	NA	67	NM_175383	108902	Mm.491160	NM_175383	ENSMUSG00000047379	B4gat1	1500032M01Rik|B3gnt1|B3gnt6|BETA3GNT1|iGAT|iGNT	beta-1,4-glucuronyltransferase 1	protein-coding	0.105000	0.706468	
mm_14261.1	chr2	128339808	128340008	+	1	NA	NA	NA	89443	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.020000	0.542289	
mm_17484.1	chr2	28563283	28563483	-	1	NA	NA	NA	20	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.020000	0.552239	
mm_110145.1	chr12	26448574	26448774	-	1	NA	NA	NA	7778	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.005000	0.447761	
mm_115487.1	chr13	3610908	3611108	-	1	NA	NA	NA	100	NM_134063	105203	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	0.110000	0.661692	
mm_67145.1	chr7	73464140	73464340	-	1	NA	NA	NA	77506	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.000000	0.298507	
mm_111994.1	chr12	110695768	110695968	-	1	NA	NA	NA	527	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.105000	0.611940	
mm_20505.1	chr2	130488641	130488841	-	1	NA	NA	NA	38463	NM_001163688	19262	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	0.015000	0.447761	
mm_112321.1	chr12	115194056	115194256	-	1	NA	NA	NA	501638	NR_105810	102465205		NR_105810	ENSMUSG00000098336	Mir6388	Gm27925|mmu-mir-6388	microRNA 6388	ncRNA	0.005000	0.437811	
mm_71000.1	chr8	31089583	31089783	+	1	NA	NA	NA	21	NM_025869	66959	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0.100000	0.676617	
mm_92874.1	chr10	82354067	82354267	-	1	NA	NA	NA	-112892	NM_001105557	237411		NM_172789	ENSMUSG00000062931	Zfp938	B230315N10Rik	zinc finger protein 938	protein-coding	0.015000	0.507463	
mm_10472.1	chr2	14331368	14331568	+	1	NA	NA	NA	-56930	NM_001012305	277468	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0.015000	0.417910	
mm_82944.1	chr9	35305489	35305689	-	1	NA	NA	NA	24484	NR_040715	71133	Mm.158577	NR_040715	ENSMUSG00000111746	4933422A05Rik	-	RIKEN cDNA 4933422A05 gene	ncRNA	0.020000	0.402985	
mm_132958.1	chr16	50044268	50044468	+	1	NA	NA	NA	28484	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.000000	0.522388	
mm_10633.1	chr2	19909902	19910102	+	1	NA	NA	NA	251940	NM_027715	71198	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	0.045000	0.597015	
mm_141198.1	chr17	27028423	27028623	-	1	NA	NA	NA	103	NM_007523	12018	Mm.2443	NM_007523	ENSMUSG00000057789	Bak1	Bak|N-BAK1|N-Bak	BCL2-antagonist/killer 1	protein-coding	0.040000	0.611940	
mm_1523.1	chr1	72826479	72826679	+	1	NA	NA	NA	1192	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.020000	0.562189	
mm_96990.1	chr11	70665207	70665407	+	1	NA	NA	NA	4109	NM_172561	216873	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0.025000	0.532338	
mm_116905.1	chr13	55444785	55444985	-	1	NA	NA	NA	-187	NM_001286063	26385	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	0.060000	0.577114	
mm_22752.1	chr3	19970921	19971121	+	1	NA	NA	NA	13967	NM_007752	12870	Mm.13787	NM_007752	ENSMUSG00000003617	Cp	D3Ertd555e	ceruloplasmin	protein-coding	0.015000	0.457711	
mm_151079.1	chr19	47619631	47619831	+	1	NA	NA	NA	39712	NM_001164639	20874	Mm.281011	NM_009289	ENSMUSG00000025060	Slk	9A2|AV021402|AW411554|Etk4|SMAK|Stk2|mKIAA0204|mSLK	STE20-like kinase	protein-coding	0.010000	0.407960	
mm_27394.1	chr3	50888356	50888556	-	1	NA	NA	NA	-335991	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.020000	0.492537	
mm_53515.1	chr6	136398324	136398524	+	1	NA	NA	NA	17145	NM_001201390	100502936	Mm.21182	NM_001201390	ENSMUSG00000045291	E330021D16Rik	C85549	RIKEN cDNA E330021D16 gene	protein-coding	0.035000	0.507463	
mm_167638.1	chr9	63500627	63500827	+	1	NA	NA	NA	-101483	NM_027090	69478	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	0.005000	0.477612	
mm_77488.1	chr8	122567682	122567882	-	1	NA	NA	NA	-233	NM_026014	67177	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0.110000	0.666667	
mm_134341.1	chr16	16560032	16560232	-	1	NA	NA	NA	87	NM_139232	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.015000	0.472637	
mm_22114.1	chr2	170134478	170134678	-	1	NA	NA	NA	-3358	NM_001033299	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.015000	0.467662	
mm_83609.1	chr9	48605027	48605227	-	1	NA	NA	NA	-4	NM_010924	18113	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0.010000	0.507463	
mm_127503.1	chr15	101447660	101447860	+	1	NA	NA	NA	15	NM_025487	66322	Mm.158111	NM_025487	ENSMUSG00000063971	Krt88	1700011A15Rik	keratin 88	protein-coding	0.005000	0.527363	
mm_133279.1	chr16	77419747	77419947	+	1	NA	NA	NA	90519	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.000000	0.278607	
mm_168061.1	chr10	100913060	100913260	-	1	NA	NA	NA	320774	NM_001081246	66605	Mm.72646	NM_001081246	ENSMUSG00000056912	1700017N19Rik	-	RIKEN cDNA 1700017N19 gene	protein-coding	0.010000	0.422886	
mm_145312.1	chr18	53889041	53889241	+	1	NA	NA	NA	27028	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.025000	0.487562	
mm_74218.1	chr8	124021078	124021278	+	1	NA	NA	NA	131	NM_133966	102162	Mm.291777	NM_133966	ENSMUSG00000038697	Taf5l	1110005N04Rik|AI849020	TATA-box binding protein associated factor 5 like	protein-coding	0.165000	0.810945	
mm_144563.1	chr18	31759922	31760122	+	1	NA	NA	NA	198	NM_153515	225339	Mm.290804	NM_153515	ENSMUSG00000041915	Ammecr1l	5430429D03Rik|AU022236|AU040755|AW111353|E230022H04Rik	AMME chromosomal region gene 1-like	protein-coding	0.100000	0.706468	
mm_71839.1	chr8	68904526	68904726	+	1	NA	NA	NA	24071	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.363184	
mm_163482.1	chr12	107970476	107970676	-	1	NA	NA	NA	32838	NM_001079883	58208	Mm.392694	NM_021399	ENSMUSG00000048251	Bcl11b	9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1	B cell leukemia/lymphoma 11B	protein-coding	0.005000	0.422886	
mm_7625.1	chr1	127425088	127425288	-	1	NA	NA	NA	220202	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.010000	0.537313	
mm_146698.1	chr18	12941734	12941934	-	1	NA	NA	NA	7	NM_207530	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.115000	0.691542	
mm_104813.1	chr11	98959425	98959625	-	1	NA	NA	NA	-946	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.025000	0.537313	
mm_45067.1	chr5	43781974	43782174	-	1	NA	NA	NA	75	NM_001159963	242960	Mm.25794	NM_178729	ENSMUSG00000039753	Fbxl5	Fbl4|Fir4	F-box and leucine-rich repeat protein 5	protein-coding	0.150000	0.766169	
mm_32267.1	chr4	102605661	102605861	+	1	NA	NA	NA	15918	NM_001177981	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.010000	0.328358	
mm_45930.1	chr5	89445313	89445513	-	1	NA	NA	NA	12485	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.000000	0.398010	-9(TCCTATATAGCA,+,0.00)
mm_67.1	chr1	6635906	6636106	+	1	NA	NA	NA	-94045	NR_045189	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.000000	0.328358	
mm_142897.1	chr17	51903856	51904056	-	1	NA	NA	NA	21229	NR_045095	100504169	Mm.417731	NR_045095		Gm20098	-	predicted gene, 20098	ncRNA	0.010000	0.462687	
mm_29539.1	chr3	116711757	116711957	-	1	NA	NA	NA	423	NM_144902	229782	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	0.065000	0.686567	
mm_141150.1	chr17	26506287	26506487	-	1	NA	NA	NA	2085	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.015000	0.582090	69(TACCTTAAAAGC,-,0.00),71(CCTTAAAAGCCC,+,0.00)
mm_45802.1	chr5	87568872	87569072	-	1	NA	NA	NA	34	NM_016771	53315	Mm.6824	NM_016771	ENSMUSG00000029273	Sult1d1	5033411P13Rik|AI987815|ST1d1|SULT-N|Sultn	sulfotransferase family 1D, member 1	protein-coding	0.015000	0.412935	
mm_53585.1	chr6	137537831	137538031	+	1	NA	NA	NA	-18036	NM_001271589	13860	Mm.235346	NM_007945	ENSMUSG00000015766	Eps8	AW261790	epidermal growth factor receptor pathway substrate 8	protein-coding	0.000000	0.472637	
mm_2644.1	chr1	125434789	125434989	+	1	NA	NA	NA	838	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.065000	0.582090	
mm_89615.1	chr10	96044424	96044624	+	1	NA	NA	NA	103861	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.000000	0.442786	
mm_123648.1	chr14	69102853	69103053	-	1	NA	NA	NA	-68849	NM_010920	18092	Mm.390691	NM_010920	ENSMUSG00000044186	Nkx2-6	AV044928|Nkx-2.6|Nkx2.6|Tix|tinman	NK2 homeobox 6	protein-coding	0.005000	0.442786	
mm_13995.1	chr2	121934664	121934864	+	1	NA	NA	NA	-21237	NM_001290992	329506	Mm.249405	NM_212450	ENSMUSG00000033411	Ctdspl2	D2Ertd485e	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2	protein-coding	0.000000	0.348259	
mm_33330.1	chr4	129136594	129136794	+	1	NA	NA	NA	-305	NM_027402	384061	Mm.44075	NM_027402	ENSMUSG00000001334	Fndc5	1500001L03Rik|AI836596|C87088|PeP|Pxp	fibronectin type III domain containing 5	protein-coding	0.055000	0.666667	
mm_158797.1	chrX	167241523	167241723	-	1	NA	NA	NA	22706	NM_001313761	170744	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	0.010000	0.388060	
mm_143281.1	chr17	65772571	65772771	-	1	NA	NA	NA	81	NM_133685	106572	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.130000	0.746269	
mm_156187.1	chrX	133908378	133908578	+	1	NA	NA	NA	53	NM_001083895	68792	Mm.263553	NM_026838	ENSMUSG00000031253	Srpx2	1110039C07Rik|SRP|SRPUL	sushi-repeat-containing protein, X-linked 2	protein-coding	0.005000	0.487562	88(GCTTTAAGACGA,+,0.00)
mm_12902.1	chr2	84809298	84809498	+	1	NA	NA	NA	10570	NM_019949	56791	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.000000	0.562189	
mm_81711.1	chr9	111311722	111311922	+	1	NA	NA	NA	83	NM_001164659	320429	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	0.190000	0.781095	
mm_85258.1	chr9	99396431	99396631	-	1	NA	NA	NA	-38001	NM_177775	272636	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0.000000	0.467662	
mm_25336.1	chr3	106573956	106574156	+	1	NA	NA	NA	-26254	NM_133869	99712	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.015000	0.318408	
mm_53554.1	chr6	136873105	136873305	+	1	NA	NA	NA	2618	NM_008597	17313	Mm.243085	NM_008597	ENSMUSG00000030218	Mgp	Mglap	matrix Gla protein	protein-coding	0.020000	0.442786	
mm_133763.1	chr16	94552117	94552317	+	1	NA	NA	NA	-17989	NM_007890	13548	Mm.310973	NM_007890	ENSMUSG00000022897	Dyrk1a	2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|ENSMUSG00000074897|Gm10783|Mnbh|Mp86|mmb	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a	protein-coding	0.000000	0.507463	
mm_134520.1	chr16	19236000	19236200	-	1	NA	NA	NA	50641	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.000000	0.348259	-27(TTCTTTAAAAGT,-,0.00),-26(TCTTTAAAAGTC,+,0.00)
mm_95053.1	chr11	32384943	32385143	+	1	NA	NA	NA	37232	NM_177364	268396	Mm.227616	NM_177364	ENSMUSG00000040711	Sh3pxd2b	G431001E03Rik|TSK4|fad49	SH3 and PX domains 2B	protein-coding	0.000000	0.358209	
mm_19445.1	chr2	91982708	91982908	-	1	NA	NA	NA	-19245	NM_138306	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.040000	0.597015	
mm_22612.1	chr3	14533778	14533978	+	1	NA	NA	NA	90	NM_028915	71710	Mm.257449	NM_028915	ENSMUSG00000027550	Lrrcc1	1200008A14Rik|4932441F23Rik|AI195358|AI447421	leucine rich repeat and coiled-coil domain containing 1	protein-coding	0.115000	0.691542	
mm_120636.1	chr14	70467584	70467784	+	1	NA	NA	NA	10167	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.015000	0.636816	
mm_45297.1	chr5	65327543	65327743	-	1	NA	NA	NA	7996	NM_011258	19687	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0.000000	0.323383	
mm_64099.1	chr7	141009569	141009769	+	1	NA	NA	NA	1075	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.030000	0.462687	
mm_163234.1	chr11	103953945	103954145	-	1	NA	NA	NA	11	NM_008740	18195	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	0.180000	0.815920	
mm_140014.1	chr17	73204080	73204280	+	1	NA	NA	NA	96195	NM_001177967	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.025000	0.552239	
mm_48813.1	chr5	148996457	148996657	-	1	NA	NA	NA	-1342	NR_102384	319982	Mm.33303	NR_102383	ENSMUSG00000106951	5930430L01Rik	-	RIKEN cDNA 5930430L01 gene	ncRNA	0.015000	0.582090	
mm_144372.1	chr18	20556318	20556518	+	1	NA	NA	NA	-1656	NM_007883	13511	Mm.345891	NM_007883	ENSMUSG00000044393	Dsg2	AA408168|D18Ertd293e	desmoglein 2	protein-coding	0.000000	0.407960	-34(CCTTATAAAAGG,+,0.00),-34(CCTTATAAAAGG,-,0.00)
mm_165703.1	chr3	95653686	95653886	-	1	NA	NA	NA	-4935	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.025000	0.482587	
mm_123428.1	chr14	64440700	64440900	-	1	NA	NA	NA	226	NM_001253715	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.080000	0.646766	
mm_113209.1	chr13	25074606	25074806	+	1	NA	NA	NA	18702	NM_177577	195208	Mm.284719	NM_177577	ENSMUSG00000035910	Dcdc2a	AW492955|Dcdc2|RU2	doublecortin domain containing 2a	protein-coding	0.000000	0.492537	
mm_140093.1	chr17	75527362	75527562	+	1	NA	NA	NA	24484	NM_133747	72722	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0.000000	0.417910	
mm_31214.1	chr4	43972389	43972589	+	1	NA	NA	NA	-11015	NM_001002787	442829	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	0.030000	0.601990	
mm_157412.1	chrX	38441963	38442163	-	1	NA	NA	NA	14397	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.005000	0.308458	-23(GCCTTTATGCAG,+,0.00)
mm_121349.1	chr14	116925227	116925427	+	1	NA	NA	NA	30	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.025000	0.542289	
mm_122860.1	chr14	54894796	54894996	-	1	NA	NA	NA	753	NM_019402	54196	Mm.7723	NM_019402	ENSMUSG00000022194	Pabpn1	PAB2|Pabp3|mPABII	poly(A) binding protein, nuclear 1	protein-coding	0.040000	0.532338	
mm_58942.1	chr7	18245294	18245494	+	1	NA	NA	NA	47	NM_153749	266815	Mm.106769	NM_153749	ENSMUSG00000054005	Mill1	5530400I18Rik	MHC I like leukocyte 1	protein-coding	0.000000	0.542289	
mm_120007.1	chr14	55650132	55650332	+	1	NA	NA	NA	48	NM_001253889	71099	Mm.171300	NM_027673	ENSMUSG00000007591	Tssk4	1700020B19Rik|4933424F08Rik|TSK-4|TSSK-4	testis-specific serine kinase 4	protein-coding	0.010000	0.492537	
mm_22704.1	chr3	18533414	18533614	+	1	NA	NA	NA	-53037	NR_040544	73959	Mm.60616	NR_040544	ENSMUSG00000102699	4930433B08Rik	-	RIKEN cDNA 4930433B08 gene	ncRNA	0.010000	0.427861	
mm_9875.1	chr1	185203728	185203928	-	1	NA	NA	NA	-340	NM_001163754	98732	Mm.275841	NM_172649	ENSMUSG00000039318	Rab3gap2	1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839	RAB3 GTPase activating protein subunit 2	protein-coding	0.035000	0.447761	
mm_12589.1	chr2	73561007	73561207	+	1	NA	NA	NA	19231	NM_007389	11435	Mm.4583	NM_007389	ENSMUSG00000027107	Chrna1	AI385656|AI608266|Achr-1|Acra	cholinergic receptor, nicotinic, alpha polypeptide 1 (muscle)	protein-coding	0.050000	0.597015	
mm_152653.1	chr19	12767656	12767856	-	1	NA	NA	NA	-2124	NM_170786	12803	Mm.290924	NM_053007	ENSMUSG00000079415	Cntf	AI429687	ciliary neurotrophic factor	protein-coding	0.010000	0.427861	-75(CCCCATAAAAGC,-,0.00)
mm_26052.1	chr3	135816760	135816960	+	1	NA	NA	NA	-8419	NM_026228	67547	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.010000	0.467662	
mm_84336.1	chr9	64157948	64158148	-	1	NA	NA	NA	14883	NM_026507	68014	Mm.335237	NM_026507	ENSMUSG00000032400	Zwilch	2310031L18Rik	zwilch kinetochore protein	protein-coding	0.000000	0.353234	
mm_112562.1	chr13	13468302	13468502	+	1	NA	NA	NA	30800	NM_010917	18073	Mm.4691	NM_010917	ENSMUSG00000005397	Nid1	A630025O17|Nid|entactin|entactin-1|nidogen-1	nidogen 1	protein-coding	0.015000	0.542289	
mm_54440.1	chr6	34415356	34415556	-	1	NA	NA	NA	3094	NM_009731	11997	Mm.482073	NM_009731	ENSMUSG00000052131	Akr1b7	AR|Avdp|MVDP	aldo-keto reductase family 1, member B7	protein-coding	0.015000	0.482587	
mm_82094.1	chr9	123056349	123056549	+	1	NA	NA	NA	21708	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.030000	0.547264	
mm_120389.1	chr14	64590345	64590545	+	1	NA	NA	NA	-212	NR_029813	387233		NR_029813	ENSMUSG00000065597	Mir124a-1	Mirn124a|Mirn124a-1	microRNA 124a-1	ncRNA	0.050000	0.552239	
mm_92801.1	chr10	81364753	81364953	-	1	NA	NA	NA	967	NM_001014836	432479	Mm.440450	NM_001014836	ENSMUSG00000020234	4930404N11Rik	2210409H10Rik|5730551K18Rik|AI854616	RIKEN cDNA 4930404N11 gene	protein-coding	0.095000	0.651741	
mm_58182.1	chr6	142903260	142903460	-	1	NA	NA	NA	61092	NM_011374	20449	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0.000000	0.308458	
mm_10146.1	chr2	4300495	4300695	+	1	NA	NA	NA	-100381	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.025000	0.552239	
mm_47203.1	chr5	120906785	120906985	-	1	NA	NA	NA	640	NM_145211	246730	Mm.14301	NM_145211	ENSMUSG00000052776	Oas1a	L3	2'-5' oligoadenylate synthetase 1A	protein-coding	0.015000	0.517413	
mm_101634.1	chr11	36432698	36432898	-	1	NA	NA	NA	-452709	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.020000	0.467662	
mm_95181.1	chr11	42419657	42419857	+	1	NA	NA	NA	0	NM_008070	14401	Mm.338723	NM_008070	ENSMUSG00000007653	Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding	0.025000	0.606965	
mm_98234.1	chr11	88099069	88099269	+	1	NA	NA	NA	23	NM_198013	103841	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	0.150000	0.786070	
mm_173076.1	chrX	136224804	136225004	-	1	NA	NA	NA	863	NM_001127169	100040972	Mm.18125	NM_001127169	ENSMUSG00000079428	Tceal7	1110018P05Rik	transcription elongation factor A (SII)-like 7	protein-coding	0.010000	0.402985	
mm_36392.1	chr4	77525864	77526064	-	1	NA	NA	NA	685931	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.368159	
mm_86960.1	chr10	25109843	25110043	+	1	NA	NA	NA	90227	NM_001347460	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.000000	0.368159	
mm_8022.1	chr1	135105093	135105293	-	1	NA	NA	NA	83	NM_001033409	329252	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0.145000	0.776119	
mm_90017.1	chr10	115362461	115362661	+	1	NA	NA	NA	-299	NM_133683	67226	Mm.29647	NM_133683	ENSMUSG00000069520	Tmem19	2810428F02Rik|AW125171	transmembrane protein 19	protein-coding	0.085000	0.577114	
mm_98383.1	chr11	94139819	94140019	+	1	NA	NA	NA	-71535	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.010000	0.467662	
mm_54536.1	chr6	36715606	36715806	-	1	NA	NA	NA	95655	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.015000	0.388060	60(CCATTTATACCT,+,0.00)
mm_102632.1	chr11	62539126	62539326	-	1	NA	NA	NA	35	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.160000	0.786070	
mm_63525.1	chr7	127912419	127912619	+	1	NA	NA	NA	2	NM_026370	67773	Mm.425492	NM_026370	ENSMUSG00000030801	Kat8	2010203C02Rik|5830450F21Rik|D7Ertd629e|MOF|Myst1	K(lysine) acetyltransferase 8	protein-coding	0.050000	0.592040	
mm_1398.1	chr1	67142843	67143043	+	1	NA	NA	NA	19916	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.030000	0.542289	
mm_107007.1	chr12	11326062	11326262	+	1	NA	NA	NA	26275	NR_106136	102465775		NR_106136	ENSMUSG00000098879	Mir7675	Gm27965|mmu-mir-7675	microRNA 7675	ncRNA	0.000000	0.427861	-3(CCATTTATAGGT,+,0.00)
mm_82838.1	chr9	31163331	31163531	-	1	NA	NA	NA	-31632	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.005000	0.437811	
mm_59980.1	chr7	30465274	30465474	+	1	NA	NA	NA	217	NR_004443	445267	Mm.398140	NR_004443	ENSMUSG00000087009	Nphs1os	Nphs1as	nephrosis 1 homolog, nephrin, opposite strand	ncRNA	0.030000	0.567164	
mm_145236.1	chr18	50181240	50181440	+	1	NA	NA	NA	53139	NM_008292	15488	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.015000	0.427861	7(TCTTTAATGGCA,+,0.00)
mm_135145.1	chr16	35857104	35857304	-	1	NA	NA	NA	14178	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.040000	0.532338	
mm_39160.1	chr4	155601174	155601374	-	1	NA	NA	NA	-142	NM_177186	320541	Mm.306018	NM_177186	ENSMUSG00000042202	Slc35e2	A530082C11Rik|AI957035	solute carrier family 35, member E2	protein-coding	0.050000	0.616915	
mm_87372.1	chr10	44268334	44268534	+	1	NA	NA	NA	95	NM_053069	11793	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0.110000	0.686567	
mm_99560.1	chr11	103649607	103649807	+	1	NA	NA	NA	198	NM_001033212	104582	Mm.44618	NM_001033212	ENSMUSG00000046215	Rprml	AW049332	reprimo-like	protein-coding	0.105000	0.706468	
mm_168715.1	chr12	103714044	103714244	-	1	NA	NA	NA	-18615	NM_026687	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding	0.000000	0.452736	
mm_114031.1	chr13	52646913	52647113	+	1	NA	NA	NA	50131	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.010000	0.487562	
mm_112024.1	chr12	111454051	111454251	-	1	NA	NA	NA	11490	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.015000	0.567164	
mm_110166.1	chr12	27334678	27334878	-	1	NA	NA	NA	7940	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.000000	0.368159	0(CCCTCTATAAGC,-,0.00)
mm_104121.1	chr11	86752420	86752620	-	1	NA	NA	NA	4972	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.000000	0.388060	
mm_2851.1	chr1	131672188	131672388	+	1	NA	NA	NA	-16407	NM_145509	226421	Mm.44508	NM_145509	ENSMUSG00000052688	Rab7b	5430435G22Rik	RAB7B, member RAS oncogene family	protein-coding	0.015000	0.562189	
mm_163037.1	chr11	53350815	53351015	+	1	NA	NA	NA	148	NM_033565	93736	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.135000	0.800995	
mm_303.1	chr1	23761719	23761919	+	1	NA	NA	NA	-107	NM_172124	280645	Mm.471661	NM_172124	ENSMUSG00000026156	B3gat2	GlcAT-S|Glcats	beta-1,3-glucuronyltransferase 2 (glucuronosyltransferase S)	protein-coding	0.055000	0.686567	
mm_155936.1	chrX	103630507	103630707	+	1	NA	NA	NA	21	NM_029158	75064	Mm.159414	NM_029158	ENSMUSG00000031330	Zcchc13	4930513O09Rik|Cnbp2	zinc finger, CCHC domain containing 13	protein-coding	0.040000	0.562189	
mm_118955.1	chr14	27379553	27379753	+	1	NA	NA	NA	18264	NM_001289688	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.050000	0.557214	
mm_171397.1	chr4	122473967	122474167	+	1	NA	NA	NA	-215192	NM_023865	77432	Mm.491436	NM_023865	ENSMUSG00000023263	9530002B09Rik	Aump|Vpp1|Vppl	RIKEN cDNA 9530002B09 gene	protein-coding	0.020000	0.522388	-30(TCCTATATAAGC,-,0.00)
mm_72623.1	chr8	84638890	84639090	+	1	NA	NA	NA	23862	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.085000	0.691542	
mm_78909.1	chr9	44920104	44920304	+	1	NA	NA	NA	538	NM_013795	27425	Mm.14663	NM_013795	ENSMUSG00000038717	Atp5l	4933437C06Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G	protein-coding	0.045000	0.472637	
mm_87963.1	chr10	63386483	63386683	+	1	NA	NA	NA	20	NM_013888	30045	Mm.32550	NM_013888	ENSMUSG00000036764	Dnajc12	Jdp1|mJDP1	DnaJ heat shock protein family (Hsp40) member C12	protein-coding	0.045000	0.567164	
mm_76464.1	chr8	85365297	85365497	-	1	NA	NA	NA	-73	NM_175441	213435	Mm.32804	NM_175441	ENSMUSG00000031698	Mylk3	D830007F02Rik|MLCK	myosin light chain kinase 3	protein-coding	0.010000	0.542289	-87(GCCTCTTAAAGA,-,0.00),-86(CCTCTTAAAGAG,+,0.00)
mm_70797.1	chr8	22757653	22757853	+	1	NA	NA	NA	31	NM_008872	18791	Mm.154660	NM_008872	ENSMUSG00000031538	Plat	AU020998|AW212668|D8Ertd2e|tPA	plasminogen activator, tissue	protein-coding	0.020000	0.562189	
mm_130694.1	chr15	100682864	100683064	-	1	NA	NA	NA	4956	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.020000	0.557214	
mm_3858.1	chr1	160978513	160978713	+	1	NA	NA	NA	7	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.020000	0.427861	87(GACTTTAAGGGG,-,0.00)
mm_145920.1	chr18	67066532	67066732	+	1	NA	NA	NA	-21666	NM_177137	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.025000	0.537313	73(CCATTTAAAGCC,+,0.00)
mm_22563.1	chr3	9984134	9984334	+	1	NA	NA	NA	-28351	NM_001272097	16592	Mm.741	NM_010634	ENSMUSG00000027533	Fabp5	E-FABP|Fabpe|Klbp|PA-FABP|mal1	fatty acid binding protein 5, epidermal	protein-coding	0.005000	0.472637	
mm_70571.1	chr8	13159259	13159459	+	1	NA	NA	NA	198	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.160000	0.805970	
mm_103101.1	chr11	69939222	69939422	-	1	NA	NA	NA	2994	NM_001347634	53422	Mm.29286	NM_016875	ENSMUSG00000018554	Ybx2	Msy2	Y box protein 2	protein-coding	0.015000	0.577114	
mm_94704.1	chr11	20231370	20231570	+	1	NA	NA	NA	17954	NM_172260	216543	Mm.260314	NM_172260	ENSMUSG00000044066	Cep68	6030463E10Rik|AI481761|BC027174|Kiaa0582	centrosomal protein 68	protein-coding	0.010000	0.517413	
mm_154033.1	chr19	53464677	53464877	-	1	NA	NA	NA	19	NR_028427	381232	Mm.248624	NR_028427	ENSMUSG00000097636	Mirt1	4833407H14Rik|5430437C04Rik|5830416P10Rik|ENSMUSG00000074788|Gm10758	myocardial infarction associated transcript 1	ncRNA	0.015000	0.502488	
mm_111746.1	chr12	103906931	103907131	-	1	NA	NA	NA	-2081	NM_009245	20702	Mm.439692	NM_009245	ENSMUSG00000079015	Serpina1c	Pi3|Pi6|Skalp|Spi1-3|Spi1-6|Wap3	serine (or cysteine) peptidase inhibitor, clade A, member 1C	protein-coding	0.005000	0.552239	
mm_87942.1	chr10	62920538	62920738	+	1	NA	NA	NA	5	NM_175194	73132	Mm.37457	NM_175194	ENSMUSG00000071253	Slc25a16	3110021G18Rik|GDA|GDC|HGT.1|ML7	solute carrier family 25 (mitochondrial carrier, Graves disease autoantigen), member 16	protein-coding	0.105000	0.696517	
mm_69500.1	chr7	134231949	134232149	-	1	NA	NA	NA	-6952	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.015000	0.562189	
mm_11924.1	chr2	52072801	52073001	+	1	NA	NA	NA	64	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.165000	0.800995	
mm_163247.1	chr11	106301067	106301267	+	1	NA	NA	NA	729	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.030000	0.577114	
mm_44897.1	chr5	35399865	35400065	-	1	NA	NA	NA	10848	NM_010445	15371	Mm.358606	NM_010445	ENSMUSG00000067438	Hmx1	Nkx5-3	H6 homeobox 1	protein-coding	0.085000	0.661692	
mm_95201.1	chr11	43445095	43445295	+	1	NA	NA	NA	11464	NM_198936	193116	Mm.28200	NM_148673	ENSMUSG00000020409	Slu7	AU018913|D11Ertd730e|D3Bwg0878e	SLU7 splicing factor homolog (S. cerevisiae)	protein-coding	0.020000	0.447761	
mm_147920.1	chr18	65766990	65767190	-	1	NA	NA	NA	-33488	NM_025468	66286	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0.020000	0.507463	
mm_81313.1	chr9	108393039	108393239	+	1	NA	NA	NA	305	NM_053216	112418	Mm.78287	NM_053216	ENSMUSG00000032611	1700102P08Rik	AI593206	RIKEN cDNA 1700102P08 gene	protein-coding	0.055000	0.472637	88(GCTTTTAGGGAA,+,0.00)
mm_92106.1	chr10	63023715	63023915	-	1	NA	NA	NA	34	NM_001079824	432467	Mm.274784	NM_001079824	ENSMUSG00000020069	Hnrnph3	AA693301|AI666703|Hnrph3	heterogeneous nuclear ribonucleoprotein H3	protein-coding	0.135000	0.726368	
mm_95342.1	chr11	48715979	48716179	+	1	NA	NA	NA	-84281	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.000000	0.477612	
mm_12822.1	chr2	80316914	80317114	+	1	NA	NA	NA	1548	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.005000	0.482587	
mm_156710.1	chrX	159627371	159627571	+	1	NA	NA	NA	199	NM_001135727	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.075000	0.636816	
mm_8942.1	chr1	164437888	164438088	-	1	NA	NA	NA	20367	NM_009721	11931	Mm.4550	NM_009721	ENSMUSG00000026576	Atp1b1	Atp4b|Atpb|Atpb-1|NKbeta1	ATPase, Na+/K+ transporting, beta 1 polypeptide	protein-coding	0.020000	0.373134	
mm_32562.1	chr4	109676479	109676679	+	1	NA	NA	NA	-48	NM_007983	14084	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	0.115000	0.706468	
mm_79759.1	chr9	62389859	62390059	+	1	NA	NA	NA	48616	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.030000	0.462687	
mm_75042.1	chr8	32762942	32763142	-	1	NA	NA	NA	186984	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding	0.000000	0.313433	
mm_158372.1	chrX	135035995	135036195	-	1	NA	NA	NA	507	NR_040281	320606	Mm.439072	NR_040281	ENSMUSG00000089759	3632454L22Rik	-	RIKEN cDNA 3632454L22 gene	ncRNA	0.080000	0.651741	
mm_78780.1	chr9	43804107	43804307	+	1	NA	NA	NA	59631	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	0.015000	0.487562	66(TCCTTTAAGGAC,+,0.00),67(CCTTTAAGGACC,+,0.00)
mm_40371.1	chr5	52189766	52189966	+	1	NA	NA	NA	680	NR_104311	13204	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	0.040000	0.532338	-34(CTACTTAAAAGC,-,0.00),-17(CGGCTTTTAAGC,-,0.00),-15(GCTTTTAAGCAA,+,0.00)
mm_164736.1	chr17	68406102	68406302	+	1	NA	NA	NA	132405	NM_177278	320858	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	l(3)mbt-like 4 (Drosophila)	protein-coding	0.000000	0.502488	-39(CCCTTTATAAGC,+,0.00),-39(CCCTTTATAAGC,-,0.00)
mm_108278.1	chr12	78911832	78912032	+	1	NA	NA	NA	-4994	NM_013738	27260	Mm.103380	NM_013738	ENSMUSG00000021118	Plek2	-	pleckstrin 2	protein-coding	0.035000	0.582090	
mm_129698.1	chr15	81586383	81586583	-	1	NA	NA	NA	269	NM_177821	328572	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.070000	0.651741	
mm_14344.1	chr2	129593146	129593346	+	1	NA	NA	NA	77	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.145000	0.756219	
mm_166332.1	chr5	114024944	114025144	+	1	NA	NA	NA	20236	NM_001286396	13142	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	0.020000	0.651741	
mm_147564.1	chr18	54990034	54990234	-	1	NA	NA	NA	46	NM_175751	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.015000	0.507463	84(TTTTTTAAGGAG,+,0.00)
mm_15501.1	chr2	157914566	157914766	+	1	NA	NA	NA	13	NM_198627	277432	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0.160000	0.820896	
mm_76442.1	chr8	85025135	85025335	-	1	NA	NA	NA	43	NM_019652	56495	Mm.41475	NM_019652	ENSMUSG00000052456	Asna1	1810048H22Rik|ArsA	arsA arsenite transporter, ATP-binding, homolog 1 (bacterial)	protein-coding	0.080000	0.592040	
mm_132793.1	chr16	45093573	45093773	+	1	NA	NA	NA	-380	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.005000	0.437811	
mm_71715.1	chr8	61947338	61947538	+	1	NA	NA	NA	19351	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.025000	0.417910	
mm_87216.1	chr10	39899228	39899428	+	1	NA	NA	NA	-90	NR_033628	213332	Mm.484359	NR_033628		Mfsd4b4	AA474331	major facilitator superfamily domain containing 4B4	pseudo	0.045000	0.572139	
mm_52099.1	chr6	97862812	97863012	+	1	NA	NA	NA	55854	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.462687	
mm_73385.1	chr8	105686151	105686351	+	1	NA	NA	NA	-4655	NM_001033320	234695	Mm.471640	NM_001033320	ENSMUSG00000050357	Carmil2	CG1399-PB|D130029J02Rik|Gm585|Rltpr	capping protein regulator and myosin 1 linker 2	protein-coding	0.050000	0.641791	
mm_75441.1	chr8	47413744	47413944	-	1	NA	NA	NA	-61496	NM_175162	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.090000	0.681592	
mm_131603.1	chr16	19067139	19067339	+	1	NA	NA	NA	190489	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.005000	0.412935	-28(CCTTTTATAGGC,+,0.00)
mm_4076.1	chr1	166254065	166254265	+	1	NA	NA	NA	26	NM_001164528	100039795	Mm.101743	NM_001164528	ENSMUSG00000040612	Ildr2	2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|ENSMUSG00000040612|Ll	immunoglobulin-like domain containing receptor 2	protein-coding	0.180000	0.786070	
mm_161673.1	chr17	14961004	14961204	-	1	NA	NA	NA	156	NM_024250	72057	Mm.440085	NM_024250	ENSMUSG00000023883	Phf10	1810055P05Rik|AV024533	PHD finger protein 10	protein-coding	0.120000	0.771144	
mm_158779.1	chrX	167207056	167207256	-	1	NA	NA	NA	2062	NM_021278	19241	Mm.142729	NM_021278	ENSMUSG00000049775	Tmsb4x	Ptmb4|Tb4	thymosin, beta 4, X chromosome	protein-coding	0.000000	0.333333	
mm_141068.1	chr17	25796954	25797154	-	1	NA	NA	NA	-9	NM_133719	70083	Mm.41925	NM_133719	ENSMUSG00000002274	Metrn	1810034B16Rik|Hyrac	meteorin, glial cell differentiation regulator	protein-coding	0.130000	0.766169	
mm_32956.1	chr4	119658432	119658632	+	1	NA	NA	NA	413	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.000000	0.532338	
mm_171497.1	chr4	146224634	146224834	-	1	NA	NA	NA	-45651	NM_001083918	666532	Mm.392861	NM_001083918	ENSMUSG00000067916	Zfp991	Gm13139|OTTMUSG00000010657	zinc finger protein 991	protein-coding	0.070000	0.572139	
mm_57267.1	chr6	123286938	123287138	-	1	NA	NA	NA	2833	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.005000	0.393035	
mm_2569.1	chr1	118413743	118413943	+	1	NA	NA	NA	24785	NM_001293301	76707	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	0.000000	0.363184	
mm_119.1	chr1	9797913	9798113	+	1	NA	NA	NA	-117	NM_133220	170755	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.175000	0.791045	
mm_104435.1	chr11	94951562	94951762	-	1	NA	NA	NA	15438	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.015000	0.487562	
mm_42843.1	chr5	122149506	122149706	+	1	NA	NA	NA	-8673	NM_013636	19047	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	0.010000	0.537313	
mm_166783.1	chr6	143035066	143035266	-	1	NA	NA	NA	64986	NM_001286578	74741	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.010000	0.402985	-48(AACCTTAAAAGC,-,0.00)
mm_56316.1	chr6	92242649	92242849	-	1	NA	NA	NA	1901	NM_009426	22044	Mm.1363	NM_009426	ENSMUSG00000005892	Trh	Pro-TRH|Trf	thyrotropin releasing hormone	protein-coding	0.010000	0.572139	
mm_25511.1	chr3	110145418	110145618	+	1	NA	NA	NA	-2046	NM_030699	80883	Mm.39262	NM_030699	ENSMUSG00000059857	Ntng1	A930010C08Rik|AI853992|Lmnt1	netrin G1	protein-coding	0.005000	0.417910	
mm_118778.1	chr14	23432402	23432602	+	1	NA	NA	NA	-337931	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	ENSMUSG00000068680	predicted gene 10248	ncRNA	0.005000	0.427861	
mm_115435.1	chr13	117273215	117273415	+	1	NA	NA	NA	52742	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.015000	0.368159	-80(TTCCATTAAAGC,-,0.00)
mm_19564.1	chr2	101620950	101621150	-	1	NA	NA	NA	-3698	NM_009020	19374	Mm.4988	NM_009020	ENSMUSG00000032864	Rag2	Rag-2	recombination activating gene 2	protein-coding	0.010000	0.507463	
mm_171541.1	chr4	146971950	146972150	+	1	NA	NA	NA	-49800	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.020000	0.552239	
mm_91007.1	chr10	14546193	14546393	-	1	NA	NA	NA	-1257	NM_001002268	215798	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.025000	0.517413	-71(ACTTTTATGGCT,+,0.00)
mm_166666.1	chr6	90570691	90570891	+	1	NA	NA	NA	19943	NM_027406	107747	Mm.30035	NM_027406	ENSMUSG00000030088	Aldh1l1	1810048F20Rik|FDH|Fthfd|Neut2	aldehyde dehydrogenase 1 family, member L1	protein-coding	0.035000	0.532338	
mm_80396.1	chr9	76312361	76312561	+	1	NA	NA	NA	11117	NM_198962	387285	Mm.335300	NM_198962	ENSMUSG00000032360	Hcrtr2	OX2R|mOX2aR|mOX2bR|mOXR2	hypocretin (orexin) receptor 2	protein-coding	0.005000	0.502488	
mm_77734.1	chr8	126895142	126895342	-	1	NA	NA	NA	50679	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.010000	0.522388	
mm_152200.1	chr19	7583234	7583434	-	1	NA	NA	NA	23842	NM_019516	56072	Mm.298242	NM_019516	ENSMUSG00000024972	Lgals12	AW987437|Grip1	lectin, galactose binding, soluble 12	protein-coding	0.020000	0.537313	
mm_41341.1	chr5	90498186	90498386	+	1	NA	NA	NA	7572	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.020000	0.402985	
mm_128726.1	chr15	64060359	64060559	-	1	NA	NA	NA	-11	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.160000	0.766169	69(CCTTTTATAGCG,+,0.00)
mm_94428.1	chr11	6291574	6291774	+	1	NA	NA	NA	77	NM_001252283	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.110000	0.706468	
mm_28508.1	chr3	92573651	92573851	-	1	NA	NA	NA	-16	NM_008412	16447	Mm.207365	NM_008412	ENSMUSG00000049128	Ivl	1110019C06Rik	involucrin	protein-coding	0.000000	0.512438	-16(CAATATAAAGGG,-,0.00)
mm_139251.1	chr17	47734247	47734447	+	1	NA	NA	NA	-2690	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.020000	0.567164	
mm_150069.1	chr19	29386440	29386640	+	1	NA	NA	NA	19102	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.010000	0.402985	
mm_98008.1	chr11	84179772	84179972	+	1	NA	NA	NA	-12396	NM_001037932	628813	Mm.390389	NM_001037932	ENSMUSG00000051452	Gm11437	AI463690|OTTMUSG00000000997	predicted gene 11437	protein-coding	0.145000	0.781095	
mm_77330.1	chr8	119501612	119501812	-	1	NA	NA	NA	-14	NM_001009950	234788	Mm.302096	NM_001009950	ENSMUSG00000034224	Slc38a8	Gm587	solute carrier family 38, member 8	protein-coding	0.005000	0.522388	
mm_50004.1	chr6	41057633	41057833	+	1	NA	NA	NA	-22224	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.010000	0.447761	
mm_141989.1	chr17	35172488	35172688	-	1	NA	NA	NA	3413	NM_019467	11629	Mm.10747	NM_019467	ENSMUSG00000024397	Aif1	AI607846|AIF-1|D17H6S50E|G1|Iba1	allograft inflammatory factor 1	protein-coding	0.015000	0.567164	
mm_151186.1	chr19	53421221	53421421	+	1	NA	NA	NA	-30748	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	0.025000	0.552239	
mm_61552.1	chr7	79398573	79398773	+	1	NA	NA	NA	6335	NM_145946	208836	Mm.349493	NM_145946	ENSMUSG00000039187	Fanci	-	Fanconi anemia, complementation group I	protein-coding	0.010000	0.467662	
mm_50379.1	chr6	48685064	48685264	+	1	NA	NA	NA	586	NM_174990	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.015000	0.497512	
mm_155357.1	chrX	69415226	69415426	+	1	NA	NA	NA	54995	NM_008032	14266	Mm.466576	NM_008032	ENSMUSG00000031189	Aff2	FMR2P|Fmr2|Ox19|Oxh	AF4/FMR2 family, member 2	protein-coding	0.005000	0.477612	
mm_88936.1	chr10	81292883	81293083	+	1	NA	NA	NA	20	NM_001146687	18717	Mm.24222	NM_008844	ENSMUSG00000034902	Pip5k1c	AI115456|AI835305|Pip5kIgamma	phosphatidylinositol-4-phosphate 5-kinase, type 1 gamma	protein-coding	0.130000	0.716418	
mm_44588.1	chr5	24925290	24925490	-	1	NA	NA	NA	-16881	NM_001170555	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.010000	0.492537	
mm_33800.1	chr4	134926583	134926783	+	1	NA	NA	NA	3058	NM_023665	27981	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.005000	0.308458	
mm_82220.1	chr9	3022112	3022312	-	1	NA	NA	NA	16531	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.030000	0.358209	
mm_12555.1	chr2	72444565	72444765	+	1	NA	NA	NA	-31554	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.005000	0.527363	
mm_1159.1	chr1	60903326	60903526	+	1	NA	NA	NA	-5599	NM_009843	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.020000	0.432836	
mm_100386.1	chr11	119354962	119355162	+	1	NA	NA	NA	448	NM_018822	27029	Mm.103788	NM_018822	ENSMUSG00000005043	Sgsh	4632406A19Rik	N-sulfoglucosamine sulfohydrolase (sulfamidase)	protein-coding	0.015000	0.522388	
mm_148924.1	chr19	6985943	6986143	+	1	NA	NA	NA	1608	NM_001185164	22340	Mm.15607	NM_011697	ENSMUSG00000024962	Vegfb	VEGF-B|Vrf	vascular endothelial growth factor B	protein-coding	0.010000	0.577114	
mm_42314.1	chr5	114882371	114882571	+	1	NA	NA	NA	-14463	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.020000	0.507463	
mm_88136.1	chr10	69398836	69399036	+	1	NA	NA	NA	-46024	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.115000	0.741294	
mm_92278.1	chr10	71238181	71238381	-	1	NA	NA	NA	-237	NM_009360	21780	Mm.229292	NM_009360	ENSMUSG00000003923	Tfam	AI661103|Hmgts|mtTFA|tsHMG	transcription factor A, mitochondrial	protein-coding	0.035000	0.631841	
mm_103348.1	chr11	74770592	74770792	-	1	NA	NA	NA	-171	NM_026197	67493	Mm.45748	NM_026197	ENSMUSG00000010554	Mettl16	2610100D03Rik|2810013M15Rik|A830095F14Rik|AI846133|Mett10d	methyltransferase like 16	protein-coding	0.045000	0.587065	
mm_157589.1	chrX	53114302	53114502	-	1	NA	NA	NA	3	NM_019538	56096	Mm.274842	NM_019538	ENSMUSG00000061082	Plac1	DXWsu72e|Epcs26|Oosp2l	placental specific protein 1	protein-coding	0.035000	0.507463	-33(GCATATATAGAA,+,0.00)
mm_10164.1	chr2	4401415	4401615	+	1	NA	NA	NA	539	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.085000	0.631841	
mm_5206.1	chr1	13565153	13565353	-	1	NA	NA	NA	24657	NM_028173	72265	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	0.010000	0.283582	
mm_82545.1	chr9	20896072	20896272	-	1	NA	NA	NA	2418	NM_016876	53356	Mm.427309	NM_016876	ENSMUSG00000070319	Eif3g	44kDa|D0Jmb4|Eif3s4|TU-189B2|eIF3-p44|p44	eukaryotic translation initiation factor 3, subunit G	protein-coding	0.015000	0.527363	
mm_2515.1	chr1	106251767	106251967	+	1	NA	NA	NA	79998	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.025000	0.457711	
mm_72526.1	chr8	83978343	83978543	+	1	NA	NA	NA	1560	NM_001277898	18747	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0.030000	0.577114	-76(GCCTTTAAATGC,+,0.00),-76(GCCTTTAAATGC,-,0.00)
mm_105374.1	chr11	103237794	103237994	-	1	NA	NA	NA	-19462	NM_177801	328019	Mm.189646	NM_177801	ENSMUSG00000044787	Spata32	4933400C05Rik|VAD1.2	spermatogenesis associated 32	protein-coding	0.020000	0.527363	
mm_91557.1	chr10	39960163	39960363	-	1	NA	NA	NA	-110	NM_001173500	100041085	Mm.332530	NM_001173500	ENSMUSG00000071335	Mfsd4b3	G630090E17Rik|Naglt1c	major facilitator superfamily domain containing 4B3	protein-coding	0.035000	0.527363	
mm_3541.1	chr1	150395168	150395368	+	1	NA	NA	NA	-2213	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.005000	0.412935	
mm_91017.1	chr10	17495874	17496074	-	1	NA	NA	NA	-227254	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.015000	0.398010	
mm_34500.1	chr4	148602559	148602759	+	1	NA	NA	NA	115	NM_001003893	17175	Mm.378962	NM_010767	ENSMUSG00000028979	Masp2	MASP-2|MAp19	mannan-binding lectin serine peptidase 2	protein-coding	0.015000	0.592040	
mm_131660.1	chr16	20609899	20610099	+	1	NA	NA	NA	750	NM_145939	208624	Mm.24950	NM_145939	ENSMUSG00000033809	Alg3	D16Ertd36e|not	asparagine-linked glycosylation 3 (alpha-1,3-mannosyltransferase)	protein-coding	0.000000	0.442786	-26(GTCTTTATAAGC,-,0.00)
mm_165399.1	chr2	136058006	136058206	+	1	NA	NA	NA	179	NM_029530	76161	Mm.41638	NM_029530	ENSMUSG00000027270	Lamp5	3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5	lysosomal-associated membrane protein family, member 5	protein-coding	0.045000	0.572139	
mm_56253.1	chr6	90764203	90764403	-	1	NA	NA	NA	45820	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.040000	0.681592	
mm_109047.1	chr12	104300620	104300820	+	1	NA	NA	NA	-13850	NM_001101472	238395	Mm.436975	NM_001101472	ENSMUSG00000079013	Serpina3j	AI506554|EG238395|Gm4931	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 3J	protein-coding	0.000000	0.457711	
mm_39629.1	chr5	24428666	24428866	+	1	NA	NA	NA	1245	NM_001253892	20535	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0.025000	0.691542	
mm_91469.1	chr10	34197666	34197866	-	1	NA	NA	NA	9785	NM_172508	212898	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.000000	0.407960	
mm_170302.1	chr18	33514903	33515103	+	1	NA	NA	NA	50840	NR_045415	433171	Mm.353332	NR_045415		Gm10549	ENSMUSG00000073610	predicted gene 10549	ncRNA	0.000000	0.417910	-14(GGCCTTATAAGC,-,0.00)
mm_147226.1	chr18	38203747	38203947	-	1	NA	NA	NA	5915	NM_029357	75599	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.040000	0.597015	
mm_34052.1	chr4	138262124	138262324	+	1	NA	NA	NA	-27	NM_001190978	16559	Mm.271936	NM_010623	ENSMUSG00000028758	Kif17	5930435E01Rik|AW492270|Kif17b|mKIAA1405	kinesin family member 17	protein-coding	0.160000	0.766169	
mm_25598.1	chr3	116903576	116903776	+	1	NA	NA	NA	41996	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.005000	0.417910	19(TGGTTTTAAGGG,-,0.00)
mm_78549.1	chr9	35421531	35421731	+	1	NA	NA	NA	-30445	NM_021339	57810	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	0.170000	0.830846	
mm_160318.1	chr7	142658712	142658912	-	1	NA	NA	NA	-8	NM_010514	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.070000	0.631841	
mm_36138.1	chr4	59351638	59351838	-	1	NA	NA	NA	86895	NM_001163288	634731	Mm.483589	NM_001163288	ENSMUSG00000038578	Susd1	A530080P10|Gm12528|OTTMUSG00000007332	sushi domain containing 1	protein-coding	0.010000	0.368159	
mm_64893.1	chr7	15945963	15946163	-	1	NA	NA	NA	45	NM_133831	68077	Mm.277634	NM_133831	ENSMUSG00000041560	Gltscr2	5330430H08Rik|9430097C02Rik|AU041936|AW536441|PICT-1|R74911	glioma tumor suppressor candidate region gene 2	protein-coding	0.095000	0.572139	
mm_16944.1	chr2	15049087	15049287	-	1	NA	NA	NA	125	NM_001165942	74455	Mm.478923	NM_028950	ENSMUSG00000026707	Nsun6	4933403D21Rik|4933414E04Rik|NOPD1	NOL1/NOP2/Sun domain family member 6	protein-coding	0.045000	0.517413	
mm_19227.1	chr2	84670554	84670754	-	1	NA	NA	NA	54	NM_001033166	72657	Mm.259293	NM_001033166	ENSMUSG00000076437	Selenoh	2700094K13Rik|Selh	selenoprotein H	protein-coding	0.070000	0.601990	
mm_144163.1	chr18	5772601	5772801	+	1	NA	NA	NA	-180264	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	0.040000	0.557214	
mm_53879.1	chr6	3323288	3323488	-	1	NA	NA	NA	34869	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.000000	0.517413	
mm_45614.1	chr5	75835587	75835787	-	1	NA	NA	NA	142741	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.055000	0.532338	
mm_70061.1	chr7	142652110	142652310	-	1	NA	NA	NA	2786	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.020000	0.398010	20(CTTTTTATGCGC,+,0.00)
mm_161518.1	chr15	99248983	99249183	-	1	NA	NA	NA	-2705	NR_045627	73600	Mm.475134	NR_045627	ENSMUSG00000100599	1700120C14Rik	-	RIKEN cDNA 1700120C14 gene	ncRNA	0.015000	0.587065	
mm_66305.1	chr7	38271250	38271450	-	1	NA	NA	NA	-2	NM_025390	66161	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0.075000	0.542289	
mm_159181.1	chr2	111449194	111449394	+	1	NA	NA	NA	152	NM_001011773	257935	Mm.377308	NM_001011773	ENSMUSG00000095586	Olfr1287	MOR248-15	olfactory receptor 1287	protein-coding	0.000000	0.417910	
mm_154116.1	chr19	57178440	57178640	-	1	NA	NA	NA	19091	NM_001103177	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.000000	0.442786	
mm_109546.1	chr12	111698520	111698720	+	1	NA	NA	NA	14333	NM_001324481	70369	Mm.44239	NM_027404	ENSMUSG00000049792	Bag5	1600025G07Rik|4930405J06Rik|Bag-5	BCL2-associated athanogene 5	protein-coding	0.010000	0.552239	
mm_20347.1	chr2	127729804	127730004	-	1	NA	NA	NA	-7	NM_145532	228576	Mm.133036	NM_145532	ENSMUSG00000027377	Mall	BC012256|BENE	mal, T cell differentiation protein-like	protein-coding	0.090000	0.661692	
mm_156386.1	chrX	139792507	139792707	+	1	NA	NA	NA	-8201	NM_016675	12738	Mm.117068	NM_016675	ENSMUSG00000047230	Cldn2	AL022813	claudin 2	protein-coding	0.020000	0.547264	
mm_100285.1	chr11	117809595	117809795	+	1	NA	NA	NA	28	NM_009304	20973	Mm.468228	NM_009304	ENSMUSG00000048277	Syngr2	Clast2|cellugyrin	synaptogyrin 2	protein-coding	0.145000	0.746269	
mm_51757.1	chr6	87777973	87778173	+	1	NA	NA	NA	-63	NM_018762	54368	Mm.12897	NM_018762	ENSMUSG00000030054	Gp9	Cd42|GPIX	glycoprotein 9 (platelet)	protein-coding	0.010000	0.597015	
mm_90736.1	chr10	5338790	5338990	-	1	NA	NA	NA	-144183	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.000000	0.333333	
mm_49510.1	chr6	29859278	29859478	+	1	NA	NA	NA	-218	NM_001171001	74340	Mm.210899	NM_021414	ENSMUSG00000029772	Ahcyl2	4631427C17Rik|AI227036|Adohcyase3|mKIAA0828	S-adenosylhomocysteine hydrolase-like 2	protein-coding	0.005000	0.388060	
mm_134433.1	chr16	18073544	18073744	-	1	NA	NA	NA	7241	NM_001289813	13353	Mm.27155	NM_010047	ENSMUSG00000003531	Dgcr6	-	DiGeorge syndrome critical region gene 6	protein-coding	0.020000	0.557214	
mm_144604.1	chr18	32397488	32397688	+	1	NA	NA	NA	-19304	NR_045403	402767	Mm.385109	NR_045403	ENSMUSG00000097413	A830052D11Rik	-	RIKEN cDNA A830052D11 gene	ncRNA	0.020000	0.562189	
mm_55862.1	chr6	83456400	83456600	-	1	NA	NA	NA	-108	NM_001347313	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.145000	0.810945	
mm_163799.1	chr14	18331059	18331259	+	1	NA	NA	NA	685	NM_009455	22194	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	0.080000	0.676617	
mm_3149.1	chr1	135147521	135147721	+	1	NA	NA	NA	787	NM_026823	68724	Mm.174998	NM_026823	ENSMUSG00000026426	Arl8a	1110033P22Rik|Arl10b|gie2	ADP-ribosylation factor-like 8A	protein-coding	0.045000	0.626866	59(CACCATAAAGGG,-,0.00)
mm_69372.1	chr7	130847363	130847563	-	1	NA	NA	NA	-18261	NM_001346515	101476	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.050000	0.537313	
mm_113056.1	chr13	23695728	23695928	+	1	NA	NA	NA	17	NM_010377	107970	Mm.8048	NM_010377	ENSMUSG00000036211	Hist1h1t	H1.6|H1ft|H1t	histone cluster 1, H1t	protein-coding	0.040000	0.587065	-63(CTCTATATAAGC,-,0.00)
mm_53034.1	chr6	124519872	124520072	+	1	NA	NA	NA	7351	NM_023143	50909	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	0.010000	0.412935	
mm_90444.1	chr10	127658268	127658468	+	1	NA	NA	NA	8335	NM_001122895	17937	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0.020000	0.562189	
mm_58464.1	chr7	3366869	3367069	+	1	NA	NA	NA	-27073	NM_133190	81905	Mm.357990	NM_133190	ENSMUSG00000053395	Cacng8	-	calcium channel, voltage-dependent, gamma subunit 8	protein-coding	0.035000	0.562189	
mm_117294.1	chr13	66932904	66933104	-	1	NA	NA	NA	68	NM_025547	66410	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	0.135000	0.691542	
mm_107838.1	chr12	69296831	69297031	+	1	NA	NA	NA	250	NM_027117	69554	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0.145000	0.726368	
mm_85408.1	chr9	103365677	103365877	-	1	NA	NA	NA	3	NM_175833	321022	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.115000	0.746269	
mm_141162.1	chr17	26509397	26509597	-	1	NA	NA	NA	-1025	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.030000	0.547264	
mm_168955.1	chr12	78350856	78351056	+	1	NA	NA	NA	124301	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.045000	0.537313	
mm_2926.1	chr1	132190326	132190526	+	1	NA	NA	NA	-1010	NM_001311104	213409	Mm.426321	NM_001033250	ENSMUSG00000079330	Lemd1	4930540I23Rik|6430514M23Rik|AI428128|LEMP-1	LEM domain containing 1	protein-coding	0.140000	0.746269	
mm_8074.1	chr1	135585187	135585387	-	1	NA	NA	NA	68	NM_173437	215690	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.135000	0.736318	
mm_55204.1	chr6	52208600	52208800	-	1	NA	NA	NA	-76	NM_010454	15403	Mm.222030	NM_010454	ENSMUSG00000043219	Hoxa6	Hox-1.2	homeobox A6	protein-coding	0.065000	0.527363	
mm_167369.1	chr8	89130844	89131044	+	1	NA	NA	NA	-86782	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.020000	0.527363	
mm_112066.1	chr12	111981012	111981212	-	1	NA	NA	NA	-361	NM_001127685	217874	Mm.134213	NM_001127685	ENSMUSG00000091402	Rd3l	A930011N13	retinal degeneration 3-like	protein-coding	0.025000	0.507463	
mm_35357.1	chr4	32343651	32343851	-	1	NA	NA	NA	-73684	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.025000	0.502488	-34(GCATCTAAAAGG,-,0.00)
mm_43679.1	chr5	138799573	138799773	+	1	NA	NA	NA	-20407	NM_001195128	384244	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0.005000	0.437811	
mm_129486.1	chr15	78773317	78773517	-	1	NA	NA	NA	28	NM_008595	17305	Mm.149235	NM_008595	ENSMUSG00000018169	Mfng	AW546563	MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.030000	0.681592	
mm_21592.1	chr2	164237587	164237787	-	1	NA	NA	NA	654	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.025000	0.487562	
mm_108305.1	chr12	79335311	79335511	+	1	NA	NA	NA	38060	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.020000	0.407960	-15(AGCTTTATAAGA,-,0.00)
mm_66772.1	chr7	46795958	46796158	-	1	NA	NA	NA	-36	NM_008186	14884	Mm.22700	NM_008186	ENSMUSG00000006599	Gtf2h1	62kDa|AW743425|AW822074|BTF2 p62|C77871|p62	general transcription factor II H, polypeptide 1	protein-coding	0.125000	0.716418	
mm_14195.1	chr2	127133918	127134118	+	1	NA	NA	NA	-64	NM_144818	215387	Mm.29786	NM_144818	ENSMUSG00000034906	Ncaph	A730011O11Rik|Brrn1|HCAP-H|mKIAA0074	non-SMC condensin I complex, subunit H	protein-coding	0.100000	0.631841	
mm_109647.1	chr12	112830921	112831121	+	1	NA	NA	NA	-1632	NM_028023	71963	Mm.313185	NM_028023	ENSMUSG00000047832	Cdca4	2410018C03Rik|HEPP|SEI-3	cell division cycle associated 4	protein-coding	0.005000	0.383085	
mm_806.1	chr1	45348856	45349056	+	1	NA	NA	NA	37418	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.005000	0.308458	
mm_9163.1	chr1	170966404	170966604	-	1	NA	NA	NA	9567	NM_001077189	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.010000	0.452736	
mm_56234.1	chr6	90662095	90662295	-	1	NA	NA	NA	42949	NM_001037493	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.005000	0.542289	
mm_159650.1	chr4	146097199	146097399	+	1	NA	NA	NA	-13	NM_001037926	626316	Mm.270762	NM_001037926	ENSMUSG00000066009	Zfp987	Gm13051|OTTMUSG00000010104|OTTMUSG00000010173	zinc finger protein 987	protein-coding	0.015000	0.497512	
mm_123717.1	chr14	70069028	70069228	-	1	NA	NA	NA	-8317	NM_018781	13655	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.020000	0.467662	
mm_3254.1	chr1	136146559	136146759	+	1	NA	NA	NA	15258	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.000000	0.517413	6(CCCCTTAAGGCC,+,0.00)
mm_141818.1	chr17	34606815	34607015	-	1	NA	NA	NA	1054	NM_001163379	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.025000	0.567164	
mm_61338.1	chr7	68279074	68279274	+	1	NA	NA	NA	-2580	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.020000	0.572139	
mm_54190.1	chr6	24275320	24275520	-	1	NA	NA	NA	-107328	NM_019481	55961	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0.005000	0.398010	-84(CTTTTTAAATAC,+,0.00)
mm_88121.1	chr10	69219297	69219497	+	1	NA	NA	NA	6203	NM_001252638	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.000000	0.462687	
mm_46540.1	chr5	105718171	105718371	-	1	NA	NA	NA	17461	NM_178701	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.020000	0.412935	7(CATTTTAAAAGG,-,0.00)
mm_117219.1	chr13	64128422	64128622	-	1	NA	NA	NA	808	NM_001001321	70484	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	0.010000	0.293532	
mm_47108.1	chr5	118477700	118477900	-	1	NA	NA	NA	-82919	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.015000	0.537313	
mm_36964.1	chr4	109200621	109200821	-	1	NA	NA	NA	1551	NM_133885	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.015000	0.358209	
mm_46979.1	chr5	115272405	115272605	-	1	NA	NA	NA	390	NM_001302448	50849	Mm.30051	NM_016698	ENSMUSG00000041740	Rnf10	AA675014|RIE2|mKIAA0262	ring finger protein 10	protein-coding	0.110000	0.681592	
mm_61589.1	chr7	80024799	80024999	+	1	NA	NA	NA	85	NM_001146000	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.045000	0.636816	
mm_154821.1	chrX	16619657	16619857	+	1	NA	NA	NA	59	NM_173740	17161	Mm.21108	NM_173740	ENSMUSG00000025037	Maoa	1110061B18Rik|AA407771	monoamine oxidase A	protein-coding	0.060000	0.587065	45(CCTTTTAAACCC,+,0.00)
mm_84876.1	chr9	79718540	79718740	-	1	NA	NA	NA	82	NM_001290308	12816	Mm.3819	NM_007730	ENSMUSG00000032332	Col12a1	-	collagen, type XII, alpha 1	protein-coding	0.095000	0.646766	
mm_125395.1	chr15	41447250	41447450	+	1	NA	NA	NA	-132	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.135000	0.731343	
mm_134783.1	chr16	23988441	23988641	-	1	NA	NA	NA	71	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.075000	0.532338	
mm_75035.1	chr8	32421045	32421245	-	1	NA	NA	NA	269250	NR_046039	666589	Mm.367675	NR_046039		Gm8179	EG666589	predicted gene 8179	ncRNA	0.000000	0.432836	
mm_125939.1	chr15	76247883	76248083	+	1	NA	NA	NA	-208	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.000000	0.597015	
mm_130676.1	chr15	100675309	100675509	-	1	NA	NA	NA	-5909	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.025000	0.507463	
mm_49584.1	chr6	30642806	30643006	+	1	NA	NA	NA	3688	NM_025350	109697	Mm.25377	NM_025350	ENSMUSG00000054446	Cpa1	0910001L12Rik|Cpa	carboxypeptidase A1, pancreatic	protein-coding	0.025000	0.512438	
mm_118589.1	chr14	20640935	20641135	+	1	NA	NA	NA	15505	NM_021508	59011	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0.125000	0.631841	
mm_103311.1	chr11	73137185	73137385	-	1	NA	NA	NA	1009	NM_010353	14841	Mm.42045	NM_010353	ENSMUSG00000050107	Gsg2	Haspin	germ cell associated 2, haspin	protein-coding	0.025000	0.482587	
mm_56077.1	chr6	87188137	87188337	-	1	NA	NA	NA	83491	NM_001167937	52372	Mm.282851	NM_001167937	ENSMUSG00000090891	D6Ertd527e	AU043841	DNA segment, Chr 6, ERATO Doi 527, expressed	protein-coding	0.035000	0.507463	
mm_23789.1	chr3	79531917	79532117	+	1	NA	NA	NA	35662	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.015000	0.477612	
mm_132343.1	chr16	33863538	33863738	+	1	NA	NA	NA	33973	NM_001145884	16419	Mm.6424	NM_010580	ENSMUSG00000022817	Itgb5	AA475909|AI874634|ESTM23|[b]-5|[b]5|[b]5A|[b]5B|beta-5|beta5	integrin beta 5	protein-coding	0.015000	0.452736	
mm_55616.1	chr6	72128254	72128454	-	1	NA	NA	NA	-5157	NR_045165	71265	Mm.442035	NR_045163	ENSMUSG00000108709	4933431G14Rik	4930565C19Rik	RIKEN cDNA 4933431G14 gene	ncRNA	0.030000	0.547264	
mm_155068.1	chrX	42505152	42505352	+	1	NA	NA	NA	-70	NM_001313691	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	0.015000	0.402985	
mm_38738.1	chr4	145246064	145246264	-	1	NA	NA	NA	706	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.035000	0.532338	
mm_41232.1	chr5	88750569	88750769	+	1	NA	NA	NA	-14344	NM_007832	13178	Mm.298892	NM_007832	ENSMUSG00000029366	Dck	-	deoxycytidine kinase	protein-coding	0.010000	0.373134	
mm_113689.1	chr13	42898059	42898259	+	1	NA	NA	NA	31912	NM_001302636	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.005000	0.363184	
mm_88156.1	chr10	69574571	69574771	+	1	NA	NA	NA	40963	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.005000	0.422886	
mm_28356.1	chr3	89764338	89764538	-	1	NA	NA	NA	194	NM_009602	11444	Mm.35088	NM_009602	ENSMUSG00000027950	Chrnb2	Acrb-2|Acrb2|C030030P04Rik|[b]2-nAchR	cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal)	protein-coding	0.090000	0.676617	
mm_118053.1	chr13	101748444	101748644	-	1	NA	NA	NA	19673	NM_001077495	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.010000	0.328358	
mm_157418.1	chrX	38564034	38564234	-	1	NA	NA	NA	12062	NM_028288	72584	Mm.327675	NM_028288	ENSMUSG00000031095	Cul4b	2700050M05Rik|AA409770|CUL-4B|mKIAA0695	cullin 4B	protein-coding	0.015000	0.497512	
mm_156093.1	chrX	111944303	111944503	+	1	NA	NA	NA	-149117	NM_031382	83556	Mm.190608	NM_031382	ENSMUSG00000034555	Tex16	OTTMUSG00000018437	testis expressed gene 16	protein-coding	0.000000	0.378109	
mm_164027.1	chr14	76610469	76610669	-	1	NA	NA	NA	-53680	NR_027699	72661	Mm.320384	NM_001160326	ENSMUSG00000052584	Serp2	2810032E02Rik	stress-associated endoplasmic reticulum protein family member 2	protein-coding	0.020000	0.537313	
mm_113241.1	chr13	27345570	27345770	+	1	NA	NA	NA	-3	NM_010088	13529	Mm.291450	NM_010088	ENSMUSG00000018259	Prl8a2	D/tPRP|DPRP|Dtprp|Ghd11|mdPRP	prolactin family 8, subfamily a, member 2	protein-coding	0.005000	0.452736	-30(AACTATATAGGG,-,0.00)
mm_138463.1	chr17	35158972	35159172	+	1	NA	NA	NA	5805	NM_001199044	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.010000	0.616915	
mm_93226.1	chr10	95267057	95267257	-	1	NA	NA	NA	56552	NM_001330138	12905	Mm.473739	NM_009950	ENSMUSG00000045867	Cradd	RAIDD	CASP2 and RIPK1 domain containing adaptor with death domain	protein-coding	0.010000	0.562189	77(GACTTTTAAAGT,-,0.00),78(ACTTTTAAAGTA,+,0.00)
mm_118340.1	chr13	114456484	114456684	-	1	NA	NA	NA	2367	NM_001301373	14313	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	0.030000	0.592040	
mm_19819.1	chr2	110791131	110791331	-	1	NA	NA	NA	69737	NM_172979	269328	Mm.32566	NM_172979	ENSMUSG00000050808	Muc15	4732460E09|D730046L02Rik|MUC-15	mucin 15	protein-coding	0.000000	0.298507	
mm_118205.1	chr13	109822334	109822534	-	1	NA	NA	NA	-81375	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.030000	0.542289	
mm_80563.1	chr9	83664865	83665065	+	1	NA	NA	NA	-26510	NR_046066	100039222	Mm.405596	NR_046066	ENSMUSG00000100155	Gm2109	-	predicted gene 2109	ncRNA	0.025000	0.412935	
mm_107929.1	chr12	71137096	71137296	+	1	NA	NA	NA	348	NM_001163378	76967	Mm.87290	NM_029818	ENSMUSG00000034601	2700049A03Rik	Ta3|Talpid3|mKIAA0586	RIKEN cDNA 2700049A03 gene	protein-coding	0.085000	0.572139	
mm_144762.1	chr18	35771567	35771767	+	1	NA	NA	NA	108	NM_019912	56550	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0.120000	0.751244	
mm_93921.1	chr10	127070178	127070378	-	1	NA	NA	NA	-17	NM_025982	67125	Mm.35650	NM_025982	ENSMUSG00000006736	Tspan31	2700085A14Rik|AW742554|Sas	tetraspanin 31	protein-coding	0.040000	0.547264	
mm_54597.1	chr6	38299128	38299328	-	1	NA	NA	NA	31	NM_172467	209032	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	0.120000	0.746269	
mm_79459.1	chr9	56418320	56418520	+	1	NA	NA	NA	-370	NM_172924	244895	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	0.040000	0.487562	69(CCTCTAAGAGTC,+,0.00)
mm_145884.1	chr18	65580289	65580489	+	1	NA	NA	NA	159	NM_207255	328977	Mm.286232	NM_207255	ENSMUSG00000042439	Zfp532	C530030I18Rik|Znf532|mKIAA1629	zinc finger protein 532	protein-coding	0.020000	0.477612	
mm_29070.1	chr3	103808973	103809173	-	1	NA	NA	NA	314	NM_133865	140917	Mm.374850	NM_133865	ENSMUSG00000027845	Dclre1b	AI452214|Apollo|SNMIB|mSNM1B	DNA cross-link repair 1B	protein-coding	0.075000	0.606965	
mm_10810.1	chr2	24349866	24350066	+	1	NA	NA	NA	4595	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.000000	0.462687	
mm_27313.1	chr3	50366565	50366765	-	1	NA	NA	NA	76948	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.283582	
mm_39406.1	chr5	14514910	14515110	+	1	NA	NA	NA	92	NM_001110796	26875	Mm.146275	NM_011995	ENSMUSG00000061601	Pclo	Acz|Pico	piccolo (presynaptic cytomatrix protein)	protein-coding	0.110000	0.756219	
mm_55958.1	chr6	85451173	85451373	-	1	NA	NA	NA	29	NM_001163427	73327	Mm.379221	NM_028505	ENSMUSG00000030008	Pradc1	1700040I03Rik|Pap21	protease-associated domain containing 1	protein-coding	0.125000	0.731343	
mm_91227.1	chr10	22293248	22293448	-	1	NA	NA	NA	-13372	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.010000	0.338308	31(GGGCATATAAAG,-,0.00)
mm_10212.1	chr2	5844940	5845140	+	1	NA	NA	NA	6	NM_016918	53893	Mm.251904	NM_016918	ENSMUSG00000025817	Nudt5	-	nudix (nucleoside diphosphate linked moiety X)-type motif 5	protein-coding	0.080000	0.587065	-41(CCGTCTTAAAGA,-,0.00)
mm_49189.1	chr6	15185517	15185717	+	1	NA	NA	NA	111	NM_001286607	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.030000	0.452736	82(CTTTTTAGACTG,+,0.00)
mm_51619.1	chr6	85298393	85298593	+	1	NA	NA	NA	34929	NM_178639	94282	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	0.010000	0.402985	44(GCCTTTAAGGTG,+,0.00)
mm_148468.1	chr19	4097247	4097447	+	1	NA	NA	NA	-4	NM_026373	52004	Mm.29609	NM_026373	ENSMUSG00000024856	Cdk2ap2	5830466O21Rik|D19Ertd144e|Doc-1r	CDK2-associated protein 2	protein-coding	0.095000	0.661692	
mm_142820.1	chr17	51752503	51752703	-	1	NA	NA	NA	59451	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.010000	0.482587	
mm_69948.1	chr7	142267698	142267898	-	1	NA	NA	NA	6565	NM_001199309	100043627	Mm.388589	NM_001199309	ENSMUSG00000056885	Gm4559	-	predicted gene 4559	protein-coding	0.065000	0.512438	
mm_54129.1	chr6	18813798	18813998	-	1	NA	NA	NA	-34737	NM_133939	76522	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	0.010000	0.457711	
mm_139921.1	chr17	70986213	70986413	+	1	NA	NA	NA	4203	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.015000	0.422886	
mm_151817.1	chr19	5503684	5503884	-	1	NA	NA	NA	3	NM_023781	75555	Mm.440432	NM_023781	ENSMUSG00000100937	1700020D05Rik	mage-g2	RIKEN cDNA 1700020D05 gene	protein-coding	0.075000	0.651741	
mm_170831.1	chr2	176927735	176927935	-	1	NA	NA	NA	-22	NM_001305133	102639598	Mm.379980	NM_029813	ENSMUSG00000074527	Gm14296	-	predicted gene 14296	protein-coding	0.005000	0.492537	
mm_5011.1	chr1	192812077	192812277	+	1	NA	NA	NA	-29528	NR_040468	73455	Mm.414869	NR_040468		1700065J18Rik	-	RIKEN cDNA 1700065J18 gene	ncRNA	0.000000	0.402985	
mm_106064.1	chr11	116132479	116132679	-	1	NA	NA	NA	-1451	NM_178802	338364	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0.025000	0.587065	
mm_122067.1	chr14	30491355	30491555	-	1	NA	NA	NA	-299	NM_028981	12289	Mm.9772	NM_028981	ENSMUSG00000015968	Cacna1d	8430418G19Rik|C79217|Cach3|Cacn4|Cacnl1a2|Cav1.3|Cchl1a|Cchl1a2|D-LTCC	calcium channel, voltage-dependent, L type, alpha 1D subunit	protein-coding	0.025000	0.512438	
mm_29695.1	chr3	123114265	123114465	-	1	NA	NA	NA	-79378	NM_021503	59006	Mm.141157	NM_021503	ENSMUSG00000028116	Myoz2	1110012I24Rik|Fatz-2|Myozl2	myozenin 2	protein-coding	0.035000	0.502488	
mm_47162.1	chr5	120711553	120711753	-	1	NA	NA	NA	16	NM_008052	14357	Mm.1645	NM_008052	ENSMUSG00000029603	Dtx1	Fxit1|mKIAA4160	deltex 1, E3 ubiquitin ligase	protein-coding	0.135000	0.731343	
mm_7134.1	chr1	91052943	91053143	-	1	NA	NA	NA	-401	NM_001310732	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.050000	0.686567	
mm_138667.1	chr17	35874998	35875198	+	1	NA	NA	NA	-4680	NM_026987	69192	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	0.015000	0.527363	
mm_129522.1	chr15	79163764	79163964	-	1	NA	NA	NA	626	NM_011437	20665	Mm.276739	NM_011437	ENSMUSG00000033006	Sox10	Dom|Sox21|gt	SRY (sex determining region Y)-box 10	protein-coding	0.100000	0.721393	
mm_28760.1	chr3	95882086	95882286	-	1	NA	NA	NA	42	NM_001033302	229599	Mm.331218	NM_001033302	ENSMUSG00000038550	Ciart	Chrono|Gm129	circadian associated repressor of transcription	protein-coding	0.080000	0.646766	
mm_147881.1	chr18	64660868	64661068	-	1	NA	NA	NA	32	NM_001001488	54670	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0.100000	0.726368	
mm_40894.1	chr5	75153432	75153632	+	1	NA	NA	NA	596	NM_001347719	18595	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.045000	0.606965	
mm_54157.1	chr6	23085044	23085244	-	1	NA	NA	NA	47842	NM_013930	30956	Mm.18651	NM_013930	ENSMUSG00000029695	Aass	LKR|LKR/SDH|LOR|LOR/SDH|Lorsdh|SDH	aminoadipate-semialdehyde synthase	protein-coding	0.010000	0.522388	
mm_651.1	chr1	40429103	40429303	+	1	NA	NA	NA	-367	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.010000	0.472637	
mm_41092.1	chr5	87694474	87694674	+	1	NA	NA	NA	4851	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.010000	0.482587	
mm_118663.1	chr14	21832800	21833000	+	1	NA	NA	NA	1339	NM_011695	22334	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0.015000	0.388060	68(CCTTTTAAACAT,+,0.00)
mm_152570.1	chr19	11589920	11590120	-	1	NA	NA	NA	14784	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.005000	0.422886	
mm_25592.1	chr3	116894795	116894995	+	1	NA	NA	NA	33215	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.015000	0.472637	
mm_11398.1	chr2	31470199	31470399	+	1	NA	NA	NA	-9	NR_002687	432466	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.060000	0.671642	
mm_26862.1	chr3	15332174	15332374	-	1	NA	NA	NA	28	NM_001076679	751864	Mm.431296	NM_001076679	ENSMUSG00000078783	Gm9733	-	predicted gene 9733	protein-coding	0.015000	0.437811	
mm_15196.1	chr2	154205387	154205587	+	1	NA	NA	NA	5107	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.010000	0.537313	
mm_103423.1	chr11	75594674	75594874	-	1	NA	NA	NA	5457	NR_110477	654359	Mm.439961	NR_110477		Gm12338	OTTMUSG00000006216	cytochrome c oxidase, subunit VIIc pseudogene	pseudo	0.020000	0.517413	
mm_28966.1	chr3	100969582	100969782	-	1	NA	NA	NA	-19	NM_001013026	74044	Mm.270961	NM_001013026	ENSMUSG00000033222	Ttf2	4632434F22Rik|8030447N19|AV218430	transcription termination factor, RNA polymerase II	protein-coding	0.065000	0.616915	
mm_61050.1	chr7	49909993	49910193	+	1	NA	NA	NA	-206	NM_001146013	104245	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	0.045000	0.527363	84(CCCTTTAAAATC,+,0.00),85(CCTTTAAAATCC,+,0.00)
mm_109803.1	chr12	3309789	3309989	-	1	NA	NA	NA	80	NM_016676	19325	Mm.378993	NM_016676	ENSMUSG00000020671	Rab10	AW107754	RAB10, member RAS oncogene family	protein-coding	0.120000	0.696517	
mm_18850.1	chr2	75659696	75659896	-	1	NA	NA	NA	506	NR_033513	627828	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	0.145000	0.746269	
mm_79571.1	chr9	58134194	58134394	+	1	NA	NA	NA	219	NM_001162476	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.015000	0.557214	
mm_78296.1	chr9	22411446	22411646	+	1	NA	NA	NA	-31	NM_026739	68283	Mm.280669	NM_026739	ENSMUSG00000036411	9530077C05Rik	1110003N12Rik|Kiaa0895|mKIAA0895	RIKEN cDNA 9530077C05 gene	protein-coding	0.080000	0.631841	
mm_11776.1	chr2	38931891	38932091	+	1	NA	NA	NA	11	NM_172854	241327	Mm.103491	NM_172854	ENSMUSG00000046618	Olfml2a	4932431K08Rik|mFLJ00237	olfactomedin-like 2A	protein-coding	0.075000	0.716418	
mm_53513.1	chr6	136016665	136016865	+	1	NA	NA	NA	156746	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.020000	0.522388	
mm_96332.1	chr11	65270053	65270253	+	1	NA	NA	NA	-164	NM_146386	214384	Mm.32257	NM_145136	ENSMUSG00000020542	Myocd	BSAC2A|Srfcp	myocardin	protein-coding	0.070000	0.641791	
mm_5085.1	chr1	4496310	4496510	-	1	NA	NA	NA	944	NM_001289464	20671	Mm.279103	NM_011441	ENSMUSG00000025902	Sox17	-	SRY (sex determining region Y)-box 17	protein-coding	0.035000	0.512438	
mm_130430.1	chr15	98162562	98162762	-	1	NA	NA	NA	2916	NM_001170711	78541	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0.005000	0.437811	-34(GGATATAAAAAG,-,0.00),28(GGTTATAAAAGC,-,0.00)
mm_128757.1	chr15	64923049	64923249	-	1	NA	NA	NA	-853	NM_009623	11514	Mm.1425	NM_009623	ENSMUSG00000022376	Adcy8	AC8|AW060868	adenylate cyclase 8	protein-coding	0.045000	0.587065	
mm_16973.1	chr2	17731481	17731681	-	1	NA	NA	NA	-513	NM_028757	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0.030000	0.552239	
mm_118214.1	chr13	110279987	110280187	-	1	NA	NA	NA	119	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding	0.080000	0.636816	
mm_81710.1	chr9	111311683	111311883	+	1	NA	NA	NA	44	NM_001164659	320429	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	0.185000	0.751244	
mm_5104.1	chr1	5070210	5070410	-	1	NA	NA	NA	-25	NM_001177795	58175	Mm.103771	NM_021374	ENSMUSG00000002459	Rgs20	2900073E09Rik|Rgsz1	regulator of G-protein signaling 20	protein-coding	0.005000	0.457711	
mm_51718.1	chr6	86850801	86851001	+	1	NA	NA	NA	1384	NM_001040106	269774	Mm.221038	NM_177762	ENSMUSG00000057230	Aak1	5530400K14Rik|9630042K20|AU067724|AU067726|BC028270|C79663|D6Ertd245e|R75501|mKIAA1048	AP2 associated kinase 1	protein-coding	0.015000	0.437811	
mm_26754.1	chr3	7954802	7955002	-	1	NA	NA	NA	-15	NR_040587	75476	Mm.491752	NR_040587	ENSMUSG00000100010	1700010I02Rik	-	RIKEN cDNA 1700010I02 gene	ncRNA	0.005000	0.368159	
mm_38868.1	chr4	149571207	149571407	-	1	NA	NA	NA	-15161	NM_001290989	65945	Mm.38993	NM_023051	ENSMUSG00000039953	Clstn1	1810034E21Rik|Cst-1|Cstn1	calsyntenin 1	protein-coding	0.010000	0.527363	
mm_62766.1	chr7	112238433	112238633	+	1	NA	NA	NA	12697	NM_001193305	320878	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0.005000	0.517413	
mm_58207.1	chr6	143925888	143926088	-	1	NA	NA	NA	21118	NM_001347506	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.015000	0.472637	
mm_115721.1	chr13	16003899	16004099	-	1	NA	NA	NA	-7852	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.353234	
mm_59967.1	chr7	30428360	30428560	+	1	NA	NA	NA	5156	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.010000	0.492537	
mm_135240.1	chr16	36990178	36990378	-	1	NA	NA	NA	-11142	NM_001037321	207215	Mm.211899	NM_001037321	ENSMUSG00000047746	Fbxo40	9830003A13Rik|mKIAA1195	F-box protein 40	protein-coding	0.040000	0.487562	
mm_4016.1	chr1	165653783	165653983	+	1	NA	NA	NA	-19342	NM_001083897	68481	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.020000	0.497512	-66(GCTTTAAGGCGC,+,0.00)
mm_47398.1	chr5	123046912	123047112	-	1	NA	NA	NA	4	NM_001347456	74890	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0.000000	0.542289	
mm_46117.1	chr5	92434961	92435161	-	1	NA	NA	NA	138	NM_183392	269113	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.095000	0.666667	
mm_8012.1	chr1	134846674	134846874	-	1	NA	NA	NA	-43053	NR_015606	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.010000	0.552239	
mm_91813.1	chr10	54061613	54061813	-	1	NA	NA	NA	14083	NM_008548	17155	Mm.117294	NM_008548	ENSMUSG00000003746	Man1a	Man1a1|PCR1	mannosidase 1, alpha	protein-coding	0.005000	0.502488	
mm_17087.1	chr2	22988714	22988914	-	1	NA	NA	NA	51427	NM_001077192	11308	Mm.205647	NM_007380	ENSMUSG00000058835	Abi1	E3B1|NAP1|Ssh3bp1|abi-1	abl-interactor 1	protein-coding	0.005000	0.393035	
mm_156607.1	chrX	153237727	153237927	+	1	NA	NA	NA	-218	NM_173780	245671	Mm.260751	NM_173780	ENSMUSG00000041649	Klf8	A830097P10Rik|BKLF3|ZNF74	Kruppel-like factor 8	protein-coding	0.040000	0.557214	
mm_119644.1	chr14	51984432	51984632	+	1	NA	NA	NA	-301	NM_001145921	268739	Mm.9239	NM_198249	ENSMUSG00000004562	Arhgef40	E130112L23Rik|Gm669|Solo	Rho guanine nucleotide exchange factor (GEF) 40	protein-coding	0.040000	0.601990	
mm_96132.1	chr11	60878094	60878294	+	1	NA	NA	NA	844	NM_173453	216821	Mm.28063	NM_173453	ENSMUSG00000043284	Tmem11	5730466P16Rik|AA409091	transmembrane protein 11	protein-coding	0.050000	0.507463	
mm_36338.1	chr4	72200643	72200843	-	1	NA	NA	NA	150	NM_011599	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.135000	0.721393	
mm_65522.1	chr7	25772107	25772307	-	1	NA	NA	NA	16526	NM_001190974	26362	Mm.4128	NM_009465	ENSMUSG00000002602	Axl	AI323647|Ark|Tyro7|Ufo	AXL receptor tyrosine kinase	protein-coding	0.010000	0.532338	
mm_68967.1	chr7	126584477	126584677	-	1	NA	NA	NA	-431	NM_138310	171504	Mm.170665	NM_138310	ENSMUSG00000042759	Apobr	Apob-48r|Apob48r	apolipoprotein B receptor	protein-coding	0.015000	0.487562	
mm_24733.1	chr3	95283033	95283233	+	1	NA	NA	NA	198	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.060000	0.611940	
mm_58709.1	chr7	12977767	12977967	+	1	NA	NA	NA	19	NM_001168561	269870	Mm.62083	NM_175558	ENSMUSG00000033961	Zfp446	A630035I11Rik|A930031C22|AA120513|AV306632	zinc finger protein 446	protein-coding	0.065000	0.601990	
mm_78326.1	chr9	25186606	25186806	+	1	NA	NA	NA	-34925	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.010000	0.507463	
mm_76396.1	chr8	84844373	84844573	-	1	NA	NA	NA	2458	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.005000	0.517413	
mm_10644.1	chr2	20552003	20552203	+	1	NA	NA	NA	32590	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.000000	0.383085	
mm_142225.1	chr17	37480625	37480825	-	1	NA	NA	NA	2804	NM_008204	14990	Mm.329041	NM_008204	ENSMUSG00000016283	H2-M2	H-2M2|Thy19.4	histocompatibility 2, M region locus 2	protein-coding	0.000000	0.373134	
mm_148035.1	chr18	70244292	70244492	-	1	NA	NA	NA	192	NM_029346	75577	Mm.58214	NM_029346	ENSMUSG00000024512	Dynap	2310002L13Rik	dynactin associated protein	protein-coding	0.030000	0.482587	
mm_162960.1	chr11	5229701	5229901	-	1	NA	NA	NA	-24797	NR_037240	100526548		NR_037240	ENSMUSG00000093169	Mir3079	mmu-mir-3079	microRNA 3079	ncRNA	0.010000	0.532338	
mm_140240.1	chr17	84126305	84126505	+	1	NA	NA	NA	47745	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.015000	0.557214	
mm_164018.1	chr14	74558027	74558227	+	1	NA	NA	NA	-82713	NM_172812	15558	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	0.005000	0.462687	
mm_117475.1	chr13	76271810	76272010	-	1	NA	NA	NA	-113051	NM_030174	78771	Mm.316249	NM_030174	ENSMUSG00000021596	Mctp1	2810465F10Rik	multiple C2 domains, transmembrane 1	protein-coding	0.010000	0.417910	50(GGCTTTTTAAGA,-,0.00)
mm_164878.1	chr18	58210001	58210201	-	1	NA	NA	NA	-175	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.100000	0.646766	
mm_98880.1	chr11	97806713	97806913	+	1	NA	NA	NA	7141	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.025000	0.492537	
mm_151097.1	chr19	47854904	47855104	+	1	NA	NA	NA	31	NM_010362	14873	Mm.378931	NM_010362	ENSMUSG00000025068	Gsto1	AA407097|AI194287|AU018802|Gsto-1|Gstx|Spg-r|p28	glutathione S-transferase omega 1	protein-coding	0.105000	0.661692	-65(TCCCTTTAAAGG,-,0.00),-64(CCCTTTAAAGGC,+,0.00),-64(CCCTTTAAAGGC,-,0.00),-63(CCTTTAAAGGCG,+,0.00)
mm_136404.1	chr16	93604691	93604891	-	1	NA	NA	NA	-976	NM_145482	224440	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	0.040000	0.487562	
mm_90163.1	chr10	119240224	119240424	+	1	NA	NA	NA	-269	NM_027994	71902	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	0.090000	0.592040	
mm_21126.1	chr2	154015875	154016075	-	1	NA	NA	NA	7699	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.000000	0.452736	
mm_14772.1	chr2	145786193	145786393	+	1	NA	NA	NA	177	NM_028724	74030	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.025000	0.502488	
mm_10051.1	chr1	193201306	193201506	-	1	NA	NA	NA	140	NM_153137	215243	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	0.015000	0.472637	
mm_146286.1	chr18	78062731	78062931	+	1	NA	NA	NA	-5563	NM_001101038	620235	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0.020000	0.462687	
mm_80899.1	chr9	100022211	100022411	+	1	NA	NA	NA	11	NR_040763	108970	Mm.390215	NR_040763	ENSMUSG00000101584	4930519F24Rik	-	RIKEN cDNA 4930519F24 gene	ncRNA	0.010000	0.353234	
mm_64635.1	chr7	3714183	3714383	-	1	NA	NA	NA	6099	NM_011095	18733	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	0.000000	0.532338	
mm_510.1	chr1	37246647	37246847	+	1	NA	NA	NA	27542	NM_009918	12790	Mm.214224	NM_009918	ENSMUSG00000026114	Cnga3	CNG3	cyclic nucleotide gated channel alpha 3	protein-coding	0.010000	0.537313	
mm_12481.1	chr2	71529703	71529903	+	1	NA	NA	NA	358	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.035000	0.467662	
mm_165609.1	chr3	52069911	52070111	-	1	NA	NA	NA	34995	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.050000	0.587065	
mm_169325.1	chr14	11561165	11561365	+	1	NA	NA	NA	7712	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.015000	0.492537	
mm_83404.1	chr9	44767715	44767915	-	1	NA	NA	NA	-7	NM_145985	213827	Mm.371682	NM_145985	ENSMUSG00000032096	Arcn1	4632432M07Rik|nur17	archain 1	protein-coding	0.095000	0.701493	
mm_133596.1	chr16	91464927	91465127	+	1	NA	NA	NA	-77	NR_077219	100503120	Mm.387130	NR_077219	ENSMUSG00000084866	A930006K02Rik	-	RIKEN cDNA A930006K02 gene	ncRNA	0.055000	0.621891	
mm_130909.1	chr15	102516731	102516931	-	1	NA	NA	NA	173	NM_001163643	26404	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0.075000	0.711443	
mm_50226.1	chr6	42350632	42350832	+	1	NA	NA	NA	904	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.045000	0.616915	
mm_52731.1	chr6	120364366	120364566	+	1	NA	NA	NA	-97	NR_045558	67200	Mm.45767	NM_026028	ENSMUSG00000030177	Ccdc77	2400002C23Rik|2700091N06Rik|AV168274	coiled-coil domain containing 77	protein-coding	0.075000	0.597015	
mm_83954.1	chr9	56928050	56928250	-	1	NA	NA	NA	221	NM_175483	235406	Mm.191459	NM_175483	ENSMUSG00000032733	Snx33	E130307J07Rik|Sh3px3	sorting nexin 33	protein-coding	0.070000	0.641791	
mm_66952.1	chr7	62209423	62209623	-	1	NA	NA	NA	-124213	NR_049204	100885843		NR_049204	ENSMUSG00000095154	Mir344i	Gm26031|mir-344i|mmu-mir-344i	microRNA 344i	ncRNA	0.025000	0.522388	
mm_94746.1	chr11	21102418	21102618	+	1	NA	NA	NA	11194	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.020000	0.383085	-12(GCTCTTAAACCG,+,0.00)
mm_73413.1	chr8	106052990	106053190	+	1	NA	NA	NA	-6513	NM_010901	18021	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.015000	0.477612	
mm_45073.1	chr5	43868593	43868793	-	1	NA	NA	NA	-116	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.005000	0.497512	
mm_62087.1	chr7	93079792	93079992	+	1	NA	NA	NA	13	NM_021427	58238	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.085000	0.691542	-97(CCCTTTATACCC,+,0.00)
mm_103219.1	chr11	70655126	70655326	-	1	NA	NA	NA	-576	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.075000	0.567164	
mm_130938.1	chr15	103216173	103216373	-	1	NA	NA	NA	-921	NM_001110216	12419	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0.005000	0.537313	-28(TACTATAAAAGG,-,0.00)
mm_12084.1	chr2	60208307	60208507	+	1	NA	NA	NA	-1529	NM_020575	57438	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.020000	0.457711	
mm_123184.1	chr14	57826054	57826254	-	1	NA	NA	NA	9	NM_198605	219114	Mm.30173	NM_198605	ENSMUSG00000021965	Ska3	F630043A04Rik	spindle and kinetochore associated complex subunit 3	protein-coding	0.085000	0.631841	
mm_68790.1	chr7	123358916	123359116	-	1	NA	NA	NA	10899	NM_001122643	70497	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.005000	0.278607	80(TTGTTTAAAAGG,-,0.00)
mm_8970.1	chr1	165227493	165227693	-	1	NA	NA	NA	9365	NM_145513	226591	Mm.21520	NM_145513	ENSMUSG00000040843	Tiprl	1810011K17Rik	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	protein-coding	0.020000	0.318408	
mm_15983.1	chr2	166805549	166805749	+	1	NA	NA	NA	68	NM_001085495	99371	Mm.297192	NM_001085495	ENSMUSG00000074582	Arfgef2	AI463430|AW493672|BIG2|E230011G24Rik	ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited)	protein-coding	0.150000	0.766169	
mm_106840.1	chr12	8006774	8006974	+	1	NA	NA	NA	29197	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.412935	
mm_89088.1	chr10	83722859	83723059	+	1	NA	NA	NA	94	NM_001145198	69784	Mm.271188	NM_001145198	ENSMUSG00000087651	1500009L16Rik	2700050C19Rik|OCC-1	RIKEN cDNA 1500009L16 gene	protein-coding	0.120000	0.741294	
mm_140065.1	chr17	74769966	74770166	+	1	NA	NA	NA	52316	NM_152817	74196	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0.020000	0.447761	
mm_151983.1	chr19	5841237	5841437	-	1	NA	NA	NA	4141	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.005000	0.432836	
mm_134232.1	chr16	11461533	11461733	-	1	NA	NA	NA	55985	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.000000	0.457711	
mm_83416.1	chr9	44881200	44881400	-	1	NA	NA	NA	-26	NM_001081049	214162	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	0.130000	0.776119	
mm_139436.1	chr17	53628306	53628506	+	1	NA	NA	NA	44280	NM_001190846	18519	Mm.255025	NM_020005	ENSMUSG00000000708	Kat2b	A930006P13Rik|AI461839|AW536563|Pcaf|p/CAF	K(lysine) acetyltransferase 2B	protein-coding	0.010000	0.427861	
mm_28606.1	chr3	94587964	94588164	-	1	NA	NA	NA	-5348	NM_029721	76742	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.015000	0.482587	
mm_79390.1	chr9	54863596	54863796	+	1	NA	NA	NA	-59	NM_022655	64602	Mm.208991	NM_022655	ENSMUSG00000032293	Ireb2	D9Ertd85e|Irp2	iron responsive element binding protein 2	protein-coding	0.120000	0.681592	
mm_34945.1	chr4	155892161	155892361	+	1	NA	NA	NA	386	NM_207223	140500	Mm.219591	NM_207223	ENSMUSG00000029033	Acap3	Centb5|Kiaa1716-hp|mKIAA1716	ArfGAP with coiled-coil, ankyrin repeat and PH domains 3	protein-coding	0.170000	0.800995	
mm_167914.1	chrX	96455404	96455604	+	1	NA	NA	NA	68	NM_010417	15203	Mm.277092	NM_010417	ENSMUSG00000031209	Heph	C130006F04Rik|Cpl|mKIAA0698|sla	hephaestin	protein-coding	0.010000	0.507463	
mm_106894.1	chr12	8012417	8012617	+	1	NA	NA	NA	34840	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.020000	0.447761	
mm_8671.1	chr1	156674180	156674380	-	1	NA	NA	NA	59	NM_023141	30935	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.090000	0.701493	
mm_165304.1	chr2	94810519	94810719	+	1	NA	NA	NA	-372433	NM_001305258	11800	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0.000000	0.502488	-36(CACTATAAAAGG,-,0.00)
mm_131520.1	chr16	17619264	17619464	+	1	NA	NA	NA	10	NM_001164609	77626	Mm.34659	NM_029945	ENSMUSG00000005899	Smpd4	4122402O22Rik|mKIAA1418	sphingomyelin phosphodiesterase 4	protein-coding	0.090000	0.587065	
mm_6384.1	chr1	72849020	72849220	-	1	NA	NA	NA	23733	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.020000	0.582090	
mm_126592.1	chr15	82351672	82351872	+	1	NA	NA	NA	2519	NM_025987	67130	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	0.015000	0.547264	-75(CCCCAGATAAGG,-,0.00),-34(TCCCTTAAAAAG,-,0.00),-32(CCTTAAAAAGGG,+,0.00)
mm_74094.1	chr8	122570140	122570340	+	1	NA	NA	NA	2225	NM_026014	67177	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0.050000	0.587065	
mm_96056.1	chr11	59566232	59566432	+	1	NA	NA	NA	5406	NM_001011789	257962	Mm.377316	NM_001011789	ENSMUSG00000059610	Olfr222	MOR256-45P	olfactory receptor 222	protein-coding	0.025000	0.557214	
mm_26909.1	chr3	19644262	19644462	-	1	NA	NA	NA	-98	NM_001081281	381485	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0.005000	0.517413	-35(GTCCATATAAGC,-,0.00)
mm_55856.1	chr6	83452693	83452893	-	1	NA	NA	NA	3599	NM_001347313	194388	Mm.211030	NM_183138	ENSMUSG00000034832	Tet3	B430006D22Rik|BC037432|D230004J03Rik	tet methylcytosine dioxygenase 3	protein-coding	0.005000	0.442786	
mm_168837.1	chr12	23158079	23158279	+	1	NA	NA	NA	-147936	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA	0.045000	0.537313	
mm_33757.1	chr4	134343429	134343629	+	1	NA	NA	NA	63	NM_001346578	230810	Mm.358876	NM_001039677	ENSMUSG00000028836	Slc30a2	ZnT-2|Znt2	solute carrier family 30 (zinc transporter), member 2	protein-coding	0.055000	0.626866	
mm_76513.1	chr8	87233305	87233505	-	1	NA	NA	NA	-33555	NR_040697	100038706	Mm.334690	NR_040697	ENSMUSG00000099207	Gm10637	ENSMUSG00000074176	predicted gene 10637	ncRNA	0.020000	0.542289	
mm_129370.1	chr15	77994999	77995199	-	1	NA	NA	NA	-24275	NM_018749	55944	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	0.065000	0.562189	
mm_9258.1	chr1	171605160	171605360	-	1	NA	NA	NA	2074	NR_102726	17085	Mm.560	NM_008534	ENSMUSG00000004707	Ly9	AI893573|CD229|Lgp100|Ly-9|SLAMF3|T100	lymphocyte antigen 9	protein-coding	0.005000	0.467662	
mm_18973.1	chr2	76841054	76841254	-	1	NA	NA	NA	141393	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.025000	0.452736	
mm_71663.1	chr8	60640284	60640484	+	1	NA	NA	NA	7559	NM_001293769	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	0.015000	0.477612	-33(GCATATAAATGG,-,0.00)
mm_117453.1	chr13	74808545	74808745	-	1	NA	NA	NA	115	NM_001301153	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.040000	0.626866	
mm_15465.1	chr2	157456832	157457032	+	1	NA	NA	NA	32639	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.010000	0.517413	
mm_149396.1	chr19	11388198	11388398	+	1	NA	NA	NA	12810	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.025000	0.422886	
mm_88776.1	chr10	80398943	80399143	+	1	NA	NA	NA	488	NM_013595	17192	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.150000	0.736318	
mm_24468.1	chr3	90654130	90654330	+	1	NA	NA	NA	-72	NM_199422	381493	Mm.291525	NM_199422	ENSMUSG00000063767	S100a7a	AY465109|Gm1020|S100A7L1|S100A7f|S100a15|S100a15a|S100a17l1	S100 calcium binding protein A7A	protein-coding	0.005000	0.527363	
mm_51164.1	chr6	70726383	70726583	+	1	NA	NA	NA	65692	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.010000	0.477612	
mm_98650.1	chr11	96251553	96251753	+	1	NA	NA	NA	-7	NR_037977	193022	Mm.169508	NR_037977		Gm53	-	predicted gene 53	ncRNA	0.115000	0.696517	
mm_44797.1	chr5	32746248	32746448	-	1	NA	NA	NA	-6	NM_001347332	320951	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.020000	0.572139	-90(TCCTCTTAAAGG,-,0.00),-89(CCTCTTAAAGGG,+,0.00),-88(CTCTTAAAGGGC,+,0.00),-87(TCTTAAAGGGCC,+,0.00)
mm_145391.1	chr18	57142582	57142782	+	1	NA	NA	NA	9592	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.005000	0.447761	
mm_49736.1	chr6	34745642	34745842	+	1	NA	NA	NA	-34690	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.050000	0.532338	
mm_17201.1	chr2	25469000	25469200	-	1	NA	NA	NA	649	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.035000	0.611940	
mm_141211.1	chr17	27133553	27133753	-	1	NA	NA	NA	238	NM_026063	67267	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	0.085000	0.641791	
mm_10768.1	chr2	24214672	24214872	+	1	NA	NA	NA	-645	NM_019450	54448	Mm.133095	NM_019450	ENSMUSG00000026984	Il1f6	Fil1|IL-1H1|IL1RP2|Il1f9|Il36a	interleukin 1 family, member 6	protein-coding	0.005000	0.412935	-33(CCCTTTAAAAAT,-,0.00)
mm_156548.1	chrX	151520568	151520768	+	1	NA	NA	NA	-4	NM_177201	320595	Mm.17156	NM_177201	ENSMUSG00000041229	Phf8	9830141C09Rik|mKIAA1111	PHD finger protein 8	protein-coding	0.090000	0.626866	
mm_104471.1	chr11	95309625	95309825	-	1	NA	NA	NA	521	NM_001195004	217127	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	0.085000	0.592040	
mm_4401.1	chr1	172376820	172377020	+	1	NA	NA	NA	389	NM_026234	67556	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	0.100000	0.626866	
mm_11908.1	chr2	51972261	51972461	+	1	NA	NA	NA	847	NM_001141949	64685	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0.020000	0.537313	
mm_25230.1	chr3	103860253	103860453	+	1	NA	NA	NA	76	NM_008979	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.010000	0.502488	
mm_90655.1	chr10	128798861	128799061	+	1	NA	NA	NA	5409	NM_178066	73827	Mm.24630	NM_178066	ENSMUSG00000047090	Tmem198b	1110012D08Rik	transmembrane protein 198b	protein-coding	0.025000	0.527363	
mm_161808.1	chr17	63492652	63492852	-	1	NA	NA	NA	7828	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.005000	0.452736	
mm_150974.1	chr19	46501596	46501796	+	1	NA	NA	NA	48	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.040000	0.577114	
mm_136443.1	chr16	94856590	94856790	-	1	NA	NA	NA	0	NM_001025590	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.015000	0.606965	
mm_8821.1	chr1	162246674	162246874	-	1	NA	NA	NA	23406	NR_029796	387210		NR_029796	ENSMUSG00000065516	Mir214	Mirn214|mir-214|mmu-mir-214	microRNA 214	ncRNA	0.010000	0.323383	
mm_64431.1	chr7	142577774	142577974	+	1	NA	NA	NA	272	NR_130974	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.040000	0.592040	
mm_11346.1	chr2	30845186	30845386	+	1	NA	NA	NA	-81	NM_009116	20204	Mm.1802	NM_009116	ENSMUSG00000039476	Prrx2	Prx2|S8	paired related homeobox 2	protein-coding	0.110000	0.736318	
mm_35082.1	chr4	7454982	7455182	-	1	NA	NA	NA	-105606	NR_040645	71510	Mm.410775	NR_040645	ENSMUSG00000086070	8430436N08Rik	-	RIKEN cDNA 8430436N08 gene	ncRNA	0.015000	0.398010	
mm_33270.1	chr4	127987799	127987999	+	1	NA	NA	NA	-145	NM_001281955	329942	Mm.421342	NM_001281955	ENSMUSG00000028804	Csmd2	Gm139	CUB and Sushi multiple domains 2	protein-coding	0.100000	0.606965	
mm_72572.1	chr8	84130158	84130358	+	1	NA	NA	NA	4269	NM_001013384	244550	Mm.334654	NM_001013384	ENSMUSG00000012889	Podnl1	5832418A03Rik|Gm506	podocan-like 1	protein-coding	0.005000	0.467662	
mm_43686.1	chr5	138820866	138821066	+	1	NA	NA	NA	886	NM_001195128	384244	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0.075000	0.621891	
mm_74174.1	chr8	123446974	123447174	+	1	NA	NA	NA	3815	NM_001281803	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.020000	0.542289	
mm_57238.1	chr6	123282924	123283124	-	1	NA	NA	NA	6847	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.010000	0.457711	
mm_35512.1	chr4	41094807	41095007	-	1	NA	NA	NA	3276	NM_016689	11828	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	0.015000	0.507463	
mm_96949.1	chr11	70562810	70563010	+	1	NA	NA	NA	29	NM_016713	50932	Mm.42967	NM_016713	ENSMUSG00000020827	Mink1	B55|MINK|Map4k6|Ysk2	misshapen-like kinase 1 (zebrafish)	protein-coding	0.150000	0.796020	
mm_81250.1	chr9	107975556	107975756	+	1	NA	NA	NA	89	NM_023738	74153	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0.015000	0.542289	
mm_3466.1	chr1	150104325	150104525	+	1	NA	NA	NA	4394	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.015000	0.487562	
mm_105640.1	chr11	107012606	107012806	-	1	NA	NA	NA	-13181	NM_010655	16647	Mm.12508	NM_010655	ENSMUSG00000018362	Kpna2	2410044B12Rik|IPOA1|PTAC58|Rch1	karyopherin (importin) alpha 2	protein-coding	0.110000	0.616915	
mm_127012.1	chr15	95852080	95852280	+	1	NA	NA	NA	61337	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.005000	0.512438	
mm_75158.1	chr8	36265693	36265893	-	1	NA	NA	NA	-16277	NM_001081150	244421	Mm.324032	NM_001081150	ENSMUSG00000039633	Lonrf1	-	LON peptidase N-terminal domain and ring finger 1	protein-coding	0.010000	0.407960	
mm_132264.1	chr16	32776233	32776433	+	1	NA	NA	NA	21102	NM_146071	224116	Mm.153301	NM_146071	ENSMUSG00000035638	Muc20	BC026367	mucin 20	protein-coding	0.015000	0.527363	
mm_20078.1	chr2	120609200	120609400	-	1	NA	NA	NA	15	NM_025657	66606	Mm.428639	NM_025657	ENSMUSG00000027286	Lrrc57	2810002D13Rik|AA407405	leucine rich repeat containing 57	protein-coding	0.085000	0.656716	
mm_28272.1	chr3	88772490	88772690	-	1	NA	NA	NA	9	NM_018804	229521	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0.060000	0.587065	
mm_78242.1	chr9	21632695	21632895	+	1	NA	NA	NA	16626	NM_001174078	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.005000	0.547264	
mm_135589.1	chr16	50591027	50591227	-	1	NA	NA	NA	27	NM_027046	69339	Mm.422869	NM_027046	ENSMUSG00000050685	Ccdc54	1700007N18Rik|AI644412|BB013989|NYD-SP17	coiled-coil domain containing 54	protein-coding	0.005000	0.467662	
mm_151510.1	chr19	58733328	58733528	+	1	NA	NA	NA	4541	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.010000	0.537313	
mm_59744.1	chr7	28818498	28818698	+	1	NA	NA	NA	-6740	NM_016772	51798	Mm.291776	NM_016772	ENSMUSG00000053898	Ech1	AA617331	enoyl coenzyme A hydratase 1, peroxisomal	protein-coding	0.050000	0.656716	
mm_68561.1	chr7	114636207	114636407	-	1	NA	NA	NA	50	NM_001289444	12310	Mm.4361	NM_007587	ENSMUSG00000030669	Calca	CA|CGRP-1|CGRP1|Calc|Calc1|Cgrp|Ct|Ctn	calcitonin/calcitonin-related polypeptide, alpha	protein-coding	0.045000	0.661692	
mm_127979.1	chr15	12419537	12419737	-	1	NA	NA	NA	98141	NM_025673	66629	Mm.157655	NM_025673	ENSMUSG00000022200	Golph3	4733401N08Rik|5730410D03Rik|AW413496	golgi phosphoprotein 3	protein-coding	0.020000	0.527363	57(CCTTTTAGATGC,+,0.00)
mm_146426.1	chr18	84851264	84851464	+	1	NA	NA	NA	-50	NM_025797	109672	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.050000	0.651741	
mm_145638.1	chr18	61116986	61117186	+	1	NA	NA	NA	-382	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.015000	0.507463	
mm_15587.1	chr2	160364380	160364580	+	1	NA	NA	NA	2585	NM_010658	16658	Mm.330745	NM_010658	ENSMUSG00000074622	Mafb	Kreisler|Krml|Krml1|kr	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)	protein-coding	0.020000	0.507463	
mm_103103.1	chr11	69947321	69947521	-	1	NA	NA	NA	769	NM_009204	20528	Mm.10661	NM_009204	ENSMUSG00000018566	Slc2a4	Glut-4|Glut4	solute carrier family 2 (facilitated glucose transporter), member 4	protein-coding	0.025000	0.641791	
mm_141309.1	chr17	28350684	28350884	-	1	NA	NA	NA	21	NM_011566	21678	Mm.6655	NM_011566	ENSMUSG00000002249	Tead3	DTEF-1|ETFR-1|TEAD-3|TEF-5|Tcf13r2	TEA domain family member 3	protein-coding	0.115000	0.756219	
mm_62656.1	chr7	107693188	107693388	+	1	NA	NA	NA	64744	NM_001205227	320635	Mm.132828	NM_177216	ENSMUSG00000048065	Cyb5r2	D630003K02Rik|b5R.2	cytochrome b5 reductase 2	protein-coding	0.045000	0.532338	
mm_155223.1	chrX	57065923	57066123	+	1	NA	NA	NA	12189	NM_029371	72459	Mm.2152	NM_028242	ENSMUSG00000067873	Htatsf1	1600023H17Rik|2600017A12Rik|2700077B20Rik|TAT-SF1	HIV TAT specific factor 1	protein-coding	0.010000	0.522388	
mm_53478.1	chr6	134937644	134937844	+	1	NA	NA	NA	8652	NR_037955	381822	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	0.015000	0.393035	-38(TCCCTTAAAAGT,-,0.00)
mm_133506.1	chr16	90738146	90738346	+	1	NA	NA	NA	-78	NM_029844	77037	Mm.22455	NM_029844	ENSMUSG00000039956	Mrap	1110025G12Rik|Falp|ORF61	melanocortin 2 receptor accessory protein	protein-coding	0.040000	0.527363	
mm_149023.1	chr19	8757047	8757247	+	1	NA	NA	NA	30	NM_001276704	53319	Mm.7271	NM_016813	ENSMUSG00000010097	Nxf1	Mex67|Mvb1|Tap	nuclear RNA export factor 1	protein-coding	0.130000	0.676617	
mm_107040.1	chr12	13594142	13594342	+	1	NA	NA	NA	33404	NR_136761	102639399	Mm.122052	NR_136761		Gm35725	-	predicted gene, 35725	ncRNA	0.020000	0.567164	-34(GCCTTTCTAGGC,+,0.00)
mm_131098.1	chr16	4964161	4964361	+	1	NA	NA	NA	-24	NM_028301	72615	Mm.290628	NM_028301	ENSMUSG00000022515	Anks3	2700067D09Rik|C81345|mKIAA1977	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding	0.110000	0.686567	
mm_122907.1	chr14	54953780	54953980	-	1	NA	NA	NA	-4738	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.025000	0.522388	
mm_151865.1	chr19	5797498	5797698	-	1	NA	NA	NA	-1617	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.010000	0.432836	
mm_118943.1	chr14	27335710	27335910	+	1	NA	NA	NA	-227	NM_001289687	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.035000	0.611940	
mm_160651.1	chr9	111311526	111311726	+	1	NA	NA	NA	-113	NM_001164659	320429	Mm.270754	NM_001164659	ENSMUSG00000062296	Trank1	A230061D21Rik|C030048J01Rik|Gm187|Lba1	tetratricopeptide repeat and ankyrin repeat containing 1	protein-coding	0.130000	0.696517	
mm_17505.1	chr2	28916531	28916731	-	1	NA	NA	NA	-191	NM_001164186	54422	Mm.21390	NM_019446	ENSMUSG00000026805	Barhl1	Dres115|MBH2	BarH-like 1 (Drosophila)	protein-coding	0.055000	0.462687	
mm_145832.1	chr18	65441689	65441889	+	1	NA	NA	NA	10792	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.005000	0.427861	
mm_19288.1	chr2	90450713	90450913	-	1	NA	NA	NA	28361	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.000000	0.333333	
mm_76227.1	chr8	83573046	83573246	-	1	NA	NA	NA	6388	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.045000	0.577114	67(TCATTTATGGCC,+,0.00)
mm_61229.1	chr7	64502023	64502223	+	1	NA	NA	NA	-15	NM_001291166	11784	Mm.4657	NM_007461	ENSMUSG00000030519	Apba2	X11-like|X11L|XllL|mXllL	amyloid beta (A4) precursor protein-binding, family A, member 2	protein-coding	0.170000	0.781095	
mm_32332.1	chr4	104367509	104367709	+	1	NA	NA	NA	71	NM_177259	13131	Mm.289682	NM_010014	ENSMUSG00000028519	Dab1	AI956902|C630028C02Rik|scm|scr|scrambler|yot	disabled 1	protein-coding	0.120000	0.756219	
mm_131529.1	chr16	17646422	17646622	+	1	NA	NA	NA	52	NM_001166164	72315	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.160000	0.825871	
mm_111155.1	chr12	83424848	83425048	-	1	NA	NA	NA	62788	NM_001267626	70127	Mm.151308	NM_058212	ENSMUSG00000021221	Dpf3	2810403B03Rik|6530402L11Rik|BAF45C|C78788|CERD4|cer-d4	D4, zinc and double PHD fingers, family 3	protein-coding	0.030000	0.552239	-33(CCATATATAACC,+,0.00)
mm_25446.1	chr3	108283995	108284195	+	1	NA	NA	NA	31	NM_019972	20661	Mm.157119	NM_019972	ENSMUSG00000068747	Sort1	2900053A11Rik|AI852375|Ntr3|Ntsr3	sortilin 1	protein-coding	0.130000	0.766169	
mm_66694.1	chr7	45916684	45916884	-	1	NA	NA	NA	4065	NM_001146346	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.015000	0.442786	
mm_60774.1	chr7	45559125	45559325	+	1	NA	NA	NA	4297	NM_025330	66065	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.015000	0.626866	
mm_171552.1	chr4	147131917	147132117	+	1	NA	NA	NA	-43849	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.040000	0.502488	
mm_60802.1	chr7	45627417	45627617	+	1	NA	NA	NA	-20	NM_028544	69903	Mm.181396	NM_028544	ENSMUSG00000044562	Rasip1	1110025D03Rik|2610025P08Rik|AI853551|Rain	Ras interacting protein 1	protein-coding	0.035000	0.621891	
mm_133721.1	chr16	93711817	93712017	+	1	NA	NA	NA	10	NM_027293	70028	Mm.23230	NM_026700	ENSMUSG00000022946	Dopey2	0610038M01Rik|2610510B01Rik|AI503246|C21orf5|mKIAA0933	dopey family member 2	protein-coding	0.105000	0.751244	
mm_94195.1	chr10	130541862	130542062	-	1	NA	NA	NA	-44583	NM_001103366	625131	Mm.469844	NM_001103366	ENSMUSG00000091511	Vmn2r87	EG625131	vomeronasal 2, receptor 87	protein-coding	0.025000	0.552239	
mm_40069.1	chr5	34278712	34278912	+	1	NA	NA	NA	9512	NM_001015039	231125	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.010000	0.547264	
mm_54314.1	chr6	30174005	30174205	-	1	NA	NA	NA	20	NR_126540	101447999		NR_126540		Mirc35hg	-	microRNA cluster 35, host gene	ncRNA	0.095000	0.681592	
mm_107411.1	chr12	33957753	33957953	+	1	NA	NA	NA	182	NM_011658	22160	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	0.130000	0.820896	
mm_58633.1	chr7	5095591	5095791	+	1	NA	NA	NA	15456	NM_001252454	13854	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0.015000	0.606965	
mm_154981.1	chrX	38066443	38066643	+	1	NA	NA	NA	68	NM_001024850	434769	Mm.244139	NM_001024850	ENSMUSG00000053909	Rhox10	-	reproductive homeobox 10	protein-coding	0.030000	0.527363	
mm_124236.1	chr14	101477136	101477336	-	1	NA	NA	NA	131955	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.040000	0.567164	
mm_147879.1	chr18	64660661	64660861	-	1	NA	NA	NA	239	NM_001001488	54670	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0.105000	0.756219	
mm_131341.1	chr16	13401007	13401207	+	1	NA	NA	NA	42686	NM_153588	239719	Mm.270643	NM_153588	ENSMUSG00000009569	Mkl2	ENSMUSG00000075401|Gt4-1|MRTF-B|Mrtfb|mKIAA1243	MKL/myocardin-like 2	protein-coding	0.005000	0.492537	
mm_159242.1	chr2	150451387	150451587	-	1	NA	NA	NA	14	NM_001310645	668923	Mm.393876	NM_001177550	ENSMUSG00000068130	Zfp442	OTTMUSG00000015730|ZIPO-II	zinc finger protein 442	protein-coding	0.035000	0.542289	
mm_21044.1	chr2	152539998	152540198	-	1	NA	NA	NA	-57	NM_001001444	75400	Mm.45560	NM_001001444	ENSMUSG00000044249	Defb29	0610030I09Rik|BD-29|mBD-29	defensin beta 29	protein-coding	0.010000	0.562189	
mm_46766.1	chr5	112267295	112267495	-	1	NA	NA	NA	-9296	NM_001326590	22022	Mm.250631	NM_009419	ENSMUSG00000029344	Tpst2	AI448750|D5Ucla3|Tango13b|grm|grt	protein-tyrosine sulfotransferase 2	protein-coding	0.020000	0.557214	
mm_12031.1	chr2	58567206	58567406	+	1	NA	NA	NA	-28	NM_001289660	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.095000	0.716418	
mm_161803.1	chr17	56093508	56093708	+	1	NA	NA	NA	13977	NM_001304785	15193	Mm.12966	NM_008233	ENSMUSG00000002833	Hdgfrp2	HRP-2	hepatoma-derived growth factor, related protein 2	protein-coding	0.035000	0.592040	
mm_114615.1	chr13	75849254	75849454	+	1	NA	NA	NA	9468	NM_053108	93692	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.015000	0.477612	
mm_164379.1	chr16	30510611	30510811	+	1	NA	NA	NA	39867	NM_172614	224090	Mm.241459	NM_172614	ENSMUSG00000022537	Tmem44	1700007N03Rik|9330161C17Rik|B230220N21	transmembrane protein 44	protein-coding	0.065000	0.641791	
mm_120906.1	chr14	76081594	76081794	+	1	NA	NA	NA	29121	NM_026177	67467	Mm.260767	NM_026177	ENSMUSG00000022008	Gpalpp1	1200011I18Rik|Kiaa1704	GPALPP motifs containing 1	protein-coding	0.035000	0.512438	-30(CCATATAAAAAC,-,0.00)
mm_166143.1	chr5	3494828	3495028	+	1	NA	NA	NA	-48905	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.015000	0.477612	
mm_139364.1	chr17	50642999	50643199	+	1	NA	NA	NA	-55582	NM_001297747	12228	Mm.392910	NM_009770	ENSMUSG00000022863	Btg3	ANA|tob5	B cell translocation gene 3	protein-coding	0.000000	0.442786	
mm_141556.1	chr17	32211193	32211393	-	1	NA	NA	NA	-21744	NM_001347341	71932	Mm.176240	NM_001033163	ENSMUSG00000037577	Ephx3	2310063B19Rik|Abhd9	epoxide hydrolase 3	protein-coding	0.025000	0.527363	
mm_32892.1	chr4	118964122	118964322	+	1	NA	NA	NA	2255	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.010000	0.507463	
mm_45713.1	chr5	84417016	84417216	-	1	NA	NA	NA	266	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.060000	0.611940	
mm_66834.1	chr7	48877976	48878176	-	1	NA	NA	NA	2965	NM_001013368	108961	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.025000	0.487562	
mm_169047.1	chr13	16490695	16490895	-	1	NA	NA	NA	478944	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.020000	0.522388	
mm_79258.1	chr9	50752894	50753094	+	1	NA	NA	NA	23	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.020000	0.582090	
mm_121391.1	chr14	119099387	119099587	+	1	NA	NA	NA	-53	NM_001081252	66435	Mm.213406	NM_025561	ENSMUSG00000042104	Uggt2	1810064L21Rik|3110001A05Rik|3110027P15Rik|A230065J02Rik|AW047562|Ugcgl2	UDP-glucose glycoprotein glucosyltransferase 2	protein-coding	0.125000	0.731343	
mm_68843.1	chr7	126364778	126364978	-	1	NA	NA	NA	3167	NR_106025	102466797		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.000000	0.577114	
mm_92721.1	chr10	80803949	80804149	-	1	NA	NA	NA	-1199	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.020000	0.626866	
mm_121277.1	chr14	103650154	103650354	+	1	NA	NA	NA	11	NM_198014	105439	Mm.27548	NM_198014	ENSMUSG00000055717	Slain1	9630044O09Rik|AA675320|AW742596	SLAIN motif family, member 1	protein-coding	0.125000	0.746269	
mm_130596.1	chr15	99772327	99772527	-	1	NA	NA	NA	88	NM_028015	71949	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	0.090000	0.731343	
mm_15160.1	chr2	154009696	154009896	+	1	NA	NA	NA	1520	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.010000	0.467662	
mm_15289.1	chr2	155276844	155277044	+	1	NA	NA	NA	580	NR_046364	66734	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0.100000	0.736318	
mm_82717.1	chr9	24722905	24723105	-	1	NA	NA	NA	-26712	NM_001166207	320752	Mm.46158	NM_001166207	ENSMUSG00000085576	Dpy19l2	4932443J21Rik|Gm18376	dpy-19-like 2 (C. elegans)	protein-coding	0.000000	0.328358	
mm_2498.1	chr1	106171590	106171790	+	1	NA	NA	NA	-166	NR_040630	626049	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0.105000	0.676617	
mm_35508.1	chr4	41093496	41093696	-	1	NA	NA	NA	4587	NM_016689	11828	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	0.020000	0.606965	
mm_167786.1	chr9	120492557	120492757	+	1	NA	NA	NA	51	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.175000	0.721393	
mm_47221.1	chr5	121191255	121191455	-	1	NA	NA	NA	42	NM_001109992	19247	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0.160000	0.825871	
mm_90783.1	chr10	6980404	6980604	-	1	NA	NA	NA	-39	NM_001170801	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.015000	0.457711	
mm_153892.1	chr19	46969467	46969667	-	1	NA	NA	NA	0	NM_001164365	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.010000	0.432836	35(GCTCTTTAAAGG,-,0.00),36(CTCTTTAAAGGA,+,0.00),36(CTCTTTAAAGGA,-,0.00),37(TCTTTAAAGGAC,+,0.00)
mm_155653.1	chrX	85870230	85870430	+	1	NA	NA	NA	57	NM_001163539	71398	Mm.185296	NM_001163539	ENSMUSG00000025058	5430427O19Rik	-	RIKEN cDNA 5430427O19 gene	protein-coding	0.005000	0.437811	
mm_61999.1	chr7	91162575	91162775	+	1	NA	NA	NA	71889	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.010000	0.447761	
mm_73120.1	chr8	94772102	94772302	+	1	NA	NA	NA	22	NM_009142	20312	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	0.085000	0.681592	-31(CATTATAAAAAG,-,0.00)
mm_75247.1	chr8	39643610	39643810	-	1	NA	NA	NA	-1032	NM_001113326	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.005000	0.432836	
mm_135990.1	chr16	75092989	75093189	-	1	NA	NA	NA	492972	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.020000	0.427861	
mm_158711.1	chrX	162552493	162552693	-	1	NA	NA	NA	91065	NM_001290633	194590	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	0.030000	0.562189	
mm_91566.1	chr10	40025294	40025494	-	1	NA	NA	NA	-126	NM_144821	215929	Mm.55513	NM_144821	ENSMUSG00000038522	Mfsd4b1	AI317395|AI482555|Naglt1a	major facilitator superfamily domain containing 4B1	protein-coding	0.040000	0.557214	
mm_35921.1	chr4	53031684	53031884	-	1	NA	NA	NA	19904	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.005000	0.318408	
mm_108583.1	chr12	85111069	85111269	+	1	NA	NA	NA	336	NM_030225	78920	Mm.296221	NM_030225	ENSMUSG00000004789	Dlst	1600017E01Rik|4632413C10Rik|4930529O08Rik|DLTS	dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	protein-coding	0.130000	0.721393	
mm_105251.1	chr11	102353183	102353383	-	1	NA	NA	NA	11998	NM_011403	20533	Mm.7248	NM_011403	ENSMUSG00000006574	Slc4a1	Ae1|CD233|Empb3|l11Jus51	solute carrier family 4 (anion exchanger), member 1	protein-coding	0.035000	0.547264	
mm_144490.1	chr18	24205271	24205471	+	1	NA	NA	NA	27	NM_013814	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.130000	0.741294	
mm_76524.1	chr8	87472457	87472657	-	1	NA	NA	NA	35	NM_019626	12404	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0.115000	0.731343	
mm_154987.1	chrX	38189736	38189936	+	1	NA	NA	NA	43	NM_001079513	56805	Mm.391248	NM_020256	ENSMUSG00000048047	Zbtb33	AW260253|E130014G12Rik|Kaiso|Znf-kaiso	zinc finger and BTB domain containing 33	protein-coding	0.130000	0.716418	-30(ACATTTAAAGCG,+,0.00)
mm_61402.1	chr7	73391168	73391368	+	1	NA	NA	NA	-15494	NR_040324	319783	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.090000	0.676617	
mm_162913.1	chr10	119692329	119692529	+	1	NA	NA	NA	69270	NR_045359	75321	Mm.402041	NR_045359	ENSMUSG00000084764	Grip1os2	4930564G21Rik	glutamate receptor interacting protein 1, opposite strand 2	ncRNA	0.050000	0.631841	
mm_157519.1	chrX	50585389	50585589	-	1	NA	NA	NA	48100	NR_131207	102639259	Mm.350898	NR_131207		Gm35612	-	predicted gene, 35612	ncRNA	0.010000	0.293532	
mm_29746.1	chr3	126972598	126972798	-	1	NA	NA	NA	25754	NM_178655	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.005000	0.412935	
mm_121414.1	chr14	119643955	119644155	+	1	NA	NA	NA	-105172	NR_045621	75432	Mm.443277	NR_045621	ENSMUSG00000100274	1700006F04Rik	-	RIKEN cDNA 1700006F04 gene	ncRNA	0.050000	0.547264	
mm_31649.1	chr4	59633328	59633528	+	1	NA	NA	NA	7217	NM_153158	230259	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	0.000000	0.368159	-42(TCTTTTATACAT,+,0.00),-6(TTTTTTAAAGCA,+,0.00)
mm_70439.1	chr8	11713181	11713381	+	1	NA	NA	NA	-14824	NM_001113517	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.025000	0.457711	
mm_92023.1	chr10	62422322	62422522	-	1	NA	NA	NA	35	NM_145419	216019	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	0.055000	0.547264	
mm_142795.1	chr17	50190190	50190390	-	1	NA	NA	NA	207	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.145000	0.746269	
mm_72788.1	chr8	86885052	86885252	+	1	NA	NA	NA	106	NM_030563	80750	Mm.25117	NM_030563	ENSMUSG00000031652	N4bp1	AI481586|C81621	NEDD4 binding protein 1	protein-coding	0.155000	0.800995	
mm_141149.1	chr17	26506159	26506359	-	1	NA	NA	NA	2213	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.020000	0.562189	-59(TACCTTAAAAGC,-,0.00),-57(CCTTAAAAGCCC,+,0.00)
mm_4843.1	chr1	186966980	186967180	+	1	NA	NA	NA	-336	NM_033077	110957	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding	0.045000	0.606965	
mm_82369.1	chr9	14614732	14614932	-	1	NA	NA	NA	168	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.085000	0.701493	
mm_37627.1	chr4	127330722	127330922	-	1	NA	NA	NA	14	NM_001160012	14620	Mm.90003	NM_008126	ENSMUSG00000042367	Gjb3	Cnx31|Cx31|D4Wsu144e|Gjb-3	gap junction protein, beta 3	protein-coding	0.050000	0.577114	
mm_72619.1	chr8	84638428	84638628	+	1	NA	NA	NA	24324	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.010000	0.567164	
mm_17228.1	chr2	25571211	25571411	-	1	NA	NA	NA	5	NM_001081199	381352	Mm.289046	NM_001081199	ENSMUSG00000026941	Mamdc4	Gm995	MAM domain containing 4	protein-coding	0.010000	0.547264	
mm_78681.1	chr9	40784907	40785107	+	1	NA	NA	NA	-16266	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.020000	0.417910	
mm_111908.1	chr12	108792548	108792748	-	1	NA	NA	NA	-663	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.170000	0.726368	
mm_114036.1	chr13	53001766	53001966	+	1	NA	NA	NA	-20827	NM_017373	18030	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0.020000	0.462687	47(GTGTATATAGGC,-,0.00)
mm_120679.1	chr14	70577765	70577965	+	1	NA	NA	NA	18	NM_153136	213484	Mm.34191	NM_153136	ENSMUSG00000045211	Nudt18	BC036718	nudix (nucleoside diphosphate linked moiety X)-type motif 18	protein-coding	0.090000	0.716418	
mm_60314.1	chr7	44198081	44198281	+	1	NA	NA	NA	-10	NM_008693	18050	Mm.439740	NM_008693	ENSMUSG00000066515	Klk1b3	Ngfg|gamma-NGF|mGk-3	kallikrein 1-related peptidase b3	protein-coding	0.000000	0.537313	-8(GGGTTTTTAAAG,-,0.00),-6(GTTTTTAAAGTC,+,0.00)
mm_6855.1	chr1	84262108	84262308	-	1	NA	NA	NA	22437	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.005000	0.338308	
mm_60183.1	chr7	43177492	43177692	+	1	NA	NA	NA	4	NM_001034893	668620	Mm.388871	NM_001034893	ENSMUSG00000064194	Zfp936	EG435970|EG668620|Gm9272|I1C0022H11Rik	zinc finger protein 936	protein-coding	0.030000	0.572139	
mm_94800.1	chr11	22990298	22990498	+	1	NA	NA	NA	-195	NM_009837	12464	Mm.296985	NM_009837	ENSMUSG00000007739	Cct4	2610204B21Rik|A45|C78323|Cctd	chaperonin containing Tcp1, subunit 4 (delta)	protein-coding	0.035000	0.492537	
mm_14246.1	chr2	128063005	128063205	+	1	NA	NA	NA	-62933	NM_207681	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.025000	0.497512	
mm_74633.1	chr8	13198044	13198244	-	1	NA	NA	NA	2480	NM_025768	66790	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	0.010000	0.432836	
mm_63906.1	chr7	139213296	139213496	+	1	NA	NA	NA	-89	NM_001162540	57740	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	0.080000	0.696517	
mm_127805.1	chr15	4642871	4643071	-	1	NA	NA	NA	-84239	NM_016704	12274	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	0.005000	0.482587	45(CTACATAAAAGG,-,0.00)
mm_2284.1	chr1	91338562	91338762	+	1	NA	NA	NA	-12411	NM_027551	70788	Mm.68617	NM_027551	ENSMUSG00000026308	Klhl30	4631423F02Rik	kelch-like 30	protein-coding	0.050000	0.641791	38(GCCTCTAAGAGC,-,0.00),39(CCTCTAAGAGCC,+,0.00)
mm_119140.1	chr14	31209374	31209574	+	1	NA	NA	NA	1162	NM_009393	21924	Mm.439921	NM_009393	ENSMUSG00000091898	Tnnc1	AI874626|TnC|cTnC|cTnI|tncc	troponin C, cardiac/slow skeletal	protein-coding	0.010000	0.467662	-70(CCCTTTAAAAAT,-,0.00)
mm_8331.1	chr1	150015196	150015396	-	1	NA	NA	NA	36906	NR_106112	102465760		NR_106112	ENSMUSG00000098906	Mir7652	Gm27932|mmu-mir-7652	microRNA 7652	ncRNA	0.000000	0.333333	
mm_112068.1	chr12	111981044	111981244	-	1	NA	NA	NA	-393	NM_001127685	217874	Mm.134213	NM_001127685	ENSMUSG00000091402	Rd3l	A930011N13	retinal degeneration 3-like	protein-coding	0.020000	0.482587	
mm_98458.1	chr11	94947567	94947767	+	1	NA	NA	NA	11443	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.025000	0.611940	
mm_64730.1	chr7	4709888	4710088	-	1	NA	NA	NA	15094	NM_001142792	330460	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	0.005000	0.402985	
mm_160605.1	chr9	78293917	78294117	+	1	NA	NA	NA	4089	NM_001122660	100042314	Mm.482247	NM_001122660	ENSMUSG00000074179	Gm10639	ENSMUSG00000074179	predicted gene 10639	protein-coding	0.010000	0.452736	
mm_64472.1	chr7	143005677	143005877	+	1	NA	NA	NA	118	NM_001128081	27027	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.005000	0.557214	
mm_37282.1	chr4	118968525	118968725	-	1	NA	NA	NA	6658	NM_133892	100470	Mm.26698	NM_133892	ENSMUSG00000024903	Lao1	AW990848	L-amino acid oxidase 1	protein-coding	0.015000	0.517413	65(GCCTCTAAAGAG,-,0.00)
mm_35675.1	chr4	43653450	43653650	-	1	NA	NA	NA	44	NM_001290462	433700	Mm.331569	NM_001007463	ENSMUSG00000066196	Spag8	MH-SPAG8|SMP-1	sperm associated antigen 8	protein-coding	0.060000	0.567164	
mm_164455.1	chr16	55282841	55283041	-	1	NA	NA	NA	296	NM_178720	239852	Mm.245045	NM_178720	ENSMUSG00000064310	Zpld1	9430016A21Rik	zona pellucida like domain containing 1	protein-coding	0.000000	0.427861	
mm_25327.1	chr3	106567964	106568164	+	1	NA	NA	NA	-20262	NM_133869	99712	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.005000	0.318408	50(CTCTTTAAAAAA,-,0.00)
mm_108273.1	chr12	78861621	78861821	+	1	NA	NA	NA	-83	NM_023721	73834	Mm.311549	NM_023721	ENSMUSG00000021114	Atp6v1d	1110004P10Rik|Atp6m|VATD|Vma8	ATPase, H+ transporting, lysosomal V1 subunit D	protein-coding	0.090000	0.666667	
mm_56861.1	chr6	118197656	118197856	-	1	NA	NA	NA	-12	NM_001080780	19713	Mm.57199	NM_009050	ENSMUSG00000030110	Ret	PTC|RET51|RET9|c-Ret	ret proto-oncogene	protein-coding	0.065000	0.587065	
mm_19836.1	chr2	112367929	112368129	-	1	NA	NA	NA	-2	NM_026519	68032	Mm.220942	NM_026519	ENSMUSG00000027131	Emc4	2610318K02Rik|Tmem85	ER membrane protein complex subunit 4	protein-coding	0.080000	0.532338	
mm_16467.1	chr2	180710062	180710262	+	1	NA	NA	NA	-64	NM_001289652	76425	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	0.140000	0.666667	
mm_83099.1	chr9	40321235	40321435	-	1	NA	NA	NA	-12137	NR_040728	73558	Mm.398307	NR_040728		1700110K17Rik	-	RIKEN cDNA 1700110K17 gene	ncRNA	0.010000	0.497512	
mm_60927.1	chr7	46847104	46847304	+	1	NA	NA	NA	122	NM_001136069	16828	Mm.29324	NM_010699	ENSMUSG00000063229	Ldha	Ldh1|Ldhm|l7R2	lactate dehydrogenase A	protein-coding	0.045000	0.542289	
mm_86335.1	chr9	123113081	123113281	-	1	NA	NA	NA	24	NM_026917	69035	Mm.28300	NM_026917	ENSMUSG00000025786	Zdhhc3	1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373	zinc finger, DHHC domain containing 3	protein-coding	0.155000	0.761194	
mm_68626.1	chr7	118127103	118127303	-	1	NA	NA	NA	2422	NM_019419	54208	Mm.29924	NM_019419	ENSMUSG00000030654	Arl6ip1	AIP-6|AL022945|ARMER|AU042858|Aip-1|Arl6ip|C85138|mKIAA0069	ADP-ribosylation factor-like 6 interacting protein 1	protein-coding	0.010000	0.502488	
mm_121993.1	chr14	26515852	26516052	-	1	NA	NA	NA	18672	NM_032008	83997	Mm.36769	NM_032008	ENSMUSG00000021870	Slmap	D330001L02Rik|Miranda|Slap|mKIAA1601	sarcolemma associated protein	protein-coding	0.020000	0.437811	
mm_149491.1	chr19	11818460	11818660	+	1	NA	NA	NA	843	NM_001286543	20908	Mm.272264	NM_011502	ENSMUSG00000041488	Stx3	Syn-3	syntaxin 3	protein-coding	0.065000	0.666667	
mm_138040.1	chr17	33920306	33920506	+	1	NA	NA	NA	928	NM_009318	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.070000	0.641791	
mm_86223.1	chr9	120134937	120135137	-	1	NA	NA	NA	4603	NR_002902	104433	Mm.453530	NR_002902	ENSMUSG00000064925	Snora62	E2|MBI-13|MBI-136|Rnu108	small nucleolar RNA, H/ACA box 62	snoRNA	0.030000	0.572139	87(TACCATAAAAGG,-,0.00)
mm_70890.1	chr8	25564325	25564525	+	1	NA	NA	NA	-8342	NR_110510	102633315	Mm.437828	NR_110510	ENSMUSG00000086134	Gm16159	OTTMUSG00000031030	predicted gene 16159	ncRNA	0.050000	0.527363	
mm_7861.1	chr1	132542794	132542994	-	1	NA	NA	NA	46	NM_177129	21367	Mm.260861	NM_011531	ENSMUSG00000053024	Cntn2	D130012K04Rik|TAG-1|Tax	contactin 2	protein-coding	0.090000	0.711443	
mm_82784.1	chr9	28995981	28996181	-	1	NA	NA	NA	967048	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.020000	0.447761	
mm_124970.1	chr15	18818858	18819058	+	1	NA	NA	NA	11	NM_001316758	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0.025000	0.507463	
mm_35051.1	chr4	6355234	6355434	-	1	NA	NA	NA	-10346	NM_016807	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.015000	0.442786	
mm_44362.1	chr5	17806088	17806288	-	1	NA	NA	NA	29708	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.010000	0.432836	-28(TTCTTTAAAAGC,-,0.00),-27(TCTTTAAAAGCT,+,0.00)
mm_50059.1	chr6	41178749	41178949	+	1	NA	NA	NA	-123423	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.015000	0.407960	
mm_92481.1	chr10	78295308	78295508	-	1	NA	NA	NA	44799	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.010000	0.597015	
mm_141246.1	chr17	27513281	27513481	-	1	NA	NA	NA	-9848	NM_001291045	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.155000	0.771144	-50(CTCTTTAAAAGG,-,0.00),-49(TCTTTAAAAGGC,+,0.00),-48(CTTTAAAAGGCC,+,0.00)
mm_113905.1	chr13	49298860	49299060	+	1	NA	NA	NA	10248	NM_015759	30938	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.005000	0.373134	-65(TTTTTTAAAGGA,+,0.00)
mm_108077.1	chr12	73945697	73945897	+	1	NA	NA	NA	-18733	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.005000	0.338308	
mm_70245.1	chr8	3360749	3360949	+	1	NA	NA	NA	7434	NM_001033378	319493	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0.025000	0.621891	78(GGGCATTTAAGC,-,0.00)
mm_167441.1	chr8	120115997	120116197	-	1	NA	NA	NA	1945	NM_001163761	234797	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.010000	0.527363	
mm_137783.1	chr17	29494533	29494733	+	1	NA	NA	NA	3588	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.020000	0.522388	
mm_94819.1	chr11	23255890	23256090	+	1	NA	NA	NA	-51	NM_001035226	103573	Mm.217547	NM_134014	ENSMUSG00000020290	Xpo1	AA420417|Crm1|Exp1	exportin 1	protein-coding	0.095000	0.671642	
mm_134907.1	chr16	30260003	30260203	-	1	NA	NA	NA	7429	NM_027904	71756	Mm.290614	NM_027904	ENSMUSG00000023176	Cpn2	1300018K11Rik	carboxypeptidase N, polypeptide 2	protein-coding	0.020000	0.562189	
mm_140819.1	chr17	23193137	23193337	-	1	NA	NA	NA	-9	NM_009555	22700	Mm.437934	NM_009555	ENSMUSG00000002617	Zfp40	CTfin12|NTfin12|Zfp-40	zinc finger protein 40	protein-coding	0.065000	0.611940	
mm_149465.1	chr19	11534045	11534245	+	1	NA	NA	NA	-2704	NM_025658	66607	Mm.441056	NM_025658	ENSMUSG00000024678	Ms4a4d	2210417J23Rik	membrane-spanning 4-domains, subfamily A, member 4D	protein-coding	0.010000	0.432836	
mm_109054.1	chr12	104340386	104340586	+	1	NA	NA	NA	2000	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.005000	0.487562	
mm_94953.1	chr11	30137178	30137378	+	1	NA	NA	NA	60979	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.035000	0.592040	
mm_36196.1	chr4	62329444	62329644	-	1	NA	NA	NA	31004	NM_001045528	338355	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.005000	0.422886	
mm_95467.1	chr11	50602003	50602203	+	1	NA	NA	NA	18	NM_175643	216725	Mm.110597	NM_175643	ENSMUSG00000036545	Adamts2	ADAM-TS 2|ADAM-TS2|ADAMTS-2|PC I-NP|PCINP|pNPI	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2	protein-coding	0.140000	0.796020	
mm_128001.1	chr15	12813613	12813813	-	1	NA	NA	NA	10944	NM_029998	77877	Mm.207311	NM_029998	ENSMUSG00000022195	6030458C11Rik	-	RIKEN cDNA 6030458C11 gene	protein-coding	0.000000	0.358209	
mm_61074.1	chr7	51621615	51621815	+	1	NA	NA	NA	-115	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.025000	0.542289	
mm_58385.1	chr6	149309542	149309742	-	1	NA	NA	NA	228	NM_001289662	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.115000	0.656716	
mm_86334.1	chr9	123113044	123113244	-	1	NA	NA	NA	61	NM_026917	69035	Mm.28300	NM_026917	ENSMUSG00000025786	Zdhhc3	1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373	zinc finger, DHHC domain containing 3	protein-coding	0.145000	0.771144	
mm_57308.1	chr6	124718747	124718947	-	1	NA	NA	NA	-457	NR_029792	723944		NR_029792	ENSMUSG00000065462	Mir200c	Mirn200c|mir-200c	microRNA 200c	ncRNA	0.055000	0.661692	
mm_935.1	chr1	55605967	55606167	+	1	NA	NA	NA	200121	NM_001114663	227120	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.005000	0.393035	-85(CTTTTTATGTGG,+,0.00),-71(CACTATTTATGG,-,0.00)
mm_140731.1	chr17	15527223	15527423	-	1	NA	NA	NA	-22	NM_008799	18567	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	0.065000	0.636816	
mm_74280.1	chr8	125386201	125386401	+	1	NA	NA	NA	106409	NM_001081337	244668	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.010000	0.517413	
mm_105431.1	chr11	103953906	103954106	-	1	NA	NA	NA	50	NM_008740	18195	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	0.175000	0.796020	
mm_141518.1	chr17	31681621	31681821	-	1	NA	NA	NA	3790	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.005000	0.527363	
mm_154133.1	chr19	57314813	57315013	-	1	NA	NA	NA	40953	NR_045319	78120	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	0.115000	0.776119	
mm_62167.1	chr7	97254163	97254363	+	1	NA	NA	NA	71701	NM_001177412	244144	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.010000	0.313433	23(CTCTTTAAATGA,-,0.00)
mm_95208.1	chr11	43595984	43596184	+	1	NA	NA	NA	5478	NM_008375	16204	Mm.142716	NM_008375	ENSMUSG00000020405	Fabp6	GT|I-15P|I-BABP|ILBP|ILBP3|Illbp	fatty acid binding protein 6, ileal (gastrotropin)	protein-coding	0.030000	0.542289	
mm_82198.1	chr9	124041277	124041477	+	1	NA	NA	NA	19406	NM_009914	12771	Mm.57050	NM_009914	ENSMUSG00000035448	Ccr3	CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3	chemokine (C-C motif) receptor 3	protein-coding	0.005000	0.452736	
mm_156304.1	chrX	136837879	136838079	+	1	NA	NA	NA	15233	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.000000	0.378109	16(CAATATATAAGG,-,0.00)
mm_58586.1	chr7	4943789	4943989	+	1	NA	NA	NA	18045	NM_173008	269855	Mm.44190	NM_173008	ENSMUSG00000035279	Ssc5d	A430110N23Rik|S5D-SRCRB	scavenger receptor cysteine rich family, 5 domains	protein-coding	0.005000	0.542289	
mm_121794.1	chr14	20082969	20083169	-	1	NA	NA	NA	103	NM_026209	67509	Mm.292423	NM_026209	ENSMUSG00000045107	Saysd1	1810063B07Rik|4930488P03Rik	SAYSVFN motif domain containing 1	protein-coding	0.120000	0.711443	
mm_50642.1	chr6	51432631	51432831	+	1	NA	NA	NA	61	NM_010903	18025	Mm.42138	NM_010903	ENSMUSG00000029832	Nfe2l3	Nrf3	nuclear factor, erythroid derived 2, like 3	protein-coding	0.060000	0.666667	
mm_65482.1	chr7	25615780	25615980	-	1	NA	NA	NA	12	NM_001039243	632778	Mm.423112	NM_001039243	ENSMUSG00000074261	Erich4	EG632778|Gm7092|Kseg1	glutamate rich 4	protein-coding	0.015000	0.587065	
mm_162716.1	chr10	34019296	34019496	-	1	NA	NA	NA	220	NM_025614	66521	Mm.28528	NM_025614	ENSMUSG00000019782	Rwdd1	0710001K08Rik|2610002D06Rik|2700069A07Rik|IH1	RWD domain containing 1	protein-coding	0.110000	0.691542	
mm_15534.1	chr2	158382978	158383178	+	1	NA	NA	NA	7440	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.025000	0.427861	
mm_112184.1	chr12	113422300	113422500	-	1	NA	NA	NA	-67165	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.552239	
mm_56970.1	chr6	120188351	120188551	-	1	NA	NA	NA	-5372	NM_001347432	29862	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.045000	0.601990	
mm_30952.1	chr4	33247863	33248063	+	1	NA	NA	NA	824	NM_001033225	108767	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.115000	0.726368	
mm_43030.1	chr5	123930597	123930797	+	1	NA	NA	NA	8	NM_001134767	208908	Mm.243679	NM_001134767	ENSMUSG00000061882	Ccdc62	AI661708|Gm150	coiled-coil domain containing 62	protein-coding	0.145000	0.726368	
mm_78232.1	chr9	21616038	21616238	+	1	NA	NA	NA	-31	NM_011417	20586	Mm.286593	NM_011417	ENSMUSG00000032187	Smarca4	Brg1|HP1-BP72|SNF2beta|SW1/SNF|b2b508.1Clo|b2b692Clo	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4	protein-coding	0.130000	0.751244	
mm_155396.1	chrX	72957263	72957463	+	1	NA	NA	NA	-29976	NM_009549	22673	Mm.1161	NM_009549	ENSMUSG00000031351	Zfp185	P1|Znf185	zinc finger protein 185	protein-coding	0.015000	0.492537	
mm_93648.1	chr10	117361083	117361283	-	1	NA	NA	NA	15790	NM_001013391	432508	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.025000	0.641791	
mm_21892.1	chr2	166155454	166155654	-	1	NA	NA	NA	129	NM_001252579	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.090000	0.606965	
mm_19766.1	chr2	105399306	105399506	-	1	NA	NA	NA	-87	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0.115000	0.721393	
mm_130150.1	chr15	91050131	91050331	-	1	NA	NA	NA	-280	NM_001109040	16564	Mm.41379	NM_016705	ENSMUSG00000022629	Kif21a	-	kinesin family member 21A	protein-coding	0.040000	0.522388	
mm_115743.1	chr13	17893080	17893280	-	1	NA	NA	NA	51037	NM_019491	56044	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0.035000	0.502488	
mm_38545.1	chr4	141599848	141600048	-	1	NA	NA	NA	-24	NM_001163256	74202	Mm.490327	NM_133754	ENSMUSG00000006219	Fblim1	2410043F08Rik|Cal|Fblp1|Gt10|migfilin|migfilin(s)	filamin binding LIM protein 1	protein-coding	0.115000	0.771144	-6(CCTTTTATGGTA,+,0.00)
mm_65799.1	chr7	28948712	28948912	-	1	NA	NA	NA	13468	NM_021895	60595	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.025000	0.537313	
mm_64729.1	chr7	4684880	4685080	-	1	NA	NA	NA	-17	NM_024172	66245	Mm.6803	NM_024172	ENSMUSG00000063802	Hspbp1	1500019G21Rik	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	protein-coding	0.055000	0.577114	
mm_92795.1	chr10	81350179	81350379	-	1	NA	NA	NA	147	NM_001163165	15353	Mm.38474	NM_010440	ENSMUSG00000020232	Hmg20b	AW610687|BRAF35|Hmgx2|Hmgxb2|Smarce1r	high mobility group 20B	protein-coding	0.120000	0.761194	
mm_69202.1	chr7	127387072	127387272	-	1	NA	NA	NA	-6	NM_030226	78921	Mm.200950	NM_030226	ENSMUSG00000030823	9130019O22Rik	-	RIKEN cDNA 9130019O22 gene	protein-coding	0.025000	0.492537	
mm_124176.1	chr14	93841564	93841764	-	1	NA	NA	NA	47224	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.020000	0.452736	
mm_9313.1	chr1	171645788	171645988	-	1	NA	NA	NA	3111	NM_001347184	75345	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	0.000000	0.437811	
mm_103213.1	chr11	70654508	70654708	-	1	NA	NA	NA	42	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.095000	0.706468	
mm_121808.1	chr14	20347971	20348171	-	1	NA	NA	NA	50	NM_027475	70601	Mm.35105	NM_027475	ENSMUSG00000021810	Ecd	5730461K03Rik|Hsgt1	ecdysoneless homolog (Drosophila)	protein-coding	0.085000	0.606965	
mm_94947.1	chr11	29719044	29719244	+	1	NA	NA	NA	581	NM_024226	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.015000	0.338308	
mm_146594.1	chr18	9437366	9437566	-	1	NA	NA	NA	12684	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.000000	0.472637	
mm_142774.1	chr17	49821715	49821915	-	1	NA	NA	NA	206643	NM_177052	319991	Mm.441340	NM_177052	ENSMUSG00000023999	Kif6	D130004B10Rik|D130084M03Rik	kinesin family member 6	protein-coding	0.015000	0.407960	
mm_118982.1	chr14	28387721	28387921	+	1	NA	NA	NA	-117652	NM_009524	22418	Mm.287544	NM_009524	ENSMUSG00000021994	Wnt5a	8030457G12Rik|Wnt-5a	wingless-type MMTV integration site family, member 5A	protein-coding	0.000000	0.368159	-54(CTTTTAATACTG,+,0.00)
mm_144643.1	chr18	33181874	33182074	+	1	NA	NA	NA	31888	NM_001347624	170459	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	0.020000	0.472637	
mm_112230.1	chr12	113482157	113482357	-	1	NA	NA	NA	-7308	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.467662	
mm_33160.1	chr4	125948033	125948233	+	1	NA	NA	NA	-25823	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	0.000000	0.452736	
mm_117057.1	chr13	58402361	58402561	-	1	NA	NA	NA	51	NM_001301345	15387	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.095000	0.631841	
mm_104213.1	chr11	88342464	88342664	-	1	NA	NA	NA	-10209	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	0.025000	0.348259	
mm_119979.1	chr14	55575451	55575651	+	1	NA	NA	NA	-123	NM_026808	68680	Mm.36758	NM_026808	ENSMUSG00000022215	Fitm1	1110028A07Rik|AV010547|Cg10671|Fit1	fat storage-inducing transmembrane protein 1	protein-coding	0.010000	0.621891	
mm_78704.1	chr9	41376299	41376499	+	1	NA	NA	NA	-127	NR_040725	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	3110039I08Rik	2610203C20Rik|AI848448|D230004N17Rik|D3Mgi9|Mir100hg	RIKEN cDNA 3110039I08 gene	ncRNA	0.045000	0.542289	
mm_150364.1	chr19	34649268	34649468	+	1	NA	NA	NA	8479	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.000000	0.293532	
mm_137283.1	chr17	24728272	24728472	+	1	NA	NA	NA	543	NM_001163945	66211	Mm.46198	NM_025425	ENSMUSG00000002500	Rpl3l	1110057H16Rik	ribosomal protein L3-like	protein-coding	0.045000	0.626866	
mm_6660.1	chr1	80213840	80214040	-	1	NA	NA	NA	4	NM_173425	241128	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding	0.035000	0.482587	
mm_170792.1	chr2	175175747	175175947	-	1	NA	NA	NA	31070	NM_001164689	626832	Mm.441314	NM_001164689	ENSMUSG00000078887	Gm6710	1600017I02Rik|2310011F05Rik|2900089K14Rik|3100002L24Rik|WF-4	predicted gene 6710	protein-coding	0.020000	0.507463	
mm_13523.1	chr2	110017740	110017940	+	1	NA	NA	NA	23	NM_026613	68201	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	0.135000	0.706468	
mm_66022.1	chr7	30605101	30605301	-	1	NA	NA	NA	7533	NM_026815	109637	Mm.25471	NM_026815	ENSMUSG00000006313	Upk1a	1110031P12Rik|AU019298|C87192|Tspan21|Upk1	uroplakin 1A	protein-coding	0.025000	0.567164	
mm_132758.1	chr16	44394716	44394916	+	1	NA	NA	NA	17	NM_001033247	212517	Mm.327888	NM_001033247	ENSMUSG00000071550	Cfap44	6330444M21Rik|D16Ertd642e|Gm1750|Wdr52	cilia and flagella associated protein 44	protein-coding	0.050000	0.582090	
mm_46790.1	chr5	112767204	112767404	-	1	NA	NA	NA	-25988	NR_040675	67360	Mm.59218	NR_040675	ENSMUSG00000098230	1700095B10Rik	-	RIKEN cDNA 1700095B10 gene	ncRNA	0.000000	0.452736	
mm_62495.1	chr7	101970059	101970259	+	1	NA	NA	NA	316	NM_133947	101706	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	0.120000	0.776119	
mm_156271.1	chrX	136833308	136833508	+	1	NA	NA	NA	10662	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.010000	0.462687	
mm_44784.1	chr5	32135109	32135309	-	1	NA	NA	NA	-1263	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.140000	0.671642	
mm_65232.1	chr7	19733063	19733263	-	1	NA	NA	NA	16410	NM_008990	19294	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.025000	0.582090	
mm_93653.1	chr10	117411155	117411355	-	1	NA	NA	NA	-34282	NM_001310609	432508	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.015000	0.552239	-26(AACTATAAAAGG,-,0.00)
mm_161399.1	chr14	118922970	118923170	-	1	NA	NA	NA	97	NR_130725	66573	Mm.87456	NM_025943	ENSMUSG00000042156	Dzip1	2510025K24Rik|2810422M04Rik	DAZ interacting protein 1	protein-coding	0.115000	0.746269	
mm_10595.1	chr2	18676928	18677128	+	1	NA	NA	NA	10	NM_007552	12151	Mm.289584	NM_007552	ENSMUSG00000026739	Bmi1	AW546694|Bmi-1|Pcgf4	Bmi1 polycomb ring finger oncogene	protein-coding	0.100000	0.676617	-3(TAGTATTAAAGG,-,0.00)
mm_27781.1	chr3	73708276	73708476	-	1	NA	NA	NA	39	NM_009738	12038	Mm.250719	NM_009738	ENSMUSG00000027792	Bche	C730038G20Rik	butyrylcholinesterase	protein-coding	0.035000	0.577114	
mm_33159.1	chr4	125836825	125837025	+	1	NA	NA	NA	85385	NR_015560	72395	Mm.112888	NR_015560	ENSMUSG00000085562	2610028E06Rik	BB043107	RIKEN cDNA 2610028E06 gene	ncRNA	0.010000	0.492537	63(TCTTTTATGTGC,+,0.00)
mm_6062.1	chr1	60566632	60566832	-	1	NA	NA	NA	33	NM_001045513	77300	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0.165000	0.796020	
mm_79578.1	chr9	58134821	58135021	+	1	NA	NA	NA	256	NM_001162479	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.015000	0.462687	
mm_12123.1	chr2	61626869	61627069	+	1	NA	NA	NA	33872	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.025000	0.363184	
mm_41448.1	chr5	90905293	90905493	+	1	NA	NA	NA	1494	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.010000	0.248756	38(TCTTAAAAGGTC,+,0.00)
mm_55473.1	chr6	68807649	68807849	-	1	NA	NA	NA	519425	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.368159	-25(TTGTTTTAAAGC,-,0.00)
mm_37515.1	chr4	123917172	123917372	-	1	NA	NA	NA	-161	NM_017475	54170	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.095000	0.701493	
mm_58845.1	chr7	16842931	16843131	+	1	NA	NA	NA	-34	NM_178900	101540	Mm.1881	NM_178900	ENSMUSG00000041187	Prkd2	AI325941|PKD2	protein kinase D2	protein-coding	0.075000	0.621891	
mm_130420.1	chr15	98093013	98093213	-	1	NA	NA	NA	456	NM_144851	223870	Mm.384023	NM_144851	ENSMUSG00000033075	Senp1	2310046A20Rik|D15Ertd528e|E330036L07Rik|suPr-2	SUMO1/sentrin specific peptidase 1	protein-coding	0.100000	0.746269	
mm_116446.1	chr13	43154717	43154917	-	1	NA	NA	NA	16684	NM_001252639	67046	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	0.035000	0.502488	
mm_142685.1	chr17	47733749	47733949	-	1	NA	NA	NA	-3188	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.015000	0.507463	
mm_80580.1	chr9	84053073	84053273	+	1	NA	NA	NA	104392	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.005000	0.288557	
mm_145252.1	chr18	52488277	52488477	+	1	NA	NA	NA	22684	NM_026040	67222	Mm.100617	NM_026040	ENSMUSG00000024528	Srfbp1	2810036K01Rik|p49/STRAP	serum response factor binding protein 1	protein-coding	0.025000	0.512438	
mm_9463.1	chr1	172894956	172895156	-	1	NA	NA	NA	-2	NM_011318	20219	Mm.330510	NM_011318	ENSMUSG00000026542	Apcs	Sap	serum amyloid P-component	protein-coding	0.010000	0.412935	
mm_52244.1	chr6	105677681	105677881	+	1	NA	NA	NA	36	NM_173004	269784	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding	0.065000	0.621891	
mm_164960.1	chr19	5799410	5799610	-	1	NA	NA	NA	3162	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.000000	0.288557	-92(GCTTTTATATTA,+,0.00)
mm_110217.1	chr12	28623283	28623483	-	1	NA	NA	NA	-53	NM_027866	71693	Mm.30724	NM_027866	ENSMUSG00000036655	Colec11	CL-K1	collectin sub-family member 11	protein-coding	0.010000	0.587065	
mm_23733.1	chr3	69029356	69029556	+	1	NA	NA	NA	15286	NM_025863	66949	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.010000	0.353234	-83(GGCCATAAATGC,-,0.00),-65(ATCTTTATAGGG,-,0.00)
mm_84565.1	chr9	68569155	68569355	-	1	NA	NA	NA	-49055	NR_040737	74951	Mm.60678	NR_040737	ENSMUSG00000111303	4930502A04Rik	-	RIKEN cDNA 4930502A04 gene	ncRNA	0.005000	0.393035	
mm_41925.1	chr5	105651242	105651442	+	1	NA	NA	NA	-48627	NM_001122768	231549	Mm.23837	NM_178701	ENSMUSG00000046079	Lrrc8d	2810473G09Rik|4930525N13Rik|A930019F03|Lrrc5	leucine rich repeat containing 8D	protein-coding	0.020000	0.507463	
mm_115157.1	chr13	107063577	107063777	+	1	NA	NA	NA	41107	NR_015471	100040322	Mm.133867	NR_015471		3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.020000	0.447761	
mm_39125.1	chr4	155043058	155043258	-	1	NA	NA	NA	-23872	NM_001042407	668173	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0.140000	0.761194	
mm_54197.1	chr6	24653572	24653772	-	1	NA	NA	NA	11323	NM_001167745	73178	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0.000000	0.283582	
mm_171624.1	chr4	155670453	155670653	+	1	NA	NA	NA	-1299	NM_001256107	76580	Mm.235738	NM_145124	ENSMUSG00000029060	Mib2	2210008I11Rik|Zzank1|skd	mindbomb E3 ubiquitin protein ligase 2	protein-coding	0.015000	0.517413	
mm_166963.1	chr7	44480567	44480767	+	1	NA	NA	NA	-3850	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.467662	
mm_14016.1	chr2	122150486	122150686	+	1	NA	NA	NA	2899	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.015000	0.482587	53(CCTTAAAAATCC,+,0.00)
mm_15855.1	chr2	164785873	164786073	+	1	NA	NA	NA	-48	NM_133924	101113	Mm.295647	NM_133924	ENSMUSG00000050373	Snx21	5730407K14Rik|AI481716	sorting nexin family member 21	protein-coding	0.100000	0.781095	
mm_42409.1	chr5	115053365	115053565	+	1	NA	NA	NA	41941	NM_029012	74585	Mm.355894	NM_029012	ENSMUSG00000029550	Sppl3	4833416I09Rik|Psl4|Usmg3	signal peptide peptidase 3	protein-coding	0.015000	0.437811	
mm_6479.1	chr1	74070121	74070321	-	1	NA	NA	NA	54226	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.010000	0.567164	
mm_158352.1	chrX	134583032	134583232	-	1	NA	NA	NA	8	NM_013482	12229	Mm.4475	NM_013482	ENSMUSG00000031264	Btk	AI528679|xid	Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.015000	0.477612	
mm_91134.1	chr10	19609135	19609335	-	1	NA	NA	NA	-12793	NM_178258	237310	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	0.025000	0.512438	
mm_155932.1	chrX	103493478	103493678	+	1	NA	NA	NA	20	NR_015508	70252	Mm.380486	NR_015508	ENSMUSG00000097571	Jpx	2010000I03Rik|2510040I06Rik|Enox	Jpx transcript, Xist activator (non-protein coding)	ncRNA	0.080000	0.621891	
mm_130215.1	chr15	95654718	95654918	-	1	NA	NA	NA	-47	NM_207533	223843	Mm.152937	NM_207533	ENSMUSG00000045608	Dbx2	9430056A22Rik|9630005K15|AI846217|Gm1229	developing brain homeobox 2	protein-coding	0.030000	0.606965	
mm_158541.1	chrX	143933119	143933319	-	1	NA	NA	NA	0	NM_010025	13193	Mm.12871	NM_010025	ENSMUSG00000031285	Dcx	Dbct	doublecortin	protein-coding	0.010000	0.442786	
mm_87516.1	chr10	52690480	52690680	+	1	NA	NA	NA	79	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding	0.080000	0.651741	
mm_44104.1	chr5	149367499	149367699	+	1	NA	NA	NA	-44207	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.005000	0.457711	
mm_150126.1	chr19	30030325	30030525	+	1	NA	NA	NA	-88	NM_144873	109113	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0.100000	0.691542	
mm_52729.1	chr6	120364029	120364229	+	1	NA	NA	NA	30	NM_145997	214899	Mm.404761	NM_145997	ENSMUSG00000030180	Kdm5a	AA409370|C76986|Jarid1a|RBP2|Rbbp2	lysine (K)-specific demethylase 5A	protein-coding	0.115000	0.671642	
mm_78457.1	chr9	32372371	32372571	+	1	NA	NA	NA	53	NM_019659	56379	Mm.390168	NM_019659	ENSMUSG00000041248	Kcnj1	Kir1.1|ROMK|Romk2	potassium inwardly-rectifying channel, subfamily J, member 1	protein-coding	0.010000	0.472637	
mm_93973.1	chr10	127311652	127311852	-	1	NA	NA	NA	34	NM_001003913	216443	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	0.095000	0.606965	
mm_151977.1	chr19	5826865	5827065	-	1	NA	NA	NA	18513	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.005000	0.398010	
mm_83684.1	chr9	50504700	50504900	-	1	NA	NA	NA	5	NR_040714	69631	Mm.414996	NR_040714	ENSMUSG00000101304	Plet1os	2310014F07Rik	placenta expressed transcript 1, opposite strand	ncRNA	0.010000	0.457711	
mm_49352.1	chr6	21986348	21986548	+	1	NA	NA	NA	538	NM_001081351	214642	Mm.221404	NM_001081351	ENSMUSG00000062980	Cped1	6720481P07|A430107O13Rik|AI552584	cadherin-like and PC-esterase domain containing 1	protein-coding	0.050000	0.522388	
mm_55274.1	chr6	54039790	54039990	-	1	NA	NA	NA	-42	NM_001163640	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.125000	0.721393	
mm_44644.1	chr5	28209724	28209924	-	1	NA	NA	NA	344	NM_001310511	269637	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.100000	0.706468	
mm_60528.1	chr7	44480062	44480262	+	1	NA	NA	NA	-4355	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.452736	
mm_56685.1	chr6	113910448	113910648	-	1	NA	NA	NA	-19009	NM_001036684	11941	Mm.321755	NM_009723	ENSMUSG00000030302	Atp2b2	D6Abb2e|Gena300|PMCA2|Tmy|dfw|jog|wms|wri	ATPase, Ca++ transporting, plasma membrane 2	protein-coding	0.005000	0.587065	
mm_3255.1	chr1	136162847	136163047	+	1	NA	NA	NA	31546	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.030000	0.577114	
mm_13015.1	chr2	90964997	90965197	+	1	NA	NA	NA	24700	NM_017368	13046	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	0.020000	0.497512	
mm_134706.1	chr16	22886985	22887185	-	1	NA	NA	NA	-4930	NR_075099	11625	Mm.197554	NM_013465	ENSMUSG00000022868	Ahsg	-	alpha-2-HS-glycoprotein	protein-coding	0.020000	0.462687	
mm_17796.1	chr2	33131552	33131752	-	1	NA	NA	NA	-44448	NM_178888	99326	Mm.41290	NM_178888	ENSMUSG00000038860	Garnl3	AW120551	GTPase activating RANGAP domain-like 3	protein-coding	0.045000	0.611940	
mm_44281.1	chr5	7800789	7800989	-	1	NA	NA	NA	-159583	NM_054098	117167	Mm.31403	NM_054098	ENSMUSG00000012428	Steap4	1110021O17Rik|AI481214|Tiarp|Tnfaip9	STEAP family member 4	protein-coding	0.000000	0.328358	
mm_3380.1	chr1	139454735	139454935	+	1	NA	NA	NA	62	NM_009791	12316	Mm.168523	NM_009791	ENSMUSG00000033952	Aspm	Calmbp1|D330028K02Rik|MCPH5|Sha1	asp (abnormal spindle)-like, microcephaly associated (Drosophila)	protein-coding	0.075000	0.601990	
mm_30932.1	chr4	32983196	32983396	+	1	NA	NA	NA	298	NM_027491	52187	Mm.300814	NM_027491	ENSMUSG00000028278	Rragd	5730543C08Rik|AI467523|C030003H22Rik|D4Ertd174e	Ras-related GTP binding D	protein-coding	0.075000	0.671642	
mm_111519.1	chr12	99965562	99965762	-	1	NA	NA	NA	1163	NM_001164427	217826	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.090000	0.631841	
mm_22605.1	chr3	14506352	14506552	+	1	NA	NA	NA	25753	NM_080852	140918	Mm.215250	NM_080852	ENSMUSG00000039710	Slc7a12	Asc-2|XAT1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 12	protein-coding	0.005000	0.373134	
mm_36560.1	chr4	87161587	87161787	-	1	NA	NA	NA	66276	NM_001110240	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	0.020000	0.432836	
mm_73540.1	chr8	108703991	108704191	+	1	NA	NA	NA	-10553	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.175000	0.815920	
mm_162747.1	chr10	57788226	57788426	+	1	NA	NA	NA	3403	NM_021272	12140	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.005000	0.293532	50(CTTTTTATAGAA,+,0.00)
mm_106263.1	chr11	117968104	117968304	-	1	NA	NA	NA	1162	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.100000	0.686567	
mm_134169.1	chr16	10796313	10796513	-	1	NA	NA	NA	410	NM_013637	19118	Mm.42733	NM_013637	ENSMUSG00000022501	Prm1	Prm-1	protamine 1	protein-coding	0.020000	0.422886	
mm_31958.1	chr4	86874326	86874526	+	1	NA	NA	NA	12	NM_139306	230379	Mm.45019	NM_139306	ENSMUSG00000038007	Acer2	2410116I05Rik|Asah3l|CRG-L1|maCER2	alkaline ceramidase 2	protein-coding	0.115000	0.741294	
mm_28584.1	chr3	94375139	94375339	-	1	NA	NA	NA	-2193	NM_001293734	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.005000	0.457711	
mm_81991.1	chr9	121460162	121460362	+	1	NA	NA	NA	35432	NM_001284508	12424	Mm.2619	NM_031161	ENSMUSG00000032532	Cck	-	cholecystokinin	protein-coding	0.005000	0.552239	
mm_69734.1	chr7	140881764	140881964	-	1	NA	NA	NA	5	NM_001127351	64384	Mm.29760	NM_022433	ENSMUSG00000025486	Sirt3	2310003L23Rik|AI848213|Sir2l3	sirtuin 3	protein-coding	0.105000	0.711443	
mm_87463.1	chr10	51485391	51485591	+	1	NA	NA	NA	4879	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.000000	0.427861	-49(CCCTAAATGGAG,+,0.00)
mm_138504.1	chr17	35232910	35233110	+	1	NA	NA	NA	-2000	NM_001347351	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.015000	0.472637	-32(TGGTATATAAAG,-,0.00),64(CTCTCTTTAAGC,-,0.00)
mm_26680.1	chr3	155514353	155514553	+	1	NA	NA	NA	421019	NM_028938	74435	Mm.195711	NM_028938	ENSMUSG00000028182	Lrriq3	4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44	leucine-rich repeats and IQ motif containing 3	protein-coding	0.010000	0.502488	-18(CCATAAAGAGTC,+,0.00)
mm_69582.1	chr7	135704321	135704521	-	1	NA	NA	NA	11958	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.020000	0.412935	81(AGGTATATAGGG,-,0.00)
mm_158104.1	chrX	102042446	102042646	-	1	NA	NA	NA	28761	NM_001278534	331474	Mm.23297	NM_183318	ENSMUSG00000049191	Rgag4	6430402L03Rik|Mar5|Mart5|mKIAA2001	retrotransposon gag domain containing 4	protein-coding	0.010000	0.522388	88(AGCTCTAAATGG,-,0.00)
mm_167203.1	chr7	143548286	143548486	+	1	NA	NA	NA	442	NM_001285490	17955	Mm.294625	NM_008672	ENSMUSG00000059119	Nap1l4	2810410H14Rik|AI316776|D7Wsu30e|Nap2	nucleosome assembly protein 1-like 4	protein-coding	0.060000	0.482587	
mm_137827.1	chr17	30651559	30651759	+	1	NA	NA	NA	24723	NM_013811	13417	Mm.426017	NM_013811	ENSMUSG00000033826	Dnah8	ATPase|Dnahc8|Hst6.7b|P1-Loop	dynein, axonemal, heavy chain 8	protein-coding	0.005000	0.422886	
mm_151539.1	chr19	59081344	59081544	+	1	NA	NA	NA	-5375	NM_001114312	71653	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Kiaa1598|Shootin1|mKIAA1598	shootin 1	protein-coding	0.005000	0.502488	
mm_89784.1	chr10	102079582	102079782	+	1	NA	NA	NA	-79176	NM_001162368	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.005000	0.348259	
mm_24897.1	chr3	96172419	96172619	+	1	NA	NA	NA	13	NM_153053	107701	Mm.219671	NM_153053	ENSMUSG00000068856	Sf3b4	SF3b49|SF3b50|Sap49	splicing factor 3b, subunit 4	protein-coding	0.095000	0.676617	
mm_82485.1	chr9	18467935	18468135	-	1	NA	NA	NA	5524	NM_028935	72230	Mm.289689	NM_028935	ENSMUSG00000074500	Zfp558	1700007A21Rik|4932704I17Rik|Zfp558-ps	zinc finger protein 558	protein-coding	0.015000	0.467662	
mm_118029.1	chr13	101547984	101548184	-	1	NA	NA	NA	144546	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.030000	0.492537	
mm_50678.1	chr6	51545418	51545618	+	1	NA	NA	NA	995	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.035000	0.497512	
mm_39805.1	chr5	30623413	30623613	+	1	NA	NA	NA	-24423	NR_049199	100885838		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.005000	0.407960	
mm_47879.1	chr5	134702965	134703165	-	1	NA	NA	NA	-14475	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.015000	0.582090	
mm_96580.1	chr11	69070769	69070969	+	1	NA	NA	NA	60	NM_028336	66910	Mm.33964	NM_025838	ENSMUSG00000020895	Tmem107	1110004B13Rik|2810049P21Rik	transmembrane protein 107	protein-coding	0.085000	0.651741	
mm_86863.1	chr10	21993445	21993645	+	1	NA	NA	NA	-345	NM_001161850	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.030000	0.512438	
mm_148451.1	chr19	3986472	3986672	+	1	NA	NA	NA	2	NM_001302482	71670	Mm.29735	NM_027857	ENSMUSG00000024866	Acy3	0610006H10Rik|AA3|AAIII|AW107362|Acy-3|HCBP1	aspartoacylase (aminoacylase) 3	protein-coding	0.025000	0.611940	-35(GCCTATAAATAC,-,0.00)
mm_162390.1	chr1	75636938	75637138	+	1	NA	NA	NA	90772	NM_009208	20536	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	0.020000	0.562189	
mm_142967.1	chr17	56121876	56122076	-	1	NA	NA	NA	-30	NM_029796	76905	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0.005000	0.537313	36(GACTATATAAAG,-,0.00),38(CTATATAAAGCC,+,0.00)
mm_42054.1	chr5	108669234	108669434	+	1	NA	NA	NA	5462	NM_001310692	231583	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0.100000	0.631841	-16(CCGCCTAAAAAG,-,0.00)
mm_109239.1	chr12	108894196	108894396	+	1	NA	NA	NA	24	NM_177602	212198	Mm.342082	NM_177602	ENSMUSG00000040877	Wdr25	B930090D16Rik	WD repeat domain 25	protein-coding	0.090000	0.666667	
mm_28575.1	chr3	93445283	93445483	-	1	NA	NA	NA	3053	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.055000	0.572139	
mm_172098.1	chr6	27554147	27554347	+	1	NA	NA	NA	382503	NR_030420	735266		NR_030420	ENSMUSG00000076067	Mir592	Mirn592|mir-592|mmu-mir-592	microRNA 592	ncRNA	0.035000	0.487562	
mm_82336.1	chr9	9269277	9269477	-	1	NA	NA	NA	-30364	NM_027823	71544	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0.005000	0.507463	
mm_130639.1	chr15	100495159	100495359	-	1	NA	NA	NA	-20	NM_153407	207785	Mm.294969	NM_153407	ENSMUSG00000044636	Csrnp2	CSRNP-2|Csnrp2|taip-12	cysteine-serine-rich nuclear protein 2	protein-coding	0.105000	0.721393	-38(GCGCCTATAAGA,-,0.00),-36(GCCTATAAGAGG,-,0.00)
mm_55766.1	chr6	78466787	78466987	-	1	NA	NA	NA	1987	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.005000	0.482587	
mm_50789.1	chr6	54039571	54039771	+	1	NA	NA	NA	-261	NM_001163640	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.115000	0.706468	
mm_123777.1	chr14	70323649	70323849	-	1	NA	NA	NA	24684	NM_001135152	213053	Mm.270647	NM_144808	ENSMUSG00000022094	Slc39a14	FAD-123|ZIP-14|Zip14|fad123	solute carrier family 39 (zinc transporter), member 14	protein-coding	0.030000	0.567164	-73(TCTTTAATGGGC,+,0.00)
mm_92898.1	chr10	83316635	83316835	-	1	NA	NA	NA	21082	NM_177388	338365	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.015000	0.353234	
mm_109874.1	chr12	4916609	4916809	-	1	NA	NA	NA	-644	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.015000	0.378109	
mm_74616.1	chr8	12779521	12779721	-	1	NA	NA	NA	22605	NM_001293667	50770	Mm.257837	NM_015804	ENSMUSG00000031441	Atp11a	4930558F19Rik|AU040868|Atpc1h|Ih	ATPase, class VI, type 11A	protein-coding	0.005000	0.472637	-34(TTGTATATAAAG,-,0.00)
mm_131304.1	chr16	11420635	11420835	+	1	NA	NA	NA	15087	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.005000	0.522388	
mm_43377.1	chr5	135674482	135674682	+	1	NA	NA	NA	-14563	NM_008898	18984	Mm.3863	NM_008898	ENSMUSG00000005514	Por	4933424M13Rik|CPR|CYPOR|P450R	P450 (cytochrome) oxidoreductase	protein-coding	0.010000	0.507463	
mm_81731.1	chr9	113741361	113741561	+	1	NA	NA	NA	-12	NM_001286599	76499	Mm.222272	NM_029633	ENSMUSG00000033392	Clasp2	1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627	CLIP associating protein 2	protein-coding	0.145000	0.771144	
mm_131501.1	chr16	17406182	17406382	+	1	NA	NA	NA	32	NM_001001983	224020	Mm.5718	NM_001001983	ENSMUSG00000041720	Pi4ka	Pik4ca	phosphatidylinositol 4-kinase, catalytic, alpha polypeptide	protein-coding	0.090000	0.651741	
mm_866.1	chr1	52150839	52151039	+	1	NA	NA	NA	31317	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.035000	0.606965	
mm_19558.1	chr2	98666993	98667193	-	1	NA	NA	NA	1199436	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.025000	0.363184	
mm_153278.1	chr19	37205842	37206042	-	1	NA	NA	NA	1529	NM_198300	208922	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.015000	0.303483	
mm_11621.1	chr2	34772626	34772826	+	1	NA	NA	NA	636	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.070000	0.547264	
mm_39048.1	chr4	153030380	153030580	-	1	NA	NA	NA	332940	NR_033138	330004	Mm.291863	NM_001033414		Gm833	-	predicted gene 833	ncRNA	0.020000	0.542289	
mm_30145.1	chr3	142430081	142430281	-	1	NA	NA	NA	-34485	NM_019808	56376	Mm.117709	NM_019808	ENSMUSG00000028273	Pdlim5	1110001A05Rik|AI987914|C87059|Enh|Enh1|Enh2|Enh3|LIM	PDZ and LIM domain 5	protein-coding	0.000000	0.427861	45(CTCTTTAAAAAG,-,0.00)
mm_2098.1	chr1	87766010	87766210	+	1	NA	NA	NA	10099	NM_001205392	77040	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.000000	0.412935	
mm_12839.1	chr2	82053201	82053401	+	1	NA	NA	NA	-357	NM_175513	241514	Mm.119383	NM_175513	ENSMUSG00000070866	Zfp804a	C630007C17Rik|Znf804a	zinc finger protein 804A	protein-coding	0.085000	0.676617	
mm_30763.1	chr4	15958483	15958683	+	1	NA	NA	NA	616	NM_013752	27354	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	0.030000	0.422886	
mm_169160.1	chr13	65348526	65348726	-	1	NA	NA	NA	69772	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.025000	0.542289	
mm_17442.1	chr2	28466213	28466413	-	1	NA	NA	NA	11	NM_027040	69327	Mm.46470	NM_027040	ENSMUSG00000026831	1700007K13Rik	Rbest47	RIKEN cDNA 1700007K13 gene	protein-coding	0.040000	0.577114	
mm_15189.1	chr2	154202525	154202725	+	1	NA	NA	NA	2245	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.025000	0.587065	
mm_48155.1	chr5	137152076	137152276	-	1	NA	NA	NA	-35969	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.487562	
mm_32127.1	chr4	99037397	99037597	+	1	NA	NA	NA	6543	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.025000	0.472637	
mm_142079.1	chr17	35702122	35702322	-	1	NA	NA	NA	-178	NM_001198831	12305	Mm.5021	NM_007584	ENSMUSG00000003534	Ddr1	6030432F18|AI323681|CD167a|Cak|Nep|PTK3A	discoidin domain receptor family, member 1	protein-coding	0.035000	0.616915	
mm_38505.1	chr4	141115559	141115759	-	1	NA	NA	NA	24137	NR_102344	213491	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0.030000	0.611940	
mm_47930.1	chr5	135063990	135064190	-	1	NA	NA	NA	-116	NM_025362	66114	Mm.178012	NM_025362	ENSMUSG00000061118	Dnajc30	1300007M11Rik|Wbscr18	DnaJ heat shock protein family (Hsp40) member C30	protein-coding	0.095000	0.616915	
mm_121123.1	chr14	101840540	101840740	+	1	NA	NA	NA	17	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.040000	0.437811	19(CTTTTTATGCTC,+,0.00)
mm_126379.1	chr15	80173117	80173317	+	1	NA	NA	NA	-504	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.045000	0.597015	
mm_104315.1	chr11	93885663	93885863	-	1	NA	NA	NA	3	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.135000	0.726368	
mm_42249.1	chr5	113945426	113945626	+	1	NA	NA	NA	-36820	NM_011779	23790	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837	coronin, actin binding protein 1C	protein-coding	0.000000	0.447761	
mm_139875.1	chr17	70747211	70747411	+	1	NA	NA	NA	99466	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.000000	0.298507	-45(GTTTTTAAATCC,+,0.00)
mm_149511.1	chr19	11976892	11977092	+	1	NA	NA	NA	11148	NM_001033174	76303	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.000000	0.373134	
mm_13357.1	chr2	103423966	103424166	+	1	NA	NA	NA	-2	NM_010125	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.045000	0.537313	
mm_112242.1	chr12	113482398	113482598	-	1	NA	NA	NA	-7067	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.000000	0.527363	
mm_148174.1	chr18	78123231	78123431	-	1	NA	NA	NA	95	NM_001171010	108052	Mm.33832	NM_028122	ENSMUSG00000059336	Slc14a1	2610507K20Rik|3021401A05Rik|UT-B|Utb1	solute carrier family 14 (urea transporter), member 1	protein-coding	0.030000	0.557214	-33(GGGTATAAAAGG,-,0.00),23(CCGTTTAAAAGA,-,0.00)
mm_68571.1	chr7	115724908	115725108	-	1	NA	NA	NA	76601	NM_001277328	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.000000	0.338308	
mm_134410.1	chr16	17680522	17680722	-	1	NA	NA	NA	34152	NM_001166164	72315	Mm.297777	NM_001166164	ENSMUSG00000041617	Ccdc74a	2310015A05Rik	coiled-coil domain containing 74A	protein-coding	0.015000	0.631841	
mm_103718.1	chr11	79530297	79530497	-	1	NA	NA	NA	212	NM_146023	101488212	Mm.439665	NM_146023	ENSMUSG00000070354	Gm21975	Evi2a-evi2b	predicted gene 21975	protein-coding	0.020000	0.442786	-84(CTCTTTAAAAAA,-,0.00)
mm_158190.1	chrX	104670709	104670909	-	1	NA	NA	NA	255	NM_175358	108672	Mm.30574	NM_175358	ENSMUSG00000033906	Zdhhc15	6030457O13Rik	zinc finger, DHHC domain containing 15	protein-coding	0.105000	0.696517	
mm_69707.1	chr7	140101913	140102113	-	1	NA	NA	NA	428	NM_001286217	69064	Mm.41915	NM_026928	ENSMUSG00000025466	Fuom	Fucu|Le51	fucose mutarotase	protein-coding	0.035000	0.562189	
mm_67494.1	chr7	80751618	80751818	-	1	NA	NA	NA	51613	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.005000	0.452736	85(GCTTTTAGAGTT,+,0.00)
mm_20854.1	chr2	148403841	148404041	-	1	NA	NA	NA	4247	NM_009378	21824	Mm.24096	NM_009378	ENSMUSG00000074743	Thbd	AI385582|CD141|TM	thrombomodulin	protein-coding	0.000000	0.328358	
mm_113178.1	chr13	24845013	24845213	+	1	NA	NA	NA	-18	NM_001081051	210108	Mm.261514	NM_001081051	ENSMUSG00000006711	D130043K22Rik	4930451E12Rik|Kiaa0319	RIKEN cDNA D130043K22 gene	protein-coding	0.095000	0.701493	
mm_47631.1	chr5	125298606	125298806	-	1	NA	NA	NA	42388	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.020000	0.527363	
mm_53462.1	chr6	134897897	134898097	+	1	NA	NA	NA	36	NR_029441	72813	Mm.409034	NR_029441	ENSMUSG00000100876	2810454H06Rik	-	RIKEN cDNA 2810454H06 gene	ncRNA	0.070000	0.582090	
mm_153786.1	chr19	45815942	45816142	-	1	NA	NA	NA	21	NM_145704	80906	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	0.060000	0.696517	
mm_130714.1	chr15	101047283	101047483	-	1	NA	NA	NA	7016	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.070000	0.646766	
mm_154086.1	chr19	56746650	56746850	-	1	NA	NA	NA	24378	NM_007419	11554	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.040000	0.572139	
mm_33641.1	chr4	132977661	132977861	+	1	NA	NA	NA	3666	NM_010208	14191	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.015000	0.547264	
mm_112419.1	chr13	4048942	4049142	+	1	NA	NA	NA	-10549	NM_134072	105387	Mm.26838	NM_134072	ENSMUSG00000033715	Akr1c14	9030611N15Rik|AW557061	aldo-keto reductase family 1, member C14	protein-coding	0.005000	0.398010	
mm_11709.1	chr2	36230389	36230589	+	1	NA	NA	NA	63	NM_008969	19224	Mm.275434	NM_008969	ENSMUSG00000047250	Ptgs1	COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1	prostaglandin-endoperoxide synthase 1	protein-coding	0.030000	0.626866	
mm_171522.1	chr4	146610834	146611034	+	1	NA	NA	NA	-64061	NR_045468	67524	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	0.035000	0.487562	
mm_119213.1	chr14	33193905	33194105	+	1	NA	NA	NA	-8939	NM_001146022	545030	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.000000	0.497512	
mm_93672.1	chr10	117710166	117710366	-	1	NA	NA	NA	492	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.115000	0.766169	
mm_80351.1	chr9	75184180	75184380	+	1	NA	NA	NA	-47734	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.005000	0.457711	
mm_7083.1	chr1	88462518	88462718	-	1	NA	NA	NA	47448	NM_008132	14659	Mm.5187	NM_008132	ENSMUSG00000062310	Glrp1	GRP-1	glutamine repeat protein 1	protein-coding	0.015000	0.542289	
mm_154392.1	chrM	12939	13139	+	1	NA	NA	NA	NA	NA									0.045000	0.422886	49(CCTCATAAACCC,+,0.00)
mm_165586.1	chr3	32425995	32426195	+	1	NA	NA	NA	-10056	NM_008839	18706	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	protein-coding	0.000000	0.442786	
mm_159706.1	chr5	30154913	30155113	-	1	NA	NA	NA	-33	NM_178878	97212	Mm.200497	NM_178878	ENSMUSG00000025745	Hadha	C77020|Mtpa	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	protein-coding	0.060000	0.577114	
mm_167009.1	chr7	55842270	55842470	+	1	NA	NA	NA	299	NM_001164661	20430	Mm.37249	NM_011370	ENSMUSG00000030447	Cyfip1	E030028J09Rik|P140SRA-1|P140sra1|Shyc|Sra-1|Sra1|l(7)1Rl|l71Rl|l7Rl1|mKIAA0068|pl-1	cytoplasmic FMR1 interacting protein 1	protein-coding	0.105000	0.736318	
mm_72079.1	chr8	71570491	71570691	+	1	NA	NA	NA	1664	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.060000	0.572139	
mm_101901.1	chr11	49187017	49187217	-	1	NA	NA	NA	-28	NM_172793	237754	Mm.130787	NM_172793	ENSMUSG00000040283	Btnl9	B430208I01|Btn3|D330012D11Rik	butyrophilin-like 9	protein-coding	0.005000	0.472637	62(CCCCTTTAGAGG,-,0.00),63(CCCTTTAGAGGG,+,0.00)
mm_68774.1	chr7	122046806	122047006	-	1	NA	NA	NA	20180	NM_026140	67417	Mm.45171	NM_026140	ENSMUSG00000030871	Ears2	3230401I01Rik|mKIAA1970	glutamyl-tRNA synthetase 2, mitochondrial	protein-coding	0.010000	0.467662	
mm_51022.1	chr6	65042810	65043010	+	1	NA	NA	NA	243	NM_007958	13990	Mm.99113	NM_007958	ENSMUSG00000029920	Smarcad1	AV081750|AW226546|D6Pas1|Etl1|mKIAA1122	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1	protein-coding	0.180000	0.786070	
mm_170906.1	chr2	30845548	30845748	+	1	NA	NA	NA	281	NM_009116	20204	Mm.1802	NM_009116	ENSMUSG00000039476	Prrx2	Prx2|S8	paired related homeobox 2	protein-coding	0.140000	0.786070	
mm_161096.1	chr12	98532021	98532221	-	1	NA	NA	NA	8277	NR_136759	105245437	Mm.446375	NR_136759		Gm40893	-	predicted gene, 40893	ncRNA	0.040000	0.517413	
mm_26223.1	chr3	138902907	138903107	+	1	NA	NA	NA	160799	NM_019571	56224	Mm.31927	NM_019571	ENSMUSG00000028152	Tspan5	2810455A09Rik|4930505M03Rik|NET-4|Tm4sf9	tetraspanin 5	protein-coding	0.025000	0.532338	
mm_59136.1	chr7	24082092	24082292	+	1	NA	NA	NA	295	NM_001289637	210135	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	0.085000	0.631841	
mm_85011.1	chr9	87704774	87704974	-	1	NA	NA	NA	26386	NM_023814	76365	Mm.158789	NM_023814	ENSMUSG00000032419	Tbx18	2810012F10Rik|2810404D13Rik	T-box18	protein-coding	0.010000	0.388060	-88(GACTCTAAAAGT,-,0.00)
mm_124345.1	chr14	103844356	103844556	-	1	NA	NA	NA	20	NM_001136061	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.045000	0.517413	
mm_122327.1	chr14	37098146	37098346	-	1	NA	NA	NA	65	NM_130878	170677	Mm.156506	NM_130878	ENSMUSG00000021803	Cdhr1	Pcdh21|Prcad|mKIAA1775	cadherin-related family member 1	protein-coding	0.095000	0.686567	
mm_87843.1	chr10	60425979	60426179	+	1	NA	NA	NA	26353	NM_001164374	100302688	Mm.444135	NM_001164374	ENSMUSG00000090439	Gm17455	-	predicted gene, 17455	protein-coding	0.000000	0.457711	
mm_126185.1	chr15	78615730	78615930	+	1	NA	NA	NA	18783	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.020000	0.517413	
mm_151782.1	chr19	5366175	5366375	-	1	NA	NA	NA	88	NM_001038231	23825	Mm.358649	NM_011793	ENSMUSG00000024844	Banf1	Baf|Bcrp1|L2bp1/Baf	barrier to autointegration factor 1	protein-coding	0.080000	0.661692	
mm_50475.1	chr6	48987907	48988107	+	1	NA	NA	NA	1146	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.010000	0.547264	
mm_70620.1	chr8	13584045	13584245	+	1	NA	NA	NA	-21684	NM_001080781	66501	Mm.46136	NM_025601	ENSMUSG00000031452	1700029H14Rik	-	RIKEN cDNA 1700029H14 gene	protein-coding	0.000000	0.492537	
mm_65766.1	chr7	28741663	28741863	-	1	NA	NA	NA	18	NM_011885	24030	Mm.358650	NM_011885	ENSMUSG00000045948	Mrps12	AI327385|Rpms12|rps12	mitochondrial ribosomal protein S12	protein-coding	0.035000	0.587065	
mm_161247.1	chr13	100317602	100317802	-	1	NA	NA	NA	-14	NM_021545	53880	Mm.218759	NM_021545		Naip7	Birc1g|Naip-rs4B|Naip6	NLR family, apoptosis inhibitory protein 7	protein-coding	0.015000	0.517413	-79(TCCTTTAAGAGG,-,0.00),-78(CCTTTAAGAGGC,+,0.00)
mm_122898.1	chr14	54952185	54952385	-	1	NA	NA	NA	-3143	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.025000	0.547264	
mm_96630.1	chr11	69156997	69157197	+	1	NA	NA	NA	25	NM_009659	11686	Mm.340329	NM_009659	ENSMUSG00000032807	Alox12b	12R-LOX|Aloxe2|e-LOX2	arachidonate 12-lipoxygenase, 12R type	protein-coding	0.055000	0.631841	
mm_28928.1	chr3	98859639	98859839	-	1	NA	NA	NA	55	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.010000	0.417910	
mm_28487.1	chr3	92458623	92458823	-	1	NA	NA	NA	-3	NM_011478	20766	Mm.57092	NM_011478	ENSMUSG00000045539	Sprr3	SPR3	small proline-rich protein 3	protein-coding	0.005000	0.407960	
mm_136381.1	chr16	92825894	92826094	-	1	NA	NA	NA	80	NM_001111021	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.025000	0.492537	
mm_132297.1	chr16	33497816	33498016	+	1	NA	NA	NA	-20413	NM_134251	171286	Mm.35253	NM_134251	ENSMUSG00000035506	Slc12a8	CCC9|E330020C02Rik	solute carrier family 12 (potassium/chloride transporters), member 8	protein-coding	0.005000	0.298507	-79(CCTTTAAAAATG,+,0.00),30(CTATTTAAAAGC,-,0.00)
mm_96095.1	chr11	60417217	60417417	+	1	NA	NA	NA	172	NM_025757	66771	Mm.29950	NM_025757	ENSMUSG00000018415	Gid4	4933439F18Rik	GID complex subunit 4, VID24 homolog	protein-coding	0.095000	0.597015	
mm_139517.1	chr17	56584902	56585102	+	1	NA	NA	NA	20	NM_001163300	224903	Mm.255066	NM_001163300	ENSMUSG00000071054	Safb	3110021E02Rik|5330423C17Rik|AU018122|D18386|E130307D12|HAP|HET|SAF-B1|SAFB1	scaffold attachment factor B	protein-coding	0.105000	0.567164	
mm_149223.1	chr19	10018171	10018371	+	1	NA	NA	NA	43	NM_144538	74760	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	0.105000	0.736318	
mm_57034.1	chr6	122333238	122333438	-	1	NA	NA	NA	6319	NM_001042623	13619	Mm.6822	NM_007905	ENSMUSG00000040669	Phc1	AW557034|Edr|Edr1|Mph1|Rae-28|rae28	polyhomeotic-like 1 (Drosophila)	protein-coding	0.040000	0.577114	
mm_147483.1	chr18	47248163	47248363	-	1	NA	NA	NA	120605	NM_018744	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.035000	0.572139	
mm_167269.1	chr8	31975006	31975206	+	1	NA	NA	NA	-56903	NM_178591	211323	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding	0.000000	0.333333	
mm_139186.1	chr17	47595966	47596166	+	1	NA	NA	NA	2599	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.015000	0.601990	
mm_168263.1	chr10	90248855	90249055	+	1	NA	NA	NA	-326772	NM_001177397	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.025000	0.467662	-81(TCATTTAAAAGG,-,0.00),-62(CACCATATAGGG,-,0.00)
mm_39612.1	chr5	24164952	24165152	+	1	NA	NA	NA	89	NM_001346582	231042	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	0.110000	0.686567	
mm_138103.1	chr17	34092782	34092982	+	1	NA	NA	NA	503	NM_008206	15001	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	0.015000	0.482587	
mm_80897.1	chr9	99828560	99828760	+	1	NA	NA	NA	47510	NM_011440	20669	Mm.261595	NM_011440	ENSMUSG00000053747	Sox14	-	SRY (sex determining region Y)-box 14	protein-coding	0.010000	0.472637	
mm_154017.1	chr19	53283810	53284010	-	1	NA	NA	NA	-26596	NM_001008542	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.010000	0.497512	
mm_18634.1	chr2	69380212	69380412	-	1	NA	NA	NA	-150	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.015000	0.393035	
mm_158265.1	chrX	109013396	109013596	-	1	NA	NA	NA	-116	NM_016710	50887	Mm.298443	NM_016710	ENSMUSG00000031245	Hmgn5	GARP45|NBP-45|Nsbp1	high-mobility group nucleosome binding domain 5	protein-coding	0.065000	0.562189	
mm_157965.1	chrX	90744716	90744916	-	1	NA	NA	NA	-147326	NM_001101450	212952	Mm.477436	NM_001101450	ENSMUSG00000091497	Gm44	-	predicted gene 44	protein-coding	0.005000	0.447761	
mm_87443.1	chr10	51481566	51481766	+	1	NA	NA	NA	1054	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.005000	0.482587	
mm_67026.1	chr7	66377941	66378141	-	1	NA	NA	NA	3683	NR_106024	102465640		NR_106024	ENSMUSG00000098353	Mir7057	Gm27550|mmu-mir-7057	microRNA 7057	ncRNA	0.005000	0.258706	
mm_165043.1	chr19	39038004	39038204	+	1	NA	NA	NA	-22902	NM_028191	72303	Mm.482578	NM_028191	ENSMUSG00000067231	Cyp2c65	2210009K14Rik	cytochrome P450, family 2, subfamily c, polypeptide 65	protein-coding	0.000000	0.398010	
mm_147855.1	chr18	63692304	63692504	-	1	NA	NA	NA	-45	NM_016792	53382	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.120000	0.726368	
mm_83019.1	chr9	36797264	36797464	-	1	NA	NA	NA	29	NM_001199494	13663	Mm.4337	NM_007915	ENSMUSG00000062762	Ei24	AA536736|AI115355|PIG8	etoposide induced 2.4 mRNA	protein-coding	0.120000	0.781095	
mm_122956.1	chr14	54967989	54968189	-	1	NA	NA	NA	-698	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.005000	0.527363	
mm_38485.1	chr4	140750510	140750710	-	1	NA	NA	NA	-7967	NM_153106	242726	Mm.271661	NM_153106	ENSMUSG00000040935	Padi6	Pad6|Padi5|ePAD	peptidyl arginine deiminase, type VI	protein-coding	0.045000	0.626866	
mm_43672.1	chr5	138775307	138775507	+	1	NA	NA	NA	20326	NM_030565	80752	Mm.320355	NM_030565	ENSMUSG00000025854	Fam20c	C76981|DMP-4|DMP4|GEF-CK|mKIAA4081	family with sequence similarity 20, member C	protein-coding	0.010000	0.527363	
mm_134122.1	chr16	10313829	10314029	-	1	NA	NA	NA	39	NM_007929	13731	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	0.110000	0.776119	
mm_151957.1	chr19	5801280	5801480	-	1	NA	NA	NA	1292	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.015000	0.462687	-31(GCTTTTAAAATC,+,0.00),-30(CTTTTAAAATCC,+,0.00)
mm_10482.1	chr2	14739170	14739370	+	1	NA	NA	NA	18628	NR_028497	625342	Mm.484784	NR_028497		Gm13315	OTTMUSG00000011384	lactate dehydrogenase A pseudogene	pseudo	0.035000	0.532338	
mm_95800.1	chr11	55109278	55109478	+	1	NA	NA	NA	11393	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.025000	0.572139	
mm_61700.1	chr7	81213171	81213371	+	1	NA	NA	NA	-533	NM_008803	18584	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.150000	0.731343	
mm_165657.1	chr3	87487294	87487494	+	1	NA	NA	NA	-38184	NM_001083318	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.000000	0.398010	
mm_162133.1	chrX	73214238	73214438	+	1	NA	NA	NA	5	NM_001293679	27083	Mm.104764	NM_021365	ENSMUSG00000067768	Xlr4b	Xlr4	X-linked lymphocyte-regulated 4B	protein-coding	0.040000	0.572139	
mm_73495.1	chr8	107150556	107150756	+	1	NA	NA	NA	-5	NM_025558	66427	Mm.20242	NM_025558	ENSMUSG00000031924	Cyb5b	1810044O22Rik|AU015618|Cyb5m	cytochrome b5 type B	protein-coding	0.105000	0.676617	
mm_64775.1	chr7	4996090	4996290	-	1	NA	NA	NA	-89	NM_026741	68490	Mm.76400	NM_026741	ENSMUSG00000051550	Zfp579	1110003A17Rik|Znf579	zinc finger protein 579	protein-coding	0.050000	0.706468	
mm_134081.1	chr16	8721615	8721815	-	1	NA	NA	NA	16627	NM_001003918	252870	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.020000	0.457711	
mm_90750.1	chr10	5488149	5488349	-	1	NA	NA	NA	65	NM_001347711	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.020000	0.472637	
mm_73972.1	chr8	120505918	120506118	+	1	NA	NA	NA	17152	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.040000	0.492537	
mm_147638.1	chr18	60269494	60269694	-	1	NA	NA	NA	3673	NM_001034859	225594	Mm.329460	NM_001034859	ENSMUSG00000068606	Gm4841	EG225594|Ifgga3	predicted gene 4841	protein-coding	0.005000	0.398010	
mm_47387.1	chr5	122994348	122994548	-	1	NA	NA	NA	5094	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.005000	0.437811	
mm_95919.1	chr11	58220962	58221162	+	1	NA	NA	NA	6085	NM_019440	54396	Mm.458517	NM_019440	ENSMUSG00000069874	Irgm2	AI481100|GTPI|Ifggd2|Iigp2	immunity-related GTPase family M member 2	protein-coding	0.015000	0.462687	
mm_18548.1	chr2	65022678	65022878	-	1	NA	NA	NA	-12	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0.115000	0.761194	
mm_108323.1	chr12	79766803	79767003	+	1	NA	NA	NA	157830	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.000000	0.437811	
mm_118181.1	chr13	107022003	107022203	-	1	NA	NA	NA	11	NM_001145779	16563	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	0.145000	0.736318	
mm_154891.1	chrX	20845276	20845476	+	1	NA	NA	NA	-3167	NM_009703	11836	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	0.005000	0.442786	
mm_52368.1	chr6	113046237	113046437	+	1	NA	NA	NA	10	NM_008188	14911	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0.115000	0.726368	
mm_141066.1	chr17	25795552	25795752	-	1	NA	NA	NA	1393	NM_133719	70083	Mm.41925	NM_133719	ENSMUSG00000002274	Metrn	1810034B16Rik|Hyrac	meteorin, glial cell differentiation regulator	protein-coding	0.010000	0.527363	
mm_59138.1	chr7	24134066	24134266	+	1	NA	NA	NA	3	NM_019941	56525	Mm.295595	NM_019941	ENSMUSG00000047603	Zfp235	0610030O19Rik|AI428448	zinc finger protein 235	protein-coding	0.055000	0.577114	
mm_141057.1	chr17	25753959	25754159	-	1	NA	NA	NA	268	NM_018857	56047	Mm.17510	NM_018857	ENSMUSG00000063011	Msln	MPF	mesothelin	protein-coding	0.010000	0.532338	
mm_11678.1	chr2	35461409	35461609	+	1	NA	NA	NA	-60	NM_001145821	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.030000	0.557214	
mm_118926.1	chr14	27038891	27039091	+	1	NA	NA	NA	-10	NM_134437	171463	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	0.090000	0.686567	
mm_121191.1	chr14	103050209	103050409	+	1	NA	NA	NA	3297	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.010000	0.427861	
mm_14636.1	chr2	136781725	136781925	+	1	NA	NA	NA	68375	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.005000	0.378109	
mm_16983.1	chr2	18047731	18047931	-	1	NA	NA	NA	618	NM_028317	72668	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113	SKI/DACH domain containing 1	protein-coding	0.110000	0.646766	
mm_88827.1	chr10	80804037	80804237	+	1	NA	NA	NA	-1111	NM_007445	11705	Mm.376094	NM_007445	ENSMUSG00000035262	Amh	MIS	anti-Mullerian hormone	protein-coding	0.025000	0.716418	
mm_85444.1	chr9	104262157	104262357	-	1	NA	NA	NA	673	NM_001163026	235567	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.045000	0.482587	
mm_97916.1	chr11	83525892	83526092	+	1	NA	NA	NA	-3893	NM_001045543	629303	Mm.390417	NM_001045543	ENSMUSG00000018925	Heatr9	Gm11435|OTTMUSG00000000990	HEAT repeat containing 9	protein-coding	0.010000	0.497512	
mm_56874.1	chr6	118861363	118861563	-	1	NA	NA	NA	-18695	NR_046053	74363	Mm.399403	NR_046053		4931430N09Rik	-	RIKEN cDNA 4931430N09 gene	ncRNA	0.000000	0.437811	
mm_409.1	chr1	34215191	34215391	+	1	NA	NA	NA	54961	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.025000	0.542289	
mm_65342.1	chr7	24987426	24987626	-	1	NA	NA	NA	141	NR_106014	102465634		NR_106014	ENSMUSG00000099258	Mir7047	Gm27270|mmu-mir-7047	microRNA 7047	ncRNA	0.015000	0.552239	
mm_169740.1	chr15	85034140	85034340	+	1	NA	NA	NA	-2822	NM_133750	73225	Mm.247535	NM_133750	ENSMUSG00000022434	Fam118a	-	family with sequence similarity 118, member A	protein-coding	0.025000	0.547264	
mm_168560.1	chr1	168884937	168885137	-	1	NA	NA	NA	394394	NR_105766	102465178		NR_105766	ENSMUSG00000098407	Mir6348	Gm27412|mmu-mir-6348	microRNA 6348	ncRNA	0.030000	0.532338	
mm_31392.1	chr4	48043760	48043960	+	1	NA	NA	NA	-1445	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.025000	0.432836	
mm_53507.1	chr6	135368878	135369078	+	1	NA	NA	NA	1485	NM_001288627	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.010000	0.432836	
mm_152767.1	chr19	20536655	20536855	-	1	NA	NA	NA	15575	NR_045778	320155	Mm.447252	NR_045778		C730002L08Rik	-	RIKEN cDNA C730002L08 gene	ncRNA	0.015000	0.442786	
mm_52534.1	chr6	115853508	115853708	+	1	NA	NA	NA	80	NM_031177	81896	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	0.070000	0.577114	
mm_42511.1	chr5	115542850	115543050	+	1	NA	NA	NA	-16517	NM_007475	11837	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.020000	0.562189	
mm_31375.1	chr4	47409724	47409924	+	1	NA	NA	NA	23608	NM_001312869	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.000000	0.407960	
mm_134428.1	chr16	17925606	17925806	-	1	NA	NA	NA	2513	NM_153150	13358	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0.005000	0.537313	
mm_35222.1	chr4	19659555	19659755	-	1	NA	NA	NA	49349	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.015000	0.467662	
mm_59404.1	chr7	26835240	26835440	+	1	NA	NA	NA	1	NM_007812	13087	Mm.389848	NM_007812	ENSMUSG00000005547	Cyp2a5	CYPIIA5|Coh|Cyp15a2	cytochrome P450, family 2, subfamily a, polypeptide 5	protein-coding	0.015000	0.502488	-33(ATGTATAAAAGC,-,0.00)
mm_116979.1	chr13	56288840	56289040	-	1	NA	NA	NA	7611	NM_019568	57266	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding	0.025000	0.537313	
mm_2692.1	chr1	127729333	127729533	+	1	NA	NA	NA	20	NM_001033041	266645	Mm.25735	NM_001033041	ENSMUSG00000026348	Acmsd	-	amino carboxymuconate semialdehyde decarboxylase	protein-coding	0.020000	0.467662	
mm_171188.1	chr3	43250285	43250485	+	1	NA	NA	NA	1507767	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.015000	0.412935	
mm_79347.1	chr9	53667008	53667208	+	1	NA	NA	NA	399	NM_001161618	75717	Mm.218910	NM_027807	ENSMUSG00000032030	Cul5	4921514I20Rik|8430423K24Rik|AI852817|C030032G03Rik|C330021I08Rik|VACM-1|VACM1	cullin 5	protein-coding	0.125000	0.701493	
mm_63018.1	chr7	121032697	121032897	+	1	NA	NA	NA	-1648	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.005000	0.437811	45(CTCTATAAAAAG,-,0.00)
mm_124680.1	chr15	6429597	6429797	+	1	NA	NA	NA	-15636	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.035000	0.522388	
mm_96415.1	chr11	67255534	67255734	+	1	NA	NA	NA	17822	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.030000	0.502488	
mm_42350.1	chr5	114911341	114911541	+	1	NA	NA	NA	-11799	NM_145209	231655	Mm.95479	NM_145209	ENSMUSG00000041827	Oasl1	7530414C13Rik|oasl9	2'-5' oligoadenylate synthetase-like 1	protein-coding	0.020000	0.457711	
mm_116685.1	chr13	49287835	49288035	-	1	NA	NA	NA	21273	NM_015759	30938	Mm.291089	NM_015759	ENSMUSG00000037946	Fgd3	5830461L01Rik|ZFYVE5	FYVE, RhoGEF and PH domain containing 3	protein-coding	0.000000	0.472637	-61(CCTTTTAAGTGC,+,0.00)
mm_26004.1	chr3	135281187	135281387	+	1	NA	NA	NA	66	NM_027208	69772	Mm.45121	NM_027208	ENSMUSG00000028167	Bdh2	1810026B04Rik|Dhrs6	3-hydroxybutyrate dehydrogenase, type 2	protein-coding	0.020000	0.457711	-80(CTTCTTAAAAGC,-,0.00)
mm_94708.1	chr11	20316593	20316793	+	1	NA	NA	NA	16020	NM_018861	55963	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.005000	0.492537	58(GTCTTTAAAAAA,-,0.00)
mm_12417.1	chr2	70561895	70562095	+	1	NA	NA	NA	-134	NM_001312900	14415	Mm.272120	NM_008077	ENSMUSG00000070880	Gad1	EP10|Gad-1	glutamate decarboxylase 1	protein-coding	0.065000	0.567164	
mm_133116.1	chr16	65649316	65649516	+	1	NA	NA	NA	-86719	NM_026879	68942	Mm.432944	NM_026879	ENSMUSG00000004843	Chmp2b	1190006E07Rik	charged multivesicular body protein 2B	protein-coding	0.000000	0.482587	
mm_1991.1	chr1	87125872	87126072	+	1	NA	NA	NA	964	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.030000	0.512438	
mm_146817.1	chr18	20945671	20945871	-	1	NA	NA	NA	1146	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.010000	0.477612	76(GTTTATATAGCA,+,0.00)
mm_68172.1	chr7	103826475	103826675	-	1	NA	NA	NA	1353	NM_001201391	100503605	Mm.288567	NM_001201391	ENSMUSG00000052305	Hbb-bs	Beta-s|Hbbt1|Hbbt2	hemoglobin, beta adult s chain	protein-coding	0.000000	0.348259	
mm_160303.1	chr7	139213066	139213266	-	1	NA	NA	NA	-109	NM_001143755	76612	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	0.080000	0.616915	
mm_130234.1	chr15	96460864	96461064	-	1	NA	NA	NA	-121	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.185000	0.815920	
mm_96767.1	chr11	69921709	69921909	+	1	NA	NA	NA	149	NM_001166593	276770	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.065000	0.542289	
mm_40816.1	chr5	72203283	72203483	+	1	NA	NA	NA	40	NM_153389	231287	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.075000	0.631841	
mm_15665.1	chr2	163323283	163323483	+	1	NA	NA	NA	74590	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	0.000000	0.398010	
mm_106372.1	chr11	118401795	118401995	-	1	NA	NA	NA	36	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.015000	0.527363	
mm_64776.1	chr7	5013154	5013354	-	1	NA	NA	NA	-12	NM_001110330	23877	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	0.025000	0.512438	
mm_33883.1	chr4	136172851	136173051	+	1	NA	NA	NA	677	NM_177733	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.080000	0.681592	
mm_126923.1	chr15	91672955	91673155	+	1	NA	NA	NA	-169	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.065000	0.601990	-76(CTCCCTATAGGG,-,0.00),-74(CCCTATAGGGGG,+,0.00)
mm_98346.1	chr11	93100095	93100295	+	1	NA	NA	NA	905	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	0.055000	0.552239	
mm_129628.1	chr15	80219282	80219482	-	1	NA	NA	NA	-14698	NM_178719	239555	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.055000	0.597015	
mm_108436.1	chr12	82339600	82339800	+	1	NA	NA	NA	28351	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.015000	0.517413	
mm_38584.1	chr4	141820008	141820208	-	1	NA	NA	NA	5897	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.010000	0.383085	
mm_64778.1	chr7	5014565	5014765	-	1	NA	NA	NA	32	NM_001110328	23877	Mm.38911	NM_011813	ENSMUSG00000061374	Fiz1	AI790204|mFLJ00416	Flt3 interacting zinc finger protein 1	protein-coding	0.055000	0.621891	
mm_98968.1	chr11	98682519	98682719	+	1	NA	NA	NA	65	NM_009439	22123	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0.090000	0.681592	
mm_76117.1	chr8	80835229	80835429	-	1	NA	NA	NA	45150	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.025000	0.462687	
mm_41229.1	chr5	88720802	88721002	+	1	NA	NA	NA	31	NM_026735	68473	Mm.35764	NM_026735	ENSMUSG00000006262	Mob1b	1110003E08Rik|AU015450|B230364F10|Mobkl1a	MOB kinase activator 1B	protein-coding	0.140000	0.721393	
mm_80800.1	chr9	96258911	96259111	+	1	NA	NA	NA	-237	NM_001184711	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.000000	0.303483	
mm_129474.1	chr15	78710700	78710900	-	1	NA	NA	NA	7313	NM_183141	207393	Mm.323188	NM_183141	ENSMUSG00000043460	Elfn2	6330514E13|AW048948|BC094219|Lrrc62|Ppp1r29	leucine rich repeat and fibronectin type III, extracellular 2	protein-coding	0.015000	0.601990	
mm_116998.1	chr13	56703849	56704049	-	1	NA	NA	NA	281	NM_001164042	17129	Mm.272920	NM_008541	ENSMUSG00000021540	Smad5	1110051M15Rik|AI451355|Dwf-C|Madh5|MusMLP	SMAD family member 5	protein-coding	0.040000	0.562189	
mm_44271.1	chr5	5694191	5694391	-	1	NA	NA	NA	35	NM_001285469	74051	Mm.274956	NM_028734	ENSMUSG00000015653	Steap2	4921538B17Rik|AI930049|AW045895|IPCA-1|IPCA1|PCANAP1|STAMP1|STMP	six transmembrane epithelial antigen of prostate 2	protein-coding	0.100000	0.656716	
mm_164071.1	chr14	120278859	120279059	-	1	NA	NA	NA	3290	NM_175341	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding	0.015000	0.567164	
mm_4535.1	chr1	175880692	175880892	+	1	NA	NA	NA	14	NM_012012	26909	Mm.283046	NM_012012	ENSMUSG00000039748	Exo1	5730442G03Rik|Msa	exonuclease 1	protein-coding	0.115000	0.681592	
mm_48842.1	chr5	149367000	149367200	-	1	NA	NA	NA	-44706	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.005000	0.502488	
mm_120195.1	chr14	61599477	61599677	+	1	NA	NA	NA	65	NM_023233	66597	Mm.491258	NM_023233	ENSMUSG00000035235	Trim13	3110001L12Rik|CAR|LEU5|RNF77|Rfp2	tripartite motif-containing 13	protein-coding	0.120000	0.761194	
mm_137012.1	chr17	17830986	17831186	+	1	NA	NA	NA	111	NM_001162909	75202	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0.020000	0.547264	
mm_90339.1	chr10	127086801	127087001	+	1	NA	NA	NA	7994	NM_001033263	216439	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.025000	0.507463	
mm_142480.1	chr17	45686768	45686968	-	1	NA	NA	NA	496	NM_026732	68463	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	0.010000	0.507463	
mm_45810.1	chr5	87670941	87671141	-	1	NA	NA	NA	4833	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.015000	0.323383	
mm_150344.1	chr19	34612933	34613133	+	1	NA	NA	NA	5076	NM_001005858	667370	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	0.000000	0.378109	
mm_108955.1	chr12	102368201	102368401	+	1	NA	NA	NA	71512	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.020000	0.542289	
mm_162469.1	chr1	132007796	132007996	-	1	NA	NA	NA	291	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.135000	0.736318	
mm_33514.1	chr4	130928547	130928747	+	1	NA	NA	NA	15313	NM_010686	16792	Mm.271868	NM_010686	ENSMUSG00000028581	Laptm5	E3	lysosomal-associated protein transmembrane 5	protein-coding	0.020000	0.557214	
mm_39912.1	chr5	31452340	31452540	+	1	NA	NA	NA	4	NM_172993	269639	Mm.259127	NM_172993	ENSMUSG00000062761	Zfp512	2500002M11Rik|AI450173|D230008H22|Znf512	zinc finger protein 512	protein-coding	0.075000	0.611940	
mm_8586.1	chr1	156000313	156000513	-	1	NA	NA	NA	-27158	NM_001039184	74081	Mm.260247	NM_001039184	ENSMUSG00000033671	Cep350	4933409L06Rik|6430546F08Rik	centrosomal protein 350	protein-coding	0.000000	0.293532	
mm_87609.1	chr10	57784884	57785084	+	1	NA	NA	NA	61	NM_021272	12140	Mm.3644	NM_021272	ENSMUSG00000019874	Fabp7	B-FABP|BFABP|Blbp|MRG	fatty acid binding protein 7, brain	protein-coding	0.020000	0.467662	
mm_7106.1	chr1	89563427	89563627	-	1	NA	NA	NA	108716	NM_001037136	347722	Mm.291135	NM_178119	ENSMUSG00000055013	Agap1	Centg2|Ggap1|R75364|mKIAA1099	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	protein-coding	0.005000	0.487562	-14(GCCTATAAAAGT,-,0.00)
mm_135693.1	chr16	52436406	52436606	-	1	NA	NA	NA	16575	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.288557	-59(CTCTATTAAGAG,-,0.00)
mm_47451.1	chr5	123525350	123525550	-	1	NA	NA	NA	-1286	NM_023232	66593	Mm.46716	NM_023232	ENSMUSG00000029433	Diablo	0610041G12Rik|1700006L01Rik|AU040403|Smac	diablo, IAP-binding mitochondrial protein	protein-coding	0.025000	0.562189	
mm_158930.1	chr1	64690917	64691117	+	1	NA	NA	NA	-328	NM_001097644	227210	Mm.39706	NM_001097644	ENSMUSG00000070871	Ccnyl1	9630037P07Rik|AW554339	cyclin Y-like 1	protein-coding	0.180000	0.855721	
mm_167886.1	chrX	57053191	57053391	+	1	NA	NA	NA	-279	NM_028242	72459	Mm.2152	NM_028242	ENSMUSG00000067873	Htatsf1	1600023H17Rik|2600017A12Rik|2700077B20Rik|TAT-SF1	HIV TAT specific factor 1	protein-coding	0.085000	0.592040	
mm_45054.1	chr5	41807111	41807311	-	1	NA	NA	NA	37104	NM_001310601	665775	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0.030000	0.388060	-21(TGGTAGAAAAGG,-,0.00)
mm_113598.1	chr13	41016192	41016392	+	1	NA	NA	NA	42	NM_025387	66154	Mm.30005	NM_025387	ENSMUSG00000021361	Tmem14c	1110021D01Rik|AU020193|HSPC194	transmembrane protein 14C	protein-coding	0.090000	0.671642	
mm_148647.1	chr19	5493050	5493250	+	1	NA	NA	NA	2695	NM_007687	12631	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.005000	0.457711	
mm_38478.1	chr4	140699711	140699911	-	1	NA	NA	NA	-1662	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.060000	0.527363	-43(TGCCTTTAAAAG,-,0.00),-42(GCCTTTAAAAGG,-,0.00),-41(CCTTTAAAAGGT,+,0.00)
mm_168070.1	chr10	105238378	105238578	+	1	NA	NA	NA	336001	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.075000	0.552239	-92(AACTTTAAATGG,-,0.00),56(CCCCAGAAAAGG,-,0.00)
mm_10261.1	chr2	9378151	9378351	+	1	NA	NA	NA	188736	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.020000	0.462687	
mm_160981.1	chr11	102761446	102761646	+	1	NA	NA	NA	111	NM_001110778	11488	Mm.89854	NM_009613	ENSMUSG00000020926	Adam11	AW060611|Mdc	a disintegrin and metallopeptidase domain 11	protein-coding	0.165000	0.796020	
mm_66582.1	chr7	45366704	45366904	-	1	NA	NA	NA	215	NM_029741	76787	Mm.277235	NM_029741	ENSMUSG00000003863	Ppfia3	2410127E16Rik	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3	protein-coding	0.080000	0.706468	
mm_119404.1	chr14	44926721	44926921	+	1	NA	NA	NA	20690	NR_030556	100124437		NR_030556	ENSMUSG00000105372	Mir327	Mirn327|mmu-mir-327	microRNA 327	ncRNA	0.005000	0.477612	-94(CCCTTTAAATGA,-,0.00)
mm_120201.1	chr14	61648361	61648561	+	1	NA	NA	NA	-16351	NR_029733	387174		NR_029733	ENSMUSG00000093007	Mir15a	Mirn15a|mir-15a|mmu-mir-15a	microRNA 15a	ncRNA	0.125000	0.736318	
mm_37745.1	chr4	129600548	129600748	-	1	NA	NA	NA	0	NM_018799	54709	Mm.250874	NM_018799	ENSMUSG00000028798	Eif3i	36kDa|D4Ertd632e|Eif3s2|Trip1	eukaryotic translation initiation factor 3, subunit I	protein-coding	0.095000	0.681592	
mm_46489.1	chr5	105132156	105132356	-	1	NA	NA	NA	7296	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.323383	
mm_8061.1	chr1	135375173	135375373	-	1	NA	NA	NA	-210	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.015000	0.592040	
mm_150415.1	chr19	37207574	37207774	+	1	NA	NA	NA	129	NM_001164336	69104	Mm.175989	NM_027314	ENSMUSG00000023307	March5	1810015H18Rik|2310008I22Rik|2700055A20Rik|5730499H23Rik|E130202O05Rik|MARCH-V|MITOL|Marchv|Rnf153	membrane-associated ring finger (C3HC4) 5	protein-coding	0.160000	0.820896	
mm_64646.1	chr7	4028693	4028893	-	1	NA	NA	NA	34411	NM_001302677	52855	Mm.290880	NM_178611	ENSMUSG00000055541	Lair1	5133400O11Rik|BB115266|D7Bwg0421e|Lair-1	leukocyte-associated Ig-like receptor 1	protein-coding	0.020000	0.437811	-85(CCTTATAAAACA,+,0.00)
mm_92691.1	chr10	80665811	80666011	-	1	NA	NA	NA	-8840	NM_145361	208198	Mm.60720	NM_145361	ENSMUSG00000003344	Btbd2	2610037C03Rik|4930512K17Rik	BTB (POZ) domain containing 2	protein-coding	0.010000	0.492537	
mm_104022.1	chr11	85804108	85804308	-	1	NA	NA	NA	28180	NR_077059	69909	Mm.440214	NR_077059	ENSMUSG00000087013	2610027K06Rik	-	RIKEN cDNA 2610027K06 gene	ncRNA	0.010000	0.537313	
mm_115053.1	chr13	100651263	100651463	+	1	NA	NA	NA	20	NM_027592	102216272	Mm.301148	NM_027592	ENSMUSG00000078941	Ak6	2810046E22Rik|4921516M08Rik|AK/ATPase	adenylate kinase 6	protein-coding	0.130000	0.701493	
mm_167615.1	chr9	56160995	56161195	-	1	NA	NA	NA	-25	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.095000	0.651741	-33(TCCTTTAAGAGG,-,0.00),-32(CCTTTAAGAGGC,+,0.00)
mm_84385.1	chr9	65422855	65423055	-	1	NA	NA	NA	-182	NM_178933	330962	Mm.335247	NM_178933	ENSMUSG00000053862	Slc51b	Ostb	solute carrier family 51, beta subunit	protein-coding	0.015000	0.572139	
mm_41745.1	chr5	102823916	102824116	+	1	NA	NA	NA	-20991	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.000000	0.378109	
mm_148889.1	chr19	6877203	6877403	+	1	NA	NA	NA	-19092	NM_001081291	78317	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.015000	0.462687	-34(GCCTTTATAAAC,+,0.00),-34(GCCTTTATAAAC,-,0.00),-32(CTTTATAAACTG,+,0.00)
mm_96290.1	chr11	63131406	63131606	+	1	NA	NA	NA	49	NM_001302255	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.080000	0.666667	
mm_1915.1	chr1	86021844	86022044	+	1	NA	NA	NA	2	NM_027029	70060	Mm.196313	NM_027029	ENSMUSG00000026226	Spata3	1700011N12Rik|1700029H01Rik|4930424D10Rik|Mtsarg1|Tsarg1	spermatogenesis associated 3	protein-coding	0.010000	0.557214	
mm_167533.1	chr9	21291303	21291503	-	1	NA	NA	NA	-194	NM_009878	12581	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	protein-coding	0.065000	0.616915	
mm_116694.1	chr13	49593863	49594063	-	1	NA	NA	NA	11216	NM_012050	27047	Mm.390589	NM_012050	ENSMUSG00000048368	Omd	OSAD|SLRR2C	osteomodulin	protein-coding	0.005000	0.333333	
mm_74563.1	chr8	11007865	11008065	-	1	NA	NA	NA	115	NR_046017	619321	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0.120000	0.721393	
mm_91250.1	chr10	22731763	22731963	-	1	NA	NA	NA	-416	NM_011603	237336	Mm.86670	NM_011603	ENSMUSG00000071359	Tbpl1	4732475G08|AW011832|AW491032|D18347|STD|TLF|TRF2|TRP|Tlp	TATA box binding protein-like 1	protein-coding	0.135000	0.736318	
mm_48870.1	chr5	150583697	150583897	-	1	NA	NA	NA	10728	NM_133898	100637	Mm.279932	NM_133898	ENSMUSG00000041132	N4bp2l1	2410024N18Rik|AI428195|B230342M21Rik	NEDD4 binding protein 2-like 1	protein-coding	0.005000	0.512438	
mm_168971.1	chr1	28580682	28580882	-	1	NA	NA	NA	199470	NM_001013750	210962	Mm.214178	NM_001013750	ENSMUSG00000048411	Gm597	-	predicted gene 597	protein-coding	0.025000	0.398010	-48(GCATATATAGAA,+,0.00),-23(TACTTTTAAAAG,-,0.00),-22(ACTTTTAAAAGG,-,0.00),-21(CTTTTAAAAGGC,+,0.00)
mm_7221.1	chr1	93342467	93342667	-	1	NA	NA	NA	221	NM_080850	269224	Mm.379454	NM_080850	ENSMUSG00000026274	Pask	mKIAA0135	PAS domain containing serine/threonine kinase	protein-coding	0.075000	0.631841	
mm_58177.1	chr6	142778972	142779172	-	1	NA	NA	NA	22386	NM_009908	12764	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.005000	0.487562	
mm_104789.1	chr11	98707640	98707840	-	1	NA	NA	NA	6427	NM_009971	12985	Mm.1238	NM_009971	ENSMUSG00000038067	Csf3	Csfg|G-CSF|MGI-IG	colony stimulating factor 3 (granulocyte)	protein-coding	0.030000	0.562189	
mm_77982.1	chr9	7871902	7872102	+	1	NA	NA	NA	1168	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.020000	0.492537	
mm_91921.1	chr10	60299939	60300139	-	1	NA	NA	NA	15578	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.050000	0.616915	
mm_108067.1	chr12	73941617	73941817	+	1	NA	NA	NA	-22813	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.010000	0.353234	
mm_160654.1	chr9	115016610	115016810	+	1	NA	NA	NA	-50569	NM_148958	74486	Mm.458474	NM_148958	ENSMUSG00000040875	Osbpl10	4933433D06Rik|C820004B04Rik|OPR-10|ORP-10	oxysterol binding protein-like 10	protein-coding	0.010000	0.407960	
mm_56195.1	chr6	88841736	88841936	-	1	NA	NA	NA	99	NM_030251	80283	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.095000	0.666667	
mm_90547.1	chr10	128092695	128092895	+	1	NA	NA	NA	12	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.125000	0.820896	-62(GCCCCTTTAAGC,-,0.00),-60(CCCTTTAAGCGC,+,0.00)
mm_66332.1	chr7	42867135	42867335	-	1	NA	NA	NA	-1	NR_046214	100039706	Mm.260936	NR_046214	ENSMUSG00000092225	Gm2381	-	zinc finger protein 936 pseudogene	pseudo	0.015000	0.542289	
mm_104422.1	chr11	94831902	94832102	-	1	NA	NA	NA	17591	NM_001205037	432591	Mm.370372	NM_001205037		Gm11544	OTTMUSG00000002042	predicted gene 11544	protein-coding	0.010000	0.522388	-34(CTCTATTTAAGC,-,0.00)
mm_23746.1	chr3	69344065	69344265	+	1	NA	NA	NA	27247	NM_178726	242083	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	0.000000	0.308458	
mm_76348.1	chr8	84736512	84736712	-	1	NA	NA	NA	35155	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.015000	0.572139	
mm_84408.1	chr9	65555958	65556158	-	1	NA	NA	NA	24029	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.010000	0.542289	
mm_68267.1	chr7	105595482	105595682	-	1	NA	NA	NA	4534	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.030000	0.537313	
mm_75308.1	chr8	41134157	41134357	-	1	NA	NA	NA	-531	NM_001005863	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.040000	0.587065	-54(CCTTATAAACCC,+,0.00)
mm_168615.1	chr11	77293439	77293639	+	1	NA	NA	NA	-54741	NM_001291190	237860	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot homolog 2 (Drosophila)	protein-coding	0.040000	0.507463	
mm_105507.1	chr11	106193503	106193703	-	1	NA	NA	NA	0	NM_001252448	72149	Mm.403722	NM_028126	ENSMUSG00000069631	Strada	2610019A05Rik|6030402H20Rik|AI480680|E130112C09Rik	STE20-related kinase adaptor alpha	protein-coding	0.080000	0.691542	
mm_137180.1	chr17	23816159	23816359	+	1	NA	NA	NA	12850	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.040000	0.467662	
mm_24460.1	chr3	90623580	90623780	+	1	NA	NA	NA	10786	NM_011313	20200	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0.005000	0.472637	
mm_74942.1	chr8	25840392	25840592	-	1	NA	NA	NA	-35	NM_001286207	23808	Mm.27706	NM_011791	ENSMUSG00000031575	Ash2l	-	ash2 (absent, small, or homeotic)-like (Drosophila)	protein-coding	0.130000	0.746269	
mm_162097.1	chrX	37607520	37607720	-	1	NA	NA	NA	66	NM_001039696	636177	Mm.491809	NM_001039696	ENSMUSG00000079630	Rhox4f	Rhox4.6|Rhox4e|Rhox4h	reproductive homeobox 4F	protein-coding	0.060000	0.512438	
mm_47902.1	chr5	134915400	134915600	-	1	NA	NA	NA	30	NM_020504	57255	Mm.86652	NM_020504	ENSMUSG00000008843	Cldn13	2500004B14Rik	claudin 13	protein-coding	0.020000	0.537313	
mm_28605.1	chr3	94582665	94582865	-	1	NA	NA	NA	-49	NM_029721	76742	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.040000	0.572139	
mm_126524.1	chr15	81936823	81937023	+	1	NA	NA	NA	164	NM_145473	105859	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	0.040000	0.601990	
mm_91707.1	chr10	44099256	44099456	-	1	NA	NA	NA	-71091	NR_001582	70365	Mm.87073	NR_001582	ENSMUSG00000091358	Speer5-ps1	1700007C10Rik|SPEER-5|Speer5-ps	spermatogenesis associated glutamate (E)-rich protein 5, pseudogene 1	pseudo	0.000000	0.368159	
mm_142717.1	chr17	47924591	47924791	-	1	NA	NA	NA	-59	NM_001110825	74123	Mm.240062	NM_028767	ENSMUSG00000023991	Foxp4	1200010K03Rik|2310007G05Rik|mFKHLA	forkhead box P4	protein-coding	0.140000	0.766169	
mm_154090.1	chr19	56815705	56815905	-	1	NA	NA	NA	-2122	NM_170757	213993	Mm.469677	NM_170757	ENSMUSG00000035173	Ccdc186	1810028B20Rik|A630007B06Rik|AI159700|Otg1	coiled-coil domain containing 186	protein-coding	0.025000	0.437811	
mm_101990.1	chr11	50916058	50916258	-	1	NA	NA	NA	18	NM_178447	22678	Mm.259230	NM_009550	ENSMUSG00000049321	Zfp2	9930007F06Rik|Fnp-2|Zfp-2|mKR2|mkr-2|mszf87	zinc finger protein 2	protein-coding	0.090000	0.686567	
mm_81582.1	chr9	110422433	110422633	+	1	NA	NA	NA	2725	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.000000	0.517413	
mm_138367.1	chr17	35000871	35001071	+	1	NA	NA	NA	64	NM_011690	22321	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.145000	0.781095	
mm_79395.1	chr9	54917174	54917374	+	1	NA	NA	NA	-16	NM_177351	235386	Mm.259334	NM_177351	ENSMUSG00000035878	Hykk	Agphd1|C630028N24Rik	hydroxylysine kinase 1	protein-coding	0.070000	0.641791	
mm_71081.1	chr8	34623439	34623639	+	1	NA	NA	NA	16777	NR_040706	330734	Mm.149998	NR_040706	ENSMUSG00000109819	B930018H19Rik	B930018H19	RIKEN cDNA B930018H19 gene	ncRNA	0.000000	0.268657	
mm_75135.1	chr8	35095113	35095313	-	1	NA	NA	NA	-129523	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.010000	0.447761	-63(CATCTTAAAAGG,-,0.00)
mm_42013.1	chr5	108085996	108086196	+	1	NA	NA	NA	7931	NM_001253878	17765	Mm.257149	NM_013827	ENSMUSG00000029267	Mtf2	9230112N11Rik|AA537621|C76717|M96|Pcl2	metal response element binding transcription factor 2	protein-coding	0.005000	0.373134	
mm_46754.1	chr5	112228813	112229013	-	1	NA	NA	NA	35	NR_033657	330166	Mm.44854	NR_003718	ENSMUSG00000097767	Miat	3632434I06|A230057G18Rik|Rncr2|gomafu	myocardial infarction associated transcript (non-protein coding)	ncRNA	0.070000	0.681592	
mm_84777.1	chr9	75683880	75684080	-	1	NA	NA	NA	76	NM_001164790	20255	Mm.2386	NM_009130	ENSMUSG00000032181	Scg3	1B1075|AI385542|Chgd|SgIII	secretogranin III	protein-coding	0.075000	0.661692	
mm_15368.1	chr2	156421020	156421220	+	1	NA	NA	NA	211	NM_001291123	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.125000	0.721393	
mm_155827.1	chrX	100729887	100730087	+	1	NA	NA	NA	140	NM_023608	71584	Mm.283495	NM_023608	ENSMUSG00000019359	Gdpd2	9130017L10Rik|Gde3|Obdpf	glycerophosphodiester phosphodiesterase domain containing 2	protein-coding	0.025000	0.577114	
mm_159138.1	chr2	84886402	84886602	-	1	NA	NA	NA	190	NM_199223	269295	Mm.86447	NM_199223	ENSMUSG00000050896	Rtn4rl2	Ngr2|Ngrh1|Ngrl3	reticulon 4 receptor-like 2	protein-coding	0.065000	0.696517	
mm_127953.1	chr15	11399456	11399656	-	1	NA	NA	NA	102	NM_033074	110960	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	0.090000	0.646766	
mm_45550.1	chr5	73100020	73100220	-	1	NA	NA	NA	93216	NM_173403	231290	Mm.491387	NM_173403	ENSMUSG00000029219	Slc10a4	E130304D01	solute carrier family 10 (sodium/bile acid cotransporter family), member 4	protein-coding	0.010000	0.517413	
mm_66472.1	chr7	44986233	44986433	-	1	NA	NA	NA	87	NM_001252476	15469	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	0.090000	0.701493	62(GGCTCTTTAGGC,-,0.00)
mm_105819.1	chr11	112711259	112711459	-	1	NA	NA	NA	-3	NR_024085	217294	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA	0.050000	0.542289	-34(CACTATAAAAGA,-,0.00)
mm_116802.1	chr13	54055565	54055765	-	1	NA	NA	NA	-7	NM_010076	13488	Mm.54161	NM_010076	ENSMUSG00000021478	Drd1	C030036C15Rik|Drd-1|Drd1a|Gpcr15	dopamine receptor D1	protein-coding	0.105000	0.711443	
mm_17841.1	chr2	34371748	34371948	-	1	NA	NA	NA	197	NM_001290576	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.110000	0.701493	
mm_15111.1	chr2	153649351	153649551	+	1	NA	NA	NA	2	NM_001271747	13436	Mm.89772	NM_010068	ENSMUSG00000027478	Dnmt3b	MmuIIIB	DNA methyltransferase 3B	protein-coding	0.165000	0.830846	
mm_131468.1	chr16	17044110	17044310	+	1	NA	NA	NA	-25929	NM_023249	106369	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee-like 1 (Drosophila)	protein-coding	0.000000	0.432836	
mm_130695.1	chr15	100682890	100683090	-	1	NA	NA	NA	4930	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.020000	0.552239	
mm_122720.1	chr14	52279253	52279453	-	1	NA	NA	NA	42	NM_172601	76338	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	0.055000	0.577114	
mm_150923.1	chr19	46152410	46152610	+	1	NA	NA	NA	-48	NM_178930	107338	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	0.065000	0.582090	
mm_33650.1	chr4	133039452	133039652	+	1	NA	NA	NA	28046	NM_146155	230793	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.130000	0.726368	
mm_46936.1	chr5	114773322	114773522	-	1	NA	NA	NA	69	NM_019834	26431	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0.155000	0.761194	
mm_158513.1	chrX	143183003	143183203	-	1	NA	NA	NA	83509	NM_001040434	209540	Mm.297608	NM_001040434	ENSMUSG00000085584	Rgag1	Gm385|Mar9|Mart9	retrotransposon gag domain containing 1	protein-coding	0.005000	0.402985	-5(TTTTTAATAGTC,+,0.00)
mm_24268.1	chr3	89188257	89188457	+	1	NA	NA	NA	5132	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.040000	0.626866	
mm_160494.1	chr8	129066841	129067041	+	1	NA	NA	NA	-193	NM_029292	75453	Mm.286964	NM_029292	ENSMUSG00000056018	Ccdc7b	1700008F21Rik	coiled-coil domain containing 7B	protein-coding	0.005000	0.402985	
mm_144993.1	chr18	38296714	38296914	+	1	NA	NA	NA	9	NM_001164621	56736	Mm.228903	NM_020012	ENSMUSG00000060450	Rnf14	2310075C09Rik|2610005D23Rik|AA986456|AU041447|D18Ertd188e|D7Bwg0165e|Triad2	ring finger protein 14	protein-coding	0.120000	0.741294	
mm_14437.1	chr2	130633316	130633516	+	1	NA	NA	NA	-3378	NM_001255994	140629	Mm.486003	NM_080562	ENSMUSG00000027300	Ubox5	1500010O06Rik|C330018L13Rik|Rnf37|UIP5|Ubce7ip5|Ube7ip5	U box domain containing 5	protein-coding	0.010000	0.462687	
mm_128569.1	chr15	57659955	57660155	-	1	NA	NA	NA	-34612	NM_199449	387609	Mm.36557	NM_199449	ENSMUSG00000071757	Zhx2	Afr-1|Afr1|Raf|mKIAA0854	zinc fingers and homeoboxes 2	protein-coding	0.010000	0.442786	
mm_54637.1	chr6	38782180	38782380	-	1	NA	NA	NA	55031	NM_001136065	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.000000	0.338308	
mm_120502.1	chr14	66223805	66224005	+	1	NA	NA	NA	-10353	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.010000	0.537313	
mm_96662.1	chr11	69408828	69409028	+	1	NA	NA	NA	4747	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.030000	0.592040	
mm_5812.1	chr1	52500301	52500501	-	1	NA	NA	NA	47	NM_008667	17936	Mm.25903	NM_008667	ENSMUSG00000002881	Nab1	-	Ngfi-A binding protein 1	protein-coding	0.180000	0.865672	
mm_121642.1	chr14	8378811	8379011	-	1	NA	NA	NA	-148	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.010000	0.512438	
mm_126746.1	chr15	85735681	85735881	+	1	NA	NA	NA	5	NM_011144	19013	Mm.212789	NM_011144	ENSMUSG00000022383	Ppara	4933429D07Rik|AW742785|Nr1c1|PPAR-alpha|PPARalpha|Ppar	peroxisome proliferator activated receptor alpha	protein-coding	0.095000	0.706468	
mm_106285.1	chr11	118202522	118202722	-	1	NA	NA	NA	10120	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.040000	0.651741	
mm_117987.1	chr13	100232310	100232510	-	1	NA	NA	NA	14926	NM_010870	17951	Mm.290476	NM_010870	ENSMUSG00000071203	Naip5	Birc1e|Lgn1|Naip-rs3	NLR family, apoptosis inhibitory protein 5	protein-coding	0.000000	0.273632	-7(CTTTTTAAAAAC,+,0.00)
mm_102990.1	chr11	69685451	69685651	-	1	NA	NA	NA	3	NM_001159505	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.025000	0.606965	
mm_43871.1	chr5	143548628	143548828	+	1	NA	NA	NA	22	NM_026050	67238	Mm.383219	NM_026050	ENSMUSG00000083012	Fam220a	1500026F15Rik|2810453I06Rik|AW047776|Acpin1|Sipar	family with sequence similarity 220, member A	protein-coding	0.145000	0.791045	
mm_11873.1	chr2	49230465	49230665	+	1	NA	NA	NA	-15335	NM_001290656	109241	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630|OTTMUSG00000012483	methyl-CpG binding domain protein 5	protein-coding	0.000000	0.363184	
mm_84250.1	chr9	62435674	62435874	-	1	NA	NA	NA	94431	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.005000	0.447761	
mm_65163.1	chr7	19675853	19676053	-	1	NA	NA	NA	1988	NM_001277944	11813	Mm.28394	NM_001277944	ENSMUSG00000002992	Apoc2	apo-CII|apoC-II	apolipoprotein C-II	protein-coding	0.025000	0.557214	
mm_41610.1	chr5	96793266	96793466	+	1	NA	NA	NA	-19	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.030000	0.616915	
mm_60167.1	chr7	40898701	40898901	+	1	NA	NA	NA	-477	NR_040329	320210	Mm.126237	NR_040329	ENSMUSG00000100600	A230077H06Rik	-	RIKEN cDNA A230077H06 gene	ncRNA	0.110000	0.731343	
mm_154709.1	chrX	8277590	8277790	+	1	NA	NA	NA	6309	NM_172479	209837	Mm.6055	NM_172479	ENSMUSG00000031170	Slc38a5	C81234|E330031E14|JM24|SN2	solute carrier family 38, member 5	protein-coding	0.015000	0.527363	
mm_18297.1	chr2	52742093	52742293	-	1	NA	NA	NA	-44	NM_019667	56324	Mm.263639	NM_019667	ENSMUSG00000055371	Stam2	1200004O12Rik|5730456G07Rik|BB145015|Hbp	signal transducing adaptor molecule (SH3 domain and ITAM motif) 2	protein-coding	0.140000	0.761194	
mm_18758.1	chr2	73439951	73440151	-	1	NA	NA	NA	13838	NM_001289722	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.035000	0.597015	
mm_93476.1	chr10	111799696	111799896	-	1	NA	NA	NA	74580	NR_046029	629206	Mm.391444	NR_046029		Gm20758	-	predicted gene, 20758	ncRNA	0.030000	0.487562	
mm_161552.1	chr16	10791963	10792163	-	1	NA	NA	NA	42	NM_008933	19119	Mm.325769	NM_008933	ENSMUSG00000038015	Prm2	AI528784|Prm-2	protamine 2	protein-coding	0.020000	0.572139	
mm_91234.1	chr10	22302664	22302864	-	1	NA	NA	NA	-3956	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.005000	0.437811	
mm_17955.1	chr2	37359153	37359353	-	1	NA	NA	NA	79	NM_026176	67466	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	0.080000	0.572139	
mm_133195.1	chr16	72930835	72931035	+	1	NA	NA	NA	267786	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.005000	0.328358	88(GGGCTTAAGAGG,-,0.00)
mm_1589.1	chr1	74332519	74332719	+	1	NA	NA	NA	9	NM_019999	56695	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0.095000	0.731343	
mm_124123.1	chr14	79661996	79662196	-	1	NA	NA	NA	87	NM_001310655	16840	Mm.46561	NM_010701	ENSMUSG00000022025	Cnmd	Bricd3|ChM-I|Chmd|Lect1	chondromodulin	protein-coding	0.020000	0.562189	
mm_141116.1	chr17	26090034	26090234	-	1	NA	NA	NA	30	NM_011933	26378	Mm.292869	NM_011933	ENSMUSG00000036775	Decr2	-	2-4-dienoyl-Coenzyme A reductase 2, peroxisomal	protein-coding	0.050000	0.611940	
mm_77247.1	chr8	115705525	115705725	-	1	NA	NA	NA	1269	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.030000	0.601990	
mm_15460.1	chr2	157444296	157444496	+	1	NA	NA	NA	20103	NM_001025395	20779	Mm.22845	NM_009271	ENSMUSG00000027646	Src	AW259666|pp60c-src	Rous sarcoma oncogene	protein-coding	0.005000	0.447761	
mm_160301.1	chr7	138989333	138989533	+	1	NA	NA	NA	48703	NM_028708	74004	Mm.334298	NM_028708		Jakmip3	6330417G02Rik|AI593226|mKIAA4091	janus kinase and microtubule interacting protein 3	protein-coding	0.030000	0.621891	
mm_167186.1	chr7	142461399	142461599	-	1	NA	NA	NA	687	NM_001136071	16985	Mm.234003	NM_019391	ENSMUSG00000018819	Lsp1	Lsp-1|WP34|p50|pp52	lymphocyte specific 1	protein-coding	0.000000	0.532338	
mm_116203.1	chr13	32338513	32338713	-	1	NA	NA	NA	-69	NM_146041	218138	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	0.150000	0.771144	
mm_33899.1	chr4	136270922	136271122	+	1	NA	NA	NA	-15047	NM_009557	22704	Mm.1504	NM_009557	ENSMUSG00000051351	Zfp46	AI426962|Mlz-4|Zfp-46|Znf436	zinc finger protein 46	protein-coding	0.005000	0.557214	
mm_164598.1	chr17	28558136	28558336	-	1	NA	NA	NA	265	NR_105935	102465585		NR_105935	ENSMUSG00000099152	Mir6969	Gm27305|mmu-mir-6969	microRNA 6969	ncRNA	0.020000	0.532338	
mm_42597.1	chr5	117413894	117414094	+	1	NA	NA	NA	-8	NM_001312914	333050	Mm.437947	NM_001034873	ENSMUSG00000061578	Ksr2	-	kinase suppressor of ras 2	protein-coding	0.120000	0.731343	
mm_74684.1	chr8	14306880	14307080	-	1	NA	NA	NA	211105	NM_172910	244310	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	discs, large (Drosophila) homolog-associated protein 2	protein-coding	0.000000	0.522388	
mm_162640.1	chr1	191507779	191507979	+	1	NA	NA	NA	67665	NM_001305233	76843	Mm.189102	NM_029766	ENSMUSG00000037474	Dtl	2810047L02Rik|5730564G15Rik|L2dtl|Ramp	denticleless E3 ubiquitin protein ligase	protein-coding	0.000000	0.452736	65(TGGCATTAAAGG,-,0.00)
mm_80891.1	chr9	99612399	99612599	+	1	NA	NA	NA	-3	NM_001077424	333424	Mm.297753	NM_001077424	ENSMUSG00000037953	A4gnt	AV080780|Alpha4gnt|Gm798	alpha-1,4-N-acetylglucosaminyltransferase	protein-coding	0.005000	0.427861	
mm_75538.1	chr8	57322937	57323137	-	1	NA	NA	NA	2054	NM_010402	15111	Mm.430844	NM_010402	ENSMUSG00000038193	Hand2	AI225906|AI661148|Ehand2|Hed|Th2|Thing2|bHLHa26|dHAND	heart and neural crest derivatives expressed transcript 2	protein-coding	0.025000	0.358209	
mm_72983.1	chr8	92918226	92918426	+	1	NA	NA	NA	16931	NM_027112	69543	Mm.440514	NM_027112	ENSMUSG00000078144	Capns2	2310005G05Rik|30K-2	calpain, small subunit 2	protein-coding	0.020000	0.398010	
mm_135982.1	chr16	75092443	75092643	-	1	NA	NA	NA	493518	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.020000	0.512438	-91(GCTCTTAAAGTG,+,0.00)
mm_8181.1	chr1	138080176	138080376	-	1	NA	NA	NA	94850	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.005000	0.472637	
mm_73197.1	chr8	95551691	95551891	+	1	NA	NA	NA	17691	NM_172914	244608	Mm.248902	NM_172914	ENSMUSG00000036598	Ccdc113	4933409I22|BC060957	coiled-coil domain containing 113	protein-coding	0.015000	0.532338	
mm_99718.1	chr11	106276597	106276797	+	1	NA	NA	NA	25	NM_029467	75870	Mm.159608	NM_029467	ENSMUSG00000020712	Tcam1	4930570F09Rik|AI429105	testicular cell adhesion molecule 1	protein-coding	0.090000	0.611940	
mm_139086.1	chr17	46772716	46772916	+	1	NA	NA	NA	181	NM_025966	67101	Mm.358702	NM_025966	ENSMUSG00000062619	2310039H08Rik	-	RIKEN cDNA 2310039H08 gene	protein-coding	0.060000	0.626866	
mm_89423.1	chr10	90917654	90917854	+	1	NA	NA	NA	87911	NM_001347053	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1b|C030032C09Rik|E530015N03Rik|ENSMUSG00000078431|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.000000	0.402985	
mm_104917.1	chr11	99793251	99793451	-	1	NA	NA	NA	-59	NM_001099311	670464	Mm.473676	NM_001099311	ENSMUSG00000078261	Gm11596	OTTMUSG00000002547	predicted gene 11596	protein-coding	0.000000	0.492537	-36(GGATATAAAAGG,-,0.00)
mm_120273.1	chr14	63124508	63124708	+	1	NA	NA	NA	2146	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.005000	0.358209	
mm_114651.1	chr13	77438899	77439099	+	1	NA	NA	NA	-269691	NM_001163420	68675	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding	0.020000	0.343284	
mm_19613.1	chr2	102811539	102811739	-	1	NA	NA	NA	90026	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.005000	0.348259	
mm_71673.1	chr8	60842206	60842406	+	1	NA	NA	NA	-48145	NM_028299	72612	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.005000	0.527363	
mm_88495.1	chr10	77837382	77837582	+	1	NA	NA	NA	1535	NM_001024709	544710	Mm.441890	NM_001024709		Krtap10-10	EG544710	keratin associated protein 10-10	protein-coding	0.025000	0.572139	
mm_111105.1	chr12	80945246	80945446	-	1	NA	NA	NA	53	NR_045057	100504661	Mm.442322	NR_045057		Gm20337	-	predicted gene, 20337	ncRNA	0.055000	0.522388	
mm_154115.1	chr19	57165717	57165917	-	1	NA	NA	NA	31814	NM_001103177	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.005000	0.452736	
mm_105927.1	chr11	115066601	115066801	-	1	NA	NA	NA	-4662	NM_172050	217306	Mm.222667	NM_172050	ENSMUSG00000048498	Cd300e	BC034097|CLM2|Cd300le|TREM5	CD300E molecule	protein-coding	0.005000	0.432836	
mm_54264.1	chr6	28421435	28421635	-	1	NA	NA	NA	189	NM_028900	74375	Mm.332950	NM_028900	ENSMUSG00000029708	Gcc1	4932417P04Rik	golgi coiled coil 1	protein-coding	0.060000	0.681592	
mm_109783.1	chr12	3109975	3110175	-	1	NA	NA	NA	-125716	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.015000	0.402985	
mm_68063.1	chr7	101864064	101864264	-	1	NA	NA	NA	6624	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.000000	0.547264	
mm_154800.1	chrX	13287146	13287346	+	1	NA	NA	NA	6224	NM_010028	13205	Mm.289662	NM_010028	ENSMUSG00000000787	Ddx3x	D1Pas1-rs2|Ddx3|Fin14	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked	protein-coding	0.020000	0.422886	
mm_129281.1	chr15	77153638	77153838	-	1	NA	NA	NA	74	NM_001110830	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.025000	0.522388	58(ACGTTTAAAGGG,-,0.00)
mm_57727.1	chr6	128934226	128934426	-	1	NA	NA	NA	-55	NM_027562	70809	Mm.439891	NM_027562	ENSMUSG00000000248	Clec2g	4632413B12Rik|Clr-c|Clr-d|Clrc|Clrd|Clrx|Ddv10|Ocilrp1	C-type lectin domain family 2, member g	protein-coding	0.010000	0.417910	
mm_128956.1	chr15	74799412	74799612	-	1	NA	NA	NA	456	NM_029627	76486	Mm.273319	NM_029627	ENSMUSG00000044678	Ly6k	2410015A16Rik|3110035B01Rik|mLy-6K	lymphocyte antigen 6 complex, locus K	protein-coding	0.050000	0.606965	
mm_124391.1	chr14	110755026	110755226	-	1	NA	NA	NA	23	NM_175499	239250	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding	0.015000	0.447761	-53(GGGCTTAAAGGC,-,0.00)
mm_81324.1	chr9	108490630	108490830	+	1	NA	NA	NA	54	NM_027804	71472	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	0.115000	0.676617	
mm_122588.1	chr14	50897291	50897491	-	1	NA	NA	NA	-4136	NM_001166651	546611	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	0.035000	0.532338	
mm_69630.1	chr7	137410639	137410839	-	1	NA	NA	NA	17	NM_029886	77252	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.095000	0.696517	
mm_102774.1	chr11	68386728	68386928	-	1	NA	NA	NA	-2	NM_008744	18208	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0.155000	0.786070	
mm_98446.1	chr11	94943628	94943828	+	1	NA	NA	NA	7504	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.025000	0.606965	
mm_18031.1	chr2	38708281	38708481	-	1	NA	NA	NA	3853	NM_001316687	26423	Mm.31387	NM_139051	ENSMUSG00000026751	Nr5a1	Ad4BP|ELP|ELP-3|Ftz-F1|Ftzf1|SF-1|SF1|STF-1	nuclear receptor subfamily 5, group A, member 1	protein-coding	0.045000	0.661692	
mm_38888.1	chr4	149742123	149742323	-	1	NA	NA	NA	-4155	NM_177672	230917	Mm.266704	NM_177672	ENSMUSG00000044700	Tmem201	AV028368|D4Ertd429e|Net5|Samp1	transmembrane protein 201	protein-coding	0.035000	0.373134	
mm_75051.1	chr8	32884809	32885009	-	1	NA	NA	NA	65117	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding	0.060000	0.666667	
mm_74403.1	chr8	3279536	3279736	-	1	NA	NA	NA	-19	NM_001330056	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.085000	0.701493	
mm_143949.1	chr17	86802614	86802814	-	1	NA	NA	NA	48850	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.005000	0.567164	
mm_14247.1	chr2	128063030	128063230	+	1	NA	NA	NA	-62908	NM_207681	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.015000	0.502488	
mm_152503.1	chr19	11165254	11165454	-	1	NA	NA	NA	-34	NM_027074	69416	Mm.72491	NM_027074	ENSMUSG00000024728	1700025F22Rik	-	RIKEN cDNA 1700025F22 gene	protein-coding	0.050000	0.597015	
mm_153929.1	chr19	47373571	47373771	-	1	NA	NA	NA	90740	NM_001164717	14218	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.005000	0.537313	
mm_64599.1	chr7	3206361	3206561	-	1	NA	NA	NA	-12165	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.020000	0.512438	
mm_87746.1	chr10	60266951	60267151	+	1	NA	NA	NA	-10577	NM_001146123	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.030000	0.577114	
mm_146796.1	chr18	20673589	20673789	-	1	NA	NA	NA	8439	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.025000	0.562189	
mm_117920.1	chr13	99433410	99433610	-	1	NA	NA	NA	-20684	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.040000	0.552239	
mm_26515.1	chr3	145891921	145892121	+	1	NA	NA	NA	-32241	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.030000	0.457711	-4(GCCCCTAAAAAC,-,0.00)
mm_58786.1	chr7	16129701	16129901	+	1	NA	NA	NA	-25	NM_001347561	110891	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	0.025000	0.606965	
mm_5681.1	chr1	43163754	43163954	-	1	NA	NA	NA	107	NM_010212	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.105000	0.721393	
mm_33972.1	chr4	137620945	137621145	+	1	NA	NA	NA	26856	NM_130879	170707	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	0.015000	0.457711	
mm_81322.1	chr9	108481621	108481821	+	1	NA	NA	NA	1859	NM_008483	16779	Mm.27560	NM_008483	ENSMUSG00000052911	Lamb2	AW211941|Lamb-2|Lams|npht	laminin, beta 2	protein-coding	0.010000	0.527363	
mm_9851.1	chr1	184732438	184732638	-	1	NA	NA	NA	-45	NM_008250	15284	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.030000	0.348259	-69(GTTTTTAGAGAG,+,0.00)
mm_37100.1	chr4	116627282	116627482	-	1	NA	NA	NA	115	NM_001081475	50927	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.055000	0.606965	
mm_171798.1	chr5	121593419	121593619	-	1	NA	NA	NA	305	NM_009656	11669	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.115000	0.661692	
mm_65793.1	chr7	28894923	28895123	-	1	NA	NA	NA	13367	NM_001110807	60594	Mm.476990	NM_021894	ENSMUSG00000054083	Capn12	CANP 12	calpain 12	protein-coding	0.020000	0.636816	
mm_36201.1	chr4	62360326	62360526	-	1	NA	NA	NA	122	NM_001045528	338355	Mm.357792	NM_001045528	ENSMUSG00000066151	Fkbp15	BB131447|C430014M02Rik|FKBO133|FKBP-133|FKBP-15|FKBP133|mKIAA0674	FK506 binding protein 15	protein-coding	0.105000	0.631841	
mm_45175.1	chr5	51547471	51547671	-	1	NA	NA	NA	6350	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.000000	0.338308	
mm_17385.1	chr2	27027856	27028056	-	1	NA	NA	NA	42	NM_172659	227659	Mm.41203	NM_172659	ENSMUSG00000036067	Slc2a6	A330096C23|F630103L12Rik|Glut6|Glut9	solute carrier family 2 (facilitated glucose transporter), member 6	protein-coding	0.055000	0.616915	
mm_122134.1	chr14	31162099	31162299	-	1	NA	NA	NA	6442	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.010000	0.557214	
mm_157610.1	chrX	53776205	53776405	-	1	NA	NA	NA	89	NM_001009549	333473	Mm.327378	NM_001009549	ENSMUSG00000059334	Zfp36l3	AY661338	zinc finger protein 36, C3H type-like 3	protein-coding	0.040000	0.492537	
mm_117267.1	chr13	64413294	64413494	-	1	NA	NA	NA	-19159	NM_053180	105278	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	0.010000	0.457711	
mm_86526.1	chr10	7810262	7810462	+	1	NA	NA	NA	17468	NM_026141	67418	Mm.38927	NM_026141	ENSMUSG00000015757	Ppil4	3732410E19Rik|3830425H19Rik|AI788954|AW146233|PPIase	peptidylprolyl isomerase (cyclophilin)-like 4	protein-coding	0.000000	0.338308	
mm_84101.1	chr9	58278907	58279107	-	1	NA	NA	NA	25843	NM_026942	69106	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.005000	0.527363	-39(CCCCATATAGCC,+,0.00)
mm_75316.1	chr8	41348536	41348736	-	1	NA	NA	NA	26061	NM_019734	11886	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	0.005000	0.482587	
mm_63732.1	chr7	130867437	130867637	+	1	NA	NA	NA	1627	NM_133942	101476	Mm.323554	NM_133942	ENSMUSG00000040268	Plekha1	AA960558|C920009D07Rik|TAPP1	pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1	protein-coding	0.015000	0.442786	
mm_100452.1	chr11	119675376	119675576	+	1	NA	NA	NA	72571	NM_028898	74370	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	0.005000	0.477612	
mm_152480.1	chr19	11047861	11048061	-	1	NA	NA	NA	2605	NR_102366	107350	Mm.6381	NM_001177351	ENSMUSG00000075010	AW112010	-	expressed sequence AW112010	ncRNA	0.010000	0.442786	
mm_113435.1	chr13	34875483	34875683	+	1	NA	NA	NA	89	NM_013830	19134	Mm.10027	NM_013830	ENSMUSG00000021413	Prpf4b	2610037H07|Prp4|Prp4k|Prpk|cbp143	pre-mRNA processing factor 4B	protein-coding	0.130000	0.666667	
mm_147103.1	chr18	35655121	35655321	-	1	NA	NA	NA	-22	NM_001270646	381148	Mm.297784	NM_001270646	ENSMUSG00000073600	Prob1	Gm1614	proline rich basic protein 1	protein-coding	0.090000	0.691542	-83(GCTTTAAGACGC,+,0.00)
mm_143376.1	chr17	67841949	67842149	-	1	NA	NA	NA	108891	NM_001347410	268970	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0.005000	0.442786	
mm_34618.1	chr4	150488306	150488506	+	1	NA	NA	NA	163768	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.010000	0.507463	67(GAGTAGAAAAGG,-,0.00)
mm_81350.1	chr9	108569814	108570014	+	1	NA	NA	NA	22	NM_026378	67789	Mm.458081	NM_026378	ENSMUSG00000019039	Dalrd3	6330580J24Rik|C77829|mir-425	DALR anticodon binding domain containing 3	protein-coding	0.075000	0.631841	35(GGCCCTTAATGC,-,0.00)
mm_135258.1	chr16	37835709	37835909	-	1	NA	NA	NA	-32591	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.000000	0.417910	
mm_14263.1	chr2	128428239	128428439	+	1	NA	NA	NA	1012	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.020000	0.502488	46(AGCTTTTTAAGC,-,0.00),78(TGCTTTAAAAGT,-,0.00),79(GCTTTAAAAGTG,+,0.00)
mm_70822.1	chr8	23138948	23139148	+	1	NA	NA	NA	18	NM_001310437	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.045000	0.482587	-70(AATTATAAAAGG,-,0.00)
mm_100328.1	chr11	118211881	118212081	+	1	NA	NA	NA	761	NM_001112700	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.005000	0.567164	
mm_143040.1	chr17	56757424	56757624	-	1	NA	NA	NA	24	NM_008738	18188	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	0.165000	0.796020	
mm_149326.1	chr19	10842723	10842923	+	1	NA	NA	NA	279	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.005000	0.532338	
mm_28368.1	chr3	89904303	89904503	-	1	NA	NA	NA	8793	NM_001310676	16194	Mm.2856	NM_010559	ENSMUSG00000027947	Il6ra	CD126|IL-6R|IL-6R-alpha|IL-6RA|Il6r	interleukin 6 receptor, alpha	protein-coding	0.000000	0.417910	
mm_54038.1	chr6	12749338	12749538	-	1	NA	NA	NA	-185	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding	0.065000	0.601990	
mm_50630.1	chr6	50608324	50608524	+	1	NA	NA	NA	-11834	NM_027564	70821	Mm.157323	NM_027564	ENSMUSG00000029828	4921507P07Rik	TISP74	RIKEN cDNA 4921507P07 gene	protein-coding	0.010000	0.557214	
mm_171629.1	chr4	18428319	18428519	-	1	NA	NA	NA	574961	NM_019724	17389	Mm.187315	NM_019724	ENSMUSG00000028226	Mmp16	MT-MMP 3|MT3-MMP|Mt3mmp	matrix metallopeptidase 16	protein-coding	0.030000	0.422886	
mm_74974.1	chr8	27140783	27140983	-	1	NA	NA	NA	-2027	NR_045840	71082	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.005000	0.308458	22(GCCTATAAAGAA,+,0.00),22(GCCTATAAAGAA,-,0.00)
mm_54378.1	chr6	31207051	31207251	-	1	NA	NA	NA	11323	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.000000	0.293532	
mm_107553.1	chr12	41192789	41192989	+	1	NA	NA	NA	168799	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.005000	0.328358	
mm_55571.1	chr6	71392329	71392529	-	1	NA	NA	NA	19002	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.000000	0.338308	
mm_148883.1	chr19	6643612	6643812	+	1	NA	NA	NA	-100642	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.035000	0.512438	
mm_166579.1	chr6	52245828	52246028	+	1	NA	NA	NA	-118	NM_010450	15396	Mm.26954	NM_010450	ENSMUSG00000038210	Hoxa11	Hox-1.9|Hoxa-11	homeobox A11	protein-coding	0.040000	0.522388	
mm_141701.1	chr17	33996994	33997194	-	1	NA	NA	NA	3239	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.010000	0.507463	
mm_166837.1	chr7	19271673	19271873	-	1	NA	NA	NA	81	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.085000	0.621891	
mm_100400.1	chr11	119392915	119393115	+	1	NA	NA	NA	2543	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.035000	0.507463	
mm_23047.1	chr3	34826569	34826769	+	1	NA	NA	NA	54594	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA	0.000000	0.467662	
mm_103160.1	chr11	70454459	70454659	-	1	NA	NA	NA	2628	NM_025397	66172	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0.010000	0.437811	
mm_123269.1	chr14	61360329	61360529	-	1	NA	NA	NA	16	NM_026598	68177	Mm.22758	NM_026598	ENSMUSG00000021928	Ebpl	5730442K12Rik|EBRP	emopamil binding protein-like	protein-coding	0.075000	0.691542	
mm_147675.1	chr18	60648917	60649117	-	1	NA	NA	NA	-14393	NR_045401	328963	Mm.417203	NR_045401		G630071F17Rik	G630071F17	RIKEN cDNA G630071F17 gene	ncRNA	0.015000	0.577114	
mm_150084.1	chr19	29387520	29387720	+	1	NA	NA	NA	20182	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.005000	0.537313	
mm_17281.1	chr2	26122704	26122904	-	1	NA	NA	NA	7	NM_026495	67991	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.195000	0.810945	-60(CCCTTTAAACAG,+,0.00)
mm_28504.1	chr3	92532866	92533066	-	1	NA	NA	NA	-32473	NM_173070	229562	Mm.246590	NM_173070	ENSMUSG00000045566	Sprr4	-	small proline-rich protein 4	protein-coding	0.000000	0.641791	
mm_148715.1	chr19	5812291	5812491	+	1	NA	NA	NA	-9719	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.010000	0.527363	64(CTTTTTCTAGCC,+,0.00)
mm_159993.1	chr6	116208391	116208591	+	1	NA	NA	NA	458	NM_026585	28006	Mm.28524	NM_026585	ENSMUSG00000024104	Washc2	A130095H06|C530005J20Rik|D6Wsu116e|Fam21	WASH complex subunit 2	protein-coding	0.055000	0.597015	
mm_106595.1	chr11	120730736	120730936	-	1	NA	NA	NA	1185	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.030000	0.577114	
mm_118494.1	chr14	13284684	13284884	+	1	NA	NA	NA	4	NM_028052	72003	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.055000	0.666667	
mm_122145.1	chr14	31188671	31188871	-	1	NA	NA	NA	18055	NM_022656	64652	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1	nischarin	protein-coding	0.015000	0.527363	
mm_18926.1	chr2	76745492	76745692	-	1	NA	NA	NA	70277	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.457711	
mm_42576.1	chr5	117240812	117241012	+	1	NA	NA	NA	46652	NM_018858	23980	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	0.040000	0.502488	
mm_85417.1	chr9	103480144	103480344	-	1	NA	NA	NA	84	NM_001002896	107993	Mm.335403	NM_001002896	ENSMUSG00000032556	Bfsp2	AI448593|CP49	beaded filament structural protein 2, phakinin	protein-coding	0.020000	0.606965	
mm_169834.1	chr16	25517952	25518152	+	1	NA	NA	NA	-165713	NM_001127259	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.075000	0.547264	
mm_3063.1	chr1	134111141	134111341	+	1	NA	NA	NA	-1	NM_001284524	71884	Mm.328268	NM_027979	ENSMUSG00000026450	Chit1	2300002L19Rik	chitinase 1 (chitotriosidase)	protein-coding	0.015000	0.527363	-32(CCTTTAAGATCC,+,0.00)
mm_85664.1	chr9	107675350	107675550	-	1	NA	NA	NA	4142	NM_008140	14685	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.015000	0.582090	
mm_75699.1	chr8	68212134	68212334	-	1	NA	NA	NA	-64294	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.000000	0.427861	67(TGCTTTTTAAAG,-,0.00),69(CTTTTTAAAGAA,+,0.00)
mm_8713.1	chr1	158969604	158969804	-	1	NA	NA	NA	-12266	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding	0.005000	0.447761	
mm_67809.1	chr7	98119333	98119533	-	1	NA	NA	NA	60	NM_001256081	17921	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.005000	0.582090	
mm_14815.1	chr2	146200601	146200801	+	1	NA	NA	NA	-21296	NM_016889	53626	Mm.379070	NM_016889	ENSMUSG00000068154	Insm1	IA-1	insulinoma-associated 1	protein-coding	0.025000	0.442786	
mm_87869.1	chr10	61416190	61416390	+	1	NA	NA	NA	-1682	NM_013611	18119	Mm.57195	NM_013611	ENSMUSG00000037171	Nodal	Tg.413d	nodal	protein-coding	0.035000	0.517413	
mm_94390.1	chr11	5525380	5525580	+	1	NA	NA	NA	4839	NM_001271730	22433	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0.015000	0.417910	
mm_101249.1	chr11	20741887	20742087	-	1	NA	NA	NA	-431	NM_181411	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.035000	0.442786	
mm_15945.1	chr2	165884734	165884934	+	1	NA	NA	NA	4	NM_001252584	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.045000	0.582090	
mm_8427.1	chr1	152536368	152536568	-	1	NA	NA	NA	88749	NM_016846	19731	Mm.245270	NM_016846	ENSMUSG00000026482	Rgl1	Rgl|mKIAA0959	ral guanine nucleotide dissociation stimulator,-like 1	protein-coding	0.030000	0.417910	
mm_4163.1	chr1	171029319	171029519	+	1	NA	NA	NA	10493	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.010000	0.422886	
mm_68739.1	chr7	121064096	121064296	-	1	NA	NA	NA	10334	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.000000	0.393035	
mm_57608.1	chr6	128034952	128035152	-	1	NA	NA	NA	108526	NM_175414	109246	Mm.21814	NM_175414	ENSMUSG00000030352	Tspan9	6720474K14Rik|9430079M16Rik|AU018597	tetraspanin 9	protein-coding	0.080000	0.696517	
mm_50785.1	chr6	53978626	53978826	+	1	NA	NA	NA	35	NR_110484	320178	Mm.320413	NR_110484	ENSMUSG00000108060	4921529L05Rik	-	RIKEN cDNA 4921529L05 gene	ncRNA	0.020000	0.422886	
mm_126270.1	chr15	79131631	79131831	+	1	NA	NA	NA	9520	NM_001310581	27660	Mm.390827	NM_138581	ENSMUSG00000033029	1700088E04Rik	ESTJ0827E04	RIKEN cDNA 1700088E04 gene	protein-coding	0.010000	0.557214	
mm_103634.1	chr11	78950006	78950206	-	1	NA	NA	NA	24815	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.020000	0.597015	
mm_56051.1	chr6	86753790	86753990	-	1	NA	NA	NA	-20512	NM_011818	23885	Mm.321452	NM_011818	ENSMUSG00000001157	Gmcl1	2810049L19Rik|Btbd13|DIP|Gcl|Gcl-1|glc-1|mglc-1	germ cell-less, spermatogenesis associated 1	protein-coding	0.030000	0.492537	
mm_88017.1	chr10	67185613	67185813	+	1	NA	NA	NA	-37	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.040000	0.512438	
mm_171792.1	chr5	115802106	115802306	-	1	NA	NA	NA	-43450	NM_007708	12704	Mm.8321	NM_007708	ENSMUSG00000029516	Cit	C030025P15Rik|CRIK|CRIK-SK|Cit-k	citron	protein-coding	0.045000	0.457711	
mm_130314.1	chr15	97167164	97167364	-	1	NA	NA	NA	-79843	NM_172293	239647	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	0.025000	0.492537	
mm_8243.1	chr1	138582219	138582419	-	1	NA	NA	NA	37438	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.015000	0.532338	
mm_166712.1	chr6	117916716	117916916	-	1	NA	NA	NA	-478	NM_001166427	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.055000	0.557214	
mm_36945.1	chr4	108833517	108833717	-	1	NA	NA	NA	-33	NM_027453	70533	Mm.379178	NM_027453	ENSMUSG00000028568	Btf3l4	4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446	basic transcription factor 3-like 4	protein-coding	0.110000	0.721393	
mm_18491.1	chr2	62606142	62606342	-	1	NA	NA	NA	-32221	NM_007986	14089	Mm.41816	NM_007986	ENSMUSG00000000392	Fap	SIMP	fibroblast activation protein	protein-coding	0.035000	0.412935	
mm_50424.1	chr6	48841415	48841615	+	1	NA	NA	NA	32	NM_025326	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.010000	0.606965	
mm_16035.1	chr2	167688647	167688847	+	1	NA	NA	NA	-168	NM_009883	12608	Mm.439656	NM_009883	ENSMUSG00000056501	Cebpb	C/EBPbeta|CRP2|IL-6DBP|LAP|LIP|NF-IL6|NF-M|Nfil6	CCAAT/enhancer binding protein (C/EBP), beta	protein-coding	0.170000	0.820896	
mm_153096.1	chr19	32706782	32706982	-	1	NA	NA	NA	5416	NM_026487	67979	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.025000	0.467662	
mm_104414.1	chr11	94653638	94653838	-	1	NA	NA	NA	16	NM_177752	268465	Mm.358937	NM_177752	ENSMUSG00000039055	Eme1	6820428D13	essential meiotic structure-specific endonuclease 1	protein-coding	0.080000	0.601990	
mm_54486.1	chr6	35307847	35308047	-	1	NA	NA	NA	179	NM_172892	243755	Mm.23666	NM_172892	ENSMUSG00000029843	Slc13a4	9630060C05Rik|SUT-1|SUT1	solute carrier family 13 (sodium/sulfate symporters), member 4	protein-coding	0.005000	0.427861	-37(GCTTTAAGGGAA,+,0.00)
mm_170667.1	chr2	116652638	116652838	+	1	NA	NA	NA	-225953	NM_026104	67356	Mm.131623	NM_026104	ENSMUSG00000027355	Tmco5	1700095F04Rik|Tmco5a	transmembrane and coiled-coil domains 5	protein-coding	0.025000	0.487562	
mm_50523.1	chr6	49043945	49044145	+	1	NA	NA	NA	7527	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.025000	0.532338	
mm_89869.1	chr10	108259655	108259855	+	1	NA	NA	NA	-72434	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.010000	0.348259	
mm_14862.1	chr2	148798516	148798716	+	1	NA	NA	NA	-223	NM_009978	13012	Mm.20435	NM_009978	ENSMUSG00000027442	Cst8	Cres|Cst-rs1	cystatin 8 (cystatin-related epididymal spermatogenic)	protein-coding	0.000000	0.502488	-31(AAGCATAAAAGC,-,0.00)
mm_72546.1	chr8	84001362	84001562	+	1	NA	NA	NA	-244	NM_183097	73453	Mm.75101	NM_183097	ENSMUSG00000046408	1700067K01Rik	-	RIKEN cDNA 1700067K01 gene	protein-coding	0.125000	0.741294	
mm_128795.1	chr15	66812570	66812770	-	1	NA	NA	NA	19159	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.010000	0.562189	
mm_117285.1	chr13	66062840	66063040	-	1	NA	NA	NA	-50513	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.030000	0.442786	
mm_160580.1	chr9	59707720	59707920	+	1	NA	NA	NA	56	NM_001033498	546134	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463	GRAM domain containing 2	protein-coding	0.000000	0.432836	
mm_134581.1	chr16	20405536	20405736	-	1	NA	NA	NA	20758	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.010000	0.447761	
mm_80630.1	chr9	89199226	89199426	+	1	NA	NA	NA	53	NM_007534	12045	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0.005000	0.497512	
mm_167805.1	chr9	123928241	123928441	+	1	NA	NA	NA	40351	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.020000	0.422886	
mm_38564.1	chr4	141695945	141696145	-	1	NA	NA	NA	-10329	NM_023544	69994	Mm.441022	NM_023544	ENSMUSG00000040715	Rsc1a1	1700027M01Rik|OTTMUSG00000010365|Rs1	regulatory solute carrier protein, family 1, member 1	protein-coding	0.010000	0.437811	
mm_164257.1	chr15	100063511	100063711	+	1	NA	NA	NA	24947	NM_001159361	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.050000	0.537313	
mm_92279.1	chr10	71285095	71285295	-	1	NA	NA	NA	67	NM_145420	216080	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	0.140000	0.746269	
mm_94440.1	chr11	6292787	6292987	+	1	NA	NA	NA	329	NM_001252288	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.010000	0.457711	
mm_104881.1	chr11	99521193	99521393	-	1	NA	NA	NA	-35	NM_213730	237934	Mm.484091	NM_213730	ENSMUSG00000064165	Krt39	4732494G06Rik|Ka35	keratin 39	protein-coding	0.015000	0.512438	-78(GGCTATATAAGC,-,0.00)
mm_165221.1	chr2	48691407	48691607	-	1	NA	NA	NA	-122602	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.005000	0.437811	
mm_77491.1	chr8	122575338	122575538	-	1	NA	NA	NA	1469	NM_009698	11821	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	0.025000	0.582090	
mm_65696.1	chr7	28376882	28377082	-	1	NA	NA	NA	2246	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.020000	0.373134	
mm_126222.1	chr15	78926628	78926828	+	1	NA	NA	NA	3	NM_008495	16852	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	0.045000	0.597015	
mm_154485.1	chrM	4567	4767	-	1	NA	NA	NA	NA	NA									0.000000	0.313433	
mm_123538.1	chr14	66814932	66815132	-	1	NA	NA	NA	53568	NM_009955	12934	Mm.352648	NM_009955	ENSMUSG00000022048	Dpysl2	AI851130|Crmp2|DRP2|Musunc33|TOAD-64|Ulip2	dihydropyrimidinase-like 2	protein-coding	0.020000	0.552239	
mm_167572.1	chr9	44268369	44268569	-	1	NA	NA	NA	22	NM_178420	270151	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	0.025000	0.517413	
mm_99175.1	chr11	100859368	100859568	+	1	NA	NA	NA	117	NM_011488	20850	Mm.277403	NM_011488	ENSMUSG00000004043	Stat5a	AA959963|STAT5	signal transducer and activator of transcription 5A	protein-coding	0.020000	0.611940	
mm_148188.1	chr18	78912122	78912322	-	1	NA	NA	NA	197169	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.005000	0.368159	22(GTTTTTAAACAG,+,0.00),75(GGCCCTAAAAAA,-,0.00)
mm_31083.1	chr4	41629874	41630074	+	1	NA	NA	NA	10328	NM_027147	69638	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.025000	0.532338	
mm_156163.1	chrX	130006011	130006211	+	1	NA	NA	NA	256369	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.005000	0.318408	
mm_120354.1	chr14	63992373	63992573	+	1	NA	NA	NA	42	NM_146246	271209	Mm.300655	NM_146246	ENSMUSG00000046049	Rp1l1	BC031365|BE983540|Dcdc4|Rp1hl1	retinitis pigmentosa 1 homolog like 1	protein-coding	0.015000	0.562189	
mm_161576.1	chr16	25683663	25683863	+	1	NA	NA	NA	-2	NM_001127259	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.015000	0.492537	
mm_133236.1	chr16	77037305	77037505	+	1	NA	NA	NA	23336	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.030000	0.457711	
mm_15550.1	chr2	158410069	158410269	+	1	NA	NA	NA	316	NM_001291138	228850	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0.120000	0.691542	
mm_4253.1	chr1	171408116	171408316	+	1	NA	NA	NA	-3097	NM_001305678	22278	Mm.8	NM_009480	ENSMUSG00000026641	Usf1	bHLHb11	upstream transcription factor 1	protein-coding	0.015000	0.457711	
mm_133712.1	chr16	93603739	93603939	+	1	NA	NA	NA	-24	NM_145482	224440	Mm.10628	NM_145482	ENSMUSG00000022948	Setd4	AY037804|C21orf18|ORF21	SET domain containing 4	protein-coding	0.080000	0.621891	
mm_82748.1	chr9	26804389	26804589	-	1	NA	NA	NA	1928	NM_153803	244757	Mm.293696	NM_153803	ENSMUSG00000036395	Glb1l2	-	galactosidase, beta 1-like 2	protein-coding	0.000000	0.527363	
mm_21868.1	chr2	165900829	165901029	-	1	NA	NA	NA	-16091	NM_001252587	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.025000	0.482587	
mm_127.1	chr1	9908562	9908762	+	1	NA	NA	NA	24	NM_177722	240697	Mm.259800	NM_177722	ENSMUSG00000046101	Mcmdc2	6030422M02Rik	minichromosome maintenance domain containing 2	protein-coding	0.065000	0.651741	
mm_6456.1	chr1	74016559	74016759	-	1	NA	NA	NA	107788	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.025000	0.592040	
mm_93733.1	chr10	120112788	120112988	-	1	NA	NA	NA	77	NM_080446	117599	Mm.214703	NM_080446	ENSMUSG00000020228	Helb	AI447783|D10Ertd664e	helicase (DNA) B	protein-coding	0.090000	0.597015	
mm_118803.1	chr14	25298266	25298466	+	1	NA	NA	NA	-155125	NR_045718	75862	Mm.109191	NR_045718		4930572O13Rik	-	RIKEN cDNA 4930572O13 gene	ncRNA	0.025000	0.487562	
mm_46345.1	chr5	102069823	102070023	-	1	NA	NA	NA	-2	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.090000	0.701493	
mm_130491.1	chr15	98803702	98803902	-	1	NA	NA	NA	4123	NM_001013741	13199	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.025000	0.507463	-98(GGGTTTATAAAC,-,0.00),-96(GTTTATAAACAC,+,0.00),-47(ATGTATATAAGG,-,0.00),15(CCCTTTATGCAG,+,0.00)
mm_13036.1	chr2	91070251	91070451	+	1	NA	NA	NA	-36	NM_001290765	68427	Mm.192375	NM_026721	ENSMUSG00000002105	Slc39a13	1100001L14Rik|AA387663|ZIP-13|ZIP13	solute carrier family 39 (metal ion transporter), member 13	protein-coding	0.135000	0.761194	
mm_173202.1	chrX	69024495	69024695	-	1	NA	NA	NA	-131542	NM_001098842	627927	Mm.391264	NM_001098842	ENSMUSG00000056815	Gm6812	EG627927	predicted gene 6812	protein-coding	0.045000	0.532338	
mm_120209.1	chr14	62331998	62332198	+	1	NA	NA	NA	-7	NM_026001	67153	Mm.26040	NM_026001	ENSMUSG00000021932	Rnaseh2b	1110019N06Rik|2610207P08Rik|Dleu8	ribonuclease H2, subunit B	protein-coding	0.110000	0.706468	
mm_37945.1	chr4	133159167	133159367	-	1	NA	NA	NA	28634	NM_153423	242687	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.015000	0.512438	
mm_118666.1	chr14	21848377	21848577	+	1	NA	NA	NA	433	NM_026965	69156	Mm.11827	NM_026965	ENSMUSG00000021773	Comtd1	1810030M08Rik|MT773	catechol-O-methyltransferase domain containing 1	protein-coding	0.055000	0.631841	
mm_163312.1	chr12	5891958	5892158	+	1	NA	NA	NA	515556	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	0.005000	0.507463	-36(GTCTAGAAATGG,-,0.00)
mm_32126.1	chr4	99037370	99037570	+	1	NA	NA	NA	6516	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.025000	0.482587	
mm_158526.1	chrX	143860995	143861195	-	1	NA	NA	NA	-33683	NM_007603	12338	Mm.30290	NM_007603	ENSMUSG00000067276	Capn6	-	calpain 6	protein-coding	0.005000	0.288557	-47(CTTTATATACAG,+,0.00)
mm_45629.1	chr5	76304661	76304861	-	1	NA	NA	NA	31	NM_001289826	12753	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0.170000	0.766169	
mm_14971.1	chr2	152093851	152094051	+	1	NA	NA	NA	-11573	NM_029688	76650	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.050000	0.631841	
mm_35336.1	chr4	31970445	31970645	-	1	NA	NA	NA	6438	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.010000	0.532338	
mm_75313.1	chr8	41217812	41218012	-	1	NA	NA	NA	-2756	NM_145594	234199	Mm.277955	NM_145594	ENSMUSG00000031594	Fgl1	Mfire1	fibrinogen-like protein 1	protein-coding	0.025000	0.557214	
mm_116330.1	chr13	38036836	38037036	-	1	NA	NA	NA	1	NM_027724	71213	Mm.314688	NM_027724	ENSMUSG00000044566	Cage1	4933427I01Rik|Ctag3	cancer antigen 1	protein-coding	0.085000	0.651741	
mm_165901.1	chr4	47284193	47284393	+	1	NA	NA	NA	-68929	NM_001312868	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.005000	0.532338	
mm_16450.1	chr2	180460893	180461093	+	1	NA	NA	NA	15	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.010000	0.577114	
mm_49947.1	chr6	40038183	40038383	+	1	NA	NA	NA	-71970	NM_001004182	434008	Mm.130209	NM_001004182	ENSMUSG00000057716	Tmem178b	EG434008|Gm5567	transmembrane protein 178B	protein-coding	0.000000	0.338308	
mm_124272.1	chr14	103014847	103015047	-	1	NA	NA	NA	18856	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.015000	0.597015	
mm_142837.1	chr17	51792286	51792486	-	1	NA	NA	NA	19668	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.000000	0.427861	53(GCCTTTTAAAAA,-,0.00),54(CCTTTTAAAAAA,+,0.00),86(TCTTTTATGTCC,+,0.00)
mm_19173.1	chr2	84345575	84345775	-	1	NA	NA	NA	79591	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.000000	0.343284	
mm_65135.1	chr7	19562083	19562283	-	1	NA	NA	NA	215	NM_199149	232947	Mm.219662	NM_199149	ENSMUSG00000051403	Ppp1r37	Gm158|Lrrc68	protein phosphatase 1, regulatory subunit 37	protein-coding	0.165000	0.711443	
mm_66821.1	chr7	48557980	48558180	-	1	NA	NA	NA	6	NM_175531	243979	Mm.83689	NM_175531	ENSMUSG00000050425	Mrgprb2	4833406I20Rik|Mgrg14	MAS-related GPR, member B2	protein-coding	0.000000	0.358209	
mm_159771.1	chr5	100395791	100395991	-	1	NA	NA	NA	20343	NM_026969	69162	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	0.015000	0.442786	-20(TTTTTTATAGGG,+,0.00)
mm_90870.1	chr10	8886501	8886701	-	1	NA	NA	NA	-531	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.065000	0.527363	34(CCTCTTAAACTC,+,0.00)
mm_24624.1	chr3	93547846	93548046	+	1	NA	NA	NA	-7171	NM_009112	20194	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	0.035000	0.492537	
mm_66941.1	chr7	61934216	61934416	-	1	NA	NA	NA	5790	NR_030557	100124439		NR_030557	ENSMUSG00000093187	Mir344-2	Mirn344-2|mir-344-2	microRNA 344-2	ncRNA	0.010000	0.273632	-31(CCCTTTATGGTT,+,0.00)
mm_69545.1	chr7	135695770	135695970	-	1	NA	NA	NA	20509	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.015000	0.402985	
mm_124050.1	chr14	77861192	77861392	-	1	NA	NA	NA	13625	NM_025384	66148	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	0.015000	0.472637	
mm_121871.1	chr14	20793954	20794154	-	1	NA	NA	NA	34	NM_001039138	12325	Mm.235182	NM_178597	ENSMUSG00000021820	Camk2g	Camkg	calcium/calmodulin-dependent protein kinase II gamma	protein-coding	0.135000	0.776119	
mm_161000.1	chr11	116189534	116189734	-	1	NA	NA	NA	-9221	NM_027107	69535	Mm.390347	NM_027107	ENSMUSG00000020778	Ten1	2310004N24Rik	TEN1 telomerase capping complex subunit	protein-coding	0.055000	0.522388	
mm_170821.1	chr2	176636246	176636446	-	1	NA	NA	NA	-27	NM_001100415	627914	Mm.466613	NM_001100415		Gm14430	OTTMUSG00000016607	predicted gene 14430	protein-coding	0.015000	0.497512	
mm_114109.1	chr13	54876073	54876273	+	1	NA	NA	NA	-73238	NM_001311128	107448	Mm.23573	NM_153131	ENSMUSG00000025876	Unc5a	Unc5h1|mKIAA1976	unc-5 netrin receptor A	protein-coding	0.015000	0.631841	
mm_135682.1	chr16	52424272	52424472	-	1	NA	NA	NA	28709	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.000000	0.373134	
mm_112992.1	chr13	21721965	21722165	+	1	NA	NA	NA	21	NM_178200	319186	Mm.277425	NM_178200	ENSMUSG00000096807	Hist1h2bm	H2b-291b	histone cluster 1, H2bm	protein-coding	0.050000	0.472637	-32(GTGTATATAGGG,-,0.00)
mm_137554.1	chr17	27622162	27622362	+	1	NA	NA	NA	702	NM_001291046	56409	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0.040000	0.527363	
mm_21606.1	chr2	164254408	164254608	-	1	NA	NA	NA	2135	NM_173377	329557	Mm.118769	NM_173377	ENSMUSG00000050383	Svs3b	9530004A22Rik	seminal vesicle secretory protein 3B	protein-coding	0.005000	0.328358	-73(TGCTTTAAAAAA,-,0.00)
mm_9759.1	chr1	180848832	180849032	-	1	NA	NA	NA	-2219	NM_145943	208768	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.015000	0.532338	82(TGCTTTTTAAGG,-,0.00),84(CTTTTTAAGGAC,+,0.00)
mm_42541.1	chr5	115947837	115948037	+	1	NA	NA	NA	76491	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.015000	0.532338	
mm_132540.1	chr16	37881214	37881414	+	1	NA	NA	NA	12914	NM_177093	320184	Mm.390882	NM_177093	ENSMUSG00000034158	Lrrc58	1810012N18Rik|C330018J07Rik	leucine rich repeat containing 58	protein-coding	0.005000	0.467662	
mm_73049.1	chr8	94355799	94355999	+	1	NA	NA	NA	26691	NM_001205311	20497	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.030000	0.557214	
mm_116846.1	chr13	54749771	54749971	-	1	NA	NA	NA	3	NM_001316710	26913	Mm.41812	NM_012014	ENSMUSG00000069227	Gprin1	GRIN1|Z16	G protein-regulated inducer of neurite outgrowth 1	protein-coding	0.135000	0.746269	
mm_14460.1	chr2	131206987	131207187	+	1	NA	NA	NA	-3273	NM_001291032	69596	Mm.2937	NM_027129	ENSMUSG00000068264	Ap5s1	0610038L13Rik|2310035K24Rik|AW060727|sigma5	adaptor-related protein 5 complex, sigma 1 subunit	protein-coding	0.015000	0.462687	
mm_12085.1	chr2	60209830	60210030	+	1	NA	NA	NA	-6	NM_020575	57438	Mm.260635	NM_020575	ENSMUSG00000026977	March7	Axo|Axot|Gtrgeo17	membrane-associated ring finger (C3HC4) 7	protein-coding	0.170000	0.776119	
mm_36685.1	chr4	96553471	96553671	-	1	NA	NA	NA	80	NM_010008	13110	Mm.98200	NM_010008	ENSMUSG00000052914	Cyp2j6	-	cytochrome P450, family 2, subfamily j, polypeptide 6	protein-coding	0.025000	0.557214	
mm_118342.1	chr13	114458739	114458939	-	1	NA	NA	NA	112	NM_001301373	14313	Mm.4913	NM_008046	ENSMUSG00000021765	Fst	AL033346|FS	follistatin	protein-coding	0.065000	0.606965	-34(ACTTTTAAAAGC,-,0.00),-33(CTTTTAAAAGCT,+,0.00)
mm_126976.1	chr15	93432843	93433043	+	1	NA	NA	NA	34479	NM_001285863	223828	Mm.74208	NM_146062	ENSMUSG00000036167	Pphln1	CR|HSPC206|HSPC232	periphilin 1	protein-coding	0.010000	0.432836	
mm_2290.1	chr1	91413331	91413531	+	1	NA	NA	NA	-209	NM_019479	55927	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	0.055000	0.631841	
mm_89224.1	chr10	87205907	87206107	+	1	NA	NA	NA	147961	NM_029685	76640	Mm.78423	NM_029685	ENSMUSG00000047129	1700113H08Rik	-	RIKEN cDNA 1700113H08 gene	protein-coding	0.005000	0.487562	
mm_81239.1	chr9	107928543	107928743	+	1	NA	NA	NA	174	NM_026338	67722	Mm.390222	NM_026338	ENSMUSG00000066368	Actl11	4921517D21Rik	actin-like 11	protein-coding	0.020000	0.557214	
mm_162174.1	chrX	101654656	101654856	+	1	NA	NA	NA	14538	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.050000	0.492537	
mm_64203.1	chr7	141470509	141470709	+	1	NA	NA	NA	1820	NM_001111050	12476	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0.030000	0.577114	
mm_163683.1	chr13	93711619	93711819	+	1	NA	NA	NA	7456	NR_045086	105364	Mm.443795	NR_045086	ENSMUSG00000087334	AW495222	-	expressed sequence AW495222	ncRNA	0.000000	0.273632	
mm_107625.1	chr12	51690916	51691116	+	1	NA	NA	NA	50	NM_001329698	11782	Mm.386749	NM_021710	ENSMUSG00000020955	Ap4s1	AI314282	adaptor-related protein complex AP-4, sigma 1	protein-coding	0.100000	0.701493	
mm_85116.1	chr9	95407218	95407418	-	1	NA	NA	NA	-48	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.140000	0.776119	
mm_172211.1	chr6	59199610	59199810	+	1	NA	NA	NA	-9160	NM_001081145	68140	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.055000	0.592040	
mm_15824.1	chr2	164568279	164568479	+	1	NA	NA	NA	5077	NM_001177401	629747	Mm.234248	NM_001177401	ENSMUSG00000074596	Spint3	Gm14315|OTTMUSG00000016288	serine peptidase inhibitor, Kunitz type, 3	protein-coding	0.020000	0.502488	
mm_128343.1	chr15	39325719	39325919	-	1	NA	NA	NA	127533	NM_053271	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.010000	0.532338	
mm_113520.1	chr13	37806061	37806261	+	1	NA	NA	NA	-19877	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.010000	0.417910	
mm_8530.1	chr1	154929090	154929290	-	1	NA	NA	NA	170446	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.015000	0.402985	
mm_22286.1	chr2	180207689	180207889	-	1	NA	NA	NA	18070	NM_001081171	16776	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0.015000	0.552239	
mm_104078.1	chr11	86586904	86587104	-	1	NA	NA	NA	-2846	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.442786	
mm_24401.1	chr3	90359245	90359445	+	1	NA	NA	NA	17691	NM_139304	229542	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	0.005000	0.353234	
mm_34477.1	chr4	148374911	148375111	+	1	NA	NA	NA	69740	NM_027873	71707	Mm.292503	NM_027873	ENSMUSG00000047719	Ubiad1	1200002M06Rik|AI426463|AW320947|Tere1	UbiA prenyltransferase domain containing 1	protein-coding	0.005000	0.532338	
mm_88500.1	chr10	77837731	77837931	+	1	NA	NA	NA	1884	NM_001024709	544710	Mm.441890	NM_001024709		Krtap10-10	EG544710	keratin associated protein 10-10	protein-coding	0.000000	0.368159	
mm_53339.1	chr6	129238079	129238279	+	1	NA	NA	NA	-134	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.030000	0.487562	-16(AACTTTAAAAGA,-,0.00)
mm_129372.1	chr15	78119541	78119741	-	1	NA	NA	NA	-361	NM_007583	12300	Mm.277338	NM_007583	ENSMUSG00000019146	Cacng2	AW060990|B230105C07Rik|B930041E13Rik|stargazer|stargazin|stg|wag|waggler	calcium channel, voltage-dependent, gamma subunit 2	protein-coding	0.135000	0.721393	
mm_14456.1	chr2	131186998	131187198	+	1	NA	NA	NA	150	NM_001111075	12531	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	0.040000	0.671642	
mm_164268.1	chr15	101244076	101244276	+	1	NA	NA	NA	-18990	NR_045328	380977	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.005000	0.432836	
mm_1471.1	chr1	69951523	69951723	+	1	NA	NA	NA	8	NM_025728	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	0.035000	0.482587	
mm_98859.1	chr11	97685720	97685920	+	1	NA	NA	NA	-132	NM_001085500	217149	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	0.120000	0.736318	
mm_52623.1	chr6	117174020	117174220	+	1	NA	NA	NA	5585	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.035000	0.582090	
mm_166453.1	chr5	137831315	137831515	-	1	NA	NA	NA	4863	NM_153510	231805	Mm.379385	NM_153510	ENSMUSG00000046245	Pilra	AV021745|FDF03	paired immunoglobin-like type 2 receptor alpha	protein-coding	0.020000	0.572139	
mm_29445.1	chr3	110143714	110143914	-	1	NA	NA	NA	-342	NM_030699	80883	Mm.39262	NM_030699	ENSMUSG00000059857	Ntng1	A930010C08Rik|AI853992|Lmnt1	netrin G1	protein-coding	0.085000	0.597015	
mm_99004.1	chr11	98799108	98799308	+	1	NA	NA	NA	3439	NM_028722	74026	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male-specific lethal 1 homolog (Drosophila)	protein-coding	0.035000	0.522388	
mm_63410.1	chr7	127333708	127333908	+	1	NA	NA	NA	11506	NM_146202	233890	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0.015000	0.482587	
mm_14009.1	chr2	122118447	122118647	+	1	NA	NA	NA	-161	NM_145531	214585	Mm.222303	NM_145531	ENSMUSG00000033396	Spg11	6030465E24Rik|A330015I11|C530005A01Rik	spastic paraplegia 11	protein-coding	0.040000	0.552239	
mm_84605.1	chr9	70141319	70141519	-	1	NA	NA	NA	138	NM_029784	76886	Mm.44355	NM_029784	ENSMUSG00000032224	Fam81a	6430514L14Rik	family with sequence similarity 81, member A	protein-coding	0.180000	0.805970	
mm_77387.1	chr8	120116051	120116251	-	1	NA	NA	NA	1999	NM_001163761	234797	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.015000	0.537313	
mm_31035.1	chr4	40948462	40948662	+	1	NA	NA	NA	9	NM_029814	76959	Mm.212763	NM_029814	ENSMUSG00000028419	Chmp5	2210412K09Rik|AW545668	charged multivesicular body protein 5	protein-coding	0.085000	0.582090	
mm_26341.1	chr3	142547141	142547341	+	1	NA	NA	NA	-12811	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.005000	0.502488	
mm_158974.1	chr1	109983579	109983779	+	1	NA	NA	NA	-44	NM_172853	241201	Mm.213407	NM_172853	ENSMUSG00000026312	Cdh7	9330156F07Rik|CDH7L1	cadherin 7, type 2	protein-coding	0.015000	0.477612	
mm_132903.1	chr16	48872520	48872720	+	1	NA	NA	NA	12	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.015000	0.417910	28(GTGTATTAAAGC,-,0.00)
mm_70188.1	chr7	143780197	143780397	-	1	NA	NA	NA	4203	NM_175534	244238	Mm.183561	NM_175534	ENSMUSG00000048965	Mrgpre	C130069N09Rik|Ebrt3|Mgrf|MrgE	MAS-related GPR, member E	protein-coding	0.005000	0.527363	
mm_118081.1	chr13	103335724	103335924	-	1	NA	NA	NA	-1332	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.020000	0.512438	-35(TAGCATAAAAGG,-,0.00)
mm_18096.1	chr2	44986517	44986717	-	1	NA	NA	NA	36560	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.005000	0.338308	
mm_109288.1	chr12	109559178	109559378	+	1	NA	NA	NA	-4414	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.010000	0.507463	
mm_11623.1	chr2	34774274	34774474	+	1	NA	NA	NA	2284	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.025000	0.457711	
mm_151605.1	chr19	3651818	3652018	-	1	NA	NA	NA	34646	NM_008513	16973	Mm.274581	NM_008513	ENSMUSG00000024913	Lrp5	BMND1|HBM|LR3|LRP7|OPPG|mKIAA4142	low density lipoprotein receptor-related protein 5	protein-coding	0.020000	0.482587	
mm_95784.1	chr11	54909925	54910125	+	1	NA	NA	NA	7171	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.000000	0.517413	
mm_156363.1	chrX	139563108	139563308	+	1	NA	NA	NA	-132	NM_001254761	66889	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	0.005000	0.407960	
mm_4807.1	chr1	185313572	185313772	+	1	NA	NA	NA	91	NR_029908	387211		NR_029908	ENSMUSG00000065562	Mir215	Mirn215|mir-215|mmu-mir-215	microRNA 215	ncRNA	0.035000	0.507463	
mm_162796.1	chr10	76725847	76726047	-	1	NA	NA	NA	97	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.020000	0.636816	
mm_145909.1	chr18	65814544	65814744	+	1	NA	NA	NA	14066	NM_025468	66286	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0.010000	0.452736	
mm_152904.1	chr19	25672153	25672353	-	1	NA	NA	NA	-14	NR_045347	100503074	Mm.140012	NR_045347	ENSMUSG00000101089	2610016A17Rik	2610317C19Rik	RIKEN cDNA 2610016A17 gene	ncRNA	0.075000	0.631841	
mm_137929.1	chr17	32536523	32536723	+	1	NA	NA	NA	-6	NM_024442	70101	Mm.30504	NM_024442	ENSMUSG00000048440	Cyp4f16	2310021J05Rik|AI746515	cytochrome P450, family 4, subfamily f, polypeptide 16	protein-coding	0.005000	0.522388	
mm_12403.1	chr2	70475894	70476094	+	1	NA	NA	NA	1071	NM_022435	64406	Mm.423397	NM_022435	ENSMUSG00000075304	Sp5	-	trans-acting transcription factor 5	protein-coding	0.080000	0.706468	
mm_76660.1	chr8	93269992	93270192	-	1	NA	NA	NA	9644	NM_144930	234564	Mm.29110	NM_144930	ENSMUSG00000031725	Ces1f	AU018778|CesML1|TGH-2	carboxylesterase 1F	protein-coding	0.015000	0.537313	-54(CCTTTTATGTCT,+,0.00)
mm_22990.1	chr3	33807180	33807380	+	1	NA	NA	NA	7097	NM_025978	67120	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	0.005000	0.417910	
mm_165372.1	chr2	128204201	128204401	+	1	NA	NA	NA	76726	NM_001284410	12125	Mm.141083	NM_009754	ENSMUSG00000027381	Bcl2l11	1500006F24Rik|Bim|Bod|bcl2-L-11	BCL2-like 11 (apoptosis facilitator)	protein-coding	0.020000	0.472637	
mm_57784.1	chr6	129268198	129268398	-	1	NA	NA	NA	7071	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.025000	0.487562	
mm_52723.1	chr6	119922112	119922312	+	1	NA	NA	NA	19514	NM_001166381	19365	Mm.149	NM_011236	ENSMUSG00000030166	Rad52	Rad52yh	RAD52 homolog, DNA repair protein	protein-coding	0.005000	0.527363	
mm_125365.1	chr15	39619584	39619784	+	1	NA	NA	NA	-39827	NM_001256384	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.010000	0.373134	
mm_1625.1	chr1	74409113	74409313	+	1	NA	NA	NA	-171	NM_009509	22349	Mm.471601	NM_009509	ENSMUSG00000026175	Vil1	Vil	villin 1	protein-coding	0.015000	0.651741	
mm_19814.1	chr2	110362997	110363197	-	1	NA	NA	NA	-104	NM_026271	67606	Mm.291809	NM_026271	ENSMUSG00000074971	Fibin	1110018M03Rik	fin bud initiation factor homolog (zebrafish)	protein-coding	0.035000	0.587065	
mm_160617.1	chr9	89199162	89199362	+	1	NA	NA	NA	-11	NM_007534	12045	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0.020000	0.512438	
mm_42317.1	chr5	114896876	114897076	+	1	NA	NA	NA	42	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.025000	0.502488	
mm_35284.1	chr4	20866790	20866990	-	1	NA	NA	NA	-88222	NM_172987	269513	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding	0.000000	0.383085	
mm_43849.1	chr5	143329208	143329408	+	1	NA	NA	NA	0	NR_027874	67672	Mm.30983	NR_027874	ENSMUSG00000089889	0610040B10Rik	-	RIKEN cDNA 0610040B10 gene	ncRNA	0.100000	0.542289	
mm_49409.1	chr6	28556284	28556484	+	1	NA	NA	NA	76036	NM_019776	56463	Mm.439987	NM_019776	ENSMUSG00000001424	Snd1	AL033314|Tudor-SN	staphylococcal nuclease and tudor domain containing 1	protein-coding	0.005000	0.333333	
mm_166578.1	chr6	52240541	52240741	-	1	NA	NA	NA	213	NM_001122950	15395	Mm.5	NM_008263	ENSMUSG00000000938	Hoxa10	Hox-1.8|Hoxa-10	homeobox A10	protein-coding	0.055000	0.552239	38(CCTTTTCTGGGC,+,0.00)
mm_116016.1	chr13	24800662	24800862	-	1	NA	NA	NA	-895	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.055000	0.651741	
mm_149123.1	chr19	8990150	8990350	+	1	NA	NA	NA	966	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.050000	0.651741	
mm_10155.1	chr2	4389498	4389698	+	1	NA	NA	NA	-11378	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.020000	0.537313	
mm_115724.1	chr13	16027086	16027286	-	1	NA	NA	NA	15335	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.333333	
mm_91125.1	chr10	19591586	19591786	-	1	NA	NA	NA	-263	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.035000	0.567164	
mm_97447.1	chr11	78188990	78189190	+	1	NA	NA	NA	342	NM_033475	19376	Mm.275864	NM_033475	ENSMUSG00000002059	Rab34	AI326479|Narr|Rah|Rah1	RAB34, member RAS oncogene family	protein-coding	0.120000	0.726368	
mm_88455.1	chr10	77559514	77559714	+	1	NA	NA	NA	-22153	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.030000	0.532338	
mm_95934.1	chr11	58380529	58380729	+	1	NA	NA	NA	-17	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.040000	0.487562	
mm_152301.1	chr19	9085180	9085380	-	1	NA	NA	NA	2676	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.015000	0.522388	
mm_83333.1	chr9	44236797	44236997	-	1	NA	NA	NA	-2851	NM_007619	12402	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.015000	0.507463	
mm_114410.1	chr13	64248562	64248762	+	1	NA	NA	NA	-38	NR_045798	66503	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	0.055000	0.646766	
mm_142252.1	chr17	37569344	37569544	-	1	NA	NA	NA	7	NM_001013575	258096	Mm.159619	NM_001013575	ENSMUSG00000051611	Olfr112	4930580F03Rik|MOR218-4	olfactory receptor 112	protein-coding	0.000000	0.482587	18(CCTTATCTGGCC,+,0.00)
mm_19454.1	chr2	92024417	92024617	-	1	NA	NA	NA	-347	NM_011957	26427	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.065000	0.601990	
mm_152499.1	chr19	11130710	11130910	-	1	NA	NA	NA	68	NM_027058	69369	Mm.391200	NM_027058	ENSMUSG00000024729	1700017D01Rik	-	RIKEN cDNA 1700017D01 gene	protein-coding	0.030000	0.592040	
mm_97699.1	chr11	80177216	80177416	+	1	NA	NA	NA	-6556	NM_028019	71956	Mm.22985	NM_028019	ENSMUSG00000020707	Rnf135	0610037N03Rik|2410006N06Rik	ring finger protein 135	protein-coding	0.010000	0.532338	-3(GGGCAGAAAAGG,-,0.00)
mm_51310.1	chr6	72313891	72314091	+	1	NA	NA	NA	9381	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.000000	0.567164	
mm_2986.1	chr1	133131362	133131562	+	1	NA	NA	NA	296	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.140000	0.706468	
mm_67590.1	chr7	83655273	83655473	-	1	NA	NA	NA	23356	NM_023377	170460	Mm.357953	NM_023377	ENSMUSG00000046027	Stard5	2310058G22Rik|AI607880|D7Ertd152e	StAR-related lipid transfer (START) domain containing 5	protein-coding	0.015000	0.587065	
mm_20950.1	chr2	151718573	151718773	-	1	NA	NA	NA	16665	NM_001160363	108832	Mm.103494	NM_001160363	ENSMUSG00000044364	Tmem74b	5430405G05Rik	transmembrane protein 74B	protein-coding	0.020000	0.532338	
mm_124320.1	chr14	103346651	103346851	-	1	NA	NA	NA	49	NM_207215	105689	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2	protein-coding	0.135000	0.756219	
mm_106119.1	chr11	116359263	116359463	-	1	NA	NA	NA	-24009	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.030000	0.532338	
mm_74803.1	chr8	22593628	22593828	-	1	NA	NA	NA	85	NM_001198998	22335	Mm.227704	NM_011696	ENSMUSG00000008892	Vdac3	-	voltage-dependent anion channel 3	protein-coding	0.155000	0.761194	
mm_148199.1	chr18	79109746	79109946	-	1	NA	NA	NA	-455	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.180000	0.815920	
mm_81631.1	chr9	110857833	110858033	+	1	NA	NA	NA	-34	NM_146227	235631	Mm.102265	NM_146227	ENSMUSG00000048752	Prss50	79H19C|Tsp50	protease, serine 50	protein-coding	0.075000	0.681592	
mm_97540.1	chr11	78885326	78885526	+	1	NA	NA	NA	-35361	NM_010927	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.005000	0.422886	-33(TGGTATAAAAGC,-,0.00)
mm_98961.1	chr11	98626247	98626447	+	1	NA	NA	NA	-13	NM_001007461	450219	Mm.371065	NM_001007461	ENSMUSG00000064224	Gsdma3	Bsk|Dfl|Fgn|Gsdm1l|Gsdm3|Rco2|Rim3	gasdermin A3	protein-coding	0.005000	0.487562	
mm_120824.1	chr14	75151312	75151512	+	1	NA	NA	NA	14987	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.005000	0.502488	
mm_99968.1	chr11	113687006	113687206	+	1	NA	NA	NA	2694	NM_177777	276852	Mm.239566	NM_177777	ENSMUSG00000041623	D11Wsu47e	-	DNA segment, Chr 11, Wayne State University 47, expressed	protein-coding	0.005000	0.492537	
mm_145125.1	chr18	44411144	44411344	+	1	NA	NA	NA	30744	NM_027490	70640	Mm.87629	NM_027490	ENSMUSG00000024472	Dcp2	2410015D23Rik|5730537H01Rik|AL118268	decapping mRNA 2	protein-coding	0.010000	0.477612	
mm_6153.1	chr1	64956713	64956913	-	1	NA	NA	NA	11	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.085000	0.621891	
mm_57081.1	chr6	122581864	122582064	-	1	NA	NA	NA	20480	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.010000	0.343284	
mm_171146.1	chr3	153694275	153694475	-	1	NA	NA	NA	30758	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.015000	0.412935	
mm_168041.1	chrY	90743604	90743804	-	1	NA	NA	NA	11346	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.055000	0.636816	
mm_132203.1	chr16	32550642	32550842	+	1	NA	NA	NA	54461	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.015000	0.442786	
mm_92658.1	chr10	80416539	80416739	-	1	NA	NA	NA	-9818	NM_025650	66594	Mm.379119	NM_025650	ENSMUSG00000020163	Uqcr11	0710008D09Rik|AL022707|Uqcr	ubiquinol-cytochrome c reductase, complex III subunit XI	protein-coding	0.020000	0.611940	
mm_94220.1	chr11	3202533	3202733	+	1	NA	NA	NA	50	NM_023743	74203	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0.125000	0.810945	
mm_85098.1	chr9	94533697	94533897	-	1	NA	NA	NA	4284	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	1190002N15Rik	GoPro49|HASF	RIKEN cDNA 1190002N15 gene	protein-coding	0.015000	0.492537	
mm_85997.1	chr9	112217250	112217450	-	1	NA	NA	NA	1	NM_001177623	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.015000	0.587065	
mm_30190.1	chr3	144691956	144692156	-	1	NA	NA	NA	28279	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.005000	0.412935	
mm_50106.1	chr6	41533412	41533612	+	1	NA	NA	NA	11736	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.442786	
mm_595.1	chr1	39551837	39552037	+	1	NA	NA	NA	-3097	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.035000	0.557214	
mm_31146.1	chr4	43384180	43384380	+	1	NA	NA	NA	2298	NM_001037709	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.010000	0.472637	
mm_164529.1	chr17	6007965	6008165	-	1	NA	NA	NA	485	NM_001290698	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.035000	0.492537	
mm_64664.1	chr7	4164944	4165144	-	1	NA	NA	NA	-345	NM_021454	58804	Mm.34268	NM_021454	ENSMUSG00000063838	Cdc42ep5	1700027J19Rik|2010007O02Rik|Borg3|C85526|CEP5	CDC42 effector protein (Rho GTPase binding) 5	protein-coding	0.005000	0.492537	
mm_164924.1	chr18	77794609	77794809	+	1	NA	NA	NA	159	NM_013831	19201	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.135000	0.736318	
mm_102653.1	chr11	63463865	63464065	-	1	NA	NA	NA	-77896	NR_105772	102466632		NR_105772	ENSMUSG00000098829	Mir6354	Gm27282|mmu-mir-6354	microRNA 6354	ncRNA	0.045000	0.517413	
mm_82614.1	chr9	21760207	21760407	-	1	NA	NA	NA	-21	NM_026282	67629	Mm.295642	NM_026282	ENSMUSG00000074476	Spc24	2410030K01Rik|AV109292|Spbc24	SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)	protein-coding	0.100000	0.641791	
mm_110474.1	chr12	51830101	51830301	-	1	NA	NA	NA	-665	NM_144788	207304	Mm.249391	NM_144788	ENSMUSG00000035247	Hectd1	A630086P08Rik|AI844876|b2b327Clo|opm	HECT domain containing 1	protein-coding	0.050000	0.507463	
mm_66370.1	chr7	43656517	43656717	-	1	NA	NA	NA	3544	NM_031181	83382	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.020000	0.522388	
mm_162991.1	chr11	24637970	24638170	+	1	NA	NA	NA	92652	NR_033491	100038617	Mm.387376	NR_033491	ENSMUSG00000073103	Gm10466	ENSMUSG00000073103	predicted gene 10466	ncRNA	0.000000	0.398010	
mm_171319.1	chr3	96240193	96240393	-	1	NA	NA	NA	41	NM_013549	15267	Mm.5220	NM_013549	ENSMUSG00000064220	Hist2h2aa1	AI448581|H2a-614|H2a-615|Hist2	histone cluster 2, H2aa1	protein-coding	0.120000	0.621891	-33(GTCTATAAAAGG,-,0.00)
mm_124734.1	chr15	6580843	6581043	+	1	NA	NA	NA	1096	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.040000	0.601990	
mm_92699.1	chr10	80701789	80701989	-	1	NA	NA	NA	-69	NM_172457	208228	Mm.49309	NM_172457	ENSMUSG00000003348	Mob3a	5330417K06Rik|A630029F06|AV218468|Mobkl2a	MOB kinase activator 3A	protein-coding	0.125000	0.711443	-41(TTCCCTTTAAGG,-,0.00),-40(TCCCTTTAAGGG,-,0.00),-39(CCCTTTAAGGGA,+,0.00),-38(CCTTTAAGGGAA,+,0.00)
mm_169375.1	chr14	37000767	37000967	-	1	NA	NA	NA	-32103	NM_027045	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.030000	0.532338	
mm_126956.1	chr15	92161443	92161643	+	1	NA	NA	NA	186	NM_001159647	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.010000	0.472637	
mm_29469.1	chr3	115497376	115497576	-	1	NA	NA	NA	217579	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.000000	0.318408	
mm_137437.1	chr17	26507398	26507598	+	1	NA	NA	NA	974	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.025000	0.532338	
mm_159377.1	chr3	89418485	89418685	+	1	NA	NA	NA	34	NM_011368	20416	Mm.86595	NM_011368	ENSMUSG00000042626	Shc1	Shc|ShcA|p66|p66shc	src homology 2 domain-containing transforming protein C1	protein-coding	0.055000	0.597015	
mm_64950.1	chr7	16387683	16387883	-	1	NA	NA	NA	113	NM_001285892	56459	Mm.258530	NM_019748	ENSMUSG00000052833	Sae1	2400010M20Rik|2610044L12Rik|AL033372|AOS1|AW743391|D7Ertd177e|HSPC140|Sua1|Uble1a	SUMO1 activating enzyme subunit 1	protein-coding	0.125000	0.711443	
mm_29126.1	chr3	105426466	105426666	-	1	NA	NA	NA	-25764	NM_001039347	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	0.020000	0.502488	
mm_38091.1	chr4	134227298	134227498	-	1	NA	NA	NA	-15	NM_177866	329954	Mm.79072	NM_177866	ENSMUSG00000048003	Catsper4	4933412L05	cation channel, sperm associated 4	protein-coding	0.010000	0.477612	
mm_165418.1	chr2	148397379	148397579	+	1	NA	NA	NA	2102	NM_009219	20608	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0.010000	0.472637	
mm_28039.1	chr3	83841028	83841228	-	1	NA	NA	NA	480	NM_011905	24088	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.040000	0.552239	
mm_108458.1	chr12	82770630	82770830	+	1	NA	NA	NA	153231	NM_001282061	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0.000000	0.417910	
mm_26057.1	chr3	135825981	135826181	+	1	NA	NA	NA	291	NM_001135150	67547	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.050000	0.601990	
mm_18010.1	chr2	38287117	38287317	-	1	NA	NA	NA	167	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.105000	0.781095	
mm_24066.1	chr3	87915667	87915867	+	1	NA	NA	NA	-3777	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.025000	0.417910	
mm_95872.1	chr11	58051216	58051416	+	1	NA	NA	NA	42252	NM_028451	73158	Mm.248843	NM_028451	ENSMUSG00000037331	Larp1	1810024J12Rik|3110040D16Rik|Larp|mKIAA0731	La ribonucleoprotein domain family, member 1	protein-coding	0.005000	0.517413	
mm_119036.1	chr14	30558696	30558896	+	1	NA	NA	NA	9665	NM_009388	21881	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0.035000	0.577114	
mm_3486.1	chr1	150105647	150105847	+	1	NA	NA	NA	5716	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.358209	
mm_73967.1	chr8	120488456	120488656	+	1	NA	NA	NA	-310	NM_198671	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.025000	0.492537	
mm_106183.1	chr11	116705068	116705268	-	1	NA	NA	NA	-10508	NM_009180	20446	Mm.3947	NM_009180	ENSMUSG00000057286	St6galnac2	II|ST6GalNAc|Siat7|Siat7b	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	protein-coding	0.020000	0.487562	
mm_19918.1	chr2	115864231	115864431	-	1	NA	NA	NA	200288	NM_001346044	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.010000	0.527363	
mm_27768.1	chr3	72899950	72900150	-	1	NA	NA	NA	66816	NM_001081137	69983	Mm.261054	NM_001081137	ENSMUSG00000027790	Sis	2010204N08Rik|SI|Si-s	sucrase isomaltase (alpha-glucosidase)	protein-coding	0.000000	0.407960	
mm_119964.1	chr14	55478718	55478918	+	1	NA	NA	NA	60	NM_030686	28200	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	0.065000	0.671642	
mm_7692.1	chr1	128729956	128730156	-	1	NA	NA	NA	-137757	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.000000	0.398010	
mm_63025.1	chr7	121035463	121035663	+	1	NA	NA	NA	1118	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.015000	0.472637	
mm_121068.1	chr14	95881167	95881367	+	1	NA	NA	NA	1	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	0.005000	0.368159	
mm_7676.1	chr1	128589027	128589227	-	1	NA	NA	NA	3172	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.030000	0.542289	
mm_156744.1	chrX	159961680	159961880	+	1	NA	NA	NA	19087	NM_001290664	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.030000	0.437811	-11(CCCTTTCAAGCC,+,0.00)
mm_167000.1	chr7	47050548	47050748	+	1	NA	NA	NA	8	NM_026436	67893	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.100000	0.676617	
mm_169677.1	chr15	66851642	66851842	+	1	NA	NA	NA	-19913	NM_009192	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.005000	0.412935	
mm_33005.1	chr4	120615724	120615924	+	1	NA	NA	NA	27079	NM_001101603	667063	Mm.90231	NM_001101603	ENSMUSG00000091297	Gm8439	EG667063|Gm1664	predicted gene 8439	protein-coding	0.020000	0.522388	
mm_85979.1	chr9	112164979	112165179	-	1	NA	NA	NA	20870	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.010000	0.318408	
mm_128598.1	chr15	58164746	58164946	-	1	NA	NA	NA	23480	NM_001326599	76773	Mm.26771	NM_029734	ENSMUSG00000022359	Wdyhv1	2410187C16Rik|AU014961|AW550036|Ntaq1	WDYHV motif containing 1	protein-coding	0.010000	0.447761	
mm_2607.1	chr1	120261320	120261520	+	1	NA	NA	NA	3860	NM_133186	68428	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.005000	0.457711	
mm_12490.1	chr2	71786803	71787003	+	1	NA	NA	NA	-36	NM_008397	16403	Mm.225096	NM_008397	ENSMUSG00000027111	Itga6	5033401O05Rik|AI115430|Cd49f|VLA-6	integrin alpha 6	protein-coding	0.120000	0.746269	
mm_36967.1	chr4	109406154	109406354	-	1	NA	NA	NA	3	NR_131195	102635290	Mm.427859	NR_131195		Ttc39aos1	Gm12750|OTTMUSG00000008290|lincRNA-EPS	Ttc39a opposite strand RNA 1	ncRNA	0.005000	0.542289	
mm_115936.1	chr13	23621863	23622063	-	1	NA	NA	NA	595	NM_015787	50709	Mm.170587	NM_015787	ENSMUSG00000051627	Hist1h1e	H1-4|H1.4|H1e|H1f4|H1s-4|H1var2	histone cluster 1, H1e	protein-coding	0.035000	0.527363	
mm_86358.1	chr9	123717457	123717657	-	1	NA	NA	NA	0	NM_033322	93730	Mm.378263	NM_033322	ENSMUSG00000025245	Lztfl1	5530402H04Rik|6130400H19Rik|AI414725|AW048545	leucine zipper transcription factor-like 1	protein-coding	0.110000	0.686567	
mm_128628.1	chr15	59051892	59052092	-	1	NA	NA	NA	30034	NM_001146180	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.025000	0.492537	
mm_43718.1	chr5	139423079	139423279	+	1	NA	NA	NA	0	NM_029771	76854	Mm.389706	NM_029771	ENSMUSG00000053647	Gper1	6330420K13Rik|CMKRL2|Ceprl|FEG-1|GPCR-Br|Gper|Gpr30	G protein-coupled estrogen receptor 1	protein-coding	0.030000	0.606965	-79(TGGCCTTAAAGG,-,0.00),-78(GGCCTTAAAGGG,-,0.00),-76(CCTTAAAGGGAG,+,0.00),-32(GTCTATAAAGGA,-,0.00)
mm_150472.1	chr19	38578921	38579121	+	1	NA	NA	NA	54824	NM_019588	74055	Mm.34031	NM_019588	ENSMUSG00000024998	Plce1	4933403A21Rik|PLCepsilon|Plce|mKIAA1516	phospholipase C, epsilon 1	protein-coding	0.005000	0.537313	
mm_75365.1	chr8	45294759	45294959	-	1	NA	NA	NA	-24	NM_008455	16621	Mm.482691	NM_008455	ENSMUSG00000109764	Klkb1	APS|Kal-3|Kal3|Klk3|PSA	kallikrein B, plasma 1	protein-coding	0.015000	0.462687	
mm_36118.1	chr4	58911944	58912144	-	1	NA	NA	NA	681	NM_172381	230249	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|mKIAA0368	expressed sequence AI314180	protein-coding	0.215000	0.830846	
mm_46378.1	chr5	103911136	103911336	-	1	NA	NA	NA	-7	NM_178741	246293	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0.165000	0.786070	
mm_66318.1	chr7	41320411	41320611	-	1	NA	NA	NA	36184	NM_001033782	434172	Mm.247214	NM_001033782	ENSMUSG00000072259	Gm5592	EG434172	predicted gene 5592	protein-coding	0.035000	0.512438	
mm_38466.1	chr4	140620569	140620769	-	1	NA	NA	NA	28087	NM_001112723	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.010000	0.552239	
mm_40378.1	chr5	52368394	52368594	+	1	NA	NA	NA	4690	NM_011435	20657	Mm.2407	NM_011435	ENSMUSG00000072941	Sod3	AI314465|EC-SOD	superoxide dismutase 3, extracellular	protein-coding	0.105000	0.681592	
mm_116822.1	chr13	54589968	54590168	-	1	NA	NA	NA	6	NM_178605	28126	Mm.439993	NM_178605	ENSMUSG00000025869	Nop16	AA409471|D13Wsu177e	NOP16 nucleolar protein	protein-coding	0.055000	0.522388	
mm_127485.1	chr15	101286520	101286720	+	1	NA	NA	NA	2319	NM_026566	68118	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0.010000	0.537313	
mm_56475.1	chr6	99052761	99052961	-	1	NA	NA	NA	-24563	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.015000	0.447761	
mm_49487.1	chr6	29540789	29540989	+	1	NA	NA	NA	11607	NM_001252382	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.005000	0.278607	
mm_160115.1	chr7	26686113	26686313	-	1	NA	NA	NA	217	NM_001081148	243881	Mm.294678	NM_001081148	ENSMUSG00000040650	Cyp2b23	EG243881	cytochrome P450, family 2, subfamily b, polypeptide 23	protein-coding	0.000000	0.462687	
mm_121426.1	chr14	120306353	120306553	+	1	NA	NA	NA	30784	NM_175341	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding	0.035000	0.552239	-36(AGCTCTATAAGA,-,0.00)
mm_37730.1	chr4	129572313	129572513	-	1	NA	NA	NA	1228	NM_001162433	16818	Mm.293753	NM_010693	ENSMUSG00000000409	Lck	Hck-3|Lsk|Lskt|p56<lck>|p56Lck	lymphocyte protein tyrosine kinase	protein-coding	0.005000	0.522388	
mm_44846.1	chr5	34187610	34187810	-	1	NA	NA	NA	0	NM_010753	17122	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.105000	0.696517	
mm_62463.1	chr7	101663508	101663708	+	1	NA	NA	NA	-160	NM_009191	20480	Mm.3990	NM_009191	ENSMUSG00000001829	Clpb	AL118244|Skd3	ClpB caseinolytic peptidase B	protein-coding	0.035000	0.532338	
mm_97020.1	chr11	71750586	71750786	+	1	NA	NA	NA	-17	NM_177618	216881	Mm.48648	NM_177618	ENSMUSG00000020811	Wscd1	mKIAA0523	WSC domain containing 1	protein-coding	0.055000	0.592040	
mm_85024.1	chr9	88438844	88439044	-	1	NA	NA	NA	7	NM_172926	244962	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0.105000	0.731343	
mm_78955.1	chr9	45138790	45138990	+	1	NA	NA	NA	-152	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.100000	0.741294	
mm_102987.1	chr11	69685205	69685405	-	1	NA	NA	NA	249	NM_001159505	69583	Mm.8983	NM_023517	ENSMUSG00000089669	Tnfsf13	2310026N09Rik|April|Tall2|Tnlg7b|Trdl1	tumor necrosis factor (ligand) superfamily, member 13	protein-coding	0.010000	0.547264	
mm_44384.1	chr5	17828767	17828967	-	1	NA	NA	NA	7029	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.020000	0.492537	
mm_44945.1	chr5	36553946	36554146	-	1	NA	NA	NA	-23423	NM_001113364	100855	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.010000	0.472637	
mm_91487.1	chr10	37135417	37135617	-	1	NA	NA	NA	3409	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.010000	0.278607	
mm_62168.1	chr7	97280226	97280426	+	1	NA	NA	NA	45638	NM_001177412	244144	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.005000	0.457711	
mm_114.1	chr1	9783629	9783829	+	1	NA	NA	NA	-14401	NM_133220	170755	Mm.336410	NM_133220	ENSMUSG00000025915	Sgk3	2510015P22Rik|A330005P07Rik|Cisk|fy|fz	serum/glucocorticoid regulated kinase 3	protein-coding	0.015000	0.502488	
mm_43886.1	chr5	143902001	143902201	+	1	NA	NA	NA	-7034	NM_001310772	66729	Mm.439817	NM_025732	ENSMUSG00000029607	Ankrd61	4921520G13Rik	ankyrin repeat domain 61	protein-coding	0.000000	0.447761	-65(AGACTTAAAAGG,-,0.00)
mm_72175.1	chr8	72318804	72319004	+	1	NA	NA	NA	-158	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.125000	0.696517	25(GCTTATATACCG,+,0.00)
mm_9501.1	chr1	173730088	173730288	-	1	NA	NA	NA	11621	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.005000	0.452736	
mm_42664.1	chr5	119670878	119671078	+	1	NA	NA	NA	116	NM_198052	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.085000	0.626866	
mm_85379.1	chr9	103225961	103226161	-	1	NA	NA	NA	4225	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.020000	0.557214	
mm_37646.1	chr4	128618537	128618737	-	1	NA	NA	NA	-18	NM_205823	384059	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0.030000	0.527363	
mm_17310.1	chr2	26389195	26389395	-	1	NA	NA	NA	21	NM_001085407	68112	Mm.253771	NM_026563	ENSMUSG00000026927	Sdccag3	C330016H24Rik|C630038K21Rik	serologically defined colon cancer antigen 3	protein-coding	0.185000	0.791045	
mm_86272.1	chr9	121759812	121760012	-	1	NA	NA	NA	31	NR_033503	320301	Mm.373883	NR_033503		E530011L22Rik	-	RIKEN cDNA E530011L22 gene	ncRNA	0.155000	0.771144	-35(GCTTAAAGGGCC,+,0.00)
mm_43632.1	chr5	138194202	138194402	+	1	NA	NA	NA	-12	NM_177878	330216	Mm.19719	NM_177878	ENSMUSG00000049285	Mblac1	-	metallo-beta-lactamase domain containing 1	protein-coding	0.045000	0.547264	
mm_18012.1	chr2	38287219	38287419	-	1	NA	NA	NA	65	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.145000	0.776119	
mm_58913.1	chr7	17672196	17672396	+	1	NA	NA	NA	-17	NR_002857	232919	Mm.153893	NR_002857	ENSMUSG00000108558	Psg-ps1	AV036018|Cea-6|Cea6	pregnancy specific glycoprotein pseudogene 1	pseudo	0.005000	0.492537	
mm_125997.1	chr15	76440967	76441167	+	1	NA	NA	NA	7853	NR_105919	102465576		NR_105919	ENSMUSG00000099260	Mir6954	Gm27770|mmu-mir-6954	microRNA 6954	ncRNA	0.000000	0.378109	-6(TTTTTAATAGAG,+,0.00)
mm_146083.1	chr18	70930688	70930888	+	1	NA	NA	NA	362496	NM_010773	17191	Mm.322	NM_010773	ENSMUSG00000024513	Mbd2	MBD2a	methyl-CpG binding domain protein 2	protein-coding	0.005000	0.343284	
mm_9933.1	chr1	189922282	189922482	-	1	NA	NA	NA	-94	NM_026796	226830	Mm.156895	NM_026796	ENSMUSG00000026603	Smyd2	1110020E07Rik|4930402C15|KMT3C|Zmynd14	SET and MYND domain containing 2	protein-coding	0.165000	0.805970	
mm_87265.1	chr10	41526736	41526936	+	1	NA	NA	NA	7336	NM_016898	53599	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.010000	0.442786	56(GGCTATATAAAC,-,0.00)
mm_150351.1	chr19	34644239	34644439	+	1	NA	NA	NA	3450	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.000000	0.437811	
mm_16620.1	chr2	5671418	5671618	-	1	NA	NA	NA	4528	NM_001290376	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.000000	0.407960	
mm_156003.1	chrX	106703755	106703955	+	1	NA	NA	NA	-100176	NM_001281859	58861	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	0.015000	0.402985	
mm_151270.1	chr19	55180704	55180904	+	1	NA	NA	NA	-81	NM_009348	21684	Mm.42139	NM_009348	ENSMUSG00000024979	Tectb	Tctnb	tectorin beta	protein-coding	0.015000	0.502488	
mm_166518.1	chr6	17748996	17749196	+	1	NA	NA	NA	-74	NM_001083315	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.035000	0.522388	
mm_61813.1	chr7	87281385	87281585	+	1	NA	NA	NA	34836	NM_001285833	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	0.005000	0.298507	
mm_127779.1	chr15	3540852	3541052	-	1	NA	NA	NA	40890	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.000000	0.333333	
mm_89264.1	chr10	87859542	87859742	+	1	NA	NA	NA	590	NM_010512	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.035000	0.477612	43(GTTTTAAGAGAC,+,0.00)
mm_79779.1	chr9	62851541	62851741	+	1	NA	NA	NA	-6463	NM_001102468	75600	Mm.440576	NM_138304	ENSMUSG00000032246	Calml4	2010002G05Rik	calmodulin-like 4	protein-coding	0.005000	0.512438	
mm_169445.1	chr14	57798153	57798353	+	1	NA	NA	NA	35	NM_001142441	100041953	Mm.290178	NM_001142441	ENSMUSG00000061104	Sap18b	ENSMUSG00000061104|Gm10094	Sin3-associated polypeptide 18B	protein-coding	0.115000	0.621891	
mm_55911.1	chr6	83775465	83775665	-	1	NA	NA	NA	247	NM_009357	21766	Mm.28371	NM_009357	ENSMUSG00000014748	Tex261	3110001O07Rik|AA409339|AI480706|AL033351|TEG-261	testis expressed gene 261	protein-coding	0.095000	0.686567	
mm_39271.1	chr5	3657115	3657315	+	1	NA	NA	NA	211	NM_029154	75010	Mm.85064	NM_029141	ENSMUSG00000014529	Tmbim7	4930403J02Rik|4930500J03Rik|4930511M11Rik|Lfg5|Lgf5|Tmbim1b	transmembrane BAX inhibitor motif containing 7	protein-coding	0.005000	0.497512	
mm_162867.1	chr10	93518957	93519157	-	1	NA	NA	NA	20976	NM_027908	71761	Mm.244518	NM_027908	ENSMUSG00000015890	Amdhd1	1300019J08Rik	amidohydrolase domain containing 1	protein-coding	0.005000	0.507463	
mm_72114.1	chr8	71671734	71671934	+	1	NA	NA	NA	-77	NM_001029873	382018	Mm.334606	NM_001029873	ENSMUSG00000034799	Unc13a	2410078G03Rik|Munc13-1	unc-13 homolog A (C. elegans)	protein-coding	0.110000	0.656716	-15(CGCCTTAAAGGG,-,0.00),-14(GCCTTAAAGGGC,+,0.00),-13(CCTTAAAGGGCT,+,0.00)
mm_125289.1	chr15	36726766	36726966	+	1	NA	NA	NA	64066	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.020000	0.557214	
mm_88140.1	chr10	69398931	69399131	+	1	NA	NA	NA	-46119	NM_007659	12534	Mm.281367	NM_007659	ENSMUSG00000019942	Cdk1	Cdc2|Cdc2a|p34<CDC2>	cyclin-dependent kinase 1	protein-coding	0.100000	0.691542	
mm_125925.1	chr15	76243406	76243606	+	1	NA	NA	NA	-66	NM_001163575	671535	Mm.373750	NM_001163575	ENSMUSG00000063268	Parp10	-	poly (ADP-ribose) polymerase family, member 10	protein-coding	0.005000	0.502488	
mm_150541.1	chr19	39309682	39309882	+	1	NA	NA	NA	22697	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.005000	0.268657	
mm_18026.1	chr2	38623275	38623475	-	1	NA	NA	NA	20531	NM_011187	19177	Mm.389251	NM_011187	ENSMUSG00000026750	Psmb7	AU020723|MC14	proteasome (prosome, macropain) subunit, beta type 7	protein-coding	0.005000	0.348259	
mm_88020.1	chr10	67185930	67186130	+	1	NA	NA	NA	280	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.040000	0.497512	
mm_168162.1	chr10	45469540	45469740	-	1	NA	NA	NA	561	NM_001031772	380669	Mm.440328	NM_001031772	ENSMUSG00000063804	Lin28b	2810403D23Rik|D030047M17Rik|Lin-28.2	lin-28 homolog B (C. elegans)	protein-coding	0.020000	0.442786	-100(ACTTTTATACAC,+,0.00)
mm_156621.1	chrX	153832213	153832413	+	1	NA	NA	NA	20	NM_001005370	278240	Mm.293363	NM_001005370	ENSMUSG00000046550	Spin2c	BC068162|SPIN-2C|Spin2	spindlin family, member 2C	protein-coding	0.050000	0.597015	
mm_61082.1	chr7	51622076	51622276	+	1	NA	NA	NA	346	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.025000	0.452736	
mm_112497.1	chr13	7446429	7446629	+	1	NA	NA	NA	-756337	NM_001289530	94191	Mm.425794	NM_052977	ENSMUSG00000052551	Adarb2	Adar3|RED2	adenosine deaminase, RNA-specific, B2	protein-coding	0.000000	0.507463	
mm_47316.1	chr5	122459512	122459712	-	1	NA	NA	NA	37168	NM_019805	56317	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0.010000	0.487562	
mm_22440.1	chr2	181693513	181693713	-	1	NA	NA	NA	197	NM_001291206	56470	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0.060000	0.626866	
mm_43965.1	chr5	145280447	145280647	+	1	NA	NA	NA	-2796	NM_001081431	666311	Mm.260773	NM_001081431	ENSMUSG00000070420	Zscan25	EG666311|Zfp498	zinc finger and SCAN domain containing 25	protein-coding	0.095000	0.716418	
mm_105488.1	chr11	106065811	106066011	-	1	NA	NA	NA	-196	NM_027346	70207	Mm.343857	NM_027346	ENSMUSG00000001983	Taco1	2310066I18Rik|Ccdc44	translational activator of mitochondrially encoded cytochrome c oxidase I	protein-coding	0.050000	0.507463	
mm_90567.1	chr10	128231488	128231688	+	1	NA	NA	NA	-475	NM_001164080	21853	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0.035000	0.402985	
mm_35684.1	chr4	43972067	43972267	-	1	NA	NA	NA	-11337	NM_001002787	442829	Mm.348215	NM_001002787	ENSMUSG00000070999	Ccin	4933417A14Rik	calicin	protein-coding	0.010000	0.547264	
mm_84981.1	chr9	85710304	85710504	-	1	NA	NA	NA	38930	NM_001081282	108837	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.020000	0.452736	
mm_99368.1	chr11	101787633	101787833	+	1	NA	NA	NA	-2423	NM_001316365	18612	Mm.5025	NM_008815	ENSMUSG00000017724	Etv4	AW414408|Pea-3|Pea3	ets variant 4	protein-coding	0.000000	0.412935	
mm_17200.1	chr2	25468935	25469135	-	1	NA	NA	NA	714	NM_008963	19215	Mm.1008	NM_008963	ENSMUSG00000015090	Ptgds	21kDa|L-PGDS|PGD2|PGDS|PGDS2|Ptgs3	prostaglandin D2 synthase (brain)	protein-coding	0.035000	0.577114	
mm_112833.1	chr13	20824605	20824805	+	1	NA	NA	NA	30592	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.402985	
mm_144452.1	chr18	23310091	23310291	+	1	NA	NA	NA	171	NM_001285813	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.050000	0.601990	
mm_149577.1	chr19	14598448	14598648	+	1	NA	NA	NA	-365	NM_001302947	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.120000	0.666667	
mm_83071.1	chr9	37613622	37613822	-	1	NA	NA	NA	-1	NM_001324545	20686	Mm.8637	NM_011449	ENSMUSG00000001948	Spa17	Sp17	sperm autoantigenic protein 17	protein-coding	0.095000	0.616915	
mm_24139.1	chr3	88296558	88296758	+	1	NA	NA	NA	180	NM_029801	76927	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	0.060000	0.547264	
mm_141449.1	chr17	30005538	30005738	-	1	NA	NA	NA	551	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.060000	0.686567	
mm_100019.1	chr11	114890282	114890482	+	1	NA	NA	NA	341	NM_170758	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.050000	0.656716	
mm_44853.1	chr5	34232924	34233124	-	1	NA	NA	NA	-45314	NM_010753	17122	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.010000	0.592040	
mm_61265.1	chr7	66109390	66109590	+	1	NA	NA	NA	-25	NM_001081163	269941	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	mKIAA0990	chondroitin sulfate synthase 1	protein-coding	0.145000	0.711443	
mm_29065.1	chr3	103791490	103791690	-	1	NA	NA	NA	-27	NM_001301304	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.050000	0.557214	
mm_83965.1	chr9	57148292	57148492	-	1	NA	NA	NA	-1358	NM_028347	72774	Mm.35749	NM_028347	ENSMUSG00000032298	Neil1	2810450N13Rik|Nei1	nei endonuclease VIII-like 1 (E. coli)	protein-coding	0.055000	0.577114	
mm_129894.1	chr15	83580043	83580243	-	1	NA	NA	NA	15014	NM_183017	223723	Mm.46778	NM_183017	ENSMUSG00000016757	Ttll12	BC055368|D430005B17	tubulin tyrosine ligase-like family, member 12	protein-coding	0.025000	0.567164	
mm_16798.1	chr2	10105076	10105276	-	1	NA	NA	NA	24564	NM_025280	16588	Mm.35498	NM_025280	ENSMUSG00000037262	Kin	Kin17	Kin17 DNA and RNA binding protein	protein-coding	0.010000	0.442786	
mm_123071.1	chr14	55713008	55713208	-	1	NA	NA	NA	-20	NM_019984	21816	Mm.41964	NM_019984	ENSMUSG00000022218	Tgm1	2310004J08Rik|Tgase1	transglutaminase 1, K polypeptide	protein-coding	0.020000	0.512438	
mm_171438.1	chr4	141060375	141060575	-	1	NA	NA	NA	70	NM_001145958	230872	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	0.130000	0.746269	
mm_10187.1	chr2	4882128	4882328	+	1	NA	NA	NA	664	NM_175400	109079	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0.175000	0.776119	
mm_92404.1	chr10	76709458	76709658	-	1	NA	NA	NA	16486	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.035000	0.567164	
mm_164928.1	chr18	80790949	80791149	+	1	NA	NA	NA	-77978	NM_001164109	18018	Mm.329560	NM_016791	ENSMUSG00000033016	Nfatc1	2210017P03Rik|AI449492|AV076380|NF-ATc|NFAT2|NFATc|Nfatcb	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1	protein-coding	0.000000	0.258706	69(TTTTATAAAGTC,+,0.00)
mm_111386.1	chr12	87472200	87472400	-	1	NA	NA	NA	-1	NM_025507	66354	Mm.271174	NM_025507	ENSMUSG00000021039	Snw1	2310008B08Rik|AW048543|NCoA-62|SKIP|Skiip	SNW domain containing 1	protein-coding	0.075000	0.582090	
mm_80377.1	chr9	75408226	75408426	+	1	NA	NA	NA	1033	NM_027418	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.010000	0.338308	-64(CCTCATATAGAA,+,0.00)
mm_95228.1	chr11	44518880	44519080	+	1	NA	NA	NA	16	NM_028862	74315	Mm.156771	NM_028862	ENSMUSG00000019189	Rnf145	3732413I11Rik|TMRF1	ring finger protein 145	protein-coding	0.190000	0.810945	
mm_1035.1	chr1	58756206	58756406	+	1	NA	NA	NA	25754	NM_001293805	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.010000	0.497512	
mm_164419.1	chr16	42955480	42955680	+	1	NA	NA	NA	0	NR_002445	170658	Mm.375824	NR_002445		BC002163	-	NADH dehydrogenase Fe-S protein 5 pseudogene	pseudo	0.035000	0.472637	
mm_107143.1	chr12	21443177	21443377	+	1	NA	NA	NA	-25841	NM_011739	22630	Mm.289630	NM_011739	ENSMUSG00000076432	Ywhaq	2700028P07Rik|AA409740|AU021156|R74690	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	protein-coding	0.010000	0.437811	-10(GACTTTAAAAAC,-,0.00)
mm_12644.1	chr2	74721963	74722163	+	1	NA	NA	NA	85	NM_010469	15436	Mm.482194	NM_010469	ENSMUSG00000101174	Hoxd4	6030436D05Rik|Hox-4.2|Hox-5.1	homeobox D4	protein-coding	0.020000	0.457711	-98(CTATTTATAAGC,-,0.00)
mm_86800.1	chr10	20312377	20312577	+	1	NA	NA	NA	8	NM_001025393	72567	Mm.294783	NM_153787	ENSMUSG00000037608	Bclaf1	2610102K23Rik|2700025J07Rik|2810454G14Rik|5730534O06Rik|AI450190|AW556225|Btf|mKIAA0164	BCL2-associated transcription factor 1	protein-coding	0.100000	0.646766	
mm_21014.1	chr2	152396875	152397075	-	1	NA	NA	NA	1071	NM_011438	20667	Mm.28424	NM_011438	ENSMUSG00000051817	Sox12	2010205A02Rik	SRY (sex determining region Y)-box 12	protein-coding	0.085000	0.716418	
mm_170530.1	chr19	34607868	34608068	+	1	NA	NA	NA	11	NM_001005858	667370	Mm.271850	NM_001005858	ENSMUSG00000062488	Ifit3b	I830012O16Rik	interferon-induced protein with tetratricopeptide repeats 3B	protein-coding	0.005000	0.492537	
mm_34452.1	chr4	148039044	148039244	+	1	NA	NA	NA	67	NM_010840	17769	Mm.89959	NM_010840	ENSMUSG00000029009	Mthfr	AI323986	5,10-methylenetetrahydrofolate reductase	protein-coding	0.085000	0.631841	
mm_61349.1	chr7	68287329	68287529	+	1	NA	NA	NA	-10835	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.015000	0.452736	
mm_56824.1	chr6	117173489	117173689	-	1	NA	NA	NA	5054	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.020000	0.532338	
mm_29625.1	chr3	121532206	121532406	-	1	NA	NA	NA	38	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.085000	0.721393	
mm_34851.1	chr4	155491282	155491482	+	1	NA	NA	NA	21	NM_001160016	14688	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.175000	0.805970	
mm_15033.1	chr2	152754048	152754248	+	1	NA	NA	NA	-25	NM_053091	84682	Mm.196668	NM_053091	ENSMUSG00000009876	Cox4i2	Cox4b|CoxIV-2	cytochrome c oxidase subunit IV isoform 2	protein-coding	0.065000	0.666667	
mm_86678.1	chr10	18251510	18251710	+	1	NA	NA	NA	-16629	NM_144820	215814	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	0.010000	0.472637	
mm_121590.1	chr14	7851450	7851650	-	1	NA	NA	NA	33593	NM_134080	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.005000	0.537313	
mm_121336.1	chr14	115043385	115043585	+	1	NA	NA	NA	-186	NR_029785	723905		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0.000000	0.378109	
mm_80718.1	chr9	92275720	92275920	+	1	NA	NA	NA	218	NM_001195084	18828	Mm.10306	NM_008880	ENSMUSG00000032372	Plscr2	-	phospholipid scramblase 2	protein-coding	0.005000	0.427861	
mm_84081.1	chr9	58202164	58202364	-	1	NA	NA	NA	21	NM_177193	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.045000	0.562189	
mm_77149.1	chr8	111630235	111630435	-	1	NA	NA	NA	-13	NM_027570	52815	Mm.27589	NM_027570	ENSMUSG00000031958	Ldhd	4733401P21Rik|D8Bwg1320e	lactate dehydrogenase D	protein-coding	0.030000	0.616915	
mm_132733.1	chr16	43696964	43697164	+	1	NA	NA	NA	-32880	NM_001146325	100043314	Mm.390896	NM_001146325	ENSMUSG00000071552	Tigit	ENSMUSG00000071552|Vstm3	T cell immunoreceptor with Ig and ITIM domains	protein-coding	0.015000	0.437811	
mm_125796.1	chr15	74835133	74835333	+	1	NA	NA	NA	6410	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.010000	0.482587	
mm_18002.1	chr2	38216926	38217126	-	1	NA	NA	NA	70358	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.000000	0.417910	
mm_136145.1	chr16	87491254	87491454	-	1	NA	NA	NA	4515	NM_009840	12469	Mm.328673	NM_009840	ENSMUSG00000025613	Cct8	AI132397|Cctq|Tcpq	chaperonin containing Tcp1, subunit 8 (theta)	protein-coding	0.010000	0.447761	
mm_25022.1	chr3	98044989	98045189	+	1	NA	NA	NA	31551	NM_010928	18129	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.000000	0.383085	
mm_124369.1	chr14	105897024	105897224	-	1	NA	NA	NA	-305	NM_011897	24064	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty homolog 2 (Drosophila)	protein-coding	0.160000	0.830846	
mm_5338.1	chr1	24099652	24099852	-	1	NA	NA	NA	589	NM_026604	68187	Mm.87130	NM_026604	ENSMUSG00000026153	Fam135a	4921533L14Rik|AI256732|AI835491	family with sequence similarity 135, member A	protein-coding	0.145000	0.711443	
mm_119493.1	chr14	47378268	47378468	+	1	NA	NA	NA	4508	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.025000	0.522388	
mm_108176.1	chr12	76406353	76406553	+	1	NA	NA	NA	2083	NM_008301	15512	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0.040000	0.462687	
mm_80232.1	chr9	72671160	72671360	+	1	NA	NA	NA	8913	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.010000	0.383085	
mm_171152.1	chr3	16077606	16077806	+	1	NA	NA	NA	-71374	NM_001081687	381484	Mm.217376	NM_001081687	ENSMUSG00000078780	Gm5150	-	predicted gene 5150	protein-coding	0.025000	0.467662	
mm_13149.1	chr2	92375410	92375610	+	1	NA	NA	NA	271	NM_145122	18633	Mm.202782	NM_145122	ENSMUSG00000027222	Pex16	-	peroxisomal biogenesis factor 16	protein-coding	0.065000	0.666667	
mm_75345.1	chr8	43306954	43307154	-	1	NA	NA	NA	-45	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.040000	0.606965	
mm_146904.1	chr18	31316821	31317021	-	1	NA	NA	NA	207	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding	0.050000	0.542289	
mm_154057.1	chr19	55116908	55117108	-	1	NA	NA	NA	-17561	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.000000	0.437811	
mm_162758.1	chr10	61383376	61383576	-	1	NA	NA	NA	47	NM_013753	27355	Mm.269699	NM_013753	ENSMUSG00000020092	Pald1	MMPAL|Pald|mKIAA1274	phosphatase domain containing, paladin 1	protein-coding	0.080000	0.751244	
mm_90164.1	chr10	119255273	119255473	+	1	NA	NA	NA	-15318	NM_027994	71902	Mm.203965	NM_027994	ENSMUSG00000020114	Cand1	2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829	cullin associated and neddylation disassociated 1	protein-coding	0.045000	0.472637	-33(CTGCATAAAAAG,-,0.00)
mm_124531.1	chr14	122439150	122439350	-	1	NA	NA	NA	11865	NR_033325	328479	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.000000	0.348259	
mm_44655.1	chr5	28210302	28210502	-	1	NA	NA	NA	-234	NM_001310511	269637	Mm.68286	NM_175651	ENSMUSG00000044681	Cnpy1	1500012D20Rik|9630008K15Rik|AI853839	canopy FGF signaling regulator 1	protein-coding	0.075000	0.577114	
mm_57535.1	chr6	126639961	126640161	-	1	NA	NA	NA	5740	NM_010595	16485	Mm.40424	NM_010595	ENSMUSG00000047976	Kcna1	AI840627|Kca1-1|Kv1.1|MBK1|Mk-1|Shak|mceph	potassium voltage-gated channel, shaker-related subfamily, member 1	protein-coding	0.010000	0.477612	
mm_150625.1	chr19	41329017	41329217	+	1	NA	NA	NA	55953	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.015000	0.512438	-29(AGCTTTTAAAAC,-,0.00),-28(GCTTTTAAAACA,+,0.00),-27(CTTTTAAAACAC,+,0.00)
mm_147728.1	chr18	61014012	61014212	-	1	NA	NA	NA	87	NM_201353	240332	Mm.39846	NM_201353	ENSMUSG00000052026	Slc6a7	AW455934|PROT	solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	protein-coding	0.115000	0.741294	
mm_18352.1	chr2	58160695	58160895	-	1	NA	NA	NA	-673	NM_139200	227929	Mm.273905	NM_139200	ENSMUSG00000026832	Cytip	A130053M09Rik|AI462064|C80816|Cbp|Cybr|Pscdbp	cytohesin 1 interacting protein	protein-coding	0.020000	0.487562	
mm_112931.1	chr13	20963997	20964197	+	1	NA	NA	NA	109202	NM_146535	258528	Mm.377554	NM_146535	ENSMUSG00000042869	Olfr1370	MOR256-14	olfactory receptor 1370	protein-coding	0.000000	0.328358	
mm_9949.1	chr1	190979069	190979269	-	1	NA	NA	NA	127	NR_027352	226841	Mm.22856	NM_144879	ENSMUSG00000037568	Vash2	B130052G07Rik	vasohibin 2	protein-coding	0.115000	0.666667	
mm_165158.1	chr2	23247184	23247384	+	1	NA	NA	NA	39808	NM_027635	70981	Mm.314026	NM_027635	ENSMUSG00000026774	4931423N10Rik	-	RIKEN cDNA 4931423N10 gene	protein-coding	0.000000	0.502488	
mm_130765.1	chr15	101370063	101370263	-	1	NA	NA	NA	-38	NM_028770	74127	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0.030000	0.611940	
mm_20873.1	chr2	148696902	148697102	-	1	NA	NA	NA	15882	NM_028986	74533	Mm.136913	NM_028986	ENSMUSG00000027439	Gzf1	8430437G08Rik|Zfp336|mGZF1	GDNF-inducible zinc finger protein 1	protein-coding	0.000000	0.368159	44(TCCTTTATAGCT,+,0.00)
mm_71202.1	chr8	40887813	40888013	+	1	NA	NA	NA	25546	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.015000	0.477612	
mm_33135.1	chr4	125029978	125030178	+	1	NA	NA	NA	64	NM_145552	230737	Mm.90760	NM_145552	ENSMUSG00000028869	Gnl2	BC003262|HUMAUANTIG|Ngp-1	guanine nucleotide binding protein-like 2 (nucleolar)	protein-coding	0.125000	0.616915	
mm_149810.1	chr19	23857088	23857288	+	1	NA	NA	NA	98312	NM_177034	319924	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.005000	0.313433	
mm_92063.1	chr10	62514279	62514479	-	1	NA	NA	NA	-6624	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.020000	0.512438	
mm_27331.1	chr3	50381365	50381565	-	1	NA	NA	NA	62148	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.328358	
mm_42764.1	chr5	121220117	121220317	+	1	NA	NA	NA	-2	NM_181421	269700	Mm.184589	NM_181421	ENSMUSG00000042744	Gm15800	A130010L24|AU042671|BC019639|EG545802|OTTMUSG00000026283|mKIAA0614	predicted gene 15800	protein-coding	0.110000	0.726368	
mm_1811.1	chr1	81166789	81166989	+	1	NA	NA	NA	89572	NM_172849	241134	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	0.010000	0.368159	
mm_124594.1	chr15	3274796	3274996	+	1	NA	NA	NA	3919	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.005000	0.353234	-11(TCTTTTAAGGCT,+,0.00),41(GCATATAAAAGG,-,0.00)
mm_144300.1	chr18	12333850	12334050	+	1	NA	NA	NA	-74	NM_010680	16774	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0.100000	0.746269	
mm_82377.1	chr9	14615382	14615582	-	1	NA	NA	NA	-482	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.020000	0.492537	
mm_44341.1	chr5	17776687	17776887	-	1	NA	NA	NA	59109	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.025000	0.557214	
mm_161679.1	chr17	15502934	15503134	+	1	NA	NA	NA	3146	NM_013684	21374	Mm.244820	NM_013684	ENSMUSG00000014767	Tbp	GTF2D1|Gtf2d|SCA17|TFIID	TATA box binding protein	protein-coding	0.005000	0.417910	
mm_146420.1	chr18	84720057	84720257	+	1	NA	NA	NA	-85	NM_173770	240479	Mm.472378	NM_173770	ENSMUSG00000047992	Fam69c	B230399E16Rik	family with sequence similarity 69, member C	protein-coding	0.150000	0.791045	
mm_92860.1	chr10	81565684	81565884	-	1	NA	NA	NA	6340	NM_001276288	14797	Mm.180013	NM_010347	ENSMUSG00000054452	Aes	AL024115|Esp1|Grg|Grg-5|Grg5|Tle5	amino-terminal enhancer of split	protein-coding	0.015000	0.611940	
mm_8804.1	chr1	161867013	161867213	-	1	NA	NA	NA	9548	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.000000	0.393035	
mm_32287.1	chr4	102991820	102992020	+	1	NA	NA	NA	125	NM_001163768	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.015000	0.487562	
mm_152112.1	chr19	6969638	6969838	-	1	NA	NA	NA	76	NM_008874	18797	Mm.273204	NM_008874	ENSMUSG00000024960	Plcb3	mKIAA4098	phospholipase C, beta 3	protein-coding	0.150000	0.796020	
mm_91327.1	chr10	25220753	25220953	-	1	NA	NA	NA	-20683	NM_001347460	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.005000	0.402985	
mm_152039.1	chr19	6121775	6121975	-	1	NA	NA	NA	-3289	NM_133678	66406	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.035000	0.646766	
mm_8960.1	chr1	164935425	164935625	-	1	NA	NA	NA	-15	NM_008510	16963	Mm.190	NM_008510	ENSMUSG00000026573	Xcl1	AI661682|ATAC|LTN|Lptn|SCM-1|SCM-1a|Scyc1	chemokine (C motif) ligand 1	protein-coding	0.015000	0.562189	
mm_119535.1	chr14	47674701	47674901	+	1	NA	NA	NA	11045	NM_001347522	16709	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	0.025000	0.472637	
mm_117211.1	chr13	64089103	64089303	-	1	NA	NA	NA	-2	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.010000	0.537313	
mm_117373.1	chr13	71963621	71963821	-	1	NA	NA	NA	2	NM_010573	16371	Mm.316056	NM_010573	ENSMUSG00000060969	Irx1	-	Iroquois related homeobox 1 (Drosophila)	protein-coding	0.120000	0.726368	
mm_57874.1	chr6	130065151	130065351	-	1	NA	NA	NA	2007	NM_053153	93970	Mm.333431	NM_053153		Klra18	Ly49r	killer cell lectin-like receptor, subfamily A, member 18	protein-coding	0.015000	0.407960	
mm_65212.1	chr7	19697928	19698128	-	1	NA	NA	NA	370	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.005000	0.452736	13(AACTATAAGAGG,-,0.00)
mm_159382.1	chr3	90248920	90249120	+	1	NA	NA	NA	828	NM_013901	30791	Mm.294709	NM_013901	ENSMUSG00000052310	Slc39a1	Zip1|Zirtl	solute carrier family 39 (zinc transporter), member 1	protein-coding	0.025000	0.616915	
mm_15272.1	chr2	155217718	155217918	+	1	NA	NA	NA	-18715	NR_111891	67068	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	0.015000	0.497512	
mm_24208.1	chr3	88621399	88621599	+	1	NA	NA	NA	105	NM_001198912	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.120000	0.706468	
mm_18253.1	chr2	52235498	52235698	-	1	NA	NA	NA	-55404	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.025000	0.502488	
mm_153077.1	chr19	32323117	32323317	-	1	NA	NA	NA	26099	NM_001168525	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.030000	0.492537	
mm_73470.1	chr8	106682973	106683173	+	1	NA	NA	NA	5	NM_173037	272538	Mm.87151	NM_173037	ENSMUSG00000041949	Tango6	AW413431|E330010G16|Tmco7	transport and golgi organization 6	protein-coding	0.080000	0.616915	
mm_157357.1	chrX	37085105	37085305	-	1	NA	NA	NA	17	NM_026055	67248	Mm.30478	NM_026055	ENSMUSG00000079641	Rpl39	2810465O16Rik	ribosomal protein L39	protein-coding	0.090000	0.611940	
mm_150109.1	chr19	29537066	29537266	+	1	NA	NA	NA	14884	NM_001081319	226089	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0.025000	0.378109	
mm_159379.1	chr3	90021217	90021417	-	1	NA	NA	NA	-10107	NR_106129	102465771		NR_106129	ENSMUSG00000098397	Mir7669	Gm27996|mmu-mir-7669	microRNA 7669	ncRNA	0.030000	0.557214	
mm_37708.1	chr4	129446869	129447069	-	1	NA	NA	NA	-6151	NM_153541	215627	Mm.428660	NM_153541	ENSMUSG00000048485	Zbtb8b	AV220464|BC023839|BOZF1|Zbtb8	zinc finger and BTB domain containing 8b	protein-coding	0.020000	0.447761	-34(CCCCATAAAAAC,-,0.00),-32(CCATAAAAACCC,+,0.00)
mm_51542.1	chr6	83205999	83206199	+	1	NA	NA	NA	20153	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.010000	0.532338	-66(CCTTTTCAGGAG,+,0.00)
mm_34526.1	chr4	149166726	149166926	+	1	NA	NA	NA	-119	NM_001081274	110208	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.070000	0.597015	34(GCGTTTAAAGGG,-,0.00),67(GCGTTTAAAGGG,-,0.00)
mm_111095.1	chr12	80597032	80597232	-	1	NA	NA	NA	46979	NM_007951	13877	Mm.246551	NM_007951	ENSMUSG00000021131	Erh	Mer|Prei1	enhancer of rudimentary homolog (Drosophila)	protein-coding	0.005000	0.532338	
mm_169916.1	chr16	57391057	57391257	-	1	NA	NA	NA	37880	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.060000	0.512438	-65(AACTTTAAATGG,-,0.00)
mm_29557.1	chr3	116807873	116808073	-	1	NA	NA	NA	193	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.105000	0.611940	
mm_58496.1	chr7	3704221	3704421	+	1	NA	NA	NA	280	NM_029767	76846	Mm.13944	NM_029767	ENSMUSG00000006333	Rps9	3010033P07Rik|AL022771|AL022885	ribosomal protein S9	protein-coding	0.085000	0.562189	
mm_15325.1	chr2	155751230	155751430	+	1	NA	NA	NA	113	NM_011171	19124	Mm.3243	NM_011171	ENSMUSG00000027611	Procr	AI325044|Ccca|Ccd41|Epcr	protein C receptor, endothelial	protein-coding	0.045000	0.582090	-86(CACTTTAAAAGC,-,0.00),-85(ACTTTAAAAGCC,+,0.00)
mm_128805.1	chr15	66948323	66948523	-	1	NA	NA	NA	21218	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.030000	0.577114	
mm_142561.1	chr17	46645044	46645244	-	1	NA	NA	NA	0	NM_029091	74764	Mm.279599	NM_029091	ENSMUSG00000003546	Klc4	1200014P03Rik|AA408085|AW146303|Knsl8	kinesin light chain 4	protein-coding	0.015000	0.542289	
mm_138704.1	chr17	36023735	36023935	+	1	NA	NA	NA	-3275	NM_008207	15042	Mm.439654	NM_008207	ENSMUSG00000053835	H2-T24	H-2T24	histocompatibility 2, T region locus 24	protein-coding	0.005000	0.522388	
mm_167220.1	chr8	11423463	11423663	+	1	NA	NA	NA	-54366	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.020000	0.487562	
mm_100090.1	chr11	115564364	115564564	+	1	NA	NA	NA	20	NM_001002929	445007	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	0.090000	0.676617	
mm_102718.1	chr11	67114818	67115018	-	1	NA	NA	NA	5162	NR_038055	74184	Mm.162554	NR_038055	ENSMUSG00000087410	2310065F04Rik	linc-Myh	RIKEN cDNA 2310065F04 gene	ncRNA	0.025000	0.492537	
mm_150531.1	chr19	39290739	39290939	+	1	NA	NA	NA	3754	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.005000	0.422886	
mm_85237.1	chr9	98601560	98601760	-	1	NA	NA	NA	19	NM_025485	64655	Mm.17949	NM_025485	ENSMUSG00000032459	Mrps22	3100002P07Rik|Rpms22	mitochondrial ribosomal protein S22	protein-coding	0.085000	0.582090	
mm_53614.1	chr6	140041425	140041625	+	1	NA	NA	NA	0	NM_007605	12344	Mm.12817	NM_007605	ENSMUSG00000041791	Capza3	510-4|Cappa3|Gsg3|Tex8|repro32	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding	0.015000	0.447761	
mm_135306.1	chr16	38712751	38712951	-	1	NA	NA	NA	184	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.145000	0.781095	
mm_150257.1	chr19	34192606	34192806	+	1	NA	NA	NA	436	NM_029682	76630	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.080000	0.671642	
mm_43337.1	chr5	135041045	135041245	+	1	NA	NA	NA	17663	NR_133683	20907	Mm.6225	NM_016801	ENSMUSG00000007207	Stx1a	HPC-1	syntaxin 1A (brain)	protein-coding	0.010000	0.587065	84(CCTCATAGAGAC,+,0.00)
mm_47831.1	chr5	134276896	134277096	-	1	NA	NA	NA	37764	NM_001080746	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.015000	0.393035	
mm_154918.1	chrX	22461536	22461736	+	1	NA	NA	NA	40	NR_033731	76705	Mm.399727	NM_029707		Ppp1r2-ps7	1700023I07Rik	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 7	pseudo	0.025000	0.587065	
mm_75953.1	chr8	71690473	71690673	-	1	NA	NA	NA	1321	NM_013564	16336	Mm.476857	NM_013564	ENSMUSG00000079019	Insl3	Rlf|Rlnl	insulin-like 3	protein-coding	0.005000	0.547264	
mm_88512.1	chr10	78018929	78019129	+	1	NA	NA	NA	-9233	NM_008826	18641	Mm.269649	NM_008826	ENSMUSG00000020277	Pfkl	AA407869|ATP-PFK|PFK-L	phosphofructokinase, liver, B-type	protein-coding	0.060000	0.577114	
mm_120390.1	chr14	64590367	64590567	+	1	NA	NA	NA	-190	NR_029813	387233		NR_029813	ENSMUSG00000065597	Mir124a-1	Mirn124a|Mirn124a-1	microRNA 124a-1	ncRNA	0.045000	0.547264	
mm_21703.1	chr2	164573207	164573407	-	1	NA	NA	NA	149	NM_001177401	629747	Mm.234248	NM_001177401	ENSMUSG00000074596	Spint3	Gm14315|OTTMUSG00000016288	serine peptidase inhibitor, Kunitz type, 3	protein-coding	0.005000	0.522388	
mm_94388.1	chr11	5525098	5525298	+	1	NA	NA	NA	4557	NM_001271730	22433	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0.005000	0.512438	
mm_78003.1	chr9	10080406	10080606	+	1	NA	NA	NA	186075	NR_105745	102466147		NR_105745	ENSMUSG00000098408	Mir6237	Gm27411|mmu-mir-6237	microRNA 6237	ncRNA	0.015000	0.547264	
mm_84596.1	chr9	70037906	70038106	-	1	NA	NA	NA	82	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.000000	0.437811	-31(CTCTTTATAAGG,-,0.00),-29(CTTTATAAGGGA,+,0.00)
mm_41956.1	chr5	105843664	105843864	+	1	NA	NA	NA	-32804	NR_030777	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.010000	0.477612	
mm_130950.1	chr15	103255169	103255369	-	1	NA	NA	NA	170	NM_008685	18022	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.085000	0.701493	
mm_38043.1	chr4	133967160	133967360	-	1	NA	NA	NA	731	NM_016957	15331	Mm.319660	NM_016957	ENSMUSG00000003038	Hmgn2	HMG-17|Hmg17	high mobility group nucleosomal binding domain 2	protein-coding	0.110000	0.716418	
mm_100153.1	chr11	116110238	116110438	+	1	NA	NA	NA	-103	NM_172570	217333	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.105000	0.771144	
mm_120637.1	chr14	70467740	70467940	+	1	NA	NA	NA	10323	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.020000	0.592040	
mm_77122.1	chr8	111300134	111300334	-	1	NA	NA	NA	-12	NM_146218	234736	Mm.334816	NM_146218	ENSMUSG00000033596	Rfwd3	BC027246	ring finger and WD repeat domain 3	protein-coding	0.125000	0.696517	
mm_113270.1	chr13	29014309	29014509	+	1	NA	NA	NA	-5	NR_045077	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0.025000	0.467662	
mm_94848.1	chr11	23770183	23770383	+	1	NA	NA	NA	687	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.055000	0.462687	
mm_10492.1	chr2	14824031	14824231	+	1	NA	NA	NA	39	NM_001252533	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.030000	0.482587	
mm_156974.1	chrX	6171730	6171930	-	1	NA	NA	NA	1161	NM_001031664	102954	Mm.426101	NM_001031664	ENSMUSG00000073293	Nudt10	AI853080|Dipp3a	nudix (nucleoside diphosphate linked moiety X)-type motif 10	protein-coding	0.035000	0.437811	-97(CCCCCTATAAAC,-,0.00),-95(CCCTATAAACAG,+,0.00),10(GCCTTTAGAGTC,+,0.00)
mm_112856.1	chr13	20840864	20841064	+	1	NA	NA	NA	46851	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.348259	-35(TTTTTAATAGTC,+,0.00)
mm_162200.1	chrX	134161950	134162150	-	1	NA	NA	NA	-122	NM_183319	331524	Mm.235055	NM_183319	ENSMUSG00000031258	Xkrx	A630026F04	X-linked Kx blood group related, X-linked	protein-coding	0.015000	0.502488	
mm_127499.1	chr15	101419518	101419718	+	1	NA	NA	NA	7215	NM_033073	110310	Mm.486285	NM_033073	ENSMUSG00000023039	Krt7	D15Wsu77e|K7|Krt2-7	keratin 7	protein-coding	0.020000	0.562189	
mm_12126.1	chr2	61643656	61643856	+	1	NA	NA	NA	50659	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.025000	0.393035	
mm_123224.1	chr14	59597838	59598038	-	1	NA	NA	NA	21	NM_001168537	71891	Mm.439850	NM_027986	ENSMUSG00000021982	Cdadc1	2310010M10Rik|AI449174|AI463398|BB130816|NYD-SP15	cytidine and dCMP deaminase domain containing 1	protein-coding	0.080000	0.631841	
mm_143469.1	chr17	71022871	71023071	-	1	NA	NA	NA	3414	NM_001083934	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.040000	0.572139	
mm_151563.1	chr19	60611206	60611406	+	1	NA	NA	NA	-30283	NM_001172096	78832	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	0.010000	0.512438	
mm_115349.1	chr13	112673299	112673499	+	1	NA	NA	NA	12633	NM_178746	268706	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0.015000	0.343284	
mm_25020.1	chr3	98013526	98013726	+	1	NA	NA	NA	88	NM_010928	18129	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.120000	0.731343	
mm_103860.1	chr11	83298789	83298989	-	1	NA	NA	NA	88	NM_134025	103737	Mm.102205	NM_134025	ENSMUSG00000018733	Pex12	AI451906	peroxisomal biogenesis factor 12	protein-coding	0.105000	0.661692	
mm_34816.1	chr4	154942871	154943071	+	1	NA	NA	NA	-14894	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.025000	0.482587	
mm_5921.1	chr1	55130946	55131146	-	1	NA	NA	NA	-199	NM_001310585	19070	Mm.291037	NM_025283	ENSMUSG00000025979	Mob4	2610109B12Rik|Mobkl3|Phocn|Prei3	MOB family member 4, phocein	protein-coding	0.070000	0.621891	
mm_3935.1	chr1	163762087	163762287	+	1	NA	NA	NA	-17396	NM_001305643	16579	Mm.4651	NM_010629	ENSMUSG00000026585	Kifap3	KAP-3|KAP3|SMAP	kinesin-associated protein 3	protein-coding	0.010000	0.383085	
mm_143245.1	chr17	64309214	64309414	-	1	NA	NA	NA	22569	NM_144859	224938	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja 2, RING-H2 motif containing	protein-coding	0.025000	0.502488	
mm_144999.1	chr18	38338986	38339186	+	1	NA	NA	NA	-93	NM_011937	26384	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.075000	0.686567	
mm_107829.1	chr12	69197127	69197327	+	1	NA	NA	NA	16	NR_033222	414085	Mm.256223	NR_033222	ENSMUSG00000097061	9330151L19Rik	-	RIKEN cDNA 9330151L19 gene	ncRNA	0.160000	0.726368	
mm_114764.1	chr13	87667253	87667453	+	1	NA	NA	NA	-1154119	NM_010103	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.010000	0.388060	
mm_113142.1	chr13	24676731	24676931	+	1	NA	NA	NA	38183	NM_029679	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.010000	0.507463	
mm_58124.1	chr6	140101042	140101242	-	1	NA	NA	NA	59617	NM_007605	12344	Mm.12817	NM_007605	ENSMUSG00000041791	Capza3	510-4|Cappa3|Gsg3|Tex8|repro32	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding	0.005000	0.437811	
mm_716.1	chr1	42694865	42695065	+	1	NA	NA	NA	-140	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.095000	0.661692	
mm_119511.1	chr14	47384622	47384822	+	1	NA	NA	NA	10862	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.020000	0.482587	
mm_111517.1	chr12	99883315	99883515	-	1	NA	NA	NA	27	NM_030172	78767	Mm.235920	NM_030172	ENSMUSG00000021176	Efcab11	2610021K21Rik|2610110A13Rik	EF-hand calcium binding domain 11	protein-coding	0.090000	0.641791	
mm_57446.1	chr6	124997303	124997503	-	1	NA	NA	NA	683	NM_175696	319352	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.050000	0.666667	
mm_62427.1	chr7	101347995	101348195	+	1	NA	NA	NA	26	NM_001040111	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.140000	0.736318	
mm_98231.1	chr11	88068282	88068482	+	1	NA	NA	NA	103	NM_016686	22344	Mm.46628	NM_016686	ENSMUSG00000018377	Vezf1	AI848691|AW046909|db1	vascular endothelial zinc finger 1	protein-coding	0.110000	0.786070	
mm_100989.1	chr11	7214074	7214274	-	1	NA	NA	NA	-251	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding	0.050000	0.631841	
mm_143249.1	chr17	64602033	64602233	-	1	NA	NA	NA	484	NM_008549	17158	Mm.2433	NM_008549	ENSMUSG00000024085	Man2a1	Mana-2|Mana2|Map-2	mannosidase 2, alpha 1	protein-coding	0.050000	0.606965	
mm_112523.1	chr13	9242623	9242823	+	1	NA	NA	NA	-33802	NM_001081426	208440	Mm.217326	NM_172459	ENSMUSG00000048264	Dip2c	2900024P20Rik|9630044M06|mKIAA0934	disco interacting protein 2 homolog C	protein-coding	0.010000	0.427861	
mm_73273.1	chr8	104591385	104591585	+	1	NA	NA	NA	17	NM_001024606	382051	Mm.290750	NM_001024606	ENSMUSG00000048371	Pdp2	4833426J09Rik|Gm1705|mKIAA1348	pyruvate dehyrogenase phosphatase catalytic subunit 2	protein-coding	0.065000	0.616915	
mm_119044.1	chr14	30596550	30596750	+	1	NA	NA	NA	13660	NM_001310682	18753	Mm.2314	NM_011103	ENSMUSG00000021948	Prkcd	AI385711|D14Ertd420e|PKC[d]|PKCdelta|Pkcd	protein kinase C, delta	protein-coding	0.005000	0.402985	66(ATGTTTATAAGG,-,0.00)
mm_116207.1	chr13	32776341	32776541	-	1	NA	NA	NA	5338	NM_001166030	238564	Mm.60041	NM_001166030	ENSMUSG00000044951	Mylk4	EG238564	myosin light chain kinase family, member 4	protein-coding	0.025000	0.497512	-65(TCCTTTTAAAGA,-,0.00),-64(CCTTTTAAAGAA,+,0.00)
mm_109730.1	chr12	116442863	116443063	+	1	NA	NA	NA	37561	NM_133762	76044	Mm.491196	NM_133762	ENSMUSG00000042029	Ncapg2	5830426I05Rik|Luzp5|Mtb|mCAP-G2	non-SMC condensin II complex, subunit G2	protein-coding	0.000000	0.328358	
mm_7361.1	chr1	106711504	106711704	-	1	NA	NA	NA	2686	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.020000	0.462687	
mm_15139.1	chr2	153974675	153974875	+	1	NA	NA	NA	-170	NM_001080811	545477	Mm.379973	NM_001080811	ENSMUSG00000078998	Bpifa6	EG545477|Gm5840|Splunc6	BPI fold containing family A, member 6	protein-coding	0.010000	0.527363	
mm_21808.1	chr2	165034740	165034940	-	1	NA	NA	NA	-61	NM_144892	228869	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	0.120000	0.716418	
mm_53716.1	chr6	143402025	143402225	+	1	NA	NA	NA	156237	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.025000	0.477612	-36(CCTTAAAAACTG,+,0.00)
mm_92266.1	chr10	71156342	71156542	-	1	NA	NA	NA	3248	NM_031397	83675	Mm.286834	NM_031397	ENSMUSG00000014329	Bicc1	Bic-C|bpk|jcpk	BicC family RNA binding protein 1	protein-coding	0.005000	0.363184	
mm_14983.1	chr2	152175006	152175206	+	1	NA	NA	NA	31497	NM_009328	21407	Mm.3881	NM_009328	ENSMUSG00000068079	Tcf15	Meso1|bHLH-EC2	transcription factor 15	protein-coding	0.010000	0.542289	-88(GCCTCTTAAAGG,-,0.00),-87(CCTCTTAAAGGC,+,0.00),-86(CTCTTAAAGGCC,+,0.00)
mm_62821.1	chr7	113392289	113392489	+	1	NA	NA	NA	-3816	NM_020623	19226	Mm.284168	NM_020623	ENSMUSG00000059077	Pth	Pthp	parathyroid hormone	protein-coding	0.015000	0.328358	13(AGCTTTAAAAGA,-,0.00),14(GCTTTAAAAGAA,+,0.00)
mm_80490.1	chr9	78395774	78395974	+	1	NA	NA	NA	97	NM_001191044	100048658	Mm.158166	NM_001191044	ENSMUSG00000070291	Ddx43	ENSMUSG00000070291|OTTMUSG00000019690	DEAD (Asp-Glu-Ala-Asp) box polypeptide 43	protein-coding	0.150000	0.716418	
mm_147771.1	chr18	61400367	61400567	-	1	NA	NA	NA	-36	NM_133249	170826	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0.145000	0.815920	
mm_44571.1	chr5	24757750	24757950	-	1	NA	NA	NA	-7	NM_153076	214301	Mm.63484	NM_153076	ENSMUSG00000038135	Crygn	-	crystallin, gamma N	protein-coding	0.070000	0.651741	
mm_111297.1	chr12	85485699	85485899	-	1	NA	NA	NA	11898	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.050000	0.601990	-22(GCTTTTCTACCC,+,0.00)
mm_39394.1	chr5	14025216	14025416	+	1	NA	NA	NA	40	NM_011348	20349	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	0.090000	0.686567	
mm_68343.1	chr7	106506390	106506590	-	1	NA	NA	NA	-65417	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.010000	0.383085	
mm_147735.1	chr18	61039845	61040045	-	1	NA	NA	NA	-3746	NM_009880	12590	Mm.144448	NM_009880	ENSMUSG00000024619	Cdx1	Cdx|Cdx-1	caudal type homeobox 1	protein-coding	0.030000	0.557214	
mm_132109.1	chr16	31455011	31455211	+	1	NA	NA	NA	26358	NM_001122683	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.025000	0.542289	
mm_97928.1	chr11	83648035	83648235	+	1	NA	NA	NA	1243	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.015000	0.417910	
mm_91047.1	chr10	18678990	18679190	-	1	NA	NA	NA	64668	NM_001033258	215821	Mm.40491	NM_001033258	ENSMUSG00000019852	Arfgef3	9630004D11|B930094H20Rik|BIG3|D10Bwg1379e|mKIAA1244	ARFGEF family member 3	protein-coding	0.015000	0.412935	
mm_149134.1	chr19	9002620	9002820	+	1	NA	NA	NA	13436	NM_001286518	66395	Mm.203866	NM_009643	ENSMUSG00000069833	Ahnak	DY6	AHNAK nucleoprotein (desmoyokin)	protein-coding	0.005000	0.532338	
mm_30229.1	chr3	145651347	145651547	-	1	NA	NA	NA	-1462	NM_010516	16007	Mm.1231	NM_010516	ENSMUSG00000028195	Cyr61	AI325051|CCN1|Igfbp10	cysteine rich protein 61	protein-coding	0.030000	0.462687	
mm_118938.1	chr14	27237911	27238111	+	1	NA	NA	NA	1	NM_027871	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.015000	0.577114	
mm_92389.1	chr10	76596294	76596494	-	1	NA	NA	NA	20746	NM_080845	14317	Mm.36278	NM_080845	ENSMUSG00000001155	Ftcd	-	formiminotransferase cyclodeaminase	protein-coding	0.085000	0.636816	
mm_16301.1	chr2	174289463	174289663	+	1	NA	NA	NA	5243	NM_022000	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.010000	0.442786	-23(CTTTTTATATGC,+,0.00)
mm_105013.1	chr11	100414694	100414894	-	1	NA	NA	NA	25	NM_176830	66180	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	0.060000	0.676617	
mm_129209.1	chr15	76521931	76522131	-	1	NA	NA	NA	98	NM_130893	170729	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.055000	0.686567	
mm_170541.1	chr19	3986410	3986610	+	1	NA	NA	NA	-60	NM_001302479	71670	Mm.29735	NM_027857	ENSMUSG00000024866	Acy3	0610006H10Rik|AA3|AAIII|AW107362|Acy-3|HCBP1	aspartoacylase (aminoacylase) 3	protein-coding	0.030000	0.626866	27(GCCTATAAATAC,-,0.00)
mm_30990.1	chr4	35226773	35226973	+	1	NA	NA	NA	-993	NM_001081343	73205	Mm.331544	NM_001081343	ENSMUSG00000028300	3110043O21Rik	AI840585	RIKEN cDNA 3110043O21 gene	protein-coding	0.010000	0.283582	
mm_93149.1	chr10	92937913	92938113	-	1	NA	NA	NA	143583	NM_001347060	380654	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	0.035000	0.517413	84(GCTTTTAAATGC,+,0.00),84(GCTTTTAAATGC,-,0.00)
mm_170972.1	chr2	64312490	64312690	+	1	NA	NA	NA	-214552	NM_001267847	60344	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.030000	0.502488	-46(TGGTTTTAAAAG,-,0.00),-44(GTTTTAAAAGTG,+,0.00)
mm_158964.1	chr1	92934356	92934556	+	1	NA	NA	NA	48	NM_011796	23830	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	0.060000	0.532338	
mm_129006.1	chr15	74879288	74879488	-	1	NA	NA	NA	2316	NM_025929	67038	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.000000	0.552239	
mm_89079.1	chr10	83344070	83344270	+	1	NA	NA	NA	-6353	NM_177388	338365	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.000000	0.567164	
mm_151562.1	chr19	60598431	60598631	+	1	NA	NA	NA	-17508	NM_001172096	78832	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	0.020000	0.457711	-35(GAGTATAAATAG,-,0.00)
mm_22038.1	chr2	168206782	168206982	-	1	NA	NA	NA	230	NM_009628	11538	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0.155000	0.796020	
mm_73715.1	chr8	111940603	111940803	+	1	NA	NA	NA	0	NM_026693	93739	Mm.371666	NM_026693	ENSMUSG00000031950	Gabarapl2	0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2	gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2	protein-coding	0.125000	0.681592	
mm_29108.1	chr3	104837188	104837388	-	1	NA	NA	NA	-18725	NM_001163440	17454	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Moloney leukemia virus 10	protein-coding	0.005000	0.323383	
mm_51833.1	chr6	89643970	89644170	+	1	NA	NA	NA	82	NM_001178058	232223	Mm.229332	NM_153162	ENSMUSG00000000811	Txnrd3	AI196535|TR2|Tgr	thioredoxin reductase 3	protein-coding	0.150000	0.751244	
mm_16512.1	chr2	181365395	181365595	+	1	NA	NA	NA	72	NM_001048148	229007	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	0.120000	0.741294	
mm_156979.1	chrX	7188593	7188793	-	1	NA	NA	NA	21	NM_016691	12728	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	0.035000	0.507463	
mm_57122.1	chr6	122596927	122597127	-	1	NA	NA	NA	5417	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.005000	0.368159	
mm_80418.1	chr9	77838773	77838973	+	1	NA	NA	NA	-78492	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.010000	0.557214	
mm_119781.1	chr14	54181398	54181598	+	1	NA	NA	NA	72431	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.432836	
mm_120515.1	chr14	66636786	66636986	+	1	NA	NA	NA	1635	NM_001271760	11549	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	0.040000	0.597015	
mm_132280.1	chr16	33056405	33056605	+	1	NA	NA	NA	-9	NM_021338	57808	Mm.19355	NM_021338	ENSMUSG00000060636	Rpl35a	2810431L15Rik|Rpl35	ribosomal protein L35A	protein-coding	0.090000	0.671642	
mm_109431.1	chr12	110628147	110628347	+	1	NA	NA	NA	26852	NM_030238	13424	Mm.181430	NM_030238	ENSMUSG00000018707	Dync1h1	9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325	dynein cytoplasmic 1 heavy chain 1	protein-coding	0.025000	0.507463	
mm_146218.1	chr18	77038314	77038514	+	1	NA	NA	NA	8882	NM_027721	71206	Mm.35803	NM_027721	ENSMUSG00000025420	Katnal2	3110023G01Rik|4933439B08Rik	katanin p60 subunit A-like 2	protein-coding	0.015000	0.467662	
mm_98777.1	chr11	96789119	96789319	+	1	NA	NA	NA	83	NM_007622	12412	Mm.29055	NM_007622	ENSMUSG00000018666	Cbx1	Cbx|Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1	chromobox 1	protein-coding	0.145000	0.711443	
mm_17227.1	chr2	25546868	25547068	-	1	NA	NA	NA	-28	NM_009422	22030	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	0.125000	0.676617	
mm_10695.1	chr2	22622406	22622606	+	1	NA	NA	NA	179	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.120000	0.671642	
mm_118223.1	chr13	110541272	110541472	-	1	NA	NA	NA	146328	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.010000	0.383085	
mm_135973.1	chr16	75016076	75016276	-	1	NA	NA	NA	569885	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.010000	0.388060	
mm_143897.1	chr17	84682800	84683000	-	1	NA	NA	NA	111	NM_031884	27409	Mm.289590	NM_031884	ENSMUSG00000040505	Abcg5	cmp|sterolin-1|trac	ATP-binding cassette, sub-family G (WHITE), member 5	protein-coding	0.015000	0.567164	
mm_42258.1	chr5	114065344	114065544	+	1	NA	NA	NA	25936	NM_026805	68666	Mm.63584	NM_026805	ENSMUSG00000042078	Svop	1110030H18Rik|AI415691|msvop	SV2 related protein	protein-coding	0.025000	0.532338	
mm_71384.1	chr8	45999189	45999389	+	1	NA	NA	NA	561	NM_001039562	654824	Mm.334517	NM_001039562	ENSMUSG00000050914	Ankrd37	-	ankyrin repeat domain 37	protein-coding	0.035000	0.572139	
mm_60015.1	chr7	30763658	30763858	+	1	NA	NA	NA	2	NM_001166174	73712	Mm.30138	NM_028618	ENSMUSG00000060962	Dmkn	1110014F24Rik|AW561900|C130074A08|SK30|SK89|cI-36	dermokine	protein-coding	0.005000	0.527363	
mm_72712.1	chr8	84995857	84996057	+	1	NA	NA	NA	5362	NM_001167991	170833	Mm.247775	NM_133255	ENSMUSG00000052566	Hook2	A630054I03Rik	hook microtubule tethering protein 2	protein-coding	0.065000	0.641791	
mm_158887.1	chr1	11263861	11264061	+	1	NA	NA	NA	-2	NM_001033636	109294	Mm.123247	NM_029525	ENSMUSG00000048960	Prex2	6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2	protein-coding	0.010000	0.487562	
mm_14366.1	chr2	129618361	129618561	+	1	NA	NA	NA	25292	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.035000	0.522388	
mm_158467.1	chrX	140956570	140956770	-	1	NA	NA	NA	41	NM_016883	53380	Mm.17640	NM_016883	ENSMUSG00000031429	Psmd10	AW554874	proteasome (prosome, macropain) 26S subunit, non-ATPase, 10	protein-coding	0.035000	0.492537	
mm_84828.1	chr9	78108944	78109144	-	1	NA	NA	NA	21	NM_001081490	71538	Mm.28584	NM_023605	ENSMUSG00000001366	Fbxo9	9030401P18Rik|AA986398	f-box protein 9	protein-coding	0.060000	0.532338	-55(GCCTTGAAAAGG,-,0.00)
mm_167493.1	chr9	7699814	7700014	+	1	NA	NA	NA	-4283	NR_126562	102722	Mm.334941	NR_126562	ENSMUSG00000086381	AV064505	-	expressed sequence AV064505	ncRNA	0.000000	0.298507	
mm_144306.1	chr18	12504065	12504265	+	1	NA	NA	NA	-34	NM_001347461	16774	Mm.42012	NM_010680	ENSMUSG00000024421	Lama3	Lama3B|[a]3B	laminin, alpha 3	protein-coding	0.020000	0.587065	
mm_43313.1	chr5	134945028	134945228	+	1	NA	NA	NA	1806	NM_009903	12740	Mm.7339	NM_009903	ENSMUSG00000047501	Cldn4	Cep-r|Cpetr|Cpetr1	claudin 4	protein-coding	0.005000	0.442786	
mm_63842.1	chr7	135651816	135652016	+	1	NA	NA	NA	17	NM_001316681	19267	Mm.945	NM_011212	ENSMUSG00000041836	Ptpre	PTPe|PTPepsilon|RPTPepsilon	protein tyrosine phosphatase, receptor type, E	protein-coding	0.020000	0.597015	
mm_12033.1	chr2	58754816	58755016	+	1	NA	NA	NA	-268	NM_001289659	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.015000	0.452736	
mm_51919.1	chr6	91234196	91234396	+	1	NA	NA	NA	21532	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.020000	0.537313	
mm_168778.1	chr12	17549804	17550004	+	1	NA	NA	NA	5031	NM_013614	18263	Mm.34102	NM_013614	ENSMUSG00000011179	Odc1	ODC	ornithine decarboxylase, structural 1	protein-coding	0.025000	0.487562	-73(GGCTATTAAAGA,-,0.00)
mm_23369.1	chr3	55461761	55461961	+	1	NA	NA	NA	103	NM_001195540	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.045000	0.562189	
mm_130421.1	chr15	98093153	98093353	-	1	NA	NA	NA	316	NM_144851	223870	Mm.384023	NM_144851	ENSMUSG00000033075	Senp1	2310046A20Rik|D15Ertd528e|E330036L07Rik|suPr-2	SUMO1/sentrin specific peptidase 1	protein-coding	0.115000	0.746269	
mm_121829.1	chr14	20496578	20496778	-	1	NA	NA	NA	223	NM_029104	74843	Mm.295241	NM_029104	ENSMUSG00000021815	Mss51	4833444M15Rik|Zmynd17	MSS51 mitochondrial translational activator	protein-coding	0.005000	0.412935	
mm_144811.1	chr18	36287181	36287381	+	1	NA	NA	NA	6119	NM_008989	19290	Mm.231802	NM_008989	ENSMUSG00000043991	Pura	CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.120000	0.781095	
mm_163426.1	chr12	82251367	82251567	-	1	NA	NA	NA	-59882	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.005000	0.482587	
mm_95297.1	chr11	46056127	46056327	+	1	NA	NA	NA	243	NM_001291891	11492	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.090000	0.651741	
mm_29585.1	chr3	117360355	117360555	-	1	NA	NA	NA	421	NM_177664	229791	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	0.015000	0.587065	
mm_34874.1	chr4	155562320	155562520	+	1	NA	NA	NA	28	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.015000	0.512438	
mm_98063.1	chr11	85832714	85832914	+	1	NA	NA	NA	199	NM_009324	21385	Mm.287052	NM_009324	ENSMUSG00000000093	Tbx2	-	T-box 2	protein-coding	0.065000	0.621891	
mm_143573.1	chr17	74315996	74316196	-	1	NA	NA	NA	115	NM_001146224	66310	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0.065000	0.616915	
mm_54105.1	chr6	16898306	16898506	-	1	NA	NA	NA	35	NM_031198	21426	Mm.36217	NM_031198	ENSMUSG00000029553	Tfec	BB107417|Tcfec|bHLHe34	transcription factor EC	protein-coding	0.015000	0.422886	
mm_90509.1	chr10	128042276	128042476	+	1	NA	NA	NA	7030	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.005000	0.512438	
mm_122847.1	chr14	54740027	54740227	-	1	NA	NA	NA	-27953	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.010000	0.417910	
mm_14189.1	chr2	127080475	127080675	+	1	NA	NA	NA	9918	NM_026678	109778	Mm.22028	NM_026678	ENSMUSG00000001999	Blvra	0610006A11Rik|2500001N03Rik|Blvr	biliverdin reductase A	protein-coding	0.030000	0.502488	
mm_103786.1	chr11	82807441	82807641	-	1	NA	NA	NA	21502	NM_026097	67338	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.010000	0.383085	
mm_83001.1	chr9	36726498	36726698	-	1	NA	NA	NA	60	NM_007691	12649	Mm.16753	NM_007691	ENSMUSG00000032113	Chek1	C85740|Chk1|rad27	checkpoint kinase 1	protein-coding	0.055000	0.572139	
mm_107863.1	chr12	69907640	69907840	+	1	NA	NA	NA	-14577	NM_201519	399510	Mm.291936	NM_201519	ENSMUSG00000034761	Map4k5	4432415E19Rik|GCKR|KHS|MAPKKKK5	mitogen-activated protein kinase kinase kinase kinase 5	protein-coding	0.015000	0.502488	
mm_91112.1	chr10	19185806	19186006	-	1	NA	NA	NA	18668	NR_038022	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.025000	0.492537	
mm_82497.1	chr9	18721986	18722186	-	1	NA	NA	NA	33547	NM_146606	18322	Mm.246530	NM_146606	ENSMUSG00000054141	Olfr24	MOR132-1|MTPCR51	olfactory receptor 24	protein-coding	0.020000	0.467662	
mm_62682.1	chr7	110003475	110003675	+	1	NA	NA	NA	3071	NR_037959	69781	Mm.440728	NR_037959	ENSMUSG00000101585	1600010M07Rik	-	RIKEN cDNA 1600010M07 gene	ncRNA	0.015000	0.427861	
mm_80840.1	chr9	98003336	98003536	+	1	NA	NA	NA	16	NR_110443	66737	Mm.445908	NR_110443	ENSMUSG00000090255	4921534H16Rik	-	RIKEN cDNA 4921534H16 gene	ncRNA	0.015000	0.427861	39(CCTTTTAAGTCT,+,0.00)
mm_95254.1	chr11	44621119	44621319	+	1	NA	NA	NA	3119	NM_001290710	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.040000	0.601990	
mm_156319.1	chrX	137049520	137049720	+	1	NA	NA	NA	26	NM_146261	245622	Mm.260106	NM_146261	ENSMUSG00000042595	Fam199x	-	family with sequence similarity 199, X-linked	protein-coding	0.140000	0.776119	
mm_12718.1	chr2	78051068	78051268	+	1	NA	NA	NA	-9	NR_108098	78158	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0.035000	0.477612	
mm_47788.1	chr5	132195082	132195282	-	1	NA	NA	NA	314913	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.010000	0.527363	
mm_6003.1	chr1	58973219	58973419	-	1	NA	NA	NA	163	NM_172406	70827	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	0.095000	0.671642	
mm_54147.1	chr6	22343358	22343558	-	1	NA	NA	NA	12623	NM_138587	27999	Mm.490307	NM_138587	ENSMUSG00000029672	Fam3c	D6Wsu176e|Ilei	family with sequence similarity 3, member C	protein-coding	0.000000	0.328358	-74(TTTTTAATGGCC,+,0.00)
mm_127412.1	chr15	101256309	101256509	+	1	NA	NA	NA	-10437	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.030000	0.577114	-74(CCCTTTAGAGAC,+,0.00)
mm_2464.1	chr1	105356974	105357174	+	1	NA	NA	NA	-364	NM_001160368	320311	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	0.005000	0.557214	
mm_100198.1	chr11	116753083	116753283	+	1	NA	NA	NA	1016	NR_003364	193217	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	0.015000	0.542289	
mm_22429.1	chr2	181599152	181599352	-	1	NA	NA	NA	-105	NM_172676	229011	Mm.205422	NM_172676	ENSMUSG00000038605	Samd10	D930033N23Rik|E130318E08	sterile alpha motif domain containing 10	protein-coding	0.105000	0.691542	
mm_74614.1	chr8	12672016	12672216	-	1	NA	NA	NA	-16	NM_198031	259279	Mm.142095	NM_198031	ENSMUSG00000000759	Tubgcp3	GCP3|Spc98p	tubulin, gamma complex associated protein 3	protein-coding	0.155000	0.686567	
mm_97432.1	chr11	78100174	78100374	+	1	NA	NA	NA	5601	NM_145430	216971	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0.010000	0.393035	
mm_120110.1	chr14	59440872	59441072	+	1	NA	NA	NA	-9	NM_026908	69008	Mm.179091	NM_026908	ENSMUSG00000021981	Cab39l	1500031K13Rik|2810425O13Rik|4930520C08Rik|AA589432|MO2L	calcium binding protein 39-like	protein-coding	0.125000	0.686567	
mm_149673.1	chr19	20381949	20382149	+	1	NA	NA	NA	8622	NM_010730	16952	Mm.248360	NM_010730	ENSMUSG00000024659	Anxa1	Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1	annexin A1	protein-coding	0.005000	0.373134	
mm_88897.1	chr10	81150907	81151107	+	1	NA	NA	NA	14736	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.005000	0.323383	
mm_60766.1	chr7	45554734	45554934	+	1	NA	NA	NA	-94	NM_025330	66065	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.000000	0.567164	
mm_151629.1	chr19	3912656	3912856	-	1	NA	NA	NA	18	NM_144870	225887	Mm.44227	NM_144870	ENSMUSG00000059734	Ndufs8	BC021616|CI-23kD|TYKY	NADH dehydrogenase (ubiquinone) Fe-S protein 8	protein-coding	0.050000	0.606965	
mm_29336.1	chr3	108200330	108200530	-	1	NA	NA	NA	404	NM_028061	72023	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	0.030000	0.587065	-19(GGCTTGAAAAGA,-,0.00)
mm_15819.1	chr2	164562614	164562814	+	1	NA	NA	NA	-2	NM_026323	67701	Mm.27289	NM_026323	ENSMUSG00000017723	Wfdc2	1600023A02Rik|HE4|WAP5	WAP four-disulfide core domain 2	protein-coding	0.050000	0.666667	
mm_22777.1	chr3	20308275	20308475	+	1	NA	NA	NA	-32642	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.005000	0.383085	
mm_170575.1	chr19	53929075	53929275	+	1	NA	NA	NA	-15131	NM_001168505	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.010000	0.348259	
mm_32748.1	chr4	116678688	116678888	+	1	NA	NA	NA	-6811	NM_011034	18477	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0.005000	0.437811	
mm_104983.1	chr11	100264956	100265156	-	1	NA	NA	NA	-4027	NM_010663	16667	Mm.14046	NM_010663	ENSMUSG00000035557	Krt17	K17|Krt1-17	keratin 17	protein-coding	0.035000	0.601990	
mm_138100.1	chr17	34092261	34092461	+	1	NA	NA	NA	-18	NM_008206	15001	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	0.015000	0.497512	
mm_37544.1	chr4	125124855	125125055	-	1	NA	NA	NA	2926	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.005000	0.562189	
mm_72702.1	chr8	84978494	84978694	+	1	NA	NA	NA	154	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.105000	0.671642	
mm_69294.1	chr7	128235934	128236134	-	1	NA	NA	NA	-1323	NM_146205	233912	Mm.475117	NM_146205	ENSMUSG00000042178	Armc5	AW049683|BC032200	armadillo repeat containing 5	protein-coding	0.015000	0.437811	
mm_45728.1	chr5	86197752	86197952	-	1	NA	NA	NA	49	NM_001310653	14715	Mm.26791	NM_010323	ENSMUSG00000029255	Gnrhr	-	gonadotropin releasing hormone receptor	protein-coding	0.025000	0.467662	
mm_98842.1	chr11	97574227	97574427	+	1	NA	NA	NA	799	NM_018873	56013	Mm.342665	NM_018873	ENSMUSG00000038453	Srcin1	P140|SNIP|mKIAA1684|p140Cap	SRC kinase signaling inhibitor 1	protein-coding	0.015000	0.616915	
mm_146189.1	chr18	76059383	76059583	+	1	NA	NA	NA	38988	NR_045365	73009	Mm.443541	NR_045365		2900057B20Rik	-	RIKEN cDNA 2900057B20 gene	ncRNA	0.065000	0.646766	
mm_33319.1	chr4	129082650	129082850	+	1	NA	NA	NA	-22780	NM_025452	66260	Mm.25295	NM_025452	ENSMUSG00000028786	Tmem54	1810017F10Rik|AI507302	transmembrane protein 54	protein-coding	0.025000	0.472637	
mm_91509.1	chr10	37136934	37137134	-	1	NA	NA	NA	1892	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.120000	0.716418	
mm_51923.1	chr6	91265853	91266053	+	1	NA	NA	NA	53189	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.025000	0.587065	
mm_79126.1	chr9	46913526	46913726	+	1	NA	NA	NA	23	NR_015605	73040	Mm.265384	NR_015605	ENSMUSG00000099696	2900052N01Rik	AU067665	RIKEN cDNA 2900052N01 gene	ncRNA	0.010000	0.547264	
mm_161264.1	chr14	5050534	5050734	+	1	NA	NA	NA	5	NM_175393	108978	Mm.396152	NM_175393	ENSMUSG00000096197	4930555G01Rik	-	RIKEN cDNA 4930555G01 gene	protein-coding	0.005000	0.467662	
mm_103055.1	chr11	69818363	69818563	-	1	NA	NA	NA	-23	NM_175368	108803	Mm.73263	NM_175368	ENSMUSG00000044084	4933402P03Rik	-	RIKEN cDNA 4933402P03 gene	protein-coding	0.005000	0.552239	
mm_45829.1	chr5	87694552	87694752	-	1	NA	NA	NA	4773	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.000000	0.497512	
mm_11668.1	chr2	35282335	35282535	+	1	NA	NA	NA	55	NM_146120	227753	Mm.443	NM_146120	ENSMUSG00000026879	Gsn	ADF	gelsolin	protein-coding	0.100000	0.706468	
mm_59866.1	chr7	30184099	30184299	+	1	NA	NA	NA	28	NM_009944	12865	Mm.423030	NM_009944	ENSMUSG00000074218	Cox7a1	COX7A|COX7AH|COX7AM	cytochrome c oxidase subunit VIIa 1	protein-coding	0.045000	0.611940	
mm_758.1	chr1	43933928	43934128	+	1	NA	NA	NA	34	NM_009418	22019	Mm.401675	NM_009418	ENSMUSG00000041763	Tpp2	TPP-2|TppII	tripeptidyl peptidase II	protein-coding	0.105000	0.671642	
mm_76848.1	chr8	105323228	105323428	-	1	NA	NA	NA	2948	NM_177449	234684	Mm.381717	NM_177449	ENSMUSG00000041679	Lrrc29	A630024J02Rik|FBL9|FBXL9	leucine rich repeat containing 29	protein-coding	0.010000	0.507463	
mm_55013.1	chr6	48840507	48840707	-	1	NA	NA	NA	381	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.015000	0.572139	
mm_157921.1	chrX	78583755	78583955	-	1	NA	NA	NA	42	NM_001289683	546336	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	0.065000	0.631841	
mm_85395.1	chr9	103288199	103288399	-	1	NA	NA	NA	-2	NM_027918	71775	Mm.18802	NM_027918	ENSMUSG00000033688	1300017J02Rik	Ica|mICA	RIKEN cDNA 1300017J02 gene	protein-coding	0.020000	0.562189	-85(GGCCAGATAAGG,-,0.00)
mm_159116.1	chr2	60284469	60284669	-	1	NA	NA	NA	-85	NM_001290660	66205	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.010000	0.407960	
mm_12632.1	chr2	74704994	74705194	+	1	NA	NA	NA	-395	NM_001290730	15437	Mm.280673	NM_008276	ENSMUSG00000027102	Hoxd8	4921540P06Rik|AI047735|Hox-4.3|Hox-5.4	homeobox D8	protein-coding	0.075000	0.671642	
mm_171519.1	chr4	146565083	146565283	-	1	NA	NA	NA	-18310	NR_045468	67524	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	0.055000	0.527363	
mm_86643.1	chr10	14390996	14391196	+	1	NA	NA	NA	153940	NM_001002268	215798	Mm.440142	NM_001002268	ENSMUSG00000039116	Adgrg6	1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126	adhesion G protein-coupled receptor G6	protein-coding	0.030000	0.462687	
mm_28956.1	chr3	100489205	100489405	-	1	NA	NA	NA	-113	NM_001142952	74645	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.145000	0.810945	
mm_98068.1	chr11	85886289	85886489	+	1	NA	NA	NA	-3674	NM_011536	21387	Mm.275336	NM_011536	ENSMUSG00000000094	Tbx4	3930401C23	T-box 4	protein-coding	0.065000	0.706468	
mm_99601.1	chr11	104550584	104550784	+	1	NA	NA	NA	21	NM_010858	17896	Mm.390355	NM_010858	ENSMUSG00000061086	Myl4	ALC1|AMLC|ELC|ELC1a|GT1|MLC1a|Myla	myosin, light polypeptide 4	protein-coding	0.065000	0.597015	
mm_55217.1	chr6	52226054	52226254	-	1	NA	NA	NA	1216	NM_010456	15405	Mm.4694	NM_010456	ENSMUSG00000038227	Hoxa9	D6a9|Hox-1.7	homeobox A9	protein-coding	0.070000	0.626866	
mm_172571.1	chr8	112014955	112015155	-	1	NA	NA	NA	3696	NM_020584	57321	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	0.035000	0.502488	
mm_78390.1	chr9	28510928	28511128	+	1	NA	NA	NA	719759	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.010000	0.363184	-74(GAGTCTAAAAAC,-,0.00)
mm_134587.1	chr16	20426111	20426311	-	1	NA	NA	NA	183	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.095000	0.651741	
mm_24532.1	chr3	93277968	93278168	+	1	NA	NA	NA	-41681	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.035000	0.442786	32(GTCTTTAAACCC,+,0.00)
mm_154922.1	chrX	23692987	23693187	+	1	NA	NA	NA	36	NM_001305675	72404	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	0.115000	0.656716	
mm_134182.1	chr16	10960895	10961095	-	1	NA	NA	NA	32126	NM_019980	56722	Mm.294753	NM_019980	ENSMUSG00000022500	Litaf	3222402J11Rik|C85531|N4WBP3|TBX1	LPS-induced TN factor	protein-coding	0.045000	0.587065	
mm_145316.1	chr18	54422276	54422476	+	1	NA	NA	NA	81	NR_040338	77433	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.000000	0.447761	
mm_3330.1	chr1	137931758	137931958	+	1	NA	NA	NA	-34597	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.015000	0.358209	
mm_159228.1	chr2	131187039	131187239	-	1	NA	NA	NA	191	NM_001111075	12531	Mm.38444	NM_023117	ENSMUSG00000027330	Cdc25b	AI604853	cell division cycle 25B	protein-coding	0.055000	0.671642	
mm_84295.1	chr9	63377595	63377795	-	1	NA	NA	NA	157	NM_011840	23938	Mm.325746	NM_011840	ENSMUSG00000058444	Map2k5	AI324775|AI428457|MEK5|Mapkk5|Prkmk5	mitogen-activated protein kinase kinase 5	protein-coding	0.095000	0.741294	
mm_41655.1	chr5	98854319	98854519	+	1	NA	NA	NA	4	NM_001310677	110075	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0.030000	0.587065	
mm_58602.1	chr7	5051406	5051606	+	1	NA	NA	NA	-26	NM_026900	68992	Mm.41484	NM_026900	ENSMUSG00000055633	Zfp580	1500015O20Rik|AI838225|Znf580	zinc finger protein 580	protein-coding	0.105000	0.681592	
mm_7212.1	chr1	93101737	93101937	-	1	NA	NA	NA	37	NM_001294149	16560	Mm.276408	NM_008440	ENSMUSG00000014602	Kif1a	ATSV|C630002N23Rik|Gm1626|Kns1	kinesin family member 1A	protein-coding	0.075000	0.686567	
mm_163029.1	chr11	50543773	50543973	+	1	NA	NA	NA	-58212	NM_175643	216725	Mm.110597	NM_175643	ENSMUSG00000036545	Adamts2	ADAM-TS 2|ADAM-TS2|ADAMTS-2|PC I-NP|PCINP|pNPI	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 2	protein-coding	0.035000	0.522388	
mm_89081.1	chr10	83543874	83544074	+	1	NA	NA	NA	33	NM_001033375	319277	Mm.491194	NM_001033375	ENSMUSG00000034560	Washc4	A230046K03Rik|AA589518|Kiaa1033|mKIAA1033	WASH complex subunit 4	protein-coding	0.125000	0.731343	
mm_38837.1	chr4	149165054	149165254	-	1	NA	NA	NA	1553	NM_001081274	110208	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.040000	0.532338	8(GTCCTTAAAGGA,-,0.00)
mm_93013.1	chr10	87492388	87492588	-	1	NA	NA	NA	1172	NM_008553	17172	Mm.136217	NM_008553	ENSMUSG00000020052	Ascl1	AI225900|ASH1|Mash1|bHLHa46	achaete-scute family bHLH transcription factor 1	protein-coding	0.075000	0.606965	
mm_25474.1	chr3	108856037	108856237	+	1	NA	NA	NA	-15635	NM_011504	20912	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.020000	0.502488	36(CTCCTTTAAAGC,-,0.00),37(TCCTTTAAAGCG,+,0.00),38(CCTTTAAAGCGC,+,0.00)
mm_96466.1	chr11	67617059	67617259	+	1	NA	NA	NA	20604	NM_001277079	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.010000	0.492537	
mm_144766.1	chr18	35772025	35772225	+	1	NA	NA	NA	566	NM_019912	56550	Mm.180052	NM_019912	ENSMUSG00000091896	Ube2d2a	1500034D03Rik|Ubc2e|Ube2d2|ubc4	ubiquitin-conjugating enzyme E2D 2A	protein-coding	0.100000	0.736318	
mm_42228.1	chr5	113510742	113510942	+	1	NA	NA	NA	-39578	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.015000	0.601990	
mm_92245.1	chr10	70288438	70288638	-	1	NA	NA	NA	43262	NM_025807	66859	Mm.19325	NM_025807	ENSMUSG00000037762	Slc16a9	1200003C15Rik|4930425B13Rik|AI552636	solute carrier family 16 (monocarboxylic acid transporters), member 9	protein-coding	0.015000	0.532338	-30(CACTATAAAAGG,-,0.00)
mm_46960.1	chr5	115127424	115127624	-	1	NA	NA	NA	7451	NM_175352	106840	Mm.29241	NM_175352	ENSMUSG00000046562	Unc119b	AA407659|AI414892	unc-119 lipid binding chaperone B	protein-coding	0.035000	0.572139	
mm_75139.1	chr8	35261343	35261543	-	1	NA	NA	NA	-114298	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.020000	0.407960	
mm_62945.1	chr7	119526185	119526385	+	1	NA	NA	NA	20	NM_178758	272428	Mm.185183	NM_178758	ENSMUSG00000030972	Acsm5	C730019D22|C730027J19Rik	acyl-CoA synthetase medium-chain family member 5	protein-coding	0.005000	0.537313	
mm_103345.1	chr11	74724263	74724463	-	1	NA	NA	NA	21	NM_013625	18472	Mm.397111	NM_013625	ENSMUSG00000020745	Pafah1b1	LIS-1|Lis1|MMS10-U|Mdsh|Ms10u|Pafaha	platelet-activating factor acetylhydrolase, isoform 1b, subunit 1	protein-coding	0.140000	0.766169	
mm_22937.1	chr3	31228380	31228580	+	1	NA	NA	NA	78560	NM_008770	18417	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.005000	0.532338	23(GACCATAAGAGC,-,0.00)
mm_71716.1	chr8	61947449	61947649	+	1	NA	NA	NA	19462	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.005000	0.278607	
mm_131533.1	chr16	17711537	17711737	+	1	NA	NA	NA	11263	NM_001285886	94112	Mm.208970	NM_033609	ENSMUSG00000012114	Med15	A230074L19Rik|AW536074|Pcqap|mPcqap	mediator complex subunit 15	protein-coding	0.035000	0.442786	
mm_91661.1	chr10	42864131	42864331	-	1	NA	NA	NA	3719	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.050000	0.562189	
mm_9414.1	chr1	172297899	172298099	-	1	NA	NA	NA	65	NM_178405	98660	Mm.207432	NM_178405	ENSMUSG00000007097	Atp1a2	AW060654|Atpa-3|mKIAA0778	ATPase, Na+/K+ transporting, alpha 2 polypeptide	protein-coding	0.015000	0.577114	-33(ACCTATTTAAAG,-,0.00)
mm_49755.1	chr6	34753489	34753689	+	1	NA	NA	NA	-26843	NM_001289657	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.025000	0.447761	
mm_60516.1	chr7	44479743	44479943	+	1	NA	NA	NA	-4674	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.482587	
mm_87386.1	chr10	45066981	45067181	+	1	NA	NA	NA	-133	NM_011156	19072	Mm.10281	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PEP|Pop	prolyl endopeptidase	protein-coding	0.180000	0.810945	
mm_85120.1	chr9	95462503	95462703	-	1	NA	NA	NA	49393	NM_026476	67958	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0.000000	0.353234	
mm_33814.1	chr4	135312874	135313074	+	1	NA	NA	NA	-40214	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.010000	0.487562	
mm_84560.1	chr9	67733679	67733879	-	1	NA	NA	NA	-4202	NR_106101	102465716		NR_106101	ENSMUSG00000098446	Mir7242	Gm27809|mmu-mir-7242	microRNA 7242	ncRNA	0.030000	0.537313	
mm_71214.1	chr8	40892651	40892851	+	1	NA	NA	NA	30384	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.000000	0.308458	60(GCTTTTAAATAC,+,0.00)
mm_41920.1	chr5	105608282	105608482	+	1	NA	NA	NA	88911	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.030000	0.477612	
mm_85430.1	chr9	103692665	103692865	-	1	NA	NA	NA	69072	NM_178638	81907	Mm.384704	NM_178638	ENSMUSG00000042757	Tmem108	AI462967|B130017P16Rik|R74726	transmembrane protein 108	protein-coding	0.015000	0.572139	
mm_131086.1	chr16	4835345	4835545	+	1	NA	NA	NA	29	NM_030192	78809	Mm.325551	NM_030192	ENSMUSG00000022518	4930562C15Rik	-	RIKEN cDNA 4930562C15 gene	protein-coding	0.010000	0.552239	
mm_151788.1	chr19	5388631	5388831	-	1	NA	NA	NA	-28	NM_016882	20227	Mm.34562	NM_016882	ENSMUSG00000039148	Sart1	U5-110K	squamous cell carcinoma antigen recognized by T cells 1	protein-coding	0.100000	0.666667	
mm_149893.1	chr19	25406983	25407183	+	1	NA	NA	NA	-98623	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.040000	0.686567	
mm_45392.1	chr5	66151093	66151293	-	1	NA	NA	NA	-215	NM_178446	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.050000	0.457711	
mm_8245.1	chr1	138598831	138599031	-	1	NA	NA	NA	20826	NM_021605	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.000000	0.472637	
mm_25801.1	chr3	127789109	127789309	+	1	NA	NA	NA	-704	NM_145133	211550	Mm.31852	NM_145133	ENSMUSG00000046688	Tifa	T2bp	TRAF-interacting protein with forkhead-associated domain	protein-coding	0.015000	0.462687	
mm_96655.1	chr11	69373675	69373875	+	1	NA	NA	NA	-4349	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.050000	0.502488	
mm_94912.1	chr11	29455340	29455540	+	1	NA	NA	NA	59593	NM_026465	67939	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0.010000	0.303483	-100(TTTTTAAAAGCC,+,0.00)
mm_161816.1	chr17	69439247	69439447	+	1	NA	NA	NA	21	NM_001145192	320722	Mm.400254	NM_001145192	ENSMUSG00000091636	Akain1	A330050F15Rik	A kinase (PRKA) anchor inhibitor 1	protein-coding	0.150000	0.776119	
mm_7899.1	chr1	133610174	133610374	-	1	NA	NA	NA	6	NM_009227	20643	Mm.249110	NM_009227	ENSMUSG00000090553	Snrpe	AL022645|C76690|SME	small nuclear ribonucleoprotein E	protein-coding	0.090000	0.611940	
mm_6051.1	chr1	60097809	60098009	-	1	NA	NA	NA	-2	NM_021312	57750	Mm.281079	NM_021312	ENSMUSG00000026019	Wdr12	4933402C23Rik|Ytm1|Ytm1p	WD repeat domain 12	protein-coding	0.030000	0.417910	-93(GACCCTAAATGC,-,0.00),8(GAGTCTAAAGGG,-,0.00)
mm_143161.1	chr17	57224226	57224426	-	1	NA	NA	NA	3810	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.035000	0.601990	
mm_147384.1	chr18	43737429	43737629	-	1	NA	NA	NA	-292	NM_009258	20730	Mm.272	NM_009258	ENSMUSG00000024503	Spink1	Spink3|p12	serine peptidase inhibitor, Kazal type 1	protein-coding	0.005000	0.462687	
mm_151648.1	chr19	4059363	4059563	-	1	NA	NA	NA	-169	NM_144869	225884	Mm.440201	NM_144869	ENSMUSG00000058216	Gstp3	-	glutathione S-transferase pi 3	protein-coding	0.015000	0.552239	
mm_27914.1	chr3	79531623	79531823	-	1	NA	NA	NA	35956	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.015000	0.522388	
mm_82933.1	chr9	35194447	35194647	-	1	NA	NA	NA	5358	NM_001177847	117149	Mm.23987	NM_054096	ENSMUSG00000032041	Tirap	AA407980|C130027E04Rik|Mal|Tlr4ap|Wyatt	toll-interleukin 1 receptor (TIR) domain-containing adaptor protein	protein-coding	0.000000	0.313433	40(TTCTCTATAAAG,-,0.00)
mm_161509.1	chr15	98378991	98379191	-	1	NA	NA	NA	17	NM_147036	259038	Mm.377802	NM_147036	ENSMUSG00000056184	Olfr283	MOR160-1	olfactory receptor 283	protein-coding	0.035000	0.532338	
mm_157860.1	chrX	75113551	75113751	-	1	NA	NA	NA	17365	NM_008621	17524	Mm.391267	NM_008621	ENSMUSG00000031402	Mpp1	55kDa|C130070C03Rik|p55	membrane protein, palmitoylated	protein-coding	0.010000	0.487562	
mm_146752.1	chr18	16764707	16764907	-	1	NA	NA	NA	44439	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.005000	0.358209	
mm_14555.1	chr2	133552911	133553111	+	1	NA	NA	NA	852	NM_007553	12156	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.080000	0.696517	
mm_89842.1	chr10	106879323	106879523	+	1	NA	NA	NA	244241	NM_001142804	380660	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding	0.010000	0.368159	
mm_114681.1	chr13	80886398	80886598	+	1	NA	NA	NA	3076	NM_001042591	105171	Mm.423137	NM_001042591	ENSMUSG00000074794	Arrdc3	AI450344|mKIAA1376	arrestin domain containing 3	protein-coding	0.035000	0.532338	
mm_49680.1	chr6	32511044	32511244	+	1	NA	NA	NA	3	NR_040277	319849	Mm.440860	NR_040277	ENSMUSG00000086763	Plxna4os1	B230378P21Rik	plexin A4, opposite strand 1	ncRNA	0.030000	0.552239	
mm_101083.1	chr11	11769832	11770032	-	1	NA	NA	NA	39030	NM_021891	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.000000	0.497512	
mm_108185.1	chr12	76546982	76547182	+	1	NA	NA	NA	843	NR_046044	100504549	Mm.440349	NR_046044		AI463170	-	expressed sequence AI463170	ncRNA	0.050000	0.587065	
mm_125823.1	chr15	74957071	74957271	+	1	NA	NA	NA	2065	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.010000	0.472637	
mm_98537.1	chr11	95009842	95010042	+	1	NA	NA	NA	63	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.115000	0.716418	
mm_44117.1	chr5	149441734	149441934	+	1	NA	NA	NA	2174	NM_001310765	75860	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	0.010000	0.487562	-30(GGCTTTATGAGG,-,0.00)
mm_112595.1	chr13	14065891	14066091	+	1	NA	NA	NA	2207	NM_198122	94246	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.000000	0.318408	-57(CCCTTTTAAAGG,-,0.00),-56(CCTTTTAAAGGT,+,0.00)
mm_26532.1	chr3	146117443	146117643	+	1	NA	NA	NA	-4248	NM_134160	171166	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	0.040000	0.656716	
mm_130323.1	chr15	97596162	97596362	-	1	NA	NA	NA	109560	NM_028003	71919	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.015000	0.477612	
mm_64181.1	chr7	141459404	141459604	+	1	NA	NA	NA	-1590	NM_001025103	213573	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.060000	0.626866	
mm_148348.1	chr18	84676577	84676777	-	1	NA	NA	NA	5382	NM_001289531	66054	Mm.29646	NM_023149	ENSMUSG00000024644	Cndp2	0610010E05Rik|C76600|Cn2|Dip-2|Pep-1|Pep1	CNDP dipeptidase 2 (metallopeptidase M20 family)	protein-coding	0.000000	0.472637	
mm_159038.1	chr1	180245677	180245877	-	1	NA	NA	NA	173	NM_011183	19165	Mm.330850	NM_011183	ENSMUSG00000010609	Psen2	ALG-3|Ad4h|Alg3|PS-2|PS2|Psnl2|STM2	presenilin 2	protein-coding	0.025000	0.527363	
mm_25398.1	chr3	107241694	107241894	+	1	NA	NA	NA	-2087	NM_001044382	246691	Mm.490697	NM_001044382	ENSMUSG00000070368	Prok1	EG-VEGF	prokineticin 1	protein-coding	0.025000	0.507463	-34(TCTTATAAAGCA,+,0.00)
mm_162229.1	chrX	149784357	149784557	+	1	NA	NA	NA	-22	NM_001114400	434866	Mm.491025	NM_001114400	ENSMUSG00000096834	Gm15127	ENSMUSG00000072928|OTTMUSG00000019138	predicted gene 15127	protein-coding	0.020000	0.562189	
mm_158202.1	chrX	105391644	105391844	-	1	NA	NA	NA	10	NR_015552	100043213	Mm.388967	NR_015552	ENSMUSG00000087620	5330434G04Rik	-	RIKEN cDNA 5330434G04 gene	ncRNA	0.010000	0.492537	
mm_87504.1	chr10	52319779	52319979	+	1	NA	NA	NA	62245	NM_053187	94221	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0.025000	0.587065	
mm_170882.1	chr2	20900061	20900261	+	1	NA	NA	NA	67560	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.065000	0.567164	-64(AACTTTAAATGG,-,0.00)
mm_76072.1	chr8	78813002	78813202	-	1	NA	NA	NA	8050	NM_001191004	78651	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.030000	0.412935	
mm_67208.1	chr7	74342040	74342240	-	1	NA	NA	NA	212640	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.030000	0.472637	
mm_35665.1	chr4	43562203	43562403	-	1	NA	NA	NA	280	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.105000	0.696517	
mm_38171.1	chr4	135218533	135218733	-	1	NA	NA	NA	54127	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.060000	0.522388	
mm_80793.1	chr9	96196163	96196363	+	1	NA	NA	NA	-12	NM_178667	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.175000	0.746269	
mm_12428.1	chr2	70563546	70563746	+	1	NA	NA	NA	-289	NR_040496	68986	Mm.437697	NR_040496	ENSMUSG00000087264	Gad1os	1500002O10Rik	glutamate decarboxylase 1, opposite strand	ncRNA	0.080000	0.696517	
mm_82242.1	chr9	4309414	4309614	-	1	NA	NA	NA	-20	NM_001326359	67618	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0.090000	0.616915	-57(CGCCTGAAAAGG,-,0.00)
mm_146226.1	chr18	77065604	77065804	+	1	NA	NA	NA	24	NM_001164168	17344	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0.115000	0.721393	
mm_93902.1	chr10	126692432	126692632	-	1	NA	NA	NA	17859	NR_105841	102465224		NR_105841	ENSMUSG00000098756	Mir378d	Gm27650|mmu-mir-378d	microRNA 378d	ncRNA	0.010000	0.442786	
mm_35972.1	chr4	53158328	53158528	-	1	NA	NA	NA	1467	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.000000	0.338308	
mm_1087.1	chr1	59606649	59606849	+	1	NA	NA	NA	64085	NM_009460	22218	Mm.362118	NM_009460	ENSMUSG00000026021	Sumo1	GMP1|PIC1|SENTRIN|SMT3|SMT3H3|SMTP3|SUMO-1|Smt3C|Ubl1	small ubiquitin-like modifier 1	protein-coding	0.040000	0.547264	
mm_116953.1	chr13	56135743	56135943	-	1	NA	NA	NA	-293	NM_001159513	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.035000	0.557214	-98(GTATTTAAAAAG,-,0.00)
mm_116205.1	chr13	32703402	32703602	-	1	NA	NA	NA	78277	NM_001166030	238564	Mm.60041	NM_001166030	ENSMUSG00000044951	Mylk4	EG238564	myosin light chain kinase family, member 4	protein-coding	0.010000	0.407960	6(CCCCCTTTAAGC,-,0.00)
mm_32475.1	chr4	107812156	107812356	+	1	NA	NA	NA	9997	NM_001080926	16975	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0.000000	0.442786	
mm_144828.1	chr18	36348823	36349023	+	1	NA	NA	NA	299	NM_001081365	66060	Mm.272527	NM_001081365	ENSMUSG00000046727	Cystm1	0610010O12Rik	cysteine-rich transmembrane module containing 1	protein-coding	0.100000	0.756219	
mm_65364.1	chr7	25068800	25069000	-	1	NA	NA	NA	3469	NM_008168	14809	Mm.2879	NM_008168	ENSMUSG00000003378	Grik5	GluK5|GluRgamma2|KA2	glutamate receptor, ionotropic, kainate 5 (gamma 2)	protein-coding	0.010000	0.577114	
mm_118440.1	chr14	8095694	8095894	+	1	NA	NA	NA	-2419	NM_145458	218699	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|MONaKA	PX domain containing serine/threonine kinase	protein-coding	0.030000	0.497512	
mm_145317.1	chr18	54426920	54427120	+	1	NA	NA	NA	4725	NR_040338	77433	Mm.159919	NR_040338		Redrum	9430076G02Rik	Redrum, erythroid developmental long intergenic non-protein coding transcript	ncRNA	0.025000	0.383085	
mm_166884.1	chr7	27166446	27166646	-	1	NA	NA	NA	256	NM_053208	112406	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0.145000	0.791045	
mm_87339.1	chr10	43479068	43479268	+	1	NA	NA	NA	28	NM_199028	331623	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.120000	0.726368	
mm_39434.1	chr5	16553744	16553944	+	1	NA	NA	NA	-57	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.030000	0.472637	
mm_155062.1	chrX	42502368	42502568	+	1	NA	NA	NA	-97	NM_011364	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	0.010000	0.467662	
mm_169666.1	chr15	60614455	60614655	-	1	NA	NA	NA	-208410	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0.025000	0.507463	-30(GCCTATATAAGC,-,0.00)
mm_9155.1	chr1	170958806	170959006	-	1	NA	NA	NA	17165	NM_001077189	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.020000	0.487562	
mm_135072.1	chr16	34262736	34262936	-	1	NA	NA	NA	251191	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.020000	0.542289	
mm_18879.1	chr2	76360332	76360532	-	1	NA	NA	NA	21	NM_009989	13067	Mm.4872	NM_009989	ENSMUSG00000056436	Cyct	T-Cc	cytochrome c, testis	protein-coding	0.030000	0.611940	18(GCCTTTAAGAGG,-,0.00),19(CCTTTAAGAGGA,+,0.00)
mm_62089.1	chr7	93079848	93080048	+	1	NA	NA	NA	69	NM_021427	58238	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.115000	0.741294	
mm_115110.1	chr13	103774573	103774773	+	1	NA	NA	NA	-10091	NM_172592	218543	Mm.458176	NM_172592	ENSMUSG00000032621	Srek1	8430401B01|AI450757|AI462342|SRrp508|SRrp86|Sfrs12|Srsf12	splicing regulatory glutamine/lysine-rich protein 1	protein-coding	0.125000	0.726368	
mm_10370.1	chr2	11723217	11723417	+	1	NA	NA	NA	17605	NM_001271500	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.005000	0.412935	
mm_30813.1	chr4	21727659	21727859	+	1	NA	NA	NA	58	NM_001290420	51813	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	0.095000	0.641791	
mm_171948.1	chr5	76233000	76233200	-	1	NA	NA	NA	49220	NM_011626	21982	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0.025000	0.492537	
mm_70872.1	chr8	25068392	25068592	+	1	NA	NA	NA	-29530	NM_001081187	330723	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0.025000	0.502488	
mm_8733.1	chr1	160153478	160153678	-	1	NA	NA	NA	-3	NM_177839	329278	Mm.90140	NM_177839	ENSMUSG00000026725	Tnn	Tnw|tenascin-W	tenascin N	protein-coding	0.020000	0.557214	
mm_157597.1	chrX	53266212	53266412	-	1	NA	NA	NA	3493	NM_030167	78755	Mm.28559	NM_030167	ENSMUSG00000036022	Fam122b	4632404H22Rik|AI256344|SPACIA2	family with sequence similarity 122, member B	protein-coding	0.025000	0.532338	
mm_149598.1	chr19	16317965	16318165	+	1	NA	NA	NA	-3061	NR_105832	102465218		NR_105832	ENSMUSG00000098718	Mir496b	Gm28028|mmu-mir-496b	microRNA 496b	ncRNA	0.005000	0.452736	
mm_9224.1	chr1	171234614	171234814	-	1	NA	NA	NA	-365	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.005000	0.422886	65(GGGTATATAAAG,-,0.00)
mm_171181.1	chr3	36571602	36571802	-	1	NA	NA	NA	294	NM_009828	12428	Mm.4189	NM_009828	ENSMUSG00000027715	Ccna2	AA408589|Ccn-1|Ccn1|Ccna|CycA2|Cyca	cyclin A2	protein-coding	0.115000	0.686567	
mm_83074.1	chr9	37657180	37657380	-	1	NA	NA	NA	32	NM_025289	21376	Mm.28689	NM_025289	ENSMUSG00000011114	Tbrg1	AA408552|AA409675|Niam|Tb-5|mFLJ00213	transforming growth factor beta regulated gene 1	protein-coding	0.075000	0.611940	
mm_116114.1	chr13	28950144	28950344	-	1	NA	NA	NA	3438	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.020000	0.348259	
mm_42400.1	chr5	114968666	114968866	+	1	NA	NA	NA	2296	NM_009327	21405	Mm.332607	NM_009327	ENSMUSG00000029556	Hnf1a	AI323641|HNF1|HNF1-alpha|HNF1[a]|Hnf-1|Hnf1alpha|LFB1|Tcf-1|Tcf1	HNF1 homeobox A	protein-coding	0.025000	0.492537	
mm_109506.1	chr12	111452154	111452354	+	1	NA	NA	NA	9593	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.000000	0.452736	
mm_107800.1	chr12	64917896	64918096	+	1	NA	NA	NA	85	NM_001025605	217648	Mm.341586	NM_001025605	ENSMUSG00000047227	Gm527	-	predicted gene 527	protein-coding	0.155000	0.805970	
mm_13025.1	chr2	91042848	91043048	+	1	NA	NA	NA	7321	NM_009023	19400	Mm.1272	NM_009023	ENSMUSG00000002104	Rapsn	43kDa|Nraps|Raps|rapsyn	receptor-associated protein of the synapse	protein-coding	0.035000	0.587065	
mm_42023.1	chr5	108269570	108269770	+	1	NA	NA	NA	773	NM_026106	13486	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0.045000	0.462687	
mm_95762.1	chr11	54907024	54907224	+	1	NA	NA	NA	4270	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.020000	0.502488	76(TTCCTTTTAAGC,-,0.00),78(CCTTTTAAGCAG,+,0.00)
mm_17704.1	chr2	32384604	32384804	-	1	NA	NA	NA	-2789	NM_198001	73737	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0.005000	0.532338	
mm_28200.1	chr3	88276811	88277011	-	1	NA	NA	NA	19927	NM_029801	76927	Mm.273330	NM_029801	ENSMUSG00000010538	Tsacc	1700021C14Rik|SIP	TSSK6 activating co-chaperone	protein-coding	0.010000	0.462687	
mm_37101.1	chr4	116627395	116627595	-	1	NA	NA	NA	2	NM_001081475	50927	Mm.257181	NM_016777	ENSMUSG00000028693	Nasp	5033430J04Rik|AI131596|AI317140|D4Ertd767e|Epcs32|Nasp-T	nuclear autoantigenic sperm protein (histone-binding)	protein-coding	0.040000	0.572139	-34(TGGTATATAAGA,-,0.00)
mm_76274.1	chr8	84147677	84147877	-	1	NA	NA	NA	-24	NM_145970	212139	Mm.41424	NM_145970	ENSMUSG00000036686	Cc2d1a	BC016188|Freud-1|Tape	coiled-coil and C2 domain containing 1A	protein-coding	0.065000	0.651741	
mm_157393.1	chrX	38406650	38406850	-	1	NA	NA	NA	49710	NM_010685	16784	Mm.486	NM_010685	ENSMUSG00000016534	Lamp2	CD107b|LGP-B|Lamp II|Lamp-2|Lamp-2a|Lamp-2b|Lamp-2c|Mac3	lysosomal-associated membrane protein 2	protein-coding	0.000000	0.353234	1(GCTTATATGGTA,+,0.00)
mm_163586.1	chr13	37895323	37895523	+	1	NA	NA	NA	6552	NM_001177869	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.020000	0.492537	-32(CCTTAAATAGCA,+,0.00)
mm_47087.1	chr5	117287506	117287706	-	1	NA	NA	NA	-42	NM_018858	23980	Mm.195898	NM_018858	ENSMUSG00000032959	Pebp1	HCNP|Pbp|Pbp1|Pbpr|Rkip	phosphatidylethanolamine binding protein 1	protein-coding	0.115000	0.686567	
mm_163801.1	chr14	19415609	19415809	+	1	NA	NA	NA	186878	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.353234	
mm_25504.1	chr3	109556842	109557042	+	1	NA	NA	NA	-17065	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.000000	0.308458	
mm_151359.1	chr19	55910490	55910690	+	1	NA	NA	NA	15269	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.040000	0.547264	
mm_112161.1	chr12	113330334	113330534	-	1	NA	NA	NA	144531	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.010000	0.557214	
mm_110409.1	chr12	45085981	45086181	-	1	NA	NA	NA	-11598	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.000000	0.497512	
mm_89332.1	chr10	87933166	87933366	+	1	NA	NA	NA	-33405	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.000000	0.457711	
mm_143583.1	chr17	74323825	74324025	-	1	NA	NA	NA	19	NM_024428	66310	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0.005000	0.323383	42(CCCTTTCTAGTC,+,0.00)
mm_11071.1	chr2	27677000	27677200	+	1	NA	NA	NA	-101	NM_011305	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.195000	0.870647	
mm_80811.1	chr9	96478693	96478893	+	1	NA	NA	NA	-118	NM_001311135	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.065000	0.587065	
mm_62380.1	chr7	100786754	100786954	+	1	NA	NA	NA	76559	NM_177073	320100	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.005000	0.407960	
mm_131456.1	chr16	16870896	16871096	+	1	NA	NA	NA	260	NM_011624	21976	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding	0.105000	0.701493	
mm_60853.1	chr7	45833228	45833428	+	1	NA	NA	NA	-2539	NM_153419	101612	Mm.274847	NM_153419	ENSMUSG00000053801	Grwd1	A301|AI504353|Grwd|Wdr28	glutamate-rich WD repeat containing 1	protein-coding	0.125000	0.751244	
mm_53836.1	chr6	148212194	148212394	+	1	NA	NA	NA	6	NR_015615	320737	Mm.137858	NR_015615		4732416N19Rik	-	RIKEN cDNA 4732416N19 gene	ncRNA	0.065000	0.577114	
mm_141361.1	chr17	28801512	28801712	-	1	NA	NA	NA	486	NM_001081315	268936	Mm.291877	NM_199061	ENSMUSG00000063952	Brpf3	AI413466|AW493400|mKIAA1286	bromodomain and PHD finger containing, 3	protein-coding	0.100000	0.711443	
mm_43579.1	chr5	137746482	137746682	+	1	NA	NA	NA	613	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.020000	0.587065	
mm_162305.1	chr1	36698396	36698596	+	1	NA	NA	NA	7009	NM_009942	12859	Mm.180182	NM_009942	ENSMUSG00000061518	Cox5b	-	cytochrome c oxidase subunit Vb	protein-coding	0.015000	0.487562	
mm_23828.1	chr3	81037119	81037319	+	1	NA	NA	NA	803	NM_019971	54635	Mm.331089	NM_019971	ENSMUSG00000028019	Pdgfc	1110064L01Rik|AI647969|PDGF-C	platelet-derived growth factor, C polypeptide	protein-coding	0.030000	0.517413	
mm_135686.1	chr16	52424829	52425029	-	1	NA	NA	NA	28152	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.010000	0.358209	
mm_115821.1	chr13	20091103	20091303	-	1	NA	NA	NA	696	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.090000	0.686567	
mm_163748.1	chr13	119755851	119756051	-	1	NA	NA	NA	-69	NM_175538	245269	Mm.403943	NM_175538	ENSMUSG00000095930	Nim1k	E130304F04Rik|Nim1	NIM1 serine/threonine protein kinase	protein-coding	0.050000	0.646766	
mm_65260.1	chr7	19904611	19904811	-	1	NA	NA	NA	16432	NM_027514	52118	Mm.227506	NM_027514	ENSMUSG00000040511	Pvr	3830421F03Rik|CD155|D7Ertd458e|HVED|PVS|Taa1|Tage4|mE4|necl-5	poliovirus receptor	protein-coding	0.005000	0.467662	-27(CTCTTTATAAGT,-,0.00)
mm_75657.1	chr8	65129517	65129717	-	1	NA	NA	NA	-80	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA	0.020000	0.447761	
mm_117021.1	chr13	58182134	58182334	-	1	NA	NA	NA	24585	NM_198004	75731	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	0.010000	0.368159	
mm_13095.1	chr2	91256753	91256953	+	1	NA	NA	NA	40	NM_001289678	80708	Mm.236650	NM_028733	ENSMUSG00000027257	Pacsin3	4921507A02Rik|6330413E15Rik|AW413130	protein kinase C and casein kinase substrate in neurons 3	protein-coding	0.090000	0.751244	
mm_70998.1	chr8	29719452	29719652	+	1	NA	NA	NA	-499916	NM_001347498	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 netrin receptor D	protein-coding	0.020000	0.452736	
mm_17985.1	chr2	37810905	37811105	-	1	NA	NA	NA	34756	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.005000	0.507463	
mm_148264.1	chr18	80968753	80968953	-	1	NA	NA	NA	17725	NM_178280	20689	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	sal-like 3 (Drosophila)	protein-coding	0.020000	0.323383	-7(TTTTTTAAAGCG,+,0.00)
mm_113370.1	chr13	33003068	33003268	+	1	NA	NA	NA	-1373	NM_009256	20723	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0.010000	0.422886	
mm_165816.1	chr3	146220929	146221129	+	1	NA	NA	NA	68	NM_022983	65086	Mm.155520	NM_022983	ENSMUSG00000036832	Lpar3	Edg7|lpA3	lysophosphatidic acid receptor 3	protein-coding	0.140000	0.761194	
mm_51645.1	chr6	86028601	86028801	+	1	NA	NA	NA	20	NM_001271860	11519	Mm.104155	NM_013458	ENSMUSG00000030000	Add2	2900072M03Rik|add97	adducin 2 (beta)	protein-coding	0.085000	0.701493	
mm_32385.1	chr4	106578166	106578366	+	1	NA	NA	NA	17228	NM_053272	74754	Mm.133370	NM_053272	ENSMUSG00000034926	Dhcr24	2310076D10Rik|5830417J06Rik|mKIAA0018	24-dehydrocholesterol reductase	protein-coding	0.025000	0.532338	
mm_10157.1	chr2	4399147	4399347	+	1	NA	NA	NA	-1729	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.000000	0.373134	
mm_65830.1	chr7	29179289	29179489	-	1	NA	NA	NA	1284	NM_026545	57296	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	0.020000	0.487562	
mm_144013.1	chr17	88598935	88599135	-	1	NA	NA	NA	-27520	NM_029858	77057	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.015000	0.532338	
mm_70913.1	chr8	25719977	25720177	+	1	NA	NA	NA	29	NR_121643	71910	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	0.115000	0.706468	
mm_88046.1	chr10	67539157	67539357	+	1	NA	NA	NA	1327	NM_001347458	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.040000	0.567164	
mm_135018.1	chr16	32487595	32487795	-	1	NA	NA	NA	184	NM_145932	106407	Mm.476915	NM_145932	ENSMUSG00000035699	Slc51a	AV001382|AW261577|D630035O19Rik|OSTalpha|Osta	solute carrier family 51, alpha subunit	protein-coding	0.025000	0.542289	
mm_45770.1	chr5	86926429	86926629	-	1	NA	NA	NA	-26	NM_152811	71773	Mm.26741	NM_152811	ENSMUSG00000035836	Ugt2b1	1300012D20Rik	UDP glucuronosyltransferase 2 family, polypeptide B1	protein-coding	0.000000	0.348259	
mm_23292.1	chr3	52103260	52103460	+	1	NA	NA	NA	1646	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.050000	0.582090	
mm_21928.1	chr2	166996171	166996371	-	1	NA	NA	NA	28	NM_011490	20853	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen (RNA binding protein) homolog 1 (Drosophila)	protein-coding	0.115000	0.761194	
mm_73352.1	chr8	105438705	105438905	+	1	NA	NA	NA	11165	NM_001170789	270091	Mm.212709	NM_001033371	ENSMUSG00000054320	Lrrc36	BC036564	leucine rich repeat containing 36	protein-coding	0.000000	0.313433	
mm_139091.1	chr17	46833647	46833847	+	1	NA	NA	NA	-2334	NM_001100452	210982	Mm.37642	NM_001100452	ENSMUSG00000036568	Gltscr1l	mKIAA0240	GLTSCR1-like	protein-coding	0.000000	0.517413	-32(TGCCTTAAAAAG,-,0.00),-30(CCTTAAAAAGTA,+,0.00)
mm_169380.1	chr14	39763577	39763777	-	1	NA	NA	NA	108014	NR_045936	73591	Mm.65499	NR_045936	ENSMUSG00000101261	1700109I08Rik	-	RIKEN cDNA 1700109I08 gene	ncRNA	0.065000	0.631841	
mm_132952.1	chr16	49913486	49913686	+	1	NA	NA	NA	57932	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.025000	0.457711	56(CCTTTTCTGCCC,+,0.00)
mm_90090.1	chr10	116914278	116914478	+	1	NA	NA	NA	-17499	NM_001033333	237558	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	0.030000	0.432836	-16(CCTTTAAAACGC,+,0.00)
mm_75527.1	chr8	57310172	57310372	-	1	NA	NA	NA	10587	NR_110474	102636514		NR_110474	ENSMUSG00000100510	Uph	-	upperhand	ncRNA	0.005000	0.427861	
mm_14135.1	chr2	126035690	126035890	+	1	NA	NA	NA	1132	NM_008008	14178	Mm.330557	NM_008008	ENSMUSG00000027208	Fgf7	Kgf	fibroblast growth factor 7	protein-coding	0.045000	0.507463	
mm_123416.1	chr14	64174583	64174783	-	1	NA	NA	NA	70360	NM_028525	73382	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	0.005000	0.487562	-37(CCTCATAGAGAC,+,0.00),52(GAGTTTAAAGAG,-,0.00)
mm_87652.1	chr10	58446642	58446842	+	1	NA	NA	NA	-110	NM_011240	19386	Mm.431695	NM_011240	ENSMUSG00000003226	Ranbp2	A430087B05Rik|AI256741|NUP358	RAN binding protein 2	protein-coding	0.105000	0.592040	
mm_42803.1	chr5	121715029	121715229	+	1	NA	NA	NA	3520	NM_009125	20239	Mm.260900	NM_009125	ENSMUSG00000042605	Atxn2	9630045M23Rik|ATX2|AW544490|Sca2	ataxin 2	protein-coding	0.025000	0.412935	-39(CCTTTAATCGGG,+,0.00)
mm_90966.1	chr10	13388665	13388865	-	1	NA	NA	NA	205	NM_001195066	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.035000	0.582090	
mm_75314.1	chr8	41239350	41239550	-	1	NA	NA	NA	-309	NM_023662	18536	Mm.117896	NM_023662	ENSMUSG00000031592	Pcm1	2600002H09Rik|9430077F19Rik|C030044G17Rik	pericentriolar material 1	protein-coding	0.030000	0.502488	54(GGGTTTATAAGT,-,0.00)
mm_61156.1	chr7	58697227	58697427	+	1	NA	NA	NA	39125	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.005000	0.482587	
mm_58320.1	chr6	146470619	146470819	-	1	NA	NA	NA	31504	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.000000	0.388060	
mm_114706.1	chr13	83524759	83524959	+	1	NA	NA	NA	116	NM_001347580	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.105000	0.626866	
mm_16215.1	chr2	173073147	173073347	+	1	NA	NA	NA	46278	NM_001081387	664799	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris|OTTMUSG00000016680	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.015000	0.527363	
mm_132852.1	chr16	48218430	48218630	+	1	NA	NA	NA	-65205	NM_028610	73693	Mm.35597	NM_028610	ENSMUSG00000058550	Dppa4	2410091M23Rik|C76608|ECAT15-1	developmental pluripotency associated 4	protein-coding	0.010000	0.393035	
mm_66438.1	chr7	44815818	44816018	-	1	NA	NA	NA	-170	NM_053074	18226	Mm.2565	NM_053074	ENSMUSG00000109511	Nup62	D7Ertd649e|Nupc1|p62	nucleoporin 62	protein-coding	0.075000	0.646766	
mm_159261.1	chr2	155074356	155074556	-	1	NA	NA	NA	41	NM_016661	269378	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	0.075000	0.577114	
mm_67248.1	chr7	75309203	75309403	-	1	NA	NA	NA	-41	NM_153579	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.035000	0.552239	
mm_20608.1	chr2	131562425	131562625	-	1	NA	NA	NA	-240	NM_013460	11550	Mm.389380	NM_013460	ENSMUSG00000027335	Adra1d	Adra-1|Adra1|Adra1a|Gpcr8|Spr8|[a]1d|alpha1D-AR	adrenergic receptor, alpha 1d	protein-coding	0.125000	0.791045	
mm_160631.1	chr9	107399880	107400080	+	1	NA	NA	NA	100	NM_020263	56808	Mm.273084	NM_020263	ENSMUSG00000010066	Cacna2d2	Cacna2d|a2d2|du|mKIAA0558|td|torpid	calcium channel, voltage-dependent, alpha 2/delta subunit 2	protein-coding	0.145000	0.776119	
mm_130407.1	chr15	97976707	97976907	-	1	NA	NA	NA	12578	NM_001252153	380967	Mm.196630	NM_201359	ENSMUSG00000052369	Tmem106c	AI046681|BC046621|D15Ertd405e	transmembrane protein 106C	protein-coding	0.040000	0.582090	
mm_120005.1	chr14	55650084	55650284	+	1	NA	NA	NA	0	NM_001253888	71099	Mm.171300	NM_027673	ENSMUSG00000007591	Tssk4	1700020B19Rik|4933424F08Rik|TSK-4|TSSK-4	testis-specific serine kinase 4	protein-coding	0.005000	0.472637	
mm_125411.1	chr15	41788672	41788872	+	1	NA	NA	NA	-262	NM_001130165	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.080000	0.621891	
mm_140967.1	chr17	24670590	24670790	-	1	NA	NA	NA	938	NM_183149	213753	Mm.219581	NM_183149	ENSMUSG00000041130	Zfp598	BC023040|Ntrap|Znf598	zinc finger protein 598	protein-coding	0.010000	0.492537	
mm_143005.1	chr17	56425589	56425789	-	1	NA	NA	NA	-6780	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0.155000	0.756219	
mm_25137.1	chr3	102491241	102491441	+	1	NA	NA	NA	21422	NM_013609	18049	Mm.1259	NM_013609	ENSMUSG00000027859	Ngf	Ngfb	nerve growth factor	protein-coding	0.000000	0.452736	
mm_164910.1	chr18	72443166	72443366	-	1	NA	NA	NA	-92197	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.000000	0.293532	
mm_146092.1	chr18	73754061	73754261	+	1	NA	NA	NA	318	NM_053255	114615	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	0.065000	0.676617	
mm_58617.1	chr7	5065109	5065309	+	1	NA	NA	NA	3066	NM_001205231	22185	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.005000	0.283582	
mm_151149.1	chr19	53140465	53140665	+	1	NA	NA	NA	122	NM_001164101	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.055000	0.567164	-79(CCTTTAAGAGAG,+,0.00)
mm_126482.1	chr15	81586362	81586562	+	1	NA	NA	NA	248	NM_177821	328572	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.070000	0.661692	
mm_95517.1	chr11	52098764	52098964	+	1	NA	NA	NA	40	NM_019411	19052	Mm.260288	NM_019411	ENSMUSG00000020349	Ppp2ca	PP2A|R75353	protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform	protein-coding	0.140000	0.766169	
mm_77516.1	chr8	122894507	122894707	-	1	NA	NA	NA	46233	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.005000	0.447761	
mm_136014.1	chr16	76022177	76022377	-	1	NA	NA	NA	-100336	NR_040575	78215	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.015000	0.467662	
mm_53203.1	chr6	125685594	125685794	+	1	NA	NA	NA	-4725	NM_153589	243634	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.000000	0.472637	
mm_108849.1	chr12	98275948	98276148	+	1	NA	NA	NA	7413	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.005000	0.383085	
mm_24814.1	chr3	95622552	95622752	+	1	NA	NA	NA	-2328	NM_019561	56205	Mm.241365	NM_019561	ENSMUSG00000038619	Ensa	1700020C18Rik|2610007F17Rik|AI451924	endosulfine alpha	protein-coding	0.055000	0.636816	
mm_139315.1	chr17	48359809	48360009	+	1	NA	NA	NA	-7	NM_001289457	71326	Mm.90177	NM_027763	ENSMUSG00000023993	Treml1	5430401J17Rik|TLT-1	triggering receptor expressed on myeloid cells-like 1	protein-coding	0.020000	0.582090	
mm_13657.1	chr2	114055100	114055300	+	1	NA	NA	NA	804	NR_028422	100303644	Mm.330469	NR_028422	ENSMUSG00000092397	C130080G10Rik	-	RIKEN cDNA C130080G10 gene	ncRNA	0.030000	0.497512	
mm_39719.1	chr5	28124468	28124668	+	1	NA	NA	NA	-41128	NM_010134	13799	Mm.4298	NM_010134	ENSMUSG00000039095	En2	BB131122|En-2	engrailed 2	protein-coding	0.035000	0.626866	
mm_75898.1	chr8	71085661	71085861	-	1	NA	NA	NA	-54608	NM_001324526	665858	Mm.411658	NM_001324526		Gm7827	EG665858	predicted gene 7827	protein-coding	0.010000	0.517413	
mm_96342.1	chr11	66911962	66912162	+	1	NA	NA	NA	71	NM_178656	193003	Mm.440256	NM_178656	ENSMUSG00000048070	Pirt	A530088H08Rik	phosphoinositide-interacting regulator of transient receptor potential channels	protein-coding	0.040000	0.592040	
mm_108887.1	chr12	99979821	99980021	+	1	NA	NA	NA	15422	NM_001164427	217826	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.005000	0.353234	
mm_84731.1	chr9	75052173	75052373	-	1	NA	NA	NA	14541	NM_021548	59046	Mm.247837	NM_021548	ENSMUSG00000007656	Arpp19	19kDa|2700024H10Rik|ARPP-19|AW559096|Arpp12	cAMP-regulated phosphoprotein 19	protein-coding	0.000000	0.353234	-64(CCTTAAAAAATC,+,0.00)
mm_76263.1	chr8	84012046	84012246	-	1	NA	NA	NA	-426	NM_001291292	70134	Mm.41017	NM_001291292	ENSMUSG00000074217	2210011C24Rik	-	RIKEN cDNA 2210011C24 gene	protein-coding	0.055000	0.592040	
mm_40400.1	chr5	52834099	52834299	+	1	NA	NA	NA	64	NM_024213	52206	Mm.272568	NM_024213	ENSMUSG00000029176	Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding	0.100000	0.681592	
mm_121086.1	chr14	99294659	99294859	+	1	NA	NA	NA	-3932	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.015000	0.427861	
mm_156417.1	chrX	140797208	140797408	+	1	NA	NA	NA	16125	NM_031381	83555	Mm.193025	NM_031381	ENSMUSG00000042386	Tex13b	4933403J23Rik|Tex13	testis expressed 13B	protein-coding	0.065000	0.577114	
mm_22398.1	chr2	181236136	181236336	-	1	NA	NA	NA	5791	NM_183162	229003	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.025000	0.572139	
mm_126034.1	chr15	76879139	76879339	+	1	NA	NA	NA	-37	NM_145916	223669	Mm.38948	NM_145916	ENSMUSG00000033669	Zfp7	KRAB20|KRAB7|Krox-2|Zfp-7|Zfp65|Zfp80|Zfp86-rs1|mszf73-2	zinc finger protein 7	protein-coding	0.065000	0.656716	-72(CCCTTTATGGGC,+,0.00)
mm_65684.1	chr7	28350445	28350645	-	1	NA	NA	NA	-144	NM_013647	20055	Mm.702	NM_013647	ENSMUSG00000037563	Rps16	AA420385|AI317031	ribosomal protein S16	protein-coding	0.070000	0.616915	
mm_172283.1	chr6	91428707	91428907	+	1	NA	NA	NA	12047	NR_045980	75787	Mm.30842	NR_045980	ENSMUSG00000097693	4930471M09Rik	4930427C17Rik	RIKEN cDNA 4930471M09 gene	ncRNA	0.025000	0.472637	
mm_21209.1	chr2	155652703	155652903	-	1	NA	NA	NA	29923	NR_030757	735275		NR_030757	ENSMUSG00000076312	Mir499	Mirn499|mir-499|mmu-mir-499	microRNA 499	ncRNA	0.015000	0.527363	
mm_100631.1	chr11	121708581	121708781	+	1	NA	NA	NA	6254	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.005000	0.512438	
mm_160236.1	chr7	103840376	103840576	-	1	NA	NA	NA	45	NM_001127686	436003	Mm.475617	NM_001127686	ENSMUSG00000078621	Hbb-bh2	EG436003|Gm5736	hemoglobin beta, bh2	protein-coding	0.010000	0.512438	-36(GGGCATAAAGGG,-,0.00)
mm_32006.1	chr4	94627155	94627355	+	1	NA	NA	NA	12764	NM_026319	67694	Mm.240619	NM_026319	ENSMUSG00000028576	Ift74	1700029H06Rik|Ccdc2|Cmg1|b2b796Clo	intraflagellar transport 74	protein-coding	0.000000	0.308458	
mm_46182.1	chr5	97392221	97392421	-	1	NA	NA	NA	9	NM_001033191	97243	Mm.11746	NM_001033191	ENSMUSG00000046000	Naa11	Ard1b|Ard2|C80008	N(alpha)-acetyltransferase 11, NatA catalytic subunit	protein-coding	0.080000	0.661692	
mm_22607.1	chr3	14506560	14506760	+	1	NA	NA	NA	25961	NM_080852	140918	Mm.215250	NM_080852	ENSMUSG00000039710	Slc7a12	Asc-2|XAT1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 12	protein-coding	0.005000	0.288557	
mm_121697.1	chr14	14101350	14101550	-	1	NA	NA	NA	19454	NM_025550	66413	Mm.27591	NM_025550	ENSMUSG00000021737	Psmd6	2400006A19Rik	proteasome (prosome, macropain) 26S subunit, non-ATPase, 6	protein-coding	0.035000	0.537313	
mm_169400.1	chr14	48079710	48079910	-	1	NA	NA	NA	-41059	NM_033602	93834	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	0.060000	0.537313	
mm_7668.1	chr1	128588518	128588718	-	1	NA	NA	NA	3681	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.000000	0.348259	
mm_139132.1	chr17	47505120	47505320	+	1	NA	NA	NA	169	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.045000	0.577114	
mm_51392.1	chr6	78370785	78370985	+	1	NA	NA	NA	0	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.005000	0.457711	
mm_39083.1	chr4	154636027	154636227	-	1	NA	NA	NA	240	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	0.090000	0.706468	
mm_82495.1	chr9	18674694	18674894	-	1	NA	NA	NA	80839	NM_146606	18322	Mm.246530	NM_146606	ENSMUSG00000054141	Olfr24	MOR132-1|MTPCR51	olfactory receptor 24	protein-coding	0.000000	0.407960	
mm_126066.1	chr15	77084289	77084489	+	1	NA	NA	NA	-9	NR_108037	74303	Mm.444304	NR_108037	ENSMUSG00000097267	1700109K24Rik	4933425G21Rik	RIKEN cDNA 1700109K24 gene	ncRNA	0.000000	0.452736	
mm_93831.1	chr10	121585846	121586046	-	1	NA	NA	NA	848	NM_019786	56480	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.020000	0.412935	5(CTTTTTATATTG,+,0.00)
mm_152549.1	chr19	11387647	11387847	-	1	NA	NA	NA	12259	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.010000	0.373134	
mm_50901.1	chr6	57581212	57581412	+	1	NA	NA	NA	320	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.015000	0.572139	
mm_153915.1	chr19	47266026	47266226	-	1	NA	NA	NA	7463	NR_105961	102466782		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.020000	0.437811	
mm_95568.1	chr11	52396332	52396532	+	1	NA	NA	NA	4	NM_153117	213673	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.115000	0.651741	
mm_11488.1	chr2	32450353	32450553	+	1	NA	NA	NA	-4	NM_194335	71254	Mm.102341	NM_194335	ENSMUSG00000039164	Naif1	2310007O20Rik|4933440H19Rik	nuclear apoptosis inducing factor 1	protein-coding	0.010000	0.467662	
mm_37540.1	chr4	125122365	125122565	-	1	NA	NA	NA	5416	NM_153159	230738	Mm.402	NM_153159	ENSMUSG00000042677	Zc3h12a	BC036563|MCPIP|MCPIP-1|Mcpip1|Reg1	zinc finger CCCH type containing 12A	protein-coding	0.005000	0.557214	
mm_6561.1	chr1	75141636	75141836	-	1	NA	NA	NA	632	NM_026977	69171	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0.120000	0.681592	-34(GCTTATAAACGC,+,0.00)
mm_154405.1	chrM	14452	14652	+	1	NA	NA	NA	NA	NA									0.015000	0.407960	-29(GCATTTATAGGC,+,0.00)
mm_54028.1	chr6	11907352	11907552	-	1	NA	NA	NA	-6	NM_010886	17992	Mm.415865	NM_010886	ENSMUSG00000029632	Ndufa4	MLRQ	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4	protein-coding	0.050000	0.597015	
mm_66046.1	chr7	30671507	30671707	-	1	NA	NA	NA	-2	NR_027848	74927	Mm.87326	NM_183108	ENSMUSG00000049761	Pmis2	1700071L20Rik|4930479M11Rik	Pmis2, sperm specific protein	ncRNA	0.035000	0.507463	
mm_4544.1	chr1	176997748	176997948	+	1	NA	NA	NA	-161715	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0.030000	0.636816	
mm_132152.1	chr16	32114573	32114773	+	1	NA	NA	NA	14871	NM_025892	66994	Mm.22990	NM_025892	ENSMUSG00000035790	Cep19	1500031L02Rik|AI428934|AL022620	centrosomal protein 19	protein-coding	0.020000	0.532338	
mm_161123.1	chr12	110561315	110561515	+	1	NA	NA	NA	-29959	NR_033340	319786	Mm.129691	NR_033340		B930059L03Rik	-	RIKEN cDNA B930059L03 gene	ncRNA	0.015000	0.457711	
mm_163802.1	chr14	19415680	19415880	+	1	NA	NA	NA	186807	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.358209	
mm_41302.1	chr5	90466069	90466269	+	1	NA	NA	NA	5299	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.005000	0.288557	32(GTTTATAAAGAC,+,0.00)
mm_133801.1	chr16	95297874	95298074	+	1	NA	NA	NA	40416	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.015000	0.452736	
mm_20277.1	chr2	126876138	126876338	-	1	NA	NA	NA	23	NM_001164325	58800	Mm.244705	NM_021450	ENSMUSG00000027365	Trpm7	2310022G15Rik|4833414K03Rik|5033407O22Rik|CHAK|CHAK1|LTrpC-7|Ltpr7|Ltrpc7|TRPPLIK	transient receptor potential cation channel, subfamily M, member 7	protein-coding	0.155000	0.726368	
mm_110992.1	chr12	77238551	77238751	-	1	NA	NA	NA	-88	NR_045554	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.120000	0.761194	
mm_3742.1	chr1	155447375	155447575	+	1	NA	NA	NA	-30031	NM_011273	19775	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.010000	0.472637	
mm_143316.1	chr17	66187202	66187402	-	1	NA	NA	NA	63782	NM_001003919	320209	Mm.259605	NM_001003919	ENSMUSG00000035842	Ddx11	4732462I11Rik|CHL1|CHLR1|KRG2|essa15a	DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11	protein-coding	0.000000	0.412935	
mm_52436.1	chr6	113604659	113604859	+	1	NA	NA	NA	-13	NM_133937	101314	Mm.485793	NM_133937	ENSMUSG00000033940	Brk1	6720456B07Rik|AW011779	BRICK1, SCAR/WAVE actin-nucleating complex subunit	protein-coding	0.095000	0.666667	
mm_106993.1	chr12	11266040	11266240	+	1	NA	NA	NA	254	NM_025695	67241	Mm.173953	NM_025695	ENSMUSG00000020608	Smc6	2810489L22Rik|3830418C19Rik|AA990493|AU018782|AW742439|SMC-6|Smc6l1|mKIAA4103	structural maintenance of chromosomes 6	protein-coding	0.140000	0.776119	
mm_21767.1	chr2	164844545	164844745	-	1	NA	NA	NA	10872	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.040000	0.597015	
mm_112796.1	chr13	20428965	20429165	+	1	NA	NA	NA	-43925	NM_198093	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.005000	0.353234	
mm_159540.1	chr4	88683745	88683945	-	1	NA	NA	NA	-66	NM_010503	15965	Mm.14091	NM_010503	ENSMUSG00000078354	Ifna2	Ifa2	interferon alpha 2	protein-coding	0.005000	0.452736	-35(CCCTATTTAAGA,-,0.00)
mm_88736.1	chr10	80261380	80261580	+	1	NA	NA	NA	-468	NM_010255	14431	Mm.7329	NM_010255	ENSMUSG00000020150	Gamt	AA571402|Spintz1	guanidinoacetate methyltransferase	protein-coding	0.035000	0.597015	
mm_101326.1	chr11	22960985	22961185	-	1	NA	NA	NA	-10920	NM_011663	22183	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.010000	0.348259	
mm_46262.1	chr5	99728769	99728969	-	1	NA	NA	NA	191	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.105000	0.726368	
mm_69062.1	chr7	126897419	126897619	-	1	NA	NA	NA	759	NM_026827	68742	Mm.248646	NM_026827	ENSMUSG00000060538	Tmem219	1110032O16Rik|2900045G02Rik|IGFBP-3R	transmembrane protein 219	protein-coding	0.015000	0.452736	
mm_88247.1	chr10	72671261	72671461	+	1	NA	NA	NA	16515	NM_001293683	52696	Mm.62876	NM_025635	ENSMUSG00000019923	Zwint	2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1	ZW10 interactor	protein-coding	0.005000	0.432836	
mm_83240.1	chr9	42399644	42399844	-	1	NA	NA	NA	185	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.035000	0.412935	
mm_82526.1	chr9	20645184	20645384	-	1	NA	NA	NA	460	NM_001310746	66177	Mm.390165	NM_025401	ENSMUSG00000084786	Ubl5	1110030M22Rik|beacon	ubiquitin-like 5	protein-coding	0.045000	0.517413	
mm_62486.1	chr7	101896302	101896502	+	1	NA	NA	NA	71	NM_001291349	75430	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.100000	0.587065	
mm_113506.1	chr13	37581113	37581313	+	1	NA	NA	NA	235868	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.010000	0.457711	-32(CATTATATAAGG,-,0.00)
mm_90544.1	chr10	128092080	128092280	+	1	NA	NA	NA	-603	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.030000	0.582090	
mm_82860.1	chr9	31913138	31913338	-	1	NA	NA	NA	47	NM_013800	12023	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.100000	0.711443	
mm_150758.1	chr19	44203121	44203321	+	1	NA	NA	NA	-67	NM_024450	30049	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	0.005000	0.522388	
mm_30444.1	chr3	153705711	153705911	-	1	NA	NA	NA	19322	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.010000	0.417910	
mm_139011.1	chr17	45570626	45570826	+	1	NA	NA	NA	2535	NM_008302	15516	Mm.2180	NM_008302	ENSMUSG00000023944	Hsp90ab1	90kDa|AL022974|C81438|Hsp84|Hsp84-1|Hsp90|Hspcb	heat shock protein 90 alpha (cytosolic), class B member 1	protein-coding	0.010000	0.492537	
mm_119229.1	chr14	33312671	33312871	+	1	NA	NA	NA	95948	NM_153800	239027	Mm.318350	NM_153800	ENSMUSG00000063506	Arhgap22	B230341L19Rik|RHOGAP2|p68RacGAP	Rho GTPase activating protein 22	protein-coding	0.005000	0.427861	
mm_104445.1	chr11	95012100	95012300	-	1	NA	NA	NA	2321	NM_146025	217125	Mm.297199	NM_146025	ENSMUSG00000047181	Samd14	AI839049|AI854782|BC034054	sterile alpha motif domain containing 14	protein-coding	0.005000	0.547264	
mm_141676.1	chr17	33920258	33920458	-	1	NA	NA	NA	880	NM_009318	21356	Mm.154457	NM_009318	ENSMUSG00000024308	Tapbp	D17Wsu91e|TPN	TAP binding protein	protein-coding	0.075000	0.666667	
mm_108387.1	chr12	80946105	80946305	+	1	NA	NA	NA	706	NM_001347415	20384	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0.140000	0.726368	
mm_93766.1	chr10	120201320	120201520	-	1	NA	NA	NA	117	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.110000	0.721393	
mm_164568.1	chr17	20955535	20955735	+	1	NA	NA	NA	10181	NM_016891	51792	Mm.294138	NM_016891	ENSMUSG00000007564	Ppp2r1a	6330556D22Rik|PP2A|PR65	protein phosphatase 2, regulatory subunit A, alpha	protein-coding	0.000000	0.442786	
mm_44711.1	chr5	30933777	30933977	-	1	NA	NA	NA	11550	NM_001160149	68567	Mm.45127	NM_026770	ENSMUSG00000029161	Cgref1	1110004G24Rik|AW045201|Cgr11	cell growth regulator with EF hand domain 1	protein-coding	0.015000	0.562189	
mm_9517.1	chr1	173748187	173748387	-	1	NA	NA	NA	-6478	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.000000	0.472637	
mm_102493.1	chr11	60263288	60263488	-	1	NA	NA	NA	-42761	NM_001313979	20787	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP-1a|SREBP1|SREBP1c|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.000000	0.467662	
mm_42155.1	chr5	112156127	112156327	+	1	NA	NA	NA	-50536	NR_045377	75569	Mm.243721	NR_045377	ENSMUSG00000101683	1700028D13Rik	-	RIKEN cDNA 1700028D13 gene	ncRNA	0.005000	0.572139	
mm_13710.1	chr2	117159761	117159961	+	1	NA	NA	NA	-25266	NR_030440	732489		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.005000	0.363184	52(TCTTTAATAGAC,+,0.00)
mm_120044.1	chr14	56575442	56575642	+	1	NA	NA	NA	-77	NM_001145978	328417	Mm.379357	NM_001145978	ENSMUSG00000054509	Parp4	Adprtl1|C030027K23Rik|E230037B21Rik|Gm743|PARPL|PH5P|VAULT3|VPARP|p193	poly (ADP-ribose) polymerase family, member 4	protein-coding	0.065000	0.606965	14(CCTCTAAGGGGC,+,0.00)
mm_113684.1	chr13	42866186	42866386	+	1	NA	NA	NA	39	NM_001302636	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.015000	0.542289	
mm_78839.1	chr9	44326750	44326950	+	1	NA	NA	NA	5	NM_007875	13478	Mm.18353	NM_007875	ENSMUSG00000032123	Dpagt1	AU021132|Dpagt2|GPT|Gnpta	dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)	protein-coding	0.055000	0.562189	
mm_86647.1	chr10	17476768	17476968	+	1	NA	NA	NA	-246360	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.020000	0.522388	
mm_173307.1	chrY	83633656	83633856	+	1	NA	NA	NA	294155	NM_001160131	100040911	Mm.457993	NM_001160131	ENSMUSG00000095650	Gm20854	-	predicted gene, 20854	protein-coding	0.035000	0.492537	
mm_24846.1	chr3	95673891	95674091	+	1	NA	NA	NA	13926	NM_144899	229595	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.020000	0.552239	
mm_49764.1	chr6	34780864	34781064	+	1	NA	NA	NA	532	NM_001289656	76223	Mm.150047	NM_178630	ENSMUSG00000038836	Agbl3	2900053G10Rik|4930431N21Rik|6530406M24Rik|CCP3	ATP/GTP binding protein-like 3	protein-coding	0.100000	0.562189	57(GCTTTTAGAGAG,+,0.00)
mm_144100.1	chr18	3447007	3447207	+	1	NA	NA	NA	-60850	NM_026505	68010	Mm.284863	NM_026505	ENSMUSG00000024232	Bambi	2610003H06Rik	BMP and activin membrane-bound inhibitor	protein-coding	0.010000	0.467662	
mm_147579.1	chr18	56455527	56455727	-	1	NA	NA	NA	23495	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.015000	0.477612	
mm_168821.1	chr12	22274653	22274853	-	1	NA	NA	NA	-118107	NR_136920	100043416		NM_001004167	ENSMUSG00000093846	Gm4425	EG432637|Gm5433	KRAB-domain protein pseudogene	pseudo	0.115000	0.741294	
mm_95838.1	chr11	57011713	57011913	+	1	NA	NA	NA	195	NM_008165	14799	Mm.4920	NM_008165	ENSMUSG00000020524	Gria1	2900051M01Rik|Glr-1|Glr1|GluA1|GluR-A|GluRA|Glur-1|Glur1|HIPA1|gluR-K1	glutamate receptor, ionotropic, AMPA1 (alpha 1)	protein-coding	0.035000	0.567164	
mm_22783.1	chr3	22076563	22076763	+	1	NA	NA	NA	11	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.115000	0.766169	
mm_48730.1	chr5	147429713	147429913	-	1	NA	NA	NA	-767	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.020000	0.482587	
mm_72194.1	chr8	72515177	72515377	+	1	NA	NA	NA	-22663	NM_177766	270066	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	0.020000	0.552239	
mm_115891.1	chr13	22009619	22009819	-	1	NA	NA	NA	22	NM_019429	54373	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0.005000	0.482587	
mm_146543.1	chr18	6039307	6039507	-	1	NA	NA	NA	96691	NM_029277	75415	Mm.239675	NM_029277	ENSMUSG00000041225	Arhgap12	2810011M08Rik	Rho GTPase activating protein 12	protein-coding	0.005000	0.373134	
mm_88346.1	chr10	75837422	75837622	+	1	NA	NA	NA	-2641	NM_010361	14872	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.045000	0.601990	
mm_14049.1	chr2	122313731	122313931	+	1	NA	NA	NA	-101	NM_001305262	213696	Mm.247121	NM_145395	ENSMUSG00000027224	Duoxa1	BC019755|Nip|Nip1	dual oxidase maturation factor 1	protein-coding	0.070000	0.656716	
mm_52041.1	chr6	96375254	96375454	+	1	NA	NA	NA	-209149	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo	0.010000	0.422886	
mm_140364.1	chr17	86961402	86961602	+	1	NA	NA	NA	-1609	NM_145491	104215	Mm.826	NM_145491	ENSMUSG00000024143	Rhoq	Arhq|TC10A|Tc10	ras homolog family member Q	protein-coding	0.015000	0.497512	79(TTTTTTAAAGCA,+,0.00)
mm_32314.1	chr4	103339760	103339960	+	1	NA	NA	NA	26014	NM_025909	67013	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	0.010000	0.427861	
mm_133049.1	chr16	57570581	57570781	+	1	NA	NA	NA	21439	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.000000	0.407960	
mm_11150.1	chr2	28523890	28524090	+	1	NA	NA	NA	-9474	NM_001145835	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.005000	0.616915	
mm_92311.1	chr10	75301901	75302101	-	1	NA	NA	NA	-14876	NM_009630	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.010000	0.507463	
mm_90537.1	chr10	128090081	128090281	+	1	NA	NA	NA	-2602	NM_054078	116848	Mm.252213	NM_054078	ENSMUSG00000040054	Baz2a	AA415431|C030005G16Rik|C78388|Tip5|Walp3|mKIAA0314	bromodomain adjacent to zinc finger domain, 2A	protein-coding	0.015000	0.462687	56(GAGTATTTAAAG,-,0.00)
mm_72176.1	chr8	72318962	72319162	+	1	NA	NA	NA	0	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.105000	0.696517	-34(GCGCCTATAAGG,-,0.00),-32(GCCTATAAGGCC,+,0.00)
mm_103404.1	chr11	75439455	75439655	-	1	NA	NA	NA	-54	NM_008878	18816	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	0.030000	0.567164	
mm_167745.1	chr9	108831753	108831953	+	1	NA	NA	NA	5533	NM_080437	107934	Mm.39945	NM_080437	ENSMUSG00000023473	Celsr3	Adgrc3|Fmi1|flamingo|mKIAA0812	cadherin, EGF LAG seven-pass G-type receptor 3	protein-coding	0.065000	0.592040	
mm_2213.1	chr1	89746900	89747100	+	1	NA	NA	NA	-63108	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.010000	0.273632	
mm_88744.1	chr10	80284399	80284599	+	1	NA	NA	NA	6335	NR_105876	102466207		NR_105876	ENSMUSG00000098672	Mir6911	Gm27822|mmu-mir-6911	microRNA 6911	ncRNA	0.030000	0.641791	
mm_50767.1	chr6	53619822	53620022	+	1	NA	NA	NA	46548	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.000000	0.393035	
mm_169569.1	chr15	18314723	18314923	+	1	NA	NA	NA	54804	NR_045711	70886	Mm.399021	NR_045711		4921515E04Rik	-	RIKEN cDNA 4921515E04 gene	ncRNA	0.060000	0.641791	
mm_114029.1	chr13	52646441	52646641	+	1	NA	NA	NA	49659	NM_011518	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.000000	0.487562	
mm_3684.1	chr1	153740438	153740638	+	1	NA	NA	NA	185	NM_011267	19734	Mm.181709	NM_011267	ENSMUSG00000026475	Rgs16	Rgs14|Rgsr	regulator of G-protein signaling 16	protein-coding	0.060000	0.562189	86(TGCTATAAAGAC,-,0.00)
mm_97920.1	chr11	83574564	83574764	+	1	NA	NA	NA	3972	NM_011338	20308	Mm.416125	NM_011338	ENSMUSG00000019122	Ccl9	CCF18|MRP-2|Scya10|Scya9	chemokine (C-C motif) ligand 9	protein-coding	0.005000	0.462687	
mm_78876.1	chr9	44483091	44483291	+	1	NA	NA	NA	-15945	NM_030256	80288	Mm.370270	NM_030256	ENSMUSG00000063382	Bcl9l	B9L|BC003321|BCL9-2|DLNB11	B cell CLL/lymphoma 9-like	protein-coding	0.075000	0.686567	
mm_62838.1	chr7	113766148	113766348	+	1	NA	NA	NA	250	NM_145584	233744	Mm.334160	NM_145584	ENSMUSG00000038156	Spon1	AI666765|AW455831|BC020531|D330035F22Rik|FSP	spondin 1, (f-spondin) extracellular matrix protein	protein-coding	0.080000	0.676617	
mm_163800.1	chr14	18545253	18545453	-	1	NA	NA	NA	-213509	NM_009455	22194	Mm.4429	NM_009455	ENSMUSG00000021774	Ube2e1	UbcM3|Ubce5|ubcM2	ubiquitin-conjugating enzyme E2E 1	protein-coding	0.030000	0.477612	-32(AGCTTTAAAAAG,-,0.00),-31(GCTTTAAAAAGC,+,0.00),-30(CTTTAAAAAGCA,+,0.00)
mm_51556.1	chr6	83349374	83349574	+	1	NA	NA	NA	-10	NM_175277	78653	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0.155000	0.800995	
mm_161226.1	chr13	74062136	74062336	-	1	NA	NA	NA	49	NM_028959	74470	Mm.73234	NM_028959	ENSMUSG00000021572	Cep72	2610029E11Rik|4933440J22Rik	centrosomal protein 72	protein-coding	0.100000	0.676617	
mm_126940.1	chr15	91899320	91899520	+	1	NA	NA	NA	61092	NM_198927	223809	Mm.486225	NM_198927	ENSMUSG00000047295	Smgc	2310010P21Rik|DXImx49e|Muc19|Muc19/Smgc|Sfc21	submandibular gland protein C	protein-coding	0.040000	0.507463	
mm_4786.1	chr1	184039450	184039650	+	1	NA	NA	NA	5089	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.045000	0.587065	
mm_81929.1	chr9	120179622	120179822	+	1	NA	NA	NA	29980	NM_001039364	17433	Mm.486167	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.020000	0.442786	68(CCCTTTAGAGAA,+,0.00)
mm_111261.1	chr12	85140366	85140566	-	1	NA	NA	NA	10798	NM_146244	238323	Mm.44829	NM_146244	ENSMUSG00000019235	Rps6kl1	A830084F09Rik|AW046440	ribosomal protein S6 kinase-like 1	protein-coding	0.045000	0.572139	
mm_132824.1	chr16	45224261	45224461	+	1	NA	NA	NA	24	NM_177584	208154	Mm.38199	NM_177584	ENSMUSG00000052013	Btla	A630002H24	B and T lymphocyte associated	protein-coding	0.015000	0.497512	
mm_27455.1	chr3	52064130	52064330	-	1	NA	NA	NA	40776	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like 3 (Drosophila)	protein-coding	0.005000	0.308458	
mm_154008.1	chr19	53039142	53039342	-	1	NA	NA	NA	-588	NM_133216	170750	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	0.035000	0.532338	
mm_31889.1	chr4	82509488	82509688	+	1	NA	NA	NA	1599	NR_137202	102635783	Mm.41666	NR_137202		Gm11266	OTTMUSG00000000396	predicted gene 11266	ncRNA	0.010000	0.462687	
mm_138085.1	chr17	33996938	33997138	+	1	NA	NA	NA	3295	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.010000	0.507463	
mm_149521.1	chr19	12442701	12442901	+	1	NA	NA	NA	14896	NM_019540	56093	Mm.285849	NM_019540	ENSMUSG00000040065	Pfpl	Epcs5|Epcs50	pore forming protein-like	protein-coding	0.015000	0.507463	
mm_116590.1	chr13	48314511	48314711	-	1	NA	NA	NA	-40727	NR_045162	320315	Mm.185120	NR_045162	ENSMUSG00000097326	A330048O09Rik	-	RIKEN cDNA A330048O09 gene	ncRNA	0.020000	0.472637	-34(GCTTATATAACC,+,0.00)
mm_67170.1	chr7	73556620	73556820	-	1	NA	NA	NA	1675	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.015000	0.363184	-9(CCTTTTATGGGG,+,0.00)
mm_20530.1	chr2	131025016	131025216	-	1	NA	NA	NA	15282	NR_105969	102465606		NR_105969	ENSMUSG00000098686	Mir6973b	Gm27815|mmu-mir-6973b	microRNA 6973b	ncRNA	0.005000	0.452736	
mm_93780.1	chr10	120476409	120476609	-	1	NA	NA	NA	-40	NM_010441	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0.050000	0.616915	
mm_19636.1	chr2	102828478	102828678	-	1	NA	NA	NA	73087	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.025000	0.437811	
mm_66052.1	chr7	30736861	30737061	-	1	NA	NA	NA	2446	NM_008085	14447	Mm.436562	NM_008085	ENSMUSG00000061099	Gapdhs	Gapd-s|Gapds	glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	protein-coding	0.025000	0.527363	
mm_38718.1	chr4	145234662	145234862	-	1	NA	NA	NA	12108	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.000000	0.432836	
mm_62461.1	chr7	101547983	101548183	+	1	NA	NA	NA	7719	NM_007490	11871	Mm.439746	NM_007490	ENSMUSG00000092517	Art2a-ps	ARTC2|Art2a|Ly92a|Rt-6|Rt6|Rt6-1	ADP-ribosyltransferase 2a, pseudogene	protein-coding	0.000000	0.353234	
mm_93207.1	chr10	94943724	94943924	-	1	NA	NA	NA	754	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.080000	0.651741	
mm_60983.1	chr7	48990743	48990943	+	1	NA	NA	NA	31770	NM_001111016	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.010000	0.437811	-80(GCTTATATAGCA,+,0.00)
mm_114317.1	chr13	60029607	60029807	+	1	NA	NA	NA	-4	NR_046142	328263	Mm.123405	NR_046142		A530065N20Rik	A530065N20	RIKEN cDNA A530046M15 gene	ncRNA	0.020000	0.522388	
mm_34183.1	chr4	140700508	140700708	+	1	NA	NA	NA	-865	NM_173867	108911	Mm.253	NM_173867	ENSMUSG00000040945	Rcc2	2610510H01Rik|2610529N02Rik|AA536646|AA675016|Td60|mKIAA1470	regulator of chromosome condensation 2	protein-coding	0.035000	0.572139	
mm_72839.1	chr8	88293679	88293879	+	1	NA	NA	NA	-425	NM_001037724	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.015000	0.522388	
mm_36265.1	chr4	63600660	63600860	-	1	NA	NA	NA	4	NR_028584	670833	Mm.32213	NR_028583	ENSMUSG00000084782	Gm11213	OTTMUSG00000000252	predicted gene 11213	ncRNA	0.015000	0.517413	
mm_14510.1	chr2	132263228	132263428	+	1	NA	NA	NA	180	NM_138651	110911	Mm.284503	NM_138651	ENSMUSG00000058793	Cds2	5730450N06Rik|5730460C18Rik|AI854580|D2Wsu127e	CDP-diacylglycerol synthase (phosphatidate cytidylyltransferase) 2	protein-coding	0.125000	0.771144	
mm_168664.1	chr11	90072063	90072263	+	1	NA	NA	NA	41815	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.005000	0.567164	
mm_108743.1	chr12	88724914	88725114	+	1	NA	NA	NA	-69490	NM_001198587	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.030000	0.522388	
mm_28661.1	chr3	95251011	95251211	-	1	NA	NA	NA	82	NM_001168356	171388	Mm.331209	NM_134253	ENSMUSG00000028115	Bnipl	1700128A13Rik|BNIP-S|BNIPL1|BNIPL2|PP73|PP753	BCL2/adenovirus E1B 19kD interacting protein like	protein-coding	0.005000	0.567164	
mm_58958.1	chr7	18884594	18884794	+	1	NA	NA	NA	4	NM_009402	21946	Mm.21855	NM_009402	ENSMUSG00000030413	Pglyrp1	PGRP|PGRP-S|Pglyrp|Tag7|Tasg7|Tnfsf3l	peptidoglycan recognition protein 1	protein-coding	0.030000	0.597015	
mm_99385.1	chr11	102097121	102097321	+	1	NA	NA	NA	4079	NM_008918	19064	Mm.1269	NM_008918	ENSMUSG00000017316	Ppy	AV061413|IGSPP|PP	pancreatic polypeptide	protein-coding	0.070000	0.691542	
mm_37306.1	chr4	119294174	119294374	-	1	NA	NA	NA	239	NM_011732	22608	Mm.258204	NM_011732	ENSMUSG00000028639	Ybx1	1700102N10Rik|C79409|EF1A|MSY1|Nsep1|YB-1|dbpB|mYB-1a	Y box protein 1	protein-coding	0.140000	0.771144	
mm_45178.1	chr5	51567046	51567246	-	1	NA	NA	NA	579	NR_132764	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.000000	0.308458	32(CTCCTTAAAGAG,-,0.00),34(CCTTAAAGAGAT,+,0.00)
mm_1430.1	chr1	67180011	67180211	+	1	NA	NA	NA	57084	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.030000	0.437811	
mm_33369.1	chr4	129514666	129514866	+	1	NA	NA	NA	1185	NM_010807	17357	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0.035000	0.646766	
mm_141480.1	chr17	31198839	31199039	-	1	NA	NA	NA	35	NM_001163776	140765	Mm.214638	NM_080727	ENSMUSG00000024034	Tmprss3	-	transmembrane protease, serine 3	protein-coding	0.035000	0.517413	
mm_23019.1	chr3	34589836	34590036	+	1	NA	NA	NA	29555	NR_015580	320478	Mm.444063	NR_015580	ENSMUSG00000105265	Sox2ot	B230215L15Rik	SOX2 overlapping transcript (non-protein coding)	ncRNA	0.010000	0.457711	
mm_78067.1	chr9	15306131	15306331	+	1	NA	NA	NA	17	NM_027261	75316	Mm.354115	NM_026541	ENSMUSG00000031939	Taf1d	2810003M17Rik|4930553M18Rik|5930426I11Rik|Josd3|TAF(I)41|TAFI41	TATA-box binding protein associated factor, RNA polymerase I, D	protein-coding	0.115000	0.681592	
mm_87398.1	chr10	45336206	45336406	+	1	NA	NA	NA	544	NM_024285	23828	Mm.332793	NM_024285	ENSMUSG00000071317	Bves	Pop1|Popdc1|mBVES	blood vessel epicardial substance	protein-coding	0.025000	0.343284	
mm_85298.1	chr9	100505069	100505269	-	1	NA	NA	NA	1687	NM_001324530	17973	Mm.181485	NM_010878	ENSMUSG00000032475	Nck1	6330586M15Rik|D230010O13Rik|Nck|Nck-1	non-catalytic region of tyrosine kinase adaptor protein 1	protein-coding	0.005000	0.388060	
mm_54005.1	chr6	7694722	7694922	-	1	NA	NA	NA	-1640	NM_012055	27053	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0.005000	0.442786	
mm_91957.1	chr10	61114060	61114260	-	1	NA	NA	NA	24829	NM_025273	13180	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.010000	0.432836	
mm_19725.1	chr2	104493230	104493430	-	1	NA	NA	NA	1159	NM_010434	15259	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.115000	0.676617	
mm_29305.1	chr3	107943255	107943455	-	1	NA	NA	NA	394	NM_008184	14867	Mm.458154	NM_008184	ENSMUSG00000068762	Gstm6	-	glutathione S-transferase, mu 6	protein-coding	0.030000	0.522388	
mm_146427.1	chr18	84851289	84851489	+	1	NA	NA	NA	-25	NM_025797	109672	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.050000	0.651741	
mm_54808.1	chr6	42040084	42040284	-	1	NA	NA	NA	1790	NM_009299	20939	Mm.4119	NM_009299	ENSMUSG00000023289	Sva	-	seminal vesicle antigen	protein-coding	0.020000	0.298507	
mm_81209.1	chr9	107580573	107580773	+	1	NA	NA	NA	4	NM_019750	56441	Mm.10305	NM_019750	ENSMUSG00000079334	Nat6	AI225910|Fus2	N-acetyltransferase 6	protein-coding	0.055000	0.611940	
mm_8029.1	chr1	135132449	135132649	-	1	NA	NA	NA	26	NM_007955	13924	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP|mOST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	0.035000	0.651741	-33(CCCTCTAAGAGC,-,0.00)
mm_160991.1	chr11	106349048	106349248	-	1	NA	NA	NA	242	NM_133199	110880	Mm.432528	NM_133199	ENSMUSG00000001027	Scn4a	Nav1.4|SkM1|mH2	sodium channel, voltage-gated, type IV, alpha	protein-coding	0.035000	0.601990	
mm_96104.1	chr11	60537873	60538073	+	1	NA	NA	NA	290	NM_172943	268420	Mm.262056	NM_172943	ENSMUSG00000042650	Alkbh5	AW050020|AW215868|Abh5|E130207K11|Ofoxd	alkB homolog 5, RNA demethylase	protein-coding	0.175000	0.751244	
mm_152294.1	chr19	9083585	9083785	-	1	NA	NA	NA	4271	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.015000	0.497512	
mm_50537.1	chr6	49045945	49046145	+	1	NA	NA	NA	9527	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.000000	0.278607	57(AACCATAAAAGG,-,0.00)
mm_48341.1	chr5	139150591	139150791	-	1	NA	NA	NA	468	NM_001081265	433956	Mm.5547	NM_001081265	ENSMUSG00000025857	Dnaaf5	BC053401|C76907|Heatr2	dynein, axonemal assembly factor 5	protein-coding	0.180000	0.786070	
mm_133119.1	chr16	65815083	65815283	+	1	NA	NA	NA	-450	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.070000	0.671642	
mm_131709.1	chr16	20837043	20837243	+	1	NA	NA	NA	-102632	NM_009379	21832	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.010000	0.492537	
mm_67194.1	chr7	73996281	73996481	-	1	NA	NA	NA	17301	NM_009181	20450	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0.015000	0.537313	
mm_20554.1	chr2	131071288	131071488	-	1	NA	NA	NA	-7574	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.020000	0.582090	
mm_51471.1	chr6	82960174	82960374	+	1	NA	NA	NA	13352	NM_033079	110958	Mm.100652	NM_033079	ENSMUSG00000030041	M1ap	D6Mm5e	meiosis 1 associated protein	protein-coding	0.000000	0.412935	
mm_38816.1	chr4	148500358	148500558	-	1	NA	NA	NA	4	NM_001039554	654812	Mm.388929	NM_001039554	ENSMUSG00000028989	Angptl7	-	angiopoietin-like 7	protein-coding	0.010000	0.497512	
mm_105537.1	chr11	106301394	106301594	-	1	NA	NA	NA	402	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.025000	0.592040	
mm_27620.1	chr3	59343964	59344164	-	1	NA	NA	NA	192	NM_001162884	242050	Mm.228086	NM_001162884	ENSMUSG00000036334	Igsf10	6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608	immunoglobulin superfamily, member 10	protein-coding	0.035000	0.447761	
mm_107055.1	chr12	16653516	16653716	+	1	NA	NA	NA	146	NM_008747	18217	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT2R|NTRL	neurotensin receptor 2	protein-coding	0.110000	0.716418	
mm_9058.1	chr1	167372320	167372520	-	1	NA	NA	NA	21377	NM_025569	66447	Mm.218286	NM_025569	ENSMUSG00000026688	Mgst3	2010012L10Rik|2010306B17Rik|2700004G04Rik|AA516734|GST-III	microsomal glutathione S-transferase 3	protein-coding	0.010000	0.437811	
mm_149976.1	chr19	29081644	29081844	+	1	NA	NA	NA	14443	NR_045687	100503337	Mm.103412	NR_045687		Gm9895	ENSMUSG00000052976	predicted gene 9895	ncRNA	0.035000	0.507463	
mm_160609.1	chr9	80217517	80217717	+	1	NA	NA	NA	52583	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.010000	0.402985	
mm_143041.1	chr17	56757456	56757656	-	1	NA	NA	NA	-8	NM_008738	18188	Mm.8074	NM_008738	ENSMUSG00000039481	Nrtn	NTN	neurturin	protein-coding	0.150000	0.771144	
mm_57407.1	chr6	124865518	124865718	-	1	NA	NA	NA	-1701	NM_013533	14788	Mm.2514	NM_013533	ENSMUSG00000038390	Gpr162	A-2|BC031437|Grca	G protein-coupled receptor 162	protein-coding	0.010000	0.422886	
mm_86673.1	chr10	18077400	18077600	+	1	NA	NA	NA	21560	NM_001111065	19707	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0.015000	0.457711	
mm_47008.1	chr5	115474476	115474676	-	1	NA	NA	NA	8310	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.050000	0.512438	
mm_132736.1	chr16	43889772	43889972	+	1	NA	NA	NA	-30	NM_027801	212153	Mm.209835	NM_027801	ENSMUSG00000022701	Ccdc191	2610015P09Rik|8430422M09Rik|AU040712	coiled-coil domain containing 191	protein-coding	0.050000	0.597015	
mm_37378.1	chr4	120975319	120975519	-	1	NA	NA	NA	-2097	NR_105982	102465614		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.030000	0.447761	
mm_62023.1	chr7	91564576	91564776	+	1	NA	NA	NA	473890	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.000000	0.383085	
mm_131920.1	chr16	23317516	23317716	+	1	NA	NA	NA	27146	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.000000	0.472637	
mm_86831.1	chr10	21235383	21235583	+	1	NA	NA	NA	-60496	NM_001042593	56422	Mm.25527	NM_019702	ENSMUSG00000019977	Hbs1l	2810035F15Rik|AI326327|eRFS	Hbs1-like (S. cerevisiae)	protein-coding	0.000000	0.482587	
mm_61135.1	chr7	56050076	56050276	+	1	NA	NA	NA	21	NM_010418	15204	Mm.20929	NM_010418	ENSMUSG00000030451	Herc2	D15F32S1h|D7H15F32S1|D7H15F37S1|jdf2|mKIAA0393|rjs	HECT and RLD domain containing E3 ubiquitin protein ligase 2	protein-coding	0.125000	0.731343	
mm_108953.1	chr12	102367279	102367479	+	1	NA	NA	NA	72434	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.015000	0.517413	
mm_30331.1	chr3	151732041	151732241	-	1	NA	NA	NA	17818	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.005000	0.318408	20(TCTTTTAAACTG,+,0.00)
mm_59730.1	chr7	28795940	28796140	+	1	NA	NA	NA	7071	NM_177158	320435	Mm.74632	NM_177158	ENSMUSG00000051735	Rinl	5830482F20Rik|9930116N10Rik	Ras and Rab interactor-like	protein-coding	0.040000	0.557214	
mm_57462.1	chr6	125191405	125191605	-	1	NA	NA	NA	81	NM_146171	68298	Mm.257590	NM_146171	ENSMUSG00000038252	Ncapd2	2810406C15Rik|2810465G24Rik|CAP-D2|CNAP1|mKIAA0159	non-SMC condensin I complex, subunit D2	protein-coding	0.070000	0.587065	
mm_32605.1	chr4	112006189	112006389	+	1	NA	NA	NA	20	NM_001102662	639781	Mm.398873	NM_001102662	ENSMUSG00000089773	Skint1	OTTMUSG00000008542|Skint-1	selection and upkeep of intraepithelial T cells 1	protein-coding	0.005000	0.427861	
mm_4588.1	chr1	178319234	178319434	+	1	NA	NA	NA	181	NM_025511	66359	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0.045000	0.512438	
mm_97335.1	chr11	77293897	77294097	+	1	NA	NA	NA	-54283	NM_001291190	237860	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot homolog 2 (Drosophila)	protein-coding	0.020000	0.472637	
mm_120510.1	chr14	66344243	66344443	+	1	NA	NA	NA	47	NM_019675	56471	Mm.35474	NM_019675	ENSMUSG00000022044	Stmn4	Lagl|R75359|RB3	stathmin-like 4	protein-coding	0.025000	0.517413	
mm_109577.1	chr12	112489370	112489570	+	1	NA	NA	NA	22	NM_177039	319942	Mm.185209	NM_177039	ENSMUSG00000043122	A530016L24Rik	Nrac	RIKEN cDNA A530016L24 gene	protein-coding	0.035000	0.552239	
mm_163258.1	chr11	111814266	111814466	+	1	NA	NA	NA	748202	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.005000	0.273632	
mm_26744.1	chr3	6922487	6922687	-	1	NA	NA	NA	-302144	NM_027048	69347	Mm.45822	NM_027048	ENSMUSG00000069118	1700008P02Rik	-	RIKEN cDNA 1700008P02 gene	protein-coding	0.010000	0.417910	-35(CTGTATAAAAAG,-,0.00)
mm_65006.1	chr7	17056611	17056811	-	1	NA	NA	NA	-32	NM_016868	53417	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0.025000	0.646766	
mm_48157.1	chr5	137152310	137152510	-	1	NA	NA	NA	-36203	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.005000	0.477612	
mm_126383.1	chr15	80173432	80173632	+	1	NA	NA	NA	-189	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.175000	0.855721	
mm_169608.1	chr15	37003596	37003796	+	1	NA	NA	NA	3706	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.010000	0.452736	
mm_87878.1	chr10	61648552	61648752	+	1	NA	NA	NA	31	NM_026438	67895	Mm.28897	NM_026438	ENSMUSG00000020089	Ppa1	2010317E03Rik|Pyp	pyrophosphatase (inorganic) 1	protein-coding	0.120000	0.716418	-67(ACGCATTAAAGG,-,0.00)
mm_76828.1	chr8	104631188	104631388	-	1	NA	NA	NA	33	NM_019662	56437	Mm.29467	NM_019662	ENSMUSG00000031880	Rrad	REM3|Rad	Ras-related associated with diabetes	protein-coding	0.060000	0.626866	-32(GTTTAAATAGGA,+,0.00)
mm_64177.1	chr7	141457990	141458190	+	1	NA	NA	NA	2902	NM_001163689	66853	Mm.29998	NM_025802	ENSMUSG00000025509	Pnpla2	0610039C21Rik|1110001C14Rik|Atgl|TTS-2.2	patatin-like phospholipase domain containing 2	protein-coding	0.045000	0.522388	
mm_18853.1	chr2	75676441	75676641	-	1	NA	NA	NA	17251	NR_033513	627828	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	0.015000	0.477612	
mm_8126.1	chr1	136140281	136140481	-	1	NA	NA	NA	8980	NM_001039472	16565	Mm.276135	NM_019962	ENSMUSG00000041642	Kif21b	2610511N21Rik|mKIAA0449	kinesin family member 21B	protein-coding	0.075000	0.651741	
mm_159811.1	chr5	119834476	119834676	+	1	NA	NA	NA	-87	NM_011537	21388	Mm.103636	NM_011537	ENSMUSG00000018263	Tbx5	-	T-box 5	protein-coding	0.000000	0.527363	
mm_161454.1	chr15	75431639	75431839	-	1	NA	NA	NA	90	NR_108041	105892	Mm.38909	NM_001039720	ENSMUSG00000053168	9030619P08Rik	-	lymphocyte antigen 6 complex pseudogene	pseudo	0.000000	0.517413	
mm_3342.1	chr1	137969564	137969764	+	1	NA	NA	NA	3025	NR_029820	723890		NR_029820	ENSMUSG00000065458	Mir181b-1	Mirn181b-1|mir-181b-1	microRNA 181b-1	ncRNA	0.000000	0.427861	54(CCATAAATACAC,+,0.00)
mm_9305.1	chr1	171639447	171639647	-	1	NA	NA	NA	2353	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.507463	
mm_120581.1	chr14	69767398	69767598	+	1	NA	NA	NA	26	NM_020275	21933	Mm.193430	NM_020275	ENSMUSG00000022074	Tnfrsf10b	DR5|KILLER|Ly98|MK|TRAILR2|TRICK2A|TRICK2B|TRICKB	tumor necrosis factor receptor superfamily, member 10b	protein-coding	0.065000	0.552239	
mm_31621.1	chr4	59189474	59189674	+	1	NA	NA	NA	24	NM_011673	22234	Mm.198803	NM_011673	ENSMUSG00000028381	Ugcg	AU043821|C80537|Epcs21|GlcT-1|Ugcgl	UDP-glucose ceramide glucosyltransferase	protein-coding	0.145000	0.825871	
mm_131063.1	chr16	4558656	4558856	+	1	NA	NA	NA	964	NM_031182	83383	Mm.273210	NM_031182	ENSMUSG00000005718	Tfap4	AI642933|AP-4|D930048N17Rik|Tcfap4|bHLHc41	transcription factor AP4	protein-coding	0.085000	0.626866	
mm_158430.1	chrX	139871411	139871611	-	1	NA	NA	NA	143	NM_029413	75746	Mm.23269	NM_029413	ENSMUSG00000031434	Morc4	1600017G11Rik|5630401M14Rik|AA117449|Zcwcc2	microrchidia 4	protein-coding	0.095000	0.731343	
mm_46851.1	chr5	113650276	113650476	-	1	NA	NA	NA	14	NM_008153	14747	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.025000	0.557214	
mm_4916.1	chr1	190713978	190714178	+	1	NA	NA	NA	197692	NM_178775	320119	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.025000	0.467662	
mm_109059.1	chr12	104340762	104340962	+	1	NA	NA	NA	2376	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.005000	0.507463	
mm_29706.1	chr3	123385859	123386059	-	1	NA	NA	NA	31	NM_201638	210529	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	0.080000	0.597015	
mm_66335.1	chr7	43310651	43310851	-	1	NA	NA	NA	2510	NM_027264	69930	Mm.45367	NM_027264	ENSMUSG00000012640	Zfp715	2610041B18Rik|mszf15	zinc finger protein 715	protein-coding	0.000000	0.328358	
mm_19144.1	chr2	80499715	80499915	-	1	NA	NA	NA	-52419	NM_011356	20378	Mm.427436	NM_011356	ENSMUSG00000027004	Frzb	Frp|Sfrp3|frezzled|fritz|frzb-1	frizzled-related protein	protein-coding	0.000000	0.228856	11(CTTTTAATAGCT,+,0.00)
mm_165980.1	chr4	103119840	103120040	+	1	NA	NA	NA	550	NM_001039081	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.055000	0.616915	
mm_43007.1	chr5	123641664	123641864	+	1	NA	NA	NA	42597	NM_019765	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.015000	0.577114	
mm_69885.1	chr7	141636990	141637190	-	1	NA	NA	NA	16389	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.020000	0.467662	
mm_127668.1	chr15	102657014	102657214	+	1	NA	NA	NA	13933	NM_026468	67942	Mm.10314	NM_026468	ENSMUSG00000062683	Atp5g2	1810041M08Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C2 (subunit 9)	protein-coding	0.005000	0.522388	
mm_36343.1	chr4	73718440	73718640	-	1	NA	NA	NA	35026	NM_001081644	242502	Mm.331671	NM_001081644	ENSMUSG00000095341	Gm428	-	predicted gene 428	protein-coding	0.010000	0.388060	-67(CCTTTTATGTCC,+,0.00)
mm_85768.1	chr9	108937104	108937304	-	1	NA	NA	NA	556	NM_025407	22273	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	0.045000	0.597015	
mm_117023.1	chr13	58183219	58183419	-	1	NA	NA	NA	25670	NM_198004	75731	Mm.293919	NM_198004	ENSMUSG00000050002	Idnk	5133401N09Rik	idnK gluconokinase homolog (E. coli)	protein-coding	0.010000	0.383085	
mm_113343.1	chr13	31785164	31785364	+	1	NA	NA	NA	-21382	NM_008592	17300	Mm.12949	NM_008592	ENSMUSG00000050295	Foxc1	FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda	forkhead box C1	protein-coding	0.010000	0.552239	
mm_134381.1	chr16	17175860	17176060	-	1	NA	NA	NA	25532	NM_009456	22195	Mm.3074	NM_009456	ENSMUSG00000038965	Ube2l3	C79827|UbcM4|Ubce7	ubiquitin-conjugating enzyme E2L 3	protein-coding	0.010000	0.562189	
mm_27040.1	chr3	26331811	26332011	-	1	NA	NA	NA	-2	NM_138666	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.065000	0.631841	
mm_166890.1	chr7	28131597	28131797	-	1	NA	NA	NA	2231	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.035000	0.547264	43(TACTTTAAAGGC,-,0.00),44(ACTTTAAAGGCC,+,0.00)
mm_145336.1	chr18	56432005	56432205	+	1	NA	NA	NA	-27	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.070000	0.636816	
mm_170943.1	chr2	50296355	50296555	+	1	NA	NA	NA	222	NM_133839	109129	Mm.29214	NM_133839	ENSMUSG00000026766	Mmadhc	2010311D03Rik|AI314967|CblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding	0.095000	0.736318	
mm_33374.1	chr4	129515498	129515698	+	1	NA	NA	NA	2017	NM_010807	17357	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0.005000	0.527363	
mm_80460.1	chr9	77983477	77983677	+	1	NA	NA	NA	66212	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.015000	0.442786	-73(GTGTTTAAAGAG,-,0.00),49(GTTTTTATACAG,+,0.00)
mm_80968.1	chr9	103111899	103112099	+	1	NA	NA	NA	-75	NM_173781	270192	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.130000	0.796020	
mm_147010.1	chr18	34507240	34507440	-	1	NA	NA	NA	-517	NM_146084	225358	Mm.226899	NM_146084	ENSMUSG00000036501	Fam13b	2610024E20Rik|AW060714|AW546153	family with sequence similarity 13, member B	protein-coding	0.035000	0.497512	
mm_43996.1	chr5	146832894	146833094	+	1	NA	NA	NA	104	NM_019647	19933	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	0.105000	0.646766	
mm_109780.1	chr12	119390561	119390761	+	1	NA	NA	NA	-52749	NM_001163136	238455	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0.015000	0.472637	
mm_170545.1	chr19	40125352	40125552	+	1	NA	NA	NA	35773	NM_001167875	107141	Mm.474575	NM_134144	ENSMUSG00000054827	Cyp2c50	AI266900	cytochrome P450, family 2, subfamily c, polypeptide 50	protein-coding	0.010000	0.502488	
mm_127248.1	chr15	99670262	99670462	+	1	NA	NA	NA	-356	NM_009597	11419	Mm.440107	NM_009597	ENSMUSG00000023017	Asic1	AI843610|ASIC|ASIC1a|Accn2|B530003N02Rik|BNaC2	acid-sensing (proton-gated) ion channel 1	protein-coding	0.095000	0.666667	
mm_54476.1	chr6	34988347	34988547	-	1	NA	NA	NA	-10448	NM_001025573	243753	Mm.440221	NM_001025573	ENSMUSG00000029847	Slc23a4	2010107G12Rik|Gm468	solute carrier family 23 member 4	protein-coding	0.030000	0.577114	-33(CTCTTTTAAAGC,-,0.00),-32(TCTTTTAAAGCA,+,0.00),-31(CTTTTAAAGCAC,+,0.00)
mm_597.1	chr1	39578800	39579000	+	1	NA	NA	NA	-1553	NM_001033135	67702	Mm.28614	NM_001033135	ENSMUSG00000048234	Rnf149	1600023E10Rik|AV037261|C76763|Gm15832|Greul4|OTTMUSG00000026591	ring finger protein 149	protein-coding	0.000000	0.388060	
mm_13765.1	chr2	118546648	118546848	+	1	NA	NA	NA	851	NM_001331221	171543	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.015000	0.562189	
mm_67059.1	chr7	67373118	67373318	-	1	NA	NA	NA	-360	NM_001291195	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.090000	0.671642	
mm_171266.1	chr3	86672141	86672341	-	1	NA	NA	NA	-123958	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.035000	0.477612	
mm_93751.1	chr10	120170344	120170544	-	1	NA	NA	NA	31093	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.010000	0.422886	
mm_171800.1	chr5	123628112	123628312	-	1	NA	NA	NA	-55197	NM_029929	77573	Mm.41372	NM_029929	ENSMUSG00000029434	Vps33a	3830421M04Rik|AI503300|AW048546|AW554476|bf	VPS33A CORVET/HOPS core subunit	protein-coding	0.020000	0.432836	
mm_76922.1	chr8	105933747	105933947	-	1	NA	NA	NA	15	NM_023182	109660	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.010000	0.542289	
mm_62974.1	chr7	120102253	120102453	+	1	NA	NA	NA	-73	NM_145586	233806	Mm.257952	NM_145586	ENSMUSG00000030917	Tmem159	8430420C20Rik	transmembrane protein 159	protein-coding	0.050000	0.646766	
mm_78293.1	chr9	22388826	22389026	+	1	NA	NA	NA	280	NM_028390	68743	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0.130000	0.736318	
mm_90920.1	chr10	12614507	12614707	-	1	NA	NA	NA	247128	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.040000	0.447761	
mm_53070.1	chr6	124914816	124915016	+	1	NA	NA	NA	3030	NM_026988	69202	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	0.025000	0.557214	
mm_56436.1	chr6	97384407	97384607	-	1	NA	NA	NA	74779	NM_001346639	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.010000	0.492537	
mm_13152.1	chr2	92382837	92383037	+	1	NA	NA	NA	19	NM_183112	75641	Mm.330409	NM_183112	ENSMUSG00000044916	1700029I15Rik	1700021K07Rik	RIKEN cDNA 1700029I15 gene	protein-coding	0.020000	0.567164	
mm_141998.1	chr17	35195621	35195821	-	1	NA	NA	NA	749	NR_105939	102465588		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	0.090000	0.671642	
mm_153665.1	chr19	44395808	44396008	-	1	NA	NA	NA	11801	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.000000	0.452736	
mm_25729.1	chr3	122834254	122834454	+	1	NA	NA	NA	-32374	NR_045168	71647	Mm.449992	NR_045168	ENSMUSG00000106583	4930447N08Rik	-	RIKEN cDNA 4930447N08 gene	ncRNA	0.010000	0.383085	
mm_23599.1	chr3	65109178	65109378	+	1	NA	NA	NA	-90	NM_010597	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.040000	0.606965	
mm_26284.1	chr3	142505701	142505901	+	1	NA	NA	NA	8867	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.000000	0.407960	6(GTTTATTTAAGG,-,0.00)
mm_42437.1	chr5	115429499	115429699	+	1	NA	NA	NA	-86	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.170000	0.840796	
mm_67380.1	chr7	79842113	79842313	-	1	NA	NA	NA	139	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.025000	0.562189	
mm_20740.1	chr2	137116664	137116864	-	1	NA	NA	NA	-244	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.090000	0.621891	
mm_99402.1	chr11	102192271	102192471	+	1	NA	NA	NA	2672	NM_175935	68401	Mm.22385	NM_175935	ENSMUSG00000034793	G6pc3	0710001K01Rik|AU019276|AU045429|AV128920|AW545836|UGRP	glucose 6 phosphatase, catalytic, 3	protein-coding	0.015000	0.512438	-59(CCTCATAAAGCC,+,0.00)
mm_143852.1	chr17	84156327	84156527	-	1	NA	NA	NA	31520	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.055000	0.601990	
mm_61500.1	chr7	76229682	76229882	+	1	NA	NA	NA	-105	NM_001199224	244071	Mm.322829	NM_172902	ENSMUSG00000025754	Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding	0.015000	0.597015	
mm_51304.1	chr6	72310535	72310735	+	1	NA	NA	NA	6025	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.000000	0.507463	
mm_55212.1	chr6	52224502	52224702	-	1	NA	NA	NA	2768	NM_010456	15405	Mm.4694	NM_010456	ENSMUSG00000038227	Hoxa9	D6a9|Hox-1.7	homeobox A9	protein-coding	0.025000	0.567164	
mm_36583.1	chr4	88033202	88033402	-	1	NA	NA	NA	105	NM_027326	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.065000	0.656716	
mm_138586.1	chr17	35505961	35506161	+	1	NA	NA	NA	29	NM_013633	18999	Mm.17031	NM_013633	ENSMUSG00000024406	Pou5f1	NF-A3|Oct-3|Oct-3/4|Oct-4|Oct3|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4	POU domain, class 5, transcription factor 1	protein-coding	0.030000	0.671642	
mm_156952.1	chrX	169987417	169987617	+	1	NA	NA	NA	-8600	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.045000	0.522388	
mm_32747.1	chr4	116674911	116675111	+	1	NA	NA	NA	-10588	NM_011034	18477	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0.015000	0.467662	-30(GGTTTTATAAGA,-,0.00)
mm_8483.1	chr1	153549640	153549840	-	1	NA	NA	NA	-26	NM_028749	74091	Mm.24887	NM_028749	ENSMUSG00000042684	Npl	0610033B02Rik	N-acetylneuraminate pyruvate lyase	protein-coding	0.100000	0.671642	
mm_121989.1	chr14	26442629	26442829	-	1	NA	NA	NA	85182	NR_038005	71106	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.020000	0.462687	
mm_61370.1	chr7	69917804	69918004	+	1	NA	NA	NA	419918	NR_131145	624549	Mm.116344	NR_131144	ENSMUSG00000109097	Gm29683	-	predicted gene, 29683	ncRNA	0.005000	0.417910	
mm_110687.1	chr12	67222495	67222695	-	1	NA	NA	NA	-46	NM_207010	320772	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	0.100000	0.696517	
mm_7799.1	chr1	131525320	131525520	-	1	NA	NA	NA	1941	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.040000	0.577114	
mm_29553.1	chr3	116807734	116807934	-	1	NA	NA	NA	332	NM_001081326	77559	Mm.237099	NM_001081326	ENSMUSG00000033400	Agl	1110061O17Rik|9430004C13Rik|9630046L06Rik|AI850929|C77197	amylo-1,6-glucosidase, 4-alpha-glucanotransferase	protein-coding	0.030000	0.542289	
mm_126929.1	chr15	91673278	91673478	+	1	NA	NA	NA	154	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.035000	0.562189	
mm_125282.1	chr15	36439262	36439462	+	1	NA	NA	NA	57429	NM_175134	68839	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0.020000	0.442786	
mm_124494.1	chr14	121797549	121797749	-	1	NA	NA	NA	85	NM_134074	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.150000	0.766169	
mm_100933.1	chr11	6519714	6519914	-	1	NA	NA	NA	1144	NM_178440	246177	Mm.239554	NM_178440	ENSMUSG00000020437	Myo1g	E430002D17Rik	myosin IG	protein-coding	0.015000	0.562189	
mm_136554.1	chr17	3114870	3115070	+	1	NA	NA	NA	-2	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.160000	0.756219	
mm_158096.1	chrX	101639673	101639873	-	1	NA	NA	NA	-278	NM_139144	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.040000	0.393035	
mm_140670.1	chr17	12916711	12916911	-	1	NA	NA	NA	482	NM_013686	21454	Mm.229342	NM_013686	ENSMUSG00000068039	Tcp1	AI528772|CCT|Cct1|Ccta|TRic|Tcp-1|Tp63|c-cpn|p63	t-complex protein 1	protein-coding	0.080000	0.621891	
mm_117326.1	chr13	67830905	67831105	-	1	NA	NA	NA	-20	NR_045194	320163	Mm.444711	NR_045194	ENSMUSG00000097276	4930525G20Rik	-	RIKEN cDNA 4930525G20 gene	ncRNA	0.025000	0.482587	
mm_106317.1	chr11	118302989	118303189	-	1	NA	NA	NA	-12845	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.015000	0.537313	
mm_172605.1	chr8	15519885	15520085	+	1	NA	NA	NA	462332	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.080000	0.542289	28(AACTTTAAATGG,-,0.00)
mm_93058.1	chr10	88751195	88751395	-	1	NA	NA	NA	19881	NM_025859	104303	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0.005000	0.407960	
mm_11871.1	chr2	49132401	49132601	+	1	NA	NA	NA	-113399	NM_001290656	109241	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630|OTTMUSG00000012483	methyl-CpG binding domain protein 5	protein-coding	0.000000	0.293532	32(TCTTTTATACTA,+,0.00)
mm_122710.1	chr14	52235190	52235390	-	1	NA	NA	NA	2282	NM_201637	67772	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	0.015000	0.572139	
mm_103996.1	chr11	84870055	84870255	-	1	NA	NA	NA	150	NR_131201	102635561	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	0.110000	0.706468	
mm_70092.1	chr7	142656085	142656285	-	1	NA	NA	NA	-1189	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.005000	0.592040	
mm_103534.1	chr11	77489551	77489751	-	1	NA	NA	NA	27	NM_172945	268445	Mm.39296	NM_172945	ENSMUSG00000037907	Ankrd13b	AW124583|B930093C12Rik	ankyrin repeat domain 13b	protein-coding	0.205000	0.870647	
mm_140132.1	chr17	79616768	79616968	+	1	NA	NA	NA	1968	NM_201361	381110	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.010000	0.412935	
mm_168118.1	chr10	16943118	16943318	+	1	NA	NA	NA	152564	NR_038020	100504235	Mm.84044	NR_038020	ENSMUSG00000101969	Gm20125	-	predicted gene, 20125	ncRNA	0.015000	0.388060	
mm_38532.1	chr4	141566241	141566441	-	1	NA	NA	NA	20179	NR_030695	320456	Mm.32859	NM_177163		B330016D10Rik	-	RIKEN cDNA B330016D10 gene	ncRNA	0.010000	0.517413	-82(CCCTAGATAAGC,-,0.00)
mm_9751.1	chr1	180808144	180808344	-	1	NA	NA	NA	5361	NM_008210	15078	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	H3.3A	H3 histone, family 3A	protein-coding	0.010000	0.527363	
mm_122641.1	chr14	51255650	51255850	-	1	NA	NA	NA	362	NM_053113	93726	Mm.153688	NM_053113	ENSMUSG00000047222	Rnase2a	Ear11	ribonuclease, RNase A family, 2A (liver, eosinophil-derived neurotoxin)	protein-coding	0.030000	0.452736	
mm_10884.1	chr2	25255575	25255775	+	1	NA	NA	NA	236	NM_177344	227615	Mm.213925	NM_177344	ENSMUSG00000078201	Tmem203	C730025P13Rik|Hbebp1	transmembrane protein 203	protein-coding	0.095000	0.656716	
mm_166204.1	chr5	43672195	43672395	+	1	NA	NA	NA	9916	NM_172274	231214	Mm.44434	NM_172274	ENSMUSG00000039765	Cc2d2a	5730509K17Rik|b2b1035Clo	coiled-coil and C2 domain containing 2A	protein-coding	0.015000	0.507463	
mm_61546.1	chr7	79361038	79361238	+	1	NA	NA	NA	25889	NM_020599	19771	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	0.015000	0.542289	
mm_84234.1	chr9	62122539	62122739	-	1	NA	NA	NA	-45	NR_039595	100628602		NR_039595	ENSMUSG00000092696	Mir5133	mir-5133|mmu-mir-5133|mu-mir-5133	microRNA 5133	ncRNA	0.135000	0.756219	
mm_122768.1	chr14	54384079	54384279	-	1	NA	NA	NA	23338	NM_026936	69089	Mm.182340	NM_026936	ENSMUSG00000000959	Oxa1l	1810020M02Rik|AI894287	oxidase assembly 1-like	protein-coding	0.010000	0.378109	
mm_27729.1	chr3	69044555	69044755	-	1	NA	NA	NA	87	NM_025863	66949	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.180000	0.810945	
mm_114919.1	chr13	95324744	95324944	+	1	NA	NA	NA	19	NM_028106	72114	Mm.3774	NM_028106	ENSMUSG00000041995	Zbed3	0610037K01Rik|2610005H11Rik|AU018975|AU024588	zinc finger, BED type containing 3	protein-coding	0.035000	0.477612	
mm_59449.1	chr7	27133403	27133603	+	1	NA	NA	NA	13548	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.030000	0.492537	
mm_28057.1	chr3	84220741	84220941	-	1	NA	NA	NA	36	NM_030706	80890	Mm.44876	NM_030706	ENSMUSG00000027993	Trim2	mKIAA0517|narf	tripartite motif-containing 2	protein-coding	0.025000	0.497512	
mm_146813.1	chr18	20831544	20831744	-	1	NA	NA	NA	64434	NM_177038	75964	Mm.273769	NM_029491	ENSMUSG00000033382	Trappc8	5033403J15Rik|AI845423|D030074E01Rik|Trs85|mKIAA1012	trafficking protein particle complex 8	protein-coding	0.000000	0.378109	
mm_173263.1	chrX	94903230	94903430	+	1	NA	NA	NA	-105041	NR_003292	668171	Mm.426134	NR_003292		Zxda	4933406P09Rik|AW413531	zinc finger, X-linked, duplicated A	pseudo	0.010000	0.353234	-70(GTTTTTAAAAAG,-,0.00),23(GTTTTTTAAAGG,-,0.00),24(TTTTTTAAAGGA,+,0.00)
mm_114301.1	chr13	59497109	59497309	+	1	NA	NA	NA	47242	NM_001284221	67269	Mm.153008	NM_023328	ENSMUSG00000021557	Agtpbp1	1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd	ATP/GTP binding protein 1	protein-coding	0.010000	0.512438	
mm_12108.1	chr2	61589403	61589603	+	1	NA	NA	NA	-3594	NM_001164072	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.005000	0.378109	
mm_41195.1	chr5	88327995	88328195	+	1	NA	NA	NA	10783	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.020000	0.462687	
mm_80119.1	chr9	70543141	70543341	+	1	NA	NA	NA	371	NM_025690	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.145000	0.810945	
mm_150754.1	chr19	43839935	43840135	+	1	NA	NA	NA	1232	NR_033472	100038628	Mm.212585	NR_033472	ENSMUSG00000025194	Gm10768	ENSMUSG00000074828	predicted gene 10768	ncRNA	0.005000	0.353234	
mm_98571.1	chr11	95440397	95440597	+	1	NA	NA	NA	26414	NM_025287	20747	Mm.285454	NM_025287	ENSMUSG00000057522	Spop	AI315626|Pcif1|TEF2	speckle-type POZ protein	protein-coding	0.000000	0.258706	
mm_99310.1	chr11	101377089	101377289	+	1	NA	NA	NA	9473	NM_008061	14377	Mm.18064	NM_008061	ENSMUSG00000078650	G6pc	AW107337|G6Pase|G6pt|Glc-6-Pase	glucose-6-phosphatase, catalytic	protein-coding	0.025000	0.432836	
mm_110949.1	chr12	76643821	76644021	-	1	NA	NA	NA	66626	NM_013675	20741	Mm.32881	NM_013675	ENSMUSG00000021061	Sptb	AI842465|D330027P03Rik|Gm1301|Spnb-1|Spnb1|ja|jaundiced|mKIAA4219	spectrin beta, erythrocytic	protein-coding	0.030000	0.562189	
mm_42319.1	chr5	114897460	114897660	+	1	NA	NA	NA	626	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.010000	0.507463	
mm_70115.1	chr7	142699425	142699625	-	1	NA	NA	NA	-19799	NM_001185084	16334	Mm.4946	NM_008387	ENSMUSG00000000215	Ins2	AA986540|Ins-2|InsII|Mody|Mody4	insulin II	protein-coding	0.015000	0.457711	-34(CTTTTTAAAAAC,+,0.00)
mm_166455.1	chr5	137981465	137981665	+	1	NA	NA	NA	44	NM_013478	12007	Mm.30061	NM_013478	ENSMUSG00000037053	Azgp1	Zag	alpha-2-glycoprotein 1, zinc	protein-coding	0.015000	0.562189	
mm_161963.1	chr19	8404977	8405177	-	1	NA	NA	NA	28	NM_177002	319800	Mm.426083	NM_177002	ENSMUSG00000052562	Slc22a30	AA986766|C730048C13Rik|UST1R	solute carrier family 22, member 30	protein-coding	0.005000	0.358209	-99(TTCCATTAAAAG,-,0.00),-97(CCATTAAAAGTA,+,0.00),-34(AACTTTAAAAGA,-,0.00)
mm_147210.1	chr18	37944956	37945156	-	1	NA	NA	NA	-9580	NM_007858	13367	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0.015000	0.522388	
mm_4009.1	chr1	164960824	164961024	+	1	NA	NA	NA	-25414	NM_008510	16963	Mm.190	NM_008510	ENSMUSG00000026573	Xcl1	AI661682|ATAC|LTN|Lptn|SCM-1|SCM-1a|Scyc1	chemokine (C motif) ligand 1	protein-coding	0.015000	0.437811	
mm_38499.1	chr4	141067165	141067365	-	1	NA	NA	NA	-6720	NM_001145958	230872	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	0.010000	0.552239	
mm_119180.1	chr14	32165790	32165990	+	1	NA	NA	NA	101	NM_019744	27057	Mm.371598	NM_019744	ENSMUSG00000056234	Ncoa4	ARA70|Rfg	nuclear receptor coactivator 4	protein-coding	0.050000	0.522388	
mm_47006.1	chr5	115471986	115472186	-	1	NA	NA	NA	5820	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.025000	0.562189	
mm_67646.1	chr7	84605690	84605890	-	1	NA	NA	NA	152	NM_010176	14085	Mm.3798	NM_010176	ENSMUSG00000030630	Fah	-	fumarylacetoacetate hydrolase	protein-coding	0.060000	0.631841	
mm_123030.1	chr14	55524168	55524368	-	1	NA	NA	NA	-16	NM_008736	18185	Mm.20422	NM_008736	ENSMUSG00000040632	Nrl	D14H14S46E	neural retina leucine zipper gene	protein-coding	0.010000	0.532338	19(CCTTTAAGAGTG,+,0.00)
mm_32706.1	chr4	116075467	116075667	+	1	NA	NA	NA	298	NM_153521	230654	Mm.3655	NM_153521	ENSMUSG00000028703	Lrrc41	AA409966|AW555107|D630045E04Rik|D730026A16Rik|MUF1	leucine rich repeat containing 41	protein-coding	0.120000	0.756219	
mm_138603.1	chr17	35567378	35567578	+	1	NA	NA	NA	-7	NM_175148	69542	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	0.015000	0.547264	
mm_25298.1	chr3	105959319	105959519	+	1	NA	NA	NA	-79	NM_027432	70465	Mm.5110	NM_027432	ENSMUSG00000000561	Wdr77	2610003I18Rik|2610312E17Rik|C79984|p44/MEP50	WD repeat domain 77	protein-coding	0.070000	0.587065	
mm_34633.1	chr4	150614053	150614253	+	1	NA	NA	NA	38021	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.015000	0.532338	
mm_25259.1	chr3	104782229	104782429	+	1	NA	NA	NA	1273	NM_027982	71887	Mm.379204	NM_027982	ENSMUSG00000002228	Ppm1j	2310008J22Rik|PP2Czeta|Ppp2cz	protein phosphatase 1J	protein-coding	0.020000	0.547264	
mm_60055.1	chr7	31149933	31150133	+	1	NA	NA	NA	1017	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.025000	0.492537	
mm_58247.1	chr6	145048620	145048820	-	1	NA	NA	NA	92	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.125000	0.686567	
mm_58486.1	chr7	3629951	3630151	+	1	NA	NA	NA	66	NM_027328	68988	Mm.246863	NM_027328	ENSMUSG00000008373	Prpf31	1500019O16Rik|2810404O06Rik|AW554706|PRP31|RP11	pre-mRNA processing factor 31	protein-coding	0.050000	0.457711	
mm_127432.1	chr15	101270055	101270255	+	1	NA	NA	NA	3309	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.035000	0.606965	
mm_162511.1	chr1	155054675	155054875	-	1	NA	NA	NA	44861	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.005000	0.442786	
mm_53537.1	chr6	136671752	136671952	+	1	NA	NA	NA	-9959	NM_025806	66857	Mm.3311	NM_025806	ENSMUSG00000030214	Plbd1	1100001H23Rik	phospholipase B domain containing 1	protein-coding	0.010000	0.417910	
mm_116250.1	chr13	33965601	33965801	-	1	NA	NA	NA	1042	NM_001163241	18105	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	NAD(P)H dehydrogenase, quinone 2	protein-coding	0.015000	0.393035	
mm_49908.1	chr6	39002591	39002791	+	1	NA	NA	NA	64895	NR_040523	69986	Mm.490941	NR_040523	ENSMUSG00000100121	1700025N23Rik	-	RIKEN cDNA 1700025N23 gene	ncRNA	0.010000	0.378109	
mm_125953.1	chr15	76248983	76249183	+	1	NA	NA	NA	892	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.055000	0.572139	
mm_25471.1	chr3	108744288	108744488	+	1	NA	NA	NA	4730	NM_177859	329738	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	0.005000	0.487562	
mm_158229.1	chrX	106221057	106221257	-	1	NA	NA	NA	1	NM_001167988	407786	Mm.19440	NM_001001176	ENSMUSG00000047242	Taf9b	BC066223|Taf9l	TATA-box binding protein associated factor 9B	protein-coding	0.075000	0.656716	
mm_76817.1	chr8	104509784	104509984	-	1	NA	NA	NA	3	NM_180958	320022	Mm.249775	NM_180958	ENSMUSG00000052616	Terb1	4930532D21Rik|BB085179|Ccdc79	telomere repeat binding bouquet formation protein 1	protein-coding	0.070000	0.681592	
mm_119887.1	chr14	54932950	54933150	+	1	NA	NA	NA	355	NM_080729	140806	Mm.90154	NM_080729	ENSMUSG00000040770	Il25	IL-17e|Il17e	interleukin 25	protein-coding	0.020000	0.582090	
mm_102962.1	chr11	69665290	69665490	-	1	NA	NA	NA	780	NM_001291058	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.010000	0.522388	-98(GGGCTTAAAGAG,-,0.00),-96(GCTTAAAGAGGG,+,0.00)
mm_123346.1	chr14	63141669	63141869	-	1	NA	NA	NA	19307	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.015000	0.522388	
mm_61554.1	chr7	79499043	79499243	+	1	NA	NA	NA	-883	NR_040311	101694	Mm.41661	NR_040311	ENSMUSG00000097023	Mir9-3hg	AI854517	Mir9-3 host gene	ncRNA	0.045000	0.616915	
mm_82832.1	chr9	31149996	31150196	-	1	NA	NA	NA	-18297	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.015000	0.542289	
mm_132659.1	chr16	41680869	41681069	+	1	NA	NA	NA	147627	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.000000	0.313433	
mm_47945.1	chr5	135394429	135394629	-	1	NA	NA	NA	17	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.210000	0.776119	
mm_64156.1	chr7	141338888	141339088	+	1	NA	NA	NA	-14	NM_133191	98845	Mm.27451	NM_133191	ENSMUSG00000025504	Eps8l2	AI042819|AW545405|Eps8r2	EPS8-like 2	protein-coding	0.070000	0.661692	
mm_143370.1	chr17	67354897	67355097	-	1	NA	NA	NA	-538	NM_008984	19274	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.070000	0.646766	
mm_129449.1	chr15	78561129	78561329	-	1	NA	NA	NA	11554	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.020000	0.572139	
mm_167769.1	chr9	111023471	111023671	+	1	NA	NA	NA	4279	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.015000	0.502488	
mm_159880.1	chr6	13224893	13225093	-	1	NA	NA	NA	-28	NM_001013757	232585	Mm.389082	NM_001013757	ENSMUSG00000079679	Vwde	Gm467	von Willebrand factor D and EGF domains	protein-coding	0.020000	0.552239	
mm_147156.1	chr18	36679267	36679467	-	1	NA	NA	NA	-1	NM_146085	225372	Mm.89673	NM_146085	ENSMUSG00000006050	Apbb3	Fe65l2|Rirl2|TR2S	amyloid beta (A4) precursor protein-binding, family B, member 3	protein-coding	0.085000	0.572139	-99(TGGCATTTAAGG,-,0.00),-97(GCATTTAAGGCA,+,0.00)
mm_45430.1	chr5	67098999	67099199	-	1	NA	NA	NA	27	NM_008888	18935	Mm.62505	NM_008888	ENSMUSG00000012520	Phox2b	Dilp1|NBPhox|Pmx2b|Px2b	paired-like homeobox 2b	protein-coding	0.025000	0.507463	
mm_87485.1	chr10	51494034	51494234	+	1	NA	NA	NA	3236	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.005000	0.457711	
mm_18117.1	chr2	44996677	44996877	-	1	NA	NA	NA	26400	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.015000	0.467662	
mm_74357.1	chr8	128358474	128358674	+	1	NA	NA	NA	-499	NM_008737	18186	Mm.271745	NM_008737	ENSMUSG00000025810	Nrp1	C530029I03|NP-1|NPN-1|Npn1|Nrp	neuropilin 1	protein-coding	0.070000	0.597015	
mm_28794.1	chr3	96034149	96034349	-	1	NA	NA	NA	24206	NM_013841	22365	Mm.263185	NM_013841	ENSMUSG00000015747	Vps45	AI462172|AW554165|mVps45	vacuolar protein sorting 45	protein-coding	0.010000	0.477612	-31(CCATTTAGAGAT,+,0.00)
mm_29862.1	chr3	130060744	130060944	-	1	NA	NA	NA	63	NM_207209	99683	Mm.192303	NM_207209	ENSMUSG00000001052	Sec24b	AI605202|SEC24	Sec24 related gene family, member B (S. cerevisiae)	protein-coding	0.155000	0.781095	
mm_135159.1	chr16	35858984	35859184	-	1	NA	NA	NA	12298	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.010000	0.388060	
mm_98738.1	chr11	96365625	96365825	+	1	NA	NA	NA	-33	NM_008266	15407	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0.040000	0.651741	
mm_96395.1	chr11	67250416	67250616	+	1	NA	NA	NA	12704	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.020000	0.487562	-12(TTCTTTAAAGCC,+,0.00),-11(TCTTTAAAGCCG,+,0.00)
mm_22342.1	chr2	180889589	180889789	-	1	NA	NA	NA	-4351	NR_029538	723951		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA	0.025000	0.616915	
mm_118658.1	chr14	21797718	21797918	+	1	NA	NA	NA	-33743	NM_011695	22334	Mm.262327	NM_011695	ENSMUSG00000021771	Vdac2	Vdac6|mVDAC2|mVDAC6	voltage-dependent anion channel 2	protein-coding	0.000000	0.383085	
mm_17117.1	chr2	24475461	24475661	-	1	NA	NA	NA	38	NM_011040	18510	Mm.2533	NM_011040	ENSMUSG00000026976	Pax8	Pax-8	paired box 8	protein-coding	0.035000	0.641791	
mm_4011.1	chr1	165460509	165460709	+	1	NA	NA	NA	-146	NM_028759	74106	Mm.227605	NM_028759	ENSMUSG00000026571	Dcaf6	1200006M05Rik|Iqwd1|PC326	DDB1 and CUL4 associated factor 6	protein-coding	0.085000	0.656716	
mm_160627.1	chr9	101074713	101074913	+	1	NA	NA	NA	51	NM_001100451	77853	Mm.326206	NM_001100451	ENSMUSG00000066415	Msl2	E130103E02Rik|Msl2l1|Rnf184	male-specific lethal 2 homolog (Drosophila)	protein-coding	0.135000	0.721393	
mm_22445.1	chr2	181697715	181697915	-	1	NA	NA	NA	627	NM_199023	277496	Mm.212749	NM_199023	ENSMUSG00000045794	Lkaaear1	4930526D03Rik|Gm692	LKAAEAR motif containing 1 (IKAAEAR murine motif)	protein-coding	0.015000	0.447761	
mm_42958.1	chr5	123076019	123076219	+	1	NA	NA	NA	-156	NM_001039723	330189	Mm.391872	NM_001039723	ENSMUSG00000054434	Tmem120b	-	transmembrane protein 120B	protein-coding	0.040000	0.512438	-44(AGCCATAAATGC,-,0.00)
mm_47759.1	chr5	131308007	131308207	-	1	NA	NA	NA	-585	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Wbscr17	AA388321|E330012B09Rik	Williams-Beuren syndrome chromosome region 17 homolog (human)	protein-coding	0.035000	0.572139	
mm_80970.1	chr9	103111953	103112153	+	1	NA	NA	NA	-21	NM_173781	270192	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.115000	0.781095	
mm_100038.1	chr11	114983746	114983946	+	1	NA	NA	NA	6040	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.010000	0.497512	
mm_18309.1	chr2	53696768	53696968	-	1	NA	NA	NA	388684	NM_023396	67874	Mm.27086	NM_023396	ENSMUSG00000075334	Rprm	2410012A13Rik|Reprimo	reprimo, TP53 dependent G2 arrest mediator candidate	protein-coding	0.010000	0.348259	
mm_129946.1	chr15	84960857	84961057	-	1	NA	NA	NA	-9334	NR_037206	100526461		NR_037206	ENSMUSG00000080441	Mir1249	mir-1249|mmu-mir-1249	microRNA 1249	ncRNA	0.015000	0.567164	
mm_21262.1	chr2	156722291	156722491	-	1	NA	NA	NA	1112	NM_001042487	228836	Mm.22094	NM_146128	ENSMUSG00000061689	Dlgap4	AI225853|BC024558|DAP-4|DAP4|SAPAP-4|Sapap4|WBP16	discs, large homolog-associated protein 4 (Drosophila)	protein-coding	0.025000	0.582090	
mm_55190.1	chr6	52191230	52191430	-	1	NA	NA	NA	373	NM_008265	15401	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	0.150000	0.845771	
mm_43580.1	chr5	137746545	137746745	+	1	NA	NA	NA	676	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.020000	0.532338	
mm_61828.1	chr7	88221832	88222032	+	1	NA	NA	NA	-56153	NM_009982	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.000000	0.258706	
mm_115522.1	chr13	5861065	5861265	-	1	NA	NA	NA	-324	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.095000	0.651741	-65(GGGTATATAAGG,-,0.00)
mm_166668.1	chr6	90905612	90905812	+	1	NA	NA	NA	-95589	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.120000	0.721393	
mm_36056.1	chr4	57338978	57339178	-	1	NA	NA	NA	25214	NR_038179	73349	Mm.393774	NR_038178		1700042G15Rik	-	RIKEN cDNA 1700042G15 gene	ncRNA	0.035000	0.477612	
mm_112142.1	chr12	113147415	113147615	-	1	NA	NA	NA	-4497	NM_007763	12925	Mm.272368	NM_007763	ENSMUSG00000006360	Crip1	CRHP|CRP1|Crip	cysteine-rich protein 1 (intestinal)	protein-coding	0.010000	0.547264	
mm_53414.1	chr6	133105180	133105380	+	1	NA	NA	NA	41	NR_073368	381820	Mm.291762	NM_001163445	ENSMUSG00000072704	Smim10l1	2700089E24Rik|AI662692	small integral membrane protein 10 like 1	protein-coding	0.105000	0.706468	
mm_86259.1	chr9	121591936	121592136	-	1	NA	NA	NA	5016	NR_040740	75384	Mm.445955	NR_040740	ENSMUSG00000084995	Lyzl4os	4930589B17Rik|4930596M17Rik	lysozyme-like 4, opposite strand	ncRNA	0.005000	0.482587	
mm_125767.1	chr15	74563288	74563488	+	1	NA	NA	NA	47192	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0.020000	0.601990	
mm_43619.1	chr5	138116849	138117049	+	1	NA	NA	NA	44	NM_001044705	22697	Mm.2760	NM_011757	ENSMUSG00000037017	Zscan21	AI326272|CTfin51|RU49|Zfp-38|Zfp38|Zipro1	zinc finger and SCAN domain containing 21	protein-coding	0.085000	0.621891	
mm_154018.1	chr19	53313162	53313362	-	1	NA	NA	NA	2756	NM_001008542	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	ENSMUSG00000067085|Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.065000	0.661692	
mm_102864.1	chr11	69405177	69405377	-	1	NA	NA	NA	-7043	NM_025915	67020	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.020000	0.592040	
mm_34987.1	chr4	156027073	156027273	+	1	NA	NA	NA	831	NM_021985	21936	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	0.005000	0.452736	
mm_148961.1	chr19	7493951	7494151	+	1	NA	NA	NA	11	NM_001163505	109168	Mm.264016	NM_146091	ENSMUSG00000024759	Atl3	4633402C03Rik|5730596K20Rik|AI465397|AW228836	atlastin GTPase 3	protein-coding	0.080000	0.616915	
mm_106586.1	chr11	120729585	120729785	-	1	NA	NA	NA	2336	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.040000	0.597015	
mm_28883.1	chr3	97867972	97868172	-	1	NA	NA	NA	20635	NM_001289702	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.070000	0.621891	
mm_58123.1	chr6	140041375	140041575	-	1	NA	NA	NA	-50	NM_007605	12344	Mm.12817	NM_007605	ENSMUSG00000041791	Capza3	510-4|Cappa3|Gsg3|Tex8|repro32	capping protein (actin filament) muscle Z-line, alpha 3	protein-coding	0.010000	0.442786	
mm_42715.1	chr5	120441203	120441403	+	1	NA	NA	NA	9417	NM_008499	16873	Mm.5151	NM_008499	ENSMUSG00000029595	Lhx5	Lim2	LIM homeobox protein 5	protein-coding	0.000000	0.308458	
mm_130325.1	chr15	97680359	97680559	-	1	NA	NA	NA	25363	NM_028003	71919	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.035000	0.597015	
mm_126988.1	chr15	94544164	94544364	+	1	NA	NA	NA	604	NM_029926	266632	Mm.422858	NM_029926	ENSMUSG00000059883	Irak4	8430405M07Rik|9330209D03Rik|IRAK-4|NY-REN-64	interleukin-1 receptor-associated kinase 4	protein-coding	0.015000	0.363184	
mm_100805.1	chr11	5063769	5063969	-	1	NA	NA	NA	1458	NM_144560	78926	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0.055000	0.597015	
mm_22057.1	chr2	168590197	168590397	-	1	NA	NA	NA	68	NM_001291178	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.115000	0.721393	
mm_87998.1	chr10	66968681	66968881	+	1	NA	NA	NA	-36294	NR_110511	102634101	Mm.445258	NR_110511		Gm31763	-	predicted gene, 31763	ncRNA	0.015000	0.522388	-33(CACTATAAAGGA,-,0.00)
mm_62827.1	chr7	113513997	113514197	+	1	NA	NA	NA	263	NM_027379	67420	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.115000	0.786070	
mm_65540.1	chr7	26188046	26188246	-	1	NA	NA	NA	14737	NM_010000	13094	Mm.14413	NM_010000	ENSMUSG00000040660	Cyp2b9	Cyp2b	cytochrome P450, family 2, subfamily b, polypeptide 9	protein-coding	0.000000	0.293532	
mm_110980.1	chr12	77056871	77057071	-	1	NA	NA	NA	-94723	NM_001146176	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.005000	0.522388	
mm_153857.1	chr19	46500843	46501043	-	1	NA	NA	NA	-705	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.090000	0.562189	
mm_52783.1	chr6	121256788	121256988	+	1	NA	NA	NA	10982	NM_011909	24110	Mm.326911	NM_011909	ENSMUSG00000030107	Usp18	1110058H21Rik|AW047653|UBP43|Ubp15	ubiquitin specific peptidase 18	protein-coding	0.015000	0.447761	
mm_63452.1	chr7	127512350	127512550	+	1	NA	NA	NA	419	NR_024331	629159	Mm.256720	NR_024331	ENSMUSG00000101225	1700008J07Rik	AW048743	RIKEN cDNA 1700008J07 gene	ncRNA	0.135000	0.781095	
mm_68695.1	chr7	119615614	119615814	-	1	NA	NA	NA	-2114	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.005000	0.318408	
mm_124953.1	chr15	12833462	12833662	+	1	NA	NA	NA	8747	NM_001130149	14000	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	0.110000	0.606965	
mm_16388.1	chr2	178494262	178494462	+	1	NA	NA	NA	63847	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.030000	0.597015	
mm_30698.1	chr4	11694739	11694939	+	1	NA	NA	NA	-9608	NM_010276	14579	Mm.247486	NM_010276	ENSMUSG00000028214	Gem	AV020497	GTP binding protein (gene overexpressed in skeletal muscle)	protein-coding	0.015000	0.522388	
mm_160501.1	chr9	15307626	15307826	+	1	NA	NA	NA	-1278	NM_001199484	70984	Mm.261842	NM_133732	ENSMUSG00000031938	4931406C07Rik	-	RIKEN cDNA 4931406C07 gene	protein-coding	0.015000	0.417910	
mm_52727.1	chr6	120112622	120112822	+	1	NA	NA	NA	19342	NM_016718	29862	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.015000	0.482587	
mm_9359.1	chr1	172197971	172198171	-	1	NA	NA	NA	8733	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.010000	0.522388	
mm_19194.1	chr2	84434194	84434394	-	1	NA	NA	NA	-9028	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.010000	0.383085	
mm_64439.1	chr7	142653550	142653750	+	1	NA	NA	NA	1346	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.015000	0.522388	
mm_4739.1	chr1	181853174	181853374	+	1	NA	NA	NA	-10873	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.030000	0.621891	
mm_13888.1	chr2	120033338	120033538	+	1	NA	NA	NA	5	NM_145378	211429	Mm.41467	NM_145378	ENSMUSG00000098488	Pla2g4b	A030011C02Rik|Gm1013|cPLA2-beta	phospholipase A2, group IVB (cytosolic)	protein-coding	0.010000	0.552239	
mm_27388.1	chr3	50628427	50628627	-	1	NA	NA	NA	-184914	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.025000	0.497512	
mm_85971.1	chr9	112157281	112157481	-	1	NA	NA	NA	28568	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.025000	0.557214	
mm_8593.1	chr1	156006122	156006322	-	1	NA	NA	NA	28595	NM_001160019	208263	Mm.211654	NM_144791	ENSMUSG00000026466	Tor1aip1	LAP1|Lap1B	torsin A interacting protein 1	protein-coding	0.020000	0.402985	28(GTCTTTAAAAAA,-,0.00)
mm_126655.1	chr15	84192174	84192374	+	1	NA	NA	NA	41	NM_178614	68653	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0.070000	0.631841	
mm_92919.1	chr10	84440411	84440611	-	1	NA	NA	NA	-40	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.140000	0.756219	
mm_158123.1	chrX	102505055	102505255	-	1	NA	NA	NA	3	NM_001313742	70315	Mm.328128	NM_027382	ENSMUSG00000067567	Hdac8	2610007D20Rik	histone deacetylase 8	protein-coding	0.035000	0.572139	
mm_87287.1	chr10	42349776	42349976	+	1	NA	NA	NA	-73134	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.005000	0.348259	
mm_59893.1	chr7	30307119	30307319	+	1	NA	NA	NA	-1534	NM_198027	233065	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	0.005000	0.467662	
mm_91789.1	chr10	53349696	53349896	-	1	NA	NA	NA	12110	NM_001141927	18821	Mm.34145	NM_023129	ENSMUSG00000038583	Pln	Plb	phospholamban	protein-coding	0.005000	0.507463	
mm_113232.1	chr13	27243688	27243888	+	1	NA	NA	NA	1358	NM_008865	18776	Mm.37203	NM_008865	ENSMUSG00000038891	Prl3b1	Csh2|Ghd8|PL|Pl-2|Pl2|mPL-II|mplII	prolactin family 3, subfamily b, member 1	protein-coding	0.015000	0.442786	-55(CTCTTTATAGCT,+,0.00)
mm_105149.1	chr11	101462452	101462652	-	1	NA	NA	NA	3647	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.045000	0.577114	
mm_78810.1	chr9	44068057	44068257	+	1	NA	NA	NA	1136	NM_198092	53376	Mm.272770	NM_016808	ENSMUSG00000032010	Usp2	B930035K21Rik|Ubp41	ubiquitin specific peptidase 2	protein-coding	0.020000	0.587065	
mm_114412.1	chr13	64276160	64276360	+	1	NA	NA	NA	-1272	NM_172587	218294	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	0.005000	0.398010	
mm_18775.1	chr2	73529457	73529657	-	1	NA	NA	NA	-70	NM_153138	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.140000	0.781095	
mm_72777.1	chr8	86624013	86624213	+	1	NA	NA	NA	70	NM_025827	66887	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding	0.090000	0.691542	
mm_55321.1	chr6	55174928	55175128	-	1	NA	NA	NA	-38	NM_009349	21743	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	0.000000	0.497512	-45(TCTTATAAAAAG,-,0.00),-34(GATTATAAAAGG,-,0.00)
mm_72870.1	chr8	88662465	88662665	+	1	NA	NA	NA	15218	NM_145857	257632	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0.020000	0.532338	
mm_130175.1	chr15	93336808	93337008	-	1	NA	NA	NA	27	NR_028315	67057	Mm.4714	NM_024189	ENSMUSG00000022634	Yaf2	2810021M11Rik	YY1 associated factor 2	protein-coding	0.190000	0.820896	
mm_12957.1	chr2	90373097	90373297	+	1	NA	NA	NA	-27443	NM_146263	258330	Mm.330392	NM_146263	ENSMUSG00000082980	Olfr1274-ps	GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274	olfactory receptor 1274, pseudogene	protein-coding	0.095000	0.502488	
mm_40137.1	chr5	35056773	35056973	+	1	NA	NA	NA	-211	NM_172708	231134	Mm.205483	NM_172708	ENSMUSG00000044716	Dok7	A930013K19Rik|AW049091|Dok-7|EF-12|Oit5	docking protein 7	protein-coding	0.100000	0.721393	
mm_111435.1	chr12	91849018	91849218	-	1	NA	NA	NA	39	NM_001039089	20338	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0.125000	0.706468	
mm_48673.1	chr5	146009608	146009808	-	1	NA	NA	NA	-90	NR_030782	56388	Mm.301900	NM_019792	ENSMUSG00000029630	Cyp3a25	AI327008	cytochrome P450, family 3, subfamily a, polypeptide 25	protein-coding	0.005000	0.467662	
mm_134608.1	chr16	20717130	20717330	-	1	NA	NA	NA	-594	NM_009900	12724	Mm.177761	NM_009900	ENSMUSG00000022843	Clcn2	AL118368|ClC-2|Clc2|nmf240	chloride channel, voltage-sensitive 2	protein-coding	0.040000	0.601990	
mm_168208.1	chr10	72309106	72309306	+	1	NA	NA	NA	-328516	NR_003644	108950	Mm.212793	NM_175390	ENSMUSG00000043859	1700049L16Rik	-	hematological and neurological expressed 1-like pseudogene	pseudo	0.065000	0.537313	
mm_27325.1	chr3	50367637	50367837	-	1	NA	NA	NA	75876	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.338308	
mm_30570.1	chr4	3792513	3792713	+	1	NA	NA	NA	43042	NM_026147	67427	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.000000	0.343284	
mm_169923.1	chr16	57391277	57391477	-	1	NA	NA	NA	38100	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.075000	0.557214	
mm_23102.1	chr3	37348581	37348781	+	1	NA	NA	NA	28	NM_008006	14173	Mm.473689	NM_008006	ENSMUSG00000037225	Fgf2	Fgf-2|Fgfb|bFGF	fibroblast growth factor 2	protein-coding	0.130000	0.796020	
mm_50550.1	chr6	49047215	49047415	+	1	NA	NA	NA	10797	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.025000	0.442786	
mm_135937.1	chr16	74279335	74279535	-	1	NA	NA	NA	62632	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.005000	0.343284	56(ACTTATATACAC,+,0.00)
mm_98867.1	chr11	97799230	97799430	+	1	NA	NA	NA	-342	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.060000	0.631841	
mm_18924.1	chr2	76743720	76743920	-	1	NA	NA	NA	68505	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.427861	
mm_38997.1	chr4	151154380	151154580	-	1	NA	NA	NA	64910	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	OTTMUSG00000010356	predicted gene 13090	protein-coding	0.010000	0.487562	
mm_91010.1	chr10	14747282	14747482	-	1	NA	NA	NA	-12907	NM_008703	18101	Mm.487342	NM_008703	ENSMUSG00000019865	Nmbr	BB182387	neuromedin B receptor	protein-coding	0.035000	0.427861	
mm_74293.1	chr8	125995062	125995262	+	1	NA	NA	NA	60	NM_008430	16525	Mm.10800	NM_008430	ENSMUSG00000033998	Kcnk1	AI788889|TWIK-1	potassium channel, subfamily K, member 1	protein-coding	0.060000	0.646766	
mm_30731.1	chr4	13790650	13790850	+	1	NA	NA	NA	5968	NM_009822	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.005000	0.388060	
mm_44080.1	chr5	149136971	149137171	+	1	NA	NA	NA	-7192	NR_137278	105242579	Mm.445929	NR_137278	ENSMUSG00000107388	Gm42788	-	predicted gene 42788	ncRNA	0.015000	0.527363	
mm_119080.1	chr14	30886318	30886518	+	1	NA	NA	NA	-58	NM_001159299	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.010000	0.532338	
mm_28903.1	chr3	98339833	98340033	-	1	NA	NA	NA	36	NM_016966	236539	Mm.16898	NM_016966	ENSMUSG00000053398	Phgdh	3-PGDH|3PGDH|4930479N23|A10|PGAD|PGD|PGDH|SERA	3-phosphoglycerate dehydrogenase	protein-coding	0.035000	0.572139	
mm_50072.1	chr6	41281186	41281386	+	1	NA	NA	NA	-20986	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.005000	0.373134	
mm_77296.1	chr8	116993348	116993548	-	1	NA	NA	NA	1	NM_026572	68133	Mm.258462	NM_026572	ENSMUSG00000034424	Gcsh	1100001L02Rik|5730591C18Rik	glycine cleavage system protein H (aminomethyl carrier)	protein-coding	0.105000	0.716418	
mm_117358.1	chr13	70028249	70028449	-	1	NA	NA	NA	-1	NR_045965	74280	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA	0.005000	0.482587	
mm_10993.1	chr2	26319649	26319849	+	1	NA	NA	NA	-21	NM_001199147	67839	Mm.266611	NM_153410	ENSMUSG00000026930	Gpsm1	1810037C22Rik|AW107933|Ags3	G-protein signalling modulator 1 (AGS3-like, C. elegans)	protein-coding	0.025000	0.577114	
mm_107021.1	chr12	12784575	12784775	+	1	NA	NA	NA	-114758	NR_136889	102637952	Mm.421393	NR_136889		Gm34637	-	predicted gene, 34637	ncRNA	0.005000	0.522388	
mm_127299.1	chr15	100202004	100202204	+	1	NA	NA	NA	-14068	NR_037311	100499528		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0.015000	0.497512	
mm_68373.1	chr7	108924293	108924493	-	1	NA	NA	NA	5765	NM_175532	244202	Mm.37991	NM_175532	ENSMUSG00000049709	Nlrp10	6430548I20Rik|Nalp10|Napl10|PAN5|Pynod	NLR family, pyrin domain containing 10	protein-coding	0.010000	0.497512	
mm_105768.1	chr11	109611322	109611522	-	1	NA	NA	NA	-33	NM_145940	52639	Mm.35817	NM_145940	ENSMUSG00000041895	Wipi1	4930533H01Rik|AW411817|D11Ertd498e	WD repeat domain, phosphoinositide interacting 1	protein-coding	0.105000	0.706468	
mm_136569.1	chr17	3397131	3397331	+	1	NA	NA	NA	24	NM_011878	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.025000	0.472637	
mm_120712.1	chr14	72584565	72584765	+	1	NA	NA	NA	125338	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.030000	0.507463	-1(CCTTTTATGAGT,+,0.00)
mm_22052.1	chr2	168508097	168508297	-	1	NA	NA	NA	82168	NM_001291178	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.010000	0.417910	
mm_37121.1	chr4	116651555	116651755	-	1	NA	NA	NA	19	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.055000	0.582090	
mm_119680.1	chr14	53042257	53042457	+	1	NA	NA	NA	-546662	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.005000	0.462687	
mm_80315.1	chr9	74861780	74861980	+	1	NA	NA	NA	-41	NM_008262	15379	Mm.303355	NM_008262	ENSMUSG00000043013	Onecut1	D9Ertd423e|HNF-6|Hfh12|Hnf6|Hnf6b|OC-1|Oc1	one cut domain, family member 1	protein-coding	0.150000	0.756219	
mm_59567.1	chr7	28093493	28093693	+	1	NA	NA	NA	22357	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.045000	0.606965	
mm_28649.1	chr3	95228512	95228712	-	1	NA	NA	NA	65	NM_019914	56772	Mm.331208	NM_019914	ENSMUSG00000053192	Mllt11	AI839562|Af1q|Zfp692	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 11	protein-coding	0.095000	0.681592	
mm_157508.1	chrX	49084346	49084546	-	1	NA	NA	NA	203796	NM_001271449	209224	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	0.005000	0.422886	
mm_159345.1	chr3	63295946	63296146	+	1	NA	NA	NA	-49	NM_001289463	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.100000	0.736318	
mm_99125.1	chr11	100206654	100206854	+	1	NA	NA	NA	-724	NM_001313957	16664	Mm.439898	NM_016958	ENSMUSG00000045545	Krt14	AI626930|CK-14|K14|Krt-1.14|Krt1-14	keratin 14	protein-coding	0.010000	0.527363	-34(GCACATAAAAGC,-,0.00)
mm_62077.1	chr7	92875175	92875375	+	1	NA	NA	NA	22	NM_028243	72461	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.045000	0.631841	
mm_61521.1	chr7	78913838	78914038	+	1	NA	NA	NA	173	NM_020583	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.010000	0.542289	
mm_147851.1	chr18	63692197	63692397	-	1	NA	NA	NA	62	NM_016792	53382	Mm.19169	NM_016792	ENSMUSG00000024583	Txnl1	32kDa|TRP32|Txnl	thioredoxin-like 1	protein-coding	0.125000	0.736318	
mm_50541.1	chr6	49046084	49046284	+	1	NA	NA	NA	9666	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.005000	0.373134	-82(AACCATAAAAGG,-,0.00)
mm_94587.1	chr11	11719669	11719869	+	1	NA	NA	NA	29592	NM_001301863	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.005000	0.547264	-62(GGACTTTTAAGG,-,0.00),-61(GACTTTTAAGGG,-,0.00),-60(ACTTTTAAGGGA,+,0.00),-59(CTTTTAAGGGAG,+,0.00)
mm_139425.1	chr17	53491278	53491478	+	1	NA	NA	NA	12144	NM_025887	271457	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0.015000	0.452736	
mm_144218.1	chr18	9746578	9746778	+	1	NA	NA	NA	39030	NM_130449	140792	Mm.218571	NM_130449	ENSMUSG00000036103	Colec12	CL-P1|SRCL|Scara4	collectin sub-family member 12	protein-coding	0.000000	0.338308	87(CACCTTAAAAGA,-,0.00),89(CCTTAAAAGAGC,+,0.00)
mm_89483.1	chr10	93640920	93641120	+	1	NA	NA	NA	-29	NM_021320	57764	Mm.483868	NM_021320	ENSMUSG00000020019	Ntn4	-	netrin 4	protein-coding	0.100000	0.701493	
mm_40139.1	chr5	35098057	35098257	+	1	NA	NA	NA	7540	NM_013587	16976	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.020000	0.537313	
mm_48531.1	chr5	142903821	142904021	-	1	NA	NA	NA	2833	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.020000	0.542289	
mm_171387.1	chr4	12136375	12136575	-	1	NA	NA	NA	-3642	NM_028226	72397	Mm.430709	NM_028226	ENSMUSG00000046667	Rbm12b1	3000004N20Rik|Rbm12b|Rbm12ba	RNA binding motif protein 12 B1	protein-coding	0.020000	0.562189	
mm_73169.1	chr8	95020704	95020904	+	1	NA	NA	NA	3112	NM_173036	54672	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.020000	0.636816	
mm_75132.1	chr8	34965573	34965773	-	1	NA	NA	NA	17	NM_175091	21951	Mm.88364	NM_175091	ENSMUSG00000031529	Tnks	4930554K12Rik|AI662855|ARTD5|C86528|D130072O21Rik|TANK1|mTNKS1	tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase	protein-coding	0.095000	0.646766	
mm_6103.1	chr1	64030168	64030368	-	1	NA	NA	NA	12233	NR_105864	102466760		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.005000	0.437811	
mm_111302.1	chr12	85638934	85639134	-	1	NA	NA	NA	39016	NM_001205053	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.020000	0.552239	20(TCTTTTATGCTC,+,0.00)
mm_115960.1	chr13	23763408	23763608	-	1	NA	NA	NA	-160	NM_030609	80838	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	0.050000	0.562189	
mm_102487.1	chr11	60222665	60222865	-	1	NA	NA	NA	-2138	NM_001313979	20787	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP-1a|SREBP1|SREBP1c|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.075000	0.656716	
mm_9203.1	chr1	171229581	171229781	-	1	NA	NA	NA	4627	NM_013474	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.010000	0.452736	
mm_73674.1	chr8	111536072	111536272	+	1	NA	NA	NA	-468	NM_001168622	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.045000	0.547264	
mm_117104.1	chr13	60175115	60175315	-	1	NA	NA	NA	2320	NM_008086	14451	Mm.22701	NM_008086	ENSMUSG00000052957	Gas1	AW554192|Gas-1	growth arrest specific 1	protein-coding	0.025000	0.472637	
mm_4591.1	chr1	178336020	178336220	+	1	NA	NA	NA	1664	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.045000	0.442786	57(CCGCCTTAAAGC,-,0.00)
mm_13817.1	chr2	119237305	119237505	+	1	NA	NA	NA	45	NM_016907	20732	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	0.110000	0.706468	
mm_62393.1	chr7	101092744	101092944	+	1	NA	NA	NA	-15931	NM_001146010	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.025000	0.567164	
mm_88733.1	chr10	80249043	80249243	+	1	NA	NA	NA	-309	NM_029272	75406	Mm.28712	NM_029272	ENSMUSG00000020153	Ndufs7	1010001M04Rik	NADH dehydrogenase (ubiquinone) Fe-S protein 7	protein-coding	0.080000	0.547264	
mm_49196.1	chr6	15196937	15197137	+	1	NA	NA	NA	11531	NM_001286607	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.010000	0.442786	
mm_158236.1	chrX	106485137	106485337	-	1	NA	NA	NA	-8	NM_001007580	333564	Mm.298000	NM_001007580	ENSMUSG00000033737	Fndc3c1	Fndc3c|Gm784	fibronectin type III domain containing 3C1	protein-coding	0.045000	0.577114	
mm_134852.1	chr16	28219734	28219934	-	1	NA	NA	NA	226241	NM_183064	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.005000	0.417910	-71(GTTTATATACCC,+,0.00)
mm_101701.1	chr11	40755145	40755345	-	1	NA	NA	NA	41	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.070000	0.621891	
mm_22858.1	chr3	28695624	28695824	+	1	NA	NA	NA	-2179	NM_031197	20526	Mm.18443	NM_031197	ENSMUSG00000027690	Slc2a2	AI266973|Glut-2|Glut2	solute carrier family 2 (facilitated glucose transporter), member 2	protein-coding	0.030000	0.507463	
mm_30693.1	chr4	11573519	11573719	+	1	NA	NA	NA	-6043	NM_001256142	100503583	Mm.249437	NM_001256142	ENSMUSG00000094595	Fsbp	-	fibrinogen silencer binding protein	protein-coding	0.000000	0.313433	
mm_112182.1	chr12	113422115	113422315	-	1	NA	NA	NA	-67350	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.050000	0.527363	
mm_88443.1	chr10	77547069	77547269	+	1	NA	NA	NA	16821	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.030000	0.557214	
mm_163961.1	chr14	54966186	54966386	-	1	NA	NA	NA	321	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.025000	0.532338	
mm_73546.1	chr8	108811990	108812190	+	1	NA	NA	NA	97446	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.010000	0.502488	
mm_148183.1	chr18	78206302	78206502	-	1	NA	NA	NA	38	NM_001110274	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.020000	0.512438	
mm_72688.1	chr8	84969527	84969727	+	1	NA	NA	NA	5	NM_011563	21672	Mm.347009	NM_011563	ENSMUSG00000005161	Prdx2	AL022839|Band-8|NkefB|PRP|PrxII|TDX1|TPx|TPx-B|TR|TSA|Tdpx1|Torin	peroxiredoxin 2	protein-coding	0.090000	0.656716	33(ACGCATAAAAGG,-,0.00)
mm_138.1	chr1	10880188	10880388	+	1	NA	NA	NA	-14414	NR_030645	100124448		NR_030645	ENSMUSG00000076948	Mir467e	Mirn467e	microRNA 467e	ncRNA	0.020000	0.467662	-32(CCATATAAAAAC,-,0.00)
mm_114328.1	chr13	60636448	60636648	+	1	NA	NA	NA	34337	NM_134062	69635	Mm.24103	NM_029653	ENSMUSG00000021559	Dapk1	D13Ucla1|DAP-Kinase	death associated protein kinase 1	protein-coding	0.010000	0.512438	
mm_66514.1	chr7	45103114	45103314	-	1	NA	NA	NA	608	NM_010189	14132	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0.020000	0.462687	
mm_93399.1	chr10	107719797	107719997	-	1	NA	NA	NA	130	NM_001081432	237523	Mm.391418	NM_001081432	ENSMUSG00000035916	Ptprq	-	protein tyrosine phosphatase, receptor type, Q	protein-coding	0.005000	0.343284	
mm_24166.1	chr3	88537271	88537471	+	1	NA	NA	NA	-989	NR_035434	100316808		NR_035434	ENSMUSG00000084728	Mir1905	Mirn1905|mmu-mir-1905	microRNA 1905	ncRNA	0.010000	0.522388	
mm_109668.1	chr12	113050435	113050635	+	1	NA	NA	NA	-23967	NM_029381	75671	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0.015000	0.517413	
mm_122353.1	chr14	38880908	38881108	-	1	NA	NA	NA	-17294	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA	0.000000	0.383085	
mm_148340.1	chr18	84589373	84589573	-	1	NA	NA	NA	31	NM_001033341	240476	Mm.329575	NM_001033341	ENSMUSG00000048410	Zfp407	6430585N13Rik|Gm333|Gm334|Gm948|ZNF407	zinc finger protein 407	protein-coding	0.110000	0.701493	
mm_153441.1	chr19	40994119	40994319	-	1	NA	NA	NA	316	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.030000	0.547264	
mm_63951.1	chr7	139894782	139894982	+	1	NA	NA	NA	186	NM_177261	76484	Mm.44442	NM_177261	ENSMUSG00000066129	Kndc1	2410012C07Rik|B830014K08Rik|VKIND|very-kind	kinase non-catalytic C-lobe domain (KIND) containing 1	protein-coding	0.105000	0.731343	
mm_29749.1	chr3	126998432	126998632	-	1	NA	NA	NA	-80	NM_178655	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.020000	0.527363	
mm_91699.1	chr10	44004218	44004418	-	1	NA	NA	NA	528	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.095000	0.736318	
mm_37941.1	chr4	133070800	133071000	-	1	NA	NA	NA	59394	NM_146155	230793	Mm.31816	NM_146155	ENSMUSG00000037692	Ahdc1	D030015G18Rik	AT hook, DNA binding motif, containing 1	protein-coding	0.010000	0.507463	
mm_68993.1	chr7	126625855	126626055	-	1	NA	NA	NA	-485	NM_019738	56312	Mm.18742	NM_019738	ENSMUSG00000030717	Nupr1	2310032H04Rik|Com1|p8	nuclear protein transcription regulator 1	protein-coding	0.000000	0.492537	
mm_58700.1	chr7	12927295	12927495	+	1	NA	NA	NA	-21	NM_029809	381845	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0.020000	0.537313	
mm_3681.1	chr1	153696393	153696593	+	1	NA	NA	NA	30820	NM_001347115	67792	Mm.379143	NM_026380	ENSMUSG00000042671	Rgs8	6530413N01Rik	regulator of G-protein signaling 8	protein-coding	0.025000	0.522388	
mm_80373.1	chr9	75406923	75407123	+	1	NA	NA	NA	2336	NM_027418	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.005000	0.487562	
mm_110183.1	chr12	27337518	27337718	-	1	NA	NA	NA	5100	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.005000	0.373134	
mm_91958.1	chr10	61146230	61146430	-	1	NA	NA	NA	1354	NM_009163	20397	Mm.412319	NM_009163	ENSMUSG00000020097	Sgpl1	AI428538|D10Xrf456|S1PL|Spl	sphingosine phosphate lyase 1	protein-coding	0.090000	0.691542	
mm_86892.1	chr10	22301754	22301954	+	1	NA	NA	NA	-4866	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.000000	0.467662	-97(CCTTAACTAGGC,+,0.00)
mm_50907.1	chr6	57582501	57582701	+	1	NA	NA	NA	1609	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.020000	0.442786	62(GTCCATAAAAAC,-,0.00)
mm_39630.1	chr5	24430624	24430824	+	1	NA	NA	NA	3203	NM_001253892	20535	Mm.4580	NM_009207	ENSMUSG00000028962	Slc4a2	Ae2|B3RP	solute carrier family 4 (anion exchanger), member 2	protein-coding	0.010000	0.532338	
mm_24162.1	chr3	88531850	88532050	+	1	NA	NA	NA	-445	NM_001029890	72640	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0.085000	0.661692	
mm_64274.1	chr7	141808428	141808628	+	1	NA	NA	NA	19517	NM_010844	17833	Mm.334332	NM_010844	ENSMUSG00000037974	Muc5ac	2210005L13Rik|MGM	mucin 5, subtypes A and C, tracheobronchial/gastric	protein-coding	0.010000	0.567164	
mm_103488.1	chr11	76509328	76509528	-	1	NA	NA	NA	-9	NM_198018	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.035000	0.527363	-34(CCCTATAAAAAG,-,0.00)
mm_173365.1	chrY	90819797	90819997	+	1	NA	NA	NA	19509	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.005000	0.477612	
mm_46320.1	chr5	100679987	100680187	-	1	NA	NA	NA	-5831	NM_027978	71883	Mm.260661	NM_027978	ENSMUSG00000029319	Coq2	2310002F18Rik|PHB:PPT	coenzyme Q2 4-hydroxybenzoate polyprenyltransferase	protein-coding	0.010000	0.492537	-31(GCCTCTAAATGA,-,0.00)
mm_94019.1	chr10	127666511	127666711	-	1	NA	NA	NA	92	NM_001122895	17937	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0.120000	0.756219	
mm_25687.1	chr3	122245516	122245716	+	1	NA	NA	NA	59	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.145000	0.736318	
mm_166832.1	chr7	18925898	18926098	+	1	NA	NA	NA	110	NM_001029877	384569	Mm.262724	NM_001029877	ENSMUSG00000030411	Nova2	Gm1424	neuro-oncological ventral antigen 2	protein-coding	0.170000	0.860697	
mm_63362.1	chr7	127046809	127047009	+	1	NA	NA	NA	-4489	NM_145588	110033	Mm.286488	NM_145588	ENSMUSG00000030677	Kif22	AU021460|C81217|Kid|Kif22a	kinesin family member 22	protein-coding	0.000000	0.442786	
mm_5930.1	chr1	55362582	55362782	-	1	NA	NA	NA	25	NM_001113367	75388	Mm.483408	NM_029267	ENSMUSG00000025977	Boll	4930554P13Rik|4930597B14Rik	bol, boule-like (Drosophila)	protein-coding	0.095000	0.671642	
mm_60553.1	chr7	44480992	44481192	+	1	NA	NA	NA	-3425	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.005000	0.477612	
mm_70059.1	chr7	142651528	142651728	-	1	NA	NA	NA	3368	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.015000	0.626866	
mm_161482.1	chr15	82620830	82621030	-	1	NA	NA	NA	-23	NM_145474	223706	Mm.436843	NM_145474	ENSMUSG00000094559	Cyp2d34	-	cytochrome P450, family 2, subfamily d, polypeptide 34	protein-coding	0.000000	0.497512	-47(TCCTTTATAAGG,-,0.00),-45(CTTTATAAGGTG,+,0.00),-21(CCTTATAAAGGA,+,0.00)
mm_118611.1	chr14	20967166	20967366	+	1	NA	NA	NA	37833	NM_009502	22330	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0.005000	0.383085	
mm_111775.1	chr12	104044339	104044539	-	1	NA	NA	NA	4	NM_026535	68054	Mm.20286	NM_026535	ENSMUSG00000041567	Serpina12	4632419J12Rik	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12	protein-coding	0.020000	0.572139	
mm_130785.1	chr15	101573767	101573967	-	1	NA	NA	NA	37	NM_133357	109052	Mm.106868	NM_133357	ENSMUSG00000022986	Krt75	4732468K03Rik|AA589387|K6hf|Krt2-6hf|Krtcap1	keratin 75	protein-coding	0.045000	0.582090	-73(GCCCATAAAAGT,-,0.00)
mm_116341.1	chr13	38503452	38503652	-	1	NA	NA	NA	24362	NM_001289599	105245	Mm.28622	NM_145367	ENSMUSG00000038991	Txndc5	AL022641|ERp46|PC-TRP	thioredoxin domain containing 5	protein-coding	0.020000	0.527363	32(CTCTCTAAAAAG,-,0.00)
mm_29076.1	chr3	103868056	103868256	-	1	NA	NA	NA	7879	NM_008979	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.010000	0.417910	-27(CCTTTTAAGTCT,+,0.00)
mm_145114.1	chr18	44270044	44270244	+	1	NA	NA	NA	17	NM_010935	18169	Mm.57234	NM_010935	ENSMUSG00000038071	Npy6r	-	neuropeptide Y receptor Y6	protein-coding	0.010000	0.477612	
mm_50729.1	chr6	52368154	52368354	+	1	NA	NA	NA	-53422	NR_038163	70593	Mm.158412	NR_038163	ENSMUSG00000086126	Evx1os	5730457N03Rik|Evx1as	even skipped homeotic gene 1, opposite strand	ncRNA	0.025000	0.467662	
mm_69120.1	chr7	127026165	127026365	-	1	NA	NA	NA	214	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.085000	0.726368	
mm_25271.1	chr3	104864386	104864586	+	1	NA	NA	NA	19	NM_009797	12340	Mm.19142	NM_009797	ENSMUSG00000070372	Capza1	CAPZ|CAZ1|Cappa1	capping protein (actin filament) muscle Z-line, alpha 1	protein-coding	0.100000	0.696517	
mm_149662.1	chr19	18730574	18730774	+	1	NA	NA	NA	17438	NM_177640	225995	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	0.015000	0.482587	
mm_41115.1	chr5	87780018	87780218	+	1	NA	NA	NA	5668	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.005000	0.313433	
mm_17084.1	chr2	22960746	22960946	-	1	NA	NA	NA	65324	NM_019501	56075	Mm.249752	NM_019501	ENSMUSG00000026784	Pdss1	2610203G20Rik|2700031G06Rik|TPT|TPT 1|Tprt|mDLP1|mSPS1	prenyl (solanesyl) diphosphate synthase, subunit 1	protein-coding	0.010000	0.437811	
mm_170716.1	chr2	144368911	144369111	+	1	NA	NA	NA	-21	NM_001166640	228714	Mm.227925	NM_181417	ENSMUSG00000027425	Csrp2bp	2510008M08Rik|ATAC2|AU023459|D2Ertd473e|D2Wsu131e|E430020F17|Kat14	cysteine and glycine-rich protein 2 binding protein	protein-coding	0.150000	0.736318	
mm_134041.1	chr16	5132401	5132601	-	1	NA	NA	NA	-20	NM_008909	19041	Mm.266875	NM_008909	ENSMUSG00000039457	Ppl	AW553870	periplakin	protein-coding	0.135000	0.751244	
mm_43167.1	chr5	127245050	127245250	+	1	NA	NA	NA	3324	NM_175432	208213	Mm.444235	NM_175432	ENSMUSG00000034324	Tmem132c	2810482M11Rik|3230401P16|4632425D07Rik	transmembrane protein 132C	protein-coding	0.005000	0.437811	
mm_19952.1	chr2	117336300	117336500	-	1	NA	NA	NA	6477	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.000000	0.462687	-38(TGCTTTAAAAAA,-,0.00),-37(GCTTTAAAAAAC,+,0.00)
mm_77783.1	chr9	3024659	3024859	+	1	NA	NA	NA	13984	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.020000	0.333333	
mm_128223.1	chr15	36455433	36455633	-	1	NA	NA	NA	41258	NM_175134	68839	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0.035000	0.597015	
mm_91256.1	chr10	23180085	23180285	-	1	NA	NA	NA	169705	NM_001347372	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.025000	0.452736	-40(GATTTTAAAAAG,-,0.00),-38(TTTTAAAAAGGC,+,0.00)
mm_49645.1	chr6	30805562	30805762	+	1	NA	NA	NA	64363	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.010000	0.557214	
mm_134251.1	chr16	13672524	13672724	-	1	NA	NA	NA	766	NM_025653	67118	Mm.223689	NM_025653	ENSMUSG00000022684	Bfar	3010001A07Rik|3110001I22Rik|AI666707|AW107665|Bar|Rnf47	bifunctional apoptosis regulator	protein-coding	0.030000	0.502488	
mm_101700.1	chr11	40755082	40755282	-	1	NA	NA	NA	104	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.075000	0.671642	
mm_164319.1	chr16	3743368	3743568	+	1	NA	NA	NA	-631	NM_148924	74120	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.025000	0.482587	
mm_141448.1	chr17	30004530	30004730	-	1	NA	NA	NA	-457	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.115000	0.706468	
mm_119674.1	chr14	52622480	52622680	+	1	NA	NA	NA	-126885	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.005000	0.422886	
mm_141172.1	chr17	26570725	26570925	-	1	NA	NA	NA	9313	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.025000	0.577114	74(CCACATATAAGC,-,0.00)
mm_93781.1	chr10	120476617	120476817	-	1	NA	NA	NA	-248	NM_010441	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0.030000	0.552239	
mm_150445.1	chr19	38030146	38030346	+	1	NA	NA	NA	13331	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.020000	0.527363	
mm_47510.1	chr5	124075005	124075205	-	1	NA	NA	NA	20693	NM_019875	56325	Mm.254839	NM_019875	ENSMUSG00000029408	Abcb9	TAPL|mKIAA1520	ATP-binding cassette, sub-family B (MDR/TAP), member 9	protein-coding	0.015000	0.547264	
mm_48354.1	chr5	139345083	139345283	-	1	NA	NA	NA	-17	NM_197980	68033	Mm.261064	NM_197980	ENSMUSG00000045438	Cox19	1810074D02Rik|2810437L13Rik	cytochrome c oxidase assembly protein 19	protein-coding	0.105000	0.656716	
mm_1279.1	chr1	63446080	63446280	+	1	NA	NA	NA	289	NM_011780	23792	Mm.124892	NM_011780	ENSMUSG00000025964	Adam23	AW046396|MDC3	a disintegrin and metallopeptidase domain 23	protein-coding	0.145000	0.786070	
mm_17262.1	chr2	25983163	25983363	-	1	NA	NA	NA	19	NM_001276360	227634	Mm.36834	NM_001115076	ENSMUSG00000026933	Camsap1	9530003A05Rik|C77823|PRO2405	calmodulin regulated spectrin-associated protein 1	protein-coding	0.155000	0.771144	
mm_55241.1	chr6	52346901	52347101	-	1	NA	NA	NA	-32169	NR_038163	70593	Mm.158412	NR_038163	ENSMUSG00000086126	Evx1os	5730457N03Rik|Evx1as	even skipped homeotic gene 1, opposite strand	ncRNA	0.060000	0.532338	
mm_8786.1	chr1	161251070	161251270	-	1	NA	NA	NA	40	NR_130150	11758	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	0.095000	0.721393	
mm_92490.1	chr10	78298161	78298361	-	1	NA	NA	NA	41946	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.030000	0.587065	
mm_86734.1	chr10	19087211	19087411	+	1	NA	NA	NA	-54438	NR_038021	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.000000	0.422886	
mm_168548.1	chr1	162893215	162893415	-	1	NA	NA	NA	5397	NM_018881	55990	Mm.10929	NM_018881	ENSMUSG00000040170	Fmo2	2310008D08Rik|2310042I22Rik|AW107733	flavin containing monooxygenase 2	protein-coding	0.000000	0.482587	
mm_103203.1	chr11	70652102	70652302	-	1	NA	NA	NA	2448	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.025000	0.547264	
mm_134471.1	chr16	18586796	18586996	-	1	NA	NA	NA	73	NM_011532	21380	Mm.295194	NM_011532	ENSMUSG00000009097	Tbx1	-	T-box 1	protein-coding	0.150000	0.726368	
mm_5775.1	chr1	51477817	51478017	-	1	NA	NA	NA	482	NM_028696	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.040000	0.542289	
mm_106419.1	chr11	119228358	119228558	-	1	NA	NA	NA	41	NM_001347625	207592	Mm.205263	NM_172443	ENSMUSG00000039976	Tbc1d16	B930087K01|BC026530|Tcd1d16	TBC1 domain family, member 16	protein-coding	0.150000	0.776119	
mm_101024.1	chr11	8579108	8579308	-	1	NA	NA	NA	85327	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.015000	0.472637	
mm_21521.1	chr2	163632112	163632312	-	1	NA	NA	NA	-12638	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.005000	0.427861	
mm_127404.1	chr15	101232106	101232306	+	1	NA	NA	NA	-7020	NR_045328	380977	Mm.399924	NR_045326	ENSMUSG00000097915	A330009N23Rik	-	RIKEN cDNA A330009N23 gene	ncRNA	0.015000	0.562189	
mm_11805.1	chr2	43900069	43900269	+	1	NA	NA	NA	151345	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.010000	0.358209	
mm_76762.1	chr8	95735048	95735248	-	1	NA	NA	NA	18066	NR_106041	102465650		NR_106041	ENSMUSG00000106145	Mir7073	mmu-mir-7073	microRNA 7073	ncRNA	0.015000	0.407960	
mm_114405.1	chr13	64161786	64161986	+	1	NA	NA	NA	20	NM_019986	56541	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	0.155000	0.796020	
mm_10718.1	chr2	22804657	22804857	+	1	NA	NA	NA	30430	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.015000	0.407960	
mm_159711.1	chr5	31297659	31297859	+	1	NA	NA	NA	178	NM_144909	231103	Mm.100043	NM_144909	ENSMUSG00000059434	Gckr	GKRP	glucokinase regulatory protein	protein-coding	0.005000	0.447761	
mm_59517.1	chr7	27592636	27592836	+	1	NA	NA	NA	1184	NM_001110208	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.015000	0.492537	-89(TTCTCTTTAAGG,-,0.00)
mm_47313.1	chr5	122458447	122458647	-	1	NA	NA	NA	36103	NM_019805	56317	Mm.37341	NM_019805	ENSMUSG00000029466	Anapc7	APC7|AW545589	anaphase promoting complex subunit 7	protein-coding	0.030000	0.527363	-60(CTTTTTAGACCA,+,0.00)
mm_77199.1	chr8	113528573	113528773	-	1	NA	NA	NA	11391	NR_110476	78048	Mm.252797	NR_110476		4930571O06Rik	-	RIKEN cDNA 4930571O06 gene	ncRNA	0.000000	0.398010	
mm_60871.1	chr7	45942154	45942354	+	1	NA	NA	NA	13856	NM_001033243	211535	Mm.227539	NM_001033243	ENSMUSG00000040189	Ccdc114	-	coiled-coil domain containing 114	protein-coding	0.020000	0.562189	
mm_94592.1	chr11	11769459	11769659	+	1	NA	NA	NA	39403	NM_021891	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.035000	0.562189	
mm_55368.1	chr6	57691946	57692146	-	1	NA	NA	NA	32	NM_025574	66459	Mm.44201	NM_025574	ENSMUSG00000043162	Pyurf	2610022G08Rik|AI847956|Prey	Pigy upstream reading frame	protein-coding	0.125000	0.746269	
mm_119677.1	chr14	52667270	52667470	+	1	NA	NA	NA	-171675	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.000000	0.412935	
mm_134777.1	chr16	23977584	23977784	-	1	NA	NA	NA	10928	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.045000	0.517413	
mm_144323.1	chr18	12862047	12862247	+	1	NA	NA	NA	566	NM_001252493	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.050000	0.631841	
mm_157722.1	chrX	70344789	70344989	-	1	NA	NA	NA	20196	NM_010498	15931	Mm.233083	NM_010498	ENSMUSG00000035847	Ids	AW214631	iduronate 2-sulfatase	protein-coding	0.000000	0.358209	
mm_108702.1	chr12	86952504	86952704	+	1	NA	NA	NA	5261	NM_001289432	217732	Mm.22337	NM_173735	ENSMUSG00000034157	Cipc	2310044G17Rik|AI842544|AI853744|Kiaa1737|mKIAA1737	CLOCK interacting protein, circadian	protein-coding	0.025000	0.502488	
mm_170531.1	chr19	34950237	34950437	+	1	NA	NA	NA	27979	NM_183046	240641	Mm.278471	NM_183046	ENSMUSG00000024795	Kif20b	33cex|B130024C23|C330014J10Rik|Mphosph1|magoo	kinesin family member 20B	protein-coding	0.015000	0.447761	
mm_46042.1	chr5	91972170	91972370	-	1	NA	NA	NA	-9202	NM_001271797	68098	Mm.159453	NM_026557	ENSMUSG00000029397	Rchy1	ARNIP|CHIMP|Pirh2|Zfp363|Znf363	ring finger and CHY zinc finger domain containing 1	protein-coding	0.015000	0.467662	
mm_65895.1	chr7	30169589	30169789	-	1	NA	NA	NA	38	NM_011980	26465	Mm.446516	NM_011980	ENSMUSG00000037029	Zfp146	OZF|Znf146	zinc finger protein 146	protein-coding	0.080000	0.626866	
mm_94323.1	chr11	4250533	4250733	+	1	NA	NA	NA	-6935	NM_008501	16878	Mm.4964	NM_008501	ENSMUSG00000034394	Lif	-	leukemia inhibitory factor	protein-coding	0.030000	0.542289	-34(CTGTATTTAAGG,-,0.00)
mm_120935.1	chr14	76507055	76507255	+	1	NA	NA	NA	2645	NM_009366	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.030000	0.492537	
mm_156962.1	chrX	169989854	169990054	+	1	NA	NA	NA	-11037	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.050000	0.477612	
mm_97072.1	chr11	72992588	72992788	+	1	NA	NA	NA	-6457	NM_008771	18436	Mm.25722	NM_008771	ENSMUSG00000020787	P2rx1	AI323649|BB122383|P2x|Pdcd3|RP-2	purinergic receptor P2X, ligand-gated ion channel, 1	protein-coding	0.015000	0.422886	
mm_102981.1	chr11	69681739	69681939	-	1	NA	NA	NA	131	NM_030702	80886	Mm.284592	NM_030702	ENSMUSG00000005204	Senp3	AA408656|Smt3ip|Smt3ip1	SUMO/sentrin specific peptidase 3	protein-coding	0.105000	0.711443	
mm_139363.1	chr17	50596397	50596597	+	1	NA	NA	NA	86950	NM_013880	224860	Mm.217362	NM_013880	ENSMUSG00000038910	Plcl2	PLC-L2|PRIP-2|Plce2|mKIAA1092	phospholipase C-like 2	protein-coding	0.005000	0.373134	
mm_2107.1	chr1	87828191	87828391	+	1	NA	NA	NA	24611	NM_009118	20215	Mm.1276	NM_009118	ENSMUSG00000056055	Sag	A930001K18Rik|Arr1|Irbp|arrestin	S-antigen, retina and pineal gland (arrestin)	protein-coding	0.025000	0.552239	
mm_168946.1	chr12	73203181	73203381	-	1	NA	NA	NA	79564	NM_008612	17420	Mm.246750	NM_008612	ENSMUSG00000021103	Mnat1	E130115E11Rik|MAT1|P36	menage a trois 1	protein-coding	0.030000	0.537313	
mm_146642.1	chr18	10782810	10783010	-	1	NA	NA	NA	66	NR_029547	387151		NR_029547	ENSMUSG00000065399	Mir133a-1	Mirn133|Mirn133a-1|mir-133a-1	microRNA 133a-1	ncRNA	0.010000	0.407960	
mm_170740.1	chr2	154892673	154892873	-	1	NA	NA	NA	133	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.085000	0.616915	
mm_51789.1	chr6	88204345	88204545	+	1	NA	NA	NA	5781	NM_008090	14461	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.035000	0.502488	
mm_135538.1	chr16	49770755	49770955	-	1	NA	NA	NA	71561	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.010000	0.452736	
mm_34915.1	chr4	155718175	155718375	+	1	NA	NA	NA	13460	NM_026899	68991	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0.000000	0.368159	
mm_167698.1	chr9	88747958	88748158	+	1	NA	NA	NA	-16208	NM_007536	12047	Mm.378888	NM_007536	ENSMUSG00000099974	Bcl2a1d	A1-d	B cell leukemia/lymphoma 2 related protein A1d	protein-coding	0.015000	0.437811	
mm_139461.1	chr17	55952757	55952957	+	1	NA	NA	NA	234	NM_015766	50498	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	0.010000	0.606965	
mm_17048.1	chr2	20968482	20968682	-	1	NA	NA	NA	-292	NR_033225	433408	Mm.386941	NR_033225		Gm13375	OTTMUSG00000011664	predicted gene 13375	ncRNA	0.170000	0.781095	
mm_40318.1	chr5	43875242	43875442	+	1	NA	NA	NA	6533	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.005000	0.373134	
mm_83878.1	chr9	55283473	55283673	-	1	NA	NA	NA	52	NM_032002	83961	Mm.443874	NM_032002	ENSMUSG00000032311	Nrg4	AI552600	neuregulin 4	protein-coding	0.025000	0.412935	
mm_119544.1	chr14	48132767	48132967	+	1	NA	NA	NA	11998	NM_033602	93834	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	0.010000	0.278607	22(GGCTTTTAAAAC,-,0.00),23(GCTTTTAAAACA,+,0.00),24(CTTTTAAAACAG,+,0.00)
mm_11326.1	chr2	30429945	30430145	+	1	NA	NA	NA	13995	NM_138748	110854	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.005000	0.462687	
mm_160933.1	chr11	91577296	91577496	-	1	NA	NA	NA	159	NM_028547	73470	Mm.67677	NM_028547	ENSMUSG00000046755	Kif2b	1700063D03Rik	kinesin family member 2B	protein-coding	0.020000	0.542289	
mm_107452.1	chr12	37013488	37013688	+	1	NA	NA	NA	-94958	NM_008584	17286	Mm.341398	NM_008584	ENSMUSG00000036144	Meox2	AI528662|Gax|Mox-2|Mox2	mesenchyme homeobox 2	protein-coding	0.015000	0.492537	
mm_83726.1	chr9	50809109	50809309	-	1	NA	NA	NA	33984	NR_045601	102580	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	0.030000	0.517413	-34(TGCTATATAAGT,-,0.00)
mm_74751.1	chr8	19064773	19064973	-	1	NA	NA	NA	-63	NM_183038	360214	Mm.271559	NM_183038	ENSMUSG00000061847	Defb39	BD-39	defensin beta 39	protein-coding	0.005000	0.452736	
mm_125250.1	chr15	35041106	35041306	+	1	NA	NA	NA	114600	NM_019635	56274	Mm.262330	NM_019635	ENSMUSG00000022329	Stk3	0610042I06Rik|MST|Mst2|Mst3|Ste20|mess1	serine/threonine kinase 3	protein-coding	0.005000	0.388060	
mm_150770.1	chr19	44293986	44294186	+	1	NA	NA	NA	410	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.055000	0.572139	
mm_43359.1	chr5	135217404	135217604	+	1	NA	NA	NA	30181	NM_011714	22385	Mm.40331	NM_011714	ENSMUSG00000002748	Baz1b	C87820|WSTF|Wbscr9	bromodomain adjacent to zinc finger domain, 1B	protein-coding	0.010000	0.542289	
mm_35783.1	chr4	46451376	46451576	-	1	NA	NA	NA	550	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.140000	0.761194	
mm_130887.1	chr15	102279267	102279467	-	1	NA	NA	NA	-89	NM_134100	106073	Mm.287740	NM_134100	ENSMUSG00000045665	Mfsd5	AA409375|AW556797|D15Mgi27	major facilitator superfamily domain containing 5	protein-coding	0.090000	0.661692	
mm_129355.1	chr15	77928868	77929068	-	1	NA	NA	NA	26	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.070000	0.636816	
mm_100193.1	chr11	116752214	116752414	+	1	NA	NA	NA	147	NR_003364	193217	Mm.100084	NR_003364		BC018473	-	cDNA sequence BC018473	ncRNA	0.005000	0.452736	
mm_30492.1	chr3	156561661	156561861	-	1	NA	NA	NA	-15	NR_040400	329782	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA	0.115000	0.701493	
mm_48040.1	chr5	136370887	136371087	-	1	NA	NA	NA	4816	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	0.010000	0.442786	
mm_68324.1	chr7	106503459	106503659	-	1	NA	NA	NA	-62486	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.005000	0.407960	
mm_32001.1	chr4	94603430	94603630	+	1	NA	NA	NA	-283	NM_172695	18786	Mm.490101	NM_172695	ENSMUSG00000028577	Plaa	2410007N06|AI536418|AU018445|AW208417|D4Ertd618e|PLA2P|PLAP|Ufd3	phospholipase A2, activating protein	protein-coding	0.060000	0.472637	
mm_66379.1	chr7	43797420	43797620	-	1	NA	NA	NA	-57	NM_001324398	259277	Mm.458023	NM_008940	ENSMUSG00000064023	Klk8	BSP1|NP|Nrpn|Prss19	kallikrein related-peptidase 8	protein-coding	0.090000	0.651741	-38(CCTTTTAACGAG,+,0.00)
mm_44539.1	chr5	24540325	24540525	-	1	NA	NA	NA	32	NM_080444	117590	Mm.207071	NM_080444	ENSMUSG00000038204	Asb10	Asb-10|BB137407	ankyrin repeat and SOCS box-containing 10	protein-coding	0.015000	0.552239	
mm_7667.1	chr1	128588340	128588540	-	1	NA	NA	NA	3859	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.010000	0.402985	
mm_17460.1	chr2	28557654	28557854	-	1	NA	NA	NA	5649	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.010000	0.557214	
mm_92018.1	chr10	62362189	62362389	-	1	NA	NA	NA	17619	NM_010438	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.015000	0.557214	
mm_8385.1	chr1	151344236	151344436	-	1	NA	NA	NA	-162	NM_001039512	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.095000	0.681592	
mm_80051.1	chr9	69300436	69300636	+	1	NA	NA	NA	10695	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.020000	0.527363	
mm_141720.1	chr17	34031592	34031792	-	1	NA	NA	NA	-2	NM_008202	14977	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	0.130000	0.716418	
mm_121664.1	chr14	12345685	12345885	-	1	NA	NA	NA	80	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	0.100000	0.611940	
mm_154589.1	chrX	7579576	7579776	+	1	NA	NA	NA	0	NM_001199347	20371	Mm.182291	NM_054039	ENSMUSG00000039521	Foxp3	JM2|scurfin|sf	forkhead box P3	protein-coding	0.035000	0.492537	-35(CGGTATAAAAGC,-,0.00)
mm_59543.1	chr7	27860503	27860703	+	1	NA	NA	NA	18	NM_001024726	545938	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	0.035000	0.606965	
mm_125744.1	chr15	73723041	73723241	+	1	NA	NA	NA	-4	NM_001166390	19245	Mm.390807	NM_008975	ENSMUSG00000059895	Ptp4a3	AV088979|Prl-3|pPtp4a3	protein tyrosine phosphatase 4a3	protein-coding	0.015000	0.562189	
mm_113636.1	chr13	42051944	42052144	+	1	NA	NA	NA	23	NM_007772	110521	Mm.4808	NM_007772	ENSMUSG00000021366	Hivep1	Cryabp1	human immunodeficiency virus type I enhancer binding protein 1	protein-coding	0.135000	0.791045	
mm_27418.1	chr3	51516156	51516356	-	1	NA	NA	NA	32290	NM_016858	19338	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.030000	0.577114	
mm_28437.1	chr3	90489050	90489250	-	1	NA	NA	NA	1863	NM_133854	20615	Mm.331182	NM_133854	ENSMUSG00000001018	Snapin	25kDa|AA407989|AV026596|Bloc1s7|Snap25bp|Snapap	SNAP-associated protein	protein-coding	0.015000	0.432836	
mm_111780.1	chr12	104340789	104340989	-	1	NA	NA	NA	2403	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.000000	0.482587	
mm_104408.1	chr11	94601709	94601909	-	1	NA	NA	NA	-23	NM_153807	264895	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0.110000	0.676617	
mm_142793.1	chr17	50182461	50182661	-	1	NA	NA	NA	7936	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.020000	0.542289	
mm_103972.1	chr11	84524763	84524963	-	1	NA	NA	NA	671	NM_008498	16869	Mm.4965	NM_008498	ENSMUSG00000018698	Lhx1	Lim1	LIM homeobox protein 1	protein-coding	0.070000	0.616915	
mm_57414.1	chr6	124888105	124888305	-	1	NA	NA	NA	4	NM_013488	12504	Mm.2209	NM_013488	ENSMUSG00000023274	Cd4	L3T4|Ly-4	CD4 antigen	protein-coding	0.030000	0.532338	72(CCTCATATACAC,+,0.00)
mm_130222.1	chr15	96204587	96204787	-	1	NA	NA	NA	-6713	NR_040423	70040	Mm.437832	NR_040423		2610037D02Rik	AU024679	RIKEN cDNA 2610037D02 gene	ncRNA	0.015000	0.482587	
mm_124140.1	chr14	87076063	87076263	-	1	NA	NA	NA	64951	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|mDia2|mKIAA4117|p134MDia2	diaphanous related formin 3	protein-coding	0.000000	0.378109	
mm_162551.1	chr1	171229588	171229788	-	1	NA	NA	NA	4634	NM_013474	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.010000	0.442786	
mm_156281.1	chrX	136837060	136837260	+	1	NA	NA	NA	14414	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.010000	0.422886	
mm_88429.1	chr10	77448988	77449188	+	1	NA	NA	NA	30712	NR_027377	100045653	Mm.363175	NR_027377		Gm17769	-	predicted gene, 17769	ncRNA	0.010000	0.527363	-36(CCGTATAAGAGC,-,0.00)
mm_142475.1	chr17	45686059	45686259	-	1	NA	NA	NA	59	NM_198167	224807	Mm.157904	NM_198167	ENSMUSG00000036026	Tmem63b	BC026370	transmembrane protein 63b	protein-coding	0.095000	0.741294	
mm_121944.1	chr14	24081904	24082104	-	1	NA	NA	NA	-6873	NR_106069	102465697		NR_106069	ENSMUSG00000105723	Mir7210	mir-7210|mmu-mir-7210	microRNA 7210	ncRNA	0.010000	0.512438	
mm_115509.1	chr13	4391143	4391343	-	1	NA	NA	NA	-43100	NM_030611	83702	Mm.196666	NM_030611	ENSMUSG00000021210	Akr1c6	3alpha-HSD|Akr1c1|Hsd17b5	aldo-keto reductase family 1, member C6	protein-coding	0.005000	0.402985	
mm_1348.1	chr1	66321612	66321812	+	1	NA	NA	NA	-12	NM_001310634	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.020000	0.487562	
mm_47109.1	chr5	118513938	118514138	-	1	NA	NA	NA	-46681	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.045000	0.527363	
mm_94811.1	chr11	23032743	23032943	+	1	NA	NA	NA	19456	NM_028672	73873	Mm.252406	NM_028672	ENSMUSG00000049811	Fam161a	4930430E16Rik	family with sequence similarity 161, member A	protein-coding	0.005000	0.398010	
mm_167727.1	chr9	102819684	102819884	+	1	NA	NA	NA	-15136	NM_013649	20187	Mm.335391	NM_013649	ENSMUSG00000032547	Ryk	AW536699|ERK-3|Vik	receptor-like tyrosine kinase	protein-coding	0.010000	0.482587	
mm_127428.1	chr15	101269302	101269502	+	1	NA	NA	NA	2556	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.010000	0.562189	
mm_60163.1	chr7	40674639	40674839	+	1	NA	NA	NA	2	NR_045504	71029	Mm.399496	NR_045504	ENSMUSG00000102004	4933402C06Rik	-	RIKEN cDNA 4933402C06 gene	ncRNA	0.005000	0.442786	
mm_85413.1	chr9	103449013	103449213	-	1	NA	NA	NA	25535	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.005000	0.388060	
mm_101811.1	chr11	46386515	46386715	-	1	NA	NA	NA	2900	NM_001281968	16428	Mm.339927	NM_010583	ENSMUSG00000020395	Itk	Emt|Tcsk|Tsk	IL2 inducible T cell kinase	protein-coding	0.020000	0.388060	40(TTCTCTAAATGG,-,0.00)
mm_124662.1	chr15	6299724	6299924	+	1	NA	NA	NA	35	NM_001008702	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.010000	0.388060	
mm_81184.1	chr9	107505788	107505988	+	1	NA	NA	NA	-28057	NM_019704	56395	Mm.260153	NM_019704	ENSMUSG00000010045	Tmem115	C78915|Pl6|Pp6	transmembrane protein 115	protein-coding	0.020000	0.542289	
mm_68616.1	chr7	116458859	116459059	-	1	NA	NA	NA	-15501	NM_011083	18704	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol 3-kinase, C2 domain containing, alpha polypeptide	protein-coding	0.005000	0.457711	-34(AGCTATAAAAGG,-,0.00)
mm_139821.1	chr17	67722187	67722387	+	1	NA	NA	NA	25022	NM_008480	16772	Mm.303386	NM_008480	ENSMUSG00000032796	Lama1	AA408497|Lama	laminin, alpha 1	protein-coding	0.010000	0.422886	
mm_42026.1	chr5	108279340	108279540	+	1	NA	NA	NA	10543	NM_026106	13486	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0.010000	0.378109	
mm_22590.1	chr3	13509914	13510114	+	1	NA	NA	NA	38359	NM_001163328	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.000000	0.323383	
mm_67944.1	chr7	100371839	100372039	-	1	NA	NA	NA	-43	NM_028292	72590	Mm.177502	NM_028292	ENSMUSG00000030718	Ppme1	1110069N17Rik|2700017M01Rik|PME-1|Pme1	protein phosphatase methylesterase 1	protein-coding	0.100000	0.646766	
mm_148494.1	chr19	4156006	4156206	+	1	NA	NA	NA	1460	NM_016933	19265	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	0.040000	0.681592	
mm_15191.1	chr2	154204602	154204802	+	1	NA	NA	NA	4322	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.025000	0.577114	
mm_136575.1	chr17	3482084	3482284	+	1	NA	NA	NA	-131	NM_001286758	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.010000	0.462687	
mm_131907.1	chr16	23269494	23269694	+	1	NA	NA	NA	-20876	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.010000	0.507463	
mm_136856.1	chr17	12799053	12799253	+	1	NA	NA	NA	-29447	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.005000	0.373134	-75(GCTTATATATTG,+,0.00)
mm_159550.1	chr4	101727775	101727975	+	1	NA	NA	NA	10468	NM_010704	16847	Mm.259282	NM_010704	ENSMUSG00000057722	Lepr	LEPROT|Leprb|Modb1|OB-RGRP|Obr|db|diabetes|obese-like|obl	leptin receptor	protein-coding	0.010000	0.288557	
mm_35096.1	chr4	8822531	8822731	-	1	NA	NA	NA	132225	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.005000	0.388060	
mm_124607.1	chr15	3279202	3279402	+	1	NA	NA	NA	8325	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.010000	0.562189	
mm_6944.1	chr1	85731056	85731256	-	1	NA	NA	NA	5450	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.010000	0.427861	38(GCCTTTATATCC,+,0.00)
mm_166951.1	chr7	44210596	44210796	+	1	NA	NA	NA	3263	NM_010915	18048	Mm.440886	NM_010915	ENSMUSG00000066513	Klk1b4	Ngfa|alpha-NGF|mGk-4	kallikrein 1-related pepidase b4	protein-coding	0.010000	0.537313	
mm_161238.1	chr13	95984740	95984940	-	1	NA	NA	NA	-92918	NM_027711	544963	Mm.38878	NM_027711	ENSMUSG00000021676	Iqgap2	4933417J23Rik|A630053O10|AI788777	IQ motif containing GTPase activating protein 2	protein-coding	0.000000	0.502488	
mm_58949.1	chr7	18717984	18718184	+	1	NA	NA	NA	-6	NM_001004152	243862	Mm.389833	NM_001004152	ENSMUSG00000044903	Psg22	AA408604|cea9	pregnancy-specific glycoprotein 22	protein-coding	0.010000	0.472637	
mm_84255.1	chr9	62510496	62510696	-	1	NA	NA	NA	26448	NM_175484	235431	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.015000	0.467662	
mm_41615.1	chr5	96795988	96796188	+	1	NA	NA	NA	2703	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.005000	0.412935	
mm_113680.1	chr13	42799712	42799912	+	1	NA	NA	NA	-66435	NM_001302636	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.005000	0.442786	
mm_21364.1	chr2	157133873	157134073	-	1	NA	NA	NA	1249	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.020000	0.462687	-10(AGCTTTAAAAGG,-,0.00),-9(GCTTTAAAAGGG,+,0.00),-8(CTTTAAAAGGGG,+,0.00)
mm_118773.1	chr14	22772694	22772894	+	1	NA	NA	NA	-229996	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.000000	0.348259	
mm_114116.1	chr13	55005900	55006100	+	1	NA	NA	NA	14819	NM_001206390	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.040000	0.472637	63(GGCTATAAGGGG,-,0.00)
mm_90033.1	chr10	115430975	115431175	+	1	NA	NA	NA	46116	NM_001033261	216345	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0.000000	0.328358	28(CTATTTTAAAGG,-,0.00)
mm_97021.1	chr11	71750889	71751089	+	1	NA	NA	NA	286	NM_177618	216881	Mm.48648	NM_177618	ENSMUSG00000020811	Wscd1	mKIAA0523	WSC domain containing 1	protein-coding	0.145000	0.771144	
mm_49904.1	chr6	38951776	38951976	+	1	NA	NA	NA	32890	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.015000	0.383085	
mm_113428.1	chr13	34162947	34163147	+	1	NA	NA	NA	83	NM_001110515	69666	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.110000	0.681592	
mm_11209.1	chr2	29457268	29457468	+	1	NA	NA	NA	17926	NR_105753	102465170		NR_105753	ENSMUSG00000098539	Mir133c	Gm27865|mmu-mir-133c	microRNA 133c	ncRNA	0.025000	0.462687	54(CCATATATACAG,+,0.00)
mm_12415.1	chr2	70561196	70561396	+	1	NA	NA	NA	-833	NM_001312900	14415	Mm.272120	NM_008077	ENSMUSG00000070880	Gad1	EP10|Gad-1	glutamate decarboxylase 1	protein-coding	0.050000	0.547264	-68(GCCTTTTTATGG,-,0.00),-66(CTTTTTATGGTG,+,0.00)
mm_10201.1	chr2	4935908	4936108	+	1	NA	NA	NA	17012	NM_010726	16922	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.020000	0.477612	
mm_123775.1	chr14	70316508	70316708	-	1	NA	NA	NA	-27111	NM_001304992	19057	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	0.045000	0.582090	
mm_162629.1	chr1	185969854	185970054	+	1	NA	NA	NA	147356	NM_146106	226791	Mm.257116	NM_146106	ENSMUSG00000039246	Lyplal1	BC027340|Q96AVO	lysophospholipase-like 1	protein-coding	0.000000	0.373134	
mm_49425.1	chr6	29271203	29271403	+	1	NA	NA	NA	-1185	NM_001190461	69573	Mm.45161	NM_023516	ENSMUSG00000043421	Hilpda	2310016C08Rik|AW049004|Hig2	hypoxia inducible lipid droplet associated	protein-coding	0.020000	0.537313	
mm_57651.1	chr6	128438527	128438727	-	1	NA	NA	NA	4	NM_010219	14228	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	59kDa|AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	0.175000	0.786070	
mm_44370.1	chr5	17814066	17814266	-	1	NA	NA	NA	21730	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.323383	
mm_98757.1	chr11	96545579	96545779	+	1	NA	NA	NA	81088	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.005000	0.462687	
mm_101620.1	chr11	35844311	35844511	-	1	NA	NA	NA	-9883	NM_025936	104458	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.020000	0.527363	
mm_169986.1	chr17	15041433	15041633	-	1	NA	NA	NA	26	NM_001123368	100041586	Mm.440445	NM_001123368	ENSMUSG00000079710	Gm3417	-	predicted gene 3417	protein-coding	0.135000	0.721393	
mm_115492.1	chr13	3611100	3611300	-	1	NA	NA	NA	-92	NM_134063	105203	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	0.100000	0.641791	
mm_98094.1	chr11	86603962	86604162	+	1	NA	NA	NA	-19904	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.005000	0.383085	
mm_51175.1	chr6	70726599	70726799	+	1	NA	NA	NA	65476	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.020000	0.512438	
mm_110807.1	chr12	72212468	72212668	-	1	NA	NA	NA	23178	NR_104446	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.025000	0.507463	
mm_59334.1	chr7	25433583	25433783	+	1	NA	NA	NA	-20797	NM_153576	232983	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0.010000	0.562189	
mm_109254.1	chr12	109459613	109459813	+	1	NA	NA	NA	6258	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.075000	0.631841	
mm_50115.1	chr6	41534227	41534427	+	1	NA	NA	NA	12551	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.020000	0.522388	
mm_157183.1	chrX	10216360	10216560	-	1	NA	NA	NA	-7	NM_001177952	19893	Mm.247556	NM_011285	ENSMUSG00000031174	Rpgr	Rp3h	retinitis pigmentosa GTPase regulator	protein-coding	0.100000	0.681592	
mm_107341.1	chr12	32379651	32379851	+	1	NA	NA	NA	962	NM_001162903	72123	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.130000	0.696517	
mm_29969.1	chr3	133518679	133518879	-	1	NA	NA	NA	25611	NM_001346736	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.005000	0.447761	-35(CCTTTAAAACCA,+,0.00)
mm_43824.1	chr5	142963584	142963784	+	1	NA	NA	NA	3329	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.025000	0.577114	
mm_114587.1	chr13	75749955	75750155	+	1	NA	NA	NA	42571	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.025000	0.398010	
mm_82389.1	chr9	14675892	14676092	-	1	NA	NA	NA	-60992	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.010000	0.547264	
mm_26359.1	chr3	142549358	142549558	+	1	NA	NA	NA	-10594	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.000000	0.258706	
mm_30753.1	chr4	14930615	14930815	+	1	NA	NA	NA	74	NM_001243100	100038514	Mm.331495	NM_001243100		Gm11837	OTTMUSG00000004551	predicted gene 11837	protein-coding	0.175000	0.815920	
mm_154515.1	chrM	12568	12768	-	1	NA	NA	NA	NA	NA									0.020000	0.412935	-99(GCATATAAAGAG,+,0.00)
mm_169002.1	chr13	102421497	102421697	+	1	NA	NA	NA	-271961	NM_008533	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly78|RP105	CD180 antigen	protein-coding	0.065000	0.656716	
mm_105233.1	chr11	102317533	102317733	-	1	NA	NA	NA	-346	NM_001044383	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.170000	0.815920	
mm_149817.1	chr19	24030720	24030920	+	1	NA	NA	NA	199	NM_001114174	381217	Mm.426078	NM_001114174	ENSMUSG00000071604	Fam189a2	AI414343|AI666772|Gm967	family with sequence similarity 189, member A2	protein-coding	0.155000	0.850746	
mm_104676.1	chr11	97687118	97687318	-	1	NA	NA	NA	1266	NM_001085500	217149	Mm.29659	NM_001085500	ENSMUSG00000078695	Cisd3	Mel-13|Mel13	CDGSH iron sulfur domain 3	protein-coding	0.005000	0.532338	
mm_30443.1	chr3	153705597	153705797	-	1	NA	NA	NA	19436	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.010000	0.457711	
mm_42993.1	chr5	123344408	123344608	+	1	NA	NA	NA	60	NM_029850	77045	Mm.151960	NM_029850	ENSMUSG00000029438	Bcl7a	4432415N06Rik|AI448316	B cell CLL/lymphoma 7A	protein-coding	0.115000	0.711443	
mm_151328.1	chr19	55893296	55893496	+	1	NA	NA	NA	-1925	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.020000	0.402985	
mm_104211.1	chr11	88340600	88340800	-	1	NA	NA	NA	-12073	NR_039545	100628571		NR_039545	ENSMUSG00000092985	Mir378b	mir-378b|mmu-mir-378b	microRNA 378b	ncRNA	0.020000	0.383085	
mm_100126.1	chr11	115912192	115912392	+	1	NA	NA	NA	275	NM_001162998	68528	Mm.441893	NM_001162998	ENSMUSG00000075420	Smim6	1110017F19Rik	small integral membrane protein 6	protein-coding	0.000000	0.557214	
mm_25068.1	chr3	99296408	99296608	+	1	NA	NA	NA	42748	NM_009323	21384	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0.010000	0.507463	
mm_77847.1	chr9	5302987	5303187	+	1	NA	NA	NA	4570	NM_009807	12362	Mm.1051	NM_009807	ENSMUSG00000025888	Casp1	ICE|Il1bc	caspase 1	protein-coding	0.020000	0.417910	
mm_90373.1	chr10	127181750	127181950	+	1	NA	NA	NA	-1205	NM_177615	216441	Mm.248373	NM_177615	ENSMUSG00000040441	Slc26a10	C78409|D630010I07	solute carrier family 26, member 10	protein-coding	0.025000	0.547264	
mm_118438.1	chr14	8080250	8080450	+	1	NA	NA	NA	37	NM_025938	67053	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	0.100000	0.606965	
mm_11360.1	chr2	30929049	30929249	+	1	NA	NA	NA	-23852	NM_133673	30934	Mm.249164	NM_133673	ENSMUSG00000026848	Tor1b	2610016F05Rik|DQ1|torsinB	torsin family 1, member B	protein-coding	0.005000	0.542289	
mm_36571.1	chr4	87881650	87881850	-	1	NA	NA	NA	-75427	NM_029931	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.005000	0.457711	
mm_151146.1	chr19	53140340	53140540	+	1	NA	NA	NA	-3	NM_001164099	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.020000	0.497512	46(CCTTTAAGAGAG,+,0.00)
mm_159068.1	chr2	24950296	24950496	+	1	NA	NA	NA	238	NM_147179	67187	Mm.296106	NM_026021	ENSMUSG00000026974	Zmynd19	2700064H14Rik|AA536891|AU014915|mizip	zinc finger, MYND domain containing 19	protein-coding	0.100000	0.656716	
mm_170711.1	chr2	144149076	144149276	+	1	NA	NA	NA	40114	NR_136884	433481	Mm.330630	NR_136884	ENSMUSG00000074758	Gm5535	EG433481	predicted gene 5535	ncRNA	0.060000	0.497512	
mm_141950.1	chr17	35081139	35081339	-	1	NA	NA	NA	4297	NM_027366	70274	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	0.020000	0.507463	
mm_144871.1	chr18	36744605	36744805	+	1	NA	NA	NA	49	NM_011879	24010	Mm.30234	NM_011879	ENSMUSG00000024474	Ik	MuRED	IK cytokine	protein-coding	0.080000	0.532338	
mm_154975.1	chrX	37191170	37191370	+	1	NA	NA	NA	-32	NM_019443	54405	Mm.34869	NM_019443	ENSMUSG00000016427	Ndufa1	1810049F12Rik|MWFE	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1	protein-coding	0.115000	0.651741	
mm_99535.1	chr11	103192978	103193178	+	1	NA	NA	NA	15470	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.085000	0.616915	
mm_164457.1	chr16	55551118	55551318	+	1	NA	NA	NA	56487	NR_039578	100628589		NR_039578	ENSMUSG00000093292	Mir5118	mmu-mir-5118|mu-mir-5118	microRNA 5118	ncRNA	0.005000	0.388060	
mm_94876.1	chr11	24113646	24113846	+	1	NA	NA	NA	33051	NM_001159290	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.000000	0.417910	
mm_136423.1	chr16	93982470	93982670	-	1	NA	NA	NA	26267	NM_019500	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.030000	0.537313	
mm_71594.1	chr8	54955005	54955205	+	1	NA	NA	NA	377	NM_001253756	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.015000	0.472637	
mm_126221.1	chr15	78914342	78914542	+	1	NA	NA	NA	523	NM_020271	57028	Mm.263169	NM_020271	ENSMUSG00000022436	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	0.155000	0.741294	
mm_152316.1	chr19	9914059	9914259	-	1	NA	NA	NA	-14626	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.010000	0.497512	
mm_146432.1	chr18	84871832	84872032	+	1	NA	NA	NA	20518	NM_025797	109672	Mm.31018	NM_025797	ENSMUSG00000024646	Cyb5a	0610009N12Rik|Cyb5	cytochrome b5 type A (microsomal)	protein-coding	0.015000	0.388060	
mm_13682.1	chr2	116972288	116972488	+	1	NA	NA	NA	72236	NR_040335	320975	Mm.132509	NR_040335	ENSMUSG00000085316	D330050G23Rik	-	RIKEN cDNA D330050G23 gene	ncRNA	0.030000	0.482587	
mm_73137.1	chr8	94977183	94977383	+	1	NA	NA	NA	174	NM_001198894	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.020000	0.562189	
mm_101013.1	chr11	8531650	8531850	-	1	NA	NA	NA	132785	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.020000	0.517413	
mm_73082.1	chr8	94480491	94480691	+	1	NA	NA	NA	7828	NM_001033207	434341	Mm.334720	NM_001033207	ENSMUSG00000074151	Nlrc5	AI451557|AK220210|NOD27	NLR family, CARD domain containing 5	protein-coding	0.020000	0.482587	
mm_59473.1	chr7	27447960	27448160	+	1	NA	NA	NA	82	NM_144923	233016	Mm.24021	NM_144923	ENSMUSG00000040466	Blvrb	-	biliverdin reductase B (flavin reductase (NADPH))	protein-coding	0.085000	0.641791	
mm_115997.1	chr13	24414841	24415041	-	1	NA	NA	NA	-181	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.010000	0.512438	
mm_110663.1	chr12	59219609	59219809	-	1	NA	NA	NA	-226	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.140000	0.681592	
mm_10647.1	chr2	20655055	20655255	+	1	NA	NA	NA	135642	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.000000	0.457711	
mm_31785.1	chr4	63634335	63634535	+	1	NA	NA	NA	-12006	NM_029324	75524	Mm.38543	NM_029324	ENSMUSG00000058935	1700018C11Rik	bM230C2.3	RIKEN cDNA 1700018C11 gene	protein-coding	0.000000	0.378109	
mm_76663.1	chr8	93337106	93337306	-	1	NA	NA	NA	3	NM_021456	12623	Mm.22720	NM_021456	ENSMUSG00000057074	Ces1g	Ces-1|Ces1|Ses-1	carboxylesterase 1G	protein-coding	0.000000	0.477612	
mm_51393.1	chr6	78370946	78371146	+	1	NA	NA	NA	161	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.005000	0.417910	
mm_77027.1	chr8	108884824	108885024	-	1	NA	NA	NA	-51936	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.010000	0.442786	
mm_50625.1	chr6	50189957	50190157	+	1	NA	NA	NA	71712	NM_018769	54722	Mm.248361	NM_018769	ENSMUSG00000029821	Dfna5	2310037D07Rik|4932441K13Rik|Dfna5h|EG14210|Fin15	deafness, autosomal dominant 5 (human)	protein-coding	0.000000	0.328358	
mm_56149.1	chr6	87838632	87838832	-	1	NA	NA	NA	27	NM_133934	57905	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	0.095000	0.611940	
mm_34240.1	chr4	141193573	141193773	+	1	NA	NA	NA	-20283	NM_001081174	76166	Mm.271064	NM_001081174	ENSMUSG00000073733	Rsg1	6330545A04Rik|Gm723	REM2 and RAB-like small GTPase 1	protein-coding	0.010000	0.537313	
mm_22403.1	chr2	181241899	181242099	-	1	NA	NA	NA	28	NM_183162	229003	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.040000	0.616915	
mm_153950.1	chr19	47669199	47669399	-	1	NA	NA	NA	22743	NM_007732	12821	Mm.1225	NM_007732	ENSMUSG00000025064	Col17a1	BP180|Bpag|Bpag2	collagen, type XVII, alpha 1	protein-coding	0.035000	0.686567	
mm_35906.1	chr4	49681897	49682097	-	1	NA	NA	NA	-14	NM_001004025	19059	Mm.46125	NM_001004025	ENSMUSG00000028310	Ppp3r2	CaNB2|CnB2	protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type II)	protein-coding	0.045000	0.616915	
mm_9967.1	chr1	191181472	191181672	-	1	NA	NA	NA	1761	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.005000	0.512438	
mm_24275.1	chr3	89204262	89204462	+	1	NA	NA	NA	1437	NR_122037	14466	Mm.5031	NM_008094	ENSMUSG00000028048	Gba	GBA1|GC|GCase|GLUC|betaGC	glucosidase, beta, acid	protein-coding	0.020000	0.502488	
mm_138424.1	chr17	35069606	35069806	+	1	NA	NA	NA	2381	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.005000	0.502488	-6(GCCTTTCTAGCC,+,0.00)
mm_10642.1	chr2	20547867	20548067	+	1	NA	NA	NA	28454	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.020000	0.432836	
mm_135270.1	chr16	38395952	38396152	-	1	NA	NA	NA	33862	NM_022318	64082	Mm.390856	NM_022318	ENSMUSG00000022803	Popdc2	AV006127|Pop2	popeye domain containing 2	protein-coding	0.000000	0.303483	
mm_145003.1	chr18	38418833	38419033	+	1	NA	NA	NA	-42	NM_022996	65113	Mm.102496	NM_022996	ENSMUSG00000024425	Ndfip1	0610010M22Rik|N4wbp5	Nedd4 family interacting protein 1	protein-coding	0.175000	0.786070	
mm_123426.1	chr14	64439709	64439909	-	1	NA	NA	NA	1217	NM_001253715	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.000000	0.398010	
mm_33204.1	chr4	126321052	126321252	+	1	NA	NA	NA	551	NM_133883	100206	Mm.11285	NM_133883	ENSMUSG00000042558	Adprhl2	AI836109|Arh3	ADP-ribosylhydrolase like 2	protein-coding	0.060000	0.572139	
mm_69705.1	chr7	140082423	140082623	-	1	NA	NA	NA	25	NM_001190385	68566	Mm.44241	NM_026769	ENSMUSG00000025468	Caly	0710001P07Rik|1110004A22Rik|Calcyon|Drd1ip	calcyon neuron-specific vesicular protein	protein-coding	0.050000	0.621891	
mm_49014.1	chr6	4758465	4758665	+	1	NA	NA	NA	11259	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.015000	0.313433	
mm_95566.1	chr11	52389043	52389243	+	1	NA	NA	NA	-7285	NM_153117	213673	Mm.291979	NM_153117	ENSMUSG00000036275	9530068E07Rik	C85061|Kct2	RIKEN cDNA 9530068E07 gene	protein-coding	0.025000	0.477612	
mm_75460.1	chr8	47750037	47750237	-	1	NA	NA	NA	-36206	NM_172407	70925	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.045000	0.537313	
mm_54347.1	chr6	30806515	30806715	-	1	NA	NA	NA	65316	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.263682	
mm_15077.1	chr2	153136467	153136667	+	1	NA	NA	NA	-24734	NM_133847	99237	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.005000	0.517413	45(CTGTCTTAAAGG,-,0.00)
mm_138142.1	chr17	34200767	34200967	+	1	NA	NA	NA	2672	NM_010724	16913	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	0.030000	0.567164	
mm_68868.1	chr7	126429190	126429390	-	1	NA	NA	NA	523	NM_030566	70314	Mm.35467	NM_030566	ENSMUSG00000030727	Rabep2	2610011A08Rik|AI462746|Fra	rabaptin, RAB GTPase binding effector protein 2	protein-coding	0.100000	0.756219	
mm_14232.1	chr2	127587313	127587513	+	1	NA	NA	NA	-13	NM_029963	77721	Mm.274601	NM_029963	ENSMUSG00000027374	Mrps5	1620401I16Rik|AI850294	mitochondrial ribosomal protein S5	protein-coding	0.100000	0.666667	
mm_79099.1	chr9	46243010	46243210	+	1	NA	NA	NA	2266	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.015000	0.572139	
mm_110810.1	chr12	72223312	72223512	-	1	NA	NA	NA	12334	NR_104446	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.035000	0.572139	
mm_151549.1	chr19	59458338	59458538	+	1	NA	NA	NA	197	NR_002863	329078	Mm.80382	NR_002863	ENSMUSG00000087095	Emx2os	-	Emx2 opposite strand/antisense transcript (non-protein coding)	ncRNA	0.080000	0.691542	
mm_43969.1	chr5	145809685	145809885	+	1	NA	NA	NA	-3911	NM_177380	337924	Mm.425301	NM_177380	ENSMUSG00000054417	Cyp3a44	-	cytochrome P450, family 3, subfamily a, polypeptide 44	protein-coding	0.010000	0.447761	
mm_105714.1	chr11	108343829	108344029	-	1	NA	NA	NA	-41	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.155000	0.746269	
mm_166757.1	chr6	127543053	127543253	+	1	NA	NA	NA	-34822	NM_001033464	381812	Mm.296093	NM_001033464	ENSMUSG00000061414	Cracr2a	Efcab4b|Gm1073|Gm462	calcium release activated channel regulator 2A	protein-coding	0.030000	0.487562	
mm_146634.1	chr18	10594841	10595041	-	1	NA	NA	NA	15411	NM_001081222	77805	Mm.210996	NM_144542	ENSMUSG00000024293	Esco1	A930014I12Rik	establishment of sister chromatid cohesion N-acetyltransferase 1	protein-coding	0.015000	0.358209	
mm_72665.1	chr8	84893282	84893482	+	1	NA	NA	NA	539	NM_001044744	270076	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	0.015000	0.512438	
mm_127417.1	chr15	101260575	101260775	+	1	NA	NA	NA	-6171	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.035000	0.601990	-34(TGCTATATAAAC,-,0.00)
mm_5056.1	chr1	194976957	194977157	+	1	NA	NA	NA	-98	NR_033564	320400	Mm.417608	NR_033564	ENSMUSG00000097325	Gm16897	C030002c11rik	predicted gene, 16897	ncRNA	0.040000	0.572139	
mm_88048.1	chr10	67539766	67539966	+	1	NA	NA	NA	1936	NM_001347458	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.020000	0.527363	
mm_136265.1	chr16	91043752	91043952	-	1	NA	NA	NA	527	NM_026110	67367	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.055000	0.636816	
mm_75149.1	chr8	36096596	36096796	-	1	NA	NA	NA	1868	NM_172911	244418	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.010000	0.477612	
mm_134766.1	chr16	23520526	23520726	-	1	NA	NA	NA	-36	NM_008555	17174	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0.020000	0.552239	
mm_123509.1	chr14	66235574	66235774	-	1	NA	NA	NA	-22122	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.005000	0.472637	
mm_160542.1	chr9	44268503	44268703	-	1	NA	NA	NA	-4	NM_001163742	270151	Mm.3957	NM_178420	ENSMUSG00000032109	Nlrx1	BC034204|NOD9	NLR family member X1	protein-coding	0.015000	0.522388	
mm_142281.1	chr17	40221864	40222064	-	1	NA	NA	NA	-13355	NM_031190	18663	Mm.717	NM_031190	ENSMUSG00000031233	Pgk2	Pgk-2|Tcp-2	phosphoglycerate kinase 2	protein-coding	0.000000	0.263682	
mm_152705.1	chr19	17341944	17342144	-	1	NA	NA	NA	-2539	NM_001136484	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.010000	0.527363	
mm_103041.1	chr11	69761868	69762068	-	1	NA	NA	NA	-124	NM_019871	56293	Mm.6211	NM_019871	ENSMUSG00000018776	Slc35g3	Amac1	solute carrier family 35, member G3	protein-coding	0.005000	0.437811	
mm_159827.1	chr5	124354554	124354754	-	1	NA	NA	NA	-26	NM_013812	13445	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0.175000	0.796020	
mm_19878.1	chr2	114049218	114049418	-	1	NA	NA	NA	3557	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.030000	0.482587	
mm_28168.1	chr3	87870027	87870227	-	1	NA	NA	NA	15435	NM_033573	94315	Mm.35089	NM_033573	ENSMUSG00000004895	Prcc	-	papillary renal cell carcinoma (translocation-associated)	protein-coding	0.020000	0.492537	
mm_56912.1	chr6	119330606	119330806	-	1	NA	NA	NA	60	NM_172492	211187	Mm.121498	NM_172492	ENSMUSG00000055003	Lrtm2	A230084J22|AI841794	leucine-rich repeats and transmembrane domains 2	protein-coding	0.080000	0.671642	
mm_17892.1	chr2	35061325	35061525	-	1	NA	NA	NA	16	NM_010406	15139	Mm.2168	NM_010406	ENSMUSG00000026874	Hc	C5|C5a|He	hemolytic complement	protein-coding	0.010000	0.393035	-19(TTATTTAAAAGG,-,0.00)
mm_140066.1	chr17	74820644	74820844	+	1	NA	NA	NA	102994	NM_152817	74196	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0.015000	0.462687	
mm_147883.1	chr18	64660938	64661138	-	1	NA	NA	NA	-38	NM_001001488	54670	Mm.270043	NM_001001488	ENSMUSG00000039529	Atp8b1	AI451886|FIC1|Ic	ATPase, class I, type 8B, member 1	protein-coding	0.090000	0.736318	
mm_12733.1	chr2	78869210	78869410	+	1	NA	NA	NA	263	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.125000	0.736318	
mm_114084.1	chr13	54581599	54581799	+	1	NA	NA	NA	6686	NM_019968	56795	Mm.89484	NM_019968	ENSMUSG00000025870	Arl10	Arl10a|Arm1	ADP-ribosylation factor-like 10	protein-coding	0.005000	0.452736	
mm_16836.1	chr2	11498349	11498549	-	1	NA	NA	NA	3641	NM_001177754	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.000000	0.427861	
mm_72206.1	chr8	72584613	72584813	+	1	NA	NA	NA	12610	NM_144534	74166	Mm.212927	NM_144534	ENSMUSG00000031791	Tmem38a	1110001E17Rik|AI413399|TRIC-A|mg33a	transmembrane protein 38A	protein-coding	0.015000	0.532338	
mm_74965.1	chr8	26976867	26977067	-	1	NA	NA	NA	-369	NM_001101502	353310	Mm.212469	NM_001101502	ENSMUSG00000085795	Zfp703	1110032O19Rik|AI430822|AL022941|Csmn1|End2|Zeppo1|Znf703|Zpo1	zinc finger protein 703	protein-coding	0.115000	0.746269	-30(GAGTCTTAAAGC,-,0.00)
mm_68161.1	chr7	102759396	102759596	-	1	NA	NA	NA	-25	NM_001168503	170639	Mm.184372	NM_130866	ENSMUSG00000043366	Olfr78	4633402A21Rik|MOL2.3|MOR18-2|Or51e2|PSGR|RA1c	olfactory receptor 78	protein-coding	0.020000	0.482587	
mm_153262.1	chr19	36919556	36919756	-	1	NA	NA	NA	-57	NM_028263	72514	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0.020000	0.477612	
mm_162140.1	chrX	74270865	74271065	+	1	NA	NA	NA	149	NM_052835	110954	Mm.100113	NM_052835	ENSMUSG00000008682	Rpl10	D0HXS648|DXHXS648|DXHXS648E|QM|QM16	ribosomal protein L10	protein-coding	0.060000	0.477612	
mm_44361.1	chr5	17805965	17806165	-	1	NA	NA	NA	29831	NM_001159555	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.010000	0.318408	
mm_151727.1	chr19	4867932	4868132	-	1	NA	NA	NA	9877	NM_013456	11474	Mm.5316	NM_013456	ENSMUSG00000006457	Actn3	-	actinin alpha 3	protein-coding	0.050000	0.601990	
mm_81310.1	chr9	108392732	108392932	+	1	NA	NA	NA	-2	NM_053216	112418	Mm.78287	NM_053216	ENSMUSG00000032611	1700102P08Rik	AI593206	RIKEN cDNA 1700102P08 gene	protein-coding	0.045000	0.597015	
mm_106790.1	chr12	4780394	4780594	+	1	NA	NA	NA	11199	NM_028376	382562	Mm.251575	NM_028376	ENSMUSG00000020639	Pfn4	2900024P18Rik	profilin family, member 4	protein-coding	0.005000	0.477612	43(GCTTTTAAAATG,+,0.00)
mm_82390.1	chr9	14675923	14676123	-	1	NA	NA	NA	-61023	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.020000	0.552239	
mm_34130.1	chr4	139280422	139280622	+	1	NA	NA	NA	30178	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.030000	0.582090	
mm_106677.1	chr11	121830046	121830246	-	1	NA	NA	NA	-72	NM_029049	74675	Mm.61213	NM_029049	ENSMUSG00000039198	Ptchd3	4930451E13Rik|4933440L20Rik|RNDEu-3	patched domain containing 3	protein-coding	0.060000	0.616915	
mm_90428.1	chr10	127514865	127515065	+	1	NA	NA	NA	26	NM_001098789	407790	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0.020000	0.577114	
mm_148043.1	chr18	70472274	70472474	-	1	NA	NA	NA	-80	NM_029019	170461	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	0.125000	0.641791	56(CGCTTTAAAAAA,-,0.00)
mm_1694.1	chr1	75142630	75142830	+	1	NA	NA	NA	-56	NM_170755	227298	Mm.273062	NM_170755	ENSMUSG00000049339	Fam134a	-	family with sequence similarity 134, member A	protein-coding	0.145000	0.701493	
mm_65338.1	chr7	24978459	24978659	-	1	NA	NA	NA	-5831	NM_010261	14470	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.025000	0.557214	
mm_57366.1	chr6	124769421	124769621	-	1	NA	NA	NA	152	NM_001302642	13807	Mm.3913	NM_013509	ENSMUSG00000004267	Eno2	AI837106|D6Ertd375e|Eno-2|NSE	enolase 2, gamma neuronal	protein-coding	0.120000	0.751244	-66(GGCTCTATAGGC,-,0.00)
mm_158981.1	chr1	126382234	126382434	-	1	NA	NA	NA	110593	NM_172484	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.000000	0.427861	
mm_23063.1	chr3	35937448	35937648	+	1	NA	NA	NA	-4582	NM_001205361	114893	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.015000	0.492537	
mm_12546.1	chr2	72390648	72390848	+	1	NA	NA	NA	-85471	NM_025866	66953	Mm.270676	NM_025866	ENSMUSG00000055612	Cdca7	2310021G01Rik|AU044109|JPO1	cell division cycle associated 7	protein-coding	0.025000	0.547264	
mm_133873.1	chr16	96372794	96372994	+	1	NA	NA	NA	11130	NM_028078	72058	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.015000	0.472637	
mm_112603.1	chr13	14176008	14176208	+	1	NA	NA	NA	112324	NM_198122	94246	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.010000	0.338308	
mm_67434.1	chr7	80384441	80384641	-	1	NA	NA	NA	3405	NM_010194	14159	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.025000	0.497512	
mm_66129.1	chr7	31054727	31054927	-	1	NA	NA	NA	26	NM_052991	56188	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	0.030000	0.631841	
mm_168539.1	chr1	161932732	161932932	+	1	NA	NA	NA	36316	NM_001204905	75368	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	0.040000	0.572139	
mm_118335.1	chr13	114149655	114149855	-	1	NA	NA	NA	1837	NR_045836	319803	Mm.386896	NM_177004		A430090L17Rik	-	RIKEN cDNA A430090L17 gene	ncRNA	0.020000	0.472637	
mm_92598.1	chr10	80102546	80102746	-	1	NA	NA	NA	56	NM_183426	216161	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch homolog 2 (Drosophila)	protein-coding	0.145000	0.716418	
mm_146742.1	chr18	15403596	15403796	-	1	NA	NA	NA	62	NM_001317729	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.020000	0.532338	
mm_154964.1	chrX	36983826	36984026	+	1	NA	NA	NA	5769	NM_001177324	56526	Mm.260036	NM_019942	ENSMUSG00000050379	Sept6	2810035H17Rik|C920001C06Rik|Sep6|mKIAA0128	septin 6	protein-coding	0.020000	0.572139	
mm_69388.1	chr7	131362606	131362806	-	1	NA	NA	NA	-8	NM_026655	68277	Mm.121122	NM_026655	ENSMUSG00000040177	2310057M21Rik	3110040E10Rik|AI429544	RIKEN cDNA 2310057M21 gene	protein-coding	0.090000	0.641791	
mm_166033.1	chr4	126808486	126808686	+	1	NA	NA	NA	54816	NM_001035526	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.000000	0.328358	
mm_16874.1	chr2	12301901	12302101	-	1	NA	NA	NA	-57	NM_001001309	241226	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0.100000	0.691542	
mm_77562.1	chr8	123427626	123427826	-	1	NA	NA	NA	-15230	NM_001253784	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.025000	0.522388	
mm_117375.1	chr13	72263864	72264064	-	1	NA	NA	NA	-300241	NM_010573	16371	Mm.316056	NM_010573	ENSMUSG00000060969	Irx1	-	Iroquois related homeobox 1 (Drosophila)	protein-coding	0.000000	0.542289	
mm_144745.1	chr18	35598563	35598763	+	1	NA	NA	NA	-4	NM_026420	67869	Mm.126534	NM_026420	ENSMUSG00000037058	Paip2	2310050K10Rik|AU045972	polyadenylate-binding protein-interacting protein 2	protein-coding	0.100000	0.666667	
mm_168693.1	chr11	97187850	97188050	-	1	NA	NA	NA	-58	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.120000	0.716418	
mm_73706.1	chr8	111687024	111687224	+	1	NA	NA	NA	2550	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.045000	0.631841	
mm_14776.1	chr2	145822091	145822291	+	1	NA	NA	NA	36075	NM_028724	74030	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.030000	0.487562	
mm_108563.1	chr12	84761492	84761692	+	1	NA	NA	NA	11520	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.020000	0.497512	16(CTTTTTAGACAC,+,0.00)
mm_103155.1	chr11	70407041	70407241	-	1	NA	NA	NA	2890	NM_029231	75273	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	0.025000	0.422886	
mm_118201.1	chr13	108044228	108044428	-	1	NA	NA	NA	-146	NM_001048250	75616	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	0.160000	0.761194	
mm_9572.1	chr1	173979809	173980009	-	1	NA	NA	NA	2935	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.005000	0.393035	
mm_121508.1	chr14	121950000	121950200	+	1	NA	NA	NA	15093	NM_183031	321019	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.005000	0.522388	
mm_95952.1	chr11	58390533	58390733	+	1	NA	NA	NA	9987	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.010000	0.482587	
mm_150201.1	chr19	32758268	32758468	+	1	NA	NA	NA	791	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|TEP1	phosphatase and tensin homolog	protein-coding	0.045000	0.606965	
mm_116984.1	chr13	56296259	56296459	-	1	NA	NA	NA	192	NM_019568	57266	Mm.30211	NM_019568	ENSMUSG00000021508	Cxcl14	1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine	chemokine (C-X-C motif) ligand 14	protein-coding	0.095000	0.631841	-65(GAATTTAAAAGA,-,0.00)
mm_141191.1	chr17	26956820	26957020	-	1	NA	NA	NA	-8801	NR_037244	100526534		NR_037244	ENSMUSG00000093118	Mir3083	mir-3083|mmu-mir-3083	microRNA 3083	ncRNA	0.035000	0.482587	
mm_86022.1	chr9	112235792	112235992	-	1	NA	NA	NA	-1051	NM_001177619	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.020000	0.601990	
mm_113624.1	chr13	41639446	41639646	+	1	NA	NA	NA	-9897	NM_177808	328231	Mm.227476	NM_177808	ENSMUSG00000054258	Gm5082	A030008J09|EG328231	predicted gene 5082	protein-coding	0.005000	0.388060	
mm_155124.1	chrX	48871982	48872182	+	1	NA	NA	NA	5631	NM_001085499	209005	Mm.336054	NM_001085499	ENSMUSG00000079606	Gm595	-	predicted gene 595	protein-coding	0.010000	0.462687	
mm_118728.1	chr14	22240570	22240770	+	1	NA	NA	NA	220958	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.462687	
mm_98756.1	chr11	96545545	96545745	+	1	NA	NA	NA	81054	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.005000	0.442786	
mm_123992.1	chr14	75761112	75761312	-	1	NA	NA	NA	-6719	NM_177381	338337	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0.010000	0.422886	
mm_56951.1	chr6	119992389	119992589	-	1	NA	NA	NA	41822	NR_030487	735290		NR_030487	ENSMUSG00000076217	Mir706	Mirn706|mir-706|mmu-mir-706	microRNA 706	ncRNA	0.020000	0.407960	-13(ATCCTTAAAGGG,-,0.00),-11(CCTTAAAGGGCT,+,0.00)
mm_7678.1	chr1	128589166	128589366	-	1	NA	NA	NA	3033	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.035000	0.542289	
mm_1744.1	chr1	75479412	75479612	+	1	NA	NA	NA	-20	NM_177056	319998	Mm.44401	NM_177056	ENSMUSG00000051703	Tmem198	A230078I05Rik|Tmem198-1|Tmem198a	transmembrane protein 198	protein-coding	0.075000	0.711443	
mm_42739.1	chr5	120655287	120655487	+	1	NA	NA	NA	6199	NM_001281999	19415	Mm.41209	NM_013832	ENSMUSG00000029602	Rasal1	MRASAL	RAS protein activator like 1 (GAP1 like)	protein-coding	0.010000	0.462687	
mm_135203.1	chr16	36561508	36561708	-	1	NA	NA	NA	526	NM_013803	12374	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.050000	0.606965	
mm_66142.1	chr7	31126666	31126866	-	1	NA	NA	NA	257	NM_011322	20266	Mm.1418	NM_011322	ENSMUSG00000019194	Scn1b	-	sodium channel, voltage-gated, type I, beta	protein-coding	0.145000	0.815920	
mm_71788.1	chr8	66697375	66697575	+	1	NA	NA	NA	53	NM_010934	18166	Mm.5112	NM_010934	ENSMUSG00000036437	Npy1r	Npyr|Y1-R	neuropeptide Y receptor Y1	protein-coding	0.025000	0.432836	-87(CGGCTTTAAGGG,-,0.00),-86(GGCTTTAAGGGG,-,0.00),-85(GCTTTAAGGGGG,+,0.00),37(TTCTTTAAAAGG,-,0.00),38(TCTTTAAAAGGT,+,0.00),63(GTGTTTTTAAGG,-,0.00),65(GTTTTTAAGGGA,+,0.00)
mm_888.1	chr1	52844947	52845147	+	1	NA	NA	NA	9	NM_146108	227095	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	0.055000	0.621891	
mm_117191.1	chr13	63566070	63566270	-	1	NA	NA	NA	-435	NM_008957	19206	Mm.228798	NM_008957	ENSMUSG00000021466	Ptch1	A230106A15Rik|Ptc|Ptc1|Ptch|mes	patched 1	protein-coding	0.065000	0.592040	
mm_124410.1	chr14	115701614	115701814	-	1	NA	NA	NA	-292162	NR_045761	75088	Mm.444706	NR_045761	ENSMUSG00000093551	4930505G20Rik	-	RIKEN cDNA 4930505G20 gene	ncRNA	0.010000	0.462687	-36(GCACATAAATGG,-,0.00)
mm_126181.1	chr15	78608022	78608222	+	1	NA	NA	NA	11075	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.010000	0.577114	
mm_110329.1	chr12	35047701	35047901	-	1	NA	NA	NA	612	NM_001014973	217463	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0.065000	0.676617	
mm_29072.1	chr3	103858203	103858403	-	1	NA	NA	NA	-1492	NR_104070	19260	Mm.395	NM_008979	ENSMUSG00000027843	Ptpn22	70zpep|PEP|Ptpn8	protein tyrosine phosphatase, non-receptor type 22 (lymphoid)	protein-coding	0.010000	0.393035	
mm_81889.1	chr9	119402091	119402291	+	1	NA	NA	NA	13	NM_007397	11481	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	0.110000	0.741294	
mm_40569.1	chr5	63649243	63649443	+	1	NA	NA	NA	240	NM_177006	319807	Mm.319487	NM_028470	ENSMUSG00000090061	Nwd2	3110047P20Rik|B830017A01Rik|Hn1-ps2|mKIAA1239	NACHT and WD repeat domain containing 2	protein-coding	0.090000	0.626866	71(GCTTTAATGCTC,+,0.00)
mm_7431.1	chr1	119837570	119837770	-	1	NA	NA	NA	-599	NM_019933	19258	Mm.458796	NM_019933	ENSMUSG00000026384	Ptpn4	PTPMEG|Ptn4|TEP|TEP/mPTPMEG|hPTP-MEG	protein tyrosine phosphatase, non-receptor type 4	protein-coding	0.085000	0.656716	
mm_70931.1	chr8	25814435	25814635	+	1	NA	NA	NA	6061	NM_011485	20845	Mm.293314	NM_011485	ENSMUSG00000031574	Star	AV363654|D8Ertd419e|stARD1	steroidogenic acute regulatory protein	protein-coding	0.000000	0.393035	
mm_63236.1	chr7	126558852	126559052	+	1	NA	NA	NA	7414	NM_146200	56347	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.035000	0.527363	
mm_143666.1	chr17	79882251	79882451	-	1	NA	NA	NA	13772	NM_178050	56298	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.010000	0.472637	
mm_145938.1	chr18	67308452	67308652	+	1	NA	NA	NA	19329	NM_053261	114663	Mm.34079	NM_053261	ENSMUSG00000024525	Impa2	2210415D20Rik|AI326924|AW259601	inositol (myo)-1(or 4)-monophosphatase 2	protein-coding	0.020000	0.472637	-89(GTTTTTAAAGCT,+,0.00)
mm_83872.1	chr9	55026538	55026738	-	1	NA	NA	NA	-79	NM_145129	110834	Mm.63569	NM_145129	ENSMUSG00000032303	Chrna3	(a)3|A730007P14Rik|Acra-3|Acra3	cholinergic receptor, nicotinic, alpha polypeptide 3	protein-coding	0.070000	0.666667	
mm_125761.1	chr15	73957040	73957240	+	1	NA	NA	NA	-117469	NM_001033365	268816	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding	0.000000	0.398010	51(GAGTATATATGG,-,0.00)
mm_121904.1	chr14	21985555	21985755	-	1	NA	NA	NA	3946	NM_145459	218820	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.060000	0.671642	
mm_1325.1	chr1	65102956	65103156	+	1	NA	NA	NA	307	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.050000	0.582090	
mm_110846.1	chr12	73046762	73046962	-	1	NA	NA	NA	-150	NM_009189	20471	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0.095000	0.706468	
mm_51988.1	chr6	92091418	92091618	+	1	NA	NA	NA	100	NM_011630	22026	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.140000	0.731343	
mm_75206.1	chr8	39605142	39605342	-	1	NA	NA	NA	37436	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.263682	
mm_98621.1	chr11	95858767	95858967	+	1	NA	NA	NA	50	NR_045187	73906	Mm.399894	NR_045187	ENSMUSG00000086015	4833417C18Rik	-	RIKEN cDNA 4833417C18 gene	ncRNA	0.080000	0.601990	
mm_45678.1	chr5	77310308	77310508	-	1	NA	NA	NA	-76	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.075000	0.572139	
mm_18069.1	chr2	42256530	42256730	-	1	NA	NA	NA	190938	NR_105754	102465171		NR_105754	ENSMUSG00000098660	Mir6336	Gm27584|mmu-mir-6336	microRNA 6336	ncRNA	0.000000	0.293532	-77(GAGTTTTAAAGC,-,0.00)
mm_82396.1	chr9	14740548	14740748	-	1	NA	NA	NA	85	NM_177905	330890	Mm.334969	NM_177905	ENSMUSG00000036912	Piwil4	9230101H05Rik|Miwi2	piwi-like RNA-mediated gene silencing 4	protein-coding	0.050000	0.592040	
mm_139648.1	chr17	57386578	57386778	+	1	NA	NA	NA	27992	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.268657	
mm_130163.1	chr15	91632422	91632622	-	1	NA	NA	NA	-40702	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.015000	0.383085	
mm_25031.1	chr3	98149766	98149966	+	1	NA	NA	NA	-10768	NM_027665	71078	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.015000	0.318408	
mm_108046.1	chr12	73907961	73908161	+	1	NA	NA	NA	194	NM_001313919	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.110000	0.726368	
mm_115824.1	chr13	20885807	20886007	-	1	NA	NA	NA	91794	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.442786	
mm_2579.1	chr1	118482090	118482290	+	1	NA	NA	NA	-22925	NR_027901	68204	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.015000	0.388060	86(GACCTTAAAAGA,-,0.00)
mm_6230.1	chr1	66937456	66937656	-	1	NA	NA	NA	-2190	NM_001113387	17901	Mm.1000	NM_021285	ENSMUSG00000061816	Myl1	AI325107|MLC1f|MLC3f|Mylf	myosin, light polypeptide 1	protein-coding	0.010000	0.432836	
mm_9045.1	chr1	167284544	167284744	-	1	NA	NA	NA	483	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.155000	0.786070	
mm_59828.1	chr7	29291278	29291478	+	1	NA	NA	NA	2058	NM_026731	68458	Mm.2343	NM_026731	ENSMUSG00000037166	Ppp1r14a	1110001M11Rik|Cpi17	protein phosphatase 1, regulatory (inhibitor) subunit 14A	protein-coding	0.015000	0.636816	
mm_119351.1	chr14	41110972	41111172	+	1	NA	NA	NA	6039	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.010000	0.512438	
mm_45684.1	chr5	77351257	77351457	-	1	NA	NA	NA	40873	NM_153798	231329	Mm.273217	NM_153798	ENSMUSG00000029250	Polr2b	Pol2rb|Rpb140|Rpb2	polymerase (RNA) II (DNA directed) polypeptide B	protein-coding	0.035000	0.532338	
mm_8501.1	chr1	153900378	153900578	-	1	NA	NA	NA	549	NM_008131	14645	Mm.210745	NM_008131	ENSMUSG00000026473	Glul	GS|Glns	glutamate-ammonia ligase (glutamine synthetase)	protein-coding	0.075000	0.641791	
mm_134427.1	chr16	17921834	17922034	-	1	NA	NA	NA	6285	NM_153150	13358	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0.090000	0.621891	
mm_87582.1	chr10	56504455	56504655	+	1	NA	NA	NA	127255	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.045000	0.552239	
mm_160220.1	chr7	101004030	101004230	-	1	NA	NA	NA	7868	NM_001302347	18442	Mm.3000	NM_008773	ENSMUSG00000032860	P2ry2	P2U1|P2Y2	purinergic receptor P2Y, G-protein coupled 2	protein-coding	0.010000	0.497512	
mm_15700.1	chr2	163820763	163820963	+	1	NA	NA	NA	29	NM_016873	22403	Mm.13828	NM_016873	ENSMUSG00000027656	Wisp2	Ccn5|Crgr4|Ctgfl|Rcop1	WNT1 inducible signaling pathway protein 2	protein-coding	0.020000	0.641791	
mm_57562.1	chr6	127125423	127125623	-	1	NA	NA	NA	-15971	NM_177003	319801	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	0.015000	0.388060	2(GCTTTAAGAGTG,+,0.00)
mm_99717.1	chr11	106276570	106276770	+	1	NA	NA	NA	-2	NM_029467	75870	Mm.159608	NM_029467	ENSMUSG00000020712	Tcam1	4930570F09Rik|AI429105	testicular cell adhesion molecule 1	protein-coding	0.085000	0.601990	
mm_126448.1	chr15	80762341	80762541	+	1	NA	NA	NA	-36169	NM_177124	213988	Mm.131328	NM_144812	ENSMUSG00000047888	Tnrc6b	2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik	trinucleotide repeat containing 6b	protein-coding	0.020000	0.502488	
mm_91470.1	chr10	34207089	34207289	-	1	NA	NA	NA	362	NM_172508	212898	Mm.34557	NM_172508	ENSMUSG00000039497	Dse	6030499O08|AI480506|B130024B19Rik|DS-epi1|Sart2	dermatan sulfate epimerase	protein-coding	0.130000	0.776119	
mm_44874.1	chr5	34634771	34634971	-	1	NA	NA	NA	2243	NM_026660	68294	Mm.34564	NM_026660	ENSMUSG00000001082	Mfsd10	0610009O03Rik|Tetran	major facilitator superfamily domain containing 10	protein-coding	0.020000	0.542289	
mm_77947.1	chr9	7358421	7358621	+	1	NA	NA	NA	11147	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.323383	
mm_118763.1	chr14	22438573	22438773	+	1	NA	NA	NA	104125	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.005000	0.507463	
mm_70339.1	chr8	4524805	4525005	+	1	NA	NA	NA	31500	NM_026058	67260	Mm.35511	NM_026058	ENSMUSG00000008206	Cers4	2900019C14Rik|Lass4|Trh1	ceramide synthase 4	protein-coding	0.010000	0.417910	
mm_57891.1	chr6	131368384	131368584	-	1	NA	NA	NA	19966	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.060000	0.562189	
mm_19963.1	chr2	117965692	117965892	-	1	NA	NA	NA	143864	NR_040631	73938	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0.015000	0.348259	
mm_25439.1	chr3	108093015	108093215	+	1	NA	NA	NA	49	NM_008141	14686	Mm.439652	NM_008141	ENSMUSG00000009108	Gnat2	AW490837|Gnat-2|Gt-2|Tcalpha	guanine nucleotide binding protein, alpha transducing 2	protein-coding	0.035000	0.477612	
mm_18524.1	chr2	63123807	63124007	-	1	NA	NA	NA	60380	NM_133207	170738	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.010000	0.407960	
mm_84688.1	chr9	72154234	72154434	-	1	NA	NA	NA	-42515	NM_001253865	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.010000	0.512438	
mm_52697.1	chr6	119215239	119215439	+	1	NA	NA	NA	-18930	NM_001255999	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.035000	0.656716	
mm_128495.1	chr15	51896937	51897137	-	1	NA	NA	NA	19596	NM_030132	78581	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	0.010000	0.452736	
mm_145959.1	chr18	67774805	67775005	+	1	NA	NA	NA	29	NM_001039088	72124	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	0.175000	0.810945	
mm_11809.1	chr2	43932078	43932278	+	1	NA	NA	NA	133146	NR_040622	320872	Mm.445023	NR_040622	ENSMUSG00000085089	Arhgap15os	A430092G05Rik	Rho GTPase activating protein 15, opposite strand	ncRNA	0.025000	0.323383	
mm_130902.1	chr15	102405498	102405698	-	1	NA	NA	NA	-718	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.050000	0.606965	
mm_105612.1	chr11	106786643	106786843	-	1	NA	NA	NA	1751	NM_007840	13207	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0.000000	0.333333	
mm_41298.1	chr5	90464794	90464994	+	1	NA	NA	NA	4024	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.005000	0.442786	
mm_55925.1	chr6	84106889	84107089	-	1	NA	NA	NA	87603	NM_021469	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.015000	0.557214	
mm_21191.1	chr2	155381584	155381784	-	1	NA	NA	NA	-172	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.075000	0.641791	
mm_80887.1	chr9	99304761	99304961	+	1	NA	NA	NA	53669	NM_177775	272636	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0.010000	0.487562	
mm_167822.1	chr9	124422647	124422847	-	1	NA	NA	NA	-504	NR_027950	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.085000	0.726368	
mm_78231.1	chr9	21592834	21593034	+	1	NA	NA	NA	-103	NM_001205157	74766	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	0.075000	0.562189	36(GGCTCTTAAGAG,-,0.00)
mm_93091.1	chr10	89631914	89632114	-	1	NA	NA	NA	-10765	NM_182959	216227	Mm.233921	NM_182959	ENSMUSG00000019935	Slc17a8	BC042593|Vglut3	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8	protein-coding	0.015000	0.422886	
mm_123205.1	chr14	59365326	59365526	-	1	NA	NA	NA	64	NM_199015	219132	Mm.479285	NM_199015	ENSMUSG00000068245	Phf11d	D14Ertd668e|Phf11|Phf11l	PHD finger protein 11D	protein-coding	0.025000	0.502488	
mm_96820.1	chr11	69994491	69994691	+	1	NA	NA	NA	-1175	NM_001291125	78246	Mm.20805	NM_030064	ENSMUSG00000018572	Phf23	JUNE-1	PHD finger protein 23	protein-coding	0.015000	0.527363	
mm_25188.1	chr3	103386785	103386985	+	1	NA	NA	NA	107592	NM_001079830	94093	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.040000	0.517413	
mm_129728.1	chr15	82016110	82016310	-	1	NA	NA	NA	-70	NM_134095	28075	Mm.474453	NM_134095	ENSMUSG00000022472	Desi1	AI427858|AI850401|D15Wsu75e|DeSI-1|Fam152b|Pppde2	desumoylating isopeptidase 1	protein-coding	0.105000	0.651741	
mm_62444.1	chr7	101383873	101384073	+	1	NA	NA	NA	-1553	NM_027180	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.015000	0.587065	
mm_10621.1	chr2	19445542	19445742	+	1	NA	NA	NA	-21	NM_018809	19213	Mm.69647	NM_018809	ENSMUSG00000026735	Ptf1a	PTF1-p48|PTF1p48|bHLHa29	pancreas specific transcription factor, 1a	protein-coding	0.105000	0.701493	
mm_141338.1	chr17	28515436	28515636	-	1	NA	NA	NA	-15325	NM_026290	67645	Mm.46170	NM_026290	ENSMUSG00000024223	Armc12	4930511I11Rik|AV041658	armadillo repeat containing 12	protein-coding	0.015000	0.552239	
mm_67020.1	chr7	65894190	65894390	-	1	NA	NA	NA	32154	NM_011048	18553	Mm.294007	NM_011048	ENSMUSG00000030513	Pcsk6	C86343|Pace4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding	0.000000	0.378109	-24(TTCTATATGAGG,-,0.00)
mm_147259.1	chr18	38642482	38642682	-	1	NA	NA	NA	-41314	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.030000	0.532338	
mm_169402.1	chr14	50466237	50466437	+	1	NA	NA	NA	-6720	NM_207133	258233	Mm.377278	NM_207133	ENSMUSG00000095765	Olfr741	GA_x5J8B7TYL6J-3-280|GA_x5J8B7U07Q4-325-757|GA_x6K02T2PMLR-6197851-6198786|MOR106-10|MOR106-15	olfactory receptor 741	protein-coding	0.055000	0.522388	-41(AACTTTAAATGG,-,0.00)
mm_6024.1	chr1	59161476	59161676	-	1	NA	NA	NA	60	NM_145143	227157	Mm.474049	NM_145143	ENSMUSG00000079550	Mpp4	Dlg6	membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)	protein-coding	0.010000	0.527363	
mm_139071.1	chr17	46650459	46650659	+	1	NA	NA	NA	221	NM_025611	66515	Mm.329078	NM_025611	ENSMUSG00000038545	Cul7	2510004L20Rik|AA409809|C230011P08Rik|p185|p193	cullin 7	protein-coding	0.090000	0.736318	
mm_42631.1	chr5	118437390	118437590	+	1	NA	NA	NA	-123229	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.020000	0.487562	
mm_59561.1	chr7	28086238	28086438	+	1	NA	NA	NA	15102	NM_001122603	215384	Mm.292276	NM_175444	ENSMUSG00000047730	Fcgbp	A430096B05Rik	Fc fragment of IgG binding protein	protein-coding	0.040000	0.606965	
mm_26679.1	chr3	155093492	155093692	+	1	NA	NA	NA	158	NM_028938	74435	Mm.195711	NM_028938	ENSMUSG00000028182	Lrriq3	4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44	leucine-rich repeats and IQ motif containing 3	protein-coding	0.085000	0.651741	
mm_80271.1	chr9	72970141	72970341	+	1	NA	NA	NA	11456	NM_001163725	67685	Mm.31817	NM_026314	ENSMUSG00000089865	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0.015000	0.507463	38(GCCTTTTTATGC,-,0.00),40(CTTTTTATGCTG,+,0.00)
mm_156166.1	chrX	130048804	130049004	+	1	NA	NA	NA	299162	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.010000	0.407960	
mm_128648.1	chr15	59604212	59604412	-	1	NA	NA	NA	-44342	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.015000	0.407960	18(GCTTTTAAATGC,+,0.00),18(GCTTTTAAATGC,-,0.00)
mm_122206.1	chr14	31830321	31830521	-	1	NA	NA	NA	-6	NM_001024604	105522	Mm.37660	NM_001024604	ENSMUSG00000014496	Ankrd28	AI465466|AI604979|E430019N21Rik|mKIAA0379	ankyrin repeat domain 28	protein-coding	0.155000	0.756219	
mm_29780.1	chr3	127408929	127409129	-	1	NA	NA	NA	29	NM_001327939	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.030000	0.582090	
mm_163536.1	chr13	13480904	13481104	+	1	NA	NA	NA	43402	NM_010917	18073	Mm.4691	NM_010917	ENSMUSG00000005397	Nid1	A630025O17|Nid|entactin|entactin-1|nidogen-1	nidogen 1	protein-coding	0.000000	0.497512	
mm_103651.1	chr11	78972962	78973162	-	1	NA	NA	NA	11862	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.015000	0.547264	
mm_98763.1	chr11	96574797	96574997	+	1	NA	NA	NA	110306	NM_001177898	78473	Mm.395840	NM_001033186	ENSMUSG00000057058	Skap1	1700091G21Rik|Scap1|Skap-55	src family associated phosphoprotein 1	protein-coding	0.015000	0.378109	
mm_63909.1	chr7	139214596	139214796	+	1	NA	NA	NA	-1389	NM_001162540	57740	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	0.015000	0.601990	
mm_7046.1	chr1	87125648	87125848	-	1	NA	NA	NA	740	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.045000	0.582090	
mm_141685.1	chr17	33951001	33951201	-	1	NA	NA	NA	387	NM_019420	54218	Mm.11132	NM_019420	ENSMUSG00000067370	B3galt4	Gal-T2|Galt2	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 4	protein-coding	0.040000	0.661692	
mm_74388.1	chr8	128732734	128732934	+	1	NA	NA	NA	47180	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.000000	0.368159	
mm_159591.1	chr4	123684010	123684210	-	1	NA	NA	NA	250	NM_001199137	11426	Mm.402299	NM_009600	ENSMUSG00000028649	Macf1	ABP620|Acf7|Aclp7|MACF|R74989|mKIAA0465	microtubule-actin crosslinking factor 1	protein-coding	0.035000	0.567164	
mm_169870.1	chr16	35871310	35871510	-	1	NA	NA	NA	-28	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.050000	0.507463	
mm_70427.1	chr8	11497534	11497734	+	1	NA	NA	NA	66	NM_026995	69225	Mm.64911	NM_026995	ENSMUSG00000031505	Naxd	0710008K08Rik|2810407E01Rik|Carkd	NAD(P)HX dehydratase	protein-coding	0.150000	0.736318	
mm_134534.1	chr16	19673076	19673276	-	1	NA	NA	NA	33189	NM_177356	239739	Mm.258059	NM_177356	ENSMUSG00000041247	Lamp3	1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403	lysosomal-associated membrane protein 3	protein-coding	0.005000	0.432836	19(TCATTTAAACGC,+,0.00)
mm_2994.1	chr1	133204593	133204793	+	1	NA	NA	NA	-41404	NM_001160268	240753	Mm.253559	NM_182930	ENSMUSG00000041757	Plekha6	9530028L01Rik|AU042621|Pepp3	pleckstrin homology domain containing, family A member 6	protein-coding	0.020000	0.577114	
mm_142834.1	chr17	51782836	51783036	-	1	NA	NA	NA	29118	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.030000	0.597015	
mm_20364.1	chr2	128339390	128339590	-	1	NA	NA	NA	89861	NR_028591	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.015000	0.482587	-39(CCCTTTAGGGAA,+,0.00)
mm_32249.1	chr4	102570298	102570498	+	1	NA	NA	NA	338	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.015000	0.507463	
mm_28387.1	chr3	90014330	90014530	-	1	NA	NA	NA	-3220	NR_106129	102465771		NR_106129	ENSMUSG00000098397	Mir7669	Gm27996|mmu-mir-7669	microRNA 7669	ncRNA	0.005000	0.293532	-1(GGCCTTTTAAGA,-,0.00),1(CCTTTTAAGAAC,+,0.00)
mm_115987.1	chr13	24328949	24329149	-	1	NA	NA	NA	1645	NM_001111110	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.025000	0.522388	-15(GGACCTAAAAGG,-,0.00)
mm_93250.1	chr10	95447890	95448090	-	1	NA	NA	NA	30615	NR_045338	70523	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	0.055000	0.582090	
mm_75644.1	chr8	65037055	65037255	-	1	NA	NA	NA	181	NM_001297554	100038489	Mm.58847	NM_001297554	ENSMUSG00000079042	Apela	ENSMUSG00000074303|Ela|Ende|Gm10664	apelin receptor early endogenous ligand	protein-coding	0.025000	0.542289	
mm_124055.1	chr14	77874960	77875160	-	1	NA	NA	NA	-143	NM_025384	66148	Mm.248046	NM_025384	ENSMUSG00000022013	Dnajc15	1110003P16Rik|Dnajd1	DnaJ heat shock protein family (Hsp40) member C15	protein-coding	0.035000	0.512438	
mm_53531.1	chr6	136576234	136576434	+	1	NA	NA	NA	57483	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.010000	0.383085	
mm_165751.1	chr3	108199821	108200021	+	1	NA	NA	NA	913	NM_028061	72023	Mm.246391	NM_028061	ENSMUSG00000048796	Cyb561d1	1600010M23Rik|AI605489|AW457162	cytochrome b-561 domain containing 1	protein-coding	0.005000	0.452736	6(CCTTTTAGGCAC,+,0.00)
mm_155588.1	chrX	81021087	81021287	+	1	NA	NA	NA	-49457	NM_138751	192216	Mm.490421	NM_138751	ENSMUSG00000025666	Tmem47	3010015F07Rik|AI115536|BCMP1|Tm4sf10	transmembrane protein 47	protein-coding	0.000000	0.308458	
mm_167653.1	chr9	67020553	67020753	+	1	NA	NA	NA	23218	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.000000	0.318408	
mm_112015.1	chr12	111272932	111273132	-	1	NA	NA	NA	1936	NM_033603	93835	Mm.197639	NM_033603	ENSMUSG00000021278	Amn	-	amnionless	protein-coding	0.020000	0.512438	
mm_64481.1	chr7	143065659	143065859	+	1	NA	NA	NA	-3609	NM_020285	56844	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.000000	0.492537	
mm_117208.1	chr13	64084724	64084924	-	1	NA	NA	NA	4377	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.005000	0.432836	
mm_169395.1	chr1	44480352	44480552	+	1	NA	NA	NA	-71219	NM_028450	70676	Mm.133132	NM_027506	ENSMUSG00000056870	Gulp1	3110030A04Rik|5730529O06Rik|CED-6|Ced6|GULP|Gulp-2	GULP, engulfment adaptor PTB domain containing 1	protein-coding	0.035000	0.507463	
mm_135310.1	chr16	38712911	38713111	-	1	NA	NA	NA	24	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.080000	0.641791	
mm_169079.1	chr13	33373080	33373280	+	1	NA	NA	NA	49103	NM_183197	20709	Mm.474264	NM_183197	ENSMUSG00000038327	Serpinb9f	BC052216|NK21|NK21L1|Spi13|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9f	protein-coding	0.020000	0.492537	
mm_160890.1	chr11	70133941	70134141	+	1	NA	NA	NA	3684	NM_145137	216864	Mm.222465	NM_145137	ENSMUSG00000040950	Mgl2	CD301b	macrophage galactose N-acetyl-galactosamine specific lectin 2	protein-coding	0.020000	0.552239	
mm_86177.1	chr9	119190187	119190387	-	1	NA	NA	NA	106	NM_001037749	382113	Mm.335525	NM_001037749	ENSMUSG00000070280	Slc22a14	Gm1128	solute carrier family 22 (organic cation transporter), member 14	protein-coding	0.005000	0.547264	
mm_141416.1	chr17	29430427	29430627	-	1	NA	NA	NA	-60518	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.040000	0.542289	
mm_43537.1	chr5	137350038	137350238	+	1	NA	NA	NA	29	NM_010144	13846	Mm.34533	NM_010144	ENSMUSG00000029710	Ephb4	AI042935|Htk|MDK2|Myk1|Tyro11	Eph receptor B4	protein-coding	0.080000	0.666667	
mm_86051.1	chr9	114563176	114563376	-	1	NA	NA	NA	1093	NM_001042503	636931	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	0.090000	0.606965	
mm_125461.1	chr15	52712282	52712482	+	1	NA	NA	NA	-63	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.095000	0.606965	
mm_92242.1	chr10	70195345	70195545	-	1	NA	NA	NA	-9219	NM_001304739	69563	Mm.64672	NM_001304739	ENSMUSG00000019933	Mrln	2310015B20Rik|Mln	myoregulin	protein-coding	0.030000	0.517413	
mm_152441.1	chr19	10740635	10740835	-	1	NA	NA	NA	-212	NR_027805	403202	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0.020000	0.577114	
mm_43411.1	chr5	135935005	135935205	+	1	NA	NA	NA	-464	NM_018871	22628	Mm.233813	NM_018871	ENSMUSG00000051391	Ywhag	14-3-3gamma|D7Bwg1348e	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	protein-coding	0.050000	0.616915	
mm_116773.1	chr13	52978064	52978264	-	1	NA	NA	NA	2875	NM_017373	18030	Mm.136604	NM_017373	ENSMUSG00000056749	Nfil3	AV225605|E4BP4	nuclear factor, interleukin 3, regulated	protein-coding	0.015000	0.412935	
mm_14878.1	chr2	148820005	148820205	+	1	NA	NA	NA	6	NM_027024	69294	Mm.46167	NM_027024	ENSMUSG00000036924	Cst13	1700006C19Rik|Cymg1|Mtcg1	cystatin 13	protein-coding	0.000000	0.537313	
mm_93987.1	chr10	127520680	127520880	-	1	NA	NA	NA	1664	NM_001252316	108037	Mm.29890	NM_028230	ENSMUSG00000025403	Shmt2	2700043D08Rik|AA408223|AA986903	serine hydroxymethyltransferase 2 (mitochondrial)	protein-coding	0.040000	0.527363	
mm_120740.1	chr14	73173731	73173931	+	1	NA	NA	NA	31046	NR_033185	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.045000	0.606965	
mm_107263.1	chr12	29002771	29002971	+	1	NA	NA	NA	251043	NM_201357	380752	Mm.273724	NM_201357	ENSMUSG00000036613	Tssc1	D12Ertd604e|Eipr1	tumor suppressing subtransferable candidate 1	protein-coding	0.015000	0.363184	
mm_72172.1	chr8	72295816	72296016	+	1	NA	NA	NA	-23146	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.035000	0.606965	-37(CAGTATATAAAG,-,0.00)
mm_13364.1	chr2	103454207	103454407	+	1	NA	NA	NA	30239	NM_010125	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.000000	0.363184	-89(TTGCTTATAAGG,-,0.00),-87(GCTTATAAGGAC,+,0.00)
mm_17529.1	chr2	29621095	29621295	-	1	NA	NA	NA	1475	NM_001039086	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.015000	0.507463	
mm_69396.1	chr7	132154631	132154831	-	1	NA	NA	NA	10	NM_018867	55987	Mm.471654	NM_018867	ENSMUSG00000030862	Cpxm2	4632435C11Rik|CPX-2|Cpx2	carboxypeptidase X 2 (M14 family)	protein-coding	0.115000	0.771144	
mm_160348.1	chr8	21064991	21065191	+	1	NA	NA	NA	25	NM_010039	13238	Mm.426634	NM_010039		Defa4	Crp4|Defa28|Defcr4	defensin, alpha, 4	protein-coding	0.000000	0.532338	
mm_150597.1	chr19	40730966	40731166	+	1	NA	NA	NA	71296	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.035000	0.422886	
mm_6516.1	chr1	74394833	74395033	-	1	NA	NA	NA	623	NR_029743	387219		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.060000	0.582090	
mm_44039.1	chr5	147513647	147513847	+	1	NA	NA	NA	83167	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.000000	0.273632	
mm_20586.1	chr2	131159894	131160094	-	1	NA	NA	NA	26	NM_026091	67326	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	0.105000	0.686567	
mm_31935.1	chr4	86575607	86575807	+	1	NA	NA	NA	34	NM_178376	68441	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	0.115000	0.681592	
mm_112650.1	chr13	16018073	16018273	+	1	NA	NA	NA	6322	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.462687	
mm_99612.1	chr11	104582787	104582987	+	1	NA	NA	NA	-20689	NR_130177	100415912	Mm.446786	NR_130177		Gm11665	Gm11664|OTTMUSG00000003182|OTTMUSG00000003183	predicted gene 11665	ncRNA	0.015000	0.422886	
mm_84077.1	chr9	58201903	58202103	-	1	NA	NA	NA	-204	NM_001161540	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.090000	0.547264	
mm_65624.1	chr7	27541642	27541842	-	1	NA	NA	NA	11476	NM_011116	18807	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.035000	0.592040	
mm_98962.1	chr11	98646664	98646864	+	1	NA	NA	NA	5	NM_029727	76758	Mm.159149	NM_029727	ENSMUSG00000017211	Gsdma2	2200001G21Rik|2210006M16Rik|2210009F20Rik|2210411P14Rik|Gsdm2|Gsdml2	gasdermin A2	protein-coding	0.005000	0.512438	-16(GTCCTGATAAGG,-,0.00),16(CCCTATAGACAG,+,0.00)
mm_160048.1	chr6	147091102	147091302	+	1	NA	NA	NA	127	NM_001081237	232539	Mm.491206	NM_001081237	ENSMUSG00000040102	Klhl42	A330079N23Rik|AI450355|C230080I20Rik|Ctb9|Klhdc5|mKIAA1340	kelch-like 42	protein-coding	0.075000	0.577114	
mm_120851.1	chr14	75219179	75219379	+	1	NA	NA	NA	-23008	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.000000	0.363184	
mm_33447.1	chr4	130663283	130663483	+	1	NA	NA	NA	24	NM_001159605	80912	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0.130000	0.716418	
mm_129426.1	chr15	78468533	78468733	-	1	NA	NA	NA	1	NM_027902	71753	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	0.015000	0.636816	
mm_123287.1	chr14	61439933	61440133	-	1	NA	NA	NA	-86	NM_008466	16648	Mm.25548	NM_008466	ENSMUSG00000021929	Kpna3	IPOA4	karyopherin (importin) alpha 3	protein-coding	0.100000	0.686567	
mm_13007.1	chr2	90904968	90905168	+	1	NA	NA	NA	282	NM_025991	67136	Mm.330394	NM_025991	ENSMUSG00000005505	Kbtbd4	2510026C23Rik	kelch repeat and BTB (POZ) domain containing 4	protein-coding	0.050000	0.577114	
mm_63060.1	chr7	122067259	122067459	+	1	NA	NA	NA	161	NM_138589	28018	Mm.282122	NM_138589	ENSMUSG00000030870	Ubfd1	AI467302|D7Wsu105e|D7Wsu128e|Ubph	ubiquitin family domain containing 1	protein-coding	0.080000	0.666667	
mm_88712.1	chr10	80152330	80152530	+	1	NA	NA	NA	2748	NM_001305799	59090	Mm.143813	NM_021565	ENSMUSG00000035621	Midn	3000003C15Rik	midnolin	protein-coding	0.015000	0.587065	
mm_43771.1	chr5	141241433	141241633	+	1	NA	NA	NA	-1	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	0.185000	0.810945	
mm_149275.1	chr19	10605485	10605685	+	1	NA	NA	NA	-40	NM_015735	13194	Mm.289915	NM_015735	ENSMUSG00000024740	Ddb1	127kDa|AA408517|p127-Ddb1	damage specific DNA binding protein 1	protein-coding	0.090000	0.676617	
mm_49070.1	chr6	5725735	5725935	+	1	NA	NA	NA	196	NM_001191026	13426	Mm.20893	NM_010063	ENSMUSG00000029757	Dync1i1	DH IC-1|DHIC-1|DIC|Dncic1|IC74	dynein cytoplasmic 1 intermediate chain 1	protein-coding	0.095000	0.691542	
mm_112189.1	chr12	113422603	113422803	-	1	NA	NA	NA	-66862	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.015000	0.557214	
mm_47521.1	chr5	124111727	124111927	-	1	NA	NA	NA	-473	NM_001347478	66627	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	0.055000	0.592040	
mm_60627.1	chr7	44748518	44748718	+	1	NA	NA	NA	-1	NM_178734	243963	Mm.382935	NM_178734	ENSMUSG00000048012	Zfp473	D030014N22Rik|Znf473|zfp-100	zinc finger protein 473	protein-coding	0.095000	0.646766	
mm_42857.1	chr5	122210262	122210462	+	1	NA	NA	NA	75	NM_028752	74096	Mm.28804	NM_028752	ENSMUSG00000064267	Hvcn1	0610039P13Rik|AI450555|BTS|HV1|Vsop.|mVSOP	hydrogen voltage-gated channel 1	protein-coding	0.000000	0.577114	
mm_107943.1	chr12	71889633	71889833	+	1	NA	NA	NA	190	NM_001286452	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.025000	0.562189	
mm_21055.1	chr2	152654156	152654356	-	1	NA	NA	NA	-15205	NM_010376	14950	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	0.000000	0.502488	
mm_67604.1	chr7	83745720	83745920	-	1	NA	NA	NA	-10330	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.045000	0.492537	
mm_106879.1	chr12	8011464	8011664	+	1	NA	NA	NA	33887	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.388060	
mm_116743.1	chr13	51767466	51767666	-	1	NA	NA	NA	26181	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.020000	0.532338	-22(CACTCTTAAAAG,-,0.00),-20(CTCTTAAAAGTC,+,0.00)
mm_100172.1	chr11	116532360	116532560	+	1	NA	NA	NA	16	NM_001172473	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.045000	0.616915	
mm_19903.1	chr2	114147000	114147200	-	1	NA	NA	NA	3470	NR_105968	102465982		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	0.025000	0.477612	
mm_45001.1	chr5	38230592	38230792	-	1	NA	NA	NA	10210	NM_025281	17089	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	0.030000	0.477612	
mm_40510.1	chr5	57767551	57767751	+	1	NA	NA	NA	49570	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.010000	0.388060	25(CCTTTTATAAGA,+,0.00)
mm_157543.1	chrX	51205789	51205989	-	1	NA	NA	NA	101	NM_001310515	171170	Mm.295324	NM_134163	ENSMUSG00000036109	Mbnl3	A530038J18Rik|AI661274|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL	muscleblind-like 3 (Drosophila)	protein-coding	0.150000	0.696517	
mm_63667.1	chr7	129662820	129663020	+	1	NA	NA	NA	71057	NM_172255	207425	Mm.229323	NM_172255	ENSMUSG00000042055	Wdr11	2900055P10Rik|AW489876|Brwd2|mKIAA1351	WD repeat domain 11	protein-coding	0.005000	0.437811	
mm_59770.1	chr7	28833971	28834171	+	1	NA	NA	NA	-99	NM_010707	16857	Mm.210336	NM_010707		Lgals6	galectin-6	lectin, galactose binding, soluble 6	protein-coding	0.000000	0.567164	-78(GGCCCTAAGAGG,-,0.00)
mm_53640.1	chr6	140622550	140622750	+	1	NA	NA	NA	-13	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.020000	0.537313	
mm_95634.1	chr11	53706699	53706899	+	1	NA	NA	NA	520	NM_009012	19360	Mm.4888	NM_009012	ENSMUSG00000020380	Rad50	Mrell|Rad50l	RAD50 double strand break repair protein	protein-coding	0.110000	0.711443	
mm_50701.1	chr6	52102846	52103046	+	1	NA	NA	NA	-3	NR_110440	102635415	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|OTTMUSG00000018881|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA	0.025000	0.522388	
mm_87057.1	chr10	28837692	28837892	+	1	NA	NA	NA	85715	NR_033601	114676	Mm.390292	NR_033601		4930519F09Rik	-	pyruvate dehydrogenase E1 alpha 1 pseudogene	pseudo	0.000000	0.368159	70(CCTCTTAAACAC,+,0.00)
mm_163042.1	chr11	54568095	54568295	+	1	NA	NA	NA	-27951	NM_001252498	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.005000	0.373134	81(GCCTTTTAAGAC,-,0.00),82(CCTTTTAAGACT,+,0.00)
mm_44698.1	chr5	30461826	30462026	-	1	NA	NA	NA	6	NM_001286421	83762	Mm.244502	NM_031875	ENSMUSG00000062372	Otof	-	otoferlin	protein-coding	0.045000	0.641791	
mm_48009.1	chr5	136164950	136165150	-	1	NA	NA	NA	5606	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.005000	0.472637	
mm_121117.1	chr14	101840267	101840467	+	1	NA	NA	NA	-256	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.020000	0.492537	
mm_96034.1	chr11	59556149	59556349	+	1	NA	NA	NA	13563	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.030000	0.378109	
mm_119740.1	chr14	54122023	54122223	+	1	NA	NA	NA	131806	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.522388	
mm_78445.1	chr9	32224155	32224355	+	1	NA	NA	NA	6	NM_177379	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.010000	0.562189	
mm_77514.1	chr8	122893972	122894172	-	1	NA	NA	NA	45698	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.025000	0.542289	
mm_108006.1	chr12	73584550	73584750	+	1	NA	NA	NA	-146	NM_001313977	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.115000	0.736318	
mm_119247.1	chr14	33923260	33923460	+	1	NA	NA	NA	-227	NM_145741	14560	Mm.432071	NM_145741	ENSMUSG00000021943	Gdf10	Bmp3b	growth differentiation factor 10	protein-coding	0.130000	0.791045	
mm_49977.1	chr6	40891255	40891455	+	1	NA	NA	NA	-3861	NM_139296	194357	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0.000000	0.512438	84(CCTTTAAGACAG,+,0.00)
mm_103546.1	chr11	77607518	77607718	-	1	NA	NA	NA	197	NM_144825	216965	Mm.340436	NM_144825	ENSMUSG00000017291	Taok1	2810468K05Rik|AU020252|D130018F14Rik|Map3k16|Markk|Psk2|mKIAA1361	TAO kinase 1	protein-coding	0.125000	0.786070	
mm_42976.1	chr5	123167281	123167481	+	1	NA	NA	NA	15305	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.010000	0.333333	
mm_86036.1	chr9	114026638	114026838	-	1	NA	NA	NA	13	NM_178624	72179	Mm.386808	NM_178624	ENSMUSG00000032507	Fbxl2	2810423A21Rik|Fbl3	F-box and leucine-rich repeat protein 2	protein-coding	0.125000	0.736318	
mm_128092.1	chr15	27788419	27788619	-	1	NA	NA	NA	-106977	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.010000	0.527363	
mm_146659.1	chr18	11967047	11967247	-	1	NA	NA	NA	-126709	NR_035447	100316686		NR_035447	ENSMUSG00000084565	Mir1901	Mirn1901|mmu-mir-1901	microRNA 1901	ncRNA	0.000000	0.522388	-26(GGCCTTTTAAAG,-,0.00),-25(GCCTTTTAAAGG,-,0.00),-24(CCTTTTAAAGGG,+,0.00),-24(CCTTTTAAAGGG,-,0.00),-23(CTTTTAAAGGGA,+,0.00),-5(TCTTTTAGGGGC,+,0.00)
mm_40960.1	chr5	76951656	76951856	+	1	NA	NA	NA	-178	NM_172146	231327	Mm.202337	NM_172146	ENSMUSG00000029246	Ppat	5730454C12Rik|AA408689|AA675351|AI507113|C79945	phosphoribosyl pyrophosphate amidotransferase	protein-coding	0.070000	0.592040	
mm_69878.1	chr7	141636518	141636718	-	1	NA	NA	NA	15917	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.020000	0.532338	
mm_120256.1	chr14	63011670	63011870	+	1	NA	NA	NA	-1	NM_001039121	654458	Mm.390737	NM_001039121	ENSMUSG00000075572	Defb43	BD-43|EG654458|mBD-43	defensin beta 43	protein-coding	0.005000	0.512438	
mm_112217.1	chr12	113428793	113428993	-	1	NA	NA	NA	-60672	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.492537	
mm_22303.1	chr2	180380967	180381167	-	1	NA	NA	NA	-4537	NR_045331	622283	Mm.447602	NR_045331		Mir1a-1hg	EG622283|Gm6307	Mir1a-1 and Mir133a-2 host gene	ncRNA	0.015000	0.542289	
mm_154830.1	chrX	18162530	18162730	+	1	NA	NA	NA	55	NM_001310444	22289	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	0.090000	0.646766	
mm_2594.1	chr1	119523644	119523844	+	1	NA	NA	NA	-2410	NM_146103	226351	Mm.439806	NM_146103	ENSMUSG00000098923	Tmem185b	2500001K11Rik	transmembrane protein 185B	protein-coding	0.010000	0.507463	
mm_59823.1	chr7	29245645	29245845	+	1	NA	NA	NA	2722	NM_028179	72275	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0.020000	0.597015	
mm_25032.1	chr3	98160531	98160731	+	1	NA	NA	NA	-3	NM_027665	71078	Mm.50711	NM_027665	ENSMUSG00000043468	Adam30	4933424D07Rik|svph4	a disintegrin and metallopeptidase domain 30	protein-coding	0.060000	0.587065	
mm_104071.1	chr11	86586348	86586548	-	1	NA	NA	NA	-2290	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.035000	0.557214	
mm_104370.1	chr11	94358751	94358951	-	1	NA	NA	NA	30850	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.050000	0.562189	
mm_31022.1	chr4	40728876	40729076	+	1	NA	NA	NA	6046	NM_001164672	15502	Mm.27897	NM_008298	ENSMUSG00000028410	Dnaja1	HSJ-2|Hsj2|Nedd7	DnaJ heat shock protein family (Hsp40) member A1	protein-coding	0.005000	0.457711	
mm_85325.1	chr9	101862354	101862554	-	1	NA	NA	NA	442521	NR_106163	102466241		NR_106163	ENSMUSG00000098521	Mir7243	Gm27363|mmu-mir-7243	microRNA 7243	ncRNA	0.010000	0.507463	
mm_78611.1	chr9	37545045	37545245	+	1	NA	NA	NA	5890	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.045000	0.601990	
mm_17290.1	chr2	26204531	26204731	-	1	NA	NA	NA	1944	NM_001039653	16871	Mm.386765	NM_010711	ENSMUSG00000026934	Lhx3	Lim3|P-LIM|mLIM3|mLim-3	LIM homeobox protein 3	protein-coding	0.010000	0.447761	
mm_50910.1	chr6	57582610	57582810	+	1	NA	NA	NA	1718	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.005000	0.417910	-47(GTCCATAAAAAC,-,0.00)
mm_89966.1	chr10	111473131	111473331	+	1	NA	NA	NA	39	NM_015781	53605	Mm.290407	NM_015781	ENSMUSG00000058799	Nap1l1	AA407126|AI256722|D10Ertd68e|NAP-1	nucleosome assembly protein 1-like 1	protein-coding	0.145000	0.716418	
mm_44861.1	chr5	34288287	34288487	-	1	NA	NA	NA	-63	NM_001015039	231125	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.175000	0.781095	
mm_75917.1	chr8	71463622	71463822	-	1	NA	NA	NA	-65	NM_022419	64296	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	0.070000	0.656716	
mm_144354.1	chr18	15346256	15346456	+	1	NA	NA	NA	56643	NM_001308647	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.020000	0.492537	-65(CCCTTTAAACTG,+,0.00)
mm_62639.1	chr7	107664818	107665018	+	1	NA	NA	NA	58074	NM_001163557	19024	Mm.2817	NM_008905	ENSMUSG00000036528	Ppfibp2	Cclp1	PTPRF interacting protein, binding protein 2 (liprin beta 2)	protein-coding	0.005000	0.577114	
mm_139046.1	chr17	46248097	46248297	+	1	NA	NA	NA	117	NM_145353	28064	Mm.248769	NM_145353	ENSMUSG00000071074	Yipf3	C6orf109|D17Wsu94e|KLIP1	Yip1 domain family, member 3	protein-coding	0.135000	0.731343	
mm_73476.1	chr8	106893556	106893756	+	1	NA	NA	NA	16	NM_011574	21771	Mm.10665	NM_011574	ENSMUSG00000041438	Cirh1a	Cirhin|Naic|Teg-292|Tex292|Utp4	cirrhosis, autosomal recessive 1A (human)	protein-coding	0.155000	0.721393	
mm_147379.1	chr18	43687627	43687827	-	1	NA	NA	NA	46	NM_001163637	76217	Mm.134602	NM_001163637	ENSMUSG00000024502	Jakmip2	6430702L21Rik|AI850334|D930046L20Rik	janus kinase and microtubule interacting protein 2	protein-coding	0.020000	0.626866	
mm_118748.1	chr14	22330828	22331028	+	1	NA	NA	NA	211870	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.000000	0.472637	
mm_16599.1	chr2	5001476	5001676	-	1	NA	NA	NA	10768	NM_001305259	70024	Mm.23828	NM_027290	ENSMUSG00000026669	Mcm10	2410041F14Rik|AU018508|C330019M07Rik|C79164	minichromosome maintenance 10 replication initiation factor	protein-coding	0.010000	0.512438	
mm_20493.1	chr2	130279299	130279499	-	1	NA	NA	NA	1373	NR_028528	100217428		NR_028528	ENSMUSG00000065272	Snord57	MBII-434	small nucleolar RNA, C/D box 57	snoRNA	0.010000	0.412935	
mm_119711.1	chr14	53862973	53863173	+	1	NA	NA	NA	390856	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.417910	
mm_128494.1	chr15	51896916	51897116	-	1	NA	NA	NA	19575	NM_030132	78581	Mm.176347	NM_030132	ENSMUSG00000022313	Utp23	1700010I21Rik|AI662478|BB238373|D530033C11Rik	UTP23 small subunit processome component	protein-coding	0.010000	0.437811	
mm_7478.1	chr1	120504776	120504976	-	1	NA	NA	NA	208	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.010000	0.482587	
mm_149544.1	chr19	12574300	12574500	+	1	NA	NA	NA	875	NM_026640	107373	Mm.1643	NM_026640	ENSMUSG00000024691	Fam111a	4632417K18Rik|AW413625	family with sequence similarity 111, member A	protein-coding	0.010000	0.512438	-32(GCTTAAAGGGGC,+,0.00)
mm_93112.1	chr10	91121870	91122070	-	1	NA	NA	NA	1993	NM_133668	18674	Mm.298	NM_133668	ENSMUSG00000061904	Slc25a3	5730556H19Rik|PTP|Phc	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 3	protein-coding	0.010000	0.417910	
mm_12114.1	chr2	61593645	61593845	+	1	NA	NA	NA	648	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.020000	0.502488	
mm_115513.1	chr13	5604083	5604283	-	1	NA	NA	NA	253909	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.010000	0.388060	
mm_7227.1	chr1	93342806	93343006	-	1	NA	NA	NA	-118	NM_080850	269224	Mm.379454	NM_080850	ENSMUSG00000026274	Pask	mKIAA0135	PAS domain containing serine/threonine kinase	protein-coding	0.060000	0.597015	
mm_106207.1	chr11	116851092	116851292	-	1	NA	NA	NA	1902	NM_011358	20382	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0.005000	0.363184	73(GGCCTTTAAAAA,-,0.00),74(GCCTTTAAAAAA,-,0.00)
mm_95664.1	chr11	53771979	53772179	+	1	NA	NA	NA	1606	NM_001159396	16362	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.000000	0.537313	
mm_117822.1	chr13	98016110	98016310	-	1	NA	NA	NA	189955	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0.035000	0.557214	
mm_90842.1	chr10	8725007	8725207	-	1	NA	NA	NA	160963	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.045000	0.527363	
mm_118730.1	chr14	22246757	22246957	+	1	NA	NA	NA	227145	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.000000	0.417910	
mm_113881.1	chr13	48968917	48969117	+	1	NA	NA	NA	905	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.020000	0.407960	-89(CTTTTTCTAGAC,+,0.00),66(TTCTTTTAAAGA,-,0.00),67(TCTTTTAAAGAC,+,0.00)
mm_37455.1	chr4	123415650	123415850	-	1	NA	NA	NA	-3839	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.000000	0.343284	
mm_74813.1	chr8	22693971	22694171	-	1	NA	NA	NA	12512	NM_010546	16150	Mm.277886	NM_010546	ENSMUSG00000031537	Ikbkb	AI132552|IKK-2|IKK-beta|IKK2|IKK[b]|IKKbeta	inhibitor of kappaB kinase beta	protein-coding	0.020000	0.472637	
mm_22461.1	chr3	3507913	3508113	+	1	NA	NA	NA	-17	NM_013920	30942	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.055000	0.502488	
mm_143479.1	chr17	71257151	71257351	-	1	NA	NA	NA	52597	NM_001164885	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.010000	0.512438	
mm_90085.1	chr10	116914009	116914209	+	1	NA	NA	NA	-17230	NM_001033333	237558	Mm.336386	NM_001033333	ENSMUSG00000034057	Myrfl	Gm239	myelin regulatory factor-like	protein-coding	0.045000	0.552239	
mm_58438.1	chr7	3297828	3298028	+	1	NA	NA	NA	4900	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.010000	0.447761	
mm_35693.1	chr4	44126585	44126785	-	1	NA	NA	NA	4792	NR_040414	623796	Mm.490409	NR_040414	ENSMUSG00000084274	Gm12504	OTTMUSG00000007209	prothymosin alpha pseudogene	pseudo	0.015000	0.373134	
mm_54434.1	chr6	34176931	34177131	-	1	NA	NA	NA	23	NM_021435	58246	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0.070000	0.592040	
mm_75176.1	chr8	36827957	36828157	-	1	NA	NA	NA	-95003	NM_001194941	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.000000	0.288557	-3(GGCTATAAAAAT,-,0.00)
mm_106007.1	chr11	115812083	115812283	-	1	NA	NA	NA	1409	NM_080643	140721	Mm.383737	NM_080643	ENSMUSG00000034471	Caskin2	1600028L06Rik|mKIAA1139	CASK-interacting protein 2	protein-coding	0.015000	0.611940	
mm_153616.1	chr19	43986254	43986454	-	1	NA	NA	NA	166	NM_030703	93721	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	0.030000	0.601990	
mm_87105.1	chr10	33195852	33196052	+	1	NA	NA	NA	60405	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.000000	0.328358	-79(CCTTTTAAAATG,+,0.00)
mm_79683.1	chr9	59941985	59942185	+	1	NA	NA	NA	7994	NM_013708	23958	Mm.103641	NM_013708	ENSMUSG00000032292	Nr2e3	A930035N01Rik|PNR|RNR|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding	0.035000	0.487562	
mm_153745.1	chr19	44750662	44750862	-	1	NA	NA	NA	-6632	NM_011037	18504	Mm.192158	NM_011037	ENSMUSG00000004231	Pax2	Opdc|Pax-2	paired box 2	protein-coding	0.040000	0.616915	
mm_78900.1	chr9	44673137	44673337	+	1	NA	NA	NA	4	NM_021481	58866	Mm.45380	NM_021481	ENSMUSG00000032098	Treh	2210412M19Rik	trehalase (brush-border membrane glycoprotein)	protein-coding	0.015000	0.626866	
mm_119627.1	chr14	51145295	51145495	+	1	NA	NA	NA	1372	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.010000	0.487562	
mm_6989.1	chr1	86357271	86357471	-	1	NA	NA	NA	-1044	NR_002851	80828		NR_002851	ENSMUSG00000064823	Snord82	Rnu82|U82|Z25	small nucleolar RNA, C/D box 82	snoRNA	0.000000	0.452736	
mm_75612.1	chr8	62123093	62123293	-	1	NA	NA	NA	0	NM_001136089	26359	Mm.42179	NM_011922	ENSMUSG00000031635	Anxa10	-	annexin A10	protein-coding	0.000000	0.373134	
mm_72892.1	chr8	90493028	90493228	+	1	NA	NA	NA	-144876	NM_172913	244579	Mm.302755	NM_172913	ENSMUSG00000043668	Tox3	500-9|BC052044|C230068E13|CAGF9|Tnrc9	TOX high mobility group box family member 3	protein-coding	0.005000	0.487562	
mm_75588.1	chr8	61591039	61591239	-	1	NA	NA	NA	30	NM_001293774	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.065000	0.631841	
mm_31577.1	chr4	57689418	57689618	+	1	NA	NA	NA	121270	NM_172868	242481	Mm.331630	NM_172868	ENSMUSG00000090053	Palm2	53-H12|B130066I24|R75368|pEN70	paralemmin 2	protein-coding	0.020000	0.572139	
mm_69080.1	chr7	127011773	127011973	-	1	NA	NA	NA	2721	NM_080638	78388	Mm.228797	NM_080638	ENSMUSG00000030681	Mvp	2310009M24Rik|LRP|VAULT1	major vault protein	protein-coding	0.005000	0.522388	
mm_153977.1	chr19	47864411	47864611	-	1	NA	NA	NA	-1034	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.010000	0.497512	
mm_37194.1	chr4	117496849	117497049	-	1	NA	NA	NA	103	NM_025739	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.055000	0.572139	
mm_98010.1	chr11	84249305	84249505	+	1	NA	NA	NA	53967	NM_133360	107476	Mm.31374	NM_133360	ENSMUSG00000020532	Acaca	A530025K05Rik|Acac|Acc1|Gm738	acetyl-Coenzyme A carboxylase alpha	protein-coding	0.015000	0.383085	
mm_123675.1	chr14	69476535	69476735	-	1	NA	NA	NA	35914	NM_173420	239167	Mm.259889	NM_173420	ENSMUSG00000047977	Synb	D930020E02Rik|syncytin-B	syncytin b	protein-coding	0.030000	0.388060	-97(CTTTTAAAAACC,+,0.00)
mm_8235.1	chr1	138175653	138175853	-	1	NA	NA	NA	-448	NM_001268286	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.015000	0.457711	-68(GGCTCTTTAAAG,-,0.00),-67(GCTCTTTAAAGC,-,0.00),-66(CTCTTTAAAGCC,+,0.00)
mm_165194.1	chr2	32385974	32386174	-	1	NA	NA	NA	1665	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.010000	0.547264	
mm_59938.1	chr7	30424258	30424458	+	1	NA	NA	NA	1054	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.015000	0.562189	
mm_3207.1	chr1	135824952	135825152	+	1	NA	NA	NA	6454	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding	0.005000	0.338308	16(GCTTTAATAGAT,+,0.00),38(TCTTTTAAACAC,+,0.00)
mm_12617.1	chr2	74691963	74692163	+	1	NA	NA	NA	172	NM_013554	15430	Mm.24420	NM_013554	ENSMUSG00000050368	Hoxd10	AI385591|AI874987|Hox-4.5|Hox-5.3	homeobox D10	protein-coding	0.020000	0.487562	
mm_90259.1	chr10	122449291	122449491	+	1	NA	NA	NA	892	NM_016847	54140	Mm.4351	NM_016847	ENSMUSG00000020123	Avpr1a	AVPR|Avpr1|V1a|V1aR	arginine vasopressin receptor 1A	protein-coding	0.075000	0.582090	
mm_131396.1	chr16	14317425	14317625	+	1	NA	NA	NA	-193	NM_025345	66086	Mm.42072	NM_025345	ENSMUSG00000022677	Fopnl	0610037P05Rik	Fgfr1op N-terminal like	protein-coding	0.050000	0.587065	
mm_88683.1	chr10	80053936	80054136	+	1	NA	NA	NA	17	NM_001037741	625249	Mm.332810	NM_008162	ENSMUSG00000075706	Gpx4	GPx-4|GSHPx-4|PHGPx|mtPHGPx|snGPx	glutathione peroxidase 4	protein-coding	0.150000	0.761194	
mm_2356.1	chr1	92935522	92935722	+	1	NA	NA	NA	1214	NM_011796	23830	Mm.294315	NM_011796	ENSMUSG00000026270	Capn10	AW049679|Capn8|mKIAA1845	calpain 10	protein-coding	0.005000	0.388060	8(CAGCTTAAATGG,-,0.00)
mm_39834.1	chr5	30853728	30853928	+	1	NA	NA	NA	-7979	NM_001310516	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.010000	0.562189	19(CCCCAGAAAAGC,-,0.00)
mm_104437.1	chr11	94971952	94972152	-	1	NA	NA	NA	4275	NM_009161	20391	Mm.18709	NM_009161	ENSMUSG00000001508	Sgca	50DAG|Asg	sarcoglycan, alpha (dystrophin-associated glycoprotein)	protein-coding	0.025000	0.502488	
mm_52980.1	chr6	123262478	123262678	+	1	NA	NA	NA	471	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.010000	0.462687	
mm_144505.1	chr18	24606527	24606727	+	1	NA	NA	NA	2666	NM_021448	58523	Mm.25298	NM_021448	ENSMUSG00000024271	Elp2	AU023723|Epl2|StIP1|Statip1	elongator acetyltransferase complex subunit 2	protein-coding	0.010000	0.487562	
mm_131160.1	chr16	6948615	6948815	+	1	NA	NA	NA	-121120	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.010000	0.427861	
mm_43396.1	chr5	135778582	135778782	+	1	NA	NA	NA	33	NM_008617	17448	Mm.297096	NM_008617	ENSMUSG00000019179	Mdh2	MDH|Mdh-2|Mor-1|Mor1	malate dehydrogenase 2, NAD (mitochondrial)	protein-coding	0.105000	0.661692	
mm_48996.1	chr6	4756528	4756728	+	1	NA	NA	NA	9322	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.025000	0.497512	
mm_132011.1	chr16	25862248	25862448	+	1	NA	NA	NA	60432	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.030000	0.542289	
mm_110827.1	chr12	72628778	72628978	-	1	NA	NA	NA	35950	NM_025522	66375	Mm.289653	NM_025522	ENSMUSG00000021094	Dhrs7	2310016E22Rik|5730564L20Rik|AW061210|Retdsr4|Retsdr4	dehydrogenase/reductase (SDR family) member 7	protein-coding	0.030000	0.587065	
mm_1860.1	chr1	84882052	84882252	+	1	NA	NA	NA	42311	NM_025386	66153	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.010000	0.412935	
mm_99735.1	chr11	106374641	106374841	+	1	NA	NA	NA	-85	NM_029345	75573	Mm.159539	NM_029345	ENSMUSG00000009210	Prr29	2310007L24Rik	proline rich 29	protein-coding	0.025000	0.611940	
mm_7992.1	chr1	134235332	134235532	-	1	NA	NA	NA	25	NM_001291930	11539	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|BB176431|Ri	adenosine A1 receptor	protein-coding	0.110000	0.756219	
mm_67642.1	chr7	84439106	84439306	-	1	NA	NA	NA	-29168	NM_007488	11864	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding	0.005000	0.477612	
mm_19198.1	chr2	84469403	84469603	-	1	NA	NA	NA	4671	NM_011576	21788	Mm.124316	NM_011576	ENSMUSG00000027082	Tfpi	A630013F22Rik|AW552122|EPI|LACI	tissue factor pathway inhibitor	protein-coding	0.010000	0.398010	
mm_121232.1	chr14	103055726	103055926	+	1	NA	NA	NA	8814	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.005000	0.462687	
mm_68923.1	chr7	126471367	126471567	-	1	NA	NA	NA	1627	NR_110346	20399	Mm.8538	NM_011363	ENSMUSG00000030733	Sh2b1	AI425885|C530001K22Rik|Irip|Psm|SH2-B|SH2-Bb|Sh2bpsm1|mKIAA1299	SH2B adaptor protein 1	protein-coding	0.010000	0.552239	
mm_111827.1	chr12	107131381	107131581	-	1	NA	NA	NA	-415157	NR_015512	71033	Mm.159404	NR_015512	ENSMUSG00000085820	4933406K04Rik	4930426M03Rik|4930485I22Rik|4933427G14Rik	RIKEN cDNA 4933406K04 gene	ncRNA	0.020000	0.512438	
mm_21135.1	chr2	154211428	154211628	-	1	NA	NA	NA	11148	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.005000	0.517413	
mm_37660.1	chr4	129057873	129058073	-	1	NA	NA	NA	-298	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.080000	0.661692	
mm_44257.1	chr5	5478992	5479192	-	1	NA	NA	NA	51	NM_001200025	381716	Mm.276086	NM_001200025	ENSMUSG00000079666	1700015F17Rik	Gm1686	RIKEN cDNA 1700015F17 gene	protein-coding	0.015000	0.542289	
mm_57480.1	chr6	125236884	125237084	-	1	NA	NA	NA	43	NM_001033126	21940	Mm.367714	NM_001033126	ENSMUSG00000030336	Cd27	S152|Tnfrsf7|Tp55	CD27 antigen	protein-coding	0.020000	0.552239	
mm_58769.1	chr7	15886069	15886269	+	1	NA	NA	NA	3552	NR_038092	546024	Mm.259041	NM_001033638	ENSMUSG00000074365	Crxos	AA606869|AY590891|Crxos1|Egam1	cone-rod homeobox, opposite strand	protein-coding	0.005000	0.427861	
mm_146294.1	chr18	80046779	80046979	+	1	NA	NA	NA	-16	NM_053117	93737	Mm.24678	NM_053117	ENSMUSG00000056214	Pard6g	2410049N21Rik|Par6a	par-6 family cell polarity regulator gamma	protein-coding	0.155000	0.840796	
mm_126304.1	chr15	79516398	79516598	+	1	NA	NA	NA	90	NM_134090	105785	Mm.298199	NM_134090	ENSMUSG00000010830	Kdelr3	AI173274	KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 3	protein-coding	0.135000	0.726368	
mm_116240.1	chr13	33905599	33905799	-	1	NA	NA	NA	9	NM_148942	97848	Mm.272188	NM_148942	ENSMUSG00000052180	Serpinb6c	C76171|C76174|SPI3C|SPIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6c	protein-coding	0.010000	0.572139	
mm_8130.1	chr1	136230288	136230488	-	1	NA	NA	NA	3892	NM_028872	67313	Mm.36763	NM_028872	ENSMUSG00000041605	5730559C18Rik	1700034M08Rik|4933426C09Rik|AI586180|D1Mgi54	RIKEN cDNA 5730559C18 gene	protein-coding	0.035000	0.631841	
mm_16672.1	chr2	6722156	6722356	-	1	NA	NA	NA	-594	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.015000	0.522388	-74(TGCTTTTTAAAG,-,0.00),-73(GCTTTTTAAAGG,-,0.00),-72(CTTTTTAAAGGG,+,0.00),-72(CTTTTTAAAGGG,-,0.00)
mm_16002.1	chr2	167358796	167358996	+	1	NA	NA	NA	-9718	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.030000	0.552239	
mm_37401.1	chr4	121196390	121196590	-	1	NA	NA	NA	18594	NM_001346660	109263	Mm.215745	NM_001081013	ENSMUSG00000049878	Rlf	9230110M18Rik|AI195322|MommeD8	rearranged L-myc fusion sequence	protein-coding	0.010000	0.412935	-60(GTGCCTAAATGG,-,0.00)
mm_102165.1	chr11	53818636	53818836	-	1	NA	NA	NA	40520	NR_033332	622459	Mm.479656	NR_033332	ENSMUSG00000081769	Gm12216	602-19-115|OTTMUSG00000005650	predicted gene 12216	ncRNA	0.015000	0.388060	
mm_21866.1	chr2	165898928	165899128	-	1	NA	NA	NA	-14190	NM_001252587	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.020000	0.597015	
mm_158461.1	chrX	140599610	140599810	-	1	NA	NA	NA	812	NM_001077364	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.135000	0.671642	-34(CGGTTTAAAGGG,-,0.00)
mm_150905.1	chr19	45749520	45749720	+	1	NA	NA	NA	-57	NM_008723	18150	Mm.1406	NM_008723	ENSMUSG00000056209	Npm3	Nub1	nucleoplasmin 3	protein-coding	0.105000	0.641791	-12(GCCCATTAAAGG,-,0.00),-10(CCATTAAAGGAG,+,0.00)
mm_2014.1	chr1	87127735	87127935	+	1	NA	NA	NA	2827	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.045000	0.646766	
mm_79720.1	chr9	61441716	61441916	+	1	NA	NA	NA	69450	NM_001083927	21887	Mm.24255	NM_009389	ENSMUSG00000032280	Tle3	2610103N05Rik|ESG|Grg3a|Grg3b|mKIAA1547	transducin-like enhancer of split 3	protein-coding	0.010000	0.472637	
mm_84124.1	chr9	58657751	58657951	-	1	NA	NA	NA	75611	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.010000	0.492537	
mm_8225.1	chr1	138174225	138174425	-	1	NA	NA	NA	801	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.010000	0.457711	-34(GCCTTGAAAAGG,-,0.00)
mm_103004.1	chr11	69695669	69695869	-	1	NA	NA	NA	329	NM_011614	21944	Mm.8983	NM_011614	ENSMUSG00000097328	Tnfsf12	Apo3l|Dr3l|Dr3lg|Tweak	tumor necrosis factor (ligand) superfamily, member 12	protein-coding	0.080000	0.796020	
mm_169762.1	chr15	97184844	97185044	-	1	NA	NA	NA	-62163	NM_172293	239647	Mm.130036	NM_172293	ENSMUSG00000044250	Pced1b	Fam113b	PC-esterase domain containing 1B	protein-coding	0.015000	0.522388	
mm_38067.1	chr4	134093775	134093975	-	1	NA	NA	NA	1198	NM_013706	23833	Mm.24130	NM_013706	ENSMUSG00000000682	Cd52	AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7	CD52 antigen	protein-coding	0.025000	0.512438	51(CCCCCTTAAAGA,-,0.00),52(CCCCTTAAAGAG,-,0.00),54(CCTTAAAGAGTG,+,0.00)
mm_81258.1	chr9	107995665	107995865	+	1	NA	NA	NA	-6883	NM_013785	27399	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0.065000	0.621891	
mm_147969.1	chr18	67245369	67245569	-	1	NA	NA	NA	361	NM_172630	225651	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	A530095G11	metallophosphoesterase 1	protein-coding	0.125000	0.721393	
mm_169452.1	chr14	60875365	60875565	+	1	NA	NA	NA	90899	NR_040642	70478	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0.035000	0.497512	
mm_5750.1	chr1	46853333	46853533	-	1	NA	NA	NA	76	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.080000	0.671642	
mm_37753.1	chr4	129640608	129640808	-	1	NA	NA	NA	97	NM_001005506	109658	Mm.268863	NM_001005506	ENSMUSG00000053841	Txlna	2600010N21Rik|AI425952|AW209241|Il14|Txln	taxilin alpha	protein-coding	0.105000	0.701493	
mm_119793.1	chr14	54194604	54194804	+	1	NA	NA	NA	59225	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.010000	0.527363	
mm_48327.1	chr5	138995963	138996163	-	1	NA	NA	NA	-1110	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.070000	0.656716	-74(CCTTTTATGGAG,+,0.00)
mm_4724.1	chr1	181211933	181212133	+	1	NA	NA	NA	-55	NM_145514	226757	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.080000	0.666667	
mm_27199.1	chr3	35666066	35666266	-	1	NA	NA	NA	-3	NR_040748	625963	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	0.005000	0.407960	44(GTCTATTAAAAA,-,0.00)
mm_115702.1	chr13	14521640	14521840	-	1	NA	NA	NA	1486	NM_001081348	94253	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.010000	0.417910	
mm_5131.1	chr1	9685437	9685637	-	1	NA	NA	NA	14672	NM_001290397	17864	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	0.000000	0.258706	
mm_118145.1	chr13	105054709	105054909	-	1	NA	NA	NA	121	NM_029879	52882	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.075000	0.606965	
mm_90361.1	chr10	127165714	127165914	+	1	NA	NA	NA	-17	NM_027739	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.075000	0.676617	
mm_29733.1	chr3	126831337	126831537	-	1	NA	NA	NA	111949	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.010000	0.532338	
mm_81720.1	chr9	111885192	111885392	+	1	NA	NA	NA	-194944	NM_001324546	20840	Mm.1414	NM_016853	ENSMUSG00000032502	Stac	-	src homology three (SH3) and cysteine rich domain	protein-coding	0.000000	0.303483	-72(CCCTCTAAATAG,-,0.00),-70(CTCTAAATAGCC,+,0.00)
mm_3617.1	chr1	152399802	152400002	+	1	NA	NA	NA	35	NM_177756	269132	Mm.23782	NM_177756	ENSMUSG00000032649	Colgalt2	AI427652|D730024P12|Glt25d2	collagen beta(1-O)galactosyltransferase 2	protein-coding	0.055000	0.641791	
mm_28277.1	chr3	88949863	88950063	-	1	NA	NA	NA	319	NM_022994	65111	Mm.29028	NM_022994	ENSMUSG00000068921	Dap3	4921514D13Rik|DAP-3|MRP-S29|S29mt	death associated protein 3	protein-coding	0.100000	0.696517	
mm_78165.1	chr9	21028367	21028567	+	1	NA	NA	NA	-906	NM_023892	78369	Mm.30220	NM_023892	ENSMUSG00000001014	Icam4	1810015M19Rik|Cd242|ICAM-4	intercellular adhesion molecule 4, Landsteiner-Wiener blood group	protein-coding	0.010000	0.472637	
mm_10777.1	chr2	24321119	24321319	+	1	NA	NA	NA	-15641	NM_031167	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.000000	0.422886	
mm_7732.1	chr1	130763978	130764178	-	1	NA	NA	NA	32102	NM_177604	212439	Mm.268547	NM_177604	ENSMUSG00000042510	AA986860	E030025M07|Sarg	expressed sequence AA986860	protein-coding	0.020000	0.542289	
mm_128632.1	chr15	59081905	59082105	-	1	NA	NA	NA	21	NM_001146180	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	metastasis suppressor 1	protein-coding	0.120000	0.597015	
mm_27746.1	chr3	69127004	69127204	-	1	NA	NA	NA	-12	NM_008467	16649	Mm.30601	NM_008467	ENSMUSG00000027782	Kpna4	1110058D08Rik|IPOA3	karyopherin (importin) alpha 4	protein-coding	0.125000	0.706468	
mm_61149.1	chr7	57792436	57792636	+	1	NA	NA	NA	201363	NM_008071	14402	Mm.8004	NM_008071	ENSMUSG00000033676	Gabrb3	A230092K12Rik|AW049585|Cp1|Gabrb-3|beta3	gamma-aminobutyric acid (GABA) A receptor, subunit beta 3	protein-coding	0.035000	0.527363	
mm_5144.1	chr1	9748160	9748360	-	1	NA	NA	NA	122	NM_173443	70675	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	0.090000	0.616915	
mm_99742.1	chr11	106416808	106417008	+	1	NA	NA	NA	-34127	NM_010494	15896	Mm.394	NM_010494	ENSMUSG00000001029	Icam2	CD102|Icam-2|Ly-60	intercellular adhesion molecule 2	protein-coding	0.005000	0.472637	-32(CCTTATAAACAG,+,0.00)
mm_89504.1	chr10	94073306	94073506	+	1	NA	NA	NA	37405	NM_053072	13998	Mm.269596	NM_053072	ENSMUSG00000020021	Fgd6	AA123052|Etohd4|ZFYVE24	FYVE, RhoGEF and PH domain containing 6	protein-coding	0.005000	0.542289	
mm_96464.1	chr11	67596532	67596732	+	1	NA	NA	NA	77	NM_001277079	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.020000	0.537313	
mm_43462.1	chr5	136691425	136691625	+	1	NA	NA	NA	-1621	NM_001303019	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.000000	0.497512	
mm_106851.1	chr12	8008287	8008487	+	1	NA	NA	NA	30710	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.363184	
mm_11123.1	chr2	28229030	28229230	+	1	NA	NA	NA	23441	NM_019498	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.030000	0.502488	
mm_172910.1	chr9	61914365	61914565	-	1	NA	NA	NA	45	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.095000	0.616915	
mm_68442.1	chr7	109986127	109986327	-	1	NA	NA	NA	3	NM_153525	233724	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	0.095000	0.611940	
mm_125175.1	chr15	31568733	31568933	+	1	NA	NA	NA	-79	NM_181588	69574	Mm.28108	NM_181588	ENSMUSG00000022235	Cmbl	2310016A09Rik	carboxymethylenebutenolidase-like (Pseudomonas)	protein-coding	0.045000	0.631841	
mm_121288.1	chr14	105258635	105258835	+	1	NA	NA	NA	62	NM_001190989	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.160000	0.751244	
mm_113821.1	chr13	46929762	46929962	+	1	NA	NA	NA	-144	NM_010617	16553	Mm.342703	NM_010617	ENSMUSG00000021375	Kif13a	4930505I07Rik|mKIAA4109	kinesin family member 13A	protein-coding	0.190000	0.865672	
mm_3926.1	chr1	162588112	162588312	+	1	NA	NA	NA	17384	NM_001347125	53330	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e	vesicle-associated membrane protein 4	protein-coding	0.005000	0.363184	
mm_63289.1	chr7	126797511	126797711	+	1	NA	NA	NA	1567	NM_001177307	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.035000	0.611940	
mm_131582.1	chr16	18428854	18429054	+	1	NA	NA	NA	-2238	NM_001111062	12846	Mm.100940	NM_007744	ENSMUSG00000000326	Comt	Comt1|D16Wsu103e|D330014B15Rik	catechol-O-methyltransferase	protein-coding	0.010000	0.547264	
mm_109563.1	chr12	111944540	111944740	+	1	NA	NA	NA	-158	NR_029464	77675	Mm.98331	NR_029464		5033406O09Rik	9130204G15Rik	RIKEN cDNA 5033406O09 gene	ncRNA	0.010000	0.572139	
mm_107776.1	chr12	59158188	59158388	+	1	NA	NA	NA	26835	NM_001165253	338320	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.005000	0.487562	
mm_96998.1	chr11	70715715	70715915	+	1	NA	NA	NA	9825	NR_105890	102465557		NR_105890	ENSMUSG00000105932	Mir6925	mmu-mir-6925	microRNA 6925	ncRNA	0.000000	0.432836	39(CACTATATAAAC,-,0.00)
mm_50176.1	chr6	41570530	41570730	+	1	NA	NA	NA	-34852	NM_001146351	13848	Mm.271976	NM_007680	ENSMUSG00000029869	Ephb6	Cekl|Mep	Eph receptor B6	protein-coding	0.000000	0.442786	
mm_40588.1	chr5	64160184	64160384	+	1	NA	NA	NA	24	NM_001310611	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.100000	0.696517	
mm_153346.1	chr19	39462999	39463199	-	1	NA	NA	NA	-24	NM_010002	13097	Mm.42100	NM_010002	ENSMUSG00000032808	Cyp2c38	-	cytochrome P450, family 2, subfamily c, polypeptide 38	protein-coding	0.000000	0.378109	-10(TGCTATAAAAGA,-,0.00)
mm_131737.1	chr16	22009407	22009607	+	1	NA	NA	NA	23	NR_027488	75826	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.145000	0.711443	
mm_157159.1	chrX	9463986	9464186	-	1	NA	NA	NA	5238	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.427861	
mm_147333.1	chr18	42898856	42899056	-	1	NA	NA	NA	550	NR_073583	72930	Mm.26134	NM_027531	ENSMUSG00000024500	Ppp2r2b	2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12	protein phosphatase 2, regulatory subunit B, beta	protein-coding	0.060000	0.631841	
mm_13201.1	chr2	93454571	93454771	+	1	NA	NA	NA	1852	NR_040533	100038525	Mm.440596	NR_040532	ENSMUSG00000075025	Gm10804	ENSMUSG00000075025	predicted gene 10804	ncRNA	0.040000	0.502488	
mm_121583.1	chr14	123987535	123987735	+	1	NA	NA	NA	0	NR_045479	69393	Mm.491348	NR_045479	ENSMUSG00000099994	1700024B18Rik	-	RIKEN cDNA 1700024B18 gene	ncRNA	0.010000	0.492537	
mm_3074.1	chr1	134276505	134276705	+	1	NA	NA	NA	-13399	NM_031189	17928	Mm.16528	NM_031189	ENSMUSG00000026459	Myog	MYF4|bHLHc3|myo	myogenin	protein-coding	0.010000	0.472637	
mm_93160.1	chr10	93177862	93178062	-	1	NA	NA	NA	15177	NR_035452	100316689		NR_035452	ENSMUSG00000089214	Mir1931	mir-1931|mmu-mir-1931	microRNA 1931	ncRNA	0.005000	0.368159	
mm_17066.1	chr2	22739784	22739984	-	1	NA	NA	NA	-34443	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.000000	0.467662	
mm_55774.1	chr6	78468460	78468660	-	1	NA	NA	NA	314	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.005000	0.462687	
mm_28347.1	chr3	89430647	89430847	-	1	NA	NA	NA	7	NM_001293767	68911	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	0.065000	0.711443	
mm_151656.1	chr19	4125689	4125889	-	1	NA	NA	NA	69	NM_016666	11632	Mm.10433	NM_016666	ENSMUSG00000024847	Aip	AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2	aryl-hydrocarbon receptor-interacting protein	protein-coding	0.075000	0.671642	
mm_7297.1	chr1	97910660	97910860	-	1	NA	NA	NA	137033	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA	0.020000	0.412935	
mm_149863.1	chr19	25122188	25122388	+	1	NA	NA	NA	-114914	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.030000	0.557214	-62(GCCTTAATGGCC,+,0.00)
mm_153624.1	chr19	44005388	44005588	-	1	NA	NA	NA	-18968	NM_030703	93721	Mm.206774	NM_030703	ENSMUSG00000025196	Cpn1	0610011F20Rik|CPN	carboxypeptidase N, polypeptide 1	protein-coding	0.010000	0.417910	
mm_169063.1	chr13	26492418	26492618	+	1	NA	NA	NA	-180112	NR_045933	73576	Mm.45473	NR_045933		1700092E19Rik	-	RIKEN cDNA 1700092E19 gene	ncRNA	0.055000	0.522388	
mm_133833.1	chr16	95921237	95921437	+	1	NA	NA	NA	7740	NR_040484	69776	Mm.120470	NR_040484	ENSMUSG00000086899	1600002D24Rik	-	RIKEN cDNA 1600002D24 gene	ncRNA	0.020000	0.502488	
mm_90335.1	chr10	127079065	127079265	+	1	NA	NA	NA	258	NM_001033263	216439	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.035000	0.636816	
mm_166201.1	chr5	38320133	38320333	+	1	NA	NA	NA	724	NM_013503	13492	Mm.167154	NM_013503	ENSMUSG00000039358	Drd5	D5R|Drd-5|Drd1b|Gpcr1	dopamine receptor D5	protein-coding	0.025000	0.592040	
mm_62302.1	chr7	100176572	100176772	+	1	NA	NA	NA	2	NM_001190869	57442	Mm.282386	NM_020574	ENSMUSG00000035165	Kcne3	2210017H05Rik|MiRP2	potassium voltage-gated channel, Isk-related subfamily, gene 3	protein-coding	0.010000	0.447761	
mm_126226.1	chr15	78930061	78930261	+	1	NA	NA	NA	3436	NM_008495	16852	Mm.43831	NM_008495	ENSMUSG00000068220	Lgals1	AA410090|Gal-1|Galbp|L-14.5|L14|Lect14|galectin-1	lectin, galactose binding, soluble 1	protein-coding	0.025000	0.562189	
mm_124312.1	chr14	103218852	103219052	-	1	NA	NA	NA	-119386	NM_001347600	50789	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.015000	0.537313	
mm_113778.1	chr13	45391672	45391872	+	1	NA	NA	NA	2030	NM_153789	218203	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.025000	0.442786	
mm_107801.1	chr12	64965666	64965866	+	1	NA	NA	NA	24	NM_177805	328108	Mm.138465	NM_177805	ENSMUSG00000035614	Fam179b	A430041B07Rik|BC062107|C130034K06|mKIAA0423	family with sequence similarity 179, member B	protein-coding	0.085000	0.686567	
mm_87127.1	chr10	33857612	33857812	+	1	NA	NA	NA	-10	NM_020565	57430	Mm.6590	NM_020565	ENSMUSG00000069668	Sult3a1	ST3A1|Sult-x2|Sultx2	sulfotransferase family 3A, member 1	protein-coding	0.000000	0.383085	
mm_46228.1	chr5	99037248	99037448	-	1	NA	NA	NA	-269	NM_008926	19092	Mm.263002	NM_008926	ENSMUSG00000029334	Prkg2	AW212535|CGKII|Prkgr2|cGK-II	protein kinase, cGMP-dependent, type II	protein-coding	0.115000	0.671642	
mm_130558.1	chr15	99248862	99249062	-	1	NA	NA	NA	-2826	NR_045627	73600	Mm.475134	NR_045627	ENSMUSG00000100599	1700120C14Rik	-	RIKEN cDNA 1700120C14 gene	ncRNA	0.025000	0.572139	
mm_166044.1	chr4	130549190	130549390	-	1	NA	NA	NA	24746	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.005000	0.427861	
mm_114089.1	chr13	54621687	54621887	+	1	NA	NA	NA	3	NM_178397	76577	Mm.194459	NM_178397	ENSMUSG00000025873	Faf2	2210404D11Rik|AI462440|Ubxd8|mKIAA0887	Fas associated factor family member 2	protein-coding	0.115000	0.661692	
mm_74604.1	chr8	11715178	11715378	-	1	NA	NA	NA	-12827	NM_001113517	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.040000	0.442786	
mm_126564.1	chr15	82169922	82170122	+	1	NA	NA	NA	22753	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.045000	0.641791	
mm_76172.1	chr8	82392314	82392514	-	1	NA	NA	NA	10172	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.010000	0.432836	72(ACCCATAAAAAC,-,0.00)
mm_53864.1	chr6	149325388	149325588	+	1	NA	NA	NA	16074	NM_001289662	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.000000	0.338308	
mm_108211.1	chr12	76938571	76938771	+	1	NA	NA	NA	23577	NM_008558	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.030000	0.577114	
mm_139394.1	chr17	52303967	52304167	+	1	NA	NA	NA	-298642	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.000000	0.318408	
mm_33787.1	chr4	134923491	134923691	+	1	NA	NA	NA	-34	NM_023665	27981	Mm.331964	NM_023665	ENSMUSG00000037266	Rsrp1	2700043I21Rik|D4Ucla2|D4Wsu53e	arginine/serine rich protein 1	protein-coding	0.090000	0.606965	
mm_41885.1	chr5	105446784	105446984	+	1	NA	NA	NA	31109	NM_001033550	433926	Mm.439781	NM_001033550	ENSMUSG00000070639	Lrrc8b	R75581|Ta-lrrp|mKIAA0231	leucine rich repeat containing 8 family, member B	protein-coding	0.000000	0.348259	4(GCCCTTATATAG,-,0.00),6(CCTTATATAGAA,+,0.00)
mm_16003.1	chr2	167358831	167359031	+	1	NA	NA	NA	-9753	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.030000	0.512438	
mm_164159.1	chr15	72814327	72814527	+	1	NA	NA	NA	-4103	NR_002864	353342	Mm.440245	NR_002864	ENSMUSG00000106847	Peg13	-	paternally expressed 13	ncRNA	0.005000	0.502488	
mm_34407.1	chr4	145236335	145236535	+	1	NA	NA	NA	10435	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.010000	0.527363	
mm_106799.1	chr12	4917258	4917458	+	1	NA	NA	NA	5	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.120000	0.701493	
mm_58303.1	chr6	146113131	146113331	-	1	NA	NA	NA	179084	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.015000	0.542289	
mm_474.1	chr1	36490053	36490253	+	1	NA	NA	NA	18556	NM_033570	94220	Mm.422638	NM_033570	ENSMUSG00000037408	Cnnm4	5430430O18Rik|Acdp4	cyclin M4	protein-coding	0.005000	0.472637	
mm_86009.1	chr9	112233296	112233496	-	1	NA	NA	NA	-881	NR_033432	620760	Mm.259863	NR_015468	ENSMUSG00000087038	2900079G21Rik	C130083B14|Gm6179	RIKEN cDNA 2900079G21 gene	ncRNA	0.000000	0.383085	
mm_5301.1	chr1	21299896	21300096	-	1	NA	NA	NA	-1684	NR_002858	241041	Mm.290634	NR_002858	ENSMUSG00000025936	Gm4956	EG241041	predicted gene 4956	pseudo	0.005000	0.402985	
mm_98181.1	chr11	87761959	87762159	+	1	NA	NA	NA	1518	NM_172449	207777	Mm.342019	NM_172449	ENSMUSG00000034156	Bzrap1	D230016K05|PRAX-1|Tspoap1|mKIAA0612	benzodiazepine receptor associated protein 1	protein-coding	0.010000	0.557214	
mm_140654.1	chr17	12725309	12725509	-	1	NA	NA	NA	-15902	NR_002853	104103	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.000000	0.407960	
mm_168008.1	chrY	6446485	6446685	-	1	NA	NA	NA	721192	NM_001101623	100040160	Mm.482062	NM_001101623	ENSMUSG00000094081	Gm20826	-	predicted gene, 20826	protein-coding	0.000000	0.318408	
mm_149378.1	chr19	11375502	11375702	+	1	NA	NA	NA	114	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.010000	0.467662	
mm_73649.1	chr8	110922933	110923133	+	1	NA	NA	NA	3168	NM_009179	20444	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	0.015000	0.417910	34(GTCTTTATATGC,-,0.00)
mm_140856.1	chr17	23721904	23722104	-	1	NA	NA	NA	-4332	NM_023058	268930	Mm.182193	NM_023058	ENSMUSG00000023908	Pkmyt1	6230424P17|AW209059|Myt1	protein kinase, membrane associated tyrosine/threonine 1	protein-coding	0.010000	0.542289	
mm_125897.1	chr15	75909659	75909859	+	1	NA	NA	NA	24	NM_178646	105734	Mm.275583	NM_178646	ENSMUSG00000103906	Tigd5	AA409802|AA409995|AI666797	tigger transposable element derived 5	protein-coding	0.130000	0.781095	
mm_153321.1	chr19	38118261	38118461	-	1	NA	NA	NA	6450	NM_011255	19662	Mm.2605	NM_011255	ENSMUSG00000024990	Rbp4	Rbp-4	retinol binding protein 4, plasma	protein-coding	0.035000	0.572139	
mm_66991.1	chr7	64287459	64287659	-	1	NA	NA	NA	-111	NM_172742	233315	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0.120000	0.691542	
mm_76803.1	chr8	104293099	104293299	-	1	NA	NA	NA	-18	NM_027022	73381	Mm.272746	NM_027022	ENSMUSG00000074127	Cmtm2a	1700001K04Rik|1700041N15Rik|1700063K20Rik|AI449770|ARR19|C32|CKLF3|CKLF4|CKLF5|Cklf|Cklf1|Cklfsf2-1b|Cklfsf2a|UCK-1	CKLF-like MARVEL transmembrane domain containing 2A	protein-coding	0.025000	0.572139	
mm_154913.1	chrX	21484523	21484723	+	1	NA	NA	NA	-1	NM_007429	11609	Mm.2679	NM_007429	ENSMUSG00000068122	Agtr2	AI316812|AW107640	angiotensin II receptor, type 2	protein-coding	0.015000	0.467662	
mm_35663.1	chr4	43562134	43562334	-	1	NA	NA	NA	349	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.110000	0.711443	
mm_69855.1	chr7	141429462	141429662	-	1	NA	NA	NA	-142	NM_021316	57754	Mm.87027	NM_021316	ENSMUSG00000060240	Cend1	1500001H12Rik|AI415214|BM88	cell cycle exit and neuronal differentiation 1	protein-coding	0.030000	0.562189	
mm_97239.1	chr11	75661519	75661719	+	1	NA	NA	NA	5604	NM_001080775	17913	Mm.234502	NM_008659	ENSMUSG00000017774	Myo1c	C80397|MMIb|MYO1E|NMI|mm1beta|myr2	myosin IC	protein-coding	0.025000	0.577114	
mm_138387.1	chr17	35050104	35050304	+	1	NA	NA	NA	-39	NM_033444	114584	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.050000	0.671642	
mm_39297.1	chr5	5504720	5504920	+	1	NA	NA	NA	9969	NM_001193660	64945	Mm.40132	NM_022890	ENSMUSG00000046798	Cldn12	-	claudin 12	protein-coding	0.010000	0.482587	
mm_162446.1	chr1	119523670	119523870	+	1	NA	NA	NA	-2384	NM_146103	226351	Mm.439806	NM_146103	ENSMUSG00000098923	Tmem185b	2500001K11Rik	transmembrane protein 185B	protein-coding	0.010000	0.497512	
mm_72482.1	chr8	83652559	83652759	+	1	NA	NA	NA	-19	NM_018771	67903	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	0.145000	0.756219	
mm_162626.1	chr1	184277021	184277221	-	1	NA	NA	NA	242660	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.010000	0.497512	
mm_62912.1	chr7	117568401	117568601	+	1	NA	NA	NA	187522	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.010000	0.492537	
mm_167710.1	chr9	96891402	96891602	-	1	NA	NA	NA	-2028	NM_001289645	235534	Mm.233031	NM_153420	ENSMUSG00000043587	Pxylp1	9430094M07Rik|Acpl2|BB177120|C130099A20Rik	2-phosphoxylose phosphatase 1	protein-coding	0.010000	0.537313	88(CCTTAAAGACCC,+,0.00)
mm_95888.1	chr11	58104160	58104360	+	1	NA	NA	NA	107	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.075000	0.681592	
mm_25883.1	chr3	130873946	130874146	+	1	NA	NA	NA	-143648	NM_001005859	68436	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.010000	0.497512	
mm_90623.1	chr10	128458879	128459079	+	1	NA	NA	NA	-257	NM_001114096	68094	Mm.417338	NM_198160	ENSMUSG00000025369	Smarcc2	5930405J04Rik	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	protein-coding	0.110000	0.711443	
mm_127285.1	chr15	100005053	100005253	+	1	NA	NA	NA	-31866	NR_028124	70281	Mm.484037	NR_028124	ENSMUSG00000100084	2310068J16Rik	-	RIKEN cDNA 2310068J16 gene	ncRNA	0.010000	0.442786	
mm_1472.1	chr1	69951544	69951744	+	1	NA	NA	NA	29	NM_025728	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	0.035000	0.467662	
mm_171564.1	chr4	147275685	147275885	+	1	NA	NA	NA	99919	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.135000	0.721393	
mm_66280.1	chr7	37769653	37769853	-	1	NA	NA	NA	-1	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.085000	0.562189	
mm_114152.1	chr13	55399593	55399793	+	1	NA	NA	NA	45	NM_011392	20505	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	0.010000	0.527363	
mm_46564.1	chr5	107109231	107109431	-	1	NA	NA	NA	144770	NM_001271566	12545	Mm.20842	NM_009863	ENSMUSG00000029283	Cdc7	AI597260|Cdc7l1|muCdc7	cell division cycle 7 (S. cerevisiae)	protein-coding	0.025000	0.462687	
mm_120106.1	chr14	59201194	59201394	+	1	NA	NA	NA	66	NM_027764	71330	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	0.135000	0.766169	
mm_1531.1	chr1	72849125	72849325	+	1	NA	NA	NA	23838	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.035000	0.611940	
mm_153826.1	chr19	46312277	46312477	-	1	NA	NA	NA	6447	NM_001177370	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.010000	0.487562	
mm_46583.1	chr5	107597439	107597639	-	1	NA	NA	NA	100	NM_133248	170823	Mm.41417	NM_133248	ENSMUSG00000029276	Glmn	9330160J16Rik|AW227515|Fap48|Fap68	glomulin, FKBP associated protein	protein-coding	0.095000	0.711443	
mm_56966.1	chr6	120083471	120083671	-	1	NA	NA	NA	-9809	NM_016718	29862	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.020000	0.522388	
mm_108475.1	chr12	83659322	83659522	+	1	NA	NA	NA	27188	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.010000	0.343284	
mm_96485.1	chr11	67684957	67685157	+	1	NA	NA	NA	-10269	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.005000	0.472637	
mm_94877.1	chr11	24128969	24129169	+	1	NA	NA	NA	48374	NM_001159290	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.005000	0.388060	
mm_122591.1	chr14	50897423	50897623	-	1	NA	NA	NA	-4268	NM_001166651	546611	Mm.390692	NM_001166651	ENSMUSG00000090799	Klhl33	EG546611	kelch-like 33	protein-coding	0.015000	0.547264	
mm_79791.1	chr9	63737717	63737917	+	1	NA	NA	NA	20177	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.025000	0.522388	
mm_1857.1	chr1	84839523	84839723	+	1	NA	NA	NA	-218	NM_025386	66153	Mm.381192	NM_025386	ENSMUSG00000073633	Fbxo36	0610008D19Rik|1110020F21Rik|2410002G19Rik|D1Ertd757e	F-box protein 36	protein-coding	0.045000	0.572139	
mm_110800.1	chr12	72212097	72212297	-	1	NA	NA	NA	23549	NR_104446	104001	Mm.221275	NM_153457	ENSMUSG00000021087	Rtn1	Nsp	reticulon 1	protein-coding	0.030000	0.477612	
mm_76779.1	chr8	96403803	96404003	-	1	NA	NA	NA	142070	NR_039538	100628567		NR_039538	ENSMUSG00000104794	Mir28c	mmu-mir-28c	microRNA 28c	ncRNA	0.010000	0.457711	
mm_73708.1	chr8	111687108	111687308	+	1	NA	NA	NA	2466	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.030000	0.606965	
mm_104080.1	chr11	86586945	86587145	-	1	NA	NA	NA	-2887	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.015000	0.452736	
mm_66227.1	chr7	35056324	35056524	-	1	NA	NA	NA	142	NM_009884	12611	Mm.273090	NM_009884	ENSMUSG00000056216	Cebpg	C/EBP[g]|C/EBPgamma|GPE1-BP|Gpe1bp|Ig/EBP	CCAAT/enhancer binding protein (C/EBP), gamma	protein-coding	0.160000	0.781095	
mm_19440.1	chr2	91965445	91965645	-	1	NA	NA	NA	-1982	NM_138306	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.065000	0.681592	
mm_30546.1	chr4	3683864	3684064	+	1	NA	NA	NA	5843	NM_010747	17096	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.005000	0.417910	-94(CCATTTAAAAAC,+,0.00)
mm_2085.1	chr1	87676358	87676558	+	1	NA	NA	NA	56146	NM_001110193	16331	Mm.15105	NM_010566	ENSMUSG00000026288	Inpp5d	SHIP|SHIP-1|SHIP1|SIP-145|p150Ship|s-SHIP	inositol polyphosphate-5-phosphatase D	protein-coding	0.030000	0.507463	
mm_6749.1	chr1	83408070	83408270	-	1	NA	NA	NA	30	NM_172430	77629	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	0.050000	0.631841	
mm_74976.1	chr8	27141394	27141594	-	1	NA	NA	NA	-1416	NR_045840	71082	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.005000	0.353234	
mm_5590.1	chr1	39555433	39555633	-	1	NA	NA	NA	-6693	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.020000	0.507463	
mm_103427.1	chr11	75630643	75630843	-	1	NA	NA	NA	-277	NM_008916	19062	Mm.1458	NM_008916	ENSMUSG00000006127	Inpp5k	C62|Pps|SKIP	inositol polyphosphate 5-phosphatase K	protein-coding	0.110000	0.691542	
mm_69949.1	chr7	142341928	142342128	-	1	NA	NA	NA	30231	NM_177265	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.000000	0.487562	
mm_71860.1	chr8	68993263	68993463	+	1	NA	NA	NA	-95373	NM_007509	11966	Mm.249096	NM_007509	ENSMUSG00000006273	Atp6v1b2	AI194269|AI790362|Atp6b2|HO57|R74844	ATPase, H+ transporting, lysosomal V1 subunit B2	protein-coding	0.015000	0.487562	
mm_137060.1	chr17	17949863	17950063	+	1	NA	NA	NA	-20495	NM_008042	14294	Mm.378918	NM_008042	ENSMUSG00000079700	Fpr3	ALX|Fpr-rs1|Fpr-s1|Fprl1|LXA4-R|Lxa4r	formyl peptide receptor 3	protein-coding	0.000000	0.298507	-1(TCCTCTTTAAGG,-,0.00),1(CTCTTTAAGGGC,+,0.00)
mm_143540.1	chr17	74016807	74017007	-	1	NA	NA	NA	31009	NM_053188	94224	Mm.38933	NM_053188	ENSMUSG00000038541	Srd5a2	5ART2|S5AR 2	steroid 5 alpha-reductase 2	protein-coding	0.000000	0.378109	
mm_149255.1	chr19	10425929	10426129	+	1	NA	NA	NA	31418	NM_001111140	278795	Mm.490638	NM_001111140	ENSMUSG00000090291	Lrrc10b	Gm705|SerdinR	leucine rich repeat containing 10B	protein-coding	0.025000	0.651741	
mm_412.1	chr1	34227819	34228019	+	1	NA	NA	NA	67589	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.035000	0.442786	
mm_161261.1	chr13	119488787	119488987	+	1	NA	NA	NA	27	NM_001177666	633640	Mm.46679	NM_001039244	ENSMUSG00000074634	Tmem267	EG633640|Gm7120	transmembrane protein 267	protein-coding	0.090000	0.522388	
mm_135444.1	chr16	45492840	45493040	-	1	NA	NA	NA	29	NM_001005854	208166	Mm.451852	NM_001005854	ENSMUSG00000053182	Gm609	Gm1749|isec1	predicted gene 609	protein-coding	0.030000	0.407960	
mm_108511.1	chr12	83987813	83988013	+	1	NA	NA	NA	52	NM_134188	171210	Mm.371675	NM_134188	ENSMUSG00000021226	Acot2	AA571646|MTE-I|Mte1	acyl-CoA thioesterase 2	protein-coding	0.055000	0.582090	
mm_112618.1	chr13	15506649	15506849	+	1	NA	NA	NA	43026	NM_008130	14634	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0.000000	0.293532	
mm_136319.1	chr16	91931528	91931728	-	1	NA	NA	NA	2	NM_138597	28080	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.105000	0.621891	
mm_129852.1	chr15	83172124	83172324	-	1	NA	NA	NA	-16	NM_029787	109754	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.095000	0.691542	
mm_94016.1	chr10	127661347	127661547	-	1	NA	NA	NA	5256	NM_001122895	17937	Mm.336898	NM_008668	ENSMUSG00000025402	Nab2	AI451907	Ngfi-A binding protein 2	protein-coding	0.015000	0.582090	
mm_15334.1	chr2	155929996	155930196	+	1	NA	NA	NA	214	NM_018888	56046	Mm.158827	NM_018888	ENSMUSG00000005882	Uqcc1	2310079L17Rik|2410003P15Rik|3110038N19Rik|Bfzb|Bfzp|Cbp3|Uqcc	ubiquinol-cytochrome c reductase complex assembly factor 1	protein-coding	0.070000	0.587065	
mm_15024.1	chr2	152686023	152686223	+	1	NA	NA	NA	-1025	NM_025543	66405	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	0.020000	0.522388	
mm_156636.1	chrX	156881351	156881551	+	1	NA	NA	NA	341968	NR_033598	74941	Mm.484588	NR_033598		4930503H13Rik	-	gem (nuclear organelle) associated protein 8 pseudogene	pseudo	0.005000	0.412935	
mm_26048.1	chr3	135689045	135689245	+	1	NA	NA	NA	2402	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.040000	0.497512	
mm_125191.1	chr15	32675562	32675762	+	1	NA	NA	NA	-245061	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0.000000	0.368159	
mm_120513.1	chr14	66635207	66635407	+	1	NA	NA	NA	56	NM_001271760	11549	Mm.57064	NM_013461	ENSMUSG00000045875	Adra1a	Adra1c	adrenergic receptor, alpha 1a	protein-coding	0.050000	0.477612	
mm_116239.1	chr13	33905090	33905290	-	1	NA	NA	NA	518	NM_148942	97848	Mm.272188	NM_148942	ENSMUSG00000052180	Serpinb6c	C76171|C76174|SPI3C|SPIC|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6c	protein-coding	0.015000	0.522388	-1(GCTTTTATAGAC,+,0.00)
mm_3796.1	chr1	157440538	157440738	+	1	NA	NA	NA	-17944	NM_001033284	226527	Mm.215960	NM_001033284	ENSMUSG00000033488	BC026585	-	cDNA sequence BC026585	protein-coding	0.025000	0.502488	
mm_63566.1	chr7	128116185	128116385	+	1	NA	NA	NA	-13283	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.000000	0.472637	
mm_171062.1	chr3	109284001	109284201	-	1	NA	NA	NA	-56582	NM_020505	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.005000	0.393035	
mm_157581.1	chrX	52913052	52913252	-	1	NA	NA	NA	938	NM_001290546	70998	Mm.26870	NM_027642	ENSMUSG00000025626	Phf6	2700007B13Rik|4931428F02Rik|mKIAA1823	PHD finger protein 6	protein-coding	0.050000	0.457711	
mm_118014.1	chr13	100744526	100744726	-	1	NA	NA	NA	33	NM_001190264	66128	Mm.306173	NM_025369	ENSMUSG00000061474	Mrps36	1110018B13Rik|S36mt	mitochondrial ribosomal protein S36	protein-coding	0.065000	0.651741	
mm_149168.1	chr19	9075749	9075949	+	1	NA	NA	NA	12107	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.010000	0.417910	
mm_57537.1	chr6	126641992	126642192	-	1	NA	NA	NA	3709	NM_010595	16485	Mm.40424	NM_010595	ENSMUSG00000047976	Kcna1	AI840627|Kca1-1|Kv1.1|MBK1|Mk-1|Shak|mceph	potassium voltage-gated channel, shaker-related subfamily, member 1	protein-coding	0.025000	0.522388	
mm_115817.1	chr13	19774104	19774304	-	1	NA	NA	NA	-41253	NM_175688	319293	Mm.246657	NM_175688	ENSMUSG00000047462	A530099J19Rik	-	RIKEN cDNA A530099J19 gene	protein-coding	0.035000	0.388060	
mm_28847.1	chr3	96727379	96727579	-	1	NA	NA	NA	-40	NM_028925	74414	Mm.276043	NM_028925	ENSMUSG00000028099	Polr3c	4933407E01Rik|RPC3|RPC62	polymerase (RNA) III (DNA directed) polypeptide C	protein-coding	0.070000	0.636816	
mm_7236.1	chr1	93445551	93445751	-	1	NA	NA	NA	50	NM_001301364	110611	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0.145000	0.741294	-34(CCCTATATAGCA,+,0.00)
mm_161748.1	chr17	34264779	34264979	+	1	NA	NA	NA	1652	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.125000	0.646766	
mm_3702.1	chr1	153762882	153763082	+	1	NA	NA	NA	13556	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.025000	0.532338	
mm_148345.1	chr18	84664773	84664973	-	1	NA	NA	NA	-14778	NM_177450	338403	Mm.23278	NM_177450	ENSMUSG00000056162	Cndp1	AI746433|Cn1	carnosine dipeptidase 1 (metallopeptidase M20 family)	protein-coding	0.005000	0.542289	
mm_27217.1	chr3	35937327	35937527	-	1	NA	NA	NA	-4461	NM_001205361	114893	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.010000	0.492537	
mm_99314.1	chr11	101424991	101425191	+	1	NA	NA	NA	6	NM_172566	217201	Mm.305941	NM_172566	ENSMUSG00000035007	Rundc1	AW125546|D930024B17	RUN domain containing 1	protein-coding	0.085000	0.641791	
mm_131228.1	chr16	10192819	10193019	+	1	NA	NA	NA	13	NM_029253	75329	Mm.108729	NM_029253	ENSMUSG00000039200	Atf7ip2	4930558K11Rik|BC018510|Get-1|PSM2	activating transcription factor 7 interacting protein 2	protein-coding	0.085000	0.676617	
mm_26457.1	chr3	142765124	142765324	+	1	NA	NA	NA	-23	NM_145546	229906	Mm.271756	NM_145546	ENSMUSG00000028271	Gtf2b	-	general transcription factor IIB	protein-coding	0.135000	0.681592	-33(GCGCATAAAAGC,-,0.00)
mm_132200.1	chr16	32550204	32550404	+	1	NA	NA	NA	54023	NM_199309	245308	Mm.76859	NM_199309	ENSMUSG00000052363	Zdhhc19	Gm1744|Gm616	zinc finger, DHHC domain containing 19	protein-coding	0.020000	0.577114	
mm_11202.1	chr2	29125262	29125462	+	1	NA	NA	NA	370	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.125000	0.706468	
mm_118194.1	chr13	107842206	107842406	-	1	NA	NA	NA	47758	NM_145456	67263	Mm.490418	NM_145456	ENSMUSG00000032846	Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.015000	0.388060	-1(TTGTATAAAAGA,-,0.00)
mm_117526.1	chr13	81710873	81711073	-	1	NA	NA	NA	40	NM_001081176	67486	Mm.279781	NM_001081176	ENSMUSG00000035834	Polr3g	2310047G20Rik|AV275904|RPC32|RPC7	polymerase (RNA) III (DNA directed) polypeptide G	protein-coding	0.095000	0.676617	
mm_88312.1	chr10	75517451	75517651	+	1	NA	NA	NA	-170	NM_175133	68778	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.070000	0.676617	
mm_74945.1	chr8	25847590	25847790	-	1	NA	NA	NA	4	NM_001080793	23808	Mm.27706	NM_011791	ENSMUSG00000031575	Ash2l	-	ash2 (absent, small, or homeotic)-like (Drosophila)	protein-coding	0.030000	0.522388	
mm_172709.1	chr8	69563304	69563504	-	1	NA	NA	NA	61771	NM_001045553	234362	Mm.458487	NM_172754	ENSMUSG00000060427	Zfp868	AI449175|AW108241|C530032E20|mszf62	zinc finger protein 868	protein-coding	0.005000	0.467662	
mm_29771.1	chr3	127240680	127240880	-	1	NA	NA	NA	79475	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.005000	0.323383	
mm_39317.1	chr5	8065126	8065326	+	1	NA	NA	NA	8684	NM_001080974	109552	Mm.96211	NM_025618	ENSMUSG00000003161	Sri	2210417O06Rik|2900070H08Rik|Sor	sorcin	protein-coding	0.005000	0.477612	
mm_141775.1	chr17	34287700	34287900	-	1	NA	NA	NA	-29	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.025000	0.542289	
mm_75503.1	chr8	53601725	53601925	-	1	NA	NA	NA	37240	NM_146208	234258	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0.015000	0.422886	
mm_57945.1	chr6	134792620	134792820	-	1	NA	NA	NA	-92	NM_001048054	70686	Mm.491182	NM_130447	ENSMUSG00000030203	Dusp16	3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm	dual specificity phosphatase 16	protein-coding	0.085000	0.641791	
mm_160679.1	chr10	13966304	13966504	+	1	NA	NA	NA	25	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.085000	0.641791	
mm_32313.1	chr4	103324830	103325030	+	1	NA	NA	NA	11084	NM_025909	67013	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	0.000000	0.318408	
mm_96080.1	chr11	60104892	60105092	+	1	NA	NA	NA	-21	NM_009021	19377	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.135000	0.741294	
mm_17854.1	chr2	34771683	34771883	-	1	NA	NA	NA	-307	NM_001163434	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.060000	0.631841	
mm_113747.1	chr13	44730794	44730994	+	1	NA	NA	NA	120	NM_001205044	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.075000	0.696517	
mm_166811.1	chr7	12998983	12999183	+	1	NA	NA	NA	-891	NM_009512	26459	Mm.10984	NM_009512	ENSMUSG00000030382	Slc27a5	FACVL3|FATP5|VLCS-H2|VLCSH2|Vlacsr	solute carrier family 27 (fatty acid transporter), member 5	protein-coding	0.005000	0.402985	
mm_10686.1	chr2	22622036	22622236	+	1	NA	NA	NA	-191	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.045000	0.616915	
mm_118725.1	chr14	22222230	22222430	+	1	NA	NA	NA	202618	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.000000	0.417910	
mm_103259.1	chr11	71019150	71019350	-	1	NA	NA	NA	53	NM_001291147	116891	Mm.28131	NM_033562	ENSMUSG00000018442	Derl2	CGI-101|Derlin-2|F-lana|Flana	Der1-like domain family, member 2	protein-coding	0.095000	0.676617	
mm_27338.1	chr3	50410065	50410265	-	1	NA	NA	NA	33448	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.303483	
mm_156911.1	chrX	169058706	169058906	+	1	NA	NA	NA	22195	NR_109847	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.005000	0.358209	
mm_132862.1	chr16	48479469	48479669	+	1	NA	NA	NA	48332	NM_010816	17450	Mm.250060	NM_010816	ENSMUSG00000022652	Morc1	Morc	microrchidia 1	protein-coding	0.015000	0.532338	
mm_22479.1	chr3	5218967	5219167	+	1	NA	NA	NA	513	NM_030708	80892	Mm.41522	NM_030708	ENSMUSG00000025255	Zfhx4	A930021B15|C130041O22Rik|Zfh-4|Zfh4	zinc finger homeodomain 4	protein-coding	0.055000	0.512438	
mm_137590.1	chr17	28040723	28040923	+	1	NA	NA	NA	39761	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.045000	0.646766	
mm_140425.1	chr17	87986411	87986611	+	1	NA	NA	NA	11461	NM_010830	17688	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.035000	0.522388	
mm_31540.1	chr4	55477647	55477847	+	1	NA	NA	NA	54728	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.020000	0.527363	
mm_34574.1	chr4	150066038	150066238	+	1	NA	NA	NA	-2316	NR_029751	723848		NR_029751	ENSMUSG00000065493	Mir34a	Mirn34a|mir-34a|mmu-mir-34a	microRNA 34a	ncRNA	0.025000	0.497512	-7(TTTTTTAAAGCA,+,0.00),74(CTTTCTAAAAGC,-,0.00)
mm_77881.1	chr9	7277870	7278070	+	1	NA	NA	NA	5456	NM_008607	17386	Mm.5022	NM_008607	ENSMUSG00000050578	Mmp13	Clg|MMP-13|Mmp1	matrix metallopeptidase 13	protein-coding	0.015000	0.457711	
mm_121848.1	chr14	20640841	20641041	-	1	NA	NA	NA	15599	NM_021508	59011	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0.110000	0.671642	
mm_42673.1	chr5	119671746	119671946	+	1	NA	NA	NA	613	NM_011535	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.040000	0.442786	-28(CTCTTTAAAAGC,-,0.00),-27(TCTTTAAAAGCG,+,0.00)
mm_22108.1	chr2	170108813	170109013	-	1	NA	NA	NA	22307	NM_001033299	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.015000	0.417910	
mm_21155.1	chr2	154558766	154558966	-	1	NA	NA	NA	-13	NM_021546	56846	Mm.143748	NM_021546	ENSMUSG00000027489	Necab3	2900010M17Rik|AI853434|Apba2bp|Nip1|XB51	N-terminal EF-hand calcium binding protein 3	protein-coding	0.095000	0.741294	
mm_105745.1	chr11	109420540	109420740	-	1	NA	NA	NA	-5306	NM_025275	13929	Mm.211850	NM_025275	ENSMUSG00000020610	Amz2	AA408420|ESTM12|X83328	archaelysin family metallopeptidase 2	protein-coding	0.040000	0.402985	
mm_48035.1	chr5	136272596	136272796	-	1	NA	NA	NA	-27756	NM_018825	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.005000	0.368159	
mm_102256.1	chr11	55309995	55310195	-	1	NA	NA	NA	2162	NM_001029988	245827	Mm.339363	NM_001029988	ENSMUSG00000055333	Fat2	EMI2|Fath2|Gm523|mKIAA0811	FAT atypical cadherin 2	protein-coding	0.005000	0.552239	
mm_143996.1	chr17	88008788	88008988	-	1	NA	NA	NA	33838	NM_010830	17688	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.020000	0.422886	
mm_104261.1	chr11	88934135	88934335	-	1	NA	NA	NA	21207	NM_029023	74617	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	0.010000	0.398010	
mm_98882.1	chr11	97815545	97815745	+	1	NA	NA	NA	15973	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.025000	0.577114	
mm_80911.1	chr9	100643660	100643860	+	1	NA	NA	NA	137	NM_009282	20842	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	0.145000	0.746269	
mm_139329.1	chr17	48973961	48974161	+	1	NA	NA	NA	41479	NM_027452	70530	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0.000000	0.427861	
mm_141591.1	chr17	32420876	32421076	-	1	NA	NA	NA	-1	NR_073184	57757	Mm.86752	NM_021319	ENSMUSG00000079563	Pglyrp2	C730002N09Rik|PGRP-L|Pglyrpl|tagL	peptidoglycan recognition protein 2	protein-coding	0.025000	0.552239	
mm_75624.1	chr8	64620395	64620595	-	1	NA	NA	NA	72614	NM_013494	12876	Mm.31395	NM_013494	ENSMUSG00000037852	Cpe	CPH|Cph-1|Cph1|R74677|fat	carboxypeptidase E	protein-coding	0.015000	0.502488	
mm_116311.1	chr13	37049112	37049312	-	1	NA	NA	NA	1	NM_028784	74145	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0.015000	0.542289	
mm_170787.1	chr2	175010118	175010318	+	1	NA	NA	NA	57551	NM_001085546	664987		NM_001085546	ENSMUSG00000078905	Gm14393	OTTMUSG00000016546	predicted gene 14393	protein-coding	0.005000	0.457711	
mm_93140.1	chr10	92164683	92164883	-	1	NA	NA	NA	395	NR_028262	110333	Mm.429764	NR_028262		Rmst	100041799|AI853140|C230053E11Rik|D930049J19Rik|Dmt2|Gm3515|M2|Ncrms	rhabdomyosarcoma 2 associated transcript (non-coding RNA)	ncRNA	0.010000	0.497512	
mm_7839.1	chr1	132357389	132357589	-	1	NA	NA	NA	10459	NM_001311108	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.035000	0.656716	
mm_13729.1	chr2	117965975	117966175	+	1	NA	NA	NA	144147	NR_040631	73938	Mm.399107	NR_040631	ENSMUSG00000086221	4930412B13Rik	-	RIKEN cDNA 4930412B13 gene	ncRNA	0.005000	0.407960	
mm_59527.1	chr7	27649800	27650000	+	1	NA	NA	NA	-4024	NM_028417	73032	Mm.44095	NM_028417	ENSMUSG00000007944	Ttc9b	2900074C18Rik	tetratricopeptide repeat domain 9B	protein-coding	0.035000	0.606965	
mm_13860.1	chr2	119715310	119715510	+	1	NA	NA	NA	-26927	NM_146125	228550	Mm.65337	NM_146125	ENSMUSG00000027296	Itpka	-	inositol 1,4,5-trisphosphate 3-kinase A	protein-coding	0.010000	0.398010	
mm_158280.1	chrX	111536209	111536409	-	1	NA	NA	NA	1650	NM_025949	67071	Mm.37617	NM_025949	ENSMUSG00000025665	Rps6ka6	2610524K04Rik|RSK4|S6K-alpha-6	ribosomal protein S6 kinase polypeptide 6	protein-coding	0.020000	0.457711	
mm_129034.1	chr15	74983323	74983523	-	1	NA	NA	NA	7	NM_020498	57248	Mm.358339	NM_020498	ENSMUSG00000022586	Ly6i	AI789751|Ly-6I|Ly-6M	lymphocyte antigen 6 complex, locus I	protein-coding	0.010000	0.437811	
mm_4179.1	chr1	171155421	171155621	+	1	NA	NA	NA	3	NM_001315500	17528	Mm.9986	NM_008623	ENSMUSG00000056569	Mpz	Mpp|P-zero|P0	myelin protein zero	protein-coding	0.010000	0.611940	
mm_68897.1	chr7	126449196	126449396	-	1	NA	NA	NA	13777	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.000000	0.432836	
mm_66211.1	chr7	34313450	34313650	-	1	NA	NA	NA	-27941	NM_172741	233103	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	0.150000	0.781095	
mm_102057.1	chr11	52252794	52252994	-	1	NA	NA	NA	20899	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.005000	0.522388	
mm_21608.1	chr2	164254577	164254777	-	1	NA	NA	NA	1966	NM_173377	329557	Mm.118769	NM_173377	ENSMUSG00000050383	Svs3b	9530004A22Rik	seminal vesicle secretory protein 3B	protein-coding	0.005000	0.477612	
mm_83671.1	chr9	49765819	49766019	-	1	NA	NA	NA	33150	NM_001081445	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding	0.000000	0.432836	-39(GCTTATAGACTG,+,0.00)
mm_12581.1	chr2	73312549	73312749	+	1	NA	NA	NA	-3	NM_029022	74616	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	0.100000	0.641791	
mm_55977.1	chr6	85868991	85869191	-	1	NA	NA	NA	46	NM_053096	93673	Mm.24251	NM_053096	ENSMUSG00000033634	Nat8f2	Cml2	N-acetyltransferase 8 (GCN5-related) family member 2	protein-coding	0.005000	0.467662	
mm_138616.1	chr17	35823299	35823499	+	1	NA	NA	NA	42	NM_008027	14251	Mm.2931	NM_008027	ENSMUSG00000059714	Flot1	reggie-2	flotillin 1	protein-coding	0.095000	0.706468	
mm_98233.1	chr11	88098845	88099045	+	1	NA	NA	NA	-201	NM_198013	103841	Mm.374846	NM_198013	ENSMUSG00000018378	Cuedc1	AI841487|C330016O16Rik	CUE domain containing 1	protein-coding	0.040000	0.592040	-56(GGCCATAAAGGG,-,0.00)
mm_31005.1	chr4	40184838	40185038	+	1	NA	NA	NA	41673	NM_007386	11428	Mm.331547	NM_007386	ENSMUSG00000028405	Aco1	Aco-1|Irebp|Irp1	aconitase 1	protein-coding	0.030000	0.512438	
mm_72625.1	chr8	84653346	84653546	+	1	NA	NA	NA	9406	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.020000	0.522388	-33(CCATATAAAAAC,-,0.00)
mm_133246.1	chr16	77115792	77115992	+	1	NA	NA	NA	101823	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.000000	0.348259	
mm_136804.1	chr17	12378538	12378738	+	1	NA	NA	NA	29	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.000000	0.467662	
mm_43230.1	chr5	129908507	129908707	+	1	NA	NA	NA	67	NM_026916	69034	Mm.211372	NM_026916	ENSMUSG00000095789	Nupr1l	1810010E01Rik|4930579G22Rik|Nupr2	nuclear protein transcriptional regulator 1 like	protein-coding	0.120000	0.696517	
mm_91827.1	chr10	56378869	56379069	-	1	NA	NA	NA	1669	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.040000	0.552239	
mm_145606.1	chr18	61096583	61096783	+	1	NA	NA	NA	-8889	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.045000	0.482587	
mm_27130.1	chr3	32365101	32365301	-	1	NA	NA	NA	-288	NR_027966	67576	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	0.025000	0.532338	
mm_145775.1	chr18	65050890	65051090	+	1	NA	NA	NA	27463	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.010000	0.522388	
mm_130633.1	chr15	100424963	100425163	-	1	NA	NA	NA	1870	NR_040351	432982	Mm.234608	NM_001034883	ENSMUSG00000087444	Gm5475	EG432982	predicted gene 5475	ncRNA	0.015000	0.472637	
mm_103403.1	chr11	75439410	75439610	-	1	NA	NA	NA	-9	NM_008878	18816	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	0.025000	0.621891	
mm_106375.1	chr11	118418886	118419086	-	1	NA	NA	NA	132	NM_001025617	76025	Mm.177551	NM_029502	ENSMUSG00000025575	Cant1	5830420C20Rik|Apy1h|D11Bwg0554e|Entpd8|SCAN-1|Shapy	calcium activated nucleotidase 1	protein-coding	0.120000	0.761194	
mm_161940.1	chr19	3996468	3996668	+	1	NA	NA	NA	3816	NM_011533	109575	Mm.246555	NM_011533	ENSMUSG00000037477	Tbx10	Dc|Tbx13|Tbx7	T-box 10	protein-coding	0.020000	0.587065	
mm_75747.1	chr8	69888134	69888334	-	1	NA	NA	NA	-842	NM_026818	68709	Mm.334584	NM_026818	ENSMUSG00000044006	Cilp2	1110031K21Rik|AA407300|CLIP-2	cartilage intermediate layer protein 2	protein-coding	0.035000	0.592040	
mm_1715.1	chr1	75236684	75236884	+	1	NA	NA	NA	82	NM_001159885	56812	Mm.489660	NM_020266	ENSMUSG00000026203	Dnajb2	2700059H22Rik|Dnajb10|Hsj1|mDj8	DnaJ heat shock protein family (Hsp40) member B2	protein-coding	0.090000	0.696517	
mm_108329.1	chr12	79917453	79917653	+	1	NA	NA	NA	7180	NR_131075	77290	Mm.395042	NR_131073		9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.015000	0.542289	
mm_74990.1	chr8	27168782	27168982	-	1	NA	NA	NA	5764	NM_029423	75767	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.000000	0.452736	
mm_158251.1	chrX	107948338	107948538	-	1	NA	NA	NA	-2	NM_001033252	213450	Mm.300779	NM_001033252	ENSMUSG00000073006	Gm732	-	predicted gene 732	protein-coding	0.005000	0.507463	
mm_154007.1	chr19	53039126	53039326	-	1	NA	NA	NA	-572	NM_133216	170750	Mm.99776	NM_133216	ENSMUSG00000025027	Xpnpep1	D230045I08Rik|sAMP	X-prolyl aminopeptidase (aminopeptidase P) 1, soluble	protein-coding	0.035000	0.527363	
mm_171904.1	chr5	43913061	43913261	+	1	NA	NA	NA	44352	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.030000	0.482587	
mm_107046.1	chr12	15814922	15815122	+	1	NA	NA	NA	1763	NM_144551	217410	Mm.491136	NM_144551	ENSMUSG00000020601	Trib2	AW319517|TRB-2|TRB2	tribbles pseudokinase 2	protein-coding	0.090000	0.587065	
mm_2757.1	chr1	129680902	129681102	+	1	NA	NA	NA	407698	NM_172485	210417	Mm.380518	NM_172485	ENSMUSG00000042581	Thsd7b	1700074E13Rik|B930082A18|D130067I03Rik	thrombospondin, type I, domain containing 7B	protein-coding	0.000000	0.412935	-32(GCTTTTAAATAC,+,0.00)
mm_54951.1	chr6	48681634	48681834	-	1	NA	NA	NA	-2844	NM_001243200	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.000000	0.437811	
mm_164884.1	chr18	60426075	60426275	+	1	NA	NA	NA	50146	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.010000	0.492537	
mm_16809.1	chr2	11160699	11160899	-	1	NA	NA	NA	-11583	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.005000	0.422886	-38(GCTTTTAGAAGA,+,0.00)
mm_14826.1	chr2	147013827	147014027	+	1	NA	NA	NA	867	NM_011917	24128	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	0.020000	0.412935	
mm_82596.1	chr9	21287865	21288065	-	1	NA	NA	NA	4	NM_145416	215194	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	0.110000	0.651741	
mm_145489.1	chr18	60385970	60386170	+	1	NA	NA	NA	10041	NM_001146275	60440	Mm.261140	NM_021792	ENSMUSG00000054072	Iigp1	2900074L10Rik|AI046432|AW111922|Ifgga1|Iigp|Irga6	interferon inducible GTPase 1	protein-coding	0.000000	0.402985	
mm_88075.1	chr10	67979501	67979701	+	1	NA	NA	NA	3	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.080000	0.626866	20(CTGTTTTAAAGA,-,0.00)
mm_38623.1	chr4	142048477	142048677	-	1	NA	NA	NA	30679	NR_131014	78917	Mm.139995	NR_131014	ENSMUSG00000085761	4930455G09Rik	-	RIKEN cDNA 4930455G09 gene	ncRNA	0.020000	0.562189	
mm_163607.1	chr13	49215855	49216055	-	1	NA	NA	NA	71	NM_026738	68480	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.155000	0.766169	
mm_151093.1	chr19	47733559	47733759	+	1	NA	NA	NA	1903	NM_026377	67788	Mm.181610	NM_026377	ENSMUSG00000025066	Sfr1	6330577E15Rik|Meir5	SWI5 dependent recombination repair 1	protein-coding	0.025000	0.407960	
mm_141844.1	chr17	34740168	34740368	-	1	NA	NA	NA	3629	NM_009780	12268	Mm.477109	NM_009780	ENSMUSG00000073418	C4b	C4|Ss	complement component 4B (Chido blood group)	protein-coding	0.005000	0.532338	
mm_54709.1	chr6	39708738	39708938	-	1	NA	NA	NA	16625	NM_139294	109880	Mm.245513	NM_139294	ENSMUSG00000002413	Braf	9930012E13Rik|AA120551|AA387315|AA473386|B-raf|Braf-2|Braf2|C230098H17|C87398|D6Ertd631e	Braf transforming gene	protein-coding	0.005000	0.383085	
mm_39086.1	chr4	154636229	154636429	-	1	NA	NA	NA	38	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	0.065000	0.592040	
mm_15805.1	chr2	164486487	164486687	+	1	NA	NA	NA	132	NM_026797	52840	Mm.256927	NM_026797	ENSMUSG00000017734	Dbndd2	1110017A21Rik|2900022J10Rik|AU041050|AW048677|D2Bwg0891e|Nkip|R74724	dysbindin (dystrobrevin binding protein 1) domain containing 2	protein-coding	0.130000	0.800995	
mm_51621.1	chr6	85431890	85432090	+	1	NA	NA	NA	14	NM_144918	232187	Mm.219946	NM_144918	ENSMUSG00000033706	Smyd5	AW536703|NN8-4AG|Rai15|Rrg1	SET and MYND domain containing 5	protein-coding	0.090000	0.676617	
mm_26897.1	chr3	19264867	19265067	-	1	NA	NA	NA	41	NM_008802	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.010000	0.557214	
mm_53982.1	chr6	6862733	6862933	-	1	NA	NA	NA	-501	NM_010057	13396	Mm.439763	NM_010057	ENSMUSG00000029754	Dlx6	-	distal-less homeobox 6	protein-coding	0.070000	0.626866	
mm_137972.1	chr17	33557098	33557298	+	1	NA	NA	NA	1491	NM_053214	17916	Mm.42019	NM_053214	ENSMUSG00000024300	Myo1f	C330006B10Rik	myosin IF	protein-coding	0.000000	0.482587	
mm_73949.1	chr8	120145299	120145499	+	1	NA	NA	NA	470	NM_001163760	234797	Mm.101958	NM_172286	ENSMUSG00000031824	6430548M08Rik	AW049007|Kiaa0513|mKIAA0513	RIKEN cDNA 6430548M08 gene	protein-coding	0.020000	0.597015	
mm_169732.1	chr15	82047480	82047680	-	1	NA	NA	NA	18	NM_011482	20826	Mm.299312	NM_011482	ENSMUSG00000063480	Nhp2l1	FA-1|Fta1|Snu13|Ssfa1	NHP2 non-histone chromosome protein 2-like 1 (S. cerevisiae)	protein-coding	0.110000	0.616915	
mm_4602.1	chr1	178405989	178406189	+	1	NA	NA	NA	208	NM_026626	68226	Mm.252132	NM_026626	ENSMUSG00000026495	Efcab2	1700073K01Rik|D830011E08Rik	EF-hand calcium binding domain 2	protein-coding	0.100000	0.721393	
mm_144944.1	chr18	37768316	37768516	+	1	NA	NA	NA	2836	NM_033595	93724	Mm.247203	NM_033595	ENSMUSG00000102428	Pcdhga12	Pcdh13|pc2c	protocadherin gamma subfamily A, 12	protein-coding	0.070000	0.537313	
mm_96483.1	chr11	67684524	67684724	+	1	NA	NA	NA	-10702	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.010000	0.472637	63(TCCTCTAAATGC,-,0.00)
mm_141257.1	chr17	27597086	27597286	-	1	NA	NA	NA	25778	NM_001291046	56409	Mm.144699	NM_019837	ENSMUSG00000024213	Nudt3	1110011B09Rik|AA960325|Dipp|Dipp1	nudix (nucleotide diphosphate linked moiety X)-type motif 3	protein-coding	0.055000	0.592040	
mm_17443.1	chr2	28466309	28466509	-	1	NA	NA	NA	-85	NM_027040	69327	Mm.46470	NM_027040	ENSMUSG00000026831	1700007K13Rik	Rbest47	RIKEN cDNA 1700007K13 gene	protein-coding	0.040000	0.532338	
mm_45170.1	chr5	51495634	51495834	-	1	NA	NA	NA	58187	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.010000	0.457711	
mm_138567.1	chr17	35379493	35379693	+	1	NA	NA	NA	-24	NM_001143689	15015	Mm.464284	NM_001143689	ENSMUSG00000035929	H2-Q4	H-2Q4|H2-Gs10|Qa-4|Qa4|Qat-4|Qb-1|Qb1	histocompatibility 2, Q region locus 4	protein-coding	0.050000	0.582090	
mm_172951.1	chr9	86695720	86695920	-	1	NA	NA	NA	94	NM_008615	17436	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding	0.180000	0.830846	
mm_117350.1	chr13	69738865	69739065	-	1	NA	NA	NA	932	NM_001145162	76980	Mm.23960	NM_001145162	ENSMUSG00000052981	Ube2ql1	3110006E14Rik	ubiquitin-conjugating enzyme E2Q family-like 1	protein-coding	0.165000	0.825871	
mm_96150.1	chr11	61142392	61142592	+	1	NA	NA	NA	1657	NM_021349	57916	Mm.265915	NM_021349	ENSMUSG00000010142	Tnfrsf13b	1200009E08Rik|Taci	tumor necrosis factor receptor superfamily, member 13b	protein-coding	0.010000	0.482587	
mm_25197.1	chr3	103774077	103774277	+	1	NA	NA	NA	17098	NM_001301306	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.045000	0.507463	-36(CCGTTTTAAAGC,-,0.00)
mm_86890.1	chr10	22299533	22299733	+	1	NA	NA	NA	-7087	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.000000	0.353234	
mm_45807.1	chr5	87591492	87591692	-	1	NA	NA	NA	19	NM_023135	20860	Mm.89655	NM_023135	ENSMUSG00000029272	Sult1e1	EST|ST1E1|Ste	sulfotransferase family 1E, member 1	protein-coding	0.020000	0.437811	
mm_62181.1	chr7	97451337	97451537	+	1	NA	NA	NA	103	NM_001136235	233529	Mm.334033	NM_001010826	ENSMUSG00000051727	Kctd14	AI449310|D7Ertd760e	potassium channel tetramerisation domain containing 14	protein-coding	0.000000	0.427861	
mm_130416.1	chr15	98004574	98004774	-	1	NA	NA	NA	50	NM_031163	12824	Mm.2423	NM_031163	ENSMUSG00000022483	Col2a1	Col2|Col2a|Col2a-1|Del1|Dmm|Lpk|Rgsc856	collagen, type II, alpha 1	protein-coding	0.085000	0.721393	
mm_55894.1	chr6	83536432	83536632	-	1	NA	NA	NA	-281	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.010000	0.552239	25(CAGCTTATAAGG,-,0.00),27(GCTTATAAGGCC,+,0.00),65(TGGCCTAAAAGG,-,0.00)
mm_134693.1	chr16	22561013	22561213	-	1	NA	NA	NA	-28929	NR_106170	102465887		NR_106170	ENSMUSG00000099071	Mir8095	Gm27566|mmu-mir-8095	microRNA 8095	ncRNA	0.005000	0.517413	
mm_79932.1	chr9	65676437	65676637	+	1	NA	NA	NA	-11	NM_010952	18247	Mm.116749	NM_010952	ENSMUSG00000040652	Oaz2	AZ-2|AZ2|Oaz2-ps|Sez15	ornithine decarboxylase antizyme 2	protein-coding	0.095000	0.721393	
mm_151025.1	chr19	46962579	46962779	+	1	NA	NA	NA	-328	NR_028353	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.020000	0.552239	
mm_26517.1	chr3	145893861	145894061	+	1	NA	NA	NA	-30301	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.010000	0.457711	
mm_54471.1	chr6	34910434	34910634	-	1	NA	NA	NA	297	NM_001013366	101240	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.060000	0.636816	
mm_27105.1	chr3	30647661	30647861	-	1	NA	NA	NA	57	NM_027941	71827	Mm.45373	NM_027941	ENSMUSG00000027702	Lrrc34	1700007J06Rik|SPATA34	leucine rich repeat containing 34	protein-coding	0.060000	0.626866	
mm_23421.1	chr3	58591207	58591407	+	1	NA	NA	NA	14649	NM_001040396	69227	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	0.005000	0.442786	
mm_24753.1	chr3	95320903	95321103	+	1	NA	NA	NA	2173	NM_001320492	76893	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.040000	0.557214	
mm_46774.1	chr5	112342930	112343130	-	1	NA	NA	NA	10	NM_027323	70118	Mm.172947	NM_027323	ENSMUSG00000029346	Srrd	2810002G02Rik|Srr1	SRR1 domain containing	protein-coding	0.150000	0.766169	
mm_106434.1	chr11	119408818	119409018	-	1	NA	NA	NA	18446	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.030000	0.616915	
mm_21151.1	chr2	154416365	154416565	-	1	NA	NA	NA	-8381	NM_009228	20648	Mm.1541	NM_009228	ENSMUSG00000027488	Snta1	AW228934|Snt1	syntrophin, acidic 1	protein-coding	0.000000	0.442786	
mm_172345.1	chr7	11310578	11310778	-	1	NA	NA	NA	-87237	NM_001110316	665902	Mm.425380	NM_001110316	ENSMUSG00000070828	Zscan4f	C330039H09Rik	zinc finger and SCAN domain containing 4F	protein-coding	0.000000	0.452736	-38(GGCTATAAAAGG,-,0.00)
mm_30332.1	chr3	151732087	151732287	-	1	NA	NA	NA	17772	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.005000	0.353234	66(TCTTTTAAACTG,+,0.00)
mm_2386.1	chr1	93482497	93482697	+	1	NA	NA	NA	3536	NM_001159719	18000	Mm.428652	NM_010891	ENSMUSG00000026276	Sept2	AW208991|Nedd-5|Nedd5|mKIAA0158	septin 2	protein-coding	0.000000	0.348259	
mm_19051.1	chr2	77259741	77259941	-	1	NA	NA	NA	20751	NM_175465	228071	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.000000	0.383085	
mm_121623.1	chr14	8309640	8309840	-	1	NA	NA	NA	36	NM_183187	268709	Mm.256058	NM_183187	ENSMUSG00000021750	Fam107a	DRR1	family with sequence similarity 107, member A	protein-coding	0.015000	0.537313	
mm_108918.1	chr12	100778960	100779160	+	1	NA	NA	NA	-63	NM_145448	217830	Mm.218590	NM_145448	ENSMUSG00000021185	9030617O03Rik	-	RIKEN cDNA 9030617O03 gene	protein-coding	0.010000	0.577114	
mm_170416.1	chr18	68692138	68692338	+	1	NA	NA	NA	-47162	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0.070000	0.527363	-30(AACTTTAAATGG,-,0.00)
mm_95707.1	chr11	54450586	54450786	+	1	NA	NA	NA	12507	NM_173753	216742	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.005000	0.323383	
mm_27115.1	chr3	30969312	30969512	-	1	NA	NA	NA	3	NM_001165954	241915	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic-like 3 (Drosophila)	protein-coding	0.080000	0.646766	
mm_166150.1	chr5	6104187	6104387	-	1	NA	NA	NA	-354970	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.000000	0.393035	
mm_93850.1	chr10	121987961	121988161	-	1	NA	NA	NA	59254	NM_001242411	117600	Mm.288698	NM_001081037	ENSMUSG00000020121	Srgap1	4930572H05Rik|Arhgap13	SLIT-ROBO Rho GTPase activating protein 1	protein-coding	0.010000	0.442786	57(GCTTTTAAGAGC,+,0.00),58(CTTTTAAGAGCA,+,0.00)
mm_145240.1	chr18	50395213	50395413	+	1	NA	NA	NA	116944	NM_001004061	225497	Mm.329435	NM_001004061	ENSMUSG00000035420	Fam170a	Gm93|Znfd	family with sequence similarity 170, member A	protein-coding	0.000000	0.388060	
mm_22961.1	chr3	32510603	32510803	+	1	NA	NA	NA	111	NM_144519	67778	Mm.285620	NM_144519	ENSMUSG00000027667	Zfp639	6230400O18Rik|ANC-2H01|ZASC1|Znf639	zinc finger protein 639	protein-coding	0.130000	0.815920	
mm_51808.1	chr6	88733504	88733704	+	1	NA	NA	NA	8900	NM_001166251	23945	Mm.272197	NM_011844	ENSMUSG00000033174	Mgll	AA589436|Magl|Mgl	monoglyceride lipase	protein-coding	0.035000	0.601990	
mm_17535.1	chr2	29772068	29772268	-	1	NA	NA	NA	10640	NM_001177392	433416	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	OTTMUSG00000012686	predicted gene 13547	protein-coding	0.000000	0.432836	
mm_68791.1	chr7	123369755	123369955	-	1	NA	NA	NA	60	NM_001122643	70497	Mm.403318	NM_144529	ENSMUSG00000030766	Arhgap17	5730403H17Rik|Nadrin|Nadrin2|Rich1|Wbp15	Rho GTPase activating protein 17	protein-coding	0.125000	0.691542	
mm_107051.1	chr12	16532567	16532767	+	1	NA	NA	NA	57103	NM_015763	14245	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188	lipin 1	protein-coding	0.030000	0.517413	
mm_21613.1	chr2	164256541	164256741	-	1	NA	NA	NA	2	NM_173377	329557	Mm.118769	NM_173377	ENSMUSG00000050383	Svs3b	9530004A22Rik	seminal vesicle secretory protein 3B	protein-coding	0.000000	0.452736	
mm_116530.1	chr13	45832362	45832562	-	1	NA	NA	NA	132529	NM_001199304	20238	Mm.342683	NM_009124	ENSMUSG00000046876	Atxn1	2900016G23Rik|Atx1|C85907|ENSMUSG00000074917|Gm10786|Sca1	ataxin 1	protein-coding	0.020000	0.497512	
mm_50241.1	chr6	42351603	42351803	+	1	NA	NA	NA	1875	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.015000	0.587065	
mm_111562.1	chr12	101221943	101222143	-	1	NA	NA	NA	76434	NR_033653	74947	Mm.488905	NR_033653	ENSMUSG00000092054	Kif4-ps	4930463M05Rik|Kif4b	kinesin family member 4, pseudogene	pseudo	0.030000	0.527363	
mm_158564.1	chrX	150440964	150441164	-	1	NA	NA	NA	73	NM_001164684	382245	Mm.277309	NM_001164683	ENSMUSG00000041353	Tmem29	2700081K05Rik|6330540D07Rik|CXorf44-like	transmembrane protein 29	protein-coding	0.025000	0.522388	
mm_156160.1	chrX	129992860	129993060	+	1	NA	NA	NA	243218	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.000000	0.313433	
mm_74507.1	chr8	8618607	8618807	-	1	NA	NA	NA	42066	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.000000	0.402985	
mm_5814.1	chr1	52658150	52658350	-	1	NA	NA	NA	27545	NM_001142647	227094	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	0.005000	0.522388	
mm_18674.1	chr2	71055423	71055623	-	1	NA	NA	NA	83	NM_145524	228019	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.050000	0.636816	
mm_72562.1	chr8	84084000	84084200	+	1	NA	NA	NA	-1999	NR_030490	735271		NR_030490	ENSMUSG00000076144	Mir709	Mirn709|mir-709|mmu-mir-709	microRNA 709	ncRNA	0.025000	0.567164	
mm_122564.1	chr14	50381206	50381406	-	1	NA	NA	NA	-11452	NM_146666	258660	Mm.377623	NM_146666	ENSMUSG00000047716	Olfr736	MOR106-5	olfactory receptor 736	protein-coding	0.050000	0.512438	
mm_112739.1	chr13	19336465	19336665	+	1	NA	NA	NA	59248	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.447761	
mm_59249.1	chr7	24818670	24818870	+	1	NA	NA	NA	-25	NR_045096	545936	Mm.376228	NR_045096	ENSMUSG00000011350	Gm5893	EG545936|Gm477	predicted gene 5893	pseudo	0.015000	0.582090	
mm_82919.1	chr9	35098952	35099152	-	1	NA	NA	NA	-17676	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.005000	0.502488	
mm_23124.1	chr3	37654323	37654523	+	1	NA	NA	NA	14476	NM_001305442	24063	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty homolog 1 (Drosophila)	protein-coding	0.035000	0.557214	
mm_143917.1	chr17	85615070	85615270	-	1	NA	NA	NA	3226	NR_038084	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.080000	0.696517	-9(GGCTCTTTAAGA,-,0.00),-7(CTCTTTAAGAGC,-,0.00),-6(TCTTTAAGAGCC,+,0.00)
mm_109358.1	chr12	109631827	109632027	+	1	NA	NA	NA	-4085	NR_046302	449562		NR_046302	ENSMUSG00000088294	AF357425	MBII-48	snoRNA AF357425	snoRNA	0.000000	0.398010	
mm_25643.1	chr3	121299232	121299432	+	1	NA	NA	NA	7515	NM_024178	66789	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0.010000	0.497512	
mm_87320.1	chr10	42860562	42860762	+	1	NA	NA	NA	150	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.050000	0.512438	
mm_98352.1	chr11	93568718	93568918	+	1	NA	NA	NA	316948	NM_001013375	217109	Mm.379350	NM_001013375	ENSMUSG00000054079	Utp18	6230425C22Rik|6430513M13|Wdr50	UTP18 small subunit processome component	protein-coding	0.005000	0.338308	
mm_58944.1	chr7	18474753	18474953	+	1	NA	NA	NA	9296	NM_001029893	574429	Mm.296754	NM_001029893	ENSMUSG00000070799	Psg26	EG574429|cea14	pregnancy-specific glycoprotein 26	protein-coding	0.000000	0.442786	
mm_153382.1	chr19	40376721	40376921	-	1	NA	NA	NA	25489	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.035000	0.646766	
mm_153601.1	chr19	43879687	43879887	-	1	NA	NA	NA	-19	NM_001306088	71972	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.090000	0.666667	
mm_139019.1	chr17	46108919	46109119	+	1	NA	NA	NA	-1985	NM_026768	68565	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	0.005000	0.407960	
mm_78468.1	chr9	32617601	32617801	+	1	NA	NA	NA	-76249	NM_008026	14247	Mm.258908	NM_008026	ENSMUSG00000016087	Fli1	EWSR2|Fli-1|SIC-1|Sic1	Friend leukemia integration 1	protein-coding	0.000000	0.467662	
mm_104982.1	chr11	100260929	100261129	-	1	NA	NA	NA	0	NM_010663	16667	Mm.14046	NM_010663	ENSMUSG00000035557	Krt17	K17|Krt1-17	keratin 17	protein-coding	0.050000	0.611940	-36(TGCCCTATAAAG,-,0.00),-34(CCCTATAAAGGA,+,0.00),-34(CCCTATAAAGGA,-,0.00)
mm_11529.1	chr2	32626773	32626973	+	1	NA	NA	NA	1436	NM_001198791	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.000000	0.522388	
mm_71805.1	chr8	68636144	68636344	+	1	NA	NA	NA	98902	NM_001252623	234356	Mm.334569	NM_172753	ENSMUSG00000036356	Csgalnact1	4732435N03Rik|CSGalNAcT-1	chondroitin sulfate N-acetylgalactosaminyltransferase 1	protein-coding	0.005000	0.402985	
mm_65659.1	chr7	28139696	28139896	-	1	NA	NA	NA	10330	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.035000	0.641791	
mm_125546.1	chr15	58432656	58432856	+	1	NA	NA	NA	17288	NM_145959	210998	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.010000	0.393035	
mm_29040.1	chr3	102925140	102925340	-	1	NA	NA	NA	10860	NM_011516	20957	Mm.243849	NM_011516	ENSMUSG00000027855	Sycp1	SCP1	synaptonemal complex protein 1	protein-coding	0.005000	0.268657	
mm_164028.1	chr14	76671563	76671763	+	1	NA	NA	NA	-5905	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.020000	0.482587	
mm_33050.1	chr4	123080944	123081144	+	1	NA	NA	NA	-24117	NM_007559	12164	Mm.439764	NM_007559	ENSMUSG00000002384	Bmp8b	Op3	bone morphogenetic protein 8b	protein-coding	0.035000	0.646766	
mm_44944.1	chr5	36553240	36553440	-	1	NA	NA	NA	-22717	NM_001113364	100855	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.005000	0.552239	
mm_37565.1	chr4	126202660	126202860	-	1	NA	NA	NA	-50	NM_146153	230753	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0.130000	0.651741	
mm_54177.1	chr6	23804506	23804706	-	1	NA	NA	NA	34815	NM_001252106	320405	Mm.259632	NM_153163	ENSMUSG00000017978	Cadps2	A230044C21Rik|Caps-2|Caps2|Cpd2	Ca2+-dependent activator protein for secretion 2	protein-coding	0.000000	0.308458	-6(TTTTATATAGGA,+,0.00)
mm_13841.1	chr2	119476984	119477184	+	1	NA	NA	NA	545	NM_026574	68142	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	0.075000	0.671642	
mm_84242.1	chr9	62343191	62343391	-	1	NA	NA	NA	1948	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.065000	0.606965	
mm_41602.1	chr5	96209654	96209854	+	1	NA	NA	NA	-361	NM_001039084	94061	Mm.295499	NM_053158	ENSMUSG00000029486	Mrpl1	2410002L03Rik|5830418D04Rik|AI462572|L1mt	mitochondrial ribosomal protein L1	protein-coding	0.055000	0.462687	
mm_26172.1	chr3	138286815	138287015	+	1	NA	NA	NA	9270	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.030000	0.512438	
mm_77405.1	chr8	120537578	120537778	-	1	NA	NA	NA	269	NM_001145896	382034	Mm.334856	NM_198671	ENSMUSG00000031822	Gse1	2210013I18Rik|mKIAA0182	genetic suppressor element 1, coiled-coil protein	protein-coding	0.140000	0.746269	
mm_133221.1	chr16	76337154	76337354	+	1	NA	NA	NA	35795	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.025000	0.502488	
mm_135769.1	chr16	56831666	56831866	-	1	NA	NA	NA	-35908	NM_172825	239853	Mm.258979	NM_172825	ENSMUSG00000022755	Adgrg7	9130020O16Rik|Gpr128	adhesion G protein-coupled receptor G7	protein-coding	0.020000	0.437811	
mm_72254.1	chr8	75095781	75095981	+	1	NA	NA	NA	2263	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.010000	0.507463	
mm_61545.1	chr7	79360170	79360370	+	1	NA	NA	NA	26757	NM_020599	19771	Mm.41653	NM_020599	ENSMUSG00000039194	Rlbp1	3110056M11Rik|CRALBP	retinaldehyde binding protein 1	protein-coding	0.035000	0.562189	
mm_120659.1	chr14	70544548	70544748	+	1	NA	NA	NA	-603	NM_180588	72549	Mm.46742	NM_180588	ENSMUSG00000033589	Reep4	2700029E10Rik	receptor accessory protein 4	protein-coding	0.015000	0.467662	
mm_111735.1	chr12	103863181	103863381	-	1	NA	NA	NA	338	NM_001252569	20700	Mm.439692	NM_009243	ENSMUSG00000066366	Serpina1a	Aat-2|Aat2|Dom1|PI1|Spi1-1|Spi1-3	serine (or cysteine) peptidase inhibitor, clade A, member 1A	protein-coding	0.010000	0.527363	
mm_22531.1	chr3	8509414	8509614	+	1	NA	NA	NA	-13	NM_025285	20257	Mm.29580	NM_025285	ENSMUSG00000027500	Stmn2	AI159727|SCG10|Scgn10|Stmb2	stathmin-like 2	protein-coding	0.040000	0.562189	
mm_158368.1	chrX	135009109	135009309	-	1	NA	NA	NA	0	NM_175446	215693	Mm.336238	NM_175446	ENSMUSG00000052676	Zmat1	A230096A06|AW990744|B930008K04Rik	zinc finger, matrin type 1	protein-coding	0.085000	0.616915	
mm_119903.1	chr14	54949342	54949542	+	1	NA	NA	NA	-300	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.030000	0.582090	
mm_906.1	chr1	53851501	53851701	+	1	NA	NA	NA	2177	NR_106149	102465783		NR_106149	ENSMUSG00000098443	Mir7681	Gm27806|mmu-mir-7681	microRNA 7681	ncRNA	0.030000	0.492537	
mm_112236.1	chr12	113482275	113482475	-	1	NA	NA	NA	-7190	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.497512	
mm_168022.1	chrY	90737814	90738014	+	1	NA	NA	NA	17136	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.010000	0.452736	
mm_19559.1	chr2	98667053	98667253	-	1	NA	NA	NA	1199496	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.030000	0.363184	
mm_120667.1	chr14	70552110	70552310	+	1	NA	NA	NA	-1846	NM_021877	15460	Mm.7598	NM_021877	ENSMUSG00000022096	Hr	ALUNC|AU|N|ba|bldy|hr|rh|rh-bmh|rhino	hairless	protein-coding	0.050000	0.716418	
mm_113565.1	chr13	38216382	38216582	+	1	NA	NA	NA	11543	NM_026382	67797	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	0.015000	0.407960	
mm_97820.1	chr11	82963473	82963673	+	1	NA	NA	NA	-2892	NR_045932	76392	Mm.295205	NR_045932	ENSMUSG00000086327	Slfn5os	1700003F17Rik	schlafen 5, opposite strand	ncRNA	0.005000	0.437811	
mm_18456.1	chr2	60963168	60963368	-	1	NA	NA	NA	-64	NM_020296	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.105000	0.746269	
mm_61180.1	chr7	61114994	61115194	+	1	NA	NA	NA	500233	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.010000	0.432836	
mm_143499.1	chr17	71486249	71486449	-	1	NA	NA	NA	-11006	NM_028887	74355	Mm.194450	NM_028887	ENSMUSG00000024054	Smchd1	4931400A14Rik|AW554188|MommeD1|mKIAA0650	SMC hinge domain containing 1	protein-coding	0.010000	0.497512	88(CTCTAGAAAAGC,-,0.00)
mm_96766.1	chr11	69921647	69921847	+	1	NA	NA	NA	211	NM_001166593	276770	Mm.18026	NM_181582	ENSMUSG00000078812	Eif5a	AA410058|D19Wsu54e|Eif4d|Eif5a1|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1	eukaryotic translation initiation factor 5A	protein-coding	0.080000	0.547264	
mm_20055.1	chr2	120314026	120314226	-	1	NA	NA	NA	39	NM_001024145	271844	Mm.24880	NM_001024145	ENSMUSG00000046971	Pla2g4f	4732472I07Rik|Gm647|Pla2zeta	phospholipase A2, group IVF	protein-coding	0.010000	0.597015	
mm_132354.1	chr16	34649805	34650005	+	1	NA	NA	NA	-1306	NM_030744	76378	Mm.23515	NM_030744	ENSMUSG00000022832	Ropn1	1700008N21Rik|ODF6|RHPNAP1|Rppn|ropporin	ropporin, rhophilin associated protein 1	protein-coding	0.035000	0.646766	
mm_172801.1	chr9	117371110	117371310	+	1	NA	NA	NA	-118727	NM_001172126	207181	Mm.326411	NM_178660	ENSMUSG00000039607	Rbms3	6720477E09Rik|8430436O14Rik	RNA binding motif, single stranded interacting protein	protein-coding	0.000000	0.492537	
mm_65779.1	chr7	28766390	28766590	-	1	NA	NA	NA	154	NM_001306222	18036	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	0.060000	0.616915	-47(GGGTATATGAGG,-,0.00)
mm_8557.1	chr1	155232620	155232820	-	1	NA	NA	NA	74017	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.020000	0.542289	55(TACCATTAAAGC,-,0.00)
mm_71176.1	chr8	40674973	40675173	+	1	NA	NA	NA	-4	NM_010086	13526	Mm.67403	NM_010086	ENSMUSG00000046723	Adam24	Dtgn5	a disintegrin and metallopeptidase domain 24 (testase 1)	protein-coding	0.005000	0.378109	-22(TGCTTTAAAAAG,-,0.00),-20(CTTTAAAAAGTG,+,0.00)
mm_48515.1	chr5	142822882	142823082	-	1	NA	NA	NA	-5595	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.045000	0.587065	
mm_26977.1	chr3	25144204	25144404	-	1	NA	NA	NA	-360298	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.115000	0.721393	
mm_102150.1	chr11	53634601	53634801	-	1	NA	NA	NA	1	NM_008355	16163	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	0.010000	0.532338	-33(GTTTATAAAAGC,-,0.00)
mm_82095.1	chr9	123056469	123056669	+	1	NA	NA	NA	21828	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.040000	0.492537	
mm_103111.1	chr11	69981153	69981353	-	1	NA	NA	NA	-18	NM_018740	54351	Mm.13430	NM_018740	ENSMUSG00000018565	Elp5	Derp6|Rai12	elongator acetyltransferase complex subunit 5	protein-coding	0.070000	0.666667	
mm_36499.1	chr4	83324162	83324362	-	1	NA	NA	NA	-73	NM_027238	69863	Mm.5540	NM_025782	ENSMUSG00000038172	Ttc39b	1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585	tetratricopeptide repeat domain 39B	protein-coding	0.100000	0.721393	
mm_130441.1	chr15	98482088	98482288	-	1	NA	NA	NA	495	NM_010679	16770	Mm.5074	NM_010679	ENSMUSG00000022991	Lalba	AW208827|Lyzg	lactalbumin, alpha	protein-coding	0.030000	0.462687	
mm_146710.1	chr18	14682669	14682869	-	1	NA	NA	NA	145	NM_001161369	268996	Mm.31761	NM_009280	ENSMUSG00000037013	Ss18	D130059H17|Ssxt|Syt	SS18, nBAF chromatin remodeling complex subunit	protein-coding	0.135000	0.751244	
mm_103433.1	chr11	75795965	75796165	-	1	NA	NA	NA	-5	NM_007873	13447	Mm.5137	NM_007873	ENSMUSG00000020848	Doc2b	-	double C2, beta	protein-coding	0.160000	0.820896	
mm_84459.1	chr9	66580596	66580796	-	1	NA	NA	NA	12419	NM_144937	235441	Mm.32465	NM_144937	ENSMUSG00000032376	Usp3	AA409661|BC017156	ubiquitin specific peptidase 3	protein-coding	0.000000	0.388060	
mm_41819.1	chr5	103846267	103846467	+	1	NA	NA	NA	64862	NM_178741	246293	Mm.179871	NM_178741	ENSMUSG00000029312	Klhl8	2310001P09Rik|D5Ertd431e	kelch-like 8	protein-coding	0.040000	0.552239	
mm_166606.1	chr6	68512319	68512519	+	1	NA	NA	NA	814755	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.353234	-15(GCTTTTATATAG,+,0.00)
mm_34908.1	chr4	155704712	155704912	+	1	NA	NA	NA	-3	NM_026899	68991	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0.035000	0.487562	
mm_53098.1	chr6	125049825	125050025	+	1	NA	NA	NA	-2	NM_001127340	54137	Mm.347910	NM_016845	ENSMUSG00000072770	Acrbp	OY-TES-1|sp32	proacrosin binding protein	protein-coding	0.065000	0.616915	
mm_2877.1	chr1	131827941	131828141	+	1	NA	NA	NA	29	NM_173865	98396	Mm.389181	NM_173865	ENSMUSG00000013275	Slc41a1	AI573938|B230315F01Rik	solute carrier family 41, member 1	protein-coding	0.055000	0.597015	
mm_94868.1	chr11	24078149	24078349	+	1	NA	NA	NA	193	NM_001159289	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.035000	0.427861	
mm_123885.1	chr14	72709792	72709992	-	1	NA	NA	NA	111	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.125000	0.711443	
mm_142756.1	chr17	48794761	48794961	-	1	NA	NA	NA	-137721	NM_027452	70530	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0.000000	0.522388	
mm_130576.1	chr15	99500037	99500237	-	1	NA	NA	NA	-25407	NM_029236	75284	Mm.32826	NM_029236	ENSMUSG00000037525	Bcdin3d	4930556P03Rik|AV138748	BCDIN3 domain containing	protein-coding	0.020000	0.527363	
mm_73826.1	chr8	117459630	117459830	+	1	NA	NA	NA	465	NR_106046	102465653		NR_106046	ENSMUSG00000098483	Mir7078	Gm27386|mmu-mir-7078	microRNA 7078	ncRNA	0.025000	0.572139	
mm_137546.1	chr17	27556853	27557053	+	1	NA	NA	NA	300	NM_001166477	111241	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1-rs1	ENSMUSG00000041059|Hmgi-rs1	high mobility group AT-hook I, related sequence 1	protein-coding	0.140000	0.776119	
mm_103652.1	chr11	78972987	78973187	-	1	NA	NA	NA	11837	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.015000	0.512438	
mm_120340.1	chr14	63605960	63606160	+	1	NA	NA	NA	-470	NM_173393	219149	Mm.32071	NM_173393	ENSMUSG00000035067	Xkr6	2700008G24Rik|BC024502|Xrg6	X-linked Kx blood group related 6	protein-coding	0.045000	0.606965	
mm_162530.1	chr1	164136146	164136346	+	1	NA	NA	NA	-15589	NM_007976	14067	Mm.12900	NM_007976	ENSMUSG00000026579	F5	AI173222|Cf-5|Cf5	coagulation factor V	protein-coding	0.035000	0.477612	
mm_146453.1	chr18	86394908	86395108	+	1	NA	NA	NA	56	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.045000	0.601990	
mm_131842.1	chr16	22961143	22961343	+	1	NA	NA	NA	10171	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.025000	0.552239	
mm_36614.1	chr4	89294409	89294609	-	1	NA	NA	NA	110	NM_009877	12578	Mm.4733	NM_009877	ENSMUSG00000044303	Cdkn2a	ARF-INK4a|Arf|INK4a-ARF|Ink4a/Arf|MTS1|Pctr1|p16|p16(INK4a)|p16INK4a|p19<ARF>|p19ARF	cyclin-dependent kinase inhibitor 2A	protein-coding	0.090000	0.651741	
mm_121780.1	chr14	19890552	19890752	-	1	NA	NA	NA	51727	NR_105025	52512	Mm.483998	NR_105025		D14Ertd670e	-	DNA segment, Chr 14, ERATO Doi 670, expressed	ncRNA	0.005000	0.378109	
mm_161600.1	chr16	36884862	36885062	+	1	NA	NA	NA	-49	NM_030035	224139	Mm.244815	NM_030035	ENSMUSG00000034243	Golgb1	4930428L02Rik|628101|6330407A06Rik|AU042952|C130074L01Rik|F730017E11Rik|Gm6840|mKIAA4151	golgi autoantigen, golgin subfamily b, macrogolgin 1	protein-coding	0.005000	0.328358	
mm_97881.1	chr11	83225956	83226156	+	1	NA	NA	NA	2480	NR_015519	100043636	Mm.295569	NR_015519	ENSMUSG00000087107	AI662270	AW496474	expressed sequence AI662270	ncRNA	0.005000	0.427861	
mm_127730.1	chr15	103272800	103273000	+	1	NA	NA	NA	-18	NM_019817	56447	Mm.29473	NM_019817	ENSMUSG00000060992	Copz1	5930435A22Rik|AA407760|D4Ertd360e	coatomer protein complex, subunit zeta 1	protein-coding	0.070000	0.631841	-67(GCCTCTTTGAGG,-,0.00)
mm_172032.1	chr6	124712423	124712623	+	1	NA	NA	NA	234	NM_007531	12034	Mm.36241	NM_007531	ENSMUSG00000004264	Phb2	AU044498|BAP|Bap37|Bcap37|REA	prohibitin 2	protein-coding	0.100000	0.696517	
mm_101832.1	chr11	47379310	47379510	-	1	NA	NA	NA	-108	NM_011891	24052	Mm.338890	NM_011891	ENSMUSG00000020354	Sgcd	35kDa|delta-SG	sarcoglycan, delta (dystrophin-associated glycoprotein)	protein-coding	0.040000	0.611940	
mm_69828.1	chr7	141269852	141270052	-	1	NA	NA	NA	-3528	NM_001252600	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.040000	0.577114	
mm_83164.1	chr9	40489582	40489782	-	1	NA	NA	NA	-33918	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.030000	0.517413	
mm_99726.1	chr11	106300677	106300877	+	1	NA	NA	NA	1119	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.025000	0.572139	
mm_34599.1	chr4	150236706	150236906	+	1	NA	NA	NA	-391	NM_023119	13806	Mm.70666	NM_023119	ENSMUSG00000063524	Eno1	0610008I15|AL022784|Eno-1|MBP-1	enolase 1, alpha non-neuron	protein-coding	0.120000	0.711443	
mm_48142.1	chr5	137150334	137150534	-	1	NA	NA	NA	-34227	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.487562	
mm_94529.1	chr11	9117908	9118108	+	1	NA	NA	NA	0	NM_001159401	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.020000	0.522388	
mm_64161.1	chr7	141360142	141360342	+	1	NA	NA	NA	4868	NR_033532	320871	Mm.475463	NM_177280	ENSMUSG00000086844	B230206H07Rik	-	RIKEN cDNA B230206H07 gene	ncRNA	0.020000	0.656716	
mm_80267.1	chr9	72958731	72958931	+	1	NA	NA	NA	46	NM_001163725	67685	Mm.31817	NM_026314	ENSMUSG00000089865	Dyx1c1	1700010I24Rik|Dnaaf4|EKN1|b2b811.1Clo|b2b811Clo	dyslexia susceptibility 1 candidate 1	protein-coding	0.075000	0.641791	
mm_59585.1	chr7	28129537	28129737	+	1	NA	NA	NA	171	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.000000	0.532338	
mm_60877.1	chr7	46098734	46098934	+	1	NA	NA	NA	1403	NM_010602	16514	Mm.333863	NM_010602	ENSMUSG00000096146	Kcnj11	Kir6.2|mBIR	potassium inwardly rectifying channel, subfamily J, member 11	protein-coding	0.055000	0.601990	
mm_95883.1	chr11	58103899	58104099	+	1	NA	NA	NA	-154	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.125000	0.696517	
mm_164858.1	chr18	52906304	52906504	+	1	NA	NA	NA	-3757	NR_035420	100316749		NR_035420	ENSMUSG00000080573	Mir467f	Mirn467f|mmu-mir-467f	microRNA 467f	ncRNA	0.000000	0.412935	
mm_74737.1	chr8	18741454	18741654	-	1	NA	NA	NA	8	NM_007426	11601	Mm.439874	NM_007426	ENSMUSG00000031465	Angpt2	Agpt2|Ang-2|Ang2	angiopoietin 2	protein-coding	0.025000	0.537313	
mm_159035.1	chr1	177991383	177991583	+	1	NA	NA	NA	48	NM_001034899	545391	Mm.442974	NM_001034899	ENSMUSG00000091476	Gm16432	EG545391|EG666250	predicted gene 16432	protein-coding	0.060000	0.636816	
mm_172665.1	chr8	43180137	43180337	-	1	NA	NA	NA	-2885	NM_001160412	622117	Mm.390031	NM_001160412	ENSMUSG00000091490	Triml2	EG622117|Tu4	tripartite motif family-like 2	protein-coding	0.005000	0.452736	
mm_155364.1	chrX	71079843	71080043	+	1	NA	NA	NA	29687	NM_001081354	333639	Mm.371730	NM_001081354	ENSMUSG00000059401	Mamld1	G630014P10Rik	mastermind-like domain containing 1	protein-coding	0.000000	0.288557	
mm_84286.1	chr9	62987796	62987996	-	1	NA	NA	NA	-7017	NM_019663	56469	Mm.431253	NM_019663	ENSMUSG00000032405	Pias1	2900068C24Rik|Ddxbp1|GBP	protein inhibitor of activated STAT 1	protein-coding	0.010000	0.442786	
mm_41646.1	chr5	98186078	98186278	+	1	NA	NA	NA	5309	NM_029947	77630	Mm.332511	NM_029947	ENSMUSG00000035456	Prdm8	4930565F05Rik|PFM5	PR domain containing 8	protein-coding	0.120000	0.741294	
mm_78910.1	chr9	44980447	44980647	+	1	NA	NA	NA	-116	NM_009850	12502	Mm.335106	NM_009850	ENSMUSG00000002033	Cd3g	Ctg-3|Ctg3|T3g	CD3 antigen, gamma polypeptide	protein-coding	0.015000	0.522388	
mm_105062.1	chr11	100715933	100716133	-	1	NA	NA	NA	2183	NM_029307	75482	Mm.46175	NM_029307	ENSMUSG00000017832	Hspb9	1700007H20Rik	heat shock protein, alpha-crystallin-related, B9	protein-coding	0.035000	0.626866	
mm_116077.1	chr13	28364218	28364418	-	1	NA	NA	NA	221834	NM_023746	28078	Mm.155058	NM_023746	ENSMUSG00000017064	Prl5a1	1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl	prolactin family 5, subfamily a, member 1	protein-coding	0.000000	0.447761	
mm_140545.1	chr17	6827762	6827962	-	1	NA	NA	NA	-45082	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.080000	0.577114	-97(GCTTTTATACTG,+,0.00)
mm_25699.1	chr3	122294055	122294255	+	1	NA	NA	NA	-452	NR_030439	791077		NR_030439	ENSMUSG00000076456	Mir760	Mirn760|mir-760|mmu-mir-760	microRNA 760	ncRNA	0.065000	0.597015	
mm_159738.1	chr5	66097965	66098165	-	1	NA	NA	NA	114	NM_139065	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.005000	0.442786	
mm_30942.1	chr4	33045081	33045281	+	1	NA	NA	NA	13756	NM_019586	56228	Mm.259095	NM_019586	ENSMUSG00000028277	Ube2j1	0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p	ubiquitin-conjugating enzyme E2J 1	protein-coding	0.020000	0.427861	32(CTTTTAATACAC,+,0.00)
mm_32806.1	chr4	117124439	117124639	+	1	NA	NA	NA	1186	NR_024078	78611	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0.010000	0.517413	
mm_130952.1	chr15	103255294	103255494	-	1	NA	NA	NA	45	NM_008685	18022	Mm.457989	NM_008685	ENSMUSG00000058794	Nfe2	NF-E2|NF-E2/P45|p45|p45NFE2|p45nf-e2	nuclear factor, erythroid derived 2	protein-coding	0.080000	0.686567	
mm_163663.1	chr13	76803617	76803817	+	1	NA	NA	NA	331751	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0.015000	0.447761	1(CTTTTTAGAACG,+,0.00),43(CAGTTTAAAAAC,-,0.00)
mm_117037.1	chr13	58275549	58275749	-	1	NA	NA	NA	-1461	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.020000	0.492537	
mm_112652.1	chr13	16021583	16021783	+	1	NA	NA	NA	9832	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.010000	0.328358	-30(GACTCTTTAGGG,-,0.00)
mm_96426.1	chr11	67257141	67257341	+	1	NA	NA	NA	19429	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.025000	0.567164	
mm_60384.1	chr7	44473819	44474019	+	1	NA	NA	NA	3572	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.005000	0.427861	
mm_170139.1	chr17	39848241	39848441	+	1	NA	NA	NA	5344	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.115000	0.721393	
mm_88434.1	chr10	77530465	77530665	+	1	NA	NA	NA	217	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.015000	0.517413	
mm_81017.1	chr9	104263133	104263333	+	1	NA	NA	NA	-303	NM_001163026	235567	Mm.217256	NM_001163026	ENSMUSG00000032560	Dnajc13	D030002L11Rik|Gm1124|RME-8|Rme8|mKIAA0678	DnaJ heat shock protein family (Hsp40) member C13	protein-coding	0.065000	0.621891	
mm_99116.1	chr11	100140907	100141107	+	1	NA	NA	NA	2692	NM_001313963	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.045000	0.597015	
mm_2566.1	chr1	118389344	118389544	+	1	NA	NA	NA	386	NM_001293301	76707	Mm.138740	NM_029709	ENSMUSG00000064302	Clasp1	1700030C23Rik|5730583A19Rik|B130045P17Rik|CLASP1alpha	CLIP associating protein 1	protein-coding	0.065000	0.507463	
mm_151796.1	chr19	5415691	5415891	-	1	NA	NA	NA	8976	NR_027938	74931	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	0.055000	0.527363	
mm_112666.1	chr13	16027110	16027310	+	1	NA	NA	NA	15359	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.323383	
mm_83708.1	chr9	50728141	50728341	-	1	NA	NA	NA	-257	NM_178118	330938	Mm.82598	NM_178118	ENSMUSG00000032064	Dixdc1	4930563F16Rik|BC048182|Ccd1|Ccd1Aalpha1L|Ccd1Abeta1L|Ccd1BalphaL|Ccd1BbetaL|Ccd1CL|mKIAA1735	DIX domain containing 1	protein-coding	0.095000	0.611940	
mm_26939.1	chr3	20265047	20265247	-	1	NA	NA	NA	10586	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.000000	0.283582	
mm_110089.1	chr12	25094429	25094629	-	1	NA	NA	NA	1563	NM_010496	15902	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.010000	0.368159	75(CTTTTTAAAAAG,+,0.00),75(CTTTTTAAAAAG,-,0.00)
mm_3263.1	chr1	136345018	136345218	+	1	NA	NA	NA	986	NM_001081360	67886	Mm.144143	NM_001081360	ENSMUSG00000041570	Camsap2	1600013L13Rik|4930541M15Rik|Camsap1l1|mKIAA1078	calmodulin regulated spectrin-associated protein family, member 2	protein-coding	0.050000	0.477612	
mm_162372.1	chr1	67212886	67213086	+	1	NA	NA	NA	89959	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.437811	
mm_140104.1	chr17	78508114	78508314	+	1	NA	NA	NA	151	NM_028813	74199	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik	vitrin	protein-coding	0.015000	0.417910	
mm_92390.1	chr10	76596367	76596567	-	1	NA	NA	NA	20819	NM_080845	14317	Mm.36278	NM_080845	ENSMUSG00000001155	Ftcd	-	formiminotransferase cyclodeaminase	protein-coding	0.090000	0.631841	
mm_1700.1	chr1	75147208	75147408	+	1	NA	NA	NA	4150	NM_001305232	227298	Mm.273062	NM_170755	ENSMUSG00000049339	Fam134a	-	family with sequence similarity 134, member A	protein-coding	0.010000	0.487562	
mm_144722.1	chr18	35130545	35130745	+	1	NA	NA	NA	11733	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.005000	0.318408	88(TTTTTAATAGAC,+,0.00)
mm_157940.1	chrX	85775521	85775721	-	1	NA	NA	NA	1198	NM_001294140	14933	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	0.020000	0.442786	
mm_63142.1	chr7	123143654	123143854	+	1	NA	NA	NA	19869	NM_144925	233833	Mm.102305	NM_144925	ENSMUSG00000052707	Tnrc6a	2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6	trinucleotide repeat containing 6a	protein-coding	0.005000	0.328358	
mm_157760.1	chrX	73495084	73495284	-	1	NA	NA	NA	-7902	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.005000	0.522388	
mm_887.1	chr1	52684633	52684833	+	1	NA	NA	NA	42585	NM_178081	98682	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	0.010000	0.482587	
mm_165041.1	chr19	39025746	39025946	+	1	NA	NA	NA	18827	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.005000	0.363184	
mm_48431.1	chr5	140621314	140621514	-	1	NA	NA	NA	14073	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.040000	0.567164	
mm_108216.1	chr12	77057146	77057346	+	1	NA	NA	NA	-94998	NM_001146176	17187	Mm.268548	NM_008558	ENSMUSG00000059436	Max	AA960152|AI875693|bHLHd4|bHLHd5|bHLHd6|bHLHd7|bHLHd8	Max protein	protein-coding	0.010000	0.472637	-33(GCCTCTATAAAA,-,0.00),-31(CTCTATAAAAAG,-,0.00)
mm_106225.1	chr11	117114890	117115090	-	1	NA	NA	NA	-182	NR_029459	74136	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.100000	0.701493	
mm_62502.1	chr7	102019053	102019253	+	1	NA	NA	NA	-998	NM_010531	16068	Mm.422756	NM_010531	ENSMUSG00000070427	Il18bp	IL-18BP|Igifbp|MC54L	interleukin 18 binding protein	protein-coding	0.015000	0.512438	
mm_122951.1	chr14	54967120	54967320	-	1	NA	NA	NA	-613	NM_010856	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.010000	0.472637	
mm_86995.1	chr10	26607995	26608195	+	1	NA	NA	NA	66556	NR_033633	667572	Mm.482728	NR_033633	ENSMUSG00000098179	Gm8709	EG667572	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.010000	0.417910	
mm_98680.1	chr11	96285510	96285710	+	1	NA	NA	NA	-1036	NM_010460	15415	Mm.390366	NM_010460	ENSMUSG00000038721	Hoxb7	AI325018|Hox-2.3	homeobox B7	protein-coding	0.035000	0.592040	
mm_84559.1	chr9	67733660	67733860	-	1	NA	NA	NA	-4183	NR_106101	102465716		NR_106101	ENSMUSG00000098446	Mir7242	Gm27809|mmu-mir-7242	microRNA 7242	ncRNA	0.035000	0.522388	
mm_170805.1	chr2	175737813	175738013	+	1	NA	NA	NA	-29	NM_001256480	100043915	Mm.466613	NM_001256480	ENSMUSG00000078897	Gm4724	-	predicted gene 4724	protein-coding	0.015000	0.497512	
mm_41919.1	chr5	105607260	105607460	+	1	NA	NA	NA	87889	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.040000	0.467662	-96(GGCTATAAGAAC,-,0.00)
mm_154526.1	chrM	13398	13598	-	1	NA	NA	NA	NA	NA									0.015000	0.298507	
mm_121096.1	chr14	99313252	99313452	+	1	NA	NA	NA	14661	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.070000	0.517413	29(TCCTTTAAACCG,+,0.00)
mm_35671.1	chr4	43578478	43578678	-	1	NA	NA	NA	-157	NM_172866	242406	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	0.090000	0.656716	
mm_79391.1	chr9	54863630	54863830	+	1	NA	NA	NA	-25	NM_022655	64602	Mm.208991	NM_022655	ENSMUSG00000032293	Ireb2	D9Ertd85e|Irp2	iron responsive element binding protein 2	protein-coding	0.115000	0.696517	
mm_72501.1	chr8	83740518	83740718	+	1	NA	NA	NA	693	NM_001163029	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.005000	0.412935	
mm_103975.1	chr11	84819361	84819561	-	1	NA	NA	NA	54	NM_145433	217038	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik|ENSMUSG00000054212	mitochondrial rRNA methyltransferase 1	protein-coding	0.055000	0.651741	
mm_62064.1	chr7	92561076	92561276	+	1	NA	NA	NA	27	NM_001162918	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.070000	0.587065	
mm_135695.1	chr16	52442195	52442395	-	1	NA	NA	NA	10786	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.313433	
mm_59896.1	chr7	30307270	30307470	+	1	NA	NA	NA	-1383	NM_198027	233065	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	0.010000	0.487562	
mm_24110.1	chr3	88142624	88142824	+	1	NA	NA	NA	352	NM_001310593	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.140000	0.766169	-29(GCCCCTTTAAGA,-,0.00),-26(CCTTTAAGAACC,+,0.00)
mm_29436.1	chr3	109768741	109768941	-	1	NA	NA	NA	194834	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.005000	0.368159	
mm_134675.1	chr16	22405954	22406154	-	1	NA	NA	NA	33516	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.025000	0.492537	
mm_140529.1	chr17	6746717	6746917	-	1	NA	NA	NA	35963	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.010000	0.502488	
mm_28653.1	chr3	95229395	95229595	-	1	NA	NA	NA	552	NM_001038708	57912	Mm.28189	NM_172395	ENSMUSG00000046722	Cdc42se1	1300002M12Rik|AW558204|Cdcse1|SCIP1|Spec1	CDC42 small effector 1	protein-coding	0.040000	0.587065	
mm_112509.1	chr13	8885816	8886016	+	1	NA	NA	NA	310	NM_145360	319554	Mm.29847	NM_145360	ENSMUSG00000058258	Idi1	4832416K17Rik	isopentenyl-diphosphate delta isomerase	protein-coding	0.065000	0.597015	
mm_111138.1	chr12	81594892	81595092	-	1	NA	NA	NA	16	NM_001347385	69792	Mm.279993	NM_027213	ENSMUSG00000002679	Med6	1500012F11Rik|AU019660|AV213303	mediator complex subunit 6	protein-coding	0.100000	0.557214	8(GCTCTTATAGCG,+,0.00)
mm_88575.1	chr10	79682100	79682300	+	1	NA	NA	NA	5	NM_177613	216150	Mm.21981	NM_177613	ENSMUSG00000020307	Cdc34	AI327276|UBE2R1	cell division cycle 34	protein-coding	0.175000	0.810945	
mm_43145.1	chr5	125454285	125454485	+	1	NA	NA	NA	12817	NM_029752	76809	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	0.020000	0.592040	
mm_121858.1	chr14	20668197	20668397	-	1	NA	NA	NA	57	NM_175132	68760	Mm.35789	NM_175132	ENSMUSG00000039376	Synpo2l	1110054M18Rik|Chap	synaptopodin 2-like	protein-coding	0.020000	0.606965	
mm_114414.1	chr13	64364069	64364269	+	1	NA	NA	NA	6351	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.025000	0.452736	
mm_44732.1	chr5	31093413	31093613	-	1	NA	NA	NA	14	NM_011773	22784	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.095000	0.706468	
mm_46379.1	chr5	103966944	103967144	-	1	NA	NA	NA	10344	NM_198030	243168	Mm.284944	NM_198030	ENSMUSG00000034528	Hsd17b13	AI047820|PAN1B-like|Pan1b	hydroxysteroid (17-beta) dehydrogenase 13	protein-coding	0.035000	0.527363	
mm_142644.1	chr17	47437278	47437478	-	1	NA	NA	NA	-3	NM_029296	75462	Mm.46129	NM_029296	ENSMUSG00000047150	1700001C19Rik	-	RIKEN cDNA 1700001C19 gene	protein-coding	0.035000	0.537313	
mm_54812.1	chr6	42324560	42324760	-	1	NA	NA	NA	-20	NM_029528	76156	Mm.234314	NM_029528	ENSMUSG00000029861	Fam131b	6330503C03Rik|6530406I18Rik|AV277466	family with sequence similarity 131, member B	protein-coding	0.130000	0.805970	
mm_18265.1	chr2	52308435	52308635	-	1	NA	NA	NA	17533	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.010000	0.373134	
mm_143118.1	chr17	57209369	57209569	-	1	NA	NA	NA	7759	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.005000	0.522388	
mm_148526.1	chr19	4510403	4510603	+	1	NA	NA	NA	31	NM_001162946	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.070000	0.646766	
mm_152281.1	chr19	8880743	8880943	-	1	NA	NA	NA	90	NM_001160356	107197	Mm.381181	NM_001160356	ENSMUSG00000071654	Uqcc3	AI462493|Cbp4	ubiquinol-cytochrome c reductase complex assembly factor 3	protein-coding	0.060000	0.601990	
mm_155440.1	chrX	73494725	73494925	+	1	NA	NA	NA	-8261	NM_001310537	320707	Mm.210095	NM_177236	ENSMUSG00000031376	Atp2b3	6430519O13Rik|Pmca3	ATPase, Ca++ transporting, plasma membrane 3	protein-coding	0.015000	0.522388	
mm_19403.1	chr2	91636361	91636561	-	1	NA	NA	NA	-4	NM_010168	14061	Mm.89048	NM_010168	ENSMUSG00000027249	F2	Cf-2|Cf2|FII	coagulation factor II	protein-coding	0.030000	0.567164	
mm_79523.1	chr9	57589392	57589592	+	1	NA	NA	NA	40	NM_027895	71742	Mm.155877	NM_027895	ENSMUSG00000032308	Ulk3	1200015E14Rik	unc-51-like kinase 3	protein-coding	0.115000	0.766169	
mm_93947.1	chr10	127242704	127242904	-	1	NA	NA	NA	20559	NM_008447	16572	Mm.30355	NM_008447	ENSMUSG00000074657	Kif5a	D10Bwg0738e|Khc|Kif5|Kns|mKIAA4086	kinesin family member 5A	protein-coding	0.005000	0.482587	
mm_32565.1	chr4	109676625	109676825	+	1	NA	NA	NA	98	NM_007983	14084	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	0.135000	0.766169	
mm_38428.1	chr4	139291654	139291854	-	1	NA	NA	NA	18946	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.015000	0.303483	
mm_141047.1	chr17	25433516	25433716	-	1	NA	NA	NA	167	NM_021415	58226	Mm.268378	NM_021415	ENSMUSG00000024112	Cacna1h	Cav3.2|MNCb-1209|alpha13.2	calcium channel, voltage-dependent, T type, alpha 1H subunit	protein-coding	0.130000	0.751244	
mm_147784.1	chr18	61628072	61628272	-	1	NA	NA	NA	-11481	NR_045420	545261	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0.015000	0.512438	
mm_170620.1	chr1	96439667	96439867	+	1	NA	NA	NA	222806	NR_040478	75159	Mm.243854	NR_040478	ENSMUSG00000100589	4930533P14Rik	-	RIKEN cDNA 4930533P14 gene	ncRNA	0.015000	0.402985	
mm_21027.1	chr2	152414647	152414847	-	1	NA	NA	NA	297	NM_175126	67917	Mm.391810	NM_175126	ENSMUSG00000074682	Zcchc3	2810406K24Rik	zinc finger, CCHC domain containing 3	protein-coding	0.130000	0.736318	
mm_7805.1	chr1	131526473	131526673	-	1	NA	NA	NA	788	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.110000	0.731343	
mm_172631.1	chr8	20424687	20424887	-	1	NA	NA	NA	27	NR_028428	381598	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	0.095000	0.681592	
mm_8532.1	chr1	155051203	155051403	-	1	NA	NA	NA	48333	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.015000	0.507463	
mm_168182.1	chr10	59381922	59382122	+	1	NA	NA	NA	-21663	NM_023530	69836	Mm.30268	NM_023530	ENSMUSG00000009646	Pla2g12b	2010002E04Rik|Fksg71|Pla2g13|hlb218	phospholipase A2, group XIIB	protein-coding	0.040000	0.492537	-32(CTCTTTAAAAGA,-,0.00),-31(TCTTTAAAAGAG,+,0.00)
mm_46981.1	chr5	115298684	115298884	-	1	NA	NA	NA	2206	NM_019682	56455	Mm.256858	NM_019682	ENSMUSG00000009013	Dynll1	Dlc8|Dnclc1|Pin	dynein light chain LC8-type 1	protein-coding	0.010000	0.442786	
mm_118711.1	chr14	22184397	22184597	+	1	NA	NA	NA	164785	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.343284	-71(CTCTATAAATAC,-,0.00),45(AATTTTAAAAGG,-,0.00)
mm_52641.1	chr6	117178601	117178801	+	1	NA	NA	NA	10166	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.015000	0.467662	
mm_33261.1	chr4	127195147	127195347	+	1	NA	NA	NA	22367	NM_001302081	242667	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	discs, large (Drosophila) homolog-associated protein 3	protein-coding	0.035000	0.626866	
mm_121985.1	chr14	26439126	26439326	-	1	NA	NA	NA	81679	NR_038005	71106	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.005000	0.417910	
mm_136228.1	chr16	90284178	90284378	-	1	NA	NA	NA	225	NM_178923	224432	Mm.439811	NM_178923	ENSMUSG00000022983	Scaf4	AA517739|Sfrs15|Sra4|Srsf15	SR-related CTD-associated factor 4	protein-coding	0.145000	0.776119	
mm_41123.1	chr5	87784462	87784662	+	1	NA	NA	NA	10112	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.000000	0.318408	54(GATTTTTAAAGC,-,0.00)
mm_3289.1	chr1	136677088	136677288	+	1	NA	NA	NA	-6208	NR_045324	100503460	Mm.30630	NR_045324	ENSMUSG00000097113	Gm19705	-	predicted gene, 19705	ncRNA	0.020000	0.517413	
mm_97423.1	chr11	78037845	78038045	+	1	NA	NA	NA	4	NM_008028	14252	Mm.130227	NM_008028	ENSMUSG00000061981	Flot2	AI573412|Esa|reggie-2	flotillin 2	protein-coding	0.120000	0.756219	
mm_89916.1	chr10	111178401	111178601	+	1	NA	NA	NA	13699	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.005000	0.338308	34(CCTTATAAAACT,+,0.00)
mm_80306.1	chr9	74110231	74110431	+	1	NA	NA	NA	-3	NM_001033500	546144	Mm.335289	NM_177908	ENSMUSG00000044976	Wdr72	AW558070|D230040E23	WD repeat domain 72	protein-coding	0.060000	0.701493	
mm_61754.1	chr7	82771225	82771425	+	1	NA	NA	NA	-15681	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.050000	0.666667	
mm_2955.1	chr1	132506153	132506353	+	1	NA	NA	NA	23	NM_029025	74626	Mm.34611	NM_029025	ENSMUSG00000048174	Tmem81	4930429O20Rik|AI465369	transmembrane protein 81	protein-coding	0.025000	0.512438	
mm_106877.1	chr12	8010828	8011028	+	1	NA	NA	NA	33251	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.368159	
mm_48245.1	chr5	137786184	137786384	-	1	NA	NA	NA	417	NM_144913	231803	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0.150000	0.701493	
mm_30597.1	chr4	6380999	6381199	+	1	NA	NA	NA	15419	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.000000	0.407960	-63(GTCTTTAAATGA,-,0.00),57(CCATTTATAGGA,+,0.00)
mm_30902.1	chr4	32353304	32353504	+	1	NA	NA	NA	-64031	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.000000	0.477612	-81(ATCCTTAAAAGC,-,0.00),-54(GAGCCTATAAGC,-,0.00),-52(GCCTATAAGCCC,+,0.00),37(GTCTCTAAAAAG,-,0.00)
mm_124958.1	chr15	12923977	12924177	+	1	NA	NA	NA	99262	NM_001130149	14000	Mm.293142	NM_026799	ENSMUSG00000022191	Drosha	1110013A17Rik|AI874853|Etohi2|Rn3|Rnasen	drosha, ribonuclease type III	protein-coding	0.025000	0.487562	
mm_151196.1	chr19	53533834	53534034	+	1	NA	NA	NA	4616	NM_001085390	240672	Mm.482424	NM_001085390	ENSMUSG00000034765	Dusp5	Gm337	dual specificity phosphatase 5	protein-coding	0.030000	0.582090	
mm_81317.1	chr9	108452409	108452609	+	1	NA	NA	NA	-8009	NM_133744	72454	Mm.46488	NM_133744	ENSMUSG00000049305	Ccdc71	2600016J21Rik	coiled-coil domain containing 71	protein-coding	0.080000	0.676617	
mm_146111.1	chr18	74268094	74268294	+	1	NA	NA	NA	-94	NM_013594	17190	Mm.22522	NM_013594	ENSMUSG00000024561	Mbd1	Cxxc3|PCM1	methyl-CpG binding domain protein 1	protein-coding	0.105000	0.671642	
mm_75548.1	chr8	57529044	57529244	-	1	NA	NA	NA	17301	NM_008252	97165	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.020000	0.467662	
mm_115653.1	chr13	12336459	12336659	-	1	NA	NA	NA	4173	NM_033268	11472	Mm.37638	NM_033268	ENSMUSG00000052374	Actn2	1110008F24Rik	actinin alpha 2	protein-coding	0.000000	0.353234	
mm_52030.1	chr6	96113012	96113212	+	1	NA	NA	NA	-42	NM_182808	320265	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.025000	0.467662	
mm_128279.1	chr15	36879769	36879969	-	1	NA	NA	NA	-82940	NM_001253806	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.010000	0.522388	
mm_171559.1	chr4	147148574	147148774	+	1	NA	NA	NA	-27192	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.010000	0.467662	
mm_172055.1	chr6	128931807	128932007	-	1	NA	NA	NA	-62	NR_106107	102465757		NR_106107	ENSMUSG00000098359	Mir7649	mmu-mir-7649	microRNA 7649	ncRNA	0.000000	0.457711	-36(CTCTCTAAAAGT,-,0.00)
mm_23435.1	chr3	59132207	59132407	+	1	NA	NA	NA	155	NM_001287120	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.005000	0.402985	
mm_71350.1	chr8	45628098	45628298	+	1	NA	NA	NA	447	NM_001310707	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.035000	0.567164	
mm_67348.1	chr7	79827499	79827699	-	1	NA	NA	NA	14753	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.030000	0.517413	
mm_20708.1	chr2	132945989	132946189	-	1	NA	NA	NA	-53	NM_198029	241639	Mm.209784	NM_198029	ENSMUSG00000027356	Fermt1	5830467P10Rik|Kindlin-1	fermitin family member 1	protein-coding	0.015000	0.562189	
mm_67972.1	chr7	100653858	100654058	-	1	NA	NA	NA	3007	NM_001163187	27276	Mm.491216	NM_013746	ENSMUSG00000030701	Plekhb1	AI315628|PHR1|Phret1|evt-1	pleckstrin homology domain containing, family B (evectins) member 1	protein-coding	0.020000	0.522388	
mm_172459.1	chr7	41560751	41560951	-	1	NA	NA	NA	-60961	NM_001033530	101835	Mm.370336	NM_001033530	ENSMUSG00000074166	AW146154	AI451288	expressed sequence AW146154	protein-coding	0.020000	0.562189	
mm_155228.1	chrX	57179687	57179887	+	1	NA	NA	NA	-20850	NR_038463	100502842	Mm.164733	NR_038463	ENSMUSG00000085808	Gm14718	OTTMUSG00000017790	predicted gene 14718	ncRNA	0.005000	0.437811	-34(GCCTATAAAAAG,-,0.00)
mm_51356.1	chr6	72598502	72598702	+	1	NA	NA	NA	-26	NM_026159	67442	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	0.055000	0.587065	-33(AGCTATAAAAGC,-,0.00)
mm_146187.1	chr18	75923555	75923755	+	1	NA	NA	NA	103477	NM_145356	207259	Mm.159332	NM_145356	ENSMUSG00000044646	Zbtb7c	B230208J24Rik|Kr-pok|Zbtb36	zinc finger and BTB domain containing 7C	protein-coding	0.015000	0.527363	
mm_100991.1	chr11	8444999	8445199	-	1	NA	NA	NA	219436	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.010000	0.452736	-33(TGGTATAAAGGC,-,0.00),66(CACTTTATAGGG,-,0.00),68(CTTTATAGGGAG,+,0.00)
mm_61907.1	chr7	90131503	90131703	+	1	NA	NA	NA	1371	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.010000	0.398010	
mm_150439.1	chr19	37602439	37602639	+	1	NA	NA	NA	52121	NM_175353	107371	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0.025000	0.378109	
mm_98931.1	chr11	98355256	98355456	+	1	NA	NA	NA	2927	NR_045477	69338	Mm.398308	NR_045477	ENSMUSG00000085944	1700003D09Rik	-	RIKEN cDNA 1700003D09 gene	ncRNA	0.020000	0.597015	
mm_124151.1	chr14	93195696	93195896	-	1	NA	NA	NA	693092	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.035000	0.407960	
mm_103415.1	chr11	75531804	75532004	-	1	NA	NA	NA	-208	NM_001199283	215113	Mm.11186	NM_173388	ENSMUSG00000038178	Slc43a2	7630402D21Rik|BC042513|Lat4	solute carrier family 43, member 2	protein-coding	0.105000	0.646766	
mm_64322.1	chr7	141949760	141949960	+	1	NA	NA	NA	109	NM_001009929	75770	Mm.274868	NM_029426	ENSMUSG00000053046	Brsk2	4833424K13Rik|SAD-A|SADA	BR serine/threonine kinase 2	protein-coding	0.170000	0.830846	
mm_93195.1	chr10	94298499	94298699	-	1	NA	NA	NA	104	NR_033209	215472	Mm.255656	NM_174999	ENSMUSG00000053420	Gm4792	E130012K09|EG215472	predicted gene 4792	ncRNA	0.005000	0.507463	-43(GGCTCTATAAGC,-,0.00)
mm_162966.1	chr11	9118038	9118238	+	1	NA	NA	NA	35	NM_009477	22271	Mm.4610	NM_009477	ENSMUSG00000020407	Upp1	AI325217|UPase|UdRPase|Up|Upp	uridine phosphorylase 1	protein-coding	0.020000	0.467662	
mm_164834.1	chr18	38961277	38961477	+	1	NA	NA	NA	-31768	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.005000	0.437811	
mm_27606.1	chr3	59153550	59153750	-	1	NA	NA	NA	-22	NR_045641	320463	Mm.484506	NR_045641	ENSMUSG00000036381	F630111L10Rik	-	RIKEN cDNA F630111L10 gene	ncRNA	0.015000	0.522388	
mm_85655.1	chr9	107664104	107664304	-	1	NA	NA	NA	3195	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.005000	0.442786	60(GCTTATATATGA,+,0.00)
mm_27114.1	chr3	30955131	30955331	-	1	NA	NA	NA	14184	NM_001165954	241915	Mm.233173	NM_153421	ENSMUSG00000037652	Phc3	E030046K01Rik|Edr3|Hph3	polyhomeotic-like 3 (Drosophila)	protein-coding	0.010000	0.447761	
mm_77794.1	chr9	3029283	3029483	+	1	NA	NA	NA	9360	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.015000	0.348259	
mm_73405.1	chr8	105932005	105932205	+	1	NA	NA	NA	1757	NM_023182	109660	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.020000	0.497512	
mm_6405.1	chr1	72863121	72863321	-	1	NA	NA	NA	11644	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.030000	0.597015	
mm_159356.1	chr3	83960585	83960785	-	1	NA	NA	NA	79476	NM_172681	229473	Mm.28838	NM_172681	ENSMUSG00000033767	D930015E06Rik	Kiaa0922|mKIAA0922	RIKEN cDNA D930015E06 gene	protein-coding	0.020000	0.437811	
mm_140815.1	chr17	22867030	22867230	-	1	NA	NA	NA	4	NM_177358	240041	Mm.328828	NM_177358	ENSMUSG00000059142	Zfp945	A630033E08Rik|C730040L01Rik	zinc finger protein 945	protein-coding	0.050000	0.527363	-99(GGGTTTAAAGGA,-,0.00)
mm_167607.1	chr9	54558696	54558896	-	1	NA	NA	NA	1283	NM_019686	56506	Mm.42192	NM_019686	ENSMUSG00000037493	Cib2	2810434I23Rik|AI449053	calcium and integrin binding family member 2	protein-coding	0.035000	0.601990	
mm_123128.1	chr14	56234553	56234753	-	1	NA	NA	NA	4	NM_010371	14940	Mm.14465	NM_010371	ENSMUSG00000079186	Gzmc	AI323531|B10|CCP2|Ctla-5|Ctla5	granzyme C	protein-coding	0.005000	0.512438	
mm_99806.1	chr11	108062250	108062450	+	1	NA	NA	NA	65502	NR_106082	102465705		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0.020000	0.477612	
mm_74085.1	chr8	122550327	122550527	+	1	NA	NA	NA	902	NM_001037298	234839	Mm.37324	NM_001037298	ENSMUSG00000014444	Piezo1	9630020g22|Fam38a|mKIAA0233	piezo-type mechanosensitive ion channel component 1	protein-coding	0.020000	0.552239	
mm_7535.1	chr1	124423428	124423628	-	1	NA	NA	NA	-377969	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.442786	
mm_59109.1	chr7	19815786	19815986	+	1	NA	NA	NA	6869	NM_033601	12051	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.025000	0.522388	
mm_32250.1	chr4	102570344	102570544	+	1	NA	NA	NA	384	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.015000	0.522388	
mm_144179.1	chr18	6765096	6765296	+	1	NA	NA	NA	29	NM_001278447	19330	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.080000	0.661692	
mm_154892.1	chrX	20848471	20848671	+	1	NA	NA	NA	28	NM_001159645	11836	Mm.220946	NM_009703	ENSMUSG00000001127	Araf	1200013E08Rik|A-Raf|AW495444|Araf1	Araf proto-oncogene, serine/threonine kinase	protein-coding	0.055000	0.587065	
mm_108444.1	chr12	82422935	82423135	+	1	NA	NA	NA	111686	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.005000	0.477612	-12(GGCCAGTAAAGG,-,0.00)
mm_159661.1	chr4	150281949	150282149	+	1	NA	NA	NA	133	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.120000	0.746269	
mm_156409.1	chrX	140506021	140506221	+	1	NA	NA	NA	36547	NR_122039	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.005000	0.522388	
mm_65776.1	chr7	28766199	28766399	-	1	NA	NA	NA	345	NM_001306222	18036	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	0.065000	0.597015	
mm_133128.1	chr16	65818556	65818756	+	1	NA	NA	NA	3023	NM_028572	73569	Mm.25670	NM_028572	ENSMUSG00000091243	Vgll3	1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2	vestigial like family member 3	protein-coding	0.000000	0.328358	53(GCATATAAATGC,-,0.00)
mm_75481.1	chr8	48615547	48615747	-	1	NA	NA	NA	59043	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.005000	0.383085	
mm_24334.1	chr3	89662436	89662636	+	1	NA	NA	NA	-52486	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.020000	0.532338	
mm_41527.1	chr5	92602993	92603193	+	1	NA	NA	NA	42	NM_175096	52331	Mm.21965	NM_175096	ENSMUSG00000047963	Stbd1	D530019K15Rik|D5Ertd593e	starch binding domain 1	protein-coding	0.065000	0.691542	-80(AACCTTAAAAGG,-,0.00),-78(CCTTAAAAGGAT,+,0.00)
mm_44948.1	chr5	36581730	36581930	-	1	NA	NA	NA	567	NM_133910	100855	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.085000	0.701493	
mm_128885.1	chr15	73154537	73154737	-	1	NA	NA	NA	30310	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.030000	0.567164	
mm_91614.1	chr10	41519015	41519215	-	1	NA	NA	NA	-385	NM_016898	53599	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.105000	0.646766	
mm_74093.1	chr8	122569084	122569284	+	1	NA	NA	NA	1169	NM_026014	67177	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0.020000	0.626866	
mm_2589.1	chr1	118852397	118852597	+	1	NA	NA	NA	-101723	NR_105764	102465176		NR_105764	ENSMUSG00000098273	Mir6346	Gm27829|mmu-mir-6346	microRNA 6346	ncRNA	0.005000	0.522388	
mm_90248.1	chr10	121510238	121510438	+	1	NA	NA	NA	-34088	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.040000	0.572139	
mm_29052.1	chr3	103737856	103738056	-	1	NA	NA	NA	45	NM_133859	99543	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	0.030000	0.631841	
mm_59587.1	chr7	28131396	28131596	+	1	NA	NA	NA	2030	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.020000	0.592040	
mm_171712.1	chr4	79327664	79327864	+	1	NA	NA	NA	733717	NR_131142	623726		NR_131142		A430085M09Rik	EG623726	RIKEN cDNA A430085M09 gene	ncRNA	0.065000	0.567164	
mm_22213.1	chr2	174286062	174286262	-	1	NA	NA	NA	1842	NM_022000	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.070000	0.601990	
mm_118812.1	chr14	25462405	25462605	+	1	NA	NA	NA	3320	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.000000	0.452736	
mm_10893.1	chr2	25263825	25264025	+	1	NA	NA	NA	1327	NM_175286	97031	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0.010000	0.611940	
mm_47840.1	chr5	134314392	134314592	-	1	NA	NA	NA	268	NM_001080746	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.120000	0.786070	
mm_6608.1	chr1	75479014	75479214	-	1	NA	NA	NA	357	NM_001001565	74241	Mm.260577	NM_001001565	ENSMUSG00000032997	Chpf	1700028N03Rik|AI414328|D1Bwg1363e	chondroitin polymerizing factor	protein-coding	0.125000	0.781095	
mm_161647.1	chr17	5990049	5990249	+	1	NA	NA	NA	14563	NM_011523	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.010000	0.512438	
mm_74216.1	chr8	123979199	123979399	+	1	NA	NA	NA	3823	NM_019552	56199	Mm.274243	NM_019552	ENSMUSG00000031974	Abcb10	Abc-me|Abcb12	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding	0.010000	0.507463	
mm_113692.1	chr13	43122728	43122928	+	1	NA	NA	NA	-11	NM_001005748	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.025000	0.621891	
mm_103489.1	chr11	76528017	76528217	-	1	NA	NA	NA	-18698	NM_198018	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.010000	0.427861	
mm_159339.1	chr3	57692544	57692744	-	1	NA	NA	NA	-107	NM_001033349	242037	Mm.291091	NM_001033349	ENSMUSG00000074591	Ankub1	Gm410	ankrin repeat and ubiquitin domain containing 1	protein-coding	0.000000	0.422886	
mm_130654.1	chr15	100636975	100637175	-	1	NA	NA	NA	-135	NM_001033872	207818	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.110000	0.721393	
mm_106047.1	chr11	116080169	116080369	-	1	NA	NA	NA	-2308	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.025000	0.631841	
mm_151808.1	chr19	5457391	5457591	-	1	NA	NA	NA	72	NM_198616	240514	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	0.090000	0.721393	
mm_84881.1	chr9	79718711	79718911	-	1	NA	NA	NA	-89	NM_001290308	12816	Mm.3819	NM_007730	ENSMUSG00000032332	Col12a1	-	collagen, type XII, alpha 1	protein-coding	0.075000	0.646766	
mm_85135.1	chr9	95753826	95754026	-	1	NA	NA	NA	-3568	NM_011643	22063	Mm.149633	NM_011643	ENSMUSG00000032839	Trpc1	Mtrp1|Trp1|Trrp1	transient receptor potential cation channel, subfamily C, member 1	protein-coding	0.000000	0.273632	
mm_70445.1	chr8	11728024	11728224	+	1	NA	NA	NA	19	NM_001113517	54126	Mm.244068	NM_017402	ENSMUSG00000031511	Arhgef7	Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR	Rho guanine nucleotide exchange factor (GEF7)	protein-coding	0.185000	0.810945	
mm_135207.1	chr16	36610711	36610911	-	1	NA	NA	NA	-48677	NM_013803	12374	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.000000	0.323383	-80(GCATTAAAAGTC,+,0.00)
mm_95377.1	chr11	49092853	49093053	+	1	NA	NA	NA	5936	NM_008330	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.005000	0.487562	
mm_45103.1	chr5	44782387	44782587	-	1	NA	NA	NA	17259	NM_001347349	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0.005000	0.437811	
mm_106710.1	chr12	3806940	3807140	+	1	NA	NA	NA	60	NM_007872	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.180000	0.830846	
mm_71115.1	chr8	36094594	36094794	+	1	NA	NA	NA	-134	NM_172911	244418	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.130000	0.786070	
mm_95940.1	chr11	58382742	58382942	+	1	NA	NA	NA	2196	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.010000	0.517413	
mm_73550.1	chr8	108956610	108956810	+	1	NA	NA	NA	19850	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.075000	0.597015	
mm_22349.1	chr2	180920806	180921006	-	1	NA	NA	NA	30	NM_173761	228994	Mm.30205	NM_173761	ENSMUSG00000038848	Ythdf1	2210410K23Rik|8030473O16	YTH domain family 1	protein-coding	0.170000	0.761194	
mm_6246.1	chr1	67077732	67077932	-	1	NA	NA	NA	-38960	NM_021295	14768	Mm.20522	NM_021295	ENSMUSG00000026000	Lancl1	AW124738|Gpr69|Gpr69a|p40	LanC (bacterial lantibiotic synthetase component C)-like 1	protein-coding	0.010000	0.452736	
mm_15163.1	chr2	154010429	154010629	+	1	NA	NA	NA	2253	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.015000	0.462687	
mm_110126.1	chr12	26444134	26444334	-	1	NA	NA	NA	12218	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.010000	0.407960	
mm_151985.1	chr19	5845378	5845578	-	1	NA	NA	NA	0	NR_131212	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.030000	0.517413	-34(GAGTATAAAAGC,-,0.00)
mm_30721.1	chr4	13743266	13743466	+	1	NA	NA	NA	64	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.110000	0.681592	
mm_57133.1	chr6	122604295	122604495	-	1	NA	NA	NA	-1951	NM_001134391	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.000000	0.412935	89(TTCTATAAAAGT,-,0.00)
mm_116145.1	chr13	29855553	29855753	-	1	NA	NA	NA	20	NR_131896	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0.055000	0.482587	
mm_125855.1	chr15	74995294	74995494	+	1	NA	NA	NA	2637	NM_001271417	110454	Mm.425949	NM_010738	ENSMUSG00000075602	Ly6a	Ly-6A.2|Ly-6A/E|Ly-6E.1|Sca-1|Sca1|TAP	lymphocyte antigen 6 complex, locus A	protein-coding	0.005000	0.477612	
mm_137651.1	chr17	28558249	28558449	+	1	NA	NA	NA	152	NR_105935	102465585		NR_105935	ENSMUSG00000099152	Mir6969	Gm27305|mmu-mir-6969	microRNA 6969	ncRNA	0.035000	0.572139	
mm_162019.1	chr19	45659860	45660060	-	1	NA	NA	NA	233	NM_013907	30838	Mm.254739	NM_013907	ENSMUSG00000040913	Fbxw4	Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn	F-box and WD-40 domain protein 4	protein-coding	0.145000	0.781095	
mm_159285.1	chr2	169883370	169883570	+	1	NA	NA	NA	79717	NR_131974	446211	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0.010000	0.477612	
mm_100528.1	chr11	120598530	120598730	+	1	NA	NA	NA	98	NM_001038230	66156	Mm.21645	NM_025389	ENSMUSG00000025135	Anapc11	1110011I19Rik|R75218	anaphase promoting complex subunit 11	protein-coding	0.150000	0.736318	
mm_109158.1	chr12	108179463	108179663	+	1	NA	NA	NA	-175	NM_009832	12454	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	0.095000	0.636816	
mm_84616.1	chr9	70484707	70484907	-	1	NA	NA	NA	18918	NM_033604	93836	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	0.005000	0.412935	
mm_23192.1	chr3	40981386	40981586	+	1	NA	NA	NA	30855	NM_001040399	214048	Mm.46782	NM_027663	ENSMUSG00000025762	Larp1b	1700108L22Rik|4933421B21Rik|AA690246|Larp2	La ribonucleoprotein domain family, member 1B	protein-coding	0.005000	0.283582	
mm_91839.1	chr10	57522236	57522436	-	1	NA	NA	NA	10193	NM_019760	56442	Mm.29344	NM_019760	ENSMUSG00000019877	Serinc1	1500011D18Rik|AI315070|AIGP-2|TMS-2|Tde1l|Tde2|Tms2|mKIAA1253	serine incorporator 1	protein-coding	0.000000	0.333333	
mm_85318.1	chr9	101251376	101251576	-	1	NA	NA	NA	356	NM_001161362	235542	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0.130000	0.800995	
mm_53868.1	chr6	149329297	149329497	+	1	NA	NA	NA	19983	NM_001289662	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.005000	0.388060	
mm_130880.1	chr15	102246375	102246575	-	1	NA	NA	NA	25	NM_001042727	19411	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.030000	0.601990	
mm_94432.1	chr11	6291998	6292198	+	1	NA	NA	NA	-460	NM_001252288	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.120000	0.731343	
mm_26697.1	chr3	157536452	157536652	+	1	NA	NA	NA	2155	NM_017381	53861	Mm.259036	NM_017381	ENSMUSG00000028180	Zranb2	AI227013|Zfp265|Zis|Znf265	zinc finger, RAN-binding domain containing 2	protein-coding	0.015000	0.422886	
mm_113387.1	chr13	33039808	33040008	+	1	NA	NA	NA	12494	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	0.010000	0.537313	45(CTCCATAAAGGC,-,0.00)
mm_149430.1	chr19	11469386	11469586	+	1	NA	NA	NA	118	NM_028595	73656	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.015000	0.537313	
mm_124275.1	chr14	103033397	103033597	-	1	NA	NA	NA	306	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.030000	0.497512	
mm_165975.1	chr4	102368053	102368253	+	1	NA	NA	NA	113214	NM_019840	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.035000	0.442786	
mm_166839.1	chr7	19307321	19307521	-	1	NA	NA	NA	2624	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.060000	0.582090	
mm_26838.1	chr3	14384339	14384539	-	1	NA	NA	NA	21322	NR_033591	622229	Mm.486084	NR_033591		Gm6300	EG622229	solute carrier family 7 (cationic amino acid transporter, y+ system), member pseudogene	pseudo	0.015000	0.462687	
mm_59627.1	chr7	28155116	28155316	+	1	NA	NA	NA	-14532	NM_007991	14113	Mm.4595	NM_007991	ENSMUSG00000046865	Fbl	AL022665|FIB|FLRN|RNU3IP1	fibrillarin	protein-coding	0.030000	0.587065	
mm_11159.1	chr2	28552087	28552287	+	1	NA	NA	NA	11216	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.030000	0.517413	
mm_64733.1	chr7	4724283	4724483	-	1	NA	NA	NA	699	NM_001142792	330460	Mm.361851	NM_177887	ENSMUSG00000046456	Tmem150b	A630041N19|Tmem224	transmembrane protein 150B	protein-coding	0.005000	0.462687	
mm_150919.1	chr19	46082971	46083171	+	1	NA	NA	NA	7224	NM_001039351	70769	Mm.402190	NM_053086	ENSMUSG00000015176	Nolc1	NOPP130|NOPP140|P130	nucleolar and coiled-body phosphoprotein 1	protein-coding	0.010000	0.587065	
mm_63604.1	chr7	128148402	128148602	+	1	NA	NA	NA	18934	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.025000	0.537313	
mm_69458.1	chr7	133123265	133123465	-	1	NA	NA	NA	118	NM_009980	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.060000	0.651741	
mm_170470.1	chr1	90628149	90628349	-	1	NA	NA	NA	24824	NM_133805	108679	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	0.050000	0.502488	-33(CTTTAAATACCC,+,0.00)
mm_66662.1	chr7	45716980	45717180	-	1	NA	NA	NA	922	NM_203280	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.015000	0.517413	66(CCATTTAAAGTT,+,0.00)
mm_114433.1	chr13	65241416	65241616	+	1	NA	NA	NA	-35800	NM_175290	97895	Mm.315815	NM_175290	ENSMUSG00000032999	Nlrp4f	C330026N02Rik|C86045|Nalp-kappa|Nalp4f	NLR family, pyrin domain containing 4F	protein-coding	0.110000	0.601990	-16(CGGTTTTTAAGC,-,0.00)
mm_98789.1	chr11	96929275	96929475	+	1	NA	NA	NA	51	NM_146026	217138	Mm.342551	NM_146026	ENSMUSG00000047040	Prr15l	Atad4|BC022765|E230006A12Rik	proline rich 15-like	protein-coding	0.015000	0.611940	
mm_165074.1	chr19	45058181	45058381	-	1	NA	NA	NA	10705	NM_001178013	94280	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.035000	0.552239	
mm_89122.1	chr10	84838067	84838267	+	1	NA	NA	NA	19	NM_027689	71137	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.020000	0.512438	
mm_142791.1	chr17	50169809	50170009	-	1	NA	NA	NA	20588	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.035000	0.472637	
mm_150671.1	chr19	42051675	42051875	+	1	NA	NA	NA	-453	NM_025752	66765	Mm.440412	NM_025752	ENSMUSG00000090369	4933411K16Rik	-	RIKEN cDNA 4933411K16 gene	protein-coding	0.010000	0.492537	
mm_126070.1	chr15	77370730	77370930	+	1	NA	NA	NA	28280	NM_029419	75761	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	0.020000	0.522388	-34(TCCTATATAAAC,-,0.00)
mm_84315.1	chr9	63738266	63738466	-	1	NA	NA	NA	19628	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.015000	0.407960	
mm_65833.1	chr7	29180541	29180741	-	1	NA	NA	NA	32	NM_026545	57296	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	0.085000	0.616915	
mm_123581.1	chr14	67008751	67008951	-	1	NA	NA	NA	26	NM_009761	12177	Mm.29820	NM_009761	ENSMUSG00000022051	Bnip3l	C86132|D14Ertd719e|Nip3L|Nix	BCL2/adenovirus E1B interacting protein 3-like	protein-coding	0.085000	0.636816	
mm_124028.1	chr14	76694929	76695129	-	1	NA	NA	NA	17461	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.025000	0.562189	-36(CGCTATAAAAGG,-,0.00)
mm_141667.1	chr17	33824434	33824634	-	1	NA	NA	NA	-36	NM_016844	54127	Mm.352374	NM_016844	ENSMUSG00000067288	Rps28	-	ribosomal protein S28	protein-coding	0.100000	0.616915	6(GACTATAAAAGG,-,0.00)
mm_73985.1	chr8	120628605	120628805	+	1	NA	NA	NA	5677	NM_197988	68918	Mm.473736	NM_197988	ENSMUSG00000043687	1190005I06Rik	-	RIKEN cDNA 1190005I06 gene	protein-coding	0.005000	0.547264	
mm_51742.1	chr6	87373264	87373464	+	1	NA	NA	NA	-1	NM_025467	66284	Mm.46446	NM_025467	ENSMUSG00000030049	Gkn2	1810036H07Rik|Bricd1b	gastrokine 2	protein-coding	0.035000	0.482587	-33(GCCCATATAAAG,-,0.00),-31(CCATATAAAGGC,+,0.00),-31(CCATATAAAGGC,-,0.00)
mm_54199.1	chr6	24664807	24665007	-	1	NA	NA	NA	88	NM_001167745	73178	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0.135000	0.746269	
mm_20317.1	chr2	127314461	127314661	-	1	NA	NA	NA	-21598	NM_010090	13537	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.015000	0.542289	
mm_72320.1	chr8	78390882	78391082	+	1	NA	NA	NA	45670	NM_138944	18997	Mm.234261	NM_138944	ENSMUSG00000031688	Pou4f2	Brn-3.2|Brn-3b|Brn3b|Pou4f-rs1|mBrn3-3R	POU domain, class 4, transcription factor 2	protein-coding	0.025000	0.517413	
mm_109071.1	chr12	104345367	104345567	+	1	NA	NA	NA	6981	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.000000	0.442786	-78(CTCTTTATGGCC,+,0.00)
mm_91433.1	chr10	33256276	33256476	-	1	NA	NA	NA	-19	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.005000	0.407960	
mm_153825.1	chr19	46305503	46305703	-	1	NA	NA	NA	-92	NM_019408	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.080000	0.721393	
mm_151406.1	chr19	56548431	56548631	+	1	NA	NA	NA	270	NM_025811	66866	Mm.46346	NM_025811	ENSMUSG00000025078	Nhlrc2	1200003G01Rik|AI835049|AV002846|AW496455	NHL repeat containing 2	protein-coding	0.095000	0.676617	
mm_89636.1	chr10	96618673	96618873	+	1	NA	NA	NA	1772	NM_007569	12226	Mm.23811	NM_007569	ENSMUSG00000036478	Btg1	AI426953|AW546738	B cell translocation gene 1, anti-proliferative	protein-coding	0.000000	0.338308	
mm_26412.1	chr3	142608383	142608583	+	1	NA	NA	NA	-12180	NM_010260	14469	Mm.24038	NM_010260	ENSMUSG00000028270	Gbp2	-	guanylate binding protein 2	protein-coding	0.005000	0.393035	
mm_68735.1	chr7	120982183	120982383	-	1	NA	NA	NA	29	NM_007672	12585	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	0.115000	0.691542	-94(CACTCTATAGGC,-,0.00)
mm_133547.1	chr16	91269669	91269869	+	1	NA	NA	NA	0	NM_016968	50914	Mm.39300	NM_016968	ENSMUSG00000046160	Olig1	AI836478|AW494459|Bhlhb6|Olg-1|Oligo1|bHLHe21	oligodendrocyte transcription factor 1	protein-coding	0.105000	0.721393	
mm_122830.1	chr14	54712046	54712246	-	1	NA	NA	NA	28	NM_207131	110794	Mm.236223	NM_207131	ENSMUSG00000052435	Cebpe	C/EBPe|CRP1|Gm294	CCAAT/enhancer binding protein (C/EBP), epsilon	protein-coding	0.020000	0.567164	
mm_169022.1	chr13	112799120	112799320	+	1	NA	NA	NA	-1557	NM_008903	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.035000	0.532338	-32(CCCCTTATAAGC,-,0.00),-30(CCTTATAAGCAC,+,0.00)
mm_24416.1	chr3	90514891	90515091	+	1	NA	NA	NA	556	NM_009113	20196	Mm.6523	NM_009113	ENSMUSG00000042312	S100a13	-	S100 calcium binding protein A13	protein-coding	0.035000	0.562189	-31(GCTTATAAACTT,+,0.00)
mm_42032.1	chr5	108388282	108388482	+	1	NA	NA	NA	9	NM_008806	18587	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0.010000	0.557214	
mm_13427.1	chr2	104816798	104816998	+	1	NA	NA	NA	-202	NM_001123327	99003	Mm.274314	NM_001123327	ENSMUSG00000074994	Qser1	4732486I23Rik|AI502974	glutamine and serine rich 1	protein-coding	0.135000	0.791045	
mm_108425.1	chr12	82202847	82203047	+	1	NA	NA	NA	32931	NM_001167983	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.000000	0.393035	
mm_134970.1	chr16	32010024	32010224	-	1	NA	NA	NA	-6837	NM_177103	320213	Mm.152890	NM_023801	ENSMUSG00000022772	Senp5	6230429P13Rik|A730063F07Rik|AI851888|BB189556|SMT3IP3	SUMO/sentrin specific peptidase 5	protein-coding	0.015000	0.532338	
mm_35245.1	chr4	19877467	19877667	-	1	NA	NA	NA	44999	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.005000	0.358209	
mm_36067.1	chr4	57916348	57916548	-	1	NA	NA	NA	-184	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.015000	0.512438	
mm_659.1	chr1	40437184	40437384	+	1	NA	NA	NA	-2345	NM_001025602	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.015000	0.512438	
mm_40367.1	chr5	50543561	50543761	+	1	NA	NA	NA	290899	NR_106197	102465903		NR_106197	ENSMUSG00000099124	Mir8117	Gm27323|mmu-mir-8117	microRNA 8117	ncRNA	0.000000	0.402985	
mm_119367.1	chr14	41122406	41122606	+	1	NA	NA	NA	-9282	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.020000	0.497512	
mm_121165.1	chr14	103012798	103012998	+	1	NA	NA	NA	20905	NR_045657	71264	Mm.399572	NR_045657		4933432I03Rik	-	RIKEN cDNA 4933432I03 gene	ncRNA	0.005000	0.527363	
mm_116324.1	chr13	37993956	37994156	-	1	NA	NA	NA	134	NM_025965	107513	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0.115000	0.726368	
mm_124228.1	chr14	101198814	101199014	-	1	NA	NA	NA	1155	NM_029680	76627	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	0.015000	0.492537	
mm_111036.1	chr12	79191750	79191950	-	1	NA	NA	NA	-31	NM_021557	17252	Mm.291799	NM_021557	ENSMUSG00000066441	Rdh11	2610319N22Rik|AI428145|AU045252|Arsdr1|C85936|CGI-82|HCBP12|M42C60|Mdt1|Psdr1|SCALD|UBE-1c1|Ube-1c	retinol dehydrogenase 11	protein-coding	0.045000	0.552239	17(CTCTTTAGAGCA,+,0.00)
mm_19494.1	chr2	93430123	93430323	-	1	NA	NA	NA	-8216	NR_105967	102465605		NR_105967	ENSMUSG00000099238	Mir7001	Gm27886|mmu-mir-7001	microRNA 7001	ncRNA	0.035000	0.577114	
mm_4967.1	chr1	191281330	191281530	+	1	NA	NA	NA	36688	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.030000	0.582090	
mm_154491.1	chrM	6086	6286	-	1	NA	NA	NA	NA	NA									0.025000	0.373134	43(TCCTATATAGCC,+,0.00)
mm_105321.1	chr11	102889370	102889570	-	1	NA	NA	NA	4301	NM_025766	66784	Mm.483216	NM_025766	ENSMUSG00000075510	Fam187a	4933439F11Rik	family with sequence similarity 187, member A	protein-coding	0.025000	0.537313	
mm_141315.1	chr17	28361685	28361885	-	1	NA	NA	NA	3358	NM_021478	22157	Mm.42102	NM_021478	ENSMUSG00000037446	Tulp1	Tulp1l	tubby like protein 1	protein-coding	0.005000	0.472637	
mm_78276.1	chr9	22100158	22100358	+	1	NA	NA	NA	1005	NM_009922	12797	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	0.020000	0.587065	-99(CGCTATATAAGG,-,0.00),-97(CTATATAAGGGC,+,0.00),-80(TGCTTTATAAAG,-,0.00),-78(CTTTATAAAGCC,+,0.00)
mm_93247.1	chr10	95417005	95417205	-	1	NA	NA	NA	-248	NM_007706	216233	Mm.474283	NM_007706	ENSMUSG00000020027	Socs2	8030460M17|AI527257|AW108012|CIS2|Cish2|D130043N08Rik|JAB|SOCS-2|SSI-2|hg	suppressor of cytokine signaling 2	protein-coding	0.050000	0.651741	
mm_98894.1	chr11	97884444	97884644	+	1	NA	NA	NA	-390	NM_001081435	72973	Mm.245939	NM_001081435	ENSMUSG00000070336	Fbxo47	2900052P03Rik|Gm1562	F-box protein 47	protein-coding	0.035000	0.547264	11(GGCCCTTAAAAG,-,0.00),12(GCCCTTAAAAGC,-,0.00),13(CCCTTAAAAGCC,+,0.00),14(CCTTAAAAGCCC,+,0.00)
mm_98123.1	chr11	87216371	87216571	+	1	NA	NA	NA	89396	NM_197987	68729	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.040000	0.547264	
mm_36793.1	chr4	103114232	103114432	-	1	NA	NA	NA	-33	NM_146254	242584	Mm.374877	NM_146254	ENSMUSG00000035126	Wdr78	BC028975	WD repeat domain 78	protein-coding	0.100000	0.721393	
mm_172252.1	chr6	70144089	70144289	-	1	NA	NA	NA	647986	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.000000	0.447761	
mm_102419.1	chr11	59212577	59212777	-	1	NA	NA	NA	4316	NM_024210	67862	Mm.358708	NM_024210	ENSMUSG00000020441	2310033P09Rik	Mmtag2	RIKEN cDNA 2310033P09 gene	protein-coding	0.025000	0.562189	
mm_60533.1	chr7	44480223	44480423	+	1	NA	NA	NA	-4194	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.512438	
mm_77022.1	chr8	108584468	108584668	-	1	NA	NA	NA	109	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.020000	0.512438	-62(GCGTCTATAGGG,-,0.00)
mm_18241.1	chr2	52170414	52170614	-	1	NA	NA	NA	97677	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.025000	0.417910	
mm_50279.1	chr6	47044925	47045125	+	1	NA	NA	NA	-199371	NM_025771	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.085000	0.671642	
mm_125004.1	chr15	25363189	25363389	+	1	NA	NA	NA	50475	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.005000	0.278607	22(CCATTTATACAA,+,0.00)
mm_42425.1	chr5	115327629	115327829	+	1	NA	NA	NA	552	NR_036616	108014	Mm.287826	NM_025573	ENSMUSG00000029538	Srsf9	25kDa|2610029M16Rik|SRp30c|Sfrs9	serine/arginine-rich splicing factor 9	protein-coding	0.090000	0.651741	
mm_102964.1	chr11	69665722	69665922	-	1	NA	NA	NA	348	NM_001291058	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.025000	0.562189	
mm_15183.1	chr2	154193257	154193457	+	1	NA	NA	NA	2539	NM_001012392	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.015000	0.522388	
mm_89797.1	chr10	102512154	102512354	+	1	NA	NA	NA	32	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding	0.005000	0.547264	
mm_67446.1	chr7	80389786	80389986	-	1	NA	NA	NA	-1940	NM_010194	14159	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.015000	0.492537	
mm_100075.1	chr11	115462374	115462574	+	1	NA	NA	NA	1	NM_001080934	217316	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	0.020000	0.597015	
mm_20806.1	chr2	144330676	144330876	-	1	NA	NA	NA	586	NM_152947	107586	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0.105000	0.756219	
mm_16312.1	chr2	174298830	174299030	+	1	NA	NA	NA	1071	NM_001310085	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.065000	0.616915	
mm_84745.1	chr9	75407805	75408005	-	1	NA	NA	NA	1454	NM_027418	50772	Mm.480076	NM_015806	ENSMUSG00000042688	Mapk6	2610021I23Rik|D130053K17Rik|Erk3|Mapk4|Mapk63|Prkm4|Prkm6	mitogen-activated protein kinase 6	protein-coding	0.015000	0.412935	
mm_1798.1	chr1	80224946	80225146	+	1	NA	NA	NA	-11102	NM_173425	241128	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding	0.005000	0.527363	
mm_33211.1	chr4	126556907	126557107	+	1	NA	NA	NA	27	NM_175554	269582	Mm.243962	NM_175554	ENSMUSG00000042489	Clspn	B130025E01|C85083|E130314M08Rik	claspin	protein-coding	0.085000	0.631841	
mm_76307.1	chr8	84587528	84587728	-	1	NA	NA	NA	75224	NM_010499	15936	Mm.399	NM_010499	ENSMUSG00000053560	Ier2	AI317238|Ch1|Pip92	immediate early response 2	protein-coding	0.005000	0.547264	-55(CCTCATAGAGGG,+,0.00)
mm_140453.1	chr17	88627297	88627497	+	1	NA	NA	NA	842	NM_029858	77057	Mm.482203	NM_029858	ENSMUSG00000033855	Ston1	4921524J06Rik|C86231|Salf|Sblf	stonin 1	protein-coding	0.025000	0.527363	
mm_167484.1	chr8	129252862	129253062	+	1	NA	NA	NA	-10668	NM_001346808	102635552		NM_001346808		Gm32856	-	predicted gene, 32856	protein-coding	0.015000	0.482587	
mm_77168.1	chr8	111689438	111689638	-	1	NA	NA	NA	136	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.025000	0.631841	
mm_7363.1	chr1	106712308	106712508	-	1	NA	NA	NA	1882	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.035000	0.582090	
mm_75870.1	chr8	70764031	70764231	-	1	NA	NA	NA	2532	NM_023065	65972	Mm.30241	NM_023065	ENSMUSG00000031838	Ifi30	GILT|IP30	interferon gamma inducible protein 30	protein-coding	0.020000	0.587065	
mm_7606.1	chr1	126483612	126483812	-	1	NA	NA	NA	9215	NM_172484	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.005000	0.492537	
mm_52392.1	chr6	113301480	113301680	+	1	NA	NA	NA	-5557	NM_030178	78783	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.015000	0.532338	
mm_112540.1	chr13	9883203	9883403	+	1	NA	NA	NA	-117982	NM_144516	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.010000	0.432836	
mm_7746.1	chr1	131058609	131058809	-	1	NA	NA	NA	38864	NM_010548	16153	Mm.874	NM_010548	ENSMUSG00000016529	Il10	CSIF|Il-10	interleukin 10	protein-coding	0.030000	0.577114	
mm_114570.1	chr13	75089275	75089475	+	1	NA	NA	NA	-612	NM_013628	18548	Mm.1333	NM_013628	ENSMUSG00000021587	Pcsk1	Nec-1|Nec1|PC1|PC3|Phpp-1|SPC3	proprotein convertase subtilisin/kexin type 1	protein-coding	0.015000	0.368159	
mm_12978.1	chr2	90777510	90777710	+	1	NA	NA	NA	-5134	NM_178755	271813	Mm.61146	NM_178755	ENSMUSG00000040812	Agbl2	4930524K04|A430081C19Rik|CCP2	ATP/GTP binding protein-like 2	protein-coding	0.010000	0.517413	-80(CTTTTTATAGTT,+,0.00)
mm_40454.1	chr5	53603942	53604142	+	1	NA	NA	NA	13556	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.015000	0.388060	7(GTTTTTAAACTG,+,0.00)
mm_171871.1	chr5	28593900	28594100	-	1	NA	NA	NA	-126899	NM_009170	20423	Mm.57202	NM_009170	ENSMUSG00000002633	Shh	9530036O11Rik|Dsh|Hhg1|Hx|Hxl3|M100081	sonic hedgehog	protein-coding	0.060000	0.646766	
mm_51064.1	chr6	65952452	65952652	+	1	NA	NA	NA	-19	NM_001161773	67653	Mm.389756	NM_001161773	ENSMUSG00000036463	4930544G11Rik	-	RIKEN cDNA 4930544G11 gene	protein-coding	0.035000	0.532338	
mm_7228.1	chr1	93343411	93343611	-	1	NA	NA	NA	-134	NM_023200	66385	Mm.88704	NM_023200	ENSMUSG00000026275	Ppp1r7	2310014J01Rik|SDS22	protein phosphatase 1, regulatory (inhibitor) subunit 7	protein-coding	0.045000	0.532338	
mm_96341.1	chr11	66911924	66912124	+	1	NA	NA	NA	33	NM_178656	193003	Mm.440256	NM_178656	ENSMUSG00000048070	Pirt	A530088H08Rik	phosphoinositide-interacting regulator of transient receptor potential channels	protein-coding	0.025000	0.582090	
mm_130815.1	chr15	101743008	101743208	-	1	NA	NA	NA	-11	NM_019956	56735	Mm.358677	NM_019956	ENSMUSG00000051879	Krt71	AA589543|Ca|Cal4|Cu|Krt2-6g|mK6irs|mK6irs1	keratin 71	protein-coding	0.015000	0.537313	-34(GCATATATAAAG,-,0.00)
mm_104227.1	chr11	88552494	88552694	-	1	NA	NA	NA	-66657	NR_131025	68397	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	0.025000	0.507463	
mm_130632.1	chr15	100424114	100424314	-	1	NA	NA	NA	1021	NR_040351	432982	Mm.234608	NM_001034883	ENSMUSG00000087444	Gm5475	EG432982	predicted gene 5475	ncRNA	0.025000	0.507463	10(GCATATATAGAG,+,0.00)
mm_104950.1	chr11	100135847	100136047	-	1	NA	NA	NA	2	NM_008469	16665	Mm.440010	NM_008469	ENSMUSG00000054146	Krt15	AI528832|K15|Krt1-15	keratin 15	protein-coding	0.010000	0.601990	-34(GGGTTTATAAGG,-,0.00),-32(GTTTATAAGGAG,+,0.00)
mm_138187.1	chr17	34268580	34268780	+	1	NA	NA	NA	5453	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.010000	0.547264	
mm_118549.1	chr14	17659698	17659898	+	1	NA	NA	NA	-1162	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.035000	0.527363	
mm_143237.1	chr17	63500207	63500407	-	1	NA	NA	NA	273	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.175000	0.786070	
mm_143656.1	chr17	79713545	79713745	-	1	NA	NA	NA	1396	NM_009994	13078	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0.080000	0.626866	
mm_56841.1	chr6	117473023	117473223	-	1	NA	NA	NA	278646	NR_045731	72263	Mm.443289	NR_045731	ENSMUSG00000099869	1700030F04Rik	-	RIKEN cDNA 1700030F04 gene	ncRNA	0.015000	0.487562	
mm_12250.1	chr2	68898784	68898984	+	1	NA	NA	NA	37443	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.000000	0.412935	
mm_85485.1	chr9	106096684	106096884	-	1	NA	NA	NA	-93	NM_026763	68553	Mm.28854	NM_026763	ENSMUSG00000032572	Col6a4	1110001D15Rik|AI413310|AU023415|Dvwa|EG235580|Vwa6	collagen, type VI, alpha 4	protein-coding	0.015000	0.582090	
mm_125326.1	chr15	38518670	38518870	+	1	NA	NA	NA	496	NM_001301688	54375	Mm.250214	NM_018745	ENSMUSG00000037458	Azin1	1700085L02Rik|AZI|Oazi|Oazin	antizyme inhibitor 1	protein-coding	0.165000	0.825871	
mm_112535.1	chr13	9684145	9684345	+	1	NA	NA	NA	79565	NM_001347471	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.020000	0.462687	
mm_137913.1	chr17	32113757	32113957	+	1	NA	NA	NA	-22434	NR_027316	435518	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	ENSMUSG00000002791|Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0.080000	0.651741	
mm_25583.1	chr3	116870340	116870540	+	1	NA	NA	NA	8760	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.010000	0.398010	56(AATTTTAAAAGG,-,0.00)
mm_41455.1	chr5	90905597	90905797	+	1	NA	NA	NA	1798	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.010000	0.417910	
mm_47433.1	chr5	123178123	123178323	-	1	NA	NA	NA	4463	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.010000	0.527363	
mm_48858.1	chr5	149680079	149680279	-	1	NA	NA	NA	1922	NM_001081204	381694	Mm.45060	NM_001081204	ENSMUSG00000051950	B3glct	B3galtl|Gm1057	beta-3-glucosyltransferase	protein-coding	0.015000	0.497512	
mm_163271.1	chr11	115188568	115188768	-	1	NA	NA	NA	1181	NM_001033393	320534	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	0.010000	0.497512	-76(GTGTCTAAAAGG,-,0.00)
mm_18289.1	chr2	52674644	52674844	-	1	NA	NA	NA	1115	NM_001285428	12298	Mm.330223	NM_146123	ENSMUSG00000017412	Cacnb4	3110038O15Rik|Cchb4|lh	calcium channel, voltage-dependent, beta 4 subunit	protein-coding	0.020000	0.328358	64(GCGCTTAAAAGG,-,0.00),66(GCTTAAAAGGTC,+,0.00)
mm_123688.1	chr14	69635084	69635284	-	1	NA	NA	NA	25708	NM_033325	94352	Mm.116714	NM_033325	ENSMUSG00000034205	Loxl2	1110004B06Rik|4930526G11Rik|9430067E15Rik	lysyl oxidase-like 2	protein-coding	0.005000	0.492537	
mm_98670.1	chr11	96282881	96283081	+	1	NA	NA	NA	1076	NM_010461	15416	Mm.4822	NM_010461	ENSMUSG00000056648	Hoxb8	Hox-2.4	homeobox B8	protein-coding	0.070000	0.592040	
mm_14752.1	chr2	144599893	144600093	+	1	NA	NA	NA	40	NM_025314	66044	Mm.28109	NM_025314	ENSMUSG00000027430	Dtd1	0610006H08Rik|DUE-B|Hars2	D-tyrosyl-tRNA deacylase 1	protein-coding	0.105000	0.661692	
mm_93182.1	chr10	93820718	93820918	-	1	NA	NA	NA	-10737	NM_183199	327799	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.020000	0.457711	
mm_172512.1	chr7	72654488	72654688	+	1	NA	NA	NA	-347993	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.055000	0.611940	
mm_129721.1	chr15	81956119	81956319	-	1	NA	NA	NA	4711	NM_001282040	29858	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	0.020000	0.567164	
mm_63023.1	chr7	121034652	121034852	+	1	NA	NA	NA	307	NM_021554	59052	Mm.29122	NM_021554	ENSMUSG00000030876	Mettl9	0610012D09Rik|AA517660|Drev|MNCb-5680	methyltransferase like 9	protein-coding	0.120000	0.761194	
mm_123960.1	chr14	74876197	74876397	-	1	NA	NA	NA	71580	NM_001252132	380916	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.005000	0.432836	
mm_43983.1	chr5	146292539	146292739	+	1	NA	NA	NA	60964	NM_153599	264064	Mm.260576	NM_153599	ENSMUSG00000029635	Cdk8	-	cyclin-dependent kinase 8	protein-coding	0.010000	0.323383	-26(TTCTTTTAAAGA,-,0.00),-25(TCTTTTAAAGAT,+,0.00)
mm_122266.1	chr14	34310474	34310674	-	1	NA	NA	NA	-71	NM_029389	75698	Mm.45406	NM_029389	ENSMUSG00000041471	Fam35a	3110001K24Rik	family with sequence similarity 35, member A	protein-coding	0.180000	0.810945	
mm_28211.1	chr3	88369633	88369833	-	1	NA	NA	NA	98	NM_031368	12095	Mm.482191	NM_031368	ENSMUSG00000074489	Bglap3	AI461847|Bglap-rs1|OC-X|ORG|mOC-X	bone gamma-carboxyglutamate protein 3	protein-coding	0.010000	0.472637	-34(GGTTATATAAGG,-,0.00)
mm_65732.1	chr7	28381838	28382038	-	1	NA	NA	NA	-2710	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.045000	0.601990	
mm_101402.1	chr11	26593829	26594029	-	1	NA	NA	NA	-9	NM_001252447	69922	Mm.285351	NM_027260	ENSMUSG00000064090	Vrk2	2810003O05Rik|AI447698	vaccinia related kinase 2	protein-coding	0.010000	0.527363	
mm_107774.1	chr12	59140356	59140556	+	1	NA	NA	NA	9003	NM_001165253	338320	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	melanoma inhibitory activity 2	protein-coding	0.030000	0.462687	
mm_102469.1	chr11	59983411	59983611	-	1	NA	NA	NA	-18567	NM_009026	19416	Mm.3903	NM_009026	ENSMUSG00000049892	Rasd1	Dexras1	RAS, dexamethasone-induced 1	protein-coding	0.030000	0.592040	
mm_80097.1	chr9	70275800	70276000	+	1	NA	NA	NA	68550	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.010000	0.452736	
mm_55801.1	chr6	82774356	82774556	-	1	NA	NA	NA	-2	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.050000	0.606965	
mm_153119.1	chr19	33392137	33392337	-	1	NA	NA	NA	58	NM_001167818	67795	Mm.204591	NM_001146342	ENSMUSG00000071573	Rnls	6530404N21Rik|AI452315|AW060440|C10orf59	renalase, FAD-dependent amine oxidase	protein-coding	0.070000	0.666667	
mm_151020.1	chr19	46819417	46819617	+	1	NA	NA	NA	57908	NM_001102471	94219	Mm.306903	NM_033569	ENSMUSG00000064105	Cnnm2	AU015877|AW048635|Acdp2|Clp2	cyclin M2	protein-coding	0.025000	0.557214	
mm_37207.1	chr4	117872668	117872868	-	1	NA	NA	NA	-298	NM_001034876	381546	Mm.440118	NM_001034876	ENSMUSG00000078588	Ccdc24	Gm1028	coiled-coil domain containing 24	protein-coding	0.025000	0.611940	
mm_112988.1	chr13	21495139	21495339	+	1	NA	NA	NA	11285	NR_026798	100038371	Mm.133328	NR_026798		Zfp389	ENSMUSG00000075041|OTTMUSG00000018077	zinc finger protein 389	pseudo	0.075000	0.537313	
mm_103868.1	chr11	83524632	83524832	-	1	NA	NA	NA	-2633	NM_001045543	629303	Mm.390417	NM_001045543	ENSMUSG00000018925	Heatr9	Gm11435|OTTMUSG00000000990	HEAT repeat containing 9	protein-coding	0.015000	0.507463	
mm_1177.1	chr1	61638730	61638930	+	1	NA	NA	NA	6	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0.150000	0.771144	-44(GCCCCTTTAAGA,-,0.00),-42(CCCTTTAAGAGC,+,0.00),-42(CCCTTTAAGAGC,-,0.00),-41(CCTTTAAGAGCC,+,0.00)
mm_40204.1	chr5	37028375	37028575	+	1	NA	NA	NA	-22382	NM_178394	76071	Mm.85280	NM_178394	ENSMUSG00000063646	Jakmip1	5830437M04Rik|C330021K24Rik|Gababrbp|Marlin-1	janus kinase and microtubule interacting protein 1	protein-coding	0.110000	0.616915	
mm_163126.1	chr11	77200862	77201062	-	1	NA	NA	NA	-11994	NM_176965	319634	Mm.108786	NM_176965	ENSMUSG00000050944	Efcab5	4930563A03Rik	EF-hand calcium binding domain 5	protein-coding	0.005000	0.442786	
mm_29405.1	chr3	108907714	108907914	-	1	NA	NA	NA	3890	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.005000	0.373134	
mm_76271.1	chr8	84104686	84104886	-	1	NA	NA	NA	-24	NM_172502	212123	Mm.260557	NM_172502	ENSMUSG00000037103	Dcaf15	6720484B16	DDB1 and CUL4 associated factor 15	protein-coding	0.095000	0.671642	
mm_42078.1	chr5	110176459	110176659	+	1	NA	NA	NA	-55	NR_040430	100504007	Mm.441495	NR_040430	ENSMUSG00000086247	Gm15787	OTTMUSG00000026209	predicted gene 15787	ncRNA	0.080000	0.616915	
mm_106261.1	chr11	117967863	117968063	-	1	NA	NA	NA	1403	NM_007707	12702	Mm.3468	NM_007707	ENSMUSG00000053113	Socs3	Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3	suppressor of cytokine signaling 3	protein-coding	0.085000	0.621891	
mm_139372.1	chr17	51832667	51832867	+	1	NA	NA	NA	-120	NM_009122	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.165000	0.820896	-100(GCGTTTAAAGGG,-,0.00)
mm_21177.1	chr2	154892757	154892957	-	1	NA	NA	NA	49	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.105000	0.621891	
mm_43058.1	chr5	124194803	124195003	+	1	NA	NA	NA	-7721	NM_001289472	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.010000	0.507463	
mm_125104.1	chr15	27770891	27771091	+	1	NA	NA	NA	-89449	NM_001242423	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.030000	0.592040	
mm_149304.1	chr19	10732024	10732224	+	1	NA	NA	NA	6850	NM_007650	12507	Mm.779	NM_007650	ENSMUSG00000024669	Cd5	Ly-1|Ly-12|Ly-A|Lyt-1	CD5 antigen	protein-coding	0.015000	0.452736	
mm_13371.1	chr2	103575271	103575471	+	1	NA	NA	NA	9061	NM_178890	99382	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.005000	0.378109	
mm_80665.1	chr9	90073987	90074187	+	1	NA	NA	NA	19820	NM_001312649	13036	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.010000	0.437811	
mm_1536.1	chr1	72849540	72849740	+	1	NA	NA	NA	24253	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.030000	0.601990	
mm_147717.1	chr18	60812545	60812745	-	1	NA	NA	NA	569	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.010000	0.512438	
mm_58791.1	chr7	16130209	16130409	+	1	NA	NA	NA	483	NM_148946	110891	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	0.070000	0.726368	
mm_16123.1	chr2	170133569	170133769	+	1	NA	NA	NA	-2449	NM_001033299	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.075000	0.611940	
mm_68182.1	chr7	104129687	104129887	-	1	NA	NA	NA	36	NM_027634	70980	Mm.158518	NM_027634	ENSMUSG00000055643	4931431F19Rik	-	RIKEN cDNA 4931431F19 gene	protein-coding	0.020000	0.567164	
mm_138984.1	chr17	45487315	45487515	+	1	NA	NA	NA	-12477	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.015000	0.552239	
mm_32767.1	chr4	116693632	116693832	+	1	NA	NA	NA	-7710	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.030000	0.407960	
mm_106399.1	chr11	118868830	118869030	-	1	NA	NA	NA	40642	NM_001024931	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.020000	0.417910	
mm_71111.1	chr8	35723571	35723771	+	1	NA	NA	NA	102888	NM_027998	71908	Mm.37817	NM_027998	ENSMUSG00000055976	Cldn23	2310014B08Rik	claudin 23	protein-coding	0.020000	0.447761	
mm_141155.1	chr17	26506521	26506721	-	1	NA	NA	NA	1851	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.020000	0.492537	
mm_135110.1	chr16	35769415	35769615	-	1	NA	NA	NA	-159	NM_153550	224132	Mm.24094	NM_153550	ENSMUSG00000022848	Dirc2	RCC4	disrupted in renal carcinoma 2 (human)	protein-coding	0.065000	0.597015	
mm_72852.1	chr8	88320730	88320930	+	1	NA	NA	NA	26626	NM_001037724	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.015000	0.497512	
mm_69437.1	chr7	132888549	132888749	-	1	NA	NA	NA	29424	NM_198017	109359	Mm.274824	NM_198017	ENSMUSG00000030965	Fam175b	AA589499|AI853413|Abro1|C430003P19Rik	family with sequence similarity 175, member B	protein-coding	0.005000	0.497512	
mm_159792.1	chr5	109419683	109419883	+	1	NA	NA	NA	-230	NM_001104628	384221	Mm.469879	NM_001104628	ENSMUSG00000091879	Vmn2r17	EG384221	vomeronasal 2, receptor 17	protein-coding	0.010000	0.407960	
mm_121357.1	chr14	117004478	117004678	+	1	NA	NA	NA	79281	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.010000	0.328358	
mm_111524.1	chr12	100203609	100203809	-	1	NA	NA	NA	3565	NM_001313934	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.025000	0.497512	
mm_101238.1	chr11	20694817	20695017	-	1	NA	NA	NA	46639	NM_001290545	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.005000	0.283582	
mm_115016.1	chr13	98354990	98355190	+	1	NA	NA	NA	845	NM_008242	15229	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	0.080000	0.582090	
mm_140626.1	chr17	12318685	12318885	-	1	NA	NA	NA	-68	NR_045290	224523	Mm.188855	NR_045290	ENSMUSG00000097350	4732491K20Rik	-	RIKEN cDNA 4732491K20 gene	ncRNA	0.140000	0.761194	
mm_29579.1	chr3	117321400	117321600	-	1	NA	NA	NA	39376	NM_177664	229791	Mm.140138	NM_177664	ENSMUSG00000044667	Plppr4	A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455	phospholipid phosphatase related 4	protein-coding	0.010000	0.368159	
mm_75617.1	chr8	64205891	64206091	-	1	NA	NA	NA	2	NM_009390	21892	Mm.418367	NM_009390	ENSMUSG00000053626	Tll1	Tll|Tll-1	tolloid-like	protein-coding	0.035000	0.527363	47(GCTTTTAAGGTC,+,0.00)
mm_125922.1	chr15	76199456	76199656	+	1	NA	NA	NA	-150	NM_201392	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.050000	0.656716	
mm_47478.1	chr5	123736526	123736726	-	1	NA	NA	NA	12788	NM_001005525	208606	Mm.276341	NM_025438	ENSMUSG00000029422	Rsrc2	1500011J06Rik	arginine/serine-rich coiled-coil 2	protein-coding	0.015000	0.402985	
mm_48933.1	chr6	4537762	4537962	+	1	NA	NA	NA	32244	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.010000	0.537313	
mm_47924.1	chr5	135012685	135012885	-	1	NA	NA	NA	372	NR_026688	69812	Mm.18422	NR_026688	ENSMUSG00000085042	Abhd11os	2010001M06Rik|AI462243|Wbscr26|Wnscr26	abhydrolase domain containing 11, opposite strand	ncRNA	0.015000	0.601990	
mm_145782.1	chr18	65077535	65077735	+	1	NA	NA	NA	54108	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.010000	0.358209	
mm_2937.1	chr1	132299207	132299407	+	1	NA	NA	NA	681	NM_144810	213417	Mm.39723	NM_144810	ENSMUSG00000042115	Klhdc8a	A630065K24Rik	kelch domain containing 8A	protein-coding	0.060000	0.666667	
mm_40049.1	chr5	33983592	33983792	+	1	NA	NA	NA	259	NM_001310546	381633	Mm.4923	NM_001033458	ENSMUSG00000070858	Gm1673	-	predicted gene 1673	protein-coding	0.090000	0.721393	
mm_103676.1	chr11	79243230	79243430	-	1	NA	NA	NA	-306	NM_001042565	78889	Mm.307022	NM_019653	ENSMUSG00000017677	Wsb1	1110056B13Rik|2700038M07Rik	WD repeat and SOCS box-containing 1	protein-coding	0.025000	0.378109	-15(TCCTTTAAAAGT,-,0.00),-14(CCTTTAAAAGTA,+,0.00)
mm_17673.1	chr2	32236269	32236469	-	1	NA	NA	NA	-314	NM_145145	99011	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0.070000	0.527363	
mm_81360.1	chr9	108689244	108689444	+	1	NA	NA	NA	-2799	NM_008924	19087	Mm.253102	NM_008924	ENSMUSG00000032601	Prkar2a	1110061A24Rik|AI317181|AI836829|RII(alpha)	protein kinase, cAMP dependent regulatory, type II alpha	protein-coding	0.000000	0.482587	74(GCATAAATGGGC,+,0.00)
mm_75920.1	chr8	71485916	71486116	-	1	NA	NA	NA	51	NM_001164679	382014	Mm.260360	NM_001164679	ENSMUSG00000034863	Ano8	BC053460|Tmem16h	anoctamin 8	protein-coding	0.085000	0.666667	
mm_40184.1	chr5	36237622	36237822	+	1	NA	NA	NA	33701	NM_175249	76943	Mm.44242	NM_175249	ENSMUSG00000043430	Psapl1	2310020A21Rik	prosaposin-like 1	protein-coding	0.025000	0.547264	
mm_101882.1	chr11	48928127	48928327	-	1	NA	NA	NA	-1045	NM_001045540	620913	Mm.452174	NM_001045540	ENSMUSG00000048852	Gm12185	Irgb2b1|OTTMUSG00000005523	predicted gene 12185	protein-coding	0.005000	0.467662	
mm_35354.1	chr4	32280599	32280799	-	1	NA	NA	NA	-136736	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.020000	0.542289	
mm_156416.1	chrX	140664825	140665025	+	1	NA	NA	NA	-13103	NM_011845	23947	Mm.131097	NM_011845	ENSMUSG00000000266	Mid2	FXY2|Trim1	midline 2	protein-coding	0.065000	0.606965	
mm_61674.1	chr7	80830729	80830929	+	1	NA	NA	NA	-27498	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.010000	0.552239	
mm_137742.1	chr17	29368899	29369099	+	1	NA	NA	NA	8085	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.020000	0.592040	58(GACTTTTAGAGC,-,0.00),59(ACTTTTAGAGCC,+,0.00)
mm_87700.1	chr10	59861393	59861593	+	1	NA	NA	NA	-18098	NM_019965	56709	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.020000	0.537313	
mm_1669.1	chr1	74779325	74779525	+	1	NA	NA	NA	7533	NM_009526	22420	Mm.268282	NM_009526	ENSMUSG00000033227	Wnt6	AA409270|Wnt-6	wingless-type MMTV integration site family, member 6	protein-coding	0.005000	0.537313	
mm_170128.1	chr17	39847046	39847246	+	1	NA	NA	NA	4149	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.110000	0.631841	
mm_16757.1	chr2	9869309	9869509	-	1	NA	NA	NA	9191	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.020000	0.442786	
mm_1315.1	chr1	65080137	65080337	+	1	NA	NA	NA	2053	NM_144761	12965	Mm.440053	NM_144761	ENSMUSG00000073658	Crygb	Cryg-3|DGcry-3|Nop	crystallin, gamma B	protein-coding	0.015000	0.393035	
mm_29972.1	chr3	133544309	133544509	-	1	NA	NA	NA	-19	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.165000	0.741294	
mm_167558.1	chr9	37008099	37008299	+	1	NA	NA	NA	139123	NM_148950	208076	Mm.260335	NM_148950	ENSMUSG00000035934	Pknox2	D230005H23Rik|Prep2	Pbx/knotted 1 homeobox 2	protein-coding	0.005000	0.497512	
mm_7485.1	chr1	121327554	121327754	-	1	NA	NA	NA	24	NM_001271531	72999	Mm.27136	NM_133748	ENSMUSG00000003721	Insig2	2900053I11Rik|C730043J18Rik|Insig-2	insulin induced gene 2	protein-coding	0.065000	0.646766	
mm_69253.1	chr7	127850894	127851094	-	1	NA	NA	NA	9186	NM_009294	20909	Mm.24867	NM_009294	ENSMUSG00000030805	Stx4a	Stx4|Syn-4|Syn4	syntaxin 4A (placental)	protein-coding	0.020000	0.497512	
mm_43993.1	chr5	146795846	146796046	+	1	NA	NA	NA	-990	NM_011669	22217	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.020000	0.477612	
mm_3700.1	chr1	153762498	153762698	+	1	NA	NA	NA	13172	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.005000	0.427861	13(ACCCATATAAAG,-,0.00),15(CCATATAAAGGT,+,0.00)
mm_126159.1	chr15	78428531	78428731	+	1	NA	NA	NA	67	NR_110357	72844	Mm.390816	NM_001081367	ENSMUSG00000033287	Kctd17	2900008M13Rik|AA414907|AW742389|N28155	potassium channel tetramerisation domain containing 17	protein-coding	0.100000	0.716418	
mm_79292.1	chr9	51272789	51272989	+	1	NA	NA	NA	5665	NM_001195681	100502940	Mm.235705	NM_001195681	ENSMUSG00000079559	Gm684	-	predicted gene 684	protein-coding	0.025000	0.482587	-33(GGCTATAAAAGC,-,0.00)
mm_59195.1	chr7	24501531	24501731	+	1	NA	NA	NA	-5456	NM_001290461	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.085000	0.611940	
mm_120479.1	chr14	65975556	65975756	+	1	NA	NA	NA	7173	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.050000	0.567164	
mm_43915.1	chr5	144545786	144545986	+	1	NA	NA	NA	-1	NM_016789	53324	Mm.10099	NM_016789	ENSMUSG00000059991	Nptx2	Narp|np2	neuronal pentraxin 2	protein-coding	0.155000	0.716418	
mm_76122.1	chr8	80869048	80869248	-	1	NA	NA	NA	11331	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.035000	0.532338	
mm_47742.1	chr5	130255235	130255435	-	1	NA	NA	NA	195	NM_023248	66711	Mm.280484	NM_023248	ENSMUSG00000025337	Sbds	4733401P19Rik|AI836084|CGI-97|SDS	Shwachman-Bodian-Diamond syndrome homolog (human)	protein-coding	0.100000	0.606965	88(TGCTATAAAAAC,-,0.00)
mm_74877.1	chr8	25054778	25054978	-	1	NA	NA	NA	-15916	NM_001081187	330723	Mm.334452	NM_001081187	ENSMUSG00000037406	Htra4	B430206E18Rik	HtrA serine peptidase 4	protein-coding	0.005000	0.422886	
mm_104090.1	chr11	86635423	86635623	-	1	NA	NA	NA	-20548	NR_106195	102465902		NR_106195	ENSMUSG00000099324	Mir8115	Gm28012|mmu-mir-8115	microRNA 8115	ncRNA	0.005000	0.442786	
mm_25563.1	chr3	116562918	116563118	+	1	NA	NA	NA	45	NM_175413	109245	Mm.216027	NM_027321	ENSMUSG00000027961	Lrrc39	2010005E21Rik|9430028I06Rik|Myomasp	leucine rich repeat containing 39	protein-coding	0.010000	0.487562	
mm_157664.1	chrX	58038554	58038754	-	1	NA	NA	NA	8026	NM_009575	22773	Mm.255890	NM_009575	ENSMUSG00000067860	Zic3	Bn|Ka	zinc finger protein of the cerebellum 3	protein-coding	0.105000	0.696517	-34(GGCTTGAAAAGG,-,0.00)
mm_97655.1	chr11	79528035	79528235	+	1	NA	NA	NA	2474	NM_146023	101488212	Mm.439665	NM_146023	ENSMUSG00000070354	Gm21975	Evi2a-evi2b	predicted gene 21975	protein-coding	0.005000	0.462687	-34(CTCCTTTTAAGG,-,0.00),-33(TCCTTTTAAGGG,-,0.00),-32(CCTTTTAAGGGA,+,0.00),-31(CTTTTAAGGGAG,+,0.00)
mm_172630.1	chr8	20424608	20424808	-	1	NA	NA	NA	106	NR_028428	381598	Mm.359054	NM_001024708	ENSMUSG00000071793	2610005L07Rik	2810038F24Rik|6720476A01Rik	cadherin 11 pseudogene	pseudo	0.085000	0.651741	
mm_30337.1	chr3	151732237	151732437	-	1	NA	NA	NA	17622	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.010000	0.422886	
mm_157275.1	chrX	20307184	20307384	-	1	NA	NA	NA	-15520	NM_177353	236727	Mm.132983	NM_177353	ENSMUSG00000037341	Slc9a7	A530087D17Rik|NHE7	solute carrier family 9 (sodium/hydrogen exchanger), member 7	protein-coding	0.005000	0.422886	-34(TCCTATAAAAGG,-,0.00)
mm_145436.1	chr18	58836636	58836836	+	1	NA	NA	NA	373	NM_175506	240322	Mm.71963	NM_175506	ENSMUSG00000053441	Adamts19	4831407I23Rik|AU015154|D230034E10Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19	protein-coding	0.110000	0.756219	
mm_163545.1	chr13	18745005	18745205	+	1	NA	NA	NA	27813	NM_172120	218035	Mm.27389	NM_172120	ENSMUSG00000041236	Vps41	AI317346|Vam2|mVam2	VPS41 HOPS complex subunit	protein-coding	0.005000	0.427861	21(CCTTTTCTAGGG,+,0.00)
mm_55238.1	chr6	52260687	52260887	-	1	NA	NA	NA	93	NM_008264	15398	Mm.377086	NM_008264		Hoxa13	Hd|Hox-1.10	homeobox A13	protein-coding	0.120000	0.696517	-35(GGCTTTTTAAAA,-,0.00)
mm_75542.1	chr8	57487498	57487698	-	1	NA	NA	NA	262	NM_021788	60406	Mm.118	NM_021788	ENSMUSG00000031609	Sap30	30kDa	sin3 associated polypeptide	protein-coding	0.145000	0.751244	
mm_76046.1	chr8	77610520	77610720	-	1	NA	NA	NA	33	NM_145599	234463	Mm.273578	NM_145599	ENSMUSG00000031617	Tmem184c	8430433H16Rik|AI645453|AL033298|BC004056|Tmem34	transmembrane protein 184C	protein-coding	0.040000	0.567164	
mm_97403.1	chr11	77850628	77850828	+	1	NA	NA	NA	43144	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding	0.025000	0.582090	
mm_35488.1	chr4	40942763	40942963	-	1	NA	NA	NA	5431	NM_009736	12017	Mm.688	NM_009736	ENSMUSG00000028416	Bag1	BAG-1|Rap46	BCL2-associated athanogene 1	protein-coding	0.015000	0.557214	
mm_106050.1	chr11	116080522	116080722	-	1	NA	NA	NA	-2661	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.020000	0.606965	
mm_149172.1	chr19	9085094	9085294	+	1	NA	NA	NA	2762	NM_011681	22287	Mm.2258	NM_011681	ENSMUSG00000024653	Scgb1a1	CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg	secretoglobin, family 1A, member 1 (uteroglobin)	protein-coding	0.010000	0.467662	
mm_133495.1	chr16	90385915	90386115	+	1	NA	NA	NA	-382	NM_015755	26559	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.100000	0.656716	
mm_114755.1	chr13	85126652	85126852	+	1	NA	NA	NA	-62633	NM_001347587	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0.010000	0.368159	
mm_121600.1	chr14	7994492	7994692	-	1	NA	NA	NA	-410	NM_007870	13421	Mm.272258	NM_007870	ENSMUSG00000025279	Dnase1l3	DNasegamma|Dhp2|Lsd	deoxyribonuclease 1-like 3	protein-coding	0.020000	0.582090	
mm_16570.1	chr2	3422467	3422667	-	1	NA	NA	NA	81	NM_008579	104362	Mm.2688	NM_008579	ENSMUSG00000026650	Meig1	MLZ-278|Meg1	meiosis expressed gene 1	protein-coding	0.010000	0.417910	
mm_52363.1	chr6	112696268	112696468	+	1	NA	NA	NA	302	NM_021385	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.105000	0.611940	
mm_76004.1	chr8	72491596	72491796	-	1	NA	NA	NA	918	NM_177766	270066	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	0.030000	0.542289	
mm_3739.1	chr1	155158640	155158840	+	1	NA	NA	NA	37	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.130000	0.741294	
mm_36744.1	chr4	99972831	99973031	-	1	NA	NA	NA	43480	NM_028132	72157	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.020000	0.532338	
mm_37504.1	chr4	123750165	123750365	-	1	NA	NA	NA	34	NM_023423	68050	Mm.27903	NM_023423	ENSMUSG00000023075	Akirin1	6330407G11Rik	akirin 1	protein-coding	0.110000	0.706468	
mm_172114.1	chr6	3200897	3201097	+	1	NA	NA	NA	-87522	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.050000	0.517413	
mm_108424.1	chr12	82170227	82170427	+	1	NA	NA	NA	311	NM_001167983	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.115000	0.706468	
mm_95981.1	chr11	58974564	58974764	+	1	NA	NA	NA	-3429	NM_001290988	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.010000	0.522388	
mm_99829.1	chr11	108921038	108921238	+	1	NA	NA	NA	789	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.135000	0.771144	
mm_135452.1	chr16	45724375	45724575	-	1	NA	NA	NA	56	NM_019754	56370	Mm.24183	NM_019754	ENSMUSG00000022658	Tagln3	2700038H05Rik|2900005O10Rik|AI426007|Np25	transgelin 3	protein-coding	0.055000	0.601990	
mm_131693.1	chr16	20693193	20693393	+	1	NA	NA	NA	-1764	NM_133778	78408	Mm.196512	NM_133778	ENSMUSG00000050821	Fam131a	2900046G09Rik	family with sequence similarity 131, member A	protein-coding	0.075000	0.701493	
mm_9304.1	chr1	171639153	171639353	-	1	NA	NA	NA	2647	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.025000	0.467662	
mm_30688.1	chr4	11485870	11486070	+	1	NA	NA	NA	12	NM_001347055	66185	Mm.331487	NM_001081183	ENSMUSG00000040720	1110037F02Rik	4930422M05Rik|Kiaa1429|mKIAA1429	RIKEN cDNA 1110037F02 gene	protein-coding	0.070000	0.631841	
mm_31396.1	chr4	48045134	48045334	+	1	NA	NA	NA	-71	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.090000	0.661692	
mm_49607.1	chr6	30746182	30746382	+	1	NA	NA	NA	4983	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.010000	0.427861	
mm_149207.1	chr19	9980612	9980812	+	1	NA	NA	NA	112	NR_073181	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.015000	0.472637	
mm_65739.1	chr7	28401024	28401224	-	1	NA	NA	NA	8128	NM_019458	54624	Mm.7916	NM_019458	ENSMUSG00000003437	Paf1	5730511K23Rik|AA675045	Paf1, RNA polymerase II complex component	protein-coding	0.005000	0.477612	
mm_60914.1	chr7	46796054	46796254	+	1	NA	NA	NA	60	NM_008186	14884	Mm.22700	NM_008186	ENSMUSG00000006599	Gtf2h1	62kDa|AW743425|AW822074|BTF2 p62|C77871|p62	general transcription factor II H, polypeptide 1	protein-coding	0.140000	0.746269	
mm_45788.1	chr5	87424103	87424303	-	1	NA	NA	NA	0	NM_133894	100559	Mm.212589	NM_133894	ENSMUSG00000061906	Ugt2b38	9430041C03Rik|AA986709	UDP glucuronosyltransferase 2 family, polypeptide B38	protein-coding	0.000000	0.407960	
mm_90126.1	chr10	117693668	117693868	+	1	NA	NA	NA	16990	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.000000	0.467662	
mm_126741.1	chr15	85679374	85679574	+	1	NA	NA	NA	-24299	NR_110483	102800312	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0.035000	0.646766	
mm_134086.1	chr16	8783290	8783490	-	1	NA	NA	NA	-45048	NM_001003918	252870	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.035000	0.547264	
mm_86455.1	chr10	4346740	4346940	+	1	NA	NA	NA	41268	NM_001033466	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.090000	0.736318	
mm_116483.1	chr13	43923782	43923982	-	1	NA	NA	NA	138770	NM_001289915	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.025000	0.512438	
mm_62186.1	chr7	97480936	97481136	+	1	NA	NA	NA	80	NM_027256	101861	Mm.27383	NM_027256	ENSMUSG00000025133	Ints4	2610034N24Rik|AA692684|AW493223	integrator complex subunit 4	protein-coding	0.050000	0.557214	
mm_124097.1	chr14	79291894	79292094	-	1	NA	NA	NA	9641	NM_025427	66214	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	0.000000	0.407960	
mm_139464.1	chr17	55954256	55954456	+	1	NA	NA	NA	1733	NM_015766	50498	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	0.045000	0.646766	
mm_107426.1	chr12	35534292	35534492	+	1	NA	NA	NA	597	NM_013464	11622	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0.035000	0.497512	
mm_82566.1	chr9	21075192	21075392	-	1	NA	NA	NA	296	NR_106050	102465656		NR_106050	ENSMUSG00000098907	Mir7082	Gm27933|mmu-mir-7082	microRNA 7082	ncRNA	0.020000	0.417910	
mm_81904.1	chr9	119983051	119983251	+	1	NA	NA	NA	1507	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.075000	0.666667	
mm_48636.1	chr5	145166954	145167154	-	1	NA	NA	NA	50	NM_133735	71799	Mm.277413	NM_133735	ENSMUSG00000029624	Ptcd1	1110069M14Rik	pentatricopeptide repeat domain 1	protein-coding	0.100000	0.621891	
mm_60476.1	chr7	44478168	44478368	+	1	NA	NA	NA	-6249	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.447761	
mm_59324.1	chr7	25306127	25306327	+	1	NA	NA	NA	119	NM_183311	330485	Mm.260740	NM_183311	ENSMUSG00000043843	Tmem145	B930076A02Rik	transmembrane protein 145	protein-coding	0.105000	0.716418	
mm_68830.1	chr7	126200262	126200462	-	1	NA	NA	NA	46	NM_028816	74204	Mm.235663	NM_028816	ENSMUSG00000000131	Xpo6	2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|mKIAA0370	exportin 6	protein-coding	0.110000	0.751244	
mm_17138.1	chr2	24975786	24975986	-	1	NA	NA	NA	-147	NM_146251	241274	Mm.389243	NM_146251	ENSMUSG00000036833	Pnpla7	BC027342|E430013P11Rik|Nre	patatin-like phospholipase domain containing 7	protein-coding	0.025000	0.577114	
mm_114810.1	chr13	91484468	91484668	+	1	NA	NA	NA	23471	NM_024186	66970	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.005000	0.402985	
mm_60599.1	chr7	44516850	44517050	+	1	NA	NA	NA	7719	NM_146189	233199	Mm.358888	NM_146189	ENSMUSG00000038670	Mybpc2	-	myosin binding protein C, fast-type	protein-coding	0.030000	0.522388	
mm_92395.1	chr10	76611732	76611932	-	1	NA	NA	NA	11572	NM_146007	12834	Mm.1949	NM_146007	ENSMUSG00000020241	Col6a2	Col6a-2	collagen, type VI, alpha 2	protein-coding	0.020000	0.621891	
mm_52048.1	chr6	97210623	97210823	+	1	NA	NA	NA	-69	NM_022992	65106	Mm.291014	NM_022992	ENSMUSG00000035199	Arl6ip5	5930404D22Rik|AV001879|Aip-5|Gtrap3-18|addiscin	ADP-ribosylation factor-like 6 interacting protein 5	protein-coding	0.065000	0.577114	
mm_54982.1	chr6	48741342	48741542	-	1	NA	NA	NA	2395	NM_008376	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.010000	0.527363	
mm_78289.1	chr9	22225616	22225816	+	1	NA	NA	NA	4	NM_001164624	235047	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	0.055000	0.587065	
mm_59895.1	chr7	30307235	30307435	+	1	NA	NA	NA	-1418	NM_198027	233065	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	0.005000	0.477612	
mm_169082.1	chr13	3377815	3378015	-	1	NA	NA	NA	-100388	NR_015522	76937	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0.005000	0.457711	
mm_113299.1	chr13	30747691	30747891	+	1	NA	NA	NA	-1442	NM_001347508	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.030000	0.437811	
mm_117847.1	chr13	98694736	98694936	-	1	NA	NA	NA	-5	NM_001025606	380863	Mm.28264	NM_001025606	ENSMUSG00000052485	Tmem171	Gm905	transmembrane protein 171	protein-coding	0.080000	0.701493	
mm_131371.1	chr16	13830499	13830699	+	1	NA	NA	NA	11348	NM_001346111	18203	Mm.380410	NM_010946	ENSMUSG00000022681	Ntan1	PNAA|PNAD	N-terminal Asn amidase	protein-coding	0.025000	0.482587	
mm_124179.1	chr14	93873342	93873542	-	1	NA	NA	NA	15446	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.353234	
mm_153287.1	chr19	37295742	37295942	-	1	NA	NA	NA	-31747	NR_040298	77059	Mm.251476	NR_040298		4931408D14Rik	-	RIKEN cDNA 4931408D14 gene	ncRNA	0.050000	0.432836	
mm_6514.1	chr1	74394566	74394766	-	1	NA	NA	NA	356	NR_029743	387219		NR_029743	ENSMUSG00000065468	Mir26b	Mirn26b|mir-26b|mmu-mir-26b	microRNA 26b	ncRNA	0.025000	0.577114	
mm_47413.1	chr5	123136447	123136647	-	1	NA	NA	NA	-3918	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.030000	0.616915	
mm_29942.1	chr3	132883287	132883487	-	1	NA	NA	NA	-4791	NR_102298	101243624	Mm.306256	NR_102297	ENSMUSG00000106230	Gm29811	-	predicted gene, 29811	ncRNA	0.025000	0.537313	
mm_73086.1	chr8	94513236	94513436	+	1	NA	NA	NA	8290	NR_106040	102466800		NR_106040	ENSMUSG00000098511	Mir7072	Gm27665|mmu-mir-7072	microRNA 7072	ncRNA	0.000000	0.432836	
mm_156817.1	chrX	164139260	164139460	+	1	NA	NA	NA	18	NM_001130513	70008	Mm.13451	NM_027286	ENSMUSG00000015405	Ace2	2010305L05Rik	angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	protein-coding	0.005000	0.432836	-2(CCATTTAAAGTG,+,0.00)
mm_160521.1	chr9	35421038	35421238	+	1	NA	NA	NA	-30938	NM_021339	57810	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	0.085000	0.661692	
mm_170953.1	chr2	5379113	5379313	-	1	NA	NA	NA	-177	NR_030601	100124465		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.055000	0.482587	
mm_56289.1	chr6	91490983	91491183	-	1	NA	NA	NA	17332	NM_028766	74122	Mm.38801	NM_028766	ENSMUSG00000030095	Tmem43	1200015A22Rik|LUMA	transmembrane protein 43	protein-coding	0.010000	0.507463	
mm_122316.1	chr14	36919426	36919626	-	1	NA	NA	NA	9	NM_001347503	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.015000	0.363184	
mm_18280.1	chr2	52424771	52424971	-	1	NA	NA	NA	3	NM_182994	75423	Mm.314378	NM_182994	ENSMUSG00000036093	Arl5a	2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534	ADP-ribosylation factor-like 5A	protein-coding	0.160000	0.796020	
mm_80030.1	chr9	68717639	68717839	+	1	NA	NA	NA	-47607	NR_033299	320440	Mm.483129	NM_177159		9530091C08Rik	-	RIKEN cDNA 9530091C08 gene	ncRNA	0.015000	0.447761	30(GACCTTAAGAGG,-,0.00)
mm_160028.1	chr6	130382404	130382604	-	1	NA	NA	NA	-1696	NM_053152	93969	Mm.333431	NM_053152		Klra22	Ly49v	killer cell lectin-like receptor subfamily A, member 22	protein-coding	0.015000	0.417910	
mm_167095.1	chr7	109010731	109010931	+	1	NA	NA	NA	-49	NM_021885	22141	Mm.439722	NM_021885	ENSMUSG00000031028	Tub	rd5|tub	tubby candidate gene	protein-coding	0.145000	0.791045	
mm_144248.1	chr18	10812514	10812714	+	1	NA	NA	NA	-27062	NR_029781	723959		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	0.000000	0.378109	-36(TGTTCTAAAAGG,-,0.00)
mm_120375.1	chr14	64587936	64588136	+	1	NA	NA	NA	-79	NR_040709	268755	Mm.194050	NR_040709	ENSMUSG00000097545	Mir124a-1hg	A930011O12Rik|Rncr3|mir-124-1|mir-3078	Mir124-1 host gene (non-protein coding)	ncRNA	0.040000	0.557214	
mm_152033.1	chr19	6084849	6085049	-	1	NA	NA	NA	-58	NM_024231	81909	Mm.289471	NM_024231	ENSMUSG00000024792	Zfpl1	1500015B20Rik	zinc finger like protein 1	protein-coding	0.085000	0.626866	
mm_71261.1	chr8	40917810	40918010	+	1	NA	NA	NA	-8323	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.010000	0.398010	3(TGCTTTTAAAGG,-,0.00),4(GCTTTTAAAGGA,+,0.00),5(CTTTTAAAGGAC,+,0.00)
mm_67632.1	chr7	84275459	84275659	-	1	NA	NA	NA	-123666	NM_133722	70178	Mm.23914	NM_133722	ENSMUSG00000038459	Abhd17c	2210412D01Rik|AL023007|Fam108c|Fam108c1	abhydrolase domain containing 17C	protein-coding	0.010000	0.552239	
mm_37637.1	chr4	127534576	127534776	-	1	NA	NA	NA	-176512	NM_010291	14622	Mm.26859	NM_010291	ENSMUSG00000042357	Gjb5	Cnx31.1|Cx31.1|Gjb-5	gap junction protein, beta 5	protein-coding	0.015000	0.432836	-95(TCCTTTATAAGA,-,0.00)
mm_29341.1	chr3	108226481	108226681	-	1	NA	NA	NA	18	NM_008596	17306	Mm.316885	NM_008596	ENSMUSG00000027887	Sypl2	AI552439|Mg29	synaptophysin-like 2	protein-coding	0.120000	0.726368	
mm_30048.1	chr3	136167066	136167266	-	1	NA	NA	NA	158900	NM_001310749	242248	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0.000000	0.318408	48(GCCTTTTTAAGT,-,0.00)
mm_165928.1	chr4	63344398	63344598	+	1	NA	NA	NA	-58	NM_008768	18405	Mm.4777	NM_008768	ENSMUSG00000039196	Orm1	Agp-1|Agp-2|Orm-1	orosomucoid 1	protein-coding	0.010000	0.527363	
mm_25585.1	chr3	116885734	116885934	+	1	NA	NA	NA	24154	NM_009146	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.005000	0.522388	
mm_100131.1	chr11	115974468	115974668	+	1	NA	NA	NA	-157	NM_001005608	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.020000	0.502488	
mm_122811.1	chr14	54577469	54577669	-	1	NA	NA	NA	92	NM_010590	16475	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	0.105000	0.686567	
mm_22003.1	chr2	167753826	167754026	-	1	NA	NA	NA	62749	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.025000	0.567164	
mm_85497.1	chr9	106136299	106136499	-	1	NA	NA	NA	-17725	NR_029549	387153		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	0.000000	0.427861	-72(ACTTTTATGGCA,+,0.00)
mm_5159.1	chr1	10009029	10009229	-	1	NA	NA	NA	7	NR_110971	69312	Mm.386795	NM_027033	ENSMUSG00000025916	Ppp1r42	1700011J18Rik|4930418G15Rik|Lrrc67|TLRR	protein phosphatase 1, regulatory subunit 42	protein-coding	0.060000	0.606965	
mm_138817.1	chr17	39847226	39847426	+	1	NA	NA	NA	4329	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.085000	0.492537	
mm_16243.1	chr2	173157897	173158097	+	1	NA	NA	NA	4924	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.000000	0.502488	
mm_48282.1	chr5	138171161	138171361	-	1	NA	NA	NA	601	NM_008568	17220	Mm.378965	NM_008568	ENSMUSG00000029730	Mcm7	AI747533|Mcmd7|mCDC47	minichromosome maintenance complex component 7	protein-coding	0.100000	0.636816	
mm_80282.1	chr9	73044714	73044914	+	1	NA	NA	NA	4	NM_001301230	11891	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	0.075000	0.661692	
mm_152237.1	chr19	8711779	8711979	-	1	NA	NA	NA	2018	NM_008577	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.015000	0.467662	
mm_43175.1	chr5	127631966	127632166	+	1	NA	NA	NA	-196	NM_177005	319804	Mm.237888	NM_177005	ENSMUSG00000049971	Glt1d1	5730455A04Rik	glycosyltransferase 1 domain containing 1	protein-coding	0.025000	0.661692	
mm_121408.1	chr14	119321547	119321747	+	1	NA	NA	NA	183382	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.010000	0.467662	
mm_120948.1	chr14	76721995	76722195	+	1	NA	NA	NA	44527	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.020000	0.422886	
mm_109382.1	chr12	109718721	109718921	+	1	NA	NA	NA	67	NR_030446	751522		NR_030446	ENSMUSG00000070105	Mir495	Mirn495|mir-495|mmu-mir-495	microRNA 495	ncRNA	0.025000	0.487562	
mm_141972.1	chr17	35150472	35150672	-	1	NA	NA	NA	14305	NM_001199044	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.010000	0.592040	
mm_51208.1	chr6	71329665	71329865	+	1	NA	NA	NA	6953	NM_009858	12526	Mm.333148	NM_009858	ENSMUSG00000053044	Cd8b1	Cd8b|Ly-3|Ly-C|Lyt-3	CD8 antigen, beta chain 1	protein-coding	0.005000	0.457711	
mm_87725.1	chr10	60106338	60106538	+	1	NA	NA	NA	181	NM_052994	94214	Mm.153429	NM_052994	ENSMUSG00000058297	Spock2	AA407235|Gcap26|mKIAA0275	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	protein-coding	0.070000	0.671642	
mm_118581.1	chr14	19811185	19811385	+	1	NA	NA	NA	12538	NM_026528	68045	Mm.21932	NM_026528	ENSMUSG00000021807	2700060E02Rik	-	RIKEN cDNA 2700060E02 gene	protein-coding	0.005000	0.353234	
mm_108390.1	chr12	80947397	80947597	+	1	NA	NA	NA	1998	NM_001347415	20384	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0.050000	0.467662	
mm_2216.1	chr1	89791166	89791366	+	1	NA	NA	NA	-107374	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.000000	0.437811	
mm_3810.1	chr1	158362453	158362653	+	1	NA	NA	NA	249	NM_001205204	11899	Mm.329586	NM_007495	ENSMUSG00000026587	Astn1	Astn|GC14|mKIAA0289	astrotactin 1	protein-coding	0.060000	0.726368	
mm_158904.1	chr1	36367951	36368151	-	1	NA	NA	NA	1130	NM_172652	226976	Mm.24734	NM_172652	ENSMUSG00000010453	Kansl3	4632411B12Rik|4932435K23|AI431067|AI647574|C85723|Kiaa1310|mKIAA1310	KAT8 regulatory NSL complex subunit 3	protein-coding	0.010000	0.477612	
mm_158152.1	chrX	103475501	103475701	-	1	NA	NA	NA	7632	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.020000	0.442786	-23(CTCTTAATAGGC,+,0.00)
mm_154932.1	chrX	35888628	35888828	+	1	NA	NA	NA	-104	NM_001009947	75974	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	0.075000	0.691542	
mm_168356.1	chr1	114182497	114182697	-	1	NA	NA	NA	-1502540	NM_001077425	636808	Mm.101576	NM_001077425	ENSMUSG00000070695	Cntnap5a	Caspr5-1|EG636808	contactin associated protein-like 5A	protein-coding	0.030000	0.567164	
mm_100176.1	chr11	116533867	116534067	+	1	NA	NA	NA	729	NM_025367	20698	Mm.20944	NM_011451	ENSMUSG00000061878	Sphk1	1110006G24Rik|Sk1|Spk1	sphingosine kinase 1	protein-coding	0.050000	0.661692	
mm_55072.1	chr6	49110887	49111087	-	1	NA	NA	NA	37192	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.005000	0.582090	
mm_133436.1	chr16	87698913	87699113	+	1	NA	NA	NA	59	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.145000	0.741294	
mm_122398.1	chr14	40994336	40994536	-	1	NA	NA	NA	12484	NM_001316739	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.020000	0.522388	
mm_54891.1	chr6	44083257	44083457	-	1	NA	NA	NA	-417079	NM_013861	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.010000	0.457711	
mm_59026.1	chr7	19301143	19301343	+	1	NA	NA	NA	8802	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.030000	0.422886	
mm_36974.1	chr4	109476537	109476737	-	1	NA	NA	NA	-132	NM_013876	29864	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0.110000	0.751244	
mm_97638.1	chr11	79051239	79051439	+	1	NA	NA	NA	27742	NR_045873	790910	Mm.440410	NR_045873		Gm11201	ENSMUSG00000072637|OTTMUSG00000000169	predicted gene 11201	ncRNA	0.045000	0.572139	
mm_120048.1	chr14	56647416	56647616	+	1	NA	NA	NA	-20732	NM_023773	75339	Mm.152466	NM_023773	ENSMUSG00000079184	Mphosph8	1500035L22Rik|4930548G07Rik|AU040635	M-phase phosphoprotein 8	protein-coding	0.015000	0.537313	
mm_156552.1	chrX	151780532	151780732	+	1	NA	NA	NA	-22650	NM_021523	59026	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	0.005000	0.422886	-69(CCTTTTAGACAA,+,0.00)
mm_7592.1	chr1	125435602	125435802	-	1	NA	NA	NA	25	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.135000	0.751244	
mm_99242.1	chr11	101078329	101078529	+	1	NA	NA	NA	18	NM_010475	15485	Mm.188939	NM_010475	ENSMUSG00000019301	Hsd17b1	17HSDB1|17beta-HSD|E2DH|Hsd17ba	hydroxysteroid (17-beta) dehydrogenase 1	protein-coding	0.035000	0.557214	
mm_78430.1	chr9	31386111	31386311	+	1	NA	NA	NA	19	NM_172766	235134	Mm.238146	NM_172766	ENSMUSG00000042185	Nfrkb	A530090G11Rik	nuclear factor related to kappa B binding protein	protein-coding	0.140000	0.731343	
mm_66864.1	chr7	56901348	56901548	-	1	NA	NA	NA	485423	NM_008074	14407	Mm.434343	NM_008074	ENSMUSG00000055026	Gabrg3	B230362M20Rik|Gabrg-3	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3	protein-coding	0.000000	0.288557	
mm_134203.1	chr16	11134512	11134712	-	1	NA	NA	NA	-80	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.125000	0.711443	
mm_27688.1	chr3	65974637	65974837	-	1	NA	NA	NA	-16512	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.070000	0.626866	
mm_36210.1	chr4	62468792	62468992	-	1	NA	NA	NA	2003	NM_001290522	71354	Mm.155573	NM_023597	ENSMUSG00000028391	Wdr31	5430402I10Rik|spWD	WD repeat domain 31	protein-coding	0.020000	0.442786	
mm_24014.1	chr3	87435709	87435909	+	1	NA	NA	NA	27	NM_001113238	329693	Mm.331122	NM_183222	ENSMUSG00000048031	Fcrl5	Fcrh3|mBXMH2	Fc receptor-like 5	protein-coding	0.010000	0.437811	
mm_115278.1	chr13	111715833	111716033	+	1	NA	NA	NA	29755	NM_172593	218613	Mm.31012	NM_172593	ENSMUSG00000032727	Mier3	5730509D14|AU015422|D130064H19Rik	MIER family member 3	protein-coding	0.005000	0.333333	
mm_137141.1	chr17	23617206	23617406	+	1	NA	NA	NA	16480	NM_001289482	332221	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	0.030000	0.552239	
mm_82085.1	chr9	123034642	123034842	+	1	NA	NA	NA	1	NM_177911	331046	Mm.195309	NM_177911	ENSMUSG00000025787	Tgm4	9530008N10Rik|Eapa1|TGP	transglutaminase 4 (prostate)	protein-coding	0.010000	0.532338	-34(GCATATAAAAAG,-,0.00)
mm_62385.1	chr7	100838944	100839144	+	1	NA	NA	NA	24369	NM_177073	320100	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.000000	0.537313	
mm_141706.1	chr17	33999840	34000040	-	1	NA	NA	NA	393	NM_001001892	14972	Mm.422886	NM_001001892	ENSMUSG00000061232	H2-K1	H-2K|H-2K(d)|H2-K|K-f	histocompatibility 2, K1, K region	protein-coding	0.140000	0.691542	
mm_124702.1	chr15	6540164	6540364	+	1	NA	NA	NA	-39583	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.015000	0.507463	
mm_19058.1	chr2	77280970	77281170	-	1	NA	NA	NA	-478	NM_175465	228071	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.010000	0.497512	
mm_54916.1	chr6	47799129	47799329	-	1	NA	NA	NA	4423	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.020000	0.487562	62(ACCTTTATAGGG,+,0.00),62(ACCTTTATAGGG,-,0.00),64(CTTTATAGGGCG,+,0.00)
mm_59346.1	chr7	25627089	25627289	+	1	NA	NA	NA	-435	NM_001036740	232984	Mm.192369	NM_146184	ENSMUSG00000059479	B3gnt8	B3galt7|B7galt7|BC025206	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8	protein-coding	0.045000	0.562189	
mm_119480.1	chr14	47319600	47319800	+	1	NA	NA	NA	21386	NM_178684	218975	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	0.010000	0.328358	52(CTTTTTATAATC,+,0.00)
mm_85601.1	chr9	107554304	107554504	-	1	NA	NA	NA	-179	NM_019713	56289	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0.085000	0.646766	
mm_118027.1	chr13	101538122	101538322	-	1	NA	NA	NA	-140642	NR_046187	78136	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	0.005000	0.472637	
mm_113335.1	chr13	31625652	31625852	+	1	NA	NA	NA	-64	NM_010225	14238	Mm.125548	NM_010225	ENSMUSG00000038402	Foxf2	FREAC2|Fkh20|LUN	forkhead box F2	protein-coding	0.090000	0.681592	
mm_130.1	chr1	10039677	10039877	+	1	NA	NA	NA	1559	NM_026493	211660	Mm.244046	NM_026493	ENSMUSG00000056763	Cspp1	2310020J12Rik|4930413O22Rik|AA387550|BC055915|Cspp2|Cspp3	centrosome and spindle pole associated protein 1	protein-coding	0.130000	0.786070	
mm_98262.1	chr11	88950395	88950595	+	1	NA	NA	NA	4947	NM_029023	74617	Mm.34126	NM_029023	ENSMUSG00000000278	Scpep1	2410018F01Rik|4833411K15Rik|AI957256|Risc	serine carboxypeptidase 1	protein-coding	0.005000	0.512438	
mm_54191.1	chr6	24373174	24373374	-	1	NA	NA	NA	141793	NM_172535	214704	Mm.61131	NM_172535	ENSMUSG00000046192	Iqub	4932408B21Rik|Trs4	IQ motif and ubiquitin domain containing	protein-coding	0.020000	0.557214	
mm_146485.1	chr18	90510141	90510341	+	1	NA	NA	NA	87	NM_198295	67988	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.090000	0.671642	
mm_119359.1	chr14	41115155	41115355	+	1	NA	NA	NA	10222	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.000000	0.472637	64(CCTTTTATGTGT,+,0.00)
mm_105824.1	chr11	113155049	113155249	-	1	NA	NA	NA	46689	NR_015556	72386	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.005000	0.492537	
mm_118397.1	chr13	119376166	119376366	-	1	NA	NA	NA	32745	NM_008710	18115	Mm.132584	NM_008710	ENSMUSG00000025453	Nnt	4930423F13Rik|AI323702|BB168308	nicotinamide nucleotide transhydrogenase	protein-coding	0.005000	0.348259	-66(TTCTTTAAAGGC,+,0.00),-66(TTCTTTAAAGGC,-,0.00)
mm_113719.1	chr13	43653471	43653671	+	1	NA	NA	NA	37774	NM_183204	328234	Mm.40588	NM_183204	ENSMUSG00000044164	Rnf182	C630023L15Rik	ring finger protein 182	protein-coding	0.015000	0.368159	
mm_155501.1	chrX	73786910	73787110	+	1	NA	NA	NA	-18	NM_001166480	20832	Mm.831	NM_009279	ENSMUSG00000002014	Ssr4	AW743063|C78062|Trap	signal sequence receptor, delta	protein-coding	0.080000	0.616915	
mm_160739.1	chr10	79970697	79970897	+	1	NA	NA	NA	73	NM_130455	170483	Mm.391566	NM_130455	ENSMUSG00000035745	Grin3b	GluN3B|NR3B	glutamate receptor, ionotropic, NMDA3B	protein-coding	0.040000	0.621891	
mm_98838.1	chr11	97440092	97440292	+	1	NA	NA	NA	-9968	NM_021493	58996	Mm.394118	NM_021493	ENSMUSG00000049807	Arhgap23	A330041B18Rik	Rho GTPase activating protein 23	protein-coding	0.140000	0.810945	
mm_153147.1	chr19	34250975	34251175	-	1	NA	NA	NA	4298	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.000000	0.328358	
mm_27659.1	chr3	65200466	65200666	-	1	NA	NA	NA	12463	NM_001289450	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.000000	0.228856	
mm_68851.1	chr7	126369329	126369529	-	1	NA	NA	NA	139	NM_010689	16797	Mm.10280	NM_010689	ENSMUSG00000030742	Lat	p36-38|pp36	linker for activation of T cells	protein-coding	0.045000	0.661692	
mm_45567.1	chr5	73256428	73256628	-	1	NA	NA	NA	90	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.095000	0.626866	22(TTCCTTAAAGGG,-,0.00),24(CCTTAAAGGGGA,+,0.00)
mm_113378.1	chr13	33013835	33014035	+	1	NA	NA	NA	9394	NM_009256	20723	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0.015000	0.502488	
mm_17875.1	chr2	34958035	34958235	-	1	NA	NA	NA	3637	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.020000	0.532338	
mm_61647.1	chr7	80400292	80400492	+	1	NA	NA	NA	2420	NM_011046	18550	Mm.5241	NM_011046	ENSMUSG00000030530	Furin	9130404I01Rik|Fur|PACE|Pcsk3|SPC1	furin (paired basic amino acid cleaving enzyme)	protein-coding	0.005000	0.572139	-27(CCCCATAAAGGG,-,0.00),-25(CCATAAAGGGCC,+,0.00)
mm_17276.1	chr2	26091926	26092126	-	1	NA	NA	NA	370	NM_001037098	67991	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.065000	0.606965	-60(GTTTTTAAAGCT,+,0.00)
mm_64545.1	chr7	144320975	144321175	+	1	NA	NA	NA	36690	NM_001081370	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.005000	0.477612	
mm_164426.1	chr16	45382592	45382792	-	1	NA	NA	NA	26361	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.000000	0.373134	
mm_123973.1	chr14	75131526	75131726	-	1	NA	NA	NA	503	NM_001247984	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.030000	0.472637	
mm_124467.1	chr14	121294317	121294517	-	1	NA	NA	NA	84813	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.010000	0.577114	
mm_164046.1	chr14	98109933	98110133	-	1	NA	NA	NA	59732	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.010000	0.338308	
mm_151237.1	chr19	53800758	53800958	+	1	NA	NA	NA	-91373	NM_011050	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.020000	0.562189	
mm_55584.1	chr6	71411491	71411691	-	1	NA	NA	NA	29046	NM_024288	68477	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.000000	0.263682	
mm_158753.1	chrX	166440556	166440756	-	1	NA	NA	NA	48	NM_177429	237222	Mm.247480	NM_177429	ENSMUSG00000040586	Ofd1	Cxorf5|DXGgc7e|ORF2	oral-facial-digital syndrome 1 gene homolog (human)	protein-coding	0.130000	0.711443	
mm_75252.1	chr8	40510378	40510578	-	1	NA	NA	NA	1276	NM_001271543	18983	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0.020000	0.308458	-1(GGCTTGAAATGG,-,0.00)
mm_56070.1	chr6	86793452	86793652	-	1	NA	NA	NA	32	NM_013471	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.065000	0.651741	
mm_1226.1	chr1	62754734	62754934	+	1	NA	NA	NA	39898	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.015000	0.422886	-17(GGTTATTAAAGA,-,0.00)
mm_132729.1	chr16	43630179	43630379	+	1	NA	NA	NA	-10376	NR_030576	100124467		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.005000	0.417910	
mm_6554.1	chr1	75137314	75137514	-	1	NA	NA	NA	-3524	NM_194333	22626	Mm.68157	NM_194333	ENSMUSG00000026205	Slc23a3	SVCT3|Yspl1	solute carrier family 23 (nucleobase transporters), member 3	protein-coding	0.025000	0.611940	
mm_89668.1	chr10	97506397	97506597	+	1	NA	NA	NA	24166	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.010000	0.393035	
mm_89829.1	chr10	106141108	106141308	+	1	NA	NA	NA	299729	NM_025602	52713	Mm.339224	NM_025602	ENSMUSG00000019897	Ccdc59	2300004H16Rik|D10Ertd718e	coiled-coil domain containing 59	protein-coding	0.005000	0.452736	
mm_54273.1	chr6	29028224	29028424	-	1	NA	NA	NA	5705	NR_029567	387237		NR_029567	ENSMUSG00000065469	Mir129-1	Mirn129-1|Mirn129b|miR-129b|mir-129-1	microRNA 129-1	ncRNA	0.010000	0.497512	
mm_65335.1	chr7	24978355	24978555	-	1	NA	NA	NA	-5727	NM_010261	14470	Mm.22473	NM_010261	ENSMUSG00000003380	Rabac1	2310040I06Rik|Gbpap1|PRA1|prenylin	Rab acceptor 1 (prenylated)	protein-coding	0.030000	0.631841	
mm_50075.1	chr6	41339706	41339906	+	1	NA	NA	NA	-14299	NM_001038996	436522	Mm.443385	NM_001038996	ENSMUSG00000071521	Try10	-	trypsin 10	protein-coding	0.005000	0.422886	
mm_7468.1	chr1	120484747	120484947	-	1	NA	NA	NA	20237	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.005000	0.582090	
mm_158508.1	chrX	142852502	142852702	-	1	NA	NA	NA	113602	NR_030523	723976		NR_030523	ENSMUSG00000076011	Mir652	Mirn652|miRX|mmu-mir-652	microRNA 652	ncRNA	0.005000	0.288557	16(CCTTTTAAATGT,+,0.00)
mm_79286.1	chr9	51186040	51186240	+	1	NA	NA	NA	-27550	NM_011136	18985	Mm.897	NM_011136	ENSMUSG00000032053	Pou2af1	BOB.1|Bob-1|Bob1|OBF-1|OBF.1|OCA-B|OCAB	POU domain, class 2, associating factor 1	protein-coding	0.015000	0.447761	
mm_143575.1	chr17	74316065	74316265	-	1	NA	NA	NA	46	NM_001146224	66310	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0.095000	0.666667	
mm_58625.1	chr7	5079384	5079584	+	1	NA	NA	NA	-751	NM_010147	13854	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0.015000	0.621891	
mm_65935.1	chr7	30353253	30353453	-	1	NA	NA	NA	9419	NM_175478	233067	Mm.23157	NM_175478	ENSMUSG00000036957	Lrfn3	A530045B06Rik|SALM4	leucine rich repeat and fibronectin type III domain containing 3	protein-coding	0.015000	0.557214	
mm_160835.1	chr11	48902049	48902249	-	1	NA	NA	NA	3	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.005000	0.442786	7(CTCCCTTTAAGG,-,0.00),9(CCCTTTAAGGAC,+,0.00)
mm_53847.1	chr6	149129552	149129752	+	1	NA	NA	NA	-11861	NM_001252096	320204	Mm.274099	NM_177101	ENSMUSG00000039958	Etfbkmt	4833442J19Rik|AI256744|ETFB-KMT|Mettl20	electron transfer flavoprotein beta subunit lysine methyltransferase	protein-coding	0.005000	0.447761	
mm_2948.1	chr1	132342255	132342455	+	1	NA	NA	NA	25593	NM_001311108	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.010000	0.462687	72(ACTTTTATAAGG,-,0.00)
mm_106046.1	chr11	116079694	116079894	-	1	NA	NA	NA	-1833	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.030000	0.572139	
mm_11507.1	chr2	32567839	32568039	+	1	NA	NA	NA	-2919	NM_010073	13481	Mm.22001	NM_010073	ENSMUSG00000026810	Dpm2	AW557993|R75484	dolichol-phosphate (beta-D) mannosyltransferase 2	protein-coding	0.000000	0.582090	
mm_101174.1	chr11	16990062	16990262	-	1	NA	NA	NA	18556	NM_019549	56193	Mm.98232	NM_019549	ENSMUSG00000020120	Plek	2010300B13Rik	pleckstrin	protein-coding	0.015000	0.522388	
mm_41674.1	chr5	99682320	99682520	+	1	NA	NA	NA	46640	NR_030692	319818	Mm.295233	NR_030692	ENSMUSG00000089809	A930011G23Rik	-	RIKEN cDNA A930011G23 gene	ncRNA	0.020000	0.462687	
mm_4506.1	chr1	174040916	174041116	+	1	NA	NA	NA	-917	NM_146717	258712	Mm.223146	NM_146717	ENSMUSG00000045381	Olfr433	MOR123-1	olfactory receptor 433	protein-coding	0.000000	0.402985	
mm_78772.1	chr9	43743640	43743840	+	1	NA	NA	NA	-836	NM_021424	58235	Mm.335096	NM_021424	ENSMUSG00000032012	Nectin1	AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1	nectin cell adhesion molecule 1	protein-coding	0.075000	0.671642	
mm_82767.1	chr9	26922946	26923146	-	1	NA	NA	NA	35	NM_001281475	382064	Mm.335028	NM_001177509	ENSMUSG00000079644	Gm1110	-	predicted gene 1110	protein-coding	0.035000	0.587065	
mm_11035.1	chr2	26933956	26934156	+	1	NA	NA	NA	-13	NM_198628	279029	Mm.330079	NM_198628	ENSMUSG00000049897	Stkld1	Gm711|Sgk071	serine/threonine kinase-like domain containing 1	protein-coding	0.040000	0.601990	
mm_79536.1	chr9	57825832	57826032	+	1	NA	NA	NA	8302	NM_019689	56380	Mm.425588	NM_019689	ENSMUSG00000004661	Arid3b	Bdp|Dri2	AT rich interactive domain 3B (BRIGHT-like)	protein-coding	0.015000	0.512438	
mm_58281.1	chr6	145862327	145862527	-	1	NA	NA	NA	2993	NM_001271768	79362	Mm.154529	NM_024469	ENSMUSG00000030256	Bhlhe41	6430520M22Rik|Bhlhb2l|Bhlhb3|DEC2|Sharp1	basic helix-loop-helix family, member e41	protein-coding	0.005000	0.462687	
mm_57258.1	chr6	123285097	123285297	-	1	NA	NA	NA	4674	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.248756	-17(ATTTTTAAAAGG,-,0.00),-16(TTTTTAAAAGGG,+,0.00)
mm_12836.1	chr2	80643885	80644085	+	1	NA	NA	NA	4721	NM_001190179	69482	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	0.005000	0.383085	
mm_95837.1	chr11	57011663	57011863	+	1	NA	NA	NA	145	NM_008165	14799	Mm.4920	NM_008165	ENSMUSG00000020524	Gria1	2900051M01Rik|Glr-1|Glr1|GluA1|GluR-A|GluRA|Glur-1|Glur1|HIPA1|gluR-K1	glutamate receptor, ionotropic, AMPA1 (alpha 1)	protein-coding	0.040000	0.587065	
mm_85959.1	chr9	112124729	112124929	-	1	NA	NA	NA	-6118	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.020000	0.611940	
mm_121111.1	chr14	101729833	101730033	+	1	NA	NA	NA	5	NM_201529	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.060000	0.611940	
mm_20283.1	chr2	126894004	126894204	-	1	NA	NA	NA	8281	NR_106202	102466258		NR_106202	ENSMUSG00000098896	Mir3473g	Gm27751|mmu-mir-3473g	microRNA 3473g	ncRNA	0.005000	0.393035	
mm_4296.1	chr1	171777082	171777282	+	1	NA	NA	NA	10050	NM_013730	27218	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	0.015000	0.547264	
mm_40401.1	chr5	52974790	52974990	+	1	NA	NA	NA	17402	NR_040413	75954	Mm.258937	NR_040413	ENSMUSG00000106352	5033403H07Rik	-	RIKEN cDNA 5033403H07 gene	ncRNA	0.000000	0.502488	
mm_85383.1	chr9	103226859	103227059	-	1	NA	NA	NA	3327	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.050000	0.577114	
mm_164084.1	chr15	5041704	5041904	+	1	NA	NA	NA	21969	NM_001243837	109828	Mm.208034	NM_001243837	ENSMUSG00000079105	C7	A530026G17|Gm1238	complement component 7	protein-coding	0.005000	0.353234	-50(CCTCATATAGCA,+,0.00)
mm_122115.1	chr14	31001250	31001450	-	1	NA	NA	NA	-43	NM_001165930	76485	Mm.8766	NM_029626	ENSMUSG00000021916	Glt8d1	2410004H05Rik|5430414N14Rik|AI450005	glycosyltransferase 8 domain containing 1	protein-coding	0.115000	0.606965	
mm_116309.1	chr13	36971501	36971701	-	1	NA	NA	NA	77612	NM_028784	74145	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0.005000	0.323383	0(GCTTATAGAGAT,+,0.00)
mm_124286.1	chr14	103051330	103051530	-	1	NA	NA	NA	4418	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.025000	0.527363	
mm_124187.1	chr14	96518985	96519185	-	1	NA	NA	NA	-51	NM_053105	93688	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding	0.020000	0.487562	
mm_117960.1	chr13	99447535	99447735	-	1	NA	NA	NA	-34809	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.020000	0.601990	
mm_164669.1	chr17	45487303	45487503	+	1	NA	NA	NA	-12465	NM_027649	71020	Mm.44257	NM_027649	ENSMUSG00000023935	Spats1	1700011H05Rik|4933400B06Rik|Daip2|Ddip|Srsp1	spermatogenesis associated, serine-rich 1	protein-coding	0.015000	0.542289	
mm_28788.1	chr3	95995716	95995916	-	1	NA	NA	NA	23	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.160000	0.825871	
mm_165830.1	chr3	152120005	152120205	-	1	NA	NA	NA	45795	NM_016867	54120	Mm.97	NM_016867	ENSMUSG00000039131	Gipc2	2200002N01Rik|AU021850|Semcap2	GIPC PDZ domain containing family, member 2	protein-coding	0.015000	0.432836	
mm_61875.1	chr7	89509923	89510123	+	1	NA	NA	NA	7563	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.040000	0.547264	
mm_140643.1	chr17	12675697	12675897	-	1	NA	NA	NA	41	NM_009202	20517	Mm.594	NM_009202	ENSMUSG00000023829	Slc22a1	Lx1|Oct1|Orct|Orct1	solute carrier family 22 (organic cation transporter), member 1	protein-coding	0.030000	0.507463	
mm_165.1	chr1	12807768	12807968	+	1	NA	NA	NA	89323	NM_172294	240725	Mm.45563	NM_172294	ENSMUSG00000016918	Sulf1	AI467640|AW121680|mKIAA1077	sulfatase 1	protein-coding	0.010000	0.398010	
mm_51446.1	chr6	80192469	80192669	+	1	NA	NA	NA	172926	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.010000	0.373134	
mm_56562.1	chr6	101377136	101377336	-	1	NA	NA	NA	661	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.130000	0.666667	
mm_17452.1	chr2	28555982	28556182	-	1	NA	NA	NA	7321	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.005000	0.522388	
mm_70352.1	chr8	5117238	5117438	+	1	NA	NA	NA	-12051	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.025000	0.437811	
mm_91149.1	chr10	20205811	20206011	-	1	NA	NA	NA	-2528	NM_001101561	621697	Mm.440587	NM_001101561		Rpl32l	EG621697|Gm6251	ribosomal protein L32-like	protein-coding	0.005000	0.507463	
mm_10613.1	chr2	19199156	19199356	+	1	NA	NA	NA	138	NM_001081083	70882	Mm.276696	NM_001081083	ENSMUSG00000037683	Armc3	4921513G22Rik	armadillo repeat containing 3	protein-coding	0.040000	0.542289	
mm_158983.1	chr1	130800616	130800816	+	1	NA	NA	NA	-186	NM_001170632	64435	Mm.31821	NM_144960	ENSMUSG00000026415	Fcamr	-	Fc receptor, IgA, IgM, high affinity	protein-coding	0.025000	0.517413	
mm_169278.1	chr1	39367793	39367993	+	1	NA	NA	NA	42	NM_001252218	114641	Mm.379302	NM_053257	ENSMUSG00000073702	Rpl31	Dts	ribosomal protein L31	protein-coding	0.105000	0.646766	
mm_33092.1	chr4	124695863	124696063	+	1	NA	NA	NA	-2409	NM_026031	67205	Mm.259121	NM_026031	ENSMUSG00000028907	Utp11l	2700082D03Rik|CGI-94|Cgi94|Utp11	UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast)	protein-coding	0.025000	0.497512	
mm_73531.1	chr8	108637935	108638135	+	1	NA	NA	NA	-53358	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.005000	0.412935	-52(CCTCATAAAGGC,+,0.00)
mm_8292.1	chr1	143094525	143094725	-	1	NA	NA	NA	-546072	NM_020025	26878	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.030000	0.452736	
mm_71216.1	chr8	40894665	40894865	+	1	NA	NA	NA	-31468	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.000000	0.373134	
mm_90536.1	chr10	128088302	128088502	+	1	NA	NA	NA	3116	NR_030442	751518		NR_030442	ENSMUSG00000093245	Mir677	Mirn677|mir-677|mmu-mir-677	microRNA 677	ncRNA	0.010000	0.517413	
mm_3658.1	chr1	153300665	153300865	+	1	NA	NA	NA	32021	NM_010683	226519	Mm.1249	NM_010683	ENSMUSG00000026478	Lamc1	Lamb2	laminin, gamma 1	protein-coding	0.015000	0.482587	
mm_103320.1	chr11	73198897	73199097	-	1	NA	NA	NA	22	NM_031251	83429	Mm.259852	NM_031251	ENSMUSG00000005949	Ctns	AI195360|AW049661	cystinosis, nephropathic	protein-coding	0.045000	0.577114	
mm_163146.1	chr11	82892032	82892232	+	1	NA	NA	NA	-13	NM_030224	78919	Mm.286733	NM_030224	ENSMUSG00000018844	Fndc8	4930466G16Rik	fibronectin type III domain containing 8	protein-coding	0.020000	0.562189	
mm_47832.1	chr5	134306487	134306687	-	1	NA	NA	NA	8173	NM_001080746	14886	Mm.261570	NM_010365	ENSMUSG00000060261	Gtf2i	6030441I21Rik|BAP-135|Diws1t|GtfII-I|Spin|TFII-I|WBSCR6	general transcription factor II I	protein-coding	0.015000	0.507463	
mm_133822.1	chr16	95769836	95770036	+	1	NA	NA	NA	67529	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.035000	0.577114	
mm_154340.1	chrM	4572	4772	+	1	NA	NA	NA	NA	NA									0.000000	0.323383	
mm_62667.1	chr7	108950379	108950579	+	1	NA	NA	NA	16064	NM_025344	66085	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0.105000	0.631841	
mm_46819.1	chr5	113138630	113138830	-	1	NA	NA	NA	-145	NM_001347397	243219	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.070000	0.606965	
mm_73418.1	chr8	106059573	106059773	+	1	NA	NA	NA	70	NM_010901	18021	Mm.383185	NM_010901	ENSMUSG00000031902	Nfatc3	C80703|D8Ertd281e|NFAT4|NFATx	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3	protein-coding	0.155000	0.776119	
mm_90003.1	chr10	112271574	112271774	+	1	NA	NA	NA	551	NM_001025581	268345	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0.035000	0.572139	
mm_133748.1	chr16	94328332	94328532	+	1	NA	NA	NA	10	NM_133229	170765	Mm.42604	NM_133229	ENSMUSG00000022941	Ripply3	Dscr6	ripply transcriptional repressor 3	protein-coding	0.120000	0.726368	-32(GTTTTTAAACCT,+,0.00)
mm_140301.1	chr17	85621215	85621415	+	1	NA	NA	NA	481	NM_011381	20473	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0.115000	0.666667	
mm_153094.1	chr19	32673760	32673960	-	1	NA	NA	NA	38438	NM_026487	67979	Mm.27123	NM_026487	ENSMUSG00000013662	Atad1	4921525H23Rik|AW107648|Thorase	ATPase family, AAA domain containing 1	protein-coding	0.000000	0.383085	
mm_94149.1	chr10	128743867	128744067	-	1	NA	NA	NA	89	NM_016811	13139	Mm.291235	NM_016811	ENSMUSG00000025357	Dgka	80kDa|AW146112|Dagk1	diacylglycerol kinase, alpha	protein-coding	0.090000	0.696517	
mm_158066.1	chrX	101213352	101213552	-	1	NA	NA	NA	9111	NM_001110311	55988	Mm.206949	NM_018875	ENSMUSG00000046032	Snx12	2610001F05Rik|AW045757|SDP8	sorting nexin 12	protein-coding	0.000000	0.482587	
mm_6675.1	chr1	80340650	80340850	-	1	NA	NA	NA	-60	NM_016716	26554	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.110000	0.741294	
mm_169245.1	chr13	74768347	74768547	-	1	NA	NA	NA	2289	NM_001301156	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.005000	0.383085	
mm_163693.1	chr13	99434624	99434824	-	1	NA	NA	NA	-21898	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.020000	0.502488	
mm_146390.1	chr18	82692871	82693071	+	1	NA	NA	NA	-237	NM_177832	329002	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.140000	0.771144	
mm_10556.1	chr2	16755223	16755423	+	1	NA	NA	NA	258403	NR_040632	75069	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	0.010000	0.323383	-84(GCTTATATAGGT,+,0.00)
mm_62170.1	chr7	97332221	97332421	+	1	NA	NA	NA	-2	NM_001039039	622320	Mm.334029	NM_001039039	ENSMUSG00000044952	Kctd21	EG622320	potassium channel tetramerisation domain containing 21	protein-coding	0.110000	0.761194	
mm_67186.1	chr7	73939978	73940178	-	1	NA	NA	NA	73604	NM_009181	20450	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0.005000	0.432836	66(AGGCTTATAAGC,-,0.00),68(GCTTATAAGCTG,+,0.00)
mm_20546.1	chr2	131068518	131068718	-	1	NA	NA	NA	-4804	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.005000	0.492537	
mm_72443.1	chr8	83165330	83165530	+	1	NA	NA	NA	78	NM_027758	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.060000	0.611940	
mm_24735.1	chr3	95283102	95283302	+	1	NA	NA	NA	267	NM_199475	75007	Mm.279287	NM_133858	ENSMUSG00000038712	Fam63a	1810005H09Rik|4930504E06Rik|AA562754|AA960384|AW561904|cI-40|mKIAA1390|ni	family with sequence similarity 63, member A	protein-coding	0.040000	0.557214	
mm_33909.1	chr4	136332356	136332556	+	1	NA	NA	NA	21514	NM_001277123	74326	Mm.31051	NM_028871	ENSMUSG00000066037	Hnrnpr	2610003J05Rik|2610528B01Rik|Hnrpr	heterogeneous nuclear ribonucleoprotein R	protein-coding	0.025000	0.457711	
mm_57090.1	chr6	122587171	122587371	-	1	NA	NA	NA	15173	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.005000	0.452736	
mm_9397.1	chr1	172219796	172219996	-	1	NA	NA	NA	-1	NM_009813	12372	Mm.12829	NM_009813	ENSMUSG00000007122	Casq1	CSQ|CSQ-1|CSQ1|sCSQ	calsequestrin 1	protein-coding	0.020000	0.606965	
mm_105390.1	chr11	103373957	103374157	-	1	NA	NA	NA	-10365	NM_001205236	544817	Mm.259113	NM_133715	ENSMUSG00000034255	Arhgap27	2310069I04Rik|5730442P18Rik|Gm21552|Sh3d20	Rho GTPase activating protein 27	protein-coding	0.025000	0.542289	
mm_71836.1	chr8	68902207	68902407	+	1	NA	NA	NA	21752	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.000000	0.472637	
mm_162331.1	chr1	42672702	42672902	+	1	NA	NA	NA	22023	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.000000	0.427861	
mm_3031.1	chr1	133880822	133881022	+	1	NA	NA	NA	26251	NM_054076	269120	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	0.020000	0.497512	
mm_5652.1	chr1	40580049	40580249	-	1	NA	NA	NA	-78	NM_177084	110895	Mm.108602	NM_177084	ENSMUSG00000026065	Slc9a4	AW990558|D730009J23Rik|NHE4	solute carrier family 9 (sodium/hydrogen exchanger), member 4	protein-coding	0.020000	0.497512	-33(TCCTTTATAAGG,-,0.00),-31(CTTTATAAGGAA,+,0.00)
mm_104268.1	chr11	89048301	89048501	-	1	NA	NA	NA	12347	NM_019505	56077	Mm.153695	NM_019505	ENSMUSG00000000276	Dgke	C87606|DAGK6|DGK	diacylglycerol kinase, epsilon	protein-coding	0.000000	0.358209	
mm_133538.1	chr16	91061777	91061977	+	1	NA	NA	NA	7268	NM_001163695	74387	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.030000	0.522388	
mm_146292.1	chr18	79258124	79258324	+	1	NA	NA	NA	-148833	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.015000	0.477612	-33(GGGTATTAAAGG,-,0.00)
mm_120717.1	chr14	72851753	72851953	+	1	NA	NA	NA	-141850	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.020000	0.482587	
mm_114657.1	chr13	78024820	78025020	+	1	NA	NA	NA	18	NM_029315	75507	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding	0.040000	0.621891	
mm_154959.1	chrX	36874231	36874431	+	1	NA	NA	NA	36	NM_019668	22209	Mm.395649	NM_019668	ENSMUSG00000016308	Ube2a	HHR6A|HR6A|Mhr6a	ubiquitin-conjugating enzyme E2A	protein-coding	0.130000	0.741294	
mm_14842.1	chr2	147435404	147435604	+	1	NA	NA	NA	70510	NM_008780	18503	Mm.315502	NM_008780	ENSMUSG00000037034	Pax1	Pax-1|hbs|hunchback|un|undulated|wt	paired box 1	protein-coding	0.015000	0.477612	
mm_90716.1	chr10	4409875	4410075	-	1	NA	NA	NA	19191	NR_002891	433224	Mm.153111	NR_002891		Gm5512	EG433224	required for meiotic nuclear division 1 pseudogene	pseudo	0.010000	0.427861	
mm_9539.1	chr1	173879860	173880060	-	1	NA	NA	NA	227	NM_001170853	100040462	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	0.005000	0.383085	48(CCTTTTATATAT,+,0.00)
mm_126096.1	chr15	78044015	78044215	+	1	NA	NA	NA	-73291	NM_018749	55944	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	0.025000	0.517413	
mm_123850.1	chr14	70766449	70766649	-	1	NA	NA	NA	79	NM_023045	65246	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|mKIAA0745	exportin 7	protein-coding	0.145000	0.771144	
mm_130383.1	chr15	97856720	97856920	-	1	NA	NA	NA	-12318	NM_001204278	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.005000	0.542289	
mm_97686.1	chr11	80136259	80136459	+	1	NA	NA	NA	5794	NM_183275	68550	Mm.18466	NM_183275	ENSMUSG00000046909	Tefm	1110002N22Rik	transcription elongation factor, mitochondrial	protein-coding	0.020000	0.462687	42(CTTTTTAAATGG,+,0.00)
mm_95491.1	chr11	51619611	51619811	+	1	NA	NA	NA	-62	NM_026631	52530	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0.060000	0.507463	
mm_157905.1	chrX	78021237	78021437	-	1	NA	NA	NA	70037	NM_008754	18249	Mm.430771	NM_008754	ENSMUSG00000067684	Obp1a	OBP-1a|OBP5	odorant binding protein IA	protein-coding	0.015000	0.462687	
mm_144501.1	chr18	24474820	24475020	+	1	NA	NA	NA	4049	NM_026529	68046	Mm.276574	NM_026529	ENSMUSG00000024273	2700062C07Rik	AI195775|C87515	RIKEN cDNA 2700062C07 gene	protein-coding	0.005000	0.343284	
mm_153173.1	chr19	34493601	34493801	-	1	NA	NA	NA	-18566	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.010000	0.447761	-50(CCTTTTAAGTGT,+,0.00)
mm_71357.1	chr8	45658720	45658920	+	1	NA	NA	NA	-3173	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.015000	0.467662	25(CCTTTTAAAAAG,+,0.00),25(CCTTTTAAAAAG,-,0.00)
mm_168982.1	chr12	92883006	92883206	-	1	NA	NA	NA	561717	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0.020000	0.398010	
mm_18378.1	chr2	60004637	60004837	-	1	NA	NA	NA	121003	NM_001001182	407823	Mm.228071	NM_001001182	ENSMUSG00000026987	Baz2b	5830435C13Rik|BC053917|D2Ertd794e	bromodomain adjacent to zinc finger domain, 2B	protein-coding	0.010000	0.318408	
mm_115248.1	chr13	110396678	110396878	+	1	NA	NA	NA	1734	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.015000	0.552239	
mm_130126.1	chr15	89841808	89842008	-	1	NA	NA	NA	-48	NM_018803	54526	Mm.261601	NM_018803	ENSMUSG00000063260	Syt10	-	synaptotagmin X	protein-coding	0.150000	0.761194	
mm_137233.1	chr17	24414849	24415049	+	1	NA	NA	NA	274	NM_001080128	19826	Mm.1951	NM_009070	ENSMUSG00000034681	Rnps1	-	ribonucleic acid binding protein S1	protein-coding	0.100000	0.661692	
mm_7566.1	chr1	124764291	124764491	-	1	NA	NA	NA	671336	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.005000	0.388060	-45(CCTTTTATATCT,+,0.00)
mm_47196.1	chr5	120774036	120774236	-	1	NA	NA	NA	3523	NM_145226	246727	Mm.204887	NM_145226	ENSMUSG00000032661	Oas3	Oasl10	2'-5' oligoadenylate synthetase 3	protein-coding	0.030000	0.582090	
mm_173142.1	chrX	21762409	21762609	-	1	NA	NA	NA	47609	NM_020049	56774	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	0.030000	0.447761	
mm_64821.1	chr7	7299378	7299578	-	1	NA	NA	NA	79	NR_126156	12727	Mm.297883	NM_011334	ENSMUSG00000000605	Clcn4	Clc4-2|Clcn4-2	chloride channel, voltage-sensitive 4	protein-coding	0.050000	0.542289	37(TTGTTTAAATGG,-,0.00)
mm_65313.1	chr7	24806110	24806310	-	1	NA	NA	NA	-12585	NR_045096	545936	Mm.376228	NR_045096	ENSMUSG00000011350	Gm5893	EG545936|Gm477	predicted gene 5893	pseudo	0.010000	0.412935	
mm_45244.1	chr5	57616853	57617053	-	1	NA	NA	NA	100966	NR_015588	319216	Mm.332387	NR_015588	ENSMUSG00000097216	4932441J04Rik	-	RIKEN cDNA 4932441J04 gene	ncRNA	0.005000	0.422886	
mm_51047.1	chr6	65626910	65627110	+	1	NA	NA	NA	36612	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.000000	0.373134	
mm_39331.1	chr5	8660514	8660714	+	1	NA	NA	NA	522	NM_011076	18671	Mm.207354	NM_011076	ENSMUSG00000040584	Abcb1a	Abcb4|Evi32|Mdr1a|Mdr3|P-gp|Pgp|Pgy-3|Pgy3|mdr-3	ATP-binding cassette, sub-family B (MDR/TAP), member 1A	protein-coding	0.035000	0.582090	
mm_79980.1	chr9	66918774	66918974	+	1	NA	NA	NA	831	NM_173413	235442	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.025000	0.522388	
mm_14705.1	chr2	142699517	142699717	+	1	NA	NA	NA	201847	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.000000	0.487562	-38(GTGTTTAAAAGG,-,0.00)
mm_64792.1	chr7	6331163	6331363	-	1	NA	NA	NA	-829	NM_001033249	213011	Mm.333558	NM_001033249	ENSMUSG00000030443	Zfp583	BC056221|Znf583	zinc finger protein 583	protein-coding	0.120000	0.686567	-86(CGCCCTAAAAGG,-,0.00),-84(CCCTAAAAGGCG,+,0.00)
mm_8440.1	chr1	152808212	152808412	-	1	NA	NA	NA	8159	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.010000	0.537313	-36(AGCTTTTAAAAC,-,0.00),-35(GCTTTTAAAACT,+,0.00),-34(CTTTTAAAACTG,+,0.00)
mm_21361.1	chr2	157129952	157130152	-	1	NA	NA	NA	5170	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.005000	0.363184	-38(CCATTAATACCA,+,0.00)
mm_46276.1	chr5	100038811	100039011	-	1	NA	NA	NA	311	NM_016690	50926	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	0.150000	0.746269	-33(GGCTATAAAGGG,-,0.00)
mm_66480.1	chr7	45016007	45016207	-	1	NA	NA	NA	142	NM_001008422	233208	Mm.28298	NM_001008422	ENSMUSG00000038406	Scaf1	AI480556|SR-A1	SR-related CTD-associated factor 1	protein-coding	0.150000	0.751244	
mm_151759.1	chr19	5118173	5118373	-	1	NA	NA	NA	135	NR_045528	16594	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	0.125000	0.716418	-40(CCTTTAAGGCGG,+,0.00)
mm_100335.1	chr11	118333593	118333793	+	1	NA	NA	NA	8841	NM_021440	58251	Mm.439815	NM_021440	ENSMUSG00000076433	BC100451	Cep295nl|Ddc8|FS39|Kiaa1731nl	cDNA sequence BC100451	protein-coding	0.050000	0.592040	
mm_161498.1	chr15	89259043	89259243	+	1	NA	NA	NA	46589	NR_105924	102465981		NR_105924	ENSMUSG00000098442	Mir6959	Gm27807|mmu-mir-6959	microRNA 6959	ncRNA	0.015000	0.547264	
mm_170669.1	chr2	118558029	118558229	+	1	NA	NA	NA	-8443	NM_138313	171543	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.085000	0.616915	-37(CTCCTTAAAGGG,-,0.00),-35(CCTTAAAGGGGA,+,0.00)
mm_81484.1	chr9	109968918	109969118	+	1	NA	NA	NA	37244	NM_008633	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.005000	0.417910	
mm_120944.1	chr14	76687194	76687394	+	1	NA	NA	NA	9726	NR_015485	73272	Mm.116804	NR_015485	ENSMUSG00000101009	1700108F19Rik	1700020I02Rik|BB065030	RIKEN cDNA 1700108F19 gene	ncRNA	0.005000	0.497512	
mm_57567.1	chr6	127128727	127128927	-	1	NA	NA	NA	-19275	NM_177003	319801	Mm.101836	NM_177003	ENSMUSG00000038028	Tigar	9630033F20Rik|AA793651|AI595337|C79710|C85509	Trp53 induced glycolysis repulatory phosphatase	protein-coding	0.000000	0.343284	
mm_77170.1	chr8	111689487	111689687	-	1	NA	NA	NA	87	NR_106044	102466993		NR_106044	ENSMUSG00000099129	Mir7076	Gm27318|mmu-mir-7076	microRNA 7076	ncRNA	0.030000	0.631841	
mm_163951.1	chr14	54253569	54253769	+	1	NA	NA	NA	260	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.050000	0.542289	69(CAGTATATAAAG,-,0.00)
mm_18644.1	chr2	69533500	69533700	-	1	NA	NA	NA	52467	NM_001081088	14725	Mm.23847	NM_001081088	ENSMUSG00000027070	Lrp2	AI315343|AW536255|D230004K18Rik|Gp330|Megalin|b2b1625.2Clo	low density lipoprotein receptor-related protein 2	protein-coding	0.010000	0.398010	
mm_1605.1	chr1	74381647	74381847	+	1	NA	NA	NA	6544	NM_013612	18173	Mm.2913	NM_013612	ENSMUSG00000026177	Slc11a1	Bcg|Ity|Ity1|Lsh|Nramp|Nramp1|ity	solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1	protein-coding	0.030000	0.507463	
mm_140336.1	chr17	86778643	86778843	+	1	NA	NA	NA	24879	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.025000	0.522388	
mm_103123.1	chr11	70218954	70219154	-	1	NA	NA	NA	1940	NM_172371	69309	Mm.93266	NM_172371	ENSMUSG00000044367	Slc16a13	1700007D07Rik	solute carrier family 16 (monocarboxylic acid transporters), member 13	protein-coding	0.025000	0.606965	
mm_22002.1	chr2	167753221	167753421	-	1	NA	NA	NA	62144	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.025000	0.537313	
mm_135482.1	chr16	46010118	46010318	-	1	NA	NA	NA	195	NM_001134480	433022	Mm.380993	NM_001134480	ENSMUSG00000087141	Plcxd2	AW494639|EG433022	phosphatidylinositol-specific phospholipase C, X domain containing 2	protein-coding	0.055000	0.616915	
mm_31952.1	chr4	86748540	86748740	+	1	NA	NA	NA	85	NM_184088	329877	Mm.273718	NM_184088	ENSMUSG00000038024	Dennd4c	1700065A05Rik|AA420392	DENN/MADD domain containing 4C	protein-coding	0.090000	0.631841	
mm_32453.1	chr4	107367921	107368121	+	1	NA	NA	NA	237	NM_028355	72787	Mm.28478	NM_028355	ENSMUSG00000028614	Ndc1	2810475A17Rik|AI450313|Tmem48|sks	NDC1 transmembrane nucleoporin	protein-coding	0.085000	0.711443	
mm_118045.1	chr13	101701766	101701966	-	1	NA	NA	NA	-9236	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.005000	0.422886	
mm_83221.1	chr9	42258521	42258721	-	1	NA	NA	NA	5679	NM_172769	235293	Mm.32700	NM_172769	ENSMUSG00000032018	Sc5d	A830037K02|A830073K23Rik|Sc5dl	sterol-C5-desaturase	protein-coding	0.035000	0.502488	
mm_12476.1	chr2	71528563	71528763	+	1	NA	NA	NA	-782	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.035000	0.577114	
mm_133795.1	chr16	95278435	95278635	+	1	NA	NA	NA	20977	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.010000	0.507463	
mm_87359.1	chr10	43746448	43746648	+	1	NA	NA	NA	390	NR_040581	69443	Mm.484042	NR_040581	ENSMUSG00000111422	1700027J07Rik	-	RIKEN cDNA 1700027J07 gene	ncRNA	0.020000	0.492537	
mm_72539.1	chr8	83997159	83997359	+	1	NA	NA	NA	-413	NM_001081415	666704	Mm.298091	NM_001081415	ENSMUSG00000079003	Samd1	AA589507	sterile alpha motif domain containing 1	protein-coding	0.155000	0.830846	-80(CACCTTAAAAGC,-,0.00),-78(CCTTAAAAGCGG,+,0.00)
mm_109024.1	chr12	103763673	103763873	+	1	NA	NA	NA	9860	NM_009246	20703	Mm.439695	NM_009246	ENSMUSG00000071177	Serpina1d	AI118301|Dom4|PI4|Spi1-4	serine (or cysteine) peptidase inhibitor, clade A, member 1D	protein-coding	0.025000	0.477612	
mm_157520.1	chrX	50635160	50635360	-	1	NA	NA	NA	61	NR_015505	103012	Mm.482523	NR_015505	ENSMUSG00000085396	Firre	5830467J12Rik|6720401G13Rik|AW048145	functional intergenic repeating RNA element	ncRNA	0.055000	0.651741	73(CCTTTTATGTAG,+,0.00)
mm_167673.1	chr9	75217345	75217545	+	1	NA	NA	NA	-14569	NM_001081322	208943	Mm.41339	NM_001081322	ENSMUSG00000033590	Myo5c	9130003O20Rik|BB085560|C330029I24	myosin VC	protein-coding	0.010000	0.507463	
mm_7963.1	chr1	133930019	133930219	-	1	NA	NA	NA	-8718	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.015000	0.487562	
mm_82511.1	chr9	20498254	20498454	-	1	NA	NA	NA	-5608	NM_001110309	235028	Mm.297660	NM_146221	ENSMUSG00000059475	Zfp426	2900057C04Rik|KRAB1|Zfo61|Zfp68-rs1|Znf426|mKIAA4237	zinc finger protein 426	protein-coding	0.005000	0.432836	
mm_72036.1	chr8	70777248	70777448	+	1	NA	NA	NA	486	NR_029440	72093	Mm.271208	NR_029440		2010320M18Rik	-	RIKEN cDNA 2010320M18 gene	ncRNA	0.095000	0.542289	
mm_78257.1	chr9	21835411	21835611	+	1	NA	NA	NA	1	NM_001080940	624219	Mm.440264	NM_001080940	ENSMUSG00000047822	Angptl8	EG624219|Gm6484|Rifl	angiopoietin-like 8	protein-coding	0.035000	0.601990	
mm_89996.1	chr10	112269683	112269883	+	1	NA	NA	NA	-1340	NM_001025581	268345	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0.005000	0.412935	
mm_86574.1	chr10	12868317	12868517	+	1	NA	NA	NA	-6682	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.070000	0.641791	
mm_139732.1	chr17	57478805	57479005	+	1	NA	NA	NA	66409	NM_001104591	224916	Mm.469889	NM_001104591	ENSMUSG00000090655	Vmn2r120	EG224916	vomeronasal 2, receptor 120	protein-coding	0.005000	0.497512	
mm_37751.1	chr4	129623798	129623998	-	1	NA	NA	NA	10	NM_025455	66264	Mm.383215	NM_025455	ENSMUSG00000028795	Ccdc28b	1110002E08Rik|1810010N17Rik	coiled coil domain containing 28B	protein-coding	0.015000	0.527363	-45(CTCTTTAAATGC,-,0.00)
mm_148631.1	chr19	5455501	5455701	+	1	NA	NA	NA	1962	NM_198616	240514	Mm.329657	NM_198616	ENSMUSG00000095098	Ccdc85b	AI842788|BB115872	coiled-coil domain containing 85B	protein-coding	0.010000	0.497512	
mm_33527.1	chr4	130932153	130932353	+	1	NA	NA	NA	-12132	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.000000	0.437811	
mm_92594.1	chr10	80080428	80080628	-	1	NA	NA	NA	22174	NM_183426	216161	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch homolog 2 (Drosophila)	protein-coding	0.035000	0.502488	
mm_177.1	chr1	13668706	13668906	+	1	NA	NA	NA	35	NM_001011873	381246	Mm.311142	NM_001011873	ENSMUSG00000067813	Xkr9	Gm1620|XRG9	X-linked Kx blood group related 9	protein-coding	0.010000	0.348259	
mm_23316.1	chr3	53260424	53260624	+	1	NA	NA	NA	202734	NM_172501	212114	Mm.85744	NM_172501	ENSMUSG00000042997	Nhlrc3	4833441N19|8030451K01Rik|mKIAA4083	NHL repeat containing 3	protein-coding	0.020000	0.557214	
mm_138757.1	chr17	37050510	37050710	+	1	NA	NA	NA	4644	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.080000	0.671642	
mm_45437.1	chr5	67260991	67261191	-	1	NA	NA	NA	526	NM_030108	67878	Mm.23217	NM_028975	ENSMUSG00000037720	Tmem33	1110006G02Rik|1600019D15Rik|2410089A21Rik|2700052H22Rik|5430406L04Rik|AA388285|AI314185|AI426615|db83	transmembrane protein 33	protein-coding	0.075000	0.651741	
mm_101441.1	chr11	30159555	30159755	-	1	NA	NA	NA	38602	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.010000	0.507463	
mm_141138.1	chr17	26244116	26244316	-	1	NA	NA	NA	26	NM_207217	106581	Mm.28844	NM_207217	ENSMUSG00000024187	Fam234a	Itfg3	family with sequence similarity 234, member A	protein-coding	0.090000	0.746269	
mm_119556.1	chr14	48670024	48670224	+	1	NA	NA	NA	836	NR_029384	606497	Mm.165199	NR_029384	ENSMUSG00000098682	Otx2os1	-	orthodenticle homeobox 2 opposite strand 1	ncRNA	0.010000	0.412935	-97(CCCTTTAAGAGG,-,0.00),-96(CCTTTAAGAGGC,+,0.00),-33(GTTTTAAAACCC,+,0.00)
mm_170188.1	chr17	6422947	6423147	-	1	NA	NA	NA	-7065	NM_009342	21648	Mm.1948	NM_009342	ENSMUSG00000096255	Dynlt1b	AGS2|Dynlt1|Tctex-1|Tctex1	dynein light chain Tctex-type 1B	protein-coding	0.005000	0.611940	
mm_87624.1	chr10	57805511	57805711	+	1	NA	NA	NA	11067	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.000000	0.398010	
mm_168465.1	chr11	4815049	4815249	-	1	NA	NA	NA	17986	NM_001252253	18016	Mm.297109	NM_010898	ENSMUSG00000009073	Nf2	merlin	neurofibromin 2	protein-coding	0.000000	0.457711	
mm_123041.1	chr14	55588223	55588423	-	1	NA	NA	NA	2698	NM_011190	19188	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	0.010000	0.517413	
mm_164866.1	chr18	56505575	56505775	-	1	NA	NA	NA	-32464	NR_106160	102465790		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	0.025000	0.497512	
mm_94981.1	chr11	31796413	31796613	+	1	NA	NA	NA	28034	NR_102310	414116	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.015000	0.572139	
mm_137130.1	chr17	23599204	23599404	+	1	NA	NA	NA	183	NM_011747	22654	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	4933429B21|AI835008|Krox-8|Rhit|Zfp-13	zinc finger protein 13	protein-coding	0.030000	0.542289	
mm_128192.1	chr15	34995191	34995391	-	1	NA	NA	NA	157242	NM_001271704	16539	Mm.71045	NM_181317	ENSMUSG00000050963	Kcns2	E130006J24Rik|Kv9.2	K+ voltage-gated channel, subfamily S, 2	protein-coding	0.015000	0.467662	
mm_20349.1	chr2	127755618	127755818	-	1	NA	NA	NA	-25821	NM_145532	228576	Mm.133036	NM_145532	ENSMUSG00000027377	Mall	BC012256|BENE	mal, T cell differentiation protein-like	protein-coding	0.005000	0.442786	-77(ACCCCTAAATGG,-,0.00)
mm_75471.1	chr8	48008993	48009193	-	1	NA	NA	NA	-18542	NM_133791	52357	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.035000	0.502488	
mm_17335.1	chr2	26592580	26592780	-	1	NA	NA	NA	-1260	NR_106155	102465787		NR_106155	ENSMUSG00000105799	Mir126b	mmu-mir-126b	microRNA 126b	ncRNA	0.015000	0.532338	
mm_158191.1	chrX	104670867	104671067	-	1	NA	NA	NA	97	NM_175358	108672	Mm.30574	NM_175358	ENSMUSG00000033906	Zdhhc15	6030457O13Rik	zinc finger, DHHC domain containing 15	protein-coding	0.075000	0.696517	
mm_135202.1	chr16	36561448	36561648	-	1	NA	NA	NA	586	NM_013803	12374	Mm.103619	NM_013803	ENSMUSG00000051980	Casr	CaR|Gprc2a	calcium-sensing receptor	protein-coding	0.030000	0.582090	
mm_140502.1	chr17	4908455	4908655	-	1	NA	NA	NA	-86519	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.065000	0.592040	
mm_63125.1	chr7	122999674	122999874	+	1	NA	NA	NA	29210	NM_175023	19647	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6	protein-coding	0.015000	0.472637	-43(CCCTAGAAAAGC,-,0.00)
mm_44406.1	chr5	17847765	17847965	-	1	NA	NA	NA	1927	NM_001159557	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.005000	0.422886	
mm_56828.1	chr6	117174184	117174384	-	1	NA	NA	NA	5749	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.020000	0.547264	
mm_116713.1	chr13	51568217	51568417	-	1	NA	NA	NA	-1233	NM_009167	20418	Mm.131870	NM_009167	ENSMUSG00000021448	Shc3	N-Shc|Rai|ShcC	src homology 2 domain-containing transforming protein C3	protein-coding	0.010000	0.398010	
mm_1864.1	chr1	85105991	85106191	+	1	NA	NA	NA	3762	NM_213615	381287	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.020000	0.477612	
mm_41432.1	chr5	90903772	90903972	+	1	NA	NA	NA	-27	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.035000	0.621891	-34(GTGCATAAAAGG,-,0.00)
mm_132617.1	chr16	38742167	38742367	+	1	NA	NA	NA	8	NM_001285793	56375	Mm.182377	NM_019804	ENSMUSG00000022793	B4galt4	9130402O08Rik|B4galt-IV|b4Gal-T4|beta4Gal-T4|beta4GalT-IV	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 4	protein-coding	0.125000	0.771144	
mm_25463.1	chr3	108591268	108591468	+	1	NA	NA	NA	90	NM_181400	99512	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	0.120000	0.711443	
mm_97908.1	chr11	83440299	83440499	+	1	NA	NA	NA	2705	NM_025492	66330	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	0.105000	0.646766	
mm_73576.1	chr8	109778566	109778766	+	1	NA	NA	NA	83	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0.125000	0.701493	
mm_14951.1	chr2	151978292	151978492	+	1	NA	NA	NA	1827	NM_146127	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.005000	0.467662	
mm_123035.1	chr14	55559872	55560072	-	1	NA	NA	NA	-57	NR_037572	28199	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.080000	0.626866	
mm_57774.1	chr6	129237877	129238077	-	1	NA	NA	NA	68	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.015000	0.522388	
mm_150604.1	chr19	40828992	40829192	+	1	NA	NA	NA	-2187	NM_172839	240665	Mm.309	NM_172839	ENSMUSG00000025010	Ccnj	D430039C20Rik	cyclin J	protein-coding	0.000000	0.253731	
mm_107199.1	chr12	25320707	25320907	+	1	NA	NA	NA	191633	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.000000	0.467662	
mm_86742.1	chr10	19187225	19187425	+	1	NA	NA	NA	20087	NR_038022	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.010000	0.497512	
mm_30327.1	chr3	151731940	151732140	-	1	NA	NA	NA	17919	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.000000	0.303483	-81(TCTTTTAAACTG,+,0.00)
mm_96571.1	chr11	69045719	69045919	+	1	NA	NA	NA	182	NM_011496	20877	Mm.3488	NM_011496	ENSMUSG00000020897	Aurkb	AIM-1|AIRK2|AL022959|Aik2|Aim1|Ark2|AurB|IPL1|STK-1|Stk12|Stk5	aurora kinase B	protein-coding	0.075000	0.656716	
mm_173247.1	chrX	89488577	89488777	+	1	NA	NA	NA	-78988	NM_008821	18630	Mm.3086	NM_008821	ENSMUSG00000035395	Pet2	PC231|PC326|Pex3	plasmacytoma expressed transcript 2	protein-coding	0.055000	0.641791	
mm_52204.1	chr6	100833535	100833735	+	1	NA	NA	NA	-3	NM_182939	232314	Mm.27223	NM_182939	ENSMUSG00000052144	Ppp4r2	BE691708|C230060M08Rik	protein phosphatase 4, regulatory subunit 2	protein-coding	0.155000	0.756219	
mm_19486.1	chr2	93203203	93203403	-	1	NA	NA	NA	15719	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.005000	0.462687	
mm_63221.1	chr7	126293896	126294096	+	1	NA	NA	NA	21377	NM_145587	104175	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.010000	0.616915	
mm_170214.1	chr17	72635553	72635753	-	1	NA	NA	NA	-31346	NM_007439	11682	Mm.311854	NM_007439	ENSMUSG00000055471	Alk	CD246|Tcrz	anaplastic lymphoma kinase	protein-coding	0.035000	0.532338	
mm_68392.1	chr7	109524091	109524291	-	1	NA	NA	NA	4059	NR_028079	100302499	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	0.005000	0.407960	
mm_63411.1	chr7	127334631	127334831	+	1	NA	NA	NA	10583	NM_146202	233890	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0.030000	0.542289	
mm_93651.1	chr10	117376867	117377067	-	1	NA	NA	NA	6	NM_001013391	432508	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.130000	0.746269	
mm_131803.1	chr16	22899241	22899441	+	1	NA	NA	NA	-4955	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.010000	0.452736	
mm_28882.1	chr3	97824428	97824628	-	1	NA	NA	NA	-56514	NM_178080	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.050000	0.592040	
mm_15009.1	chr2	152562885	152563085	+	1	NA	NA	NA	-9759	NM_207276	403172	Mm.84518	NM_207276	ENSMUSG00000056544	Defb21	4930525K10Rik|Gm121	defensin beta 21	protein-coding	0.010000	0.427861	
mm_81478.1	chr9	109937130	109937330	+	1	NA	NA	NA	5456	NM_008633	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.005000	0.437811	
mm_593.1	chr1	39551704	39551904	+	1	NA	NA	NA	-2964	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.010000	0.363184	
mm_2578.1	chr1	118481952	118482152	+	1	NA	NA	NA	-22787	NR_027901	68204	Mm.443536	NR_027901	ENSMUSG00000107722	2900060B14Rik	-	RIKEN cDNA 2900060B14 gene	ncRNA	0.010000	0.467662	
mm_144450.1	chr18	23309993	23310193	+	1	NA	NA	NA	73	NM_001285813	13527	Mm.94371	NM_010087	ENSMUSG00000024302	Dtna	2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn	dystrobrevin alpha	protein-coding	0.055000	0.606965	
mm_39968.1	chr5	32152881	32153081	+	1	NA	NA	NA	16509	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.040000	0.611940	
mm_59218.1	chr7	24608224	24608424	+	1	NA	NA	NA	-3004	NM_001102613	232970	Mm.333663	NM_001102613	ENSMUSG00000074277	Phldb3	EG232970|ENSMUSG00000061511|Gm10102	pleckstrin homology like domain, family B, member 3	protein-coding	0.015000	0.542289	
mm_26830.1	chr3	10439915	10440115	-	1	NA	NA	NA	115	NM_029068	74718	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0.120000	0.741294	
mm_60002.1	chr7	30698841	30699041	+	1	NA	NA	NA	15	NM_026961	69147	Mm.307035	NM_026961	ENSMUSG00000013083	2200002J24Rik	-	RIKEN cDNA 2200002J24 gene	protein-coding	0.015000	0.512438	
mm_93256.1	chr10	95548431	95548631	-	1	NA	NA	NA	10790	NR_037212	100526463		NR_037212	ENSMUSG00000092867	Mir3058	mir-3058|mmu-mir-3058	microRNA 3058	ncRNA	0.015000	0.417910	
mm_138277.1	chr17	34605773	34605973	+	1	NA	NA	NA	12	NM_001163379	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.065000	0.701493	
mm_25314.1	chr3	106147456	106147656	+	1	NA	NA	NA	20008	NM_009892	12655	Mm.387173	NM_009892	ENSMUSG00000040809	Chil3	AI505981|Chi3l3|ECF-L|Ym1	chitinase-like 3	protein-coding	0.005000	0.388060	
mm_47278.1	chr5	122050046	122050246	-	1	NA	NA	NA	-295	NM_001312908	13048	Mm.156172	NM_007804	ENSMUSG00000042589	Cux2	1700051K22Rik|Cutl2|Cux-2|ENSMUSG00000072641	cut-like homeobox 2	protein-coding	0.145000	0.791045	
mm_131276.1	chr16	11022227	11022427	+	1	NA	NA	NA	13429	NR_040518	100043147	Mm.489001	NR_040518	ENSMUSG00000097056	Gm4262	-	predicted gene 4262	ncRNA	0.010000	0.497512	-97(TCCCATTAAAGC,-,0.00)
mm_11095.1	chr2	27951272	27951472	+	1	NA	NA	NA	64947	NM_015734	12831	Mm.7281	NM_015734	ENSMUSG00000026837	Col5a1	AI413331	collagen, type V, alpha 1	protein-coding	0.025000	0.587065	
mm_54230.1	chr6	28213729	28213929	-	1	NA	NA	NA	47772	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.005000	0.368159	
mm_34868.1	chr4	155558013	155558213	+	1	NA	NA	NA	-4279	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.020000	0.388060	
mm_8048.1	chr1	135373105	135373305	-	1	NA	NA	NA	1858	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.030000	0.517413	
mm_166433.1	chr5	137187720	137187920	-	1	NA	NA	NA	-71613	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.015000	0.407960	
mm_147125.1	chr18	35889697	35889897	-	1	NA	NA	NA	59979	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.130000	0.706468	
mm_40659.1	chr5	65154999	65155199	+	1	NA	NA	NA	23868	NM_175174	71778	Mm.10281	NM_175174	ENSMUSG00000054920	Klhl5	1300013C10Rik	kelch-like 5	protein-coding	0.005000	0.402985	
mm_19828.1	chr2	111229437	111229637	-	1	NA	NA	NA	63	NM_026248	67575	Mm.84331	NM_026248	ENSMUSG00000027157	4930430A15Rik	-	RIKEN cDNA 4930430A15 gene	protein-coding	0.015000	0.437811	
mm_145051.1	chr18	40256889	40257089	+	1	NA	NA	NA	27	NR_045177	73001	Mm.428647	NR_045177	ENSMUSG00000071860	2900055J20Rik	-	RIKEN cDNA 2900055J20 gene	ncRNA	0.055000	0.587065	
mm_25718.1	chr3	122729073	122729273	+	1	NA	NA	NA	15	NM_153422	242202	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	0.090000	0.661692	
mm_159502.1	chr4	43821156	43821356	-	1	NA	NA	NA	177	NM_019474	29846	Mm.377121	NM_019474	ENSMUSG00000110970	Olfr156	MOR262-6|OR37B|Olfr37b|mOR37b	olfactory receptor 156	protein-coding	0.030000	0.547264	
mm_75698.1	chr8	68212098	68212298	-	1	NA	NA	NA	-64330	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.005000	0.422886	31(TGCTTTTTAAAG,-,0.00),33(CTTTTTAAAGAA,+,0.00)
mm_57884.1	chr6	131348286	131348486	-	1	NA	NA	NA	-34559	NM_172891	243659	Mm.20114	NM_172891	ENSMUSG00000032899	Styk1	9130025L13|AI326477|Nok	serine/threonine/tyrosine kinase 1	protein-coding	0.000000	0.462687	
mm_102837.1	chr11	69323700	69323900	-	1	NA	NA	NA	73	NM_172560	216846	Mm.28774	NM_172560	ENSMUSG00000032782	Cntrob	9830165K03Rik|Lip8|Nip2	centrobin, centrosomal BRCA2 interacting protein	protein-coding	0.070000	0.621891	
mm_20262.1	chr2	126670578	126670778	-	1	NA	NA	NA	4914	NM_001271469	14391	Mm.293266	NM_010249	ENSMUSG00000027361	Gabpb1	BABPB2|E4TF1|E4TF1-47|E4TF1-53|E4Tf1B|GABPB|GABPB-1|GABPB-2|GABPB1-1|GABPB1-2|NRF2B1|NRF2B2	GA repeat binding protein, beta 1	protein-coding	0.005000	0.378109	10(TGGCTTTAAAGG,-,0.00),11(GGCTTTAAAGGT,-,0.00),12(GCTTTAAAGGTG,+,0.00),73(GTCCTTAAAAAG,-,0.00),75(CCTTAAAAAGAG,+,0.00)
mm_69654.1	chr7	139957592	139957792	-	1	NA	NA	NA	68	NR_029589	387198		NR_029589	ENSMUSG00000065502	Mir202	Mirn202|mir-202|mmu-mir-202	microRNA 202	ncRNA	0.025000	0.507463	
mm_119212.1	chr14	32991342	32991542	+	1	NA	NA	NA	60	NM_026253	67580	Mm.46115	NM_026253	ENSMUSG00000041673	Lrrc18	4930442L21Rik|MTLR1	leucine rich repeat containing 18	protein-coding	0.015000	0.487562	
mm_171169.1	chr3	28557588	28557788	-	1	NA	NA	NA	137745	NR_130342	100628591		NR_130342	ENSMUSG00000092990	Mir466q	Mir446q|mmu-mir-466q|mu-mir-446q	microRNA 466q	ncRNA	0.025000	0.492537	
mm_90894.1	chr10	10344635	10344835	-	1	NA	NA	NA	127579	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.000000	0.398010	
mm_163185.1	chr11	94133348	94133548	+	1	NA	NA	NA	-78006	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.020000	0.572139	
mm_137386.1	chr17	25803299	25803499	+	1	NA	NA	NA	-5686	NM_001164225	214931	Mm.152289	NM_001164225	ENSMUSG00000025738	Fbxl16	BC042620|Scirr1	F-box and leucine-rich repeat protein 16	protein-coding	0.010000	0.597015	
mm_22475.1	chr3	5218557	5218757	+	1	NA	NA	NA	103	NM_030708	80892	Mm.41522	NM_030708	ENSMUSG00000025255	Zfhx4	A930021B15|C130041O22Rik|Zfh-4|Zfh4	zinc finger homeodomain 4	protein-coding	0.055000	0.467662	
mm_78494.1	chr9	32723289	32723489	+	1	NA	NA	NA	27347	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.010000	0.462687	-69(CACTTGAAAAGG,-,0.00)
mm_35379.1	chr4	33245876	33246076	-	1	NA	NA	NA	2811	NM_001033225	108767	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.025000	0.417910	
mm_44312.1	chr5	9161627	9161827	-	1	NA	NA	NA	49	NM_001110327	23857	Mm.22480	NM_011806	ENSMUSG00000042508	Dmtf1	Dimp|Dmp1	cyclin D binding myb-like transcription factor 1	protein-coding	0.095000	0.721393	
mm_73065.1	chr8	94388096	94388296	+	1	NA	NA	NA	1696	NM_022331	64209	Mm.29151	NM_022331	ENSMUSG00000031770	Herpud1	Herp|Mifl|SUP	homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1	protein-coding	0.000000	0.343284	
mm_156299.1	chrX	136837776	136837976	+	1	NA	NA	NA	15130	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.005000	0.333333	
mm_75894.1	chr8	70895786	70895986	-	1	NA	NA	NA	-30	NR_002901	104370		NR_002901		Snora68	MBI-30|Rnu68	small nucleolar RNA, H/ACA box 68	snoRNA	0.030000	0.582090	37(GTTTAAATAGTG,+,0.00)
mm_67476.1	chr7	80534995	80535195	-	1	NA	NA	NA	24	NM_001042527	12144	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ helicase-like	protein-coding	0.125000	0.651741	
mm_20836.1	chr2	147194145	147194345	-	1	NA	NA	NA	6821	NR_108091	78068	Mm.261511	NR_108091	ENSMUSG00000053545	6430503K07Rik	-	RIKEN cDNA 6430503K07 gene	ncRNA	0.115000	0.751244	
mm_22242.1	chr2	174472884	174473084	-	1	NA	NA	NA	-43	NM_025531	66390	Mm.182294	NM_025531	ENSMUSG00000016257	Slmo2	2310042G06Rik|AA407013|Prelid3b	slowmo homolog 2 (Drosophila)	protein-coding	0.120000	0.726368	
mm_75757.1	chr8	69909281	69909481	-	1	NA	NA	NA	-6823	NM_023312	67184	Mm.21162	NM_023312	ENSMUSG00000036199	Ndufa13	2700054G14Rik|AU022060|CDA016|CGI-39|GRIM-19|Grim19	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 13	protein-coding	0.000000	0.383085	
mm_130435.1	chr15	98170410	98170610	-	1	NA	NA	NA	2704	NM_177716	239650	Mm.54140	NM_177716	ENSMUSG00000029875	Ccdc184	5630400A08|AI836003	coiled-coil domain containing 184	protein-coding	0.005000	0.562189	
mm_134683.1	chr16	22412821	22413021	-	1	NA	NA	NA	26649	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.020000	0.522388	
mm_114819.1	chr13	91678524	91678724	+	1	NA	NA	NA	-62897	NM_028790	74156	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0.000000	0.368159	
mm_140797.1	chr17	21471508	21471708	-	1	NA	NA	NA	-17380	NM_013843	24132	Mm.42140	NM_013843	ENSMUSG00000057409	Zfp53	D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8	zinc finger protein 53	protein-coding	0.010000	0.427861	-32(AAGTATAAAAAG,-,0.00)
mm_140401.1	chr17	87639785	87639985	+	1	NA	NA	NA	3906	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.000000	0.343284	-86(CTTCTTAAAGGC,+,0.00)
mm_114415.1	chr13	64365188	64365388	+	1	NA	NA	NA	5232	NM_009984	13039	Mm.930	NM_009984	ENSMUSG00000021477	Ctsl	1190035F06Rik|CatL|Ctsl1|MEP|fs|nkt	cathepsin L	protein-coding	0.005000	0.427861	
mm_143396.1	chr17	70740018	70740218	-	1	NA	NA	NA	106659	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.005000	0.358209	
mm_61303.1	chr7	67951784	67951984	+	1	NA	NA	NA	-373	NM_010513	16001	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.150000	0.711443	
mm_57907.1	chr6	132439655	132439855	-	1	NA	NA	NA	-75620	NM_053251	114600	Mm.428480	NM_053251		Gm4736	EG114600|Mp4|Mp6	predicted gene 4736	protein-coding	0.005000	0.447761	
mm_152043.1	chr19	6140999	6141199	-	1	NA	NA	NA	38	NM_019722	56327	Mm.21071	NM_019722	ENSMUSG00000024944	Arl2	2610009M23Rik|AI115441|AW553335	ADP-ribosylation factor-like 2	protein-coding	0.090000	0.636816	
mm_169967.1	chr17	12769694	12769894	+	1	NA	NA	NA	-88	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.130000	0.711443	
mm_147506.1	chr18	50181153	50181353	-	1	NA	NA	NA	53052	NM_008292	15488	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.030000	0.467662	
mm_571.1	chr1	38902779	38902979	+	1	NA	NA	NA	-4719	NM_145142	98388	Mm.260054	NM_145142	ENSMUSG00000026080	Chst10	AI507003|AU041319|Hnk-1st|ST	carbohydrate sulfotransferase 10	protein-coding	0.010000	0.412935	
mm_105812.1	chr11	111065967	111066167	-	1	NA	NA	NA	-97	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.070000	0.661692	
mm_129168.1	chr15	76248059	76248259	-	1	NA	NA	NA	-32	NR_105918	102465575		NR_105918	ENSMUSG00000098625	Mir6953	Gm27738|mmu-mir-6953	microRNA 6953	ncRNA	0.005000	0.631841	
mm_61044.1	chr7	49778262	49778462	+	1	NA	NA	NA	4	NM_133740	71974	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	0.170000	0.736318	
mm_50464.1	chr6	48951772	48951972	+	1	NA	NA	NA	21976	NM_001081273	69761	Mm.333053	NM_001081273	ENSMUSG00000029813	1600015I10Rik	AI429442|Doxl1	RIKEN cDNA 1600015I10 gene	protein-coding	0.015000	0.487562	
mm_2689.1	chr1	127486637	127486837	+	1	NA	NA	NA	191284	NM_028135	72160	Mm.281287	NM_028135	ENSMUSG00000026347	Tmem163	2610024A01Rik|SV31	transmembrane protein 163	protein-coding	0.010000	0.422886	
mm_107061.1	chr12	16656207	16656407	+	1	NA	NA	NA	2837	NM_008747	18217	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT2R|NTRL	neurotensin receptor 2	protein-coding	0.005000	0.447761	
mm_6251.1	chr1	68910804	68911004	-	1	NA	NA	NA	197155	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	0.000000	0.358209	
mm_127082.1	chr15	97572179	97572379	+	1	NA	NA	NA	133543	NM_028003	71919	Mm.12255	NM_028003	ENSMUSG00000022466	Rpap3	2310042P20Rik|D15Ertd682e	RNA polymerase II associated protein 3	protein-coding	0.010000	0.427861	
mm_274.1	chr1	21240485	21240685	+	1	NA	NA	NA	0	NM_001288617	14859	Mm.394593	NM_010356	ENSMUSG00000025934	Gsta3	Gst2-3	glutathione S-transferase, alpha 3	protein-coding	0.005000	0.383085	46(CTTTTTAGAGGG,+,0.00)
mm_101131.1	chr11	12428880	12429080	-	1	NA	NA	NA	-16840	NM_001282994	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.010000	0.472637	-1(GTCTTTAAGTGG,-,0.00)
mm_17907.1	chr2	35315337	35315537	-	1	NA	NA	NA	21572	NM_013515	13830	Mm.295284	NM_013515	ENSMUSG00000026880	Stom	Epb7.2	stomatin	protein-coding	0.005000	0.472637	
mm_29774.1	chr3	127282276	127282476	-	1	NA	NA	NA	121071	NR_105029	100862268	Mm.444603	NR_105029	ENSMUSG00000097456	LOC100862268	-	uncharacterized LOC100862268	ncRNA	0.015000	0.477612	
mm_25919.1	chr3	131156353	131156553	+	1	NA	NA	NA	43662	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.010000	0.437811	-33(CAGTTTTAAAGA,-,0.00)
mm_163891.1	chr14	26970299	26970499	-	1	NA	NA	NA	152	NM_145221	72993	Mm.202322	NM_145221	ENSMUSG00000040760	Appl1	2900057D21Rik|7330406P05Rik|AI585782|AW209077|BB022931|C88264|DIP13	adaptor protein, phosphotyrosine interaction, PH domain and leucine zipper containing 1	protein-coding	0.120000	0.746269	
mm_8760.1	chr1	160577799	160577999	-	1	NA	NA	NA	-146	NM_001146330	620246	Mm.478780	NM_001146330		Gpr52	EG620246	G protein-coupled receptor 52	protein-coding	0.005000	0.507463	
mm_104470.1	chr11	95309597	95309797	-	1	NA	NA	NA	549	NM_001195004	217127	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	0.080000	0.611940	
mm_1044.1	chr1	58795577	58795777	+	1	NA	NA	NA	303	NM_009812	12370	Mm.336851	NM_009812	ENSMUSG00000026029	Casp8	CASP-8|FLICE|MACH|Mch5	caspase 8	protein-coding	0.080000	0.656716	
mm_53952.1	chr6	5298239	5298439	-	1	NA	NA	NA	34	NM_183308	330260	Mm.126984	NM_183308	ENSMUSG00000032667	Pon2	6330405I24Rik|AI481612	paraoxonase 2	protein-coding	0.135000	0.776119	
mm_2744.1	chr1	128591211	128591411	+	1	NA	NA	NA	988	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.060000	0.557214	
mm_97968.1	chr11	83850742	83850942	+	1	NA	NA	NA	-27	NM_001291268	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.020000	0.502488	-4(TCTTATATGGCC,+,0.00)
mm_62445.1	chr7	101383893	101384093	+	1	NA	NA	NA	-1533	NM_027180	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.015000	0.592040	
mm_110647.1	chr12	59011814	59012014	-	1	NA	NA	NA	103	NM_009147	20334	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	0.070000	0.671642	
mm_8025.1	chr1	135105257	135105457	-	1	NA	NA	NA	-81	NM_001033409	329252	Mm.279594	NM_001033409	ENSMUSG00000042793	Lgr6	A530037C04Rik|D830026M09	leucine-rich repeat-containing G protein-coupled receptor 6	protein-coding	0.080000	0.661692	
mm_159531.1	chr4	65124095	65124295	+	1	NA	NA	NA	21	NM_021362	18491	Mm.317854	NM_021362	ENSMUSG00000028370	Pappa	8430414N03Rik|IGFBP-4ase|PAG1|PAPP-A	pregnancy-associated plasma protein A	protein-coding	0.015000	0.447761	
mm_136539.1	chr16	97763646	97763846	-	1	NA	NA	NA	9	NM_023663	72388	Mm.35290	NM_023663	ENSMUSG00000005251	Ripk4	2310069J12Rik|AI552420|ANKK2|Ankrd3|DIk|PKK|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding	0.115000	0.731343	
mm_131227.1	chr16	10170146	10170346	+	1	NA	NA	NA	18	NM_026594	68172	Mm.23690	NM_026594	ENSMUSG00000039209	Rpl39l	4930517K11Rik	ribosomal protein L39-like	protein-coding	0.065000	0.606965	
mm_113491.1	chr13	37378712	37378912	+	1	NA	NA	NA	33467	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.000000	0.417910	
mm_7238.1	chr1	93478704	93478904	-	1	NA	NA	NA	113	NM_133808	110611	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0.070000	0.587065	-43(GGCCATATAGAG,-,0.00),-41(CCATATAGAGGC,+,0.00)
mm_9769.1	chr1	180996050	180996250	-	1	NA	NA	NA	21419	NM_010145	13849	Mm.9075	NM_010145	ENSMUSG00000038776	Ephx1	EH|Eph-1|Eph1|Epxh1|mEH	epoxide hydrolase 1, microsomal	protein-coding	0.020000	0.592040	
mm_136067.1	chr16	84735213	84735413	-	1	NA	NA	NA	-11	NM_017404	27393	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	0.125000	0.686567	
mm_90030.1	chr10	115430793	115430993	+	1	NA	NA	NA	45934	NM_001033261	216345	Mm.207621	NM_001033261	ENSMUSG00000034163	Zfc3h1	BC033596|Ccdc131|Psrc2	zinc finger, C3H1-type containing	protein-coding	0.000000	0.353234	
mm_136243.1	chr16	90934688	90934888	-	1	NA	NA	NA	61	NM_026502	68001	Mm.45374	NM_026502	ENSMUSG00000022972	1110004E09Rik	-	RIKEN cDNA 1110004E09 gene	protein-coding	0.115000	0.686567	
mm_68228.1	chr7	104441307	104441507	-	1	NA	NA	NA	23786	NM_009099	20128	Mm.295578	NM_009099	ENSMUSG00000030921	Trim30a	Rpt-1|Rpt1|Trim30	tripartite motif-containing 30A	protein-coding	0.000000	0.373134	
mm_129403.1	chr15	78285059	78285259	-	1	NA	NA	NA	-310	NR_106137	102465776		NR_106137	ENSMUSG00000098996	Mir7676-1	Gm27600|mmu-mir-7676-1	microRNA 7676-1	ncRNA	0.005000	0.582090	
mm_116795.1	chr13	53472736	53472936	-	1	NA	NA	NA	-56	NM_013601	17702	Mm.1763	NM_013601	ENSMUSG00000021469	Msx2	BB122635|Hox-8|Hox8|Hox8.1	msh homeobox 2	protein-coding	0.085000	0.696517	
mm_51309.1	chr6	72313693	72313893	+	1	NA	NA	NA	9183	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.010000	0.527363	
mm_155882.1	chrX	101522189	101522389	+	1	NA	NA	NA	-10446	NM_001290729	270627	Mm.261750	NM_001081008	ENSMUSG00000031314	Taf1	AU015687|B430306D02Rik|Ccg-1|Ccg1|KAT4|N-TAF1|TAFII250|Taf2a|p250	TATA-box binding protein associated factor 1	protein-coding	0.045000	0.587065	
mm_132932.1	chr16	49854995	49855195	+	1	NA	NA	NA	-559	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.015000	0.517413	
mm_150522.1	chr19	39036938	39037138	+	1	NA	NA	NA	-23968	NM_028191	72303	Mm.482578	NM_028191	ENSMUSG00000067231	Cyp2c65	2210009K14Rik	cytochrome P450, family 2, subfamily c, polypeptide 65	protein-coding	0.000000	0.363184	
mm_111316.1	chr12	85824767	85824967	-	1	NA	NA	NA	-83	NM_001347395	320244	Mm.132172	NM_177114	ENSMUSG00000012609	Ttll5	1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998	tubulin tyrosine ligase-like family, member 5	protein-coding	0.090000	0.616915	78(ACCCCTAAAAGA,-,0.00)
mm_7513.1	chr1	124025366	124025566	-	1	NA	NA	NA	20093	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.000000	0.378109	
mm_70171.1	chr7	143628252	143628452	-	1	NA	NA	NA	-507	NM_175649	244237	Mm.247498	NM_175649	ENSMUSG00000045362	Tnfrsf26	Tnfrh3|Tnfrsf24	tumor necrosis factor receptor superfamily, member 26	protein-coding	0.010000	0.472637	
mm_112377.1	chr12	119231896	119232096	-	1	NA	NA	NA	6280	NM_177290	320910	Mm.217000	NM_177290	ENSMUSG00000025321	Itgb8	4832412O06Rik	integrin beta 8	protein-coding	0.005000	0.358209	
mm_3042.1	chr1	134040250	134040450	+	1	NA	NA	NA	2835	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.015000	0.572139	
mm_4973.1	chr1	191317776	191317976	+	1	NA	NA	NA	242	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.130000	0.771144	
mm_60066.1	chr7	31263530	31263730	+	1	NA	NA	NA	-106	NM_001310660	100043827		NM_001310660		Scgb2b1	Abpbg1|Gm4677	secretoglobin, family 2B, member 1	protein-coding	0.005000	0.497512	74(TGGTTTATAAGG,-,0.00)
mm_42530.1	chr5	115631945	115632145	+	1	NA	NA	NA	58	NM_198163	77407	Mm.27553	NM_198163	ENSMUSG00000029518	Rab35	9530019H02Rik|AU040256|H-ray|RAB1C|RAY	RAB35, member RAS oncogene family	protein-coding	0.140000	0.771144	
mm_12116.1	chr2	61595396	61595596	+	1	NA	NA	NA	2399	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.010000	0.427861	-8(TGGTCTATAAGC,-,0.00),11(GTCTATATAAGC,-,0.00)
mm_101636.1	chr11	36432767	36432967	-	1	NA	NA	NA	-452778	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.025000	0.467662	
mm_29333.1	chr3	108134590	108134790	-	1	NA	NA	NA	11462	NM_010306	14679	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	0.015000	0.398010	
mm_132126.1	chr16	31754620	31754820	+	1	NA	NA	NA	370	NM_001252436	13383	Mm.382	NM_007862	ENSMUSG00000022770	Dlg1	B130052P05Rik|Dlgh1|E-dlg/SAP97|SAP-97|SAP97|mKIAA4187	discs, large homolog 1 (Drosophila)	protein-coding	0.010000	0.437811	
mm_114150.1	chr13	55369697	55369897	+	1	NA	NA	NA	65	NM_016758	51791	Mm.1426	NM_016758	ENSMUSG00000052087	Rgs14	RPIP1	regulator of G-protein signaling 14	protein-coding	0.030000	0.572139	
mm_63264.1	chr7	126759503	126759703	+	1	NA	NA	NA	-23	NM_011952	26417	Mm.8385	NM_011952	ENSMUSG00000063065	Mapk3	Erk-1|Erk1|Ert2|Esrk1|Mnk1|Mtap2k|Prkm3|p44|p44erk1|p44mapk	mitogen-activated protein kinase 3	protein-coding	0.160000	0.865672	
mm_108244.1	chr12	78226292	78226492	+	1	NA	NA	NA	-263	NM_172952	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.085000	0.681592	
mm_123497.1	chr14	66199820	66200020	-	1	NA	NA	NA	13632	NM_001162366	19229	Mm.21613	NM_172498	ENSMUSG00000059456	Ptk2b	CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk	PTK2 protein tyrosine kinase 2 beta	protein-coding	0.030000	0.482587	
mm_72149.1	chr8	72144513	72144713	+	1	NA	NA	NA	9321	NM_001001491	326618	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	0.015000	0.512438	
mm_94792.1	chr11	22860737	22860937	+	1	NA	NA	NA	-501	NM_001169114	53625	Mm.395495	NM_016888	ENSMUSG00000051650	B3gnt2	AA408337|AA409404|AW260308|B3Galt6|B3gnt1|BGnT-1|BGnT-2|BGnT1|BGnT2|Beta3gnt	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2	protein-coding	0.030000	0.412935	
mm_131934.1	chr16	23612864	23613064	+	1	NA	NA	NA	3045	NM_023386	67775	Mm.475107	NM_023386	ENSMUSG00000033355	Rtp4	5830458K16Rik|Ifrg28	receptor transporter protein 4	protein-coding	0.015000	0.477612	
mm_106774.1	chr12	4601877	4602077	+	1	NA	NA	NA	8969	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.005000	0.417910	66(GGCTATAAAGAC,-,0.00)
mm_23932.1	chr3	83844917	83845117	+	1	NA	NA	NA	-3409	NM_011905	24088	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.025000	0.547264	
mm_169243.1	chr13	74768010	74768210	-	1	NA	NA	NA	2626	NM_001301156	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.010000	0.477612	
mm_5148.1	chr1	9748314	9748514	-	1	NA	NA	NA	-32	NM_173443	70675	Mm.274493	NM_173443	ENSMUSG00000045210	Vcpip1	4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850	valosin containing protein (p97)/p47 complex interacting protein 1	protein-coding	0.060000	0.601990	
mm_63913.1	chr7	139224881	139225081	+	1	NA	NA	NA	-11674	NM_001162540	57740	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	0.015000	0.507463	
mm_61913.1	chr7	90146695	90146895	+	1	NA	NA	NA	16563	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.005000	0.283582	-14(GTTTTTTAAAGG,-,0.00),-13(TTTTTTAAAGGT,+,0.00)
mm_52718.1	chr6	119690096	119690296	+	1	NA	NA	NA	-145849	NM_009525	22419	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0.025000	0.447761	
mm_172208.1	chr6	58567719	58567919	-	1	NA	NA	NA	-28853	NM_011920	26357	Mm.333096	NM_011920	ENSMUSG00000029802	Abcg2	ABC15|ABCP|AI428558|BCRP|Bcrp1|MXR|MXR1	ATP-binding cassette, sub-family G (WHITE), member 2	protein-coding	0.040000	0.472637	
mm_154603.1	chrX	7638586	7638786	+	1	NA	NA	NA	106	NM_009305	20977	Mm.223674	NM_009305	ENSMUSG00000031144	Syp	A230093K24Rik|AI848995|Syn|p38	synaptophysin	protein-coding	0.105000	0.691542	
mm_45046.1	chr5	41707576	41707776	-	1	NA	NA	NA	15	NM_001310592	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.100000	0.711443	
mm_77462.1	chr8	122140473	122140673	-	1	NA	NA	NA	-141568	NM_009569	22761	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.015000	0.597015	
mm_75207.1	chr8	39605178	39605378	-	1	NA	NA	NA	37400	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.293532	
mm_3300.1	chr1	136696308	136696508	+	1	NA	NA	NA	197	NR_037986	100503474	Mm.428276	NR_037986		Platr22	Gm16880	pluripotency associated transcript 22	ncRNA	0.045000	0.497512	-86(GCCCCGAAAAGG,-,0.00)
mm_49497.1	chr6	29736037	29736237	+	1	NA	NA	NA	640	NM_176996	319757	Mm.29279	NM_176996	ENSMUSG00000001761	Smo	E130215L21Rik|Smoh|bnb|smoothened	smoothened, frizzled class receptor	protein-coding	0.105000	0.776119	
mm_163866.1	chr14	19418890	19419090	+	1	NA	NA	NA	183597	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.353234	
mm_50276.1	chr6	46040963	46041163	+	1	NA	NA	NA	981002	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.005000	0.273632	
mm_140869.1	chr17	23785965	23786165	-	1	NA	NA	NA	12	NM_029798	76917	Mm.269613	NM_029798	ENSMUSG00000023911	Flywch2	2810417J12Rik|3010014L17Rik|AW548203	FLYWCH family member 2	protein-coding	0.090000	0.701493	
mm_141429.1	chr17	29465388	29465588	-	1	NA	NA	NA	-25557	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.010000	0.472637	
mm_42814.1	chr5	121837189	121837389	+	1	NA	NA	NA	-430	NM_008507	16923	Mm.65493	NM_008507	ENSMUSG00000042594	Sh2b3	AI429800|Lnk	SH2B adaptor protein 3	protein-coding	0.085000	0.696517	
mm_142963.1	chr17	56120919	56121119	-	1	NA	NA	NA	927	NM_029796	76905	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0.015000	0.532338	
mm_164332.1	chr16	10284246	10284446	-	1	NA	NA	NA	29622	NM_007929	13731	Mm.246009	NM_007929	ENSMUSG00000022505	Emp2	XMP	epithelial membrane protein 2	protein-coding	0.005000	0.402985	20(TCCTTTAAAAGC,-,0.00),21(CCTTTAAAAGCT,+,0.00),30(GCTTTTATGAAG,+,0.00)
mm_128948.1	chr15	74751931	74752131	-	1	NA	NA	NA	948	NM_011838	23936	Mm.257067	NM_011838	ENSMUSG00000022594	Lynx1	AI838844|SLURP-2	Ly6/neurotoxin 1	protein-coding	0.010000	0.552239	
mm_139756.1	chr17	64269764	64269964	+	1	NA	NA	NA	62019	NM_144859	224938	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja 2, RING-H2 motif containing	protein-coding	0.015000	0.522388	
mm_66458.1	chr7	44885760	44885960	-	1	NA	NA	NA	6564	NM_001331208	75613	Mm.157778	NM_029365	ENSMUSG00000002968	Med25	2610034E13Rik|2610529E18Rik|ESTM2	mediator complex subunit 25	protein-coding	0.030000	0.601990	
mm_6465.1	chr1	74030802	74031002	-	1	NA	NA	NA	93545	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.005000	0.542289	-66(CCTTTTAGGGCA,+,0.00)
mm_59269.1	chr7	24899093	24899293	+	1	NA	NA	NA	1682	NM_007655	12518	Mm.1355	NM_007655	ENSMUSG00000003379	Cd79a	Ig-alpha|Iga|Igalpha|Ly-54|Ly54|mb-1	CD79A antigen (immunoglobulin-associated alpha)	protein-coding	0.025000	0.606965	
mm_72875.1	chr8	88696958	88697158	+	1	NA	NA	NA	30	NM_001128171	74256	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	0.110000	0.721393	
mm_119716.1	chr14	53881439	53881639	+	1	NA	NA	NA	372390	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.497512	-84(GTGTTTTAAAAG,-,0.00),-83(TGTTTTAAAAGG,-,0.00),-82(GTTTTAAAAGGG,+,0.00)
mm_48985.1	chr6	4755503	4755703	+	1	NA	NA	NA	8297	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.447761	
mm_45597.1	chr5	74879635	74879835	-	1	NA	NA	NA	-69459	NR_045866	619945	Mm.359372	NM_001037908	ENSMUSG00000072874	Gm6116	EG619945	predicted gene 6116	ncRNA	0.020000	0.373134	
mm_72641.1	chr8	84701685	84701885	+	1	NA	NA	NA	328	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.065000	0.681592	
mm_131515.1	chr16	17509128	17509328	+	1	NA	NA	NA	16	NM_001331226	66863	Mm.161726	NM_025808	ENSMUSG00000022761	Lztr1	1200003E21Rik|AI591627|AW550890	leucine-zipper-like transcriptional regulator, 1	protein-coding	0.080000	0.577114	
mm_99392.1	chr11	102145369	102145569	+	1	NA	NA	NA	-44	NM_145829	217214	Mm.31686	NM_145829	ENSMUSG00000048217	Nags	1700120E20Rik|argA	N-acetylglutamate synthase	protein-coding	0.055000	0.631841	
mm_156810.1	chrX	163958176	163958376	+	1	NA	NA	NA	390	NM_009453	22184	Mm.426178	NM_009453	ENSMUSG00000031370	Zrsr2	35kDa|5031411E02Rik|A230052C13Rik|C77286|U2af1-rs2|URP	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2	protein-coding	0.110000	0.696517	
mm_120777.1	chr14	74640816	74641016	+	1	NA	NA	NA	76	NM_172812	15558	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	0.025000	0.557214	
mm_94901.1	chr11	29179339	29179539	+	1	NA	NA	NA	6532	NM_134034	104570	Mm.276386	NM_134034	ENSMUSG00000020463	Smek2	AW011752|AW557776|Ppp4r3b|mKIAA1387	SMEK homolog 2, suppressor of mek1 (Dictyostelium)	protein-coding	0.000000	0.462687	
mm_48698.1	chr5	146896996	146897196	-	1	NA	NA	NA	-51561	NM_025652	66596	Mm.196528	NM_025652	ENSMUSG00000016503	Gtf3a	2010015D03Rik|2610111I01Rik|5330403M05Rik	general transcription factor III A	protein-coding	0.040000	0.512438	
mm_167964.1	chrX	151199912	151200112	+	1	NA	NA	NA	1934	NM_001271678	279561	Mm.441474	NM_001271678	ENSMUSG00000041245	Wnk3	Prkwnk3|Wnk3-ps	WNK lysine deficient protein kinase 3	protein-coding	0.005000	0.383085	
mm_9599.1	chr1	175492411	175492611	-	1	NA	NA	NA	34	NM_011880	24012	Mm.7956	NM_011880	ENSMUSG00000026527	Rgs7	-	regulator of G protein signaling 7	protein-coding	0.160000	0.776119	
mm_98965.1	chr11	98664296	98664496	+	1	NA	NA	NA	45	NM_021347	57911	Mm.458085	NM_021347	ENSMUSG00000017204	Gsdma	BB149167|Gsdm|Gsdm1|Gsdma1|H312E	gasdermin A	protein-coding	0.010000	0.552239	-32(CCCTATAGACAG,+,0.00)
mm_121550.1	chr14	122475305	122475505	+	1	NA	NA	NA	21	NM_009574	22772	Mm.308936	NM_009574	ENSMUSG00000061524	Zic2	HPE5|Ku	zinc finger protein of the cerebellum 2	protein-coding	0.095000	0.711443	-33(CCTTTAATACAC,+,0.00)
mm_171021.1	chr2	83989659	83989859	+	1	NA	NA	NA	-48533	NM_027964	71861	Mm.116957	NM_027964	ENSMUSG00000034552	Zswim2	1700025P14Rik|4933437F18Rik|MEX	zinc finger SWIM-type containing 2	protein-coding	0.050000	0.442786	
mm_48332.1	chr5	139024498	139024698	-	1	NA	NA	NA	-29645	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.005000	0.462687	-51(TTTTTTAAAGTC,+,0.00)
mm_154962.1	chrX	36883031	36883231	+	1	NA	NA	NA	8836	NM_019668	22209	Mm.395649	NM_019668	ENSMUSG00000016308	Ube2a	HHR6A|HR6A|Mhr6a	ubiquitin-conjugating enzyme E2A	protein-coding	0.020000	0.427861	
mm_61978.1	chr7	90887249	90887449	+	1	NA	NA	NA	-203437	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.050000	0.547264	
mm_169799.1	chr16	16820063	16820263	-	1	NA	NA	NA	33	NM_001258458	665562	Mm.444358	NM_001258458		Rpl31-ps12	EG665562|Gm7689	ribosomal protein L31, pseudogene 1 2	protein-coding	0.035000	0.467662	
mm_85147.1	chr9	95857770	95857970	-	1	NA	NA	NA	12	NM_001271569	73410	Mm.443314	NM_028533	ENSMUSG00000096655	1700065D16Rik	-	RIKEN cDNA 1700065D16 gene	protein-coding	0.155000	0.766169	
mm_72128.1	chr8	71780497	71780697	+	1	NA	NA	NA	-54916	NM_028715	74015	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.065000	0.532338	-31(CCCTATAAAAAG,-,0.00)
mm_86588.1	chr10	13108720	13108920	+	1	NA	NA	NA	17975	NR_131912	338438		NR_131912		Hymai	-	hydatidiform mole associated and imprinted transcript	ncRNA	0.025000	0.417910	
mm_122910.1	chr14	54956477	54956677	-	1	NA	NA	NA	-7435	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.055000	0.616915	
mm_71095.1	chr8	34821471	34821671	+	1	NA	NA	NA	13961	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.005000	0.467662	
mm_20305.1	chr2	127143345	127143545	-	1	NA	NA	NA	12	NM_001163527	73338	Mm.57559	NM_001163527	ENSMUSG00000074825	Itpripl1	1700041B20Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 1	protein-coding	0.070000	0.671642	
mm_8097.1	chr1	135847917	135848117	-	1	NA	NA	NA	7156	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.035000	0.547264	
mm_63163.1	chr7	123982731	123982931	+	1	NA	NA	NA	-350	NM_001252072	628779	Mm.40210	NM_001252072	ENSMUSG00000078591	Hs3st4	EG628779|Gm6915	heparan sulfate (glucosamine) 3-O-sulfotransferase 4	protein-coding	0.155000	0.796020	
mm_93690.1	chr10	117818485	117818685	-	1	NA	NA	NA	-25880	NM_134010	103468	Mm.12568	NM_134010	ENSMUSG00000052798	Nup107	AW541137|C76801	nucleoporin 107	protein-coding	0.015000	0.427861	
mm_63584.1	chr7	128126694	128126894	+	1	NA	NA	NA	-2774	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.030000	0.502488	
mm_33345.1	chr4	129312476	129312676	+	1	NA	NA	NA	22794	NM_009030	19646	Mm.12145	NM_009030	ENSMUSG00000057236	Rbbp4	RBAP48|mRbAp48	retinoblastoma binding protein 4	protein-coding	0.015000	0.457711	
mm_172892.1	chr9	56160889	56161089	-	1	NA	NA	NA	81	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.125000	0.731343	
mm_169737.1	chr15	83536659	83536859	-	1	NA	NA	NA	9897	NM_007546	12124	Mm.267006	NM_007546	ENSMUSG00000016758	Bik	Biklk|Blk|Nbk	BCL2-interacting killer	protein-coding	0.025000	0.447761	-36(CTGTATAAAAAG,-,0.00)
mm_61058.1	chr7	49911964	49912164	+	1	NA	NA	NA	364	NM_148931	104245	Mm.207053	NM_148931	ENSMUSG00000039728	Slc6a5	Glyt2|prestin	solute carrier family 6 (neurotransmitter transporter, glycine), member 5	protein-coding	0.085000	0.661692	
mm_115301.1	chr13	112100830	112101030	+	1	NA	NA	NA	-187521	NM_001168403	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.050000	0.631841	
mm_104083.1	chr11	86602178	86602378	-	1	NA	NA	NA	-18120	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.015000	0.383085	
mm_84968.1	chr9	84114394	84114594	-	1	NA	NA	NA	165713	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.030000	0.427861	
mm_74100.1	chr8	122709333	122709533	+	1	NA	NA	NA	-10324	NM_009824	12398	Mm.194339	NM_009824	ENSMUSG00000006362	Cbfa2t3	A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2	core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)	protein-coding	0.030000	0.656716	
mm_33341.1	chr4	129287579	129287779	+	1	NA	NA	NA	58	NM_023485	68828	Mm.132243	NM_023485	ENSMUSG00000001333	Sync	1110057H03Rik|SNIP4	syncoilin	protein-coding	0.160000	0.756219	
mm_83032.1	chr9	37255442	37255642	-	1	NA	NA	NA	196	NM_020258	56857	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.045000	0.592040	
mm_108435.1	chr12	82339376	82339576	+	1	NA	NA	NA	28127	NM_172579	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.030000	0.477612	-40(CTTTAAATAGCA,+,0.00)
mm_141654.1	chr17	33702200	33702400	-	1	NA	NA	NA	16377	NM_145486	224703	Mm.311439	NM_145486	ENSMUSG00000079557	March2	9530046H09Rik|MARCH-II	membrane-associated ring finger (C3HC4) 2	protein-coding	0.005000	0.417910	
mm_92842.1	chr10	81508070	81508270	-	1	NA	NA	NA	-8033	NM_010102	13611	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0.010000	0.532338	
mm_94680.1	chr11	17953908	17954108	+	1	NA	NA	NA	38	NR_131915	102633673	Mm.396603	NR_131915	ENSMUSG00000086468	Etaa1os	2900053O20Rik|4930542E09Rik	Ewing tumor-associated antigen 1, opposite strand	ncRNA	0.040000	0.552239	
mm_7309.1	chr1	98047660	98047860	-	1	NA	NA	NA	33	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA	0.015000	0.447761	
mm_19875.1	chr2	114048175	114048375	-	1	NA	NA	NA	4600	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.015000	0.442786	-54(TACTTTAAAAAG,-,0.00)
mm_47785.1	chr5	132069210	132069410	-	1	NA	NA	NA	189041	NR_040704	75369	Mm.389696	NR_040704	ENSMUSG00000105773	4930563F08Rik	-	RIKEN cDNA 4930563F08 gene	ncRNA	0.000000	0.373134	
mm_29172.1	chr3	106513984	106514184	-	1	NA	NA	NA	28044	NM_028110	72121	Mm.14816	NM_028110	ENSMUSG00000027901	Dennd2d	2010308M01Rik|AI451421	DENN/MADD domain containing 2D	protein-coding	0.005000	0.378109	-24(CCCCATAAAAAA,-,0.00)
mm_72853.1	chr8	88329564	88329764	+	1	NA	NA	NA	32527	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.015000	0.388060	-6(TTTTTTAAACCC,+,0.00)
mm_167056.1	chr7	89538414	89538614	+	1	NA	NA	NA	-20928	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.015000	0.437811	
mm_97049.1	chr11	72438570	72438770	+	1	NA	NA	NA	-2708	NM_016776	18432	Mm.147946	NM_016776	ENSMUSG00000040463	Mybbp1a	AL024407|AU019902|P160|p160MBP|p67MBP	MYB binding protein (P160) 1a	protein-coding	0.015000	0.512438	
mm_64026.1	chr7	140768997	140769197	+	1	NA	NA	NA	5265	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.020000	0.462687	
mm_3503.1	chr1	150106932	150107132	+	1	NA	NA	NA	7001	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.025000	0.417910	
mm_30254.1	chr3	146615529	146615729	-	1	NA	NA	NA	-31	NM_019957	56629	Mm.25853	NM_019957	ENSMUSG00000028185	Dnase2b	AI526873|Dlad|DnaseIIb	deoxyribonuclease II beta	protein-coding	0.015000	0.497512	
mm_61958.1	chr7	90211619	90211819	+	1	NA	NA	NA	53713	NM_029256	75338	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.005000	0.288557	
mm_61202.1	chr7	64001811	64002011	+	1	NA	NA	NA	-62996	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.020000	0.552239	
mm_105678.1	chr11	107574423	107574623	-	1	NA	NA	NA	26563	NM_198298	78455	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	0.015000	0.472637	
mm_34903.1	chr4	155638485	155638685	+	1	NA	NA	NA	13716	NM_007661	12537	Mm.267410	NM_007661	ENSMUSG00000029062	Cdk11b	AA989746|CDK11-p110|CDK11-p46|CDK11-p58|Cdc11b|Cdc2l1|Cdc2l2|Cdk11|p58	cyclin-dependent kinase 11B	protein-coding	0.020000	0.547264	
mm_77908.1	chr9	7349143	7349343	+	1	NA	NA	NA	1869	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.432836	
mm_153186.1	chr19	34500057	34500257	-	1	NA	NA	NA	-25022	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.020000	0.393035	
mm_73247.1	chr8	104264372	104264572	+	1	NA	NA	NA	13611	NM_001286383	75458	Mm.269219	NM_029295	ENSMUSG00000054400	Cklf	1700001C14Rik|1810018M11Rik|A730028G07Rik|C32|CKLF1|CKLF3|CKLF4|CKLF5|Cklf2|Cklf6|HSPC224|UCK-1	chemokine-like factor	protein-coding	0.040000	0.597015	
mm_51528.1	chr6	83186095	83186295	+	1	NA	NA	NA	249	NM_001347310	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.060000	0.636816	
mm_56221.1	chr6	89595496	89595696	-	1	NA	NA	NA	56	NM_025351	66098	Mm.20313	NM_025351	ENSMUSG00000030086	Chchd6	0710001P09Rik|1700021B03Rik	coiled-coil-helix-coiled-coil-helix domain containing 6	protein-coding	0.105000	0.696517	
mm_76246.1	chr8	83593261	83593461	-	1	NA	NA	NA	1130	NM_027179	106529	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	0.000000	0.402985	
mm_64626.1	chr7	3677442	3677642	-	1	NA	NA	NA	11	NM_181820	353499	Mm.360398	NM_181820	ENSMUSG00000019734	Tmc4	-	transmembrane channel-like gene family 4	protein-coding	0.030000	0.616915	
mm_150408.1	chr19	36890703	36890903	+	1	NA	NA	NA	28796	NM_028263	72514	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0.010000	0.442786	
mm_119150.1	chr14	31494980	31495180	+	1	NA	NA	NA	1	NM_028932	74427	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	0.100000	0.656716	
mm_108926.1	chr12	100986530	100986730	+	1	NA	NA	NA	35138	NR_035421	100316805		NR_035421	ENSMUSG00000080575	Mir1190	Mirn1190|mmu-mir-1190	microRNA 1190	ncRNA	0.010000	0.606965	
mm_129443.1	chr15	78529552	78529752	-	1	NA	NA	NA	-1	NM_028331	72709	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	0.040000	0.676617	
mm_89280.1	chr10	87864249	87864449	+	1	NA	NA	NA	3238	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.010000	0.363184	
mm_162069.1	chrX	14211048	14211248	+	1	NA	NA	NA	0	NM_001034100	385328	Mm.275681	NM_001034100	ENSMUSG00000078346	H2al1n	EG385328|Gm5382	H2A histone family member L1N	protein-coding	0.010000	0.457711	
mm_75357.1	chr8	45261935	45262135	-	1	NA	NA	NA	-4	NM_028066	109821	Mm.33326	NM_028066	ENSMUSG00000031645	F11	1600027G01Rik|AI503996|Cf11|FXI|PTA	coagulation factor XI	protein-coding	0.030000	0.447761	
mm_130702.1	chr15	100687128	100687328	-	1	NA	NA	NA	692	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.060000	0.601990	
mm_137528.1	chr17	27529892	27530092	+	1	NA	NA	NA	-26459	NM_001291045	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.025000	0.482587	
mm_155315.1	chrX	61785658	61785858	+	1	NA	NA	NA	76142	NM_001018087	434784	Mm.23468	NM_001018087	ENSMUSG00000057615	Ldoc1	Gm366|Mar7|Mart7|Sirh7	leucine zipper, down-regulated in cancer 1	protein-coding	0.030000	0.457711	
mm_46185.1	chr5	97392278	97392478	-	1	NA	NA	NA	-39	NR_045981	75814	Mm.444705	NR_045981		4930467D21Rik	4930448L09Rik|BB013444	RIKEN cDNA 4930467D21 gene	ncRNA	0.080000	0.646766	
mm_2326.1	chr1	92704900	92705100	+	1	NA	NA	NA	-56159	NM_153114	260301	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.000000	0.527363	
mm_1067.1	chr1	59150845	59151045	+	1	NA	NA	NA	10691	NM_145143	227157	Mm.474049	NM_145143	ENSMUSG00000079550	Mpp4	Dlg6	membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)	protein-coding	0.010000	0.482587	
mm_76920.1	chr8	105933471	105933671	-	1	NA	NA	NA	291	NM_023182	109660	Mm.2745	NM_023182	ENSMUSG00000031896	Ctrl	0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366	chymotrypsin-like	protein-coding	0.010000	0.492537	34(GCCTAGAAAAAC,-,0.00)
mm_57752.1	chr6	129182739	129182939	-	1	NA	NA	NA	2224	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.000000	0.452736	
mm_149725.1	chr19	21784706	21784906	+	1	NA	NA	NA	6466	NM_031997	83921	Mm.329776	NM_031997	ENSMUSG00000024754	Tmem2	-	transmembrane protein 2	protein-coding	0.010000	0.527363	
mm_140180.1	chr17	80943893	80944093	+	1	NA	NA	NA	-639	NM_026516	68027	Mm.357108	NM_026516	ENSMUSG00000024245	Tmem178	2810417M05Rik|Tmem178a	transmembrane protein 178	protein-coding	0.020000	0.487562	-31(GTCTAGAAAAGA,-,0.00)
mm_9025.1	chr1	166409650	166409850	-	1	NA	NA	NA	78	NM_175170	71592	Mm.192094	NM_175170	ENSMUSG00000040596	Pogk	9130401E23Rik|BASS2|mKIAA1513	pogo transposable element with KRAB domain	protein-coding	0.155000	0.781095	
mm_55286.1	chr6	54541620	54541820	-	1	NA	NA	NA	24662	NM_027268	69938	Mm.41557	NM_027268	ENSMUSG00000019124	Scrn1	2810019K23Rik|6330535A03Rik|AI852905|SES1|mKIAA0193	secernin 1	protein-coding	0.010000	0.353234	
mm_62601.1	chr7	105736655	105736855	+	1	NA	NA	NA	30	NM_010562	16202	Mm.274846	NM_010562	ENSMUSG00000030890	Ilk	AA511515|ESTM24	integrin linked kinase	protein-coding	0.105000	0.721393	
mm_87475.1	chr10	51491987	51492187	+	1	NA	NA	NA	1189	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.000000	0.467662	
mm_63085.1	chr7	122289229	122289429	+	1	NA	NA	NA	204	NM_008855	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.150000	0.796020	
mm_87799.1	chr10	60300047	60300247	+	1	NA	NA	NA	15686	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.532338	
mm_30224.1	chr3	145195717	145195917	-	1	NA	NA	NA	77217	NM_025714	52184	Mm.259105	NM_025714	ENSMUSG00000028256	Odf2l	4733401D09Rik|9630045K08Rik|D3Ertd250e	outer dense fiber of sperm tails 2-like	protein-coding	0.010000	0.447761	
mm_117030.1	chr13	58274064	58274264	-	1	NA	NA	NA	24	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.205000	0.860697	
mm_148006.1	chr18	67775136	67775336	-	1	NA	NA	NA	360	NM_001039088	72124	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	0.175000	0.796020	
mm_28190.1	chr3	88139350	88139550	-	1	NA	NA	NA	-2922	NM_001310587	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.030000	0.572139	
mm_109210.1	chr12	108677572	108677772	+	1	NA	NA	NA	19052	NR_029771	723909		NR_029771	ENSMUSG00000065436	Mir342	Mirn342|mmu-mir-342	microRNA 342	ncRNA	0.005000	0.467662	
mm_28972.1	chr3	101012583	101012783	-	1	NA	NA	NA	16812	NM_001167906	630146	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0.010000	0.467662	-63(ATCTTTATAAAG,-,0.00),-61(CTTTATAAAGAT,+,0.00)
mm_155207.1	chrX	56779457	56779657	+	1	NA	NA	NA	-126	NM_001077362	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.005000	0.447761	
mm_116281.1	chr13	34990759	34990959	-	1	NA	NA	NA	3285	NM_011868	23986	Mm.491141	NM_011868	ENSMUSG00000021417	Eci2	Acbd2|Drs1|Hca88|Peci	enoyl-Coenzyme A delta isomerase 2	protein-coding	0.000000	0.422886	-28(GTTTTTAGAGTC,+,0.00)
mm_137166.1	chr17	23807967	23808167	+	1	NA	NA	NA	4880	NM_175229	75956	Mm.5222	NM_175229	ENSMUSG00000039218	Srrm2	5033413A03Rik|AA410130|SRm300|mKIAA0324	serine/arginine repetitive matrix 2	protein-coding	0.015000	0.467662	
mm_68469.1	chr7	110648675	110648875	-	1	NA	NA	NA	21106	NM_009627	11535	Mm.1408	NM_009627	ENSMUSG00000030790	Adm	AM	adrenomedullin	protein-coding	0.025000	0.587065	
mm_128077.1	chr15	27663543	27663743	-	1	NA	NA	NA	17899	NM_001242424	223433	Mm.266485	NM_198301	ENSMUSG00000056069	Fam105a	9830126M18	family with sequence similarity 105, member A	protein-coding	0.005000	0.442786	
mm_99406.1	chr11	102248814	102249014	+	1	NA	NA	NA	32	NM_153544	217216	Mm.247335	NM_153544	ENSMUSG00000034773	BC030867	-	cDNA sequence BC030867	protein-coding	0.065000	0.542289	-65(TTCCCTTTAAGG,-,0.00),-64(TCCCTTTAAGGG,-,0.00),-63(CCCTTTAAGGGG,+,0.00),-63(CCCTTTAAGGGG,-,0.00),-62(CCTTTAAGGGGG,+,0.00),29(CGGTCTTAAAGA,-,0.00)
mm_136647.1	chr17	5841302	5841502	+	1	NA	NA	NA	22	NM_025664	66616	Mm.89515	NM_025664	ENSMUSG00000002365	Snx9	2700073N08Rik|SDP1|SH3PX1	sorting nexin 9	protein-coding	0.165000	0.791045	
mm_113430.1	chr13	34734750	34734950	+	1	NA	NA	NA	-4792	NM_138746	108161	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.005000	0.472637	
mm_74747.1	chr8	18990954	18991154	-	1	NA	NA	NA	1	NM_181683	353320	Mm.270483	NM_181683	ENSMUSG00000053695	Defb37	BD-37	defensin beta 37	protein-coding	0.000000	0.412935	
mm_116337.1	chr13	38173759	38173959	-	1	NA	NA	NA	22565	NM_023842	109620	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding	0.025000	0.457711	
mm_137764.1	chr17	29490511	29490711	+	1	NA	NA	NA	-434	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.120000	0.776119	
mm_32813.1	chr4	117153732	117153932	+	1	NA	NA	NA	742	NR_028524	100217424		NR_028524	ENSMUSG00000065680	Snord38a	MBII-329	small nucleolar RNA, C/D box 38A	snoRNA	0.010000	0.487562	
mm_126166.1	chr15	78531002	78531202	+	1	NA	NA	NA	-1451	NM_028331	72709	Mm.34776	NM_028331	ENSMUSG00000022440	C1qtnf6	2810036M19Rik|CTRP6	C1q and tumor necrosis factor related protein 6	protein-coding	0.030000	0.601990	
mm_24326.1	chr3	89450295	89450495	+	1	NA	NA	NA	-4146	NM_001310640	68603	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0.010000	0.452736	
mm_89044.1	chr10	82860164	82860364	+	1	NA	NA	NA	-77	NM_001042514	50493	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	0.055000	0.502488	
mm_151698.1	chr19	4439319	4439519	-	1	NA	NA	NA	24	NM_007485	11854	Mm.27701	NM_007485	ENSMUSG00000041845	Rhod	AI326383|Arhd|Rho|RhoHP1|RhoM	ras homolog family member D	protein-coding	0.140000	0.791045	
mm_7614.1	chr1	126693998	126694198	-	1	NA	NA	NA	136534	NM_001081756	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.005000	0.363184	45(CCTTTAAAACAG,+,0.00)
mm_20155.1	chr2	121806935	121807135	-	1	NA	NA	NA	22	NM_172673	228564	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|5830442F04|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	0.065000	0.676617	
mm_27253.1	chr3	37125804	37126004	-	1	NA	NA	NA	50	NM_008366	16183	Mm.14190	NM_008366	ENSMUSG00000027720	Il2	Il-2	interleukin 2	protein-coding	0.015000	0.497512	
mm_27791.1	chr3	75482049	75482249	-	1	NA	NA	NA	74703	NM_019745	56426	Mm.316473	NM_019745	ENSMUSG00000027835	Pdcd10	2410003B13Rik|Ccm3|Tfa15|Tfar15	programmed cell death 10	protein-coding	0.010000	0.477612	
mm_148878.1	chr19	6497985	6498185	+	1	NA	NA	NA	44985	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.100000	0.706468	
mm_133887.1	chr16	96568952	96569152	+	1	NA	NA	NA	101446	NM_008791	18546	Mm.5023	NM_008791	ENSMUSG00000090223	Pcp4	P16Rimb19|Pcp-4|Pep19	Purkinje cell protein 4	protein-coding	0.010000	0.487562	
mm_153062.1	chr19	32196270	32196470	-	1	NA	NA	NA	14643	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.010000	0.457711	
mm_135809.1	chr16	57391373	57391573	-	1	NA	NA	NA	38196	NM_001040397	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.120000	0.671642	
mm_43203.1	chr5	129096656	129096856	+	1	NA	NA	NA	6	NM_001347486	243277	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding	0.030000	0.611940	
mm_61420.1	chr7	73617923	73618123	+	1	NA	NA	NA	-59628	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.060000	0.616915	
mm_136979.1	chr17	16557125	16557325	+	1	NA	NA	NA	-506878	NM_001005358	449000	Mm.483718	NM_001005358	ENSMUSG00000096696	Zfp960	-	zinc finger protein 960	protein-coding	0.015000	0.472637	
mm_137448.1	chr17	26532820	26533020	+	1	NA	NA	NA	-24448	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.015000	0.547264	
mm_152557.1	chr19	11485247	11485447	-	1	NA	NA	NA	-6691	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.015000	0.417910	
mm_60246.1	chr7	43768886	43769086	+	1	NA	NA	NA	-114	NM_027097	69511	Mm.20163	NM_027097	ENSMUSG00000044430	Klk12	2310008B01Rik|AI324852|KLK-L5	kallikrein related-peptidase 12	protein-coding	0.015000	0.527363	
mm_156545.1	chrX	151344084	151344284	+	1	NA	NA	NA	-39	NM_198105	207375	Mm.391339	NM_198105	ENSMUSG00000025262	Fam120c	D930001I21Rik|ORF34	family with sequence similarity 120, member C	protein-coding	0.110000	0.711443	
mm_28770.1	chr3	95904604	95904804	-	1	NA	NA	NA	-65	NM_011797	23831	Mm.489647	NM_011797	ENSMUSG00000038526	Car14	AW536446|Ca14	carbonic anhydrase 14	protein-coding	0.040000	0.601990	-37(CGCTATTTAAGG,-,0.00),32(CACCTTAAAAGC,-,0.00),34(CCTTAAAAGCGG,+,0.00)
mm_47461.1	chr5	123666605	123666805	-	1	NA	NA	NA	17656	NM_019765	56430	Mm.241109	NM_019765	ENSMUSG00000049550	Clip1	1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin	CAP-GLY domain containing linker protein 1	protein-coding	0.005000	0.467662	
mm_122015.1	chr14	27348409	27348609	-	1	NA	NA	NA	12472	NM_001289687	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.005000	0.502488	
mm_83735.1	chr9	51076946	51077146	-	1	NA	NA	NA	48	NM_001033534	244864	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0.045000	0.641791	
mm_118755.1	chr14	22371608	22371808	+	1	NA	NA	NA	171090	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.020000	0.462687	
mm_130451.1	chr15	98543816	98544016	-	1	NA	NA	NA	-9647	NM_001289440	69612	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	0.020000	0.507463	
mm_150192.1	chr19	32665781	32665981	+	1	NA	NA	NA	45876	NM_011864	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.010000	0.417910	
mm_153880.1	chr19	46929125	46929325	-	1	NA	NA	NA	33126	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.005000	0.407960	
mm_163067.1	chr11	67248483	67248683	+	1	NA	NA	NA	10771	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.025000	0.537313	
mm_54256.1	chr6	28262407	28262607	-	1	NA	NA	NA	-906	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.035000	0.527363	
mm_136264.1	chr16	91043416	91043616	-	1	NA	NA	NA	863	NM_026110	67367	Mm.347	NM_026110	ENSMUSG00000022974	Paxbp1	1810007M14Rik|C21orf66|Gcfc|Gcfc1|Pax3/7bp	PAX3 and PAX7 binding protein 1	protein-coding	0.030000	0.497512	
mm_129303.1	chr15	77367045	77367245	-	1	NA	NA	NA	31965	NM_029419	75761	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	0.035000	0.547264	
mm_130816.1	chr15	101763462	101763662	-	1	NA	NA	NA	-58	NR_033444	406222	Mm.359153	NM_001003669	ENSMUSG00000067596	Krt74	K74|Kb37	keratin 74	pseudo	0.015000	0.542289	-35(GGGGATAAAAGG,-,0.00)
mm_128230.1	chr15	36598011	36598211	-	1	NA	NA	NA	10862	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.030000	0.487562	
mm_63459.1	chr7	127561636	127561836	+	1	NA	NA	NA	513	NM_001304267	105180375	Mm.428042	NM_001304267	ENSMUSG00000106715	Tmem265	-	transmembrane protein 265	protein-coding	0.010000	0.522388	
mm_129917.1	chr15	84185071	84185271	-	1	NA	NA	NA	-7062	NM_178614	68653	Mm.290725	NM_178614	ENSMUSG00000022437	Samm50	1110030L07Rik	SAMM50 sorting and assembly machinery component	protein-coding	0.020000	0.507463	-33(ATCTCTTAAAGC,-,0.00),-16(GGCCATATAAGG,-,0.00)
mm_133875.1	chr16	96386234	96386434	+	1	NA	NA	NA	24570	NM_028078	72058	Mm.119714	NM_028078	ENSMUSG00000000159	Igsf5	2010003D20Rik|JCAM|Jam4	immunoglobulin superfamily, member 5	protein-coding	0.015000	0.487562	
mm_45034.1	chr5	39614884	39615084	-	1	NA	NA	NA	-11410	NR_045416	75095	Mm.332354	NR_045416	ENSMUSG00000106741	4930513D17Rik	-	RIKEN cDNA 4930513D17 gene	ncRNA	0.020000	0.562189	
mm_47661.1	chr5	125588935	125589135	-	1	NA	NA	NA	56617	NM_001190352	208151	Mm.40397	NM_001190352	ENSMUSG00000070498	Tmem132b	AK220418|mKIAA1786	transmembrane protein 132B	protein-coding	0.000000	0.562189	
mm_171545.1	chr4	147021842	147022042	+	1	NA	NA	NA	92	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.030000	0.547264	
mm_160393.1	chr8	58911897	58912097	+	1	NA	NA	NA	242	NM_173411	234290	Mm.39244	NM_173411	ENSMUSG00000049946	BC030500	-	cDNA sequence BC030500	protein-coding	0.025000	0.492537	
mm_33937.1	chr4	136945517	136945717	+	1	NA	NA	NA	11199	NM_007939	13842	Mm.1390	NM_007939	ENSMUSG00000028661	Epha8	AW047546|Eek|Hek3|mKIAA1459	Eph receptor A8	protein-coding	0.040000	0.636816	
mm_113457.1	chr13	35958779	35958979	+	1	NA	NA	NA	-9027	NM_029628	76487	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	0.000000	0.492537	
mm_156930.1	chrX	169320552	169320752	+	1	NA	NA	NA	-280	NM_001331049	15159	Mm.284033	NM_008222	ENSMUSG00000031352	Hccs	-	holocytochrome c synthetase	protein-coding	0.100000	0.611940	
mm_64809.1	chr7	6707462	6707662	-	1	NA	NA	NA	802	NR_023846	100169889	Mm.491213	NR_023846		Peg3os	Apeg3|Peg3as	Peg3 opposite strand	ncRNA	0.030000	0.537313	
mm_83916.1	chr9	56418741	56418941	-	1	NA	NA	NA	-5	NM_025812	66867	Mm.150856	NM_025812	ENSMUSG00000032329	Hmg20a	1200004E06Rik|5730490E10Rik|Hmgxb1|Ibraf	high mobility group 20A	protein-coding	0.030000	0.507463	
mm_43189.1	chr5	128735990	128736190	+	1	NA	NA	NA	-156	NM_021311	57749	Mm.272720	NM_021311	ENSMUSG00000029423	Piwil1	MIWI	piwi-like RNA-mediated gene silencing 1	protein-coding	0.060000	0.651741	
mm_93360.1	chr10	103144826	103145026	-	1	NA	NA	NA	91396	NM_001163559	74978	Mm.483817	NM_029134	ENSMUSG00000019892	Lrriq1	4930503E15Rik|Gm1557	leucine-rich repeats and IQ motif containing 1	protein-coding	0.010000	0.343284	-80(GCTTAAATAGAT,+,0.00)
mm_48432.1	chr5	140622740	140622940	-	1	NA	NA	NA	15499	NM_008494	16848	Mm.12834	NM_008494	ENSMUSG00000029570	Lfng	AW061165	LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.015000	0.611940	
mm_5136.1	chr1	9721281	9721481	-	1	NA	NA	NA	-21172	NM_008651	17864	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	0.005000	0.318408	
mm_140355.1	chr17	86831321	86831521	+	1	NA	NA	NA	77557	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.010000	0.402985	
mm_158865.1	chrY	2519390	2519590	+	1	NA	NA	NA	-79609	NM_001113395	100042840	Mm.472681	NM_001113395	ENSMUSG00000095573	H2al2b	ENSMUSG00000069034|Gm16501|H2al2y	H2A histone family member L2B	protein-coding	0.005000	0.497512	
mm_50757.1	chr6	53448886	53449086	+	1	NA	NA	NA	-124388	NM_172728	231991	Mm.227444	NM_172728	ENSMUSG00000053007	Creb5	9430076C15Rik|CRE-BPa|Crebpa|D430026C09Rik	cAMP responsive element binding protein 5	protein-coding	0.010000	0.427861	
mm_110040.1	chr12	17176481	17176681	-	1	NA	NA	NA	307	NM_201531	382571	Mm.40173	NM_201531	ENSMUSG00000051726	Kcnf1	Gm1182|Kv5.1	potassium voltage-gated channel, subfamily F, member 1	protein-coding	0.070000	0.577114	
mm_81058.1	chr9	106148220	106148420	+	1	NA	NA	NA	-5804	NR_029549	387153		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	0.010000	0.616915	
mm_55825.1	chr6	83115293	83115493	-	1	NA	NA	NA	-113	NM_020619	57377	Mm.28188	NM_020619	ENSMUSG00000030036	Mogs	1810017N02Rik|AI181835|Gcs1	mannosyl-oligosaccharide glucosidase	protein-coding	0.060000	0.562189	
mm_108841.1	chr12	97170939	97171139	+	1	NA	NA	NA	1088420	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.000000	0.318408	
mm_141968.1	chr17	35121915	35122115	-	1	NA	NA	NA	38	NM_001303446	13001	Mm.378901	NM_009975	ENSMUSG00000024387	Csnk2b	CK II beta	casein kinase 2, beta polypeptide	protein-coding	0.060000	0.587065	
mm_59271.1	chr7	24901338	24901538	+	1	NA	NA	NA	-1548	NM_001130150	16801	Mm.3181	NM_008488	ENSMUSG00000040940	Arhgef1	Lbcl2|Lsc	Rho guanine nucleotide exchange factor (GEF) 1	protein-coding	0.005000	0.572139	
mm_27216.1	chr3	35933179	35933379	-	1	NA	NA	NA	-313	NM_001205361	114893	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.020000	0.522388	
mm_65210.1	chr7	19697547	19697747	-	1	NA	NA	NA	751	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.025000	0.547264	
mm_8211.1	chr1	138136421	138136621	-	1	NA	NA	NA	38605	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.040000	0.502488	-53(TCCTATAAAGAC,+,0.00),-53(TCCTATAAAGAC,-,0.00)
mm_14417.1	chr2	130450184	130450384	+	1	NA	NA	NA	6	NM_001163688	19262	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	0.115000	0.716418	
mm_120233.1	chr14	62886465	62886665	+	1	NA	NA	NA	21023	NR_105860	102465311		NR_105860	ENSMUSG00000098858	Mir6541	Gm27311|mmu-mir-6541	microRNA 6541	ncRNA	0.010000	0.437811	
mm_34976.1	chr4	156012897	156013097	+	1	NA	NA	NA	-698	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.005000	0.457711	
mm_52814.1	chr6	121343841	121344041	+	1	NA	NA	NA	865	NM_001347433	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.015000	0.537313	
mm_97631.1	chr11	78959743	78959943	+	1	NA	NA	NA	25081	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.005000	0.542289	
mm_17422.1	chr2	27426927	27427127	-	1	NA	NA	NA	581	NR_133905	22325	Mm.179011	NM_009500	ENSMUSG00000009621	Vav2	2810040F13Rik|AI847175|Vav-2	vav 2 oncogene	protein-coding	0.130000	0.781095	
mm_107210.1	chr12	26444457	26444657	+	1	NA	NA	NA	11895	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.010000	0.363184	
mm_34702.1	chr4	152096607	152096807	+	1	NA	NA	NA	-12	NM_001285999	269608	Mm.332102	NM_001004156	ENSMUSG00000039713	Plekhg5	BC023181|Syx	pleckstrin homology domain containing, family G (with RhoGef domain) member 5	protein-coding	0.055000	0.666667	
mm_149536.1	chr19	12465710	12465910	+	1	NA	NA	NA	5031	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.005000	0.482587	
mm_161656.1	chr17	6961045	6961245	-	1	NA	NA	NA	11	NM_147155	380608	Mm.371734	NM_147155	ENSMUSG00000052031	Tagap1	2610315E15Rik|AA415005|FKSG15	T cell activation GTPase activating protein 1	protein-coding	0.140000	0.711443	
mm_112249.1	chr12	113611546	113611746	-	1	NA	NA	NA	67738	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.000000	0.517413	
mm_16896.1	chr2	13271208	13271408	-	1	NA	NA	NA	107	NM_009105	20163	Mm.905	NM_009105	ENSMUSG00000026727	Rsu1	RsuI|rsp-1	Ras suppressor protein 1	protein-coding	0.055000	0.597015	
mm_117640.1	chr13	92523170	92523370	-	1	NA	NA	NA	7540	NM_173392	218441	Mm.259585	NM_173392	ENSMUSG00000021706	Zfyve16	AI035632|B130024H06Rik|B130031L15|mKIAA0305	zinc finger, FYVE domain containing 16	protein-coding	0.010000	0.422886	
mm_89016.1	chr10	82048054	82048254	+	1	NA	NA	NA	27	NM_001024626	408062	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	0.050000	0.592040	
mm_112299.1	chr12	114683015	114683215	-	1	NA	NA	NA	-169421	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.427861	
mm_90809.1	chr10	7768449	7768649	-	1	NA	NA	NA	12368	NM_145418	215751	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	0.015000	0.398010	
mm_6390.1	chr1	72852132	72852332	-	1	NA	NA	NA	22633	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.025000	0.572139	
mm_20442.1	chr2	129309053	129309253	-	1	NA	NA	NA	819	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.005000	0.437811	
mm_22394.1	chr2	181227927	181228127	-	1	NA	NA	NA	8011	NM_199312	332713	Mm.23349	NM_199312	ENSMUSG00000047841	BC051628	1700026M20Rik|Fndc11	cDNA sequence BC051628	protein-coding	0.000000	0.542289	89(CCTTTTCTACTG,+,0.00)
mm_7108.1	chr1	89930596	89930796	-	1	NA	NA	NA	480	NM_010262	14472	Mm.204730	NM_010262	ENSMUSG00000034486	Gbx2	D130058E05Rik|Gbx-2|MMoxA|Stra7	gastrulation brain homeobox 2	protein-coding	0.105000	0.646766	
mm_13393.1	chr2	103969673	103969873	+	1	NA	NA	NA	216	NM_001142336	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.040000	0.532338	
mm_23813.1	chr3	79886790	79886990	+	1	NA	NA	NA	960	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.030000	0.542289	
mm_19584.1	chr2	101797576	101797776	-	1	NA	NA	NA	31	NM_175181	72446	Mm.24138	NM_175181	ENSMUSG00000032841	Prr5l	2600010E01Rik|4833411O04Rik|Protor-2|Protor2	proline rich 5 like	protein-coding	0.070000	0.636816	
mm_131866.1	chr16	23157119	23157319	+	1	NA	NA	NA	10683	NM_009605	11450	Mm.3969	NM_009605	ENSMUSG00000022878	Adipoq	30kDa|APN|Acdc|Acrp30|Ad|GBP28|adipo|apM1	adiponectin, C1Q and collagen domain containing	protein-coding	0.045000	0.547264	
mm_11984.1	chr2	55435710	55435910	+	1	NA	NA	NA	-160	NM_001304810	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.025000	0.577114	
mm_38917.1	chr4	150001200	150001400	-	1	NA	NA	NA	1936	NM_001291004	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.015000	0.601990	
mm_56010.1	chr6	86516130	86516330	-	1	NA	NA	NA	9935	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1	poly(rC) binding protein 1	protein-coding	0.000000	0.517413	
mm_119771.1	chr14	54174861	54175061	+	1	NA	NA	NA	78968	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.005000	0.378109	
mm_121752.1	chr14	19278095	19278295	-	1	NA	NA	NA	324392	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.010000	0.472637	26(CCTTTTCTGGGG,+,0.00)
mm_38209.1	chr4	135873763	135873963	-	1	NA	NA	NA	-17	NM_026383	52830	Mm.29159	NM_026383	ENSMUSG00000028675	Pnrc2	0610011E17Rik|D4Bwg0593e	proline-rich nuclear receptor coactivator 2	protein-coding	0.100000	0.676617	
mm_62496.1	chr7	101970099	101970299	+	1	NA	NA	NA	356	NM_133947	101706	Mm.27259	NM_133947	ENSMUSG00000066306	Numa1	6720401E04Rik|AA764025|AL022610|AU014979|NuMA	nuclear mitotic apparatus protein 1	protein-coding	0.110000	0.746269	
mm_413.1	chr1	34236457	34236657	+	1	NA	NA	NA	76227	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.090000	0.681592	
mm_94049.1	chr10	128179949	128180149	-	1	NA	NA	NA	248	NM_001039080	56516	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.005000	0.497512	
mm_103201.1	chr11	70652026	70652226	-	1	NA	NA	NA	2524	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.025000	0.502488	
mm_37605.1	chr4	126753255	126753455	-	1	NA	NA	NA	74	NM_011986	26562	Mm.206206	NM_011986	ENSMUSG00000028833	Ncdn	AU042419|MMS10-AE|Ms10ae|mKIAA0607|norbin	neurochondrin	protein-coding	0.090000	0.696517	
mm_161951.1	chr19	5609575	5609775	-	1	NA	NA	NA	32	NR_037603	81601	Mm.228930	NM_178637	ENSMUSG00000024926	Kat5	AI839539|CPLA2|Htatip|Htatip1|PLIP|Tip55|Tip60	K(lysine) acetyltransferase 5	protein-coding	0.050000	0.626866	
mm_87985.1	chr10	63986271	63986471	+	1	NA	NA	NA	103884	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.010000	0.457711	
mm_32679.1	chr4	115784807	115785007	+	1	NA	NA	NA	93	NM_181040	230649	Mm.109600	NM_181040	ENSMUSG00000028710	Atpaf1	6330547J17Rik|AI593252|ATP11|ATP11p	ATP synthase mitochondrial F1 complex assembly factor 1	protein-coding	0.125000	0.716418	
mm_40151.1	chr5	35388925	35389125	+	1	NA	NA	NA	-92	NM_010445	15371	Mm.358606	NM_010445	ENSMUSG00000067438	Hmx1	Nkx5-3	H6 homeobox 1	protein-coding	0.130000	0.756219	
mm_46246.1	chr5	99243183	99243383	-	1	NA	NA	NA	9644	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.020000	0.442786	
mm_164824.1	chr18	36606093	36606293	+	1	NA	NA	NA	45590	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.005000	0.517413	
mm_46483.1	chr5	105131881	105132081	-	1	NA	NA	NA	7571	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.412935	
mm_41065.1	chr5	87000761	87000961	+	1	NA	NA	NA	1	NM_172881	243085	Mm.312095	NM_172881	ENSMUSG00000035811	Ugt2b35	C730031G17	UDP glucuronosyltransferase 2 family, polypeptide B35	protein-coding	0.005000	0.442786	
mm_67509.1	chr7	80782813	80783013	-	1	NA	NA	NA	20418	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.010000	0.258706	
mm_18753.1	chr2	73434898	73435098	-	1	NA	NA	NA	18891	NM_001289722	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.040000	0.577114	
mm_59240.1	chr7	24780609	24780809	+	1	NA	NA	NA	3505	NM_007675	26366	Mm.30300	NM_007675	ENSMUSG00000054169	Ceacam10	Bgp3|Cea10	carcinoembryonic antigen-related cell adhesion molecule 10	protein-coding	0.010000	0.532338	
mm_67834.1	chr7	98361235	98361435	-	1	NA	NA	NA	-7	NM_001168539	244152	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.110000	0.711443	
mm_56660.1	chr6	113483078	113483278	-	1	NA	NA	NA	-391	NM_133930	171508	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811	cysteine-rich with EGF-like domains 1	protein-coding	0.050000	0.552239	-34(GGGCTTTAAAGG,-,0.00),-33(GGCTTTAAAGGG,-,0.00),-32(GCTTTAAAGGGC,+,0.00)
mm_85241.1	chr9	98955244	98955444	-	1	NA	NA	NA	-34	NR_003248	768252	Mm.129645	NR_003248	ENSMUSG00000097072	Foxl2os	ENSMUSG00000074122	forkhead box L2, opposite strand	ncRNA	0.100000	0.726368	
mm_171547.1	chr4	147022154	147022354	+	1	NA	NA	NA	404	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.005000	0.407960	
mm_8497.1	chr1	153851094	153851294	-	1	NA	NA	NA	1	NM_178243	240817	Mm.439405	NM_178243	ENSMUSG00000045968	Teddm2	5830403L16Rik|AJ554213|Me9|e92	transmembrane epididymal family member 2	protein-coding	0.010000	0.517413	
mm_158348.1	chrX	134476387	134476587	-	1	NA	NA	NA	3	NM_028958	74469	Mm.103259	NM_028958	ENSMUSG00000009596	Taf7l	4933438I11Rik|Taf2q	TATA-box binding protein associated factor 7 like	protein-coding	0.060000	0.592040	-62(CCTCTTATACCA,+,0.00)
mm_126436.1	chr15	80623248	80623448	+	1	NA	NA	NA	-135	NM_010815	17444	Mm.12947	NM_010815	ENSMUSG00000042351	Grap2	GRAP-2|GRB2L|GRBLG|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38	GRB2-related adaptor protein 2	protein-coding	0.010000	0.542289	-30(TCTTTTCTAGCC,+,0.00)
mm_127492.1	chr15	101373231	101373431	+	1	NA	NA	NA	-3206	NM_028770	74127	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0.015000	0.562189	
mm_60688.1	chr7	45155769	45155969	+	1	NA	NA	NA	-77	NM_001285904	68845	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	0.035000	0.522388	
mm_91782.1	chr10	52381831	52382031	-	1	NA	NA	NA	193	NM_053187	94221	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0.125000	0.761194	
mm_47641.1	chr5	125340978	125341178	-	1	NA	NA	NA	16	NM_016741	20778	Mm.282242	NM_016741	ENSMUSG00000037936	Scarb1	AI120173|CD36|Cd36l1|Chohd1|Cla-1|Cla1|D5Ertd460e|Hdlq1|Hlb398|SR-B1|SR-BI|SRBI|Srb1|mSR-BI	scavenger receptor class B, member 1	protein-coding	0.090000	0.721393	
mm_129265.1	chr15	76871327	76871527	-	1	NA	NA	NA	8	NM_001007568	71591	Mm.38195	NM_001007568	ENSMUSG00000022526	Zfp251	9130001M19Rik|AV339307	zinc finger protein 251	protein-coding	0.115000	0.701493	
mm_34040.1	chr4	138206251	138206451	+	1	NA	NA	NA	-10261	NM_001122896	15441	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	0.040000	0.407960	26(CTATTTATAGAA,+,0.00),61(CTTTTTAAACGA,+,0.00)
mm_136312.1	chr16	91688697	91688897	-	1	NA	NA	NA	-69	NM_021720	60364	Mm.328698	NM_021720	ENSMUSG00000022960	Donson	1110025J21Rik|AI845729|ORF60	downstream neighbor of SON	protein-coding	0.125000	0.776119	
mm_41427.1	chr5	90892560	90892760	+	1	NA	NA	NA	1415	NM_008176	14825	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.010000	0.308458	
mm_154233.1	chr19	60534160	60534360	-	1	NA	NA	NA	46763	NM_001172097	78832	Mm.259026	NM_030197	ENSMUSG00000033417	Cacul1	2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik	CDK2 associated, cullin domain 1	protein-coding	0.015000	0.343284	
mm_148167.1	chr18	77796120	77796320	-	1	NA	NA	NA	1670	NM_013831	19201	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.035000	0.507463	
mm_163368.1	chr12	36569812	36570012	+	1	NA	NA	NA	154296	NR_037309	100499526		NR_037309	ENSMUSG00000092917	Mir3472	mmu-mir-3472	microRNA 3472	ncRNA	0.010000	0.417910	
mm_68900.1	chr7	126450206	126450406	-	1	NA	NA	NA	12767	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.050000	0.582090	
mm_11179.1	chr2	28840334	28840534	+	1	NA	NA	NA	28	NM_001033294	227674	Mm.44179	NM_001033294	ENSMUSG00000026806	Ddx31	5830444G11Rik|Gm997	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31	protein-coding	0.080000	0.646766	
mm_3455.1	chr1	150103597	150103797	+	1	NA	NA	NA	3666	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.288557	31(CCTTTTCAAGGA,+,0.00)
mm_28688.1	chr3	95511763	95511963	-	1	NA	NA	NA	12653	NM_007802	13038	Mm.272085	NM_007802	ENSMUSG00000028111	Ctsk	AI323530|MMS10-Q|Ms10q|catK	cathepsin K	protein-coding	0.035000	0.457711	
mm_81173.1	chr9	107299999	107300199	+	1	NA	NA	NA	3440	NM_009895	12700	Mm.4592	NM_009895	ENSMUSG00000032578	Cish	CIS-1|CIS1|Cis|F17|F23|SOCS	cytokine inducible SH2-containing protein	protein-coding	0.020000	0.577114	
mm_80999.1	chr9	103425049	103425249	+	1	NA	NA	NA	1571	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.040000	0.472637	
mm_171811.1	chr5	133468570	133468770	+	1	NA	NA	NA	-631078	NM_030719	80909	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding	0.035000	0.517413	
mm_22819.1	chr3	27194597	27194797	+	1	NA	NA	NA	11693	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.000000	0.472637	
mm_33852.1	chr4	135862863	135863063	+	1	NA	NA	NA	6892	NM_010178	14105	Mm.10229	NM_010178	ENSMUSG00000028676	Srsf10	FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2	serine/arginine-rich splicing factor 10	protein-coding	0.010000	0.283582	-60(TCTTTTAGAGGA,+,0.00)
mm_5123.1	chr1	9299179	9299379	-	1	NA	NA	NA	598	NM_001290390	71096	Mm.336395	NM_027671	ENSMUSG00000025909	Sntg1	4933426D16Rik|G1SYN|SYN4	syntrophin, gamma 1	protein-coding	0.070000	0.651741	
mm_72146.1	chr8	72138547	72138747	+	1	NA	NA	NA	3355	NM_001001491	326618	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	0.020000	0.547264	
mm_162788.1	chr10	75351883	75352083	+	1	NA	NA	NA	-72	NR_033602	544707	Mm.349862	NR_033602		Gm5779	EG544707	ribosomal protein, large, P0 pseudogene	pseudo	0.025000	0.457711	31(GTCTTTAAACCC,+,0.00)
mm_60764.1	chr7	45549759	45549959	+	1	NA	NA	NA	-5069	NM_025330	66065	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.060000	0.621891	
mm_124105.1	chr14	79301532	79301732	-	1	NA	NA	NA	3	NM_025427	66214	Mm.29811	NM_025427	ENSMUSG00000022018	Rgcc	1190002H23Rik|Rgc-32|Rgc32	regulator of cell cycle	protein-coding	0.085000	0.706468	
mm_52423.1	chr6	113471428	113471628	+	1	NA	NA	NA	73	NM_134159	171095	Mm.213397	NM_134159	ENSMUSG00000030281	Il17rc	1110025H02Rik|Gm19850|IL-17RC|IL17-RC|IL17-RL|Il17rl	interleukin 17 receptor C	protein-coding	0.030000	0.646766	
mm_77972.1	chr9	7837044	7837244	+	1	NA	NA	NA	-87	NM_007465	11797	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.125000	0.681592	
mm_104465.1	chr11	95088769	95088969	-	1	NA	NA	NA	-12058	NM_001306162	16400	Mm.57035	NM_013565	ENSMUSG00000001507	Itga3	AA407068|CD49C|GAPB3	integrin alpha 3	protein-coding	0.040000	0.616915	
mm_39341.1	chr5	8893512	8893712	+	1	NA	NA	NA	-109	NM_008830	18670	Mm.297825	NM_008830	ENSMUSG00000042476	Abcb4	Mdr2|Pgy-2|Pgy2|mdr-2	ATP-binding cassette, sub-family B (MDR/TAP), member 4	protein-coding	0.075000	0.646766	-33(ACTTTTAGGGGC,+,0.00)
mm_17063.1	chr2	22590115	22590315	-	1	NA	NA	NA	-32112	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.005000	0.323383	25(TCTTTTATACTC,+,0.00)
mm_17826.1	chr2	33887470	33887670	-	1	NA	NA	NA	376	NM_175184	72543	Mm.254914	NM_175184	ENSMUSG00000038740	Mvb12b	2610200O14Rik|2610528K11Rik|AI414895|Fam125b	multivesicular body subunit 12B	protein-coding	0.165000	0.855721	
mm_66274.1	chr7	37479053	37479253	-	1	NA	NA	NA	290599	NM_172385	243937	Mm.322505	NM_172385	ENSMUSG00000043456	Zfp536	9630010P11Rik|Znf536|mKIAA0390	zinc finger protein 536	protein-coding	0.005000	0.283582	26(ATCTTTAAAAAG,-,0.00)
mm_126754.1	chr15	85787073	85787273	+	1	NA	NA	NA	24524	NM_001164626	72355	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	0.045000	0.577114	
mm_21323.1	chr2	157101072	157101272	-	1	NA	NA	NA	14117	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.005000	0.402985	
mm_104955.1	chr11	100141470	100141670	-	1	NA	NA	NA	2129	NM_001313963	16669	Mm.439699	NM_008471	ENSMUSG00000020911	Krt19	AI663979|CK-19|EndoC|K19|Krt-1.19|Krt1-19	keratin 19	protein-coding	0.035000	0.582090	
mm_162038.1	chr19	56379032	56379232	-	1	NA	NA	NA	10906	NM_198059	18175	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	0.025000	0.527363	
mm_116559.1	chr13	46727819	46728019	-	1	NA	NA	NA	-70	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.175000	0.766169	
mm_495.1	chr1	36903876	36904076	+	1	NA	NA	NA	35551	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.025000	0.527363	
mm_121204.1	chr14	103052448	103052648	+	1	NA	NA	NA	5536	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.020000	0.412935	
mm_82866.1	chr9	32344176	32344376	-	1	NA	NA	NA	-39	NM_010605	16521	Mm.69472	NM_010605	ENSMUSG00000032034	Kcnj5	GIRK4|Kir3.4	potassium inwardly-rectifying channel, subfamily J, member 5	protein-coding	0.055000	0.636816	
mm_52106.1	chr6	97880417	97880617	+	1	NA	NA	NA	-49300	NM_001178049	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.442786	
mm_165995.1	chr4	112232233	112232433	+	1	NA	NA	NA	88	NM_177578	195564	Mm.259652	NM_177578	ENSMUSG00000070868	Skint3	A430090E18Rik|Skint-3	selection and upkeep of intraepithelial T cells 3	protein-coding	0.010000	0.373134	
mm_77312.1	chr8	117673592	117673792	-	1	NA	NA	NA	-2177	NM_028725	74032	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	0.035000	0.537313	
mm_129814.1	chr15	82998906	82999106	-	1	NA	NA	NA	24132	NM_028728	74039	Mm.32584	NM_028728	ENSMUSG00000058099	Nfam1	4921501M20Rik|Cnaip	Nfat activating molecule with ITAM motif 1	protein-coding	0.020000	0.557214	
mm_249.1	chr1	19235229	19235429	+	1	NA	NA	NA	23275	NM_001025305	21419	Mm.137021	NM_009334	ENSMUSG00000025927	Tfap2b	AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b	transcription factor AP-2 beta	protein-coding	0.015000	0.373134	-82(TAGTTTAAAAAG,-,0.00),87(CAATCTATAAGG,-,0.00)
mm_34347.1	chr4	144523542	144523742	+	1	NA	NA	NA	3820	NM_198662	381572	Mm.184290	NM_198662	ENSMUSG00000028593	9430007A20Rik	Aadacl4|Gm1034	RIKEN cDNA 9430007A20 gene	protein-coding	0.005000	0.512438	
mm_117539.1	chr13	83601779	83601979	-	1	NA	NA	NA	28272	NM_001347569	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.015000	0.427861	
mm_142509.1	chr17	46153430	46153630	-	1	NA	NA	NA	21	NM_025649	66591	Mm.272024	NM_025649	ENSMUSG00000034509	Mad2l1bp	0610009D16Rik|2510031P20Rik|AU018945|AW550977|C76045|CMT2A|CMT2B|Mad2lbp|mKIAA0110	MAD2L1 binding protein	protein-coding	0.065000	0.592040	
mm_28041.1	chr3	83841494	83841694	-	1	NA	NA	NA	14	NM_011905	24088	Mm.87596	NM_011905	ENSMUSG00000027995	Tlr2	Ly105	toll-like receptor 2	protein-coding	0.065000	0.691542	
mm_13414.1	chr2	104113261	104113461	+	1	NA	NA	NA	-9408	NM_026634	68243	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0.010000	0.457711	
mm_64837.1	chr7	12997569	12997769	-	1	NA	NA	NA	523	NM_009512	26459	Mm.10984	NM_009512	ENSMUSG00000030382	Slc27a5	FACVL3|FATP5|VLCS-H2|VLCSH2|Vlacsr	solute carrier family 27 (fatty acid transporter), member 5	protein-coding	0.020000	0.552239	
mm_35376.1	chr4	33171912	33172112	-	1	NA	NA	NA	17725	NM_001034867	242377	Mm.372465	NM_001034867	ENSMUSG00000054659	Pm20d2	Acy1l2|Gm424	peptidase M20 domain containing 2	protein-coding	0.010000	0.368159	
mm_121907.1	chr14	21987772	21987972	-	1	NA	NA	NA	1729	NM_145459	218820	Mm.292401	NM_145459	ENSMUSG00000039081	Zfp503	AI181838|B830002A16Rik|Nolz-1|Nolz1|Znf503	zinc finger protein 503	protein-coding	0.090000	0.651741	
mm_147576.1	chr18	56430064	56430264	-	1	NA	NA	NA	-1968	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.020000	0.278607	
mm_18501.1	chr2	62610486	62610686	-	1	NA	NA	NA	35669	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.010000	0.417910	
mm_34796.1	chr4	154619070	154619270	+	1	NA	NA	NA	17197	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	0.040000	0.477612	
mm_149819.1	chr19	24197466	24197666	+	1	NA	NA	NA	-23426	NM_001198985	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.010000	0.547264	
mm_167735.1	chr9	106159952	106160152	+	1	NA	NA	NA	-1914	NM_174846	235582	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	0.055000	0.542289	
mm_143896.1	chr17	84682777	84682977	-	1	NA	NA	NA	134	NM_031884	27409	Mm.289590	NM_031884	ENSMUSG00000040505	Abcg5	cmp|sterolin-1|trac	ATP-binding cassette, sub-family G (WHITE), member 5	protein-coding	0.020000	0.582090	
mm_133569.1	chr16	91406083	91406283	+	1	NA	NA	NA	-52	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.055000	0.641791	
mm_116923.1	chr13	55536315	55536515	-	1	NA	NA	NA	243	NM_134059	72935	Mm.205045	NM_134059	ENSMUSG00000021494	Ddx41	2900024F02Rik|AA958953|ABS|AI324246	DEAD (Asp-Glu-Ala-Asp) box polypeptide 41	protein-coding	0.130000	0.696517	
mm_56655.1	chr6	113434664	113434864	-	1	NA	NA	NA	991	NM_178373	14311	Mm.10026	NM_178373	ENSMUSG00000030278	Cidec	CIDE-3|Fsp27	cell death-inducing DFFA-like effector c	protein-coding	0.030000	0.606965	
mm_23083.1	chr3	36861927	36862127	+	1	NA	NA	NA	-1079	NM_172679	229227	Mm.207907	NM_172679	ENSMUSG00000037270	4932438A13Rik	4732443H21|B830039D19Rik|D630029K19Rik|FSA|Kiaa1109|Tweek	RIKEN cDNA 4932438A13 gene	protein-coding	0.005000	0.447761	
mm_44110.1	chr5	149374309	149374509	+	1	NA	NA	NA	-37397	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.020000	0.522388	
mm_14921.1	chr2	151127383	151127583	+	1	NA	NA	NA	29238	NM_001097977	433486	Mm.422661	NM_001097977	ENSMUSG00000079006	Gm14151	OTTMUSG00000015806	predicted gene 14151	protein-coding	0.035000	0.477612	
mm_33122.1	chr4	124798755	124798955	+	1	NA	NA	NA	-3694	NM_008636	17764	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	0.005000	0.407960	
mm_1961.1	chr1	86434530	86434730	+	1	NA	NA	NA	8301	NM_027966	71863	Mm.179627	NM_027966	ENSMUSG00000036574	1700019O17Rik	-	RIKEN cDNA 1700019O17 gene	protein-coding	0.085000	0.646766	
mm_60411.1	chr7	44476023	44476223	+	1	NA	NA	NA	5776	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.492537	
mm_17518.1	chr2	29251961	29252161	-	1	NA	NA	NA	932	NR_029460	76220	Mm.330108	NR_029460	ENSMUSG00000079499	6530402F18Rik	mKIAA1857	RIKEN cDNA 6530402F18 gene	ncRNA	0.045000	0.562189	11(GGCTCTAAAGGC,-,0.00)
mm_54552.1	chr6	37016895	37017095	-	1	NA	NA	NA	-205634	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.010000	0.358209	
mm_156837.1	chrX	164373378	164373578	+	1	NA	NA	NA	-44	NM_001308489	14205	Mm.297978	NM_010216	ENSMUSG00000031380	Vegfd	AI325264|Figf|VEGF-D	vascular endothelial growth factor D	protein-coding	0.005000	0.383085	-34(CTCCTTATAAAG,-,0.00),-32(CCTTATAAAGCA,+,0.00)
mm_13818.1	chr2	119237364	119237564	+	1	NA	NA	NA	104	NM_016907	20732	Mm.104955	NM_016907	ENSMUSG00000027315	Spint1	HAI-1	serine protease inhibitor, Kunitz type 1	protein-coding	0.110000	0.691542	
mm_117239.1	chr13	64312541	64312741	-	1	NA	NA	NA	69	NM_025370	66129	Mm.491110	NM_025370	ENSMUSG00000021482	Aaed1	1110018J18Rik|AI849003	AhpC/TSA antioxidant enzyme domain containing 1	protein-coding	0.155000	0.771144	
mm_133226.1	chr16	76403323	76403523	+	1	NA	NA	NA	-30374	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.040000	0.601990	
mm_52692.1	chr6	118198304	118198504	+	1	NA	NA	NA	-660	NM_001080780	19713	Mm.57199	NM_009050	ENSMUSG00000030110	Ret	PTC|RET51|RET9|c-Ret	ret proto-oncogene	protein-coding	0.010000	0.517413	
mm_73170.1	chr8	95020735	95020935	+	1	NA	NA	NA	3143	NM_173036	54672	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.020000	0.651741	
mm_58045.1	chr6	136827723	136827923	-	1	NA	NA	NA	393	NM_021714	60321	Mm.141197	NM_021714	ENSMUSG00000030216	Wbp11	2510026P17Rik|D6Wsu113e|Npwbp|SIPP1	WW domain binding protein 11	protein-coding	0.135000	0.726368	
mm_85669.1	chr9	107676308	107676508	-	1	NA	NA	NA	3184	NM_008140	14685	Mm.284853	NM_008140	ENSMUSG00000034837	Gnat1	Gnat-1|Ird1|Ird2|Tralpha|irdc|irdr|transducin	guanine nucleotide binding protein, alpha transducing 1	protein-coding	0.050000	0.666667	
mm_155179.1	chrX	53724705	53724905	+	1	NA	NA	NA	-26	NM_029142	75013	Mm.336332	NM_029142	ENSMUSG00000055555	4930502E18Rik	Ct55	RIKEN cDNA 4930502E18 gene	protein-coding	0.025000	0.532338	
mm_2423.1	chr1	95314014	95314214	+	1	NA	NA	NA	486	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.075000	0.696517	
mm_172643.1	chr8	26054103	26054303	+	1	NA	NA	NA	-28406	NR_110583	76604	Mm.437190	NR_110583	ENSMUSG00000085437	1700047A11Rik	4930554C15Rik	RIKEN cDNA 1700047A11 gene	ncRNA	0.025000	0.477612	-21(CTTTAAATACCC,+,0.00)
mm_123954.1	chr14	74733383	74733583	-	1	NA	NA	NA	1186	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.005000	0.477612	
mm_58622.1	chr7	5069067	5069267	+	1	NA	NA	NA	7024	NM_001205231	22185	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.000000	0.407960	
mm_61915.1	chr7	90146967	90147167	+	1	NA	NA	NA	16835	NM_001252520	233489	Mm.235175	NM_146194	ENSMUSG00000039361	Picalm	CALM|CLTH|PAP180|fit-1|fit1|mKIAA4114	phosphatidylinositol binding clathrin assembly protein	protein-coding	0.000000	0.427861	
mm_2237.1	chr1	91049594	91049794	+	1	NA	NA	NA	-3750	NM_001310732	16978	Mm.45039	NM_008515	ENSMUSG00000026305	Lrrfip1	AU024550|Fliiap1	leucine rich repeat (in FLII) interacting protein 1	protein-coding	0.010000	0.447761	
mm_102550.1	chr11	61364948	61365148	-	1	NA	NA	NA	13027	NM_026183	67473	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	0.015000	0.447761	
mm_52759.1	chr6	120793966	120794166	+	1	NA	NA	NA	20298	NM_001081048	71803	Mm.425340	NM_001081048	ENSMUSG00000004902	Slc25a18	1500015I14Rik|AW125787	solute carrier family 25 (mitochondrial carrier), member 18	protein-coding	0.020000	0.522388	
mm_87262.1	chr10	41519885	41520085	+	1	NA	NA	NA	485	NM_016898	53599	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.075000	0.597015	
mm_144979.1	chr18	37955560	37955760	+	1	NA	NA	NA	101	NM_153793	225392	Mm.233516	NM_153793	ENSMUSG00000044024	Rell2	4631403P03Rik|ependolin	RELT-like 2	protein-coding	0.100000	0.686567	
mm_57627.1	chr6	128300293	128300493	-	1	NA	NA	NA	420	NM_001080979	21679	Mm.14774	NM_011567	ENSMUSG00000030353	Tead4	ETFR-2|Etfr2|FR-19|Rtef1|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a	TEA domain family member 4	protein-coding	0.125000	0.741294	
mm_163297.1	chr11	120041639	120041839	-	1	NA	NA	NA	42	NM_001198787	11302	Mm.6826	NM_007377	ENSMUSG00000025375	Aatk	AATYK|aatyk1|mKIAA0641	apoptosis-associated tyrosine kinase	protein-coding	0.015000	0.597015	
mm_31575.1	chr4	57645395	57645595	+	1	NA	NA	NA	77247	NM_172868	242481	Mm.331630	NM_172868	ENSMUSG00000090053	Palm2	53-H12|B130066I24|R75368|pEN70	paralemmin 2	protein-coding	0.010000	0.353234	
mm_17669.1	chr2	32087360	32087560	-	1	NA	NA	NA	-3755	NM_175511	241303	Mm.250441	NM_175511	ENSMUSG00000050592	Fam78a	A130092J06Rik	family with sequence similarity 78, member A	protein-coding	0.005000	0.482587	
mm_76374.1	chr8	84815529	84815729	-	1	NA	NA	NA	7194	NM_201227	23863	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	0.020000	0.547264	
mm_32733.1	chr4	116593366	116593566	+	1	NA	NA	NA	-3264	NM_001037916	622665	Mm.388905	NM_001037916	ENSMUSG00000034035	Ccdc17	-	coiled-coil domain containing 17	protein-coding	0.000000	0.273632	
mm_83363.1	chr9	44417905	44418105	-	1	NA	NA	NA	2	NM_201372	382073	Mm.259573	NM_201372	ENSMUSG00000043923	Ccdc84	D630044F24Rik|Gm1114	coiled-coil domain containing 84	protein-coding	0.090000	0.671642	
mm_58239.1	chr6	145047548	145047748	-	1	NA	NA	NA	1164	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.050000	0.522388	-36(CTTTATAAATGG,-,0.00)
mm_23125.1	chr3	37654391	37654591	+	1	NA	NA	NA	14544	NM_001305442	24063	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty homolog 1 (Drosophila)	protein-coding	0.030000	0.552239	
mm_127656.1	chr15	102498584	102498784	+	1	NA	NA	NA	18320	NM_001163643	26404	Mm.172897	NM_009582	ENSMUSG00000023050	Map3k12	DLK|MUK|Zpk	mitogen-activated protein kinase kinase kinase 12	protein-coding	0.010000	0.318408	
mm_104062.1	chr11	86584591	86584791	-	1	NA	NA	NA	-533	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.025000	0.368159	-34(AACTTTATAAAG,-,0.00),-32(CTTTATAAAGAC,+,0.00)
mm_76400.1	chr8	84844834	84845034	-	1	NA	NA	NA	1997	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.015000	0.487562	
mm_61573.1	chr7	79770421	79770621	+	1	NA	NA	NA	23069	NM_008588	17292	Mm.1404	NM_008588	ENSMUSG00000030544	Mesp1	bHLHc5	mesoderm posterior 1	protein-coding	0.000000	0.422886	-15(CCTTAAATATCC,+,0.00),12(GAGTCTAAAGGC,-,0.00),27(GCCTTAAAACCC,+,0.00)
mm_16401.1	chr2	179977343	179977543	+	1	NA	NA	NA	590	NR_033782	66730	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	0.035000	0.422886	
mm_53106.1	chr6	125071199	125071399	+	1	NA	NA	NA	22	NM_001163268	381810	Mm.333386	NM_001163268	ENSMUSG00000067714	Lpar5	GPR93|Gm1072|Gpr92|LPA5	lysophosphatidic acid receptor 5	protein-coding	0.020000	0.577114	
mm_289.1	chr1	21368146	21368346	+	1	NA	NA	NA	-85	NM_001033904	433278	Mm.26006	NM_001033904	ENSMUSG00000041722	Khdc1c	Khdc1b	KH domain containing 1C	protein-coding	0.000000	0.517413	
mm_5049.1	chr1	194749391	194749591	+	1	NA	NA	NA	129662	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	0.015000	0.507463	-11(TCTTTTATACCT,+,0.00)
mm_6273.1	chr1	69667675	69667875	-	1	NA	NA	NA	18185	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.010000	0.388060	9(GTCTCTAAAAGT,-,0.00)
mm_116575.1	chr13	47105276	47105476	-	1	NA	NA	NA	845	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.055000	0.432836	
mm_7775.1	chr1	131273381	131273581	-	1	NA	NA	NA	6082	NM_019777	56489	Mm.386783	NM_019777	ENSMUSG00000042349	Ikbke	AW558201|IKK-i|IKKepsilon|Ikki	inhibitor of kappaB kinase epsilon	protein-coding	0.035000	0.587065	
mm_4128.1	chr1	170308715	170308915	+	1	NA	NA	NA	-46	NM_001039593	76925	Mm.33631	NM_001039593	ENSMUSG00000042800	1700015E13Rik	-	RIKEN cDNA 1700015E13 gene	protein-coding	0.020000	0.492537	
mm_136432.1	chr16	94370571	94370771	-	1	NA	NA	NA	39	NM_001159616	56176	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0.110000	0.671642	
mm_16047.1	chr2	167744200	167744400	+	1	NA	NA	NA	53123	NR_015500	329562	Mm.123101	NM_177851	ENSMUSG00000006462	A530013C23Rik	-	RIKEN cDNA A530013C23 gene	ncRNA	0.000000	0.577114	
mm_167547.1	chr9	29771404	29771604	+	1	NA	NA	NA	191625	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.030000	0.507463	
mm_112071.1	chr12	112511069	112511269	-	1	NA	NA	NA	-9	NM_178915	104885	Mm.37751	NM_178915	ENSMUSG00000054013	Tmem179	AI839735	transmembrane protein 179	protein-coding	0.185000	0.766169	
mm_29501.1	chr3	116007305	116007505	-	1	NA	NA	NA	1	NM_023214	66500	Mm.34550	NM_023214	ENSMUSG00000054414	Slc30a7	1810059J10Rik|2610034N15Rik|4833428C12Rik|AI467242|ZnT-7|ZnT7|Zntl2	solute carrier family 30 (zinc transporter), member 7	protein-coding	0.120000	0.716418	
mm_42759.1	chr5	121191404	121191604	+	1	NA	NA	NA	-107	NM_011202	19247	Mm.8681	NM_011202	ENSMUSG00000043733	Ptpn11	2700084A17Rik|AW536184|PTP1D|PTP2C|SAP-2|SH-PTP2|SH-PTP3|SHP-2|Shp2|Syp	protein tyrosine phosphatase, non-receptor type 11	protein-coding	0.130000	0.696517	
mm_101202.1	chr11	19018828	19019028	-	1	NA	NA	NA	41	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.055000	0.522388	49(CCTTTAAGACAA,+,0.00)
mm_38918.1	chr4	150001255	150001455	-	1	NA	NA	NA	1881	NM_001291004	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.025000	0.552239	
mm_129367.1	chr15	77991894	77992094	-	1	NA	NA	NA	-21170	NM_018749	55944	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	0.005000	0.472637	
mm_33764.1	chr4	134397216	134397416	+	1	NA	NA	NA	-155	NM_001285872	100163	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	0.010000	0.547264	
mm_47541.1	chr5	124249820	124250020	-	1	NA	NA	NA	-160	NM_011256	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.160000	0.776119	
mm_43892.1	chr5	144100268	144100468	+	1	NA	NA	NA	-68	NM_001081109	231876	Mm.288726	NM_001081109	ENSMUSG00000038970	Lmtk2	2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk	lemur tyrosine kinase 2	protein-coding	0.105000	0.711443	
mm_52171.1	chr6	99095678	99095878	+	1	NA	NA	NA	-67480	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.030000	0.537313	
mm_40363.1	chr5	48372251	48372451	+	1	NA	NA	NA	-41	NM_025755	66768	Mm.29409	NM_025755	ENSMUSG00000029089	Pacrgl	4933428G09Rik	PARK2 co-regulated-like	protein-coding	0.070000	0.582090	
mm_4237.1	chr1	171383417	171383617	+	1	NA	NA	NA	-5443	NM_001005508	226652	Mm.251048	NM_001005508	ENSMUSG00000048865	Arhgap30	6030405P05Rik|Gm102|mFLJ00267	Rho GTPase activating protein 30	protein-coding	0.010000	0.557214	
mm_8568.1	chr1	155417315	155417515	-	1	NA	NA	NA	29	NM_011273	19775	Mm.266215	NM_011273	ENSMUSG00000026469	Xpr1	Rmc-1|Rmc1|Sxv|Syg1|XR	xenotropic and polytropic retrovirus receptor 1	protein-coding	0.115000	0.726368	
mm_34576.1	chr4	150087558	150087758	+	1	NA	NA	NA	155	NM_177366	269604	Mm.219307	NM_177366	ENSMUSG00000047875	Gpr157	F730108M23Rik	G protein-coupled receptor 157	protein-coding	0.090000	0.706468	
mm_13156.1	chr2	92541050	92541250	+	1	NA	NA	NA	-51056	NR_106080	102466819		NR_106080	ENSMUSG00000099223	Mir7221	Gm27378|mmu-mir-7221	microRNA 7221	ncRNA	0.020000	0.532338	
mm_72857.1	chr8	88428684	88428884	+	1	NA	NA	NA	-66593	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.020000	0.522388	
mm_61849.1	chr7	88297091	88297291	+	1	NA	NA	NA	19106	NM_001311790	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.010000	0.492537	
mm_82833.1	chr9	31150027	31150227	-	1	NA	NA	NA	-18328	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.010000	0.497512	
mm_12230.1	chr2	68565567	68565767	+	1	NA	NA	NA	-16746	NM_177651	227998	Mm.67562	NM_177651	ENSMUSG00000053896	4933409G03Rik	-	RIKEN cDNA 4933409G03 gene	protein-coding	0.005000	0.522388	
mm_99969.1	chr11	113687041	113687241	+	1	NA	NA	NA	2729	NM_177777	276852	Mm.239566	NM_177777	ENSMUSG00000041623	D11Wsu47e	-	DNA segment, Chr 11, Wayne State University 47, expressed	protein-coding	0.005000	0.497512	
mm_110106.1	chr12	26415135	26415335	-	1	NA	NA	NA	27	NM_001081977	108089	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	0.155000	0.766169	-6(AGGCATAAAGGG,-,0.00)
mm_71449.1	chr8	46521503	46521703	+	1	NA	NA	NA	-30466	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.015000	0.442786	
mm_24797.1	chr3	95547141	95547341	+	1	NA	NA	NA	-12436	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.000000	0.422886	
mm_23990.1	chr3	86263355	86263555	+	1	NA	NA	NA	38765	NM_001077687	80877	Mm.439825	NM_030695	ENSMUSG00000028080	Lrba	C80285|D3Ertd775e|Lab300|Lba	LPS-responsive beige-like anchor	protein-coding	0.015000	0.427861	
mm_44533.1	chr5	24451624	24451824	-	1	NA	NA	NA	-453	NM_001256431	213990	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.105000	0.691542	
mm_143960.1	chr17	87025278	87025478	-	1	NA	NA	NA	23	NM_008838	18701	Mm.219685	NM_008838	ENSMUSG00000024145	Pigf	-	phosphatidylinositol glycan anchor biosynthesis, class F	protein-coding	0.075000	0.676617	
mm_47227.1	chr5	121374598	121374798	-	1	NA	NA	NA	10917	NM_001163470	231712	Mm.20488	NM_172275	ENSMUSG00000042726	Trafd1	1110008K06Rik|Fln29	TRAF type zinc finger domain containing 1	protein-coding	0.020000	0.522388	
mm_100819.1	chr11	5177128	5177328	-	1	NA	NA	NA	-25006	NM_080595	140703	Mm.840	NM_080595	ENSMUSG00000034164	Emid1	AW122071|CO-5|Emu1	EMI domain containing 1	protein-coding	0.015000	0.482587	
mm_157698.1	chrX	60446608	60446808	-	1	NA	NA	NA	9487	NM_001039240	631784	Mm.424878	NM_001039240	ENSMUSG00000079583	Gm7073	-	predicted gene 7073	protein-coding	0.005000	0.417910	
mm_130141.1	chr15	90898417	90898617	-	1	NA	NA	NA	-41	NR_033583	20738	Mm.431547	NR_033583		Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.020000	0.577114	
mm_33676.1	chr4	133226445	133226645	+	1	NA	NA	NA	5736	NM_027152	69655	Mm.285685	NM_027152	ENSMUSG00000028865	Cd164l2	2310047N01Rik	CD164 sialomucin-like 2	protein-coding	0.030000	0.592040	
mm_38912.1	chr4	149996272	149996472	-	1	NA	NA	NA	6864	NM_001291004	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.010000	0.507463	
mm_49087.1	chr6	6867774	6867974	+	1	NA	NA	NA	1659	NR_015388	320038	Mm.94021	NR_015388		Dlx6os1	A230055N17Rik|Dlx6as1|Evf-1|Evf-2|Evf1|Evf1/2|Evf2|Shhrs|mEvf-1	distal-less homeobox 6, opposite strand 1	ncRNA	0.010000	0.358209	
mm_6647.1	chr1	79671880	79672080	-	1	NA	NA	NA	-8	NM_183027	252903	Mm.32409	NM_183027	ENSMUSG00000054702	Ap1s3	1190009B22|Jr2|[s]3A	adaptor-related protein complex AP-1, sigma 3	protein-coding	0.040000	0.616915	
mm_19539.1	chr2	94730601	94730801	-	1	NA	NA	NA	-292515	NM_001305258	11800	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0.015000	0.497512	
mm_67765.1	chr7	92875013	92875213	-	1	NA	NA	NA	-140	NM_028243	72461	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.040000	0.572139	3(CCTTTACTACGC,+,0.00)
mm_119320.1	chr14	37054761	37054961	+	1	NA	NA	NA	31	NM_146245	239037	Mm.37907	NM_146245	ENSMUSG00000041044	Lrit1	BC032270|Lrrc21	leucine-rich repeat, immunoglobulin-like and transmembrane domains 1	protein-coding	0.010000	0.621891	
mm_56598.1	chr6	108664895	108665095	-	1	NA	NA	NA	-4061	NR_104577	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.045000	0.557214	
mm_107842.1	chr12	69297323	69297523	+	1	NA	NA	NA	742	NM_027117	69554	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0.060000	0.557214	
mm_62051.1	chr7	92447183	92447383	+	1	NA	NA	NA	-113866	NM_025515	66365	Mm.21173	NM_025515	ENSMUSG00000030613	Ccdc90b	2310015N07Rik|C86558	coiled-coil domain containing 90B	protein-coding	0.025000	0.542289	
mm_70185.1	chr7	143775430	143775630	-	1	NA	NA	NA	-8537	NM_203492	381974	Mm.297839	NM_203492	ENSMUSG00000050276	Mrgprg	Gm1098|Mrgg	MAS-related GPR, member G	protein-coding	0.005000	0.482587	
mm_147970.1	chr18	67245545	67245745	-	1	NA	NA	NA	185	NM_172630	225651	Mm.235792	NM_172630	ENSMUSG00000062526	Mppe1	A530095G11	metallophosphoesterase 1	protein-coding	0.120000	0.686567	
mm_23901.1	chr3	83031729	83031929	+	1	NA	NA	NA	5676	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.020000	0.447761	
mm_116838.1	chr13	54688022	54688222	-	1	NA	NA	NA	78	NM_001146027	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.085000	0.611940	
mm_101384.1	chr11	23846423	23846623	-	1	NA	NA	NA	48747	NM_172555	216578	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0.005000	0.522388	
mm_24280.1	chr3	89226085	89226285	+	1	NA	NA	NA	1013	NR_030579	100124470		NR_030579	ENSMUSG00000076255	Mir92b	Mirn92b|mir-92b|mmu-mir-92b	microRNA 92b	ncRNA	0.005000	0.587065	
mm_113526.1	chr13	37826138	37826338	+	1	NA	NA	NA	200	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.050000	0.587065	
mm_134201.1	chr16	11134405	11134605	-	1	NA	NA	NA	27	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.135000	0.746269	
mm_32162.1	chr4	99983898	99984098	+	1	NA	NA	NA	54547	NM_028132	72157	Mm.217764	NM_028132	ENSMUSG00000025791	Pgm2	2610020G18Rik|AA407108|AI098105|Pgm-2|Pgm1	phosphoglucomutase 2	protein-coding	0.035000	0.537313	
mm_143246.1	chr17	64311214	64311414	-	1	NA	NA	NA	20569	NM_144859	224938	Mm.489681	NM_144859	ENSMUSG00000024083	Pja2	AI447901|AL022700|Neurodap1|mKIAA0438	praja 2, RING-H2 motif containing	protein-coding	0.010000	0.437811	
mm_23423.1	chr3	58692413	58692613	+	1	NA	NA	NA	-76	NR_045167	71301	Mm.254475	NR_045167	ENSMUSG00000097725	4930593A02Rik	4933440I01Rik	RIKEN cDNA 4930593A02 gene	ncRNA	0.145000	0.761194	
mm_92136.1	chr10	66698059	66698259	-	1	NA	NA	NA	222225	NR_138560	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.045000	0.567164	
mm_166158.1	chr5	15934577	15934777	+	1	NA	NA	NA	-14	NM_001110843	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.155000	0.810945	
mm_7372.1	chr1	106759609	106759809	-	1	NA	NA	NA	33	NM_027534	70750	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	0.095000	0.686567	
mm_128014.1	chr15	19365906	19366106	-	1	NA	NA	NA	545677	NM_009865	320873	Mm.117794	NM_009865	ENSMUSG00000022321	Cdh10	A830016G23Rik|C030003B10Rik|C030011H18Rik	cadherin 10	protein-coding	0.035000	0.462687	-34(TGCTTTATAAAG,-,0.00),-32(CTTTATAAAGAA,+,0.00)
mm_103172.1	chr11	70459658	70459858	-	1	NA	NA	NA	136	NM_001029929	574428	Mm.472771	NM_001029929	ENSMUSG00000040829	Zmynd15	-	zinc finger, MYND-type containing 15	protein-coding	0.070000	0.597015	
mm_119380.1	chr14	41134310	41134510	+	1	NA	NA	NA	2622	NM_023134	20387	Mm.46062	NM_023134	ENSMUSG00000021789	Sftpa1	SP-A|Sftp-1|Sftp1	surfactant associated protein A1	protein-coding	0.010000	0.437811	
mm_137688.1	chr17	28872506	28872706	+	1	NA	NA	NA	14195	NM_001034885	433091	Mm.328925	NM_001034885	ENSMUSG00000043286	Pnpla1	-	patatin-like phospholipase domain containing 1	protein-coding	0.020000	0.512438	
mm_16657.1	chr2	6592716	6592916	-	1	NA	NA	NA	128846	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.000000	0.398010	
mm_62573.1	chr7	104291740	104291940	+	1	NA	NA	NA	-3734	NM_001310602	667823	Mm.482375	NM_001310602	ENSMUSG00000060441	Trim5	EG667823|Gm8833	tripartite motif-containing 5	protein-coding	0.005000	0.432836	
mm_56126.1	chr6	87533142	87533342	-	1	NA	NA	NA	17	NM_001037727	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.015000	0.467662	
mm_29880.1	chr3	131111671	131111871	-	1	NA	NA	NA	-1020	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.070000	0.651741	
mm_130664.1	chr15	100669404	100669604	-	1	NA	NA	NA	-4	NM_001270537	668218	Mm.451225	NM_001270537	ENSMUSG00000098112	Bin2	-	bridging integrator 2	protein-coding	0.050000	0.661692	
mm_118550.1	chr14	17659713	17659913	+	1	NA	NA	NA	-1147	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.035000	0.502488	
mm_113728.1	chr13	43948739	43948939	+	1	NA	NA	NA	163727	NM_001289915	12522	Mm.57175	NM_009856	ENSMUSG00000015396	Cd83	-	CD83 antigen	protein-coding	0.010000	0.467662	1(CCTTTTCTAGGT,+,0.00)
mm_162042.1	chr19	59038185	59038385	-	1	NA	NA	NA	37784	NM_175172	71653	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Kiaa1598|Shootin1|mKIAA1598	shootin 1	protein-coding	0.020000	0.467662	
mm_5238.1	chr1	16093214	16093414	-	1	NA	NA	NA	11	NM_001305227	75799	Mm.78557	NM_001243238	ENSMUSG00000067795	4930444P10Rik	-	RIKEN cDNA 4930444P10 gene	protein-coding	0.100000	0.726368	
mm_96933.1	chr11	70519530	70519730	+	1	NA	NA	NA	421	NM_146020	216871	Mm.22551	NM_146020	ENSMUSG00000046811	Gltpd2	C730027E14Rik	glycolipid transfer protein domain containing 2	protein-coding	0.010000	0.527363	
mm_62829.1	chr7	113514067	113514267	+	1	NA	NA	NA	333	NM_027379	67420	Mm.206919	NM_026143	ENSMUSG00000030759	Far1	2600011M19Rik|2900034E22Rik|3732409C05Rik|AI850429|Mlstd2	fatty acyl CoA reductase 1	protein-coding	0.110000	0.781095	
mm_153793.1	chr19	45998364	45998564	-	1	NA	NA	NA	24	NM_198296	71617	Mm.210949	NM_198296	ENSMUSG00000039901	9130011E15Rik	AI431055|AW050122	RIKEN cDNA 9130011E15 gene	protein-coding	0.130000	0.721393	
mm_29890.1	chr3	131271941	131272141	-	1	NA	NA	NA	60	NM_008212	15107	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.105000	0.696517	
mm_118004.1	chr13	100553089	100553289	-	1	NA	NA	NA	-691	NM_008756	18260	Mm.4807	NM_008756	ENSMUSG00000021638	Ocln	AI503564|Ocl	occludin	protein-coding	0.040000	0.482587	
mm_1583.1	chr1	74293870	74294070	+	1	NA	NA	NA	8936	NM_001039509	56695	Mm.384726	NM_019999	ENSMUSG00000026179	Pnkd	2210013N15Rik|2810403H05Rik|AI854243|Brp17|MNCb-5687|MR-1|Tahccp2	paroxysmal nonkinesiogenic dyskinesia	protein-coding	0.015000	0.502488	
mm_105040.1	chr11	100584663	100584863	-	1	NA	NA	NA	8872	NM_001146318	12799	Mm.15711	NM_009923	ENSMUSG00000006782	Cnp	CNPase|Cnp-1|Cnp1	2',3'-cyclic nucleotide 3' phosphodiesterase	protein-coding	0.000000	0.507463	
mm_10515.1	chr2	16356548	16356748	+	1	NA	NA	NA	344	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.050000	0.572139	
mm_77497.1	chr8	122596084	122596284	-	1	NA	NA	NA	15303	NM_001193645	50917	Mm.1786	NM_016722	ENSMUSG00000015027	Galns	mFLJ00319	galactosamine (N-acetyl)-6-sulfate sulfatase	protein-coding	0.010000	0.502488	
mm_2773.1	chr1	130731998	130732198	+	1	NA	NA	NA	122	NM_177604	212439	Mm.268547	NM_177604	ENSMUSG00000042510	AA986860	E030025M07|Sarg	expressed sequence AA986860	protein-coding	0.025000	0.527363	
mm_38393.1	chr4	138819190	138819390	-	1	NA	NA	NA	-33	NM_011110	18784	Mm.486532	NM_011110	ENSMUSG00000041193	Pla2g5	PLA2|sPLA2	phospholipase A2, group V	protein-coding	0.015000	0.606965	
mm_169447.1	chr14	58252943	58253143	-	1	NA	NA	NA	180357	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.040000	0.542289	
mm_103810.1	chr11	83002128	83002328	-	1	NA	NA	NA	-10398	NM_172796	237886	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.010000	0.412935	
mm_91204.1	chr10	21161278	21161478	-	1	NA	NA	NA	-394	NM_010848	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.060000	0.577114	
mm_42966.1	chr5	123135744	123135944	+	1	NA	NA	NA	-3215	NM_175092	23912	Mm.253876	NM_175092	ENSMUSG00000029449	Rhof	AI845056|AV026554|Arhf|Ifld1|Rif	ras homolog family member F (in filopodia)	protein-coding	0.020000	0.557214	
mm_122936.1	chr14	54963053	54963253	-	1	NA	NA	NA	3454	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.035000	0.562189	
mm_144188.1	chr18	7869084	7869284	+	1	NA	NA	NA	-13	NM_001146298	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.125000	0.711443	
mm_66347.1	chr7	43505835	43506035	-	1	NA	NA	NA	3	NM_028737	74054	Mm.195732	NM_028737	ENSMUSG00000013353	4931406B18Rik	4930538L19Rik	RIKEN cDNA 4931406B18 gene	protein-coding	0.030000	0.542289	
mm_126767.1	chr15	86004218	86004418	+	1	NA	NA	NA	29459	NM_009886	12614	Mm.22680	NM_009886	ENSMUSG00000016028	Celsr1	Adgrc1|Crsh|Scy|crash	cadherin, EGF LAG seven-pass G-type receptor 1	protein-coding	0.010000	0.512438	
mm_98360.1	chr11	93886132	93886332	+	1	NA	NA	NA	13	NM_134012	103537	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	0.075000	0.701493	
mm_139079.1	chr17	46680896	46681096	+	1	NA	NA	NA	10	NM_001277309	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.090000	0.666667	
mm_24108.1	chr3	88142441	88142641	+	1	NA	NA	NA	169	NM_001310593	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.170000	0.751244	
mm_142877.1	chr17	51825128	51825328	-	1	NA	NA	NA	1360	NM_001163631	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.010000	0.368159	
mm_76394.1	chr8	84844315	84844515	-	1	NA	NA	NA	2516	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.005000	0.512438	
mm_133539.1	chr16	91063913	91064113	+	1	NA	NA	NA	5132	NM_001163695	74387	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.030000	0.467662	
mm_124332.1	chr14	103843613	103843813	-	1	NA	NA	NA	-12	NM_001276296	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.065000	0.611940	
mm_18913.1	chr2	76736109	76736309	-	1	NA	NA	NA	60894	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.040000	0.497512	
mm_144032.1	chr17	90037193	90037393	-	1	NA	NA	NA	51075	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.040000	0.577114	
mm_14991.1	chr2	152293746	152293946	+	1	NA	NA	NA	-26	NM_024196	67231	Mm.288733	NM_024196	ENSMUSG00000027465	Tbc1d20	1110028I04Rik|2810442O16Rik|AI414693|bs	TBC1 domain family, member 20	protein-coding	0.125000	0.731343	
mm_16253.1	chr2	173159103	173159303	+	1	NA	NA	NA	6130	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.010000	0.308458	51(ACTTTTATAGAA,+,0.00)
mm_106212.1	chr11	116852075	116852275	-	1	NA	NA	NA	919	NM_011358	20382	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0.105000	0.636816	
mm_60739.1	chr7	45444366	45444566	+	1	NA	NA	NA	9627	NM_030678	14936	Mm.275654	NM_030678	ENSMUSG00000003865	Gys1	Gys3|MGS	glycogen synthase 1, muscle	protein-coding	0.020000	0.532338	
mm_119803.1	chr14	54218880	54219080	+	1	NA	NA	NA	34949	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.035000	0.497512	
mm_158747.1	chrX	164960995	164961195	-	1	NA	NA	NA	19280	NM_001290523	76763	Mm.291758	NM_029730	ENSMUSG00000061778	Mospd2	2410013I23Rik	motile sperm domain containing 2	protein-coding	0.025000	0.358209	
mm_73226.1	chr8	103603679	103603879	+	1	NA	NA	NA	-20	NR_045730	71058	Mm.67707	NR_045730	ENSMUSG00000110336	4933400L20Rik	-	RIKEN cDNA 4933400L20 gene	ncRNA	0.005000	0.467662	
mm_162901.1	chr10	115556771	115556971	+	1	NA	NA	NA	-13115	NM_029982	77798	Mm.446685	NM_029982	ENSMUSG00000092210	A930009A15Rik	-	RIKEN cDNA A930009A15 gene	protein-coding	0.015000	0.487562	
mm_114218.1	chr13	56426488	56426688	+	1	NA	NA	NA	-11767	NM_177809	328258	Mm.482177	NM_177809	ENSMUSG00000021509	Slc25a48	AU042651|E230025K15	solute carrier family 25, member 48	protein-coding	0.010000	0.542289	
mm_74045.1	chr8	122015107	122015307	+	1	NA	NA	NA	37183	NR_106096	102466915		NR_106096	ENSMUSG00000099140	Mir7237	Gm27482|mmu-mir-7237	microRNA 7237	ncRNA	0.010000	0.562189	
mm_111429.1	chr12	91745866	91746066	-	1	NA	NA	NA	40470	NM_175367	108800	Mm.23125	NM_175367	ENSMUSG00000020961	Ston2	4933401N24Rik|AI425999|AW544599	stonin 2	protein-coding	0.015000	0.522388	
mm_55090.1	chr6	49245457	49245657	-	1	NA	NA	NA	18495	NM_001347209	101214	Mm.196598	NM_198102	ENSMUSG00000029817	Tra2a	1500010G04Rik|AL022798|G430041M01Rik|mAWMS1	transformer 2 alpha homolog (Drosophila)	protein-coding	0.050000	0.467662	
mm_84092.1	chr9	58239499	58239699	-	1	NA	NA	NA	10187	NM_178087	18854	Mm.392123	NM_008884	ENSMUSG00000036986	Pml	1200009E24Rik|AI661194|Trim19	promyelocytic leukemia	protein-coding	0.005000	0.313433	
mm_113277.1	chr13	30003278	30003478	+	1	NA	NA	NA	-17315	NM_010093	13557	Mm.268356	NM_010093	ENSMUSG00000016477	E2f3	E2F3b|E2f3a	E2F transcription factor 3	protein-coding	0.035000	0.537313	
mm_14385.1	chr2	129636105	129636305	+	1	NA	NA	NA	43036	NM_001291022	19261	Mm.1682	NM_007547	ENSMUSG00000037902	Sirpa	AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP	signal-regulatory protein alpha	protein-coding	0.010000	0.492537	
mm_56440.1	chr6	97459170	97459370	-	1	NA	NA	NA	16	NM_001346639	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.030000	0.527363	45(CCCTTTAAATGA,-,0.00)
mm_138289.1	chr17	34627561	34627761	+	1	NA	NA	NA	-226	NM_001302396	54397	Mm.373627	NM_019441	ENSMUSG00000015474	Ppt2	0610007M19Rik|AA672937	palmitoyl-protein thioesterase 2	protein-coding	0.020000	0.517413	
mm_52581.1	chr6	116650526	116650726	+	1	NA	NA	NA	-58	NM_145980	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.020000	0.522388	
mm_96936.1	chr11	70525865	70526065	+	1	NA	NA	NA	608	NM_008946	19175	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	0.020000	0.507463	
mm_44294.1	chr5	8424122	8424322	-	1	NA	NA	NA	1384	NM_178766	319653	Mm.146262	NM_178766	ENSMUSG00000054099	Slc25a40	B230315F11Rik	solute carrier family 25, member 40	protein-coding	0.030000	0.442786	
mm_115077.1	chr13	102036111	102036311	+	1	NA	NA	NA	-267994	NM_001077495	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.025000	0.487562	
mm_3496.1	chr1	150106668	150106868	+	1	NA	NA	NA	6737	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.432836	
mm_104229.1	chr11	88622707	88622907	-	1	NA	NA	NA	3556	NR_131025	68397	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	0.015000	0.402985	
mm_106778.1	chr12	4634532	4634732	+	1	NA	NA	NA	41624	NM_001198968	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.035000	0.507463	
mm_97572.1	chr11	78939952	78940152	+	1	NA	NA	NA	14761	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.035000	0.587065	
mm_100079.1	chr11	115463705	115463905	+	1	NA	NA	NA	1332	NM_001080934	217316	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	0.015000	0.487562	
mm_58624.1	chr7	5079264	5079464	+	1	NA	NA	NA	-871	NM_010147	13854	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0.020000	0.597015	
mm_76755.1	chr8	95488604	95488804	-	1	NA	NA	NA	116	NM_009974	13000	Mm.51136	NM_009974	ENSMUSG00000046707	Csnk2a2	1110035J23Rik|C77789|CK2	casein kinase 2, alpha prime polypeptide	protein-coding	0.175000	0.840796	
mm_48176.1	chr5	137307449	137307649	-	1	NA	NA	NA	125	NM_031405	83701	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	0.120000	0.676617	
mm_142891.1	chr17	51833026	51833226	-	1	NA	NA	NA	164	NM_001163632	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.130000	0.776119	
mm_31483.1	chr4	52450761	52450961	+	1	NA	NA	NA	11640	NM_001301412	14211	Mm.2999	NM_008017	ENSMUSG00000028312	Smc2	5730502P04Rik|AI255214|AW545314|CAP-E|CAPE|Fin16|SMC-2|Smc2l1	structural maintenance of chromosomes 2	protein-coding	0.020000	0.398010	-93(TTGTTTTAAAGG,-,0.00)
mm_106718.1	chr12	3834797	3834997	+	1	NA	NA	NA	27347	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.000000	0.572139	-28(GGCTCTTAGAGG,-,0.00)
mm_41425.1	chr5	90892467	90892667	+	1	NA	NA	NA	1322	NM_008176	14825	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.010000	0.363184	
mm_89811.1	chr10	103367620	103367820	+	1	NA	NA	NA	-88	NM_001252330	103098	Mm.458408	NM_175328	ENSMUSG00000019894	Slc6a15	AA536730|AI326450|AI326451|v7-3	solute carrier family 6 (neurotransmitter transporter), member 15	protein-coding	0.060000	0.656716	
mm_86609.1	chr10	13964705	13964905	+	1	NA	NA	NA	-1574	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.110000	0.701493	
mm_38920.1	chr4	150001319	150001519	-	1	NA	NA	NA	1817	NM_001291004	100198	Mm.22183	NM_173371	ENSMUSG00000028980	H6pd	AI785303|G6pd1|Gpd-1|Gpd1	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	protein-coding	0.025000	0.492537	
mm_2804.1	chr1	130852034	130852234	+	1	NA	NA	NA	-13643	NM_026976	69169	Mm.46042	NM_026976	ENSMUSG00000042474	Fcmr	1810037B05Rik|Faim3|FcmuR|Toso	Fc fragment of IgM receptor	protein-coding	0.005000	0.407960	-92(CCTCATATAAGG,-,0.00)
mm_167902.1	chrX	75416293	75416493	-	1	NA	NA	NA	191	NM_010839	105886298	Mm.16366	NM_010839	ENSMUSG00000090110	Cmc4	Mtcp1nb|p8MTCP1	C-x(9)-C motif containing 4	protein-coding	0.095000	0.676617	
mm_99584.1	chr11	104289512	104289712	+	1	NA	NA	NA	58176	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.010000	0.522388	
mm_150255.1	chr19	34192238	34192438	+	1	NA	NA	NA	68	NM_029682	76630	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.050000	0.582090	
mm_77255.1	chr8	115706643	115706843	-	1	NA	NA	NA	151	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.065000	0.601990	
mm_69518.1	chr7	135528492	135528692	-	1	NA	NA	NA	62	NM_178669	212070	Mm.39721	NM_178669	ENSMUSG00000050866	Clrn3	AI649392|Tmem12	clarin 3	protein-coding	0.030000	0.432836	
mm_112247.1	chr12	113588628	113588828	-	1	NA	NA	NA	44820	NM_174885	238406	Mm.188683	NM_174885	ENSMUSG00000043945	Adam6a	Adam6|tMDCIV	a disintegrin and metallopeptidase domain 6A	protein-coding	0.000000	0.507463	
mm_117136.1	chr13	60940087	60940287	-	1	NA	NA	NA	1748	NM_009411	21984	Mm.2372	NM_009411	ENSMUSG00000033834	Tpbpa	AV033951|Tb-1|Tb1|Tpbp|b2b1247Clo	trophoblast specific protein alpha	protein-coding	0.015000	0.378109	-73(TCTCATAAAAGC,-,0.00)
mm_147317.1	chr18	42196589	42196789	-	1	NA	NA	NA	20	NM_027072	69401	Mm.34841	NM_027072	ENSMUSG00000059455	Plac8l1	1700009N18Rik|1700015M15Rik	PLAC8-like 1	protein-coding	0.000000	0.432836	-39(CTGTTTAAAGGC,-,0.00)
mm_169345.1	chr14	16144517	16144717	+	1	NA	NA	NA	-104697	NM_021504	59007	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	0.020000	0.502488	-30(TCCTTTATAAGT,-,0.00)
mm_134619.1	chr16	21333176	21333376	-	1	NA	NA	NA	80	NR_131983	76222	Mm.86031	NR_131983		Magef1	6430590I03Rik	melanoma antigen family F, 1	pseudo	0.110000	0.716418	
mm_67754.1	chr7	92665958	92666158	-	1	NA	NA	NA	3854	NM_029078	74737	Mm.288645	NM_029078	ENSMUSG00000041328	Pcf11	2500001H09Rik|5730417B17Rik|C77803	PCF11 cleavage and polyadenylation factor subunit	protein-coding	0.000000	0.288557	39(AACTTTAAAGGC,-,0.00),49(GCTTATAAAGTT,+,0.00)
mm_117147.1	chr13	61164104	61164304	-	1	NA	NA	NA	-16	NM_020284	56835	Mm.315715	NM_020284	ENSMUSG00000055679	Ctsr	AI428350	cathepsin R	protein-coding	0.000000	0.502488	
mm_93068.1	chr10	89257585	89257785	-	1	NA	NA	NA	105	NM_001277188	320091	Mm.236464	NM_178773	ENSMUSG00000035189	Ano4	A330096O15Rik|Gm65|Tmem16d	anoctamin 4	protein-coding	0.035000	0.611940	
mm_101562.1	chr11	34075000	34075200	-	1	NA	NA	NA	27899	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.005000	0.462687	
mm_108092.1	chr12	74296760	74296960	+	1	NA	NA	NA	-614	NM_198866	386753	Mm.341686	NM_198866	ENSMUSG00000029878	Dbpht2	Spot2	DNA binding protein with his-thr domain	protein-coding	0.010000	0.358209	-45(GGCCTTTAAGAG,-,0.00),-43(CCTTTAAGAGTT,+,0.00),0(CCTTATAGGCTG,+,0.00)
mm_29618.1	chr3	121291506	121291706	-	1	NA	NA	NA	-211	NM_024178	66789	Mm.269881	NM_024178	ENSMUSG00000039887	Alg14	5430428G01Rik|AI854024	asparagine-linked glycosylation 14	protein-coding	0.045000	0.497512	
mm_128024.1	chr15	24857576	24857776	-	1	NA	NA	NA	556088	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.020000	0.328358	
mm_37200.1	chr4	117835746	117835946	-	1	NA	NA	NA	588	NM_008135	14664	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	0.125000	0.721393	
mm_146335.1	chr18	82338256	82338456	+	1	NA	NA	NA	68421	NM_008082	14427	Mm.6219	NM_008082	ENSMUSG00000024553	Galr1	Galnr1	galanin receptor 1	protein-coding	0.040000	0.472637	
mm_89324.1	chr10	87931359	87931559	+	1	NA	NA	NA	-35212	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.278607	
mm_138319.1	chr17	34837024	34837224	+	1	NA	NA	NA	105	NM_001163770	112403	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	0.120000	0.681592	
mm_110997.1	chr12	78749495	78749695	-	1	NA	NA	NA	648	NM_019579	56217	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	0.045000	0.512438	
mm_150313.1	chr19	34573254	34573454	+	1	NA	NA	NA	-10175	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.000000	0.492537	
mm_106938.1	chr12	8674340	8674540	+	1	NA	NA	NA	181	NM_001160220	80913	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.140000	0.761194	
mm_155213.1	chrX	56787608	56787808	+	1	NA	NA	NA	1181	NM_001287800	14199	Mm.3126	NM_010211	ENSMUSG00000023092	Fhl1	FHL-1|KyoT|RAM14-1|SLIM|SLIM-1	four and a half LIM domains 1	protein-coding	0.005000	0.482587	
mm_100770.1	chr11	4747070	4747270	-	1	NA	NA	NA	-392	NM_138948	192650	Mm.207056	NM_138948	ENSMUSG00000009075	Cabp7	-	calcium binding protein 7	protein-coding	0.180000	0.845771	
mm_107822.1	chr12	69122880	69123080	+	1	NA	NA	NA	36206	NM_009093	20090	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0.030000	0.532338	
mm_3791.1	chr1	157412557	157412757	+	1	NA	NA	NA	-62	NM_177644	226525	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	0.115000	0.651741	
mm_104644.1	chr11	97537123	97537323	-	1	NA	NA	NA	-36883	NM_001289118	100141474	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.045000	0.666667	
mm_131328.1	chr16	13109822	13110022	+	1	NA	NA	NA	186	NM_015769	50505	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	0.120000	0.676617	
mm_8264.1	chr1	139304671	139304871	-	1	NA	NA	NA	72305	NM_133239	170788	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	0.000000	0.343284	
mm_53834.1	chr6	148109411	148109611	+	1	NA	NA	NA	62095	NM_178797	330450	Mm.447274	NM_178797	ENSMUSG00000030303	Far2	A230046P18|AW048109|BC055759|Mlstd1	fatty acyl CoA reductase 2	protein-coding	0.020000	0.517413	
mm_136412.1	chr16	93816296	93816496	-	1	NA	NA	NA	-15725	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.030000	0.517413	
mm_3323.1	chr1	137920589	137920789	+	1	NA	NA	NA	-45766	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.000000	0.402985	
mm_287.1	chr1	21349509	21349709	+	1	NA	NA	NA	-68	NM_183322	368204	Mm.26006	NM_183322	ENSMUSG00000067750	Khdc1a	AU014713|C88118|Ndg1	KH domain containing 1A	protein-coding	0.000000	0.517413	
mm_103474.1	chr11	76494421	76494621	-	1	NA	NA	NA	-26	NM_001346670	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.080000	0.726368	
mm_169519.1	chr14	8800190	8800390	-	1	NA	NA	NA	133900	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	0.055000	0.552239	
mm_30189.1	chr3	144691927	144692127	-	1	NA	NA	NA	28308	NM_001282042	54673	Mm.271775	NM_019464	ENSMUSG00000037062	Sh3glb1	AA409932|AI314629|AU015566|Bif-1|mKIAA0491	SH3-domain GRB2-like B1 (endophilin)	protein-coding	0.005000	0.442786	
mm_54745.1	chr6	41032322	41032522	-	1	NA	NA	NA	3087	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.005000	0.462687	
mm_50628.1	chr6	50394297	50394497	+	1	NA	NA	NA	-11560	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.020000	0.442786	
mm_106469.1	chr11	120086721	120086921	-	1	NA	NA	NA	6	NM_009734	12009	Mm.2556	NM_009734	ENSMUSG00000039781	Cep131	AZ1|Azi|Azi1	centrosomal protein 131	protein-coding	0.130000	0.731343	
mm_70128.1	chr7	143099777	143099977	-	1	NA	NA	NA	-5235	NM_020277	56843	Mm.286668	NM_020277	ENSMUSG00000009246	Trpm5	9430099A16Rik|LTrpC-5|Ltrpc5|Mtr1	transient receptor potential cation channel, subfamily M, member 5	protein-coding	0.000000	0.462687	
mm_87333.1	chr10	42940369	42940569	+	1	NA	NA	NA	79957	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.035000	0.567164	
mm_1968.1	chr1	86503509	86503709	+	1	NA	NA	NA	-23127	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.020000	0.592040	18(GGCTAGTAAAGG,-,0.00)
mm_128731.1	chr15	64135705	64135905	-	1	NA	NA	NA	-75357	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.015000	0.378109	
mm_63560.1	chr7	128083806	128084006	+	1	NA	NA	NA	21266	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.010000	0.422886	
mm_146368.1	chr18	82584491	82584691	+	1	NA	NA	NA	30083	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.025000	0.557214	-3(CCCCCTAAAGAG,-,0.00)
mm_8303.1	chr1	144002710	144002910	-	1	NA	NA	NA	1339	NM_009061	19735	Mm.28262	NM_009061	ENSMUSG00000026360	Rgs2	GOS8	regulator of G-protein signaling 2	protein-coding	0.010000	0.477612	66(ATCTTTAAAAGC,-,0.00),67(TCTTTAAAAGCC,+,0.00)
mm_139076.1	chr17	46678681	46678881	+	1	NA	NA	NA	-1672	NM_001277310	17256	Mm.329083	NM_010787	ENSMUSG00000002768	Mea1	Mea-1	male enhanced antigen 1	protein-coding	0.010000	0.611940	
mm_132970.1	chr16	52031463	52031663	+	1	NA	NA	NA	14	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.090000	0.701493	
mm_43020.1	chr5	123907480	123907680	+	1	NA	NA	NA	305	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.050000	0.646766	
mm_114703.1	chr13	83524454	83524654	+	1	NA	NA	NA	-189	NM_001347567	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.040000	0.547264	
mm_98800.1	chr11	97030052	97030252	+	1	NA	NA	NA	200	NM_146027	217140	Mm.46189	NM_146027	ENSMUSG00000020877	Scrn2	AV001119|D11Moh48|SES2	secernin 2	protein-coding	0.040000	0.562189	
mm_105709.1	chr11	108295702	108295902	-	1	NA	NA	NA	48086	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.000000	0.318408	
mm_147907.1	chr18	65393859	65394059	-	1	NA	NA	NA	-71	NM_001037294	225638	Mm.296528	NM_001037294	ENSMUSG00000032845	Alpk2	Gm549|Hak	alpha-kinase 2	protein-coding	0.010000	0.502488	
mm_19769.1	chr2	105670212	105670412	-	1	NA	NA	NA	18	NR_002867	402728	Mm.444553	NR_002867	ENSMUSG00000086029	Pax6os1	4831410G09Rik|Pax6os	paired box 6 opposite strand 1	ncRNA	0.035000	0.522388	
mm_74545.1	chr8	10483864	10484064	-	1	NA	NA	NA	330053	NM_001319151	244281	Mm.422761	NM_001081397	ENSMUSG00000039057	Myo16	BM140241|C230040D10Rik|Gm1105|NYAP3|mKIAA0865	myosin XVI	protein-coding	0.010000	0.492537	
mm_52603.1	chr6	117173450	117173650	+	1	NA	NA	NA	5015	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.030000	0.512438	
mm_78964.1	chr9	45264789	45264989	+	1	NA	NA	NA	1818	NR_106054	102466803		NR_106054	ENSMUSG00000098361	Mir7086	Gm27643|mmu-mir-7086	microRNA 7086	ncRNA	0.025000	0.472637	
mm_62420.1	chr7	101321175	101321375	+	1	NA	NA	NA	-44	NM_019990	56018	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	0.155000	0.840796	
mm_119154.1	chr14	31506415	31506615	+	1	NA	NA	NA	11436	NM_028932	74427	Mm.491208	NM_028932	ENSMUSG00000021890	Eaf1	4933403C17Rik|AI666536	ELL associated factor 1	protein-coding	0.030000	0.447761	
mm_91427.1	chr10	33205555	33205755	-	1	NA	NA	NA	50702	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.000000	0.373134	
mm_106124.1	chr11	116412883	116413083	-	1	NA	NA	NA	49	NM_027258	217340	Mm.426344	NM_027258	ENSMUSG00000052949	Rnf157	2610036E23Rik|A130073L17Rik|mKIAA1917	ring finger protein 157	protein-coding	0.160000	0.810945	
mm_122902.1	chr14	54952994	54953194	-	1	NA	NA	NA	-3952	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.010000	0.442786	
mm_61827.1	chr7	88219443	88219643	+	1	NA	NA	NA	-58542	NM_009982	13032	Mm.89295	NM_009982	ENSMUSG00000030560	Ctsc	AI047818|CatC|DPP1|DPPI	cathepsin C	protein-coding	0.000000	0.422886	
mm_149370.1	chr19	11372475	11372675	+	1	NA	NA	NA	-2913	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.005000	0.358209	26(CTTTTTAAATGC,+,0.00)
mm_64855.1	chr7	13035360	13035560	-	1	NA	NA	NA	-683	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.035000	0.582090	
mm_65502.1	chr7	25724684	25724884	-	1	NA	NA	NA	-5731	NM_028771	52132	Mm.278798	NM_028771	ENSMUSG00000002608	Ccdc97	1200014H14Rik|2810446P04Rik|AA545218|D7Ertd462e	coiled-coil domain containing 97	protein-coding	0.030000	0.527363	
mm_122652.1	chr14	51910688	51910888	-	1	NA	NA	NA	2700	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.020000	0.447761	
mm_99442.1	chr11	102433127	102433327	+	1	NA	NA	NA	2905	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.010000	0.537313	
mm_105570.1	chr11	106580502	106580702	-	1	NA	NA	NA	32328	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.015000	0.462687	
mm_66888.1	chr7	59258642	59258842	-	1	NA	NA	NA	29990	NM_011668	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a|mKIAA4216	ubiquitin protein ligase E3A	protein-coding	0.000000	0.388060	
mm_60903.1	chr7	46712086	46712286	+	1	NA	NA	NA	-1535	NM_030233	78935	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.025000	0.537313	
mm_73023.1	chr8	94137105	94137305	+	1	NA	NA	NA	1	NM_008631	17752	Mm.1536	NM_008631	ENSMUSG00000031757	Mt4	MT-IV	metallothionein 4	protein-coding	0.015000	0.562189	
mm_5331.1	chr1	23909597	23909797	-	1	NA	NA	NA	39	NR_110972	98366	Mm.329963	NM_028534	ENSMUSG00000026155	Smap1	1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175	small ArfGAP 1	protein-coding	0.015000	0.353234	
mm_129106.1	chr15	76049137	76049337	-	1	NA	NA	NA	15651	NR_105917	102466772		NR_105917	ENSMUSG00000098451	Mir6952	Gm27948|mmu-mir-6952	microRNA 6952	ncRNA	0.015000	0.601990	
mm_68595.1	chr7	116093042	116093242	-	1	NA	NA	NA	7	NR_029433	69350	Mm.440425	NR_029433	ENSMUSG00000087621	1700003G18Rik	2610312K03Rik	RIKEN cDNA 1700003G18 gene	ncRNA	0.085000	0.572139	
mm_27430.1	chr3	51559489	51559689	-	1	NA	NA	NA	-168	NR_033624	100039684	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	0.055000	0.383085	
mm_63256.1	chr7	126649283	126649483	+	1	NA	NA	NA	74	NM_029339	75565	Mm.45686	NM_029339	ENSMUSG00000030714	Sgf29	1700023O11Rik|9530025I05Rik|Ccdc101	SAGA complex associated factor 29	protein-coding	0.115000	0.597015	
mm_86030.1	chr9	113667959	113668159	-	1	NA	NA	NA	40200	NM_001164678	18571	Mm.29816	NM_011052	ENSMUSG00000032504	Pdcd6ip	AI480591|AW544830|Aip1|Alix|C76364|Eig2|mKIAA1375	programmed cell death 6 interacting protein	protein-coding	0.000000	0.507463	
mm_161960.1	chr19	7269655	7269855	+	1	NA	NA	NA	1476	NM_001320554	104383	Mm.283859	NM_054048	ENSMUSG00000024968	Rcor2	1A13|AW122124|CoREST|Rcor|Rcor1	REST corepressor 2	protein-coding	0.010000	0.577114	
mm_34137.1	chr4	139291227	139291427	+	1	NA	NA	NA	19373	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.035000	0.492537	22(CCATTTATAGGC,+,0.00)
mm_14659.1	chr2	137676110	137676310	+	1	NA	NA	NA	-559690	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.005000	0.303483	
mm_48713.1	chr5	147307001	147307201	-	1	NA	NA	NA	148	NM_007673	12591	Mm.20358	NM_007673	ENSMUSG00000029646	Cdx2	Cdx-2	caudal type homeobox 2	protein-coding	0.045000	0.641791	
mm_80533.1	chr9	80281395	80281595	+	1	NA	NA	NA	116461	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.015000	0.422886	
mm_128098.1	chr15	27856376	27856576	-	1	NA	NA	NA	169372	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.045000	0.567164	
mm_36735.1	chr4	99194526	99194726	-	1	NA	NA	NA	479	NM_001145967	242557	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.030000	0.437811	
mm_67831.1	chr7	98361152	98361352	-	1	NA	NA	NA	36	NM_001168540	244152	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.125000	0.716418	
mm_28352.1	chr3	89667184	89667384	-	1	NA	NA	NA	-47738	NM_001038587	56417	Mm.316628	NM_019655	ENSMUSG00000027951	Adar	AV242451|Adar1|Adar1p110|Adar1p150|mZaADAR	adenosine deaminase, RNA-specific	protein-coding	0.035000	0.592040	
mm_26450.1	chr3	142637535	142637735	+	1	NA	NA	NA	-13689	NR_105802	102465200		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.010000	0.467662	
mm_116455.1	chr13	43271194	43271394	-	1	NA	NA	NA	32878	NM_001033399	328232	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	0.015000	0.477612	
mm_146824.1	chr18	21300049	21300249	-	1	NA	NA	NA	-10	NM_001033445	381126	Mm.312276	NM_001033445	ENSMUSG00000042680	Garem1	C86169|Fam59a|Garem|Gm944|mKIAA4238	GRB2 associated regulator of MAPK1 subtype 1	protein-coding	0.105000	0.706468	
mm_89843.1	chr10	106879724	106879924	+	1	NA	NA	NA	243840	NM_001142804	380660	Mm.336072	NM_198636	ENSMUSG00000035948	Acss3	8430416H19Rik|Gm874	acyl-CoA synthetase short-chain family member 3	protein-coding	0.010000	0.363184	
mm_98119.1	chr11	87127021	87127221	+	1	NA	NA	NA	46	NM_197987	68729	Mm.17436	NM_197987	ENSMUSG00000018548	Trim37	1110032A10Rik|2810004E07Rik|AI848587|AU043018|MUL|TEF3|mKIAA0898	tripartite motif-containing 37	protein-coding	0.155000	0.731343	
mm_70551.1	chr8	13056066	13056266	+	1	NA	NA	NA	-4742	NM_025834	66901	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.020000	0.427861	
mm_432.1	chr1	34498305	34498505	+	1	NA	NA	NA	-25	NM_009355	21755	Mm.10725	NM_009355	ENSMUSG00000026125	Prss39	Tesp1	protease, serine 39	protein-coding	0.055000	0.611940	
mm_148739.1	chr19	5930175	5930375	+	1	NA	NA	NA	-5459	NM_026772	104252	Mm.491103	NM_026772	ENSMUSG00000045664	Cdc42ep2	1110008C05Rik|Borg1|Cep2|D19Bwg1013e	CDC42 effector protein (Rho GTPase binding) 2	protein-coding	0.010000	0.547264	
mm_87627.1	chr10	58211334	58211534	+	1	NA	NA	NA	21241	NM_001081954	664783	Mm.482575	NM_001081954		Dux	AW822073|Dux4|Duxbl|EG664783	double homeobox	protein-coding	0.000000	0.457711	
mm_117524.1	chr13	81633077	81633277	-	1	NA	NA	NA	-33	NM_054053	110789	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.045000	0.651741	
mm_35548.1	chr4	41507632	41507832	-	1	NA	NA	NA	32	NM_028624	73721	Mm.45614	NM_028624	ENSMUSG00000028441	1110017D15Rik	Cbe1|Smrp1	RIKEN cDNA 1110017D15 gene	protein-coding	0.035000	0.547264	
mm_99223.1	chr11	101039739	101039939	+	1	NA	NA	NA	9499	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.035000	0.457711	
mm_114804.1	chr13	91461009	91461209	+	1	NA	NA	NA	12	NM_024186	66970	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.070000	0.676617	
mm_108899.1	chr12	100199412	100199612	+	1	NA	NA	NA	77	NM_009790	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.145000	0.696517	
mm_981.1	chr1	58406757	58406957	+	1	NA	NA	NA	13721	NM_025824	66882	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.025000	0.363184	5(CCCTTTATACAC,+,0.00)
mm_116441.1	chr13	43125617	43125817	-	1	NA	NA	NA	2878	NM_001005748	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.010000	0.502488	
mm_105425.1	chr11	103697941	103698141	-	1	NA	NA	NA	317	NR_102396	399609	Mm.351922	NR_102388		C130046K22Rik	-	RIKEN cDNA C130046K22 gene	ncRNA	0.085000	0.582090	
mm_138486.1	chr17	35199851	35200051	+	1	NA	NA	NA	2056	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.010000	0.492537	
mm_78797.1	chr9	44046777	44046977	+	1	NA	NA	NA	3493	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.045000	0.522388	
mm_96171.1	chr11	61488399	61488599	+	1	NA	NA	NA	3055	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.015000	0.497512	
mm_34651.1	chr4	150853704	150853904	+	1	NA	NA	NA	1145	NR_040649	73348	Mm.396218	NR_040649	ENSMUSG00000078492	1700045H11Rik	-	RIKEN cDNA 1700045H11 gene	ncRNA	0.010000	0.487562	65(CCATTAAGAGGA,+,0.00)
mm_112769.1	chr13	19358400	19358600	+	1	NA	NA	NA	37313	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.025000	0.577114	
mm_50608.1	chr6	49395477	49395677	+	1	NA	NA	NA	-27	NM_029916	77485	Mm.128054	NM_029916	ENSMUSG00000023403	Stk31	C330007K24Rik	serine threonine kinase 31	protein-coding	0.090000	0.706468	
mm_71399.1	chr8	46194099	46194299	+	1	NA	NA	NA	16810	NM_007450	11739	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	0.035000	0.482587	-52(CCTTTAATAGAC,+,0.00)
mm_62819.1	chr7	113368851	113369051	+	1	NA	NA	NA	388	NM_133700	68815	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0.040000	0.562189	
mm_169537.1	chr14	95419594	95419794	+	1	NA	NA	NA	-461572	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	0.010000	0.452736	
mm_46649.1	chr5	108629575	108629775	-	1	NA	NA	NA	102	NM_153569	231580	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	0.125000	0.701493	
mm_51966.1	chr6	91758297	91758497	+	1	NA	NA	NA	48996	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.010000	0.552239	
mm_168094.1	chr10	12868747	12868947	-	1	NA	NA	NA	-7112	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.035000	0.557214	
mm_109574.1	chr12	112130682	112130882	+	1	NA	NA	NA	-98	NR_029590	387199		NR_029590	ENSMUSG00000065574	Mir203	Mirn203|mir-203|mmu-mir-203	microRNA 203	ncRNA	0.135000	0.736318	-34(ACGCATAAAAGG,-,0.00)
mm_87929.1	chr10	62602250	62602450	+	1	NA	NA	NA	-52	NM_019553	56200	Mm.413275	NM_019553	ENSMUSG00000020075	Ddx21	AI255159|AL022742|D10Ertd645e|D10Wsu42e	DEAD (Asp-Glu-Ala-Asp) box polypeptide 21	protein-coding	0.130000	0.666667	
mm_149322.1	chr19	10842448	10842648	+	1	NA	NA	NA	4	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.015000	0.542289	
mm_7369.1	chr1	106744277	106744477	-	1	NA	NA	NA	15365	NM_027534	70750	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	0.005000	0.402985	45(TCTTATAAAGGA,+,0.00)
mm_96393.1	chr11	67249945	67250145	+	1	NA	NA	NA	12233	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.015000	0.497512	
mm_17413.1	chr2	27247132	27247332	-	1	NA	NA	NA	71	NM_138665	192166	Mm.278467	NM_138665	ENSMUSG00000009614	Sardh	-	sarcosine dehydrogenase	protein-coding	0.015000	0.601990	
mm_84057.1	chr9	58159120	58159320	-	1	NA	NA	NA	1	NM_012043	26968	Mm.367887	NM_012043	ENSMUSG00000037206	Islr	AW553146|Meflin	immunoglobulin superfamily containing leucine-rich repeat	protein-coding	0.005000	0.497512	
mm_79272.1	chr9	50754185	50754385	+	1	NA	NA	NA	1314	NM_009964	12955	Mm.178	NM_009964	ENSMUSG00000032060	Cryab	Crya-2|Crya2|HspB5|P23	crystallin, alpha B	protein-coding	0.025000	0.517413	
mm_150457.1	chr19	38264505	38264705	+	1	NA	NA	NA	-177	NM_020278	56839	Mm.298251	NM_020278	ENSMUSG00000067242	Lgi1	BB130740	leucine-rich repeat LGI family, member 1	protein-coding	0.035000	0.522388	
mm_13624.1	chr2	113442242	113442442	+	1	NA	NA	NA	1278	NM_001285459	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.025000	0.567164	
mm_136615.1	chr17	5400913	5401113	+	1	NA	NA	NA	17754	NM_175349	106557	Mm.432764	NM_175349	ENSMUSG00000101959	Ldhal6b	4933402O15Rik|AI326310|LDHL|Ldhal	lactate dehydrogenase A-like 6B	protein-coding	0.015000	0.537313	
mm_81749.1	chr9	113955877	113956077	+	1	NA	NA	NA	25043	NM_013699	22221	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0.015000	0.512438	
mm_156871.1	chrX	164506232	164506432	+	1	NA	NA	NA	8429	NM_027027	69299	Mm.79031	NM_027027	ENSMUSG00000031384	Asb9	1700011M07Rik	ankyrin repeat and SOCS box-containing 9	protein-coding	0.010000	0.542289	
mm_155975.1	chrX	106126626	106126826	+	1	NA	NA	NA	-16549	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.020000	0.452736	
mm_66907.1	chr7	59988577	59988777	-	1	NA	NA	NA	-9821	NR_028529	100217429		NR_028529		Snord64	MBII-13	small nucleolar RNA, C/D box 64	snoRNA	0.020000	0.383085	
mm_38137.1	chr4	134750155	134750355	-	1	NA	NA	NA	17749	NM_145554	100017	Mm.27486	NM_145554	ENSMUSG00000037295	Ldlrap1	AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2	low density lipoprotein receptor adaptor protein 1	protein-coding	0.015000	0.547264	
mm_61422.1	chr7	73618637	73618837	+	1	NA	NA	NA	-60342	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.090000	0.587065	
mm_99506.1	chr11	103042924	103043124	+	1	NA	NA	NA	14462	NM_008707	18107	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.010000	0.512438	
mm_156559.1	chrX	151803182	151803382	+	1	NA	NA	NA	0	NM_021523	59026	Mm.27372	NM_021523	ENSMUSG00000025261	Huwe1	5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1	HECT, UBA and WWE domain containing 1	protein-coding	0.130000	0.621891	
mm_173004.1	chrM	1862	2062	+	1	NA	NA	NA	NA	NA									0.035000	0.452736	
mm_91901.1	chr10	60189613	60189813	-	1	NA	NA	NA	29547	NM_016803	53374	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	0.010000	0.358209	
mm_22861.1	chr3	28721427	28721627	+	1	NA	NA	NA	23624	NM_031197	20526	Mm.18443	NM_031197	ENSMUSG00000027690	Slc2a2	AI266973|Glut-2|Glut2	solute carrier family 2 (facilitated glucose transporter), member 2	protein-coding	0.015000	0.393035	
mm_29254.1	chr3	107219621	107219821	-	1	NA	NA	NA	2011	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.522388	
mm_159560.1	chr4	108383356	108383556	-	1	NA	NA	NA	199	NM_001099303	545667	Mm.380025	NM_001099303	ENSMUSG00000059816	Fam159a	OTTMUSG00000008243	family with sequence similarity 159, member A	protein-coding	0.125000	0.721393	
mm_90431.1	chr10	127515683	127515883	+	1	NA	NA	NA	844	NM_001098789	407790	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	protein-coding	0.015000	0.572139	
mm_14946.1	chr2	151911108	151911308	+	1	NA	NA	NA	1	NM_009641	11602	Mm.189536	NM_009641	ENSMUSG00000027460	Angpt4	ANG-3|ANG-4|Agpt4|Ang3	angiopoietin 4	protein-coding	0.010000	0.621891	-34(GAGTATAAATAG,-,0.00)
mm_169791.1	chr16	15226662	15226862	+	1	NA	NA	NA	320116	NM_025769	66793	Mm.100270	NM_025769	ENSMUSG00000068617	Efcab1	4930449A16Rik|5430404L10Rik	EF hand calcium binding domain 1	protein-coding	0.020000	0.497512	
mm_5700.1	chr1	43196661	43196861	-	1	NA	NA	NA	0	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.000000	0.542289	
mm_116335.1	chr13	38037878	38038078	-	1	NA	NA	NA	989	NM_024242	71340	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1 (yeast)	protein-coding	0.020000	0.462687	
mm_24579.1	chr3	93444663	93444863	+	1	NA	NA	NA	2433	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.065000	0.616915	
mm_90621.1	chr10	128415088	128415288	+	1	NA	NA	NA	3572	NM_026259	67588	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	0.015000	0.517413	
mm_8550.1	chr1	155230036	155230236	-	1	NA	NA	NA	71433	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.025000	0.582090	
mm_102627.1	chr11	62538814	62539014	-	1	NA	NA	NA	347	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.135000	0.756219	
mm_144639.1	chr18	33007108	33007308	+	1	NA	NA	NA	68167	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.005000	0.422886	60(CCTTTTCTAGGA,+,0.00)
mm_136656.1	chr17	5975877	5976077	+	1	NA	NA	NA	391	NM_011523	20975	Mm.236068	NM_011523	ENSMUSG00000023805	Synj2	AI481647|SJ2|mKIAA0348	synaptojanin 2	protein-coding	0.025000	0.522388	
mm_11782.1	chr2	39008025	39008225	+	1	NA	NA	NA	-14	NM_028809	74192	Mm.38155	NM_028809	ENSMUSG00000026755	Arpc5l	2010015J01Rik|AI852867|ARC16-2|AW555592|AW742746	actin related protein 2/3 complex, subunit 5-like	protein-coding	0.135000	0.746269	
mm_48087.1	chr5	136987608	136987808	-	1	NA	NA	NA	251	NM_027318	70103	Mm.273147	NM_027318	ENSMUSG00000059518	Znhit1	2700001K05Rik|ZNFN4A1	zinc finger, HIT domain containing 1	protein-coding	0.090000	0.696517	
mm_4933.1	chr1	191097798	191097998	+	1	NA	NA	NA	-516	NM_030060	381319	Mm.6922	NM_030060	ENSMUSG00000026630	Batf3	9130211I03Rik|Snft	basic leucine zipper transcription factor, ATF-like 3	protein-coding	0.095000	0.706468	
mm_151504.1	chr19	58730415	58730615	+	1	NA	NA	NA	1628	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.010000	0.462687	
mm_57204.1	chr6	122850874	122851074	-	1	NA	NA	NA	5183	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.010000	0.502488	
mm_29475.1	chr3	115711080	115711280	-	1	NA	NA	NA	3875	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.000000	0.398010	
mm_115252.1	chr13	110397032	110397232	+	1	NA	NA	NA	2088	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.015000	0.323383	10(ACCTCTAAATGG,-,0.00)
mm_68751.1	chr7	121065232	121065432	-	1	NA	NA	NA	9198	NM_030691	80719	Mm.160384	NM_030691	ENSMUSG00000035004	Igsf6	-	immunoglobulin superfamily, member 6	protein-coding	0.005000	0.452736	
mm_153511.1	chr19	41370154	41370354	-	1	NA	NA	NA	14816	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.010000	0.542289	
mm_126521.1	chr15	81936696	81936896	+	1	NA	NA	NA	37	NM_145473	105859	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	0.025000	0.562189	-84(GTCCCTTTAAGC,-,0.00)
mm_86872.1	chr10	21995695	21995895	+	1	NA	NA	NA	1129	NM_011361	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.030000	0.437811	-32(ACGTATTAAAGG,-,0.00)
mm_147396.1	chr18	44255742	44255942	-	1	NA	NA	NA	-14285	NM_010935	18169	Mm.57234	NM_010935	ENSMUSG00000038071	Npy6r	-	neuropeptide Y receptor Y6	protein-coding	0.000000	0.393035	-32(GCTTATTAAAGA,-,0.00)
mm_126360.1	chr15	80042336	80042536	+	1	NA	NA	NA	-27628	NM_011057	18591	Mm.144089	NM_011057	ENSMUSG00000000489	Pdgfb	PDGF-B|Sis	platelet derived growth factor, B polypeptide	protein-coding	0.015000	0.517413	
mm_160371.1	chr8	34114931	34115131	+	1	NA	NA	NA	1	NM_001126314	234155	Mm.324008	NM_001126314	ENSMUSG00000071113	Mboat4	GOAT|Gm171	membrane bound O-acyltransferase domain containing 4	protein-coding	0.015000	0.477612	-33(TCCTATAAAAAG,-,0.00)
mm_27295.1	chr3	45378156	45378356	-	1	NA	NA	NA	4	NR_045172	72511	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.090000	0.636816	
mm_102803.1	chr11	68863781	68863981	-	1	NA	NA	NA	-10750	NM_023668	83431	Mm.31979	NM_023668	ENSMUSG00000018736	Ndel1	2600006O07Rik|MITAP1|NUDEL|mNudel	nudE neurodevelopment protein 1 like 1	protein-coding	0.005000	0.512438	
mm_155761.1	chrX	96167868	96168068	+	1	NA	NA	NA	71923	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.000000	0.318408	
mm_81625.1	chr9	110844405	110844605	+	1	NA	NA	NA	-1	NM_183103	74306	Mm.87419	NM_183103	ENSMUSG00000049719	Prss46	1700112C13Rik|79H19B|Tessp6	protease, serine 46	protein-coding	0.025000	0.547264	
mm_2190.1	chr1	89070348	89070548	+	1	NA	NA	NA	-14	NM_133816	98402	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.150000	0.800995	
mm_143707.1	chr17	80670848	80671048	-	1	NA	NA	NA	57077	NM_001290345	225028	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.005000	0.383085	-46(GGGCATTAATGG,-,0.00),-44(GCATTAATGGGG,+,0.00)
mm_30531.1	chr4	3231079	3231279	+	1	NA	NA	NA	-45874	NM_001167535	100312471	Mm.377218	NM_001167535	ENSMUSG00000095982	Vmn1r3	Gm11778|OTTMUSG00000004181	vomeronasal 1 receptor 3	protein-coding	0.090000	0.751244	-34(CGGCTTTAAGGG,-,0.00)
mm_126679.1	chr15	84680909	84681109	+	1	NA	NA	NA	11	NM_146061	109270	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0.110000	0.776119	
mm_88183.1	chr10	69988374	69988574	+	1	NA	NA	NA	62942	NM_009670	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.035000	0.572139	
mm_34397.1	chr4	145045791	145045991	+	1	NA	NA	NA	144775	NM_001276502	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.010000	0.502488	
mm_156947.1	chrX	169981885	169982085	+	1	NA	NA	NA	-3068	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.035000	0.527363	
mm_50144.1	chr6	41543400	41543600	+	1	NA	NA	NA	21724	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.050000	0.606965	
mm_32143.1	chr4	99656070	99656270	+	1	NA	NA	NA	-129	NM_010425	15221	Mm.4758	NM_010425	ENSMUSG00000067261	Foxd3	CWH3|Genesis|Hfh2	forkhead box D3	protein-coding	0.080000	0.646766	
mm_129291.1	chr15	77203479	77203679	-	1	NA	NA	NA	-49767	NM_001286418	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.010000	0.522388	
mm_169173.1	chr13	65699085	65699285	-	1	NA	NA	NA	-414268	NM_001177832	628709	Mm.390595	NM_001177832	ENSMUSG00000095909	Gm10324	ENSMUSG00000071302	predicted gene 10324	protein-coding	0.020000	0.522388	
mm_54067.1	chr6	14715087	14715287	-	1	NA	NA	NA	40087	NM_080464	140491	Mm.209429	NM_080464	ENSMUSG00000042717	Ppp1r3a	GM|RG1|RGL	protein phosphatase 1, regulatory (inhibitor) subunit 3A	protein-coding	0.005000	0.383085	
mm_95925.1	chr11	58306980	58307180	+	1	NA	NA	NA	11	NM_001040686	103836	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	0.095000	0.631841	
mm_167610.1	chr9	55208931	55209131	+	1	NA	NA	NA	96	NM_028049	71999	Mm.276429	NM_028049	ENSMUSG00000032309	Fbxo22	0610033L19Rik|1600016C16Rik	F-box protein 22	protein-coding	0.115000	0.691542	
mm_93700.1	chr10	118082852	118083052	-	1	NA	NA	NA	-58835	NM_001162904	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.015000	0.437811	19(GCATATAGAGTC,+,0.00)
mm_89970.1	chr10	111506307	111506507	+	1	NA	NA	NA	121	NM_009344	21664	Mm.3117	NM_009344	ENSMUSG00000020205	Phlda1	DT1P1B11|TDAG51|Tdag	pleckstrin homology like domain, family A, member 1	protein-coding	0.145000	0.791045	
mm_153061.1	chr19	32186437	32186637	-	1	NA	NA	NA	24476	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.020000	0.497512	
mm_109072.1	chr12	104345389	104345589	+	1	NA	NA	NA	7003	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.000000	0.442786	-100(CTCTTTATGGCC,+,0.00)
mm_111133.1	chr12	81532715	81532915	-	1	NA	NA	NA	96	NM_001309847	105940408		NM_001309847	ENSMUSG00000021139	Synj2bp-cox16	ARIP2a	Synj2bp-cox16 readthrough	protein-coding	0.075000	0.582090	
mm_80896.1	chr9	99632551	99632751	+	1	NA	NA	NA	3073	NM_001311142	72507	Mm.221455	NM_028258	ENSMUSG00000037784	Dzip1l	2610524A10Rik|AI663976	DAZ interacting protein 1-like	protein-coding	0.015000	0.522388	
mm_58922.1	chr7	17813974	17814174	+	1	NA	NA	NA	1392	NM_025957	67084	Mm.33709	NM_025957	ENSMUSG00000023185	Ceacam14	1600021E03Rik|1600025E09Rik|AV033953	carcinoembryonic antigen-related cell adhesion molecule 14	protein-coding	0.010000	0.432836	
mm_79738.1	chr9	62345296	62345496	+	1	NA	NA	NA	4053	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.010000	0.532338	
mm_126026.1	chr15	76698097	76698297	+	1	NA	NA	NA	1471	NM_182805	76282	Mm.30130	NM_182805	ENSMUSG00000022546	Gpt	1300007J06Rik|2310022B03Rik|ALT|ALT1|Gpt-1|Gpt1	glutamic pyruvic transaminase, soluble	protein-coding	0.040000	0.636816	
mm_107070.1	chr12	16895025	16895225	+	1	NA	NA	NA	147	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0.180000	0.815920	
mm_72383.1	chr8	81558907	81559107	+	1	NA	NA	NA	216445	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.005000	0.437811	
mm_32018.1	chr4	95052467	95052667	+	1	NA	NA	NA	-345	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.100000	0.691542	
mm_29787.1	chr3	127541344	127541544	-	1	NA	NA	NA	-3784	NR_030403	723948		NR_030403	ENSMUSG00000076252	Mir302b	Mirn302b|mir-302b	microRNA 302b	ncRNA	0.015000	0.462687	
mm_52289.1	chr6	108664645	108664845	+	1	NA	NA	NA	-3811	NR_104577	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.030000	0.577114	
mm_54898.1	chr6	47454543	47454743	-	1	NA	NA	NA	319	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.160000	0.805970	
mm_7975.1	chr1	134063269	134063469	-	1	NA	NA	NA	15786	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.050000	0.651741	-65(TCCTTTATGGGG,+,0.00)
mm_8578.1	chr1	155812771	155812971	-	1	NA	NA	NA	28	NM_023268	104009	Mm.27035	NM_023268	ENSMUSG00000033684	Qsox1	1300003H02Rik|QSOX|Qscn6|SOx	quiescin Q6 sulfhydryl oxidase 1	protein-coding	0.090000	0.691542	
mm_37464.1	chr4	123479074	123479274	-	1	NA	NA	NA	-67263	NM_001167918	442834	Mm.483803	NM_001167918		D830031N03Rik	Kiaa0754|mKIAA0754	RIKEN cDNA D830031N03 gene	protein-coding	0.000000	0.412935	
mm_118900.1	chr14	26646611	26646811	+	1	NA	NA	NA	8514	NM_007479	11843	Mm.297768	NM_007479	ENSMUSG00000021877	Arf4	AA407803	ADP-ribosylation factor 4	protein-coding	0.005000	0.308458	
mm_14782.1	chr2	145858352	145858552	+	1	NA	NA	NA	-44789	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.015000	0.417910	
mm_17807.1	chr2	33439543	33439743	-	1	NA	NA	NA	-8319	NM_001276332	241311	Mm.296512	NM_001085507	ENSMUSG00000068966	Zbtb34	Gm349|mKIAA1993	zinc finger and BTB domain containing 34	protein-coding	0.025000	0.552239	
mm_75491.1	chr8	50326740	50326940	-	1	NA	NA	NA	-41272	NR_046067	100039954	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.005000	0.373134	
mm_718.1	chr1	42695653	42695853	+	1	NA	NA	NA	-928	NR_027826	66297	Mm.45203	NM_183252	ENSMUSG00000060424	Pantr1	2610017I09Rik|Pou3f3os|linc-Brn1a	POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1	ncRNA	0.065000	0.606965	
mm_22989.1	chr3	33800096	33800296	+	1	NA	NA	NA	13	NM_025978	67120	Mm.275710	NM_025978	ENSMUSG00000027677	Ttc14	2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980	tetratricopeptide repeat domain 14	protein-coding	0.155000	0.736318	
mm_62436.1	chr7	101366483	101366683	+	1	NA	NA	NA	-11539	NM_001040112	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.000000	0.537313	
mm_36174.1	chr4	62087197	62087397	-	1	NA	NA	NA	15	NM_001039544	17842	Mm.250267	NM_010845	ENSMUSG00000066154	Mup3	MUP15|MUPIII|Mup-3|Mup25	major urinary protein 3	protein-coding	0.015000	0.487562	-34(GAGTATATAAGG,-,0.00)
mm_122539.1	chr14	47418106	47418306	-	1	NA	NA	NA	201	NM_144553	218977	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	discs, large (Drosophila) homolog-associated protein 5	protein-coding	0.070000	0.562189	
mm_154073.1	chr19	56389935	56390135	-	1	NA	NA	NA	3	NM_198059	18175	Mm.386769	NM_008733	ENSMUSG00000049134	Nrap	-	nebulin-related anchoring protein	protein-coding	0.040000	0.517413	-35(AGCTTTAAAAAC,-,0.00),-34(GCTTTAAAAACC,+,0.00)
mm_71100.1	chr8	35375678	35375878	+	1	NA	NA	NA	37	NM_177741	244416	Mm.247126	NM_177741	ENSMUSG00000046794	Ppp1r3b	6430576E21|AW821953|GL|PTG	protein phosphatase 1, regulatory (inhibitor) subunit 3B	protein-coding	0.030000	0.582090	
mm_152450.1	chr19	10829882	10830082	-	1	NA	NA	NA	76	NM_001037801	12511	Mm.290897	NM_009852	ENSMUSG00000024670	Cd6	-	CD6 antigen	protein-coding	0.035000	0.592040	
mm_94263.1	chr11	3514813	3515013	+	1	NA	NA	NA	229	NM_053267	114679	Mm.34046	NM_053267	ENSMUSG00000075702	Selenom	1500040L08Rik|A230103K18|Selm|Sepm	selenoprotein M	protein-coding	0.070000	0.656716	
mm_162930.1	chr10	123263954	123264154	+	1	NA	NA	NA	-22	NM_182807	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	0.015000	0.477612	
mm_2265.1	chr1	91179914	91180114	+	1	NA	NA	NA	192	NM_001168392	51801	Mm.3272	NM_016894	ENSMUSG00000034353	Ramp1	9130218E19Rik	receptor (calcitonin) activity modifying protein 1	protein-coding	0.120000	0.776119	
mm_97903.1	chr11	83437549	83437749	+	1	NA	NA	NA	-45	NM_025492	66330	Mm.44800	NM_025492	ENSMUSG00000035085	1700020L24Rik	-	RIKEN cDNA 1700020L24 gene	protein-coding	0.005000	0.507463	-75(TTCTAGAAAAGG,-,0.00)
mm_34687.1	chr4	151933591	151933791	+	1	NA	NA	NA	-29	NM_172704	230935	Mm.21353	NM_172704	ENSMUSG00000039768	Dnajc11	E030019A03Rik	DnaJ heat shock protein family (Hsp40) member C11	protein-coding	0.135000	0.721393	
mm_146952.1	chr18	32559772	32559972	-	1	NA	NA	NA	162	NM_001347610	71683	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	0.085000	0.696517	
mm_44489.1	chr5	23675696	23675896	-	1	NA	NA	NA	36871	NR_038090	433855	Mm.205125	NR_015554	ENSMUSG00000105987	AI506816	-	expressed sequence AI506816	ncRNA	0.115000	0.666667	
mm_21056.1	chr2	152654164	152654364	-	1	NA	NA	NA	-15197	NM_010376	14950	Mm.277327	NM_010376	ENSMUSG00000019188	H13	1200006O09Rik|4930443L17Rik|5031424B04Rik|AV020344|H-13|Hm13|PSL3|Spp	histocompatibility 13	protein-coding	0.000000	0.497512	
mm_37512.1	chr4	123896521	123896721	-	1	NA	NA	NA	-8392	NM_019660	56309	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	0.055000	0.587065	
mm_136276.1	chr16	91063731	91063931	-	1	NA	NA	NA	5314	NM_001163695	74387	Mm.236220	NM_028905	ENSMUSG00000039851	4932438H23Rik	4931406G06Rik|AI550392	RIKEN cDNA 4932438H23 gene	protein-coding	0.020000	0.447761	
mm_123491.1	chr14	66110062	66110262	-	1	NA	NA	NA	498	NM_001271421	13850	Mm.15295	NM_007940	ENSMUSG00000022040	Ephx2	CEH|Eph2|SEH|sEP	epoxide hydrolase 2, cytoplasmic	protein-coding	0.005000	0.487562	
mm_122171.1	chr14	31494161	31494361	-	1	NA	NA	NA	716	NM_025907	67011	Mm.291731	NM_025907	ENSMUSG00000021891	Mettl6	1600013P15Rik|AI467521|AU020711	methyltransferase like 6	protein-coding	0.035000	0.502488	21(CCTTAAAGAGCC,+,0.00)
mm_28417.1	chr3	90432920	90433120	-	1	NA	NA	NA	616	NM_145540	229543	Mm.268564	NM_145540	ENSMUSG00000027933	Ints3	C77668	integrator complex subunit 3	protein-coding	0.035000	0.587065	
mm_65360.1	chr7	25002730	25002930	-	1	NA	NA	NA	3107	NM_001290469	232975	Mm.44101	NM_144921	ENSMUSG00000040907	Atp1a3	Atpa-2	ATPase, Na+/K+ transporting, alpha 3 polypeptide	protein-coding	0.005000	0.487562	
mm_136816.1	chr17	12396536	12396736	+	1	NA	NA	NA	18027	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.015000	0.527363	
mm_21490.1	chr2	163357275	163357475	-	1	NA	NA	NA	40598	NM_021566	59091	Mm.34459	NM_021566	ENSMUSG00000017817	Jph2	1110002E14Rik|JP-2|Jp2	junctophilin 2	protein-coding	0.010000	0.398010	-28(GAGTTTAAAGGC,-,0.00)
mm_31409.1	chr4	48047809	48048009	+	1	NA	NA	NA	2604	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.025000	0.552239	
mm_147094.1	chr18	35649240	35649440	-	1	NA	NA	NA	27	NM_027222	69816	Mm.27252	NM_027222	ENSMUSG00000024353	Mzb1	2010001M09Rik|AV064572|PACAP|pERp1	marginal zone B and B1 cell-specific protein 1	protein-coding	0.040000	0.582090	
mm_130646.1	chr15	100614998	100615198	-	1	NA	NA	NA	12	NR_045701	78445	Mm.44383	NR_045701	ENSMUSG00000097093	C330013E15Rik	-	RIKEN cDNA C330013E15 gene	ncRNA	0.085000	0.646766	
mm_126247.1	chr15	79026898	79027098	+	1	NA	NA	NA	-1214	NM_008197	14958	Mm.24350	NM_008197	ENSMUSG00000096210	H1f0	D130017D06Rik|H1(0)|H1fv	H1 histone family, member 0	protein-coding	0.020000	0.502488	
mm_168453.1	chr11	41218975	41219175	+	1	NA	NA	NA	-463789	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.035000	0.497512	-31(CTTTAAATACCC,+,0.00)
mm_69758.1	chr7	140999386	140999586	-	1	NA	NA	NA	11258	NM_025378	66141	Mm.141021	NM_025378	ENSMUSG00000025492	Ifitm3	1110004C05Rik|Cd225|Cdw217|DSPA2b|Fgls|IP15|mil-1	interferon induced transmembrane protein 3	protein-coding	0.010000	0.447761	
mm_12000.1	chr2	57238320	57238520	+	1	NA	NA	NA	38	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.120000	0.731343	
mm_11530.1	chr2	32628314	32628514	+	1	NA	NA	NA	24	NM_001198792	11636	Mm.29189	NM_021515	ENSMUSG00000026817	Ak1	Ak-1|B430205N08Rik	adenylate kinase 1	protein-coding	0.005000	0.562189	
mm_13460.1	chr2	105674451	105674651	+	1	NA	NA	NA	-1193	NM_001244200	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.020000	0.532338	
mm_124255.1	chr14	101892235	101892435	-	1	NA	NA	NA	51712	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.020000	0.492537	
mm_93036.1	chr10	88338575	88338775	-	1	NA	NA	NA	18400	NM_027878	71712	Mm.35450	NM_027878	ENSMUSG00000020057	Dram1	1200002N14Rik|Dram	DNA-damage regulated autophagy modulator 1	protein-coding	0.010000	0.422886	
mm_44263.1	chr5	5559409	5559609	-	1	NA	NA	NA	-8	NM_153116	207704	Mm.323984	NM_153116	ENSMUSG00000040464	Gtpbp10	4930545J22Rik|BC034507	GTP-binding protein 10 (putative)	protein-coding	0.120000	0.651741	
mm_79818.1	chr9	64340329	64340529	+	1	NA	NA	NA	28	NM_172519	213550	Mm.268341	NM_172519	ENSMUSG00000032396	Dis3l	AV340375	DIS3 like exosome 3'-5' exoribonuclease	protein-coding	0.050000	0.616915	
mm_31240.1	chr4	44756546	44756746	+	1	NA	NA	NA	87	NM_138590	319885	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	0.100000	0.651741	
mm_9183.1	chr1	171059492	171059692	-	1	NA	NA	NA	-189	NM_010188	14131	Mm.22119	NM_010188	ENSMUSG00000059498	Fcgr3	CD16	Fc receptor, IgG, low affinity III	protein-coding	0.015000	0.487562	
mm_123446.1	chr14	65149740	65149940	-	1	NA	NA	NA	-51734	NM_018788	54616	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.075000	0.651741	
mm_163993.1	chr14	64104239	64104439	+	1	NA	NA	NA	16	NM_028525	73382	Mm.481055	NM_028525	ENSMUSG00000021966	Prss52	1700049K14Rik|Tesp3	protease, serine 52	protein-coding	0.015000	0.582090	
mm_127991.1	chr15	12550098	12550298	-	1	NA	NA	NA	42358	NM_001081064	68070	Mm.423205	NM_001081064	ENSMUSG00000022197	Pdzd2	4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3|mKIAA0300	PDZ domain containing 2	protein-coding	0.030000	0.552239	
mm_123464.1	chr14	65833869	65834069	-	1	NA	NA	NA	0	NM_028039	71988	Mm.249280	NM_028039	ENSMUSG00000022034	Esco2	2410004I17Rik|D030072L07Rik	establishment of sister chromatid cohesion N-acetyltransferase 2	protein-coding	0.095000	0.611940	
mm_45346.1	chr5	65858053	65858253	-	1	NA	NA	NA	-5416	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.030000	0.522388	
mm_3043.1	chr1	134040277	134040477	+	1	NA	NA	NA	2862	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|SLRR2E	fibromodulin	protein-coding	0.020000	0.562189	
mm_52448.1	chr6	113660614	113660814	+	1	NA	NA	NA	22247	NM_001113553	108960	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.040000	0.512438	
mm_51977.1	chr6	91877962	91878162	+	1	NA	NA	NA	9	NM_172730	232236	Mm.234879	NM_172730	ENSMUSG00000034083	Ccdc174	C130022K22Rik	coiled-coil domain containing 174	protein-coding	0.080000	0.577114	
mm_141484.1	chr17	31208724	31208924	-	1	NA	NA	NA	758	NM_177823	328795	Mm.387930	NM_177823	ENSMUSG00000042345	Ubash3a	5830413C03Rik|C330001M22|Sts-2|TULA|TULA-1	ubiquitin associated and SH3 domain containing, A	protein-coding	0.015000	0.492537	
mm_172083.1	chr6	145932873	145933073	-	1	NA	NA	NA	1100	NM_001310837	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.055000	0.547264	
mm_100267.1	chr11	117426107	117426307	+	1	NA	NA	NA	-4490	NR_136918	667423	Mm.383716	NR_136918	ENSMUSG00000083705	Gm8624	EG667423	ribosomal protein S23 pseudogene	pseudo	0.030000	0.557214	
mm_55512.1	chr6	69992901	69993101	-	1	NA	NA	NA	-665827	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.010000	0.427861	
mm_12719.1	chr2	78051124	78051324	+	1	NA	NA	NA	47	NR_108098	78158	Mm.78473	NR_108098	ENSMUSG00000085431	4930440I19Rik	-	RIKEN cDNA 4930440I19 gene	ncRNA	0.045000	0.497512	
mm_78854.1	chr9	44379408	44379608	+	1	NA	NA	NA	18	NM_021395	12282	Mm.116721	NM_021395	ENSMUSG00000032115	Hyou1	AI415631|CBP-140|Cab140|Grp170|Orp150	hypoxia up-regulated 1	protein-coding	0.135000	0.741294	
mm_52484.1	chr6	114643000	114643200	+	1	NA	NA	NA	3	NM_001253717	74244	Mm.275332	NM_028835	ENSMUSG00000030314	Atg7	1810013K23Rik|Agp7|Apg7l|Atg7l|Gm21553	autophagy related 7	protein-coding	0.120000	0.641791	
mm_170052.1	chr17	29007823	29008023	-	1	NA	NA	NA	14	NM_134115	106504	Mm.439986	NM_134115	ENSMUSG00000024006	Stk38	5830476G13Rik|9530097A09Rik|AA617404|Ndr1	serine/threonine kinase 38	protein-coding	0.135000	0.746269	
mm_84306.1	chr9	63602401	63602601	-	1	NA	NA	NA	-8	NM_001311098	78250	Mm.444612	NM_030068	ENSMUSG00000037801	Iqch	4921504K03Rik	IQ motif containing H	protein-coding	0.110000	0.726368	
mm_157026.1	chrX	7898867	7899067	-	1	NA	NA	NA	33	NM_001252528	54633	Mm.14616	NM_019478	ENSMUSG00000031157	Pqbp1	PQBP-1|Sfc2|npw38	polyglutamine binding protein 1	protein-coding	0.045000	0.597015	
mm_63115.1	chr7	122671249	122671449	+	1	NA	NA	NA	-395	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.050000	0.547264	
mm_56148.1	chr6	87826419	87826619	-	1	NA	NA	NA	12240	NM_133934	57905	Mm.241546	NM_133934	ENSMUSG00000030056	Isy1	5830446M03Rik|AI181014|AU020769	ISY1 splicing factor homolog	protein-coding	0.000000	0.427861	
mm_56843.1	chr6	117879420	117879620	-	1	NA	NA	NA	16443	NM_001001792	22685	Mm.249661	NM_008616	ENSMUSG00000042097	Zfp239	Mok-2|Mok2|Znf239	zinc finger protein 239	protein-coding	0.140000	0.721393	
mm_157825.1	chrX	74224705	74224905	-	1	NA	NA	NA	21729	NM_010227	192176	Mm.295533	NM_010227	ENSMUSG00000031328	Flna	ABP-280|Dilp2|F730004A14Rik|Fln1|GENA 379|filamin-1	filamin, alpha	protein-coding	0.005000	0.497512	
mm_160770.1	chr10	112270988	112271188	+	1	NA	NA	NA	-35	NM_001025581	268345	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0.010000	0.592040	
mm_39182.1	chr4	155784951	155785151	-	1	NA	NA	NA	823	NM_001033394	320587	Mm.384382	NM_001033394	ENSMUSG00000073680	Tmem88b	A230069A22Rik	transmembrane protein 88B	protein-coding	0.015000	0.611940	
mm_83204.1	chr9	41687741	41687941	-	1	NA	NA	NA	105915	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA	0.005000	0.477612	-98(ACTTTTATAGCC,+,0.00)
mm_94500.1	chr11	7197553	7197753	+	1	NA	NA	NA	-134	NM_008341	16006	Mm.21300	NM_008341	ENSMUSG00000020429	Igfbp1	-	insulin-like growth factor binding protein 1	protein-coding	0.020000	0.507463	
mm_5704.1	chr1	43447059	43447259	-	1	NA	NA	NA	1408	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.010000	0.437811	
mm_87340.1	chr10	43479125	43479325	+	1	NA	NA	NA	85	NM_199028	331623	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.150000	0.756219	
mm_100682.1	chr11	3497329	3497529	-	1	NA	NA	NA	7392	NM_172439	170835	Mm.24313	NM_172439	ENSMUSG00000034570	Inpp5j	Pib5pa|Pipp	inositol polyphosphate 5-phosphatase J	protein-coding	0.005000	0.447761	
mm_169549.1	chr15	103242280	103242480	+	1	NA	NA	NA	1926	NR_002883	434858	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.035000	0.467662	-9(TCTTTTAAGGTC,+,0.00)
mm_138733.1	chr17	36963693	36963893	+	1	NA	NA	NA	5201	NM_029602	76416	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	0.010000	0.472637	
mm_12570.1	chr2	72995835	72996035	+	1	NA	NA	NA	-15489	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.010000	0.527363	
mm_34126.1	chr4	139261877	139262077	+	1	NA	NA	NA	48723	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.015000	0.552239	
mm_155664.1	chrX	87921052	87921252	+	1	NA	NA	NA	194471	NM_001160403	331461	Mm.121680	NM_001160403	ENSMUSG00000052372	Il1rapl1	6330532G10Rik|C030039N24|IL1R8|IL1RAPL|MRX34|OPHN4|TIGIRR-2	interleukin 1 receptor accessory protein-like 1	protein-coding	0.005000	0.333333	
mm_156074.1	chrX	109161590	109161790	+	1	NA	NA	NA	-35066	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.000000	0.298507	
mm_6424.1	chr1	73930624	73930824	-	1	NA	NA	NA	-66258	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.010000	0.502488	
mm_20341.1	chr2	127656121	127656321	-	1	NA	NA	NA	474	NM_010762	17153	Mm.39040	NM_010762	ENSMUSG00000027375	Mal	Mpv17|Vip17	myelin and lymphocyte protein, T cell differentiation protein	protein-coding	0.105000	0.721393	
mm_50285.1	chr6	47453791	47453991	+	1	NA	NA	NA	-433	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	-	cullin 1	protein-coding	0.095000	0.691542	
mm_165459.1	chr2	158258119	158258319	+	1	NA	NA	NA	-22	NM_177850	329547	Mm.260883	NM_177850	ENSMUSG00000052922	Bpi	9230105K17Rik|Bpifd1	bactericidal permeablility increasing protein	protein-coding	0.030000	0.626866	
mm_158417.1	chrX	137120031	137120231	-	1	NA	NA	NA	195	NM_007957	13984	Mm.8017	NM_007957	ENSMUSG00000023443	Esx1	Spx1	extraembryonic, spermatogenesis, homeobox 1	protein-coding	0.060000	0.587065	-34(CCCTATAAAAGG,-,0.00)
mm_172981.1	chr9	97228105	97228305	-	1	NA	NA	NA	-117164	NM_138756	192287	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.010000	0.547264	
mm_65234.1	chr7	19749403	19749603	-	1	NA	NA	NA	70	NM_008990	19294	Mm.4341	NM_008990	ENSMUSG00000062300	Nectin2	AI325026|AI987993|Cd112|MPH|Pvr|Pvrl2|Pvs|nectin-2	nectin cell adhesion molecule 2	protein-coding	0.095000	0.711443	
mm_13726.1	chr2	117421578	117421778	+	1	NA	NA	NA	-78801	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.010000	0.442786	
mm_157767.1	chrX	73712433	73712633	-	1	NA	NA	NA	3671	NM_012060	27061	Mm.17	NM_012060	ENSMUSG00000002015	Bcap31	Bap31	B cell receptor associated protein 31	protein-coding	0.010000	0.407960	-2(GTTTTTAAATCC,+,0.00)
mm_65841.1	chr7	29247030	29247230	-	1	NA	NA	NA	1337	NM_028179	72275	Mm.441142	NM_028179	ENSMUSG00000030587	2200002D01Rik	2010005J02Rik|H2RSP|IMUP|IMUP-1|IMUP-2	RIKEN cDNA 2200002D01 gene	protein-coding	0.015000	0.557214	
mm_53937.1	chr6	4756973	4757173	-	1	NA	NA	NA	9767	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.045000	0.507463	
mm_64560.1	chr7	144837769	144837969	+	1	NA	NA	NA	-743	NM_008007	14174	Mm.4947	NM_008007	ENSMUSG00000031074	Fgf3	Fgf-3|Int-2|Int-P	fibroblast growth factor 3	protein-coding	0.040000	0.582090	
mm_16869.1	chr2	12300973	12301173	-	1	NA	NA	NA	-173	NR_040353	338535	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.020000	0.507463	
mm_81123.1	chr9	106463296	106463496	+	1	NA	NA	NA	2544	NM_001159652	436090	Mm.482905	NM_001159652	ENSMUSG00000091735	Gpr62	4933402E03Rik	G protein-coupled receptor 62	protein-coding	0.050000	0.681592	
mm_120041.1	chr14	56449720	56449920	+	1	NA	NA	NA	47123	NM_001033043	30054	Mm.287783	NM_001033043	ENSMUSG00000000365	Rnf17	MMIP-2|Mmip2|TDRD4	ring finger protein 17	protein-coding	0.000000	0.268657	
mm_29177.1	chr3	106521697	106521897	-	1	NA	NA	NA	-26001	NM_001286986	67171	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0.000000	0.323383	
mm_81421.1	chr9	109056186	109056386	+	1	NA	NA	NA	1420	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.020000	0.527363	
mm_13129.1	chr2	91764560	91764760	+	1	NA	NA	NA	34522	NM_001080754	228361	Mm.436667	NM_172669	ENSMUSG00000040506	Ambra1	2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736	autophagy/beclin 1 regulator 1	protein-coding	0.005000	0.407960	
mm_10610.1	chr2	19012132	19012332	+	1	NA	NA	NA	13913	NR_024323	74629	Mm.117687	NR_024323	ENSMUSG00000026736	4930426L09Rik	-	RIKEN cDNA 4930426L09 gene	ncRNA	0.000000	0.288557	
mm_138579.1	chr17	35470338	35470538	+	1	NA	NA	NA	349	NM_010391	15007	Mm.88795	NM_010391	ENSMUSG00000067235	H2-Q10	H-2Q10|Q10|Qa10	histocompatibility 2, Q region locus 10	protein-coding	0.115000	0.651741	
mm_160265.1	chr7	110844267	110844467	-	1	NA	NA	NA	14	NM_025999	67150	Mm.96867	NM_025999	ENSMUSG00000030788	Rnf141	2610110L04Rik|AA792898|AU022812|ZFP36|ZNF230	ring finger protein 141	protein-coding	0.090000	0.671642	
mm_79671.1	chr9	59676979	59677179	+	1	NA	NA	NA	20711	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.005000	0.402985	
mm_33888.1	chr4	136178180	136178380	+	1	NA	NA	NA	-2502	NM_001305399	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.020000	0.572139	
mm_105682.1	chr11	107716385	107716585	-	1	NA	NA	NA	-9	NM_007582	12299	Mm.57093	NM_007582	ENSMUSG00000020722	Cacng1	-	calcium channel, voltage-dependent, gamma subunit 1	protein-coding	0.025000	0.626866	
mm_171518.1	chr4	146565058	146565258	-	1	NA	NA	NA	-18285	NR_045468	67524	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	0.065000	0.572139	
mm_135721.1	chr16	55818859	55819059	-	1	NA	NA	NA	3179	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.025000	0.427861	44(GGATATAAATGG,-,0.00)
mm_24247.1	chr3	89145973	89146173	+	1	NA	NA	NA	9450	NM_001099779	18770	Mm.383180	NM_013631	ENSMUSG00000041237	Pklr	Pk-1|Pk1|R-PK	pyruvate kinase liver and red blood cell	protein-coding	0.000000	0.502488	
mm_35491.1	chr4	40948090	40948290	-	1	NA	NA	NA	104	NM_009736	12017	Mm.688	NM_009736	ENSMUSG00000028416	Bag1	BAG-1|Rap46	BCL2-associated athanogene 1	protein-coding	0.150000	0.761194	
mm_39570.1	chr5	23433007	23433207	+	1	NA	NA	NA	1246	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.085000	0.681592	
mm_61387.1	chr7	73105215	73105415	+	1	NA	NA	NA	-3247	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	0.005000	0.477612	
mm_34652.1	chr4	150853933	150854133	+	1	NA	NA	NA	916	NR_040649	73348	Mm.396218	NR_040649	ENSMUSG00000078492	1700045H11Rik	-	RIKEN cDNA 1700045H11 gene	ncRNA	0.025000	0.482587	
mm_148399.1	chr19	3787270	3787470	+	1	NA	NA	NA	19949	NM_001167885	225888	Mm.278578	NM_144871	ENSMUSG00000045098	Kmt5b	AA117471|C630029K18Rik|Suv4-20h1|Suv420h1	lysine methyltransferase 5B	protein-coding	0.000000	0.442786	86(ACCTCTAAGAGG,-,0.00),87(CCTCTAAGAGGG,+,0.00)
mm_151254.1	chr19	53929278	53929478	+	1	NA	NA	NA	-14928	NM_001168505	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.005000	0.333333	
mm_157180.1	chrX	9662822	9663022	-	1	NA	NA	NA	61	NM_025975	67117	Mm.29150	NM_025975	ENSMUSG00000031176	Dynlt3	2310075M16Rik|AU042796|Tcte1l	dynein light chain Tctex-type 3	protein-coding	0.045000	0.651741	
mm_68940.1	chr7	126503176	126503376	-	1	NA	NA	NA	26	NM_183020	233871	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.105000	0.691542	
mm_50420.1	chr6	48770896	48771096	+	1	NA	NA	NA	-145	NM_031247	83408	Mm.333050	NM_031247	ENSMUSG00000039264	Gimap3	2010110D23Rik|Gimap5|Ian4	GTPase, IMAP family member 3	protein-coding	0.005000	0.442786	14(AAGTCTAAAAGC,-,0.00)
mm_168886.1	chr12	46044500	46044700	+	1	NA	NA	NA	774175	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.020000	0.492537	
mm_122424.1	chr14	44789838	44790038	-	1	NA	NA	NA	-64951	NM_001162954	666744	Mm.387002	NM_001162954	ENSMUSG00000091923	Gm8267	EG666744	predicted gene 8267	protein-coding	0.005000	0.482587	-95(CCCTTTAAATGA,-,0.00)
mm_122406.1	chr14	41008138	41008338	-	1	NA	NA	NA	28	NM_001316732	70564	Mm.27227	NM_027464	ENSMUSG00000021792	Fam213a	5730469M10Rik|AU040822|Adrx|Pamm	family with sequence similarity 213, member A	protein-coding	0.005000	0.562189	76(GGCTATTTAGGG,-,0.00)
mm_93203.1	chr10	94829369	94829569	-	1	NA	NA	NA	115109	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.005000	0.547264	
mm_146225.1	chr18	77065561	77065761	+	1	NA	NA	NA	-19	NM_001164170	17344	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0.140000	0.766169	
mm_109364.1	chr12	109636314	109636514	+	1	NA	NA	NA	402	NR_046302	449562		NR_046302	ENSMUSG00000088294	AF357425	MBII-48	snoRNA AF357425	snoRNA	0.005000	0.487562	
mm_9198.1	chr1	171226109	171226309	-	1	NA	NA	NA	1155	NM_013474	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.020000	0.552239	
mm_113709.1	chr13	43493893	43494093	+	1	NA	NA	NA	-13020	NM_019930	56705	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.015000	0.422886	
mm_28868.1	chr3	97699091	97699291	-	1	NA	NA	NA	-8629	NR_106084	102466229		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	0.015000	0.552239	
mm_44246.1	chr5	5365727	5365927	-	1	NA	NA	NA	14424	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.030000	0.348259	
mm_107412.1	chr12	33964238	33964438	+	1	NA	NA	NA	6667	NM_011658	22160	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	0.005000	0.333333	
mm_10388.1	chr2	12924040	12924240	+	1	NA	NA	NA	99	NM_001305437	19212	Mm.229322	NM_008961	ENSMUSG00000026730	Pter	AI790318|Mpr56-1	phosphotriesterase related	protein-coding	0.035000	0.597015	
mm_92375.1	chr10	76388617	76388817	-	1	NA	NA	NA	-298	NR_040580	67523	Mm.437833	NR_040580	ENSMUSG00000101695	1700094J05Rik	-	RIKEN cDNA 1700094J05 gene	ncRNA	0.010000	0.502488	
mm_52150.1	chr6	97993196	97993396	+	1	NA	NA	NA	1513	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.020000	0.502488	
mm_92489.1	chr10	78298098	78298298	-	1	NA	NA	NA	42009	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.025000	0.592040	
mm_112421.1	chr13	4059494	4059694	+	1	NA	NA	NA	3	NM_134072	105387	Mm.26838	NM_134072	ENSMUSG00000033715	Akr1c14	9030611N15Rik|AW557061	aldo-keto reductase family 1, member C14	protein-coding	0.020000	0.447761	
mm_84404.1	chr9	65555098	65555298	-	1	NA	NA	NA	24889	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.010000	0.542289	
mm_50045.1	chr6	41151547	41151747	+	1	NA	NA	NA	-116138	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.010000	0.447761	-34(TCTTATAAAGGA,+,0.00)
mm_6395.1	chr1	72859706	72859906	-	1	NA	NA	NA	15059	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.015000	0.557214	
mm_82562.1	chr9	21073127	21073327	-	1	NA	NA	NA	287	NM_001039824	68165	Mm.490294	NM_001039824	ENSMUSG00000079677	Fdx1l	B230118G17Rik|Fdx2	ferredoxin 1-like	protein-coding	0.085000	0.701493	
mm_12094.1	chr2	60371157	60371357	+	1	NA	NA	NA	11974	NM_013825	17076	Mm.2074	NM_013825	ENSMUSG00000026980	Ly75	CD205|DEC-205|DEC205	lymphocyte antigen 75	protein-coding	0.010000	0.258706	
mm_43928.1	chr5	145083759	145083959	+	1	NA	NA	NA	-10	NM_019767	56443	Mm.371610	NM_019767	ENSMUSG00000029621	Arpc1a	0610010H08Rik|1110030K07Rik|41kDa|AA407347|Sid32|Sid329	actin related protein 2/3 complex, subunit 1A	protein-coding	0.125000	0.691542	
mm_30350.1	chr3	151749278	151749478	-	1	NA	NA	NA	581	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.000000	0.393035	89(TTCCATAAAAGA,-,0.00)
mm_10436.1	chr2	14174430	14174630	+	1	NA	NA	NA	6	NM_001081310	625286	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	0.005000	0.442786	-6(GTGTTTATATGC,-,0.00)
mm_124793.1	chr15	8113574	8113774	+	1	NA	NA	NA	4361	NM_133227	170762	Mm.295168	NM_133227	ENSMUSG00000022142	Nup155	D930027M19Rik|mKIAA0791	nucleoporin 155	protein-coding	0.040000	0.502488	
mm_64555.1	chr7	144741963	144742163	+	1	NA	NA	NA	-3471	NM_001242349	101772	Mm.26700	NM_178642	ENSMUSG00000031075	Ano1	Tmem16a	anoctamin 1, calcium activated chloride channel	protein-coding	0.010000	0.542289	
mm_99235.1	chr11	101063397	101063597	+	1	NA	NA	NA	-6597	NM_013792	27419	Mm.95452	NM_013792	ENSMUSG00000001751	Naglu	-	alpha-N-acetylglucosaminidase (Sanfilippo disease IIIB)	protein-coding	0.010000	0.567164	
mm_84142.1	chr9	59353348	59353548	-	1	NA	NA	NA	60	NM_175325	102774	Mm.200714	NM_175325	ENSMUSG00000025235	Bbs4	AW537059|AW742241|D9Ertd464e	Bardet-Biedl syndrome 4 (human)	protein-coding	0.085000	0.646766	
mm_163347.1	chr12	17364844	17365044	+	1	NA	NA	NA	9552	NR_037226	100526470		NR_037226	ENSMUSG00000093037	Mir3066	mir-3066|mmu-mir-3066	microRNA 3066	ncRNA	0.000000	0.318408	
mm_18443.1	chr2	60902665	60902865	-	1	NA	NA	NA	-21327	NM_001141931	56878	Mm.259667	NM_020296	ENSMUSG00000026970	Rbms1	2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1	RNA binding motif, single stranded interacting protein 1	protein-coding	0.010000	0.368159	
mm_47616.1	chr5	125141162	125141362	-	1	NA	NA	NA	37952	NM_001253905	20602	Mm.278646	NM_011424	ENSMUSG00000029478	Ncor2	N-CoR|SMRT|SMRTe	nuclear receptor co-repressor 2	protein-coding	0.045000	0.592040	3(GTGTTTATAGGC,-,0.00)
mm_73214.1	chr8	95825254	95825454	+	1	NA	NA	NA	-17892	NM_001205226	234594	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	0.065000	0.557214	
mm_18328.1	chr2	57181655	57181855	-	1	NA	NA	NA	-1	NR_040356	767815	Mm.188065	NR_040356	ENSMUSG00000084938	BB557941	-	expressed sequence BB557941	ncRNA	0.055000	0.582090	
mm_70285.1	chr8	3640630	3640830	+	1	NA	NA	NA	9570	NM_011503	20911	Mm.7247	NM_011503	ENSMUSG00000004626	Stxbp2	C79054|Munc-18-2|Munc-18b|Munc18b|Sxtbp2|Sxtp2|Unc18-2|Unc18b|muSec1	syntaxin binding protein 2	protein-coding	0.010000	0.467662	
mm_18540.1	chr2	64916810	64917010	-	1	NA	NA	NA	105856	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0.025000	0.517413	
mm_24163.1	chr3	88532255	88532455	+	1	NA	NA	NA	-40	NM_001029890	72640	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0.010000	0.562189	
mm_74405.1	chr8	3355581	3355781	-	1	NA	NA	NA	2266	NM_001033378	319493	Mm.234565	NM_001033378	ENSMUSG00000074497	A430078G23Rik	-	RIKEN cDNA A430078G23 gene	protein-coding	0.015000	0.517413	
mm_132006.1	chr16	25801818	25802018	+	1	NA	NA	NA	2	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.015000	0.497512	
mm_120147.1	chr14	60485080	60485280	+	1	NA	NA	NA	106894	NM_001164705	72125	Mm.275499	NM_028113	ENSMUSG00000021986	Amer2	2600011E07Rik|Fam123a	APC membrane recruitment 2	protein-coding	0.010000	0.517413	
mm_56125.1	chr6	87532920	87533120	-	1	NA	NA	NA	239	NM_001037727	232201	Mm.119564	NM_175476	ENSMUSG00000030047	Arhgap25	A130039I20Rik	Rho GTPase activating protein 25	protein-coding	0.030000	0.552239	
mm_49660.1	chr6	31159397	31159597	+	1	NA	NA	NA	58977	NR_110470	232685	Mm.443019	NM_144555	ENSMUSG00000044471	Lncpint	Lincpint|MNCb-1768|Pint|linc-Pint	long non-protein coding RNA, Trp53 induced transcript	ncRNA	0.040000	0.572139	
mm_145297.1	chr18	53276493	53276693	+	1	NA	NA	NA	30931	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.020000	0.393035	0(GCCTATAAAAGT,-,0.00)
mm_48109.1	chr5	137109014	137109214	-	1	NA	NA	NA	7093	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.010000	0.537313	
mm_53179.1	chr6	125361860	125362060	+	1	NA	NA	NA	12237	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.065000	0.587065	
mm_154614.1	chrX	7652873	7653073	+	1	NA	NA	NA	-4406	NM_001290624	54630	Mm.232232	NM_175097	ENSMUSG00000031145	Prickle3	Lmo6|Sfc16	prickle planar cell polarity protein 3	protein-coding	0.015000	0.572139	
mm_136840.1	chr17	12755345	12755545	+	1	NA	NA	NA	14134	NR_027784	104103	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.005000	0.547264	
mm_51671.1	chr6	86404188	86404388	+	1	NA	NA	NA	69	NM_001164078	21841	Mm.333219	NM_011585	ENSMUSG00000071337	Tia1	2310050N03Rik|AI256674|TIA-1|mTIA-1	cytotoxic granule-associated RNA binding protein 1	protein-coding	0.095000	0.626866	
mm_113470.1	chr13	36423282	36423482	+	1	NA	NA	NA	305739	NM_001039189	69955	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.000000	0.373134	
mm_104048.1	chr11	86357816	86358016	-	1	NA	NA	NA	-391	NM_001080931	327987	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0.075000	0.502488	
mm_32388.1	chr4	106587372	106587572	+	1	NA	NA	NA	26434	NM_053272	74754	Mm.133370	NM_053272	ENSMUSG00000034926	Dhcr24	2310076D10Rik|5830417J06Rik|mKIAA0018	24-dehydrocholesterol reductase	protein-coding	0.010000	0.577114	
mm_78031.1	chr9	13827122	13827322	+	1	NA	NA	NA	-115	NM_026665	74360	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding	0.070000	0.597015	
mm_137574.1	chr17	27856432	27856632	+	1	NA	NA	NA	25	NM_001080769	224648	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	0.150000	0.766169	
mm_100907.1	chr11	6222161	6222361	-	1	NA	NA	NA	7984	NM_207242	237636	Mm.212492	NM_207242	ENSMUSG00000020447	Npc1l1	9130221N23Rik|Gm243	NPC1-like 1	protein-coding	0.035000	0.522388	7(GCTTTTCAAGCC,+,0.00)
mm_146387.1	chr18	82692479	82692679	+	1	NA	NA	NA	155	NM_177832	329002	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.210000	0.845771	
mm_53287.1	chr6	128992845	128993045	+	1	NA	NA	NA	-16	NR_015455	408064	Mm.172429	NR_015455		BC064078	-	cDNA sequence BC064078	ncRNA	0.005000	0.417910	
mm_119559.1	chr14	48694819	48695019	+	1	NA	NA	NA	25631	NR_029384	606497	Mm.165199	NR_029384	ENSMUSG00000098682	Otx2os1	-	orthodenticle homeobox 2 opposite strand 1	ncRNA	0.000000	0.572139	
mm_143627.1	chr17	78882479	78882679	-	1	NA	NA	NA	-7	NM_011163	19106	Mm.378990	NM_011163	ENSMUSG00000024079	Eif2ak2	2310047A08Rik|4732414G15Rik|AI467567|AI747578|Pkr|Prkr|Tik	eukaryotic translation initiation factor 2-alpha kinase 2	protein-coding	0.100000	0.696517	
mm_55182.1	chr6	52164382	52164582	-	1	NA	NA	NA	349	NM_010451	15399	Mm.131	NM_010451	ENSMUSG00000014704	Hoxa2	AI324701|HOX1.11|Hox-1.11	homeobox A2	protein-coding	0.085000	0.616915	
mm_127597.1	chr15	102399699	102399899	+	1	NA	NA	NA	-6517	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.050000	0.636816	
mm_130604.1	chr15	99819727	99819927	-	1	NA	NA	NA	322	NM_023063	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.020000	0.577114	
mm_131640.1	chr16	20498798	20498998	+	1	NA	NA	NA	81	NM_172265	224045	Mm.233855	NM_172265	ENSMUSG00000003235	Eif2b5	C81315	eukaryotic translation initiation factor 2B, subunit 5 epsilon	protein-coding	0.115000	0.666667	
mm_172099.1	chr6	29669816	29670016	-	1	NA	NA	NA	-24298	NM_001301407	232670	Mm.225289	NM_146173	ENSMUSG00000001763	Tspan33	1300010A20Rik|Pen	tetraspanin 33	protein-coding	0.040000	0.547264	
mm_156189.1	chrX	133908547	133908747	+	1	NA	NA	NA	222	NM_001083895	68792	Mm.263553	NM_026838	ENSMUSG00000031253	Srpx2	1110039C07Rik|SRP|SRPUL	sushi-repeat-containing protein, X-linked 2	protein-coding	0.015000	0.462687	-81(GCTTTAAGACGA,+,0.00)
mm_46350.1	chr5	102846215	102846415	-	1	NA	NA	NA	1308	NM_001346585	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.020000	0.447761	-86(CCTTATAGAACG,+,0.00)
mm_4040.1	chr1	165774480	165774680	+	1	NA	NA	NA	10800	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.005000	0.378109	
mm_34785.1	chr4	154170657	154170857	+	1	NA	NA	NA	44	NM_001162977	230971	Mm.275216	NM_172273	ENSMUSG00000057751	Megf6	2600001P17Rik|Egfl3	multiple EGF-like-domains 6	protein-coding	0.110000	0.731343	
mm_128712.1	chr15	63975353	63975553	-	1	NA	NA	NA	60992	NR_029414	74460	Mm.390801	NR_029414	ENSMUSG00000100127	Gsdmcl-ps	4933426G20Rik	gasdermin C-like, pseudogene	pseudo	0.010000	0.378109	11(TTTTTTATAGGT,+,0.00)
mm_69387.1	chr7	131329429	131329629	-	1	NA	NA	NA	-30	NM_027037	69318	Mm.233840	NM_027037	ENSMUSG00000030858	1700007K09Rik	-	RIKEN cDNA 1700007K09 gene	protein-coding	0.015000	0.462687	-56(GCTTTTAGATGA,+,0.00)
mm_162059.1	chrX	8976470	8976670	-	1	NA	NA	NA	-11	NM_001085525	434727	Mm.291786	NM_001085525	ENSMUSG00000060685	Fthl17c	EG434727|Fthl17L2|Gm14511|OTTMUSG00000016933	ferritin, heavy polypeptide-like 17, member C	protein-coding	0.040000	0.562189	
mm_173006.1	chrM	119	319	+	1	NA	NA	NA	NA	NA									0.025000	0.407960	
mm_153860.1	chr19	46558215	46558415	-	1	NA	NA	NA	14770	NM_019718	56350	Mm.22085	NM_019718	ENSMUSG00000025035	Arl3	-	ADP-ribosylation factor-like 3	protein-coding	0.030000	0.532338	
mm_135706.1	chr16	53246435	53246635	-	1	NA	NA	NA	-430791	NR_040495	73820	Mm.60493	NR_040495		4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0.010000	0.412935	
mm_36382.1	chr4	76959024	76959224	-	1	NA	NA	NA	1252771	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.010000	0.398010	
mm_69842.1	chr7	141327644	141327844	-	1	NA	NA	NA	-19	NM_001282076	54006	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	deformed epidermal autoregulatory factor 1 (Drosophila)	protein-coding	0.120000	0.661692	
mm_96502.1	chr11	68435886	68436086	+	1	NA	NA	NA	3861	NM_177320	320207	Mm.244960	NM_177320	ENSMUSG00000020901	Pik3r5	AV230647|F730038I15Rik	phosphoinositide-3-kinase, regulatory subunit 5, p101	protein-coding	0.005000	0.402985	
mm_85904.1	chr9	111056282	111056482	-	1	NA	NA	NA	862	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.055000	0.587065	
mm_59078.1	chr7	19577716	19577916	+	1	NA	NA	NA	529	NM_022409	63872	Mm.23310	NM_022409	ENSMUSG00000011267	Zfp296	2210018A16Rik|Znf296	zinc finger protein 296	protein-coding	0.050000	0.621891	
mm_112152.1	chr12	113264976	113265176	-	1	NA	NA	NA	79173	NM_153776	69195	Mm.313244	NM_153776	ENSMUSG00000049036	Tmem121	2410008J05Rik|Hole	transmembrane protein 121	protein-coding	0.000000	0.547264	
mm_48897.1	chr6	3200665	3200865	+	1	NA	NA	NA	-87754	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.050000	0.517413	
mm_133406.1	chr16	84835246	84835446	+	1	NA	NA	NA	222	NM_008065	14390	Mm.18974	NM_008065	ENSMUSG00000008976	Gabpa	GABPalpha	GA repeat binding protein, alpha	protein-coding	0.110000	0.706468	
mm_72338.1	chr8	79294927	79295127	+	1	NA	NA	NA	-51	NR_045822	234479	Mm.238026	NR_045822		Gm4890	A630049P17	predicted gene 4890	ncRNA	0.145000	0.761194	
mm_94852.1	chr11	23894667	23894867	+	1	NA	NA	NA	503	NM_172555	216578	Mm.470599	NM_172555	ENSMUSG00000020273	Papolg	9630006B20Rik	poly(A) polymerase gamma	protein-coding	0.085000	0.671642	
mm_112074.1	chr12	112619855	112620055	-	1	NA	NA	NA	-92	NM_007421	11565	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.095000	0.671642	
mm_82147.1	chr9	123774656	123774856	+	1	NA	NA	NA	7545	NM_001166625	12769	Mm.440604	NM_009913	ENSMUSG00000029530	Ccr9	A130091K22Rik|Cmkbr10|GPR-9-6	chemokine (C-C motif) receptor 9	protein-coding	0.005000	0.447761	
mm_24265.1	chr3	89187843	89188043	+	1	NA	NA	NA	4718	NM_001014995	68521	Mm.274708	NM_001014995	ENSMUSG00000032657	Fam189b	1110013L07Rik	family with sequence similarity 189, member B	protein-coding	0.025000	0.502488	
mm_122667.1	chr14	51913997	51914197	-	1	NA	NA	NA	-609	NM_013864	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.050000	0.636816	61(CTATTTATAGCG,+,0.00)
mm_161735.1	chr17	31325469	31325669	+	1	NA	NA	NA	29345	NM_001242427	224674	Mm.311395	NM_153062	ENSMUSG00000024036	Slc37a1	G3PP	solute carrier family 37 (glycerol-3-phosphate transporter), member 1	protein-coding	0.030000	0.517413	
mm_1411.1	chr1	67154256	67154456	+	1	NA	NA	NA	31329	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.000000	0.293532	
mm_133003.1	chr16	55966321	55966521	+	1	NA	NA	NA	146	NM_024218	68193	Mm.29221	NM_024218	ENSMUSG00000098274	Rpl24	0610008L05Rik|Bst	ribosomal protein L24	protein-coding	0.050000	0.557214	-61(TGCCCTATAAGG,-,0.00)
mm_25724.1	chr3	122729952	122730152	+	1	NA	NA	NA	894	NM_153422	242202	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	0.105000	0.706468	
mm_125792.1	chr15	74721599	74721799	+	1	NA	NA	NA	465	NM_198607	223626	Mm.268603	NM_198607	ENSMUSG00000056665	Them6	4930572J05Rik	thioesterase superfamily member 6	protein-coding	0.135000	0.636816	
mm_149689.1	chr19	20919062	20919262	+	1	NA	NA	NA	35040	NM_028953	13409	Mm.219585	NM_028953	ENSMUSG00000024749	Tmc1	4933416G09Rik|Beethoven|Bth|CWEA1|dn	transmembrane channel-like gene family 1	protein-coding	0.000000	0.353234	
mm_28717.1	chr3	95659294	95659494	-	1	NA	NA	NA	673	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.140000	0.711443	
mm_79308.1	chr9	52048140	52048340	+	1	NA	NA	NA	299	NM_001104617	19684	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	0.155000	0.805970	
mm_162177.1	chrX	102251634	102251834	-	1	NA	NA	NA	109	NM_007709	12705	Mm.2390	NM_007709	ENSMUSG00000051159	Cited1	AI316840|AU019144|Msg1	Cbp/p300-interacting transactivator with Glu/Asp-rich carboxy-terminal domain 1	protein-coding	0.165000	0.791045	
mm_83030.1	chr9	37255336	37255536	-	1	NA	NA	NA	302	NM_020258	56857	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.100000	0.701493	
mm_20351.1	chr2	127792386	127792586	-	1	NA	NA	NA	2	NR_015476	67885	Mm.27359	NM_175125	ENSMUSG00000051319	1500011K16Rik	-	RIKEN cDNA 1500011K16 gene	ncRNA	0.065000	0.597015	
mm_152963.1	chr19	29363662	29363862	-	1	NA	NA	NA	-1891	NM_026362	67759	Mm.275511	NM_026362	ENSMUSG00000016495	Plgrkt	1110007H22Rik|5033414D02Rik|AI852040|Plg-R(KT)|Plg-RKT	plasminogen receptor, C-terminal lysine transmembrane protein	protein-coding	0.025000	0.522388	
mm_169118.1	chr13	50119225	50119425	+	1	NA	NA	NA	130983	NM_001033438	380882	Mm.425809	NM_001033438	ENSMUSG00000095300	Gm906	-	predicted gene 906	protein-coding	0.030000	0.482587	-58(TTCTATATATGC,-,0.00)
mm_111303.1	chr12	85705515	85705715	-	1	NA	NA	NA	18895	NM_016767	53314	Mm.6672	NM_016767	ENSMUSG00000034266	Batf	B-ATF|SFA-2	basic leucine zipper transcription factor, ATF-like	protein-coding	0.050000	0.631841	
mm_59544.1	chr7	27887241	27887441	+	1	NA	NA	NA	26756	NM_001024726	545938	Mm.458180	NM_001024726	ENSMUSG00000020420	Zfp607a	4732475C15Rik|Zfp607	zinc finger protein 607A	protein-coding	0.030000	0.477612	
mm_62539.1	chr7	102267725	102267925	+	1	NA	NA	NA	1	NM_009287	20866	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0.140000	0.810945	
mm_157805.1	chrX	73930623	73930823	-	1	NA	NA	NA	127	NM_023132	19703	Mm.236969	NM_023132	ENSMUSG00000031387	Renbp	Age|Rnbp	renin binding protein	protein-coding	0.025000	0.537313	
mm_119632.1	chr14	51364147	51364347	+	1	NA	NA	NA	-18758	NR_045736	75377	Mm.402100	NR_045736		4930597G03Rik	-	RIKEN cDNA 4930597G03 gene	ncRNA	0.005000	0.452736	
mm_118022.1	chr13	100833195	100833395	-	1	NA	NA	NA	132	NM_022885	69048	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.155000	0.756219	
mm_42657.1	chr5	119669796	119669996	+	1	NA	NA	NA	-966	NM_198052	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.045000	0.626866	
mm_150765.1	chr19	44242158	44242358	+	1	NA	NA	NA	38970	NM_024450	30049	Mm.480594	NM_024450	ENSMUSG00000025202	Scd3	4930513N16Rik	stearoyl-coenzyme A desaturase 3	protein-coding	0.000000	0.452736	
mm_45432.1	chr5	67099059	67099259	-	1	NA	NA	NA	-33	NM_008888	18935	Mm.62505	NM_008888	ENSMUSG00000012520	Phox2b	Dilp1|NBPhox|Pmx2b|Px2b	paired-like homeobox 2b	protein-coding	0.020000	0.452736	
mm_158311.1	chrX	126833892	126834092	-	1	NA	NA	NA	12	NM_177705	237029	Mm.60998	NM_177705	ENSMUSG00000058670	4932411N23Rik	-	RIKEN cDNA 4932411N23 gene	protein-coding	0.005000	0.417910	5(GTCTCTTTAAGA,-,0.00)
mm_74271.1	chr8	125012864	125013064	+	1	NA	NA	NA	-33	NM_016909	53424	Mm.5248	NM_016909	ENSMUSG00000056820	Tsnax	R74833|Trax	translin-associated factor X	protein-coding	0.130000	0.731343	
mm_165192.1	chr2	32384538	32384738	+	1	NA	NA	NA	-2723	NM_198001	73737	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0.010000	0.492537	
mm_115598.1	chr13	11864419	11864619	-	1	NA	NA	NA	242426	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.010000	0.373134	
mm_152554.1	chr19	11484479	11484679	-	1	NA	NA	NA	-7459	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.005000	0.467662	54(GTCTTTTTGAGG,-,0.00)
mm_15250.1	chr2	154694115	154694315	+	1	NA	NA	NA	37189	NM_029362	75608	Mm.262480	NM_029362	ENSMUSG00000038467	Chmp4b	2010012F05Rik|C76846|Snf7-2	charged multivesicular body protein 4B	protein-coding	0.025000	0.557214	
mm_82805.1	chr9	29939696	29939896	-	1	NA	NA	NA	23333	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.035000	0.512438	
mm_102975.1	chr11	69672220	69672420	-	1	NA	NA	NA	103	NM_144958	13681	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0.065000	0.577114	-32(CGCTCTATAAGT,-,0.00)
mm_116040.1	chr13	27198699	27198899	-	1	NA	NA	NA	-104	NM_001163218	27372	Mm.291456	NM_013766	ENSMUSG00000017922	Prl3c1	Ghd7|PLP-J|Prlpi|Prlpj|decidualin	prolactin family 3, subfamily c, member 1	protein-coding	0.000000	0.482587	-34(AACTATAAGAGG,-,0.00)
mm_26446.1	chr3	142635748	142635948	+	1	NA	NA	NA	-11902	NR_105802	102465200		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.020000	0.427861	
mm_36684.1	chr4	96553457	96553657	-	1	NA	NA	NA	94	NM_010008	13110	Mm.98200	NM_010008	ENSMUSG00000052914	Cyp2j6	-	cytochrome P450, family 2, subfamily j, polypeptide 6	protein-coding	0.020000	0.557214	
mm_116647.1	chr13	49183695	49183895	-	1	NA	NA	NA	-3752	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.005000	0.527363	31(AAGTTTTAAAGG,-,0.00)
mm_115555.1	chr13	8995928	8996128	-	1	NA	NA	NA	-16	NM_027000	69237	Mm.41800	NM_027000	ENSMUSG00000021149	Gtpbp4	2610028C09Rik|Crfg|Gtpbp3|NGB|Nog1	GTP binding protein 4	protein-coding	0.095000	0.601990	
mm_83841.1	chr9	54424489	54424689	-	1	NA	NA	NA	77037	NM_172771	235380	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.000000	0.388060	
mm_53562.1	chr6	137252186	137252386	+	1	NA	NA	NA	-13	NM_001164401	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.040000	0.636816	
mm_76527.1	chr8	87472524	87472724	-	1	NA	NA	NA	-32	NM_019626	12404	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0.130000	0.746269	
mm_82246.1	chr9	4765145	4765345	-	1	NA	NA	NA	30989	NM_001113180	14802	Mm.209263	NM_019691	ENSMUSG00000025892	Gria4	GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1	glutamate receptor, ionotropic, AMPA4 (alpha 4)	protein-coding	0.005000	0.258706	
mm_139069.1	chr17	46646192	46646392	+	1	NA	NA	NA	63	NM_025302	27398	Mm.391007	NM_025302	ENSMUSG00000002767	Mrpl2	CGI-22|L2mt|MRP-L14|MRP-L2|Rpml14	mitochondrial ribosomal protein L2	protein-coding	0.115000	0.666667	
mm_140237.1	chr17	84119776	84119976	+	1	NA	NA	NA	41216	NR_045458	74473	Mm.399575	NR_045458		4933433H22Rik	-	RIKEN cDNA 4933433H22 gene	ncRNA	0.010000	0.572139	
mm_32292.1	chr4	103114684	103114884	+	1	NA	NA	NA	394	NM_001286222	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.165000	0.751244	
mm_58735.1	chr7	13030233	13030433	+	1	NA	NA	NA	4444	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.015000	0.522388	
mm_101864.1	chr11	48872210	48872410	-	1	NA	NA	NA	-964	NM_008326	15944	Mm.29938	NM_008326	ENSMUSG00000046879	Irgm1	Ifggd3|Ifi1|Iigp3|Iipg3|Irgm|LRG-47	immunity-related GTPase family M member 1	protein-coding	0.010000	0.532338	
mm_84693.1	chr9	72393865	72394065	-	1	NA	NA	NA	-44564	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.015000	0.393035	
mm_96991.1	chr11	70670155	70670355	+	1	NA	NA	NA	-839	NM_001167669	216873	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0.015000	0.582090	
mm_32384.1	chr4	106560987	106561187	+	1	NA	NA	NA	49	NM_053272	74754	Mm.133370	NM_053272	ENSMUSG00000034926	Dhcr24	2310076D10Rik|5830417J06Rik|mKIAA0018	24-dehydrocholesterol reductase	protein-coding	0.170000	0.776119	
mm_157709.1	chrX	64276822	64277022	-	1	NA	NA	NA	74	NM_178740	245446	Mm.101707	NM_178740	ENSMUSG00000046699	Slitrk4	6430513G13|D930039I09Rik	SLIT and NTRK-like family, member 4	protein-coding	0.100000	0.656716	
mm_145966.1	chr18	67800024	67800224	+	1	NA	NA	NA	17	NM_027556	70799	Mm.30857	NM_027556	ENSMUSG00000024542	Cep192	4631422C13Rik|D430014P18Rik	centrosomal protein 192	protein-coding	0.140000	0.731343	
mm_2550.1	chr1	107917159	107917359	+	1	NA	NA	NA	0	NR_102306	319596	Mm.136054	NR_102306	ENSMUSG00000100457	D830032E09Rik	-	RIKEN cDNA D830032E09 gene	ncRNA	0.020000	0.452736	
mm_30961.1	chr4	33924856	33925056	+	1	NA	NA	NA	324	NM_007726	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1R	cannabinoid receptor 1 (brain)	protein-coding	0.100000	0.721393	
mm_11400.1	chr2	31486409	31486609	+	1	NA	NA	NA	16201	NR_002687	432466	Mm.333323	NR_002687	ENSMUSG00000046687	Gm5424	EG432466	argininosuccinate synthase pseudogene	pseudo	0.035000	0.502488	
mm_51246.1	chr6	71707798	71707998	+	1	NA	NA	NA	217	NM_178608	52250	Mm.146332	NM_178608	ENSMUSG00000052852	Reep1	D6Ertd253e	receptor accessory protein 1	protein-coding	0.150000	0.766169	
mm_36641.1	chr4	94327755	94327955	-	1	NA	NA	NA	228941	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.000000	0.308458	
mm_61510.1	chr7	78783255	78783455	+	1	NA	NA	NA	224	NM_026498	67994	Mm.297033	NM_026498	ENSMUSG00000030611	Mrps11	0710005I03Rik|C79873	mitochondrial ribosomal protein S11	protein-coding	0.040000	0.537313	
mm_15692.1	chr2	163659024	163659224	+	1	NA	NA	NA	666	NM_001164053	18769	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.020000	0.432836	-98(CGGTTTAAAAAA,-,0.00)
mm_102082.1	chr11	52280114	52280314	-	1	NA	NA	NA	2381	NM_009331	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.025000	0.477612	
mm_160565.1	chr9	54980747	54980947	+	1	NA	NA	NA	-33	NM_176844	110835	Mm.103778	NM_176844	ENSMUSG00000035594	Chrna5	Acra-5|Acra5	cholinergic receptor, nicotinic, alpha polypeptide 5	protein-coding	0.025000	0.447761	
mm_61388.1	chr7	73105235	73105435	+	1	NA	NA	NA	-3267	NR_046024	625243	Mm.261798	NR_046024	ENSMUSG00000108383	Gm6567	-	predicted gene 6567	ncRNA	0.005000	0.472637	
mm_31740.1	chr4	63214042	63214242	+	1	NA	NA	NA	-1270	NM_025685	373864	Mm.194116	NM_025685	ENSMUSG00000045672	Col27a1	5730512J02Rik|AI449266	collagen, type XXVII, alpha 1	protein-coding	0.120000	0.736318	-81(CGATTTAAAAGG,-,0.00)
mm_129608.1	chr15	79932525	79932725	-	1	NA	NA	NA	21	NM_144811	52609	Mm.323442	NM_144811	ENSMUSG00000053411	Cbx7	1600014J01Rik|AI851678|D15Ertd417e	chromobox 7	protein-coding	0.160000	0.756219	
mm_102486.1	chr11	60220491	60220691	-	1	NA	NA	NA	36	NM_011480	20787	Mm.278701	NM_011480	ENSMUSG00000020538	Srebf1	ADD1|SREBP-1a|SREBP1|SREBP1c|bHLHd1	sterol regulatory element binding transcription factor 1	protein-coding	0.090000	0.671642	
mm_24710.1	chr3	95217930	95218130	+	1	NA	NA	NA	-88	NM_029885	213054	Mm.224820	NM_029885	ENSMUSG00000038766	Gabpb2	1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1	GA repeat binding protein, beta 2	protein-coding	0.085000	0.597015	
mm_27444.1	chr3	51875709	51875909	-	1	NA	NA	NA	214630	NM_001310482	211666	Mm.24679	NM_174995	ENSMUSG00000074604	Mgst2	GST2|MGST-II	microsomal glutathione S-transferase 2	protein-coding	0.005000	0.383085	
mm_114756.1	chr13	85189287	85189487	+	1	NA	NA	NA	2	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0.130000	0.716418	
mm_128578.1	chr15	57892321	57892521	-	1	NA	NA	NA	-3	NM_024207	67819	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.130000	0.701493	
mm_122783.1	chr14	54410178	54410378	-	1	NA	NA	NA	-806	NM_001253680	20540	Mm.142455	NM_011405	ENSMUSG00000000958	Slc7a7	AI790233|my+lat1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	protein-coding	0.020000	0.552239	
mm_107491.1	chr12	38783369	38783569	+	1	NA	NA	NA	-242	NM_001163154	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.000000	0.452736	-85(AGCTCTAAAAGA,-,0.00)
mm_106331.1	chr11	118342446	118342646	-	1	NA	NA	NA	-12	NM_021440	58251	Mm.439815	NM_021440	ENSMUSG00000076433	BC100451	Cep295nl|Ddc8|FS39|Kiaa1731nl	cDNA sequence BC100451	protein-coding	0.000000	0.572139	
mm_144131.1	chr18	4921456	4921656	+	1	NA	NA	NA	109070	NR_045881	100038439	Mm.387569	NR_045881	ENSMUSG00000097043	Gm10556	ENSMUSG00000073646	predicted gene 10556	ncRNA	0.045000	0.676617	
mm_149684.1	chr19	20492668	20492868	+	1	NA	NA	NA	53	NR_015502	320092	Mm.482524	NR_015502		E030003E18Rik	1700127G21Rik	RIKEN cDNA E030003E18 gene	ncRNA	0.005000	0.492537	
mm_63669.1	chr7	129962068	129962268	+	1	NA	NA	NA	3	NR_046077	100043150	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0.015000	0.452736	
mm_157817.1	chrX	74023728	74023928	-	1	NA	NA	NA	90	NM_001177975	16179	Mm.38241	NM_008363	ENSMUSG00000031392	Irak1	AA408924|IRAK|IRAK-1|IRAK1-S|IRAK1b|Il1rak|Plpk|mPLK	interleukin-1 receptor-associated kinase 1	protein-coding	0.155000	0.805970	
mm_37794.1	chr4	130519915	130520115	-	1	NA	NA	NA	54021	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.045000	0.597015	
mm_1593.1	chr1	74362039	74362239	+	1	NA	NA	NA	31	NM_001033345	241112	Mm.310460	NM_001033345	ENSMUSG00000073650	Catip	Gm216	ciliogenesis associated TTC17 interacting protein	protein-coding	0.000000	0.482587	-52(GCCCTTTAAGAG,-,0.00),-51(CCCTTTAAGAGG,-,0.00),-50(CCTTTAAGAGGC,+,0.00)
mm_26304.1	chr3	142510926	142511126	+	1	NA	NA	NA	14092	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.015000	0.437811	
mm_69335.1	chr7	129420032	129420232	-	1	NA	NA	NA	163038	NM_001080963	381925	Mm.39184	NM_001080963	ENSMUSG00000070366	Plpp4	C030048B12Rik|Gm1090|Ppapdc1a	phospholipid phosphatase 4	protein-coding	0.000000	0.492537	
mm_140156.1	chr17	80148156	80148356	+	1	NA	NA	NA	20785	NM_176963	319625	Mm.29098	NM_176963	ENSMUSG00000035473	Galm	A530057M15Rik|AU015645|AU020959	galactose mutarotase	protein-coding	0.035000	0.542289	
mm_136164.1	chr16	88563013	88563213	-	1	NA	NA	NA	70	NM_018778	54420	Mm.25836	NM_018778	ENSMUSG00000050520	Cldn8	AI648025	claudin 8	protein-coding	0.025000	0.522388	
mm_111619.1	chr12	102405385	102405585	-	1	NA	NA	NA	34328	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.010000	0.338308	
mm_99296.1	chr11	101337543	101337743	+	1	NA	NA	NA	7037	NM_009675	11754	Mm.67281	NM_009675	ENSMUSG00000019326	Aoc3	SSAO|VAP1	amine oxidase, copper containing 3	protein-coding	0.025000	0.577114	
mm_165622.1	chr3	63299637	63299837	+	1	NA	NA	NA	3642	NM_001289463	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.000000	0.328358	
mm_72919.1	chr8	91073995	91074195	+	1	NA	NA	NA	4038	NM_001282000	19651	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	retinoblastoma-like 2	protein-coding	0.020000	0.462687	76(CCTTATATGTGG,+,0.00)
mm_101836.1	chr11	48349133	48349333	-	1	NA	NA	NA	-274650	NR_105801	102466638		NR_105801	ENSMUSG00000099011	Mir6380	Gm27356|mmu-mir-6380	microRNA 6380	ncRNA	0.000000	0.353234	
mm_96078.1	chr11	60074334	60074534	+	1	NA	NA	NA	-27945	NM_001290011	18618	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	0.020000	0.542289	-33(CGCTTGAAAAGA,-,0.00)
mm_39245.1	chr5	3344118	3344318	+	1	NA	NA	NA	325	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.145000	0.711443	
mm_78884.1	chr9	44581598	44581798	+	1	NA	NA	NA	-23194	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.010000	0.517413	
mm_113484.1	chr13	37345324	37345524	+	1	NA	NA	NA	79	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.035000	0.527363	
mm_28885.1	chr3	97868072	97868272	-	1	NA	NA	NA	20535	NM_001289702	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.095000	0.656716	
mm_31354.1	chr4	47091841	47092041	+	1	NA	NA	NA	-12	NM_172693	230145	Mm.132246	NM_172693	ENSMUSG00000039774	Galnt12	9130206E10|A630062B03Rik	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12	protein-coding	0.135000	0.805970	
mm_104980.1	chr11	100257973	100258173	-	1	NA	NA	NA	2956	NM_010663	16667	Mm.14046	NM_010663	ENSMUSG00000035557	Krt17	K17|Krt1-17	keratin 17	protein-coding	0.000000	0.472637	
mm_52523.1	chr6	115601824	115602024	+	1	NA	NA	NA	-14	NM_023290	67027	Mm.101316	NM_023290	ENSMUSG00000000439	Mkrn2	2610002L04Rik|C81377	makorin, ring finger protein, 2	protein-coding	0.130000	0.751244	
mm_25104.1	chr3	101297394	101297594	+	1	NA	NA	NA	-9555	NM_013486	12481	Mm.22842	NM_013486	ENSMUSG00000027863	Cd2	LFA-2|Ly-37|Ly37	CD2 antigen	protein-coding	0.010000	0.557214	
mm_112040.1	chr12	111670641	111670841	-	1	NA	NA	NA	1597	NM_021273	12709	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.045000	0.616915	
mm_6997.1	chr1	86359384	86359584	-	1	NA	NA	NA	-29	NM_010880	17975	Mm.154378	NM_010880	ENSMUSG00000026234	Ncl	B530004O11Rik|C23|D0Nds28|D1Nds28|Nucl	nucleolin	protein-coding	0.105000	0.686567	-56(GCCCCTAAGAGC,-,0.00)
mm_1843.1	chr1	82858284	82858484	+	1	NA	NA	NA	18924	NM_001347077	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.000000	0.268657	
mm_157332.1	chrX	35881321	35881521	-	1	NA	NA	NA	-7411	NM_001009947	75974	Mm.32873	NM_177745	ENSMUSG00000031093	Dock11	5033414A21Rik|8030476J24|Zizimin2|sph238	dedicator of cytokinesis 11	protein-coding	0.005000	0.447761	-91(GAGCATTAAAGC,-,0.00)
mm_21408.1	chr2	158117390	158117590	-	1	NA	NA	NA	-25693	NR_040609	72340	Mm.443395	NR_040609	ENSMUSG00000100860	2010009K17Rik	-	RIKEN cDNA 2010009K17 gene	ncRNA	0.040000	0.567164	
mm_68814.1	chr7	125707599	125707799	-	1	NA	NA	NA	-11	NM_207239	233863	Mm.294173	NM_207239	ENSMUSG00000032777	Gtf3c1	-	general transcription factor III C 1	protein-coding	0.115000	0.721393	
mm_5620.1	chr1	40085743	40085943	-	1	NA	NA	NA	8	NR_037980	100047133	Mm.447052	NR_037980	ENSMUSG00000097899	Gm16894	-	predicted gene, 16894	ncRNA	0.055000	0.582090	
mm_136328.1	chr16	92358803	92359003	-	1	NA	NA	NA	565	NM_008424	16509	Mm.299425	NM_008424	ENSMUSG00000039639	Kcne1	Isk|MinK|nmf190	potassium voltage-gated channel, Isk-related subfamily, member 1	protein-coding	0.030000	0.616915	
mm_27210.1	chr3	35932422	35932622	-	1	NA	NA	NA	-188	NM_001205362	114893	Mm.374810	NM_033623	ENSMUSG00000027708	Dcun1d1	Rp42|SCCRO|Tes3|pTes3	DCN1, defective in cullin neddylation 1, domain containing 1 (S. cerevisiae)	protein-coding	0.145000	0.820896	
mm_41353.1	chr5	90504809	90505009	+	1	NA	NA	NA	-14040	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.025000	0.497512	
mm_86807.1	chr10	20332017	20332217	+	1	NA	NA	NA	-15702	NM_027930	71804	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0.040000	0.442786	
mm_92098.1	chr10	62892716	62892916	-	1	NA	NA	NA	-12802	NM_001253857	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.010000	0.507463	
mm_109324.1	chr12	109562211	109562411	+	1	NA	NA	NA	-1381	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.005000	0.492537	-56(GGATAGAAAAGG,-,0.00)
mm_124721.1	chr15	6579886	6580086	+	1	NA	NA	NA	139	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.025000	0.487562	
mm_96167.1	chr11	61488196	61488396	+	1	NA	NA	NA	2852	NM_029568	76293	Mm.272278	NM_029568	ENSMUSG00000042436	Mfap4	1110007F23Rik	microfibrillar-associated protein 4	protein-coding	0.010000	0.517413	
mm_19676.1	chr2	103454389	103454589	-	1	NA	NA	NA	30421	NM_010125	13711	Mm.20888	NM_010125	ENSMUSG00000027186	Elf5	ESE-2|ESE-5|ESE-5.	E74-like factor 5	protein-coding	0.010000	0.338308	
mm_151772.1	chr19	5293182	5293382	-	1	NA	NA	NA	2173	NM_030109	319322	Mm.196532	NM_030109	ENSMUSG00000024853	Sf3b2	145kDa|2610311M13Rik|2810441F20Rik|B230398H18Rik|SAP145|SF3b1|SF3b145|SF3b150	splicing factor 3b, subunit 2	protein-coding	0.000000	0.507463	
mm_45314.1	chr5	65435663	65435863	-	1	NA	NA	NA	79	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.105000	0.721393	
mm_62792.1	chr7	112679355	112679555	+	1	NA	NA	NA	135	NM_009346	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.195000	0.820896	
mm_56992.1	chr6	120916695	120916895	-	1	NA	NA	NA	25	NM_007544	12122	Mm.235081	NM_007544	ENSMUSG00000004446	Bid	2700049M22Rik|AI875481|AU022477	BH3 interacting domain death agonist	protein-coding	0.110000	0.706468	
mm_111403.1	chr12	91040499	91040699	-	1	NA	NA	NA	-5249	NR_045858	71349	Mm.442093	NR_045858		5430427M07Rik	-	RIKEN cDNA 5430427M07 gene	ncRNA	0.010000	0.417910	-32(CTATTTATAGAA,+,0.00)
mm_150245.1	chr19	34085448	34085648	+	1	NA	NA	NA	-15395	NM_023903	78753	Mm.195937	NM_023903	ENSMUSG00000056078	Lipm	4632427C23Rik|AW227514|Lipl3	lipase, family member M	protein-coding	0.000000	0.323383	
mm_104911.1	chr11	99665858	99666058	-	1	NA	NA	NA	2	NM_026834	68768	Mm.416844	NM_026834	ENSMUSG00000075566	Krtap4-6	1110054P19Rik	keratin associated protein 4-6	protein-coding	0.000000	0.487562	-36(GGGTATAAAAGG,-,0.00)
mm_160365.1	chr8	22283123	22283323	+	1	NA	NA	NA	-218	NM_199257	234129	Mm.450553	NM_181851	ENSMUSG00000031481	Tpte	Pten2	transmembrane phosphatase with tensin homology	protein-coding	0.000000	0.427861	55(AATTTTAAAAGG,-,0.00)
mm_122645.1	chr14	51870666	51870866	-	1	NA	NA	NA	-14076	NM_001029990	52535	Mm.5750	NM_001029990	ENSMUSG00000004561	Mettl17	2310032K15Rik|D14Ertd209e|Mett11d1	methyltransferase like 17	protein-coding	0.005000	0.432836	61(GTGTTTAAAAAA,-,0.00)
mm_109876.1	chr12	4918005	4918205	-	1	NA	NA	NA	752	NM_001099628	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.060000	0.572139	
mm_16665.1	chr2	6721567	6721767	-	1	NA	NA	NA	-5	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.025000	0.487562	
mm_19139.1	chr2	80447142	80447342	-	1	NA	NA	NA	154	NM_011356	20378	Mm.427436	NM_011356	ENSMUSG00000027004	Frzb	Frp|Sfrp3|frezzled|fritz|frzb-1	frizzled-related protein	protein-coding	0.020000	0.502488	
mm_81126.1	chr9	106477169	106477369	+	1	NA	NA	NA	-40	NM_145620	27966	Mm.239997	NM_145620	ENSMUSG00000041506	Rrp9	55kDa|D19435|D9Wsu10e|Rnu3ip2|U3-55k	RRP9, small subunit (SSU) processome component, homolog (yeast)	protein-coding	0.075000	0.631841	
mm_37420.1	chr4	122878313	122878513	-	1	NA	NA	NA	7644	NM_007598	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.000000	0.442786	-75(CTCCATATAAGG,-,0.00),-73(CCATATAAGGAG,+,0.00)
mm_20469.1	chr2	129370280	129370480	-	1	NA	NA	NA	478	NR_015474	329514	Mm.207315	NM_177848	ENSMUSG00000074805	Il1bos	9430083I22|Gm14047|OTTMUSG00000015529	interleukin 1 beta, opposite strand	ncRNA	0.020000	0.512438	
mm_137566.1	chr17	27825139	27825339	+	1	NA	NA	NA	-4697	NM_001271511	224647	Mm.196577	NM_001033279	ENSMUSG00000056692	D17Wsu92e	AU020189|C030010A15|C80239	DNA segment, Chr 17, Wayne State University 92, expressed	protein-coding	0.005000	0.462687	
mm_37557.1	chr4	126163220	126163420	-	1	NA	NA	NA	21	NM_001162533	66938	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	0.050000	0.636816	
mm_170236.1	chr17	87593724	87593924	-	1	NA	NA	NA	-42155	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.030000	0.492537	
mm_36952.1	chr4	109107919	109108119	-	1	NA	NA	NA	10017	NM_173350	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.005000	0.398010	
mm_72119.1	chr8	71686654	71686854	+	1	NA	NA	NA	-2498	NM_013564	16336	Mm.476857	NM_013564	ENSMUSG00000079019	Insl3	Rlf|Rlnl	insulin-like 3	protein-coding	0.030000	0.621891	
mm_57062.1	chr6	122545217	122545417	-	1	NA	NA	NA	-8492	NM_009645	11628	Mm.391503	NM_009645	ENSMUSG00000040627	Aicda	Aid|Arp2	activation-induced cytidine deaminase	protein-coding	0.005000	0.512438	
mm_159084.1	chr2	29702024	29702224	+	1	NA	NA	NA	-59404	NM_001177392	433416	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	OTTMUSG00000012686	predicted gene 13547	protein-coding	0.035000	0.512438	
mm_92708.1	chr10	80756866	80757066	-	1	NA	NA	NA	1760	NM_199322	208266	Mm.152371	NM_199322	ENSMUSG00000061589	Dot1l	A630076O07|AW907654|Dot1|KMT4|mDot1	DOT1-like, histone H3 methyltransferase (S. cerevisiae)	protein-coding	0.020000	0.562189	
mm_88778.1	chr10	80494764	80494964	+	1	NA	NA	NA	-42	NM_139226	246086	Mm.250572	NM_139226	ENSMUSG00000045518	Onecut3	OC-3|Oc3	one cut domain, family member 3	protein-coding	0.125000	0.751244	
mm_6285.1	chr1	69686027	69686227	-	1	NA	NA	NA	-167	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.035000	0.512438	
mm_74936.1	chr8	25789220	25789420	-	1	NA	NA	NA	3729	NM_026032	67207	Mm.30198	NM_026032	ENSMUSG00000037296	Lsm1	2810025O06Rik|CASM	LSM1 homolog, mRNA degradation associated	protein-coding	0.035000	0.432836	
mm_163594.1	chr13	41473686	41473886	+	1	NA	NA	NA	13574	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.000000	0.437811	
mm_96064.1	chr11	59662584	59662784	+	1	NA	NA	NA	189	NM_012027	26936	Mm.2402	NM_012027	ENSMUSG00000005417	Mprip	9530046C02|AA536749|AI647711|C76423|RIP3|Rhoip3|mKIAA0864|p116Rip	myosin phosphatase Rho interacting protein	protein-coding	0.180000	0.825871	
mm_67775.1	chr7	97082934	97083134	-	1	NA	NA	NA	1283	NM_010248	14389	Mm.42033	NM_010248	ENSMUSG00000004508	Gab2	AI463667|D130058I17Rik|p97	growth factor receptor bound protein 2-associated protein 2	protein-coding	0.000000	0.507463	
mm_94094.1	chr10	128547332	128547532	-	1	NA	NA	NA	312	NM_134003	103284	Mm.68289	NM_134003	ENSMUSG00000039810	Zc3h10	AI790326	zinc finger CCCH type containing 10	protein-coding	0.065000	0.631841	
mm_159884.1	chr6	23839334	23839534	-	1	NA	NA	NA	-13	NM_001252105	320405	Mm.259632	NM_153163	ENSMUSG00000017978	Cadps2	A230044C21Rik|Caps-2|Caps2|Cpd2	Ca2+-dependent activator protein for secretion 2	protein-coding	0.190000	0.800995	
mm_172030.1	chr6	124542231	124542431	-	1	NA	NA	NA	-10	NM_144938	50908	Mm.219527	NM_144938	ENSMUSG00000038521	C1s1	AA959438|AI255193|AI327365|C1s|C1sa	complement component 1, s subcomponent 1	protein-coding	0.000000	0.522388	84(CCTTAAAGAGAG,+,0.00)
mm_168859.1	chr12	28089220	28089420	-	1	NA	NA	NA	459017	NM_001177964	68511	Mm.310284	NM_001177964	ENSMUSG00000020633	Dcdc2c	1110015M06Rik	doublecortin domain containing 2C	protein-coding	0.015000	0.512438	
mm_126878.1	chr15	89429470	89429670	+	1	NA	NA	NA	357	NR_037154	12651	Mm.485045	NM_007692	ENSMUSG00000022617	Chkb	Chetk|Chkl|Ck|Ck/Ek|Ck/Ek-beta|Ckb|Ckekb|Ek	choline kinase beta	protein-coding	0.095000	0.666667	
mm_57206.1	chr6	122850976	122851176	-	1	NA	NA	NA	5081	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.020000	0.547264	
mm_148287.1	chr18	82572763	82572963	-	1	NA	NA	NA	18355	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.035000	0.537313	
mm_152001.1	chr19	5911534	5911734	-	1	NA	NA	NA	1237	NM_011262	19708	Mm.2651	NM_011262	ENSMUSG00000024826	Dpf2	2210010M07Rik|BAF45D|Req|ubi-d4	D4, zinc and double PHD fingers family 2	protein-coding	0.020000	0.472637	
mm_13000.1	chr2	90889878	90890078	+	1	NA	NA	NA	4192	NM_026161	67445	Mm.258993	NM_026161	ENSMUSG00000040794	C1qtnf4	0710001E10Rik|9430004J15Rik|CTRP4	C1q and tumor necrosis factor related protein 4	protein-coding	0.175000	0.756219	
mm_1167.1	chr1	60911017	60911217	+	1	NA	NA	NA	2092	NM_001281976	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.000000	0.373134	
mm_60373.1	chr7	44466569	44466769	+	1	NA	NA	NA	1234	NM_026690	68352	Mm.88478	NM_026690	ENSMUSG00000038704	Aspdh	0610012D14Rik	aspartate dehydrogenase domain containing	protein-coding	0.015000	0.621891	
mm_96088.1	chr11	60352983	60353183	+	1	NA	NA	NA	-178	NM_001039092	216810	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	0.070000	0.547264	
mm_138631.1	chr17	35854789	35854989	+	1	NA	NA	NA	-6429	NM_134122	106582	Mm.390992	NM_134122	ENSMUSG00000059791	Nrm	2610307M02Rik|AI429796	nurim (nuclear envelope membrane protein)	protein-coding	0.030000	0.487562	
mm_137035.1	chr17	17890520	17890720	+	1	NA	NA	NA	2796	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.005000	0.388060	
mm_30690.1	chr4	11535183	11535383	+	1	NA	NA	NA	-23637	NM_001039556	623474	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	0.000000	0.343284	
mm_62381.1	chr7	100806513	100806713	+	1	NA	NA	NA	56800	NM_177073	320100	Mm.40336	NM_177073	ENSMUSG00000008318	Relt	E430021K24Rik|Tnfrsf19l	RELT tumor necrosis factor receptor	protein-coding	0.005000	0.447761	
mm_22073.1	chr2	168742021	168742221	-	1	NA	NA	NA	15	NM_001289446	11981	Mm.330819	NM_015731	ENSMUSG00000027546	Atp9a	IIa	ATPase, class II, type 9A	protein-coding	0.160000	0.786070	
mm_93178.1	chr10	93539922	93540122	-	1	NA	NA	NA	11	NM_027908	71761	Mm.244518	NM_027908	ENSMUSG00000015890	Amdhd1	1300019J08Rik	amidohydrolase domain containing 1	protein-coding	0.075000	0.711443	
mm_45094.1	chr5	44226517	44226717	-	1	NA	NA	NA	-11	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.175000	0.830846	
mm_67731.1	chr7	90129920	90130120	-	1	NA	NA	NA	-84	NR_046007	78329	Mm.389940	NR_046006	ENSMUSG00000097162	2310010J17Rik	-	RIKEN cDNA 2310010J17 gene	ncRNA	0.170000	0.815920	
mm_5586.1	chr1	39552262	39552462	-	1	NA	NA	NA	-3522	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.005000	0.348259	
mm_164534.1	chr17	6307895	6308095	+	1	NA	NA	NA	9479	NM_001166629	100310872	Mm.381893	NM_001166629	ENSMUSG00000092074	Dynlt1a	-	dynein light chain Tctex-type 1A	protein-coding	0.015000	0.422886	
mm_13044.1	chr2	91096635	91096835	+	1	NA	NA	NA	57	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.025000	0.606965	
mm_73097.1	chr8	94568227	94568427	+	1	NA	NA	NA	33399	NM_028221	102122	Mm.250425	NM_028221	ENSMUSG00000031774	Fam192a	1700001O11Rik|2310065K24Rik|AI596259|Nip30	family with sequence similarity 192, member A	protein-coding	0.015000	0.532338	
mm_155259.1	chrX	57409054	57409254	+	1	NA	NA	NA	5	NM_001128625	245423		NM_001128625	ENSMUSG00000079584	Gm364	-	predicted gene 364	protein-coding	0.020000	0.517413	
mm_56004.1	chr6	86487993	86488193	-	1	NA	NA	NA	134	NR_040293	381792	Mm.333223	NR_040292	ENSMUSG00000101655	2310040G24Rik	-	RIKEN cDNA 2310040G24 gene	ncRNA	0.020000	0.487562	
mm_104729.1	chr11	98326356	98326556	-	1	NA	NA	NA	3189	NM_010895	18013	Mm.4814	NM_010895	ENSMUSG00000038255	Neurod2	Ndrf|bHLHa1	neurogenic differentiation 2	protein-coding	0.025000	0.293532	
mm_12535.1	chr2	72285667	72285867	+	1	NA	NA	NA	66	NM_178084	65964	Mm.304143	NM_023057	ENSMUSG00000004085	Map3k20	AV006891|B230120H23Rik|MLTK|MLTKalpha|MLTKbeta|Zak	mitogen-activated protein kinase kinase kinase 20	protein-coding	0.155000	0.741294	
mm_10285.1	chr2	10153495	10153695	+	1	NA	NA	NA	52	NM_172471	209378	Mm.313876	NM_172471	ENSMUSG00000025780	Itih5	4631408O11Rik|5430408M01Rik|E130106B02	inter-alpha (globulin) inhibitor H5	protein-coding	0.055000	0.631841	-73(GGGCATAAAGGG,-,0.00)
mm_135722.1	chr16	55819465	55819665	-	1	NA	NA	NA	2573	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.045000	0.512438	
mm_44768.1	chr5	31698279	31698479	-	1	NA	NA	NA	329	NM_144541	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Bre	6030405P19Rik|AI429776|B830038C02Rik	brain and reproductive organ-expressed protein	protein-coding	0.025000	0.512438	
mm_149310.1	chr19	10747891	10748091	+	1	NA	NA	NA	7044	NR_027805	403202	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0.015000	0.532338	-12(CCTTTTATGAGG,+,0.00)
mm_4468.1	chr1	173419094	173419294	+	1	NA	NA	NA	-1410	NM_001013779	383619	Mm.131453	NM_001013779	ENSMUSG00000037860	Aim2	Gm1313|Ifi210	absent in melanoma 2	protein-coding	0.000000	0.467662	
mm_45121.1	chr5	45856402	45856602	-	1	NA	NA	NA	50	NM_172153	209707	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	0.080000	0.577114	
mm_95154.1	chr11	35769713	35769913	+	1	NA	NA	NA	318	NM_145962	211347	Mm.255044	NM_145962	ENSMUSG00000018846	Pank3	-	pantothenate kinase 3	protein-coding	0.115000	0.781095	
mm_109588.1	chr12	112619943	112620143	+	1	NA	NA	NA	-4	NM_007421	11565	Mm.3440	NM_007421	ENSMUSG00000011148	Adssl1	AI528595|Adss|Adss1	adenylosuccinate synthetase like 1	protein-coding	0.105000	0.711443	
mm_21519.1	chr2	163632069	163632269	-	1	NA	NA	NA	-12681	NR_028113	68386	Mm.410649	NR_028113	ENSMUSG00000058812	0610039K10Rik	-	RIKEN cDNA 0610039K10 gene	ncRNA	0.005000	0.447761	
mm_162144.1	chrX	74429168	74429368	+	1	NA	NA	NA	-47	NM_001161422	16151	Mm.12967	NM_010547	ENSMUSG00000004221	Ikbkg	1110037D23Rik|AI848108|AI851264|AW124339|IKK[g]|NEMO	inhibitor of kappaB kinase gamma	protein-coding	0.045000	0.587065	
mm_51999.1	chr6	92816372	92816572	+	1	NA	NA	NA	84969	NM_175314	101401	Mm.158235	NM_175314	ENSMUSG00000030022	Adamts9	1810011L16Rik|8430403M15Rik|AW743315|E030027K14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 9	protein-coding	0.020000	0.557214	
mm_65798.1	chr7	28925316	28925516	-	1	NA	NA	NA	36864	NM_021895	60595	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.030000	0.497512	
mm_91667.1	chr10	43174365	43174565	-	1	NA	NA	NA	65	NM_175407	109205	Mm.153750	NM_175407	ENSMUSG00000038248	Sobp	2900009C16Rik|5330439J01Rik|JXC1|jc	sine oculis-binding protein homolog (Drosophila)	protein-coding	0.140000	0.756219	
mm_43086.1	chr5	124450097	124450297	+	1	NA	NA	NA	3493	NM_001310727	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.025000	0.447761	-90(TACTTTAAAAAG,-,0.00)
mm_57376.1	chr6	124812951	124813151	-	1	NA	NA	NA	1245	NM_009415	21991	Mm.4222	NM_009415	ENSMUSG00000023456	Tpi1	AI255506|Tpi|Tpi-1	triosephosphate isomerase 1	protein-coding	0.015000	0.512438	
mm_83942.1	chr9	56796814	56797014	-	1	NA	NA	NA	55049	NM_198673	382075	Mm.335177	NM_198673	ENSMUSG00000045620	Odf3l1	BC049697|Gm1116	outer dense fiber of sperm tails 3-like 1	protein-coding	0.100000	0.691542	
mm_55480.1	chr6	68930669	68930869	-	1	NA	NA	NA	396405	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.000000	0.398010	
mm_104113.1	chr11	86726241	86726441	-	1	NA	NA	NA	31151	NM_001003908	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.015000	0.452736	
mm_140394.1	chr17	87530822	87531022	+	1	NA	NA	NA	-83987	NM_007589	12314	Mm.329243	NM_007589	ENSMUSG00000036438	Calm2	1500001E21Rik|AL024017	calmodulin 2	protein-coding	0.040000	0.487562	-70(GGTTATTAATGG,-,0.00)
mm_152350.1	chr19	9984993	9985193	-	1	NA	NA	NA	2447	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.010000	0.368159	
mm_119008.1	chr14	29486496	29486696	+	1	NA	NA	NA	235268	NM_009785	12294	Mm.386754	NM_009785	ENSMUSG00000021991	Cacna2d3	Cacnad3|alapha2delta3	calcium channel, voltage-dependent, alpha2/delta subunit 3	protein-coding	0.000000	0.393035	
mm_94509.1	chr11	7209919	7210119	+	1	NA	NA	NA	3904	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding	0.025000	0.532338	
mm_19985.1	chr2	118546930	118547130	-	1	NA	NA	NA	569	NM_001331221	171543	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.000000	0.577114	
mm_136732.1	chr17	8283859	8284059	+	1	NA	NA	NA	146	NM_018819	55951	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	0.115000	0.676617	
mm_83138.1	chr9	40449854	40450054	-	1	NA	NA	NA	5810	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.010000	0.502488	
mm_109290.1	chr12	109559277	109559477	+	1	NA	NA	NA	-4315	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.010000	0.462687	
mm_81829.1	chr9	118059012	118059212	+	1	NA	NA	NA	18590	NM_013727	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.000000	0.427861	-100(CCATAAAAAGGC,+,0.00)
mm_152108.1	chr19	6941373	6941573	-	1	NA	NA	NA	34	NM_001177362	107173	Mm.276555	NM_207220	ENSMUSG00000024958	Gpr137	AI428855	G protein-coupled receptor 137	protein-coding	0.120000	0.686567	
mm_150983.1	chr19	46515231	46515431	+	1	NA	NA	NA	13683	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.050000	0.641791	
mm_100694.1	chr11	3529816	3530016	-	1	NA	NA	NA	9376	NM_013870	29856	Mm.188516	NM_013870	ENSMUSG00000020439	Smtn	smsmo	smoothelin	protein-coding	0.035000	0.641791	
mm_44085.1	chr5	149184478	149184678	+	1	NA	NA	NA	18	NM_001115149	231915	Mm.29402	NM_001013378	ENSMUSG00000041264	Uspl1	E430026A01Rik	ubiquitin specific peptidase like 1	protein-coding	0.085000	0.696517	
mm_42213.1	chr5	112877945	112878145	+	1	NA	NA	NA	18317	NM_028901	74376	Mm.441903	NM_028901	ENSMUSG00000072720	Myo18b	4932408L24Rik|4933411E19Rik|Gm448	myosin XVIIIb	protein-coding	0.020000	0.582090	
mm_38465.1	chr4	140620538	140620738	-	1	NA	NA	NA	28118	NM_001112723	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.010000	0.532338	
mm_89831.1	chr10	106496768	106496968	+	1	NA	NA	NA	26558	NM_001205341	327814	Mm.391424	NM_177373	ENSMUSG00000053825	Ppfia2	5330438O12|B230207K17Rik|E130120L08Rik|mKIAA4112	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding	0.005000	0.318408	
mm_42661.1	chr5	119670602	119670802	+	1	NA	NA	NA	-160	NM_198052	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.065000	0.671642	
mm_59493.1	chr7	27523161	27523361	+	1	NA	NA	NA	0	NM_001033315	233020	Mm.429716	NM_001033315	ENSMUSG00000040424	Hipk4	Gm162	homeodomain interacting protein kinase 4	protein-coding	0.010000	0.626866	
mm_158888.1	chr1	13126878	13127078	-	1	NA	NA	NA	185	NM_001081209	383491	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0.035000	0.407960	
mm_120853.1	chr14	75224009	75224209	+	1	NA	NA	NA	-18178	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.010000	0.402985	
mm_106878.1	chr12	8011408	8011608	+	1	NA	NA	NA	33831	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.378109	
mm_83245.1	chr9	42399806	42400006	-	1	NA	NA	NA	23	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.015000	0.417910	-75(CTCTTTTTAAAG,-,0.00),-74(TCTTTTTAAAGG,-,0.00),-73(CTTTTTAAAGGA,+,0.00)
mm_160663.1	chr9	119825359	119825559	-	1	NA	NA	NA	-3	NM_011887	24046	Mm.89981	NM_011887	ENSMUSG00000034115	Scn11a	NSS2|NaN|NaT|NaV1.9|SNS2	sodium channel, voltage-gated, type XI, alpha	protein-coding	0.015000	0.601990	
mm_8207.1	chr1	138123723	138123923	-	1	NA	NA	NA	51303	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.000000	0.308458	
mm_40409.1	chr5	53061273	53061473	+	1	NA	NA	NA	12020	NM_011402	20531	Mm.284891	NM_011402	ENSMUSG00000029188	Slc34a2	AA536683|D5Ertd227e|NaPi-2b|Npt2b	solute carrier family 34 (sodium phosphate), member 2	protein-coding	0.040000	0.552239	
mm_109112.1	chr12	105453941	105454141	+	1	NA	NA	NA	185	NM_001252508	268595	Mm.2388	NM_001252508	ENSMUSG00000094910	D430019H16Rik	AI852661	RIKEN cDNA D430019H16 gene	protein-coding	0.085000	0.661692	
mm_123183.1	chr14	57745994	57746194	-	1	NA	NA	NA	29	NM_015771	50523	Mm.347899	NM_015771	ENSMUSG00000021959	Lats2	4932411G09Rik|AV277261|AW228608	large tumor suppressor 2	protein-coding	0.155000	0.751244	
mm_114619.1	chr13	75962365	75962565	+	1	NA	NA	NA	-5274	NM_029343	75571	Mm.443291	NM_029343	ENSMUSG00000021590	Spata9	1700030K01Rik|4930599C08Rik|A930023H06Rik	spermatogenesis associated 9	protein-coding	0.005000	0.552239	
mm_102001.1	chr11	51262952	51263152	-	1	NA	NA	NA	-62	NM_001304744	12750	Mm.239354	NM_007714	ENSMUSG00000020385	Clk4	AI987988|C85119	CDC like kinase 4	protein-coding	0.105000	0.671642	
mm_149736.1	chr19	22138942	22139142	+	1	NA	NA	NA	-75	NM_001035239	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.075000	0.666667	
mm_92156.1	chr10	67537056	67537256	-	1	NA	NA	NA	-713	NM_010118	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.025000	0.447761	
mm_54615.1	chr6	38354503	38354703	-	1	NA	NA	NA	0	NM_028864	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.050000	0.616915	
mm_140092.1	chr17	75520525	75520725	+	1	NA	NA	NA	31321	NM_133747	72722	Mm.24641	NM_133747	ENSMUSG00000002017	Fam98a	2810405J04Rik|AL024114	family with sequence similarity 98, member A	protein-coding	0.000000	0.358209	
mm_117150.1	chr13	61203312	61203512	-	1	NA	NA	NA	-20	NM_021445	58518	Mm.143794	NM_021445	ENSMUSG00000021441	Cts6	1600022N02Rik	cathepsin 6	protein-coding	0.015000	0.487562	
mm_52381.1	chr6	113133576	113133776	+	1	NA	NA	NA	28741	NM_173005	72895	Mm.367159	NM_028385	ENSMUSG00000034269	Setd5	2900045N06Rik|C330007C20|C85544|mKIAA1757	SET domain containing 5	protein-coding	0.000000	0.422886	
mm_164563.1	chr17	17871046	17871246	+	1	NA	NA	NA	12793	NM_013521	14293	Mm.56951	NM_013521	ENSMUSG00000045551	Fpr1	FPR|LXA4R|fMLF-R	formyl peptide receptor 1	protein-coding	0.005000	0.407960	
mm_169359.1	chr14	27508342	27508542	-	1	NA	NA	NA	18	NM_177111	320234	Mm.247767	NM_177111	ENSMUSG00000046753	Ccdc66	E230015L20Rik	coiled-coil domain containing 66	protein-coding	0.100000	0.686567	
mm_65643.1	chr7	27979068	27979268	-	1	NA	NA	NA	-11	NM_001081021	338354	Mm.389873	NM_001081021	ENSMUSG00000063047	Zfp780b	B230208L21Rik	zinc finger protein 780B	protein-coding	0.075000	0.552239	
mm_139327.1	chr17	48931707	48931907	+	1	NA	NA	NA	-775	NM_027452	70530	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0.115000	0.686567	
mm_16454.1	chr2	180581109	180581309	+	1	NA	NA	NA	-95	NM_028479	73247	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	0.005000	0.552239	
mm_162799.1	chr10	76798759	76798959	-	1	NA	NA	NA	-72815	NM_009933	12833	Mm.2509	NM_009933	ENSMUSG00000001119	Col6a1	AI747156|Col6a-1	collagen, type VI, alpha 1	protein-coding	0.025000	0.587065	
mm_26158.1	chr3	138217721	138217921	+	1	NA	NA	NA	48	NM_009626	11529	Mm.8473	NM_009626	ENSMUSG00000055301	Adh7	AI325182|Adh-3|Adh-3e|Adh-3t|Adh3|Adh3-e|Adh3-t|Adh4|Adt-1	alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide	protein-coding	0.030000	0.502488	
mm_57646.1	chr6	128437617	128437817	-	1	NA	NA	NA	914	NM_010219	14228	Mm.12758	NM_010219	ENSMUSG00000030357	Fkbp4	59kDa|AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59	FK506 binding protein 4	protein-coding	0.050000	0.606965	
mm_88155.1	chr10	69572889	69573089	+	1	NA	NA	NA	39281	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.010000	0.427861	
mm_78670.1	chr9	40770680	40770880	+	1	NA	NA	NA	-30493	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.010000	0.467662	
mm_166179.1	chr5	30960135	30960335	-	1	NA	NA	NA	92	NM_001294302	50907	Mm.272414	NM_016703	ENSMUSG00000045302	Preb	C85705	prolactin regulatory element binding	protein-coding	0.105000	0.656716	
mm_67077.1	chr7	68264489	68264689	-	1	NA	NA	NA	-356	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.020000	0.437811	
mm_27680.1	chr3	65958046	65958246	-	1	NA	NA	NA	79	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.180000	0.756219	
mm_91229.1	chr10	22299707	22299907	-	1	NA	NA	NA	-6913	NR_015465	606736	Mm.387042	NR_015465	ENSMUSG00000097352	C920009B18Rik	-	RIKEN cDNA C920009B18 gene	ncRNA	0.000000	0.402985	
mm_66304.1	chr7	38271135	38271335	-	1	NA	NA	NA	113	NM_025390	66161	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0.050000	0.507463	
mm_111730.1	chr12	103773505	103773705	-	1	NA	NA	NA	28	NM_009246	20703	Mm.439695	NM_009246	ENSMUSG00000071177	Serpina1d	AI118301|Dom4|PI4|Spi1-4	serine (or cysteine) peptidase inhibitor, clade A, member 1D	protein-coding	0.010000	0.492537	
mm_103669.1	chr11	79112545	79112745	-	1	NA	NA	NA	33709	NM_013571	16706	Mm.4745	NM_013571	ENSMUSG00000018334	Ksr1	AW492498|B-KSR1|D11Bhm183e|D11Bhm184e|Ksr|RSU2|hb	kinase suppressor of ras 1	protein-coding	0.035000	0.651741	
mm_34360.1	chr4	144892610	144892810	+	1	NA	NA	NA	-117	NM_001172424	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.070000	0.616915	
mm_68732.1	chr7	120751274	120751474	-	1	NA	NA	NA	11817	NM_177697	233813	Mm.389939	NM_177697	ENSMUSG00000030889	Vwa3a	E030013G06Rik	von Willebrand factor A domain containing 3A	protein-coding	0.000000	0.487562	-34(GGTTATAAAAGT,-,0.00)
mm_165203.1	chr2	32978045	32978245	+	1	NA	NA	NA	3911	NM_019488	56017	Mm.305754	NM_019488	ENSMUSG00000026791	Slc2a8	D2Ertd44e|GLUT8|GlutX1	solute carrier family 2, (facilitated glucose transporter), member 8	protein-coding	0.000000	0.467662	
mm_20044.1	chr2	120154392	120154592	-	1	NA	NA	NA	83	NM_133838	98878	Mm.132226	NM_133838	ENSMUSG00000027293	Ehd4	2210022F10Rik|AI197390|AI846352|AV006278|Past2	EH-domain containing 4	protein-coding	0.140000	0.731343	
mm_162932.1	chr10	123582462	123582662	+	1	NA	NA	NA	318486	NM_001252387	268354	Mm.51939	NM_182807	ENSMUSG00000044071	Fam19a2	6330575M02|FAM19A2 TAFA-2|TAFA2|Tafa-2	family with sequence similarity 19, member A2	protein-coding	0.015000	0.457711	
mm_8119.1	chr1	136040811	136041011	-	1	NA	NA	NA	-9893	NM_001270609	226439	Mm.491831	NM_001270609	ENSMUSG00000097918	Ascl5	Ascl5-ps|Gm197|bHLHa47	achaete-scute family bHLH transcription factor 5	protein-coding	0.020000	0.542289	
mm_124516.1	chr14	121963321	121963521	-	1	NA	NA	NA	1772	NM_183031	321019	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.025000	0.497512	
mm_144187.1	chr18	7869046	7869246	+	1	NA	NA	NA	-51	NM_001146298	225131	Mm.204524	NM_153085	ENSMUSG00000024283	Wac	1110067P07Rik|A230035H12Rik|AI256735|AI256776|Wwp4	WW domain containing adaptor with coiled-coil	protein-coding	0.125000	0.711443	
mm_75265.1	chr8	40634691	40634891	-	1	NA	NA	NA	1	NM_001040699	54384	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.150000	0.791045	
mm_52025.1	chr6	94722075	94722275	+	1	NA	NA	NA	-22030	NM_008377	16206	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.015000	0.432836	-36(GTTTATATACTC,+,0.00)
mm_109231.1	chr12	108836947	108837147	+	1	NA	NA	NA	74	NR_029773	723946		NR_029773	ENSMUSG00000065429	Mir345	Mirn345|mir-345|mmu-mir-345	microRNA 345	ncRNA	0.010000	0.542289	
mm_74151.1	chr8	123373712	123373912	+	1	NA	NA	NA	101	NM_001286363	66855	Mm.178818	NM_025804	ENSMUSG00000001472	Tcf25	1100001J13Rik|1810041K11Rik|D8Ertd325e|Nulp1|mKIAA1049	transcription factor 25 (basic helix-loop-helix)	protein-coding	0.115000	0.686567	
mm_116630.1	chr13	48967980	48968180	-	1	NA	NA	NA	-32	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.175000	0.835821	
mm_59820.1	chr7	29238345	29238545	+	1	NA	NA	NA	122	NM_029887	77254	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	0.135000	0.696517	
mm_15840.1	chr2	164715227	164715427	+	1	NA	NA	NA	22	NM_001040055	641368	Mm.422380	NM_001040055	ENSMUSG00000074593	Spint5	Gm14316|OTTMUSG00000016293	serine protease inhibitor, Kunitz type 5	protein-coding	0.020000	0.502488	
mm_34063.1	chr4	138454266	138454466	+	1	NA	NA	NA	-782	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.080000	0.716418	
mm_133208.1	chr16	74619964	74620164	+	1	NA	NA	NA	-209152	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.025000	0.497512	
mm_158572.1	chrX	150589715	150589915	-	1	NA	NA	NA	-106	NM_008824	18639	Mm.249131	NM_008824	ENSMUSG00000025271	Pfkfb1	PFK/FBPase 1	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1	protein-coding	0.005000	0.417910	
mm_116992.1	chr13	56503695	56503895	-	1	NA	NA	NA	-18677	NM_001346732	213311	Mm.233904	NM_178674	ENSMUSG00000035509	Fbxl21	D630045D17Rik|FBL3B|FBXL3B|Psttm	F-box and leucine-rich repeat protein 21	protein-coding	0.015000	0.462687	
mm_168696.1	chr11	97664052	97664252	+	1	NA	NA	NA	740	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.055000	0.636816	
mm_125886.1	chr15	75862240	75862440	+	1	NA	NA	NA	1	NM_026960	69146	Mm.27385	NM_026960	ENSMUSG00000022575	Gsdmd	1810036L03Rik|AW558049|DF5L|Dfna5l|Gsdmdc1|M2-4	gasdermin D	protein-coding	0.080000	0.641791	
mm_135529.1	chr16	49698915	49699115	-	1	NA	NA	NA	-279	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.055000	0.592040	-34(GCGCCTTAAAGG,-,0.00),-33(CGCCTTAAAGGC,-,0.00),-32(GCCTTAAAGGCG,+,0.00)
mm_131316.1	chr16	11656050	11656250	+	1	NA	NA	NA	-123552	NR_126430	73761	Mm.39183	NR_126430		4833415N18Rik	-	RIKEN cDNA 4833415N18 gene	ncRNA	0.005000	0.457711	
mm_28980.1	chr3	101110665	101110865	-	1	NA	NA	NA	-599	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding	0.040000	0.557214	
mm_82226.1	chr9	3026678	3026878	-	1	NA	NA	NA	11965	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.030000	0.358209	
mm_161127.1	chr12	111627953	111628153	+	1	NA	NA	NA	44285	NM_021273	12709	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.025000	0.427861	
mm_64247.1	chr7	141704215	141704415	+	1	NA	NA	NA	13975	NM_023566	17831	Mm.2041	NM_023566		Muc2	2010015E03Rik|MCM|wnn	mucin 2	protein-coding	0.010000	0.452736	
mm_25042.1	chr3	98291158	98291358	+	1	NA	NA	NA	10827	NM_008256	15360	Mm.289131	NM_008256	ENSMUSG00000027875	Hmgcs2	1300002P16|mHS	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2	protein-coding	0.030000	0.532338	
mm_145136.1	chr18	45268796	45268996	+	1	NA	NA	NA	36	NM_001312905	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.085000	0.631841	
mm_36733.1	chr4	99122374	99122574	-	1	NA	NA	NA	-1559	NM_026082	67299	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0.000000	0.437811	
mm_76760.1	chr8	95576211	95576411	-	1	NA	NA	NA	-704	NM_001310539	70993	Mm.486561	NM_027640	ENSMUSG00000048400	Prss54	4931432M23Rik|Klkbl4	protease, serine 54	protein-coding	0.050000	0.482587	
mm_104607.1	chr11	97187799	97187999	-	1	NA	NA	NA	-7	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.105000	0.726368	
mm_70328.1	chr8	4359645	4359845	+	1	NA	NA	NA	10157	NM_009138	20300	Mm.7275	NM_009138	ENSMUSG00000023235	Ccl25	A130072A22Rik|AI852536|CKb15|Scya25|TECK	chemokine (C-C motif) ligand 25	protein-coding	0.005000	0.437811	
mm_128456.1	chr15	50778263	50778463	-	1	NA	NA	NA	110686	NM_001310481	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	trichorhinophalangeal syndrome I (human)	protein-coding	0.005000	0.323383	
mm_13321.1	chr2	102706322	102706522	+	1	NA	NA	NA	-16	NM_011393	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.000000	0.472637	-33(GCTTTAAAATAC,+,0.00)
mm_170981.1	chr2	71873124	71873324	+	1	NA	NA	NA	0	NM_172665	228026	Mm.34411	NM_172665	ENSMUSG00000006494	Pdk1	B830012B01|D530020C15Rik	pyruvate dehydrogenase kinase, isoenzyme 1	protein-coding	0.115000	0.736318	
mm_127449.1	chr15	101270586	101270786	+	1	NA	NA	NA	3840	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.005000	0.601990	
mm_95293.1	chr11	45991638	45991838	+	1	NA	NA	NA	11428	NM_173384	214105	Mm.66708	NM_173384	ENSMUSG00000040489	Sox30	-	SRY (sex determining region Y)-box 30	protein-coding	0.045000	0.626866	28(GCTTTTCTGGGC,+,0.00)
mm_3337.1	chr1	137965333	137965533	+	1	NA	NA	NA	-1022	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.005000	0.273632	
mm_28869.1	chr3	97702510	97702710	-	1	NA	NA	NA	-12048	NR_106084	102466229		NR_106084	ENSMUSG00000098381	Mir7225	Gm27499|mmu-mir-7225	microRNA 7225	ncRNA	0.030000	0.532338	
mm_110766.1	chr12	70231336	70231536	-	1	NA	NA	NA	3595	NR_045174	414124	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	0.010000	0.507463	
mm_79287.1	chr9	51204755	51204955	+	1	NA	NA	NA	-8835	NM_011136	18985	Mm.897	NM_011136	ENSMUSG00000032053	Pou2af1	BOB.1|Bob-1|Bob1|OBF-1|OBF.1|OCA-B|OCAB	POU domain, class 2, associating factor 1	protein-coding	0.005000	0.407960	-33(CTCTATAAAAAA,-,0.00)
mm_4573.1	chr1	177740778	177740978	+	1	NA	NA	NA	11064	NM_027077	69428	Mm.84467	NM_027077	ENSMUSG00000015962	1700016C15Rik	-	RIKEN cDNA 1700016C15 gene	protein-coding	0.005000	0.427861	
mm_1896.1	chr1	85709295	85709495	+	1	NA	NA	NA	27211	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.005000	0.537313	
mm_45696.1	chr5	82124567	82124767	-	1	NA	NA	NA	46	NR_138557	67327	Mm.87058	NR_138557		1700031L13Rik	-	RIKEN cDNA 1700031L13 gene	ncRNA	0.005000	0.348259	
mm_23233.1	chr3	50443650	50443850	+	1	NA	NA	NA	-137	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.402985	57(TCTTAAAGAGGG,+,0.00)
mm_126625.1	chr15	83316493	83316693	+	1	NA	NA	NA	33654	NM_025445	66251	Mm.258910	NM_025445	ENSMUSG00000054277	Arfgap3	0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1	ADP-ribosylation factor GTPase activating protein 3	protein-coding	0.010000	0.527363	
mm_123699.1	chr14	69714722	69714922	-	1	NA	NA	NA	-13	NM_001301651	71843	Mm.27738	NM_001146012	ENSMUSG00000034194	R3hcc1	1700020M16Rik|AA407796	R3H domain and coiled-coil containing 1	protein-coding	0.030000	0.497512	-76(CCTTTAAGAAGG,+,0.00)
mm_155968.1	chrX	106085105	106085305	+	1	NA	NA	NA	57981	NM_009726	11977	Mm.254297	NM_009726	ENSMUSG00000033792	Atp7a	MNK	ATPase, Cu++ transporting, alpha polypeptide	protein-coding	0.010000	0.457711	
mm_19710.1	chr2	103819247	103819447	-	1	NA	NA	NA	-8725	NR_040514	78031	Mm.243867	NR_040514	ENSMUSG00000086687	4930547E08Rik	-	RIKEN cDNA 4930547E08 gene	ncRNA	0.030000	0.427861	
mm_5156.1	chr1	9967710	9967910	-	1	NA	NA	NA	-325	NM_001285425	100039596	Mm.412928	NM_001285425	ENSMUSG00000099032	Tcf24	ENSMUSG00000073738|Gm10567|Gm2330	transcription factor 24	protein-coding	0.090000	0.691542	-33(CCACATAAAAGG,-,0.00)
mm_148869.1	chr19	6497527	6497727	+	1	NA	NA	NA	45443	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.045000	0.671642	
mm_4157.1	chr1	171027867	171028067	+	1	NA	NA	NA	9041	NM_144559	246256	Mm.251254	NM_144559	ENSMUSG00000059089	Fcgr4	4833442P21Rik|CD16-2|FcgRIV|FcgammaRIV|Fcgr3a|Fcrl3	Fc receptor, IgG, low affinity IV	protein-coding	0.020000	0.447761	
mm_16775.1	chr2	9884124	9884324	-	1	NA	NA	NA	2978	NR_024257	381347	Mm.441450	NR_024257		4930412O13Rik	ENSMUSG00000075535|Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.045000	0.537313	
mm_72431.1	chr8	82863725	82863925	+	1	NA	NA	NA	469	NM_177378	330812	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	0.155000	0.741294	
mm_117675.1	chr13	93637703	93637903	-	1	NA	NA	NA	-45	NM_016668	12116	Mm.329582	NM_016668	ENSMUSG00000074768	Bhmt	-	betaine-homocysteine methyltransferase	protein-coding	0.025000	0.502488	
mm_143529.1	chr17	73901948	73902148	-	1	NA	NA	NA	48148	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.005000	0.353234	
mm_117536.1	chr13	83574909	83575109	-	1	NA	NA	NA	1402	NM_001347569	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.020000	0.383085	
mm_107318.1	chr12	31266225	31266425	+	1	NA	NA	NA	1031	NM_008482	16777	Mm.172674	NM_008482	ENSMUSG00000002900	Lamb1	C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1	laminin B1	protein-coding	0.055000	0.572139	
mm_137101.1	chr17	21573741	21573941	+	1	NA	NA	NA	6795	NM_001002008	381066	Mm.441097	NM_001002008	ENSMUSG00000067931	Zfp948	-	zinc finger protein 948	protein-coding	0.000000	0.283582	
mm_147099.1	chr18	35654796	35654996	-	1	NA	NA	NA	303	NM_001270646	381148	Mm.297784	NM_001270646	ENSMUSG00000073600	Prob1	Gm1614	proline rich basic protein 1	protein-coding	0.115000	0.711443	
mm_40832.1	chr5	72914344	72914544	+	1	NA	NA	NA	82	NM_153567	75991	Mm.121285	NM_153567	ENSMUSG00000036087	Slain2	5033405K12Rik|8030444K12Rik|AI596370	SLAIN motif family, member 2	protein-coding	0.125000	0.761194	
mm_149656.1	chr19	18681143	18681343	+	1	NA	NA	NA	10463	NM_026120	67383	Mm.306602	NM_026120	ENSMUSG00000024726	Carnmt1	2410127L17Rik	carnosine N-methyltransferase 1	protein-coding	0.005000	0.283582	
mm_61122.1	chr7	55768126	55768326	+	1	NA	NA	NA	42	NM_178706	233274	Mm.44425	NM_178706	ENSMUSG00000051504	Siglech	6430529G09Rik|Siglec-H	sialic acid binding Ig-like lectin H	protein-coding	0.010000	0.547264	
mm_83554.1	chr9	46242546	46242746	-	1	NA	NA	NA	1802	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.035000	0.537313	
mm_69592.1	chr7	135708147	135708347	-	1	NA	NA	NA	8132	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.000000	0.437811	
mm_90300.1	chr10	125966143	125966343	+	1	NA	NA	NA	24	NM_177152	320398	Mm.275586	NM_177152	ENSMUSG00000020105	Lrig3	9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016	leucine-rich repeats and immunoglobulin-like domains 3	protein-coding	0.155000	0.751244	
mm_36255.1	chr4	63410123	63410323	-	1	NA	NA	NA	-6778	NM_001045514	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.050000	0.611940	
mm_24582.1	chr3	93444723	93444923	+	1	NA	NA	NA	2493	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.070000	0.631841	
mm_105453.1	chr11	104503344	104503544	-	1	NA	NA	NA	47176	NM_001285990	217232	Mm.89845	NM_145436	ENSMUSG00000020687	Cdc27	AI452358|APC3|BC023187	cell division cycle 27	protein-coding	0.005000	0.363184	
mm_50812.1	chr6	54326867	54327067	+	1	NA	NA	NA	-45	NM_030024	78004	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	0.050000	0.601990	
mm_62768.1	chr7	112283550	112283750	+	1	NA	NA	NA	57814	NM_001193305	320878	Mm.52312	NM_177282	ENSMUSG00000038244	Mical2	5330438E18Rik|9530064J02|MICAL-2|mKIAA0750	microtubule associated monooxygenase, calponin and LIM domain containing 2	protein-coding	0.010000	0.338308	
mm_42955.1	chr5	123040979	123041179	+	1	NA	NA	NA	5741	NM_029112	74890	Mm.141383	NM_029112	ENSMUSG00000029477	Morn3	4930438O03Rik	MORN repeat containing 3	protein-coding	0.035000	0.562189	
mm_114994.1	chr13	97579640	97579840	+	1	NA	NA	NA	19740	NR_046157	328314	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.010000	0.308458	
mm_54278.1	chr6	29164914	29165114	-	1	NA	NA	NA	-290	NM_133925	68272	Mm.40802	NM_026650	ENSMUSG00000029701	Rbm28	2810480G15Rik|AI503051	RNA binding motif protein 28	protein-coding	0.020000	0.422886	
mm_117825.1	chr13	98030000	98030200	-	1	NA	NA	NA	176065	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0.015000	0.492537	
mm_19650.1	chr2	102868607	102868807	-	1	NA	NA	NA	32958	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.000000	0.427861	
mm_135428.1	chr16	45382648	45382848	-	1	NA	NA	NA	26305	NM_010818	17470	Mm.245851	NM_010818	ENSMUSG00000022661	Cd200	Mox2|OX2	CD200 antigen	protein-coding	0.005000	0.388060	
mm_171332.1	chr3	98580448	98580648	-	1	NA	NA	NA	-16510	NM_008294	15495	Mm.14309	NM_008294	ENSMUSG00000095143	Hsd3b4	-	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 4	protein-coding	0.030000	0.487562	
mm_73118.1	chr8	94750177	94750377	+	1	NA	NA	NA	4593	NM_009137	20299	Mm.12895	NM_009137	ENSMUSG00000031779	Ccl22	ABCD-1|DCBCK|MDC|Scya22	chemokine (C-C motif) ligand 22	protein-coding	0.000000	0.532338	
mm_172447.1	chr7	3111855	3112055	-	1	NA	NA	NA	-16191	NR_001583	73949	Mm.55687	NR_001583	ENSMUSG00000107956	Speer9-ps1	4930415A14Rik|SPEER-9|Speer9-ps	spermatogenesis associated glutamate (E)-rich protein 9, pseudogene 1	pseudo	0.040000	0.492537	
mm_147940.1	chr18	66153303	66153503	-	1	NA	NA	NA	65930	NR_030467	751558		NR_030467	ENSMUSG00000076147	Mir694	Mirn694|mir-694|mmu-mir-694	microRNA 694	ncRNA	0.010000	0.417910	
mm_9644.1	chr1	177239026	177239226	-	1	NA	NA	NA	9641	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.000000	0.318408	
mm_85193.1	chr9	96719950	96720150	-	1	NA	NA	NA	11625	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.090000	0.681592	
mm_124477.1	chr14	121460341	121460541	-	1	NA	NA	NA	44813	NM_053079	56643	Mm.155618	NM_053079	ENSMUSG00000025557	Slc15a1	D630032F02|PECT1|PEPT1	solute carrier family 15 (oligopeptide transporter), member 1	protein-coding	0.000000	0.353234	
mm_132033.1	chr16	27389827	27390027	+	1	NA	NA	NA	971	NM_001289436	67501	Mm.258985	NM_026202	ENSMUSG00000038127	Ccdc50	C3orf6	coiled-coil domain containing 50	protein-coding	0.010000	0.482587	-54(CTCTCTTAAAGC,-,0.00),-53(TCTCTTAAAGCC,+,0.00)
mm_146747.1	chr18	16274897	16275097	-	1	NA	NA	NA	534249	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.020000	0.398010	
mm_27902.1	chr3	79481432	79481632	-	1	NA	NA	NA	86147	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.025000	0.547264	
mm_128352.1	chr15	39943826	39944026	-	1	NA	NA	NA	68	NM_001347036	239393	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0.170000	0.800995	
mm_10701.1	chr2	22773850	22774050	+	1	NA	NA	NA	-377	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.015000	0.467662	-69(GGGCAGAAAAGG,-,0.00)
mm_90055.1	chr10	116177592	116177792	+	1	NA	NA	NA	341	NM_001161840	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	0.040000	0.447761	
mm_86700.1	chr10	18525846	18526046	+	1	NA	NA	NA	20130	NM_019487	56016	Mm.35551	NM_019487	ENSMUSG00000019853	Hebp2	SOUL	heme binding protein 2	protein-coding	0.020000	0.611940	
mm_21303.1	chr2	157058665	157058865	-	1	NA	NA	NA	20500	NM_001164663	320706	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.035000	0.592040	
mm_55481.1	chr6	68980854	68981054	-	1	NA	NA	NA	346220	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.015000	0.323383	
mm_78.1	chr1	6730043	6730243	+	1	NA	NA	NA	92	NR_045188	240690	Mm.234612	NM_173868	ENSMUSG00000033740	St18	AV348974|Myt3|NZF-3|Nzf3|mKIAA0535	suppression of tumorigenicity 18	protein-coding	0.015000	0.447761	
mm_57590.1	chr6	127769024	127769224	-	1	NA	NA	NA	35	NM_201371	381813	Mm.39750	NM_201371	ENSMUSG00000030350	Prmt8	Hrmt1l3|Hrmt1l4	protein arginine N-methyltransferase 8	protein-coding	0.130000	0.771144	
mm_118443.1	chr14	8118080	8118280	+	1	NA	NA	NA	19967	NM_178279	218699	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|MONaKA	PX domain containing serine/threonine kinase	protein-coding	0.005000	0.477612	
mm_57923.1	chr6	134248710	134248910	-	1	NA	NA	NA	-147519	NM_025778	66813	Mm.474472	NM_025778	ENSMUSG00000030200	Bcl2l14	4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg	BCL2-like 14 (apoptosis facilitator)	protein-coding	0.080000	0.661692	
mm_7402.1	chr1	119053298	119053498	-	1	NA	NA	NA	221	NM_001081125	14633	Mm.273292	NM_001081125	ENSMUSG00000048402	Gli2	-	GLI-Kruppel family member GLI2	protein-coding	0.060000	0.701493	
mm_140298.1	chr17	85620922	85621122	+	1	NA	NA	NA	188	NM_011381	20473	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0.045000	0.601990	
mm_113818.1	chr13	46735956	46736156	+	1	NA	NA	NA	-8207	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.035000	0.512438	-34(GGCTATAAAATG,-,0.00)
mm_28948.1	chr3	100162289	100162489	-	1	NA	NA	NA	14	NM_175552	269470	Mm.24591	NM_175552	ENSMUSG00000033285	Wdr3	AW546279|D030020G18Rik	WD repeat domain 3	protein-coding	0.095000	0.636816	58(GGCTCTTTAGGG,-,0.00)
mm_62618.1	chr7	107209376	107209576	+	1	NA	NA	NA	31	NM_029660	76572	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	0.120000	0.666667	
mm_51371.1	chr6	72898606	72898806	+	1	NA	NA	NA	586	NM_001347231	74287	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0.035000	0.482587	
mm_99123.1	chr11	100204656	100204856	+	1	NA	NA	NA	1274	NM_001313957	16664	Mm.439898	NM_016958	ENSMUSG00000045545	Krt14	AI626930|CK-14|K14|Krt-1.14|Krt1-14	keratin 14	protein-coding	0.045000	0.572139	
mm_139189.1	chr17	47597419	47597619	+	1	NA	NA	NA	4052	NM_007632	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.025000	0.582090	
mm_59245.1	chr7	24784483	24784683	+	1	NA	NA	NA	7379	NM_007675	26366	Mm.30300	NM_007675	ENSMUSG00000054169	Ceacam10	Bgp3|Cea10	carcinoembryonic antigen-related cell adhesion molecule 10	protein-coding	0.020000	0.472637	
mm_33751.1	chr4	134314999	134315199	+	1	NA	NA	NA	-21	NM_001039048	433766	Mm.331961	NM_001039048	ENSMUSG00000028834	Trim63	MuRF1|RF1|Rnf28	tripartite motif-containing 63	protein-coding	0.025000	0.587065	
mm_145234.1	chr18	50134926	50135126	+	1	NA	NA	NA	6825	NM_008292	15488	Mm.277857	NM_008292	ENSMUSG00000024507	Hsd17b4	17-beta-HSD|17[b]-HSD|DBP|MFE-2|MFP2|MPF-2|Mfp-2|perMFE-2	hydroxysteroid (17-beta) dehydrogenase 4	protein-coding	0.010000	0.527363	
mm_856.1	chr1	52126437	52126637	+	1	NA	NA	NA	6915	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.010000	0.427861	
mm_49614.1	chr6	30747347	30747547	+	1	NA	NA	NA	6148	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.328358	
mm_3499.1	chr1	150106861	150107061	+	1	NA	NA	NA	6930	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.030000	0.487562	
mm_107835.1	chr12	69295887	69296087	+	1	NA	NA	NA	-694	NM_027117	69554	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0.010000	0.537313	
mm_142416.1	chr17	45567921	45568121	-	1	NA	NA	NA	3869	NM_028662	73836	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.025000	0.577114	
mm_107365.1	chr12	32848576	32848776	+	1	NA	NA	NA	24560	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.015000	0.412935	
mm_105733.1	chr11	109246869	109247069	-	1	NA	NA	NA	51212	NM_001165934	19739	Mm.38548	NM_011268	ENSMUSG00000020599	Rgs9	RGS9-1|Rgs9-2	regulator of G-protein signaling 9	protein-coding	0.005000	0.467662	
mm_5538.1	chr1	38129549	38129749	-	1	NA	NA	NA	13	NM_019570	56210	Mm.389103	NM_019570	ENSMUSG00000026082	Rev1	1110027I23Rik|AU022044|Rev1l	REV1, DNA directed polymerase	protein-coding	0.155000	0.815920	
mm_94193.1	chr10	130280130	130280330	-	1	NA	NA	NA	24	NM_001329490	11923	Mm.10695	NM_007501	ENSMUSG00000048015	Neurod4	AI846749|ATH-3|Atoh3|MATH-3|Math3|bHLHa4	neurogenic differentiation 4	protein-coding	0.030000	0.557214	
mm_152198.1	chr19	7583141	7583341	-	1	NA	NA	NA	23935	NM_019516	56072	Mm.298242	NM_019516	ENSMUSG00000024972	Lgals12	AW987437|Grip1	lectin, galactose binding, soluble 12	protein-coding	0.030000	0.537313	
mm_139437.1	chr17	53769722	53769922	+	1	NA	NA	NA	53313	NR_073205	211496	Mm.251553	NM_177599	ENSMUSG00000062036	4932415M13Rik	-	RIKEN cDNA 4932415M13 gene	ncRNA	0.010000	0.487562	
mm_14541.1	chr2	132816041	132816241	+	1	NA	NA	NA	0	NM_025676	66634	Mm.157070	NM_025676	ENSMUSG00000027353	Mcm8	5730432L01Rik	minichromosome maintenance 8 homologous recombination repair factor	protein-coding	0.095000	0.592040	
mm_134740.1	chr16	23028993	23029193	-	1	NA	NA	NA	8	NM_201375	385643	Mm.440414	NM_201375	ENSMUSG00000060459	Kng2	-	kininogen 2	protein-coding	0.000000	0.502488	
mm_92111.1	chr10	63057381	63057581	-	1	NA	NA	NA	-4136	NM_026701	68371	Mm.261389	NM_026701	ENSMUSG00000020072	Pbld1	0610038K03Rik|Mawbp|Pbld	phenazine biosynthesis-like protein domain containing 1	protein-coding	0.020000	0.587065	
mm_124381.1	chr14	108841933	108842133	-	1	NA	NA	NA	72206	NM_199065	76965	Mm.257268	NM_199065	ENSMUSG00000075478	Slitrk1	3200001I04Rik	SLIT and NTRK-like family, member 1	protein-coding	0.015000	0.313433	
mm_83048.1	chr9	37544472	37544672	-	1	NA	NA	NA	5317	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.030000	0.562189	
mm_16185.1	chr2	172977529	172977729	+	1	NA	NA	NA	-2213	NM_012046	26972	Mm.23495	NM_012046	ENSMUSG00000005883	Spo11	AI449549|Spo11a|Spo11b	SPO11 meiotic protein covalently bound to DSB	protein-coding	0.025000	0.592040	
mm_73148.1	chr8	94992764	94992964	+	1	NA	NA	NA	8465	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.015000	0.631841	
mm_144136.1	chr18	4993683	4993883	+	1	NA	NA	NA	-52806	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.005000	0.532338	
mm_51186.1	chr6	70903612	70903812	+	1	NA	NA	NA	15210	NM_028825	74221	Mm.273326	NM_028825	ENSMUSG00000051896	Tex37	1700011F03Rik	testis expressed 37	protein-coding	0.015000	0.383085	
mm_87317.1	chr10	42827779	42827979	+	1	NA	NA	NA	-32633	NM_172938	268297	Mm.98731	NM_172938	ENSMUSG00000044770	Scml4	9330161D17|mFLJ00197	sex comb on midleg-like 4 (Drosophila)	protein-coding	0.010000	0.422886	-33(GTCTTTAAAGTG,+,0.00),67(TCCTATATGGGC,+,0.00)
mm_96007.1	chr11	59541560	59541760	+	1	NA	NA	NA	-1026	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.005000	0.378109	31(TCTTTTAGACTC,+,0.00)
mm_157882.1	chrX	75843034	75843234	-	1	NA	NA	NA	-71	NM_001346520	102866	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	0.015000	0.427861	-67(TGGTTTTAAAAG,-,0.00),-65(GTTTTAAAAGTG,+,0.00)
mm_56973.1	chr6	120242613	120242813	-	1	NA	NA	NA	48890	NM_001347432	29862	Mm.103668	NM_016718	ENSMUSG00000041377	Ninj2	-	ninjurin 2	protein-coding	0.020000	0.462687	-32(GCCTTTTTAAAA,-,0.00)
mm_85761.1	chr9	108654618	108654818	-	1	NA	NA	NA	-5338	NM_011790	23807	Mm.290447	NM_011790	ENSMUSG00000064145	Arih2	AI843547|ARI2|TRIAD1|UIP48	ariadne RBR E3 ubiquitin protein ligase 2	protein-coding	0.010000	0.502488	
mm_172634.1	chr8	20567701	20567901	+	1	NA	NA	NA	-47126	NM_001270553	100861668	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.015000	0.472637	
mm_55749.1	chr6	78372114	78372314	-	1	NA	NA	NA	1329	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.020000	0.477612	
mm_20785.1	chr2	143989583	143989783	-	1	NA	NA	NA	21580	NM_133626	81910	Mm.13705	NM_024281	ENSMUSG00000027422	Rrbp1	1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180	ribosome binding protein 1	protein-coding	0.000000	0.572139	
mm_4075.1	chr1	166254026	166254226	+	1	NA	NA	NA	-13	NM_001164528	100039795	Mm.101743	NM_001164528	ENSMUSG00000040612	Ildr2	2810478N18Rik|3110063L10Rik|AI852300|D1Ertd471e|Dbsm1|ENSMUSG00000040612|Ll	immunoglobulin-like domain containing receptor 2	protein-coding	0.155000	0.751244	
mm_105672.1	chr11	107469473	107469673	-	1	NA	NA	NA	1147	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.045000	0.577114	-25(GAGTATAAGAGC,-,0.00)
mm_29168.1	chr3	106485844	106486044	-	1	NA	NA	NA	-31	NR_033207	69206	Mm.14816	NM_001033146	ENSMUSG00000091575	2010016I18Rik	-	RIKEN cDNA 2010016I18 gene	ncRNA	0.005000	0.527363	
mm_11425.1	chr2	31950169	31950369	+	1	NA	NA	NA	-34	NM_145144	108897	Mm.24838	NM_145144	ENSMUSG00000001864	Aif1l	2810003C17Rik|AI043124|C87647|Iba2	allograft inflammatory factor 1-like	protein-coding	0.110000	0.726368	
mm_80127.1	chr9	70580681	70580881	+	1	NA	NA	NA	37911	NM_025690	66660	Mm.22379	NM_025690	ENSMUSG00000032212	Sltm	5730455C01Rik|5730555F13Rik|9130215G10Rik|Met	SAFB-like, transcription modulator	protein-coding	0.005000	0.333333	
mm_140329.1	chr17	86754006	86754206	+	1	NA	NA	NA	242	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.055000	0.651741	
mm_27197.1	chr3	35662194	35662394	-	1	NA	NA	NA	3869	NR_040748	625963	Mm.251506	NR_040748	ENSMUSG00000105662	Gm6639	-	predicted gene 6639	ncRNA	0.010000	0.482587	
mm_33463.1	chr4	130793651	130793851	+	1	NA	NA	NA	1214	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.005000	0.457711	
mm_60939.1	chr7	46877831	46878031	+	1	NA	NA	NA	16668	NM_013580	16833	Mm.16563	NM_013580	ENSMUSG00000030851	Ldhc	LDH-C4|Ldh-3|Ldh-x|Ldh3|Ldhc4	lactate dehydrogenase C	protein-coding	0.025000	0.427861	
mm_113643.1	chr13	42301173	42301373	+	1	NA	NA	NA	-203	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.020000	0.487562	
mm_35816.1	chr4	46991596	46991796	-	1	NA	NA	NA	18	NM_001081141	242425	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	0.165000	0.756219	
mm_166052.1	chr4	131921592	131921792	+	1	NA	NA	NA	-79	NM_001201367	623230	Mm.421179	NM_001201367	ENSMUSG00000070720	Tmem200b	EG623230	transmembrane protein 200B	protein-coding	0.135000	0.766169	
mm_74232.1	chr8	124274603	124274803	+	1	NA	NA	NA	43309	NM_139272	108148	Mm.33808	NM_139272	ENSMUSG00000089704	Galnt2	AI480629	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	protein-coding	0.020000	0.487562	
mm_56052.1	chr6	86754805	86755005	-	1	NA	NA	NA	20209	NM_001331120	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.030000	0.517413	
mm_119681.1	chr14	53078402	53078602	+	1	NA	NA	NA	-582807	NM_001170918	57269	Mm.88822	NM_020512	ENSMUSG00000059887	Olfr1507	MOR244-1|Mor28|Or28	olfactory receptor 1507	protein-coding	0.005000	0.492537	
mm_116899.1	chr13	55413377	55413577	-	1	NA	NA	NA	1755	NM_029303	75477	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	0.025000	0.587065	
mm_7654.1	chr1	128328219	128328419	-	1	NA	NA	NA	-1	NM_001081078	226413	Mm.26930	NM_001081078	ENSMUSG00000026354	Lct	Gm100|LAC|LPH|Lphl	lactase	protein-coding	0.005000	0.457711	-33(GCTCATAAAGTC,+,0.00)
mm_94685.1	chr11	19720116	19720316	+	1	NA	NA	NA	-204226	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related, EVH1 domain containing 2	protein-coding	0.020000	0.383085	
mm_112874.1	chr13	20853783	20853983	+	1	NA	NA	NA	59770	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.353234	
mm_74192.1	chr8	123738336	123738536	+	1	NA	NA	NA	4478	NR_040702	234863	Mm.246601	NR_040702	ENSMUSG00000110599	6030466F02Rik	-	RIKEN cDNA 6030466F02 gene	ncRNA	0.005000	0.442786	-55(GTCCTGAAAAGC,-,0.00)
mm_22058.1	chr2	168590244	168590444	-	1	NA	NA	NA	21	NM_001291178	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.115000	0.761194	
mm_82734.1	chr9	25251891	25252091	-	1	NA	NA	NA	-448	NM_009859	235072	Mm.270259	NM_009859	ENSMUSG00000001833	Sept7	Cdc10|E430034N22	septin 7	protein-coding	0.065000	0.621891	
mm_161749.1	chr17	34517265	34517465	-	1	NA	NA	NA	-13	NM_030747	624681	Mm.471592	NM_030747	ENSMUSG00000092618	Btnl6	EG624681|Gm6519|NG13	butyrophilin-like 6	protein-coding	0.010000	0.512438	
mm_94603.1	chr11	14161961	14162161	+	1	NA	NA	NA	16980	NR_131011	75280	Mm.108492	NR_131011	ENSMUSG00000085452	4930554G24Rik	-	RIKEN cDNA 4930554G24 gene	ncRNA	0.010000	0.383085	
mm_171862.1	chr5	22563707	22563907	+	1	NA	NA	NA	13394	NR_102315	320719	Mm.459265	NR_102315	ENSMUSG00000097207	6030443J06Rik	1700030G06Rik	RIKEN cDNA 6030443J06 gene	ncRNA	0.015000	0.447761	
mm_118179.1	chr13	107021650	107021850	-	1	NA	NA	NA	364	NM_001145779	16563	Mm.355686	NM_008442	ENSMUSG00000021693	Kif2a	C530030B14Rik|Kif2|Kns2|M-kinesin	kinesin family member 2A	protein-coding	0.090000	0.681592	
mm_85244.1	chr9	99035562	99035762	-	1	NA	NA	NA	28	NM_001080776	382097	Mm.293727	NM_001080776	ENSMUSG00000044860	Gm1123	AV052824|CLSP	predicted gene 1123	protein-coding	0.020000	0.601990	
mm_34298.1	chr4	141664145	141664345	+	1	NA	NA	NA	-130	NM_001033150	69582	Mm.33220	NM_001033150	ENSMUSG00000028917	Plekhm2	2310034J19Rik|AI854247|mKIAA0842	pleckstrin homology domain containing, family M (with RUN domain) member 2	protein-coding	0.095000	0.706468	
mm_167388.1	chr8	94857443	94857643	+	1	NA	NA	NA	93	NM_009090	20021	Mm.292492	NM_009090	ENSMUSG00000031783	Polr2c	33kDa|RPB3|Rpo2-3|mRBP31	polymerase (RNA) II (DNA directed) polypeptide C	protein-coding	0.140000	0.671642	
mm_69016.1	chr7	126704797	126704997	-	1	NA	NA	NA	-81	NM_009898	12721	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.060000	0.611940	
mm_171525.1	chr4	146610908	146611108	+	1	NA	NA	NA	-64135	NR_045468	67524	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	0.040000	0.517413	
mm_75194.1	chr8	38661460	38661660	-	1	NA	NA	NA	-52	NM_145841	244431	Mm.210388	NM_145841	ENSMUSG00000039539	Sgcz	C230085N17Rik	sarcoglycan zeta	protein-coding	0.015000	0.487562	-72(TCTTTAAGACCC,+,0.00)
mm_9066.1	chr1	167689305	167689505	-	1	NA	NA	NA	-153	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding	0.030000	0.611940	
mm_8349.1	chr1	150203104	150203304	-	1	NA	NA	NA	-38256	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.010000	0.393035	
mm_118945.1	chr14	27337659	27337859	+	1	NA	NA	NA	1722	NM_001289687	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.005000	0.378109	
mm_155792.1	chrX	98149590	98149790	+	1	NA	NA	NA	933	NM_013476	11835	Mm.39005	NM_013476	ENSMUSG00000046532	Ar	AW320017|Tfm	androgen receptor	protein-coding	0.020000	0.552239	
mm_113471.1	chr13	36475017	36475217	+	1	NA	NA	NA	259360	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.005000	0.422886	
mm_35603.1	chr4	43040199	43040399	-	1	NA	NA	NA	2	NM_001253353	230088	Mm.260162	NM_172691	ENSMUSG00000036002	Fam214b	B230312A22Rik	family with sequence similarity 214, member B	protein-coding	0.075000	0.706468	
mm_99616.1	chr11	104607906	104608106	+	1	NA	NA	NA	6	NM_016780	16416	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding	0.115000	0.736318	
mm_108673.1	chr12	86678387	86678587	+	1	NA	NA	NA	-213	NM_177354	238328	Mm.216101	NM_177354	ENSMUSG00000021256	Vash1	AI834978|D930046M13Rik|G630009D10Rik	vasohibin 1	protein-coding	0.055000	0.517413	62(CGCCCTAAAAAA,-,0.00)
mm_138006.1	chr17	33824527	33824727	+	1	NA	NA	NA	-18	NR_103514	66416	Mm.29513	NM_023202	ENSMUSG00000041881	Ndufa7	14.5kDa|2400007M02Rik|CI-B14.5a	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (B14.5a)	protein-coding	0.115000	0.616915	
mm_54468.1	chr6	34910267	34910467	-	1	NA	NA	NA	464	NM_001013366	101240	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.025000	0.542289	-31(CACTTTAAGAGC,-,0.00),-30(ACTTTAAGAGCC,+,0.00)
mm_171535.1	chr4	146909384	146909584	-	1	NA	NA	NA	-112366	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.025000	0.557214	
mm_122636.1	chr14	51146666	51146866	-	1	NA	NA	NA	1	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.010000	0.393035	-32(CCTTTTAAACTC,+,0.00)
mm_44852.1	chr5	34232474	34232674	-	1	NA	NA	NA	-44864	NM_010753	17122	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.005000	0.497512	
mm_28500.1	chr3	92484588	92484788	-	1	NA	NA	NA	1193	NM_009264	20753	Mm.331191	NM_009264	ENSMUSG00000050359	Sprr1a	AI528815|SPR1a|mSPRR1A	small proline-rich protein 1A	protein-coding	0.000000	0.502488	
mm_157533.1	chrX	51019960	51020160	-	1	NA	NA	NA	-2042	NM_172413	72065	Mm.43152	NM_172413	ENSMUSG00000050029	Rap2c	2010200P20Rik|AI194294|AL022976	RAP2C, member of RAS oncogene family	protein-coding	0.005000	0.547264	
mm_56093.1	chr6	87378156	87378356	-	1	NA	NA	NA	4891	NM_025467	66284	Mm.46446	NM_025467	ENSMUSG00000030049	Gkn2	1810036H07Rik|Bricd1b	gastrokine 2	protein-coding	0.015000	0.552239	
mm_13988.1	chr2	121718407	121718607	+	1	NA	NA	NA	88550	NM_172673	228564	Mm.121514	NM_172673	ENSMUSG00000027238	Frmd5	1500032A09Rik|5830442F04|A930004K21Rik|R75430	FERM domain containing 5	protein-coding	0.020000	0.462687	
mm_44249.1	chr5	5380039	5380239	-	1	NA	NA	NA	112	NM_011074	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.135000	0.671642	
mm_116633.1	chr13	48968344	48968544	-	1	NA	NA	NA	332	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.160000	0.771144	
mm_153299.1	chr19	37955826	37956026	-	1	NA	NA	NA	87651	NM_001099634	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.010000	0.383085	
mm_166937.1	chr7	36832668	36832868	+	1	NA	NA	NA	134650	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.010000	0.412935	
mm_124466.1	chr14	121287910	121288110	-	1	NA	NA	NA	91220	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.005000	0.452736	-75(GACTTTATATGC,-,0.00)
mm_147272.1	chr18	38929306	38929506	-	1	NA	NA	NA	-10707	NM_010197	14164	Mm.241282	NM_010197	ENSMUSG00000036585	Fgf1	Dffrx|Fam|Fgf-1|Fgfa	fibroblast growth factor 1	protein-coding	0.000000	0.562189	
mm_8357.1	chr1	150454310	150454510	-	1	NA	NA	NA	11755	NM_021400	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.000000	0.422886	
mm_121889.1	chr14	21741392	21741592	-	1	NA	NA	NA	1387	NM_013849	27389	Mm.390674	NM_013849	ENSMUSG00000021768	Dusp13	DUSP13A|DUSP13B|Gm1203|LMW-DSP6|MDSP|TMDP|TS-DSP6	dual specificity phosphatase 13	protein-coding	0.005000	0.567164	
mm_37349.1	chr4	119977760	119977960	-	1	NA	NA	NA	163182	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.015000	0.547264	
mm_68420.1	chr7	109723775	109723975	-	1	NA	NA	NA	-104	NM_001040700	57355	Mm.358682	NM_020609	ENSMUSG00000031022	BC051019	AA571491|D7H11orf16|ICRFP703B1614Q5.5	cDNA sequence BC051019	protein-coding	0.005000	0.527363	
mm_59597.1	chr7	28139656	28139856	+	1	NA	NA	NA	10290	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.030000	0.636816	
mm_13018.1	chr2	90987508	90987708	+	1	NA	NA	NA	47211	NM_017368	13046	Mm.29495	NM_017368	ENSMUSG00000005506	Celf1	1600010O03Rik|AA407467|Brunol2|CUG-BP|CUG-BP1|CUGBP|Cugbp1|D2Wsu101e|HNAB50|NAB50	CUGBP, Elav-like family member 1	protein-coding	0.010000	0.517413	
mm_9829.1	chr1	182517522	182517722	-	1	NA	NA	NA	-139	NM_009794	12334	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.125000	0.736318	
mm_152965.1	chr19	29367202	29367402	-	1	NA	NA	NA	-136	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.045000	0.492537	
mm_50207.1	chr6	42249262	42249462	+	1	NA	NA	NA	3427	NM_029555	76263	Mm.267014	NM_029555	ENSMUSG00000029864	Gstk1	0610025I19Rik|AW260476|DsbA-L	glutathione S-transferase kappa 1	protein-coding	0.015000	0.512438	
mm_125394.1	chr15	41447205	41447405	+	1	NA	NA	NA	-177	NM_001130166	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.105000	0.681592	
mm_168460.1	chr1	143732711	143732911	+	1	NA	NA	NA	-6538	NM_001038593	69367	Mm.272727	NM_023505	ENSMUSG00000018196	Glrx2	1700010P22Rik|AI645710|Grx2	glutaredoxin 2 (thioltransferase)	protein-coding	0.025000	0.522388	
mm_139120.1	chr17	47436553	47436753	+	1	NA	NA	NA	14	NM_145489	224833	Mm.218444	NM_145489	ENSMUSG00000034382	AI661453	-	expressed sequence AI661453	protein-coding	0.115000	0.751244	
mm_18549.1	chr2	65023092	65023292	-	1	NA	NA	NA	-426	NM_016719	50915	Mm.214554	NM_016719	ENSMUSG00000026888	Grb14	AI505286	growth factor receptor bound protein 14	protein-coding	0.030000	0.592040	
mm_9416.1	chr1	172326122	172326322	-	1	NA	NA	NA	3041	NM_008429	16524	Mm.261168	NM_008429	ENSMUSG00000038026	Kcnj9	1700085N21Rik|Girk3|Kir3.3|mbGIRK3	potassium inwardly-rectifying channel, subfamily J, member 9	protein-coding	0.095000	0.651741	
mm_18952.1	chr2	76786154	76786354	-	1	NA	NA	NA	110939	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.035000	0.542289	
mm_48466.1	chr5	140830274	140830474	-	1	NA	NA	NA	57	NM_010302	14673	Mm.370185	NM_010302	ENSMUSG00000000149	Gna12	AI414047|AI504261|Galpha12	guanine nucleotide binding protein, alpha 12	protein-coding	0.160000	0.845771	
mm_81506.1	chr9	110034594	110034794	+	1	NA	NA	NA	-17327	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.015000	0.467662	
mm_140252.1	chr17	84188515	84188715	+	1	NA	NA	NA	-668	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.080000	0.676617	
mm_50166.1	chr6	41553528	41553728	+	1	NA	NA	NA	31852	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.010000	0.432836	
mm_109814.1	chr12	3427426	3427626	-	1	NA	NA	NA	669	NM_172421	75302	Mm.120475	NM_172421	ENSMUSG00000037486	Asxl2	4930556B16Rik|mKIAA1685	additional sex combs like 2 (Drosophila)	protein-coding	0.065000	0.606965	
mm_140929.1	chr17	24251290	24251490	-	1	NA	NA	NA	19	NM_007634	12449	Mm.77695	NM_007634	ENSMUSG00000072082	Ccnf	CycF|Fbxo1	cyclin F	protein-coding	0.105000	0.701493	
mm_146247.1	chr18	77773895	77774095	+	1	NA	NA	NA	227	NM_007505	11946	Mm.276137	NM_007505	ENSMUSG00000025428	Atp5a1	AI035633|AL022851|AL023067|Atpm|D18Ertd206e|Mom2	ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1	protein-coding	0.095000	0.631841	
mm_115297.1	chr13	111999937	112000137	+	1	NA	NA	NA	132101	NR_130345	102636620	Mm.402328	NR_130345	ENSMUSG00000086111	Gm15326	OTTMUSG00000020187	predicted gene 15326	ncRNA	0.010000	0.437811	-73(GACCTTTAAAGA,-,0.00),-72(ACCTTTAAAGAG,-,0.00),-71(CCTTTAAAGAGG,+,0.00)
mm_49292.1	chr6	17693821	17694021	+	1	NA	NA	NA	-73	NM_001289624	64213	Mm.12051	NM_022332	ENSMUSG00000029534	St7	9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7	suppression of tumorigenicity 7	protein-coding	0.070000	0.616915	
mm_53323.1	chr6	129219967	129220167	+	1	NA	NA	NA	17978	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.005000	0.452736	
mm_83736.1	chr9	51076982	51077182	-	1	NA	NA	NA	12	NM_001033534	244864	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0.045000	0.641791	
mm_50093.1	chr6	41532860	41533060	+	1	NA	NA	NA	11184	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.015000	0.457711	-65(CCTTATATGACA,+,0.00)
mm_75990.1	chr8	72386938	72387138	-	1	NA	NA	NA	34436	NM_001122832	13859	Mm.288894	NM_007944	ENSMUSG00000006276	Eps15l1	9830147J04Rik|AI593686|Eps15-rs|Eps15R	epidermal growth factor receptor pathway substrate 15-like 1	protein-coding	0.015000	0.597015	22(CCCTCTAAGAGG,-,0.00)
mm_7317.1	chr1	99650343	99650543	-	1	NA	NA	NA	-122322	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0.005000	0.288557	
mm_85575.1	chr9	107289410	107289610	-	1	NA	NA	NA	-114	NM_001316691	102626	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0.025000	0.537313	
mm_172646.1	chr8	26586974	26587174	-	1	NA	NA	NA	237349	NR_045904	72316	Mm.490534	NR_045904	ENSMUSG00000100335	2310008N11Rik	-	RIKEN cDNA 2310008N11 gene	ncRNA	0.065000	0.656716	
mm_94639.1	chr11	16912355	16912555	+	1	NA	NA	NA	38827	NR_110421	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.020000	0.432836	
mm_56856.1	chr6	118197227	118197427	-	1	NA	NA	NA	417	NM_009050	19713	Mm.57199	NM_009050	ENSMUSG00000030110	Ret	PTC|RET51|RET9|c-Ret	ret proto-oncogene	protein-coding	0.115000	0.736318	
mm_110768.1	chr12	70263341	70263541	-	1	NA	NA	NA	35600	NR_045174	414124	Mm.416164	NR_045174	ENSMUSG00000085298	F730035M05Rik	-	RIKEN cDNA F730035M05 gene	ncRNA	0.015000	0.373134	
mm_6270.1	chr1	69548897	69549097	-	1	NA	NA	NA	136963	NM_011770	22779	Mm.106343	NM_011770	ENSMUSG00000025997	Ikzf2	A730095J18Rik|Helios|Zfpn1a2|Znfn1a2	IKAROS family zinc finger 2	protein-coding	0.010000	0.402985	
mm_112581.1	chr13	13709856	13710056	+	1	NA	NA	NA	-74103	NM_001302997	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0.000000	0.353234	8(GCTTTTATAGTA,+,0.00)
mm_165102.1	chr19	55892627	55892827	+	1	NA	NA	NA	-2594	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.015000	0.407960	
mm_91693.1	chr10	43997285	43997485	-	1	NA	NA	NA	7461	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.010000	0.482587	
mm_106019.1	chr11	116022743	116022943	-	1	NA	NA	NA	1661	NM_008211	15081	Mm.18516	NM_008211	ENSMUSG00000016559	H3f3b	9430068D06Rik|H3.3B	H3 histone, family 3B	protein-coding	0.005000	0.308458	
mm_40673.1	chr5	65536762	65536962	+	1	NA	NA	NA	-383	NM_016786	53323	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.045000	0.517413	
mm_150356.1	chr19	34648940	34649140	+	1	NA	NA	NA	8151	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.005000	0.407960	
mm_156792.1	chrX	162760358	162760558	+	1	NA	NA	NA	86	NM_009031	245688	Mm.270186	NM_009031	ENSMUSG00000031353	Rbbp7	AA409861|AI173248|AU019541|BB114024|mRbAp46	retinoblastoma binding protein 7	protein-coding	0.085000	0.666667	
mm_101210.1	chr11	20063825	20064025	-	1	NA	NA	NA	49026	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.005000	0.378109	
mm_71741.1	chr8	64445514	64445714	+	1	NA	NA	NA	68827	NR_030491	735270		NR_030491	ENSMUSG00000076042	Mir710	Mirn710|mmu-mir-710	microRNA 710	ncRNA	0.010000	0.472637	
mm_101356.1	chr11	23739926	23740126	-	1	NA	NA	NA	30944	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.010000	0.482587	
mm_120929.1	chr14	76487634	76487834	+	1	NA	NA	NA	-702	NM_001177751	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.035000	0.547264	
mm_113516.1	chr13	37787973	37788173	+	1	NA	NA	NA	-37965	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.015000	0.378109	
mm_20014.1	chr2	119230297	119230497	-	1	NA	NA	NA	-532	NM_001290796	72112	Mm.46317	NM_028104	ENSMUSG00000027317	Ppp1r14d	2010107K19Rik|GBPI-1|Ppp1r14	protein phosphatase 1, regulatory (inhibitor) subunit 14D	protein-coding	0.005000	0.492537	
mm_37682.1	chr4	129222625	129222825	-	1	NA	NA	NA	5186	NM_001285866	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.025000	0.626866	
mm_164931.1	chr18	82692543	82692743	+	1	NA	NA	NA	91	NM_177832	329002	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.210000	0.855721	
mm_137388.1	chr17	25809031	25809231	+	1	NA	NA	NA	46	NM_001164225	214931	Mm.152289	NM_001164225	ENSMUSG00000025738	Fbxl16	BC042620|Scirr1	F-box and leucine-rich repeat protein 16	protein-coding	0.095000	0.731343	
mm_136238.1	chr16	90810297	90810497	-	1	NA	NA	NA	16	NM_029497	207932	Mm.328688	NM_029497	ENSMUSG00000039929	Urb1	4921511H13Rik|5730405K23Rik|AA670781|AI645590|mKIAA0539	URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	protein-coding	0.080000	0.661692	
mm_29023.1	chr3	101924435	101924635	-	1	NA	NA	NA	-82	NM_001039371	242126	Mm.90204	NM_001039371	ENSMUSG00000033147	Slc22a15	2610034P21Rik|4930477M19|A530052I06Rik|BB219042	solute carrier family 22 (organic anion/cation transporter), member 15	protein-coding	0.115000	0.691542	
mm_55897.1	chr6	83537025	83537225	-	1	NA	NA	NA	-874	NM_009610	11468	Mm.292865	NM_009610	ENSMUSG00000059430	Actg2	ACTA3|Act-4|Act4|SMGA	actin, gamma 2, smooth muscle, enteric	protein-coding	0.015000	0.512438	
mm_158084.1	chrX	101266698	101266898	-	1	NA	NA	NA	1457	NM_001308535	16186	Mm.2923	NM_013563	ENSMUSG00000031304	Il2rg	CD132|[g]c|gamma(c)|gc|p64	interleukin 2 receptor, gamma chain	protein-coding	0.005000	0.487562	
mm_5807.1	chr1	52232986	52233186	-	1	NA	NA	NA	146	NM_001081081	14660	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.135000	0.746269	
mm_133364.1	chr16	84703759	84703959	+	1	NA	NA	NA	-9164	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.010000	0.353234	
mm_53289.1	chr6	128992976	128993176	+	1	NA	NA	NA	115	NR_015455	408064	Mm.172429	NR_015455		BC064078	-	cDNA sequence BC064078	ncRNA	0.005000	0.442786	
mm_116084.1	chr13	28537595	28537795	-	1	NA	NA	NA	173178	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.000000	0.328358	
mm_23832.1	chr3	81932550	81932750	+	1	NA	NA	NA	49	NM_177662	229445	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	0.065000	0.646766	
mm_70304.1	chr8	4088102	4088302	+	1	NA	NA	NA	17562	NM_026956	69142	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	0.035000	0.457711	
mm_14611.1	chr2	136713204	136713404	+	1	NA	NA	NA	-146	NM_011428	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.045000	0.537313	-39(GTTTATAAAAGA,-,0.00)
mm_162329.1	chr1	40515399	40515599	+	1	NA	NA	NA	137	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.005000	0.402985	
mm_140273.1	chr17	84738691	84738891	+	1	NA	NA	NA	51995	NM_028233	72416	Mm.217027	NM_028233	ENSMUSG00000024120	Lrpprc	3110001K13Rik|C76645|Gp130|Lrp130|Lsfc	leucine-rich PPR-motif containing	protein-coding	0.015000	0.527363	-31(GTTTAAATAGCC,+,0.00)
mm_146913.1	chr18	31447262	31447462	-	1	NA	NA	NA	53	NM_009308	20983	Mm.233846	NM_009308	ENSMUSG00000024261	Syt4	SytIV	synaptotagmin IV	protein-coding	0.040000	0.597015	
mm_87259.1	chr10	41519755	41519955	+	1	NA	NA	NA	355	NM_016898	53599	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.160000	0.746269	
mm_150129.1	chr19	30030548	30030748	+	1	NA	NA	NA	135	NM_144873	109113	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0.175000	0.776119	
mm_172649.1	chr8	29194114	29194314	+	1	NA	NA	NA	25422	NM_001347499	210801	Mm.248433	NM_153135	ENSMUSG00000063626	Unc5d	D930029E11Rik|Unc5h4|mKIAA1777	unc-5 netrin receptor D	protein-coding	0.080000	0.666667	
mm_11459.1	chr2	32224941	32225141	+	1	NA	NA	NA	-11642	NM_145145	99011	Mm.31192	NM_145145	ENSMUSG00000039254	Pomt1	AI505244	protein-O-mannosyltransferase 1	protein-coding	0.015000	0.532338	
mm_132385.1	chr16	34930242	34930442	+	1	NA	NA	NA	8987	NR_040536	76649	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.025000	0.587065	
mm_20001.1	chr2	119029243	119029443	-	1	NA	NA	NA	50	NM_199310	269336	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	0.060000	0.567164	
mm_13119.1	chr2	91663901	91664101	+	1	NA	NA	NA	10793	NM_146124	228359	Mm.22413	NM_146124	ENSMUSG00000027247	Arhgap1	B230365D05Rik|C76222|Cdc42GAP|p50rhoGAP	Rho GTPase activating protein 1	protein-coding	0.005000	0.462687	
mm_51566.1	chr6	83575836	83576036	+	1	NA	NA	NA	-3432	NM_024239	70527	Mm.32801	NM_024239	ENSMUSG00000006906	Stambp	5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198	STAM binding protein	protein-coding	0.010000	0.467662	
mm_145865.1	chr18	65461014	65461214	+	1	NA	NA	NA	30117	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.368159	65(CTTTTTAAACTC,+,0.00)
mm_18415.1	chr2	60700023	60700223	-	1	NA	NA	NA	22480	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.005000	0.452736	
mm_143703.1	chr17	80577648	80577848	-	1	NA	NA	NA	-13914	NM_001033443	381113	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.070000	0.527363	
mm_29955.1	chr3	133092286	133092486	-	1	NA	NA	NA	531	NM_027927	71793	Mm.246726	NM_027927	ENSMUSG00000028016	Ints12	1110020M19Rik|2810027J24Rik|4930529N21Rik|A230056J18Rik|AI666778|Phf22|int12	integrator complex subunit 12	protein-coding	0.025000	0.442786	
mm_78412.1	chr9	30669353	30669553	+	1	NA	NA	NA	242124	NM_028874	102607	Mm.35084	NM_028874	ENSMUSG00000031993	Snx19	3526401K03Rik|AI195321|AI848208|mKIAA0254	sorting nexin 19	protein-coding	0.020000	0.442786	
mm_58732.1	chr7	13029781	13029981	+	1	NA	NA	NA	4896	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.015000	0.572139	
mm_9109.1	chr1	170110732	170110932	-	1	NA	NA	NA	-21888	NM_022563	18214	Mm.229249	NM_022563	ENSMUSG00000026674	Ddr2	AW495251|Ntrkr3|tyro10	discoidin domain receptor family, member 2	protein-coding	0.010000	0.502488	
mm_29586.1	chr3	117804707	117804907	-	1	NA	NA	NA	64129	NM_001190156	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.010000	0.353234	
mm_59762.1	chr7	28830049	28830249	+	1	NA	NA	NA	-3645	NM_010706	16855	Mm.210336	NM_010706	ENSMUSG00000053964	Lgals4	gal-4	lectin, galactose binding, soluble 4	protein-coding	0.020000	0.537313	
mm_89310.1	chr10	87916392	87916592	+	1	NA	NA	NA	-50179	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.000000	0.447761	
mm_103872.1	chr11	83525856	83526056	-	1	NA	NA	NA	-3857	NM_001045543	629303	Mm.390417	NM_001045543	ENSMUSG00000018925	Heatr9	Gm11435|OTTMUSG00000000990	HEAT repeat containing 9	protein-coding	0.015000	0.502488	
mm_34090.1	chr4	138832862	138833062	+	1	NA	NA	NA	1086	NM_001082531	18780	Mm.4675	NM_011108	ENSMUSG00000058908	Pla2g2a	EF|Mom1|Pla2|sPLA2|sPla2-IIA	phospholipase A2, group IIA (platelets, synovial fluid)	protein-coding	0.010000	0.512438	
mm_64148.1	chr7	141265320	141265520	+	1	NA	NA	NA	1004	NM_001252601	54123	Mm.3233	NM_016850	ENSMUSG00000025498	Irf7	-	interferon regulatory factor 7	protein-coding	0.040000	0.567164	
mm_109068.1	chr12	104345249	104345449	+	1	NA	NA	NA	6863	NM_011458	20714	Mm.291569	NM_011458	ENSMUSG00000058207	Serpina3k	1300001I07Rik|D12Rp54|MMCM2|MMSpi2|RP54|Spi-2|Spi2|contrapsin	serine (or cysteine) peptidase inhibitor, clade A, member 3K	protein-coding	0.010000	0.472637	40(CTCTTTATGGCC,+,0.00)
mm_44731.1	chr5	31093386	31093586	-	1	NA	NA	NA	41	NM_011773	22784	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.090000	0.726368	
mm_58159.1	chr6	142472807	142473007	-	1	NA	NA	NA	202	NM_145572	232493	Mm.275975	NM_145572	ENSMUSG00000030244	Gys2	BC021322|LGS	glycogen synthase 2	protein-coding	0.015000	0.552239	
mm_78664.1	chr9	40685931	40686131	+	1	NA	NA	NA	67	NM_133733	71566	Mm.280560	NM_133733	ENSMUSG00000032024	Clmp	9030425E11Rik|ACAM|ASP5|AW557819	CXADR-like membrane protein	protein-coding	0.065000	0.621891	
mm_119082.1	chr14	30886402	30886602	+	1	NA	NA	NA	26	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.015000	0.557214	
mm_105479.1	chr11	105938464	105938664	-	1	NA	NA	NA	5583	NM_007805	13056	Mm.149403	NM_007805	ENSMUSG00000019590	Cyb561	-	cytochrome b-561	protein-coding	0.025000	0.567164	-32(CCTTAAATAGCT,+,0.00)
mm_57678.1	chr6	128496655	128496855	-	1	NA	NA	NA	29965	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.015000	0.457711	
mm_137538.1	chr17	27556548	27556748	+	1	NA	NA	NA	-5	NM_001166476	111241	Mm.426212	NM_001166476	ENSMUSG00000078249	Hmga1-rs1	ENSMUSG00000041059|Hmgi-rs1	high mobility group AT-hook I, related sequence 1	protein-coding	0.095000	0.666667	-29(CTCTTTTTAAGC,-,0.00),-27(CTTTTTAAGCTC,+,0.00)
mm_170101.1	chr17	39843232	39843432	+	1	NA	NA	NA	335	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.075000	0.606965	
mm_34069.1	chr4	138456714	138456914	+	1	NA	NA	NA	1666	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.020000	0.457711	
mm_6406.1	chr1	72873797	72873997	-	1	NA	NA	NA	968	NM_010518	16011	Mm.405761	NM_010518	ENSMUSG00000026185	Igfbp5	AI256729|AW208790|IGFBP-5|IGFBP-5P	insulin-like growth factor binding protein 5	protein-coding	0.095000	0.661692	
mm_80821.1	chr9	96759526	96759726	+	1	NA	NA	NA	-5936	NR_102295	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	0.020000	0.572139	
mm_168731.1	chr12	114094315	114094515	-	1	NA	NA	NA	375051	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.000000	0.462687	
mm_106633.1	chr11	120903522	120903722	-	1	NA	NA	NA	29250	NM_027745	71276	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.040000	0.527363	
mm_9213.1	chr1	171230936	171231136	-	1	NA	NA	NA	3313	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.030000	0.542289	
mm_9035.1	chr1	167234721	167234921	-	1	NA	NA	NA	50306	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.035000	0.557214	
mm_34931.1	chr4	155839599	155839799	+	1	NA	NA	NA	19	NM_024263	74761	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	0.040000	0.646766	
mm_13837.1	chr2	119351806	119352006	+	1	NA	NA	NA	664	NM_026929	69065	Mm.35083	NM_026929	ENSMUSG00000027313	Chac1	1810008K03Rik	ChaC, cation transport regulator 1	protein-coding	0.015000	0.517413	
mm_5094.1	chr1	4807581	4807781	-	1	NA	NA	NA	-212	NM_008866	18777	Mm.299955	NM_008866	ENSMUSG00000025903	Lypla1	Pla1a	lysophospholipase 1	protein-coding	0.130000	0.726368	
mm_93485.1	chr10	111997006	111997206	-	1	NA	NA	NA	158	NM_028608	73690	Mm.173790	NM_028608	ENSMUSG00000056888	Glipr1	2410114O14Rik|RTVP-1|RTVP1|mRTVP-1	GLI pathogenesis-related 1 (glioma)	protein-coding	0.015000	0.502488	
mm_20380.1	chr2	128687306	128687506	-	1	NA	NA	NA	-11	NM_008569	17222	Mm.277408	NM_008569	ENSMUSG00000014355	Anapc1	2610021O03Rik|AI047775|AI853536|AW547281|Apc1|Mcpr|tsg24	anaphase promoting complex subunit 1	protein-coding	0.080000	0.601990	
mm_50507.1	chr6	49036549	49036749	+	1	NA	NA	NA	131	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.040000	0.557214	
mm_8195.1	chr1	138119073	138119273	-	1	NA	NA	NA	55953	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.005000	0.358209	8(TGCTTTAAAAGC,-,0.00),9(GCTTTAAAAGCA,+,0.00)
mm_106527.1	chr11	120572773	120572973	-	1	NA	NA	NA	63	NM_011032	18453	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.140000	0.726368	-33(GGATTTATAAAG,-,0.00)
mm_73515.1	chr8	107408487	107408687	+	1	NA	NA	NA	-5382	NM_008706	18104	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	0.005000	0.447761	-44(TTCTATTTAGGG,-,0.00)
mm_65457.1	chr7	25464167	25464367	-	1	NA	NA	NA	13358	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.010000	0.452736	
mm_151444.1	chr19	57477499	57477699	+	1	NA	NA	NA	24693	NM_028115	72133	Mm.258404	NM_028115	ENSMUSG00000025086	Trub1	2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870	TruB pseudouridine (psi) synthase family member 1	protein-coding	0.020000	0.412935	
mm_36396.1	chr4	77784664	77784864	-	1	NA	NA	NA	427131	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.343284	
mm_118652.1	chr14	21750431	21750631	+	1	NA	NA	NA	0	NM_026283	67630	Mm.102765	NM_026283	ENSMUSG00000021770	Samd8	1110053F04Rik|1700010P07Rik|SMSr	sterile alpha motif domain containing 8	protein-coding	0.090000	0.666667	
mm_109249.1	chr12	109453390	109453590	+	1	NA	NA	NA	35	NM_010052	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta-like 1 homolog (Drosophila)	protein-coding	0.145000	0.761194	
mm_55994.1	chr6	86365443	86365643	-	1	NA	NA	NA	-140	NM_025591	66488	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	0.095000	0.696517	
mm_73188.1	chr8	95352144	95352344	+	1	NA	NA	NA	-52	NM_008609	17388	Mm.217116	NM_008609	ENSMUSG00000031790	Mmp15	AI503551|MT-MMP 2|MT2-MMP	matrix metallopeptidase 15	protein-coding	0.105000	0.711443	-11(GGCCCTTTAAGA,-,0.00),-8(CCTTTAAGAACC,+,0.00)
mm_93748.1	chr10	120161347	120161547	-	1	NA	NA	NA	40090	NM_028679	73914	Mm.146194	NM_028679	ENSMUSG00000020227	Irak3	4833428C18Rik|AI563835|IRAK-M	interleukin-1 receptor-associated kinase 3	protein-coding	0.010000	0.517413	
mm_63673.1	chr7	130524618	130524818	+	1	NA	NA	NA	-4349	NM_001271343	11907	Mm.216321	NM_013799	ENSMUSG00000030850	Ate1	AI225793|AW547406	arginyltransferase 1	protein-coding	0.005000	0.348259	
mm_47522.1	chr5	124111772	124111972	-	1	NA	NA	NA	-428	NM_001347478	66627	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	0.065000	0.601990	
mm_63905.1	chr7	139213215	139213415	+	1	NA	NA	NA	-8	NM_001162540	57740	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	0.095000	0.661692	
mm_24435.1	chr3	90560225	90560425	+	1	NA	NA	NA	19102	NM_026416	67860	Mm.331185	NM_026416	ENSMUSG00000074457	S100a16	2300002L21Rik|AI325039|AI663996|DT1P1A7|S100F	S100 calcium binding protein A16	protein-coding	0.015000	0.497512	
mm_54137.1	chr6	21852432	21852632	-	1	NA	NA	NA	-17	NM_173007	269831	Mm.21950	NM_173007	ENSMUSG00000029669	Tspan12	9030619E17|AI426782|AI663988|AW111457|Tm4sf12	tetraspanin 12	protein-coding	0.030000	0.477612	18(CCATTTTAAAGG,-,0.00),19(CATTTTAAAGGG,+,0.00)
mm_42743.1	chr5	120734932	120735132	+	1	NA	NA	NA	14816	NM_145227	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.030000	0.487562	
mm_18941.1	chr2	76759970	76760170	-	1	NA	NA	NA	84755	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.447761	
mm_127276.1	chr15	99725657	99725857	+	1	NA	NA	NA	139	NM_183256	66379	Mm.5265	NM_183256	ENSMUSG00000023020	Cox14	2310016M24Rik|AA959804	cytochrome c oxidase assembly protein 14	protein-coding	0.095000	0.676617	
mm_38840.1	chr4	149166539	149166739	-	1	NA	NA	NA	68	NM_001081274	110208	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.100000	0.656716	
mm_151229.1	chr19	53717933	53718133	+	1	NA	NA	NA	40727	NM_001170847	73713	Mm.313695	NM_001170847	ENSMUSG00000043639	Rbm20	1110018J23Rik|2010003H22Rik|AI646761	RNA binding motif protein 20	protein-coding	0.005000	0.398010	
mm_156481.1	chrX	144317913	144318113	+	1	NA	NA	NA	47	NM_026247	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031|OTTMUSG00000018917	asparagine-linked glycosylation 13	protein-coding	0.115000	0.636816	
mm_56603.1	chr6	109505073	109505273	-	1	NA	NA	NA	676532	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.060000	0.487562	
mm_28554.1	chr3	93376281	93376481	-	1	NA	NA	NA	-17318	NM_009100	20129	Mm.1417	NM_009100	ENSMUSG00000041984	Rptn	-	repetin	protein-coding	0.005000	0.477612	
mm_157493.1	chrX	48453652	48453852	-	1	NA	NA	NA	9380	NM_019680	56501	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|ENSMUSG00000053512|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	0.150000	0.820896	
mm_167593.1	chr9	47894093	47894293	-	1	NA	NA	NA	-75985	NR_046048	100038460	Mm.447649	NR_046048		Gm10677	ENSMUSG00000074363	predicted gene 10677	ncRNA	0.000000	0.517413	
mm_138962.1	chr17	44561888	44562088	+	1	NA	NA	NA	174188	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.015000	0.462687	
mm_3857.1	chr1	160978483	160978683	+	1	NA	NA	NA	-23	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.020000	0.447761	
mm_89653.1	chr10	97479636	97479836	+	1	NA	NA	NA	236	NM_001190451	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.010000	0.482587	
mm_59125.1	chr7	19939775	19939975	+	1	NA	NA	NA	10868	NM_027308	70080	Mm.98583	NM_027308	ENSMUSG00000040498	Igsf23	2210010C17Rik	immunoglobulin superfamily, member 23	protein-coding	0.020000	0.442786	-59(GCCTTTAGACTC,+,0.00),38(TCTTATAGAGCT,+,0.00)
mm_30341.1	chr3	151736859	151737059	-	1	NA	NA	NA	13000	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.015000	0.482587	
mm_45393.1	chr5	66151207	66151407	-	1	NA	NA	NA	-329	NM_178446	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.035000	0.547264	
mm_69805.1	chr7	141214366	141214566	-	1	NA	NA	NA	-386	NM_028050	72000	Mm.334314	NM_028050	ENSMUSG00000025500	Lmntd2	1600016N20Rik	lamin tail domain containing 2	protein-coding	0.015000	0.562189	
mm_83747.1	chr9	51160453	51160653	-	1	NA	NA	NA	44552	NM_019493	56057	Mm.431317	NM_019493	ENSMUSG00000032056	Btg4	C86116|PC3B	B cell translocation gene 4	protein-coding	0.005000	0.517413	
mm_115670.1	chr13	12520297	12520497	-	1	NA	NA	NA	53	NM_133643	171211	Mm.159671	NM_133643	ENSMUSG00000095105	Edaradd	1810032E07Rik|5830469M23Rik|A630043P06|cr	EDAR (ectodysplasin-A receptor)-associated death domain	protein-coding	0.075000	0.621891	
mm_14665.1	chr2	138278406	138278606	+	1	NA	NA	NA	13	NM_145534	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.055000	0.562189	
mm_126494.1	chr15	81663836	81664036	+	1	NA	NA	NA	47	NR_110362	214669	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	l(3)mbt-like 2 (Drosophila)	protein-coding	0.085000	0.606965	
mm_85555.1	chr9	106691008	106691208	-	1	NA	NA	NA	-5156	NM_001286498	21767	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.020000	0.427861	-7(TTTTTTAAAGAG,+,0.00)
mm_20417.1	chr2	129300792	129300992	-	1	NA	NA	NA	3522	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.005000	0.422886	
mm_47524.1	chr5	124152709	124152909	-	1	NA	NA	NA	34373	NM_001289472	19679	Mm.44261	NM_011256	ENSMUSG00000029406	Pitpnm2	NIR3|RDGBA2|Rdgb2|mKIAA1457	phosphatidylinositol transfer protein, membrane-associated 2	protein-coding	0.015000	0.467662	
mm_55002.1	chr6	48835537	48835737	-	1	NA	NA	NA	5351	NM_023056	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.020000	0.537313	
mm_134097.1	chr16	9921065	9921265	-	1	NA	NA	NA	71368	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.000000	0.422886	
mm_113611.1	chr13	41468441	41468641	+	1	NA	NA	NA	18819	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.015000	0.462687	-32(GCTTAAAGAGCT,+,0.00)
mm_45636.1	chr5	76658249	76658449	-	1	NA	NA	NA	66635	NM_199032	381644	Mm.332452	NM_199032	ENSMUSG00000036403	Cep135	BC062951|Cep4|Gm1044	centrosomal protein 135	protein-coding	0.065000	0.592040	
mm_163713.1	chr13	109933764	109933964	+	1	NA	NA	NA	30055	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.035000	0.477612	
mm_7946.1	chr1	133914930	133915130	-	1	NA	NA	NA	6371	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.025000	0.547264	
mm_79317.1	chr9	52088156	52088356	+	1	NA	NA	NA	-27367	NR_105750	102465150		NR_105750	ENSMUSG00000099311	Mir6244	Gm27368|mmu-mir-6244	microRNA 6244	ncRNA	0.030000	0.462687	
mm_10739.1	chr2	23069059	23069259	+	1	NA	NA	NA	87	NM_001102438	74159	Mm.181973	NM_028793	ENSMUSG00000026781	Acbd5	1300014E15Rik	acyl-Coenzyme A binding domain containing 5	protein-coding	0.085000	0.696517	
mm_93540.1	chr10	115384439	115384639	-	1	NA	NA	NA	-104	NM_025780	66816	Mm.32314	NM_025780	ENSMUSG00000020137	Thap2	2900040O07Rik|9030625G08Rik|AI450385|AI649097	THAP domain containing, apoptosis associated protein 2	protein-coding	0.060000	0.636816	
mm_108264.1	chr12	78691571	78691771	+	1	NA	NA	NA	136	NM_029069	70897	Mm.56514	NM_027597	ENSMUSG00000056987	Fam71d	4921509E07Rik|4930516C23Rik|GARI-L2	family with sequence similarity 71, member D	protein-coding	0.005000	0.462687	
mm_150592.1	chr19	40679229	40679429	+	1	NA	NA	NA	19559	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.015000	0.427861	
mm_3197.1	chr1	135818567	135818767	+	1	NA	NA	NA	69	NM_133664	16763	Mm.36726	NM_133664	ENSMUSG00000041782	Lad1	-	ladinin	protein-coding	0.120000	0.756219	
mm_45751.1	chr5	86745700	86745900	-	1	NA	NA	NA	7	NM_172880	243084	Mm.130801	NM_172880	ENSMUSG00000054537	Tmprss11e	A030012E10|AY787860|DESC1|TTSP	transmembrane protease, serine 11e	protein-coding	0.015000	0.477612	
mm_130992.1	chr15	103429440	103429640	-	1	NA	NA	NA	887	NM_028797	74174	Mm.325325	NM_028797	ENSMUSG00000022487	Gtsf1	1700006H03Rik|Cue110	gametocyte specific factor 1	protein-coding	0.005000	0.412935	
mm_133528.1	chr16	90997005	90997205	+	1	NA	NA	NA	13990	NM_001045515	104015	Mm.187079	NM_001045515	ENSMUSG00000022973	Synj1	A930006D20Rik|AA675315|mKIAA0910	synaptojanin 1	protein-coding	0.010000	0.457711	
mm_163007.1	chr11	36371852	36372052	+	1	NA	NA	NA	-391863	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra|mKIAA0869	WW, C2 and coiled-coil domain containing 1	protein-coding	0.030000	0.462687	
mm_133209.1	chr16	74804863	74805063	+	1	NA	NA	NA	-394051	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.005000	0.313433	
mm_148886.1	chr19	6863581	6863781	+	1	NA	NA	NA	-5470	NM_001081291	78317	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.005000	0.442786	
mm_117043.1	chr13	58358690	58358890	-	1	NA	NA	NA	-3928	NM_175214	75050	Mm.446094	NM_175214	ENSMUSG00000060176	Kif27	4930517I18Rik	kinesin family member 27	protein-coding	0.140000	0.731343	
mm_149043.1	chr19	8820576	8820776	+	1	NA	NA	NA	1275	NM_001081196	68693	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0.100000	0.691542	
mm_10827.1	chr2	24385256	24385456	+	1	NA	NA	NA	-41	NM_177611	215632	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.005000	0.547264	
mm_134531.1	chr16	19241624	19241824	-	1	NA	NA	NA	45017	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.000000	0.417910	
mm_16091.1	chr2	168960942	168961142	+	1	NA	NA	NA	-5455	NM_009564	22722	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	-	zinc finger protein 64	protein-coding	0.000000	0.502488	
mm_109361.1	chr12	109636046	109636246	+	1	NA	NA	NA	134	NR_046302	449562		NR_046302	ENSMUSG00000088294	AF357425	MBII-48	snoRNA AF357425	snoRNA	0.015000	0.368159	
mm_91135.1	chr10	19609189	19609389	-	1	NA	NA	NA	-12739	NM_178258	237310	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	0.030000	0.562189	
mm_71136.1	chr8	39005867	39006067	+	1	NA	NA	NA	100	NM_030254	80286	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	0.090000	0.711443	
mm_68562.1	chr7	114706139	114706339	-	1	NA	NA	NA	-12404	NM_054084	116903	Mm.273838	NM_054084	ENSMUSG00000030666	Calcb	CGRP2|Calc2	calcitonin-related polypeptide, beta	protein-coding	0.045000	0.502488	
mm_98304.1	chr11	90032964	90033164	+	1	NA	NA	NA	2716	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.020000	0.477612	
mm_170072.1	chr17	33289452	33289652	+	1	NA	NA	NA	8	NM_001142957	100043468	Mm.276296	NM_001142957	ENSMUSG00000096910	Zfp955b	A430003O12Rik|C430039G02Rik|C530035A18Rik|Gm4455|Zfp883b	zinc finger protein 955B	protein-coding	0.040000	0.527363	
mm_18935.1	chr2	76750489	76750689	-	1	NA	NA	NA	75274	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.010000	0.452736	
mm_29240.1	chr3	107215920	107216120	-	1	NA	NA	NA	5712	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.512438	
mm_26477.1	chr3	144596972	144597172	+	1	NA	NA	NA	26645	NM_053102	93684	Mm.29812	NM_053102	ENSMUSG00000037072	Selenof	9430015P09Rik|Sep15	selenoprotein F	protein-coding	0.000000	0.363184	
mm_153520.1	chr19	41743586	41743786	-	1	NA	NA	NA	170	NM_015748	20562	Mm.39155	NM_015748	ENSMUSG00000025020	Slit1	Slil1|mKIAA0813	slit homolog 1 (Drosophila)	protein-coding	0.100000	0.661692	
mm_134430.1	chr16	17927750	17927950	-	1	NA	NA	NA	369	NM_153150	13358	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0.110000	0.726368	
mm_169547.1	chr15	103241953	103242153	+	1	NA	NA	NA	1599	NR_002883	434858	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.010000	0.393035	-100(TGGTATTAAAGA,-,0.00)
mm_5240.1	chr1	16104289	16104489	-	1	NA	NA	NA	44	NM_011291	19989	Mm.319659	NM_011291	ENSMUSG00000043716	Rpl7	Rpl7a|Surf-3	ribosomal protein L7	protein-coding	0.045000	0.517413	
mm_167101.1	chr7	110243472	110243672	+	1	NA	NA	NA	21869	NM_009302	20947	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.005000	0.427861	
mm_156954.1	chrX	169987669	169987869	+	1	NA	NA	NA	-8852	NR_029457	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.060000	0.592040	
mm_45592.1	chr5	74677744	74677944	-	1	NA	NA	NA	28	NM_001159580	16924	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.020000	0.572139	
mm_129708.1	chr15	81810769	81810969	-	1	NA	NA	NA	-545	NM_017376	21685	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.100000	0.716418	
mm_143206.1	chr17	62855805	62856005	-	1	NA	NA	NA	25412	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.000000	0.462687	
mm_39013.1	chr4	152120697	152120897	-	1	NA	NA	NA	4454	NM_033042	85030	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0.040000	0.557214	
mm_107802.1	chr12	64965683	64965883	+	1	NA	NA	NA	41	NM_177805	328108	Mm.138465	NM_177805	ENSMUSG00000035614	Fam179b	A430041B07Rik|BC062107|C130034K06|mKIAA0423	family with sequence similarity 179, member B	protein-coding	0.075000	0.671642	
mm_147040.1	chr18	34862690	34862890	-	1	NA	NA	NA	1583	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.045000	0.626866	
mm_71708.1	chr8	61934985	61935185	+	1	NA	NA	NA	6998	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.000000	0.417910	
mm_2563.1	chr1	118299222	118299422	+	1	NA	NA	NA	11810	NM_011650	22099	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	0.000000	0.442786	
mm_14516.1	chr2	132575962	132576162	+	1	NA	NA	NA	2186	NM_001291050	74182	Mm.211211	NM_027096	ENSMUSG00000027346	Gpcpd1	2310004G06Rik|2310032D16Rik|AU015213|Gde5|Prei4|mKIAA1434	glycerophosphocholine phosphodiesterase 1	protein-coding	0.010000	0.447761	
mm_138741.1	chr17	37002417	37002617	+	1	NA	NA	NA	-8	NM_001013745	22715	Mm.305561	NM_009559	ENSMUSG00000036036	Zfp57	G19|Zfp-57	zinc finger protein 57	protein-coding	0.040000	0.502488	
mm_2609.1	chr1	120340525	120340725	+	1	NA	NA	NA	43	NM_207233	226359	Mm.337409	NM_207233	ENSMUSG00000036907	C1ql2	BC040774|CTRP10	complement component 1, q subcomponent-like 2	protein-coding	0.090000	0.671642	
mm_138307.1	chr17	34644738	34644938	+	1	NA	NA	NA	-45	NM_019873	56299	Mm.10025	NM_019873	ENSMUSG00000033739	Fkbpl	DIR1|NG7|Ppiase-X|Wisp39	FK506 binding protein-like	protein-coding	0.040000	0.557214	
mm_44794.1	chr5	32742151	32742351	-	1	NA	NA	NA	4091	NM_001347332	320951	Mm.273765	NM_177298	ENSMUSG00000023452	Pisd	9030221M09Rik	phosphatidylserine decarboxylase	protein-coding	0.030000	0.557214	
mm_123773.1	chr14	70289323	70289523	-	1	NA	NA	NA	74	NM_008915	19057	Mm.439683	NM_008915	ENSMUSG00000022092	Ppp3cc	Calnc|PP2BA gamma	protein phosphatase 3, catalytic subunit, gamma isoform	protein-coding	0.195000	0.796020	
mm_99978.1	chr11	114217627	114217827	+	1	NA	NA	NA	19469	NR_045930	73536	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.050000	0.542289	
mm_100518.1	chr11	120530657	120530857	+	1	NA	NA	NA	30	NM_008101	14527	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.150000	0.741294	
mm_147670.1	chr18	60624228	60624428	-	1	NA	NA	NA	-23	NM_177340	104027	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	0.125000	0.776119	
mm_62920.1	chr7	118592197	118592397	+	1	NA	NA	NA	-31	NM_001331201	381914	Mm.291232	NM_001331201	ENSMUSG00000109284	B230311B06Rik	Gm1695	RIKEN cDNA B230311B06 gene	protein-coding	0.020000	0.537313	
mm_120483.1	chr14	65975714	65975914	+	1	NA	NA	NA	7331	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.040000	0.552239	
mm_151897.1	chr19	5798953	5799153	-	1	NA	NA	NA	-3072	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.000000	0.333333	-77(ACCTTTAAAAGT,-,0.00),-76(CCTTTAAAAGTT,+,0.00)
mm_21279.1	chr2	156928594	156928794	-	1	NA	NA	NA	-41616	NM_029983	77799	Mm.29264	NM_029983	ENSMUSG00000027636	Sla2	A930009E21Rik|AI430952|SLAP-2|SLAP2	Src-like-adaptor 2	protein-coding	0.015000	0.517413	
mm_95061.1	chr11	32455031	32455231	+	1	NA	NA	NA	-241	NM_173784	327900	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	0.145000	0.810945	
mm_44936.1	chr5	36397962	36398162	-	1	NA	NA	NA	77	NM_030889	81840	Mm.34113	NM_030889	ENSMUSG00000029093	Sorcs2	N28137|mKIAA1329	sortilin-related VPS10 domain containing receptor 2	protein-coding	0.130000	0.741294	
mm_127266.1	chr15	99718864	99719064	+	1	NA	NA	NA	1371	NM_010271	14555	Mm.252391	NM_010271	ENSMUSG00000023019	Gpd1	AI747587|Gdc-1|Gdc1|mKIAA4010	glycerol-3-phosphate dehydrogenase 1 (soluble)	protein-coding	0.015000	0.562189	
mm_159152.1	chr2	88768411	88768611	-	1	NA	NA	NA	-198	NM_001005227	257887	Mm.377285	NM_001005227	ENSMUSG00000075115	Olfr1200	MOR225-12	olfactory receptor 1200	protein-coding	0.000000	0.383085	
mm_120422.1	chr14	65380627	65380827	+	1	NA	NA	NA	22051	NM_199029	380912	Mm.270087	NM_199029	ENSMUSG00000034522	Zfp395	BC053701|Gm910	zinc finger protein 395	protein-coding	0.025000	0.562189	
mm_163134.1	chr11	78951089	78951289	+	1	NA	NA	NA	25898	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.025000	0.582090	
mm_15701.1	chr2	163890862	163891062	+	1	NA	NA	NA	27721	NM_183023	241770	Mm.330760	NM_183023	ENSMUSG00000035226	Rims4	6530406L02|Rim4	regulating synaptic membrane exocytosis 4	protein-coding	0.020000	0.467662	
mm_162908.1	chr10	117941120	117941320	+	1	NA	NA	NA	15761	NR_045342	71067	Mm.410793	NR_045342		4933411E08Rik	-	RIKEN cDNA 4933411E08 gene	ncRNA	0.015000	0.467662	-24(CTGTTTATAAGG,-,0.00),-22(GTTTATAAGGTC,+,0.00)
mm_110387.1	chr12	40445676	40445876	-	1	NA	NA	NA	14	NM_172575	246196	Mm.26852	NM_172575	ENSMUSG00000055917	Zfp277	2410017E24Rik|NIRF4	zinc finger protein 277	protein-coding	0.085000	0.656716	
mm_114739.1	chr13	83738781	83738981	+	1	NA	NA	NA	67	NR_029545	723967		NR_029545	ENSMUSG00000065424	Mir9-2	Mirn9-2|mir-9-2|mmu-mir-9-2	microRNA 9-2	ncRNA	0.025000	0.422886	
mm_66035.1	chr7	30636422	30636622	-	1	NA	NA	NA	-670	NM_007959	14008	Mm.4829	NM_007959	ENSMUSG00000006311	Etv2	Etsrp71	ets variant 2	protein-coding	0.015000	0.582090	
mm_4945.1	chr1	191190015	191190215	+	1	NA	NA	NA	-6782	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.010000	0.487562	
mm_93668.1	chr10	117709980	117710180	-	1	NA	NA	NA	678	NM_010786	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.080000	0.656716	
mm_16618.1	chr2	5657301	5657501	-	1	NA	NA	NA	18645	NM_001290376	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.010000	0.442786	59(TGATTTAAAAGG,-,0.00)
mm_73587.1	chr8	109990339	109990539	+	1	NA	NA	NA	3	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.030000	0.547264	
mm_114404.1	chr13	64161747	64161947	+	1	NA	NA	NA	-19	NM_019986	56541	Mm.40989	NM_019986	ENSMUSG00000021476	Habp4	4933413D03Rik|4933428J01Rik	hyaluronic acid binding protein 4	protein-coding	0.140000	0.751244	
mm_146174.1	chr18	75367459	75367659	+	1	NA	NA	NA	194	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.135000	0.751244	
mm_149855.1	chr19	25092352	25092552	+	1	NA	NA	NA	92923	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.010000	0.487562	
mm_134364.1	chr16	17096894	17097094	-	1	NA	NA	NA	14258	NM_001252445	66053	Mm.253614	NM_144954	ENSMUSG00000022771	Ppil2	0610009L05Rik|1700016N17Rik|4921520K19Rik|4930511F14Rik|AA589416|C130078A06Rik|CYC4	peptidylprolyl isomerase (cyclophilin)-like 2	protein-coding	0.005000	0.542289	
mm_56168.1	chr6	87994111	87994311	-	1	NA	NA	NA	12528	NR_026990	434064	Mm.371796	NR_026990	ENSMUSG00000084950	Gm5577	EG434064	predicted gene 5577	ncRNA	0.035000	0.651741	
mm_54215.1	chr6	25689808	25690008	-	1	NA	NA	NA	72	NM_010338	14763	Mm.409670	NM_010338	ENSMUSG00000039904	Gpr37	AI848630|Pael-R	G protein-coupled receptor 37	protein-coding	0.065000	0.676617	
mm_92484.1	chr10	78297797	78297997	-	1	NA	NA	NA	42310	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.005000	0.572139	
mm_120189.1	chr14	61598134	61598334	+	1	NA	NA	NA	8	NM_001164220	66597	Mm.491258	NM_023233	ENSMUSG00000035235	Trim13	3110001L12Rik|CAR|LEU5|RNF77|Rfp2	tripartite motif-containing 13	protein-coding	0.010000	0.527363	-31(CTTTTTATAGCC,+,0.00),14(GCCTTTATGGAA,+,0.00)
mm_96750.1	chr11	69894932	69895132	+	1	NA	NA	NA	507	NM_153788	216859	Mm.288671	NM_153788	ENSMUSG00000001588	Acap1	Centb1	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1	protein-coding	0.005000	0.447761	-44(TGTTATTAAAGG,-,0.00)
mm_103539.1	chr11	77506608	77506808	-	1	NA	NA	NA	6565	NM_001024920	216964	Mm.341211	NM_001024920	ENSMUSG00000044328	Trp53i13	2410019G02Rik|Tp53i13	transformation related protein 53 inducible protein 13	protein-coding	0.005000	0.611940	
mm_84692.1	chr9	72393789	72393989	-	1	NA	NA	NA	-44640	NM_008613	17427	Mm.387671	NM_008613	ENSMUSG00000032221	Mns1	AW546487	meiosis-specific nuclear structural protein 1	protein-coding	0.015000	0.353234	
mm_95114.1	chr11	34077177	34077377	+	1	NA	NA	NA	30076	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.000000	0.472637	
mm_48836.1	chr5	149244637	149244837	-	1	NA	NA	NA	-20267	NM_001308462	11690	Mm.19844	NM_009663	ENSMUSG00000060063	Alox5ap	Flap	arachidonate 5-lipoxygenase activating protein	protein-coding	0.025000	0.482587	
mm_28931.1	chr3	98880583	98880783	-	1	NA	NA	NA	12547	NM_019545	56185	Mm.281874	NM_019545	ENSMUSG00000027870	Hao2	AI325478|Hao-2|Hao3|Haox3	hydroxyacid oxidase 2	protein-coding	0.000000	0.402985	-40(AGCCATTAAAGG,-,0.00)
mm_51114.1	chr6	67724783	67724983	+	1	NA	NA	NA	-159184	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.000000	0.447761	
mm_91865.1	chr10	59441775	59441975	-	1	NA	NA	NA	-96	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.035000	0.507463	
mm_99006.1	chr11	98809738	98809938	+	1	NA	NA	NA	30	NM_138660	192160	Mm.40120	NM_138660	ENSMUSG00000078676	Casc3	Btz|Mln51	cancer susceptibility candidate 3	protein-coding	0.130000	0.701493	
mm_43920.1	chr5	144768070	144768270	+	1	NA	NA	NA	-622	NM_001081362	100683	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0.120000	0.731343	
mm_46830.1	chr5	113219538	113219738	-	1	NA	NA	NA	-7271	NM_001033428	333048	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	0.010000	0.567164	
mm_110431.1	chr12	46819147	46819347	-	1	NA	NA	NA	-472	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.205000	0.855721	
mm_5130.1	chr1	9682107	9682307	-	1	NA	NA	NA	18002	NM_001290397	17864	Mm.479	NM_008651	ENSMUSG00000025912	Mybl1	A-myb|G1-419-6|repro9	myeloblastosis oncogene-like 1	protein-coding	0.005000	0.383085	
mm_26817.1	chr3	10301204	10301404	-	1	NA	NA	NA	-121	NM_029310	75497	Mm.47052	NM_029310	ENSMUSG00000027530	Fabp12	1700008G05Rik	fatty acid binding protein 12	protein-coding	0.040000	0.517413	
mm_63609.1	chr7	128203301	128203501	+	1	NA	NA	NA	-73	NR_045183	70973	Mm.441564	NR_045183	ENSMUSG00000108354	4931431B13Rik	1700108I23Rik|AA536668	RIKEN cDNA 4931431B13 gene	ncRNA	0.030000	0.547264	-100(CTCTCTATAAGG,-,0.00)
mm_61760.1	chr7	82771560	82771760	+	1	NA	NA	NA	-16016	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.050000	0.656716	
mm_23584.1	chr3	63964736	63964936	+	1	NA	NA	NA	-103	NM_015728	11416	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	0.090000	0.557214	
mm_24869.1	chr3	95950972	95951172	+	1	NA	NA	NA	21815	NM_023210	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.070000	0.606965	
mm_156640.1	chrX	157598699	157598899	+	1	NA	NA	NA	-84	NM_172307	270669	Mm.37577	NM_172307	ENSMUSG00000046873	Mbtps2	9630032G22Rik|AI662535	membrane-bound transcription factor peptidase, site 2	protein-coding	0.085000	0.492537	
mm_63110.1	chr7	122671051	122671251	+	1	NA	NA	NA	-593	NM_019430	54376	Mm.444212	NM_019430	ENSMUSG00000066189	Cacng3	-	calcium channel, voltage-dependent, gamma subunit 3	protein-coding	0.080000	0.656716	
mm_15017.1	chr2	152626845	152627045	+	1	NA	NA	NA	-63	NM_009047	19700	Mm.8752	NM_009047	ENSMUSG00000000359	Rem1	E030011C07Rik|Ras|Rem	rad and gem related GTP binding protein 1	protein-coding	0.105000	0.746269	
mm_6148.1	chr1	64928544	64928744	-	1	NA	NA	NA	28180	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.010000	0.417910	
mm_92742.1	chr10	80954629	80954829	-	1	NA	NA	NA	24638	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.020000	0.487562	
mm_58923.1	chr7	17871665	17871865	+	1	NA	NA	NA	59083	NM_025957	67084	Mm.33709	NM_025957	ENSMUSG00000023185	Ceacam14	1600021E03Rik|1600025E09Rik|AV033953	carcinoembryonic antigen-related cell adhesion molecule 14	protein-coding	0.000000	0.477612	
mm_110435.1	chr12	47833869	47834069	-	1	NA	NA	NA	467493	NR_039586	100628593		NR_039586	ENSMUSG00000092981	Mir5125	mmu-mir-5125|mu-mir-5125	microRNA 5125	ncRNA	0.010000	0.412935	
mm_97158.1	chr11	75468033	75468233	+	1	NA	NA	NA	83	NM_027249	380712	Mm.41393	NM_027249	ENSMUSG00000038217	Tlcd2	-	TLC domain containing 2	protein-coding	0.030000	0.601990	
mm_23165.1	chr3	40744928	40745128	+	1	NA	NA	NA	-585	NM_011020	18415	Mm.39330	NM_011020	ENSMUSG00000025757	Hspa4l	94kDa|AI461691|APG-1|Osp94	heat shock protein 4 like	protein-coding	0.095000	0.736318	
mm_53168.1	chr6	125342411	125342611	+	1	NA	NA	NA	-7212	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.010000	0.487562	
mm_6896.1	chr1	84696154	84696354	-	1	NA	NA	NA	-33	NM_152915	227325	Mm.292560	NM_152915	ENSMUSG00000036766	Dner	A930026D19Rik|BET|Bret	delta/notch-like EGF repeat containing	protein-coding	0.075000	0.616915	
mm_160066.1	chr7	5095575	5095775	+	1	NA	NA	NA	15440	NM_001252454	13854	Mm.3091	NM_010147	ENSMUSG00000035203	Epn1	AA269831|Ibp1	epsin 1	protein-coding	0.020000	0.601990	
mm_64961.1	chr7	16614591	16614791	-	1	NA	NA	NA	302	NM_172739	232906	Mm.28646	NM_172739	ENSMUSG00000058230	Arhgap35	6430596G11Rik|AI841135|Grlf1|mKIAA1722|p190A|p190RhoGAP	Rho GTPase activating protein 35	protein-coding	0.130000	0.815920	
mm_73251.1	chr8	104322246	104322446	+	1	NA	NA	NA	119	NM_028524	75502	Mm.232593	NM_028524	ENSMUSG00000035785	Cmtm2b	1700013O04Rik|Cklfsf22|Cklfsf2b	CKLF-like MARVEL transmembrane domain containing 2B	protein-coding	0.045000	0.577114	
mm_115356.1	chr13	112800791	112800991	+	1	NA	NA	NA	114	NM_008247	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.110000	0.721393	
mm_71750.1	chr8	65617960	65618160	+	1	NA	NA	NA	20	NM_001166372	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.045000	0.686567	
mm_8337.1	chr1	150101192	150101392	-	1	NA	NA	NA	1261	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.005000	0.457711	
mm_49668.1	chr6	31237173	31237373	+	1	NA	NA	NA	16922	NR_040261	73652	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.000000	0.437811	
mm_136781.1	chr17	10496237	10496437	+	1	NA	NA	NA	40121	NR_077238	319750	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.025000	0.507463	
mm_22102.1	chr2	169405354	169405554	-	1	NA	NA	NA	-228192	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.005000	0.507463	
mm_39172.1	chr4	155704870	155705070	-	1	NA	NA	NA	155	NM_026899	68991	Mm.294770	NM_026899	ENSMUSG00000029038	Ssu72	1190002E22Rik|1500011L16Rik|2610101M12Rik	Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)	protein-coding	0.085000	0.582090	
mm_25613.1	chr3	118430347	118430547	+	1	NA	NA	NA	-3410	NR_029551	387155		NR_029551	ENSMUSG00000065569	Mir137	Mirn137|mir-137|mmu-mir-137	microRNA 137	ncRNA	0.065000	0.641791	
mm_118583.1	chr14	20294626	20294826	+	1	NA	NA	NA	36	NM_026341	67725	Mm.317636	NM_026341	ENSMUSG00000021809	Nudt13	4933433B15Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 13	protein-coding	0.025000	0.467662	-73(GCATCTTTAAGG,-,0.00)
mm_137236.1	chr17	24425409	24425609	+	1	NA	NA	NA	-1174	NM_010023	13177	Mm.291743	NM_010023	ENSMUSG00000024132	Eci1	Dci|eci	enoyl-Coenzyme A delta isomerase 1	protein-coding	0.025000	0.552239	
mm_142398.1	chr17	45433450	45433650	-	1	NA	NA	NA	157	NM_152810	71702	Mm.28270	NM_152810	ENSMUSG00000023932	Cdc5l	1200002I02Rik|AA408004|PCDC5RP	cell division cycle 5-like (S. pombe)	protein-coding	0.105000	0.636816	
mm_24994.1	chr3	97158956	97159156	+	1	NA	NA	NA	279	NM_019800	66659	Mm.101368	NM_019800	ENSMUSG00000028093	Acp6	5730559A09Rik|ACPL1|AU022842|mPACPL1	acid phosphatase 6, lysophosphatidic	protein-coding	0.065000	0.611940	
mm_56566.1	chr6	101377909	101378109	-	1	NA	NA	NA	-112	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.105000	0.686567	
mm_132493.1	chr16	36934941	36935141	+	1	NA	NA	NA	58	NM_008225	15163	Mm.4091	NM_008225	ENSMUSG00000022831	Hcls1	AW213261|HS1	hematopoietic cell specific Lyn substrate 1	protein-coding	0.020000	0.532338	
mm_42060.1	chr5	108704481	108704681	+	1	NA	NA	NA	10352	NM_054071	116701	Mm.35691	NM_054071	ENSMUSG00000008090	Fgfrl1	FGFR5|FGFR5beta|FGFR5gamma	fibroblast growth factor receptor-like 1	protein-coding	0.010000	0.562189	
mm_117835.1	chr13	98637240	98637440	-	1	NA	NA	NA	70	NM_026685	68344	Mm.28766	NM_026685	ENSMUSG00000046082	Tmem174	0610009B10Rik|AA986094	transmembrane protein 174	protein-coding	0.045000	0.522388	
mm_57953.1	chr6	135138638	135138838	-	1	NA	NA	NA	-20455	NM_001205396	93746	Mm.49902	NM_053118	ENSMUSG00000030205	Gprc5d	-	G protein-coupled receptor, family C, group 5, member D	protein-coding	0.030000	0.447761	14(CCTTTTCTGCCG,+,0.00)
mm_146876.1	chr18	25479417	25479617	-	1	NA	NA	NA	274466	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.040000	0.398010	
mm_32183.1	chr4	101002891	101003091	+	1	NA	NA	NA	-66047	NM_183024	242570	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.040000	0.606965	
mm_20560.1	chr2	131074409	131074609	-	1	NA	NA	NA	-10695	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.025000	0.582090	
mm_155567.1	chrX	76385235	76385435	+	1	NA	NA	NA	-8015	NM_001033799	619294	Mm.423961	NM_001033799	ENSMUSG00000073085	Cldn34b4	4930428D18Rik	claudin 34B4	protein-coding	0.005000	0.437811	
mm_8149.1	chr1	136580458	136580658	-	1	NA	NA	NA	-44343	NM_177643	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.020000	0.462687	
mm_25374.1	chr3	107211256	107211456	+	1	NA	NA	NA	10376	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.462687	
mm_48136.1	chr5	137150150	137150350	-	1	NA	NA	NA	-34043	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.517413	
mm_90328.1	chr10	127078834	127079034	+	1	NA	NA	NA	27	NM_001033263	216439	Mm.336761	NM_001033263	ENSMUSG00000025422	Agap2	AGAP-2|Centg1|PIKE|cnt-g1|mKIAA0167	ArfGAP with GTPase domain, ankyrin repeat and PH domain 2	protein-coding	0.075000	0.726368	
mm_46842.1	chr5	113347554	113347754	-	1	NA	NA	NA	-9640	NM_001012726	503692	Mm.348794	NM_001012726	ENSMUSG00000053873	Aym1	-	activator of yeast meiotic promoters 1	protein-coding	0.025000	0.592040	
mm_165987.1	chr4	108101414	108101614	+	1	NA	NA	NA	14157	NR_105823	102465213		NR_105823	ENSMUSG00000098980	Mir6397	Gm28004|mmu-mir-6397	microRNA 6397	ncRNA	0.010000	0.487562	
mm_56384.1	chr6	94654520	94654720	-	1	NA	NA	NA	45525	NM_008377	16206	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.005000	0.343284	
mm_26246.1	chr3	141527601	141527801	+	1	NA	NA	NA	62137	NM_001293561	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.000000	0.432836	
mm_12576.1	chr2	73271853	73272053	+	1	NA	NA	NA	27	NM_001005343	381373	Mm.330293	NM_001005343	ENSMUSG00000068859	Sp9	-	trans-acting transcription factor 9	protein-coding	0.130000	0.706468	
mm_7802.1	chr1	131525505	131525705	-	1	NA	NA	NA	1756	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.040000	0.547264	
mm_148321.1	chr18	83828004	83828204	-	1	NA	NA	NA	258458	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|mKIAA4206|teashirt1	teashirt zinc finger family member 1	protein-coding	0.010000	0.532338	
mm_30223.1	chr3	145098950	145099150	-	1	NA	NA	NA	56	NM_178697	229933	Mm.331420	NM_178697	ENSMUSG00000036960	Clca2	4732440A06|AI586120|Clca5	chloride channel accessory 2	protein-coding	0.010000	0.492537	
mm_91189.1	chr10	21127608	21127808	-	1	NA	NA	NA	33276	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.045000	0.482587	2(GGGTATAAAAGC,-,0.00)
mm_38455.1	chr4	140581415	140581615	-	1	NA	NA	NA	67241	NM_001112723	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.050000	0.587065	
mm_66754.1	chr7	46712617	46712817	-	1	NA	NA	NA	-2066	NM_030233	78935	Mm.289866	NM_030233	ENSMUSG00000006763	Saal1	5031425D22Rik|SPACIA1	serum amyloid A-like 1	protein-coding	0.035000	0.517413	
mm_172475.1	chr7	45333714	45333914	-	1	NA	NA	NA	-34	NM_175130	68667	Mm.439890	NM_175130	ENSMUSG00000038260	Trpm4	1110030C19Rik|AW047689|LTRPC4|LTrpC-4|TRPM4B	transient receptor potential cation channel, subfamily M, member 4	protein-coding	0.090000	0.686567	
mm_111067.1	chr12	80115387	80115587	-	1	NA	NA	NA	-2474	NM_007564	12192	Mm.235132	NM_007564	ENSMUSG00000021127	Zfp36l1	AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1	zinc finger protein 36, C3H type-like 1	protein-coding	0.105000	0.641791	
mm_170565.1	chr19	46962236	46962436	-	1	NA	NA	NA	15	NM_029810	76952	Mm.40965	NM_029810	ENSMUSG00000025041	Nt5c2	2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II	5'-nucleotidase, cytosolic II	protein-coding	0.175000	0.815920	
mm_141759.1	chr17	34264905	34265105	-	1	NA	NA	NA	1778	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.125000	0.726368	
mm_39395.1	chr5	14025256	14025456	+	1	NA	NA	NA	80	NM_011348	20349	Mm.134093	NM_011348	ENSMUSG00000063531	Sema3e	6430702L12|AA408817|Semah|mKIAA0331	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E	protein-coding	0.090000	0.641791	
mm_61507.1	chr7	78719274	78719474	+	1	NA	NA	NA	-1154	NR_015542	414121	Mm.482537	NR_015542	ENSMUSG00000059146	E430016F16Rik	-	RIKEN cDNA E430016F16 gene	ncRNA	0.025000	0.502488	39(AACTATAAAAAG,-,0.00)
mm_110866.1	chr12	73546335	73546535	-	1	NA	NA	NA	-40	NM_178715	238257	Mm.251196	NM_178715	ENSMUSG00000034435	Tmem30b	9130011B11Rik	transmembrane protein 30B	protein-coding	0.130000	0.791045	
mm_126401.1	chr15	80235406	80235606	+	1	NA	NA	NA	1426	NM_178719	239555	Mm.307163	NM_178719	ENSMUSG00000022412	Mief1	A230016E22|AI452372|Smcr7l	mitochondrial elongation factor 1	protein-coding	0.005000	0.462687	-99(GGCTTTTTAGGA,-,0.00)
mm_21972.1	chr2	167339289	167339489	-	1	NA	NA	NA	9789	NM_019835	56336	Mm.200886	NM_019835	ENSMUSG00000017929	B4galt5	9430078I07Rik|AW049941|AW539721	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 5	protein-coding	0.020000	0.462687	
mm_53413.1	chr6	133105104	133105304	+	1	NA	NA	NA	-35	NM_001271583	381820	Mm.291762	NM_001163445	ENSMUSG00000072704	Smim10l1	2700089E24Rik|AI662692	small integral membrane protein 10 like 1	protein-coding	0.065000	0.582090	-34(GCCCTTTAAAGG,-,0.00),-33(CCCTTTAAAGGG,+,0.00),-33(CCCTTTAAAGGG,-,0.00),-32(CCTTTAAAGGGA,+,0.00)
mm_160101.1	chr7	18821384	18821584	-	1	NA	NA	NA	107	NM_007677	26437	Mm.302844	NM_007677	ENSMUSG00000004540	Psg17	Cea-2|Cea2|mmCGM5	pregnancy specific glycoprotein 17	protein-coding	0.000000	0.542289	
mm_107480.1	chr12	37880789	37880989	+	1	NA	NA	NA	184	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	0.045000	0.562189	
mm_72760.1	chr8	85492605	85492805	+	1	NA	NA	NA	88	NM_173866	108682	Mm.200423	NM_173866	ENSMUSG00000031700	Gpt2	4631422C05Rik|ALT2|AU014768|AU041193|C87201	glutamic pyruvate transaminase (alanine aminotransferase) 2	protein-coding	0.075000	0.656716	
mm_113084.1	chr13	23839509	23839709	+	1	NA	NA	NA	175	NM_134069	105355	Mm.27038	NM_134069	ENSMUSG00000036083	Slc17a3	AW261723|Npt4	solute carrier family 17 (sodium phosphate), member 3	protein-coding	0.000000	0.462687	
mm_108783.1	chr12	90239165	90239365	+	1	NA	NA	NA	426782	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.015000	0.308458	
mm_59342.1	chr7	25476294	25476494	+	1	NA	NA	NA	1231	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.040000	0.447761	
mm_110605.1	chr12	56536515	56536715	-	1	NA	NA	NA	293	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.080000	0.587065	
mm_140289.1	chr17	85465406	85465606	+	1	NA	NA	NA	152890	NR_038084	100043902	Mm.150838	NR_015385	ENSMUSG00000093460	Six3os1	D17Mgi26|E130112H22Rik|Rncr1|Six3os	SIX homeobox 3, opposite strand 1	ncRNA	0.030000	0.636816	
mm_129005.1	chr15	74878287	74878487	-	1	NA	NA	NA	3317	NM_025929	67038	Mm.154566	NM_025929	ENSMUSG00000063522	2010109I03Rik	Ly6m	RIKEN cDNA 2010109I03 gene	protein-coding	0.005000	0.333333	33(TCCTTTTAAAAC,-,0.00),34(CCTTTTAAAACT,+,0.00),35(CTTTTAAAACTG,+,0.00)
mm_121876.1	chr14	21050620	21050820	-	1	NA	NA	NA	1722	NM_018829	55946	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.005000	0.378109	-69(CCCTTTTAATGC,-,0.00)
mm_152909.1	chr19	27257317	27257517	-	1	NA	NA	NA	40397	NM_001161420	22359	Mm.4141	NM_013703	ENSMUSG00000024924	Vldlr	AA408956|AI451093|AW047288	very low density lipoprotein receptor	protein-coding	0.005000	0.368159	
mm_158863.1	chrY	2174699	2174899	+	1	NA	NA	NA	-4390	NM_009571	22768	Mm.411381	NM_009571	ENSMUSG00000000103	Zfy2	Zfy-2	zinc finger protein 2, Y-linked	protein-coding	0.000000	0.288557	-94(GCCTATTTAAGC,-,0.00)
mm_42781.1	chr5	121399747	121399947	+	1	NA	NA	NA	1865	NM_172722	231713	Mm.33919	NM_172722	ENSMUSG00000042719	Naa25	4833422K13Rik|A630046C11|AI450868|C330023M02Rik|Mdm20	N(alpha)-acetyltransferase 25, NatB auxiliary subunit	protein-coding	0.015000	0.437811	
mm_66647.1	chr7	45666243	45666443	-	1	NA	NA	NA	51	NM_018876	14344	Mm.290046	NM_018876	ENSMUSG00000055978	Fut2	-	fucosyltransferase 2	protein-coding	0.030000	0.572139	
mm_12463.1	chr2	71356550	71356750	+	1	NA	NA	NA	10904	NM_172436	78830	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.020000	0.422886	-57(TGGTATTAAAGG,-,0.00)
mm_104020.1	chr11	85769033	85769233	-	1	NA	NA	NA	6547	NR_046194	78420	Mm.488197	NR_046194	ENSMUSG00000085514	Bcas3os2	9530048J24Rik	breast carcinoma amplified sequence 3 opposite strand 2	ncRNA	0.020000	0.502488	
mm_55297.1	chr6	54760133	54760333	-	1	NA	NA	NA	-56683	NM_199143	387524	Mm.286149	NM_199143	ENSMUSG00000058446	Znrf2	1190002C14Rik|AU044205|D6Ertd365e	zinc and ring finger 2	protein-coding	0.040000	0.497512	
mm_23730.1	chr3	69027582	69027782	+	1	NA	NA	NA	17060	NM_025863	66949	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.030000	0.457711	
mm_61340.1	chr7	68279106	68279306	+	1	NA	NA	NA	-2612	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.015000	0.557214	
mm_151555.1	chr19	59459022	59459222	+	1	NA	NA	NA	432	NM_010132	13797	Mm.245394	NM_010132	ENSMUSG00000043969	Emx2	Pdo	empty spiracles homeobox 2	protein-coding	0.095000	0.681592	
mm_78993.1	chr9	45403103	45403303	+	1	NA	NA	NA	65	NM_052823	11936	Mm.22742	NM_007503	ENSMUSG00000059412	Fxyd2	Atp1g1	FXYD domain-containing ion transport regulator 2	protein-coding	0.005000	0.611940	
mm_39806.1	chr5	30623741	30623941	+	1	NA	NA	NA	-24095	NR_049199	100885838		NR_049199	ENSMUSG00000093710	Mir5625	Gm23930|mmu-mir-5625	microRNA 5625	ncRNA	0.010000	0.407960	
mm_168519.1	chr11	58199547	58199747	+	1	NA	NA	NA	91	NM_018738	16145	Mm.33902	NM_018738	ENSMUSG00000078853	Igtp	AW558444|Irgm3	interferon gamma induced GTPase	protein-coding	0.020000	0.611940	
mm_31658.1	chr4	59884540	59884740	+	1	NA	NA	NA	30416	NM_021053	30936	Mm.284433	NM_021053	ENSMUSG00000028386	Slc46a2	5430429N04Rik|Ly110|TSO-1C12|Tscot	solute carrier family 46, member 2	protein-coding	0.015000	0.492537	
mm_100187.1	chr11	116678155	116678355	+	1	NA	NA	NA	3658	NR_028570	100216538		NR_028570	ENSMUSG00000065094	Snord1a	snR38	small nucleolar RNA, C/D box 1A	snoRNA	0.005000	0.432836	
mm_119563.1	chr14	48878785	48878985	+	1	NA	NA	NA	12	NR_033783	66770	Mm.136954	NR_033783		4933429O19Rik	1700031B11Rik	RIKEN cDNA 4933429O19 gene	ncRNA	0.025000	0.497512	
mm_43582.1	chr5	137746801	137747001	+	1	NA	NA	NA	932	NM_029805	78829	Mm.286399	NM_023910	ENSMUSG00000029723	Tsc22d4	0610009M14Rik|1700023B23Rik|AI415410|Thg-1pit|Tilz2	TSC22 domain family, member 4	protein-coding	0.030000	0.582090	
mm_27663.1	chr3	65302660	65302860	-	1	NA	NA	NA	-75	NR_126080	102637797	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	0.015000	0.482587	
mm_38775.1	chr4	148038460	148038660	-	1	NA	NA	NA	253	NM_011929	26372	Mm.89987	NM_011929	ENSMUSG00000029016	Clcn6	AI850629|Clc6	chloride channel, voltage-sensitive 6	protein-coding	0.080000	0.691542	
mm_112758.1	chr13	19345862	19346062	+	1	NA	NA	NA	49851	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.422886	
mm_54846.1	chr6	42587080	42587280	-	1	NA	NA	NA	10192	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.005000	0.343284	70(GTTTAAATAGAG,+,0.00)
mm_81259.1	chr9	107997893	107998093	+	1	NA	NA	NA	-4655	NM_013785	27399	Mm.276155	NM_013785	ENSMUSG00000032594	Ip6k1	1200016D08Rik|AU022776|Ihpk1|InsP6|InsP6k1|Itpk6	inositol hexaphosphate kinase 1	protein-coding	0.010000	0.537313	
mm_164517.1	chr16	96434483	96434683	-	1	NA	NA	NA	9031	NM_008405	16415	Mm.12872	NM_008405	ENSMUSG00000000157	Itgb2l	5033406G21Rik|pactolus	integrin beta 2-like	protein-coding	0.000000	0.542289	
mm_25425.1	chr3	107877014	107877214	+	1	NA	NA	NA	-116	NM_133867	99662	Mm.108491	NM_133867	ENSMUSG00000040600	Eps8l3	AI504489|Eps8r3	EPS8-like 3	protein-coding	0.015000	0.587065	
mm_89673.1	chr10	97507661	97507861	+	1	NA	NA	NA	25430	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.025000	0.457711	
mm_72120.1	chr8	71686698	71686898	+	1	NA	NA	NA	-2454	NM_013564	16336	Mm.476857	NM_013564	ENSMUSG00000079019	Insl3	Rlf|Rlnl	insulin-like 3	protein-coding	0.030000	0.592040	
mm_135088.1	chr16	34542064	34542264	-	1	NA	NA	NA	-28137	NM_177357	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.005000	0.358209	
mm_76676.1	chr8	93813435	93813635	-	1	NA	NA	NA	20	NR_026888	75809	Mm.443272	NM_029449		4930488L21Rik	4930452J22Rik	RIKEN cDNA 4930488L21 gene	ncRNA	0.095000	0.671642	
mm_156104.1	chrX	113724237	113724437	+	1	NA	NA	NA	426081	NM_001142570	93837	Mm.79760	NM_033605	ENSMUSG00000025592	Dach2	9430028N04Rik	dachshund 2 (Drosophila)	protein-coding	0.000000	0.452736	
mm_156866.1	chrX	164437946	164438146	+	1	NA	NA	NA	1052	NM_001313737	68854	Mm.33225	NM_026853	ENSMUSG00000031382	Asb11	1110067L12Rik|1600009D24Rik	ankyrin repeat and SOCS box-containing 11	protein-coding	0.015000	0.398010	
mm_16264.1	chr2	173522529	173522729	+	1	NA	NA	NA	37	NM_028158	72221	Mm.46132	NM_028158	ENSMUSG00000027518	1700021F07Rik	-	RIKEN cDNA 1700021F07 gene	protein-coding	0.070000	0.582090	
mm_58155.1	chr6	142386964	142387164	-	1	NA	NA	NA	23	NM_001204906	19691	Mm.27407	NM_023042	ENSMUSG00000030243	Recql	RecQ1	RecQ protein-like	protein-coding	0.110000	0.671642	
mm_172248.1	chr6	69417379	69417579	-	1	NA	NA	NA	-90305	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.005000	0.378109	-92(GTGTTTATAAGC,-,0.00)
mm_93472.1	chr10	111171281	111171481	-	1	NA	NA	NA	6579	NM_175489	237542	Mm.220204	NM_175489	ENSMUSG00000020189	Osbpl8	AA536976|AA536995|C730029P18Rik|D330025H14Rik|ORP-8	oxysterol binding protein-like 8	protein-coding	0.010000	0.497512	
mm_111511.1	chr12	99610191	99610391	-	1	NA	NA	NA	17683	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.045000	0.472637	
mm_45277.1	chr5	64865379	64865579	-	1	NA	NA	NA	61956	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.010000	0.542289	
mm_162234.1	chrX	152239968	152240168	+	1	NA	NA	NA	6841	NM_013668	20591	Mm.142655	NM_013668	ENSMUSG00000025332	Kdm5c	D930009K15Rik|Jarid1c|Smcx|mKIAA0234	lysine (K)-specific demethylase 5C	protein-coding	0.030000	0.492537	
mm_33530.1	chr4	130932253	130932453	+	1	NA	NA	NA	-12032	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.000000	0.452736	
mm_168516.1	chr11	57448998	57449198	+	1	NA	NA	NA	69546	NM_001168667	67726	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	0.045000	0.557214	
mm_96137.1	chr11	60931918	60932118	+	1	NA	NA	NA	-39	NM_008928	26397	Mm.18494	NM_008928	ENSMUSG00000018932	Map2k3	AW212142|MEK3|MKK3|Prkmk3|mMKK3b	mitogen-activated protein kinase kinase 3	protein-coding	0.125000	0.701493	-37(CCTTTTCAGGCG,+,0.00)
mm_98897.1	chr11	97994954	97995154	+	1	NA	NA	NA	1119	NM_207231	217151	Mm.277896	NM_207231	ENSMUSG00000038352	Arl5c	Arl12|BC065791	ADP-ribosylation factor-like 5C	protein-coding	0.005000	0.512438	
mm_116740.1	chr13	51763291	51763491	-	1	NA	NA	NA	30356	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.015000	0.527363	
mm_35308.1	chr4	25242728	25242928	-	1	NA	NA	NA	48	NM_021318	57756	Mm.87325	NM_021318	ENSMUSG00000028259	Fhl5	1700027G07Rik|Act	four and a half LIM domains 5	protein-coding	0.010000	0.457711	
mm_124806.1	chr15	8832227	8832427	+	1	NA	NA	NA	-121520	NM_148938	20512	Mm.204834	NM_148938	ENSMUSG00000005360	Slc1a3	AI504299|B430115D02Rik|Eaat1|GLAST|GLAST-1|GLU-T|GluT-1|Gmt1|MGluT1	solute carrier family 1 (glial high affinity glutamate transporter), member 3	protein-coding	0.015000	0.512438	
mm_141417.1	chr17	29430447	29430647	-	1	NA	NA	NA	-60498	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.035000	0.517413	
mm_21067.1	chr2	152805988	152806188	-	1	NA	NA	NA	24629	NM_001289716	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.000000	0.427861	
mm_164328.1	chr16	7069920	7070120	+	1	NA	NA	NA	185	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.020000	0.487562	-34(CTCCATTTAAAG,-,0.00),-32(CCATTTAAAGCA,+,0.00)
mm_115281.1	chr13	111807669	111807869	+	1	NA	NA	NA	1214	NM_011945	26401	Mm.15918	NM_011945	ENSMUSG00000021754	Map3k1	MAPKKK1|MEKK1|Mekk	mitogen-activated protein kinase kinase kinase 1	protein-coding	0.065000	0.577114	
mm_138191.1	chr17	34269121	34269321	+	1	NA	NA	NA	5994	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.010000	0.517413	
mm_80006.1	chr9	67759326	67759526	+	1	NA	NA	NA	-11	NM_001081314	75697	Mm.105353	NM_001081314	ENSMUSG00000091956	C2cd4b	3300001A09Rik|Fam148b	C2 calcium-dependent domain containing 4B	protein-coding	0.050000	0.542289	
mm_31680.1	chr4	62295064	62295264	+	1	NA	NA	NA	3617	NM_001290518	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.010000	0.422886	
mm_27824.1	chr3	79082416	79082616	-	1	NA	NA	NA	62371	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.010000	0.422886	
mm_110702.1	chr12	69297140	69297340	-	1	NA	NA	NA	559	NM_027117	69554	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0.065000	0.587065	
mm_4894.1	chr1	189728154	189728354	+	1	NA	NA	NA	-14	NM_008976	19250	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|OTTMUSG00000022087|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	0.120000	0.786070	
mm_144863.1	chr18	36725678	36725878	+	1	NA	NA	NA	1037	NM_009841	12475	Mm.3460	NM_009841	ENSMUSG00000051439	Cd14	-	CD14 antigen	protein-coding	0.070000	0.601990	
mm_139330.1	chr17	49004089	49004289	+	1	NA	NA	NA	71607	NM_027452	70530	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0.000000	0.427861	
mm_104924.1	chr11	99858662	99858862	-	1	NA	NA	NA	845	NM_001205030	432600	Mm.60039	NM_001205030	ENSMUSG00000069717	Gm11568	OTTMUSG00000002207	predicted gene 11568	protein-coding	0.010000	0.407960	
mm_105217.1	chr11	102185120	102185320	-	1	NA	NA	NA	36	NM_172947	268490	Mm.259079	NM_172947	ENSMUSG00000020922	Lsm12	1110032E16Rik|1110059P07|2600001B17Rik	LSM12 homolog	protein-coding	0.155000	0.756219	
mm_45059.1	chr5	41828744	41828944	-	1	NA	NA	NA	15471	NM_001310601	665775	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0.030000	0.407960	
mm_63368.1	chr7	127091295	127091495	+	1	NA	NA	NA	-41	NM_178901	101602	Mm.490357	NM_178901	ENSMUSG00000045165	AI467606	-	expressed sequence AI467606	protein-coding	0.045000	0.606965	
mm_17711.1	chr2	32385702	32385902	-	1	NA	NA	NA	1937	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.020000	0.472637	
mm_81381.1	chr9	108926514	108926714	+	1	NA	NA	NA	-10034	NM_025407	22273	Mm.335460	NM_025407	ENSMUSG00000025651	Uqcrc1	1110032G10Rik	ubiquinol-cytochrome c reductase core protein 1	protein-coding	0.010000	0.467662	
mm_125563.1	chr15	58933705	58933905	+	1	NA	NA	NA	-5	NM_023172	66218	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.115000	0.701493	
mm_120734.1	chr14	73165024	73165224	+	1	NA	NA	NA	22339	NR_033185	105670	Mm.280068	NM_134083	ENSMUSG00000022106	Rcbtb2	2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2	protein-coding	0.005000	0.388060	
mm_119625.1	chr14	51129029	51129229	+	1	NA	NA	NA	61	NM_030098	78416	Mm.103835	NM_030098	ENSMUSG00000021880	Rnase6	9530043P15Rik|BB119466	ribonuclease, RNase A family, 6	protein-coding	0.015000	0.542289	
mm_115369.1	chr13	113032099	113032299	+	1	NA	NA	NA	-3180	NM_001281487	238896		NM_001281487	ENSMUSG00000078926	Cdc20b	EG238896|EG622422	cell division cycle 20B	protein-coding	0.105000	0.701493	
mm_6084.1	chr1	63095898	63096098	-	1	NA	NA	NA	18269	NM_001081436	227195	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584|OTTMUSG00000002594	INO80 complex subunit D	protein-coding	0.005000	0.472637	
mm_69615.1	chr7	137304297	137304497	-	1	NA	NA	NA	10048	NM_001113415	13593	Mm.258708	NM_010096	ENSMUSG00000010476	Ebf3	3110018A08Rik|O/E-2|mKIAA4201	early B cell factor 3	protein-coding	0.010000	0.417910	
mm_36626.1	chr4	91376243	91376443	-	1	NA	NA	NA	148	NM_001347149	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)	protein-coding	0.045000	0.472637	-34(CCTTTTAAGACG,+,0.00)
mm_66792.1	chr7	47132249	47132449	-	1	NA	NA	NA	249	NM_001163565	19259	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0.120000	0.701493	
mm_125375.1	chr15	40162523	40162723	+	1	NA	NA	NA	28258	NM_001256056	328531	Mm.60703	NM_001256056	ENSMUSG00000094112	9330182O14Rik	-	RIKEN cDNA 9330182O14 gene	protein-coding	0.030000	0.472637	
mm_63983.1	chr7	140036319	140036519	+	1	NA	NA	NA	28	NM_027201	69752	Mm.200818	NM_027201	ENSMUSG00000025470	Zfp511	2410004P19Rik|C86579|Znf511	zinc finger protein 511	protein-coding	0.115000	0.706468	
mm_165014.1	chr19	28995088	28995288	+	1	NA	NA	NA	4836	NM_025950	67072	Mm.78875	NM_025950	ENSMUSG00000024780	Cdc37l1	2700033A15Rik|BB159850|Cdc37l|Harc	cell division cycle 37-like 1	protein-coding	0.025000	0.512438	
mm_13751.1	chr2	118125768	118125968	+	1	NA	NA	NA	13992	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.015000	0.402985	
mm_40926.1	chr5	76140618	76140818	+	1	NA	NA	NA	445	NM_020611	57357	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	0.050000	0.572139	
mm_52819.1	chr6	121356309	121356509	+	1	NA	NA	NA	9712	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.005000	0.502488	-87(GCTTAAAGAGGC,+,0.00)
mm_47449.1	chr5	123524046	123524246	-	1	NA	NA	NA	18	NM_023232	66593	Mm.46716	NM_023232	ENSMUSG00000029433	Diablo	0610041G12Rik|1700006L01Rik|AU040403|Smac	diablo, IAP-binding mitochondrial protein	protein-coding	0.125000	0.686567	
mm_66512.1	chr7	45102991	45103191	-	1	NA	NA	NA	731	NM_010189	14132	Mm.3303	NM_010189	ENSMUSG00000003420	Fcgrt	FcRn	Fc receptor, IgG, alpha chain transporter	protein-coding	0.030000	0.616915	
mm_155733.1	chrX	96165946	96166146	+	1	NA	NA	NA	70001	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.030000	0.552239	
mm_132744.1	chr16	44139761	44139961	+	1	NA	NA	NA	52	NM_028108	72117	Mm.278726	NM_028108	ENSMUSG00000022698	Naa50	2600005K24Rik|2810441M03Rik|AW112078|Mak3|Mak3p|Nat13|Nat5|San	N(alpha)-acetyltransferase 50, NatE catalytic subunit	protein-coding	0.180000	0.786070	
mm_162270.1	chr1	10232952	10233152	+	1	NA	NA	NA	-382	NM_001102430	211673	Mm.229141	NM_001102430	ENSMUSG00000067851	Arfgef1	ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200	ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited)	protein-coding	0.165000	0.771144	
mm_149788.1	chr19	23140892	23141092	+	1	NA	NA	NA	-234	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.145000	0.701493	1(CCTTTTAAATGT,+,0.00)
mm_33681.1	chr4	133369606	133369806	+	1	NA	NA	NA	-66	NM_016981	20544	Mm.4312	NM_016981	ENSMUSG00000028854	Slc9a1	AW554487|Apnh|Mir5122|Nhe1|mir-5122|swe	solute carrier family 9 (sodium/hydrogen exchanger), member 1	protein-coding	0.080000	0.587065	33(GCCTATAAATGG,-,0.00)
mm_166989.1	chr7	45922757	45922957	-	1	NA	NA	NA	-1431	NM_010129	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.010000	0.522388	
mm_25096.1	chr3	101081635	101081835	+	1	NA	NA	NA	28431	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding	0.035000	0.527363	-33(AACCTTAAAAGG,-,0.00),-31(CCTTAAAAGGGA,+,0.00)
mm_19726.1	chr2	104493274	104493474	-	1	NA	NA	NA	1115	NM_010434	15259	Mm.257925	NM_010434	ENSMUSG00000027177	Hipk3	DYRK6|FIST3|PKY|mir-1902	homeodomain interacting protein kinase 3	protein-coding	0.125000	0.681592	
mm_39863.1	chr5	30969679	30969879	+	1	NA	NA	NA	1102	NM_053085	69852	Mm.57874	NM_053085	ENSMUSG00000006642	Tcf23	2010002O16Rik|Out|bHLHa24	transcription factor 23	protein-coding	0.010000	0.472637	
mm_133063.1	chr16	58498614	58498814	+	1	NA	NA	NA	24598	NM_018784	54613	Mm.212742	NM_018784	ENSMUSG00000022747	St3gal6	1700023B24Rik|AI930218|AW552396|Siat10|St3galVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	protein-coding	0.020000	0.437811	
mm_104693.1	chr11	97855449	97855649	-	1	NA	NA	NA	14769	NM_001080935	68127	Mm.110270	NM_001080935	ENSMUSG00000050538	B230217C12Rik	AI840637	RIKEN cDNA B230217C12 gene	protein-coding	0.010000	0.457711	
mm_47114.1	chr5	119583625	119583825	-	1	NA	NA	NA	-3367	NR_045702	100993	Mm.381453	NR_045702	ENSMUSG00000087516	AW549542	-	expressed sequence AW549542	ncRNA	0.005000	0.457711	
mm_73558.1	chr8	109075116	109075316	+	1	NA	NA	NA	-6	NR_126329	628686	Mm.203332	NR_126329	ENSMUSG00000097393	D030068K23Rik	-	RIKEN cDNA D030068K23 gene	ncRNA	0.040000	0.562189	
mm_8667.1	chr1	156666724	156666924	-	1	NA	NA	NA	7515	NM_023141	30935	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.035000	0.641791	
mm_21689.1	chr2	164443219	164443419	-	1	NA	NA	NA	-131	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.065000	0.696517	
mm_155397.1	chrX	72957732	72957932	+	1	NA	NA	NA	-29507	NM_009549	22673	Mm.1161	NM_009549	ENSMUSG00000031351	Zfp185	P1|Znf185	zinc finger protein 185	protein-coding	0.000000	0.442786	
mm_84301.1	chr9	63399002	63399202	-	1	NA	NA	NA	142	NM_027090	69478	Mm.113942	NM_027090	ENSMUSG00000032403	2300009A05Rik	-	RIKEN cDNA 2300009A05 gene	protein-coding	0.110000	0.716418	
mm_123817.1	chr14	70536006	70536206	-	1	NA	NA	NA	5285	NM_145219	213469	Mm.41708	NM_145219	ENSMUSG00000033595	Lgi3	AI841179|AW049851	leucine-rich repeat LGI family, member 3	protein-coding	0.025000	0.532338	
mm_68423.1	chr7	109752150	109752350	-	1	NA	NA	NA	13	NM_020050	56786	Mm.240668	NM_020050	ENSMUSG00000031021	Tmem9b	2310004K06Rik|AW539847|D7H11orf15|ICRFP703B1614Q5.3	TMEM9 domain family, member B	protein-coding	0.145000	0.746269	
mm_137656.1	chr17	28575692	28575892	+	1	NA	NA	NA	73	NM_026571	328789	Mm.284760	NM_026571	ENSMUSG00000062252	Lhfpl5	9330179O15Rik|Tmhs|hscy	lipoma HMGIC fusion partner-like 5	protein-coding	0.040000	0.626866	
mm_68884.1	chr7	126447859	126448059	-	1	NA	NA	NA	15114	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.015000	0.597015	
mm_55088.1	chr6	49217871	49218071	-	1	NA	NA	NA	-3017	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.105000	0.661692	
mm_156195.1	chrX	134187398	134187598	+	1	NA	NA	NA	-3	NM_028947	74448	Mm.159203	NM_028947	ENSMUSG00000052549	Arl13a	4933422M21Rik|Arl13	ADP-ribosylation factor-like 13A	protein-coding	0.005000	0.383085	19(CCCTTTAAGTGG,-,0.00),59(AGGCTTAAAAGC,-,0.00)
mm_10592.1	chr2	18672399	18672599	+	1	NA	NA	NA	37	NM_147778	12238	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0.130000	0.681592	
mm_91296.1	chr10	24915584	24915784	-	1	NA	NA	NA	5020	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.020000	0.492537	
mm_63570.1	chr7	128117318	128117518	+	1	NA	NA	NA	-12150	NM_021334	16411	Mm.22378	NM_021334	ENSMUSG00000030789	Itgax	AI449405|Cd11c|Cr4|N418	integrin alpha X	protein-coding	0.020000	0.492537	
mm_98554.1	chr11	95119727	95119927	+	1	NA	NA	NA	-290	NM_010055	13393	Mm.5194	NM_010055	ENSMUSG00000001510	Dlx3	AV237891|Dlx-3	distal-less homeobox 3	protein-coding	0.025000	0.557214	
mm_80544.1	chr9	81632249	81632449	+	1	NA	NA	NA	-9	NR_040397	319405	Mm.246494	NR_040393	ENSMUSG00000097466	D430036J16Rik	-	RIKEN cDNA D430036J16 gene	ncRNA	0.055000	0.577114	
mm_29179.1	chr3	106528066	106528266	-	1	NA	NA	NA	-19632	NM_001286986	67171	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0.005000	0.323383	
mm_132016.1	chr16	25948209	25948409	+	1	NA	NA	NA	146393	NM_001127264	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.005000	0.462687	
mm_62903.1	chr7	116665635	116665835	+	1	NA	NA	NA	161366	NM_001130479	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.040000	0.557214	
mm_144398.1	chr18	20741069	20741269	+	1	NA	NA	NA	5235	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.030000	0.507463	
mm_79663.1	chr9	59657523	59657723	+	1	NA	NA	NA	1255	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.035000	0.512438	83(GGCTATAAAGAC,-,0.00)
mm_155867.1	chrX	101384204	101384404	+	1	NA	NA	NA	572	NM_001302497	14618	Mm.21198	NM_008124	ENSMUSG00000047797	Gjb1	Cnx32|Cx32|connexin-32	gap junction protein, beta 1	protein-coding	0.035000	0.552239	
mm_24487.1	chr3	92194227	92194427	+	1	NA	NA	NA	-21508	NM_001164787	100303744	Mm.429851	NM_001164787	ENSMUSG00000068893	Sprr2a2	-	small proline-rich protein 2A2	protein-coding	0.005000	0.452736	-34(GGCCTTATAAAA,-,0.00),-32(CCTTATAAAAGA,+,0.00),-32(CCTTATAAAAGA,-,0.00)
mm_15821.1	chr2	164563322	164563522	+	1	NA	NA	NA	706	NM_026323	67701	Mm.27289	NM_026323	ENSMUSG00000017723	Wfdc2	1600023A02Rik|HE4|WAP5	WAP four-disulfide core domain 2	protein-coding	0.055000	0.631841	
mm_110229.1	chr12	28886314	28886514	-	1	NA	NA	NA	134586	NM_201357	380752	Mm.273724	NM_201357	ENSMUSG00000036613	Tssc1	D12Ertd604e|Eipr1	tumor suppressing subtransferable candidate 1	protein-coding	0.030000	0.452736	
mm_16469.1	chr2	180710147	180710347	+	1	NA	NA	NA	21	NM_001289652	76425	Mm.41464	NM_029607	ENSMUSG00000027573	Gid8	2310003C23Rik|4833420G11Rik|AI451474|Twa1	GID complex subunit 8	protein-coding	0.150000	0.756219	
mm_157013.1	chrX	7671306	7671506	-	1	NA	NA	NA	-16	NM_019755	18824	Mm.18565	NM_019755	ENSMUSG00000031146	Plp2	mIMA4	proteolipid protein 2	protein-coding	0.085000	0.696517	
mm_100488.1	chr11	120361425	120361625	+	1	NA	NA	NA	-9	NM_172802	238021	Mm.481403	NM_172802	ENSMUSG00000025380	Fscn2	A930022G03|Ahl8|C630046B20Rik	fascin actin-bundling protein 2	protein-coding	0.040000	0.611940	
mm_81274.1	chr9	108110880	108111080	+	1	NA	NA	NA	-16500	NM_146226	235606	Mm.219639	NM_146226	ENSMUSG00000032590	Apeh	-	acylpeptide hydrolase	protein-coding	0.055000	0.691542	
mm_8334.1	chr1	150099491	150099691	-	1	NA	NA	NA	283	NR_015466	320019	Mm.353072	NR_015466	ENSMUSG00000097028	Ptgs2os	7530420F21Rik	prostaglandin-endoperoxide synthase 2, opposite strand	ncRNA	0.035000	0.512438	
mm_141548.1	chr17	32036222	32036422	-	1	NA	NA	NA	160	NM_028244	72462	Mm.102761	NM_028244	ENSMUSG00000058392	Rrp1b	2600005C20Rik|D030064A17|Kiaa0179|mKIAA0179	ribosomal RNA processing 1 homolog B (S. cerevisiae)	protein-coding	0.120000	0.691542	
mm_153803.1	chr19	46044884	46045084	-	1	NA	NA	NA	227	NM_001113408	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.125000	0.776119	
mm_150052.1	chr19	29380458	29380658	+	1	NA	NA	NA	13120	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.045000	0.532338	
mm_7283.1	chr1	97661882	97662082	-	1	NA	NA	NA	36	NM_133825	52392	Mm.12309	NM_133825	ENSMUSG00000044768	D1Ertd622e	AI987691|AW047450	DNA segment, Chr 1, ERATO Doi 622, expressed	protein-coding	0.145000	0.796020	
mm_170232.1	chr17	8384593	8384793	-	1	NA	NA	NA	4775	NR_045795	100504601	Mm.365131	NR_045795	ENSMUSG00000097796	Gm16702	AU016609	predicted gene, 16702	ncRNA	0.010000	0.487562	
mm_65038.1	chr7	18561845	18562045	-	1	NA	NA	NA	5360	NM_001037168	545925	Mm.440302	NM_001037168	ENSMUSG00000070797	Psg27	EG545925|cea15	pregnancy-specific glycoprotein 27	protein-coding	0.020000	0.447761	
mm_13137.1	chr2	92058619	92058819	+	1	NA	NA	NA	-34549	NM_011957	26427	Mm.10353	NM_011957	ENSMUSG00000027230	Creb3l1	Oasis	cAMP responsive element binding protein 3-like 1	protein-coding	0.080000	0.631841	
mm_132061.1	chr16	29845862	29846062	+	1	NA	NA	NA	133162	NR_037689	328657	Mm.425982	NM_001033403		Gm1968	-	predicted gene 1968	ncRNA	0.015000	0.442786	-31(CTTTTTAAAACG,+,0.00)
mm_86407.1	chr9	123986674	123986874	-	1	NA	NA	NA	-8366	NM_007718	12770	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0.010000	0.492537	
mm_48031.1	chr5	136246465	136246665	-	1	NA	NA	NA	-1625	NM_018825	23921	Mm.425294	NM_018825	ENSMUSG00000005057	Sh2b2	Aps	SH2B adaptor protein 2	protein-coding	0.005000	0.492537	
mm_151400.1	chr19	56461561	56461761	+	1	NA	NA	NA	24	NM_172641	226245	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	0.025000	0.547264	
mm_158327.1	chrX	133961538	133961738	-	1	NA	NA	NA	20174	NM_001290718	27359	Mm.38674	NM_013757	ENSMUSG00000031255	Sytl4	Gph|Slp4	synaptotagmin-like 4	protein-coding	0.020000	0.452736	
mm_111363.1	chr12	87147390	87147590	-	1	NA	NA	NA	-217	NM_001252556	14874	Mm.29652	NM_010363	ENSMUSG00000021033	Gstz1	MAAI	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	protein-coding	0.100000	0.696517	
mm_112658.1	chr13	16026806	16027006	+	1	NA	NA	NA	15055	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.015000	0.517413	
mm_88055.1	chr10	67547775	67547975	+	1	NA	NA	NA	1080	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.045000	0.611940	
mm_147484.1	chr18	47248240	47248440	-	1	NA	NA	NA	120528	NM_018744	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.025000	0.592040	
mm_49862.1	chr6	38551420	38551620	+	1	NA	NA	NA	186	NM_001170848	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.120000	0.701493	
mm_83200.1	chr9	41157676	41157876	-	1	NA	NA	NA	-282	NM_176860	72828	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0.045000	0.577114	-25(CGCTTTAAGAGA,-,0.00),-24(GCTTTAAGAGAG,+,0.00)
mm_159427.1	chr3	108739464	108739664	+	1	NA	NA	NA	-94	NM_177859	329738	Mm.72322	NM_177859	ENSMUSG00000049565	Aknad1	4921525H12Rik	AKNA domain containing 1	protein-coding	0.005000	0.393035	
mm_141804.1	chr17	34535896	34536096	-	1	NA	NA	NA	-18644	NM_030747	624681	Mm.471592	NM_030747	ENSMUSG00000092618	Btnl6	EG624681|Gm6519|NG13	butyrophilin-like 6	protein-coding	0.010000	0.472637	
mm_105721.1	chr11	109011619	109011819	-	1	NA	NA	NA	91370	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.050000	0.577114	
mm_92281.1	chr10	71285140	71285340	-	1	NA	NA	NA	22	NM_145420	216080	Mm.270530	NM_145420	ENSMUSG00000019927	Ube2d1	UBCH5	ubiquitin-conjugating enzyme E2D 1	protein-coding	0.135000	0.751244	
mm_74498.1	chr8	7002677	7002877	-	1	NA	NA	NA	1657996	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.040000	0.512438	
mm_47043.1	chr5	116024308	116024508	-	1	NA	NA	NA	20	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.120000	0.676617	
mm_111521.1	chr12	100178911	100179111	-	1	NA	NA	NA	-8957	NR_045282	100038378	Mm.387075	NR_045282	ENSMUSG00000072884	Gm10433	ENSMUSG00000072884	predicted gene 10433	ncRNA	0.010000	0.402985	
mm_108378.1	chr12	80859011	80859211	+	1	NA	NA	NA	65336	NR_033786	67340	Mm.386790	NR_033786	ENSMUSG00000101912	1700052I22Rik	-	RIKEN cDNA 1700052I22 gene	ncRNA	0.005000	0.388060	
mm_113408.1	chr13	33964668	33964868	+	1	NA	NA	NA	109	NM_001163241	18105	Mm.264036	NM_020282	ENSMUSG00000046949	Nqo2	NMO2|Nmor2|Ox2	NAD(P)H dehydrogenase, quinone 2	protein-coding	0.045000	0.621891	
mm_24244.1	chr3	89136483	89136683	+	1	NA	NA	NA	-40	NM_001099779	18770	Mm.383180	NM_013631	ENSMUSG00000041237	Pklr	Pk-1|Pk1|R-PK	pyruvate kinase liver and red blood cell	protein-coding	0.020000	0.557214	
mm_168932.1	chr12	66396171	66396371	+	1	NA	NA	NA	-111870	NM_001162933	238217	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding	0.005000	0.407960	
mm_17705.1	chr2	32384725	32384925	-	1	NA	NA	NA	-2910	NM_198001	73737	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0.010000	0.562189	
mm_89456.1	chr10	93161019	93161219	+	1	NA	NA	NA	243	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.145000	0.786070	
mm_152930.1	chr19	28283799	28283999	-	1	NA	NA	NA	-272733	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.015000	0.527363	
mm_8542.1	chr1	155098639	155098839	-	1	NA	NA	NA	897	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.115000	0.661692	
mm_50808.1	chr6	54313971	54314171	+	1	NA	NA	NA	-12941	NM_030024	78004	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	0.015000	0.457711	
mm_42303.1	chr5	114772796	114772996	+	1	NA	NA	NA	595	NM_019834	26431	Mm.195632	NM_019834	ENSMUSG00000041890	Git2	1500036H07Rik|5830420E16Rik|6430510B20Rik|9630056M03Rik|B230104M05Rik|CAT2|mKIAA0148	G protein-coupled receptor kinase-interactor 2	protein-coding	0.100000	0.711443	
mm_18523.1	chr2	63113028	63113228	-	1	NA	NA	NA	71159	NM_133207	170738	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.000000	0.323383	
mm_20092.1	chr2	120850513	120850713	-	1	NA	NA	NA	-29	NM_080788	140810	Mm.275698	NM_080788	ENSMUSG00000090100	Ttbk2	2610507N02Rik|AI326283|B930008N24Rik|TTK|Ttbk|Ttbk1|mKIAA0847	tau tubulin kinase 2	protein-coding	0.070000	0.601990	
mm_5222.1	chr1	14304446	14304646	-	1	NA	NA	NA	5653	NM_001310459	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.020000	0.472637	-88(CCACTTAAAGAC,+,0.00)
mm_16661.1	chr2	6720732	6720932	-	1	NA	NA	NA	830	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.000000	0.472637	
mm_96665.1	chr11	69409607	69409807	+	1	NA	NA	NA	3968	NM_001017426	216850	Mm.261201	NM_001017426	ENSMUSG00000018476	Kdm6b	1700064E03Rik|BC038313|Jmjd3|mKIAA0346	KDM1 lysine (K)-specific demethylase 6B	protein-coding	0.030000	0.532338	
mm_77317.1	chr8	117801826	117802026	-	1	NA	NA	NA	3	NM_026758	68533	Mm.181836	NM_026758	ENSMUSG00000031843	Mphosph6	1110001M01Rik|AA536809|C86426	M phase phosphoprotein 6	protein-coding	0.095000	0.601990	
mm_141077.1	chr17	25861256	25861456	-	1	NA	NA	NA	159	NM_001163766	106618	Mm.35470	NM_134124	ENSMUSG00000073434	Wdr90	3230401M21Rik|AI551153|mKIAA1924	WD repeat domain 90	protein-coding	0.145000	0.741294	
mm_143365.1	chr17	67354379	67354579	-	1	NA	NA	NA	-20	NM_008984	19274	Mm.311809	NM_008984	ENSMUSG00000033278	Ptprm	RPTPmu|mKIAA4044	protein tyrosine phosphatase, receptor type, M	protein-coding	0.150000	0.776119	
mm_169665.1	chr15	60614454	60614654	-	1	NA	NA	NA	-208411	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0.025000	0.507463	-31(GCCTATATAAGC,-,0.00)
mm_15130.1	chr2	153900276	153900476	+	1	NA	NA	NA	-12	NM_199303	228796	Mm.137570	NM_199303	ENSMUSG00000068009	Bpifb6	Bpil3|Gm119|Lplunc6	BPI fold containing family B, member 6	protein-coding	0.010000	0.492537	
mm_71006.1	chr8	31111802	31112002	+	1	NA	NA	NA	56	NM_175136	68867	Mm.29532	NM_175136	ENSMUSG00000039328	Rnf122	1110063C11Rik	ring finger protein 122	protein-coding	0.085000	0.671642	
mm_55382.1	chr6	58907026	58907226	-	1	NA	NA	NA	0	NM_021432	58243	Mm.389747	NM_021432	ENSMUSG00000055430	Nap1l5	1110020M21Rik	nucleosome assembly protein 1-like 5	protein-coding	0.080000	0.592040	
mm_104060.1	chr11	86584329	86584529	-	1	NA	NA	NA	-271	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.378109	
mm_57249.1	chr6	123283306	123283506	-	1	NA	NA	NA	6465	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.363184	77(CTTTTTAGACTG,+,0.00)
mm_74423.1	chr8	3658935	3659135	-	1	NA	NA	NA	3265	NM_022984	57264	Mm.1181	NM_022984	ENSMUSG00000012705	Retn	ADSF|Fizz3|Rstn|Xcp4	resistin	protein-coding	0.005000	0.492537	
mm_50381.1	chr6	48685858	48686058	+	1	NA	NA	NA	1380	NM_174990	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.010000	0.507463	
mm_114046.1	chr13	54107104	54107304	+	1	NA	NA	NA	35359	NM_027324	14057	Mm.134191	NM_027324	ENSMUSG00000021474	Sfxn1	2810002O05Rik|A930015P12Rik|f	sideroflexin 1	protein-coding	0.000000	0.398010	
mm_36426.1	chr4	82291004	82291204	-	1	NA	NA	NA	214675	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.005000	0.283582	
mm_25108.1	chr3	101377016	101377216	+	1	NA	NA	NA	-9	NM_207205	78908	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	0.130000	0.786070	
mm_142799.1	chr17	50239003	50239203	-	1	NA	NA	NA	-105	NR_131975	446210	Mm.378184	NM_001004437	ENSMUSG00000067103	AY702103	STDP2	cDNA sequence AY702103	ncRNA	0.005000	0.492537	38(AACTTTATAAAG,-,0.00),40(CTTTATAAAGTG,+,0.00)
mm_123948.1	chr14	73384245	73384445	-	1	NA	NA	NA	926	NM_008410	16432	Mm.4266	NM_008410	ENSMUSG00000022108	Itm2b	AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2	integral membrane protein 2B	protein-coding	0.005000	0.348259	
mm_121274.1	chr14	103513304	103513504	+	1	NA	NA	NA	63	NM_022886	64929	Mm.244003	NM_022886	ENSMUSG00000022123	Scel	9230114I02Rik	sciellin	protein-coding	0.040000	0.542289	
mm_112612.1	chr13	15463175	15463375	+	1	NA	NA	NA	-448	NM_008130	14634	Mm.5098	NM_008130	ENSMUSG00000021318	Gli3	AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add	GLI-Kruppel family member GLI3	protein-coding	0.145000	0.796020	
mm_112917.1	chr13	20923073	20923273	+	1	NA	NA	NA	129060	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.005000	0.398010	69(CCTCATAAACAC,+,0.00)
mm_8789.1	chr1	161704569	161704769	-	1	NA	NA	NA	83826	NM_001205243	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.010000	0.437811	
mm_160179.1	chr7	45813743	45813943	-	1	NA	NA	NA	473	NM_011181	19158	Mm.272130	NM_011181	ENSMUSG00000003269	Cyth2	ARNO|CLM2|Pscd2	cytohesin 2	protein-coding	0.120000	0.691542	
mm_77251.1	chr8	115705841	115706041	-	1	NA	NA	NA	953	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.060000	0.616915	
mm_152943.1	chr19	28929130	28929330	-	1	NA	NA	NA	-34690	NM_028922	74411	Mm.441887	NM_028922	ENSMUSG00000040105	Plpp6	4932443D16Rik|Ppapdc2	phospholipid phosphatase 6	protein-coding	0.000000	0.522388	39(GCCTCTATAGGG,-,0.00)
mm_38279.1	chr4	136889960	136890160	-	1	NA	NA	NA	2854	NM_007574	12262	Mm.439732	NM_007574	ENSMUSG00000036896	C1qc	AI385742|C1qg|Ciqc	complement component 1, q subcomponent, C chain	protein-coding	0.030000	0.592040	
mm_113997.1	chr13	52583294	52583494	+	1	NA	NA	NA	-43	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.120000	0.721393	
mm_1152.1	chr1	60807840	60808040	+	1	NA	NA	NA	61552	NM_007642	12487	Mm.255003	NM_007642	ENSMUSG00000026012	Cd28	-	CD28 antigen	protein-coding	0.005000	0.482587	
mm_146912.1	chr18	31447228	31447428	-	1	NA	NA	NA	87	NM_009308	20983	Mm.233846	NM_009308	ENSMUSG00000024261	Syt4	SytIV	synaptotagmin IV	protein-coding	0.040000	0.587065	
mm_22573.1	chr3	10342713	10342913	+	1	NA	NA	NA	-7157	NM_001010834	241877	Mm.442146	NM_001010834	ENSMUSG00000058921	Slc10a5	Gm405|mP5	solute carrier family 10 (sodium/bile acid cotransporter family), member 5	protein-coding	0.025000	0.522388	
mm_96587.1	chr11	69089690	69089890	+	1	NA	NA	NA	1262	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.025000	0.592040	
mm_119413.1	chr14	45155643	45155843	+	1	NA	NA	NA	63682	NM_172597	70561	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.010000	0.457711	
mm_47691.1	chr5	129669987	129670187	-	1	NA	NA	NA	1	NM_172462	22648	Mm.135067	NM_172462	ENSMUSG00000051034	Zfp11	6720465D24|Krox-6|Zfp-11	zinc finger protein 11	protein-coding	0.110000	0.651741	
mm_126902.1	chr15	89553212	89553412	+	1	NA	NA	NA	-15014	NM_013455	11434	Mm.57	NM_013455	ENSMUSG00000022622	Acr	-	acrosin prepropeptide	protein-coding	0.010000	0.318408	
mm_163775.1	chr13	120018396	120018596	+	1	NA	NA	NA	33708	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.000000	0.407960	
mm_109836.1	chr12	4233815	4234015	-	1	NA	NA	NA	-112	NM_001204912	69709	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.045000	0.517413	
mm_75300.1	chr8	41082976	41083176	-	1	NA	NA	NA	-28280	NM_001005864	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.000000	0.432836	
mm_155925.1	chrX	103356488	103356688	+	1	NA	NA	NA	112	NM_009767	12212	Mm.42223	NM_009767	ENSMUSG00000031327	Chic1	Brx|ENSMUSG00000073019|Gm10454	cysteine-rich hydrophobic domain 1	protein-coding	0.075000	0.577114	
mm_3359.1	chr1	138174353	138174553	+	1	NA	NA	NA	673	NM_001111316	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.015000	0.417910	39(GTTTTTAAAGCA,+,0.00)
mm_82778.1	chr9	27155303	27155503	-	1	NA	NA	NA	18	NM_023277	83964	Mm.28770	NM_023277	ENSMUSG00000031990	Jam3	1110002N23Rik|JAM-3|JAM-C|Jcam3	junction adhesion molecule 3	protein-coding	0.115000	0.686567	
mm_55986.1	chr6	85961498	85961698	-	1	NA	NA	NA	69	NM_028099	72102	Mm.24007	NM_028099	ENSMUSG00000030002	Dusp11	2010300F21Rik|AI481497	dual specificity phosphatase 11 (RNA/RNP complex 1-interacting)	protein-coding	0.120000	0.681592	
mm_126903.1	chr15	89568224	89568424	+	1	NA	NA	NA	-2	NM_013455	11434	Mm.57	NM_013455	ENSMUSG00000022622	Acr	-	acrosin prepropeptide	protein-coding	0.015000	0.582090	
mm_17113.1	chr2	24422905	24423105	-	1	NA	NA	NA	37608	NM_177611	215632	Mm.490434	NM_177611	ENSMUSG00000026979	Psd4	BC046518|EFA6B	pleckstrin and Sec7 domain containing 4	protein-coding	0.015000	0.577114	
mm_119119.1	chr14	31093402	31093602	+	1	NA	NA	NA	35428	NM_001308466	66487	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0.005000	0.422886	
mm_57806.1	chr6	129421047	129421247	-	1	NA	NA	NA	12285	NM_172732	232414	Mm.391518	NM_172732	ENSMUSG00000046080	Clec9a	9830005G06Rik|DNGR-1	C-type lectin domain family 9, member a	protein-coding	0.000000	0.378109	
mm_108616.1	chr12	85524601	85524801	+	1	NA	NA	NA	50800	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.015000	0.542289	
mm_11151.1	chr2	28527696	28527896	+	1	NA	NA	NA	-5668	NM_001145835	19730	Mm.5236	NM_009058	ENSMUSG00000026821	Ralgds	Gnds|Rgds|mKIAA1308	ral guanine nucleotide dissociation stimulator	protein-coding	0.030000	0.636816	
mm_18246.1	chr2	52194339	52194539	-	1	NA	NA	NA	-96563	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.015000	0.482587	
mm_92145.1	chr10	67037872	67038072	-	1	NA	NA	NA	32897	NR_110511	102634101	Mm.445258	NR_110511		Gm31763	-	predicted gene, 31763	ncRNA	0.005000	0.412935	
mm_73498.1	chr8	107183001	107183201	+	1	NA	NA	NA	32440	NM_025558	66427	Mm.20242	NM_025558	ENSMUSG00000031924	Cyb5b	1810044O22Rik|AU015618|Cyb5m	cytochrome b5 type B	protein-coding	0.005000	0.353234	
mm_173097.1	chrX	152043417	152043617	-	1	NA	NA	NA	27089	NM_019710	24061	Mm.482095	NM_019710	ENSMUSG00000041133	Smc1a	5830426I24Rik|SMC-1A|Sb1.8|Smc1|Smc1alpha|Smc1l1|Smcb|mKIAA0178	structural maintenance of chromosomes 1A	protein-coding	0.025000	0.417910	-25(ATCTATTAAAAG,-,0.00)
mm_28998.1	chr3	101576269	101576469	-	1	NA	NA	NA	28338	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.050000	0.532338	
mm_86794.1	chr10	20229663	20229863	+	1	NA	NA	NA	21324	NM_001101561	621697	Mm.440587	NM_001101561		Rpl32l	EG621697|Gm6251	ribosomal protein L32-like	protein-coding	0.010000	0.497512	
mm_103731.1	chr11	79962261	79962461	-	1	NA	NA	NA	26	NM_144826	216987	Mm.274961	NM_144826	ENSMUSG00000035575	Utp6	4732497O03Rik|HCA66	UTP6 small subunit processome component	protein-coding	0.075000	0.547264	-93(CGCTAGAAAAGA,-,0.00)
mm_96848.1	chr11	70038475	70038675	+	1	NA	NA	NA	-15549	NM_001291131	11889	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.015000	0.422886	
mm_137843.1	chr17	31057593	31057793	+	1	NA	NA	NA	-1	NM_009593	11307	Mm.15691	NM_009593	ENSMUSG00000024030	Abcg1	AW413978|Abc8|White	ATP-binding cassette, sub-family G (WHITE), member 1	protein-coding	0.130000	0.741294	
mm_102443.1	chr11	59544042	59544242	-	1	NA	NA	NA	1456	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.020000	0.552239	
mm_64621.1	chr7	3665366	3665566	-	1	NA	NA	NA	374	NM_027203	69757	Mm.389782	NM_027203	ENSMUSG00000078813	Leng1	1500001K17Rik	leukocyte receptor cluster (LRC) member 1	protein-coding	0.075000	0.616915	
mm_79325.1	chr9	53301414	53301614	+	1	NA	NA	NA	-156	NM_176846	320051	Mm.277540	NM_176846	ENSMUSG00000034584	Exph5	AC079869.22gm5|B130009M24Rik|E030050P12|Kiaa0624|Slac2b|slac2-b	exophilin 5	protein-coding	0.040000	0.532338	
mm_157944.1	chrX	85776551	85776751	-	1	NA	NA	NA	168	NM_001294140	14933	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	0.090000	0.726368	
mm_95961.1	chr11	58867153	58867353	+	1	NA	NA	NA	13	NM_172403	69944	Mm.32118	NM_172403	ENSMUSG00000020491	2810021J22Rik	AI449137	RIKEN cDNA 2810021J22 gene	protein-coding	0.080000	0.636816	
mm_62202.1	chr7	97790697	97790897	+	1	NA	NA	NA	-52142	NM_011035	18479	Mm.260227	NM_011035	ENSMUSG00000030774	Pak1	AW045634|PAK-1|Paka	p21 protein (Cdc42/Rac)-activated kinase 1	protein-coding	0.010000	0.467662	
mm_8807.1	chr1	161876569	161876769	-	1	NA	NA	NA	-8	NM_172645	226551	Mm.170002	NM_172645	ENSMUSG00000040297	Suco	4732491B11|AI848100|AU016931|Opt	SUN domain containing ossification factor	protein-coding	0.150000	0.786070	
mm_3591.1	chr1	151362962	151363162	+	1	NA	NA	NA	18564	NM_001039511	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.010000	0.378109	17(CTTTTTAGACTG,+,0.00)
mm_111737.1	chr12	103865579	103865779	-	1	NA	NA	NA	-2060	NM_009243	20700	Mm.439692	NM_009243	ENSMUSG00000066366	Serpina1a	Aat-2|Aat2|Dom1|PI1|Spi1-1|Spi1-3	serine (or cysteine) peptidase inhibitor, clade A, member 1A	protein-coding	0.005000	0.542289	
mm_31533.1	chr4	55351229	55351429	+	1	NA	NA	NA	1287	NM_009011	19359	Mm.196846	NM_009011	ENSMUSG00000028426	Rad23b	0610007D13Rik|AV001138|HR23B|mHR23B|p58	RAD23 homolog B, nucleotide excision repair protein	protein-coding	0.035000	0.358209	
mm_43039.1	chr5	124006379	124006579	+	1	NA	NA	NA	9627	NR_105999	102465625		NR_105999	ENSMUSG00000098454	Mir7032	Gm27309|mmu-mir-7032	microRNA 7032	ncRNA	0.045000	0.676617	
mm_69661.1	chr7	139979414	139979614	-	1	NA	NA	NA	-759	NM_001347613	381933	Mm.440431	NM_001033465	ENSMUSG00000073795	6430531B16Rik	Gm1093	RIKEN cDNA 6430531B16 gene	protein-coding	0.015000	0.477612	
mm_94242.1	chr11	3293182	3293382	+	1	NA	NA	NA	2825	NM_019574	56218	Mm.275563	NM_019574	ENSMUSG00000020453	Patz1	8430401L15Rik|AI447519|Mazr|Patz|Zfp278	POZ (BTB) and AT hook containing zinc finger 1	protein-coding	0.005000	0.517413	-32(GTTTTTAAAGTC,+,0.00)
mm_60565.1	chr7	44481309	44481509	+	1	NA	NA	NA	-3108	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.457711	
mm_133443.1	chr16	87729648	87729848	+	1	NA	NA	NA	30794	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.045000	0.621891	
mm_124324.1	chr14	103815770	103815970	-	1	NA	NA	NA	27831	NM_007904	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.035000	0.452736	
mm_147157.1	chr18	36679331	36679531	-	1	NA	NA	NA	-65	NM_146085	225372	Mm.89673	NM_146085	ENSMUSG00000006050	Apbb3	Fe65l2|Rirl2|TR2S	amyloid beta (A4) precursor protein-binding, family B, member 3	protein-coding	0.075000	0.606965	-35(TGGCATTTAAGG,-,0.00),-33(GCATTTAAGGCA,+,0.00)
mm_68592.1	chr7	116038642	116038842	-	1	NA	NA	NA	2	NM_001025559	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.040000	0.552239	
mm_56579.1	chr6	106771544	106771744	-	1	NA	NA	NA	2506	NM_001242358	70047	Mm.196332	NM_027296	ENSMUSG00000013736	Trnt1	2410043H24Rik|2610044E04Rik|9830143O18Rik|AA408384|C76540|CGI-47|mt-Trat	tRNA nucleotidyl transferase, CCA-adding, 1	protein-coding	0.010000	0.427861	
mm_51993.1	chr6	92103560	92103760	+	1	NA	NA	NA	11227	NM_001347342	22026	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.005000	0.268657	
mm_18377.1	chr2	59979579	59979779	-	1	NA	NA	NA	-97073	NM_028118	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.005000	0.427861	
mm_52714.1	chr6	119481431	119481631	+	1	NA	NA	NA	1863	NM_133940	101358	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.020000	0.407960	
mm_151998.1	chr19	5898110	5898310	-	1	NA	NA	NA	-4103	NM_198634	332359	Mm.329642	NM_198634	ENSMUSG00000044390	Tigd3	-	tigger transposable element derived 3	protein-coding	0.000000	0.577114	
mm_101100.1	chr11	11931540	11931740	-	1	NA	NA	NA	-33496	NM_001190448	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.015000	0.338308	
mm_27050.1	chr3	27209737	27209937	-	1	NA	NA	NA	26833	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.035000	0.532338	
mm_92382.1	chr10	76442645	76442845	-	1	NA	NA	NA	167	NM_008787	18541	Mm.251794	NM_008787	ENSMUSG00000001151	Pcnt	AW476095|C86676|KEN|Pcnt2|kendrin|m239Asp|m275Asp	pericentrin (kendrin)	protein-coding	0.100000	0.666667	
mm_84380.1	chr9	65422677	65422877	-	1	NA	NA	NA	-4	NM_178933	330962	Mm.335247	NM_178933	ENSMUSG00000053862	Slc51b	Ostb	solute carrier family 51, beta subunit	protein-coding	0.015000	0.547264	
mm_41740.1	chr5	102727531	102727731	+	1	NA	NA	NA	-41179	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.005000	0.268657	
mm_104675.1	chr11	97664718	97664918	-	1	NA	NA	NA	1406	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.010000	0.552239	
mm_128147.1	chr15	31601650	31601850	-	1	NA	NA	NA	54	NM_007637	12465	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	0.095000	0.606965	
mm_96440.1	chr11	67321681	67321881	+	1	NA	NA	NA	-5322	NM_001081250	544791	Mm.461064	NM_001081250	ENSMUSG00000060180	Myh13	MyHC-eo	myosin, heavy polypeptide 13, skeletal muscle	protein-coding	0.015000	0.522388	-32(GAGTATAAAGAG,-,0.00)
mm_163130.1	chr11	78401284	78401484	+	1	NA	NA	NA	6899	NR_003282	790911	Mm.457257	NR_003282	ENSMUSG00000085747	Slc13a2os	Gm11194|OTTMUSG00000000132	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand	ncRNA	0.005000	0.482587	
mm_81837.1	chr9	118478759	118478959	+	1	NA	NA	NA	670	NM_010136	13813	Mm.200692	NM_010136	ENSMUSG00000032446	Eomes	C77258|TBR-2|Tbr2	eomesodermin	protein-coding	0.100000	0.731343	
mm_157007.1	chrX	7595115	7595315	-	1	NA	NA	NA	10205	NM_138603	54638	Mm.288192	NM_138603	ENSMUSG00000031143	Ccdc22	AI481216|DXImx40e|Ppp1r3f|Sfc22	coiled-coil domain containing 22	protein-coding	0.010000	0.487562	
mm_112267.1	chr12	114127931	114128131	-	1	NA	NA	NA	341435	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.000000	0.407960	
mm_27055.1	chr3	27438980	27439180	-	1	NA	NA	NA	67729	NM_177330	208188	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0.000000	0.477612	
mm_943.1	chr1	56971939	56972139	+	1	NA	NA	NA	570	NR_024325	329160	Mm.419039	NR_024325	ENSMUSG00000087022	9130024F11Rik	B530002L08|EG329160	RIKEN cDNA 9130024F11 gene	ncRNA	0.055000	0.661692	
mm_42913.1	chr5	122650309	122650509	+	1	NA	NA	NA	-15	NM_001284402	18439	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.025000	0.477612	-59(TCCTTTAAAAGA,-,0.00),-58(CCTTTAAAAGAA,+,0.00)
mm_164895.1	chr18	65222890	65223090	+	1	NA	NA	NA	-25871	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.020000	0.522388	
mm_166502.1	chr6	4538562	4538762	+	1	NA	NA	NA	33044	NM_007743	12843	Mm.277792	NM_007743	ENSMUSG00000029661	Col1a2	AA960264|AI325291|Col1a-2|Cola-2|Cola2|oim	collagen, type I, alpha 2	protein-coding	0.015000	0.417910	
mm_167193.1	chr7	142577819	142578019	+	1	NA	NA	NA	227	NR_130974	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.035000	0.577114	
mm_81102.1	chr9	106429476	106429676	+	1	NA	NA	NA	165	NM_009082	19944	Mm.288696	NM_009082	ENSMUSG00000048758	Rpl29	Rpl43	ribosomal protein L29	protein-coding	0.120000	0.671642	
mm_23563.1	chr3	63266717	63266917	+	1	NA	NA	NA	-28618	NM_001289462	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.005000	0.343284	
mm_150757.1	chr19	44107455	44107655	+	1	NA	NA	NA	-78	NM_001162410	12675	Mm.3996	NM_007700	ENSMUSG00000025199	Chuk	AI256658|Chuk1|Fbx24|Fbxo24|IKBKA|IKK1|Ikka|NFKBIKA	conserved helix-loop-helix ubiquitous kinase	protein-coding	0.075000	0.577114	
mm_2889.1	chr1	131867407	131867607	+	1	NA	NA	NA	230	NM_144875	226422	Mm.34027	NM_144875	ENSMUSG00000026433	Rab29	Rab7l1	RAB29, member RAS oncogene family	protein-coding	0.070000	0.592040	
mm_40530.1	chr5	57920148	57920348	+	1	NA	NA	NA	202167	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.005000	0.477612	
mm_101795.1	chr11	46195959	46196159	-	1	NA	NA	NA	25972	NR_106098	102465715		NR_106098	ENSMUSG00000099331	Mir7239	Gm27504|mmu-mir-7239	microRNA 7239	ncRNA	0.015000	0.462687	
mm_7706.1	chr1	130449062	130449262	-	1	NA	NA	NA	13582	NM_010016	13136	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0.005000	0.487562	
mm_146109.1	chr18	74230087	74230287	+	1	NA	NA	NA	13975	NM_028868	74322	Mm.17537	NM_028868	ENSMUSG00000024560	Cxxc1	2410002I16Rik|5830420C16Rik|AI426635|Cfp1|Cgbp|PHF18	CXXC finger 1 (PHD domain)	protein-coding	0.010000	0.398010	-43(GCCCCTAAAAAG,-,0.00)
mm_65419.1	chr7	25250776	25250976	-	1	NA	NA	NA	-118	NM_010155	13875	Mm.8068	NM_010155	ENSMUSG00000040857	Erf	-	Ets2 repressor factor	protein-coding	0.115000	0.781095	-36(GCCCCTTTAAGC,-,0.00),-34(CCCTTTAAGCCA,+,0.00)
mm_137828.1	chr17	30651590	30651790	+	1	NA	NA	NA	24754	NM_013811	13417	Mm.426017	NM_013811	ENSMUSG00000033826	Dnah8	ATPase|Dnahc8|Hst6.7b|P1-Loop	dynein, axonemal, heavy chain 8	protein-coding	0.010000	0.422886	
mm_64003.1	chr7	140173206	140173406	+	1	NA	NA	NA	-2798	NM_146518	258511	Mm.334306	NM_146518	ENSMUSG00000051051	Olfr523	MOR104-4	olfactory receptor 523	protein-coding	0.005000	0.582090	
mm_22288.1	chr2	180225814	180226014	-	1	NA	NA	NA	-55	NM_001081171	16776	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0.085000	0.736318	
mm_122274.1	chr14	34378477	34378677	-	1	NA	NA	NA	3073	NM_153127	105450	Mm.272673	NM_153127	ENSMUSG00000041445	Mmrn2	AA986839|ENDOGLYX1|Emilin3|EndoGlyx-1	multimerin 2	protein-coding	0.010000	0.567164	
mm_19648.1	chr2	102865437	102865637	-	1	NA	NA	NA	36128	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.010000	0.412935	
mm_165274.1	chr2	76747050	76747250	-	1	NA	NA	NA	71835	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.025000	0.462687	
mm_148132.1	chr18	75697519	75697719	-	1	NA	NA	NA	77	NM_201354	269037	Mm.36745	NM_201354	ENSMUSG00000052928	Ctif	Gm672	CBP80/20-dependent translation initiation factor	protein-coding	0.045000	0.616915	
mm_108301.1	chr12	79297261	79297461	+	1	NA	NA	NA	10	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.025000	0.532338	
mm_117563.1	chr13	85283989	85284189	-	1	NA	NA	NA	5397	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.000000	0.378109	
mm_28553.1	chr3	93279715	93279915	-	1	NA	NA	NA	-39934	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.005000	0.363184	
mm_169206.1	chr13	66441139	66441339	+	1	NA	NA	NA	-121	NM_001290196	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.025000	0.512438	
mm_111250.1	chr12	84876390	84876590	-	1	NA	NA	NA	5	NM_013589	16997	Mm.3900	NM_013589	ENSMUSG00000002020	Ltbp2	AW208642	latent transforming growth factor beta binding protein 2	protein-coding	0.080000	0.616915	
mm_159197.1	chr2	119547376	119547576	-	1	NA	NA	NA	151	NM_172857	241624	Mm.212773	NM_172857	ENSMUSG00000048647	Exd1	4932702D22Rik|Exdl1|mExd1	exonuclease 3'-5' domain containing 1	protein-coding	0.065000	0.606965	-33(GCACTTAAAAGG,-,0.00)
mm_9230.1	chr1	171251570	171251770	-	1	NA	NA	NA	1541	NM_172845	240913	Mm.491147	NM_172845	ENSMUSG00000006403	Adamts4	ADAM-TS4|ADAMTS-2|ADMP-1	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4	protein-coding	0.015000	0.552239	
mm_90053.1	chr10	116177130	116177330	+	1	NA	NA	NA	-28	NM_001161839	19279	Mm.336316	NM_011217	ENSMUSG00000020151	Ptprr	Gmcp1|PTP-SL|PTPBR7|RPTPRR|mPTP213	protein tyrosine phosphatase, receptor type, R	protein-coding	0.035000	0.427861	-45(TTCCATTTAAGG,-,0.00),-43(CCATTTAAGGAG,+,0.00)
mm_151867.1	chr19	5797650	5797850	-	1	NA	NA	NA	-1769	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.005000	0.457711	
mm_36518.1	chr4	84532156	84532356	-	1	NA	NA	NA	142830	NM_172870	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.015000	0.388060	
mm_89800.1	chr10	102512352	102512552	+	1	NA	NA	NA	230	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding	0.005000	0.512438	-34(GAGTTGAAAAGG,-,0.00)
mm_89928.1	chr10	111232338	111232538	+	1	NA	NA	NA	-66241	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.035000	0.482587	
mm_50472.1	chr6	48987792	48987992	+	1	NA	NA	NA	1031	NM_172888	243377	Mm.446302	NM_172888	ENSMUSG00000039215	Svs1	9530003A11	seminal vesicle secretory protein 1	protein-coding	0.010000	0.522388	
mm_84177.1	chr9	59949625	59949825	-	1	NA	NA	NA	354	NM_013708	23958	Mm.103641	NM_013708	ENSMUSG00000032292	Nr2e3	A930035N01Rik|PNR|RNR|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding	0.010000	0.552239	
mm_106916.1	chr12	8216577	8216777	+	1	NA	NA	NA	8550	NM_001167767	68832	Mm.25608	NM_172401	ENSMUSG00000037669	Ldah	1110057K04Rik|mLDAH	lipid droplet associated hydrolase	protein-coding	0.010000	0.457711	
mm_133335.1	chr16	78707173	78707373	+	1	NA	NA	NA	-130585	NM_025967	67102	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.025000	0.383085	
mm_35123.1	chr4	11147624	11147824	-	1	NA	NA	NA	-8717	NM_001199105	60599	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.020000	0.462687	
mm_74617.1	chr8	12831818	12832018	-	1	NA	NA	NA	1	NR_045775	100504249	Mm.441494	NR_045775	ENSMUSG00000084780	Gm15350	OTTMUSG00000020611	predicted gene 15350	ncRNA	0.015000	0.567164	
mm_28699.1	chr3	95543043	95543243	-	1	NA	NA	NA	16357	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.030000	0.547264	
mm_5522.1	chr1	37864707	37864907	-	1	NA	NA	NA	275	NM_207228	211484	Mm.332756	NM_207228	ENSMUSG00000060771	Tsga10	4933432N21Rik|AI843383|Gm217|Mtsga10	testis specific 10	protein-coding	0.070000	0.716418	
mm_138782.1	chr17	37270428	37270628	+	1	NA	NA	NA	294	NM_013819	14991	Mm.14437	NM_013819	ENSMUSG00000016206	H2-M3	H-2M3|Hmt|M3a|MuprM3|MuprM301|MuprM302|R4B2	histocompatibility 2, M region locus 3	protein-coding	0.055000	0.601990	
mm_124463.1	chr14	121159569	121159769	-	1	NA	NA	NA	124095	NM_134082	223254	Mm.223980	NM_134082	ENSMUSG00000025555	Farp1	AW228844|BC030329|Cdep	FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)	protein-coding	0.025000	0.482587	
mm_40283.1	chr5	43233151	43233351	+	1	NA	NA	NA	-212	NM_175937	231207	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.150000	0.761194	
mm_113622.1	chr13	41636569	41636769	+	1	NA	NA	NA	-12774	NM_177808	328231	Mm.227476	NM_177808	ENSMUSG00000054258	Gm5082	A030008J09|EG328231	predicted gene 5082	protein-coding	0.010000	0.378109	-13(CTCTTTAGAGAC,+,0.00)
mm_157495.1	chrX	48454133	48454333	-	1	NA	NA	NA	8899	NM_019680	56501	Mm.36808	NM_019680	ENSMUSG00000031103	Elf4	AV314029|BC042423|ENSMUSG00000053512|Gm9907|Mef	E74-like factor 4 (ets domain transcription factor)	protein-coding	0.090000	0.661692	
mm_59156.1	chr7	24370244	24370444	+	1	NA	NA	NA	81	NM_008433	16534	Mm.9911	NM_008433	ENSMUSG00000054342	Kcnn4	IK1|IKCA1|KCA4|KCa3.1|SK4|SKCas|mIKCa1	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	protein-coding	0.020000	0.661692	
mm_168917.1	chr12	58156365	58156565	+	1	NA	NA	NA	-55339	NM_009216	20605	Mm.278336	NM_009216	ENSMUSG00000035431	Sstr1	SRIF-2|SS-1-R|SS1-R|SS1R|Smstr-1|Smstr1|sst1	somatostatin receptor 1	protein-coding	0.055000	0.626866	
mm_46920.1	chr5	114658319	114658519	-	1	NA	NA	NA	2	NM_022017	63873	Mm.266450	NM_022017	ENSMUSG00000014158	Trpv4	0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC	transient receptor potential cation channel, subfamily V, member 4	protein-coding	0.135000	0.776119	
mm_58109.1	chr6	138422418	138422618	-	1	NA	NA	NA	-587	NR_126073	319702	Mm.403785	NR_126072	ENSMUSG00000089957	A830011K09Rik	-	RIKEN cDNA A830011K09 gene	ncRNA	0.020000	0.398010	
mm_82076.1	chr9	122981450	122981650	+	1	NA	NA	NA	30469	NM_010620	209737	Mm.278920	NM_010620	ENSMUSG00000036768	Kif15	3110023M17Rik|3930402I10Rik|D330038N01|HKLP2|Knsl7|b2b1117.1Clo|b2b1117.1aClo	kinesin family member 15	protein-coding	0.000000	0.368159	
mm_9546.1	chr1	173912935	173913135	-	1	NA	NA	NA	11	NM_001301745	381308	Mm.490248	NM_001033450	ENSMUSG00000026536	Ifi211	A730048F03|Ifi205b|Mnda|ifi-205-B	interferon activated gene 211	protein-coding	0.010000	0.452736	
mm_125578.1	chr15	59461910	59462110	+	1	NA	NA	NA	87812	NM_001164604	68501	Mm.27762	NM_026746	ENSMUSG00000059586	Nsmce2	1110014D18Rik|AI661537	NSE2/MMS21 homolog, SMC5-SMC6 complex SUMO ligase	protein-coding	0.000000	0.333333	
mm_101602.1	chr11	34783029	34783229	-	1	NA	NA	NA	776	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.010000	0.512438	
mm_12519.1	chr2	72137075	72137275	+	1	NA	NA	NA	82558	NM_001204166	56508	Mm.196153	NM_019688	ENSMUSG00000049044	Rapgef4	1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040	Rap guanine nucleotide exchange factor (GEF) 4	protein-coding	0.010000	0.452736	
mm_7074.1	chr1	88205660	88205860	-	1	NA	NA	NA	-12	NM_008299	15504	Mm.439983	NM_008299	ENSMUSG00000081984	Dnajb3	Hsj3|MSJ-1|Msj1	DnaJ heat shock protein family (Hsp40) member B3	protein-coding	0.100000	0.686567	
mm_71661.1	chr8	60632727	60632927	+	1	NA	NA	NA	2	NM_001293769	71306	Mm.23242	NM_027756	ENSMUSG00000031647	Mfap3l	4933428A15Rik|5430405D20Rik|AI461995|AW125052|NYD-sp9|mKIAA0626	microfibrillar-associated protein 3-like	protein-coding	0.125000	0.766169	
mm_13957.1	chr2	121358552	121358752	+	1	NA	NA	NA	11	NM_009897	12716	Mm.252145	NM_009897	ENSMUSG00000000308	Ckmt1	Mt-CK|ScCKmit|UbCKmit|mi-CK	creatine kinase, mitochondrial 1, ubiquitous	protein-coding	0.055000	0.671642	
mm_30982.1	chr4	34893655	34893855	+	1	NA	NA	NA	-24	NM_009889	12640	Mm.1361	NM_009889	ENSMUSG00000028298	Cga	CG-alpha|FSHA|GPHA1|GPHalpha|HCG|LHA|Tsha|aGSU|alpha-GSU|alphaGSU|alphaSU	glycoprotein hormones, alpha subunit	protein-coding	0.005000	0.442786	-9(TGGTATAAAAGA,-,0.00)
mm_86094.1	chr9	115185955	115186155	-	1	NA	NA	NA	96015	NR_029430	111186	Mm.484753	NR_029430		Stmn1-rs1	Lag-rs1|Lap18-rs1	stathmin 1, related sequence 1	pseudo	0.005000	0.552239	
mm_43454.1	chr5	136198942	136199142	+	1	NA	NA	NA	-88	NM_025774	66801	Mm.425295	NM_025774	ENSMUSG00000039737	Prkrip1	8430424D23Rik|C114	Prkr interacting protein 1 (IL11 inducible)	protein-coding	0.080000	0.537313	
mm_91697.1	chr10	44003716	44003916	-	1	NA	NA	NA	1030	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.100000	0.701493	
mm_1124.1	chr1	60117135	60117335	+	1	NA	NA	NA	9152	NR_104344	241066	Mm.276441	NM_139150	ENSMUSG00000026017	Carf	Als2cr8|ECBRC-FC1|ECBRC-FC2	calcium response factor	protein-coding	0.045000	0.522388	
mm_112790.1	chr13	20185307	20185507	+	1	NA	NA	NA	94900	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.055000	0.527363	
mm_8541.1	chr1	155097894	155098094	-	1	NA	NA	NA	1642	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.050000	0.527363	
mm_58223.1	chr6	144209540	144209740	-	1	NA	NA	NA	-72	NM_001243163	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.015000	0.532338	30(CCCTTTAAGAGA,-,0.00),31(CCTTTAAGAGAA,+,0.00)
mm_24694.1	chr3	95032688	95032888	+	1	NA	NA	NA	9826	NM_001282017	19185	Mm.2261	NM_008951	ENSMUSG00000005625	Psmd4	Af1|Mcb1|angiocidin	proteasome (prosome, macropain) 26S subunit, non-ATPase, 4	protein-coding	0.015000	0.522388	
mm_83162.1	chr9	40465722	40465922	-	1	NA	NA	NA	-10058	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.010000	0.462687	
mm_85532.1	chr9	106476533	106476733	-	1	NA	NA	NA	316	NM_001311150	235587	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	0.025000	0.537313	
mm_104502.1	chr11	95914793	95914993	-	1	NA	NA	NA	-22	NM_008081	14422	Mm.340702	NM_008081	ENSMUSG00000013418	B4galnt2	AI593864|Dlb-1|Dlb1|Galg2|Galgt2|Ggm3|Igf2bp1	beta-1,4-N-acetyl-galactosaminyl transferase 2	protein-coding	0.080000	0.646766	
mm_79587.1	chr9	58273015	58273215	+	1	NA	NA	NA	19951	NM_026942	69106	Mm.216502	NM_026942	ENSMUSG00000032333	Stoml1	1810015E19Rik|AI847431|SLP1|STORP|UNC24|WPB72	stomatin-like 1	protein-coding	0.035000	0.472637	
mm_160054.1	chr7	3739789	3739989	-	1	NA	NA	NA	-19507	NM_011095	18733	Mm.326531	NM_011095	ENSMUSG00000058818	Pirb	Gp91|LIR-3|Lilrb3|PIR-B	paired Ig-like receptor B	protein-coding	0.000000	0.562189	
mm_35192.1	chr4	16013776	16013976	-	1	NA	NA	NA	1	NM_145950	209212	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.180000	0.800995	
mm_130699.1	chr15	100685103	100685303	-	1	NA	NA	NA	2717	NM_033612	109901	Mm.2131	NM_033612	ENSMUSG00000023031	Cela1	1810009A17Rik|1810062B19Rik|Ela-1|Ela1|PC-TsF	chymotrypsin-like elastase family, member 1	protein-coding	0.030000	0.542289	
mm_47807.1	chr5	133598301	133598501	-	1	NA	NA	NA	-501347	NM_030719	80909	Mm.45218	NM_030719	ENSMUSG00000015944	Gatsl2	7530428J21Rik|AW742413|Gats|Gatsl1	GATS protein-like 2	protein-coding	0.015000	0.457711	
mm_117296.1	chr13	66932986	66933186	-	1	NA	NA	NA	-14	NM_025547	66410	Mm.347939	NM_025547	ENSMUSG00000021519	Mterf3	2410017I18Rik|Mterfd1	mitochondrial transcription termination factor 3	protein-coding	0.155000	0.736318	
mm_121106.1	chr14	101198917	101199117	+	1	NA	NA	NA	1052	NM_029680	76627	Mm.31415	NM_029680	ENSMUSG00000042888	Prr30	1700110M21Rik	proline rich 30	protein-coding	0.005000	0.542289	
mm_45194.1	chr5	52190404	52190604	-	1	NA	NA	NA	42	NR_104311	13204	Mm.993	NM_007839	ENSMUSG00000029169	Dhx15	DBP1|DEAH9|Ddx15|HRH2|mDEAH9	DEAH (Asp-Glu-Ala-His) box polypeptide 15	protein-coding	0.160000	0.771144	
mm_147230.1	chr18	38209677	38209877	-	1	NA	NA	NA	-15	NM_029357	75599	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.060000	0.646766	
mm_21088.1	chr2	153108920	153109120	-	1	NA	NA	NA	552	NM_010407	15162	Mm.715	NM_010407	ENSMUSG00000003283	Hck	AI849071|Bmk	hemopoietic cell kinase	protein-coding	0.020000	0.587065	
mm_159749.1	chr5	76840717	76840917	+	1	NA	NA	NA	218	NM_001163793	320827	Mm.101504	NM_001163793	ENSMUSG00000036377	C530008M17Rik	2810489J07Rik|4930529A19Rik|4931405B09Rik|Kiaa1211|mKIAA1211	RIKEN cDNA C530008M17 gene	protein-coding	0.015000	0.442786	
mm_165369.1	chr2	127335941	127336141	+	1	NA	NA	NA	-118	NM_010090	13537	Mm.4729	NM_010090	ENSMUSG00000027368	Dusp2	PAC1	dual specificity phosphatase 2	protein-coding	0.080000	0.711443	84(GAGTATTTAAGC,-,0.00)
mm_134773.1	chr16	23890733	23890933	-	1	NA	NA	NA	11	NM_009215	20604	Mm.2453	NM_009215	ENSMUSG00000004366	Sst	SOM|SRIF|SS|Smst	somatostatin	protein-coding	0.060000	0.601990	-45(GAGTTTAAAAAG,-,0.00),-43(GTTTAAAAAGGG,+,0.00)
mm_2718.1	chr1	128151720	128151920	+	1	NA	NA	NA	48514	NM_181750	226412	Mm.221041	NM_181750	ENSMUSG00000056211	R3hdm1	R3hdm	R3H domain containing 1	protein-coding	0.005000	0.402985	
mm_70131.1	chr7	143238103	143238303	-	1	NA	NA	NA	58344	NR_001461	63830	Mm.356096	NR_001461	ENSMUSG00000101609	Kcnq1ot1	Kvlqt1-as|Lit1|Tssc8	KCNQ1 overlapping transcript 1	ncRNA	0.005000	0.353234	
mm_51006.1	chr6	64729025	64729225	+	1	NA	NA	NA	-21	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal bHLH transcription factor 1	protein-coding	0.075000	0.611940	-34(CGCTTTTTAAAG,-,0.00),-33(GCTTTTTAAAGG,-,0.00),-32(CTTTTTAAAGGG,+,0.00),-32(CTTTTTAAAGGG,-,0.00)
mm_33638.1	chr4	132974060	132974260	+	1	NA	NA	NA	65	NM_010208	14191	Mm.271665	NM_010208	ENSMUSG00000028874	Fgr	-	FGR proto-oncogene, Src family tyrosine kinase	protein-coding	0.050000	0.611940	
mm_32233.1	chr4	102254838	102255038	+	1	NA	NA	NA	-1	NM_019840	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.005000	0.417910	
mm_95733.1	chr11	54626475	54626675	+	1	NA	NA	NA	30429	NM_001252497	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.010000	0.398010	
mm_13404.1	chr2	103980876	103981076	+	1	NA	NA	NA	10689	NM_001142335	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.040000	0.487562	
mm_72479.1	chr8	83608440	83608640	+	1	NA	NA	NA	-8	NM_001308227	81489	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.125000	0.661692	
mm_2947.1	chr1	132342241	132342441	+	1	NA	NA	NA	25607	NM_001311108	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.010000	0.467662	86(ACTTTTATAAGG,-,0.00)
mm_22581.1	chr3	10760258	10760458	+	1	NA	NA	NA	-320228	NM_001127191	74718	Mm.440548	NM_029068	ENSMUSG00000027534	Snx16	4930522N22Rik|AI117577|AI747675	sorting nexin 16	protein-coding	0.005000	0.407960	-54(CTGTATTAAAGC,-,0.00)
mm_131636.1	chr16	20421157	20421357	+	1	NA	NA	NA	5137	NM_013790	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.005000	0.572139	-35(GGGTCTATAAGA,-,0.00)
mm_129429.1	chr15	78493512	78493712	-	1	NA	NA	NA	1454	NM_008368	16185	Mm.35287	NM_008368	ENSMUSG00000068227	Il2rb	CD122|IL-15Rbeta|IL15Rbeta|Il-2/15Rbeta|Il-2Rbeta|p70	interleukin 2 receptor, beta chain	protein-coding	0.025000	0.552239	
mm_30979.1	chr4	34886548	34886748	+	1	NA	NA	NA	-3700	NM_013889	30046	Mm.38193	NM_013889	ENSMUSG00000039967	Zfp292	5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530	zinc finger protein 292	protein-coding	0.065000	0.641791	
mm_72672.1	chr8	84908652	84908852	+	1	NA	NA	NA	128	NM_010062	13423	Mm.350831	NM_010062	ENSMUSG00000003812	Dnase2a	Dnase2	deoxyribonuclease II alpha	protein-coding	0.065000	0.601990	-53(CGGTTTTTAGGG,-,0.00),-51(GTTTTTAGGGGA,+,0.00),-3(TCTTTTAGAGTC,+,0.00)
mm_89020.1	chr10	82127935	82128135	+	1	NA	NA	NA	22	NM_001163064	216177	Mm.482395	NM_001163064	ENSMUSG00000078435	AU041133	-	expressed sequence AU041133	protein-coding	0.080000	0.666667	
mm_158605.1	chrX	152327361	152327561	-	1	NA	NA	NA	32	NR_040269	72997	Mm.254833	NR_040269		Kantr	2810454L23Rik|2900056M20Rik|Spasm	Kdm5c adjacent non-coding transcript	ncRNA	0.045000	0.572139	
mm_69725.1	chr7	140770087	140770287	-	1	NA	NA	NA	6355	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.010000	0.482587	
mm_33453.1	chr4	130709600	130709800	+	1	NA	NA	NA	-39938	NR_028565	100217460		NR_028565	ENSMUSG00000065196	Snord85	MBII-251|Z50	small nucleolar RNA, C/D box 85	snoRNA	0.005000	0.358209	
mm_70060.1	chr7	142651937	142652137	-	1	NA	NA	NA	2959	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.025000	0.497512	
mm_58737.1	chr7	13030384	13030584	+	1	NA	NA	NA	4293	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.015000	0.547264	
mm_75928.1	chr8	71507654	71507854	-	1	NA	NA	NA	4015	NM_032398	84094	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	0.160000	0.741294	
mm_102406.1	chr11	59163674	59163874	-	1	NA	NA	NA	-29	NM_173785	216792	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	0.105000	0.706468	
mm_98706.1	chr11	96304031	96304231	+	1	NA	NA	NA	619	NM_008268	15413	Mm.207	NM_008268	ENSMUSG00000038700	Hoxb5	AI385717|Hox-2.1	homeobox B5	protein-coding	0.050000	0.611940	
mm_16254.1	chr2	173215627	173215827	+	1	NA	NA	NA	3195	NM_021394	58203	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.025000	0.532338	
mm_36973.1	chr4	109476503	109476703	-	1	NA	NA	NA	-98	NM_013876	29864	Mm.392580	NM_013876	ENSMUSG00000028557	Rnf11	-	ring finger protein 11	protein-coding	0.115000	0.776119	
mm_59022.1	chr7	19282494	19282694	+	1	NA	NA	NA	-30	NM_013648	20167	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0.090000	0.711443	-50(CCATTAAAACGG,+,0.00)
mm_89663.1	chr10	97483364	97483564	+	1	NA	NA	NA	1133	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.010000	0.477612	
mm_145471.1	chr18	60301110	60301310	+	1	NA	NA	NA	7830	NM_001101475	240328	Mm.329461	NM_001101475	ENSMUSG00000090942	F830016B08Rik	Ifgga4	RIKEN cDNA F830016B08 gene	protein-coding	0.005000	0.353234	
mm_150825.1	chr19	44562760	44562960	+	1	NA	NA	NA	6	NM_176958	319594	Mm.145278	NM_176958	ENSMUSG00000036450	Hif1an	2310046M24Rik|A830014H24Rik|FIH|FIH1	hypoxia-inducible factor 1, alpha subunit inhibitor	protein-coding	0.085000	0.611940	-97(CTACTTAAAAGG,-,0.00)
mm_134899.1	chr16	30039208	30039408	-	1	NA	NA	NA	171	NR_045878	71528	Mm.297640	NR_045878		9030404E10Rik	-	RIKEN cDNA 9030404E10 gene	ncRNA	0.005000	0.552239	-93(CCTCTAATGGGC,+,0.00)
mm_119071.1	chr14	30870541	30870741	+	1	NA	NA	NA	-8616	NM_181390	66175	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0.005000	0.492537	
mm_171759.1	chr5	105110181	105110381	-	1	NA	NA	NA	11	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.005000	0.502488	-28(GCACATAAAAGA,-,0.00)
mm_81416.1	chr9	109054935	109055135	+	1	NA	NA	NA	169	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.015000	0.482587	
mm_50040.1	chr6	41141202	41141402	+	1	NA	NA	NA	-105793	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.010000	0.417910	
mm_168712.1	chr11	99932602	99932802	+	1	NA	NA	NA	-3589	NM_001025244	432602	Mm.246878	NM_001025244	ENSMUSG00000051481	Krtap31-2	OTTMUSG00000002177	keratin associated protein 31-2	protein-coding	0.045000	0.542289	
mm_10434.1	chr2	14130748	14130948	+	1	NA	NA	NA	-43676	NM_001081310	625286	Mm.158781	NM_001081310	ENSMUSG00000061531	Tmem236	2010003H20Rik|Fam23a|Gm613	transmembrane protein 236	protein-coding	0.030000	0.492537	-36(AGCTATAAAAGC,-,0.00)
mm_62538.1	chr7	102267222	102267422	+	1	NA	NA	NA	-502	NM_009287	20866	Mm.645	NM_009287	ENSMUSG00000030987	Stim1	SIM	stromal interaction molecule 1	protein-coding	0.075000	0.631841	
mm_61539.1	chr7	79290468	79290668	+	1	NA	NA	NA	17302	NM_018811	54608	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.010000	0.442786	-89(GGGCATATAAAG,-,0.00)
mm_34592.1	chr4	150195995	150196195	+	1	NA	NA	NA	5040	NM_009802	12353	Mm.232523	NM_009802	ENSMUSG00000028972	Car6	Ca6|DOC1	carbonic anhydrase 6	protein-coding	0.040000	0.467662	
mm_4301.1	chr1	171839597	171839797	+	1	NA	NA	NA	0	NM_001252472	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.015000	0.487562	
mm_158879.1	chr1	4858223	4858423	+	1	NA	NA	NA	-5	NM_001159751	21399	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.060000	0.582090	
mm_39550.1	chr5	21785177	21785377	+	1	NA	NA	NA	-6	NM_011188	19181	Mm.2462	NM_011188	ENSMUSG00000028932	Psmc2	-	proteasome (prosome, macropain) 26S subunit, ATPase 2	protein-coding	0.095000	0.577114	
mm_71525.1	chr8	46852598	46852798	+	1	NA	NA	NA	112953	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.020000	0.527363	
mm_125149.1	chr15	30646610	30646810	+	1	NA	NA	NA	-392416	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.120000	0.741294	
mm_6495.1	chr1	74267885	74268085	-	1	NA	NA	NA	-10615	NM_174985	227289	Mm.246587	NM_174985	ENSMUSG00000064272	Gpbar1	BG37|GPCR|GPR131|M-BAR|TGR5	G protein-coupled bile acid receptor 1	protein-coding	0.010000	0.378109	
mm_18637.1	chr2	69405733	69405933	-	1	NA	NA	NA	25371	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.015000	0.462687	
mm_31294.1	chr4	45972281	45972481	+	1	NA	NA	NA	84	NM_146142	100121	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.140000	0.781095	
mm_59044.1	chr7	19345544	19345744	+	1	NA	NA	NA	573	NM_007948	13870	Mm.280913	NM_007948	ENSMUSG00000003549	Ercc1	Ercc-1	excision repair cross-complementing rodent repair deficiency, complementation group 1	protein-coding	0.035000	0.582090	
mm_104446.1	chr11	95026607	95026807	-	1	NA	NA	NA	14664	NM_133667	18604	Mm.29768	NM_133667	ENSMUSG00000038967	Pdk2	-	pyruvate dehydrogenase kinase, isoenzyme 2	protein-coding	0.010000	0.512438	
mm_130600.1	chr15	99780275	99780475	-	1	NA	NA	NA	-7860	NM_028015	71949	Mm.390821	NM_028015	ENSMUSG00000023021	Cers5	2310081H14Rik|AU045339|AW544927|Lass5|Trh4	ceramide synthase 5	protein-coding	0.045000	0.527363	
mm_23681.1	chr3	68618011	68618211	+	1	NA	NA	NA	45743	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.015000	0.507463	-34(ACCTCTTTAAGG,-,0.00),-32(CTCTTTAAGGAG,+,0.00)
mm_159067.1	chr2	24276909	24277109	+	1	NA	NA	NA	55	NM_001146087	54450	Mm.29261	NM_019451	ENSMUSG00000026983	Il1f5	AI413231|Fil1delta|IL-36Ra|IL36RN|Il-1h3|Il1hy1	interleukin 1 family, member 5 (delta)	protein-coding	0.005000	0.542289	
mm_118464.1	chr14	11553373	11553573	+	1	NA	NA	NA	-80	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.145000	0.711443	-91(CGCTTTAAGAGA,-,0.00),-90(GCTTTAAGAGAC,+,0.00)
mm_36863.1	chr4	107057374	107057574	-	1	NA	NA	NA	9392	NM_025500	56280	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0.035000	0.537313	
mm_56555.1	chr6	101150247	101150447	-	1	NA	NA	NA	227550	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.010000	0.368159	-88(GTATATATAAGC,-,0.00)
mm_36502.1	chr4	83462079	83462279	-	1	NA	NA	NA	24269	NM_001290527	101739	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	0.010000	0.313433	
mm_98071.1	chr11	86201266	86201466	+	1	NA	NA	NA	6	NR_130958	74038	Mm.171304	NR_130958	ENSMUSG00000085208	Brip1os	4632419I22Rik	BRCA1 interacting protein C-terminal helicase 1, opposite strand	ncRNA	0.070000	0.522388	75(GACTTTAAGAAG,-,0.00)
mm_75525.1	chr8	57305325	57305525	-	1	NA	NA	NA	15434	NR_110474	102636514		NR_110474	ENSMUSG00000100510	Uph	-	upperhand	ncRNA	0.020000	0.427861	
mm_123057.1	chr14	55660149	55660349	-	1	NA	NA	NA	259	NM_023397	67881	Mm.24601	NM_023397	ENSMUSG00000002329	Mdp1	1810034K20Rik|AI035604	magnesium-dependent phosphatase 1	protein-coding	0.035000	0.512438	-71(GATTTTATAAGG,-,0.00),86(GACTATAAGAGG,-,0.00)
mm_146732.1	chr18	15331711	15331911	-	1	NA	NA	NA	71188	NM_001308647	11829	Mm.250786	NM_009700	ENSMUSG00000024411	Aqp4	WCH4	aquaporin 4	protein-coding	0.000000	0.412935	
mm_35364.1	chr4	32425090	32425290	-	1	NA	NA	NA	7755	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.025000	0.442786	
mm_109528.1	chr12	111538253	111538453	+	1	NA	NA	NA	252	NM_173363	217869	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.145000	0.820896	
mm_27334.1	chr3	50398491	50398691	-	1	NA	NA	NA	45022	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.015000	0.398010	
mm_21636.1	chr2	164278326	164278526	-	1	NA	NA	NA	-119	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.005000	0.393035	-66(AGGTATAAAAGA,-,0.00),-36(GCTTTTATAGAA,+,0.00),55(CCTTTTATAACT,+,0.00)
mm_49285.1	chr6	17661918	17662118	+	1	NA	NA	NA	24920	NM_007604	12343	Mm.392504	NM_007604	ENSMUSG00000015733	Capza2	1110053K06Rik|AW208808|Cappa2	capping protein (actin filament) muscle Z-line, alpha 2	protein-coding	0.010000	0.417910	
mm_133389.1	chr16	84774069	84774269	+	1	NA	NA	NA	46	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.070000	0.661692	
mm_72800.1	chr8	87460418	87460618	+	1	NA	NA	NA	12074	NM_019626	12404	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0.010000	0.522388	
mm_101488.1	chr11	31370024	31370224	-	1	NA	NA	NA	-63	NM_011491	20856	Mm.32506	NM_011491	ENSMUSG00000020303	Stc2	AW125853|Stc2l|mustc2	stanniocalcin 2	protein-coding	0.080000	0.631841	
mm_164814.1	chr18	33321785	33321985	+	1	NA	NA	NA	-108023	NM_133774	170459	Mm.127058	NM_133774	ENSMUSG00000024378	Stard4	4632419C16Rik|9030213J02Rik	StAR-related lipid transfer (START) domain containing 4	protein-coding	0.000000	0.353234	
mm_153484.1	chr19	41302370	41302570	-	1	NA	NA	NA	-38466	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.015000	0.606965	
mm_68421.1	chr7	109731612	109731812	-	1	NA	NA	NA	20	NM_020051	56787	Mm.29275	NM_020051	ENSMUSG00000035951	Ascl3	Sgn1|bHLHa42	achaete-scute family bHLH transcription factor 3	protein-coding	0.010000	0.437811	
mm_143046.1	chr17	56874307	56874507	-	1	NA	NA	NA	40	NM_001039114	328845	Mm.179421	NM_001039114	ENSMUSG00000024207	Acsbg2	Bgr	acyl-CoA synthetase bubblegum family member 2	protein-coding	0.005000	0.547264	
mm_56246.1	chr6	90736667	90736867	-	1	NA	NA	NA	-20238	NM_001134383	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.120000	0.726368	
mm_117230.1	chr13	64248536	64248736	-	1	NA	NA	NA	-64	NR_045798	66503	Mm.443331	NR_045798	ENSMUSG00000097101	1810034E14Rik	-	RIKEN cDNA 1810034E14 gene	ncRNA	0.050000	0.611940	
mm_71847.1	chr8	68905720	68905920	+	1	NA	NA	NA	25265	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.005000	0.373134	
mm_15286.1	chr2	155276645	155276845	+	1	NA	NA	NA	381	NR_046364	66734	Mm.196239	NM_025735	ENSMUSG00000027602	Map1lc3a	1010001H21Rik|4922501H04Rik|LC3|LC3a	microtubule-associated protein 1 light chain 3 alpha	protein-coding	0.110000	0.761194	
mm_128590.1	chr15	58119214	58119414	-	1	NA	NA	NA	15768	NM_027435	70472	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0.005000	0.417910	
mm_96113.1	chr11	60699634	60699834	+	1	NA	NA	NA	44	NM_008502	16897	Mm.285453	NM_008502	ENSMUSG00000020536	Llgl1	AI325176|Lgl1|Llglh|Mgl1	lethal giant larvae homolog 1 (Drosophila)	protein-coding	0.160000	0.810945	
mm_47119.1	chr5	119671288	119671488	-	1	NA	NA	NA	155	NM_011535	21386	Mm.219139	NM_011535	ENSMUSG00000018604	Tbx3	D5Ertd189e	T-box 3	protein-coding	0.070000	0.527363	-61(TCCTTTAAAAAA,-,0.00)
mm_8011.1	chr1	134803722	134803922	-	1	NA	NA	NA	-101	NR_015606	329251	Mm.188709	NM_001081307	ENSMUSG00000073557	Ppp1r12b	1810037O03Rik|9530009M10Rik|AI132431|Mypt2	protein phosphatase 1, regulatory (inhibitor) subunit 12B	protein-coding	0.020000	0.477612	
mm_144675.1	chr18	34624948	34625148	+	1	NA	NA	NA	15	NM_001166406	19348	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	0.060000	0.592040	
mm_23719.1	chr3	69005837	69006037	+	1	NA	NA	NA	965	NM_133786	70099	Mm.206841	NM_133786	ENSMUSG00000034349	Smc4	2500002A22Rik|C79747|SMC-4|Smc4l1	structural maintenance of chromosomes 4	protein-coding	0.100000	0.701493	
mm_25958.1	chr3	132629723	132629923	+	1	NA	NA	NA	-368	NM_001270430	433653		NM_001270430	ENSMUSG00000091721	Gimd1	EG433653|Gm5549	GIMAP family P-loop NTPase domain containing 1	protein-coding	0.010000	0.398010	
mm_124543.1	chr14	122465370	122465570	-	1	NA	NA	NA	188	NM_022987	65100	Mm.390761	NM_022987	ENSMUSG00000041703	Zic5	1700049L20Rik|Opr	zinc finger protein of the cerebellum 5	protein-coding	0.035000	0.532338	
mm_67778.1	chr7	97211160	97211360	-	1	NA	NA	NA	114704	NM_001177412	244144	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.020000	0.432836	
mm_36906.1	chr4	107923467	107923667	-	1	NA	NA	NA	22	NM_009949	12896	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0.090000	0.696517	
mm_115155.1	chr13	106947034	106947234	+	1	NA	NA	NA	5	NM_025447	66254	Mm.9563	NM_025447	ENSMUSG00000021692	Dimt1	1500031M22Rik|AV111347|Dimt1l	DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)	protein-coding	0.095000	0.666667	
mm_43389.1	chr5	135733456	135733656	+	1	NA	NA	NA	2333	NR_106001	102466791		NR_106001	ENSMUSG00000099197	Mir7034	Gm27372|mmu-mir-7034	microRNA 7034	ncRNA	0.060000	0.601990	
mm_170901.1	chr2	30069469	30069669	+	1	NA	NA	NA	3095	NM_001204875	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.015000	0.368159	
mm_53293.1	chr6	129036500	129036700	+	1	NA	NA	NA	-9301	NR_024262	232408	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.000000	0.492537	
mm_54865.1	chr6	42597539	42597739	-	1	NA	NA	NA	-267	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.015000	0.467662	
mm_72905.1	chr8	90900022	90900222	+	1	NA	NA	NA	-32127	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.020000	0.393035	71(TTCTTTAAAAGT,-,0.00)
mm_3727.1	chr1	155059598	155059798	+	1	NA	NA	NA	39938	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.040000	0.611940	-44(TTCTATAAATAG,-,0.00)
mm_141230.1	chr17	27426373	27426573	-	1	NA	NA	NA	68376	NR_106077	102466228		NR_106077	ENSMUSG00000106215	Mir7218	mmu-mir-7218	microRNA 7218	ncRNA	0.025000	0.562189	
mm_136024.1	chr16	76359622	76359822	-	1	NA	NA	NA	13327	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.010000	0.343284	
mm_101540.1	chr11	33527276	33527476	-	1	NA	NA	NA	-13630	NM_023146	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.005000	0.383085	
mm_142141.1	chr17	35979173	35979373	-	1	NA	NA	NA	194	NM_145487	75210	Mm.40036	NM_145487	ENSMUSG00000038500	Prr3	4930540G07Rik|Cat56	proline-rich polypeptide 3	protein-coding	0.085000	0.651741	
mm_102291.1	chr11	55409884	55410084	-	1	NA	NA	NA	10096	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.015000	0.517413	
mm_106609.1	chr11	120796287	120796487	-	1	NA	NA	NA	8	NM_026824	68730	Mm.180622	NM_026824	ENSMUSG00000025155	Dus1l	1110032N12Rik	dihydrouridine synthase 1-like (S. cerevisiae)	protein-coding	0.125000	0.691542	
mm_156061.1	chrX	109160175	109160375	+	1	NA	NA	NA	-36481	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.005000	0.303483	-62(GCTTTTATAGAA,+,0.00)
mm_127380.1	chr15	100870802	100871002	+	1	NA	NA	NA	257	NM_001077499	20273	Mm.385012	NM_011323	ENSMUSG00000023033	Scn8a	AI853486|C630029C19Rik|NaCh6|Nav1.6|dmu|med|mnd-2|mnd2|nmf2|nmf335|nmf58|nur14|seal	sodium channel, voltage-gated, type VIII, alpha	protein-coding	0.210000	0.845771	
mm_18682.1	chr2	71367449	71367649	-	1	NA	NA	NA	5	NM_172436	78830	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.125000	0.681592	
mm_85488.1	chr9	106112384	106112584	-	1	NA	NA	NA	-15793	NM_026763	68553	Mm.28854	NM_026763	ENSMUSG00000032572	Col6a4	1110001D15Rik|AI413310|AU023415|Dvwa|EG235580|Vwa6	collagen, type VI, alpha 4	protein-coding	0.005000	0.358209	
mm_77077.1	chr8	110444289	110444489	-	1	NA	NA	NA	57967	NR_105058	100861869	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.005000	0.532338	
mm_68259.1	chr7	105591750	105591950	-	1	NA	NA	NA	8266	NM_017371	15458	Mm.3485	NM_017371	ENSMUSG00000030895	Hpx	Hpxn|hx	hemopexin	protein-coding	0.010000	0.522388	
mm_111919.1	chr12	108875475	108875675	-	1	NA	NA	NA	17623	NM_001164488	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.010000	0.507463	
mm_111889.1	chr12	108275224	108275424	-	1	NA	NA	NA	93	NM_001159910	668158	Mm.482792	NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010	coiled-coil domain containing 85C	protein-coding	0.155000	0.820896	
mm_16114.1	chr2	169708173	169708373	+	1	NA	NA	NA	74627	NM_080455	228911	Mm.315789	NM_080455	ENSMUSG00000047907	Tshz2	2900073F20Rik|B830045G17|Mtsh2|Sdccag33l|Tsh2|Zfp218|mKIAA4248|teashirt2	teashirt zinc finger family member 2	protein-coding	0.015000	0.462687	
mm_118337.1	chr13	114337024	114337224	-	1	NA	NA	NA	50970	NM_010887	17993	Mm.253142	NM_010887	ENSMUSG00000021764	Ndufs4	6720411N02Rik|C1-18k	NADH dehydrogenase (ubiquinone) Fe-S protein 4	protein-coding	0.005000	0.358209	-49(TTCTATATAAAG,-,0.00)
mm_4132.1	chr1	170630810	170631010	+	1	NA	NA	NA	-13622	NM_177068	320078	Mm.287131	NM_177068	ENSMUSG00000038463	Olfml2b	1110018N05Rik|4832415H08Rik|AI467542	olfactomedin-like 2B	protein-coding	0.015000	0.462687	
mm_7276.1	chr1	97128203	97128403	-	1	NA	NA	NA	0	NM_028942	74441	Mm.60362	NM_028942	ENSMUSG00000026331	Slco6c1	4933404A18Rik|C79179	solute carrier organic anion transporter family, member 6c1	protein-coding	0.020000	0.472637	
mm_161506.1	chr15	98195351	98195551	-	1	NA	NA	NA	91	NM_001011733	545140	Mm.432690	NM_001011733	ENSMUSG00000075427	Olfr288	C85333|GA_x5J8B7W76D0-7609197-7608973|MOR286-3P	olfactory receptor 288	protein-coding	0.010000	0.567164	-32(CCCTATAAACGC,+,0.00)
mm_33074.1	chr4	123858248	123858448	+	1	NA	NA	NA	-46665	NM_019660	56309	Mm.446553	NM_019660	ENSMUSG00000028647	Mycbp	5730488M09Rik|AW552132|AW742590|Amy-1	MYC binding protein	protein-coding	0.025000	0.497512	
mm_44835.1	chr5	34157159	34157359	-	1	NA	NA	NA	12165	NM_146159	231123	Mm.319286	NM_146159	ENSMUSG00000079555	Haus3	D4S43h|D5H4S43|D5H4S43E	HAUS augmin-like complex, subunit 3	protein-coding	0.000000	0.323383	
mm_108708.1	chr12	87026192	87026392	+	1	NA	NA	NA	-272	NM_172583	217733	Mm.110032	NM_172583	ENSMUSG00000034145	Tmem63c	4932420N09|9330187M14Rik	transmembrane protein 63c	protein-coding	0.025000	0.572139	
mm_46152.1	chr5	96077053	96077253	-	1	NA	NA	NA	84394	NM_001285511	231464	Mm.28374	NM_144910	ENSMUSG00000034724	Cnot6l	4932442K20Rik	CCR4-NOT transcription complex, subunit 6-like	protein-coding	0.025000	0.472637	
mm_52040.1	chr6	96356995	96357195	+	1	NA	NA	NA	-190890	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo	0.000000	0.348259	
mm_51644.1	chr6	86019148	86019348	+	1	NA	NA	NA	2057	NM_012013	26910	Mm.8024	NM_012013	ENSMUSG00000030001	Figla	FIGalpha|bHLHc8	folliculogenesis specific basic helix-loop-helix	protein-coding	0.010000	0.512438	
mm_153411.1	chr19	40588255	40588455	-	1	NA	NA	NA	108	NM_019698	56454	Mm.233117	NM_019698	ENSMUSG00000025007	Aldh18a1	2810433K04Rik|AI429789|Pycs	aldehyde dehydrogenase 18 family, member A1	protein-coding	0.095000	0.666667	
mm_128347.1	chr15	39784761	39784961	-	1	NA	NA	NA	-12184	NR_045788	100503072	Mm.446661	NR_045788	ENSMUSG00000087695	Gm16291	OTTMUSG00000033244	predicted gene 16291	ncRNA	0.010000	0.492537	
mm_65728.1	chr7	28380978	28381178	-	1	NA	NA	NA	-1850	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.045000	0.626866	
mm_24504.1	chr3	92483855	92484055	+	1	NA	NA	NA	1926	NM_009264	20753	Mm.331191	NM_009264	ENSMUSG00000050359	Sprr1a	AI528815|SPR1a|mSPRR1A	small proline-rich protein 1A	protein-coding	0.000000	0.417910	
mm_63281.1	chr7	126766341	126766541	+	1	NA	NA	NA	27	NM_024228	68616	Mm.246881	NM_024228	ENSMUSG00000030703	Gdpd3	1110015E22Rik	glycerophosphodiester phosphodiesterase domain containing 3	protein-coding	0.045000	0.626866	
mm_47351.1	chr5	122647466	122647666	-	1	NA	NA	NA	-2858	NM_001284402	18439	Mm.42026	NM_011027	ENSMUSG00000029468	P2rx7	AI467586|P2X(7)|P2X7R	purinergic receptor P2X, ligand-gated ion channel, 7	protein-coding	0.010000	0.557214	
mm_132675.1	chr16	42908511	42908711	+	1	NA	NA	NA	966	NM_001285805	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|ODA-8S|Oda8|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.000000	0.348259	
mm_168646.1	chr11	85240414	85240614	+	1	NA	NA	NA	5348	NR_028329	654810	Mm.209580	NR_028329	ENSMUSG00000085628	Appbp2os	D630032N06Rik	amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand	ncRNA	0.010000	0.462687	
mm_18748.1	chr2	73351852	73352052	-	1	NA	NA	NA	34528	NM_001276443	68526	Mm.451014	NM_001080707	ENSMUSG00000041762	Gpr155	1110017O10Rik|DEPDC3|F730029F15Rik|PGR22	G protein-coupled receptor 155	protein-coding	0.035000	0.492537	
mm_122454.1	chr14	45318438	45318638	-	1	NA	NA	NA	34	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.160000	0.796020	
mm_111736.1	chr12	103863513	103863713	-	1	NA	NA	NA	6	NM_001252569	20700	Mm.439692	NM_009243	ENSMUSG00000066366	Serpina1a	Aat-2|Aat2|Dom1|PI1|Spi1-1|Spi1-3	serine (or cysteine) peptidase inhibitor, clade A, member 1A	protein-coding	0.010000	0.522388	20(GCTTAAATACAG,+,0.00)
mm_165621.1	chr3	62396324	62396524	+	1	NA	NA	NA	57647	NM_001081295	622434	Mm.153974	NM_001081295	ENSMUSG00000036885	Arhgef26	4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF	Rho guanine nucleotide exchange factor (GEF) 26	protein-coding	0.015000	0.452736	
mm_79907.1	chr9	65435680	65435880	+	1	NA	NA	NA	-2	NM_027134	69606	Mm.287956	NM_027134	ENSMUSG00000059183	Mtfmt	2310020P08Rik	mitochondrial methionyl-tRNA formyltransferase	protein-coding	0.080000	0.666667	
mm_127868.1	chr15	8430655	8430855	-	1	NA	NA	NA	13708	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.000000	0.442786	
mm_167911.1	chrX	92837371	92837571	+	1	NA	NA	NA	-237899	NM_173783	215641	Mm.327999	NM_173783	ENSMUSG00000067649	Mageb18	B430216B18Rik	melanoma antigen family B, 18	protein-coding	0.000000	0.383085	
mm_83211.1	chr9	42033820	42034020	-	1	NA	NA	NA	90369	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.035000	0.557214	
mm_103402.1	chr11	75439381	75439581	-	1	NA	NA	NA	20	NM_008878	18816	Mm.279733	NM_008878	ENSMUSG00000038224	Serpinf2	AI747498|Pli|Serpimf2	serine (or cysteine) peptidase inhibitor, clade F, member 2	protein-coding	0.020000	0.621891	
mm_39786.1	chr5	30232592	30232792	+	1	NA	NA	NA	111	NR_137634	28042	Mm.168854	NM_027652	ENSMUSG00000075703	Selenoi	4933402G07Rik|AI448296|AI452230|C79563|D5Wsu178e|Ept1|SELI|mKIAA1724	selenoprotein I	protein-coding	0.105000	0.641791	
mm_69144.1	chr7	127052556	127052756	-	1	NA	NA	NA	-679	NM_026918	69036	Mm.21835	NM_026918	ENSMUSG00000049350	Zg16	1810010M01Rik|AI593689|ZG16p	zymogen granule protein 16	protein-coding	0.000000	0.467662	-34(TGGTATAAAAGC,-,0.00)
mm_100736.1	chr11	4095216	4095416	-	1	NA	NA	NA	115	NM_026443	67900	Mm.41719	NM_026443	ENSMUSG00000004748	Mtfp1	1700020C11Rik|2610507A21Rik|AV005788|Mtp18	mitochondrial fission process 1	protein-coding	0.080000	0.621891	
mm_141681.1	chr17	33930984	33931184	-	1	NA	NA	NA	1190	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.040000	0.582090	
mm_20161.1	chr2	122150816	122151016	-	1	NA	NA	NA	3229	NM_009735	12010	Mm.163	NM_009735	ENSMUSG00000060802	B2m	Ly-m11|beta2-m|beta2m	beta-2 microglobulin	protein-coding	0.035000	0.482587	
mm_84964.1	chr9	83806091	83806291	-	1	NA	NA	NA	114	NM_148941	83603	Mm.83949	NM_148941	ENSMUSG00000032262	Elovl4	-	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4	protein-coding	0.115000	0.726368	
mm_5414.1	chr1	33864571	33864771	-	1	NA	NA	NA	-25757	NM_001161816	433287	Mm.383632	NM_001161816		Gm15455	AA692849|OTTMUSG00000022109	predicted gene 15455	protein-coding	0.015000	0.497512	
mm_99640.1	chr11	105292032	105292232	+	1	NA	NA	NA	-514	NM_008626	17534	Mm.235616	NM_008626	ENSMUSG00000020695	Mrc2	Endo180|mKIAA0709|uPARAP	mannose receptor, C type 2	protein-coding	0.040000	0.621891	
mm_149898.1	chr19	25505678	25505878	+	1	NA	NA	NA	72	NM_015826	50796	Mm.391208	NM_015826	ENSMUSG00000024837	Dmrt1	-	doublesex and mab-3 related transcription factor 1	protein-coding	0.075000	0.587065	
mm_15482.1	chr2	157561785	157561985	+	1	NA	NA	NA	1807	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.040000	0.572139	-100(CCCCAGAAAAGC,-,0.00)
mm_112534.1	chr13	9601587	9601787	+	1	NA	NA	NA	162123	NM_001347471	66505	Mm.397307	NM_144516	ENSMUSG00000021156	Zmynd11	2210402G22Rik|BS69	zinc finger, MYND domain containing 11	protein-coding	0.005000	0.512438	
mm_78400.1	chr9	28920882	28921082	+	1	NA	NA	NA	1042147	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.010000	0.323383	-3(CCCTTAAAACGC,+,0.00)
mm_157169.1	chrX	9469166	9469366	-	1	NA	NA	NA	58	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.398010	
mm_112263.1	chr12	114048641	114048841	-	1	NA	NA	NA	420725	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.005000	0.407960	71(CTCTTTTAAAAG,-,0.00),72(TCTTTTAAAAGG,+,0.00),72(TCTTTTAAAAGG,-,0.00),73(CTTTTAAAAGGT,+,0.00)
mm_89216.1	chr10	86778932	86779132	+	1	NA	NA	NA	27	NM_175331	103466	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.105000	0.726368	
mm_85378.1	chr9	103225913	103226113	-	1	NA	NA	NA	4273	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.020000	0.552239	
mm_57360.1	chr6	124761241	124761441	-	1	NA	NA	NA	-4854	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.050000	0.577114	
mm_9837.1	chr1	184034067	184034267	-	1	NA	NA	NA	-169	NM_028516	73363	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.055000	0.537313	
mm_120680.1	chr14	70619043	70619243	+	1	NA	NA	NA	-574	NM_001252666	13829	Mm.210863	NM_013514	ENSMUSG00000022099	Dmtn	AI325486|Epb4.9|Epb49|dematin	dematin actin binding protein	protein-coding	0.010000	0.557214	
mm_45535.1	chr5	72763623	72763823	-	1	NA	NA	NA	-10946	NM_001122754	22165	Mm.3264	NM_013698	ENSMUSG00000054892	Txk	A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk	TXK tyrosine kinase	protein-coding	0.020000	0.522388	
mm_70265.1	chr8	3587366	3587566	+	1	NA	NA	NA	16	NM_001347111	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.055000	0.577114	
mm_92347.1	chr10	75860118	75860318	-	1	NA	NA	NA	32	NM_010798	17319	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor	protein-coding	0.095000	0.646766	
mm_153136.1	chr19	34244915	34245115	-	1	NA	NA	NA	10358	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.050000	0.537313	
mm_101360.1	chr11	23740869	23741069	-	1	NA	NA	NA	30001	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.010000	0.358209	
mm_57372.1	chr6	124805631	124805831	-	1	NA	NA	NA	-2930	NM_001306051	14794	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.075000	0.656716	
mm_40506.1	chr5	57731584	57731784	+	1	NA	NA	NA	13603	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.010000	0.432836	
mm_134015.1	chr16	4879723	4879923	-	1	NA	NA	NA	28	NM_145359	207740	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.140000	0.681592	
mm_64438.1	chr7	142653504	142653704	+	1	NA	NA	NA	1392	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.010000	0.442786	-96(TGTTTTTAAAGG,-,0.00),-95(GTTTTTAAAGGG,+,0.00),-95(GTTTTTAAAGGG,-,0.00),-77(GTTTTTAAAGTT,+,0.00)
mm_149580.1	chr19	15599110	15599310	+	1	NA	NA	NA	325412	NM_001205339	107272	Mm.289936	NM_177420	ENSMUSG00000024640	Psat1	D8Ertd814e|EPIP|PSA|Psat	phosphoserine aminotransferase 1	protein-coding	0.020000	0.412935	
mm_142049.1	chr17	35534150	35534350	-	1	NA	NA	NA	1049	NM_020576	57390	Mm.34201	NM_020576	ENSMUSG00000024409	Psors1c2	AI448740|Pcg|SPR1	psoriasis susceptibility 1 candidate 2 (human)	protein-coding	0.010000	0.552239	
mm_14153.1	chr2	126568305	126568505	+	1	NA	NA	NA	15381	NM_011978	26458	Mm.290044	NM_011978	ENSMUSG00000027359	Slc27a2	ACSVL1|FATP2|VLCS|Vlac|Vlacs	solute carrier family 27 (fatty acid transporter), member 2	protein-coding	0.000000	0.462687	
mm_23367.1	chr3	55324290	55324490	+	1	NA	NA	NA	81864	NM_001195538	13175	Mm.393242	NM_019978	ENSMUSG00000027797	Dclk1	1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369	doublecortin-like kinase 1	protein-coding	0.005000	0.333333	
mm_160556.1	chr9	49340321	49340521	+	1	NA	NA	NA	-241	NM_010077	13489	Mm.41970	NM_010077	ENSMUSG00000032259	Drd2	D2R|Drd-2	dopamine receptor D2	protein-coding	0.150000	0.810945	
mm_119486.1	chr14	47374083	47374283	+	1	NA	NA	NA	323	NM_001145953	16854	Mm.248615	NM_010705	ENSMUSG00000050335	Lgals3	GBP|L-34|Mac-2|gal3	lectin, galactose binding, soluble 3	protein-coding	0.045000	0.577114	
mm_37360.1	chr4	120746839	120747039	-	1	NA	NA	NA	237	NM_001081142	60613	Mm.249977	NM_001081142	ENSMUSG00000028631	Kcnq4	-	potassium voltage-gated channel, subfamily Q, member 4	protein-coding	0.120000	0.746269	
mm_166.1	chr1	12990319	12990519	+	1	NA	NA	NA	716	NM_172841	240726	Mm.24481	NM_172841	ENSMUSG00000025938	Slco5a1	4732454B15|A630033C23Rik|AA407151	solute carrier organic anion transporter family, member 5A1	protein-coding	0.050000	0.562189	
mm_8093.1	chr1	135840813	135841013	-	1	NA	NA	NA	52	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.045000	0.552239	
mm_134319.1	chr16	15966563	15966763	-	1	NA	NA	NA	79377	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.000000	0.532338	
mm_13991.1	chr2	121866326	121866526	+	1	NA	NA	NA	-544	NM_199038	319996	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	0.030000	0.477612	
mm_135700.1	chr16	52452901	52453101	-	1	NA	NA	NA	80	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.090000	0.721393	
mm_67487.1	chr7	80720804	80721004	-	1	NA	NA	NA	-32027	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.015000	0.452736	
mm_20847.1	chr2	148046127	148046327	-	1	NA	NA	NA	-279	NM_001291065	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.110000	0.751244	
mm_85229.1	chr9	97369911	97370111	-	1	NA	NA	NA	-53	NM_030219	78911	Mm.108347	NM_030219	ENSMUSG00000032451	Trim42	4930486B16Rik	tripartite motif-containing 42	protein-coding	0.010000	0.522388	
mm_115493.1	chr13	3767074	3767274	-	1	NA	NA	NA	37144	NM_027416	70405	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0.000000	0.467662	
mm_92669.1	chr10	80520179	80520379	-	1	NA	NA	NA	18845	NM_026094	67331	Mm.52511	NM_026094	ENSMUSG00000003341	Atp8b3	1700042F02Rik|1700056N23Rik|ATPIK|SAPLT	ATPase, class I, type 8B, member 3	protein-coding	0.050000	0.542289	
mm_6789.1	chr1	84140905	84141105	-	1	NA	NA	NA	77956	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.442786	
mm_95169.1	chr11	40733645	40733845	+	1	NA	NA	NA	84	NM_001290697	52653	Mm.276504	NM_026023	ENSMUSG00000020328	Nudcd2	-	NudC domain containing 2	protein-coding	0.075000	0.517413	60(TCTTAAATGGGC,+,0.00)
mm_108741.1	chr12	88724848	88725048	+	1	NA	NA	NA	-69556	NM_001198587	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.020000	0.532338	
mm_138867.1	chr17	43036265	43036465	+	1	NA	NA	NA	19810	NM_178589	94185	Mm.200792	NM_178589	ENSMUSG00000023915	Tnfrsf21	AA959878|DR6|R74815|TR7	tumor necrosis factor receptor superfamily, member 21	protein-coding	0.010000	0.482587	
mm_168122.1	chr10	20146198	20146398	+	1	NA	NA	NA	-2622	NM_008635	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.025000	0.542289	
mm_120798.1	chr14	74737148	74737348	+	1	NA	NA	NA	4951	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.000000	0.417910	
mm_42382.1	chr5	114933536	114933736	+	1	NA	NA	NA	-8566	NM_028211	72357	Mm.292672	NM_028211	ENSMUSG00000029559	2210016L21Rik	-	RIKEN cDNA 2210016L21 gene	protein-coding	0.030000	0.532338	
mm_27263.1	chr3	38484685	38484885	-	1	NA	NA	NA	31	NM_001167883	99696	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.155000	0.800995	
mm_89384.1	chr10	89686293	89686493	+	1	NA	NA	NA	30	NR_130956	69002	Mm.293947	NR_130956	ENSMUSG00000097383	1500026H17Rik	-	RIKEN cDNA 1500026H17 gene	ncRNA	0.075000	0.676617	
mm_146381.1	chr18	82585106	82585306	+	1	NA	NA	NA	30698	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.030000	0.522388	
mm_84154.1	chr9	59486516	59486716	-	1	NA	NA	NA	-242	NM_019927	23806	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	0.160000	0.751244	
mm_93912.1	chr10	127060085	127060285	-	1	NA	NA	NA	-1	NM_001033262	216438	Mm.37892	NM_001033262	ENSMUSG00000040502	March9	AI608492|BC019560	membrane-associated ring finger (C3HC4) 9	protein-coding	0.155000	0.796020	
mm_169372.1	chr14	34355368	34355568	-	1	NA	NA	NA	-75	NM_183278	69134	Mm.27156	NM_183278	ENSMUSG00000043681	Fam25c	2200001I15Rik|Fam25	family with sequence similarity 25, member C	protein-coding	0.005000	0.557214	
mm_85030.1	chr9	88475254	88475454	-	1	NA	NA	NA	7043	NM_019666	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.000000	0.343284	-34(ATTTTTATAGTC,+,0.00)
mm_87699.1	chr10	59861367	59861567	+	1	NA	NA	NA	-18124	NM_019965	56709	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.020000	0.547264	
mm_172127.1	chr6	3201354	3201554	+	1	NA	NA	NA	-87065	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.090000	0.512438	
mm_20985.1	chr2	151980108	151980308	-	1	NA	NA	NA	11	NM_146127	73847	Mm.272444	NM_028666	ENSMUSG00000027459	Fam110a	1700008J10Rik|5430432M24Rik|AI747080	family with sequence similarity 110, member A	protein-coding	0.095000	0.676617	
mm_18129.1	chr2	45004582	45004782	-	1	NA	NA	NA	18495	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.005000	0.432836	
mm_147964.1	chr18	67134077	67134277	-	1	NA	NA	NA	617	NM_010307	14680	Mm.440746	NM_010307	ENSMUSG00000024524	Gnal	2610011C15Rik|9630020G10Rik|Galphaolf|Gna10|Golf	guanine nucleotide binding protein, alpha stimulating, olfactory type	protein-coding	0.060000	0.557214	
mm_53878.1	chr6	3182912	3183112	-	1	NA	NA	NA	-105507	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.055000	0.641791	
mm_62617.1	chr7	107209345	107209545	+	1	NA	NA	NA	0	NM_029660	76572	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	0.110000	0.701493	
mm_135653.1	chr16	52400300	52400500	-	1	NA	NA	NA	52681	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.348259	
mm_170724.1	chr2	150484989	150485189	-	1	NA	NA	NA	-26	NM_001034900	545471	Mm.451002	NM_001034900	ENSMUSG00000074731	Zfp345	OTTMUSG00000015743	zinc finger protein 345	protein-coding	0.020000	0.532338	
mm_2913.1	chr1	132008241	132008441	+	1	NA	NA	NA	736	NM_007923	13714	Mm.254233	NM_007923	ENSMUSG00000026436	Elk4	2310011G17Rik|A130026I01Rik|BB162516|SAP-1|Sap1	ELK4, member of ETS oncogene family	protein-coding	0.075000	0.597015	
mm_129515.1	chr15	79062667	79062867	-	1	NA	NA	NA	92	NM_144849	223690	Mm.24262	NM_144849	ENSMUSG00000033055	Ankrd54	C730048E16Rik|EST1068184|EST475269|Liar	ankyrin repeat domain 54	protein-coding	0.165000	0.741294	
mm_112297.1	chr12	114612611	114612811	-	1	NA	NA	NA	-99017	NR_106063	102465664		NR_106063	ENSMUSG00000098357	Mir7094-2	Gm27508|mmu-mir-7094-2	microRNA 7094-2	ncRNA	0.000000	0.427861	
mm_149837.1	chr19	24997323	24997523	+	1	NA	NA	NA	-2106	NM_028785	76088	Mm.102485	NM_028785	ENSMUSG00000052085	Dock8	1200017A24Rik|5830472H07Rik|A130095G14Rik|AI461977	dedicator of cytokinesis 8	protein-coding	0.020000	0.507463	
mm_142568.1	chr17	46675061	46675261	-	1	NA	NA	NA	-906	NM_144857	224823	Mm.45101	NM_144857	ENSMUSG00000023971	Rrp36	-	ribosomal RNA processing 36 homolog (S. cerevisiae)	protein-coding	0.015000	0.537313	
mm_108127.1	chr12	75983793	75983993	+	1	NA	NA	NA	74790	NR_039560	100628610		NR_039560	ENSMUSG00000092922	Mir5101	mmu-mir-5101|mu-mir-5101	microRNA 5101	ncRNA	0.010000	0.442786	
mm_109381.1	chr12	109709508	109709708	+	1	NA	NA	NA	548	NR_029880	723858		NR_029880	ENSMUSG00000065498	Mir379	Mirn379|mir-379|mmu-mir-379	microRNA 379	ncRNA	0.000000	0.368159	
mm_59704.1	chr7	28692938	28693138	+	1	NA	NA	NA	-106	NM_001163702	233040	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	0.045000	0.601990	
mm_39151.1	chr4	155397970	155398170	-	1	NA	NA	NA	-1	NM_008072	14403	Mm.388925	NM_008072	ENSMUSG00000029054	Gabrd	AI853201	gamma-aminobutyric acid (GABA) A receptor, subunit delta	protein-coding	0.130000	0.756219	
mm_110640.1	chr12	58268518	58268718	-	1	NA	NA	NA	640	NM_025809	66864	Mm.280563	NM_025809	ENSMUSG00000045930	Clec14a	1200003C23Rik|AI642649	C-type lectin domain family 14, member a	protein-coding	0.050000	0.621891	
mm_99520.1	chr11	103133270	103133470	+	1	NA	NA	NA	11	NM_027658	71059	Mm.273871	NM_027658	ENSMUSG00000043372	Hexim2	4933402L21Rik	hexamethylene bis-acetamide inducible 2	protein-coding	0.025000	0.592040	
mm_173081.1	chrX	142297897	142298097	+	1	NA	NA	NA	492	NR_002883	434858	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.005000	0.388060	-100(TGGTATTAAAGA,-,0.00)
mm_1496.1	chr1	71913418	71913618	+	1	NA	NA	NA	25406	NR_027659	667931	Mm.214128	NR_027658	ENSMUSG00000099707	Gm8883	EG667931|Gm554	predicted gene 8883	ncRNA	0.020000	0.482587	-35(TCCCTTTAAAAG,-,0.00),-34(CCCTTTAAAAGT,-,0.00),-33(CCTTTAAAAGTC,+,0.00)
mm_11125.1	chr2	28229382	28229582	+	1	NA	NA	NA	23793	NM_019498	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.045000	0.572139	
mm_18773.1	chr2	73486371	73486571	-	1	NA	NA	NA	-718	NM_001289723	215280	Mm.223504	NM_153138	ENSMUSG00000075284	Wipf1	AI115543|D2Ertd120e|WIP|Waspip	WAS/WASL interacting protein family, member 1	protein-coding	0.025000	0.537313	
mm_79615.1	chr9	58640648	58640848	+	1	NA	NA	NA	58508	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.010000	0.467662	
mm_111448.1	chr12	98259331	98259531	-	1	NA	NA	NA	28	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.085000	0.671642	
mm_59653.1	chr7	28179411	28179611	+	1	NA	NA	NA	28	NM_010092	13549	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0.080000	0.671642	
mm_48243.1	chr5	137786087	137786287	-	1	NA	NA	NA	514	NM_144913	231803	Mm.61193	NM_144913	ENSMUSG00000029726	Mepce	Bcdin3|D5Wsu46e	methylphosphate capping enzyme	protein-coding	0.090000	0.646766	
mm_161753.1	chr17	35074233	35074433	-	1	NA	NA	NA	131	NM_033478	114654	Mm.246697	NM_033478	ENSMUSG00000073413	Ly6g6d	A930024F17Rik|G6d|G6f|MEGT1|NG25|NG32	lymphocyte antigen 6 complex, locus G6D	protein-coding	0.030000	0.621891	
mm_42845.1	chr5	122168031	122168231	+	1	NA	NA	NA	9852	NM_013636	19047	Mm.280784	NM_013636	ENSMUSG00000004455	Ppp1cc	PP-1G|PP1|dis2m1	protein phosphatase 1, catalytic subunit, gamma isoform	protein-coding	0.020000	0.542289	
mm_80687.1	chr9	91377873	91378073	+	1	NA	NA	NA	9001	NM_009576	22774	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.075000	0.567164	
mm_70215.1	chr7	144932415	144932615	-	1	NA	NA	NA	-380	NR_039539	100628615		NR_039539	ENSMUSG00000092633	Mir3962	mmu-mir-3962|mu-mir-3962	microRNA 3962	ncRNA	0.030000	0.497512	
mm_121449.1	chr14	120430778	120430978	+	1	NA	NA	NA	-47583	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.005000	0.278607	
mm_105285.1	chr11	102436705	102436905	-	1	NA	NA	NA	6483	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.025000	0.472637	
mm_14851.1	chr2	148499888	148500088	+	1	NA	NA	NA	-56453	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.015000	0.437811	-48(GTCCTTTTAAGG,-,0.00),-46(CCTTTTAAGGAC,+,0.00)
mm_161131.1	chr12	113074350	113074550	+	1	NA	NA	NA	-52	NM_029381	75671	Mm.23377	NM_029381	ENSMUSG00000012211	Tex22	1700028O09Rik|AV210422|Tep22	testis expressed gene 22	protein-coding	0.080000	0.631841	
mm_85085.1	chr9	91365697	91365897	-	1	NA	NA	NA	2	NM_009573	22771	Mm.335350	NM_009573	ENSMUSG00000032368	Zic1	ZIC|ZNF201	zinc finger protein of the cerebellum 1	protein-coding	0.080000	0.592040	
mm_5634.1	chr1	40436990	40437190	-	1	NA	NA	NA	-2539	NM_001025602	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.015000	0.432836	
mm_131033.1	chr16	3744099	3744299	+	1	NA	NA	NA	100	NM_148924	74120	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.090000	0.636816	
mm_157608.1	chrX	53757743	53757943	-	1	NA	NA	NA	-12	NM_001200013	75514	Mm.116929	NM_001200013	ENSMUSG00000054727	1700013H16Rik	Slx2|Xlr6	RIKEN cDNA 1700013H16 gene	protein-coding	0.050000	0.547264	
mm_100535.1	chr11	120629494	120629694	+	1	NA	NA	NA	3953	NM_010756	17134	Mm.268010	NM_010756	ENSMUSG00000051510	Mafg	AA545192|C630022N07Rik	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian)	protein-coding	0.060000	0.621891	
mm_136019.1	chr16	76318514	76318714	-	1	NA	NA	NA	54435	NM_173440	268903	Mm.74711	NM_173440	ENSMUSG00000048490	Nrip1	6030458L20Rik|8430438I05Rik|9630050P12|AA959574|AW456757|RIP140	nuclear receptor interacting protein 1	protein-coding	0.030000	0.507463	
mm_127694.1	chr15	102990423	102990623	+	1	NA	NA	NA	-16	NM_010466	15426	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.120000	0.631841	
mm_148104.1	chr18	74065255	74065455	-	1	NA	NA	NA	-406	NM_172632	225724	Mm.254517	NM_172632	ENSMUSG00000024558	Mapk4	A330097D03Rik|Erk3|Prkm4|p63Mapk	mitogen-activated protein kinase 4	protein-coding	0.060000	0.636816	
mm_163689.1	chr13	96924664	96924864	+	1	NA	NA	NA	75	NM_001166065	218476	Mm.483490	NM_001166065	ENSMUSG00000091387	Gcnt4	C2gnt3|Gm279|Gm73	glucosaminyl (N-acetyl) transferase 4, core 2 (beta-1,6-N-acetylglucosaminyltransferase)	protein-coding	0.090000	0.691542	
mm_105529.1	chr11	106300732	106300932	-	1	NA	NA	NA	1064	NM_008117	14599	Mm.343934	NM_008117	ENSMUSG00000020713	Gh	Gh1|Ghb1	growth hormone	protein-coding	0.030000	0.567164	
mm_90059.1	chr10	116275398	116275598	+	1	NA	NA	NA	-25876	NM_029928	19263	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0.020000	0.437811	
mm_137418.1	chr17	26131220	26131420	+	1	NA	NA	NA	-7366	NM_009733	12005	Mm.23684	NM_009733	ENSMUSG00000024182	Axin1	AI316800|Axin|Fu|Kb|Ki|fused|kinky|knobbly	axin 1	protein-coding	0.050000	0.631841	
mm_129538.1	chr15	79348096	79348296	-	1	NA	NA	NA	135	NM_001304831	17133	Mm.86646	NM_010755	ENSMUSG00000042622	Maff	-	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein F (avian)	protein-coding	0.055000	0.587065	
mm_3553.1	chr1	150421596	150421796	+	1	NA	NA	NA	-28641	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.015000	0.432836	
mm_151243.1	chr19	53891161	53891361	+	1	NA	NA	NA	-970	NM_011050	18569	Mm.1605	NM_011050	ENSMUSG00000024975	Pdcd4	D19Ucla1|Ma3|Tis	programmed cell death 4	protein-coding	0.015000	0.517413	
mm_104192.1	chr11	87828217	87828417	-	1	NA	NA	NA	-2203	NM_080420	76113	Mm.41236	NM_080420	ENSMUSG00000009356	Lpo	5830499B15Rik	lactoperoxidase	protein-coding	0.000000	0.467662	
mm_161162.1	chr13	27780704	27780904	-	1	NA	NA	NA	0	NM_026206	67505	Mm.49048	NM_026206	ENSMUSG00000060738	Prl7c1	1600017N11Rik|Ghd20|PLP-O|Prlpo|Prplo	prolactin family 7, subfamily c, member 1	protein-coding	0.010000	0.467662	
mm_17597.1	chr2	30801620	30801820	-	1	NA	NA	NA	17	NM_198000	73598	Mm.34166	NM_198000	ENSMUSG00000044320	1700001O22Rik	1700113K14Rik|4930549G18Rik	RIKEN cDNA 1700001O22 gene	protein-coding	0.085000	0.671642	
mm_73457.1	chr8	106555899	106556099	+	1	NA	NA	NA	-31144	NR_045470	68692	Mm.416843	NR_045470	ENSMUSG00000099139	1110028F18Rik	-	RIKEN cDNA 1110028F18 gene	ncRNA	0.010000	0.388060	
mm_83698.1	chr9	50659371	50659571	-	1	NA	NA	NA	309	NM_145614	235339	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	0.110000	0.716418	
mm_66196.1	chr7	34229326	34229526	-	1	NA	NA	NA	910	NM_008155	14751	Mm.589	NM_008155	ENSMUSG00000036427	Gpi1	Amf|Gpi|Gpi-1|Gpi-1r|Gpi-1s|Gpi-1t|Gpi1-r|Gpi1-s|Gpi1-t|Gpi1s|MF|NK|NK/GPI|Nlk|Org|Pgi|Phi	glucose phosphate isomerase 1	protein-coding	0.015000	0.537313	
mm_64862.1	chr7	13037866	13038066	-	1	NA	NA	NA	12	NM_145578	22192	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0.125000	0.751244	
mm_146173.1	chr18	75367289	75367489	+	1	NA	NA	NA	24	NM_001042660	17131	Mm.34407	NM_008543	ENSMUSG00000025880	Smad7	Madh7	SMAD family member 7	protein-coding	0.105000	0.741294	
mm_89449.1	chr10	93143744	93143944	+	1	NA	NA	NA	-17032	NM_146239	237459	Mm.217404	NM_146239	ENSMUSG00000020015	Cdk17	6430598J10Rik|Pctk2	cyclin-dependent kinase 17	protein-coding	0.025000	0.512438	-37(GGGTTTATAAGA,-,0.00)
mm_168568.1	chr11	69670541	69670741	-	1	NA	NA	NA	1782	NM_144958	13681	Mm.26680	NM_144958	ENSMUSG00000059796	Eif4a1	BM-010|Ddx2a|Eif4	eukaryotic translation initiation factor 4A1	protein-coding	0.020000	0.487562	
mm_55280.1	chr6	54337139	54337339	-	1	NA	NA	NA	10227	NM_030024	78004	Mm.41984	NM_030024	ENSMUSG00000045725	Prr15	E130201N16Rik|G90	proline rich 15	protein-coding	0.005000	0.388060	-35(GGCTATTTAAAA,-,0.00)
mm_90768.1	chr10	5805301	5805501	-	1	NA	NA	NA	64	NM_025995	67141	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	0.095000	0.616915	-34(CGCCTTTTAAGA,-,0.00),-33(GCCTTTTAAGAG,-,0.00),-32(CCTTTTAAGAGC,+,0.00),-31(CTTTTAAGAGCT,+,0.00)
mm_43949.1	chr5	145140290	145140490	+	1	NA	NA	NA	14	NM_001008705	231889	Mm.277413	NM_001008705	ENSMUSG00000038722	Bud31	C77604|EDG-2|EDG2|G10	BUD31 homolog	protein-coding	0.085000	0.572139	
mm_67443.1	chr7	80387844	80388044	-	1	NA	NA	NA	2	NM_010194	14159	Mm.48757	NM_010194	ENSMUSG00000053158	Fes	AI586313|BB137047|FPS|c-fes	feline sarcoma oncogene	protein-coding	0.045000	0.661692	
mm_20803.1	chr2	144270690	144270890	-	1	NA	NA	NA	112	NM_001199188	69178	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	0.165000	0.721393	
mm_75959.1	chr8	71717113	71717313	-	1	NA	NA	NA	8468	NR_131256	74015	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.040000	0.597015	
mm_129204.1	chr15	76512105	76512305	-	1	NA	NA	NA	-387	NM_010046	13350	Mm.22633	NM_010046	ENSMUSG00000022555	Dgat1	ARAT|C75990|D15Ertd23e|Dgat	diacylglycerol O-acyltransferase 1	protein-coding	0.035000	0.582090	
mm_47554.1	chr5	124373167	124373367	-	1	NA	NA	NA	-18639	NM_013812	13445	Mm.391838	NM_013812	ENSMUSG00000029394	Cdk2ap1	Apc10|Cdkap1|DORC1|Doc1|ST19|doc-1|p12	CDK2 (cyclin-dependent kinase 2)-associated protein 1	protein-coding	0.000000	0.288557	
mm_117758.1	chr13	96081190	96081390	-	1	NA	NA	NA	51287	NM_029210	75209	Mm.40436	NM_029210	ENSMUSG00000051111	Sv2c	4930527L09Rik|AI841971	synaptic vesicle glycoprotein 2c	protein-coding	0.015000	0.442786	
mm_138777.1	chr17	37246839	37247039	+	1	NA	NA	NA	-14571	NM_146512	258505	Mm.353371	NM_146512	ENSMUSG00000058802	Olfr97	MOR156-2	olfactory receptor 97	protein-coding	0.015000	0.492537	
mm_6440.1	chr1	73998335	73998535	-	1	NA	NA	NA	126012	NM_027884	21961	Mm.309975	NM_027884	ENSMUSG00000055322	Tns1	1110018I21Rik|1200014E20Rik|AI648117|E030018G17Rik|E030037J05Rik|Tns	tensin 1	protein-coding	0.015000	0.597015	
mm_102131.1	chr11	53430374	53430574	-	1	NA	NA	NA	357	NM_025352	22272	Mm.251621	NM_025352	ENSMUSG00000044894	Uqcrq	1100001F06Rik|1500040F11Rik|5830407L17Rik|9.5kDa|AA959903|QP-C|Qpc|Uqcrb|c1502	ubiquinol-cytochrome c reductase, complex III subunit VII	protein-coding	0.115000	0.651741	
mm_141579.1	chr17	32364359	32364559	-	1	NA	NA	NA	-13882	NM_017476	54194	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	0.160000	0.786070	
mm_121969.1	chr14	25587360	25587560	-	1	NA	NA	NA	656	NR_033492	77592	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0.015000	0.537313	
mm_93849.1	chr10	121826231	121826431	-	1	NA	NA	NA	86394	NM_173022	270802	Mm.209172	NM_173022	ENSMUSG00000053684	BC048403	E030027L10	cDNA sequence BC048403	protein-coding	0.010000	0.308458	61(AGTTTTATAAGG,-,0.00)
mm_137671.1	chr17	28769284	28769484	+	1	NA	NA	NA	67	NM_011950	26415	Mm.27970	NM_011950	ENSMUSG00000004864	Mapk13	SAPK4|Serk4	mitogen-activated protein kinase 13	protein-coding	0.100000	0.721393	
mm_78028.1	chr9	13766733	13766933	+	1	NA	NA	NA	17652	NR_024025	77116	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.020000	0.512438	
mm_104008.1	chr11	85094024	85094224	-	1	NA	NA	NA	45831	NM_001029934	237898	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0.005000	0.323383	
mm_91199.1	chr10	21160716	21160916	-	1	NA	NA	NA	168	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.105000	0.731343	
mm_46967.1	chr5	115156830	115157030	-	1	NA	NA	NA	1246	NM_175403	109154	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0.015000	0.427861	
mm_133395.1	chr16	84774292	84774492	+	1	NA	NA	NA	269	NM_023844	67374	Mm.41758	NM_023844	ENSMUSG00000053062	Jam2	1110002N23Rik|2410030G21Rik|2410167M24Rik|JAM-2|JAM-B|Jcam2|VE-JAM	junction adhesion molecule 2	protein-coding	0.080000	0.701493	
mm_168994.1	chr12	99645520	99645720	+	1	NA	NA	NA	-17646	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.065000	0.527363	44(CCCCAGAAAAGG,-,0.00)
mm_25416.1	chr3	107461047	107461247	+	1	NA	NA	NA	-2249	NM_145922	99738	Mm.101976	NM_145922	ENSMUSG00000027895	Kcnc4	AI850292|KSHIIIC|Kcr2-4|Kv3.4	potassium voltage gated channel, Shaw-related subfamily, member 4	protein-coding	0.000000	0.388060	
mm_15615.1	chr2	160880612	160880812	+	1	NA	NA	NA	42	NM_022883	64899	Mm.292111	NM_022883	ENSMUSG00000027412	Lpin3	9130206L11Rik|AA438110|AV236139|mKIAA4023	lipin 3	protein-coding	0.035000	0.527363	
mm_91185.1	chr10	21083467	21083667	-	1	NA	NA	NA	42747	NM_001177776	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.020000	0.452736	
mm_86484.1	chr10	4959489	4959689	+	1	NA	NA	NA	109474	NM_022027	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.000000	0.293532	
mm_39635.1	chr5	24473511	24473711	+	1	NA	NA	NA	21434	NM_139153	213990	Mm.250703	NM_139153	ENSMUSG00000023353	Agap3	AGAP-3|AV028425|Centg3|Crag|Crag.|MRIP-1|cnt-g3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	protein-coding	0.015000	0.462687	
mm_95117.1	chr11	34078029	34078229	+	1	NA	NA	NA	30928	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.005000	0.447761	
mm_143453.1	chr17	70974111	70974311	-	1	NA	NA	NA	16305	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.015000	0.482587	
mm_101556.1	chr11	33843603	33843803	-	1	NA	NA	NA	-118	NM_001290690	70357	Mm.252514	NM_027398	ENSMUSG00000053519	Kcnip1	KCHIP1|Kchip1.2	Kv channel-interacting protein 1	protein-coding	0.095000	0.751244	
mm_90899.1	chr10	10558061	10558261	-	1	NA	NA	NA	46	NM_026405	67844	Mm.31486	NM_026405	ENSMUSG00000019832	Rab32	2810011A17Rik|AU022057	RAB32, member RAS oncogene family	protein-coding	0.075000	0.661692	
mm_53503.1	chr6	135362854	135363054	+	1	NA	NA	NA	23	NM_001288628	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.020000	0.482587	-35(CTCCTTTAAAAC,-,0.00),-33(CCTTTAAAACAC,+,0.00)
mm_45554.1	chr5	73168315	73168515	-	1	NA	NA	NA	88203	NM_028194	72313	Mm.260594	NM_028194	ENSMUSG00000070733	Fryl	2010313D22Rik|2310004H21Rik|2510002A14Rik|9030227G01Rik|mKIAA0826	FRY like transcription coactivator	protein-coding	0.055000	0.621891	
mm_69890.1	chr7	141637149	141637349	-	1	NA	NA	NA	16548	NR_106030	102466798		NR_106030	ENSMUSG00000098759	Mir7063	Gm27654|mmu-mir-7063	microRNA 7063	ncRNA	0.010000	0.542289	
mm_9114.1	chr1	170174792	170174992	-	1	NA	NA	NA	72	NM_001305046	107652	Mm.27969	NM_133806	ENSMUSG00000026670	Uap1	AA420407|AA437972|AGX-1|AGX-2|AGX1|AgX|ESTM38|SPAG2	UDP-N-acetylglucosamine pyrophosphorylase 1	protein-coding	0.140000	0.776119	
mm_42080.1	chr5	110176559	110176759	+	1	NA	NA	NA	-42	NM_001347389	269682	Mm.9392	NM_008146	ENSMUSG00000029502	Golga3	5330413L04|5430416E01Rik|AI449376|AW490576|G1-499-14|Mea-2|Mea2|repro27	golgi autoantigen, golgin subfamily a, 3	protein-coding	0.050000	0.527363	
mm_144039.1	chr17	90178471	90178671	-	1	NA	NA	NA	-90203	NM_001347419	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.000000	0.298507	75(ACTTTTATAGTT,+,0.00)
mm_123856.1	chr14	70994392	70994592	-	1	NA	NA	NA	104385	NM_001302094	14586	Mm.32619	NM_008115	ENSMUSG00000022103	Gfra2	-	glial cell line derived neurotrophic factor family receptor alpha 2	protein-coding	0.030000	0.527363	
mm_129970.1	chr15	85790098	85790298	-	1	NA	NA	NA	21499	NM_001164626	72355	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	0.005000	0.338308	
mm_81333.1	chr9	108517065	108517265	+	1	NA	NA	NA	78	NM_175143	69232	Mm.335449	NM_175143	ENSMUSG00000006673	Qrich1	2610028H07Rik	glutamine-rich 1	protein-coding	0.115000	0.701493	
mm_33661.1	chr4	133132764	133132964	+	1	NA	NA	NA	2231	NM_153423	242687	Mm.23566	NM_153423	ENSMUSG00000028868	Wasf2	AW742646|D4Ertd13e|WAVE2	WAS protein family, member 2	protein-coding	0.000000	0.402985	
mm_97944.1	chr11	83663390	83663590	+	1	NA	NA	NA	906	NM_013652	20303	Mm.244263	NM_013652	ENSMUSG00000018930	Ccl4	AT744.1|Act-2|MIP-1B|Mip1b|Scya4	chemokine (C-C motif) ligand 4	protein-coding	0.005000	0.477612	
mm_160051.1	chr7	3336600	3336800	+	1	NA	NA	NA	115	NM_133189	81904	Mm.214994	NM_133189	ENSMUSG00000069806	Cacng7	-	calcium channel, voltage-dependent, gamma subunit 7	protein-coding	0.060000	0.646766	
mm_48841.1	chr5	149366982	149367182	-	1	NA	NA	NA	-44724	NM_027519	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.005000	0.482587	
mm_87711.1	chr10	60003288	60003488	+	1	NA	NA	NA	61	NM_001199187	69090	Mm.155839	NM_026937	ENSMUSG00000044475	Ascc1	1810015P09Rik|AI550520|ASC1p50|CGI-18	activating signal cointegrator 1 complex subunit 1	protein-coding	0.035000	0.497512	
mm_140877.1	chr17	23828692	23828892	-	1	NA	NA	NA	317	NM_026305	67673	Mm.153758	NM_026305	ENSMUSG00000055839	Elob	0610040H15Rik|Tceb2	elongin B	protein-coding	0.105000	0.671642	
mm_59768.1	chr7	28833944	28834144	+	1	NA	NA	NA	-126	NM_010707	16857	Mm.210336	NM_010707		Lgals6	galectin-6	lectin, galactose binding, soluble 6	protein-coding	0.000000	0.557214	-51(GGCCCTAAGAGG,-,0.00)
mm_111425.1	chr12	91635815	91636015	-	1	NA	NA	NA	-45428	NM_175335	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.015000	0.522388	
mm_16304.1	chr2	174289583	174289783	+	1	NA	NA	NA	5363	NM_022000	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.020000	0.472637	
mm_147667.1	chr18	60621898	60622098	-	1	NA	NA	NA	2307	NM_177340	104027	Mm.252321	NM_177340	ENSMUSG00000043079	Synpo	9030217H17Rik|9130229N11|9330140I15Rik|AW046661	synaptopodin	protein-coding	0.005000	0.552239	
mm_133191.1	chr16	72669410	72669610	+	1	NA	NA	NA	6361	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.010000	0.358209	39(GCTTTAATGCAG,+,0.00)
mm_26328.1	chr3	142543784	142543984	+	1	NA	NA	NA	13548	NM_145545	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.010000	0.437811	
mm_32316.1	chr4	103563227	103563427	+	1	NA	NA	NA	180827	NR_040673	622167	Mm.244115	NR_040673	ENSMUSG00000086136	Gm12718	OTTMUSG00000008109	predicted gene 12718	ncRNA	0.080000	0.522388	
mm_121184.1	chr14	103049256	103049456	+	1	NA	NA	NA	2344	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.015000	0.462687	
mm_153765.1	chr19	45591825	45592025	-	1	NA	NA	NA	31310	NM_172639	226162	Mm.21978	NM_172639	ENSMUSG00000041035	Dpcd	5330431N19Rik|Ndac	deleted in primary ciliary dyskinesia	protein-coding	0.015000	0.502488	
mm_136571.1	chr17	3453137	3453337	+	1	NA	NA	NA	-29078	NM_001286758	24001	Mm.137134	NM_011878	ENSMUSG00000023800	Tiam2	3000002F19Rik|STEF|mKIAA2016	T cell lymphoma invasion and metastasis 2	protein-coding	0.025000	0.457711	
mm_144047.1	chr17	90444999	90445199	-	1	NA	NA	NA	10781	NM_001346958	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.000000	0.378109	
mm_99359.1	chr11	101627858	101628058	+	1	NA	NA	NA	9	NM_025654	66599	Mm.41449	NM_025654	ENSMUSG00000010362	Rdm1	2410008M22Rik|AW212028|Rad52b	RAD52 motif 1	protein-coding	0.050000	0.497512	
mm_38342.1	chr4	137766388	137766588	-	1	NA	NA	NA	-13	NM_001287172	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.015000	0.582090	
mm_11622.1	chr2	34774098	34774298	+	1	NA	NA	NA	2108	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.025000	0.477612	
mm_19602.1	chr2	102401084	102401284	-	1	NA	NA	NA	-284	NM_020267	80985	Mm.315002	NM_020267	ENSMUSG00000027189	Trim44	Dipb|Mc7	tripartite motif-containing 44	protein-coding	0.075000	0.631841	
mm_19604.1	chr2	102451706	102451906	-	1	NA	NA	NA	-14	NM_010218	14221	Mm.29730	NM_010218	ENSMUSG00000075012	Fjx1	-	four jointed box 1 (Drosophila)	protein-coding	0.110000	0.736318	
mm_85910.1	chr9	111057112	111057312	-	1	NA	NA	NA	32	NM_001302377	54199	Mm.7336	NM_017466	ENSMUSG00000043953	Ccrl2	1810047I05Rik|Ackr5|CCR11|Cmkbr1l2|E01|L-CCR	chemokine (C-C motif) receptor-like 2	protein-coding	0.030000	0.537313	
mm_82008.1	chr9	121710306	121710506	+	1	NA	NA	NA	17	NM_026794	26901	Mm.24848	NM_026794	ENSMUSG00000032526	Ss18l2	1110020I04Rik|AI463209|Deb1	SS18, nBAF chromatin remodeling complex subunit like 2	protein-coding	0.090000	0.601990	
mm_53539.1	chr6	136808125	136808325	+	1	NA	NA	NA	-23	NM_177688	232440	Mm.154564	NM_177688	ENSMUSG00000060032	H2afj	E130307C13	H2A histone family, member J	protein-coding	0.080000	0.592040	
mm_3447.1	chr1	150102766	150102966	+	1	NA	NA	NA	2835	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.000000	0.338308	
mm_27920.1	chr3	79531974	79532174	-	1	NA	NA	NA	35605	NM_001162999	329679	Mm.244005	NM_001162999	ENSMUSG00000061175	Fnip2	D630023B12Rik|mKIAA1450	folliculin interacting protein 2	protein-coding	0.015000	0.507463	
mm_62576.1	chr7	104332034	104332234	+	1	NA	NA	NA	2663	NM_001243916	434218	Mm.485757	NM_001243916	ENSMUSG00000090215	Trim34b	Gm15134|OTTMUSG00000019188|Trim34-2	tripartite motif-containing 34B	protein-coding	0.000000	0.363184	
mm_173110.1	chrX	158600706	158600906	+	1	NA	NA	NA	-557609	NM_177751	245684	Mm.197074	NM_177751	ENSMUSG00000025658	Cnksr2	Cnk2|Ksr2	connector enhancer of kinase suppressor of Ras 2	protein-coding	0.045000	0.437811	-21(TGGTATATAAAG,-,0.00)
mm_142990.1	chr17	56290379	56290579	-	1	NA	NA	NA	32	NM_025836	66905	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	0.045000	0.636816	
mm_127968.1	chr15	12010706	12010906	-	1	NA	NA	NA	-14799	NM_011294	20024	Mm.41746	NM_011294	ENSMUSG00000022205	Sub1	AI842364|P15|P9|Pc4|Rpo2tc1	SUB1 homolog (S. cerevisiae)	protein-coding	0.050000	0.532338	
mm_85062.1	chr9	90250446	90250646	-	1	NA	NA	NA	20223	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.015000	0.497512	
mm_167371.1	chr8	89580108	89580308	+	1	NA	NA	NA	-536046	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	sal-like 1 (Drosophila)	protein-coding	0.015000	0.447761	
mm_31164.1	chr4	43443016	43443216	+	1	NA	NA	NA	839	NM_011571	21754	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.155000	0.840796	
mm_78505.1	chr9	32747835	32748035	+	1	NA	NA	NA	51893	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.020000	0.517413	
mm_147034.1	chr18	34751422	34751622	-	1	NA	NA	NA	11	NM_009860	12532	Mm.286602	NM_009860	ENSMUSG00000044201	Cdc25c	Cdc25	cell division cycle 25C	protein-coding	0.035000	0.512438	
mm_156691.1	chrX	159459049	159459249	+	1	NA	NA	NA	24	NM_001313753	78283	Mm.160079	NM_001081124	ENSMUSG00000041020	Map7d2	1600028E09Rik|2900002G04Rik|5330432J06Rik|C030036K04Rik|Mtap7d2	MAP7 domain containing 2	protein-coding	0.000000	0.527363	
mm_86317.1	chr9	122903032	122903232	-	1	NA	NA	NA	14661	NM_001177505	382118	Mm.86999	NM_001177505	ENSMUSG00000063488	Zkscan7	BC042569|Zfp167	zinc finger with KRAB and SCAN domains 7	protein-coding	0.030000	0.582090	
mm_21114.1	chr2	153492392	153492592	-	1	NA	NA	NA	37479	NM_001134300	329540	Mm.50600	NM_001001986	ENSMUSG00000061411	Nol4l	4931410H15|8430427H17Rik|AI429157|Gm1636	nucleolar protein 4-like	protein-coding	0.110000	0.781095	
mm_123155.1	chr14	57131937	57132137	-	1	NA	NA	NA	1574	NM_001271663	14623	Mm.25652	NM_008128	ENSMUSG00000040055	Gjb6	AA958971|Cx30|D14Bwg0506e	gap junction protein, beta 6	protein-coding	0.010000	0.502488	
mm_104410.1	chr11	94601768	94601968	-	1	NA	NA	NA	-82	NM_153807	264895	Mm.386885	NM_153807	ENSMUSG00000076435	Acsf2	-	acyl-CoA synthetase family member 2	protein-coding	0.110000	0.696517	
mm_91979.1	chr10	61680153	61680353	-	1	NA	NA	NA	37	NR_126477	75539		NR_126477		1700022H01Rik	-	RIKEN cDNA 1700022H01 gene	ncRNA	0.130000	0.721393	
mm_10331.1	chr2	11521986	11522186	+	1	NA	NA	NA	-19996	NM_001177757	170768	Mm.19669	NM_133232	ENSMUSG00000026773	Pfkfb3	E330010H22Rik|iPFK-2|uPFK-2	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3	protein-coding	0.020000	0.537313	58(GCCTTTATAAAG,-,0.00),60(CTTTATAAAGAA,+,0.00)
mm_103514.1	chr11	76734639	76734839	-	1	NA	NA	NA	28816	NM_016810	53334	Mm.20931	NM_016810	ENSMUSG00000010392	Gosr1	AI414660|AI426320|BB145494|GOS-28|GOSRI|GS28	golgi SNAP receptor complex member 1	protein-coding	0.005000	0.442786	12(GTCTTTAGAGGG,+,0.00)
mm_24637.1	chr3	94372742	94372942	+	1	NA	NA	NA	48	NM_011281	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.020000	0.676617	
mm_27397.1	chr3	51211465	51211665	-	1	NA	NA	NA	-12882	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.000000	0.472637	
mm_65760.1	chr7	28630809	28631009	-	1	NA	NA	NA	106	NM_175319	101744	Mm.26022	NM_175319	ENSMUSG00000037469	Acp7	AU017076|C330005M16Rik|Papl	acid phosphatase 7, tartrate resistant	protein-coding	0.030000	0.606965	
mm_84532.1	chr9	67155125	67155325	-	1	NA	NA	NA	21664	NR_045748	100502636	Mm.412607	NR_045748	ENSMUSG00000111556	Gm19299	-	predicted gene, 19299	ncRNA	0.015000	0.388060	
mm_86060.1	chr9	114639983	114640183	-	1	NA	NA	NA	117	NM_153585	78893	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	0.095000	0.661692	
mm_43420.1	chr5	136038687	136038887	+	1	NA	NA	NA	291	NM_175309	100647	Mm.3089	NM_175309	ENSMUSG00000042985	Upk3b	AI447729|AI957187|P35|PMS2L14|UpIIIb	uroplakin 3B	protein-coding	0.035000	0.636816	
mm_114781.1	chr13	88823493	88823693	+	1	NA	NA	NA	2121	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.015000	0.427861	
mm_94010.1	chr10	127621037	127621237	-	1	NA	NA	NA	11	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.040000	0.711443	
mm_138662.1	chr17	35869592	35869792	+	1	NA	NA	NA	3077	NM_175242	76448	Mm.359982	NM_175242	ENSMUSG00000034595	Ppp1r18	2310014H01Rik|AA407849|AI450394	protein phosphatase 1, regulatory subunit 18	protein-coding	0.020000	0.572139	
mm_122655.1	chr14	51911244	51911444	-	1	NA	NA	NA	2144	NM_001145959	29811	Mm.26722	NM_013864	ENSMUSG00000004558	Ndrg2	AI182517|AU040374|Ndr2|SYLD	N-myc downstream regulated gene 2	protein-coding	0.035000	0.592040	
mm_95989.1	chr11	59002863	59003063	+	1	NA	NA	NA	24870	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.010000	0.562189	
mm_38824.1	chr4	148952798	148952998	-	1	NA	NA	NA	146914	NM_019781	56273	Mm.184172	NM_019781	ENSMUSG00000028975	Pex14	Pex14p|R75137	peroxisomal biogenesis factor 14	protein-coding	0.060000	0.686567	
mm_72378.1	chr8	81353067	81353267	+	1	NA	NA	NA	10605	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.005000	0.313433	
mm_10367.1	chr2	11711941	11712141	+	1	NA	NA	NA	6329	NM_001271500	16169	Mm.200196	NM_008358	ENSMUSG00000023206	Il15ra	AA690181|IL-15RA	interleukin 15 receptor, alpha chain	protein-coding	0.005000	0.502488	-81(GCTTTAATACAG,+,0.00)
mm_113377.1	chr13	33004530	33004730	+	1	NA	NA	NA	89	NM_009256	20723	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0.035000	0.611940	
mm_23122.1	chr3	37644038	37644238	+	1	NA	NA	NA	4191	NM_001305442	24063	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty homolog 1 (Drosophila)	protein-coding	0.020000	0.522388	
mm_25707.1	chr3	122510780	122510980	+	1	NA	NA	NA	30801	NR_106117	102465764		NR_106117	ENSMUSG00000104773	Mir7657	mmu-mir-7657	microRNA 7657	ncRNA	0.010000	0.393035	
mm_23500.1	chr3	60527999	60528199	+	1	NA	NA	NA	26920	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.020000	0.472637	
mm_111281.1	chr12	85350528	85350728	-	1	NA	NA	NA	-11266	NM_145138	217718	Mm.29071	NM_145138	ENSMUSG00000034290	Nek9	C130021H08Rik	NIMA (never in mitosis gene a)-related expressed kinase 9	protein-coding	0.005000	0.442786	
mm_53454.1	chr6	134695921	134696121	+	1	NA	NA	NA	55081	NM_026371	67774	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	0.005000	0.343284	
mm_113176.1	chr13	24831574	24831774	+	1	NA	NA	NA	15	NM_019551	56196	Mm.427162	NM_019551	ENSMUSG00000035958	Tdp2	D13Ertd656e|Ttrap	tyrosyl-DNA phosphodiesterase 2	protein-coding	0.150000	0.706468	
mm_128819.1	chr15	67128763	67128963	-	1	NA	NA	NA	48019	NM_009177	20442	Mm.248334	NM_009177	ENSMUSG00000013846	St3gal1	5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	protein-coding	0.010000	0.542289	
mm_172885.1	chr9	52610703	52610903	+	1	NA	NA	NA	68634	NM_178906	330941	Mm.335160	NM_177907	ENSMUSG00000078307	AI593442	E130102D23	expressed sequence AI593442	protein-coding	0.045000	0.512438	
mm_11168.1	chr2	28557937	28558137	+	1	NA	NA	NA	5366	NM_009885	12613	Mm.236017	NM_009885	ENSMUSG00000026818	Cel	1810036E18Rik|BAL	carboxyl ester lipase	protein-coding	0.030000	0.517413	
mm_72802.1	chr8	87472689	87472889	+	1	NA	NA	NA	-23	NR_033430	100040294	Mm.213632	NR_033430	ENSMUSG00000097248	Gm2694	C230036H16Rik|linc1582	predicted gene 2694	ncRNA	0.150000	0.751244	
mm_84594.1	chr9	70036730	70036930	-	1	NA	NA	NA	1258	NM_028087	72077	Mm.195555	NM_028087	ENSMUSG00000032226	Gcnt3	2010013H22Rik|2210021I22Rik|2210401J11Rik	glucosaminyl (N-acetyl) transferase 3, mucin type	protein-coding	0.005000	0.497512	
mm_167234.1	chr8	14596529	14596729	-	1	NA	NA	NA	-291907	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.005000	0.467662	
mm_32344.1	chr4	104773911	104774111	+	1	NA	NA	NA	7694	NM_001316671	110382	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding	0.005000	0.437811	
mm_41954.1	chr5	105793534	105793734	+	1	NA	NA	NA	-82934	NR_030777	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.010000	0.487562	
mm_158215.1	chrX	105875933	105876133	-	1	NA	NA	NA	53339	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.005000	0.407960	-25(CCTCAAAGAGGC,+,0.00)
mm_140380.1	chr17	87107553	87107753	+	1	NA	NA	NA	-26	NM_019654	56468	Mm.126885	NM_019654	ENSMUSG00000037104	Socs5	1810018L08Rik|Cish5|mKIAA0671	suppressor of cytokine signaling 5	protein-coding	0.135000	0.815920	
mm_119603.1	chr14	51091025	51091225	+	1	NA	NA	NA	48	NM_021472	58809	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	0.050000	0.582090	
mm_54579.1	chr6	38124369	38124569	-	1	NA	NA	NA	117	NM_080467	140494	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	0.015000	0.507463	
mm_5479.1	chr1	36699821	36700021	-	1	NA	NA	NA	8434	NM_009942	12859	Mm.180182	NM_009942	ENSMUSG00000061518	Cox5b	-	cytochrome c oxidase subunit Vb	protein-coding	0.015000	0.577114	
mm_168488.1	chr1	149513115	149513315	-	1	NA	NA	NA	409224	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.030000	0.477612	
mm_75847.1	chr8	70638774	70638974	-	1	NA	NA	NA	-6418	NM_001330687	23886	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	0.025000	0.567164	
mm_98883.1	chr11	97815560	97815760	+	1	NA	NA	NA	15988	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.030000	0.582090	
mm_37501.1	chr4	123718088	123718288	-	1	NA	NA	NA	-2	NM_001030274	595136	Mm.42805	NM_001030274	ENSMUSG00000028648	Ndufs5	AI256693	NADH dehydrogenase (ubiquinone) Fe-S protein 5	protein-coding	0.105000	0.656716	
mm_148205.1	chr18	79110329	79110529	-	1	NA	NA	NA	-1038	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.090000	0.646766	
mm_140053.1	chr17	74549491	74549691	+	1	NA	NA	NA	21296	NM_007566	12211	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.000000	0.452736	
mm_66935.1	chr7	61595739	61595939	-	1	NA	NA	NA	19488	NR_045727	319752	Mm.294476	NR_045727		B230209E15Rik	-	RIKEN cDNA B230209E15 gene	ncRNA	0.005000	0.308458	
mm_173223.1	chrX	75104259	75104459	+	1	NA	NA	NA	8505	NM_001030307	245474	Mm.291062	NM_001030307	ENSMUSG00000031403	Dkc1	BC068171	dyskeratosis congenita 1, dyskerin	protein-coding	0.005000	0.462687	
mm_163182.1	chr11	91577488	91577688	-	1	NA	NA	NA	-33	NM_028547	73470	Mm.67677	NM_028547	ENSMUSG00000046755	Kif2b	1700063D03Rik	kinesin family member 2B	protein-coding	0.025000	0.537313	
mm_24915.1	chr3	96263624	96263824	+	1	NA	NA	NA	-407	NM_033596	97122	Mm.227295	NM_033596	ENSMUSG00000091405	Hist2h4	H4|X04652	histone cluster 2, H4	protein-coding	0.060000	0.532338	
mm_146770.1	chr18	20002250	20002450	-	1	NA	NA	NA	-253	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding	0.045000	0.572139	
mm_147132.1	chr18	36197222	36197422	-	1	NA	NA	NA	-162	NM_001167891	100042150	Mm.380390	NM_001167891	ENSMUSG00000060275	Nrg2	Don1|NTAK	neuregulin 2	protein-coding	0.095000	0.706468	
mm_120254.1	chr14	63011635	63011835	+	1	NA	NA	NA	-36	NM_001039121	654458	Mm.390737	NM_001039121	ENSMUSG00000075572	Defb43	BD-43|EG654458|mBD-43	defensin beta 43	protein-coding	0.015000	0.527363	
mm_3632.1	chr1	152807788	152807988	+	1	NA	NA	NA	7735	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.045000	0.567164	
mm_52320.1	chr6	108836265	108836465	+	1	NA	NA	NA	7724	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.020000	0.482587	
mm_130168.1	chr15	93270505	93270705	-	1	NA	NA	NA	4479	NM_001033275	223827	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.020000	0.542289	
mm_99128.1	chr11	100319747	100319947	+	1	NA	NA	NA	-102	NM_011508	20918	Mm.13886	NM_011508	ENSMUSG00000035530	Eif1	Sui1-rs1	eukaryotic translation initiation factor 1	protein-coding	0.095000	0.676617	
mm_70425.1	chr8	11477837	11478037	+	1	NA	NA	NA	8	NR_126558	102132	Mm.37632	NR_126558	ENSMUSG00000096957	E230013L22Rik	AI645545	RIKEN cDNA E230013L22 gene	ncRNA	0.055000	0.527363	
mm_85405.1	chr9	103365559	103365759	-	1	NA	NA	NA	121	NM_175833	321022	Mm.261025	NM_175565	ENSMUSG00000032803	Cdv3	2510010F10Rik|C230084J24Rik|C79446|TPP36	carnitine deficiency-associated gene expressed in ventricle 3	protein-coding	0.140000	0.771144	
mm_64849.1	chr7	13033928	13034128	-	1	NA	NA	NA	749	NM_026885	68953	Mm.295670	NM_026885	ENSMUSG00000033916	Chmp2a	1500016L11Rik	charged multivesicular body protein 2A	protein-coding	0.030000	0.542289	
mm_10704.1	chr2	22773962	22774162	+	1	NA	NA	NA	-265	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.005000	0.482587	
mm_149606.1	chr19	16383523	16383723	+	1	NA	NA	NA	-52044	NM_008137	14675	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.005000	0.358209	41(CAGTATAAAAGC,-,0.00)
mm_166224.1	chr5	65019075	65019275	-	1	NA	NA	NA	48857	NR_030577	100124451		NR_030577	ENSMUSG00000077042	Mir574	Mirn574|mir-574|mmu-mir-574	microRNA 574	ncRNA	0.005000	0.507463	-58(CATTTTAAAGAC,+,0.00)
mm_66489.1	chr7	45052790	45052990	-	1	NA	NA	NA	-9	NM_175022	233210	Mm.219137	NM_175022	ENSMUSG00000046574	Prr12	6720469B10|BC058674	proline rich 12	protein-coding	0.100000	0.671642	
mm_44963.1	chr5	36713176	36713376	-	1	NA	NA	NA	-17255	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.030000	0.611940	
mm_76032.1	chr8	77289867	77290067	-	1	NA	NA	NA	-227089	NR_028125	70345	Mm.411813	NR_028125	ENSMUSG00000097882	0610038B21Rik	-	RIKEN cDNA 0610038B21 gene	ncRNA	0.025000	0.487562	9(CCTTTTCAGGCC,+,0.00)
mm_143998.1	chr17	88051639	88051839	-	1	NA	NA	NA	13546	NM_001081034	225055	Mm.386857	NM_001081034	ENSMUSG00000005371	Fbxo11	C80048|Jf	F-box protein 11	protein-coding	0.015000	0.452736	
mm_164548.1	chr17	12549985	12550185	+	1	NA	NA	NA	-34104	NM_013667	20518	Mm.17322	NM_013667	ENSMUSG00000040966	Slc22a2	Oct2|Orct2	solute carrier family 22 (organic cation transporter), member 2	protein-coding	0.010000	0.482587	-34(GGTTATATAAGG,-,0.00)
mm_50892.1	chr6	56832069	56832269	+	1	NA	NA	NA	110	NM_012056	27055	Mm.20943	NM_012056	ENSMUSG00000029781	Fkbp9	1810014L23|AW549641|FKBP-63|FKBP-9|FKBP60|FKBP63|FKBP65RS	FK506 binding protein 9	protein-coding	0.145000	0.791045	
mm_169571.1	chr15	19863952	19864152	-	1	NA	NA	NA	802698	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.005000	0.447761	
mm_36093.1	chr4	58499293	58499493	-	1	NA	NA	NA	10	NM_001290486	14745	Mm.4772	NM_010336	ENSMUSG00000038668	Lpar1	AI326300|Edg2|Gpcr26|Kdt2|lpA1|vzg-1	lysophosphatidic acid receptor 1	protein-coding	0.015000	0.502488	
mm_88151.1	chr10	69534029	69534229	+	1	NA	NA	NA	421	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.030000	0.567164	-17(CCCTAAATGGAC,+,0.00)
mm_66704.1	chr7	45921019	45921219	-	1	NA	NA	NA	-270	NM_001146346	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.010000	0.527363	
mm_121586.1	chr14	6889840	6890040	-	1	NA	NA	NA	-132883	NM_001309401	100041151	Mm.396155	NM_001309401	ENSMUSG00000091754	Gm3636	100042043	predicted gene 3636	protein-coding	0.115000	0.736318	
mm_123676.1	chr14	69484009	69484209	-	1	NA	NA	NA	28440	NM_173420	239167	Mm.259889	NM_173420	ENSMUSG00000047977	Synb	D930020E02Rik|syncytin-B	syncytin b	protein-coding	0.000000	0.368159	22(CCTTTTAAACCT,+,0.00)
mm_135391.1	chr16	44332865	44333065	-	1	NA	NA	NA	-127	NM_001159419	320007	Mm.242144	NM_198034	ENSMUSG00000022696	Sidt1	AW045928|B830021E24Rik	SID1 transmembrane family, member 1	protein-coding	0.035000	0.492537	
mm_157191.1	chrX	12058659	12058859	-	1	NA	NA	NA	21794	NM_175045	71458	Mm.196328	NM_029510	ENSMUSG00000040363	Bcor	2900008C10Rik|5830466J11Rik|8430401K06Rik|BcorR|D930024N20Rik|mKIAA1575	BCL6 interacting corepressor	protein-coding	0.020000	0.542289	
mm_121293.1	chr14	105258770	105258970	+	1	NA	NA	NA	197	NM_001190989	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.155000	0.756219	
mm_59845.1	chr7	29768505	29768705	+	1	NA	NA	NA	53	NM_023750	74352	Mm.251083	NM_023750	ENSMUSG00000046185	Zfp84	2210410P13Rik|4633401C23Rik|AI415447|BB081605|C86188|KRAB18|Zfp69	zinc finger protein 84	protein-coding	0.060000	0.522388	-63(CACTATAAATGC,-,0.00)
mm_123589.1	chr14	67072597	67072797	-	1	NA	NA	NA	-226	NM_001205188	71978	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0.025000	0.577114	
mm_12900.1	chr2	84809215	84809415	+	1	NA	NA	NA	10487	NM_019949	56791	Mm.38261	NM_019949	ENSMUSG00000027078	Ube2l6	2810489I21Rik|RIG-B|UBCH8|Ubce8|Ubcm8	ubiquitin-conjugating enzyme E2L 6	protein-coding	0.000000	0.507463	
mm_157.1	chr1	12692414	12692614	+	1	NA	NA	NA	84	NM_001198566	240725	Mm.45563	NM_172294	ENSMUSG00000016918	Sulf1	AI467640|AW121680|mKIAA1077	sulfatase 1	protein-coding	0.015000	0.522388	
mm_45958.1	chr5	90463973	90464173	-	1	NA	NA	NA	3203	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.015000	0.472637	
mm_34003.1	chr4	137920780	137920980	+	1	NA	NA	NA	58643	NM_199307	230857	Mm.401062	NM_199307	ENSMUSG00000057530	Ece1	AW322500|ECE-1|ECE-1a|ECE-1b|ECE-1d	endothelin converting enzyme 1	protein-coding	0.025000	0.606965	
mm_105829.1	chr11	113197388	113197588	-	1	NA	NA	NA	4350	NR_015556	72386	Mm.266961	NR_015556	ENSMUSG00000087259	2610035D17Rik	-	RIKEN cDNA 2610035D17 gene	ncRNA	0.035000	0.402985	
mm_99970.1	chr11	113687665	113687865	+	1	NA	NA	NA	3353	NM_177777	276852	Mm.239566	NM_177777	ENSMUSG00000041623	D11Wsu47e	-	DNA segment, Chr 11, Wayne State University 47, expressed	protein-coding	0.035000	0.492537	
mm_165035.1	chr19	36118141	36118341	+	1	NA	NA	NA	1603	NM_013468	107765	Mm.10279	NM_013468	ENSMUSG00000024803	Ankrd1	Alrp|CARP|Crap|MARP1	ankyrin repeat domain 1 (cardiac muscle)	protein-coding	0.010000	0.402985	
mm_171192.1	chr3	44857423	44857623	+	1	NA	NA	NA	520737	NR_045172	72511	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.025000	0.487562	-25(GTTTTTAAAAAG,-,0.00)
mm_77867.1	chr9	5335316	5335516	+	1	NA	NA	NA	-10060	NM_009808	12364	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0.000000	0.373134	
mm_140396.1	chr17	87635882	87636082	+	1	NA	NA	NA	3	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.040000	0.597015	
mm_68778.1	chr7	122132803	122133003	-	1	NA	NA	NA	43	NM_001289844	233826	Mm.38348	NM_172744	ENSMUSG00000044702	Palb2	BC066140	partner and localizer of BRCA2	protein-coding	0.075000	0.646766	
mm_141395.1	chr17	29237977	29238177	-	1	NA	NA	NA	-287	NM_153166	240058	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	0.135000	0.781095	
mm_163047.1	chr11	57513757	57513957	-	1	NA	NA	NA	4787	NM_001168667	67726	Mm.25632	NM_026342	ENSMUSG00000020523	Fam114a2	1810073G14Rik|9030624B09Rik	family with sequence similarity 114, member A2	protein-coding	0.010000	0.407960	-57(GTATTTATACGC,+,0.00),43(CCTTATCTGGGC,+,0.00)
mm_38475.1	chr4	140665802	140666002	-	1	NA	NA	NA	3	NM_001112722	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.040000	0.646766	
mm_99582.1	chr11	104231476	104231676	+	1	NA	NA	NA	140	NM_001285454	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.080000	0.676617	
mm_166981.1	chr7	45434342	45434542	-	1	NA	NA	NA	22	NM_011304	20174	Mm.34410	NM_011304	ENSMUSG00000003868	Ruvbl2	mp47|p47	RuvB-like protein 2	protein-coding	0.050000	0.577114	
mm_132375.1	chr16	34900140	34900340	+	1	NA	NA	NA	39089	NR_040536	76649	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.015000	0.542289	
mm_56331.1	chr6	92578401	92578601	-	1	NA	NA	NA	-11135	NM_001134461	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.000000	0.368159	
mm_17002.1	chr2	18392687	18392887	-	1	NA	NA	NA	43	NM_001190817	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.080000	0.696517	
mm_82452.1	chr9	15494082	15494282	-	1	NA	NA	NA	-11313	NM_133214	170748	Mm.86572	NM_133214	ENSMUSG00000058173	Smco4	Fn5	single-pass membrane protein with coiled-coil domains 4	protein-coding	0.065000	0.626866	
mm_65724.1	chr7	28380852	28381052	-	1	NA	NA	NA	-1724	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.025000	0.482587	
mm_138679.1	chr17	35916795	35916995	+	1	NA	NA	NA	-301	NM_001163818	52040	Mm.29385	NM_175934	ENSMUSG00000039220	Ppp1r10	2610025H06Rik|Cat53|D17Ertd808e|Fb19|Pnuts	protein phosphatase 1, regulatory subunit 10	protein-coding	0.120000	0.681592	56(GGGTATAAAAGA,-,0.00)
mm_77674.1	chr8	124945639	124945839	-	1	NA	NA	NA	3515	NM_053207	112405	Mm.140619	NM_053207	ENSMUSG00000031987	Egln1	AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20	egl-9 family hypoxia-inducible factor 1	protein-coding	0.005000	0.487562	-92(CCATTTAGGCAC,+,0.00)
mm_109005.1	chr12	103314884	103315084	+	1	NA	NA	NA	25	NM_001195726	100504156	Mm.425749	NM_001195726	ENSMUSG00000096753	Fam181a	EG544888	family with sequence similarity 181, member A	protein-coding	0.060000	0.666667	
mm_142813.1	chr17	51737753	51737953	-	1	NA	NA	NA	74201	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.010000	0.497512	-36(TGGTCTAAATGG,-,0.00)
mm_23266.1	chr3	51484122	51484322	+	1	NA	NA	NA	256	NM_016858	19338	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.140000	0.746269	
mm_115026.1	chr13	99184606	99184806	+	1	NA	NA	NA	-117	NM_001004149	238803	Mm.343207	NM_001004149	ENSMUSG00000050919	Zfp366	DC-SCRIPT|Znf366	zinc finger protein 366	protein-coding	0.030000	0.492537	
mm_4706.1	chr1	180904211	180904411	+	1	NA	NA	NA	37	NM_133705	69051	Mm.274180	NM_133705	ENSMUSG00000026520	Pycr2	1810018M05Rik|P5cr2	pyrroline-5-carboxylate reductase family, member 2	protein-coding	0.080000	0.601990	
mm_168798.1	chr12	20071483	20071683	+	1	NA	NA	NA	744196	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.130000	0.761194	
mm_23908.1	chr3	83042332	83042532	+	1	NA	NA	NA	7431	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.010000	0.452736	
mm_61014.1	chr7	49372105	49372305	+	1	NA	NA	NA	126016	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.015000	0.507463	
mm_12129.1	chr2	61649879	61650079	+	1	NA	NA	NA	56882	NM_001164071	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.015000	0.422886	
mm_95564.1	chr11	52360998	52361198	+	1	NA	NA	NA	236	NM_011694	22333	Mm.3555	NM_011694	ENSMUSG00000020402	Vdac1	AL033343|Vdac5|mVDAC1|mVDAC5	voltage-dependent anion channel 1	protein-coding	0.145000	0.771144	
mm_49856.1	chr6	38441856	38442056	+	1	NA	NA	NA	8031	NM_177185	320538	Mm.302831	NM_177185	ENSMUSG00000038538	Ubn2	2900060J04Rik|6030408G03Rik|BC060116|D130059P03Rik|mKIAA2030	ubinuclein 2	protein-coding	0.005000	0.393035	
mm_79956.1	chr9	66126715	66126915	+	1	NA	NA	NA	204	NM_026635	68250	Mm.27107	NM_026635	ENSMUSG00000032381	Fam96a	5730536A07Rik	family with sequence similarity 96, member A	protein-coding	0.050000	0.557214	
mm_22706.1	chr3	19187209	19187409	+	1	NA	NA	NA	-20	NM_001253390	67472	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.020000	0.457711	
mm_7645.1	chr1	128280918	128281118	-	1	NA	NA	NA	36837	NM_026390	67812	Mm.293321	NM_026390	ENSMUSG00000026353	Ubxn4	1300013G12Rik|Ubxd2|mKIAA0242	UBX domain protein 4	protein-coding	0.005000	0.383085	
mm_127973.1	chr15	12137830	12138030	-	1	NA	NA	NA	20079	NM_011767	22763	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.005000	0.432836	
mm_6669.1	chr1	80340290	80340490	-	1	NA	NA	NA	300	NM_001313728	26554	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.165000	0.820896	
mm_21485.1	chr2	163087675	163087875	-	1	NA	NA	NA	1826	NM_026630	68236	Mm.33648	NM_026630	ENSMUSG00000070708	Gtsf1l	2410116G06Rik	gametocyte specific factor 1-like	protein-coding	0.025000	0.477612	
mm_82189.1	chr9	123938171	123938371	+	1	NA	NA	NA	30421	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.005000	0.412935	-33(GTTTCTTAAAGG,-,0.00)
mm_123294.1	chr14	61556786	61556986	-	1	NA	NA	NA	0	NM_025697	66674	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0.060000	0.681592	
mm_171867.1	chr5	24581782	24581982	-	1	NA	NA	NA	-4415	NM_001190443	27407	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	0.060000	0.472637	
mm_31251.1	chr4	44981382	44981582	+	1	NA	NA	NA	88	NM_001312880	76238	Mm.196574	NM_080289	ENSMUSG00000035637	Grhpr	1110059D05Rik|6430629L09Rik|Glxr	glyoxylate reductase/hydroxypyruvate reductase	protein-coding	0.110000	0.696517	
mm_115793.1	chr13	19338688	19338888	-	1	NA	NA	NA	57025	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.398010	
mm_73553.1	chr8	108958781	108958981	+	1	NA	NA	NA	22021	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.010000	0.303483	
mm_142343.1	chr17	43592336	43592536	-	1	NA	NA	NA	-927	NR_045444	73504	Mm.9277	NR_045444	ENSMUSG00000090307	1700071M16Rik	-	RIKEN cDNA 1700071M16 gene	ncRNA	0.020000	0.492537	
mm_70369.1	chr8	9977618	9977818	+	1	NA	NA	NA	1	NM_026868	68904	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	0.065000	0.592040	
mm_26243.1	chr3	141465502	141465702	+	1	NA	NA	NA	38	NM_001293561	22253	Mm.24430	NM_009472	ENSMUSG00000059921	Unc5c	B130051O18Rik|Unc5h3|rcm	unc-5 netrin receptor C	protein-coding	0.050000	0.631841	
mm_108989.1	chr12	102757918	102758118	+	1	NA	NA	NA	43	NM_025666	66622	Mm.34261	NM_025666	ENSMUSG00000041712	Ubr7	5730410I19Rik|AA589405|AW557761	ubiquitin protein ligase E3 component n-recognin 7 (putative)	protein-coding	0.110000	0.726368	
mm_167465.1	chr8	124614470	124614670	+	1	NA	NA	NA	38459	NM_023709	73647	Mm.6209	NM_023709	ENSMUSG00000031981	Capn9	2200003B16Rik|GC36|nCL-4|nCL4	calpain 9	protein-coding	0.025000	0.562189	
mm_38254.1	chr4	136738072	136738272	-	1	NA	NA	NA	97840	NM_001290753	13844	Mm.250981	NM_010142	ENSMUSG00000028664	Ephb2	Cek5|Drt|ETECK|Erk|Hek5|Nuk|Prkm5|Qek5|Sek3|Tyro5	Eph receptor B2	protein-coding	0.000000	0.412935	
mm_11253.1	chr2	29892964	29893164	+	1	NA	NA	NA	3001	NM_013615	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.025000	0.502488	
mm_31429.1	chr4	48085428	48085628	+	1	NA	NA	NA	34282	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.005000	0.422886	
mm_121849.1	chr14	20640870	20641070	-	1	NA	NA	NA	15570	NM_021508	59011	Mm.439911	NM_021508	ENSMUSG00000068697	Myoz1	2310001N11Rik|AV090278|FATZ|Myoz	myozenin 1	protein-coding	0.115000	0.651741	
mm_93320.1	chr10	99132195	99132395	-	1	NA	NA	NA	24160	NM_015737	14426	Mm.314	NM_015737	ENSMUSG00000090035	Galnt4	AV011803	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	protein-coding	0.010000	0.532338	
mm_101135.1	chr11	12464765	12464965	-	1	NA	NA	NA	95	NM_172496	12808	Mm.22847	NM_172496	ENSMUSG00000020173	Cobl	-	cordon-bleu WH2 repeat	protein-coding	0.155000	0.751244	
mm_122095.1	chr14	30716839	30717039	-	1	NA	NA	NA	1324	NM_001166532	54650	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.040000	0.472637	
mm_76424.1	chr8	84977897	84978097	-	1	NA	NA	NA	751	NM_008416	16477	Mm.1167	NM_008416	ENSMUSG00000052837	Junb	-	jun B proto-oncogene	protein-coding	0.090000	0.711443	
mm_103575.1	chr11	78073650	78073850	-	1	NA	NA	NA	-509	NR_105850	102466649		NR_105850	ENSMUSG00000104813	Mir451b	mmu-mir-451b	microRNA 451b	ncRNA	0.020000	0.552239	
mm_53500.1	chr6	135362579	135362779	+	1	NA	NA	NA	-252	NM_010128	13730	Mm.182785	NM_010128	ENSMUSG00000030208	Emp1	I-8-09|TMP	epithelial membrane protein 1	protein-coding	0.025000	0.482587	
mm_133323.1	chr16	78222518	78222718	+	1	NA	NA	NA	32836	NR_045698	100503619	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.005000	0.447761	
mm_170666.1	chr2	11637049	11637249	-	1	NA	NA	NA	-5643	NM_008367	16184	Mm.915	NM_008367	ENSMUSG00000026770	Il2ra	CD25|Il2r|Ly-43	interleukin 2 receptor, alpha chain	protein-coding	0.010000	0.487562	-77(CCACATAAAAGC,-,0.00)
mm_6510.1	chr1	74305514	74305714	-	1	NA	NA	NA	-1278	NM_027154	69660	Mm.261182	NM_027154	ENSMUSG00000006301	Tmbim1	2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161	transmembrane BAX inhibitor motif containing 1	protein-coding	0.010000	0.522388	
mm_10745.1	chr2	23155420	23155620	+	1	NA	NA	NA	504	NM_025979	67121	Mm.253721	NM_025979	ENSMUSG00000026779	Mastl	2700091H24Rik|C88295|GW|GWL|MAST-L|THC2	microtubule associated serine/threonine kinase-like	protein-coding	0.010000	0.502488	
mm_157700.1	chrX	60891611	60891811	-	1	NA	NA	NA	1719	NM_009237	20675	Mm.35784	NM_009237	ENSMUSG00000045179	Sox3	Sox-3	SRY (sex determining region Y)-box 3	protein-coding	0.050000	0.542289	
mm_91361.1	chr10	28986134	28986334	-	1	NA	NA	NA	72	NM_026336	67719	Mm.440480	NM_026336	ENSMUSG00000015519	2310057J18Rik	2210414P04Rik|Leg1	RIKEN cDNA 2310057J18 gene	protein-coding	0.010000	0.507463	
mm_83305.1	chr9	44033963	44034163	-	1	NA	NA	NA	-9321	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.025000	0.467662	
mm_7001.1	chr1	86437951	86438151	-	1	NA	NA	NA	11722	NM_027966	71863	Mm.179627	NM_027966	ENSMUSG00000036574	1700019O17Rik	-	RIKEN cDNA 1700019O17 gene	protein-coding	0.010000	0.492537	
mm_138999.1	chr17	45556165	45556365	+	1	NA	NA	NA	565	NM_001304956	18037	Mm.57043	NM_008690	ENSMUSG00000023947	Nfkbie	I-kappa-B-epsilon|IKBE|IkB-E|NF-kappa-BIE|ikB-epsilon	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	protein-coding	0.045000	0.601990	
mm_39200.1	chr4	156026116	156026316	-	1	NA	NA	NA	-126	NM_009400	21936	Mm.3180	NM_009400	ENSMUSG00000041954	Tnfrsf18	AITR|Gitr	tumor necrosis factor receptor superfamily, member 18	protein-coding	0.010000	0.557214	
mm_172809.1	chr9	12367948	12368148	-	1	NA	NA	NA	737807	NR_040755	78219	Mm.414868	NR_040755	ENSMUSG00000111830	4930568E12Rik	-	RIKEN cDNA 4930568E12 gene	ncRNA	0.010000	0.348259	
mm_122612.1	chr14	51057582	51057782	-	1	NA	NA	NA	-440	NM_001011875	497106	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	0.015000	0.507463	
mm_126853.1	chr15	89211464	89211664	+	1	NA	NA	NA	5	NM_027805	71474	Mm.184055	NM_026813	ENSMUSG00000036561	Ppp6r2	1110033O10Rik|8430411H09Rik|B230107H12Rik|Pp6r2|Saps2	protein phosphatase 6, regulatory subunit 2	protein-coding	0.220000	0.865672	
mm_143510.1	chr17	72604539	72604739	-	1	NA	NA	NA	-332	NM_007439	11682	Mm.311854	NM_007439	ENSMUSG00000055471	Alk	CD246|Tcrz	anaplastic lymphoma kinase	protein-coding	0.110000	0.721393	
mm_95658.1	chr11	53770715	53770915	+	1	NA	NA	NA	342	NM_001159396	16362	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.015000	0.572139	
mm_35002.1	chr4	156215798	156215998	+	1	NA	NA	NA	-29	NM_172417	74183	Mm.431343	NM_172417	ENSMUSG00000078486	Perm1	2310042D19Rik	PPARGC1 and ESRR induced regulator, muscle 1	protein-coding	0.010000	0.527363	
mm_43469.1	chr5	136693560	136693760	+	1	NA	NA	NA	-16	NM_001303021	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.025000	0.562189	
mm_119984.1	chr14	55578071	55578271	+	1	NA	NA	NA	-323	NM_011189	19186	Mm.830	NM_011189	ENSMUSG00000022216	Psme1	AW413925|PA28a	proteasome (prosome, macropain) activator subunit 1 (PA28 alpha)	protein-coding	0.025000	0.492537	
mm_143610.1	chr17	78736417	78736617	-	1	NA	NA	NA	43	NM_011500	268980	Mm.311915	NM_011500	ENSMUSG00000024077	Strn	AU022939|D130055P19	striatin, calmodulin binding protein	protein-coding	0.095000	0.736318	
mm_121832.1	chr14	20496684	20496884	-	1	NA	NA	NA	117	NM_029104	74843	Mm.295241	NM_029104	ENSMUSG00000021815	Mss51	4833444M15Rik|Zmynd17	MSS51 mitochondrial translational activator	protein-coding	0.010000	0.487562	
mm_27516.1	chr3	56183633	56183833	-	1	NA	NA	NA	-32	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.115000	0.746269	
mm_95390.1	chr11	49250006	49250206	+	1	NA	NA	NA	-446	NM_001110150	17308	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.020000	0.462687	
mm_83978.1	chr9	57262679	57262879	-	1	NA	NA	NA	-180	NM_028820	74211	Mm.428905	NM_028820	ENSMUSG00000032300	1700017B05Rik	AA682102|D9Ertd278e	RIKEN cDNA 1700017B05 gene	protein-coding	0.060000	0.587065	
mm_149469.1	chr19	11601745	11601945	+	1	NA	NA	NA	2959	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.000000	0.437811	
mm_38472.1	chr4	140661201	140661401	-	1	NA	NA	NA	4586	NM_001290803	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.015000	0.427861	
mm_52305.1	chr6	108828413	108828613	+	1	NA	NA	NA	-128	NM_138677	192193	Mm.21596	NM_138677	ENSMUSG00000030104	Edem1	A130059K23Rik|EDEM|mKIAA0212	ER degradation enhancer, mannosidase alpha-like 1	protein-coding	0.130000	0.791045	-35(GCCTATAGAGCC,+,0.00)
mm_136473.1	chr16	95750291	95750491	-	1	NA	NA	NA	47984	NM_011809	23872	Mm.290207	NM_011809	ENSMUSG00000022895	Ets2	AU022856|Ets-2	E26 avian leukemia oncogene 2, 3' domain	protein-coding	0.015000	0.497512	
mm_115018.1	chr13	98356137	98356337	+	1	NA	NA	NA	1992	NM_008242	15229	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	0.030000	0.472637	
mm_84056.1	chr9	58159066	58159266	-	1	NA	NA	NA	55	NM_012043	26968	Mm.367887	NM_012043	ENSMUSG00000037206	Islr	AW553146|Meflin	immunoglobulin superfamily containing leucine-rich repeat	protein-coding	0.015000	0.532338	
mm_153189.1	chr19	34508980	34509180	-	1	NA	NA	NA	18394	NM_001111100	16889	Mm.157545	NM_021460	ENSMUSG00000024781	Lipa	AA960673|Lal|Lip-1|Lip1	lysosomal acid lipase A	protein-coding	0.000000	0.338308	
mm_10591.1	chr2	18672350	18672550	+	1	NA	NA	NA	-12	NM_147778	12238	Mm.249586	NM_147778	ENSMUSG00000051154	Commd3	AW550818|Bup|D2Ertd542e	COMM domain containing 3	protein-coding	0.150000	0.696517	
mm_85650.1	chr9	107657779	107657979	-	1	NA	NA	NA	9520	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.030000	0.626866	
mm_125564.1	chr15	58936327	58936527	+	1	NA	NA	NA	2617	NM_023172	66218	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9	protein-coding	0.015000	0.542289	89(CCTTATATACCA,+,0.00)
mm_103585.1	chr11	78183463	78183663	-	1	NA	NA	NA	21	NM_207523	268449	Mm.22723	NM_207523	ENSMUSG00000058546	Rpl23a	BC029892|MDA20	ribosomal protein L23A	protein-coding	0.045000	0.477612	-65(CTATATATAAGC,-,0.00)
mm_82023.1	chr9	121777593	121777793	+	1	NA	NA	NA	86	NM_028202	72330	Mm.45734	NM_028202	ENSMUSG00000074001	Klhl40	2310024D23Rik|Kbtbd5	kelch-like 40	protein-coding	0.025000	0.601990	-34(CTCTATATATAG,-,0.00),-32(CTATATATAGCC,+,0.00)
mm_37067.1	chr4	116123557	116123757	-	1	NA	NA	NA	32	NM_009015	19366	Mm.3655	NM_009015	ENSMUSG00000028702	Rad54l	RAD54	RAD54 like (S. cerevisiae)	protein-coding	0.040000	0.527363	
mm_60202.1	chr7	43427572	43427772	+	1	NA	NA	NA	-2429	NM_177693	233187	Mm.267027	NM_177693	ENSMUSG00000004613	Lim2	19kDa|4833403J20|MP19|To3	lens intrinsic membrane protein 2	protein-coding	0.020000	0.507463	
mm_16525.1	chr2	181520488	181520688	+	1	NA	NA	NA	103	NM_001271584	13002	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0.140000	0.721393	
mm_70773.1	chr8	22185970	22186170	+	1	NA	NA	NA	-251	NM_001004140	80986	Mm.22448	NM_001004140	ENSMUSG00000037725	Ckap2	AI461656|AW228814|LB1	cytoskeleton associated protein 2	protein-coding	0.020000	0.497512	
mm_29642.1	chr3	121838012	121838212	-	1	NA	NA	NA	-22897	NM_008991	19299	Mm.399042	NM_008991	ENSMUSG00000028127	Abcd3	AI313901|AU018866|AW146054|PMP68|PMP70|Pxmp1	ATP-binding cassette, sub-family D (ALD), member 3	protein-coding	0.010000	0.373134	
mm_66571.1	chr7	45322755	45322955	-	1	NA	NA	NA	-2103	NR_110499	100040970	Mm.289810	NR_110499	ENSMUSG00000046721	Rpl14-ps1	ENSMUSG00000046721|Gm9811	ribosomal protein L14, pseudogene 1	pseudo	0.030000	0.542289	
mm_42017.1	chr5	108268811	108269011	+	1	NA	NA	NA	14	NM_026106	13486	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0.110000	0.701493	
mm_63717.1	chr7	130774059	130774259	+	1	NA	NA	NA	90	NM_001081038	330660	Mm.271550	NM_001081038	ENSMUSG00000040298	Btbd16	E330040A16Rik	BTB (POZ) domain containing 16	protein-coding	0.020000	0.557214	
mm_110676.1	chr12	66284303	66284503	-	1	NA	NA	NA	-2	NM_001162933	238217	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding	0.065000	0.552239	
mm_6387.1	chr1	72849155	72849355	-	1	NA	NA	NA	23868	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.030000	0.621891	
mm_108052.1	chr12	73913015	73913215	+	1	NA	NA	NA	5248	NM_001313919	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.005000	0.278607	-43(GGATTTTAAAGG,-,0.00)
mm_77464.1	chr8	122424889	122425089	-	1	NA	NA	NA	2904	NM_145834	234836	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.030000	0.616915	
mm_161894.1	chr18	42394333	42394533	+	1	NA	NA	NA	-164	NM_138945	18998	Mm.488204	NM_138945	ENSMUSG00000024497	Pou4f3	Brn3.1|Brn3c|ddl|dreidel	POU domain, class 4, transcription factor 3	protein-coding	0.095000	0.696517	-98(GGGTATAAATGC,-,0.00)
mm_60395.1	chr7	44475168	44475368	+	1	NA	NA	NA	4921	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.527363	28(CTTTTTATAAAC,+,0.00)
mm_120558.1	chr14	68120265	68120465	+	1	NA	NA	NA	-3387	NR_045897	100043072	Mm.242832	NR_045897		A230070E04Rik	Gm4210	RIKEN cDNA A230070E04 gene	ncRNA	0.015000	0.582090	
mm_32229.1	chr4	102224793	102224993	+	1	NA	NA	NA	-29849	NM_001177983	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.010000	0.318408	
mm_166186.1	chr5	32492189	32492389	+	1	NA	NA	NA	33319	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.005000	0.318408	
mm_86246.1	chr9	121314033	121314233	-	1	NA	NA	NA	-36961	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.025000	0.572139	
mm_43606.1	chr5	137887904	137888104	+	1	NA	NA	NA	-16246	NM_001024932	545812	Mm.332769	NM_001024932	ENSMUSG00000066682	Pilrb2	EG545812	paired immunoglobin-like type 2 receptor beta 2	protein-coding	0.005000	0.552239	
mm_5887.1	chr1	54155223	54155423	-	1	NA	NA	NA	39711	NM_001001883	329152	Mm.132150	NM_172655	ENSMUSG00000042807	Hecw2	A730039N16Rik|D030049F17Rik|Gm971|Nedl2|mKIAA1301	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.005000	0.338308	
mm_161572.1	chr16	22161424	22161624	-	1	NA	NA	NA	1775	NM_183029	319765	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.075000	0.562189	
mm_61867.1	chr7	89404262	89404462	+	1	NA	NA	NA	-4	NM_008055	14366	Mm.86755	NM_008055	ENSMUSG00000049791	Fzd4	Fz4	frizzled class receptor 4	protein-coding	0.125000	0.731343	
mm_167531.1	chr9	21291156	21291356	-	1	NA	NA	NA	-47	NM_009878	12581	Mm.29020	NM_009878	ENSMUSG00000096472	Cdkn2d	INK4d|p19|p19INK4d	cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	protein-coding	0.085000	0.711443	
mm_2668.1	chr1	127205146	127205346	+	1	NA	NA	NA	260	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.110000	0.731343	
mm_37421.1	chr4	122885650	122885850	-	1	NA	NA	NA	307	NM_007598	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.060000	0.611940	
mm_45491.1	chr5	71657833	71658033	-	1	NA	NA	NA	375	NM_010251	14397	Mm.248731	NM_010251	ENSMUSG00000029211	Gabra4	Gabra-4	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	protein-coding	0.125000	0.741294	
mm_49875.1	chr6	38585715	38585915	+	1	NA	NA	NA	30092	NM_001331223	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.015000	0.527363	
mm_6063.1	chr1	60566723	60566923	-	1	NA	NA	NA	-58	NM_001045513	77300	Mm.440325	NM_001045513	ENSMUSG00000026014	Raph1	9430025M21Rik|C730009O10Rik|Lpd	Ras association (RalGDS/AF-6) and pleckstrin homology domains 1	protein-coding	0.175000	0.815920	
mm_157276.1	chrX	20581253	20581453	-	1	NA	NA	NA	31535	NM_009060	19733	Mm.2118	NM_009060	ENSMUSG00000023070	Rgn	AI265316|GNL|SMP30	regucalcin	protein-coding	0.020000	0.373134	
mm_78284.1	chr9	22156760	22156960	+	1	NA	NA	NA	14	NM_001082532	66268	Mm.28924	NM_025457	ENSMUSG00000010607	Pigyl	1810008A14Rik|PIG-Y|Pigy	phosphatidylinositol glycan anchor biosynthesis, class Y-like	protein-coding	0.105000	0.671642	
mm_140686.1	chr17	13345701	13345901	-	1	NA	NA	NA	-8771	NM_001167578	100041352	Mm.490251	NM_001167578	ENSMUSG00000052469	Tcp10c	D17Leh66C|D17Leh66ca|Gm9880|T66C-a|Tcp-10c	t-complex protein 10c	protein-coding	0.015000	0.572139	
mm_59901.1	chr7	30308695	30308895	+	1	NA	NA	NA	42	NM_198027	233065	Mm.276277	NM_198027	ENSMUSG00000042831	Alkbh6	AI839550|Abh6|C130099A02	alkB homolog 6	protein-coding	0.065000	0.592040	
mm_73191.1	chr8	95370022	95370222	+	1	NA	NA	NA	17826	NM_008609	17388	Mm.217116	NM_008609	ENSMUSG00000031790	Mmp15	AI503551|MT-MMP 2|MT2-MMP	matrix metallopeptidase 15	protein-coding	0.045000	0.597015	
mm_164043.1	chr14	92875320	92875520	+	1	NA	NA	NA	1013468	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.000000	0.407960	
mm_44452.1	chr5	21773724	21773924	-	1	NA	NA	NA	11341	NM_009584	22791	Mm.266312	NM_009584	ENSMUSG00000029014	Dnajc2	AU020218|MIDA1|Zrf1|Zrf2	DnaJ heat shock protein family (Hsp40) member C2	protein-coding	0.025000	0.378109	
mm_59661.1	chr7	28267771	28267971	+	1	NA	NA	NA	-10	NM_198425	386655	Mm.258201	NM_198425	ENSMUSG00000046058	Eid2	Cri2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding	0.165000	0.731343	
mm_31349.1	chr4	46650194	46650394	+	1	NA	NA	NA	-95	NM_198664	381605	Mm.331595	NM_198664	ENSMUSG00000039813	Tbc1d2	A630005A06Rik|BC022630|Gm1037|PARIS-1|PARIS1	TBC1 domain family, member 2	protein-coding	0.115000	0.641791	48(CTGTTTAAAAAC,-,0.00)
mm_53786.1	chr6	146585601	146585801	+	1	NA	NA	NA	7790	NM_026218	67529	Mm.333499	NM_026218	ENSMUSG00000040242	Fgfr1op2	1500031J01Rik	FGFR1 oncogene partner 2	protein-coding	0.015000	0.412935	
mm_106121.1	chr11	116359369	116359569	-	1	NA	NA	NA	-24115	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.020000	0.522388	
mm_171316.1	chr3	95929157	95929357	+	1	NA	NA	NA	0	NM_001253758	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.060000	0.611940	
mm_38248.1	chr4	136602687	136602887	-	1	NA	NA	NA	-64	NM_001347221	99982	Mm.28540	NM_133872	ENSMUSG00000036940	Kdm1a	1810043O07Rik|AA408884|Aof2|D4Ertd478e|Kdm1|Lsd1|mKIAA0601	lysine (K)-specific demethylase 1A	protein-coding	0.125000	0.681592	
mm_109554.1	chr12	111737582	111737782	+	1	NA	NA	NA	-21167	NM_008450	16593	Mm.278357	NM_008450	ENSMUSG00000021288	Klc1	AI874768|Kns2	kinesin light chain 1	protein-coding	0.015000	0.462687	
mm_97495.1	chr11	78343436	78343636	+	1	NA	NA	NA	41	NM_011676	22248	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.130000	0.776119	
mm_145182.1	chr18	48045255	48045455	+	1	NA	NA	NA	20	NM_001025388	433182	Mm.70666	NM_001025388	ENSMUSG00000059040	Eno1b	EG433182|Eno1|Gm5506	enolase 1B, retrotransposed	protein-coding	0.005000	0.447761	
mm_25286.1	chr3	105704593	105704793	+	1	NA	NA	NA	94	NM_175398	109050	Mm.212591	NM_175398	ENSMUSG00000048458	Fam212b	6530418L21Rik|inka2	family with sequence similarity 212, member B	protein-coding	0.080000	0.621891	
mm_92583.1	chr10	80031365	80031565	-	1	NA	NA	NA	8194	NM_025554	66420	Mm.18579	NM_025554	ENSMUSG00000004667	Polr2e	2410021N14Rik|25kDa|AW208866|RPB5|XAP4	polymerase (RNA) II (DNA directed) polypeptide E	protein-coding	0.010000	0.482587	
mm_56617.1	chr6	112693499	112693699	-	1	NA	NA	NA	3071	NM_021385	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.005000	0.378109	
mm_103228.1	chr11	70669959	70670159	-	1	NA	NA	NA	-643	NM_001167669	216873	Mm.432524	NM_172561	ENSMUSG00000018287	Spag7	5730443G10|ACRP|FSA-1|Fsa1l	sperm associated antigen 7	protein-coding	0.035000	0.592040	
mm_78024.1	chr9	13765837	13766037	+	1	NA	NA	NA	16756	NR_024025	77116	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.010000	0.378109	-77(TCCTAGAAAAGC,-,0.00)
mm_36769.1	chr4	102569000	102569200	-	1	NA	NA	NA	-960	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.010000	0.452736	
mm_18869.1	chr2	75938330	75938530	-	1	NA	NA	NA	32	NM_028235	72421	Mm.275109	NM_028235	ENSMUSG00000075273	Ttc30b	2510042P03Rik|Tcc30b	tetratricopeptide repeat domain 30B	protein-coding	0.060000	0.537313	
mm_48004.1	chr5	136161287	136161487	-	1	NA	NA	NA	9269	NM_178751	269717	Mm.308396	NM_178751	ENSMUSG00000039747	Orai2	A730041O15Rik|Tmem142b	ORAI calcium release-activated calcium modulator 2	protein-coding	0.020000	0.587065	
mm_24318.1	chr3	89430348	89430548	+	1	NA	NA	NA	234	NM_001293763	68911	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	0.085000	0.696517	
mm_54188.1	chr6	24167990	24168190	-	1	NA	NA	NA	2	NM_019481	55961	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0.015000	0.432836	
mm_91151.1	chr10	20365398	20365598	-	1	NA	NA	NA	17679	NM_027930	71804	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0.025000	0.537313	
mm_108692.1	chr12	86895229	86895429	+	1	NA	NA	NA	-10515	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.015000	0.522388	87(TCTTTTATGCTG,+,0.00)
mm_134503.1	chr16	19063144	19063344	-	1	NA	NA	NA	186494	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|OTTMUSG00000026264|Tuple1	histone cell cycle regulator	protein-coding	0.005000	0.422886	
mm_42265.1	chr5	114131102	114131302	+	1	NA	NA	NA	46	NM_011677	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.095000	0.681592	
mm_153649.1	chr19	44294863	44295063	-	1	NA	NA	NA	1287	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.030000	0.527363	
mm_3634.1	chr1	152807826	152808026	+	1	NA	NA	NA	7773	NM_010877	17970	Mm.270307	NM_010877	ENSMUSG00000026480	Ncf2	NOXA2|Ncf-2|p67phox	neutrophil cytosolic factor 2	protein-coding	0.045000	0.552239	
mm_633.1	chr1	40356163	40356363	+	1	NA	NA	NA	31636	NM_133193	107527	Mm.155583	NM_133193	ENSMUSG00000070942	Il1rl2	AI481289|AW551444|IL-1Rrp2	interleukin 1 receptor-like 2	protein-coding	0.010000	0.522388	
mm_113644.1	chr13	42301330	42301530	+	1	NA	NA	NA	-46	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.040000	0.547264	
mm_159816.1	chr5	120907385	120907585	-	1	NA	NA	NA	40	NM_145211	246730	Mm.14301	NM_145211	ENSMUSG00000052776	Oas1a	L3	2'-5' oligoadenylate synthetase 1A	protein-coding	0.025000	0.547264	
mm_130095.1	chr15	89425242	89425442	-	1	NA	NA	NA	520	NM_009948	12895	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	0.045000	0.651741	
mm_61566.1	chr7	79691783	79691983	+	1	NA	NA	NA	22303	NM_010626	16576	Mm.101633	NM_010626	ENSMUSG00000050382	Kif7	-	kinesin family member 7	protein-coding	0.005000	0.358209	
mm_129800.1	chr15	82899701	82899901	-	1	NA	NA	NA	721	NR_045068	100504637	Mm.440928	NR_045068	ENSMUSG00000100199	Gm20324	-	predicted gene, 20324	ncRNA	0.140000	0.756219	
mm_52738.1	chr6	120440987	120441187	+	1	NA	NA	NA	-22110	NM_008359	16172	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.010000	0.442786	
mm_49543.1	chr6	30359374	30359574	+	1	NA	NA	NA	31536	NM_172735	232679	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	0.020000	0.487562	
mm_154639.1	chrX	7764216	7764416	+	1	NA	NA	NA	275	NM_001271491	209446	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	0.035000	0.532338	
mm_7171.1	chr1	92127797	92127997	-	1	NA	NA	NA	52444	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.025000	0.457711	
mm_84193.1	chr9	60521938	60522138	-	1	NA	NA	NA	-11003	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.150000	0.815920	
mm_167479.1	chr8	129067059	129067259	+	1	NA	NA	NA	25	NM_001168369	75453	Mm.286964	NM_029292	ENSMUSG00000056018	Ccdc7b	1700008F21Rik	coiled-coil domain containing 7B	protein-coding	0.040000	0.597015	
mm_133435.1	chr16	87698873	87699073	+	1	NA	NA	NA	19	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.145000	0.771144	
mm_90873.1	chr10	9027140	9027340	-	1	NA	NA	NA	-141170	NM_175155	70097	Mm.338275	NM_175155	ENSMUSG00000015305	Sash1	1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790	SAM and SH3 domain containing 1	protein-coding	0.030000	0.472637	
mm_166251.1	chr5	81020037	81020237	+	1	NA	NA	NA	-434	NM_001347367	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.080000	0.577114	
mm_123036.1	chr14	55559896	55560096	-	1	NA	NA	NA	-33	NR_037572	28199	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.070000	0.606965	
mm_135106.1	chr16	35652168	35652368	-	1	NA	NA	NA	110906	NM_013661	20357	Mm.42015	NM_013661	ENSMUSG00000052133	Sema5b	AI893641|SemG|Semag|mKIAA1445	sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B	protein-coding	0.015000	0.507463	-33(CCTTAAATACTG,+,0.00)
mm_119353.1	chr14	41114158	41114358	+	1	NA	NA	NA	9225	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.005000	0.502488	
mm_154178.1	chr19	58743980	58744180	-	1	NA	NA	NA	15193	NM_018874	18946	Mm.10753	NM_018874	ENSMUSG00000042179	Pnliprp1	Plrp1	pancreatic lipase related protein 1	protein-coding	0.005000	0.467662	
mm_126841.1	chr15	89059695	89059895	+	1	NA	NA	NA	69	NM_001002005	406218	Mm.483059	NM_001002005	ENSMUSG00000058441	Panx2	-	pannexin 2	protein-coding	0.145000	0.825871	
mm_69194.1	chr7	127335030	127335230	-	1	NA	NA	NA	10184	NM_146202	233890	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0.005000	0.437811	
mm_90115.1	chr10	117277641	117277841	+	1	NA	NA	NA	4531	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.010000	0.487562	
mm_19465.1	chr2	92401195	92401395	-	1	NA	NA	NA	-32	NM_011162	19099	Mm.2720	NM_011162	ENSMUSG00000027223	Mapk8ip1	IB1|JIP-1|Jip1|Prkm8ip|Skip|mjip-2a	mitogen-activated protein kinase 8 interacting protein 1	protein-coding	0.180000	0.820896	
mm_162399.1	chr1	84242430	84242630	+	1	NA	NA	NA	-23569	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.412935	
mm_26733.1	chr3	5576037	5576237	-	1	NA	NA	NA	111	NM_001163301	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.105000	0.651741	
mm_62093.1	chr7	94042664	94042864	+	1	NA	NA	NA	962885	NM_021427	58238	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.040000	0.532338	
mm_128778.1	chr15	66792758	66792958	-	1	NA	NA	NA	38971	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.005000	0.462687	
mm_172934.1	chr9	78175524	78175724	-	1	NA	NA	NA	-290	NR_040401	320295	Mm.131285	NR_040401	ENSMUSG00000097574	C920006O11Rik	-	RIKEN cDNA C920006O11 gene	ncRNA	0.040000	0.522388	-42(CCTTATATACCT,+,0.00)
mm_40126.1	chr5	34998958	34999158	+	1	NA	NA	NA	-20	NM_001163512	71729	Mm.196208	NM_173402	ENSMUSG00000029101	Rgs12	1200016K18Rik|4632412M04Rik|AI481290|E130309H11	regulator of G-protein signaling 12	protein-coding	0.015000	0.532338	
mm_85170.1	chr9	96478509	96478709	-	1	NA	NA	NA	66	NM_011279	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.155000	0.746269	
mm_99013.1	chr11	98863528	98863728	+	1	NA	NA	NA	30	NM_197940	68524	Mm.28661	NM_197940	ENSMUSG00000038013	Wipf2	1110014J05Rik|5730509C05Rik|AA407487|Gm1176|Wich|Wire	WAS/WASL interacting protein family, member 2	protein-coding	0.105000	0.681592	
mm_136839.1	chr17	12754720	12754920	+	1	NA	NA	NA	13509	NR_027784	104103	Mm.26553	NR_002853	ENSMUSG00000078247	Airn	2810051F02Rik|2810434M15Rik|AI256653|AI597500|AW049873|Air|B930018I07Rik|D17Ertd663e|IGF2RAS	antisense Igf2r RNA	ncRNA	0.005000	0.482587	
mm_164904.1	chr18	68007404	68007604	+	1	NA	NA	NA	74247	NM_172631	52662	Mm.440183	NM_172631	ENSMUSG00000024544	Ldlrad4	8230401C20Rik|A430083H02|A430108L08Rik|C18orf1|D18Ertd653e|D330030L18Rik	low density lipoprotein receptor class A domain containing 4	protein-coding	0.040000	0.477612	
mm_19213.1	chr2	84635629	84635829	-	1	NA	NA	NA	14781	NM_001085453	12388	Mm.35738	NM_007615	ENSMUSG00000034101	Ctnnd1	AA409437|AU019353|Catns|Ctnnd|P120|mKIAA0384	catenin (cadherin associated protein), delta 1	protein-coding	0.005000	0.532338	
mm_13522.1	chr2	110013399	110013599	+	1	NA	NA	NA	-4318	NM_026613	68201	Mm.181767	NM_026613	ENSMUSG00000027160	Ccdc34	2810027O19Rik|4930522P10Rik|AI596202	coiled-coil domain containing 34	protein-coding	0.000000	0.293532	
mm_144040.1	chr17	90292490	90292690	-	1	NA	NA	NA	163290	NM_001346958	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.015000	0.432836	
mm_53695.1	chr6	142756590	142756790	+	1	NA	NA	NA	4	NM_009908	12764	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.110000	0.726368	
mm_163391.1	chr12	62065954	62066154	+	1	NA	NA	NA	542887	NM_001310586	238205	Mm.28802	NM_178714	ENSMUSG00000035653	Lrfn5	AI427653|AI604817|C130061B21|mKIAA4208	leucine rich repeat and fibronectin type III domain containing 5	protein-coding	0.005000	0.353234	
mm_22043.1	chr2	168229991	168230191	-	1	NA	NA	NA	288	NM_010072	13480	Mm.422657	NM_010072	ENSMUSG00000078919	Dpm1	AI118379|AI194292	dolichol-phosphate (beta-D) mannosyltransferase 1	protein-coding	0.115000	0.716418	
mm_171131.1	chr3	147225322	147225522	-	1	NA	NA	NA	373055	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.030000	0.492537	-84(CCTTATCTAGTC,+,0.00)
mm_33162.1	chr4	126017810	126018010	+	1	NA	NA	NA	-6749	NR_045561	12986	Mm.271701	NM_007782	ENSMUSG00000028859	Csf3r	Cd114|Csfgr|G-CSF-R|G-CSFR	colony stimulating factor 3 receptor (granulocyte)	protein-coding	0.015000	0.567164	
mm_23986.1	chr3	86142981	86143181	+	1	NA	NA	NA	-413	NM_016959	20091	Mm.391785	NM_016959	ENSMUSG00000028081	Rps3a1	Rps3a	ribosomal protein S3A1	protein-coding	0.030000	0.467662	
mm_88347.1	chr10	75837444	75837644	+	1	NA	NA	NA	-2663	NM_010361	14872	Mm.24118	NM_010361	ENSMUSG00000033318	Gstt2	AI266894|Yrs|mGSTT2	glutathione S-transferase, theta 2	protein-coding	0.050000	0.606965	
mm_7452.1	chr1	120265217	120265417	-	1	NA	NA	NA	-37	NM_133186	68428	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.075000	0.696517	
mm_48115.1	chr5	137116338	137116538	-	1	NA	NA	NA	-231	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.030000	0.552239	
mm_1684.1	chr1	74856525	74856725	+	1	NA	NA	NA	1596	NM_009872	12570	Mm.153833	NM_009872	ENSMUSG00000090071	Cdk5r2	B230310J22Rik|p39	cyclin-dependent kinase 5, regulatory subunit 2 (p39)	protein-coding	0.040000	0.592040	
mm_51179.1	chr6	70726698	70726898	+	1	NA	NA	NA	65377	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.547264	
mm_18747.1	chr2	73312614	73312814	-	1	NA	NA	NA	62	NM_029022	74616	Mm.247457	NM_029022	ENSMUSG00000008226	Scrn3	4833415E20Rik|AI427019|AV002033|Ses3	secernin 3	protein-coding	0.135000	0.701493	
mm_30457.1	chr3	153929535	153929735	-	1	NA	NA	NA	15008	NM_007382	11364	Mm.10530	NM_007382	ENSMUSG00000062908	Acadm	AU018656|MCAD	acyl-Coenzyme A dehydrogenase, medium chain	protein-coding	0.040000	0.507463	
mm_51209.1	chr6	71334015	71334215	+	1	NA	NA	NA	11303	NM_009858	12526	Mm.333148	NM_009858	ENSMUSG00000053044	Cd8b1	Cd8b|Ly-3|Ly-C|Lyt-3	CD8 antigen, beta chain 1	protein-coding	0.035000	0.532338	
mm_48420.1	chr5	140386059	140386259	-	1	NA	NA	NA	3149	NM_172277	231834	Mm.27098	NM_172277	ENSMUSG00000029560	Snx8	B130023O14Rik	sorting nexin 8	protein-coding	0.005000	0.432836	
mm_4820.1	chr1	185431870	185432070	+	1	NA	NA	NA	9849	NR_038006	319562	Mm.184335	NM_176943	ENSMUSG00000051295	9630028B13Rik	-	RIKEN cDNA 9630028B13 gene	ncRNA	0.030000	0.482587	-80(GCCTATAAAAGA,-,0.00)
mm_12062.1	chr2	59384024	59384224	+	1	NA	NA	NA	2558	NR_040510	76676	Mm.110038	NR_040510	ENSMUSG00000087455	5330411J11Rik	-	RIKEN cDNA 5330411J11 gene	ncRNA	0.015000	0.502488	-34(GCCTATAAGAAG,-,0.00)
mm_76216.1	chr8	83458312	83458512	-	1	NA	NA	NA	-16	NM_001039137	56367	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	0.040000	0.587065	
mm_68336.1	chr7	106504898	106505098	-	1	NA	NA	NA	-63925	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.000000	0.467662	
mm_128941.1	chr15	74734196	74734396	-	1	NA	NA	NA	17	NM_026671	68311	Mm.306880	NM_026671	ENSMUSG00000022595	Lypd2	0610005K03Rik|Lypdc2|VLL	Ly6/Plaur domain containing 2	protein-coding	0.030000	0.621891	
mm_6842.1	chr1	84234014	84234214	-	1	NA	NA	NA	-15153	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.487562	-88(GTCCATAAAAGA,-,0.00)
mm_23708.1	chr3	68869215	68869415	+	1	NA	NA	NA	-271	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.105000	0.671642	
mm_152415.1	chr19	10668902	10669102	-	1	NA	NA	NA	9069	NM_021453	58803	Mm.34037	NM_021453	ENSMUSG00000024738	Pga5	1110035E17Rik|Pepf	pepsinogen 5, group I	protein-coding	0.010000	0.522388	
mm_44451.1	chr5	21768381	21768581	-	1	NA	NA	NA	16684	NM_009584	22791	Mm.266312	NM_009584	ENSMUSG00000029014	Dnajc2	AU020218|MIDA1|Zrf1|Zrf2	DnaJ heat shock protein family (Hsp40) member C2	protein-coding	0.005000	0.417910	
mm_157896.1	chrX	77795853	77796053	-	1	NA	NA	NA	7	NM_016979	19108	Mm.290338	NM_016979	ENSMUSG00000035725	Prkx	PKX1|Pkare	protein kinase, X-linked	protein-coding	0.135000	0.721393	
mm_9834.1	chr1	184033674	184033874	-	1	NA	NA	NA	224	NM_028516	73363	Mm.50115	NM_028516	ENSMUSG00000044854	1700056E22Rik	-	RIKEN cDNA 1700056E22 gene	protein-coding	0.105000	0.696517	
mm_99098.1	chr11	99936191	99936391	+	1	NA	NA	NA	0	NM_001025244	432602	Mm.246878	NM_001025244	ENSMUSG00000051481	Krtap31-2	OTTMUSG00000002177	keratin associated protein 31-2	protein-coding	0.000000	0.457711	-33(TTGTATAAAAGG,-,0.00)
mm_134361.1	chr16	16863847	16864047	-	1	NA	NA	NA	38	NM_001190325	16136	Mm.184441	NM_001190325	ENSMUSG00000075370	Igll1	BB139905|Igl-5|Igll|Lambda5	immunoglobulin lambda-like polypeptide 1	protein-coding	0.005000	0.532338	
mm_6146.1	chr1	64927986	64928186	-	1	NA	NA	NA	28738	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.025000	0.552239	
mm_102414.1	chr11	59202048	59202248	-	1	NA	NA	NA	283	NR_037964	72203	Mm.339566	NR_037964		2610507I01Rik	5033414D05Rik	RIKEN cDNA 2610507I01 gene	ncRNA	0.045000	0.557214	
mm_170986.1	chr2	73867855	73868055	+	1	NA	NA	NA	24684	NM_001284371	11909	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0.075000	0.507463	
mm_60138.1	chr7	38090454	38090654	+	1	NA	NA	NA	16936	NM_007633	12447	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	0.010000	0.497512	
mm_149625.1	chr19	17125544	17125744	+	1	NA	NA	NA	169526	NM_181348	353211	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.020000	0.467662	
mm_39084.1	chr4	154636110	154636310	-	1	NA	NA	NA	157	NR_045643	320939	Mm.436738	NR_045643		5930403L14Rik	-	RIKEN cDNA 5930403L14 gene	ncRNA	0.090000	0.701493	
mm_110117.1	chr12	26443827	26444027	-	1	NA	NA	NA	12525	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.412935	
mm_88014.1	chr10	67177703	67177903	+	1	NA	NA	NA	-7947	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.010000	0.373134	
mm_34746.1	chr4	152297113	152297313	+	1	NA	NA	NA	-1	NR_037908	57295	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|OTTMUSG00000010406|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	0.135000	0.736318	
mm_82449.1	chr9	15357569	15357769	-	1	NA	NA	NA	119	NM_176976	319675	Mm.218317	NM_176976	ENSMUSG00000046111	Cep295	5830418K08Rik|5832426L23Rik|Gm1131|Kiaa1731	centrosomal protein 295	protein-coding	0.090000	0.671642	
mm_97827.1	chr11	83041172	83041372	+	1	NA	NA	NA	-739	NR_073524	237887	Mm.341645	NM_181542	ENSMUSG00000072621	Slfn10-ps	Slfn10|mFLJ00257	schlafen 10, pseudogene	pseudo	0.000000	0.407960	
mm_20439.1	chr2	129307824	129308024	-	1	NA	NA	NA	2048	NM_010554	16175	Mm.15534	NM_010554	ENSMUSG00000027399	Il1a	Il-1a	interleukin 1 alpha	protein-coding	0.005000	0.373134	
mm_4948.1	chr1	191194212	191194412	+	1	NA	NA	NA	-10979	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.015000	0.507463	
mm_166162.1	chr5	17302644	17302844	+	1	NA	NA	NA	-173378	NM_027609	70935	Mm.332225	NM_027609	ENSMUSG00000058643	Speer4f1	4922502J04Rik|SPEER-4F|Speer4f	spermatogenesis associated glutamate (E)-rich protein 4F1	protein-coding	0.000000	0.363184	
mm_129401.1	chr15	78284246	78284446	-	1	NA	NA	NA	503	NR_106138	102466845		NR_106138	ENSMUSG00000099059	Mir7676-2	Gm27790|mmu-mir-7676-2	microRNA 7676-2	ncRNA	0.000000	0.522388	
mm_96529.1	chr11	68534122	68534322	+	1	NA	NA	NA	-21964	NM_146004	215723	Mm.131205	NM_146004	ENSMUSG00000048329	Mfsd6l	-	major facilitator superfamily domain containing 6-like	protein-coding	0.020000	0.547264	
mm_133148.1	chr16	70313964	70314164	+	1	NA	NA	NA	115	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.135000	0.761194	-33(CGCTATAAAGGG,-,0.00)
mm_34068.1	chr4	138456616	138456816	+	1	NA	NA	NA	1568	NM_025451	66259	Mm.41603	NM_025451	ENSMUSG00000046447	Camk2n1	1810006K23Rik|AI848599|AI891706	calcium/calmodulin-dependent protein kinase II inhibitor 1	protein-coding	0.015000	0.462687	
mm_23415.1	chr3	58525909	58526109	+	1	NA	NA	NA	-125	NM_030685	28146	Mm.29702	NM_030685	ENSMUSG00000027808	Serp1	D3Ucla1|Ramp4	stress-associated endoplasmic reticulum protein 1	protein-coding	0.100000	0.621891	
mm_64805.1	chr7	6696340	6696540	-	1	NA	NA	NA	-8	NM_011769	22776	Mm.89976	NM_011769	ENSMUSG00000002266	Zim1	-	zinc finger, imprinted 1	protein-coding	0.080000	0.641791	
mm_55374.1	chr6	57839819	57840019	-	1	NA	NA	NA	4538	NM_134183	171201	Mm.377179	NM_134183	ENSMUSG00000058588	Vmn1r21	V1rc28	vomeronasal 1 receptor 21	protein-coding	0.005000	0.482587	
mm_13391.1	chr2	103969553	103969753	+	1	NA	NA	NA	96	NM_001142336	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.070000	0.582090	
mm_23851.1	chr3	83008423	83008623	+	1	NA	NA	NA	799	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.035000	0.487562	
mm_110904.1	chr12	75735633	75735833	-	1	NA	NA	NA	-4	NM_030750	81535	Mm.280199	NM_030750	ENSMUSG00000021054	Sgpp1	AI463453|SPP|SPP1|Spph1	sphingosine-1-phosphate phosphatase 1	protein-coding	0.170000	0.786070	
mm_122150.1	chr14	31250920	31251120	-	1	NA	NA	NA	198	NM_027949	71838	Mm.5348	NM_027949	ENSMUSG00000021902	Phf7	1700006H01Rik|1700010P14Rik|AI427892|AW555949	PHD finger protein 7	protein-coding	0.080000	0.582090	
mm_136458.1	chr16	95259516	95259716	-	1	NA	NA	NA	2058	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.020000	0.512438	
mm_6029.1	chr1	59377265	59377465	-	1	NA	NA	NA	-104782	NM_008057	14369	Mm.297906	NM_008057	ENSMUSG00000041075	Fzd7	Fz7	frizzled class receptor 7	protein-coding	0.030000	0.562189	
mm_167029.1	chr7	68282855	68283055	+	1	NA	NA	NA	-6361	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.020000	0.427861	-33(CCATATATAGTC,+,0.00)
mm_149701.1	chr19	21377200	21377400	+	1	NA	NA	NA	95361	NM_010266	14544	Mm.45054	NM_010266	ENSMUSG00000058624	Gda	AU015411|AW047581|GAH	guanine deaminase	protein-coding	0.005000	0.422886	-34(CTGTATAAAAAG,-,0.00)
mm_52674.1	chr6	117907714	117907914	+	1	NA	NA	NA	10	NM_001166429	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.135000	0.731343	
mm_44119.1	chr5	149441767	149441967	+	1	NA	NA	NA	2207	NM_001310765	75860	Mm.159605	NM_029464	ENSMUSG00000029660	Tex26	4930588N13Rik	testis expressed 26	protein-coding	0.015000	0.517413	-63(GGCTTTATGAGG,-,0.00)
mm_23657.1	chr3	67892108	67892308	+	1	NA	NA	NA	-12	NM_001113419	100505386	Mm.331064	NM_001113419	ENSMUSG00000102422	Gm21949	Iqcj-schip1|Schip-1-iqcj|Schip1	predicted gene, 21949	protein-coding	0.035000	0.547264	
mm_35869.1	chr4	49520963	49521163	-	1	NA	NA	NA	20	NM_178603	28028	Mm.30052	NM_178603	ENSMUSG00000044018	Mrpl50	AA408971|AI317351|D4Wsu125e	mitochondrial ribosomal protein L50	protein-coding	0.065000	0.552239	
mm_8508.1	chr1	154395055	154395255	-	1	NA	NA	NA	-138249	NR_040629	78112	Mm.401935	NR_040629	ENSMUSG00000099933	4930452N14Rik	-	RIKEN cDNA 4930452N14 gene	ncRNA	0.000000	0.457711	
mm_113712.1	chr13	43531602	43531802	+	1	NA	NA	NA	28489	NM_001081059	76137	Mm.426290	NM_001081059	ENSMUSG00000021371	Mcur1	6230416A05Rik|AU015498|AV136929|AW554392|C88263|Ccdc90a	mitochondrial calcium uniporter regulator 1	protein-coding	0.005000	0.467662	
mm_168255.1	chr10	86705309	86705509	-	1	NA	NA	NA	35	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.080000	0.666667	
mm_121604.1	chr14	8172868	8173068	-	1	NA	NA	NA	24	NM_024221	68263	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0.075000	0.601990	
mm_58463.1	chr7	3366784	3366984	+	1	NA	NA	NA	-27158	NM_133190	81905	Mm.357990	NM_133190	ENSMUSG00000053395	Cacng8	-	calcium channel, voltage-dependent, gamma subunit 8	protein-coding	0.080000	0.616915	
mm_81629.1	chr9	110849418	110849618	+	1	NA	NA	NA	5012	NM_183103	74306	Mm.87419	NM_183103	ENSMUSG00000049719	Prss46	1700112C13Rik|79H19B|Tessp6	protease, serine 46	protein-coding	0.015000	0.542289	
mm_65769.1	chr7	28759873	28760073	-	1	NA	NA	NA	3799	NM_001195091	100504112	Mm.379654	NM_001195091	ENSMUSG00000096257	Ccer2	EG624918|Gm6537	coiled-coil glutamate-rich protein 2	protein-coding	0.055000	0.661692	
mm_132514.1	chr16	37539801	37540001	+	1	NA	NA	NA	7	NM_001042499	67657	Mm.28158	NM_026297	ENSMUSG00000022827	Rabl3	4930553C05Rik|AA958834	RAB, member RAS oncogene family-like 3	protein-coding	0.065000	0.572139	
mm_18896.1	chr2	76713393	76713593	-	1	NA	NA	NA	38178	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.030000	0.432836	
mm_125770.1	chr15	74563682	74563882	+	1	NA	NA	NA	47586	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0.210000	0.880597	
mm_113850.1	chr13	47207354	47207554	+	1	NA	NA	NA	13451	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.035000	0.547264	
mm_131806.1	chr16	22917834	22918034	+	1	NA	NA	NA	-448	NM_001083905	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.035000	0.517413	
mm_10190.1	chr2	4918798	4918998	+	1	NA	NA	NA	-98	NM_010726	16922	Mm.391704	NM_010726	ENSMUSG00000026664	Phyh	AI256161|AI265699|Lnap1|PAHX	phytanoyl-CoA hydroxylase	protein-coding	0.045000	0.621891	
mm_63161.1	chr7	123462259	123462459	+	1	NA	NA	NA	65	NM_001109045	11833	Mm.273175	NM_007474	ENSMUSG00000030762	Aqp8	AI255744|AQP-8	aquaporin 8	protein-coding	0.030000	0.537313	-34(GTCCTTTAAAAG,-,0.00),-33(TCCTTTAAAAGC,-,0.00),-32(CCTTTAAAAGCG,+,0.00)
mm_79436.1	chr9	56057417	56057617	+	1	NA	NA	NA	15672	NM_011992	26611	Mm.1782	NM_011992	ENSMUSG00000032320	Rcn2	AA408742|Tcbp49	reticulocalbin 2	protein-coding	0.005000	0.437811	
mm_124990.1	chr15	21592734	21592934	+	1	NA	NA	NA	481382	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.010000	0.353234	
mm_46281.1	chr5	100146995	100147195	-	1	NA	NA	NA	12713	NM_182841	231503	Mm.99790	NM_182841	ENSMUSG00000050640	Tmem150c	-	transmembrane protein 150C	protein-coding	0.010000	0.343284	
mm_47713.1	chr5	130000309	130000509	-	1	NA	NA	NA	2419	NM_010368	110006	Mm.3317	NM_010368	ENSMUSG00000025534	Gusb	AI747421|Gur|Gus|Gus-r|Gus-s|Gus-t|Gus-u|Gut|asd|g	glucuronidase, beta	protein-coding	0.025000	0.611940	
mm_84554.1	chr9	67703572	67703772	-	1	NA	NA	NA	24108	NR_106100	102466824		NR_106100	ENSMUSG00000098937	Mir7241	Gm27918|mmu-mir-7241	microRNA 7241	ncRNA	0.010000	0.427861	
mm_41914.1	chr5	105591546	105591746	+	1	NA	NA	NA	72175	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.000000	0.283582	63(CACCATATATGC,-,0.00),65(CCATATATGCAC,+,0.00)
mm_130246.1	chr15	96640521	96640721	-	1	NA	NA	NA	1341	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.020000	0.402985	
mm_85692.1	chr9	108079210	108079410	-	1	NA	NA	NA	-9	NM_001311152	84585	Mm.379272	NM_032543	ENSMUSG00000041528	Rnf123	BC003945|Kpc1	ring finger protein 123	protein-coding	0.115000	0.706468	
mm_50184.1	chr6	41641626	41641826	+	1	NA	NA	NA	-5321	NM_022413	64177	Mm.296889	NM_022413	ENSMUSG00000029868	Trpv6	CAT|CaT1|Cac|Ecac2|Otrpc3	transient receptor potential cation channel, subfamily V, member 6	protein-coding	0.010000	0.537313	
mm_38759.1	chr4	147868563	147868763	-	1	NA	NA	NA	56	NM_001025365	28010	Mm.250504	NM_133873	ENSMUSG00000029022	Miip	AA553001|AI853621|D4Wsu114e|IIP45	migration and invasion inhibitory protein	protein-coding	0.040000	0.507463	
mm_111074.1	chr12	80139169	80139369	-	1	NA	NA	NA	-6425	NR_033514	69548	Mm.269712	NR_033514	ENSMUSG00000097729	2310015A10Rik	5330419I17Rik	RIKEN cDNA 2310015A10 gene	ncRNA	0.020000	0.577114	
mm_168143.1	chr10	3254658	3254858	-	1	NA	NA	NA	13013	NM_001204916	670558	Mm.398582	NM_001204916	ENSMUSG00000091618	H60c	4632413I24Rik|Gm9491	histocompatibility 60c	protein-coding	0.025000	0.497512	
mm_111977.1	chr12	110087858	110088058	-	1	NA	NA	NA	70115	NR_045466	67280	Mm.390495	NR_045466		3110009F21Rik	-	RIKEN cDNA 3110009F21 gene	ncRNA	0.000000	0.462687	
mm_168789.1	chr12	19187035	19187235	-	1	NA	NA	NA	672625	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.030000	0.507463	-33(TGCTATAAAAGT,-,0.00)
mm_84978.1	chr9	85328367	85328567	-	1	NA	NA	NA	-1317	NM_001160379	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Fam46a	BAP014|D930050G01Rik	family with sequence similarity 46, member A	protein-coding	0.030000	0.562189	
mm_171463.1	chr4	145674405	145674605	+	1	NA	NA	NA	3808	NM_001103158	100041379	Mm.276881	NM_001103158	ENSMUSG00000058186	Zfp980	Gm13242|OTTMUSG00000011070	zinc finger protein 980	protein-coding	0.005000	0.507463	
mm_107352.1	chr12	32820689	32820889	+	1	NA	NA	NA	454	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.130000	0.751244	
mm_165877.1	chr4	41135636	41135836	+	1	NA	NA	NA	-285	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.095000	0.736318	
mm_92215.1	chr10	68239627	68239827	-	1	NA	NA	NA	38999	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.010000	0.422886	8(GCTTTTAGACCA,+,0.00)
mm_39264.1	chr5	3571568	3571768	+	1	NA	NA	NA	-48	NM_029843	77036	Mm.389069	NM_029843	ENSMUSG00000008307	1700109H08Rik	-	RIKEN cDNA 1700109H08 gene	protein-coding	0.000000	0.487562	
mm_76205.1	chr8	83332355	83332555	-	1	NA	NA	NA	31	NM_001170691	244548	Mm.38762	NM_178736	ENSMUSG00000035151	Elmod2	9830169G11Rik	ELMO/CED-12 domain containing 2	protein-coding	0.110000	0.661692	
mm_131960.1	chr16	24525046	24525246	+	1	NA	NA	NA	-4168	NR_038091	624582	Mm.439775	NR_038091		Morf4l1-ps1	A730098P11Rik	mortality factor 4 like 1, pseudogene 1	pseudo	0.005000	0.383085	
mm_158819.1	chrX	167332961	167333161	-	1	NA	NA	NA	-2490	NM_001290756	170743	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	0.010000	0.422886	
mm_153943.1	chr19	47507803	47508003	-	1	NA	NA	NA	-5079	NR_045322	100503104	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0.030000	0.482587	
mm_21131.1	chr2	154206346	154206546	-	1	NA	NA	NA	6066	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.030000	0.577114	
mm_2373.1	chr1	93300179	93300379	+	1	NA	NA	NA	5600	NM_178051	69821	Mm.52809	NM_178051	ENSMUSG00000026273	Mterf4	1810059A23Rik|4933412H03Rik|Mterfd2	mitochondrial transcription termination factor 4	protein-coding	0.005000	0.452736	
mm_25283.1	chr3	105639784	105639984	+	1	NA	NA	NA	47687	NM_017397	53975	Mm.272826	NM_017397	ENSMUSG00000027905	Ddx20	GEMIN3|dp103	DEAD (Asp-Glu-Ala-Asp) box polypeptide 20	protein-coding	0.005000	0.338308	
mm_35570.1	chr4	41640271	41640471	-	1	NA	NA	NA	-69	NM_027147	69638	Mm.372459	NM_027147	ENSMUSG00000028445	Enho	1110065P19Rik|2310040A07Rik	energy homeostasis associated	protein-coding	0.090000	0.691542	
mm_81247.1	chr9	107975516	107975716	+	1	NA	NA	NA	49	NM_023738	74153	Mm.277125	NM_023738	ENSMUSG00000032596	Uba7	1300004C08Rik|Ube1l	ubiquitin-like modifier activating enzyme 7	protein-coding	0.010000	0.522388	
mm_91524.1	chr10	37138800	37139000	-	1	NA	NA	NA	26	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.080000	0.517413	
mm_37184.1	chr4	117288449	117288649	-	1	NA	NA	NA	906	NM_001310730	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.045000	0.537313	48(GCTCTTAGAGGC,+,0.00)
mm_144517.1	chr18	24746485	24746685	+	1	NA	NA	NA	37962	NM_001289655	225288	Mm.329322	NM_175276	ENSMUSG00000034295	Fhod3	A930009H06Rik|FHOS2|mKIAA1695	formin homology 2 domain containing 3	protein-coding	0.025000	0.502488	
mm_80629.1	chr9	89199204	89199404	+	1	NA	NA	NA	31	NM_007534	12045	Mm.479217	NM_007534	ENSMUSG00000089929	Bcl2a1b	A1-b	B cell leukemia/lymphoma 2 related protein A1b	protein-coding	0.015000	0.512438	
mm_73458.1	chr8	106603267	106603467	+	1	NA	NA	NA	17	NM_009864	12550	Mm.35605	NM_009864	ENSMUSG00000000303	Cdh1	AA960649|ARC-1|E-cad|Ecad|L-CAM|UVO|Um	cadherin 1	protein-coding	0.085000	0.701493	
mm_93249.1	chr10	95447866	95448066	-	1	NA	NA	NA	30591	NR_045338	70523	Mm.158398	NR_045338	ENSMUSG00000097766	5730420D15Rik	-	RIKEN cDNA 5730420D15 gene	ncRNA	0.035000	0.537313	
mm_144844.1	chr18	36571605	36571805	+	1	NA	NA	NA	11102	NM_175375	108857	Mm.482287	NM_175375	ENSMUSG00000024483	Ankhd1	1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|Mask|mFLJ00246|mKIAA1085	ankyrin repeat and KH domain containing 1	protein-coding	0.005000	0.393035	87(CCCTATATAACC,+,0.00)
mm_150176.1	chr19	32595666	32595866	+	1	NA	NA	NA	51	NM_001201470	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.090000	0.676617	-6(CTTTTTATACCT,+,0.00)
mm_113911.1	chr13	49493501	49493701	+	1	NA	NA	NA	-11209	NM_001012324	407800	Mm.386931	NM_001012324	ENSMUSG00000043631	Ecm2	9030618O22Rik|BC065151|tenonectin	extracellular matrix protein 2, female organ and adipocyte specific	protein-coding	0.035000	0.507463	-21(TTCTTTAAAAGT,-,0.00),-20(TCTTTAAAAGTG,+,0.00)
mm_94612.1	chr11	16526010	16526210	+	1	NA	NA	NA	-17626	NM_001109971	20335	Mm.325350	NM_011343	ENSMUSG00000078974	Sec61g	-	SEC61, gamma subunit	protein-coding	0.010000	0.482587	
mm_56038.1	chr6	86669050	86669250	-	1	NA	NA	NA	9	NM_010751	17119	Mm.279580	NM_010751	ENSMUSG00000001156	Mxd1	AW122478|Mad|Mad1	MAX dimerization protein 1	protein-coding	0.140000	0.796020	
mm_76553.1	chr8	88361818	88362018	-	1	NA	NA	NA	273	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.135000	0.766169	
mm_85169.1	chr9	96438094	96438294	-	1	NA	NA	NA	40481	NM_011279	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.035000	0.621891	
mm_38167.1	chr4	135216937	135217137	-	1	NA	NA	NA	55723	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.045000	0.502488	
mm_151664.1	chr19	4156499	4156699	-	1	NA	NA	NA	1953	NM_016933	19265	Mm.271937	NM_016933	ENSMUSG00000045826	Ptprcap	AI605264|CD-45-AP|LPAP|LSM-1	protein tyrosine phosphatase, receptor type, C polypeptide-associated protein	protein-coding	0.005000	0.507463	
mm_17278.1	chr2	26092053	26092253	-	1	NA	NA	NA	243	NM_001037098	67991	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.035000	0.497512	67(GTTTTTAAAGCT,+,0.00)
mm_155400.1	chrX	72997165	72997365	+	1	NA	NA	NA	5186	NR_035517	100316779		NR_035517	ENSMUSG00000089357	Mir2137	mmu-mir-2137	microRNA 2137	ncRNA	0.010000	0.512438	
mm_81869.1	chr9	119052683	119052883	+	1	NA	NA	NA	5	NM_001164567	22351	Mm.83817	NM_011700	ENSMUSG00000038775	Vill	Villp	villin-like	protein-coding	0.025000	0.631841	
mm_113841.1	chr13	47193876	47194076	+	1	NA	NA	NA	-27	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.045000	0.631841	
mm_26619.1	chr3	152396278	152396478	+	1	NA	NA	NA	-306	NM_001287139	108946	Mm.379292	NM_198416	ENSMUSG00000039068	Zzz3	3110065C23Rik|6430567E01Rik|AA408566|AI481057|AW556059|R75514	zinc finger, ZZ domain containing 3	protein-coding	0.155000	0.786070	
mm_125669.1	chr15	65865581	65865781	+	1	NA	NA	NA	46573	NM_001347038	18256	Mm.41776	NM_010953	ENSMUSG00000015001	Oc90	Ocn-95|PLA2L|Pla2ll|oc95	otoconin 90	protein-coding	0.005000	0.462687	
mm_49623.1	chr6	30803729	30803929	+	1	NA	NA	NA	62530	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.010000	0.512438	
mm_22889.1	chr3	30647900	30648100	+	1	NA	NA	NA	114	NM_001290510	68307	Mm.389425	NM_026668	ENSMUSG00000027703	Lrriq4	4930558O21Rik	leucine-rich repeats and IQ motif containing 4	protein-coding	0.035000	0.552239	
mm_144697.1	chr18	34862447	34862647	+	1	NA	NA	NA	1340	NM_007913	13653	Mm.181959	NM_007913	ENSMUSG00000038418	Egr1	A530045N19Rik|ETR103|Egr-1|Krox-1|Krox-24|Krox24|NGF1-A|NGFI-A|NGFIA|TIS8|Zenk|Zfp-6|Zif268|egr	early growth response 1	protein-coding	0.040000	0.552239	
mm_12325.1	chr2	69393039	69393239	+	1	NA	NA	NA	12677	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.015000	0.497512	
mm_82864.1	chr9	31936799	31936999	-	1	NA	NA	NA	-23614	NM_013800	12023	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.040000	0.432836	
mm_161566.1	chr16	18622344	18622544	-	1	NA	NA	NA	-41	NM_010327	14724	Mm.475622	NM_010327	ENSMUSG00000050761	Gp1bb	-	glycoprotein Ib, beta polypeptide	protein-coding	0.040000	0.577114	
mm_159029.1	chr1	174391094	174391294	+	1	NA	NA	NA	148	NM_146714	258709	Mm.377646	NM_146714	ENSMUSG00000059503	Olfr248	MOR267-7|Olfr248-ps1|Olfr415	olfactory receptor 248	protein-coding	0.005000	0.467662	
mm_47574.1	chr5	124530912	124531112	-	1	NA	NA	NA	379	NM_021430	75695	Mm.41180	NM_021430	ENSMUSG00000029392	Rilpl1	2900002H16Rik|6330559I19Rik|GOSPEL	Rab interacting lysosomal protein-like 1	protein-coding	0.115000	0.751244	
mm_31170.1	chr4	43453732	43453932	+	1	NA	NA	NA	794	NM_001110320	12517	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.020000	0.557214	
mm_116945.1	chr13	56135311	56135511	-	1	NA	NA	NA	139	NM_012015	26914	Mm.283802	NM_012015	ENSMUSG00000015937	H2afy	H2AF12M|mH2a1|macroH2A1	H2A histone family, member Y	protein-coding	0.165000	0.786070	
mm_65093.1	chr7	19270345	19270545	-	1	NA	NA	NA	1409	NM_001282021	22323	Mm.9684	NM_009499	ENSMUSG00000030403	Vasp	-	vasodilator-stimulated phosphoprotein	protein-coding	0.005000	0.497512	
mm_64478.1	chr7	143053462	143053662	+	1	NA	NA	NA	124	NR_110355	97423	Mm.5250	NM_133790	ENSMUSG00000059277	R74862	-	expressed sequence R74862	ncRNA	0.060000	0.666667	
mm_124360.1	chr14	105177157	105177357	-	1	NA	NA	NA	70	NM_134077	74213	Mm.474531	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0.090000	0.621891	
mm_20992.1	chr2	152332106	152332306	-	1	NA	NA	NA	219	NM_001083921	24105	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0.075000	0.656716	
mm_30272.1	chr3	146812796	146812996	-	1	NA	NA	NA	50	NM_011100	18749	Mm.16766	NM_011100	ENSMUSG00000005034	Prkacb	CbPKA|Pkacb	protein kinase, cAMP dependent, catalytic, beta	protein-coding	0.160000	0.786070	
mm_84196.1	chr9	60598836	60599036	-	1	NA	NA	NA	-53054	NR_040463	100504561	Mm.410770	NR_040463	ENSMUSG00000111761	9230112J17Rik	-	RIKEN cDNA 9230112J17 gene	ncRNA	0.005000	0.462687	
mm_117580.1	chr13	88821685	88821885	-	1	NA	NA	NA	313	NM_001037987	13612	Mm.125580	NM_010103	ENSMUSG00000034488	Edil3	Del-1|Del1	EGF-like repeats and discoidin I-like domains 3	protein-coding	0.055000	0.606965	
mm_162060.1	chrX	8986658	8986858	-	1	NA	NA	NA	-86	NM_001099326	100042782	Mm.388703	NM_001099326	ENSMUSG00000078206	Fthl17d	Fthl17L3|Gm14458|OTTMUSG00000016694	ferritin, heavy polypeptide-like 17, member D	protein-coding	0.025000	0.537313	
mm_71013.1	chr8	31187237	31187437	+	1	NA	NA	NA	6	NM_001286425	171167	Mm.334477	NM_134161	ENSMUSG00000046152	Fut10	fuc-TX|fut10A	fucosyltransferase 10	protein-coding	0.075000	0.587065	
mm_70674.1	chr8	14911623	14911823	+	1	NA	NA	NA	60	NM_001037736	234094	Mm.240298	NM_172751	ENSMUSG00000071176	Arhgef10	6430549H08Rik|mKIAA0294	Rho guanine nucleotide exchange factor (GEF) 10	protein-coding	0.140000	0.751244	
mm_121641.1	chr14	8378794	8378994	-	1	NA	NA	NA	-131	NM_146050	18300	Mm.25351	NM_146050	ENSMUSG00000021749	Oit1	2310076N21Rik|AV067083|EF-7|Fam3d	oncoprotein induced transcript 1	protein-coding	0.010000	0.517413	
mm_60225.1	chr7	43579629	43579829	+	1	NA	NA	NA	143	NM_172482	210105	Mm.234422	NM_172482	ENSMUSG00000030469	Zfp719	8030458J18|9430094P17Rik|C630016O21Rik|mszf6	zinc finger protein 719	protein-coding	0.055000	0.572139	
mm_102961.1	chr11	69665261	69665461	-	1	NA	NA	NA	809	NM_001291058	12514	Mm.15819	NM_009853	ENSMUSG00000018774	Cd68	Lamp4|Scard1|gp110	CD68 antigen	protein-coding	0.010000	0.502488	
mm_44592.1	chr5	24995654	24995854	-	1	NA	NA	NA	-1	NM_001310480	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.025000	0.527363	
mm_98186.1	chr11	87793377	87793577	+	1	NA	NA	NA	-307	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.005000	0.502488	
mm_7377.1	chr1	107052238	107052438	-	1	NA	NA	NA	-35	NM_009126	20248	Mm.482944	NM_009126	ENSMUSG00000044594	Serpinb3a	1110001H02Rik|1110013A16Rik|Scca2|Serpinb4|Sqn5	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 3A	protein-coding	0.005000	0.417910	
mm_23623.1	chr3	65958221	65958421	+	1	NA	NA	NA	-96	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.125000	0.726368	
mm_37903.1	chr4	132732436	132732636	-	1	NA	NA	NA	10	NM_201368	381560	Mm.44558	NM_201368	ENSMUSG00000037752	Xkr8	4931440N07Rik|AI597014|Gm1031|XRG8|mXkr8	X-linked Kx blood group related 8	protein-coding	0.085000	0.726368	
mm_11698.1	chr2	35978752	35978952	+	1	NA	NA	NA	772	NM_029774	74410	Mm.21591	NM_028921	ENSMUSG00000026885	Ttll11	4932702F08Rik|4933424A20Rik|AU043211|D2Ertd624e	tubulin tyrosine ligase-like family, member 11	protein-coding	0.040000	0.477612	
mm_155340.1	chrX	68495308	68495508	+	1	NA	NA	NA	182991	NR_033481	100038638	Mm.368431	NR_033481	ENSMUSG00000096946	Fmr1os	Asfmr1|ENSMUSG00000073146|Gm10474	fragile X mental retardation syndrome 1, opposite strand	ncRNA	0.000000	0.437811	
mm_33476.1	chr4	130818635	130818835	+	1	NA	NA	NA	26198	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.035000	0.601990	
mm_161604.1	chr16	43761956	43762156	+	1	NA	NA	NA	-165	NM_007877	13490	Mm.439735	NM_007877	ENSMUSG00000022705	Drd3	D3R	dopamine receptor D3	protein-coding	0.005000	0.383085	
mm_97488.1	chr11	78325838	78326038	+	1	NA	NA	NA	1740	NM_009657	11676	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0.015000	0.562189	
mm_62441.1	chr7	101378097	101378297	+	1	NA	NA	NA	75	NM_001040112	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.010000	0.492537	
mm_76167.1	chr8	82380211	82380411	-	1	NA	NA	NA	22275	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.005000	0.358209	
mm_67818.1	chr7	98178086	98178286	-	1	NA	NA	NA	88	NM_007602	12337	Mm.326847	NM_007602	ENSMUSG00000035547	Capn5	nCL-3	calpain 5	protein-coding	0.070000	0.711443	
mm_24438.1	chr3	90589612	90589812	+	1	NA	NA	NA	-535	NM_001195760	628324	Mm.33816	NM_001195760	ENSMUSG00000094018	S100a2	CaN19|EG628324|S100L	S100 calcium binding protein A2	protein-coding	0.025000	0.522388	
mm_64704.1	chr7	4547430	4547630	-	1	NA	NA	NA	-963	NM_016908	53420	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	0.115000	0.641791	
mm_104373.1	chr11	94365323	94365523	-	1	NA	NA	NA	27553	NM_029600	76408	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.010000	0.537313	
mm_112774.1	chr13	19623237	19623437	+	1	NA	NA	NA	162	NM_016687	20379	Mm.42095	NM_016687	ENSMUSG00000021319	Sfrp4	-	secreted frizzled-related protein 4	protein-coding	0.030000	0.616915	
mm_98157.1	chr11	87617156	87617356	+	1	NA	NA	NA	92	NM_001045527	327992	Mm.390371	NM_001045527	ENSMUSG00000070345	Hsf5	Gm739|MLZ-220	heat shock transcription factor family member 5	protein-coding	0.100000	0.751244	
mm_33459.1	chr4	130792394	130792594	+	1	NA	NA	NA	-43	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.190000	0.835821	
mm_76895.1	chr8	105758514	105758714	-	1	NA	NA	NA	-7	NM_027469	70575	Mm.40954	NM_027469	ENSMUSG00000013150	Gfod2	5730466C23Rik	glucose-fructose oxidoreductase domain containing 2	protein-coding	0.110000	0.696517	
mm_49097.1	chr6	7844733	7844933	+	1	NA	NA	NA	-391	NM_052993	94192	Mm.102752	NM_052993	ENSMUSG00000042460	C1galt1	2210410E06Rik|AV284120|T-synthase	core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	protein-coding	0.185000	0.850746	
mm_61455.1	chr7	75586299	75586499	+	1	NA	NA	NA	130865	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.035000	0.577114	
mm_134658.1	chr16	22076016	22076216	-	1	NA	NA	NA	66632	NR_027488	75826	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.015000	0.567164	
mm_3974.1	chr1	164193353	164193553	+	1	NA	NA	NA	-41236	NR_037987	100503816	Mm.398579	NR_037987	ENSMUSG00000086593	Gm16548	-	predicted gene 16548	ncRNA	0.000000	0.432836	
mm_26325.1	chr3	142533382	142533582	+	1	NA	NA	NA	3146	NM_145545	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.005000	0.398010	
mm_93273.1	chr10	95825053	95825253	-	1	NA	NA	NA	-115510	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.015000	0.467662	-34(GCCTATAAAAAG,-,0.00)
mm_36259.1	chr4	63418606	63418806	-	1	NA	NA	NA	-15261	NM_001045514	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.020000	0.547264	
mm_102754.1	chr11	67298415	67298615	-	1	NA	NA	NA	21391	NM_177369	17885	Mm.340163	NM_177369	ENSMUSG00000055775	Myh8	4832426G23Rik|AI327267|MHCp|MyHC-pn|Myhs-p|Myhsp	myosin, heavy polypeptide 8, skeletal muscle, perinatal	protein-coding	0.065000	0.621891	
mm_76796.1	chr8	102786541	102786741	-	1	NA	NA	NA	-1530	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.050000	0.597015	
mm_172025.1	chr6	122770158	122770358	-	1	NA	NA	NA	-27513	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.020000	0.537313	
mm_51357.1	chr6	72606293	72606493	+	1	NA	NA	NA	7765	NM_026159	67442	Mm.305108	NM_026159	ENSMUSG00000056666	Retsat	0610039N19Rik|C80029|MMT-7|Ppsig	retinol saturase (all trans retinol 13,14 reductase)	protein-coding	0.015000	0.542289	
mm_163733.1	chr13	119679949	119680149	+	1	NA	NA	NA	7	NR_138420	73480	Mm.71100	NR_045296	ENSMUSG00000099872	1700074H08Rik	CH25-211A23.1	RIKEN cDNA 1700074H08 gene	ncRNA	0.010000	0.363184	
mm_90082.1	chr10	116581498	116581698	+	1	NA	NA	NA	-87	NM_001037846	72068	Mm.351553	NM_028082	ENSMUSG00000020166	Cnot2	2600016M12Rik|2810470K03Rik|AA537049|AA959607|AW557563|C79650	CCR4-NOT transcription complex, subunit 2	protein-coding	0.150000	0.711443	
mm_13450.1	chr2	105372892	105373092	+	1	NA	NA	NA	26327	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0.015000	0.522388	
mm_19854.1	chr2	113828659	113828859	-	1	NA	NA	NA	332	NM_009162	20394	Mm.4836	NM_009162	ENSMUSG00000023236	Scg5	7B2|AI325031|Sgne-1|Sgne1	secretogranin V	protein-coding	0.035000	0.502488	
mm_49666.1	chr6	31220348	31220548	+	1	NA	NA	NA	97	NR_040261	73652	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.065000	0.701493	
mm_112271.1	chr12	114196831	114197031	-	1	NA	NA	NA	272535	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.000000	0.442786	
mm_54987.1	chr6	48747441	48747641	-	1	NA	NA	NA	1344	NM_175035	317757	Mm.455917	NM_175035	ENSMUSG00000043505	Gimap5	D630024P16|E230026N22Rik	GTPase, IMAP family member 5	protein-coding	0.015000	0.472637	
mm_37896.1	chr4	132608205	132608405	-	1	NA	NA	NA	-30741	NM_210071	14050	Mm.227733	NM_010166	ENSMUSG00000028886	Eya3	AI844637	EYA transcriptional coactivator and phosphatase 3	protein-coding	0.015000	0.507463	
mm_154739.1	chrX	10254320	10254520	+	1	NA	NA	NA	2115	NM_008769	18416	Mm.2611	NM_008769	ENSMUSG00000031173	Otc	AI265390|Sf|spf	ornithine transcarbamylase	protein-coding	0.020000	0.398010	-39(TCCCATTAAAGC,-,0.00)
mm_143417.1	chr17	70840833	70841033	-	1	NA	NA	NA	5844	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.000000	0.388060	-33(TGCTATTAAAGG,-,0.00)
mm_128504.1	chr15	53068471	53068671	-	1	NA	NA	NA	277612	NM_010162	14042	Mm.309395	NM_010162	ENSMUSG00000061731	Ext1	AA409028	exostoses (multiple) 1	protein-coding	0.025000	0.442786	
mm_119968.1	chr14	55510512	55510712	+	1	NA	NA	NA	164	NM_001136057	12891	Mm.5249	NM_009947	ENSMUSG00000022212	Cpne6	AU067659|BB076446	copine VI	protein-coding	0.035000	0.681592	-21(CCCCATAAATAG,-,0.00),-19(CCATAAATAGCA,+,0.00)
mm_38368.1	chr4	138367859	138368059	-	1	NA	NA	NA	-4	NM_028176	72269	Mm.46182	NM_028176	ENSMUSG00000028755	Cda	2210401N16Rik	cytidine deaminase	protein-coding	0.070000	0.676617	
mm_56380.1	chr6	94283666	94283866	-	1	NA	NA	NA	151	NM_001286786	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.125000	0.696517	-71(CTGCTTAAAGGG,-,0.00),-69(GCTTAAAGGGGC,+,0.00)
mm_48972.1	chr6	4754038	4754238	+	1	NA	NA	NA	6832	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.030000	0.532338	
mm_155972.1	chrX	106125420	106125620	+	1	NA	NA	NA	-17755	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.010000	0.383085	
mm_72000.1	chr8	70659873	70660073	+	1	NA	NA	NA	-235	NM_023217	66522	Mm.154906	NM_023217	ENSMUSG00000056204	Pgpep1	2810003H13Rik|Gm19458|PAP-I|PGP|PGP-I|PGPI|Pcp	pyroglutamyl-peptidase I	protein-coding	0.030000	0.606965	
mm_85033.1	chr9	88480184	88480384	-	1	NA	NA	NA	2113	NM_019666	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.000000	0.388060	
mm_21752.1	chr2	164833359	164833559	-	1	NA	NA	NA	137	NM_001082974	415115	Mm.474586	NM_001082974	ENSMUSG00000039873	Neurl2	Neur2|Ozz|Ozz-E3	neuralized E3 ubiquitin protein ligase 2	protein-coding	0.055000	0.641791	
mm_116872.1	chr13	55019035	55019235	-	1	NA	NA	NA	1684	NM_001206390	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.000000	0.447761	
mm_110410.1	chr12	45099359	45099559	-	1	NA	NA	NA	-24976	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.000000	0.467662	
mm_122011.1	chr14	27237844	27238044	-	1	NA	NA	NA	-66	NM_027871	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.015000	0.537313	
mm_47934.1	chr5	135132365	135132565	-	1	NA	NA	NA	-17246	NM_013763	27368	Mm.36746	NM_013763	ENSMUSG00000005374	Tbl2	C76179|WS-bTRP	transducin (beta)-like 2	protein-coding	0.010000	0.587065	
mm_86449.1	chr10	4314518	4314718	+	1	NA	NA	NA	48289	NM_031185	83397	Mm.27481	NM_031185	ENSMUSG00000038587	Akap12	AI317366|SSeCKS|Srcs5|Tsga12	A kinase (PRKA) anchor protein (gravin) 12	protein-coding	0.005000	0.487562	
mm_169125.1	chr13	54189946	54190146	-	1	NA	NA	NA	-2083	NM_001010973	15466	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	-	histamine receptor H2	protein-coding	0.035000	0.482587	
mm_137468.1	chr17	26676288	26676488	+	1	NA	NA	NA	-8	NM_025272	11974	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.110000	0.661692	
mm_125587.1	chr15	59618600	59618800	+	1	NA	NA	NA	-29954	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.045000	0.557214	
mm_8068.1	chr1	135470671	135470871	-	1	NA	NA	NA	-16088	NR_049188	100885827		NR_049188	ENSMUSG00000093515	Mir1231	Gm23720|mir-1231|mmu-mir-1231	microRNA 1231	ncRNA	0.035000	0.606965	
mm_68848.1	chr7	126368478	126368678	-	1	NA	NA	NA	-533	NR_106025	102466797		NR_106025	ENSMUSG00000099017	Mir7058	Gm27766|mmu-mir-7058	microRNA 7058	ncRNA	0.020000	0.557214	
mm_98112.1	chr11	87109130	87109330	+	1	NA	NA	NA	-31	NM_025377	66140	Mm.45008	NM_025377	ENSMUSG00000020492	Ska2	1110001A07Rik|C78640|Fam33a	spindle and kinetochore associated complex subunit 2	protein-coding	0.060000	0.552239	
mm_165205.1	chr2	34773934	34774134	+	1	NA	NA	NA	1944	NM_022310	14828	Mm.330160	NM_022310	ENSMUSG00000026864	Hspa5	AL022860|AU019543|Bip|D2Wsu141e|D2Wsu17e|Grp78|Hsce70|SEZ-7|Sez7|baffled|mBiP	heat shock protein 5	protein-coding	0.010000	0.502488	
mm_33255.1	chr4	127168569	127168769	+	1	NA	NA	NA	-535	NM_198618	242667	Mm.331885	NM_198618	ENSMUSG00000042388	Dlgap3	BC058433|DAP-3|DAP3|Prpl8|Sapap3	discs, large (Drosophila) homolog-associated protein 3	protein-coding	0.045000	0.646766	
mm_163235.1	chr11	103963949	103964149	-	1	NA	NA	NA	-2676	NM_001304574	11841	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.000000	0.427861	
mm_117494.1	chr13	78198680	78198880	-	1	NA	NA	NA	93	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.125000	0.761194	
mm_11412.1	chr2	31572708	31572908	+	1	NA	NA	NA	157	NM_001290548	320267	Mm.207261	NM_001033389	ENSMUSG00000026843	Fubp3	A330051M14Rik|AV006371|FBP3|Marta2	far upstream element (FUSE) binding protein 3	protein-coding	0.090000	0.691542	
mm_94042.1	chr10	128176352	128176552	-	1	NA	NA	NA	116	NM_019711	56516	Mm.42247	NM_019711	ENSMUSG00000040043	Rbms2	2610315E04Rik|Scr3	RNA binding motif, single stranded interacting protein 2	protein-coding	0.010000	0.507463	
mm_107987.1	chr12	73123600	73123800	+	1	NA	NA	NA	-17	NM_008612	17420	Mm.246750	NM_008612	ENSMUSG00000021103	Mnat1	E130115E11Rik|MAT1|P36	menage a trois 1	protein-coding	0.055000	0.552239	
mm_118497.1	chr14	13453888	13454088	+	1	NA	NA	NA	30	NM_001163032	72003	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.015000	0.567164	
mm_172210.1	chr6	59199542	59199742	+	1	NA	NA	NA	-9228	NM_001081145	68140	Mm.25843	NM_001081145	ENSMUSG00000049232	Tigd2	3632410O17Rik	tigger transposable element derived 2	protein-coding	0.040000	0.537313	
mm_68686.1	chr7	119459173	119459373	-	1	NA	NA	NA	-1	NM_025989	67133	Mm.46403	NM_025989	ENSMUSG00000030954	Gp2	2310037I18Rik|AV060639	glycoprotein 2 (zymogen granule membrane)	protein-coding	0.005000	0.512438	
mm_149714.1	chr19	21653337	21653537	+	1	NA	NA	NA	128	NM_146096	226016	Mm.28796	NM_146096	ENSMUSG00000047368	Abhd17b	5730446C15Rik|Cgi67|Fam108b|Fam108b1	abhydrolase domain containing 17B	protein-coding	0.190000	0.800995	
mm_24645.1	chr3	94385581	94385781	+	1	NA	NA	NA	8249	NR_121656	19885	Mm.4372	NM_011281	ENSMUSG00000028150	Rorc	Nr1f3|RORgamma|TOR|Thor	RAR-related orphan receptor gamma	protein-coding	0.000000	0.457711	
mm_144382.1	chr18	20666446	20666646	+	1	NA	NA	NA	1296	NM_013697	22139	Mm.2108	NM_013697	ENSMUSG00000061808	Ttr	AA408768|AI787086|D17860|prealbumin	transthyretin	protein-coding	0.020000	0.537313	
mm_74778.1	chr8	21970345	21970545	-	1	NA	NA	NA	-151	NM_026459	67929	Mm.60688	NM_026459	ENSMUSG00000017049	Ccdc70	1700112P19Rik	coiled-coil domain containing 70	protein-coding	0.000000	0.472637	
mm_155999.1	chrX	106187058	106187258	+	1	NA	NA	NA	58	NM_008828	18655	Mm.316355	NM_008828	ENSMUSG00000062070	Pgk1	Pgk-1	phosphoglycerate kinase 1	protein-coding	0.095000	0.676617	
mm_39692.1	chr5	26904805	26905005	+	1	NA	NA	NA	127	NM_001198886	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.055000	0.601990	
mm_158213.1	chrX	105875409	105875609	-	1	NA	NA	NA	53863	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.010000	0.437811	
mm_153432.1	chr19	40953928	40954128	-	1	NA	NA	NA	40507	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.010000	0.527363	-41(AACTCTAAAAGA,-,0.00)
mm_36802.1	chr4	103173313	103173513	-	1	NA	NA	NA	41471	NM_177732	242585	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.000000	0.407960	
mm_103591.1	chr11	78245860	78246060	-	1	NA	NA	NA	214	NM_009143	20316	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	0.055000	0.522388	
mm_139302.1	chr17	48346412	48346612	+	1	NA	NA	NA	111	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.005000	0.562189	
mm_70212.1	chr7	144929910	144930110	-	1	NA	NA	NA	2125	NR_039539	100628615		NR_039539	ENSMUSG00000092633	Mir3962	mmu-mir-3962|mu-mir-3962	microRNA 3962	ncRNA	0.010000	0.452736	
mm_94386.1	chr11	5520880	5521080	+	1	NA	NA	NA	339	NM_001271730	22433	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0.140000	0.726368	
mm_127393.1	chr15	101128431	101128631	+	1	NA	NA	NA	9	NM_001277257	11482	Mm.279542	NM_009612	ENSMUSG00000000530	Acvrl1	AI115505|AI427544|Acvrlk1|Alk1	activin A receptor, type II-like 1	protein-coding	0.025000	0.522388	
mm_116273.1	chr13	34652999	34653199	-	1	NA	NA	NA	176	NR_105041	101056149	Mm.421309	NR_105041	ENSMUSG00000086786	Gm15908	OTTMUSG00000027716	predicted gene 15908	ncRNA	0.125000	0.741294	
mm_89217.1	chr10	86778957	86779157	+	1	NA	NA	NA	52	NM_175331	103466	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.130000	0.766169	
mm_128365.1	chr15	41869615	41869815	-	1	NA	NA	NA	5	NM_175456	223513	Mm.148913	NM_175456	ENSMUSG00000042895	Abra	C130068O12Rik|STARS	actin-binding Rho activating protein	protein-coding	0.020000	0.547264	
mm_121515.1	chr14	122011913	122012113	+	1	NA	NA	NA	-22661	NM_001037744	223262	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.015000	0.482587	
mm_128838.1	chr15	68363050	68363250	-	1	NA	NA	NA	-21861	NR_029718	387228		NR_029718	ENSMUSG00000065437	Mir30d	Mirn30d|mir-30d|mmu-mir-30d	microRNA 30d	ncRNA	0.175000	0.736318	
mm_5904.1	chr1	54926199	54926399	-	1	NA	NA	NA	88	NM_001081433	329154	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.125000	0.746269	-80(CTGTATAAAGGC,-,0.00)
mm_156939.1	chrX	169916055	169916255	+	1	NA	NA	NA	36536	NM_001290505	17318	Mm.34441	NM_010797	ENSMUSG00000035299	Mid1	61B3-R|DXHXS1141|Fxy|Trim18	midline 1	protein-coding	0.030000	0.512438	
mm_126549.1	chr15	82059039	82059239	+	1	NA	NA	NA	-12	NM_001166475	328573	Mm.399189	NM_001166475	ENSMUSG00000075524	4930407I10Rik	Gm747	RIKEN cDNA 4930407I10 gene	protein-coding	0.000000	0.517413	
mm_68034.1	chr7	101301605	101301805	-	1	NA	NA	NA	383	NM_001111111	73683	Mm.275744	NM_001111111	ENSMUSG00000047767	Atg16l2	2410118P20Rik	autophagy related 16-like 2 (S. cerevisiae)	protein-coding	0.050000	0.582090	
mm_136665.1	chr17	6106442	6106642	+	1	NA	NA	NA	-288	NM_001103181	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.075000	0.636816	
mm_19957.1	chr2	117342805	117343005	-	1	NA	NA	NA	-28	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.100000	0.651741	
mm_83848.1	chr9	54501565	54501765	-	1	NA	NA	NA	-39	NM_172771	235380	Mm.93636	NM_172771	ENSMUSG00000041268	Dmxl2	6330586A12|6430411K14Rik|E130119P06Rik|mKIAA0856	Dmx-like 2	protein-coding	0.200000	0.820896	
mm_71939.1	chr8	70329818	70330018	+	1	NA	NA	NA	153	NM_008107	14559	Mm.258280	NM_008107	ENSMUSG00000087408	Gdf1	AI385651|Gdf-1	growth differentiation factor 1	protein-coding	0.035000	0.641791	
mm_72883.1	chr8	89012536	89012736	+	1	NA	NA	NA	-12099	NR_106190	102465899		NR_106190	ENSMUSG00000099078	Mir8110	Gm27571|mmu-mir-8110	microRNA 8110	ncRNA	0.000000	0.437811	
mm_119103.1	chr14	30951341	30951541	+	1	NA	NA	NA	64	NM_011849	23955	Mm.251494	NM_011849	ENSMUSG00000021918	Nek4	Stk2	NIMA (never in mitosis gene a)-related expressed kinase 4	protein-coding	0.110000	0.661692	
mm_85195.1	chr9	96731267	96731467	-	1	NA	NA	NA	308	NM_175537	245007	Mm.485954	NM_175537	ENSMUSG00000040433	Zbtb38	A930014K01Rik|CIBZ	zinc finger and BTB domain containing 38	protein-coding	0.055000	0.477612	
mm_84988.1	chr9	86571005	86571205	-	1	NA	NA	NA	737	NM_001163746	109785	Mm.390201	NM_028352	ENSMUSG00000056131	Pgm3	2810473H05Rik|Agm1|BB187688|C77933|PAGM|Pgm-3	phosphoglucomutase 3	protein-coding	0.025000	0.502488	
mm_110932.1	chr12	76370250	76370450	-	1	NA	NA	NA	84	NM_178744	268564	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.110000	0.746269	
mm_39528.1	chr5	21278276	21278476	+	1	NA	NA	NA	92109	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.010000	0.388060	
mm_130999.1	chr15	103448383	103448583	-	1	NA	NA	NA	-24	NM_177631	223927	Mm.243718	NM_177631	ENSMUSG00000053508	BC048502	-	cDNA sequence BC048502	protein-coding	0.015000	0.477612	
mm_151802.1	chr19	5424734	5424934	-	1	NA	NA	NA	145	NM_024176	66556	Mm.275446	NM_024176	ENSMUSG00000024914	Drap1	2310074H19Rik|NC2-alpha	Dr1 associated protein 1 (negative cofactor 2 alpha)	protein-coding	0.120000	0.766169	
mm_76225.1	chr8	83572967	83573167	-	1	NA	NA	NA	6309	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.045000	0.597015	-12(TCATTTATGGCC,+,0.00)
mm_152796.1	chr19	21630638	21630838	-	1	NA	NA	NA	22053	NM_025423	66206	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0.025000	0.477612	
mm_46853.1	chr5	113650475	113650675	-	1	NA	NA	NA	-185	NM_008153	14747	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.045000	0.681592	
mm_76323.1	chr8	84705032	84705232	-	1	NA	NA	NA	3675	NM_008535	17095	Mm.4925	NM_008535	ENSMUSG00000034041	Lyl1	Lyl-1|bHLHa18	lymphoblastomic leukemia 1	protein-coding	0.065000	0.552239	
mm_8269.1	chr1	139436799	139436999	-	1	NA	NA	NA	14516	NM_172643	226470	Mm.119711	NM_172643	ENSMUSG00000033964	Zbtb41	8430415N23Rik|9430031N01|9830132G07Rik|AI316857	zinc finger and BTB domain containing 41	protein-coding	0.020000	0.407960	
mm_95084.1	chr11	33203636	33203836	+	1	NA	NA	NA	-148	NM_019916	27140	Mm.25362	NM_019916	ENSMUSG00000040610	Tlx3	Hox11l2|Rnx|Tlx1l2	T cell leukemia, homeobox 3	protein-coding	0.055000	0.487562	
mm_55201.1	chr6	52204339	52204539	-	1	NA	NA	NA	148	NM_010453	15402	Mm.173	NM_010453	ENSMUSG00000038253	Hoxa5	Hox-1.3	homeobox A5	protein-coding	0.050000	0.447761	
mm_18359.1	chr2	58566927	58567127	-	1	NA	NA	NA	-199	NM_001110204	11477	Mm.689	NM_007394	ENSMUSG00000026836	Acvr1	ALK2|ActR-I|ActRIA|Acvr|Acvrlk2|Alk-2|Alk8|D330013D15Rik|SKR1|Tsk7L	activin A receptor, type 1	protein-coding	0.175000	0.855721	
mm_93546.1	chr10	116113777	116113977	-	1	NA	NA	NA	40	NM_001161855	619332	Mm.391427	NM_001033821	ENSMUSG00000074734	4933416C03Rik	-	RIKEN cDNA 4933416C03 gene	protein-coding	0.065000	0.686567	
mm_82494.1	chr9	18674665	18674865	-	1	NA	NA	NA	80868	NM_146606	18322	Mm.246530	NM_146606	ENSMUSG00000054141	Olfr24	MOR132-1|MTPCR51	olfactory receptor 24	protein-coding	0.000000	0.447761	
mm_94383.1	chr11	5505873	5506073	+	1	NA	NA	NA	-14668	NM_013842	22433	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0.025000	0.527363	-24(ACCCTTAAAAAC,-,0.00),-22(CCTTAAAAACTA,+,0.00)
mm_76785.1	chr8	99446652	99446852	-	1	NA	NA	NA	30078	NR_132435	234624	Mm.124595	NM_175479	ENSMUSG00000052479	A330008L17Rik	-	RIKEN cDNA A330008L17 gene	ncRNA	0.000000	0.477612	-34(TGCTATATAAAG,-,0.00)
mm_47251.1	chr5	121593478	121593678	-	1	NA	NA	NA	246	NM_009656	11669	Mm.284446	NM_009656	ENSMUSG00000029455	Aldh2	AHD-M1|ALDH-E2|ALDHI|Ahd-5|Ahd5	aldehyde dehydrogenase 2, mitochondrial	protein-coding	0.090000	0.651741	
mm_69130.1	chr7	127026712	127026912	-	1	NA	NA	NA	-333	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.135000	0.825871	
mm_2780.1	chr1	130826666	130826866	+	1	NA	NA	NA	82	NM_011082	18703	Mm.276414	NM_011082	ENSMUSG00000026417	Pigr	-	polymeric immunoglobulin receptor	protein-coding	0.015000	0.512438	
mm_167125.1	chr7	123543393	123543593	+	1	NA	NA	NA	-43044	NM_001081329	210162	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	0.000000	0.402985	
mm_41418.1	chr5	90876223	90876423	+	1	NA	NA	NA	-14922	NM_008176	14825	Mm.21013	NM_008176	ENSMUSG00000029380	Cxcl1	Fsp|Gro1|KC|Mgsa|N51|Scyb1|gro	chemokine (C-X-C motif) ligand 1	protein-coding	0.005000	0.447761	-27(CCTTTAAAATAC,+,0.00)
mm_75404.1	chr8	46209149	46209349	-	1	NA	NA	NA	1760	NM_007450	11739	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	0.040000	0.587065	
mm_142086.1	chr17	35779013	35779213	-	1	NA	NA	NA	6663	NR_045459	74601	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	0.020000	0.542289	
mm_148358.1	chr18	84951407	84951607	-	1	NA	NA	NA	17	NM_025969	67105	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	tranlocase of inner mitochondrial membrane 21	protein-coding	0.035000	0.452736	
mm_32765.1	chr4	116691758	116691958	+	1	NA	NA	NA	-5836	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.020000	0.422886	
mm_76932.1	chr8	105937990	105938190	-	1	NA	NA	NA	302	NM_013640	19171	Mm.787	NM_013640	ENSMUSG00000031897	Psmb10	Mecl-1|Mecl1	proteasome (prosome, macropain) subunit, beta type 10	protein-coding	0.040000	0.562189	
mm_142671.1	chr17	47730024	47730224	-	1	NA	NA	NA	3282	NM_025973	109820	Mm.22957	NM_025973	ENSMUSG00000023987	Pgc	2210410L06Rik|Upg-1|Upg1	progastricsin (pepsinogen C)	protein-coding	0.030000	0.577114	
mm_69320.1	chr7	128461455	128461655	-	1	NA	NA	NA	-42	NM_009383	21843	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.060000	0.582090	
mm_27065.1	chr3	27711197	27711397	-	1	NA	NA	NA	-858	NM_173182	72007	Mm.38832	NM_173182	ENSMUSG00000039286	Fndc3b	1600019O04Rik|AW550168|Fad104|mKIAA4164	fibronectin type III domain containing 3B	protein-coding	0.105000	0.661692	
mm_18079.1	chr2	43738578	43738778	-	1	NA	NA	NA	-10146	NM_001301832	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.010000	0.407960	
mm_168362.1	chr11	16025866	16026066	-	1	NA	NA	NA	-231758	NM_001290539	211739	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding	0.030000	0.497512	-78(GTCCTTAAAGAG,-,0.00),-76(CCTTAAAGAGAG,+,0.00),-18(GTCCTTAAAGAG,-,0.00),-16(CCTTAAAGAGGA,+,0.00)
mm_137477.1	chr17	26850577	26850777	+	1	NA	NA	NA	-9112	NM_008700	18091	Mm.41974	NM_008700	ENSMUSG00000015579	Nkx2-5	Csx|Nkx-2.5|Nkx2.5|tinman	NK2 homeobox 5	protein-coding	0.085000	0.601990	
mm_154468.1	chrM	3603	3803	-	1	NA	NA	NA	NA	NA									0.005000	0.318408	
mm_53783.1	chr6	146577515	146577715	+	1	NA	NA	NA	220	NM_138757	71177	Mm.271774	NM_138757	ENSMUSG00000040250	Asun	4933424B01Rik|Spata30	asunder, spermatogenesis regulator	protein-coding	0.060000	0.577114	
mm_169947.1	chr16	71276334	71276534	+	1	NA	NA	NA	26530	NR_040576	78221	Mm.399298	NR_040576		4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA	0.040000	0.527363	
mm_87820.1	chr10	60346551	60346751	+	1	NA	NA	NA	-200	NM_001159572	74048	Mm.273584	NM_028732	ENSMUSG00000020101	Vsir	4632428N05Rik|Dies1|PD-1H|VISTA	V-set immunoregulatory receptor	protein-coding	0.030000	0.547264	70(ATCTCTAAAAAG,-,0.00)
mm_127352.1	chr15	100619734	100619934	+	1	NA	NA	NA	4172	NM_011873	23994	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0.000000	0.363184	
mm_35731.1	chr4	45011860	45012060	-	1	NA	NA	NA	452	NM_001163284	230119	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0.080000	0.686567	
mm_72058.1	chr8	71371729	71371929	+	1	NA	NA	NA	531	NM_001293800	77090	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	0.100000	0.726368	
mm_77684.1	chr8	125851032	125851232	-	1	NA	NA	NA	47185	NM_175561	270109	Mm.145535	NM_175561	ENSMUSG00000060212	Pcnx2	A830048P05|AU067631|E330039K12Rik|Pcnxl2|mKIAA0435	pecanex homolog 2	protein-coding	0.035000	0.517413	
mm_5474.1	chr1	36593227	36593427	-	1	NA	NA	NA	5	NM_027957	381337	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0.000000	0.497512	
mm_30885.1	chr4	32249303	32249503	+	1	NA	NA	NA	-168032	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.020000	0.358209	
mm_102405.1	chr11	59163611	59163811	-	1	NA	NA	NA	34	NM_001270791	216792	Mm.266175	NM_173785	ENSMUSG00000049287	Iba57	4930543L23Rik|A230051G13Rik|C1orf69	IBA57 homolog, iron-sulfur cluster assembly	protein-coding	0.135000	0.766169	
mm_97115.1	chr11	74770794	74770994	+	1	NA	NA	NA	31	NM_026197	67493	Mm.45748	NM_026197	ENSMUSG00000010554	Mettl16	2610100D03Rik|2810013M15Rik|A830095F14Rik|AI846133|Mett10d	methyltransferase like 16	protein-coding	0.085000	0.601990	
mm_101198.1	chr11	19016599	19016799	-	1	NA	NA	NA	2270	NM_001193271	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.030000	0.492537	
mm_47210.1	chr5	121008950	121009150	-	1	NA	NA	NA	488	NM_011286	19894	Mm.181166	NM_011286	ENSMUSG00000029608	Rph3a	2900002P20Rik|AU022689|AW108370	rabphilin 3A	protein-coding	0.035000	0.517413	
mm_8794.1	chr1	161788368	161788568	-	1	NA	NA	NA	27	NM_001205243	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.020000	0.462687	66(AACTTTATAAAG,-,0.00),68(CTTTATAAAGAA,+,0.00)
mm_29385.1	chr3	108858519	108858719	-	1	NA	NA	NA	-18117	NM_011504	20912	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.010000	0.442786	
mm_9044.1	chr1	167283811	167284011	-	1	NA	NA	NA	1216	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.075000	0.661692	
mm_86493.1	chr10	5593739	5593939	+	1	NA	NA	NA	111	NM_026793	68632	Mm.338242	NM_026793	ENSMUSG00000046916	Myct1	1110020B04Rik|AI225941|AI642973|Mtmc1	myc target 1	protein-coding	0.015000	0.422886	
mm_59700.1	chr7	28692725	28692925	+	1	NA	NA	NA	-24	NM_207238	233040	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	0.035000	0.532338	
mm_41191.1	chr5	88327828	88328028	+	1	NA	NA	NA	10616	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.010000	0.388060	
mm_45916.1	chr5	89439527	89439727	-	1	NA	NA	NA	18271	NM_008096	14473	Mm.196595	NM_008096	ENSMUSG00000035540	Gc	DBP|VDB	group specific component	protein-coding	0.005000	0.412935	
mm_121809.1	chr14	20378763	20378963	-	1	NA	NA	NA	10047	NM_134081	108671	Mm.2871	NM_134081	ENSMUSG00000021811	Dnajc9	5330419I01Rik|AU020082	DnaJ heat shock protein family (Hsp40) member C9	protein-coding	0.020000	0.522388	
mm_78291.1	chr9	22239712	22239912	+	1	NA	NA	NA	14100	NM_001164624	235047	Mm.290849	NM_172763	ENSMUSG00000057982	Zfp809	BB114266|C330026E23	zinc finger protein 809	protein-coding	0.015000	0.522388	
mm_4861.1	chr1	187662025	187662225	+	1	NA	NA	NA	53119	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.030000	0.601990	
mm_88887.1	chr10	81136257	81136457	+	1	NA	NA	NA	86	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.125000	0.776119	
mm_173331.1	chrY	90784759	90784959	+	1	NA	NA	NA	-583	NR_137282	170942	Mm.76062	NM_133362	ENSMUSG00000096768	Erdr1	edr	erythroid differentiation regulator 1	protein-coding	0.065000	0.606965	
mm_126492.1	chr15	81627209	81627409	+	1	NA	NA	NA	-36580	NM_001289712	214669	Mm.280768	NM_145993	ENSMUSG00000022394	L3mbtl2	4732493N06Rik|M4mbt	l(3)mbt-like 2 (Drosophila)	protein-coding	0.005000	0.547264	
mm_117404.1	chr13	73847511	73847711	-	1	NA	NA	NA	20	NM_028186	72293	Mm.45506	NM_028186	ENSMUSG00000021567	Nkd2	2210403L10Rik|AW212591|mNkd2	naked cuticle 2 homolog (Drosophila)	protein-coding	0.135000	0.731343	
mm_162047.1	chrX	4291122	4291322	-	1	NA	NA	NA	23	NM_001085553	668963	Mm.457966	NM_001085553	ENSMUSG00000094596	Btbd35f20	ENSMUSG00000078215|Gm10921|OTTMUSG00000016420	BTB domain containing 35, family member 20	protein-coding	0.010000	0.492537	
mm_31822.1	chr4	66844384	66844584	+	1	NA	NA	NA	16933	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.010000	0.348259	
mm_44456.1	chr5	22344576	22344776	-	1	NA	NA	NA	29	NM_011261	19699	Mm.425236	NM_011261	ENSMUSG00000042453	Reln	reeler|rl	reelin	protein-coding	0.175000	0.786070	-63(GGCTTTAAGAAG,-,0.00)
mm_77731.1	chr8	126872591	126872791	-	1	NA	NA	NA	73230	NM_024214	67952	Mm.6932	NM_024214	ENSMUSG00000093904	Tomm20	1810060K07Rik|BB284719|Gm19268|MAS20|MOM19|TOM20|mKIAA0016	translocase of outer mitochondrial membrane 20 homolog (yeast)	protein-coding	0.010000	0.567164	
mm_149649.1	chr19	18631845	18632045	+	1	NA	NA	NA	-71	NM_145497	225994	Mm.211595	NM_145497	ENSMUSG00000037847	Nmrk1	AA408380|D630020N23Rik|Nrk1	nicotinamide riboside kinase 1	protein-coding	0.070000	0.656716	
mm_64676.1	chr7	4501574	4501774	-	1	NA	NA	NA	6	NM_029834	232807	Mm.360391	NM_029834	ENSMUSG00000019254	Ppp1r12c	2410197A17Rik|AI839747|B430101M08|Mbs85	protein phosphatase 1, regulatory (inhibitor) subunit 12C	protein-coding	0.165000	0.751244	
mm_101059.1	chr11	9039493	9039693	-	1	NA	NA	NA	-2	NM_001290519	194974	Mm.79210	NM_177576	ENSMUSG00000040985	Sun3	Sunc1	Sad1 and UNC84 domain containing 3	protein-coding	0.005000	0.388060	
mm_15143.1	chr2	153974768	153974968	+	1	NA	NA	NA	-77	NM_001080811	545477	Mm.379973	NM_001080811	ENSMUSG00000078998	Bpifa6	EG545477|Gm5840|Splunc6	BPI fold containing family A, member 6	protein-coding	0.010000	0.522388	
mm_111449.1	chr12	98269623	98269823	-	1	NA	NA	NA	1088	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.010000	0.507463	
mm_50369.1	chr6	48676075	48676275	+	1	NA	NA	NA	40	NM_174960	317758	Mm.116971	NM_174960	ENSMUSG00000051124	Gimap9	A630002K24|BB145400	GTPase, IMAP family member 9	protein-coding	0.010000	0.512438	
mm_50066.1	chr6	41215960	41216160	+	1	NA	NA	NA	-86212	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.010000	0.482587	
mm_155183.1	chrX	56136465	56136665	+	1	NA	NA	NA	-7	NM_027510	70691	Mm.335676	NM_027510	ENSMUSG00000031125	3830403N18Rik	Xlrl	RIKEN cDNA 3830403N18 gene	protein-coding	0.035000	0.562189	
mm_61864.1	chr7	88430245	88430445	+	1	NA	NA	NA	72	NM_028238	72433	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	0.060000	0.641791	
mm_14440.1	chr2	130906381	130906581	+	1	NA	NA	NA	-14	NM_009730	11990	Mm.119936	NM_009730	ENSMUSG00000027312	Atrn	AW558010|Mgca|mg	attractin	protein-coding	0.130000	0.776119	
mm_118927.1	chr14	27038902	27039102	+	1	NA	NA	NA	1	NM_134437	171463	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	0.100000	0.681592	
mm_64789.1	chr7	6168497	6168697	-	1	NA	NA	NA	-3916	NM_028316	72667	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0.015000	0.442786	
mm_151322.1	chr19	55892832	55893032	+	1	NA	NA	NA	-2389	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.005000	0.368159	
mm_74090.1	chr8	122564837	122565037	+	1	NA	NA	NA	-3078	NM_026014	67177	Mm.21873	NM_026014	ENSMUSG00000006585	Cdt1	2610318F11Rik|AW545653|C76791|Ris2	chromatin licensing and DNA replication factor 1	protein-coding	0.040000	0.527363	
mm_135976.1	chr16	75047674	75047874	-	1	NA	NA	NA	538287	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.000000	0.363184	
mm_120453.1	chr14	65969626	65969826	+	1	NA	NA	NA	1243	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.020000	0.567164	
mm_109820.1	chr12	3855961	3856161	-	1	NA	NA	NA	6183	NR_045884	100038522	Mm.417270	NR_045884	ENSMUSG00000073242	Dnmt3aos	ENSMUSG00000073242|Gm10485	DNA methyltransferase 3A, opposite strand	ncRNA	0.000000	0.592040	
mm_121666.1	chr14	12345760	12345960	-	1	NA	NA	NA	5	NM_080433	54713	Mm.34644	NM_080433	ENSMUSG00000021743	Fezf2	AI451466|AI852056|Fez|Fezl|Zfp312	Fez family zinc finger 2	protein-coding	0.090000	0.656716	
mm_74068.1	chr8	122431598	122431798	+	1	NA	NA	NA	1242	NM_001301284	13057	Mm.271671	NM_007806	ENSMUSG00000006519	Cyba	b558|nmf333|p22-phox|p22phox	cytochrome b-245, alpha polypeptide	protein-coding	0.025000	0.512438	
mm_152063.1	chr19	6532031	6532231	-	1	NA	NA	NA	10939	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.025000	0.611940	
mm_154624.1	chrX	7728405	7728605	+	1	NA	NA	NA	-66	NM_138602	54637	Mm.28850	NM_138602	ENSMUSG00000031149	Praf2	AA986329|C78013|DXImx39e|JM4|Sfc20	PRA1 domain family 2	protein-coding	0.060000	0.577114	
mm_167474.1	chr8	127844501	127844701	+	1	NA	NA	NA	433624	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.005000	0.333333	
mm_151635.1	chr19	3931714	3931914	-	1	NA	NA	NA	-2098	NM_026316	67689	Mm.109341	NM_026316	ENSMUSG00000024885	Aldh3b1	1700001N19Rik|ALDH4|ALDH7	aldehyde dehydrogenase 3 family, member B1	protein-coding	0.015000	0.472637	
mm_61430.1	chr7	73740326	73740526	+	1	NA	NA	NA	119	NM_001162532	100038347	Mm.425464	NM_001162532	ENSMUSG00000078670	Fam174b	-	family with sequence similarity 174, member B	protein-coding	0.115000	0.746269	
mm_170843.1	chr2	177398260	177398460	-	1	NA	NA	NA	-66382	NM_001177568	628308	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420|OTTMUSG00000016588	zinc finger protein 970	protein-coding	0.010000	0.497512	
mm_91424.1	chr10	32889884	32890084	-	1	NA	NA	NA	-69	NM_001025286	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding	0.135000	0.761194	
mm_11291.1	chr2	30080353	30080553	+	1	NA	NA	NA	1687	NM_153805	263803	Mm.233843	NM_153805	ENSMUSG00000026785	Pkn3	AW209115|BC034126	protein kinase N3	protein-coding	0.015000	0.547264	
mm_98983.1	chr11	98741752	98741952	+	1	NA	NA	NA	67	NM_001313983	21833	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.145000	0.845771	
mm_85968.1	chr9	112156010	112156210	-	1	NA	NA	NA	29839	NM_001177618	74100	Mm.297444	NM_028755	ENSMUSG00000032503	Arpp21	0710001E13Rik|AI853636|ARPP-21|D9Bwg1012e|R3hdm3|Tarpp	cyclic AMP-regulated phosphoprotein, 21	protein-coding	0.005000	0.452736	
mm_116451.1	chr13	43171375	43171575	-	1	NA	NA	NA	26	NM_001252639	67046	Mm.269213	NM_025935	ENSMUSG00000021368	Tbc1d7	2610009C09Rik	TBC1 domain family, member 7	protein-coding	0.115000	0.676617	
mm_11446.1	chr2	32063238	32063438	+	1	NA	NA	NA	12392	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	0.005000	0.517413	
mm_29195.1	chr3	106760707	106760907	-	1	NA	NA	NA	29342	NM_007651	12508	Mm.316861	NM_007651	ENSMUSG00000040747	Cd53	AI323659|Ox-44|Tspan25	CD53 antigen	protein-coding	0.000000	0.437811	
mm_25575.1	chr3	116859463	116859663	+	1	NA	NA	NA	-4	NM_001113478	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.000000	0.467662	
mm_81932.1	chr9	120179836	120180036	+	1	NA	NA	NA	30194	NM_001039364	17433	Mm.486167	NM_008614	ENSMUSG00000032517	Mobp	AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645	myelin-associated oligodendrocytic basic protein	protein-coding	0.015000	0.378109	
mm_139529.1	chr17	56673180	56673380	+	1	NA	NA	NA	55	NM_027933	71810	Mm.29608	NM_027933	ENSMUSG00000002372	Ranbp3	2610024N24Rik|AA408221	RAN binding protein 3	protein-coding	0.105000	0.706468	
mm_172728.1	chr8	7542120	7542320	+	1	NA	NA	NA	1118553	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.055000	0.567164	
mm_107139.1	chr12	21374155	21374355	+	1	NA	NA	NA	-623	NM_009615	11491	Mm.27681	NM_009615	ENSMUSG00000052593	Adam17	CD156b|Tace	a disintegrin and metallopeptidase domain 17	protein-coding	0.025000	0.402985	
mm_75188.1	chr8	38111072	38111272	-	1	NA	NA	NA	141030	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	0.000000	0.348259	
mm_90519.1	chr10	128058900	128059100	+	1	NA	NA	NA	18	NM_019766	56351	Mm.305816	NM_019766	ENSMUSG00000071072	Ptges3	5730442A20Rik|Ptges|Tebp|cPGES|p23|sid3177	prostaglandin E synthase 3 (cytosolic)	protein-coding	0.135000	0.691542	
mm_56274.1	chr6	91110255	91110455	-	1	NA	NA	NA	6471	NM_018815	54563	Mm.28162	NM_018815	ENSMUSG00000030091	Nup210	9830001L10|AI836801|Pom210|gp190|gp210	nucleoporin 210	protein-coding	0.010000	0.422886	
mm_133496.1	chr16	90385939	90386139	+	1	NA	NA	NA	-358	NM_015755	26559	Mm.125874	NM_015755	ENSMUSG00000053414	Hunk	Bstk1|Mak-v	hormonally upregulated Neu-associated kinase	protein-coding	0.115000	0.701493	
mm_106858.1	chr12	8009150	8009350	+	1	NA	NA	NA	31573	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.442786	-24(GAGTATAAAAGT,-,0.00)
mm_152275.1	chr19	8819674	8819874	-	1	NA	NA	NA	373	NM_001081196	68693	Mm.476519	NM_001081196	ENSMUSG00000071659	Hnrnpul2	1110031M08Rik|AI465155|Hnrpul2	heterogeneous nuclear ribonucleoprotein U-like 2	protein-coding	0.080000	0.562189	
mm_20248.1	chr2	126499685	126499885	-	1	NA	NA	NA	-8232	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	A530043E15|Im	ATPase, class I, type 8B, member 4	protein-coding	0.035000	0.457711	
mm_171990.1	chr5	96374294	96374494	+	1	NA	NA	NA	439	NM_175473	231470	Mm.291120	NM_175473	ENSMUSG00000034687	Fras1	E130113P14Rik|bl|mKIAA1500	Fraser extracellular matrix complex subunit 1	protein-coding	0.100000	0.681592	
mm_85232.1	chr9	98033017	98033217	-	1	NA	NA	NA	50	NM_022319	64085	Mm.440903	NM_022319	ENSMUSG00000032452	Clstn2	2900042C18Rik|AI448973|CSTN2|Cs2|Cst-2|mKIAA4134	calsyntenin 2	protein-coding	0.160000	0.776119	
mm_80607.1	chr9	86743548	86743748	+	1	NA	NA	NA	15	NM_178738	244954	Mm.257629	NM_178738	ENSMUSG00000033491	Prss35	6030424L22Rik|P3D9	protease, serine 35	protein-coding	0.040000	0.646766	
mm_113147.1	chr13	24729543	24729743	+	1	NA	NA	NA	32294	NM_020567	57441	Mm.12239	NM_020567	ENSMUSG00000006715	Gmnn	AW546347|Gem	geminin	protein-coding	0.005000	0.407960	-6(TTTTTTAAAGAG,+,0.00),78(CCTTTTAAACAT,+,0.00)
mm_92881.1	chr10	82690482	82690682	-	1	NA	NA	NA	68	NM_029102	74782	Mm.191281	NM_029102	ENSMUSG00000020251	Glt8d2	1110021D20Rik	glycosyltransferase 8 domain containing 2	protein-coding	0.040000	0.577114	
mm_28503.1	chr3	92501663	92501863	-	1	NA	NA	NA	-1270	NM_173070	229562	Mm.246590	NM_173070	ENSMUSG00000045566	Sprr4	-	small proline-rich protein 4	protein-coding	0.010000	0.537313	-34(GCCCTTATAAGG,-,0.00),-32(CCTTATAAGGGT,+,0.00)
mm_54364.1	chr6	31126239	31126439	-	1	NA	NA	NA	-63246	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.005000	0.407960	
mm_129421.1	chr15	78405771	78405971	-	1	NA	NA	NA	-12	NM_009437	22117	Mm.15312	NM_009437	ENSMUSG00000044986	Tst	Rhodanese	thiosulfate sulfurtransferase, mitochondrial	protein-coding	0.060000	0.606965	
mm_118715.1	chr14	22195773	22195973	+	1	NA	NA	NA	176161	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.472637	
mm_161373.1	chr14	67233413	67233613	+	1	NA	NA	NA	221	NM_001276387	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.060000	0.552239	
mm_119659.1	chr14	52136469	52136669	+	1	NA	NA	NA	25666	NM_023879	77945	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	0.015000	0.427861	
mm_165697.1	chr3	93504919	93505119	+	1	NA	NA	NA	-15477	NM_016740	20195	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0.010000	0.432836	
mm_17607.1	chr2	30919566	30919766	-	1	NA	NA	NA	-16369	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.010000	0.378109	
mm_82853.1	chr9	31280068	31280268	-	1	NA	NA	NA	8767	NM_001101597	638580	Mm.373655	NM_001101597		Gm7244	EG638580	predicted gene 7244	protein-coding	0.050000	0.577114	
mm_149789.1	chr19	23140926	23141126	+	1	NA	NA	NA	-200	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.125000	0.681592	-33(CCTTTTAAATGT,+,0.00)
mm_9034.1	chr1	167226266	167226466	-	1	NA	NA	NA	58761	NM_030724	80914	Mm.280895	NM_030724	ENSMUSG00000026558	Uck2	AA407809|AI481316|AU018180|AU020720|TSA903|UK|UMK|Umpk	uridine-cytidine kinase 2	protein-coding	0.050000	0.577114	
mm_101591.1	chr11	34681986	34682186	-	1	NA	NA	NA	101819	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.020000	0.333333	
mm_30552.1	chr4	3693950	3694150	+	1	NA	NA	NA	15929	NM_010747	17096	Mm.317331	NM_010747	ENSMUSG00000042228	Lyn	AA407514|Hck-2|p53Lyn|p56Lyn	LYN proto-oncogene, Src family tyrosine kinase	protein-coding	0.000000	0.472637	
mm_126154.1	chr15	78409668	78409868	+	1	NA	NA	NA	2664	NM_138670	246221	Mm.294215	NM_138670	ENSMUSG00000071711	Mpst	Mst	mercaptopyruvate sulfurtransferase	protein-coding	0.030000	0.522388	
mm_20593.1	chr2	131174672	131174872	-	1	NA	NA	NA	38	NM_027641	70997	Mm.252722	NM_027641	ENSMUSG00000027329	Spef1	4931426K16Rik|Clamp	sperm flagellar 1	protein-coding	0.055000	0.532338	
mm_99621.1	chr11	104637257	104637457	+	1	NA	NA	NA	29357	NM_016780	16416	Mm.87150	NM_016780	ENSMUSG00000020689	Itgb3	CD61|GP3A|INGRB3	integrin beta 3	protein-coding	0.015000	0.472637	
mm_157906.1	chrX	78091241	78091441	-	1	NA	NA	NA	33	NM_008754	18249	Mm.430771	NM_008754	ENSMUSG00000067684	Obp1a	OBP-1a|OBP5	odorant binding protein IA	protein-coding	0.005000	0.393035	
mm_76059.1	chr8	77724355	77724555	-	1	NA	NA	NA	-3	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	0.050000	0.616915	
mm_166342.1	chr5	114897541	114897741	+	1	NA	NA	NA	707	NM_011854	23962	Mm.228363	NM_011854	ENSMUSG00000029561	Oasl2	M1204|Mmu-OASL|Oasl	2'-5' oligoadenylate synthetase-like 2	protein-coding	0.020000	0.552239	
mm_153813.1	chr19	46045406	46045606	-	1	NA	NA	NA	-295	NM_001113408	16825	Mm.327442	NM_010697	ENSMUSG00000025223	Ldb1	CLIM2|NLI	LIM domain binding 1	protein-coding	0.110000	0.721393	
mm_61026.1	chr7	49522555	49522755	+	1	NA	NA	NA	114180	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.035000	0.507463	46(GCACTTTAAAGG,-,0.00)
mm_18160.1	chr2	45098661	45098861	-	1	NA	NA	NA	11516	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.010000	0.368159	-86(CCCCATAAATGA,-,0.00),-71(CCATTTAAACAA,+,0.00)
mm_35389.1	chr4	33290013	33290213	-	1	NA	NA	NA	-20198	NM_011884	24018	Mm.240024	NM_011884	ENSMUSG00000028274	Rngtt	AU020997|HCE|MCE1	RNA guanylyltransferase and 5'-phosphatase	protein-coding	0.010000	0.432836	
mm_31104.1	chr4	41773603	41773803	+	1	NA	NA	NA	398	NM_001164045	20301	Mm.335946	NM_011336	ENSMUSG00000073888	Ccl27a	ALP|AW558992|CTACK|CTAK|Ccl27|ESkine|ILC|PESKY|Scya27|Scya27a	chemokine (C-C motif) ligand 27A	protein-coding	0.090000	0.701493	
mm_48626.1	chr5	145132855	145133055	-	1	NA	NA	NA	7134	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.040000	0.562189	
mm_81534.1	chr9	110117406	110117606	+	1	NA	NA	NA	110	NM_001252682	72831	Mm.276305	NM_133347	ENSMUSG00000032480	Dhx30	2810477H02Rik|C130058C04Rik|Ddx30|HELG|Ret-CoR	DEAH (Asp-Glu-Ala-His) box polypeptide 30	protein-coding	0.100000	0.696517	
mm_84793.1	chr9	77128721	77128921	-	1	NA	NA	NA	-83040	NM_012033	26944	Mm.23199	NM_012033	ENSMUSG00000032357	Tinag	AI452335|TIN-ag	tubulointerstitial nephritis antigen	protein-coding	0.000000	0.318408	
mm_132167.1	chr16	32277402	32277602	+	1	NA	NA	NA	41	NM_027355	70238	Mm.228263	NM_027355	ENSMUSG00000014074	Rnf168	3110001H15Rik	ring finger protein 168	protein-coding	0.110000	0.681592	
mm_44955.1	chr5	36695962	36696162	-	1	NA	NA	NA	-41	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.130000	0.741294	
mm_150177.1	chr19	32595691	32595891	+	1	NA	NA	NA	76	NM_001201470	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.075000	0.656716	-31(CTTTTTATACCT,+,0.00)
mm_34365.1	chr4	144892799	144892999	+	1	NA	NA	NA	72	NM_001172424	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.035000	0.497512	
mm_147942.1	chr18	66211879	66212079	-	1	NA	NA	NA	7354	NR_030467	751558		NR_030467	ENSMUSG00000076147	Mir694	Mirn694|mir-694|mmu-mir-694	microRNA 694	ncRNA	0.010000	0.308458	
mm_20870.1	chr2	148443436	148443636	-	1	NA	NA	NA	-1	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.030000	0.582090	
mm_154576.1	chrX	7566456	7566656	+	1	NA	NA	NA	-7044	NR_029473	78185	Mm.160055	NR_029473	ENSMUSG00000039545	Ppp1r3fos	4930524L23Rik	protein phosphatase 1, regulatory subunit 3F, opposite strand	ncRNA	0.030000	0.507463	
mm_105978.1	chr11	115590567	115590767	-	1	NA	NA	NA	13249	NM_001252067	260302	Mm.119479	NM_173048	ENSMUSG00000020740	Gga3	C230037M19Rik|mKIAA0154	golgi associated, gamma adaptin ear containing, ARF binding protein 3	protein-coding	0.000000	0.547264	
mm_137467.1	chr17	26663105	26663305	+	1	NA	NA	NA	-13191	NM_025272	11974	Mm.22602	NM_025272	ENSMUSG00000015575	Atp6v0e	Atp6k|Atp6v0e1|M9.2	ATPase, H+ transporting, lysosomal V0 subunit E	protein-coding	0.055000	0.567164	
mm_154462.1	chrM	3161	3361	-	1	NA	NA	NA	NA	NA									0.010000	0.388060	
mm_29302.1	chr3	107931654	107931854	-	1	NA	NA	NA	-9	NM_026672	68312	Mm.458189	NM_026672	ENSMUSG00000004035	Gstm7	0610005A07Rik|AI894236|Cd203c	glutathione S-transferase, mu 7	protein-coding	0.030000	0.587065	
mm_15209.1	chr2	154213938	154214138	+	1	NA	NA	NA	-9704	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.020000	0.582090	
mm_150655.1	chr19	41933402	41933602	+	1	NA	NA	NA	30	NM_023740	74168	Mm.20387	NM_023740	ENSMUSG00000025157	Zdhhc16	1500015N03Rik|Aph2	zinc finger, DHHC domain containing 16	protein-coding	0.080000	0.721393	
mm_75578.1	chr8	61381319	61381519	-	1	NA	NA	NA	-92547	NR_045475	69279	Mm.417857	NR_045475	ENSMUSG00000099419	1700001D01Rik	-	RIKEN cDNA 1700001D01 gene	ncRNA	0.040000	0.552239	
mm_126232.1	chr15	78947854	78948054	+	1	NA	NA	NA	230	NM_001039155	110253	Mm.123714	NM_138579	ENSMUSG00000033088	Triobp	AI428493|EST478828|Tara|mKIAA1662	TRIO and F-actin binding protein	protein-coding	0.055000	0.592040	
mm_147896.1	chr18	65307655	65307855	-	1	NA	NA	NA	58894	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.005000	0.437811	
mm_114803.1	chr13	91318721	91318921	+	1	NA	NA	NA	69264	NR_045161	320297	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0.000000	0.313433	
mm_168958.1	chr12	7859615	7859815	+	1	NA	NA	NA	-117962	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.090000	0.641791	
mm_37772.1	chr4	129819771	129819971	-	1	NA	NA	NA	-608	NM_008974	19244	Mm.193688	NM_008974	ENSMUSG00000028788	Ptp4a2	Prl-2	protein tyrosine phosphatase 4a2	protein-coding	0.100000	0.711443	
mm_63170.1	chr7	125182440	125182640	+	1	NA	NA	NA	167246	NR_045804	71208	Mm.159465	NM_172408	ENSMUSG00000045928	4933440M02Rik	-	RIKEN cDNA 4933440M02 gene	ncRNA	0.015000	0.517413	
mm_149448.1	chr19	11485825	11486025	+	1	NA	NA	NA	-6113	NM_001164202	666926	Mm.486382	NM_001164202	ENSMUSG00000058470	Gm8369	EG666926	predicted gene 8369	protein-coding	0.005000	0.422886	49(GGGTTTAAATAG,-,0.00)
mm_99650.1	chr11	105589732	105589932	+	1	NA	NA	NA	-154	NM_181071	77097	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.185000	0.855721	
mm_66100.1	chr7	31037786	31037986	-	1	NA	NA	NA	2431	NR_106017	102465635		NR_106017	ENSMUSG00000098783	Mir7050	Gm27578|mmu-mir-7050	microRNA 7050	ncRNA	0.010000	0.542289	
mm_69088.1	chr7	127017157	127017357	-	1	NA	NA	NA	95	NM_030240	67278	Mm.345385	NM_030240	ENSMUSG00000030680	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0.080000	0.582090	20(CGGTCTAAAAAG,-,0.00)
mm_129994.1	chr15	86185566	86185766	-	1	NA	NA	NA	475	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.165000	0.800995	
mm_22513.1	chr3	7618638	7618838	+	1	NA	NA	NA	-4978	NM_001313888	16196	Mm.3825	NM_008371	ENSMUSG00000040329	Il7	A630026I06Rik|Il-7|hlb368	interleukin 7	protein-coding	0.000000	0.298507	
mm_83241.1	chr9	42399660	42399860	-	1	NA	NA	NA	169	NM_009347	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.035000	0.432836	
mm_146745.1	chr18	15822485	15822685	-	1	NA	NA	NA	-104539	NM_199055	71367	Mm.329304	NM_199055	ENSMUSG00000047161	Chst9	5430438D01Rik	carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9	protein-coding	0.015000	0.432836	
mm_144025.1	chr17	90036631	90036831	-	1	NA	NA	NA	51637	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.030000	0.412935	
mm_146050.1	chr18	69593495	69593695	+	1	NA	NA	NA	247874	NM_001083967	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.050000	0.527363	
mm_46135.1	chr5	92675338	92675538	-	1	NA	NA	NA	-311	NM_177230	320696	Mm.209991	NM_177230	ENSMUSG00000050050	Ccdc158	4932413O14Rik	coiled-coil domain containing 158	protein-coding	0.070000	0.701493	
mm_58189.1	chr6	142989644	142989844	-	1	NA	NA	NA	-25292	NM_011374	20449	Mm.260838	NM_011374	ENSMUSG00000030283	St8sia1	9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1	protein-coding	0.030000	0.502488	
mm_137830.1	chr17	30684724	30684924	+	1	NA	NA	NA	57888	NM_013811	13417	Mm.426017	NM_013811	ENSMUSG00000033826	Dnah8	ATPase|Dnahc8|Hst6.7b|P1-Loop	dynein, axonemal, heavy chain 8	protein-coding	0.010000	0.522388	
mm_77407.1	chr8	120538557	120538757	-	1	NA	NA	NA	-39	NR_106159	102466849		NR_106159	ENSMUSG00000098280	Mir7687	Gm27573|mmu-mir-7687	microRNA 7687	ncRNA	0.050000	0.616915	
mm_14236.1	chr2	127691762	127691962	+	1	NA	NA	NA	-35167	NM_001171187	17153	Mm.39040	NM_010762	ENSMUSG00000027375	Mal	Mpv17|Vip17	myelin and lymphocyte protein, T cell differentiation protein	protein-coding	0.035000	0.502488	
mm_104815.1	chr11	98968651	98968851	-	1	NA	NA	NA	8280	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.025000	0.562189	
mm_169968.1	chr17	13006742	13006942	+	1	NA	NA	NA	-997	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.000000	0.517413	
mm_41069.1	chr5	87667132	87667332	+	1	NA	NA	NA	1024	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.020000	0.412935	
mm_154277.1	chr19	60790493	60790693	-	1	NA	NA	NA	100	NM_010123	13669	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	0.115000	0.676617	
mm_47258.1	chr5	121673888	121674088	-	1	NA	NA	NA	13119	NM_001289544	72399	Mm.153372	NM_028227	ENSMUSG00000029458	Brap	3010002G07Rik|BRAP2|IMP	BRCA1 associated protein	protein-coding	0.005000	0.462687	61(ATTTTTATGGGC,+,0.00)
mm_55064.1	chr6	49050359	49050559	-	1	NA	NA	NA	13941	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.010000	0.427861	
mm_47688.1	chr5	129116515	129116715	-	1	NA	NA	NA	19865	NM_001347486	243277	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding	0.015000	0.532338	
mm_23662.1	chr3	68489477	68489677	+	1	NA	NA	NA	-4604	NM_001282044	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.000000	0.373134	
mm_5307.1	chr1	22315758	22315958	-	1	NA	NA	NA	116985	NM_053270	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.000000	0.492537	
mm_122362.1	chr14	39242394	39242594	-	1	NA	NA	NA	-229935	NR_131973	432842	Mm.352566	NR_131973		LOC432842	-	uncharacterized LOC432842	ncRNA	0.000000	0.373134	
mm_50267.1	chr6	45060005	45060205	+	1	NA	NA	NA	44	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.015000	0.557214	
mm_158126.1	chrX	102644071	102644271	-	1	NA	NA	NA	75	NM_008832	18679	Mm.212889	NM_008832	ENSMUSG00000034055	Phka1	5330411D17|9830108K24Rik|Phka	phosphorylase kinase alpha 1	protein-coding	0.120000	0.741294	
mm_110418.1	chr12	46816842	46817042	-	1	NA	NA	NA	1833	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.005000	0.378109	
mm_89342.1	chr10	87935874	87936074	+	1	NA	NA	NA	-30697	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.407960	18(TCTTTTAGAGGC,+,0.00),47(GTCTTTTAAAAC,-,0.00),49(CTTTTAAAACAC,+,0.00)
mm_85128.1	chr9	95558868	95559068	-	1	NA	NA	NA	-849	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.035000	0.502488	-34(GTGTCTAAAGGG,-,0.00)
mm_46634.1	chr5	108519604	108519804	-	1	NA	NA	NA	30323	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.005000	0.611940	
mm_163813.1	chr14	19416281	19416481	-	1	NA	NA	NA	186206	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.010000	0.343284	
mm_103819.1	chr11	83003632	83003832	-	1	NA	NA	NA	-11902	NM_172796	237886	Mm.270253	NM_172796	ENSMUSG00000069793	Slfn9	9830137M10Rik	schlafen 9	protein-coding	0.015000	0.442786	
mm_51634.1	chr6	85889210	85889410	+	1	NA	NA	NA	13223	NM_001145895	75541	Mm.24454	NM_029331	ENSMUSG00000068299	Nat8f4	1700019G17Rik	N-acetyltransferase 8 (GCN5-related) family member 4	protein-coding	0.005000	0.482587	
mm_5837.1	chr1	52947915	52948115	-	1	NA	NA	NA	4825	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.015000	0.462687	
mm_106958.1	chr12	8921596	8921796	+	1	NA	NA	NA	389	NM_008640	17775	Mm.30071	NM_008640	ENSMUSG00000020585	Laptm4a	AA286466|LAPTM4|MTP|Mtrp|mKIAA0108	lysosomal-associated protein transmembrane 4A	protein-coding	0.090000	0.592040	
mm_16380.1	chr2	178327423	178327623	+	1	NA	NA	NA	80135	NM_177191	320558	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding	0.040000	0.651741	
mm_15088.1	chr2	153241359	153241559	+	1	NA	NA	NA	-73	NM_080463	140484	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	0.145000	0.791045	
mm_27045.1	chr3	27191837	27192037	-	1	NA	NA	NA	8933	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.005000	0.507463	
mm_97523.1	chr11	78501622	78501822	+	1	NA	NA	NA	-1791	NM_008759	18292	Mm.134360	NM_008759	ENSMUSG00000001103	Sebox	OG9|Og9x	SEBOX homeobox	protein-coding	0.085000	0.567164	
mm_17037.1	chr2	20670973	20671173	-	1	NA	NA	NA	151560	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.015000	0.517413	
mm_138668.1	chr17	35879697	35879897	+	1	NA	NA	NA	19	NM_026987	69192	Mm.390986	NM_026987	ENSMUSG00000024422	Dhx16	2410006N22Rik|DBP2|Ddx16|mKIAA0577	DEAH (Asp-Glu-Ala-His) box polypeptide 16	protein-coding	0.130000	0.666667	
mm_89570.1	chr10	95514779	95514979	+	1	NA	NA	NA	-283	NM_080560	93765	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.145000	0.726368	
mm_157568.1	chrX	52543093	52543293	-	1	NA	NA	NA	-32650	NR_045367	100504594	Mm.447008	NR_045367	ENSMUSG00000055110	A630012P03Rik	-	RIKEN cDNA A630012P03 gene	ncRNA	0.000000	0.388060	-7(TTTTTTAAACAC,+,0.00)
mm_83941.1	chr9	56796195	56796395	-	1	NA	NA	NA	55668	NM_198673	382075	Mm.335177	NM_198673	ENSMUSG00000045620	Odf3l1	BC049697|Gm1116	outer dense fiber of sperm tails 3-like 1	protein-coding	0.135000	0.716418	
mm_102168.1	chr11	53891518	53891718	-	1	NA	NA	NA	85	NM_011396	20520	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0.100000	0.686567	
mm_156016.1	chrX	107089549	107089749	+	1	NA	NA	NA	314	NM_172435	78826	Mm.74639	NM_172435	ENSMUSG00000050921	P2ry10	5830408N17Rik|Lypsr2|P2Y10	purinergic receptor P2Y, G-protein coupled 10	protein-coding	0.000000	0.417910	
mm_83782.1	chr9	52164420	52164620	-	1	NA	NA	NA	3591	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.005000	0.432836	
mm_97933.1	chr11	83648430	83648630	+	1	NA	NA	NA	848	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.025000	0.512438	
mm_137570.1	chr17	27840067	27840267	+	1	NA	NA	NA	80	NM_011432	20630	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	0.080000	0.661692	
mm_163462.1	chr12	100569760	100569960	+	1	NA	NA	NA	-49038	NM_001033213	104718	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.005000	0.393035	
mm_23308.1	chr3	53041448	53041648	+	1	NA	NA	NA	1	NM_175386	108927	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968	lipoma HMGIC fusion partner	protein-coding	0.120000	0.751244	
mm_90147.1	chr10	118141463	118141663	+	1	NA	NA	NA	-224	NM_001162904	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.065000	0.631841	
mm_4327.1	chr1	171851999	171852199	+	1	NA	NA	NA	12402	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.015000	0.398010	
mm_69179.1	chr7	127218747	127218947	-	1	NA	NA	NA	-402	NM_017461	54204	Mm.18	NM_017461	ENSMUSG00000000486	Sept1	Diff6|Pnutl3	septin 1	protein-coding	0.010000	0.442786	80(CTGTATATAAGG,-,0.00)
mm_108469.1	chr12	83641403	83641603	+	1	NA	NA	NA	9269	NM_027349	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.005000	0.333333	
mm_139075.1	chr17	46655418	46655618	+	1	NA	NA	NA	5180	NM_025611	66515	Mm.329078	NM_025611	ENSMUSG00000038545	Cul7	2510004L20Rik|AA409809|C230011P08Rik|p185|p193	cullin 7	protein-coding	0.020000	0.572139	
mm_55163.1	chr6	51873584	51873784	-	1	NA	NA	NA	138865	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.000000	0.253731	
mm_56259.1	chr6	90809987	90810187	-	1	NA	NA	NA	36	NM_001134384	232227	Mm.196943	NM_182784	ENSMUSG00000034312	Iqsec1	AW561907|BC026481|BRAG2|D6Ertd349e|cI-43	IQ motif and Sec7 domain 1	protein-coding	0.060000	0.651741	
mm_141209.1	chr17	27133498	27133698	-	1	NA	NA	NA	293	NM_026063	67267	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	0.070000	0.592040	
mm_142292.1	chr17	40792578	40792778	-	1	NA	NA	NA	1468	NM_001204071	22024	Mm.1296	NM_009420	ENSMUSG00000023930	Crisp2	CRISP-2|GAPDL5|Tpx-1|Tpx1	cysteine-rich secretory protein 2	protein-coding	0.000000	0.268657	
mm_64292.1	chr7	141858268	141858468	+	1	NA	NA	NA	19296	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.010000	0.537313	
mm_22371.1	chr2	181150883	181151083	-	1	NA	NA	NA	6032	NM_007906	13628	Mm.2645	NM_007906	ENSMUSG00000016349	Eef1a2	Eef1a|S1|wasted|wst	eukaryotic translation elongation factor 1 alpha 2	protein-coding	0.030000	0.597015	
mm_11438.1	chr2	32017395	32017595	+	1	NA	NA	NA	-33451	NR_106135	102466844		NR_106135	ENSMUSG00000099075	Mir7674	Gm27563|mmu-mir-7674	microRNA 7674	ncRNA	0.005000	0.517413	
mm_164804.1	chr18	25194877	25195077	+	1	NA	NA	NA	25957	NM_001033532	225289	Mm.391081	NM_001033532	ENSMUSG00000033632	AW554918	4921538P22|AI461742|Kiaa1328|mKIAA1328	expressed sequence AW554918	protein-coding	0.010000	0.388060	
mm_1784.1	chr1	78537867	78538067	+	1	NA	NA	NA	26907	NM_026713	68393	Mm.41325	NM_026713	ENSMUSG00000012187	Mogat1	0610030A14Rik|1110064N14Rik|Dgat2l|Dgat2l1|MGAT1|WI1-2612I11.1|mDC2	monoacylglycerol O-acyltransferase 1	protein-coding	0.025000	0.542289	
mm_55627.1	chr6	72313959	72314159	-	1	NA	NA	NA	9449	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.010000	0.636816	
mm_48446.1	chr5	140648935	140649135	-	1	NA	NA	NA	-4	NM_175274	78339	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.140000	0.815920	
mm_69256.1	chr7	127875553	127875753	-	1	NA	NA	NA	1170	NM_146259	244219	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.080000	0.597015	
mm_125217.1	chr15	34082916	34083116	+	1	NA	NA	NA	297	NM_026002	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.110000	0.711443	
mm_4587.1	chr1	178319179	178319379	+	1	NA	NA	NA	126	NM_025511	66359	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	COX20 Cox2 chaperone	protein-coding	0.060000	0.582090	
mm_106421.1	chr11	119252204	119252404	-	1	NA	NA	NA	-15659	NM_001159324	14387	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.020000	0.542289	
mm_38179.1	chr4	135272612	135272812	-	1	NA	NA	NA	48	NM_013885	29876	Mm.257765	NM_013885	ENSMUSG00000037242	Clic4	D0Jmb3|TU-74|mc3s5|mtCLIC	chloride intracellular channel 4 (mitochondrial)	protein-coding	0.125000	0.731343	
mm_43474.1	chr5	136695097	136695297	+	1	NA	NA	NA	1020	NM_001085387	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.020000	0.587065	
mm_57956.1	chr6	135168086	135168286	-	1	NA	NA	NA	29	NM_013546	15199	Mm.378937	NM_013546	ENSMUSG00000042770	Hebp1	Hebp|p22HBP	heme binding protein 1	protein-coding	0.090000	0.681592	
mm_133015.1	chr16	56204187	56204387	+	1	NA	NA	NA	-26	NM_174876	224224	Mm.151998	NM_174876	ENSMUSG00000035270	Impg2	IPM200|PG10.2|Rsbp|Spacrcan	interphotoreceptor matrix proteoglycan 2	protein-coding	0.025000	0.422886	
mm_91385.1	chr10	30629551	30629751	-	1	NA	NA	NA	-11285	NM_025798	66847	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	0.010000	0.482587	-32(GCTTTAAGACCC,+,0.00)
mm_90176.1	chr10	119691941	119692141	+	1	NA	NA	NA	69658	NR_045359	75321	Mm.402041	NR_045359	ENSMUSG00000084764	Grip1os2	4930564G21Rik	glutamate receptor interacting protein 1, opposite strand 2	ncRNA	0.025000	0.527363	
mm_140206.1	chr17	83775431	83775631	+	1	NA	NA	NA	69368	NM_001171052	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.040000	0.547264	
mm_134595.1	chr16	20589913	20590113	-	1	NA	NA	NA	431	NM_001144953	328643	Mm.40539	NM_182636	ENSMUSG00000046613	Vwa5b2	BB182430|EG328644|Gm1738|Gm931	von Willebrand factor A domain containing 5B2	protein-coding	0.090000	0.726368	
mm_114548.1	chr13	73956472	73956672	+	1	NA	NA	NA	-7290	NM_027704	71164	Mm.66995	NM_027704	ENSMUSG00000069189	Zdhhc11	4933421L13Rik|DHHC-11|Zdhhc20	zinc finger, DHHC domain containing 11	protein-coding	0.005000	0.328358	
mm_90512.1	chr10	128042740	128042940	+	1	NA	NA	NA	7494	NM_001113199	17938	Mm.3746	NM_013608	ENSMUSG00000061315	Naca	AL022831|AL024382|Gm1878|mKIAA0363|skNAC	nascent polypeptide-associated complex alpha polypeptide	protein-coding	0.000000	0.537313	
mm_151393.1	chr19	56425664	56425864	+	1	NA	NA	NA	28635	NM_007611	12369	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.035000	0.587065	
mm_119460.1	chr14	47068913	47069113	+	1	NA	NA	NA	36	NM_001310544	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.030000	0.517413	
mm_104688.1	chr11	97766441	97766641	-	1	NA	NA	NA	72	NM_026186	67480	Mm.33206	NM_026186	ENSMUSG00000018541	Cwc25	1300013D05Rik|AA473636|Ccdc49|R75228	CWC25 spliceosome-associated protein	protein-coding	0.065000	0.562189	
mm_161032.1	chr12	16740094	16740294	-	1	NA	NA	NA	17045	NM_001252071	268527	Mm.428062	NM_015764	ENSMUSG00000036523	Greb1	5730583K22Rik|9130004E13|AF180470|AU023194|mKIAA0575	gene regulated by estrogen in breast cancer protein	protein-coding	0.015000	0.587065	
mm_1846.1	chr1	82925286	82925486	+	1	NA	NA	NA	85926	NM_001347077	15463	Mm.392569	NM_010472	ENSMUSG00000026159	Agfg1	AU045498|C130049H11Rik|C85612|D730048C23Rik|Hrb|RAB|Rip	ArfGAP with FG repeats 1	protein-coding	0.000000	0.492537	
mm_42921.1	chr5	122720247	122720447	+	1	NA	NA	NA	12803	NM_001310718	18438	Mm.290884	NM_011026	ENSMUSG00000029470	P2rx4	AI504491|AW555605|D5Ertd444e|P2X4	purinergic receptor P2X, ligand-gated ion channel 4	protein-coding	0.000000	0.512438	
mm_27149.1	chr3	33079155	33079355	-	1	NA	NA	NA	3805	NM_021483	58869	Mm.151332	NM_021483	ENSMUSG00000027674	Pex5l	1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp	peroxisomal biogenesis factor 5-like	protein-coding	0.005000	0.402985	
mm_153316.1	chr19	38043681	38043881	-	1	NA	NA	NA	-204	NM_001302140	226101	Mm.34674	NM_177035	ENSMUSG00000048612	Myof	2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3	myoferlin	protein-coding	0.030000	0.412935	-100(CTTTTTAAAAAG,+,0.00),-100(CTTTTTAAAAAG,-,0.00)
mm_107235.1	chr12	26478166	26478366	+	1	NA	NA	NA	9051	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.015000	0.472637	
mm_152253.1	chr19	8723267	8723467	-	1	NA	NA	NA	2	NM_001161413	17254	Mm.4114	NM_008577	ENSMUSG00000010095	Slc3a2	4F2|4F2HC|AI314110|Cd98|Ly-10|Ly-m10|Ly10|Mdu1|Mgp-2hc|NACAE	solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	protein-coding	0.090000	0.601990	-99(GCCTATAAATAG,-,0.00)
mm_172485.1	chr7	51862279	51862479	+	1	NA	NA	NA	-112	NM_001115087	100040608	Mm.322643	NM_001115087	ENSMUSG00000092118	Fancf	A730016A17	Fanconi anemia, complementation group F	protein-coding	0.090000	0.592040	
mm_83274.1	chr9	43071056	43071256	-	1	NA	NA	NA	34562	NM_027144	69632	Mm.275266	NM_027144	ENSMUSG00000059495	Arhgef12	2310014B11Rik|AU019857|Larg|mKIAA0382	Rho guanine nucleotide exchange factor (GEF) 12	protein-coding	0.015000	0.492537	
mm_171947.1	chr5	7622495	7622695	-	1	NA	NA	NA	-278217	NM_001163223	207618	Mm.478808	NM_001163223	ENSMUSG00000092094	Zfp804b	Gm441	zinc finger protein 804B	protein-coding	0.030000	0.487562	
mm_108308.1	chr12	79481903	79482103	+	1	NA	NA	NA	184652	NM_001252562	19363	Mm.341756	NM_009014	ENSMUSG00000059060	Rad51b	AI553500|R51H2|Rad51l1|mREC2	RAD51 paralog B	protein-coding	0.010000	0.417910	
mm_84861.1	chr9	78585019	78585219	-	1	NA	NA	NA	2926	NM_172773	235504	Mm.46932	NM_172773	ENSMUSG00000049624	Slc17a5	4631416G20Rik|4732491M05|AST|ISSD|NSD|SD|SIALIN|SIASD|SLD	solute carrier family 17 (anion/sugar transporter), member 5	protein-coding	0.035000	0.482587	
mm_89527.1	chr10	94467821	94468021	+	1	NA	NA	NA	-46936	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.005000	0.363184	
mm_72872.1	chr8	88680842	88681042	+	1	NA	NA	NA	-16086	NM_001128170	74256	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	0.010000	0.412935	
mm_96006.1	chr11	59541508	59541708	+	1	NA	NA	NA	-1078	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.005000	0.402985	83(TCTTTTAGACTC,+,0.00)
mm_32870.1	chr4	118437391	118437591	+	1	NA	NA	NA	-148	NM_023223	107995	Mm.261764	NM_023223	ENSMUSG00000006398	Cdc20	2310042N09Rik|C87100|p55CDC	cell division cycle 20	protein-coding	0.090000	0.616915	
mm_67361.1	chr7	79838587	79838787	-	1	NA	NA	NA	3665	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.025000	0.587065	
mm_20721.1	chr2	136387595	136387795	-	1	NA	NA	NA	272	NM_172858	241656	Mm.131572	NM_172858	ENSMUSG00000039913	Pak7	2900083L08Rik|6430627N20|Pak5	p21 protein (Cdc42/Rac)-activated kinase 7	protein-coding	0.065000	0.621891	
mm_113290.1	chr13	30331745	30331945	+	1	NA	NA	NA	-4511	NM_177322	11607	Mm.35062	NM_177322	ENSMUSG00000049115	Agtr1a	1810074K20Rik|AG2S|AI551199|AT1|AT1a|AT2R1|AT2R1A|Agtr-1a|Agtr1|Angtr-1a	angiotensin II receptor, type 1a	protein-coding	0.010000	0.353234	-45(CTTTTTATAACA,+,0.00)
mm_17217.1	chr2	25493799	25493999	-	1	NA	NA	NA	12	NM_029958	77701	Mm.99123	NM_029958	ENSMUSG00000026943	Lcn12	9230102M18Rik	lipocalin 12	protein-coding	0.015000	0.611940	
mm_120772.1	chr14	73552733	73552933	+	1	NA	NA	NA	47	NM_011506	20916	Mm.38951	NM_011506	ENSMUSG00000022110	Sucla2	4930547K18Rik|A-SCS	succinate-Coenzyme A ligase, ADP-forming, beta subunit	protein-coding	0.140000	0.731343	
mm_76771.1	chr8	95818173	95818373	-	1	NA	NA	NA	-10811	NM_001205226	234594	Mm.259220	NM_153164	ENSMUSG00000036550	Cnot1	6030411K04Rik|AA815922|D830048B13	CCR4-NOT transcription complex, subunit 1	protein-coding	0.000000	0.398010	
mm_56194.1	chr6	88837347	88837547	-	1	NA	NA	NA	4488	NM_030251	80283	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.010000	0.462687	
mm_151550.1	chr19	59458556	59458756	+	1	NA	NA	NA	-21	NR_002863	329078	Mm.80382	NR_002863	ENSMUSG00000087095	Emx2os	-	Emx2 opposite strand/antisense transcript (non-protein coding)	ncRNA	0.055000	0.542289	-34(CACTTTAAAGAG,-,0.00),-32(CTTTAAAGAGTC,+,0.00)
mm_157536.1	chrX	51130082	51130282	-	1	NA	NA	NA	75808	NM_001310515	171170	Mm.295324	NM_134163	ENSMUSG00000036109	Mbnl3	A530038J18Rik|AI661274|CHCR|E430034C16Rik|MBLX|MBLX39|MBXL	muscleblind-like 3 (Drosophila)	protein-coding	0.015000	0.477612	
mm_64183.1	chr7	141459518	141459718	+	1	NA	NA	NA	-1476	NM_001025103	213573	Mm.386851	NM_001025103	ENSMUSG00000048200	Cracr2b	6330520A15Rik|BC026645|Cracr2a|Efcab4|Efcab4a	calcium release activated channel regulator 2B	protein-coding	0.050000	0.636816	
mm_131522.1	chr16	17619375	17619575	+	1	NA	NA	NA	121	NM_001164609	77626	Mm.34659	NM_029945	ENSMUSG00000005899	Smpd4	4122402O22Rik|mKIAA1418	sphingomyelin phosphodiesterase 4	protein-coding	0.105000	0.691542	
mm_43174.1	chr5	127615716	127615916	+	1	NA	NA	NA	1576	NM_133895	100561	Mm.28506	NM_133895	ENSMUSG00000029416	Slc15a4	AA987064|AW742963|C130069N12Rik|PHT1|PTR4	solute carrier family 15, member 4	protein-coding	0.010000	0.457711	
mm_37079.1	chr4	116371561	116371761	-	1	NA	NA	NA	92520	NM_001042743	17776	Mm.9287	NM_008641	ENSMUSG00000003810	Mast2	MAST205|Mtssk	microtubule associated serine/threonine kinase 2	protein-coding	0.000000	0.363184	
mm_147030.1	chr18	34720154	34720354	-	1	NA	NA	NA	133	NM_010280	14587	Mm.16520	NM_010280	ENSMUSG00000024366	Gfra3	GFRalpha3|Y15110	glial cell line derived neurotrophic factor family receptor alpha 3	protein-coding	0.095000	0.716418	
mm_135359.1	chr16	43973818	43974018	-	1	NA	NA	NA	5132	NM_001007460	332175	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	0.030000	0.582090	
mm_147375.1	chr18	43634690	43634890	-	1	NA	NA	NA	52983	NM_001163637	76217	Mm.134602	NM_001163637	ENSMUSG00000024502	Jakmip2	6430702L21Rik|AI850334|D930046L20Rik	janus kinase and microtubule interacting protein 2	protein-coding	0.000000	0.323383	
mm_97141.1	chr11	75214015	75214215	+	1	NA	NA	NA	20122	NM_177708	237847	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0.065000	0.646766	
mm_74006.1	chr8	121084260	121084460	+	1	NA	NA	NA	-26	NM_010426	15227	Mm.33897	NM_010426	ENSMUSG00000042812	Foxf1	AI450827|FREAC1|Foxf1a|Freac-1|HFH-8|Hfh8	forkhead box F1	protein-coding	0.130000	0.791045	
mm_46068.1	chr5	92309874	92310074	-	1	NA	NA	NA	50	NM_172713	231452	Mm.86564	NM_172713	ENSMUSG00000029415	Sdad1	4931421J16|AA591032|AW538460	SDA1 domain containing 1	protein-coding	0.090000	0.646766	
mm_100850.1	chr11	5803586	5803786	-	1	NA	NA	NA	110	NM_018870	56012	Mm.219627	NM_018870	ENSMUSG00000020475	Pgam2	-	phosphoglycerate mutase 2	protein-coding	0.025000	0.562189	
mm_145654.1	chr18	61129609	61129809	+	1	NA	NA	NA	12241	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.025000	0.517413	
mm_60458.1	chr7	44477564	44477764	+	1	NA	NA	NA	-6853	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.010000	0.427861	
mm_102495.1	chr11	60352783	60352983	-	1	NA	NA	NA	22	NM_153080	216810	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	0.090000	0.681592	
mm_138774.1	chr17	37195162	37195362	+	1	NA	NA	NA	1370	NM_023137	24108	Mm.140210	NM_023137	ENSMUSG00000035186	Ubd	FAT10	ubiquitin D	protein-coding	0.020000	0.477612	
mm_145824.1	chr18	65436031	65436231	+	1	NA	NA	NA	5134	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.000000	0.363184	
mm_39466.1	chr5	19226961	19227161	+	1	NA	NA	NA	15	NM_001170746	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.080000	0.656716	
mm_41799.1	chr5	103753647	103753847	+	1	NA	NA	NA	-415	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.080000	0.636816	
mm_142855.1	chr17	51812218	51812418	-	1	NA	NA	NA	-264	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.040000	0.522388	
mm_40531.1	chr5	57920217	57920417	+	1	NA	NA	NA	202236	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.000000	0.457711	
mm_29334.1	chr3	108146015	108146215	-	1	NA	NA	NA	37	NM_010306	14679	Mm.271703	NM_010306	ENSMUSG00000000001	Gnai3	AI158965|AW537698|Galphai3|Gnai-3	guanine nucleotide binding protein (G protein), alpha inhibiting 3	protein-coding	0.100000	0.671642	
mm_34378.1	chr4	144895480	144895680	+	1	NA	NA	NA	2443	NM_011303	20148	Mm.14063	NM_011303	ENSMUSG00000066026	Dhrs3	Rsdr1|retSDR1	dehydrogenase/reductase (SDR family) member 3	protein-coding	0.020000	0.522388	
mm_75601.1	chr8	61759985	61760185	-	1	NA	NA	NA	13	NM_001293773	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.080000	0.661692	
mm_104534.1	chr11	96308782	96308982	-	1	NA	NA	NA	-1972	NR_131758	75395	Mm.440014	NR_131758	ENSMUSG00000085645	Hoxb5os	0610040B09Rik|AV302770|Hoxb5/6as	homeobox B5 and homeobox B6, opposite strand	ncRNA	0.010000	0.467662	
mm_143070.1	chr17	57022329	57022529	-	1	NA	NA	NA	9078	NM_010613	16549	Mm.34296	NM_010613	ENSMUSG00000007670	Khsrp	6330409F21Rik|Fbp2|Fubp2|Ksrp	KH-type splicing regulatory protein	protein-coding	0.020000	0.502488	
mm_148235.1	chr18	80469592	80469792	-	1	NA	NA	NA	-25	NM_026295	67655	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.155000	0.736318	
mm_22310.1	chr2	180429706	180429906	-	1	NA	NA	NA	-31172	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.005000	0.462687	
mm_47803.1	chr5	132543048	132543248	-	1	NA	NA	NA	-805	NM_177047	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.140000	0.761194	
mm_62342.1	chr7	100498030	100498230	+	1	NA	NA	NA	4772	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.045000	0.656716	
mm_21395.1	chr2	157566612	157566812	-	1	NA	NA	NA	-351	NM_016916	53619	Mm.480461	NM_016916	ENSMUSG00000067787	Blcap	AI462828|Bc10	bladder cancer associated protein	protein-coding	0.050000	0.532338	
mm_130513.1	chr15	98862811	98863011	-	1	NA	NA	NA	8294	NM_001033276	381022	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.010000	0.601990	
mm_171138.1	chr3	150073491	150073691	-	1	NA	NA	NA	798854	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.045000	0.412935	
mm_65706.1	chr7	28377954	28378154	-	1	NA	NA	NA	1174	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.045000	0.606965	
mm_78229.1	chr9	21589136	21589336	+	1	NA	NA	NA	-3486	NM_178619	69773	Mm.39704	NM_178619	ENSMUSG00000048429	Timm29	1810026J23Rik	translocase of inner mitochondrial membrane 29	protein-coding	0.005000	0.572139	
mm_61609.1	chr7	80038237	80038437	+	1	NA	NA	NA	12109	NM_175433	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.005000	0.388060	
mm_12882.1	chr2	84727577	84727777	+	1	NA	NA	NA	-409	NM_133840	98985	Mm.21583	NM_133840	ENSMUSG00000027079	Clp1	AI462438|Heab	CLP1, cleavage and polyadenylation factor I subunit	protein-coding	0.045000	0.517413	
mm_52297.1	chr6	108783126	108783326	+	1	NA	NA	NA	167	NM_026011	67166	Mm.271178	NM_026011	ENSMUSG00000030105	Arl8b	2610313E07Rik|3100002J04Rik|Arl10c|gie1	ADP-ribosylation factor-like 8B	protein-coding	0.135000	0.701493	
mm_122182.1	chr14	31577226	31577426	-	1	NA	NA	NA	57	NM_009937	382864	Mm.239821	NM_009937	ENSMUSG00000057606	Colq	A130034K24Rik	collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase	protein-coding	0.005000	0.547264	
mm_134159.1	chr16	10791486	10791686	-	1	NA	NA	NA	519	NM_008933	19119	Mm.325769	NM_008933	ENSMUSG00000038015	Prm2	AI528784|Prm-2	protamine 2	protein-coding	0.010000	0.552239	
mm_111418.1	chr12	91573471	91573671	-	1	NA	NA	NA	16078	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.000000	0.432836	
mm_79811.1	chr9	64178216	64178416	+	1	NA	NA	NA	-981	NM_183316	330959	Mm.24082	NM_183316	ENSMUSG00000032398	Snapc5	2010103A03Rik	small nuclear RNA activating complex, polypeptide 5	protein-coding	0.015000	0.512438	
mm_148194.1	chr18	79060957	79061157	-	1	NA	NA	NA	48334	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.000000	0.472637	
mm_29452.1	chr3	113195009	113195209	-	1	NA	NA	NA	-38382	NM_001190403	545562	Mm.462977	NM_001190403		Amy2b	Amy-X|Amy2-2|OTTMUSG00000022462|mAmy2-1	amylase 2b	protein-coding	0.005000	0.383085	
mm_7639.1	chr1	127976379	127976579	-	1	NA	NA	NA	107706	NM_178690	226407	Mm.489713	NM_178690	ENSMUSG00000036104	Rab3gap1	1700003B17Rik|4732493F09Rik|AL117896|Rab3gap|p130	RAB3 GTPase activating protein subunit 1	protein-coding	0.015000	0.402985	
mm_97490.1	chr11	78328349	78328549	+	1	NA	NA	NA	27	NM_201406	276846	Mm.295908	NM_201406	ENSMUSG00000041958	Pigs	BC058979|Gm393|Gm689	phosphatidylinositol glycan anchor biosynthesis, class S	protein-coding	0.085000	0.671642	
mm_86939.1	chr10	24595340	24595540	+	1	NA	NA	NA	-2	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.040000	0.557214	29(GCGTATAAAAGC,-,0.00)
mm_106311.1	chr11	118302297	118302497	-	1	NA	NA	NA	-12153	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.015000	0.412935	-90(GCCCTTATAGGG,+,0.00),-90(GCCCTTATAGGG,-,0.00),-88(CCTTATAGGGAA,+,0.00)
mm_162316.1	chr1	37998196	37998396	+	1	NA	NA	NA	286	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.120000	0.696517	
mm_17499.1	chr2	28699634	28699834	-	1	NA	NA	NA	-83	NM_027283	69987	Mm.239376	NM_027283	ENSMUSG00000026809	Spaca9	1700026L06Rik|MAST	sperm acrosome associated 9	protein-coding	0.065000	0.686567	
mm_64744.1	chr7	4771204	4771404	-	1	NA	NA	NA	-34	NM_172895	243822	Mm.333542	NM_172895	ENSMUSG00000092518	Fam71e2	4930401F20Rik	family with sequence similarity 71, member E2	protein-coding	0.015000	0.577114	
mm_168072.1	chr10	109099462	109099662	+	1	NA	NA	NA	-88587	NM_001252341	20979	Mm.289702	NM_009306	ENSMUSG00000035864	Syt1	AW124717|G630098F17Rik|SytI	synaptotagmin I	protein-coding	0.025000	0.487562	-43(GAGTATATAAGA,-,0.00)
mm_91284.1	chr10	24784923	24785123	-	1	NA	NA	NA	51172	NM_134005	209558	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	0.005000	0.388060	
mm_31888.1	chr4	82507913	82508113	+	1	NA	NA	NA	24	NR_137202	102635783	Mm.41666	NR_137202		Gm11266	OTTMUSG00000000396	predicted gene 11266	ncRNA	0.010000	0.517413	
mm_64314.1	chr7	141864778	141864978	+	1	NA	NA	NA	25806	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.025000	0.512438	
mm_54856.1	chr6	42593429	42593629	-	1	NA	NA	NA	3843	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.030000	0.487562	
mm_53583.1	chr6	137459203	137459403	+	1	NA	NA	NA	48582	NM_001164403	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.020000	0.422886	-21(GCTTTAATGTCC,+,0.00)
mm_32412.1	chr4	107009613	107009813	+	1	NA	NA	NA	57153	NM_025500	56280	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0.030000	0.621891	
mm_13774.1	chr2	118709776	118709976	+	1	NA	NA	NA	-5913	NM_001081971	383787	Mm.35758	NM_001081971	ENSMUSG00000078137	Ankrd63	Gm1337	ankyrin repeat domain 63	protein-coding	0.010000	0.567164	
mm_159417.1	chr3	105960155	105960355	-	1	NA	NA	NA	-7	NM_009725	11950	Mm.251152	NM_009725	ENSMUSG00000000563	Atp5f1	C76477	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit B1	protein-coding	0.010000	0.462687	
mm_146854.1	chr18	24121746	24121946	-	1	NA	NA	NA	-27	NM_172625	225280	Mm.258973	NM_172625	ENSMUSG00000047989	Ino80c	D030070L09Rik	INO80 complex subunit C	protein-coding	0.075000	0.611940	
mm_7449.1	chr1	120258777	120258977	-	1	NA	NA	NA	6403	NM_133186	68428	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.035000	0.587065	
mm_93336.1	chr10	99759360	99759560	-	1	NA	NA	NA	198	NM_027945	71832	Mm.483162	NM_027945	ENSMUSG00000046934	Csl	1700007H16Rik	citrate synthase like	protein-coding	0.035000	0.482587	
mm_107229.1	chr12	26477916	26478116	+	1	NA	NA	NA	8801	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.020000	0.507463	
mm_126786.1	chr15	86214367	86214567	+	1	NA	NA	NA	8	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.105000	0.671642	
mm_166409.1	chr5	137149164	137149364	-	1	NA	NA	NA	-33057	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.010000	0.512438	
mm_144115.1	chr18	4375503	4375703	+	1	NA	NA	NA	11	NM_026157	67440	Mm.49826	NM_026157	ENSMUSG00000024234	Mtpap	0610027A18Rik|AW551379|Papd1	mitochondrial poly(A) polymerase	protein-coding	0.080000	0.552239	
mm_162346.1	chr1	52934462	52934662	+	1	NA	NA	NA	18278	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.010000	0.427861	
mm_71359.1	chr8	45658809	45659009	+	1	NA	NA	NA	-3084	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.015000	0.422886	-64(CCTTTTAAAAAG,+,0.00),-64(CCTTTTAAAAAG,-,0.00)
mm_96900.1	chr11	70451865	70452065	+	1	NA	NA	NA	34	NM_025397	66172	Mm.46424	NM_025397	ENSMUSG00000018923	Med11	1110030J09Rik|AI465144|AW545069	mediator complex subunit 11	protein-coding	0.090000	0.611940	
mm_23969.1	chr3	84978031	84978231	+	1	NA	NA	NA	25920	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.000000	0.313433	
mm_41049.1	chr5	86110146	86110346	+	1	NA	NA	NA	38500	NM_001310639	56792	Mm.131237	NM_019992	ENSMUSG00000029254	Stap1	AI586015|Brdg1|STAP-1	signal transducing adaptor family member 1	protein-coding	0.000000	0.328358	85(CAGTATATAAGG,-,0.00)
mm_86561.1	chr10	11281272	11281472	+	1	NA	NA	NA	42	NM_027968	71865	Mm.276229	NM_027968	ENSMUSG00000047648	Fbxo30	1700026A16Rik|MUSA1	F-box protein 30	protein-coding	0.150000	0.796020	
mm_151927.1	chr19	5800044	5800244	-	1	NA	NA	NA	2528	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.020000	0.487562	
mm_48652.1	chr5	145868490	145868690	-	1	NA	NA	NA	11264	NM_007818	13112	Mm.332844	NM_007818	ENSMUSG00000056035	Cyp3a11	AI256190|Cyp3a|IIIAm1|Pcn	cytochrome P450, family 3, subfamily a, polypeptide 11	protein-coding	0.005000	0.422886	
mm_62322.1	chr7	100371997	100372197	+	1	NA	NA	NA	-136	NM_001017985	277939	Mm.276374	NM_001017985	ENSMUSG00000047248	C2cd3	AU020772	C2 calcium-dependent domain containing 3	protein-coding	0.045000	0.522388	
mm_2154.1	chr1	88186511	88186711	+	1	NA	NA	NA	-14000	NM_013701	22236	Mm.300095	NM_013701	ENSMUSG00000090171	Ugt1a2	UDPGT 1-2|Ugt1	UDP glucuronosyltransferase 1 family, polypeptide A2	protein-coding	0.005000	0.422886	
mm_68694.1	chr7	119601016	119601216	-	1	NA	NA	NA	-16712	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.000000	0.427861	-36(CCATATAAAAAG,-,0.00)
mm_24372.1	chr3	90220707	90220907	+	1	NA	NA	NA	23	NM_026677	68328	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	0.065000	0.676617	
mm_35666.1	chr4	43562218	43562418	-	1	NA	NA	NA	265	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.110000	0.686567	
mm_50533.1	chr6	49045575	49045775	+	1	NA	NA	NA	9157	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.025000	0.422886	
mm_42589.1	chr5	117357117	117357317	+	1	NA	NA	NA	-88	NM_021539	59043	Mm.28489	NM_021539	ENSMUSG00000029364	Wsb2	AA673511|Swip2|WSB-2	WD repeat and SOCS box-containing 2	protein-coding	0.140000	0.810945	
mm_20018.1	chr2	119324868	119325068	-	1	NA	NA	NA	-816	NM_019454	54485	Mm.143719	NM_019454	ENSMUSG00000027314	Dll4	Delta4	delta-like 4 (Drosophila)	protein-coding	0.040000	0.562189	
mm_120869.1	chr14	75230073	75230273	+	1	NA	NA	NA	-12114	NM_019775	56373	Mm.24242	NM_019775	ENSMUSG00000021999	Cpb2	1110032P04Rik|4930405E17Rik|AI255929|CPR|Cpu|TAFI	carboxypeptidase B2 (plasma)	protein-coding	0.010000	0.437811	-14(GCTTTTAGACAT,+,0.00)
mm_95599.1	chr11	53350783	53350983	+	1	NA	NA	NA	116	NM_033565	93736	Mm.395281	NM_033565	ENSMUSG00000049470	Aff4	AF5Q31|Alf4|Laf4l|MCEF	AF4/FMR2 family, member 4	protein-coding	0.155000	0.800995	
mm_58034.1	chr6	136722620	136722820	-	1	NA	NA	NA	59022	NM_145067	14917	Mm.222729	NM_145067	ENSMUSG00000042638	Gucy2c	AI893437|GC-C|Gcc	guanylate cyclase 2c	protein-coding	0.025000	0.447761	18(CACCTTTAAAGC,-,0.00),19(ACCTTTAAAGCG,+,0.00),20(CCTTTAAAGCGA,+,0.00)
mm_114165.1	chr13	55445238	55445438	+	1	NA	NA	NA	7	NM_001112711	26385	Mm.10193	NM_011938	ENSMUSG00000074886	Grk6	Gprk6	G protein-coupled receptor kinase 6	protein-coding	0.180000	0.796020	
mm_17922.1	chr2	35442067	35442267	-	1	NA	NA	NA	19282	NM_001308299	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.015000	0.522388	
mm_113248.1	chr13	27559191	27559391	+	1	NA	NA	NA	5315	NM_001316721	67310	Mm.46091	NM_023332	ENSMUSG00000006490	Prl8a9	1600019F10Rik|Ghd15|PLP-C2|PLP-Cbeta|Prlpc2	prolactin family8, subfamily a, member 9	protein-coding	0.010000	0.368159	
mm_45725.1	chr5	86065483	86065683	-	1	NA	NA	NA	0	NM_001345902	12617	Mm.4649	NM_007683	ENSMUSG00000029253	Cenpc1	CENP-C|Cenpc	centromere protein C1	protein-coding	0.075000	0.547264	0(GTCTTTAAAAAA,-,0.00)
mm_52252.1	chr6	106793390	106793590	+	1	NA	NA	NA	6597	NM_021449	58799	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.005000	0.427861	
mm_97499.1	chr11	78360654	78360854	+	1	NA	NA	NA	14044	NM_001313987	22248	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.010000	0.567164	
mm_53865.1	chr6	149325937	149326137	+	1	NA	NA	NA	16623	NM_001289662	67246	Mm.333515	NM_026054	ENSMUSG00000032712	2810474O19Rik	6720435I21Rik|AA536804|AU020969|GET|Kiaa1551	RIKEN cDNA 2810474O19 gene	protein-coding	0.005000	0.407960	
mm_121026.1	chr14	79702797	79702997	+	1	NA	NA	NA	-23	NR_045060	73989	Mm.107775	NR_045060		4930452G13Rik	-	RIKEN cDNA 4930452G13 gene	ncRNA	0.010000	0.517413	
mm_71323.1	chr8	44938076	44938276	+	1	NA	NA	NA	-12032	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.170000	0.776119	
mm_87342.1	chr10	43479249	43479449	+	1	NA	NA	NA	209	NM_199028	331623	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.165000	0.815920	
mm_61079.1	chr7	51621941	51622141	+	1	NA	NA	NA	211	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.045000	0.542289	
mm_4541.1	chr1	176874305	176874505	+	1	NA	NA	NA	-38272	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0.000000	0.437811	
mm_107571.1	chr12	44328818	44329018	+	1	NA	NA	NA	33	NM_001146031	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.160000	0.736318	
mm_53201.1	chr6	125584323	125584523	+	1	NA	NA	NA	31475	NM_011708	22371	Mm.22339	NM_011708	ENSMUSG00000001930	Vwf	6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD	Von Willebrand factor	protein-coding	0.045000	0.611940	
mm_54610.1	chr6	38350544	38350744	-	1	NA	NA	NA	3959	NM_028864	78781	Mm.25243	NM_028421	ENSMUSG00000029826	Zc3hav1	1200014N16Rik|2900058M19Rik|9130009D18Rik|9830115L13Rik|ARTD13|D6Bwg1452e|ZAP	zinc finger CCCH type, antiviral 1	protein-coding	0.010000	0.368159	
mm_84712.1	chr9	73039611	73039811	-	1	NA	NA	NA	-7	NM_001308425	66364	Mm.392089	NM_001308425		2310009A05Rik	5031420N21Rik	RIKEN cDNA 2310009A05 gene	protein-coding	0.070000	0.597015	
mm_168858.1	chr12	27423629	27423829	-	1	NA	NA	NA	-81011	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.030000	0.482587	
mm_92792.1	chr10	81346636	81346836	-	1	NA	NA	NA	-3470	NM_148951	209047	Mm.218755	NM_148951	ENSMUSG00000034872	Gipc3	Ahl5|Rgs19ip3	GIPC PDZ domain containing family, member 3	protein-coding	0.080000	0.666667	
mm_107422.1	chr12	35047158	35047358	+	1	NA	NA	NA	69	NM_001014973	217463	Mm.213991	NM_001014973	ENSMUSG00000020590	Snx13	Rgs-px1|mKIAA0713	sorting nexin 13	protein-coding	0.145000	0.711443	
mm_87161.1	chr10	36974446	36974646	+	1	NA	NA	NA	2	NM_008229	15182	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.145000	0.781095	
mm_140218.1	chr17	83846537	83846737	+	1	NA	NA	NA	153	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.040000	0.567164	
mm_64072.1	chr7	140905970	140906170	+	1	NA	NA	NA	6	NR_015583	212965	Mm.387212	NR_015583	ENSMUSG00000109628	BC024386	BC039766	cDNA sequence BC023486	ncRNA	0.005000	0.422886	
mm_37655.1	chr4	128806400	128806600	-	1	NA	NA	NA	-388	NM_001081098	230761	Mm.22616	NM_001081098	ENSMUSG00000028799	Zfp362	-	zinc finger protein 362	protein-coding	0.165000	0.820896	
mm_4779.1	chr1	182965374	182965574	+	1	NA	NA	NA	10686	NM_016928	53791	Mm.116894	NM_016928	ENSMUSG00000079164	Tlr5	-	toll-like receptor 5	protein-coding	0.010000	0.358209	
mm_139402.1	chr17	52348624	52348824	+	1	NA	NA	NA	-253985	NM_001031811	211468	Mm.399068	NM_001031811	ENSMUSG00000035580	Kcnh8	C130090D05Rik|ELK|ELK1|ELK3|Kv12.1	potassium voltage-gated channel, subfamily H (eag-related), member 8	protein-coding	0.025000	0.477612	
mm_96392.1	chr11	67249909	67250109	+	1	NA	NA	NA	12197	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.015000	0.517413	
mm_109764.1	chr12	118239465	118239665	+	1	NA	NA	NA	-40522	NM_010060	13411	Mm.390540	NM_010060	ENSMUSG00000018581	Dnah11	Dnahc11|b2b1203Clo|b2b1279Clo|b2b1289Clo|b2b1727Clo|b2b598Clo|iv|lrd	dynein, axonemal, heavy chain 11	protein-coding	0.000000	0.398010	-34(TGGTATAAAAGT,-,0.00)
mm_171302.1	chr3	93729628	93729828	-	1	NA	NA	NA	-53445	NM_148949	207213	Mm.425165	NM_148949	ENSMUSG00000094084	Tdpoz1	2cpoz56|Mapp2|Spopl1	TD and POZ domain containing 1	protein-coding	0.005000	0.437811	-36(GCCTATATAAAC,-,0.00)
mm_65741.1	chr7	28436207	28436407	-	1	NA	NA	NA	-116	NM_175021	233033	Mm.54120	NM_175021	ENSMUSG00000109336	Samd4b	BC042901	sterile alpha motif domain containing 4B	protein-coding	0.155000	0.786070	
mm_50390.1	chr6	48706441	48706641	+	1	NA	NA	NA	1703	NM_153175	231931	Mm.321047	NM_153175	ENSMUSG00000047867	Gimap6	4833419H03Rik|Ian6|mFLJ00102	GTPase, IMAP family member 6	protein-coding	0.010000	0.432836	
mm_73493.1	chr8	107095842	107096042	+	1	NA	NA	NA	164	NR_106043	102465652		NR_106043	ENSMUSG00000098671	Mir7075	Gm27821|mmu-mir-7075	microRNA 7075	ncRNA	0.045000	0.457711	
mm_89888.1	chr10	108716466	108716666	+	1	NA	NA	NA	-16406	NM_203660	368203	Mm.452758	NM_203660		Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding	0.000000	0.442786	
mm_14778.1	chr2	145822481	145822681	+	1	NA	NA	NA	36465	NM_028724	74030	Mm.228799	NM_028724	ENSMUSG00000001768	Rin2	2010003K16Rik|4632403N06Rik|AW821980|RASSF4	Ras and Rab interactor 2	protein-coding	0.020000	0.457711	
mm_47606.1	chr5	125081206	125081406	-	1	NA	NA	NA	77831	NM_028443	73121	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.040000	0.646766	
mm_123633.1	chr14	68533644	68533844	-	1	NA	NA	NA	-55	NM_007402	11500	Mm.261495	NM_007402	ENSMUSG00000022056	Adam7	ADAM 7|EAP1|EAPI	a disintegrin and metallopeptidase domain 7	protein-coding	0.005000	0.477612	
mm_6369.1	chr1	72255588	72255788	-	1	NA	NA	NA	28626	NM_023523	111175	Mm.281738	NM_023523	ENSMUSG00000026189	Pecr	2400003B18Rik|TERP	peroxisomal trans-2-enoyl-CoA reductase	protein-coding	0.020000	0.477612	
mm_97664.1	chr11	79660447	79660647	+	1	NA	NA	NA	14539	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	0.095000	0.741294	
mm_5.1	chr1	4771008	4771208	+	1	NA	NA	NA	14618	NR_033530	27395	Mm.182927	NM_025300	ENSMUSG00000033845	Mrpl15	HSPC145|MRP-L7|Rpml7	mitochondrial ribosomal protein L15	protein-coding	0.055000	0.522388	
mm_165349.1	chr2	119826276	119826476	-	1	NA	NA	NA	26862	NM_019392	22174	Mm.2901	NM_019392	ENSMUSG00000027298	Tyro3	AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1	TYRO3 protein tyrosine kinase 3	protein-coding	0.000000	0.422886	
mm_146411.1	chr18	84088131	84088331	+	1	NA	NA	NA	73	NM_146090	225791	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.095000	0.691542	
mm_66959.1	chr7	62423302	62423502	-	1	NA	NA	NA	-3263	NM_011746	22652	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	0.015000	0.517413	-59(GGCTTGAAAAGA,-,0.00)
mm_137568.1	chr17	27839988	27840188	+	1	NA	NA	NA	1	NM_011432	20630	Mm.103949	NM_011432	ENSMUSG00000024217	Snrpc	Snrp1c|U1-C|U1C	U1 small nuclear ribonucleoprotein C	protein-coding	0.070000	0.631841	
mm_112809.1	chr13	20794096	20794296	+	1	NA	NA	NA	83	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.477612	
mm_52921.1	chr6	122874450	122874650	+	1	NA	NA	NA	-7	NM_026267	67602	Mm.288114	NM_026267	ENSMUSG00000030327	Necap1	1200016B17Rik|AI747569|mFLJ00061	NECAP endocytosis associated 1	protein-coding	0.130000	0.681592	
mm_158985.1	chr1	132191285	132191485	+	1	NA	NA	NA	-51	NM_001311104	213409	Mm.426321	NM_001033250	ENSMUSG00000079330	Lemd1	4930540I23Rik|6430514M23Rik|AI428128|LEMP-1	LEM domain containing 1	protein-coding	0.060000	0.552239	
mm_60341.1	chr7	44351660	44351860	+	1	NA	NA	NA	23270	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.060000	0.661692	
mm_126898.1	chr15	89523625	89523825	+	1	NA	NA	NA	23868	NM_021423	58234	Mm.146855	NM_021423	ENSMUSG00000022623	Shank3	AI841104|SHANK3c-3|SHANK3c-4|Shank3b	SH3/ankyrin domain gene 3	protein-coding	0.185000	0.855721	
mm_76875.1	chr8	105565870	105566070	-	1	NA	NA	NA	70	NM_013477	11972	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0.115000	0.691542	
mm_78301.1	chr9	22475680	22475880	+	1	NA	NA	NA	65	NM_178415	319845	Mm.176725	NM_178415	ENSMUSG00000035919	Bbs9	E130103I17Rik	Bardet-Biedl syndrome 9 (human)	protein-coding	0.045000	0.562189	
mm_41875.1	chr5	104609313	104609513	+	1	NA	NA	NA	37741	NM_001346671	69623	Mm.69919	NM_027142		Zfp33b	2310012P17Rik	zinc finger protein 33B	protein-coding	0.020000	0.467662	
mm_102941.1	chr11	69602721	69602921	-	1	NA	NA	NA	3139	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.035000	0.552239	
mm_115484.1	chr13	3610168	3610368	-	1	NA	NA	NA	840	NM_134063	105203	Mm.221609	NM_134063	ENSMUSG00000033799	Fam208b	AI645998|Pap20|mKIAA2006	family with sequence similarity 208, member B	protein-coding	0.055000	0.537313	
mm_37115.1	chr4	116651299	116651499	-	1	NA	NA	NA	275	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.055000	0.611940	
mm_67634.1	chr7	84372355	84372555	-	1	NA	NA	NA	37583	NM_007488	11864	Mm.38594	NM_007488	ENSMUSG00000015709	Arnt2	Hif-2b|bHLHe1|mKIAA0307	aryl hydrocarbon receptor nuclear translocator 2	protein-coding	0.015000	0.457711	
mm_57635.1	chr6	128355741	128355941	-	1	NA	NA	NA	10	NM_011657	22158	Mm.291783	NM_011657	ENSMUSG00000001521	Tulp3	2310022L06Rik|AI316887	tubby-like protein 3	protein-coding	0.120000	0.721393	
mm_121241.1	chr14	103056173	103056373	+	1	NA	NA	NA	9261	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.005000	0.368159	
mm_21957.1	chr2	167188733	167188933	-	1	NA	NA	NA	-15	NM_008420	16500	Mm.205341	NM_008420	ENSMUSG00000050556	Kcnb1	Kcr1-1|Kv2.1|Shab	potassium voltage gated channel, Shab-related subfamily, member 1	protein-coding	0.095000	0.706468	
mm_63476.1	chr7	127712627	127712827	+	1	NA	NA	NA	-9	NM_007795	13019	Mm.389954	NM_007795	ENSMUSG00000042340	Ctf1	CT-1	cardiotrophin 1	protein-coding	0.025000	0.592040	
mm_98578.1	chr11	95712907	95713107	+	1	NA	NA	NA	-253	NR_045780	432396	Mm.426849	NR_045780	ENSMUSG00000086191	Zfp652os	1110035M17Rik	zinc finger protein 652, opposite strand	ncRNA	0.185000	0.805970	
mm_70591.1	chr8	13174494	13174694	+	1	NA	NA	NA	14504	NR_035494	100316713		NR_035494	ENSMUSG00000088054	Mir1968	mir-1968|mmu-mir-1968	microRNA 1968	ncRNA	0.015000	0.502488	
mm_150466.1	chr19	38395921	38396121	+	1	NA	NA	NA	41	NM_175507	240660	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	0.180000	0.820896	
mm_161776.1	chr17	37671797	37671997	+	1	NA	NA	NA	-128	NM_213721	404308	Mm.484787	NM_213721	ENSMUSG00000080990	Olfr118	MOR263-13	olfactory receptor 118	protein-coding	0.005000	0.328358	
mm_154809.1	chrX	13623474	13623674	+	1	NA	NA	NA	-9195	NM_011823	23890	Mm.487326	NM_011823	ENSMUSG00000040229	Gpr34	Lypsr1	G protein-coupled receptor 34	protein-coding	0.005000	0.402985	
mm_117828.1	chr13	98262883	98263083	-	1	NA	NA	NA	9	NM_178918	105372	Mm.28221	NM_178918	ENSMUSG00000041747	Utp15	AW544865	UTP15 small subunit processome component	protein-coding	0.105000	0.641791	
mm_50116.1	chr6	41534716	41534916	+	1	NA	NA	NA	13040	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.020000	0.497512	
mm_111339.1	chr12	86884371	86884571	-	1	NA	NA	NA	343	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.100000	0.691542	
mm_166505.1	chr6	4747347	4747547	+	1	NA	NA	NA	141	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.100000	0.646766	
mm_87300.1	chr10	42534816	42535016	+	1	NA	NA	NA	32862	NM_017472	54198	Mm.277870	NM_017472	ENSMUSG00000019804	Snx3	SDP3	sorting nexin 3	protein-coding	0.040000	0.532338	
mm_67481.1	chr7	80712093	80712293	-	1	NA	NA	NA	-23316	NM_173863	70461	Mm.392175	NM_173863	ENSMUSG00000030527	Crtc3	2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3	CREB regulated transcription coactivator 3	protein-coding	0.010000	0.398010	-7(TTTTTTAAAGAC,+,0.00)
mm_20841.1	chr2	148009185	148009385	-	1	NA	NA	NA	36179	NM_001291067	15376	Mm.938	NM_010446	ENSMUSG00000037025	Foxa2	HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b	forkhead box A2	protein-coding	0.005000	0.467662	
mm_85463.1	chr9	105495038	105495238	-	1	NA	NA	NA	-5	NM_001253836	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.165000	0.781095	
mm_118819.1	chr14	25529717	25529917	+	1	NA	NA	NA	-4622	NR_037236	100526533		NR_037236	ENSMUSG00000093081	Mir3075	mir-3075|mmu-mir-3075	microRNA 3075	ncRNA	0.010000	0.497512	
mm_170907.1	chr2	31141732	31141932	-	1	NA	NA	NA	176	NM_001177649	14269	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.115000	0.741294	
mm_25148.1	chr3	102748082	102748282	+	1	NA	NA	NA	-12765	NR_040588	78491	Mm.243766	NR_040588	ENSMUSG00000086745	Tspan2os	2410057H14Rik	tetraspanin 2, opposite strand	ncRNA	0.000000	0.398010	
mm_6421.1	chr1	73905291	73905491	-	1	NA	NA	NA	-40925	NR_045311	109198	Mm.359721	NR_045311	ENSMUSG00000100301	6030407O03Rik	-	RIKEN cDNA 6030407O03 gene	ncRNA	0.000000	0.577114	
mm_77894.1	chr9	7348120	7348320	+	1	NA	NA	NA	846	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.398010	86(CTCCTTAAAAAC,-,0.00),88(CCTTAAAAACCT,+,0.00)
mm_6258.1	chr1	69107952	69108152	-	1	NA	NA	NA	7	NM_010154	13869	Mm.442420	NM_010154	ENSMUSG00000062209	Erbb4	Her4|c-erbB-4	erb-b2 receptor tyrosine kinase 4	protein-coding	0.105000	0.626866	
mm_139424.1	chr17	53479433	53479633	+	1	NA	NA	NA	299	NM_025887	271457	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0.170000	0.800995	
mm_39929.1	chr5	31613864	31614064	+	1	NA	NA	NA	13	NM_025796	66845	Mm.120763	NM_025796	ENSMUSG00000106918	Mrpl33	0610009M10Rik|L33mt|MRP-L33	mitochondrial ribosomal protein L33	protein-coding	0.080000	0.626866	
mm_66258.1	chr7	35647303	35647503	-	1	NA	NA	NA	79	NM_019746	56330	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0.140000	0.706468	
mm_58348.1	chr6	147263870	147264070	-	1	NA	NA	NA	43	NM_008970	19227	Mm.28440	NM_008970	ENSMUSG00000048776	Pthlh	PLP|PTH-like|Pthrp	parathyroid hormone-like peptide	protein-coding	0.105000	0.656716	
mm_1633.1	chr1	74506016	74506216	+	1	NA	NA	NA	56	NM_021383	58184	Mm.291708	NM_021383	ENSMUSG00000026174	Cnot9	2610007F23Rik|AI593551|Fl10|Rqcd1	CCR4-NOT transcription complex, subunit 9	protein-coding	0.060000	0.542289	
mm_82764.1	chr9	26917090	26917290	-	1	NA	NA	NA	5891	NM_001281475	382064	Mm.335028	NM_001177509	ENSMUSG00000079644	Gm1110	-	predicted gene 1110	protein-coding	0.010000	0.462687	-7(TTTTTTAAAGTC,+,0.00)
mm_3845.1	chr1	160053763	160053963	+	1	NA	NA	NA	9483	NM_001162896	67647	Mm.171518	NM_001024470	ENSMUSG00000090394	4930523C07Rik	-	RIKEN cDNA 4930523C07 gene	protein-coding	0.015000	0.398010	-10(GCTTTTATACAG,+,0.00)
mm_100568.1	chr11	120730773	120730973	+	1	NA	NA	NA	1148	NM_007621	12409	Mm.21454	NM_007621	ENSMUSG00000025150	Cbr2	MLCR	carbonyl reductase 2	protein-coding	0.030000	0.582090	
mm_103690.1	chr11	79503920	79504120	-	1	NA	NA	NA	62	NM_019409	18377	Mm.93335	NM_019409	ENSMUSG00000049612	Omg	-	oligodendrocyte myelin glycoprotein	protein-coding	0.020000	0.502488	
mm_45777.1	chr5	87092456	87092656	-	1	NA	NA	NA	-1	NM_001029867	231396	Mm.439851	NM_001029867	ENSMUSG00000070704	Ugt2b36	-	UDP glucuronosyltransferase 2 family, polypeptide B36	protein-coding	0.000000	0.383085	
mm_10558.1	chr2	16776556	16776756	+	1	NA	NA	NA	237070	NR_040632	75069	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	0.005000	0.298507	8(CGGTATTTAAAG,-,0.00),10(GTATTTAAAGTC,+,0.00)
mm_78213.1	chr9	21504934	21505134	+	1	NA	NA	NA	4860	NM_001324510	17083	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.025000	0.497512	
mm_67086.1	chr7	68283716	68283916	-	1	NA	NA	NA	-7222	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.015000	0.472637	
mm_110593.1	chr12	56533506	56533706	-	1	NA	NA	NA	3302	NM_009385	21869	Mm.89972	NM_009385	ENSMUSG00000001496	Nkx2-1	AV026640|Nkx2.1|T/EBP|Titf1|Ttf-1	NK2 homeobox 1	protein-coding	0.090000	0.626866	
mm_56527.1	chr6	99521636	99521836	-	1	NA	NA	NA	-743	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.100000	0.661692	
mm_103789.1	chr11	82845785	82845985	-	1	NA	NA	NA	-16842	NM_026097	67338	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.040000	0.597015	
mm_2675.1	chr1	127228565	127228765	+	1	NA	NA	NA	23679	NM_145128	107895	Mm.214682	NM_145128	ENSMUSG00000036155	Mgat5	4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV	mannoside acetylglucosaminyltransferase 5	protein-coding	0.015000	0.502488	
mm_158443.1	chrX	140537673	140537873	-	1	NA	NA	NA	4895	NR_122039	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.020000	0.472637	76(ACTTTTATGGCT,+,0.00)
mm_150952.1	chr19	46328636	46328836	+	1	NA	NA	NA	552	NM_133694	68431	Mm.19973	NM_133694	ENSMUSG00000025226	Fbxl15	0710008C12Rik|Fbxo37	F-box and leucine-rich repeat protein 15	protein-coding	0.125000	0.711443	
mm_137800.1	chr17	29769252	29769452	+	1	NA	NA	NA	-52335	NM_001163741	68597	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	0.020000	0.577114	
mm_164101.1	chr15	20931247	20931447	+	1	NA	NA	NA	-180105	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.005000	0.348259	
mm_36936.1	chr4	108579081	108579281	-	1	NA	NA	NA	155	NM_172697	230596	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	0.060000	0.452736	
mm_53117.1	chr6	125096724	125096924	+	1	NA	NA	NA	-200	NR_106012	102466272		NR_106012	ENSMUSG00000098762	Mir7045	Gm27758|mmu-mir-7045	microRNA 7045	ncRNA	0.055000	0.706468	
mm_21475.1	chr2	161109097	161109297	-	1	NA	NA	NA	-111	NR_126509	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0.075000	0.587065	
mm_128930.1	chr15	74636242	74636442	-	1	NA	NA	NA	-24	NM_001177437	69439	Mm.263708	NM_001177437	ENSMUSG00000022603	Mroh4	1700016M24Rik	maestro heat-like repeat family member 4	protein-coding	0.005000	0.537313	
mm_170806.1	chr2	175800952	175801152	-	1	NA	NA	NA	-14	NM_001033123	13999		NM_001033123	ENSMUSG00000078889	Gm14288	OTTMUSG00000016199	predicted gene 14288	protein-coding	0.010000	0.492537	
mm_42491.1	chr5	115474447	115474647	+	1	NA	NA	NA	8281	NM_011107	18778	Mm.20190	NM_011107	ENSMUSG00000029522	Pla2g1b	Pla2a|sPLA2IB	phospholipase A2, group IB, pancreas	protein-coding	0.040000	0.492537	
mm_112400.1	chr13	3478148	3478348	+	1	NA	NA	NA	-55	NR_015522	76937	Mm.487240	NR_015522	ENSMUSG00000097709	2810429I04Rik	AI256682	RIKEN cDNA 2810429I04 gene	ncRNA	0.075000	0.661692	
mm_139133.1	chr17	47508197	47508397	+	1	NA	NA	NA	3246	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.015000	0.502488	-39(GACTTTTAAAGT,-,0.00)
mm_14918.1	chr2	150927190	150927390	+	1	NA	NA	NA	17696	NM_001163476	69270	Mm.271603	NM_027014	ENSMUSG00000027454	Gins1	2810418N01Rik|Gins4|PSF1|mKIAA0186	GINS complex subunit 1 (Psf1 homolog)	protein-coding	0.015000	0.427861	
mm_146541.1	chr18	5593813	5594013	-	1	NA	NA	NA	-1476	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	0.020000	0.422886	
mm_151353.1	chr19	55898183	55898383	+	1	NA	NA	NA	2962	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.010000	0.407960	59(CTGTATAAAGGG,-,0.00)
mm_136347.1	chr16	92646683	92646883	-	1	NA	NA	NA	50546	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.020000	0.398010	
mm_85683.1	chr9	107872697	107872897	-	1	NA	NA	NA	22	NM_011251	19654	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	0.120000	0.711443	
mm_17835.1	chr2	34311052	34311252	-	1	NA	NA	NA	60893	NM_001290576	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.000000	0.263682	
mm_109896.1	chr12	7681540	7681740	-	1	NA	NA	NA	-296037	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.338308	
mm_144241.1	chr18	10725492	10725692	+	1	NA	NA	NA	-33	NM_144860	225164	Mm.21500	NM_144860	ENSMUSG00000024294	Mib1	DIP-1|E430019M12Rik|Mib|mKIAA1323	mindbomb E3 ubiquitin protein ligase 1	protein-coding	0.115000	0.666667	
mm_86759.1	chr10	19621925	19622125	+	1	NA	NA	NA	-3	NM_178258	237310	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	0.010000	0.487562	
mm_55847.1	chr6	83362243	83362443	-	1	NA	NA	NA	12859	NM_175277	78653	Mm.391470	NM_175277	ENSMUSG00000045160	Bola3	1810056O20Rik	bolA-like 3 (E. coli)	protein-coding	0.005000	0.348259	
mm_95413.1	chr11	50025242	50025442	+	1	NA	NA	NA	11	NM_001290750	59044	Mm.359004	NM_021540	ENSMUSG00000020376	Rnf130	2510042A13Rik|G1RZFP|G1rp|GOLIATH|GP	ring finger protein 130	protein-coding	0.225000	0.865672	
mm_170038.1	chr17	23599004	23599204	-	1	NA	NA	NA	383	NM_011747	22654	Mm.40326	NM_011747	ENSMUSG00000062012	Zfp13	4933429B21|AI835008|Krox-8|Rhit|Zfp-13	zinc finger protein 13	protein-coding	0.035000	0.587065	
mm_83059.1	chr9	37545189	37545389	-	1	NA	NA	NA	6034	NM_020518	57276	Mm.27478	NM_020518	ENSMUSG00000001943	Vsig2	1190004B15Rik|2210413P10Rik|AU040484|CTX|Ctm	V-set and immunoglobulin domain containing 2	protein-coding	0.040000	0.611940	
mm_72327.1	chr8	78993157	78993357	+	1	NA	NA	NA	-35180	NM_001294279	622675	Mm.48724	NM_178267	ENSMUSG00000071064	Zfp827	2810449M09Rik|D630040G17Rik|Znf827	zinc finger protein 827	protein-coding	0.005000	0.273632	
mm_106439.1	chr11	119676859	119677059	-	1	NA	NA	NA	74054	NM_028898	74370	Mm.209933	NM_028898	ENSMUSG00000025583	Rptor	4932417H02Rik|Rap|Raptor|mKIAA1303	regulatory associated protein of MTOR, complex 1	protein-coding	0.010000	0.487562	
mm_118700.1	chr14	22158645	22158845	+	1	NA	NA	NA	139033	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.020000	0.517413	-75(CTGTATAAAAGG,-,0.00)
mm_76521.1	chr8	87472079	87472279	-	1	NA	NA	NA	413	NM_019626	12404	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0.070000	0.701493	
mm_160112.1	chr7	26061491	26061691	+	1	NA	NA	NA	96	NM_007813	13089	Mm.482696	NM_007813	ENSMUSG00000040583	Cyp2b13	-	cytochrome P450, family 2, subfamily b, polypeptide 13	protein-coding	0.010000	0.517413	
mm_90207.1	chr10	120616809	120617009	+	1	NA	NA	NA	-140440	NM_010441	15364	Mm.157190	NM_010441	ENSMUSG00000056758	Hmga2	9430083A20Rik|HMGI-C|Hmgic|pg|pygmy	high mobility group AT-hook 2	protein-coding	0.015000	0.457711	
mm_61995.1	chr7	91138204	91138404	+	1	NA	NA	NA	47518	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.005000	0.268657	
mm_144177.1	chr18	6764992	6765192	+	1	NA	NA	NA	-75	NM_181070	19330	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.065000	0.641791	
mm_165951.1	chr4	84675612	84675812	-	1	NA	NA	NA	-626	NM_172870	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.130000	0.731343	
mm_36881.1	chr4	107179221	107179421	-	1	NA	NA	NA	691	NM_029565	56374	Mm.291192	NM_029565	ENSMUSG00000028618	Tmem59	1110001M20Rik|3110046P06Rik|AI256529|D4Ertd20e|MTDCF1|ORF18	transmembrane protein 59	protein-coding	0.075000	0.587065	
mm_27826.1	chr3	79091827	79092027	-	1	NA	NA	NA	52960	NM_001310536	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.055000	0.512438	
mm_73408.1	chr8	105989649	105989849	+	1	NA	NA	NA	2024	NM_001301204	319446	Mm.248357	NM_176913	ENSMUSG00000053687	Dpep2	F630103D06Rik|MBD-2	dipeptidase 2	protein-coding	0.000000	0.388060	-83(GGGTTTAAAGGC,-,0.00)
mm_24100.1	chr3	88081924	88082124	+	1	NA	NA	NA	-27	NM_001033484	404710	Mm.331133	NM_001033484	ENSMUSG00000028068	Iqgap3	AI593484|D030034H08	IQ motif containing GTPase activating protein 3	protein-coding	0.085000	0.636816	
mm_27709.1	chr3	67515395	67515595	-	1	NA	NA	NA	28	NM_001164763	109222	Mm.38002	NM_001164763	ENSMUSG00000049404	Rarres1	5430417P09Rik|AI662122	retinoic acid receptor responder (tazarotene induced) 1	protein-coding	0.095000	0.721393	
mm_157922.1	chrX	78583792	78583992	-	1	NA	NA	NA	5	NM_001289683	546336	Mm.211712	NM_027322	ENSMUSG00000047996	Prrg1	2010007L08Rik	proline rich Gla (G-carboxyglutamic acid) 1	protein-coding	0.055000	0.646766	
mm_81155.1	chr9	107289869	107290069	+	1	NA	NA	NA	-92	NM_178907	102626	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0.050000	0.547264	
mm_142985.1	chr17	56287765	56287965	-	1	NA	NA	NA	2646	NM_025836	66905	Mm.311696	NM_025836	ENSMUSG00000024197	Plin3	1300012C15Rik|M6prbp1|Tip47	perilipin 3	protein-coding	0.010000	0.567164	
mm_61530.1	chr7	78920086	78920286	+	1	NA	NA	NA	5951	NM_001113527	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.020000	0.517413	
mm_100269.1	chr11	117654135	117654335	+	1	NA	NA	NA	-54	NM_198022	217351	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.160000	0.731343	
mm_41027.1	chr5	81800638	81800838	+	1	NA	NA	NA	323975	NR_138557	67327	Mm.87058	NR_138557		1700031L13Rik	-	RIKEN cDNA 1700031L13 gene	ncRNA	0.005000	0.288557	
mm_104317.1	chr11	93886407	93886607	-	1	NA	NA	NA	288	NM_134012	103537	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	0.090000	0.706468	
mm_82463.1	chr9	15710107	15710307	-	1	NA	NA	NA	438	NM_172289	234967	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.050000	0.601990	
mm_124715.1	chr15	6579598	6579798	+	1	NA	NA	NA	-149	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.025000	0.388060	
mm_88763.1	chr10	80334638	80334838	+	1	NA	NA	NA	4593	NM_139292	70335	Mm.28147	NM_139292	ENSMUSG00000035504	Reep6	0610011M24Rik|Dp1l1	receptor accessory protein 6	protein-coding	0.045000	0.577114	
mm_61244.1	chr7	65802939	65803139	+	1	NA	NA	NA	-1013	NR_045301	100503969	Mm.383527	NR_045301		1810008I18Rik	-	RIKEN cDNA 1810008I18 gene	ncRNA	0.025000	0.527363	
mm_6764.1	chr1	84105586	84105786	-	1	NA	NA	NA	113275	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.437811	
mm_38459.1	chr4	140581715	140581915	-	1	NA	NA	NA	66941	NM_001112723	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.035000	0.606965	
mm_98997.1	chr11	98795376	98795576	+	1	NA	NA	NA	-293	NM_028722	74026	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male-specific lethal 1 homolog (Drosophila)	protein-coding	0.110000	0.796020	
mm_156165.1	chrX	130048747	130048947	+	1	NA	NA	NA	299105	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.010000	0.402985	
mm_117505.1	chr13	78200288	78200488	-	1	NA	NA	NA	-1515	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.030000	0.472637	-98(CTCCATATAAGG,-,0.00),-96(CCATATAAGGCA,+,0.00)
mm_166153.1	chr5	10708928	10709128	+	1	NA	NA	NA	-156001	NR_003596	623849	Mm.335888	NR_003596	ENSMUSG00000091422	Gm6455	EG623849	predicted gene 6455	pseudo	0.000000	0.328358	
mm_117645.1	chr13	92610837	92611037	-	1	NA	NA	NA	-201	NM_172588	218442	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.080000	0.631841	
mm_141535.1	chr17	31855667	31855867	-	1	NA	NA	NA	25	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Msk|Sik|Snf1lk	salt inducible kinase 1	protein-coding	0.180000	0.825871	
mm_150899.1	chr19	45545262	45545462	+	1	NA	NA	NA	15202	NM_001330506	56626	Mm.46509	NM_020032	ENSMUSG00000025218	Poll	1110003P06Rik|AV007317	polymerase (DNA directed), lambda	protein-coding	0.015000	0.547264	
mm_127924.1	chr15	10229218	10229418	-	1	NA	NA	NA	5412	NM_001253781	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.010000	0.407960	
mm_23410.1	chr3	58502083	58502283	+	1	NA	NA	NA	-23638	NM_001005509	229317	Mm.21617	NM_001005509	ENSMUSG00000027810	Eif2a	D030048D22|D3Ertd194e	eukaryotic translation initiation factor 2A	protein-coding	0.005000	0.522388	-90(CCCTTTAAATAC,+,0.00),-90(CCCTTTAAATAC,-,0.00)
mm_147198.1	chr18	37864414	37864614	-	1	NA	NA	NA	-9854	NR_105945	102465592		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.000000	0.442786	36(CCTTTTATAGTG,+,0.00)
mm_129775.1	chr15	82792475	82792675	-	1	NA	NA	NA	1670	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.025000	0.472637	
mm_124247.1	chr14	101609050	101609250	-	1	NA	NA	NA	41	NM_001081278	210789	Mm.320639	NM_173380	ENSMUSG00000033083	Tbc1d4	5930406J04Rik|A930035N22|AV295684|As160	TBC1 domain family, member 4	protein-coding	0.065000	0.656716	
mm_155977.1	chrX	106126739	106126939	+	1	NA	NA	NA	-16436	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.020000	0.407960	
mm_1532.1	chr1	72849157	72849357	+	1	NA	NA	NA	23870	NM_001310659	16008	Mm.141936	NM_008342	ENSMUSG00000039323	Igfbp2	AI255832|IBP-2|Igfbp-2|mIGFBP-2	insulin-like growth factor binding protein 2	protein-coding	0.030000	0.621891	
mm_12662.1	chr2	75634516	75634716	+	1	NA	NA	NA	-24643	NM_146130	229279	Mm.316306	NM_053263	ENSMUSG00000059005	Hnrnpa3	2410013L13Rik|2610209F03Rik|2610510D13Rik|Hnrpa3	heterogeneous nuclear ribonucleoprotein A3	protein-coding	0.025000	0.497512	-31(TTCTATAAAAAC,-,0.00)
mm_33688.1	chr4	133415331	133415531	+	1	NA	NA	NA	45655	NR_039582	100628620		NR_039582	ENSMUSG00000092745	Mir5122	mmu-mir-5122|mu-mir-5122	microRNA 5122	ncRNA	0.060000	0.567164	
mm_22180.1	chr2	173216874	173217074	-	1	NA	NA	NA	1948	NM_021394	58203	Mm.116687	NM_021394	ENSMUSG00000027514	Zbp1	2010010H03Rik|Dai|Dlm1|mZaDLM	Z-DNA binding protein 1	protein-coding	0.020000	0.537313	
mm_52669.1	chr6	117906927	117907127	+	1	NA	NA	NA	245	NM_133834	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.110000	0.711443	
mm_130750.1	chr15	101266449	101266649	-	1	NA	NA	NA	-297	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.100000	0.592040	
mm_169200.1	chr13	66291395	66291595	+	1	NA	NA	NA	149623	NM_183119	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.020000	0.512438	
mm_150748.1	chr19	43788011	43788211	+	1	NA	NA	NA	5803	NM_013806	12780	Mm.39054	NM_013806	ENSMUSG00000025194	Abcc2	AI173996|Abc30|Cmoat|Mrp2|cMRP	ATP-binding cassette, sub-family C (CFTR/MRP), member 2	protein-coding	0.015000	0.393035	
mm_2664.1	chr1	126573837	126574037	+	1	NA	NA	NA	-81010	NM_172484	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.005000	0.477612	
mm_98418.1	chr11	94629688	94629888	+	1	NA	NA	NA	-36	NM_133807	98238	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	0.155000	0.776119	
mm_54029.1	chr6	11998249	11998449	-	1	NA	NA	NA	72468	NM_001168382	75725	Mm.212411	NM_029404	ENSMUSG00000029629	Phf14	1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783	PHD finger protein 14	protein-coding	0.010000	0.497512	
mm_169442.1	chr14	56811343	56811543	-	1	NA	NA	NA	21	NM_001253753	219105	Mm.473172	NM_144842	ENSMUSG00000040123	Zmym5	9830124H08Rik	zinc finger, MYM-type 5	protein-coding	0.125000	0.771144	
mm_148181.1	chr18	78205803	78206003	-	1	NA	NA	NA	537	NM_001110274	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.010000	0.492537	
mm_82350.1	chr9	13826918	13827118	-	1	NA	NA	NA	35	NR_037622	74360	Mm.157212	NM_026665	ENSMUSG00000031922	Cep57	3110002L15Rik|4921510P06Rik|4931428M20Rik|AI467480|Tsp57|mKIAA0092	centrosomal protein 57	protein-coding	0.100000	0.636816	
mm_51302.1	chr6	72309774	72309974	+	1	NA	NA	NA	5264	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.030000	0.641791	
mm_1977.1	chr1	86526741	86526941	+	1	NA	NA	NA	105	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.105000	0.641791	
mm_34466.1	chr4	148140703	148140903	+	1	NA	NA	NA	313	NM_027985	71890	Mm.9648	NM_027985	ENSMUSG00000029003	Mad2l2	2310033C13Rik|G1-453-4|MAD2B|REV7|repro22	MAD2 mitotic arrest deficient-like 2	protein-coding	0.065000	0.656716	
mm_57140.1	chr6	122609895	122610095	-	1	NA	NA	NA	92	NM_008108	14562	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0.030000	0.582090	
mm_39065.1	chr4	154042587	154042787	-	1	NA	NA	NA	-10	NM_001033455	381580	Mm.51001	NM_001033455	ENSMUSG00000039492	Ccdc27	Gm1035	coiled-coil domain containing 27	protein-coding	0.030000	0.517413	
mm_163136.1	chr11	79076534	79076734	-	1	NA	NA	NA	53037	NR_045873	790910	Mm.440410	NR_045873		Gm11201	ENSMUSG00000072637|OTTMUSG00000000169	predicted gene 11201	ncRNA	0.025000	0.567164	
mm_76812.1	chr8	104442811	104443011	-	1	NA	NA	NA	136	NM_001013380	234663	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	0.135000	0.751244	
mm_126286.1	chr15	79229355	79229555	+	1	NA	NA	NA	73	NM_001045558	18693	Mm.259464	NM_008837	ENSMUSG00000068206	Pick1	Prkcabp	protein interacting with C kinase 1	protein-coding	0.110000	0.716418	
mm_92441.1	chr10	77418153	77418353	-	1	NA	NA	NA	20	NM_130895	110532	Mm.276815	NM_130895	ENSMUSG00000020262	Adarb1	1700057H01Rik|AW124433|AW558573|Adar2|BB220382|D10Bwg0447e|Red1	adenosine deaminase, RNA-specific, B1	protein-coding	0.130000	0.781095	
mm_89837.1	chr10	106675714	106675914	+	1	NA	NA	NA	-73334	NR_131026	75833	Mm.159596	NR_131026		4930532I03Rik	-	RIKEN cDNA 4930532I03 gene	ncRNA	0.000000	0.517413	
mm_133317.1	chr16	77653611	77653811	+	1	NA	NA	NA	7438	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0.005000	0.283582	68(TAGTTTAAAAGA,-,0.00)
mm_169411.1	chr14	52075315	52075515	-	1	NA	NA	NA	6100	NR_028552	100217457		NR_028552	ENSMUSG00000064871	Snord58b	MBII-199	small nucleolar RNA, C/D box 58B	snoRNA	0.005000	0.437811	
mm_103273.1	chr11	72037455	72037655	-	1	NA	NA	NA	-46	NM_053245	114230	Mm.95707	NM_053245	ENSMUSG00000040554	Aipl1	A930007I01Rik	aryl hydrocarbon receptor-interacting protein-like 1	protein-coding	0.005000	0.547264	
mm_154097.1	chr19	57008081	57008281	-	1	NA	NA	NA	394	NM_146102	226250	Mm.226284	NM_146102	ENSMUSG00000025083	Afap1l2	AU041783|C86904|mKIAA1914	actin filament associated protein 1-like 2	protein-coding	0.115000	0.691542	
mm_114655.1	chr13	78024783	78024983	+	1	NA	NA	NA	-19	NM_029315	75507	Mm.443255	NM_029315	ENSMUSG00000093668	Pou5f2	1700013G10Rik|SPRM-1|Sprm1	POU domain class 5, transcription factor 2	protein-coding	0.040000	0.606965	
mm_97662.1	chr11	79653039	79653239	+	1	NA	NA	NA	21947	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	0.035000	0.557214	
mm_39662.1	chr5	25181361	25181561	+	1	NA	NA	NA	-19	NM_026449	67909	Mm.141471	NM_026449	ENSMUSG00000028938	Galntl5	1700021B12Rik|Galnt15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	protein-coding	0.000000	0.502488	
mm_99803.1	chr11	107993888	107994088	+	1	NA	NA	NA	-2860	NR_106082	102465705		NR_106082	ENSMUSG00000098989	Mir7223	Gm28009|mmu-mir-7223	microRNA 7223	ncRNA	0.005000	0.532338	
mm_72117.1	chr8	71676441	71676641	+	1	NA	NA	NA	158	NM_010589	16453	Mm.249645	NM_010589	ENSMUSG00000031805	Jak3	fae|wil	Janus kinase 3	protein-coding	0.105000	0.726368	
mm_131186.1	chr16	7217620	7217820	+	1	NA	NA	NA	147885	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.015000	0.547264	
mm_101378.1	chr11	23771105	23771305	-	1	NA	NA	NA	-235	NM_009044	19696	Mm.4869	NM_009044	ENSMUSG00000020275	Rel	c-Rel	reticuloendotheliosis oncogene	protein-coding	0.150000	0.716418	
mm_46828.1	chr5	113219444	113219644	-	1	NA	NA	NA	-7365	NM_001033428	333048	Mm.332586	NM_001033428	ENSMUSG00000066964	Tmem211	Gm854	transmembrane protein 211	protein-coding	0.015000	0.582090	
mm_5861.1	chr1	53773909	53774109	-	1	NA	NA	NA	11206	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.015000	0.368159	
mm_155954.1	chrX	105106261	105106461	+	1	NA	NA	NA	-14017	NM_053201	107528	Mm.24341	NM_053201	ENSMUSG00000031227	Magee1	AI847422|DAMAGE|mMage-e1	melanoma antigen, family E, 1	protein-coding	0.000000	0.358209	
mm_3853.1	chr1	160906388	160906588	+	1	NA	NA	NA	77	NM_001024952	381305	Mm.329667	NM_001024952	ENSMUSG00000040423	Rc3h1	5730557L09Rik|Gm551|N28103|mKIAA2025	RING CCCH (C3H) domains 1	protein-coding	0.105000	0.741294	
mm_100803.1	chr11	5061692	5061892	-	1	NA	NA	NA	3535	NM_144560	78926	Mm.44591	NM_030228	ENSMUSG00000034201	Gas2l1	4930500E24Rik|D0Jmb1|Gar22|TU-71.1	growth arrest-specific 2 like 1	protein-coding	0.070000	0.691542	
mm_109621.1	chr12	112764942	112765142	+	1	NA	NA	NA	4387	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.020000	0.537313	
mm_166066.1	chr4	134507508	134507708	+	1	NA	NA	NA	-3391	NM_001081099	69885	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	0.025000	0.542289	
mm_48386.1	chr5	139812901	139813101	-	1	NA	NA	NA	242	NM_144914	231832	Mm.482655	NM_144914	ENSMUSG00000036687	Tmem184a	Sdmg1	transmembrane protein 184a	protein-coding	0.055000	0.651741	
mm_37559.1	chr4	126168902	126169102	-	1	NA	NA	NA	-5661	NM_001162533	66938	Mm.29813	NM_025856	ENSMUSG00000073758	Sh3d21	1700029G01Rik|AU019788	SH3 domain containing 21	protein-coding	0.010000	0.437811	
mm_122952.1	chr14	54967864	54968064	-	1	NA	NA	NA	-823	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.005000	0.542289	
mm_19395.1	chr2	91629171	91629371	-	1	NA	NA	NA	7186	NM_010168	14061	Mm.89048	NM_010168	ENSMUSG00000027249	F2	Cf-2|Cf2|FII	coagulation factor II	protein-coding	0.020000	0.567164	
mm_22679.1	chr3	16183092	16183292	+	1	NA	NA	NA	9	NM_001145919	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH domain family 3	protein-coding	0.110000	0.721393	
mm_61681.1	chr7	80993915	80994115	+	1	NA	NA	NA	331	NM_178707	233410	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	8430405N24|A730014M16Rik|Znf592|mKIAA0211	zinc finger protein 592	protein-coding	0.145000	0.800995	
mm_115350.1	chr13	112673330	112673530	+	1	NA	NA	NA	12664	NM_178746	268706	Mm.40834	NM_175376	ENSMUSG00000047789	Slc38a9	4833412L08Rik|6720411P22Rik|9130023D20Rik|9430067K09Rik|A730092C09	solute carrier family 38, member 9	protein-coding	0.015000	0.368159	
mm_89369.1	chr10	88731276	88731476	+	1	NA	NA	NA	-38	NM_025859	104303	Mm.291247	NM_025859	ENSMUSG00000060904	Arl1	2310008D22Rik|AU019749	ADP-ribosylation factor-like 1	protein-coding	0.125000	0.681592	
mm_100921.1	chr11	6415570	6415770	-	1	NA	NA	NA	-200	NM_008907	268373	Mm.5246	NM_008907	ENSMUSG00000071866	Ppia	2700098C05|Cphn|CyP-18|CypA	peptidylprolyl isomerase A	protein-coding	0.145000	0.726368	
mm_154012.1	chr19	53143062	53143262	-	1	NA	NA	NA	406	NM_001164100	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.135000	0.766169	
mm_107063.1	chr12	16657874	16658074	+	1	NA	NA	NA	4504	NM_008747	18217	Mm.281715	NM_008747	ENSMUSG00000020591	Ntsr2	NT2R|NTRL	neurotensin receptor 2	protein-coding	0.005000	0.452736	-35(ACCCATTAAAAG,-,0.00),-33(CCATTAAAAGAC,+,0.00)
mm_68418.1	chr7	109703502	109703702	-	1	NA	NA	NA	-135	NM_020616	57373	Mm.334138	NM_020616	ENSMUSG00000031023	Akip1	BCA3|C11orf17|D7H11orf17|D930014E17Rik|ICRFP703B1614Q5.6|ORF27	A kinase (PRKA) interacting protein 1	protein-coding	0.120000	0.666667	
mm_40294.1	chr5	43515424	43515624	+	1	NA	NA	NA	-45	NM_001135172	109323	Mm.275553	NM_175425	ENSMUSG00000061535	C1qtnf7	5530401N20Rik|8430425G24Rik|Ctrp7	C1q and tumor necrosis factor related protein 7	protein-coding	0.030000	0.512438	
mm_145960.1	chr18	67774827	67775027	+	1	NA	NA	NA	51	NM_001039088	72124	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	0.180000	0.815920	
mm_79402.1	chr9	54956749	54956949	+	1	NA	NA	NA	-5895	NM_145229	246735	Mm.473773	NM_145229	ENSMUSG00000044820	AY074887	Mcpr1	cDNA sequence AY074887	protein-coding	0.020000	0.447761	
mm_11480.1	chr2	32385380	32385580	+	1	NA	NA	NA	2259	NM_008491	16819	Mm.9537	NM_008491	ENSMUSG00000026822	Lcn2	24p3|AW212229|NRL|Sip24	lipocalin 2	protein-coding	0.020000	0.542289	
mm_107154.1	chr12	24572192	24572392	+	1	NA	NA	NA	5	NM_001161406	195733	Mm.263068	NM_145890	ENSMUSG00000020656	Grhl1	LBP-32|MGR|Tcfcp2l2	grainyhead-like 1 (Drosophila)	protein-coding	0.145000	0.766169	
mm_157483.1	chrX	48208449	48208649	-	1	NA	NA	NA	153	NM_172465	208884	Mm.207367	NM_172465	ENSMUSG00000036985	Zdhhc9	6430508G22|9530098M12Rik	zinc finger, DHHC domain containing 9	protein-coding	0.040000	0.641791	
mm_88464.1	chr10	77564662	77564862	+	1	NA	NA	NA	-17005	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.020000	0.552239	
mm_28037.1	chr3	83789883	83790083	-	1	NA	NA	NA	23662	NM_009144	20319	Mm.19155	NM_009144	ENSMUSG00000027996	Sfrp2	AI851596|Sdf5	secreted frizzled-related protein 2	protein-coding	0.085000	0.666667	
mm_76606.1	chr8	90816938	90817138	-	1	NA	NA	NA	-11797	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.005000	0.522388	
mm_2109.1	chr1	87835433	87835633	+	1	NA	NA	NA	-17754	NM_177646	227333	Mm.277217	NM_177646	ENSMUSG00000070738	Dgkd	AI841987|D330025K09|DGKdelta|dgkd-2	diacylglycerol kinase, delta	protein-coding	0.000000	0.388060	49(TTCCTTTTAAGG,-,0.00),51(CCTTTTAAGGAC,+,0.00)
mm_143210.1	chr17	62881203	62881403	-	1	NA	NA	NA	14	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.090000	0.611940	
mm_26999.1	chr3	25835200	25835400	-	1	NA	NA	NA	318007	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.383085	
mm_2846.1	chr1	131638391	131638591	+	1	NA	NA	NA	177	NM_007799	13034	Mm.230249	NM_007799	ENSMUSG00000004552	Ctse	A430072O03Rik|C920004C08Rik|CE|CatE	cathepsin E	protein-coding	0.025000	0.407960	
mm_101537.1	chr11	33513628	33513828	-	1	NA	NA	NA	18	NR_110973	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.170000	0.825871	
mm_67200.1	chr7	74284280	74284480	-	1	NA	NA	NA	270400	NM_023908	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.025000	0.472637	
mm_1267.1	chr1	63200487	63200687	+	1	NA	NA	NA	229	NM_001285936	73884	Mm.86986	NM_028673	ENSMUSG00000027520	Zdbf2	4930431J08Rik|9330107J05Rik	zinc finger, DBF-type containing 2	protein-coding	0.040000	0.482587	
mm_59925.1	chr7	30423180	30423380	+	1	NA	NA	NA	-24	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.050000	0.572139	
mm_108124.1	chr12	75960291	75960491	+	1	NA	NA	NA	51288	NR_039560	100628610		NR_039560	ENSMUSG00000092922	Mir5101	mmu-mir-5101|mu-mir-5101	microRNA 5101	ncRNA	0.025000	0.512438	
mm_82380.1	chr9	14634208	14634408	-	1	NA	NA	NA	-19308	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.055000	0.616915	
mm_92918.1	chr10	84398561	84398761	-	1	NA	NA	NA	41810	NM_001004363	77976	Mm.25874	NM_001004363	ENSMUSG00000020032	Nuak1	AU014801|AW494241|B230104P22Rik|Omphk1	NUAK family, SNF1-like kinase, 1	protein-coding	0.005000	0.522388	
mm_169744.1	chr15	86195044	86195244	+	1	NA	NA	NA	-9003	NM_145475	223753	Mm.222685	NM_145475	ENSMUSG00000035891	Cerk	AI848610|D330016D08Rik|mKIAA1646	ceramide kinase	protein-coding	0.075000	0.552239	28(AACTTTAAATGG,-,0.00)
mm_98300.1	chr11	90030599	90030799	+	1	NA	NA	NA	351	NM_026433	67888	Mm.212428	NM_026433	ENSMUSG00000069763	Tmem100	1810057C19Rik|AV011897	transmembrane protein 100	protein-coding	0.035000	0.507463	-86(GTCCCTTAATGG,-,0.00),-84(CCCTTAATGGTC,+,0.00)
mm_29507.1	chr3	116252687	116252887	-	1	NA	NA	NA	697	NM_022427	64378	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.040000	0.577114	
mm_158244.1	chrX	106840442	106840642	-	1	NA	NA	NA	101	NM_199468	213436	Mm.85581	NM_199468	ENSMUSG00000047686	Zcchc5	D430021I08Rik|Gm375|Mar3|Mart3|ZHC5	zinc finger, CCHC domain containing 5	protein-coding	0.020000	0.457711	54(ATCTCTAAATGG,-,0.00)
mm_121312.1	chr14	106194241	106194441	+	1	NA	NA	NA	88143	NR_073203	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0.005000	0.567164	
mm_44411.1	chr5	17849689	17849889	-	1	NA	NA	NA	3	NM_001159557	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.000000	0.462687	
mm_24481.1	chr3	92012345	92012545	+	1	NA	NA	NA	-2138	NM_207247	242100	Mm.297406	NM_207247	ENSMUSG00000042244	Pglyrp3	Gm420	peptidoglycan recognition protein 3	protein-coding	0.005000	0.522388	
mm_130025.1	chr15	88891367	88891567	-	1	NA	NA	NA	29273	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.040000	0.542289	
mm_81395.1	chr9	108989843	108990043	+	1	NA	NA	NA	-1959	NM_173019	270198	Mm.132391	NM_173019	ENSMUSG00000025648	Pfkfb4	C230090D14	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4	protein-coding	0.005000	0.557214	
mm_56845.1	chr6	117906398	117906598	-	1	NA	NA	NA	-284	NM_001166431	98758	Mm.422979	NM_133834	ENSMUSG00000042079	Hnrnpf	4833420I20Rik|AA407306|Hnrpf	heterogeneous nuclear ribonucleoprotein F	protein-coding	0.055000	0.592040	-33(GTCCATAAAGAG,-,0.00),-31(CCATAAAGAGAC,+,0.00)
mm_18580.1	chr2	66125037	66125237	-	1	NA	NA	NA	-344	NM_015736	14425	Mm.439760	NM_015736	ENSMUSG00000026994	Galnt3	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	protein-coding	0.060000	0.616915	
mm_116861.1	chr13	54766402	54766602	-	1	NA	NA	NA	-62	NM_033610	104069	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	0.075000	0.701493	
mm_88060.1	chr10	67571968	67572168	+	1	NA	NA	NA	-23113	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.020000	0.502488	
mm_134981.1	chr16	32079219	32079419	-	1	NA	NA	NA	23	NM_177326	224105	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 protein (Cdc42/Rac)-activated kinase 2	protein-coding	0.115000	0.761194	
mm_169701.1	chr15	75086730	75086930	+	1	NA	NA	NA	25119	NM_001099217	100041546	Mm.482110	NM_001099217	ENSMUSG00000022584	Ly6c2	Ly-6C.2|Ly-6C2	lymphocyte antigen 6 complex, locus C2	protein-coding	0.020000	0.517413	
mm_150240.1	chr19	34085078	34085278	+	1	NA	NA	NA	-15765	NM_023903	78753	Mm.195937	NM_023903	ENSMUSG00000056078	Lipm	4632427C23Rik|AW227514|Lipl3	lipase, family member M	protein-coding	0.005000	0.398010	
mm_83008.1	chr9	36760186	36760386	-	1	NA	NA	NA	7292	NM_008408	16430	Mm.2863	NM_008408	ENSMUSG00000032116	Stt3a	AA408947|BB081708|Itm1	STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)	protein-coding	0.010000	0.333333	
mm_159057.1	chr1	193167953	193168153	+	1	NA	NA	NA	-5416	NM_001160360	319266	Mm.482460	NM_181048	ENSMUSG00000079144	A130010J15Rik	-	RIKEN cDNA A130010J15 gene	protein-coding	0.010000	0.452736	
mm_3643.1	chr1	152902759	152902959	+	1	NA	NA	NA	-213	NM_001005507	226517	Mm.270775	NM_001005507	ENSMUSG00000042772	Smg7	9430023P16Rik|mKIAA0250	Smg-7 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.115000	0.691542	
mm_57443.1	chr6	124965331	124965531	-	1	NA	NA	NA	-34	NM_012003	26894	Mm.244536	NM_012003	ENSMUSG00000030127	Cops7a	D6Ertd35e	COP9 signalosome subunit 7A	protein-coding	0.115000	0.741294	
mm_14934.1	chr2	151542594	151542794	+	1	NA	NA	NA	211	NM_001302078	14225	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.145000	0.731343	
mm_168841.1	chr12	23427079	23427279	-	1	NA	NA	NA	-416936	NR_015504	69732	Mm.391403	NM_028362	ENSMUSG00000073164	2410018L13Rik	2810480C08Rik	RIKEN cDNA 2410018L13 gene	ncRNA	0.120000	0.741294	
mm_86279.1	chr9	121839363	121839563	-	1	NA	NA	NA	-2	NM_028384	100502861	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	0.105000	0.651741	-93(ACCTTTAGAGGC,+,0.00)
mm_43639.1	chr5	138229774	138229974	+	1	NA	NA	NA	3970	NM_001013773	381680	Mm.156846	NM_001013773	ENSMUSG00000047592	Nxpe5	-	neurexophilin and PC-esterase domain family, member 5	protein-coding	0.005000	0.427861	
mm_90781.1	chr10	6980294	6980494	-	1	NA	NA	NA	71	NM_001170800	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.015000	0.437811	
mm_133966.1	chr16	4213873	4214073	-	1	NA	NA	NA	-569	NM_001025432	12914	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0.105000	0.621891	
mm_103848.1	chr11	83079769	83079969	-	1	NA	NA	NA	14757	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.020000	0.467662	
mm_169769.1	chr15	99874574	99874774	-	1	NA	NA	NA	782	NM_001113545	65970	Mm.33207	NM_023063	ENSMUSG00000023022	Lima1	Eplin	LIM domain and actin binding 1	protein-coding	0.015000	0.447761	
mm_156118.1	chrX	114904910	114905110	+	1	NA	NA	NA	-2	NM_001276396	237009	Mm.302216	NM_207241	ENSMUSG00000050435	Ube2dnl1	Ube2dnl	ubiquitin-conjugating enzyme E2D N-terminal like 1	protein-coding	0.005000	0.462687	-42(CTCTTTAAAGGT,+,0.00)
mm_99313.1	chr11	101377210	101377410	+	1	NA	NA	NA	9594	NM_008061	14377	Mm.18064	NM_008061	ENSMUSG00000078650	G6pc	AW107337|G6Pase|G6pt|Glc-6-Pase	glucose-6-phosphatase, catalytic	protein-coding	0.015000	0.402985	
mm_114037.1	chr13	53184408	53184608	+	1	NA	NA	NA	101601	NM_013846	26564	Mm.342774	NM_013846	ENSMUSG00000021464	Ror2	Ntrkr2|mRor2	receptor tyrosine kinase-like orphan receptor 2	protein-coding	0.015000	0.507463	
mm_140665.1	chr17	12909833	12910033	-	1	NA	NA	NA	67	NM_001034866	240023	Mm.242315	NM_001034866	ENSMUSG00000073460	Pnldc1	Gm313	poly(A)-specific ribonuclease (PARN)-like domain containing 1	protein-coding	0.105000	0.656716	-52(GCTTTAAGGCCC,+,0.00)
mm_133878.1	chr16	96467617	96467817	+	1	NA	NA	NA	111	NM_008791	18546	Mm.5023	NM_008791	ENSMUSG00000090223	Pcp4	P16Rimb19|Pcp-4|Pep19	Purkinje cell protein 4	protein-coding	0.015000	0.562189	-32(CTCTTTTTAAGA,-,0.00)
mm_138871.1	chr17	43087668	43087868	+	1	NA	NA	NA	70523	NR_045155	545207	Mm.329050	NR_045153		E130008D07Rik	-	RIKEN cDNA E130008D07 gene	ncRNA	0.030000	0.592040	
mm_68112.1	chr7	102072313	102072513	-	1	NA	NA	NA	1194	NM_011644	102443351	Mm.292904	NM_011644	ENSMUSG00000070425	Xntrpc	Xndr-trpc2	Xndc1-transient receptor potential cation channel, subfamily C, member 2 readthrough	protein-coding	0.005000	0.452736	
mm_21663.1	chr2	164425161	164425361	-	1	NA	NA	NA	17927	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.005000	0.338308	53(CTATTTATAGCT,+,0.00)
mm_77934.1	chr9	7354713	7354913	+	1	NA	NA	NA	7439	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.005000	0.388060	31(TCCTTTTTAAAG,-,0.00),32(CCTTTTTAAAGG,-,0.00),33(CTTTTTAAAGGT,+,0.00)
mm_172115.1	chr6	3200907	3201107	+	1	NA	NA	NA	-87512	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.045000	0.497512	
mm_133754.1	chr16	94426091	94426291	+	1	NA	NA	NA	-55176	NM_001159617	56176	Mm.474449	NM_019543	ENSMUSG00000022940	Pigp	Dcrc|Dscr5	phosphatidylinositol glycan anchor biosynthesis, class P	protein-coding	0.005000	0.328358	
mm_155765.1	chrX	96168338	96168538	+	1	NA	NA	NA	-71488	NR_030718	100038363	Mm.30815	NR_030718	ENSMUSG00000078122	F630028O10Rik	ENSMUSG00000065522|Gm14924|OTTMUSG00000018496|mir-223	RIKEN cDNA F630028O10 gene	ncRNA	0.000000	0.378109	
mm_32120.1	chr4	99031195	99031395	+	1	NA	NA	NA	341	NM_013913	30924	Mm.28341	NM_013913	ENSMUSG00000028553	Angptl3	hypl	angiopoietin-like 3	protein-coding	0.015000	0.373134	-49(CTTTTTATGACC,+,0.00)
mm_163218.1	chr11	101376217	101376417	+	1	NA	NA	NA	8601	NM_008061	14377	Mm.18064	NM_008061	ENSMUSG00000078650	G6pc	AW107337|G6Pase|G6pt|Glc-6-Pase	glucose-6-phosphatase, catalytic	protein-coding	0.030000	0.512438	
mm_54868.1	chr6	42597616	42597816	-	1	NA	NA	NA	-344	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.015000	0.407960	
mm_34774.1	chr4	153975026	153975226	+	1	NA	NA	NA	-45	NM_007859	13368	Mm.388918	NM_007859	ENSMUSG00000029027	Dffb	40kDa|5730477D02Rik|CAD|CPAN|DFF40|Didff	DNA fragmentation factor, beta subunit	protein-coding	0.125000	0.676617	
mm_123901.1	chr14	73180692	73180892	-	1	NA	NA	NA	26059	NR_030459	751541		NR_030459	ENSMUSG00000076121	Mir687	Mirn687|mir-687|mmu-mir-687	microRNA 687	ncRNA	0.010000	0.492537	
mm_137695.1	chr17	28970786	28970986	+	1	NA	NA	NA	17670	NM_025888	66989	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	0.010000	0.373134	
mm_31346.1	chr4	46576702	46576902	+	1	NA	NA	NA	-10362	NM_178893	107684	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.010000	0.432836	
mm_96357.1	chr11	67052575	67052775	+	1	NA	NA	NA	5	NM_001040026	52892	Mm.129731	NM_001040026	ENSMUSG00000069844	Sco1	2610001C07Rik|D11Bwg1310e	SCO1 cytochrome c oxidase assembly protein	protein-coding	0.090000	0.636816	
mm_69222.1	chr7	127588172	127588372	-	1	NA	NA	NA	323	NM_001033040	233899	Mm.25220	NM_001033040	ENSMUSG00000057176	Ccdc189	Gm166	coiled-coil domain containing 189	protein-coding	0.055000	0.517413	
mm_28049.1	chr3	84040183	84040383	-	1	NA	NA	NA	-122	NM_172681	229473	Mm.28838	NM_172681	ENSMUSG00000033767	D930015E06Rik	Kiaa0922|mKIAA0922	RIKEN cDNA D930015E06 gene	protein-coding	0.140000	0.761194	
mm_46438.1	chr5	105021803	105022003	-	1	NA	NA	NA	31658	NM_029509	76074	Mm.458519	NM_029509	ENSMUSG00000034438	Gbp8	5830443L24Rik|mGBP8	guanylate-binding protein 8	protein-coding	0.005000	0.298507	
mm_63288.1	chr7	126797357	126797557	+	1	NA	NA	NA	1721	NM_001177307	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.045000	0.577114	
mm_151591.1	chr19	3388547	3388747	-	1	NA	NA	NA	-210	NM_001039658	17771	Mm.209941	NM_010841	ENSMUSG00000024905	Mtl5	tesmin	metallothionein-like 5, testis-specific (tesmin)	protein-coding	0.010000	0.597015	
mm_90580.1	chr10	128268532	128268732	+	1	NA	NA	NA	635	NM_133997	103161	Mm.26513	NM_133997	ENSMUSG00000047631	Apof	AI255964	apolipoprotein F	protein-coding	0.005000	0.522388	
mm_152712.1	chr19	17372821	17373021	-	1	NA	NA	NA	-77	NM_010265	14537	Mm.244825	NM_010265	ENSMUSG00000038843	Gcnt1	5630400D21Rik|B130048E03|C2 GlcNAcT|C2GNT|IGnT	glucosaminyl (N-acetyl) transferase 1, core 2	protein-coding	0.010000	0.452736	
mm_106832.1	chr12	8004812	8005012	+	1	NA	NA	NA	27235	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.472637	
mm_18421.1	chr2	60750503	60750703	-	1	NA	NA	NA	-28000	NM_001159564	16420	Mm.98193	NM_021359	ENSMUSG00000026971	Itgb6	2210409C20Rik|4831415H04Rik	integrin beta 6	protein-coding	0.010000	0.393035	
mm_85173.1	chr9	96479432	96479632	-	1	NA	NA	NA	-857	NM_001311135	19823	Mm.28235	NM_011279	ENSMUSG00000051234	Rnf7	Rbx2|SAG	ring finger protein 7	protein-coding	0.005000	0.517413	
mm_154650.1	chrX	7822796	7822996	+	1	NA	NA	NA	-863	NM_008423	16506	Mm.335968	NM_008423	ENSMUSG00000009731	Kcnd1	1110037K09Rik|Kca2-1|Kv4.1|Shal|Shal1|mShal1	potassium voltage-gated channel, Shal-related family, member 1	protein-coding	0.020000	0.532338	
mm_10896.1	chr2	25265458	25265658	+	1	NA	NA	NA	2960	NM_175286	97031	Mm.308539	NM_175286	ENSMUSG00000048707	Tprn	C430004E15Rik|C87750	taperin	protein-coding	0.000000	0.472637	
mm_82738.1	chr9	25541330	25541530	-	1	NA	NA	NA	59833	NM_026189	67484	Mm.112977	NM_026189	ENSMUSG00000036611	Eepd1	2310005P05Rik|AI481005	endonuclease/exonuclease/phosphatase family domain containing 1	protein-coding	0.015000	0.492537	-86(GACCTTATATGG,-,0.00),-84(CCTTATATGGGC,+,0.00)
mm_95459.1	chr11	50377928	50378128	+	1	NA	NA	NA	309	NM_001347487	59013	Mm.21740	NM_021510	ENSMUSG00000007850	Hnrnph1	AI642080|E430005G16Rik|Hnrnph|Hnrph1	heterogeneous nuclear ribonucleoprotein H1	protein-coding	0.115000	0.686567	
mm_51476.1	chr6	83008824	83009024	+	1	NA	NA	NA	24547	NM_010070	13448	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.010000	0.467662	
mm_141595.1	chr17	32424060	32424260	-	1	NA	NA	NA	7	NM_001271476	57757	Mm.86752	NM_021319	ENSMUSG00000079563	Pglyrp2	C730002N09Rik|PGRP-L|Pglyrpl|tagL	peptidoglycan recognition protein 2	protein-coding	0.010000	0.512438	
mm_23314.1	chr3	53231631	53231831	+	1	NA	NA	NA	190184	NM_175386	108927	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968	lipoma HMGIC fusion partner	protein-coding	0.015000	0.512438	-86(GTGTTTTTAAGG,-,0.00),-84(GTTTTTAAGGAG,+,0.00)
mm_92595.1	chr10	80098445	80098645	-	1	NA	NA	NA	4157	NM_183426	216161	Mm.262102	NM_183426	ENSMUSG00000035673	Sbno2	BC019206|F730040C21|Sno|Stno	strawberry notch homolog 2 (Drosophila)	protein-coding	0.015000	0.547264	
mm_161979.1	chr19	16873726	16873926	-	1	NA	NA	NA	4	NM_008023	14240	Mm.7971	NM_008023	ENSMUSG00000056829	Foxb2	Fkh4	forkhead box B2	protein-coding	0.035000	0.582090	-18(GCTCAAAAAGCC,+,0.00)
mm_125168.1	chr15	31331927	31332127	+	1	NA	NA	NA	35732	NM_001164441	67434	Mm.102470	NM_026153	ENSMUSG00000022237	Ankrd33b	0610012A05Rik|3021401C12Rik|5730557B15Rik	ankyrin repeat domain 33B	protein-coding	0.005000	0.472637	
mm_104519.1	chr11	96065190	96065390	-	1	NA	NA	NA	74	NM_172300	268470	Mm.38802	NM_172300	ENSMUSG00000014349	Ube2z	AW049199|C030047H17Rik|D11Moh35	ubiquitin-conjugating enzyme E2Z	protein-coding	0.130000	0.751244	
mm_63335.1	chr7	126950720	126950920	+	1	NA	NA	NA	285	NM_001252566	233878	Mm.283926	NM_144926	ENSMUSG00000030683	Sez6l2	AI835913|AW121566|BSRP-A|Psk1	seizure related 6 homolog like 2	protein-coding	0.050000	0.582090	
mm_29178.1	chr3	106525379	106525579	-	1	NA	NA	NA	-22319	NM_001286986	67171	Mm.290488	NM_026013	ENSMUSG00000027900	Dram2	2010305N14Rik|2610318G18Rik|AI647667|Tmem77	DNA-damage regulated autophagy modulator 2	protein-coding	0.000000	0.368159	
mm_1776.1	chr1	78310296	78310496	+	1	NA	NA	NA	50	NM_001004173	433323	Mm.276248	NM_001004173	ENSMUSG00000032908	Sgpp2	SPPase2|Spp2	sphingosine-1-phosphate phosphotase 2	protein-coding	0.145000	0.741294	
mm_76061.1	chr8	77724818	77725018	-	1	NA	NA	NA	-466	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	0.005000	0.517413	
mm_2451.1	chr1	101155673	101155873	+	1	NA	NA	NA	5	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0.000000	0.457711	
mm_17047.1	chr2	20943334	20943534	-	1	NA	NA	NA	24287	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.020000	0.562189	
mm_168076.1	chr10	112699168	112699368	+	1	NA	NA	NA	-27658	NR_040579	69355	Mm.84337	NR_040579	ENSMUSG00000100314	1700010J16Rik	-	RIKEN cDNA 1700010J16 gene	ncRNA	0.055000	0.656716	
mm_88360.1	chr10	75936229	75936429	+	1	NA	NA	NA	756	NM_175329	103172	Mm.333849	NM_175329	ENSMUSG00000049422	Chchd10	1620401E04Rik|AI267078|Ndg2	coiled-coil-helix-coiled-coil-helix domain containing 10	protein-coding	0.070000	0.696517	
mm_131908.1	chr16	23269526	23269726	+	1	NA	NA	NA	-20844	NM_001252506	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.010000	0.512438	
mm_78551.1	chr9	35423299	35423499	+	1	NA	NA	NA	-28677	NM_021339	57810	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	0.015000	0.462687	
mm_119663.1	chr14	52279060	52279260	+	1	NA	NA	NA	14	NM_023434	268741	Mm.246237	NM_023434	ENSMUSG00000016831	Tox4	5730589K01Rik|A630040M18|AA410149|LCP1	TOX high mobility group box family member 4	protein-coding	0.100000	0.671642	
mm_151279.1	chr19	55253825	55254025	+	1	NA	NA	NA	556	NM_027976	433256	Mm.292056	NM_027976	ENSMUSG00000024981	Acsl5	1700030F05Rik|ACS2|ACS5|Facl5	acyl-CoA synthetase long-chain family member 5	protein-coding	0.010000	0.567164	
mm_48910.1	chr6	3993897	3994097	+	1	NA	NA	NA	-15	NM_010314	14699	Mm.95398	NM_010314	ENSMUSG00000029663	Gngt1	G(y)1|Gng1	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1	protein-coding	0.000000	0.427861	-20(GCTTTAAAATCC,+,0.00)
mm_126391.1	chr15	80191762	80191962	+	1	NA	NA	NA	18141	NM_010795	17309	Mm.299693	NM_010795	ENSMUSG00000042428	Mgat3	1110038J12Rik|AI848272|GnT-III	mannoside acetylglucosaminyltransferase 3	protein-coding	0.015000	0.487562	
mm_149925.1	chr19	26623851	26624051	+	1	NA	NA	NA	18791	NM_011416	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.005000	0.522388	
mm_18196.1	chr2	45117262	45117462	-	1	NA	NA	NA	-4083	NM_015753	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.060000	0.606965	
mm_109791.1	chr12	3253222	3253422	-	1	NA	NA	NA	17531	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.025000	0.432836	
mm_28793.1	chr3	96016768	96016968	-	1	NA	NA	NA	-21029	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.000000	0.373134	-45(GATTTTAAAAGA,-,0.00)
mm_157116.1	chrX	9439871	9440071	-	1	NA	NA	NA	29353	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.412935	
mm_153174.1	chr19	34493739	34493939	-	1	NA	NA	NA	-18704	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.020000	0.383085	88(CCTTTTAAGTGT,+,0.00)
mm_76814.1	chr8	104442874	104443074	-	1	NA	NA	NA	73	NM_001013380	234663	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	0.145000	0.736318	
mm_106123.1	chr11	116359896	116360096	-	1	NA	NA	NA	-24642	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.010000	0.477612	
mm_72865.1	chr8	88647264	88647464	+	1	NA	NA	NA	17	NM_145857	257632	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0.050000	0.646766	
mm_67273.1	chr7	75790980	75791180	-	1	NA	NA	NA	-57258	NM_001122780	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.015000	0.462687	-34(CCCTATATATAC,-,0.00)
mm_20633.1	chr2	132002581	132002781	-	1	NA	NA	NA	27307	NM_175445	215653	Mm.204737	NM_175445	ENSMUSG00000027339	Rassf2	3830431H01Rik|9030412M04Rik|AI852669|AW495050	Ras association (RalGDS/AF-6) domain family member 2	protein-coding	0.000000	0.318408	
mm_165974.1	chr4	102254967	102255167	+	1	NA	NA	NA	128	NM_019840	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.020000	0.527363	
mm_3448.1	chr1	150102784	150102984	+	1	NA	NA	NA	2853	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.000000	0.308458	
mm_28209.1	chr3	88336082	88336282	-	1	NA	NA	NA	-78	NM_178246	229512	Mm.439830	NM_173188	ENSMUSG00000001415	Smg5	BC024683|mKIAA1089	Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.065000	0.567164	
mm_80436.1	chr9	77924330	77924530	+	1	NA	NA	NA	7065	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.035000	0.572139	
mm_24022.1	chr3	87527203	87527403	+	1	NA	NA	NA	1725	NM_012051	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.025000	0.452736	
mm_89293.1	chr10	87907871	87908071	+	1	NA	NA	NA	46860	NM_001111276	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.005000	0.467662	
mm_21640.1	chr2	164333281	164333481	-	1	NA	NA	NA	616	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.045000	0.492537	
mm_40621.1	chr5	64803521	64803721	+	1	NA	NA	NA	98	NM_008453	16599	Mm.392759	NM_008453	ENSMUSG00000029178	Klf3	9930027G08Rik|AL024007|Bklf|Tef-2	Kruppel-like factor 3 (basic)	protein-coding	0.160000	0.766169	
mm_41156.1	chr5	87929770	87929970	+	1	NA	NA	NA	4237	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.010000	0.467662	
mm_82971.1	chr9	35790004	35790204	-	1	NA	NA	NA	8	NM_026593	68171	Mm.99495	NM_026593	ENSMUSG00000032108	D730048I06Rik	Pate-C|Pate6|mANLP2	RIKEN cDNA D730048I06 gene	protein-coding	0.010000	0.452736	
mm_117813.1	chr13	97760533	97760733	-	1	NA	NA	NA	200633	NR_046157	328314	Mm.138047	NR_046157	ENSMUSG00000110235	Gm5086	B230311A21|EG328314	predicted gene 5086	ncRNA	0.040000	0.437811	
mm_77176.1	chr8	111690760	111690960	-	1	NA	NA	NA	150	NM_025583	66473	Mm.34374	NM_025583	ENSMUSG00000031957	Ctrb1	2200008D09Rik|AI504462|Ctrb|Prt-2	chymotrypsinogen B1	protein-coding	0.005000	0.552239	
mm_132517.1	chr16	37580143	37580343	+	1	NA	NA	NA	90	NM_013547	15233	Mm.157442	NM_013547	ENSMUSG00000022821	Hgd	Hgo|aku	homogentisate 1, 2-dioxygenase	protein-coding	0.015000	0.467662	5(GAGTTTTAAAGA,-,0.00)
mm_96609.1	chr11	69096472	69096672	+	1	NA	NA	NA	-2384	NM_011065	18626	Mm.7373	NM_011065	ENSMUSG00000020893	Per1	Hftm|Per|m-rigui|mPer1	period circadian clock 1	protein-coding	0.005000	0.437811	
mm_50159.1	chr6	41547283	41547483	+	1	NA	NA	NA	25607	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.487562	84(GACTATAAGAGG,-,0.00)
mm_32740.1	chr4	116611928	116612128	+	1	NA	NA	NA	-14398	NR_029450	654318	Mm.255685	NR_029450	ENSMUSG00000085408	C530005A16Rik	D930044c15rik	RIKEN cDNA C530005A16 gene	ncRNA	0.010000	0.363184	
mm_65009.1	chr7	17060830	17061030	-	1	NA	NA	NA	1497	NM_001162950	53417	Mm.135110	NM_016868	ENSMUSG00000004328	Hif3a	Ipas|MOP7|NEPAS|bHLHe17	hypoxia inducible factor 3, alpha subunit	protein-coding	0.040000	0.636816	-98(GCCCCTTTATGG,-,0.00),-96(CCCTTTATGGTT,+,0.00)
mm_67929.1	chr7	99917317	99917517	-	1	NA	NA	NA	58199	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.080000	0.616915	
mm_97510.1	chr11	78499005	78499205	+	1	NA	NA	NA	-15	NM_011707	22370	Mm.3667	NM_011707	ENSMUSG00000017344	Vtn	AI256434|Vn	vitronectin	protein-coding	0.020000	0.557214	
mm_35422.1	chr4	35158155	35158355	-	1	NA	NA	NA	-771	NM_178061	214944	Mm.32968	NM_178061	ENSMUSG00000073910	Mob3b	8430436F23Rik|A430018A01Rik|Mobkl2b	MOB kinase activator 3B	protein-coding	0.035000	0.457711	
mm_31810.1	chr4	66827481	66827681	+	1	NA	NA	NA	30	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.030000	0.517413	
mm_117735.1	chr13	95659244	95659444	-	1	NA	NA	NA	-37576	NM_010170	14064	Mm.440952	NM_010170	ENSMUSG00000021675	F2rl2	F730031A08|PAR3	coagulation factor II (thrombin) receptor-like 2	protein-coding	0.030000	0.502488	
mm_66978.1	chr7	63937142	63937342	-	1	NA	NA	NA	1673	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.075000	0.676617	
mm_133998.1	chr16	4769582	4769782	-	1	NA	NA	NA	20253	NM_025670	66626	Mm.157648	NM_025670	ENSMUSG00000004071	Cdip1	2700048O17Rik|5730403B10Rik|AU018521|AW742692|CDIP	cell death inducing Trp53 target 1	protein-coding	0.000000	0.537313	
mm_99044.1	chr11	98964808	98965008	+	1	NA	NA	NA	4437	NM_001176528	19401	Mm.439744	NM_009024	ENSMUSG00000037992	Rara	Nr1b1|RAR|RARalpha1	retinoic acid receptor, alpha	protein-coding	0.025000	0.552239	
mm_158419.1	chrX	137950398	137950598	-	1	NA	NA	NA	259082	NM_026469	67944	Mm.443280	NM_026469	ENSMUSG00000071686	Tex13a	1700025D03Rik	testis expressed 13A	protein-coding	0.005000	0.348259	88(GGCCATTAATGA,-,0.00)
mm_171684.1	chr4	58206611	58206811	-	1	NA	NA	NA	-115	NM_022814	64817	Mm.261024	NM_022814	ENSMUSG00000028369	Svep1	1110021D17Rik|4833413O10Rik|AA387071|D430029O09Rik|Polydom	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1	protein-coding	0.010000	0.527363	70(CATTTTATAGGC,+,0.00)
mm_14163.1	chr2	126606565	126606765	+	1	NA	NA	NA	12013	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.020000	0.527363	
mm_104385.1	chr11	94474272	94474472	-	1	NA	NA	NA	-174	NM_001112813	12291	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0.110000	0.681592	
mm_138154.1	chr17	34214805	34215005	+	1	NA	NA	NA	10426	NM_011530	21355	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.025000	0.447761	
mm_51508.1	chr6	83136950	83137150	+	1	NA	NA	NA	-34	NM_133641	20166	Mm.4139	NM_009106	ENSMUSG00000034930	Rtkn	-	rhotekin	protein-coding	0.050000	0.611940	
mm_51504.1	chr6	83121618	83121818	+	1	NA	NA	NA	-257	NM_001083922	22377	Mm.1109	NM_016757	ENSMUSG00000030035	Wbp1	AI255152	WW domain binding protein 1	protein-coding	0.055000	0.497512	
mm_162917.1	chr10	120227783	120227983	+	1	NA	NA	NA	823	NM_025431	66225	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.025000	0.502488	
mm_74031.1	chr8	121792383	121792583	+	1	NA	NA	NA	37086	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.015000	0.557214	
mm_164750.1	chr17	75455560	75455760	+	1	NA	NA	NA	-9878	NM_207246	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding	0.015000	0.467662	
mm_12435.1	chr2	70661524	70661724	+	1	NA	NA	NA	115	NM_027352	70231	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|ENSMUSG00000075299|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.160000	0.751244	
mm_139254.1	chr17	47734340	47734540	+	1	NA	NA	NA	-2597	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.010000	0.522388	
mm_170082.1	chr17	34965976	34966176	+	1	NA	NA	NA	6080	NM_010479	193740	Mm.6388	NM_010479	ENSMUSG00000091971	Hspa1a	Hsp70-3|Hsp70.3|Hsp72|hsp68|hsp70A1	heat shock protein 1A	protein-coding	0.035000	0.522388	
mm_165978.1	chr4	102976039	102976239	+	1	NA	NA	NA	-10240	NM_001163767	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.010000	0.383085	
mm_76190.1	chr8	82402714	82402914	-	1	NA	NA	NA	-228	NM_008357	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.030000	0.587065	
mm_14885.1	chr2	148871625	148871825	+	1	NA	NA	NA	3787	NM_009976	13010	Mm.4263	NM_009976	ENSMUSG00000027447	Cst3	CysC	cystatin C	protein-coding	0.000000	0.467662	
mm_24677.1	chr3	94837519	94837719	+	1	NA	NA	NA	52	NM_172683	229584	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	0.070000	0.651741	61(GTCCCTTTAAGG,-,0.00),63(CCCTTTAAGGCG,+,0.00),64(CCTTTAAGGCGA,+,0.00)
mm_82641.1	chr9	22002520	22002720	-	1	NA	NA	NA	14	NM_001163787	77609	Mm.159953	NM_029939	ENSMUSG00000039632	Ccdc151	AI644415|C330001K17Rik|b2b1885Clo	coiled-coil domain containing 151	protein-coding	0.055000	0.572139	
mm_165542.1	chr2	181546321	181546521	+	1	NA	NA	NA	25936	NM_001271584	13002	Mm.140761	NM_016775	ENSMUSG00000000826	Dnajc5	2610314I24Rik|AU018536|Csp	DnaJ heat shock protein family (Hsp40) member C5	protein-coding	0.025000	0.442786	
mm_148660.1	chr19	5567932	5568132	+	1	NA	NA	NA	-42	NM_001033448	381201	Mm.441906	NM_001033448	ENSMUSG00000049562	Ap5b1	Gm962	adaptor-related protein complex 5, beta 1 subunit	protein-coding	0.180000	0.815920	
mm_123052.1	chr14	55635560	55635760	-	1	NA	NA	NA	18	NM_024267	75751	Mm.27546	NM_024267	ENSMUSG00000002319	Ipo4	8430408O15Rik|AA409693|Imp4a|RanBP4	importin 4	protein-coding	0.085000	0.641791	
mm_30101.1	chr3	138489292	138489492	-	1	NA	NA	NA	-10	NM_175224	75624	Mm.26833	NM_175224	ENSMUSG00000005813	Metap1	1700029C17Rik|AW047992|mKIAA0094	methionyl aminopeptidase 1	protein-coding	0.090000	0.731343	
mm_18248.1	chr2	52205591	52205791	-	1	NA	NA	NA	-85311	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.000000	0.442786	80(CTCCCTTTAAGG,-,0.00),82(CCCTTTAAGGAC,+,0.00),83(CCTTTAAGGACC,+,0.00)
mm_125691.1	chr15	66812269	66812469	+	1	NA	NA	NA	19460	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.000000	0.522388	-28(TCCTTTATAGGC,+,0.00),-28(TCCTTTATAGGC,-,0.00),62(CCTTTTCTAGCT,+,0.00)
mm_51048.1	chr6	65627051	65627251	+	1	NA	NA	NA	36753	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.000000	0.273632	
mm_123376.1	chr14	63245422	63245622	-	1	NA	NA	NA	-251	NM_001310610	14463	Mm.247669	NM_008092	ENSMUSG00000021944	Gata4	Gata-4	GATA binding protein 4	protein-coding	0.070000	0.611940	
mm_168275.1	chr1	102897545	102897745	-	1	NA	NA	NA	1741877	NR_037989	100504525	Mm.87065	NR_037989	ENSMUSG00000100684	Gm20268	-	predicted gene, 20268	ncRNA	0.030000	0.517413	
mm_108801.1	chr12	91668689	91668889	+	1	NA	NA	NA	-78302	NM_175335	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.040000	0.527363	
mm_117936.1	chr13	99434452	99434652	-	1	NA	NA	NA	-21726	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.512438	
mm_4455.1	chr1	172698987	172699187	+	1	NA	NA	NA	1031	NM_007768	12944	Mm.28767	NM_007768	ENSMUSG00000037942	Crp	AI255847	C-reactive protein, pentraxin-related	protein-coding	0.015000	0.487562	
mm_137393.1	chr17	25820286	25820486	+	1	NA	NA	NA	-3241	NM_173741	268933	Mm.95512	NM_173741	ENSMUSG00000025737	Wdr24	BC037651	WD repeat domain 24	protein-coding	0.000000	0.606965	
mm_99095.1	chr11	99914631	99914831	+	1	NA	NA	NA	-20	NM_001126323	670550	Mm.379775	NM_001126323	ENSMUSG00000078256	Gm11565	OTTMUSG00000002203	predicted gene 11565	protein-coding	0.000000	0.457711	-33(TCTTATAAAAGG,-,0.00)
mm_33001.1	chr4	120517550	120517750	+	1	NA	NA	NA	-14581	NM_177570	194219	Mm.29788	NM_177570	ENSMUSG00000047518	Slfnl1	4933406A14Rik	schlafen like 1	protein-coding	0.020000	0.502488	85(TTCTTTAAAAGA,-,0.00),86(TCTTTAAAAGAC,+,0.00)
mm_108299.1	chr12	79296344	79296544	+	1	NA	NA	NA	-162	NM_001008550	211978	Mm.297919	NM_001008550	ENSMUSG00000066440	Zfyve26	4930465A13|9330197E15Rik|A630028O16Rik|Gm893|mKIAA0321	zinc finger, FYVE domain containing 26	protein-coding	0.030000	0.482587	
mm_23736.1	chr3	69045027	69045227	+	1	NA	NA	NA	-385	NM_025863	66949	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.070000	0.601990	
mm_46487.1	chr5	105132050	105132250	-	1	NA	NA	NA	7402	NM_008620	17472	Mm.440525	NM_008620	ENSMUSG00000079363	Gbp4	AW228052|Mag-2|Mpa-2|Mpa2	guanylate binding protein 4	protein-coding	0.005000	0.328358	
mm_67660.1	chr7	86775482	86775682	-	1	NA	NA	NA	282	NM_016770	53320	Mm.269137	NM_016770	ENSMUSG00000001773	Folh1	GCP2|mopsm	folate hydrolase 1	protein-coding	0.025000	0.512438	
mm_24219.1	chr3	88647637	88647837	+	1	NA	NA	NA	5405	NM_181817	242093	Mm.269130	NM_181817	ENSMUSG00000049741	Rxfp4	GPCR142|Gpr100|Rln3r2|SALPR	relaxin family peptide receptor 4	protein-coding	0.025000	0.412935	
mm_60089.1	chr7	34659887	34660087	+	1	NA	NA	NA	-7146	NM_146188	233107	Mm.486198	NM_146188	ENSMUSG00000030499	Kctd15	BC031749	potassium channel tetramerisation domain containing 15	protein-coding	0.010000	0.522388	
mm_72125.1	chr8	71690410	71690610	+	1	NA	NA	NA	1258	NM_013564	16336	Mm.476857	NM_013564	ENSMUSG00000079019	Insl3	Rlf|Rlnl	insulin-like 3	protein-coding	0.005000	0.477612	
mm_116297.1	chr13	36577889	36578089	-	1	NA	NA	NA	156488	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.010000	0.512438	-23(GCCTTTAAACCA,+,0.00)
mm_136509.1	chr16	97170633	97170833	-	1	NA	NA	NA	2	NM_031174	13508	Mm.102437	NM_031174	ENSMUSG00000050272	Dscam	4932410A21Rik	Down syndrome cell adhesion molecule	protein-coding	0.110000	0.771144	-81(GCTTTAAGACTG,+,0.00)
mm_154042.1	chr19	53944096	53944296	-	1	NA	NA	NA	-110	NM_001168505	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.055000	0.641791	
mm_138951.1	chr17	44134703	44134903	+	1	NA	NA	NA	-28995	NM_199016	224794	Mm.255971	NM_199016	ENSMUSG00000023961	Enpp4	4933413N07Rik|AA986363|AI195364|E-NPP 4|Gm90|mKIAA0879	ectonucleotide pyrophosphatase/phosphodiesterase 4	protein-coding	0.035000	0.492537	
mm_152199.1	chr19	7583169	7583369	-	1	NA	NA	NA	23907	NM_019516	56072	Mm.298242	NM_019516	ENSMUSG00000024972	Lgals12	AW987437|Grip1	lectin, galactose binding, soluble 12	protein-coding	0.030000	0.527363	
mm_152882.1	chr19	24555710	24555910	-	1	NA	NA	NA	17	NM_008846	18719	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	0.135000	0.751244	
mm_16969.1	chr2	17730961	17731161	-	1	NA	NA	NA	7	NM_028757	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0.115000	0.721393	
mm_120159.1	chr14	60709405	60709605	+	1	NA	NA	NA	-23399	NM_001310594	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.040000	0.601990	
mm_19939.1	chr2	116065949	116066149	-	1	NA	NA	NA	-991	NM_010825	17536	Mm.247566	NM_010825	ENSMUSG00000027210	Meis2	A430109D20Rik|Mrg1|Stra10	Meis homeobox 2	protein-coding	0.025000	0.606965	
mm_92759.1	chr10	81060069	81060269	-	1	NA	NA	NA	-15	NM_024499	52551	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	0.100000	0.641791	
mm_167115.1	chr7	118210527	118210727	-	1	NA	NA	NA	33010	NM_001031814	233789	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	0.005000	0.467662	
mm_149527.1	chr19	12460717	12460917	+	1	NA	NA	NA	38	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.005000	0.407960	
mm_89582.1	chr10	95745979	95746179	+	1	NA	NA	NA	-181912	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.025000	0.432836	
mm_12222.1	chr2	67654067	67654267	+	1	NA	NA	NA	-21290	NR_106083	102465706		NR_106083	ENSMUSG00000098299	Mir7224	Gm27971|mmu-mir-7224	microRNA 7224	ncRNA	0.005000	0.368159	
mm_36405.1	chr4	77904925	77905125	-	1	NA	NA	NA	306870	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.005000	0.323383	
mm_60450.1	chr7	44477295	44477495	+	1	NA	NA	NA	7048	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.442786	
mm_52032.1	chr6	96113058	96113258	+	1	NA	NA	NA	4	NM_182808	320265	Mm.489890	NM_182808	ENSMUSG00000059187	Fam19a1	C630007B19Rik|FAM19A1 TAFA-1|TAFA1|Tafa-1	family with sequence similarity 19, member A1	protein-coding	0.020000	0.467662	
mm_73866.1	chr8	118549605	118549805	+	1	NA	NA	NA	266094	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.025000	0.422886	
mm_37981.1	chr4	133601798	133601998	-	1	NA	NA	NA	270	NM_018754	55948	Mm.44482	NM_018754	ENSMUSG00000047281	Sfn	Er|Mme1|Ywhas	stratifin	protein-coding	0.040000	0.621891	
mm_135147.1	chr16	35857400	35857600	-	1	NA	NA	NA	13882	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.000000	0.378109	-53(GACTATTTAAGG,-,0.00),-51(CTATTTAAGGAC,+,0.00)
mm_73152.1	chr8	94994313	94994513	+	1	NA	NA	NA	10014	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.010000	0.542289	
mm_44402.1	chr5	17835972	17836172	-	1	NA	NA	NA	-176	NM_007643	12491	Mm.18628	NM_007643	ENSMUSG00000002944	Cd36	FAT|GPIV|Scarb3	CD36 antigen	protein-coding	0.010000	0.432836	
mm_69150.1	chr7	127121942	127122142	-	1	NA	NA	NA	-13	NM_133686	67375	Mm.26928	NM_133686	ENSMUSG00000030674	Qprt	2410027J01Rik|AI647766|QPRTase	quinolinate phosphoribosyltransferase	protein-coding	0.020000	0.592040	
mm_94114.1	chr10	128626435	128626635	-	1	NA	NA	NA	-29	NM_013765	27370	Mm.32118	NM_013765	ENSMUSG00000025362	Rps26	-	ribosomal protein S26	protein-coding	0.080000	0.512438	0(TACTATATAAGC,-,0.00)
mm_86491.1	chr10	5593687	5593887	+	1	NA	NA	NA	59	NM_026793	68632	Mm.338242	NM_026793	ENSMUSG00000046916	Myct1	1110020B04Rik|AI225941|AI642973|Mtmc1	myc target 1	protein-coding	0.020000	0.402985	-95(GAGTATAAAAGC,-,0.00),-61(CCTTTTATGTAA,+,0.00)
mm_140033.1	chr17	74338779	74338979	+	1	NA	NA	NA	-108	NM_001162870	50850	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	0.135000	0.800995	
mm_113381.1	chr13	33016108	33016308	+	1	NA	NA	NA	-11206	NM_011452	20706	Mm.45371	NM_011452	ENSMUSG00000021403	Serpinb9b	1600019A21Rik|R86|SPI-CI|Spi10|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9b	protein-coding	0.000000	0.457711	
mm_68375.1	chr7	108930076	108930276	-	1	NA	NA	NA	-18	NM_175532	244202	Mm.37991	NM_175532	ENSMUSG00000049709	Nlrp10	6430548I20Rik|Nalp10|Napl10|PAN5|Pynod	NLR family, pyrin domain containing 10	protein-coding	0.020000	0.452736	
mm_11761.1	chr2	38517271	38517471	+	1	NA	NA	NA	5495	NM_001159631	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.010000	0.482587	
mm_164314.1	chr15	103898344	103898544	-	1	NA	NA	NA	856	NM_009268	20771	Mm.30276	NM_009268		Mucl1	Spt-2|Spt2	mucin-like 1	protein-coding	0.015000	0.393035	
mm_137481.1	chr17	26932952	26933152	+	1	NA	NA	NA	-75	NM_001302397	21652	Mm.258953	NM_009343	ENSMUSG00000024193	Phf1	AW557215|D17Ertd455e|Pcl1|Phf2|Tctex3	PHD finger protein 1	protein-coding	0.095000	0.706468	
mm_10909.1	chr2	25366497	25366697	+	1	NA	NA	NA	-971	NM_001033293	227620	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	0.015000	0.517413	
mm_85294.1	chr9	100466789	100466989	-	1	NA	NA	NA	19584	NM_001033543	213208	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.005000	0.562189	
mm_9269.1	chr1	171633072	171633272	-	1	NA	NA	NA	8728	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.407960	
mm_130022.1	chr15	88819349	88819549	-	1	NA	NA	NA	-131	NM_145477	223774	Mm.41512	NM_145477	ENSMUSG00000035845	Alg12	ECM39	asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)	protein-coding	0.080000	0.631841	
mm_130925.1	chr15	102977371	102977571	-	1	NA	NA	NA	439	NM_008272	15427	Mm.4765	NM_008272	ENSMUSG00000036139	Hoxc9	Hox-3.2	homeobox C9	protein-coding	0.025000	0.597015	
mm_24903.1	chr3	96195301	96195501	+	1	NA	NA	NA	2185	NM_026975	69168	Mm.104531	NM_026975	ENSMUSG00000015943	Bola1	1810037G04Rik	bolA-like 1 (E. coli)	protein-coding	0.015000	0.477612	
mm_91071.1	chr10	19008605	19008805	-	1	NA	NA	NA	3258	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.020000	0.487562	
mm_36786.1	chr4	103026558	103026758	-	1	NA	NA	NA	70	NM_011831	23919	Mm.100163	NM_011831	ENSMUSG00000066090	Insl5	RIF2	insulin-like 5	protein-coding	0.015000	0.507463	
mm_96977.1	chr11	70652836	70653036	+	1	NA	NA	NA	1714	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.025000	0.472637	
mm_34765.1	chr4	152488219	152488419	+	1	NA	NA	NA	10177	NM_153424	260305	Mm.302496	NM_153424	ENSMUSG00000039577	Nphp4	4930564O18Rik|nmf192	nephronophthisis 4 (juvenile) homolog (human)	protein-coding	0.030000	0.502488	
mm_28527.1	chr3	92621113	92621313	-	1	NA	NA	NA	447	NM_001166172	78382	Mm.235474	NM_001166172	ENSMUSG00000086848	Lce6a	2210420J11Rik	late cornified envelope 6A	protein-coding	0.015000	0.432836	
mm_86716.1	chr10	19009507	19009707	+	1	NA	NA	NA	2356	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.025000	0.487562	
mm_142748.1	chr17	48445808	48446008	-	1	NA	NA	NA	5593	NM_027292	70026	Mm.22613	NM_027292	ENSMUSG00000023995	Tspo2	2510027D20Rik|Bzrpl1	translocator protein 2	protein-coding	0.005000	0.527363	
mm_107483.1	chr12	38123774	38123974	+	1	NA	NA	NA	243169	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	0.000000	0.243781	36(TCTTTAATAGTA,+,0.00)
mm_1891.1	chr1	85684996	85685196	+	1	NA	NA	NA	35108	NM_001313714	20684	Mm.290906	NM_013673	ENSMUSG00000026222	Sp100	A430075G10Rik	nuclear antigen Sp100	protein-coding	0.000000	0.462687	-45(ACCTTTATAGTC,+,0.00)
mm_153003.1	chr19	30115257	30115457	-	1	NA	NA	NA	60084	NM_138595	104174	Mm.274852	NM_138595	ENSMUSG00000024827	Gldc	D030049L12Rik|D19Wsu57e	glycine decarboxylase	protein-coding	0.025000	0.547264	
mm_104908.1	chr11	99658881	99659081	-	1	NA	NA	NA	-22	NM_001126320	100040248	Mm.340791	NM_001126320	ENSMUSG00000069718	Gm11563	2310045F10Rik|OTTMUSG00000002200	predicted gene 11563	protein-coding	0.005000	0.412935	-34(GAGTATAAAAGG,-,0.00)
mm_96422.1	chr11	67256147	67256347	+	1	NA	NA	NA	18435	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.015000	0.447761	
mm_135917.1	chr16	67618689	67618889	-	1	NA	NA	NA	2119	NM_001347247	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.015000	0.363184	-7(TTTTTTAAAGCT,+,0.00)
mm_17277.1	chr2	26091954	26092154	-	1	NA	NA	NA	342	NM_001037098	67991	Mm.131074	NM_026495	ENSMUSG00000026932	Nacc2	0610020I02Rik|AI448087|Btbd14a|C030048H19Rik	nucleus accumbens associated 2, BEN and BTB (POZ) domain containing	protein-coding	0.055000	0.562189	-32(GTTTTTAAAGCT,+,0.00)
mm_105364.1	chr11	103193432	103193632	-	1	NA	NA	NA	15016	NM_001254724	69441	Mm.380648	NM_027082	ENSMUSG00000020940	1700023F06Rik	-	RIKEN cDNA 1700023F06 gene	protein-coding	0.050000	0.691542	
mm_137456.1	chr17	26561392	26561592	+	1	NA	NA	NA	-20	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.140000	0.776119	-93(CCCCTTTAATGG,-,0.00),-91(CCTTTAATGGGG,+,0.00)
mm_92298.1	chr10	73326892	73327092	-	1	NA	NA	NA	-240287	NR_040646	327768	Mm.417745	NR_040646		A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0.020000	0.442786	
mm_15560.1	chr2	158502614	158502814	+	1	NA	NA	NA	102	NM_145635	246747	Mm.28800	NM_145635	ENSMUSG00000044405	Adig	SMAF-1|Smaf1	adipogenin	protein-coding	0.025000	0.562189	
mm_88019.1	chr10	67185848	67186048	+	1	NA	NA	NA	198	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.045000	0.507463	
mm_138316.1	chr17	34681310	34681510	+	1	NA	NA	NA	10875	NM_031176	81877	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	0.030000	0.611940	
mm_49240.1	chr6	17306323	17306523	+	1	NA	NA	NA	88	NM_007616	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.035000	0.577114	
mm_156170.1	chrX	130186622	130186822	+	1	NA	NA	NA	436980	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.000000	0.338308	
mm_78180.1	chr9	21196647	21196847	+	1	NA	NA	NA	42	NM_019798	18577	Mm.191749	NM_019798	ENSMUSG00000032177	Pde4a	D9Ertd60e|Dpde2	phosphodiesterase 4A, cAMP specific	protein-coding	0.040000	0.631841	
mm_172198.1	chr6	51466603	51466803	-	1	NA	NA	NA	3191	NM_182650	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.005000	0.378109	
mm_172960.1	chr9	88482131	88482331	-	1	NA	NA	NA	166	NM_019666	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.115000	0.706468	
mm_109575.1	chr12	112146105	112146305	+	1	NA	NA	NA	-3	NM_001097621	668303	Mm.313104	NM_001097621	ENSMUSG00000021294	Kif26a	mKIAA1236	kinesin family member 26A	protein-coding	0.075000	0.731343	
mm_74446.1	chr8	4105663	4105863	-	1	NA	NA	NA	1	NM_026956	69142	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	0.005000	0.537313	
mm_115802.1	chr13	19357271	19357471	-	1	NA	NA	NA	38442	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.020000	0.472637	
mm_139202.1	chr17	47672574	47672774	+	1	NA	NA	NA	-14936	NR_045945	100415787	Mm.392206	NR_045945	ENSMUSG00000084880	Tomm6os	Gm14872|OTTMUSG00000018355|Prickle4os	translocase of outer mitochondrial membrane 6, opposite strand	ncRNA	0.140000	0.766169	
mm_3167.1	chr1	135631661	135631861	+	1	NA	NA	NA	-46406	NM_173437	215690	Mm.34977	NM_173437	ENSMUSG00000009418	Nav1	9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1	neuron navigator 1	protein-coding	0.020000	0.562189	
mm_105210.1	chr11	102162548	102162748	-	1	NA	NA	NA	-6241	NM_029649	76547	Mm.46529	NM_029649	ENSMUSG00000020921	Tmem101	2610511E22Rik	transmembrane protein 101	protein-coding	0.000000	0.303483	
mm_24167.1	chr3	88553680	88553880	+	1	NA	NA	NA	64	NM_033526	94232	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	0.105000	0.766169	
mm_26188.1	chr3	138415397	138415597	+	1	NA	NA	NA	0	NM_011996	26876	Mm.158750	NM_011996	ENSMUSG00000037797	Adh4	Adh2	alcohol dehydrogenase 4 (class II), pi polypeptide	protein-coding	0.010000	0.492537	
mm_84799.1	chr9	77230370	77230570	-	1	NA	NA	NA	117400	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.015000	0.527363	
mm_118233.1	chr13	111489874	111490074	-	1	NA	NA	NA	67	NM_028487	73274	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.070000	0.651741	
mm_36524.1	chr4	84675304	84675504	-	1	NA	NA	NA	-318	NM_172870	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.100000	0.681592	-34(CCCTAGAAAAGC,-,0.00)
mm_121522.1	chr14	122106968	122107168	+	1	NA	NA	NA	-14	NM_080556	68059	Mm.275191	NM_080556	ENSMUSG00000025544	Tm9sf2	1500001N15Rik|AA536814|D14Ertd64e|P76	transmembrane 9 superfamily member 2	protein-coding	0.150000	0.721393	
mm_134013.1	chr16	4878948	4879148	-	1	NA	NA	NA	803	NM_145359	207740	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.035000	0.512438	
mm_169055.1	chr13	22707324	22707524	+	1	NA	NA	NA	19198	NM_001166709	432735	Mm.480282	NM_001166709		Vmn1r207-ps	Gm11312|OTTMUSG00000000511|Vmn1r207	vomeronasal 1 receptor 207, pseudogene	protein-coding	0.000000	0.432836	
mm_168854.1	chr12	24252372	24252572	-	1	NA	NA	NA	-155203	NM_001256489	66808	Mm.379124	NM_001256489	ENSMUSG00000073158	9030624G23Rik	-	RIKEN cDNA 9030624G23 gene	protein-coding	0.120000	0.776119	
mm_10266.1	chr2	9869520	9869720	+	1	NA	NA	NA	8980	NM_008091	14462	Mm.313866	NM_008091	ENSMUSG00000015619	Gata3	Gata-3|jal	GATA binding protein 3	protein-coding	0.015000	0.388060	-35(AACTATAAATGC,-,0.00)
mm_68448.1	chr7	110059606	110059806	-	1	NA	NA	NA	-1996	NM_009281	20841	Mm.10815	NM_009281	ENSMUSG00000061079	Zfp143	AA959806|AU015869|D7Ertd805e|KRAB14|SBF|Staf|Zfp79|Zfp80-rs1|Znf143|pHZ-1	zinc finger protein 143	protein-coding	0.045000	0.517413	
mm_96927.1	chr11	70510743	70510943	+	1	NA	NA	NA	3773	NM_001013607	327956	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	0.005000	0.492537	
mm_107102.1	chr12	17732132	17732332	+	1	NA	NA	NA	41418	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.015000	0.537313	
mm_92205.1	chr10	68137106	68137306	-	1	NA	NA	NA	141520	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.005000	0.437811	
mm_79574.1	chr9	58134627	58134827	+	1	NA	NA	NA	62	NM_001162479	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.020000	0.587065	
mm_24373.1	chr3	90220762	90220962	+	1	NA	NA	NA	78	NM_026677	68328	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	0.065000	0.661692	
mm_37374.1	chr4	120968811	120969011	-	1	NA	NA	NA	4411	NR_105982	102465614		NR_105982	ENSMUSG00000106436	Mir7015	mmu-mir-7015	microRNA 7015	ncRNA	0.010000	0.502488	
mm_99286.1	chr11	101321975	101322175	+	1	NA	NA	NA	-2988	NM_178932	237940	Mm.302277	NM_178932	ENSMUSG00000078651	Aoc2	RAO	amine oxidase, copper containing 2 (retina-specific)	protein-coding	0.010000	0.432836	
mm_144582.1	chr18	31931357	31931557	+	1	NA	NA	NA	-50	NM_144862	225341	Mm.24551	NM_144862	ENSMUSG00000024395	Lims2	PINCH2	LIM and senescent cell antigen like domains 2	protein-coding	0.070000	0.651741	
mm_10882.1	chr2	25243144	25243344	+	1	NA	NA	NA	315	NM_176834	68846	Mm.24777	NM_176834	ENSMUSG00000044628	Rnf208	1110061N23Rik	ring finger protein 208	protein-coding	0.030000	0.666667	
mm_96532.1	chr11	68586908	68587108	+	1	NA	NA	NA	-29	NM_177779	276920	Mm.123046	NM_177779	ENSMUSG00000045915	Ccdc42	A530001H01Rik	coiled-coil domain containing 42	protein-coding	0.010000	0.522388	
mm_72261.1	chr8	75097036	75097236	+	1	NA	NA	NA	3518	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.035000	0.597015	
mm_30914.1	chr4	32615382	32615582	+	1	NA	NA	NA	12	NM_011997	26885	Mm.22279	NM_011997	ENSMUSG00000028282	Casp8ap2	D4Ertd659e|FLASH	caspase 8 associated protein 2	protein-coding	0.115000	0.726368	
mm_53777.1	chr6	146219746	146219946	+	1	NA	NA	NA	282377	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.020000	0.512438	
mm_89999.1	chr10	112269951	112270151	+	1	NA	NA	NA	-1072	NM_001025581	268345	Mm.336242	NM_001025581	ENSMUSG00000035681	Kcnc2	AW047325|B230117I07|KShIIIA|Kv3.2	potassium voltage gated channel, Shaw-related subfamily, member 2	protein-coding	0.030000	0.592040	
mm_98806.1	chr11	97050734	97050934	+	1	NA	NA	NA	14	NM_001081434	71240	Mm.190450	NM_001081434	ENSMUSG00000038534	Osbpl7	4933437E18Rik	oxysterol binding protein-like 7	protein-coding	0.055000	0.636816	
mm_31122.1	chr4	42957362	42957562	+	1	NA	NA	NA	4368	NM_019874	56323	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.025000	0.552239	
mm_156789.1	chrX	162637990	162638190	+	1	NA	NA	NA	5568	NM_001290633	194590	Mm.442441	NM_178256	ENSMUSG00000040855	Reps2	POB1	RALBP1 associated Eps domain containing protein 2	protein-coding	0.005000	0.402985	
mm_116783.1	chr13	53285991	53286191	-	1	NA	NA	NA	18	NM_013846	26564	Mm.342774	NM_013846	ENSMUSG00000021464	Ror2	Ntrkr2|mRor2	receptor tyrosine kinase-like orphan receptor 2	protein-coding	0.110000	0.746269	
mm_87734.1	chr10	60133533	60133733	+	1	NA	NA	NA	6857	NR_105871	102465546		NR_105871	ENSMUSG00000105468	Mir6906	mmu-mir-6906	microRNA 6906	ncRNA	0.010000	0.582090	
mm_647.1	chr1	40425484	40425684	+	1	NA	NA	NA	-3986	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.020000	0.353234	33(GTCTATATAGGA,-,0.00)
mm_139367.1	chr17	51435440	51435640	+	1	NA	NA	NA	12729	NR_046166	328837	Mm.236143	NR_046166		C330011F03Rik	C330011F03	RIKEN cDNA C330011F03 gene	ncRNA	0.000000	0.497512	
mm_5632.1	chr1	40427245	40427445	-	1	NA	NA	NA	-2225	NM_001294171	17082	Mm.289824	NM_010743	ENSMUSG00000026069	Il1rl1	DER4|Fit-1|Ly84|ST2L|St2|St2-rs1|T1|T1/ST2	interleukin 1 receptor-like 1	protein-coding	0.040000	0.407960	-24(TCTTTAAAACAG,+,0.00)
mm_149619.1	chr19	16919546	16919746	+	1	NA	NA	NA	-36472	NM_181348	353211	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.040000	0.502488	-1(GTCTTTTAGAGC,-,0.00),0(TCTTTTAGAGCA,+,0.00)
mm_55030.1	chr6	48948785	48948985	-	1	NA	NA	NA	18989	NM_001081273	69761	Mm.333053	NM_001081273	ENSMUSG00000029813	1600015I10Rik	AI429442|Doxl1	RIKEN cDNA 1600015I10 gene	protein-coding	0.005000	0.358209	
mm_6297.1	chr1	71068871	71069071	-	1	NA	NA	NA	34001	NM_007525	12021	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	ENSMUSG00000060893|ENSMUSG00000073653	BRCA1 associated RING domain 1	protein-coding	0.005000	0.353234	
mm_117612.1	chr13	91387985	91388185	-	1	NA	NA	NA	0	NR_045161	320297	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0.030000	0.482587	
mm_68775.1	chr7	122046824	122047024	-	1	NA	NA	NA	20162	NM_026140	67417	Mm.45171	NM_026140	ENSMUSG00000030871	Ears2	3230401I01Rik|mKIAA1970	glutamyl-tRNA synthetase 2, mitochondrial	protein-coding	0.010000	0.467662	
mm_19306.1	chr2	90505811	90506011	-	1	NA	NA	NA	-26737	NM_001135657	19271	Mm.330393	NM_008982	ENSMUSG00000025314	Ptprj	AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1	protein tyrosine phosphatase, receptor type, J	protein-coding	0.015000	0.472637	-74(CCGTAGAAAAGC,-,0.00)
mm_39326.1	chr5	8606466	8606666	+	1	NA	NA	NA	16386	NM_001347311	242819	Mm.332192	NM_198620	ENSMUSG00000040570	Rundc3b	Gm440	RUN domain containing 3B	protein-coding	0.020000	0.323383	
mm_73851.1	chr8	117701959	117702159	+	1	NA	NA	NA	113	NM_008290	15486	Mm.276466	NM_008290	ENSMUSG00000031844	Hsd17b2	AI194836|AI194967|AI255511	hydroxysteroid (17-beta) dehydrogenase 2	protein-coding	0.040000	0.646766	
mm_130848.1	chr15	101938580	101938780	-	1	NA	NA	NA	1644	NM_146063	223917	Mm.162744	NM_146063	ENSMUSG00000061397	Krt79	BC031593	keratin 79	protein-coding	0.010000	0.398010	
mm_25083.1	chr3	100439267	100439467	+	1	NA	NA	NA	12962	NR_040543	73806	Mm.396549	NR_040543	ENSMUSG00000086923	4930406D18Rik	-	RIKEN cDNA 4930406D18 gene	ncRNA	0.005000	0.527363	
mm_110356.1	chr12	40037275	40037475	-	1	NA	NA	NA	1	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.085000	0.676617	
mm_88529.1	chr10	78352429	78352629	+	1	NA	NA	NA	-829	NM_053014	28169	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.125000	0.751244	
mm_145352.1	chr18	56505724	56505924	+	1	NA	NA	NA	-32315	NR_106160	102465790		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	0.015000	0.472637	86(GTATATATAGGC,+,0.00)
mm_114121.1	chr13	55190329	55190529	+	1	NA	NA	NA	-19353	NM_008739	18193	Mm.12964	NM_008739	ENSMUSG00000021488	Nsd1	AI528500|KMT3B	nuclear receptor-binding SET-domain protein 1	protein-coding	0.080000	0.666667	
mm_75274.1	chr8	40887002	40887202	-	1	NA	NA	NA	24735	NM_001044740	11988	Mm.4676	NM_007514	ENSMUSG00000031596	Slc7a2	20.5|AI158848|Atrc2|CAT-2|Cat2|Tea	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	protein-coding	0.020000	0.417910	-32(CATTTTAAAAGC,-,0.00),32(GCTCCTAAAAGC,-,0.00)
mm_27030.1	chr3	26153798	26153998	-	1	NA	NA	NA	-591	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.020000	0.373134	
mm_91863.1	chr10	59441739	59441939	-	1	NA	NA	NA	-60	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.040000	0.517413	
mm_143058.1	chr17	57005359	57005559	-	1	NA	NA	NA	-5354	NM_008954	19197	Mm.86487	NM_008954	ENSMUSG00000002664	Pspn	PSP	persephin	protein-coding	0.035000	0.562189	
mm_113797.1	chr13	46418389	46418589	+	1	NA	NA	NA	189	NM_001081425	666794	Mm.38269	NM_001081425	ENSMUSG00000038132	Rbm24	6330546B05Rik|AI606861	RNA binding motif protein 24	protein-coding	0.095000	0.721393	
mm_157868.1	chrX	75379709	75379909	-	1	NA	NA	NA	232	NM_007977	14069	Mm.1805	NM_007977	ENSMUSG00000031196	F8	Cf-8|Cf8|FVIII	coagulation factor VIII	protein-coding	0.000000	0.373134	
mm_53696.1	chr6	142756633	142756833	+	1	NA	NA	NA	47	NM_009908	12764	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.130000	0.751244	
mm_4985.1	chr1	191717980	191718180	+	1	NA	NA	NA	56	NM_172266	226856	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0.155000	0.800995	
mm_167649.1	chr9	65541825	65542025	+	1	NA	NA	NA	38162	NM_153119	102595	Mm.247303	NM_153119	ENSMUSG00000050721	Plekho2	AI840980|Plekhq1	pleckstrin homology domain containing, family O member 2	protein-coding	0.015000	0.542289	
mm_44473.1	chr5	23432665	23432865	-	1	NA	NA	NA	1588	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.015000	0.532338	
mm_115994.1	chr13	24391556	24391756	-	1	NA	NA	NA	-23466	NM_007717	12763	Mm.8396	NM_007717	ENSMUSG00000016756	Cmah	-	cytidine monophospho-N-acetylneuraminic acid hydroxylase	protein-coding	0.005000	0.358209	13(TTCTCTATATGG,-,0.00)
mm_96264.1	chr11	62648686	62648886	+	1	NA	NA	NA	122	NM_175002	216829	Mm.295306	NM_175002	ENSMUSG00000048497	Mmgt2	AI852046	membrane magnesium transporter 2	protein-coding	0.090000	0.716418	
mm_13560.1	chr2	112265647	112265847	+	1	NA	NA	NA	-567	NM_133649	107723	Mm.491155	NM_133648	ENSMUSG00000027130	Slc12a6	9530023I19Rik|KCC3|gaxp	solute carrier family 12, member 6	protein-coding	0.155000	0.746269	
mm_167461.1	chr8	123443248	123443448	+	1	NA	NA	NA	89	NM_001281803	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.050000	0.592040	
mm_111530.1	chr12	100520716	100520916	-	1	NA	NA	NA	6	NM_001033213	104718	Mm.295441	NM_001033213	ENSMUSG00000033530	Ttc7b	AA408451|Ttc7l1	tetratricopeptide repeat domain 7B	protein-coding	0.200000	0.890547	
mm_4703.1	chr1	180851022	180851222	+	1	NA	NA	NA	-29	NM_145943	208768	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.115000	0.676617	
mm_73042.1	chr8	94267028	94267228	+	1	NA	NA	NA	52527	NM_172410	71805	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0.025000	0.542289	
mm_61524.1	chr7	78914155	78914355	+	1	NA	NA	NA	20	NM_001113527	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.005000	0.631841	
mm_103600.1	chr11	78400724	78400924	-	1	NA	NA	NA	6339	NR_003282	790911	Mm.457257	NR_003282	ENSMUSG00000085747	Slc13a2os	Gm11194|OTTMUSG00000000132	solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2, opposite strand	ncRNA	0.020000	0.562189	
mm_53495.1	chr6	135242073	135242273	+	1	NA	NA	NA	5711	NM_001080552	14840	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	0.020000	0.532338	
mm_50352.1	chr6	48593790	48593990	+	1	NA	NA	NA	7	NM_001079904	58887	Mm.219183	NM_175099	ENSMUSG00000052751	Repin1	AI425994|Ap4|E430037F08Rik|Zfp-464|Zfp464	replication initiator 1	protein-coding	0.105000	0.741294	
mm_124019.1	chr14	76520715	76520915	-	1	NA	NA	NA	40	NR_045660	75789	Mm.159571	NR_045660	ENSMUSG00000097172	4930444M15Rik	-	RIKEN cDNA 4930444M15 gene	ncRNA	0.015000	0.477612	
mm_139245.1	chr17	47734090	47734290	+	1	NA	NA	NA	-2847	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.015000	0.522388	
mm_54589.1	chr6	38147331	38147531	-	1	NA	NA	NA	-22845	NM_080467	140494	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	0.020000	0.532338	
mm_26776.1	chr3	9003744	9003944	-	1	NA	NA	NA	671	NM_009412	21985	Mm.371590	NM_009412	ENSMUSG00000027506	Tpd52	AI043038|mD52	tumor protein D52	protein-coding	0.015000	0.472637	
mm_85493.1	chr9	106135959	106136159	-	1	NA	NA	NA	-18065	NR_029549	387153		NR_029549	ENSMUSG00000065407	Mir135a-1	Mir135a01|Mirn135|Mirn135a-1|mir-135a-1	microRNA 135a-1	ncRNA	0.015000	0.462687	
mm_52642.1	chr6	117178619	117178819	+	1	NA	NA	NA	10184	NM_021704	20315	Mm.303231	NM_013655	ENSMUSG00000061353	Cxcl12	Pbsf|Scyb12|Sdf1|Tlsf|Tpar1	chemokine (C-X-C motif) ligand 12	protein-coding	0.010000	0.437811	
mm_59771.1	chr7	28834001	28834201	+	1	NA	NA	NA	-69	NM_010707	16857	Mm.210336	NM_010707		Lgals6	galectin-6	lectin, galactose binding, soluble 6	protein-coding	0.000000	0.577114	
mm_126560.1	chr15	82166937	82167137	+	1	NA	NA	NA	19768	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.020000	0.527363	
mm_54822.1	chr6	42353222	42353422	-	1	NA	NA	NA	3494	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.025000	0.507463	
mm_17248.1	chr2	25627843	25628043	-	1	NA	NA	NA	31	NM_007995	14133	Mm.10510	NM_007995	ENSMUSG00000026938	Fcna	Fcn1	ficolin A	protein-coding	0.020000	0.562189	
mm_63918.1	chr7	139248405	139248605	+	1	NA	NA	NA	23	NM_001098636	101631	Mm.334300	NM_001033206	ENSMUSG00000060260	Pwwp2b	AI594893|D7Ertd517e|D930023J19Rik|Pwwp2	PWWP domain containing 2B	protein-coding	0.165000	0.786070	
mm_860.1	chr1	52137294	52137494	+	1	NA	NA	NA	17772	NM_001205313	20846	Mm.277406	NM_009283	ENSMUSG00000026104	Stat1	2010005J02Rik|AA408197	signal transducer and activator of transcription 1	protein-coding	0.045000	0.562189	
mm_57505.1	chr6	125460536	125460736	-	1	NA	NA	NA	34119	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.035000	0.457711	
mm_117626.1	chr13	91896473	91896673	-	1	NA	NA	NA	-19688	NM_198415	76722	Mm.316438	NM_198415	ENSMUSG00000021622	Ckmt2	2300008A19Rik|ScCKmit	creatine kinase, mitochondrial 2	protein-coding	0.005000	0.472637	
mm_113230.1	chr13	27242330	27242530	+	1	NA	NA	NA	0	NM_008865	18776	Mm.37203	NM_008865	ENSMUSG00000038891	Prl3b1	Csh2|Ghd8|PL|Pl-2|Pl2|mPL-II|mplII	prolactin family 3, subfamily b, member 1	protein-coding	0.010000	0.482587	
mm_52687.1	chr6	118066283	118066483	+	1	NA	NA	NA	-2	NM_027526	70727	Mm.87660	NM_027526	ENSMUSG00000030134	Rasgef1a	6330404M18Rik|AI835194	RasGEF domain family, member 1A	protein-coding	0.075000	0.706468	
mm_20591.1	chr2	131164048	131164248	-	1	NA	NA	NA	-4067	NM_001311138	67326	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	0.015000	0.472637	
mm_70167.1	chr7	143608355	143608555	-	1	NA	NA	NA	-8365	NM_013742	27267	Mm.125659	NM_013742	ENSMUSG00000010755	Cars	CA3	cysteinyl-tRNA synthetase	protein-coding	0.020000	0.427861	
mm_14916.1	chr2	150786712	150786912	+	1	NA	NA	NA	16	NM_153781	110078	Mm.222584	NM_153781	ENSMUSG00000033059	Pygb	-	brain glycogen phosphorylase	protein-coding	0.080000	0.651741	
mm_166507.1	chr6	5511041	5511241	+	1	NA	NA	NA	-14863	NM_013743	27273	Mm.235547	NM_013743	ENSMUSG00000019577	Pdk4	AV005916	pyruvate dehydrogenase kinase, isoenzyme 4	protein-coding	0.020000	0.457711	73(ACCTAGAAAAGG,-,0.00)
mm_62718.1	chr7	110772688	110772888	+	1	NA	NA	NA	184	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.010000	0.507463	
mm_140398.1	chr17	87636590	87636790	+	1	NA	NA	NA	711	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.180000	0.815920	
mm_161161.1	chr13	27198952	27199152	+	1	NA	NA	NA	149	NM_001163218	27372	Mm.291456	NM_013766	ENSMUSG00000017922	Prl3c1	Ghd7|PLP-J|Prlpi|Prlpj|decidualin	prolactin family 3, subfamily c, member 1	protein-coding	0.005000	0.452736	88(ACTTTTAAGGTG,+,0.00)
mm_66401.1	chr7	44359749	44359949	-	1	NA	NA	NA	15181	NM_027049	69349	Mm.358922	NM_027049	ENSMUSG00000008028	1700008O03Rik	-	RIKEN cDNA 1700008O03 gene	protein-coding	0.015000	0.412935	
mm_142944.1	chr17	56074504	56074704	-	1	NA	NA	NA	385	NM_024432	66530	Mm.28000	NM_024432	ENSMUSG00000019578	Ubxn6	1200008L11Rik|2210415J11Rik|AU040909|Ubxd1|Ubxdc2	UBX domain protein 6	protein-coding	0.065000	0.651741	
mm_151123.1	chr19	47865693	47865893	+	1	NA	NA	NA	-1	NM_026619	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.100000	0.681592	
mm_115394.1	chr13	113735916	113736116	+	1	NA	NA	NA	-58492	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.030000	0.527363	
mm_33454.1	chr4	130727542	130727742	+	1	NA	NA	NA	-21996	NR_028565	100217460		NR_028565	ENSMUSG00000065196	Snord85	MBII-251|Z50	small nucleolar RNA, C/D box 85	snoRNA	0.000000	0.407960	
mm_37930.1	chr4	132884420	132884620	-	1	NA	NA	NA	-62	NM_133887	100226	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	0.120000	0.676617	
mm_60379.1	chr7	44473440	44473640	+	1	NA	NA	NA	3193	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.015000	0.626866	-77(GGCCAGATAAGG,-,0.00)
mm_130497.1	chr15	98807899	98808099	-	1	NA	NA	NA	-74	NM_001013741	13199	Mm.390810	NM_001013741	ENSMUSG00000059213	Ddn	Gm748	dendrin	protein-coding	0.100000	0.686567	66(GGGTATATATAG,-,0.00)
mm_14900.1	chr2	149899583	149899783	+	1	NA	NA	NA	68900	NM_001085521	433485	Mm.330649	NM_001085521	ENSMUSG00000074736	Syndig1	AW123113|DSPC2|Gm14134|H2C20orf39|OTTMUSG00000015750|Tmem90b	synapse differentiation inducing 1	protein-coding	0.020000	0.567164	
mm_16544.1	chr2	181693586	181693786	+	1	NA	NA	NA	124	NM_001291206	56470	Mm.274366	NM_026446	ENSMUSG00000002458	Rgs19	2610042F04Rik|AI324841|AW547781|GAIP	regulator of G-protein signaling 19	protein-coding	0.055000	0.631841	
mm_117535.1	chr13	83572051	83572251	-	1	NA	NA	NA	-1456	NM_001347577	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.020000	0.512438	
mm_17399.1	chr2	27189388	27189588	-	1	NA	NA	NA	23981	NM_138942	13166	Mm.167781	NM_138942	ENSMUSG00000000889	Dbh	-	dopamine beta hydroxylase	protein-coding	0.010000	0.567164	
mm_16395.1	chr2	179442314	179442514	+	1	NA	NA	NA	-17	NM_001316723	12561	Mm.184711	NM_009867	ENSMUSG00000000305	Cdh4	AW120700|R-CAD|R-Cadh|Rcad	cadherin 4	protein-coding	0.160000	0.791045	-71(CTCCTTTAAGGC,-,0.00),-70(TCCTTTAAGGCC,+,0.00),-69(CCTTTAAGGCCC,+,0.00)
mm_74624.1	chr8	13105358	13105558	-	1	NA	NA	NA	-115	NM_178708	234069	Mm.103427	NM_178708	ENSMUSG00000038542	Pcid2	A730042J05Rik	PCI domain containing 2	protein-coding	0.115000	0.671642	
mm_69563.1	chr7	135700389	135700589	-	1	NA	NA	NA	15890	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.005000	0.422886	
mm_46426.1	chr5	104310025	104310225	-	1	NA	NA	NA	10838	NM_008318	15891	Mm.4987	NM_008318	ENSMUSG00000029306	Ibsp	BSP|BSP II|BSPII|Bsp2	integrin binding sialoprotein	protein-coding	0.055000	0.537313	
mm_47818.1	chr5	134229490	134229690	-	1	NA	NA	NA	35	NM_001286037	17969	Mm.425296	NM_010876	ENSMUSG00000015950	Ncf1	NCF-47K|NOXO2|Ncf-1|p47-phox|p47<phox>|p47phox	neutrophil cytosolic factor 1	protein-coding	0.025000	0.557214	-34(GTGTATTTAAGG,-,0.00),-32(GTATTTAAGGCC,+,0.00)
mm_78825.1	chr9	44107131	44107331	+	1	NA	NA	NA	-14	NM_001040631	235312	Mm.227110	NM_145613	ENSMUSG00000079592	C1qtnf5	Ctrp5	C1q and tumor necrosis factor related protein 5	protein-coding	0.035000	0.577114	
mm_134096.1	chr16	9919704	9919904	-	1	NA	NA	NA	72729	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.005000	0.477612	
mm_106395.1	chr11	118797638	118797838	-	1	NA	NA	NA	-36697	NM_001285438	52897	Mm.341103	NM_001024931	ENSMUSG00000025576	Rbfox3	Fox-3|Hrnbp3|NeuN|Neuna60	RNA binding protein, fox-1 homolog (C. elegans) 3	protein-coding	0.000000	0.388060	
mm_172060.1	chr6	132528021	132528221	-	1	NA	NA	NA	-41721	NM_011174	19131	Mm.425348	NM_011174	ENSMUSG00000059934	Prh1	MP2|Prp	proline rich protein HaeIII subfamily 1	protein-coding	0.040000	0.502488	
mm_24757.1	chr3	95443361	95443561	+	1	NA	NA	NA	9071	NM_001037737	11863	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	0.025000	0.427861	
mm_130781.1	chr15	101532722	101532922	-	1	NA	NA	NA	-2	NM_008474	16680	Mm.25292	NM_008474	ENSMUSG00000044294	Krt84	AV235125|HRb-1|Krt2-16|Krt2-3	keratin 84	protein-coding	0.020000	0.512438	
mm_7897.1	chr1	133493335	133493535	-	1	NA	NA	NA	-69223	NM_011439	20668	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	0.035000	0.606965	
mm_134795.1	chr16	24193539	24193739	-	1	NA	NA	NA	-199711	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.025000	0.462687	-57(ACTTTTAAGGCA,+,0.00)
mm_8826.1	chr1	162477913	162478113	-	1	NA	NA	NA	17	NM_001038619	103967	Mm.441620	NM_172646	ENSMUSG00000040265	Dnm3	9630020E24Rik|AW061159|B230343F03Rik|C530045C17|mKIAA0820	dynamin 3	protein-coding	0.080000	0.656716	
mm_1408.1	chr1	67153410	67153610	+	1	NA	NA	NA	30483	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.010000	0.348259	
mm_129459.1	chr15	78572630	78572830	-	1	NA	NA	NA	53	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.020000	0.616915	
mm_70302.1	chr8	4087465	4087665	+	1	NA	NA	NA	18199	NM_026956	69142	Mm.171061	NM_026956	ENSMUSG00000051906	Cd209f	1810029C22Rik|AI647041|SIGNR8	CD209f antigen	protein-coding	0.070000	0.696517	
mm_134084.1	chr16	8738826	8739026	-	1	NA	NA	NA	-584	NM_001003918	252870	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.170000	0.756219	
mm_111952.1	chr12	109539667	109539867	-	1	NA	NA	NA	-1229	NR_027652	17263	Mm.289645	NM_144513	ENSMUSG00000021268	Meg3	2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394	maternally expressed 3	ncRNA	0.045000	0.631841	
mm_126793.1	chr15	86334379	86334579	+	1	NA	NA	NA	120020	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.015000	0.557214	
mm_122598.1	chr14	50938984	50939184	-	1	NA	NA	NA	-5219	NM_013632	18950	Mm.17932	NM_013632	ENSMUSG00000021871	Pnp	AL024301|AU015798|Np|Np-1|Np-2|Pnp1	purine-nucleoside phosphorylase	protein-coding	0.005000	0.462687	
mm_116064.1	chr13	27564504	27564704	-	1	NA	NA	NA	2	NM_001316721	67310	Mm.46091	NM_023332	ENSMUSG00000006490	Prl8a9	1600019F10Rik|Ghd15|PLP-C2|PLP-Cbeta|Prlpc2	prolactin family8, subfamily a, member 9	protein-coding	0.005000	0.417910	
mm_54432.1	chr6	34176825	34177025	-	1	NA	NA	NA	129	NM_021435	58246	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0.105000	0.671642	
mm_161642.1	chr16	96192216	96192416	-	1	NA	NA	NA	-59	NM_001001492	385668	Mm.24626	NM_001001492	ENSMUSG00000045275	Lca5l	4921526F01Rik|Lcca5l	Leber congenital amaurosis 5-like	protein-coding	0.095000	0.651741	
mm_117318.1	chr13	67637689	67637889	-	1	NA	NA	NA	-36	NM_183146	212281	Mm.342918	NM_183146	ENSMUSG00000021510	Zfp729a	A530054K11Rik|Rslcan3	zinc finger protein 729a	protein-coding	0.025000	0.497512	
mm_17425.1	chr2	27456897	27457097	-	1	NA	NA	NA	-6367	NR_106102	102466836		NR_106102	ENSMUSG00000098812	Mir7578	Gm27789|mmu-mir-7578	microRNA 7578	ncRNA	0.020000	0.502488	
mm_148529.1	chr19	4517696	4517896	+	1	NA	NA	NA	7324	NM_001162946	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.010000	0.457711	
mm_28893.1	chr3	97888736	97888936	-	1	NA	NA	NA	-129	NM_001289701	83679	Mm.129840	NM_031401	ENSMUSG00000038170	Pde4dip	4732458A06Rik|9430063L05Rik|C87016|D130016K21Rik|D3Bwg1078e|Usmg4|mKIAA0454	phosphodiesterase 4D interacting protein (myomegalin)	protein-coding	0.060000	0.631841	
mm_21402.1	chr2	157794164	157794364	-	1	NA	NA	NA	56863	NM_025680	66642	Mm.45193	NM_025680	ENSMUSG00000027649	Ctnnbl1	5730471K09Rik|NAP|NYD-SP19|P14L	catenin, beta like 1	protein-coding	0.010000	0.512438	
mm_172313.1	chr7	105953878	105954078	-	1	NA	NA	NA	-8	NM_029000	74558	Mm.458429	NM_029000	ENSMUSG00000045868	Gvin1	9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1	GTPase, very large interferon inducible 1	protein-coding	0.005000	0.502488	-6(CCTCATAGAGCC,+,0.00)
mm_13399.1	chr2	103970189	103970389	+	1	NA	NA	NA	2	NM_001142335	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.155000	0.791045	
mm_38654.1	chr4	143299374	143299574	-	1	NA	NA	NA	90	NM_010329	14726	Mm.2976	NM_010329	ENSMUSG00000028583	Pdpn	Gp38|OTS-8|RANDAM-2|T1-alpha|T1a|T1alpha	podoplanin	protein-coding	0.070000	0.641791	
mm_58962.1	chr7	18950366	18950566	+	1	NA	NA	NA	24578	NM_001029877	384569	Mm.262724	NM_001029877	ENSMUSG00000030411	Nova2	Gm1424	neuro-oncological ventral antigen 2	protein-coding	0.025000	0.522388	
mm_156780.1	chrX	161716932	161717132	+	1	NA	NA	NA	-4	NM_001103367	24004	Mm.328503	NM_198409	ENSMUSG00000043518	Rai2	3f8	retinoic acid induced 2	protein-coding	0.065000	0.661692	
mm_172084.1	chr6	145932902	145933102	-	1	NA	NA	NA	1129	NM_001310837	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.050000	0.542289	
mm_71400.1	chr8	46207472	46207672	+	1	NA	NA	NA	3437	NM_007450	11739	Mm.16228	NM_007450	ENSMUSG00000031633	Slc25a4	AU019225|Ant1	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4	protein-coding	0.020000	0.457711	
mm_53262.1	chr6	127913759	127913959	+	1	NA	NA	NA	26237	NM_026743	68498	Mm.174368	NM_026743	ENSMUSG00000030351	Tspan11	1110014F12Rik|AU067806	tetraspanin 11	protein-coding	0.005000	0.477612	
mm_93938.1	chr10	127188733	127188933	-	1	NA	NA	NA	990	NM_001166413	52666	Mm.272230	NM_028027	ENSMUSG00000019467	Arhgef25	2410008H17Rik|D10Ertd610e|GEFT	Rho guanine nucleotide exchange factor (GEF) 25	protein-coding	0.105000	0.776119	
mm_13433.1	chr2	105126189	105126389	+	1	NA	NA	NA	221	NR_015462	329480	Mm.246679	NR_015462	ENSMUSG00000074987	Wt1os	6030498F17|AI314831|Wt1-as	Wilms tumor 1 homolog, opposite strand	ncRNA	0.040000	0.626866	
mm_89948.1	chr10	111284290	111284490	+	1	NA	NA	NA	-14289	NM_027914	71769	Mm.45256	NM_027914	ENSMUSG00000035759	Bbs10	1300007O09Rik|AI452285	Bardet-Biedl syndrome 10 (human)	protein-coding	0.005000	0.298507	-71(TTTTTTAAAAGC,-,0.00),-70(TTTTTAAAAGCC,+,0.00),-60(CCATTTCTAGGG,+,0.00)
mm_49971.1	chr6	40768951	40769151	+	1	NA	NA	NA	118443	NM_139296	194357	Mm.207087	NM_139296	ENSMUSG00000029885	Moxd2	Dbhl1	monooxygenase, DBH-like 2	protein-coding	0.000000	0.323383	
mm_45940.1	chr5	90243756	90243956	-	1	NA	NA	NA	-19860	NM_001163456	231430	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	0.005000	0.472637	
mm_170588.1	chr19	5799826	5800026	-	1	NA	NA	NA	2746	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.005000	0.393035	
mm_63545.1	chr7	128063633	128063833	+	1	NA	NA	NA	1093	NM_008401	16409	Mm.262106	NM_008401	ENSMUSG00000030786	Itgam	CD11b/CD18|CR3|CR3A|Cd11b|F730045J24Rik|Ly-40|MAC1|Mac-1|Mac-1a	integrin alpha M	protein-coding	0.005000	0.437811	
mm_49833.1	chr6	37870842	37871042	+	1	NA	NA	NA	131	NM_145076	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.175000	0.751244	
mm_39001.1	chr4	151861630	151861830	-	1	NA	NA	NA	38	NM_001081557	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.160000	0.781095	
mm_101767.1	chr11	43836177	43836377	-	1	NA	NA	NA	212	NM_007416	11548	Mm.39086	NM_007416	ENSMUSG00000050541	Adra1b	[a]1b	adrenergic receptor, alpha 1b	protein-coding	0.095000	0.696517	
mm_6022.1	chr1	59120007	59120207	-	1	NA	NA	NA	-11	NM_001033449	381259	Mm.261275	NM_001033449	ENSMUSG00000038079	Tmem237	AI853305|Als2cr4|Gm972	transmembrane protein 237	protein-coding	0.100000	0.676617	
mm_143177.1	chr17	57247237	57247437	-	1	NA	NA	NA	133	NM_001308074	78308	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0.040000	0.601990	
mm_13865.1	chr2	119798384	119798584	+	1	NA	NA	NA	744	NM_001290800	22174	Mm.2901	NM_019392	ENSMUSG00000027298	Tyro3	AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1	TYRO3 protein tyrosine kinase 3	protein-coding	0.010000	0.527363	
mm_34100.1	chr4	138972803	138973003	+	1	NA	NA	NA	-2	NM_029857	77056	Mm.122336	NM_029857	ENSMUSG00000041143	Tmco4	4632413C14Rik|AI430825	transmembrane and coiled-coil domains 4	protein-coding	0.030000	0.552239	
mm_153279.1	chr19	37207367	37207567	-	1	NA	NA	NA	4	NM_198300	208922	Mm.391176	NM_198300	ENSMUSG00000039652	Cpeb3	4831444O18Rik|CPE-BP3|mKIAA0940	cytoplasmic polyadenylation element binding protein 3	protein-coding	0.135000	0.761194	
mm_154833.1	chrX	18162959	18163159	+	1	NA	NA	NA	484	NM_001310444	22289	Mm.257498	NM_009483	ENSMUSG00000037369	Kdm6a	Utx	lysine (K)-specific demethylase 6A	protein-coding	0.135000	0.671642	
mm_139923.1	chr17	71019190	71019390	+	1	NA	NA	NA	-267	NM_010867	17929	Mm.4103	NM_010867	ENSMUSG00000024049	Myom1	D430047A17Rik	myomesin 1	protein-coding	0.025000	0.427861	
mm_121837.1	chr14	20546372	20546572	-	1	NA	NA	NA	101	NM_001310426	19056	Mm.274432	NM_008914	ENSMUSG00000021816	Ppp3cb	1110063J16Rik|Calnb|CnAbeta|Cnab	protein phosphatase 3, catalytic subunit, beta isoform	protein-coding	0.130000	0.810945	
mm_71643.1	chr8	57589570	57589770	+	1	NA	NA	NA	-62083	NR_040698	100502619	Mm.393851	NR_040698		AW046200	-	expressed sequence AW046200	ncRNA	0.005000	0.417910	-98(TCCTTTTTATGG,-,0.00),-96(CTTTTTATGGGT,+,0.00),-32(GACTATAAAAAT,-,0.00)
mm_56203.1	chr6	88898589	88898789	-	1	NA	NA	NA	91	NM_008564	17216	Mm.16711	NM_008564	ENSMUSG00000002870	Mcm2	AA959861|AW476101|BM28|CDCL1|Mcmd2|mKIAA0030	minichromosome maintenance complex component 2	protein-coding	0.105000	0.636816	
mm_117172.1	chr13	62888287	62888487	-	1	NA	NA	NA	-105	NM_019395	14121	Mm.423078	NM_019395	ENSMUSG00000069805	Fbp1	Fbp-2|Fbp2|Fbp3	fructose bisphosphatase 1	protein-coding	0.025000	0.606965	
mm_111734.1	chr12	103855785	103855985	-	1	NA	NA	NA	7734	NM_001252569	20700	Mm.439692	NM_009243	ENSMUSG00000066366	Serpina1a	Aat-2|Aat2|Dom1|PI1|Spi1-1|Spi1-3	serine (or cysteine) peptidase inhibitor, clade A, member 1A	protein-coding	0.030000	0.562189	
mm_57436.1	chr6	124917659	124917859	-	1	NA	NA	NA	187	NM_026988	69202	Mm.142187	NM_026988	ENSMUSG00000030122	Ptms	2610009E16Rik	parathymosin	protein-coding	0.155000	0.805970	
mm_51857.1	chr6	90465194	90465394	+	1	NA	NA	NA	2668	NM_023184	66277	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.015000	0.537313	
mm_125163.1	chr15	31268164	31268364	+	1	NA	NA	NA	43879	NM_146057	223453	Mm.222867	NM_146057	ENSMUSG00000039168	Dap	4921531N22Rik|AI789753|AU040360	death-associated protein	protein-coding	0.010000	0.497512	
mm_54189.1	chr6	24212229	24212429	-	1	NA	NA	NA	-44237	NM_019481	55961	Mm.19299	NM_019481	ENSMUSG00000029700	Slc13a1	AI314066|AI987826|NaSi-1|Nas1	solute carrier family 13 (sodium/sulfate symporters), member 1	protein-coding	0.005000	0.457711	
mm_102633.1	chr11	62539161	62539361	-	1	NA	NA	NA	0	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.135000	0.751244	
mm_160211.1	chr7	97919631	97919831	+	1	NA	NA	NA	-227	NM_177696	233537	Mm.375772	NM_177696	ENSMUSG00000035582	Gdpd4	4921513O04	glycerophosphodiester phosphodiesterase domain containing 4	protein-coding	0.020000	0.348259	
mm_106192.1	chr11	116816130	116816330	-	1	NA	NA	NA	11816	NM_026280	67622	Mm.64962	NM_026280	ENSMUSG00000020814	Mxra7	1810057P16Rik|E130302J09Rik	matrix-remodelling associated 7	protein-coding	0.010000	0.582090	
mm_162055.1	chrX	7823733	7823933	+	1	NA	NA	NA	74	NM_008423	16506	Mm.335968	NM_008423	ENSMUSG00000009731	Kcnd1	1110037K09Rik|Kca2-1|Kv4.1|Shal|Shal1|mShal1	potassium voltage-gated channel, Shal-related family, member 1	protein-coding	0.020000	0.616915	
mm_3550.1	chr1	150414400	150414600	+	1	NA	NA	NA	-21445	NM_145511	226499	Mm.222093	NM_145511	ENSMUSG00000006010	BC003331	1810053E15Rik|Odr4|odr-4	cDNA sequence BC003331	protein-coding	0.015000	0.393035	
mm_87673.1	chr10	58827121	58827321	+	1	NA	NA	NA	13862	NM_172788	237353	Mm.333078	NM_172788	ENSMUSG00000037990	Sh3rf3	4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31	SH3 domain containing ring finger 3	protein-coding	0.015000	0.477612	-36(CCTCTTATAGGC,+,0.00)
mm_34748.1	chr4	152297167	152297367	+	1	NA	NA	NA	53	NM_133788	57295	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|OTTMUSG00000010406|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	0.155000	0.736318	
mm_9940.1	chr1	190170608	190170808	-	1	NA	NA	NA	-28	NM_008937	19130	Mm.132579	NM_008937	ENSMUSG00000010175	Prox1	A230003G05Rik	prospero homeobox 1	protein-coding	0.085000	0.616915	
mm_28246.1	chr3	88503155	88503355	-	1	NA	NA	NA	97	NM_001111102	16905	Mm.243014	NM_019390	ENSMUSG00000028063	Lmna	Dhe	lamin A	protein-coding	0.060000	0.651741	-87(GCCTATTAGAGC,-,0.00)
mm_147602.1	chr18	56846250	56846450	-	1	NA	NA	NA	79198	NM_177115	320253	Mm.312623	NM_177115	ENSMUSG00000032656	March3	6330411I15Rik|A530081L18Rik|AI843639|MARCH-III	membrane-associated ring finger (C3HC4) 3	protein-coding	0.000000	0.427861	
mm_160166.1	chr7	44748206	44748406	-	1	NA	NA	NA	43	NM_001289836	243963	Mm.382935	NM_178734	ENSMUSG00000048012	Zfp473	D030014N22Rik|Znf473|zfp-100	zinc finger protein 473	protein-coding	0.025000	0.442786	
mm_86311.1	chr9	122843898	122844098	-	1	NA	NA	NA	22008	NM_173364	235682	Mm.326477	NM_173364	ENSMUSG00000047036	Zfp445	AW610627|ZNF168|Znf445|mszf29|mszf50	zinc finger protein 445	protein-coding	0.000000	0.537313	
mm_71351.1	chr8	45658186	45658386	+	1	NA	NA	NA	-3707	NM_001310708	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.005000	0.432836	
mm_168795.1	chr12	19490179	19490379	+	1	NA	NA	NA	975769	NM_001201330	236366	Mm.352227	NM_001033157	ENSMUSG00000073197	5730507C01Rik	-	RIKEN cDNA 5730507C01 gene	protein-coding	0.105000	0.756219	
mm_32366.1	chr4	105258448	105258648	+	1	NA	NA	NA	101201	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.010000	0.412935	
mm_88419.1	chr10	77196298	77196498	+	1	NA	NA	NA	-29868	NM_009929	12822	Mm.4352	NM_009929	ENSMUSG00000001435	Col18a1	-	collagen, type XVIII, alpha 1	protein-coding	0.005000	0.557214	
mm_1747.1	chr1	75505509	75505709	+	1	NA	NA	NA	843	NM_178884	98733	Mm.236454	NM_178884	ENSMUSG00000026211	Obsl1	AW822216	obscurin-like 1	protein-coding	0.145000	0.736318	
mm_157558.1	chrX	52053062	52053262	-	1	NA	NA	NA	-80390	NM_028851	74279	Mm.159154	NM_028851	ENSMUSG00000031118	1700080O16Rik	-	RIKEN cDNA 1700080O16 gene	protein-coding	0.005000	0.383085	
mm_148168.1	chr18	78049352	78049552	-	1	NA	NA	NA	7816	NM_001101038	620235	Mm.35607	NM_001101038	ENSMUSG00000091055	Siglec15	Cd33l3|EG620235|SIGLEC-I	sialic acid binding Ig-like lectin 15	protein-coding	0.020000	0.532338	14(GCCTTTAGGGCG,+,0.00)
mm_7894.1	chr1	133422606	133422806	-	1	NA	NA	NA	1506	NM_011439	20668	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	0.035000	0.557214	
mm_71627.1	chr8	57436388	57436588	+	1	NA	NA	NA	-19435	NM_009136	20284	Mm.12886	NM_009136	ENSMUSG00000031610	Scrg1	AW124307	scrapie responsive gene 1	protein-coding	0.015000	0.507463	
mm_157125.1	chrX	9446018	9446218	-	1	NA	NA	NA	23206	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.323383	
mm_44665.1	chr5	29364996	29365196	-	1	NA	NA	NA	13294	NM_020295	56873	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0.015000	0.452736	
mm_125245.1	chr15	34495225	34495425	+	1	NA	NA	NA	14	NM_152894	67724	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0.085000	0.606965	
mm_87990.1	chr10	64608330	64608530	+	1	NA	NA	NA	-518175	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.015000	0.343284	
mm_154323.1	chrM	2251	2451	+	1	NA	NA	NA	NA	NA									0.035000	0.393035	37(TCCTATTTAAGA,-,0.00)
mm_21326.1	chr2	157101184	157101384	-	1	NA	NA	NA	14229	NM_001177439	383766	Mm.480305	NM_001177439	ENSMUSG00000074628	Tldc2	Gm1332	TBC/LysM associated domain containing 2	protein-coding	0.020000	0.472637	
mm_27578.1	chr3	58822291	58822491	-	1	NA	NA	NA	62821	NM_153386	229320	Mm.131502	NM_153384	ENSMUSG00000043850	Clrn1	A130002D11Rik|USH3|Ush3a|clarin-1	clarin 1	protein-coding	0.010000	0.507463	
mm_104205.1	chr11	88026635	88026835	-	1	NA	NA	NA	-20638	NM_001078167	110809	Mm.391719	NM_173374	ENSMUSG00000018379	Srsf1	1110054N12Rik|5730507C05Rik|6330415C05Rik|AI482334|AW491331|Asf|Sf2|Sfrs1	serine/arginine-rich splicing factor 1	protein-coding	0.030000	0.502488	
mm_112822.1	chr13	20801516	20801716	+	1	NA	NA	NA	7503	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.383085	
mm_27571.1	chr3	58687012	58687212	-	1	NA	NA	NA	5276	NM_009174	20439	Mm.2847	NM_009174	ENSMUSG00000036432	Siah2	AA415433|Sinh2	seven in absentia 2	protein-coding	0.000000	0.358209	-65(TCCTTTAAAGTG,+,0.00)
mm_95889.1	chr11	58117638	58117838	+	1	NA	NA	NA	13585	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.005000	0.462687	
mm_4096.1	chr1	167349921	167350121	+	1	NA	NA	NA	30	NM_019993	56752	Mm.292539	NM_019993	ENSMUSG00000026687	Aldh9a1	AA139417|Abaldh|ESTM40|TMABA-DH|Tmabadh	aldehyde dehydrogenase 9, subfamily A1	protein-coding	0.045000	0.661692	
mm_97374.1	chr11	77687163	77687363	+	1	NA	NA	NA	1124	NM_001024205	68564	Mm.428996	NM_001024205	ENSMUSG00000037857	Nufip2	1110001M19Rik|9530056D24Rik|AI256692|AI461731|PIG1|mKIAA1321	nuclear fragile X mental retardation protein interacting protein 2	protein-coding	0.120000	0.736318	
mm_157216.1	chrX	12994550	12994750	-	1	NA	NA	NA	-47365	NR_038158	70489	Mm.383563	NR_038158	ENSMUSG00000087424	5730405O15Rik	-	RIKEN cDNA 5730405O15 gene	ncRNA	0.030000	0.388060	
mm_123804.1	chr14	70520879	70521079	-	1	NA	NA	NA	-719	NR_033241	12153	Mm.27757	NM_009755	ENSMUSG00000022098	Bmp1	Pcp|Tld	bone morphogenetic protein 1	protein-coding	0.030000	0.502488	
mm_149534.1	chr19	12464844	12465044	+	1	NA	NA	NA	4165	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.010000	0.427861	
mm_119516.1	chr14	47421777	47421977	+	1	NA	NA	NA	-3470	NM_144553	218977	Mm.240543	NM_144553	ENSMUSG00000037544	Dlgap5	C77459|C86398|Dap-5|Dlg7|Hurp|mKIAA0008	discs, large (Drosophila) homolog-associated protein 5	protein-coding	0.010000	0.547264	-33(CACTATAAAAGG,-,0.00)
mm_1261.1	chr1	63176953	63177153	+	1	NA	NA	NA	222	NM_018796	55949	Mm.2718	NM_018796	ENSMUSG00000025967	Eef1b2	2810017J07Rik|Eef1b	eukaryotic translation elongation factor 1 beta 2	protein-coding	0.085000	0.582090	43(CTCTATATAAGG,-,0.00)
mm_80795.1	chr9	96258604	96258804	+	1	NA	NA	NA	-1	NM_001184709	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.010000	0.502488	
mm_68115.1	chr7	102099838	102100038	-	1	NA	NA	NA	291	NR_111935	11875	Mm.2816	NM_007491	ENSMUSG00000070424	Art5	ARTC5|Yac-2	ADP-ribosyltransferase 5	protein-coding	0.050000	0.597015	
mm_4675.1	chr1	180420937	180421137	+	1	NA	NA	NA	62467	NM_001081227	381310	Mm.44791	NM_001081227	ENSMUSG00000053963	Stum	6330403A02Rik|ENSMUSG00000056615|Gm10001|R75555	mechanosensory transduction mediator	protein-coding	0.015000	0.557214	
mm_145682.1	chr18	61628257	61628457	+	1	NA	NA	NA	-11296	NR_045420	545261	Mm.426593	NR_045420	ENSMUSG00000098098	Bvht	Braveheart|Gm20748	braveheart long non-coding RNA	ncRNA	0.025000	0.567164	
mm_163209.1	chr11	99610150	99610350	-	1	NA	NA	NA	-61	NM_001099346	100041488	Mm.465212	NM_001099346	ENSMUSG00000058725	Gm11937	-	predicted gene 11937	protein-coding	0.000000	0.532338	-34(AGGTATATAAAG,-,0.00),-32(GTATATAAAGGG,-,0.00)
mm_64282.1	chr7	141819034	141819234	+	1	NA	NA	NA	-19938	NM_028801	74180	Mm.200752	NM_028801	ENSMUSG00000066108	Muc5b	2300002I04Rik|A130042M24|AV085033|MUC5|MUC9|mucin 5b	mucin 5, subtype B, tracheobronchial	protein-coding	0.010000	0.467662	
mm_128781.1	chr15	66801513	66801713	-	1	NA	NA	NA	30216	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.010000	0.477612	-34(CCCCTTTTAAGA,-,0.00),-32(CCTTTTAAGAAG,+,0.00)
mm_119185.1	chr14	32318076	32318276	+	1	NA	NA	NA	-3843	NM_001081130	239017	Mm.318302	NM_001081130	ENSMUSG00000021913	Ogdhl	-	oxoglutarate dehydrogenase-like	protein-coding	0.005000	0.517413	
mm_57885.1	chr6	131353445	131353645	-	1	NA	NA	NA	34905	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.015000	0.577114	
mm_30585.1	chr4	5644072	5644272	+	1	NA	NA	NA	-7	NM_173426	242297	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0.115000	0.741294	
mm_143748.1	chr17	81561856	81562056	-	1	NA	NA	NA	176431	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.010000	0.398010	
mm_82266.1	chr9	7176932	7177132	-	1	NA	NA	NA	14	NM_029851	110350	Mm.237596	NM_029851	ENSMUSG00000047193	Dync2h1	4432416O06Rik|AI448217|D030010H02Rik|D330044F14Rik|DHC1b|DHC2|Dnchc2|b2b414Clo|mKIAA1997	dynein cytoplasmic 2 heavy chain 1	protein-coding	0.070000	0.597015	
mm_158465.1	chrX	140822465	140822665	-	1	NA	NA	NA	-9132	NM_031381	83555	Mm.193025	NM_031381	ENSMUSG00000042386	Tex13b	4933403J23Rik|Tex13	testis expressed 13B	protein-coding	0.045000	0.462687	-32(GTCTATAAGAAG,-,0.00)
mm_98769.1	chr11	96658668	96658868	+	1	NA	NA	NA	118787	NM_028965	74479	Mm.270781	NM_028965	ENSMUSG00000020876	Snx11	4933439F10Rik|A930041K09Rik|AI117694	sorting nexin 11	protein-coding	0.005000	0.477612	
mm_31683.1	chr4	62297982	62298182	+	1	NA	NA	NA	6535	NM_001290518	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.000000	0.462687	
mm_73933.1	chr8	119992413	119992613	+	1	NA	NA	NA	75	NM_001310635	78892	Mm.264680	NM_030209	ENSMUSG00000031825	Crispld2	1810049K24Rik|Lcrisp2|Lgl1|coffeecrisp	cysteine-rich secretory protein LCCL domain containing 2	protein-coding	0.055000	0.646766	
mm_121206.1	chr14	103053314	103053514	+	1	NA	NA	NA	6402	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.030000	0.547264	
mm_168471.1	chr11	48752524	48752724	-	1	NA	NA	NA	-47736	NM_008143	14694	Mm.5305	NM_008143	ENSMUSG00000020372	Rack1	AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205	receptor for activated C kinase 1	protein-coding	0.005000	0.412935	
mm_29717.1	chr3	124425893	124426093	-	1	NA	NA	NA	35	NM_027939	71824	Mm.331353	NM_027939	ENSMUSG00000027973	1700006A11Rik	-	RIKEN cDNA 1700006A11 gene	protein-coding	0.005000	0.427861	
mm_165931.1	chr4	65407920	65408120	+	1	NA	NA	NA	-196966	NM_053084	69807	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0.005000	0.487562	
mm_119925.1	chr14	54968663	54968863	+	1	NA	NA	NA	-24	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.005000	0.547264	
mm_46723.1	chr5	110762360	110762560	-	1	NA	NA	NA	8257	NM_029337	75560	Mm.270487	NM_029337	ENSMUSG00000029505	Ep400	1700020J09Rik|AU023439|mDomino|mKIAA1498|p400	E1A binding protein p400	protein-coding	0.000000	0.373134	
mm_87810.1	chr10	60301717	60301917	+	1	NA	NA	NA	17356	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.010000	0.482587	
mm_35280.1	chr4	20778602	20778802	-	1	NA	NA	NA	-34	NM_172987	269513	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding	0.025000	0.572139	47(TCCCCTAAAAGA,-,0.00)
mm_74316.1	chr8	126736744	126736944	+	1	NA	NA	NA	-143408	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.030000	0.492537	-72(TTTTTTAAAGAG,+,0.00),-48(CCTTTTATAGGG,+,0.00)
mm_135527.1	chr16	49255683	49255883	-	1	NA	NA	NA	198297	NM_001166210	667772	Mm.301387	NM_001166210	ENSMUSG00000092009	Myh15	EG667772	myosin, heavy chain 15	protein-coding	0.030000	0.482587	
mm_164614.1	chr17	31161381	31161581	-	1	NA	NA	NA	3572	NM_009362	21784	Mm.2854	NM_009362	ENSMUSG00000024032	Tff1	Bcei|PS2	trefoil factor 1	protein-coding	0.015000	0.502488	
mm_73121.1	chr8	94779728	94779928	+	1	NA	NA	NA	7648	NM_009142	20312	Mm.103711	NM_009142	ENSMUSG00000031778	Cx3cl1	AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1	chemokine (C-X3-C motif) ligand 1	protein-coding	0.025000	0.557214	
mm_53677.1	chr6	141881018	141881218	+	1	NA	NA	NA	-24947	NM_030687	28250	Mm.255586	NM_030687	ENSMUSG00000030237	Slco1a4	AI785519|Oatp1a4|Oatp2|Slc21a5	solute carrier organic anion transporter family, member 1a4	protein-coding	0.005000	0.333333	3(GGCTTTTAATAG,-,0.00),5(CTTTTAATAGAA,+,0.00)
mm_72473.1	chr8	83575945	83576145	+	1	NA	NA	NA	9287	NM_025843	66916	Mm.29683	NM_025843	ENSMUSG00000033938	Ndufb7	1110002H15Rik	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7	protein-coding	0.015000	0.567164	
mm_58368.1	chr6	148896081	148896281	-	1	NA	NA	NA	56	NM_001301351	232560	Mm.150568	NM_181541	ENSMUSG00000030309	Caprin2	C1qdc1|Eeg1|rng140	caprin family member 2	protein-coding	0.115000	0.701493	
mm_19837.1	chr2	112454817	112455017	-	1	NA	NA	NA	-108	NM_133749	73024	Mm.268027	NM_133749	ENSMUSG00000055943	Emc7	2900064A13Rik|AI451465|ORF3|c11orf3	ER membrane protein complex subunit 7	protein-coding	0.085000	0.616915	59(GGGCTTAAAAGG,-,0.00),61(GCTTAAAAGGTG,+,0.00)
mm_36991.1	chr4	110234284	110234484	-	1	NA	NA	NA	52450	NM_010488	15572	Mm.3970	NM_010488	ENSMUSG00000028546	Elavl4	Elav|Hud|PNEM	ELAV (embryonic lethal, abnormal vision, Drosophila)-like 4 (Hu antigen D)	protein-coding	0.000000	0.283582	
mm_91688.1	chr10	43980197	43980397	-	1	NA	NA	NA	24549	NM_172393	11630	Mm.292082	NM_172393	ENSMUSG00000019866	Aim1	AI462491|AI463325	absent in melanoma 1	protein-coding	0.005000	0.542289	-62(GTTTTTATGGCT,+,0.00)
mm_109755.1	chr12	117763419	117763619	+	1	NA	NA	NA	-80342	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.010000	0.512438	
mm_13605.1	chr2	113285640	113285840	+	1	NA	NA	NA	8	NM_029232	75275	Mm.159484	NM_029232	ENSMUSG00000041255	Tmco5b	4930563P21Rik	transmembrane and coiled-coil domains 5B	protein-coding	0.005000	0.422886	
mm_111441.1	chr12	96047053	96047253	-	1	NA	NA	NA	69	NR_103800	69423	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0.015000	0.492537	
mm_130335.1	chr15	97731064	97731264	-	1	NA	NA	NA	241	NM_001168693	19011	Mm.1001	NM_008902	ENSMUSG00000022468	Endou	Pp11r|Tcl-30	endonuclease, polyU-specific	protein-coding	0.015000	0.532338	-90(CCTTTTATAGTG,+,0.00)
mm_91868.1	chr10	59469369	59469569	-	1	NA	NA	NA	-27690	NM_010959	18302	Mm.123013	NM_010959	ENSMUSG00000009654	Oit3	EF-9|LZP	oncoprotein induced transcript 3	protein-coding	0.020000	0.412935	
mm_155538.1	chrX	74304082	74304282	+	1	NA	NA	NA	-830	NM_010273	14567	Mm.205830	NM_010273	ENSMUSG00000015291	Gdi1	GDIA|GDIalpha	guanosine diphosphate (GDP) dissociation inhibitor 1	protein-coding	0.010000	0.472637	
mm_128908.1	chr15	73487173	73487373	-	1	NA	NA	NA	-25287	NM_001081066	105841	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.005000	0.557214	
mm_79315.1	chr9	52069603	52069803	+	1	NA	NA	NA	-20998	NR_023357	629557	Mm.422775	NR_023357		Gm6981	EG629557	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.025000	0.427861	
mm_171668.1	chr4	46584367	46584567	+	1	NA	NA	NA	17462	NM_001164804	107684	Mm.416311	NM_178893	ENSMUSG00000028337	Coro2a	9030208C03Rik|AI563590|IR10	coronin, actin binding protein 2A	protein-coding	0.020000	0.402985	
mm_70568.1	chr8	13159055	13159255	+	1	NA	NA	NA	-6	NM_001317353	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.105000	0.691542	
mm_24530.1	chr3	93277546	93277746	+	1	NA	NA	NA	-42103	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.005000	0.407960	
mm_151999.1	chr19	5902579	5902779	-	1	NA	NA	NA	-8572	NM_198634	332359	Mm.329642	NM_198634	ENSMUSG00000044390	Tigd3	-	tigger transposable element derived 3	protein-coding	0.025000	0.562189	
mm_54082.1	chr6	15728098	15728298	-	1	NA	NA	NA	7537	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.010000	0.462687	-39(AGCTCTATAAAG,-,0.00)
mm_126487.1	chr15	81616719	81616919	+	1	NA	NA	NA	30605	NM_177821	328572	Mm.258397	NM_177821	ENSMUSG00000055024	Ep300	A430090G16|A730011L11|KAT3B|p300|p300 HAT	E1A binding protein p300	protein-coding	0.015000	0.482587	
mm_82265.1	chr9	7176884	7177084	-	1	NA	NA	NA	62	NM_029851	110350	Mm.237596	NM_029851	ENSMUSG00000047193	Dync2h1	4432416O06Rik|AI448217|D030010H02Rik|D330044F14Rik|DHC1b|DHC2|Dnchc2|b2b414Clo|mKIAA1997	dynein cytoplasmic 2 heavy chain 1	protein-coding	0.075000	0.577114	
mm_49670.1	chr6	31314025	31314225	+	1	NA	NA	NA	84648	NR_040300	100503869	Mm.370532	NR_040300	ENSMUSG00000086212	Mkln1os	Gm13845|OTTMUSG00000014733	muskelin 1, intracellular mediator containing kelch motifs, opposite strand	ncRNA	0.010000	0.412935	
mm_160309.1	chr7	141063544	141063744	+	1	NA	NA	NA	2370	NM_177897	330671	Mm.133741	NM_177897	ENSMUSG00000055629	B4galnt4	BC038881|Gm1095|beta4GalNAcT4	beta-1,4-N-acetyl-galactosaminyl transferase 4	protein-coding	0.010000	0.492537	-30(GTATATATAGCC,+,0.00)
mm_135689.1	chr16	52427722	52427922	-	1	NA	NA	NA	25259	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.015000	0.363184	
mm_125320.1	chr15	38299411	38299611	+	1	NA	NA	NA	1200	NM_013692	21847	Mm.4292	NM_013692	ENSMUSG00000037465	Klf10	AI115143|EGR[a]|Egral|Gdnfif|TIEG-1|Tieg|Tieg1|mGIF	Kruppel-like factor 10	protein-coding	0.120000	0.766169	
mm_54561.1	chr6	37407602	37407802	-	1	NA	NA	NA	34446	NM_178661	208647	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.020000	0.378109	
mm_144777.1	chr18	35829734	35829934	+	1	NA	NA	NA	16	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.125000	0.746269	
mm_126581.1	chr15	82292699	82292899	+	1	NA	NA	NA	-6185	NM_029066	74716	Mm.159315	NM_029066	ENSMUSG00000022455	Wbp2nl	4930521I23Rik|PAWP	WBP2 N-terminal like	protein-coding	0.005000	0.432836	
mm_88233.1	chr10	71181277	71181477	+	1	NA	NA	NA	663	NR_038040	319572	Mm.211663	NR_038040		C730027H18Rik	-	RIKEN cDNA C730027H18 gene	ncRNA	0.000000	0.402985	
mm_152284.1	chr19	8921747	8921947	-	1	NA	NA	NA	1454	NM_024256	72727	Mm.259	NM_024256	ENSMUSG00000071649	B3gat3	2810405M13Rik	beta-1,3-glucuronyltransferase 3 (glucuronosyltransferase I)	protein-coding	0.030000	0.616915	
mm_160543.1	chr9	44287439	44287639	-	1	NA	NA	NA	705	NM_138955	192663	Mm.101876	NM_138955	ENSMUSG00000032131	Abcg4	6430517O04Rik	ATP-binding cassette, sub-family G (WHITE), member 4	protein-coding	0.060000	0.671642	
mm_143052.1	chr17	56982011	56982211	-	1	NA	NA	NA	15	NM_175731	171168	Mm.218784	NM_175731	ENSMUSG00000045019	Acer1	2310024P18Rik|AI662009|Alkcdase1|Asah3|Cer1	alkaline ceramidase 1	protein-coding	0.010000	0.567164	
mm_47341.1	chr5	122502189	122502389	-	1	NA	NA	NA	-64	NR_027838	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.180000	0.796020	
mm_27129.1	chr3	32365050	32365250	-	1	NA	NA	NA	-339	NR_027966	67576	Mm.435324	NR_027966		4930429B21Rik	-	RIKEN cDNA 4930429B21 gene	ncRNA	0.020000	0.507463	
mm_38335.1	chr4	137598466	137598666	-	1	NA	NA	NA	4377	NM_130879	170707	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	0.005000	0.472637	-33(CCATATAAAAAC,-,0.00)
mm_127111.1	chr15	97908322	97908522	+	1	NA	NA	NA	-126	NM_009504	22337	Mm.245084	NM_009504	ENSMUSG00000022479	Vdr	Nr1i1	vitamin D receptor	protein-coding	0.050000	0.641791	
mm_34956.1	chr4	155993163	155993363	+	1	NA	NA	NA	-74	NM_001302468	20318	Mm.293517	NM_011341	ENSMUSG00000029076	Sdf4	Cab45	stromal cell derived factor 4	protein-coding	0.105000	0.631841	
mm_26333.1	chr3	142546338	142546538	+	1	NA	NA	NA	-13614	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.000000	0.353234	-94(GGATTTAAAAGG,-,0.00)
mm_141423.1	chr17	29436941	29437141	-	1	NA	NA	NA	-54004	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.025000	0.611940	
mm_77768.1	chr9	3005031	3005231	+	1	NA	NA	NA	33612	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.015000	0.343284	
mm_45324.1	chr5	65485993	65486193	-	1	NA	NA	NA	6742	NM_133697	68552	Mm.10709	NM_133697	ENSMUSG00000037822	Smim14	1110003E01Rik|1700127H04Rik|5430439C17Rik|MAd4	small integral membrane protein 14	protein-coding	0.020000	0.422886	
mm_17317.1	chr2	26445101	26445301	-	1	NA	NA	NA	15	NM_153125	227648	Mm.206371	NM_153125	ENSMUSG00000026924	Sec16a	AU024582|C230052J16Rik	SEC16 homolog A, endoplasmic reticulum export factor	protein-coding	0.110000	0.671642	
mm_104887.1	chr11	99559409	99559609	-	1	NA	NA	NA	-2656	NM_025720	66708	Mm.46389	NM_025720	ENSMUSG00000069721	Krtap3-2	2310020D06Rik|4733401L16Rik|KAP3.2|KRTAP3.2	keratin associated protein 3-2	protein-coding	0.030000	0.527363	-34(AGGTATAAAAGG,-,0.00)
mm_138484.1	chr17	35195781	35195981	+	1	NA	NA	NA	909	NR_105939	102465588		NR_105939	ENSMUSG00000098291	Mir6973a	Gm27967|mmu-mir-6973a	microRNA 6973a	ncRNA	0.120000	0.721393	
mm_27023.1	chr3	26059335	26059535	-	1	NA	NA	NA	93872	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.328358	
mm_105699.1	chr11	108240938	108241138	-	1	NA	NA	NA	102850	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.040000	0.557214	
mm_77659.1	chr8	124651663	124651863	-	1	NA	NA	NA	11606	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding	0.045000	0.552239	-32(AGATTTAAAAGG,-,0.00)
mm_87045.1	chr10	28791573	28791773	+	1	NA	NA	NA	123313	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.000000	0.398010	-74(GCTCATATACCC,+,0.00)
mm_115527.1	chr13	5864257	5864457	-	1	NA	NA	NA	2868	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.010000	0.467662	
mm_165091.1	chr19	53185645	53185845	+	1	NA	NA	NA	41748	NM_013758	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.025000	0.542289	
mm_82358.1	chr9	14499258	14499458	-	1	NA	NA	NA	1124	NM_173433	244694	Mm.240457	NM_173433	ENSMUSG00000053914	Kdm4d	4932416A15|Jmjd2d	lysine (K)-specific demethylase 4D	protein-coding	0.000000	0.407960	
mm_165060.1	chr19	42147369	42147569	+	1	NA	NA	NA	80	NM_183195	277010	Mm.206250	NM_183195	ENSMUSG00000044345	Marveld1	AI504298|Mrvldc1	MARVEL (membrane-associating) domain containing 1	protein-coding	0.070000	0.681592	
mm_53627.1	chr6	140491022	140491222	+	1	NA	NA	NA	67023	NM_144920	109135	Mm.247670	NM_144920	ENSMUSG00000030231	Plekha5	2810431N21Rik|AI428202|AK129423|AMH-Cre|Ayu21-9|Gt(pU21)9Imeg|Pepp2|Tg(AMH-cre)1Flor	pleckstrin homology domain containing, family A member 5	protein-coding	0.025000	0.527363	
mm_150973.1	chr19	46501570	46501770	+	1	NA	NA	NA	22	NM_053100	93679	Mm.392177	NM_053100	ENSMUSG00000025034	Trim8	AA408830|BB006755|GERP|Rnf27	tripartite motif-containing 8	protein-coding	0.025000	0.572139	
mm_147927.1	chr18	65939001	65939201	-	1	NA	NA	NA	-12	NM_013833	19434	Mm.431047	NM_013833	ENSMUSG00000024518	Rax	7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1	retina and anterior neural fold homeobox	protein-coding	0.035000	0.626866	-64(CCCTCTATAGGG,-,0.00)
mm_58688.1	chr7	12835852	12836052	+	1	NA	NA	NA	1142	NM_022981	65020	Mm.292297	NM_022981	ENSMUSG00000058638	Zfp110	2900024E01Rik|N28112|NRIF|Nrif1	zinc finger protein 110	protein-coding	0.000000	0.333333	
mm_125202.1	chr15	32985493	32985693	+	1	NA	NA	NA	64870	NM_008304	15529	Mm.234266	NM_008304	ENSMUSG00000022261	Sdc2	4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2	syndecan 2	protein-coding	0.010000	0.522388	
mm_167318.1	chr8	66386326	66386526	+	1	NA	NA	NA	125	NM_001166375	72925	Mm.380457	NM_175188	ENSMUSG00000036469	March1	2900024D24Rik|BB085186	membrane-associated ring finger (C3HC4) 1	protein-coding	0.005000	0.432836	
mm_24025.1	chr3	87535557	87535757	+	1	NA	NA	NA	10079	NM_012051	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.040000	0.597015	
mm_100485.1	chr11	120252954	120253154	+	1	NA	NA	NA	20107	NM_198423	268515	Mm.309498	NM_198423	ENSMUSG00000039741	Bahcc1	B930044J06|BC060615	BAH domain and coiled-coil containing 1	protein-coding	0.015000	0.587065	-41(CCCTTTAAATGC,+,0.00),-41(CCCTTTAAATGC,-,0.00)
mm_95484.1	chr11	51289890	51290090	+	1	NA	NA	NA	70	NM_153393	237759	Mm.154093	NM_153393	ENSMUSG00000063564	Col23a1	2810458L13Rik|AI429655	collagen, type XXIII, alpha 1	protein-coding	0.115000	0.756219	-36(CCTTTTCTGGCG,+,0.00)
mm_5450.1	chr1	36244183	36244383	-	1	NA	NA	NA	19	NM_198899	320011	Mm.261022	NM_198899	ENSMUSG00000037470	Uggt1	0910001L17Rik|A930007H10Rik|AA589501|AI414429|AI448372|C820010P03Rik|GT|UGT1|Ugcgl1	UDP-glucose glycoprotein glucosyltransferase 1	protein-coding	0.100000	0.651741	
mm_71270.1	chr8	40919174	40919374	+	1	NA	NA	NA	-6959	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.000000	0.253731	
mm_138220.1	chr17	34315814	34316014	+	1	NA	NA	NA	-9761	NM_001033978	381091	Mm.139204	NM_001033978	ENSMUSG00000067341	H2-Eb2	A130038H09Rik|H-2Eb2|Ia-5|Ia5|Iebeta2	histocompatibility 2, class II antigen E beta2	protein-coding	0.005000	0.552239	
mm_33970.1	chr4	137611851	137612051	+	1	NA	NA	NA	17762	NM_130879	170707	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	0.010000	0.407960	26(CCTTTTAAAGTT,+,0.00)
mm_55390.1	chr6	59426212	59426412	-	1	NA	NA	NA	-22	NM_183183	243385	Mm.138080	NM_183183	ENSMUSG00000045441	Gprin3	C030038J10Rik|C730021L23	GPRIN family member 3	protein-coding	0.055000	0.636816	
mm_114593.1	chr13	75763709	75763909	+	1	NA	NA	NA	56325	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.010000	0.502488	
mm_93325.1	chr10	99241830	99242030	-	1	NA	NA	NA	-21301	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.020000	0.467662	14(GCTCTTATAGCA,+,0.00),86(TGCTTTTAAAAG,-,0.00),87(GCTTTTAAAAGC,+,0.00),87(GCTTTTAAAAGC,-,0.00),88(CTTTTAAAAGCC,+,0.00)
mm_150266.1	chr19	34217349	34217549	+	1	NA	NA	NA	25179	NM_029682	76630	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.010000	0.407960	
mm_8731.1	chr1	160133603	160133803	-	1	NA	NA	NA	19872	NM_177839	329278	Mm.90140	NM_177839	ENSMUSG00000026725	Tnn	Tnw|tenascin-W	tenascin N	protein-coding	0.005000	0.442786	
mm_62268.1	chr7	99535369	99535569	+	1	NA	NA	NA	-17	NM_178220	109689	Mm.260193	NM_177231	ENSMUSG00000018909	Arrb1	1200006I17Rik|AW208571|G430100A01Rik	arrestin, beta 1	protein-coding	0.125000	0.701493	
mm_118321.1	chr13	113600645	113600845	-	1	NA	NA	NA	17819	NM_130796	170625	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.025000	0.552239	
mm_13980.1	chr2	121457364	121457564	+	1	NA	NA	NA	376	NM_026318	67693	Mm.330525	NM_026318	ENSMUSG00000027245	Hypk	2310003F16Rik|HSPC136	huntingtin interacting protein K	protein-coding	0.035000	0.507463	
mm_22061.1	chr2	168601663	168601863	-	1	NA	NA	NA	-106	NM_001291173	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.090000	0.621891	-29(GCCTATAAACAC,+,0.00)
mm_97554.1	chr11	78929740	78929940	+	1	NA	NA	NA	4549	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.015000	0.512438	
mm_77799.1	chr9	3031789	3031989	+	1	NA	NA	NA	6854	NR_039546	100628572		NR_039546	ENSMUSG00000106183	Mir101c	mir-101c|mmu-mir-101c	microRNA 101c	ncRNA	0.025000	0.358209	
mm_46002.1	chr5	90694467	90694667	-	1	NA	NA	NA	-54040	NM_001310656	73246	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.015000	0.462687	
mm_60804.1	chr7	45628874	45629074	+	1	NA	NA	NA	1437	NM_028544	69903	Mm.181396	NM_028544	ENSMUSG00000044562	Rasip1	1110025D03Rik|2610025P08Rik|AI853551|Rain	Ras interacting protein 1	protein-coding	0.155000	0.771144	
mm_118887.1	chr14	26579474	26579674	+	1	NA	NA	NA	24	NM_145969	211922	Mm.260512	NM_145969	ENSMUSG00000040818	Dennd6a	Fam116a	DENN/MADD domain containing 6A	protein-coding	0.145000	0.771144	
mm_162513.1	chr1	155096638	155096838	-	1	NA	NA	NA	2898	NM_010500	15939	Mm.12246	NM_010500	ENSMUSG00000056708	Ier5	-	immediate early response 5	protein-coding	0.005000	0.373134	
mm_118020.1	chr13	100833092	100833292	-	1	NA	NA	NA	235	NM_022885	69048	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.150000	0.766169	
mm_53926.1	chr6	4717051	4717251	-	1	NA	NA	NA	30053	NM_001130188	20392	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	0.020000	0.462687	
mm_51182.1	chr6	70824620	70824820	+	1	NA	NA	NA	-19795	NM_010121	13666	Mm.247167	NM_010121	ENSMUSG00000031668	Eif2ak3	Pek|Perk	eukaryotic translation initiation factor 2 alpha kinase 3	protein-coding	0.040000	0.557214	
mm_51110.1	chr6	67555487	67555687	+	1	NA	NA	NA	10112	NR_003100	75070	Mm.463364	NR_003100		4930515G16Rik	-	myc induced nuclear antigen pseudogene	pseudo	0.000000	0.507463	
mm_89619.1	chr10	96181573	96181773	+	1	NA	NA	NA	-44534	NR_110448	74881	Mm.410819	NR_110448		4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.015000	0.502488	
mm_68241.1	chr7	105399874	105400074	-	1	NA	NA	NA	80	NM_001242364	74349	Mm.30254	NM_199009	ENSMUSG00000044465	Fam160a2	4632419K20Rik|6530415H11Rik|FHIP	family with sequence similarity 160, member A2	protein-coding	0.155000	0.771144	
mm_17134.1	chr2	24974931	24975131	-	1	NA	NA	NA	67	NM_001031808	107733	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	0.075000	0.626866	
mm_113619.1	chr13	41605785	41605985	+	1	NA	NA	NA	-331	NM_001163572	621976	Mm.259830	NM_001163572	ENSMUSG00000087370	Tmem170b	EG621976	transmembrane protein 170B	protein-coding	0.185000	0.810945	
mm_134419.1	chr16	17838096	17838296	-	1	NA	NA	NA	-10	NM_030558	80733	Mm.390864	NM_030558	ENSMUSG00000090236	Car15	AI315043|Ca15|Cals2	carbonic anhydrase 15	protein-coding	0.005000	0.552239	
mm_128033.1	chr15	25363720	25363920	-	1	NA	NA	NA	49944	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.020000	0.457711	-48(CCTTAAAAACCC,+,0.00)
mm_169939.1	chr16	62716859	62717059	+	1	NA	NA	NA	69757	NM_178925	106338	Mm.26321	NM_178925	ENSMUSG00000050312	Nsun3	6720484A09Rik|AU022521	NOL1/NOP2/Sun domain family member 3	protein-coding	0.075000	0.502488	
mm_47993.1	chr5	135962202	135962402	-	1	NA	NA	NA	12174	NM_001160366	109267	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0.035000	0.522388	
mm_5854.1	chr1	53342130	53342330	-	1	NA	NA	NA	10522	NM_001290984	70396	Mm.285783	NM_133728	ENSMUSG00000026095	Asnsd1	2210409M21Rik	asparagine synthetase domain containing 1	protein-coding	0.010000	0.472637	3(TCCCTTATAAGC,-,0.00),5(CCTTATAAGCAA,+,0.00)
mm_106215.1	chr11	116852342	116852542	-	1	NA	NA	NA	652	NM_011358	20382	Mm.21841	NM_011358	ENSMUSG00000034120	Srsf2	D11Wsu175e|MRF-1|Pr264|SC35|Sfrs10|Sfrs2	serine/arginine-rich splicing factor 2	protein-coding	0.125000	0.741294	
mm_129428.1	chr15	78481595	78481795	-	1	NA	NA	NA	-13061	NM_027902	71753	Mm.34056	NM_027902	ENSMUSG00000016942	Tmprss6	1300008A22Rik	transmembrane serine protease 6	protein-coding	0.025000	0.631841	
mm_159254.1	chr2	152604117	152604317	+	1	NA	NA	NA	-110	NM_001037247	266620	Mm.330669	NM_001037247	ENSMUSG00000044863	Defb36	BD-36|Defb123|mBD-36	defensin beta 36	protein-coding	0.015000	0.497512	
mm_77365.1	chr8	119810012	119810212	-	1	NA	NA	NA	30467	NM_028071	72042	Mm.393405	NM_028071	ENSMUSG00000031827	Cotl1	1810074P22Rik|2010004C08Rik|Clp	coactosin-like 1 (Dictyostelium)	protein-coding	0.025000	0.601990	
mm_84994.1	chr9	86695680	86695880	-	1	NA	NA	NA	134	NM_008615	17436	Mm.148155	NM_008615	ENSMUSG00000032418	Me1	D9Ertd267e|Mdh-1|Mod-1|Mod1	malic enzyme 1, NADP(+)-dependent, cytosolic	protein-coding	0.160000	0.810945	
mm_53344.1	chr6	129284607	129284807	+	1	NA	NA	NA	-9338	NM_001033122	12515	Mm.74745	NM_001033122	ENSMUSG00000030156	Cd69	5830438K24Rik|AI452015|AIM|VEA	CD69 antigen	protein-coding	0.015000	0.388060	
mm_3324.1	chr1	137920794	137920994	+	1	NA	NA	NA	-45561	NR_029795	735252		NR_029795	ENSMUSG00000065565	Mir181a-1	Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213	microRNA 181a-1	ncRNA	0.000000	0.278607	
mm_71554.1	chr8	48347439	48347639	+	1	NA	NA	NA	237526	NM_001161515	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	0.015000	0.388060	
mm_124081.1	chr14	78650443	78650643	-	1	NA	NA	NA	-6092	NR_104044	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.030000	0.547264	
mm_30649.1	chr4	8840278	8840478	+	1	NA	NA	NA	149972	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.005000	0.452736	
mm_11288.1	chr2	30066710	30066910	+	1	NA	NA	NA	336	NM_001204875	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.135000	0.731343	
mm_31703.1	chr4	62559732	62559932	+	1	NA	NA	NA	-15	NM_019492	50780	Mm.286753	NM_019492	ENSMUSG00000059810	Rgs3	4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S	regulator of G-protein signaling 3	protein-coding	0.010000	0.492537	
mm_147194.1	chr18	37644097	37644297	-	1	NA	NA	NA	7	NM_175770	24074	Mm.236009	NM_175770	ENSMUSG00000051316	Taf7	55kDa|AI607308|BB007175|TAFII55|Taf2f	TATA-box binding protein associated factor 7	protein-coding	0.120000	0.606965	
mm_53693.1	chr6	142751497	142751697	+	1	NA	NA	NA	-5089	NM_009908	12764	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.025000	0.492537	
mm_88480.1	chr10	77616344	77616544	+	1	NA	NA	NA	2735	NR_125903	20610	Mm.24433	NM_019929	ENSMUSG00000020265	Sumo3	2810014B19Rik|D10Ertd345e|SMT3A|SUMO-3|Smt3h1	small ubiquitin-like modifier 3	protein-coding	0.010000	0.472637	
mm_20225.1	chr2	125782688	125782888	-	1	NA	NA	NA	82	NM_177608	70354	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.130000	0.751244	
mm_114611.1	chr13	75844998	75845198	+	1	NA	NA	NA	5212	NM_053108	93692	Mm.25844	NM_053108	ENSMUSG00000021591	Glrx	C86710|D13Wsu156e|Glrx1|Grx1|TTase	glutaredoxin	protein-coding	0.000000	0.388060	
mm_2660.1	chr1	125677195	125677395	+	1	NA	NA	NA	299	NM_027677	71111	Mm.32727	NM_027677	ENSMUSG00000026343	Gpr39	4933415E13Rik	G protein-coupled receptor 39	protein-coding	0.030000	0.562189	
mm_130239.1	chr15	96576345	96576545	-	1	NA	NA	NA	65517	NM_134086	105727	Mm.103568	NM_134086	ENSMUSG00000023169	Slc38a1	AA408026|AA409865|AL022800|AU015942|NAT2	solute carrier family 38, member 1	protein-coding	0.040000	0.502488	
mm_157690.1	chrX	60403733	60403933	-	1	NA	NA	NA	148	NM_001001798	320940	Mm.490394	NM_001001798	ENSMUSG00000062949	Atp11c	A330005H02Rik|AI315324|Ig	ATPase, class VI, type 11C	protein-coding	0.130000	0.726368	
mm_81800.1	chr9	116145355	116145555	+	1	NA	NA	NA	29908	NM_029575	21813	Mm.172346	NM_009371	ENSMUSG00000032440	Tgfbr2	1110020H15Rik|AU042018|DNIIR|RIIDN|TBR-II|TbetaR-II|TbetaRII	transforming growth factor, beta receptor II	protein-coding	0.030000	0.477612	
mm_78749.1	chr9	42142027	42142227	+	1	NA	NA	NA	-17838	NM_011436	20660	Mm.121920	NM_011436	ENSMUSG00000049313	Sorl1	2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA	sortilin-related receptor, LDLR class A repeats-containing	protein-coding	0.005000	0.477612	
mm_101656.1	chr11	36677586	36677786	-	1	NA	NA	NA	266555	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.005000	0.338308	-34(GGACTTAAAAGG,-,0.00)
mm_116867.1	chr13	55018003	55018203	-	1	NA	NA	NA	2716	NM_001206390	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.030000	0.502488	
mm_110455.1	chr12	51691610	51691810	-	1	NA	NA	NA	204	NM_001172098	94186	Mm.65979	NM_052973	ENSMUSG00000020954	Strn3	Gs2na|SG2NA	striatin, calmodulin binding protein 3	protein-coding	0.125000	0.815920	
mm_109312.1	chr12	109560874	109561074	+	1	NA	NA	NA	-2718	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.040000	0.432836	
mm_136344.1	chr16	92603205	92603405	-	1	NA	NA	NA	94024	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.020000	0.427861	
mm_77651.1	chr8	124564087	124564287	-	1	NA	NA	NA	5520	NM_007428	11606	Mm.301626	NM_007428	ENSMUSG00000031980	Agt	AI265500|AngI|AngII|Aogen|Serpina8	angiotensinogen (serpin peptidase inhibitor, clade A, member 8)	protein-coding	0.040000	0.601990	
mm_139023.1	chr17	46124200	46124400	+	1	NA	NA	NA	13296	NM_026768	68565	Mm.287443	NM_026768	ENSMUSG00000023967	Mrps18a	1110004O20Rik|C79712	mitochondrial ribosomal protein S18A	protein-coding	0.035000	0.626866	
mm_27029.1	chr3	26153549	26153749	-	1	NA	NA	NA	-342	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.035000	0.412935	
mm_156709.1	chrX	159627337	159627537	+	1	NA	NA	NA	165	NM_001135727	58194	Mm.286495	NM_021389	ENSMUSG00000040990	Sh3kbp1	1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta	SH3-domain kinase binding protein 1	protein-coding	0.055000	0.547264	
mm_154085.1	chr19	56746637	56746837	-	1	NA	NA	NA	24365	NM_007419	11554	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.035000	0.562189	
mm_66906.1	chr7	59984694	59984894	-	1	NA	NA	NA	-5938	NR_028529	100217429		NR_028529		Snord64	MBII-13	small nucleolar RNA, C/D box 64	snoRNA	0.000000	0.308458	
mm_125720.1	chr15	73090317	73090517	+	1	NA	NA	NA	5	NM_053068	93696	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0.145000	0.711443	
mm_134931.1	chr16	31081257	31081457	-	1	NA	NA	NA	75	NM_198626	268880	Mm.286693	NM_198626	ENSMUSG00000047434	Xxylt1	AI480653	xyloside xylosyltransferase 1	protein-coding	0.135000	0.781095	
mm_20000.1	chr2	118834077	118834277	-	1	NA	NA	NA	20174	NM_026412	51944	Mm.252695	NM_026412	ENSMUSG00000027331	Knstrn	1700025D04Rik|C15orf23|D2Ertd750e|SKAP|Traf4af1	kinetochore-localized astrin/SPAG5 binding	protein-coding	0.020000	0.502488	
mm_130936.1	chr15	103215027	103215227	-	1	NA	NA	NA	225	NM_007626	12419	Mm.262059	NM_007626	ENSMUSG00000009575	Cbx5	2610029O15Rik|C75991|HP1|Hp1a|Hp1alpha	chromobox 5	protein-coding	0.010000	0.412935	
mm_49134.1	chr6	8948822	8949022	+	1	NA	NA	NA	-1097	NM_008751	18231	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.060000	0.582090	
mm_134657.1	chr16	22069159	22069359	-	1	NA	NA	NA	59775	NR_027488	75826	Mm.297431	NM_029457	ENSMUSG00000022855	Senp2	2310007L05Rik|4930538C18Rik|AI646780|AW554757|Smt3ip2|SuPr-1|mKIAA1331	SUMO/sentrin specific peptidase 2	protein-coding	0.000000	0.422886	
mm_154219.1	chr19	59350613	59350813	-	1	NA	NA	NA	-4933	NM_001033222	107368	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0.010000	0.467662	63(TCCTTTAAAAAG,-,0.00),64(CCTTTAAAAAGA,+,0.00),65(CTTTAAAAAGAC,+,0.00)
mm_138734.1	chr17	36963730	36963930	+	1	NA	NA	NA	5238	NM_029602	76416	Mm.26684	NM_029602	ENSMUSG00000036214	Znrd1as	1700022C21Rik|AI746295|Znrd1-as	zinc ribbon domain containing 1, antisense	protein-coding	0.005000	0.457711	
mm_91332.1	chr10	25298195	25298395	-	1	NA	NA	NA	868	NM_018747	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.005000	0.452736	56(GTTTTTAAAAGG,-,0.00)
mm_151697.1	chr19	4439278	4439478	-	1	NA	NA	NA	55	NR_045990	319314	Mm.393810	NR_045989	ENSMUSG00000087132	A930001C03Rik	-	RIKEN cDNA A930001C03 gene	ncRNA	0.130000	0.756219	
mm_152197.1	chr19	7483160	7483360	-	1	NA	NA	NA	31	NM_001271486	20168	Mm.246990	NM_053076	ENSMUSG00000024758	Rtn3	RTN3-A1	reticulon 3	protein-coding	0.130000	0.681592	
mm_124593.1	chr15	3274778	3274978	+	1	NA	NA	NA	3901	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.005000	0.358209	7(TCTTTTAAGGCT,+,0.00),59(GCATATAAAAGG,-,0.00)
mm_24957.1	chr3	96670222	96670422	+	1	NA	NA	NA	191	NM_001081139	213121	Mm.39732	NM_001081139	ENSMUSG00000038354	Ankrd35	4732436F15Rik	ankyrin repeat domain 35	protein-coding	0.075000	0.641791	
mm_122105.1	chr14	30920646	30920846	-	1	NA	NA	NA	2841	NM_008407	16426	Mm.4517	NM_008407	ENSMUSG00000006522	Itih3	AW108094|ITI-HC3|Intin3|Itih-3	inter-alpha trypsin inhibitor, heavy chain 3	protein-coding	0.015000	0.487562	
mm_89713.1	chr10	98781152	98781352	+	1	NA	NA	NA	-133900	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.025000	0.412935	-99(CCTTAAATAGGT,+,0.00),-32(GCTTATAAAGAA,+,0.00)
mm_159422.1	chr3	108186206	108186406	+	1	NA	NA	NA	17	NM_001287093	229715	Mm.275752	NM_146137	ENSMUSG00000050947	Amigo1	Amigo|ali2	adhesion molecule with Ig like domain 1	protein-coding	0.205000	0.825871	
mm_105741.1	chr11	109362469	109362669	-	1	NA	NA	NA	-225	NM_010303	14674	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0.110000	0.686567	
mm_33266.1	chr4	127262216	127262416	+	1	NA	NA	NA	18532	NM_030252	80284	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	0.015000	0.507463	
mm_137687.1	chr17	28858469	28858669	+	1	NA	NA	NA	158	NM_001034885	433091	Mm.328925	NM_001034885	ENSMUSG00000043286	Pnpla1	-	patatin-like phospholipase domain containing 1	protein-coding	0.035000	0.606965	
mm_87283.1	chr10	42184273	42184473	+	1	NA	NA	NA	92369	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.025000	0.502488	
mm_105849.1	chr11	113709918	113710118	-	1	NA	NA	NA	-1	NM_029794	52670	Mm.229207	NM_026682	ENSMUSG00000018727	Cpsf4l	0610010C04Rik|1500000C01Rik|D11Ertd636e	cleavage and polyadenylation specific factor 4-like	protein-coding	0.015000	0.601990	-33(GTCTAGAAAAGA,-,0.00)
mm_102019.1	chr11	51637874	51638074	-	1	NA	NA	NA	-2078	NM_025346	66089	Mm.288183	NM_025346	ENSMUSG00000001054	Rmnd5b	0610039K22Rik|Gid2	required for meiotic nuclear division 5 homolog B	protein-coding	0.015000	0.487562	
mm_154636.1	chrX	7763858	7764058	+	1	NA	NA	NA	15	NM_001105197	209446	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	0.040000	0.587065	
mm_79420.1	chr9	55326848	55327048	+	1	NA	NA	NA	-1	NM_172923	244886	Mm.24361	NM_172923	ENSMUSG00000032313	Tmem266	9630029F15|AI118078|HVRP1	transmembrane protein 266	protein-coding	0.135000	0.800995	
mm_6555.1	chr1	75139298	75139498	-	1	NA	NA	NA	2970	NM_026977	69171	Mm.28193	NM_026977	ENSMUSG00000033159	Cnppd1	1810031K17Rik|AU043960	cyclin Pas1/PHO80 domain containing 1	protein-coding	0.015000	0.522388	
mm_102470.1	chr11	60021125	60021325	-	1	NA	NA	NA	15780	NM_008819	18618	Mm.2731	NM_008819	ENSMUSG00000000301	Pemt	PEAMT|PEMT2|PLMT|Pempt|Pempt2	phosphatidylethanolamine N-methyltransferase	protein-coding	0.015000	0.517413	
mm_11115.1	chr2	28193200	28193400	+	1	NA	NA	NA	207	NM_001038614	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.125000	0.751244	
mm_71506.1	chr8	46834047	46834247	+	1	NA	NA	NA	94402	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.000000	0.432836	
mm_26056.1	chr3	135825694	135825894	+	1	NA	NA	NA	4	NM_001135150	67547	Mm.30239	NM_026228	ENSMUSG00000053897	Slc39a8	4933419D20Rik|AA986696|BIGM103|ZIP-8|Zip8	solute carrier family 39 (metal ion transporter), member 8	protein-coding	0.020000	0.512438	
mm_74770.1	chr8	21232174	21232374	-	1	NA	NA	NA	-17488	NM_001177487	100041787	Mm.437206	NM_001177487	ENSMUSG00000074441	Gm15292	ENSMUSG00000074441|OTTMUSG00000019784	predicted gene 15292	protein-coding	0.000000	0.532338	-36(CCCTATAAATGC,+,0.00),-36(CCCTATAAATGC,-,0.00)
mm_94743.1	chr11	21095718	21095918	+	1	NA	NA	NA	4494	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.005000	0.328358	
mm_65882.1	chr7	29726899	29727099	-	1	NA	NA	NA	16	NM_029714	76718	Mm.69030	NM_029714	ENSMUSG00000049123	Catsperg2	1700067C01Rik|CATSPERG	catsper channel auxiliary subunit gamma 2	protein-coding	0.055000	0.577114	
mm_87678.1	chr10	59221804	59222004	+	1	NA	NA	NA	-18	NM_172939	268301	Mm.3036	NM_172939	ENSMUSG00000098188	Sowahc	4921515A04Rik|9430099J10Rik|Ankrd57|C820004L04Rik	sosondowah ankyrin repeat domain family member C	protein-coding	0.110000	0.696517	
mm_126215.1	chr15	78908348	78908548	+	1	NA	NA	NA	-5471	NM_020271	57028	Mm.263169	NM_020271	ENSMUSG00000022436	Pdxp	1600027H05Rik|AB041662|PLPP	pyridoxal (pyridoxine, vitamin B6) phosphatase	protein-coding	0.015000	0.547264	
mm_67084.1	chr7	68278629	68278829	-	1	NA	NA	NA	-2135	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.010000	0.532338	
mm_13756.1	chr2	118126631	118126831	+	1	NA	NA	NA	14855	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.020000	0.323383	
mm_54517.1	chr6	35520872	35521072	-	1	NA	NA	NA	18916	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.015000	0.452736	
mm_35149.1	chr4	11965626	11965826	-	1	NA	NA	NA	-13	NM_001098231	381511	Mm.331489	NM_001033453	ENSMUSG00000049225	Pdp1	Gm1024|Ppm2c	pyruvate dehyrogenase phosphatase catalytic subunit 1	protein-coding	0.075000	0.646766	
mm_66659.1	chr7	45715096	45715296	-	1	NA	NA	NA	11	NM_020011	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.075000	0.691542	
mm_133408.1	chr16	84852515	84852715	+	1	NA	NA	NA	-16990	NM_001302213	11957	Mm.353	NM_016755	ENSMUSG00000022890	Atp5j	CF6	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F	protein-coding	0.025000	0.363184	
mm_66799.1	chr7	47133304	47133504	-	1	NA	NA	NA	280	NM_013643	19259	Mm.4654	NM_013643	ENSMUSG00000030854	Ptpn5	Step	protein tyrosine phosphatase, non-receptor type 5	protein-coding	0.050000	0.507463	
mm_5546.1	chr1	38627341	38627541	-	1	NA	NA	NA	-197	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.180000	0.840796	
mm_2490.1	chr1	105990695	105990895	+	1	NA	NA	NA	389	NM_001122675	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.160000	0.751244	
mm_4505.1	chr1	173735114	173735314	+	1	NA	NA	NA	6595	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.020000	0.532338	
mm_27790.1	chr3	75269979	75270179	-	1	NA	NA	NA	-1	NM_026460	67931	Mm.259446	NM_026460	ENSMUSG00000034139	Serpini2	Spi14	serine (or cysteine) peptidase inhibitor, clade I, member 2	protein-coding	0.005000	0.298507	
mm_96883.1	chr11	70432481	70432681	+	1	NA	NA	NA	1	NM_001271358	216869	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872	arrestin, beta 2	protein-coding	0.130000	0.761194	
mm_74097.1	chr8	122589595	122589795	+	1	NA	NA	NA	-12788	NM_009698	11821	Mm.1786	NM_009698	ENSMUSG00000006589	Aprt	C85684	adenine phosphoribosyl transferase	protein-coding	0.055000	0.557214	
mm_109843.1	chr12	4592418	4592618	-	1	NA	NA	NA	-490	NM_001198969	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.000000	0.477612	
mm_101684.1	chr11	40694744	40694944	-	1	NA	NA	NA	359	NM_001199274	108645	Mm.293771	NM_134017	ENSMUSG00000042032	Mat2b	1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR	methionine adenosyltransferase II, beta	protein-coding	0.090000	0.577114	
mm_76208.1	chr8	83442355	83442555	-	1	NA	NA	NA	207	NM_001285992	56367	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	0.125000	0.756219	
mm_21345.1	chr2	157111592	157111792	-	1	NA	NA	NA	23530	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.005000	0.402985	
mm_35495.1	chr4	41045315	41045515	-	1	NA	NA	NA	2721	NM_007473	11832	Mm.8728	NM_007473	ENSMUSG00000028427	Aqp7	AQP7L|AQPap	aquaporin 7	protein-coding	0.010000	0.527363	
mm_59794.1	chr7	29000730	29000930	+	1	NA	NA	NA	17976	NM_008279	26411	Mm.148278	NM_008279	ENSMUSG00000037337	Map4k1	Hpk1|mHPK1	mitogen-activated protein kinase kinase kinase kinase 1	protein-coding	0.040000	0.577114	
mm_114806.1	chr13	91461035	91461235	+	1	NA	NA	NA	38	NM_024186	66970	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.085000	0.686567	
mm_86587.1	chr10	13090734	13090934	+	1	NA	NA	NA	-11	NR_131912	338438		NR_131912		Hymai	-	hydatidiform mole associated and imprinted transcript	ncRNA	0.105000	0.686567	
mm_74970.1	chr8	27042941	27043141	-	1	NA	NA	NA	486	NM_054057	114863	Mm.277501	NM_054057	ENSMUSG00000031485	Prosc	1700024N20Rik|2200002F22Rik	proline synthetase co-transcribed	protein-coding	0.105000	0.616915	
mm_114457.1	chr13	67173080	67173280	+	1	NA	NA	NA	-2	NM_001013769	380855	Mm.284988	NM_001013769	ENSMUSG00000058900	Rsl1	rslcan-9	regulator of sex limited protein 1	protein-coding	0.040000	0.537313	
mm_68549.1	chr7	114275972	114276172	-	1	NA	NA	NA	44	NM_011965	26440	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.100000	0.636816	
mm_127696.1	chr15	102990483	102990683	+	1	NA	NA	NA	44	NM_010466	15426	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.105000	0.701493	
mm_76189.1	chr8	82402665	82402865	-	1	NA	NA	NA	-179	NM_008357	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.035000	0.562189	
mm_144223.1	chr18	9877073	9877273	+	1	NA	NA	NA	-81007	NM_153552	225160	Mm.219648	NM_153552	ENSMUSG00000024287	Thoc1	3110002N20Rik|AW107452|NMP-84	THO complex 1	protein-coding	0.005000	0.373134	
mm_12279.1	chr2	69004744	69004944	+	1	NA	NA	NA	-130956	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.000000	0.333333	81(CTTCTTAAAAGG,-,0.00)
mm_124677.1	chr15	6428583	6428783	+	1	NA	NA	NA	-16650	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.005000	0.368159	
mm_76084.1	chr8	79399326	79399526	-	1	NA	NA	NA	42	NM_008539	17125	Mm.223717	NM_008539	ENSMUSG00000031681	Smad1	AI528653|Madh1|Madr1|Mlp1|MusMLP	SMAD family member 1	protein-coding	0.135000	0.751244	
mm_78950.1	chr9	45138653	45138853	+	1	NA	NA	NA	-289	NM_001013390	399548	Mm.335112	NM_001013390	ENSMUSG00000046480	Scn4b	Gm1471	sodium channel, type IV, beta	protein-coding	0.110000	0.726368	
mm_131927.1	chr16	23520249	23520449	+	1	NA	NA	NA	241	NM_008555	17174	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0.020000	0.597015	
mm_48287.1	chr5	138172301	138172501	-	1	NA	NA	NA	380	NM_021392	11781	Mm.113205	NM_021392	ENSMUSG00000019518	Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding	0.040000	0.582090	
mm_13237.1	chr2	98662352	98662552	+	1	NA	NA	NA	1194795	NM_178725	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.020000	0.348259	
mm_52073.1	chr6	97827138	97827338	+	1	NA	NA	NA	20180	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.015000	0.482587	24(CCTCATTAAAGG,-,0.00)
mm_6671.1	chr1	80340438	80340638	-	1	NA	NA	NA	152	NM_001313728	26554	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.185000	0.835821	
mm_64703.1	chr7	4547415	4547615	-	1	NA	NA	NA	-948	NM_016908	53420	Mm.358663	NM_016908	ENSMUSG00000004961	Syt5	SytV	synaptotagmin V	protein-coding	0.115000	0.651741	
mm_42043.1	chr5	108461132	108461332	+	1	NA	NA	NA	-100	NM_172716	69587	Mm.261218	NM_172716	ENSMUSG00000033623	Pcgf3	2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3	polycomb group ring finger 3	protein-coding	0.080000	0.671642	
mm_68460.1	chr7	110166258	110166458	-	1	NA	NA	NA	44299	NM_009516	22390	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.010000	0.467662	14(GGCTTTAAAAGG,-,0.00),15(GCTTTAAAAGGA,+,0.00)
mm_24392.1	chr3	90265861	90266061	+	1	NA	NA	NA	-553	NM_201407	229541	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0.055000	0.626866	
mm_148377.1	chr19	3205537	3205737	+	1	NA	NA	NA	-7934	NR_045304	70011	Mm.393871	NR_045304	ENSMUSG00000100969	1700030N03Rik	1700087C08Rik	RIKEN cDNA 1700030N03 gene	ncRNA	0.095000	0.666667	
mm_57052.1	chr6	122455783	122455983	-	1	NA	NA	NA	30422	NM_027664	108653	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	0.010000	0.368159	
mm_169857.1	chr16	3345799	3345999	+	1	NA	NA	NA	-246499	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.020000	0.472637	
mm_75060.1	chr8	33664369	33664569	-	1	NA	NA	NA	11231	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.010000	0.383085	
mm_141949.1	chr17	35081098	35081298	-	1	NA	NA	NA	4256	NM_027366	70274	Mm.250491	NM_027366	ENSMUSG00000013766	Ly6g6e	2310011I02Rik|G6e	lymphocyte antigen 6 complex, locus G6E	protein-coding	0.020000	0.552239	
mm_13285.1	chr2	101644314	101644514	+	1	NA	NA	NA	5118	NM_009019	19373	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0.055000	0.527363	
mm_62288.1	chr7	99906347	99906547	+	1	NA	NA	NA	47229	NM_001164258	446101	Mm.440757	NM_001164258	ENSMUSG00000035211	Xrra1	AI449753	X-ray radiation resistance associated 1	protein-coding	0.010000	0.462687	
mm_162601.1	chr1	183154837	183155037	-	1	NA	NA	NA	-7380	NM_001278220	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0.010000	0.507463	
mm_124790.1	chr15	8109271	8109471	+	1	NA	NA	NA	58	NM_133227	170762	Mm.295168	NM_133227	ENSMUSG00000022142	Nup155	D930027M19Rik|mKIAA0791	nucleoporin 155	protein-coding	0.105000	0.582090	43(GTTTCTATAAGG,-,0.00)
mm_168251.1	chr10	82955229	82955429	-	1	NA	NA	NA	-30168	NM_021439	58250	Mm.360747	NM_021439	ENSMUSG00000034612	Chst11	1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s	carbohydrate sulfotransferase 11	protein-coding	0.070000	0.502488	
mm_134020.1	chr16	4880193	4880393	-	1	NA	NA	NA	-442	NM_145359	207740	Mm.268895	NM_145359	ENSMUSG00000039568	Ubald1	1500031H01Rik|BC013706|Fam100a	UBA-like domain containing 1	protein-coding	0.035000	0.467662	
mm_121182.1	chr14	103049191	103049391	+	1	NA	NA	NA	2279	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.025000	0.482587	
mm_74455.1	chr8	4214274	4214474	-	1	NA	NA	NA	2938	NM_207203	73072	Mm.477379	NM_207203	ENSMUSG00000064125	Prr36	-	proline rich 36	protein-coding	0.020000	0.567164	
mm_33839.1	chr4	135752080	135752280	+	1	NA	NA	NA	-7535	NM_001085509	242702	Mm.318639	NM_001085509	ENSMUSG00000037139	Myom3	8430427K15Rik|Gm434	myomesin family, member 3	protein-coding	0.005000	0.477612	
mm_79212.1	chr9	49055502	49055702	+	1	NA	NA	NA	21	NM_012039	26951	Mm.24791	NM_012039	ENSMUSG00000032264	Zw10	6330566F14Rik|MmZw10	zw10 kinetochore protein	protein-coding	0.105000	0.671642	
mm_92839.1	chr10	81499560	81499760	-	1	NA	NA	NA	477	NM_010102	13611	Mm.33065	NM_010102	ENSMUSG00000044199	S1pr4	Edg6|Lpc1|S1p4	sphingosine-1-phosphate receptor 4	protein-coding	0.025000	0.626866	
mm_91781.1	chr10	52343567	52343767	-	1	NA	NA	NA	38457	NM_053187	94221	Mm.390258	NM_053187	ENSMUSG00000019861	Gopc	2210402P09Rik|AI844555|CAL|FIG|GOPC1|PIST	golgi associated PDZ and coiled-coil motif containing	protein-coding	0.020000	0.482587	
mm_163165.1	chr11	86593212	86593412	+	1	NA	NA	NA	-9154	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.447761	
mm_23894.1	chr3	83031522	83031722	+	1	NA	NA	NA	5469	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.045000	0.497512	
mm_115907.1	chr13	23430862	23431062	-	1	NA	NA	NA	55	NR_015492	320842	Mm.487476	NR_015492	ENSMUSG00000085024	C230035I16Rik	-	RIKEN cDNA C230035I16 gene	ncRNA	0.060000	0.527363	-42(CTCTATAAATGA,-,0.00)
mm_37929.1	chr4	132884354	132884554	-	1	NA	NA	NA	4	NM_133887	100226	Mm.28237	NM_133887	ENSMUSG00000028879	Stx12	AI850350|AU041521|Stx13	syntaxin 12	protein-coding	0.125000	0.691542	
mm_23475.1	chr3	60480859	60481059	+	1	NA	NA	NA	8129	NM_001253713	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.383085	
mm_55020.1	chr6	48840984	48841184	-	1	NA	NA	NA	53	NM_001286652	65963	Mm.28385	NM_023056	ENSMUSG00000029810	Tmem176b	1810009M01Rik|Clast1|Lr8	transmembrane protein 176B	protein-coding	0.005000	0.592040	
mm_1936.1	chr1	86128161	86128361	+	1	NA	NA	NA	-16291	NM_008311	15559	Mm.439747	NM_008311	ENSMUSG00000026228	Htr2b	5-HT2B|AJ012488|AV377389	5-hydroxytryptamine (serotonin) receptor 2B	protein-coding	0.015000	0.457711	
mm_65962.1	chr7	30435153	30435353	-	1	NA	NA	NA	10329	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.020000	0.557214	
mm_46703.1	chr5	110230790	110230990	-	1	NA	NA	NA	-114	NM_001253814	71782	Mm.288442	NM_027922	ENSMUSG00000029501	Ankle2	1110001J12Rik|AI661024|D5Ertd585e	ankyrin repeat and LEM domain containing 2	protein-coding	0.110000	0.701493	
mm_107816.1	chr12	65225634	65225834	+	1	NA	NA	NA	217	NM_027614	70948	Mm.219475	NM_027614	ENSMUSG00000035560	Wdr20rt	4921538B03Rik|4930427E19Rik|Wdr20|Wdr20b	WD repeat domain 20, retrogene	protein-coding	0.065000	0.512438	
mm_17020.1	chr2	18998066	18998266	-	1	NA	NA	NA	-45	NM_008845	18718	Mm.313977	NM_008845	ENSMUSG00000026737	Pip4k2a	AW742916|Pip5k2a	phosphatidylinositol-5-phosphate 4-kinase, type II, alpha	protein-coding	0.175000	0.825871	
mm_155601.1	chrX	82948788	82948988	+	1	NA	NA	NA	18	NM_007868	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.015000	0.452736	59(GCCTTTATAGAA,+,0.00)
mm_104639.1	chr11	97523844	97524044	-	1	NA	NA	NA	-23604	NM_001289118	100141474	Mm.482426	NM_001289118	ENSMUSG00000047988	4933428G20Rik	-	RIKEN cDNA 4933428G20 gene	protein-coding	0.000000	0.582090	
mm_7375.1	chr1	106796539	106796739	-	1	NA	NA	NA	86	NM_009190	20479	Mm.18705	NM_009190	ENSMUSG00000009907	Vps4b	8030489C12Rik|Skd1	vacuolar protein sorting 4B	protein-coding	0.085000	0.651741	
mm_36642.1	chr4	94329330	94329530	-	1	NA	NA	NA	227366	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.000000	0.407960	
mm_42254.1	chr5	114003760	114003960	+	1	NA	NA	NA	-24	NM_001286397	13142	Mm.20115	NM_010018	ENSMUSG00000042096	Dao	AI987963|DAAO|DAMOX|Dao-1|Dao1	D-amino acid oxidase	protein-coding	0.010000	0.567164	
mm_40896.1	chr5	75155359	75155559	+	1	NA	NA	NA	-707	NM_001083316	18595	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.020000	0.512438	
mm_167678.1	chr9	78333206	78333406	+	1	NA	NA	NA	5276	NM_205822	382088	Mm.360477	NM_205822	ENSMUSG00000038750	Omt2b	AU018149|C86230|Mosg|OM2b	oocyte maturation, beta	protein-coding	0.005000	0.502488	
mm_72234.1	chr8	74873197	74873397	+	1	NA	NA	NA	123	NM_001294278	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	0.005000	0.482587	
mm_167077.1	chr7	100706650	100706850	+	1	NA	NA	NA	48	NM_178764	319604	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0.080000	0.641791	
mm_2424.1	chr1	95314034	95314234	+	1	NA	NA	NA	506	NM_026321	67698	Mm.272705	NM_026321	ENSMUSG00000051185	Fam174a	2310044D20Rik|Fam174|Naa6|Tmem157	family with sequence similarity 174, member A	protein-coding	0.090000	0.701493	
mm_142783.1	chr17	50156089	50156289	-	1	NA	NA	NA	34308	NM_181397	76438	Mm.41854	NM_181397	ENSMUSG00000039316	Rftn1	2310015N21Rik|AI853526	raftlin lipid raft linker 1	protein-coding	0.005000	0.422886	-80(GCCCTTTTAAGA,-,0.00),-79(CCCTTTTAAGAG,-,0.00),-78(CCTTTTAAGAGG,+,0.00),-77(CTTTTAAGAGGA,+,0.00)
mm_137790.1	chr17	29614853	29615053	+	1	NA	NA	NA	164	NM_021419	58230	Mm.305994	NM_021419	ENSMUSG00000090083	Rnf8	3830404E21Rik|AIP37|laXp180	ring finger protein 8	protein-coding	0.095000	0.671642	
mm_90721.1	chr10	4568113	4568313	-	1	NA	NA	NA	-43776	NM_001302532	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.000000	0.442786	
mm_90360.1	chr10	127165696	127165896	+	1	NA	NA	NA	-35	NM_027739	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.080000	0.691542	
mm_103932.1	chr11	83648531	83648731	-	1	NA	NA	NA	747	NM_011337	20302	Mm.1282	NM_011337	ENSMUSG00000000982	Ccl3	AI323804|G0S19-1|LD78alpha|MIP-1alpha|MIP1-(a)|MIP1-alpha|Mip1a|Scya3	chemokine (C-C motif) ligand 3	protein-coding	0.025000	0.492537	
mm_82113.1	chr9	123366837	123367037	+	1	NA	NA	NA	-3	NM_153168	102436	Mm.276076	NM_153168	ENSMUSG00000035202	Lars2	AI035546|Kiaa0028|LEURS	leucyl-tRNA synthetase, mitochondrial	protein-coding	0.060000	0.606965	
mm_166778.1	chr6	137735065	137735265	+	1	NA	NA	NA	83	NM_011499	20901	Mm.22584	NM_011499	ENSMUSG00000030224	Strap	AW557906|C78091|C79202|Unrip	serine/threonine kinase receptor associated protein	protein-coding	0.140000	0.746269	
mm_93096.1	chr10	89686178	89686378	-	1	NA	NA	NA	7	NM_198021	213326	Mm.27651	NM_198021	ENSMUSG00000069539	Scyl2	AU015688|AW536445|BC030932|CVAK104|D10Ertd802e	SCY1-like 2 (S. cerevisiae)	protein-coding	0.080000	0.671642	
mm_53715.1	chr6	143285894	143286094	+	1	NA	NA	NA	40106	NR_027803	52285	Mm.354898	NM_001033129		D6Ertd474e	1700001I24Rik|AU023129	DNA segment, Chr 6, ERATO Doi 474, expressed	ncRNA	0.040000	0.477612	-83(CCTTTAAAATTC,+,0.00)
mm_120823.1	chr14	75139533	75139733	+	1	NA	NA	NA	3208	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.000000	0.442786	
mm_165326.1	chr2	110600367	110600567	+	1	NA	NA	NA	3168	NM_001177624	241612	Mm.277148	NM_001003915	ENSMUSG00000041644	Slc5a12	AI315119|D630015G19|SMCT2	solute carrier family 5 (sodium/glucose cotransporter), member 12	protein-coding	0.020000	0.487562	
mm_163988.1	chr14	61805071	61805271	+	1	NA	NA	NA	-122798	NR_028264	668253	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.000000	0.442786	-22(GCTTATAGGCTC,+,0.00)
mm_141838.1	chr17	34659384	34659584	-	1	NA	NA	NA	-11051	NM_031176	81877	Mm.290527	NM_031176	ENSMUSG00000033327	Tnxb	Tn-mhc|Tnx	tenascin XB	protein-coding	0.015000	0.552239	
mm_85351.1	chr9	103211743	103211943	-	1	NA	NA	NA	-9778	NM_009275	20818	Mm.273053	NM_009275	ENSMUSG00000032553	Srprb	AA409543	signal recognition particle receptor, B subunit	protein-coding	0.025000	0.547264	
mm_112781.1	chr13	20090550	20090750	+	1	NA	NA	NA	143	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.140000	0.726368	
mm_117636.1	chr13	92354884	92355084	-	1	NA	NA	NA	19	NM_001311120	17686	Mm.343101	NM_010829	ENSMUSG00000014850	Msh3	D13Em1|Rep-3|Rep3	mutS homolog 3	protein-coding	0.120000	0.681592	
mm_159715.1	chr5	33658003	33658203	+	1	NA	NA	NA	-25	NM_001310541	21335	Mm.379024	NM_011524	ENSMUSG00000037313	Tacc3	Aint|C86661|Eric1	transforming, acidic coiled-coil containing protein 3	protein-coding	0.055000	0.631841	
mm_128243.1	chr15	36608698	36608898	-	1	NA	NA	NA	175	NM_008774	18458	Mm.371570	NM_008774	ENSMUSG00000022283	Pabpc1	PABP|Pabp1|PabpI|Pabpl1|ePAB	poly(A) binding protein, cytoplasmic 1	protein-coding	0.070000	0.482587	
mm_99145.1	chr11	100441851	100442051	+	1	NA	NA	NA	27	NM_025727	66720	Mm.34168	NM_025727	ENSMUSG00000001558	Klhl10	4921517C11Rik	kelch-like 10	protein-coding	0.010000	0.572139	
mm_44440.1	chr5	21424598	21424798	-	1	NA	NA	NA	-21	NM_029195	75172	Mm.426695	NM_029195	ENSMUSG00000064280	Ccdc146	4930528G09Rik|mKIAA1505	coiled-coil domain containing 146	protein-coding	0.030000	0.452736	
mm_96884.1	chr11	70432513	70432713	+	1	NA	NA	NA	33	NM_001271358	216869	Mm.203747	NM_145429	ENSMUSG00000060216	Arrb2	AI326910|AW122872	arrestin, beta 2	protein-coding	0.150000	0.776119	
mm_110545.1	chr12	55391401	55391601	-	1	NA	NA	NA	7279	NM_001310583	26443	Mm.30210	NM_011968	ENSMUSG00000021024	Psma6	IOTA	proteasome (prosome, macropain) subunit, alpha type 6	protein-coding	0.005000	0.517413	
mm_47434.1	chr5	123178167	123178367	-	1	NA	NA	NA	4419	NM_008277	15445	Mm.439709	NM_008277	ENSMUSG00000029445	Hpd	Fla|Flp|Hppd|Laf	4-hydroxyphenylpyruvic acid dioxygenase	protein-coding	0.010000	0.537313	
mm_139781.1	chr17	65783276	65783476	+	1	NA	NA	NA	21	NR_104465	70351	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0.190000	0.835821	
mm_20388.1	chr2	128968133	128968333	-	1	NA	NA	NA	831	NM_178404	78751	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	0.060000	0.532338	
mm_158338.1	chrX	134111710	134111910	-	1	NA	NA	NA	44	NM_172203	237038	Mm.67938	NM_172203	ENSMUSG00000031257	Nox1	GP91-2|MOX1|NOH-1|NOH1|NOX1a|NOX1alpha|Nox-1	NADPH oxidase 1	protein-coding	0.015000	0.432836	
mm_130232.1	chr15	96460747	96460947	-	1	NA	NA	NA	-4	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.145000	0.791045	
mm_7336.1	chr1	105356849	105357049	-	1	NA	NA	NA	-239	NM_001160368	320311	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	0.040000	0.606965	
mm_106473.1	chr11	120139315	120139515	-	1	NA	NA	NA	11936	NM_001164799	72055	Mm.253403	NM_024249	ENSMUSG00000061306	Slc38a10	1810073N04Rik	solute carrier family 38, member 10	protein-coding	0.030000	0.567164	
mm_130843.1	chr15	101918473	101918673	-	1	NA	NA	NA	6162	NM_008475	16682	Mm.46425	NM_008475	ENSMUSG00000059668	Krt4	AW108092|K4|Krt-2.4|Krt2-4	keratin 4	protein-coding	0.010000	0.472637	
mm_37400.1	chr4	121115244	121115444	-	1	NA	NA	NA	-6118	NM_001081312	69469	Mm.481120	NM_001081312	ENSMUSG00000078577	Tmco2	1700028F16Rik	transmembrane and coiled-coil domains 2	protein-coding	0.030000	0.527363	-64(GCATTTATAAAG,-,0.00)
mm_8561.1	chr1	155279263	155279463	-	1	NA	NA	NA	120660	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.020000	0.457711	
mm_97073.1	chr11	72996914	72997114	+	1	NA	NA	NA	-2131	NM_008771	18436	Mm.25722	NM_008771	ENSMUSG00000020787	P2rx1	AI323649|BB122383|P2x|Pdcd3|RP-2	purinergic receptor P2X, ligand-gated ion channel, 1	protein-coding	0.000000	0.442786	
mm_117868.1	chr13	98874756	98874956	-	1	NA	NA	NA	16186	NM_001048267	238799	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.005000	0.313433	
mm_138195.1	chr17	34287877	34288077	+	1	NA	NA	NA	-206	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.010000	0.507463	
mm_52227.1	chr6	103511803	103512003	+	1	NA	NA	NA	1027	NM_007697	12661	Mm.251288	NM_007697	ENSMUSG00000030077	Chl1	A530023M13Rik|AI465420|CALL|LICAM2	cell adhesion molecule L1-like	protein-coding	0.030000	0.547264	
mm_171900.1	chr5	4192277	4192477	+	1	NA	NA	NA	10	NM_001042670	208595	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	ENSMUSG00000053178|Gm9897	mitochondrial transcription termination factor 1b	protein-coding	0.100000	0.676617	
mm_27270.1	chr3	39937319	39937519	-	1	NA	NA	NA	585493	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.000000	0.542289	
mm_110733.1	chr12	69790164	69790364	-	1	NA	NA	NA	-80	NR_033573	74724	Mm.399254	NR_033573		4930512B01Rik	4930472D12Rik	RIKEN cDNA 4930512B01 gene	ncRNA	0.050000	0.492537	55(ACCTTTAAAAAC,-,0.00)
mm_158359.1	chrX	134600883	134601083	-	1	NA	NA	NA	22	NM_013463	11605	Mm.1114	NM_013463	ENSMUSG00000031266	Gla	Ags	galactosidase, alpha	protein-coding	0.040000	0.472637	
mm_58121.1	chr6	139501827	139502027	-	1	NA	NA	NA	-18	NM_001128090	632971	Mm.475610	NM_001128090	ENSMUSG00000092164	Rergl	EG632971	RERG/RAS-like	protein-coding	0.005000	0.407960	-33(AGCCATAAAAGG,-,0.00)
mm_16455.1	chr2	180581132	180581332	+	1	NA	NA	NA	-72	NM_028479	73247	Mm.426558	NM_028479	ENSMUSG00000027569	Mrgbp	1600027N09Rik|AW060503|C80444	MRG/MORF4L binding protein	protein-coding	0.005000	0.562189	
mm_119422.1	chr14	45341193	45341393	+	1	NA	NA	NA	-9893	NM_019637	56291	Mm.202561	NM_019637	ENSMUSG00000053205	Styx	0610039A20Rik|hStyxb	serine/threonine/tyrosine interaction protein	protein-coding	0.015000	0.333333	68(GGATTTATAAAG,-,0.00)
mm_165332.1	chr2	114047466	114047666	-	1	NA	NA	NA	5309	NM_009608	11464	Mm.686	NM_009608	ENSMUSG00000068614	Actc1	Actc-1	actin, alpha, cardiac muscle 1	protein-coding	0.010000	0.507463	
mm_53209.1	chr6	125690574	125690774	+	1	NA	NA	NA	255	NM_153589	243634	Mm.333398	NM_153589	ENSMUSG00000038115	Ano2	BC033409|Tmem16b	anoctamin 2	protein-coding	0.045000	0.656716	
mm_38782.1	chr4	148079286	148079486	-	1	NA	NA	NA	8678	NM_009642	11610	Mm.46247	NM_009642	ENSMUSG00000029007	Agtrap	3300002E14Rik|AT1R|Atrap|D4Wsu124e	angiotensin II, type I receptor-associated protein	protein-coding	0.015000	0.522388	
mm_42073.1	chr5	110109991	110110191	+	1	NA	NA	NA	-1	NM_001163996	675812	Mm.442122	NM_001163996	ENSMUSG00000023284	Zfp605	A830023I12Rik	zinc finger protein 605	protein-coding	0.020000	0.557214	
mm_156822.1	chrX	164140557	164140757	+	1	NA	NA	NA	177	NM_027286	70008	Mm.13451	NM_027286	ENSMUSG00000015405	Ace2	2010305L05Rik	angiotensin I converting enzyme (peptidyl-dipeptidase A) 2	protein-coding	0.015000	0.472637	
mm_886.1	chr1	52655430	52655630	+	1	NA	NA	NA	24825	NM_001142647	227094	Mm.83541	NM_172654	ENSMUSG00000043015	Nemp2	5330401P04Rik|9830163O08|Tmem194b	nuclear envelope integral membrane protein 2	protein-coding	0.005000	0.457711	
mm_148379.1	chr19	3205812	3206012	+	1	NA	NA	NA	-8209	NR_045304	70011	Mm.393871	NR_045304	ENSMUSG00000100969	1700030N03Rik	1700087C08Rik	RIKEN cDNA 1700030N03 gene	ncRNA	0.080000	0.641791	
mm_132607.1	chr16	38562808	38563008	+	1	NA	NA	NA	94	NM_026407	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.070000	0.611940	
mm_148650.1	chr19	5493559	5493759	+	1	NA	NA	NA	3204	NM_007687	12631	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.025000	0.616915	
mm_154134.1	chr19	57314895	57315095	-	1	NA	NA	NA	41035	NR_045319	78120	Mm.445892	NR_045319		4930449E18Rik	-	RIKEN cDNA 4930449E18 gene	ncRNA	0.075000	0.691542	
mm_77948.1	chr9	7445746	7445946	+	1	NA	NA	NA	24	NM_010809	17392	Mm.4993	NM_010809	ENSMUSG00000043613	Mmp3	EMS-2|MMP-3|SL-1|SLN-1|SLN1|STR-1|Stmy1|Str1	matrix metallopeptidase 3	protein-coding	0.010000	0.477612	-34(CTCTATAAAAGT,-,0.00)
mm_30506.1	chr3	158023915	158024115	-	1	NA	NA	NA	7739	NM_001093753	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.000000	0.298507	
mm_19770.1	chr2	105673880	105674080	-	1	NA	NA	NA	-1764	NM_001244200	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.025000	0.492537	
mm_87758.1	chr10	60279705	60279905	+	1	NA	NA	NA	2177	NM_001146121	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.000000	0.407960	-6(TTTTTTAAAGAC,+,0.00)
mm_139811.1	chr17	66480418	66480618	+	1	NA	NA	NA	-30768	NM_001114098	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.020000	0.532338	
mm_105020.1	chr11	100441704	100441904	-	1	NA	NA	NA	-120	NM_025727	66720	Mm.34168	NM_025727	ENSMUSG00000001558	Klhl10	4921517C11Rik	kelch-like 10	protein-coding	0.005000	0.532338	
mm_112994.1	chr13	21750650	21750850	+	1	NA	NA	NA	-197	NM_178211	319160	Mm.255646	NM_178211	ENSMUSG00000064288	Hist1h4k	-	histone cluster 1, H4k	protein-coding	0.050000	0.512438	-34(GCCCTTTTAAGA,-,0.00),-33(CCCTTTTAAGAG,-,0.00),-32(CCTTTTAAGAGT,+,0.00)
mm_25611.1	chr3	118429958	118430158	+	1	NA	NA	NA	-3799	NR_029551	387155		NR_029551	ENSMUSG00000065569	Mir137	Mirn137|mir-137|mmu-mir-137	microRNA 137	ncRNA	0.025000	0.442786	
mm_35670.1	chr4	43578446	43578646	-	1	NA	NA	NA	-189	NM_172866	242406	Mm.259311	NM_172866	ENSMUSG00000028468	Rgp1	1110029E03Rik|AI527196|F730001J03|mKIAA0258	RAB6A GEF compex partner 1	protein-coding	0.075000	0.641791	
mm_128053.1	chr15	25830423	25830623	-	1	NA	NA	NA	-12775	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.005000	0.378109	
mm_157236.1	chrX	17319225	17319425	-	1	NA	NA	NA	43	NM_028916	74405	Mm.248531	NM_028916	ENSMUSG00000025038	Efhc2	4933407D04Rik|mRib72-2	EF-hand domain (C-terminal) containing 2	protein-coding	0.045000	0.562189	
mm_133418.1	chr16	86044879	86045079	+	1	NA	NA	NA	-143854	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0.005000	0.412935	
mm_51676.1	chr6	86438590	86438790	+	1	NA	NA	NA	44	NM_001243741	232196	Mm.404040	NM_146170	ENSMUSG00000046679	C87436	-	expressed sequence C87436	protein-coding	0.085000	0.587065	
mm_114714.1	chr13	83575530	83575730	+	1	NA	NA	NA	2023	NM_001347569	17260	Mm.24001	NM_025282	ENSMUSG00000005583	Mef2c	5430401D19Rik|9930028G15Rik|AV011172|Mef2	myocyte enhancer factor 2C	protein-coding	0.040000	0.437811	
mm_69128.1	chr7	127026533	127026733	-	1	NA	NA	NA	-154	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.170000	0.875622	
mm_57452.1	chr6	125165226	125165426	-	1	NA	NA	NA	447	NM_008084	14433	Mm.304088	NM_008084	ENSMUSG00000057666	Gapdh	Gapd	glyceraldehyde-3-phosphate dehydrogenase	protein-coding	0.070000	0.636816	
mm_103030.1	chr11	69735262	69735462	-	1	NA	NA	NA	23271	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.010000	0.547264	
mm_72515.1	chr8	83941484	83941684	+	1	NA	NA	NA	-14110	NM_024184	66929	Mm.29680	NM_024184	ENSMUSG00000005470	Asf1b	1700003K02Rik|AA409591	anti-silencing function 1B histone chaperone	protein-coding	0.020000	0.537313	
mm_149623.1	chr19	16956017	16956217	+	1	NA	NA	NA	-1	NM_181348	353211	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.085000	0.686567	
mm_53019.1	chr6	124065707	124065907	+	1	NA	NA	NA	41049	NM_019917	56552	Mm.23795	NM_019917	ENSMUSG00000096630	Vmn2r26	V2R1|V2r1b	vomeronasal 2, receptor 26	protein-coding	0.000000	0.462687	-33(CTTTATATATGC,+,0.00)
mm_66159.1	chr7	31151558	31151758	-	1	NA	NA	NA	-608	NM_027898	52857	Mm.27366	NM_027898	ENSMUSG00000001248	Gramd1a	1300003M23Rik|AI415002|AW547240|D7Bwg0611e	GRAM domain containing 1A	protein-coding	0.050000	0.626866	
mm_134871.1	chr16	28714444	28714644	-	1	NA	NA	NA	38699	NM_010199	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.010000	0.422886	
mm_122746.1	chr14	54151305	54151505	-	1	NA	NA	NA	102524	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.000000	0.532338	
mm_149510.1	chr19	11970205	11970405	+	1	NA	NA	NA	4461	NM_001033174	76303	Mm.291279	NM_001033174	ENSMUSG00000024687	Osbp	1110018F06Rik|AW559088|mKIAA4220	oxysterol binding protein	protein-coding	0.010000	0.378109	
mm_115963.1	chr13	23892587	23892787	-	1	NA	NA	NA	22320	NM_177016	319848	Mm.97959	NM_177016	ENSMUSG00000021336	Slc17a4	9130214H05Rik	solute carrier family 17 (sodium phosphate), member 4	protein-coding	0.015000	0.467662	
mm_143200.1	chr17	62770800	62771000	-	1	NA	NA	NA	110417	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.010000	0.308458	
mm_168421.1	chr11	33160810	33161010	-	1	NA	NA	NA	2296	NM_001252261	18148	Mm.485384	NM_008722	ENSMUSG00000057113	Npm1	B23|NO38|Npm	nucleophosmin 1	protein-coding	0.005000	0.378109	
mm_57149.1	chr6	122728295	122728495	-	1	NA	NA	NA	14350	NM_011401	20527	Mm.395108	NM_011401	ENSMUSG00000003153	Slc2a3	AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3	solute carrier family 2 (facilitated glucose transporter), member 3	protein-coding	0.005000	0.577114	
mm_14783.1	chr2	145859946	145860146	+	1	NA	NA	NA	-43195	NM_026425	67877	Mm.151168	NM_026425	ENSMUSG00000002728	Naa20	1500004D14Rik|2900026I01Rik|AU041458|D2Ertd186e|Nat5	N(alpha)-acetyltransferase 20, NatB catalytic subunit	protein-coding	0.020000	0.487562	71(CCTTATAAATGG,+,0.00),71(CCTTATAAATGG,-,0.00),89(TTCTATAAAAAC,-,0.00)
mm_132794.1	chr16	45093653	45093853	+	1	NA	NA	NA	-300	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.005000	0.447761	
mm_64976.1	chr7	16874281	16874481	-	1	NA	NA	NA	-936	NM_001081655	629378	Mm.491123	NM_001081655	ENSMUSG00000078794	Dact3	EG666671|naa-3	dishevelled-binding antagonist of beta-catenin 3	protein-coding	0.050000	0.537313	
mm_16398.1	chr2	179976731	179976931	+	1	NA	NA	NA	-22	NR_033782	66730	Mm.31773	NR_033782	ENSMUSG00000085704	4921531C22Rik	-	RIKEN cDNA 4921531C22 gene	ncRNA	0.140000	0.781095	15(GGCTCTTAAAAG,-,0.00),16(GCTCTTAAAAGA,-,0.00),17(CTCTTAAAAGAC,+,0.00)
mm_120407.1	chr14	65172220	65172420	+	1	NA	NA	NA	-74214	NM_018788	54616	Mm.103748	NM_018788	ENSMUSG00000021978	Extl3	2900009G18Rik|AU040105|Ext1l|mKIAA0519	exostoses (multiple)-like 3	protein-coding	0.015000	0.582090	
mm_115767.1	chr13	19304891	19305091	-	1	NA	NA	NA	90822	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.422886	
mm_28159.1	chr3	87768871	87769071	-	1	NA	NA	NA	-18	NM_001032414	73182	Mm.158962	NM_028460	ENSMUSG00000028073	Pear1	3110045G13Rik|Jedi-1|Megf12	platelet endothelial aggregation receptor 1	protein-coding	0.110000	0.746269	
mm_78917.1	chr9	45002184	45002384	+	1	NA	NA	NA	7306	NM_007648	12501	Mm.210361	NM_007648	ENSMUSG00000032093	Cd3e	AI504783|CD3|CD3epsilon|T3e	CD3 antigen, epsilon polypeptide	protein-coding	0.025000	0.477612	
mm_102172.1	chr11	53979859	53980059	-	1	NA	NA	NA	68	NM_019723	56517	Mm.154284	NM_019723	ENSMUSG00000063652	Slc22a21	Octn3|Slc22a9	solute carrier family 22 (organic cation transporter), member 21	protein-coding	0.135000	0.671642	
mm_17181.1	chr2	25365524	25365724	-	1	NA	NA	NA	2	NM_001033293	227620	Mm.33797	NM_001033293	ENSMUSG00000026956	Uap1l1	5730445F03Rik	UDP-N-acteylglucosamine pyrophosphorylase 1-like 1	protein-coding	0.080000	0.671642	
mm_20004.1	chr2	119029294	119029494	-	1	NA	NA	NA	-1	NM_199310	269336	Mm.292465	NM_199310	ENSMUSG00000039983	Ccdc32	Gm631	coiled-coil domain containing 32	protein-coding	0.055000	0.547264	
mm_171783.1	chr5	110118482	110118682	-	1	NA	NA	NA	8490	NM_001163996	675812	Mm.442122	NM_001163996	ENSMUSG00000023284	Zfp605	A830023I12Rik	zinc finger protein 605	protein-coding	0.010000	0.447761	
mm_122231.1	chr14	33185023	33185223	-	1	NA	NA	NA	-57	NM_001146022	545030	Mm.318345	NM_001146022	ENSMUSG00000051506	Wdfy4	Gm18810	WD repeat and FYVE domain containing 4	protein-coding	0.015000	0.532338	
mm_36186.1	chr4	62228391	62228591	-	1	NA	NA	NA	-19945	NM_001290350	22696	Mm.5011	NM_009554	ENSMUSG00000028389	Zfp37	Tzn|Zfp-37	zinc finger protein 37	protein-coding	0.040000	0.517413	
mm_119270.1	chr14	34085917	34086117	+	1	NA	NA	NA	38	NM_013473	11752	Mm.3267	NM_013473	ENSMUSG00000021950	Anxa8	AI466995|Anx8	annexin A8	protein-coding	0.005000	0.567164	
mm_133050.1	chr16	57571964	57572164	+	1	NA	NA	NA	22822	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.020000	0.532338	
mm_135728.1	chr16	55828357	55828557	-	1	NA	NA	NA	-6319	NM_001159394	80859	Mm.247272	NM_030612	ENSMUSG00000035356	Nfkbiz	AA408868|INAP|Mail	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta	protein-coding	0.005000	0.348259	
mm_32727.1	chr4	116557504	116557704	+	1	NA	NA	NA	-123	NM_029868	77110	Mm.41715	NM_029868	ENSMUSG00000034042	Gpbp1l1	5330440M15Rik|BC002292	GC-rich promoter binding protein 1-like 1	protein-coding	0.110000	0.731343	
mm_115946.1	chr13	23710769	23710969	-	1	NA	NA	NA	-15	NM_010424	15216	Mm.2681	NM_010424	ENSMUSG00000006611	Hfe	MR2	hemochromatosis	protein-coding	0.010000	0.492537	
mm_98131.1	chr11	87447789	87447989	+	1	NA	NA	NA	20298	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.005000	0.393035	
mm_88302.1	chr10	75317000	75317200	+	1	NA	NA	NA	223	NM_009630	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.100000	0.731343	
mm_82299.1	chr9	7850544	7850744	-	1	NA	NA	NA	-13587	NM_007465	11797	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.005000	0.497512	
mm_9221.1	chr1	171234393	171234593	-	1	NA	NA	NA	-144	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.010000	0.522388	
mm_113849.1	chr13	47201567	47201767	+	1	NA	NA	NA	7664	NM_001170643	218215	Mm.287609	NM_146042	ENSMUSG00000038068	Rnf144b	BC025007|E130105P19Rik|Ibrdc2|Pir2	ring finger protein 144B	protein-coding	0.020000	0.457711	
mm_109763.1	chr12	117917741	117917941	+	1	NA	NA	NA	73980	NM_146040	217946	Mm.281149	NM_146040	ENSMUSG00000021175	Cdca7l	BC006933|JPO2	cell division cycle associated 7 like	protein-coding	0.005000	0.412935	-62(CCCCTTAAAGTC,+,0.00),6(GCATTAATAGCC,+,0.00)
mm_25694.1	chr3	122262577	122262777	+	1	NA	NA	NA	-11737	NM_153806	99480	Mm.398647	NM_153806	ENSMUSG00000039756	Dnttip2	4930588M11Rik|AA408582|AU014960|HSU15552	deoxynucleotidyltransferase, terminal, interacting protein 2	protein-coding	0.015000	0.447761	
mm_64131.1	chr7	141172522	141172722	+	1	NA	NA	NA	229	NM_001172100	107702	Mm.197493	NM_145135	ENSMUSG00000038650	Rnh1	AW546468|C80305|RNH	ribonuclease/angiogenin inhibitor 1	protein-coding	0.090000	0.651741	
mm_19664.1	chr2	103283511	103283711	-	1	NA	NA	NA	19585	NM_007914	13661	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding	0.010000	0.462687	
mm_63772.1	chr7	131371101	131371301	+	1	NA	NA	NA	55	NM_001039534	214580	Mm.272948	NM_177609	ENSMUSG00000063179	Pstk	5430423O14Rik|5730458D16Rik|Gm1099|R75284	phosphoseryl-tRNA kinase	protein-coding	0.115000	0.691542	
mm_170897.1	chr2	29965558	29965758	+	1	NA	NA	NA	98	NM_001309460	20740	Mm.204969	NM_001076554	ENSMUSG00000057738	Sptan1	2610027H02Rik|Spna-2|Spna2	spectrin alpha, non-erythrocytic 1	protein-coding	0.180000	0.741294	-13(GCTTATAAAAGC,+,0.00),-13(GCTTATAAAAGC,-,0.00)
mm_85812.1	chr9	110387993	110388193	-	1	NA	NA	NA	20117	NM_001081043	104831	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.020000	0.572139	
mm_15521.1	chr2	158375612	158375812	+	1	NA	NA	NA	74	NM_175692	319317	Mm.294494	NM_175692	ENSMUSG00000044349	Snhg11	A930034L06Rik|AI854265|AL022637|AW319638|E130013N09Rik	small nucleolar RNA host gene 11	protein-coding	0.085000	0.636816	
mm_31969.1	chr4	88094566	88094766	+	1	NA	NA	NA	36	NM_001081184	230393	Mm.287210	NM_001081184	ENSMUSG00000038368	Focad	-	focadhesin	protein-coding	0.105000	0.696517	
mm_6055.1	chr1	60098094	60098294	-	1	NA	NA	NA	-53	NM_001285463	241066	Mm.276441	NM_139150	ENSMUSG00000026017	Carf	Als2cr8|ECBRC-FC1|ECBRC-FC2	calcium response factor	protein-coding	0.080000	0.611940	
mm_105225.1	chr11	102296186	102296386	-	1	NA	NA	NA	343	NM_001098836	217218	Mm.390381	NM_001098836	ENSMUSG00000059995	Atxn7l3	E030022H21Rik	ataxin 7-like 3	protein-coding	0.100000	0.830846	
mm_164550.1	chr17	13590867	13591067	+	1	NA	NA	NA	-36873	NR_045437	72578	Mm.46549	NR_045436	ENSMUSG00000038347	2700054A10Rik	-	RIKEN cDNA 2700054A10 gene	ncRNA	0.005000	0.437811	
mm_77663.1	chr8	124663322	124663522	-	1	NA	NA	NA	-53	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding	0.085000	0.676617	
mm_122050.1	chr14	30125016	30125216	-	1	NA	NA	NA	102483	NM_175343	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.015000	0.467662	-65(TTATTTATAGCC,+,0.00),-13(CTTTTTAGAGCT,+,0.00)
mm_11377.1	chr2	31152239	31152439	+	1	NA	NA	NA	23	NM_178760	277463	Mm.236074	NM_178760	ENSMUSG00000000194	Gpr107	9930033D15Rik|AI790205|C530034M11|mKIAA1624	G protein-coupled receptor 107	protein-coding	0.085000	0.651741	
mm_58872.1	chr7	16983008	16983208	+	1	NA	NA	NA	-11480	NM_001101535	434130	Mm.459162	NM_001101535	ENSMUSG00000041117	Ccdc8	ENSMUSG00000041117	coiled-coil domain containing 8	protein-coding	0.045000	0.597015	
mm_170899.1	chr2	30062148	30062348	+	1	NA	NA	NA	252	NM_023871	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.065000	0.626866	
mm_62166.1	chr7	97245284	97245484	+	1	NA	NA	NA	80580	NM_001177412	244144	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.000000	0.378109	
mm_11746.1	chr2	38351585	38351785	+	1	NA	NA	NA	377	NM_010710	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.135000	0.800995	
mm_83085.1	chr9	40239809	40240009	-	1	NA	NA	NA	-29307	NM_001083917	235281	Mm.290083	NM_153522	ENSMUSG00000049281	Scn3b	1110001K16Rik|4833414B02Rik|Scnb3	sodium channel, voltage-gated, type III, beta	protein-coding	0.010000	0.447761	
mm_102549.1	chr11	61342745	61342945	-	1	NA	NA	NA	15	NM_001033542	380701	Mm.340166	NM_001033542	ENSMUSG00000069855	Slc47a2	4933429E10Rik	solute carrier family 47, member 2	protein-coding	0.130000	0.721393	
mm_88221.1	chr10	70364757	70364957	+	1	NA	NA	NA	-75811	NM_001143777	71721	Mm.477813	NM_024244	ENSMUSG00000043259	Fam13c	1200015N20Rik|C030038O19Rik|mKIAA1796	family with sequence similarity 13, member C	protein-coding	0.020000	0.467662	
mm_7181.1	chr1	92645628	92645828	-	1	NA	NA	NA	3113	NM_153114	260301	Mm.219545	NM_153114	ENSMUSG00000044055	Otos	OTOSP	otospiralin	protein-coding	0.010000	0.517413	-31(TACTATAAAGAG,-,0.00)
mm_35294.1	chr4	22486467	22486667	-	1	NA	NA	NA	1799	NM_008899	18992	Mm.129387	NM_008899	ENSMUSG00000095139	Pou3f2	9430075J19Rik|A230098E07Rik|Brn-2|Brn2|OTF-7|Otf7|oct-7	POU domain, class 3, transcription factor 2	protein-coding	0.005000	0.398010	-98(CCTTAAAAAAGG,+,0.00)
mm_102938.1	chr11	69601140	69601340	-	1	NA	NA	NA	4720	NM_013415	11932	Mm.235204	NM_013415	ENSMUSG00000041329	Atp1b2	Amog|Atpb-2	ATPase, Na+/K+ transporting, beta 2 polypeptide	protein-coding	0.040000	0.557214	
mm_137530.1	chr17	27555424	27555624	+	1	NA	NA	NA	-1050	NM_001166536	15361	Mm.4438	NM_016660	ENSMUSG00000046711	Hmga1	AL023995|Hmga1a|Hmga1b|Hmgi|Hmgiy|Hmgy	high mobility group AT-hook 1	protein-coding	0.090000	0.761194	
mm_144277.1	chr18	11657754	11657954	+	1	NA	NA	NA	505	NM_001081223	225182	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8	protein-coding	0.120000	0.691542	
mm_148165.1	chr18	77767678	77767878	-	1	NA	NA	NA	2	NM_146089	225745	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0.085000	0.661692	
mm_29009.1	chr3	101604505	101604705	-	1	NA	NA	NA	102	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.120000	0.736318	
mm_92492.1	chr10	78307281	78307481	-	1	NA	NA	NA	32826	NR_106119	102465765		NR_106119	ENSMUSG00000098885	Mir7659	Gm27433|mmu-mir-7659	microRNA 7659	ncRNA	0.025000	0.597015	
mm_93003.1	chr10	86885747	86885947	-	1	NA	NA	NA	106842	NM_175331	103466	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.005000	0.492537	
mm_122692.1	chr14	52020618	52020818	-	1	NA	NA	NA	15	NM_001253696	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.030000	0.557214	
mm_130656.1	chr15	100637032	100637232	-	1	NA	NA	NA	-192	NM_001033872	207818	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.070000	0.646766	
mm_120058.1	chr14	56777571	56777771	+	1	NA	NA	NA	645	NM_025682	66645	Mm.20129	NM_025682	ENSMUSG00000021938	Pspc1	5730470C09Rik|AI327109|AI449052|PSP1	paraspeckle protein 1	protein-coding	0.105000	0.641791	
mm_101709.1	chr11	42000692	42000892	-	1	NA	NA	NA	-78	NM_008073	14406	Mm.5309	NM_008073	ENSMUSG00000020436	Gabrg2	GABAA-R|Gabrg-2|gamma2	gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2	protein-coding	0.005000	0.388060	
mm_61372.1	chr7	70360432	70360632	+	1	NA	NA	NA	61	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.055000	0.517413	
mm_141011.1	chr17	25015596	25015796	-	1	NA	NA	NA	-390	NM_134126	106633	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	0.135000	0.721393	
mm_28823.1	chr3	96290090	96290290	-	1	NA	NA	NA	3779	NM_010186	14129	Mm.150	NM_010186	ENSMUSG00000015947	Fcgr1	AI323638|AV092959|CD64|FcgammaRI|IGGHAFC	Fc receptor, IgG, high affinity I	protein-coding	0.005000	0.437811	
mm_19166.1	chr2	84331996	84332196	-	1	NA	NA	NA	93170	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.000000	0.298507	
mm_90810.1	chr10	7780795	7780995	-	1	NA	NA	NA	22	NM_145418	215751	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	0.115000	0.756219	
mm_137506.1	chr17	27029292	27029492	+	1	NA	NA	NA	133	NM_027544	70772	Mm.440437	NM_027544	ENSMUSG00000048731	Ggnbp1	0610031G08Rik|mdf	gametogenetin binding protein 1	protein-coding	0.030000	0.626866	
mm_151603.1	chr19	3575604	3575804	-	1	NA	NA	NA	45	NM_001164159	52036	Mm.284686	NM_028999	ENSMUSG00000024908	Ppp6r3	4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558	protein phosphatase 6, regulatory subunit 3	protein-coding	0.095000	0.666667	
mm_167658.1	chr9	70942734	70942934	+	1	NA	NA	NA	-8026	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.015000	0.517413	
mm_77350.1	chr8	119575033	119575233	-	1	NA	NA	NA	67	NM_175185	72552	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	0.160000	0.791045	
mm_38591.1	chr4	141822165	141822365	-	1	NA	NA	NA	3740	NM_007919	13706	Mm.45316	NM_007919	ENSMUSG00000058579	Cela2a	Ela-2|Ela2|Ela2a	chymotrypsin-like elastase family, member 2A	protein-coding	0.020000	0.606965	
mm_149411.1	chr19	11411780	11411980	+	1	NA	NA	NA	4219	NM_029499	64380	Mm.440715	NM_029499	ENSMUSG00000024675	Ms4a4c	5830413L19Rik|AI449185|Ms4a9	membrane-spanning 4-domains, subfamily A, member 4C	protein-coding	0.000000	0.482587	
mm_50745.1	chr6	52736994	52737194	+	1	NA	NA	NA	23365	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.010000	0.402985	86(CCTTTTCTAGTG,+,0.00)
mm_103281.1	chr11	72207351	72207551	-	1	NA	NA	NA	-103	NM_026559	52700	Mm.27670	NM_026559	ENSMUSG00000020803	Txndc17	4831443O22Rik|D11Ertd672e|TRP14|Txnl5	thioredoxin domain containing 17	protein-coding	0.060000	0.611940	
mm_13552.1	chr2	112241944	112242144	+	1	NA	NA	NA	2203	NM_207206	99010	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.035000	0.557214	
mm_120604.1	chr14	70100014	70100214	+	1	NA	NA	NA	-31	NM_021328	57784	Mm.24186	NM_021328	ENSMUSG00000022089	Bin3	1700015F07Rik	bridging integrator 3	protein-coding	0.070000	0.601990	
mm_116201.1	chr13	32338421	32338621	-	1	NA	NA	NA	23	NM_146041	218138	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	0.130000	0.726368	
mm_170881.1	chr2	20900037	20900237	+	1	NA	NA	NA	67584	NM_001081364	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.070000	0.527363	-40(AACTTTAAATGG,-,0.00)
mm_84498.1	chr9	66915401	66915601	-	1	NA	NA	NA	4204	NM_173413	235442	Mm.260376	NM_173413	ENSMUSG00000036943	Rab8b	5930437D16|D330025I23Rik	RAB8B, member RAS oncogene family	protein-coding	0.020000	0.427861	
mm_76517.1	chr8	87470356	87470556	-	1	NA	NA	NA	2136	NM_019626	12404	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0.080000	0.597015	
mm_41858.1	chr5	104440411	104440611	+	1	NA	NA	NA	4319	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.020000	0.457711	
mm_123153.1	chr14	57104601	57104801	-	1	NA	NA	NA	1	NM_008125	14619	Mm.390683	NM_008125	ENSMUSG00000046352	Gjb2	AI325222|Cnx26|Cx26|Gjb-2	gap junction protein, beta 2	protein-coding	0.115000	0.691542	
mm_71435.1	chr8	46506046	46506246	+	1	NA	NA	NA	15180	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.015000	0.517413	
mm_112069.1	chr12	112405629	112405829	-	1	NA	NA	NA	17469	NR_036459	100504733	Mm.255309	NM_176956		A730018C14Rik	-	RIKEN cDNA A730018C14 gene	ncRNA	0.010000	0.547264	
mm_6673.1	chr1	80340533	80340733	-	1	NA	NA	NA	57	NM_001313728	26554	Mm.12665	NM_016716	ENSMUSG00000004364	Cul3	KIAA0617	cullin 3	protein-coding	0.135000	0.726368	
mm_85839.1	chr9	110532717	110532917	-	1	NA	NA	NA	220	NM_001081340	235626	Mm.288949	NM_001081340	ENSMUSG00000044791	Setd2	4921524K10Rik|BC031601|KMT3A	SET domain containing 2	protein-coding	0.135000	0.731343	
mm_11882.1	chr2	49619162	49619362	+	1	NA	NA	NA	-52	NM_008449	16574	Mm.256342	NM_008449	ENSMUSG00000026764	Kif5c	KINN|Khc|NKHC|NKHC2	kinesin family member 5C	protein-coding	0.085000	0.681592	
mm_85722.1	chr9	108305880	108306080	-	1	NA	NA	NA	179	NM_133986	102791	Mm.24670	NM_133986	ENSMUSG00000039461	Tcta	9130410M22Rik|AW553637|C85065|Tctal	T cell leukemia translocation altered gene	protein-coding	0.090000	0.611940	
mm_170358.1	chr18	52529483	52529683	-	1	NA	NA	NA	138	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.055000	0.621891	
mm_96938.1	chr11	70528822	70529022	+	1	NA	NA	NA	3565	NM_008946	19175	Mm.98	NM_008946	ENSMUSG00000018286	Psmb6	Lmp19|Mpnd	proteasome (prosome, macropain) subunit, beta type 6	protein-coding	0.010000	0.492537	
mm_91060.1	chr10	18941499	18941699	-	1	NA	NA	NA	70364	NM_001166402	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.015000	0.452736	-34(GCCTTTAAAAAC,-,0.00)
mm_77625.1	chr8	123960101	123960301	-	1	NA	NA	NA	-10936	NM_172288	234865	Mm.267812	NM_172288	ENSMUSG00000039509	Nup133	mermaid	nucleoporin 133	protein-coding	0.035000	0.562189	
mm_95890.1	chr11	58171568	58171768	+	1	NA	NA	NA	14	NM_175001	216767	Mm.259907	NM_175001	ENSMUSG00000020514	Mrpl22	E030011D16Rik|HSPC158|MRP-L25|Rpml25	mitochondrial ribosomal protein L22	protein-coding	0.075000	0.562189	
mm_29089.1	chr3	104637459	104637659	-	1	NA	NA	NA	-1105	NM_009196	20501	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.015000	0.343284	
mm_5327.1	chr1	23383087	23383287	-	1	NA	NA	NA	-12	NM_001081079	70155	Mm.28013	NM_001081079	ENSMUSG00000026158	Ogfrl1	2210417C17Rik	opioid growth factor receptor-like 1	protein-coding	0.180000	0.860697	
mm_96592.1	chr11	69090736	69090936	+	1	NA	NA	NA	2308	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.015000	0.427861	
mm_9566.1	chr1	173979342	173979542	-	1	NA	NA	NA	3402	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.000000	0.293532	
mm_135535.1	chr16	49770697	49770897	-	1	NA	NA	NA	71503	NM_028680	73916	Mm.241276	NM_028680	ENSMUSG00000032965	Ift57	4833420A15Rik|Esrrbl1|Hippi|MHS4R2	intraflagellar transport 57	protein-coding	0.015000	0.457711	
mm_54363.1	chr6	31114996	31115196	-	1	NA	NA	NA	-52003	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.015000	0.427861	
mm_57847.1	chr6	129468802	129469002	-	1	NA	NA	NA	3877	NM_001309637	56644	Mm.239516	NM_020008	ENSMUSG00000079293	Clec7a	BGR|Clecsf12|beta-GR	C-type lectin domain family 7, member a	protein-coding	0.010000	0.482587	
mm_94559.1	chr11	11641005	11641205	+	1	NA	NA	NA	-13267	NM_001305143	102631730	Mm.159430	NM_001305143	ENSMUSG00000062511	4930512M02Rik	-	RIKEN cDNA 4930512M02 gene	protein-coding	0.005000	0.358209	
mm_26553.1	chr3	146404919	146405119	+	1	NA	NA	NA	377	NM_138744	99167	Mm.200783	NM_138744	ENSMUSG00000036825	Ssx2ip	AU014939|AU042321|Adip	synovial sarcoma, X 2 interacting protein	protein-coding	0.110000	0.706468	
mm_1069.1	chr1	59237381	59237581	+	1	NA	NA	NA	-250	NM_146109	74018	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	amyotrophic lateral sclerosis 2 (juvenile)	protein-coding	0.045000	0.472637	
mm_844.1	chr1	51987028	51987228	+	1	NA	NA	NA	-20	NM_001308266	20849	Mm.1550	NM_011487	ENSMUSG00000062939	Stat4	-	signal transducer and activator of transcription 4	protein-coding	0.020000	0.522388	
mm_5399.1	chr1	33669701	33669901	-	1	NA	NA	NA	-7	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	0.100000	0.641791	
mm_6767.1	chr1	84114913	84115113	-	1	NA	NA	NA	103948	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.452736	
mm_96603.1	chr11	69091076	69091276	+	1	NA	NA	NA	2648	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.005000	0.437811	
mm_120204.1	chr14	61681882	61682082	+	1	NA	NA	NA	391	NR_028264	668253	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.065000	0.587065	
mm_64444.1	chr7	142653762	142653962	+	1	NA	NA	NA	1134	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.050000	0.542289	
mm_146537.1	chr18	5592350	5592550	-	1	NA	NA	NA	-13	NR_033552	791318	Mm.84339	NR_033552	ENSMUSG00000063087	Gm10125	ENSMUSG00000063087|Zeb1os	predicted gene 10125	ncRNA	0.220000	0.830846	
mm_155886.1	chrX	101533428	101533628	+	1	NA	NA	NA	793	NM_001290729	270627	Mm.261750	NM_001081008	ENSMUSG00000031314	Taf1	AU015687|B430306D02Rik|Ccg-1|Ccg1|KAT4|N-TAF1|TAFII250|Taf2a|p250	TATA-box binding protein associated factor 1	protein-coding	0.015000	0.487562	-42(CCTTTTCAGGAG,+,0.00)
mm_43907.1	chr5	144255714	144255914	+	1	NA	NA	NA	589	NM_018772	55950	Mm.38011	NM_018772	ENSMUSG00000047843	Bri3	I3	brain protein I3	protein-coding	0.075000	0.681592	
mm_22262.1	chr2	178369277	178369477	-	1	NA	NA	NA	38281	NM_177191	320558	Mm.70781	NM_177191	ENSMUSG00000060445	Sycp2	3830402K23Rik|4930518F03Rik	synaptonemal complex protein 2	protein-coding	0.000000	0.328358	
mm_40309.1	chr5	43842028	43842228	+	1	NA	NA	NA	23235	NM_009763	12182	Mm.246332	NM_009763	ENSMUSG00000029082	Bst1	114/A10|A530073F09|BP-3|Bp3|Bsta1|CD157|Ly65	bone marrow stromal cell antigen 1	protein-coding	0.010000	0.457711	
mm_168174.1	chr10	56030982	56031182	+	1	NA	NA	NA	-75835	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding	0.030000	0.402985	-49(TTCTATATGAGG,-,0.00)
mm_159219.1	chr2	127522007	127522207	-	1	NA	NA	NA	-13	NR_110989	56461	Mm.315292	NM_019789	ENSMUSG00000079056	Kcnip3	4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849	Kv channel interacting protein 3, calsenilin	protein-coding	0.020000	0.577114	
mm_69043.1	chr7	126800428	126800628	-	1	NA	NA	NA	-81	NM_001177308	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.000000	0.502488	-4(GCCTTTAGACTC,+,0.00)
mm_36573.1	chr4	87983194	87983394	-	1	NA	NA	NA	50113	NM_027326	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.005000	0.457711	
mm_146831.1	chr18	21652268	21652468	-	1	NA	NA	NA	0	NM_001081403	225266	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	0.035000	0.621891	
mm_39130.1	chr4	155086157	155086357	-	1	NA	NA	NA	40	NM_026395	67830	Mm.241604	NM_026395	ENSMUSG00000029048	Rer1	1110060F11Rik|5830454N22Rik|AU043380	retention in endoplasmic reticulum sorting receptor 1	protein-coding	0.115000	0.746269	
mm_32548.1	chr4	109385905	109386105	+	1	NA	NA	NA	20252	NR_131195	102635290	Mm.427859	NR_131195		Ttc39aos1	Gm12750|OTTMUSG00000008290|lincRNA-EPS	Ttc39a opposite strand RNA 1	ncRNA	0.010000	0.328358	86(AAGTATTAAAGC,-,0.00)
mm_138056.1	chr17	33926567	33926767	+	1	NA	NA	NA	-3227	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.010000	0.562189	
mm_25345.1	chr3	106722142	106722342	+	1	NA	NA	NA	560	NM_001286685	321000	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	0.065000	0.611940	
mm_82293.1	chr9	7836705	7836905	-	1	NA	NA	NA	1	NM_001291503	11797	Mm.335659	NM_007465	ENSMUSG00000057367	Birc2	AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1	baculoviral IAP repeat-containing 2	protein-coding	0.040000	0.527363	
mm_127934.1	chr15	10485862	10486062	-	1	NA	NA	NA	-25	NM_026396	67832	Mm.28057	NM_026396	ENSMUSG00000022247	Brix1	1110064N10Rik|Bxdc2|C76935	BRX1, biogenesis of ribosomes	protein-coding	0.115000	0.641791	
mm_99449.1	chr11	102434030	102434230	+	1	NA	NA	NA	3808	NM_008175	14824	Mm.1568	NM_008175	ENSMUSG00000034708	Grn	Pgrn|epithelin	granulin	protein-coding	0.025000	0.572139	
mm_130112.1	chr15	89476256	89476456	-	1	NA	NA	NA	104	NR_077233	100532730	Mm.461541	NR_077233		C230037L18Rik	-	RIKEN cDNA C230037L18 gene	ncRNA	0.080000	0.656716	
mm_109097.1	chr12	104992489	104992689	+	1	NA	NA	NA	6088	NM_001042699	212073	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.015000	0.577114	
mm_49043.1	chr6	4760133	4760333	+	1	NA	NA	NA	12927	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.477612	
mm_1513.1	chr1	72583164	72583364	+	1	NA	NA	NA	13	NM_018817	54380	Mm.274232	NM_018817	ENSMUSG00000039354	Smarcal1	6030401P21Rik|AI851716|Mharp	SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1	protein-coding	0.045000	0.512438	
mm_32841.1	chr4	117835308	117835508	+	1	NA	NA	NA	150	NM_008135	14664	Mm.244549	NM_008135	ENSMUSG00000028542	Slc6a9	Glyt-1|Glyt1	solute carrier family 6 (neurotransmitter transporter, glycine), member 9	protein-coding	0.075000	0.661692	
mm_61685.1	chr7	81004910	81005110	+	1	NA	NA	NA	11326	NM_178707	233410	Mm.29525	NM_178707	ENSMUSG00000005621	Zfp592	8430405N24|A730014M16Rik|Znf592|mKIAA0211	zinc finger protein 592	protein-coding	0.005000	0.492537	
mm_116678.1	chr13	49242812	49243012	-	1	NA	NA	NA	5251	NM_025491	66329	Mm.34308	NM_025491	ENSMUSG00000021384	Susd3	1700017I11Rik|2810440J20Rik	sushi domain containing 3	protein-coding	0.035000	0.577114	
mm_163372.1	chr12	41013208	41013408	+	1	NA	NA	NA	-10782	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.000000	0.373134	
mm_58996.1	chr7	19176328	19176528	+	1	NA	NA	NA	7	NM_001347582	72205	Mm.154121	NM_028153	ENSMUSG00000040811	Eml2	1600029N02Rik|EMAP-2	echinoderm microtubule associated protein like 2	protein-coding	0.045000	0.582090	
mm_19530.1	chr2	94264655	94264855	-	1	NA	NA	NA	-3356	NR_030431	735259		NR_030431	ENSMUSG00000076335	Mir670	Mirn670|mir-670|mmu-mir-670	microRNA 670	ncRNA	0.030000	0.537313	
mm_171094.1	chr3	12855720	12855920	+	1	NA	NA	NA	-615835	NM_178631	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.005000	0.472637	-50(CTATATAAAAGA,-,0.00)
mm_25554.1	chr3	116008249	116008449	+	1	NA	NA	NA	52	NM_001163514	58193	Mm.41739	NM_021388	ENSMUSG00000027963	Extl2	3000001D04Rik|AW146439	exostoses (multiple)-like 2	protein-coding	0.035000	0.547264	
mm_102126.1	chr11	53423029	53423229	-	1	NA	NA	NA	7	NM_153069	259301	Mm.24283	NM_153069	ENSMUSG00000036216	Leap2	leap-2	liver-expressed antimicrobial peptide 2	protein-coding	0.010000	0.482587	-37(GTCTATAAAAGG,-,0.00)
mm_45860.1	chr5	87843309	87843509	-	1	NA	NA	NA	-6950	NR_003652	654494	Mm.475331	NM_001039193	ENSMUSG00000067156	Gm7337	EG654494	DAZ interacting protein 1 pseudogene	pseudo	0.010000	0.542289	
mm_136332.1	chr16	92399975	92400175	-	1	NA	NA	NA	3	NM_019466	54720	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.065000	0.582090	-34(AGCTTTTTAAGC,-,0.00),-32(CTTTTTAAGCTG,+,0.00)
mm_97044.1	chr11	72361819	72362019	+	1	NA	NA	NA	-37	NM_011569	21689	Mm.42257	NM_011569	ENSMUSG00000020799	Tekt1	MT14	tektin 1	protein-coding	0.055000	0.547264	
mm_49308.1	chr6	18169702	18169902	+	1	NA	NA	NA	-885	NM_021050	12638	Mm.15621	NM_021050	ENSMUSG00000041301	Cftr	AW495489|Abcc7	cystic fibrosis transmembrane conductance regulator	protein-coding	0.000000	0.447761	
mm_112594.1	chr13	14063699	14063899	+	1	NA	NA	NA	15	NM_198122	94246	Mm.439784	NM_194262	ENSMUSG00000039219	Arid4b	BCAA|BRCAA1|RBBP1L1|Rbp1l1|SAP180	AT rich interactive domain 4B (RBP1-like)	protein-coding	0.085000	0.691542	
mm_90486.1	chr10	127901949	127902149	+	1	NA	NA	NA	3514	NM_027301	70061	Mm.158320	NM_027301	ENSMUSG00000040127	Sdr9c7	1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro	4short chain dehydrogenase/reductase family 9C, member 7	protein-coding	0.015000	0.557214	
mm_84116.1	chr9	58462723	58462923	-	1	NA	NA	NA	7650	NR_040736	74879	Mm.416924	NR_040736	ENSMUSG00000097651	4930461G14Rik	-	RIKEN cDNA 4930461G14 gene	ncRNA	0.005000	0.512438	
mm_155978.1	chrX	106126761	106126961	+	1	NA	NA	NA	-16414	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.015000	0.407960	
mm_43021.1	chr5	123907502	123907702	+	1	NA	NA	NA	327	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.050000	0.626866	
mm_77579.1	chr8	123655224	123655424	-	1	NA	NA	NA	1395	NM_133955	69581	Mm.168257	NM_133955	ENSMUSG00000039960	Rhou	2310026M05Rik|AI182090|Arhu|CDC42L1|G28K|WRCH-1|WRCH1|mG28K	ras homolog family member U	protein-coding	0.010000	0.522388	
mm_56750.1	chr6	115994787	115994987	-	1	NA	NA	NA	118	NM_026376	67784	Mm.3085	NM_026376	ENSMUSG00000030123	Plxnd1	6230425C21Rik|b2b1863Clo|b2b553Clo	plexin D1	protein-coding	0.190000	0.860697	
mm_26930.1	chr3	20262387	20262587	-	1	NA	NA	NA	13246	NM_029706	76703	Mm.34692	NM_029706	ENSMUSG00000011463	Cpb1	0910001A18Rik|1810063F02Rik|2210008M23Rik|AI504870	carboxypeptidase B1 (tissue)	protein-coding	0.025000	0.512438	
mm_130463.1	chr15	98609229	98609429	-	1	NA	NA	NA	-1696	NM_007405	11512	Mm.157091	NM_007405	ENSMUSG00000022994	Adcy6	AC6|mKIAA0422	adenylate cyclase 6	protein-coding	0.160000	0.825871	
mm_125298.1	chr15	37090263	37090463	+	1	NA	NA	NA	-82961	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.000000	0.388060	
mm_40131.1	chr5	35042211	35042411	+	1	NA	NA	NA	802	NM_019447	54426	Mm.27369	NM_019447	ENSMUSG00000029102	Hgfac	HGFA	hepatocyte growth factor activator	protein-coding	0.020000	0.572139	
mm_48100.1	chr5	137066866	137067066	-	1	NA	NA	NA	5306	NM_008871	18787	Mm.250422	NM_008871	ENSMUSG00000037411	Serpine1	PAI-1|PAI1|Planh1	serine (or cysteine) peptidase inhibitor, clade E, member 1	protein-coding	0.035000	0.552239	
mm_10843.1	chr2	24975214	24975414	+	1	NA	NA	NA	-216	NM_001031808	107733	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	0.080000	0.646766	
mm_34399.1	chr4	145209876	145210076	+	1	NA	NA	NA	-14971	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.010000	0.497512	-84(TCTTTTAAATGG,+,0.00)
mm_153817.1	chr19	46186730	46186930	-	1	NA	NA	NA	34272	NM_178930	107338	Mm.271620	NM_178930	ENSMUSG00000025224	Gbf1	1700083E03Rik|AI035702|AW049900|mKIAA0248	golgi-specific brefeldin A-resistance factor 1	protein-coding	0.010000	0.502488	
mm_36579.1	chr4	88032686	88032886	-	1	NA	NA	NA	621	NM_027326	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.120000	0.696517	
mm_131054.1	chr16	4068808	4069008	+	1	NA	NA	NA	8902	NM_026508	68015	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0.010000	0.557214	
mm_157093.1	chrX	9437107	9437307	-	1	NA	NA	NA	32117	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.368159	
mm_46900.1	chr5	114128095	114128295	-	1	NA	NA	NA	-19	NM_175016	231642	Mm.332593	NM_175016	ENSMUSG00000044339	Alkbh2	9530023G02|AU016977|Abh2|mABH2	alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase	protein-coding	0.095000	0.746269	
mm_105940.1	chr11	115187732	115187932	-	1	NA	NA	NA	345	NM_001033393	320534	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	0.040000	0.527363	50(TCTTTTAAATGG,+,0.00)
mm_140318.1	chr17	86360228	86360428	+	1	NA	NA	NA	-73150	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.005000	0.457711	
mm_51404.1	chr6	78373131	78373331	+	1	NA	NA	NA	2346	NM_011036	18489	Mm.2553	NM_011036	ENSMUSG00000071356	Reg3b	HIP|PAP1|Pap|REG-III	regenerating islet-derived 3 beta	protein-coding	0.010000	0.398010	
mm_65398.1	chr7	25179680	25179880	-	1	NA	NA	NA	24711	NR_045848	434147	Mm.59171	NM_001033781	ENSMUSG00000074274	D930028M14Rik	EG434147	RIKEN cDNA D930028M14 gene	ncRNA	0.145000	0.766169	
mm_123401.1	chr14	63500077	63500277	-	1	NA	NA	NA	8915	NM_021480	58865	Mm.354229	NM_021480	ENSMUSG00000021953	Tdh	-	L-threonine dehydrogenase	protein-coding	0.035000	0.567164	
mm_149348.1	chr19	10859793	10859993	+	1	NA	NA	NA	9886	NM_133804	98170	Mm.490254	NM_133804	ENSMUSG00000024736	Tmem132a	6720481D13Rik|Hspa5bp1|Orai1|R74613	transmembrane protein 132A	protein-coding	0.005000	0.492537	
mm_153781.1	chr19	45783435	45783635	-	1	NA	NA	NA	-244	NM_023799	76055	Mm.122725	NM_023799	ENSMUSG00000025220	Mgea5	2810009A20Rik|4833427O07Rik|5830447M11Rik|AA408215|Hy5|Ncoat|OGA|mKIAA0679	meningioma expressed antigen 5 (hyaluronidase)	protein-coding	0.095000	0.681592	
mm_96519.1	chr11	68496354	68496554	+	1	NA	NA	NA	-6565	NM_001004435	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.005000	0.562189	
mm_149259.1	chr19	10525221	10525421	+	1	NA	NA	NA	77	NM_172302	269061	Mm.490260	NM_172302	ENSMUSG00000034820	Cpsf7	5730453I16Rik|AL022757|C330017N18Rik	cleavage and polyadenylation specific factor 7	protein-coding	0.170000	0.815920	
mm_48046.1	chr5	136458414	136458614	-	1	NA	NA	NA	-82711	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	0.000000	0.457711	
mm_75329.1	chr8	43180156	43180356	-	1	NA	NA	NA	-2866	NM_001160412	622117	Mm.390031	NM_001160412	ENSMUSG00000091490	Triml2	EG622117|Tu4	tripartite motif family-like 2	protein-coding	0.005000	0.467662	
mm_19640.1	chr2	102835694	102835894	-	1	NA	NA	NA	65871	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.000000	0.462687	
mm_95058.1	chr11	32405529	32405729	+	1	NA	NA	NA	-49743	NM_173784	327900	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	0.000000	0.383085	
mm_143093.1	chr17	57080560	57080760	-	1	NA	NA	NA	-2150	NM_153551	70785	Mm.284447	NM_153551	ENSMUSG00000002668	Dennd1c	4432409M07Rik	DENN/MADD domain containing 1C	protein-coding	0.010000	0.577114	
mm_103154.1	chr11	70394320	70394520	-	1	NA	NA	NA	15611	NM_029231	75273	Mm.340601	NM_029231	ENSMUSG00000018921	Pelp1	4930563C04Rik|MNAR	proline, glutamic acid and leucine rich protein 1	protein-coding	0.005000	0.582090	
mm_116892.1	chr13	55362509	55362709	-	1	NA	NA	NA	174	NM_025828	66890	Mm.38868	NM_025828	ENSMUSG00000021484	Lman2	1110003H06Rik|1300009F09Rik|AA408240|AL023023|AU040819|GP36B|VIP36	lectin, mannose-binding 2	protein-coding	0.050000	0.631841	
mm_10688.1	chr2	22622154	22622354	+	1	NA	NA	NA	-73	NM_008078	14417	Mm.4784	NM_008078	ENSMUSG00000026787	Gad2	6330404F12Rik|GAD(65)|GAD65|Gad-2	glutamic acid decarboxylase 2	protein-coding	0.055000	0.631841	
mm_24774.1	chr3	95530091	95530291	+	1	NA	NA	NA	3405	NM_001267695	13040	Mm.3619	NM_021281	ENSMUSG00000038642	Ctss	Cats	cathepsin S	protein-coding	0.005000	0.437811	
mm_71073.1	chr8	34154615	34154815	+	1	NA	NA	NA	152	NM_026432	67887	Mm.290353	NM_026432	ENSMUSG00000031532	Saraf	1810045K07Rik|Tmem66	store-operated calcium entry-associated regulatory factor	protein-coding	0.095000	0.696517	-77(CCTTTTATGGTG,+,0.00)
mm_130187.1	chr15	93595793	93595993	-	1	NA	NA	NA	-2	NM_001033217	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.165000	0.796020	
mm_84360.1	chr9	64737540	64737740	-	1	NA	NA	NA	116	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.120000	0.711443	46(CCTCTTTAAAGG,-,0.00),47(CTCTTTAAAGGT,+,0.00),48(TCTTTAAAGGTG,+,0.00)
mm_12275.1	chr2	68999854	69000054	+	1	NA	NA	NA	-135846	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.015000	0.343284	
mm_41720.1	chr5	102207111	102207311	+	1	NA	NA	NA	-137290	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.045000	0.457711	
mm_84703.1	chr9	72663215	72663415	-	1	NA	NA	NA	968	NM_010890	17999	Mm.279923	NM_010890	ENSMUSG00000032216	Nedd4	AA959633|AL023035|AU019897|E430025J12Rik|Nedd4-1|Nedd4a|mKIAA0093	neural precursor cell expressed, developmentally down-regulated 4	protein-coding	0.075000	0.577114	
mm_3911.1	chr1	161968862	161969062	+	1	NA	NA	NA	186	NM_001204905	75368	Mm.108728	NM_001204904	ENSMUSG00000086277	4930558K02Rik	-	RIKEN cDNA 4930558K02 gene	protein-coding	0.010000	0.532338	
mm_1861.1	chr1	84939232	84939432	+	1	NA	NA	NA	-4249	NM_027921	71781	Mm.158754	NM_027921	ENSMUSG00000026220	Slc16a14	1110004H10Rik	solute carrier family 16 (monocarboxylic acid transporters), member 14	protein-coding	0.010000	0.363184	-5(TTCTTTTTAAGG,-,0.00),-3(CTTTTTAAGGTT,+,0.00)
mm_89714.1	chr10	98798817	98799017	+	1	NA	NA	NA	-116235	NM_026482	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.000000	0.348259	
mm_37844.1	chr4	132148824	132149024	-	1	NA	NA	NA	-4438	NM_013622	18386	Mm.5243	NM_013622	ENSMUSG00000050511	Oprd1	DOR|DOR-1|Nbor|mDOR	opioid receptor, delta 1	protein-coding	0.040000	0.532338	-43(GTCTCTTTAAGA,-,0.00)
mm_2005.1	chr1	87127234	87127434	+	1	NA	NA	NA	2326	NM_007432	11648	Mm.377076	NM_007432	ENSMUSG00000036500	Akp3	Akp-3|IAP|dIAP	alkaline phosphatase 3, intestine, not Mn requiring	protein-coding	0.050000	0.597015	
mm_97899.1	chr11	83409587	83409787	+	1	NA	NA	NA	-385	NM_001013386	276952	Mm.66275	NM_001013386	ENSMUSG00000020684	Rasl10b	B230331P10Rik|Gm729|VTS58635	RAS-like, family 10, member B	protein-coding	0.160000	0.820896	
mm_63220.1	chr7	126293724	126293924	+	1	NA	NA	NA	21205	NM_145587	104175	Mm.29660	NM_145587	ENSMUSG00000042978	Sbk1	Sbk	SH3-binding kinase 1	protein-coding	0.005000	0.597015	
mm_150613.1	chr19	40908569	40908769	+	1	NA	NA	NA	13964	NM_028319	72672	Mm.313523	NM_028319	ENSMUSG00000049164	Zfp518a	2810401C22Rik|6330417C12Rik|AI426493|Zfp518|Znf518|Znf518a|mKIAA0335	zinc finger protein 518A	protein-coding	0.015000	0.393035	
mm_100012.1	chr11	114877926	114878126	+	1	NA	NA	NA	-12015	NM_001347654	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.030000	0.502488	
mm_155304.1	chrX	61185784	61185984	+	1	NA	NA	NA	-326	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.010000	0.393035	
mm_19642.1	chr2	102835801	102836001	-	1	NA	NA	NA	65764	NM_001177785	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.000000	0.467662	
mm_42230.1	chr5	113538950	113539150	+	1	NA	NA	NA	-11370	NM_177292	320916	Mm.102783	NM_177292	ENSMUSG00000063430	Wscd2	4933413A10Rik|C530024P05Rik|Gm450	WSC domain containing 2	protein-coding	0.000000	0.552239	
mm_45493.1	chr5	71658003	71658203	-	1	NA	NA	NA	205	NM_010251	14397	Mm.248731	NM_010251	ENSMUSG00000029211	Gabra4	Gabra-4	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 4	protein-coding	0.090000	0.676617	
mm_21065.1	chr2	152792480	152792680	-	1	NA	NA	NA	38137	NM_001289716	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.005000	0.517413	
mm_47686.1	chr5	129008416	129008616	-	1	NA	NA	NA	56	NM_001286034	13852	Mm.260716	NM_007941	ENSMUSG00000029428	Stx2	AW538950|Epim|G1-536-1|Syn-2|repro34	syntaxin 2	protein-coding	0.140000	0.810945	
mm_159281.1	chr2	165877483	165877683	-	1	NA	NA	NA	854	NM_001291158	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.010000	0.422886	
mm_48286.1	chr5	138172262	138172462	-	1	NA	NA	NA	341	NM_021392	11781	Mm.113205	NM_021392	ENSMUSG00000019518	Ap4m1	4930443L05Rik|Ap4m4	adaptor-related protein complex AP-4, mu 1	protein-coding	0.055000	0.577114	
mm_157070.1	chrX	8193292	8193492	-	1	NA	NA	NA	120	NM_007898	13595	Mm.27183	NM_007898	ENSMUSG00000031168	Ebp	AI255399|Pabp|SI|Td|mSI	phenylalkylamine Ca2+ antagonist (emopamil) binding protein	protein-coding	0.015000	0.447761	-7(GCTTTTAAGAAC,+,0.00)
mm_12866.1	chr2	83812575	83812775	+	1	NA	NA	NA	-53	NM_175514	241520	Mm.330351	NM_175514	ENSMUSG00000048388	Fam171b	D430039N05Rik	family with sequence similarity 171, member B	protein-coding	0.135000	0.756219	
mm_127780.1	chr15	3542256	3542456	-	1	NA	NA	NA	39486	NM_001286370	14600	Mm.3986	NM_010284	ENSMUSG00000055737	Ghr	GHBP|GHR/BP	growth hormone receptor	protein-coding	0.000000	0.298507	
mm_25750.1	chr3	123267373	123267573	+	1	NA	NA	NA	-23	NM_027135	69608	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	0.175000	0.796020	
mm_99653.1	chr11	105634443	105634643	+	1	NA	NA	NA	44557	NM_181071	77097	Mm.22501	NM_175492	ENSMUSG00000053580	Tanc2	3526402J09Rik|5730590C14Rik	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2	protein-coding	0.005000	0.383085	
mm_24789.1	chr3	95545260	95545460	+	1	NA	NA	NA	-14317	NM_026489	67981	Mm.179050	NM_026489	ENSMUSG00000028109	Hormad1	4921522K05Rik|Nohma	HORMA domain containing 1	protein-coding	0.020000	0.542289	
mm_53316.1	chr6	129185947	129186147	+	1	NA	NA	NA	5432	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.005000	0.407960	
mm_123106.1	chr14	55882786	55882986	-	1	NA	NA	NA	1370	NM_019820	56410	Mm.97163	NM_019820	ENSMUSG00000040380	Cbln3	-	cerebellin 3 precursor protein	protein-coding	0.020000	0.527363	-85(GCCTTTAAACGG,+,0.00)
mm_152094.1	chr19	6909480	6909680	-	1	NA	NA	NA	65	NM_012021	54683	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.065000	0.666667	
mm_124066.1	chr14	78536707	78536907	-	1	NA	NA	NA	53	NM_001164503	219181	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	0.155000	0.776119	
mm_117029.1	chr13	58274006	58274206	-	1	NA	NA	NA	82	NM_019832	56278	Mm.296625	NM_019832	ENSMUSG00000021552	Gkap1	42kDa|4933400B15Rik|D13Ertd340e|Gkap42	G kinase anchoring protein 1	protein-coding	0.180000	0.820896	
mm_95158.1	chr11	35889015	35889215	+	1	NA	NA	NA	-54587	NM_025936	104458	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.005000	0.547264	
mm_147399.1	chr18	44555795	44555995	-	1	NA	NA	NA	-105770	NR_026853	626275	Mm.427116	NR_026853	ENSMUSG00000097610	A930012L18Rik	-	RIKEN cDNA A930012L18 gene	ncRNA	0.000000	0.477612	
mm_142755.1	chr17	48738644	48738844	-	1	NA	NA	NA	-193838	NM_027452	70530	Mm.133607	NM_027452	ENSMUSG00000040490	Lrfn2	5730420O05Rik|SALM1|mKIAA1246	leucine rich repeat and fibronectin type III domain containing 2	protein-coding	0.040000	0.512438	
mm_144411.1	chr18	20961396	20961596	+	1	NA	NA	NA	16871	NM_026301	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik	ring finger protein 125	protein-coding	0.125000	0.721393	
mm_128735.1	chr15	64285192	64285392	-	1	NA	NA	NA	27381	NM_001276462	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.015000	0.412935	
mm_50955.1	chr6	58831789	58831989	+	1	NA	NA	NA	-1811	NM_028705	73998	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0.115000	0.736318	
mm_118508.1	chr14	14012560	14012760	+	1	NA	NA	NA	169	NM_139227	246103	Mm.133625	NM_139227	ENSMUSG00000021738	Atxn7	A430107N12Rik|AI627028|Sca7|ataxin-7	ataxin 7	protein-coding	0.135000	0.761194	
mm_97569.1	chr11	78937793	78937993	+	1	NA	NA	NA	12602	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.020000	0.547264	
mm_57302.1	chr6	124636777	124636977	-	1	NA	NA	NA	-792	NM_173864	317677	Mm.483270	NM_173864	ENSMUSG00000079343	C1s2	C1sb|EG317677|Gm5077	complement component 1, s subcomponent 2	protein-coding	0.000000	0.467662	-35(ATCTTTAAAAAG,-,0.00),-33(CTTTAAAAAGCA,+,0.00)
mm_9323.1	chr1	171770842	171771042	-	1	NA	NA	NA	3810	NM_013730	27218	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	0.015000	0.393035	
mm_112756.1	chr13	19343351	19343551	+	1	NA	NA	NA	52362	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.393035	
mm_74549.1	chr8	10740914	10741114	-	1	NA	NA	NA	141440	NR_040705	320014	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.015000	0.497512	-41(TGTCTTAAAAGG,-,0.00),-40(GTCTTAAAAGGC,+,0.00)
mm_59030.1	chr7	19304209	19304409	+	1	NA	NA	NA	5736	NM_008036	14282	Mm.248335	NM_008036	ENSMUSG00000003545	Fosb	-	FBJ osteosarcoma oncogene B	protein-coding	0.030000	0.542289	
mm_61045.1	chr7	49778327	49778527	+	1	NA	NA	NA	69	NM_133740	71974	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	0.170000	0.761194	
mm_136988.1	chr17	17374171	17374371	+	1	NA	NA	NA	-61	NM_025934	67045	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2 (yeast)	protein-coding	0.045000	0.477612	
mm_54127.1	chr6	18514684	18514884	-	1	NA	NA	NA	41	NM_080285	30785	Mm.224189	NM_080285	ENSMUSG00000000416	Cttnbp2	3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758	cortactin binding protein 2	protein-coding	0.150000	0.741294	
mm_162062.1	chrX	9062921	9063121	+	1	NA	NA	NA	-69	NM_001038697	434729	Mm.386954	NM_001038697	ENSMUSG00000072249	Fthl17f	EG434729|Fthl17L5|Gm5635	ferritin, heavy polypeptide-like 17, member F	protein-coding	0.040000	0.572139	
mm_97140.1	chr11	75206730	75206930	+	1	NA	NA	NA	12837	NM_177708	237847	Mm.82661	NM_177708	ENSMUSG00000045287	Rtn4rl1	Ngr3|Ngrh2|Ngrl2	reticulon 4 receptor-like 1	protein-coding	0.010000	0.383085	
mm_115397.1	chr13	113794525	113794725	+	1	NA	NA	NA	117	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.085000	0.577114	
mm_58330.1	chr6	146577678	146577878	-	1	NA	NA	NA	57	NM_138757	71177	Mm.271774	NM_138757	ENSMUSG00000040250	Asun	4933424B01Rik|Spata30	asunder, spermatogenesis regulator	protein-coding	0.080000	0.671642	
mm_4276.1	chr1	171580432	171580632	+	1	NA	NA	NA	21339	NM_018729	18106	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0.015000	0.358209	
mm_107454.1	chr12	37108481	37108681	+	1	NA	NA	NA	35	NM_008584	17286	Mm.341398	NM_008584	ENSMUSG00000036144	Meox2	AI528662|Gax|Mox-2|Mox2	mesenchyme homeobox 2	protein-coding	0.015000	0.527363	
mm_34149.1	chr4	139363507	139363707	+	1	NA	NA	NA	11020	NM_146157	230866	Mm.394288	NM_146157	ENSMUSG00000078517	Emc1	2700016F22Rik	ER membrane protein complex subunit 1	protein-coding	0.010000	0.527363	
mm_157895.1	chrX	77511714	77511914	-	1	NA	NA	NA	587	NM_020601	21372	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	0.050000	0.651741	
mm_113170.1	chr13	24813414	24813614	+	1	NA	NA	NA	11857	NM_024473	79555	Mm.266668	NM_024473	ENSMUSG00000019132	BC005537	8030460C05Rik|C78201	cDNA sequence BC005537	protein-coding	0.010000	0.348259	-74(GCATTTATACAC,+,0.00)
mm_4021.1	chr1	165722923	165723123	+	1	NA	NA	NA	-14929	NM_001038846	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.005000	0.482587	
mm_31100.1	chr4	41760376	41760576	+	1	NA	NA	NA	33	NM_001172054	16157	Mm.193451	NM_010549	ENSMUSG00000073889	Il11ra1	AI314697|GP130|Il-11ra|Il11ra|Il11ra2|NR1	interleukin 11 receptor, alpha chain 1	protein-coding	0.055000	0.686567	
mm_55117.1	chr6	50394012	50394212	-	1	NA	NA	NA	-11275	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.015000	0.497512	
mm_74921.1	chr8	25589355	25589555	-	1	NA	NA	NA	8032	NM_173012	270035	Mm.268349	NM_173012	ENSMUSG00000037363	Letm2	6030453H13|D030041N04Rik	leucine zipper-EF-hand containing transmembrane protein 2	protein-coding	0.005000	0.412935	
mm_56797.1	chr6	116655385	116655585	-	1	NA	NA	NA	4801	NM_001166580	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.020000	0.497512	
mm_84654.1	chr9	71630993	71631193	-	1	NA	NA	NA	-38733	NM_001033208	102371	Mm.27585	NM_001033208	ENSMUSG00000041361	Myzap	AA407270|AV006038|Gcom1|Gm640|Grinl1a7|Myozap	myocardial zonula adherens protein	protein-coding	0.005000	0.567164	
mm_57892.1	chr6	131368416	131368616	-	1	NA	NA	NA	19934	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.060000	0.577114	
mm_159028.1	chr1	173982761	173982961	-	1	NA	NA	NA	-17	NM_011940	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.015000	0.373134	
mm_105500.1	chr11	106160393	106160593	-	1	NA	NA	NA	-351	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.080000	0.601990	
mm_77308.1	chr8	117671412	117671612	-	1	NA	NA	NA	3	NM_028725	74032	Mm.296302	NM_028725	ENSMUSG00000034308	Sdr42e1	4632417N05Rik|AI117603	short chain dehydrogenase/reductase family 42E, member 1	protein-coding	0.010000	0.412935	
mm_39923.1	chr5	31569281	31569481	+	1	NA	NA	NA	2016	NR_102275	100740	Mm.23370	NR_102275		AI839979	-	expressed sequence AI839979	ncRNA	0.000000	0.442786	
mm_53086.1	chr6	124996972	124997172	+	1	NA	NA	NA	352	NM_175696	319352	Mm.295327	NM_175696	ENSMUSG00000030329	Pianp	AI255183|AU067746|C530028O21Rik|Panp	PILR alpha associated neural protein	protein-coding	0.060000	0.666667	
mm_102028.1	chr11	51688409	51688609	-	1	NA	NA	NA	125	NM_025319	66050	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	0.035000	0.547264	
mm_153142.1	chr19	34247946	34248146	-	1	NA	NA	NA	7327	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.000000	0.298507	
mm_106682.1	chr12	3235406	3235606	+	1	NA	NA	NA	-285	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.090000	0.552239	
mm_152670.1	chr19	14597911	14598111	-	1	NA	NA	NA	172	NM_001302950	21888	Mm.103638	NM_011600	ENSMUSG00000024642	Tle4	5730411M05Rik|AA792082|Bce-1|Bce1|ESTM13|ESTM14|Grg4|X83332|X83333|grg-4	transducin-like enhancer of split 4	protein-coding	0.055000	0.457711	74(TTTTAAAAAGCC,+,0.00)
mm_52912.1	chr6	122826536	122826736	+	1	NA	NA	NA	-4741	NR_106090	102465710		NR_106090	ENSMUSG00000106580	Mir7231	mmu-mir-7231	microRNA 7231	ncRNA	0.025000	0.572139	32(GAGCTTTAAAGG,-,0.00),34(GCTTTAAAGGTG,+,0.00)
mm_94389.1	chr11	5525165	5525365	+	1	NA	NA	NA	4624	NM_001271730	22433	Mm.469937	NM_013842	ENSMUSG00000020484	Xbp1	D11Ertd39e|TREB-5|TREB5|XBP-1	X-box binding protein 1	protein-coding	0.005000	0.472637	
mm_128043.1	chr15	25390533	25390733	-	1	NA	NA	NA	23131	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.010000	0.348259	
mm_105641.1	chr11	107015578	107015778	-	1	NA	NA	NA	-12545	NM_001163473	69066	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	OTTMUSG00000003581	RIKEN cDNA 1810010H24 gene	protein-coding	0.020000	0.532338	
mm_171554.1	chr4	147131969	147132169	+	1	NA	NA	NA	-43797	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152|OTTMUSG00000010671	zinc finger protein 982	protein-coding	0.040000	0.517413	
mm_66838.1	chr7	48880941	48881141	-	1	NA	NA	NA	0	NM_001013368	108961	Mm.240566	NM_001013368	ENSMUSG00000046179	E2f8	4432406C08Rik|AA410048	E2F transcription factor 8	protein-coding	0.105000	0.691542	
mm_66691.1	chr7	45896565	45896765	-	1	NA	NA	NA	46	NM_001291064	58867	Mm.214217	NM_021482	ENSMUSG00000040231	Syngr4	1700016O14Rik	synaptogyrin 4	protein-coding	0.035000	0.592040	
mm_11079.1	chr2	27710178	27710378	+	1	NA	NA	NA	-305	NM_001290482	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.010000	0.552239	
mm_138053.1	chr17	33926323	33926523	+	1	NA	NA	NA	-3471	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.050000	0.611940	
mm_39888.1	chr5	31116608	31116808	+	1	NA	NA	NA	96	NM_021447	58522	Mm.143796	NM_021447	ENSMUSG00000062077	Trim54	4930486E09Rik|4930566I02Rik|MURF|MURF-3|MuRF3|Rnf30	tripartite motif-containing 54	protein-coding	0.010000	0.537313	
mm_7188.1	chr1	92902772	92902972	-	1	NA	NA	NA	34	NM_172850	241158	Mm.108280	NM_172850	ENSMUSG00000034212	Ankmy1	4930483I10Rik|ZMYND13	ankyrin repeat and MYND domain containing 1	protein-coding	0.045000	0.532338	
mm_160683.1	chr10	18056027	18056227	+	1	NA	NA	NA	187	NM_001111065	19707	Mm.4479	NM_009048	ENSMUSG00000019854	Reps1	BB161292	RalBP1 associated Eps domain containing protein	protein-coding	0.130000	0.761194	
mm_156761.1	chrX	160502622	160502822	+	1	NA	NA	NA	288	NM_001177878	110094	Mm.350712	NM_172783	ENSMUSG00000031295	Phka2	6330505C01Rik|D330034O08|Phk	phosphorylase kinase alpha 2	protein-coding	0.060000	0.587065	
mm_158214.1	chrX	105875528	105875728	-	1	NA	NA	NA	53744	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.010000	0.497512	
mm_8107.1	chr1	135851283	135851483	-	1	NA	NA	NA	10522	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.030000	0.547264	
mm_158550.1	chrX	145505094	145505294	-	1	NA	NA	NA	-17555	NM_153319	27494	Mm.100068	NM_153319	ENSMUSG00000041688	Amot	CAG-2|D0Kist1|Sii6	angiomotin	protein-coding	0.050000	0.671642	
mm_38429.1	chr4	139310555	139310755	-	1	NA	NA	NA	45	NM_145384	212555	Mm.45131	NM_145384	ENSMUSG00000028744	Pqlc2	BC019216	PQ loop repeat containing 2	protein-coding	0.090000	0.676617	
mm_123993.1	chr14	75761294	75761494	-	1	NA	NA	NA	-6901	NM_177381	338337	Mm.86507	NM_177381	ENSMUSG00000034893	Cog3	E430004N23	component of oligomeric golgi complex 3	protein-coding	0.020000	0.447761	
mm_170454.1	chr18	85698171	85698371	-	1	NA	NA	NA	-696681	NM_144946	246317	Mm.329578	NM_144946	ENSMUSG00000050321	Neto1	AI851453|Btcl1|C130005O10Rik	neuropilin (NRP) and tolloid (TLL)-like 1	protein-coding	0.035000	0.487562	
mm_116200.1	chr13	32214014	32214214	-	1	NA	NA	NA	124430	NM_146041	218138	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	0.000000	0.373134	
mm_93053.1	chr10	88583658	88583858	-	1	NA	NA	NA	21394	NM_001252372	109272	Mm.147208	NM_175418	ENSMUSG00000020061	Mybpc1	8030451F13Rik	myosin binding protein C, slow-type	protein-coding	0.000000	0.412935	
mm_96932.1	chr11	70519093	70519293	+	1	NA	NA	NA	-16	NM_146020	216871	Mm.22551	NM_146020	ENSMUSG00000046811	Gltpd2	C730027E14Rik	glycolipid transfer protein domain containing 2	protein-coding	0.030000	0.547264	
mm_79874.1	chr9	65185660	65185860	+	1	NA	NA	NA	-28930	NM_177460	214424	Mm.31129	NM_177460	ENSMUSG00000032392	Parp16	ARTD15|BC055447|C79952|PARP-16	poly (ADP-ribose) polymerase family, member 16	protein-coding	0.020000	0.562189	51(GCCCCTTAATGG,-,0.00),53(CCCTTAATGGGG,+,0.00)
mm_55781.1	chr6	81965572	81965772	-	1	NA	NA	NA	277	NM_026490	56284	Mm.276293	NM_026490	ENSMUSG00000030045	Mrpl19	9030416F12Rik|9130412E02Rik|D6Ertd157e|MRP-L15|RLX1|Rpml15	mitochondrial ribosomal protein L19	protein-coding	0.095000	0.616915	
mm_80289.1	chr9	73065773	73065973	+	1	NA	NA	NA	1725	NM_001301232	11891	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	0.020000	0.467662	
mm_124829.1	chr15	9140452	9140652	+	1	NA	NA	NA	-18	NM_177178	320506	Mm.259886	NM_177178	ENSMUSG00000039704	Lmbrd2	9930036E21Rik	LMBR1 domain containing 2	protein-coding	0.070000	0.641791	
mm_68714.1	chr7	119895625	119895825	-	1	NA	NA	NA	20	NM_001163703	233805	Mm.31539	NM_173408	ENSMUSG00000048787	Dcun1d3	1700020A13Rik|BC030335	DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae)	protein-coding	0.105000	0.716418	
mm_159378.1	chr3	89454503	89454703	+	1	NA	NA	NA	62	NM_001310640	68603	Mm.34242	NM_026784	ENSMUSG00000027952	Pmvk	1110011E12Rik|2900002L22Rik|AV001327|PMK|PMKA|PMKASE	phosphomevalonate kinase	protein-coding	0.030000	0.572139	
mm_80137.1	chr9	70709940	70710140	+	1	NA	NA	NA	31058	NM_007399	11487	Mm.3037	NM_007399	ENSMUSG00000054693	Adam10	1700031C13Rik|MADM|kuz|kuzbanian	a disintegrin and metallopeptidase domain 10	protein-coding	0.000000	0.338308	
mm_101592.1	chr11	34682043	34682243	-	1	NA	NA	NA	101762	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.015000	0.338308	
mm_92563.1	chr10	79874117	79874317	-	1	NA	NA	NA	417	NM_181681	216152	Mm.29678	NM_181681	ENSMUSG00000035835	Plppr3	Lppr3|Prg2	phospholipid phosphatase related 3	protein-coding	0.055000	0.656716	
mm_94395.1	chr11	5569585	5569785	+	1	NA	NA	NA	1	NM_023816	76389	Mm.67300	NM_023816	ENSMUSG00000020481	Ankrd36	1700008J08Rik|1700012M14Rik|Ankrd48	ankyrin repeat domain 36	protein-coding	0.035000	0.582090	
mm_51525.1	chr6	83179602	83179802	+	1	NA	NA	NA	113	NM_007835	13191	Mm.6919	NM_007835	ENSMUSG00000031865	Dctn1	AL022633|DAP-150|DP-150|Glued|p150|p150-glued|p150<glued>	dynactin 1	protein-coding	0.035000	0.616915	
mm_147245.1	chr18	38375452	38375652	-	1	NA	NA	NA	-36559	NM_011937	26384	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.015000	0.562189	
mm_145186.1	chr18	49755642	49755842	+	1	NA	NA	NA	-141	NM_001170960	68857	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0.040000	0.552239	89(GTATTTAAAAGA,-,0.00)
mm_76074.1	chr8	78813143	78813343	-	1	NA	NA	NA	7909	NM_001191004	78651	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.015000	0.517413	
mm_125686.1	chr15	66801568	66801768	+	1	NA	NA	NA	30161	NM_001029841	20491	Mm.7601	NM_009192	ENSMUSG00000022372	Sla	Slap|Slap-1	src-like adaptor	protein-coding	0.000000	0.447761	-34(CTTCTTAAAAGG,-,0.00),-32(TCTTAAAAGGGG,+,0.00)
mm_85119.1	chr9	95459997	95460197	-	1	NA	NA	NA	51899	NM_026476	67958	Mm.292742	NM_026476	ENSMUSG00000032407	U2surp	2610101N10Rik|AU023006|Sr140	U2 snRNP-associated SURP domain containing	protein-coding	0.000000	0.353234	-75(GGCTCTTTATGC,-,0.00)
mm_127533.1	chr15	102102851	102103051	+	1	NA	NA	NA	-37	NM_153533	209039	Mm.29389	NM_153533	ENSMUSG00000037003	Tns2	C1-ten|Tenc1|nep|nph	tensin 2	protein-coding	0.020000	0.671642	
mm_97969.1	chr11	83850772	83850972	+	1	NA	NA	NA	3	NM_009330	21410	Mm.7226	NM_009330	ENSMUSG00000020679	Hnf1b	HNF-1-beta|HNF-1B|HNF-1Beta|Hnf1beta|LFB3|Tcf-2|Tcf2|vHNF1	HNF1 homeobox B	protein-coding	0.015000	0.512438	-34(TCTTATATGGCC,+,0.00)
mm_7477.1	chr1	120504727	120504927	-	1	NA	NA	NA	257	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.005000	0.482587	
mm_89132.1	chr10	85115890	85116090	+	1	NA	NA	NA	12037	NM_028832	74238	Mm.255401	NM_028832	ENSMUSG00000049038	Mterf2	1700007D05Rik|Mterfd3	mitochondrial transcription termination factor 2	protein-coding	0.010000	0.343284	
mm_134856.1	chr16	28422361	28422561	-	1	NA	NA	NA	23614	NM_183064	14167	Mm.7996	NM_010199	ENSMUSG00000022523	Fgf12	AV114868|B230343J05Rik|FGF-12|FHF-1|Fhf1	fibroblast growth factor 12	protein-coding	0.000000	0.303483	-82(CCTTTTAAACAC,+,0.00)
mm_52516.1	chr6	115421901	115422101	+	1	NA	NA	NA	-65	NM_011146	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.005000	0.393035	
mm_152083.1	chr19	6870649	6870849	-	1	NA	NA	NA	-12538	NM_001081291	78317	Mm.329596	NM_198008	ENSMUSG00000047810	Ccdc88b	2610041P08Rik|Ccdc88	coiled-coil domain containing 88B	protein-coding	0.010000	0.437811	
mm_65699.1	chr7	28377097	28377297	-	1	NA	NA	NA	2031	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.005000	0.457711	
mm_59049.1	chr7	19368428	19368628	+	1	NA	NA	NA	7312	NM_001010836	333654	Mm.333640	NM_001010836	ENSMUSG00000040734	Ppp1r13l	AV260376|IASPP|Nkip1|wa3	protein phosphatase 1, regulatory (inhibitor) subunit 13 like	protein-coding	0.050000	0.606965	
mm_109162.1	chr12	108189044	108189244	+	1	NA	NA	NA	9406	NM_009832	12454	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	0.020000	0.427861	
mm_170247.1	chr1	79380733	79380933	+	1	NA	NA	NA	59257	NM_009129	20254	Mm.5038	NM_009129	ENSMUSG00000050711	Scg2	Chgc|SgII	secretogranin II	protein-coding	0.045000	0.512438	
mm_38707.1	chr4	145215462	145215662	-	1	NA	NA	NA	-20557	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.000000	0.497512	
mm_138144.1	chr17	34204389	34204589	+	1	NA	NA	NA	10	NM_011530	21355	Mm.14814	NM_011530	ENSMUSG00000024339	Tap2	ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas	transporter 2, ATP-binding cassette, sub-family B (MDR/TAP)	protein-coding	0.100000	0.656716	
mm_64070.1	chr7	140890746	140890946	+	1	NA	NA	NA	8452	NM_011875	23997	Mm.29760	NM_011875	ENSMUSG00000025487	Psmd13	S11	proteasome (prosome, macropain) 26S subunit, non-ATPase, 13	protein-coding	0.080000	0.606965	
mm_126964.1	chr15	92597013	92597213	+	1	NA	NA	NA	4	NM_001164594	239618	Mm.309826	NM_001164593	ENSMUSG00000036218	Pdzrn4	1110017D07Rik|LNX4|SAMCAP3L|mKIAA3027	PDZ domain containing RING finger 4	protein-coding	0.035000	0.482587	
mm_61505.1	chr7	78578472	78578672	+	1	NA	NA	NA	-734	NM_182809	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	0.115000	0.751244	
mm_160036.1	chr6	132738115	132738315	-	1	NA	NA	NA	-229	NM_207020	353325	Mm.377892	NM_207020	ENSMUSG00000071149	Tas2r115	T2R15|Tas2r15|mGR15|mt2r49	taste receptor, type 2, member 115	protein-coding	0.005000	0.368159	
mm_13463.1	chr2	105675519	105675719	+	1	NA	NA	NA	-125	NM_001244200	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.035000	0.562189	
mm_145778.1	chr18	65072173	65072373	+	1	NA	NA	NA	48746	NM_031881	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.030000	0.492537	
mm_83127.1	chr9	40425580	40425780	-	1	NA	NA	NA	30084	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.005000	0.378109	
mm_132274.1	chr16	32916193	32916393	+	1	NA	NA	NA	2193	NM_001310672	70144	Mm.491178	NM_001081255	ENSMUSG00000022801	Lrch3	2210409B11Rik|AW215594|Gm1742	leucine-rich repeats and calponin homology (CH) domain containing 3	protein-coding	0.000000	0.333333	
mm_95651.1	chr11	53724492	53724692	+	1	NA	NA	NA	3798	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.010000	0.472637	
mm_98246.1	chr11	88203927	88204127	+	1	NA	NA	NA	-361	NM_024174	64656	Mm.168680	NM_024174	ENSMUSG00000023723	Mrps23	D11Bwg1153e|MRP-S23|Rpms23|S23mt	mitochondrial ribosomal protein S23	protein-coding	0.020000	0.497512	
mm_112470.1	chr13	5868352	5868552	+	1	NA	NA	NA	6963	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.020000	0.388060	
mm_160418.1	chr8	83976650	83976850	+	1	NA	NA	NA	-133	NM_001277898	18747	Mm.19111	NM_008854	ENSMUSG00000005469	Prkaca	PKCD|Pkaca	protein kinase, cAMP dependent, catalytic, alpha	protein-coding	0.010000	0.512438	
mm_35786.1	chr4	46469869	46470069	-	1	NA	NA	NA	19043	NM_130889	67628	Mm.263913	NM_130889	ENSMUSG00000028333	Anp32b	2410015B15Rik|PAL31|PHAPI2a|Ssp29	acidic (leucine-rich) nuclear phosphoprotein 32 family, member B	protein-coding	0.010000	0.452736	
mm_72078.1	chr8	71569573	71569773	+	1	NA	NA	NA	746	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.085000	0.646766	
mm_162043.1	chr19	59169781	59169981	-	1	NA	NA	NA	148	NM_009501	22326	Mm.23801	NM_009501	ENSMUSG00000006270	Vax1	-	ventral anterior homeobox 1	protein-coding	0.090000	0.611940	
mm_146845.1	chr18	23867470	23867670	-	1	NA	NA	NA	63600	NM_153058	212307	Mm.132237	NM_153058	ENSMUSG00000024277	Mapre2	AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1	microtubule-associated protein, RP/EB family, member 2	protein-coding	0.015000	0.467662	
mm_156985.1	chrX	7319174	7319374	-	1	NA	NA	NA	84	NM_001243762	12728	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	0.100000	0.701493	
mm_76002.1	chr8	72487022	72487222	-	1	NA	NA	NA	5492	NM_177766	270066	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	0.000000	0.487562	
mm_44046.1	chr5	147860508	147860708	+	1	NA	NA	NA	-20	NM_025624	66537	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.090000	0.656716	
mm_127130.1	chr15	98160573	98160773	+	1	NA	NA	NA	4905	NM_001170711	78541	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0.035000	0.472637	
mm_72232.1	chr8	74873112	74873312	+	1	NA	NA	NA	38	NM_001294278	71597	Mm.158735	NM_027837	ENSMUSG00000031621	Isx	9130012O13Rik|Pix-1	intestine specific homeobox	protein-coding	0.005000	0.552239	
mm_123348.1	chr14	63141766	63141966	-	1	NA	NA	NA	19404	NM_007798	13030	Mm.236553	NM_007798	ENSMUSG00000021939	Ctsb	CB	cathepsin B	protein-coding	0.010000	0.567164	
mm_32285.1	chr4	102991192	102991392	+	1	NA	NA	NA	-503	NM_001163768	67344	Mm.111346	NM_026100	ENSMUSG00000028523	Tctex1d1	1700055O19Rik	Tctex1 domain containing 1	protein-coding	0.000000	0.407960	71(GACTTTTAAAAA,-,0.00)
mm_30354.1	chr3	151762408	151762608	-	1	NA	NA	NA	383	NM_031367	15061	Mm.219544	NM_031367	ENSMUSG00000039146	Ifi44l	H-28|H28|H28-1|NS1178	interferon-induced protein 44 like	protein-coding	0.000000	0.467662	31(GGTTTTTAAAGG,-,0.00),32(GTTTTTAAAGGG,+,0.00),32(GTTTTTAAAGGG,-,0.00)
mm_60537.1	chr7	44480309	44480509	+	1	NA	NA	NA	-4108	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.497512	
mm_105594.1	chr11	106736403	106736603	-	1	NA	NA	NA	-14723	NM_001271375	380732	Mm.343952	NM_001033435	ENSMUSG00000040528	Milr1	Allergin-1|Gm885|Mca32	mast cell immunoglobulin like receptor 1	protein-coding	0.010000	0.437811	-64(CCCTTTAAAAAG,+,0.00),-64(CCCTTTAAAAAG,-,0.00),-63(CCTTTAAAAAGA,+,0.00),-62(CTTTAAAAAGAG,+,0.00)
mm_169217.1	chr13	66706340	66706540	+	1	NA	NA	NA	198910	NM_026219	67530	Mm.379136	NM_026219	ENSMUSG00000021520	Uqcrb	2210415M14Rik|QP-C|QPC|UQBC|UQBP|UQPC	ubiquinol-cytochrome c reductase binding protein	protein-coding	0.005000	0.512438	
mm_17035.1	chr2	20669192	20669392	-	1	NA	NA	NA	149779	NM_001177631	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.015000	0.452736	-54(CTGTATAAAAAG,-,0.00)
mm_158463.1	chrX	140642160	140642360	-	1	NA	NA	NA	-35768	NM_011845	23947	Mm.131097	NM_011845	ENSMUSG00000000266	Mid2	FXY2|Trim1	midline 2	protein-coding	0.015000	0.477612	
mm_128656.1	chr15	59794857	59795057	-	1	NA	NA	NA	2	NR_045076	100503021	Mm.402924	NR_045076		Gm19510	-	predicted gene, 19510	ncRNA	0.025000	0.512438	
mm_160961.1	chr11	99285148	99285348	-	1	NA	NA	NA	-10	NM_029393	75706	Mm.46378	NM_029393	ENSMUSG00000020913	Krt24	2310058N18Rik|2310075C18Rik	keratin 24	protein-coding	0.020000	0.517413	-47(GTGTATATAAGG,-,0.00)
mm_11752.1	chr2	38472101	38472301	+	1	NA	NA	NA	-39496	NM_021606	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.005000	0.547264	
mm_109102.1	chr12	105020028	105020228	+	1	NA	NA	NA	-10319	NM_172500	212073	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.020000	0.582090	
mm_87037.1	chr10	28668550	28668750	+	1	NA	NA	NA	290	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.010000	0.447761	
mm_122689.1	chr14	52020564	52020764	-	1	NA	NA	NA	69	NM_001253696	69890	Mm.475652	NM_027248	ENSMUSG00000049295	Zfp219	2010302A17Rik	zinc finger protein 219	protein-coding	0.025000	0.527363	
mm_118142.1	chr13	105054401	105054601	-	1	NA	NA	NA	429	NM_029879	52882	Mm.100348	NM_029879	ENSMUSG00000021719	Rgs7bp	A930030I01Rik|AI842293|D13Bwg1146e|R7bp	regulator of G-protein signalling 7 binding protein	protein-coding	0.105000	0.666667	
mm_86796.1	chr10	20267124	20267324	+	1	NA	NA	NA	30464	NR_105840	102466647		NR_105840	ENSMUSG00000098887	Mir6413	Gm27432|mmu-mir-6413	microRNA 6413	ncRNA	0.025000	0.587065	
mm_3975.1	chr1	164219915	164220115	+	1	NA	NA	NA	-29031	NM_054087	116914	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA	solute carrier family 19 (thiamine transporter), member 2	protein-coding	0.000000	0.313433	-65(TTCTTTTAAAAG,-,0.00),-64(TCTTTTAAAAGC,+,0.00),-64(TCTTTTAAAAGC,-,0.00),-63(CTTTTAAAAGCA,+,0.00)
mm_95684.1	chr11	54261659	54261859	+	1	NA	NA	NA	5520	NM_010556	16187	Mm.983	NM_010556	ENSMUSG00000018914	Il3	BPA|Csfmu|HCGF|Il-3|MCGF|PSF	interleukin 3	protein-coding	0.000000	0.522388	
mm_160557.1	chr9	49426853	49427053	-	1	NA	NA	NA	68	NM_172922	244859	Mm.119994	NM_172922	ENSMUSG00000032257	Ankk1	9930020N01Rik	ankyrin repeat and kinase domain containing 1	protein-coding	0.030000	0.606965	
mm_31648.1	chr4	59626121	59626321	+	1	NA	NA	NA	10	NM_153158	230259	Mm.45688	NM_153158	ENSMUSG00000045071	E130308A19Rik	-	RIKEN cDNA E130308A19 gene	protein-coding	0.165000	0.835821	
mm_48325.1	chr5	138995532	138995732	-	1	NA	NA	NA	-679	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.115000	0.766169	
mm_77821.1	chr9	3372424	3372624	+	1	NA	NA	NA	-31561	NM_027545	244672	Mm.245482	NM_027545	ENSMUSG00000025898	Cwf19l2	3230401L03Rik|9030209E10	CWF19-like 2, cell cycle control (S. pombe)	protein-coding	0.020000	0.452736	
mm_139519.1	chr17	56609801	56610001	+	1	NA	NA	NA	-130	NM_153152	224904	Mm.34002	NM_153152	ENSMUSG00000049760	2410015M20Rik	Mic13|QIL1|sr104	RIKEN cDNA 2410015M20 gene	protein-coding	0.075000	0.582090	
mm_115161.1	chr13	107469722	107469922	+	1	NA	NA	NA	0	NR_045083	105120	Mm.417700	NR_045083		AI197445	-	expressed sequence AI197445	ncRNA	0.025000	0.606965	
mm_75688.1	chr8	68205645	68205845	-	1	NA	NA	NA	-70783	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.025000	0.467662	
mm_115043.1	chr13	99641888	99642088	+	1	NA	NA	NA	-125386	NM_008634	17755	Mm.4173	NM_008634	ENSMUSG00000052727	Map1b	A230055D22|AI843217|LC1|MAP5|Mtap-5|Mtap1b|Mtap5	microtubule-associated protein 1B	protein-coding	0.040000	0.592040	
mm_109230.1	chr12	108836291	108836491	+	1	NA	NA	NA	-515	NM_181328	214663	Mm.266264	NM_181328	ENSMUSG00000021265	Slc25a29	C030003J19Rik|CACL|mCACL	solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29	protein-coding	0.045000	0.572139	
mm_137941.1	chr17	32685541	32685741	+	1	NA	NA	NA	10	NM_001346538	106648	Mm.26539	NM_134127	ENSMUSG00000073424	Cyp4f15	AI787289|Cyp4f-15	cytochrome P450, family 4, subfamily f, polypeptide 15	protein-coding	0.005000	0.512438	
mm_68620.1	chr7	117486409	117486609	-	1	NA	NA	NA	105530	NM_175645	233781	Mm.461427	NM_175645	ENSMUSG00000030657	Xylt1	8030490L12	xylosyltransferase 1	protein-coding	0.010000	0.402985	
mm_147118.1	chr18	35740017	35740217	-	1	NA	NA	NA	437	NM_001289592	72512	Mm.45995	NM_028261	ENSMUSG00000024349	Tmem173	2610307O08Rik|ERIS|MPYS|Mita|STING	transmembrane protein 173	protein-coding	0.010000	0.507463	
mm_148528.1	chr19	4510444	4510644	+	1	NA	NA	NA	72	NM_001162946	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.080000	0.661692	
mm_41797.1	chr5	103753612	103753812	+	1	NA	NA	NA	-450	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.055000	0.587065	
mm_130093.1	chr15	89424673	89424873	-	1	NA	NA	NA	1089	NM_009948	12895	Mm.227738	NM_009948	ENSMUSG00000078937	Cpt1b	Cpt1|Cpt1-m|Cpti|Cpti-m|M-cpti	carnitine palmitoyltransferase 1b, muscle	protein-coding	0.010000	0.537313	
mm_36577.1	chr4	88031616	88031816	-	1	NA	NA	NA	1691	NM_027326	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.055000	0.587065	-98(CCTTTTATGTGC,+,0.00)
mm_137004.1	chr17	17624618	17624818	+	1	NA	NA	NA	-229	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.085000	0.671642	
mm_145396.1	chr18	57142689	57142889	+	1	NA	NA	NA	9699	NM_001001979	70417	Mm.297863	NM_001001979	ENSMUSG00000024593	Megf10	3000002B06Rik|Gm331	multiple EGF-like-domains 10	protein-coding	0.005000	0.512438	
mm_2583.1	chr1	118627900	118628100	+	1	NA	NA	NA	55	NM_023755	81879	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.085000	0.656716	-86(GCCTATAAAAGG,-,0.00)
mm_60665.1	chr7	45016498	45016698	+	1	NA	NA	NA	-349	NM_001008422	233208	Mm.28298	NM_001008422	ENSMUSG00000038406	Scaf1	AI480556|SR-A1	SR-related CTD-associated factor 1	protein-coding	0.030000	0.432836	
mm_88157.1	chr10	69630693	69630893	+	1	NA	NA	NA	97085	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.015000	0.373134	63(GTGTTTTAAAAC,-,0.00)
mm_91210.1	chr10	21341930	21342130	-	1	NA	NA	NA	25	NR_045352	73990	Mm.399240	NR_045352		4930455C13Rik	-	RIKEN cDNA 4930455C13 gene	ncRNA	0.045000	0.567164	
mm_32503.1	chr4	108460731	108460931	+	1	NA	NA	NA	1405	NM_175472	230594	Mm.25181	NM_175472	ENSMUSG00000034610	Zcchc11	6030404K05Rik|9230115F04Rik|PPAPD3|mKIAA0191	zinc finger, CCHC domain containing 11	protein-coding	0.060000	0.527363	
mm_6978.1	chr1	86353735	86353935	-	1	NA	NA	NA	-1708	NR_106184	102465895		NR_106184	ENSMUSG00000104627	Gm24148	Mir3535|mir-3535|mmu-mir-3535	predicted gene, 24148	ncRNA	0.010000	0.353234	
mm_106039.1	chr11	116079139	116079339	-	1	NA	NA	NA	-1278	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.020000	0.587065	
mm_121684.1	chr14	13597009	13597209	-	1	NA	NA	NA	-73767	NM_177624	218739	Mm.39919	NM_177624	ENSMUSG00000044772	Sntn	A430083B19Rik	sentan, cilia apical structure protein	protein-coding	0.000000	0.383085	
mm_112767.1	chr13	19357948	19358148	+	1	NA	NA	NA	37765	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.517413	
mm_80664.1	chr9	90073829	90074029	+	1	NA	NA	NA	19662	NM_001312649	13036	Mm.2277	NM_007801	ENSMUSG00000032359	Ctsh	AL022844	cathepsin H	protein-coding	0.005000	0.517413	
mm_74822.1	chr8	23095410	23095610	-	1	NA	NA	NA	37251	NR_102385	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.025000	0.407960	
mm_61358.1	chr7	68433001	68433201	+	1	NA	NA	NA	15677	NR_046208	71244	Mm.410787	NR_046208	ENSMUSG00000108924	4933436H12Rik	-	RIKEN cDNA 4933436H12 gene	ncRNA	0.005000	0.492537	
mm_38060.1	chr4	134018651	134018851	-	1	NA	NA	NA	65	NM_145833	83557	Mm.302567	NM_145833	ENSMUSG00000050966	Lin28a	AL024421|ENSMUSG00000070700|Gm10299|Lin-28|Lin28|Tex17|lin-28A	lin-28 homolog A (C. elegans)	protein-coding	0.055000	0.636816	
mm_14762.1	chr2	145167773	145167973	+	1	NA	NA	NA	-74738	NM_053195	94249	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.155000	0.776119	
mm_27593.1	chr3	59130657	59130857	-	1	NA	NA	NA	5	NM_001008497	140795	Mm.439021	NM_133200	ENSMUSG00000036381	P2ry14	A330108O13Rik|Gpr105|P2Y14	purinergic receptor P2Y, G-protein coupled, 14	protein-coding	0.020000	0.492537	24(GGGGTTAAAAGG,-,0.00)
mm_11931.1	chr2	52326904	52327104	+	1	NA	NA	NA	11794	NM_010889	17996	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	0.015000	0.437811	
mm_7387.1	chr1	110977259	110977459	-	1	NA	NA	NA	13	NM_001081386	227485	Mm.322070	NM_001081386	ENSMUSG00000047216	Cdh19	-	cadherin 19, type 2	protein-coding	0.015000	0.412935	
mm_128544.1	chr15	55072050	55072250	-	1	NA	NA	NA	2	NM_001081288	319944	Mm.380957	NM_001081288	ENSMUSG00000037343	Taf2	150kDa|4732460C16Rik|AI425886|CIF150|TAF2B|TAFII-150|TAFII150	TATA-box binding protein associated factor 2	protein-coding	0.110000	0.671642	
mm_136052.1	chr16	78576589	78576789	-	1	NA	NA	NA	-1	NM_025967	67102	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.145000	0.771144	
mm_108907.1	chr12	100206001	100206201	+	1	NA	NA	NA	5957	NM_001313934	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm	calmodulin 1	protein-coding	0.025000	0.447761	-56(CCTCTTAAAACC,+,0.00)
mm_132931.1	chr16	49854441	49854641	+	1	NA	NA	NA	-1113	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.010000	0.437811	
mm_58169.1	chr6	142701862	142702062	-	1	NA	NA	NA	312	NM_021041	20928	Mm.35670	NM_011511	ENSMUSG00000030249	Abcc9	AI414027|AI449286|SUR2A|SUR2B|Sur2	ATP-binding cassette, sub-family C (CFTR/MRP), member 9	protein-coding	0.025000	0.437811	
mm_121605.1	chr14	8172895	8173095	-	1	NA	NA	NA	-3	NM_024221	68263	Mm.301527	NM_024221	ENSMUSG00000021748	Pdhb	2610103L06Rik|AL024199|C81408	pyruvate dehydrogenase (lipoamide) beta	protein-coding	0.065000	0.582090	
mm_4987.1	chr1	191718286	191718486	+	1	NA	NA	NA	-9	NM_001134829	226856	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0.170000	0.840796	
mm_47372.1	chr5	122952587	122952787	-	1	NA	NA	NA	36412	NM_001003953	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.020000	0.562189	-35(GGATATTTAAGG,-,0.00)
mm_90066.1	chr10	116309923	116310123	+	1	NA	NA	NA	8649	NM_029928	19263	Mm.37213	NM_029928	ENSMUSG00000020154	Ptprb	3230402H02Rik|C130094E24|Ptpz|Rptpb|VE-PTP|Veptp	protein tyrosine phosphatase, receptor type, B	protein-coding	0.005000	0.308458	
mm_37810.1	chr4	130929416	130929616	-	1	NA	NA	NA	-14869	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.005000	0.572139	
mm_3360.1	chr1	138175533	138175733	+	1	NA	NA	NA	-328	NM_001268286	19264	Mm.391573	NM_011210	ENSMUSG00000026395	Ptprc	B220|CD45R|Cd45|L-CA|Ly-5|Lyt-4|T200|loc	protein tyrosine phosphatase, receptor type, C	protein-coding	0.015000	0.417910	
mm_6183.1	chr1	65109728	65109928	-	1	NA	NA	NA	-6465	NM_007774	12964	Mm.26904	NM_007774	ENSMUSG00000044429	Cryga	Cryg-4|DGcry-4	crystallin, gamma A	protein-coding	0.030000	0.452736	
mm_14448.1	chr2	131103353	131103553	+	1	NA	NA	NA	-16688	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.010000	0.482587	
mm_156686.1	chrX	159372211	159372411	+	1	NA	NA	NA	116	NM_025437	66235	Mm.294623	NM_025437	ENSMUSG00000067194	Eif1ax	1500010B24Rik|AI426898|Eif1ay	eukaryotic translation initiation factor 1A, X-linked	protein-coding	0.105000	0.676617	
mm_99793.1	chr11	107470802	107471002	+	1	NA	NA	NA	-182	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.050000	0.537313	
mm_75589.1	chr8	61591093	61591293	-	1	NA	NA	NA	-24	NM_001293774	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.070000	0.651741	
mm_54732.1	chr6	40929614	40929814	-	1	NA	NA	NA	10843	NM_028550	73481	Mm.333010	NM_028550	ENSMUSG00000029883	1700074P13Rik	AV047902|Tryx5	RIKEN cDNA 1700074P13 gene	protein-coding	0.005000	0.452736	
mm_140002.1	chr17	73037007	73037207	+	1	NA	NA	NA	-70878	NM_001177968	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.015000	0.512438	
mm_12773.1	chr2	79326734	79326934	+	1	NA	NA	NA	71408	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.015000	0.457711	
mm_74075.1	chr8	122443592	122443792	+	1	NA	NA	NA	36	NR_045696	100689703	Mm.271989	NR_045696		9330133O14Rik	-	RIKEN cDNA 9330133O14 gene	ncRNA	0.060000	0.592040	
mm_22194.1	chr2	173276435	173276635	-	1	NA	NA	NA	-2	NM_022995	65112	Mm.73682	NM_022995	ENSMUSG00000038400	Pmepa1	2210418I02Rik|AW455466|Erg1.2|N4wbp4|Stag1|Tmepai	prostate transmembrane protein, androgen induced 1	protein-coding	0.170000	0.771144	
mm_167528.1	chr9	21288625	21288825	+	1	NA	NA	NA	-756	NM_145416	215194	Mm.290690	NM_145416	ENSMUSG00000035047	Kri1	-	KRI1 homolog	protein-coding	0.010000	0.557214	
mm_161325.1	chr14	49960846	49961046	-	1	NA	NA	NA	150	NM_146492	258485	Mm.271405	NM_146492	ENSMUSG00000096254	Olfr724	MOR247-2	olfactory receptor 724	protein-coding	0.005000	0.398010	
mm_165649.1	chr3	83031600	83031800	+	1	NA	NA	NA	5547	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.035000	0.467662	
mm_33770.1	chr4	134468270	134468470	+	1	NA	NA	NA	50	NM_019641	16765	Mm.378957	NM_019641	ENSMUSG00000028832	Stmn1	19k|Lag|Lap18|Op18|P18|P19|Pig|Pp17|Pp18|Pp19|Pr22|Smn	stathmin 1	protein-coding	0.095000	0.696517	
mm_56615.1	chr6	112620696	112620896	-	1	NA	NA	NA	75874	NM_021385	58186	Mm.103812	NM_021385	ENSMUSG00000030254	Rad18	2810024C04Rik|Rad18sc	RAD18 E3 ubiquitin protein ligase	protein-coding	0.020000	0.398010	
mm_159664.1	chr4	152130798	152130998	-	1	NA	NA	NA	-1973	NM_019585	56226	Mm.264215	NM_019585	ENSMUSG00000028943	Espn	je	espin	protein-coding	0.135000	0.776119	
mm_20569.1	chr2	131083758	131083958	-	1	NA	NA	NA	2907	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.030000	0.577114	
mm_61217.1	chr7	64287639	64287839	+	1	NA	NA	NA	69	NM_172742	233315	Mm.214959	NM_172742	ENSMUSG00000030522	Mtmr10	BB128963|C79734	myotubularin related protein 10	protein-coding	0.115000	0.751244	
mm_90725.1	chr10	5185464	5185664	-	1	NA	NA	NA	9143	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.020000	0.457711	
mm_167395.1	chr8	95306466	95306666	-	1	NA	NA	NA	19	NM_145601	333329	Mm.484049	NM_145601	ENSMUSG00000031789	Cngb1	Cngb1b|Garp2|Gm1959	cyclic nucleotide gated channel beta 1	protein-coding	0.025000	0.567164	
mm_19570.1	chr2	101640013	101640213	-	1	NA	NA	NA	9419	NM_009019	19373	Mm.828	NM_009019	ENSMUSG00000061311	Rag1	Rag-1	recombination activating gene 1	protein-coding	0.005000	0.348259	
mm_80049.1	chr9	69289823	69290023	+	1	NA	NA	NA	82	NM_001289916	19883	Mm.378450	NM_013646	ENSMUSG00000032238	Rora	9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26	RAR-related orphan receptor alpha	protein-coding	0.125000	0.716418	-40(CCTCTTATGGCT,+,0.00)
mm_70646.1	chr8	14247061	14247261	+	1	NA	NA	NA	151286	NM_172910	244310	Mm.404697	NM_172910	ENSMUSG00000047495	Dlgap2	6430596N04Rik|Dap-2|Dap2|Sapap2	discs, large (Drosophila) homolog-associated protein 2	protein-coding	0.005000	0.562189	
mm_93359.1	chr10	103046204	103046404	-	1	NA	NA	NA	-17527	NM_172553	216285	Mm.19287	NM_172553	ENSMUSG00000036602	Alx1	AI314867|C130005I02|Cart1	ALX homeobox 1	protein-coding	0.015000	0.268657	
mm_70552.1	chr8	13060481	13060681	+	1	NA	NA	NA	-327	NM_025834	66901	Mm.441140	NM_025834	ENSMUSG00000031445	Proz	1300015B06Rik	protein Z, vitamin K-dependent plasma glycoprotein	protein-coding	0.030000	0.532338	
mm_116925.1	chr13	55567975	55568175	-	1	NA	NA	NA	3045	NM_145382	212483	Mm.35661	NM_145382	ENSMUSG00000021495	Fam193b	IRIZIO|Kiaa1931	family with sequence similarity 193, member B	protein-coding	0.010000	0.398010	
mm_169844.1	chr16	3120494	3120694	-	1	NA	NA	NA	-471804	NM_146860	258859	Mm.377723	NM_146860	ENSMUSG00000051003	Olfr161	MOR131-1|OR912-47M6	olfactory receptor 161	protein-coding	0.015000	0.442786	88(AGGTCTATAAGG,-,0.00)
mm_116880.1	chr13	55073704	55073904	-	1	NA	NA	NA	26491	NM_011307	20184	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	0.010000	0.417910	
mm_30560.1	chr4	3779244	3779444	+	1	NA	NA	NA	56311	NM_026147	67427	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.005000	0.432836	
mm_75296.1	chr8	41054764	41054964	-	1	NA	NA	NA	-68	NM_001005864	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.040000	0.537313	
mm_89096.1	chr10	84516613	84516813	+	1	NA	NA	NA	17175	NM_175451	216197	Mm.334999	NM_175451	ENSMUSG00000046841	Ckap4	5630400A09Rik|CLIMP-63|P63	cytoskeleton-associated protein 4	protein-coding	0.025000	0.512438	
mm_96270.1	chr11	62820339	62820539	+	1	NA	NA	NA	186	NM_053169	94092	Mm.117087	NM_053169	ENSMUSG00000047821	Trim16	9130006M08Rik|AI482483|EBBP	tripartite motif-containing 16	protein-coding	0.035000	0.567164	
mm_4944.1	chr1	191186595	191186795	+	1	NA	NA	NA	-3362	NM_007498	11910	Mm.2706	NM_007498	ENSMUSG00000026628	Atf3	LRG-21	activating transcription factor 3	protein-coding	0.020000	0.507463	
mm_9121.1	chr1	170215300	170215500	-	1	NA	NA	NA	-7	NM_010633	16589	Mm.209150	NM_010633	ENSMUSG00000026667	Uhmk1	4732477C12Rik|4930500M09Rik|AA673513|AI449218|AU021979|C820018A03Rik|KIS|Kist|OTTMUSG00000021542|P-CIP2	U2AF homology motif (UHM) kinase 1	protein-coding	0.090000	0.701493	-72(CCTCTTAGGCCC,+,0.00)
mm_104037.1	chr11	86286379	86286579	-	1	NA	NA	NA	-28911	NM_027421	70422	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0.015000	0.482587	
mm_95122.1	chr11	34083413	34083613	+	1	NA	NA	NA	36312	NM_010696	16822	Mm.265350	NM_010696	ENSMUSG00000002699	Lcp2	AI323664|BB161688|SLP-76|SLP76|m1Khoe|twm	lymphocyte cytosolic protein 2	protein-coding	0.010000	0.437811	
mm_64863.1	chr7	13038154	13038354	-	1	NA	NA	NA	21	NM_001168469	22192	Mm.196580	NM_145578	ENSMUSG00000005575	Ube2m	2510040H03Rik|UBC12|Ubc-rs2	ubiquitin-conjugating enzyme E2M	protein-coding	0.105000	0.676617	
mm_102366.1	chr11	58390071	58390271	-	1	NA	NA	NA	9525	NM_001330197	70163	Mm.24119	NM_027339	ENSMUSG00000013643	Lypd8	2210415F13Rik	LY6/PLAUR domain containing 8	protein-coding	0.020000	0.502488	
mm_50374.1	chr6	48681892	48682092	+	1	NA	NA	NA	-2586	NM_001243200	107526	Mm.333048	NM_174990	ENSMUSG00000054435	Gimap4	AU019574|E430007K16Rik|Ian-1|Ian1|Imap4	GTPase, IMAP family member 4	protein-coding	0.015000	0.402985	
mm_5067.1	chr1	195018498	195018698	+	1	NA	NA	NA	1199	NR_015566	320977	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0.005000	0.373134	
mm_130712.1	chr15	100755199	100755399	-	1	NA	NA	NA	-6448	NM_021530	59033	Mm.209856	NM_021530	ENSMUSG00000023032	Slc4a8	AW493845|C230026C11|NDCBE|kNBC-3	solute carrier family 4 (anion exchanger), member 8	protein-coding	0.025000	0.507463	
mm_169729.1	chr15	8109259	8109459	+	1	NA	NA	NA	46	NM_133227	170762	Mm.295168	NM_133227	ENSMUSG00000022142	Nup155	D930027M19Rik|mKIAA0791	nucleoporin 155	protein-coding	0.110000	0.592040	55(GTTTCTATAAGG,-,0.00)
mm_126186.1	chr15	78615745	78615945	+	1	NA	NA	NA	18798	NM_028195	72318	Mm.32911	NM_028195	ENSMUSG00000018008	Cyth4	2510004M07Rik|5830469K17Rik|AI467541|Pscd4|mFLJ00017	cytohesin 4	protein-coding	0.020000	0.522388	
mm_53387.1	chr6	129533160	129533360	+	1	NA	NA	NA	24	NR_045270	100504641	Mm.398286	NR_045270	ENSMUSG00000097675	1700101I11Rik	-	RIKEN cDNA 1700101I11 gene	ncRNA	0.070000	0.572139	
mm_158817.1	chrX	167330392	167330592	-	1	NA	NA	NA	79	NM_001290757	170743	Mm.23979	NM_133211	ENSMUSG00000044583	Tlr7	-	toll-like receptor 7	protein-coding	0.020000	0.462687	
mm_138062.1	chr17	33929879	33930079	+	1	NA	NA	NA	85	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.100000	0.741294	
mm_166405.1	chr5	136460222	136460422	+	1	NA	NA	NA	-84519	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	0.005000	0.442786	-35(CTTTTTAAAAAG,+,0.00),-35(CTTTTTAAAAAG,-,0.00)
mm_121608.1	chr14	8258707	8258907	-	1	NA	NA	NA	32	NM_001161667	93732	Mm.28700	NM_053115	ENSMUSG00000021751	Acox2	THCCox	acyl-Coenzyme A oxidase 2, branched chain	protein-coding	0.010000	0.527363	-65(GGGCCTATAGGG,-,0.00)
mm_26844.1	chr3	14766484	14766684	-	1	NA	NA	NA	11876	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.010000	0.542289	
mm_28104.1	chr3	86548179	86548379	-	1	NA	NA	NA	4	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.055000	0.567164	
mm_31437.1	chr4	48540060	48540260	+	1	NA	NA	NA	79	NM_001145924	66665	Mm.140749	NM_028137	ENSMUSG00000039693	Msantd3	2410046L14Rik|2810429P03Rik|5730528L13Rik|Mysantd3	Myb/SANT-like DNA-binding domain containing 3	protein-coding	0.080000	0.601990	
mm_31907.1	chr4	84698215	84698415	+	1	NA	NA	NA	-23229	NM_172870	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.030000	0.507463	
mm_114798.1	chr13	90089583	90089783	+	1	NA	NA	NA	16	NM_025335	66074	Mm.241387	NM_025335	ENSMUSG00000012422	Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|ENSMUSG00000060669|Gm10085|Tmem167a	transmembrane protein 167	protein-coding	0.095000	0.656716	
mm_9598.1	chr1	175479442	175479642	-	1	NA	NA	NA	13003	NM_011880	24012	Mm.7956	NM_011880	ENSMUSG00000026527	Rgs7	-	regulator of G protein signaling 7	protein-coding	0.010000	0.502488	
mm_17140.1	chr2	25094986	25095186	-	1	NA	NA	NA	119	NM_001163626	241275	Mm.218774	NM_172204	ENSMUSG00000036805	Noxa1	NY-CO-31|SDCCAG31	NADPH oxidase activator 1	protein-coding	0.025000	0.587065	
mm_173230.1	chrX	7950779	7950979	-	1	NA	NA	NA	-2990	NM_010413	15185	Mm.29854	NM_010413	ENSMUSG00000031161	Hdac6	Hd6|Hdac5|Sfc6|mHDA2	histone deacetylase 6	protein-coding	0.025000	0.532338	
mm_107082.1	chr12	17266514	17266714	+	1	NA	NA	NA	19	NM_027959	71853	Mm.222825	NM_027959	ENSMUSG00000020571	Pdia6	1700015E05Rik|AL023058|C77895|CaBP5|P5|Txndc7	protein disulfide isomerase associated 6	protein-coding	0.150000	0.766169	
mm_54920.1	chr6	47807120	47807320	-	1	NA	NA	NA	-3568	NR_030485	735289		NR_030485	ENSMUSG00000076060	Mir704	Mirn704|mir-704|mmu-mir-704	microRNA 704	ncRNA	0.015000	0.363184	
mm_35596.1	chr4	43025712	43025912	-	1	NA	NA	NA	2	NM_001305386	56703	Mm.143738	NM_020035	ENSMUSG00000028454	Pigo	PIG-O	phosphatidylinositol glycan anchor biosynthesis, class O	protein-coding	0.060000	0.621891	
mm_163364.1	chr12	32995657	32995857	+	1	NA	NA	NA	41571	NM_198710	19027	Mm.246304	NM_013635	ENSMUSG00000020570	Sypl	AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1	synaptophysin-like protein	protein-coding	0.000000	0.472637	
mm_135278.1	chr16	38443826	38444026	-	1	NA	NA	NA	8763	NM_007414	11544	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.015000	0.467662	
mm_89137.1	chr10	85540083	85540283	+	1	NA	NA	NA	-58228	NM_001017525	74007	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.010000	0.492537	
mm_18057.1	chr2	39226249	39226449	-	1	NA	NA	NA	-11	NM_024209	67857	Mm.389242	NM_024209	ENSMUSG00000026753	Ppp6c	2310003C10Rik	protein phosphatase 6, catalytic subunit	protein-coding	0.120000	0.631841	
mm_28624.1	chr3	95106815	95107015	-	1	NA	NA	NA	15	NM_001293707	18720	Mm.296409	NM_008847	ENSMUSG00000028126	Pip5k1a	PI4P5K-I[a]|PIP5K1-alpha|PIP5KIalpha|Pipk5a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha	protein-coding	0.075000	0.587065	
mm_134128.1	chr16	10395380	10395580	-	1	NA	NA	NA	-15	NM_001291001	70426	Mm.142181	NM_001099275	ENSMUSG00000039179	Tekt5	3300001K11Rik	tektin 5	protein-coding	0.020000	0.557214	
mm_121305.1	chr14	105897390	105897590	+	1	NA	NA	NA	-671	NM_011897	24064	Mm.89982	NM_011897	ENSMUSG00000022114	Spry2	sprouty2	sprouty homolog 2 (Drosophila)	protein-coding	0.135000	0.701493	89(GACCTTAAAGGG,-,0.00)
mm_121745.1	chr14	18868862	18869062	-	1	NA	NA	NA	24665	NM_144839	218793	Mm.23551	NM_144839	ENSMUSG00000058317	Ube2e2	BC016265	ubiquitin-conjugating enzyme E2E 2	protein-coding	0.000000	0.348259	
mm_124638.1	chr15	4375499	4375699	+	1	NA	NA	NA	108	NM_177355	239318	Mm.308996	NM_177355	ENSMUSG00000049148	Plcxd3	B130016O10Rik	phosphatidylinositol-specific phospholipase C, X domain containing 3	protein-coding	0.055000	0.577114	
mm_165189.1	chr2	29903214	29903414	+	1	NA	NA	NA	13251	NM_013615	18286	Mm.330116	NM_013615	ENSMUSG00000026790	Odf2	AI848335|MMTEST29	outer dense fiber of sperm tails 2	protein-coding	0.000000	0.517413	
mm_160271.1	chr7	118442335	118442535	-	1	NA	NA	NA	1117	NM_138649	110058	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk	synaptotagmin XVII	protein-coding	0.020000	0.597015	
mm_14831.1	chr2	147361863	147362063	+	1	NA	NA	NA	830	NR_040330	99041	Mm.373081	NR_040330		AI646519	Aspax1|OTTMUSG00000015701	expressed sequence AI646519	ncRNA	0.040000	0.537313	
mm_156112.1	chrX	114474416	114474616	+	1	NA	NA	NA	183	NM_001290477	237010	Mm.132583	NM_172781	ENSMUSG00000025597	Klhl4	B130014A11|C130018J01Rik	kelch-like 4	protein-coding	0.035000	0.517413	
mm_57416.1	chr6	124911526	124911726	-	1	NA	NA	NA	79	NM_008479	16768	Mm.4528	NM_008479	ENSMUSG00000030124	Lag3	CD223|LAG-3|Ly66	lymphocyte-activation gene 3	protein-coding	0.025000	0.616915	
mm_125432.1	chr15	44457329	44457529	+	1	NA	NA	NA	-124	NM_138674	192190	Mm.211494	NM_138674	ENSMUSG00000038725	Pkhd1l1	AB055648|PKHDL1	polycystic kidney and hepatic disease 1-like 1	protein-coding	0.045000	0.611940	
mm_79750.1	chr9	62373071	62373271	+	1	NA	NA	NA	31828	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.005000	0.447761	
mm_96479.1	chr11	67682430	67682630	+	1	NA	NA	NA	-12796	NM_009038	19674	Mm.439726	NM_009038	ENSMUSG00000020907	Rcvrn	CAR|S-modulin	recoverin	protein-coding	0.010000	0.547264	
mm_54507.1	chr6	35511032	35511232	-	1	NA	NA	NA	28756	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.000000	0.412935	
mm_144635.1	chr18	32958471	32958671	+	1	NA	NA	NA	19530	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.015000	0.467662	
mm_13188.1	chr2	93187678	93187878	+	1	NA	NA	NA	194	NM_001025246	277414	Mm.41033	NM_001025246	ENSMUSG00000068735	Trp53i11	Tp53i11	transformation related protein 53 inducible protein 11	protein-coding	0.130000	0.756219	
mm_20599.1	chr2	131352723	131352923	-	1	NA	NA	NA	69	NM_178607	51902	Mm.477523	NM_178607	ENSMUSG00000048911	Rnf24	2810473M14Rik|4930505A13Rik|AI317164|C86507|D2Ertd504e	ring finger protein 24	protein-coding	0.150000	0.766169	
mm_134543.1	chr16	19873001	19873201	-	1	NA	NA	NA	11173	NR_027896	68162	Mm.35159	NR_015488		A930003A15Rik	AI853191	RIKEN cDNA A930003A15 gene	ncRNA	0.005000	0.383085	
mm_26320.1	chr3	142521637	142521837	+	1	NA	NA	NA	-8599	NM_001083312	229900	Mm.45740	NM_145545	ENSMUSG00000040253	Gbp7	9830147J24Rik	guanylate binding protein 7	protein-coding	0.000000	0.293532	
mm_81508.1	chr9	110034683	110034883	+	1	NA	NA	NA	-17238	NM_001311163	17758	Mm.217318	NM_008633	ENSMUSG00000032479	Map4	AA407148|MAP-4|Mtap-4|Mtap4	microtubule-associated protein 4	protein-coding	0.005000	0.452736	
mm_29963.1	chr3	133464166	133464366	-	1	NA	NA	NA	80124	NM_001346736	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.000000	0.417910	
mm_154882.1	chrX	20698661	20698861	+	1	NA	NA	NA	-5148	NM_145628	236733	Mm.34489	NM_145628	ENSMUSG00000031066	Usp11	6230415D12Rik|mKIAA4085	ubiquitin specific peptidase 11	protein-coding	0.005000	0.626866	
mm_120463.1	chr14	65970962	65971162	+	1	NA	NA	NA	2579	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.010000	0.577114	
mm_821.1	chr1	46852824	46853024	+	1	NA	NA	NA	585	NM_172653	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.120000	0.751244	
mm_34869.1	chr4	155558168	155558368	+	1	NA	NA	NA	-4124	NM_138671	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.020000	0.537313	
mm_91190.1	chr10	21142957	21143157	-	1	NA	NA	NA	17927	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.010000	0.487562	
mm_154074.1	chr19	56420401	56420601	-	1	NA	NA	NA	23372	NM_007611	12369	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.010000	0.368159	
mm_36248.1	chr4	63403172	63403372	-	1	NA	NA	NA	173	NM_001045514	100182	Mm.387725	NM_001045514	ENSMUSG00000039158	Akna	AI597013	AT-hook transcription factor	protein-coding	0.020000	0.631841	
mm_109719.1	chr12	116077680	116077880	+	1	NA	NA	NA	54	NM_009511	22355	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding	0.095000	0.711443	
mm_149539.1	chr19	12501088	12501288	+	1	NA	NA	NA	808	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.125000	0.746269	
mm_150362.1	chr19	34649128	34649328	+	1	NA	NA	NA	8339	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.005000	0.348259	
mm_161198.1	chr13	55402879	55403079	+	1	NA	NA	NA	3331	NM_011392	20505	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	0.040000	0.587065	
mm_124747.1	chr15	6619593	6619793	+	1	NA	NA	NA	39846	NM_011815	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.035000	0.587065	
mm_10306.1	chr2	11171963	11172163	+	1	NA	NA	NA	-319	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.055000	0.527363	
mm_1981.1	chr1	86703716	86703916	+	1	NA	NA	NA	12	NM_001172157	208718	Mm.389152	NM_153530	ENSMUSG00000053333	Dis3l2	4930429A22Rik|8030493P09Rik	DIS3 like 3'-5' exoribonuclease 2	protein-coding	0.140000	0.746269	
mm_158955.1	chr1	88226901	88227101	+	1	NA	NA	NA	-19	NM_001281466	100040766	Mm.386915	NM_001177364	ENSMUSG00000079429	Mroh2a	ENSMUSG00000044873|Heatr7b1|OTTMUSG00000020804	maestro heat-like repeat family member 2A	protein-coding	0.005000	0.477612	
mm_34892.1	chr4	155624407	155624607	+	1	NA	NA	NA	248	NR_040441	100502734	Mm.306018	NR_040441	ENSMUSG00000086682	Gm16023	OTTMUSG00000029160	predicted gene 16023	ncRNA	0.055000	0.557214	
mm_53491.1	chr6	135197917	135198117	+	1	NA	NA	NA	30	NM_028982	74525	Mm.34182	NM_028982	ENSMUSG00000030207	Fam234b	8430419L09Rik|Kiaa1467|mKIAA1467	family with sequence similarity 234, member B	protein-coding	0.110000	0.711443	
mm_32346.1	chr4	104799109	104799309	+	1	NA	NA	NA	32892	NM_001316671	110382	Mm.87072	NM_133882	ENSMUSG00000029656	C8b	4930439B20Rik|AI595927	complement component 8, beta polypeptide	protein-coding	0.040000	0.547264	
mm_157111.1	chrX	9438118	9438318	-	1	NA	NA	NA	31106	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.020000	0.482587	
mm_129846.1	chr15	83162185	83162385	-	1	NA	NA	NA	9923	NM_029787	109754	Mm.22560	NM_029787	ENSMUSG00000018042	Cyb5r3	0610016L08Rik|2500002N19Rik|C85115|Dia-1|Dia1|WU:AL591952.1-001|WU:AL591952.1-002|WU:AL591952.1-003|WU:Cyb5r3	cytochrome b5 reductase 3	protein-coding	0.020000	0.572139	
mm_104946.1	chr11	100121465	100121665	-	1	NA	NA	NA	1	NM_010662	16663	Mm.4646	NM_010662	ENSMUSG00000044041	Krt13	CK13|K13|Krt-1.13|Krt1-13	keratin 13	protein-coding	0.015000	0.572139	-34(ACGCATAAAAGG,-,0.00)
mm_18904.1	chr2	76718895	76719095	-	1	NA	NA	NA	43680	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.045000	0.477612	
mm_1569.1	chr1	74238206	74238406	+	1	NA	NA	NA	1756	NM_029711	76709	Mm.337038	NM_029711	ENSMUSG00000006304	Arpc2	2210023N03Rik|34kDa|p34-Arc	actin related protein 2/3 complex, subunit 2	protein-coding	0.005000	0.388060	
mm_120459.1	chr14	65970516	65970716	+	1	NA	NA	NA	2133	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.020000	0.532338	-34(GCCTATTAATGA,-,0.00)
mm_125032.1	chr15	25754730	25754930	+	1	NA	NA	NA	-88468	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.030000	0.557214	
mm_524.1	chr1	37614344	37614544	+	1	NA	NA	NA	-73428	NM_173870	269181	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.035000	0.592040	
mm_142172.1	chr17	36231477	36231677	-	1	NA	NA	NA	26269	NM_026308	67676	Mm.27131	NM_026308	ENSMUSG00000024446	Rpp21	0610037N01Rik	ribonuclease P 21 subunit	protein-coding	0.085000	0.646766	
mm_86820.1	chr10	20952488	20952688	+	1	NA	NA	NA	41	NM_026203	52906	Mm.253280	NM_026203	ENSMUSG00000019986	Ahi1	1700015F03Rik|Ahi-1|D10Bwg0629e	Abelson helper integration site 1	protein-coding	0.130000	0.741294	
mm_63164.1	chr7	123993164	123993364	+	1	NA	NA	NA	10083	NM_001252072	628779	Mm.40210	NM_001252072	ENSMUSG00000078591	Hs3st4	EG628779|Gm6915	heparan sulfate (glucosamine) 3-O-sulfotransferase 4	protein-coding	0.015000	0.507463	
mm_61984.1	chr7	90972335	90972535	+	1	NA	NA	NA	-118351	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.005000	0.393035	
mm_27262.1	chr3	37724230	37724430	-	1	NA	NA	NA	30	NM_198657	381438	Mm.490549	NM_198657	ENSMUSG00000058174	Gm5148	EG381438	predicted gene 5148	protein-coding	0.040000	0.601990	
mm_155191.1	chrX	56454743	56454943	+	1	NA	NA	NA	4	NM_172779	236790	Mm.474772	NM_172779	ENSMUSG00000035967	Ints6l	4930535D10Rik|6330505F04Rik|D130066O12|Ddx26b	integrator complex subunit 6 like	protein-coding	0.030000	0.512438	
mm_92166.1	chr10	67548986	67549186	-	1	NA	NA	NA	-131	NM_001005419	211488	Mm.297250	NM_001005419	ENSMUSG00000057134	Ado	Gm237	2-aminoethanethiol (cysteamine) dioxygenase	protein-coding	0.160000	0.746269	
mm_97498.1	chr11	78348085	78348285	+	1	NA	NA	NA	1475	NM_001313987	22248	Mm.284811	NM_011676	ENSMUSG00000002058	Unc119	D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h	unc-119 lipid binding chaperone	protein-coding	0.030000	0.527363	
mm_98504.1	chr11	94951996	94952196	+	1	NA	NA	NA	-15497	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.005000	0.532338	
mm_154643.1	chrX	7774675	7774875	+	1	NA	NA	NA	10734	NM_001271491	209446	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	0.005000	0.502488	
mm_81205.1	chr9	107569070	107569270	+	1	NA	NA	NA	7	NM_010489	15587	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	0.085000	0.696517	-80(GATTCTTAAAGG,-,0.00),-77(TCTTAAAGGGCC,+,0.00)
mm_86725.1	chr10	19062649	19062849	+	1	NA	NA	NA	-47339	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.015000	0.462687	
mm_2057.1	chr1	87470191	87470391	+	1	NA	NA	NA	27	NM_028473	73234	Mm.7310	NM_028473	ENSMUSG00000026258	3110079O15Rik	Snorc	RIKEN cDNA 3110079O15 gene	protein-coding	0.035000	0.606965	
mm_17509.1	chr2	29100806	29101006	-	1	NA	NA	NA	-24086	NM_198033	269254	Mm.41867	NM_198033	ENSMUSG00000043535	Setx	A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625	senataxin	protein-coding	0.010000	0.457711	
mm_161100.1	chr12	100112234	100112434	+	1	NA	NA	NA	3	NM_008947	19179	Mm.157105	NM_008947	ENSMUSG00000021178	Psmc1	AI325227|P26s4|Rpt2/S4|S4|rpt2	protease (prosome, macropain) 26S subunit, ATPase 1	protein-coding	0.005000	0.467662	
mm_169784.1	chr16	11272126	11272326	-	1	NA	NA	NA	-17781	NR_035466	100316833		NR_035466	ENSMUSG00000088544	Mir1945	mir-1945|mmu-mir-1945	microRNA 1945	ncRNA	0.015000	0.427861	
mm_105310.1	chr11	102819574	102819774	-	1	NA	NA	NA	12	NM_001159383	14615	Mm.390369	NM_008122	ENSMUSG00000034520	Gjc1	C130009G16Rik|Cnx45|Cx45|Gja-7|Gja7	gap junction protein, gamma 1	protein-coding	0.045000	0.527363	
mm_73403.1	chr8	105893459	105893659	+	1	NA	NA	NA	-8	NM_001301174	234700	Mm.133990	NM_175024	ENSMUSG00000044287	Nrn1l	Cpg15-2|G630049C14Rik	neuritin 1-like	protein-coding	0.035000	0.626866	
mm_82543.1	chr9	20879646	20879846	-	1	NA	NA	NA	-36	NM_145154	70726	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	0.015000	0.522388	
mm_154307.1	chr19	61226575	61226775	-	1	NA	NA	NA	1743	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.170000	0.716418	
mm_50157.1	chr6	41547203	41547403	+	1	NA	NA	NA	25527	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.005000	0.507463	
mm_66629.1	chr7	45510256	45510456	-	1	NA	NA	NA	52	NM_008749	18220	Mm.258923	NM_008749	ENSMUSG00000030824	Nucb1	B230337F23Rik|C77483|Calnuc|MTEST82|Nucb	nucleobindin 1	protein-coding	0.050000	0.597015	3(GGCCTTAAAAAA,-,0.00),5(CCTTAAAAAACG,+,0.00)
mm_114428.1	chr13	64687534	64687734	+	1	NA	NA	NA	-189842	NM_001195435	68880	Mm.390594	NM_001195435	ENSMUSG00000096537	1190003K10Rik	-	RIKEN cDNA 1190003K10 gene	protein-coding	0.005000	0.407960	
mm_45743.1	chr5	86518584	86518784	-	1	NA	NA	NA	-84	NM_177162	320454	Mm.184522	NM_177162	ENSMUSG00000079451	Tmprss11g	9930032O22Rik|Desc4	transmembrane protease, serine 11g	protein-coding	0.010000	0.358209	
mm_92902.1	chr10	83337335	83337535	-	1	NA	NA	NA	382	NM_177388	338365	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.155000	0.791045	
mm_99102.1	chr11	100052187	100052387	+	1	NA	NA	NA	-1736	NM_010659	16660	Mm.439673	NM_010659	ENSMUSG00000048981	Krt31	Ha1|Kha1|Krt1-1|MKHA-1	keratin 31	protein-coding	0.015000	0.487562	
mm_103061.1	chr11	69837192	69837392	-	1	NA	NA	NA	-1233	NM_026982	69186	Mm.248772	NM_026982	ENSMUSG00000070394	Tmem256	1810027O10Rik|3110009M16Rik	transmembrane protein 256	protein-coding	0.040000	0.621891	
mm_36014.1	chr4	56874518	56874718	-	1	NA	NA	NA	-9407	NM_018761	54366	Mm.218891	NM_018761	ENSMUSG00000038816	Ctnnal1	ACRP|AI616177|AW545119|C86009|Catnal1	catenin (cadherin associated protein), alpha-like 1	protein-coding	0.010000	0.358209	
mm_14822.1	chr2	146951268	146951468	+	1	NA	NA	NA	-61692	NM_011917	24128	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	0.005000	0.388060	
mm_30062.1	chr3	137878014	137878214	-	1	NA	NA	NA	10439	NM_001033155	70604	Mm.256488	NM_001033155	ENSMUSG00000074212	Dnajb14	5730496F10Rik	DnaJ heat shock protein family (Hsp40) member B14	protein-coding	0.000000	0.407960	
mm_79834.1	chr9	64803615	64803815	+	1	NA	NA	NA	-7296	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.010000	0.457711	
mm_93420.1	chr10	108700026	108700226	-	1	NA	NA	NA	34	NM_203660	368203	Mm.452758	NM_203660		Gm5136	C6.1AL|EG368203	predicted gene 5136	protein-coding	0.035000	0.616915	
mm_79423.1	chr9	55430171	55430371	+	1	NA	NA	NA	81972	NM_145615	110842	Mm.290853	NM_145615	ENSMUSG00000032314	Etfa	2010200I21Rik|D9Ertd394e	electron transferring flavoprotein, alpha polypeptide	protein-coding	0.055000	0.676617	
mm_98909.1	chr11	98185220	98185420	+	1	NA	NA	NA	7586	NM_013634	19014	Mm.12926	NM_013634	ENSMUSG00000018160	Med1	AI480703|CRSP210|DRIP205|PBP|Pparbp|TRAP220|l11Jus15	mediator complex subunit 1	protein-coding	0.035000	0.442786	
mm_129297.1	chr15	77306532	77306732	-	1	NA	NA	NA	421	NM_001110827	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.165000	0.771144	
mm_48993.1	chr6	4756370	4756570	+	1	NA	NA	NA	9164	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.020000	0.552239	
mm_28593.1	chr3	94436483	94436683	-	1	NA	NA	NA	68	NM_016901	53814	Mm.440422	NM_016901	ENSMUSG00000028141	Oaz3	AZ3|Az-3|Oaz-t	ornithine decarboxylase antizyme 3	protein-coding	0.025000	0.502488	
mm_100055.1	chr11	115187422	115187622	+	1	NA	NA	NA	35	NM_001033393	320534	Mm.260587	NM_001033393	ENSMUSG00000045980	Tmem104	C630005D06Rik|mFLJ00021	transmembrane protein 104	protein-coding	0.100000	0.731343	
mm_8342.1	chr1	150164887	150165087	-	1	NA	NA	NA	-39	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.040000	0.477612	
mm_31142.1	chr4	43383323	43383523	+	1	NA	NA	NA	1441	NM_001037709	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.035000	0.512438	-78(CTATTTATGGTC,+,0.00)
mm_131758.1	chr16	22878876	22879076	+	1	NA	NA	NA	-13039	NR_075099	11625	Mm.197554	NM_013465	ENSMUSG00000022868	Ahsg	-	alpha-2-HS-glycoprotein	protein-coding	0.020000	0.437811	
mm_5569.1	chr1	38898031	38898231	-	1	NA	NA	NA	29	NM_145142	98388	Mm.260054	NM_145142	ENSMUSG00000026080	Chst10	AI507003|AU041319|Hnk-1st|ST	carbohydrate sulfotransferase 10	protein-coding	0.135000	0.751244	
mm_64823.1	chr7	10495262	10495462	-	1	NA	NA	NA	19	NM_009577	22775	Mm.49441	NM_009577	ENSMUSG00000030393	Zik1	-	zinc finger protein interacting with K protein 1	protein-coding	0.055000	0.527363	
mm_57277.1	chr6	123290503	123290703	-	1	NA	NA	NA	-732	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.000000	0.388060	
mm_126167.1	chr15	78558739	78558939	+	1	NA	NA	NA	13944	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.010000	0.582090	
mm_42125.1	chr5	110906302	110906502	+	1	NA	NA	NA	26599	NM_001267622	209683	Mm.295660	NM_024477	ENSMUSG00000033209	Ttc28	2310015L07Rik|6030435N04|AI428795|AI851761|BC002262|TPRBK	tetratricopeptide repeat domain 28	protein-coding	0.005000	0.313433	
mm_88640.1	chr10	79927280	79927480	+	1	NA	NA	NA	39	NM_001288625	13496	Mm.301282	NM_007880	ENSMUSG00000019564	Arid3a	Bright|Dri1|Dril1	AT rich interactive domain 3A (BRIGHT-like)	protein-coding	0.100000	0.721393	
mm_23817.1	chr3	79936342	79936542	+	1	NA	NA	NA	50512	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.025000	0.502488	
mm_37129.1	chr4	116685892	116686092	-	1	NA	NA	NA	30	NR_040442	100502959	Mm.395400	NR_040442		AV051173	-	expressed sequence AV051173	ncRNA	0.085000	0.582090	
mm_166983.1	chr7	45666190	45666390	-	1	NA	NA	NA	104	NM_018876	14344	Mm.290046	NM_018876	ENSMUSG00000055978	Fut2	-	fucosyltransferase 2	protein-coding	0.030000	0.537313	
mm_74752.1	chr8	19064796	19064996	-	1	NA	NA	NA	-86	NM_183038	360214	Mm.271559	NM_183038	ENSMUSG00000061847	Defb39	BD-39	defensin beta 39	protein-coding	0.005000	0.447761	
mm_126914.1	chr15	91037398	91037598	+	1	NA	NA	NA	12453	NM_001109041	16564	Mm.41379	NM_016705	ENSMUSG00000022629	Kif21a	-	kinesin family member 21A	protein-coding	0.010000	0.417910	
mm_47281.1	chr5	122102645	122102845	-	1	NA	NA	NA	1765	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.015000	0.552239	
mm_30249.1	chr3	146596405	146596605	-	1	NA	NA	NA	-644	NM_009474	22262	Mm.10865	NM_009474	ENSMUSG00000028186	Uox	AI663847	urate oxidase	protein-coding	0.020000	0.527363	
mm_20139.1	chr2	121413697	121413897	-	1	NA	NA	NA	-5	NM_153075	212670	Mm.384318	NM_153075	ENSMUSG00000033486	Catsper2	-	cation channel, sperm associated 2	protein-coding	0.145000	0.751244	
mm_132772.1	chr16	44766074	44766274	+	1	NA	NA	NA	438	NM_021325	57781	Mm.416152	NM_021325	ENSMUSG00000022667	Cd200r1	CD200R|Mox2r|OX2R	CD200 receptor 1	protein-coding	0.015000	0.452736	
mm_89533.1	chr10	94514774	94514974	+	1	NA	NA	NA	17	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	AW488095|C630016B22Rik|C88213|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.155000	0.820896	
mm_59670.1	chr7	28377925	28378125	+	1	NA	NA	NA	1203	NM_011756	22695	Mm.389856	NM_011756	ENSMUSG00000044786	Zfp36	Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36	zinc finger protein 36	protein-coding	0.045000	0.621891	-99(GGCCAGAAAAGC,-,0.00)
mm_53364.1	chr6	129377363	129377563	+	1	NA	NA	NA	8040	NM_027709	71183	Mm.79402	NM_027709	ENSMUSG00000030158	Clec12b	4933425B16Rik	C-type lectin domain family 12, member B	protein-coding	0.005000	0.462687	
mm_71402.1	chr8	46419604	46419804	+	1	NA	NA	NA	-51333	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.015000	0.477612	
mm_154312.1	chrM	-27	173	+	1	NA	NA	NA	NA	NA									NA	NA	
mm_170581.1	chr19	5726199	5726399	-	1	NA	NA	NA	18	NM_001114595	114601	Mm.210447	NM_053252	ENSMUSG00000024937	Ehbp1l1	G430002G23Rik	EH domain binding protein 1-like 1	protein-coding	0.135000	0.746269	
mm_169734.1	chr15	8280942	8281142	-	1	NA	NA	NA	111936	NM_001162906	73692	Mm.164436	NM_001162906	ENSMUSG00000039801	2410089E03Rik	4732468D17Rik|Hug|Jbts17|b2b012Clo	RIKEN cDNA 2410089E03 gene	protein-coding	0.030000	0.462687	-33(CCCCATAAAAAC,-,0.00),-31(CCATAAAAACCC,+,0.00)
mm_22366.1	chr2	181109657	181109857	-	1	NA	NA	NA	25532	NM_001006668	16536	Mm.40615	NM_010611	ENSMUSG00000016346	Kcnq2	HNSPC|KQT2|Nmf134	potassium voltage-gated channel, subfamily Q, member 2	protein-coding	0.040000	0.592040	
mm_80111.1	chr9	70512134	70512334	+	1	NA	NA	NA	-8509	NM_033604	93836	Mm.29783	NM_033604	ENSMUSG00000032217	Rnf111	ARK|Arkadia	ring finger 111	protein-coding	0.010000	0.452736	
mm_52444.1	chr6	113650502	113650702	+	1	NA	NA	NA	12135	NM_001113553	108960	Mm.152142	NM_172161	ENSMUSG00000060477	Irak2	6330415L08Rik|AI649099|IRAK-2	interleukin-1 receptor-associated kinase 2	protein-coding	0.010000	0.388060	
mm_123630.1	chr14	68497934	68498134	-	1	NA	NA	NA	35655	NM_007402	11500	Mm.261495	NM_007402	ENSMUSG00000022056	Adam7	ADAM 7|EAP1|EAPI	a disintegrin and metallopeptidase domain 7	protein-coding	0.000000	0.472637	-53(CATTTTAAAAGC,-,0.00)
mm_71491.1	chr8	46750287	46750487	+	1	NA	NA	NA	10642	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.000000	0.442786	
mm_99325.1	chr11	101448345	101448545	+	1	NA	NA	NA	33	NM_027320	70110	Mm.45558	NM_027320	ENSMUSG00000010358	Ifi35	2010008K16Rik|AW986054|IFP35|ifi-35	interferon-induced protein 35	protein-coding	0.015000	0.532338	
mm_161627.1	chr16	77014013	77014213	+	1	NA	NA	NA	44	NM_013918	30940	Mm.40986	NM_013918	ENSMUSG00000022867	Usp25	-	ubiquitin specific peptidase 25	protein-coding	0.165000	0.805970	
mm_5749.1	chr1	46425332	46425532	-	1	NA	NA	NA	-86	NM_001310335	100101919	Mm.383402	NM_001310335	ENSMUSG00000101337	Dnah7c	Dnahc7c	dynein, axonemal, heavy chain 7C	protein-coding	0.040000	0.552239	
mm_14108.1	chr2	125673964	125674164	+	1	NA	NA	NA	964	NM_025613	58521	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	0.005000	0.303483	-76(AGCTTTTAAAGA,-,0.00),-75(GCTTTTAAAGAT,+,0.00)
mm_166045.1	chr4	130663588	130663788	+	1	NA	NA	NA	329	NM_001159605	80912	Mm.440206	NM_030722	ENSMUSG00000028580	Pum1	AA517475|Pumm|mKIAA0099	pumilio RNA-binding family member 1	protein-coding	0.140000	0.751244	
mm_149369.1	chr19	11372449	11372649	+	1	NA	NA	NA	-2939	NM_001310331	666907		NM_001310331	ENSMUSG00000101389	Ms4a4a	EG666907	membrane-spanning 4-domains, subfamily A, member 4A	protein-coding	0.005000	0.358209	52(CTTTTTAAATGC,+,0.00)
mm_167091.1	chr7	105751919	105752119	-	1	NA	NA	NA	216	NM_009906	12751	Mm.20837	NM_009906	ENSMUSG00000030894	Tpp1	Cln2|LPIC|TPP-1|TPP-I	tripeptidyl peptidase I	protein-coding	0.035000	0.542289	
mm_3688.1	chr1	153749626	153749826	+	1	NA	NA	NA	300	NM_011882	24014	Mm.259254	NM_011882	ENSMUSG00000066800	Rnasel	E230029I04Rik	ribonuclease L (2', 5'-oligoisoadenylate synthetase-dependent)	protein-coding	0.015000	0.497512	
mm_157436.1	chrX	38634940	38635140	-	1	NA	NA	NA	103	NM_021550	59048	Mm.441410	NM_021550	ENSMUSG00000048970	C1galt1c1	1500002I11Rik|AB030184|C1GalT2|C81205|Cosmc	C1GALT1-specific chaperone 1	protein-coding	0.065000	0.587065	
mm_43479.1	chr5	136697724	136697924	+	1	NA	NA	NA	3647	NM_001085387	59310	Mm.5178	NM_021611	ENSMUSG00000005474	Myl10	1700027I08Rik|Mylc2pl|PLRLC	myosin, light chain 10, regulatory	protein-coding	0.025000	0.572139	57(CACTTTAAGAGG,-,0.00),58(ACTTTAAGAGGC,+,0.00)
mm_155344.1	chrX	68678515	68678715	+	1	NA	NA	NA	74	NM_001290424	14265	Mm.3451	NM_008031	ENSMUSG00000000838	Fmr1	FMRP|Fmr-1	fragile X mental retardation syndrome 1	protein-coding	0.125000	0.701493	
mm_53319.1	chr6	129187306	129187506	+	1	NA	NA	NA	6791	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.000000	0.333333	
mm_137142.1	chr17	23620674	23620874	+	1	NA	NA	NA	19948	NM_001289482	332221	Mm.270315	NM_001033425	ENSMUSG00000023902	Zscan10	BC068284|Zfp206|Zkscan10|Znf206	zinc finger and SCAN domain containing 10	protein-coding	0.005000	0.462687	
mm_82604.1	chr9	21367333	21367533	-	1	NA	NA	NA	-438	NM_001042708	16201	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.055000	0.562189	
mm_74762.1	chr8	20297434	20297634	-	1	NA	NA	NA	-102	NR_030708	547150	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0.075000	0.636816	
mm_9337.1	chr1	172004432	172004632	-	1	NA	NA	NA	22763	NM_033509	93840	Mm.36148	NM_033509	ENSMUSG00000026556	Vangl2	C530001F03Rik|Lootl|Lp|Lpp1|Ltap|Vang1l2|loop-tail|ska17|ska<m17Jus>|stbm|strabismus	vang-like 2 (van gogh, Drosophila)	protein-coding	0.025000	0.487562	
mm_125330.1	chr15	38661848	38662048	+	1	NA	NA	NA	44	NM_025494	66335	Mm.276618	NM_025494	ENSMUSG00000022295	Atp6v1c1	1700025B18Rik|U13839	ATPase, H+ transporting, lysosomal V1 subunit C1	protein-coding	0.130000	0.701493	
mm_76410.1	chr8	84893671	84893871	-	1	NA	NA	NA	150	NM_001044744	270076	Mm.2475	NM_008097	ENSMUSG00000003809	Gcdh	9030411L18|AI266902|D17825|GCD	glutaryl-Coenzyme A dehydrogenase	protein-coding	0.025000	0.592040	-90(CTCTTTTAAAAG,-,0.00),-89(TCTTTTAAAAGG,+,0.00),-89(TCTTTTAAAAGG,-,0.00),-88(CTTTTAAAAGGC,+,0.00)
mm_53192.1	chr6	125494337	125494537	+	1	NA	NA	NA	318	NM_007657	12527	Mm.210676	NM_007657	ENSMUSG00000030342	Cd9	Tspan29	CD9 antigen	protein-coding	0.110000	0.741294	
mm_3922.1	chr1	162570570	162570770	+	1	NA	NA	NA	-158	NM_016796	53330	Mm.10699	NM_016796	ENSMUSG00000026696	Vamp4	D1Ertd147e	vesicle-associated membrane protein 4	protein-coding	0.110000	0.761194	
mm_104920.1	chr11	99840257	99840457	-	1	NA	NA	NA	-2291	NM_001195383	100502865	Mm.476649	NM_001195383	ENSMUSG00000078257	2300003K06Rik	-	RIKEN cDNA 2300003K06 gene	protein-coding	0.020000	0.442786	-69(TCTTTAATAGAA,+,0.00)
mm_88867.1	chr10	80940167	80940367	+	1	NA	NA	NA	10176	NM_008655	17873	Mm.1360	NM_008655	ENSMUSG00000015312	Gadd45b	AI323528|Myd118	growth arrest and DNA-damage-inducible 45 beta	protein-coding	0.020000	0.507463	
mm_116931.1	chr13	55784406	55784606	-	1	NA	NA	NA	-73	NM_029772	76856	Mm.159795	NM_029772	ENSMUSG00000021499	Catsper3	4921522D01Rik|CACRC	cation channel, sperm associated 3	protein-coding	0.010000	0.527363	-38(TGCTTTATGAGG,-,0.00)
mm_2318.1	chr1	92048999	92049199	+	1	NA	NA	NA	131242	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.000000	0.467662	
mm_116061.1	chr13	27513116	27513316	-	1	NA	NA	NA	1	NM_001311125	74188	Mm.46090	NM_023741	ENSMUSG00000021346	Prl8a8	1600032B14Rik|Ghd14|PLP-Cgamma|Prlpc3	prolactin family 8, subfamily a, member 81	protein-coding	0.005000	0.407960	
mm_542.1	chr1	38017771	38017971	+	1	NA	NA	NA	19861	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.010000	0.393035	65(GTTTTTAAAAGC,+,0.00),65(GTTTTTAAAAGC,-,0.00)
mm_47110.1	chr5	119080756	119080956	-	1	NA	NA	NA	-27380	NR_040693	73477	Mm.410863	NR_040693	ENSMUSG00000100573	1700081H04Rik	-	RIKEN cDNA 1700081H04 gene	ncRNA	0.005000	0.472637	
mm_129712.1	chr15	81858437	81858637	-	1	NA	NA	NA	-211	NM_020507	57259	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.055000	0.517413	-87(CGGTTTAAAAAA,-,0.00)
mm_40749.1	chr5	66745776	66745976	+	1	NA	NA	NA	36	NM_001001980	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.115000	0.731343	
mm_19759.1	chr2	105126463	105126663	-	1	NA	NA	NA	34	NM_144783	22431	Mm.389339	NM_144783	ENSMUSG00000016458	Wt1	D630046I19Rik|Wt-1	Wilms tumor 1 homolog	protein-coding	0.050000	0.661692	
mm_36309.1	chr4	69758351	69758551	-	1	NA	NA	NA	651984	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.010000	0.427861	80(GGATTTTAAAAG,-,0.00),81(GATTTTAAAAGA,-,0.00)
mm_1650.1	chr1	74661606	74661806	+	1	NA	NA	NA	-48	NM_001014974	67534	Mm.260714	NM_001014974	ENSMUSG00000033257	Ttll4	4632407P03Rik|AI451681|mKIAA0173	tubulin tyrosine ligase-like family, member 4	protein-coding	0.060000	0.681592	
mm_65252.1	chr7	19871238	19871438	-	1	NA	NA	NA	-10039	NM_001033419	330483	Mm.260192	NM_001033419	ENSMUSG00000014686	Ceacam16	Gm769	carcinoembryonic antigen-related cell adhesion molecule 16	protein-coding	0.030000	0.577114	
mm_154923.1	chrX	23693389	23693589	+	1	NA	NA	NA	438	NM_001305675	72404	Mm.423	NM_175180	ENSMUSG00000036769	Wdr44	2610034K17Rik|RAB11BP|RPH11	WD repeat domain 44	protein-coding	0.065000	0.592040	-34(TCCTATAAATGG,-,0.00)
mm_28158.1	chr3	87768846	87769046	-	1	NA	NA	NA	7	NM_001032413	73182	Mm.158962	NM_028460	ENSMUSG00000028073	Pear1	3110045G13Rik|Jedi-1|Megf12	platelet endothelial aggregation receptor 1	protein-coding	0.100000	0.751244	
mm_125143.1	chr15	30634601	30634801	+	1	NA	NA	NA	-404425	NR_045186	73784	Mm.66947	NR_045186		4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.025000	0.577114	
mm_145561.1	chr18	60812273	60812473	+	1	NA	NA	NA	297	NR_039567	100628611		NR_039567	ENSMUSG00000093327	Mir5107	mir-5107|mmu-mir-5107|mu-mir-5107	microRNA 5107	ncRNA	0.025000	0.537313	
mm_51890.1	chr6	90604879	90605079	+	1	NA	NA	NA	99	NM_027868	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.110000	0.736318	
mm_35269.1	chr4	19900895	19901095	-	1	NA	NA	NA	21571	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.015000	0.343284	
mm_98868.1	chr11	97799296	97799496	+	1	NA	NA	NA	-276	NM_010688	16796	Mm.271967	NM_010688	ENSMUSG00000038366	Lasp1	AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma	LIM and SH3 protein 1	protein-coding	0.075000	0.656716	
mm_46849.1	chr5	113639103	113639303	-	1	NA	NA	NA	11187	NM_008153	14747	Mm.5196	NM_008153	ENSMUSG00000042190	Cmklr1	ChemR23|DEZ|Gpcr27|mcmklr1	chemokine-like receptor 1	protein-coding	0.015000	0.512438	
mm_140326.1	chr17	86753742	86753942	+	1	NA	NA	NA	-22	NM_010137	13819	Mm.1415	NM_010137	ENSMUSG00000024140	Epas1	HIF-2alpha|HIF2A|HLF|HRF|MOP2|bHLHe73	endothelial PAS domain protein 1	protein-coding	0.045000	0.457711	
mm_66091.1	chr7	30973317	30973517	-	1	NA	NA	NA	52	NM_001164185	54135	Mm.4067	NM_017405	ENSMUSG00000001247	Lsr	ILDR3|Lisch7	lipolysis stimulated lipoprotein receptor	protein-coding	0.075000	0.671642	
mm_110432.1	chr12	46819262	46819462	-	1	NA	NA	NA	-587	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.205000	0.870647	
mm_46821.1	chr5	113163198	113163398	-	1	NA	NA	NA	15	NM_172884	243219	Mm.160131	NM_172884	ENSMUSG00000051339	2900026A02Rik	8430408O14Rik|A530094D01|AW539426|Gm449|Kiaa1671|mKIAA1671	RIKEN cDNA 2900026A02 gene	protein-coding	0.030000	0.641791	
mm_24930.1	chr3	96559491	96559691	+	1	NA	NA	NA	1634	NM_023719	56338	Mm.410189	NM_023719	ENSMUSG00000038393	Txnip	1200008J08Rik|AA682105|Hyplip1|THIF|Tbp-2|VDUP1	thioredoxin interacting protein	protein-coding	0.035000	0.502488	
mm_75996.1	chr8	72443678	72443878	-	1	NA	NA	NA	0	NM_028500	73316	Mm.196315	NM_028500	ENSMUSG00000019732	Calr3	1700031L01Rik|6330586I20Rik|Crt2|cspn	calreticulin 3	protein-coding	0.080000	0.592040	
mm_36799.1	chr4	103171689	103171889	-	1	NA	NA	NA	43095	NM_177732	242585	Mm.281800	NM_177732	ENSMUSG00000028521	Slc35d1	AI834976|C330011J09|UGTREL7|mKIAA0260	solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	protein-coding	0.005000	0.477612	
mm_16658.1	chr2	6627837	6628037	-	1	NA	NA	NA	93725	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.020000	0.427861	
mm_16995.1	chr2	18316859	18317059	-	1	NA	NA	NA	75871	NM_001190817	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.005000	0.348259	
mm_171530.1	chr4	146627686	146627886	+	1	NA	NA	NA	-80913	NR_045468	67524	Mm.444300	NR_045468	ENSMUSG00000086046	1700095A21Rik	-	RIKEN cDNA 1700095A21 gene	ncRNA	0.010000	0.472637	
mm_58261.1	chr6	145250292	145250492	-	1	NA	NA	NA	-160	NR_045598	100039495	Mm.121014	NR_045598	ENSMUSG00000086013	Gm15706	OTTMUSG00000025463	predicted gene 15706	ncRNA	0.160000	0.805970	
mm_94648.1	chr11	16951354	16951554	+	1	NA	NA	NA	44	NM_176982	319701	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.065000	0.626866	
mm_102814.1	chr11	68957365	68957565	-	1	NA	NA	NA	-607	NM_177566	442801	Mm.376147	NM_177566	ENSMUSG00000052921	Arhgef15	D130071N09|D530030K12Rik|E5	Rho guanine nucleotide exchange factor (GEF) 15	protein-coding	0.030000	0.537313	
mm_158165.1	chrX	103483148	103483348	-	1	NA	NA	NA	-15	NR_001463	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.050000	0.497512	
mm_21284.1	chr2	156970187	156970387	-	1	NA	NA	NA	21824	NM_013865	29812	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0.020000	0.517413	
mm_60618.1	chr7	44595949	44596149	+	1	NA	NA	NA	5163	NM_001290682	16504	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.035000	0.636816	
mm_143742.1	chr17	81512816	81513016	-	1	NA	NA	NA	225471	NM_001286684	20541	Mm.265834	NM_011406	ENSMUSG00000054640	Slc8a1	AI852629|AV344025|D930008O12Rik|Ncx1	solute carrier family 8 (sodium/calcium exchanger), member 1	protein-coding	0.015000	0.323383	-49(GAGTTTAAAAAG,-,0.00)
mm_11387.1	chr2	31314240	31314440	+	1	NA	NA	NA	68417	NM_019681	14299	Mm.249318	NM_019681	ENSMUSG00000062661	Ncs1	9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1	neuronal calcium sensor 1	protein-coding	0.095000	0.736318	
mm_154222.1	chr19	59458436	59458636	-	1	NA	NA	NA	99	NR_002863	329078	Mm.80382	NR_002863	ENSMUSG00000087095	Emx2os	-	Emx2 opposite strand/antisense transcript (non-protein coding)	ncRNA	0.110000	0.701493	-99(GACTCTTTAAAG,-,0.00),-97(CTCTTTAAAGTG,+,0.00)
mm_159391.1	chr3	92621557	92621757	-	1	NA	NA	NA	3	NM_001166172	78382	Mm.235474	NM_001166172	ENSMUSG00000086848	Lce6a	2210420J11Rik	late cornified envelope 6A	protein-coding	0.000000	0.432836	
mm_130210.1	chr15	95528640	95528840	-	1	NA	NA	NA	-488	NM_001289653	54003	Mm.3959	NM_016743	ENSMUSG00000022454	Nell2	A330108N19Rik|R75516|mel91	NEL-like 2	protein-coding	0.045000	0.641791	
mm_34334.1	chr4	143349721	143349921	+	1	NA	NA	NA	71	NM_001162983	242735	Mm.94020	NM_001162983	ENSMUSG00000028584	Lrrc38	A230053A07Rik	leucine rich repeat containing 38	protein-coding	0.055000	0.626866	
mm_101209.1	chr11	20063587	20063787	-	1	NA	NA	NA	49264	NM_146243	66713	Mm.259045	NM_146243	ENSMUSG00000020152	Actr2	4921510D23Rik|AA409782|Arp2|D6Ertd746e	ARP2 actin-related protein 2	protein-coding	0.005000	0.368159	
mm_24394.1	chr3	90266437	90266637	+	1	NA	NA	NA	23	NM_201407	229541	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0.025000	0.616915	
mm_140753.1	chr17	17374125	17374325	-	1	NA	NA	NA	-107	NM_025934	67045	Mm.35117	NM_025934	ENSMUSG00000023852	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2 (yeast)	protein-coding	0.050000	0.537313	
mm_151538.1	chr19	59074964	59075164	+	1	NA	NA	NA	1005	NM_175172	71653	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Kiaa1598|Shootin1|mKIAA1598	shootin 1	protein-coding	0.040000	0.527363	
mm_31224.1	chr4	44019838	44020038	+	1	NA	NA	NA	7288	NM_001290470	12757	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.030000	0.487562	
mm_86964.1	chr10	25295360	25295560	+	1	NA	NA	NA	3703	NM_018747	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.010000	0.373134	
mm_72303.1	chr8	76901450	76901650	+	1	NA	NA	NA	-958	NM_001083906	110784	Mm.324393	NM_001083906	ENSMUSG00000031618	Nr3c2	MR|Mlr	nuclear receptor subfamily 3, group C, member 2	protein-coding	0.040000	0.522388	-34(GTGTTTAAAGGG,-,0.00)
mm_172330.1	chr7	108026772	108026972	+	1	NA	NA	NA	5469	NM_146734	258729	Mm.223162	NM_146734	ENSMUSG00000094426	Olfr478	MOR204-13	olfactory receptor 478	protein-coding	0.075000	0.671642	
mm_81010.1	chr9	104035422	104035622	+	1	NA	NA	NA	27599	NM_025692	66663	Mm.224935	NM_025692	ENSMUSG00000032557	Uba5	5730525G14Rik|AW240750|Ube1dc1	ubiquitin-like modifier activating enzyme 5	protein-coding	0.025000	0.562189	
mm_135796.1	chr16	57198945	57199145	-	1	NA	NA	NA	-31713	NM_023175	52633	Mm.383203	NM_023175	ENSMUSG00000022751	Nit2	1190017B19Rik|D16Ertd502e	nitrilase family, member 2	protein-coding	0.025000	0.507463	
mm_52995.1	chr6	123267101	123267301	+	1	NA	NA	NA	5094	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.015000	0.442786	
mm_75954.1	chr8	71693740	71693940	-	1	NA	NA	NA	4588	NM_013564	16336	Mm.476857	NM_013564	ENSMUSG00000079019	Insl3	Rlf|Rlnl	insulin-like 3	protein-coding	0.045000	0.651741	
mm_44672.1	chr5	29735788	29735988	-	1	NA	NA	NA	-10	NM_001037940	23950	Mm.290110	NM_011847	ENSMUSG00000029131	Dnajb6	Mrj|mDj4	DnaJ heat shock protein family (Hsp40) member B6	protein-coding	0.125000	0.641791	
mm_46017.1	chr5	90903093	90903293	-	1	NA	NA	NA	-706	NM_009140	20310	Mm.4979	NM_009140	ENSMUSG00000058427	Cxcl2	CINC-2a|GROb|Gro2|MIP-2|MIP-2a|Mgsa-b|Mip2|Scyb|Scyb2	chemokine (C-X-C motif) ligand 2	protein-coding	0.015000	0.452736	
mm_131045.1	chr16	3908890	3909090	+	1	NA	NA	NA	-19	NM_029738	76779	Mm.458921	NM_029738	ENSMUSG00000014232	Cluap1	2310030D15Rik|2610111M03Rik	clusterin associated protein 1	protein-coding	0.070000	0.601990	
mm_77424.1	chr8	121083079	121083279	-	1	NA	NA	NA	-69	NR_130109	68790	Mm.246916	NR_045471	ENSMUSG00000097336	Fendrr	1110050K14Rik|LL66|linc-Foxf1a|lincFoxf1	Foxf1 adjacent non-coding developmental regulatory RNA	ncRNA	0.110000	0.666667	
mm_129755.1	chr15	82354218	82354418	-	1	NA	NA	NA	-27	NM_025987	67130	Mm.27570	NM_025987	ENSMUSG00000022450	Ndufa6	14kDa|2700038D15Rik|B230217P19Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6 (B14)	protein-coding	0.105000	0.671642	
mm_136536.1	chr16	97734723	97734923	-	1	NA	NA	NA	28932	NM_023663	72388	Mm.35290	NM_023663	ENSMUSG00000005251	Ripk4	2310069J12Rik|AI552420|ANKK2|Ankrd3|DIk|PKK|RIP4	receptor-interacting serine-threonine kinase 4	protein-coding	0.010000	0.557214	
mm_7714.1	chr1	130629503	130629703	-	1	NA	NA	NA	3	NM_009581	22789	Mm.4644	NM_009581	ENSMUSG00000042554	Zp3r	AV264399|SP56	zona pellucida 3 receptor	protein-coding	0.010000	0.417910	
mm_119035.1	chr14	30558620	30558820	+	1	NA	NA	NA	9589	NM_009388	21881	Mm.290692	NM_009388	ENSMUSG00000021957	Tkt	p68	transketolase	protein-coding	0.020000	0.557214	
mm_173257.1	chrX	94827609	94827809	+	1	NA	NA	NA	-29420	NR_003292	668171	Mm.426134	NR_003292		Zxda	4933406P09Rik|AW413531	zinc finger, X-linked, duplicated A	pseudo	0.005000	0.492537	
mm_84983.1	chr9	85749195	85749395	-	1	NA	NA	NA	39	NM_001081282	108837	Mm.22315	NM_175371	ENSMUSG00000035941	Ibtk	5430411K16Rik|AA409502|BTKI|mKIAA1417	inhibitor of Bruton agammaglobulinemia tyrosine kinase	protein-coding	0.115000	0.661692	
mm_51040.1	chr6	65601087	65601287	+	1	NA	NA	NA	10789	NM_001001495	414084	Mm.117558	NM_001001495	ENSMUSG00000044162	Tnip3	9030611K07Rik|ABIN-3|LIND	TNFAIP3 interacting protein 3	protein-coding	0.005000	0.427861	
mm_14436.1	chr2	130629244	130629444	+	1	NA	NA	NA	683	NM_198176	380601	Mm.27090	NM_198176	ENSMUSG00000079043	Fastkd5	C78212|mKIAA1792	FAST kinase domains 5	protein-coding	0.025000	0.492537	-34(GACTATAAAGGC,-,0.00)
mm_14736.1	chr2	144331423	144331623	+	1	NA	NA	NA	-161	NM_152947	107586	Mm.252750	NM_026924	ENSMUSG00000037279	Ovol2	1700108N11Rik|1810007D21Rik|M-OVO|M-OVO-A|M-OVO-B|MOVO|Ovo2|Zfp339|movo2	ovo like zinc finger 2	protein-coding	0.060000	0.651741	
mm_146856.1	chr18	24178799	24178999	-	1	NA	NA	NA	-26445	NM_013814	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.025000	0.547264	
mm_45627.1	chr5	76304391	76304591	-	1	NA	NA	NA	57	NM_007715	12753	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0.140000	0.771144	
mm_148272.1	chr18	81927326	81927526	-	1	NA	NA	NA	64654	NR_039589	100628596		NR_039589	ENSMUSG00000093036	Mir5127	mmu-mir-5127|mu-mir-5127	microRNA 5127	ncRNA	0.045000	0.552239	
mm_24029.1	chr3	87535965	87536165	+	1	NA	NA	NA	10487	NM_012051	27049	Mm.219460	NM_012051	ENSMUSG00000003382	Etv3	AI414410|METS|Pe1	ets variant 3	protein-coding	0.030000	0.572139	
mm_24626.1	chr3	93555039	93555239	+	1	NA	NA	NA	22	NM_009112	20194	Mm.1	NM_009112	ENSMUSG00000041959	S100a10	42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11	S100 calcium binding protein A10 (calpactin)	protein-coding	0.075000	0.676617	
mm_65774.1	chr7	28764514	28764714	-	1	NA	NA	NA	2030	NM_001306222	18036	Mm.220333	NM_010908	ENSMUSG00000030595	Nfkbib	I(Kappa)B(beta)|I-kappa-B-beta|IKB-beta|IKappaBbeta|IkB|IkBb|NF-kappa-BIB|ikB-B	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, beta	protein-coding	0.005000	0.402985	-84(CCTTTTAAGTCA,+,0.00)
mm_29266.1	chr3	107333863	107334063	-	1	NA	NA	NA	-674	NM_001045807	229700	Mm.27966	NM_001045807	ENSMUSG00000048109	Rbm15	C230088J01Rik|mKIAA1438	RNA binding motif protein 15	protein-coding	0.085000	0.656716	
mm_82897.1	chr9	32701090	32701290	-	1	NA	NA	NA	5148	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.020000	0.497512	
mm_77246.1	chr8	115705388	115705588	-	1	NA	NA	NA	1406	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.010000	0.427861	
mm_117165.1	chr13	62858288	62858488	-	1	NA	NA	NA	-18	NM_007994	14120	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	0.025000	0.542289	
mm_106326.1	chr11	118317360	118317560	-	1	NA	NA	NA	25074	NM_021440	58251	Mm.439815	NM_021440	ENSMUSG00000076433	BC100451	Cep295nl|Ddc8|FS39|Kiaa1731nl	cDNA sequence BC100451	protein-coding	0.025000	0.497512	
mm_147733.1	chr18	61036100	61036300	-	1	NA	NA	NA	-1	NM_009880	12590	Mm.144448	NM_009880	ENSMUSG00000024619	Cdx1	Cdx|Cdx-1	caudal type homeobox 1	protein-coding	0.145000	0.766169	-53(GGCTATAAAAGG,-,0.00)
mm_56784.1	chr6	116637230	116637430	-	1	NA	NA	NA	-8331	NM_026057	67255	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0.005000	0.407960	-15(GTCTATTTGAGG,-,0.00)
mm_69770.1	chr7	141016680	141016880	-	1	NA	NA	NA	112	NM_001033632	213002	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.010000	0.457711	
mm_67195.1	chr7	74013551	74013751	-	1	NA	NA	NA	31	NM_009181	20450	Mm.4954	NM_009181	ENSMUSG00000025789	St8sia2	AI323367|ST8SiaII|STX|Siat8b	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2	protein-coding	0.100000	0.751244	
mm_20555.1	chr2	131072528	131072728	-	1	NA	NA	NA	-8814	NM_001163529	110751	Mm.108550	NM_033615	ENSMUSG00000027318	Adam33	Adaml	a disintegrin and metallopeptidase domain 33	protein-coding	0.025000	0.597015	
mm_136054.1	chr16	78576929	78577129	-	1	NA	NA	NA	-341	NM_025967	67102	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.025000	0.487562	
mm_128253.1	chr15	36770903	36771103	-	1	NA	NA	NA	19929	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.015000	0.497512	-51(TGCCCTAAATGG,-,0.00),-49(CCCTAAATGGTC,+,0.00),-26(CCCTTTAAAATC,+,0.00),-25(CCTTTAAAATCC,+,0.00)
mm_67099.1	chr7	69909451	69909651	-	1	NA	NA	NA	413457	NR_045940	73796	Mm.410832	NR_045940	ENSMUSG00000108885	4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA	0.000000	0.482587	
mm_91177.1	chr10	20725021	20725221	-	1	NA	NA	NA	-43	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.035000	0.537313	
mm_97302.1	chr11	76601181	76601381	+	1	NA	NA	NA	-23542	NM_198894	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.040000	0.517413	
mm_74251.1	chr8	124831709	124831909	+	1	NA	NA	NA	31220	NM_025615	66523	Mm.436864	NM_025615	ENSMUSG00000031984	2810004N23Rik	3110004G14Rik|Ayu21-55|Gt(pU21)55Imeg|GtAyu21-55	RIKEN cDNA 2810004N23 gene	protein-coding	0.020000	0.587065	
mm_39512.1	chr5	21256011	21256211	+	1	NA	NA	NA	69844	NM_175437	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.005000	0.398010	
mm_116320.1	chr13	37769833	37770033	-	1	NA	NA	NA	-56105	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.005000	0.572139	-35(CTCTATAAAAAG,-,0.00)
mm_162504.1	chr1	148841601	148841801	+	1	NA	NA	NA	1080738	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.000000	0.343284	
mm_124705.1	chr15	6540250	6540450	+	1	NA	NA	NA	-39497	NM_001278269	23880	Mm.170905	NM_011815	ENSMUSG00000022148	Fyb	ADAP|B630013F22Rik|FYB-120/130|Slap130|p120/130|p120/p130	FYN binding protein	protein-coding	0.015000	0.487562	
mm_106899.1	chr12	8012591	8012791	+	1	NA	NA	NA	35014	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.005000	0.383085	
mm_168869.1	chr12	35908952	35909152	-	1	NA	NA	NA	-16569	NM_207531	403205	Mm.190508	NM_207531	ENSMUSG00000036231	Agr3	BCMP11|E030025L21Rik|Gm888	anterior gradient 3	protein-coding	0.040000	0.542289	
mm_106151.1	chr11	116604936	116605136	-	1	NA	NA	NA	11349	NM_009591	11298	Mm.42233	NM_009591	ENSMUSG00000020804	Aanat	AA-NAT|Nat-2|Nat4|Snat	arylalkylamine N-acetyltransferase	protein-coding	0.040000	0.597015	37(GCCCATATGAGC,-,0.00)
mm_14537.1	chr2	132785882	132786082	+	1	NA	NA	NA	4704	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.000000	0.407960	
mm_98741.1	chr11	96365781	96365981	+	1	NA	NA	NA	123	NM_008266	15407	Mm.890	NM_008266	ENSMUSG00000018973	Hoxb1	Hox-2.9	homeobox B1	protein-coding	0.050000	0.597015	-31(CTTTTTAGAGTA,+,0.00)
mm_55344.1	chr6	56704593	56704793	-	1	NA	NA	NA	6	NM_025520	66373	Mm.25642	NM_025520	ENSMUSG00000091625	Lsm5	2010208O10Rik|2310034K10Rik	LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.075000	0.562189	
mm_1800.1	chr1	80445792	80445992	+	1	NA	NA	NA	-40	NR_040460	72208	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	Jr3	RIKEN cDNA 1700016L21 gene	ncRNA	0.010000	0.437811	
mm_43308.1	chr5	134721939	134722139	+	1	NA	NA	NA	25284	NM_007925	13717	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	0.010000	0.537313	
mm_93816.1	chr10	121435656	121435856	-	1	NA	NA	NA	40494	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.065000	0.507463	-97(CCTTTAAGAAAC,+,0.00)
mm_96369.1	chr11	67219603	67219803	+	1	NA	NA	NA	-18109	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.010000	0.432836	71(ACCTTGAAAAGG,-,0.00)
mm_142451.1	chr17	45592779	45592979	-	1	NA	NA	NA	-486	NM_022880	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.015000	0.587065	
mm_41192.1	chr5	88327875	88328075	+	1	NA	NA	NA	10663	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.015000	0.393035	
mm_93264.1	chr10	95630279	95630479	-	1	NA	NA	NA	-66212	NM_027722	71207	Mm.24397	NM_027722	ENSMUSG00000020029	Nudt4	4933436C10Rik|DIPP2|DIPP2alpha|DIPP2beta|HDCMB47P	nudix (nucleoside diphosphate linked moiety X)-type motif 4	protein-coding	0.010000	0.562189	-34(CACTATAAAAGG,-,0.00)
mm_30516.1	chr3	158528831	158529031	-	1	NA	NA	NA	33290	NM_001291453	242274	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding	0.000000	0.288557	
mm_131375.1	chr16	13923890	13924090	+	1	NA	NA	NA	-16639	NM_001289563	93734	Mm.76554	NM_033564	ENSMUSG00000022679	Mpv17l	M-LP	Mpv17 transgene, kidney disease mutant-like	protein-coding	0.005000	0.393035	
mm_117268.1	chr13	64421566	64421766	-	1	NA	NA	NA	-10887	NM_053180	105278	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	0.005000	0.452736	-97(GCCCCTAAAAGG,-,0.00)
mm_15374.1	chr2	156475434	156475634	+	1	NA	NA	NA	0	NM_001006664	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.060000	0.686567	
mm_106826.1	chr12	7988659	7988859	+	1	NA	NA	NA	11082	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.000000	0.502488	76(TCTTTAATACTG,+,0.00)
mm_85224.1	chr9	97076796	97076996	-	1	NA	NA	NA	34145	NM_138756	192287	Mm.228067	NM_138756	ENSMUSG00000032449	Slc25a36	C330005L02Rik	solute carrier family 25, member 36	protein-coding	0.020000	0.353234	
mm_98261.1	chr11	88905832	88906032	+	1	NA	NA	NA	4	NR_045955	73921	Mm.439148	NR_045955	ENSMUSG00000087338	Scpep1os	4930405P13Rik	serine carboxypeptidase 1, opposite strand	ncRNA	0.010000	0.527363	
mm_90641.1	chr10	128637307	128637507	+	1	NA	NA	NA	8586	NM_011772	22781	Mm.358648	NM_011772	ENSMUSG00000002578	Ikzf4	A630026H08Rik|Eos|Zfpn1a4|Znfn1a4	IKAROS family zinc finger 4	protein-coding	0.015000	0.452736	
mm_60842.1	chr7	45783609	45783809	+	1	NA	NA	NA	-238	NM_001005511	381983	Mm.44928	NM_001005511	ENSMUSG00000062044	Lmtk3	BC059845|aatyk3	lemur tyrosine kinase 3	protein-coding	0.050000	0.567164	
mm_7373.1	chr1	106759638	106759838	-	1	NA	NA	NA	4	NM_027534	70750	Mm.458911	NM_027534	ENSMUSG00000009905	Kdsr	6330410P18Rik|9430079B08Rik|Fvt1	3-ketodihydrosphingosine reductase	protein-coding	0.095000	0.686567	
mm_36115.1	chr4	58907459	58907659	-	1	NA	NA	NA	5166	NM_172381	230249	Mm.234801	NM_172381	ENSMUSG00000050812	AI314180	AW558785|BB181316|mKIAA0368	expressed sequence AI314180	protein-coding	0.000000	0.323383	
mm_159689.1	chr5	17962437	17962637	+	1	NA	NA	NA	-33	NM_001081143	242851	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.020000	0.447761	
mm_104918.1	chr11	99815563	99815763	-	1	NA	NA	NA	3	NM_001100614	670496	Mm.466614	NM_001100614	ENSMUSG00000078258	Gm11564	OTTMUSG00000002201	predicted gene 11564	protein-coding	0.000000	0.482587	-34(GGGTATAAAAGG,-,0.00)
mm_82000.1	chr9	121675109	121675309	+	1	NA	NA	NA	29820	NM_001164562	215474	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.020000	0.567164	
mm_28778.1	chr3	95989200	95989400	-	1	NA	NA	NA	3790	NR_045872	668224	Mm.357766	NR_045872		Gm9054	EG668224	predicted gene 9054	ncRNA	0.015000	0.606965	
mm_135037.1	chr16	32869860	32870060	-	1	NA	NA	NA	-1594	NM_172615	100502698	Mm.327319	NM_172615	ENSMUSG00000035629	Rubcn	1700021K19Rik|5330403K09|Kiaa0226|Rubicon|mKIAA0226	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	protein-coding	0.000000	0.398010	
mm_121721.1	chr14	16575064	16575264	-	1	NA	NA	NA	312	NM_011243	218772	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	0.055000	0.527363	
mm_110486.1	chr12	51971167	51971367	-	1	NA	NA	NA	54	NM_177171	320487	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	0.120000	0.766169	
mm_47991.1	chr5	135957485	135957685	-	1	NA	NA	NA	16891	NM_001160366	109267	Mm.332750	NM_001160366	ENSMUSG00000029699	Ssc4d	C330016E03Rik|S4D-SRCRB|SRCRB-S4D|Srcrb4d	scavenger receptor cysteine rich family, 4 domains	protein-coding	0.045000	0.537313	
mm_59363.1	chr7	25687455	25687655	+	1	NA	NA	NA	553	NM_011577	21803	Mm.248380	NM_011577	ENSMUSG00000002603	Tgfb1	TGF-beta1|TGFbeta1|Tgfb|Tgfb-1	transforming growth factor, beta 1	protein-coding	0.050000	0.631841	54(CCCTATTTAAGA,-,0.00)
mm_127348.1	chr15	100616814	100617014	+	1	NA	NA	NA	1252	NM_011873	23994	Mm.486175	NM_011873	ENSMUSG00000000346	Dazap2	AI314727|Brbp|Gcap28|Prtb|gt6-12|mKIAA0058	DAZ associated protein 2	protein-coding	0.000000	0.492537	
mm_102282.1	chr11	55398527	55398727	-	1	NA	NA	NA	21453	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.020000	0.552239	
mm_32073.1	chr4	97930335	97930535	+	1	NA	NA	NA	152809	NM_010905	18027	Mm.31274	NM_010905	ENSMUSG00000028565	Nfia	1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A	nuclear factor I/A	protein-coding	0.000000	0.308458	
mm_48632.1	chr5	145139897	145140097	-	1	NA	NA	NA	92	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.140000	0.706468	
mm_31867.1	chr4	80003384	80003584	+	1	NA	NA	NA	-830729	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.015000	0.388060	
mm_28213.1	chr3	88378647	88378847	-	1	NA	NA	NA	-46	NM_001032298	12097	Mm.425160	NM_001032298	ENSMUSG00000074486	Bglap2	BGP2|Bglap1|Bgp|Og2|mOC-B	bone gamma-carboxyglutamate protein 2	protein-coding	0.005000	0.532338	
mm_114824.1	chr13	91807687	91807887	+	1	NA	NA	NA	-91	NM_145453	69085	Mm.52356	NM_145453	ENSMUSG00000021621	Zcchc9	1810019C21Rik	zinc finger, CCHC domain containing 9	protein-coding	0.055000	0.577114	
mm_133087.1	chr16	62814749	62814949	+	1	NA	NA	NA	173	NM_026588	68159	Mm.386793	NM_026588	ENSMUSG00000047854	Stx19	A030009B12Rik	syntaxin 19	protein-coding	0.015000	0.447761	-29(AACCATAAAGGG,-,0.00)
mm_100747.1	chr11	4160125	4160325	-	1	NA	NA	NA	68	NM_177616	216516	Mm.386854	NM_177616	ENSMUSG00000051427	Ccdc157	4930562D19Rik|mKIAA1656	coiled-coil domain containing 157	protein-coding	0.070000	0.626866	
mm_135988.1	chr16	75092826	75093026	-	1	NA	NA	NA	493135	NM_001252513	320355	Mm.99517	NM_177142	ENSMUSG00000032948	Lipi	D930038D03Rik|lpd1	lipase, member I	protein-coding	0.020000	0.457711	56(TGCTCTTAAAAG,-,0.00),57(GCTCTTAAAAGA,-,0.00)
mm_116091.1	chr13	28757530	28757730	-	1	NA	NA	NA	-46757	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.015000	0.462687	-72(GTCCAGTAAAGG,-,0.00)
mm_31868.1	chr4	80003891	80004091	+	1	NA	NA	NA	-830222	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.015000	0.308458	
mm_56140.1	chr6	87745187	87745387	-	1	NA	NA	NA	14418	NM_001159697	58229	Mm.333229	NM_021418	ENSMUSG00000068263	Efcc1	Ccdc48	EF hand and coiled-coil domain containing 1	protein-coding	0.005000	0.383085	-42(GTATTTAAAAGG,-,0.00)
mm_127605.1	chr15	102407046	102407246	+	1	NA	NA	NA	830	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.010000	0.398010	-94(TCTCTTATAGTC,+,0.00)
mm_158204.1	chrX	105845834	105846034	-	1	NA	NA	NA	81457	NM_030614	80903	Mm.154768	NM_030614	ENSMUSG00000031230	Fgf16	-	fibroblast growth factor 16	protein-coding	0.000000	0.283582	
mm_98993.1	chr11	98766231	98766431	+	1	NA	NA	NA	9046	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.010000	0.592040	
mm_149919.1	chr19	26607144	26607344	+	1	NA	NA	NA	2084	NM_011416	67155	Mm.342988	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.135000	0.761194	
mm_12158.1	chr2	62046529	62046729	+	1	NA	NA	NA	114	NM_033552	94229	Mm.314497	NM_033552	ENSMUSG00000026904	Slc4a10	NCBE|mKIAA4136	solute carrier family 4, sodium bicarbonate cotransporter-like, member 10	protein-coding	0.030000	0.507463	
mm_149316.1	chr19	10784490	10784690	+	1	NA	NA	NA	43643	NR_027805	403202	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0.010000	0.517413	
mm_84262.1	chr9	62536949	62537149	-	1	NA	NA	NA	-5	NM_175484	235431	Mm.335229	NM_175484	ENSMUSG00000041729	Coro2b	CLIPINC|E130012P22Rik	coronin, actin binding protein, 2B	protein-coding	0.125000	0.761194	
mm_41622.1	chr5	96849404	96849604	+	1	NA	NA	NA	56119	NM_013470	11745	Mm.7214	NM_013470	ENSMUSG00000029484	Anxa3	Anx3	annexin A3	protein-coding	0.010000	0.477612	
mm_23511.1	chr3	60530222	60530422	+	1	NA	NA	NA	29143	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind-like 1 (Drosophila)	protein-coding	0.005000	0.313433	
mm_172563.1	chr8	109340789	109340989	-	1	NA	NA	NA	19	NR_002928	384864	Mm.390083	NR_002928		Gm1943	-	WD repeat domain 70 pseudogene	pseudo	0.070000	0.577114	
mm_110736.1	chr12	69790518	69790718	-	1	NA	NA	NA	89	NM_183294	71091	Mm.132325	NM_183294	ENSMUSG00000020990	Cdkl1	4933411O17Rik	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding	0.060000	0.671642	
mm_85329.1	chr9	102354502	102354702	-	1	NA	NA	NA	91	NM_001168296	270190	Mm.22897	NM_173447	ENSMUSG00000032537	Ephb1	9330129L11|AW488255|C130099E04Rik|Cek6|ENSMUSG00000074119|Elk|Elkh|Hek6|Net	Eph receptor B1	protein-coding	0.090000	0.656716	
mm_53477.1	chr6	134936772	134936972	+	1	NA	NA	NA	7780	NR_037955	381822	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	0.000000	0.278607	
mm_105468.1	chr11	105455183	105455383	-	1	NA	NA	NA	1452	NM_172568	632687	Mm.121570	NM_172568	ENSMUSG00000078627	March10	4933417C16Rik|AV039223|OTTMUSG00000002847|Rnf190	membrane-associated ring finger (C3HC4) 10	protein-coding	0.015000	0.462687	
mm_65296.1	chr7	24512364	24512564	-	1	NA	NA	NA	5377	NR_110958	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.020000	0.572139	
mm_9924.1	chr1	189687986	189688186	-	1	NA	NA	NA	0	NM_001081363	108000	Mm.129746	NM_001081363	ENSMUSG00000026605	Cenpf	6530404A22Rik|AI325968|CENF|Lek1|PRO1779|mitosin	centromere protein F	protein-coding	0.100000	0.686567	
mm_141736.1	chr17	34120916	34121116	-	1	NA	NA	NA	731	NM_010238	14312	Mm.3444	NM_010238	ENSMUSG00000024335	Brd2	AW228947|D17H6S113E|Frg-1|Fsrg-1|Fsrg1|Nat|Ring3|Rnf3|mKIAA4005	bromodomain containing 2	protein-coding	0.095000	0.721393	
mm_169168.1	chr13	65557842	65558042	+	1	NA	NA	NA	279088	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.005000	0.477612	
mm_14479.1	chr2	131508873	131509073	+	1	NA	NA	NA	17111	NM_001177838	228608	Mm.136586	NM_145533	ENSMUSG00000027333	Smox	B130066H01Rik|PAO|PAOh1|SMO	spermine oxidase	protein-coding	0.000000	0.467662	
mm_24092.1	chr3	87977111	87977311	+	1	NA	NA	NA	6118	NM_016701	18008	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46	nestin	protein-coding	0.000000	0.452736	
mm_48213.1	chr5	137610377	137610577	-	1	NA	NA	NA	927	NM_008788	18542	Mm.262345	NM_008788	ENSMUSG00000029718	Pcolce	Astt-2|Astt2|P14|PCPE-1	procollagen C-endopeptidase enhancer protein	protein-coding	0.035000	0.577114	
mm_129133.1	chr15	76196515	76196715	-	1	NA	NA	NA	-905	NM_201394	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.015000	0.547264	
mm_113970.1	chr13	51645642	51645842	+	1	NA	NA	NA	510	NM_025415	66197	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0.085000	0.572139	
mm_14485.1	chr2	131843030	131843230	+	1	NA	NA	NA	4526	NR_029381	414081	Mm.246905	NR_029381	ENSMUSG00000086822	5330413P13Rik	-	RIKEN cDNA 5330413P13 gene	ncRNA	0.005000	0.477612	
mm_79284.1	chr9	51062083	51062283	+	1	NA	NA	NA	14911	NM_001033534	244864	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0.010000	0.388060	
mm_130651.1	chr15	100636741	100636941	-	1	NA	NA	NA	99	NR_104338	207818	Mm.26282	NM_174992	ENSMUSG00000053559	Smagp	-	small cell adhesion glycoprotein	protein-coding	0.150000	0.776119	
mm_161277.1	chr14	15436218	15436418	-	1	NA	NA	NA	2669	NM_146052	218763	Mm.138039	NM_146052	ENSMUSG00000045201	Lrrc3b	BC019794|LRP15	leucine rich repeat containing 3B	protein-coding	0.020000	0.477612	
mm_46296.1	chr5	100429359	100429559	-	1	NA	NA	NA	76	NR_034038	100503199	Mm.392282	NR_034038	ENSMUSG00000097772	5430416N02Rik	100041797|Adapt33|Gm3514	RIKEN cDNA 5430416N02 gene	ncRNA	0.100000	0.646766	-92(GCGCCTTTAAGG,-,0.00),-91(CGCCTTTAAGGG,-,0.00),-90(GCCTTTAAGGGC,+,0.00),-90(GCCTTTAAGGGC,-,0.00),-89(CCTTTAAGGGCC,+,0.00)
mm_120884.1	chr14	75330868	75331068	+	1	NA	NA	NA	46595	NM_026083	67302	Mm.74704	NM_026083	ENSMUSG00000022000	Zc3h13	2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618	zinc finger CCCH type containing 13	protein-coding	0.025000	0.542289	
mm_15548.1	chr2	158409813	158410013	+	1	NA	NA	NA	60	NM_001291138	228850	Mm.398185	NM_177227	ENSMUSG00000027652	Ralgapb	AI507211|B230339M05Rik|p170	Ral GTPase activating protein, beta subunit (non-catalytic)	protein-coding	0.115000	0.706468	
mm_162701.1	chr10	21161245	21161445	-	1	NA	NA	NA	-361	NM_010848	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.080000	0.606965	
mm_119023.1	chr14	30009068	30009268	+	1	NA	NA	NA	168	NM_001136240	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.085000	0.681592	
mm_109661.1	chr12	113014464	113014664	+	1	NA	NA	NA	56	NM_001291444	217893	Mm.35754	NM_198165	ENSMUSG00000021143	Pacs2	6720425G15Rik|AW208651|AW489976|E230011J22|Pacs1l|mKIAA0602	phosphofurin acidic cluster sorting protein 2	protein-coding	0.170000	0.825871	
mm_103512.1	chr11	76623434	76623634	-	1	NA	NA	NA	-45795	NM_198894	109934	Mm.258939	NM_198018	ENSMUSG00000017631	Abr	-	active BCR-related gene	protein-coding	0.130000	0.796020	
mm_108291.1	chr12	79149864	79150064	+	1	NA	NA	NA	19176	NM_009705	11847	Mm.3506	NM_009705	ENSMUSG00000021125	Arg2	AII|AU022422	arginase type II	protein-coding	0.025000	0.477612	
mm_4530.1	chr1	175637787	175637987	+	1	NA	NA	NA	5694	NM_133809	98256	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	0.035000	0.467662	50(TCTTATAGAGGA,+,0.00)
mm_138379.1	chr17	35024041	35024241	+	1	NA	NA	NA	3875	NR_028258	78376	Mm.390966	NM_023893	ENSMUSG00000036185	Sapcd1	2810436B06Rik|G7d|Ng23	suppressor APC domain containing 1	protein-coding	0.005000	0.572139	
mm_15217.1	chr2	154307105	154307305	+	1	NA	NA	NA	-39	NM_001025574	433492	Mm.330682	NM_001025574	ENSMUSG00000067996	Bpifb9b	5430413K10Rik|AI413838|OTTMUSG00000015915	BPI fold containing family B, member 9B	protein-coding	0.005000	0.507463	-35(GACCTTTAAAGG,-,0.00),-34(ACCTTTAAAGGA,-,0.00),-33(CCTTTAAAGGAG,+,0.00),-11(GGCTATAAAAGG,-,0.00)
mm_87584.1	chr10	56599333	56599533	+	1	NA	NA	NA	222133	NM_010288	14609	Mm.378921	NM_010288	ENSMUSG00000050953	Gja1	AU042049|AW546267|Cnx43|Cx43|Cx43alpha1|Gja-1|Npm1|connexin43	gap junction protein, alpha 1	protein-coding	0.010000	0.407960	
mm_829.1	chr1	51289162	51289362	+	1	NA	NA	NA	136	NM_138741	20324	Mm.398690	NM_138741	ENSMUSG00000045954	Sdpr	-	serum deprivation response	protein-coding	0.005000	0.522388	-42(TCCTTTAAGAGC,-,0.00),-41(CCTTTAAGAGCA,+,0.00)
mm_149165.1	chr19	9018533	9018733	+	1	NA	NA	NA	729	NR_105786	102465190		NR_105786	ENSMUSG00000099308	Mir6367	Gm27467|mmu-mir-6367	microRNA 6367	ncRNA	0.010000	0.318408	
mm_143208.1	chr17	62870045	62870245	-	1	NA	NA	NA	11172	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.000000	0.358209	
mm_7788.1	chr1	131472525	131472725	-	1	NA	NA	NA	54736	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.005000	0.333333	
mm_167037.1	chr7	78783200	78783400	+	1	NA	NA	NA	169	NM_026498	67994	Mm.297033	NM_026498	ENSMUSG00000030611	Mrps11	0710005I03Rik|C79873	mitochondrial ribosomal protein S11	protein-coding	0.035000	0.472637	-47(GACTATTTAAGA,-,0.00)
mm_132974.1	chr16	52033834	52034034	+	1	NA	NA	NA	2385	NM_001033238	208650	Mm.328206	NM_001033238	ENSMUSG00000022637	Cblb	AI429560|AI851073|Cbl-b	Casitas B-lineage lymphoma b	protein-coding	0.005000	0.422886	2(GCTTTTAGATGA,+,0.00)
mm_71583.1	chr8	54779453	54779653	+	1	NA	NA	NA	119	NM_001253754	234267	Mm.241700	NM_153581	ENSMUSG00000031517	Gpm6a	Gpm6|M6A	glycoprotein m6a	protein-coding	0.055000	0.646766	
mm_172499.1	chr7	66542083	66542283	-	1	NA	NA	NA	-114706	NM_053080	56847	Mm.140988	NM_053080	ENSMUSG00000015134	Aldh1a3	ALDH6|RALDH3|V1	aldehyde dehydrogenase family 1, subfamily A3	protein-coding	0.025000	0.532338	
mm_111612.1	chr12	102401499	102401699	-	1	NA	NA	NA	38214	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.010000	0.477612	
mm_103338.1	chr11	74676515	74676715	-	1	NA	NA	NA	27120	NM_001081158	74148	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.010000	0.313433	-64(AGCTATAAAAAA,-,0.00)
mm_115829.1	chr13	21286710	21286910	-	1	NA	NA	NA	5876	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.005000	0.482587	
mm_13701.1	chr2	117128111	117128311	+	1	NA	NA	NA	7140	NM_033524	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.010000	0.487562	
mm_25824.1	chr3	127930888	127931088	+	1	NA	NA	NA	14817	NR_040552	329753	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	0.010000	0.378109	
mm_92835.1	chr10	81496219	81496419	-	1	NA	NA	NA	44	NM_134009	103425	Mm.302791	NM_134009	ENSMUSG00000020238	Ncln	3100002P13Rik|AW120537	nicalin	protein-coding	0.125000	0.721393	
mm_72348.1	chr8	79639672	79639872	+	1	NA	NA	NA	96	NM_001081164	73945	Mm.34348	NM_001081164	ENSMUSG00000036990	Otud4	4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046	OTU domain containing 4	protein-coding	0.145000	0.781095	
mm_4959.1	chr1	191266910	191267110	+	1	NA	NA	NA	51108	NM_025424	66208	Mm.46444	NM_025424	ENSMUSG00000037499	Nenf	1110060M21Rik|SCIRP10|Spuf	neuron derived neurotrophic factor	protein-coding	0.030000	0.547264	
mm_169130.1	chr13	58399861	58400061	-	1	NA	NA	NA	2208	NM_001301343	15387	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.010000	0.358209	5(AGCCTTTAAAAG,-,0.00),6(GCCTTTAAAAGA,-,0.00),7(CCTTTAAAAGAT,+,0.00)
mm_106755.1	chr12	4133414	4133614	+	1	NA	NA	NA	117	NM_001159536	104111	Mm.489807	NM_138305	ENSMUSG00000020654	Adcy3	AC3|mKIAA0511	adenylate cyclase 3	protein-coding	0.135000	0.776119	
mm_158242.1	chrX	106603590	106603790	-	1	NA	NA	NA	-11	NM_001281859	58861	Mm.287166	NM_021476	ENSMUSG00000052821	Cysltr1	BB147369|CysLT1R|Cyslt1	cysteinyl leukotriene receptor 1	protein-coding	0.010000	0.432836	
mm_140247.1	chr17	84181888	84182088	+	1	NA	NA	NA	5959	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.035000	0.562189	-88(CGGTTTTAAAGA,-,0.00)
mm_65633.1	chr7	27553094	27553294	-	1	NA	NA	NA	24	NM_011116	18807	Mm.6483	NM_011116	ENSMUSG00000003363	Pld3	Sam-9	phospholipase D family, member 3	protein-coding	0.065000	0.621891	
mm_134572.1	chr16	20372071	20372271	-	1	NA	NA	NA	-46767	NM_183158	224044	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.015000	0.388060	
mm_145646.1	chr18	61124149	61124349	+	1	NA	NA	NA	6781	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.035000	0.537313	
mm_170241.1	chr17	89942461	89942661	+	1	NA	NA	NA	145807	NM_001346962	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.045000	0.497512	-53(CTCCTTAAGAGG,-,0.00)
mm_152343.1	chr19	9984128	9984328	-	1	NA	NA	NA	1582	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.025000	0.477612	
mm_35917.1	chr4	53031448	53031648	-	1	NA	NA	NA	19668	NM_025623	66536	Mm.38244	NM_025623	ENSMUSG00000015247	Nipsnap3b	2700063N13Rik|Nipsnap3a	nipsnap homolog 3B (C. elegans)	protein-coding	0.005000	0.293532	
mm_98717.1	chr11	96318665	96318865	+	1	NA	NA	NA	498	NM_010459	15412	Mm.3546	NM_010459	ENSMUSG00000038692	Hoxb4	Hox-2.6	homeobox B4	protein-coding	0.040000	0.437811	
mm_158312.1	chrX	126915194	126915394	-	1	NA	NA	NA	-81290	NM_177705	237029	Mm.60998	NM_177705	ENSMUSG00000058670	4932411N23Rik	-	RIKEN cDNA 4932411N23 gene	protein-coding	0.000000	0.412935	
mm_57979.1	chr6	135729771	135729971	-	1	NA	NA	NA	70958	NR_126088	75024	Mm.399147	NR_126088	ENSMUSG00000107396	4930425L21Rik	4930473P14Rik	RIKEN cDNA 4930425L21 gene	ncRNA	0.010000	0.437811	
mm_105078.1	chr11	100820924	100821124	-	1	NA	NA	NA	1546	NM_011489	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.010000	0.497512	
mm_12332.1	chr2	69646771	69646971	+	1	NA	NA	NA	-384	NM_028284	72569	Mm.252136	NM_028284	ENSMUSG00000063145	Bbs5	1700049I01Rik|2700023J09Rik	Bardet-Biedl syndrome 5 (human)	protein-coding	0.020000	0.532338	
mm_90133.1	chr10	117719240	117719440	+	1	NA	NA	NA	-8582	NM_001288586	17246	Mm.22670	NM_010786	ENSMUSG00000020184	Mdm2	1700007J15Rik|AA415488|Mdm-2	transformed mouse 3T3 cell double minute 2	protein-coding	0.010000	0.532338	-34(CTCTATTTAAAC,-,0.00)
mm_173315.1	chrY	90735554	90735754	+	1	NA	NA	NA	19396	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.015000	0.477612	
mm_6718.1	chr1	82477994	82478194	-	1	NA	NA	NA	108755	NM_007735	12829	Mm.40253	NM_007735	ENSMUSG00000067158	Col4a4	E130010M05Rik|[a]4(IV)	collagen, type IV, alpha 4	protein-coding	0.010000	0.492537	
mm_2054.1	chr1	87440371	87440571	+	1	NA	NA	NA	-29793	NM_028473	73234	Mm.7310	NM_028473	ENSMUSG00000026258	3110079O15Rik	Snorc	RIKEN cDNA 3110079O15 gene	protein-coding	0.005000	0.522388	
mm_17896.1	chr2	35100559	35100759	-	1	NA	NA	NA	26	NM_001243102	98870	Mm.415380	NM_178885	ENSMUSG00000035875	AI182371	AI046667	expressed sequence AI182371	protein-coding	0.020000	0.422886	
mm_173069.1	chrX	135866579	135866779	+	1	NA	NA	NA	-19172	NM_001098222	70237	Mm.440847	NM_198161	ENSMUSG00000072964	Bhlhb9	2700087I09Rik	basic helix-loop-helix domain containing, class B9	protein-coding	0.030000	0.502488	-27(TTCTATAAAAGT,-,0.00)
mm_30480.1	chr3	154847332	154847532	-	1	NA	NA	NA	136299	NM_175176	209601	Mm.331454	NM_175176	ENSMUSG00000078161	Erich3	1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133	glutamate rich 3	protein-coding	0.020000	0.462687	
mm_172829.1	chr9	19601424	19601624	-	1	NA	NA	NA	17013	NM_146524	258517	Mm.377548	NM_146524	ENSMUSG00000043087	Olfr855	MOR148-1	olfactory receptor 855	protein-coding	0.060000	0.681592	
mm_161769.1	chr17	36672117	36672317	-	1	NA	NA	NA	-20	NM_177636	224756	Mm.246583	NM_177636	ENSMUSG00000037334	H2-M1	H-2M1|H2-Qa-Mb1|Mb1	histocompatibility 2, M region locus 1	protein-coding	0.010000	0.422886	
mm_15803.1	chr2	164461158	164461358	+	1	NA	NA	NA	287	NM_025575	66460	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0.125000	0.771144	
mm_141413.1	chr17	29423791	29423991	-	1	NA	NA	NA	62977	NM_001159538	26382	Mm.279187	NM_013710	ENSMUSG00000024013	Fgd2	Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2	FYVE, RhoGEF and PH domain containing 2	protein-coding	0.005000	0.328358	
mm_70963.1	chr8	27021976	27022176	+	1	NA	NA	NA	-1723	NM_153592	244373	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.015000	0.462687	
mm_49115.1	chr6	8509689	8509889	+	1	NA	NA	NA	189	NM_133236	170772	Mm.210787	NM_133236	ENSMUSG00000029638	Glcci1	2310047L21Rik|A130036A18Rik|Fam117c|Gig18|Tssn1	glucocorticoid induced transcript 1	protein-coding	0.190000	0.820896	
mm_116411.1	chr13	41486601	41486801	-	1	NA	NA	NA	659	NM_001111324	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.015000	0.407960	44(GCTTATATAGCA,+,0.00)
mm_1974.1	chr1	86525408	86525608	+	1	NA	NA	NA	-1228	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.085000	0.592040	
mm_152873.1	chr19	24477523	24477723	-	1	NA	NA	NA	-149	NM_026520	68034	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding	0.090000	0.626866	
mm_139889.1	chr17	70846411	70846611	+	1	NA	NA	NA	266	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.025000	0.517413	
mm_87618.1	chr10	57794518	57794718	+	1	NA	NA	NA	74	NM_020561	57319	Mm.2379	NM_020561	ENSMUSG00000019872	Smpdl3a	0610010C24Rik|AI529588|ASM3A|ASML3|ASML3A	sphingomyelin phosphodiesterase, acid-like 3A	protein-coding	0.040000	0.592040	
mm_24171.1	chr3	88570518	88570718	+	1	NA	NA	NA	-9053	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.030000	0.452736	
mm_67804.1	chr7	98111369	98111569	-	1	NA	NA	NA	-2221	NM_001256083	17921	Mm.1403	NM_008663	ENSMUSG00000030761	Myo7a	Hdb|Myo7|USH1B|nmf371|polka|sh-1|sh1	myosin VIIA	protein-coding	0.085000	0.696517	
mm_153703.1	chr19	44397668	44397868	-	1	NA	NA	NA	9941	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.015000	0.298507	
mm_44202.1	chr5	3657071	3657271	-	1	NA	NA	NA	167	NM_029154	75010	Mm.85064	NM_029141	ENSMUSG00000014529	Tmbim7	4930403J02Rik|4930500J03Rik|4930511M11Rik|Lfg5|Lgf5|Tmbim1b	transmembrane BAX inhibitor motif containing 7	protein-coding	0.005000	0.487562	
mm_160009.1	chr6	124931378	124931578	+	1	NA	NA	NA	90	NM_001170341	30853	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.130000	0.731343	
mm_21450.1	chr2	160650008	160650208	-	1	NA	NA	NA	4211	NM_009408	21969	Mm.217233	NM_009408	ENSMUSG00000070544	Top1	AI467334|D130064I21Rik|Top-1	topoisomerase (DNA) I	protein-coding	0.000000	0.318408	-36(TCTTTTAAACCA,+,0.00)
mm_163324.1	chr12	8008604	8008804	+	1	NA	NA	NA	31027	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.373134	
mm_151540.1	chr19	59081528	59081728	+	1	NA	NA	NA	-5559	NM_001114312	71653	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Kiaa1598|Shootin1|mKIAA1598	shootin 1	protein-coding	0.000000	0.402985	
mm_80256.1	chr9	72807107	72807307	+	1	NA	NA	NA	-67	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.125000	0.776119	
mm_69163.1	chr7	127208508	127208708	-	1	NA	NA	NA	-140	NM_144522	68449	Mm.41420	NM_144522	ENSMUSG00000042492	Tbc1d10b	1110003P22Rik|C87963	TBC1 domain family, member 10b	protein-coding	0.175000	0.791045	
mm_35518.1	chr4	41191149	41191349	-	1	NA	NA	NA	55228	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.000000	0.288557	
mm_67782.1	chr7	97413326	97413526	-	1	NA	NA	NA	4124	NM_009381	21835	Mm.28585	NM_009381	ENSMUSG00000035686	Thrsp	S14|SPOT14	thyroid hormone responsive	protein-coding	0.045000	0.547264	
mm_98023.1	chr11	85110983	85111183	+	1	NA	NA	NA	28872	NM_001029934	237898	Mm.178524	NM_001029934	ENSMUSG00000000804	Usp32	2900074J03Rik|6430526O11Rik|AW045245	ubiquitin specific peptidase 32	protein-coding	0.030000	0.507463	-33(GGGTTTTTAAAG,-,0.00),-31(GTTTTTAAAGAA,+,0.00)
mm_28509.1	chr3	92573769	92573969	-	1	NA	NA	NA	-134	NM_008412	16447	Mm.207365	NM_008412	ENSMUSG00000049128	Ivl	1110019C06Rik	involucrin	protein-coding	0.000000	0.517413	-35(AGCTAGAAAAGG,-,0.00)
mm_15213.1	chr2	154217088	154217288	+	1	NA	NA	NA	-6554	NM_144890	228802	Mm.167411	NM_144890	ENSMUSG00000038572	Bpifb5	Lplunc5	BPI fold containing family B, member 5	protein-coding	0.005000	0.572139	
mm_155826.1	chrX	100729840	100730040	+	1	NA	NA	NA	93	NM_023608	71584	Mm.283495	NM_023608	ENSMUSG00000019359	Gdpd2	9130017L10Rik|Gde3|Obdpf	glycerophosphodiester phosphodiesterase domain containing 2	protein-coding	0.025000	0.601990	
mm_91955.1	chr10	61100469	61100669	-	1	NA	NA	NA	11238	NM_025273	13180	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.015000	0.437811	
mm_81199.1	chr9	107554724	107554924	+	1	NA	NA	NA	241	NM_019713	56289	Mm.12091	NM_019713	ENSMUSG00000010067	Rassf1	123F2|AA536941|AU044980|NORE2A|RDA32|REH3P21|Rassf1A|Rassf1B|Rassf1C	Ras association (RalGDS/AF-6) domain family member 1	protein-coding	0.090000	0.636816	
mm_95127.1	chr11	34136862	34137062	+	1	NA	NA	NA	71127	NM_023907	14233	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	0.000000	0.442786	
mm_42014.1	chr5	108132744	108132944	+	1	NA	NA	NA	-70	NM_028481	73254	Mm.441231	NM_028481	ENSMUSG00000056531	Ccdc18	1700021E15Rik|4932411G06Rik|NY-SAR-41	coiled-coil domain containing 18	protein-coding	0.125000	0.711443	
mm_56199.1	chr6	88874671	88874871	-	1	NA	NA	NA	273	NM_001347327	319655	Mm.302613	NM_176973	ENSMUSG00000033152	Podxl2	D130074J02Rik|PODLX2	podocalyxin-like 2	protein-coding	0.160000	0.810945	
mm_87968.1	chr10	63429973	63430173	+	1	NA	NA	NA	-25	NM_177612	216033	Mm.444692	NM_177612	ENSMUSG00000060843	Ctnna3	4930429L08Rik|4933408A16|Catna3|Vr22	catenin (cadherin associated protein), alpha 3	protein-coding	0.130000	0.681592	
mm_140586.1	chr17	10216151	10216351	-	1	NA	NA	NA	103110	NM_021881	19317	Mm.130694	NM_021881	ENSMUSG00000062078	Qk	1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1	quaking	protein-coding	0.010000	0.487562	
mm_49311.1	chr6	18170649	18170849	+	1	NA	NA	NA	62	NM_021050	12638	Mm.15621	NM_021050	ENSMUSG00000041301	Cftr	AW495489|Abcc7	cystic fibrosis transmembrane conductance regulator	protein-coding	0.030000	0.527363	
mm_153438.1	chr19	40994039	40994239	-	1	NA	NA	NA	396	NM_008528	17060	Mm.9749	NM_008528	ENSMUSG00000061132	Blnk	BASH|Bca|Ly-57|Ly57|Lyw-57|SLP-65	B cell linker	protein-coding	0.020000	0.557214	
mm_79408.1	chr9	55149361	55149561	+	1	NA	NA	NA	92	NM_001346657	109161	Mm.207894	NM_180600	ENSMUSG00000032307	Ube2q2	3010021M21Rik	ubiquitin-conjugating enzyme E2Q family member 2	protein-coding	0.180000	0.800995	
mm_41119.1	chr5	87781710	87781910	+	1	NA	NA	NA	7360	NM_007785	12993	Mm.4908	NM_007785	ENSMUSG00000061937	Csn1s2a	Csng|PP22	casein alpha s2-like A	protein-coding	0.005000	0.457711	
mm_81893.1	chr9	119441456	119441656	+	1	NA	NA	NA	-3367	NM_001172136	208194	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	0.005000	0.333333	
mm_64370.1	chr7	142442252	142442452	+	1	NA	NA	NA	-116	NM_009405	21953	Mm.39469	NM_009405	ENSMUSG00000031097	Tnni2	-	troponin I, skeletal, fast 2	protein-coding	0.030000	0.601990	
mm_161117.1	chr12	105202073	105202273	+	1	NA	NA	NA	-249	NM_013774	27380	Mm.103652	NM_013774	ENSMUSG00000079007	Tcl1b4	AA675342	T cell leukemia/lymphoma 1B, 4	protein-coding	0.005000	0.457711	
mm_77864.1	chr9	5327130	5327330	+	1	NA	NA	NA	-18246	NM_009808	12364	Mm.42163	NM_009808	ENSMUSG00000025887	Casp12	-	caspase 12	protein-coding	0.010000	0.457711	
mm_113888.1	chr13	49188433	49188633	+	1	NA	NA	NA	986	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.015000	0.547264	
mm_1332.1	chr1	65247321	65247521	+	1	NA	NA	NA	60736	NM_001310624	18711	Mm.38370	NM_011086	ENSMUSG00000025949	Pikfyve	5230400C17Rik|Pip5k|Pip5k3|Pipk5k3|PipkIII|p235	phosphoinositide kinase, FYVE finger containing	protein-coding	0.000000	0.328358	-54(GCTTATATATGA,+,0.00)
mm_116214.1	chr13	32783901	32784101	-	1	NA	NA	NA	-2222	NM_001166030	238564	Mm.60041	NM_001166030	ENSMUSG00000044951	Mylk4	EG238564	myosin light chain kinase family, member 4	protein-coding	0.010000	0.482587	
mm_139596.1	chr17	57247980	57248180	+	1	NA	NA	NA	-391	NM_030084	78308	Mm.28468	NM_030084	ENSMUSG00000005823	Gpr108	1810015L19Rik|AA589464|C79132|Lustr2	G protein-coupled receptor 108	protein-coding	0.045000	0.502488	
mm_66805.1	chr7	47252730	47252930	-	1	NA	NA	NA	18	NM_001288801	668725	Mm.436563	NM_001177566	ENSMUSG00000074111	Mrgpra9	EG668725|MrgA9	MAS-related GPR, member A9	protein-coding	0.000000	0.388060	
mm_70915.1	chr8	25720182	25720382	+	1	NA	NA	NA	234	NR_121643	71910	Mm.385055	NM_028000	ENSMUSG00000031570	Plpp5	1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1|Ppapdc1b	phospholipid phosphatase 5	protein-coding	0.090000	0.656716	
mm_91386.1	chr10	30646971	30647171	-	1	NA	NA	NA	8796	NM_001111267	211329	Mm.297903	NM_172495	ENSMUSG00000039697	Ncoa7	9030406N13Rik	nuclear receptor coactivator 7	protein-coding	0.000000	0.223881	4(GCACTTAAAGGG,-,0.00)
mm_50989.1	chr6	63255961	63256161	+	1	NA	NA	NA	-796	NM_008167	14804	Mm.439651	NM_008167	ENSMUSG00000071424	Grid2	B230104L07Rik|GluD2|GluRdelta2|Lc|Lc<J>|MMS10-AC|Ms10ac|cpr|ho|nmf408|tpr	glutamate receptor, ionotropic, delta 2	protein-coding	0.070000	0.641791	-4(CCATTTCTAGGC,+,0.00)
mm_6830.1	chr1	84205737	84205937	-	1	NA	NA	NA	13124	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.457711	
mm_141164.1	chr17	26514663	26514863	-	1	NA	NA	NA	-6291	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.015000	0.502488	
mm_47586.1	chr5	124861802	124862002	-	1	NA	NA	NA	319	NM_144819	215707	Mm.389693	NM_144819	ENSMUSG00000037979	Ccdc92	AW050178|D5Bwg0834e	coiled-coil domain containing 92	protein-coding	0.155000	0.796020	
mm_777.1	chr1	44551613	44551813	+	1	NA	NA	NA	42	NM_028450	70676	Mm.133132	NM_027506	ENSMUSG00000056870	Gulp1	3110030A04Rik|5730529O06Rik|CED-6|Ced6|GULP|Gulp-2	GULP, engulfment adaptor PTB domain containing 1	protein-coding	0.070000	0.641791	
mm_54391.1	chr6	31220143	31220343	-	1	NA	NA	NA	-108	NR_040258	73652	Mm.441297	NR_040257	ENSMUSG00000087380	2210408F21Rik	-	RIKEN cDNA 2210408F21 gene	ncRNA	0.040000	0.616915	
mm_5022.1	chr1	193156571	193156771	+	1	NA	NA	NA	3559	NM_016851	54139	Mm.273695	NM_016851	ENSMUSG00000026638	Irf6	AI876454|E230028I05Rik|mirf6	interferon regulatory factor 6	protein-coding	0.015000	0.527363	
mm_88458.1	chr10	77560202	77560402	+	1	NA	NA	NA	-21465	NM_145925	108705	Mm.28853	NM_145925	ENSMUSG00000009291	Pttg1ip	1810010L20Rik|AI314311|AU018448|C79540	pituitary tumor-transforming 1 interacting protein	protein-coding	0.040000	0.606965	
mm_30411.1	chr3	152264874	152265074	-	1	NA	NA	NA	1346	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.045000	0.472637	
mm_33680.1	chr4	133251436	133251636	+	1	NA	NA	NA	10718	NM_016693	53608	Mm.36640	NM_016693	ENSMUSG00000028862	Map3k6	Ask2|MAPKKK6|MEKK6	mitogen-activated protein kinase kinase kinase 6	protein-coding	0.100000	0.651741	
mm_84820.1	chr9	77544796	77544996	-	1	NA	NA	NA	-44	NM_001146048	214345	Mm.28534	NM_172528	ENSMUSG00000032352	Lrrc1	A430093J20Rik|AU016091|D030059I21|mKIAA4018	leucine rich repeat containing 1	protein-coding	0.165000	0.771144	
mm_63934.1	chr7	139552846	139553046	+	1	NA	NA	NA	29851	NM_183248	14912	Mm.28308	NM_183248	ENSMUSG00000041309	Nkx6-2	Gtx|Nkx6.2	NK6 homeobox 2	protein-coding	0.005000	0.402985	
mm_142447.1	chr17	45592391	45592591	-	1	NA	NA	NA	-98	NM_022880	63959	Mm.29744	NM_022880	ENSMUSG00000023942	Slc29a1	1200014D21Rik|AA407560|ENT1	solute carrier family 29 (nucleoside transporters), member 1	protein-coding	0.030000	0.582090	-33(GCTTATAAACTG,+,0.00)
mm_26200.1	chr3	138526472	138526672	+	1	NA	NA	NA	151	NR_035481	100316706		NR_035481	ENSMUSG00000088373	Mir1956	mir-1956|mmu-mir-1956	microRNA 1956	ncRNA	0.065000	0.577114	
mm_20066.1	chr2	120403975	120404175	-	1	NA	NA	NA	41	NM_173734	211499	Mm.260712	NM_173734	ENSMUSG00000033808	Tmem87a	A930025J12Rik	transmembrane protein 87A	protein-coding	0.065000	0.557214	71(TCTTTTAGGGGC,+,0.00)
mm_24371.1	chr3	90220660	90220860	+	1	NA	NA	NA	-24	NM_026677	68328	Mm.29355	NM_026677	ENSMUSG00000027935	Rab13	0610007N03Rik|B230212B15Rik	RAB13, member RAS oncogene family	protein-coding	0.060000	0.686567	
mm_54702.1	chr6	39558063	39558263	-	1	NA	NA	NA	-329	NM_172477	209773	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.030000	0.552239	
mm_144262.1	chr18	11052522	11052722	+	1	NA	NA	NA	-55	NR_105023	68434	Mm.57626	NR_105022	ENSMUSG00000097222	1010001N08Rik	Gata6as	RIKEN cDNA 1010001N08 gene	ncRNA	0.100000	0.651741	
mm_149280.1	chr19	10607703	10607903	+	1	NA	NA	NA	2178	NM_015735	13194	Mm.289915	NM_015735	ENSMUSG00000024740	Ddb1	127kDa|AA408517|p127-Ddb1	damage specific DNA binding protein 1	protein-coding	0.005000	0.393035	-99(TTCTTTAAAAGC,-,0.00),-98(TCTTTAAAAGCT,+,0.00)
mm_130877.1	chr15	102246164	102246364	-	1	NA	NA	NA	236	NM_001042727	19411	Mm.1273	NM_011244	ENSMUSG00000001288	Rarg	Nr1b3|RAR-gamma|RARD|RARgamma2	retinoic acid receptor, gamma	protein-coding	0.080000	0.671642	
mm_30299.1	chr3	149077056	149077256	-	1	NA	NA	NA	-122521	NM_001081298	99633	Mm.9776	NM_001081298	ENSMUSG00000028184	Adgrl2	AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786	adhesion G protein-coupled receptor L2	protein-coding	0.035000	0.532338	
mm_53638.1	chr6	140621031	140621231	+	1	NA	NA	NA	-1532	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.015000	0.527363	-43(GTCTCTAAAGGA,-,0.00)
mm_143536.1	chr17	73950267	73950467	-	1	NA	NA	NA	-171	NM_011723	22436	Mm.11223	NM_011723	ENSMUSG00000024066	Xdh	XO|Xor|Xox-1|Xox1	xanthine dehydrogenase	protein-coding	0.005000	0.522388	
mm_20239.1	chr2	126321465	126321665	-	1	NA	NA	NA	169424	NM_026981	69185	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	0.010000	0.437811	
mm_141717.1	chr17	34031495	34031695	-	1	NA	NA	NA	95	NM_001077709	14977	Mm.18556	NM_008202	ENSMUSG00000024327	Slc39a7	AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|Ring5|Zip7	solute carrier family 39 (zinc transporter), member 7	protein-coding	0.110000	0.671642	
mm_59409.1	chr7	27119857	27120057	+	1	NA	NA	NA	2	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.000000	0.512438	
mm_63387.1	chr7	127223701	127223901	+	1	NA	NA	NA	-5356	NM_017461	54204	Mm.18	NM_017461	ENSMUSG00000000486	Sept1	Diff6|Pnutl3	septin 1	protein-coding	0.000000	0.492537	
mm_109720.1	chr12	116140849	116141049	+	1	NA	NA	NA	63223	NM_009511	22355	Mm.395245	NM_009511	ENSMUSG00000011171	Vipr2	VPAC2|VPAC2R|Vip2	vasoactive intestinal peptide receptor 2	protein-coding	0.005000	0.437811	
mm_73742.1	chr8	114205480	114205680	+	1	NA	NA	NA	-60	NM_173016	270097	Mm.334825	NM_173016	ENSMUSG00000046844	Vat1l	9430073I07|AI427515|mKIAA1576	vesicle amine transport protein 1 like	protein-coding	0.060000	0.597015	
mm_43353.1	chr5	135168920	135169120	+	1	NA	NA	NA	648	NM_009745	12054	Mm.405834	NM_009745	ENSMUSG00000029681	Bcl7b	-	B cell CLL/lymphoma 7B	protein-coding	0.060000	0.502488	
mm_84063.1	chr9	58200358	58200558	-	1	NA	NA	NA	1257	NM_001161535	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.025000	0.477612	
mm_73887.1	chr8	119348057	119348257	+	1	NA	NA	NA	3619	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.015000	0.422886	
mm_168466.1	chr1	148301926	148302126	-	1	NA	NA	NA	1620413	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.045000	0.616915	
mm_94187.1	chr10	128960583	128960783	-	1	NA	NA	NA	305	NM_027853	71664	Mm.337232	NM_027853	ENSMUSG00000025347	Mettl7b	0610006F02Rik|AI266817	methyltransferase like 7B	protein-coding	0.030000	0.547264	
mm_46445.1	chr5	105103741	105103941	-	1	NA	NA	NA	6451	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.005000	0.601990	
mm_61657.1	chr7	80507679	80507879	+	1	NA	NA	NA	27219	NM_007550	12144	Mm.12932	NM_007550	ENSMUSG00000030528	Blm	-	Bloom syndrome, RecQ helicase-like	protein-coding	0.070000	0.532338	
mm_167426.1	chr8	115194792	115194992	+	1	NA	NA	NA	512002	NM_001025577	17132	Mm.275549	NM_001025577	ENSMUSG00000055435	Maf	2810401A20Rik|A230108G15Rik|AW047063|c-maf	avian musculoaponeurotic fibrosarcoma oncogene homolog	protein-coding	0.020000	0.477612	
mm_4980.1	chr1	191611707	191611907	+	1	NA	NA	NA	36171	NM_001306204	77065	Mm.338175	NM_178632	ENSMUSG00000037461	Ints7	5930412E23Rik|int7	integrator complex subunit 7	protein-coding	0.020000	0.407960	
mm_11043.1	chr2	27079278	27079478	+	1	NA	NA	NA	-3	NM_029981	77794	Mm.330088	NM_029981	ENSMUSG00000036040	Adamtsl2	A930008K15Rik|tcp-1	ADAMTS-like 2	protein-coding	0.025000	0.656716	-32(AGCTATAAAGGC,-,0.00)
mm_33186.1	chr4	126139254	126139454	+	1	NA	NA	NA	-8649	NM_172145	230752	Mm.41569	NM_172145	ENSMUSG00000050212	Eva1b	2610027C15Rik|Fam176b	eva-1 homolog B (C. elegans)	protein-coding	0.015000	0.522388	61(GTCCATATAAGC,-,0.00)
mm_110838.1	chr12	72917807	72918007	-	1	NA	NA	NA	-142	NM_029444	75801	Mm.242892	NM_029444	ENSMUSG00000021098	4930447C04Rik	4921504I02Rik|A930035O15Rik|Six6OS|Six6as|Six6os1	RIKEN cDNA 4930447C04 gene	protein-coding	0.070000	0.676617	
mm_96317.1	chr11	63989618	63989818	+	1	NA	NA	NA	25492	NR_131111	78883	Mm.410764	NR_131111	ENSMUSG00000086359	9630013K17Rik	-	RIKEN cDNA 9630013K17 gene	ncRNA	0.010000	0.363184	
mm_488.1	chr1	36767320	36767520	+	1	NA	NA	NA	486	NM_001289765	22637	Mm.8038	NM_009539	ENSMUSG00000026117	Zap70	Srk|ZAP-70|mrtle|mur	zeta-chain (TCR) associated protein kinase	protein-coding	0.005000	0.542289	
mm_152445.1	chr19	10784164	10784364	-	1	NA	NA	NA	43317	NR_027805	403202	Mm.34482	NM_207529	ENSMUSG00000067577	A430093F15Rik	Gm674	RIKEN cDNA A430093F15 gene	ncRNA	0.005000	0.482587	58(TTCTATAAATAG,-,0.00),60(CTATAAATAGGC,+,0.00)
mm_133586.1	chr16	91420894	91421094	+	1	NA	NA	NA	14759	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.015000	0.472637	
mm_20172.1	chr2	122313625	122313825	-	1	NA	NA	NA	5	NM_001305262	213696	Mm.247121	NM_145395	ENSMUSG00000027224	Duoxa1	BC019755|Nip|Nip1	dual oxidase maturation factor 1	protein-coding	0.075000	0.671642	
mm_53773.1	chr6	146113257	146113457	+	1	NA	NA	NA	179210	NM_010656	16651	Mm.49689	NM_010656	ENSMUSG00000030255	Sspn	Krag	sarcospan	protein-coding	0.010000	0.477612	
mm_42840.1	chr5	122106696	122106896	+	1	NA	NA	NA	5816	NM_010861	17906	Mm.1529	NM_010861	ENSMUSG00000013936	Myl2	MLC-2|MLC-2s/v|MLC-2v|Mlc2v|Mylpc	myosin, light polypeptide 2, regulatory, cardiac, slow	protein-coding	0.020000	0.527363	
mm_118387.1	chr13	117271988	117272188	-	1	NA	NA	NA	51515	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.005000	0.273632	-85(CTCTCTAAAAAG,-,0.00)
mm_148836.1	chr19	6363588	6363788	+	1	NA	NA	NA	-2	NM_011750	22668	Mm.256422	NM_011750	ENSMUSG00000024949	Sf1	BBP|MZFM|WBP4|Zfp162	splicing factor 1	protein-coding	0.105000	0.641791	
mm_152886.1	chr19	24678531	24678731	-	1	NA	NA	NA	4623	NM_183160	226040	Mm.391170	NM_183160	ENSMUSG00000048572	Tmem252	E030010A14Rik	transmembrane protein 252	protein-coding	0.000000	0.442786	
mm_11661.1	chr2	35132121	35132321	+	1	NA	NA	NA	-13	NM_001290635	26920	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.030000	0.547264	
mm_79964.1	chr9	66350463	66350663	+	1	NA	NA	NA	113	NM_145617	235439	Mm.244179	NM_145617	ENSMUSG00000038664	Herc1	2810449H11Rik|B230218H07|D130015N03Rik|tbl	HECT and RLD domain containing E3 ubiquitin protein ligase family member 1	protein-coding	0.130000	0.666667	
mm_59024.1	chr7	19290997	19291197	+	1	NA	NA	NA	28	NM_001025364	20167	Mm.24142	NM_013648	ENSMUSG00000030401	Rtn2	MMS10-P|Ms10p|NSPLI|Nspl1	reticulon 2 (Z-band associated protein)	protein-coding	0.025000	0.577114	
mm_124022.1	chr14	76556589	76556789	-	1	NA	NA	NA	-2	NM_001160326	72661	Mm.320384	NM_001160326	ENSMUSG00000052584	Serp2	2810032E02Rik	stress-associated endoplasmic reticulum protein family member 2	protein-coding	0.100000	0.716418	
mm_87252.1	chr10	41490360	41490560	+	1	NA	NA	NA	21	NM_028430	73075	Mm.359762	NM_028430	ENSMUSG00000078451	Ppil6	2900084F20Rik	peptidylprolyl isomerase (cyclophilin)-like 6	protein-coding	0.100000	0.696517	
mm_64874.1	chr7	14436349	14436549	-	1	NA	NA	NA	2102	NM_001199306	76971	Mm.290727	NM_175250	ENSMUSG00000030378	Sult2a8	2810007J24Rik	sulfotransferase family 2A, dehydroepiandrosterone (DHEA)-preferring, member 8	protein-coding	0.005000	0.373134	
mm_71774.1	chr8	66469156	66469356	+	1	NA	NA	NA	17251	NM_025465	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.005000	0.353234	
mm_75248.1	chr8	39928031	39928231	-	1	NA	NA	NA	-285453	NM_001113326	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.393035	-92(CTGCTTAAAGGG,-,0.00),-90(GCTTAAAGGGTG,+,0.00),-8(GAGCTTTTAAGG,-,0.00),-6(GCTTTTAAGGAG,+,0.00)
mm_54305.1	chr6	29554750	29554950	-	1	NA	NA	NA	25568	NM_001252382	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.020000	0.492537	
mm_46931.1	chr5	114733200	114733400	-	1	NA	NA	NA	13785	NR_105995	102465622		NR_105995	ENSMUSG00000098656	Mir7028	Gm27674|mmu-mir-7028	microRNA 7028	ncRNA	0.045000	0.597015	
mm_130166.1	chr15	93085316	93085516	-	1	NA	NA	NA	189668	NM_001033275	223827	Mm.22819	NM_001033275	ENSMUSG00000036197	Gxylt1	Glt8d3|Gm1228|Gm87	glucoside xylosyltransferase 1	protein-coding	0.020000	0.492537	
mm_112908.1	chr13	20902955	20903155	+	1	NA	NA	NA	108942	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.417910	
mm_103261.1	chr11	71032807	71033007	-	1	NA	NA	NA	710	NM_134022	103712	Mm.27768	NM_134022		6330403K07Rik	AI415455|AV161034|UGS148	RIKEN cDNA 6330403K07 gene	protein-coding	0.050000	0.497512	
mm_23683.1	chr3	68625956	68626156	+	1	NA	NA	NA	53688	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.025000	0.353234	
mm_25449.1	chr3	108364797	108364997	+	1	NA	NA	NA	-14	NM_026831	68753	Mm.75201	NM_026831	ENSMUSG00000068745	Mybphl	1110037P11Rik	myosin binding protein H-like	protein-coding	0.010000	0.587065	
mm_120008.1	chr14	55671052	55671252	+	1	NA	NA	NA	754	NM_008683	18002	Mm.296566	NM_008683	ENSMUSG00000010376	Nedd8	Rub1	neural precursor cell expressed, developmentally down-regulated gene 8	protein-coding	0.020000	0.407960	
mm_2229.1	chr1	90915025	90915225	+	1	NA	NA	NA	25	NM_053015	171531	Mm.105208	NM_053015	ENSMUSG00000026303	Mlph	2210418F23Rik|5031433I09Rik|AW228792|D1Wsu84e|Slac-2a|l(1)-3Rk|l1Rk3|ln	melanophilin	protein-coding	0.050000	0.646766	
mm_166309.1	chr5	106445197	106445397	-	1	NA	NA	NA	12869	NM_001005477	104382	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH-like 2 (Drosophila)	protein-coding	0.010000	0.412935	
mm_36944.1	chr4	108833471	108833671	-	1	NA	NA	NA	13	NM_027453	70533	Mm.379178	NM_027453	ENSMUSG00000028568	Btf3l4	4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446	basic transcription factor 3-like 4	protein-coding	0.115000	0.761194	
mm_162354.1	chr1	56869011	56869211	-	1	NA	NA	NA	102223	NM_139146	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.010000	0.417910	
mm_32648.1	chr4	115059458	115059658	+	1	NA	NA	NA	1747	NM_001287388	21349	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.065000	0.606965	
mm_86859.1	chr10	21886534	21886734	+	1	NA	NA	NA	4450	NM_001161845	20393	Mm.28405	NM_011361	ENSMUSG00000019970	Sgk1	Sgk	serum/glucocorticoid regulated kinase 1	protein-coding	0.000000	0.388060	
mm_671.1	chr1	40465570	40465770	+	1	NA	NA	NA	49	NM_001161843	16182	Mm.253664	NM_008365	ENSMUSG00000026070	Il18r1	Il18ralpha|Il1rrp	interleukin 18 receptor 1	protein-coding	0.040000	0.636816	
mm_11741.1	chr2	38339168	38339368	+	1	NA	NA	NA	-13	NM_001290646	16870	Mm.142856	NM_010710	ENSMUSG00000000247	Lhx2	LH2A|Lh-2|Lim2|ap|apterous	LIM homeobox protein 2	protein-coding	0.165000	0.830846	
mm_106985.1	chr12	9584927	9585127	+	1	NA	NA	NA	10585	NM_011859	23967	Mm.45055	NM_011859	ENSMUSG00000048387	Osr1	Odd1|Osr	odd-skipped related 1 (Drosophila)	protein-coding	0.065000	0.616915	
mm_62949.1	chr7	119595940	119596140	+	1	NA	NA	NA	-21788	NM_054094	117147	Mm.427560	NM_054094	ENSMUSG00000033533	Acsm1	Acas3|Bucs1|Macs	acyl-CoA synthetase medium-chain family member 1	protein-coding	0.030000	0.472637	
mm_20345.1	chr2	127705650	127705850	-	1	NA	NA	NA	24147	NM_145532	228576	Mm.133036	NM_145532	ENSMUSG00000027377	Mall	BC012256|BENE	mal, T cell differentiation protein-like	protein-coding	0.025000	0.497512	
mm_44132.1	chr5	149832300	149832500	+	1	NA	NA	NA	-15347	NR_045758	70969	Mm.78499	NR_045758	ENSMUSG00000107214	4930500F04Rik	4931407C17Rik	RIKEN cDNA 4930500F04 gene	ncRNA	0.005000	0.412935	64(CCTCTTAGAGCT,+,0.00)
mm_69841.1	chr7	141327619	141327819	-	1	NA	NA	NA	6	NM_016874	54006	Mm.28392	NM_016874	ENSMUSG00000058886	Deaf1	AU042387|C230009B13Rik|NUDR	deformed epidermal autoregulatory factor 1 (Drosophila)	protein-coding	0.130000	0.696517	
mm_165852.1	chr4	11105296	11105496	+	1	NA	NA	NA	-28701	NR_030455	735261		NR_030455	ENSMUSG00000105333	Mir684-2	Mirn684-2	microRNA 684-2	ncRNA	0.010000	0.442786	
mm_64456.1	chr7	142660357	142660557	+	1	NA	NA	NA	777	NR_002855	111975	Mm.440180	NR_002855	ENSMUSG00000086266	Igf2os	Igf2as|Peg8	insulin-like growth factor 2, opposite strand	ncRNA	0.035000	0.492537	
mm_8988.1	chr1	165700898	165701098	-	1	NA	NA	NA	7096	NM_178593	226594	Mm.265552	NM_178593	ENSMUSG00000040723	Rcsd1	A430105K13Rik|BC025872|CapZIP	RCSD domain containing 1	protein-coding	0.005000	0.557214	
mm_1975.1	chr1	86526605	86526805	+	1	NA	NA	NA	-31	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.090000	0.626866	-14(CTATATTAAAGC,-,0.00)
mm_120551.1	chr14	67745167	67745367	+	1	NA	NA	NA	86	NR_133010	14714	Mm.358309	NM_008145	ENSMUSG00000015812	Gnrh1	Gnrh|Gnrh2|LHRH|Lhrh1|Lnrh|hpg	gonadotropin releasing hormone 1	protein-coding	0.020000	0.427861	-34(TCATATAAAAAG,-,0.00)
mm_119028.1	chr14	30024851	30025051	+	1	NA	NA	NA	2318	NM_175343	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.005000	0.378109	
mm_165086.1	chr19	47508860	47509060	+	1	NA	NA	NA	-4022	NR_045322	100503104	Mm.442735	NR_045322	ENSMUSG00000097990	Gm19557	-	predicted gene, 19557	ncRNA	0.010000	0.577114	
mm_56933.1	chr6	119713971	119714171	-	1	NA	NA	NA	134079	NM_053204	111173	Mm.288860	NM_053204	ENSMUSG00000030172	Erc1	4930404L01Rik|5033405M01Rik|9630025C19Rik|B430107L16Rik|CAST2|ELKS|Elks1|RAB6IP2A|RAB6IP2B|Rab6ip2|mKIAA1081	ELKS/RAB6-interacting/CAST family member 1	protein-coding	0.005000	0.388060	
mm_156907.1	chrX	169048300	169048500	+	1	NA	NA	NA	11789	NR_109847	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.005000	0.328358	
mm_107461.1	chr12	37241644	37241844	+	1	NA	NA	NA	105	NM_178767	319660	Mm.485540	NM_178767	ENSMUSG00000050103	Agmo	A530016O06Rik|AI790538|Tmem195	alkylglycerol monooxygenase	protein-coding	0.015000	0.393035	
mm_168802.1	chr12	20415539	20415739	+	1	NA	NA	NA	400140	NR_015521	69513	Mm.273972	NR_015521	ENSMUSG00000099759	1700030C10Rik	-	RIKEN cDNA 1700030C10 gene	ncRNA	0.130000	0.756219	
mm_113895.1	chr13	49195592	49195792	+	1	NA	NA	NA	8145	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.035000	0.611940	
mm_88593.1	chr10	79760930	79761130	+	1	NA	NA	NA	5911	NM_023304	67112	Mm.154211	NM_023304	ENSMUSG00000020327	Fgf22	2210414E06Rik|FGF-22	fibroblast growth factor 22	protein-coding	0.025000	0.592040	
mm_91640.1	chr10	42276551	42276751	-	1	NA	NA	NA	91	NM_019740	56484	Mm.338613	NM_019740	ENSMUSG00000048756	Foxo3	1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a	forkhead box O3	protein-coding	0.115000	0.706468	
mm_104164.1	chr11	87358826	87359026	-	1	NA	NA	NA	68	NM_177167	320472	Mm.341988	NM_177167	ENSMUSG00000046442	Ppm1e	AW049266|B930008A12Rik|POPX1|PP2CH|mKIAA1072	protein phosphatase 1E (PP2C domain containing)	protein-coding	0.095000	0.696517	
mm_105671.1	chr11	107466121	107466321	-	1	NA	NA	NA	4499	NM_145823	71795	Mm.397413	NM_145823	ENSMUSG00000040430	Pitpnc1	1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|RDGBB|RDGBB1|rdgB-beta	phosphatidylinositol transfer protein, cytoplasmic 1	protein-coding	0.005000	0.457711	
mm_88080.1	chr10	68042058	68042258	+	1	NA	NA	NA	62560	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.005000	0.378109	
mm_80670.1	chr9	90163070	90163270	+	1	NA	NA	NA	192	NM_001311115	108153	Mm.102141	NM_001003911	ENSMUSG00000032363	Adamts7	ADAM-TS7|ADAMTS7B	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7	protein-coding	0.085000	0.661692	
mm_92891.1	chr10	82858992	82859192	-	1	NA	NA	NA	-114	NM_001042513	50493	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	0.090000	0.631841	
mm_151761.1	chr19	5118281	5118481	-	1	NA	NA	NA	27	NR_045528	16594	Mm.271648	NM_008451	ENSMUSG00000024862	Klc2	8030455F02Rik|AW212649|KLC 2|KLC-2	kinesin light chain 2	protein-coding	0.100000	0.726368	-6(GCCCCTTTAAGG,-,0.00),-5(CCCCTTTAAGGC,-,0.00),-4(CCCTTTAAGGCA,+,0.00),-3(CCTTTAAGGCAG,+,0.00),68(CCTTTAAGGCGG,+,0.00)
mm_146597.1	chr18	9449956	9450156	-	1	NA	NA	NA	94	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.165000	0.726368	
mm_165717.1	chr3	101110216	101110416	-	1	NA	NA	NA	-150	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding	0.150000	0.805970	
mm_14650.1	chr2	136911137	136911337	+	1	NA	NA	NA	11886	NM_001038641	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.000000	0.328358	
mm_91918.1	chr10	60299401	60299601	-	1	NA	NA	NA	15040	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.010000	0.512438	58(GTGTTTTAAGGC,-,0.00)
mm_102430.1	chr11	59489975	59490175	-	1	NA	NA	NA	-15578	NR_135273	74476	Mm.440257	NR_015585	ENSMUSG00000072893	4933439C10Rik	2610028M21Rik	RIKEN cDNA 4933439C10 gene	ncRNA	0.010000	0.378109	
mm_169943.1	chr16	69208565	69208765	+	1	NA	NA	NA	591716	NR_130991	78110	Mm.211406	NR_130991	ENSMUSG00000107073	4930428D20Rik	-	RIKEN cDNA 4930428D20 gene	ncRNA	0.035000	0.417910	
mm_64041.1	chr7	140773535	140773735	+	1	NA	NA	NA	9803	NM_021282	13106	Mm.21758	NM_021282	ENSMUSG00000025479	Cyp2e1	Cyp2e	cytochrome P450, family 2, subfamily e, polypeptide 1	protein-coding	0.000000	0.373134	
mm_9992.1	chr1	191378011	191378211	-	1	NA	NA	NA	18930	NM_144880	226849	Mm.205569	NM_144880	ENSMUSG00000026626	Ppp2r5a	PR61alpha	protein phosphatase 2, regulatory subunit B', alpha	protein-coding	0.005000	0.318408	
mm_72270.1	chr8	75099828	75100028	+	1	NA	NA	NA	6310	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.015000	0.527363	
mm_61531.1	chr7	78920124	78920324	+	1	NA	NA	NA	5989	NM_001113527	57444	Mm.322843	NM_020583	ENSMUSG00000039236	Isg20	1600023I01Rik|2010107M23Rik|20kDa|DnaQL|HEM45	interferon-stimulated protein	protein-coding	0.015000	0.502488	
mm_90349.1	chr10	127163443	127163643	+	1	NA	NA	NA	-1613	NR_045166	14421	Mm.386762	NM_008080	ENSMUSG00000006731	B4galnt1	4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2	beta-1,4-N-acetyl-galactosaminyl transferase 1	protein-coding	0.010000	0.517413	
mm_139607.1	chr17	57303872	57304072	+	1	NA	NA	NA	24872	NM_001163815	22324	Mm.248172	NM_011691	ENSMUSG00000034116	Vav1	Vav|vav-T	vav 1 oncogene	protein-coding	0.015000	0.378109	
mm_30802.1	chr4	20008413	20008613	+	1	NA	NA	NA	184	NM_015767	50500	Mm.24375	NM_015767	ENSMUSG00000073988	Ttpa	alpha-TTP	tocopherol (alpha) transfer protein	protein-coding	0.105000	0.721393	
mm_44594.1	chr5	24995763	24995963	-	1	NA	NA	NA	-110	NM_001310480	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.020000	0.492537	-58(TCTTAAAGAGAC,+,0.00)
mm_76886.1	chr8	105637225	105637425	-	1	NA	NA	NA	787	NM_181322	13018	Mm.269474	NM_181322	ENSMUSG00000005698	Ctcf	AW108038	CCCTC-binding factor	protein-coding	0.110000	0.681592	
mm_116668.1	chr13	49205413	49205613	-	1	NA	NA	NA	10513	NM_026738	68480	Mm.3336	NM_026738	ENSMUSG00000037960	Card19	1110007C09Rik|AI851695|Bincard	caspase recruitment domain family, member 19	protein-coding	0.010000	0.542289	
mm_67057.1	chr7	67372767	67372967	-	1	NA	NA	NA	-9	NM_001291195	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.135000	0.711443	
mm_129840.1	chr15	83154435	83154635	-	1	NA	NA	NA	4890	NR_004432	104307	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.025000	0.597015	
mm_127692.1	chr15	102988191	102988391	+	1	NA	NA	NA	-2248	NM_010466	15426	Mm.6167	NM_010466	ENSMUSG00000001657	Hoxc8	D130011F21Rik|Hox-3.1	homeobox C8	protein-coding	0.010000	0.457711	31(CCCCCTAAAAGA,-,0.00)
mm_16513.1	chr2	181365425	181365625	+	1	NA	NA	NA	102	NM_001048148	229007	Mm.87720	NM_144894	ENSMUSG00000027582	Zgpat	1500006I01Rik|BC021513	zinc finger, CCCH-type with G patch domain	protein-coding	0.100000	0.696517	
mm_159600.1	chr4	127970615	127970815	-	1	NA	NA	NA	126	NM_001134733	635169	Mm.346755	NM_001134733	ENSMUSG00000028813	CK137956	-	cDNA sequence CK137956	protein-coding	0.025000	0.582090	
mm_72384.1	chr8	81558942	81559142	+	1	NA	NA	NA	216480	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.005000	0.437811	
mm_11416.1	chr2	31670628	31670828	+	1	NA	NA	NA	13	NM_144886	227715	Mm.150972	NM_144886	ENSMUSG00000039356	Exosc2	Rrp4	exosome component 2	protein-coding	0.055000	0.567164	
mm_2696.1	chr1	127774157	127774357	+	1	NA	NA	NA	93	NM_028399	72949	Mm.268672	NM_028399	ENSMUSG00000026349	Ccnt2	2900041I18Rik|C81304|CycT2|CycT2a|CycT2b	cyclin T2	protein-coding	0.110000	0.681592	
mm_127297.1	chr15	100198547	100198747	+	1	NA	NA	NA	-10611	NR_037311	100499528		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0.010000	0.547264	
mm_115073.1	chr13	101664051	101664251	+	1	NA	NA	NA	28479	NM_001024955	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphatidylinositol 3-kinase, regulatory subunit, polypeptide 1 (p85 alpha)	protein-coding	0.010000	0.492537	
mm_171622.1	chr4	154655531	154655731	-	1	NA	NA	NA	12236	NM_028513	73353	Mm.30958	NM_028513	ENSMUSG00000051276	Actrt2	1700052K15Rik|Arp-T2|Arpm2	actin-related protein T2	protein-coding	0.020000	0.482587	
mm_7291.1	chr1	97769984	97770184	-	1	NA	NA	NA	8	NM_173760	227399	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	0.090000	0.686567	
mm_149956.1	chr19	28835033	28835233	+	1	NA	NA	NA	-33	NM_009199	20510	Mm.246670	NM_009199	ENSMUSG00000024935	Slc1a1	D130048G10Rik|EAAC1|EAAC2|EAAT3|MEAAC1	solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1	protein-coding	0.135000	0.716418	
mm_38264.1	chr4	136880423	136880623	-	1	NA	NA	NA	5654	NM_009777	12260	Mm.2570	NM_009777	ENSMUSG00000036905	C1qb	-	complement component 1, q subcomponent, beta polypeptide	protein-coding	0.055000	0.557214	
mm_40344.1	chr5	45512229	45512429	+	1	NA	NA	NA	-7900	NM_025895	66999	Mm.283045	NM_025895	ENSMUSG00000015804	Med28	1500003D12Rik|AI451633|AU045690|Eg1|FKSG20|magicin	mediator complex subunit 28	protein-coding	0.005000	0.368159	-78(CCCTTTAAACTA,+,0.00)
mm_36521.1	chr4	84548298	84548498	-	1	NA	NA	NA	126688	NM_172870	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.015000	0.562189	
mm_25281.1	chr3	105525956	105526156	+	1	NA	NA	NA	67240	NM_019931	56543	Mm.44530	NM_019931	ENSMUSG00000040896	Kcnd3	AW045978|Kncd3|Kv4.3	potassium voltage-gated channel, Shal-related family, member 3	protein-coding	0.000000	0.278607	
mm_20336.1	chr2	127541333	127541533	-	1	NA	NA	NA	-16	NM_138750	192212	Mm.34171	NM_138750	ENSMUSG00000027376	Prom2	AI507243|Prom-rp	prominin 2	protein-coding	0.075000	0.701493	
mm_7300.1	chr1	97976946	97977146	-	1	NA	NA	NA	70747	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA	0.145000	0.791045	
mm_3118.1	chr1	134646456	134646656	+	1	NA	NA	NA	-125	NM_009307	20980	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194	synaptotagmin II	protein-coding	0.155000	0.786070	
mm_142531.1	chr17	46440021	46440221	-	1	NA	NA	NA	-1644	NM_144856	108114	Mm.387538	NM_144856	ENSMUSG00000067144	Slc22a7	NLT|OAT2	solute carrier family 22 (organic anion transporter), member 7	protein-coding	0.035000	0.517413	-16(ACCTTTTAAAAG,-,0.00),-15(CCTTTTAAAAGT,+,0.00)
mm_86086.1	chr9	114844631	114844831	-	1	NA	NA	NA	-579	NM_027294	70031	Mm.150064	NM_027294	ENSMUSG00000041012	Cmtm8	2700018N07Rik|AA408515|Cklfsf8	CKLF-like MARVEL transmembrane domain containing 8	protein-coding	0.035000	0.517413	
mm_43446.1	chr5	136110485	136110685	+	1	NA	NA	NA	5063	NR_106002	102465626		NR_106002	ENSMUSG00000099003	Mir7035	Gm27661|mmu-mir-7035	microRNA 7035	ncRNA	0.005000	0.477612	
mm_158929.1	chr1	63114134	63114334	-	1	NA	NA	NA	33	NM_001081436	227195	Mm.74718	NM_001081436	ENSMUSG00000040865	Ino80d	7330405I11|A430093A21Rik|BC010584|OTTMUSG00000002594	INO80 complex subunit D	protein-coding	0.150000	0.800995	
mm_4392.1	chr1	172341238	172341438	+	1	NA	NA	NA	128	NM_001039484	16513	Mm.254563	NM_020269	ENSMUSG00000044708	Kcnj10	BIR10|BIRK-1|Kir1.2|Kir4.1	potassium inwardly-rectifying channel, subfamily J, member 10	protein-coding	0.095000	0.701493	
mm_101480.1	chr11	30986180	30986380	-	1	NA	NA	NA	85	NM_026527	68044	Mm.32656	NM_026527	ENSMUSG00000020309	Chac2	-	ChaC, cation transport regulator 2	protein-coding	0.045000	0.592040	
mm_146533.1	chr18	5334701	5334901	-	1	NA	NA	NA	-362	NM_178722	240186	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.070000	0.601990	
mm_59803.1	chr7	29134882	29135082	+	1	NA	NA	NA	49	NR_045676	233046	Mm.465324	NM_145149	ENSMUSG00000030589	Rasgrp4	-	RAS guanyl releasing protein 4	protein-coding	0.025000	0.631841	
mm_23722.1	chr3	69009464	69009664	+	1	NA	NA	NA	-208	NR_029529	387175		NR_029529	ENSMUSG00000065580	Mir15b	Mirn15b|mir-15b|mmu-mir-15b	microRNA 15b	ncRNA	0.020000	0.398010	
mm_126561.1	chr15	82169820	82170020	+	1	NA	NA	NA	22651	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.020000	0.606965	
mm_31865.1	chr4	80003068	80003268	+	1	NA	NA	NA	-831045	NM_031202	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.005000	0.318408	
mm_77118.1	chr8	111258038	111258238	-	1	NA	NA	NA	1064	NM_009149	20340	Mm.276271	NM_009149	ENSMUSG00000003316	Glg1	AI593353|AW537898|CFR|CFR-1|ESL-1|MG-160|MG160|Selel	golgi apparatus protein 1	protein-coding	0.005000	0.348259	68(CCCTATAAAGTC,+,0.00)
mm_40431.1	chr5	53588863	53589063	+	1	NA	NA	NA	-1383	NM_009035	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.025000	0.482587	
mm_145185.1	chr18	49523190	49523390	+	1	NA	NA	NA	1	NR_033785	67321	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0.020000	0.522388	
mm_81985.1	chr9	121382776	121382976	+	1	NA	NA	NA	15918	NM_175114	67095	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.015000	0.537313	
mm_137221.1	chr17	24171930	24172130	+	1	NA	NA	NA	-2601	NM_009729	11984	Mm.30155	NM_009729	ENSMUSG00000024121	Atp6v0c	Atp6c|Atp6c2|Atp6l|Atpl|Atpl-rs1|PL16|VATL|Vma3	ATPase, H+ transporting, lysosomal V0 subunit C	protein-coding	0.005000	0.517413	
mm_62983.1	chr7	120203863	120204063	+	1	NA	NA	NA	-1	NM_026458	67928	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	0.100000	0.666667	
mm_139590.1	chr17	57223989	57224189	+	1	NA	NA	NA	4047	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.025000	0.542289	
mm_26555.1	chr3	146450427	146450627	+	1	NA	NA	NA	60	NM_001293672	74245	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase, di-N-acetyl-	protein-coding	0.085000	0.691542	
mm_103525.1	chr11	77046148	77046348	-	1	NA	NA	NA	31924	NR_030756	751519		NR_030756	ENSMUSG00000065518	Mir423	Mirn423|mir-423|mmu-mir-423	microRNA 423	ncRNA	0.020000	0.412935	
mm_72076.1	chr8	71568799	71568999	+	1	NA	NA	NA	-28	NM_011977	26457	Mm.38165	NM_011977	ENSMUSG00000031808	Slc27a1	FATP1|Fatp	solute carrier family 27 (fatty acid transporter), member 1	protein-coding	0.025000	0.621891	
mm_160061.1	chr7	4922210	4922410	+	1	NA	NA	NA	59	NM_201355	269854	Mm.42652	NM_201355	ENSMUSG00000035285	Nat14	BC047219	N-acetyltransferase 14	protein-coding	0.005000	0.457711	
mm_8350.1	chr1	150218739	150218939	-	1	NA	NA	NA	-53891	NR_110420	102639566	Mm.417208	NR_110420	ENSMUSG00000097754	Ptgs2os2	Gm26687|Linc-cox2|Lincrna-cox2	prostaglandin-endoperoxide synthase 2, opposite strand 2	ncRNA	0.000000	0.437811	-35(AGGTATAAAAAG,-,0.00)
mm_119531.1	chr14	47650288	47650488	+	1	NA	NA	NA	1077	NM_001347524	16709	Mm.3110	NM_008477	ENSMUSG00000021843	Ktn1	-	kinectin 1	protein-coding	0.005000	0.457711	
mm_5282.1	chr1	20617941	20618141	-	1	NA	NA	NA	16	NM_153179	241035	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	0.045000	0.502488	
mm_102694.1	chr11	65788154	65788354	-	1	NA	NA	NA	105	NM_009157	26398	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	0.150000	0.776119	
mm_153628.1	chr19	44013750	44013950	-	1	NA	NA	NA	15397	NM_001001446	226143	Mm.329866	NM_001001446	ENSMUSG00000025197	Cyp2c44	AW107714|BC034834|b2b386Clo	cytochrome P450, family 2, subfamily c, polypeptide 44	protein-coding	0.030000	0.492537	
mm_136846.1	chr17	12775123	12775323	+	1	NA	NA	NA	-5517	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.010000	0.417910	-80(GAGCTTATAAAG,-,0.00),-78(GCTTATAAAGCA,+,0.00)
mm_25189.1	chr3	103386894	103387094	+	1	NA	NA	NA	107701	NM_001079830	94093	Mm.195036	NM_053170	ENSMUSG00000033014	Trim33	8030451N04Rik|AI413936|Ecto|Tif1g	tripartite motif-containing 33	protein-coding	0.025000	0.477612	
mm_106807.1	chr12	5808184	5808384	+	1	NA	NA	NA	431782	NR_015579	72669	Mm.10434	NM_028318		2810032G03Rik	AI461720	RIKEN cDNA 2810032G03 gene	ncRNA	0.020000	0.582090	-46(GGCCAGAAAAGC,-,0.00)
mm_104680.1	chr11	97699566	97699766	-	1	NA	NA	NA	-18	NM_001163308	22658	Mm.2418	NM_009545	ENSMUSG00000018537	Pcgf2	Mel18|Rnf110|Zfp144|mel-18	polycomb group ring finger 2	protein-coding	0.035000	0.646766	
mm_140837.1	chr17	23670768	23670968	-	1	NA	NA	NA	-2740	NM_181821	353502	Mm.359030	NM_181821	ENSMUSG00000023904	Hcfc1r1	HPIP	host cell factor C1 regulator 1 (XPO1-dependent)	protein-coding	0.015000	0.537313	
mm_142184.1	chr17	36867007	36867207	-	1	NA	NA	NA	80	NM_001024134	69097	Mm.307027	NM_001024134	ENSMUSG00000050747	Trim15	1810012B10Rik	tripartite motif-containing 15	protein-coding	0.040000	0.572139	
mm_92677.1	chr10	80567808	80568008	-	1	NA	NA	NA	-6348	NM_025852	66932	Mm.1116	NM_025852	ENSMUSG00000047417	Rexo1	1700021P10Rik|2610511M11Rik|AW050347|EloA-BP1|Rex1|Tceb3bp1	REX1, RNA exonuclease 1	protein-coding	0.020000	0.542289	
mm_86758.1	chr10	19621898	19622098	+	1	NA	NA	NA	-30	NM_178258	237310	Mm.331979	NM_178258	ENSMUSG00000039760	Il22ra2	CRF2-10|CRF2-s1|CRF2X|Il-22bp	interleukin 22 receptor, alpha 2	protein-coding	0.010000	0.462687	
mm_94519.1	chr11	8773529	8773729	+	1	NA	NA	NA	-109094	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.035000	0.457711	
mm_138394.1	chr17	35051383	35051583	+	1	NA	NA	NA	1240	NM_033444	114584	Mm.29524	NM_033444	ENSMUSG00000007041	Clic1	Clcp|G6	chloride intracellular channel 1	protein-coding	0.065000	0.616915	
mm_139248.1	chr17	47734178	47734378	+	1	NA	NA	NA	-2759	NM_001161722	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.020000	0.592040	
mm_26449.1	chr3	142637405	142637605	+	1	NA	NA	NA	-13559	NR_105802	102465200		NR_105802	ENSMUSG00000098871	Mir6381	Gm27963|mmu-mir-6381	microRNA 6381	ncRNA	0.015000	0.437811	
mm_87542.1	chr10	53596792	53596992	+	1	NA	NA	NA	-69	NM_025541	66403	Mm.272989	NM_025541	ENSMUSG00000019857	Asf1a	2310079C17Rik|C79052	anti-silencing function 1A histone chaperone	protein-coding	0.080000	0.626866	
mm_54369.1	chr6	31131604	31131804	-	1	NA	NA	NA	-68611	NR_029532	387223		NR_029532	ENSMUSG00000065604	Mir29b-1	Mirn29b|Mirn29b-1|mir-29b-1	microRNA 29b-1	ncRNA	0.005000	0.407960	
mm_172878.1	chr9	44920587	44920787	-	1	NA	NA	NA	55	NM_013795	27425	Mm.14663	NM_013795	ENSMUSG00000038717	Atp5l	4933437C06Rik	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G	protein-coding	0.075000	0.616915	
mm_56041.1	chr6	86704645	86704845	-	1	NA	NA	NA	-20254	NM_025665	66618	Mm.182650	NM_025665	ENSMUSG00000001158	Snrnp27	2610209M04Rik|AI449063|AU022368|Ry1	small nuclear ribonucleoprotein 27 (U4/U6.U5)	protein-coding	0.000000	0.412935	
mm_91575.1	chr10	40128883	40129083	-	1	NA	NA	NA	13271	NM_028247	72472	Mm.186778	NM_028247	ENSMUSG00000019838	Slc16a10	2610103N14Rik|9830169E08|Mct10|PRO0813|TAT1	solute carrier family 16 (monocarboxylic acid transporters), member 10	protein-coding	0.020000	0.492537	
mm_18623.1	chr2	68565281	68565481	-	1	NA	NA	NA	-17032	NM_177651	227998	Mm.67562	NM_177651	ENSMUSG00000053896	4933409G03Rik	-	RIKEN cDNA 4933409G03 gene	protein-coding	0.015000	0.487562	
mm_154531.1	chrM	13637	13837	-	1	NA	NA	NA	NA	NA									0.005000	0.363184	
mm_63493.1	chr7	127769858	127770058	+	1	NA	NA	NA	143	NM_198424	269999	Mm.36852	NM_198424	ENSMUSG00000043964	Orai3	9930124N15|BC061259|Tmem142c	ORAI calcium release-activated calcium modulator 3	protein-coding	0.075000	0.681592	
mm_20218.1	chr2	125760293	125760493	-	1	NA	NA	NA	22477	NM_177608	70354	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.015000	0.452736	
mm_20375.1	chr2	128429292	128429492	-	1	NA	NA	NA	-41	NR_028590	100043424	Mm.297222	NR_028589		Gm14005	OTTMUSG00000015351	predicted gene 14005	ncRNA	0.020000	0.552239	
mm_118645.1	chr14	21536619	21536819	+	1	NA	NA	NA	36934	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.035000	0.507463	
mm_106243.1	chr11	117782061	117782261	-	1	NA	NA	NA	-136	NM_001195090	217356	Mm.116675	NM_181856	ENSMUSG00000050106	Tmc8	EVIN2|Ever2|mFLJ00400	transmembrane channel-like gene family 8	protein-coding	0.055000	0.681592	
mm_22850.1	chr3	28263182	28263382	+	1	NA	NA	NA	68	NM_001163009	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.035000	0.582090	63(CCATTTAAATAC,+,0.00)
mm_9705.1	chr1	179403784	179403984	-	1	NA	NA	NA	114119	NM_027188	69726	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.005000	0.457711	-43(GGCTCTTTAAGC,-,0.00),-41(CTCTTTAAGCCC,+,0.00),70(GCTCTTAGAGAG,+,0.00)
mm_94005.1	chr10	127607041	127607241	-	1	NA	NA	NA	14007	NM_008512	16971	Mm.271854	NM_008512	ENSMUSG00000040249	Lrp1	A2mr|AI316852|CD91|Lrp|b2b1554Clo	low density lipoprotein receptor-related protein 1	protein-coding	0.005000	0.447761	
mm_52066.1	chr6	97536492	97536692	+	1	NA	NA	NA	-48772	NM_001346637	232288	Mm.27789	NM_145148	ENSMUSG00000030064	Frmd4b	6030440G05Rik|C87375|GOBLIN|GRSP1|R74720	FERM domain containing 4B	protein-coding	0.005000	0.318408	
mm_132439.1	chr16	35938419	35938619	+	1	NA	NA	NA	49	NM_030253	80285	Mm.49074	NM_030253	ENSMUSG00000022906	Parp9	ARTD9|AW214463|BC003281|Bagl|Bal|PARP-9	poly (ADP-ribose) polymerase family, member 9	protein-coding	0.055000	0.587065	
mm_35817.1	chr4	46991672	46991872	-	1	NA	NA	NA	-58	NM_001081141	242425	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	0.150000	0.781095	
mm_18588.1	chr2	66440800	66441000	-	1	NA	NA	NA	20	NR_033495	100038743	Mm.330264	NR_033495		Gm13629	OTTMUSG00000013098	predicted gene 13629	ncRNA	0.020000	0.457711	
mm_24376.1	chr3	90231526	90231726	+	1	NA	NA	NA	29	NM_206924	23922	Mm.13912	NM_206924	ENSMUSG00000027937	Jtb	Gm622	jumping translocation breakpoint	protein-coding	0.110000	0.646766	
mm_92558.1	chr10	79806984	79807184	-	1	NA	NA	NA	13512	NM_001161747	18483	Mm.34650	NM_023128	ENSMUSG00000035863	Palm	-	paralemmin	protein-coding	0.025000	0.606965	
mm_117330.1	chr13	68961510	68961710	-	1	NA	NA	NA	37931	NM_153534	210044	Mm.390617	NM_153534	ENSMUSG00000021536	Adcy2	mKIAA1060	adenylate cyclase 2	protein-coding	0.000000	0.343284	
mm_145101.1	chr18	44071296	44071496	+	1	NA	NA	NA	3	NM_001013797	433180	Mm.57302	NM_001013797	ENSMUSG00000055095	Spink6	EG433180	serine peptidase inhibitor, Kazal type 6	protein-coding	0.005000	0.442786	
mm_116332.1	chr13	38037075	38037275	-	1	NA	NA	NA	186	NM_024242	71340	Mm.297130	NM_024242	ENSMUSG00000021428	Riok1	3110046C13Rik|5430416A05Rik|Ad034	RIO kinase 1 (yeast)	protein-coding	0.070000	0.601990	
mm_104225.1	chr11	88551070	88551270	-	1	NA	NA	NA	-68081	NR_131025	68397	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	0.015000	0.601990	
mm_114869.1	chr13	94057698	94057898	+	1	NA	NA	NA	2	NM_172589	218454	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.140000	0.796020	
mm_16218.1	chr2	173082705	173082905	+	1	NA	NA	NA	36720	NM_001081387	664799	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris|OTTMUSG00000016680	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.005000	0.492537	
mm_68140.1	chr7	102239861	102240061	-	1	NA	NA	NA	10157	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.040000	0.572139	
mm_156113.1	chrX	114474481	114474681	+	1	NA	NA	NA	248	NM_001290477	237010	Mm.132583	NM_172781	ENSMUSG00000025597	Klhl4	B130014A11|C130018J01Rik	kelch-like 4	protein-coding	0.035000	0.527363	
mm_35203.1	chr4	19520146	19520346	-	1	NA	NA	NA	49858	NM_027769	70568	Mm.38390	NM_027769	ENSMUSG00000028228	Cpne3	5430428M23Rik|5730450C07Rik|C85108|CPN3	copine III	protein-coding	0.000000	0.373134	
mm_45142.1	chr5	49130950	49131150	-	1	NA	NA	NA	154609	NM_001199244	80334	Mm.160172	NM_030265	ENSMUSG00000029088	Kcnip4	AV032399|Calp|Calp250|KChIP4|KChIP4a	Kv channel interacting protein 4	protein-coding	0.005000	0.308458	
mm_96083.1	chr11	60104988	60105188	+	1	NA	NA	NA	75	NM_009021	19377	Mm.296366	NM_009021	ENSMUSG00000062115	Rai1	Gt1	retinoic acid induced 1	protein-coding	0.155000	0.786070	
mm_17260.1	chr2	25983042	25983242	-	1	NA	NA	NA	140	NM_001276360	227634	Mm.36834	NM_001115076	ENSMUSG00000026933	Camsap1	9530003A05Rik|C77823|PRO2405	calmodulin regulated spectrin-associated protein 1	protein-coding	0.170000	0.820896	
mm_66986.1	chr7	63939617	63939817	-	1	NA	NA	NA	-802	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.060000	0.691542	
mm_119165.1	chr14	32029531	32029731	+	1	NA	NA	NA	528	NM_030166	78754	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	0.015000	0.587065	
mm_124894.1	chr15	10346645	10346845	+	1	NA	NA	NA	-11788	NM_001310736	268782	Mm.482244	NM_001031851	ENSMUSG00000089678	Agxt2	AI303810|AI663818	alanine-glyoxylate aminotransferase 2	protein-coding	0.000000	0.472637	
mm_87851.1	chr10	61089236	61089436	+	1	NA	NA	NA	5	NM_025273	13180	Mm.39473	NM_025273	ENSMUSG00000020098	Pcbd1	Dcoh|Pcbd|Pcd|Phs	pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1	protein-coding	0.065000	0.631841	
mm_154656.1	chrX	7841900	7842100	+	1	NA	NA	NA	-82	NM_001290537	54644	Mm.142827	NM_138604	ENSMUSG00000031154	Otud5	AA407879|AI553596|BB114028|DUBA|DXImx46e|Sfc7	OTU domain containing 5	protein-coding	0.110000	0.636816	
mm_100396.1	chr11	119390575	119390775	+	1	NA	NA	NA	203	NR_035453	100316690		NR_035453	ENSMUSG00000088015	Mir1932	mir-1932|mmu-mir-1932	microRNA 1932	ncRNA	0.060000	0.611940	
mm_136016.1	chr16	76093889	76094089	-	1	NA	NA	NA	-28624	NR_040575	78215	Mm.243885	NR_040575		4930578N18Rik	-	RIKEN cDNA 4930578N18 gene	ncRNA	0.010000	0.472637	-35(CTCTTTAAAAAG,-,0.00),-33(CTTTAAAAAGAG,+,0.00)
mm_121056.1	chr14	87416033	87416233	+	1	NA	NA	NA	-450	NM_172605	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0.055000	0.616915	
mm_7664.1	chr1	128417268	128417468	-	1	NA	NA	NA	48	NM_177445	226414	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	0.095000	0.681592	
mm_33885.1	chr4	136177847	136178047	+	1	NA	NA	NA	-2835	NM_001305399	242705	Mm.307932	NM_177733	ENSMUSG00000018983	E2f2	E2F-2	E2F transcription factor 2	protein-coding	0.015000	0.572139	
mm_92547.1	chr10	79746470	79746670	-	1	NA	NA	NA	11	NM_172551	216151	Mm.39001	NM_172551	ENSMUSG00000020329	Polrmt	1110018N15Rik|4932416K13	polymerase (RNA) mitochondrial (DNA directed)	protein-coding	0.115000	0.696517	
mm_123043.1	chr14	55590730	55590930	-	1	NA	NA	NA	191	NM_011190	19188	Mm.371573	NM_011190	ENSMUSG00000079197	Psme2	AA589371|AI788882|PA28b	proteasome (prosome, macropain) activator subunit 2 (PA28 beta)	protein-coding	0.045000	0.592040	
mm_46469.1	chr5	105123056	105123256	-	1	NA	NA	NA	-12864	NM_172777	236573	Mm.425261	NM_172777	ENSMUSG00000029298	Gbp9	-	guanylate-binding protein 9	protein-coding	0.010000	0.407960	
mm_60424.1	chr7	44476463	44476663	+	1	NA	NA	NA	6216	NR_106019	102465637		NR_106019	ENSMUSG00000098661	Mir7052	Gm27583|mmu-mir-7052	microRNA 7052	ncRNA	0.000000	0.393035	
mm_139675.1	chr17	57412419	57412619	+	1	NA	NA	NA	53833	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.477612	
mm_459.1	chr1	36307631	36307831	+	1	NA	NA	NA	-2	NM_001290727	214855	Mm.34316	NM_145996	ENSMUSG00000037447	Arid5a	D430024K22Rik|Mrf1	AT rich interactive domain 5A (MRF1-like)	protein-coding	0.115000	0.701493	
mm_54052.1	chr6	13839095	13839295	-	1	NA	NA	NA	747	NM_001330666	64450	Mm.167625	NM_145066	ENSMUSG00000048216	Gpr85	2900026B03Rik	G protein-coupled receptor 85	protein-coding	0.010000	0.363184	
mm_17863.1	chr2	34826071	34826271	-	1	NA	NA	NA	64	NM_001164770	30050	Mm.4465	NM_013890	ENSMUSG00000035949	Fbxw2	2700071L08Rik|FBW2|Fwd2|MD6	F-box and WD-40 domain protein 2	protein-coding	0.120000	0.706468	
mm_119960.1	chr14	55371354	55371554	+	1	NA	NA	NA	-107304	NM_001037938	28200	Mm.27427	NM_030686	ENSMUSG00000022210	Dhrs4	AI043103|AI790593|CR|D14Ucla2|NDRD|PHCR|PSCD|RRD|mouNRDR	dehydrogenase/reductase (SDR family) member 4	protein-coding	0.020000	0.537313	
mm_89431.1	chr10	91082992	91083192	+	1	NA	NA	NA	53	NM_026166	67454	Mm.252843	NM_026166	ENSMUSG00000019975	Ikbip	1200009F10Rik|1700023M03Rik|D18354|Ikip	IKBKB interacting protein	protein-coding	0.060000	0.651741	
mm_107186.1	chr12	25096343	25096543	+	1	NA	NA	NA	-351	NM_010496	15902	Mm.34871	NM_010496	ENSMUSG00000020644	Id2	AI255428|C78922|Idb2|bHLHb26	inhibitor of DNA binding 2	protein-coding	0.060000	0.616915	
mm_39448.1	chr5	17574378	17574578	+	1	NA	NA	NA	-338	NM_013657	20348	Mm.5071	NM_013657	ENSMUSG00000028780	Sema3c	1110036B02Rik|SemE|Semae	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C	protein-coding	0.065000	0.597015	-51(GCTTTTCAAGAG,+,0.00)
mm_76265.1	chr8	84034323	84034523	-	1	NA	NA	NA	8152	NM_016671	50931	Mm.38386	NM_016671	ENSMUSG00000005465	Il27ra	CRL1|IL-27R|Tccr|WSX-1|Wsx1|zcytor1	interleukin 27 receptor, alpha	protein-coding	0.015000	0.557214	-71(GCCTCTATAGGC,-,0.00)
mm_93619.1	chr10	117277577	117277777	-	1	NA	NA	NA	4595	NM_017372	17105	Mm.45436	NM_017372	ENSMUSG00000069516	Lyz2	AI326280|Lys|Lysm|Lyzf2|Lyzs|Lzm|Lzm-s1|Lzp	lysozyme 2	protein-coding	0.015000	0.537313	
mm_151003.1	chr19	46654523	46654723	+	1	NA	NA	NA	18377	NM_007809	13074	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.040000	0.611940	
mm_145518.1	chr18	60500169	60500369	+	1	NA	NA	NA	1714	NM_134133	106878	Mm.273197	NM_134133	ENSMUSG00000038059	Smim3	2010002N04Rik|AI195350|AW561905|Nid67|cI-41	small integral membrane protein 3	protein-coding	0.015000	0.502488	
mm_86480.1	chr10	4711580	4711780	+	1	NA	NA	NA	1522	NM_001302533	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.015000	0.467662	
mm_117096.1	chr13	59822723	59822923	-	1	NA	NA	NA	324	NM_153538	214290	Mm.233082	NM_153538	ENSMUSG00000035248	Zcchc6	6030448M23Rik|AA420405	zinc finger, CCHC domain containing 6	protein-coding	0.090000	0.686567	
mm_30083.1	chr3	138131244	138131444	-	1	NA	NA	NA	33	NM_008642	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	0.020000	0.527363	
mm_41012.1	chr5	81021486	81021686	+	1	NA	NA	NA	-7	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.070000	0.606965	
mm_46543.1	chr5	105800290	105800490	-	1	NA	NA	NA	-76178	NR_030777	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.020000	0.537313	
mm_40268.1	chr5	38546357	38546557	+	1	NA	NA	NA	15138	NM_011715	22388	Mm.2654	NM_011715	ENSMUSG00000005103	Wdr1	Aip1|D5Wsu185e|rede	WD repeat domain 1	protein-coding	0.025000	0.437811	
mm_6656.1	chr1	79923405	79923605	-	1	NA	NA	NA	-64840	NM_009255	20720	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	0.025000	0.502488	
mm_88012.1	chr10	67132270	67132470	+	1	NA	NA	NA	5112	NM_207221	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.000000	0.333333	
mm_101597.1	chr11	34718868	34719068	-	1	NA	NA	NA	64937	NM_033374	94176	Mm.380679	NM_033374	ENSMUSG00000020143	Dock2	AI662014|AW122239|CED-5|Hch|MBC	dedicator of cyto-kinesis 2	protein-coding	0.020000	0.467662	
mm_18251.1	chr2	52212671	52212871	-	1	NA	NA	NA	-78231	NR_040620	78049	Mm.243883	NR_040620		4930573O16Rik	-	RIKEN cDNA 4930573O16 gene	ncRNA	0.025000	0.502488	
mm_155282.1	chrX	61181024	61181224	+	1	NA	NA	NA	4434	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.005000	0.353234	
mm_6291.1	chr1	69768640	69768840	-	1	NA	NA	NA	-58230	NM_029160	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	0.020000	0.427861	
mm_102643.1	chr11	62731788	62731988	-	1	NA	NA	NA	-2795	NM_133208	170740	Mm.339982	NM_133208	ENSMUSG00000005267	Zfp287	B230333C16Rik|SKAT-2|Skat2|Znf287|mszf16|mszf74	zinc finger protein 287	protein-coding	0.095000	0.691542	
mm_71133.1	chr8	36993481	36993681	+	1	NA	NA	NA	6	NM_001039220	621080	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	0.055000	0.562189	
mm_114395.1	chr13	63278813	63279013	+	1	NA	NA	NA	18234	NR_045794	100504114	Mm.437070	NR_045794	ENSMUSG00000097242	Gm16907	-	predicted gene, 16907	ncRNA	0.015000	0.467662	
mm_92979.1	chr10	86693356	86693556	-	1	NA	NA	NA	7929	NR_015572	66263	Mm.392261	NR_015572		1810014B01Rik	-	RIKEN cDNA 1810014B01 gene	pseudo	0.025000	0.487562	
mm_11870.1	chr2	48988925	48989125	+	1	NA	NA	NA	39517	NM_029924	109241	Mm.440436	NM_029924	ENSMUSG00000036792	Mbd5	9430004D19Rik|AA536666|AI426407|C030040A15Rik|Gm1630|OTTMUSG00000012483	methyl-CpG binding domain protein 5	protein-coding	0.010000	0.343284	
mm_42049.1	chr5	108620123	108620323	+	1	NA	NA	NA	9554	NM_153569	231580	Mm.276647	NM_153569	ENSMUSG00000062234	Gak	D130045N16Rik	cyclin G associated kinase	protein-coding	0.010000	0.412935	
mm_91349.1	chr10	27525867	27526067	-	1	NA	NA	NA	90975	NM_008481	16773	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding	0.000000	0.328358	
mm_61328.1	chr7	68250700	68250900	+	1	NA	NA	NA	13433	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.005000	0.338308	
mm_107475.1	chr12	37880510	37880710	+	1	NA	NA	NA	-95	NM_178681	217480	Mm.126525	NM_178681	ENSMUSG00000036095	Dgkb	6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718	diacylglycerol kinase, beta	protein-coding	0.020000	0.557214	
mm_42278.1	chr5	114155360	114155560	+	1	NA	NA	NA	-10058	NM_133904	100705	Mm.81793	NM_133904	ENSMUSG00000042010	Acacb	AI597064|AW743042|Acc2|Accb	acetyl-Coenzyme A carboxylase beta	protein-coding	0.010000	0.592040	
mm_53150.1	chr6	125265422	125265622	+	1	NA	NA	NA	-3	NR_015527	73870	Mm.440681	NR_015527	ENSMUSG00000108129	4930417O13Rik	-	RIKEN cDNA 4930417O13 gene	ncRNA	0.030000	0.502488	
mm_128847.1	chr15	71727732	71727932	-	1	NA	NA	NA	6	NM_177819	70363	Mm.126450	NM_177819	ENSMUSG00000036800	Fam135b	1700010C24Rik|A830008O07Rik	family with sequence similarity 135, member B	protein-coding	0.080000	0.651741	
mm_80994.1	chr9	103422979	103423179	+	1	NA	NA	NA	-499	NR_040466	100529079	Mm.437003	NR_040466	ENSMUSG00000086236	5830418P13Rik	-	RIKEN cDNA 5830418P13 gene	ncRNA	0.040000	0.562189	
mm_90587.1	chr10	128270424	128270624	+	1	NA	NA	NA	-52	NM_019963	20847	Mm.293120	NM_019963	ENSMUSG00000040033	Stat2	1600010G07Rik|AW496480	signal transducer and activator of transcription 2	protein-coding	0.105000	0.646766	
mm_72143.1	chr8	72135208	72135408	+	1	NA	NA	NA	16	NM_001001491	326618	Mm.295124	NM_001001491	ENSMUSG00000031799	Tpm4	2610528G24Rik|Tpm4.2|Tpm4.2cy	tropomyosin 4	protein-coding	0.105000	0.731343	
mm_25725.1	chr3	122730016	122730216	+	1	NA	NA	NA	958	NM_153422	242202	Mm.134911	NM_153422	ENSMUSG00000053965	Pde5a	Cgbpde|Cn5n|PDE5a2|Pde5|Pde5a1	phosphodiesterase 5A, cGMP-specific	protein-coding	0.100000	0.701493	
mm_53636.1	chr6	140620951	140621151	+	1	NA	NA	NA	-1612	NM_178803	11569	Mm.86453	NM_009637	ENSMUSG00000030232	Aebp2	AU023766|B230313N05Rik	AE binding protein 2	protein-coding	0.025000	0.487562	37(GTCTCTAAAGGA,-,0.00)
mm_82646.1	chr9	22017617	22017817	-	1	NA	NA	NA	14729	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.020000	0.447761	
mm_416.1	chr1	34236589	34236789	+	1	NA	NA	NA	76359	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.095000	0.716418	
mm_96100.1	chr11	60468319	60468519	+	1	NA	NA	NA	-920	NM_010862	17910	Mm.89960	NM_010862	ENSMUSG00000042678	Myo15	Myo15a|sh-2|sh2	myosin XV	protein-coding	0.005000	0.567164	-92(CCCTATAAAGCC,+,0.00)
mm_164527.1	chr17	5799393	5799593	+	1	NA	NA	NA	3	NR_045080	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.020000	0.522388	
mm_92949.1	chr10	85127906	85128106	-	1	NA	NA	NA	21	NM_028832	74238	Mm.255401	NM_028832	ENSMUSG00000049038	Mterf2	1700007D05Rik|Mterfd3	mitochondrial transcription termination factor 2	protein-coding	0.030000	0.592040	
mm_62037.1	chr7	92180606	92180806	+	1	NA	NA	NA	-54264	NM_001243047	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.055000	0.611940	
mm_133783.1	chr16	95240921	95241121	+	1	NA	NA	NA	-16537	NM_001271693	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.010000	0.522388	
mm_99799.1	chr11	107547842	107548042	+	1	NA	NA	NA	-18	NM_198298	78455	Mm.272047	NM_198298	ENSMUSG00000020721	Helz	3110078M01Rik|9430093I07Rik|9630002H22Rik|AI851979|DRHC	helicase with zinc finger domain	protein-coding	0.070000	0.621891	-43(CACTTTAAAGGC,-,0.00)
mm_62310.1	chr7	100227572	100227772	+	1	NA	NA	NA	65	NM_027629	70974	Mm.440524	NM_027629	ENSMUSG00000030729	Pgm2l1	4931406N15Rik|AI553438|BM32A	phosphoglucomutase 2-like 1	protein-coding	0.125000	0.731343	
mm_27839.1	chr3	79147403	79147603	-	1	NA	NA	NA	-1628	NM_001099624	76089	Mm.31220	NM_001099624	ENSMUSG00000062232	Rapgef2	5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP	Rap guanine nucleotide exchange factor (GEF) 2	protein-coding	0.000000	0.407960	
mm_1213.1	chr1	62726859	62727059	+	1	NA	NA	NA	23642	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.010000	0.412935	
mm_75430.1	chr8	47288190	47288390	-	1	NA	NA	NA	1112	NM_001286376	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.090000	0.691542	
mm_164680.1	chr17	47010347	47010547	-	1	NA	NA	NA	85	NM_146078	224826	Mm.28234	NM_146078	ENSMUSG00000023977	Ubr2	9930021A08Rik|AI462103|AW540746|E130209G04Rik|ENSMUSG00000043296|mKIAA0349	ubiquitin protein ligase E3 component n-recognin 2	protein-coding	0.135000	0.721393	
mm_168933.1	chr12	67510625	67510825	+	1	NA	NA	NA	-288176	NM_207010	320772	Mm.227680	NM_207010	ENSMUSG00000034912	Mdga2	6720489L24Rik|9330209L04Rik|Adp|Mamdc1	MAM domain containing glycosylphosphatidylinositol anchor 2	protein-coding	0.020000	0.383085	
mm_135854.1	chr16	59600046	59600246	-	1	NA	NA	NA	-36799	NR_040564	75145	Mm.399348	NR_040564		4930547E14Rik	-	RIKEN cDNA 4930547E14 gene	ncRNA	0.015000	0.378109	-64(CCTTATCAACCC,+,0.00)
mm_87809.1	chr10	60301678	60301878	+	1	NA	NA	NA	17317	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.010000	0.477612	
mm_31277.1	chr4	45799004	45799204	+	1	NA	NA	NA	82	NM_028270	72535	Mm.331583	NM_028270	ENSMUSG00000035561	Aldh1b1	2700007F14Rik	aldehyde dehydrogenase 1 family, member B1	protein-coding	0.090000	0.666667	
mm_146986.1	chr18	34006461	34006661	-	1	NA	NA	NA	645	NM_013512	13824	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	0.100000	0.691542	
mm_141396.1	chr17	29238028	29238228	-	1	NA	NA	NA	-338	NM_153166	240058	Mm.39905	NM_153166	ENSMUSG00000024008	Cpne5	A830083G22Rik	copine V	protein-coding	0.125000	0.756219	
mm_94723.1	chr11	20647053	20647253	+	1	NA	NA	NA	15176	NM_001038625	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.020000	0.517413	
mm_86739.1	chr10	19185065	19185265	+	1	NA	NA	NA	17927	NR_038022	100504265	Mm.383417	NR_038021		Gm20139	-	predicted gene, 20139	ncRNA	0.010000	0.442786	17(GCTCAAATAGCC,+,0.00)
mm_41786.1	chr5	103722899	103723099	+	1	NA	NA	NA	-31163	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.015000	0.457711	
mm_68087.1	chr7	101896139	101896339	-	1	NA	NA	NA	-92	NM_001291348	75430	Mm.284491	NM_027532	ENSMUSG00000030649	Anapc15	3200002M19Rik|6330414C15Rik|APC15	anaphase prompoting complex C subunit 15	protein-coding	0.070000	0.587065	
mm_4692.1	chr1	180727180	180727380	+	1	NA	NA	NA	1237	NM_133225	170760	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.010000	0.402985	-75(AACTTTAAAGGG,-,0.00),-74(ACTTTAAAGGGG,+,0.00)
mm_169116.1	chr13	4982708	4982908	-	1	NA	NA	NA	-373644	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.055000	0.636816	
mm_10424.1	chr2	13582402	13582602	+	1	NA	NA	NA	8191	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.010000	0.388060	
mm_79249.1	chr9	50603798	50603998	+	1	NA	NA	NA	-3	NM_013897	30057	Mm.335149	NM_013897	ENSMUSG00000039016	Timm8b	Tim8b	translocase of inner mitochondrial membrane 8B	protein-coding	0.110000	0.616915	
mm_164189.1	chr15	77942024	77942224	-	1	NA	NA	NA	-13130	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.035000	0.557214	
mm_46368.1	chr5	103629153	103629353	-	1	NA	NA	NA	150	NM_029415	75750	Mm.7446	NM_029415	ENSMUSG00000029321	Slc10a6	8430417G17Rik|C78479|Soat	solute carrier family 10 (sodium/bile acid cotransporter family), member 6	protein-coding	0.030000	0.527363	
mm_142338.1	chr17	43569877	43570077	-	1	NA	NA	NA	1526	NM_013737	27226	Mm.9277	NM_013737	ENSMUSG00000023913	Pla2g7	PAF-AH|R75400	phospholipase A2, group VII (platelet-activating factor acetylhydrolase, plasma)	protein-coding	0.010000	0.527363	39(GGCTCTTTAAAG,-,0.00),41(CTCTTTAAAGTC,+,0.00)
mm_150562.1	chr19	39510750	39510950	+	1	NA	NA	NA	28	NM_010003	13098	Mm.42101	NM_010003	ENSMUSG00000025003	Cyp2c39	CYPIIC39	cytochrome P450, family 2, subfamily c, polypeptide 39	protein-coding	0.005000	0.422886	-34(TGCTATAAAAGG,-,0.00)
mm_109398.1	chr12	109947104	109947304	+	1	NA	NA	NA	199326	NR_037233	100499517		NR_037233	ENSMUSG00000093351	Mir3072	mir-3072|mmu-mir-3072	microRNA 3072	ncRNA	0.005000	0.577114	
mm_113373.1	chr13	33004060	33004260	+	1	NA	NA	NA	-381	NM_009256	20723	Mm.245041	NM_009256	ENSMUSG00000045827	Serpinb9	BB283241|CAP-3|CAP3|PI-9|PI9|Spi6|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 9	protein-coding	0.020000	0.417910	
mm_61816.1	chr7	87304197	87304397	+	1	NA	NA	NA	57648	NM_001285833	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	0.000000	0.368159	
mm_24746.1	chr3	95318688	95318888	+	1	NA	NA	NA	-42	NM_001320492	76893	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.020000	0.577114	
mm_96303.1	chr11	63158256	63158456	+	1	NA	NA	NA	25553	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|Tr|trembler	peripheral myelin protein 22	protein-coding	0.070000	0.597015	
mm_17971.1	chr2	37592629	37592829	-	1	NA	NA	NA	54556	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding	0.000000	0.308458	
mm_94303.1	chr11	4160413	4160613	+	1	NA	NA	NA	159	NM_026175	67465	Mm.156914	NM_026175	ENSMUSG00000002129	Sf3a1	1200014H24Rik|5930416L09Rik|AI159724	splicing factor 3a, subunit 1	protein-coding	0.100000	0.676617	
mm_10958.1	chr2	25682636	25682836	+	1	NA	NA	NA	10	NM_178036	332578	Mm.246797	NM_178036	ENSMUSG00000047356	Lcn10	9230112J07Rik	lipocalin 10	protein-coding	0.010000	0.562189	
mm_98584.1	chr11	95748492	95748692	+	1	NA	NA	NA	-475	NM_201609	268469	Mm.389038	NM_201609	ENSMUSG00000075595	Zfp652	9530033F24Rik|ZNF652	zinc finger protein 652	protein-coding	0.005000	0.527363	
mm_166468.1	chr5	142742093	142742293	-	1	NA	NA	NA	40092	NM_146257	243328	Mm.125942	NM_146257	ENSMUSG00000050822	Slc29a4	ENT4|mPMAT	solute carrier family 29 (nucleoside transporters), member 4	protein-coding	0.015000	0.542289	
mm_54166.1	chr6	23132838	23133038	-	1	NA	NA	NA	48	NM_013930	30956	Mm.18651	NM_013930	ENSMUSG00000029695	Aass	LKR|LKR/SDH|LOR|LOR/SDH|Lorsdh|SDH	aminoadipate-semialdehyde synthase	protein-coding	0.035000	0.557214	
mm_124908.1	chr15	10992270	10992470	+	1	NA	NA	NA	-8351	NM_053077	22293	Mm.138278	NM_053077	ENSMUSG00000022243	Slc45a2	Aim-1|Aim1|Dbr|Matp|Oca4|blanc-sale|bls|uw	solute carrier family 45, member 2	protein-coding	0.005000	0.283582	
mm_116881.1	chr13	55100129	55100329	-	1	NA	NA	NA	66	NM_011307	20184	Mm.259301	NM_011307	ENSMUSG00000025878	Uimc1	9430016E08Rik|D330018D10Rik|D630032M02Rik|RIP110|Rxrip110	ubiquitin interaction motif containing 1	protein-coding	0.160000	0.771144	
mm_46324.1	chr5	100798489	100798689	-	1	NA	NA	NA	11	NM_001081107	191578	Mm.21469	NM_180984	ENSMUSG00000035266	Helq	AU021725|D430018E21Rik|Hel308	helicase, POLQ-like	protein-coding	0.105000	0.671642	
mm_68635.1	chr7	118243431	118243631	-	1	NA	NA	NA	106	NM_001031814	233789	Mm.309053	NM_177180	ENSMUSG00000030655	Smg1	2610207I05Rik|5430435M13Rik|C130002K18Rik|mKIAA0421	SMG1 homolog, phosphatidylinositol 3-kinase-related kinase (C. elegans)	protein-coding	0.150000	0.771144	
mm_87117.1	chr10	33256495	33256695	+	1	NA	NA	NA	-238	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.005000	0.348259	-46(CCTTTTATAGCA,+,0.00)
mm_35184.1	chr4	15958252	15958452	-	1	NA	NA	NA	385	NM_013752	27354	Mm.20866	NM_013752	ENSMUSG00000028224	Nbn	Nbs1	nibrin	protein-coding	0.090000	0.661692	
mm_131102.1	chr16	5007224	5007424	+	1	NA	NA	NA	8	NR_045596	432995	Mm.271618	NM_001253796	ENSMUSG00000096215	Smim22	EG432995|Gm5480	small integral membrane protein 22	protein-coding	0.020000	0.636816	
mm_102203.1	chr11	54764094	54764294	-	1	NA	NA	NA	23509	NM_178626	72729	Mm.29476	NM_178626	ENSMUSG00000052298	Cdc42se2	2810404F18Rik|AA408783|AA536669|SPEC2	CDC42 small effector 2	protein-coding	0.015000	0.537313	
mm_30882.1	chr4	32247661	32247861	+	1	NA	NA	NA	-169674	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.015000	0.487562	
mm_89474.1	chr10	93516869	93517069	+	1	NA	NA	NA	23064	NM_027908	71761	Mm.244518	NM_027908	ENSMUSG00000015890	Amdhd1	1300019J08Rik	amidohydrolase domain containing 1	protein-coding	0.000000	0.507463	
mm_92511.1	chr10	78427519	78427719	-	1	NA	NA	NA	1949	NM_007793	13014	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	0.005000	0.333333	
mm_70880.1	chr8	25200361	25200561	+	1	NA	NA	NA	1081	NM_199323	320165	Mm.308452	NM_177089	ENSMUSG00000065954	Tacc1	4833447E04Rik|AA960202|B230378H13Rik	transforming, acidic coiled-coil containing protein 1	protein-coding	0.030000	0.417910	
mm_98049.1	chr11	85739812	85740012	+	1	NA	NA	NA	-20168	NR_045875	71489	Mm.442482	NR_045875	ENSMUSG00000086199	Bcas3os1	8430403D17Rik	breast carcinoma amplified sequence 3, opposite strand 1	ncRNA	0.015000	0.487562	
mm_24657.1	chr3	94478233	94478433	+	1	NA	NA	NA	38	NM_001289620	78784	Mm.44292	NM_172434	ENSMUSG00000028137	Celf3	4930415M08Rik|BRUNOL1|CAGH4|ERDA4|Tnrc4	CUGBP, Elav-like family member 3	protein-coding	0.040000	0.631841	
mm_32289.1	chr4	103114324	103114524	+	1	NA	NA	NA	34	NM_001286222	71148	Mm.288721	NM_027696	ENSMUSG00000028522	Mier1	4933425I22Rik|5830411K19Rik|er1	MEIR1 treanscription regulator	protein-coding	0.100000	0.746269	
mm_45983.1	chr5	90476419	90476619	-	1	NA	NA	NA	-14195	NM_007423	11576	Mm.358570	NM_007423	ENSMUSG00000054932	Afp	-	alpha fetoprotein	protein-coding	0.000000	0.343284	
mm_145636.1	chr18	61112660	61112860	+	1	NA	NA	NA	-4708	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.025000	0.452736	
mm_128842.1	chr15	69234895	69235095	-	1	NA	NA	NA	-35538	NR_130983	75076		NR_130983		4930504C09Rik	-	RIKEN cDNA 4930504C09 gene	ncRNA	0.005000	0.477612	
mm_16627.1	chr2	5681935	5682135	-	1	NA	NA	NA	-5989	NM_001290376	227541	Mm.191949	NM_177343	ENSMUSG00000039145	Camk1d	A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK	calcium/calmodulin-dependent protein kinase ID	protein-coding	0.010000	0.407960	
mm_31874.1	chr4	80834243	80834443	+	1	NA	NA	NA	130	NM_001282015	22178	Mm.30438	NM_031202	ENSMUSG00000005994	Tyrp1	Oca3|TRP-1|TRP1|Tyrp|b|brown|isa	tyrosinase-related protein 1	protein-coding	0.005000	0.517413	
mm_66124.1	chr7	31053462	31053662	-	1	NA	NA	NA	1291	NM_052991	56188	Mm.1491	NM_019503	ENSMUSG00000036570	Fxyd1	0610012C17Rik|1110006M24Rik|Plm|Pml	FXYD domain-containing ion transport regulator 1	protein-coding	0.010000	0.577114	
mm_29623.1	chr3	121532110	121532310	-	1	NA	NA	NA	134	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.085000	0.681592	
mm_70431.1	chr8	11555980	11556180	+	1	NA	NA	NA	15	NM_001302460	26356	Mm.25709	NM_011919	ENSMUSG00000045969	Ing1	2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b	inhibitor of growth family, member 1	protein-coding	0.090000	0.626866	-48(CTATTTATACCG,+,0.00)
mm_41380.1	chr5	90723413	90723613	+	1	NA	NA	NA	-35785	NM_009141	20311	Mm.4660	NM_009141	ENSMUSG00000029371	Cxcl5	AMCF-II|Cxcl6|ENA-78|GCP-2|LIX|Scyb5|Scyb6	chemokine (C-X-C motif) ligand 5	protein-coding	0.005000	0.388060	
mm_92067.1	chr10	62527349	62527549	-	1	NA	NA	NA	-19694	NM_011157	19073	Mm.338790	NM_011157	ENSMUSG00000020077	Srgn	Prg|Prg1|Sgc	serglycin	protein-coding	0.050000	0.557214	
mm_4523.1	chr1	175631979	175632179	+	1	NA	NA	NA	-114	NM_133809	98256	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	0.020000	0.422886	
mm_60629.1	chr7	44748817	44749017	+	1	NA	NA	NA	288	NM_133945	101568	Mm.28816	NM_133945	ENSMUSG00000002205	Vrk3	AI428238	vaccinia related kinase 3	protein-coding	0.035000	0.582090	
mm_17438.1	chr2	27596270	27596470	-	1	NA	NA	NA	-80831	NM_011305	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.005000	0.606965	
mm_132209.1	chr16	32608882	32609082	+	1	NA	NA	NA	86	NM_011638	22042	Mm.28683	NM_011638	ENSMUSG00000022797	Tfrc	2610028K12Rik|CD71|E430033M20Rik|Mtvr1|TFR|TFR1|TR|Trfr|p90	transferrin receptor	protein-coding	0.095000	0.656716	
mm_125622.1	chr15	61988069	61988269	+	1	NA	NA	NA	2828	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.080000	0.651741	
mm_34108.1	chr4	139192880	139193080	+	1	NA	NA	NA	81	NM_001037761	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.095000	0.751244	
mm_25200.1	chr3	103787394	103787594	+	1	NA	NA	NA	3781	NM_001301306	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.015000	0.462687	
mm_25786.1	chr3	126780302	126780502	+	1	NA	NA	NA	162984	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.015000	0.537313	
mm_141761.1	chr17	34269144	34269344	-	1	NA	NA	NA	6017	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.015000	0.532338	
mm_83028.1	chr9	37255287	37255487	-	1	NA	NA	NA	351	NM_020258	56857	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.085000	0.686567	
mm_54848.1	chr6	42589769	42589969	-	1	NA	NA	NA	7503	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.010000	0.462687	
mm_155982.1	chrX	106127015	106127215	+	1	NA	NA	NA	-16160	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.015000	0.268657	
mm_34016.1	chr4	137994694	137994894	+	1	NA	NA	NA	1338	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.020000	0.477612	47(CTTTTTTAAAGG,-,0.00),48(TTTTTTAAAGGG,+,0.00)
mm_57991.1	chr6	136172218	136172418	-	1	NA	NA	NA	1193	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.085000	0.651741	
mm_16355.1	chr2	174427395	174427595	+	1	NA	NA	NA	11544	NM_022325	64138	Mm.156919	NM_022325	ENSMUSG00000016256	Ctsz	AI787083|AU019819|CTSX|D2Wsu143e	cathepsin Z	protein-coding	0.015000	0.447761	
mm_24176.1	chr3	88575814	88576014	+	1	NA	NA	NA	-3757	NM_025448	66256	Mm.7091	NM_025448	ENSMUSG00000041355	Ssr2	1500032E05Rik|AI315033|AU020133|TLAP|TRAPB|TRAPbeta	signal sequence receptor, beta	protein-coding	0.010000	0.527363	
mm_148830.1	chr19	6341670	6341870	+	1	NA	NA	NA	610	NR_117093	26412	Mm.25860	NM_009006	ENSMUSG00000024948	Map4k2	AI385662|BL44|GCK|Rab8ip	mitogen-activated protein kinase kinase kinase kinase 2	protein-coding	0.030000	0.552239	
mm_45877.1	chr5	88328065	88328265	-	1	NA	NA	NA	10853	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.010000	0.502488	
mm_9488.1	chr1	173729218	173729418	-	1	NA	NA	NA	12491	NM_001204910	226691	Mm.440876	NM_001204910	ENSMUSG00000073490	Ifi207	AI607873|Pyhin-A	interferon activated gene 207	protein-coding	0.000000	0.472637	
mm_34323.1	chr4	141844205	141844405	+	1	NA	NA	NA	-16	NR_040641	69139	Mm.491056	NR_040641	ENSMUSG00000086818	Ctrcos	1810035I16Rik	chymotrypsin C (caldecrin), opposite strand	ncRNA	0.010000	0.557214	
mm_125904.1	chr15	75981950	75982150	+	1	NA	NA	NA	235	NM_001163518	223648	Mm.17610	NM_146059	ENSMUSG00000098176	Ccdc166	2410075B13Rik	coiled-coil domain containing 166	protein-coding	0.130000	0.626866	
mm_122962.1	chr14	54970649	54970849	-	1	NA	NA	NA	1962	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.005000	0.477612	
mm_7933.1	chr1	133912232	133912432	-	1	NA	NA	NA	-4333	NM_001160420	269120	Mm.59985	NM_054076	ENSMUSG00000010311	Optc	-	opticin	protein-coding	0.015000	0.532338	
mm_116460.1	chr13	43304204	43304404	-	1	NA	NA	NA	-132	NM_001033399	328232	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	0.110000	0.726368	
mm_5278.1	chr1	20511605	20511805	-	1	NA	NA	NA	106352	NM_153179	241035	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	0.010000	0.288557	
mm_147055.1	chr18	34940788	34940988	-	1	NA	NA	NA	-8885	NM_144866	225363	Mm.329353	NM_144866	ENSMUSG00000024360	Etf1	AI463371|D6Ertd109e|ERF|ERF1|SUP45L1|TB3-1	eukaryotic translation termination factor 1	protein-coding	0.005000	0.402985	
mm_150011.1	chr19	29334302	29334502	+	1	NA	NA	NA	268	NM_011272	19773	Mm.5033	NM_011272	ENSMUSG00000039097	Rln1	Rln|rlx	relaxin 1	protein-coding	0.040000	0.582090	
mm_144954.1	chr18	37812784	37812984	+	1	NA	NA	NA	-2195	NM_033582	93707	Mm.247203	NM_033582	ENSMUSG00000023036	Pcdhgc4	-	protocadherin gamma subfamily C, 4	protein-coding	0.005000	0.452736	
mm_36905.1	chr4	107923413	107923613	-	1	NA	NA	NA	76	NM_009949	12896	Mm.307620	NM_009949	ENSMUSG00000028607	Cpt2	AI323697|CPTII	carnitine palmitoyltransferase 2	protein-coding	0.095000	0.681592	
mm_170585.1	chr19	5798851	5799051	-	1	NA	NA	NA	-2970	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.030000	0.447761	
mm_46094.1	chr5	92347132	92347332	-	1	NA	NA	NA	1657	NM_021274	15945	Mm.877	NM_021274	ENSMUSG00000034855	Cxcl10	C7|CRG-2|INP10|IP-10|IP10|Ifi10|Scyb10|gIP-10|mob-1	chemokine (C-X-C motif) ligand 10	protein-coding	0.010000	0.522388	
mm_73177.1	chr8	95056590	95056790	+	1	NA	NA	NA	1587	NM_001042715	330830	Mm.277112	NM_001042715	ENSMUSG00000031786	Drc7	Ccdc135|Gm770|SRG-L|SRG-S	dynein regulatory complex subunit 7	protein-coding	0.020000	0.562189	
mm_161313.1	chr14	43347711	43347911	-	1	NA	NA	NA	0	NM_027940	71826	Mm.335855	NM_027940	ENSMUSG00000095384	1700001F09Rik	Gm10377	RIKEN cDNA 1700001F09 gene	protein-coding	0.000000	0.457711	
mm_107274.1	chr12	29533385	29533585	+	1	NA	NA	NA	-1420	NM_001093776	17933	Mm.253067	NM_008666	ENSMUSG00000061911	Myt1l	2900046C06Rik|2900093J19Rik|C630034G21Rik|Nztf1|Pmng1|Png-1|mKIAA1106	myelin transcription factor 1-like	protein-coding	0.020000	0.562189	64(TTCCTTTAAAGG,-,0.00),65(TCCTTTAAAGGT,+,0.00),66(CCTTTAAAGGTG,+,0.00)
mm_68888.1	chr7	126447938	126448138	-	1	NA	NA	NA	15035	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.005000	0.552239	
mm_79631.1	chr9	59486656	59486856	+	1	NA	NA	NA	-382	NM_019927	23806	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	0.135000	0.711443	
mm_163187.1	chr11	94677268	94677468	-	1	NA	NA	NA	125	NM_145828	217119	Mm.100638	NM_145828	ENSMUSG00000020868	Xylt2	E030002B02Rik|XT-II|XT2|xylT-II	xylosyltransferase II	protein-coding	0.125000	0.736318	
mm_122736.1	chr14	53863219	53863419	-	1	NA	NA	NA	390610	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.015000	0.432836	
mm_1474.1	chr1	70568855	70569055	+	1	NA	NA	NA	-156760	NM_177164	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding	0.005000	0.293532	
mm_13868.1	chr2	119799643	119799843	+	1	NA	NA	NA	229	NM_019392	22174	Mm.2901	NM_019392	ENSMUSG00000027298	Tyro3	AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1	TYRO3 protein tyrosine kinase 3	protein-coding	0.160000	0.835821	
mm_25654.1	chr3	121531496	121531696	+	1	NA	NA	NA	748	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.010000	0.412935	
mm_78315.1	chr9	23400912	23401112	+	1	NA	NA	NA	177936	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.005000	0.358209	
mm_117439.1	chr13	74734101	74734301	-	1	NA	NA	NA	60	NM_001301158	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.015000	0.527363	
mm_19447.1	chr2	91982817	91983017	-	1	NA	NA	NA	-19354	NM_138306	104418	Mm.314923	NM_138306	ENSMUSG00000040479	Dgkz	E130307B02Rik|ENSMUSG00000075035|F730209L11Rik|mDGK[z]	diacylglycerol kinase zeta	protein-coding	0.025000	0.621891	
mm_148716.1	chr19	5815272	5815472	+	1	NA	NA	NA	-12700	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.010000	0.452736	
mm_69197.1	chr7	127345496	127345696	-	1	NA	NA	NA	-282	NM_146202	233890	Mm.23031	NM_146202	ENSMUSG00000047371	Zfp768	BC026432|Znf768	zinc finger protein 768	protein-coding	0.090000	0.731343	
mm_158943.1	chr1	81076918	81077118	+	1	NA	NA	NA	-299	NM_172849	241134	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	0.010000	0.477612	
mm_40545.1	chr5	58035289	58035489	+	1	NA	NA	NA	317308	NM_018764	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.000000	0.348259	55(TTTTTTAAAGTC,+,0.00)
mm_134796.1	chr16	24199810	24200010	-	1	NA	NA	NA	-193440	NM_178665	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.025000	0.462687	
mm_137397.1	chr17	25828709	25828909	+	1	NA	NA	NA	-234	NM_028101	72106	Mm.277599	NM_028101	ENSMUSG00000025736	Jmjd8	2610003J06Rik	jumonji domain containing 8	protein-coding	0.030000	0.487562	
mm_166616.1	chr6	71396011	71396211	-	1	NA	NA	NA	22684	NM_001081110	12525	Mm.1858	NM_009857	ENSMUSG00000053977	Cd8a	BB154331|Ly-2|Ly-35|Ly-B|Lyt-2	CD8 antigen, alpha chain	protein-coding	0.000000	0.467662	
mm_115804.1	chr13	19358043	19358243	-	1	NA	NA	NA	37670	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.015000	0.527363	
mm_69754.1	chr7	140956206	140956406	-	1	NA	NA	NA	-345	NM_030694	80876	Mm.379266	NM_030694	ENSMUSG00000060591	Ifitm2	DSPA2c|Ifitm3l|fragilis3|mil-3	interferon induced transmembrane protein 2	protein-coding	0.000000	0.542289	
mm_30579.1	chr4	5152950	5153150	+	1	NA	NA	NA	-359744	NM_177730	242291	Mm.218889	NM_177730	ENSMUSG00000066324	Impad1	1110001C20Rik|AA408880|AI451589|AL022796|B230207P20|Jaws|gPAPP	inositol monophosphatase domain containing 1	protein-coding	0.000000	0.343284	
mm_74540.1	chr8	9976176	9976376	-	1	NA	NA	NA	47	NM_176953	319583	Mm.80584	NM_176953	ENSMUSG00000049717	Lig4	5830471N16Rik|tiny	ligase IV, DNA, ATP-dependent	protein-coding	0.080000	0.666667	
mm_2529.1	chr1	106934387	106934587	+	1	NA	NA	NA	38	NM_027971	71869	Mm.321740	NM_027971	ENSMUSG00000059956	Serpinb12	2300003F07Rik|4833409F13Rik	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12	protein-coding	0.010000	0.422886	
mm_113512.1	chr13	37778353	37778553	+	1	NA	NA	NA	-47585	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.085000	0.691542	
mm_75047.1	chr8	32820182	32820382	-	1	NA	NA	NA	129744	NM_001177589	100042715	Mm.291093	NM_001177589		Gm3985	-	predicted gene 3985	protein-coding	0.005000	0.402985	-20(TCTTTTAAGGAG,+,0.00)
mm_142316.1	chr17	42876585	42876785	-	1	NA	NA	NA	-261	NM_009847	12488	Mm.218637	NM_009847	ENSMUSG00000061665	Cd2ap	AL024079|C78928|METS-1|Mets1	CD2-associated protein	protein-coding	0.145000	0.746269	
mm_62423.1	chr7	101324304	101324504	+	1	NA	NA	NA	3085	NM_019990	56018	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	0.010000	0.472637	
mm_51161.1	chr6	70723787	70723987	+	1	NA	NA	NA	68288	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.457711	
mm_35194.1	chr4	16145647	16145847	-	1	NA	NA	NA	17896	NM_138952	192656	Mm.112765	NM_138952	ENSMUSG00000041135	Ripk2	2210420D18Rik|CARD3|CARDIAK|CCK|D4Bwg0615e|RICK|RIP2	receptor (TNFRSF)-interacting serine-threonine kinase 2	protein-coding	0.000000	0.472637	
mm_120171.1	chr14	60784587	60784787	+	1	NA	NA	NA	121	NR_040642	70478	Mm.274650	NM_027436	ENSMUSG00000021993	Mipep	5730405E07Rik|MIP	mitochondrial intermediate peptidase	protein-coding	0.145000	0.776119	
mm_5311.1	chr1	22509286	22509486	-	1	NA	NA	NA	-76543	NM_183018	116837	Mm.60061	NM_053270	ENSMUSG00000041670	Rims1	C030033M19Rik|RIM1|RIM1a|RIM1alpha|Rab3ip1|Rim|Serg1|mKIAA0340	regulating synaptic membrane exocytosis 1	protein-coding	0.010000	0.492537	
mm_42285.1	chr5	114323252	114323452	+	1	NA	NA	NA	8411	NM_001164573	231646	Mm.238285	NM_146163	ENSMUSG00000066952	Myo1h	4631401O15Rik	myosin 1H	protein-coding	0.070000	0.562189	
mm_77818.1	chr9	3335048	3335248	+	1	NA	NA	NA	-83	NM_026303	67667	Mm.116968	NM_026303	ENSMUSG00000025899	Alkbh8	4930562C03Rik|8030431D03Rik|9430088N01Rik|Abh8	alkB homolog 8, tRNA methyltransferase	protein-coding	0.010000	0.452736	
mm_14556.1	chr2	133856850	133857050	+	1	NA	NA	NA	292242	NR_037273	100526500		NR_037273	ENSMUSG00000093338	Mir3090	mmu-mir-3090	microRNA 3090	ncRNA	0.015000	0.467662	
mm_118499.1	chr14	13454038	13454238	+	1	NA	NA	NA	180	NM_001163032	72003	Mm.317515	NM_028052	ENSMUSG00000056296	Synpr	1500003F20Rik|SPO	synaptoporin	protein-coding	0.000000	0.467662	
mm_157909.1	chrX	78465111	78465311	-	1	NA	NA	NA	95568	NM_001177966	74910	Mm.159364	NM_001177966	ENSMUSG00000035651	4930480E11Rik	-	RIKEN cDNA 4930480E11 gene	protein-coding	0.000000	0.253731	
mm_12005.1	chr2	57267261	57267461	+	1	NA	NA	NA	28979	NM_010274	14571	Mm.3711	NM_010274	ENSMUSG00000026827	Gpd2	AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38	glycerol phosphate dehydrogenase 2, mitochondrial	protein-coding	0.015000	0.487562	
mm_5978.1	chr1	57970011	57970211	-	1	NA	NA	NA	-27	NM_001159865	51960	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding	0.140000	0.736318	
mm_143165.1	chr17	57225192	57225392	-	1	NA	NA	NA	2844	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.015000	0.462687	-59(GACTCTAAAGAG,-,0.00)
mm_126925.1	chr15	91672994	91673194	+	1	NA	NA	NA	-130	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.095000	0.661692	
mm_130066.1	chr15	89196349	89196549	-	1	NA	NA	NA	25	NM_027081	69440	Mm.482128	NM_027081	ENSMUSG00000015377	Dennd6b	1700027J05Rik|AI414881|Fam116b	DENN/MADD domain containing 6B	protein-coding	0.105000	0.726368	
mm_27683.1	chr3	65958144	65958344	-	1	NA	NA	NA	-19	NM_019937	56706	Mm.175612	NM_019937	ENSMUSG00000027829	Ccnl1	2610030E23Rik|AU018493|Ccnl|ania-6a	cyclin L1	protein-coding	0.165000	0.716418	
mm_88445.1	chr10	77547725	77547925	+	1	NA	NA	NA	17477	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.015000	0.412935	
mm_15731.1	chr2	164236842	164237042	+	1	NA	NA	NA	1399	NM_017390	53878	Mm.99395	NM_017390	ENSMUSG00000040132	Svs2	BB115391|Semg1|SvsII	seminal vesicle secretory protein 2	protein-coding	0.025000	0.398010	30(TCCTTTATAGGA,+,0.00)
mm_18585.1	chr2	66409840	66410040	-	1	NA	NA	NA	30897	NM_018733	20265	Mm.439704	NM_018733	ENSMUSG00000064329	Scn1a	B230332M13|Nav1.1	sodium channel, voltage-gated, type I, alpha	protein-coding	0.035000	0.482587	-62(GCCCCTATGAGG,-,0.00)
mm_148639.1	chr19	5474825	5475025	+	1	NA	NA	NA	190	NM_001164352	58859	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	0.070000	0.691542	
mm_69036.1	chr7	126798695	126798895	-	1	NA	NA	NA	383	NM_001177307	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.070000	0.562189	
mm_80321.1	chr9	74952983	74953183	+	1	NA	NA	NA	30	NM_001113283	235493	Mm.208955	NM_153584	ENSMUSG00000034858	Fam214a	6330415I01Rik|AI553555|C130047D21Rik|Kiaa1370|mKIAA1370	family with sequence similarity 214, member A	protein-coding	0.160000	0.771144	
mm_135905.1	chr16	67197440	67197640	-	1	NA	NA	NA	423368	NM_001347247	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.005000	0.273632	
mm_120810.1	chr14	75015961	75016161	+	1	NA	NA	NA	34	NM_198642	271221	Mm.320280	NM_198642	ENSMUSG00000034959	Rubcnl	5031414D18Rik|Gm744|Gm911|Kiaa0226l	RUN and cysteine rich domain containing beclin 1 interacting protein like	protein-coding	0.055000	0.547264	
mm_28331.1	chr3	89382833	89383033	-	1	NA	NA	NA	-8931	NR_040403	545539	Mm.393389	NR_040403	ENSMUSG00000074466	Gm15417	ENSMUSG00000074466|OTTMUSG00000021274	predicted gene 15417	ncRNA	0.025000	0.497512	
mm_42444.1	chr5	115430505	115430705	+	1	NA	NA	NA	920	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.090000	0.696517	
mm_76168.1	chr8	82389868	82390068	-	1	NA	NA	NA	12618	NM_001254747	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.005000	0.477612	
mm_126313.1	chr15	79671003	79671203	+	1	NA	NA	NA	235	NM_172609	223696	Mm.246435	NM_172609	ENSMUSG00000022427	Tomm22	2310047D01|Tom22	translocase of outer mitochondrial membrane 22 homolog (yeast)	protein-coding	0.130000	0.746269	
mm_101566.1	chr11	34207467	34207667	-	1	NA	NA	NA	522	NM_023907	14233	Mm.32926	NM_023907	ENSMUSG00000047861	Foxi1	5830401E05Rik|FREAC6|Fkh10|HFH-3|Hfh3	forkhead box I1	protein-coding	0.050000	0.562189	
mm_115264.1	chr13	110633660	110633860	+	1	NA	NA	NA	238716	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.010000	0.422886	
mm_79519.1	chr9	57541377	57541577	+	1	NA	NA	NA	3949	NM_001166364	78323	Mm.25814	NM_175273	ENSMUSG00000032305	Fam219b	2310046O06Rik|AI594866	family with sequence similarity 219, member B	protein-coding	0.005000	0.402985	
mm_21903.1	chr2	166194231	166194431	-	1	NA	NA	NA	-38648	NM_028072	72043	Mm.1011	NM_028072	ENSMUSG00000006800	Sulf2	2010004N24Rik|AU020235|MSulf-2|mKIAA1247	sulfatase 2	protein-coding	0.030000	0.542289	
mm_132070.1	chr16	30065210	30065410	+	1	NA	NA	NA	-47	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hairy and enhancer of split 1 (Drosophila)	protein-coding	0.055000	0.557214	
mm_38714.1	chr4	145225785	145225985	-	1	NA	NA	NA	20985	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.005000	0.417910	39(CTTTCTATAAGG,-,0.00)
mm_33772.1	chr4	134493522	134493722	+	1	NA	NA	NA	-3139	NM_001285845	71904	Mm.142343	NM_027995	ENSMUSG00000037348	Paqr7	2310021M12Rik|AV001994|BB007237|Mpra|PGLP|mPR	progestin and adipoQ receptor family member VII	protein-coding	0.005000	0.507463	
mm_49963.1	chr6	40656315	40656515	+	1	NA	NA	NA	27584	NM_001171003	232714	Mm.33401	NM_001171003	ENSMUSG00000068587	Mgam	6030407P20Rik|MGA	maltase-glucoamylase	protein-coding	0.005000	0.477612	
mm_91764.1	chr10	51495941	51496141	-	1	NA	NA	NA	5143	NM_013532	14728	Mm.34408	NM_013532	ENSMUSG00000062593	Lilrb4a	CD85K|Gp49b|HM18|ILT3|LIR-5|Lilrb4|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	protein-coding	0.005000	0.477612	
mm_172548.1	chr8	101107372	101107572	+	1	NA	NA	NA	1677639	NM_009866	12552	Mm.1571	NM_009866	ENSMUSG00000031673	Cdh11	Cad11|OSF-4	cadherin 11	protein-coding	0.050000	0.552239	
mm_47347.1	chr5	122560673	122560873	-	1	NA	NA	NA	53745	NM_009879	12589	Mm.10125	NM_009879	ENSMUSG00000029469	Ift81	AW060663|Cdv-1|Cdv-1r|Cdv1	intraflagellar transport 81	protein-coding	0.025000	0.457711	
mm_18268.1	chr2	52326878	52327078	-	1	NA	NA	NA	11820	NM_010889	17996	Mm.389247	NM_010889	ENSMUSG00000026950	Neb	AI595938	nebulin	protein-coding	0.015000	0.417910	
mm_15131.1	chr2	153918294	153918494	+	1	NA	NA	NA	164	NM_194357	378700	Mm.55392	NM_194357	ENSMUSG00000068008	Bpifb3	Lplunc3|Rya3	BPI fold containing family B, member 3	protein-coding	0.020000	0.611940	-33(GAGTATATAAGG,-,0.00)
mm_65191.1	chr7	19696561	19696761	-	1	NA	NA	NA	1737	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.085000	0.691542	
mm_170744.1	chr2	154892729	154892929	-	1	NA	NA	NA	77	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.090000	0.592040	
mm_68805.1	chr7	125491413	125491613	-	1	NA	NA	NA	29	NM_026330	67711	Mm.4467	NM_026330	ENSMUSG00000030750	Nsmce1	2510027N19Rik	NSE1 homolog, SMC5-SMC6 complex component	protein-coding	0.110000	0.651741	
mm_142216.1	chr17	37057066	37057266	-	1	NA	NA	NA	11200	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.020000	0.462687	
mm_111246.1	chr12	84876068	84876268	-	1	NA	NA	NA	327	NM_013589	16997	Mm.3900	NM_013589	ENSMUSG00000002020	Ltbp2	AW208642	latent transforming growth factor beta binding protein 2	protein-coding	0.070000	0.621891	
mm_8102.1	chr1	135849301	135849501	-	1	NA	NA	NA	8540	NM_001130176	21956	Mm.247470	NM_011619	ENSMUSG00000026414	Tnnt2	Tnt|cTnT	troponin T2, cardiac	protein-coding	0.020000	0.557214	
mm_157365.1	chrX	37191078	37191278	-	1	NA	NA	NA	-44	NM_153503	69942	Mm.307182	NM_153503	ENSMUSG00000036537	Rnf113a1	2810428C21Rik|Rnf113a	ring finger protein 113A1	protein-coding	0.110000	0.661692	
mm_172410.1	chr7	18872706	18872906	+	1	NA	NA	NA	-11884	NM_009402	21946	Mm.21855	NM_009402	ENSMUSG00000030413	Pglyrp1	PGRP|PGRP-S|Pglyrp|Tag7|Tasg7|Tnfsf3l	peptidoglycan recognition protein 1	protein-coding	0.035000	0.492537	-7(TTCCTTTTAAGC,-,0.00),-5(CCTTTTAAGCCG,+,0.00)
mm_104389.1	chr11	94485244	94485444	-	1	NA	NA	NA	-34	NM_144827	217116	Mm.156123	NM_144827	ENSMUSG00000020867	Spata20	Tisp78	spermatogenesis associated 20	protein-coding	0.015000	0.587065	
mm_16642.1	chr2	6129945	6130145	-	1	NA	NA	NA	140	NM_144883	227545	Mm.133542	NM_144883	ENSMUSG00000045319	Proser2	5430407P10Rik|AU067770	proline and serine rich 2	protein-coding	0.120000	0.711443	
mm_75913.1	chr8	71405797	71405997	-	1	NA	NA	NA	-115	NM_001310502	234396	Mm.216549	NM_172756	ENSMUSG00000046295	Ankle1	8430438L13Rik|Ankrd41|C430003I23|Lem3	ankyrin repeat and LEM domain containing 1	protein-coding	0.070000	0.621891	
mm_63455.1	chr7	127525036	127525236	+	1	NA	NA	NA	-2761	NR_034045	100217442	Mm.451113	NR_034045	ENSMUSG00000065259	Snora30	MBI-26	small nucleolar RNA, H/ACA box 30	snoRNA	0.000000	0.328358	
mm_60950.1	chr7	47050516	47050716	+	1	NA	NA	NA	-24	NM_026436	67893	Mm.27338	NM_026436	ENSMUSG00000010307	Tmem86a	1810054O13Rik|AI414959|AW742698	transmembrane protein 86A	protein-coding	0.090000	0.631841	-93(CCTTTTCAACGC,+,0.00)
mm_69234.1	chr7	127708593	127708793	-	1	NA	NA	NA	73	NM_009746	12055	Mm.89667	NM_009746	ENSMUSG00000030814	Bcl7c	C230096E12Rik	B cell CLL/lymphoma 7C	protein-coding	0.145000	0.810945	
mm_96540.1	chr11	68691993	68692193	+	1	NA	NA	NA	178	NM_175260	77579	Mm.218233	NM_175260	ENSMUSG00000020900	Myh10	5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005	myosin, heavy polypeptide 10, non-muscle	protein-coding	0.075000	0.666667	
mm_84552.1	chr9	67633838	67634038	-	1	NA	NA	NA	-74235	NM_001081242	70549	Mm.33645	NM_027458	ENSMUSG00000052698	Tln2	5730421P04Rik|AI507121|AI787438|AL118320|mKIAA0320	talin 2	protein-coding	0.160000	0.771144	
mm_41912.1	chr5	105591262	105591462	+	1	NA	NA	NA	71891	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.015000	0.417910	
mm_33532.1	chr4	130932283	130932483	+	1	NA	NA	NA	-12002	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.000000	0.447761	
mm_48820.1	chr5	149051208	149051408	-	1	NA	NA	NA	308	NM_001313894	15289	Mm.207047	NM_010439	ENSMUSG00000066551	Hmgb1	HMG-1|Hmg1|SBP-1|p30	high mobility group box 1	protein-coding	0.085000	0.616915	
mm_49270.1	chr6	17516130	17516330	+	1	NA	NA	NA	52273	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.000000	0.437811	
mm_143588.1	chr17	74459012	74459212	-	1	NA	NA	NA	-4	NM_001033367	268973	Mm.311884	NM_001033367	ENSMUSG00000039193	Nlrc4	9530011P19Rik|CLAN|CLAN1|CLANA|CLANB|CLANC|CLAND|Card12|IPAF	NLR family, CARD domain containing 4	protein-coding	0.020000	0.378109	
mm_7702.1	chr1	130422944	130423144	-	1	NA	NA	NA	-1	NM_001317361	13137	Mm.436759	NM_007827	ENSMUSG00000026401	Cd55b	AI323748|Daf|Daf-TM|Daf2|TM-DAF	CD55 molecule, decay accelerating factor for complement B	protein-coding	0.050000	0.631841	
mm_36768.1	chr4	101551100	101551300	-	1	NA	NA	NA	606	NM_001164583	72685	Mm.76494	NM_198412	ENSMUSG00000028528	Dnajc6	2810027M23Rik|mKIAA0473	DnaJ heat shock protein family (Hsp40) member C6	protein-coding	0.015000	0.502488	-33(TGGTATAAAAGC,-,0.00)
mm_155512.1	chrX	74177131	74177331	+	1	NA	NA	NA	-28	NM_031379	83553	Mm.25057	NM_031379	ENSMUSG00000031397	Tktl1	C79967	transketolase-like 1	protein-coding	0.065000	0.606965	
mm_21049.1	chr2	152596345	152596545	-	1	NA	NA	NA	40	NM_001037752	433490	Mm.23779	NM_001037752	ENSMUSG00000062124	Defb45	Defb27|OTTMUSG00000015859	defensin beta 45	protein-coding	0.020000	0.547264	
mm_1400.1	chr1	67144727	67144927	+	1	NA	NA	NA	21800	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.005000	0.368159	
mm_151412.1	chr19	56669185	56669385	+	1	NA	NA	NA	-53087	NM_007419	11554	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.010000	0.597015	
mm_32649.1	chr4	115062751	115062951	+	1	NA	NA	NA	5040	NM_001287388	21349	Mm.239869	NM_011527	ENSMUSG00000028717	Tal1	Hpt|SCL/tal-1|Scl|bHLHa17|tal-1	T cell acute lymphocytic leukemia 1	protein-coding	0.020000	0.512438	
mm_60360.1	chr7	44428755	44428955	+	1	NA	NA	NA	-13632	NM_198250	272381	Mm.44173	NM_198250	ENSMUSG00000047085	Lrrc4b	A830007M12|Lrig4	leucine rich repeat containing 4B	protein-coding	0.105000	0.776119	
mm_58567.1	chr7	4792875	4793075	+	1	NA	NA	NA	10	NM_009081	19943	Mm.379002	NM_009081	ENSMUSG00000030432	Rpl28	D7Wsu21e	ribosomal protein L28	protein-coding	0.095000	0.641791	-44(CCATTTTAAAGG,-,0.00)
mm_160875.1	chr11	68954913	68955113	-	1	NA	NA	NA	1845	NM_177566	442801	Mm.376147	NM_177566	ENSMUSG00000052921	Arhgef15	D130071N09|D530030K12Rik|E5	Rho guanine nucleotide exchange factor (GEF) 15	protein-coding	0.040000	0.611940	
mm_121201.1	chr14	103051810	103052010	+	1	NA	NA	NA	4898	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.010000	0.487562	
mm_59094.1	chr7	19696685	19696885	+	1	NA	NA	NA	1613	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.100000	0.696517	
mm_161489.1	chr15	85580446	85580646	-	1	NA	NA	NA	183	NM_001163633	22422	Mm.306946	NM_009528	ENSMUSG00000022382	Wnt7b	Wnt-7b	wingless-type MMTV integration site family, member 7B	protein-coding	0.095000	0.676617	
mm_89762.1	chr10	100038032	100038232	+	1	NA	NA	NA	22311	NM_013598	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.000000	0.363184	-92(CACCTTAAAAGA,-,0.00),51(TTCTTTAAAAGT,-,0.00),52(TCTTTAAAAGTA,+,0.00)
mm_50983.1	chr6	62167130	62167330	+	1	NA	NA	NA	-986420	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA	0.000000	0.308458	
mm_68558.1	chr7	114479819	114480019	-	1	NA	NA	NA	64665	NM_011055	18576	Mm.430730	NM_011055	ENSMUSG00000030671	Pde3b	9830102A01Rik|AI847709	phosphodiesterase 3B, cGMP-inhibited	protein-coding	0.020000	0.393035	
mm_122808.1	chr14	54577389	54577589	-	1	NA	NA	NA	172	NM_010590	16475	Mm.100253	NM_010590	ENSMUSG00000022178	Ajuba	Jub	ajuba LIM protein	protein-coding	0.125000	0.736318	
mm_94954.1	chr11	30139189	30139389	+	1	NA	NA	NA	58968	NM_009260	20742	Mm.123110	NM_009260	ENSMUSG00000020315	Sptbn1	9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049	spectrin beta, non-erythrocytic 1	protein-coding	0.050000	0.567164	
mm_40891.1	chr5	75152073	75152273	+	1	NA	NA	NA	-78	NR_144636	18595	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.005000	0.492537	
mm_125069.1	chr15	25941019	25941219	+	1	NA	NA	NA	293	NM_025459	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.015000	0.517413	-1(CTTCTTAGAGCC,+,0.00)
mm_88016.1	chr10	67185589	67185789	+	1	NA	NA	NA	-61	NM_001242396	108829	Mm.23846	NM_207221	ENSMUSG00000037876	Jmjd1c	5430433L24Rik|D630035I23Rik|Jmjdic|TRIP8	jumonji domain containing 1C	protein-coding	0.045000	0.522388	
mm_32826.1	chr4	117560374	117560574	+	1	NA	NA	NA	10109	NM_080469	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.020000	0.393035	25(GTTTATTAAAGC,-,0.00)
mm_74055.1	chr8	122307154	122307354	+	1	NA	NA	NA	25113	NM_009569	22761	Mm.3105	NM_009569	ENSMUSG00000049577	Zfpm1	FOG|Fog1	zinc finger protein, multitype 1	protein-coding	0.015000	0.567164	
mm_88650.1	chr10	79988536	79988736	+	1	NA	NA	NA	36	NM_007725	12798	Mm.157770	NM_007725	ENSMUSG00000004665	Cnn2	AA408047|AI324678|Calpo2	calponin 2	protein-coding	0.115000	0.706468	-94(CGCCTTATAAGG,-,0.00),-92(CCTTATAAGGAC,+,0.00)
mm_153687.1	chr19	44396731	44396931	-	1	NA	NA	NA	10878	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.020000	0.452736	
mm_21626.1	chr2	164277091	164277291	-	1	NA	NA	NA	1116	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.015000	0.422886	
mm_63936.1	chr7	139586241	139586441	+	1	NA	NA	NA	-3544	NR_027857	14912	Mm.28308	NM_183248	ENSMUSG00000041309	Nkx6-2	Gtx|Nkx6.2	NK6 homeobox 2	protein-coding	0.025000	0.547264	
mm_4758.1	chr1	182341631	182341831	+	1	NA	NA	NA	-125	NM_175127	67948	Mm.30737	NM_175127	ENSMUSG00000047539	Fbxo28	4833428J17Rik|5730505P19Rik|D1Ertd578e|Fbx28|mKIAA0483	F-box protein 28	protein-coding	0.045000	0.547264	
mm_150349.1	chr19	34644122	34644322	+	1	NA	NA	NA	3333	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.005000	0.497512	
mm_9565.1	chr1	173977234	173977434	-	1	NA	NA	NA	5510	NM_008327	26388	Mm.218770	NM_008327	ENSMUSG00000026535	Ifi202b	Ifbip-1|Ifi202|Ifi202a|p202	interferon activated gene 202B	protein-coding	0.005000	0.462687	
mm_148724.1	chr19	5846805	5847005	+	1	NA	NA	NA	-1425	NR_003513	66961	Mm.281895	NR_003513	ENSMUSG00000092274	Neat1	2310043N10Rik|VINC	nuclear paraspeckle assembly transcript 1 (non-protein coding)	ncRNA	0.015000	0.457711	
mm_171993.1	chr5	98797601	98797801	-	1	NA	NA	NA	-56714	NM_173404	110075	Mm.136461	NM_173404	ENSMUSG00000029335	Bmp3	9530029I04Rik	bone morphogenetic protein 3	protein-coding	0.000000	0.492537	
mm_127006.1	chr15	95800601	95800801	+	1	NA	NA	NA	9858	NM_001253813	105722	Mm.38087	NM_175344	ENSMUSG00000064210	Ano6	2900059G15Rik|AA407480|AW554778|F730003B03Rik|Tmem16f	anoctamin 6	protein-coding	0.020000	0.557214	
mm_78389.1	chr9	28459885	28460085	+	1	NA	NA	NA	668716	NM_177906	330908	Mm.379474	NM_177906	ENSMUSG00000062257	Opcml	2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam	opioid binding protein/cell adhesion molecule-like	protein-coding	0.000000	0.303483	
mm_128360.1	chr15	40014583	40014783	-	1	NA	NA	NA	52034	NR_045719	105976	Mm.394885	NR_045719		AU022793	-	expressed sequence AU022793	ncRNA	0.020000	0.437811	
mm_111208.1	chr12	84392763	84392963	-	1	NA	NA	NA	8071	NM_001286058	12499	Mm.10211	NM_007647	ENSMUSG00000021236	Entpd5	AI196558|AI987697|Cd39l4|ER-UDPase|NTPDase-5|NTPDase5|Pcph|mNTPase	ectonucleoside triphosphate diphosphohydrolase 5	protein-coding	0.010000	0.447761	
mm_111084.1	chr12	80260244	80260444	-	1	NA	NA	NA	27	NM_134156	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.115000	0.726368	
mm_19948.1	chr2	117298848	117299048	-	1	NA	NA	NA	43929	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp	RAS guanyl releasing protein 1	protein-coding	0.000000	0.427861	
mm_160846.1	chr11	50953516	50953716	-	1	NA	NA	NA	16	NM_008936	19127	Mm.1386	NM_008936	ENSMUSG00000044542	Prop1	Prop-1|df	paired like homeodomain factor 1	protein-coding	0.000000	0.442786	
mm_137782.1	chr17	29494412	29494612	+	1	NA	NA	NA	3467	NM_008842	18712	Mm.405293	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.025000	0.462687	-43(TGGTATAAAAAG,-,0.00),-23(CTCTTTAAAAAC,-,0.00),-21(CTTTAAAAACCC,+,0.00)
mm_150435.1	chr19	37547284	37547484	+	1	NA	NA	NA	-3034	NM_175353	107371	Mm.24865	NM_175353	ENSMUSG00000053799	Exoc6	4833405E05Rik|AW413330|C430002C19|Sec15|Sec15l1|hbd|msec15	exocyst complex component 6	protein-coding	0.025000	0.477612	
mm_54604.1	chr6	38311592	38311792	-	1	NA	NA	NA	-12433	NM_172467	209032	Mm.101389	NM_172467	ENSMUSG00000047749	Zc3hav1l	B130055L09Rik|E430016P22Rik	zinc finger CCCH-type, antiviral 1-like	protein-coding	0.005000	0.388060	
mm_74493.1	chr8	5085846	5086046	-	1	NA	NA	NA	19341	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.015000	0.358209	
mm_42504.1	chr5	115492273	115492473	+	1	NA	NA	NA	-7889	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.030000	0.547264	
mm_43569.1	chr5	137638395	137638595	+	1	NA	NA	NA	-2978	NM_001081962	751865	Mm.200763	NM_001081962	ENSMUSG00000079165	Sap25	-	sin3 associated polypeptide	protein-coding	0.010000	0.582090	
mm_33200.1	chr4	126286698	126286898	+	1	NA	NA	NA	4	NM_199473	329941	Mm.296327	NM_199473	ENSMUSG00000056174	Col8a2	AI429819	collagen, type VIII, alpha 2	protein-coding	0.150000	0.800995	
mm_124643.1	chr15	4727174	4727374	+	1	NA	NA	NA	64	NM_016704	12274	Mm.20247	NM_016704	ENSMUSG00000022181	C6	AW111623	complement component 6	protein-coding	0.025000	0.407960	
mm_164036.1	chr14	82845412	82845612	+	1	NA	NA	NA	-1598051	NM_001013753	219228	Mm.153643	NM_001013753	ENSMUSG00000035566	Pcdh17	C030033F14Rik|Gm78	protocadherin 17	protein-coding	0.000000	0.388060	
mm_51480.1	chr6	83032713	83032913	+	1	NA	NA	NA	658	NM_010070	13448	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.080000	0.661692	
mm_45812.1	chr5	87673986	87674186	-	1	NA	NA	NA	7878	NM_001286016	12990	Mm.427467	NM_007784	ENSMUSG00000070702	Csn1s1	AA959832|AW212882|Csna	casein alpha s1	protein-coding	0.005000	0.268657	
mm_38709.1	chr4	145215673	145215873	-	1	NA	NA	NA	-20768	NM_001276465	230895	Mm.240310	NM_001033190	ENSMUSG00000020220	Vps13d	-	vacuolar protein sorting 13D	protein-coding	0.010000	0.567164	
mm_16387.1	chr2	178455370	178455570	+	1	NA	NA	NA	24955	NM_198656	381409	Mm.330860	NM_198656	ENSMUSG00000039155	Cdh26	Gm1010	cadherin-like 26	protein-coding	0.010000	0.542289	
mm_126918.1	chr15	91641815	91642015	+	1	NA	NA	NA	-31309	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.000000	0.482587	
mm_109545.1	chr12	111678053	111678253	+	1	NA	NA	NA	48	NM_177374	328162	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0.110000	0.681592	
mm_5090.1	chr1	4497302	4497502	-	1	NA	NA	NA	-48	NM_001289465	20671	Mm.279103	NM_011441	ENSMUSG00000025902	Sox17	-	SRY (sex determining region Y)-box 17	protein-coding	0.065000	0.592040	
mm_102573.1	chr11	61579572	61579772	-	1	NA	NA	NA	15	NM_010148	13855	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0.145000	0.756219	
mm_29002.1	chr3	101592341	101592541	-	1	NA	NA	NA	12266	NM_144900	11928	Mm.193670	NM_144900	ENSMUSG00000033161	Atp1a1	Atpa-1|BC010319	ATPase, Na+/K+ transporting, alpha 1 polypeptide	protein-coding	0.045000	0.542289	
mm_66118.1	chr7	31051317	31051517	-	1	NA	NA	NA	37	NM_022007	57780	Mm.41770	NM_022007	ENSMUSG00000036578	Fxyd7	1110035I01Rik	FXYD domain-containing ion transport regulator 7	protein-coding	0.030000	0.626866	
mm_144656.1	chr18	34247570	34247770	+	1	NA	NA	NA	-25898	NR_040534	633395	Mm.414290	NR_040534	ENSMUSG00000073607	Gm10548	ENSMUSG00000073607	ribosomal protein L29 pseudogene	pseudo	0.045000	0.606965	
mm_158759.1	chrX	166483800	166484000	-	1	NA	NA	NA	-4033	NM_019773	56382	Mm.25306	NM_019773	ENSMUSG00000079316	Rab9	2410064E05Rik|AI195561|Rab9a|Sid6061p	RAB9, member RAS oncogene family	protein-coding	0.035000	0.656716	-89(CCCCTTAAGGGC,+,0.00),-88(CCCTTAAGGGCC,+,0.00)
mm_61452.1	chr7	75586192	75586392	+	1	NA	NA	NA	130758	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.035000	0.577114	
mm_48043.1	chr5	136432100	136432300	-	1	NA	NA	NA	-56397	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	0.000000	0.398010	
mm_100953.1	chr11	6624147	6624347	-	1	NA	NA	NA	1820	NM_001130457	21379	Mm.247761	NM_134011	ENSMUSG00000000384	Tbrg4	2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948	transforming growth factor beta regulated gene 4	protein-coding	0.050000	0.562189	
mm_96787.1	chr11	69965509	69965709	+	1	NA	NA	NA	188	NM_016887	53624	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	0.095000	0.691542	
mm_38809.1	chr4	148287841	148288041	-	1	NA	NA	NA	24	NM_001083342	242748	Mm.33873	NM_001083342	ENSMUSG00000041544	Ptchd2	Disp3|G630052C06Rik|RNDEu-2	patched domain containing 2	protein-coding	0.140000	0.741294	
mm_112577.1	chr13	13638188	13638388	+	1	NA	NA	NA	47879	NM_010748	17101	Mm.342337	NM_010748	ENSMUSG00000019726	Lyst	D13Sfk13|beige|bg	lysosomal trafficking regulator	protein-coding	0.015000	0.477612	
mm_137897.1	chr17	31681511	31681711	+	1	NA	NA	NA	3680	NM_001278570	12954	Mm.1228	NM_013501	ENSMUSG00000024041	Cryaa	Acry-1|Crya-1|Crya1|DAcry-1|lop18	crystallin, alpha A	protein-coding	0.010000	0.542289	
mm_16251.1	chr2	173158779	173158979	+	1	NA	NA	NA	5806	NM_011044	18534	Mm.266867	NM_011044	ENSMUSG00000027513	Pck1	AI265463|PEPCK|Pck-1	phosphoenolpyruvate carboxykinase 1, cytosolic	protein-coding	0.010000	0.437811	
mm_118409.1	chr14	3208357	3208557	+	1	NA	NA	NA	-36	NM_001320366	320333	Mm.350858	NM_177135	ENSMUSG00000096039	D830030K20Rik	-	RIKEN cDNA D830030K20 gene	protein-coding	0.070000	0.686567	
mm_46663.1	chr5	108678373	108678573	-	1	NA	NA	NA	-3108	NM_174870	231583	Mm.440571	NM_174870	ENSMUSG00000046959	Slc26a1	Sat1	solute carrier family 26 (sulfate transporter), member 1	protein-coding	0.015000	0.477612	
mm_69259.1	chr7	127876732	127876932	-	1	NA	NA	NA	-9	NM_146259	244219	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.075000	0.587065	
mm_69168.1	chr7	127214924	127215124	-	1	NA	NA	NA	3416	NM_016754	17907	Mm.14526	NM_016754	ENSMUSG00000030672	Mylpf	2410014J02Rik|MLC-2|Mlc2	myosin light chain, phosphorylatable, fast skeletal muscle	protein-coding	0.040000	0.517413	
mm_14841.1	chr2	147375429	147375629	+	1	NA	NA	NA	10535	NM_008780	18503	Mm.315502	NM_008780	ENSMUSG00000037034	Pax1	Pax-1|hbs|hunchback|un|undulated|wt	paired box 1	protein-coding	0.010000	0.328358	
mm_33526.1	chr4	130932136	130932336	+	1	NA	NA	NA	-12149	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.000000	0.467662	
mm_138140.1	chr17	34198512	34198712	+	1	NA	NA	NA	417	NM_010724	16913	Mm.180191	NM_010724	ENSMUSG00000024338	Psmb8	Lmp-7|Lmp7	proteasome (prosome, macropain) subunit, beta type 8 (large multifunctional peptidase 7)	protein-coding	0.040000	0.621891	
mm_6679.1	chr1	80549751	80549951	-	1	NA	NA	NA	103919	NR_040460	72208	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	Jr3	RIKEN cDNA 1700016L21 gene	ncRNA	0.000000	0.323383	
mm_152927.1	chr19	28011514	28011714	-	1	NA	NA	NA	-448	NM_011265	19726	Mm.313321	NM_011265	ENSMUSG00000040929	Rfx3	C230093O12Rik|MRFX3	regulatory factor X, 3 (influences HLA class II expression)	protein-coding	0.090000	0.666667	
mm_71499.1	chr8	46795075	46795275	+	1	NA	NA	NA	55430	NM_008391	16363	Mm.1149	NM_008391	ENSMUSG00000031627	Irf2	9830146E22Rik|AI646973|Irf-2	interferon regulatory factor 2	protein-coding	0.000000	0.358209	
mm_126947.1	chr15	92054056	92054256	+	1	NA	NA	NA	2991	NM_001159648	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.000000	0.462687	4(GGCTATAAAAGG,-,0.00)
mm_104832.1	chr11	99144986	99145186	-	1	NA	NA	NA	9991	NM_001301713	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.075000	0.601990	
mm_113495.1	chr13	37418442	37418642	+	1	NA	NA	NA	73197	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.015000	0.477612	
mm_61374.1	chr7	70365162	70365362	+	1	NA	NA	NA	-121	NR_045850	434198	Mm.389911	NR_045850	ENSMUSG00000100005	B130024G19Rik	-	RIKEN cDNA B130024G19 gene	ncRNA	0.030000	0.417910	
mm_111366.1	chr12	87200142	87200342	-	1	NA	NA	NA	-13	NM_001033475	382620	Mm.374912	NM_001033475	ENSMUSG00000034111	Tmed8	6430595O10Rik|AI447224|Gm1184|Mem1	transmembrane p24 trafficking protein 8	protein-coding	0.135000	0.751244	
mm_19108.1	chr2	79454926	79455126	-	1	NA	NA	NA	1610	NM_010894	18012	Mm.4636	NM_010894	ENSMUSG00000034701	Neurod1	BETA2|BHF-1|Nd1|Neurod|bHLHa3	neurogenic differentiation 1	protein-coding	0.030000	0.527363	
mm_150857.1	chr19	45014901	45015101	+	1	NA	NA	NA	-175	NM_145503	226154	Mm.28204	NM_145503	ENSMUSG00000035342	Lzts2	BC014695|LAPSER1|mKIAA1813	leucine zipper, putative tumor suppressor 2	protein-coding	0.015000	0.532338	
mm_85254.1	chr9	99304632	99304832	-	1	NA	NA	NA	53798	NM_177775	272636	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0.000000	0.492537	
mm_73520.1	chr8	107502480	107502680	+	1	NA	NA	NA	-48664	NR_029553	387158		NR_029553	ENSMUSG00000065439	Mir140	Mirn140|mir-140|mmu-mir-140	microRNA 140	ncRNA	0.015000	0.497512	
mm_119600.1	chr14	51008922	51009122	+	1	NA	NA	NA	1093	NM_029145	75019	Mm.318775	NM_029145	ENSMUSG00000021872	Rnase10	4930474F22Rik|Rah1	ribonuclease, RNase A family, 10 (non-active)	protein-coding	0.015000	0.477612	
mm_9784.1	chr1	181211910	181212110	-	1	NA	NA	NA	-32	NM_145514	226757	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.085000	0.666667	
mm_18212.1	chr2	48949170	48949370	-	1	NA	NA	NA	-3	NM_011958	26428	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0.085000	0.691542	
mm_53738.1	chr6	145121847	145122047	+	1	NA	NA	NA	208	NM_008511	16970	Mm.843	NM_008511	ENSMUSG00000030263	Lrmp	D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1	lymphoid-restricted membrane protein	protein-coding	0.030000	0.527363	
mm_110548.1	chr12	55489557	55489757	-	1	NA	NA	NA	2990	NM_010907	18035	Mm.170515	NM_010907	ENSMUSG00000021025	Nfkbia	AI462015|Nfkbi	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha	protein-coding	0.010000	0.417910	
mm_23588.1	chr3	64022687	64022887	+	1	NA	NA	NA	46644	NM_001033300	229363	Mm.331051	NM_001033300	ENSMUSG00000027823	Gmps	670032|AA591640|AI047208|Gm9479	guanine monophosphate synthetase	protein-coding	0.005000	0.393035	
mm_7220.1	chr1	93307173	93307373	-	1	NA	NA	NA	-1394	NM_001310756	69821	Mm.52809	NM_178051	ENSMUSG00000026273	Mterf4	1810059A23Rik|4933412H03Rik|Mterfd2	mitochondrial transcription termination factor 4	protein-coding	0.005000	0.447761	
mm_42937.1	chr5	122989173	122989373	+	1	NA	NA	NA	-81	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.085000	0.676617	
mm_146414.1	chr18	84293097	84293297	+	1	NA	NA	NA	205039	NM_146090	225791	Mm.147052	NM_146090	ENSMUSG00000049090	Zadh2	C530046K17Rik|PTGR-3|Pthr3	zinc binding alcohol dehydrogenase, domain containing 2	protein-coding	0.030000	0.457711	
mm_116876.1	chr13	55021379	55021579	-	1	NA	NA	NA	-94	NM_001033245	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.030000	0.442786	
mm_41461.1	chr5	90931001	90931201	+	1	NA	NA	NA	-95	NM_026788	665563	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	0.055000	0.631841	
mm_162003.1	chr19	40402186	40402386	-	1	NA	NA	NA	24	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.020000	0.487562	
mm_86630.1	chr10	13983020	13983220	+	1	NA	NA	NA	16741	NM_010437	15273	Mm.42157	NM_010437	ENSMUSG00000015501	Hivep2	Gm20114|MIBP1|Schnurri-2|Shn-2	human immunodeficiency virus type I enhancer binding protein 2	protein-coding	0.045000	0.661692	
mm_118378.1	chr13	117025256	117025456	-	1	NA	NA	NA	160	NM_001081009	52552	Mm.274466	NM_027272	ENSMUSG00000021725	Parp8	2810430O08Rik|ARTD16|D13Ertd275e	poly (ADP-ribose) polymerase family, member 8	protein-coding	0.040000	0.542289	
mm_89759.1	chr10	100015725	100015925	+	1	NA	NA	NA	4	NM_013598	17311	Mm.45124	NM_013598	ENSMUSG00000019966	Kitl	Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted	kit ligand	protein-coding	0.100000	0.671642	-32(CTGTATAAAAAG,-,0.00)
mm_1096.1	chr1	59706919	59707119	+	1	NA	NA	NA	2211	NR_028521	100217421		NR_028521		Snord11	MBII-95	small nucleolar RNA, C/D box 11	snoRNA	0.005000	0.293532	
mm_110009.1	chr12	16577135	16577335	-	1	NA	NA	NA	12535	NM_015763	14245	Mm.153625	NM_015763	ENSMUSG00000020593	Lpin1	4631420P06|Kiaa0188|Lipin1|fld|mKIAA0188	lipin 1	protein-coding	0.010000	0.502488	
mm_62615.1	chr7	107209280	107209480	+	1	NA	NA	NA	-65	NM_029660	76572	Mm.128134	NM_029660	ENSMUSG00000073894	Rbmxl2	1700012H05Rik|Hnrnpg-t	RNA binding motif protein, X-linked-like 2	protein-coding	0.105000	0.696517	
mm_3104.1	chr1	134481093	134481293	+	1	NA	NA	NA	-13467	NM_145510	98710	Mm.198119	NM_145510	ENSMUSG00000042229	Rabif	AI842864|AW549708|E130318E12Rik|MSS4|RASGFR3	RAB interacting factor	protein-coding	0.025000	0.422886	
mm_159289.1	chr2	173119282	173119482	-	1	NA	NA	NA	143	NM_001081387	664799	Mm.389396	NM_001081387	ENSMUSG00000070495	Ctcfl	Boris|OTTMUSG00000016680	CCCTC-binding factor (zinc finger protein)-like	protein-coding	0.040000	0.636816	
mm_43106.1	chr5	124497020	124497220	+	1	NA	NA	NA	13965	NM_029532	76167	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.025000	0.567164	
mm_17944.1	chr2	36105317	36105517	-	1	NA	NA	NA	-9	NM_008500	16874	Mm.12881	NM_008500	ENSMUSG00000026890	Lhx6	Lhx6.1	LIM homeobox protein 6	protein-coding	0.055000	0.701493	
mm_24908.1	chr3	96219789	96219989	+	1	NA	NA	NA	-27	NM_178213	621893		NM_178213	ENSMUSG00000063689	Hist2h2ab	EG621893|H2a-613a	histone cluster 2, H2ab	protein-coding	0.060000	0.532338	
mm_39990.1	chr5	32491789	32491989	+	1	NA	NA	NA	32919	NM_172707	19046	Mm.241931	NM_172707	ENSMUSG00000014956	Ppp1cb	1200010B19	protein phosphatase 1, catalytic subunit, beta isoform	protein-coding	0.010000	0.353234	
mm_81358.1	chr9	108662059	108662259	+	1	NA	NA	NA	61	NM_020520	57279	Mm.29666	NM_020520	ENSMUSG00000032602	Slc25a20	1110007P09Rik|C78826|Cact|mCAC	solute carrier family 25 (mitochondrial carnitine/acylcarnitine translocase), member 20	protein-coding	0.070000	0.621891	
mm_54473.1	chr6	34910516	34910716	-	1	NA	NA	NA	215	NM_001013366	101240	Mm.152120	NM_001013366	ENSMUSG00000058486	Wdr91	9530020G05Rik|AI987683|AU018665	WD repeat domain 91	protein-coding	0.085000	0.691542	
mm_14680.1	chr2	139677611	139677811	+	1	NA	NA	NA	-467	NM_001276489	319909	Mm.41113	NM_001126490	ENSMUSG00000074766	Ism1	5430433G21Rik|Ism	isthmin 1, angiogenesis inhibitor	protein-coding	0.050000	0.631841	
mm_136189.1	chr16	89047800	89048000	-	1	NA	NA	NA	-1	NM_130856	68484	Mm.46209	NM_130856	ENSMUSG00000062400	Krtap6-5	1110002D05Rik|Krtap16-8	keratin associated protein 6-5	protein-coding	0.010000	0.447761	-34(CAGTATAAAAGG,-,0.00)
mm_134230.1	chr16	11442496	11442696	-	1	NA	NA	NA	36948	NM_001290148	74478	Mm.325831	NM_028964	ENSMUSG00000071669	Snx29	4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a	sorting nexin 29	protein-coding	0.000000	0.457711	-32(TCATATATAAGC,-,0.00)
mm_113701.1	chr13	43137778	43137978	+	1	NA	NA	NA	15039	NM_001005748	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.020000	0.462687	
mm_97557.1	chr11	78931553	78931753	+	1	NA	NA	NA	6362	NM_001313922	18126	Mm.2893	NM_010927	ENSMUSG00000020826	Nos2	MAC-NOS|NOS-II|Nos-2|Nos2a|i-NOS|iNOS	nitric oxide synthase 2, inducible	protein-coding	0.005000	0.502488	64(CTCCTTTAAAGA,-,0.00),65(TCCTTTAAAGAG,+,0.00),65(TCCTTTAAAGAG,-,0.00)
mm_106711.1	chr12	3806981	3807181	+	1	NA	NA	NA	-79	NM_001271753	13435	Mm.5001	NM_007872	ENSMUSG00000020661	Dnmt3a	MmuIIIA	DNA methyltransferase 3A	protein-coding	0.170000	0.820896	
mm_131428.1	chr16	15345435	15345635	+	1	NA	NA	NA	248983	NM_001159351	70620	Mm.235407	NM_023585	ENSMUSG00000022674	Ube2v2	1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2	ubiquitin-conjugating enzyme E2 variant 2	protein-coding	0.000000	0.432836	
mm_93024.1	chr10	87930723	87930923	-	1	NA	NA	NA	-35848	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.020000	0.407960	
mm_91220.1	chr10	22048414	22048614	-	1	NA	NA	NA	19565	NM_053264	114671	Mm.288194	NM_053264	ENSMUSG00000069712	4930444G20Rik	-	RIKEN cDNA 4930444G20 gene	protein-coding	0.005000	0.497512	
mm_172760.1	chr8	88806424	88806624	+	1	NA	NA	NA	109496	NM_001128171	74256	Mm.490395	NM_173369	ENSMUSG00000036712	Cyld	2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849	CYLD lysine 63 deubiquitinase	protein-coding	0.050000	0.537313	
mm_59970.1	chr7	30442122	30442322	+	1	NA	NA	NA	3360	NM_007467	11803	Mm.2381	NM_007467	ENSMUSG00000006651	Aplp1	-	amyloid beta (A4) precursor-like protein 1	protein-coding	0.010000	0.572139	
mm_144324.1	chr18	12866505	12866705	+	1	NA	NA	NA	-3225	NM_001252490	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.015000	0.477612	
mm_14502.1	chr2	132151844	132152044	+	1	NA	NA	NA	-6836	NM_018824	54338	Mm.103581	NM_018824	ENSMUSG00000027340	Slc23a2	AI844736|NBTL1|SVCT2|Slc23a1|YSPL2|YSPL3|mKIAA0238	solute carrier family 23 (nucleobase transporters), member 2	protein-coding	0.030000	0.482587	
mm_79611.1	chr9	58618670	58618870	+	1	NA	NA	NA	36530	NM_009145	20320	Mm.15125	NM_009145	ENSMUSG00000032336	Nptn	AW554172|SDR-1|Sdfr1	neuroplastin	protein-coding	0.085000	0.592040	
mm_70729.1	chr8	18846190	18846390	+	1	NA	NA	NA	11	NM_026792	52123	Mm.24117	NM_026792	ENSMUSG00000031467	Agpat5	1110013A05Rik|D8Ertd319e	1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)	protein-coding	0.110000	0.661692	
mm_123879.1	chr14	72683662	72683862	-	1	NA	NA	NA	26241	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.015000	0.402985	
mm_61378.1	chr7	70606696	70606896	+	1	NA	NA	NA	-240050	NM_183261	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.020000	0.487562	
mm_37635.1	chr4	127408719	127408919	-	1	NA	NA	NA	-50655	NM_010291	14622	Mm.26859	NM_010291	ENSMUSG00000042357	Gjb5	Cnx31.1|Cx31.1|Gjb-5	gap junction protein, beta 5	protein-coding	0.035000	0.378109	
mm_133301.1	chr16	77593969	77594169	+	1	NA	NA	NA	-4867	NR_029535	387229		NR_029535	ENSMUSG00000065530	Mir99a	Mirn99a|mir-99a|mmu-mir-99a	microRNA 99a	ncRNA	0.025000	0.472637	
mm_50881.1	chr6	55681197	55681397	+	1	NA	NA	NA	-34	NM_009717	11922	Mm.5106	NM_009717	ENSMUSG00000037984	Neurod6	Atoh2|Math-2|Math2|Nex|Nex1m|bHLHa2	neurogenic differentiation 6	protein-coding	0.010000	0.472637	
mm_136731.1	chr17	8283700	8283900	+	1	NA	NA	NA	-13	NM_018819	55951	Mm.288510	NM_018819	ENSMUSG00000023861	Mpc1	0610006G08Rik|3830411I18Rik|Brp44l	mitochondrial pyruvate carrier 1	protein-coding	0.125000	0.676617	
mm_65033.1	chr7	18556644	18556844	-	1	NA	NA	NA	10561	NM_001037168	545925	Mm.440302	NM_001037168	ENSMUSG00000070797	Psg27	EG545925|cea15	pregnancy-specific glycoprotein 27	protein-coding	0.005000	0.527363	
mm_1336.1	chr1	66062645	66062845	+	1	NA	NA	NA	-112584	NM_008632	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.005000	0.452736	
mm_55462.1	chr6	67535110	67535310	-	1	NA	NA	NA	612	NM_020047	56753	Mm.439913	NM_020047	ENSMUSG00000051397	Tacstd2	C80403|EGP-1|GA733-1|Ly97|TROP2	tumor-associated calcium signal transducer 2	protein-coding	0.075000	0.597015	
mm_134564.1	chr16	20338578	20338778	-	1	NA	NA	NA	-13274	NM_183158	224044	Mm.276400	NM_183158	ENSMUSG00000022818	Cyp2ab1	EG224044|F730023N20	cytochrome P450, family 2, subfamily ab, polypeptide 1	protein-coding	0.005000	0.442786	
mm_19025.1	chr2	76966999	76967199	-	1	NA	NA	NA	15448	NM_028004	22138	Mm.373672	NM_011652	ENSMUSG00000051747	Ttn	1100001C23Rik|2310036G12Rik|2310057K23Rik|2310074I15Rik|AF006999|AV006427|D330041I19Rik|D830007G01Rik|L56|mdm|shru	titin	protein-coding	0.015000	0.383085	
mm_173286.1	chrY	1732704	1732904	+	1	NA	NA	NA	-273022	NM_148943	107868	Mm.347376	NM_148943	ENSMUSG00000069044	Usp9y	Dffry|Fafl2	ubiquitin specific peptidase 9, Y chromosome	protein-coding	0.035000	0.517413	-31(TTCTATTTAAGG,-,0.00),-29(CTATTTAAGGAC,+,0.00)
mm_46004.1	chr5	90696009	90696209	-	1	NA	NA	NA	-55582	NM_001310656	73246	Mm.30172	NM_028478	ENSMUSG00000029370	Rassf6	1600016B17Rik	Ras association (RalGDS/AF-6) domain family member 6	protein-coding	0.015000	0.417910	
mm_23598.1	chr3	65108966	65109166	+	1	NA	NA	NA	-302	NM_010597	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.015000	0.562189	-19(GCTCCTTAAAGG,-,0.00),-18(CTCCTTAAAGGG,-,0.00),-16(CCTTAAAGGGAC,+,0.00)
mm_167247.1	chr8	23058489	23058689	+	1	NA	NA	NA	330	NR_102385	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.135000	0.736318	
mm_87849.1	chr10	60932993	60933193	+	1	NA	NA	NA	5039	NR_033616	73616	Mm.159038	NR_033616	ENSMUSG00000037247	Pldi	1700125F08Rik|Poldi	polymorphic derived intron containing	ncRNA	0.010000	0.542289	
mm_69057.1	chr7	126884869	126885069	-	1	NA	NA	NA	-2	NM_001163774	381921	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	0.060000	0.631841	
mm_73721.1	chr8	112018613	112018813	+	1	NA	NA	NA	7354	NM_020584	57321	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	0.005000	0.417910	
mm_159630.1	chr4	137593693	137593893	+	1	NA	NA	NA	-396	NM_001347227	170707	Mm.218478	NM_130879	ENSMUSG00000043411	Usp48	2810449C13Rik|AI115503|BC021769|D330022K21Rik|Usp31	ubiquitin specific peptidase 48	protein-coding	0.080000	0.577114	
mm_165019.1	chr19	31910277	31910477	-	1	NA	NA	NA	41616	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.005000	0.462687	
mm_158412.1	chrX	136992943	136993143	-	1	NA	NA	NA	-11	NM_001114179	67062	Mm.276518	NM_001082412	ENSMUSG00000044348	Slc25a53	2310046F18Rik|2810402A17Rik|AI448995|AI841128|Mcart6	solute carrier family 25, member 53	protein-coding	0.060000	0.641791	
mm_52855.1	chr6	121871216	121871416	+	1	NA	NA	NA	32775	NM_008645	17836	Mm.1311	NM_008645	ENSMUSG00000059908	Mug1	-	murinoglobulin 1	protein-coding	0.000000	0.278607	
mm_6678.1	chr1	80544153	80544353	-	1	NA	NA	NA	98321	NR_040460	72208	Mm.396181	NR_040460	ENSMUSG00000101483	1700016L21Rik	Jr3	RIKEN cDNA 1700016L21 gene	ncRNA	0.005000	0.407960	
mm_76670.1	chr8	93500675	93500875	-	1	NA	NA	NA	34932	NM_001003951	67935	Mm.65457	NM_001003951	ENSMUSG00000058019	Ces5a	1700081L16Rik|1700122C07Rik|BB081581|Ces7|Gm503|cauxin	carboxylesterase 5A	protein-coding	0.005000	0.557214	-35(CACTATAAAAGG,-,0.00)
mm_12817.1	chr2	80316662	80316862	+	1	NA	NA	NA	1296	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.015000	0.412935	
mm_47920.1	chr5	135001271	135001471	-	1	NA	NA	NA	-21	NR_026907	71304	Mm.482317	NR_026907	ENSMUSG00000054909	Wbscr25	4933433J03Rik|4933439O14Rik	Williams Beuren syndrome chromosome region 25 (human)	ncRNA	0.035000	0.631841	
mm_141438.1	chr17	29579340	29579540	-	1	NA	NA	NA	16865	NR_045447	74092	Mm.396264	NR_045447	ENSMUSG00000089900	Tbc1d22bos	0610038L08Rik	TBC1 domain family, member 22B, opposite strand	ncRNA	0.005000	0.532338	-7(CCTTTAAGATTC,+,0.00)
mm_81903.1	chr9	119983028	119983228	+	1	NA	NA	NA	1530	NM_153287	215418	Mm.491094	NM_153287	ENSMUSG00000032515	Csrnp1	4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3	cysteine-serine-rich nuclear protein 1	protein-coding	0.075000	0.676617	
mm_15793.1	chr2	164425889	164426089	+	1	NA	NA	NA	17199	NM_011521	20971	Mm.3815	NM_011521	ENSMUSG00000017009	Sdc4	AA959608|AW108331|S4|Synd4|ryudocan|syndecan-4	syndecan 4	protein-coding	0.025000	0.542289	
mm_121817.1	chr14	20452080	20452280	-	1	NA	NA	NA	45	NM_001163638	76670	Mm.159759	NM_029698	ENSMUSG00000039543	Cfap70	Ttc18	cilia and flagella associated protein 70	protein-coding	0.020000	0.477612	-6(CCTTTTAGGGGC,+,0.00)
mm_114289.1	chr13	58806545	58806745	+	1	NA	NA	NA	76	NM_008745	18212	Mm.130054	NM_008745	ENSMUSG00000055254	Ntrk2	GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB	neurotrophic tyrosine kinase, receptor, type 2	protein-coding	0.080000	0.577114	-65(CCTTTTAAATGA,+,0.00)
mm_260.1	chr1	20836737	20836937	+	1	NA	NA	NA	-16624	NM_008563	17215	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|p1.m	minichromosome maintenance complex component 3	protein-coding	0.005000	0.467662	-33(CCATTAATACTG,+,0.00)
mm_74500.1	chr8	7580136	7580336	-	1	NA	NA	NA	1080537	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.005000	0.373134	
mm_7580.1	chr1	125393672	125393872	-	1	NA	NA	NA	41955	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.005000	0.388060	
mm_75340.1	chr8	43306634	43306834	-	1	NA	NA	NA	275	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.015000	0.417910	
mm_37066.1	chr4	116122694	116122894	-	1	NA	NA	NA	895	NM_009015	19366	Mm.3655	NM_009015	ENSMUSG00000028702	Rad54l	RAD54	RAD54 like (S. cerevisiae)	protein-coding	0.005000	0.383085	
mm_124679.1	chr15	6429373	6429573	+	1	NA	NA	NA	-15860	NM_013485	12279	Mm.29095	NM_013485	ENSMUSG00000022149	C9	-	complement component 9	protein-coding	0.025000	0.502488	
mm_82715.1	chr9	24695458	24695658	-	1	NA	NA	NA	735	NM_001166207	320752	Mm.46158	NM_001166207	ENSMUSG00000085576	Dpy19l2	4932443J21Rik|Gm18376	dpy-19-like 2 (C. elegans)	protein-coding	0.020000	0.343284	
mm_38353.1	chr4	137785411	137785611	-	1	NA	NA	NA	10873	NM_007431	11647	Mm.288186	NM_007431	ENSMUSG00000028766	Alpl	ALP|APTNAP|Akp-2|Akp2|TNAP|TNSALP	alkaline phosphatase, liver/bone/kidney	protein-coding	0.015000	0.527363	
mm_25615.1	chr3	118431406	118431606	+	1	NA	NA	NA	-2351	NR_029551	387155		NR_029551	ENSMUSG00000065569	Mir137	Mirn137|mir-137|mmu-mir-137	microRNA 137	ncRNA	0.040000	0.567164	
mm_136902.1	chr17	13015154	13015354	+	1	NA	NA	NA	7415	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.015000	0.407960	
mm_143909.1	chr17	85090140	85090340	-	1	NA	NA	NA	27	NM_145984	213760	Mm.259035	NM_145984	ENSMUSG00000024127	Prepl	2810457N15Rik|9530014L06Rik|D030028O16Rik|mKIAA0436	prolyl endopeptidase-like	protein-coding	0.060000	0.557214	
mm_169751.1	chr15	89659549	89659749	+	1	NA	NA	NA	-67726	NM_026817	68708	Mm.23258	NM_026817	ENSMUSG00000022621	Rabl2	1110031N17Rik|AW549303|Rabl2a	RAB, member RAS oncogene family-like 2	protein-coding	0.035000	0.447761	
mm_106967.1	chr12	8935923	8936123	+	1	NA	NA	NA	-11906	NM_010770	17182	Mm.42226	NM_010770	ENSMUSG00000020583	Matn3	AV009181	matrilin 3	protein-coding	0.015000	0.477612	
mm_114444.1	chr13	66563807	66564007	+	1	NA	NA	NA	-122789	NM_001290196	76803	Mm.183391	NM_183119	ENSMUSG00000074832	2410141K09Rik	4930482J15Rik|Ayu21-35|Gt(pU21)35Imeg	RIKEN cDNA 2410141K09 gene	protein-coding	0.010000	0.537313	
mm_94737.1	chr11	21091218	21091418	+	1	NA	NA	NA	-6	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.095000	0.691542	
mm_50141.1	chr6	41543245	41543445	+	1	NA	NA	NA	21569	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.020000	0.512438	
mm_84830.1	chr9	78205913	78206113	-	1	NA	NA	NA	14047	NM_010357	14860	Mm.2662	NM_010357	ENSMUSG00000032348	Gsta4	GST5.7|mGsta4	glutathione S-transferase, alpha 4	protein-coding	0.010000	0.402985	35(GGTTTTAAATGG,-,0.00)
mm_112839.1	chr13	20827582	20827782	+	1	NA	NA	NA	33569	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.398010	
mm_155719.1	chrX	96112102	96112302	+	1	NA	NA	NA	16157	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.010000	0.378109	
mm_18179.1	chr2	45110256	45110456	-	1	NA	NA	NA	-79	NM_001289521	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.070000	0.582090	
mm_162330.1	chr1	41743479	41743679	+	1	NA	NA	NA	-562327	NR_040475	74897	Mm.243822	NR_040475	ENSMUSG00000104072	4930448I06Rik	-	RIKEN cDNA 4930448I06 gene	ncRNA	0.025000	0.378109	-66(CCCTCTTTATGG,-,0.00)
mm_145277.1	chr18	53109264	53109464	+	1	NA	NA	NA	-67001	NM_026386	67804	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.005000	0.492537	
mm_127927.1	chr15	10454724	10454924	-	1	NA	NA	NA	15692	NM_030046	78244	Mm.297862	NM_030046	ENSMUSG00000044224	Dnajc21	4930461P20Rik|9930116P15Rik	DnaJ heat shock protein family (Hsp40) member C21	protein-coding	0.030000	0.527363	
mm_145667.1	chr18	61256697	61256897	+	1	NA	NA	NA	36298	NM_146086	225600	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	0.025000	0.487562	
mm_11212.1	chr2	29624966	29625166	+	1	NA	NA	NA	5346	NM_001039086	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.010000	0.552239	
mm_37832.1	chr4	132029873	132030073	-	1	NA	NA	NA	19105	NM_001128606	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.000000	0.333333	
mm_52507.1	chr6	115360930	115361130	+	1	NA	NA	NA	79	NM_001127330	19016	Mm.3020	NM_011146	ENSMUSG00000000440	Pparg	Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2	peroxisome proliferator activated receptor gamma	protein-coding	0.145000	0.810945	
mm_7262.1	chr1	94052465	94052665	-	1	NA	NA	NA	-12	NM_008798	18566	Mm.5024	NM_008798	ENSMUSG00000026285	Pdcd1	Ly101|PD-1|Pdc1	programmed cell death 1	protein-coding	0.025000	0.616915	
mm_97670.1	chr11	79673838	79674038	+	1	NA	NA	NA	1148	NR_045898	72218	Mm.443271	NR_045898	ENSMUSG00000086569	Rab11fip4os2	1700020F10Rik|4930542H20Rik|Rab11fib4os2	RAB11 family interacting protein 4 (class II), opposite strand 2	ncRNA	0.025000	0.537313	
mm_103657.1	chr11	78977636	78977836	-	1	NA	NA	NA	7188	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.015000	0.467662	41(TGGTAGAAAAGG,-,0.00)
mm_63047.1	chr7	121734402	121734602	+	1	NA	NA	NA	23	NM_011326	20278	Mm.35247	NM_011326	ENSMUSG00000000216	Scnn1g	SCNEG	sodium channel, nonvoltage-gated 1 gamma	protein-coding	0.055000	0.606965	-33(GGCTTTATGAGG,-,0.00)
mm_62082.1	chr7	92933054	92933254	+	1	NA	NA	NA	57901	NM_028243	72461	Mm.389969	NM_028243	ENSMUSG00000061119	Prcp	2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP	prolylcarboxypeptidase (angiotensinase C)	protein-coding	0.020000	0.353234	
mm_146261.1	chr18	77820268	77820468	+	1	NA	NA	NA	25818	NM_013831	19201	Mm.57174	NM_013831	ENSMUSG00000025429	Pstpip2	MAYP|cmo	proline-serine-threonine phosphatase-interacting protein 2	protein-coding	0.000000	0.417910	
mm_134764.1	chr16	23496160	23496360	-	1	NA	NA	NA	24330	NM_008555	17174	Mm.1213	NM_008555	ENSMUSG00000022887	Masp1	AW048060|CCPII|Crarf|Masp1/3	mannan-binding lectin serine peptidase 1	protein-coding	0.020000	0.532338	
mm_66781.1	chr7	46958378	46958578	-	1	NA	NA	NA	40	NM_001040695	54122	Mm.1999	NM_016855	ENSMUSG00000043262	Uevld	8430408E05Rik|Attp	UEV and lactate/malate dehyrogenase domains	protein-coding	0.085000	0.641791	
mm_18906.1	chr2	76720612	76720812	-	1	NA	NA	NA	45397	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.035000	0.497512	
mm_76873.1	chr8	105565810	105566010	-	1	NA	NA	NA	130	NM_013477	11972	Mm.17708	NM_013477	ENSMUSG00000013160	Atp6v0d1	AI267038|Ac39|Atp6d|P39|VATX|Vma6	ATPase, H+ transporting, lysosomal V0 subunit D1	protein-coding	0.085000	0.671642	
mm_169521.1	chr14	8800225	8800425	-	1	NA	NA	NA	133935	NR_045968	74859	Mm.84041	NR_045968	ENSMUSG00000097898	4930455B14Rik	1700027C12Rik	RIKEN cDNA 4930455B14 gene	ncRNA	0.070000	0.587065	
mm_91590.1	chr10	40258022	40258222	-	1	NA	NA	NA	-457	NM_026113	67371	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	0.030000	0.482587	-35(CAGTTTTAAAGG,-,0.00)
mm_158452.1	chrX	140543086	140543286	-	1	NA	NA	NA	1	NM_010286	14605	Mm.22216	NM_010286	ENSMUSG00000031431	Tsc22d3	DIP|Dsip1|Gilz|TSC-22R|Tilz3	TSC22 domain family, member 3	protein-coding	0.015000	0.532338	-34(TCCTATATAAAG,-,0.00)
mm_153170.1	chr19	34493401	34493601	-	1	NA	NA	NA	-18366	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.010000	0.517413	
mm_26365.1	chr3	142560060	142560260	+	1	NA	NA	NA	108	NM_001289492	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.020000	0.507463	
mm_127653.1	chr15	102493395	102493595	+	1	NA	NA	NA	22863	NM_001174073	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.010000	0.398010	5(GACTATAAAAGT,-,0.00)
mm_130722.1	chr15	101078401	101078601	-	1	NA	NA	NA	-24102	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.105000	0.825871	
mm_129703.1	chr15	81726124	81726324	-	1	NA	NA	NA	3695	NM_011241	19387	Mm.270975	NM_011241	ENSMUSG00000022391	Rangap1	C79654|Fug1|mKIAA1835	RAN GTPase activating protein 1	protein-coding	0.015000	0.577114	
mm_120447.1	chr14	65968464	65968664	+	1	NA	NA	NA	81	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.055000	0.646766	47(CGCTATAAATAG,-,0.00)
mm_80984.1	chr9	103220886	103221086	+	1	NA	NA	NA	9300	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.035000	0.542289	
mm_8404.1	chr1	151517878	151518078	-	1	NA	NA	NA	-17155	NM_011277	19821	Mm.474038	NM_011277	ENSMUSG00000026484	Rnf2	AI326319|AI450156|AU019207|Ring1B|dinG	ring finger protein 2	protein-coding	0.005000	0.522388	-36(TACTATAAAAGG,-,0.00)
mm_30590.1	chr4	6191008	6191208	+	1	NA	NA	NA	3	NM_026534	68053	Mm.404043	NM_026534	ENSMUSG00000028243	Ubxn2b	3110003A22Rik|6430407D20Rik|AI451665|p37	UBX domain protein 2B	protein-coding	0.100000	0.716418	
mm_71784.1	chr8	66697157	66697357	+	1	NA	NA	NA	-165	NM_010934	18166	Mm.5112	NM_010934	ENSMUSG00000036437	Npy1r	Npyr|Y1-R	neuropeptide Y receptor Y1	protein-coding	0.040000	0.522388	-100(GACTTTTAAAAC,-,0.00),-98(CTTTTAAAACAG,+,0.00)
mm_60250.1	chr7	43774558	43774758	+	1	NA	NA	NA	41	NM_001177373	56538	Mm.154276	NM_019974	ENSMUSG00000067616	Klk11	2310015I08Rik|Prss20|TLSP	kallikrein related-peptidase 11	protein-coding	0.020000	0.537313	
mm_81552.1	chr9	110333265	110333465	+	1	NA	NA	NA	9	NM_001001144	235623	Mm.288741	NM_001001144	ENSMUSG00000032485	Scap	9530044G19|mKIAA0199	SREBF chaperone	protein-coding	0.130000	0.746269	
mm_79843.1	chr9	64811364	64811564	+	1	NA	NA	NA	453	NM_001162917	102442	Mm.222473	NM_176935	ENSMUSG00000053641	Dennd4a	AI115600|AI851943|F730015K02Rik	DENN/MADD domain containing 4A	protein-coding	0.105000	0.706468	
mm_119604.1	chr14	51091082	51091282	+	1	NA	NA	NA	105	NM_021472	58809	Mm.202665	NM_021472	ENSMUSG00000021876	Rnase4	C730049F20Rik|Rab1	ribonuclease, RNase A family 4	protein-coding	0.045000	0.567164	
mm_25825.1	chr3	127950204	127950404	+	1	NA	NA	NA	34133	NR_040552	329753	Mm.119720	NR_040552	ENSMUSG00000104763	9830132P13Rik	9830132P13	RIKEN cDNA 9830132P13 gene	ncRNA	0.000000	0.407960	
mm_156142.1	chrX	129749736	129749936	+	1	NA	NA	NA	94	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.085000	0.686567	
mm_106220.1	chr11	117040220	117040420	-	1	NA	NA	NA	-36463	NR_027059	76972	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0.025000	0.532338	
mm_167392.1	chr8	94985508	94985708	+	1	NA	NA	NA	1209	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.010000	0.542289	
mm_43827.1	chr5	142970481	142970681	+	1	NA	NA	NA	10226	NM_007984	14086	Mm.289707	NM_007984	ENSMUSG00000029581	Fscn1	AI663989|Fan1|fascin-1	fascin actin-bundling protein 1	protein-coding	0.055000	0.562189	
mm_75408.1	chr8	46426262	46426462	-	1	NA	NA	NA	-44675	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.000000	0.398010	
mm_33867.1	chr4	135948322	135948522	+	1	NA	NA	NA	1969	NM_008254	15356	Mm.482102	NM_008254	ENSMUSG00000028672	Hmgcl	AW476067|HL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	protein-coding	0.015000	0.537313	
mm_125409.1	chr15	41751569	41751769	+	1	NA	NA	NA	-37365	NM_001130165	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.020000	0.507463	
mm_73033.1	chr8	94180048	94180248	+	1	NA	NA	NA	1059	NM_013602	17748	Mm.192991	NM_013602	ENSMUSG00000031765	Mt1	MT-I|Mt-1	metallothionein 1	protein-coding	0.050000	0.601990	
mm_45002.1	chr5	38230639	38230839	-	1	NA	NA	NA	10257	NM_025281	17089	Mm.28560	NM_025281	ENSMUSG00000067367	Lyar	MLZ-264	Ly1 antibody reactive clone	protein-coding	0.030000	0.512438	
mm_73781.1	chr8	116978997	116979197	+	1	NA	NA	NA	-154	NM_027103	69528	Mm.272846	NM_027103	ENSMUSG00000031847	1700030J22Rik	-	RIKEN cDNA 1700030J22 gene	protein-coding	0.075000	0.616915	
mm_35313.1	chr4	25614878	25615078	-	1	NA	NA	NA	185025	NM_010243	14348	Mm.39101	NM_010243	ENSMUSG00000055373	Fut9	AI746471|AU067636|mFUT9|mFuc-TIX	fucosyltransferase 9	protein-coding	0.005000	0.313433	68(CTGTTTTAAAGC,-,0.00)
mm_29055.1	chr3	103749339	103749539	-	1	NA	NA	NA	-11438	NM_133859	99543	Mm.211535	NM_133859	ENSMUSG00000027848	Olfml3	2810002E22Rik|AI115209|AW550633|HNOEL-iso|ONT3|mONT3	olfactomedin-like 3	protein-coding	0.010000	0.492537	
mm_40103.1	chr5	34660198	34660398	+	1	NA	NA	NA	-81	NM_001080743	14772	Mm.117076	NM_019497	ENSMUSG00000052783	Grk4	A830025H08Rik|GRK|Gprk2l|Gprk4	G protein-coupled receptor kinase 4	protein-coding	0.050000	0.587065	
mm_76522.1	chr8	87472131	87472331	-	1	NA	NA	NA	361	NM_019626	12404	Mm.4880	NM_019626	ENSMUSG00000031654	Cbln1	AI323299	cerebellin 1 precursor protein	protein-coding	0.075000	0.741294	
mm_118439.1	chr14	8080293	8080493	+	1	NA	NA	NA	80	NM_025938	67053	Mm.210048	NM_025938	ENSMUSG00000023156	Rpp14	2610511E03Rik|AA682089	ribonuclease P 14 subunit	protein-coding	0.105000	0.597015	
mm_104899.1	chr11	99614746	99614946	-	1	NA	NA	NA	0	NM_027800	71453	Mm.51510	NM_027800	ENSMUSG00000060756	Krtap2-4	5530401P19Rik|KAP2.4|KRTAP2.4	keratin associated protein 2-4	protein-coding	0.010000	0.532338	-32(AGGTATATAAAG,-,0.00),-30(GTATATAAAGGG,-,0.00)
mm_98512.1	chr11	94952277	94952477	+	1	NA	NA	NA	-15216	NM_018792	54388	Mm.30482	NM_018792	ENSMUSG00000038994	Hils1	H1.9|TISP64	histone H1-like protein in spermatids 1	protein-coding	0.025000	0.592040	
mm_35306.1	chr4	24850996	24851196	-	1	NA	NA	NA	-10	NM_001033531	212390	Mm.412074	NM_001033531	ENSMUSG00000040387	Klhl32	6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900	kelch-like 32	protein-coding	0.145000	0.771144	
mm_167061.1	chr7	94141525	94141725	+	1	NA	NA	NA	1061746	NM_021427	58238	Mm.113787	NM_021427	ENSMUSG00000051515	Fam181b	A830059I20Rik|AB041569	family with sequence similarity 181, member B	protein-coding	0.000000	0.318408	
mm_51666.1	chr6	86365549	86365749	+	1	NA	NA	NA	-34	NM_025591	66488	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	0.120000	0.761194	
mm_131043.1	chr16	3889609	3889809	+	1	NA	NA	NA	5090	NM_001290689	74763	Mm.28403	NM_029090	ENSMUSG00000005982	Naa60	1200013P24Rik|AI315146|Nat15	N(alpha)-acetyltransferase 60, NatF catalytic subunit	protein-coding	0.015000	0.432836	49(CTTTTTAAAAGC,+,0.00),49(CTTTTTAAAAGC,-,0.00)
mm_125991.1	chr15	76354359	76354559	+	1	NA	NA	NA	3165	NM_026859	68877	Mm.289680	NM_026859	ENSMUSG00000022553	Maf1	1110068E11Rik|AU042856	MAF1 homolog, negative regulator of RNA polymerase III	protein-coding	0.035000	0.562189	
mm_168874.1	chr12	38527277	38527477	+	1	NA	NA	NA	87144	NR_045943	73867	Mm.78933	NR_045943		4930428E07Rik	-	RIKEN cDNA 4930428E07 gene	ncRNA	0.035000	0.502488	
mm_166889.1	chr7	28131496	28131696	-	1	NA	NA	NA	2130	NM_001164655	319482	Mm.483194	NM_176924	ENSMUSG00000078776	9530053A07Rik	FCGBP	RIKEN cDNA 9530053A07 gene	protein-coding	0.030000	0.562189	-58(TACTTTAAAGGC,-,0.00),-57(ACTTTAAAGGCC,+,0.00)
mm_72674.1	chr8	84911010	84911210	+	1	NA	NA	NA	-2225	NR_103491	100503676	Mm.437155	NR_103491	ENSMUSG00000003812	Gm38426	-	predicted gene, 38426	ncRNA	0.025000	0.552239	
mm_123126.1	chr14	56180680	56180880	-	1	NA	NA	NA	-6181	NM_153052	245839	Mm.207063	NM_153052	ENSMUSG00000015443	Gzmn	GrN	granzyme N	protein-coding	0.005000	0.487562	
mm_79133.1	chr9	47554257	47554457	+	1	NA	NA	NA	24005	NM_018770	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.010000	0.402985	
mm_128554.1	chr15	55906505	55906705	-	1	NA	NA	NA	344	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding	0.070000	0.616915	
mm_115838.1	chr13	21287132	21287332	-	1	NA	NA	NA	5454	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.000000	0.388060	-100(CCTTAAAGACTG,+,0.00)
mm_80612.1	chr9	88326940	88327140	+	1	NA	NA	NA	-569	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	0.040000	0.537313	
mm_120383.1	chr14	64589725	64589925	+	1	NA	NA	NA	-832	NR_029813	387233		NR_029813	ENSMUSG00000065597	Mir124a-1	Mirn124a|Mirn124a-1	microRNA 124a-1	ncRNA	0.040000	0.517413	
mm_140549.1	chr17	6993158	6993358	-	1	NA	NA	NA	14398	NM_026611	68195	Mm.181237	NM_026611	ENSMUSG00000094724	Rnaset2b	0610007O07Rik|4833423A10Rik|4930532K22Rik|C79750|RNASE6PL|Rnaset2	ribonuclease T2B	protein-coding	0.015000	0.532338	-89(AAGTTTTAAAGG,-,0.00)
mm_95156.1	chr11	35783974	35784174	+	1	NA	NA	NA	1678	NR_029754	723824		NR_029754	ENSMUSG00000065553	Mir103-1	Mirn103-1|mir-103-1	microRNA 103-1	ncRNA	0.000000	0.422886	
mm_96216.1	chr11	62458342	62458542	+	1	NA	NA	NA	-18	NM_001039536	327942	Mm.390358	NM_199026	ENSMUSG00000014245	Pigl	Gm737	phosphatidylinositol glycan anchor biosynthesis, class L	protein-coding	0.085000	0.631841	
mm_67700.1	chr7	89526973	89527173	-	1	NA	NA	NA	-9487	NM_029614	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.010000	0.582090	
mm_133884.1	chr16	96525431	96525631	+	1	NA	NA	NA	57925	NM_008791	18546	Mm.5023	NM_008791	ENSMUSG00000090223	Pcp4	P16Rimb19|Pcp-4|Pep19	Purkinje cell protein 4	protein-coding	0.005000	0.477612	
mm_151401.1	chr19	56477628	56477828	+	1	NA	NA	NA	16091	NM_172641	226245	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	0.005000	0.472637	
mm_83183.1	chr9	40984394	40984594	-	1	NA	NA	NA	20134	NM_001281954	54698	Mm.42791	NM_019465	ENSMUSG00000032021	Crtam	-	cytotoxic and regulatory T cell molecule	protein-coding	0.010000	0.522388	
mm_168102.1	chr10	130594671	130594871	+	1	NA	NA	NA	-97392	NM_001103366	625131	Mm.469844	NM_001103366	ENSMUSG00000091511	Vmn2r87	EG625131	vomeronasal 2, receptor 87	protein-coding	0.000000	0.572139	
mm_3875.1	chr1	160997985	160998185	+	1	NA	NA	NA	19479	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.005000	0.417910	
mm_28430.1	chr3	90465515	90465715	-	1	NA	NA	NA	251	NM_008727	18160	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.130000	0.706468	
mm_8320.1	chr1	144775348	144775548	-	1	NA	NA	NA	-27	NM_022881	64214	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	0.010000	0.383085	
mm_172808.1	chr9	123461718	123461918	+	1	NA	NA	NA	-16883	NM_013860	29806	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.035000	0.532338	
mm_23154.1	chr3	40531312	40531512	+	1	NA	NA	NA	-8500	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.035000	0.592040	
mm_114868.1	chr13	94057575	94057775	+	1	NA	NA	NA	-121	NM_172589	218454	Mm.316553	NM_172589	ENSMUSG00000045312	Lhfpl2	6030465B15|AI447312|AW050335|mKIAA0206|vgim	lipoma HMGIC fusion partner-like 2	protein-coding	0.145000	0.810945	
mm_140719.1	chr17	15375876	15376076	-	1	NA	NA	NA	-153	NM_007865	13388	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta-like 1 (Drosophila)	protein-coding	0.085000	0.661692	
mm_128211.1	chr15	36140405	36140605	-	1	NA	NA	NA	-105	NM_001195748	626596	Mm.321798	NM_001195748	ENSMUSG00000037627	Rgs22	-	regulator of G-protein signalling 22	protein-coding	0.070000	0.696517	
mm_46430.1	chr5	104440529	104440729	-	1	NA	NA	NA	4437	NM_001204233	20750	Mm.288474	NM_009263	ENSMUSG00000029304	Spp1	2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1	secreted phosphoprotein 1	protein-coding	0.005000	0.363184	
mm_79565.1	chr9	58131795	58131995	+	1	NA	NA	NA	-2180	NM_001162476	20897	Mm.10801	NM_009291	ENSMUSG00000032327	Stra6	AI891933	stimulated by retinoic acid gene 6	protein-coding	0.015000	0.532338	
mm_72364.1	chr8	80811501	80811701	+	1	NA	NA	NA	68878	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.005000	0.497512	
mm_16022.1	chr2	167504046	167504246	+	1	NA	NA	NA	-11272	NM_170756	263876	Mm.34342	NM_170756	ENSMUSG00000047030	Spata2	AI504642|mKIAA0757	spermatogenesis associated 2	protein-coding	0.075000	0.656716	
mm_58862.1	chr7	16907972	16908172	+	1	NA	NA	NA	1582	NM_008967	19222	Mm.287572	NM_008967	ENSMUSG00000043017	Ptgir	IP|PGI2	prostaglandin I receptor (IP)	protein-coding	0.010000	0.502488	-25(CTCTTTATAGAA,+,0.00)
mm_79739.1	chr9	62345333	62345533	+	1	NA	NA	NA	4090	NM_009672	11737	Mm.269088	NM_009672	ENSMUSG00000032249	Anp32a	Anp32|I1PP2A|LANP|PHAP1|W91701|pp32	acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	protein-coding	0.005000	0.532338	
mm_126317.1	chr15	79687905	79688105	+	1	NA	NA	NA	-133	NM_028792	74158	Mm.323393	NM_028792	ENSMUSG00000022426	Josd1	1300006C06Rik|mKIAA0063	Josephin domain containing 1	protein-coding	0.120000	0.711443	
mm_99419.1	chr11	102316754	102316954	+	1	NA	NA	NA	433	NM_001044383	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.110000	0.701493	
mm_43067.1	chr5	124444370	124444570	+	1	NA	NA	NA	-1029	NM_001310723	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.015000	0.442786	
mm_114001.1	chr13	52585151	52585351	+	1	NA	NA	NA	1814	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.015000	0.482587	
mm_140312.1	chr17	86167722	86167922	+	1	NA	NA	NA	37	NM_011104	18754	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0.180000	0.810945	
mm_73606.1	chr8	109999257	109999457	+	1	NA	NA	NA	8921	NM_146214	234724	Mm.28110	NM_146214	ENSMUSG00000001670	Tat	-	tyrosine aminotransferase	protein-coding	0.025000	0.457711	
mm_167908.1	chrX	83779745	83779945	+	1	NA	NA	NA	-291921	NM_021898	100502723	Mm.383210	NM_021898	ENSMUSG00000035522	Tsga8	Halap-X|Halapx	testis specific gene A8	protein-coding	0.000000	0.402985	
mm_111513.1	chr12	99627853	99628053	-	1	NA	NA	NA	21	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.125000	0.771144	
mm_36437.1	chr4	82295780	82295980	-	1	NA	NA	NA	209899	NM_001286127	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.005000	0.318408	
mm_102420.1	chr11	59227805	59228005	-	1	NA	NA	NA	257	NM_001130408	11840	Mm.371546	NM_007476	ENSMUSG00000048076	Arf1	-	ADP-ribosylation factor 1	protein-coding	0.110000	0.746269	
mm_109451.1	chr12	111040736	111040936	+	1	NA	NA	NA	1038	NM_198023	217864	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0.010000	0.462687	
mm_117202.1	chr13	64066044	64066244	-	1	NA	NA	NA	23057	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.005000	0.472637	
mm_14105.1	chr2	125673005	125673205	+	1	NA	NA	NA	5	NM_025613	58521	Mm.425101	NM_025613	ENSMUSG00000091337	Eid1	2610002K20Rik|Cri1|EID-1|ORF12|PNAS-22|PTD014	EP300 interacting inhibitor of differentiation 1	protein-coding	0.135000	0.666667	
mm_24010.1	chr3	87376363	87376563	+	1	NA	NA	NA	76	NM_001136236	229499	Mm.255203	NM_153090	ENSMUSG00000059994	Fcrl1	A230020G22Rik|Bxmas1|Bxmh1|Bxmh1b|Fcrh1|Fcrh1l|Fcrh1s|Ifgp1	Fc receptor-like 1	protein-coding	0.015000	0.512438	
mm_166271.1	chr5	90472024	90472224	-	1	NA	NA	NA	11254	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.005000	0.457711	-36(GTGTTTAAAAGA,-,0.00)
mm_63751.1	chr7	131044196	131044396	+	1	NA	NA	NA	12220	NM_007769	12945	Mm.4138	NM_007769	ENSMUSG00000047517	Dmbt1	CRP|CRP-[a]|CRP-[b]|Crpd|DBMT1|gp300|p80	deleted in malignant brain tumors 1	protein-coding	0.005000	0.467662	
mm_145206.1	chr18	50019644	50019844	+	1	NA	NA	NA	-33538	NM_134131	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|ENSMUSG00000073567|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.015000	0.462687	
mm_35589.1	chr4	42949422	42949622	-	1	NA	NA	NA	-3572	NM_019874	56323	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.020000	0.502488	
mm_339.1	chr1	30718630	30718830	+	1	NA	NA	NA	144526	NM_001081080	213109	Mm.194486	NM_025871	ENSMUSG00000048874	Phf3	2310061N19Rik|mKIAA0244	PHD finger protein 3	protein-coding	0.010000	0.422886	
mm_116057.1	chr13	27509517	27509717	-	1	NA	NA	NA	3596	NM_023741	74188	Mm.46090	NM_023741	ENSMUSG00000021346	Prl8a8	1600032B14Rik|Ghd14|PLP-Cgamma|Prlpc3	prolactin family 8, subfamily a, member 81	protein-coding	0.010000	0.353234	
mm_171709.1	chr4	76728960	76729160	+	1	NA	NA	NA	-1450774	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Tmem261	1700027K24Rik|3110001D03Rik	transmembrane protein 261	protein-coding	0.070000	0.661692	
mm_143935.1	chr17	86167371	86167571	-	1	NA	NA	NA	-314	NM_011104	18754	Mm.24614	NM_011104	ENSMUSG00000045038	Prkce	5830406C15Rik|PKC[e]|PKCepsilon|Pkce|R75156	protein kinase C, epsilon	protein-coding	0.115000	0.646766	
mm_117491.1	chr13	78196382	78196582	-	1	NA	NA	NA	-33	NM_001347539	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.020000	0.407960	
mm_45630.1	chr5	76304875	76305075	-	1	NA	NA	NA	-183	NM_001289826	12753	Mm.3552	NM_007715	ENSMUSG00000029238	Clock	5330400M04Rik|KAT13D	circadian locomotor output cycles kaput	protein-coding	0.125000	0.761194	
mm_158807.1	chrX	167264199	167264399	-	1	NA	NA	NA	30	NM_001313761	170744	Mm.196676	NM_133212	ENSMUSG00000040522	Tlr8	-	toll-like receptor 8	protein-coding	0.010000	0.402985	
mm_87208.1	chr10	39732099	39732299	+	1	NA	NA	NA	39	NM_011264	19714	Mm.439723	NM_011264	ENSMUSG00000019841	Rev3l	Rev|Rev3|Sez4	REV3 like, DNA directed polymerase zeta catalytic subunit	protein-coding	0.115000	0.701493	
mm_978.1	chr1	58393412	58393612	+	1	NA	NA	NA	376	NM_025824	66882	Mm.21848	NM_025824	ENSMUSG00000051223	Bzw1	1200015E15Rik|mKIAA0005	basic leucine zipper and W2 domains 1	protein-coding	0.180000	0.796020	
mm_59703.1	chr7	28692917	28693117	+	1	NA	NA	NA	-127	NM_001163702	233040	Mm.116116	NM_207238	ENSMUSG00000037463	Fbxo27	E130008B10Rik|FBG5|Gm161	F-box protein 27	protein-coding	0.045000	0.587065	
mm_120799.1	chr14	74744114	74744314	+	1	NA	NA	NA	11917	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.005000	0.318408	
mm_87562.1	chr10	56115253	56115453	+	1	NA	NA	NA	8436	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	male-specific lethal 3-like 2 (Drosophila)	protein-coding	0.080000	0.621891	
mm_71619.1	chr8	57323231	57323431	+	1	NA	NA	NA	2348	NM_010402	15111	Mm.430844	NM_010402	ENSMUSG00000038193	Hand2	AI225906|AI661148|Ehand2|Hed|Th2|Thing2|bHLHa26|dHAND	heart and neural crest derivatives expressed transcript 2	protein-coding	0.020000	0.502488	
mm_93210.1	chr10	94944441	94944641	-	1	NA	NA	NA	37	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.145000	0.781095	
mm_134524.1	chr16	19236724	19236924	-	1	NA	NA	NA	49917	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.015000	0.597015	
mm_130074.1	chr15	89356355	89356555	-	1	NA	NA	NA	736	NM_001271601	52683	Mm.143167	NM_001115132	ENSMUSG00000008690	Ncaph2	-	non-SMC condensin II complex, subunit H2	protein-coding	0.040000	0.502488	
mm_128593.1	chr15	58125583	58125783	-	1	NA	NA	NA	9399	NM_027435	70472	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0.010000	0.402985	-7(TTTTTTAAAGCT,+,0.00),69(CACTATAAATGG,-,0.00)
mm_16140.1	chr2	170731839	170732039	+	1	NA	NA	NA	132	NM_001163686	76829	Mm.41633	NM_029761	ENSMUSG00000027560	Dok5	2700055C10Rik	docking protein 5	protein-coding	0.075000	0.656716	
mm_66373.1	chr7	43656564	43656764	-	1	NA	NA	NA	3497	NM_031181	83382	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.020000	0.527363	
mm_120060.1	chr14	56850575	56850775	+	1	NA	NA	NA	-37120	NM_029498	76007	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.015000	0.447761	
mm_53167.1	chr6	125337704	125337904	+	1	NA	NA	NA	-11919	NM_011609	21937	Mm.1258	NM_011609	ENSMUSG00000030341	Tnfrsf1a	CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R	tumor necrosis factor receptor superfamily, member 1a	protein-coding	0.005000	0.477612	
mm_36305.1	chr4	68954319	68954519	-	1	NA	NA	NA	-22	NM_019967	56710	Mm.248788	NM_019967	ENSMUSG00000028351	Brinp1	BRINP|Dbc1|Dbccr1|Fam5a	bone morphogenic protein/retinoic acid inducible neural specific 1	protein-coding	0.085000	0.686567	
mm_33072.1	chr4	123787749	123787949	+	1	NA	NA	NA	-26	NM_183163	230726	Mm.37334	NM_183163	ENSMUSG00000043333	Rhbdl2	9130416B15|RRP2	rhomboid, veinlet-like 2 (Drosophila)	protein-coding	0.030000	0.641791	
mm_59818.1	chr7	29238210	29238410	+	1	NA	NA	NA	-13	NM_001110201	77254	Mm.36699	NM_029887	ENSMUSG00000030588	Yif1b	9430029K10Rik|Yip1b	Yip1 interacting factor homolog B (S. cerevisiae)	protein-coding	0.080000	0.616915	
mm_147029.1	chr18	34703760	34703960	-	1	NA	NA	NA	16527	NM_010280	14587	Mm.16520	NM_010280	ENSMUSG00000024366	Gfra3	GFRalpha3|Y15110	glial cell line derived neurotrophic factor family receptor alpha 3	protein-coding	0.030000	0.447761	
mm_84775.1	chr9	75683751	75683951	-	1	NA	NA	NA	205	NM_001164790	20255	Mm.2386	NM_009130	ENSMUSG00000032181	Scg3	1B1075|AI385542|Chgd|SgIII	secretogranin III	protein-coding	0.045000	0.626866	
mm_163847.1	chr14	19418088	19418288	+	1	NA	NA	NA	184399	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.020000	0.348259	
mm_170445.1	chr18	83044199	83044399	-	1	NA	NA	NA	-123739	NR_033307	75853	Mm.420737	NR_033307		4930592I03Rik	-	RIKEN cDNA 4930592I03 gene	ncRNA	0.030000	0.492537	
mm_46080.1	chr5	92326723	92326923	-	1	NA	NA	NA	1256	NM_008599	17329	Mm.766	NM_008599	ENSMUSG00000029417	Cxcl9	BB139920|CMK|Mig|MuMIG|Scyb9|crg-10	chemokine (C-X-C motif) ligand 9	protein-coding	0.030000	0.457711	
mm_81365.1	chr9	108783717	108783917	+	1	NA	NA	NA	-12177	NM_029634	76500	Mm.276336	NM_029634	ENSMUSG00000032599	Ip6k2	1500005N04Rik|AW050208|Ihpk2	inositol hexaphosphate kinase 2	protein-coding	0.115000	0.726368	
mm_4897.1	chr1	189774940	189775140	+	1	NA	NA	NA	46772	NM_008976	19250	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|OTTMUSG00000022087|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	0.005000	0.587065	
mm_18702.1	chr2	71749989	71750189	-	1	NA	NA	NA	30672	NR_037979	381371	Mm.330284	NM_201366	ENSMUSG00000064263	Platr26	Gm1631	pluripotency associated transcript 26	ncRNA	0.025000	0.452736	
mm_59199.1	chr7	24507005	24507205	+	1	NA	NA	NA	18	NR_110958	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.095000	0.601990	-6(CTATTTATAAGG,-,0.00)
mm_138490.1	chr17	35200282	35200482	+	1	NA	NA	NA	1625	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.030000	0.577114	
mm_169873.1	chr16	36875122	36875322	+	1	NA	NA	NA	-396	NM_134111	106389	Mm.432078	NM_134111	ENSMUSG00000022838	Eaf2	AW048865|FESTA-L|FESTA-S|Festa|Traits|U19	ELL associated factor 2	protein-coding	0.120000	0.716418	
mm_8664.1	chr1	156654426	156654626	-	1	NA	NA	NA	19813	NM_023141	30935	Mm.206737	NM_023141	ENSMUSG00000060519	Tor3a	Adir	torsin family 3, member A	protein-coding	0.000000	0.388060	45(TCTTATAAAGCA,+,0.00)
mm_39186.1	chr4	155840942	155841142	-	1	NA	NA	NA	1362	NM_024263	74761	Mm.159028	NM_024263	ENSMUSG00000029070	Mxra8	1200013A08Rik|1700095D18Rik|AI131686|Asp3|Dicam	matrix-remodelling associated 8	protein-coding	0.100000	0.671642	
mm_116855.1	chr13	54762621	54762821	-	1	NA	NA	NA	3719	NM_033610	104069	Mm.200843	NM_033610	ENSMUSG00000034891	Sncb	AI838531|betaSYN	synuclein, beta	protein-coding	0.010000	0.597015	
mm_155337.1	chrX	66656814	66657014	+	1	NA	NA	NA	3755	NM_198863	245450	Mm.336081	NM_198863	ENSMUSG00000036790	Slitrk2	A930040J07	SLIT and NTRK-like family, member 2	protein-coding	0.015000	0.313433	
mm_34418.1	chr4	145274055	145274255	+	1	NA	NA	NA	-27285	NM_011610	21938	Mm.235328	NM_011610	ENSMUSG00000028599	Tnfrsf1b	CD120b|TNF-R-II|TNF-R2|TNF-R75|TNF-alphaR2|TNFBR|TNFR80|TNFRII|TNFalpha-R2|Tnfr-1|Tnfr2|p75	tumor necrosis factor receptor superfamily, member 1b	protein-coding	0.010000	0.527363	
mm_41409.1	chr5	90787369	90787569	+	1	NA	NA	NA	1368	NM_203320	330122	Mm.244289	NM_203320	ENSMUSG00000029379	Cxcl3	Dcip1|Gm1960	chemokine (C-X-C motif) ligand 3	protein-coding	0.025000	0.477612	
mm_86762.1	chr10	19933506	19933706	+	1	NA	NA	NA	-920	NM_008580	26408	Mm.6595	NM_008580	ENSMUSG00000071369	Map3k5	7420452D20Rik|ASK|ASK1|MAPKKK5|Mekk5	mitogen-activated protein kinase kinase kinase 5	protein-coding	0.085000	0.577114	
mm_140737.1	chr17	15706054	15706254	-	1	NA	NA	NA	1187	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.030000	0.527363	
mm_85550.1	chr9	106685647	106685847	-	1	NA	NA	NA	69	NM_011573	21767	Mm.22266	NM_011573	ENSMUSG00000040813	Tex264	TEG-264	testis expressed gene 264	protein-coding	0.105000	0.756219	
mm_7801.1	chr1	131525471	131525671	-	1	NA	NA	NA	1790	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.040000	0.547264	
mm_44787.1	chr5	32146823	32147023	-	1	NA	NA	NA	10451	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.020000	0.597015	
mm_27559.1	chr3	58525770	58525970	-	1	NA	NA	NA	14	NM_030685	28146	Mm.29702	NM_030685	ENSMUSG00000027808	Serp1	D3Ucla1|Ramp4	stress-associated endoplasmic reticulum protein 1	protein-coding	0.135000	0.731343	
mm_125809.1	chr15	74931086	74931286	+	1	NA	NA	NA	-23865	NM_001164039	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.005000	0.542289	-35(TGCTATAAAAGG,-,0.00)
mm_164667.1	chr17	44709904	44710104	-	1	NA	NA	NA	26172	NR_073425	12393	Mm.391013	NM_009820	ENSMUSG00000039153	Runx2	AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a	runt related transcription factor 2	protein-coding	0.025000	0.472637	
mm_83824.1	chr9	53975006	53975206	-	1	NA	NA	NA	195	NM_177769	270162	Mm.259791	NM_177769	ENSMUSG00000041986	Elmod1	4831417L10|AI428506|AI834991	ELMO/CED-12 domain containing 1	protein-coding	0.115000	0.711443	
mm_120020.1	chr14	55761322	55761522	+	1	NA	NA	NA	-6	NM_020490	57260	Mm.159670	NM_020490	ENSMUSG00000040432	Ltb4r2	5830462O07Rik|BLT2|LTB4-R 2|LTB4-R-2|LTB4-R2	leukotriene B4 receptor 2	protein-coding	0.015000	0.592040	
mm_161865.1	chr18	34006249	34006449	-	1	NA	NA	NA	857	NM_013512	13824	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	0.115000	0.736318	
mm_162023.1	chr19	46148240	46148440	-	1	NA	NA	NA	-15	NM_008852	18742	Mm.6255	NM_008852	ENSMUSG00000025229	Pitx3	Ptx3|ak	paired-like homeodomain transcription factor 3	protein-coding	0.080000	0.756219	
mm_15847.1	chr2	164771592	164771792	+	1	NA	NA	NA	1763	NM_026785	68612	Mm.89830	NM_026785	ENSMUSG00000001403	Ube2c	1110015A16Rik|D2Ertd695e	ubiquitin-conjugating enzyme E2C	protein-coding	0.025000	0.512438	
mm_37643.1	chr4	128618222	128618422	-	1	NA	NA	NA	297	NM_205823	384059	Mm.331901	NM_205823	ENSMUSG00000062545	Tlr12	Gm1365|Tlr11	toll-like receptor 12	protein-coding	0.035000	0.582090	
mm_152221.1	chr19	8478932	8479132	-	1	NA	NA	NA	-73927	NM_177002	319800	Mm.426083	NM_177002	ENSMUSG00000052562	Slc22a30	AA986766|C730048C13Rik|UST1R	solute carrier family 22, member 30	protein-coding	0.005000	0.373134	
mm_171901.1	chr5	4192296	4192496	+	1	NA	NA	NA	29	NM_001042670	208595	Mm.129815	NM_001042670	ENSMUSG00000053178	Mterf1b	ENSMUSG00000053178|Gm9897	mitochondrial transcription termination factor 1b	protein-coding	0.105000	0.681592	
mm_127229.1	chr15	99404322	99404522	+	1	NA	NA	NA	11203	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.030000	0.497512	
mm_82403.1	chr9	14770924	14771124	-	1	NA	NA	NA	6	NM_029306	69325	Mm.440453	NM_029306	ENSMUSG00000031927	1700012B09Rik	1700007P19Rik	RIKEN cDNA 1700012B09 gene	protein-coding	0.055000	0.666667	
mm_76056.1	chr8	77724197	77724397	-	1	NA	NA	NA	155	NM_010332	13617	Mm.283168	NM_010332	ENSMUSG00000031616	Ednra	ET-AR|ETa|Gpcr10	endothelin receptor type A	protein-coding	0.045000	0.606965	
mm_95372.1	chr11	49086967	49087167	+	1	NA	NA	NA	50	NM_008330	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.020000	0.462687	
mm_106054.1	chr11	116110135	116110335	-	1	NA	NA	NA	0	NM_001205081	217333	Mm.347770	NM_172570	ENSMUSG00000020773	Trim47	2210023F24Rik	tripartite motif-containing 47	protein-coding	0.085000	0.726368	
mm_65152.1	chr7	19622289	19622489	-	1	NA	NA	NA	7049	NM_001290457	19698	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.020000	0.542289	
mm_18958.1	chr2	76791189	76791389	-	1	NA	NA	NA	115974	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.020000	0.472637	
mm_22419.1	chr2	181581050	181581250	-	1	NA	NA	NA	823	NM_026765	68556	Mm.232400	NM_026765	ENSMUSG00000089917	Uckl1	1110007H10Rik|Urkl1	uridine-cytidine kinase 1-like 1	protein-coding	0.040000	0.562189	
mm_2925.1	chr1	132143300	132143500	+	1	NA	NA	NA	-3715	NM_008795	18557	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.015000	0.497512	-53(TTCCTTTAAAGC,-,0.00),-52(TCCTTTAAAGCT,+,0.00),-51(CCTTTAAAGCTC,+,0.00)
mm_44980.1	chr5	36830552	36830752	-	1	NA	NA	NA	-3	NM_008550	17160	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0.105000	0.706468	
mm_67073.1	chr7	68157491	68157691	-	1	NA	NA	NA	106642	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.030000	0.502488	
mm_13745.1	chr2	118120154	118120354	+	1	NA	NA	NA	8378	NM_001313914	21825	Mm.4159	NM_011580	ENSMUSG00000040152	Thbs1	TSP-1|TSP1|Thbs-1|tbsp1	thrombospondin 1	protein-coding	0.050000	0.542289	
mm_113396.1	chr13	33084000	33084200	+	1	NA	NA	NA	-3	NM_173052	282663	Mm.314490	NM_173052	ENSMUSG00000051029	Serpinb1b	6330533H24Rik|EIB|Serpin1b1|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 1b	protein-coding	0.005000	0.502488	
mm_7795.1	chr1	131525051	131525251	-	1	NA	NA	NA	2210	NM_001081011	14270	Mm.276259	NM_019520	ENSMUSG00000026425	Srgap2	9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3	SLIT-ROBO Rho GTPase activating protein 2	protein-coding	0.060000	0.626866	
mm_127480.1	chr15	101274094	101274294	+	1	NA	NA	NA	7348	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.035000	0.567164	
mm_148136.1	chr18	76015554	76015754	-	1	NA	NA	NA	82817	NR_045365	73009	Mm.443541	NR_045365		2900057B20Rik	-	RIKEN cDNA 2900057B20 gene	ncRNA	0.010000	0.532338	
mm_77002.1	chr8	107393046	107393246	-	1	NA	NA	NA	10059	NM_008706	18104	Mm.252	NM_008706	ENSMUSG00000003849	Nqo1	AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1	NAD(P)H dehydrogenase, quinone 1	protein-coding	0.010000	0.462687	
mm_23386.1	chr3	56575567	56575767	+	1	NA	NA	NA	-391966	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.010000	0.368159	
mm_11957.1	chr2	53054456	53054656	+	1	NA	NA	NA	136631	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.020000	0.522388	
mm_72412.1	chr8	81825044	81825244	+	1	NA	NA	NA	482582	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.010000	0.407960	
mm_129736.1	chr15	82147417	82147617	-	1	NA	NA	NA	248	NM_033218	20788	Mm.9002	NM_033218	ENSMUSG00000022463	Srebf2	AI608257|SREBP-2|SREBP2|SREBP2gc|bHLHd2|lop13|nuc	sterol regulatory element binding factor 2	protein-coding	0.150000	0.751244	
mm_49416.1	chr6	28888390	28888590	+	1	NA	NA	NA	-56743	NM_138682	192198	Mm.443660	NM_138682	ENSMUSG00000049939	Lrrc4	MBAG1|NGL-2|NGL2|NLG-2|Nag14	leucine rich repeat containing 4	protein-coding	0.020000	0.462687	
mm_83347.1	chr9	44320271	44320471	-	1	NA	NA	NA	-89	NM_027909	71764	Mm.491174	NM_027909	ENSMUSG00000032120	C2cd2l	1300006O23Rik|Tmem24	C2 calcium-dependent domain containing 2-like	protein-coding	0.080000	0.656716	55(CTCCTTTAAGGG,-,0.00),56(TCCTTTAAGGGC,+,0.00),57(CCTTTAAGGGCG,+,0.00)
mm_12073.1	chr2	59656414	59656614	+	1	NA	NA	NA	9745	NM_001290659	66860	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.000000	0.288557	
mm_79885.1	chr9	65294063	65294263	+	1	NA	NA	NA	-97	NM_001044389	270166	Mm.30088	NM_011802	ENSMUSG00000015357	Clpx	AU014732|E330029I21	caseinolytic mitochondrial matrix peptidase chaperone subunit	protein-coding	0.110000	0.631841	
mm_101992.1	chr11	50943635	50943835	-	1	NA	NA	NA	9897	NM_008936	19127	Mm.1386	NM_008936	ENSMUSG00000044542	Prop1	Prop-1|df	paired like homeodomain factor 1	protein-coding	0.040000	0.572139	
mm_127236.1	chr15	99408607	99408807	+	1	NA	NA	NA	15488	NM_001171035	110213	Mm.16769	NM_026669	ENSMUSG00000023010	Tmbim6	5031406P05Rik|Bi1|Tegt	transmembrane BAX inhibitor motif containing 6	protein-coding	0.025000	0.477612	
mm_40394.1	chr5	52807037	52807237	+	1	NA	NA	NA	24082	NM_030185	78796	Mm.266886	NM_030185	ENSMUSG00000029179	Zcchc4	4930449I23Rik	zinc finger, CCHC domain containing 4	protein-coding	0.020000	0.422886	
mm_11034.1	chr2	26916711	26916911	+	1	NA	NA	NA	-281	NM_013677	20930	Mm.347512	NM_013677	ENSMUSG00000015790	Surf1	0610010F23Rik|Surf-1	surfeit gene 1	protein-coding	0.060000	0.582090	
mm_83249.1	chr9	42399967	42400167	-	1	NA	NA	NA	-138	NM_001324548	21683	Mm.42209	NM_009347	ENSMUSG00000037705	Tecta	Tctna	tectorin alpha	protein-coding	0.005000	0.412935	86(CTCTTTTTAAAG,-,0.00),87(TCTTTTTAAAGG,-,0.00),88(CTTTTTAAAGGA,+,0.00)
mm_67406.1	chr7	80056089	80056289	-	1	NA	NA	NA	19068	NR_045695	100859962	Mm.392575	NR_045695	ENSMUSG00000108714	Gm21057	-	predicted gene, 21057	ncRNA	0.020000	0.537313	
mm_121007.1	chr14	79521866	79522066	+	1	NA	NA	NA	6292	NM_001286411	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.010000	0.407960	
mm_120336.1	chr14	63451363	63451563	+	1	NA	NA	NA	15069	NM_177628	219148	Mm.37882	NM_177628	ENSMUSG00000035095	Fam167a	A030013D21	family with sequence similarity 167, member A	protein-coding	0.005000	0.562189	
mm_146440.1	chr18	84934559	84934759	+	1	NA	NA	NA	-366	NM_015798	50764	Mm.28369	NM_015798	ENSMUSG00000034391	Fbxo15	AU019763|Fbx15|ecat3	F-box protein 15	protein-coding	0.005000	0.467662	
mm_113283.1	chr13	30136525	30136725	+	1	NA	NA	NA	135	NM_153546	218121	Mm.89682	NM_153546	ENSMUSG00000038732	Mboat1	9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1	membrane bound O-acyltransferase domain containing 1	protein-coding	0.085000	0.726368	
mm_97718.1	chr11	80209015	80209215	+	1	NA	NA	NA	60	NM_021536	59040	Mm.489674	NM_021536	ENSMUSG00000017686	Rhot1	2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1	ras homolog family member T1	protein-coding	0.165000	0.781095	
mm_167635.1	chr9	63148825	63149025	-	1	NA	NA	NA	36	NM_001163758	207667	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.185000	0.825871	
mm_57737.1	chr6	128974895	128975095	-	1	NA	NA	NA	34	NR_045009	100504591	Mm.441029	NR_045009		Gm15987	OTTMUSG00000028624	predicted gene 15987	ncRNA	0.000000	0.437811	
mm_113525.1	chr13	37825969	37826169	+	1	NA	NA	NA	31	NM_026830	68750	Mm.491109	NM_026830	ENSMUSG00000039087	Rreb1	1110037N09Rik|AA414966|B930013M22Rik	ras responsive element binding protein 1	protein-coding	0.090000	0.686567	
mm_32614.1	chr4	114163327	114163527	+	1	NA	NA	NA	43	NM_001166027	230623	Mm.124482	NM_177669	ENSMUSG00000057977	Skint11	A630098G03Rik|Gm569	selection and upkeep of intraepithelial T cells 11	protein-coding	0.000000	0.402985	
mm_8714.1	chr1	158969646	158969846	-	1	NA	NA	NA	-12308	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding	0.010000	0.482587	
mm_17930.1	chr2	35462713	35462913	-	1	NA	NA	NA	-1364	NM_001145821	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.025000	0.507463	
mm_56132.1	chr6	87672096	87672296	-	1	NA	NA	NA	-28	NM_001170489	72103	Mm.31770	NM_024251	ENSMUSG00000030051	Aplf	2010301N04Rik|AI452191	aprataxin and PNKP like factor	protein-coding	0.030000	0.512438	34(CAGTTTTTAAGC,-,0.00)
mm_81048.1	chr9	105491799	105491999	+	1	NA	NA	NA	3234	NM_175025	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.020000	0.422886	
mm_92285.1	chr10	71343111	71343311	-	1	NA	NA	NA	1638	NM_134007	52637	Mm.254114	NM_134007	ENSMUSG00000037710	Cisd1	AU043990|AW743335|D10Ertd214e|Zcd1|mitoNEET	CDGSH iron sulfur domain 1	protein-coding	0.005000	0.412935	-36(AGCTATTAAAGA,-,0.00)
mm_14979.1	chr2	152109275	152109475	+	1	NA	NA	NA	3851	NM_029688	76650	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.000000	0.487562	
mm_167790.1	chr9	123510401	123510601	+	1	NA	NA	NA	-19381	NM_030692	83493	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.010000	0.393035	
mm_172977.1	chr9	95291961	95292161	+	1	NA	NA	NA	115209	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.035000	0.527363	
mm_26911.1	chr3	20035176	20035376	-	1	NA	NA	NA	34	NM_001146323	12807	Mm.291533	NM_080634	ENSMUSG00000027615	Hps3	coa	Hermansky-Pudlak syndrome 3	protein-coding	0.105000	0.686567	-90(GCCTCTTTAAGG,-,0.00),-88(CTCTTTAAGGAG,+,0.00)
mm_154592.1	chrX	7580388	7580588	+	1	NA	NA	NA	5	NM_001199348	20371	Mm.182291	NM_054039	ENSMUSG00000039521	Foxp3	JM2|scurfin|sf	forkhead box P3	protein-coding	0.010000	0.497512	
mm_58120.1	chr6	139501813	139502013	-	1	NA	NA	NA	-4	NM_001128090	632971	Mm.475610	NM_001128090	ENSMUSG00000092164	Rergl	EG632971	RERG/RAS-like	protein-coding	0.000000	0.427861	-47(AGCCATAAAAGG,-,0.00)
mm_62200.1	chr7	97788710	97788910	+	1	NA	NA	NA	-50563	NM_175105	66333	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.135000	0.766169	
mm_44506.1	chr5	24030208	24030408	-	1	NA	NA	NA	4	NM_001310471	84652	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.125000	0.736318	
mm_101052.1	chr11	8663991	8664191	-	1	NA	NA	NA	444	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.075000	0.641791	
mm_103857.1	chr11	83286626	83286826	-	1	NA	NA	NA	0	NM_001166028	237890	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0.000000	0.507463	
mm_152643.1	chr19	12527451	12527651	-	1	NA	NA	NA	-25555	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.015000	0.407960	
mm_161638.1	chr16	94008757	94008957	-	1	NA	NA	NA	-20	NM_019500	56173	Mm.328716	NM_019500	ENSMUSG00000047109	Cldn14	AI851731	claudin 14	protein-coding	0.045000	0.542289	-32(GACTTTATGAGC,-,0.00),2(CTTTTTAAAAAG,+,0.00),2(CTTTTTAAAAAG,-,0.00)
mm_81666.1	chr9	111024287	111024487	+	1	NA	NA	NA	5095	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.035000	0.547264	
mm_4846.1	chr1	186967579	186967779	+	1	NA	NA	NA	263	NM_033077	110957	Mm.108054	NM_033077	ENSMUSG00000039224	D1Pas1	Pl10	DNA segment, Chr 1, Pasteur Institute 1	protein-coding	0.115000	0.681592	
mm_26165.1	chr3	138280320	138280520	+	1	NA	NA	NA	2775	NM_007409	11522	Mm.2409	NM_007409	ENSMUSG00000074207	Adh1	ADH-AA|AI194826|Adh-1|Adh-1-t|Adh-1e|Adh-1t|Adh-3e|Adh1-e|Adh1-t|Adh1tl|Adh3-e	alcohol dehydrogenase 1 (class I)	protein-coding	0.020000	0.502488	
mm_39463.1	chr5	18014333	18014533	+	1	NA	NA	NA	51863	NM_001081143	242851	Mm.332230	NM_001081143	ENSMUSG00000028777	Gnat3	Ggust|Gtn	guanine nucleotide binding protein, alpha transducing 3	protein-coding	0.005000	0.452736	
mm_77102.1	chr8	111030817	111031017	-	1	NA	NA	NA	834	NM_001190786	234733	Mm.482176	NM_172284	ENSMUSG00000033658	Ddx19b	2810457M08Rik|4921519L13Rik|AW260119	DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b	protein-coding	0.015000	0.427861	
mm_72822.1	chr8	88199131	88199331	+	1	NA	NA	NA	18	NM_001164498	214627	Mm.491211	NM_001164497	ENSMUSG00000036779	Papd5	5730445M16Rik|5830428A09	PAP associated domain containing 5	protein-coding	0.165000	0.781095	
mm_162668.1	chr10	7063067	7063267	-	1	NA	NA	NA	-39982	NM_001033391	320495	Mm.331674	NM_001033391	ENSMUSG00000064065	Ipcef1	A130090K04Rik	interaction protein for cytohesin exchange factors 1	protein-coding	0.010000	0.452736	
mm_82974.1	chr9	35844088	35844288	-	1	NA	NA	NA	-38	NM_029863	77080	Mm.159846	NM_029863	ENSMUSG00000047980	9230110F15Rik	Pate-A|Pate5|mANLP3	RIKEN cDNA 9230110F15 gene	protein-coding	0.005000	0.507463	
mm_22501.1	chr3	7366608	7366808	+	1	NA	NA	NA	104	NM_008862	18767	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	0.080000	0.696517	
mm_54719.1	chr6	40431480	40431680	-	1	NA	NA	NA	4553	NM_175528	243780	Mm.333006	NM_175528	ENSMUSG00000037172	E330009J07Rik	AI841796|Lchn|mKIAA1147	RIKEN cDNA E330009J07 gene	protein-coding	0.010000	0.522388	
mm_78558.1	chr9	35672570	35672770	+	1	NA	NA	NA	3031	NM_001033421	330921	Mm.479701	NM_001033421	ENSMUSG00000074452	Pate2	Gm846|Pate-M|mANLP1	prostate and testis expressed 2	protein-coding	0.010000	0.407960	
mm_4328.1	chr1	171854076	171854276	+	1	NA	NA	NA	14479	NM_013489	12523	Mm.259115	NM_013489	ENSMUSG00000038147	Cd84	A130013D22Rik|CDw84|SLAMF5	CD84 antigen	protein-coding	0.000000	0.442786	
mm_107753.1	chr12	59070121	59070321	+	1	NA	NA	NA	3302	NM_008891	18949	Mm.22347	NM_008891	ENSMUSG00000020994	Pnn	AU045199|D12Ertd512e	pinin	protein-coding	0.040000	0.472637	
mm_58969.1	chr7	18992327	18992527	+	1	NA	NA	NA	1182	NM_145579	232934	Mm.440069	NM_145579	ENSMUSG00000048481	Mypop	Myodysa|P42pop	Myb-related transcription factor, partner of profilin	protein-coding	0.100000	0.686567	
mm_98604.1	chr11	95837175	95837375	+	1	NA	NA	NA	-5020	NM_023121	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.030000	0.567164	
mm_153759.1	chr19	45451124	45451324	-	1	NA	NA	NA	87490	NM_001037758	12234	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.035000	0.487562	-20(GCTTATAGACCG,+,0.00)
mm_81810.1	chr9	117859881	117860081	+	1	NA	NA	NA	-180541	NM_001286508	27215	Mm.92705	NM_013727	ENSMUSG00000039285	Azi2	AA410145|AZ2	5-azacytidine induced gene 2	protein-coding	0.030000	0.537313	
mm_109515.1	chr12	111454215	111454415	+	1	NA	NA	NA	11654	NM_009396	21928	Mm.255332	NM_009396	ENSMUSG00000021281	Tnfaip2	B94|Exoc3l3|M-sec|Tnfip2|tnfb94	tumor necrosis factor, alpha-induced protein 2	protein-coding	0.010000	0.537313	
mm_114955.1	chr13	97065508	97065708	+	1	NA	NA	NA	-1679	NM_001146045	320557	Mm.458280	NM_001100458	ENSMUSG00000041817	Fam169a	B230112C05Rik|SLAP75	family with sequence similarity 169, member A	protein-coding	0.025000	0.497512	-34(CTGTATAAAAAC,-,0.00)
mm_73294.1	chr8	104962363	104962563	+	1	NA	NA	NA	745	NM_197999	72361	Mm.26580	NM_197999	ENSMUSG00000031877	Ces2g	2210023G05Rik|Ces2l	carboxylesterase 2G	protein-coding	0.010000	0.517413	
mm_132761.1	chr16	44578114	44578314	+	1	NA	NA	NA	-19344	NM_172506	117606	Mm.41561	NM_172506	ENSMUSG00000022687	Boc	4732455C11|mFLJ00376	biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein	protein-coding	0.010000	0.502488	
mm_141321.1	chr17	28437940	28438140	-	1	NA	NA	NA	48109	NM_010220	14229	Mm.276405	NM_010220	ENSMUSG00000024222	Fkbp5	D17Ertd592e|Dit1|FKBP-5|FKBP51	FK506 binding protein 5	protein-coding	0.005000	0.407960	
mm_30625.1	chr4	8735837	8736037	+	1	NA	NA	NA	45531	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.010000	0.447761	
mm_108778.1	chr12	89813203	89813403	+	1	NA	NA	NA	820	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.020000	0.422886	-71(TTTTTTAAACCG,+,0.00)
mm_99570.1	chr11	103961732	103961932	+	1	NA	NA	NA	-4893	NM_001304574	11841	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.010000	0.492537	
mm_9792.1	chr1	181834461	181834661	-	1	NA	NA	NA	7840	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.020000	0.427861	
mm_28548.1	chr3	93018959	93019159	-	1	NA	NA	NA	1	NM_025420	66203	Mm.292457	NM_025420	ENSMUSG00000027912	Lce1m	1110059L13Rik|AI131654|Lce5a|Sprrl10	late cornified envelope 1M	protein-coding	0.010000	0.492537	-34(CTGTATAAAAGG,-,0.00)
mm_66190.1	chr7	34207842	34208042	-	1	NA	NA	NA	-11295	NM_026549	68079	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.025000	0.502488	
mm_159508.1	chr4	49844985	49845185	-	1	NA	NA	NA	684	NM_001033351	242443	Mm.440095	NM_001033351	ENSMUSG00000039579	Grin3a	6430537F04|A830097C19Rik|NMDAR-L|NR3A|mKIAA1973	glutamate receptor ionotropic, NMDA3A	protein-coding	0.060000	0.671642	
mm_85261.1	chr9	99411747	99411947	-	1	NA	NA	NA	24865	NM_008624	17532	Mm.2045	NM_008624	ENSMUSG00000032470	Mras	2900078C09Rik|AI326250	muscle and microspikes RAS	protein-coding	0.020000	0.462687	
mm_81153.1	chr9	107288858	107289058	+	1	NA	NA	NA	438	NM_001316691	102626	Mm.222612	NM_178907	ENSMUSG00000032577	Mapkapk3	3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3	mitogen-activated protein kinase-activated protein kinase 3	protein-coding	0.030000	0.487562	
mm_4622.1	chr1	179174364	179174564	+	1	NA	NA	NA	343539	NM_027188	69726	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.005000	0.457711	
mm_77349.1	chr8	119574879	119575079	-	1	NA	NA	NA	221	NM_175185	72552	Mm.36756	NM_175185	ENSMUSG00000034189	Hsdl1	2700067E09Rik	hydroxysteroid dehydrogenase like 1	protein-coding	0.125000	0.771144	
mm_55457.1	chr6	67376059	67376259	-	1	NA	NA	NA	-22	NM_008354	16162	Mm.188337	NM_008354	ENSMUSG00000018341	Il12rb2	A930027I18Rik|IL-12RB2|Ifnm	interleukin 12 receptor, beta 2	protein-coding	0.065000	0.636816	
mm_162778.1	chr10	69551200	69551400	+	1	NA	NA	NA	17592	NM_146005	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.000000	0.393035	
mm_128952.1	chr15	74763626	74763826	-	1	NA	NA	NA	-159	NM_010742	17068	Mm.878	NM_010742	ENSMUSG00000034634	Ly6d	Ly-61|Ly61|Thb	lymphocyte antigen 6 complex, locus D	protein-coding	0.010000	0.626866	
mm_129867.1	chr15	83367206	83367406	-	1	NA	NA	NA	-9	NR_027980	69291	Mm.66794	NM_001033147		1700001L05Rik	-	RIKEN cDNA 1700001L05 gene	ncRNA	0.100000	0.711443	
mm_120034.1	chr14	56017868	56018068	+	1	NA	NA	NA	4	NM_008570	17224	Mm.201549	NM_008570	ENSMUSG00000022227	Mcpt1	AV080368|Mcp-1	mast cell protease 1	protein-coding	0.010000	0.527363	-35(ATCTATAAAAGC,-,0.00)
mm_155325.1	chrX	64173452	64173652	+	1	NA	NA	NA	4	NM_027512	70696	Mm.54544	NM_027512	ENSMUSG00000031179	3830417A13Rik	-	RIKEN cDNA 3830417A13 gene	protein-coding	0.035000	0.522388	
mm_157800.1	chrX	73921836	73922036	-	1	NA	NA	NA	8	NM_001310538	56292	Mm.246654	NM_019870	ENSMUSG00000031388	Naa10	2310039H09Rik|Ard1|Ard1a|Te2	N(alpha)-acetyltransferase 10, NatA catalytic subunit	protein-coding	0.070000	0.592040	
mm_61287.1	chr7	67645345	67645545	+	1	NA	NA	NA	-209	NR_028143	67867	Mm.31247	NM_027413	ENSMUSG00000030556	Lrrc28	1300004K21Rik|2210012C09Rik|2310058O11Rik	leucine rich repeat containing 28	protein-coding	0.065000	0.557214	
mm_135691.1	chr16	52434401	52434601	-	1	NA	NA	NA	18580	NM_009655	11658	Mm.288282	NM_009655	ENSMUSG00000022636	Alcam	AI853494|BEN|CD166|DM-GRASP|MuSC|SC1	activated leukocyte cell adhesion molecule	protein-coding	0.005000	0.497512	
mm_92337.1	chr10	75822400	75822600	-	1	NA	NA	NA	43	NM_029472	75886	Mm.268996	NM_029472	ENSMUSG00000009093	Gstt4	4930583C14Rik|AI507011	glutathione S-transferase, theta 4	protein-coding	0.005000	0.557214	
mm_40726.1	chr5	65975884	65976084	+	1	NA	NA	NA	8860	NM_001081104	231252	Mm.140015	NM_001081104	ENSMUSG00000029205	Chrna9	2410015I05Rik|Acra9|EG666827|Gm8311	cholinergic receptor, nicotinic, alpha polypeptide 9	protein-coding	0.035000	0.572139	88(GCTTATAGAGCA,+,0.00)
mm_81278.1	chr9	108296597	108296797	+	1	NA	NA	NA	-225	NM_001013814	434437	Mm.390225	NM_001013814	ENSMUSG00000032607	Amt	EG434437	aminomethyltransferase	protein-coding	0.010000	0.477612	
mm_3098.1	chr1	134428035	134428235	+	1	NA	NA	NA	12471	NM_001306069	72674	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.030000	0.512438	
mm_146230.1	chr18	77117520	77117720	+	1	NA	NA	NA	51940	NM_001164168	17344	Mm.6370	NM_008602	ENSMUSG00000025423	Pias2	6330408K17Rik|AI462206|ARIP3|AU018068|Dib|Miz1|PIASxalpha|PIASxb|PIASxbeta|SIZ2	protein inhibitor of activated STAT 2	protein-coding	0.010000	0.457711	
mm_79102.1	chr9	46243280	46243480	+	1	NA	NA	NA	2536	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.010000	0.562189	
mm_96629.1	chr11	69156972	69157172	+	1	NA	NA	NA	0	NM_009659	11686	Mm.340329	NM_009659	ENSMUSG00000032807	Alox12b	12R-LOX|Aloxe2|e-LOX2	arachidonate 12-lipoxygenase, 12R type	protein-coding	0.060000	0.646766	
mm_23741.1	chr3	69316763	69316963	+	1	NA	NA	NA	-55	NM_178726	242083	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	0.130000	0.756219	
mm_9689.1	chr1	178336303	178336503	-	1	NA	NA	NA	1381	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.060000	0.552239	
mm_41160.1	chr5	87929835	87930035	+	1	NA	NA	NA	4302	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.005000	0.467662	
mm_124271.1	chr14	103007758	103007958	-	1	NA	NA	NA	-25221	NM_177715	239217	Mm.246466	NM_177715	ENSMUSG00000098557	Kctd12	AU046135|AW538430|Pfet1|Pfetin	potassium channel tetramerisation domain containing 12	protein-coding	0.020000	0.487562	
mm_154996.1	chrX	38600559	38600759	+	1	NA	NA	NA	1	NM_026902	68995	Mm.262453	NM_026902	ENSMUSG00000000355	Mcts1	1500019M23Rik|MCT-1	malignant T cell amplified sequence 1	protein-coding	0.080000	0.552239	
mm_155260.1	chrX	57766768	57766968	+	1	NA	NA	NA	-263111	NM_001033360	245424	Mm.336070	NM_001033360	ENSMUSG00000036357	Gpr101	GPCR6|Gm365	G protein-coupled receptor 101	protein-coding	0.025000	0.368159	
mm_24744.1	chr3	95315157	95315357	+	1	NA	NA	NA	67	NM_029789	76893	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.110000	0.731343	
mm_53003.1	chr6	123270298	123270498	+	1	NA	NA	NA	8291	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.015000	0.452736	
mm_117857.1	chr13	98815139	98815339	-	1	NA	NA	NA	210	NM_172591	218503	Mm.23928	NM_172591	ENSMUSG00000041685	Fcho2	5832424M12Rik|AA387320	FCH domain only 2	protein-coding	0.175000	0.781095	
mm_92900.1	chr10	83326636	83326836	-	1	NA	NA	NA	11081	NM_177388	338365	Mm.67073	NM_177388	ENSMUSG00000034591	Slc41a2	A230035L05Rik|SLC41A1-L1	solute carrier family 41, member 2	protein-coding	0.030000	0.457711	
mm_91542.1	chr10	39618486	39618686	-	1	NA	NA	NA	5652	NM_134000	103213	Mm.436686	NM_134000	ENSMUSG00000019842	Traf3ip2	AI429613|Act1|CIKS	TRAF3 interacting protein 2	protein-coding	0.015000	0.492537	
mm_157120.1	chrX	9444513	9444713	-	1	NA	NA	NA	24711	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.010000	0.472637	
mm_104432.1	chr11	94951460	94951660	-	1	NA	NA	NA	15336	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.030000	0.567164	
mm_13720.1	chr2	117249670	117249870	+	1	NA	NA	NA	31	NM_026620	68215	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	0.070000	0.597015	
mm_154.1	chr1	12692262	12692462	+	1	NA	NA	NA	-68	NM_001198565	240725	Mm.45563	NM_172294	ENSMUSG00000016918	Sulf1	AI467640|AW121680|mKIAA1077	sulfatase 1	protein-coding	0.040000	0.572139	
mm_138749.1	chr17	37045715	37045915	+	1	NA	NA	NA	-151	NM_019439	54393	Mm.32191	NM_019439	ENSMUSG00000024462	Gabbr1	GABAB1|GABAbR1|bM573K1.1	gamma-aminobutyric acid (GABA) B receptor, 1	protein-coding	0.055000	0.636816	
mm_125549.1	chr15	58528231	58528431	+	1	NA	NA	NA	112863	NM_145959	210998	Mm.3224	NM_145959	ENSMUSG00000037119	Fam91a1	AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493	family with sequence similarity 91, member A1	protein-coding	0.040000	0.592040	
mm_144250.1	chr18	10815979	10816179	+	1	NA	NA	NA	-30527	NR_029781	723959		NR_029781	ENSMUSG00000106348	Mir1a-2	Mir1-2|Mirn1-2|mir-1a-2|mmu-mir-1-2|mmu-mir-1a-2	microRNA 1a-2	ncRNA	0.005000	0.353234	
mm_66008.1	chr7	30563146	30563346	-	1	NA	NA	NA	-62	NM_025498	66340	Mm.86557	NM_025498	ENSMUSG00000036835	Psenen	1700023M09Rik|Pen-2	presenilin enhancer gamma secretase subunit	protein-coding	0.095000	0.616915	
mm_77661.1	chr8	124663276	124663476	-	1	NA	NA	NA	-7	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding	0.085000	0.726368	
mm_86798.1	chr10	20267189	20267389	+	1	NA	NA	NA	30399	NR_105840	102466647		NR_105840	ENSMUSG00000098887	Mir6413	Gm27432|mmu-mir-6413	microRNA 6413	ncRNA	0.025000	0.567164	
mm_80625.1	chr9	88956917	88957117	+	1	NA	NA	NA	97	NM_009742	12044	Mm.425593	NM_009742	ENSMUSG00000102037	Bcl2a1a	A1|BB218357|Bcl2a1|Bfl-1|Hbpa1	B cell leukemia/lymphoma 2 related protein A1a	protein-coding	0.000000	0.512438	
mm_66663.1	chr7	45717247	45717447	-	1	NA	NA	NA	655	NM_203280	56632	Mm.24222	NM_020011	ENSMUSG00000057342	Sphk2	C76851	sphingosine kinase 2	protein-coding	0.030000	0.497512	
mm_30985.1	chr4	34893705	34893905	+	1	NA	NA	NA	26	NM_009889	12640	Mm.1361	NM_009889	ENSMUSG00000028298	Cga	CG-alpha|FSHA|GPHA1|GPHalpha|HCG|LHA|Tsha|aGSU|alpha-GSU|alphaGSU|alphaSU	glycoprotein hormones, alpha subunit	protein-coding	0.005000	0.417910	-59(TGGTATAAAAGA,-,0.00)
mm_131831.1	chr16	22957405	22957605	+	1	NA	NA	NA	6433	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.005000	0.452736	-79(GCTTTTATGCTC,+,0.00)
mm_130145.1	chr15	90943529	90943729	-	1	NA	NA	NA	-45153	NR_033583	20738	Mm.431547	NR_033583		Spn-ps	Cd43-ps	sialophorin, pseudogene	pseudo	0.005000	0.552239	
mm_46690.1	chr5	110083081	110083281	-	1	NA	NA	NA	-16788	NM_207279	403178	Mm.297057	NM_207279	ENSMUSG00000064247	Plcxd1	A330045H12Rik|Gm576	phosphatidylinositol-specific phospholipase C, X domain containing 1	protein-coding	0.015000	0.512438	
mm_55635.1	chr6	72333181	72333381	-	1	NA	NA	NA	11894	NM_138592	28035	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	0.015000	0.562189	
mm_104715.1	chr11	98053185	98053385	-	1	NA	NA	NA	177	NM_146028	217154	Mm.181008	NM_146028	ENSMUSG00000017400	Stac2	24b2|24b2/STAC2|AW240854	SH3 and cysteine rich domain 2	protein-coding	0.095000	0.701493	
mm_170296.1	chr18	31447077	31447277	-	1	NA	NA	NA	238	NM_009308	20983	Mm.233846	NM_009308	ENSMUSG00000024261	Syt4	SytIV	synaptotagmin IV	protein-coding	0.030000	0.582090	
mm_5304.1	chr1	21962263	21962463	-	1	NA	NA	NA	287	NM_001310477	226922	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	0.040000	0.606965	
mm_142995.1	chr17	56301082	56301282	-	1	NA	NA	NA	-896	NM_029799	76920	Mm.329132	NM_029799	ENSMUSG00000073380	Arrdc5	1700013E09Rik	arrestin domain containing 5	protein-coding	0.015000	0.457711	
mm_90654.1	chr10	128790836	128791036	+	1	NA	NA	NA	-19	NM_021412	58223	Mm.131266	NM_021412	ENSMUSG00000025355	Mmp19	-	matrix metallopeptidase 19	protein-coding	0.000000	0.537313	-10(GCTTATAAAGAG,+,0.00)
mm_124378.1	chr14	106486422	106486622	-	1	NA	NA	NA	-2	NR_045938	73631	Mm.48862	NR_045938	ENSMUSG00000099794	1700128A07Rik	-	RIKEN cDNA 1700128A07 gene	ncRNA	0.010000	0.502488	
mm_31425.1	chr4	48083581	48083781	+	1	NA	NA	NA	32435	NM_001307989	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.000000	0.358209	
mm_115851.1	chr13	21288646	21288846	-	1	NA	NA	NA	3940	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.010000	0.452736	
mm_132092.1	chr16	31234261	31234461	+	1	NA	NA	NA	-33123	NM_030138	78618	Mm.274646	NM_030138	ENSMUSG00000049076	Acap2	4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041	ArfGAP with coiled-coil, ankyrin repeat and PH domains 2	protein-coding	0.025000	0.437811	
mm_92348.1	chr10	75860172	75860372	-	1	NA	NA	NA	-22	NM_010798	17319	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	GIF|Glif	macrophage migration inhibitory factor	protein-coding	0.090000	0.661692	
mm_157237.1	chrX	17319283	17319483	-	1	NA	NA	NA	-15	NM_028916	74405	Mm.248531	NM_028916	ENSMUSG00000025038	Efhc2	4933407D04Rik|mRib72-2	EF-hand domain (C-terminal) containing 2	protein-coding	0.045000	0.597015	
mm_23742.1	chr3	69316805	69317005	+	1	NA	NA	NA	-13	NM_178726	242083	Mm.40577	NM_178726	ENSMUSG00000027784	Ppm1l	3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175	protein phosphatase 1 (formerly 2C)-like	protein-coding	0.120000	0.761194	
mm_109237.1	chr12	108893543	108893743	+	1	NA	NA	NA	-432	NM_011710	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.035000	0.502488	
mm_29830.1	chr3	129754852	129755052	-	1	NA	NA	NA	370	NM_010113	13645	Mm.252481	NM_010113	ENSMUSG00000028017	Egf	AI790464	epidermal growth factor	protein-coding	0.035000	0.557214	36(GTGTTTTTAAAG,-,0.00),38(GTTTTTAAAGAT,+,0.00)
mm_167875.1	chrX	37753837	37754037	+	1	NA	NA	NA	-671	NM_008818	18617	Mm.423066	NM_008818	ENSMUSG00000095180	Rhox5	AA409564|Pem	reproductive homeobox 5	protein-coding	0.015000	0.442786	
mm_85393.1	chr9	103288141	103288341	-	1	NA	NA	NA	56	NM_027918	71775	Mm.18802	NM_027918	ENSMUSG00000033688	1300017J02Rik	Ica|mICA	RIKEN cDNA 1300017J02 gene	protein-coding	0.020000	0.587065	
mm_75006.1	chr8	27240191	27240391	-	1	NA	NA	NA	-10703	NM_013462	11556	Mm.278475	NM_013462	ENSMUSG00000031489	Adrb3	Adrb-3	adrenergic receptor, beta 3	protein-coding	0.000000	0.497512	
mm_149563.1	chr19	12795783	12795983	+	1	NA	NA	NA	240	NR_024093	664779	Mm.290924	NM_001039718	ENSMUSG00000024695	Gm44505	Zfp91-Cntf|Zfp91Cntf	predicted readthrough transcript (NMD candidate), 44505	ncRNA	0.100000	0.691542	
mm_23757.1	chr3	70007552	70007752	+	1	NA	NA	NA	39	NM_001018031	229389	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1	protein-coding	0.010000	0.452736	
mm_169234.1	chr1	36957345	36957545	-	1	NA	NA	NA	-17918	NM_018872	56030	Mm.186943	NM_018872	ENSMUSG00000026116	Tmem131	2610524E03Rik|CC28|D1Bwg0491e|Neg|RW1|YR-23|mKIAA0257	transmembrane protein 131	protein-coding	0.055000	0.567164	
mm_1833.1	chr1	82785838	82786038	+	1	NA	NA	NA	-17482	NM_025453	66261	Mm.46325	NM_025453	ENSMUSG00000026149	Tm4sf20	1810018L02Rik	transmembrane 4 L six family member 20	protein-coding	0.020000	0.472637	
mm_72449.1	chr8	83165567	83165767	+	1	NA	NA	NA	315	NM_027758	71310	Mm.24031	NM_027758	ENSMUSG00000031709	Tbc1d9	4933431N12Rik|AI847101|AW490653|C76116	TBC1 domain family, member 9	protein-coding	0.140000	0.711443	
mm_29595.1	chr3	119749884	119750084	-	1	NA	NA	NA	33404	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.010000	0.338308	
mm_162149.1	chrX	75163628	75163828	-	1	NA	NA	NA	23	NM_001033786	434800	Mm.460747	NM_001033786	ENSMUSG00000073094	Smim9	4930428E23Rik	small integral membrane protein 9	protein-coding	0.005000	0.407960	
mm_31362.1	chr4	47259609	47259809	+	1	NA	NA	NA	51697	NM_009928	12819	Mm.233547	NM_009928	ENSMUSG00000028339	Col15a1	-	collagen, type XV, alpha 1	protein-coding	0.005000	0.547264	
mm_64081.1	chr7	140942814	140943014	+	1	NA	NA	NA	1333	NM_145387	212974	Mm.260139	NM_145387	ENSMUSG00000062031	Pgghg	5730511L01Rik|Athl1|BC023151	protein glucosylgalactosylhydroxylysine glucosidase	protein-coding	0.000000	0.587065	
mm_135309.1	chr16	38712863	38713063	-	1	NA	NA	NA	72	NM_020260	12549	Mm.370848	NM_020260	ENSMUSG00000022799	Arhgap31	5830477L08Rik|AU041750|Cdgap|D330026I07Rik	Rho GTPase activating protein 31	protein-coding	0.100000	0.686567	
mm_143223.1	chr17	63304039	63304239	-	1	NA	NA	NA	8834	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.015000	0.517413	8(TCTTTAAGAGAG,+,0.00)
mm_25574.1	chr3	116845054	116845254	+	1	NA	NA	NA	-14413	NM_001113478	20321	Mm.66293	NM_009146	ENSMUSG00000033386	Frrs1	AI131732|Sdfr2	ferric-chelate reductase 1	protein-coding	0.020000	0.457711	
mm_5647.1	chr1	40516379	40516579	-	1	NA	NA	NA	1117	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.025000	0.457711	
mm_61335.1	chr7	68276021	68276221	+	1	NA	NA	NA	473	NR_040340	100504026	Mm.426764	NR_040340	ENSMUSG00000086628	Gm16157	OTTMUSG00000031023	predicted gene 16157	ncRNA	0.075000	0.621891	
mm_104871.1	chr11	99416878	99417078	-	1	NA	NA	NA	5281	NM_010661	268482	Mm.436651	NM_010661	ENSMUSG00000020912	Krt12	AI835216|K12|Krt-12|Krt1-12	keratin 12	protein-coding	0.045000	0.477612	
mm_87422.1	chr10	50729825	50730025	+	1	NA	NA	NA	137256	NM_198007	77987	Mm.222497	NM_198007	ENSMUSG00000038774	Ascc3	ASC1p200|B630009I04Rik|BC023451|D430001L07Rik|D630041L21|Helic1|RNAH	activating signal cointegrator 1 complex subunit 3	protein-coding	0.005000	0.298507	-23(CCCTTTTTAGGC,-,0.00)
mm_146605.1	chr18	9619329	9619529	-	1	NA	NA	NA	40	NM_007593	26369	Mm.195831	NM_007593	ENSMUSG00000050996	Cetn1	caltractin	centrin 1	protein-coding	0.050000	0.577114	
mm_150110.1	chr19	29583964	29584164	+	1	NA	NA	NA	61782	NM_001081319	226089	Mm.353838	NM_177641	ENSMUSG00000038658	Ric1	C030046E11Rik|C130057E09Rik|Kiaa1432	RAB6A GEF complex partner 1	protein-coding	0.000000	0.373134	
mm_15115.1	chr2	153670761	153670961	+	1	NA	NA	NA	21412	NM_001271747	13436	Mm.89772	NM_010068	ENSMUSG00000027478	Dnmt3b	MmuIIIB	DNA methyltransferase 3B	protein-coding	0.035000	0.388060	
mm_143341.1	chr17	66519597	66519797	-	1	NA	NA	NA	-27	NM_024448	19328	Mm.248313	NM_024448	ENSMUSG00000023460	Rab12	2900054P15Rik|AW555448|C77700	RAB12, member RAS oncogene family	protein-coding	0.160000	0.791045	
mm_170746.1	chr2	155530951	155531151	-	1	NA	NA	NA	13008	NM_019811	60525	Mm.255026	NM_019811	ENSMUSG00000027605	Acss2	1110017C11Rik|ACAS|Acas1|Acas2|AceCS1|Acs1	acyl-CoA synthetase short-chain family member 2	protein-coding	0.010000	0.363184	
mm_98661.1	chr11	96271825	96272025	+	1	NA	NA	NA	595	NM_008270	15417	Mm.258271	NM_008270	ENSMUSG00000020875	Hoxb9	Hox-2.5	homeobox B9	protein-coding	0.110000	0.686567	
mm_39577.1	chr5	23434408	23434608	+	1	NA	NA	NA	79	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.145000	0.736318	
mm_12654.1	chr2	75138753	75138953	+	1	NA	NA	NA	305326	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA	0.025000	0.427861	-6(CTTTTTATACTC,+,0.00),13(GAGCCTTTAAGG,-,0.00),15(GCCTTTAAGGCA,+,0.00),16(CCTTTAAGGCAG,+,0.00)
mm_68255.1	chr7	105581435	105581635	-	1	NA	NA	NA	-44	NM_001253886	11785	Mm.38469	NM_009685	ENSMUSG00000037032	Apbb1	Fe65|Rir	amyloid beta (A4) precursor protein-binding, family B, member 1	protein-coding	0.075000	0.691542	
mm_120788.1	chr14	74732319	74732519	+	1	NA	NA	NA	122	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.075000	0.621891	
mm_87370.1	chr10	44268254	44268454	+	1	NA	NA	NA	15	NM_053069	11793	Mm.22264	NM_053069	ENSMUSG00000038160	Atg5	2010107M05Rik|3110067M24Rik|AW319544|Apg5l|Atg5l|C88337|Paddy	autophagy related 5	protein-coding	0.115000	0.691542	
mm_117929.1	chr13	99434207	99434407	-	1	NA	NA	NA	-21481	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.015000	0.462687	
mm_160174.1	chr7	45394665	45394865	-	1	NA	NA	NA	977	NM_009224	20637	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	0.015000	0.472637	
mm_18624.1	chr2	68565296	68565496	-	1	NA	NA	NA	-17017	NM_177651	227998	Mm.67562	NM_177651	ENSMUSG00000053896	4933409G03Rik	-	RIKEN cDNA 4933409G03 gene	protein-coding	0.020000	0.502488	
mm_27356.1	chr3	50417793	50417993	-	1	NA	NA	NA	25720	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.283582	
mm_89678.1	chr10	97517459	97517659	+	1	NA	NA	NA	35228	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.040000	0.492537	
mm_10410.1	chr2	13578941	13579141	+	1	NA	NA	NA	4730	NM_011701	22352	Mm.268000	NM_011701	ENSMUSG00000026728	Vim	-	vimentin	protein-coding	0.010000	0.427861	
mm_140482.1	chr17	3114695	3114895	-	1	NA	NA	NA	-177	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.125000	0.701493	
mm_45455.1	chr5	67766616	67766816	-	1	NA	NA	NA	80715	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.000000	0.288557	74(GCTTTAAAATCC,+,0.00)
mm_167701.1	chr9	90242899	90243099	-	1	NA	NA	NA	27770	NM_194334	67016	Mm.335347	NM_194334	ENSMUSG00000037410	Tbc1d2b	1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055	TBC1 domain family, member 2B	protein-coding	0.025000	0.542289	
mm_51939.1	chr6	91701556	91701756	+	1	NA	NA	NA	17589	NM_009320	21366	Mm.395650	NM_009320	ENSMUSG00000030096	Slc6a6	AA589629|C80501|Taut	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	protein-coding	0.020000	0.547264	
mm_55522.1	chr6	70429875	70430075	-	1	NA	NA	NA	362200	NM_009075	19895	Mm.17905	NM_009075	ENSMUSG00000053604	Rpia	RPI	ribose 5-phosphate isomerase A	protein-coding	0.015000	0.532338	
mm_137261.1	chr17	24639883	24640083	+	1	NA	NA	NA	4974	NM_023449	65962	Mm.21587	NM_023055	ENSMUSG00000002504	Slc9a3r2	0610011L07Rik|1200011K07Rik|2010007A20Rik|E3karp|NHERF-2|Nherf2|Octs2|Sip-1|Sip1|Sryip1|Tka-1	solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 2	protein-coding	0.025000	0.542289	
mm_24058.1	chr3	87914988	87915188	+	1	NA	NA	NA	-4456	NM_026591	67707	Mm.393802	NM_026591	ENSMUSG00000019710	Mrpl24	2010005E08Rik|2810470K06Rik|6720473G22Rik|AA407670	mitochondrial ribosomal protein L24	protein-coding	0.000000	0.542289	
mm_108788.1	chr12	90738759	90738959	+	1	NA	NA	NA	178	NM_010050	13371	Mm.21389	NM_010050	ENSMUSG00000007682	Dio2	5DII|AI324267|DIOII	deiodinase, iodothyronine, type II	protein-coding	0.015000	0.447761	
mm_52964.1	chr6	123124422	123124622	+	1	NA	NA	NA	1206	NM_001170333	26888	Mm.47384	NM_011999	ENSMUSG00000030148	Clec4a2	Clec4a|Clecsf6|DCIR|Dcir1	C-type lectin domain family 4, member a2	protein-coding	0.000000	0.378109	
mm_91619.1	chr10	41685876	41686076	-	1	NA	NA	NA	-79381	NM_001303469	75973	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0.000000	0.338308	
mm_78677.1	chr9	40782316	40782516	+	1	NA	NA	NA	-18857	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.080000	0.671642	
mm_77356.1	chr8	119635373	119635573	-	1	NA	NA	NA	207	NM_025734	66733	Mm.358699	NM_025734	ENSMUSG00000045246	Kcng4	4921535I01Rik|AW049024|KV6.3|KV6.4	potassium voltage-gated channel, subfamily G, member 4	protein-coding	0.020000	0.537313	
mm_38966.1	chr4	150901995	150902195	-	1	NA	NA	NA	7826	NM_020569	57320	Mm.277349	NM_020569	ENSMUSG00000028964	Park7	DJ-1|Dj1	Parkinson disease (autosomal recessive, early onset) 7	protein-coding	0.025000	0.492537	
mm_95367.1	chr11	49086575	49086775	+	1	NA	NA	NA	-342	NM_001271676	15953	Mm.24769	NM_008330	ENSMUSG00000078920	Ifi47	47kDa|IRG-47|Ifggc1|Igrd|Iigp4|Iipg4|Irgd	interferon gamma inducible protein 47	protein-coding	0.015000	0.532338	
mm_16371.1	chr2	178023183	178023383	+	1	NA	NA	NA	-1	NM_001177400	626848	Mm.422604	NM_001177399	ENSMUSG00000074519	Zfp971	Etohi1	zinc finger protein 971	protein-coding	0.015000	0.487562	
mm_55811.1	chr6	83033106	83033306	-	1	NA	NA	NA	265	NM_010070	13448	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.060000	0.582090	-34(TCCCTTAAAAGT,-,0.00),-33(CCCTTAAAAGTC,+,0.00)
mm_21807.1	chr2	165034695	165034895	-	1	NA	NA	NA	-16	NM_144892	228869	Mm.233080	NM_144892	ENSMUSG00000039804	Ncoa5	CIA	nuclear receptor coactivator 5	protein-coding	0.135000	0.756219	
mm_51312.1	chr6	72314197	72314397	+	1	NA	NA	NA	9687	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.015000	0.502488	
mm_43257.1	chr5	130222297	130222497	+	1	NA	NA	NA	62	NM_027854	71667	Mm.258508	NM_027854	ENSMUSG00000053094	Tmem248	0610007L01Rik|A930023A16Rik|AW557951|G430067H08Rik	transmembrane protein 248	protein-coding	0.155000	0.741294	
mm_16182.1	chr2	172938694	172938894	+	1	NA	NA	NA	1527	NM_007557	12162	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	0.045000	0.537313	
mm_4873.1	chr1	187810295	187810495	+	1	NA	NA	NA	-187432	NM_011935	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.015000	0.358209	
mm_15756.1	chr2	164275964	164276164	+	1	NA	NA	NA	2243	NM_009300	20941	Mm.1286	NM_009300	ENSMUSG00000016998	Svs4	SVS-IV|Svp-2|Svp-4|Svp2|Svp4	seminal vesicle secretory protein 4	protein-coding	0.015000	0.452736	
mm_68323.1	chr7	106503421	106503621	-	1	NA	NA	NA	-62448	NR_003967	209380	Mm.461779	NM_001001318		Gm4759	EG209380	GTPase, very large interferon inducible 1 pseudogene	pseudo	0.005000	0.358209	
mm_161288.1	chr14	26182189	26182389	-	1	NA	NA	NA	-16	NM_207229	211623	Mm.439926	NM_207229	ENSMUSG00000095304	Plac9a	Plac9	placenta specific 9a	protein-coding	0.115000	0.691542	
mm_166978.1	chr7	45175098	45175298	+	1	NA	NA	NA	1895	NR_106022	102465638		NR_106022	ENSMUSG00000106470	Mir7055	mmu-mir-7055	microRNA 7055	ncRNA	0.030000	0.582090	
mm_94204.1	chr11	3104166	3104366	+	1	NA	NA	NA	-19755	NR_003517	236604	Mm.247625	NM_001004146		Pisd-ps1	-	phosphatidylserine decarboxylase, pseudogene 1	pseudo	0.025000	0.358209	
mm_139955.1	chr17	71310934	71311134	+	1	NA	NA	NA	-69	NM_145158	246707	Mm.23462	NM_145158	ENSMUSG00000024053	Emilin2	FOAP-10	elastin microfibril interfacer 2	protein-coding	0.080000	0.626866	
mm_12776.1	chr2	79328569	79328769	+	1	NA	NA	NA	73243	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.015000	0.333333	
mm_168579.1	chr1	171710979	171711179	+	1	NA	NA	NA	29024	NM_007649	12506	Mm.1738	NM_007649	ENSMUSG00000015355	Cd48	AI449234|AW610730|BCM1|BLAST|BLAST-1|BLAST1|Bcm-1|MEM-102|SLAMF2|Sgp-60	CD48 antigen	protein-coding	0.020000	0.547264	
mm_101981.1	chr11	50421932	50422132	-	1	NA	NA	NA	9079	NM_172557	216724	Mm.390400	NM_172557	ENSMUSG00000020375	Rufy1	3000002E04Rik|Rabip4|ZFYVE12	RUN and FYVE domain containing 1	protein-coding	0.040000	0.557214	
mm_140785.1	chr17	17910159	17910359	-	1	NA	NA	NA	22435	NM_008039	14289	Mm.378918	NM_008039	ENSMUSG00000052270	Fpr2	E330010I07Rik|Fpr-rs2	formyl peptide receptor 2	protein-coding	0.075000	0.631841	
mm_170368.1	chr1	85327246	85327446	-	1	NA	NA	NA	-56780	NM_001037909	620078	Mm.386456	NM_175219	ENSMUSG00000052477	C130026I21Rik	4930565N07Rik|OTTMUSG00000029174	RIKEN cDNA C130026I21 gene	protein-coding	0.010000	0.567164	
mm_24193.1	chr3	88607439	88607639	+	1	NA	NA	NA	-8668	NM_001198911	16800	Mm.239329	NM_008487	ENSMUSG00000028059	Arhgef2	AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651	rho/rac guanine nucleotide exchange factor (GEF) 2	protein-coding	0.040000	0.557214	
mm_156381.1	chrX	139672098	139672298	+	1	NA	NA	NA	-12798	NM_001081499	245638	Mm.275869	NM_001081499	ENSMUSG00000042473	Tbc1d8b	4921505D17Rik|9030605E16Rik	TBC1 domain family, member 8B	protein-coding	0.010000	0.323383	-18(TGCTTTAAAAGT,-,0.00),-17(GCTTTAAAAGTG,+,0.00)
mm_118951.1	chr14	27379393	27379593	+	1	NA	NA	NA	18104	NM_001289688	71704	Mm.248606	NM_027871	ENSMUSG00000021895	Arhgef3	1200004I24Rik|9830169H03Rik|C76747|Xpln	Rho guanine nucleotide exchange factor (GEF) 3	protein-coding	0.015000	0.497512	-36(CTCCTTAAAAGC,-,0.00)
mm_74748.1	chr8	19026450	19026650	-	1	NA	NA	NA	-21	NM_183036	360212	Mm.271558	NM_183036	ENSMUSG00000053790	Defb38	BD-38	defensin beta 38	protein-coding	0.000000	0.447761	
mm_93254.1	chr10	95514656	95514856	-	1	NA	NA	NA	-406	NM_080560	93765	Mm.371667	NM_080560	ENSMUSG00000074781	Ube2n	1500026J17Rik|AL022654|BB101821|UBC13	ubiquitin-conjugating enzyme E2N	protein-coding	0.140000	0.686567	
mm_143718.1	chr17	81064978	81065178	-	1	NA	NA	NA	7	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.125000	0.741294	
mm_165087.1	chr19	48063465	48063665	+	1	NA	NA	NA	125853	NM_001163267	381229	Mm.300553	NM_001163267	ENSMUSG00000046585	Cfap58	Ccdc147|Gm969	cilia and flagella associated protein 58	protein-coding	0.005000	0.482587	
mm_157799.1	chrX	73921820	73922020	-	1	NA	NA	NA	24	NM_001310538	56292	Mm.246654	NM_019870	ENSMUSG00000031388	Naa10	2310039H09Rik|Ard1|Ard1a|Te2	N(alpha)-acetyltransferase 10, NatA catalytic subunit	protein-coding	0.080000	0.616915	
mm_87170.1	chr10	37238945	37239145	+	1	NA	NA	NA	-100119	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.015000	0.398010	
mm_13204.1	chr2	93461935	93462135	+	1	NA	NA	NA	-184	NM_001271461	12521	Mm.4261	NM_007656	ENSMUSG00000027215	Cd82	AA682076|AL023070|C33|IA4|Kai1|Tspan27	CD82 antigen	protein-coding	0.045000	0.547264	
mm_110639.1	chr12	57546800	57547000	-	1	NA	NA	NA	-779	NM_008259	15375	Mm.4578	NM_008259	ENSMUSG00000035451	Foxa1	Hnf-3a|Hnf3a|Tcf-3a|Tcf3a	forkhead box A1	protein-coding	0.035000	0.517413	
mm_169507.1	chr1	4802745	4802945	+	1	NA	NA	NA	-5048	NM_008866	18777	Mm.299955	NM_008866	ENSMUSG00000025903	Lypla1	Pla1a	lysophospholipase 1	protein-coding	0.020000	0.477612	-14(CCTTTTATAAGC,+,0.00),-14(CCTTTTATAAGC,-,0.00)
mm_118422.1	chr14	7858533	7858733	+	1	NA	NA	NA	40676	NM_134080	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.005000	0.542289	
mm_111106.1	chr12	80955944	80956144	-	1	NA	NA	NA	10545	NM_001347415	20384	Mm.43331	NM_009159	ENSMUSG00000021134	Srsf5	Sfrs5	serine/arginine-rich splicing factor 5	protein-coding	0.015000	0.452736	
mm_142578.1	chr17	46680802	46681002	-	1	NA	NA	NA	28	NM_001163729	71765	Mm.254784	NM_027910	ENSMUSG00000063576	Klhdc3	1300011D16Rik|Peas	kelch domain containing 3	protein-coding	0.095000	0.631841	
mm_117024.1	chr13	58192043	58192243	-	1	NA	NA	NA	23510	NM_152234	56085	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	0.035000	0.502488	
mm_88909.1	chr10	81179541	81179741	+	1	NA	NA	NA	680	NR_028549	100217454		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.040000	0.582090	
mm_9197.1	chr1	171226074	171226274	-	1	NA	NA	NA	1120	NM_013474	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.020000	0.522388	
mm_121355.1	chr14	116925681	116925881	+	1	NA	NA	NA	484	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.080000	0.671642	-33(GCTTATAAAAGT,-,0.00)
mm_105868.1	chr11	114237046	114237246	-	1	NA	NA	NA	38888	NR_045930	73536	Mm.54275	NR_045930	ENSMUSG00000078600	1700092K14Rik	-	RIKEN cDNA 1700092K14 gene	ncRNA	0.000000	0.467662	
mm_58144.1	chr6	142160991	142161191	-	1	NA	NA	NA	25058	NM_023718	28254	Mm.38953	NM_023718	ENSMUSG00000079262	Slco1a6	4930422F19Rik|AI790453|Oatp-5|Oatp5|Slc21a13	solute carrier organic anion transporter family, member 1a6	protein-coding	0.000000	0.378109	-33(TCTTTTAAACAG,+,0.00)
mm_113273.1	chr13	29653573	29653773	+	1	NA	NA	NA	202000	NR_131896	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0.015000	0.502488	
mm_66528.1	chr7	45135975	45136175	-	1	NA	NA	NA	357	NM_013520	14256	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	0.050000	0.671642	
mm_31639.1	chr4	59581427	59581627	+	1	NA	NA	NA	-36	NM_001301367	72479	Mm.272905	NM_024255	ENSMUSG00000028383	Hsdl2	2610207I16Rik	hydroxysteroid dehydrogenase like 2	protein-coding	0.080000	0.606965	
mm_49178.1	chr6	15105767	15105967	+	1	NA	NA	NA	-79639	NM_212435	114142	Mm.332919	NM_053242	ENSMUSG00000029563	Foxp2	2810043D05Rik|AI449000|CAG-16|D0Kist7	forkhead box P2	protein-coding	0.000000	0.238806	
mm_28531.1	chr3	92656826	92657026	-	1	NA	NA	NA	0	NM_026822	68720	Mm.291769	NM_026822	ENSMUSG00000027923	Lce1b	1110029C13Rik|Sprrl5	late cornified envelope 1B	protein-coding	0.000000	0.522388	
mm_109223.1	chr12	108793016	108793216	+	1	NA	NA	NA	-195	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.115000	0.736318	
mm_28216.1	chr3	88409981	88410181	-	1	NA	NA	NA	316	NM_001310605	67037	Mm.36715	NM_025928	ENSMUSG00000028066	Pmf1	2600009M07Rik|AL033286|AW060657	polyamine-modulated factor 1	protein-coding	0.100000	0.651741	
mm_167941.1	chrX	118427123	118427323	+	1	NA	NA	NA	-4	NM_001142750	100039551	Mm.272850	NM_001142750	ENSMUSG00000100194	Tgif2lx2	-	TGFB-induced factor homeobox 2-like, X-linked 2	protein-coding	0.015000	0.492537	
mm_52358.1	chr6	112488945	112489145	+	1	NA	NA	NA	763	NM_001081147	18430	Mm.333310	NM_001081147	ENSMUSG00000049112	Oxtr	OTR	oxytocin receptor	protein-coding	0.070000	0.587065	
mm_108626.1	chr12	85599298	85599498	+	1	NA	NA	NA	-18	NM_030887	81703	Mm.103560	NM_030887	ENSMUSG00000034271	Jdp2	Jundm2|Jundp2|TIF	Jun dimerization protein 2	protein-coding	0.145000	0.776119	
mm_117308.1	chr13	67451515	67451715	-	1	NA	NA	NA	9	NM_177712	238692	Mm.486478	NM_177712	ENSMUSG00000069206	Zfp874a	C330011K17Rik|Rslcan15|Zfp874	zinc finger protein 874a	protein-coding	0.030000	0.487562	
mm_159678.1	chr4	156223517	156223717	-	1	NA	NA	NA	4925	NM_001008233	231002	Mm.423124	NM_001008233	ENSMUSG00000078485	Plekhn1	BC025458	pleckstrin homology domain containing, family N member 1	protein-coding	0.020000	0.562189	
mm_157219.1	chrX	13072458	13072658	-	1	NA	NA	NA	1060	NM_009481	22284	Mm.242646	NM_009481	ENSMUSG00000031010	Usp9x	5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl	ubiquitin specific peptidase 9, X chromosome	protein-coding	0.125000	0.721393	
mm_130586.1	chr15	99628581	99628781	-	1	NA	NA	NA	22975	NM_001253808	26934	Mm.273804	NM_012025	ENSMUSG00000023015	Racgap1	AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478	Rac GTPase-activating protein 1	protein-coding	0.035000	0.532338	
mm_136664.1	chr17	6106373	6106573	+	1	NA	NA	NA	-357	NM_001103181	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.055000	0.562189	
mm_95317.1	chr11	46436880	46437080	+	1	NA	NA	NA	19	NM_025426	66213	Mm.24159	NM_025426	ENSMUSG00000020397	Med7	1110063B05Rik|Crsp33|Crsp9	mediator complex subunit 7	protein-coding	0.080000	0.611940	
mm_129149.1	chr15	76208991	76209191	-	1	NA	NA	NA	74	NM_201386	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.025000	0.636816	
mm_51098.1	chr6	67271168	67271368	+	1	NA	NA	NA	4289	NM_025814	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.020000	0.393035	
mm_139667.1	chr17	57411199	57411399	+	1	NA	NA	NA	52613	NM_010130	13733	Mm.2254	NM_010130	ENSMUSG00000004730	Adgre1	DD7A5-7|EGF-TM7|Emr1|F4/80|Gpf480|Ly71|TM7LN3	adhesion G protein-coupled receptor E1	protein-coding	0.000000	0.402985	
mm_23098.1	chr3	37231390	37231590	+	1	NA	NA	NA	1146	NM_001291041	60505	Mm.157689	NM_021782	ENSMUSG00000027718	Il21	IL-21	interleukin 21	protein-coding	0.010000	0.482587	
mm_35238.1	chr4	19877116	19877316	-	1	NA	NA	NA	45350	NM_175406	242341	Mm.19298	NM_175406	ENSMUSG00000028238	Atp6v0d2	1620401A02Rik|AI324824|V-ATPase	ATPase, H+ transporting, lysosomal V0 subunit D2	protein-coding	0.000000	0.323383	
mm_107852.1	chr12	69375475	69375675	+	1	NA	NA	NA	3425	NM_007481	11845	Mm.27308	NM_007481	ENSMUSG00000044147	Arf6	AI788669|AW496366	ADP-ribosylation factor 6	protein-coding	0.000000	0.308458	71(GACTTTAAGAGA,-,0.00)
mm_50503.1	chr6	49036434	49036634	+	1	NA	NA	NA	16	NM_053110	93695	Mm.302602	NM_053110	ENSMUSG00000029816	Gpnmb	DC-HIL|Dchil|ipd	glycoprotein (transmembrane) nmb	protein-coding	0.030000	0.482587	
mm_157998.1	chrX	94541908	94542108	-	1	NA	NA	NA	66	NM_019791	94275	Mm.27578	NM_019791	ENSMUSG00000025151	Maged1	2810433C11Rik|5430405L04Rik|DXBwg1492e|Dlixin|Dlxin-1|Dlxin1|MAGE-D1|NRAGE|mFLJ00163	melanoma antigen, family D, 1	protein-coding	0.105000	0.626866	
mm_52043.1	chr6	96399554	96399754	+	1	NA	NA	NA	-233449	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	-	nucleoporin 50 pseudogene	pseudo	0.000000	0.363184	
mm_68646.1	chr7	118488171	118488371	-	1	NA	NA	NA	3704	NM_001033380	319622	Mm.323386	NM_001033380	ENSMUSG00000095115	Itpripl2	C130081G24|E030018N11Rik	inositol 1,4,5-triphosphate receptor interacting protein-like 2	protein-coding	0.010000	0.393035	
mm_104061.1	chr11	86584435	86584635	-	1	NA	NA	NA	-377	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.005000	0.437811	
mm_156060.1	chrX	109160050	109160250	+	1	NA	NA	NA	-36606	NM_001037917	622976	Mm.482747	NM_001037917	ENSMUSG00000048621	Gm6377	EG622976	predicted gene 6377	protein-coding	0.005000	0.323383	63(GCTTTTATAGAA,+,0.00)
mm_111662.1	chr12	103335999	103336199	-	1	NA	NA	NA	19902	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.025000	0.597015	
mm_54825.1	chr6	42373164	42373364	-	1	NA	NA	NA	4	NM_023580	13835	Mm.133330	NM_023580	ENSMUSG00000029859	Epha1	5730453L17Rik|AL033318|Eph|Esk	Eph receptor A1	protein-coding	0.075000	0.726368	-93(CCCTTTAAGAAG,-,0.00),-92(CCTTTAAGAAGG,+,0.00)
mm_40107.1	chr5	34761657	34761857	+	1	NA	NA	NA	17	NM_010414	15194	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	0.120000	0.666667	
mm_111447.1	chr12	98259250	98259450	-	1	NA	NA	NA	109	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.110000	0.666667	
mm_107358.1	chr12	32831906	32832106	+	1	NA	NA	NA	7890	NR_045032	100504486	Mm.440246	NR_045032		Gdap10	Gdap-ps	ganglioside-induced differentiation-associated-protein 10	ncRNA	0.000000	0.313433	
mm_155489.1	chrX	73716666	73716866	+	1	NA	NA	NA	169	NM_007435	11666	Mm.365	NM_007435	ENSMUSG00000031378	Abcd1	ALDP|Ald|Aldgh	ATP-binding cassette, sub-family D (ALD), member 1	protein-coding	0.025000	0.626866	
mm_98362.1	chr11	93898523	93898723	+	1	NA	NA	NA	12404	NM_134012	103537	Mm.210334	NM_134012	ENSMUSG00000059474	Mbtd1	AA408199|AI194990|hemp	mbt domain containing 1	protein-coding	0.005000	0.348259	
mm_87642.1	chr10	58371519	58371719	+	1	NA	NA	NA	165	NM_201242	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.040000	0.542289	
mm_156642.1	chrX	157698899	157699099	+	1	NA	NA	NA	26	NR_103722	66106	Mm.140340	NM_025357	ENSMUSG00000041476	Smpx	1010001C09Rik|Csl	small muscle protein, X-linked	protein-coding	0.010000	0.467662	
mm_156231.1	chrX	135839073	135839273	+	1	NA	NA	NA	139	NM_001163017	245607	Mm.489763	NM_001163015	ENSMUSG00000072966	Gprasp2	5330440H13Rik|GASP-2|GASP2|Prpl5	G protein-coupled receptor associated sorting protein 2	protein-coding	0.055000	0.641791	
mm_20762.1	chr2	140955872	140956072	-	1	NA	NA	NA	-284496	NM_178382	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.010000	0.497512	
mm_154395.1	chrM	13278	13478	+	1	NA	NA	NA	NA	NA									0.005000	0.368159	
mm_92185.1	chr10	68095843	68096043	-	1	NA	NA	NA	116345	NM_001081346	170799	Mm.209844	NM_133244	ENSMUSG00000037846	Rtkn2	B130039D23Rik|Mbf|Plekhk1	rhotekin 2	protein-coding	0.015000	0.358209	-46(GCTTCTTAAAGC,-,0.00)
mm_36602.1	chr4	88917185	88917385	-	1	NA	NA	NA	-6623	NR_029747	723895		NR_029747	ENSMUSG00000065408	Mir31	Mirn31|miR-31|mmu-mir-31	microRNA 31	ncRNA	0.005000	0.378109	
mm_148642.1	chr19	5480196	5480396	+	1	NA	NA	NA	5561	NM_001164352	58859	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	0.015000	0.522388	
mm_86264.1	chr9	121704919	121705119	-	1	NA	NA	NA	10	NM_001164562	215474	Mm.31421	NM_178677	ENSMUSG00000061536	Sec22c	4932412K21|5930407I15Rik|C530046H07|Sec22l3	SEC22 homolog C, vesicle trafficking protein	protein-coding	0.105000	0.696517	
mm_43624.1	chr5	138171270	138171470	+	1	NA	NA	NA	492	NM_008568	17220	Mm.378965	NM_008568	ENSMUSG00000029730	Mcm7	AI747533|Mcmd7|mCDC47	minichromosome maintenance complex component 7	protein-coding	0.090000	0.626866	
mm_164286.1	chr15	103245490	103245690	+	1	NA	NA	NA	5136	NR_002883	434858	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.005000	0.472637	58(AACTATTAAGGG,-,0.00)
mm_65938.1	chr7	30394209	30394409	-	1	NA	NA	NA	-19479	NM_011662	22177	Mm.46301	NM_011662	ENSMUSG00000030579	Tyrobp	DAP12|KARAP|Ly83	TYRO protein tyrosine kinase binding protein	protein-coding	0.005000	0.457711	
mm_73293.1	chr8	104961693	104961893	+	1	NA	NA	NA	75	NM_197999	72361	Mm.26580	NM_197999	ENSMUSG00000031877	Ces2g	2210023G05Rik|Ces2l	carboxylesterase 2G	protein-coding	0.020000	0.547264	
mm_29014.1	chr3	101836062	101836262	-	1	NA	NA	NA	61	NM_172295	242125	Mm.32900	NM_172295	ENSMUSG00000044313	Mab21l3	-	mab-21-like 3 (C. elegans)	protein-coding	0.020000	0.517413	
mm_85168.1	chr9	96394886	96395086	-	1	NA	NA	NA	-30687	NM_007502	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.015000	0.517413	
mm_166679.1	chr6	98382839	98383039	+	1	NA	NA	NA	-40185	NM_001128092	330390	Mm.484161	NM_001128092	ENSMUSG00000090667	Gm765	-	predicted gene 765	protein-coding	0.010000	0.492537	
mm_150249.1	chr19	34100911	34101111	+	1	NA	NA	NA	68	NM_023903	78753	Mm.195937	NM_023903	ENSMUSG00000056078	Lipm	4632427C23Rik|AW227514|Lipl3	lipase, family member M	protein-coding	0.010000	0.393035	
mm_172425.1	chr7	28259086	28259286	-	1	NA	NA	NA	-8695	NM_198425	386655	Mm.258201	NM_198425	ENSMUSG00000046058	Eid2	Cri2|EID-2	EP300 interacting inhibitor of differentiation 2	protein-coding	0.000000	0.398010	
mm_61249.1	chr7	65803931	65804131	+	1	NA	NA	NA	-21	NR_045301	100503969	Mm.383527	NR_045301		1810008I18Rik	-	RIKEN cDNA 1810008I18 gene	ncRNA	0.005000	0.517413	
mm_47186.1	chr5	120753909	120754109	-	1	NA	NA	NA	-4161	NM_001347448	246728	Mm.260926	NM_145227	ENSMUSG00000032690	Oas2	Oasl11	2'-5' oligoadenylate synthetase 2	protein-coding	0.000000	0.348259	
mm_111502.1	chr12	99420410	99420610	-	1	NA	NA	NA	29564	NM_183186	71375	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.010000	0.452736	
mm_159335.1	chr3	41563646	41563846	+	1	NA	NA	NA	-5	NM_001130185	269424	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.080000	0.557214	
mm_82701.1	chr9	22468138	22468338	-	1	NA	NA	NA	118	NM_018739	55934	Mm.38235	NM_018739	ENSMUSG00000032239	Rp9	PAP-1|Rp9h	retinitis pigmentosa 9 (human)	protein-coding	0.140000	0.751244	
mm_111664.1	chr12	103336199	103336399	-	1	NA	NA	NA	19702	NM_023049	65256	Mm.27159	NM_023049	ENSMUSG00000021200	Asb2	1110008E15Rik	ankyrin repeat and SOCS box-containing 2	protein-coding	0.020000	0.492537	
mm_105747.1	chr11	109452776	109452976	-	1	NA	NA	NA	12798	NR_040680	100503496	Mm.265874	NR_040680		LOC100503496	-	uncharacterized LOC100503496	ncRNA	0.020000	0.467662	
mm_159134.1	chr2	76338343	76338543	-	1	NA	NA	NA	210	NM_001081033	241489	Mm.246613	NM_001081033	ENSMUSG00000075270	Pde11a	6330414F14Rik|A630086N24Rik|Gm350|PDE11A1	phosphodiesterase 11A	protein-coding	0.020000	0.587065	
mm_81661.1	chr9	111009025	111009225	+	1	NA	NA	NA	-10167	NM_008522	17002	Mm.282359	NM_008522	ENSMUSG00000032496	Ltf	Csp82|Lf|MMS10R|Ms10r	lactotransferrin	protein-coding	0.005000	0.467662	
mm_114757.1	chr13	85189314	85189514	+	1	NA	NA	NA	29	NM_023243	66671	Mm.18474	NM_023243	ENSMUSG00000021548	Ccnh	6330408H09Rik|AI661354|AV102684|AW538719	cyclin H	protein-coding	0.140000	0.706468	
mm_4295.1	chr1	171775268	171775468	+	1	NA	NA	NA	8236	NM_013730	27218	Mm.103648	NM_013730	ENSMUSG00000015316	Slamf1	4933415F16|AA177906|CD150|CDw150|ESTM51|IPO-3|Slam	signaling lymphocytic activation molecule family member 1	protein-coding	0.000000	0.368159	
mm_125857.1	chr15	75070709	75070909	+	1	NA	NA	NA	-21972	NM_001252056	17067	Mm.1583	NM_010741	ENSMUSG00000079018	Ly6c1	AA682074|AA959465|Ly-6C|Ly-6C1|Ly6c	lymphocyte antigen 6 complex, locus C1	protein-coding	0.000000	0.522388	
mm_17869.1	chr2	34939955	34940155	-	1	NA	NA	NA	21717	NM_009421	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.005000	0.462687	
mm_30654.1	chr4	8912913	8913113	+	1	NA	NA	NA	222607	NM_001277149	320790	Mm.138792	NM_001033395	ENSMUSG00000041235	Chd7	A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis	chromodomain helicase DNA binding protein 7	protein-coding	0.000000	0.417910	
mm_21725.1	chr2	164673976	164674176	-	1	NA	NA	NA	11	NM_001161806	629761	Mm.389336	NM_001161806	ENSMUSG00000078940	Wfdc11	-	WAP four-disulfide core domain 11	protein-coding	0.015000	0.507463	
mm_146880.1	chr18	25679422	25679622	-	1	NA	NA	NA	74461	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.100000	0.731343	
mm_122490.1	chr14	46516353	46516553	-	1	NA	NA	NA	59398	NR_046459	100873094	Mm.318596	NR_046459		Rubie	-	RNA upstream of Bmp4 expressed in inner ear	ncRNA	0.010000	0.512438	
mm_64541.1	chr7	144263985	144264185	+	1	NA	NA	NA	-20300	NM_001081370	210274	Mm.483624	NM_001081370	ENSMUSG00000037541	Shank2	ProSAP1|mKIAA1022	SH3/ankyrin domain gene 2	protein-coding	0.015000	0.497512	
mm_144982.1	chr18	38190699	38190899	+	1	NA	NA	NA	18963	NM_029357	75599	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.025000	0.651741	
mm_38841.1	chr4	149166566	149166766	-	1	NA	NA	NA	41	NM_001081274	110208	Mm.252080	NM_025801	ENSMUSG00000028961	Pgd	0610042A05Rik|AU019875|C78335	phosphogluconate dehydrogenase	protein-coding	0.100000	0.646766	
mm_85217.1	chr9	96966500	96966700	-	1	NA	NA	NA	51755	NM_145134	211949	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0.025000	0.502488	
mm_5475.1	chr1	36643893	36644093	-	1	NA	NA	NA	39190	NM_001126046	381337	Mm.17413	NM_027957	ENSMUSG00000046337	Fam178b	1700024G10Rik|Gm990	family with sequence similarity 178, member B	protein-coding	0.005000	0.562189	
mm_7454.1	chr1	120270173	120270373	-	1	NA	NA	NA	809	NM_001085409	68428	Mm.181033	NM_133186	ENSMUSG00000026389	Steap3	1010001D01Rik|Tsap6|pHyde	STEAP family member 3	protein-coding	0.020000	0.606965	
mm_154144.1	chr19	58412066	58412266	-	1	NA	NA	NA	43232	NM_001285457	14585	Mm.88367	NM_010279	ENSMUSG00000025089	Gfra1	AU042498	glial cell line derived neurotrophic factor family receptor alpha 1	protein-coding	0.010000	0.348259	
mm_169355.1	chr14	25571322	25571522	+	1	NA	NA	NA	-15382	NR_033492	77592	Mm.444871	NM_175264		4931406H21Rik	-	RIKEN cDNA 4931406H21 gene	ncRNA	0.005000	0.537313	-100(CCATTTAGAGGT,+,0.00)
mm_76319.1	chr8	84687512	84687712	-	1	NA	NA	NA	250	NM_025788	66830	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	0.125000	0.771144	
mm_131862.1	chr16	23107658	23107858	+	1	NA	NA	NA	290	NR_110335	13682	Mm.260084	NM_013506	ENSMUSG00000022884	Eif4a2	4833432N07Rik|BM-010|Ddx2b|Eif4|eIF-4A-II|eIF4A-II	eukaryotic translation initiation factor 4A2	protein-coding	0.110000	0.592040	-33(GCCTATAAAAAA,-,0.00)
mm_85637.1	chr9	107654961	107655161	-	1	NA	NA	NA	12338	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.035000	0.542289	
mm_23837.1	chr3	82358049	82358249	+	1	NA	NA	NA	77	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0.080000	0.641791	
mm_166337.1	chr5	114707822	114708022	+	1	NA	NA	NA	143	NM_029992	77832	Mm.239698	NM_029992	ENSMUSG00000002486	Tchp	A930031F18Rik|AV279199	trichoplein, keratin filament binding	protein-coding	0.115000	0.671642	
mm_104176.1	chr11	87748752	87748952	-	1	NA	NA	NA	-8012	NR_029555	387160		NR_029555	ENSMUSG00000105196	Mir142	Mirn142|miR-142|mir-142a|mmu-mir-142|mmu-mir-142a	microRNA 142	ncRNA	0.025000	0.587065	33(GCCTTTATGAGA,-,0.00)
mm_59658.1	chr7	28180181	28180381	+	1	NA	NA	NA	-35	NM_001271370	13549	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0.105000	0.776119	
mm_60536.1	chr7	44480295	44480495	+	1	NA	NA	NA	-4122	NR_131001	71368	Mm.66246	NR_131001	ENSMUSG00000108322	5430431A17Rik	-	RIKEN cDNA 5430431A17 gene	ncRNA	0.000000	0.502488	
mm_64337.1	chr7	142376498	142376698	+	1	NA	NA	NA	-2852	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.020000	0.547264	
mm_120982.1	chr14	78849061	78849261	+	1	NA	NA	NA	-17	NM_027906	219189	Mm.159651	NM_027906	ENSMUSG00000058997	Vwa8	1300010F03Rik|4932416F07Rik|AI957255|Kiaa0564|mKIAA0564	von Willebrand factor A domain containing 8	protein-coding	0.130000	0.771144	
mm_131108.1	chr16	5050105	5050305	+	1	NA	NA	NA	137	NM_026666	170644	Mm.66356	NM_026666	ENSMUSG00000039473	Ubn1	1110029L11Rik|2610108L02Rik|AA673476|AW124741	ubinuclein 1	protein-coding	0.125000	0.691542	
mm_103912.1	chr11	83588184	83588384	-	1	NA	NA	NA	4803	NM_009139	20305	Mm.137	NM_009139	ENSMUSG00000018927	Ccl6	MRP-1|Scya6|c10	chemokine (C-C motif) ligand 6	protein-coding	0.010000	0.393035	
mm_75914.1	chr8	71463464	71463664	-	1	NA	NA	NA	93	NM_022419	64296	Mm.276383	NM_022419	ENSMUSG00000007950	Abhd8	0910001L24Rik|AB030191	abhydrolase domain containing 8	protein-coding	0.110000	0.716418	
mm_48146.1	chr5	137150700	137150900	-	1	NA	NA	NA	-34593	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.000000	0.507463	
mm_140738.1	chr17	15806987	15807187	-	1	NA	NA	NA	19499	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.000000	0.273632	
mm_66206.1	chr7	34291989	34292189	-	1	NA	NA	NA	-6480	NM_172741	233103	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	0.010000	0.358209	
mm_58426.1	chr7	3296874	3297074	+	1	NA	NA	NA	3946	NM_001093766	50918	Mm.29874	NM_016969	ENSMUSG00000068566	Myadm	D7Wsu62e	myeloid-associated differentiation marker	protein-coding	0.020000	0.572139	
mm_145828.1	chr18	65438475	65438675	+	1	NA	NA	NA	7578	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.005000	0.318408	-24(GTGTATATAAGG,-,0.00)
mm_35230.1	chr4	19708441	19708641	-	1	NA	NA	NA	463	NM_177327	107568	Mm.78312	NM_177327	ENSMUSG00000041058	Wwp1	8030445B08Rik|AIP5|SDRP1|Tiul1	WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.050000	0.487562	
mm_9145.1	chr1	170885360	170885560	-	1	NA	NA	NA	80	NM_023173	80915	Mm.34365	NM_023173	ENSMUSG00000026659	Dusp12	1190004O14Rik|AA027408|AW049275|ENSMUSG00000045460|ESTM36|LMW-DSP4|T-DSP4|VH1|mVH1	dual specificity phosphatase 12	protein-coding	0.055000	0.616915	
mm_62750.1	chr7	111156129	111156329	+	1	NA	NA	NA	-33554	NR_015573	75479	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0.020000	0.502488	-34(TCGTTTAAAAAG,-,0.00),-32(GTTTAAAAAGAG,+,0.00)
mm_87261.1	chr10	41519855	41520055	+	1	NA	NA	NA	455	NM_016898	53599	Mm.269815	NM_016898	ENSMUSG00000019818	Cd164	A115|A24|AA589639|AW540279|MGC-24|MSSP	CD164 antigen	protein-coding	0.110000	0.606965	
mm_100572.1	chr11	120762995	120763195	+	1	NA	NA	NA	21109	NM_009053	19719	Mm.871	NM_009053	ENSMUSG00000025158	Rfng	-	RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase	protein-coding	0.045000	0.606965	
mm_33264.1	chr4	127214661	127214861	+	1	NA	NA	NA	-29023	NM_030252	80284	Mm.139607	NM_030252	ENSMUSG00000042380	Smim12	BC003266	small integral membrane protein 12	protein-coding	0.095000	0.726368	
mm_63086.1	chr7	122291219	122291419	+	1	NA	NA	NA	2194	NM_008855	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.000000	0.442786	
mm_64054.1	chr7	140847657	140847857	+	1	NA	NA	NA	-159	NM_027019	69287	Mm.56404	NM_027019	ENSMUSG00000025482	Odf3	1700011O04Rik|SHIPPO1	outer dense fiber of sperm tails 3	protein-coding	0.000000	0.497512	81(TCCTTTTTAGGG,-,0.00),83(CTTTTTAGGGAG,+,0.00)
mm_25376.1	chr3	107211328	107211528	+	1	NA	NA	NA	10304	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.512438	
mm_171141.1	chr3	151624213	151624413	+	1	NA	NA	NA	125646	NM_133871	99899	Mm.30756	NM_133871	ENSMUSG00000028037	Ifi44	A430056A10Rik|AW261460|MTAP44|p44	interferon-induced protein 44	protein-coding	0.065000	0.621891	
mm_155724.1	chrX	96152790	96152990	+	1	NA	NA	NA	56845	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.015000	0.482587	
mm_80759.1	chr9	95558988	95559188	+	1	NA	NA	NA	-729	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.020000	0.527363	-97(CCCTTTAGACAC,+,0.00)
mm_159384.1	chr3	90613021	90613221	+	1	NA	NA	NA	227	NM_011313	20200	Mm.100144	NM_011313	ENSMUSG00000001025	S100a6	2A9|5B10|CALCYCLIN|Cacy|PRA	S100 calcium binding protein A6 (calcyclin)	protein-coding	0.065000	0.641791	
mm_29113.1	chr3	104865003	104865203	-	1	NA	NA	NA	597	NM_153091	229681	Mm.206379	NM_153091	ENSMUSG00000045576	St7l	St7r	suppression of tumorigenicity 7-like	protein-coding	0.095000	0.696517	
mm_155985.1	chrX	106135149	106135349	+	1	NA	NA	NA	-8026	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.010000	0.572139	
mm_173030.1	chrX	105856432	105856632	-	1	NA	NA	NA	72840	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.010000	0.402985	-71(GCTTTTAGAAGA,+,0.00)
mm_66427.1	chr7	44625735	44625935	-	1	NA	NA	NA	34949	NM_001290682	16504	Mm.40312	NM_008422	ENSMUSG00000062785	Kcnc3	KShIIID|Kcr2-3|Kv3.3	potassium voltage gated channel, Shaw-related subfamily, member 3	protein-coding	0.010000	0.582090	
mm_85775.1	chr9	109052602	109052802	-	1	NA	NA	NA	-2164	NM_026381	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.010000	0.542289	
mm_81085.1	chr9	106280927	106281127	+	1	NA	NA	NA	-34	NM_027354	70235	Mm.23054	NM_027354	ENSMUSG00000023345	Poc1a	2510040D07Rik|Wdr51a|cha	POC1 centriolar protein A	protein-coding	0.050000	0.502488	
mm_157101.1	chrX	9437530	9437730	-	1	NA	NA	NA	31694	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.005000	0.358209	-93(CTTTTTAAATAG,+,0.00)
mm_74715.1	chr8	17343526	17343726	-	1	NA	NA	NA	191759	NM_053171	94109	Mm.436988	NM_053171	ENSMUSG00000060924	Csmd1	B930082H09|mKIAA1890	CUB and Sushi multiple domains 1	protein-coding	0.005000	0.293532	
mm_128535.1	chr15	54890667	54890867	-	1	NA	NA	NA	29379	NM_015744	18606	Mm.250256	NM_015744	ENSMUSG00000022425	Enpp2	ATX|E-NPP 2|Npps2|PD-Ialpha|Pdnp2|lysoPLD	ectonucleotide pyrophosphatase/phosphodiesterase 2	protein-coding	0.000000	0.218905	
mm_84526.1	chr9	67044852	67045052	-	1	NA	NA	NA	-1081	NM_001164253	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.010000	0.378109	
mm_173209.1	chrX	72578962	72579162	-	1	NA	NA	NA	11032	NR_035528	100316827		NR_035528	ENSMUSG00000076455	Mir767	mmu-mir-767	microRNA 767	ncRNA	0.040000	0.601990	
mm_77107.1	chr8	111081575	111081775	-	1	NA	NA	NA	33	NM_181549	353287	Mm.135495	NM_181549	ENSMUSG00000033633	Clec18a	Mrcl	C-type lectin domain family 18, member A	protein-coding	0.030000	0.572139	
mm_150400.1	chr19	36554625	36554825	+	1	NA	NA	NA	86	NM_172637	226098	Mm.61107	NM_172637	ENSMUSG00000041180	Hectd2	4921524L07|A630025O09Rik|AW212605	HECT domain containing 2	protein-coding	0.195000	0.840796	
mm_172625.1	chr8	20297348	20297548	-	1	NA	NA	NA	-16	NR_030708	547150	Mm.359054	NR_030708	ENSMUSG00000071796	6820431F20Rik	-	cadherin 11 pseudogene	pseudo	0.080000	0.636816	
mm_140729.1	chr17	15527173	15527373	-	1	NA	NA	NA	28	NM_008799	18567	Mm.323	NM_008799	ENSMUSG00000014771	Pdcd2	AI528543|Pcd2|RP-8	programmed cell death 2	protein-coding	0.085000	0.696517	
mm_120444.1	chr14	65968418	65968618	+	1	NA	NA	NA	35	NM_013492	12759	Mm.200608	NM_013492	ENSMUSG00000022037	Clu	AI893575|ApoJ|Cli|D14Ucla3|SP-40|Sgp-2|Sgp2|Sugp-2	clusterin	protein-coding	0.040000	0.601990	
mm_31614.1	chr4	59033111	59033311	+	1	NA	NA	NA	-1945	NM_025277	14700	Mm.41780	NM_025277	ENSMUSG00000038607	Gng10	AV006524	guanine nucleotide binding protein (G protein), gamma 10	protein-coding	0.000000	0.402985	
mm_163349.1	chr12	17786227	17786427	+	1	NA	NA	NA	95513	NM_016677	53602	Mm.313619	NM_016677	ENSMUSG00000071379	Hpcal1	NVP-3|Nvp3|VILIP3|Vnsl3|Vsnl3	hippocalcin-like 1	protein-coding	0.065000	0.562189	
mm_6628.1	chr1	78196739	78196939	-	1	NA	NA	NA	297	NM_008781	18505	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	0.075000	0.621891	
mm_35307.1	chr4	25242164	25242364	-	1	NA	NA	NA	612	NM_021318	57756	Mm.87325	NM_021318	ENSMUSG00000028259	Fhl5	1700027G07Rik|Act	four and a half LIM domains 5	protein-coding	0.015000	0.447761	
mm_83690.1	chr9	50561192	50561392	-	1	NA	NA	NA	-24	NM_025687	66654	Mm.442255	NM_025687	ENSMUSG00000032065	Tex12	5730518K06Rik	testis expressed gene 12	protein-coding	0.135000	0.701493	
mm_71735.1	chr8	62014330	62014530	+	1	NA	NA	NA	86343	NM_001293783	234311	Mm.275233	NM_144928	ENSMUSG00000037921	Ddx60	9830118M07	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	protein-coding	0.005000	0.422886	
mm_156222.1	chrX	135263212	135263412	+	1	NA	NA	NA	-39004	NM_031390	83565	Mm.108239	NM_031390	ENSMUSG00000067360	Pramel3	-	preferentially expressed antigen in melanoma-like 3	protein-coding	0.010000	0.373134	54(AGCTATAAAAGA,-,0.00),72(CTTTTTAAAGCT,+,0.00)
mm_63902.1	chr7	139212884	139213084	+	1	NA	NA	NA	-4	NM_027164	76612	Mm.17757	NM_027164	ENSMUSG00000015980	Lrrc27	1700071K18Rik|2310044E02Rik	leucine rich repeat containing 27	protein-coding	0.055000	0.656716	
mm_83323.1	chr9	44196018	44196218	-	1	NA	NA	NA	37928	NM_007619	12402	Mm.266871	NM_007619	ENSMUSG00000034342	Cbl	4732447J05Rik|Cbl-2|c-Cbl|cbl	Casitas B-lineage lymphoma	protein-coding	0.005000	0.447761	
mm_148884.1	chr19	6645049	6645249	+	1	NA	NA	NA	-102079	NM_009203	20521	Mm.391146	NM_009203	ENSMUSG00000061742	Slc22a12	AI987855|OAT4L|Rst|Slc22al2|URAT1	solute carrier family 22 (organic anion/cation transporter), member 12	protein-coding	0.010000	0.527363	
mm_162371.1	chr1	67206732	67206932	+	1	NA	NA	NA	83805	NM_001080809	227231	Mm.343942	NM_001080809	ENSMUSG00000025991	Cps1	4732433M03Rik|CPS|D1Ucla3	carbamoyl-phosphate synthetase 1	protein-coding	0.015000	0.442786	
mm_141442.1	chr17	29716899	29717099	-	1	NA	NA	NA	18	NM_026782	68597	Mm.390979	NM_026782	ENSMUSG00000024018	Ccdc167	1110021J02Rik	coiled-coil domain containing 167	protein-coding	0.080000	0.557214	
mm_121518.1	chr14	122058252	122058452	+	1	NA	NA	NA	23678	NM_001037744	223262	Mm.297637	NM_001037744	ENSMUSG00000071229	Timm8a2	-	translocase of inner mitochondrial membrane 8A2	protein-coding	0.005000	0.592040	
mm_161324.1	chr14	48664948	48665148	-	1	NA	NA	NA	61	NM_001286483	18424	Mm.134516	NM_144841	ENSMUSG00000021848	Otx2	E130306E05Rik	orthodenticle homeobox 2	protein-coding	0.075000	0.616915	
mm_165648.1	chr3	83008410	83008610	+	1	NA	NA	NA	786	NM_001317105	99571	Mm.16422	NM_133862	ENSMUSG00000033860	Fgg	3010002H13Rik|AI256424	fibrinogen gamma chain	protein-coding	0.035000	0.487562	
mm_40071.1	chr5	34288589	34288789	+	1	NA	NA	NA	-365	NM_001015039	231125	Mm.113388	NM_001015039	ENSMUSG00000037224	Zfyve28	9630058O20Rik|Gm146|mKIAA1643	zinc finger, FYVE domain containing 28	protein-coding	0.105000	0.691542	
mm_54860.1	chr6	42597280	42597480	-	1	NA	NA	NA	-8	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.015000	0.422886	
mm_9943.1	chr1	190617373	190617573	-	1	NA	NA	NA	294297	NM_178775	320119	Mm.220912	NM_178775	ENSMUSG00000089872	Rps6kc1	AA682037|B130003F20Rik|C80612|Rpk118	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.005000	0.472637	
mm_6698.1	chr1	80758424	80758624	-	1	NA	NA	NA	29	NM_175291	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.120000	0.716418	
mm_164020.1	chr14	75174848	75175048	+	1	NA	NA	NA	38523	NM_008879	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.005000	0.532338	
mm_58646.1	chr7	6258496	6258696	+	1	NA	NA	NA	2674	NM_001177417	627821	Mm.99441	NM_001177416	ENSMUSG00000053367	Gm6792	EG627821	predicted gene 6792	protein-coding	0.010000	0.447761	51(CTCTATATAAAC,-,0.00)
mm_148289.1	chr18	82584124	82584324	-	1	NA	NA	NA	29716	NM_001025254	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.065000	0.567164	
mm_80501.1	chr9	78615363	78615563	+	1	NA	NA	NA	-83	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.040000	0.527363	
mm_75321.1	chr8	41416989	41417189	-	1	NA	NA	NA	29	NM_013522	14300	Mm.217312	NM_013522	ENSMUSG00000031590	Frg1	-	FSHD region gene 1	protein-coding	0.095000	0.611940	
mm_8267.1	chr1	139376963	139377163	-	1	NA	NA	NA	13	NM_133239	170788	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	0.010000	0.542289	
mm_84511.1	chr9	67032439	67032639	-	1	NA	NA	NA	11332	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.020000	0.452736	
mm_70524.1	chr8	12951139	12951339	+	1	NA	NA	NA	1821	NM_001159485	17207	Mm.334413	NM_178076	ENSMUSG00000031442	Mcf2l	C130040G20Rik|Dbs|Ost|mKIAA0362	mcf.2 transforming sequence-like	protein-coding	0.015000	0.552239	-61(CCTCATAAAGCC,+,0.00)
mm_23643.1	chr3	67374035	67374235	+	1	NA	NA	NA	38	NM_001039543	17349	Mm.10414	NM_010801	ENSMUSG00000048416	Mlf1	HLS7	myeloid leukemia factor 1	protein-coding	0.130000	0.666667	
mm_68066.1	chr7	101867306	101867506	-	1	NA	NA	NA	3382	NM_001252554	14275	Mm.2135	NM_008034	ENSMUSG00000001827	Folr1	FBP1|Folbp-1|Folbp1	folate receptor 1 (adult)	protein-coding	0.015000	0.427861	
mm_84030.1	chr9	57764749	57764949	-	1	NA	NA	NA	1011	NM_007713	102414	Mm.25720	NM_007713	ENSMUSG00000032316	Clk3	AI256811	CDC-like kinase 3	protein-coding	0.095000	0.701493	
mm_104558.1	chr11	96824086	96824286	-	1	NA	NA	NA	-59	NM_001130451	18023	Mm.6743	NM_008686	ENSMUSG00000038615	Nfe2l1	AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11	nuclear factor, erythroid derived 2,-like 1	protein-coding	0.040000	0.656716	
mm_55549.1	chr6	71201610	71201810	-	1	NA	NA	NA	1822	NM_017399	14080	Mm.22126	NM_017399	ENSMUSG00000054422	Fabp1	Fabpl|L-FABP	fatty acid binding protein 1, liver	protein-coding	0.020000	0.517413	
mm_161848.1	chr18	11657719	11657919	+	1	NA	NA	NA	470	NM_001081223	225182	Mm.154275	NM_175458	ENSMUSG00000041238	Rbbp8	9930104E21Rik|CtIP|RBBP-8|RIM|SAE2	retinoblastoma binding protein 8	protein-coding	0.135000	0.716418	
mm_36395.1	chr4	77775231	77775431	-	1	NA	NA	NA	436564	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.253731	56(TCTTTTATACCT,+,0.00)
mm_117672.1	chr13	93637540	93637740	-	1	NA	NA	NA	118	NM_016668	12116	Mm.329582	NM_016668	ENSMUSG00000074768	Bhmt	-	betaine-homocysteine methyltransferase	protein-coding	0.015000	0.582090	42(CTGTATAAAGAG,-,0.00)
mm_98985.1	chr11	98742037	98742237	+	1	NA	NA	NA	352	NM_001313983	21833	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.085000	0.656716	
mm_100325.1	chr11	118145982	118146182	+	1	NA	NA	NA	-16863	NM_001167746	69926	Mm.473893	NM_001167746	ENSMUSG00000033987	Dnah17	2810003K23Rik|Dnahc17|Dnahcl1|Gm1178|mKIAA3028	dynein, axonemal, heavy chain 17	protein-coding	0.025000	0.542289	
mm_106901.1	chr12	8012946	8013146	+	1	NA	NA	NA	35369	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.015000	0.482587	
mm_103129.1	chr11	70229658	70229858	-	1	NA	NA	NA	40	NM_007528	12029	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	0.045000	0.601990	
mm_140320.1	chr17	86428714	86428914	+	1	NA	NA	NA	-141636	NR_045435	72104	Mm.443401	NR_045435	ENSMUSG00000100738	2010106C02Rik	-	RIKEN cDNA 2010106C02 gene	ncRNA	0.010000	0.482587	
mm_72662.1	chr8	84872063	84872263	+	1	NA	NA	NA	52	NM_001168246	71846	Mm.229128	NM_027954	ENSMUSG00000003824	Syce2	1700013H19Rik|AA407907|Cesc1	synaptonemal complex central element protein 2	protein-coding	0.110000	0.721393	
mm_155541.1	chrX	74305159	74305359	+	1	NA	NA	NA	247	NM_010273	14567	Mm.205830	NM_010273	ENSMUSG00000015291	Gdi1	GDIA|GDIalpha	guanosine diphosphate (GDP) dissociation inhibitor 1	protein-coding	0.060000	0.611940	
mm_95823.1	chr11	55395733	55395933	+	1	NA	NA	NA	24247	NM_009242	20692	Mm.291442	NM_009242	ENSMUSG00000018593	Sparc	BM-40|ON	secreted acidic cysteine rich glycoprotein	protein-coding	0.030000	0.552239	
mm_24102.1	chr3	88138798	88138998	+	1	NA	NA	NA	-3474	NM_001310587	17261	Mm.28184	NM_133665	ENSMUSG00000001419	Mef2d	C80750	myocyte enhancer factor 2D	protein-coding	0.035000	0.656716	
mm_107970.1	chr12	72765156	72765356	+	1	NA	NA	NA	4045	NM_008910	19042	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.010000	0.318408	
mm_38885.1	chr4	149715676	149715876	-	1	NA	NA	NA	-14147	NM_001029837	18707	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol 3-kinase catalytic delta polypeptide	protein-coding	0.015000	0.527363	
mm_119537.1	chr14	47786236	47786436	+	1	NA	NA	NA	-112528	NR_045959	73961	Mm.390702	NR_045959		4930447J18Rik	4930425M13Rik	RIKEN cDNA 4930447J18 gene	ncRNA	0.005000	0.542289	
mm_27177.1	chr3	34081202	34081402	-	1	NA	NA	NA	52	NM_001286972	67713	Mm.274266	NM_026332	ENSMUSG00000027679	Dnajc19	1810055D05Rik|AA959924|Tim14	DnaJ heat shock protein family (Hsp40) member C19	protein-coding	0.130000	0.676617	
mm_39077.1	chr4	154316217	154316417	-	1	NA	NA	NA	-16422	NM_001112744	230972	Mm.38481	NM_001112744	ENSMUSG00000029032	Arhgef16	-	Rho guanine nucleotide exchange factor (GEF) 16	protein-coding	0.030000	0.412935	
mm_98556.1	chr11	95124890	95125090	+	1	NA	NA	NA	4873	NM_010055	13393	Mm.5194	NM_010055	ENSMUSG00000001510	Dlx3	AV237891|Dlx-3	distal-less homeobox 3	protein-coding	0.010000	0.383085	
mm_142415.1	chr17	45567897	45568097	-	1	NA	NA	NA	3845	NM_028662	73836	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.020000	0.572139	
mm_146330.1	chr18	81117792	81117992	+	1	NA	NA	NA	-131314	NM_178280	20689	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	sal-like 3 (Drosophila)	protein-coding	0.015000	0.547264	
mm_103580.1	chr11	78166689	78166889	-	1	NA	NA	NA	-1239	NM_009423	22032	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0.015000	0.532338	
mm_39189.1	chr4	155869730	155869930	-	1	NA	NA	NA	263	NM_028020	71957	Mm.475640	NM_028020	ENSMUSG00000029034	Cpsf3l	2410006F12Rik|AU044035	cleavage and polyadenylation specific factor 3-like	protein-coding	0.075000	0.582090	
mm_76120.1	chr8	80859728	80859928	-	1	NA	NA	NA	20651	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.005000	0.343284	-99(GGCTCTTTAAAC,-,0.00),-97(CTCTTTAAACAC,+,0.00)
mm_88297.1	chr10	75316777	75316977	+	1	NA	NA	NA	0	NM_009630	11540	Mm.333734	NM_009630	ENSMUSG00000020178	Adora2a	A2AAR|A2aR|AA2AR	adenosine A2a receptor	protein-coding	0.060000	0.676617	
mm_58233.1	chr6	145030296	145030496	-	1	NA	NA	NA	18416	NM_001024468	12035	Mm.4606	NM_007532	ENSMUSG00000030268	Bcat1	BCATc|Eca39	branched chain aminotransferase 1, cytosolic	protein-coding	0.010000	0.467662	
mm_125624.1	chr15	61988148	61988348	+	1	NA	NA	NA	2907	NM_001177352	17869	Mm.2444	NM_010849	ENSMUSG00000022346	Myc	AU016757|Myc2|Niard|Nird|bHLHe39	myelocytomatosis oncogene	protein-coding	0.050000	0.616915	
mm_119476.1	chr14	47319348	47319548	+	1	NA	NA	NA	21134	NM_178684	218975	Mm.212297	NM_178684	ENSMUSG00000021840	Mapk1ip1l	9130202B12|C130032J12Rik	mitogen-activated protein kinase 1 interacting protein 1-like	protein-coding	0.015000	0.388060	
mm_149757.1	chr19	22750571	22750771	+	1	NA	NA	NA	66	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.010000	0.417910	
mm_911.1	chr1	54681665	54681865	+	1	NA	NA	NA	-124081	NM_001163314	241062	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.020000	0.492537	
mm_42267.1	chr5	114143337	114143537	+	1	NA	NA	NA	12281	NM_011677	22256	Mm.1393	NM_011677	ENSMUSG00000029591	Ung	UNG1|UNG2	uracil DNA glycosylase	protein-coding	0.015000	0.492537	
mm_102805.1	chr11	68871753	68871953	-	1	NA	NA	NA	-16700	NM_177060	320040	Mm.305696	NM_177060	ENSMUSG00000046490	Rnf222	9930039A11Rik	ring finger protein 222	protein-coding	0.010000	0.562189	
mm_115308.1	chr13	112288698	112288898	+	1	NA	NA	NA	280	NM_001168404	77318	Mm.159895	NM_029898	ENSMUSG00000049985	Ankrd55	C030011J08Rik	ankyrin repeat domain 55	protein-coding	0.030000	0.492537	
mm_114308.1	chr13	59726614	59726814	+	1	NA	NA	NA	5038	NM_177711	238663	Mm.444776	NM_177711	ENSMUSG00000043986	Spata31d1d	4932411G14Rik|Fam75d1d	spermatogenesis associated 31 subfamily D, member 1D	protein-coding	0.050000	0.582090	
mm_117484.1	chr13	77438833	77439033	-	1	NA	NA	NA	-269757	NM_001163420	68675	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding	0.010000	0.328358	
mm_140942.1	chr17	24477498	24477698	-	1	NA	NA	NA	1480	NM_001252464	56716	Mm.289516	NM_019988	ENSMUSG00000024142	Mlst8	0610033N12Rik|AA409454|AI505104|AI851821|Gbl	MTOR associated protein, LST8 homolog (S. cerevisiae)	protein-coding	0.005000	0.487562	
mm_150288.1	chr19	34492632	34492832	+	1	NA	NA	NA	-17597	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.025000	0.427861	
mm_15198.1	chr2	154206353	154206553	+	1	NA	NA	NA	6073	NM_153418	228801	Mm.3783	NM_153418	ENSMUSG00000027485	Bpifb1	Lplunc1	BPI fold containing family B, member 1	protein-coding	0.030000	0.587065	
mm_124966.1	chr15	17103513	17103713	+	1	NA	NA	NA	325512	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.000000	0.243781	
mm_91483.1	chr10	34882308	34882508	-	1	NA	NA	NA	399008	NM_010237	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.005000	0.402985	23(CCATTTTTAAGG,-,0.00)
mm_134515.1	chr16	19200213	19200413	-	1	NA	NA	NA	86428	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.010000	0.487562	-71(GCCTATAAAAGG,-,0.00)
mm_156194.1	chrX	134059241	134059441	+	1	NA	NA	NA	165	NM_133196	108062	Mm.67938	NM_133196	ENSMUSG00000031256	Cstf2	C630034J23Rik|Cstf64|mir-3112	cleavage stimulation factor, 3' pre-RNA subunit 2	protein-coding	0.120000	0.696517	
mm_111232.1	chr12	84762438	84762638	-	1	NA	NA	NA	10574	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	Niemann-Pick type C2	protein-coding	0.010000	0.358209	
mm_44962.1	chr5	36713026	36713226	-	1	NA	NA	NA	-17105	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.045000	0.621891	
mm_85874.1	chr9	110946000	110946200	-	1	NA	NA	NA	58	NM_011562	21667	Mm.5090	NM_011562	ENSMUSG00000032494	Tdgf1	CR1|cripto	teratocarcinoma-derived growth factor 1	protein-coding	0.050000	0.572139	-29(TTCTTTTAAGGG,-,0.00),-28(TCTTTTAAGGGA,+,0.00),-27(CTTTTAAGGGAG,+,0.00)
mm_163351.1	chr12	21287412	21287612	+	1	NA	NA	NA	1215	NM_018813	54451	Mm.356778	NM_018813	ENSMUSG00000054309	Cpsf3	-	cleavage and polyadenylation specificity factor 3	protein-coding	0.010000	0.467662	
mm_24091.1	chr3	87976133	87976333	+	1	NA	NA	NA	5140	NM_016701	18008	Mm.331129	NM_016701	ENSMUSG00000004891	Nes	AA166324|C78523|ESTM46	nestin	protein-coding	0.005000	0.378109	-74(GCCCAGAAAAAG,-,0.00)
mm_166377.1	chr5	128757206	128757406	+	1	NA	NA	NA	21060	NM_021311	57749	Mm.272720	NM_021311	ENSMUSG00000029423	Piwil1	MIWI	piwi-like RNA-mediated gene silencing 1	protein-coding	0.000000	0.507463	
mm_117788.1	chr13	97035189	97035389	-	1	NA	NA	NA	-35	NR_104276	66479	Mm.390629	NM_025585	ENSMUSG00000052075	1700029F12Rik	-	RIKEN cDNA 1700029F12 gene	protein-coding	0.005000	0.477612	-17(CACTCTTAAAGG,-,0.00),-14(TCTTAAAGGGGC,+,0.00)
mm_9701.1	chr1	178989255	178989455	-	1	NA	NA	NA	460230	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.025000	0.472637	2(GCCTTTAGAGAA,+,0.00)
mm_26538.1	chr3	146123264	146123464	+	1	NA	NA	NA	1573	NM_134160	171166	Mm.114683	NM_134160	ENSMUSG00000036853	Mcoln3	6720490O21Rik|TRPML3|Va	mucolipin 3	protein-coding	0.030000	0.462687	-34(GGGTTTAAAAGG,-,0.00)
mm_124590.1	chr15	3274585	3274785	+	1	NA	NA	NA	3708	NM_009155	20363	Mm.392203	NM_009155	ENSMUSG00000064373	Selenop	AU018766|D15Ucla1|Se-P|Sepp1|selp	selenoprotein P	protein-coding	0.010000	0.472637	
mm_99382.1	chr11	102043064	102043264	+	1	NA	NA	NA	1653	NM_001160713	52685	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	0.040000	0.567164	
mm_164045.1	chr14	94919436	94919636	+	1	NA	NA	NA	-961730	NM_025733	66732	Mm.75060	NM_025733	ENSMUSG00000034689	4921530L21Rik	-	RIKEN cDNA 4921530L21 gene	protein-coding	0.015000	0.333333	16(GCCTTTATAAAA,-,0.00)
mm_57073.1	chr6	122578169	122578369	-	1	NA	NA	NA	24175	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.000000	0.472637	
mm_100621.1	chr11	121601602	121601802	+	1	NA	NA	NA	71449	NM_178664	210004	Mm.386847	NM_178664	ENSMUSG00000046605	B3gntl1	6030413G23Rik	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase-like 1	protein-coding	0.015000	0.472637	
mm_143696.1	chr17	80480324	80480524	-	1	NA	NA	NA	29	NM_009231	20662	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	son of sevenless homolog 1 (Drosophila)	protein-coding	0.140000	0.736318	
mm_12725.1	chr2	78709405	78709605	+	1	NA	NA	NA	-159542	NM_009454	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.010000	0.343284	73(CCTTTAAAACAC,+,0.00)
mm_127494.1	chr15	101373562	101373762	+	1	NA	NA	NA	-3537	NM_028770	74127	Mm.440055	NM_028770	ENSMUSG00000037185	Krt80	1200016G03Rik|2310041I20Rik|Kb20	keratin 80	protein-coding	0.040000	0.547264	
mm_4044.1	chr1	165774662	165774862	+	1	NA	NA	NA	10982	NM_011804	433375	Mm.294885	NM_011804	ENSMUSG00000040713	Creg1	AA755314|Creg	cellular repressor of E1A-stimulated genes 1	protein-coding	0.025000	0.472637	
mm_155251.1	chrX	57223685	57223885	+	1	NA	NA	NA	11642	NM_011616	21947	Mm.4861	NM_011616	ENSMUSG00000031132	Cd40lg	CD154|CD40-L|Cd40l|HIGM1|IGM|IMD3|Ly-62|Ly62|T-BAM|TRAP|Tnfsf5|Tnlg8b|gp39	CD40 ligand	protein-coding	0.000000	0.442786	
mm_35678.1	chr4	43661884	43662084	-	1	NA	NA	NA	-5539	NM_026871	68917	Mm.25285	NM_026871	ENSMUSG00000028470	Hint2	1190005L05Rik	histidine triad nucleotide binding protein 2	protein-coding	0.020000	0.532338	
mm_30118.1	chr3	140964354	140964554	-	1	NA	NA	NA	247901	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding	0.000000	0.373134	
mm_68972.1	chr7	126584776	126584976	-	1	NA	NA	NA	-132	NM_138310	171504	Mm.170665	NM_138310	ENSMUSG00000042759	Apobr	Apob-48r|Apob48r	apolipoprotein B receptor	protein-coding	0.015000	0.592040	
mm_130921.1	chr15	102707277	102707477	-	1	NA	NA	NA	14801	NM_026192	67488	Mm.71682	NM_026192	ENSMUSG00000023055	Calcoco1	1810009B06Rik|Cocoa|Gcap11|mKIAA1536	calcium binding and coiled coil domain 1	protein-coding	0.015000	0.487562	
mm_129318.1	chr15	77761675	77761875	-	1	NA	NA	NA	-6546	NM_001081970	239552	Mm.125650	NM_001081970	ENSMUSG00000056656	Apol8	9830006J20Rik|APOL-II|Apol2	apolipoprotein L 8	protein-coding	0.015000	0.606965	
mm_115333.1	chr13	112479948	112480148	+	1	NA	NA	NA	15978	NM_010560	16195	Mm.4364	NM_010560	ENSMUSG00000021756	Il6st	5133400A03Rik|AA389424|BB405851|CD130|D13Ertd699e|gp130	interleukin 6 signal transducer	protein-coding	0.035000	0.507463	
mm_113460.1	chr13	35967774	35967974	+	1	NA	NA	NA	-32	NM_029628	76487	Mm.44745	NM_029628	ENSMUSG00000050423	Ppp1r3g	1600032L17Rik	protein phosphatase 1, regulatory (inhibitor) subunit 3G	protein-coding	0.035000	0.636816	
mm_79602.1	chr9	58488937	58489137	+	1	NA	NA	NA	434	NM_176921	319477	Mm.153674	NM_176921	ENSMUSG00000066607	6030419C18Rik	-	RIKEN cDNA 6030419C18 gene	protein-coding	0.095000	0.681592	
mm_28112.1	chr3	86551036	86551236	-	1	NA	NA	NA	-2853	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2 (C. elegans)	protein-coding	0.015000	0.497512	-80(GTTTTAATACAC,+,0.00)
mm_114318.1	chr13	60248466	60248666	+	1	NA	NA	NA	43095	NR_036449	100503759	Mm.38101	NM_177810		Gm5084	A030007L22|EG328264	predicted gene 5084	ncRNA	0.060000	0.517413	
mm_153785.1	chr19	45812285	45812485	-	1	NA	NA	NA	-94	NM_001276358	80906	Mm.213204	NM_030716	ENSMUSG00000025221	Kcnip2	KChIP2	Kv channel-interacting protein 2	protein-coding	0.040000	0.606965	-73(GACCTGAAAAGG,-,0.00)
mm_68903.1	chr7	126453311	126453511	-	1	NA	NA	NA	9662	NM_007504	11937	Mm.35134	NM_007504	ENSMUSG00000030730	Atp2a1	SERCA1	ATPase, Ca++ transporting, cardiac muscle, fast twitch 1	protein-coding	0.010000	0.507463	
mm_890.1	chr1	52845005	52845205	+	1	NA	NA	NA	67	NM_146108	227095	Mm.222063	NM_146108	ENSMUSG00000041426	Hibch	2610509I15Rik|HIBYL-COA-H	3-hydroxyisobutyryl-Coenzyme A hydrolase	protein-coding	0.040000	0.601990	
mm_26269.1	chr3	142503008	142503208	+	1	NA	NA	NA	6174	NM_153564	229898	Mm.459245	NM_153564	ENSMUSG00000105504	Gbp5	5330409J06Rik|Gbp5a	guanylate binding protein 5	protein-coding	0.005000	0.442786	
mm_154056.1	chr19	55114541	55114741	-	1	NA	NA	NA	-15194	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT1	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.015000	0.532338	-55(CTATTTATAGAA,+,0.00)
mm_86997.1	chr10	26772402	26772602	+	1	NA	NA	NA	-10	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.030000	0.577114	
mm_23661.1	chr3	68468086	68468286	+	1	NA	NA	NA	3	NM_001282045	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.005000	0.557214	-70(CCTTATATGGTG,+,0.00),-47(GCCCCTTTAAGG,-,0.00),-46(CCCCTTTAAGGC,-,0.00),-45(CCCTTTAAGGCC,+,0.00),-44(CCTTTAAGGCCA,+,0.00)
mm_127079.1	chr15	97424503	97424703	+	1	NA	NA	NA	-177316	NM_001164602	105827	Mm.24005	NM_178114	ENSMUSG00000048218	Amigo2	AI415330|AMIGO-2|AW208913|Ali1	adhesion molecule with Ig like domain 2	protein-coding	0.020000	0.497512	
mm_49802.1	chr6	35996986	35997186	+	1	NA	NA	NA	-390998	NM_203491	243764	Mm.448632	NM_203491	ENSMUSG00000045613	Chrm2	AChR-M2|Chrm-2|M2	cholinergic receptor, muscarinic 2, cardiac	protein-coding	0.000000	0.522388	
mm_115068.1	chr13	101455638	101455838	+	1	NA	NA	NA	-58158	NR_046187	78136	Mm.399065	NR_046187		4922502H24Rik	-	RIKEN cDNA 4922502H24 gene	ncRNA	0.000000	0.502488	
mm_97411.1	chr11	77953758	77953958	+	1	NA	NA	NA	23019	NM_021286	20370	Mm.229330	NM_021286	ENSMUSG00000000632	Sez6	BSRP-C|D11Bhm177e|sez-6	seizure related gene 6	protein-coding	0.010000	0.557214	
mm_76070.1	chr8	78810128	78810328	-	1	NA	NA	NA	10924	NM_001191004	78651	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.020000	0.497512	
mm_7845.1	chr1	132360577	132360777	-	1	NA	NA	NA	7271	NM_001311108	68875	Mm.273785	NM_178874	ENSMUSG00000042066	Tmcc2	1110063G11Rik	transmembrane and coiled-coil domains 2	protein-coding	0.060000	0.636816	
mm_4763.1	chr1	182452635	182452835	+	1	NA	NA	NA	43568	NM_173378	209456	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.020000	0.437811	-89(CCTTTACAGGGC,+,0.00)
mm_125067.1	chr15	25940961	25941161	+	1	NA	NA	NA	235	NM_025459	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.020000	0.512438	57(CTTCTTAGAGCC,+,0.00)
mm_6688.1	chr1	80665232	80665432	-	1	NA	NA	NA	20	NM_001285927	210293	Mm.133473	NM_175291	ENSMUSG00000038608	Dock10	9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694	dedicator of cytokinesis 10	protein-coding	0.010000	0.482587	
mm_102781.1	chr11	68387081	68387281	-	1	NA	NA	NA	-355	NM_008744	18208	Mm.39095	NM_008744	ENSMUSG00000020902	Ntn1	AI561871|BC019633|Netrin-1	netrin 1	protein-coding	0.075000	0.651741	
mm_28927.1	chr3	98859616	98859816	-	1	NA	NA	NA	78	NM_001304800	15492	Mm.140811	NM_008293	ENSMUSG00000027871	Hsd3b1	3-beta-HSD I|D3Ertd383e	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	protein-coding	0.010000	0.422886	
mm_139299.1	chr17	48346312	48346512	+	1	NA	NA	NA	11	NM_001272078	83433	Mm.261623	NM_031254	ENSMUSG00000023992	Trem2	TREM-2|Trem2a|Trem2b|Trem2c	triggering receptor expressed on myeloid cells 2	protein-coding	0.015000	0.542289	
mm_65813.1	chr7	29042214	29042414	-	1	NA	NA	NA	41380	NR_035489	100316710		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	0.010000	0.442786	19(CCATATATACAC,+,0.00)
mm_149344.1	chr19	10850384	10850584	+	1	NA	NA	NA	7940	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.000000	0.378109	
mm_16479.1	chr2	180836097	180836297	+	1	NA	NA	NA	-57843	NR_029538	723951		NR_029538	ENSMUSG00000065454	Mir124a-3	Mirn124a-3|mir-124-3|mir-124a-3	microRNA 124a-3	ncRNA	0.005000	0.527363	
mm_135405.1	chr16	44746163	44746363	-	1	NA	NA	NA	100	NM_001159329	66067	Mm.34520	NM_025332	ENSMUSG00000022668	Gtpbp8	0610037H22Rik	GTP-binding protein 8 (putative)	protein-coding	0.055000	0.587065	
mm_96852.1	chr11	70048312	70048512	+	1	NA	NA	NA	-5712	NM_001291131	11889	Mm.6559	NM_009714	ENSMUSG00000020884	Asgr1	ASGPR1|Asgr|Asgr-1|HL-1	asialoglycoprotein receptor 1	protein-coding	0.000000	0.358209	
mm_171967.1	chr5	87370432	87370632	-	1	NA	NA	NA	-33337	NM_028094	72094	Mm.482739	NM_028094	ENSMUSG00000035780	Ugt2a3	2010321J07Rik	UDP glucuronosyltransferase 2 family, polypeptide A3	protein-coding	0.005000	0.407960	
mm_131815.1	chr16	22920223	22920423	+	1	NA	NA	NA	101	NM_001083904	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.030000	0.477612	
mm_66578.1	chr7	45336395	45336595	-	1	NA	NA	NA	1226	NM_010473	15464	Mm.39968	NM_010473	ENSMUSG00000038239	Hrc	-	histidine rich calcium binding protein	protein-coding	0.010000	0.477612	
mm_165472.1	chr2	164289491	164289691	+	1	NA	NA	NA	323	NM_021363	64335	Mm.389393	NM_021363	ENSMUSG00000017003	Svs3a	9530026M05Rik|BB121242|Semg2|Svp-3|Svp3|Svs3	seminal vesicle secretory protein 3A	protein-coding	0.000000	0.447761	
mm_7959.1	chr1	133929932	133930132	-	1	NA	NA	NA	-8631	NM_054077	116847	Mm.214514	NM_054077	ENSMUSG00000041577	Prelp	7330409J17Rik|SLRR2A	proline arginine-rich end leucine-rich repeat	protein-coding	0.005000	0.462687	
mm_97622.1	chr11	78957378	78957578	+	1	NA	NA	NA	27446	NM_001159301	16859	Mm.341434	NM_010708	ENSMUSG00000001123	Lgals9	AA407335|AI194909|AI265545|LGALS35|Lgals5|gal-9|galectin-9	lectin, galactose binding, soluble 9	protein-coding	0.040000	0.582090	
mm_173148.1	chrX	24008326	24008526	+	1	NA	NA	NA	115663	NM_001034864	236749	Mm.296422	NM_001034864	ENSMUSG00000068113	Gm4907	EG236749	predicted gene 4907	protein-coding	0.015000	0.457711	
mm_40315.1	chr5	43868734	43868934	+	1	NA	NA	NA	25	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.015000	0.567164	
mm_90767.1	chr10	5805259	5805459	-	1	NA	NA	NA	106	NM_025995	67141	Mm.197520	NM_025995	ENSMUSG00000019773	Fbxo5	2510044I10Rik|C85305|Emi1|Fbxo31	F-box protein 5	protein-coding	0.110000	0.646766	-76(CGCCTTTTAAGA,-,0.00),-75(GCCTTTTAAGAG,-,0.00),-74(CCTTTTAAGAGC,+,0.00),-73(CTTTTAAGAGCT,+,0.00)
mm_17977.1	chr2	37689058	37689258	-	1	NA	NA	NA	-41873	NM_009261	20744	Mm.237095	NM_009261	ENSMUSG00000026915	Strbp	6430510M02Rik|AI852513|C230082I21Rik|C86322|Spnr	spermatid perinuclear RNA binding protein	protein-coding	0.005000	0.343284	65(GCTTTTATGTCA,+,0.00)
mm_109107.1	chr12	105337086	105337286	+	1	NA	NA	NA	193	NR_125773	69952	Mm.158311	NR_045047	ENSMUSG00000097929	Tunar	2810011L19Rik|Tuna	Tcl1 upstream neural differentiation associated RNA	ncRNA	0.120000	0.751244	
mm_159809.1	chr5	118560423	118560623	+	1	NA	NA	NA	-196	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.205000	0.830846	
mm_107523.1	chr12	40465119	40465319	+	1	NA	NA	NA	19166	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.010000	0.432836	
mm_9171.1	chr1	170976488	170976688	-	1	NA	NA	NA	-517	NM_010187	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.020000	0.487562	
mm_45216.1	chr5	53008964	53009164	-	1	NA	NA	NA	-16772	NR_040413	75954	Mm.258937	NR_040413	ENSMUSG00000106352	5033403H07Rik	-	RIKEN cDNA 5033403H07 gene	ncRNA	0.000000	0.492537	-25(GGACTTAAAAGA,-,0.00)
mm_99772.1	chr11	107025773	107025973	+	1	NA	NA	NA	-2350	NM_001163473	69066	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	OTTMUSG00000003581	RIKEN cDNA 1810010H24 gene	protein-coding	0.055000	0.601990	
mm_7126.1	chr1	90969293	90969493	-	1	NA	NA	NA	227	NM_008998	19329	Mm.279780	NM_008998	ENSMUSG00000026304	Rab17	AW413472	RAB17, member RAS oncogene family	protein-coding	0.025000	0.626866	
mm_158220.1	chrX	105929303	105929503	-	1	NA	NA	NA	-31	NM_009530	22589	Mm.10141	NM_009530	ENSMUSG00000031229	Atrx	4833408C14Rik|AI447451|ATR2|DXHXS6677E|HP1-BP38|Hp1bp2|Hp1bp38|MRXS3|RAD54L|Rad54|XH2|Xnp|ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked	protein-coding	0.055000	0.547264	
mm_121098.1	chr14	99314627	99314827	+	1	NA	NA	NA	16036	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.015000	0.223881	
mm_158094.1	chrX	101420256	101420456	-	1	NA	NA	NA	-134	NM_019831	56364	Mm.23458	NM_019831	ENSMUSG00000031310	Zmym3	9030216B10Rik|AW122925|DXS6673El|Zfp261	zinc finger, MYM-type 3	protein-coding	0.055000	0.686567	
mm_97795.1	chr11	82933386	82933586	+	1	NA	NA	NA	-18616	NM_183201	327978	Mm.42147	NM_183201	ENSMUSG00000054404	Slfn5	AI956840	schlafen 5	protein-coding	0.010000	0.442786	
mm_19259.1	chr2	84775329	84775529	-	1	NA	NA	NA	0	NM_009776	12258	Mm.38888	NM_009776	ENSMUSG00000023224	Serping1	C1INH|C1nh	serine (or cysteine) peptidase inhibitor, clade G, member 1	protein-coding	0.010000	0.497512	
mm_27303.1	chr3	49743792	49743992	-	1	NA	NA	NA	13424	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding	0.030000	0.393035	
mm_163004.1	chr11	35834278	35834478	-	1	NA	NA	NA	150	NM_025936	104458	Mm.284906	NM_025936	ENSMUSG00000018848	Rars	2610011N19Rik|2610037E21Rik|AL033339|AW985894	arginyl-tRNA synthetase	protein-coding	0.110000	0.731343	
mm_94433.1	chr11	6292062	6292262	+	1	NA	NA	NA	-396	NM_001252288	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.100000	0.666667	
mm_38506.1	chr4	141135143	141135343	-	1	NA	NA	NA	4553	NR_102344	213491	Mm.332006	NM_174996	ENSMUSG00000040842	Szrd1	1110022I03|D4Ertd22e	SUZ RNA binding domain containing 1	protein-coding	0.015000	0.517413	
mm_13512.1	chr2	109899870	109900070	+	1	NA	NA	NA	9092	NM_011699	22343	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	0.000000	0.313433	-69(CTCTTTATGGAC,+,0.00)
mm_73142.1	chr8	94982075	94982275	+	1	NA	NA	NA	-2224	NM_018882	14766	Mm.290834	NM_018882	ENSMUSG00000031785	Adgrg1	Cyt28|Gpr56|TM7LN4|TM7XN1	adhesion G protein-coupled receptor G1	protein-coding	0.020000	0.527363	
mm_81852.1	chr9	118703254	118703454	+	1	NA	NA	NA	-8338	NM_001113514	104099	Mm.335520	NM_133721	ENSMUSG00000039115	Itga9	(alpha)9|2610002H11Rik|6720458D17Rik|AI461869|D130073C02|D9Ertd428e	integrin alpha 9	protein-coding	0.010000	0.537313	
mm_38109.1	chr4	134534870	134535070	-	1	NA	NA	NA	298	NM_001256112	76824	Mm.30153	NM_029759	ENSMUSG00000046671	Mtfr1l	2410166I05Rik|AI480750|Fam54b	mitochondrial fission regulator 1-like	protein-coding	0.135000	0.761194	
mm_95502.1	chr11	51884175	51884375	+	1	NA	NA	NA	-26794	NM_199299	76901	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.005000	0.562189	
mm_39856.1	chr5	30921746	30921946	+	1	NA	NA	NA	287	NM_001310524	16548	Mm.22451	NM_008439	ENSMUSG00000029162	Khk	-	ketohexokinase	protein-coding	0.025000	0.597015	
mm_85506.1	chr9	106235395	106235595	-	1	NA	NA	NA	12235	NM_001291835	11655	Mm.290578	NM_020559	ENSMUSG00000032786	Alas1	ALAS|ALAS-N|Alas-1|Alas-h	aminolevulinic acid synthase 1	protein-coding	0.050000	0.577114	
mm_107724.1	chr12	57227779	57227979	+	1	NA	NA	NA	-2533	NM_001037746	328099	Mm.268180	NM_001037746	ENSMUSG00000079104	Prps1l3	AU021838|AW536152|Gm5081	phosphoribosyl pyrophosphate synthetase 1-like 3	protein-coding	0.030000	0.512438	
mm_138446.1	chr17	35135120	35135320	+	1	NA	NA	NA	42	NM_057171	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.145000	0.741294	
mm_16192.1	chr2	172977788	172977988	+	1	NA	NA	NA	-1954	NM_012046	26972	Mm.23495	NM_012046	ENSMUSG00000005883	Spo11	AI449549|Spo11a|Spo11b	SPO11 meiotic protein covalently bound to DSB	protein-coding	0.015000	0.492537	-64(GGACATAAAAGG,-,0.00)
mm_85945.1	chr9	112104864	112105064	-	1	NA	NA	NA	13747	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.010000	0.462687	
mm_34110.1	chr4	139193183	139193383	+	1	NA	NA	NA	384	NM_001037761	12345	Mm.2945	NM_009798	ENSMUSG00000028745	Capzb	1700120C01Rik|AI325129|CPB1|CPB2|CPbeat2|CPbeta1|CPbeta2|Cappb1	capping protein (actin filament) muscle Z-line, beta	protein-coding	0.040000	0.666667	
mm_105148.1	chr11	101462352	101462552	-	1	NA	NA	NA	3747	NM_012037	26949	Mm.29210	NM_012037	ENSMUSG00000034993	Vat1	VAT-1	vesicle amine transport 1	protein-coding	0.045000	0.597015	
mm_98420.1	chr11	94641219	94641419	+	1	NA	NA	NA	11495	NM_133807	98238	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	0.070000	0.587065	
mm_7683.1	chr1	128589339	128589539	-	1	NA	NA	NA	2860	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.035000	0.577114	
mm_21869.1	chr2	165949712	165949912	-	1	NA	NA	NA	-42825	NM_008679	17979	Mm.469663	NM_008679	ENSMUSG00000027678	Ncoa3	2010305B15Rik|AW321064|Actr|Aib1|KAT13B|Rac3|Src3|Tram-1|Tram1|bHLHe42|p/Cip|pCip	nuclear receptor coactivator 3	protein-coding	0.010000	0.542289	
mm_59339.1	chr7	25471785	25471985	+	1	NA	NA	NA	5740	NM_001039185	26365	Mm.322502	NM_011926	ENSMUSG00000074272	Ceacam1	Bgp|Bgp1|C-CAM|CD66a|Cc1|Cea-1|Cea-7|Cea1|Cea7|Hv-2|Hv2|MHVR|MHVR1|Mhv-1|bb-1|mCEA1|mmCGM1|mmCGM1a|mmCGM2	carcinoembryonic antigen-related cell adhesion molecule 1	protein-coding	0.020000	0.482587	-4(CTCTTAATAGGG,+,0.00)
mm_2323.1	chr1	92058874	92059074	+	1	NA	NA	NA	121367	NM_207225	208727	Mm.318567	NM_207225	ENSMUSG00000026313	Hdac4	4932408F19Rik|HD4	histone deacetylase 4	protein-coding	0.010000	0.502488	
mm_168494.1	chr11	51455582	51455782	-	1	NA	NA	NA	-129075	NM_028398	72947	Mm.256875	NM_028398	ENSMUSG00000020359	Phykpl	2900006B13Rik|Agxt2l2	5-phosphohydroxy-L-lysine phospholyase	protein-coding	0.000000	0.517413	
mm_31678.1	chr4	62286379	62286579	+	1	NA	NA	NA	50	NM_025286	20530	Mm.292539	NM_025286	ENSMUSG00000066152	Slc31a2	AI604396|CTR2	solute carrier family 31, member 2	protein-coding	0.120000	0.691542	
mm_44915.1	chr5	35722375	35722575	-	1	NA	NA	NA	6801	NM_194344	231147	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.000000	0.452736	
mm_75025.1	chr8	31918688	31918888	-	1	NA	NA	NA	-585	NM_178591	211323	Mm.153432	NM_178591	ENSMUSG00000062991	Nrg1	6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF	neuregulin 1	protein-coding	0.060000	0.626866	
mm_152383.1	chr19	10304760	10304960	-	1	NA	NA	NA	17	NM_198114	269060	Mm.329718	NM_198114	ENSMUSG00000035735	Dagla	Nsddr	diacylglycerol lipase, alpha	protein-coding	0.140000	0.791045	
mm_91154.1	chr10	20505478	20505678	-	1	NA	NA	NA	42750	NM_001347366	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.025000	0.527363	
mm_167361.1	chr8	84846154	84846354	+	1	NA	NA	NA	677	NM_007591	12317	Mm.1971	NM_007591	ENSMUSG00000003814	Calr	CRT|Calregulin	calreticulin	protein-coding	0.025000	0.507463	
mm_133365.1	chr16	84705473	84705673	+	1	NA	NA	NA	-7450	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.000000	0.462687	
mm_53582.1	chr6	137425264	137425464	+	1	NA	NA	NA	14643	NM_001164403	19277	Mm.186361	NM_011216	ENSMUSG00000030223	Ptpro	D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O	protein tyrosine phosphatase, receptor type, O	protein-coding	0.010000	0.432836	
mm_159572.1	chr4	115411543	115411743	+	1	NA	NA	NA	19	NM_172306	13118	Mm.448292	NM_172306	ENSMUSG00000078597	Cyp4a12b	BC060945|Cyp4a12	cytochrome P450, family 4, subfamily a, polypeptide 12B	protein-coding	0.000000	0.527363	
mm_127333.1	chr15	100461103	100461303	+	1	NA	NA	NA	-7831	NM_134093	68614	Mm.275272	NM_134093	ENSMUSG00000037353	Letmd1	1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr	LETM1 domain containing 1	protein-coding	0.035000	0.557214	
mm_167797.1	chr9	123927268	123927468	-	1	NA	NA	NA	41324	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.020000	0.477612	-33(GGCTATTTGAGC,-,0.00)
mm_33127.1	chr4	124839859	124840059	+	1	NA	NA	NA	10605	NM_001347196	68920	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	0.000000	0.427861	
mm_41785.1	chr5	103722862	103723062	+	1	NA	NA	NA	-31200	NM_133919	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.020000	0.492537	
mm_71126.1	chr8	36458035	36458235	+	1	NA	NA	NA	-31056	NM_176952	319582	Mm.180924	NM_176952	ENSMUSG00000039620	6430573F11Rik	Kiaa1456|TRM9L	RIKEN cDNA 6430573F11 gene	protein-coding	0.100000	0.646766	
mm_92847.1	chr10	81523989	81524189	-	1	NA	NA	NA	136	NM_010304	14676	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.020000	0.676617	
mm_90833.1	chr10	8451724	8451924	-	1	NA	NA	NA	67001	NM_177387	338362	Mm.41163	NM_177387	ENSMUSG00000047712	Ust	D930010O20Rik|UA2OST	uronyl-2-sulfotransferase	protein-coding	0.030000	0.477612	
mm_169747.1	chr1	58646524	58646724	+	1	NA	NA	NA	-6017	NR_045007	100504501	Mm.440933	NR_045007	ENSMUSG00000102059	Gm20257	-	caspase 8 pseudogene	pseudo	0.060000	0.492537	
mm_101879.1	chr11	48902076	48902276	-	1	NA	NA	NA	-24	NM_001024230	432555	Mm.338931	NM_001024230	ENSMUSG00000058163	Gm5431	EG432555|Irgb9b8	predicted gene 5431	protein-coding	0.005000	0.462687	34(CTCCCTTTAAGG,-,0.00),36(CCCTTTAAGGAC,+,0.00)
mm_166630.1	chr6	78466799	78466999	-	1	NA	NA	NA	1975	NM_011260	19695	Mm.252385	NM_011260	ENSMUSG00000030017	Reg3g	AI449515|REG-3-gamma|reg III-gamma	regenerating islet-derived 3 gamma	protein-coding	0.005000	0.467662	
mm_170354.1	chr1	85111708	85111908	+	1	NA	NA	NA	-1955	NM_213615	381287	Mm.487565	NM_213615	ENSMUSG00000089844	A530032D15Rik	Gm1888	RIKEN cDNA A530032D15Rik gene	protein-coding	0.030000	0.562189	
mm_14418.1	chr2	130450218	130450418	+	1	NA	NA	NA	40	NM_001163688	19262	Mm.224246	NM_008980	ENSMUSG00000027303	Ptpra	Ptpa|Ptpalpha|Rptpalpha|Rptra|Rptralpha	protein tyrosine phosphatase, receptor type, A	protein-coding	0.110000	0.696517	
mm_95501.1	chr11	51884043	51884243	+	1	NA	NA	NA	-26662	NM_199299	76901	Mm.259996	NM_199299	ENSMUSG00000020387	Jade2	1200017K05Rik|AI480685|Phf15|mKIAA0239	jade family PHD finger 2	protein-coding	0.000000	0.497512	
mm_35209.1	chr4	19608692	19608892	-	1	NA	NA	NA	33726	NM_025476	66302	Mm.440686	NM_025476	ENSMUSG00000028229	Rmdn1	Fam82b|RMD-1	regulator of microtubule dynamics 1	protein-coding	0.005000	0.452736	
mm_55071.1	chr6	49056679	49056879	-	1	NA	NA	NA	-17016	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.010000	0.402985	-98(TGCTTTATAAGT,-,0.00)
mm_40416.1	chr5	53267060	53267260	+	1	NA	NA	NA	54	NM_001145433	66278	Mm.27900	NM_001145433	ENSMUSG00000061461	Smim20	1110067B18Rik|1810013D10Rik|N28078	small integral membrane protein 20	protein-coding	0.095000	0.686567	
mm_136127.1	chr16	85901026	85901226	-	1	NA	NA	NA	-1	NM_011782	23794	Mm.112933	NM_011782	ENSMUSG00000022894	Adamts5	9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)	protein-coding	0.075000	0.601990	-33(CCCTTTAAGAGG,-,0.00),-32(CCTTTAAGAGGC,+,0.00)
mm_78697.1	chr9	41164238	41164438	+	1	NA	NA	NA	-6844	NM_176860	72828	Mm.133615	NM_176860	ENSMUSG00000032020	Ubash3b	2810457I06Rik|BB125008|TULA-2|p70	ubiquitin associated and SH3 domain containing, B	protein-coding	0.015000	0.517413	
mm_128687.1	chr15	60921184	60921384	-	1	NA	NA	NA	-14	NM_001081067	117586	Mm.291499	NM_001081067	ENSMUSG00000022347	A1bg	C44	alpha-1-B glycoprotein	protein-coding	0.010000	0.542289	
mm_7367.1	chr1	106714174	106714374	-	1	NA	NA	NA	16	NM_009741	12043	Mm.257460	NM_009741	ENSMUSG00000057329	Bcl2	AW986256|Bcl-2|C430015F12Rik|D630044D05Rik|D830018M01Rik	B cell leukemia/lymphoma 2	protein-coding	0.155000	0.800995	
mm_35295.1	chr4	22486508	22486708	-	1	NA	NA	NA	1758	NM_008899	18992	Mm.129387	NM_008899	ENSMUSG00000095139	Pou3f2	9430075J19Rik|A230098E07Rik|Brn-2|Brn2|OTF-7|Otf7|oct-7	POU domain, class 3, transcription factor 2	protein-coding	0.010000	0.338308	-57(CCTTAAAAAAGG,+,0.00)
mm_100013.1	chr11	114880928	114881128	+	1	NA	NA	NA	-9013	NM_001347654	217303	Mm.294439	NM_170758	ENSMUSG00000034652	Cd300a	B230315M08Rik|Clm8|LMIR1|MAIR-I|MAIR-Ia|MMAC8|Pigr4|mcpir1	CD300A molecule	protein-coding	0.000000	0.567164	
mm_115962.1	chr13	23764109	23764309	-	1	NA	NA	NA	541	NM_030609	80838	Mm.480242	NM_030609	ENSMUSG00000049539	Hist1h1a	H1.1|H1a|H1f1|H1var3	histone cluster 1, H1a	protein-coding	0.020000	0.522388	
mm_92650.1	chr10	80399309	80399509	-	1	NA	NA	NA	122	NM_013595	17192	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.160000	0.805970	
mm_89045.1	chr10	82860191	82860391	+	1	NA	NA	NA	-50	NM_001042514	50493	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	0.055000	0.537313	
mm_33571.1	chr4	132274309	132274509	+	1	NA	NA	NA	34	NM_025579	66464	Mm.331926	NM_025579	ENSMUSG00000028899	Taf12	20kDa|2810422D08Rik|AW557038|Taf2J	TATA-box binding protein associated factor 12	protein-coding	0.110000	0.691542	
mm_112067.1	chr12	111981024	111981224	-	1	NA	NA	NA	-373	NM_001127685	217874	Mm.134213	NM_001127685	ENSMUSG00000091402	Rd3l	A930011N13	retinal degeneration 3-like	protein-coding	0.020000	0.497512	
mm_130801.1	chr15	101707456	101707656	-	1	NA	NA	NA	5335	NM_027011	110308	Mm.451847	NM_027011	ENSMUSG00000061527	Krt5	3300001P10Rik|AW146334|CK5|K5|Krt2-5|Tfip8	keratin 5	protein-coding	0.030000	0.636816	
mm_156362.1	chrX	139524740	139524940	+	1	NA	NA	NA	-38500	NM_001254761	66889	Mm.27764	NM_023270	ENSMUSG00000031438	Rnf128	1300002C13Rik|AI987883|GRAIL|Greul1	ring finger protein 128	protein-coding	0.005000	0.467662	
mm_7226.1	chr1	93342779	93342979	-	1	NA	NA	NA	-91	NM_080850	269224	Mm.379454	NM_080850	ENSMUSG00000026274	Pask	mKIAA0135	PAS domain containing serine/threonine kinase	protein-coding	0.080000	0.597015	
mm_27026.1	chr3	26116223	26116423	-	1	NA	NA	NA	36984	NM_001163387	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.010000	0.442786	
mm_39106.1	chr4	154924313	154924513	-	1	NA	NA	NA	3664	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.005000	0.557214	
mm_17849.1	chr2	34725344	34725544	-	1	NA	NA	NA	29788	NM_025709	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.015000	0.432836	33(GTGTATATAAGT,-,0.00)
mm_1945.1	chr1	86306690	86306890	+	1	NA	NA	NA	3569	NM_145222	227327	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.010000	0.592040	
mm_95694.1	chr11	54326930	54327130	+	1	NA	NA	NA	12127	NM_001033599	216739	Mm.267478	NM_144823	ENSMUSG00000020333	Acsl6	A330035H04Rik|AW050338|Facl6|LACS|Lacsl|mKIAA0837	acyl-CoA synthetase long-chain family member 6	protein-coding	0.020000	0.537313	
mm_37259.1	chr4	118437171	118437371	-	1	NA	NA	NA	72	NM_023223	107995	Mm.261764	NM_023223	ENSMUSG00000006398	Cdc20	2310042N09Rik|C87100|p55CDC	cell division cycle 20	protein-coding	0.080000	0.601990	
mm_115037.1	chr13	99415055	99415255	+	1	NA	NA	NA	-2329	NR_015515	320893	Mm.470842	NR_015515		6430562O15Rik	-	RIKEN cDNA 6430562O15 gene	ncRNA	0.030000	0.552239	
mm_109295.1	chr12	109559656	109559856	+	1	NA	NA	NA	-3936	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.025000	0.487562	
mm_29244.1	chr3	107218042	107218242	-	1	NA	NA	NA	3590	NM_001111143	229697	Mm.297051	NM_001111143	ENSMUSG00000046213	Cym	Gm131	chymosin	protein-coding	0.015000	0.542289	
mm_168510.1	chr1	156523872	156524072	+	1	NA	NA	NA	-34815	NM_009595	11352	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0.070000	0.621891	
mm_44036.1	chr5	147488035	147488235	+	1	NA	NA	NA	57555	NM_028291	72587	Mm.320469	NM_028291	ENSMUSG00000029647	Pan3	2700050F09Rik|A430027N15Rik|AU014670	PAN3 poly(A) specific ribonuclease subunit	protein-coding	0.015000	0.432836	
mm_121289.1	chr14	105258673	105258873	+	1	NA	NA	NA	100	NM_001190989	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.170000	0.751244	
mm_3262.1	chr1	136279881	136280081	+	1	NA	NA	NA	-19108	NM_001101516	383563	Mm.40367	NM_001101516	ENSMUSG00000052759	Gpr25	Gm1300	G protein-coupled receptor 25	protein-coding	0.015000	0.278607	
mm_107230.1	chr12	26478004	26478204	+	1	NA	NA	NA	8889	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.030000	0.532338	
mm_140769.1	chr17	17625180	17625380	-	1	NA	NA	NA	-791	NM_172827	240028	Mm.328807	NM_172827	ENSMUSG00000023845	Lnpep	2010309L07Rik|4732490P18Rik|CAP|IRAP|PLAP|gp160|vp165	leucyl/cystinyl aminopeptidase	protein-coding	0.075000	0.646766	
mm_13327.1	chr2	102783732	102783932	+	1	NA	NA	NA	77394	NM_001077515	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.000000	0.407960	
mm_55972.1	chr6	85832151	85832351	-	1	NA	NA	NA	-361	NM_023455	68396	Mm.154782	NM_023455	ENSMUSG00000030004	Nat8	0610037O16Rik|CCNAT|Cml4	N-acetyltransferase 8 (GCN5-related)	protein-coding	0.005000	0.572139	
mm_116486.1	chr13	44455215	44455415	-	1	NA	NA	NA	15588	NR_045489	69491	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.025000	0.507463	
mm_4649.1	chr1	180331520	180331720	+	1	NA	NA	NA	-1071	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.040000	0.631841	
mm_22881.1	chr3	29541794	29541994	+	1	NA	NA	NA	-94850	NR_105796	102466637		NR_105796	ENSMUSG00000098315	Mir21b	Gm27951|mmu-mir-21b	microRNA 21b	ncRNA	0.000000	0.447761	
mm_97472.1	chr11	78314968	78315168	+	1	NA	NA	NA	-8005	NM_001303423	11676	Mm.7729	NM_009657	ENSMUSG00000017390	Aldoc	AI847350|AU040929|Aldo3|Scrg2	aldolase C, fructose-bisphosphate	protein-coding	0.015000	0.527363	
mm_37989.1	chr4	133632029	133632229	-	1	NA	NA	NA	1300	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.015000	0.482587	
mm_433.1	chr1	34535542	34535742	+	1	NA	NA	NA	-6	NM_007685	12627	Mm.2531	NM_007685	ENSMUSG00000026124	Cfc1	AV265756|b2b970Clo|cryptic	cripto, FRL-1, cryptic family 1	protein-coding	0.000000	0.542289	
mm_66872.1	chr7	57509287	57509487	-	1	NA	NA	NA	622	NM_176942	110886	Mm.273114	NM_176942	ENSMUSG00000055078	Gabra5	A230018I05Rik	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5	protein-coding	0.120000	0.751244	
mm_58333.1	chr6	146634373	146634573	-	1	NA	NA	NA	119	NM_026281	67623	Mm.278037	NM_026281	ENSMUSG00000040234	Tm7sf3	2010003B14Rik|NARP1	transmembrane 7 superfamily member 3	protein-coding	0.165000	0.786070	
mm_23270.1	chr3	51559875	51560075	+	1	NA	NA	NA	218	NR_033624	100039684	Mm.387178	NR_033624		5031434O11Rik	AI481280|Gm2370	RIKEN cDNA 5031434O11 gene	ncRNA	0.060000	0.577114	
mm_117436.1	chr13	74725314	74725514	-	1	NA	NA	NA	8847	NM_001301158	12380	Mm.29163	NM_009817	ENSMUSG00000021585	Cast	-	calpastatin	protein-coding	0.005000	0.422886	
mm_48522.1	chr5	142903227	142903427	-	1	NA	NA	NA	3427	NM_007393	11461	Mm.328431	NM_007393	ENSMUSG00000029580	Actb	Actx|E430023M04Rik|beta-actin	actin, beta	protein-coding	0.020000	0.452736	
mm_118284.1	chr13	112762608	112762808	-	1	NA	NA	NA	-38069	NM_008903	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.020000	0.437811	
mm_150468.1	chr19	38458462	38458662	+	1	NA	NA	NA	62582	NM_175507	240660	Mm.262085	NM_175507	ENSMUSG00000044026	Slc35g1	AA590464|D330039I19Rik|Tmem20	solute carrier family 35, member G1	protein-coding	0.025000	0.522388	
mm_39810.1	chr5	30647867	30648067	+	1	NA	NA	NA	28	NM_175675	74919	Mm.247985	NM_175675	ENSMUSG00000029175	Slc35f6	4930471M23Rik|5730478O19Rik|ANT2BP|P40|Tango9	solute carrier family 35, member F6	protein-coding	0.060000	0.641791	
mm_80154.1	chr9	70932575	70932775	+	1	NA	NA	NA	2133	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.000000	0.263682	-78(CAGTTTTAAAGC,-,0.00),-5(TTTTTTAAAGAC,+,0.00)
mm_134921.1	chr16	30388685	30388885	-	1	NA	NA	NA	-255	NM_001128096	224088	Mm.8924	NM_001128094	ENSMUSG00000022533	Atp13a3	AU022875|Gm1745|Gm541|Gm542	ATPase type 13A3	protein-coding	0.150000	0.766169	
mm_55720.1	chr6	73469370	73469570	-	1	NA	NA	NA	197	NM_025737	66740	Mm.440760	NM_025737	ENSMUSG00000056197	4931417E11Rik	-	RIKEN cDNA 4931417E11 gene	protein-coding	0.025000	0.487562	
mm_114285.1	chr13	58402595	58402795	+	1	NA	NA	NA	98	NM_001168248	74386	Mm.85289	NM_028904	ENSMUSG00000035367	Rmi1	4932432N11Rik|C79893	RecQ mediated genome instability 1	protein-coding	0.120000	0.691542	
mm_106273.1	chr11	117988015	117988215	-	1	NA	NA	NA	1258	NM_133757	74451	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.020000	0.472637	
mm_39254.1	chr5	3521491	3521691	+	1	NA	NA	NA	-22242	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.000000	0.353234	-44(CCCTATATATAG,-,0.00)
mm_106841.1	chr12	8006863	8007063	+	1	NA	NA	NA	29286	NM_009693	238055	Mm.221239	NM_009693	ENSMUSG00000020609	Apob	AI315052|Apo B-100|apob-100|apob-48	apolipoprotein B	protein-coding	0.010000	0.393035	
mm_151340.1	chr19	55895306	55895506	+	1	NA	NA	NA	85	NM_001142924	21416	Mm.139815	NM_009333	ENSMUSG00000024985	Tcf7l2	TCF4B|TCF4E|Tcf-4|Tcf4	transcription factor 7 like 2, T cell specific, HMG box	protein-coding	0.055000	0.527363	
mm_37333.1	chr4	119656542	119656742	-	1	NA	NA	NA	2303	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.030000	0.522388	-55(CAGCATAAATGG,-,0.00)
mm_6970.1	chr1	86301260	86301460	-	1	NA	NA	NA	-1861	NM_145222	227327	Mm.86467	NM_145222	ENSMUSG00000079445	B3gnt7	C330001H22Rik|beta-3GnT7	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7	protein-coding	0.005000	0.507463	
mm_110867.1	chr12	73583815	73584015	-	1	NA	NA	NA	-881	NM_001313977	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.020000	0.502488	
mm_70817.1	chr8	23119334	23119534	+	1	NA	NA	NA	-19596	NM_001310436	11733	Mm.334444	NM_031158	ENSMUSG00000031543	Ank1	Ank-1|nb|pale	ankyrin 1, erythroid	protein-coding	0.025000	0.537313	
mm_163727.1	chr13	119597922	119598122	-	1	NA	NA	NA	-25797	NM_020279	56838	Mm.143745	NM_020279	ENSMUSG00000074715	Ccl28	CCK1|MEC|Scya28	chemokine (C-C motif) ligand 28	protein-coding	0.015000	0.487562	
mm_146316.1	chr18	80470065	80470265	+	1	NA	NA	NA	-498	NM_026295	67655	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.105000	0.621891	
mm_33857.1	chr4	135895290	135895490	+	1	NA	NA	NA	201	NM_009924	12802	Mm.297251	NM_009924	ENSMUSG00000062585	Cnr2	CB-2|CB2|CB2-R	cannabinoid receptor 2 (macrophage)	protein-coding	0.020000	0.537313	
mm_97385.1	chr11	77763204	77763404	+	1	NA	NA	NA	-13931	NM_001291213	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.175000	0.830846	
mm_161152.1	chr13	23622409	23622609	-	1	NA	NA	NA	49	NM_015787	50709	Mm.170587	NM_015787	ENSMUSG00000051627	Hist1h1e	H1-4|H1.4|H1e|H1f4|H1s-4|H1var2	histone cluster 1, H1e	protein-coding	0.130000	0.701493	-81(CCCTATATAAAC,-,0.00)
mm_2271.1	chr1	91250105	91250305	+	1	NA	NA	NA	-114	NM_026454	67921	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0.050000	0.522388	68(TTTTTTAAAGTG,+,0.00)
mm_22505.1	chr3	7442669	7442869	+	1	NA	NA	NA	-60657	NM_173181	67306	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	0.010000	0.407960	
mm_139585.1	chr17	57223102	57223302	+	1	NA	NA	NA	4934	NM_009778	12266	Mm.19131	NM_009778	ENSMUSG00000024164	C3	AI255234|ASP|HSE-MSF|Plp	complement component 3	protein-coding	0.030000	0.557214	
mm_16986.1	chr2	18048705	18048905	-	1	NA	NA	NA	-356	NM_028317	72668	Mm.102183	NM_028317	ENSMUSG00000054074	Skida1	2810030E01Rik|5730507N06Rik|BB088113	SKI/DACH domain containing 1	protein-coding	0.025000	0.432836	
mm_27046.1	chr3	27191880	27192080	-	1	NA	NA	NA	8976	NM_178772	320024	Mm.24576	NM_178772	ENSMUSG00000027698	Nceh1	Aadacl1|B230106I24Rik|CPO-BP|Nceh	neutral cholesterol ester hydrolase 1	protein-coding	0.015000	0.502488	
mm_87932.1	chr10	62651597	62651797	+	1	NA	NA	NA	-499	NM_053183	94213	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	0.085000	0.656716	
mm_167728.1	chr9	103217355	103217555	+	1	NA	NA	NA	12831	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.025000	0.487562	
mm_134786.1	chr16	23988533	23988733	-	1	NA	NA	NA	-21	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.075000	0.592040	
mm_171099.1	chr3	132677019	132677219	-	1	NA	NA	NA	6760	NM_007926	13722	Mm.235137	NM_007926	ENSMUSG00000028029	Aimp1	9830137A06Rik|AIMP1/p43|EMAPII|Emap2|Scye1|p43	aminoacyl tRNA synthetase complex-interacting multifunctional protein 1	protein-coding	0.030000	0.447761	
mm_5211.1	chr1	13589711	13589911	-	1	NA	NA	NA	99	NM_028173	72265	Mm.28765	NM_028173	ENSMUSG00000025935	Tram1	1810049E02Rik|TRAMP	translocating chain-associating membrane protein 1	protein-coding	0.120000	0.706468	
mm_137626.1	chr17	28328460	28328660	+	1	NA	NA	NA	89	NM_011287	19896	Mm.336955	NM_011287	ENSMUSG00000037805	Rpl10a	CsA-19|Nedd6	ribosomal protein L10A	protein-coding	0.130000	0.656716	
mm_19181.1	chr2	84390703	84390903	-	1	NA	NA	NA	34463	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.000000	0.358209	
mm_21104.1	chr2	153241399	153241599	-	1	NA	NA	NA	-33	NM_080463	140484	Mm.293761	NM_080463	ENSMUSG00000046020	Pofut1	O-FucT-1|mKIAA0180	protein O-fucosyltransferase 1	protein-coding	0.145000	0.796020	
mm_72223.1	chr8	72725511	72725711	+	1	NA	NA	NA	2341	NM_009188	20467	Mm.2137	NM_009188	ENSMUSG00000031622	Sin3b	2810430C10Rik	transcriptional regulator, SIN3B (yeast)	protein-coding	0.045000	0.532338	
mm_124193.1	chr14	98109960	98110160	-	1	NA	NA	NA	59705	NM_001038610	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund 1 (Drosophila)	protein-coding	0.010000	0.348259	
mm_148764.1	chr19	6061415	6061615	+	1	NA	NA	NA	308	NM_013859	29805	Mm.2310	NM_013859	ENSMUSG00000075227	Znhit2	C11orf5|Fon|ORF6|Znhit2-ps	zinc finger, HIT domain containing 2	protein-coding	0.150000	0.721393	
mm_5198.1	chr1	13373948	13374148	-	1	NA	NA	NA	35	NM_008678	17978	Mm.2537	NM_008678	ENSMUSG00000005886	Ncoa2	D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75	nuclear receptor coactivator 2	protein-coding	0.100000	0.671642	
mm_69242.1	chr7	127806876	127807076	-	1	NA	NA	NA	6367	NM_001040684	101502	Mm.157103	NM_133943	ENSMUSG00000042289	Hsd3b7	AI195443|BB098564	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7	protein-coding	0.015000	0.537313	
mm_158402.1	chrX	136837349	136837549	-	1	NA	NA	NA	14703	NM_001290562	18823	Mm.1268	NM_011123	ENSMUSG00000031425	Plp1	DM20|Plp|jimpy|jp|msd|rsh	proteolipid protein (myelin) 1	protein-coding	0.000000	0.308458	
mm_103015.1	chr11	69734756	69734956	-	1	NA	NA	NA	23777	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.005000	0.562189	
mm_44895.1	chr5	35105606	35105806	-	1	NA	NA	NA	-9	NM_013587	16976	Mm.277661	NM_013587	ENSMUSG00000029103	Lrpap1	AA617339|AI790446|AU042172|C77774|HBP44|RAP	low density lipoprotein receptor-related protein associated protein 1	protein-coding	0.065000	0.626866	
mm_148408.1	chr19	3907166	3907366	+	1	NA	NA	NA	-133	NM_001136091	27060	Mm.271689	NM_016921	ENSMUSG00000001750	Tcirg1	ATP6N1C|ATP6a3|Atp6i|OC-116|OPTB1|Stv1|TIRC7|Vph1|oc	T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3	protein-coding	0.070000	0.552239	
mm_162054.1	chrX	7766446	7766646	+	1	NA	NA	NA	2505	NM_001271491	209446	Mm.249142	NM_172472	ENSMUSG00000000134	Tfe3	F830016E06Rik|Tcfe3|Tfe-3|bHLHe33	transcription factor E3	protein-coding	0.025000	0.547264	
mm_7689.1	chr1	128614776	128614976	-	1	NA	NA	NA	-22577	NM_009911	12767	Mm.1401	NM_009911	ENSMUSG00000045382	Cxcr4	CD184|Cmkar4|LESTR|PB-CKR|PBSF/SDF-1|Sdf1r|b2b220Clo	chemokine (C-X-C motif) receptor 4	protein-coding	0.005000	0.517413	
mm_165082.1	chr19	46654840	46655040	-	1	NA	NA	NA	18060	NM_007809	13074	Mm.1262	NM_007809	ENSMUSG00000003555	Cyp17a1	Cyp17|p450c17	cytochrome P450, family 17, subfamily a, polypeptide 1	protein-coding	0.015000	0.572139	
mm_122159.1	chr14	31374650	31374850	-	1	NA	NA	NA	38026	NM_009796	12339	Mm.201535	NM_009796	ENSMUSG00000021893	Capn7	AU022319|PalBH	calpain 7	protein-coding	0.020000	0.532338	
mm_116083.1	chr13	28523068	28523268	-	1	NA	NA	NA	187705	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.005000	0.412935	40(GCCCCTATAAGC,-,0.00)
mm_4193.1	chr1	171225201	171225401	+	1	NA	NA	NA	247	NM_013474	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.020000	0.552239	
mm_8457.1	chr1	153185982	153186182	-	1	NA	NA	NA	365	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.080000	0.626866	
mm_50697.1	chr6	51598824	51599024	+	1	NA	NA	NA	54401	NM_001127348	71982	Mm.294166	NM_028035	ENSMUSG00000038301	Snx10	2410004M09Rik	sorting nexin 10	protein-coding	0.010000	0.437811	
mm_45610.1	chr5	75828385	75828585	-	1	NA	NA	NA	149943	NM_010612	16542	Mm.285	NM_010612	ENSMUSG00000062960	Kdr	6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|sVEGFR-2	kinase insert domain protein receptor	protein-coding	0.015000	0.482587	
mm_65646.1	chr7	28055066	28055266	-	1	NA	NA	NA	-5074	NM_011874	23996	Mm.29582	NM_011874	ENSMUSG00000030603	Psmc4	CIP21|MIP224	proteasome (prosome, macropain) 26S subunit, ATPase, 4	protein-coding	0.025000	0.497512	
mm_160670.1	chr9	123178178	123178378	-	1	NA	NA	NA	27332	NM_011606	21922	Mm.34588	NM_011606	ENSMUSG00000025784	Clec3b	Tna	C-type lectin domain family 3, member b	protein-coding	0.005000	0.447761	-82(CCTTATAGGTCC,+,0.00),-20(GCCTTTAGGGGA,+,0.00)
mm_93790.1	chr10	120686149	120686349	-	1	NA	NA	NA	-79483	NR_038000	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.030000	0.492537	
mm_105963.1	chr11	115463553	115463753	-	1	NA	NA	NA	1180	NM_001080934	217316	Mm.25773	NM_001080934	ENSMUSG00000045775	Slc16a5	A130015N09Rik|MCT 5|MCT 6|MCT5	solute carrier family 16 (monocarboxylic acid transporters), member 5	protein-coding	0.025000	0.547264	
mm_116606.1	chr13	48819587	48819787	-	1	NA	NA	NA	51198	NM_011078	18676	Mm.486213	NM_011078	ENSMUSG00000038025	Phf2	GRC5	PHD finger protein 2	protein-coding	0.010000	0.582090	
mm_72840.1	chr8	88294129	88294329	+	1	NA	NA	NA	25	NM_001037724	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.015000	0.532338	
mm_153690.1	chr19	44396950	44397150	-	1	NA	NA	NA	10659	NM_009127	20249	Mm.267377	NM_009127	ENSMUSG00000037071	Scd1	AA589638|AI265570|Scd|Scd-1|ab	stearoyl-Coenzyme A desaturase 1	protein-coding	0.005000	0.437811	
mm_98088.1	chr11	86587186	86587386	+	1	NA	NA	NA	-3128	NR_029738	387140		NR_029738	ENSMUSG00000065455	Mir21a	Mir21|Mirn21|mmu-mir-21|mmu-mir-21a	microRNA 21a	ncRNA	0.010000	0.472637	
mm_28574.1	chr3	93445257	93445457	-	1	NA	NA	NA	3027	NM_001163098	99681	Mm.316671	NM_001163098	ENSMUSG00000052415	Tchh	AHF|AI597080|Thh	trichohyalin	protein-coding	0.065000	0.582090	
mm_13475.1	chr2	105689483	105689683	+	1	NA	NA	NA	7120	NM_001310145	18508	Mm.3608	NM_013627	ENSMUSG00000027168	Pax6	1500038E17Rik|AEY11|Dey|Gsfaey11|Pax-6|Sey	paired box 6	protein-coding	0.045000	0.567164	
mm_131470.1	chr16	17045024	17045224	+	1	NA	NA	NA	-25015	NM_023249	106369	Mm.237941	NM_023249	ENSMUSG00000022773	Ypel1	0610009L05Rik|1700016N17Rik|1700019O22Rik|4921520K19Rik|4930511F14Rik|AV118478|DGL-1|Dgl1|Ppil2|mdgl-1	yippee-like 1 (Drosophila)	protein-coding	0.005000	0.328358	
mm_112103.1	chr12	112785389	112785589	-	1	NA	NA	NA	-23486	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.025000	0.517413	
mm_141479.1	chr17	31164949	31165149	-	1	NA	NA	NA	4	NM_009362	21784	Mm.2854	NM_009362	ENSMUSG00000024032	Tff1	Bcei|PS2	trefoil factor 1	protein-coding	0.035000	0.547264	
mm_77888.1	chr9	7344282	7344482	+	1	NA	NA	NA	-15	NM_001320077	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.407960	
mm_108249.1	chr12	78226575	78226775	+	1	NA	NA	NA	20	NM_145965	268566	Mm.341742	NM_145965	ENSMUSG00000047454	Gphn	5730552E08Rik|AI662856|BC027112|C230040D23|GPH|GPHRYN|geph	gephyrin	protein-coding	0.150000	0.786070	
mm_42135.1	chr5	111235263	111235463	+	1	NA	NA	NA	-95334	NM_001301644	56305	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0.040000	0.582090	
mm_129154.1	chr15	76231988	76232188	-	1	NA	NA	NA	-710	NM_011117	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.085000	0.681592	
mm_35505.1	chr4	41093332	41093532	-	1	NA	NA	NA	4751	NM_016689	11828	Mm.34043	NM_016689	ENSMUSG00000028435	Aqp3	AQP-2	aquaporin 3	protein-coding	0.015000	0.592040	
mm_15430.1	chr2	157134386	157134586	+	1	NA	NA	NA	736	NM_001139520	56045	Mm.248478	NM_018851	ENSMUSG00000027639	Samhd1	E330031J07Rik|Mg11	SAM domain and HD domain, 1	protein-coding	0.030000	0.517413	-79(TCCCCTTTAAGG,-,0.00),-77(CCCTTTAAGGAA,+,0.00)
mm_57207.1	chr6	122850996	122851196	-	1	NA	NA	NA	5061	NM_009779	12267	Mm.2408	NM_009779	ENSMUSG00000040552	C3ar1	AZ3B|C3AR|HNFAG09	complement component 3a receptor 1	protein-coding	0.020000	0.547264	
mm_66856.1	chr7	52015617	52015817	-	1	NA	NA	NA	-1	NM_001195601	100503036	Mm.279725	NM_001195601	ENSMUSG00000094445	1700015G11Rik	Ccdc179	RIKEN cDNA 1700015G11 gene	protein-coding	0.010000	0.527363	
mm_124351.1	chr14	104467913	104468113	-	1	NA	NA	NA	-14	NM_011143	18996	Mm.246550	NM_011143	ENSMUSG00000048349	Pou4f1	Brn-3|Brn-3.0|Brn3|Brn3.0|Brn3a|E130119J07Rik	POU domain, class 4, transcription factor 1	protein-coding	0.170000	0.776119	
mm_71828.1	chr8	68896596	68896796	+	1	NA	NA	NA	16141	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.025000	0.502488	
mm_126983.1	chr15	93804573	93804773	+	1	NA	NA	NA	122438	NR_045737	77248	Mm.410768	NR_045737		9430014N10Rik	-	RIKEN cDNA 9430014N10 gene	ncRNA	0.010000	0.432836	
mm_155791.1	chrX	98148651	98148851	+	1	NA	NA	NA	-6	NM_013476	11835	Mm.39005	NM_013476	ENSMUSG00000046532	Ar	AW320017|Tfm	androgen receptor	protein-coding	0.035000	0.641791	
mm_9453.1	chr1	172632700	172632900	-	1	NA	NA	NA	174	NM_026725	68440	Mm.33024	NM_026725	ENSMUSG00000026544	Dusp23	1300005N15Rik|LDP-3	dual specificity phosphatase 23	protein-coding	0.080000	0.686567	
mm_161668.1	chr17	13060985	13061185	+	1	NA	NA	NA	-26	NM_009341	21462	Mm.264651	NM_009341	ENSMUSG00000055602	Tcp10b	D17Leh66B|D17Leh66ba|T66B-a|Tcp-10b|Tcp-10bt	t-complex protein 10b	protein-coding	0.005000	0.427861	-9(GGCCCTTTAAGA,-,0.00),-6(CCTTTAAGACAG,+,0.00)
mm_23618.1	chr3	65666177	65666377	+	1	NA	NA	NA	49	NM_001166659	624866	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	0.110000	0.666667	
mm_92020.1	chr10	62379825	62380025	-	1	NA	NA	NA	-17	NM_010438	15275	Mm.196605	NM_010438	ENSMUSG00000037012	Hk1	BB404130|Hk-1|Hk1-s|dea|mHk1-s	hexokinase 1	protein-coding	0.000000	0.507463	
mm_108026.1	chr12	73713814	73714014	+	1	NA	NA	NA	129118	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.015000	0.358209	
mm_136911.1	chr17	13016870	13017070	+	1	NA	NA	NA	9131	NM_013671	20656	Mm.290876	NM_013671	ENSMUSG00000006818	Sod2	MnSOD|Sod-2	superoxide dismutase 2, mitochondrial	protein-coding	0.005000	0.422886	
mm_145760.1	chr18	64888812	64889012	+	1	NA	NA	NA	1156	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.050000	0.567164	-83(GTTTTTAAAAGC,+,0.00),-83(GTTTTTAAAAGC,-,0.00),-82(TTTTTAAAAGCC,+,0.00)
mm_74018.1	chr8	121544310	121544510	+	1	NA	NA	NA	22	NR_045903	72259	Mm.396206	NR_045903	ENSMUSG00000097424	1700030M09Rik	-	RIKEN cDNA 1700030M09 gene	ncRNA	0.035000	0.611940	
mm_37445.1	chr4	123349967	123350167	-	1	NA	NA	NA	-6815	NM_007558	12163	Mm.439749	NM_007558	ENSMUSG00000032726	Bmp8a	Bmp7r1|OP-2|OP2	bone morphogenetic protein 8a	protein-coding	0.010000	0.437811	
mm_129794.1	chr15	82852631	82852831	-	1	NA	NA	NA	45730	NR_027799	21378	Mm.417272	NR_027799		Tbrg3	TB-11	transforming growth factor beta regulated gene 3	ncRNA	0.000000	0.517413	
mm_122355.1	chr14	38998675	38998875	-	1	NA	NA	NA	100473	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA	0.005000	0.258706	-63(ACTTTTATGGTG,+,0.00)
mm_96968.1	chr11	70647790	70647990	+	1	NA	NA	NA	603	NM_027445	70510	Mm.261818	NM_027445	ENSMUSG00000040746	Rnf167	0610010G05Rik|5730408C10Rik|AU019305|AV328608	ring finger protein 167	protein-coding	0.075000	0.646766	
mm_95048.1	chr11	32296392	32296592	+	1	NA	NA	NA	0	NM_001083955	110257	Mm.196110	NM_001083955	ENSMUSG00000069917	Hba-a2	-	hemoglobin alpha, adult chain 2	protein-coding	0.010000	0.542289	
mm_104330.1	chr11	93995091	93995291	-	1	NA	NA	NA	-900	NM_001199203	70834	Mm.260737	NM_027569	ENSMUSG00000020859	Spag9	3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1	sperm associated antigen 9	protein-coding	0.035000	0.497512	
mm_140137.1	chr17	79653283	79653483	+	1	NA	NA	NA	38483	NM_201361	381110	Mm.209801	NM_201361	ENSMUSG00000036368	Rmdn2	AW061290|Fam82a1|RMD-2|mRMD-2	regulator of microtubule dynamics 2	protein-coding	0.005000	0.502488	
mm_13308.1	chr2	102658586	102658786	+	1	NA	NA	NA	3	NM_001077514	20511	Mm.267547	NM_011393	ENSMUSG00000005089	Slc1a2	1700091C19Rik|2900019G14Rik|AI159670|Eaat2|GLT-1|GLT1|MGLT1	solute carrier family 1 (glial high affinity glutamate transporter), member 2	protein-coding	0.060000	0.606965	
mm_82697.1	chr9	22389055	22389255	-	1	NA	NA	NA	51	NM_028390	68743	Mm.282751	NM_028390	ENSMUSG00000036777	Anln	1110037A17Rik|2900037I21Rik|C78101|Scraps	anillin, actin binding protein	protein-coding	0.120000	0.711443	
mm_56492.1	chr6	99203029	99203229	-	1	NA	NA	NA	63386	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.005000	0.398010	
mm_51762.1	chr6	87851107	87851307	+	1	NA	NA	NA	-101	NM_001347325	12785	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	0.120000	0.691542	
mm_3189.1	chr1	135799866	135800066	+	1	NA	NA	NA	455	NM_001112702	21952	Mm.44379	NM_021467	ENSMUSG00000026418	Tnni1	2700018B22Rik|AI747285|ssTnI	troponin I, skeletal, slow 1	protein-coding	0.015000	0.522388	
mm_108065.1	chr12	73940459	73940659	+	1	NA	NA	NA	-23971	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.010000	0.437811	
mm_95654.1	chr11	53752871	53753071	+	1	NA	NA	NA	10683	NR_106131	102465772		NR_106131	ENSMUSG00000099153	Mir7671	Gm27802|mmu-mir-7671	microRNA 7671	ncRNA	0.025000	0.447761	
mm_102238.1	chr11	54971853	54972053	-	1	NA	NA	NA	-9013	NM_001271455	57783	Mm.259671	NM_021327	ENSMUSG00000020400	Tnip1	ABIN|ABIN-1|ABIN1|AU018810|Naf1|Nef|VAN	TNFAIP3 interacting protein 1	protein-coding	0.030000	0.422886	-32(CTTTATATATCC,+,0.00)
mm_165844.1	chr4	3786114	3786314	+	1	NA	NA	NA	49441	NM_026147	67427	Mm.21938	NM_026147	ENSMUSG00000028234	Rps20	4632426K06Rik|Dsk4	ribosomal protein S20	protein-coding	0.005000	0.482587	
mm_125858.1	chr15	75155218	75155418	+	1	NA	NA	NA	57	NM_001310438	546644		NM_008531	ENSMUSG00000022582	Ly6g	Gr-1|Gr1|Ly-6G	lymphocyte antigen 6 complex, locus G	protein-coding	0.000000	0.512438	
mm_88442.1	chr10	77546048	77546248	+	1	NA	NA	NA	15800	NM_008404	16414	Mm.1137	NM_008404	ENSMUSG00000000290	Itgb2	2E6|AI528527|Cd18|LAD|LCAMB|Lfa1|MF17	integrin beta 2	protein-coding	0.040000	0.567164	
mm_140544.1	chr17	6827717	6827917	-	1	NA	NA	NA	-45037	NM_009510	22350	Mm.277812	NM_009510	ENSMUSG00000052397	Ezr	AW146364|R75297|Vil2|p81	ezrin	protein-coding	0.070000	0.601990	
mm_110580.1	chr12	56521293	56521493	-	1	NA	NA	NA	8027	NR_045082	104798	Mm.310950	NR_045082		E030019B13Rik	AI413669	RIKEN cDNA E030019B13 gene	ncRNA	0.035000	0.537313	13(CCTTTTAAATAC,+,0.00)
mm_103434.1	chr11	75847599	75847799	-	1	NA	NA	NA	-51639	NM_007873	13447	Mm.5137	NM_007873	ENSMUSG00000020848	Doc2b	-	double C2, beta	protein-coding	0.015000	0.527363	
mm_108047.1	chr12	73908065	73908265	+	1	NA	NA	NA	298	NM_001313919	15251	Mm.3879	NM_010431	ENSMUSG00000021109	Hif1a	AA959795|HIF-1-alpha|HIF1-alpha|HIF1alpha|MOP1|bHLHe78	hypoxia inducible factor 1, alpha subunit	protein-coding	0.130000	0.741294	
mm_66437.1	chr7	44815573	44815773	-	1	NA	NA	NA	-15	NM_030693	107503	Mm.389890	NM_030693	ENSMUSG00000038539	Atf5	AFTA|Atf7|Atfx|ODA-10	activating transcription factor 5	protein-coding	0.025000	0.537313	
mm_161824.1	chr17	74323769	74323969	-	1	NA	NA	NA	75	NM_024428	66310	Mm.28536	NM_024428	ENSMUSG00000024067	Dpy30	2810410M20Rik|C87842	dpy-30, histone methyltransferase complex regulatory subunit	protein-coding	0.005000	0.353234	-14(CCCTTTCTAGTC,+,0.00)
mm_66954.1	chr7	62416083	62416283	-	1	NA	NA	NA	3956	NM_011746	22652	Mm.146	NM_011746	ENSMUSG00000070527	Mkrn3	D7H15S9-1|Zfp127	makorin, ring finger protein, 3	protein-coding	0.000000	0.368159	-86(GCACTTTTAAGG,-,0.00),-84(ACTTTTAAGGAC,+,0.00)
mm_21392.1	chr2	157561897	157562097	-	1	NA	NA	NA	1919	NM_180960	18111	Mm.34330	NM_010923	ENSMUSG00000067786	Nnat	5730414I02Rik|AW107673|Peg5	neuronatin	protein-coding	0.035000	0.532338	
mm_115953.1	chr13	23752103	23752303	-	1	NA	NA	NA	-177	NM_178203	319150		NM_178203	ENSMUSG00000069267	Hist1h3b	H3-53	histone cluster 1, H3b	protein-coding	0.025000	0.417910	
mm_141691.1	chr17	33974943	33975143	-	1	NA	NA	NA	3748	NR_004446	630499	Mm.440940	NM_001081015		H2-K2	EG630499|Gm7035|H-2K1|H-2K1K|H-2K2|H2-K1	histocompatibility 2, K region locus 2	pseudo	0.005000	0.477612	
mm_28266.1	chr3	88744962	88745162	-	1	NA	NA	NA	27537	NM_018804	229521	Mm.379376	NM_018804	ENSMUSG00000068923	Syt11	1500004A13Rik|3632445O20Rik|5430404N14Rik|6530420C11Rik|AI851970	synaptotagmin XI	protein-coding	0.005000	0.472637	
mm_113989.1	chr13	52582716	52582916	+	1	NA	NA	NA	-621	NM_001198977	20963	Mm.375031	NM_011518	ENSMUSG00000021457	Syk	Sykb	spleen tyrosine kinase	protein-coding	0.040000	0.517413	
mm_140927.1	chr17	24223891	24224091	-	1	NA	NA	NA	-3222	NM_028056	72016	Mm.23881	NM_028056	ENSMUSG00000024118	1600002H07Rik	-	RIKEN cDNA 1600002H07 gene	protein-coding	0.025000	0.562189	
mm_7574.1	chr1	124845925	124846125	-	1	NA	NA	NA	589702	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.020000	0.442786	
mm_149811.1	chr19	23893394	23893594	+	1	NA	NA	NA	134618	NM_177034	319924	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.175000	0.746269	
mm_30908.1	chr4	32424664	32424864	+	1	NA	NA	NA	7329	NM_001109661	12014	Mm.491223	NM_007521	ENSMUSG00000040270	Bach2	E030004N02Rik	BTB and CNC homology, basic leucine zipper transcription factor 2	protein-coding	0.015000	0.462687	
mm_58833.1	chr7	16793436	16793636	+	1	NA	NA	NA	12190	NM_009201	20514	Mm.1056	NM_009201	ENSMUSG00000001918	Slc1a5	AAAT|ASCT2|ATBO|M7V1|M7VS1|R16|RDRC|Slc1a7	solute carrier family 1 (neutral amino acid transporter), member 5	protein-coding	0.035000	0.512438	
mm_53140.1	chr6	125221733	125221933	+	1	NA	NA	NA	6252	NM_001080557	22317	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	0.010000	0.517413	
mm_158644.1	chrX	155338366	155338566	-	1	NA	NA	NA	-6	NM_001313711	53381	Mm.247542	NM_016764	ENSMUSG00000025289	Prdx4	AOE372|Prx-iv|Prx4|TRANK	peroxiredoxin 4	protein-coding	0.110000	0.691542	
mm_161115.1	chr12	105147177	105147377	+	1	NA	NA	NA	244	NM_013775	27381	Mm.103653	NM_013775	ENSMUSG00000060863	Tcl1b2	-	T cell leukemia/lymphoma 1B, 2	protein-coding	0.010000	0.432836	
mm_138176.1	chr17	34264847	34265047	+	1	NA	NA	NA	1720	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.135000	0.711443	
mm_171173.1	chr3	32773025	32773225	+	1	NA	NA	NA	36062	NM_025316	66046	Mm.28058	NM_025316	ENSMUSG00000027673	Ndufb5	0610007D05Rik|AU015782|CI-SGDH|SGDH	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5	protein-coding	0.050000	0.537313	-29(CTCCATAAAAGG,-,0.00)
mm_34523.1	chr4	149104116	149104316	+	1	NA	NA	NA	74	NM_001025296	13347	Mm.41433	NM_010044	ENSMUSG00000028974	Dffa	A330085O09Rik|DFF35|Dff45|ICAD|ICAD-L|ICAD-S	DNA fragmentation factor, alpha subunit	protein-coding	0.065000	0.616915	
mm_22302.1	chr2	180334845	180335045	-	1	NA	NA	NA	-266	NM_008093	14464	Mm.388880	NM_008093	ENSMUSG00000015627	Gata5	-	GATA binding protein 5	protein-coding	0.070000	0.631841	
mm_110424.1	chr12	46818669	46818869	-	1	NA	NA	NA	6	NM_021361	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.055000	0.472637	
mm_31184.1	chr4	43519341	43519541	+	1	NA	NA	NA	4113	NM_009416	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.025000	0.547264	
mm_75653.1	chr8	65129374	65129574	-	1	NA	NA	NA	63	NR_033217	407795	Mm.387876	NR_033217	ENSMUSG00000074300	BC030870	-	cDNA sequence BC030870	ncRNA	0.020000	0.427861	
mm_146069.1	chr18	70472528	70472728	+	1	NA	NA	NA	0	NM_001289649	170461	Mm.83623	NM_029019	ENSMUSG00000079608	Stard6	1700011K09Rik|4833424I06Rik|4933429L05Rik|AI644424	StAR-related lipid transfer (START) domain containing 6	protein-coding	0.060000	0.611940	
mm_120802.1	chr14	74797590	74797790	+	1	NA	NA	NA	65393	NM_016903	13885	Mm.38055	NM_016903	ENSMUSG00000021996	Esd	Es-10|Es10|FGH|sid478	esterase D/formylglutathione hydrolase	protein-coding	0.025000	0.512438	
mm_138127.1	chr17	34186947	34187147	+	1	NA	NA	NA	283	NM_013585	16912	Mm.390983	NM_013585	ENSMUSG00000096727	Psmb9	Lmp-2|Lmp2	proteasome (prosome, macropain) subunit, beta type 9 (large multifunctional peptidase 2)	protein-coding	0.045000	0.552239	
mm_44957.1	chr5	36696555	36696755	-	1	NA	NA	NA	-634	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.015000	0.522388	
mm_47355.1	chr5	122771305	122771505	-	1	NA	NA	NA	8005	NM_001199676	207565	Mm.289237	NM_145358	ENSMUSG00000029471	Camkk2	6330570N16Rik|AW061083|mKIAA0787	calcium/calmodulin-dependent protein kinase kinase 2, beta	protein-coding	0.030000	0.472637	
mm_152562.1	chr19	11586644	11586844	-	1	NA	NA	NA	18060	NM_026835	68774	Mm.290390	NM_026835	ENSMUSG00000024679	Ms4a6d	1110058E16Rik|AI447446|Ms4a11	membrane-spanning 4-domains, subfamily A, member 6D	protein-coding	0.005000	0.417910	
mm_125650.1	chr15	62740965	62741165	+	1	NA	NA	NA	-521614	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.010000	0.368159	
mm_41142.1	chr5	87887428	87887628	+	1	NA	NA	NA	1833	NM_027128	69592	Mm.389652	NM_027128	ENSMUSG00000009580	Odam	2310011G06Rik|APIN	odontogenic, ameloblast asssociated	protein-coding	0.000000	0.492537	
mm_146167.1	chr18	75245753	75245953	+	1	NA	NA	NA	51464	NR_045394	100503117	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.015000	0.353234	
mm_37252.1	chr4	118291215	118291415	-	1	NA	NA	NA	82	NM_011213	19268	Mm.29855	NM_011213	ENSMUSG00000033295	Ptprf	AA591035|LAR|LARS|RPTP-LAR	protein tyrosine phosphatase, receptor type, F	protein-coding	0.195000	0.835821	
mm_96584.1	chr11	69088434	69088634	+	1	NA	NA	NA	6	NM_009497	22318	Mm.28643	NM_009497	ENSMUSG00000020894	Vamp2	Syb-2|Syb2|sybII	vesicle-associated membrane protein 2	protein-coding	0.155000	0.756219	
mm_74099.1	chr8	122613811	122614011	+	1	NA	NA	NA	2285	NM_021502	59005	Mm.38746	NM_021502	ENSMUSG00000015013	Trappc2l	1810017G16Rik|AB030200|Hspc176|Tca17	trafficking protein particle complex 2-like	protein-coding	0.035000	0.492537	
mm_128997.1	chr15	74841660	74841860	-	1	NA	NA	NA	-117	NM_001033229	110115	Mm.322606	NM_001033229	ENSMUSG00000075604	Cyp11b1	AA389061|CPN1|Cyp11b|Cyp11b-1|FHI	cytochrome P450, family 11, subfamily b, polypeptide 1	protein-coding	0.005000	0.522388	
mm_117419.1	chr13	74337334	74337534	-	1	NA	NA	NA	12806	NM_023281	66945	Mm.158231	NM_023281	ENSMUSG00000021577	Sdha	1500032O14Rik|2310034D06Rik|4921513A11|C81073|FP|SDH2|SDHF	succinate dehydrogenase complex, subunit A, flavoprotein (Fp)	protein-coding	0.015000	0.393035	
mm_24964.1	chr3	96699203	96699403	+	1	NA	NA	NA	2227	NM_018812	229615	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	0.025000	0.562189	
mm_22116.1	chr2	170142576	170142776	-	1	NA	NA	NA	-1	NM_001159683	228913	Mm.22858	NM_001033299	ENSMUSG00000052056	Zfp217	4933431C08Rik|AW987152|Gm562|ZABC1|Znf217	zinc finger protein 217	protein-coding	0.030000	0.527363	-34(TGGTATTTAAGG,-,0.00)
mm_45187.1	chr5	52115681	52115881	-	1	NA	NA	NA	20236	NR_105845	102466648		NR_105845	ENSMUSG00000098726	Mir6417	Gm27334|mmu-mir-6417	microRNA 6417	ncRNA	0.190000	0.761194	
mm_19373.1	chr2	91183900	91184100	-	1	NA	NA	NA	-953	NM_145527	228355	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0.010000	0.517413	
mm_15053.1	chr2	152904909	152905109	+	1	NA	NA	NA	-6343	NM_001081044	228785	Mm.250604	NM_001081044	ENSMUSG00000027470	Mylk2	9830004H17Rik|BB138278	myosin, light polypeptide kinase 2, skeletal muscle	protein-coding	0.015000	0.582090	-36(GCCCTTTAAAAG,-,0.00),-35(CCCTTTAAAAGG,+,0.00),-35(CCCTTTAAAAGG,-,0.00),-34(CCTTTAAAAGGG,+,0.00),-14(GCCCTTTTAAAC,-,0.00),-12(CCTTTTAAACCT,+,0.00)
mm_65179.1	chr7	19696211	19696411	-	1	NA	NA	NA	2087	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.005000	0.497512	
mm_159958.1	chr6	87981426	87981626	-	1	NA	NA	NA	-44	NM_198622	243529	Mm.33796	NM_198622	ENSMUSG00000044927	H1fx	Gm461|H1.10|H1X	H1 histone family, member X	protein-coding	0.155000	0.855721	
mm_171534.1	chr4	146806044	146806244	-	1	NA	NA	NA	-215706	NM_001177767	100043034	Mm.422606	NM_001177767	ENSMUSG00000067919	Rex2	Gm13138|OTTMUSG00000010655	reduced expression 2	protein-coding	0.045000	0.517413	-26(GTGTATATAAGC,-,0.00)
mm_57137.1	chr6	122609761	122609961	-	1	NA	NA	NA	226	NM_008108	14562	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0.050000	0.562189	
mm_46639.1	chr5	108532315	108532515	-	1	NA	NA	NA	17612	NM_007756	12889	Mm.5195	NM_007756	ENSMUSG00000033615	Cplx1	921-S	complexin 1	protein-coding	0.005000	0.378109	
mm_118771.1	chr14	22722312	22722512	+	1	NA	NA	NA	-179614	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.005000	0.313433	58(CCCTTTTAAAAA,-,0.00),59(CCTTTTAAAAAC,+,0.00)
mm_155919.1	chrX	102050745	102050945	+	1	NA	NA	NA	20462	NM_001278534	331474	Mm.23297	NM_183318	ENSMUSG00000049191	Rgag4	6430402L03Rik|Mar5|Mart5|mKIAA2001	retrotransposon gag domain containing 4	protein-coding	0.020000	0.512438	
mm_55556.1	chr6	71271397	71271597	-	1	NA	NA	NA	-174	NR_106192	102465900		NR_106192	ENSMUSG00000098623	Mir8112	Gm27739|mmu-mir-8112	microRNA 8112	ncRNA	0.085000	0.631841	
mm_17761.1	chr2	32784335	32784535	-	1	NA	NA	NA	-30	NM_025619	227736	Mm.441499	NM_025619	ENSMUSG00000038987	Cfap157	1700019L03Rik	cilia and flagella associated protein 157	protein-coding	0.005000	0.487562	-54(GCCCTTTAAAAC,-,0.00),-53(CCCTTTAAAACC,+,0.00),-52(CCTTTAAAACCC,+,0.00),8(GCTTCTTAAAGG,-,0.00),9(CTTCTTAAAGGG,+,0.00),21(GACTTTAAAAAG,-,0.00),23(CTTTAAAAAGTG,+,0.00)
mm_106631.1	chr11	120882833	120883033	-	1	NA	NA	NA	49939	NM_027745	71276	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.000000	0.363184	
mm_114838.1	chr13	92575683	92575883	+	1	NA	NA	NA	449	NM_030237	79401	Mm.23520	NM_030237	ENSMUSG00000046957	Spz1	1700027M20Rik|AI429130	spermatogenic leucine zipper 1	protein-coding	0.015000	0.462687	-41(GTCTTTTAAGAG,-,0.00)
mm_15135.1	chr2	153943849	153944049	+	1	NA	NA	NA	3087	NM_001034875	381399	Mm.315572	NM_001034875	ENSMUSG00000074665	Bpifb4	Gm1006|Lplunc4	BPI fold containing family B, member 4	protein-coding	0.040000	0.587065	
mm_167583.1	chr9	45945695	45945895	-	1	NA	NA	NA	-6205	NR_106055	102465659		NR_106055	ENSMUSG00000098327	Mir7087	Gm27273|mmu-mir-7087	microRNA 7087	ncRNA	0.040000	0.552239	
mm_31538.1	chr4	55464507	55464707	+	1	NA	NA	NA	-45765	NR_040674	100415914	Mm.261765	NR_040674	ENSMUSG00000087070	Gm12505	OTTMUSG00000007226	predicted gene 12505	ncRNA	0.010000	0.437811	
mm_39695.1	chr5	27057743	27057943	+	1	NA	NA	NA	8644	NM_207282	13483	Mm.42078	NM_010075	ENSMUSG00000061576	Dpp6	B930011P16Rik|D5Buc3|D5Buc4|D5Buc5|DPP VI|Dpp-6|Gm1377|In(5)6H-p|Peplb|Rw	dipeptidylpeptidase 6	protein-coding	0.000000	0.298507	
mm_152104.1	chr19	6925248	6925448	-	1	NA	NA	NA	32	NM_001039494	67077	Mm.251306	NM_001039494	ENSMUSG00000050623	Tex40	1700019N12Rik|A430107B04Rik|MLZ-622	testis expressed 40	protein-coding	0.050000	0.577114	
mm_92696.1	chr10	80676193	80676393	-	1	NA	NA	NA	0	NM_021462	17347	Mm.42126	NM_021462	ENSMUSG00000020190	Mknk2	2010016G11Rik|Gprk7|Mnk2	MAP kinase-interacting serine/threonine kinase 2	protein-coding	0.175000	0.786070	-35(GCGCCTATAAAG,-,0.00),-33(GCCTATAAAGGT,+,0.00),-33(GCCTATAAAGGT,-,0.00)
mm_82554.1	chr9	20976635	20976835	-	1	NA	NA	NA	58	NM_010333	14739	Mm.46493	NM_010333	ENSMUSG00000043895	S1pr2	1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2	sphingosine-1-phosphate receptor 2	protein-coding	0.065000	0.651741	
mm_93057.1	chr10	88684932	88685132	-	1	NA	NA	NA	-2009	NM_011461	20728	Mm.21642	NM_011461	ENSMUSG00000004359	Spic	AU019198|C76795|Prf|Spi-C	Spi-C transcription factor (Spi-1/PU.1 related)	protein-coding	0.010000	0.482587	
mm_27317.1	chr3	50366782	50366982	-	1	NA	NA	NA	76731	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.338308	-86(CCCTTAATAACC,+,0.00)
mm_53403.1	chr6	131380813	131381013	+	1	NA	NA	NA	7537	NM_139117	56449	Mm.458000	NM_011733	ENSMUSG00000030189	Ybx3	Csda|Dpba|MSY3|MSY4|Yb2|dbpA|oxyR	Y box protein 3	protein-coding	0.015000	0.422886	
mm_168223.1	chr10	79435366	79435566	+	1	NA	NA	NA	-33492	NM_001104537	625029	Mm.469865	NM_001104537	ENSMUSG00000091381	Vmn2r83	EG625029	vomeronasal 2, receptor 83	protein-coding	0.050000	0.582090	
mm_120814.1	chr14	75131176	75131376	+	1	NA	NA	NA	153	NM_001247984	18826	Mm.153911	NM_008879	ENSMUSG00000021998	Lcp1	AW536232|D14Ertd310e|LCP-1|Pls2|pp65	lymphocyte cytosolic protein 1	protein-coding	0.035000	0.467662	
mm_71436.1	chr8	46506994	46507194	+	1	NA	NA	NA	16128	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.020000	0.373134	
mm_148641.1	chr19	5479992	5480192	+	1	NA	NA	NA	5357	NM_001164352	58859	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	0.035000	0.616915	
mm_35777.1	chr4	46404033	46404233	-	1	NA	NA	NA	50	NM_053149	93966	Mm.25793	NM_053149	ENSMUSG00000028332	Hemgn	4921524M03Rik|AI317176|EDAG|Hgn|mNDR	hemogen	protein-coding	0.005000	0.417910	86(GCTTTTAGGCTG,+,0.00)
mm_148455.1	chr19	4003212	4003412	+	1	NA	NA	NA	-73	NM_021791	60425	Mm.266972	NM_021791	ENSMUSG00000024871	Doc2g	D830013O18Rik	double C2, gamma	protein-coding	0.000000	0.557214	
mm_154504.1	chrM	11859	12059	-	1	NA	NA	NA	NA	NA									0.000000	0.298507	
mm_125656.1	chr15	63611359	63611559	+	1	NA	NA	NA	-131851	NR_045279	432958	Mm.255105	NR_045279		Gm20740	-	predicted gene, 20740	ncRNA	0.010000	0.452736	
mm_158647.1	chrX	155340671	155340871	-	1	NA	NA	NA	-2311	NM_001313711	53381	Mm.247542	NM_016764	ENSMUSG00000025289	Prdx4	AOE372|Prx-iv|Prx4|TRANK	peroxiredoxin 4	protein-coding	0.000000	0.517413	
mm_124306.1	chr14	103098918	103099118	-	1	NA	NA	NA	-14	NM_001347601	50789	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.200000	0.835821	
mm_105287.1	chr11	102447504	102447704	-	1	NA	NA	NA	59	NM_199200	217219	Mm.259924	NM_199200	ENSMUSG00000034685	Fam171a2	-	family with sequence similarity 171, member A2	protein-coding	0.150000	0.781095	
mm_82642.1	chr9	22015170	22015370	-	1	NA	NA	NA	12282	NM_008925	19089	Mm.214593	NM_008925	ENSMUSG00000003402	Prkcsh	80K-H|PKCSH	protein kinase C substrate 80K-H	protein-coding	0.000000	0.527363	
mm_148456.1	chr19	4003250	4003450	+	1	NA	NA	NA	-35	NM_021791	60425	Mm.266972	NM_021791	ENSMUSG00000024871	Doc2g	D830013O18Rik	double C2, gamma	protein-coding	0.000000	0.601990	
mm_105917.1	chr11	115001513	115001713	-	1	NA	NA	NA	267	NM_134158	140497	Mm.2699	NM_134158	ENSMUSG00000044811	Cd300c2	CLM4|Cd300c|Cd300d|DIgR1|Igsf7|Lmir2|MAIR-II	CD300C molecule 2	protein-coding	0.015000	0.507463	
mm_154218.1	chr19	59345700	59345900	-	1	NA	NA	NA	-20	NM_001033222	107368	Mm.27250	NM_001033222	ENSMUSG00000074746	Pdzd8	A630041P07Rik|AV329468|AW228944|Pdzk8	PDZ domain containing 8	protein-coding	0.175000	0.800995	
mm_42809.1	chr5	121797619	121797819	+	1	NA	NA	NA	21554	NR_105998	102465624		NR_105998	ENSMUSG00000099063	Mir7031	Gm27859|mmu-mir-7031	microRNA 7031	ncRNA	0.005000	0.398010	5(GCCTTTATACCC,+,0.00)
mm_72070.1	chr8	71523424	71523624	+	1	NA	NA	NA	-11755	NM_032398	84094	Mm.260768	NM_032398	ENSMUSG00000034845	Plvap	MECA32|Pv1	plasmalemma vesicle associated protein	protein-coding	0.030000	0.432836	
mm_172339.1	chr7	110501031	110501231	-	1	NA	NA	NA	113789	NM_177324	319934	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.005000	0.368159	
mm_41155.1	chr5	87929759	87929959	+	1	NA	NA	NA	4226	NM_007786	12994	Mm.296303	NM_007786	ENSMUSG00000001622	Csn3	AW208918|CSN10|Csnk	casein kappa	protein-coding	0.010000	0.477612	
mm_58323.1	chr6	146501950	146502150	-	1	NA	NA	NA	173	NM_010586	16439	Mm.7800	NM_010586	ENSMUSG00000030287	Itpr2	AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5|insP3R2	inositol 1,4,5-triphosphate receptor 2	protein-coding	0.095000	0.701493	
mm_43367.1	chr5	135404832	135405032	+	1	NA	NA	NA	-10386	NM_148932	107939	Mm.28399	NM_148932	ENSMUSG00000053293	Pom121	2610027A18Rik|C80273|mKIAA0618	nuclear pore membrane protein 121	protein-coding	0.040000	0.477612	
mm_164501.1	chr16	91633744	91633944	+	1	NA	NA	NA	13128	NM_010256	14450	Mm.4505	NM_010256	ENSMUSG00000022962	Gart	Gaps|Prgs	phosphoribosylglycinamide formyltransferase	protein-coding	0.040000	0.537313	
mm_10071.1	chr1	194651744	194651944	-	1	NA	NA	NA	32015	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	0.000000	0.482587	
mm_141763.1	chr17	34269276	34269476	-	1	NA	NA	NA	6149	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.015000	0.442786	
mm_133700.1	chr16	92946736	92946936	+	1	NA	NA	NA	-120762	NM_001111022	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.010000	0.537313	
mm_168074.1	chr10	111492817	111493017	+	1	NA	NA	NA	-7871	NR_033603	382421	Mm.245643	NR_033603		Gm5176	EG382421	high mobility group box 2 pseudogene	pseudo	0.010000	0.393035	-83(CTTTTTAGAGTT,+,0.00)
mm_70466.1	chr8	11952507	11952707	+	1	NA	NA	NA	112086	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	0.005000	0.487562	
mm_166391.1	chr5	134915296	134915496	-	1	NA	NA	NA	134	NM_020504	57255	Mm.86652	NM_020504	ENSMUSG00000008843	Cldn13	2500004B14Rik	claudin 13	protein-coding	0.030000	0.522388	
mm_121490.1	chr14	121248631	121248831	+	1	NA	NA	NA	130499	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.010000	0.358209	
mm_103409.1	chr11	75451018	75451218	-	1	NA	NA	NA	3599	NM_138950	192652	Mm.340378	NM_138950	ENSMUSG00000045374	Wdr81	BC054822|Gm883|mFLJ00182|nur5	WD repeat domain 81	protein-coding	0.045000	0.641791	
mm_44667.1	chr5	29378227	29378427	-	1	NA	NA	NA	63	NM_020295	56873	Mm.41572	NM_020295	ENSMUSG00000010721	Lmbr1	1110048D14Rik|AU017641	limb region 1	protein-coding	0.105000	0.666667	
mm_147110.1	chr18	35708297	35708497	-	1	NA	NA	NA	-5253	NM_029669	76594	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	0.020000	0.422886	
mm_34625.1	chr4	150569164	150569364	+	1	NA	NA	NA	82910	NM_173774	242773	Mm.29280	NM_173774	ENSMUSG00000039838	Slc45a1	C230078B22|Dnb5	solute carrier family 45, member 1	protein-coding	0.080000	0.691542	
mm_40573.1	chr5	63815630	63815830	+	1	NA	NA	NA	3235	NM_029554	76261	Mm.38143	NM_029554	ENSMUSG00000060512	0610040J01Rik	AI662686	RIKEN cDNA 0610040J01 gene	protein-coding	0.000000	0.358209	
mm_15510.1	chr2	158258129	158258329	+	1	NA	NA	NA	-12	NM_177850	329547	Mm.260883	NM_177850	ENSMUSG00000052922	Bpi	9230105K17Rik|Bpifd1	bactericidal permeablility increasing protein	protein-coding	0.035000	0.616915	
mm_49135.1	chr6	8948857	8949057	+	1	NA	NA	NA	-1062	NM_008751	18231	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.055000	0.601990	
mm_113780.1	chr13	45403389	45403589	+	1	NA	NA	NA	13747	NM_153789	218203	Mm.212855	NM_153789	ENSMUSG00000038175	Mylip	9430057C20Rik|Mir	myosin regulatory light chain interacting protein	protein-coding	0.010000	0.378109	
mm_151687.1	chr19	4306192	4306392	-	1	NA	NA	NA	-70	NM_001290818	110355	Mm.254144	NM_130863	ENSMUSG00000024858	Grk2	Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1	G protein-coupled receptor kinase 2	protein-coding	0.185000	0.855721	
mm_118554.1	chr14	17727299	17727499	+	1	NA	NA	NA	66439	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.000000	0.308458	
mm_145795.1	chr18	65247022	65247222	+	1	NA	NA	NA	-1739	NR_029600	387231		NR_029600	ENSMUSG00000065402	Mir122	Mir122a|Mirn122a|mir-122|mmu-mir-122	microRNA 122	ncRNA	0.025000	0.542289	
mm_55112.1	chr6	50384383	50384583	-	1	NA	NA	NA	-1646	NM_027881	71720	Mm.44153	NM_027881	ENSMUSG00000029822	Osbpl3	1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3	oxysterol binding protein-like 3	protein-coding	0.015000	0.532338	
mm_11074.1	chr2	27677165	27677365	+	1	NA	NA	NA	64	NM_011305	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.210000	0.830846	
mm_42942.1	chr5	122989653	122989853	+	1	NA	NA	NA	399	NR_045820	109202	Mm.30769	NM_175405	ENSMUSG00000056735	A930024E05Rik	-	RIKEN cDNA A930024E05 gene	ncRNA	0.010000	0.457711	65(ACTTTTAAACTC,+,0.00)
mm_30046.1	chr3	135840171	135840371	-	1	NA	NA	NA	-2	NR_040540	71038	Mm.410798	NR_040540	ENSMUSG00000106306	4933401H06Rik	-	RIKEN cDNA 4933401H06 gene	ncRNA	0.045000	0.472637	
mm_31296.1	chr4	45972585	45972785	+	1	NA	NA	NA	388	NM_146142	100121	Mm.275413	NM_146142	ENSMUSG00000035517	Tdrd7	5730495N10Rik|AI447470|PCTAIRE2BP	tudor domain containing 7	protein-coding	0.115000	0.751244	
mm_4711.1	chr1	180942340	180942540	+	1	NA	NA	NA	-78	NM_144794	208795	Mm.185518	NM_144794	ENSMUSG00000026519	Tmem63a	BC014795|Tmem64a	transmembrane protein 63a	protein-coding	0.100000	0.631841	
mm_62437.1	chr7	101373115	101373315	+	1	NA	NA	NA	-4907	NM_001040112	69710	Mm.277687	NM_027180	ENSMUSG00000032812	Arap1	2410002L19Rik|Centd2|mKIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	protein-coding	0.085000	0.696517	
mm_122132.1	chr14	31160533	31160733	-	1	NA	NA	NA	8008	NM_138672	192187	Mm.220821	NM_138672	ENSMUSG00000042286	Stab1	FEEL-1|FELE-1|MFEEL-1|MS-1|STAB-1|mKIAA0246	stabilin 1	protein-coding	0.040000	0.621891	
mm_151874.1	chr19	5798261	5798461	-	1	NA	NA	NA	-2380	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.005000	0.323383	
mm_72500.1	chr8	83740469	83740669	+	1	NA	NA	NA	742	NM_001163029	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.015000	0.402985	
mm_134092.1	chr16	9570891	9571091	-	1	NA	NA	NA	421542	NM_008170	14811	Mm.2953	NM_008170	ENSMUSG00000059003	Grin2a	GluN2A|NMDAR2A|NR2A	glutamate receptor, ionotropic, NMDA2A (epsilon 1)	protein-coding	0.005000	0.393035	
mm_9726.1	chr1	180195844	180196044	-	1	NA	NA	NA	76	NM_023341	67426	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0.130000	0.701493	
mm_73542.1	chr8	108714908	108715108	+	1	NA	NA	NA	364	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.135000	0.751244	
mm_66017.1	chr7	30598806	30599006	-	1	NA	NA	NA	-5964	NM_021397	58206	Mm.116789	NM_021397	ENSMUSG00000006310	Zbtb32	4930524C15Rik|FAXF|FAZF|PLZP|Rog|Tzfp	zinc finger and BTB domain containing 32	protein-coding	0.035000	0.582090	
mm_140689.1	chr17	13741454	13741654	-	1	NA	NA	NA	-18987	NM_010806	17356	Mm.59167	NM_010806	ENSMUSG00000068036	Afdn	5033403D15Rik|AF6|Af-6|Afadin|Gm314|I-afadin|Mllt4|S-afadin	afadin, adherens junction formation factor	protein-coding	0.005000	0.457711	-33(GTATATAAAAGG,-,0.00)
mm_140402.1	chr17	87640217	87640417	+	1	NA	NA	NA	4338	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.070000	0.562189	-27(GCGTCTAAATGC,-,0.00)
mm_25686.1	chr3	122245495	122245695	+	1	NA	NA	NA	38	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.145000	0.726368	
mm_137322.1	chr17	24896442	24896642	+	1	NA	NA	NA	42	NM_019730	79059	Mm.430765	NM_019730	ENSMUSG00000073435	Nme3	1810009F08Rik|AI413736|DR-nm23|Ndk3|Nm23-DR|Nm23-M3	NME/NM23 nucleoside diphosphate kinase 3	protein-coding	0.080000	0.696517	-82(GTCCTTTAAGGG,-,0.00),-80(CCTTTAAGGGAG,+,0.00)
mm_13956.1	chr2	121357675	121357875	+	1	NA	NA	NA	-866	NM_009897	12716	Mm.252145	NM_009897	ENSMUSG00000000308	Ckmt1	Mt-CK|ScCKmit|UbCKmit|mi-CK	creatine kinase, mitochondrial 1, ubiquitous	protein-coding	0.005000	0.552239	
mm_58111.1	chr6	138422779	138422979	-	1	NA	NA	NA	-226	NR_126073	319702	Mm.403785	NR_126072	ENSMUSG00000089957	A830011K09Rik	-	RIKEN cDNA A830011K09 gene	ncRNA	0.025000	0.552239	
mm_111705.1	chr12	103694577	103694777	-	1	NA	NA	NA	12	NM_001164742	68348	Mm.20149	NM_026687	ENSMUSG00000021081	Serpina1f	0610012A11Rik|AI327419|Serpina2|epserin	serine (or cysteine) peptidase inhibitor, clade A, member 1F	protein-coding	0.010000	0.472637	
mm_64682.1	chr7	4509970	4510170	-	1	NA	NA	NA	5905	NM_001277903	21955	Mm.358643	NM_011618	ENSMUSG00000064179	Tnnt1	AW146156|Tnt|sTnT|ssTnT	troponin T1, skeletal, slow	protein-coding	0.045000	0.601990	
mm_62689.1	chr7	110046252	110046452	+	1	NA	NA	NA	-12	NR_033336	100379145	Mm.484711	NR_033336	ENSMUSG00000064451	Snora23	MBI-1	small nucleolar RNA, H/ACA box 23	snoRNA	0.010000	0.338308	
mm_12562.1	chr2	72597447	72597647	+	1	NA	NA	NA	-105963	NR_040503	74541	Mm.410774	NR_040503	ENSMUSG00000085252	8430437L04Rik	-	RIKEN cDNA 8430437L04 gene	ncRNA	0.030000	0.447761	-66(TCTTTTAGACAC,+,0.00),2(CCATTTATGTGC,+,0.00)
mm_7096.1	chr1	88701596	88701796	-	1	NA	NA	NA	495	NM_177305	320982	Mm.27968	NM_177305	ENSMUSG00000049866	Arl4c	A630084M22Rik|Arl7|LAK	ADP-ribosylation factor-like 4C	protein-coding	0.105000	0.721393	
mm_164792.1	chr18	15194659	15194859	+	1	NA	NA	NA	-43313	NM_134112	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.015000	0.527363	
mm_115781.1	chr13	19311390	19311590	-	1	NA	NA	NA	84323	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.000000	0.358209	
mm_10320.1	chr2	11218399	11218599	+	1	NA	NA	NA	46117	NM_008859	18761	Mm.329993	NM_008859	ENSMUSG00000026778	Prkcq	A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq	protein kinase C, theta	protein-coding	0.010000	0.487562	
mm_135759.1	chr16	56116158	56116358	-	1	NA	NA	NA	40778	NM_001304503	66315	Mm.255784	NM_025483	ENSMUSG00000052917	Senp7	2410152H17Rik|2810413I22Rik|2900036C23Rik|6030449K19Rik|AI790676	SUMO1/sentrin specific peptidase 7	protein-coding	0.015000	0.472637	
mm_158479.1	chrX	142196821	142197021	-	1	NA	NA	NA	15	NM_001007576	245650	Mm.208511	NM_001007576	ENSMUSG00000042282	Gucy2f	A930002I06|GC-F|GC2	guanylate cyclase 2f	protein-coding	0.000000	0.427861	
mm_163246.1	chr11	106159785	106159985	-	1	NA	NA	NA	257	NM_172397	67803	Mm.21687	NM_172397	ENSMUSG00000040699	Limd2	0610025L06Rik|AI413966	LIM domain containing 2	protein-coding	0.130000	0.751244	
mm_73357.1	chr8	105518801	105519001	+	1	NA	NA	NA	155	NM_008289	15484	Mm.5079	NM_008289	ENSMUSG00000031891	Hsd11b2	11HSD2	hydroxysteroid 11-beta dehydrogenase 2	protein-coding	0.105000	0.756219	
mm_18013.1	chr2	38287271	38287471	-	1	NA	NA	NA	13	NM_146122	227801	Mm.314245	NM_146122	ENSMUSG00000035392	Dennd1a	6030446I19Rik|connecdenn	DENN/MADD domain containing 1A	protein-coding	0.160000	0.766169	
mm_142096.1	chr17	35834692	35834892	-	1	NA	NA	NA	3509	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.000000	0.358209	
mm_105239.1	chr11	102318999	102319199	-	1	NA	NA	NA	-3	NM_011551	21429	Mm.2845	NM_011551	ENSMUSG00000020923	Ubtf	A930005G04Rik|NOR-90|Tcfubf|UBF|UBF-1|UBF1	upstream binding transcription factor, RNA polymerase I	protein-coding	0.175000	0.845771	
mm_159202.1	chr2	120977469	120977669	+	1	NA	NA	NA	507	NM_175285	96957	Mm.315212	NM_175285	ENSMUSG00000054484	Tmem62	B830009D23Rik|C77355	transmembrane protein 62	protein-coding	0.090000	0.696517	
mm_56675.1	chr6	113717593	113717793	-	1	NA	NA	NA	-1	NR_138135	58991	Mm.379095	NM_021488	ENSMUSG00000064177	Ghrl	2210006E23Rik|Ghr|MTLRP|MTLRPAP|m46	ghrelin	protein-coding	0.000000	0.442786	
mm_117521.1	chr13	81545171	81545371	-	1	NA	NA	NA	87873	NM_054053	110789	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.000000	0.283582	
mm_57989.1	chr6	136172066	136172266	-	1	NA	NA	NA	1345	NM_008171	14812	Mm.436649	NM_008171	ENSMUSG00000030209	Grin2b	AW490526|GluN2B|NR2B|Nmdar2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	protein-coding	0.050000	0.542289	
mm_64202.1	chr7	141470282	141470482	+	1	NA	NA	NA	1593	NM_001111050	12476	Mm.30246	NM_009842	ENSMUSG00000025510	Cd151	PETA-3|SFA-1|Tspan24	CD151 antigen	protein-coding	0.025000	0.557214	
mm_89676.1	chr10	97517400	97517600	+	1	NA	NA	NA	35169	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.035000	0.472637	
mm_39194.1	chr4	155992539	155992739	-	1	NA	NA	NA	39	NM_080445	117592	Mm.440185	NM_080445	ENSMUSG00000050796	B3galt6	BB129894|GalTII	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	protein-coding	0.150000	0.741294	
mm_63090.1	chr7	122337501	122337701	+	1	NA	NA	NA	48476	NM_008855	18751	Mm.207496	NM_008855	ENSMUSG00000052889	Prkcb	PKC-B|PKC-Beta|Pkcb|Prkcb1|Prkcb2	protein kinase C, beta	protein-coding	0.005000	0.388060	
mm_111291.1	chr12	85468566	85468766	-	1	NA	NA	NA	-5235	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.005000	0.393035	
mm_139556.1	chr17	56875414	56875614	+	1	NA	NA	NA	-119	NM_030141	78625	Mm.160106	NM_030141	ENSMUSG00000024209	1700061G19Rik	1700026H02|AI507598	RIKEN cDNA 1700061G19 gene	protein-coding	0.020000	0.542289	
mm_164206.1	chr15	82181055	82181255	+	1	NA	NA	NA	-16967	NR_029804	723897		NR_029804	ENSMUSG00000065465	Mir33	Mirn33|mir-33|mmu-mir-33	microRNA 33	ncRNA	0.010000	0.517413	
mm_87767.1	chr10	60293287	60293487	+	1	NA	NA	NA	8926	NM_001146124	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.025000	0.542289	
mm_102309.1	chr11	55608505	55608705	-	1	NA	NA	NA	-407	NM_020492	14654	Mm.89320	NM_020492	ENSMUSG00000000263	Glra1	nmf11|oscillator|ot|spasmodic|spd	glycine receptor, alpha 1 subunit	protein-coding	0.030000	0.527363	
mm_4281.1	chr1	171634663	171634863	+	1	NA	NA	NA	7137	NR_106151	102465784		NR_106151	ENSMUSG00000098316	Mir7683	Gm27950|mmu-mir-7683	microRNA 7683	ncRNA	0.010000	0.472637	
mm_56496.1	chr6	99234208	99234408	-	1	NA	NA	NA	32207	NM_001197321	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.005000	0.422886	
mm_25779.1	chr3	126597146	126597346	+	1	NA	NA	NA	295	NM_023813	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.135000	0.756219	
mm_55636.1	chr6	72333261	72333461	-	1	NA	NA	NA	11814	NM_138592	28035	Mm.281900	NM_138592	ENSMUSG00000056305	Usp39	AA408960|AI894154|CGI-21|D6Wsu157e|SAD1	ubiquitin specific peptidase 39	protein-coding	0.025000	0.522388	
mm_51339.1	chr6	72414271	72414471	+	1	NA	NA	NA	63	NM_019802	56316	Mm.19937	NM_019802	ENSMUSG00000053460	Ggcx	-	gamma-glutamyl carboxylase	protein-coding	0.080000	0.656716	
mm_121025.1	chr14	79619653	79619853	+	1	NA	NA	NA	32062	NM_026474	67955	Mm.18972	NM_026474	ENSMUSG00000022024	Sugt1	2410174K12Rik|SGT1	SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)	protein-coding	0.015000	0.398010	
mm_167576.1	chr9	44567686	44567886	-	1	NA	NA	NA	-37106	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.020000	0.507463	
mm_87119.1	chr10	33256855	33257055	+	1	NA	NA	NA	-598	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.005000	0.398010	-58(TTCTTTAAATGG,-,0.00),-56(CTTTAAATGGGG,+,0.00)
mm_58986.1	chr7	19083768	19083968	+	1	NA	NA	NA	19	NM_001190491	13400	Mm.6529	NM_032418	ENSMUSG00000030409	Dmpk	DM|DMK|Dm15|MDPK|MT-PK	dystrophia myotonica-protein kinase	protein-coding	0.030000	0.651741	
mm_37691.1	chr4	129239120	129239320	-	1	NA	NA	NA	-2	NM_001285865	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.110000	0.810945	
mm_172895.1	chr9	56223668	56223868	-	1	NA	NA	NA	-62698	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.165000	0.736318	
mm_75394.1	chr8	45999800	46000000	-	1	NA	NA	NA	-50	NM_001039562	654824	Mm.334517	NM_001039562	ENSMUSG00000050914	Ankrd37	-	ankyrin repeat domain 37	protein-coding	0.070000	0.696517	
mm_30812.1	chr4	21727606	21727806	+	1	NA	NA	NA	5	NM_001290420	51813	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	0.095000	0.641791	
mm_72300.1	chr8	76899162	76899362	+	1	NA	NA	NA	911	NR_028579	100039211	Mm.367571	NR_028579	ENSMUSG00000074235	Gm10649	ENSMUSG00000074235	predicted gene 10649	ncRNA	0.160000	0.771144	-1(CCCTTTCTGGGC,+,0.00)
mm_118813.1	chr14	25465514	25465714	+	1	NA	NA	NA	6429	NM_183208	328365	Mm.227484	NM_183208	ENSMUSG00000007817	Zmiz1	BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10	zinc finger, MIZ-type containing 1	protein-coding	0.010000	0.547264	
mm_20689.1	chr2	132792516	132792716	-	1	NA	NA	NA	11338	NM_007694	12653	Mm.255241	NM_007694	ENSMUSG00000027350	Chgb	Scg-1	chromogranin B	protein-coding	0.020000	0.492537	
mm_53410.1	chr6	132571941	132572141	+	1	NA	NA	NA	2199	NM_011174	19131	Mm.425348	NM_011174	ENSMUSG00000059934	Prh1	MP2|Prp	proline rich protein HaeIII subfamily 1	protein-coding	0.005000	0.706468	
mm_53079.1	chr6	124935690	124935890	+	1	NA	NA	NA	4402	NM_001170341	30853	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.035000	0.562189	
mm_56591.1	chr6	108471557	108471757	-	1	NA	NA	NA	-18086	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.025000	0.497512	
mm_85739.1	chr9	108566800	108567000	-	1	NA	NA	NA	442	NM_023247	66706	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3	protein-coding	0.085000	0.606965	
mm_68665.1	chr7	118855878	118856078	-	1	NA	NA	NA	20	NM_001168218	66356	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0.160000	0.761194	
mm_142029.1	chr17	35235138	35235338	-	1	NA	NA	NA	228	NM_001347351	66237	Mm.396107	NM_023179	ENSMUSG00000024403	Atp6v1g2	1500002D01Rik|Atp6g2|NG38|VAG2	ATPase, H+ transporting, lysosomal V1 subunit G2	protein-coding	0.070000	0.621891	
mm_116628.1	chr13	48967917	48968117	-	1	NA	NA	NA	-95	NR_015601	68128	Mm.426304	NR_015601		Fam120aos	C030044B11Rik	family with sequence similarity 120A, opposite strand	ncRNA	0.160000	0.825871	
mm_111657.1	chr12	102878366	102878566	-	1	NA	NA	NA	-60	NM_172806	238386	Mm.63456	NM_172806	ENSMUSG00000041702	Btbd7	5730507E09Rik|8030448M07|E130118E17Rik|FUP1|mKIAA1525	BTB (POZ) domain containing 7	protein-coding	0.140000	0.761194	
mm_17952.1	chr2	37350753	37350953	-	1	NA	NA	NA	8479	NM_026176	67466	Mm.30709	NM_026176	ENSMUSG00000009030	Pdcl	1200011E13Rik|AW108059|PhLP1	phosducin-like	protein-coding	0.000000	0.283582	21(GTCTTTAAATGA,-,0.00)
mm_66806.1	chr7	47252756	47252956	-	1	NA	NA	NA	-8	NM_001288801	668725	Mm.436563	NM_001177566	ENSMUSG00000074111	Mrgpra9	EG668725|MrgA9	MAS-related GPR, member A9	protein-coding	0.000000	0.402985	
mm_40022.1	chr5	33336176	33336376	+	1	NA	NA	NA	704	NM_021500	59003	Mm.138617	NM_021500	ENSMUSG00000079562	Maea	1110030D19Rik|EMP|Gid9	macrophage erythroblast attacher	protein-coding	0.050000	0.552239	57(AGCCTTAAGAGG,-,0.00)
mm_14970.1	chr2	152093631	152093831	+	1	NA	NA	NA	-11793	NM_029688	76650	Mm.218639	NM_029688	ENSMUSG00000032802	Srxn1	1700127B04Rik|AI854065|AW488194|Npn3|Srx|Srx1|TX01	sulfiredoxin 1 homolog (S. cerevisiae)	protein-coding	0.125000	0.676617	
mm_85480.1	chr9	106040692	106040892	-	1	NA	NA	NA	55899	NM_026763	68553	Mm.28854	NM_026763	ENSMUSG00000032572	Col6a4	1110001D15Rik|AI413310|AU023415|Dvwa|EG235580|Vwa6	collagen, type VI, alpha 4	protein-coding	0.015000	0.547264	60(CCCTTAAAACCA,+,0.00)
mm_107286.1	chr12	29811476	29811676	+	1	NA	NA	NA	-125131	NR_046080	328075	Mm.447832	NR_046080		C630031E19Rik	C630031E19	RIKEN cDNA C630031E19 gene	ncRNA	0.035000	0.447761	
mm_83693.1	chr9	50592976	50593176	-	1	NA	NA	NA	10773	NM_025848	66925	Mm.10406	NM_025848	ENSMUSG00000000171	Sdhd	3110001M13Rik|AVLL5809|C78570|PRO19626	succinate dehydrogenase complex, subunit D, integral membrane protein	protein-coding	0.025000	0.487562	
mm_2367.1	chr1	93168509	93168709	+	1	NA	NA	NA	186	NM_001310428	381284	Mm.193346	NM_001310428	ENSMUSG00000084989	Crocc2	E030010N08Rik|Gm976	ciliary rootlet coiled-coil, rootletin family member 2	protein-coding	0.015000	0.542289	
mm_154850.1	chrX	20547640	20547840	+	1	NA	NA	NA	-2078	NM_009060	19733	Mm.2118	NM_009060	ENSMUSG00000023070	Rgn	AI265316|GNL|SMP30	regucalcin	protein-coding	0.015000	0.447761	
mm_123332.1	chr14	63049796	63049996	-	1	NA	NA	NA	2905	NM_001034910	619548	Mm.387101	NM_001034910	ENSMUSG00000054763	Defb42	BD-42|Defb44|mBD-42	defensin beta 42	protein-coding	0.025000	0.587065	
mm_108596.1	chr12	85389328	85389528	+	1	NA	NA	NA	-14711	NM_026775	68581	Mm.379159	NM_026775	ENSMUSG00000021248	Tmed10	1110014C03Rik|Tmp21|p23|p24delta1	transmembrane p24 trafficking protein 10	protein-coding	0.010000	0.497512	-8(AGGCCTATAAGG,-,0.00)
mm_79140.1	chr9	47644987	47645187	+	1	NA	NA	NA	114735	NM_018770	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.010000	0.462687	-21(GCATTTTAAAGC,-,0.00)
mm_37576.1	chr4	126256198	126256398	-	1	NA	NA	NA	21	NM_144941	245877	Mm.266716	NM_144941	ENSMUSG00000028849	Map7d1	AV028413|BC019977|Mtap7d1|Parcc1|Rprc1|mKIAA1187	MAP7 domain containing 1	protein-coding	0.105000	0.686567	
mm_121435.1	chr14	120413247	120413447	+	1	NA	NA	NA	-65114	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.010000	0.467662	8(AGCTATTAAAGG,-,0.00)
mm_80552.1	chr9	83008509	83008709	+	1	NA	NA	NA	-33120	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.000000	0.472637	
mm_119245.1	chr14	33923222	33923422	+	1	NA	NA	NA	-265	NM_145741	14560	Mm.432071	NM_145741	ENSMUSG00000021943	Gdf10	Bmp3b	growth differentiation factor 10	protein-coding	0.090000	0.721393	
mm_26635.1	chr3	152979666	152979866	+	1	NA	NA	NA	2441	NM_012028	26938	Mm.40915	NM_012028	ENSMUSG00000039037	St6galnac5	AI851940|Siat7e	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	protein-coding	0.010000	0.487562	
mm_98610.1	chr11	95842586	95842786	+	1	NA	NA	NA	18	NM_001038664	14710	Mm.46299	NM_023121	ENSMUSG00000038811	Gngt2	AV096488	guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 2	protein-coding	0.010000	0.562189	
mm_149663.1	chr19	18731335	18731535	+	1	NA	NA	NA	18199	NM_177640	225995	Mm.28101	NM_177640	ENSMUSG00000047044	D030056L22Rik	-	RIKEN cDNA D030056L22 gene	protein-coding	0.025000	0.457711	
mm_151415.1	chr19	56722019	56722219	+	1	NA	NA	NA	-253	NM_007419	11554	Mm.46797	NM_007419	ENSMUSG00000035283	Adrb1	Adrb-1|beta-AR	adrenergic receptor, beta 1	protein-coding	0.120000	0.766169	
mm_165236.1	chr2	60284243	60284443	-	1	NA	NA	NA	141	NM_025422	66205	Mm.227281	NM_025422	ENSMUSG00000060703	Cd302	1110055L24Rik|AI159627	CD302 antigen	protein-coding	0.030000	0.417910	
mm_78278.1	chr9	22101004	22101204	+	1	NA	NA	NA	1851	NM_009922	12797	Mm.4356	NM_009922	ENSMUSG00000001349	Cnn1	CN|CnnI	calponin 1	protein-coding	0.025000	0.592040	
mm_138323.1	chr17	34850298	34850498	+	1	NA	NA	NA	7	NM_001045864	27632	Mm.653	NM_138580	ENSMUSG00000024369	Nelfe	D17H6S45|NELF-E|RD|Rdbp	negative elongation factor complex member E, Rdbp	protein-coding	0.160000	0.741294	
mm_123245.1	chr14	60251379	60251579	-	1	NA	NA	NA	-101	NM_170591	71844	Mm.258051	NM_170591	ENSMUSG00000063895	Nupl1	1700017F11Rik|Nup58|mKIAA0410	nucleoporin like 1	protein-coding	0.145000	0.721393	
mm_115186.1	chr13	108449919	108450119	+	1	NA	NA	NA	133682	NM_178683	218581	Mm.32318	NM_178683	ENSMUSG00000021697	Depdc1b	9830132O03|AW260467|XTP1	DEP domain containing 1B	protein-coding	0.000000	0.492537	
mm_95665.1	chr11	53772017	53772217	+	1	NA	NA	NA	1644	NM_001159396	16362	Mm.105218	NM_008390	ENSMUSG00000018899	Irf1	AU020929|Irf-1	interferon regulatory factor 1	protein-coding	0.000000	0.527363	
mm_125285.1	chr15	36726223	36726423	+	1	NA	NA	NA	64609	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.000000	0.437811	
mm_170264.1	chr18	16994466	16994666	-	1	NA	NA	NA	-40942	NR_130158	75433	Mm.60907	NR_130158	ENSMUSG00000087170	1700001G01Rik	-	RIKEN cDNA 1700001G01 gene	ncRNA	0.030000	0.582090	
mm_173066.1	chrX	134541520	134541720	-	1	NA	NA	NA	50	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.110000	0.691542	
mm_82806.1	chr9	29962941	29963141	-	1	NA	NA	NA	88	NM_172290	235106	Mm.283138	NM_172290	ENSMUSG00000059974	Ntm	6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390	neurotrimin	protein-coding	0.025000	0.437811	
mm_32986.1	chr4	120137578	120137778	+	1	NA	NA	NA	-23528	NM_007902	13615	Mm.284855	NM_007902	ENSMUSG00000028635	Edn2	ET-2|PPET2|VIC	endothelin 2	protein-coding	0.030000	0.378109	
mm_5028.1	chr1	193274507	193274707	+	1	NA	NA	NA	-1419	NM_008059	14373	Mm.439721	NM_008059	ENSMUSG00000009633	G0s2	AI255151|AV006465	G0/G1 switch gene 2	protein-coding	0.010000	0.562189	
mm_74421.1	chr8	3625479	3625679	-	1	NA	NA	NA	-34	NM_001129803	18545	Mm.440882	NM_008790	ENSMUSG00000004630	Pcp2	L7|Pcp-2	Purkinje cell protein 2 (L7)	protein-coding	0.000000	0.507463	0(GCCTTTTAAAAG,-,0.00),1(CCTTTTAAAAGG,+,0.00),1(CCTTTTAAAAGG,-,0.00),2(CTTTTAAAAGGC,+,0.00)
mm_65593.1	chr7	27329783	27329983	-	1	NA	NA	NA	3765	NM_001113549	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.025000	0.522388	
mm_100745.1	chr11	4123319	4123519	-	1	NA	NA	NA	-4690	NM_144520	67815	Mm.253922	NM_144520	ENSMUSG00000003585	Sec14l2	1300013M05Rik|Spf|TAP	SEC14-like lipid binding 2	protein-coding	0.005000	0.482587	
mm_147254.1	chr18	38631470	38631670	-	1	NA	NA	NA	-30302	NM_011898	24066	Mm.42038	NM_011898	ENSMUSG00000024427	Spry4	A030006O18Rik|sprouty4	sprouty homolog 4 (Drosophila)	protein-coding	0.040000	0.636816	-79(GGCTCTTAAAGA,-,0.00),-78(GCTCTTAAAGAG,+,0.00),-76(TCTTAAAGAGAC,+,0.00)
mm_118441.1	chr14	8098146	8098346	+	1	NA	NA	NA	33	NM_178279	218699	Mm.29515	NM_145458	ENSMUSG00000033885	Pxk	C230080L11Rik|D14Ertd813e|MONaKA	PX domain containing serine/threonine kinase	protein-coding	0.175000	0.800995	
mm_138528.1	chr17	35242774	35242974	+	1	NA	NA	NA	57	NM_001252457	53817	Mm.439827	NM_019693	ENSMUSG00000019432	Ddx39b	0610030D10Rik|AI428441|Bat-1|Bat1|Bat1a|D17H6S81E|D17H6S81E-1|D6S81Eh	DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B	protein-coding	0.045000	0.532338	
mm_142111.1	chr17	35836143	35836343	-	1	NA	NA	NA	2058	NM_011655	22154	Mm.273538	NM_011655	ENSMUSG00000001525	Tubb5	AA408537|AI596182|B130022C14Rik|M(beta)5	tubulin, beta 5 class I	protein-coding	0.035000	0.492537	
mm_50924.1	chr6	57608826	57609026	+	1	NA	NA	NA	27934	NM_025992	67138	Mm.297393	NM_025992	ENSMUSG00000029798	Herc6	1700121D12Rik|2510038N07Rik|4930427L17Rik|AI451296|CEB1|Herc5	hect domain and RLD 6	protein-coding	0.000000	0.437811	
mm_136675.1	chr17	6158665	6158865	+	1	NA	NA	NA	20617	NM_054040	68842	Mm.449307	NM_054040	ENSMUSG00000034377	Tulp4	1110057P05Rik|2210038L17Rik|Tusp	tubby like protein 4	protein-coding	0.000000	0.363184	
mm_148081.1	chr18	73179233	73179433	-	1	NA	NA	NA	-393372	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.000000	0.283582	
mm_90829.1	chr10	7956182	7956382	-	1	NA	NA	NA	-159	NM_138667	68652	Mm.193041	NM_138667	ENSMUSG00000015755	Tab2	1110030N06Rik|A530078N03Rik|Map3k7ip2|mKIAA0733	TGF-beta activated kinase 1/MAP3K7 binding protein 2	protein-coding	0.145000	0.741294	
mm_166483.1	chr5	146385136	146385336	+	1	NA	NA	NA	230	NM_145155	245880	Mm.472750	NM_145155	ENSMUSG00000029636	Wasf3	Scar3|Wave3	WAS protein family, member 3	protein-coding	0.160000	0.781095	
mm_132598.1	chr16	38483078	38483278	+	1	NA	NA	NA	24245	NM_009855	12519	Mm.89474	NM_009855	ENSMUSG00000075122	Cd80	B71|Cd28l|Ly-53|Ly53|MIC17|TSA1	CD80 antigen	protein-coding	0.040000	0.497512	
mm_6630.1	chr1	78311878	78312078	-	1	NA	NA	NA	1632	NM_001004173	433323	Mm.276248	NM_001004173	ENSMUSG00000032908	Sgpp2	SPPase2|Spp2	sphingosine-1-phosphate phosphotase 2	protein-coding	0.010000	0.417910	
mm_95533.1	chr11	52253580	52253780	+	1	NA	NA	NA	21685	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.005000	0.572139	
mm_129781.1	chr15	82794148	82794348	-	1	NA	NA	NA	-3	NM_029562	76279	Mm.439931	NM_029562	ENSMUSG00000022445	Cyp2d26	1300006E06Rik	cytochrome P450, family 2, subfamily d, polypeptide 26	protein-coding	0.005000	0.472637	-31(CTCTTTATAAGG,-,0.00),-29(CTTTATAAGGGA,+,0.00)
mm_65443.1	chr7	25390030	25390230	-	1	NA	NA	NA	-18	NM_001039507	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.010000	0.592040	
mm_87661.1	chr10	58485896	58486096	+	1	NA	NA	NA	-11941	NM_001162956	76138	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.000000	0.258706	-85(CAATATATAAGG,-,0.00)
mm_65768.1	chr7	28759850	28760050	-	1	NA	NA	NA	3776	NM_001195091	100504112	Mm.379654	NM_001195091	ENSMUSG00000096257	Ccer2	EG624918|Gm6537	coiled-coil glutamate-rich protein 2	protein-coding	0.065000	0.671642	
mm_148222.1	chr18	80312882	80313082	-	1	NA	NA	NA	51272	NM_001190373	240444	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.010000	0.398010	
mm_28436.1	chr3	90466283	90466483	-	1	NA	NA	NA	-517	NM_008727	18160	Mm.4627	NM_008727	ENSMUSG00000027931	Npr1	AI893888|GC-A|NPR-A|NPRA|Pndr	natriuretic peptide receptor 1	protein-coding	0.030000	0.527363	
mm_165345.1	chr2	118677156	118677356	+	1	NA	NA	NA	10	NM_001145854	214230	Mm.241857	NM_001033254	ENSMUSG00000074923	Pak6	4732456M09	p21 protein (Cdc42/Rac)-activated kinase 6	protein-coding	0.125000	0.766169	
mm_3895.1	chr1	161417732	161417932	+	1	NA	NA	NA	22394	NM_009452	22164	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	0.015000	0.447761	
mm_140409.1	chr17	87646181	87646381	+	1	NA	NA	NA	10302	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.055000	0.562189	
mm_118545.1	chr14	17659133	17659333	+	1	NA	NA	NA	-1727	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.020000	0.512438	
mm_116554.1	chr13	46727503	46727703	-	1	NA	NA	NA	246	NM_175749	218210	Mm.255398	NM_175749	ENSMUSG00000021374	Nup153	B130015D15Rik|C88147	nucleoporin 153	protein-coding	0.140000	0.761194	
mm_144642.1	chr18	33067328	33067528	+	1	NA	NA	NA	128387	NM_009793	12326	Mm.222329	NM_009793	ENSMUSG00000038128	Camk4	A430110E23Rik|AI666733|CaMKIV|CaMKIV/Gr|D18Bwg0362e	calcium/calmodulin-dependent protein kinase IV	protein-coding	0.000000	0.333333	
mm_166792.1	chr6	145615891	145616091	+	1	NA	NA	NA	28	NM_009449	22147	Mm.270295	NM_009449	ENSMUSG00000067338	Tuba3b	M[a]7|Tuba7	tubulin, alpha 3B	protein-coding	0.070000	0.592040	
mm_99226.1	chr11	101048346	101048546	+	1	NA	NA	NA	18106	NR_105893	102466767		NR_105893	ENSMUSG00000098415	Mir6928	Gm27728|mmu-mir-6928	microRNA 6928	ncRNA	0.040000	0.557214	-76(CCGCATTAAAGC,-,0.00)
mm_21536.1	chr2	163690666	163690866	-	1	NA	NA	NA	-3271	NM_011106	18769	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.020000	0.547264	
mm_53295.1	chr6	129036615	129036815	+	1	NA	NA	NA	-9186	NR_024262	232408	Mm.259262	NM_153094	ENSMUSG00000030154	Klrb1f	A630024B12Rik|Nkr-p1f|Nkrp1-f|Nkrp1f	killer cell lectin-like receptor subfamily B member 1F	protein-coding	0.000000	0.527363	
mm_134976.1	chr16	32073700	32073900	-	1	NA	NA	NA	5542	NM_177326	224105	Mm.234204	NM_177326	ENSMUSG00000022781	Pak2	5330420P17Rik|A130002K10Rik|AI836325|D16Ertd269e|PAK-2|mKIAA4182	p21 protein (Cdc42/Rac)-activated kinase 2	protein-coding	0.010000	0.427861	
mm_137413.1	chr17	26113713	26113913	+	1	NA	NA	NA	497	NM_021793	60455	Mm.304656	NM_021793	ENSMUSG00000024180	Tmem8	AW490096|M83|Tmem8a	transmembrane protein 8 (five membrane-spanning domains)	protein-coding	0.075000	0.587065	
mm_32529.1	chr4	108879036	108879236	+	1	NA	NA	NA	66	NM_023537	69908	Mm.41580	NM_023537	ENSMUSG00000003411	Rab3b	2610528C18Rik	RAB3B, member RAS oncogene family	protein-coding	0.070000	0.656716	
mm_71462.1	chr8	46530886	46531086	+	1	NA	NA	NA	-21083	NM_027973	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.005000	0.457711	
mm_145816.1	chr18	65430898	65431098	+	1	NA	NA	NA	1	NM_172833	240354	Mm.132613	NM_172833	ENSMUSG00000032688	Malt1	A630046N12|D430033E09Rik|Pcasp1	MALT1 paracaspase	protein-coding	0.095000	0.716418	
mm_25371.1	chr3	107102491	107102691	+	1	NA	NA	NA	1024	NM_008417	16490	Mm.39285	NM_008417	ENSMUSG00000040724	Kcna2	Akr6a4|ENSMUSG00000074335|Gm10672|Kca1-2|Kv1.2|Mk-2	potassium voltage-gated channel, shaker-related subfamily, member 2	protein-coding	0.055000	0.636816	
mm_162863.1	chr10	93261398	93261598	+	1	NA	NA	NA	49661	NM_001322268	13713	Mm.4454	NM_013508	ENSMUSG00000008398	Elk3	D430049E23Rik|Erp|Etrp|Net|Sap-2	ELK3, member of ETS oncogene family	protein-coding	0.025000	0.542289	
mm_140399.1	chr17	87636624	87636824	+	1	NA	NA	NA	745	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.195000	0.815920	
mm_144204.1	chr18	9489909	9490109	+	1	NA	NA	NA	-39859	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.000000	0.432836	
mm_127921.1	chr15	9580551	9580751	-	1	NA	NA	NA	-50775	NM_008372	16197	Mm.389	NM_008372	ENSMUSG00000003882	Il7r	CD127|IL-7Ralpha	interleukin 7 receptor	protein-coding	0.035000	0.527363	
mm_23539.1	chr3	61363658	61363858	+	1	NA	NA	NA	-749	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.025000	0.537313	
mm_9797.1	chr1	181842942	181843142	-	1	NA	NA	NA	-641	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.040000	0.517413	
mm_17264.1	chr2	26013641	26013841	-	1	NA	NA	NA	8019	NM_133835	98766	Mm.247824	NM_133835	ENSMUSG00000036352	Ubac1	1110033G07Rik|AA407978|GBDR1|Gdbr1|Kpc2|Ubadc1	ubiquitin associated domain containing 1	protein-coding	0.015000	0.477612	
mm_106655.1	chr11	121196254	121196454	-	1	NA	NA	NA	-8079	NM_001001333	238023	Mm.275130	NM_001001333	ENSMUSG00000039307	Hexdc	BC069960	hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing	protein-coding	0.020000	0.492537	
mm_114750.1	chr13	84285130	84285330	+	1	NA	NA	NA	62934	NM_175187	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	0.010000	0.427861	43(CTCTCTAAAGGC,-,0.00)
mm_23888.1	chr3	83031232	83031432	+	1	NA	NA	NA	5179	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.025000	0.582090	
mm_72407.1	chr8	81775584	81775784	+	1	NA	NA	NA	433122	NM_001297593	234515	Mm.324468	NM_001024617	ENSMUSG00000037940	Inpp4b	E130107I17Rik	inositol polyphosphate-4-phosphatase, type II	protein-coding	0.010000	0.348259	
mm_41062.1	chr5	86903717	86903917	+	1	NA	NA	NA	3120	NM_153598	100727	Mm.281844	NM_153598	ENSMUSG00000029260	Ugt2b34	AI788959	UDP glucuronosyltransferase 2 family, polypeptide B34	protein-coding	0.000000	0.373134	-88(TCATTTATAGAC,+,0.00)
mm_60044.1	chr7	31059491	31059691	+	1	NA	NA	NA	-344	NM_144556	243914	Mm.389870	NM_144556	ENSMUSG00000036560	Lgi4	Lgil3|clp	leucine-rich repeat LGI family, member 4	protein-coding	0.005000	0.552239	
mm_97649.1	chr11	79412579	79412779	+	1	NA	NA	NA	71352	NR_045305	104522	Mm.436987	NR_045305	ENSMUSG00000091523	AU040972	AU040954	expressed sequence AU040972	ncRNA	0.005000	0.308458	
mm_115495.1	chr13	3804127	3804327	-	1	NA	NA	NA	91	NM_027416	70405	Mm.20079	NM_027416	ENSMUSG00000063130	Calml3	2310068O22Rik|AI326174	calmodulin-like 3	protein-coding	0.030000	0.577114	
mm_131192.1	chr16	7278107	7278307	+	1	NA	NA	NA	208372	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.005000	0.462687	
mm_45837.1	chr5	87694893	87695093	-	1	NA	NA	NA	4432	NM_001286020	12991	Mm.268737	NM_009972	ENSMUSG00000063157	Csn2	Csnb	casein beta	protein-coding	0.015000	0.447761	
mm_70122.1	chr7	143008605	143008805	-	1	NA	NA	NA	3046	NM_001128081	27027	Mm.28172	NM_020286	ENSMUSG00000000244	Tspan32	AW208513|Art-1|BB235973|D7Wsu37e|Phemx|Tssc6	tetraspanin 32	protein-coding	0.010000	0.547264	
mm_159447.1	chr3	134239967	134240167	+	1	NA	NA	NA	516	NR_035435	100316832		NR_035435	ENSMUSG00000084564	Mir1895	Mirn1895|mmu-mir-1895	microRNA 1895	ncRNA	0.165000	0.840796	
mm_112868.1	chr13	20849918	20850118	+	1	NA	NA	NA	55905	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.010000	0.462687	
mm_19526.1	chr2	94178819	94179019	-	1	NA	NA	NA	-21010	NM_019657	56348	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0.050000	0.537313	
mm_48622.1	chr5	144965803	144966003	-	1	NA	NA	NA	-73	NM_029438	75788	Mm.27735	NM_029438	ENSMUSG00000038780	Smurf1	4930431E10Rik|mKIAA1625	SMAD specific E3 ubiquitin protein ligase 1	protein-coding	0.185000	0.800995	
mm_124632.1	chr15	4026630	4026830	+	1	NA	NA	NA	302	NM_024188	67041	Mm.13445	NM_024188	ENSMUSG00000022186	Oxct1	2610008O03Rik|Oxct|Oxct2a|Scot-s	3-oxoacid CoA transferase 1	protein-coding	0.140000	0.731343	
mm_156212.1	chrX	134685070	134685270	+	1	NA	NA	NA	1292	NR_045454	77983	Mm.153204	NR_045454	ENSMUSG00000087024	B230119M05Rik	-	RIKEN cDNA B230119M05 gene	ncRNA	0.010000	0.517413	
mm_145156.1	chr18	46525072	46525272	+	1	NA	NA	NA	799	NM_173423	240263	Mm.38249	NM_173423	ENSMUSG00000033319	Fem1c	2610312A07Rik|3632443A22Rik|AI646567	fem-1 homolog c (C.elegans)	protein-coding	0.070000	0.577114	
mm_111481.1	chr12	98737408	98737608	-	1	NA	NA	NA	-103	NM_001146199	24000	Mm.4420	NM_011877	ENSMUSG00000021009	Ptpn21	PTPD1|PTPRL10	protein tyrosine phosphatase, non-receptor type 21	protein-coding	0.160000	0.830846	
mm_167614.1	chr9	56160081	56160281	+	1	NA	NA	NA	889	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.010000	0.447761	20(CCTTTTATAGAA,+,0.00),43(GCTTTAAAAATC,+,0.00),69(ACATTTAAAAGG,-,0.00)
mm_158320.1	chrX	133688912	133689112	-	1	NA	NA	NA	-19	NM_001105246	279653	Mm.39738	NM_001105245	ENSMUSG00000051323	Pcdh19	B530002L05Rik|Gm717|mKIAA1313	protocadherin 19	protein-coding	0.090000	0.701493	
mm_80175.1	chr9	72274807	72275007	+	1	NA	NA	NA	19	NM_001311105	235469	Mm.242791	NM_146224	ENSMUSG00000038535	Zfp280d	A930005F02Rik|BC027163|Suhw4|ZNF634|Znf280d	zinc finger protein 280D	protein-coding	0.105000	0.736318	
mm_75080.1	chr8	33914120	33914320	-	1	NA	NA	NA	15643	NM_019733	19663	Mm.323997	NM_019733	ENSMUSG00000031586	Rbpms	2010300K22Rik|2700019M19Rik|AU017537|RBP-MS|hermes	RNA binding protein gene with multiple splicing	protein-coding	0.040000	0.572139	54(CTTTTTAAAAAC,+,0.00)
mm_112831.1	chr13	20818773	20818973	+	1	NA	NA	NA	24760	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.343284	
mm_42706.1	chr5	120145701	120145901	+	1	NA	NA	NA	-6538	NR_045793	100503427	Mm.446834	NR_045793	ENSMUSG00000097368	Gm10390	ENSMUSG00000072671	predicted gene 10390	ncRNA	0.040000	0.482587	-6(TTTTTTAAAGAG,+,0.00)
mm_112853.1	chr13	20836127	20836327	+	1	NA	NA	NA	42114	NM_012054	27052	Mm.314046	NM_012054	ENSMUSG00000021322	Aoah	4930433E13Rik	acyloxyacyl hydrolase	protein-coding	0.000000	0.298507	-73(CTTTTTAAAAGC,+,0.00),-73(CTTTTTAAAAGC,-,0.00)
mm_112770.1	chr13	19382514	19382714	+	1	NA	NA	NA	13199	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.512438	
mm_131390.1	chr16	14215658	14215858	+	1	NA	NA	NA	52483	NM_001114085	67203	Mm.24105	NM_023317	ENSMUSG00000022678	Nde1	2810027M15Rik|AU042936|AW822251|Nude|mNudE	nudE neurodevelopment protein 1	protein-coding	0.005000	0.522388	
mm_145669.1	chr18	61399082	61399282	+	1	NA	NA	NA	1249	NM_133249	170826	Mm.415302	NM_133249	ENSMUSG00000033871	Ppargc1b	4631412G21Rik|Perc	peroxisome proliferative activated receptor, gamma, coactivator 1 beta	protein-coding	0.065000	0.656716	
mm_109961.1	chr12	12492762	12492962	-	1	NA	NA	NA	-100387	NR_045829	70858	Mm.410838	NR_045829		4921511I17Rik	-	RIKEN cDNA 4921511I17 gene	ncRNA	0.005000	0.432836	-47(AGCTTTTAAAGG,-,0.00),-46(GCTTTTAAAGGC,+,0.00),-46(GCTTTTAAAGGC,-,0.00),-45(CTTTTAAAGGCA,+,0.00),62(GGATATAAATGG,-,0.00)
mm_30943.1	chr4	33056240	33056440	+	1	NA	NA	NA	-6772	NM_008076	14409	Mm.6227	NM_008076	ENSMUSG00000023267	Gabrr2	-	gamma-aminobutyric acid (GABA) C receptor, subunit rho 2	protein-coding	0.000000	0.452736	
mm_25510.1	chr3	109684473	109684673	+	1	NA	NA	NA	110566	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.015000	0.417910	
mm_170507.1	chr19	24875926	24876126	-	1	NA	NA	NA	-14184	NM_175013	226041	Mm.105222	NM_175013	ENSMUSG00000041731	Pgm5	4833423B07|9530034F03Rik|D830025G17|aciculin	phosphoglucomutase 5	protein-coding	0.005000	0.388060	-31(GCCTTTTTAAGA,-,0.00)
mm_6312.1	chr1	71593049	71593249	-	1	NA	NA	NA	35993	NM_026195	108147	Mm.38010	NM_026195	ENSMUSG00000026192	Atic	2610509C24Rik|AA536954|AW212393	5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase	protein-coding	0.035000	0.512438	
mm_167756.1	chr9	110422296	110422496	-	1	NA	NA	NA	2588	NM_008694	18054	Mm.236225	NM_008694	ENSMUSG00000032484	Ngp	bectenecin	neutrophilic granule protein	protein-coding	0.015000	0.472637	
mm_105566.1	chr11	106572091	106572291	-	1	NA	NA	NA	40739	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.030000	0.567164	-86(TTTTTTATGGTG,+,0.00)
mm_44631.1	chr5	27745478	27745678	-	1	NA	NA	NA	45972	NM_018878	55982	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	0.005000	0.402985	
mm_154717.1	chrX	9199882	9200082	+	1	NA	NA	NA	9	NM_173414	236285	Mm.245119	NM_173414	ENSMUSG00000047344	Lancl3	6030463G20Rik	LanC lantibiotic synthetase component C-like 3 (bacterial)	protein-coding	0.085000	0.686567	
mm_89046.1	chr10	82860222	82860422	+	1	NA	NA	NA	-19	NM_001042514	50493	Mm.210155	NM_015762	ENSMUSG00000020250	Txnrd1	TR|TR1|TrxR1	thioredoxin reductase 1	protein-coding	0.055000	0.557214	
mm_32476.1	chr4	107830853	107831053	+	1	NA	NA	NA	28694	NM_001080926	16975	Mm.442134	NM_053073	ENSMUSG00000028613	Lrp8	4932703M08Rik|AA921429|AI848122|ApoER2|Lr8b	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	protein-coding	0.015000	0.572139	
mm_160529.1	chr9	37992492	37992692	+	1	NA	NA	NA	100	NM_146418	258413	Mm.335066	NM_146418	ENSMUSG00000060583	Olfr881	MOR162-7	olfactory receptor 881	protein-coding	0.005000	0.447761	
mm_98492.1	chr11	94951489	94951689	+	1	NA	NA	NA	15365	NM_007742	12842	Mm.277735	NM_007742	ENSMUSG00000001506	Col1a1	Col1a-1|Cola-1|Cola1|Mov-13|Mov13	collagen, type I, alpha 1	protein-coding	0.030000	0.567164	
mm_143962.1	chr17	87050562	87050762	-	1	NA	NA	NA	25101	NM_019936	56724	Mm.109329	NM_019936	ENSMUSG00000024146	Cript	1200020A08Rik|AA589469	cysteine-rich PDZ-binding protein	protein-coding	0.025000	0.557214	
mm_160922.1	chr11	84880045	84880245	-	1	NA	NA	NA	50	NM_027388	70325	Mm.390414	NM_027388	ENSMUSG00000045140	Pigw	2610044A17Rik|Gwt1	phosphatidylinositol glycan anchor biosynthesis, class W	protein-coding	0.100000	0.686567	
mm_148637.1	chr19	5474709	5474909	+	1	NA	NA	NA	74	NM_001164352	58859	Mm.276367	NM_021474	ENSMUSG00000024909	Efemp2	0610011K11Rik|Fbln4|MBP1	epidermal growth factor-containing fibulin-like extracellular matrix protein 2	protein-coding	0.155000	0.771144	
mm_78066.1	chr9	15306116	15306316	+	1	NA	NA	NA	2	NM_027261	75316	Mm.354115	NM_026541	ENSMUSG00000031939	Taf1d	2810003M17Rik|4930553M18Rik|5930426I11Rik|Josd3|TAF(I)41|TAFI41	TATA-box binding protein associated factor, RNA polymerase I, D	protein-coding	0.100000	0.646766	
mm_138104.1	chr17	34092811	34093011	+	1	NA	NA	NA	532	NM_008206	15001	Mm.116	NM_008206	ENSMUSG00000024334	H2-Oa	H-2Oa	histocompatibility 2, O region alpha locus	protein-coding	0.015000	0.457711	
mm_106274.1	chr11	117989764	117989964	-	1	NA	NA	NA	3007	NM_133757	74451	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.015000	0.552239	
mm_84933.1	chr9	82908634	82908834	-	1	NA	NA	NA	66755	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.035000	0.462687	
mm_122297.1	chr14	34588586	34588786	-	1	NA	NA	NA	-5	NM_001039073	24131	Mm.29733	NM_011918	ENSMUSG00000021798	Ldb3	AW742271|PDLIM6|ZASP	LIM domain binding 3	protein-coding	0.030000	0.601990	-32(GTCCATTTATGG,-,0.00),-30(CCATTTATGGGC,+,0.00)
mm_40390.1	chr5	52742517	52742717	+	1	NA	NA	NA	1043	NM_025951	67073	Mm.248647	NM_025951	ENSMUSG00000029186	Pi4k2b	2610042N09Rik|4933409G22Rik	phosphatidylinositol 4-kinase type 2 beta	protein-coding	0.010000	0.407960	
mm_37124.1	chr4	116666677	116666877	-	1	NA	NA	NA	-15103	NM_021473	58810	Mm.30085	NM_021473	ENSMUSG00000028692	Akr1a1	2610201A18Rik|Akr1a4	aldo-keto reductase family 1, member A1 (aldehyde reductase)	protein-coding	0.010000	0.542289	
mm_39242.1	chr5	3341381	3341581	+	1	NA	NA	NA	-2412	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.105000	0.741294	
mm_15170.1	chr2	154014818	154015018	+	1	NA	NA	NA	6642	NM_008953	19194	Mm.29197	NM_008953	ENSMUSG00000042459	Bpifa2	Bpifa2e|Psp	BPI fold containing family A, member 2	protein-coding	0.005000	0.502488	
mm_159109.1	chr2	42653351	42653551	-	1	NA	NA	NA	147	NM_053011	94217	Mm.441398	NM_053011	ENSMUSG00000049252	Lrp1b	9630004P12Rik|LRP-DIT	low density lipoprotein-related protein 1B (deleted in tumors)	protein-coding	0.005000	0.482587	
mm_51139.1	chr6	69516240	69516440	+	1	NA	NA	NA	-189166	NR_004434	19783		NR_004434	ENSMUSG00000106222	Rprl1	Rmrp2|Rpr|Rprh2	ribonuclease P RNA-like 1	ncRNA	0.035000	0.462687	
mm_51994.1	chr6	92136751	92136951	+	1	NA	NA	NA	44418	NM_001347342	22026	Mm.87062	NM_011630	ENSMUSG00000005893	Nr2c2	TAK1|Tr4|mKIAA4145	nuclear receptor subfamily 2, group C, member 2	protein-coding	0.000000	0.373134	-6(TTTTTTAAAGAC,+,0.00)
mm_70459.1	chr8	11840405	11840605	+	1	NA	NA	NA	-16	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	0.010000	0.477612	-63(CCTTTTATGACC,+,0.00),78(CTTCTTAGAGGC,+,0.00)
mm_129862.1	chr15	83355815	83356015	-	1	NA	NA	NA	-5668	NM_025445	66251	Mm.258910	NM_025445	ENSMUSG00000054277	Arfgap3	0610009H19Rik|1810004P07Rik|1810035F16Rik|9130416J18Rik|Arfgap1	ADP-ribosylation factor GTPase activating protein 3	protein-coding	0.015000	0.378109	
mm_143062.1	chr17	57011199	57011399	-	1	NA	NA	NA	-11	NM_133801	98053	Mm.24632	NM_133801	ENSMUSG00000002658	Gtf2f1	2810405L04Rik|C76800|RAP74	general transcription factor IIF, polypeptide 1	protein-coding	0.050000	0.507463	
mm_78510.1	chr9	32906463	32906663	+	1	NA	NA	NA	22403	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.020000	0.457711	
mm_139463.1	chr17	55954228	55954428	+	1	NA	NA	NA	1705	NM_015766	50498	Mm.256798	NM_015766	ENSMUSG00000003206	Ebi3	EBI-3|IL-27	Epstein-Barr virus induced gene 3	protein-coding	0.040000	0.631841	
mm_40290.1	chr5	43233840	43234040	+	1	NA	NA	NA	477	NM_001177379	231207	Mm.7233	NM_175937	ENSMUSG00000039782	Cpeb2	A630055H10Rik|Cpe-bp2	cytoplasmic polyadenylation element binding protein 2	protein-coding	0.070000	0.686567	
mm_135389.1	chr16	44332609	44332809	-	1	NA	NA	NA	129	NM_198034	320007	Mm.242144	NM_198034	ENSMUSG00000022696	Sidt1	AW045928|B830021E24Rik	SID1 transmembrane family, member 1	protein-coding	0.060000	0.621891	
mm_19594.1	chr2	102186258	102186458	-	1	NA	NA	NA	102	NM_178886	241576	Mm.489740	NM_178886	ENSMUSG00000048058	Ldlrad3	6430500P08|AI194318|Lrad3	low density lipoprotein receptor class A domain containing 3	protein-coding	0.120000	0.781095	
mm_109448.1	chr12	110991500	110991700	+	1	NA	NA	NA	-2798	NR_036598	77878	Mm.293198	NR_036598		6030440G07Rik	-	RIKEN cDNA 6030440G07 gene	ncRNA	0.020000	0.562189	
mm_133315.1	chr16	77646240	77646440	+	1	NA	NA	NA	67	NR_029540	723952		NR_029540	ENSMUSG00000065472	Mir125b-2	Mirn125b-2|mir-125b-2	microRNA 125b-2	ncRNA	0.020000	0.462687	
mm_78739.1	chr9	41588278	41588478	+	1	NA	NA	NA	6452	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA	0.000000	0.303483	-81(GCATATAAAAGC,-,0.00),-53(GGCTATATAAAA,-,0.00),-33(CCATATATAGCT,+,0.00)
mm_107967.1	chr12	72761035	72761235	+	1	NA	NA	NA	-76	NM_008910	19042	Mm.261045	NM_008910	ENSMUSG00000021096	Ppm1a	2310003C21Rik|2900017D14Rik|AI427932|AU017636|MMPa-2|MPPa-1	protein phosphatase 1A, magnesium dependent, alpha isoform	protein-coding	0.130000	0.786070	
mm_5519.1	chr1	37712662	37712862	-	1	NA	NA	NA	7049	NM_028096	72097	Mm.142607	NM_028096	ENSMUSG00000026090	2010300C02Rik	-	RIKEN cDNA 2010300C02 gene	protein-coding	0.010000	0.482587	
mm_168652.1	chr11	87443142	87443342	+	1	NA	NA	NA	15651	NM_001199293	83560	Mm.440758	NM_031386	ENSMUSG00000010342	Tex14	C85585	testis expressed gene 14	protein-coding	0.090000	0.562189	
mm_134634.1	chr16	21694486	21694686	-	1	NA	NA	NA	79	NM_001001881	72190	Mm.131606	NM_001001881	ENSMUSG00000043391	2510009E07Rik	AI194952	RIKEN cDNA 2510009E07 gene	protein-coding	0.075000	0.711443	
mm_79450.1	chr9	56114572	56114772	+	1	NA	NA	NA	24696	NM_011193	19200	Mm.2534	NM_011193	ENSMUSG00000032322	Pstpip1	CD2BP1|def-2	proline-serine-threonine phosphatase-interacting protein 1	protein-coding	0.005000	0.462687	
mm_132966.1	chr16	50783307	50783507	+	1	NA	NA	NA	-2	NR_131006	78639	Mm.160109	NR_131005	ENSMUSG00000092276	1700116B05Rik	-	RIKEN cDNA 1700116B05 gene	ncRNA	0.025000	0.462687	-90(TCTTTTAAAATC,+,0.00)
mm_148746.1	chr19	6046931	6047131	+	1	NA	NA	NA	-114	NM_001164709	74126	Mm.149870	NM_028769	ENSMUSG00000024807	Syvn1	1200010C09Rik|AW211966|C85322|D530017H19Rik|Hrd1	synovial apoptosis inhibitor 1, synoviolin	protein-coding	0.135000	0.691542	
mm_41397.1	chr5	90772444	90772644	+	1	NA	NA	NA	109	NM_019932	56744	Mm.332490	NM_019932	ENSMUSG00000029373	Pf4	Cxcl4|Scyb4	platelet factor 4	protein-coding	0.035000	0.577114	
mm_7331.1	chr1	105157801	105158001	-	1	NA	NA	NA	198809	NM_178779	320311	Mm.389162	NM_178779	ENSMUSG00000047496	Rnf152	A930029B02Rik	ring finger protein 152	protein-coding	0.000000	0.442786	
mm_131886.1	chr16	23225385	23225585	+	1	NA	NA	NA	-536	NM_001252505	20440	Mm.149029	NM_145933	ENSMUSG00000022885	St6gal1	AW742324|Siat1|St6Gal-I|St6gal|St6galI	beta galactoside alpha 2,6 sialyltransferase 1	protein-coding	0.060000	0.616915	
mm_48776.1	chr5	148551565	148551765	-	1	NA	NA	NA	1123	NM_011908	24109	Mm.21846	NM_011908	ENSMUSG00000001687	Ubl3	AW108023|HCG	ubiquitin-like 3	protein-coding	0.035000	0.432836	
mm_110898.1	chr12	75631244	75631444	-	1	NA	NA	NA	405	NR_038063	665931	Mm.341719	NR_038063		Rplp2-ps1	Gm7852	ribosomal protein, large P2, pseudogene 1	pseudo	0.085000	0.522388	
mm_130760.1	chr15	101349350	101349550	-	1	NA	NA	NA	-19902	NR_035462	100316694		NR_035462	ENSMUSG00000088459	Mir1941	mmu-mir-1941	microRNA 1941	ncRNA	0.020000	0.557214	
mm_77081.1	chr8	110502976	110503176	-	1	NA	NA	NA	-720	NR_105058	100861869	Mm.84499	NR_105058		Gm21283	-	predicted gene, 21283	ncRNA	0.045000	0.587065	
mm_154286.1	chr19	60864341	60864541	-	1	NA	NA	NA	-3011	NM_053198	94281	Mm.48179	NM_053198	ENSMUSG00000063698	Sfxn4	-	sideroflexin 4	protein-coding	0.005000	0.482587	
mm_48217.1	chr5	137611300	137611500	-	1	NA	NA	NA	4	NM_008788	18542	Mm.262345	NM_008788	ENSMUSG00000029718	Pcolce	Astt-2|Astt2|P14|PCPE-1	procollagen C-endopeptidase enhancer protein	protein-coding	0.025000	0.641791	
mm_105643.1	chr11	107081208	107081408	-	1	NA	NA	NA	50614	NM_176850	207165	Mm.343986	NM_176850	ENSMUSG00000040481	Bptf	9430093H17Rik|Falz	bromodomain PHD finger transcription factor	protein-coding	0.010000	0.487562	
mm_150545.1	chr19	39315443	39315643	+	1	NA	NA	NA	28458	NM_007815	13095	Mm.20764	NM_007815	ENSMUSG00000003053	Cyp2c29	AHOH|AHOHase|AI159681|AI196010|Ah-2|Ahh-1|Cyp2c|P450-2C	cytochrome P450, family 2, subfamily c, polypeptide 29	protein-coding	0.005000	0.353234	
mm_155893.1	chrX	101652409	101652609	+	1	NA	NA	NA	12291	NM_001290535	108155	Mm.487332	NM_139144	ENSMUSG00000034160	Ogt	1110038P24Rik|4831420N21Rik|AI115525|Ogtl	O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)	protein-coding	0.010000	0.442786	
mm_118286.1	chr13	112874029	112874229	-	1	NA	NA	NA	53251	NM_028151	72198	Mm.291029	NM_028151	ENSMUSG00000016018	Skiv2l2	2610528A15Rik|mKIAA0052	superkiller viralicidic activity 2-like 2 (S. cerevisiae)	protein-coding	0.015000	0.333333	
mm_132763.1	chr16	44724238	44724438	+	1	NA	NA	NA	37	NM_145972	212547	Mm.310573	NM_145972	ENSMUSG00000036208	Nepro	-	nucleolus and neural progenitor protein	protein-coding	0.125000	0.771144	
mm_49244.1	chr6	17307542	17307742	+	1	NA	NA	NA	2	NM_001243064	12389	Mm.28278	NM_007616	ENSMUSG00000007655	Cav1	Cav|Cav-1	caveolin 1, caveolae protein	protein-coding	0.070000	0.676617	
mm_144143.1	chr18	4994614	4994814	+	1	NA	NA	NA	-51875	NM_153153	225115	Mm.136791	NM_153153	ENSMUSG00000024236	Svil	AU024053|B430302E16Rik	supervillin	protein-coding	0.020000	0.487562	
mm_83742.1	chr9	51101974	51102174	-	1	NA	NA	NA	4	NM_177702	235345	Mm.72828	NM_177702	ENSMUSG00000032057	4833427G06Rik	-	RIKEN cDNA 4833427G06 gene	protein-coding	0.050000	0.562189	
mm_150146.1	chr19	31881864	31882064	+	1	NA	NA	NA	13203	NM_001081074	69865	Mm.87538	NM_001081074	ENSMUSG00000052595	A1cf	1810073H04Rik|ACF64|ACF65|ASP|Acf|MCM|MerCreMer|Tg(Myh6-cre/Esr1*)1Jmk|mer	APOBEC1 complementation factor	protein-coding	0.010000	0.368159	
mm_24891.1	chr3	96161867	96162067	+	1	NA	NA	NA	-3	NM_181409	194126	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	0.015000	0.477612	-31(CTCCTTTAAGGG,-,0.00),-30(TCCTTTAAGGGG,+,0.00),-29(CCTTTAAGGGGC,+,0.00)
mm_29033.1	chr3	102167545	102167745	-	1	NA	NA	NA	37048	NM_177545	229658	Mm.118004	NM_177545	ENSMUSG00000027860	Vangl1	Kitenin|Lpp2|Stb2|Stbm	vang-like 1 (van gogh, Drosophila)	protein-coding	0.005000	0.467662	86(TCATTTAAAGGA,+,0.00)
mm_110860.1	chr12	73444776	73444976	-	1	NA	NA	NA	-35313	NR_046013	380765	Mm.490476	NR_046013		D830013O20Rik	Gm891	RIKEN cDNA D830013O20 gene	ncRNA	0.000000	0.398010	-82(CTTTAAAGAGGG,+,0.00)
mm_6941.1	chr1	85727093	85727293	-	1	NA	NA	NA	9413	NM_177055	319997	Mm.116691	NM_177055	ENSMUSG00000052760	A630001G21Rik	-	RIKEN cDNA A630001G21 gene	protein-coding	0.000000	0.338308	
mm_121988.1	chr14	26442597	26442797	-	1	NA	NA	NA	85150	NR_038005	71106	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.015000	0.457711	
mm_125760.1	chr15	73919916	73920116	+	1	NA	NA	NA	-80345	NM_001033365	268816	Mm.440635	NM_001033365	ENSMUSG00000072487	Mroh5	Gm628	maestro heat-like repeat family member 5	protein-coding	0.030000	0.527363	
mm_140222.1	chr17	83917840	83918040	+	1	NA	NA	NA	-71150	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.010000	0.527363	
mm_25070.1	chr3	99316396	99316596	+	1	NA	NA	NA	62736	NM_009323	21384	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0.010000	0.363184	
mm_141168.1	chr17	26532571	26532771	-	1	NA	NA	NA	-24199	NM_013642	19252	Mm.239041	NM_013642	ENSMUSG00000024190	Dusp1	3CH134|MKP1|Ptpn16|U19515|erp|mkp-1	dual specificity phosphatase 1	protein-coding	0.005000	0.522388	
mm_146726.1	chr18	15064362	15064562	-	1	NA	NA	NA	-880	NM_001142731	106931	Mm.329299	NM_134112	ENSMUSG00000036225	Kctd1	4933402K10Rik|AI661543|AW553000	potassium channel tetramerisation domain containing 1	protein-coding	0.035000	0.597015	
mm_151189.1	chr19	53424315	53424515	+	1	NA	NA	NA	-33842	NM_172429	76479	Mm.313687	NM_172429	ENSMUSG00000025024	Smndc1	2410004J23Rik|4933440I19Rik	survival motor neuron domain containing 1	protein-coding	0.025000	0.432836	
mm_129719.1	chr15	81936606	81936806	-	1	NA	NA	NA	-53	NM_145473	105859	Mm.22524	NM_145473	ENSMUSG00000042109	Csdc2	AI415250|AI481750|Pippin	cold shock domain containing C2, RNA binding	protein-coding	0.020000	0.547264	-17(GCTTAAAGGGAC,+,0.00)
mm_171000.1	chr2	75663479	75663679	+	1	NA	NA	NA	4289	NR_033513	627828	Mm.459502	NR_033513	ENSMUSG00000092086	Gm6793	EG627828	heterogeneous nuclear ribonucleoprotein A3 pseudogene	pseudo	0.000000	0.457711	
mm_17634.1	chr2	31100890	31101090	-	1	NA	NA	NA	-4490	NM_001177650	14269	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.030000	0.452736	
mm_46231.1	chr5	99215552	99215752	-	1	NA	NA	NA	37275	NM_181318	320292	Mm.259074	NM_145839	ENSMUSG00000089809	Rasgef1b	4732452O09Rik|GPIgamma4|Gpig4	RasGEF domain family, member 1B	protein-coding	0.005000	0.462687	
mm_129215.1	chr15	76522504	76522704	-	1	NA	NA	NA	-475	NM_130893	170729	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.080000	0.721393	-13(GGCTTTAAAAGC,-,0.00),-12(GCTTTAAAAGCC,+,0.00)
mm_57685.1	chr6	128512240	128512440	-	1	NA	NA	NA	14380	NM_007376	11287	Mm.260144	NM_007376	ENSMUSG00000030359	Pzp	A1m|A2m|AI893533|MAM	pregnancy zone protein	protein-coding	0.000000	0.383085	
mm_112667.1	chr13	16027248	16027448	+	1	NA	NA	NA	15497	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.000000	0.388060	
mm_104372.1	chr11	94360049	94360249	-	1	NA	NA	NA	32148	NM_146024	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.010000	0.378109	
mm_21772.1	chr2	164844670	164844870	-	1	NA	NA	NA	10997	NM_008906	19025	Mm.359633	NM_008906	ENSMUSG00000017760	Ctsa	AU019505|PPCA|Ppgb	cathepsin A	protein-coding	0.035000	0.582090	
mm_39580.1	chr5	23446605	23446805	+	1	NA	NA	NA	12276	NM_026984	69188	Mm.205190	NM_026984	ENSMUSG00000029004	Kmt2e	1810033J14Rik|9530077A04Rik|D230038D11Rik|Mll5|NKp44L	lysine (K)-specific methyltransferase 2E	protein-coding	0.000000	0.333333	
mm_3682.1	chr1	153723759	153723959	+	1	NA	NA	NA	13970	NR_046171	329271	Mm.384841	NR_046171	ENSMUSG00000100334	C230024C17Rik	C230024C17	RIKEN cDNA C230024C17 gene	ncRNA	0.035000	0.542289	
mm_114466.1	chr13	67744123	67744323	+	1	NA	NA	NA	10911	NM_001001130	22746	Mm.288396	NM_001001130	ENSMUSG00000058331	Zfp85	KRAB19|Rslcan2|Zfp71|Zfp85-rs1	zinc finger protein 85	protein-coding	0.035000	0.537313	
mm_45119.1	chr5	45823330	45823530	-	1	NA	NA	NA	33122	NM_172153	209707	Mm.71498	NM_172153	ENSMUSG00000015882	Lcorl	Mlr1	ligand dependent nuclear receptor corepressor-like	protein-coding	0.000000	0.447761	
mm_15994.1	chr2	167061197	167061397	+	1	NA	NA	NA	-1637	NR_138563	68949	Mm.391959	NM_001081005		Zfas1	1500012F01Rik|Zfos1	zinc finger, NFX1-type containing 1, antisense RNA 1	ncRNA	0.010000	0.457711	
mm_28952.1	chr3	100483536	100483736	-	1	NA	NA	NA	5556	NM_001142952	74645	Mm.226900	NM_001142952	ENSMUSG00000044468	Fam46c	4930431B09Rik|AI449797	family with sequence similarity 46, member C	protein-coding	0.000000	0.338308	
mm_161311.1	chr14	40948091	40948291	-	1	NA	NA	NA	18	NM_001316748	52588	Mm.28876	NM_145928	ENSMUSG00000037824	Tspan14	AA958793|D14Ertd226e|Tm4sf14|tspan-14	tetraspanin 14	protein-coding	0.010000	0.522388	
mm_146116.1	chr18	74283045	74283245	+	1	NA	NA	NA	45	NM_028948	74453	Mm.182293	NM_028948	ENSMUSG00000035394	Cfap53	4933415I03Rik|Ccdc11	cilia and flagella associated protein 53	protein-coding	0.040000	0.582090	
mm_59079.1	chr7	19628888	19629088	+	1	NA	NA	NA	450	NM_001290457	19698	Mm.1741	NM_009046	ENSMUSG00000002983	Relb	shep	avian reticuloendotheliosis viral (v-rel) oncogene related B	protein-coding	0.065000	0.656716	
mm_135799.1	chr16	57231255	57231455	-	1	NA	NA	NA	111	NM_026254	67581	Mm.257819	NM_026254	ENSMUSG00000022749	Tbc1d23	4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689	TBC1 domain family, member 23	protein-coding	0.055000	0.552239	
mm_146875.1	chr18	25479210	25479410	-	1	NA	NA	NA	274673	NM_133195	108013	Mm.266435	NM_133195	ENSMUSG00000024268	Celf4	A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik	CUGBP, Elav-like family member 4	protein-coding	0.030000	0.572139	60(AGCTATTTAGGG,-,0.00)
mm_111603.1	chr12	102368061	102368261	-	1	NA	NA	NA	71652	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.010000	0.537313	
mm_131165.1	chr16	7008930	7009130	+	1	NA	NA	NA	-60805	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.000000	0.412935	
mm_125736.1	chr15	73512483	73512683	+	1	NA	NA	NA	23	NM_001081066	105841	Mm.322557	NM_001081066	ENSMUSG00000036661	Dennd3	AI447457|E030003N15Rik	DENN/MADD domain containing 3	protein-coding	0.085000	0.731343	
mm_100234.1	chr11	117228645	117228845	+	1	NA	NA	NA	29084	NM_001113486	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.005000	0.363184	
mm_28963.1	chr3	100685783	100685983	-	1	NA	NA	NA	-410	NM_010763	17156	Mm.271617	NM_010763	ENSMUSG00000008763	Man1a2	AI428775|AI528764|AI854422|Man1b|PCR2	mannosidase, alpha, class 1A, member 2	protein-coding	0.155000	0.805970	
mm_169771.1	chr15	99905272	99905472	-	1	NA	NA	NA	26286	NM_028180	72277	Mm.272766	NM_028180	ENSMUSG00000045350	1700030F18Rik	FAM186A	RIKEN cDNA 1700030F18 gene	protein-coding	0.020000	0.487562	
mm_83605.1	chr9	48604913	48605113	-	1	NA	NA	NA	110	NM_001311062	18113	Mm.8362	NM_010924	ENSMUSG00000032271	Nnmt	-	nicotinamide N-methyltransferase	protein-coding	0.015000	0.512438	
mm_105336.1	chr11	102994219	102994419	-	1	NA	NA	NA	5602	NR_105896	102466988		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.015000	0.626866	
mm_107983.1	chr12	73039241	73039441	+	1	NA	NA	NA	7371	NM_009189	20471	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0.035000	0.567164	
mm_9220.1	chr1	171234239	171234439	-	1	NA	NA	NA	10	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.055000	0.641791	
mm_23909.1	chr3	83042371	83042571	+	1	NA	NA	NA	7392	NM_181849	110135	Mm.30063	NM_181849	ENSMUSG00000033831	Fgb	2510049G14Rik	fibrinogen beta chain	protein-coding	0.010000	0.507463	
mm_76631.1	chr8	91801859	91802059	-	1	NA	NA	NA	-305	NM_008393	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.080000	0.606965	
mm_7285.1	chr1	97721185	97721385	-	1	NA	NA	NA	48807	NM_173760	227399	Mm.220817	NM_173760	ENSMUSG00000040648	Ppip5k2	AW555814|Cfap160|D330021B20|Hisppd1|Vip2|mKIAA0433	diphosphoinositol pentakisphosphate kinase 2	protein-coding	0.015000	0.422886	
mm_44427.1	chr5	20945406	20945606	-	1	NA	NA	NA	-5483	NR_030699	320770	Mm.491217	NR_030699	ENSMUSG00000101013	A630072M18Rik	Aptr	RIKEN cDNA A630072M18 gene	ncRNA	0.020000	0.532338	35(GCTCATATAGAG,+,0.00)
mm_100315.1	chr11	117987200	117987400	+	1	NA	NA	NA	443	NM_133757	74451	Mm.28864	NM_133757	ENSMUSG00000017715	Pgs1	2610019F11Rik|4933424M23Rik|SAF	phosphatidylglycerophosphate synthase 1	protein-coding	0.060000	0.552239	
mm_166070.1	chr4	135612268	135612468	-	1	NA	NA	NA	-14287	NR_015613	73937	Mm.292326	NM_028688	ENSMUSG00000086788	1700029M20Rik	4930406E24Rik	RIKEN cDNA 1700029M20 gene	ncRNA	0.000000	0.482587	
mm_136457.1	chr16	94997646	94997846	-	1	NA	NA	NA	-50	NM_010606	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.125000	0.651741	
mm_100554.1	chr11	120722115	120722315	+	1	NA	NA	NA	747	NM_133223	170758	Mm.34008	NM_133223	ENSMUSG00000018012	Rac3	Rac1B	RAS-related C3 botulinum substrate 3	protein-coding	0.045000	0.592040	
mm_31829.1	chr4	70378051	70378251	+	1	NA	NA	NA	32284	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.035000	0.417910	
mm_70598.1	chr8	13292608	13292808	+	1	NA	NA	NA	-4582	NM_001042650	102323	Mm.368890	NM_001024504	ENSMUSG00000038506	Dcun1d2	AW495713|mFLJ10704	DCN1, defective in cullin neddylation 1, domain containing 2 (S. cerevisiae)	protein-coding	0.010000	0.462687	
mm_134530.1	chr16	19241603	19241803	-	1	NA	NA	NA	45038	NM_146451	258443	Mm.377506	NM_146451	ENSMUSG00000050742	Olfr164	MOR279-2	olfactory receptor 164	protein-coding	0.000000	0.422886	
mm_74278.1	chr8	125327783	125327983	+	1	NA	NA	NA	164827	NM_001081337	244668	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.020000	0.472637	-35(CCCTTTAAAATG,-,0.00),-34(CCTTTAAAATGC,+,0.00)
mm_109544.1	chr12	111678017	111678217	+	1	NA	NA	NA	12	NM_177374	328162	Mm.425747	NM_177374	ENSMUSG00000060950	Trmt61a	6720458F09Rik|AI606093|Gcd14|Trm61	tRNA methyltransferase 61A	protein-coding	0.095000	0.641791	
mm_148655.1	chr19	5494531	5494731	+	1	NA	NA	NA	4176	NM_007687	12631	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.005000	0.402985	
mm_41554.1	chr5	92961981	92962181	+	1	NA	NA	NA	64088	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.025000	0.587065	
mm_168991.1	chr12	99645171	99645371	+	1	NA	NA	NA	-17297	NR_045288	73457	Mm.383439	NR_045288	ENSMUSG00000100211	1700064M15Rik	-	RIKEN cDNA 1700064M15 gene	ncRNA	0.120000	0.661692	
mm_61785.1	chr7	83756421	83756621	+	1	NA	NA	NA	-21031	NM_010551	16170	Mm.10137	NM_010551	ENSMUSG00000001741	Il16	mKIAA4048	interleukin 16	protein-coding	0.010000	0.417910	
mm_58265.1	chr6	145340000	145340200	-	1	NA	NA	NA	-47525	NR_003625	381827	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	0.050000	0.557214	
mm_118754.1	chr14	22369220	22369420	+	1	NA	NA	NA	173478	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.005000	0.338308	5(CAGCATAAAAGA,-,0.00)
mm_140470.1	chr17	93199413	93199613	+	1	NA	NA	NA	345	NM_009625	11516	Mm.3407	NM_009625	ENSMUSG00000024256	Adcyap1	PACAP	adenylate cyclase activating polypeptide 1	protein-coding	0.045000	0.522388	
mm_95632.1	chr11	53631948	53632148	+	1	NA	NA	NA	2654	NM_008355	16163	Mm.1284	NM_008355	ENSMUSG00000020383	Il13	Il-13	interleukin 13	protein-coding	0.020000	0.512438	
mm_162417.1	chr1	88956177	88956377	+	1	NA	NA	NA	-59836	NR_040471	73475	Mm.491040	NR_040471	ENSMUSG00000099378	1700067G17Rik	-	RIKEN cDNA 1700067G17 gene	ncRNA	0.015000	0.457711	
mm_167953.1	chrX	140664237	140664437	+	1	NA	NA	NA	-13691	NM_011845	23947	Mm.131097	NM_011845	ENSMUSG00000000266	Mid2	FXY2|Trim1	midline 2	protein-coding	0.005000	0.472637	
mm_112590.1	chr13	13825357	13825557	+	1	NA	NA	NA	41150	NM_010317	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0.010000	0.472637	
mm_46606.1	chr5	107869064	107869264	-	1	NA	NA	NA	5943	NM_007964	14020	Mm.35796	NM_007964	ENSMUSG00000011831	Evi5	NB4S	ecotropic viral integration site 5	protein-coding	0.090000	0.671642	81(GGCTCTTTAAGG,-,0.00),83(CTCTTTAAGGCC,+,0.00)
mm_54876.1	chr6	42644988	42645188	-	1	NA	NA	NA	-47	NM_146174	232748	Mm.279659	NM_146174	ENSMUSG00000029851	Tcaf2	Fam115c	TRPM8 channel-associated factor 2	protein-coding	0.050000	0.572139	
mm_163626.1	chr13	56630788	56630988	+	1	NA	NA	NA	21285	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.015000	0.502488	
mm_1725.1	chr1	75367566	75367766	+	1	NA	NA	NA	7349	NR_037976	100503248	Mm.403916	NR_037976	ENSMUSG00000085653	Gm15179	OTTMUSG00000019417	predicted gene 15179	ncRNA	0.010000	0.582090	
mm_25923.1	chr3	131171614	131171814	+	1	NA	NA	NA	58923	NM_001276403	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.010000	0.572139	-21(GCATATAAACAC,+,0.00)
mm_66530.1	chr7	45136012	45136212	-	1	NA	NA	NA	320	NM_013520	14256	Mm.1658	NM_013520	ENSMUSG00000110206	Flt3l	Flt3lg|Ly72L	FMS-like tyrosine kinase 3 ligand	protein-coding	0.050000	0.676617	
mm_122611.1	chr14	51057553	51057753	-	1	NA	NA	NA	-411	NM_001011875	497106	Mm.379740	NM_001011875	ENSMUSG00000068407	Rnase12	Rai1	ribonuclease, RNase A family, 12 (non-active)	protein-coding	0.005000	0.497512	
mm_165142.1	chr2	15375477	15375677	+	1	NA	NA	NA	-150902	NM_001310455	102635496		NM_001310455	ENSMUSG00000075520	Malrd1	-	MAM and LDL receptor class A domain containing 1	protein-coding	0.005000	0.353234	
mm_7657.1	chr1	128359554	128359754	-	1	NA	NA	NA	51	NM_008567	17219	Mm.4933	NM_008567	ENSMUSG00000026355	Mcm6	ASP-l1|D1Wsu22e|Mcmd6	minichromosome maintenance complex component 6	protein-coding	0.115000	0.676617	
mm_5128.1	chr1	9636795	9636995	-	1	NA	NA	NA	-5803	NR_015470	72481	Mm.279818	NR_015470	ENSMUSG00000079671	2610203C22Rik	2310007M24Rik	RIKEN cDNA 2610203C22 gene	ncRNA	0.010000	0.467662	
mm_80549.1	chr9	82829922	82830122	+	1	NA	NA	NA	216	NM_022986	65099	Mm.41415	NM_022986	ENSMUSG00000032251	Irak1bp1	4921528N06Rik|AI851240|Aabp3|Aip70|Simpl	interleukin-1 receptor-associated kinase 1 binding protein 1	protein-coding	0.105000	0.661692	
mm_84508.1	chr9	67026725	67026925	-	1	NA	NA	NA	17046	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.010000	0.348259	
mm_4656.1	chr1	180345938	180346138	+	1	NA	NA	NA	-15489	NR_003623	277333	Mm.389223	NM_199472		Gm5069	EG277333	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.005000	0.368159	
mm_6116.1	chr1	64121220	64121420	-	1	NA	NA	NA	69	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.045000	0.557214	
mm_163845.1	chr14	19417996	19418196	+	1	NA	NA	NA	184491	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.010000	0.348259	
mm_25884.1	chr3	130873984	130874184	+	1	NA	NA	NA	-143686	NM_001005859	68436	Mm.140568	NM_026724	ENSMUSG00000062006	Rpl34	1100001I22Rik	ribosomal protein L34	protein-coding	0.015000	0.477612	
mm_7504.1	chr1	121567800	121568000	-	1	NA	NA	NA	80	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	0.095000	0.606965	
mm_18234.1	chr2	51972906	51973106	-	1	NA	NA	NA	202	NM_001141949	64685	Mm.7491	NM_019401	ENSMUSG00000026946	Nmi	-	N-myc (and STAT) interactor	protein-coding	0.060000	0.552239	
mm_79387.1	chr9	54772861	54773061	+	1	NA	NA	NA	8213	NM_013496	12903	Mm.34797	NM_013496	ENSMUSG00000032291	Crabp1	AI326249|CRABP-I|Crabp-1|CrabpI|Rbp-5	cellular retinoic acid binding protein I	protein-coding	0.020000	0.542289	
mm_169992.1	chr17	15576062	15576262	-	1	NA	NA	NA	-12839	NM_144809	213389	Mm.215162	NM_144809	ENSMUSG00000051977	Prdm9	BC012016|Dsbc1|G1-419-29|Meisetz|PRDM9-B|Rcr1|repro7	PR domain containing 9	protein-coding	0.015000	0.492537	
mm_155231.1	chrX	57200415	57200615	+	1	NA	NA	NA	-122	NR_038463	100502842	Mm.164733	NR_038463	ENSMUSG00000085808	Gm14718	OTTMUSG00000017790	predicted gene 14718	ncRNA	0.000000	0.417910	
mm_59946.1	chr7	30425461	30425661	+	1	NA	NA	NA	2257	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.050000	0.621891	
mm_129498.1	chr15	78851051	78851251	-	1	NA	NA	NA	4378	NM_025622	107753	Mm.390793	NM_025622	ENSMUSG00000043501	Lgals2	2200008F12Rik|AI324147	lectin, galactose-binding, soluble 2	protein-coding	0.015000	0.587065	
mm_165660.1	chr3	87906036	87906236	+	1	NA	NA	NA	-185	NM_008231	15191	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	hepatoma-derived growth factor	protein-coding	0.080000	0.721393	
mm_104833.1	chr11	99152159	99152359	-	1	NA	NA	NA	2818	NM_001301713	12775	Mm.2932	NM_007719	ENSMUSG00000037944	Ccr7	CC-CKR-7|CCR-7|CD197|Cdw197|Cmkbr7|EBI1|Ebi1h	chemokine (C-C motif) receptor 7	protein-coding	0.000000	0.492537	
mm_92366.1	chr10	75940558	75940758	-	1	NA	NA	NA	14	NM_001277132	333670	Mm.291320	NM_001037714	ENSMUSG00000050157	Gm867	Gm736	predicted gene 867	protein-coding	0.015000	0.552239	
mm_40109.1	chr5	34801272	34801472	+	1	NA	NA	NA	39632	NM_010414	15194	Mm.209071	NM_010414	ENSMUSG00000029104	Htt	AI256365|C430023I11Rik|Hd|Hdh|IT15	huntingtin	protein-coding	0.000000	0.363184	
mm_159725.1	chr5	38277123	38277323	+	1	NA	NA	NA	-181	NM_172709	21906	Mm.204765	NM_172709	ENSMUSG00000051596	Otop1	A530025J20Rik|Otp1|tlt	otopetrin 1	protein-coding	0.055000	0.716418	
mm_87088.1	chr10	31313350	31313550	+	1	NA	NA	NA	45	NM_027168	69692	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	0.065000	0.646766	
mm_104722.1	chr11	98179897	98180097	-	1	NA	NA	NA	12909	NM_013634	19014	Mm.12926	NM_013634	ENSMUSG00000018160	Med1	AI480703|CRSP210|DRIP205|PBP|Pparbp|TRAP220|l11Jus15	mediator complex subunit 1	protein-coding	0.000000	0.422886	
mm_159714.1	chr5	32611234	32611434	+	1	NA	NA	NA	163	NM_009535	22612	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	0.155000	0.771144	
mm_5738.1	chr1	45343396	45343596	-	1	NA	NA	NA	31958	NM_009930	12825	Mm.249555	NM_009930	ENSMUSG00000026043	Col3a1	AW550625|Col3a-1|Tsk-2|Tsk2	collagen, type III, alpha 1	protein-coding	0.030000	0.517413	
mm_54971.1	chr6	48738791	48738991	-	1	NA	NA	NA	-156	NM_175860	16205	Mm.252599	NM_008376	ENSMUSG00000090019	Gimap1	IAP38|Imap38|imap	GTPase, IMAP family member 1	protein-coding	0.010000	0.422886	-98(GCTTAAAGAGAC,+,0.00)
mm_77133.1	chr8	111347976	111348176	-	1	NA	NA	NA	-9871	NM_029005	74568	Mm.207971	NM_029005	ENSMUSG00000012519	Mlkl	9130019I15Rik	mixed lineage kinase domain-like	protein-coding	0.020000	0.552239	
mm_86169.1	chr9	119089219	119089419	-	1	NA	NA	NA	-1058	NM_001293648	18799	Mm.23963	NM_019676	ENSMUSG00000010660	Plcd1	AW212592|C79986	phospholipase C, delta 1	protein-coding	0.005000	0.338308	
mm_167743.1	chr9	108392703	108392903	+	1	NA	NA	NA	-31	NM_053216	112418	Mm.78287	NM_053216	ENSMUSG00000032611	1700102P08Rik	AI593206	RIKEN cDNA 1700102P08 gene	protein-coding	0.045000	0.592040	
mm_43529.1	chr5	137289861	137290061	+	1	NA	NA	NA	1707	NM_001290010	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.010000	0.547264	
mm_113476.1	chr13	36730004	36730204	+	1	NA	NA	NA	4373	NM_153529	68404	Mm.232930	NM_153529	ENSMUSG00000039114	Nrn1	0710008J23Rik|Cpg15|Nrn	neuritin 1	protein-coding	0.035000	0.557214	
mm_171012.1	chr2	83557274	83557474	+	1	NA	NA	NA	-87204	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.065000	0.651741	
mm_33818.1	chr4	135357630	135357830	+	1	NA	NA	NA	-4516	NM_001130477	51796	Mm.1963	NM_016799	ENSMUSG00000028809	Srrm1	AA407769|POP101|Srm160	serine/arginine repetitive matrix 1	protein-coding	0.015000	0.502488	
mm_154971.1	chrX	37172345	37172545	+	1	NA	NA	NA	-3603	NM_001033785	434756	Mm.471848	NM_001033785	ENSMUSG00000036551	Akap14	-	A kinase (PRKA) anchor protein 14	protein-coding	0.015000	0.477612	-33(GGGTATAAAAAG,-,0.00),9(GCTTATAGAGCT,+,0.00)
mm_101158.1	chr11	16972743	16972943	-	1	NA	NA	NA	21433	NM_176982	319701	Mm.120672	NM_176982	ENSMUSG00000044966	Fbxo48	A630050E13Rik	F-box protein 48	protein-coding	0.005000	0.363184	-61(CTATTTATAGAC,+,0.00)
mm_130893.1	chr15	102366264	102366464	-	1	NA	NA	NA	-93	NM_130458	170574	Mm.263284	NM_130458	ENSMUSG00000060284	Sp7	6430578P22Rik|C22|Osx	Sp7 transcription factor 7	protein-coding	0.020000	0.577114	
mm_157609.1	chrX	53775383	53775583	-	1	NA	NA	NA	911	NM_001009549	333473	Mm.327378	NM_001009549	ENSMUSG00000059334	Zfp36l3	AY661338	zinc finger protein 36, C3H type-like 3	protein-coding	0.050000	0.606965	
mm_117611.1	chr13	91370858	91371058	-	1	NA	NA	NA	17127	NR_045161	320297	Mm.375866	NR_045161	ENSMUSG00000097182	A830009L08Rik	-	RIKEN cDNA A830009L08 gene	ncRNA	0.060000	0.552239	
mm_39969.1	chr5	32156342	32156542	+	1	NA	NA	NA	19970	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.000000	0.482587	57(CTTTTTAAACTG,+,0.00)
mm_116993.1	chr13	56548343	56548543	-	1	NA	NA	NA	95	NM_010702	16841	Mm.16973	NM_010702	ENSMUSG00000021539	Lect2	-	leukocyte cell-derived chemotaxin 2	protein-coding	0.020000	0.462687	
mm_127510.1	chr15	101690373	101690573	+	1	NA	NA	NA	3832	NM_008476	16687	Mm.302399	NM_008476	ENSMUSG00000058354	Krt6a	2310016L08Rik|Krt2-6a|Krt2-6c|MK6a|mK6[a]	keratin 6A	protein-coding	0.015000	0.572139	
mm_17744.1	chr2	32713136	32713336	-	1	NA	NA	NA	-264	NR_039536	100628606		NR_039536	ENSMUSG00000105841	Mir3960	mmu-mir-3960	microRNA 3960	ncRNA	0.070000	0.751244	-32(CCCTTTATAACG,+,0.00)
mm_147585.1	chr18	56505495	56505695	-	1	NA	NA	NA	-32544	NR_106160	102465790		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	0.025000	0.517413	
mm_39092.1	chr4	154667766	154667966	-	1	NA	NA	NA	1	NM_028513	73353	Mm.30958	NM_028513	ENSMUSG00000051276	Actrt2	1700052K15Rik|Arp-T2|Arpm2	actin-related protein T2	protein-coding	0.010000	0.562189	-34(CCCTTGAAAAGG,-,0.00)
mm_131840.1	chr16	22960958	22961158	+	1	NA	NA	NA	9986	NM_053176	94175	Mm.358794	NM_053176	ENSMUSG00000022877	Hrg	AI265597|AW413091|D16jh2|D18020|Hprg|Hrgp	histidine-rich glycoprotein	protein-coding	0.025000	0.567164	
mm_113653.1	chr13	42307162	42307362	+	1	NA	NA	NA	5786	NM_010104	13614	Mm.14543	NM_010104	ENSMUSG00000021367	Edn1	ET-1|PPET1|preproET	endothelin 1	protein-coding	0.020000	0.462687	
mm_172119.1	chr6	3201061	3201261	+	1	NA	NA	NA	-87358	NR_036696	667335	Mm.380219	NR_036696	ENSMUSG00000106779	Gm8579	EG667335	spermatogenesis associated glutamate (E)-rich protein 4a pseudogene	pseudo	0.095000	0.597015	
mm_101957.1	chr11	50298133	50298333	-	1	NA	NA	NA	-5897	NM_175334	103806	Mm.51116	NM_175334	ENSMUSG00000050567	Maml1	AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200	mastermind like 1 (Drosophila)	protein-coding	0.010000	0.432836	
mm_912.1	chr1	54926073	54926273	+	1	NA	NA	NA	214	NM_001081433	329154	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.140000	0.731343	
mm_6853.1	chr1	84257426	84257626	-	1	NA	NA	NA	27119	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4	phosphotyrosine interaction domain containing 1	protein-coding	0.000000	0.422886	
mm_12801.1	chr2	79786465	79786665	+	1	NA	NA	NA	78785	NM_001290743	75276	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory (inhibitor) subunit 1C	protein-coding	0.025000	0.542289	
mm_44188.1	chr5	151406406	151406606	+	1	NA	NA	NA	2	NR_131166	100042166	Mm.443286	NR_131166	ENSMUSG00000097321	Gm3704	-	predicted gene 3704	ncRNA	0.020000	0.398010	
mm_58797.1	chr7	16175298	16175498	+	1	NA	NA	NA	3	NR_102730	17537	Mm.360516	NM_008627	ENSMUSG00000041420	Meis3	AI573393|Mrg2	Meis homeobox 3	protein-coding	0.115000	0.731343	
mm_145255.1	chr18	52528705	52528905	+	1	NA	NA	NA	916	NM_001286181	16948	Mm.172	NM_010728	ENSMUSG00000024529	Lox	AI893619|TSC-160|rrg	lysyl oxidase	protein-coding	0.070000	0.582090	
mm_167087.1	chr7	103706338	103706538	+	1	NA	NA	NA	-10158	NM_001025386	436002	Mm.389933	NM_001025386	ENSMUSG00000094822	Olfr243	MOR22-4|Olfr243-ps1|Olfr627|Olfr627-ps1	olfactory receptor 243	protein-coding	0.030000	0.467662	-69(GGTTATATAAGG,-,0.00)
mm_11958.1	chr2	53103632	53103832	+	1	NA	NA	NA	87455	NM_018785	56194	Mm.257474	NM_018785	ENSMUSG00000061136	Prpf40a	2810012K09Rik|FBP-11|FBP11|Fnbp11|Fnbp3	pre-mRNA processing factor 40A	protein-coding	0.015000	0.467662	
mm_159123.1	chr2	70562174	70562374	+	1	NA	NA	NA	145	NM_008077	14415	Mm.272120	NM_008077	ENSMUSG00000070880	Gad1	EP10|Gad-1	glutamate decarboxylase 1	protein-coding	0.085000	0.676617	
mm_123701.1	chr14	69724672	69724872	-	1	NA	NA	NA	7798	NM_134078	105513	Mm.159637	NM_134078	ENSMUSG00000034190	Chmp7	4930596K11Rik|6330407G04Rik|AI450338|AW550775	charged multivesicular body protein 7	protein-coding	0.005000	0.353234	
mm_78051.1	chr9	14784548	14784748	+	1	NA	NA	NA	-6	NM_001310728	17535	Mm.149071	NM_018736	ENSMUSG00000031928	Mre11a	Mre11|Mre11b	MRE11A homolog A, double strand break repair nuclease	protein-coding	0.065000	0.552239	
mm_70712.1	chr8	15060192	15060392	+	1	NA	NA	NA	2639	NM_008664	17930	Mm.272115	NM_008664	ENSMUSG00000031461	Myom2	AW146149	myomesin 2	protein-coding	0.020000	0.522388	
mm_29144.1	chr3	105932506	105932706	-	1	NA	NA	NA	58	NM_001033780	433638	Mm.239081	NM_001033780	ENSMUSG00000074342	I830077J02Rik	-	RIKEN cDNA I830077J02 gene	protein-coding	0.015000	0.412935	
mm_35645.1	chr4	43523363	43523563	-	1	NA	NA	NA	91	NM_009416	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.055000	0.676617	-31(CCTTTTAGGCGC,+,0.00)
mm_156338.1	chrX	139009828	139010028	+	1	NA	NA	NA	75308	NM_177920	331535	Mm.211704	NM_177920	ENSMUSG00000031271	Serpina7	C730040N12Rik|Tbg	serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7	protein-coding	0.005000	0.363184	
mm_22056.1	chr2	168571336	168571536	-	1	NA	NA	NA	18929	NM_001291178	18019	Mm.116802	NM_010899	ENSMUSG00000027544	Nfatc2	AI607462|NF-ATc2|NF-ATp|NFAT1|NFAT1-D|Nfatp	nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2	protein-coding	0.075000	0.681592	
mm_45102.1	chr5	44776580	44776780	-	1	NA	NA	NA	23066	NM_001347349	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0.005000	0.313433	
mm_62417.1	chr7	101320532	101320732	+	1	NA	NA	NA	-687	NM_019990	56018	Mm.28896	NM_019990	ENSMUSG00000030688	Stard10	AV048538|CGI-52|NY-C0-28|PC-TP2|PCTP2|Pctpl|Sdccag28|SdccagG28|TISP-81	START domain containing 10	protein-coding	0.015000	0.487562	-34(GCCTTTAAAGTC,+,0.00),-33(CCTTTAAAGTCG,+,0.00)
mm_22291.1	chr2	180236515	180236715	-	1	NA	NA	NA	-10756	NM_001081171	16776	Mm.4339	NM_001081171	ENSMUSG00000015647	Lama5	AA408760|AA408762|AI853660|[a]5|laminin-511|mKIAA0533	laminin, alpha 5	protein-coding	0.000000	0.492537	
mm_155358.1	chrX	70184560	70184760	+	1	NA	NA	NA	-41072	NR_033213	74305	Mm.410860	NR_033213	ENSMUSG00000100511	1700111N16Rik	-	RIKEN cDNA 1700111N16 gene	ncRNA	0.000000	0.467662	
mm_93366.1	chr10	104127260	104127460	-	1	NA	NA	NA	-15627	NM_001270898	100861880	Mm.441727	NM_001270898	ENSMUSG00000091779	Gm21293	-	predicted gene, 21293	protein-coding	0.010000	0.557214	-38(GCTTTTATGAAG,+,0.00)
mm_131807.1	chr16	22918162	22918362	+	1	NA	NA	NA	-120	NM_001083905	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.015000	0.457711	86(AGATATAAAAGG,-,0.00)
mm_170814.1	chr2	176226472	176226672	+	1	NA	NA	NA	7	NR_130970	102639598	Mm.379980	NM_029813	ENSMUSG00000074527	Gm14296	-	predicted gene 14296	protein-coding	0.005000	0.507463	
mm_106921.1	chr12	8313359	8313559	+	1	NA	NA	NA	26	NM_021429	58240	Mm.309954	NM_021429	ENSMUSG00000020605	Hs1bp3	-	HCLS1 binding protein 3	protein-coding	0.120000	0.726368	
mm_166624.1	chr6	72970381	72970581	+	1	NA	NA	NA	-11733	NM_001190327	19240	Mm.3532	NM_025284	ENSMUSG00000079523	Tmsb10	Ptmb10|Tb10	thymosin, beta 10	protein-coding	0.015000	0.477612	
mm_104003.1	chr11	84916147	84916347	-	1	NA	NA	NA	109	NM_001005223	448850	Mm.379733	NM_001005223	ENSMUSG00000020526	Znhit3	Myohd1|Trip3	zinc finger, HIT type 3	protein-coding	0.100000	0.651741	
mm_116088.1	chr13	28652604	28652804	-	1	NA	NA	NA	58169	NR_105787	102466635		NR_105787	ENSMUSG00000099158	Mir6368	Gm27800|mmu-mir-6368	microRNA 6368	ncRNA	0.015000	0.402985	
mm_140972.1	chr17	24696029	24696229	-	1	NA	NA	NA	27	NM_023040	11692	Mm.28124	NM_023040	ENSMUSG00000040888	Gfer	Alr|ERV1	growth factor, erv1 (S. cerevisiae)-like (augmenter of liver regeneration)	protein-coding	0.150000	0.815920	
mm_57550.1	chr6	126740554	126740754	-	1	NA	NA	NA	20	NM_013568	16494	Mm.62535	NM_013568	ENSMUSG00000038077	Kcna6	Kv1.6|MK1.6	potassium voltage-gated channel, shaker-related, subfamily, member 6	protein-coding	0.015000	0.641791	
mm_12850.1	chr2	83644487	83644687	+	1	NA	NA	NA	9	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.140000	0.731343	
mm_65452.1	chr7	25412771	25412971	-	1	NA	NA	NA	15	NM_153576	232983	Mm.10545	NM_153576	ENSMUSG00000060188	Cxcl17	VCC-1|Vcc1	chemokine (C-X-C motif) ligand 17	protein-coding	0.010000	0.457711	64(GCCTTTAAGAAC,-,0.00),65(CCTTTAAGAACC,+,0.00)
mm_145273.1	chr18	52800131	52800331	+	1	NA	NA	NA	32087	NM_001199154	67847	Mm.292168	NM_026408	ENSMUSG00000024534	Sncaip	2810407O15Rik|4933427B05Rik|BB104594|SYPH1	synuclein, alpha interacting protein (synphilin)	protein-coding	0.010000	0.492537	
mm_57621.1	chr6	128215153	128215353	-	1	NA	NA	NA	-31450	NR_077223	330427	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	0.015000	0.462687	
mm_132838.1	chr16	45610346	45610546	+	1	NA	NA	NA	6	NM_001159297	14525	Mm.4799	NM_008099	ENSMUSG00000022659	Gcsam	Gcet|Gcet2|M17|M17-L	germinal center associated, signaling and motility	protein-coding	0.015000	0.572139	
mm_170842.1	chr2	177324267	177324467	-	1	NA	NA	NA	-140375	NM_001177568	628308	Mm.460436	NM_001177568	ENSMUSG00000078866	Zfp970	Gm14420|OTTMUSG00000016588	zinc finger protein 970	protein-coding	0.005000	0.492537	
mm_44692.1	chr5	30232247	30232447	-	1	NA	NA	NA	-234	NM_027652	28042	Mm.168854	NM_027652	ENSMUSG00000075703	Selenoi	4933402G07Rik|AI448296|AI452230|C79563|D5Wsu178e|Ept1|SELI|mKIAA1724	selenoprotein I	protein-coding	0.045000	0.567164	
mm_84332.1	chr9	64021955	64022155	-	1	NA	NA	NA	4	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.070000	0.562189	-74(CCTTTAAGAGTT,+,0.00)
mm_132383.1	chr16	34926091	34926291	+	1	NA	NA	NA	13138	NR_040536	76649	Mm.420532	NR_040536	ENSMUSG00000100593	1700119H24Rik	-	RIKEN cDNA 1700119H24 gene	ncRNA	0.005000	0.572139	
mm_110250.1	chr12	31559884	31560084	-	1	NA	NA	NA	-15	NM_011867	23985	Mm.100187	NM_011867	ENSMUSG00000020651	Slc26a4	Pds|pendrin	solute carrier family 26, member 4	protein-coding	0.035000	0.527363	-34(AGCTATAAAGGC,-,0.00)
mm_27318.1	chr3	50366821	50367021	-	1	NA	NA	NA	76692	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.000000	0.383085	-47(CCCTTAATAACC,+,0.00)
mm_13047.1	chr2	91096744	91096944	+	1	NA	NA	NA	166	NM_011355	20375	Mm.1302	NM_011355	ENSMUSG00000002111	Spi1	Dis-1|Dis1|PU.1|Sfpi-1|Sfpi1|Spi-1|Tcfpu1|Tfpu.1	spleen focus forming virus (SFFV) proviral integration oncogene	protein-coding	0.040000	0.646766	
mm_986.1	chr1	58505049	58505249	+	1	NA	NA	NA	-40	NM_008765	18393	Mm.3411	NM_008765	ENSMUSG00000026037	Orc2	AU041563|Orc2l	origin recognition complex, subunit 2	protein-coding	0.065000	0.562189	
mm_112206.1	chr12	113426866	113427066	-	1	NA	NA	NA	-62599	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.010000	0.412935	-82(CTTTTTCAAGAC,+,0.00)
mm_96389.1	chr11	67249162	67249362	+	1	NA	NA	NA	11450	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.015000	0.427861	
mm_106335.1	chr11	118392954	118393154	-	1	NA	NA	NA	8877	NM_011150	19039	Mm.3152	NM_011150	ENSMUSG00000033880	Lgals3bp	90K|CyCAP|MAC-2BP|Ppicap|Tango10b	lectin, galactoside-binding, soluble, 3 binding protein	protein-coding	0.020000	0.562189	
mm_71676.1	chr8	60864439	60864639	+	1	NA	NA	NA	-25912	NM_028299	72612	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.010000	0.407960	
mm_103133.1	chr11	70237545	70237745	-	1	NA	NA	NA	269	NM_001177601	104457	Mm.30016	NM_026757	ENSMUSG00000020831	0610010K14Rik	1110020A23Rik|AL033328|AU045833|Bap18	RIKEN cDNA 0610010K14 gene	protein-coding	0.115000	0.746269	
mm_145761.1	chr18	64888898	64889098	+	1	NA	NA	NA	1242	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.055000	0.601990	
mm_62991.1	chr7	120552949	120553149	+	1	NA	NA	NA	-44576	NR_024324	78552	Mm.289190	NR_024324	ENSMUSG00000044141	E130201H02Rik	-	Y box protein 1 pseudogene	pseudo	0.025000	0.522388	
mm_71678.1	chr8	60890294	60890494	+	1	NA	NA	NA	-57	NM_028299	72612	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.105000	0.696517	
mm_15304.1	chr2	155386844	155387044	+	1	NA	NA	NA	5088	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.010000	0.542289	
mm_93560.1	chr10	116473802	116474002	-	1	NA	NA	NA	-379	NM_021452	58802	Mm.440652	NM_021452	ENSMUSG00000054934	Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding	0.190000	0.860697	
mm_7153.1	chr1	91413099	91413299	-	1	NA	NA	NA	23	NM_019479	55927	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	0.090000	0.646766	
mm_43101.1	chr5	124483043	124483243	+	1	NA	NA	NA	-12	NM_029532	76167	Mm.156035	NM_029532	ENSMUSG00000029402	Snrnp35	6330548G22Rik	small nuclear ribonucleoprotein 35 (U11/U12)	protein-coding	0.075000	0.462687	
mm_154495.1	chrM	11171	11371	-	1	NA	NA	NA	NA	NA									0.015000	0.358209	37(GGCTATAAGTGG,-,0.00)
mm_75266.1	chr8	40653602	40653802	-	1	NA	NA	NA	-18910	NM_001040699	54384	Mm.294871	NM_019433	ENSMUSG00000039431	Mtmr7	-	myotubularin related protein 7	protein-coding	0.015000	0.393035	32(TCTCTTAGAGGC,+,0.00)
mm_10926.1	chr2	25428624	25428824	+	1	NA	NA	NA	50	NM_007379	11305	Mm.2210	NM_007379	ENSMUSG00000026944	Abca2	AI413825|Abc2|D2H0S1474E|mKIAA1062	ATP-binding cassette, sub-family A (ABC1), member 2	protein-coding	0.145000	0.776119	
mm_66996.1	chr7	64392101	64392301	-	1	NA	NA	NA	35	NM_026483	67973	Mm.26973	NM_026483	ENSMUSG00000030521	Mphosph10	2810453H10Rik|5730405D16Rik|AI326008	M-phase phosphoprotein 10 (U3 small nucleolar ribonucleoprotein)	protein-coding	0.095000	0.592040	
mm_2645.1	chr1	125435899	125436099	+	1	NA	NA	NA	-272	NM_001205386	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.050000	0.567164	
mm_28787.1	chr3	95995697	95995897	-	1	NA	NA	NA	42	NM_023320	67220	Mm.458147	NM_023320	ENSMUSG00000015745	Plekho1	2810052M02Rik|CKIP-1|Ckip1|JZA-20|Jza2	pleckstrin homology domain containing, family O member 1	protein-coding	0.145000	0.796020	
mm_127552.1	chr15	102150288	102150488	+	1	NA	NA	NA	-187	NM_146064	223920	Mm.358862	NM_146064	ENSMUSG00000023045	Soat2	ACAT2|D15Wsu97e	sterol O-acyltransferase 2	protein-coding	0.015000	0.507463	
mm_18688.1	chr2	71511187	71511387	-	1	NA	NA	NA	-18158	NM_010053	13390	Mm.475101	NM_010053	ENSMUSG00000041911	Dlx1	Dlx|Dlx-1	distal-less homeobox 1	protein-coding	0.015000	0.442786	
mm_16308.1	chr2	174294661	174294861	+	1	NA	NA	NA	675	NR_002846	56802	Mm.125770	NR_002846	ENSMUSG00000086537	Nespas	Gnas-as|Nespos	neuroendocrine secretory protein antisense	ncRNA	0.020000	0.522388	
mm_10957.1	chr2	25676691	25676891	+	1	NA	NA	NA	5	NM_001276448	620709	Mm.99499	NM_177840	ENSMUSG00000045684	Lcn6	9230101D24Rik	lipocalin 6	protein-coding	0.005000	0.482587	
mm_29442.1	chr3	110143471	110143671	-	1	NA	NA	NA	-99	NM_030699	80883	Mm.39262	NM_030699	ENSMUSG00000059857	Ntng1	A930010C08Rik|AI853992|Lmnt1	netrin G1	protein-coding	0.105000	0.621891	
mm_128675.1	chr15	60187346	60187546	-	1	NA	NA	NA	-170828	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.005000	0.427861	5(TTCTTTAAAAGA,-,0.00),6(TCTTTAAAAGAC,+,0.00)
mm_95331.1	chr11	46750501	46750701	+	1	NA	NA	NA	90	NM_001166631	171283	Mm.17771	NM_134248	ENSMUSG00000040405	Havcr1	AI503787|KIM-1|TIM-1|Tim1|Timd1	hepatitis A virus cellular receptor 1	protein-coding	0.005000	0.407960	-65(GGGCTTAAAAGT,-,0.00)
mm_39423.1	chr5	15990997	15991197	+	1	NA	NA	NA	56406	NM_001110844	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.005000	0.293532	
mm_92996.1	chr10	86705362	86705562	-	1	NA	NA	NA	-18	NM_011631	22027	Mm.87773	NM_011631	ENSMUSG00000020048	Hsp90b1	ERp99|GRP94|TA-3|Targ2|Tra-1|Tra1|endoplasmin|gp96	heat shock protein 90, beta (Grp94), member 1	protein-coding	0.100000	0.661692	
mm_81047.1	chr9	105483057	105483257	+	1	NA	NA	NA	11976	NM_175025	235574	Mm.326247	NM_175025	ENSMUSG00000032570	Atp2c1	1700121J11Rik|ATP2C1A|AW061228|BCPM|D930003G21Rik|HHD|SPCA|pmr1	ATPase, Ca++-sequestering	protein-coding	0.000000	0.333333	-31(CTCTTTAAAAGC,-,0.00),-30(TCTTTAAAAGCC,+,0.00)
mm_140977.1	chr17	24696477	24696677	-	1	NA	NA	NA	343	NM_027988	71893	Mm.390971	NM_027988	ENSMUSG00000019320	Noxo1	2310034C04Rik|P41NOX|P41NOXA|P41NOXB|P41NOXC|Snx28|hslt	NADPH oxidase organizer 1	protein-coding	0.065000	0.587065	
mm_30021.1	chr3	135665303	135665503	-	1	NA	NA	NA	26144	NM_008689	18033	Mm.256765	NM_008689	ENSMUSG00000028163	Nfkb1	NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105	nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105	protein-coding	0.015000	0.398010	-14(GCTTTTAAGGAT,+,0.00)
mm_22872.1	chr3	29109704	29109904	+	1	NA	NA	NA	27227	NM_029412	75740	Mm.330948	NM_029412	ENSMUSG00000063600	Egfem1	6130401L20Rik|Efcab11	EGF-like and EMI domain containing 1	protein-coding	0.000000	0.313433	
mm_58897.1	chr7	17150123	17150323	+	1	NA	NA	NA	-177	NM_054059	384557	Mm.486145	NM_054059	ENSMUSG00000053228	Ceacam3	EG384557|Psg24|cea12	carcinoembryonic antigen-related cell adhesion molecule 3	protein-coding	0.000000	0.557214	
mm_8732.1	chr1	160153444	160153644	-	1	NA	NA	NA	31	NM_177839	329278	Mm.90140	NM_177839	ENSMUSG00000026725	Tnn	Tnw|tenascin-W	tenascin N	protein-coding	0.020000	0.547264	
mm_153366.1	chr19	40271683	40271883	-	1	NA	NA	NA	-167	NM_016861	54132	Mm.5567	NM_016861	ENSMUSG00000055044	Pdlim1	CLP36|Clim1|mClim1	PDZ and LIM domain 1 (elfin)	protein-coding	0.055000	0.582090	
mm_45608.1	chr5	75119646	75119846	-	1	NA	NA	NA	9425	NR_045792	100503184	Mm.386273	NR_045792	ENSMUSG00000107192	Gm19583	-	predicted gene, 19583	ncRNA	0.005000	0.512438	
mm_97794.1	chr11	82911220	82911420	+	1	NA	NA	NA	67	NM_178680	217012	Mm.295205	NM_178680	ENSMUSG00000018845	Unc45b	AA445617|Cmya4|D230041A13Rik|Unc45	unc-45 myosin chaperone B	protein-coding	0.010000	0.577114	
mm_107639.1	chr12	52503670	52503870	+	1	NA	NA	NA	-12307	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0.135000	0.771144	
mm_79488.1	chr9	57071936	57072136	+	1	NA	NA	NA	-4	NM_001110351	20466	Mm.15755	NM_011378	ENSMUSG00000042557	Sin3a	AW553200|Sin3|mKIAA4126|mSin3A	transcriptional regulator, SIN3A (yeast)	protein-coding	0.045000	0.527363	
mm_11653.1	chr2	34963111	34963311	+	1	NA	NA	NA	-1439	NM_001326601	22029	Mm.239514	NM_009421	ENSMUSG00000026875	Traf1	4732496E14Rik	TNF receptor-associated factor 1	protein-coding	0.025000	0.462687	
mm_42875.1	chr5	122240943	122241143	+	1	NA	NA	NA	23417	NR_104441	654470	Mm.28804	NM_001039153	ENSMUSG00000038593	Tctn1	G730031O11Rik|Tect1	tectonic family member 1	protein-coding	0.010000	0.522388	
mm_105754.1	chr11	109473003	109473203	-	1	NA	NA	NA	126	NM_134038	104681	Mm.265874	NM_134038	ENSMUSG00000041920	Slc16a6	AW743111|ESTM12|MCT 6|MCT 7|MCT6	solute carrier family 16 (monocarboxylic acid transporters), member 6	protein-coding	0.075000	0.671642	85(CGGTTTATAAGA,-,0.00)
mm_55173.1	chr6	51921243	51921443	-	1	NA	NA	NA	91206	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.025000	0.417910	
mm_62675.1	chr7	109439134	109439334	+	1	NA	NA	NA	-181	NM_054103	117229	Mm.389950	NM_054103	ENSMUSG00000031027	Stk33	4921505G21Rik|AW061264	serine/threonine kinase 33	protein-coding	0.120000	0.671642	
mm_90265.1	chr10	122678688	122678888	+	1	NA	NA	NA	26	NM_001110218	319468	Mm.489703	NM_176919	ENSMUSG00000034613	Ppm1h	A430075L18Rik|ARHCL1|C030002B11Rik	protein phosphatase 1H (PP2C domain containing)	protein-coding	0.105000	0.726368	
mm_31552.1	chr4	56743322	56743522	+	1	NA	NA	NA	0	NM_009611	11470	Mm.30959	NM_009611	ENSMUSG00000070979	Actl7a	Tact2	actin-like 7a	protein-coding	0.005000	0.482587	
mm_108495.1	chr12	83688086	83688286	+	1	NA	NA	NA	-377	NM_008943	19164	Mm.998	NM_008943	ENSMUSG00000019969	Psen1	Ad3h|PS-1|PS1|S182	presenilin 1	protein-coding	0.135000	0.711443	
mm_54866.1	chr6	42597571	42597771	-	1	NA	NA	NA	-299	NM_203396	403088	Mm.354652	NM_203396	ENSMUSG00000018656	Tcaf3	Eapa2|Fam115e	TRPM8 channel-associated factor 3	protein-coding	0.015000	0.407960	
mm_115191.1	chr13	108775050	108775250	+	1	NA	NA	NA	120973	NM_011056	238871	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	0.000000	0.532338	
mm_33675.1	chr4	133220819	133221019	+	1	NA	NA	NA	110	NM_027152	69655	Mm.285685	NM_027152	ENSMUSG00000028865	Cd164l2	2310047N01Rik	CD164 sialomucin-like 2	protein-coding	0.095000	0.711443	
mm_42512.1	chr5	115542890	115543090	+	1	NA	NA	NA	-16477	NM_007475	11837	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.020000	0.562189	
mm_17727.1	chr2	32431047	32431247	-	1	NA	NA	NA	4	NM_001164358	227731	Mm.37395	NM_146118	ENSMUSG00000026819	Slc25a25	1110030N17Rik|MCSC|mKIAA1896	solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 25	protein-coding	0.040000	0.517413	
mm_86814.1	chr10	20505675	20505875	+	1	NA	NA	NA	42553	NM_001347366	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.025000	0.492537	
mm_38133.1	chr4	134703660	134703860	-	1	NA	NA	NA	530	NM_207237	230815	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.170000	0.830846	
mm_172908.1	chr9	61913276	61913476	+	1	NA	NA	NA	1134	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.030000	0.557214	
mm_108004.1	chr12	73584140	73584340	+	1	NA	NA	NA	-556	NM_001313977	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.025000	0.557214	
mm_122441.1	chr14	45270101	45270301	-	1	NA	NA	NA	48371	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.005000	0.343284	
mm_52355.1	chr6	112459588	112459788	+	1	NA	NA	NA	183	NM_007617	12391	Mm.3924	NM_007617	ENSMUSG00000062694	Cav3	AI385751|Cav-3|M-cav	caveolin 3	protein-coding	0.035000	0.567164	
mm_13916.1	chr2	120567607	120567807	+	1	NA	NA	NA	36	NM_009222	20619	Mm.245715	NM_009222	ENSMUSG00000027287	Snap23	23kDa|AA408749|SNAP-23|Sndt|Syndet	synaptosomal-associated protein 23	protein-coding	0.095000	0.671642	
mm_80757.1	chr9	95557132	95557332	+	1	NA	NA	NA	-2585	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.025000	0.472637	
mm_28726.1	chr3	95701919	95702119	-	1	NA	NA	NA	-14102	NM_001301705	229595	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.050000	0.611940	
mm_144689.1	chr18	34840507	34840707	+	1	NA	NA	NA	18	NM_144865	225362	Mm.293588	NM_144865	ENSMUSG00000038555	Reep2	-	receptor accessory protein 2	protein-coding	0.100000	0.721393	-32(CCCTTTAAGAGG,-,0.00),-31(CCTTTAAGAGGC,+,0.00)
mm_66614.1	chr7	45466724	45466924	-	1	NA	NA	NA	74	NM_007527	12028	Mm.19904	NM_007527	ENSMUSG00000003873	Bax	-	BCL2-associated X protein	protein-coding	0.130000	0.721393	
mm_28317.1	chr3	89279515	89279715	-	1	NA	NA	NA	30	NM_010107	13636	Mm.15675	NM_010107	ENSMUSG00000027954	Efna1	AI325262|B61|Efl1|Epl1|Eplg1|Lerk1	ephrin A1	protein-coding	0.085000	0.666667	
mm_67116.1	chr7	70361439	70361639	-	1	NA	NA	NA	-946	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.085000	0.606965	
mm_144110.1	chr18	4352967	4353167	+	1	NA	NA	NA	-114	NM_007746	26410	Mm.3275	NM_007746	ENSMUSG00000024235	Map3k8	Cot|Cot/Tpl2|Est|Estf|Tpl-2|Tpl2|c-COT	mitogen-activated protein kinase kinase kinase 8	protein-coding	0.060000	0.621891	
mm_42037.1	chr5	108397511	108397711	+	1	NA	NA	NA	9238	NM_008806	18587	Mm.1372	NM_008806	ENSMUSG00000029491	Pde6b	Pdeb|r|rd|rd-1|rd1|rd10	phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide	protein-coding	0.000000	0.318408	
mm_60321.1	chr7	44218459	44218659	+	1	NA	NA	NA	2085	NM_008456	16622	Mm.443373	NM_008456	ENSMUSG00000066512	Klk1b5	Klk5|kallikrein|mGK-5	kallikrein 1-related peptidase b5	protein-coding	0.020000	0.522388	
mm_152869.1	chr19	24224998	24225198	-	1	NA	NA	NA	-72	NM_011597	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.040000	0.547264	
mm_94541.1	chr11	9191674	9191874	+	1	NA	NA	NA	-168	NM_178259	268379	Mm.39270	NM_178259	ENSMUSG00000004668	Abca13	9830132L24|A930002G16Rik|AI956815	ATP-binding cassette, sub-family A (ABC1), member 13	protein-coding	0.010000	0.477612	-48(TCTCTTAGAGCC,+,0.00)
mm_132101.1	chr16	31422231	31422431	+	1	NA	NA	NA	34	NM_175177	71911	Mm.293470	NM_175177	ENSMUSG00000046598	Bdh1	2310032J20Rik|AI327223|Bdh	3-hydroxybutyrate dehydrogenase, type 1	protein-coding	0.040000	0.492537	
mm_109834.1	chr12	4201420	4201620	-	1	NA	NA	NA	-32507	NM_001204912	69709	Mm.250552	NM_001204912	ENSMUSG00000096199	Ptrhd1	2410017P09Rik	peptidyl-tRNA hydrolase domain containing 1	protein-coding	0.005000	0.452736	
mm_33311.1	chr4	129066020	129066220	+	1	NA	NA	NA	7849	NM_029219	75234	Mm.259672	NM_029219	ENSMUSG00000028793	Rnf19b	4930534K13Rik|4930555L03Rik|Ibrdc3	ring finger protein 19B	protein-coding	0.000000	0.318408	
mm_127710.1	chr15	103009452	103009652	+	1	NA	NA	NA	-10	NM_010465	15425	Mm.4444	NM_010465	ENSMUSG00000001661	Hoxc6	Hox-3.3|Hox-6.1	homeobox C6	protein-coding	0.030000	0.477612	
mm_87445.1	chr10	51481613	51481813	+	1	NA	NA	NA	1101	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.005000	0.477612	
mm_38662.1	chr4	144438616	144438816	-	1	NA	NA	NA	56	NM_027056	69364	Mm.158267	NM_027056	ENSMUSG00000028589	1700012P22Rik	-	RIKEN cDNA 1700012P22 gene	protein-coding	0.005000	0.457711	
mm_8572.1	chr1	155527079	155527279	-	1	NA	NA	NA	-68	NR_132128	433367	Mm.359304	NR_132128	ENSMUSG00000073535	Gm5532	EG433367	predicted gene 5532	ncRNA	0.025000	0.422886	
mm_44598.1	chr5	25100101	25100301	-	1	NA	NA	NA	441	NM_145401	108099	Mm.33649	NM_145401	ENSMUSG00000028944	Prkag2	2410051C13Rik|AAKG|AAKG2|AI854673|H91620p|WPWS	protein kinase, AMP-activated, gamma 2 non-catalytic subunit	protein-coding	0.080000	0.626866	
mm_41061.1	chr5	86833172	86833372	+	1	NA	NA	NA	28782	NM_177680	231386	Mm.196325	NM_177680	ENSMUSG00000035851	Ythdc1	A730098D12Rik|C80342|mKIAA1966	YTH domain containing 1	protein-coding	0.000000	0.238806	
mm_92241.1	chr10	70096645	70096845	-	1	NA	NA	NA	-376	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.090000	0.736318	
mm_97435.1	chr11	78165576	78165776	+	1	NA	NA	NA	-126	NM_009423	22032	Mm.390418	NM_009423	ENSMUSG00000017386	Traf4	A530032M13Rik|CART1|msp2	TNF receptor associated factor 4	protein-coding	0.080000	0.631841	
mm_50435.1	chr6	48845943	48846143	+	1	NA	NA	NA	4387	NM_001098271	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.005000	0.487562	
mm_115954.1	chr13	23757516	23757716	-	1	NA	NA	NA	679	NM_178193	326620	Mm.261642	NM_178193	ENSMUSG00000069266	Hist1h4b	-	histone cluster 1, H4b	protein-coding	0.015000	0.442786	
mm_140063.1	chr17	74702626	74702826	+	1	NA	NA	NA	-15024	NM_152817	74196	Mm.209503	NM_152817	ENSMUSG00000024078	Ttc27	2610511O17Rik	tetratricopeptide repeat domain 27	protein-coding	0.000000	0.253731	-77(TGATCTATAAGG,-,0.00),55(CTATTTAAAGTC,+,0.00)
mm_21645.1	chr2	164333390	164333590	-	1	NA	NA	NA	725	NM_009301	20944	Mm.140154	NM_009301	ENSMUSG00000017004	Svs5	BB115186|Semg1|Svp-1|Svp1|Svp5	seminal vesicle secretory protein 5	protein-coding	0.040000	0.477612	-82(TGGTTTTAAAGG,-,0.00)
mm_85816.1	chr9	110408043	110408243	-	1	NA	NA	NA	67	NM_001081043	104831	Mm.335477	NM_001081043	ENSMUSG00000036057	Ptpn23	AI462446|PTP-TD14	protein tyrosine phosphatase, non-receptor type 23	protein-coding	0.100000	0.706468	
mm_109225.1	chr12	108793230	108793430	+	1	NA	NA	NA	19	NM_009537	22632	Mm.3868	NM_009537	ENSMUSG00000021264	Yy1	AW488674|NF-E1	YY1 transcription factor	protein-coding	0.145000	0.835821	
mm_51082.1	chr6	67017410	67017610	+	1	NA	NA	NA	-19089	NR_040278	320172	Mm.449039	NR_040278	ENSMUSG00000087231	E230016M11Rik	-	RIKEN cDNA E230016M11 gene	ncRNA	0.025000	0.487562	
mm_100352.1	chr11	118428363	118428563	+	1	NA	NA	NA	6	NM_001204129	56745	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.020000	0.582090	
mm_172352.1	chr7	114705852	114706052	-	1	NA	NA	NA	-12691	NM_054084	116903	Mm.273838	NM_054084	ENSMUSG00000030666	Calcb	CGRP2|Calc2	calcitonin-related polypeptide, beta	protein-coding	0.015000	0.427861	
mm_94134.1	chr10	128696165	128696365	-	1	NA	NA	NA	3	NM_177411	19344	Mm.12815	NM_011229	ENSMUSG00000000711	Rab5b	C030027M18Rik	RAB5B, member RAS oncogene family	protein-coding	0.070000	0.661692	
mm_19277.1	chr2	85518926	85519126	-	1	NA	NA	NA	-91	NM_001081664	228151	Mm.17636	NM_001081664	ENSMUSG00000075217	4833423E24Rik	Fads2p1|Gm113	RIKEN cDNA 4833423E24 gene	protein-coding	0.005000	0.497512	
mm_74636.1	chr8	13253938	13254138	-	1	NA	NA	NA	124	NM_172750	234072	Mm.132785	NM_172750	ENSMUSG00000031448	Adprhl1	Arh2|D330008N11Rik	ADP-ribosylhydrolase like 1	protein-coding	0.020000	0.537313	
mm_121833.1	chr14	20500994	20501194	-	1	NA	NA	NA	-4193	NM_029104	74843	Mm.295241	NM_029104	ENSMUSG00000021815	Mss51	4833444M15Rik|Zmynd17	MSS51 mitochondrial translational activator	protein-coding	0.010000	0.343284	-35(GACTTTAAATAC,-,0.00),28(GTCTTTAAAAGG,-,0.00),29(TCTTTAAAAGGA,+,0.00)
mm_103712.1	chr11	79519258	79519458	-	1	NA	NA	NA	4404	NM_001077496	216984	Mm.439665	NM_001077496	ENSMUSG00000093938	Evi2b	Evi-2|Evi2	ecotropic viral integration site 2b	protein-coding	0.015000	0.338308	3(CCATTTATAGCA,+,0.00)
mm_52817.1	chr6	121346593	121346793	+	1	NA	NA	NA	-4	NM_133661	14411	Mm.274506	NM_133661	ENSMUSG00000030109	Slc6a12	BGT1|GAT-2|GAT2|Gabt2	solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	protein-coding	0.030000	0.552239	
mm_122443.1	chr14	45285850	45286050	-	1	NA	NA	NA	32622	NM_015774	50527	Mm.387108	NM_015774	ENSMUSG00000021831	Ero1l	ERO1-L|Ero1a	ERO1-like (S. cerevisiae)	protein-coding	0.010000	0.383085	19(GTTTATATAAAG,-,0.00)
mm_17636.1	chr2	31141872	31142072	-	1	NA	NA	NA	36	NM_001177649	14269	Mm.52297	NM_019406	ENSMUSG00000075415	Fnbp1	1110057E06Rik|2210010H06Rik|FBP1|Fbp17	formin binding protein 1	protein-coding	0.150000	0.746269	
mm_142484.1	chr17	45746690	45746890	-	1	NA	NA	NA	-12946	NM_028164	72240	Mm.482897	NM_028164	ENSMUSG00000094690	1600014C23Rik	-	RIKEN cDNA 1600014C23 gene	protein-coding	0.035000	0.582090	
mm_159399.1	chr3	95870525	95870725	-	1	NA	NA	NA	-6	NM_078479	66292	Mm.24108	NM_078479	ENSMUSG00000054312	Mrps21	1810031B19Rik	mitochondrial ribosomal protein S21	protein-coding	0.015000	0.427861	
mm_151073.1	chr19	47537117	47537317	+	1	NA	NA	NA	-197	NM_175360	108689	Mm.218048	NM_175360	ENSMUSG00000042694	Obfc1	0610009H20Rik|2310057J23Rik|AAF-44|AAF44|AI413458|RPA-32	oligonucleotide/oligosaccharide-binding fold containing 1	protein-coding	0.080000	0.626866	
mm_170741.1	chr2	154892681	154892881	-	1	NA	NA	NA	125	NM_026030	67204	Mm.377134	NM_026030	ENSMUSG00000074656	Eif2s2	2810026E11Rik|38kDa|AA408636|AA571381|AA986487|AW822225|D2Ertd303e|EIF2|EIF2B	eukaryotic translation initiation factor 2, subunit 2 (beta)	protein-coding	0.090000	0.621891	
mm_93542.1	chr10	115505554	115505754	-	1	NA	NA	NA	-64332	NM_029982	77798	Mm.446685	NM_029982	ENSMUSG00000092210	A930009A15Rik	-	RIKEN cDNA A930009A15 gene	protein-coding	0.020000	0.482587	
mm_20145.1	chr2	121473945	121474145	-	1	NA	NA	NA	-22	NM_001081975	100034361	Mm.270393	NM_001081975	ENSMUSG00000048222	Mfap1b	-	microfibrillar-associated protein 1B	protein-coding	0.055000	0.532338	-72(CCCTTTAAGCGA,+,0.00)
mm_85482.1	chr9	106080110	106080310	-	1	NA	NA	NA	16481	NM_026763	68553	Mm.28854	NM_026763	ENSMUSG00000032572	Col6a4	1110001D15Rik|AI413310|AU023415|Dvwa|EG235580|Vwa6	collagen, type VI, alpha 4	protein-coding	0.050000	0.611940	
mm_27327.1	chr3	50368480	50368680	-	1	NA	NA	NA	75033	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.383085	
mm_46738.1	chr5	110809997	110810197	-	1	NA	NA	NA	-16	NM_001347394	22241	Mm.271898	NM_009469	ENSMUSG00000029512	Ulk1	AU041434|Unc51.1|mKIAA0722	unc-51 like kinase 1	protein-coding	0.110000	0.696517	
mm_31845.1	chr4	74251940	74252140	+	1	NA	NA	NA	161	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.100000	0.651741	
mm_158828.1	chrX	168122833	168123033	-	1	NA	NA	NA	64	NM_001290427	333605	Mm.426168	NM_001033330	ENSMUSG00000049176	Frmpd4	Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso	FERM and PDZ domain containing 4	protein-coding	0.045000	0.691542	
mm_34856.1	chr4	155522507	155522707	+	1	NA	NA	NA	31246	NM_001160016	14688	Mm.2344	NM_008142	ENSMUSG00000029064	Gnb1	AA409223|C77571|Gnb-1	guanine nucleotide binding protein (G protein), beta 1	protein-coding	0.025000	0.497512	
mm_49866.1	chr6	38552794	38552994	+	1	NA	NA	NA	1560	NM_001170848	192196	Mm.276133	NM_138680	ENSMUSG00000029823	Luc7l2	4930471C18Rik|AA522013|AU015269|CGI59|Cgi74	LUC7-like 2 (S. cerevisiae)	protein-coding	0.020000	0.268657	
mm_146674.1	chr18	12819591	12819791	-	1	NA	NA	NA	216	NR_045524	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.040000	0.522388	
mm_14044.1	chr2	122264720	122264920	+	1	NA	NA	NA	29981	NM_146126	20322	Mm.371580	NM_146126	ENSMUSG00000027227	Sord	Sdh-1|Sdh1|Sodh-1	sorbitol dehydrogenase	protein-coding	0.005000	0.457711	
mm_30596.1	chr4	6367864	6368064	+	1	NA	NA	NA	2284	NM_001098227	53378	Mm.247473	NM_016807	ENSMUSG00000028249	Sdcbp	MDA-9|Sycl|syntenin-1	syndecan binding protein	protein-coding	0.005000	0.417910	
mm_157803.1	chrX	73927997	73928197	-	1	NA	NA	NA	2753	NM_023132	19703	Mm.236969	NM_023132	ENSMUSG00000031387	Renbp	Age|Rnbp	renin binding protein	protein-coding	0.010000	0.572139	12(CCCTTGATAAGG,-,0.00)
mm_77206.1	chr8	113854821	113855021	-	1	NA	NA	NA	-6082	NM_172466	208936	Mm.167471	NM_172466	ENSMUSG00000053399	Adamts18	9630038L21|ADAMTS21|E130314N14Rik	a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18	protein-coding	0.010000	0.457711	
mm_10016.1	chr1	192061734	192061934	-	1	NA	NA	NA	30765	NM_011633	22033	Mm.380491	NM_011633		Traf5	-	TNF receptor-associated factor 5	protein-coding	0.015000	0.537313	
mm_137588.1	chr17	28022083	28022283	+	1	NA	NA	NA	58401	NM_013687	21463	Mm.29758	NM_013687	ENSMUSG00000062859	Tcp11	D17Ken1|Tcp-11	t-complex protein 11	protein-coding	0.030000	0.592040	
mm_157886.1	chrX	75843153	75843353	-	1	NA	NA	NA	-190	NM_001346520	102866	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	0.005000	0.417910	52(TGGTTTTAAAAG,-,0.00),54(GTTTTAAAAGTG,+,0.00)
mm_53669.1	chr6	141644814	141645014	+	1	NA	NA	NA	15396	NM_020495	28253	Mm.272223	NM_020495	ENSMUSG00000030236	Slco1b2	7330442B20Rik|OATP-C|OATP2|Oatp1b2|Oatp4|Slc21a10|Slc21a6|lst-1|mlst-1	solute carrier organic anion transporter family, member 1b2	protein-coding	0.010000	0.412935	
mm_114275.1	chr13	58215605	58215805	+	1	NA	NA	NA	-52	NM_026842	56085	Mm.182053	NM_026842	ENSMUSG00000005312	Ubqln1	1110046H03Rik|1810030E05Rik|AU019746|C77538|D13Ertd372e|Da41|Dsk2|Plic-1|Plic1|Xdrp1	ubiquilin 1	protein-coding	0.155000	0.726368	53(CCTTTTCTAGCC,+,0.00)
mm_48308.1	chr5	138619594	138619794	-	1	NA	NA	NA	49	NM_001163797	24135	Mm.27575	NM_013844	ENSMUSG00000058291	Zfp68	KRAB3|KRAZ2|Zfp70|mszf22|mszf49	zinc finger protein 68	protein-coding	0.060000	0.641791	
mm_152884.1	chr19	24556128	24556328	-	1	NA	NA	NA	-401	NM_008846	18719	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	0.125000	0.771144	
mm_154735.1	chrX	9849609	9849809	+	1	NA	NA	NA	6	NM_029229	385317	Mm.108656	NM_029229	ENSMUSG00000048994	H2al3	4930557A04Rik	H2A histone family member L3	protein-coding	0.005000	0.447761	-36(GGTTATAAAAGC,-,0.00)
mm_72282.1	chr8	75100323	75100523	+	1	NA	NA	NA	6805	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.015000	0.417910	
mm_132179.1	chr16	32400630	32400830	+	1	NA	NA	NA	224	NM_001160402	277203	Mm.484240	NM_001160402	ENSMUSG00000079625	Tm4sf19	EG277203	transmembrane 4 L six family member 19	protein-coding	0.035000	0.552239	
mm_32210.1	chr4	101550213	101550413	+	1	NA	NA	NA	-281	NM_001164583	72685	Mm.76494	NM_198412	ENSMUSG00000028528	Dnajc6	2810027M23Rik|mKIAA0473	DnaJ heat shock protein family (Hsp40) member C6	protein-coding	0.070000	0.631841	
mm_70585.1	chr8	13171106	13171306	+	1	NA	NA	NA	12045	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.000000	0.507463	
mm_97790.1	chr11	82829045	82829245	+	1	NA	NA	NA	-102	NM_026097	67338	Mm.341608	NM_026097	ENSMUSG00000020696	Rffl	1700051E09Rik|4930516L10Rik|BG080975|Carp2	ring finger and FYVE like domain containing protein	protein-coding	0.000000	0.427861	
mm_25657.1	chr3	121532561	121532761	+	1	NA	NA	NA	-317	NM_145394	213603	Mm.33062	NM_145394	ENSMUSG00000039865	Slc44a3	BC010552	solute carrier family 44, member 3	protein-coding	0.015000	0.477612	
mm_29714.1	chr3	123690727	123690927	-	1	NA	NA	NA	25	NR_121616	83398	Mm.443908	NM_031186	ENSMUSG00000027977	Ndst3	4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3	protein-coding	0.115000	0.751244	
mm_30736.1	chr4	13889981	13890181	+	1	NA	NA	NA	105299	NM_009822	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.025000	0.378109	
mm_162713.1	chr10	28747436	28747636	+	1	NA	NA	NA	79176	NM_178666	210757	Mm.123021	NM_178666	ENSMUSG00000049109	Themis	E430004N04Rik|Gasp|Spot|Tsepa|thylex	thymocyte selection associated	protein-coding	0.000000	0.383085	
mm_96874.1	chr11	70214049	70214249	+	1	NA	NA	NA	239	NM_153081	216867	Mm.289238	NM_153081	ENSMUSG00000040938	Slc16a11	AB041591|MCT 11|MNCb-2717	solute carrier family 16 (monocarboxylic acid transporters), member 11	protein-coding	0.055000	0.631841	
mm_26511.1	chr3	145891406	145891606	+	1	NA	NA	NA	-32756	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.020000	0.532338	
mm_65547.1	chr7	27131102	27131302	-	1	NA	NA	NA	11247	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.065000	0.572139	
mm_130038.1	chr15	88980333	88980533	-	1	NA	NA	NA	-1880	NM_133241	170790	Mm.32780	NM_133241	ENSMUSG00000035805	Mlc1	AW048630|BB074274|Kiaa0027-hp|LVM|MLC|VL|WKL1|mKIAA0027	megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	protein-coding	0.040000	0.562189	
mm_40986.1	chr5	77266124	77266324	+	1	NA	NA	NA	730	NM_011263	19712	Mm.28840	NM_011263	ENSMUSG00000029249	Rest	2610008J04Rik|AA407358|NRSF|REST4	RE1-silencing transcription factor	protein-coding	0.150000	0.791045	
mm_69418.1	chr7	132599525	132599725	-	1	NA	NA	NA	12	NM_009123	20231	Mm.334281	NM_009123	ENSMUSG00000048528	Nkx1-2	Nkx-1.1|Nkx-1.2|Sax1	NK1 transcription factor related, locus 2 (Drosophila)	protein-coding	0.075000	0.701493	
mm_21306.1	chr2	157079103	157079303	-	1	NA	NA	NA	62	NM_001164663	320706	Mm.79466	NM_001164663	ENSMUSG00000055485	Soga1	9830001H06Rik|AI426038|D430036N24Rik|Soga	suppressor of glucose, autophagy associated 1	protein-coding	0.160000	0.825871	
mm_92326.1	chr10	75764212	75764412	-	1	NA	NA	NA	45	NM_172549	104248	Mm.257404	NM_172549	ENSMUSG00000020196	Cabin1	A330070M20Rik|Cain|Ppp3in	calcineurin binding protein 1	protein-coding	0.090000	0.631841	
mm_157082.1	chrX	9435975	9436175	-	1	NA	NA	NA	33249	NM_007807	13058	Mm.200362	NM_007807	ENSMUSG00000015340	Cybb	C88302|CGD91-phox|Cgd|Cyd|Nox2|gp91-1|gp91phox	cytochrome b-245, beta polypeptide	protein-coding	0.000000	0.467662	
mm_108089.1	chr12	74284224	74284424	+	1	NA	NA	NA	48	NR_030735	74284	Mm.287421	NR_030733	ENSMUSG00000071265	1700086L19Rik	1700006L05Rik|AU016007	RIKEN cDNA 1700086L19 gene	ncRNA	0.130000	0.671642	-76(GCCTAGAAAAGC,-,0.00)
mm_168639.1	chr1	184848194	184848394	+	1	NA	NA	NA	-2447	NM_133684	67247	Mm.177724	NM_133684	ENSMUSG00000073481	Marc2	2810484M10Rik|Mosc2|mARC1	mitochondrial amidoxime reducing component 2	protein-coding	0.005000	0.462687	
mm_124343.1	chr14	103844297	103844497	-	1	NA	NA	NA	79	NM_001136061	13618	Mm.229532	NM_007904	ENSMUSG00000022122	Ednrb	ET-B|ET-BR|ETR-b|ETb|Sox10m1	endothelin receptor type B	protein-coding	0.050000	0.577114	
mm_99810.1	chr11	108395206	108395406	+	1	NA	NA	NA	9	NM_013475	11818	Mm.2266	NM_013475	ENSMUSG00000000049	Apoh	B2GPI|beta-2-GPI|beta2-GPI	apolipoprotein H	protein-coding	0.040000	0.497512	
mm_53874.1	chr6	149408967	149409167	+	1	NA	NA	NA	83	NM_009753	12121	Mm.177181	NM_009753	ENSMUSG00000003452	Bicd1	B830009D06Rik|bic-D 1	bicaudal D homolog 1 (Drosophila)	protein-coding	0.070000	0.666667	
mm_48921.1	chr6	4004201	4004401	+	1	NA	NA	NA	314	NM_025331	66066	Mm.25547	NM_025331	ENSMUSG00000032766	Gng11	0610037B21Rik	guanine nucleotide binding protein (G protein), gamma 11	protein-coding	0.055000	0.582090	
mm_23197.1	chr3	41354052	41354252	+	1	NA	NA	NA	139047	NR_040385	78706	Mm.366094	NR_040385	ENSMUSG00000097639	Platr4	C430002E04Rik	pluripotency associated transcript 4	ncRNA	0.020000	0.467662	
mm_90464.1	chr10	127759711	127759911	+	1	NA	NA	NA	48	NM_080436	107605	Mm.484271	NM_080436	ENSMUSG00000089789	Rdh1	-	retinol dehydrogenase 1 (all trans)	protein-coding	0.005000	0.447761	
mm_2640.1	chr1	125174790	125174990	+	1	NA	NA	NA	260837	NM_023735	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.040000	0.557214	
mm_139265.1	chr17	47769096	47769296	+	1	NA	NA	NA	-16548	NM_011549	21425	Mm.2305	NM_011549	ENSMUSG00000023990	Tfeb	Tcfeb|bHLHe35	transcription factor EB	protein-coding	0.015000	0.616915	
mm_152148.1	chr19	7215280	7215480	-	1	NA	NA	NA	2236	NM_007750	12868	Mm.14022	NM_007750	ENSMUSG00000035885	Cox8a	COX8L	cytochrome c oxidase subunit VIIIa	protein-coding	0.020000	0.547264	
mm_5279.1	chr1	20565154	20565354	-	1	NA	NA	NA	52803	NM_153179	241035	Mm.249253	NM_153179	ENSMUSG00000043760	Pkhd1	AI118496|AI182499|FPC|Tigm1	polycystic kidney and hepatic disease 1	protein-coding	0.000000	0.308458	
mm_1265.1	chr1	63178370	63178570	+	1	NA	NA	NA	-553	NR_028558	100217464	Mm.484706	NR_028558	ENSMUSG00000064602	Snora41	MBI-83	small nucleolar RNA, H/ACA box 41	snoRNA	0.010000	0.462687	-84(GCCTAGAAAGGG,-,0.00)
mm_49882.1	chr6	38611016	38611216	+	1	NA	NA	NA	26123	NM_001033171	74253	Mm.121859	NM_001033171	ENSMUSG00000071537	Klrg2	2310020F24Rik	killer cell lectin-like receptor subfamily G, member 2	protein-coding	0.005000	0.333333	
mm_16181.1	chr2	172646548	172646748	+	1	NA	NA	NA	95657	NM_001159696	21420	Mm.3629	NM_009335	ENSMUSG00000028640	Tfap2c	AA409384|AP2gamma|Ap-2.2|Stra2|Tcfap2c	transcription factor AP-2, gamma	protein-coding	0.025000	0.477612	19(CCTTTTATATGT,+,0.00)
mm_43181.1	chr5	127905611	127905811	+	1	NA	NA	NA	273449	NM_177005	319804	Mm.237888	NM_177005	ENSMUSG00000049971	Glt1d1	5730455A04Rik	glycosyltransferase 1 domain containing 1	protein-coding	0.005000	0.432836	-35(GAATTTAAAAGC,-,0.00)
mm_132655.1	chr16	41556756	41556956	+	1	NA	NA	NA	23514	NM_175548	268890	Mm.310524	NM_175548	ENSMUSG00000061080	Lsamp	5430428I19|AW046674|B130007O04Rik|D930023J12Rik|Lam|Lamp	limbic system-associated membrane protein	protein-coding	0.005000	0.398010	
mm_13706.1	chr2	117157403	117157603	+	1	NA	NA	NA	-27624	NR_030440	732489		NR_030440	ENSMUSG00000076376	Mir674	Mirn674|mir-674|mmu-mir-674	microRNA 674	ncRNA	0.000000	0.388060	65(GTTTATAGAGGA,+,0.00)
mm_77470.1	chr8	122426879	122427079	-	1	NA	NA	NA	4894	NM_145834	234836	Mm.222808	NM_145834	ENSMUSG00000046108	Il17c	IL-17C	interleukin 17C	protein-coding	0.030000	0.567164	-10(GCTTTTCGGGCC,+,0.00)
mm_114816.1	chr13	91609190	91609390	+	1	NA	NA	NA	-132231	NM_028790	74156	Mm.275963	NM_028790	ENSMUSG00000021620	Acot12	1300004O04Rik|4930449F15Rik|AV027244|Cach|mCACH-1	acyl-CoA thioesterase 12	protein-coding	0.010000	0.358209	
mm_408.1	chr1	34212869	34213069	+	1	NA	NA	NA	52639	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.005000	0.398010	
mm_38761.1	chr4	147902917	147903117	-	1	NA	NA	NA	1681	NM_001285923	170731	Mm.154312	NM_133201	ENSMUSG00000029020	Mfn2	D630023P19Rik|Fzo	mitofusin 2	protein-coding	0.020000	0.487562	
mm_69593.1	chr7	135715986	135716186	-	1	NA	NA	NA	293	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.110000	0.721393	
mm_95771.1	chr11	54908960	54909160	+	1	NA	NA	NA	6206	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.010000	0.492537	
mm_121189.1	chr14	103049600	103049800	+	1	NA	NA	NA	2688	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.015000	0.457711	
mm_82533.1	chr9	20746142	20746342	-	1	NA	NA	NA	-18028	NM_173777	244723	Mm.293552	NM_173777	ENSMUSG00000032172	Olfm2	A030009A06Rik	olfactomedin 2	protein-coding	0.145000	0.800995	
mm_62717.1	chr7	110772665	110772865	+	1	NA	NA	NA	161	NM_009667	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.010000	0.522388	
mm_141824.1	chr17	34617112	34617312	-	1	NA	NA	NA	-1241	NM_152922	81701	Mm.231343	NM_152922	ENSMUSG00000015467	Egfl8	Ng3	EGF-like domain 8	protein-coding	0.020000	0.631841	
mm_688.1	chr1	40542864	40543064	+	1	NA	NA	NA	27602	NM_010553	16174	Mm.20466	NM_010553	ENSMUSG00000026068	Il18rap	AcPL|IL-18R-beta|IL-18RAcP|IL-18Rbeta|IL-1RAcPL	interleukin 18 receptor accessory protein	protein-coding	0.015000	0.457711	
mm_22393.1	chr2	181227864	181228064	-	1	NA	NA	NA	7948	NM_199312	332713	Mm.23349	NM_199312	ENSMUSG00000047841	BC051628	1700026M20Rik|Fndc11	cDNA sequence BC051628	protein-coding	0.000000	0.497512	26(CCTTTTCTACTG,+,0.00),72(CCTCTTATATGC,+,0.00),74(TCTTATATGCTC,+,0.00)
mm_157682.1	chrX	59585579	59585779	-	1	NA	NA	NA	-107	NM_001290414	14168	Mm.7995	NM_010200	ENSMUSG00000031137	Fgf13	Fhf2	fibroblast growth factor 13	protein-coding	0.005000	0.437811	71(AGCCCTTAAAGC,-,0.00),72(GCCCTTAAAGCC,+,0.00)
mm_12069.1	chr2	59629971	59630171	+	1	NA	NA	NA	-16698	NM_001290659	66860	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.010000	0.557214	
mm_45880.1	chr5	88328290	88328490	-	1	NA	NA	NA	11078	NM_008644	17830	Mm.200411	NM_008644	ENSMUSG00000064156	Prol1	Muc10	proline rich, lacrimal 1	protein-coding	0.010000	0.472637	
mm_50055.1	chr6	41178291	41178491	+	1	NA	NA	NA	-123881	NM_011646	22074	Mm.383263	NM_011646	ENSMUSG00000054106	Try4	0910001B19Rik|Td	trypsin 4	protein-coding	0.005000	0.482587	
mm_128564.1	chr15	56429133	56429333	-	1	NA	NA	NA	-260711	NR_002874	594843	Mm.484850	NR_002874	ENSMUSG00000086541	Has2os	EG594843|Has2as|Hasnt	hyaluronan synthase 2, opposite strand	ncRNA	0.015000	0.467662	
mm_11313.1	chr2	30312539	30312739	+	1	NA	NA	NA	26206	NM_198304	227699	Mm.330119	NM_198304	ENSMUSG00000052533	Nup188	BC025526|U89435|mKIAA0169	nucleoporin 188	protein-coding	0.030000	0.527363	
mm_47896.1	chr5	134739407	134739607	-	1	NA	NA	NA	7816	NM_007925	13717	Mm.275320	NM_007925	ENSMUSG00000029675	Eln	AI385707|AI480567|E030024M20Rik	elastin	protein-coding	0.010000	0.393035	-73(CCTTTTAGGGGT,+,0.00)
mm_4233.1	chr1	171370066	171370266	+	1	NA	NA	NA	-7	NM_027893	71740	Mm.263414	NM_027893	ENSMUSG00000006411	Nectin4	1200017F15Rik|Prr4|Pvrl4	nectin cell adhesion molecule 4	protein-coding	0.010000	0.547264	-49(TTCTCTTTAAGG,-,0.00)
mm_115400.1	chr13	113870580	113870780	+	1	NA	NA	NA	76172	NM_172595	218639	Mm.79837	NM_172595	ENSMUSG00000042348	Arl15	A430036I03|Arfrp2|C230032K13Rik	ADP-ribosylation factor-like 15	protein-coding	0.050000	0.532338	
mm_133583.1	chr16	91407409	91407609	+	1	NA	NA	NA	1274	NM_008349	16155	Mm.4154	NM_008349	ENSMUSG00000022969	Il10rb	6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2	interleukin 10 receptor, beta	protein-coding	0.010000	0.308458	
mm_161485.1	chr15	84325869	84326069	+	1	NA	NA	NA	-150	NM_001162500	64099	Mm.251356	NM_022321	ENSMUSG00000022439	Parvg	AI413459	parvin, gamma	protein-coding	0.045000	0.616915	
mm_32783.1	chr4	116708592	116708792	+	1	NA	NA	NA	-238	NM_026714	68394	Mm.425201	NM_026714	ENSMUSG00000028689	Ccdc163	0610037D15Rik|4933430J04Rik	coiled-coil domain containing 163	protein-coding	0.055000	0.512438	
mm_1962.1	chr1	86470664	86470864	+	1	NA	NA	NA	44435	NM_027966	71863	Mm.179627	NM_027966	ENSMUSG00000036574	1700019O17Rik	-	RIKEN cDNA 1700019O17 gene	protein-coding	0.010000	0.542289	
mm_88939.1	chr10	81317784	81317984	+	1	NA	NA	NA	-3219	NM_027381	70312	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.030000	0.651741	
mm_26790.1	chr3	9761055	9761255	-	1	NA	NA	NA	72524	NM_053182	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.000000	0.358209	41(CACTATATAGGC,-,0.00)
mm_34044.1	chr4	138216537	138216737	+	1	NA	NA	NA	25	NM_001285478	15441	Mm.348429	NM_010470	ENSMUSG00000028759	Hp1bp3	Hp1bp74	heterochromatin protein 1, binding protein 3	protein-coding	0.195000	0.825871	
mm_74257.1	chr8	124863109	124863309	+	1	NA	NA	NA	176	NM_010322	14712	Mm.29114	NM_010322	ENSMUSG00000031985	Gnpat	AU019525|D1Ertd819e|DHAPAT	glyceronephosphate O-acyltransferase	protein-coding	0.090000	0.686567	
mm_33363.1	chr4	129491197	129491397	+	1	NA	NA	NA	107	NM_001085491	68233	Mm.424983	NM_001085491	ENSMUSG00000078554	Fam229a	1700125D06Rik	family with sequence similarity 229, member A	protein-coding	0.080000	0.716418	
mm_88408.1	chr10	77011895	77012095	+	1	NA	NA	NA	0	NR_045882	100038479	Mm.387034	NR_045882	ENSMUSG00000074919	Gm10787	ENSMUSG00000074919	predicted gene 10787	ncRNA	0.010000	0.477612	
mm_44634.1	chr5	27791572	27791772	-	1	NA	NA	NA	-122	NM_018878	55982	Mm.277190	NM_018878	ENSMUSG00000002221	Paxip1	D5Ertd149e|PTIP	PAX interacting (with transcription-activation domain) protein 1	protein-coding	0.085000	0.661692	
mm_69488.1	chr7	134172781	134172981	-	1	NA	NA	NA	52216	NM_007400	11489	Mm.439714	NM_007400	ENSMUSG00000054555	Adam12	Mltna	a disintegrin and metallopeptidase domain 12 (meltrin alpha)	protein-coding	0.005000	0.472637	
mm_43895.1	chr5	144186481	144186681	+	1	NA	NA	NA	-3705	NM_010800	17341	Mm.386767	NM_010800	ENSMUSG00000052271	Bhlha15	1810009C13Rik|Bhlhb8|MIST-1|Mist1	basic helix-loop-helix family, member a15	protein-coding	0.005000	0.328358	
mm_35599.1	chr4	43031332	43031532	-	1	NA	NA	NA	-48	NM_023231	66592	Mm.331565	NM_023231	ENSMUSG00000028455	Stoml2	0610038F01Rik|MSLP2|SLP-2	stomatin (Epb7.2)-like 2	protein-coding	0.100000	0.661692	
mm_50460.1	chr6	48907717	48907917	+	1	NA	NA	NA	2831	NM_001161621	76507	Mm.213898	NM_029638	ENSMUSG00000029811	Aoc1	1600012D06Rik|Abp1|DAO	amine oxidase, copper-containing 1	protein-coding	0.030000	0.616915	
mm_26799.1	chr3	9879408	9879608	-	1	NA	NA	NA	-45829	NM_001195031	94212	Mm.23897	NM_053182	ENSMUSG00000027508	Pag1	Cbp|F730007C19Rik|Pag	phosphoprotein associated with glycosphingolipid microdomains 1	protein-coding	0.000000	0.487562	
mm_124468.1	chr14	121303404	121303604	-	1	NA	NA	NA	75726	NM_145465	223255	Mm.390756	NM_145465	ENSMUSG00000063410	Stk24	1810013H02Rik|C76483|MST-3|Mst3|STE20	serine/threonine kinase 24	protein-coding	0.015000	0.497512	-100(TCCTTTAAATGG,-,0.00),-98(CTTTAAATGGGG,+,0.00)
mm_95757.1	chr11	54906161	54906361	+	1	NA	NA	NA	3407	NM_008161	14778	Mm.200916	NM_008161	ENSMUSG00000018339	Gpx3	AA960521|EGPx|GPx|GSHPx-3|GSHPx-P	glutathione peroxidase 3	protein-coding	0.010000	0.597015	
mm_33518.1	chr4	130929347	130929547	+	1	NA	NA	NA	-14938	NM_010769	17180	Mm.271796	NM_010769	ENSMUSG00000040533	Matn1	CMP|Crtm|Mat1|matrilin-1	matrilin 1, cartilage matrix protein	protein-coding	0.005000	0.542289	
mm_93835.1	chr10	121586747	121586947	-	1	NA	NA	NA	-53	NM_019786	56480	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.140000	0.761194	
mm_138778.1	chr17	37246853	37247053	+	1	NA	NA	NA	-14585	NM_146512	258505	Mm.353371	NM_146512	ENSMUSG00000058802	Olfr97	MOR156-2	olfactory receptor 97	protein-coding	0.015000	0.497512	77(ACCTCTAAAGGG,-,0.00)
mm_109228.1	chr12	108829610	108829810	+	1	NA	NA	NA	6166	NM_181328	214663	Mm.266264	NM_181328	ENSMUSG00000021265	Slc25a29	C030003J19Rik|CACL|mCACL	solute carrier family 25 (mitochondrial carrier, palmitoylcarnitine transporter), member 29	protein-coding	0.015000	0.517413	-95(CCCTTTATAGTG,+,0.00)
mm_152639.1	chr19	12502017	12502217	-	1	NA	NA	NA	-121	NM_172442	207521	Mm.247695	NM_172442	ENSMUSG00000039982	Dtx4	AI449438|BC044798|D930042H13|RNF155	deltex 4, E3 ubiquitin ligase	protein-coding	0.040000	0.572139	
mm_26810.1	chr3	10205246	10205446	-	1	NA	NA	NA	3230	NM_024406	11770	Mm.582	NM_024406	ENSMUSG00000062515	Fabp4	422/aP2|ALBP/Ap2|Ap2|Lbpl	fatty acid binding protein 4, adipocyte	protein-coding	0.015000	0.487562	
mm_94455.1	chr11	6403775	6403975	+	1	NA	NA	NA	2245	NR_106109	102465759		NR_106109	ENSMUSG00000098516	Mir7651	Gm27664|mmu-mir-7651	microRNA 7651	ncRNA	0.000000	0.567164	
mm_102595.1	chr11	62184966	62185166	-	1	NA	NA	NA	-63918	NM_007413	11541	Mm.40740	NM_007413	ENSMUSG00000018500	Adora2b	A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384	adenosine A2b receptor	protein-coding	0.015000	0.432836	-61(TGTCATAAAAGC,-,0.00)
mm_84022.1	chr9	57681927	57682127	-	1	NA	NA	NA	1628	NM_009993	13077	Mm.15537	NM_009993	ENSMUSG00000032310	Cyp1a2	CP12|Cyp1a1|P450-3	cytochrome P450, family 1, subfamily a, polypeptide 2	protein-coding	0.060000	0.597015	
mm_162924.1	chr10	121202651	121202851	+	1	NA	NA	NA	108438	NM_029057	74694	Mm.233833	NM_029057	ENSMUSG00000052302	Tbc1d30	4930505D03Rik	TBC1 domain family, member 30	protein-coding	0.020000	0.492537	
mm_133923.1	chr16	97994920	97995120	+	1	NA	NA	NA	-2327	NR_130962	245305	Mm.148033	NR_130962		B230307C23Rik	EG245305|OTTMUSG00000028475	RIKEN cDNA B230307C23 gene	ncRNA	0.010000	0.437811	
mm_85771.1	chr9	109040809	109041009	-	1	NA	NA	NA	2342	NM_001284332	66940	Mm.196533	NM_025858	ENSMUSG00000025647	Shisa5	2310008D10Rik|6430628I05Rik|Scotin|mShisa5	shisa family member 5	protein-coding	0.015000	0.512438	
mm_43318.1	chr5	134985925	134986125	+	1	NA	NA	NA	-189	NM_009902	12739	Mm.158662	NM_009902	ENSMUSG00000070473	Cldn3	AI182374|Cpetr2|mRVP1	claudin 3	protein-coding	0.045000	0.587065	
mm_160888.1	chr11	69964773	69964973	+	1	NA	NA	NA	94	NM_001193619	53624	Mm.281896	NM_016887	ENSMUSG00000018569	Cldn7	-	claudin 7	protein-coding	0.025000	0.557214	
mm_8030.1	chr1	135132481	135132681	-	1	NA	NA	NA	-6	NM_007955	13924	Mm.4450	NM_007955		Ptprv	Esp|OST|OST-PTP|mOST-PTP	protein tyrosine phosphatase, receptor type, V	protein-coding	0.045000	0.666667	-1(CCCTCTAAGAGC,-,0.00)
mm_29889.1	chr3	131234070	131234270	-	1	NA	NA	NA	37931	NM_008212	15107	Mm.260164	NM_008212	ENSMUSG00000027984	Hadh	AA409008|AU019341|AW742602|HCDH|Hadhsc|Schad	hydroxyacyl-Coenzyme A dehydrogenase	protein-coding	0.015000	0.567164	
mm_56329.1	chr6	92534808	92535008	-	1	NA	NA	NA	-47	NM_001134459	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.020000	0.532338	3(GTCCCTTTAAGC,-,0.00),5(CCCTTTAAGCTG,+,0.00)
mm_98951.1	chr11	98451736	98451936	+	1	NA	NA	NA	5002	NM_010346	14786	Mm.276702	NM_010346	ENSMUSG00000019312	Grb7	mKIAA4028	growth factor receptor bound protein 7	protein-coding	0.035000	0.597015	
mm_51316.1	chr6	72314416	72314616	+	1	NA	NA	NA	9906	NM_147779	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.005000	0.457711	
mm_12188.1	chr2	65334227	65334427	+	1	NA	NA	NA	29699	NM_177074	320106	Mm.227703	NM_177074	ENSMUSG00000061171	Slc38a11	9330158F14Rik	solute carrier family 38, member 11	protein-coding	0.025000	0.487562	
mm_63132.1	chr7	123003547	123003747	+	1	NA	NA	NA	33083	NM_175023	19647	Mm.4480	NM_011247	ENSMUSG00000030779	Rbbp6	4933422O15Rik|AI316869|BB233631|C030034J04Rik|C77662|P2P-R|PACT	retinoblastoma binding protein 6	protein-coding	0.005000	0.422886	
mm_70279.1	chr8	3600567	3600767	+	1	NA	NA	NA	13217	NM_001347111	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.025000	0.562189	
mm_84529.1	chr9	67048061	67048261	-	1	NA	NA	NA	1052	NM_001164255	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.105000	0.666667	
mm_91119.1	chr10	19505975	19506175	-	1	NA	NA	NA	-85874	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.020000	0.462687	
mm_56283.1	chr6	91411251	91411451	-	1	NA	NA	NA	18	NM_009527	22421	Mm.56964	NM_009527	ENSMUSG00000030093	Wnt7a	AI849442|Wnt-7a|px|tw	wingless-type MMTV integration site family, member 7A	protein-coding	0.130000	0.766169	
mm_124759.1	chr15	6644811	6645011	+	1	NA	NA	NA	-63470	NM_030168	78757	Mm.275811	NM_030168	ENSMUSG00000050310	Rictor	4921505C17Rik|6030405M08Rik|AVO3|AW492497|D530039E11Rik	RPTOR independent companion of MTOR, complex 2	protein-coding	0.010000	0.343284	
mm_86944.1	chr10	24639762	24639962	+	1	NA	NA	NA	44420	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ctgf	Ccn2|Fisp12|Hcs24|fisp-12	connective tissue growth factor	protein-coding	0.010000	0.547264	
mm_42219.1	chr5	113330560	113330760	+	1	NA	NA	NA	-6115	NR_106088	102465709		NR_106088	ENSMUSG00000105778	Mir7229	mmu-mir-7229	microRNA 7229	ncRNA	0.005000	0.497512	
mm_159142.1	chr2	86020526	86020726	+	1	NA	NA	NA	-14	NM_146578	258571	Mm.223099	NM_146578	ENSMUSG00000045392	Olfr1033	MOR199-2	olfactory receptor 1033	protein-coding	0.045000	0.552239	
mm_168718.1	chr12	10900185	10900385	-	1	NA	NA	NA	-147528	NR_045860	71457	Mm.95280	NR_045860		7420701I03Rik	-	RIKEN cDNA 7420701I03 gene	ncRNA	0.050000	0.507463	
mm_37879.1	chr4	132422331	132422531	-	1	NA	NA	NA	15	NM_001161797	100169	Mm.158361	NM_175306	ENSMUSG00000066043	Phactr4	3110001B12Rik|AI527228|AW495572|C330013F19Rik|N28169|mKIAA4120	phosphatase and actin regulator 4	protein-coding	0.065000	0.671642	
mm_7312.1	chr1	98057624	98057824	-	1	NA	NA	NA	-9931	NR_037993	78603	Mm.442597	NR_037993	ENSMUSG00000089706	B230216N24Rik	-	RIKEN cDNA B230216N24 gene	ncRNA	0.015000	0.452736	
mm_20679.1	chr2	132455197	132455397	-	1	NA	NA	NA	30556	NR_045802	70845	Mm.158461	NR_045802	ENSMUSG00000027345	4921508D12Rik	-	RIKEN cDNA 4921508D12 gene	ncRNA	0.005000	0.497512	
mm_50581.1	chr6	49056148	49056348	+	1	NA	NA	NA	-17547	NM_029353	75593	Mm.439947	NM_029353	ENSMUSG00000029815	Malsu1	2410003K15Rik|Matsu1	mitochondrial assembly of ribosomal large subunit 1	protein-coding	0.030000	0.537313	
mm_7524.1	chr1	124110596	124110796	-	1	NA	NA	NA	-65137	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.343284	
mm_3284.1	chr1	136627710	136627910	+	1	NA	NA	NA	2909	NM_001160251	226442	Mm.62521	NM_177643	ENSMUSG00000041483	Zfp281	Znf281	zinc finger protein 281	protein-coding	0.015000	0.432836	
mm_51952.1	chr6	91754875	91755075	+	1	NA	NA	NA	52418	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.040000	0.557214	
mm_17696.1	chr2	32349511	32349711	-	1	NA	NA	NA	3718	NM_001301737	13429	Mm.44736	NM_010065	ENSMUSG00000026825	Dnm1	AI838169|Dnm|Ftfl|mKIAA4093	dynamin 1	protein-coding	0.005000	0.542289	
mm_41971.1	chr5	107359738	107359938	+	1	NA	NA	NA	28644	NM_054054	114642	Mm.182836	NM_054054	ENSMUSG00000029279	Brdt	7420412D09Rik|Brd6|Fsrg3	bromodomain, testis-specific	protein-coding	0.095000	0.746269	
mm_64563.1	chr7	144857324	144857524	+	1	NA	NA	NA	-3962	NM_010202	14175	Mm.4956	NM_010202	ENSMUSG00000050917	Fgf4	Fgf-4|Fgfk|HBGF-4|Hst1|Hstf-1|KS3|hst|hst-1|kFGF	fibroblast growth factor 4	protein-coding	0.025000	0.572139	
mm_164485.1	chr16	75909229	75909429	-	1	NA	NA	NA	-63	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.015000	0.427861	
mm_37717.1	chr4	129542619	129542819	-	1	NA	NA	NA	-73	NM_008228	433759	Mm.202504	NM_008228	ENSMUSG00000028800	Hdac1	HD1|Hdac1-ps|MommeD5|RPD3	histone deacetylase 1	protein-coding	0.130000	0.756219	
mm_31523.1	chr4	54947528	54947728	+	1	NA	NA	NA	-317	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip	zinc finger protein 462	protein-coding	0.025000	0.512438	
mm_169161.1	chr13	65415029	65415229	-	1	NA	NA	NA	136275	NM_178364	170936	Mm.151546	NM_178364	ENSMUSG00000021514	Zfp369	B930030B22Rik|D230020H11Rik|NRIF2	zinc finger protein 369	protein-coding	0.015000	0.527363	
mm_9852.1	chr1	184732522	184732722	-	1	NA	NA	NA	-129	NM_008250	15284	Mm.1347	NM_008250	ENSMUSG00000039377	Hlx	Hlx1	H2.0-like homeobox	protein-coding	0.040000	0.393035	15(GTTTTTAGAGAG,+,0.00)
mm_10797.1	chr2	24349487	24349687	+	1	NA	NA	NA	4216	NM_001039701	16181	Mm.882	NM_031167	ENSMUSG00000026981	Il1rn	F630041P17Rik|IL-1ra	interleukin 1 receptor antagonist	protein-coding	0.020000	0.547264	2(CCCCTTATAGTC,+,0.00)
mm_62770.1	chr7	112336500	112336700	+	1	NA	NA	NA	-31708	NM_027587	100504195	Mm.291129	NM_027587	ENSMUSG00000030771	Micalcl	4921517J23Rik	MICAL C-terminal like	protein-coding	0.020000	0.587065	
mm_73801.1	chr8	117275056	117275256	+	1	NA	NA	NA	18137	NM_001163262	74440	Mm.233181	NM_028941	ENSMUSG00000034390	Cmip	4933407C03Rik|5830471E12Rik|AI314065|AI464126	c-Maf inducing protein	protein-coding	0.010000	0.492537	
mm_121205.1	chr14	103053258	103053458	+	1	NA	NA	NA	6346	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.040000	0.597015	
mm_31169.1	chr4	43453692	43453892	+	1	NA	NA	NA	834	NM_001110320	12517	Mm.188157	NM_007654	ENSMUSG00000028459	Cd72	CD72c|Ly-19|Ly-32|Ly-m19|Lyb-2	CD72 antigen	protein-coding	0.035000	0.592040	
mm_49390.1	chr6	24863826	24864026	+	1	NA	NA	NA	5929	NM_028957	74468	Mm.251601	NM_028957	ENSMUSG00000029678	Hyal5	4933439A12Rik	hyaluronoglucosaminidase 5	protein-coding	0.000000	0.368159	
mm_31827.1	chr4	69925584	69925784	+	1	NA	NA	NA	484751	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.060000	0.552239	
mm_84809.1	chr9	77347701	77347901	-	1	NA	NA	NA	69	NM_027150	69642	Mm.35008	NM_027150	ENSMUSG00000032355	Mlip	2310046A06Rik|AI931782|CIP	muscular LMNA-interacting protein	protein-coding	0.020000	0.447761	
mm_153150.1	chr19	34251755	34251955	-	1	NA	NA	NA	3518	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.025000	0.432836	
mm_103184.1	chr11	70514530	70514730	-	1	NA	NA	NA	-14	NM_001013607	327956	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	0.005000	0.502488	
mm_114503.1	chr13	70574386	70574586	+	1	NA	NA	NA	1245	NR_045934	73584	Mm.442491	NR_045934	ENSMUSG00000101051	1700100L14Rik	-	RIKEN cDNA 1700100L14 gene	ncRNA	0.000000	0.542289	
mm_88536.1	chr10	78425639	78425839	+	1	NA	NA	NA	69	NM_007793	13014	Mm.6095	NM_007793	ENSMUSG00000005054	Cstb	AA960480|Stfb	cystatin B	protein-coding	0.080000	0.651741	
mm_30940.1	chr4	33031632	33031832	+	1	NA	NA	NA	307	NM_019586	56228	Mm.259095	NM_019586	ENSMUSG00000028277	Ube2j1	0710008M05Rik|1110030I22Rik|NCUBE-1|Ncube|Ncube1|Ubc6p	ubiquitin-conjugating enzyme E2J 1	protein-coding	0.175000	0.810945	
mm_86192.1	chr9	119564652	119564852	-	1	NA	NA	NA	-2074	NM_001253860	20271	Mm.103584	NM_021544	ENSMUSG00000032511	Scn5a	Nav1.5|Nav1.5c|SkM1|SkM2|mH1	sodium channel, voltage-gated, type V, alpha	protein-coding	0.025000	0.462687	
mm_43552.1	chr5	137596910	137597110	+	1	NA	NA	NA	3698	NM_001254762	68929	Mm.41355	NM_030037	ENSMUSG00000037221	Mospd3	1190005J19Rik|5133401H10Rik|Gtig2|R124	motile sperm domain containing 3	protein-coding	0.025000	0.606965	
mm_87006.1	chr10	26809631	26809831	+	1	NA	NA	NA	37219	NM_176837	73910	Mm.356496	NM_176837	ENSMUSG00000039031	Arhgap18	4833419J07Rik|AI314906|AI843501	Rho GTPase activating protein 18	protein-coding	0.000000	0.422886	
mm_150780.1	chr19	44294873	44295073	+	1	NA	NA	NA	1297	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.020000	0.537313	
mm_96101.1	chr11	60476194	60476394	+	1	NA	NA	NA	6955	NM_001103171	17910	Mm.89960	NM_010862	ENSMUSG00000042678	Myo15	Myo15a|sh-2|sh2	myosin XV	protein-coding	0.015000	0.537313	
mm_103333.1	chr11	74589924	74590124	-	1	NA	NA	NA	134	NM_001015046	380711	Mm.425690	NM_001015046	ENSMUSG00000038807	Rap1gap2	AU067654|Garnl4|Gm1561|mKIAA1039	RAP1 GTPase activating protein 2	protein-coding	0.095000	0.666667	
mm_146691.1	chr18	12879866	12880066	-	1	NA	NA	NA	13	NM_001252489	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.085000	0.671642	
mm_85526.1	chr9	106465195	106465395	-	1	NA	NA	NA	645	NM_001159652	436090	Mm.482905	NM_001159652	ENSMUSG00000091735	Gpr62	4933402E03Rik	G protein-coupled receptor 62	protein-coding	0.150000	0.786070	
mm_1309.1	chr1	64994191	64994391	+	1	NA	NA	NA	-37467	NM_001039493	241075	Mm.239534	NM_175509	ENSMUSG00000051344	Plekhm3	9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l	pleckstrin homology domain containing, family M, member 3	protein-coding	0.025000	0.522388	
mm_83383.1	chr9	44573341	44573541	-	1	NA	NA	NA	-31451	NM_001110826	13209	Mm.267061	NM_007841	ENSMUSG00000032097	Ddx6	1110001P04Rik|E230023J21Rik|HLR2|mRCK/P54|p54|rck	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	protein-coding	0.015000	0.437811	
mm_161221.1	chr13	67484114	67484314	-	1	NA	NA	NA	39	NM_001076791	408067	Mm.315879	NM_001076791	ENSMUSG00000059839	Zfp874b	9630025I21Rik|Rslcan16	zinc finger protein 874b	protein-coding	0.035000	0.537313	
mm_165785.1	chr3	131368630	131368830	-	1	NA	NA	NA	-23807	NM_028943	74442	Mm.273360	NM_028943	ENSMUSG00000050931	Sgms2	4933405A16Rik|5133401H06Rik|AI854299	sphingomyelin synthase 2	protein-coding	0.005000	0.482587	-79(GTGTATTAAAGG,-,0.00)
mm_54578.1	chr6	38124353	38124553	-	1	NA	NA	NA	133	NM_080467	140494	Mm.462308	NM_080467	ENSMUSG00000038600	Atp6v0a4	Atp6n1b|a4	ATPase, H+ transporting, lysosomal V0 subunit A4	protein-coding	0.020000	0.502488	
mm_86235.1	chr9	120743097	120743297	-	1	NA	NA	NA	165866	NR_073359	76100	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.010000	0.557214	
mm_52254.1	chr6	107529649	107529849	+	1	NA	NA	NA	23	NM_008516	16979	Mm.428543	NM_008516	ENSMUSG00000034648	Lrrn1	2810047E21Rik|NLRR-1	leucine rich repeat protein 1, neuronal	protein-coding	0.115000	0.731343	
mm_91352.1	chr10	27616761	27616961	-	1	NA	NA	NA	81	NM_008481	16773	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding	0.040000	0.671642	
mm_120126.1	chr14	60177196	60177396	+	1	NA	NA	NA	51619	NR_030458	751526		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA	0.125000	0.741294	
mm_45462.1	chr5	67815772	67815972	-	1	NA	NA	NA	31559	NM_009727	11980	Mm.153230	NM_009727	ENSMUSG00000037685	Atp8a1	AI481521|AI853962|APLT|AW743152|AW822227|Atp3a2|B230107D19Rik|ClassI	ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1	protein-coding	0.025000	0.502488	
mm_172474.1	chr7	44986266	44986466	-	1	NA	NA	NA	54	NM_001252476	15469	Mm.27545	NM_019830	ENSMUSG00000109324	Prmt1	6720434D09Rik|AW214366|Hrmt1l2|Mrmt1	protein arginine N-methyltransferase 1	protein-coding	0.070000	0.636816	
mm_164253.1	chr15	98145574	98145774	-	1	NA	NA	NA	28	NM_030121	78541	Mm.200766	NM_030121	ENSMUSG00000048175	Asb8	4930539L19Rik|AI788835|C430011H06Rik	ankyrin repeat and SOCS box-containing 8	protein-coding	0.135000	0.706468	
mm_156315.1	chrX	136993163	136993363	+	1	NA	NA	NA	108	NM_001035509	66995	Mm.440155	NM_025893	ENSMUSG00000031428	Zcchc18	1500031H04Rik|Sizn2	zinc finger, CCHC domain containing 18	protein-coding	0.045000	0.616915	
mm_94828.1	chr11	23306642	23306842	+	1	NA	NA	NA	-153	NM_001190401	17847	Mm.119155	NM_001190401	ENSMUSG00000056342	Usp34	A530081C03Rik|Murr2	ubiquitin specific peptidase 34	protein-coding	0.110000	0.805970	
mm_26100.1	chr3	136935618	136935818	+	1	NA	NA	NA	265652	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.010000	0.268657	
mm_34973.1	chr4	156012484	156012684	+	1	NA	NA	NA	-1111	NM_011659	22163	Mm.13885	NM_011659	ENSMUSG00000029075	Tnfrsf4	ACT35|CD134|Ly-70|Ox40|TXGP1L|Txgp1	tumor necrosis factor receptor superfamily, member 4	protein-coding	0.005000	0.417910	
mm_91428.1	chr10	33206464	33206664	-	1	NA	NA	NA	49793	NR_040657	442820	Mm.490725	NR_040657		D830005E20Rik	-	RIKEN cDNA D830005E20 gene	ncRNA	0.000000	0.437811	
mm_61459.1	chr7	75596275	75596475	+	1	NA	NA	NA	140841	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.015000	0.452736	
mm_25064.1	chr3	99240273	99240473	+	1	NA	NA	NA	-13387	NM_009323	21384	Mm.88761	NM_009323	ENSMUSG00000027868	Tbx15	Tbx14|Tbx8|de	T-box 15	protein-coding	0.065000	0.751244	
mm_40977.1	chr5	77036959	77037159	+	1	NA	NA	NA	-18196	NR_077218	68246	Mm.319633	NR_077218	ENSMUSG00000086632	1700112J05Rik	1700110A09Rik	RIKEN cDNA 1700112J05 gene	ncRNA	0.040000	0.577114	
mm_92775.1	chr10	81168782	81168982	-	1	NA	NA	NA	-1162	NM_021501	59004	Mm.34428	NM_021501	ENSMUSG00000004934	Pias4	PIASY|Pias-gamma|Piasg	protein inhibitor of activated STAT 4	protein-coding	0.055000	0.601990	-32(GCTTAAAAACCC,+,0.00)
mm_1001.1	chr1	58714220	58714420	+	1	NA	NA	NA	1034	NM_207653	12633	Mm.336848	NM_009805	ENSMUSG00000026031	Cflar	2310024N18Rik|A430105C05Rik|CLARP|Cash|Casper|ENSMUSG00000072980|FLAME|FLAME-1|Flip|Gm9845|I-FLICE|MRIT|c-Flip	CASP8 and FADD-like apoptosis regulator	protein-coding	0.010000	0.378109	88(GCCTTTAAAAAA,-,0.00)
mm_44556.1	chr5	24601992	24602192	-	1	NA	NA	NA	-90	NM_025891	66993	Mm.436539	NM_025891	ENSMUSG00000028949	Smarcd3	1500001J14Rik|2210409C08Rik|BAF60C	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3	protein-coding	0.145000	0.766169	
mm_166921.1	chr7	30976943	30977143	+	1	NA	NA	NA	0	NM_175240	76415	Mm.259739	NM_175240	ENSMUSG00000046826	Fam187b	1700020B09Rik|Tmem162	family with sequence similarity 187, member B	protein-coding	0.015000	0.512438	
mm_12319.1	chr2	69380438	69380638	+	1	NA	NA	NA	76	NM_175512	241452	Mm.211655	NM_175512	ENSMUSG00000027068	Dhrs9	C730025I08Rik|Rdh15	dehydrogenase/reductase (SDR family) member 9	protein-coding	0.040000	0.572139	
mm_164226.1	chr15	85776999	85777199	+	1	NA	NA	NA	34598	NM_001164626	72355	Mm.33706	NM_197998	ENSMUSG00000064284	Cdpf1	2210021J22Rik	cysteine rich, DPF motif domain containing 1	protein-coding	0.010000	0.452736	
mm_31107.1	chr4	42917023	42917223	+	1	NA	NA	NA	-120	NM_001346526	230085	Mm.240965	NM_172690	ENSMUSG00000036062	Phf24	GINIP|N28178	PHD finger protein 24	protein-coding	0.205000	0.865672	
mm_111616.1	chr12	102404189	102404389	-	1	NA	NA	NA	35524	NM_011175	19141	Mm.17185	NM_011175	ENSMUSG00000021190	Lgmn	AEP|AI746452|AU022324|Prsc1	legumain	protein-coding	0.020000	0.452736	
mm_149826.1	chr19	24476687	24476887	+	1	NA	NA	NA	687	NM_026520	68034	Mm.440181	NM_026520	ENSMUSG00000074922	Fam122a	2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849	family with sequence similarity 122, member A	protein-coding	0.015000	0.467662	
mm_109293.1	chr12	109559441	109559641	+	1	NA	NA	NA	-4151	NR_030427	791079		NR_030427	ENSMUSG00000076451	Mir770	Mirn770|mir-770|mmu-mir-770	microRNA 770	ncRNA	0.015000	0.398010	
mm_170708.1	chr2	142416063	142416263	-	1	NA	NA	NA	485301	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.000000	0.427861	
mm_133172.1	chr16	72027536	72027736	+	1	NA	NA	NA	206691	NR_131116	319533	Mm.373754	NR_131115		8030451O07Rik	-	RIKEN cDNA 8030451O07 gene	ncRNA	0.030000	0.462687	
mm_97675.1	chr11	79715801	79716001	+	1	NA	NA	NA	3932	NR_029579	387188		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	0.000000	0.368159	
mm_131783.1	chr16	22896327	22896527	+	1	NA	NA	NA	-2041	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.005000	0.567164	
mm_109401.1	chr12	110279130	110279330	+	1	NA	NA	NA	0	NM_172119	107585	Mm.154427	NM_172119	ENSMUSG00000075707	Dio3	-	deiodinase, iodothyronine type III	protein-coding	0.075000	0.661692	
mm_94568.1	chr11	11686301	11686501	+	1	NA	NA	NA	476	NM_001025597	22778	Mm.103545	NM_009578	ENSMUSG00000018654	Ikzf1	5832432G11Rik|Ikaros|LyF-1|Zfpn1a1|Znfn1a1|hlk-1|mKIAA4227	IKAROS family zinc finger 1	protein-coding	0.100000	0.661692	
mm_98847.1	chr11	97659644	97659844	+	1	NA	NA	NA	-3668	NM_139311	246198	Mm.23685	NM_139311	ENSMUSG00000038437	Mllt6	AI315037|Af17	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 6	protein-coding	0.020000	0.537313	
mm_168998.1	chr13	100415394	100415594	+	1	NA	NA	NA	37370	NM_008670	17940	Mm.6898	NM_008670	ENSMUSG00000021640	Naip1	AV364616|Birc1a|D13Lsd1|Naip|Naip-rs1	NLR family, apoptosis inhibitory protein 1	protein-coding	0.060000	0.552239	
mm_35833.1	chr4	48042396	48042596	-	1	NA	NA	NA	-2809	NM_015743	18124	Mm.247261	NM_015743	ENSMUSG00000028341	Nr4a3	AI573420|CHN|CSMF|MINOR|NOR-1|Nor1|TEC	nuclear receptor subfamily 4, group A, member 3	protein-coding	0.005000	0.328358	
mm_124112.1	chr14	79480873	79481073	-	1	NA	NA	NA	-221	NM_007920	13709	Mm.20938	NM_007920	ENSMUSG00000036461	Elf1	Elf-1|Sts1|mElf-1|p70	E74-like factor 1	protein-coding	0.150000	0.746269	
mm_38998.1	chr4	151568934	151569134	-	1	NA	NA	NA	292734	NM_001081557	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.020000	0.532338	
mm_65804.1	chr7	28962188	28962388	-	1	NA	NA	NA	-8	NM_021895	60595	Mm.81144	NM_021895	ENSMUSG00000054808	Actn4	C77391	actinin alpha 4	protein-coding	0.145000	0.756219	
mm_143731.1	chr17	81388175	81388375	-	1	NA	NA	NA	-323190	NM_028138	72167	Mm.273257	NM_028138	ENSMUSG00000024246	Thumpd2	2810025A12Rik	THUMP domain containing 2	protein-coding	0.015000	0.452736	12(CCTTATAGAAAG,+,0.00)
mm_9214.1	chr1	171231109	171231309	-	1	NA	NA	NA	3140	NM_010185	14127	Mm.22673	NM_010185	ENSMUSG00000058715	Fcer1g	AI573376|CD23|FcR-gamma|FcR[g]|FcRgamma|Fce1g|FcepsilonRI|Ly-50	Fc receptor, IgE, high affinity I, gamma polypeptide	protein-coding	0.025000	0.577114	
mm_76245.1	chr8	83591692	83591892	-	1	NA	NA	NA	2699	NM_027179	106529	Mm.352239	NM_027179	ENSMUSG00000031708	Tecr	2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|SC2	trans-2,3-enoyl-CoA reductase	protein-coding	0.000000	0.318408	
mm_123053.1	chr14	55643244	55643444	-	1	NA	NA	NA	462	NM_028780	74140	Mm.132857	NM_028780	ENSMUSG00000002320	Tm9sf1	1200014D02Rik|AI893436|MP70	transmembrane 9 superfamily member 1	protein-coding	0.120000	0.721393	
mm_142925.1	chr17	53846147	53846347	-	1	NA	NA	NA	-289	NM_026935	69083	Mm.19320	NM_026935	ENSMUSG00000023122	Sult1c2	1810008N17Rik|ST1C1|ST1C2|Sult1c1	sulfotransferase family, cytosolic, 1C, member 2	protein-coding	0.015000	0.368159	
mm_172824.1	chr9	16833548	16833748	+	1	NA	NA	NA	-455417	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.030000	0.467662	
mm_2654.1	chr1	125676948	125677148	+	1	NA	NA	NA	52	NM_027677	71111	Mm.32727	NM_027677	ENSMUSG00000026343	Gpr39	4933415E13Rik	G protein-coupled receptor 39	protein-coding	0.045000	0.631841	
mm_151255.1	chr19	53943980	53944180	+	1	NA	NA	NA	-226	NM_001168505	56392	Mm.228669	NM_019658	ENSMUSG00000024976	Shoc2	AU017287|Sur8|mKIAA0862	soc-2 (suppressor of clear) homolog (C. elegans)	protein-coding	0.060000	0.681592	
mm_20580.1	chr2	131146678	131146878	-	1	NA	NA	NA	13242	NM_026091	67326	Mm.27711	NM_026091	ENSMUSG00000027327	1700037H04Rik	-	RIKEN cDNA 1700037H04 gene	protein-coding	0.020000	0.646766	
mm_86680.1	chr10	18318579	18318779	+	1	NA	NA	NA	-83698	NM_144820	215814	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	0.105000	0.721393	
mm_2113.1	chr1	87864091	87864291	+	1	NA	NA	NA	-9892	NR_136921	100503175	Mm.426422	NR_136921	ENSMUSG00000101942	Gm19582	-	predicted gene, 19582	ncRNA	0.005000	0.353234	
mm_150183.1	chr19	32645052	32645252	+	1	NA	NA	NA	25147	NM_011864	23972	Mm.203916	NM_011864	ENSMUSG00000024899	Papss2	1810018P12Rik|AI159688|AtpsU2|Atpsk2|Sk2|bm	3'-phosphoadenosine 5'-phosphosulfate synthase 2	protein-coding	0.010000	0.482587	
mm_166785.1	chr6	143992286	143992486	+	1	NA	NA	NA	-45280	NM_001347506	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.005000	0.487562	
mm_140786.1	chr17	18231456	18231656	-	1	NA	NA	NA	46010	NM_001104543	665227		NM_001104543	ENSMUSG00000090417	Vmn2r94	EG665227	vomeronasal 2, receptor 94	protein-coding	0.010000	0.378109	-31(GCATATATGGTC,+,0.00)
mm_69005.1	chr7	126701082	126701282	-	1	NA	NA	NA	3038	NM_001301374	12721	Mm.290482	NM_009898	ENSMUSG00000030707	Coro1a	Clabp|Lmb3|TACO|p57	coronin, actin binding protein 1A	protein-coding	0.020000	0.562189	
mm_124495.1	chr14	121797612	121797812	-	1	NA	NA	NA	22	NM_134074	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.165000	0.810945	
mm_91517.1	chr10	37138519	37138719	-	1	NA	NA	NA	307	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.055000	0.557214	
mm_155983.1	chrX	106127090	106127290	+	1	NA	NA	NA	-16085	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.015000	0.268657	
mm_91092.1	chr10	19062013	19062213	-	1	NA	NA	NA	-46703	NM_009397	21929	Mm.116683	NM_009397	ENSMUSG00000019850	Tnfaip3	A20|Tnfip3	tumor necrosis factor, alpha-induced protein 3	protein-coding	0.005000	0.432836	
mm_158877.1	chrY	2170295	2170495	-	1	NA	NA	NA	14	NM_009571	22768	Mm.411381	NM_009571	ENSMUSG00000000103	Zfy2	Zfy-2	zinc finger protein 2, Y-linked	protein-coding	0.005000	0.527363	
mm_52090.1	chr6	97831237	97831437	+	1	NA	NA	NA	24279	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.010000	0.422886	
mm_91589.1	chr10	40257987	40258187	-	1	NA	NA	NA	-422	NM_026113	67371	Mm.64104	NM_026113	ENSMUSG00000019837	Gtf3c6	2410016F19Rik|AU019813	general transcription factor IIIC, polypeptide 6, alpha	protein-coding	0.030000	0.497512	-70(CAGTTTTAAAGG,-,0.00)
mm_149320.1	chr19	10842254	10842454	+	1	NA	NA	NA	-190	NM_023044	65221	Mm.27387	NM_023044	ENSMUSG00000024737	Slc15a3	Ci1|cI-1	solute carrier family 15, member 3	protein-coding	0.025000	0.527363	
mm_23678.1	chr3	68584212	68584412	+	1	NA	NA	NA	11944	NM_013928	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.010000	0.487562	
mm_122944.1	chr14	54965368	54965568	-	1	NA	NA	NA	1139	NM_001164171	17888	Mm.290003	NM_010856	ENSMUSG00000040752	Myh6	A830009F23Rik|AA517445|Myhc-a|Myhca|alpha-MHC	myosin, heavy polypeptide 6, cardiac muscle, alpha	protein-coding	0.030000	0.552239	
mm_127023.1	chr15	96286790	96286990	+	1	NA	NA	NA	-632	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.155000	0.805970	
mm_142275.1	chr17	39848134	39848334	-	1	NA	NA	NA	5237	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.100000	0.611940	
mm_148516.1	chr19	4232357	4232557	+	1	NA	NA	NA	42	NR_132280	69745	Mm.32518	NM_027196	ENSMUSG00000024854	Pold4	2410012M21Rik|AI463381|AW060307|Polds|p12	polymerase (DNA-directed), delta 4	protein-coding	0.000000	0.562189	
mm_155711.1	chrX	96095968	96096168	+	1	NA	NA	NA	23	NM_010833	17698	Mm.138876	NM_010833	ENSMUSG00000031207	Msn	C78546	moesin	protein-coding	0.090000	0.661692	
mm_100986.1	chr11	7213755	7213955	-	1	NA	NA	NA	68	NM_008343	16009	Mm.29254	NM_008343	ENSMUSG00000020427	Igfbp3	AI649005|IGFBP-3|IGgfbp3	insulin-like growth factor binding protein 3	protein-coding	0.135000	0.731343	
mm_67121.1	chr7	70361604	70361804	-	1	NA	NA	NA	-1111	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.080000	0.532338	-69(CACTATATAGAG,-,0.00)
mm_158477.1	chrX	141725088	141725288	-	1	NA	NA	NA	29	NM_010572	16370	Mm.261591	NM_010572	ENSMUSG00000054667	Irs4	IRS-4	insulin receptor substrate 4	protein-coding	0.040000	0.636816	
mm_12259.1	chr2	68939434	68939634	+	1	NA	NA	NA	78093	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.010000	0.358209	
mm_61503.1	chr7	78019032	78019232	+	1	NA	NA	NA	558706	NM_008746	18213	Mm.33496	NM_008746	ENSMUSG00000059146	Ntrk3	AW125844|Ntrk3_tv3|TrkC	neurotrophic tyrosine kinase, receptor, type 3	protein-coding	0.000000	0.393035	
mm_130563.1	chr15	99370265	99370465	-	1	NA	NA	NA	117	NM_001310623	22379	Mm.29043	NM_011711	ENSMUSG00000023008	Fmnl3	2700073B04Rik|FBP11|Wbp3|mKIAA2014	formin-like 3	protein-coding	0.130000	0.781095	
mm_167453.1	chr8	123001100	123001300	-	1	NA	NA	NA	41084	NR_037865	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.010000	0.452736	
mm_114048.1	chr13	54209540	54209740	+	1	NA	NA	NA	17511	NM_008286	15466	Mm.57243	NM_008286	ENSMUSG00000034987	Hrh2	-	histamine receptor H2	protein-coding	0.015000	0.517413	
mm_22465.1	chr3	3634053	3634253	+	1	NA	NA	NA	126123	NM_013920	30942	Mm.330897	NM_013920	ENSMUSG00000017688	Hnf4g	NR2A2	hepatocyte nuclear factor 4, gamma	protein-coding	0.015000	0.457711	
mm_99847.1	chr11	109361996	109362196	+	1	NA	NA	NA	-698	NM_010303	14674	Mm.193925	NM_010303	ENSMUSG00000020611	Gna13	AU024132|AU043124|Galpha13	guanine nucleotide binding protein, alpha 13	protein-coding	0.040000	0.522388	
mm_17845.1	chr2	34372495	34372695	-	1	NA	NA	NA	-550	NM_016768	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.135000	0.756219	
mm_166297.1	chr5	104113836	104114036	-	1	NA	NA	NA	152	NM_010097	13602	Mm.29027	NM_010097	ENSMUSG00000029309	Sparcl1	Ecm2|Sc1|hevin|mast9	SPARC-like 1	protein-coding	0.030000	0.487562	
mm_170672.1	chr2	121413814	121414014	+	1	NA	NA	NA	12	NM_007952	14827	Mm.263177	NM_007952	ENSMUSG00000027248	Pdia3	58kDa|ERp57|ERp60|ERp61|Erp|Grp58|PDI|PDI-Q2|PI-PLC|PLC[a]|Plca	protein disulfide isomerase associated 3	protein-coding	0.125000	0.721393	
mm_59188.1	chr7	24475151	24475351	+	1	NA	NA	NA	-6772	NM_153112	260299	Mm.178322	NM_153112	ENSMUSG00000054793	Cadm4	Igdf4c|Igsf4c|Tsll2	cell adhesion molecule 4	protein-coding	0.055000	0.582090	
mm_149222.1	chr19	10018149	10018349	+	1	NA	NA	NA	21	NM_144538	74760	Mm.281969	NM_144538	ENSMUSG00000024663	Rab3il1	1200014K04Rik|AI115013|C76746|Rab3ail1	RAB3A interacting protein (rabin3)-like 1	protein-coding	0.110000	0.756219	
mm_42456.1	chr5	115435349	115435549	+	1	NA	NA	NA	5764	NM_008629	17690	Mm.5077	NM_008629	ENSMUSG00000054256	Msi1	Msi1h|Musahi1|m-Msi-1	musashi RNA-binding protein 1	protein-coding	0.035000	0.601990	
mm_86050.1	chr9	114563148	114563348	-	1	NA	NA	NA	1121	NM_001042503	636931	Mm.17857	NM_001042503	ENSMUSG00000079259	Trim71	2610206G21Rik|AL022943|Gm1127|Lin41|lin-41|mLin41|mlin-41	tripartite motif-containing 71	protein-coding	0.110000	0.656716	
mm_43410.1	chr5	135888940	135889140	+	1	NA	NA	NA	1121	NM_013560	15507	Mm.13849	NM_013560	ENSMUSG00000004951	Hspb1	27kDa|Hsp25	heat shock protein 1	protein-coding	0.040000	0.592040	
mm_23327.1	chr3	53703334	53703534	+	1	NA	NA	NA	-46079	NM_172862	242022	Mm.38378	NM_172862	ENSMUSG00000037016	Frem2	6030440P17Rik|8430406N05Rik|Gm409|b2b1562Clo|my|ne|nv1	Fras1 related extracellular matrix protein 2	protein-coding	0.035000	0.532338	
mm_63714.1	chr7	130692794	130692994	+	1	NA	NA	NA	338	NM_021314	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.060000	0.701493	
mm_74119.1	chr8	123102343	123102543	+	1	NA	NA	NA	93	NM_016738	270106	Mm.319719	NM_016738	ENSMUSG00000000740	Rpl13	A52|L13	ribosomal protein L13	protein-coding	0.095000	0.636816	
mm_47031.1	chr5	115732134	115732334	-	1	NA	NA	NA	-675	NM_001080808	75665	Mm.233914	NM_001080808	ENSMUSG00000041609	Ccdc64	2210403N09Rik|BICDR-1|Bicdl1	coiled-coil domain containing 64	protein-coding	0.155000	0.810945	
mm_85018.1	chr9	88380086	88380286	-	1	NA	NA	NA	52577	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	0.025000	0.492537	
mm_1174.1	chr1	60977849	60978049	+	1	NA	NA	NA	35	NM_017480	54167	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0.015000	0.467662	
mm_165384.1	chr2	130292205	130292405	+	1	NA	NA	NA	-3634	NM_001110513	228598	Mm.32582	NM_152993	ENSMUSG00000053552	Ebf4	Ebf3|O/E-4|Olf-1	early B cell factor 4	protein-coding	0.010000	0.447761	
mm_85180.1	chr9	96630786	96630986	-	1	NA	NA	NA	617	NM_053268	114713	Mm.124502	NM_053268	ENSMUSG00000032413	Rasa2	5430433H21Rik|AA517451|AU023900|GAP1m	RAS p21 protein activator 2	protein-coding	0.130000	0.835821	
mm_51284.1	chr6	72304209	72304409	+	1	NA	NA	NA	-301	NM_001282071	20388	Mm.46033	NM_147779	ENSMUSG00000056370	Sftpb	AI562151|SF-B|SP-B|Sftp-3|Sftp3	surfactant associated protein B	protein-coding	0.030000	0.562189	
mm_21539.1	chr2	163730267	163730467	-	1	NA	NA	NA	19872	NM_007398	11486	Mm.388	NM_007398	ENSMUSG00000017697	Ada	-	adenosine deaminase	protein-coding	0.015000	0.527363	
mm_131182.1	chr16	7189370	7189570	+	1	NA	NA	NA	119635	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.000000	0.338308	
mm_100948.1	chr11	6560912	6561112	-	1	NA	NA	NA	829	NM_001190344	216527	Mm.221271	NM_146014	ENSMUSG00000000378	Ccm2	BC029157	cerebral cavernous malformation 2	protein-coding	0.005000	0.417910	-81(CCCTCTAAAAAA,-,0.00),7(GCTTAAAGAGCA,+,0.00)
mm_138413.1	chr17	35068772	35068972	+	1	NA	NA	NA	1547	NM_023463	68468	Mm.215096	NM_023463	ENSMUSG00000092586	Ly6g6c	1110003M04Rik|AU016360|G6c|NG24	lymphocyte antigen 6 complex, locus G6C	protein-coding	0.035000	0.557214	
mm_124513.1	chr14	121929338	121929538	-	1	NA	NA	NA	-13664	NM_182806	110168	Mm.37405	NM_182806	ENSMUSG00000050350	Gpr18	-	G protein-coupled receptor 18	protein-coding	0.030000	0.462687	
mm_7474.1	chr1	120494713	120494913	-	1	NA	NA	NA	10271	NM_010766	17167	Mm.1856	NM_010766	ENSMUSG00000026390	Marco	AI323439|Ly112|Scara2	macrophage receptor with collagenous structure	protein-coding	0.005000	0.537313	
mm_101579.1	chr11	34393818	34394018	-	1	NA	NA	NA	79096	NM_001025382	574403	Mm.444796	NM_001025382	ENSMUSG00000069911	Fam196b	EG574403|Gm6041	family with sequence similarity 196, member B	protein-coding	0.010000	0.427861	
mm_101525.1	chr11	33147328	33147528	-	1	NA	NA	NA	-28	NR_102395	14172	Mm.339812	NM_008005	ENSMUSG00000057967	Fgf18	D130055P09Rik|FGF-18	fibroblast growth factor 18	protein-coding	0.185000	0.825871	
mm_103289.1	chr11	72361768	72361968	-	1	NA	NA	NA	14	NM_011569	21689	Mm.42257	NM_011569	ENSMUSG00000020799	Tekt1	MT14	tektin 1	protein-coding	0.050000	0.532338	
mm_100511.1	chr11	120530413	120530613	+	1	NA	NA	NA	-214	NM_008101	14527	Mm.22329	NM_008101	ENSMUSG00000025127	Gcgr	GR	glucagon receptor	protein-coding	0.060000	0.646766	
mm_39880.1	chr5	31077408	31077608	+	1	NA	NA	NA	16019	NM_011773	22784	Mm.1396	NM_011773	ENSMUSG00000029151	Slc30a3	Znt3	solute carrier family 30 (zinc transporter), member 3	protein-coding	0.050000	0.626866	
mm_105345.1	chr11	102997492	102997692	-	1	NA	NA	NA	2329	NR_105896	102466988		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.010000	0.582090	
mm_115661.1	chr13	12461376	12461576	-	1	NA	NA	NA	262	NM_001291060	56048	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.120000	0.696517	
mm_23735.1	chr3	69044982	69045182	+	1	NA	NA	NA	-340	NM_025863	66949	Mm.176695	NM_025863	ENSMUSG00000034317	Trim59	2310035M22Rik|2700022F13Rik|Mrf1|TSBF1	tripartite motif-containing 59	protein-coding	0.080000	0.631841	
mm_125733.1	chr15	73182567	73182767	+	1	NA	NA	NA	2280	NM_153178	239528	Mm.23095	NM_153178	ENSMUSG00000036698	Ago2	1110029L17Rik|2310051F07Rik|AI225898|AL022874|AW546247|ENSMUSG00000072493|Eif2c2|Gerp95|Gm10365|mKIAA4215	argonaute RISC catalytic subunit 2	protein-coding	0.005000	0.522388	
mm_125552.1	chr15	58802689	58802889	+	1	NA	NA	NA	20638	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.000000	0.303483	
mm_8878.1	chr1	162860020	162860220	-	1	NA	NA	NA	-120	NM_001330318	14261	Mm.976	NM_010231	ENSMUSG00000040181	Fmo1	-	flavin containing monooxygenase 1	protein-coding	0.015000	0.507463	
mm_102734.1	chr11	67250537	67250737	-	1	NA	NA	NA	12825	NM_010855	17884	Mm.297382	NM_010855	ENSMUSG00000057003	Myh4	AI506973|MHC2B|MM|MYH-2B|Minimsc|Minmus|MyHC-IIb|Myhsf	myosin, heavy polypeptide 4, skeletal muscle	protein-coding	0.025000	0.502488	
mm_50030.1	chr6	41130028	41130228	+	1	NA	NA	NA	-94619	NM_023333	67373	Mm.153729	NM_023333	ENSMUSG00000029882	2210010C04Rik	AV072249	RIKEN cDNA 2210010C04 gene	protein-coding	0.010000	0.462687	-77(TTTTTTATAGAC,+,0.00)
mm_133367.1	chr16	84705781	84705981	+	1	NA	NA	NA	-7142	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.025000	0.462687	
mm_19717.1	chr2	104410485	104410685	-	1	NA	NA	NA	-251	NM_001033347	241589	Mm.358909	NM_001033347	ENSMUSG00000068373	D430041D05Rik	9630056G07Rik|G2	RIKEN cDNA D430041D05 gene	protein-coding	0.125000	0.681592	
mm_122049.1	chr14	30094782	30094982	-	1	NA	NA	NA	72249	NM_175343	218865	Mm.259916	NM_172264	ENSMUSG00000015970	Chdh	AU041472|D630034H06Rik	choline dehydrogenase	protein-coding	0.015000	0.363184	
mm_33703.1	chr4	133632151	133632351	+	1	NA	NA	NA	1178	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.015000	0.507463	
mm_19132.1	chr2	80257695	80257895	-	1	NA	NA	NA	-34675	NM_177256	320769	Mm.60992	NM_177256	ENSMUSG00000050114	Prdx6b	1-cysPrx-P1|4930414C22Rik|Aop2-rs1|Prdx5-rs1|Prdx6-ps1|Prdx6-rs1|Prdx6-rs1-ps	peroxiredoxin 6B	protein-coding	0.000000	0.338308	
mm_39780.1	chr5	30156627	30156827	+	1	NA	NA	NA	1474	NM_001289798	231086	Mm.291463	NM_145558	ENSMUSG00000059447	Hadhb	4930479F15Rik|Mtpb|TP-beta	hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit	protein-coding	0.010000	0.298507	
mm_2519.1	chr1	106334460	106334660	+	1	NA	NA	NA	162691	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.005000	0.288557	
mm_63392.1	chr7	127278468	127278668	+	1	NA	NA	NA	-4509	NM_009266	20768	Mm.20294	NM_009266	ENSMUSG00000049091	Sephs2	Sps2|Ysg3	selenophosphate synthetase 2	protein-coding	0.025000	0.547264	
mm_111436.1	chr12	92792789	92792989	-	1	NA	NA	NA	651934	NR_126436	75295	Mm.243878	NR_126436		4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0.010000	0.343284	
mm_7827.1	chr1	132067919	132068119	-	1	NA	NA	NA	43	NM_172510	213006	Mm.208445	NM_172510	ENSMUSG00000059149	Mfsd4a	A230072B04|A930031D07Rik|AI850289|Mfsd4	major facilitator superfamily domain containing 4A	protein-coding	0.150000	0.781095	
mm_90080.1	chr10	116508951	116509151	+	1	NA	NA	NA	-35528	NM_021452	58802	Mm.440652	NM_021452	ENSMUSG00000054934	Kcnmb4	1700058G18Rik|2900045G12Rik	potassium large conductance calcium-activated channel, subfamily M, beta member 4	protein-coding	0.010000	0.482587	
mm_153258.1	chr19	36918958	36919158	-	1	NA	NA	NA	541	NM_028263	72514	Mm.41674	NM_028263	ENSMUSG00000047632	Fgfbp3	2610306H15Rik|Fgf-bp3	fibroblast growth factor binding protein 3	protein-coding	0.085000	0.716418	
mm_126004.1	chr15	76538744	76538944	+	1	NA	NA	NA	-98	NM_013909	30840	Mm.275279	NM_013909	ENSMUSG00000022559	Fbxl6	AU021795|Fbl6	F-box and leucine-rich repeat protein 6	protein-coding	0.065000	0.656716	
mm_90415.1	chr10	127452632	127452832	+	1	NA	NA	NA	31865	NM_001168293	71750	Mm.29342	NM_027900	ENSMUSG00000025404	R3hdm2	1300003K24Rik|AU041262|mKIAA1002	R3H domain containing 2	protein-coding	0.010000	0.447761	
mm_101044.1	chr11	8624508	8624708	-	1	NA	NA	NA	39927	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.120000	0.691542	
mm_77085.1	chr8	110755489	110755689	-	1	NA	NA	NA	29863	NM_001310591	244654	Mm.490385	NM_198625	ENSMUSG00000033763	Mtss1l	ABBA	metastasis suppressor 1-like	protein-coding	0.015000	0.547264	
mm_52737.1	chr6	120439796	120439996	+	1	NA	NA	NA	-23301	NM_008359	16172	Mm.4481	NM_008359	ENSMUSG00000002897	Il17ra	AW538159|Cdw217|Il17r|VDw217	interleukin 17 receptor A	protein-coding	0.000000	0.407960	
mm_118677.1	chr14	22079707	22079907	+	1	NA	NA	NA	60095	NM_028275	76633	Mm.489898	NM_028275	ENSMUSG00000063458	1700112E06Rik	2700009F18Rik	RIKEN cDNA 1700112E06 gene	protein-coding	0.005000	0.447761	
mm_148233.1	chr18	80469545	80469745	-	1	NA	NA	NA	22	NM_026295	67655	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.140000	0.711443	
mm_34493.1	chr4	148591887	148592087	+	1	NA	NA	NA	474	NM_009272	20810	Mm.10	NM_009272	ENSMUSG00000006442	Srm	AA407669|SpdST|SpdSy	spermidine synthase	protein-coding	0.070000	0.671642	
mm_87451.1	chr10	51483294	51483494	+	1	NA	NA	NA	2782	NM_001291892	14727	Mm.439661	NM_008147	ENSMUSG00000062593	Lilr4b	Gp49a|gp49	leukocyte immunoglobulin-like receptor, subfamily B, member 4B	protein-coding	0.010000	0.482587	
mm_49651.1	chr6	30806463	30806663	+	1	NA	NA	NA	65264	NR_029900	723930		NR_029900	ENSMUSG00000065501	Mir335	Mirn335|mir-335|mmu-mir-335	microRNA 335	ncRNA	0.000000	0.288557	
mm_71167.1	chr8	40546440	40546640	+	1	NA	NA	NA	-30693	NM_001271542	18983	Mm.272551	NM_011135	ENSMUSG00000031601	Cnot7	AU022737|CAF-1|Caf1|Pop2	CCR4-NOT transcription complex, subunit 7	protein-coding	0.000000	0.263682	
mm_78967.1	chr9	45299321	45299521	+	1	NA	NA	NA	-19679	NM_001013373	214531	Mm.394987	NM_001013373	ENSMUSG00000037129	Tmprss13	BC010843|Tpmrss13	transmembrane protease, serine 13	protein-coding	0.020000	0.547264	
mm_170680.1	chr2	123880083	123880283	+	1	NA	NA	NA	-209786	NM_001290997	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.030000	0.482587	
mm_78848.1	chr9	44334595	44334795	+	1	NA	NA	NA	-20	NM_010436	15270	Mm.245931	NM_010436	ENSMUSG00000049932	H2afx	AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax	H2A histone family, member X	protein-coding	0.085000	0.601990	-36(GAGTTTATAAGG,-,0.00),-34(GTTTATAAGGCC,+,0.00)
mm_72066.1	chr8	71474724	71474924	+	1	NA	NA	NA	5630	NR_122114	66498	Mm.260360	NM_025600	ENSMUSG00000074247	Dda1	1500034J01Rik|1700095J19Rik|R74921	DET1 and DDB1 associated 1	protein-coding	0.050000	0.577114	-24(TGCTTTTTAAAG,-,0.00),-23(GCTTTTTAAAGC,-,0.00),-22(CTTTTTAAAGCA,+,0.00)
mm_166447.1	chr5	137268078	137268278	-	1	NA	NA	NA	-20076	NM_009599	11423	Mm.255464	NM_009599	ENSMUSG00000023328	Ache	-	acetylcholinesterase	protein-coding	0.010000	0.567164	
mm_125828.1	chr15	74957372	74957572	+	1	NA	NA	NA	2366	NM_001164040	17069	Mm.788	NM_008529	ENSMUSG00000022587	Ly6e	Ly67|RIG-E|Sca-2|TSA-1|Tsa1	lymphocyte antigen 6 complex, locus E	protein-coding	0.020000	0.482587	
mm_22483.1	chr3	5400511	5400711	+	1	NA	NA	NA	175637	NM_001163301	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.020000	0.427861	
mm_85369.1	chr9	103220938	103221138	-	1	NA	NA	NA	9248	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.030000	0.532338	
mm_134498.1	chr16	18811914	18812114	-	1	NA	NA	NA	-42	NM_009862	12544	Mm.1248	NM_009862	ENSMUSG00000000028	Cdc45	Cdc45l	cell division cycle 45	protein-coding	0.050000	0.417910	
mm_91421.1	chr10	32755526	32755726	-	1	NA	NA	NA	134289	NM_001013411	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding	0.000000	0.278607	
mm_22625.1	chr3	14766316	14766516	+	1	NA	NA	NA	12044	NM_001083957	12346	Mm.273195	NM_009799	ENSMUSG00000027556	Car1	AW555628|Ca1|Car-1	carbonic anhydrase 1	protein-coding	0.010000	0.353234	
mm_64782.1	chr7	5061979	5062179	-	1	NA	NA	NA	-64	NM_133671	22185	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.120000	0.691542	
mm_60713.1	chr7	45277410	45277610	+	1	NA	NA	NA	-5363	NM_001033176	76713	Mm.425445	NM_001033176	ENSMUSG00000070568	Slc6a21	1700039E15Rik|Gm19188	solute carrier family 6 member 21	protein-coding	0.150000	0.726368	
mm_122370.1	chr14	39472020	39472220	-	1	NA	NA	NA	-309	NR_131973	432842	Mm.352566	NR_131973		LOC432842	-	uncharacterized LOC432842	ncRNA	0.055000	0.646766	
mm_22253.1	chr2	174853207	174853407	-	1	NA	NA	NA	92688	NM_007903	13616	Mm.9478	NM_007903	ENSMUSG00000027524	Edn3	ET-3|PPET3|ls|tmgc48	endothelin 3	protein-coding	0.030000	0.507463	
mm_115867.1	chr13	21468391	21468591	-	1	NA	NA	NA	10	NM_025719	66707	Mm.116869	NM_025719	ENSMUSG00000059395	Nkapl	4921504I05Rik	NFKB activating protein-like	protein-coding	0.090000	0.626866	
mm_31837.1	chr4	73790803	73791003	+	1	NA	NA	NA	-301	NM_001017427	242505	Mm.389582	NM_001017427	ENSMUSG00000043003	Rasef	BC030882|RAB45	RAS and EF hand domain containing	protein-coding	0.145000	0.711443	
mm_27191.1	chr3	34757810	34758010	-	1	NA	NA	NA	-14165	NR_110488	102638436	Mm.261793	NR_110488	ENSMUSG00000106519	Gm38509	Peril	predicted gene, 38509	ncRNA	0.045000	0.567164	
mm_168142.1	chr10	32499327	32499527	+	1	NA	NA	NA	390488	NM_001013411	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding	0.055000	0.646766	
mm_158902.1	chr1	34439584	34439784	-	1	NA	NA	NA	-12	NM_027159	69668	Mm.379170	NM_027159	ENSMUSG00000042111	Ccdc115	2310061I09Rik|Ccp1	coiled-coil domain containing 115	protein-coding	0.060000	0.532338	
mm_106063.1	chr11	116132430	116132630	-	1	NA	NA	NA	-1402	NM_178802	338364	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0.015000	0.582090	
mm_11105.1	chr2	28192854	28193054	+	1	NA	NA	NA	-139	NM_001038613	56177	Mm.43278	NM_019498	ENSMUSG00000026833	Olfm1	AMY|AW742568|Noe1|OlfA|Pancortin|Pancortin3	olfactomedin 1	protein-coding	0.080000	0.666667	
mm_171699.1	chr4	71371130	71371330	-	1	NA	NA	NA	829663	NM_011599	21885	Mm.278444	NM_011599	ENSMUSG00000008305	Tle1	C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l	transducin-like enhancer of split 1	protein-coding	0.030000	0.447761	
mm_172293.1	chr6	9656029	9656229	-	1	NA	NA	NA	706110	NM_008751	18231	Mm.46954	NM_008751	ENSMUSG00000046178	Nxph1	C130005L03Rik	neurexophilin 1	protein-coding	0.000000	0.497512	-33(CCCTTTATAAGC,+,0.00),-33(CCCTTTATAAGC,-,0.00),-31(CTTTATAAGCAC,+,0.00)
mm_22312.1	chr2	180439404	180439604	-	1	NA	NA	NA	-21474	NM_148933	108115	Mm.133687	NM_148933	ENSMUSG00000038963	Slco4a1	OATP-E|Slc21a12	solute carrier organic anion transporter family, member 4a1	protein-coding	0.015000	0.502488	
mm_167969.1	chrX	152537424	152537624	+	1	NA	NA	NA	-25810	NM_001199311	635396	Mm.485766	NM_001199311	ENSMUSG00000091863	Cldn34a	Gm7157	claudin 34A	protein-coding	0.010000	0.462687	
mm_150059.1	chr19	29383706	29383906	+	1	NA	NA	NA	16368	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.010000	0.487562	
mm_167194.1	chr7	142652952	142653152	+	1	NA	NA	NA	1944	NR_030251	723874		NR_030251	ENSMUSG00000070140	Mir483	Mirn483|mir-483|mmu-mir-483	microRNA 483	ncRNA	0.000000	0.442786	-24(TGCTTTTTAGGG,-,0.00),-22(CTTTTTAGGGTA,+,0.00)
mm_5774.1	chr1	51477621	51477821	-	1	NA	NA	NA	678	NM_028696	109019	Mm.196290	NM_028696	ENSMUSG00000026107	Nabp1	4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nbp1|Obfc2a|Ssb2	nucleic acid binding protein 1	protein-coding	0.060000	0.577114	
mm_162870.1	chr10	95180235	95180435	+	1	NA	NA	NA	-34510	NR_131146	628062		NR_131146		Gm29684	-	predicted gene, 29684	ncRNA	0.010000	0.512438	
mm_71222.1	chr8	40899127	40899327	+	1	NA	NA	NA	-27006	NM_026840	68797	Mm.284246	NM_026840	ENSMUSG00000031595	Pdgfrl	1110039P19Rik|AV013190	platelet-derived growth factor receptor-like	protein-coding	0.060000	0.547264	
mm_166138.1	chr4	156238643	156238843	+	1	NA	NA	NA	2733	NM_021303	57741	Mm.423051	NM_021303	ENSMUSG00000095567	Noc2l	AA410003|AF155546|NIR	NOC2 like nucleolar associated transcriptional repressor	protein-coding	0.000000	0.368159	
mm_62704.1	chr7	110241507	110241707	+	1	NA	NA	NA	19904	NM_009302	20947	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.000000	0.378109	-6(TTTTTTAAGGAG,+,0.00)
mm_57929.1	chr6	134566731	134566931	-	1	NA	NA	NA	82	NM_008514	16974	Mm.321990	NM_008514	ENSMUSG00000030201	Lrp6	C030016K15Rik|Cd|Gw|ska26|ska<m26Jus>|skax26	low density lipoprotein receptor-related protein 6	protein-coding	0.180000	0.796020	
mm_114370.1	chr13	62964845	62965045	+	1	NA	NA	NA	52	NM_001289924	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.075000	0.616915	
mm_142279.1	chr17	40208472	40208672	-	1	NA	NA	NA	37	NM_031190	18663	Mm.717	NM_031190	ENSMUSG00000031233	Pgk2	Pgk-2|Tcp-2	phosphoglycerate kinase 2	protein-coding	0.010000	0.442786	
mm_58359.1	chr6	148212263	148212463	-	1	NA	NA	NA	11	NM_026168	67456	Mm.59812	NM_026168	ENSMUSG00000030304	Ergic2	1200009B18Rik|4930572C01Rik|AA408438|Ptx1	ERGIC and golgi 2	protein-coding	0.070000	0.547264	
mm_149080.1	chr19	8892925	8893125	+	1	NA	NA	NA	38	NM_176843	109077	Mm.290474	NM_176843	ENSMUSG00000071652	Ints5	1110055N21Rik|mKIAA1698	integrator complex subunit 5	protein-coding	0.100000	0.681592	
mm_114074.1	chr13	54382673	54382873	+	1	NA	NA	NA	11424	NM_009946	12890	Mm.268902	NM_009946	ENSMUSG00000025867	Cplx2	921-L|AI413745|AW492120	complexin 2	protein-coding	0.000000	0.467662	
mm_88545.1	chr10	78576885	78577085	+	1	NA	NA	NA	2485	NM_173751	216136	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0.010000	0.572139	
mm_51211.1	chr6	71341382	71341582	+	1	NA	NA	NA	18670	NM_009858	12526	Mm.333148	NM_009858	ENSMUSG00000053044	Cd8b1	Cd8b|Ly-3|Ly-C|Lyt-3	CD8 antigen, beta chain 1	protein-coding	0.030000	0.532338	
mm_84119.1	chr9	58555036	58555236	-	1	NA	NA	NA	-14196	NM_133983	102657	Mm.5356	NM_133983	ENSMUSG00000035914	Cd276	6030411F23Rik|AU016588|B7RP-2|B7h3	CD276 antigen	protein-coding	0.125000	0.771144	
mm_29506.1	chr3	116252649	116252849	-	1	NA	NA	NA	735	NM_022427	64378	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.045000	0.577114	
mm_125532.1	chr15	57976064	57976264	+	1	NA	NA	NA	-9739	NM_173862	239463	Mm.221241	NM_173862	ENSMUSG00000051225	Fam83a	-	family with sequence similarity 83, member A	protein-coding	0.045000	0.537313	
mm_18683.1	chr2	71367472	71367672	-	1	NA	NA	NA	-18	NM_172436	78830	Mm.30928	NM_172436	ENSMUSG00000027010	Slc25a12	2610002D09Rik|AI839531|B230107K20Rik|BB129864	solute carrier family 25 (mitochondrial carrier, Aralar), member 12	protein-coding	0.130000	0.666667	
mm_3738.1	chr1	155158593	155158793	+	1	NA	NA	NA	-10	NM_021433	58244	Mm.66264	NM_021433	ENSMUSG00000026470	Stx6	2310039E05Rik|2410005I16Rik|AA437559|AI415714|AI845861	syntaxin 6	protein-coding	0.115000	0.716418	
mm_64983.1	chr7	16915705	16915905	-	1	NA	NA	NA	8227	NM_007590	12315	Mm.288630	NM_007590	ENSMUSG00000019370	Calm3	CaMA|R75142	calmodulin 3	protein-coding	0.070000	0.631841	
mm_66185.1	chr7	34189409	34189609	-	1	NA	NA	NA	7138	NM_026549	68079	Mm.38173	NM_026549	ENSMUSG00000002635	Pdcd2l	6030457N17Rik	programmed cell death 2-like	protein-coding	0.030000	0.507463	
mm_143566.1	chr17	74294726	74294926	-	1	NA	NA	NA	37	NM_133771	76890	Mm.311874	NM_133771	ENSMUSG00000058704	Memo1	0610016J10Rik|D930048L02Rik	mediator of cell motility 1	protein-coding	0.095000	0.716418	
mm_145301.1	chr18	53341554	53341754	+	1	NA	NA	NA	76353	NM_008908	19038	Mm.4587	NM_008908	ENSMUSG00000024538	Ppic	CyP-20c	peptidylprolyl isomerase C	protein-coding	0.035000	0.467662	
mm_27965.1	chr3	80688251	80688451	-	1	NA	NA	NA	114440	NM_013540	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.020000	0.402985	
mm_85002.1	chr9	86880341	86880541	-	1	NA	NA	NA	8	NM_001277986	20616	Mm.281651	NM_013669	ENSMUSG00000033419	Snap91	91kDa|AP180|F1-20|mKIAA0656	synaptosomal-associated protein 91	protein-coding	0.140000	0.761194	
mm_72256.1	chr8	75096792	75096992	+	1	NA	NA	NA	3274	NM_010442	15368	Mm.276389	NM_010442	ENSMUSG00000005413	Hmox1	D8Wsu38e|HO-1|HO1|Hemox|Hmox|Hsp32	heme oxygenase 1	protein-coding	0.015000	0.532338	
mm_22886.1	chr3	30602535	30602735	+	1	NA	NA	NA	548	NM_001289621	80732	Mm.200378	NM_030557	ENSMUSG00000037730	Mynn	2810011C24Rik|AA415053|AI661031|AW049392|Mynr|SBBIZ1	myoneurin	protein-coding	0.080000	0.606965	
mm_30373.1	chr3	152193738	152193938	-	1	NA	NA	NA	7	NM_025926	67035	Mm.46746	NM_025926	ENSMUSG00000028035	Dnajb4	1700029A20Rik|2010306G19Rik|5730460G06Rik	DnaJ heat shock protein family (Hsp40) member B4	protein-coding	0.060000	0.537313	
mm_83737.1	chr9	51077016	51077216	-	1	NA	NA	NA	-22	NM_001033534	244864	Mm.335152	NM_001033534	ENSMUSG00000060594	Layn	E030012M19Rik|Gm511	layilin	protein-coding	0.050000	0.641791	
mm_9413.1	chr1	172293572	172293772	-	1	NA	NA	NA	4392	NM_178405	98660	Mm.207432	NM_178405	ENSMUSG00000007097	Atp1a2	AW060654|Atpa-3|mKIAA0778	ATPase, Na+/K+ transporting, alpha 2 polypeptide	protein-coding	0.020000	0.532338	
mm_118739.1	chr14	22310785	22310985	+	1	NA	NA	NA	231913	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.005000	0.482587	
mm_67106.1	chr7	70353892	70354092	-	1	NA	NA	NA	6601	NM_009697	11819	Mm.158143	NM_009697	ENSMUSG00000030551	Nr2f2	2700033K02Rik|9430015G03Rik|ARP-1|Aporp1|COUP-TF2|COUP-TFII|COUPTFB|EAR3|SVP40|Tcfcoup2	nuclear receptor subfamily 2, group F, member 2	protein-coding	0.000000	0.368159	-78(AACTTTAAAAGG,-,0.00),-77(ACTTTAAAAGGC,+,0.00)
mm_13870.1	chr2	119843838	119844038	+	1	NA	NA	NA	44424	NM_019392	22174	Mm.2901	NM_019392	ENSMUSG00000027298	Tyro3	AI323366|Brt|Dtk|Etk-2|Rse|Sky|TK19-2|Tif|etk2/tyro3|tk19-1	TYRO3 protein tyrosine kinase 3	protein-coding	0.010000	0.452736	-87(CAATTTAAAAGG,-,0.00),-16(CCATATAAAAAC,-,0.00)
mm_168629.1	chr1	181842303	181842503	-	1	NA	NA	NA	-2	NM_133815	98386	Mm.4538	NM_133815	ENSMUSG00000004880	Lbr	AI505894|ic	lamin B receptor	protein-coding	0.125000	0.721393	
mm_49815.1	chr6	36715619	36715819	+	1	NA	NA	NA	95642	NM_008973	19242	Mm.279690	NM_008973	ENSMUSG00000029838	Ptn	HARP|HB-GAM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1	pleiotrophin	protein-coding	0.015000	0.378109	-84(AGGTATAAATGG,-,0.00)
mm_83654.1	chr9	49509724	49509924	-	1	NA	NA	NA	-8464	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	ENSMUSG00000060603|ENSMUSG00000079564	predicted gene 11149	ncRNA	0.025000	0.577114	
mm_85941.1	chr9	112099232	112099432	-	1	NA	NA	NA	19379	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.000000	0.437811	
mm_88043.1	chr10	67538204	67538404	+	1	NA	NA	NA	374	NM_001347458	13654	Mm.290421	NM_010118	ENSMUSG00000037868	Egr2	Egr-2|Krox-20|Krox20|NGF1-B|Zfp-25|Zfp-6	early growth response 2	protein-coding	0.060000	0.582090	
mm_118234.1	chr13	111489978	111490178	-	1	NA	NA	NA	-37	NM_001122963	73274	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.075000	0.691542	
mm_162437.1	chr1	105990724	105990924	+	1	NA	NA	NA	418	NM_001122675	227449	Mm.210188	NM_001122675	ENSMUSG00000038866	Zcchc2	9930114B20Rik|AW212015	zinc finger, CCHC domain containing 2	protein-coding	0.180000	0.781095	
mm_103377.1	chr11	75348239	75348439	-	1	NA	NA	NA	44	NM_001164223	68275	Mm.102574	NM_026653	ENSMUSG00000000751	Rpa1	5031405K23Rik|70kDa|AA589576|AW557552|RF-A|RP-A|Rpa	replication protein A1	protein-coding	0.125000	0.696517	
mm_34099.1	chr4	138967056	138967256	+	1	NA	NA	NA	44	NM_025786	66825	Mm.252312	NM_025786	ENSMUSG00000070661	Rnf186	9130020G10Rik	ring finger protein 186	protein-coding	0.035000	0.522388	
mm_165385.1	chr2	130397496	130397696	-	1	NA	NA	NA	33	NM_019696	56264	Mm.112701	NM_019696	ENSMUSG00000027408	Cpxm1	AA986902|Cpx-1|Cpx1|Cpxm	carboxypeptidase X 1 (M14 family)	protein-coding	0.090000	0.711443	
mm_60333.1	chr7	44319701	44319901	+	1	NA	NA	NA	9537	NM_001034115	243961	Mm.360368	NM_001034115	ENSMUSG00000038738	Shank1	-	SH3/ankyrin domain gene 1	protein-coding	0.005000	0.487562	
mm_48122.1	chr5	137143917	137144117	-	1	NA	NA	NA	-27810	NM_201373	384309	Mm.100647	NM_201373	ENSMUSG00000043279	Trim56	A130009K11Rik|Gm452|RNF109	tripartite motif-containing 56	protein-coding	0.035000	0.527363	
mm_94724.1	chr11	20647069	20647269	+	1	NA	NA	NA	15192	NM_001038625	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.020000	0.522388	
mm_146953.1	chr18	32559866	32560066	-	1	NA	NA	NA	68	NM_001347610	71683	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	0.040000	0.572139	-89(GTGTTTAAAAAA,-,0.00)
mm_51007.1	chr6	64734415	64734615	+	1	NA	NA	NA	5369	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal bHLH transcription factor 1	protein-coding	0.070000	0.606965	
mm_135404.1	chr16	44746136	44746336	-	1	NA	NA	NA	127	NM_001159329	66067	Mm.34520	NM_025332	ENSMUSG00000022668	Gtpbp8	0610037H22Rik	GTP-binding protein 8 (putative)	protein-coding	0.065000	0.616915	
mm_14956.1	chr2	152080769	152080969	+	1	NA	NA	NA	-660	NM_001160410	545474	Mm.214317	NM_001160410	ENSMUSG00000060257	Scrt2	AW060659	scratch family zinc finger 2	protein-coding	0.055000	0.606965	
mm_153153.1	chr19	34252412	34252612	-	1	NA	NA	NA	2861	NM_007392	11475	Mm.213025	NM_007392	ENSMUSG00000035783	Acta2	0610041G09Rik|Actvs|SMalphaA|a-SMA|alphaSMA	actin, alpha 2, smooth muscle, aorta	protein-coding	0.045000	0.572139	
mm_71578.1	chr8	54565777	54565977	+	1	NA	NA	NA	15546	NM_029569	76294	Mm.33171	NM_029569	ENSMUSG00000031519	Asb5	1110018D09Rik	ankyrin repeat and SOCs box-containing 5	protein-coding	0.005000	0.432836	
mm_4192.1	chr1	171224989	171225189	+	1	NA	NA	NA	35	NM_013474	11807	Mm.389209	NM_013474	ENSMUSG00000005681	Apoa2	Alp-2|Apo-AII|ApoA-II|ApoAII|Apoa-2|Hdl-1	apolipoprotein A-II	protein-coding	0.025000	0.552239	
mm_8456.1	chr1	153185934	153186134	-	1	NA	NA	NA	413	NM_008485	16782	Mm.329272	NM_008485	ENSMUSG00000026479	Lamc2	AA589349	laminin, gamma 2	protein-coding	0.095000	0.661692	
mm_56779.1	chr6	116633312	116633512	-	1	NA	NA	NA	-4413	NM_026057	67255	Mm.18810	NM_026057	ENSMUSG00000059878	Zfp422	2900028O21Rik|AU041373|KOX15|Krox-25-2|Krox-26|Krox25|Krox26|Znf22	zinc finger protein 422	protein-coding	0.015000	0.512438	
mm_26677.1	chr3	155093423	155093623	+	1	NA	NA	NA	89	NM_028938	74435	Mm.195711	NM_028938	ENSMUSG00000028182	Lrriq3	4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44	leucine-rich repeats and IQ motif containing 3	protein-coding	0.100000	0.661692	-51(GACTTGAAAAGC,-,0.00)
mm_67508.1	chr7	80782230	80782430	-	1	NA	NA	NA	21001	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.035000	0.562189	
mm_168152.1	chr10	39223103	39223303	-	1	NA	NA	NA	-59409	NM_001127376	327743	Mm.208111	NM_001127376	ENSMUSG00000062074	Wisp3	CCN6|ENSMUSG00000062074|Gm735|WISP-3	WNT1 inducible signaling pathway protein 3	protein-coding	0.005000	0.447761	
mm_50345.1	chr6	48589359	48589559	+	1	NA	NA	NA	14	NM_183309	330305	Mm.123868	NM_183309	ENSMUSG00000052730	Gm5111	A630038D02|EG330305	predicted gene 5111	protein-coding	0.020000	0.532338	
mm_143402.1	chr17	70754969	70755169	-	1	NA	NA	NA	91708	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.050000	0.502488	
mm_167308.1	chr8	61130437	61130637	+	1	NA	NA	NA	-93634	NM_021506	59009	Mm.27949	NM_021506	ENSMUSG00000031642	Sh3rf1	2200003J05Rik|Posh|R75531|Sh3md2	SH3 domain containing ring finger 1	protein-coding	0.000000	0.328358	
mm_128725.1	chr15	64060281	64060481	-	1	NA	NA	NA	67	NM_144846	223601	Mm.246108	NM_144846	ENSMUSG00000022378	Fam49b	0910001A06Rik|AW122079	family with sequence similarity 49, member B	protein-coding	0.145000	0.716418	-9(CCTTTTATAGCG,+,0.00)
mm_139742.1	chr17	62940952	62941152	+	1	NA	NA	NA	-59735	NM_010109	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.010000	0.552239	-35(CACTATAAAAGG,-,0.00)
mm_125712.1	chr15	68928302	68928502	+	1	NA	NA	NA	-18	NM_010158	13992	Mm.17964	NM_010158	ENSMUSG00000022332	Khdrbs3	Etle|SLM-2|Salp|Slm2|T-STAR	KH domain containing, RNA binding, signal transduction associated 3	protein-coding	0.170000	0.796020	
mm_82028.1	chr9	121898362	121898562	+	1	NA	NA	NA	107	NM_021609	59289	Mm.258105	NM_021609	ENSMUSG00000044534	Ackr2	AI464239|CCR10|CCR9|Ccbp2|Cmkbr9|D6	atypical chemokine receptor 2	protein-coding	0.035000	0.611940	
mm_108174.1	chr12	76405458	76405658	+	1	NA	NA	NA	1188	NM_008301	15512	Mm.296181	NM_008301	ENSMUSG00000059970	Hspa2	70kDa|HSP70.2|HSP70A2|Hsp70-2	heat shock protein 2	protein-coding	0.070000	0.592040	
mm_55291.1	chr6	54566372	54566572	-	1	NA	NA	NA	-90	NM_027268	69938	Mm.41557	NM_027268	ENSMUSG00000019124	Scrn1	2810019K23Rik|6330535A03Rik|AI852905|SES1|mKIAA0193	secernin 1	protein-coding	0.050000	0.671642	
mm_2632.1	chr1	121462141	121462341	+	1	NA	NA	NA	31174	NM_001025156	70829	Mm.25788	NM_027567	ENSMUSG00000026339	Ccdc93	4633402D15Rik|9230102M16Rik	coiled-coil domain containing 93	protein-coding	0.020000	0.542289	
mm_107305.1	chr12	31073802	31074002	+	1	NA	NA	NA	-66	NM_027828	104943	Mm.248938	NM_027828	ENSMUSG00000036136	Fam110c	9030611O19Rik|AU019489	family with sequence similarity 110, member C	protein-coding	0.070000	0.651741	
mm_92315.1	chr10	75517157	75517357	-	1	NA	NA	NA	124	NM_175133	68778	Mm.29382	NM_175133	ENSMUSG00000033416	Gucd1	1110038D17Rik	guanylyl cyclase domain containing 1	protein-coding	0.120000	0.741294	
mm_138170.1	chr17	34264688	34264888	+	1	NA	NA	NA	1561	NM_207105	14961	Mm.254067	NM_207105	ENSMUSG00000073421	H2-Ab1	AI845868|Abeta|H-2Ab|H2-Ab|I-Abeta|IAb|Ia-2|Ia2|Rmcs1	histocompatibility 2, class II antigen A, beta 1	protein-coding	0.120000	0.656716	
mm_16316.1	chr2	174304241	174304441	+	1	NA	NA	NA	6482	NM_001310085	14683	Mm.125770	NM_010309	ENSMUSG00000027523	Gnas	5530400H20Rik|A930027G11Rik|C130027O20Rik|GPSA|GSP|Galphas|Gnas1|Gnasxl|Gs-alpha|Gsa|Nesp|Nesp55|Nespl|Oed-Sml|Oedsml|P1|P2|P3|PHP1A|PHP1B|POH|SCG6	GNAS (guanine nucleotide binding protein, alpha stimulating) complex locus	protein-coding	0.000000	0.412935	
mm_117235.1	chr13	64274937	64275137	-	1	NA	NA	NA	-49	NM_172587	218294	Mm.25335	NM_172587	ENSMUSG00000033102	Cdc14b	2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1	CDC14 cell division cycle 14B	protein-coding	0.075000	0.606965	
mm_89773.1	chr10	100487503	100487703	+	1	NA	NA	NA	-256	NM_001110013	237500	Mm.296805	NM_001033332	ENSMUSG00000036676	Tmtc3	9130014E20Rik|B130008E12Rik|mSmile	transmembrane and tetratricopeptide repeat containing 3	protein-coding	0.100000	0.686567	
mm_8788.1	chr1	161647030	161647230	-	1	NA	NA	NA	141365	NM_001205243	14103	Mm.3355	NM_010177	ENSMUSG00000000817	Fasl	APT1LG1|CD178|CD95-L|CD95L|Fas-L|Faslg|Tnfsf6|Tnlg1a|gld	Fas ligand (TNF superfamily, member 6)	protein-coding	0.005000	0.393035	-65(CTTTATAAAAGA,-,0.00)
mm_173094.1	chrX	151414441	151414641	-	1	NA	NA	NA	70318	NM_198105	207375	Mm.391339	NM_198105	ENSMUSG00000025262	Fam120c	D930001I21Rik|ORF34	family with sequence similarity 120, member C	protein-coding	0.045000	0.522388	
mm_101715.1	chr11	42179608	42179808	-	1	NA	NA	NA	3222	NM_010250	14394	Mm.439668	NM_010250	ENSMUSG00000010803	Gabra1	Gabra-1	gamma-aminobutyric acid (GABA) A receptor, subunit alpha 1	protein-coding	0.015000	0.462687	
mm_91976.1	chr10	61476583	61476783	-	1	NA	NA	NA	850	NM_153542	216011	Mm.136116	NM_153542	ENSMUSG00000037151	Lrrc20	BC036304	leucine rich repeat containing 20	protein-coding	0.060000	0.601990	
mm_15306.1	chr2	155386941	155387141	+	1	NA	NA	NA	5185	NM_178111	68728	Mm.293605	NM_178111	ENSMUSG00000038375	Trp53inp2	1110029F20Rik|Tp53inp2	transformation related protein 53 inducible nuclear protein 2	protein-coding	0.010000	0.507463	
mm_30219.1	chr3	145024488	145024688	-	1	NA	NA	NA	8188	NM_017474	23844	Mm.33483	NM_017474	ENSMUSG00000028255	Clca1	Clca2|Clca3|gob-5|gob5	chloride channel accessory 1	protein-coding	0.025000	0.442786	
mm_119582.1	chr14	50924888	50925088	+	1	NA	NA	NA	39	NM_009687	11792	Mm.203	NM_009687	ENSMUSG00000035960	Apex1	APE|Apex|HAP1|Ref-1	apurinic/apyrimidinic endonuclease 1	protein-coding	0.090000	0.621891	
mm_22036.1	chr2	168206657	168206857	-	1	NA	NA	NA	355	NM_009628	11538	Mm.201322	NM_009628	ENSMUSG00000051149	Adnp	AA589558|mKIAA0784	activity-dependent neuroprotective protein	protein-coding	0.205000	0.850746	
mm_143797.1	chr17	82956257	82956457	-	1	NA	NA	NA	121868	NR_045094	100503434	Mm.187281	NR_045094		Gm19689	-	predicted gene, 19689	ncRNA	0.065000	0.577114	
mm_83027.1	chr9	37255261	37255461	-	1	NA	NA	NA	377	NM_020258	56857	Mm.440037	NM_020258	ENSMUSG00000032122	Slc37a2	G3PP|Slc37a1|cI-2|ci2	solute carrier family 37 (glycerol-3-phosphate transporter), member 2	protein-coding	0.095000	0.686567	
mm_25198.1	chr3	103774092	103774292	+	1	NA	NA	NA	17083	NM_001301306	15257	Mm.20827	NM_010432	ENSMUSG00000008730	Hipk1	1110062K04Rik|Myak	homeodomain interacting protein kinase 1	protein-coding	0.050000	0.517413	-51(CCGTTTTAAAGC,-,0.00)
mm_118421.1	chr14	7847813	7848013	+	1	NA	NA	NA	29956	NM_134080	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.010000	0.472637	
mm_139317.1	chr17	48409942	48410142	+	1	NA	NA	NA	42	NM_207219	106821	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	0.090000	0.616915	
mm_129247.1	chr15	76660027	76660227	-	1	NA	NA	NA	81	NM_001276322	54151	Mm.247752	NM_019396	ENSMUSG00000053929	Cyhr1	1110031M01Rik|AU042374|Chrp	cysteine and histidine rich 1	protein-coding	0.070000	0.636816	
mm_26355.1	chr3	142548899	142549099	+	1	NA	NA	NA	-11053	NM_018734	55932	Mm.439718	NM_018734	ENSMUSG00000028268	Gbp3	AW228655|GBP-3|GBP-4|Gbp4	guanylate binding protein 3	protein-coding	0.000000	0.318408	6(GCTTTTAGAGCA,+,0.00)
mm_14211.1	chr2	127270666	127270866	+	1	NA	NA	NA	537	NM_139308	99138	Mm.41271	NM_139308	ENSMUSG00000027367	Stard7	AI852671|AL022671|AW544915	START domain containing 7	protein-coding	0.140000	0.686567	
mm_55186.1	chr6	52183742	52183942	-	1	NA	NA	NA	7861	NM_008265	15401	Mm.439647	NM_008265	ENSMUSG00000000942	Hoxa4	AV206827|Hox-1.4	homeobox A4	protein-coding	0.025000	0.562189	
mm_50739.1	chr6	52721273	52721473	+	1	NA	NA	NA	7644	NM_025816	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.010000	0.393035	
mm_105843.1	chr11	113684073	113684273	-	1	NA	NA	NA	-22	NM_138598	28081	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0.115000	0.661692	
mm_59308.1	chr7	25279534	25279734	+	1	NA	NA	NA	-2545	NM_027882	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.090000	0.706468	
mm_123129.1	chr14	56238640	56238840	-	1	NA	NA	NA	-4083	NM_010371	14940	Mm.14465	NM_010371	ENSMUSG00000079186	Gzmc	AI323531|B10|CCP2|Ctla-5|Ctla5	granzyme C	protein-coding	0.005000	0.442786	-32(TTGTATAAAAAG,-,0.00)
mm_69284.1	chr7	128203213	128203413	-	1	NA	NA	NA	15	NR_045183	70973	Mm.441564	NR_045183	ENSMUSG00000108354	4931431B13Rik	1700108I23Rik|AA536668	RIKEN cDNA 4931431B13 gene	ncRNA	0.020000	0.557214	1(CCTTATAGAGAG,+,0.00)
mm_165313.1	chr2	103008287	103008487	+	1	NA	NA	NA	65126	NM_175094	27402	Mm.315011	NM_175094	ENSMUSG00000010914	Pdhx	AI481367|E3bp|Pdx1	pyruvate dehydrogenase complex, component X	protein-coding	0.005000	0.447761	
mm_99000.1	chr11	98798510	98798710	+	1	NA	NA	NA	2841	NM_028722	74026	Mm.258352	NM_028722	ENSMUSG00000052915	Msl1	2810017F12Rik|4121402D02Rik|4930463F05Rik|AA682082|Msl-1	male-specific lethal 1 homolog (Drosophila)	protein-coding	0.015000	0.477612	14(CACCTTAAAAGA,-,0.00)
mm_109041.1	chr12	104236038	104236238	+	1	NA	NA	NA	-11758	NR_033450	546546	Mm.390522	NM_001034870		Serpina3h	6C28|Spi2	serine (or cysteine) peptidase inhibitor, clade A, member 3H	pseudo	0.015000	0.407960	
mm_95885.1	chr11	58103966	58104166	+	1	NA	NA	NA	-87	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.110000	0.691542	
mm_51265.1	chr6	72097701	72097901	+	1	NA	NA	NA	193	NM_011375	20454	Mm.38248	NM_011375	ENSMUSG00000056091	St3gal5	3S-T|Siat9|[a]2	ST3 beta-galactoside alpha-2,3-sialyltransferase 5	protein-coding	0.120000	0.736318	
mm_172501.1	chr7	67295452	67295652	-	1	NA	NA	NA	72936	NM_001191051	75099	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.010000	0.353234	
mm_115200.1	chr13	109116113	109116313	+	1	NA	NA	NA	-208531	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.025000	0.572139	
mm_3161.1	chr1	135231994	135232194	+	1	NA	NA	NA	26378	NM_001163131	13710	Mm.441439	NM_007921	ENSMUSG00000003051	Elf3	ESE-1|ESX|jen	E74-like factor 3	protein-coding	0.090000	0.587065	
mm_80288.1	chr9	73064340	73064540	+	1	NA	NA	NA	292	NM_001301232	11891	Mm.34867	NM_023635	ENSMUSG00000032202	Rab27a	2210402C08Rik|2410003M20Rik|4933437C11Rik|ash	RAB27A, member RAS oncogene family	protein-coding	0.005000	0.393035	
mm_132929.1	chr16	49853066	49853266	+	1	NA	NA	NA	-2488	NM_010581	16423	Mm.31752	NM_010581	ENSMUSG00000055447	Cd47	9130415E20Rik|AA407862|AI848868|AW108519|B430305P08Rik|IAP|Itgp	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	protein-coding	0.015000	0.422886	
mm_108777.1	chr12	89813138	89813338	+	1	NA	NA	NA	755	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.015000	0.343284	-6(TTTTTTAAACCG,+,0.00)
mm_22601.1	chr3	14481287	14481487	+	1	NA	NA	NA	688	NM_080852	140918	Mm.215250	NM_080852	ENSMUSG00000039710	Slc7a12	Asc-2|XAT1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 12	protein-coding	0.010000	0.417910	
mm_66700.1	chr7	45920577	45920777	-	1	NA	NA	NA	172	NM_001146346	13732	Mm.20829	NM_010129	ENSMUSG00000040212	Emp3	H-4|H4|HNMP-1|MI-35|Ymp	epithelial membrane protein 3	protein-coding	0.025000	0.557214	
mm_61468.1	chr7	75611733	75611933	+	1	NA	NA	NA	156299	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.020000	0.407960	
mm_13732.1	chr2	117990135	117990335	+	1	NA	NA	NA	120967	NR_126479	329496	Mm.235844	NR_126479	ENSMUSG00000087203	Gm13986	C230060E24|OTTMUSG00000015236	predicted gene 13986	ncRNA	0.020000	0.477612	
mm_114158.1	chr13	55408937	55409137	+	1	NA	NA	NA	6195	NM_029303	75477	Mm.432537	NM_029303	ENSMUSG00000044444	Pfn3	1700012P12Rik	profilin 3	protein-coding	0.035000	0.567164	
mm_25873.1	chr3	130180745	130180945	+	1	NA	NA	NA	0	NM_029838	77018	Mm.91728	NM_029838	ENSMUSG00000058897	Col25a1	2700062B08Rik|CLAC-P	collagen, type XXV, alpha 1	protein-coding	0.095000	0.611940	12(GGGTATTTAAGG,-,0.00)
mm_141767.1	chr17	34282890	34283090	-	1	NA	NA	NA	4781	NM_010378	14960	Mm.235338	NM_010378	ENSMUSG00000036594	H2-Aa	Aalpha|H-2Aa|H2Aa|I-Aalpha|IAalpha|Ia-1|Ia1	histocompatibility 2, class II antigen A, alpha	protein-coding	0.005000	0.497512	
mm_59448.1	chr7	27133381	27133581	+	1	NA	NA	NA	13526	NM_007817	13107	Mm.4515	NM_007817	ENSMUSG00000052974	Cyp2f2	Cyp2f	cytochrome P450, family 2, subfamily f, polypeptide 2	protein-coding	0.030000	0.502488	
mm_25337.1	chr3	106684882	106685082	+	1	NA	NA	NA	-5	NM_001039478	321000	Mm.259638	NM_028081	ENSMUSG00000056260	Lrif1	2010012G17Rik|4933421E11Rik|AI450568	ligand dependent nuclear receptor interacting factor 1	protein-coding	0.055000	0.522388	
mm_164014.1	chr14	70707882	70708082	-	1	NA	NA	NA	-54898	NM_181345	328440	Mm.347749	NM_181345	ENSMUSG00000047911	Npm2	-	nucleophosmin/nucleoplasmin 2	protein-coding	0.005000	0.427861	
mm_81648.1	chr9	110953598	110953798	+	1	NA	NA	NA	2153	NM_028838	74249	Mm.307615	NM_028838	ENSMUSG00000032495	Lrrc2	2400002D05Rik|4933431K03Rik	leucine rich repeat containing 2	protein-coding	0.030000	0.507463	
mm_61710.1	chr7	81226344	81226544	+	1	NA	NA	NA	12640	NM_008803	18584	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.015000	0.447761	
mm_62611.1	chr7	107187020	107187220	+	1	NA	NA	NA	20130	NM_001002894	76858	Mm.35644	NM_001002894	ENSMUSG00000016626	Nlrp14	4921520L01Rik|GC-LRR|Nalp-iota|Nalp14|Nalp14l	NLR family, pyrin domain containing 14	protein-coding	0.000000	0.447761	
mm_170117.1	chr17	39846567	39846767	+	1	NA	NA	NA	3670	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.115000	0.636816	
mm_98211.1	chr11	87797512	87797712	+	1	NA	NA	NA	3828	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.030000	0.577114	
mm_151693.1	chr19	4377262	4377462	-	1	NA	NA	NA	19715	NM_001001984	225876	Mm.31941	NM_001001984	ENSMUSG00000054611	Kdm2a	100043628|5530401A10Rik|AA589516|AW536790|Cxxc8|Fbl11|Fbl7|Fbxl11|Gm4560|Jhdm1|Jhdm1a|lalina	lysine (K)-specific demethylase 2A	protein-coding	0.000000	0.378109	-52(TCTTTTAGGGTG,+,0.00)
mm_86523.1	chr10	7780171	7780371	+	1	NA	NA	NA	646	NM_145418	215751	Mm.471825	NM_145418	ENSMUSG00000040006	Ginm1	AA589616	glycoprotein integral membrane 1	protein-coding	0.045000	0.572139	
mm_116875.1	chr13	55021195	55021395	-	1	NA	NA	NA	90	NM_001206392	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.010000	0.487562	
mm_146867.1	chr18	24603717	24603917	-	1	NA	NA	NA	0	NM_139143	106957	Mm.21688	NM_139143	ENSMUSG00000024270	Slc39a6	Ermelin	solute carrier family 39 (metal ion transporter), member 6	protein-coding	0.120000	0.701493	
mm_110738.1	chr12	69791161	69791361	-	1	NA	NA	NA	-554	NM_183294	71091	Mm.132325	NM_183294	ENSMUSG00000020990	Cdkl1	4933411O17Rik	cyclin-dependent kinase-like 1 (CDC2-related kinase)	protein-coding	0.045000	0.552239	
mm_142966.1	chr17	56121855	56122055	-	1	NA	NA	NA	-9	NM_029796	76905	Mm.348025	NM_029796	ENSMUSG00000037095	Lrg1	1300008B03Rik|2310031E04Rik|Lrg|Lrhg	leucine-rich alpha-2-glycoprotein 1	protein-coding	0.005000	0.552239	15(GACTATATAAAG,-,0.00),17(CTATATAAAGCC,+,0.00)
mm_70105.1	chr7	142661750	142661950	-	1	NA	NA	NA	-579	NM_001122736	16002	Mm.3862	NM_010514	ENSMUSG00000048583	Igf2	AL033362|Igf-2|Igf-II|M6pr|Mpr|Peg2	insulin-like growth factor 2	protein-coding	0.005000	0.407960	
mm_51594.1	chr6	83953775	83953975	+	1	NA	NA	NA	39522	NM_008717	18139	Mm.132392	NM_008717	ENSMUSG00000030016	Zfp638	AI323587|Np220|Zfml|Znf638|mNP220	zinc finger protein 638	protein-coding	0.000000	0.353234	
mm_163062.1	chr11	65096305	65096505	+	1	NA	NA	NA	66556	NM_001099288	216831	Mm.134338	NM_175003	ENSMUSG00000033389	Arhgap44	6330543G20|AI840762|AU040829|AW493732|Rich2	Rho GTPase activating protein 44	protein-coding	0.015000	0.527363	
mm_83579.1	chr9	48340560	48340760	-	1	NA	NA	NA	238	NM_030069	78252	Mm.31626	NM_030069	ENSMUSG00000032028	Nxpe2	4432416J03Rik|AI323362|Fam55b	neurexophilin and PC-esterase domain family, member 2	protein-coding	0.020000	0.457711	-32(CTTTATATAGAA,+,0.00)
mm_74265.1	chr8	124898363	124898563	+	1	NA	NA	NA	577	NM_001111141	244666	Mm.482915	NM_001111141	ENSMUSG00000031986	Sprtn	Gm505	SprT-like N-terminal domain	protein-coding	0.100000	0.636816	
mm_5066.1	chr1	195017324	195017524	+	1	NA	NA	NA	25	NR_015566	320977	Mm.99905	NR_015566	ENSMUSG00000096929	A330023F24Rik	C030002C11Rik	RIKEN cDNA A330023F24 gene	ncRNA	0.025000	0.562189	
mm_172279.1	chr6	88059935	88060135	-	1	NA	NA	NA	-14765	NM_009005	19349	Mm.333233	NM_009005	ENSMUSG00000079477	Rab7	Rab7a	RAB7, member RAS oncogene family	protein-coding	0.020000	0.442786	
mm_96980.1	chr11	70655064	70655264	+	1	NA	NA	NA	-514	NM_011072	18643	Mm.2647	NM_011072	ENSMUSG00000018293	Pfn1	Pfn	profilin 1	protein-coding	0.125000	0.711443	
mm_74553.1	chr8	10865940	10866140	-	1	NA	NA	NA	16414	NR_040705	320014	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.020000	0.512438	
mm_153244.1	chr19	36119618	36119818	-	1	NA	NA	NA	126	NM_013468	107765	Mm.10279	NM_013468	ENSMUSG00000024803	Ankrd1	Alrp|CARP|Crap|MARP1	ankyrin repeat domain 1 (cardiac muscle)	protein-coding	0.010000	0.378109	
mm_160088.1	chr7	14622950	14623150	-	1	NA	NA	NA	16	NR_045119	100417675	Mm.372763	NR_045119	ENSMUSG00000041596	Nlrp5-ps	Gm18756	NLR family, pyrin domain containing 5, pseudogene	pseudo	0.110000	0.691542	
mm_92718.1	chr10	80798160	80798360	-	1	NA	NA	NA	366	NM_023900	78670	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.130000	0.651741	
mm_93838.1	chr10	121603474	121603674	-	1	NA	NA	NA	-16780	NM_019786	56480	Mm.34580	NM_019786	ENSMUSG00000020115	Tbk1	1200008B05Rik|AI462036|AW048562	TANK-binding kinase 1	protein-coding	0.010000	0.358209	
mm_102302.1	chr11	55607806	55608006	-	1	NA	NA	NA	292	NM_001290821	14654	Mm.89320	NM_020492	ENSMUSG00000000263	Glra1	nmf11|oscillator|ot|spasmodic|spd	glycine receptor, alpha 1 subunit	protein-coding	0.075000	0.636816	
mm_50619.1	chr6	50110763	50110963	+	1	NA	NA	NA	622	NM_001164733	56524	Mm.41288	NM_008016	ENSMUSG00000038388	Mpp6	P55t|Pals2	membrane protein, palmitoylated 6 (MAGUK p55 subfamily member 6)	protein-coding	0.080000	0.616915	
mm_159645.1	chr4	144212915	144213115	-	1	NA	NA	NA	2	NM_001177542	97187	Mm.422698	NM_001177542	ENSMUSG00000046262	C87977	C85819	expressed sequence C87977	protein-coding	0.005000	0.452736	
mm_162073.1	chrX	20617294	20617494	+	1	NA	NA	NA	-109	NM_001167775	236732	Mm.279194	NM_145627	ENSMUSG00000031060	Rbm10	E430039K10Rik	RNA binding motif protein 10	protein-coding	0.085000	0.537313	
mm_77570.1	chr8	123432254	123432454	-	1	NA	NA	NA	-10602	NM_001253784	23854	Mm.275127	NM_054046	ENSMUSG00000001482	Def8	AI449518|D8Ertd713e|DEF-8	differentially expressed in FDCP 8	protein-coding	0.025000	0.467662	
mm_5192.1	chr1	13225864	13226064	-	1	NA	NA	NA	-98801	NM_001081209	383491	Mm.309380	NM_001081209	ENSMUSG00000042414	Prdm14	-	PR domain containing 14	protein-coding	0.025000	0.527363	-75(CTCCCTAAAAAC,-,0.00)
mm_73953.1	chr8	120276630	120276830	+	1	NA	NA	NA	-48500	NR_110496	434353	Mm.411793	NR_110496	ENSMUSG00000097960	A330074K22Rik	-	RIKEN cDNA A330074K22 gene	ncRNA	0.120000	0.746269	
mm_134649.1	chr16	21984223	21984423	-	1	NA	NA	NA	11219	NM_001289582	239759	Mm.33192	NM_153404	ENSMUSG00000044626	Liph	C130037N08Rik|D16Wsu119e|H06|Lpdlr|P3|PLA1B|lpd1|lpd2|mPA-PLA1	lipase, member H	protein-coding	0.040000	0.592040	
mm_54646.1	chr6	38875876	38876076	-	1	NA	NA	NA	214	NM_010433	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.155000	0.820896	
mm_126125.1	chr15	78331629	78331829	+	1	NA	NA	NA	5739	NM_007780	12983	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.005000	0.472637	
mm_47473.1	chr5	123720847	123721047	-	1	NA	NA	NA	97	NM_027494	70650	Mm.279427	NM_027494	ENSMUSG00000029427	Zcchc8	5730565F05Rik	zinc finger, CCHC domain containing 8	protein-coding	0.065000	0.636816	
mm_54697.1	chr6	39557684	39557884	-	1	NA	NA	NA	50	NM_172477	209773	Mm.440021	NM_172477	ENSMUSG00000038456	Dennd2a	B930096L08Rik|C130031G22|mKIAA1277	DENN/MADD domain containing 2A	protein-coding	0.180000	0.825871	
mm_151105.1	chr19	47860667	47860867	+	1	NA	NA	NA	-4778	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.025000	0.502488	
mm_90926.1	chr10	12822074	12822274	-	1	NA	NA	NA	39561	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.000000	0.462687	
mm_158161.1	chrX	103482687	103482887	-	1	NA	NA	NA	446	NR_001570	213742	Mm.274770	NR_001463	ENSMUSG00000086503	Xist	A430022B11|AI314753	inactive X specific transcripts	ncRNA	0.020000	0.402985	
mm_113361.1	chr13	32965161	32965361	+	1	NA	NA	NA	-252	NM_011454	20708	Mm.36526	NM_011454	ENSMUSG00000042842	Serpinb6b	NK13|Spi12|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6b	protein-coding	0.025000	0.527363	
mm_109644.1	chr12	112809249	112809449	+	1	NA	NA	NA	374	NM_145450	217887	Mm.186678	NM_145450	ENSMUSG00000037594	BC022687	AW050009|C130001I08Rik|Flj20080	cDNA sequence BC022687	protein-coding	0.050000	0.621891	
mm_150355.1	chr19	34648737	34648937	+	1	NA	NA	NA	7948	NM_008331	15957	Mm.439751	NM_008331	ENSMUSG00000034459	Ifit1	ISG56|Ifi56|P56	interferon-induced protein with tetratricopeptide repeats 1	protein-coding	0.005000	0.447761	
mm_94466.1	chr11	6475009	6475209	+	1	NA	NA	NA	967	NM_011221	19291	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0.080000	0.592040	
mm_57109.1	chr6	122593231	122593431	-	1	NA	NA	NA	9113	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.005000	0.383085	
mm_175.1	chr1	13668656	13668856	+	1	NA	NA	NA	-15	NM_001011873	381246	Mm.311142	NM_001011873	ENSMUSG00000067813	Xkr9	Gm1620|XRG9	X-linked Kx blood group related 9	protein-coding	0.015000	0.388060	
mm_113483.1	chr13	37345296	37345496	+	1	NA	NA	NA	51	NM_010745	17084	Mm.2639	NM_010745	ENSMUSG00000021423	Ly86	MD-1|MD1|ly86_tv2	lymphocyte antigen 86	protein-coding	0.030000	0.507463	
mm_131785.1	chr16	22898038	22898238	+	1	NA	NA	NA	-3752	NR_110508	102632430	Mm.474375	NR_110508		Gm30505	-	predicted gene, 30505	ncRNA	0.010000	0.383085	
mm_125467.1	chr15	52959219	52959419	+	1	NA	NA	NA	246874	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.010000	0.353234	
mm_95004.1	chr11	31882454	31882654	+	1	NA	NA	NA	11614	NM_026252	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.000000	0.348259	
mm_81887.1	chr9	119392150	119392350	+	1	NA	NA	NA	-9928	NM_001313757	11481	Mm.8940	NM_007397	ENSMUSG00000061393	Acvr2b	4930516B21Rik|ActRIIB	activin receptor IIB	protein-coding	0.010000	0.522388	
mm_14906.1	chr2	150311382	150311582	+	1	NA	NA	NA	51283	NM_027017	69277	Mm.272470	NM_027017	ENSMUSG00000063364	3300002I08Rik	2900016H11Rik	RIKEN cDNA 3300002I08 gene	protein-coding	0.040000	0.557214	
mm_16130.1	chr2	170316382	170316582	+	1	NA	NA	NA	-39879	NR_040610	73303	Mm.443297	NR_040610	ENSMUSG00000086999	Bcas1os2	1700040N02Rik	breast carcinoma amplified sequence 1, opposite strand 2	ncRNA	0.020000	0.447761	
mm_69203.1	chr7	127393534	127393734	-	1	NA	NA	NA	-13	NM_198011	101604	Mm.334241	NM_198011	ENSMUSG00000078580	E430018J23Rik	AI480612	RIKEN cDNA E430018J23 gene	protein-coding	0.050000	0.537313	
mm_148621.1	chr19	5414876	5415076	+	1	NA	NA	NA	8161	NR_027938	74931	Mm.388511	NR_015545	ENSMUSG00000086938	4930481A15Rik	-	RIKEN cDNA 4930481A15 gene	ncRNA	0.000000	0.338308	
mm_151431.1	chr19	57119015	57119215	+	1	NA	NA	NA	-91	NM_001103178	226251	Mm.217161	NM_178688	ENSMUSG00000025085	Ablim1	2210411C18Rik|2610209L21Rik|4833406P10Rik|9330196J19Rik|AV079770|AW060987|AW215784|Limab1|mKIAA0059	actin-binding LIM protein 1	protein-coding	0.025000	0.507463	
mm_79940.1	chr9	65908953	65909153	+	1	NA	NA	NA	43	NM_173185	214897	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	0.065000	0.676617	
mm_147233.1	chr18	38250085	38250285	-	1	NA	NA	NA	13	NR_015475	73516	Mm.48776	NR_015475	ENSMUSG00000097080	1700086O06Rik	-	RIKEN cDNA 1700086O06 gene	ncRNA	0.080000	0.651741	
mm_169565.1	chr15	16121643	16121843	-	1	NA	NA	NA	-656358	NM_009869	12565	Mm.439758	NM_009869	ENSMUSG00000025370	Cdh9	-	cadherin 9	protein-coding	0.035000	0.477612	
mm_142851.1	chr17	51805143	51805343	-	1	NA	NA	NA	6811	NM_001163630	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.020000	0.477612	
mm_40899.1	chr5	75155852	75156052	+	1	NA	NA	NA	-214	NM_001083316	18595	Mm.221403	NM_011058	ENSMUSG00000029231	Pdgfra	AI115593|CD140a|Pdgfr-2	platelet derived growth factor receptor, alpha polypeptide	protein-coding	0.065000	0.631841	
mm_92765.1	chr10	81105762	81105962	-	1	NA	NA	NA	-53	NM_023138	26396	Mm.275436	NM_023138	ENSMUSG00000035027	Map2k2	AA589381|MEK2|MK2|Prkmk2	mitogen-activated protein kinase kinase 2	protein-coding	0.110000	0.646766	
mm_63327.1	chr7	126945026	126945226	+	1	NA	NA	NA	4455	NM_001347657	233879	Mm.444143	NM_001039645	ENSMUSG00000046378	Asphd1	A830007L07Rik|Gm168	aspartate beta-hydroxylase domain containing 1	protein-coding	0.065000	0.611940	
mm_115745.1	chr13	17944040	17944240	-	1	NA	NA	NA	77	NM_019491	56044	Mm.27348	NM_019491	ENSMUSG00000008859	Rala	3010001O15Rik|AW322615|Ral|Rasl1	v-ral simian leukemia viral oncogene A (ras related)	protein-coding	0.155000	0.781095	
mm_145659.1	chr18	61130617	61130817	+	1	NA	NA	NA	13249	NR_105949	102466212		NR_105949	ENSMUSG00000098389	Mir6983	Gm27496|mmu-mir-6983	microRNA 6983	ncRNA	0.015000	0.482587	
mm_12387.1	chr2	69870314	69870514	+	1	NA	NA	NA	8852	NM_009278	20823	Mm.10508	NM_009278	ENSMUSG00000068882	Ssb	SS-B	Sjogren syndrome antigen B	protein-coding	0.005000	0.363184	
mm_33104.1	chr4	124703639	124703839	+	1	NA	NA	NA	3040	NM_010213	14201	Mm.331856	NM_010213	ENSMUSG00000032643	Fhl3	SLIM2	four and a half LIM domains 3	protein-coding	0.010000	0.582090	
mm_131443.1	chr16	16213245	16213445	+	1	NA	NA	NA	0	NM_026163	67451	Mm.2252	NM_026163	ENSMUSG00000041957	Pkp2	1200008D14Rik|1200012P04Rik|AA516617|Pkp2l	plakophilin 2	protein-coding	0.100000	0.751244	
mm_23816.1	chr3	79908552	79908752	+	1	NA	NA	NA	22722	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Fam198b	1110032E23Rik|2210419I08Rik|AV011458|Ened	family with sequence similarity 198, member B	protein-coding	0.020000	0.497512	
mm_105348.1	chr11	102999734	102999934	-	1	NA	NA	NA	87	NR_105896	102466988		NR_105896	ENSMUSG00000098613	Mir6931	Gm27303|mmu-mir-6931	microRNA 6931	ncRNA	0.035000	0.577114	
mm_16161.1	chr2	172442094	172442294	+	1	NA	NA	NA	1616	NM_025542	66404	Mm.25157	NM_025542	ENSMUSG00000027502	Rtfdc1	1700067C04Rik|2410001C21Rik|5730427M17Rik|AA589417	replication termination factor 2 domain containing 1	protein-coding	0.010000	0.467662	
mm_160988.1	chr11	105181613	105181813	+	1	NA	NA	NA	186	NM_001294329	24086	Mm.126976	NM_011903	ENSMUSG00000020694	Tlk2	4933403M19Rik|PKU-alpha|PKUalpha|Tlk	tousled-like kinase 2 (Arabidopsis)	protein-coding	0.120000	0.805970	
mm_73456.1	chr8	106510789	106510989	+	1	NA	NA	NA	37	NM_001037809	12560	Mm.4658	NM_007665	ENSMUSG00000061048	Cdh3	AI385538|Cadp|Cdhp|P-cadherin|Pcad	cadherin 3	protein-coding	0.080000	0.666667	
mm_103128.1	chr11	70227193	70227393	-	1	NA	NA	NA	2505	NM_007528	12029	Mm.12930	NM_007528	ENSMUSG00000000317	Bcl6b	Bazf	B cell CLL/lymphoma 6, member B	protein-coding	0.020000	0.512438	
mm_118867.1	chr14	25855498	25855698	+	1	NA	NA	NA	13443	NM_013469	11744	Mm.294083	NM_013469	ENSMUSG00000021866	Anxa11	A830099O17Rik|Anx11	annexin A11	protein-coding	0.020000	0.467662	
mm_34830.1	chr4	155234442	155234642	+	1	NA	NA	NA	-12007	NM_011385	20481	Mm.28520	NM_011385	ENSMUSG00000029050	Ski	2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088	ski sarcoma viral oncogene homolog (avian)	protein-coding	0.015000	0.552239	
mm_138838.1	chr17	39848608	39848808	+	1	NA	NA	NA	5711	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.120000	0.721393	-36(GCTTTTCTGGCC,+,0.00)
mm_157020.1	chrX	7750803	7751003	-	1	NA	NA	NA	-2186	NR_030454	735274		NR_030454	ENSMUSG00000106252	Mir684-1	Mirn684-1	microRNA 684-1	ncRNA	0.090000	0.696517	
mm_70980.1	chr8	27175239	27175439	+	1	NA	NA	NA	-693	NM_001080813	75767	Mm.205335	NM_029423	ENSMUSG00000031488	Rab11fip1	2010200K21Rik|4833414G05Rik|Rcp	RAB11 family interacting protein 1 (class I)	protein-coding	0.035000	0.497512	
mm_147587.1	chr18	56562098	56562298	-	1	NA	NA	NA	100	NM_138600	110695	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	0.055000	0.646766	
mm_17836.1	chr2	34322770	34322970	-	1	NA	NA	NA	49175	NM_001290576	18516	Mm.239941	NM_016768	ENSMUSG00000038718	Pbx3	-	pre B cell leukemia homeobox 3	protein-coding	0.000000	0.258706	-7(TTTTTTATAGCT,+,0.00)
mm_2776.1	chr1	130800538	130800738	+	1	NA	NA	NA	-264	NM_001170632	64435	Mm.31821	NM_144960	ENSMUSG00000026415	Fcamr	-	Fc receptor, IgA, IgM, high affinity	protein-coding	0.010000	0.492537	-34(GGGTATAAGAGG,-,0.00)
mm_96517.1	chr11	68491863	68492063	+	1	NA	NA	NA	-11056	NM_001004435	104709	Mm.234573	NM_001004435	ENSMUSG00000046207	Pik3r6	BB220380|p84|p84 PIKAP|p87(PIKAP)|p87PIKAP	phosphoinositide-3-kinase, regulatory subunit 6	protein-coding	0.005000	0.572139	-26(GCTCTTATAGAC,+,0.00),-24(TCTTATAGACAC,+,0.00)
mm_57270.1	chr6	123288857	123289057	-	1	NA	NA	NA	914	NM_019948	56619	Mm.248327	NM_019948	ENSMUSG00000030142	Clec4e	C86253|Clecsf9|Mincle	C-type lectin domain family 4, member e	protein-coding	0.025000	0.467662	
mm_61084.1	chr7	51622282	51622482	+	1	NA	NA	NA	552	NM_080853	140919	Mm.256618	NM_080853	ENSMUSG00000030500	Slc17a6	2900073D12Rik|DNPI|VGLUT2	solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	protein-coding	0.055000	0.537313	
mm_144788.1	chr18	35888467	35888667	+	1	NA	NA	NA	58749	NM_133687	67393	Mm.94560	NM_133687	ENSMUSG00000046668	Cxxc5	4930415K17Rik	CXXC finger 5	protein-coding	0.085000	0.661692	
mm_13981.1	chr2	121506606	121506806	+	1	NA	NA	NA	-17	NM_001290987	241627	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	0.060000	0.557214	30(TCGCTTAAAGGG,-,0.00)
mm_28974.1	chr3	101029451	101029651	-	1	NA	NA	NA	-56	NM_001167906	630146	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0.015000	0.497512	
mm_163176.1	chr11	87799814	87800014	-	1	NA	NA	NA	6130	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.040000	0.572139	
mm_15727.1	chr2	164084531	164084731	+	1	NA	NA	NA	10453	NM_021420	58231	Mm.234472	NM_021420	ENSMUSG00000018209	Stk4	AI447339|AU020804|Kas-2|Mst1|Ysk3	serine/threonine kinase 4	protein-coding	0.020000	0.388060	65(GACTTTTAAAGA,-,0.00),66(ACTTTTAAAGAT,+,0.00)
mm_162075.1	chrX	21089139	21089339	-	1	NA	NA	NA	-10	NM_183185	245368	Mm.220470	NM_183185	ENSMUSG00000031079	Zfp300	D930016N04Rik	zinc finger protein 300	protein-coding	0.040000	0.437811	
mm_70029.1	chr7	142576412	142576612	-	1	NA	NA	NA	635	NR_030416	735280		NR_030416	ENSMUSG00000076275	Mir675	Mirn675|mir-675|mmu-mir-675	microRNA 675	ncRNA	0.020000	0.532338	
mm_147203.1	chr18	37893292	37893492	-	1	NA	NA	NA	-38732	NR_105945	102465592		NR_105945	ENSMUSG00000098706	Mir6979	Gm27524|mmu-mir-6979	microRNA 6979	ncRNA	0.005000	0.412935	
mm_95518.1	chr11	52117904	52118104	+	1	NA	NA	NA	-8742	NR_037221	100526467		NR_037221	ENSMUSG00000092870	Mir3061	mir-3061|mmu-mir-3061	microRNA 3061	ncRNA	0.045000	0.412935	
mm_118473.1	chr14	11570008	11570208	+	1	NA	NA	NA	16555	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.000000	0.462687	-3(GCTTTTATACCC,+,0.00)
mm_10719.1	chr2	22816427	22816627	+	1	NA	NA	NA	42200	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.005000	0.407960	
mm_69326.1	chr7	128697484	128697684	-	1	NA	NA	NA	8714	NM_001346517	101490	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0.010000	0.417910	
mm_21913.1	chr2	166659659	166659859	-	1	NA	NA	NA	-12959	NR_105783	102465188		NR_105783	ENSMUSG00000098675	Mir6364	Gm27327|mmu-mir-6364	microRNA 6364	ncRNA	0.000000	0.487562	
mm_17237.1	chr2	25581625	25581825	-	1	NA	NA	NA	-1626	NM_001005424	381353	Mm.379511	NM_001005424	ENSMUSG00000029419	Gm996	-	predicted gene 996	protein-coding	0.035000	0.517413	-74(CCTTATAACGCG,+,0.00),-60(CCCTTTAAGTGC,+,0.00)
mm_141814.1	chr17	34605624	34605824	-	1	NA	NA	NA	-137	NM_001163379	55979	Mm.8684	NM_018862	ENSMUSG00000034254	Agpat1	1-AGP|1-AGPAT|AW047140	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase, alpha)	protein-coding	0.095000	0.696517	
mm_65446.1	chr7	25395553	25395753	-	1	NA	NA	NA	334	NM_010719	16890	Mm.158548	NM_010719	ENSMUSG00000003123	Lipe	4933403G17Rik|HSL	lipase, hormone sensitive	protein-coding	0.055000	0.611940	-99(ACCCATTAAAGG,-,0.00),-97(CCATTAAAGGCG,+,0.00)
mm_59297.1	chr7	25088297	25088497	+	1	NA	NA	NA	8778	NR_105855	102465968		NR_105855	ENSMUSG00000098441	Mir6537	Gm27808|mmu-mir-6537	microRNA 6537	ncRNA	0.010000	0.179104	4(ACGTATAAAAAG,-,0.00)
mm_146829.1	chr18	21652006	21652206	-	1	NA	NA	NA	262	NM_001081403	225266	Mm.436836	NM_001081403	ENSMUSG00000042514	Klhl14	6330403N15Rik|AI785250|printor	kelch-like 14	protein-coding	0.055000	0.706468	
mm_133674.1	chr16	92292236	92292436	+	1	NA	NA	NA	-53	NM_134110	246133	Mm.156736	NM_134110	ENSMUSG00000039672	Kcne2	2200002I16Rik|AW048273|MiRP1	potassium voltage-gated channel, Isk-related subfamily, gene 2	protein-coding	0.035000	0.527363	
mm_102854.1	chr11	69398135	69398335	-	1	NA	NA	NA	-1	NM_025915	67020	Mm.390406	NM_025915	ENSMUSG00000045377	Tmem88	2600017H02Rik	transmembrane protein 88	protein-coding	0.055000	0.671642	
mm_163762.1	chr13	120010303	120010503	+	1	NA	NA	NA	41801	NM_001302966	100861753	Mm.165042	NM_001302966	ENSMUSG00000095609	Gm21188	-	predicted gene, 21188	protein-coding	0.000000	0.447761	
mm_106935.1	chr12	8674155	8674355	+	1	NA	NA	NA	-4	NR_027670	80913	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.075000	0.701493	
mm_78248.1	chr9	21670020	21670220	+	1	NA	NA	NA	-53456	NM_001252658	16835	Mm.3213	NM_010700	ENSMUSG00000032193	Ldlr	Hlb301	low density lipoprotein receptor	protein-coding	0.015000	0.562189	
mm_107844.1	chr12	69310424	69310624	+	1	NA	NA	NA	13843	NM_027117	69554	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0.005000	0.343284	
mm_10065.1	chr1	193509985	193510185	-	1	NA	NA	NA	-2555	NR_029592	387201		NR_029592	ENSMUSG00000065533	Mir205	Mirn205|mir-205|mmu-mir-205	microRNA 205	ncRNA	0.010000	0.507463	86(CCCTATAGAGCA,+,0.00)
mm_39231.1	chr4	156234725	156234925	-	1	NA	NA	NA	32	NM_198305	231003	Mm.423038	NM_198305	ENSMUSG00000078484	Klhl17	AL022703|BC058738	kelch-like 17	protein-coding	0.155000	0.761194	
mm_1500.1	chr1	72236369	72236569	+	1	NA	NA	NA	-24162	NM_001005423	381269	Mm.422636	NM_001005423	ENSMUSG00000039395	Mreg	Gm974|Wdt2|dsu	melanoregulin	protein-coding	0.075000	0.606965	
mm_53673.1	chr6	141866250	141866450	+	1	NA	NA	NA	-10179	NM_030687	28250	Mm.255586	NM_030687	ENSMUSG00000030237	Slco1a4	AI785519|Oatp1a4|Oatp2|Slc21a5	solute carrier organic anion transporter family, member 1a4	protein-coding	0.020000	0.422886	
mm_143135.1	chr17	57218038	57218238	-	1	NA	NA	NA	-910	NR_105944	102465591		NR_105944	ENSMUSG00000099066	Mir6978	Gm27858|mmu-mir-6978	microRNA 6978	ncRNA	0.010000	0.497512	-29(CTTTTTAAAAAG,+,0.00),-29(CTTTTTAAAAAG,-,0.00)
mm_68965.1	chr7	126584291	126584491	-	1	NA	NA	NA	-617	NM_138310	171504	Mm.170665	NM_138310	ENSMUSG00000042759	Apobr	Apob-48r|Apob48r	apolipoprotein B receptor	protein-coding	0.010000	0.462687	
mm_136455.1	chr16	94997579	94997779	-	1	NA	NA	NA	17	NM_001025584	16522	Mm.328720	NM_010606	ENSMUSG00000043301	Kcnj6	BIR1|GIRK2|KATP2|KCNJ7|Kir3.2|weaver|wv	potassium inwardly-rectifying channel, subfamily J, member 6	protein-coding	0.095000	0.587065	
mm_25293.1	chr3	105891942	105892142	+	1	NA	NA	NA	-12379	NM_009631	11542	Mm.235024	NM_009631	ENSMUSG00000000562	Adora3	A3AR|A3R|AA3R|ARA3|Gpcr2	adenosine A3 receptor	protein-coding	0.005000	0.502488	
mm_28713.1	chr3	95658449	95658649	-	1	NA	NA	NA	-172	NM_008562	17210	Mm.1639	NM_008562	ENSMUSG00000038612	Mcl1	AW556805|Mcl-1	myeloid cell leukemia sequence 1	protein-coding	0.085000	0.606965	
mm_39323.1	chr5	8422817	8423017	+	1	NA	NA	NA	79	NM_178766	319653	Mm.146262	NM_178766	ENSMUSG00000054099	Slc25a40	B230315F11Rik	solute carrier family 25, member 40	protein-coding	0.110000	0.731343	
mm_81698.1	chr9	111205672	111205872	+	1	NA	NA	NA	65836	NM_026810	17350	Mm.486383	NM_026810	ENSMUSG00000032498	Mlh1	1110035C23Rik|AI317206|AI325952|AI561766	mutL homolog 1	protein-coding	0.020000	0.457711	
mm_72134.1	chr8	71908525	71908725	+	1	NA	NA	NA	19	NM_001166645	382019	Mm.251482	NM_001166645	ENSMUSG00000089857	Zfp882	ENSMUSG00000052439|Gm15468|OTTMUSG00000022410	zinc finger protein 882	protein-coding	0.060000	0.606965	
mm_148023.1	chr18	68589343	68589543	-	1	NA	NA	NA	-149957	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0.015000	0.447761	
mm_83480.1	chr9	45906766	45906966	-	1	NA	NA	NA	11	NM_178709	235315	Mm.3255	NM_178709	ENSMUSG00000042790	Rnf214	D130054N24Rik	ring finger protein 214	protein-coding	0.115000	0.726368	
mm_157938.1	chrX	85700260	85700460	-	1	NA	NA	NA	76459	NM_001294140	14933	Mm.246682	NM_008194	ENSMUSG00000025059	Gk	D930012N15Rik|Gyk	glycerol kinase	protein-coding	0.000000	0.378109	73(ACCTTTTAAAAG,-,0.00),74(CCTTTTAAAAGA,+,0.00),74(CCTTTTAAAAGA,-,0.00),75(CTTTTAAAAGAC,+,0.00)
mm_40697.1	chr5	65851041	65851241	+	1	NA	NA	NA	-12428	NM_001081105	74734	Mm.20323	NM_001081105	ENSMUSG00000029204	Rhoh	5830400A04Rik|AU019774|Arhh	ras homolog family member H	protein-coding	0.030000	0.467662	
mm_109193.1	chr12	108605686	108605886	+	1	NA	NA	NA	20	NM_001163395	14026	Mm.238841	NM_007965	ENSMUSG00000021262	Evl	AI528774	Ena-vasodilator stimulated phosphoprotein	protein-coding	0.015000	0.537313	
mm_34876.1	chr4	155563638	155563838	+	1	NA	NA	NA	-77	NM_001159637	192185	Mm.28347	NM_138671	ENSMUSG00000029063	Nadk	4432404C02Rik|BC004012	NAD kinase	protein-coding	0.090000	0.676617	
mm_109103.1	chr12	105032572	105032772	+	1	NA	NA	NA	54	NM_028419	73046	Mm.29128	NM_028419	ENSMUSG00000021102	Glrx5	-	glutaredoxin 5	protein-coding	0.090000	0.691542	
mm_115734.1	chr13	17783508	17783708	-	1	NA	NA	NA	21489	NM_001081058	69562	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.005000	0.358209	
mm_97851.1	chr11	83069414	83069614	+	1	NA	NA	NA	4402	NM_011408	20556	Mm.278689	NM_011408	ENSMUSG00000072620	Slfn2	Shlf2	schlafen 2	protein-coding	0.025000	0.442786	
mm_12846.1	chr2	83644384	83644584	+	1	NA	NA	NA	-94	NM_026934	69082	Mm.27804	NM_026934	ENSMUSG00000027091	Zc3h15	1700006A17Rik|1810012H02Rik|2610312B22Rik|FM22|Ierepo4	zinc finger CCCH-type containing 15	protein-coding	0.145000	0.721393	
mm_124653.1	chr15	5237371	5237571	+	1	NA	NA	NA	6716	NM_001136079	19219	Mm.18509	NM_008965	ENSMUSG00000039942	Ptger4	EP4|Ptgerep4	prostaglandin E receptor 4 (subtype EP4)	protein-coding	0.030000	0.492537	
mm_138497.1	chr17	35200655	35200855	+	1	NA	NA	NA	1252	NM_013693	21926	Mm.1293	NM_013693	ENSMUSG00000024401	Tnf	DIF|TNF-a|TNF-alpha|TNFSF2|TNFalpha|Tnfa|Tnfsf1a|Tnlg1f	tumor necrosis factor	protein-coding	0.020000	0.537313	0(GTCTCTAAGAGC,-,0.00)
mm_10141.1	chr2	4165867	4166067	+	1	NA	NA	NA	13104	NM_172475	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|OTTMUSG00000010806|mKIAA1294	FERM domain containing 4A	protein-coding	0.005000	0.502488	
mm_92887.1	chr10	82764004	82764204	-	1	NA	NA	NA	37	NM_010914	18045	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	0.105000	0.701493	
mm_139036.1	chr17	46163371	46163571	+	1	NA	NA	NA	2439	NM_001145979	56055	Mm.22147	NM_019581	ENSMUSG00000023952	Gtpbp2	nmf205	GTP binding protein 2	protein-coding	0.010000	0.502488	
mm_149830.1	chr19	24529104	24529304	+	1	NA	NA	NA	26623	NM_008846	18719	Mm.217214	NM_008846	ENSMUSG00000024867	Pip5k1b	PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7	phosphatidylinositol-4-phosphate 5-kinase, type 1 beta	protein-coding	0.005000	0.417910	
mm_57087.1	chr6	122586362	122586562	-	1	NA	NA	NA	15982	NM_031159	11810	Mm.3333	NM_031159	ENSMUSG00000040613	Apobec1	Cdar1	apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	protein-coding	0.000000	0.218905	
mm_107302.1	chr12	30912080	30912280	+	1	NA	NA	NA	511	NM_013709	24057	Mm.218624	NM_013709	ENSMUSG00000020669	Sh3yl1	AI314953|Ray|YSC84	Sh3 domain YSC-like 1	protein-coding	0.070000	0.636816	
mm_87901.1	chr10	62071973	62072173	+	1	NA	NA	NA	38940	NM_027251	69894	Mm.294126	NM_027251	ENSMUSG00000020083	2010107G23Rik	AA545165	RIKEN cDNA 2010107G23 gene	protein-coding	0.040000	0.542289	
mm_69485.1	chr7	133810557	133810757	-	1	NA	NA	NA	-27872	NM_001286031	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.005000	0.467662	
mm_104971.1	chr11	100205980	100206180	-	1	NA	NA	NA	-50	NM_001313957	16664	Mm.439898	NM_016958	ENSMUSG00000045545	Krt14	AI626930|CK-14|K14|Krt-1.14|Krt1-14	keratin 14	protein-coding	0.005000	0.487562	
mm_115777.1	chr13	19311268	19311468	-	1	NA	NA	NA	84445	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.010000	0.383085	
mm_117198.1	chr13	63968616	63968816	-	1	NA	NA	NA	120485	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.005000	0.487562	-54(GGGCTTTAAGGG,-,0.00)
mm_101281.1	chr11	21571677	21571877	-	1	NA	NA	NA	157	NM_008618	17449	Mm.212703	NM_008618	ENSMUSG00000020321	Mdh1	B230377B03Rik|D17921|MDH-s|MDHA|Mor-2|Mor2	malate dehydrogenase 1, NAD (soluble)	protein-coding	0.045000	0.606965	
mm_84509.1	chr9	67030990	67031190	-	1	NA	NA	NA	12781	NM_001164252	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.005000	0.363184	
mm_128268.1	chr15	36793386	36793586	-	1	NA	NA	NA	1052	NM_011740	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.130000	0.756219	
mm_63240.1	chr7	126584878	126585078	+	1	NA	NA	NA	-30	NM_138310	171504	Mm.170665	NM_138310	ENSMUSG00000042759	Apobr	Apob-48r|Apob48r	apolipoprotein B receptor	protein-coding	0.020000	0.592040	
mm_113308.1	chr13	30752634	30752834	+	1	NA	NA	NA	3501	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.000000	0.527363	
mm_32687.1	chr4	115847683	115847883	+	1	NA	NA	NA	8585	NM_001285487	17346	Mm.209327	NM_021461	ENSMUSG00000028708	Mknk1	2410048M24Rik|Mnk1	MAP kinase-interacting serine/threonine kinase 1	protein-coding	0.005000	0.477612	
mm_64338.1	chr7	142376618	142376818	+	1	NA	NA	NA	-2972	NM_001347541	320802	Mm.154486	NM_177265	ENSMUSG00000045777	Ifitm10	6330512M04Rik|AI848576|DSPA3	interferon induced transmembrane protein 10	protein-coding	0.030000	0.557214	
mm_51882.1	chr6	90597581	90597781	+	1	NA	NA	NA	-7199	NM_027868	71699	Mm.272633	NM_027868	ENSMUSG00000030089	Slc41a3	1010001P06Rik|AI480742|SLC41A1-L2	solute carrier family 41, member 3	protein-coding	0.005000	0.402985	
mm_131710.1	chr16	20837060	20837260	+	1	NA	NA	NA	-102649	NM_009379	21832	Mm.3943	NM_009379	ENSMUSG00000022847	Thpo	Mgdf|Ml|Mpllg|Tpo	thrombopoietin	protein-coding	0.015000	0.482587	
mm_114385.1	chr13	63246778	63246978	+	1	NA	NA	NA	6849	NR_110521	72061	Mm.188105	NM_028079	ENSMUSG00000021458	2010111I01Rik	2300006M17Rik|AP-O|AW742919|Aopep|ApO|mir-23b|mir-24-1|mir-27b	RIKEN cDNA 2010111I01 gene	protein-coding	0.015000	0.472637	
mm_171317.1	chr3	95929282	95929482	+	1	NA	NA	NA	125	NM_023210	66471	Mm.218657	NM_023210	ENSMUSG00000015749	Anp32e	2810018A15Rik|AI047746|AI326868|CPD1|LANP-L|LANPL|mLANP-L	acidic (leucine-rich) nuclear phosphoprotein 32 family, member E	protein-coding	0.080000	0.606965	
mm_85831.1	chr9	110460971	110461171	-	1	NA	NA	NA	15623	NM_177771	270201	Mm.41744	NM_177771	ENSMUSG00000054792	Klhl18	A930041K15|AW545966	kelch-like 18	protein-coding	0.025000	0.512438	
mm_55270.1	chr6	53820754	53820954	-	1	NA	NA	NA	-29	NM_025817	66873	Mm.422727	NM_025817	ENSMUSG00000043496	Tril	1200009O22Rik|AI316813|mKIAA0644	TLR4 interactor with leucine-rich repeats	protein-coding	0.090000	0.661692	
mm_62982.1	chr7	120203839	120204039	+	1	NA	NA	NA	-25	NM_026458	67928	Mm.158178	NM_026458	ENSMUSG00000062017	Abca14	1700110B15Rik|4930539G24Rik	ATP-binding cassette, sub-family A (ABC1), member 14	protein-coding	0.095000	0.656716	
mm_112630.1	chr13	15930134	15930334	+	1	NA	NA	NA	-81617	NM_008380	16323	Mm.8042	NM_008380	ENSMUSG00000041324	Inhba	-	inhibin beta-A	protein-coding	0.005000	0.492537	
mm_99719.1	chr11	106276621	106276821	+	1	NA	NA	NA	49	NM_029467	75870	Mm.159608	NM_029467	ENSMUSG00000020712	Tcam1	4930570F09Rik|AI429105	testicular cell adhesion molecule 1	protein-coding	0.085000	0.601990	
mm_19987.1	chr2	118549540	118549740	-	1	NA	NA	NA	46	NM_138313	171543	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.105000	0.681592	
mm_50884.1	chr6	56124986	56125186	+	1	NA	NA	NA	107571	NM_011153	19051	Mm.42096	NM_011153	ENSMUSG00000002930	Ppp1r17	G-substrate|Gsbs|Ppp1r2	protein phosphatase 1, regulatory subunit 17	protein-coding	0.000000	0.393035	-82(GCTTTAATAGAG,+,0.00)
mm_133637.1	chr16	91663864	91664064	+	1	NA	NA	NA	16140	NM_178880	20658	Mm.46401	NM_019973	ENSMUSG00000022961	Son	2900011L12Rik|AA409051|AU067731|C81487|mKIAA1019|nrebp	Son DNA binding protein	protein-coding	0.005000	0.328358	
mm_57754.1	chr6	129225344	129225544	-	1	NA	NA	NA	12601	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.000000	0.373134	-33(GGATATATAAAG,-,0.00)
mm_136745.1	chr17	8434174	8434374	+	1	NA	NA	NA	-149	NM_009309	20997	Mm.913	NM_009309	ENSMUSG00000062327	T	Bra|D17Mit170|Low|Lr|T1|Tl2|Tl3|cou|me75	brachyury	protein-coding	0.060000	0.646766	
mm_146775.1	chr18	20059237	20059437	-	1	NA	NA	NA	217	NM_013505	13506	Mm.280547	NM_013505	ENSMUSG00000024331	Dsc2	AW228162	desmocollin 2	protein-coding	0.070000	0.621891	
mm_136055.1	chr16	78577086	78577286	-	1	NA	NA	NA	-498	NM_025967	67102	Mm.37332	NM_025967	ENSMUSG00000022864	D16Ertd472e	1700010I10Rik|2310009O17Rik|E330003K22Rik|Eurl	DNA segment, Chr 16, ERATO Doi 472, expressed	protein-coding	0.030000	0.363184	
mm_166585.1	chr6	54681690	54681890	+	1	NA	NA	NA	166	NM_001289740	68235	Mm.233860	NM_026629	ENSMUSG00000038065	Mturn	2410066E13Rik|AI448550|B230212L03Rik	maturin, neural progenitor differentiation regulator homolog (Xenopus)	protein-coding	0.125000	0.711443	
mm_52153.1	chr6	98004669	98004869	+	1	NA	NA	NA	12986	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	microphthalmia-associated transcription factor	protein-coding	0.005000	0.333333	
mm_58140.1	chr6	141856113	141856313	-	1	NA	NA	NA	-42	NM_030687	28250	Mm.255586	NM_030687	ENSMUSG00000030237	Slco1a4	AI785519|Oatp1a4|Oatp2|Slc21a5	solute carrier organic anion transporter family, member 1a4	protein-coding	0.010000	0.447761	
mm_142085.1	chr17	35744019	35744219	-	1	NA	NA	NA	-28331	NR_045459	74601	Mm.410840	NR_045459	ENSMUSG00000092171	4833427F10Rik	-	RIKEN cDNA 4833427F10 gene	ncRNA	0.025000	0.552239	-21(CTATTTAGAGTC,+,0.00)
mm_119093.1	chr14	30892510	30892710	+	1	NA	NA	NA	6134	NM_001289632	16427	Mm.34819	NM_018746	ENSMUSG00000021922	Itih4	ITI-HC4|Itih-4|PK-120	inter alpha-trypsin inhibitor, heavy chain 4	protein-coding	0.020000	0.542289	
mm_37369.1	chr4	120924820	120925020	-	1	NA	NA	NA	85	NM_028457	73172	Mm.151436	NM_028457	ENSMUSG00000028629	Exo5	3110037I16Rik|AV297100|Dem1|Exo V|mExo5	exonuclease 5	protein-coding	0.055000	0.616915	
mm_62353.1	chr7	100498765	100498965	+	1	NA	NA	NA	5507	NM_011671	22228	Mm.171378	NM_011671	ENSMUSG00000033685	Ucp2	Slc25a8	uncoupling protein 2 (mitochondrial, proton carrier)	protein-coding	0.045000	0.597015	
mm_136679.1	chr17	6430086	6430286	+	1	NA	NA	NA	74	NM_009342	21648	Mm.1948	NM_009342	ENSMUSG00000096255	Dynlt1b	AGS2|Dynlt1|Tctex-1|Tctex1	dynein light chain Tctex-type 1B	protein-coding	0.095000	0.666667	
mm_72826.1	chr8	88244585	88244785	+	1	NA	NA	NA	-27718	NM_007406	11513	Mm.288206	NM_007406	ENSMUSG00000031659	Adcy7	AA407758	adenylate cyclase 7	protein-coding	0.015000	0.393035	
mm_69597.1	chr7	135716251	135716451	-	1	NA	NA	NA	28	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.160000	0.791045	
mm_1098.1	chr1	59710433	59710633	+	1	NA	NA	NA	5725	NR_028521	100217421		NR_028521		Snord11	MBII-95	small nucleolar RNA, C/D box 11	snoRNA	0.015000	0.427861	
mm_151150.1	chr19	53140515	53140715	+	1	NA	NA	NA	172	NM_001164101	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.075000	0.626866	
mm_7010.1	chr1	86492135	86492335	-	1	NA	NA	NA	-34501	NM_008972	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.010000	0.557214	
mm_95294.1	chr11	46055921	46056121	+	1	NA	NA	NA	37	NM_001291891	11492	Mm.89940	NM_009616	ENSMUSG00000011256	Adam19	AL024287|MADDAM|MTLNB|Mltnb	a disintegrin and metallopeptidase domain 19 (meltrin beta)	protein-coding	0.070000	0.676617	-11(GCTTTTAGGCCG,+,0.00)
mm_128101.1	chr15	27923616	27923816	-	1	NA	NA	NA	102132	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.050000	0.547264	
mm_155695.1	chrX	94367023	94367223	+	1	NA	NA	NA	-1	NR_004438	621156	Mm.343319	NR_004438		Apoo-ps	Apoo|EG621156	apolipoprotein O, pseudogene	pseudo	0.050000	0.606965	-31(TTTTTTATAGTG,+,0.00)
mm_119821.1	chr14	54232146	54232346	+	1	NA	NA	NA	21683	NM_001113358	13135	Mm.319038	NM_010015	ENSMUSG00000022174	Dad1	AI323713	defender against cell death 1	protein-coding	0.020000	0.462687	
mm_130290.1	chr15	97008803	97009003	-	1	NA	NA	NA	47053	NM_027052	69354	Mm.250980	NM_027052	ENSMUSG00000022464	Slc38a4	1110012E16Rik|1700012A18Rik|Ata3|mATA3|mNAT3	solute carrier family 38, member 4	protein-coding	0.030000	0.512438	
mm_60266.1	chr7	43841813	43842013	+	1	NA	NA	NA	-356	NM_026806	68668	Mm.458122	NM_026806	ENSMUSG00000074155	Klk5	1110030O19Rik	kallikrein related-peptidase 5	protein-coding	0.000000	0.606965	
mm_108078.1	chr12	73945939	73946139	+	1	NA	NA	NA	-18491	NM_178392	75627	Mm.25937	NM_178392	ENSMUSG00000021113	Snapc1	2700033G17Rik|AU015787	small nuclear RNA activating complex, polypeptide 1	protein-coding	0.000000	0.323383	
mm_102834.1	chr11	69197736	69197936	-	1	NA	NA	NA	7	NM_009661	11688	Mm.289672	NM_009661	ENSMUSG00000020891	Alox8	15-LOX-2|15-LOX-B|8-LOX|8S-LOX|Alox15b	arachidonate 8-lipoxygenase	protein-coding	0.025000	0.557214	
mm_50346.1	chr6	48589392	48589592	+	1	NA	NA	NA	47	NM_183309	330305	Mm.123868	NM_183309	ENSMUSG00000052730	Gm5111	A630038D02|EG330305	predicted gene 5111	protein-coding	0.020000	0.507463	
mm_72184.1	chr8	72349988	72350188	+	1	NA	NA	NA	31026	NM_008452	16598	Mm.26938	NM_008452	ENSMUSG00000055148	Klf2	Lklf	Kruppel-like factor 2 (lung)	protein-coding	0.010000	0.432836	
mm_158751.1	chrX	165327299	165327499	-	1	NA	NA	NA	-418	NM_183427	237213	Mm.113877	NM_183427	ENSMUSG00000018589	Glra2	-	glycine receptor, alpha 2 subunit	protein-coding	0.030000	0.477612	
mm_173351.1	chrY	90813484	90813684	+	1	NA	NA	NA	25822	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.020000	0.462687	
mm_155630.1	chrX	84772610	84772810	+	1	NA	NA	NA	-275585	NM_001314038	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.015000	0.432836	-33(GACTATTAAAGC,-,0.00),76(GCATTTTAAAGC,-,0.00)
mm_31613.1	chr4	59017590	59017790	+	1	NA	NA	NA	14497	NM_001033165	72429	Mm.317801	NM_001033165	ENSMUSG00000070972	Dnajc25	2010109C08Rik|2010203O07Rik	DnaJ heat shock protein family (Hsp40) member C25	protein-coding	0.020000	0.417910	
mm_140811.1	chr17	22519281	22519481	-	1	NA	NA	NA	53892	NM_001104573	210876	Mm.390947	NM_001104573	ENSMUSG00000095093	Vmn2r111	EG210876|V2rp2	vomeronasal 2, receptor 111	protein-coding	0.005000	0.517413	
mm_5691.1	chr1	43186055	43186255	-	1	NA	NA	NA	10606	NM_001289533	14200	Mm.6799	NM_010212	ENSMUSG00000008136	Fhl2	FHL-2|SLIM-3|SLIM3	four and a half LIM domains 2	protein-coding	0.015000	0.477612	
mm_84279.1	chr9	62811573	62811773	-	1	NA	NA	NA	-25	NM_010193	14155	Mm.24069	NM_010193	ENSMUSG00000032244	Fem1b	mKIAA0396	feminization 1 homolog b (C. elegans)	protein-coding	0.140000	0.756219	
mm_114186.1	chr13	55693017	55693217	+	1	NA	NA	NA	-7	NM_181278	78521	Mm.28449	NM_181278	ENSMUSG00000045767	B230219D22Rik	AA119856|D530037I19Rik	RIKEN cDNA B230219D22 gene	protein-coding	0.170000	0.756219	
mm_41639.1	chr5	98030610	98030810	+	1	NA	NA	NA	252	NM_133738	71914	Mm.24842	NM_133738	ENSMUSG00000029338	Antxr2	2310046B19Rik|AW561899|CMG-2|CMG2|cI-35	anthrax toxin receptor 2	protein-coding	0.060000	0.661692	
mm_82998.1	chr9	36693046	36693246	-	1	NA	NA	NA	43	NR_040741	75567	Mm.426883	NR_040741	ENSMUSG00000098304	1700027I24Rik	-	RIKEN cDNA 1700027I24 gene	ncRNA	0.005000	0.447761	
mm_96925.1	chr11	70510090	70510290	+	1	NA	NA	NA	4426	NM_001013607	327956	Mm.244514	NM_001013607	ENSMUSG00000020830	Vmo1	Gm741	vitelline membrane outer layer 1 homolog (chicken)	protein-coding	0.050000	0.611940	
mm_19237.1	chr2	84715040	84715240	-	1	NA	NA	NA	24	NM_144887	228136	Mm.288508	NM_144887	ENSMUSG00000034075	Zdhhc5	1110032A17Rik|AI451382|Zisp	zinc finger, DHHC domain containing 5	protein-coding	0.185000	0.800995	
mm_151556.1	chr19	59459437	59459637	+	1	NA	NA	NA	847	NM_010132	13797	Mm.245394	NM_010132	ENSMUSG00000043969	Emx2	Pdo	empty spiracles homeobox 2	protein-coding	0.115000	0.716418	
mm_45939.1	chr5	90243702	90243902	-	1	NA	NA	NA	-19806	NM_001163456	231430	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	0.015000	0.477612	
mm_69771.1	chr7	141016697	141016897	-	1	NA	NA	NA	95	NM_001033632	213002	Mm.276440	NM_001033632	ENSMUSG00000059108	Ifitm6	A330075D07|Dspa2f|Fgls5|fragilis5	interferon induced transmembrane protein 6	protein-coding	0.010000	0.462687	
mm_99568.1	chr11	103954034	103954234	+	1	NA	NA	NA	-78	NM_008740	18195	Mm.260117	NM_008740	ENSMUSG00000034187	Nsf	AI316878|AU020090|AU067812|SKD2	N-ethylmaleimide sensitive fusion protein	protein-coding	0.160000	0.756219	
mm_151872.1	chr19	5797963	5798163	-	1	NA	NA	NA	-2082	NR_144621	109146451		NR_144621		Mascrna	-	Malat1-associated small cytoplasmic RNA	scRNA	0.010000	0.402985	67(GAGTTTAAATGC,-,0.00)
mm_37686.1	chr4	129227803	129228003	-	1	NA	NA	NA	8	NM_001285866	97130	Mm.331907	NM_001033189	ENSMUSG00000050390	C77080	Kiaa1522|mKIAA1522	expressed sequence C77080	protein-coding	0.030000	0.611940	
mm_88106.1	chr10	69104844	69105044	+	1	NA	NA	NA	-103608	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.015000	0.442786	
mm_158342.1	chrX	134162409	134162609	-	1	NA	NA	NA	-581	NM_183319	331524	Mm.235055	NM_183319	ENSMUSG00000031258	Xkrx	A630026F04	X-linked Kx blood group related, X-linked	protein-coding	0.030000	0.562189	
mm_103592.1	chr11	78246110	78246310	-	1	NA	NA	NA	464	NM_009143	20316	Mm.20755	NM_009143	ENSMUSG00000002064	Sdf2	AI853825	stromal cell derived factor 2	protein-coding	0.065000	0.601990	
mm_137007.1	chr17	17826856	17827056	+	1	NA	NA	NA	-3232	NR_029536	387230		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	0.035000	0.671642	
mm_70746.1	chr8	19194226	19194426	+	1	NA	NA	NA	-2	NM_183026	244332	Mm.358923	NM_183026	ENSMUSG00000046354	Defb14	BD-14	defensin beta 14	protein-coding	0.010000	0.427861	
mm_91268.1	chr10	23787134	23787334	-	1	NA	NA	NA	-25	NM_011295	20042	Mm.371846	NM_011295	ENSMUSG00000061983	Rps12	-	ribosomal protein S12	protein-coding	0.100000	0.636816	3(GCTTAAATACCG,+,0.00)
mm_88913.1	chr10	81179843	81180043	+	1	NA	NA	NA	982	NR_028549	100217454		NR_028549	ENSMUSG00000064441	Snord37	MBII-376	small nucleolar RNA, C/D box 37	snoRNA	0.030000	0.537313	
mm_158200.1	chrX	105307897	105308097	-	1	NA	NA	NA	36372	NR_029910	723861		NR_029910	ENSMUSG00000065499	Mir384	Mirn384|mir-384|mmu-mir-384	microRNA 384	ncRNA	0.000000	0.452736	
mm_70593.1	chr8	13200859	13201059	+	1	NA	NA	NA	-335	NM_025768	66790	Mm.34901	NM_025768	ENSMUSG00000038515	Grtp1	5430401C05Rik|C81211|Tbc1d6	GH regulated TBC protein 1	protein-coding	0.030000	0.482587	
mm_143474.1	chr17	71256256	71256456	-	1	NA	NA	NA	51702	NM_001164885	64898	Mm.227924	NM_022882	ENSMUSG00000024052	Lpin2	2610511G02Rik|AI481352|AW742896	lipin 2	protein-coding	0.030000	0.621891	
mm_5942.1	chr1	56637358	56637558	-	1	NA	NA	NA	-7	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	0.005000	0.437811	
mm_113595.1	chr13	41001140	41001340	+	1	NA	NA	NA	230	NM_026550	68083	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0.120000	0.661692	-35(GCGCCTAAAAGG,-,0.00)
mm_109410.1	chr12	110460667	110460867	+	1	NA	NA	NA	13588	NM_001135001	26931	Mm.240396	NM_012023	ENSMUSG00000017843	Ppp2r5c	2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044	protein phosphatase 2, regulatory subunit B', gamma	protein-coding	0.040000	0.606965	
mm_82021.1	chr9	121759650	121759850	+	1	NA	NA	NA	193	NR_033503	320301	Mm.373883	NR_033503		E530011L22Rik	-	RIKEN cDNA E530011L22 gene	ncRNA	0.095000	0.696517	
mm_137733.1	chr17	29318768	29318968	+	1	NA	NA	NA	-14	NM_023734	74116	Mm.30950	NM_023734	ENSMUSG00000024011	Pi16	1200009H11Rik|Cripi|PI-16	peptidase inhibitor 16	protein-coding	0.010000	0.542289	
mm_29429.1	chr3	109022231	109022431	-	1	NA	NA	NA	5276	NM_001163567	329739	Mm.69013	NM_001163567	ENSMUSG00000040339	Fam102b	1600010D10Rik|B430201A12Rik	family with sequence similarity 102, member B	protein-coding	0.010000	0.323383	
mm_146556.1	chr18	6223977	6224177	-	1	NA	NA	NA	17447	NM_008448	16573	Mm.223744	NM_008448	ENSMUSG00000006740	Kif5b	AL022807|Khc|Khcs|Kns1|Ukhc	kinesin family member 5B	protein-coding	0.000000	0.333333	
mm_94336.1	chr11	4637662	4637862	+	1	NA	NA	NA	-31	NM_029291	75452	Mm.439906	NM_029291	ENSMUSG00000020412	Ascc2	1700011I11Rik|2610034L15Rik|AI482016|ASC1p100|AW046480	activating signal cointegrator 1 complex subunit 2	protein-coding	0.065000	0.646766	
mm_32928.1	chr4	119195350	119195550	+	1	NA	NA	NA	-75	NM_001038998	69216	Mm.36697	NM_024462	ENSMUSG00000028643	Svbp	2410005K17Rik|AI851162|Ccdc23	small vasohibin binding protein	protein-coding	0.135000	0.776119	
mm_122703.1	chr14	52180081	52180281	-	1	NA	NA	NA	17058	NM_033618	114741	Mm.21662	NM_033618	ENSMUSG00000035726	Supt16	Cdc68|Fact140|Spt16|Supt16h	suppressor of Ty 16	protein-coding	0.015000	0.402985	
mm_156980.1	chrX	7188628	7188828	-	1	NA	NA	NA	-14	NM_016691	12728	Mm.486257	NM_016691	ENSMUSG00000004317	Clcn5	5430408K11Rik|ClC-5|Clc4-1|Clc5|Clcn4-1|D930009B12Rik|DXImx42e|Sfc13|T25545	chloride channel, voltage-sensitive 5	protein-coding	0.030000	0.497512	
mm_55024.1	chr6	48841333	48841533	-	1	NA	NA	NA	-50	NM_025326	66058	Mm.27061	NM_025326	ENSMUSG00000023367	Tmem176a	0610011I04Rik|AU040201|AU041743|Keg2	transmembrane protein 176A	protein-coding	0.010000	0.621891	18(GCCCCTTTAGGG,-,0.00),20(CCCTTTAGGGGT,+,0.00)
mm_66898.1	chr7	59930734	59930934	-	1	NA	NA	NA	43597	NR_015456	52480	Mm.482346	NR_015456	ENSMUSG00000100826	Snhg14	AU018661|D7Ertd715e|Lncat	small nucleolar RNA host gene 14	ncRNA	0.005000	0.338308	
mm_151933.1	chr19	5800212	5800412	-	1	NA	NA	NA	2360	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.015000	0.417910	
mm_31008.1	chr4	40260411	40260611	+	1	NA	NA	NA	-9068	NR_045265	100504309	Mm.392019	NR_045265		Toporsos	2010003O02Rik	topoisomerase I binding, arginine/serine-rich, opposite strand	ncRNA	0.040000	0.462687	
mm_138338.1	chr17	34898859	34899059	+	1	NA	NA	NA	-15	NM_001286573	110147	Mm.35345	NM_145830	ENSMUSG00000013787	Ehmt2	Bat8|D17Ertd710e|G9a|KMT1C|NG36	euchromatic histone lysine N-methyltransferase 2	protein-coding	0.130000	0.840796	
mm_61311.1	chr7	67998119	67998319	+	1	NA	NA	NA	45962	NM_010513	16001	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.005000	0.378109	
mm_144488.1	chr18	24168540	24168740	+	1	NA	NA	NA	-36704	NM_013814	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.005000	0.452736	-33(TCACATAAAAGG,-,0.00)
mm_60773.1	chr7	45559091	45559291	+	1	NA	NA	NA	4263	NM_025330	66065	Mm.285710	NM_025330	ENSMUSG00000030825	Hsd17b14	0610039E24Rik|Dhrs10|retSDR3	hydroxysteroid (17-beta) dehydrogenase 14	protein-coding	0.010000	0.577114	
mm_89343.1	chr10	87935995	87936195	+	1	NA	NA	NA	-30576	NR_000040	22172	Mm.391420	NR_000040		Tyms-ps	-	thymidylate synthase, pseudogene	pseudo	0.005000	0.303483	-74(GTCTTTTAAAAC,-,0.00),-72(CTTTTAAAACAC,+,0.00)
mm_162823.1	chr10	81057425	81057625	+	1	NA	NA	NA	2629	NM_024499	52551	Mm.30068	NM_024499	ENSMUSG00000004937	Sgta	5330427H01Rik|AI194281|D10Ertd190e|Sgt|Stg	small glutamine-rich tetratricopeptide repeat (TPR)-containing, alpha	protein-coding	0.025000	0.621891	
mm_82921.1	chr9	35098984	35099184	-	1	NA	NA	NA	-17644	NR_029475	78934	Mm.391688	NR_029475	ENSMUSG00000070315	4930581F22Rik	-	RIKEN cDNA 4930581F22 gene	ncRNA	0.005000	0.522388	
mm_99273.1	chr11	101259066	101259266	+	1	NA	NA	NA	-1401	NM_175638	69847	Mm.23656	NM_175638	ENSMUSG00000035112	Wnk4	2010002J11Rik|Pha2b|Prkwnk4	WNK lysine deficient protein kinase 4	protein-coding	0.010000	0.497512	
mm_40326.1	chr5	43910365	43910565	+	1	NA	NA	NA	41656	NM_007646	12494	Mm.249873	NM_007646	ENSMUSG00000029084	Cd38	ADPRC 1|Cd38-rs1|I-19	CD38 antigen	protein-coding	0.000000	0.402985	
mm_155290.1	chrX	61183639	61183839	+	1	NA	NA	NA	1819	NM_001166658	631990	Mm.401324	NM_001166658	ENSMUSG00000090546	Cdr1	100039759|Cdr|Cdr34|EG631990|Gm2409|Gm7077	cerebellar degeneration related antigen 1	protein-coding	0.005000	0.393035	
mm_150455.1	chr19	38162126	38162326	+	1	NA	NA	NA	29445	NM_001170959	110855	Mm.450141	NM_033614	ENSMUSG00000024992	Pde6c	cpfl1	phosphodiesterase 6C, cGMP specific, cone, alpha prime	protein-coding	0.020000	0.467662	
mm_73372.1	chr8	105617790	105617990	+	1	NA	NA	NA	2424	NR_035492	100316712		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0.020000	0.532338	
mm_77918.1	chr9	7351879	7352079	+	1	NA	NA	NA	4605	NM_008605	17381	Mm.2055	NM_008605	ENSMUSG00000049723	Mmp12	AV378681|MME|Mmel	matrix metallopeptidase 12	protein-coding	0.000000	0.338308	
mm_63348.1	chr7	126976188	126976388	+	1	NA	NA	NA	374	NM_001347656	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.050000	0.572139	
mm_30946.1	chr4	33077303	33077503	+	1	NA	NA	NA	14291	NM_008076	14409	Mm.6227	NM_008076	ENSMUSG00000023267	Gabrr2	-	gamma-aminobutyric acid (GABA) C receptor, subunit rho 2	protein-coding	0.020000	0.557214	
mm_109927.1	chr12	8674550	8674750	-	1	NA	NA	NA	-31	NM_030723	80913	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.145000	0.796020	
mm_82568.1	chr9	21078394	21078594	-	1	NA	NA	NA	-2906	NR_106050	102465656		NR_106050	ENSMUSG00000098907	Mir7082	Gm27933|mmu-mir-7082	microRNA 7082	ncRNA	0.000000	0.427861	
mm_86282.1	chr9	121846920	121847120	-	1	NA	NA	NA	-7559	NM_028384	100502861	Mm.335550	NM_028384	ENSMUSG00000079235	Ccdc13	2900041A11Rik|Gm188	coiled-coil domain containing 13	protein-coding	0.020000	0.427861	
mm_34025.1	chr4	138045708	138045908	+	1	NA	NA	NA	52352	NM_172703	230861	Mm.268903	NM_172703	ENSMUSG00000028760	Eif4g3	1500002J22Rik|4930523M17Rik|G1-419-52|eIF4GII|repro8	eukaryotic translation initiation factor 4 gamma, 3	protein-coding	0.000000	0.283582	
mm_43642.1	chr5	138255761	138255961	+	1	NA	NA	NA	379	NM_001081108	66096	Mm.206901	NM_001081108	ENSMUSG00000050552	Lamtor4	0910001L09Rik|AV006840	late endosomal/lysosomal adaptor, MAPK and MTOR activator 4	protein-coding	0.065000	0.601990	
mm_48624.1	chr5	145128032	145128232	-	1	NA	NA	NA	11957	NM_001033313	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.020000	0.378109	
mm_110120.1	chr12	26443926	26444126	-	1	NA	NA	NA	12426	NM_021384	58185	Mm.24045	NM_021384	ENSMUSG00000020641	Rsad2	2510004L01Rik|Vig1|cig5	radical S-adenosyl methionine domain containing 2	protein-coding	0.000000	0.333333	
mm_114155.1	chr13	55402818	55403018	+	1	NA	NA	NA	3270	NM_011392	20505	Mm.276355	NM_011392	ENSMUSG00000021490	Slc34a1	NaPi-IIa|Npt2|Npt2a|Slc17a2	solute carrier family 34 (sodium phosphate), member 1	protein-coding	0.025000	0.611940	
mm_132642.1	chr16	40119875	40120075	+	1	NA	NA	NA	1217630	NM_170599	207683	Mm.245564	NM_170599	ENSMUSG00000022790	Igsf11	1700025L02Rik|BT-IgSF|Igsf13	immunoglobulin superfamily, member 11	protein-coding	0.000000	0.278607	4(TGATATAAAAAG,-,0.00)
mm_82308.1	chr9	7872682	7872882	-	1	NA	NA	NA	388	NM_007464	11796	Mm.2026	NM_007464	ENSMUSG00000032000	Birc3	AW107670|Api1|Api2|Birc2|C-IAP2|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF49|cIAP-1|cIAP-2|cIAP1|cIAP2	baculoviral IAP repeat-containing 3	protein-coding	0.080000	0.631841	
mm_40447.1	chr5	53591841	53592041	+	1	NA	NA	NA	1455	NM_001080927	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.010000	0.427861	
mm_146300.1	chr18	80206794	80206994	+	1	NA	NA	NA	27	NM_001042408	27366	Mm.172411	NM_025299	ENSMUSG00000057130	Txnl4a	D18Wsu98e|Dim1|ENSMUSG00000057130|Txnl4|U5-15kD|U5-15kDa	thioredoxin-like 4A	protein-coding	0.115000	0.701493	
mm_92852.1	chr10	81524209	81524409	-	1	NA	NA	NA	-84	NM_010304	14676	Mm.1546	NM_010304	ENSMUSG00000034792	Gna15	G[a]15|Galpha15	guanine nucleotide binding protein, alpha 15	protein-coding	0.010000	0.616915	
mm_11740.1	chr2	38003384	38003584	+	1	NA	NA	NA	227235	NM_001163566	241324	Mm.392369	NM_001163566	ENSMUSG00000035403	Crb2	5930402A21|BC043114	crumbs family member 2	protein-coding	0.020000	0.547264	
mm_3183.1	chr1	135766139	135766339	+	1	NA	NA	NA	154	NM_013750	27280	Mm.34346	NM_013750	ENSMUSG00000041801	Phlda3	Tih1	pleckstrin homology like domain, family A, member 3	protein-coding	0.145000	0.761194	
mm_112721.1	chr13	19192094	19192294	+	1	NA	NA	NA	203619	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.492537	
mm_67536.1	chr7	81372339	81372539	-	1	NA	NA	NA	-27205	NM_009092	20068	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.035000	0.552239	
mm_13934.1	chr2	121016311	121016511	+	1	NA	NA	NA	8003	NM_010761	17151	Mm.7838	NM_010761	ENSMUSG00000023572	Ccndbp1	AU022347|DIP1|GCIP|Maid|SECC-8|SSEC-8	cyclin D-type binding-protein 1	protein-coding	0.030000	0.452736	
mm_74985.1	chr8	27142220	27142420	-	1	NA	NA	NA	-590	NR_045840	71082	Mm.395259	NR_045840		4933416M07Rik	-	RIKEN cDNA 4933416M07 gene	ncRNA	0.005000	0.527363	
mm_88224.1	chr10	70378603	70378803	+	1	NA	NA	NA	-61965	NM_001143777	71721	Mm.477813	NM_024244	ENSMUSG00000043259	Fam13c	1200015N20Rik|C030038O19Rik|mKIAA1796	family with sequence similarity 13, member C	protein-coding	0.000000	0.477612	
mm_48511.1	chr5	142821715	142821915	-	1	NA	NA	NA	-4428	NM_001122730	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.045000	0.631841	
mm_29078.1	chr3	103968200	103968400	-	1	NA	NA	NA	16	NR_030676	100125931	Mm.400392	NR_030676	ENSMUSG00000089998	Phtf1os	A130049A11Rik	putative homeodomain transcription factor 1, opposite strand	ncRNA	0.135000	0.696517	
mm_142879.1	chr17	51826443	51826643	-	1	NA	NA	NA	45	NM_001163631	20230	Mm.311655	NM_009122	ENSMUSG00000023927	Satb1	2610306G12Rik|AW413156	special AT-rich sequence binding protein 1	protein-coding	0.015000	0.532338	
mm_167164.1	chr7	135716302	135716502	-	1	NA	NA	NA	-23	NM_001081117	17345	Mm.4078	NM_001081117	ENSMUSG00000031004	Mki67	D630048A14Rik|Ki-67|Ki67	antigen identified by monoclonal antibody Ki 67	protein-coding	0.155000	0.751244	
mm_115262.1	chr13	110541964	110542164	+	1	NA	NA	NA	147020	NM_152804	20620	Mm.380	NM_152804	ENSMUSG00000021701	Plk2	Snk	polo-like kinase 2	protein-coding	0.000000	0.432836	
mm_115592.1	chr13	11827046	11827246	-	1	NA	NA	NA	279799	NM_023868	20191	Mm.239871	NM_023868	ENSMUSG00000021313	Ryr2	9330127I20Rik|RYR-2	ryanodine receptor 2, cardiac	protein-coding	0.000000	0.328358	-28(CCTTTTAGATAC,+,0.00)
mm_75472.1	chr8	48070635	48070835	-	1	NA	NA	NA	-28357	NM_001161516	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	0.030000	0.477612	-93(GGGTATATAAAC,-,0.00)
mm_150578.1	chr19	40638753	40638953	+	1	NA	NA	NA	-20917	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.010000	0.497512	
mm_9168.1	chr1	170975931	170976131	-	1	NA	NA	NA	40	NM_001077189	14130	Mm.425062	NM_010187	ENSMUSG00000026656	Fcgr2b	AI528646|CD32|F630109E10Rik|Fc[g]RII|FcgRII|Fcgr2|Fcgr2a|Fcr-2|Fcr-3|Ly-17|Ly-m20|LyM-1|Lym-1|fcRII	Fc receptor, IgG, low affinity IIb	protein-coding	0.025000	0.522388	
mm_151638.1	chr19	4012596	4012796	-	1	NA	NA	NA	59	NM_133666	17995	Mm.29842	NM_133666	ENSMUSG00000037916	Ndufv1	CI-51kD	NADH dehydrogenase (ubiquinone) flavoprotein 1	protein-coding	0.105000	0.661692	
mm_11275.1	chr2	30061857	30062057	+	1	NA	NA	NA	-39	NM_023871	56086	Mm.326055	NM_023871	ENSMUSG00000054766	Set	2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|StF-IT-1|TAF-I	SET nuclear oncogene	protein-coding	0.085000	0.671642	
mm_160691.1	chr10	24049290	24049490	+	1	NA	NA	NA	-120	NM_001010839	435207	Mm.377966	NM_001010839	ENSMUSG00000100950	Taar7f	taR-7f	trace amine-associated receptor 7F	protein-coding	0.000000	0.293532	
mm_21223.1	chr2	155826579	155826779	-	1	NA	NA	NA	246	NM_010579	16418	Mm.271674	NM_010579	ENSMUSG00000027613	Eif6	1110004P11|AA408895|CAB|Itgb4bp|eIF-6|imc-415|p27(BBP)|p27BBP	eukaryotic translation initiation factor 6	protein-coding	0.075000	0.631841	
mm_13419.1	chr2	104413867	104414067	+	1	NA	NA	NA	-3633	NM_001033347	241589	Mm.358909	NM_001033347	ENSMUSG00000068373	D430041D05Rik	9630056G07Rik|G2	RIKEN cDNA D430041D05 gene	protein-coding	0.010000	0.442786	
mm_69988.1	chr7	142380889	142381089	-	1	NA	NA	NA	6881	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.005000	0.467662	
mm_3569.1	chr1	150448748	150448948	+	1	NA	NA	NA	17317	NM_021400	96875	Mm.174256	NM_021400	ENSMUSG00000006014	Prg4	CACP|DOL54|JCAP|MSF|SZP|lubricin	proteoglycan 4 (megakaryocyte stimulating factor, articular superficial zone protein)	protein-coding	0.005000	0.417910	
mm_135141.1	chr16	35854475	35854675	-	1	NA	NA	NA	16807	NM_001039530	547253	Mm.244406	NM_001039530	ENSMUSG00000034422	Parp14	1600029O10Rik|ARTD8|BC021340|CoaSt6|mKIAA1268	poly (ADP-ribose) polymerase family, member 14	protein-coding	0.005000	0.388060	-82(CCTTTAATACAA,+,0.00)
mm_41355.1	chr5	90504901	90505101	+	1	NA	NA	NA	-13948	NM_145146	280662	Mm.348786	NM_145146	ENSMUSG00000029369	Afm	Alf|alpha-Alb	afamin	protein-coding	0.040000	0.542289	
mm_33498.1	chr4	130823777	130823977	+	1	NA	NA	NA	31340	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.010000	0.567164	
mm_69235.1	chr7	127708665	127708865	-	1	NA	NA	NA	1	NM_009746	12055	Mm.89667	NM_009746	ENSMUSG00000030814	Bcl7c	C230096E12Rik	B cell CLL/lymphoma 7C	protein-coding	0.140000	0.825871	
mm_153602.1	chr19	43890461	43890661	-	1	NA	NA	NA	-10793	NM_001306088	71972	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.020000	0.522388	
mm_85625.1	chr9	107614996	107615196	-	1	NA	NA	NA	-5855	NM_001291539	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.005000	0.562189	
mm_159473.1	chr4	21847478	21847678	+	1	NA	NA	NA	-5	NM_025669	66625	Mm.100117	NM_025669	ENSMUSG00000028248	Pnisr	5730406M06Rik|AA673174|Pinsr|Sfrs18|Srsf18	PNN interacting serine/arginine-rich	protein-coding	0.020000	0.517413	-62(CCTTAAAGAGTA,+,0.00)
mm_81754.1	chr9	113956585	113956785	+	1	NA	NA	NA	25751	NM_013699	22221	Mm.28052	NM_013699	ENSMUSG00000009741	Ubp1	Cp2b|LBP-1a|LBP-1b|NF2d9	upstream binding protein 1	protein-coding	0.005000	0.373134	
mm_69482.1	chr7	133776692	133776892	-	1	NA	NA	NA	11	NM_001286032	101437	Mm.199223	NM_133941	ENSMUSG00000030986	Dhx32	3110079L04Rik|4732469F02Rik|AA408140|Ddx32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	protein-coding	0.150000	0.751244	
mm_33373.1	chr4	129515402	129515602	+	1	NA	NA	NA	1921	NM_010807	17357	Mm.424974	NM_010807	ENSMUSG00000047945	Marcksl1	AL022768|AW215397|AW536807|D4Bc1|F52|MacMARCKS|Macs2|Macs3|Mlp|Mrp	MARCKS-like 1	protein-coding	0.015000	0.487562	
mm_9385.1	chr1	172213071	172213271	-	1	NA	NA	NA	-6367	NM_011063	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.005000	0.507463	
mm_150237.1	chr19	34067254	34067454	+	1	NA	NA	NA	-4	NM_027340	70166	Mm.75602	NM_027340	ENSMUSG00000024770	Lipn	2210418G03Rik|Lipl4	lipase, family member N	protein-coding	0.025000	0.502488	
mm_13542.1	chr2	110731456	110731656	+	1	NA	NA	NA	10062	NM_172979	269328	Mm.32566	NM_172979	ENSMUSG00000050808	Muc15	4732460E09|D730046L02Rik|MUC-15	mucin 15	protein-coding	0.010000	0.457711	
mm_144914.1	chr18	37477720	37477920	+	1	NA	NA	NA	52	NM_053141	93887	Mm.197441	NM_053141	ENSMUSG00000047910	Pcdhb16	Pcdhb8|PcdhbP	protocadherin beta 16	protein-coding	0.025000	0.477612	-39(CCATTAATAGGG,+,0.00)
mm_16076.1	chr2	168231106	168231306	+	1	NA	NA	NA	584	NM_001160330	69372	Mm.482182	NM_001160330	ENSMUSG00000074576	Mocs3	1700020H17Rik|Uba4	molybdenum cofactor synthesis 3	protein-coding	0.170000	0.731343	
mm_168487.1	chr1	149506315	149506515	-	1	NA	NA	NA	416024	NM_001305632	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.030000	0.477612	
mm_25173.1	chr3	103127298	103127498	+	1	NA	NA	NA	-158	NM_177857	329727	Mm.293641	NM_177857	ENSMUSG00000007379	Dennd2c	A930010I20Rik	DENN/MADD domain containing 2C	protein-coding	0.005000	0.487562	
mm_22163.1	chr2	172940489	172940689	-	1	NA	NA	NA	-268	NM_007557	12162	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	0.110000	0.766169	
mm_26027.1	chr3	135439038	135439238	+	1	NA	NA	NA	379	NM_025356	66105	Mm.49884	NM_025356	ENSMUSG00000078578	Ube2d3	1100001F19Rik|9430029A22Rik|AA414951	ubiquitin-conjugating enzyme E2D 3	protein-coding	0.160000	0.776119	
mm_57772.1	chr6	129237076	129237276	-	1	NA	NA	NA	869	NR_040265	76432	Mm.261738	NR_040265	ENSMUSG00000097354	2310001H17Rik	AI646108	RIKEN cDNA 2310001H17 gene	ncRNA	0.005000	0.472637	
mm_78682.1	chr9	40784989	40785189	+	1	NA	NA	NA	-16184	NM_031165	15481	Mm.290774	NM_031165	ENSMUSG00000015656	Hspa8	2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10	heat shock protein 8	protein-coding	0.015000	0.407960	
mm_69218.1	chr7	127588031	127588231	-	1	NA	NA	NA	464	NM_001033040	233899	Mm.25220	NM_001033040	ENSMUSG00000057176	Ccdc189	Gm166	coiled-coil domain containing 189	protein-coding	0.030000	0.592040	
mm_24478.1	chr3	90725798	90725998	+	1	NA	NA	NA	-1008	NM_001165968	384997	Mm.316644	NM_207263	ENSMUSG00000042250	Pglyrp4	Gm1478|Gm413	peptidoglycan recognition protein 4	protein-coding	0.015000	0.507463	
mm_95643.1	chr11	53720693	53720893	+	1	NA	NA	NA	-1	NM_010558	16191	Mm.4461	NM_010558	ENSMUSG00000036117	Il5	Il-5	interleukin 5	protein-coding	0.020000	0.477612	
mm_143455.1	chr17	70986970	70987170	-	1	NA	NA	NA	3446	NM_023402	67938	Mm.261329	NM_023402	ENSMUSG00000034868	Myl12b	1500001M02Rik|C77744|Mylc2b|RLC-B	myosin, light chain 12B, regulatory	protein-coding	0.030000	0.457711	
mm_102847.1	chr11	69369296	69369496	-	1	NA	NA	NA	30	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.040000	0.686567	
mm_75449.1	chr8	47675048	47675248	-	1	NA	NA	NA	11	NM_023503	69260	Mm.430733	NM_023503	ENSMUSG00000063049	Ing2	2810011M06Rik|Ing1l|Ing2b|P33ING2	inhibitor of growth family, member 2	protein-coding	0.085000	0.671642	
mm_78082.1	chr9	15730848	15731048	+	1	NA	NA	NA	21179	NM_172289	234967	Mm.138815	NM_172289	ENSMUSG00000043885	Slc36a4	6330573I15Rik|PAT4	solute carrier family 36 (proton/amino acid symporter), member 4	protein-coding	0.005000	0.477612	
mm_116877.1	chr13	55021390	55021590	-	1	NA	NA	NA	-105	NM_001033245	212032	Mm.267479	NM_001033245	ENSMUSG00000025877	Hk3	HK III|HK-III	hexokinase 3	protein-coding	0.030000	0.442786	
mm_58544.1	chr7	4526456	4526656	+	1	NA	NA	NA	-4113	NM_009406	21954	Mm.27674	NM_009406	ENSMUSG00000035458	Tnni3	Tn1|cTnI	troponin I, cardiac 3	protein-coding	0.050000	0.572139	
mm_123457.1	chr14	65425360	65425560	-	1	NA	NA	NA	12	NM_001205075	18155	Mm.16347	NM_010932	ENSMUSG00000045731	Pnoc	N/OFQ|Npnc1|OFQ/N	prepronociceptin	protein-coding	0.015000	0.557214	
mm_22790.1	chr3	22154575	22154775	+	1	NA	NA	NA	78023	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.010000	0.512438	
mm_107718.1	chr12	56253156	56253356	+	1	NA	NA	NA	13	NR_045048	100503961	Mm.136732	NR_045048		Gm19990	-	predicted gene, 19990	ncRNA	0.010000	0.462687	
mm_73741.1	chr8	114151586	114151786	+	1	NA	NA	NA	18112	NM_024437	67528	Mm.27889	NM_024437	ENSMUSG00000031767	Nudt7	1300007B24Rik|2210404C19Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 7	protein-coding	0.015000	0.437811	
mm_53794.1	chr6	146724878	146725078	+	1	NA	NA	NA	48	NM_172734	232533	Mm.322121	NM_172734	ENSMUSG00000001630	Stk38l	4930473A22Rik|Ndr2|Ndr54	serine/threonine kinase 38 like	protein-coding	0.150000	0.706468	-96(CCCTTTAAAAAA,-,0.00)
mm_18100.1	chr2	44987902	44988102	-	1	NA	NA	NA	35175	NR_039591	100628598		NR_039591	ENSMUSG00000092679	Mir5129	mir-5129|mmu-mir-5129|mu-mir-5129	microRNA 5129	ncRNA	0.010000	0.348259	
mm_56802.1	chr6	116657066	116657266	-	1	NA	NA	NA	6482	NM_001166580	213393	Mm.38231	NM_145980	ENSMUSG00000048489	8430408G22Rik	Depp|Fseg	RIKEN cDNA 8430408G22 gene	protein-coding	0.000000	0.412935	
mm_153082.1	chr19	32387912	32388112	-	1	NA	NA	NA	442	NM_144792	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.165000	0.800995	
mm_48789.1	chr5	148652566	148652766	-	1	NA	NA	NA	-89174	NR_028285	70138	Mm.417834	NR_028285	ENSMUSG00000086494	2210417A02Rik	AV081004	RIKEN cDNA 2210417A02 gene	ncRNA	0.015000	0.527363	-90(GCCTCTTTAAGA,-,0.00),25(CTCCTTAAAAAC,-,0.00),27(CCTTAAAAACGC,+,0.00)
mm_63158.1	chr7	123422272	123422472	+	1	NA	NA	NA	-39922	NM_007474	11833	Mm.273175	NM_007474	ENSMUSG00000030762	Aqp8	AI255744|AQP-8	aquaporin 8	protein-coding	0.015000	0.432836	
mm_124569.1	chr14	124192445	124192645	-	1	NA	NA	NA	1	NM_010201	14169	Mm.206362	NM_010201	ENSMUSG00000025551	Fgf14	FHF-4|Fhf4|mFHF-4(1B)	fibroblast growth factor 14	protein-coding	0.070000	0.691542	
mm_50247.1	chr6	42357229	42357429	+	1	NA	NA	NA	7501	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.040000	0.532338	-24(CCTTTTAGGCAA,+,0.00)
mm_147487.1	chr18	47321516	47321716	-	1	NA	NA	NA	47252	NM_018744	20358	Mm.40909	NM_018744	ENSMUSG00000019647	Sema6a	A730020P05Rik|AI851735|Sema6A-1|Semaq|VIa	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A	protein-coding	0.025000	0.383085	
mm_90619.1	chr10	128411644	128411844	+	1	NA	NA	NA	128	NM_026259	67588	Mm.294120	NM_026259	ENSMUSG00000025373	Rnf41	2210404G21Rik|4930511A05Rik|4933415P08Rik|D10Ertd722e|FLRF|Nrdp1	ring finger protein 41	protein-coding	0.085000	0.661692	
mm_1176.1	chr1	61075538	61075738	+	1	NA	NA	NA	97724	NM_017480	54167	Mm.42044	NM_017480	ENSMUSG00000026009	Icos	AILIM|CCLP|CRP-1|H4|Ly115	inducible T cell co-stimulator	protein-coding	0.005000	0.442786	
mm_81759.1	chr9	113976201	113976401	+	1	NA	NA	NA	17499	NR_039590	100628597		NR_039590	ENSMUSG00000092958	Mir5128	mir-5128|mmu-mir-5128|mu-mir-5128	microRNA 5128	ncRNA	0.010000	0.378109	-26(TGATATTAAAGG,-,0.00)
mm_100357.1	chr11	118449743	118449943	+	1	NA	NA	NA	5152	NR_045902	100126224	Mm.441989	NR_045902	ENSMUSG00000086514	Gm11747	OTTMUSG00000003972	predicted gene 11747	ncRNA	0.010000	0.537313	
mm_39829.1	chr5	30814649	30814849	+	1	NA	NA	NA	108	NM_133350	100732	Mm.332295	NM_133350	ENSMUSG00000029166	Mapre3	AI790651|EB2|EB3|EBF3|RP3	microtubule-associated protein, RP/EB family, member 3	protein-coding	0.130000	0.771144	9(GTGCTTTTAAGC,-,0.00),11(GCTTTTAAGCCG,+,0.00)
mm_129536.1	chr15	79328131	79328331	-	1	NA	NA	NA	140	NM_016915	53357	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0.085000	0.666667	
mm_151548.1	chr19	59458027	59458227	+	1	NA	NA	NA	508	NR_002863	329078	Mm.80382	NR_002863	ENSMUSG00000087095	Emx2os	-	Emx2 opposite strand/antisense transcript (non-protein coding)	ncRNA	0.085000	0.656716	
mm_101222.1	chr11	20200707	20200907	-	1	NA	NA	NA	-795	NM_008996	19324	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0.020000	0.447761	
mm_57492.1	chr6	125308675	125308875	-	1	NA	NA	NA	5095	NM_010736	17000	Mm.3122	NM_010736	ENSMUSG00000030339	Ltbr	AI256028|CD18|LTbetaR|Ltar|TNF-R-III|TNFCR|TNFR-RP|TNFR2-RP|TNFRrp|Tnfbr|Tnfrsf3	lymphotoxin B receptor	protein-coding	0.005000	0.467662	
mm_8890.1	chr1	162898223	162898423	-	1	NA	NA	NA	389	NM_018881	55990	Mm.10929	NM_018881	ENSMUSG00000040170	Fmo2	2310008D08Rik|2310042I22Rik|AW107733	flavin containing monooxygenase 2	protein-coding	0.015000	0.507463	
mm_59111.1	chr7	19816522	19816722	+	1	NA	NA	NA	6133	NM_033601	12051	Mm.439658	NM_033601	ENSMUSG00000053175	Bcl3	AI528691|Bcl-3	B cell leukemia/lymphoma 3	protein-coding	0.020000	0.626866	
mm_146315.1	chr18	80470026	80470226	+	1	NA	NA	NA	-459	NM_026295	67655	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.095000	0.582090	
mm_64907.1	chr7	16047968	16048168	-	1	NA	NA	NA	-23777	NM_001347559	666528	Mm.290718	NM_001099277	ENSMUSG00000078796	Zfp541	EG666528|Znf541	zinc finger protein 541	protein-coding	0.130000	0.646766	
mm_106051.1	chr11	116080569	116080769	-	1	NA	NA	NA	-2708	NM_001009573	70450	Mm.259460	NM_001009573	ENSMUSG00000057948	Unc13d	2610108D09Rik|Jinx|Munc13-4|mFLJ00067	unc-13 homolog D (C. elegans)	protein-coding	0.015000	0.592040	
mm_16875.1	chr2	12419293	12419493	-	1	NA	NA	NA	67	NM_024185	66960	Mm.34059	NM_024185	ENSMUSG00000026767	Fam188a	1810041E18Rik|2310047O13Rik|5830410F13Rik|AI447827|AW111958	family with sequence similarity 188, member A	protein-coding	0.105000	0.681592	
mm_114235.1	chr13	56609414	56609614	+	1	NA	NA	NA	-89	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.085000	0.696517	
mm_95135.1	chr11	34827111	34827311	+	1	NA	NA	NA	6430	NM_027411	70385	Mm.194368	NM_027411	ENSMUSG00000069910	Spdl1	1700018I02Rik|2600001J17Rik|2810049B11Rik|AA409762|Ccdc99	spindle apparatus coiled-coil protein 1	protein-coding	0.005000	0.333333	
mm_16673.1	chr2	6783679	6783879	-	1	NA	NA	NA	-62117	NM_001310447	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.010000	0.412935	
mm_58679.1	chr7	12479057	12479257	+	1	NA	NA	NA	852	NM_026112	67370	Mm.98929	NM_026112	ENSMUSG00000030386	Zfp606	2410022M24Rik|AW494727	zinc finger protein 606	protein-coding	0.035000	0.467662	
mm_59926.1	chr7	30423210	30423410	+	1	NA	NA	NA	6	NM_172142	243910	Mm.386878	NM_172142	ENSMUSG00000036931	Nfkbid	IkappaBNS	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, delta	protein-coding	0.045000	0.572139	
mm_112202.1	chr12	113426689	113426889	-	1	NA	NA	NA	-62776	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.567164	
mm_61313.1	chr7	68081042	68081242	+	1	NA	NA	NA	128885	NM_010513	16001	Mm.275742	NM_010513	ENSMUSG00000005533	Igf1r	A330103N21Rik|CD221|D930020L01|IGF-1R|hyft	insulin-like growth factor I receptor	protein-coding	0.015000	0.298507	-3(TTGTCTTAAAGG,-,0.00)
mm_78971.1	chr9	45328401	45328601	+	1	NA	NA	NA	-6422	NR_040720	72229	Mm.234192	NR_040720	ENSMUSG00000085831	1700003G13Rik	-	RIKEN cDNA 1700003G13 gene	ncRNA	0.010000	0.601990	
mm_28640.1	chr3	95219809	95220009	-	1	NA	NA	NA	-1967	NM_029885	213054	Mm.224820	NM_029885	ENSMUSG00000038766	Gabpb2	1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1	GA repeat binding protein, beta 2	protein-coding	0.015000	0.398010	
mm_541.1	chr1	38017755	38017955	+	1	NA	NA	NA	19845	NM_198303	226982	Mm.260943	NM_198303	ENSMUSG00000026083	Eif5b	A030003E17Rik|BC018347|IF2	eukaryotic translation initiation factor 5B	protein-coding	0.005000	0.383085	81(GTTTTTAAAAGC,+,0.00),81(GTTTTTAAAAGC,-,0.00)
mm_67102.1	chr7	69909496	69909696	-	1	NA	NA	NA	413502	NR_045940	73796	Mm.410832	NR_045940	ENSMUSG00000108885	4930402F11Rik	-	RIKEN cDNA 4930402F11 gene	ncRNA	0.005000	0.502488	
mm_51958.1	chr6	91756889	91757089	+	1	NA	NA	NA	50404	NM_001159507	243547	Mm.333264	NM_001033353	ENSMUSG00000030098	Grip2	-	glutamate receptor interacting protein 2	protein-coding	0.035000	0.572139	
mm_73330.1	chr8	105297603	105297803	+	1	NA	NA	NA	40	NM_148952	104394	Mm.34554	NM_148952	ENSMUSG00000014859	E2f4	2010111M04Rik|AI427446	E2F transcription factor 4	protein-coding	0.135000	0.746269	
mm_9730.1	chr1	180199497	180199697	-	1	NA	NA	NA	-3577	NM_023341	67426	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0.005000	0.462687	
mm_73752.1	chr8	114772857	114773057	+	1	NA	NA	NA	333305	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.025000	0.393035	
mm_89465.1	chr10	93453290	93453490	+	1	NA	NA	NA	-6	NM_001313897	16993	Mm.271071	NM_008517	ENSMUSG00000015889	Lta4h	-	leukotriene A4 hydrolase	protein-coding	0.070000	0.626866	
mm_153507.1	chr19	41363747	41363947	-	1	NA	NA	NA	21223	NM_031376	83490	Mm.222266	NM_031376	ENSMUSG00000025017	Pik3ap1	1810044J04Rik|BCAP	phosphoinositide-3-kinase adaptor protein 1	protein-coding	0.000000	0.378109	
mm_42540.1	chr5	115945225	115945425	+	1	NA	NA	NA	79103	NM_031869	19079	Mm.458152	NM_031869	ENSMUSG00000029513	Prkab1	1300015D22Rik|AU021155|E430008F22	protein kinase, AMP-activated, beta 1 non-catalytic subunit	protein-coding	0.015000	0.557214	
mm_143661.1	chr17	79714886	79715086	-	1	NA	NA	NA	55	NM_009994	13078	Mm.214016	NM_009994	ENSMUSG00000024087	Cyp1b1	CP1B|P4501b1	cytochrome P450, family 1, subfamily b, polypeptide 1	protein-coding	0.050000	0.572139	
mm_110506.1	chr12	54695180	54695380	-	1	NA	NA	NA	614	NM_001331162	66266	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	0.010000	0.333333	
mm_43875.1	chr5	143651134	143651334	+	1	NA	NA	NA	-7	NM_001163548	19159	Mm.281003	NM_011182	ENSMUSG00000018001	Cyth3	AI648983|ARNO3|CLM3|Grp1|Pscd3	cytohesin 3	protein-coding	0.010000	0.532338	
mm_51922.1	chr6	91265834	91266034	+	1	NA	NA	NA	53170	NM_007992	14115	Mm.249146	NM_007992	ENSMUSG00000064080	Fbln2	5730577E14Rik|FIBL-2	fibulin 2	protein-coding	0.025000	0.587065	
mm_169388.1	chr14	42478531	42478731	+	1	NA	NA	NA	-218583	NR_105055	101056136	Mm.489000	NR_105055	ENSMUSG00000092152	Gm17026	-	predicted gene 17026	ncRNA	0.000000	0.447761	
mm_74314.1	chr8	126596119	126596319	+	1	NA	NA	NA	-2783	NM_001164598	270110	Mm.334918	NM_001164598	ENSMUSG00000051495	Irf2bp2	E130305N23Rik|IRF-2BP2	interferon regulatory factor 2 binding protein 2	protein-coding	0.025000	0.452736	
mm_108270.1	chr12	78802800	78803000	+	1	NA	NA	NA	53953	NM_019579	56217	Mm.425777	NM_019579	ENSMUSG00000021112	Mpp5	3830420B02Rik|AI255216|AI644496|Pals1	membrane protein, palmitoylated 5 (MAGUK p55 subfamily member 5)	protein-coding	0.010000	0.378109	
mm_48193.1	chr5	137529784	137529984	-	1	NA	NA	NA	-290	NR_105846	102465227		NR_105846	ENSMUSG00000098597	Mir6418	Gm27629|mir-6418|mmu-mir-6418	microRNA 6418	ncRNA	0.020000	0.606965	
mm_67498.1	chr7	80769476	80769676	-	1	NA	NA	NA	33755	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.000000	0.497512	
mm_20858.1	chr2	148435985	148436185	-	1	NA	NA	NA	7450	NM_010740	17064	Mm.681	NM_010740	ENSMUSG00000027435	Cd93	6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68	CD93 antigen	protein-coding	0.015000	0.358209	
mm_171590.1	chr4	147642410	147642610	-	1	NA	NA	NA	-2	NM_145078	112422	Mm.327194	NM_145078	ENSMUSG00000066000	Zfp979	2610305D13Rik|Ssm1b	zinc finger protein 979	protein-coding	0.030000	0.522388	
mm_145331.1	chr18	56360757	56360957	+	1	NA	NA	NA	-71275	NM_026240	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|NS3TP2	GRAM domain containing 3	protein-coding	0.005000	0.517413	
mm_15054.1	chr2	152911239	152911439	+	1	NA	NA	NA	-13	NM_001081044	228785	Mm.250604	NM_001081044	ENSMUSG00000027470	Mylk2	9830004H17Rik|BB138278	myosin, light polypeptide kinase 2, skeletal muscle	protein-coding	0.030000	0.621891	
mm_173316.1	chrY	90736116	90736316	+	1	NA	NA	NA	18834	NR_137283	654820	Mm.34441	NM_001039559	ENSMUSG00000072844	G530011O06Rik	-	RIKEN cDNA G530011O06 gene	ncRNA	0.015000	0.482587	
mm_23772.1	chr3	75557500	75557700	+	1	NA	NA	NA	67	NM_009250	20713	Mm.41560	NM_009250	ENSMUSG00000027834	Serpini1	AI837402|Ns|PI-12|PI12|Spi17	serine (or cysteine) peptidase inhibitor, clade I, member 1	protein-coding	0.035000	0.597015	
mm_82124.1	chr9	123509093	123509293	+	1	NA	NA	NA	-20689	NM_030692	83493	Mm.273671	NM_030692	ENSMUSG00000025240	Sacm1l	SAC1|Sac1p|mKIAA0851	SAC1 suppressor of actin mutations 1-like (yeast)	protein-coding	0.005000	0.482587	
mm_160574.1	chr9	58202602	58202802	-	1	NA	NA	NA	-168	NM_001161538	320563	Mm.186499	NM_177193	ENSMUSG00000051243	Islr2	B930052A04Rik|Linx|Mbu-3|mKIAA1465	immunoglobulin superfamily containing leucine-rich repeat 2	protein-coding	0.020000	0.552239	
mm_98390.1	chr11	94213883	94214083	+	1	NA	NA	NA	2529	NM_009427	22057	Mm.259673	NM_009427	ENSMUSG00000037573	Tob1	Tob|Trob	transducer of ErbB-2.1	protein-coding	0.055000	0.547264	
mm_149053.1	chr19	8838675	8838875	+	1	NA	NA	NA	471	NM_010316	14704	Mm.329700	NM_010316	ENSMUSG00000071658	Gng3	-	guanine nucleotide binding protein (G protein), gamma 3	protein-coding	0.005000	0.383085	
mm_64898.1	chr7	15959459	15959659	-	1	NA	NA	NA	7976	NM_153068	259300	Mm.138215	NM_153068	ENSMUSG00000074364	Ehd2	BC027084|C130052H20Rik	EH-domain containing 2	protein-coding	0.000000	0.402985	
mm_53072.1	chr6	124931339	124931539	+	1	NA	NA	NA	51	NM_001170341	30853	Mm.29737	NM_145385	ENSMUSG00000030120	Mlf2	AI256856|AU018944|C77284	myeloid leukemia factor 2	protein-coding	0.140000	0.751244	
mm_9361.1	chr1	172198238	172198438	-	1	NA	NA	NA	8466	NM_001329871	18611	Mm.544	NM_011063	ENSMUSG00000013698	Pea15a	Mat1|PEA-15|Pea15|Pkcs15	phosphoprotein enriched in astrocytes 15A	protein-coding	0.005000	0.512438	
mm_105901.1	chr11	114982888	114983088	-	1	NA	NA	NA	6898	NM_145437	217305	Mm.275986	NM_145437	ENSMUSG00000034641	Cd300ld	4732429D16Rik|CLM5|Cd300ld1|LMIR4|MAIR-IV|clm-5	CD300 molecule like family member d	protein-coding	0.000000	0.457711	
mm_133961.1	chr16	4091789	4091989	-	1	NA	NA	NA	-14079	NM_026508	68015	Mm.123366	NM_026508	ENSMUSG00000005981	Trap1	2410002K23Rik|HSP75	TNF receptor-associated protein 1	protein-coding	0.020000	0.467662	
mm_94462.1	chr11	6446085	6446285	+	1	NA	NA	NA	-1742	NM_001347064	77605	Mm.27624	NM_029938	ENSMUSG00000041126	H2afv	C530002L11Rik|H2a.z-2|H2av	H2A histone family, member V	protein-coding	0.025000	0.492537	-69(CCTTTAAGAGTA,+,0.00)
mm_172942.1	chr9	80305704	80305904	+	1	NA	NA	NA	140770	NM_001039546	17920	Mm.4040	NM_008662	ENSMUSG00000033577	Myo6	BC029719|Tlc|sv	myosin VI	protein-coding	0.010000	0.407960	
mm_161448.1	chr15	74574024	74574224	+	1	NA	NA	NA	57928	NM_174991	107831	Mm.43133	NM_174991	ENSMUSG00000034730	Adgrb1	B830018M07Rik|Bai1|R75078|mKIAA4089	adhesion G protein-coupled receptor B1	protein-coding	0.010000	0.601990	
mm_18208.1	chr2	48912170	48912370	-	1	NA	NA	NA	36997	NM_001177313	26428	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0.000000	0.318408	
mm_151387.1	chr19	56397029	56397229	+	1	NA	NA	NA	0	NM_007611	12369	Mm.35687	NM_007611	ENSMUSG00000025076	Casp7	AI314680|CMH-1|ICE-IAP3|Mch3|caspase-7|mCASP-7	caspase 7	protein-coding	0.145000	0.771144	
mm_140302.1	chr17	85623841	85624041	+	1	NA	NA	NA	3107	NM_011381	20473	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0.060000	0.577114	
mm_134694.1	chr16	22622203	22622403	-	1	NA	NA	NA	34928	NM_138650	110197	Mm.194986	NM_138650	ENSMUSG00000022861	Dgkg	2900055E17Rik|90kDa|AI854428|Dagk3|E430001K23Rik|mKIAA4131	diacylglycerol kinase, gamma	protein-coding	0.035000	0.547264	
mm_38881.1	chr4	149698607	149698807	-	1	NA	NA	NA	1	NM_001164050	18707	Mm.229108	NM_008840	ENSMUSG00000039936	Pik3cd	2410099E07Rik|2610208K16Rik|AW545373|p110delta	phosphatidylinositol 3-kinase catalytic delta polypeptide	protein-coding	0.055000	0.601990	
mm_72634.1	chr8	84676320	84676520	+	1	NA	NA	NA	11442	NM_025788	66830	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	0.020000	0.532338	
mm_56385.1	chr6	94665107	94665307	-	1	NA	NA	NA	34938	NM_008377	16206	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.005000	0.452736	81(GCATATTTAAGG,-,0.00)
mm_106764.1	chr12	4592562	4592762	+	1	NA	NA	NA	-346	NM_001198969	20403	Mm.341204	NM_011365	ENSMUSG00000020640	Itsn2	AI327390|Ese2|Sh3d1B|Sh3p18|mKIAA1256	intersectin 2	protein-coding	0.010000	0.512438	
mm_109.1	chr1	9601218	9601418	+	1	NA	NA	NA	51	NM_178399	76982	Mm.491098	NM_178399	ENSMUSG00000067879	3110035E14Rik	AI415019|AV164974|R75066	RIKEN cDNA 3110035E14 gene	protein-coding	0.025000	0.378109	
mm_150498.1	chr19	39018638	39018838	+	1	NA	NA	NA	11719	NM_028089	72082	Mm.142581	NM_028089	ENSMUSG00000025002	Cyp2c55	2010318C06Rik	cytochrome P450, family 2, subfamily c, polypeptide 55	protein-coding	0.010000	0.393035	
mm_9424.1	chr1	172377891	172378091	-	1	NA	NA	NA	1460	NM_026234	67556	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	0.020000	0.398010	
mm_140556.1	chr17	7871858	7872058	-	1	NA	NA	NA	-54042	NM_145968	72536	Mm.119680	NM_145968	ENSMUSG00000033450	Tagap	2610315E15Rik	T cell activation Rho GTPase activating protein	protein-coding	0.030000	0.557214	
mm_88095.1	chr10	68723762	68723962	+	1	NA	NA	NA	116	NM_177794	327766	Mm.2479	NM_177794	ENSMUSG00000060044	Tmem26	3230401A06|AI195372	transmembrane protein 26	protein-coding	0.050000	0.666667	
mm_126124.1	chr15	78329632	78329832	+	1	NA	NA	NA	3742	NM_007780	12983	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.000000	0.527363	
mm_20771.1	chr2	142901441	142901641	-	1	NA	NA	NA	-77	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.100000	0.746269	
mm_164719.1	chr17	56613400	56613600	+	1	NA	NA	NA	105	NM_018730	54217	Mm.11376	NM_018730	ENSMUSG00000057863	Rpl36	-	ribosomal protein L36	protein-coding	0.105000	0.716418	
mm_21609.1	chr2	164254601	164254801	-	1	NA	NA	NA	1942	NM_173377	329557	Mm.118769	NM_173377	ENSMUSG00000050383	Svs3b	9530004A22Rik	seminal vesicle secretory protein 3B	protein-coding	0.005000	0.487562	
mm_118393.1	chr13	118715563	118715763	-	1	NA	NA	NA	964	NM_008002	14165	Mm.317323	NM_008002	ENSMUSG00000021732	Fgf10	AEY17|BB213776|Fgf-10|Gsfaey17	fibroblast growth factor 10	protein-coding	0.040000	0.527363	
mm_20994.1	chr2	152332193	152332393	-	1	NA	NA	NA	132	NM_001083921	24105	Mm.182145	NM_019705	ENSMUSG00000027466	Rbck1	AL033326|HOIL-1|HOIL-1L|UIP28|Ubce7ip3	RanBP-type and C3HC4-type zinc finger containing 1	protein-coding	0.100000	0.721393	
mm_33473.1	chr4	130818539	130818739	+	1	NA	NA	NA	26102	NM_011520	20970	Mm.206536	NM_011520	ENSMUSG00000025743	Sdc3	Synd3|mKIAA0468|syn-3	syndecan 3	protein-coding	0.035000	0.611940	
mm_36008.1	chr4	56802194	56802394	-	1	NA	NA	NA	-35	NM_001081420	230234	Mm.268148	NM_001081420	ENSMUSG00000038827	Fam206a	simiate	family with sequence similarity 206, member A	protein-coding	0.110000	0.666667	
mm_86357.1	chr9	123710505	123710705	-	1	NA	NA	NA	6952	NM_033322	93730	Mm.378263	NM_033322	ENSMUSG00000025245	Lztfl1	5530402H04Rik|6130400H19Rik|AI414725|AW048545	leucine zipper transcription factor-like 1	protein-coding	0.000000	0.412935	
mm_31984.1	chr4	89137311	89137511	+	1	NA	NA	NA	41	NM_024433	66902	Mm.28500	NM_024433	ENSMUSG00000062937	Mtap	1300019I21Rik|MSAP	methylthioadenosine phosphorylase	protein-coding	0.085000	0.711443	
mm_43717.1	chr5	139406583	139406783	+	1	NA	NA	NA	296	NM_177000	319772	Mm.440271	NM_177000	ENSMUSG00000044092	C130050O18Rik	-	RIKEN cDNA C130050O18 gene	protein-coding	0.010000	0.462687	
mm_101692.1	chr11	40750272	40750472	-	1	NA	NA	NA	4914	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.005000	0.333333	
mm_102397.1	chr11	59002261	59002461	-	1	NA	NA	NA	24268	NM_053168	94091	Mm.248049	NM_053168	ENSMUSG00000020455	Trim11	-	tripartite motif-containing 11	protein-coding	0.015000	0.557214	
mm_150853.1	chr19	45001952	45002152	+	1	NA	NA	NA	4390	NM_053164	94067	Mm.44174	NM_053164	ENSMUSG00000025208	Mrpl43	4930442D21Rik|bMRP36a	mitochondrial ribosomal protein L43	protein-coding	0.010000	0.547264	
mm_50239.1	chr6	42351450	42351650	+	1	NA	NA	NA	1722	NM_001289619	22793	Mm.282303	NM_011777	ENSMUSG00000029860	Zyx	9530098H06Rik|R75157	zyxin	protein-coding	0.010000	0.606965	
mm_150335.1	chr19	34575219	34575419	+	1	NA	NA	NA	-8210	NM_010501	15959	Mm.426079	NM_010501	ENSMUSG00000074896	Ifit3	Ifi49|P49	interferon-induced protein with tetratricopeptide repeats 3	protein-coding	0.000000	0.318408	
mm_17773.1	chr2	32829307	32829507	-	1	NA	NA	NA	17825	NM_009295	20910	Mm.278865	NM_009295	ENSMUSG00000026797	Stxbp1	AI317162|AI326233|MMS10-G|Ms10g|Munc-18a|Munc18-1|N-sec1|Rb-sec1|Sxtbp1|Unc18-1|Unc18h|nsec1	syntaxin binding protein 1	protein-coding	0.025000	0.462687	
mm_122209.1	chr14	32085476	32085676	-	1	NA	NA	NA	116	NR_104303	105638	Mm.2519	NM_172254	ENSMUSG00000021905	Dph3	DELGIP1|DelgipP1|Desr1|KTI11|Zcsl2	diphthamine biosynthesis 3	protein-coding	0.105000	0.641791	
mm_32411.1	chr4	107002620	107002820	+	1	NA	NA	NA	64146	NM_025500	56280	Mm.29517	NM_025500	ENSMUSG00000028622	Mrpl37	2300004O14Rik|AI132596|MRP-L2|Rpml2	mitochondrial ribosomal protein L37	protein-coding	0.005000	0.507463	
mm_58696.1	chr7	12925423	12925623	+	1	NA	NA	NA	-1893	NM_029809	381845	Mm.439896	NM_029809	ENSMUSG00000033967	Rnf225	2310014L17Rik|AV237412|C77118	ring finger protein 225	protein-coding	0.045000	0.517413	
mm_124999.1	chr15	23038750	23038950	+	1	NA	NA	NA	2387	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l	cadherin 18	protein-coding	0.005000	0.288557	
mm_122721.1	chr14	52296333	52296533	-	1	NA	NA	NA	8691	NM_019721	56335	Mm.271759	NM_019721	ENSMUSG00000022160	Mettl3	2310024F18Rik|M6A|Spo8	methyltransferase like 3	protein-coding	0.000000	0.338308	
mm_136191.1	chr16	89403705	89403905	-	1	NA	NA	NA	-31	NM_028621	170656	Mm.46109	NM_028621	ENSMUSG00000058368	Krtap21-1	1110017B05Rik|AI506979|KAP21.1|Krtap16-7	keratin associated protein 21-1	protein-coding	0.010000	0.487562	-33(GGGTATAAAAGT,-,0.00)
mm_95922.1	chr11	58274930	58275130	+	1	NA	NA	NA	-32039	NM_182996	103836	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	0.010000	0.522388	
mm_160108.1	chr7	24587424	24587624	+	1	NA	NA	NA	-19	NM_023154	66071	Mm.29553	NM_023154	ENSMUSG00000064254	Ethe1	0610025L15Rik|Hsco	ethylmalonic encephalopathy 1	protein-coding	0.065000	0.666667	
mm_129940.1	chr15	84856003	84856203	-	1	NA	NA	NA	26	NM_001081166	271305	Mm.101022	NM_001081166	ENSMUSG00000016624	Phf21b	A730032D07Rik	PHD finger protein 21B	protein-coding	0.160000	0.771144	
mm_30395.1	chr3	152248263	152248463	-	1	NA	NA	NA	17957	NM_199465	68810	Mm.200188	NM_199465	ENSMUSG00000039103	Nexn	1110046H09Rik|AA553326|NELIN	nexilin	protein-coding	0.000000	0.398010	
mm_109531.1	chr12	111538747	111538947	+	1	NA	NA	NA	746	NM_173363	217869	Mm.271222	NM_173363	ENSMUSG00000021282	Eif5	2810011H21Rik|D12Ertd549e	eukaryotic translation initiation factor 5	protein-coding	0.145000	0.761194	
mm_10517.1	chr2	16356631	16356831	+	1	NA	NA	NA	427	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.090000	0.646766	
mm_68938.1	chr7	126502266	126502466	-	1	NA	NA	NA	59	NM_001347658	233871	Mm.231450	NM_183020	ENSMUSG00000032637	Atxn2l	A2D|A2LG|A2RP|A2lp|Atxnl2	ataxin 2-like	protein-coding	0.105000	0.681592	
mm_29361.1	chr3	108562283	108562483	-	1	NA	NA	NA	83	NM_026198	67495	Mm.32615	NM_026198	ENSMUSG00000068732	Tmem167b	2010200O16Rik	transmembrane protein 167B	protein-coding	0.110000	0.641791	
mm_128254.1	chr15	36770972	36771172	-	1	NA	NA	NA	19860	NM_001253807	22631	Mm.3360	NM_011740	ENSMUSG00000022285	Ywhaz	1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	protein-coding	0.015000	0.547264	18(TGCCCTAAATGG,-,0.00),20(CCCTAAATGGTC,+,0.00),43(CCCTTTAAAATC,+,0.00),44(CCTTTAAAATCC,+,0.00)
mm_172336.1	chr7	109986033	109986233	-	1	NA	NA	NA	97	NM_153525	233724	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	0.080000	0.601990	
mm_146692.1	chr18	12879877	12880077	-	1	NA	NA	NA	2	NM_001252489	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.085000	0.691542	
mm_53251.1	chr6	127790253	127790453	+	1	NA	NA	NA	-2210	NR_106092	102466996		NR_106092	ENSMUSG00000104804	Mir7233	mmu-mir-7233	microRNA 7233	ncRNA	0.020000	0.487562	-33(TTTTATAAAAGG,-,0.00),51(GGACATTAAAGG,-,0.00)
mm_1192.1	chr1	62703350	62703550	+	1	NA	NA	NA	133	NM_001077405	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.105000	0.736318	-94(GGCCTGAAAAGG,-,0.00)
mm_80956.1	chr9	103008080	103008280	+	1	NA	NA	NA	-309	NM_033314	24059	Mm.207106	NM_033314	ENSMUSG00000032548	Slco2a1	2310021C19Rik|Pgt|Slc21a2|mPgt	solute carrier organic anion transporter family, member 2a1	protein-coding	0.040000	0.651741	
mm_56060.1	chr6	86775012	86775212	-	1	NA	NA	NA	2	NM_001331120	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.025000	0.457711	
mm_62125.1	chr7	96946788	96946988	+	1	NA	NA	NA	-4639	NM_153591	244141	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.020000	0.477612	
mm_158193.1	chrX	104670924	104671124	-	1	NA	NA	NA	40	NM_175358	108672	Mm.30574	NM_175358	ENSMUSG00000033906	Zdhhc15	6030457O13Rik	zinc finger, DHHC domain containing 15	protein-coding	0.045000	0.691542	
mm_12040.1	chr2	58769886	58770086	+	1	NA	NA	NA	14802	NM_029692	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.000000	0.407960	48(CACCATATATGC,-,0.00),50(CCATATATGCAC,+,0.00),77(CCATATATACCA,+,0.00)
mm_104514.1	chr11	96005880	96006080	-	1	NA	NA	NA	-36	NM_009951	140486	Mm.294769	NM_009951	ENSMUSG00000013415	Igf2bp1	AL024068|AW549074|CRD-BP|Crdbp|D030026A21Rik|D11Moh40e|D11Moh45|IMP-1|IMP1|Neilsen|ZBP-1|Zbp1|mir-3063	insulin-like growth factor 2 mRNA binding protein 1	protein-coding	0.100000	0.592040	
mm_22296.1	chr2	180273361	180273561	-	1	NA	NA	NA	4	NM_145851	252966	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0.185000	0.820896	
mm_137724.1	chr17	29268724	29268924	+	1	NA	NA	NA	36	NM_030561	80748	Mm.290116	NM_030561	ENSMUSG00000052712	BC004004	2400006G15Rik	cDNA sequence BC004004	protein-coding	0.105000	0.651741	
mm_116322.1	chr13	37979420	37979620	-	1	NA	NA	NA	14670	NM_025965	107513	Mm.426670	NM_025965	ENSMUSG00000021427	Ssr1	2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA	signal sequence receptor, alpha	protein-coding	0.015000	0.368159	
mm_44224.1	chr5	4804437	4804637	-	1	NA	NA	NA	-46321	NM_021457	14362	Mm.246003	NM_021457	ENSMUSG00000044674	Fzd1	AW227548|FZ-1|Fz1	frizzled class receptor 1	protein-coding	0.010000	0.502488	
mm_44783.1	chr5	32134775	32134975	-	1	NA	NA	NA	-1597	NM_008037	14284	Mm.24684	NM_008037	ENSMUSG00000029135	Fosl2	Fra-2	fos-like antigen 2	protein-coding	0.040000	0.388060	
mm_34556.1	chr4	149629238	149629438	+	1	NA	NA	NA	26229	NR_105990	102465983		NR_105990	ENSMUSG00000098580	Mir7023	Gm27912|mmu-mir-7023	microRNA 7023	ncRNA	0.055000	0.587065	
mm_125794.1	chr15	74818987	74819187	+	1	NA	NA	NA	11	NM_010416	15202	Mm.17336	NM_010416	ENSMUSG00000068600	Gml2	1700057K19Rik|HemT|Hemt1	glycosylphosphatidylinositol anchored molecule like 2	protein-coding	0.040000	0.547264	
mm_108882.1	chr12	99965130	99965330	+	1	NA	NA	NA	731	NM_001164427	217826	Mm.312335	NM_146037	ENSMUSG00000045404	Kcnk13	BB085247|F730021E22Rik|Gm1570|Gm1685	potassium channel, subfamily K, member 13	protein-coding	0.060000	0.641791	
mm_136818.1	chr17	12403985	12404185	+	1	NA	NA	NA	25476	NM_008877	18815	Mm.971	NM_008877	ENSMUSG00000059481	Plg	AI649309|Pg	plasminogen	protein-coding	0.030000	0.567164	
mm_152692.1	chr19	16780885	16781085	-	1	NA	NA	NA	-52	NM_173028	271564	Mm.211963	NM_173028	ENSMUSG00000046230	Vps13a	4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|mKIAA0986	vacuolar protein sorting 13A	protein-coding	0.170000	0.781095	
mm_37028.1	chr4	114987064	114987264	-	1	NA	NA	NA	64	NM_025647	66588	Mm.294159	NM_025647	ENSMUSG00000028719	Cmpk1	0610011D08Rik|CK|Cmpk|UMP-CMPk	cytidine monophosphate (UMP-CMP) kinase 1	protein-coding	0.150000	0.796020	
mm_164765.1	chr17	85621189	85621389	+	1	NA	NA	NA	455	NM_011381	20473	Mm.370208	NM_011381	ENSMUSG00000038805	Six3	E130112M24Rik|Six3a|Six3alpha|Six3b|Six3beta	sine oculis-related homeobox 3	protein-coding	0.090000	0.631841	
mm_100434.1	chr11	119469087	119469287	+	1	NA	NA	NA	-22160	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.000000	0.398010	
mm_101799.1	chr11	46238705	46238905	-	1	NA	NA	NA	3248	NM_177075	320116	Mm.39600	NM_177075	ENSMUSG00000048721	Fndc9	C030019I05Rik	fibronectin type III domain containing 9	protein-coding	0.010000	0.477612	
mm_66374.1	chr7	43656575	43656775	-	1	NA	NA	NA	3486	NM_031181	83382	Mm.157702	NM_031181	ENSMUSG00000030474	Siglece	Cd170|Siglec12|Siglec5|Siglec9|Siglecl1|mSiglec-E	sialic acid binding Ig-like lectin E	protein-coding	0.020000	0.512438	-100(CTTTTTATGTCC,+,0.00)
mm_88780.1	chr10	80589284	80589484	+	1	NA	NA	NA	957	NM_145421	216169	Mm.29802	NM_145421	ENSMUSG00000003346	Abhd17a	1700013O15Rik|BC005632|D10Bwg1364e|Fam108a	abhydrolase domain containing 17A	protein-coding	0.010000	0.532338	
mm_29371.1	chr3	108711356	108711556	-	1	NA	NA	NA	10843	NM_029522	76123	Mm.226941	NM_029522	ENSMUSG00000027883	Gpsm2	6230410J09Rik|LGN|Pins	G-protein signalling modulator 2 (AGS3-like, C. elegans)	protein-coding	0.015000	0.462687	
mm_120908.1	chr14	76110807	76111007	+	1	NA	NA	NA	16	NM_013745	27275	Mm.21138	NM_013745	ENSMUSG00000022009	Nufip1	Nufip	nuclear fragile X mental retardation protein interacting protein 1	protein-coding	0.085000	0.592040	
mm_20295.1	chr2	126933135	126933335	-	1	NA	NA	NA	0	NM_023220	66552	Mm.269928	NM_023220	ENSMUSG00000027366	Sppl2a	2010106G01Rik|C130089K23Rik	signal peptide peptidase like 2A	protein-coding	0.070000	0.572139	
mm_14582.1	chr2	135764794	135764994	+	1	NA	NA	NA	23064	NM_013829	18798	Mm.38009	NM_013829	ENSMUSG00000039943	Plcb4	A930039J07Rik|AI854601|C230058B11Rik	phospholipase C, beta 4	protein-coding	0.010000	0.552239	
mm_94379.1	chr11	5146494	5146694	+	1	NA	NA	NA	5628	NM_080595	140703	Mm.840	NM_080595	ENSMUSG00000034164	Emid1	AW122071|CO-5|Emu1	EMI domain containing 1	protein-coding	0.015000	0.497512	
mm_159765.1	chr5	95775924	95776124	+	1	NA	NA	NA	154	NM_001122668	665943	Mm.348795	NM_001122668	ENSMUSG00000072813	E330014E10Rik	-	RIKEN cDNA E330014E10 gene	protein-coding	0.005000	0.477612	
mm_24096.1	chr3	88043013	88043213	+	1	NA	NA	NA	7	NM_025663	66614	Mm.46029	NM_025663	ENSMUSG00000028069	Gpatch4	2610029K21Rik|Gpatc4	G patch domain containing 4	protein-coding	0.040000	0.572139	
mm_112265.1	chr12	114060219	114060419	-	1	NA	NA	NA	409147	NR_106062	102465663		NR_106062	ENSMUSG00000105438	Mir7094-1	mmu-mir-7094-1	microRNA 7094-1	ncRNA	0.000000	0.422886	
mm_143605.1	chr17	78417957	78418157	-	1	NA	NA	NA	95	NM_001285949	225020	Mm.236835	NM_199448	ENSMUSG00000056121	Fez2	9030616F16|D17Ertd315e	fasciculation and elongation protein zeta 2 (zygin II)	protein-coding	0.120000	0.721393	
mm_163437.1	chr12	85472235	85472435	+	1	NA	NA	NA	-1566	NM_010234	14281	Mm.246513	NM_010234	ENSMUSG00000021250	Fos	D12Rfj1|c-fos|cFos	FBJ osteosarcoma oncogene	protein-coding	0.095000	0.646766	
mm_105626.1	chr11	106897042	106897242	-	1	NA	NA	NA	23573	NM_025481	66313	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	0.005000	0.402985	
mm_126168.1	chr15	78560779	78560979	+	1	NA	NA	NA	11904	NM_009008	19354	Mm.1972	NM_009008	ENSMUSG00000033220	Rac2	AI323801|AI452260	RAS-related C3 botulinum substrate 2	protein-coding	0.015000	0.492537	
mm_86533.1	chr10	7836378	7836578	+	1	NA	NA	NA	97	NR_039563	100628581		NR_039563	ENSMUSG00000093060	Mir5104	mir-5104|mmu-mir-5104|mu-mir-5104	microRNA 5104	ncRNA	0.020000	0.502488	
mm_70274.1	chr8	3598286	3598486	+	1	NA	NA	NA	10936	NM_001347111	69697	Mm.390010	NM_027171	ENSMUSG00000044433	Camsap3	2310057J16Rik|Kiaa1543|Nezha	calmodulin regulated spectrin-associated protein family, member 3	protein-coding	0.000000	0.502488	
mm_123582.1	chr14	67055705	67055905	-	1	NA	NA	NA	16666	NM_028032	71978	Mm.273997	NM_028032	ENSMUSG00000022052	Ppp2r2a	2410004D02Rik|mKIAA1541	protein phosphatase 2, regulatory subunit B, alpha	protein-coding	0.015000	0.358209	
mm_164532.1	chr17	6253696	6253896	+	1	NA	NA	NA	-16674	NM_001033178	77106	Mm.381893	NM_001033178	ENSMUSG00000038141	Tmem181a	5930418K15Rik|C76977|Gpr178|Tmem181|mKIAA1423	transmembrane protein 181A	protein-coding	0.095000	0.696517	
mm_24527.1	chr3	93273422	93273622	+	1	NA	NA	NA	-46227	NM_133698	68723	Mm.208047	NM_133698	ENSMUSG00000041991	Hrnr	1110033K19Rik|A530063N20Rik|S100a18	hornerin	protein-coding	0.005000	0.437811	-32(CTATATAAAAAG,-,0.00)
mm_82837.1	chr9	31158376	31158576	-	1	NA	NA	NA	-26677	NM_011176	19143	Mm.243926	NM_011176	ENSMUSG00000031995	St14	Epithin|MT-SP1|Prss14|Tmprss14|mCAP3|matriptase	suppression of tumorigenicity 14 (colon carcinoma)	protein-coding	0.005000	0.437811	
mm_138930.1	chr17	43801795	43801995	+	1	NA	NA	NA	44	NM_207649	53901	Mm.251242	NM_030598	ENSMUSG00000039601	Rcan2	Csp2|Dscr1l1|MCIP2|ZAKI-4	regulator of calcineurin 2	protein-coding	0.130000	0.766169	
mm_92615.1	chr10	80139259	80139459	-	1	NA	NA	NA	8	NR_036582	100503659	Mm.485395	NM_015761	ENSMUSG00000035640	Cbarp	9630008F14|Dos|R29144/1	calcium channel, voltage-dependent, beta subunit associated regulatory protein	protein-coding	0.130000	0.781095	
mm_99571.1	chr11	103966653	103966853	+	1	NA	NA	NA	28	NM_001304574	11841	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.090000	0.597015	
mm_12778.1	chr2	79328726	79328926	+	1	NA	NA	NA	73400	NM_010576	16401	Mm.31903	NM_010576	ENSMUSG00000027009	Itga4	CD49D|Itga4B	integrin alpha 4	protein-coding	0.005000	0.318408	
mm_164012.1	chr14	70466516	70466716	+	1	NA	NA	NA	9099	NM_145981	105653	Mm.192598	NM_145981	ENSMUSG00000003469	Phyhip	AW049870|C630010D02Rik|Lnap1ip|PAHX-AP#1|PAHX-AP1	phytanoyl-CoA hydroxylase interacting protein	protein-coding	0.010000	0.477612	
mm_74995.1	chr8	27202474	27202674	-	1	NA	NA	NA	-27	NM_029674	76615	Mm.272794	NM_029674	ENSMUSG00000039720	Got1l1	1700083M11Rik	glutamic-oxaloacetic transaminase 1-like 1	protein-coding	0.025000	0.537313	
mm_133370.1	chr16	84709226	84709426	+	1	NA	NA	NA	-3697	NR_132106	100653389	Mm.261808	NR_132106	ENSMUSG00000097418	Mir155hg	Bic|Gm26667	Mir155 host gene (non-protein coding)	ncRNA	0.000000	0.313433	-84(TTGTATATAAGC,-,0.00)
mm_127856.1	chr15	8350226	8350426	-	1	NA	NA	NA	94137	NM_027707	71175	Mm.240329	NM_027707	ENSMUSG00000022141	Nipbl	Idn3	Nipped-B homolog (Drosophila)	protein-coding	0.005000	0.368159	
mm_30061.1	chr3	137864224	137864424	-	1	NA	NA	NA	-163	NM_001316995	51788	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2a.z-1	H2A histone family, member Z	protein-coding	0.115000	0.716418	
mm_143959.1	chr17	87023310	87023510	-	1	NA	NA	NA	1991	NM_008838	18701	Mm.219685	NM_008838	ENSMUSG00000024145	Pigf	-	phosphatidylinositol glycan anchor biosynthesis, class F	protein-coding	0.005000	0.373134	-32(ACCTATATAAGC,-,0.00)
mm_53921.1	chr6	4086795	4086995	-	1	NA	NA	NA	32	NM_009748	12068	Mm.286457	NM_009748	ENSMUSG00000032757	Bet1	AW555236|Bet-1	Bet1 golgi vesicular membrane trafficking protein	protein-coding	0.060000	0.552239	
mm_78976.1	chr9	45370147	45370347	+	1	NA	NA	NA	62	NM_022004	59095	Mm.208287	NM_022004	ENSMUSG00000066705	Fxyd6	0610030I18Rik|Php	FXYD domain-containing ion transport regulator 6	protein-coding	0.075000	0.631841	
mm_155096.1	chrX	48270377	48270577	+	1	NA	NA	NA	13543	NM_028276	72554	Mm.336045	NM_028276	ENSMUSG00000063785	Utp14a	2700066J21Rik|JsdX|NY-CO-16|SDCCAG16|T25628|mKIAA0266	UTP14A small subunit processome component	protein-coding	0.015000	0.442786	
mm_83303.1	chr9	44022075	44022275	-	1	NA	NA	NA	-21209	NM_009382	21838	Mm.3951	NM_009382	ENSMUSG00000032011	Thy1	CD90|T25|Thy-1|Thy-1.2|Thy1.1|Thy1.2	thymus cell antigen 1, theta	protein-coding	0.010000	0.407960	
mm_73449.1	chr8	106282154	106282354	+	1	NA	NA	NA	25	NR_126090	75044	Mm.445896	NR_126090		4930506A18Rik	-	RIKEN cDNA 4930506A18 gene	ncRNA	0.005000	0.467662	
mm_91798.1	chr10	53519609	53519809	-	1	NA	NA	NA	-720	NR_037973	100502868	Mm.297722	NR_037973		Gm20597	B230314j19	predicted gene, 20597	ncRNA	0.015000	0.497512	
mm_91906.1	chr10	60219933	60220133	-	1	NA	NA	NA	-773	NM_016803	53374	Mm.12866	NM_016803	ENSMUSG00000057337	Chst3	C6ST|C6ST-1|GST-0	carbohydrate (chondroitin 6/keratan) sulfotransferase 3	protein-coding	0.015000	0.412935	-65(TCCTTTATAGAC,+,0.00)
mm_132288.1	chr16	33184999	33185199	+	1	NA	NA	NA	28	NM_176840	106326	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.080000	0.656716	
mm_148654.1	chr19	5493816	5494016	+	1	NA	NA	NA	3461	NM_007687	12631	Mm.329655	NM_007687	ENSMUSG00000056201	Cfl1	AA959946|Cof	cofilin 1, non-muscle	protein-coding	0.000000	0.442786	
mm_119360.1	chr14	41115802	41116002	+	1	NA	NA	NA	10869	NM_133653	11720	Mm.14064	NM_133653	ENSMUSG00000037798	Mat1a	AI046368|AdoMet|Ams|MAT|MATA1|SAMS|SAMS1	methionine adenosyltransferase I, alpha	protein-coding	0.010000	0.402985	
mm_100474.1	chr11	120098847	120099047	+	1	NA	NA	NA	13	NM_001110242	208501	Mm.46699	NM_001110242	ENSMUSG00000078572	Ndufaf8	1810043H04Rik	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex assembly factor 8	protein-coding	0.085000	0.601990	16(GAGCCTAAAAGG,-,0.00)
mm_135090.1	chr16	34573440	34573640	-	1	NA	NA	NA	-59513	NM_177357	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.095000	0.711443	
mm_133942.1	chr16	3908430	3908630	-	1	NA	NA	NA	159	NM_028484	73261	Mm.486226	NM_028484	ENSMUSG00000005983	1700037C18Rik	2810022L20Rik	RIKEN cDNA 1700037C18 gene	protein-coding	0.035000	0.567164	
mm_25333.1	chr3	106573804	106574004	+	1	NA	NA	NA	-26102	NM_133869	99712	Mm.429443	NM_133869	ENSMUSG00000040774	Cept1	9930118K05Rik|mCEPT1	choline/ethanolaminephosphotransferase 1	protein-coding	0.005000	0.318408	
mm_40196.1	chr5	36868414	36868614	+	1	NA	NA	NA	-56	NM_172994	269643	Mm.41694	NM_172994	ENSMUSG00000029120	Ppp2r2c	6330548O06Rik|IMYPNO|IMYPNO1|PR52	protein phosphatase 2, regulatory subunit B, gamma	protein-coding	0.185000	0.840796	
mm_127385.1	chr15	101040765	101040965	+	1	NA	NA	NA	13534	NM_001214911	668225	Mm.385011	NM_001214911	ENSMUSG00000095440	Fignl2	EG668225	fidgetin-like 2	protein-coding	0.035000	0.507463	
mm_106617.1	chr11	120819072	120819272	-	1	NA	NA	NA	5375	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.020000	0.601990	
mm_48328.1	chr5	138996002	138996202	-	1	NA	NA	NA	-1149	NM_008808	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	-	platelet derived growth factor, alpha	protein-coding	0.070000	0.656716	-35(CCTTTTATGGAG,+,0.00)
mm_52426.1	chr6	113483207	113483407	+	1	NA	NA	NA	-262	NM_133930	171508	Mm.41593	NM_133930	ENSMUSG00000030284	Creld1	AI843811	cysteine-rich with EGF-like domains 1	protein-coding	0.080000	0.631841	
mm_77814.1	chr9	3199818	3200018	+	1	NA	NA	NA	-105	NR_027988	114673	Mm.422774	NM_053265	ENSMUSG00000042360	4930433N12Rik	-	RIKEN cDNA 4930433N12 gene	ncRNA	0.055000	0.636816	
mm_10378.1	chr2	11778433	11778633	+	1	NA	NA	NA	780	NM_177268	320816	Mm.260201	NM_177268	ENSMUSG00000047909	Ankrd16	2810455F06Rik|AI646698|D430029B21Rik	ankyrin repeat domain 16	protein-coding	0.055000	0.611940	
mm_62197.1	chr7	97788269	97788469	+	1	NA	NA	NA	-50122	NM_175105	66333	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.100000	0.721393	
mm_49144.1	chr6	11907672	11907872	+	1	NA	NA	NA	-326	NM_010886	17992	Mm.415865	NM_010886	ENSMUSG00000029632	Ndufa4	MLRQ	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4	protein-coding	0.155000	0.751244	
mm_146312.1	chr18	80362680	80362880	+	1	NA	NA	NA	1474	NM_001190373	240444	Mm.279568	NM_001190373	ENSMUSG00000059852	Kcng2	AA591524	potassium voltage-gated channel, subfamily G, member 2	protein-coding	0.065000	0.587065	
mm_119928.1	chr14	54969143	54969343	+	1	NA	NA	NA	456	NR_033497	791403	Mm.319176	NR_033497	ENSMUSG00000097652	Mhrt	D830015G02Rik|ENSMUSG00000053118|Myheart	myosin heavy chain associated RNA transcript	ncRNA	0.010000	0.557214	50(TCTTTTAGGCTC,+,0.00)
mm_172798.1	chr9	114432002	114432202	+	1	NA	NA	NA	31007	NM_001200002	100504715	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	0.035000	0.492537	
mm_164188.1	chr15	77933530	77933730	-	1	NA	NA	NA	-4636	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.005000	0.422886	22(AGCCTTTAAAGG,-,0.00),23(GCCTTTAAAGGC,+,0.00),23(GCCTTTAAAGGC,-,0.00),24(CCTTTAAAGGCT,+,0.00)
mm_2976.1	chr1	133108033	133108233	+	1	NA	NA	NA	-23033	NM_133819	108954	Mm.293628	NM_133819	ENSMUSG00000046062	Ppp1r15b	1810033K10Rik|AI606441|C530022L24Rik|CReP	protein phosphatase 1, regulatory (inhibitor) subunit 15b	protein-coding	0.000000	0.363184	
mm_96735.1	chr11	69765812	69766012	+	1	NA	NA	NA	0	NM_029348	75580	Mm.426361	NM_029348	ENSMUSG00000018750	Zbtb4	2310026P19Rik|9230111I22Rik|mKIAA1538	zinc finger and BTB domain containing 4	protein-coding	0.110000	0.815920	
mm_165539.1	chr2	180621700	180621900	-	1	NA	NA	NA	20891	NM_178254	277353	Mm.473700	NM_178254	ENSMUSG00000038932	Tcfl5	AV260129|Figlb|Sosf1	transcription factor-like 5 (basic helix-loop-helix)	protein-coding	0.000000	0.333333	
mm_121233.1	chr14	103055761	103055961	+	1	NA	NA	NA	8849	NM_008392	16365	Mm.4662	NM_008392	ENSMUSG00000022126	Acod1	AI323667|CAD|Irg1	aconitate decarboxylase 1	protein-coding	0.005000	0.477612	
mm_163943.1	chr14	51145605	51145805	-	1	NA	NA	NA	1062	NM_011271	19752	Mm.235538	NM_011271	ENSMUSG00000035896	Rnase1	AI574248|Rib-1|Rib1	ribonuclease, RNase A family, 1 (pancreatic)	protein-coding	0.025000	0.532338	
mm_137817.1	chr17	30088690	30088890	+	1	NA	NA	NA	83703	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.005000	0.507463	
mm_117965.1	chr13	99516572	99516772	-	1	NA	NA	NA	-70	NM_008634	17755	Mm.4173	NM_008634	ENSMUSG00000052727	Map1b	A230055D22|AI843217|LC1|MAP5|Mtap-5|Mtap1b|Mtap5	microtubule-associated protein 1B	protein-coding	0.090000	0.691542	-34(CTCCATATAAAC,-,0.00),-32(CCATATAAACGG,+,0.00)
mm_167807.1	chr9	123928777	123928977	-	1	NA	NA	NA	39815	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.015000	0.477612	
mm_78230.1	chr9	21592792	21592992	+	1	NA	NA	NA	-61	NM_001205157	74766	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	0.065000	0.532338	78(GGCTCTTAAGAG,-,0.00)
mm_165447.1	chr2	155869136	155869336	+	1	NA	NA	NA	-34382	NM_027788	71405	Mm.260918	NM_027788	ENSMUSG00000074647	Fam83c	5530400B04Rik	family with sequence similarity 83, member C	protein-coding	0.020000	0.507463	
mm_41135.1	chr5	87808023	87808223	+	1	NA	NA	NA	2	NM_009973	12992	Mm.153308	NM_009973	ENSMUSG00000061388	Csn1s2b	AW987150|Csnd|Csne	casein alpha s2-like B	protein-coding	0.010000	0.358209	-33(GGGTTTAAATAG,-,0.00),-31(GTTTAAATAGGG,+,0.00)
mm_60811.1	chr7	45674928	45675128	+	1	NA	NA	NA	-8634	NM_001271993	14344	Mm.290046	NM_018876	ENSMUSG00000055978	Fut2	-	fucosyltransferase 2	protein-coding	0.005000	0.477612	
mm_46874.1	chr5	113832533	113832733	-	1	NA	NA	NA	-2132	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.010000	0.577114	-54(GCTTTAAGGCCC,+,0.00)
mm_101087.1	chr11	11836122	11836322	-	1	NA	NA	NA	-27260	NM_001163360	60530	Mm.236114	NM_021891	ENSMUSG00000035455	Fignl1	-	fidgetin-like 1	protein-coding	0.000000	0.393035	
mm_129216.1	chr15	76523142	76523342	-	1	NA	NA	NA	-1113	NM_130893	170729	Mm.218747	NM_130893	ENSMUSG00000048385	Scrt1	-	scratch family zinc finger 1	protein-coding	0.070000	0.661692	
mm_88880.1	chr10	81120860	81121060	+	1	NA	NA	NA	15045	NM_001347144	26396	Mm.275436	NM_023138	ENSMUSG00000035027	Map2k2	AA589381|MEK2|MK2|Prkmk2	mitogen-activated protein kinase kinase 2	protein-coding	0.015000	0.527363	
mm_125045.1	chr15	25812725	25812925	+	1	NA	NA	NA	-30473	NM_001034851	66270	Mm.25311	NM_025459	ENSMUSG00000022270	Fam134b	1810015C04Rik|AU015349	family with sequence similarity 134, member B	protein-coding	0.025000	0.393035	
mm_122491.1	chr14	46575752	46575952	-	1	NA	NA	NA	-1	NR_046459	100873094	Mm.318596	NR_046459		Rubie	-	RNA upstream of Bmp4 expressed in inner ear	ncRNA	0.020000	0.472637	-34(GTTCATAAAAGC,-,0.00)
mm_765.1	chr1	44101539	44101739	+	1	NA	NA	NA	749	NM_029368	75623	Mm.348017	NM_029368	ENSMUSG00000026049	Tex30	1700029F09Rik|3110030D08Rik	testis expressed 30	protein-coding	0.055000	0.572139	
mm_116390.1	chr13	41184902	41185102	-	1	NA	NA	NA	35160	NM_001311121	54326	Mm.2567	NM_019423	ENSMUSG00000021364	Elovl2	AI317360|Ssc2	elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2	protein-coding	0.035000	0.457711	
mm_70697.1	chr8	15027871	15028071	+	1	NA	NA	NA	16946	NM_029116	74901	Mm.46675	NM_029116	ENSMUSG00000055675	Kbtbd11	2900016B01Rik|4930465M17Rik|mKIAA0711	kelch repeat and BTB (POZ) domain containing 11	protein-coding	0.155000	0.741294	
mm_97509.1	chr11	78498973	78499173	+	1	NA	NA	NA	-47	NM_011707	22370	Mm.3667	NM_011707	ENSMUSG00000017344	Vtn	AI256434|Vn	vitronectin	protein-coding	0.020000	0.527363	-91(CTTTATAAAAAG,-,0.00)
mm_108780.1	chr12	89834736	89834936	+	1	NA	NA	NA	22353	NM_001252074	18191	Mm.425766	NM_172544	ENSMUSG00000066392	Nrxn3	-	neurexin III	protein-coding	0.005000	0.388060	
mm_25749.1	chr3	123267115	123267315	+	1	NA	NA	NA	-281	NM_027135	69608	Mm.29293	NM_027135	ENSMUSG00000039234	Sec24d	2310020L09Rik|Gm1349	Sec24 related gene family, member D (S. cerevisiae)	protein-coding	0.075000	0.616915	
mm_37019.1	chr4	113999426	113999626	-	1	NA	NA	NA	-23	NM_001167876	242627	Mm.484115	NM_001167876	ENSMUSG00000078598	Skint5	OTTMUSG00000008560|Skint-5	selection and upkeep of intraepithelial T cells 5	protein-coding	0.005000	0.393035	
mm_113141.1	chr13	24651336	24651536	+	1	NA	NA	NA	12788	NM_029679	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Fam65b	-	family with sequence similarity 65, member B	protein-coding	0.005000	0.343284	
mm_172932.1	chr9	7751576	7751776	+	1	NA	NA	NA	-12401	NM_133739	71929	Mm.283293	NM_133739	ENSMUSG00000050912	Tmem123	2310075C12Rik	transmembrane protein 123	protein-coding	0.040000	0.502488	
mm_71137.1	chr8	39045576	39045776	+	1	NA	NA	NA	39809	NM_030254	80286	Mm.272722	NM_030254	ENSMUSG00000039530	Tusc3	AU022242|BC003311|N33	tumor suppressor candidate 3	protein-coding	0.005000	0.398010	-71(CTTTTTATGCAG,+,0.00)
mm_162603.1	chr1	183221335	183221535	-	1	NA	NA	NA	94	NM_001278218	68897	Mm.327216	NM_026866	ENSMUSG00000030768	Disp1	1190008H24Rik|DispA	dispatched RND transporter family member 1	protein-coding	0.160000	0.766169	
mm_63194.1	chr7	125603521	125603721	+	1	NA	NA	NA	192	NM_021887	60504	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.020000	0.626866	
mm_2137.1	chr1	88073673	88073873	+	1	NA	NA	NA	2994	NM_201644	394434	Mm.300095	NM_201644	ENSMUSG00000090175	Ugt1a9	UDPGT|UDPGT 1-9|UGT1-09|UGT1.9|UGTP4|Ugt1a12|mUGTBr/P	UDP glucuronosyltransferase 1 family, polypeptide A9	protein-coding	0.000000	0.308458	
mm_71824.1	chr8	68895749	68895949	+	1	NA	NA	NA	15294	NM_008509	16956	Mm.1514	NM_008509	ENSMUSG00000015568	Lpl	-	lipoprotein lipase	protein-coding	0.015000	0.477612	
mm_12168.1	chr2	62610394	62610594	+	1	NA	NA	NA	35761	NM_027835	71586	Mm.136224	NM_027835	ENSMUSG00000026896	Ifih1	9130009C22Rik|Helicard|Hlcd|MDA5|RLR-2	interferon induced with helicase C domain 1	protein-coding	0.010000	0.422886	
mm_105982.1	chr11	115612427	115612627	-	1	NA	NA	NA	-24	NM_001243586	69674	Mm.390387	NM_027162	ENSMUSG00000020743	Mif4gd	1110014L05Rik|2310075G12Rik	MIF4G domain containing	protein-coding	0.160000	0.781095	
mm_114182.1	chr13	55645327	55645527	+	1	NA	NA	NA	10428	NM_001282055	212880	Mm.202725	NM_145975	ENSMUSG00000021500	Ddx46	2200005K02Rik|8430438J23Rik|AI325430|AI957095|mKIAA0801	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	protein-coding	0.025000	0.507463	
mm_39259.1	chr5	3543997	3544197	+	1	NA	NA	NA	264	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.165000	0.781095	
mm_58618.1	chr7	5068852	5069052	+	1	NA	NA	NA	6809	NM_001205231	22185	Mm.360389	NM_133671	ENSMUSG00000030435	U2af2	65kDa	U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2	protein-coding	0.015000	0.601990	
mm_64016.1	chr7	140247063	140247263	+	1	NA	NA	NA	-138	NM_175533	244234	Mm.85125	NM_175533	ENSMUSG00000054672	5830411N06Rik	Scart2	RIKEN cDNA 5830411N06 gene	protein-coding	0.010000	0.582090	
mm_122439.1	chr14	45219341	45219541	-	1	NA	NA	NA	-16	NM_001310534	70561	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.080000	0.626866	
mm_79680.1	chr9	59751084	59751284	+	1	NA	NA	NA	10	NM_173018	270163	Mm.249545	NM_173018	ENSMUSG00000039585	Myo9a	4732465J09Rik|C130068I12Rik|C230003M11	myosin IXa	protein-coding	0.100000	0.716418	
mm_149992.1	chr19	29252370	29252570	+	1	NA	NA	NA	667	NM_008413	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.030000	0.502488	
mm_163825.1	chr14	19416799	19416999	+	1	NA	NA	NA	185688	NM_001024706	432825	Mm.327147	NM_001024706	ENSMUSG00000095024	Gm5458	EG432825	predicted gene 5458	protein-coding	0.025000	0.328358	
mm_113554.1	chr13	38151195	38151395	+	1	NA	NA	NA	1	NM_023842	109620	Mm.355327	NM_023842	ENSMUSG00000054889	Dsp	2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP|rul	desmoplakin	protein-coding	0.105000	0.756219	
mm_99714.1	chr11	106256056	106256256	+	1	NA	NA	NA	-29	NM_008950	19184	Mm.272361	NM_008950	ENSMUSG00000020708	Psmc5	mSUG1	protease (prosome, macropain) 26S subunit, ATPase 5	protein-coding	0.090000	0.636816	
mm_154301.1	chr19	61224893	61225093	-	1	NA	NA	NA	3425	NM_009970	12982	Mm.287228	NM_009970	ENSMUSG00000059326	Csf2ra	CD116|Csfgmra|GM-CSF-Ra|GM-CSFR	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)	protein-coding	0.050000	0.606965	
mm_130377.1	chr15	97831459	97831659	-	1	NA	NA	NA	208	NM_019572	56233	Mm.384027	NM_019572	ENSMUSG00000022475	Hdac7	5830434K02Rik|HD7|HD7a|Hdac7a|mFLJ00062	histone deacetylase 7	protein-coding	0.060000	0.696517	
mm_96578.1	chr11	69060020	69060220	+	1	NA	NA	NA	345	NM_028005	71923	Mm.340257	NM_028005	ENSMUSG00000045176	Borcs6	2310047M10Rik	BLOC-1 related complex subunit 6	protein-coding	0.110000	0.736318	
mm_115892.1	chr13	22009640	22009840	-	1	NA	NA	NA	1	NM_019429	54373	Mm.32043	NM_019429	ENSMUSG00000006179	Prss16	AI448615|TSSP	protease, serine 16 (thymus)	protein-coding	0.005000	0.502488	
mm_110341.1	chr12	36042396	36042596	-	1	NA	NA	NA	-18	NM_025359	66109	Mm.254663	NM_025359	ENSMUSG00000020577	Tspan13	1100001I23Rik|NET-6|Tm4sf13	tetraspanin 13	protein-coding	0.110000	0.701493	
mm_51478.1	chr6	83015198	83015398	+	1	NA	NA	NA	18173	NM_010070	13448	Mm.156	NM_010070	ENSMUSG00000068335	Dok1	AW557123|p62DOK	docking protein 1	protein-coding	0.025000	0.502488	
mm_164497.1	chr16	91355253	91355453	-	1	NA	NA	NA	-17430	NM_010509	15976	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.040000	0.567164	
mm_87515.1	chr10	52690425	52690625	+	1	NA	NA	NA	24	NM_178675	215085	Mm.338690	NM_178675	ENSMUSG00000038602	Slc35f1	Duf6|E130016L02	solute carrier family 35, member F1	protein-coding	0.080000	0.681592	
mm_160998.1	chr11	115091335	115091535	+	1	NA	NA	NA	4	NM_001163753	58222	Mm.143789	NM_021411	ENSMUSG00000020732	Rab37	B230331O03Rik|B230354I04Rik	RAB37, member RAS oncogene family	protein-coding	0.080000	0.587065	
mm_62936.1	chr7	118740639	118740839	+	1	NA	NA	NA	468	NM_027815	71517	Mm.213298	NM_027815	ENSMUSG00000030982	9030624J02Rik	2610029J22Rik	RIKEN cDNA 9030624J02 gene	protein-coding	0.050000	0.606965	
mm_91770.1	chr10	51590352	51590552	-	1	NA	NA	NA	8	NM_029894	77296	Mm.30588	NM_029894	ENSMUSG00000019909	Fam162b	9430073N08Rik	family with sequence similarity 162, member B	protein-coding	0.045000	0.606965	
mm_36709.1	chr4	97584528	97584728	-	1	NA	NA	NA	-37	NR_015513	319865	Mm.373807	NM_177023		E130114P18Rik	-	RIKEN cDNA E130114P18 gene	ncRNA	0.030000	0.492537	
mm_130707.1	chr15	100720125	100720325	-	1	NA	NA	NA	252	NM_001161768	207839	Mm.22969	NM_172451	ENSMUSG00000037280	Galnt6	4632410F13|AW047994|GalNAc-T6	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6	protein-coding	0.030000	0.517413	
mm_11219.1	chr2	29699698	29699898	+	1	NA	NA	NA	-61730	NM_001177392	433416	Mm.330112	NM_001034887	ENSMUSG00000075425	Gm13547	OTTMUSG00000012686	predicted gene 13547	protein-coding	0.020000	0.507463	
mm_64582.1	chr7	145300719	145300919	+	1	NA	NA	NA	-90	NM_145379	211577	Mm.215151	NM_145379	ENSMUSG00000031070	Mrgprf	BC019711|Mgrc|MrgF	MAS-related GPR, member F	protein-coding	0.020000	0.601990	
mm_102136.1	chr11	53479917	53480117	-	1	NA	NA	NA	178	NM_183173	237761	Mm.145208	NM_183173	ENSMUSG00000044352	Sowaha	A830006N08Rik|Ankrd43	sosondowah ankyrin repeat domain family member A	protein-coding	0.070000	0.686567	
mm_104381.1	chr11	94473961	94474161	-	1	NA	NA	NA	137	NM_001177888	12291	Mm.29585	NM_009783	ENSMUSG00000020866	Cacna1g	Cav3.1d|[a]1G|a1G|alpha-1G|mKIAA1123	calcium channel, voltage-dependent, T type, alpha 1G subunit	protein-coding	0.060000	0.711443	
mm_104775.1	chr11	98545866	98546066	-	1	NA	NA	NA	65	NM_011771	22780	Mm.133367	NM_011771	ENSMUSG00000018168	Ikzf3	5830411O07Rik|Aiolos|Zfpn1a3|Znfn1a3	IKAROS family zinc finger 3	protein-coding	0.135000	0.671642	3(GTGCTTTAAAGC,-,0.00),5(GCTTTAAAGCGG,+,0.00)
mm_69089.1	chr7	127017179	127017379	-	1	NA	NA	NA	73	NM_030240	67278	Mm.345385	NM_030240	ENSMUSG00000030680	Pagr1a	2900092E17Rik|C77040|PA1|PAGR1	PAXIP1 associated glutamate rich protein 1A	protein-coding	0.080000	0.562189	42(CGGTCTAAAAAG,-,0.00)
mm_106110.1	chr11	116329334	116329534	-	1	NA	NA	NA	5920	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.025000	0.537313	
mm_77335.1	chr8	119558587	119558787	-	1	NA	NA	NA	74	NM_001167910	56453	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	0.160000	0.731343	
mm_88616.1	chr10	79840795	79840995	+	1	NA	NA	NA	-13537	NM_001077363	19205	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0.025000	0.547264	
mm_76940.1	chr8	105941573	105941773	-	1	NA	NA	NA	1729	NM_008490	16816	Mm.1593	NM_008490	ENSMUSG00000035237	Lcat	AI046659|D8Wsu61e	lecithin cholesterol acyltransferase	protein-coding	0.025000	0.577114	
mm_121511.1	chr14	121963729	121963929	+	1	NA	NA	NA	1364	NM_183031	321019	Mm.265618	NM_183031	ENSMUSG00000051212	Gpr183	Ebi2	G protein-coupled receptor 183	protein-coding	0.020000	0.467662	-35(GCTTATAAAAGG,+,0.00),-35(GCTTATAAAAGG,-,0.00)
mm_138123.1	chr17	34153058	34153258	+	1	NA	NA	NA	-33	NM_010387	14999	Mm.460938	NM_010387	ENSMUSG00000079547	H2-DMb1	AI385589|H-2Mb1|H2-Mb1	histocompatibility 2, class II, locus Mb1	protein-coding	0.010000	0.492537	
mm_116580.1	chr13	47105733	47105933	-	1	NA	NA	NA	388	NM_025900	110052	Mm.131150	NM_025900	ENSMUSG00000021377	Dek	1810019E15Rik|D13H6S231E	DEK oncogene (DNA binding)	protein-coding	0.145000	0.771144	
mm_151450.1	chr19	57691269	57691469	+	1	NA	NA	NA	80335	NM_181415	226255	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0.015000	0.467662	-34(AGCCATAAAAAC,-,0.00)
mm_38315.1	chr4	137249018	137249218	-	1	NA	NA	NA	-28517	NM_009523	22417	Mm.20355	NM_009523	ENSMUSG00000036856	Wnt4	Wnt-4	wingless-type MMTV integration site family, member 4	protein-coding	0.010000	0.562189	
mm_127239.1	chr15	99582763	99582963	+	1	NA	NA	NA	3807	NM_009699	11827	Mm.20206	NM_009699	ENSMUSG00000023013	Aqp2	AQP-CD|WCH-CD|cph|jpk	aquaporin 2	protein-coding	0.000000	0.427861	
mm_163061.1	chr11	65032134	65032334	+	1	NA	NA	NA	53199	NM_023479	68626	Mm.157711	NM_023479	ENSMUSG00000020549	Elac2	1110017O07Rik|D11Wsu80e|Hpc2	elaC ribonuclease Z 2	protein-coding	0.025000	0.557214	
mm_137327.1	chr17	25016443	25016643	+	1	NA	NA	NA	457	NM_134126	106633	Mm.32802	NM_134126	ENSMUSG00000024169	Ift140	AI661311|Tce5|Wdtc2|mKIAA0590	intraflagellar transport 140	protein-coding	0.100000	0.621891	
mm_99936.1	chr11	111026804	111027004	+	1	NA	NA	NA	3044	NM_001252208	16517	Mm.30176	NM_010604	ENSMUSG00000051497	Kcnj16	6430410F18Rik|AI132396|Kir5.1	potassium inwardly-rectifying channel, subfamily J, member 16	protein-coding	0.010000	0.393035	-17(AGCTTTATAAAC,-,0.00),-15(CTTTATAAACTG,+,0.00)
mm_80419.1	chr9	77838793	77838993	+	1	NA	NA	NA	-78472	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.010000	0.537313	
mm_58470.1	chr7	3390568	3390768	+	1	NA	NA	NA	-3374	NM_133190	81905	Mm.357990	NM_133190	ENSMUSG00000053395	Cacng8	-	calcium channel, voltage-dependent, gamma subunit 8	protein-coding	0.005000	0.527363	
mm_25986.1	chr3	133534308	133534508	+	1	NA	NA	NA	9982	NM_001346736	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.005000	0.442786	59(GGCCATAAAAAT,-,0.00)
mm_54783.1	chr6	41544263	41544463	-	1	NA	NA	NA	22587	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.015000	0.427861	
mm_128170.1	chr15	34269763	34269963	-	1	NA	NA	NA	31837	NM_033521	114128	Mm.197518	NM_033521	ENSMUSG00000022257	Laptm4b	C330023P13Rik|LAPTM4beta	lysosomal-associated protein transmembrane 4B	protein-coding	0.020000	0.472637	-31(GGCTATAAAAAA,-,0.00)
mm_148060.1	chr18	72166157	72166357	-	1	NA	NA	NA	184812	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.000000	0.368159	55(GCTTTTAAAATC,+,0.00),56(CTTTTAAAATCC,+,0.00)
mm_49322.1	chr6	18866249	18866449	+	1	NA	NA	NA	31	NM_001167757	75196	Mm.67665	NM_029202	ENSMUSG00000029517	Ankrd7	4930532L20Rik|AV278427	ankyrin repeat domain 7	protein-coding	0.025000	0.512438	
mm_147022.1	chr18	34624733	34624933	-	1	NA	NA	NA	30	NM_030147	78656	Mm.45602	NM_030147	ENSMUSG00000003778	Brd8	2610007E11Rik|4432404P07Rik|SMAP	bromodomain containing 8	protein-coding	0.040000	0.492537	
mm_147584.1	chr18	56504344	56504544	-	1	NA	NA	NA	-33695	NR_106160	102465790		NR_106160	ENSMUSG00000099196	Mir1258	Gm27371|mmu-mir-1258	microRNA 1258	ncRNA	0.015000	0.512438	
mm_156411.1	chrX	140664443	140664643	+	1	NA	NA	NA	-13485	NM_011845	23947	Mm.131097	NM_011845	ENSMUSG00000000266	Mid2	FXY2|Trim1	midline 2	protein-coding	0.045000	0.577114	
mm_112042.1	chr12	111671227	111671427	-	1	NA	NA	NA	1011	NM_021273	12709	Mm.16831	NM_021273	ENSMUSG00000001270	Ckb	B-CK|Bck|Ck-3|Ck3|Ckbb	creatine kinase, brain	protein-coding	0.100000	0.691542	
mm_157616.1	chrX	55895751	55895951	-	1	NA	NA	NA	-240721	NM_027510	70691	Mm.335676	NM_027510	ENSMUSG00000031125	3830403N18Rik	Xlrl	RIKEN cDNA 3830403N18 gene	protein-coding	0.005000	0.532338	30(GCTTTAAGGGGA,+,0.00)
mm_80802.1	chr9	96259174	96259374	+	1	NA	NA	NA	26	NM_001184710	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.015000	0.432836	
mm_135281.1	chr16	38447444	38447644	-	1	NA	NA	NA	5145	NM_007414	11544	Mm.20047	NM_007414	ENSMUSG00000002844	Adprh	Arh1	ADP-ribosylarginine hydrolase	protein-coding	0.050000	0.626866	
mm_92249.1	chr10	70559322	70559522	-	1	NA	NA	NA	33390	NM_001162846	70911	Mm.19825	NM_178621	ENSMUSG00000037747	Phyhipl	4921522K17Rik|AI267048	phytanoyl-CoA hydroxylase interacting protein-like	protein-coding	0.015000	0.482587	
mm_98209.1	chr11	87797463	87797663	+	1	NA	NA	NA	3779	NM_010824	17523	Mm.4668	NM_010824	ENSMUSG00000009350	Mpo	mKIAA4033	myeloperoxidase	protein-coding	0.045000	0.606965	
mm_151148.1	chr19	53140417	53140617	+	1	NA	NA	NA	74	NM_001164101	27360	Mm.426080	NM_013758	ENSMUSG00000025026	Add3	AI463285|R75380	adducin 3 (gamma)	protein-coding	0.045000	0.572139	-31(CCTTTAAGAGAG,+,0.00)
mm_59526.1	chr7	27619253	27619453	+	1	NA	NA	NA	12017	NM_001331109	11652	Mm.177194	NM_007434	ENSMUSG00000004056	Akt2	2410016A19Rik|AW554154|PKB|PKBbeta	thymoma viral proto-oncogene 2	protein-coding	0.000000	0.398010	1(ATGTATATAAGC,-,0.00)
mm_150599.1	chr19	40737174	40737374	+	1	NA	NA	NA	77504	NM_009848	12495	Mm.2824	NM_009848	ENSMUSG00000048120	Entpd1	2610206B08Rik|AA408691|Cd39|NTPDase-1	ectonucleoside triphosphate diphosphohydrolase 1	protein-coding	0.015000	0.547264	
mm_70589.1	chr8	13173544	13173744	+	1	NA	NA	NA	14483	NM_010684	16783	Mm.16716	NM_010684	ENSMUSG00000031447	Lamp1	CD107a|LGP-120|LGP-A|Lamp-1|P2B	lysosomal-associated membrane protein 1	protein-coding	0.015000	0.502488	
mm_40369.1	chr5	51040002	51040202	+	1	NA	NA	NA	513819	NR_027710	19017	Mm.259072	NM_008904	ENSMUSG00000029167	Ppargc1a	A830037N07Rik|ENSMUSG00000079510|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	protein-coding	0.010000	0.417910	
mm_63512.1	chr7	127875650	127875850	+	1	NA	NA	NA	1073	NM_146259	244219	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.105000	0.691542	
mm_120079.1	chr14	57571510	57571710	+	1	NA	NA	NA	-41	NM_026526	68043	Mm.45225	NM_026526	ENSMUSG00000021951	Eef1akmt1	2510005D08Rik|AW045965|Ayu21-96|Gt(pU21)96Imeg|GtAyu21-96|N6amt2	eukaryotic translation elongation factor 1 alpha lysine methyltransferase 1	protein-coding	0.085000	0.641791	
mm_36535.1	chr4	86655411	86655611	-	1	NA	NA	NA	14548	NM_007408	11520	Mm.381	NM_007408	ENSMUSG00000028494	Plin2	AA407157|ADPH|Adfp|Adrp	perilipin 2	protein-coding	0.005000	0.437811	
mm_72895.1	chr8	90828772	90828972	+	1	NA	NA	NA	37	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.075000	0.661692	
mm_133895.1	chr16	97535982	97536182	+	1	NA	NA	NA	1	NR_003508	17858	Mm.14157	NM_013606	ENSMUSG00000023341	Mx2	AI528743|Mx-2	MX dynamin-like GTPase 2	protein-coding	0.010000	0.517413	-33(CACTATTTAAAG,-,0.00),-31(CTATTTAAAGAG,+,0.00)
mm_133784.1	chr16	95257477	95257677	+	1	NA	NA	NA	19	NM_001271690	16516	Mm.272239	NM_019664	ENSMUSG00000062609	Kcnj15	4930414N08Rik|AI182284|AI267127|IRKK|Kir4.2	potassium inwardly-rectifying channel, subfamily J, member 15	protein-coding	0.015000	0.407960	14(ACCTTTAAAAAA,-,0.00),15(CCTTTAAAAAAC,+,0.00)
mm_131178.1	chr16	7080640	7080840	+	1	NA	NA	NA	10905	NM_183188	268859	Mm.370334	NM_021477	ENSMUSG00000008658	Rbfox1	A2bp|A2bp1|Hrnbp1|fox-1	RNA binding protein, fox-1 homolog (C. elegans) 1	protein-coding	0.010000	0.393035	
mm_81979.1	chr9	121314199	121314399	+	1	NA	NA	NA	-37127	NM_177589	209012	Mm.371804	NM_177589	ENSMUSG00000040936	Ulk4	4932415A06Rik|A730098P15	unc-51-like kinase 4	protein-coding	0.050000	0.577114	
mm_118740.1	chr14	22310858	22311058	+	1	NA	NA	NA	231840	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.000000	0.422886	
mm_169806.1	chr16	18533151	18533351	-	1	NA	NA	NA	34380	NR_104347	13972	Mm.236139	NM_023120	ENSMUSG00000000884	Gnb1l	ESTM55|Gm16314|Me49f07|OTTMUSG00000033458|Wdr14|Wdvcf	guanine nucleotide binding protein (G protein), beta polypeptide 1-like	protein-coding	0.030000	0.393035	
mm_110731.1	chr12	69769205	69769405	-	1	NA	NA	NA	-5361	NR_030450	751538		NR_030450	ENSMUSG00000076065	Mir681	Mirn681|mmu-mir-681	microRNA 681	ncRNA	0.010000	0.432836	
mm_148973.1	chr19	7557385	7557585	+	1	NA	NA	NA	26	NM_139269	225845	Mm.274810	NM_139269	ENSMUSG00000060675	Pla2g16	C78643|HRSL3|Hrasls3|Hrev107|MLP-3	phospholipase A2, group XVI	protein-coding	0.040000	0.592040	
mm_92503.1	chr10	78352291	78352491	-	1	NA	NA	NA	-691	NM_053014	28169	Mm.141230	NM_053014	ENSMUSG00000001211	Agpat3	AW061257|AW493985|D10Jhu12e|lpaat3	1-acylglycerol-3-phosphate O-acyltransferase 3	protein-coding	0.210000	0.825871	
mm_23893.1	chr3	83031497	83031697	+	1	NA	NA	NA	5444	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.045000	0.502488	
mm_162581.1	chr1	178337489	178337689	-	1	NA	NA	NA	195	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.080000	0.656716	
mm_145167.1	chr18	46742769	46742969	+	1	NA	NA	NA	993	NM_001303015	11777	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	0.020000	0.383085	
mm_8846.1	chr1	162705454	162705654	-	1	NA	NA	NA	35002	NM_001081290	226562	Mm.245446	NM_001081290	ENSMUSG00000040225	Prrc2c	1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096	proline-rich coiled-coil 2C	protein-coding	0.025000	0.497512	33(GCTCTTATGGGG,+,0.00)
mm_136938.1	chr17	14249720	14249920	+	1	NA	NA	NA	-29686	NM_022315	64074	Mm.30162	NM_022315	ENSMUSG00000023886	Smoc2	1700056C05Rik|5430426J21Rik|Smoc2l	SPARC related modular calcium binding 2	protein-coding	0.010000	0.557214	
mm_158539.1	chrX	143933048	143933248	-	1	NA	NA	NA	-24	NM_001110222	13193	Mm.12871	NM_010025	ENSMUSG00000031285	Dcx	Dbct	doublecortin	protein-coding	0.015000	0.507463	
mm_163598.1	chr13	43266328	43266528	-	1	NA	NA	NA	37744	NM_001033399	328232	Mm.441399	NM_001033399	ENSMUSG00000051335	Gfod1	9630032O13|AI850995	glucose-fructose oxidoreductase domain containing 1	protein-coding	0.020000	0.497512	
mm_75336.1	chr8	43305804	43306004	-	1	NA	NA	NA	1105	NM_009556	22702	Mm.285848	NM_009556	ENSMUSG00000051176	Zfp42	Rex-1|Rex1|Zfp-42	zinc finger protein 42	protein-coding	0.050000	0.522388	
mm_8115.1	chr1	135919248	135919448	-	1	NA	NA	NA	-141	NM_019645	18772	Mm.4494	NM_019645	ENSMUSG00000026413	Pkp1	-	plakophilin 1	protein-coding	0.065000	0.701493	
mm_85107.1	chr9	95404425	95404625	-	1	NA	NA	NA	2745	NM_018763	54371	Mm.212446	NM_018763	ENSMUSG00000033350	Chst2	AI428561|AW121776|C130041E03Rik|Chts2|GST-2|GlcNAc6ST|Gn6st	carbohydrate sulfotransferase 2	protein-coding	0.010000	0.452736	
mm_6007.1	chr1	58973331	58973531	-	1	NA	NA	NA	51	NM_172406	70827	Mm.222887	NM_172406	ENSMUSG00000026028	Trak2	2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549	trafficking protein, kinesin binding 2	protein-coding	0.060000	0.626866	
mm_50821.1	chr6	54456105	54456305	+	1	NA	NA	NA	3322	NM_001167861	330319	Mm.434326	NM_001167860	ENSMUSG00000086040	Wipf3	9030621G03|BQ952480	WAS/WASL interacting protein family, member 3	protein-coding	0.010000	0.492537	
mm_91293.1	chr10	24915477	24915677	-	1	NA	NA	NA	4913	NR_105870	102465545		NR_105870	ENSMUSG00000099181	Mir6905	Gm27879|mmu-mir-6905	microRNA 6905	ncRNA	0.020000	0.442786	
mm_38641.1	chr4	143162056	143162256	-	1	NA	NA	NA	-25994	NR_105988	102465618		NR_105988	ENSMUSG00000106597	Mir7021	mmu-mir-7021	microRNA 7021	ncRNA	0.085000	0.631841	
mm_49818.1	chr6	37442413	37442613	+	1	NA	NA	NA	-365	NM_178661	208647	Mm.169929	NM_178661	ENSMUSG00000038648	Creb3l2	BBF2H7|C530025K05Rik|SCIRR69	cAMP responsive element binding protein 3-like 2	protein-coding	0.045000	0.447761	
mm_63774.1	chr7	131548658	131548858	+	1	NA	NA	NA	-5304	NM_145998	15372	Mm.303357	NM_145998	ENSMUSG00000050100	Hmx2	Nkx-5.2|Nkx5-2	H6 homeobox 2	protein-coding	0.010000	0.477612	
mm_1796.1	chr1	79855871	79856071	+	1	NA	NA	NA	2694	NM_009255	20720	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	0.015000	0.477612	
mm_31009.1	chr4	40269479	40269679	+	1	NA	NA	NA	0	NR_045265	100504309	Mm.392019	NR_045265		Toporsos	2010003O02Rik	topoisomerase I binding, arginine/serine-rich, opposite strand	ncRNA	0.080000	0.626866	
mm_71804.1	chr8	68368365	68368565	+	1	NA	NA	NA	6	NR_038181	73609	Mm.443247	NR_038181	ENSMUSG00000085197	1700125H03Rik	4930510D22Rik	RIKEN cDNA 1700125H03 gene	ncRNA	0.015000	0.542289	
mm_68956.1	chr7	126566017	126566217	-	1	NA	NA	NA	249	NM_146200	56347	Mm.22776	NM_146200	ENSMUSG00000030738	Eif3c	110kDa|3230401O13Rik|Eif3s8|NIPIL(A3)|NipilA3|Xs|Xsl	eukaryotic translation initiation factor 3, subunit C	protein-coding	0.130000	0.706468	
mm_27246.1	chr3	36613284	36613484	-	1	NA	NA	NA	5	NM_027810	71492	Mm.286187	NM_027810	ENSMUSG00000037325	Bbs7	8430406N16Rik	Bardet-Biedl syndrome 7 (human)	protein-coding	0.095000	0.701493	
mm_4680.1	chr1	180568837	180569037	+	1	NA	NA	NA	-38	NM_007415	11545	Mm.277779	NM_007415	ENSMUSG00000026496	Parp1	5830444G22Rik|AI893648|ARTD1|Adprp|Adprt1|C80510|PARP|PPOL|parp-1|sPARP-1	poly (ADP-ribose) polymerase family, member 1	protein-coding	0.120000	0.696517	
mm_97306.1	chr11	76679672	76679872	+	1	NA	NA	NA	-101	NM_177709	237858	Mm.127006	NM_177709	ENSMUSG00000046275	Tusc5	C130069F04Rik|DSPB1|Lost1	tumor suppressor candidate 5	protein-coding	0.020000	0.542289	
mm_19982.1	chr2	118538893	118539093	-	1	NA	NA	NA	5594	NR_138603	171543	Mm.210125	NM_138313	ENSMUSG00000040093	Bmf	AW260063|AW411872	BCL2 modifying factor	protein-coding	0.005000	0.333333	-41(TTCTCTAAAAGG,-,0.00)
mm_23891.1	chr3	83031344	83031544	+	1	NA	NA	NA	5291	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.010000	0.492537	
mm_45399.1	chr5	66151590	66151790	-	1	NA	NA	NA	264	NM_001127382	245945	Mm.36863	NM_139065	ENSMUSG00000070780	Rbm47	9530077J19Rik	RNA binding motif protein 47	protein-coding	0.025000	0.547264	
mm_8406.1	chr1	151754911	151755111	-	1	NA	NA	NA	-363	NM_001311165	66967	Mm.337691	NM_001039644	ENSMUSG00000043019	Edem3	2310050N11Rik	ER degradation enhancer, mannosidase alpha-like 3	protein-coding	0.060000	0.582090	
mm_8709.1	chr1	158968380	158968580	-	1	NA	NA	NA	-11042	NM_001085376	23850	Mm.458621	NM_001085376	ENSMUSG00000073530	Pappa2	PAPP-A2|PLAC3|Pappe	pappalysin 2	protein-coding	0.010000	0.288557	
mm_150020.1	chr19	29370258	29370458	+	1	NA	NA	NA	2920	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.020000	0.398010	
mm_154276.1	chr19	60790467	60790667	-	1	NA	NA	NA	126	NM_010123	13669	Mm.2238	NM_010123	ENSMUSG00000024991	Eif3a	A830012B05Rik|Csma|Eif3|Eif3s10|mKIAA0139	eukaryotic translation initiation factor 3, subunit A	protein-coding	0.105000	0.651741	
mm_73725.1	chr8	112569952	112570152	+	1	NA	NA	NA	9	NM_130457	170571	Mm.209232	NM_130457	ENSMUSG00000031772	Cntnap4	Caspr4|E130114F09Rik	contactin associated protein-like 4	protein-coding	0.030000	0.552239	
mm_98264.1	chr11	88970157	88970357	+	1	NA	NA	NA	-2381	NR_003492	72381	Mm.288885	NR_003492	ENSMUSG00000081766	2210409E12Rik	AU021711|C76890|OTTMUSG00000001303	transcription elongation factor B (SIII), polypeptide 2 pseudogene	pseudo	0.000000	0.497512	-36(GGGTATTTAAGA,-,0.00)
mm_141865.1	chr17	34804457	34804657	-	1	NA	NA	NA	-131	NM_009995	13079	Mm.440407	NM_009995	ENSMUSG00000024365	Cyp21a1	21-OH|21OH|21OHA|21OHB|CYP21OH-A|Cyp21|Cyp21-ps1|Cyp21B|Cyp21a2-ps|Cyp21a2ps|Oh21-1|Oh21-2	cytochrome P450, family 21, subfamily a, polypeptide 1	protein-coding	0.005000	0.482587	
mm_42129.1	chr5	110978566	110978766	+	1	NA	NA	NA	-25478	NR_030482	735278		NR_030482	ENSMUSG00000076163	Mir701	Mirn701|mir-701|mmu-mir-701	microRNA 701	ncRNA	0.015000	0.472637	
mm_10475.1	chr2	14388305	14388505	+	1	NA	NA	NA	7	NM_001012305	277468	Mm.44662	NM_001012305	ENSMUSG00000036949	Slc39a12	AW046938|Gm731	solute carrier family 39 (zinc transporter), member 12	protein-coding	0.010000	0.432836	
mm_172052.1	chr6	128764123	128764323	-	1	NA	NA	NA	24418	NM_008527	17059	Mm.480764	NM_008527	ENSMUSG00000030325	Klrb1c	AI462337|CD161|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1c|ly-55c	killer cell lectin-like receptor subfamily B member 1C	protein-coding	0.045000	0.517413	
mm_128642.1	chr15	59374039	59374239	-	1	NA	NA	NA	13	NM_153548	223593	Mm.218665	NM_153548	ENSMUSG00000022350	Washc5	AL022848|C76463|E430025E21Rik|Kiaa0196|mKIAA0196|strumpellin	WASH complex subunit 5	protein-coding	0.115000	0.736318	
mm_68256.1	chr7	105581506	105581706	-	1	NA	NA	NA	47	NM_009685	11785	Mm.38469	NM_009685	ENSMUSG00000037032	Apbb1	Fe65|Rir	amyloid beta (A4) precursor protein-binding, family B, member 1	protein-coding	0.065000	0.611940	
mm_591.1	chr1	39551616	39551816	+	1	NA	NA	NA	-2876	NR_028555	100217461		NR_028555	ENSMUSG00000077704	Snord89	MBII-289	small nucleolar RNA, C/D box 89	snoRNA	0.000000	0.263682	
mm_95530.1	chr11	52232211	52232411	+	1	NA	NA	NA	316	NM_011543	21402	Mm.42944	NM_011543	ENSMUSG00000036309	Skp1a	15kDa|2610043E24Rik|2610206H23Rik|EMC19|OCP-II|OCP2|SKP1|Tceb1l|p19A|p19Skp1	S-phase kinase-associated protein 1A	protein-coding	0.100000	0.691542	
mm_172477.1	chr7	4684571	4684771	-	1	NA	NA	NA	292	NM_024172	66245	Mm.6803	NM_024172	ENSMUSG00000063802	Hspbp1	1500019G21Rik	HSPA (heat shock 70kDa) binding protein, cytoplasmic cochaperone 1	protein-coding	0.010000	0.547264	
mm_10059.1	chr1	193273008	193273208	-	1	NA	NA	NA	80	NM_008059	14373	Mm.439721	NM_008059	ENSMUSG00000009633	G0s2	AI255151|AV006465	G0/G1 switch gene 2	protein-coding	0.045000	0.597015	
mm_84907.1	chr9	79977480	79977680	-	1	NA	NA	NA	302	NM_001081243	70598	Mm.23049	NM_001081243	ENSMUSG00000034898	Filip1	5730485H21Rik|AI843021	filamin A interacting protein 1	protein-coding	0.015000	0.502488	
mm_119441.1	chr14	46760497	46760697	+	1	NA	NA	NA	56	NM_028222	72391	Mm.272394	NM_028222	ENSMUSG00000037628	Cdkn3	2410006H10Rik|KAP	cyclin-dependent kinase inhibitor 3	protein-coding	0.120000	0.686567	
mm_126133.1	chr15	78337153	78337353	+	1	NA	NA	NA	11263	NM_007780	12983	Mm.235324	NM_007780	ENSMUSG00000071713	Csf2rb	AI848964|AIC2B|Bc|CDw131|Csf2rb1|Csfgmrb|Il3r|Il3rb|Il3rb1|Il5rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	protein-coding	0.005000	0.417910	-20(TGGTTTTAAAAG,-,0.00),-18(GTTTTAAAAGTC,+,0.00)
mm_164072.1	chr14	120278908	120279108	-	1	NA	NA	NA	3339	NM_175341	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind-like 2	protein-coding	0.020000	0.577114	
mm_126007.1	chr15	76538885	76539085	+	1	NA	NA	NA	42	NM_029643	52710	Mm.28597	NM_029643	ENSMUSG00000022560	Slc52a2	2010003P03Rik|D15Ertd747e|GPCR42|Gpr172b|PAR2|mRFT1	solute carrier protein 52, member 2	protein-coding	0.075000	0.651741	
mm_36353.1	chr4	74251650	74251850	-	1	NA	NA	NA	-129	NM_144787	76804	Mm.209059	NM_144787	ENSMUSG00000028397	Kdm4c	2410141F18Rik|AA517467|Gasc1|Jmjd2c	lysine (K)-specific demethylase 4C	protein-coding	0.080000	0.587065	
mm_161517.1	chr15	99237964	99238164	+	1	NA	NA	NA	13088	NM_010601	16512	Mm.374793	NM_010601	ENSMUSG00000037579	Kcnh3	AU019351|C030044P22Rik|Elk2|Kv12.2|Melk2	potassium voltage-gated channel, subfamily H (eag-related), member 3	protein-coding	0.035000	0.592040	
mm_50270.1	chr6	45104999	45105199	+	1	NA	NA	NA	45038	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.000000	0.393035	-76(CTGTCTAAAAGA,-,0.00),48(CAATATAAAAGC,-,0.00)
mm_72239.1	chr8	75015001	75015201	+	1	NA	NA	NA	-1121	NM_001316754	70823	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0.005000	0.398010	
mm_95812.1	chr11	55123705	55123905	+	1	NA	NA	NA	25820	NM_010299	14667	Mm.287807	NM_010299	ENSMUSG00000000594	Gm2a	AA408702|AW215435|GM2-AP|SAP-3	GM2 ganglioside activator protein	protein-coding	0.015000	0.353234	
mm_1647.1	chr1	74626217	74626417	+	1	NA	NA	NA	24862	NM_175031	269209	Mm.310974	NM_175031	ENSMUSG00000033276	Stk36	1700112N14Rik|B930045J24|FU|Fused|mKIAA1278	serine/threonine kinase 36	protein-coding	0.015000	0.502488	
mm_76882.1	chr8	105623056	105623256	-	1	NA	NA	NA	7690	NR_035492	100316712		NR_035492	ENSMUSG00000089432	Mir1966	mir-1966|mmu-mir-1966	microRNA 1966	ncRNA	0.005000	0.527363	
mm_117210.1	chr13	64089086	64089286	-	1	NA	NA	NA	15	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.015000	0.572139	
mm_160634.1	chr9	107705396	107705596	-	1	NA	NA	NA	95	NM_001311151	20350	Mm.12903	NM_011349	ENSMUSG00000034684	Sema3f	Sema4|Semak	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F	protein-coding	0.020000	0.616915	
mm_84377.1	chr9	65175175	65175375	-	1	NA	NA	NA	34086	NM_008988	19289	Mm.41529	NM_008988	ENSMUSG00000032394	Igdcc3	2810401C09Rik|AI851425|Punc|WI-14920	immunoglobulin superfamily, DCC subclass, member 3	protein-coding	0.005000	0.512438	
mm_41737.1	chr5	102724856	102725056	+	1	NA	NA	NA	-43854	NM_001286468	231532	Mm.440191	NM_029270	ENSMUSG00000057315	Arhgap24	0610025G21Rik	Rho GTPase activating protein 24	protein-coding	0.015000	0.457711	
mm_132391.1	chr16	35000427	35000627	+	1	NA	NA	NA	-21894	NM_023587	70757	Mm.27286	NM_023587	ENSMUSG00000035376	Hacd2	6330408J20Rik|AI255777|AI481689|Hcad2|Ptplb	3-hydroxyacyl-CoA dehydratase 2	protein-coding	0.015000	0.472637	
mm_169272.1	chr1	38665646	38665846	-	1	NA	NA	NA	-38502	NM_001290814	16764	Mm.336679	NM_010678	ENSMUSG00000037138	Aff3	3222402O04Rik|A730046J16|LAF-4|Laf4	AF4/FMR2 family, member 3	protein-coding	0.005000	0.522388	
mm_139787.1	chr17	65799954	65800154	+	1	NA	NA	NA	16699	NR_104465	70351	Mm.48686	NM_146081	ENSMUSG00000061950	Ppp4r1	3110001J10Rik|Pp4r1	protein phosphatase 4, regulatory subunit 1	protein-coding	0.010000	0.442786	
mm_143051.1	chr17	56935359	56935559	-	1	NA	NA	NA	-71	NM_022328	64144	Mm.148748	NM_022328	ENSMUSG00000024212	Mllt1	AA407901|BAM11|ENL|LTG19	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 1	protein-coding	0.165000	0.805970	
mm_67776.1	chr7	97209940	97210140	-	1	NA	NA	NA	115924	NM_001177412	244144	Mm.297541	NM_001177412	ENSMUSG00000035713	Usp35	Gm1088|Gm493	ubiquitin specific peptidase 35	protein-coding	0.000000	0.343284	
mm_57732.1	chr6	128966827	128967027	-	1	NA	NA	NA	-4233	NM_001168224	70809	Mm.439891	NM_027562	ENSMUSG00000000248	Clec2g	4632413B12Rik|Clr-c|Clr-d|Clrc|Clrd|Clrx|Ddv10|Ocilrp1	C-type lectin domain family 2, member g	protein-coding	0.000000	0.378109	
mm_108013.1	chr12	73591765	73591965	+	1	NA	NA	NA	7069	NM_008856	18755	Mm.341677	NM_008856	ENSMUSG00000021108	Prkch	Pkch	protein kinase C, eta	protein-coding	0.025000	0.587065	
mm_152820.1	chr19	23136166	23136366	-	1	NA	NA	NA	-4960	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971	Kruppel-like factor 9	protein-coding	0.055000	0.592040	
mm_136288.1	chr16	91373005	91373205	-	1	NA	NA	NA	322	NM_001110498	15976	Mm.6834	NM_010509	ENSMUSG00000022971	Ifnar2	AI747302|Ifnar-2	interferon (alpha and beta) receptor 2	protein-coding	0.075000	0.631841	
mm_132900.1	chr16	48871902	48872102	+	1	NA	NA	NA	-606	NM_181596	245195	Mm.231288	NM_181596	ENSMUSG00000022651	Retnlg	Fizz3|Relmg|Xcp1	resistin like gamma	protein-coding	0.000000	0.427861	
mm_96030.1	chr11	59549647	59549847	+	1	NA	NA	NA	7061	NM_145827	216799	Mm.54174	NM_145827	ENSMUSG00000032691	Nlrp3	AGTAVPRL|AII/AVP|Cias1|FCAS|FCU|MWS|Mmig1|NALP3|Pypaf1	NLR family, pyrin domain containing 3	protein-coding	0.015000	0.492537	
mm_104289.1	chr11	90382627	90382827	-	1	NA	NA	NA	8190	NM_172563	217082	Mm.158903	NM_172563	ENSMUSG00000003949	Hlf	E230015K02Rik	hepatic leukemia factor	protein-coding	0.015000	0.452736	
mm_79827.1	chr9	64736260	64736460	+	1	NA	NA	NA	1396	NM_017382	53869	Mm.1387	NM_017382	ENSMUSG00000004771	Rab11a	-	RAB11A, member RAS oncogene family	protein-coding	0.015000	0.452736	-43(CCCCAGAAAAGC,-,0.00),-34(AGCTTTAAAAGC,-,0.00),-33(GCTTTAAAAGCA,+,0.00)
mm_173085.1	chrX	144228377	144228577	-	1	NA	NA	NA	74782	NR_040271	319764	Mm.208482	NR_040271	ENSMUSG00000085139	A730046J19Rik	-	RIKEN cDNA A730046J19 gene	ncRNA	0.030000	0.482587	
mm_140199.1	chr17	83706053	83706253	+	1	NA	NA	NA	-10	NM_001171054	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.175000	0.860697	
mm_33155.1	chr4	125503977	125504177	+	1	NA	NA	NA	-672	NR_109835	735288		NR_109835	ENSMUSG00000094403	Mir692-2	Mir692-2a|Mir692-3|Mirn692-2|Mirn692-2a|mir-692-2|mmu-mir-692-2	microRNA 692-2	ncRNA	0.040000	0.527363	
mm_9727.1	chr1	180195865	180196065	-	1	NA	NA	NA	55	NM_023341	67426	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0.120000	0.686567	
mm_54253.1	chr6	28262348	28262548	-	1	NA	NA	NA	-847	NM_001081678	627049	Mm.84441	NM_001081678	ENSMUSG00000039841	Zfp800	AA407452|Znf800	zinc finger protein 800	protein-coding	0.040000	0.572139	
mm_131195.1	chr16	7828107	7828307	+	1	NA	NA	NA	596929	NM_029070	74720	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding	0.000000	0.517413	
mm_92021.1	chr10	62422270	62422470	-	1	NA	NA	NA	87	NM_145419	216019	Mm.213213	NM_145419	ENSMUSG00000020080	Hkdc1	BC016235	hexokinase domain containing 1	protein-coding	0.040000	0.542289	
mm_153180.1	chr19	34494094	34494294	-	1	NA	NA	NA	-19059	NM_009890	12642	Mm.30824	NM_009890	ENSMUSG00000050370	Ch25h	AI462618|m25OH	cholesterol 25-hydroxylase	protein-coding	0.020000	0.378109	
mm_83430.1	chr9	44987073	44987273	-	1	NA	NA	NA	5387	NM_013487	12500	Mm.4527	NM_013487	ENSMUSG00000032094	Cd3d	T3d	CD3 antigen, delta polypeptide	protein-coding	0.020000	0.492537	
mm_62201.1	chr7	97789412	97789612	+	1	NA	NA	NA	-51265	NM_175105	66333	Mm.29756	NM_175105	ENSMUSG00000042797	Aqp11	1700015P13Rik|AI648923|sjds	aquaporin 11	protein-coding	0.020000	0.383085	60(ATCTTTTAAAGG,-,0.00),61(TCTTTTAAAGGT,+,0.00)
mm_119073.1	chr14	30879222	30879422	+	1	NA	NA	NA	65	NM_181390	66175	Mm.220895	NM_181390	ENSMUSG00000042485	Mustn1	1110028G01Rik|Mustang	musculoskeletal, embryonic nuclear protein 1	protein-coding	0.030000	0.601990	
mm_58527.1	chr7	4147773	4147973	+	1	NA	NA	NA	1999	NM_175529	243813	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.005000	0.432836	
mm_6047.1	chr1	59990882	59991082	-	1	NA	NA	NA	52140	NM_001316694	70375	Mm.17834	NM_027407	ENSMUSG00000026018	Ica1l	1700030B17Rik|Als2cr15	islet cell autoantigen 1-like	protein-coding	0.020000	0.452736	
mm_93150.1	chr10	93025062	93025262	-	1	NA	NA	NA	56434	NM_001347060	380654	Mm.34980	NM_001347060	ENSMUSG00000020014	Cfap54	4930485B16Rik|Gm872	cilia and flagella associated protein 54	protein-coding	0.010000	0.442786	
mm_99076.1	chr11	99388647	99388847	+	1	NA	NA	NA	617	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.035000	0.537313	
mm_38463.1	chr4	140610487	140610687	-	1	NA	NA	NA	38169	NM_001112723	72754	Mm.29329	NM_172415	ENSMUSG00000040964	Arhgef10l	2810441C07Rik	Rho guanine nucleotide exchange factor (GEF) 10-like	protein-coding	0.010000	0.572139	
mm_58356.1	chr6	148048010	148048210	-	1	NA	NA	NA	694	NM_178797	330450	Mm.447274	NM_178797	ENSMUSG00000030303	Far2	A230046P18|AW048109|BC055759|Mlstd1	fatty acyl CoA reductase 2	protein-coding	0.000000	0.537313	
mm_35643.1	chr4	43519952	43520152	-	1	NA	NA	NA	3502	NM_009416	22004	Mm.646	NM_009416	ENSMUSG00000028464	Tpm2	Tpm-2|Trop-2	tropomyosin 2, beta	protein-coding	0.020000	0.502488	
mm_159200.1	chr2	120555219	120555419	-	1	NA	NA	NA	8512	NM_011743	20402	Mm.485295	NM_011743	ENSMUSG00000027288	Zfp106	Cd-1|D2Dcr28|H3a|Sh3bp3|Znf106|sirm	zinc finger protein 106	protein-coding	0.015000	0.393035	
mm_63807.1	chr7	133637572	133637772	+	1	NA	NA	NA	-3	NM_178115	214764	Mm.174044	NM_145995	ENSMUSG00000039990	Edrf1	2700050L05Rik|AU022667|AW558805	erythroid differentiation regulatory factor 1	protein-coding	0.120000	0.681592	
mm_52877.1	chr6	122456764	122456964	+	1	NA	NA	NA	29441	NM_027664	108653	Mm.277939	NM_027664	ENSMUSG00000040649	Rimklb	4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags	ribosomal modification protein rimK-like family member B	protein-coding	0.055000	0.517413	
mm_9433.1	chr1	172506866	172507066	-	1	NA	NA	NA	6720	NM_178598	21346	Mm.271711	NM_178598	ENSMUSG00000026547	Tagln2	2700094C18Rik|SM22beta|Sm22B|Sm22a	transgelin 2	protein-coding	0.000000	0.492537	
mm_98341.1	chr11	93098321	93098521	+	1	NA	NA	NA	-869	NM_028296	72605	Mm.342160	NM_028296	ENSMUSG00000056158	Car10	2700029L05Rik|BB085816|Ca10	carbonic anhydrase 10	protein-coding	0.080000	0.626866	
mm_29296.1	chr3	107895647	107895847	-	1	NA	NA	NA	-107	NM_010360	14866	Mm.282351	NM_010360	ENSMUSG00000004032	Gstm5	-	glutathione S-transferase, mu 5	protein-coding	0.055000	0.592040	
mm_109164.1	chr12	108202151	108202351	+	1	NA	NA	NA	22513	NM_009832	12454	Mm.474441	NM_009832	ENSMUSG00000021258	Ccnk	AW123198|AW413594|CPR4|CycK	cyclin K	protein-coding	0.025000	0.651741	
mm_83993.1	chr9	57443249	57443449	-	1	NA	NA	NA	-3235	NM_176831	66812	Mm.250508	NM_176831	ENSMUSG00000063849	Ppcdc	1810057I13Rik|8430432M10Rik	phosphopantothenoylcysteine decarboxylase	protein-coding	0.005000	0.532338	
mm_111467.1	chr12	98574480	98574680	-	1	NA	NA	NA	132	NM_001316666	72258	Mm.196158	NM_029911	ENSMUSG00000033854	Kcnk10	1700024D23Rik|3010005K24Rik|Trek2	potassium channel, subfamily K, member 10	protein-coding	0.080000	0.621891	
mm_156853.1	chrX	164401174	164401374	+	1	NA	NA	NA	-18513	NM_011081	18700	Mm.3781	NM_011081	ENSMUSG00000031381	Piga	AI194334|Pig-a	phosphatidylinositol glycan anchor biosynthesis, class A	protein-coding	0.000000	0.517413	
mm_29845.1	chr3	129846939	129847139	-	1	NA	NA	NA	10300	NM_007686	12630	Mm.117180	NM_007686	ENSMUSG00000058952	Cfi	-	complement component factor i	protein-coding	0.015000	0.427861	
mm_151905.1	chr19	5799334	5799534	-	1	NA	NA	NA	3238	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.000000	0.323383	21(GTCTTTTAGAGG,-,0.00),22(TCTTTTAGAGGG,+,0.00)
mm_49041.1	chr6	4760006	4760206	+	1	NA	NA	NA	12800	NM_130877	170676	Mm.320575	NM_130877	ENSMUSG00000092035	Peg10	AA407948|Edr|HB-1|MEF3L|Mar2|Mart2|MyEF-3	paternally expressed 10	protein-coding	0.010000	0.353234	
mm_151116.1	chr19	47864475	47864675	+	1	NA	NA	NA	-970	NM_030051	68214	Mm.63791	NM_026619	ENSMUSG00000025069	Gsto2	1700020F09Rik|4930425C18Rik|GSTO 2-2	glutathione S-transferase omega 2	protein-coding	0.005000	0.462687	
mm_76568.1	chr8	88654100	88654300	-	1	NA	NA	NA	6853	NM_145857	257632	Mm.222633	NM_145857	ENSMUSG00000055994	Nod2	ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2	nucleotide-binding oligomerization domain containing 2	protein-coding	0.000000	0.452736	
mm_68139.1	chr7	102239751	102239951	-	1	NA	NA	NA	10267	NM_019566	56212	Mm.259795	NM_019566	ENSMUSG00000073982	Rhog	2810426G09Rik|Arhg|Sid10750	ras homolog family member G	protein-coding	0.040000	0.616915	
mm_89655.1	chr10	97482267	97482467	+	1	NA	NA	NA	36	NM_007833	13179	Mm.56769	NM_007833	ENSMUSG00000019929	Dcn	DC|DSPG2|PG40|PGII|PGS2|SLRR1B	decorin	protein-coding	0.020000	0.417910	
mm_101932.1	chr11	50205990	50206190	-	1	NA	NA	NA	4730	NM_001290769	18412	Mm.40828	NM_011018	ENSMUSG00000015837	Sqstm1	A170|OSF-6|Osi|STAP|STONE14|p62	sequestosome 1	protein-coding	0.000000	0.497512	
mm_52533.1	chr6	115853473	115853673	+	1	NA	NA	NA	45	NM_031177	81896	Mm.333335	NM_031177	ENSMUSG00000030323	Ift122	C86139|Wdr10|sopb	intraflagellar transport 122	protein-coding	0.085000	0.611940	
mm_38128.1	chr4	134563383	134563583	-	1	NA	NA	NA	4368	NR_105829	102465216		NR_105829	ENSMUSG00000099289	Mir6403	Gm27992|mmu-mir-6403	microRNA 6403	ncRNA	0.030000	0.537313	
mm_80760.1	chr9	95559034	95559234	+	1	NA	NA	NA	-683	NM_198414	75552	Mm.151485	NM_198414	ENSMUSG00000064225	Paqr9	1700020G04Rik	progestin and adipoQ receptor family member IX	protein-coding	0.040000	0.542289	
mm_108798.1	chr12	91588457	91588657	+	1	NA	NA	NA	1092	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.065000	0.527363	-81(CTCTATATAAAC,-,0.00)
mm_149254.1	chr19	10403889	10404089	+	1	NA	NA	NA	14899	NM_173068	54525	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0.010000	0.512438	
mm_9675.1	chr1	178331102	178331302	-	1	NA	NA	NA	6582	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.010000	0.462687	
mm_31153.1	chr4	43414627	43414827	+	1	NA	NA	NA	8225	NM_199057	100213	Mm.235730	NM_199057	ENSMUSG00000035969	Rusc2	AI840675|mKIAA0375	RUN and SH3 domain containing 2	protein-coding	0.025000	0.582090	
mm_171879.1	chr5	32617305	32617505	+	1	NA	NA	NA	6234	NM_009535	22612	Mm.4558	NM_009535	ENSMUSG00000014932	Yes1	Yes|p61-Yes	YES proto-oncogene 1, Src family tyrosine kinase	protein-coding	0.010000	0.462687	
mm_171887.1	chr5	36695840	36696040	-	1	NA	NA	NA	81	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.145000	0.786070	
mm_8504.1	chr1	154116082	154116282	-	1	NA	NA	NA	-85005	NM_001204908	100503355	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	ENSMUSG00000066797|Gm10178|Gm203	zinc finger protein 648	protein-coding	0.010000	0.462687	83(ACTTTTAAGGAG,+,0.00)
mm_68298.1	chr7	105743836	105744036	-	1	NA	NA	NA	402	NM_020024	24075	Mm.274846	NM_020024	ENSMUSG00000043866	Taf10	30kDa|AU041226|TAFII30|Taf2h	TATA-box binding protein associated factor 10	protein-coding	0.075000	0.626866	
mm_6834.1	chr1	84225585	84225785	-	1	NA	NA	NA	-6724	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.427861	
mm_75172.1	chr8	36732726	36732926	-	1	NA	NA	NA	228	NM_001194941	50768	Mm.125155	NM_015802	ENSMUSG00000031523	Dlc1	A730069N07Rik|Arhgap7|HP|STARD12|dlc-1	deleted in liver cancer 1	protein-coding	0.135000	0.736318	
mm_57169.1	chr6	122820516	122820716	-	1	NA	NA	NA	432	NM_021899	60611	Mm.87142	NM_021899	ENSMUSG00000003154	Foxj2	Fhx	forkhead box J2	protein-coding	0.015000	0.606965	
mm_155571.1	chrX	77510818	77511018	+	1	NA	NA	NA	-309	NM_020601	21372	Mm.258476	NM_020601	ENSMUSG00000025246	Tbl1x	5330429M20|Tbl1	transducin (beta)-like 1 X-linked	protein-coding	0.100000	0.746269	
mm_163097.1	chr11	69735123	69735323	-	1	NA	NA	NA	23410	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.010000	0.527363	
mm_12365.1	chr2	69789598	69789798	+	1	NA	NA	NA	-39	NM_028521	73373	Mm.9621	NM_028521	ENSMUSG00000027088	Phospho2	1700048E23Rik|AI661517|AU021728|AV006103|Phos2	phosphatase, orphan 2	protein-coding	0.110000	0.711443	
mm_157312.1	chrX	20961878	20962078	-	1	NA	NA	NA	0	NM_013840	22294	Mm.34779	NM_013840	ENSMUSG00000001134	Uxt	0910002B17Rik	ubiquitously expressed transcript	protein-coding	0.090000	0.587065	
mm_100222.1	chr11	117109816	117110016	+	1	NA	NA	NA	-5256	NR_029459	74136	Mm.272312	NM_028777	ENSMUSG00000020823	Sec14l1	1200017E04Rik|2810012L19Rik|Naa-35	SEC14-like lipid binding 1	protein-coding	0.005000	0.472637	
mm_165242.1	chr2	64191443	64191643	+	1	NA	NA	NA	-93505	NM_001267847	60344	Mm.130769	NM_021716	ENSMUSG00000075324	Fign	fi|fidget	fidgetin	protein-coding	0.010000	0.422886	
mm_37671.1	chr4	129121491	129121691	-	1	NA	NA	NA	156	NM_001130419	15444	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	0.055000	0.656716	
mm_20576.1	chr2	131086679	131086879	-	1	NA	NA	NA	-14	NM_011426	20612	Mm.1374	NM_011426	ENSMUSG00000027322	Siglec1	Cd169|Siglec-1|Sn	sialic acid binding Ig-like lectin 1, sialoadhesin	protein-coding	0.000000	0.462687	
mm_95848.1	chr11	57708887	57709087	+	1	NA	NA	NA	63545	NM_134189	171212	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	0.020000	0.512438	
mm_153568.1	chr19	42599955	42600155	-	1	NA	NA	NA	12751	NM_001164311	67573	Mm.178767	NM_053083	ENSMUSG00000025185	Loxl4	4833426I20Rik|Loxc	lysyl oxidase-like 4	protein-coding	0.055000	0.606965	
mm_59101.1	chr7	19697469	19697669	+	1	NA	NA	NA	829	NM_001305819	11816	Mm.305152	NM_009696	ENSMUSG00000002985	Apoe	AI255918|Apo-E	apolipoprotein E	protein-coding	0.035000	0.582090	
mm_18803.1	chr2	73892527	73892727	-	1	NA	NA	NA	12	NM_001284371	11909	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0.085000	0.636816	45(GGCCTTTAAAGT,-,0.00),46(GCCTTTAAAGTG,+,0.00),47(CCTTTAAAGTGC,+,0.00)
mm_107988.1	chr12	73123635	73123835	+	1	NA	NA	NA	18	NM_008612	17420	Mm.246750	NM_008612	ENSMUSG00000021103	Mnat1	E130115E11Rik|MAT1|P36	menage a trois 1	protein-coding	0.065000	0.547264	
mm_61416.1	chr7	73595478	73595678	+	1	NA	NA	NA	-37183	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.015000	0.442786	-33(TAGTATAAAAGC,-,0.00)
mm_9322.1	chr1	171652828	171653028	-	1	NA	NA	NA	109	NM_144539	75345	Mm.164642	NM_144539	ENSMUSG00000038179	Slamf7	19A|19A24|4930560D03Rik|CRACC|CS1	SLAM family member 7	protein-coding	0.015000	0.507463	
mm_18932.1	chr2	76748851	76749051	-	1	NA	NA	NA	73636	NM_031256	83435	Mm.41636	NM_031256	ENSMUSG00000002733	Plekha3	FAPP1	pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 3	protein-coding	0.040000	0.537313	
mm_67369.1	chr7	79840888	79841088	-	1	NA	NA	NA	1364	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.020000	0.542289	
mm_20729.1	chr2	136891059	136891259	-	1	NA	NA	NA	-59	NM_028201	74243	Mm.330612	NM_028201	ENSMUSG00000027281	Slx4ip	2210009G21Rik|2410004I22Rik|C85661|Slxip	SLX4 interacting protein	protein-coding	0.080000	0.636816	
mm_92079.1	chr10	62753261	62753461	-	1	NA	NA	NA	12245	NR_028557	100217463		NR_028557		Snord98	MBII-419	small nucleolar RNA, C/D box 98	snoRNA	0.005000	0.313433	-62(CTTTTTATAGGT,+,0.00)
mm_156593.1	chrX	152221579	152221779	+	1	NA	NA	NA	-11548	NM_013668	20591	Mm.142655	NM_013668	ENSMUSG00000025332	Kdm5c	D930009K15Rik|Jarid1c|Smcx|mKIAA0234	lysine (K)-specific demethylase 5C	protein-coding	0.030000	0.542289	
mm_170528.1	chr1	93421572	93421772	+	1	NA	NA	NA	24029	NM_001301364	110611	Mm.30012	NM_133808	ENSMUSG00000034088	Hdlbp	1110005P14Rik|AA960365|AI118566|D1Ertd101e	high density lipoprotein (HDL) binding protein	protein-coding	0.035000	0.492537	
mm_87553.1	chr10	54117964	54118164	+	1	NA	NA	NA	42142	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.010000	0.507463	
mm_133102.1	chr16	65198772	65198972	+	1	NA	NA	NA	-93088	NM_008310	15557	Mm.5040	NM_008310	ENSMUSG00000050783	Htr1f	Htr1eb	5-hydroxytryptamine (serotonin) receptor 1F	protein-coding	0.005000	0.447761	
mm_83754.1	chr9	51318270	51318470	-	1	NA	NA	NA	10547	NM_027217	69809	Mm.75315	NM_027217	ENSMUSG00000036027	1810046K07Rik	-	RIKEN cDNA 1810046K07 gene	protein-coding	0.020000	0.462687	
mm_61256.1	chr7	65879625	65879825	+	1	NA	NA	NA	17589	NM_011048	18553	Mm.294007	NM_011048	ENSMUSG00000030513	Pcsk6	C86343|Pace4|SPC4	proprotein convertase subtilisin/kexin type 6	protein-coding	0.025000	0.482587	
mm_67040.1	chr7	67234491	67234691	-	1	NA	NA	NA	11975	NM_001191051	75099	Mm.121691	NM_175215	ENSMUSG00000043831	Lysmd4	4930506D23Rik	LysM, putative peptidoglycan-binding, domain containing 4	protein-coding	0.010000	0.457711	
mm_16773.1	chr2	9881038	9881238	-	1	NA	NA	NA	-108	NR_024257	381347	Mm.441450	NR_024257		4930412O13Rik	ENSMUSG00000075535|Gm10853	RIKEN cDNA 4930412O13 gene	ncRNA	0.075000	0.626866	
mm_115787.1	chr13	19337030	19337230	-	1	NA	NA	NA	58683	NM_024270	76205	Mm.41940	NM_024270	ENSMUSG00000003062	Stard3nl	0610035N01Rik|6530409L22Rik|AW124774|MENTHO	STARD3 N-terminal like	protein-coding	0.005000	0.527363	
mm_38029.1	chr4	133872921	133873121	-	1	NA	NA	NA	1710	NM_001285506	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.035000	0.676617	
mm_20409.1	chr2	129299963	129300163	-	1	NA	NA	NA	2693	NR_040371	100503468	Mm.446943	NR_040371	ENSMUSG00000085498	Gm14023	OTTMUSG00000015408	predicted gene 14023	ncRNA	0.015000	0.353234	
mm_34907.1	chr4	155694389	155694589	+	1	NA	NA	NA	147	NM_178699	230991	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	0.190000	0.830846	
mm_147621.1	chr18	58009040	58009240	-	1	NA	NA	NA	130462	NM_009194	20496	Mm.399997	NM_009194	ENSMUSG00000024597	Slc12a2	9330166H04Rik|Nkcc1|mBSC2|sy-ns	solute carrier family 12, member 2	protein-coding	0.005000	0.283582	-6(TTTTTTAAACCC,+,0.00)
mm_52978.1	chr6	123262073	123262273	+	1	NA	NA	NA	66	NM_010819	17474	Mm.441101	NM_010819	ENSMUSG00000030144	Clec4d	Clecsf8|Mpcl|mcl	C-type lectin domain family 4, member d	protein-coding	0.000000	0.353234	
mm_157284.1	chrX	20860991	20861191	-	1	NA	NA	NA	2091	NR_049190	100885829		NR_049190	ENSMUSG00000093408	Mir5617	Gm25192|mir-5617|mmu-mir-5617	microRNA 5617	ncRNA	0.005000	0.422886	
mm_70045.1	chr7	142577905	142578105	-	1	NA	NA	NA	141	NR_130974	14955	Mm.14802	NR_001592	ENSMUSG00000000031	H19	AI747191	H19, imprinted maternally expressed transcript	ncRNA	0.030000	0.582090	
mm_43676.1	chr5	138799484	138799684	+	1	NA	NA	NA	-20496	NM_001195128	384244	Mm.485002	NM_001195128	ENSMUSG00000094504	Gm5294	EG384244	predicted gene 5294	protein-coding	0.005000	0.442786	
mm_40675.1	chr5	65536818	65537018	+	1	NA	NA	NA	-327	NM_016786	53323	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.070000	0.646766	
mm_119122.1	chr14	31130995	31131195	+	1	NA	NA	NA	-2165	NM_001308464	66487	Mm.379116	NM_001308091	ENSMUSG00000058351	Smim4	2010107H07Rik|Gm41122	small integral membrane protein 4	protein-coding	0.145000	0.786070	
mm_37840.1	chr4	132075219	132075419	-	1	NA	NA	NA	-6	NM_001128607	269587	Mm.30038	NM_183428	ENSMUSG00000028906	Epb41	4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb4.1|mKIAA4056	erythrocyte membrane protein band 4.1	protein-coding	0.075000	0.691542	48(ACCTCTTAAAGG,-,0.00),49(CCTCTTAAAGGG,+,0.00)
mm_85651.1	chr9	107657801	107658001	-	1	NA	NA	NA	9498	NM_023805	76257	Mm.296560	NM_023805	ENSMUSG00000010064	Slc38a3	0610012J02Rik|D9Ucla2|Nat1|Slc38-3|Sn1|Snat3|mNAT	solute carrier family 38, member 3	protein-coding	0.040000	0.626866	
mm_42240.1	chr5	113819487	113819687	+	1	NA	NA	NA	10914	NM_009151	20345	Mm.332590	NM_009151	ENSMUSG00000048163	Selplg	CD162|Psgl-1|Psgl1|Selp1|Selpl	selectin, platelet (p-selectin) ligand	protein-coding	0.025000	0.621891	
mm_121286.1	chr14	105258521	105258721	+	1	NA	NA	NA	-52	NM_029561	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.090000	0.601990	
mm_66916.1	chr7	60046842	60047042	-	1	NA	NA	NA	-41786	NM_033174	84704	Mm.274995	NM_033174	ENSMUSG00000000948	Snurf	2410045I01Rik|Snrpn	SNRPN upstream reading frame	protein-coding	0.005000	0.308458	
mm_126794.1	chr15	86334895	86335095	+	1	NA	NA	NA	120536	NM_145476	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.025000	0.532338	
mm_85362.1	chr9	103217402	103217602	-	1	NA	NA	NA	12784	NM_133977	22041	Mm.37214	NM_133977	ENSMUSG00000032554	Trf	AI266983|Cd176|HP|Tf|Tfn|hpx	transferrin	protein-coding	0.020000	0.502488	
mm_65408.1	chr7	25237753	25237953	-	1	NA	NA	NA	-2	NM_001031667	606496	Mm.491101	NM_001031667	ENSMUSG00000057177	Gsk3a	2700086H06Rik	glycogen synthase kinase 3 alpha	protein-coding	0.110000	0.681592	
mm_129147.1	chr15	76206200	76206400	-	1	NA	NA	NA	21	NM_201389	18810	Mm.234912	NM_011117	ENSMUSG00000022565	Plec	AA591047|AU042537|EBS1|PCN|PLTN|Plec1	plectin	protein-coding	0.045000	0.671642	
mm_30706.1	chr4	11966551	11966751	+	1	NA	NA	NA	77	NR_040577	100503636	Mm.209078	NR_040577		1700123M08Rik	1600025K15Rik	RIKEN cDNA 1700123M08 gene	ncRNA	0.100000	0.646766	
mm_84178.1	chr9	59949946	59950146	-	1	NA	NA	NA	33	NM_013708	23958	Mm.103641	NM_013708	ENSMUSG00000032292	Nr2e3	A930035N01Rik|PNR|RNR|rd7	nuclear receptor subfamily 2, group E, member 3	protein-coding	0.020000	0.512438	
mm_32617.1	chr4	114388337	114388537	+	1	NA	NA	NA	-18287	NM_001085549	666048	Mm.331779	NM_001085549	ENSMUSG00000070867	Trabd2b	Gm12824|Hkat|OTTMUSG00000008561	TraB domain containing 2B	protein-coding	0.005000	0.527363	
mm_69638.1	chr7	138846021	138846221	-	1	NA	NA	NA	146	NM_001045483	69546	Mm.31598	NM_027115	ENSMUSG00000041775	Mapk1ip1	2310009E07Rik|AU043776|MISS	mitogen-activated protein kinase 1 interacting protein 1	protein-coding	0.075000	0.597015	
mm_79127.1	chr9	47530253	47530453	+	1	NA	NA	NA	1	NM_018770	54725	Mm.234832	NM_018770	ENSMUSG00000032076	Cadm1	2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1	cell adhesion molecule 1	protein-coding	0.110000	0.701493	
mm_18217.1	chr2	49743618	49743818	-	1	NA	NA	NA	-43968	NM_027990	71897	Mm.41381	NM_027990	ENSMUSG00000026765	Lypd6b	2310010M24Rik|AW049525	LY6/PLAUR domain containing 6B	protein-coding	0.010000	0.487562	
mm_121918.1	chr14	22801147	22801347	-	1	NA	NA	NA	-258449	NR_046307	74896	Mm.444661	NR_046307		4930405A10Rik	4930456G20Rik	RIKEN cDNA 4930405A10 gene	ncRNA	0.035000	0.497512	
mm_145668.1	chr18	61274922	61275122	+	1	NA	NA	NA	54523	NM_146086	225600	Mm.391106	NM_146086	ENSMUSG00000024575	Pde6a	Pdea|nmf282	phosphodiesterase 6A, cGMP-specific, rod, alpha	protein-coding	0.015000	0.487562	
mm_136859.1	chr17	12807085	12807285	+	1	NA	NA	NA	-37479	NM_010515	16004	Mm.26553	NM_010515	ENSMUSG00000023830	Igf2r	AI661837|CD222|CI-MPR|M6P/IGF2R|Mpr300	insulin-like growth factor 2 receptor	protein-coding	0.025000	0.447761	
mm_63444.1	chr7	127485035	127485235	+	1	NA	NA	NA	-86	NM_010183	14123	Mm.323505	NM_010183	ENSMUSG00000042423	Fbrs	Fbs|Fbs1	fibrosin	protein-coding	0.030000	0.681592	
mm_150943.1	chr19	46306161	46306361	+	1	NA	NA	NA	331	NM_001177370	18034	Mm.102365	NM_019408	ENSMUSG00000025225	Nfkb2	NF-kappaB2|lyt|p49|p49/p100|p50B|p52	nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100	protein-coding	0.015000	0.562189	
mm_95715.1	chr11	54516683	54516883	+	1	NA	NA	NA	-6062	NM_001252494	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.000000	0.303483	
mm_140403.1	chr17	87640281	87640481	+	1	NA	NA	NA	4402	NM_008532	17075	Mm.4259	NM_008532	ENSMUSG00000045394	Epcam	CD326|EGP|EGP-2|Egp314|Ep-CAM|EpCAM1|GA733-2|Ly74|TROP1|Tacsd1|Tacstd1|gp40	epithelial cell adhesion molecule	protein-coding	0.075000	0.577114	-91(GCGTCTAAATGC,-,0.00)
mm_76732.1	chr8	95024410	95024610	-	1	NA	NA	NA	6818	NM_173036	54672	Mm.27995	NM_173036	ENSMUSG00000060470	Adgrg3	A030001G24Rik|AW214383|Gpr97|Pb1|Pb99	adhesion G protein-coupled receptor G3	protein-coding	0.005000	0.547264	
mm_152713.1	chr19	17394377	17394577	-	1	NA	NA	NA	434	NM_019437	54391	Mm.7013	NM_019437	ENSMUSG00000024712	Rfk	0610038L10Rik|AF031381|KOI-4	riboflavin kinase	protein-coding	0.085000	0.631841	
mm_30718.1	chr4	13517080	13517280	+	1	NA	NA	NA	-226122	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	runt-related transcription factor 1; translocated to, 1 (cyclin D-related)	protein-coding	0.000000	0.398010	-34(GTCTATAAATGA,-,0.00)
mm_167201.1	chr7	143106261	143106461	+	1	NA	NA	NA	-893	NM_008434	16535	Mm.439769	NM_008434	ENSMUSG00000009545	Kcnq1	AW559127|KVLQT1|Kcna9	potassium voltage-gated channel, subfamily Q, member 1	protein-coding	0.010000	0.472637	
mm_148891.1	chr19	6894192	6894392	+	1	NA	NA	NA	15353	NM_012021	54683	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.015000	0.522388	
mm_158839.1	chrX	168674255	168674455	-	1	NA	NA	NA	-453	NM_010832	17692	Mm.24248	NM_010832	ENSMUSG00000031358	Msl3	AU018931|Msl31|Msl3l1	male-specific lethal 3 homolog (Drosophila)	protein-coding	0.105000	0.691542	
mm_73104.1	chr8	94601998	94602198	+	1	NA	NA	NA	157	NM_026274	67610	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	0.080000	0.666667	
mm_63423.1	chr7	127471514	127471714	+	1	NA	NA	NA	0	NM_145589	233895	Mm.44183	NM_145589	ENSMUSG00000030822	Prr14	BC006909	proline rich 14	protein-coding	0.055000	0.582090	
mm_168640.1	chr11	84870883	84871083	+	1	NA	NA	NA	60	NR_131197	102635561	Mm.341797	NR_131197		Ggnbp2os	-	gametogenetin binding protein 2, opposite strand	ncRNA	0.090000	0.661692	
mm_140215.1	chr17	83810820	83811020	+	1	NA	NA	NA	35870	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.005000	0.407960	
mm_30805.1	chr4	20029272	20029472	+	1	NA	NA	NA	-12680	NM_010281	14590	Mm.20461	NM_010281	ENSMUSG00000073987	Ggh	gamma-GH	gamma-glutamyl hydrolase	protein-coding	0.000000	0.273632	
mm_152625.1	chr19	12473236	12473436	-	1	NA	NA	NA	12557	NM_010821	17476	Mm.3999	NM_010821	ENSMUSG00000046805	Mpeg1	MPS1|Mpg-1	macrophage expressed gene 1	protein-coding	0.020000	0.462687	
mm_83140.1	chr9	40455263	40455463	-	1	NA	NA	NA	401	NM_172768	235283	Mm.138434	NM_172768	ENSMUSG00000040111	Gramd1b	3222402H23|A930008A22Rik|AI593249|mKIAA1201	GRAM domain containing 1B	protein-coding	0.065000	0.611940	
mm_103250.1	chr11	70970626	70970826	-	1	NA	NA	NA	526	NM_001252415	69723	Mm.275691	NM_027186	ENSMUSG00000018449	Rpain	2400006N03Rik|Rip	RPA interacting protein	protein-coding	0.055000	0.567164	
mm_100249.1	chr11	117308707	117308907	+	1	NA	NA	NA	-22908	NM_017380	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.020000	0.562189	
mm_19090.1	chr2	79368763	79368963	-	1	NA	NA	NA	60125	NM_001048176	228094	Mm.440704	NM_001033295	ENSMUSG00000075256	Cerkl	Gm1958|Rp26	ceramide kinase-like	protein-coding	0.025000	0.472637	
mm_95418.1	chr11	50119500	50119700	+	1	NA	NA	NA	-11760	NM_001290759	76795	Mm.290975	NM_029745	ENSMUSG00000036644	Tbc1d9b	-	TBC1 domain family, member 9B	protein-coding	0.015000	0.507463	
mm_17925.1	chr2	35461182	35461382	-	1	NA	NA	NA	167	NM_001308299	14594	Mm.281124	NM_010283	ENSMUSG00000035778	Ggta1	AW108479|GALT|Gal|Ggta|Ggta-1|alpha Gal|alpha3GalT	glycoprotein galactosyltransferase alpha 1, 3	protein-coding	0.030000	0.552239	
mm_35187.1	chr4	16013671	16013871	-	1	NA	NA	NA	106	NM_145950	209212	Mm.46455	NM_145950	ENSMUSG00000041153	Osgin2	BC010311|C230027H09Rik	oxidative stress induced growth inhibitor family member 2	protein-coding	0.125000	0.761194	
mm_65691.1	chr7	28372473	28372673	-	1	NA	NA	NA	89	NM_138752	101497	Mm.235700	NM_138752	ENSMUSG00000037552	Plekhg2	AI194308|Clg|Cslg	pleckstrin homology domain containing, family G (with RhoGef domain) member 2	protein-coding	0.095000	0.706468	
mm_148308.1	chr18	83525198	83525398	-	1	NA	NA	NA	-199414	NR_045361	70960	Mm.410834	NR_045361		4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0.005000	0.537313	
mm_50139.1	chr6	41543125	41543325	+	1	NA	NA	NA	21449	NM_009430	22072	Mm.276926	NM_009430	ENSMUSG00000057163	Prss2	TRY8|TRYP|Ta|Tesp4|Try2	protease, serine 2	protein-coding	0.015000	0.522388	
mm_5765.1	chr1	48462193	48462393	-	1	NA	NA	NA	-995168	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA	0.010000	0.442786	
mm_113892.1	chr13	49190978	49191178	+	1	NA	NA	NA	3531	NM_013610	18081	Mm.18503	NM_013610	ENSMUSG00000037966	Ninj1	AU024536	ninjurin 1	protein-coding	0.015000	0.537313	-100(GGGTTTTAGAGG,-,0.00)
mm_31323.1	chr4	46371056	46371256	+	1	NA	NA	NA	18267	NM_029086	74753	Mm.45973	NM_029086	ENSMUSG00000028331	Trmo	5830415F09Rik|AV014846|Nap1	tRNA methyltransferase O	protein-coding	0.030000	0.641791	
mm_17817.1	chr2	33733321	33733521	-	1	NA	NA	NA	-72395	NR_045729	320482	Mm.442057	NR_045729	ENSMUSG00000086484	Nron	A630071L07Rik|Gm24353	non-protein coding RNA, repressor of NFAT	ncRNA	0.035000	0.661692	
mm_62816.1	chr7	113295227	113295427	+	1	NA	NA	NA	74012	NM_133700	68815	Mm.238034	NM_133700	ENSMUSG00000038187	Btbd10	1110056N09Rik|Gmrp1	BTB (POZ) domain containing 10	protein-coding	0.025000	0.577114	
mm_5838.1	chr1	52952595	52952795	-	1	NA	NA	NA	145	NM_144953	67080	Mm.236287	NM_144953	ENSMUSG00000043629	1700019D03Rik	2410136C24Rik|AA410151|smAKAP	RIKEN cDNA 1700019D03 gene	protein-coding	0.080000	0.706468	
mm_170489.1	chr19	17926806	17927006	-	1	NA	NA	NA	-89274	NM_001190483	18552	Mm.3401	NM_001163144	ENSMUSG00000024713	Pcsk5	PC5|PC6|SPC6|b2b1549Clo|b2b585Clo	proprotein convertase subtilisin/kexin type 5	protein-coding	0.020000	0.462687	
mm_15216.1	chr2	154272998	154273198	+	1	NA	NA	NA	15219	NM_175167	71425	Mm.389341	NM_175167	ENSMUSG00000067998	Bpifb9a	4833413D08Rik|AI413838	BPI fold containing family B, member 9A	protein-coding	0.025000	0.492537	
mm_3256.1	chr1	136172607	136172807	+	1	NA	NA	NA	40121	NM_001329610	76422	Mm.159735	NM_001329610		Mroh3	2310006M14Rik	maestro heat-like repeat family member 3	protein-coding	0.010000	0.601990	
mm_38039.1	chr4	133910569	133910769	-	1	NA	NA	NA	-22872	NM_009097	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.080000	0.641791	
mm_155970.1	chrX	106091114	106091314	+	1	NA	NA	NA	-52061	NM_205820	279572	Mm.336203	NM_205820	ENSMUSG00000033777	Tlr13	AI666735|Gm713	toll-like receptor 13	protein-coding	0.000000	0.328358	
mm_112168.1	chr12	113414489	113414689	-	1	NA	NA	NA	-74976	NM_001009545	238405	Mm.442216	NM_001009545	ENSMUSG00000051804	Adam6b	4930523C11Rik	a disintegrin and metallopeptidase domain 6B	protein-coding	0.005000	0.502488	
mm_67624.1	chr7	84109394	84109594	-	1	NA	NA	NA	-22989	NM_030728	80982	Mm.160389	NM_030728	ENSMUSG00000052353	Cemip	12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199	cell migration inducing protein, hyaluronan binding	protein-coding	0.025000	0.383085	
mm_136132.1	chr16	86805430	86805630	-	1	NA	NA	NA	-548655	NM_001159331	67768	Mm.296532	NM_026366	ENSMUSG00000044442	N6amt1	5830445C04Rik|Hemk2|Pred28	N-6 adenine-specific DNA methyltransferase 1 (putative)	protein-coding	0.010000	0.492537	
mm_100347.1	chr11	118428071	118428271	+	1	NA	NA	NA	-286	NM_001204129	56745	Mm.23845	NM_019959	ENSMUSG00000017446	C1qtnf1	1600017K21Rik|CTRP1|Zsig37	C1q and tumor necrosis factor related protein 1	protein-coding	0.025000	0.522388	
mm_62712.1	chr7	110768081	110768281	+	1	NA	NA	NA	-25	NM_001276301	11717	Mm.3238	NM_009667	ENSMUSG00000005686	Ampd3	-	adenosine monophosphate deaminase 3	protein-coding	0.025000	0.557214	
mm_17308.1	chr2	26360794	26360994	-	1	NA	NA	NA	-1347	NM_001037747	332579	Mm.330064	NM_001037747	ENSMUSG00000026928	Card9	Gm782	caspase recruitment domain family, member 9	protein-coding	0.010000	0.567164	
mm_122903.1	chr14	54953027	54953227	-	1	NA	NA	NA	-3985	NR_029724	387204		NR_029724	ENSMUSG00000065432	Mir208a	Mirn208|Mirn208a|mir-208|mir-208a|mmu-mir-208	microRNA 208a	ncRNA	0.005000	0.427861	
mm_168980.1	chr12	91891242	91891442	-	1	NA	NA	NA	-42185	NM_011344	20338	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0.075000	0.532338	
mm_142061.1	chr17	35670428	35670628	-	1	NA	NA	NA	-2936	NM_175137	68915	Mm.32002	NM_175137	ENSMUSG00000038838	Vars2	1190004I24Rik|Vars2l|mKIAA1885	valyl-tRNA synthetase 2, mitochondrial	protein-coding	0.020000	0.567164	
mm_27321.1	chr3	50366952	50367152	-	1	NA	NA	NA	76561	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.010000	0.432836	84(CCCTTAATAACC,+,0.00)
mm_86305.1	chr9	122351424	122351624	-	1	NA	NA	NA	-92	NM_026179	67469	Mm.280254	NM_026179	ENSMUSG00000032540	Abhd5	1300003D03Rik|2010002J10Rik|CDS|CGI-58|IECN5|NCIE2	abhydrolase domain containing 5	protein-coding	0.110000	0.671642	21(GACCATTAATGC,-,0.00)
mm_39565.1	chr5	23387165	23387365	+	1	NA	NA	NA	47088	NR_040469	269630	Mm.425231	NR_040469	ENSMUSG00000073147	5031425E22Rik	-	RIKEN cDNA 5031425E22 gene	ncRNA	0.025000	0.447761	
mm_78440.1	chr9	32115888	32116088	+	1	NA	NA	NA	-148	NM_001195632	330914	Mm.46683	NM_177379	ENSMUSG00000041444	Arhgap32	3426406O18Rik|Gc-gap|Grit|Px-rics|Rics|mKIAA0712|p200Rhogap|p250Gap	Rho GTPase activating protein 32	protein-coding	0.000000	0.527363	
mm_77268.1	chr8	116435626	116435826	-	1	NA	NA	NA	-69289	NM_029297	75465	Mm.23114	NM_029297	ENSMUSG00000034467	Dynlrb2	1700009A04Rik|DNLC2B|Dncl2b	dynein light chain roadblock-type 2	protein-coding	0.015000	0.552239	
mm_130504.1	chr15	98832005	98832205	-	1	NA	NA	NA	-597	NM_016781	19082	Mm.6670	NM_016781	ENSMUSG00000067713	Prkag1	AA571379|BB036179|Prkaac	protein kinase, AMP-activated, gamma 1 non-catalytic subunit	protein-coding	0.010000	0.363184	
mm_171401.1	chr4	123664477	123664677	-	1	NA	NA	NA	-1304	NR_136925	102633214	Mm.399387	NR_136925		Gm12925	OTTMUSG00000009214	predicted gene 12925	ncRNA	0.145000	0.766169	
mm_113589.1	chr13	40918052	40918252	+	1	NA	NA	NA	518	NM_133219	14538	Mm.314757	NM_008105	ENSMUSG00000021360	Gcnt2	5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	protein-coding	0.030000	0.502488	
mm_109615.1	chr12	112760600	112760800	+	1	NA	NA	NA	45	NM_178911	104759	Mm.203915	NM_178911	ENSMUSG00000052160	Pld4	AI132321|thss	phospholipase D family, member 4	protein-coding	0.015000	0.592040	
mm_123365.1	chr14	63164833	63165033	-	1	NA	NA	NA	14645	NM_010191	14137	Mm.474432	NM_010191	ENSMUSG00000021273	Fdft1	SQS|SS	farnesyl diphosphate farnesyl transferase 1	protein-coding	0.045000	0.671642	
mm_137480.1	chr17	26917035	26917235	+	1	NA	NA	NA	44	NM_053173	16580	Mm.491138	NM_016761	ENSMUSG00000024301	Kifc5b	Hset|KNSL2|Kifc5a	kinesin family member C5B	protein-coding	0.120000	0.646766	
mm_104374.1	chr11	94365341	94365541	-	1	NA	NA	NA	27535	NM_029600	76408	Mm.23942	NM_029600	ENSMUSG00000020865	Abcc3	1700019L09Rik|ABC31|MLP2|MOAT-D|MRP3	ATP-binding cassette, sub-family C (CFTR/MRP), member 3	protein-coding	0.010000	0.557214	
mm_66214.1	chr7	34385148	34385348	-	1	NA	NA	NA	4292	NM_025948	67070	Mm.276503	NM_025948	ENSMUSG00000066568	Lsm14a	2700023B17Rik|AA407828|AU017544|Tral	LSM14A mRNA processing body assembly factor	protein-coding	0.000000	0.253731	
mm_138804.1	chr17	39036595	39036795	+	1	NA	NA	NA	0	NM_001256050	100126776	Mm.471588	NM_001256050	ENSMUSG00000095625	Esp24	Gm21947	exocrine gland secreted peptide 24	protein-coding	0.010000	0.462687	
mm_39102.1	chr4	154921405	154921605	-	1	NA	NA	NA	6572	NM_178931	230979	Mm.215147	NM_178931	ENSMUSG00000042333	Tnfrsf14	Atar|HveA|Hvem|Tnfrs14	tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	protein-coding	0.000000	0.388060	
mm_129074.1	chr15	75748123	75748323	-	1	NA	NA	NA	-301	NM_194350	378435	Mm.309589	NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	0.125000	0.815920	
mm_69055.1	chr7	126884554	126884754	-	1	NA	NA	NA	313	NM_001163775	381921	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	0.070000	0.651741	
mm_28288.1	chr3	89089654	89089854	-	1	NA	NA	NA	277	NM_001083808	72296	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.050000	0.567164	
mm_140570.1	chr17	8734642	8734842	-	1	NA	NA	NA	-67003	NM_011866	23984	Mm.87161	NM_011866	ENSMUSG00000023868	Pde10a	-	phosphodiesterase 10A	protein-coding	0.040000	0.527363	-33(CAGCCTAAAAGG,-,0.00)
mm_12200.1	chr2	65845742	65845942	+	1	NA	NA	NA	75	NM_178634	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding	0.025000	0.457711	
mm_67367.1	chr7	79840810	79841010	-	1	NA	NA	NA	1442	NM_008486	16790	Mm.4487	NM_008486	ENSMUSG00000039062	Anpep	AP-M|AP-N|Apn|Cd13|P150	alanyl (membrane) aminopeptidase	protein-coding	0.020000	0.522388	
mm_20727.1	chr2	136781151	136781351	-	1	NA	NA	NA	67801	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.000000	0.477612	
mm_41324.1	chr5	90472459	90472659	+	1	NA	NA	NA	11689	NM_009654	11657	Mm.16773	NM_009654	ENSMUSG00000029368	Alb	Alb-1|Alb1|BCL002	albumin	protein-coding	0.010000	0.497512	
mm_23900.1	chr3	83031709	83031909	+	1	NA	NA	NA	5656	NM_001111048	14161	Mm.88793	NM_010196	ENSMUSG00000028001	Fga	ENSMUSG00000059807|Fib	fibrinogen alpha chain	protein-coding	0.010000	0.417910	
mm_25668.1	chr3	121890674	121890874	+	1	NA	NA	NA	-62552	NM_172525	214137	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.005000	0.487562	
mm_56312.1	chr6	92214760	92214960	-	1	NA	NA	NA	-49	NM_030081	78287	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	0.105000	0.656716	
mm_158140.1	chrX	103311690	103311890	-	1	NA	NA	NA	-9608	NM_007674	12592	Mm.4353	NM_007674	ENSMUSG00000031326	Cdx4	Cdx-3|Cdx-4|Cdx3	caudal type homeobox 4	protein-coding	0.010000	0.437811	
mm_168415.1	chr11	3203881	3204081	+	1	NA	NA	NA	962	NM_001166549	74203	Mm.255649	NM_023743	ENSMUSG00000020454	Eif4enif1	2610509L04Rik|A930019J01Rik|AA410001|AU021239|Clast4|D11Ertd166e	eukaryotic translation initiation factor 4E nuclear import factor 1	protein-coding	0.010000	0.427861	
mm_9255.1	chr1	171561954	171562154	-	1	NA	NA	NA	2861	NM_018729	18106	Mm.2299	NM_018729	ENSMUSG00000004709	Cd244	2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4	CD244 natural killer cell receptor 2B4	protein-coding	0.015000	0.492537	
mm_156901.1	chrX	168868925	168869125	+	1	NA	NA	NA	73926	NM_009707	11856	Mm.441810	NM_009707	ENSMUSG00000031355	Arhgap6	AI504284|RhoGAPX-1	Rho GTPase activating protein 6	protein-coding	0.005000	0.432836	
mm_56478.1	chr6	99095487	99095687	-	1	NA	NA	NA	-67289	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.040000	0.447761	
mm_11423.1	chr2	31759908	31760108	+	1	NA	NA	NA	69	NM_009594	11350	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.080000	0.706468	
mm_40958.1	chr5	76951289	76951489	+	1	NA	NA	NA	-22	NM_025939	67054	Mm.182931	NM_025939	ENSMUSG00000029247	Paics	2610511I09Rik|ADE2H1|AIRC|PAIS	phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase	protein-coding	0.080000	0.636816	
mm_91946.1	chr10	60834879	60835079	-	1	NA	NA	NA	-3398	NM_029770	107449	Mm.290433	NM_029770	ENSMUSG00000020099	Unc5b	6330415E02Rik|A630020F16|D10Bwg0792e|Unc5h2	unc-5 netrin receptor B	protein-coding	0.020000	0.447761	
mm_85614.1	chr9	107609131	107609331	-	1	NA	NA	NA	10	NM_001042779	20347	Mm.4083	NM_009153	ENSMUSG00000057969	Sema3b	SemA|Semaa|sema5|semaV	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B	protein-coding	0.015000	0.661692	
mm_73867.1	chr8	118561339	118561539	+	1	NA	NA	NA	277828	NM_019707	12554	Mm.334841	NM_019707	ENSMUSG00000031841	Cdh13	4932416G01Rik|Cdht|Tcad	cadherin 13	protein-coding	0.015000	0.333333	
mm_53760.1	chr6	145746653	145746853	+	1	NA	NA	NA	-61630	NM_027760	71323	Mm.158669	NM_027760	ENSMUSG00000030259	Rassf8	5133400D11Rik|AA815821|AW123240|Hoj1|mHoj-1	Ras association (RalGDS/AF-6) domain family (N-terminal) member 8	protein-coding	0.145000	0.815920	
mm_89057.1	chr10	82881747	82881947	+	1	NA	NA	NA	15221	NM_025499	66341	Mm.443284	NM_025499	ENSMUSG00000109864	Eid3	1700027M21Rik|NS4EB	EP300 interacting inhibitor of differentiation 3	protein-coding	0.040000	0.487562	72(AAGTTTATAAGG,-,0.00),74(GTTTATAAGGCA,+,0.00)
mm_62007.1	chr7	91262249	91262449	+	1	NA	NA	NA	171563	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs, large homolog 2 (Drosophila)	protein-coding	0.045000	0.572139	
mm_158325.1	chrX	133901114	133901314	-	1	NA	NA	NA	-2785	NM_019656	56496	Mm.46701	NM_019656	ENSMUSG00000067377	Tspan6	6720473L21Rik|AI316786|T245|TSPAN-6|Tm4sf|Tm4sf6	tetraspanin 6	protein-coding	0.015000	0.487562	-33(GGGTTTAAAAGG,-,0.00)
mm_108540.1	chr12	84296121	84296321	+	1	NA	NA	NA	10925	NM_001252626	77219	Mm.246127	NM_029880	ENSMUSG00000072946	Ptgr2	1810016I24Rik|9130222H03Rik|9630002F03Rik|AI838763|B830026H24Rik|PGR-2|PRG-2|Zadh1	prostaglandin reductase 2	protein-coding	0.005000	0.482587	64(CACTTTATATGC,-,0.00),66(CTTTATATGCAG,+,0.00)
mm_79088.1	chr9	46242537	46242737	+	1	NA	NA	NA	1793	NM_007468	11808	Mm.4533	NM_007468	ENSMUSG00000032080	Apoa4	Apoa-4	apolipoprotein A-IV	protein-coding	0.030000	0.532338	
mm_24491.1	chr3	92365052	92365252	+	1	NA	NA	NA	-35	NM_011472	20760	Mm.10692	NM_011472	ENSMUSG00000050635	Sprr2f	-	small proline-rich protein 2F	protein-coding	0.015000	0.462687	
mm_48284.1	chr5	138171728	138171928	-	1	NA	NA	NA	34	NM_008568	17220	Mm.378965	NM_008568	ENSMUSG00000029730	Mcm7	AI747533|Mcmd7|mCDC47	minichromosome maintenance complex component 7	protein-coding	0.110000	0.597015	
mm_57353.1	chr6	124756869	124757069	-	1	NA	NA	NA	-482	NM_007881	13498	Mm.333380	NM_007881	ENSMUSG00000004263	Atn1	Atr1|Drpla|atrophin-1	atrophin 1	protein-coding	0.105000	0.746269	
mm_164573.1	chr17	23857217	23857417	+	1	NA	NA	NA	3545	NM_027220	69814	Mm.244143	NM_027220	ENSMUSG00000048992	Prss32	2010001P08Rik|mT5|tryptase-5	protease, serine 32	protein-coding	0.015000	0.547264	
mm_47014.1	chr5	115488827	115489027	-	1	NA	NA	NA	-4443	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.040000	0.502488	
mm_149427.1	chr19	11469267	11469467	+	1	NA	NA	NA	-1	NM_001166376	73656	Mm.440719	NM_028595	ENSMUSG00000079419	Ms4a6c	2200009H22Rik|2210417N07Rik	membrane-spanning 4-domains, subfamily A, member 6C	protein-coding	0.015000	0.497512	
mm_37561.1	chr4	126198633	126198833	-	1	NA	NA	NA	3977	NM_146153	230753	Mm.29813	NM_146153	ENSMUSG00000043962	Thrap3	9330151F09Rik|B230333E16Rik|Trap150	thyroid hormone receptor associated protein 3	protein-coding	0.015000	0.477612	
mm_71445.1	chr8	46519127	46519327	+	1	NA	NA	NA	28261	NM_001302163	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.005000	0.482587	
mm_113938.1	chr13	49682044	49682244	+	1	NA	NA	NA	14	NM_172015	105148	Mm.21118	NM_172015	ENSMUSG00000037851	Iars	2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS	isoleucine-tRNA synthetase	protein-coding	0.075000	0.621891	
mm_92332.1	chr10	75797432	75797632	-	1	NA	NA	NA	1052	NM_008185	14871	Mm.2746	NM_008185	ENSMUSG00000001663	Gstt1	AI255817|Gstt1-1	glutathione S-transferase, theta 1	protein-coding	0.030000	0.601990	
mm_170977.1	chr2	6871769	6871969	-	1	NA	NA	NA	166	NM_001347094	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.045000	0.427861	-39(GCTTTAAAACTA,+,0.00)